PeakID (cmd=annotatePeaks.pl S04_S4_SEACR.relaxed.bed hg38 -annStats S04_S4_SEACR.relaxed.log) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type 6191 chr17_KI270729v1_random 27562 27912 + 42 NA NA (GAATG)n|Satellite|Satellite NA NA 12180 chr5 49599382 49600866 + 32 NA Intergenic BSR/Beta|Satellite|Satellite 841164 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 4590 chrUn_KI270336v1 285 693 + 29 NA NA SAR|Satellite|Satellite NA NA 9052 chr4 49709389 49710960 + 26 NA Intergenic SAR|Satellite|Satellite 723532 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 4121 chr17 25920029 25920365 + 24 NA Intergenic ALR/Alpha|Satellite|centr 1169044 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 3375 chr4 49657476 49657833 + 21 NA Intergenic (GAATG)n|Satellite|Satellite 671012 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 8573 chrUn_GL000216v2 22 861 + 21 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 6461 chrUn_KI270333v1 1022 2661 + 19 NA NA SAR|Satellite|Satellite NA NA 3102 chr14_GL000225v1_random 92691 92930 + 19 NA NA BSR/Beta|Satellite|Satellite NA NA 2812-2 chrY 11305251 11305455 + 18 NA Intergenic BSR/Beta|Satellite|Satellite 1116237 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 6847 chrUn_KI270438v1 103631 105107 + 17 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 3576 chr16 34593178 34593702 + 16 NA Intergenic (GATTCCATTC)n|Simple_repeat|Simple_repeat -211960 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 3957 chr14_GL000225v1_random 67260 68370 + 14 NA NA BSR/Beta|Satellite|Satellite NA NA 5672 chr20 31059478 31061433 + 14 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -197209 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 5177 chr5 49666387 49667237 + 14 NA Intergenic (CATTC)n|Satellite|Satellite 774476 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 3527 chrUn_KI270544v1 42 852 + 13 NA NA ALR/Alpha|Satellite|centr NA NA 1615 chr10 41859803 41859989 + 13 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 508149 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 3975 chr7 6673615 6674610 + 13 NA Intergenic Intergenic 32835 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 3738 chr4 49711166 49711942 + 13 NA Intergenic SAR|Satellite|Satellite 724912 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 2723 chrUn_KI270438v1 108520 109008 + 13 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 2325 chr14_GL000225v1_random 130250 130678 + 12 NA NA BSR/Beta|Satellite|Satellite NA NA 3176 chr1 42518882 42519470 + 11 NA intron (NM_001355227, intron 6 of 18) L1MB3|LINE|L1 -13844 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 1602-4 chr2 114639607 114639829 + 11 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 178141 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 3454 chrUn_KI270438v1 105512 106086 + 11 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 6290 chr4 30413355 30415123 + 11 NA Intergenic L1MB5|LINE|L1 -306130 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1840 chr17 26882251 26882644 + 11 NA Intergenic ALR/Alpha|Satellite|centr 206794 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 2632 chr7 33300474 33301536 + 10 NA intron (NM_198428, intron 9 of 22) L1MEg|LINE|L1 171441 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 4309 chr4 49149133 49149885 + 10 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 162867 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 4872 chr10 43481989 43483070 + 10 NA 3' UTR (NM_001355445, exon 4 of 4) 3' UTR (NM_001355445, exon 4 of 4) 45418 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 2003-2 chr3 72228848 72229338 + 10 NA Intergenic MLT1A1|LTR|ERVL-MaLR 77836 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 6521 chr5 49659360 49660592 + 10 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 781312 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1520-5 chr8 132591791 132592095 + 10 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -30464 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 2120 chr14_GL000225v1_random 116579 117201 + 10 NA NA BSR/Beta|Satellite|Satellite NA NA 2111 chr19 52472965 52473546 + 10 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 19702 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 1720 chr1 66416261 66416568 + 10 NA Intergenic L1MA7|LINE|L1 61879 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 2059 chr4 64378639 64378900 + 10 NA intron (NM_001363796, intron 1 of 11) intron (NM_001363796, intron 1 of 11) 30681 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 4058 chr4 30415168 30415936 + 10 NA Intergenic L1MB5|LINE|L1 -304817 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 2557 chr16 46394229 46394953 + 10 NA Intergenic Intergenic 174506 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 2812 chr5 150896659 150897790 + 9 NA intron (NM_052860, intron 5 of 5) intron (NM_052860, intron 5 of 5) 7759 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1721 chr10 85804249 85804619 + 9 NA intron (NM_017551, intron 8 of 15) L1ME2|LINE|L1 226703 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 2209 chr20 31184836 31185455 + 9 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -72519 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 4908 chr17 74141440 74143212 + 9 NA Intergenic L1ME2|LINE|L1 -61352 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 1884 chr12 112756601 112756990 + 9 NA intron (NM_001347952, intron 1 of 21) L1ME4b|LINE|L1 -34743 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 2451 chr14 72759534 72760180 + 9 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 132792 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 2051 chr8 139687706 139688325 + 9 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 15108 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1411 chr11 39950854 39951173 + 9 NA Intergenic Intergenic 342117 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1385-3 chr12 118829456 118829662 + 9 NA intron (NR_134997, intron 2 of 2) intron (NR_134997, intron 2 of 2) 3977 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 2015-2 chr8 102016429 102017198 + 9 NA intron (NM_001040624, intron 3 of 7) L1ME1|LINE|L1 32381 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 1644 chr5 26855834 26856291 + 9 NA Intergenic MSTB-int|LTR|ERVL-MaLR 182524 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 2794 chr12 37891236 37892031 + 9 NA Intergenic ALR/Alpha|Satellite|centr -425141 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 2025 chr19 36753644 36754082 + 9 NA intron (NM_001267779, intron 3 of 3) MIR|SINE|MIR 18944 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 2545 chr2 95150310 95151142 + 9 NA intron (NM_001318005, intron 4 of 4) intron (NM_001318005, intron 4 of 4) 8859 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 2481 chr9 82693752 82694349 + 9 NA Intergenic L1MA4A|LINE|L1 369092 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 1235-9 chr9 35149641 35149884 + 9 NA Intergenic LTR25-int|LTR|ERV1 -12247 NM_001371189 2082-2 chr17 30360687 30361336 + 9 NA Intergenic MIRb|SINE|MIR -17916 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 2492 chr2 22418567 22419283 + 9 NA Intergenic L1MEd|LINE|L1 -117554 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 1299-7 chr9 29819406 29819621 + 9 NA Intergenic L1M2c|LINE|L1 588941 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 1888 chr10 43523949 43524361 + 9 NA Intergenic Intergenic 44304 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 2585 chr17 74143394 74143866 + 9 NA Intergenic THE1C|LTR|ERVL-MaLR -60048 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 2186 chr4 30407977 30408474 + 9 NA Intergenic L1M2|LINE|L1 -312144 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 732-100 chrUn_KI270442v1 92338 92455 + 9 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 1945-2 chrUn_KI270411v1 1037 1579 + 9 NA NA ALR/Alpha|Satellite|centr NA NA 1567 chr15 52242894 52243234 + 9 NA intron (NM_018728, intron 19 of 40) L2a|LINE|L2 34136 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 1526-2 chr12 2070633 2070997 + 9 NA intron (NM_199460, intron 1 of 49).2 L1MEd|LINE|L1 17530 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 1867 chr9 92846629 92847097 + 9 NA exon (NM_031486, exon 5 of 5) exon (NM_031486, exon 5 of 5) 31105 NM_001354536 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 1930-2 chr4 129058577 129059091 + 9 NA intron (NM_001300898, intron 2 of 5) L1M2a|LINE|L1 34705 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 1666 chr11 13581206 13581511 + 9 NA Intergenic L1M1|LINE|L1 -85183 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 2104 chr5 150924570 150925268 + 9 NA Intergenic L1M3b|LINE|L1 -19936 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1649-2 chr4 30638881 30639174 + 9 NA Intergenic Intergenic -81342 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1936 chr11 50514700 50515219 + 9 NA Intergenic ALR/Alpha|Satellite|centr 105812 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1912-2 chr8 129347203 129347831 + 9 NA Intergenic L1MEf|LINE|L1 -106277 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 3085 chr9 96822755 96823918 + 9 NA intron (NM_001001662, intron 5 of 5) intron (NM_001001662, intron 5 of 5) 31178 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 4752 chrUn_KI270466v1 130 1181 + 9 NA NA SAR|Satellite|Satellite NA NA 3962 chrUn_KI270337v1 9 1095 + 9 NA NA SAR|Satellite|Satellite NA NA 1587-3 chr4 49150300 49150741 + 9 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 163878 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1528 chr11 50460331 50460886 + 8 NA Intergenic ALR/Alpha|Satellite|centr 51461 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1152-9 chr5 179094264 179094484 + 8 NA Intergenic L1MA4|LINE|L1 34001 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 1420 chr12 21942752 21943076 + 8 NA Intergenic MIR|SINE|MIR -6220 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 1370-6 chr4 58182606 58182846 + 8 NA Intergenic Intergenic 353602 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 1729 chr14_GL000225v1_random 117394 117925 + 8 NA NA BSR/Beta|Satellite|Satellite NA NA 1651 chr22 45570485 45570932 + 8 NA intron (NM_006486, intron 14 of 16) L1MC5|LINE|L1 34939 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 2850 chr4 49120391 49121666 + 8 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 134386 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 3040 chr18 14103524 14104752 + 8 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 28297 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 1102-18 chr8 15935927 15936178 + 8 NA Intergenic L2c|LINE|L2 250220 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 1160-4 chr2 89841001 89841289 + 8 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203238 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 2247 chr6 39175971 39176801 + 8 NA Intergenic Intergenic 53089 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 3959 chr19 27603743 27605223 + 8 NA Intergenic ALR/Alpha|Satellite|centr -188948 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 2274 chr8 121837861 121838960 + 8 NA Intergenic Intergenic -196970 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 2619 chr7 5068553 5069254 + 8 NA 3' UTR (NM_021163, exon 5 of 5) 3' UTR (NM_021163, exon 5 of 5) -3157 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1945 chr12 1904698 1905357 + 8 NA intron (NM_172364, intron 6 of 37).2 L1M4c|LINE|L1 13625 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 1369-4 chrUn_KI270438v1 110364 110653 + 8 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 2682 chr2 63345345 63345800 + 8 NA intron (NR_148704, intron 13 of 18) ERV3-16A3_I-int|LTR|ERVL 92435 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 1299-5 chr5 16408704 16408976 + 8 NA intron (NR_104625, intron 7 of 8) intron (NR_104625, intron 7 of 8) 32262 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 1369-3 chr5 144019446 144019870 + 8 NA Intergenic Intergenic 151001 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 1674-2 chr12 133062506 133062965 + 8 NA 3' UTR (NM_003428, exon 5 of 5) 3' UTR (NM_003428, exon 5 of 5) -17468 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 702-76 chr5 33170147 33170361 + 8 NA Intergenic L1ME2z|LINE|L1 -59481 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 1970 chr10 75572832 75573460 + 8 NA intron (NM_001305581, intron 2 of 6) L1MEd|LINE|L1 20688 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 1645-2 chr14 62332950 62333385 + 8 NA Intergenic L1MEc|LINE|L1 -193194 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 2045 chr2 86270809 86271608 + 8 NA intron (NM_001164731, intron 1 of 5) AluSz6|SINE|Alu 66418 NM_022912 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 2298 chr14 56972891 56973616 + 8 NA Intergenic Intergenic 160095 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 1382-4 chr2 197350866 197351056 + 8 NA Intergenic AluSz|SINE|Alu -40181 NM_001367497 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 1342 chr10 106318864 106319126 + 8 NA Intergenic L1M5|LINE|L1 178830 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 1771-2 chr4 49105685 49106038 + 8 NA Intergenic (CATTC)n|Satellite|Satellite 119219 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 8989 chr7 6687416 6690701 + 8 NA 3' UTR (NM_016265, exon 5 of 5) 3' UTR (NM_016265, exon 5 of 5) 17889 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 2871 chr22 19648738 19649655 + 8 NA Intergenic L1M4|LINE|L1 -65307 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 1352-6 chr9 96275123 96275468 + 8 NA intron (NM_000197, intron 2 of 10) L1MA9|LINE|L1 26881 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 1647-3 chr2 78050078 78050592 + 8 NA intron (NR_110288, intron 1 of 3) L1PA14|LINE|L1 -38395 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 1701 chr7 6674956 6675373 + 8 NA Intergenic Intergenic 31783 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 1265-2 chr3 152485634 152485974 + 8 NA Intergenic Intergenic -144814 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 2792 chr21 29254306 29255202 + 8 NA intron (NR_027072, intron 1 of 1) L1ME1|LINE|L1 -44168 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 2196 chr15 71171226 71172014 + 8 NA intron (NR_120349, intron 1 of 1) L1MEc|LINE|L1 17439 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 1275-7 chr8 80947099 80947279 + 8 NA Intergenic Intergenic -72408 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 1149-7 chr20 42767707 42767946 + 8 NA intron (NM_133170, intron 5 of 31) (TA)n|Simple_repeat|Simple_repeat 82343 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 1730 chr1 115568614 115569113 + 8 NA Intergenic L1MA4A|LINE|L1 -73107 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 1672 chr18 4891956 4892382 + 8 NA Intergenic MER65C|LTR|ERV1 -189013 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1799-3 chr5 133721238 133721856 + 8 NA Intergenic L1M2a|LINE|L1 -109006 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 1108-20 chr9 98365740 98365946 + 8 NA intron (NM_005458, intron 12 of 18) intron (NM_005458, intron 12 of 18) -110194 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 2555 chr11 55032084 55032879 + 8 NA Intergenic ALR/Alpha|Satellite|centr -229674 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 3383 chr10 38527790 38528901 + 8 NA Intergenic Intergenic 100199 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 1428-3 chr5 77528483 77528798 + 8 NA Intergenic L1MB5|LINE|L1 -36324 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 1454-3 chr2 128036312 128036567 + 8 NA Intergenic MER4D|LTR|ERV1 -8380 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 1753-2 chr2 102217397 102217938 + 8 NA intron (NM_001351447, intron 4 of 9) L1M2|LINE|L1 30353 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 1762-2 chr3 54401460 54401861 + 8 NA intron (NM_018398, intron 4 of 37) L1MA6|LINE|L1 238197 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 1306-2 chr2 30723979 30724452 + 8 NA intron (NM_144575, intron 22 of 22) HAL1|LINE|L1 83231 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 1926 chr15 70622893 70623481 + 8 NA Intergenic L1MEg|LINE|L1 7640 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 3322 chr3 10733148 10734219 + 8 NA Intergenic L1MB7|LINE|L1 30526 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 2010 chr19 37561459 37562094 + 8 NA intron (NM_152606, intron 1 of 4) intron (NM_152606, intron 1 of 4) 10402 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 1242 chr11 34268360 34268536 + 8 NA intron (NM_145804, intron 1 of 16) MIR1_Amn|SINE|MIR 89562 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 1590-2 chr11 55054213 55054559 + 8 NA Intergenic ALR/Alpha|Satellite|centr -207769 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 1941-2 chrUn_GL000216v2 149362 149869 + 8 NA NA BSR/Beta|Satellite|Satellite NA NA 2050 chr18 35304091 35304696 + 8 NA intron (NR_024565, intron 2 of 2) HERVL40-int|LTR|ERVL 14121 NR_024565 10778 Hs.314246 NM_006629 ENSG00000257267 ZNF271P CT-ZFP48|HZF7|ZNF-EB|ZNF-dp|ZNF271|ZNFEB zinc finger protein 271, pseudogene pseudo 1673 chr19 58198107 58198644 + 8 NA intron (NM_133502, intron 4 of 7) intron (NM_133502, intron 4 of 7) 15314 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 1464-2 chr1 179719481 179719808 + 8 NA Intergenic L1MB7|LINE|L1 -8132 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 1501 chr10 43643257 43643655 + 8 NA promoter-TSS (NR_047557) promoter-TSS (NR_047557) -416 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 2215 chr16 34081340 34082179 + 8 NA Intergenic Intergenic -81819 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 2911 chr8 128997006 128998256 + 8 NA Intergenic Intergenic -31630 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 3219 chr2 115372750 115373842 + 8 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 29481 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1297-8 chr6 53839312 53839569 + 8 NA intron (NM_018214, intron 1 of 13) HAL1|LINE|L1 44435 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 1352-2 chr12 18004158 18004460 + 8 NA Intergenic L1MC1|LINE|L1 85884 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 1453-6 chr8 139930381 139930758 + 8 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 169966 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 998-17 chr7 97714421 97714669 + 8 NA Intergenic L1PB1|LINE|L1 -17541 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 2161 chr2 35113675 35114261 + 8 NA Intergenic L1M2|LINE|L1 -357437 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 4117 chr7 5066882 5068119 + 8 NA 3' UTR (NM_021163, exon 5 of 5) 3' UTR (NM_021163, exon 5 of 5) -4560 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1329 chr14_GL000225v1_random 56163 56363 + 8 NA NA BSR/Beta|Satellite|Satellite NA NA 2144-2 chr19 27663083 27664015 + 8 NA Intergenic ALR/Alpha|Satellite|centr -129882 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1861-2 chr2 164319780 164320241 + 8 NA Intergenic L1MC3|LINE|L1 248485 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 4234 chr20 62108499 62109894 + 8 NA Intergenic L1M4|LINE|L1 -13279 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 2135 chr5 173591934 173592505 + 8 NA Intergenic MamGypLTR3a|LTR|Gypsy 12585 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 1447-3 chr12 31609014 31609299 + 8 NA intron (NR_046909, intron 2 of 2) intron (NR_046909, intron 2 of 2) -18020 NM_144973 160518 Hs.118166 NM_144973 ENSG00000170456 DENND5B - DENN domain containing 5B protein-coding 3305 chr19 27567706 27568713 + 8 NA Intergenic ALR/Alpha|Satellite|centr -225222 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1404-2 chr1 214758098 214758472 + 8 NA Intergenic ERVL-E-int|LTR|ERVL 155090 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 3351 chr10 34063585 34064758 + 8 NA Intergenic Intergenic -291491 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 5967 chr10 5388725 5391202 + 8 NA Intergenic Intergenic 14865 NM_024803 79861 Hs.163079 NM_024803 ENSG00000178462 TUBAL3 - tubulin alpha like 3 protein-coding 1852-5 chr5 178931422 178932037 + 8 NA exon (NM_030613, exon 5 of 5) exon (NM_030613, exon 5 of 5) -9469 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 1195-13 chr5 152000213 152000483 + 8 NA intron (NR_109876, intron 1 of 2) MER20|DNA|hAT-Charlie 41450 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 2121 chr2 121053284 121053820 + 8 NA Intergenic Intergenic 231650 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 2272 chr10 43644223 43644776 + 8 NA exon (NM_001005368, exon 3 of 3) exon (NM_001005368, exon 3 of 3) 627 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 1703-2 chr10 73316091 73316725 + 8 NA intron (NM_001367801, intron 10 of 27) L1ME1|LINE|L1 42346 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 982-20 chr4 51107150 51107401 + 8 NA Intergenic SAR|Satellite|Satellite -735725 NM_001287757 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 574-23 chr11 58338378 58338466 + 7 NA Intergenic L1MD3|LINE|L1 20647 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 2085 chr10 64224346 64225181 + 7 NA Intergenic L1MA5|LINE|L1 -600765 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 1629-2 chr17 61192074 61192708 + 7 NA intron (NM_001330413, intron 23 of 25) L1MEi|LINE|L1 175313 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 1756 chr10 43641935 43642360 + 7 NA intron (NR_038867, intron 1 of 4) L1ME2|LINE|L1 -1725 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 1173-4 chr14 66945623 66945989 + 7 NA intron (NM_020806, intron 8 of 22) MER92-int|LTR|ERV1 -243634 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 1089-2 chr12 17631881 17632297 + 7 NA Intergenic Intergenic -41210 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 2782 chr7 6692999 6693869 + 7 NA intron (NM_006956, intron 4 of 5) intron (NM_006956, intron 4 of 5) 13513 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 1381-3 chr5 126399758 126400074 + 7 NA intron (NM_001146319, intron 1 of 13) L1M3c|LINE|L1 -23230 NM_001146320 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 1273-2 chr12 39149829 39150228 + 7 NA Intergenic L1MA2|LINE|L1 -244437 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 1814-2 chr2 48931032 48931450 + 7 NA Intergenic LTR37A|LTR|ERV1 -128362 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 1321-3 chr14 19891126 19891599 + 7 NA Intergenic L1PB4|LINE|L1 15094 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 1758 chr8 122655646 122656166 + 7 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 38200 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 1603-3 chr3 183652809 183653224 + 7 NA intron (NM_001349426, intron 2 of 6) intron (NM_001349426, intron 2 of 6) 17393 NM_001349423 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 1246-5 chr2 129579796 129580100 + 7 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 297543 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 1058-3 chr10 49061471 49061735 + 7 NA intron (NM_001031746, intron 5 of 7) L1ME1|LINE|L1 53919 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 2369 chr14 81968009 81968923 + 7 NA Intergenic Intergenic -225328 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 1586 chr14 61976357 61976823 + 7 NA intron (NM_001367657, intron 3 of 6) THE1D-int|LTR|ERVL-MaLR 48895 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 2099-2 chr7 3423119 3423886 + 7 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 122250 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1490-5 chr5 15037335 15037835 + 7 NA Intergenic UCON18|Unknown|Unknown -165807 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 1347 chr12 130097305 130097745 + 7 NA Intergenic Intergenic 26190 NR_146538 105370078 NR_146538 LINC02419 - long intergenic non-protein coding RNA 2419 ncRNA 2199 chr4 63346731 63347420 + 7 NA Intergenic ALR/Alpha|Satellite|centr 1062375 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1743-5 chr5 150893550 150893934 + 7 NA TTS (NM_001172832) TTS (NM_001172832) 11241 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1925 chr10 42518023 42518787 + 7 NA non-coding (NR_026777, exon 8 of 8) non-coding (NR_026777, exon 8 of 8) 34465 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 1245-3 chr4 82765994 82766210 + 7 NA intron (NM_001037582, intron 1 of 4) L1MEc|LINE|L1 -12672 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 1238-5 chr2 53527331 53527795 + 7 NA Intergenic HAL1|LINE|L1 -240220 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 811-21 chr18 78898139 78898351 + 7 NA Intergenic Intergenic -82030 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 1902 chr18 1943355 1943874 + 7 NA Intergenic L1MA9|LINE|L1 -583985 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 3040-2 chr8 144982957 144984031 + 7 NA intron (NR_023392, intron 4 of 4) MSTA|LTR|ERVL-MaLR -11371 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 1632-2 chr1 213562989 213563459 + 7 NA Intergenic L1MEd|LINE|L1 -361525 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 3367 chr5 140764490 140765520 + 7 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -21131 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 1825 chr8 102142194 102142887 + 7 NA Intergenic L1MEc|LINE|L1 17108 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 4378 chr20 47066453 47068011 + 7 NA intron (NM_172110, intron 5 of 13) intron (NM_172110, intron 5 of 13) -99735 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 1042-14 chr8 139912326 139912713 + 7 NA intron (NM_001160372, intron 19 of 22) L1ME4a|LINE|L1 188016 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 765-60 chr6 156575437 156575734 + 7 NA Intergenic L1MEg|LINE|L1 196835 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 1824 chr18 1903725 1904284 + 7 NA Intergenic L1M5|LINE|L1 -544375 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1616-4 chr8 54946861 54947483 + 7 NA Intergenic Charlie7|DNA|hAT-Charlie -154856 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 783-50 chr22 27713877 27714092 + 7 NA Intergenic Intergenic 87772 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 2081-2 chr5 89200632 89201411 + 7 NA intron (NR_136219, intron 6 of 9) MIR|SINE|MIR -296916 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 1173-13 chr6 152708360 152708696 + 7 NA intron (NM_025107, intron 1 of 1) intron (NM_025107, intron 1 of 1) 10633 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 984-16 chr7 3506729 3506902 + 7 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 205563 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1204-3 chr2 39563432 39563808 + 7 NA intron (NR_037875, intron 5 of 5) L1MA4A|LINE|L1 -101878 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 1347-4 chr8 46474783 46475171 + 7 NA Intergenic ALR/Alpha|Satellite|centr 142666 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 1126-3 chr16 31756174 31756487 + 7 NA intron (NM_001130913, intron 4 of 4) intron (NM_001130913, intron 4 of 4) 43101 NM_001130913 124411 Hs.528826 NM_001004300 ENSG00000197302 ZNF720 - zinc finger protein 720 protein-coding 1268-7 chr19 56582408 56582691 + 7 NA 3' UTR (NM_001001668, exon 6 of 6) 3' UTR (NM_001001668, exon 6 of 6) -12747 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 1821-2 chr21 14418815 14419299 + 7 NA Intergenic L1M4c|LINE|L1 -35911 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 1947-2 chr2 226105430 226105913 + 7 NA Intergenic Intergenic -37123 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 733-63 chr5 45831426 45831650 + 7 NA Intergenic Intergenic -135158 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 6661 chr8 126275316 126277542 + 7 NA Intergenic L1MEg|LINE|L1 -49066 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 1991 chr1 247156173 247156733 + 7 NA 3' UTR (NM_001297568, exon 4 of 4) 3' UTR (NM_001297568, exon 4 of 4) 15564 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 1134-11 chr2 118384809 118385101 + 7 NA Intergenic L1ME4a|LINE|L1 -198569 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 962-11 chr20 39317590 39317876 + 7 NA Intergenic Tigger8|DNA|TcMar-Tigger -92985 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 690-77 chr4 38390160 38390357 + 7 NA Intergenic Intergenic 23344 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 2022-2 chr5 33136085 33136871 + 7 NA Intergenic L1M3b|LINE|L1 -93257 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 1559-3 chr21 10696654 10697154 + 7 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 175390 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 2890 chr8 124977746 124978727 + 7 NA 3' UTR (NM_152412, exon 3 of 3) 3' UTR (NM_152412, exon 3 of 3) 4941 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 4352 chr20 43808915 43810313 + 7 NA Intergenic L1MB7|LINE|L1 -82612 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 1728 chr1 113489926 113490501 + 7 NA intron (NM_001142782, intron 1 of 20) L1PA13|LINE|L1 99698 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 1419-6 chr8 125782889 125783424 + 7 NA Intergenic L1ME1|LINE|L1 168041 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1452-3 chr10 43523104 43523622 + 7 NA Intergenic Intergenic 45096 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 1715-5 chr6 158905116 158905776 + 7 NA intron (NR_160979, intron 2 of 2) L1ME3C|LINE|L1 16969 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 1539-3 chr8 82577452 82577698 + 7 NA Intergenic L1MD3|LINE|L1 -334529 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 1605 chr17 16621736 16622278 + 7 NA 3' UTR (NM_020787, exon 6 of 6) 3' UTR (NM_020787, exon 6 of 6) 31843 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 1075-16 chr8 144843631 144843963 + 7 NA TTS (NM_001349806) TTS (NM_001349806) 9251 NM_001081004 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 2214 chr17 16620764 16621430 + 7 NA 3' UTR (NM_020787, exon 6 of 6) 3' UTR (NM_020787, exon 6 of 6) 32753 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 1932-2 chr17 69216335 69216789 + 7 NA intron (NM_080282, intron 7 of 39) MIR|SINE|MIR 18450 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 1102-3 chr11 79649354 79649615 + 7 NA Intergenic MIRc|SINE|MIR -208454 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 1209-7 chr4 38661177 38661524 + 7 NA intron (NR_026804, intron 1 of 7) L2c|LINE|L2 -2849 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 1597-2 chr2 31699738 31700167 + 7 NA Intergenic L1M3b|LINE|L1 104028 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 3275 chr8 138400188 138401426 + 7 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 96454 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1491-2 chr6 65510335 65510777 + 7 NA intron (NM_001292009, intron 2 of 43) HAL1|LINE|L1 69248 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 1453-4 chr5 43892284 43892754 + 7 NA Intergenic MER6A|DNA|TcMar-Tigger -289289 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 1777-2 chr2 121674402 121674887 + 7 NA intron (NR_037857, intron 2 of 3) L1PBa|LINE|L1 24655 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 1396-5 chr12 4248818 4249239 + 7 NA non-coding (NR_149145, exon 4 of 4) non-coding (NR_149145, exon 4 of 4) -24734 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 1759 chr1 210280377 210280952 + 7 NA Intergenic MER61E|LTR|ERV1 -46779 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 2689-2 chr2 125073643 125074502 + 7 NA Intergenic Intergenic 1043913 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 1192-4 chr2 31691196 31691478 + 7 NA Intergenic HUERS-P3-int|LTR|ERV1 -110399 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 1851 chr15 70231905 70232580 + 7 NA Intergenic HAL1ME|LINE|L1 -134325 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 1349-2 chr4 82016734 82017074 + 7 NA Intergenic Intergenic 357087 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 3378 chr19 51861939 51862979 + 7 NA intron (NM_001370455, intron 5 of 6) intron (NM_001370455, intron 5 of 6) 25477 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 2411 chr18 13597556 13598494 + 7 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -13089 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 1296-5 chr5 28217367 28217718 + 7 NA Intergenic L1MC5a|LINE|L1 70123 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 2362 chr15 61382900 61383880 + 7 NA Intergenic LTR40a|LTR|ERVL -154088 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 1252-11 chrX 58441778 58442119 + 7 NA Intergenic ALR/Alpha|Satellite|centr -531315 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 1228-7 chr4 100158748 100159225 + 7 NA Intergenic Intergenic -31047 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 2227 chr10 93126734 93127260 + 7 NA Intergenic Tigger18a|DNA|TcMar-Tigger 53104 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 1139-9 chr8 88449067 88449343 + 7 NA Intergenic Intergenic -121722 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 1282-5 chr8 54756120 54756565 + 7 NA Intergenic Intergenic 140246 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 759-7 chr1 214757721 214757885 + 7 NA Intergenic LTR8B|LTR|ERV1 154608 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 4071 chr19 30183111 30184596 + 7 NA Intergenic L1PA5|LINE|L1 -188531 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 793-31 chr21 21544422 21544602 + 7 NA Intergenic Intergenic 192807 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 2562 chr2 89830210 89831381 + 7 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -192888 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 1017-21 chr7 45539478 45539663 + 7 NA Intergenic L1MB7|LINE|L1 -34570 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 1430 chr7 37172636 37172928 + 7 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 174986 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 1166-2 chr18 14029591 14030038 + 7 NA Intergenic L1M4c|LINE|L1 102621 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 1288-5 chr5 179033477 179033889 + 7 NA 3' UTR (NM_001136116, exon 5 of 5) 3' UTR (NM_001136116, exon 5 of 5) 9879 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 1756-3 chr8 117297949 117298608 + 7 NA Intergenic Intergenic 163283 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 2164-2 chr7 5060900 5061559 + 7 NA intron (NM_001204513, intron 4 of 5) MIR|SINE|MIR -10831 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 955-26 chr8 135371942 135372278 + 7 NA Intergenic Intergenic -85346 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 890-11 chr14 82848802 82849054 + 7 NA Intergenic L1MA6|LINE|L1 206296 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1888-2 chr10 119355824 119356651 + 7 NA intron (NM_005308, intron 2 of 15) intron (NM_005308, intron 2 of 15) -21735 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 1897 chr20 59800045 59800534 + 7 NA intron (NM_080672, intron 7 of 12) L1MEc|LINE|L1 79079 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1208-17 chr6 140804603 140804974 + 7 NA Intergenic Intergenic 120974 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 1327-8 chr4 105096067 105096387 + 7 NA Intergenic L1M4|LINE|L1 -49648 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 1843 chr17 51867606 51868008 + 7 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 290907 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 1785 chr7 57445118 57445740 + 7 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -4748 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 1634-2 chr12 37936722 37937307 + 7 NA Intergenic ALR/Alpha|Satellite|centr -379760 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 3437 chr19 27574393 27575647 + 7 NA Intergenic ALR/Alpha|Satellite|centr -218411 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1383-8 chr8 91673360 91673816 + 7 NA Intergenic Intergenic 344092 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 3137 chr1 244576620 244577879 + 7 NA intron (NM_001130957, intron 11 of 21) Tigger13a|DNA|TcMar-Tigger -75799 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 3334 chr1 246984869 246985901 + 7 NA TTS (NM_020394) TTS (NM_020394) 22672 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 1354-5 chr3 20613956 20614556 + 7 NA Intergenic L1M4c|LINE|L1 271788 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 2114-3 chr9 34855433 34856086 + 7 NA Intergenic L1PA10|LINE|L1 -17173 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 3652 chr20 31053316 31054295 + 7 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -203859 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 1053-12 chr2 63129525 63129899 + 7 NA intron (NR_148704, intron 18 of 18) MER2|DNA|TcMar-Tigger -10170 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 1221-8 chr9 12103555 12103750 + 7 NA Intergenic Intergenic -589733 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 1723-3 chr4 89545185 89546062 + 7 NA Intergenic MER44A|DNA|TcMar-Tigger -237823 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 1587 chr2 51245829 51246235 + 7 NA intron (NR_135237, intron 2 of 10) MamSINE1|SINE|tRNA-RTE 213431 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 1654-2 chrUn_KI270438v1 112016 112501 + 7 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 1200-3 chr19 58168775 58169111 + 7 NA Intergenic AluSq2|SINE|Alu -14046 NM_001278734 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 1486-2 chr18 77078527 77078837 + 7 NA intron (NM_001025100, intron 2 of 3) intron (NM_001025100, intron 2 of 3) 54101 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 1465 chr3 97299546 97299895 + 7 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -139887 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 1213-5 chr17 16549275 16549689 + 7 NA 3' UTR (NM_001346167, exon 6 of 6) 3' UTR (NM_001346167, exon 6 of 6) 19722 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 1886-2 chr20 58485810 58486363 + 7 NA intron (NR_130908, intron 1 of 1) L1ME3F|LINE|L1 28852 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 1647-4 chr2 173526573 173527090 + 7 NA Intergenic L1M2|LINE|L1 171959 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 1947-4 chr5 46089659 46090437 + 7 NA Intergenic ALR/Alpha|Satellite|centr -393668 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 2272-3 chr8 91684452 91685306 + 7 NA Intergenic L1MA9|LINE|L1 332801 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 1177-5 chr5 66483296 66483616 + 7 NA Intergenic L1MB7|LINE|L1 28148 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 1238-3 chr10 115293238 115293535 + 7 NA intron (NM_207303, intron 15 of 28) L1MA5A|LINE|L1 200021 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 939-13 chr2 95222920 95223234 + 7 NA Intergenic L1ME1|LINE|L1 -51372 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 1567-5 chr7 20490085 20490783 + 7 NA Intergenic Intergenic -125233 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 1412-2 chr16 83399194 83399664 + 7 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -108917 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 719-62 chr5 58316493 58316640 + 7 NA Intergenic L1ME4b|LINE|L1 143520 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 1173-15 chr9 35144301 35144539 + 7 NA Intergenic MER51-int|LTR|ERV1 -17589 NM_001371189 1615-3 chr7 56152287 56152653 + 7 NA Intergenic SVA_D|Retroposon|SVA -36053 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 1027-15 chr5 141382286 141382554 + 7 NA promoter-TSS (NM_032087) promoter-TSS (NM_032087) -322 NM_032087 56108 Hs.368160 NM_018920 ENSG00000253537 PCDHGA7 PCDH-GAMMA-A7 protocadherin gamma subfamily A, 7 protein-coding 1129-9 chr2 79139427 79139700 + 7 NA Intergenic Intergenic -1136 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 1142-6 chr5 94657656 94657901 + 7 NA intron (NM_032290, intron 9 of 20) L1M2b|LINE|L1 39109 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 1490 chr10 75253385 75254046 + 7 NA Intergenic L1MEd|LINE|L1 -17758 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 2510-2 chr9 31955729 31956394 + 7 NA Intergenic L1MA9|LINE|L1 -428542 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 1489 chr1 227660628 227661085 + 7 NA 3' UTR (NM_001367910, exon 5 of 5) 3' UTR (NM_001367910, exon 5 of 5) 36851 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 804-41 chr3 39971868 39972052 + 7 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -128051 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 1008-3 chr11 98835008 98835395 + 7 NA Intergenic Intergenic -185748 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 727-27 chr12 129395925 129396108 + 7 NA intron (NM_133448, intron 3 of 8) (AT)n|Simple_repeat|Simple_repeat 187415 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 1343-3 chr12 128658186 128658598 + 7 NA intron (NM_001136103, intron 4 of 8) intron (NM_001136103, intron 4 of 8) 165566 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 1101-6 chr2 40611606 40611892 + 7 NA Intergenic L1MEd|LINE|L1 -99314 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 1966-2 chr7 51501857 51502672 + 7 NA Intergenic Intergenic -109008 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 1900 chr10 34025443 34026093 + 7 NA Intergenic Intergenic -253088 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 1374-2 chr11 3347957 3348447 + 7 NA Intergenic L1MA8|LINE|L1 30944 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 2412 chr5 150930043 150930710 + 7 NA TTS (NR_026867) TTS (NR_026867) 16208 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 1102-6 chr17 74620257 74620468 + 7 NA intron (NM_181449, intron 1 of 3) AluSx1|SINE|Alu 3376 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 1441-4 chr4 49144537 49145136 + 7 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 158194 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 2177 chr11 127289451 127290256 + 7 NA intron (NR_120580, intron 1 of 2) L1PB4|LINE|L1 18783 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 1257-7 chr5 92512597 92513119 + 7 NA Intergenic L1MB8|LINE|L1 1058485 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 3228 chr1 227655632 227656572 + 7 NA 3' UTR (NM_001367910, exon 5 of 5) 3' UTR (NM_001367910, exon 5 of 5) 41605 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 1512 chr12 1177947 1178368 + 7 NA intron (NR_027948, intron 7 of 19) intron (NR_027948, intron 7 of 19) 150409 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 1476-7 chr7 68332590 68333028 + 7 NA Intergenic Intergenic 312556 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 1012-14 chr8 122414160 122414362 + 7 NA TTS (NR_131202) TTS (NR_131202) 154383 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 2370 chr17 73730436 73731135 + 7 NA Intergenic L2c|LINE|L2 -7069 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 2413 chr14 68616873 68617653 + 7 NA intron (NM_001321818, intron 10 of 10) L1MEc|LINE|L1 11524 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1964 chr10 41881825 41882462 + 7 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 485902 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 5525 chr7 6675455 6677332 + 7 NA Intergenic Intergenic 30554 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 3004 chr7 4352416 4353223 + 7 NA Intergenic L1MB3|LINE|L1 -217982 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 1124-5 chr21 30763808 30764239 + 7 NA Intergenic Intergenic -8595 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 1339-6 chr4 49634155 49634603 + 7 NA Intergenic (GAATG)n|Satellite|Satellite 647737 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 3469 chr6 56172106 56173096 + 7 NA intron (NM_030820, intron 3 of 29) L1MB1|LINE|L1 74979 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 3800 chr19 34758750 34760100 + 7 NA exon (NM_001007248, exon 4 of 4) exon (NM_001007248, exon 4 of 4) 13790 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 1215-5 chr19 37563873 37564142 + 7 NA TTS (NM_016536) TTS (NM_016536) 12633 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 1588-3 chr9 29457450 29457927 + 7 NA Intergenic Intergenic -244087 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1515-3 chr20 58484508 58485131 + 7 NA intron (NR_130908, intron 1 of 1) L1ME4b|LINE|L1 30119 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 2016 chr8 121068512 121069044 + 7 NA Intergenic L1M4b|LINE|L1 -256732 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 1237-5 chr5 8921525 8921946 + 7 NA Intergenic L1ME3A|LINE|L1 82003 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 1236-6 chr8 52805778 52806321 + 7 NA Intergenic Intergenic -91583 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 1594-2 chr5 35557413 35557945 + 7 NA Intergenic L1M3b|LINE|L1 -60184 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 1865 chr2 66311644 66312337 + 7 NA Intergenic Intergenic 46338 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 1434 chr10 48283384 48283817 + 7 NA Intergenic MER115|DNA|hAT-Tip100 -8904 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 4788 chr3 139802234 139803775 + 7 NA Intergenic Intergenic -124954 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 1140-6 chr19 53244955 53245178 + 7 NA intron (NM_001317998, intron 3 of 4) L1MA10|LINE|L1 9784 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 2748 chr7 6694259 6695420 + 7 NA intron (NM_006956, intron 4 of 5) intron (NM_006956, intron 4 of 5) 12108 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 1253-4 chr18 10042837 10043190 + 7 NA Intergenic L1M4|LINE|L1 128997 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 1882 chr5 110802032 110802674 + 7 NA Intergenic L1PA15-16|LINE|L1 63346 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 1668-2 chr19 24332364 24332715 + 7 NA Intergenic ALR/Alpha|Satellite|centr -169092 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1081-14 chr7 4863159 4863470 + 7 NA intron (NM_018059, intron 2 of 14) L1MEd|LINE|L1 -1284 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 2120-2 chr2 112998138 112998827 + 7 NA Intergenic L1ME3D|LINE|L1 -6977 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 2657 chr11 26378042 26378697 + 7 NA intron (NM_031418, intron 1 of 26) (TATC)n|Simple_repeat|Simple_repeat 46239 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 1476 chr11 54917731 54918085 + 7 NA Intergenic ALR/Alpha|Satellite|centr 211076 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 1507-3 chr8 131620216 131620518 + 7 NA Intergenic L1PA16|LINE|L1 -283726 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 1176-4 chr14 79574252 79574587 + 7 NA intron (NR_073547, intron 15 of 20) MIR|SINE|MIR 295039 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1896 chr7 4430425 4430884 + 7 NA Intergenic L1M3|LINE|L1 -251641 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1223-13 chr6 145991503 145991822 + 7 NA Intergenic Intergenic -27304 NM_001370327 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 1305-5 chr4 99980049 99980507 + 7 NA intron (NR_125923, intron 1 of 3) L1MC4|LINE|L1 29784 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 1099-5 chr11 79349673 79350161 + 7 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 52192 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 960-15 chr18 68267828 68268136 + 7 NA Intergenic Intergenic 447126 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 2246 chr18 10945554 10946346 + 7 NA intron (NM_022068, intron 3 of 51) L1MEc|LINE|L1 -186301 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 1098-5 chr4 64460744 64460925 + 7 NA Intergenic L1PA11|LINE|L1 -51374 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 895-12 chr16 73518417 73518589 + 7 NA Intergenic Intergenic 131698 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 4070 chr7 22618438 22619808 + 7 NA Intergenic L1MEg|LINE|L1 46410 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 5016 chr21 28373181 28374785 + 7 NA Intergenic L1PB2|LINE|L1 -145316 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 1217 chr16 76186900 76187234 + 7 NA Intergenic L1P4a|LINE|L1 -90334 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 1213-11 chr7 88871321 88871612 + 7 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -75729 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 1254-7 chr5 160284551 160284865 + 7 NA intron (NR_131769, intron 2 of 7) intron (NR_131769, intron 2 of 7) 27856 NM_001308173 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 1268-10 chr3 158040728 158041098 + 7 NA Intergenic L1PBb|LINE|L1 65250 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 934-14 chr15 98356635 98357091 + 7 NA intron (NR_146567, intron 1 of 2) L1MC|LINE|L1 -25305 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 1337-4 chr22 27228262 27228643 + 7 NA Intergenic L1MC5a|LINE|L1 -3773 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 1241-10 chr4 43511633 43512191 + 7 NA Intergenic Intergenic -19369 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 939-15 chr20 204401 204677 + 7 NA Intergenic Intergenic -14828 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 1219-5 chr2 7922980 7923229 + 7 NA non-coding (NR_015405, exon 3 of 3) non-coding (NR_015405, exon 3 of 3) -23449 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 2534 chr5 155794846 155795714 + 7 NA Intergenic L1MEg|LINE|L1 -531477 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 1116-15 chrUn_KI270336v1 20 235 + 7 NA NA SAR|Satellite|Satellite NA NA 1178-10 chr7 130479665 130479927 + 7 NA Intergenic L1M5|LINE|L1 -6379 NM_177524 4232 Hs.270978 NM_002402 ENSG00000106484 MEST PEG1 mesoderm specific transcript protein-coding 3684 chr7 7448883 7450182 + 7 NA intron (NM_001037763, intron 18 of 34) L1M5|LINE|L1 86341 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 1778 chr12 34551424 34551971 + 7 NA Intergenic ALR/Alpha|Satellite|centr 529201 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 2260 chr10 32737312 32738176 + 7 NA intron (NM_001321115, intron 29 of 43) L1MCa|LINE|L1 163728 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 1258-2 chr10 65049407 65049717 + 7 NA Intergenic Intergenic -125044 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 1005-5 chr12 32044624 32044890 + 7 NA Intergenic Intergenic -62050 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 1180-4 chr11 55045266 55045510 + 7 NA Intergenic ALR/Alpha|Satellite|centr -216767 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 3269 chr18 631775 632910 + 7 NA intron (NM_199167, intron 5 of 8) (TG)n|Simple_repeat|Simple_repeat 15642 NM_199167 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 905-5 chr11 115682010 115682254 + 7 NA Intergenic Intergenic 52630 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 1520-6 chr8 141889471 141889973 + 7 NA Intergenic MER20B|DNA|hAT-Charlie -103409 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 1732 chr7 25446643 25447423 + 6 NA Intergenic MIR|SINE|MIR 216107 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 1280-4 chr3 131662048 131662397 + 6 NA intron (NM_130808, intron 7 of 15) intron (NM_130808, intron 7 of 15) -159251 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 851-35 chr4 113420775 113420968 + 6 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 128032 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 1114-4 chr4 87244977 87245295 + 6 NA Intergenic L1MB7|LINE|L1 -24518 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 1848 chr1 238764405 238765161 + 6 NA Intergenic Tigger1|DNA|TcMar-Tigger -278766 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 959-35 chr8 100582205 100582483 + 6 NA intron (NM_152628, intron 12 of 13) intron (NM_152628, intron 12 of 13) -22585 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 1557-4 chr7 7482990 7483669 + 6 NA intron (NM_001037763, intron 13 of 34) Tigger5b|DNA|TcMar-Tigger 52544 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 3228-2 chr5 46318652 46320037 + 6 NA Intergenic ALR/Alpha|Satellite|centr -622964 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1602-6 chr20 46498403 46498875 + 6 NA TTS (NM_001353824) TTS (NM_001353824) 14933 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 2066 chr2 62373264 62373995 + 6 NA Intergenic Charlie8|DNA|hAT-Charlie 132566 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 1635-2 chr13 73439350 73439753 + 6 NA Intergenic MLT1D|LTR|ERVL-MaLR -124693 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 1084-20 chr5 118268524 118268735 + 6 NA Intergenic L2a|LINE|L2 -13945 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 1676 chr2 89836412 89837237 + 6 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -198917 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 3422 chr6 27452046 27453181 + 6 NA exon (NM_001318893, exon 6 of 6) exon (NM_001318893, exon 6 of 6) 20285 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 2082 chr14 69945608 69946148 + 6 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -32255 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 1086-9 chr11 77564284 77564602 + 6 NA Intergenic L1MA3|LINE|L1 -6646 NR_130930 646029 Hs.609654 NM_001039908 LOC646029 - uncharacterized LOC646029 ncRNA 2076 chr5 46262832 46263384 + 6 NA Intergenic ALR/Alpha|Satellite|centr -566728 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 944-14 chr2 39477731 39478004 + 6 NA intron (NR_037875, intron 3 of 5) MSTA|LTR|ERVL-MaLR 40451 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 947-10 chr17 51495166 51495397 + 6 NA Intergenic HAL1|LINE|L1 59854 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 1325-5 chr6 40078637 40079055 + 6 NA Intergenic L1M5|LINE|L1 -144384 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 4953 chr8 144841053 144842987 + 6 NA exon (NM_001349806, exon 5 of 5) exon (NM_001349806, exon 5 of 5) 11028 NM_001081004 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 3532 chr10 37895737 37896840 + 6 NA Intergenic Intergenic -38185 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 1975 chr2 18030784 18031486 + 6 NA Intergenic L1M2|LINE|L1 152468 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 2080 chr8 133606042 133606703 + 6 NA Intergenic Intergenic -34485 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1557-3 chr4 71861687 71862249 + 6 NA Intergenic MER4B-int|LTR|ERV1 -56448 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 1001-18 chr7 19161021 19161350 + 6 NA Intergenic Intergenic -15764 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 875-37 chr9 9916370 9916603 + 6 NA intron (NM_002839, intron 5 of 45) L1M2c|LINE|L1 117094 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 935-14 chr15 79144458 79144748 + 6 NA Intergenic THE1B-int|LTR|ERVL-MaLR -53823 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 715-93 chr9 32341794 32341939 + 6 NA Intergenic Intergenic -42737 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 646-94 chr4 38441134 38441329 + 6 NA intron (NR_110951, intron 6 of 7) L1ME1|LINE|L1 -68536 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 1120-11 chr5 154304729 154304915 + 6 NA intron (NM_198321, intron 3 of 11) L1MEc|LINE|L1 -42284 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 1097-15 chr7 123415957 123416271 + 6 NA Intergenic Charlie2a|DNA|hAT-Charlie 116834 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 961-20 chr7 51914310 51914610 + 6 NA Intergenic MIRb|SINE|MIR -521204 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 855-25 chr2 65511204 65511549 + 6 NA Intergenic L1MD3|LINE|L1 -78777 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 4107 chr1 247036969 247038394 + 6 NA exon (NM_001204220, exon 4 of 4) exon (NM_001204220, exon 4 of 4) -29624 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 1284-2 chr14 63145160 63145566 + 6 NA Intergenic L1MA5|LINE|L1 -59080 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 847-19 chr15 51287381 51287652 + 6 NA intron (NR_146310, intron 2 of 2) intron (NR_146310, intron 2 of 2) 822 NM_001347250 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 1527 chr4 156732264 156732832 + 6 NA Intergenic L1MDa|LINE|L1 239251 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 963-29 chr8 53490177 53490381 + 6 NA Intergenic Intergenic 33686 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 1563-2 chr19 27564920 27565475 + 6 NA Intergenic ALR/Alpha|Satellite|centr -228234 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 2211 chr8 129098550 129099186 + 6 NA Intergenic L1MEg|LINE|L1 -132867 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 1086-15 chr2 128082963 128083448 + 6 NA Intergenic Intergenic -7995 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 880-34 chr5 62983832 62984230 + 6 NA Intergenic L1M5|LINE|L1 405212 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 1554-2 chr14 62352855 62353217 + 6 NA Intergenic L1PA4|LINE|L1 -213063 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1646 chr21 28370993 28371624 + 6 NA Intergenic L1MA3|LINE|L1 -142641 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 882-17 chr18 4362574 4362876 + 6 NA intron (NM_001242761, intron 1 of 11) L1MB3|LINE|L1 92541 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 1677 chr6 63182684 63183420 + 6 NA Intergenic Intergenic 136925 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 821-52 chr8 43237752 43237900 + 6 NA Intergenic SAR|Satellite|Satellite -54616 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 1088-14 chr8 115308861 115309210 + 6 NA Intergenic THE1A-int|LTR|ERVL-MaLR 358978 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 905-13 chr17 65186598 65186876 + 6 NA intron (NM_003835, intron 9 of 18) MIRb|SINE|MIR 49367 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 2697 chr7 62753258 62754325 + 6 NA Intergenic ALR/Alpha|Satellite|centr 550265 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 897-19 chr2 34834012 34834293 + 6 NA Intergenic Intergenic 156595 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 774-78 chr6 17368359 17368579 + 6 NA Intergenic L1ME1|LINE|L1 -25036 NM_001363533 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 1085-7 chr18 4805247 4805743 + 6 NA Intergenic Intergenic -275687 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 2860 chr10 76273874 76274924 + 6 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 491638 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 3027 chr7 64711780 64712975 + 6 NA TTS (NM_001282359) TTS (NM_001282359) 33313 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 1031 chr11 4570627 4570880 + 6 NA Intergenic Intergenic -16038 NM_001005170 143502 Hs.553607 NM_001005170 ENSG00000226288 OR52I2 OR11-12|OR52I1 olfactory receptor family 52 subfamily I member 2 protein-coding 5880 chr5 179079667 179081612 + 6 NA 3' UTR (NM_014594, exon 5 of 5) 3' UTR (NM_014594, exon 5 of 5) 20266 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 1431-3 chr3 54728370 54728837 + 6 NA intron (NM_018398, intron 11 of 37) L1ME3|LINE|L1 -88746 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 834-42 chr7 9927791 9928023 + 6 NA Intergenic L1MEf|LINE|L1 293637 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 1939-2 chr8 72376610 72377192 + 6 NA Intergenic L1PA15-16|LINE|L1 -125267 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 1239-5 chr7 113960951 113961398 + 6 NA Intergenic Intergenic -42165 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 2283 chr5 124153960 124155197 + 6 NA intron (NR_125774, intron 4 of 5) L1MEc|LINE|L1 283942 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 1524-6 chr9 31626450 31627151 + 6 NA Intergenic Intergenic -245310 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 1299 chr14 32309453 32309894 + 6 NA Intergenic MLT1A|LTR|ERVL-MaLR -19625 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 756-28 chr2 122762646 122762831 + 6 NA Intergenic L1M3d|LINE|L1 310743 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 1046-6 chr17_GL000205v2_random 3585 3905 + 6 NA Intergenic CER|Satellite|Satellite 54221 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 1158-8 chr4 105260438 105260782 + 6 NA intron (NM_001127208, intron 7 of 10) (TACAAT)n|Simple_repeat|Simple_repeat 92271 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 2105-3 chr3 72734663 72735243 + 6 NA Intergenic Intergenic -70704 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 5479 chr22 27349527 27351445 + 6 NA Intergenic Intergenic 39835 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 1140-9 chr5 82808836 82809337 + 6 NA Intergenic THE1B|LTR|ERVL-MaLR -31069 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 922-24 chr3 177897786 177898048 + 6 NA non-coding (NR_110826, exon 3 of 3) non-coding (NR_110826, exon 3 of 3) 81052 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 551-154 chr5 45822493 45822663 + 6 NA Intergenic Intergenic -126198 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 870-31 chr5 91070419 91070609 + 6 NA intron (NR_003149, intron 85 of 89) intron (NR_003149, intron 85 of 89) 243888 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 1234 chr10 85808354 85808863 + 6 NA intron (NM_017551, intron 8 of 15) L1MEg|LINE|L1 230877 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 1002-4 chr15 96664037 96664295 + 6 NA Intergenic MSTD|LTR|ERVL-MaLR 117488 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 1138-15 chr9 126243193 126243516 + 6 NA Intergenic L1ME3Cz|LINE|L1 32561 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 1111-3 chr12 34452751 34453139 + 6 NA Intergenic ALR/Alpha|Satellite|centr 430449 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1409-5 chr5 150899275 150899730 + 6 NA intron (NM_001172832, intron 2 of 4) MIR3|SINE|MIR 5481 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 904-13 chr14 44674127 44674380 + 6 NA Intergenic Intergenic 124873 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 1158-10 chr6 86438460 86438853 + 6 NA Intergenic Intergenic -498872 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 1249-4 chr2 226106161 226106524 + 6 NA Intergenic Intergenic -36452 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 820-38 chr4 44529877 44530105 + 6 NA Intergenic MER3|DNA|hAT-Charlie -81182 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 2014 chr7 22645164 22645707 + 6 NA Intergenic L1MA9|LINE|L1 20098 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 1017-16 chr5 58213661 58213949 + 6 NA Intergenic Intergenic -91464 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 1255-7 chr2 95242150 95242443 + 6 NA Intergenic L1PA16|LINE|L1 -32153 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 1229-2 chr16 68562045 68562376 + 6 NA intron (NM_001305204, intron 4 of 4) L1ME2z|LINE|L1 22919 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 1082-5 chr16 22985366 22985700 + 6 NA Intergenic L2b|LINE|L2 163737 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 1143-10 chr22 25037532 25037875 + 6 NA intron (NM_001145206, intron 2 of 10) L1MB5|LINE|L1 9729 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 2941 chr10 38528990 38529880 + 6 NA Intergenic Intergenic 101289 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 940-40 chr8 139685045 139685290 + 6 NA intron (NR_104210, intron 1 of 3) L1M5|LINE|L1 17956 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1589-3 chr10 83733090 83733764 + 6 NA Intergenic L1MA8|LINE|L1 -56338 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 680-72 chr20 2052299 2052563 + 6 NA Intergenic LTR16A|LTR|ERVL -49396 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 476-159 chr20 12292964 12293117 + 6 NA Intergenic MIRb|SINE|MIR 375147 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 700-64 chr3 103953797 103954030 + 6 NA Intergenic Intergenic -429797 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 1165-9 chr3 74816573 74816934 + 6 NA Intergenic Intergenic -295613 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 1408-2 chr20 9135122 9135769 + 6 NA intron (NM_001172646, intron 1 of 37) MIR3|SINE|MIR 66391 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 1375-2 chr10 62687365 62687823 + 6 NA Intergenic Intergenic -117126 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 999-3 chr1 189127027 189127359 + 6 NA Intergenic L1MA4A|LINE|L1 1348817 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 1024-21 chr7 5062058 5062323 + 6 NA intron (NM_001204513, intron 4 of 5) intron (NM_001204513, intron 4 of 5) -9870 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1157-8 chr20 6804982 6805359 + 6 NA Intergenic L1M4a2|LINE|L1 37484 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 1238-7 chr7 62889399 62889782 + 6 NA Intergenic ALR/Alpha|Satellite|centr 414466 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 938-27 chr8 130904675 130904937 + 6 NA intron (NM_001115, intron 6 of 17) Tigger12|DNA|TcMar-Tigger 136103 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 1587-2 chr20 12407859 12408685 + 6 NA Intergenic Intergenic 490379 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 1397 chr22 44419628 44420145 + 6 NA Intergenic L1MC3|LINE|L1 -23441 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 941-20 chr4 53264802 53265146 + 6 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 101087 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 1408-10 chr8 123996524 123997007 + 6 NA intron (NM_001039112, intron 12 of 40) L1M1|LINE|L1 44017 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 1168-5 chr8 116437027 116437379 + 6 NA Intergenic L2a|LINE|L2 -112144 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 1411-3 chr7 7483711 7484324 + 6 NA intron (NM_001037763, intron 13 of 34) L1MEd|LINE|L1 51856 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 1547 chr10 77653355 77653822 + 6 NA Intergenic L1MEd|LINE|L1 -15780 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 1191-5 chr8 133616119 133616531 + 6 NA Intergenic L1ME3A|LINE|L1 -44438 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1920-2 chr6 27383281 27384123 + 6 NA intron (NM_001322288, intron 1 of 3) MLT1A|LTR|ERVL-MaLR -5016 NM_001322293 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 3459 chr2 24893797 24895045 + 6 NA intron (NM_001320613, intron 2 of 21) AluJr|SINE|Alu 25816 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 1333 chr20 6315092 6315509 + 6 NA Intergenic Intergenic -111432 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 800-23 chr15 63937685 63937999 + 6 NA intron (NM_014326, intron 5 of 11) intron (NM_014326, intron 5 of 11) 9568 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 1065-11 chr6 71419359 71419553 + 6 NA intron (NR_026807, intron 1 of 3) intron (NR_026807, intron 1 of 3) 1289 NR_026807 79940 Hs.368337 NR_026807 ENSG00000233237 LINC00472 C6orf155|P53RRA long intergenic non-protein coding RNA 472 ncRNA 1028-13 chr5 41969899 41970185 + 6 NA Intergenic MERX|DNA|TcMar-Tigger 44761 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 1880 chr2 129267701 129268251 + 6 NA intron (NR_122042, intron 1 of 3) L1MA9|LINE|L1 5915 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 992-5 chr12 40072787 40073131 + 6 NA intron (NM_052885, intron 1 of 9) L1MCa|LINE|L1 33122 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 1882-2 chr7 71051592 71052407 + 6 NA Intergenic L1MA8|LINE|L1 -80145 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 1899-2 chr2 30810971 30811351 + 6 NA Intergenic AluSz|SINE|Alu -3715 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 1475 chr2 196005320 196005816 + 6 NA intron (NM_018897, intron 10 of 64) L1MB7|LINE|L1 63269 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 802-67 chr7 92787922 92788148 + 6 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 45924 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 3059 chr7 6672645 6673531 + 6 NA Intergenic Intergenic 33859 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 1136-3 chr12 133116918 133117319 + 6 NA Intergenic L2|LINE|L2 13355 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 1642-2 chr4 61185213 61185906 + 6 NA Intergenic L1M2c|LINE|L1 -15671 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 932-28 chr7 1685767 1686141 + 6 NA Intergenic Intergenic -2165 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 1545-2 chr8 89051310 89052033 + 6 NA Intergenic L1M5|LINE|L1 706040 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 2515 chr1 227648963 227649854 + 6 NA intron (NM_178549, intron 3 of 3) AluSq2|SINE|Alu 48299 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 1681 chr10 66424652 66425314 + 6 NA intron (NM_001127384, intron 11 of 17) L1MEd|LINE|L1 -501053 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 1223-4 chr17 61349656 61350026 + 6 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 17863 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 1035-5 chr13 85275555 85275750 + 6 NA Intergenic Intergenic -87951 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 876-21 chr2 166844018 166844295 + 6 NA Intergenic Intergenic -44331 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 1797 chr1 113472617 113473224 + 6 NA intron (NM_001142782, intron 1 of 20) L1MA9|LINE|L1 82405 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 1185-6 chr4 58727467 58727878 + 6 NA Intergenic L1M5|LINE|L1 -191344 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 581-80 chr2 89833264 89833441 + 6 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -195445 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 1925-2 chr22 34845040 34845635 + 6 NA intron (NR_138042, intron 3 of 4) (TA)n|Simple_repeat|Simple_repeat 152579 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1182-7 chr19 27576143 27576509 + 6 NA Intergenic ALR/Alpha|Satellite|centr -217105 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 2221 chr19 43870240 43871112 + 6 NA Intergenic L1MEf|LINE|L1 9460 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 909-27 chr7 90393457 90393713 + 6 NA Intergenic Intergenic -2707 NR_102424 101409256 NR_102424 LOC101409256 - cell division cycle 42 pseudogene pseudo 1076-7 chr11 79576414 79576634 + 6 NA Intergenic Intergenic -135494 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 1128-13 chr5 159672847 159673059 + 6 NA Intergenic MSTB-int|LTR|ERVL-MaLR 198431 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 2118 chr11 50532122 50532916 + 6 NA Intergenic ALR/Alpha|Satellite|centr 123372 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 784-10 chr10 54316580 54316795 + 6 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -169543 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 942-17 chr2 154807347 154807760 + 6 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 108858 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 1408-8 chr6 91196233 91196824 + 6 NA Intergenic Intergenic -325132 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 679-17 chr10 111847088 111847327 + 6 NA Intergenic Intergenic 336558 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 1221-5 chr6 61511748 61512168 + 6 NA Intergenic ALR/Alpha|Satellite|centr -62172 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 1026-4 chr1 179714633 179714895 + 6 NA Intergenic L1M3b|LINE|L1 -13012 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 979-4 chr11 30904479 30904762 + 6 NA intron (NM_001367979, intron 31 of 38) intron (NM_001367979, intron 31 of 38) 88066 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 1096-10 chr3 153362564 153362862 + 6 NA Intergenic Intergenic -121782 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 2011 chr21 31035925 31036574 + 6 NA Intergenic Intergenic 2227 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 1347-3 chr4 30588978 30589384 + 6 NA Intergenic Intergenic -131188 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 940-22 chr3 143637744 143638028 + 6 NA intron (NM_173653, intron 6 of 15) intron (NM_173653, intron 6 of 15) 210582 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 759-58 chr5 67827561 67827731 + 6 NA Intergenic Intergenic 34433 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 1140-10 chr5 129632892 129633295 + 6 NA intron (NM_133638, intron 10 of 22) L1MEf|LINE|L1 -115001 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 925-8 chr11 30227411 30227695 + 6 NA Intergenic LTR8B|LTR|ERV1 -3461 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 1689 chr1 182689587 182690201 + 6 NA Intergenic Intergenic -16962 NM_033345 85397 Hs.20982 NM_033345 ENSG00000135824 RGS8 - regulator of G protein signaling 8 protein-coding 1176 chr10 9852181 9852524 + 6 NA Intergenic L1ME3B|LINE|L1 -206370 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 774-77 chr5 178966482 178966659 + 6 NA TTS (NM_182594) TTS (NM_182594) 25372 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 2419 chr3 122154536 122155818 + 6 NA Intergenic L1M2|LINE|L1 -28491 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 1813-2 chr3 122582397 122583006 + 6 NA intron (NM_001113523, intron 1 of 11) L1MEc|LINE|L1 5051 NM_001308320 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 722-41 chr18 5140705 5140922 + 6 NA Intergenic HAL1b|LINE|L1 56444 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 1536 chr4 167023521 167023898 + 6 NA intron (NM_001204354, intron 2 of 9) intron (NM_001204354, intron 2 of 9) 210717 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 926-8 chr11 115470577 115470844 + 6 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 33705 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 1016-24 chr8 135089625 135089976 + 6 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat -144331 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1033-3 chr15 62157957 62158333 + 6 NA Intergenic L1M1|LINE|L1 7140 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 2738 chr11 8899011 8900125 + 6 NA intron (NM_005418, intron 1 of 22) L1M4a2|LINE|L1 11383 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 763-18 chr14 61504712 61504992 + 6 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 65342 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 1791-2 chr6 61493122 61493825 + 6 NA Intergenic ALR/Alpha|Satellite|centr -80657 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 1136-12 chr8 122333526 122333887 + 6 NA Intergenic MIRb|SINE|MIR 234938 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1906 chr18 2430601 2431387 + 6 NA Intergenic Intergenic 140511 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 735-29 chr17 26820910 26821076 + 6 NA Intergenic Intergenic 268248 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 1318-3 chr6 155924895 155925421 + 6 NA Intergenic L1MEd|LINE|L1 -21639 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 2085-2 chr8 124948238 124949068 + 6 NA intron (NR_027321, intron 3 of 3) Tigger5b|DNA|TcMar-Tigger 6645 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 1306-4 chr3 13187400 13187883 + 6 NA Intergenic L2a|LINE|L2 -114212 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 849-36 chr5 43801431 43801737 + 6 NA Intergenic MLT1J1|LTR|ERVL-MaLR -198354 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 848-18 chr18 2074281 2074496 + 6 NA Intergenic Intergenic 497117 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 4018 chr8 86238700 86239987 + 6 NA Intergenic L1MC2|LINE|L1 -8962 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 2338 chr10 38526729 38527712 + 6 NA Intergenic Intergenic 99074 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 1123-9 chr19 36416073 36416438 + 6 NA intron (NM_001321917, intron 1 of 4) intron (NM_001321917, intron 1 of 4) 2389 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 1615-2 chr17 52858523 52859148 + 6 NA Intergenic Intergenic -3286 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 1046-3 chr12 55616000 55616258 + 6 NA Intergenic Intergenic -20763 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 1275-3 chr2 79549831 79550271 + 6 NA intron (NM_001282598, intron 1 of 17) HERVL-int|LTR|ERVL 26868 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 849-15 chr15 82002065 82002314 + 6 NA Intergenic L1M2|LINE|L1 43829 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 863-26 chr21 18220913 18221131 + 6 NA intron (NM_001204178, intron 2 of 5) L1MA4|LINE|L1 -23811 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 914-2 chr10 43740830 43741089 + 6 NA Intergenic Intergenic 37866 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 1120-8 chr21 28684972 28685299 + 6 NA Intergenic Intergenic 145817 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 908-26 chr3 29172305 29172485 + 6 NA Intergenic Intergenic 108544 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 1165 chr1 204738894 204739221 + 6 NA Intergenic L1MB8|LINE|L1 -53319 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 1233-7 chr5 127017363 127017702 + 6 NA intron (NM_178450, intron 1 of 4) MER47A|DNA|TcMar-Tigger 13026 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 1341-4 chr6 64928404 64929067 + 6 NA intron (NM_001292009, intron 15 of 43) (ATTTTA)n|Simple_repeat|Simple_repeat -372683 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 786-8 chr10 42532800 42532974 + 6 NA intron (NR_026777, intron 5 of 7) L1M4c|LINE|L1 19983 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 2388 chr20 59657870 59658653 + 6 NA intron (NM_001281507, intron 1 of 12) L1M4b|LINE|L1 -18400 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 535-24 chr10 15307809 15308081 + 6 NA intron (NM_001010924, intron 1 of 7) AluJr|SINE|Alu 63344 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 992-17 chr5 180832478 180832695 + 6 NA promoter-TSS (NR_045680) promoter-TSS (NR_045680) -968 NR_045680 100859930 Hs.655606 NR_045680 ENSG00000278970 HEIH HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA ncRNA 1456-5 chr8 83342650 83343153 + 6 NA Intergenic Intergenic -60857 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 983-10 chr20 63145688 63145990 + 6 NA Intergenic L1ME2|LINE|L1 -32661 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 874-7 chr14 22954291 22954580 + 6 NA non-coding (NR_110002, exon 3 of 3) non-coding (NR_110002, exon 3 of 3) 2594 NR_039856 100616424 NR_039856 ENSG00000284118 MIR4707 mir-4707 microRNA 4707 ncRNA 1071-13 chr4 43848108 43848470 + 6 NA Intergenic Intergenic -168572 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 2022 chr2 11889538 11890310 + 6 NA Intergenic Intergenic -52938 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 1176-11 chr8 127488419 127488843 + 6 NA Intergenic L1MDa|LINE|L1 -6492 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 1366-4 chr7 33288500 33288853 + 6 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 159112 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 1533-5 chr2 29469761 29470342 + 6 NA intron (NM_004304, intron 4 of 28) L1ME3|LINE|L1 5326 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 903-40 chr8 121029581 121029910 + 6 NA Intergenic Intergenic -217699 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 2312 chr8 126603875 126604666 + 6 NA Intergenic Charlie7|DNA|hAT-Charlie -45792 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 1516-3 chr5 141259988 141260493 + 6 NA Intergenic Intergenic 14845 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 1020-3 chr10 39106660 39106964 + 6 NA Intergenic ALR/Alpha|Satellite|centr 410216 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 766-10 chr11 69260100 69260376 + 6 NA Intergenic L1M3|LINE|L1 -33917 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 808-58 chr8 129790004 129790318 + 6 NA Intergenic L1MA3|LINE|L1 -3537 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 1150-7 chr7 33067256 33067609 + 6 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -4635 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 916 chr1 160660318 160660596 + 6 NA Intergenic MSTB|LTR|ERVL-MaLR -13146 NM_003037 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 1326-4 chr2 228458907 228459413 + 6 NA Intergenic L1PA15|LINE|L1 152235 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 1302-6 chr7 121757630 121757994 + 6 NA Intergenic Intergenic -115349 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 728-34 chr14 72004165 72004384 + 6 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 70747 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 1015-7 chr18 72099015 72099487 + 6 NA Intergenic MLT2A2|LTR|ERVL -317025 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 1411-2 chr6 69926684 69927139 + 6 NA intron (NM_001858, intron 4 of 50) L1M4|LINE|L1 60355 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 991-10 chr14 70627550 70627852 + 6 NA intron (NR_110071, intron 2 of 2) L1M4|LINE|L1 13597 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 831-46 chr7 54291152 54291441 + 6 NA Intergenic L1ME3G|LINE|L1 -39401 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 1638-2 chr7 87791232 87791846 + 6 NA intron (NM_001134406, intron 8 of 9) L1MA2|LINE|L1 -78216 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 1204-4 chr4 98765839 98766313 + 6 NA Intergenic Intergenic 107174 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 912-14 chr14 78109455 78109734 + 6 NA Intergenic L1MEc|LINE|L1 -60779 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1183-9 chr3 34574441 34574912 + 6 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 776046 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 2357 chr19 36717723 36718697 + 6 NA intron (NM_152603, intron 4 of 4) intron (NM_152603, intron 4 of 4) 14529 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 1460-2 chr5 12511520 12512045 + 6 NA Intergenic L1PA11|LINE|L1 -63075 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 749-48 chr2 7367950 7368182 + 6 NA Intergenic L1ME3E|LINE|L1 -53195 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 729-36 chr2 44404709 44404928 + 6 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 42871 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 1161-10 chr9 116516092 116516494 + 6 NA intron (NR_033973, intron 1 of 11) intron (NR_033973, intron 1 of 11) 12010 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 1743-3 chr15 60276251 60276704 + 6 NA Intergenic L1MC3|LINE|L1 121509 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 1562 chr17 61617743 61618287 + 6 NA Intergenic Intergenic -26796 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 1201-5 chr4 90815873 90816296 + 6 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 581053 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1004-12 chr4 72170695 72170993 + 6 NA Intergenic Intergenic 131712 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 851-44 chr8 79125641 79125884 + 6 NA Intergenic L2a|LINE|L2 -206426 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 1575-3 chr5 72777035 72777858 + 6 NA Intergenic L1MA4|LINE|L1 -39145 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 1202-2 chr12 132899130 132899477 + 6 NA Intergenic MER41D|LTR|ERV1 11461 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 1424-2 chr14 72777816 72778296 + 6 NA intron (NM_001280542, intron 1 of 10) MLT1A|LTR|ERVL-MaLR 114593 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 1616-3 chr19 58259223 58259838 + 6 NA intron (NM_001320782, intron 6 of 6) MLT1D|LTR|ERVL-MaLR -19425 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 720-4 chr1 219452929 219453192 + 6 NA intron (NR_135822, intron 2 of 3) L1ME3|LINE|L1 104264 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 1869 chr2 12863206 12864012 + 6 NA Intergenic MER76|LTR|ERVL 126242 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 1286-4 chr15 96154312 96154702 + 6 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -26666 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 940-19 chr3 20611798 20612132 + 6 NA Intergenic L1M4c|LINE|L1 269497 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 1898 chr3 6050333 6050751 + 6 NA Intergenic L1MA8|LINE|L1 754907 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 1190-11 chr8 134854532 134854958 + 6 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 4810 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 1653 chr18 12557568 12558109 + 6 NA intron (NM_020148, intron 2 of 15) L1MA3|LINE|L1 98894 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 1286-3 chr11 69146483 69146850 + 6 NA TTS (NR_104161) TTS (NR_104161) -9269 NM_001369201 107984345 NM_001369201 SMIM38 - small integral membrane protein 38 protein-coding 1153-9 chr2 46729354 46729866 + 6 NA intron (NM_144949, intron 1 of 1) Tigger3b|DNA|TcMar-Tigger 30315 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 1051-2 chr10 76663148 76663431 + 6 NA Intergenic L1MEd|LINE|L1 -224755 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 969-6 chr11 88073275 88073481 + 6 NA Intergenic L1MA6|LINE|L1 102065 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 1398-2 chr10 62700389 62700852 + 6 NA Intergenic L1MEi|LINE|L1 -104100 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 860-24 chr2 16677440 16677716 + 6 NA Intergenic L1MEd|LINE|L1 -11744 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 1030-7 chr11 14155225 14155483 + 6 NA intron (NM_006108, intron 6 of 15) MSTA|LTR|ERVL-MaLR 192631 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 963-4 chr10 111582850 111583080 + 6 NA Intergenic THE1D|LTR|ERVL-MaLR 468674 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 1112-7 chr22 19317682 19317974 + 6 NA Intergenic L1MC2|LINE|L1 -26109 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 1071-15 chr5 46058554 46058962 + 6 NA Intergenic ALR/Alpha|Satellite|centr -362378 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1115-8 chr20 42516581 42516940 + 6 NA intron (NM_133170, intron 7 of 31) L1ME3A|LINE|L1 -168723 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 897-22 chr2 105835225 105835428 + 6 NA intron (NM_003581, intron 2 of 4) L1MA5|LINE|L1 -16521 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 2237 chr2 59863875 59864626 + 6 NA Intergenic Intergenic 518786 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 858-26 chr2 156662313 156662489 + 6 NA Intergenic Intergenic 226022 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 894-14 chr17 69197478 69197664 + 6 NA intron (NM_080282, intron 11 of 39) L2c|LINE|L2 37441 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 846-3 chr1 190007962 190008177 + 6 NA Intergenic L2a|LINE|L2 467941 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 5836 chr16 35445452 35447616 + 6 NA Intergenic AluSz6|SINE|Alu 34062 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 1236 chr14 52163728 52164106 + 6 NA Intergenic Intergenic -94858 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 1388-4 chr3 137705219 137705616 + 6 NA Intergenic L1M4a1|LINE|L1 -58898 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 1714-2 chr1 224343544 224344107 + 6 NA Intergenic L1M4|LINE|L1 -13054 NM_001277198 29097 Hs.445890 NM_014184 ENSG00000143771 CNIH4 CNIH-4|CNIH2|HSPC163 cornichon family AMPA receptor auxiliary protein 4 protein-coding 1551-2 chr2 59617688 59618317 + 6 NA Intergenic L1MB7|LINE|L1 400294 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 1331-5 chr5 92513158 92513565 + 6 NA Intergenic LTR8B|LTR|ERV1 1057982 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 2744 chr21 28372186 28373105 + 6 NA Intergenic L1PB2|LINE|L1 -143978 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 849-42 chr7 53110666 53110865 + 6 NA Intergenic MIR|SINE|MIR 75132 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 1150 chr10 31442977 31443438 + 6 NA intron (NM_001323646, intron 4 of 11) L1ME3Cz|LINE|L1 -43452 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 674-58 chr22 48312214 48312387 + 6 NA Intergenic Intergenic 37936 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 785-59 chr8 106365590 106365894 + 6 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -82182 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 669-44 chr18 5284490 5284638 + 6 NA Intergenic Intergenic 11162 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 751-77 chr7 145788673 145788898 + 6 NA Intergenic L1MC3|LINE|L1 -952732 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 954-31 chr3 4765701 4765957 + 6 NA intron (NM_001168272, intron 43 of 60) intron (NM_001168272, intron 43 of 60) -14239 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 1167 chr10 39328456 39328849 + 6 NA Intergenic ALR/Alpha|Satellite|centr 632056 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1290-7 chr8 122893448 122893863 + 6 NA intron (NM_001362797, intron 3 of 4) L1MA5|LINE|L1 112000 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 881-7 chr12 79755675 79755982 + 6 NA Intergenic L1MCc|LINE|L1 -64731 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 684-43 chr17 34216275 34216447 + 6 NA Intergenic L1PA5|LINE|L1 -32729 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 976-14 chr20 40297591 40297845 + 6 NA Intergenic L1ME3C|LINE|L1 293257 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 1650-2 chr20 58529044 58529548 + 6 NA intron (NR_034147, intron 5 of 6) L1ME1|LINE|L1 -13897 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 1279 chr1 154082366 154082863 + 6 NA intron (NM_001159484, intron 16 of 37) MER21B|LTR|ERVL 21978 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 1058-7 chr13 114092585 114092869 + 6 NA intron (NM_001320821, intron 1 of 25).2 L1M1|LINE|L1 -14772 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 1456 chr1 177698664 177699082 + 6 NA Intergenic L1MEf|LINE|L1 -1651 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 1069 chr10 75797715 75798011 + 6 NA intron (NM_032024, intron 1 of 5) L1MB7|LINE|L1 15102 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 986-24 chr4 30561389 30561695 + 6 NA Intergenic Intergenic -158827 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1072-5 chr14 44357333 44357791 + 6 NA Intergenic Intergenic 149721 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1122-9 chr18 70438502 70438853 + 6 NA Intergenic L1M5|LINE|L1 -54086 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 1818-2 chr2 167743998 167744415 + 6 NA Intergenic L1ME3F|LINE|L1 -74466 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 1136-6 chr19 27605586 27605992 + 6 NA Intergenic ALR/Alpha|Satellite|centr -187642 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 2205-2 chr19 37411190 37412286 + 6 NA 3' UTR (NM_001330482, exon 5 of 5) 3' UTR (NM_001330482, exon 5 of 5) 40639 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 2319 chr10 43484708 43485694 + 6 NA Intergenic Intergenic 48090 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 2648 chr5 74534436 74535129 + 6 NA intron (NR_126354, intron 1 of 2) L1MEi|LINE|L1 2194 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 1548 chr12 34472845 34473653 + 6 NA Intergenic ALR/Alpha|Satellite|centr 450753 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1145-14 chr9 137923722 137924064 + 6 NA intron (NM_001243812, intron 6 of 45) L1MD1|LINE|L1 23167 NR_132977 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 836-21 chr14 87291754 87291966 + 6 NA Intergenic LTR16D|LTR|ERVL 363434 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 1053-17 chr6 40041921 40042127 + 6 NA Intergenic Intergenic -107562 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1425-2 chr17 67557935 67558325 + 6 NA intron (NM_181671, intron 4 of 9) intron (NM_181671, intron 4 of 9) -86545 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 1886 chr10 21060390 21061092 + 6 NA intron (NM_001173484, intron 2 of 6) L2|LINE|L2 -113249 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 630-92 chr3 165708392 165708662 + 6 NA Intergenic MLT1I|LTR|ERVL-MaLR 128896 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 1466-6 chr4 79777899 79778388 + 6 NA Intergenic L1MA9|LINE|L1 -49328 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 1211-5 chr22 49605740 49606107 + 6 NA intron (NR_110523, intron 1 of 4) L1ME4a|LINE|L1 51596 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 1194-3 chr2 114379549 114379808 + 6 NA Intergenic ERVL-B4-int|LTR|ERVL -62963 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1046-18 chr6 45231486 45231847 + 6 NA intron (NM_001350325, intron 2 of 10) L1M2|LINE|L1 -33896 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 963-18 chr18 13316027 13316263 + 6 NA intron (NM_181482, intron 2 of 5) L1MEg|LINE|L1 38040 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 1639-2 chr14 68105172 68105702 + 6 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 281845 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 1287-6 chr5 16401700 16402139 + 6 NA intron (NR_104625, intron 7 of 8) Tigger1|DNA|TcMar-Tigger 39183 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 1037-14 chr7 42822177 42822423 + 6 NA Intergenic L1MA9|LINE|L1 89543 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 762-82 chrX 94559691 94559940 + 6 NA Intergenic HAL1|LINE|L1 503411 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 1101 chr1 244575619 244575966 + 6 NA intron (NM_001130957, intron 11 of 21) HERVIP10FH-int|LTR|ERV1 -77256 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 1652-4 chr8 126075461 126076471 + 6 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -124769 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1171-10 chr8 134195446 134195766 + 6 NA Intergenic MIRb|SINE|MIR 309110 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1207-8 chr5 110471847 110472261 + 6 NA intron (NM_001039763, intron 12 of 13) L1MA4|LINE|L1 41861 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 1332 chr1 227653143 227653567 + 6 NA intron (NM_001367909, intron 3 of 3) L1MA9|LINE|L1 44352 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 889-37 chr8 113666449 113666691 + 6 NA Intergenic L3|LINE|CR1 -229631 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 824-16 chr19 29345939 29346143 + 6 NA intron (NR_040029, intron 9 of 9) L1MB3|LINE|L1 -132890 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1281-2 chr10 29167155 29167567 + 6 NA Intergenic L1MEc|LINE|L1 -121709 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 4823 chr10 43520859 43522568 + 6 NA Intergenic Tigger17a|DNA|TcMar-Tigger 46746 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 2154 chr22 31005494 31006379 + 6 NA Intergenic L1MC3|LINE|L1 36725 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 1159-12 chr8 112017272 112017696 + 6 NA Intergenic L1PA16|LINE|L1 -626009 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 850-13 chr15 61553864 61554078 + 6 NA Intergenic L1ME1|LINE|L1 -175947 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 914-5 chr11 25112658 25112883 + 6 NA Intergenic L1MC4a|LINE|L1 615717 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 1533-3 chr14 28086941 28087277 + 6 NA Intergenic Intergenic -413888 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 902-6 chr12 14523872 14524121 + 6 NA intron (NM_024829, intron 6 of 10) L1MA6|LINE|L1 -43736 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 1066-7 chr14 56385587 56385911 + 6 NA Intergenic L1MA3|LINE|L1 -128582 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 1621-2 chr17 62903652 62904013 + 6 NA Intergenic Zaphod|DNA|hAT-Tip100 -40383 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 1171 chr10 31437002 31437334 + 6 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -37413 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 2302 chr12 133107281 133107924 + 6 NA TTS (NM_001300776) TTS (NM_001300776) 22871 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 1609-2 chr8 142052392 142052955 + 6 NA Intergenic L1MD1|LINE|L1 -123666 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 781-6 chr10 67478517 67478769 + 6 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -75233 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 1284-5 chr2 13261955 13262349 + 6 NA Intergenic Intergenic -255139 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 877-8 chr16 52790813 52791118 + 6 NA Intergenic THE1C|LTR|ERVL-MaLR -183990 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 1065-7 chr2 209928977 209929253 + 6 NA intron (NM_032504, intron 35 of 63) intron (NM_032504, intron 35 of 63) -73450 NM_006916 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 970-16 chr3 34816489 34816880 + 6 NA Intergenic L1MA9|LINE|L1 577339 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 1670 chr2 45876813 45877507 + 6 NA intron (NM_005400, intron 2 of 14) L1MEd|LINE|L1 225485 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 1271 chr1 152525496 152525950 + 6 NA Intergenic Intergenic 11241 NM_019060 54544 Hs.110196 NM_019060 ENSG00000169509 CRCT1 C1orf42|NICE-1|NICE1 cysteine rich C-terminal 1 protein-coding 1045-15 chr3 184091391 184091667 + 6 NA Intergenic L1MC4|LINE|L1 -5535 NM_198313 285242 Hs.449179 NM_182589 ENSG00000186038 HTR3E 5-HT3-E|5-HT3E|5-HT3c1 5-hydroxytryptamine receptor 3E protein-coding 1045-26 chr8 136879775 136880291 + 6 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 349235 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 963-22 chr3 5264261 5264523 + 6 NA Intergenic Intergenic -14137 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 734-34 chr2 48904530 48904822 + 6 NA Intergenic Intergenic -148952 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 1049-13 chr21 32208809 32209202 + 6 NA Intergenic Intergenic 70044 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 1419-4 chr8 46776618 46777213 + 6 NA Intergenic Intergenic -63971 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 1270-4 chr5 42290994 42291500 + 6 NA Intergenic Intergenic -115902 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 924-38 chr7 56463965 56464196 + 6 NA Intergenic L1MB2|LINE|L1 -15705 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 799-49 chr7 14655790 14655957 + 6 NA intron (NM_001350722, intron 13 of 25) L1MA5|LINE|L1 185577 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 1647 chr12 3405330 3406087 + 6 NA intron (NM_001256536, intron 1 of 9) THE1C-int|LTR|ERVL-MaLR 24359 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 1507-4 chr8 144975805 144976233 + 6 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -18846 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 916-23 chr4 98192699 98192972 + 6 NA Intergenic L1MEg|LINE|L1 -49359 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 1450-3 chr3 190471826 190472364 + 6 NA Intergenic L1MA4|LINE|L1 -22219 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 513-28 chr10 57991354 57991489 + 6 NA Intergenic Intergenic 276473 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 1281-5 chr2 161564443 161564914 + 6 NA Intergenic L1PA11|LINE|L1 -56776 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 1384 chr10 125943993 125944362 + 6 NA intron (NM_001363549, intron 1 of 10) Arthur1|DNA|hAT-Tip100 29096 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 1754 chr1 179718519 179719325 + 6 NA Intergenic L1PA17|LINE|L1 -8854 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 864-38 chr6 33501660 33501910 + 6 NA Intergenic Intergenic 47209 NM_152735 221504 Hs.591805 NM_152735 ENSG00000213588 ZBTB9 ZNF919 zinc finger and BTB domain containing 9 protein-coding 1179-2 chr22 49697542 49697834 + 6 NA Intergenic Intergenic -40169 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 988-38 chr8 82964813 82965184 + 6 NA Intergenic Intergenic 52894 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 1048-14 chr2 67583192 67583438 + 6 NA Intergenic L1PA15-16|LINE|L1 185982 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 1133-2 chr11 82493404 82493639 + 6 NA Intergenic MER57B1|LTR|ERV1 -89608 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 1938 chr17 54242773 54243681 + 6 NA Intergenic HAL1ME|LINE|L1 420300 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 1456-3 chr19 56425980 56426436 + 6 NA 3' UTR (NM_001159861, exon 5 of 5) 3' UTR (NM_001159861, exon 5 of 5) 21876 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 1096-7 chr14 66739660 66739959 + 6 NA intron (NM_001024218, intron 2 of 21) L1MEd|LINE|L1 232402 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 1096-2 chr1 55664261 55664729 + 6 NA Intergenic Intergenic 280468 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 917-6 chr13 20691298 20691507 + 6 NA TTS (NM_001353568) TTS (NM_001353568) -11941 NM_138284 53342 Hs.655142 NM_138284 ENSG00000172458 IL17D IL-17D interleukin 17D protein-coding 1499 chr18 1495609 1496322 + 6 NA Intergenic L1PA17|LINE|L1 -136336 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 2761 chr19 36340211 36341227 + 6 NA exon (NM_020917, exon 5 of 5) exon (NM_020917, exon 5 of 5) -9001 NR_038278 100506930 Hs.595153 NR_038278 ENSG00000232677 LINC00665 - long intergenic non-protein coding RNA 665 ncRNA 1409-2 chr16 86166038 86166569 + 6 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -29878 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 1445 chr16 87530244 87530765 + 6 NA Intergenic L1M5|LINE|L1 36317 NR_110943 101928737 Hs.579009 NR_110943 ENSG00000260750 LOC101928737 - uncharacterized LOC101928737 ncRNA 1249-7 chr5 59417707 59418221 + 6 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -60994 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1035-11 chr3 87926149 87926457 + 6 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -56273 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 1748-3 chr8 88661695 88662267 + 6 NA Intergenic L1MEf|LINE|L1 -334498 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 900-25 chr20 60647329 60647669 + 6 NA Intergenic Intergenic 82937 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 1220-4 chr21 44621890 44622237 + 6 NA intron (NM_144991, intron 1 of 11) L1MD|LINE|L1 -5030 NM_198690 386676 Hs.474000 NM_198690 ENSG00000221837 KRTAP10-9 KAP10.9|KAP18.9|KRTAP18-9 keratin associated protein 10-9 protein-coding 2205 chr15 60050136 60051316 + 6 NA Intergenic MLT1A1|LTR|ERVL-MaLR 46415 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 1654 chr6 106864678 106865355 + 6 NA Intergenic MIR|SINE|MIR -77475 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 853-39 chr7 41069381 41069618 + 6 NA Intergenic Intergenic -32105 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 2141 chr8 123875409 123876181 + 6 NA intron (NM_001039112, intron 1 of 40) L2a|LINE|L2 23808 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 3332 chr8 144976483 144977366 + 6 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -17941 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 1138-2 chr10 21233430 21233811 + 6 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 59318 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 960-27 chr3 74051542 74051746 + 6 NA Intergenic L1ME4b|LINE|L1 242400 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 1164-16 chr9 83150428 83150759 + 6 NA Intergenic MER97a|DNA|hAT-Tip100 -87451 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 1409-3 chr19 37625903 37626561 + 6 NA Intergenic L1MDa|LINE|L1 29233 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 1116-14 chr7 57476080 57476547 + 6 NA Intergenic Intergenic 26136 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 880-42 chr6 152713937 152714221 + 6 NA intron (NM_025107, intron 1 of 1) intron (NM_025107, intron 1 of 1) 16184 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 1136-8 chr4 69536297 69536653 + 6 NA Intergenic Intergenic -10461 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 879-7 chr14 67034288 67034547 + 6 NA intron (NM_001024218, intron 9 of 21) L1MB2|LINE|L1 -155023 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 990-25 chr9 28974615 28974944 + 6 NA intron (NM_001354574, intron 1 of 5) MIRb|SINE|MIR -85824 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 1014-18 chr3 44715115 44715400 + 6 NA intron (NM_033210, intron 2 of 3) L1ME4a|LINE|L1 2597 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 953-28 chr7 26556880 26557236 + 6 NA Intergenic Intergenic -18233 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 710-35 chr17 70838347 70838539 + 6 NA Intergenic Intergenic 363736 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1136-7 chr3 6047174 6047501 + 6 NA Intergenic L1MA8|LINE|L1 758112 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 868-39 chr7 80171797 80172126 + 6 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 36177 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 2000 chr4 77333764 77334563 + 6 NA Intergenic HERVIP10B3-int|LTR|ERV1 176956 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 1477-5 chr22 27229863 27230368 + 6 NA Intergenic L2a|LINE|L2 -5436 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 695-69 chr4 42972435 42972599 + 6 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 79251 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 1033-10 chr6 119269738 119270149 + 6 NA intron (NM_005907, intron 5 of 12) FLAM_A|SINE|Alu 79818 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 1415-6 chr3 94752142 94752523 + 6 NA Intergenic Intergenic -185931 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 878-43 chr7 32113388 32113629 + 6 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -42072 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 898-19 chr19 9557155 9557408 + 6 NA Intergenic LOR1-int|LTR|ERV1 18615 NR_134921 101928238 Hs.324978 NR_134920 ENSG00000278611 ZNF426-DT - ZNF426 divergent transcript ncRNA 1323-2 chr14 54093859 54094391 + 6 NA Intergenic L1MB8|LINE|L1 -137234 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 1204-11 chrY 56833192 56833658 + 6 NA Intergenic AluYj4|SINE|Alu -120830 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 2493 chr3 123841612 123842775 + 6 NA intron (NM_001321309, intron 2 of 32) L1MEi|LINE|L1 42139 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 1580-2 chr8 47989419 47989822 + 6 NA Intergenic HERVFH21-int|LTR|ERV1 -18811 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 882-10 chr11 83623123 83623365 + 6 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 59181 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 5869 chr19 27610595 27612668 + 6 NA Intergenic ALR/Alpha|Satellite|centr -181800 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1271-5 chr17 70028025 70028498 + 6 NA Intergenic L1PREC2|LINE|L1 -23010 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 1855 chr8 99461242 99461929 + 6 NA intron (NM_017890, intron 23 of 61) intron (NM_017890, intron 23 of 61) 75145 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 1017-12 chr2 202080928 202081243 + 6 NA intron (NM_001277372, intron 2 of 23) L1MB3|LINE|L1 7830 NM_001367720 100652824 Hs.686898 NM_001080445 ENSG00000182329 KIAA2012 - KIAA2012 protein-coding 880-37 chr6 6507048 6507304 + 6 NA intron (NR_026970, intron 3 of 7) L1ME4b|LINE|L1 -81544 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 1727 chr10 7327874 7328824 + 6 NA intron (NM_001029880, intron 4 of 20) L1ME1|LINE|L1 80992 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 1036-2 chr1 90815880 90816104 + 6 NA intron (NR_135038, intron 1 of 2) intron (NR_135038, intron 1 of 2) 20169 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 1369 chr16 71448759 71449261 + 6 NA exon (NM_001304494, exon 3 of 3) exon (NM_001304494, exon 3 of 3) -6956 NM_001367365 1040-9 chr17 70983195 70983424 + 6 NA Intergenic THE1B|LTR|ERVL-MaLR 218870 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1186-17 chr6 94786423 94786783 + 6 NA Intergenic Intergenic 790848 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 1572-3 chr5 46044263 46044772 + 6 NA Intergenic ALR/Alpha|Satellite|centr -348137 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 746-88 chr8 135729586 135729760 + 6 NA Intergenic LTR16E1|LTR|ERVL 272217 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 619-127 chr8 59219208 59219374 + 6 NA Intergenic Intergenic 100081 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 1026-23 chr6 167115664 167115874 + 6 NA intron (NM_004367, intron 1 of 2) intron (NM_004367, intron 1 of 2) 3962 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 1812 chr2 81927484 81928003 + 6 NA Intergenic Intergenic -460797 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1416-2 chr2 30669896 30670355 + 6 NA Intergenic L1MCc|LINE|L1 137321 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 783-14 chr10 76652966 76653357 + 6 NA Intergenic L1MB5|LINE|L1 -234883 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 1723 chr2 65488048 65488701 + 6 NA Intergenic Intergenic -55775 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 2144 chr12 1063524 1064389 + 6 NA intron (NR_027949, intron 2 of 15) L1M2|LINE|L1 36208 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 2015 chr8 87737959 87738644 + 6 NA Intergenic Intergenic 135714 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 1345-6 chr3 100237730 100238319 + 6 NA Intergenic MLT2A2|LTR|ERVL -22968 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 993-26 chr9 101414760 101415049 + 6 NA Intergenic Intergenic 16050 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 1342-4 chr2 109443971 109444656 + 6 NA intron (NM_001099289, intron 7 of 9) intron (NM_001099289, intron 7 of 9) -130688 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 1664-2 chr2 128332945 128333482 + 6 NA Intergenic L1ME2|LINE|L1 -14345 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 1510 chr11 31087422 31088218 + 6 NA intron (NM_001367979, intron 17 of 38) L1ME1|LINE|L1 -95134 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 1242-10 chr4 60810129 60810527 + 6 NA Intergenic MLT1A0|LTR|ERVL-MaLR -112291 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 941-19 chr3 108987025 108987301 + 6 NA intron (NM_014429, intron 21 of 27) intron (NM_014429, intron 21 of 27) -33284 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 819-38 chrUn_KI270757v1 65746 66000 + 6 NA NA ALR/Alpha|Satellite|centr NA NA 1056-18 chr7 35428364 35428552 + 6 NA Intergenic MER3|DNA|hAT-Charlie 114603 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 1053-15 chr3 42912194 42912534 + 6 NA intron (NM_001134656, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat 6222 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 1007-9 chr4 39437502 39437882 + 6 NA intron (NM_175737, intron 2 of 4) intron (NM_175737, intron 2 of 4) 21256 NM_000661 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 1066-6 chr14 43823820 43824180 + 6 NA Intergenic Intergenic 683283 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1647-5 chr8 87746494 87746933 + 6 NA Intergenic L1MEf|LINE|L1 127302 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 1550-4 chr3 139851683 139852258 + 6 NA Intergenic L1PA16|LINE|L1 -83215 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 1348-8 chr5 63761750 63762120 + 6 NA Intergenic Intergenic 200357 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 806 chr1 14573895 14574042 + 6 NA Intergenic Intergenic -24717 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 962-19 chr5 110299810 110300029 + 6 NA Intergenic L2b|LINE|L2 213996 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 3081 chr19 37413262 37414188 + 6 NA exon (NM_001330482, exon 5 of 5) exon (NM_001330482, exon 5 of 5) 42626 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 693-30 chr14 52522819 52523051 + 6 NA intron (NM_020784, intron 6 of 20) MIRc|SINE|MIR 29570 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 1315-4 chr6 66582387 66582773 + 6 NA Intergenic Intergenic 794701 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 1127-5 chr5 42297017 42297606 + 6 NA Intergenic L1M5|LINE|L1 -121966 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 1355 chr12 2070137 2070601 + 6 NA intron (NM_199460, intron 1 of 49).2 intron (NM_199460, intron 1 of 49).2 17084 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 1252-7 chr5 76124483 76124925 + 6 NA intron (NM_014979, intron 1 of 12) L1MB3|LINE|L1 41321 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 1794 chr13 92762105 92762886 + 6 NA intron (NM_004466, intron 7 of 7) L1M2a|LINE|L1 -40881 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 994-17 chr9 96817201 96817529 + 6 NA 3' UTR (NM_001346991, exon 5 of 5) 3' UTR (NM_001346991, exon 5 of 5) 37149 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 1559-4 chr5 46235872 46236483 + 6 NA Intergenic ALR/Alpha|Satellite|centr -539797 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1312-2 chr12 34489600 34490093 + 6 NA Intergenic ALR/Alpha|Satellite|centr 467350 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 678-66 chr3 25128914 25129151 + 6 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) -211770 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 1346-4 chr3 38435538 38435936 + 6 NA Intergenic L1MA4A|LINE|L1 -18153 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 2603 chr5 178714509 178715579 + 6 NA intron (NM_005649, intron 4 of 4) intron (NM_005649, intron 4 of 4) 15615 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 2944 chr4 49118089 49119443 + 6 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 132124 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1549 chr7 3237268 3237979 + 6 NA Intergenic Intergenic -63629 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 977 chr13 21944491 21944768 + 6 NA Intergenic THE1D-int|LTR|ERVL-MaLR -66469 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 952-22 chr6 39993463 39993817 + 6 NA Intergenic Intergenic -59178 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1687 chr2 176081335 176081870 + 6 NA intron (NM_001080458, intron 2 of 2) CpG 2360 NM_001080458 344191 Hs.452341 NM_001080458 ENSG00000174279 EVX2 EVX-2 even-skipped homeobox 2 protein-coding 1409-4 chr21 27643795 27644255 + 6 NA Intergenic THE1D|LTR|ERVL-MaLR -78354 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 892-26 chr21 42901641 42901828 + 6 NA intron (NM_001001503, intron 2 of 2) MIR|SINE|MIR 8425 NM_001001503 4731 Hs.473937 NM_021075 ENSG00000160194 NDUFV3 CI-10k|CI-9KD NADH:ubiquinone oxidoreductase subunit V3 protein-coding 1170-6 chr6 162902990 162903410 + 6 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 150961 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 1122-11 chr3 27870640 27871071 + 6 NA Intergenic L2b|LINE|L2 -36719 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 1092-15 chr7 13203269 13203613 + 6 NA Intergenic AluSz6|SINE|Alu 515808 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 1689-2 chr2 122542761 122543296 + 6 NA Intergenic Intergenic 530453 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 728-60 chr3 34488453 34488587 + 6 NA Intergenic L1PA17|LINE|L1 689890 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 2188 chr5 150890107 150891045 + 6 NA intron (NM_001346557, intron 3 of 3) L1MEc|LINE|L1 14407 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 758-70 chr7 46064593 46064785 + 6 NA Intergenic Intergenic -143417 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 2158 chr1 113527947 113529009 + 6 NA intron (NM_001142782, intron 1 of 20) L1MC5a|LINE|L1 137963 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 4380 chr19 27571115 27572677 + 6 NA Intergenic ALR/Alpha|Satellite|centr -221535 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 806-47 chr5 26610457 26610711 + 6 NA Intergenic Intergenic 428002 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1372-3 chr19 57702308 57702830 + 6 NA exon (NM_001085384, exon 3 of 3) exon (NM_001085384, exon 3 of 3) 6635 NR_110974 7710 Hs.646378 NM_003444 ENSG00000179909 ZNF154 pHZ-92 zinc finger protein 154 protein-coding 2117 chr19 37564310 37565125 + 6 NA exon (NM_016536, exon 4 of 4) exon (NM_016536, exon 4 of 4) 13343 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 1461-3 chr7 4657781 4658266 + 6 NA Intergenic L1ME3B|LINE|L1 -24272 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 935-34 chr5 116245673 116245968 + 6 NA intron (NM_001308080, intron 5 of 6) L1PA13|LINE|L1 -9923 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 2474 chr14 71257732 71258816 + 6 NA Intergenic MER5A1|DNA|hAT-Charlie -62202 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 2239 chr2 72762646 72763356 + 6 NA intron (NR_135774, intron 1 of 19) L1MEc|LINE|L1 63032 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 1816 chr10 43539893 43540592 + 6 NA Intergenic MLT1A|LTR|ERVL-MaLR 28217 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 1619 chr10 101188807 101189344 + 6 NA intron (NR_120620, intron 3 of 5) MER74B|LTR|ERVL 12753 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 811-17 chr14 88169202 88169465 + 6 NA Intergenic L1PB4|LINE|L1 101578 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 1014-8 chr15 98467885 98468123 + 6 NA intron (NM_182562, intron 4 of 6) intron (NM_182562, intron 4 of 6) 46332 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 882-40 chr7 46094309 46094600 + 6 NA Intergenic L1M4|LINE|L1 -173182 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 1508 chr14 53840369 53840807 + 6 NA Intergenic Intergenic 107896 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 1205-7 chr4 66339861 66340344 + 6 NA Intergenic Intergenic 63278 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 1252-4 chr20 58527368 58527766 + 6 NA intron (NR_034147, intron 5 of 6) L1ME1|LINE|L1 -12168 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 1269 chr1 219004307 219004710 + 6 NA intron (NR_031644, intron 6 of 6) L1MEc|LINE|L1 -85997 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 1235-3 chr16 68569743 68570084 + 6 NA intron (NM_001305204, intron 4 of 4) L2|LINE|L2 30622 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 1366-3 chr7 26008456 26008784 + 6 NA Intergenic MIR|SINE|MIR -58634 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 1017-9 chr17 71077236 71077537 + 6 NA Intergenic MLT1K|LTR|ERVL-MaLR 124793 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 2701 chr14 72767788 72768676 + 6 NA intron (NM_001280544, intron 2 of 9) L1MDa|LINE|L1 124417 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 813-52 chr8 129455092 129455310 + 6 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 28941 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 859-3 chr1 215496236 215496556 + 6 NA Intergenic Intergenic -70908 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 1000-10 chr2 65468950 65469250 + 6 NA Intergenic Intergenic -36501 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 1779 chr4 64228653 64229278 + 6 NA Intergenic MER52-int|LTR|ERV1 180485 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 2189 chr19 56521995 56522724 + 6 NA intron (NM_001321768, intron 3 of 3) intron (NM_001321768, intron 3 of 3) 14504 NM_001321768 57573 Hs.230188 NM_020813 ENSG00000196263 ZNF471 ERP1|Z1971 zinc finger protein 471 protein-coding 1057-14 chr6 52033369 52033832 + 6 NA intron (NM_138694, intron 28 of 66) intron (NM_138694, intron 28 of 66) 54013 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 1197-5 chr22 32791853 32792341 + 6 NA intron (NM_003490, intron 6 of 13) MIRb|SINE|MIR -8719 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 1092-19 chr9 78847394 78847846 + 6 NA Intergenic Intergenic 298046 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 1044-16 chr4 32290149 32290408 + 6 NA Intergenic LOR1b|LTR|ERV1 -60760 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 894-12 chr14 84686357 84686702 + 6 NA Intergenic L1MA7|LINE|L1 -585403 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 1047-11 chr17 54665585 54665923 + 6 NA Intergenic Intergenic -234937 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 547-240 chr8 69415604 69415877 + 6 NA Intergenic LTR62|LTR|ERVL 32504 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 811-3 chr10 16713577 16713825 + 6 NA intron (NM_152724, intron 6 of 7) L1MA6|LINE|L1 103723 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 1238 chr1 102449864 102450268 + 6 NA Intergenic L1MA7|LINE|L1 -452832 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 943-12 chr19 6291434 6291653 + 6 NA Intergenic AluSz6|SINE|Alu -11568 NM_005934 4298 Hs.10095 NM_005934 ENSG00000130382 MLLT1 ENL|LTG19|YEATS1 MLLT1 super elongation complex subunit protein-coding 1167-20 chrX 155583647 155584087 + 6 NA intron (NM_018196, intron 1 of 7) L1PB4|LINE|L1 -28698 NM_001304990 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 1119-9 chr6 45175416 45175707 + 6 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 22209 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 1604-2 chr3 122053327 122053652 + 6 NA Intergenic Intergenic -1873 NM_175862 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 927-5 chr14 41791093 41791411 + 6 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 184396 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1155-4 chr5 39839923 39840393 + 6 NA Intergenic L1M7|LINE|L1 -212133 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 835-32 chr2 132467285 132467519 + 6 NA intron (NM_001508, intron 1 of 1) L1PA16|LINE|L1 33691 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 2976 chr2 126541774 126542752 + 6 NA Intergenic L1MCa|LINE|L1 -113672 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 773-14 chr16 61454626 61454848 + 6 NA Intergenic Intergenic -398971 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 1366 chr4 100442387 100442776 + 6 NA intron (NM_001159694, intron 4 of 10) L1MA9|LINE|L1 -47334 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 3130 chr2 98247312 98248836 + 6 NA intron (NM_001345864, intron 13 of 21) L1MEi|LINE|L1 -98081 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 1889-2 chr3 184798642 184799090 + 6 NA Intergenic HAL1|LINE|L1 -13277 NM_015303 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 2589-2 chr8 98974894 98975992 + 6 NA Intergenic Intergenic 31001 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 1717 chr14 53504310 53504849 + 6 NA Intergenic Intergenic 351225 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 1094-8 chr4 92901345 92901687 + 6 NA intron (NM_001286838, intron 2 of 14) L1P4|LINE|L1 597117 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 886-23 chr21 30930052 30930313 + 6 NA Intergenic HSMAR2|DNA|TcMar-Mariner -48602 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 1116-5 chr2 66151434 66151861 + 6 NA Intergenic L1MA4A|LINE|L1 206681 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 1178-9 chr6 156603935 156604335 + 6 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -173720 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 848-44 chr8 31644491 31644760 + 6 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 4873 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 921-27 chr8 139635793 139636077 + 6 NA intron (NR_104210, intron 1 of 3) L1ME4a|LINE|L1 67188 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 880-4 chr11 28749648 28749899 + 6 NA Intergenic L1ME4b|LINE|L1 -272225 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 1026-11 chr18 53129719 53130229 + 6 NA intron (NM_005215, intron 7 of 28) L1ME2|LINE|L1 -107127 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 1146-9 chr3 7704211 7704564 + 6 NA intron (NM_181874, intron 10 of 10) Charlie17b|DNA|hAT-Charlie -169103 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 786-12 chr11 5965030 5965234 + 6 NA Intergenic Intergenic 3362 NM_001146033 390084 Hs.719888 NM_001146033 ENSG00000188691 OR56A5 OR56A5P olfactory receptor family 56 subfamily A member 5 protein-coding 808-6 chr10 73305898 73306188 + 6 NA intron (NM_001367801, intron 13 of 27) L1M4|LINE|L1 52711 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 644-56 chr3 4404224 4404419 + 6 NA intron (NM_001164674, intron 6 of 7) intron (NM_001164674, intron 6 of 7) 62948 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 1122-12 chr6 136873850 136874122 + 6 NA intron (NM_000288, intron 8 of 9) L1MC4|LINE|L1 -48315 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 1031-13 chr5 3168782 3169076 + 6 NA Intergenic Charlie2b|DNA|hAT-Charlie -8906 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 1143 chr1 229736022 229736319 + 6 NA Intergenic L1M4|LINE|L1 109923 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 1407-2 chr2 114173753 114174229 + 6 NA Intergenic MIR|SINE|MIR -194007 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 1152-2 chr14 20120235 20120583 + 6 NA Intergenic Intergenic 2941 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 1032-5 chr12 7685737 7686042 + 6 NA Intergenic Intergenic 9886 NM_020634 9573 Hs.86232 NM_020634 ENSG00000184344 GDF3 KFS3|MCOP7|MCOPCB6 growth differentiation factor 3 protein-coding 792-63 chr8 131502425 131502754 + 6 NA Intergenic L1ME3F|LINE|L1 -401504 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 1614-2 chr12 34665579 34666323 + 6 NA Intergenic ALR/Alpha|Satellite|centr 643455 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1693 chr1 174322570 174323030 + 6 NA intron (NM_001366445, intron 11 of 13) intron (NM_001366445, intron 11 of 13) 47700 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 1279-6 chr4 97813895 97814281 + 6 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 329388 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 955-21 chr8 48961524 48961801 + 6 NA Intergenic MIR|SINE|MIR -40233 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 4753 chr12 133119675 133121534 + 6 NA exon (NM_001277291, exon 2 of 2) exon (NM_001277291, exon 2 of 2) 9869 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 1730-4 chr5 159303931 159304608 + 6 NA Intergenic MER34C2|LTR|ERV1 26204 NM_002187 3593 Hs.674 NM_002187 ENSG00000113302 IL12B CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2 interleukin 12B protein-coding 849-12 chr14 62146612 62146833 + 6 NA Intergenic L1M6|LINE|L1 -6749 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 998-19 chr8 88693196 88693621 + 6 NA Intergenic L1M3f|LINE|L1 -365925 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 2551 chr4 375630 376490 + 6 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 25903 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 1524-3 chr4 30411598 30412131 + 6 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -308505 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 2612 chr9 81427832 81428737 + 6 NA Intergenic L1MEg|LINE|L1 261251 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 1652-3 chr7 69270972 69271554 + 6 NA Intergenic L1MCa|LINE|L1 326361 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 1564-2 chr4 38998570 38999040 + 6 NA exon (NM_024943, exon 2 of 7) exon (NM_024943, exon 2 of 7) 33604 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 1373 chr1 64292823 64293566 + 6 NA Intergenic Intergenic 89571 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 1544 chr11 50449509 50450001 + 6 NA Intergenic ALR/Alpha|Satellite|centr 40608 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1045-14 chr3 118029300 118029591 + 6 NA Intergenic L1MA1|LINE|L1 -338520 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 1030-9 chr12 24542976 24543182 + 6 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 19412 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 752-42 chr2 172536274 172536570 + 6 NA Intergenic MER41-int|LTR|ERV1 -18951 NR_103731 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 1098 chr1 92401520 92401972 + 6 NA 3' UTR (NM_024813, exon 13 of 13) 3' UTR (NM_024813, exon 13 of 13) 82208 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 788-32 chr21 25093780 25093927 + 6 NA Intergenic L1MEf|LINE|L1 253303 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 971-9 chr16 24379319 24379639 + 6 NA Intergenic MIRb|SINE|MIR 123926 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 820-28 chr2 79267619 79267926 + 6 NA Intergenic HERV16-int|LTR|ERVL -108019 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 1277 chr10 76741475 76742164 + 6 NA Intergenic Intergenic -146225 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 1840-2 chr8 144981763 144982384 + 6 NA intron (NR_023392, intron 4 of 4) L1M4b|LINE|L1 -12792 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 1492-5 chr3 38437217 38437821 + 6 NA Intergenic L1MA4A|LINE|L1 -16371 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 1039-14 chr22 34756675 34756983 + 6 NA non-coding (NR_138042, exon 5 of 5) non-coding (NR_138042, exon 5 of 5) 241087 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 4309-2 chr4 59478562 59480442 + 6 NA Intergenic L1MB1|LINE|L1 465929 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1655-4 chr2 206925668 206926008 + 6 NA Intergenic Intergenic -13680 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 1584-2 chr4 49153572 49154258 + 6 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 167273 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 739-43 chr2 226178013 226178211 + 6 NA intron (NR_046102, intron 5 of 6) intron (NR_046102, intron 5 of 6) 35318 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 1333-2 chr21 27552884 27553209 + 6 NA Intergenic THE1B-int|LTR|ERVL-MaLR -169333 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 2449 chr4 30408548 30409551 + 6 NA Intergenic L1M2|LINE|L1 -311320 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1163-16 chrUn_KI270465v1 1428 1771 + 6 NA NA ALR/Alpha|Satellite|centr NA NA 1658 chr10 131796876 131797541 + 6 NA Intergenic L1MC1|LINE|L1 -7009 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 1205-4 chr14 80114132 80114480 + 6 NA Intergenic Charlie13a|DNA|hAT-Charlie -97113 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 1966 chr2 95216127 95217081 + 6 NA Intergenic Intergenic 50795 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 1533-4 chr17 33733211 33733742 + 6 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -199716 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 1244-5 chr2 179458289 179458785 + 6 NA intron (NR_148054, intron 5 of 8) intron (NR_148054, intron 5 of 8) 104051 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 1370-4 chr17 69621838 69622320 + 6 NA intron (NR_109972, intron 2 of 4) L1MA4A|LINE|L1 28092 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 1401-2 chr14 83684210 83684886 + 6 NA Intergenic L1MB3|LINE|L1 1041916 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 871-29 chr5 67763925 67764231 + 6 NA Intergenic Intergenic -29135 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 1248-4 chr18 13958044 13958332 + 6 NA Intergenic L1PA14|LINE|L1 -42481 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 1056 chr10 58537107 58537467 + 6 NA intron (NM_001080512, intron 1 of 20) L1PB4|LINE|L1 24415 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 1576-5 chr19 37125280 37125930 + 6 NA intron (NM_001329519, intron 4 of 4) intron (NM_001329519, intron 4 of 4) 46831 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 826-55 chr6 39275583 39275884 + 6 NA Intergenic Intergenic 38686 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 1522 chr2 33745730 33746541 + 6 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -17918 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 4685 chr14 54094520 54096309 + 6 NA Intergenic L1MB8|LINE|L1 -138523 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 1158-11 chr7 41740741 41741037 + 6 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -37799 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 900-30 chr4 38298219 38298463 + 6 NA Intergenic L1M1|LINE|L1 -68573 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 1588 chr1 87913238 87913797 + 6 NA Intergenic L1MB7|LINE|L1 -541862 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 625-76 chr4 90017660 90017843 + 6 NA Intergenic L1MCa|LINE|L1 -109782 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1068-4 chr12 129677856 129678139 + 6 NA intron (NM_133448, intron 2 of 8) L1ME3D|LINE|L1 226028 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 1215-7 chr22 19315547 19315903 + 6 NA Intergenic L1MD1|LINE|L1 -24006 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 950-16 chr2 225143997 225144290 + 6 NA Intergenic L1M1|LINE|L1 -101675 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 1597 chr12 34421775 34422166 + 6 NA Intergenic ALR/Alpha|Satellite|centr 399474 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 920-22 chr5 158508440 158508692 + 6 NA Intergenic Intergenic -98793 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 526-144 chr2 180354574 180354700 + 6 NA Intergenic L1PBb|LINE|L1 -337467 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 959-36 chr8 138366644 138366844 + 6 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 130517 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1154-3 chr14 55311093 55311439 + 6 NA intron (NM_152231, intron 1 of 1) THE1D|LTR|ERVL-MaLR 39112 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 1064-4 chr14 45675633 45676013 + 6 NA Intergenic L1MA4|LINE|L1 39779 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 1156-5 chr2 199744737 199745067 + 6 NA Intergenic Intergenic 106271 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 1058-5 chr11 132568203 132568463 + 6 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 284031 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 1078-15 chr7 32488414 32488705 + 6 NA intron (NR_024466, intron 3 of 4) intron (NR_024466, intron 3 of 4) 1821 NM_012322 23658 Hs.424908 NM_012322 ENSG00000106355 LSM5 YER146W LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 816-45 chr7 13605484 13605729 + 6 NA Intergenic Intergenic 380908 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 1205-3 chr14 60849293 60849714 + 6 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 114742 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 1262-5 chr15 60049457 60050092 + 6 NA Intergenic HAL1|LINE|L1 45463 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 1290-2 chr14 66958674 66959035 + 6 NA intron (NM_020806, intron 8 of 22) L1MB5|LINE|L1 -230586 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 688-21 chr11 43974914 43975105 + 6 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 32372 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 951-17 chr2 95236264 95236506 + 6 NA Intergenic MER31-int|LTR|ERV1 -38064 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 943-14 chr2 72762296 72762538 + 6 NA intron (NR_135774, intron 1 of 19) L1MEc|LINE|L1 63616 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 1674 chr1 215813757 215814327 + 6 NA intron (NM_206933, intron 48 of 71) intron (NM_206933, intron 48 of 71) 246738 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 856-37 chr5 10105421 10105620 + 6 NA Intergenic Intergenic 144368 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 1134-8 chr16 22780352 22780647 + 6 NA Intergenic Charlie9|DNA|hAT-Charlie -33663 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 753-48 chr5 12217385 12217573 + 6 NA Intergenic L1MA7|LINE|L1 -313033 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 1444-5 chr2 176182637 176183252 + 6 NA intron (NR_110465, intron 1 of 3) intron (NR_110465, intron 1 of 3) 4778 NR_110457 102800310 Hs.599655 NR_110457 HAGLROS - HAGLR opposite strand lncRNA ncRNA 943-28 chr9 106585718 106586064 + 6 NA Intergenic Intergenic -15037 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 1108-11 chr2 116296882 116297176 + 6 NA Intergenic L1MA4|LINE|L1 953214 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1308-2 chr5 42118908 42119226 + 6 NA Intergenic Intergenic 56278 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 1079-6 chr21 20505702 20506021 + 6 NA Intergenic AluJr|SINE|Alu -247176 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 1202-7 chr5 31774797 31775235 + 6 NA intron (NM_178140, intron 1 of 24) MER63A|DNA|hAT-Blackjack 135885 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 728-3 chr1 86322447 86322716 + 6 NA Intergenic Intergenic 35106 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 1023-14 chr2 170917969 170918319 + 6 NA Intergenic LTR28C|LTR|ERV1 -10333 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 554-43 chr11 28937533 28937666 + 6 NA Intergenic Intergenic -460051 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 1271-2 chr10 43617768 43618216 + 6 NA TTS (NM_001318140) TTS (NM_001318140) -10825 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 640-38 chr14_GL000225v1_random 21642 21894 + 6 NA NA BSR/Beta|Satellite|Satellite NA NA 1866 chr15 24590613 24591186 + 6 NA Intergenic HERV35I-int|LTR|ERV1 32742 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 956-6 chr11 29791706 29791930 + 6 NA Intergenic Charlie1a|DNA|hAT-Charlie 173016 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 851-47 chr8 137388606 137389001 + 6 NA Intergenic L2a|LINE|L2 24785 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1539 chr22 34739773 34740149 + 6 NA Intergenic Intergenic 257955 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1932 chr12 80392115 80392771 + 6 NA Intergenic (ATATA)n|Simple_repeat|Simple_repeat -51792 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 1000-15 chr3 23270785 23271085 + 6 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 67608 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 1926-2 chr19 52117194 52117660 + 6 NA intron (NM_178523, intron 3 of 3) intron (NM_178523, intron 3 of 3) -21662 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 525-147 chr21 29695221 29695342 + 6 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -52894 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 1662-2 chr5 3705178 3705702 + 6 NA Intergenic L1MEh|LINE|L1 109608 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 1242-8 chr22 28528060 28528544 + 6 NA intron (NM_001145418, intron 2 of 22) L1MEf|LINE|L1 68433 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 1243-8 chr3 133722983 133723379 + 6 NA intron (NM_001354703, intron 7 of 22) L1M2|LINE|L1 -23212 NM_001354704 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 2196-2 chr7 5095341 5095946 + 6 NA Intergenic AluY|SINE|Alu 23583 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 795-36 chr3 109580145 109580291 + 6 NA Intergenic Intergenic -22610 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 1023-19 chr4 95672415 95672901 + 6 NA Intergenic Intergenic -123685 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 2328-2 chrUn_GL000216v2 158859 160012 + 6 NA NA BSR/Beta|Satellite|Satellite NA NA 2959 chr8 101569867 101570914 + 6 NA exon (NM_001330593, exon 5 of 16) exon (NM_001330593, exon 5 of 16) 77951 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 1076-9 chr18 1833410 1833777 + 6 NA Intergenic L1MCa|LINE|L1 -473964 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 630-64 chr2 173631417 173631577 + 6 NA Intergenic Intergenic 276625 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 1033-5 chr2 60230491 60230735 + 6 NA Intergenic Intergenic 152423 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 1462-3 chr9 78522071 78522742 + 6 NA Intergenic L1MB7|LINE|L1 225281 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 1972 chr7 46472001 46472791 + 6 NA Intergenic Intergenic 224726 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 1546-3 chr7 4421587 4422119 + 6 NA Intergenic L1MD2|LINE|L1 -260442 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 919-15 chr3 89174254 89174514 + 6 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 66763 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 695-107 chr8 136223567 136223709 + 6 NA Intergenic L1MCc|LINE|L1 -307160 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1728-2 chr2 6841650 6842204 + 6 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -1463 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 881-18 chr18 70943958 70944116 + 6 NA Intergenic L1M1|LINE|L1 -293083 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 860-6 chr11 40652327 40652606 + 6 NA intron (NM_020929, intron 1 of 4) MIRb|SINE|MIR -359336 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 956-4 chr10 100570598 100570807 + 6 NA Intergenic Intergenic 34759 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 863-44 chr7 56637599 56637768 + 6 NA Intergenic L1PREC2|LINE|L1 -99553 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 930-9 chr13 25139153 25139336 + 6 NA Intergenic MamRep434|DNA|TcMar-Tigger 32923 NM_199138 219287 Hs.528335 NM_152704 ENSG00000165566 AMER2 FAM123A APC membrane recruitment protein 2 protein-coding 1756-2 chr5 124007062 124007784 + 6 NA Intergenic Intergenic 431097 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 1547-3 chr5 2423643 2424042 + 6 NA Intergenic L1MEf|LINE|L1 -111641 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 1575-2 chr3 54400791 54401363 + 6 NA intron (NM_018398, intron 4 of 37) L1MA6|LINE|L1 238780 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 1961 chr8 23600868 23601498 + 6 NA Intergenic L1MEf|LINE|L1 72227 NM_001317814 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 1522-2 chr22 24906317 24906875 + 6 NA intron (NM_001098498, intron 20 of 23) L1MB7|LINE|L1 40099 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 608-3 chr1 58154797 58154953 + 6 NA intron (NM_001353980, intron 1 of 5) LTR50|LTR|ERVL 95628 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 901 chr1 47605071 47605383 + 6 NA Intergenic L1MC4a|LINE|L1 -167910 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 1085-22 chr8 127554320 127554543 + 6 NA Intergenic Intergenic -72292 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 1419-7 chr8 138357324 138357884 + 6 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 139657 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1764 chr14 68529675 68530309 + 6 NA intron (NM_001321818, intron 10 of 10) L1MEi|LINE|L1 98795 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1198-3 chr10 43734869 43735245 + 6 NA Intergenic L1M4|LINE|L1 43768 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 843-40 chr8 38655024 38655226 + 6 NA Intergenic HAL1|LINE|L1 -53868 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 1069-13 chr8 122378481 122378785 + 6 NA Intergenic Intergenic 190011 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1715-3 chr5 35167263 35168013 + 6 NA intron (NM_000949, intron 1 of 9) L1MEg|LINE|L1 -49516 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 1387-6 chr9 98460901 98461304 + 6 NA intron (NM_005458, intron 6 of 18) L1MEg|LINE|L1 -205453 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 1106-10 chr7 5096940 5097264 + 6 NA Intergenic L1MA5|LINE|L1 25042 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1041-7 chr2 172193752 172194026 + 6 NA Intergenic L1M4|LINE|L1 90883 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 977-13 chr4 30680176 30680557 + 6 NA Intergenic Intergenic -40003 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 810-14 chr14 70416477 70416710 + 6 NA intron (NM_001202549, intron 1 of 4) intron (NM_001202549, intron 1 of 4) 497 NM_001202549 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 2298-3 chr21 22846499 22847248 + 6 NA Intergenic LTR25-int|LTR|ERV1 -232411 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 1305-4 chr4 30443011 30443471 + 6 NA Intergenic L1M3c|LINE|L1 -277128 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1351-2 chr15 81599618 81600113 + 6 NA Intergenic Intergenic -225652 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 914-10 chr15 60776729 60776969 + 6 NA intron (NM_134261, intron 1 of 10) L2a|LINE|L2 95280 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 744-48 chr4 29463253 29463446 + 6 NA Intergenic Intergenic 249057 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 522-18 chr10 43164073 43164271 + 6 NA intron (NM_001319654, intron 4 of 5) intron (NM_001319654, intron 4 of 5) 9275 NM_001319654 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 1138 chr1 34190510 34190878 + 6 NA intron (NM_001134734, intron 1 of 6) MIR|SINE|MIR 13787 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 1802 chr7 4428910 4429606 + 6 NA Intergenic Intergenic -253037 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1304-6 chr6 27357648 27358115 + 6 NA TTS (NR_002722) TTS (NR_002722) 13644 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 996-11 chr14 70431791 70432133 + 6 NA Intergenic L1PA8|LINE|L1 -14872 NM_018373 55333 Hs.443661 NM_018373 ENSG00000213463 SYNJ2BP ARIP2|OMP25 synaptojanin 2 binding protein protein-coding 1553 chr1 42056725 42057306 + 6 NA Intergenic L1ME3Cz|LINE|L1 -21081 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 1230-5 chr19 56422092 56422423 + 6 NA intron (NM_001159860, intron 4 of 4) intron (NM_001159860, intron 4 of 4) 17925 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 1572 chr10 41748140 41748714 + 6 NA Intergenic ALR/Alpha|Satellite|centr 619618 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1443 chr19 58265088 58265434 + 6 NA intron (NM_001320782, intron 6 of 6) intron (NM_001320782, intron 6 of 6) -13694 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 2772 chr19 36547790 36548650 + 6 NA exon (NM_001321351, exon 6 of 6) exon (NM_001321351, exon 6 of 6) -19949 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 795-34 chr2 215802197 215802488 + 6 NA intron (NR_037195, intron 1 of 9) L1MB8|LINE|L1 41194 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 1742-2 chr10 39298043 39298676 + 6 NA Intergenic ALR/Alpha|Satellite|centr 601763 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1269-2 chr11 34466836 34467286 + 6 NA intron (NM_001752, intron 10 of 12) intron (NM_001752, intron 10 of 12) 28127 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 2707 chr11 54966885 54967935 + 6 NA Intergenic ALR/Alpha|Satellite|centr 260578 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 844-19 chr15 69687294 69687686 + 6 NA intron (NR_126437, intron 5 of 5) MIRc|SINE|MIR 95290 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 576-124 chr4 148901659 148901816 + 6 NA Intergenic LTR32|LTR|ERVL 40641 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 1019-20 chr8 50603552 50603856 + 6 NA intron (NR_135797, intron 15 of 20) L1M1|LINE|L1 439573 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 649-55 chr2 150060066 150060284 + 6 NA Intergenic Intergenic 196832 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 1320-10 chr6 39993859 39994408 + 6 NA Intergenic HERV3-int|LTR|ERV1 -59671 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1311-2 chr11 93974749 93975216 + 6 NA Intergenic HAL1|LINE|L1 -46372 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 1707 chr18 1230317 1230804 + 6 NA Intergenic L1MB7|LINE|L1 129069 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 7024 chr7 6690773 6692843 + 6 NA exon (NM_016265, exon 5 of 5) exon (NM_016265, exon 5 of 5) 15139 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 1743-2 chr12 38517957 38518617 + 6 NA Intergenic Intergenic 201513 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 2429 chr7 46467634 46468280 + 6 NA Intergenic HUERS-P3-int|LTR|ERV1 229165 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 849-19 chr17 56272623 56272897 + 6 NA intron (NM_001370326, intron 3 of 20) L1MB3|LINE|L1 119285 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 1454 chr1 153326312 153326700 + 6 NA Intergenic L1M5|LINE|L1 -15788 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 2490 chr5 28013320 28014264 + 6 NA Intergenic HUERS-P3b-int|LTR|ERV1 273873 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 2006-2 chr7 101479545 101480161 + 6 NA intron (NM_133457, intron 3 of 12) L1MA4|LINE|L1 89153 NR_103749 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 1162 chr1 86617669 86617979 + 6 NA intron (NR_135837, intron 4 of 4) L1MA4|LINE|L1 -16452 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 1259-7 chr4 69563815 69564318 + 6 NA Intergenic L1M1|LINE|L1 -38052 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 1029-22 chr9 31956734 31957082 + 6 NA Intergenic L1MA9|LINE|L1 -427695 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 1000-18 chr5 3369482 3369749 + 6 NA Intergenic L1MA6|LINE|L1 -83201 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 886-17 chr2 54020263 54020472 + 6 NA intron (NM_001320587, intron 2 of 5) intron (NM_001320587, intron 2 of 5) 49254 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 1129-5 chr15 54925265 54925643 + 6 NA Intergenic L1M1|LINE|L1 -131293 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 1022-23 chr7 89970848 89971105 + 6 NA intron (NR_110029, intron 2 of 2) L1MA9|LINE|L1 -148424 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 569-80 chr19 37670520 37670655 + 6 NA intron (NM_152605, intron 3 of 3) intron (NM_152605, intron 3 of 3) -14326 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 1455-2 chr14 51531339 51531926 + 6 NA intron (NM_001042481, intron 1 of 14) MER63C|DNA|hAT-Blackjack 42504 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 1045-22 chr8 5224937 5225164 + 6 NA Intergenic HERVL40-int|LTR|ERVL -230136 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1640-2 chr6 22535431 22535935 + 6 NA Intergenic Intergenic -33883 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 1812-3 chrUn_KI270519v1 85316 85959 + 6 NA NA ALR/Alpha|Satellite|centr NA NA 1313-6 chr22 28383544 28383940 + 6 NA intron (NM_001145418, intron 2 of 22) L2a|LINE|L2 -76127 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 935-11 chr13 50669367 50669655 + 6 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -138344 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 1690-2 chr7 41597048 41597900 + 6 NA Intergenic L1M4b|LINE|L1 -96445 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 2979 chr16 73449390 73450403 + 6 NA Intergenic HAL1b|LINE|L1 63091 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 2371 chr19 27591347 27592289 + 6 NA Intergenic ALR/Alpha|Satellite|centr -201613 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 971-8 chr12 118991794 118992185 + 6 NA intron (NM_194286, intron 1 of 12) Charlie7|DNA|hAT-Charlie 10448 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 841-18 chr2 151118464 151118690 + 6 NA Intergenic MIR3|SINE|MIR 143286 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 1048-17 chr3 60972467 60972755 + 6 NA intron (NR_148922, intron 3 of 3) L1MEg|LINE|L1 278841 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 1696 chr5 24761466 24762150 + 6 NA Intergenic L1PB4|LINE|L1 78775 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 1768-2 chr16 68565251 68565846 + 6 NA non-coding (NR_130978, exon 5 of 5) non-coding (NR_130978, exon 5 of 5) 26257 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 900-41 chr7 71369836 71370030 + 6 NA intron (NM_022479, intron 2 of 10) intron (NM_022479, intron 2 of 10) -62163 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 1579-3 chr8 69350170 69350844 + 6 NA Intergenic MER45B|DNA|hAT-Tip100 97737 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 1124-10 chr6 50166777 50167028 + 6 NA Intergenic HAL1M8|LINE|L1 -116973 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 982-32 chr8 125459304 125459603 + 6 NA Intergenic MIRb|SINE|MIR 27244 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 887-29 chr7 77208299 77208592 + 6 NA intron (NM_020879, intron 2 of 18) Tigger3a|DNA|TcMar-Tigger -8626 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 1331-4 chr5 16009385 16009865 + 6 NA Intergenic MLT1H2|LTR|ERVL-MaLR 74443 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 1221-4 chr3 65239128 65239415 + 6 NA Intergenic Intergenic -551271 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 881-23 chr2 229936214 229936536 + 6 NA intron (NM_174899, intron 1 of 3) intron (NM_174899, intron 1 of 3) -13195 NM_001348335 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 1275-2 chr14 57950038 57950465 + 6 NA Intergenic L1PBa|LINE|L1 -84159 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 1746 chr15 67683999 67684584 + 6 NA intron (NM_001206804, intron 13 of 21) L1MEc|LINE|L1 135197 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 1259-11 chr8 59606721 59607251 + 6 NA Intergenic Tigger2|DNA|TcMar-Tigger 487776 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 1215-10 chr5 150916174 150916615 + 6 NA Intergenic Intergenic -11411 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 2326 chr12 63239825 63240499 + 6 NA Intergenic L1ME1|LINE|L1 -87352 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 1076-26 chr9 105224091 105224447 + 6 NA Intergenic L1M4b|LINE|L1 -20336 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 2432 chr18 13958901 13959822 + 6 NA Intergenic Intergenic -43654 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 1600-3 chr2 22266391 22267079 + 6 NA Intergenic L1MEc|LINE|L1 -269744 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 830-53 chr8 87951165 87951512 + 6 NA Intergenic Intergenic -77323 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 746-10 chr10 32644084 32644328 + 6 NA intron (NM_001321115, intron 21 of 43) L1MA6|LINE|L1 198066 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 836-29 chr2 33758805 33759034 + 6 NA intron (NR_126403, intron 1 of 5) HAL1b|LINE|L1 -30702 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 1169 chr1 240164581 240164920 + 6 NA intron (NM_020066, intron 2 of 17) L1MEg|LINE|L1 72867 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 1018-33 chr8 139201995 139202255 + 6 NA Intergenic Intergenic -288084 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 912-20 chr19 36891709 36891985 + 6 NA exon (NM_001171979, exon 6 of 6) exon (NM_001171979, exon 6 of 6) 24192 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 1481-5 chr5 180255878 180256235 + 6 NA intron (NM_001364608, intron 6 of 12) intron (NM_001364608, intron 6 of 12) 24552 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 1117-7 chr3 28969105 28969480 + 6 NA Intergenic L1MA4A|LINE|L1 311647 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 1148-3 chr2 50078223 50078598 + 6 NA intron (NM_001330093, intron 19 of 22) L1MC4a|LINE|L1 -104207 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1431-2 chr21 27621086 27621824 + 6 NA Intergenic Intergenic -100924 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1065-8 chr21 19939897 19940195 + 6 NA Intergenic Intergenic -40291 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 852-15 chr12 90287179 90287442 + 6 NA Intergenic A-rich|Low_complexity|Low_complexity -6008 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 1745 chr10 58533849 58534332 + 6 NA intron (NM_001080512, intron 1 of 20) L1M4c|LINE|L1 21218 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 1132-4 chr14 66009892 66010262 + 6 NA Intergenic Charlie7|DNA|hAT-Charlie -476294 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 1588-2 chr16 3407469 3407955 + 6 NA intron (NM_003450, intron 2 of 2) intron (NM_003450, intron 2 of 2) 6497 NM_001347870 7727 Hs.155204 NM_003450 ENSG00000103343 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 1385-6 chr5 25074350 25074876 + 6 NA Intergenic Intergenic 116043 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 1515-4 chr4 64463732 64464148 + 6 NA Intergenic Intergenic -54480 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1048-7 chr12 118974976 118975327 + 6 NA Intergenic Intergenic -6390 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 1080-8 chr14 67112042 67112369 + 6 NA intron (NM_001024218, intron 14 of 21) intron (NM_001024218, intron 14 of 21) -77235 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 732-12 chr10 65612380 65612559 + 6 NA intron (NR_120647, intron 2 of 5) intron (NR_120647, intron 2 of 5) 41044 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 2069 chr12 133123708 133124194 + 6 NA intron (NM_001277291, intron 1 of 1) intron (NM_001277291, intron 1 of 1) 6522 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 1126 chr1 40464431 40464870 + 6 NA TTS (NM_023070) TTS (NM_023070) -12640 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 1006-15 chr2 49539440 49539734 + 6 NA Intergenic L1MA3|LINE|L1 -385060 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 835-31 chr2 127237054 127237203 + 6 NA Intergenic L1MCa|LINE|L1 -16829 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 2147-2 chr7 81260341 81260886 + 6 NA Intergenic L1MCa|LINE|L1 301206 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 1432-4 chr22 27356535 27356963 + 6 NA Intergenic L1ME3|LINE|L1 46098 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 867-27 chr21 25211842 25212084 + 6 NA Intergenic Intergenic 219738 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 2579 chr19 57978810 57979671 + 6 NA exon (NM_001348022, exon 7 of 7) exon (NM_001348022, exon 7 of 7) -4706 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 1259-3 chr14 71747699 71748032 + 6 NA Intergenic Intergenic 161567 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 2747 chr5 140763507 140764430 + 6 NA Intergenic (AATAGT)n|Simple_repeat|Simple_repeat -22168 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 1546-2 chr3 70352405 70352846 + 6 NA Intergenic L1MD1|LINE|L1 -39987 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 1973-3 chr7 56314947 56315590 + 6 NA Intergenic Intergenic 133107 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 1022-8 chr11 111060908 111061345 + 6 NA Intergenic Intergenic 36192 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 524-121 chr2 142427550 142427682 + 6 NA Intergenic L1M6|LINE|L1 -295915 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 1302-8 chrX 104700568 104701083 + 6 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 134626 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 1275 chr1 234286192 234286715 + 6 NA intron (NM_173508, intron 3 of 7) L3|LINE|CR1 -20014 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 1099-22 chr6 88834702 88835106 + 6 NA intron (NM_003800, intron 11 of 15) intron (NM_003800, intron 11 of 15) 128714 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 596-179 chr9 117315775 117316023 + 6 NA intron (NM_014010, intron 1 of 21) intron (NM_014010, intron 1 of 21) 99158 NM_001365068 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 861-7 chr13 48781607 48781914 + 6 NA Intergenic L1PBb|LINE|L1 127831 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 906-17 chr12 133207359 133207637 + 6 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 26003 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 1129-3 chr13 53083917 53084238 + 6 NA Intergenic Intergenic 55264 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 830-27 chr20 56097925 56098179 + 6 NA Intergenic L1MD|LINE|L1 -92533 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 855-43 chr6 40012334 40012632 + 6 NA Intergenic L1MA4|LINE|L1 -78021 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 899-16 chr2 240064505 240064771 + 6 NA Intergenic L1MEg|LINE|L1 -18566 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 924-42 chr8 137955765 137956109 + 6 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 127608 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 2002 chr5 151930444 151931419 + 6 NA Intergenic L1MEg|LINE|L1 -6080 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 696-44 chr15 94977073 94977267 + 6 NA Intergenic MLT1B|LTR|ERVL-MaLR 121807 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 1829 chr7 5059523 5060084 + 6 NA intron (NM_001204513, intron 4 of 5) intron (NM_001204513, intron 4 of 5) -12257 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 872-47 chr7 130857619 130857912 + 6 NA Intergenic L1MA4|LINE|L1 19045 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 1365-3 chr2 114172451 114172945 + 6 NA Intergenic Intergenic -192714 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 969-3 chr10 44639032 44639286 + 6 NA Intergenic L1MEg|LINE|L1 -254062 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 2689 chr2 104262873 104263825 + 6 NA Intergenic L1MA9|LINE|L1 144983 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 1688-2 chr20 59656595 59657270 + 6 NA intron (NM_001281507, intron 1 of 12) L1M4b|LINE|L1 -19729 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 942-18 chr2 183864375 183864657 + 6 NA Intergenic Intergenic -514459 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 1084-12 chr21 15633250 15633601 + 6 NA Intergenic MSTA|LTR|ERVL-MaLR -96509 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 748-30 chr14 61959437 61959727 + 6 NA intron (NM_001367663, intron 1 of 7) L1MA10|LINE|L1 31887 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 2426 chr10 130280626 130281495 + 6 NA Intergenic Intergenic 144651 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 1119-12 chr9 12007871 12008157 + 6 NA Intergenic Intergenic -685371 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 1212-8 chr3 74556344 74556573 + 6 NA Intergenic L1MB7|LINE|L1 -35318 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 988-7 chr14 50026419 50026727 + 6 NA intron (NR_131171, intron 6 of 8) intron (NR_131171, intron 6 of 8) -19053 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 1818 chr10 43558997 43559873 + 6 NA intron (NM_001099283, intron 1 of 1) L2c|LINE|L2 9024 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 871-41 chr8 124664806 124665115 + 6 NA intron (NM_001282971, intron 3 of 14) MER104|DNA|TcMar-Tc2 63513 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 877-31 chr7 9819405 9819709 + 6 NA Intergenic Intergenic 185287 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 1629-6 chr7 2028472 2029148 + 6 NA intron (NM_001013837, intron 12 of 18) L1MEg|LINE|L1 60242 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 1002-2 chr10 76709848 76710214 + 6 NA Intergenic L1HS|LINE|L1 -178013 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 1169-6 chr2 238603288 238603728 + 6 NA Intergenic L1MEd|LINE|L1 -48009 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 1168-4 chr7 54497661 54497940 + 6 NA Intergenic MER96B|DNA|hAT-Tip100 -44525 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 1353 chr11 62048244 62048580 + 6 NA Intergenic Intergenic -75599 NM_001040694 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 1305-3 chr3 181033073 181033527 + 6 NA Intergenic Intergenic -23380 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 1521-3 chr2 108235676 108236274 + 6 NA Intergenic Intergenic -3993 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 1023-17 chr3 19913106 19913454 + 6 NA intron (NM_001330688, intron 7 of 14) L1M1|LINE|L1 20937 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 486-139 chr2 63437581 63437768 + 6 NA intron (NR_148704, intron 8 of 18) intron (NR_148704, intron 8 of 18) 333 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 1176-7 chr2 203636322 203636675 + 6 NA Intergenic AluSg|SINE|Alu -69977 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 638-36 chr13 106954107 106954267 + 6 NA Intergenic MLT1D|LTR|ERVL-MaLR 300307 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 803-60 chr8 133879080 133879408 + 6 NA Intergenic L1MB2|LINE|L1 -7252 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1134-9 chr17 34763970 34764532 + 6 NA Intergenic Intergenic 183502 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 2125 chr14 72285905 72286772 + 6 NA intron (NM_001370288, intron 2 of 16) L1MA10|LINE|L1 -230482 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 1018-5 chr11 15267418 15267718 + 6 NA Intergenic L1MEc|LINE|L1 118466 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 1386 chr15 81992596 81992909 + 6 NA Intergenic L1M1|LINE|L1 53266 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 1496-2 chr4 97301259 97301788 + 6 NA Intergenic L1MA4|LINE|L1 -65403 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 1093-10 chr3 74563964 74564382 + 6 NA Intergenic L2c|LINE|L2 -43033 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 910-35 chr5 155859850 155860139 + 6 NA Intergenic LTR81B|LTR|Gypsy -466763 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 2060 chr11 99919884 99920740 + 6 NA intron (NM_001243270, intron 6 of 23) L2a|LINE|L2 364167 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 960-34 chr6 14336014 14336314 + 6 NA Intergenic Intergenic -50710 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 2147 chr2 186783261 186784091 + 6 NA Intergenic L1M3f|LINE|L1 65494 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 1433-3 chr21 28370079 28370513 + 6 NA Intergenic L1MA3|LINE|L1 -141629 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 1096 chr1 43190655 43191039 + 6 NA intron (NM_001195831, intron 6 of 23) L1MB7|LINE|L1 -18277 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 1173-9 chr22 32012488 32012781 + 6 NA intron (NR_149128, intron 4 of 4) L1M4c|LINE|L1 -30627 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 1080-13 chr19 51827966 51828330 + 6 NA intron (NR_163433, intron 9 of 11) AluSz|SINE|Alu 32991 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 2345 chr8 84309139 84309898 + 6 NA intron (NM_001354320, intron 2 of 9) L1M7|LINE|L1 -105966 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 679-72 chr3 73960525 73960706 + 6 NA Intergenic Intergenic 151371 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 1189-4 chr7 684985 685319 + 6 NA intron (NM_001164760, intron 2 of 10) intron (NM_001164760, intron 2 of 10) 27372 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 1624 chr15 39209425 39210157 + 6 NA Intergenic L2b|LINE|L2 -40878 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 2006 chr1 115249949 115250657 + 6 NA Intergenic L1ME3D|LINE|L1 -32731 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 1151-7 chr2 118890803 118891087 + 6 NA Intergenic L1M8|LINE|L1 -42762 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 801-44 chr5 56418761 56419005 + 6 NA Intergenic Intergenic 62886 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 795 chr1 60582935 60583195 + 6 NA intron (NR_146508, intron 4 of 7) L1MEd|LINE|L1 39620 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 1077-4 chr11 133259581 133259866 + 6 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 272778 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 1672-5 chr8 66275438 66275928 + 6 NA Intergenic MER34A|LTR|ERV1 83569 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 592-127 chr4 90212462 90212611 + 6 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -22495 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 892-34 chr6 75042130 75042602 + 6 NA Intergenic AluSx|SINE|Alu 86416 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 2114-2 chr4 76324586 76325488 + 6 NA intron (NM_001042784, intron 22 of 23) LTR47A|LTR|ERVL 19011 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 759-61 chr5 180258228 180258527 + 6 NA intron (NM_001364608, intron 6 of 12) intron (NM_001364608, intron 6 of 12) 22231 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 1401 chr14 50456399 50456944 + 6 NA intron (NM_198794, intron 13 of 31) intron (NM_198794, intron 13 of 31) -59373 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 834-10 chr14 51497872 51498081 + 6 NA intron (NM_001042481, intron 1 of 14) MLT1H-int|LTR|ERVL-MaLR 8848 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 1596-3 chr2 55473264 55473819 + 6 NA Intergenic L1MB5|LINE|L1 -46054 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 960-31 chr5 100236540 100236748 + 6 NA Intergenic L1PREC2|LINE|L1 151610 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 978-11 chr2 51925485 51925825 + 6 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -444993 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 411-316 chrUn_GL000216v2 10316 10407 + 6 NA NA (CATTC)n|Satellite|Satellite NA NA 1192-2 chr16 60897432 60897952 + 6 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 158074 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 1264-2 chr11 114330031 114330424 + 6 NA Intergenic Intergenic 34414 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 1108 chr10 53516596 53516923 + 6 NA Intergenic Intergenic -745059 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 1173-11 chr4 85215231 85215575 + 6 NA Intergenic L1MA2|LINE|L1 247919 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 1146-2 chr1 29464267 29464597 + 6 NA Intergenic L1MEc|LINE|L1 -114318 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 1394-4 chr6 62644532 62644970 + 6 NA Intergenic Intergenic -358524 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 2690 chr15 58582234 58583522 + 6 NA Intergenic L1MEj|LINE|L1 -84143 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 3170 chr7 5093663 5094629 + 6 NA Intergenic L1M4|LINE|L1 22086 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1626 chr15 62262673 62263213 + 6 NA Intergenic LTR10E|LTR|ERV1 -14148 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 1639-3 chr17 67048506 67049228 + 6 NA intron (NM_000727, intron 1 of 3) L1M4|LINE|L1 4313 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 934-10 chr11 10045850 10046107 + 6 NA intron (NM_030962, intron 2 of 39) MER2|DNA|TcMar-Tigger 206836 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 1083-12 chr7 702154 702473 + 6 NA intron (NM_001164760, intron 2 of 10) L1ME1|LINE|L1 10211 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 1378 chr10 112840888 112841481 + 6 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 17688 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 1357 chr10 41746861 41747234 + 6 NA Intergenic ALR/Alpha|Satellite|centr 620998 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1693-2 chr10 41883483 41884148 + 6 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 484230 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 3212 chr10 83747940 83749084 + 6 NA Intergenic L1MD|LINE|L1 -71423 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1274 chr10 41760701 41761154 + 6 NA Intergenic ALR/Alpha|Satellite|centr 607118 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 831-19 chr2 51585699 51585887 + 6 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 553192 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 1203-12 chr4 105536105 105536433 + 6 NA Intergenic Intergenic -16351 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 1837-3 chr8 58441518 58442196 + 6 NA intron (NM_001077619, intron 6 of 7) intron (NM_001077619, intron 6 of 7) 30496 NM_001077619 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 850-24 chr2 188494973 188495142 + 6 NA intron (NM_001252669, intron 4 of 8) L2c|LINE|L2 197565 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 1050-14 chr8 4395455 4396048 + 6 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 599163 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1534 chr2 39361420 39361883 + 6 NA intron (NM_003618, intron 2 of 33) intron (NM_003618, intron 2 of 33) 75634 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 2483 chr4 30441350 30442476 + 6 NA Intergenic Intergenic -278456 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1367-4 chr8 119319193 119319688 + 6 NA Intergenic Intergenic -5731 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 1218-6 chr7 4402264 4402633 + 6 NA Intergenic MER77|LTR|ERVL -267611 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 1392-2 chr4 159536394 159536786 + 6 NA Intergenic L1MA7|LINE|L1 241194 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 501-215 chr5 116796235 116796356 + 5 NA Intergenic Intergenic -34086 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 1119 chr10 34297329 34297780 + 5 NA intron (NM_001184790, intron 18 of 22) intron (NM_001184790, intron 18 of 22) 517742 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 768-41 chr5 55873779 55874016 + 5 NA intron (NM_001297572, intron 4 of 10) L1MB7|LINE|L1 20575 NM_001242639 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 585-92 chr22 34594251 34594466 + 5 NA Intergenic Intergenic 403558 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 2529 chr14 66405583 66406407 + 5 NA Intergenic L1M6|LINE|L1 -80376 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 839-9 chr12 37906426 37906622 + 5 NA Intergenic ALR/Alpha|Satellite|centr -410250 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 756-44 chr4 46641479 46641811 + 5 NA Intergenic L1MC3|LINE|L1 -251517 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 1498 chr7 53323480 53324082 + 5 NA Intergenic Intergenic 288148 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 365-318 chr5 49666170 49666274 + 5 NA Intergenic (CATTC)n|Satellite|Satellite 775066 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 2132 chr5 150938554 150939408 + 5 NA intron (NR_026867, intron 4 of 4) L1MB8|LINE|L1 7603 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 782-18 chr14 26785638 26785899 + 5 NA intron (NR_147061, intron 6 of 6) intron (NR_147061, intron 6 of 6) -23580 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 727-93 chr9 84416963 84417151 + 5 NA Intergenic HAL1b|LINE|L1 -48330 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 773-35 chr4 167962538 167962830 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -129853 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 769-12 chr12 108004427 108004711 + 5 NA Intergenic Intergenic -100798 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 795-24 chr17 62864160 62864489 + 5 NA Intergenic Intergenic 55822 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 1251-6 chr4 60279998 60280507 + 5 NA Intergenic Intergenic -642367 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 795-2 chr1 82546993 82547253 + 5 NA Intergenic Intergenic -356060 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 800-66 chr8 132887532 132887714 + 5 NA intron (NM_003235, intron 9 of 47) intron (NM_003235, intron 9 of 47) 20665 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 626-53 chr19 27960550 27960770 + 5 NA intron (NR_146734, intron 3 of 7) HAL1|LINE|L1 -166720 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 583-92 chr2 145661744 145661885 + 5 NA Intergenic Intergenic -925243 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 933-11 chr14 45911267 45911697 + 5 NA Intergenic MIR|SINE|MIR -152677 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 771-35 chr18 5121569 5121814 + 5 NA Intergenic L1M2|LINE|L1 40509 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1852-3 chr12 133012764 133013561 + 5 NA 3' UTR (NM_001330513, exon 5 of 5) 3' UTR (NM_001330513, exon 5 of 5) 24060 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 930-6 chr11 46647407 46647711 + 5 NA intron (NM_001346358, intron 4 of 16) AluSx|SINE|Alu 30283 NM_001346356 9776 Hs.127403 NM_014741 ENSG00000175224 ATG13 KIAA0652|PARATARG8 autophagy related 13 protein-coding 1044-8 chr16 80929077 80929461 + 5 NA Intergenic Intergenic -36673 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 1291-5 chr8 90716626 90716994 + 5 NA Intergenic L1P4|LINE|L1 -70727 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 948-25 chr21 45048836 45049046 + 5 NA Intergenic Intergenic 24270 NR_027292 728039 Hs.309203 NM_032653 ENSG00000235374 SSR4P1 C21orf122|PRED57|PRED90 signal sequence receptor subunit 4 pseudogene 1 pseudo 1664 chr10 45029185 45029831 + 5 NA Intergenic Intergenic 28585 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 918-15 chr2 129330779 129331128 + 5 NA Intergenic Charlie1b|DNA|hAT-Charlie -57062 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 652-25 chr11 37362780 37363007 + 5 NA Intergenic Intergenic -575708 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 1066-18 chr8 63357588 63357933 + 5 NA Intergenic Intergenic -108089 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 2277 chr14 43003622 43004372 + 5 NA Intergenic HUERS-P3-int|LTR|ERV1 1397141 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 625-90 chr5 150889692 150889918 + 5 NA intron (NM_001346557, intron 3 of 3) L1MEc|LINE|L1 15178 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 952-31 chr9 15495192 15495561 + 5 NA intron (NM_001317900, intron 3 of 10) Tigger6a|DNA|TcMar-Tigger 14913 NM_021144 11168 Hs.658434 NM_021144 ENSG00000164985 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding 614-63 chr2 224728008 224728215 + 5 NA Intergenic L1MEi|LINE|L1 -142714 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 1123-11 chr20 21544532 21544854 + 5 NA Intergenic MSTA|LTR|ERVL-MaLR -25331 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 804-66 chr7 84938444 84938770 + 5 NA Intergenic L1MA8|LINE|L1 183324 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 1523 chr8 133168075 133168622 + 5 NA Intergenic MLT1C|LTR|ERVL-MaLR -22691 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 782-42 chr3 8199795 8200038 + 5 NA Intergenic Intergenic -183609 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 706-67 chr7 12387502 12387671 + 5 NA intron (NM_001135924, intron 3 of 28) (TA)n|Simple_repeat|Simple_repeat 16279 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 1077-11 chr4 35753520 35753799 + 5 NA Intergenic L1MA3|LINE|L1 490280 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 699-46 chr2 5323667 5324055 + 5 NA Intergenic Intergenic 367257 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 576-123 chr4 96610172 96610315 + 5 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 299540 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 694-87 chr3 99487988 99488274 + 5 NA Intergenic L1MA8|LINE|L1 -150463 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 1056-22 chr8 135321518 135321915 + 5 NA Intergenic MIR|SINE|MIR 87585 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 756-60 chr8 99375641 99375968 + 5 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 160926 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 841-33 chr5 117262223 117262414 + 5 NA Intergenic Intergenic -153194 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 1638 chr3 86677714 86678281 + 5 NA Intergenic L1PA16|LINE|L1 196054 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 2100 chr8 88663115 88663875 + 5 NA Intergenic L1MA9|LINE|L1 -336012 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 819-21 chr3 118720665 118720948 + 5 NA intron (NR_135547, intron 1 of 3) L1MD1|LINE|L1 79038 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 1199-7 chr2 82405546 82405884 + 5 NA Intergenic Intergenic -451088 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 872-49 chr8 58859249 58859489 + 5 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -199516 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 1093-11 chr5 46041150 46041618 + 5 NA Intergenic ALR/Alpha|Satellite|centr -345004 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 818-25 chr2 99126997 99127461 + 5 NA intron (NM_001349013, intron 1 of 16) intron (NM_001349013, intron 1 of 16) 13951 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 1321-9 chr5 98663641 98664347 + 5 NA Intergenic L1M1|LINE|L1 -104638 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 423-18 chr1 233523443 233523621 + 5 NA Intergenic Intergenic -90574 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 795-17 chr12 21956598 21956877 + 5 NA Intergenic MIRb|SINE|MIR -20043 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 1467 chr1 112073696 112074328 + 5 NA Intergenic L1ME3A|LINE|L1 83476 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 1040-6 chr16 48749170 48749481 + 5 NA Intergenic L1ME3C|LINE|L1 -139145 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 1225 chr11 70588336 70588939 + 5 NA intron (NM_133266, intron 2 of 10) Tigger1|DNA|TcMar-Tigger -42457 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 819-29 chr5 82563039 82563265 + 5 NA Intergenic L1PREC2|LINE|L1 -277003 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 337-223 chr18 54314808 54314881 + 5 NA intron (NR_147257, intron 9 of 9) L1PA16|LINE|L1 39729 NR_138549 147323 Hs.438779 NM_139171 ENSG00000174448 STARD6 - StAR related lipid transfer domain containing 6 protein-coding 694-41 chr15 24781320 24781529 + 5 NA Intergenic L1MC3|LINE|L1 -42184 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 1355-5 chr2 185130412 185130862 + 5 NA Intergenic Intergenic 36435 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 1147 chr1 41141050 41141498 + 5 NA intron (NM_001172218, intron 7 of 15) MER58A|DNA|hAT-Charlie 20158 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 1020-4 chr12 37989534 37989956 + 5 NA Intergenic ALR/Alpha|Satellite|centr -327029 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 965-22 chr7 95758502 95758702 + 5 NA Intergenic Intergenic -13904 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 524-257 chr8 74826425 74826637 + 5 NA intron (NM_015886, intron 2 of 5) intron (NM_015886, intron 2 of 5) 1997 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 869-42 chr5 19490747 19491146 + 5 NA intron (NM_001349559, intron 11 of 12) intron (NM_001349559, intron 11 of 12) 395326 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 1362 chr10 43896648 43897189 + 5 NA Intergenic L2|LINE|L2 -12378 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 1080-10 chr15 92475188 92475548 + 5 NA intron (NR_161371, intron 2 of 2) MLT1A|LTR|ERVL-MaLR 3691 NR_161371 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 727-49 chr2 238802028 238802310 + 5 NA Intergenic L1MEi|LINE|L1 45738 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 1018-13 chr16 59165908 59166208 + 5 NA Intergenic Intergenic -431742 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 1345-5 chr3 19495761 19496304 + 5 NA intron (NM_144633, intron 11 of 15) L1PREC2|LINE|L1 -181101 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 773-17 chr2 124213356 124213592 + 5 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 188187 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 522-150 chr2 203991731 203991888 + 5 NA Intergenic L2c|LINE|L2 55061 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 1598-4 chr6 28187997 28188624 + 5 NA Intergenic Intergenic 26549 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 724-76 chr5 155794616 155794794 + 5 NA Intergenic L1MEg|LINE|L1 -532052 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 796-3 chr1 178197515 178197822 + 5 NA intron (NM_170692, intron 1 of 17) L1M5|LINE|L1 103564 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 833-6 chr12 112660115 112660472 + 5 NA intron (NM_001347952, intron 1 of 21) L1MC4|LINE|L1 34883 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 909-25 chr7 2660681 2660966 + 5 NA intron (NM_025250, intron 13 of 13) intron (NM_025250, intron 13 of 13) -18699 NM_133463 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 1086-4 chr1 86235211 86235648 + 5 NA Intergenic Intergenic -78445 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 1077-5 chr14 72214800 72215244 + 5 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 281495 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 737-57 chr3 40076070 40076363 + 5 NA intron (NM_001284425, intron 3 of 15) AluJb|SINE|Alu -23795 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 827-9 chr12 44493815 44494092 + 5 NA Intergenic Intergenic 381708 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 932-23 chr5 94235767 94236193 + 5 NA intron (NM_001145678, intron 20 of 20) Tigger1|DNA|TcMar-Tigger -124281 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 1632-3 chr2 95149650 95150200 + 5 NA exon (NM_032788, exon 5 of 5) exon (NM_032788, exon 5 of 5) 9660 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 1334-4 chr8 46836888 46837295 + 5 NA Intergenic Intergenic -3795 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 405-319 chr8 75165108 75165332 + 5 NA Intergenic Intergenic 113261 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 800-47 chr4 63052082 63052292 + 5 NA Intergenic Intergenic -890422 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1311-4 chr21 27785635 27786137 + 5 NA Intergenic L2a|LINE|L2 63507 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1171-8 chr18 37156606 37156932 + 5 NA intron (NR_136303, intron 8 of 13) L2|LINE|L2 -117691 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 722-87 chrX 86935151 86935407 + 5 NA Intergenic L1PA15|LINE|L1 -582523 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 1165-11 chr8 36862542 36862992 + 5 NA intron (NM_001031836, intron 18 of 26) intron (NM_001031836, intron 18 of 26) 78393 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 725-45 chr5 3913147 3913438 + 5 NA Intergenic Intergenic 317460 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 839-54 chr8 130637889 130638184 + 5 NA Intergenic MLT1B|LTR|ERVL-MaLR -194362 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 786-56 chr6 15800200 15800405 + 5 NA Intergenic MIR|SINE|MIR -137244 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 395-310 chr7 39575314 39575404 + 5 NA intron (NM_001282446, intron 2 of 2) intron (NM_001282446, intron 2 of 2) 8955 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 694-16 chr10 63147903 63148052 + 5 NA intron (NM_030759, intron 2 of 3) intron (NM_030759, intron 2 of 3) 14649 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 379-231 chr4 37309875 37310045 + 5 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 65217 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 844-21 chr16 76413795 76414061 + 5 NA intron (NR_136213, intron 3 of 23) L1ME3A|LINE|L1 104076 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 647-28 chr14 62888887 62889144 + 5 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 156443 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 893-20 chr16 5885044 5885495 + 5 NA Intergenic Intergenic -133755 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 781-59 chr6 119752011 119752212 + 5 NA intron (NR_134600, intron 2 of 3) L1PA17|LINE|L1 202303 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 988-44 chrX 87324541 87324832 + 5 NA Intergenic Intergenic -193116 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 874-30 chr8 70701543 70701903 + 5 NA intron (NM_001287258, intron 4 of 5) intron (NM_001287258, intron 4 of 5) 32384 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 664-39 chr14 62778607 62778830 + 5 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 266740 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 844-26 chr18 1884232 1884609 + 5 NA Intergenic Intergenic -524791 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 949-22 chr7 64929285 64929644 + 5 NA non-coding (NR_003099, exon 5 of 5) non-coding (NR_003099, exon 5 of 5) 26222 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 1636 chr3 132109551 132110036 + 5 NA Intergenic L1MA3|LINE|L1 -70187 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 711-67 chr8 20188979 20189140 + 5 NA Intergenic MIR|SINE|MIR -5853 NM_001135691 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 1065-17 chr8 104054213 104054487 + 5 NA intron (NM_001348499, intron 19 of 23) intron (NM_001348499, intron 19 of 23) -168985 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 881-19 chr18 73955700 73955945 + 5 NA Intergenic Intergenic 192012 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 821-39 chr4 36114904 36115139 + 5 NA intron (NR_146894, intron 25 of 32) intron (NR_146894, intron 25 of 32) 128918 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 1630-2 chr2 119499398 119500191 + 5 NA intron (NM_002980, intron 1 of 12) L1MDa|LINE|L1 23340 NR_147846 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 585-137 chr6 53762907 53763142 + 5 NA Intergenic L1PA10|LINE|L1 -31981 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 1246-10 chr5 105607367 105607861 + 5 NA Intergenic L1MA4|LINE|L1 508140 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 643-63 chr20 7432644 7432855 + 5 NA Intergenic (TGTGA)n|Simple_repeat|Simple_repeat 61141 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 770-2 chr10 44000399 44000610 + 5 NA Intergenic Intergenic 88102 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 818-41 chr4 65135267 65135567 + 5 NA Intergenic L1M1|LINE|L1 -130917 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 1594-3 chrX 47911733 47912132 + 5 NA intron (NM_007137, intron 4 of 4) intron (NM_007137, intron 4 of 4) 75030 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 921-25 chr8 87402282 87402594 + 5 NA Intergenic Intergenic 471577 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 693-26 chr14 25130245 25130484 + 5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -80067 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 775-73 chr6 46446851 46447054 + 5 NA intron (NM_001251973, intron 2 of 4) L1MA8|LINE|L1 44371 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 874-17 chr3 44595592 44595835 + 5 NA 3' UTR (NM_173658, exon 3 of 3) 3' UTR (NM_173658, exon 3 of 3) 10749 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 824-43 chr6 51153244 51153598 + 5 NA Intergenic Intergenic 334550 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 903-8 chr12 40027965 40028346 + 5 NA intron (NM_052885, intron 3 of 9) (AT)n|Simple_repeat|Simple_repeat 77926 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 774-58 chr3 63415029 63415328 + 5 NA intron (NM_001130003, intron 2 of 5) MER63D|DNA|hAT-Blackjack -28134 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 524-180 chr4 79840094 79840305 + 5 NA intron (NR_026555, intron 1 of 1) L1PA3|LINE|L1 12728 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 734-40 chr2 180112591 180112788 + 5 NA Intergenic Intergenic -105392 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 704-36 chr2 4240043 4240209 + 5 NA Intergenic Intergenic 265965 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 878-35 chr5 40377949 40378142 + 5 NA Intergenic Intergenic -301870 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 1082-13 chr3 146172066 146172383 + 5 NA Intergenic HAL1|LINE|L1 -10729 NM_000935 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 934-5 chr10 38497122 38497472 + 5 NA Intergenic Intergenic 69151 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 501-174 chr3 132353450 132353584 + 5 NA intron (NM_001292037, intron 8 of 8) intron (NM_001292037, intron 8 of 8) 36110 NM_001134194 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 692-83 chr6 40173111 40173281 + 5 NA Intergenic Intergenic 182810 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 820-50 chr5 156751998 156752305 + 5 NA intron (NM_001128209, intron 6 of 7) L1ME3E|LINE|L1 -98144 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 1012 chr1 56261888 56262179 + 5 NA Intergenic L2b|LINE|L2 -152930 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 876-13 chr15 58124022 58124324 + 5 NA Intergenic MLT2F|LTR|ERVL -13996 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 482-113 chr19 20004780 20004989 + 5 NA 3' UTR (NM_033196, exon 4 of 4) 3' UTR (NM_033196, exon 4 of 4) 34371 NM_001077349 91120 Hs.306298 NM_033196 ENSG00000197124 ZNF682 BC39498_3 zinc finger protein 682 protein-coding 1490-4 chr2 31687828 31688494 + 5 NA Intergenic HUERS-P3-int|LTR|ERV1 -107223 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 1195-12 chr4 95995877 95996303 + 5 NA Intergenic Intergenic 155997 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 821-24 chr2 80926747 80927084 + 5 NA Intergenic Intergenic 540031 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 525-58 chr12 89993230 89993442 + 5 NA Intergenic Intergenic 45643 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 820-25 chr2 6305109 6305379 + 5 NA Intergenic Intergenic 70178 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 687-36 chr14 62352550 62352765 + 5 NA Intergenic L1PA4|LINE|L1 -212684 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1763 chr18 1186468 1187119 + 5 NA Intergenic L2b|LINE|L2 172836 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 821-30 chr20 12431299 12431599 + 5 NA Intergenic (TTTTC)n|Simple_repeat|Simple_repeat 505514 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 753-19 chr14 25393890 25394086 + 5 NA Intergenic Intergenic -343691 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 785-43 chr4 145053001 145053161 + 5 NA intron (NM_001256710, intron 4 of 5) intron (NM_001256710, intron 4 of 5) 44301 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 830-35 chr3 180555753 180555997 + 5 NA Intergenic Intergenic -46288 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 858-13 chr13 74532442 74532774 + 5 NA Intergenic Intergenic -20235 NR_034025 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 1278-2 chr17 70984236 70984733 + 5 NA Intergenic THE1B-int|LTR|ERVL-MaLR 217695 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 842-8 chr11 2631125 2631347 + 5 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 68762 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 525-247 chr7 97572362 97572550 + 5 NA Intergenic Intergenic -159630 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 842-35 chr4 61958147 61958483 + 5 NA intron (NM_001371343, intron 16 of 23) intron (NM_001371343, intron 16 of 23) 203450 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1952-3 chr3 79614970 79615911 + 5 NA intron (NM_002941, intron 1 of 30) MER4B|LTR|ERV1 107553 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 1107-7 chr5 2857492 2857831 + 5 NA Intergenic Intergenic -60193 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 644-48 chr20 19098665 19098907 + 5 NA Intergenic Intergenic -113856 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 461-264 chr8 80361440 80361556 + 5 NA Intergenic Intergenic 120109 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 1832-2 chr3 105131885 105132817 + 5 NA Intergenic Intergenic -234362 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 816-9 chr14 45921130 45921490 + 5 NA Intergenic Intergenic -142849 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1060-25 chr9 87357285 87357806 + 5 NA Intergenic AluYc|SINE|Alu -139683 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 415-30 chr10 76662908 76663065 + 5 NA Intergenic L1MEd|LINE|L1 -225058 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 637-110 chr7 54440842 54441009 + 5 NA Intergenic L1MD1|LINE|L1 -101400 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 760-46 chr3 45144589 45144886 + 5 NA intron (NM_178181, intron 1 of 3) MamRTE1|LINE|RTE-BovB 1641 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 744-55 chr5 30525295 30525510 + 5 NA Intergenic Intergenic 644842 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1543 chr2 98814720 98815260 + 5 NA intron (NM_207362, intron 7 of 9) L1ME1|LINE|L1 -43092 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 1668 chr14 50472268 50472873 + 5 NA intron (NM_198794, intron 9 of 31) intron (NM_198794, intron 9 of 31) 59999 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 733-79 chr8 82510311 82510607 + 5 NA Intergenic Intergenic -401645 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 832-25 chr3 44595173 44595482 + 5 NA 3' UTR (NM_173658, exon 3 of 3) 3' UTR (NM_173658, exon 3 of 3) 10363 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 735-38 chr2 31037206 31037565 + 5 NA intron (NM_024572, intron 1 of 14) L1M4|LINE|L1 92255 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 1060-6 chr11 55898609 55899103 + 5 NA Intergenic L1PA4|LINE|L1 15559 NM_032681 84767 Hs.326734 NM_032681 ENSG00000124900 TRIM51 SPRYD5|TRIM51A tripartite motif-containing 51 protein-coding 1181-13 chr4 55283807 55284301 + 5 NA Intergenic L1MA9|LINE|L1 -62188 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 762-18 chr12 46565517 46565834 + 5 NA intron (NR_125380, intron 3 of 3) L1MA5A|LINE|L1 181568 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 812-6 chr1 233429137 233429435 + 5 NA Intergenic L1M5|LINE|L1 101562 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 1461-2 chr22 30184081 30184598 + 5 NA Intergenic Intergenic -54855 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 519-47 chr12 46743712 46743923 + 5 NA Intergenic L1P4|LINE|L1 82180 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 915-6 chr19 40022992 40023366 + 5 NA Intergenic L1M4|LINE|L1 26119 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 528-215 chr5 164130853 164131023 + 5 NA Intergenic AluJb|SINE|Alu 336464 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 771-15 chr11 75091355 75091671 + 5 NA intron (NM_001005285, intron 1 of 1) L1MEg2|LINE|L1 5377 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 932-3 chr10 127970126 127970468 + 5 NA intron (NM_001316676, intron 2 of 21) intron (NM_001316676, intron 2 of 21) -16983 NM_001316677 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase receptor type E protein-coding 951-28 chr7 56535520 56535930 + 5 NA non-coding (NR_108099, exon 2 of 2) non-coding (NR_108099, exon 2 of 2) 2405 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 1000-12 chr2 107108226 107108619 + 5 NA Intergenic Intergenic -221313 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 760-22 chr16 68571254 68571517 + 5 NA intron (NM_001305204, intron 4 of 4) intron (NM_001305204, intron 4 of 4) 32094 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 888-19 chr19 12207255 12207638 + 5 NA non-coding (NR_104179, exon 2 of 2) non-coding (NR_104179, exon 2 of 2) 12431 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 2222 chr14 43011682 43012487 + 5 NA Intergenic Intergenic 1405228 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 867-35 chr5 8031933 8032289 + 5 NA Intergenic L1MDa|LINE|L1 162963 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 835-22 chr17 66023492 66023892 + 5 NA intron (NM_001353129, intron 16 of 26) L1M2|LINE|L1 168200 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 578-30 chr10 83799538 83799709 + 5 NA Intergenic L1PA15|LINE|L1 -122534 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 884-38 chr5 46251571 46251805 + 5 NA Intergenic ALR/Alpha|Satellite|centr -555308 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1439-2 chr2 12039480 12040086 + 5 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 32667 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 950-13 chr2 116250846 116251228 + 5 NA Intergenic Intergenic 907222 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 619-4 chr1 58211587 58211879 + 5 NA intron (NM_001353980, intron 1 of 5) MIRb|SINE|MIR 38770 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 941-13 chr2 82827003 82827203 + 5 NA Intergenic Intergenic -29700 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 1209-5 chr18 34126977 34127392 + 5 NA intron (NM_001353232, intron 2 of 9) intron (NM_001353232, intron 2 of 9) -78572 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 1047-21 chr8 122691858 122692131 + 5 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 2112 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 981-10 chr15 99941536 99941876 + 5 NA Intergenic L1MA9|LINE|L1 134683 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 822-51 chr6 49184868 49185250 + 5 NA Intergenic Intergenic 278194 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 1275-6 chr3 11123936 11124427 + 5 NA Intergenic L2a|LINE|L2 -13057 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 705-16 chr11 103523199 103523513 + 5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -326550 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 1401-3 chr20 46456257 46456775 + 5 NA TTS (NR_045983) TTS (NR_045983) 1127 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 1144 chr1 215514939 215515216 + 5 NA Intergenic L1MA4|LINE|L1 -52227 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 596-35 chr11 37892434 37892658 + 5 NA Intergenic MSTA|LTR|ERVL-MaLR -46055 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 1386-2 chr15 83759563 83760143 + 5 NA intron (NM_207517, intron 3 of 29) L1MEg|LINE|L1 105730 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 629-112 chr6 40678234 40678444 + 5 NA Intergenic LTR16B2|LTR|ERVL -90975 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 741-81 chr9 110636103 110636289 + 5 NA Intergenic L1MC4|LINE|L1 -32595 NM_001166281 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 962-15 chr3 68741010 68741317 + 5 NA intron (NM_001005527, intron 4 of 5) L1M3|LINE|L1 191384 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 1052-18 chr3 34452313 34452663 + 5 NA Intergenic Intergenic 653858 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 783-11 chr10 33396653 33396903 + 5 NA Intergenic MLT1H|LTR|ERVL-MaLR -61873 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 1190-3 chr2 126331106 126331606 + 5 NA Intergenic L1MB8|LINE|L1 -213371 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 879-31 chr8 103639913 103640236 + 5 NA intron (NM_001348497, intron 1 of 22) L1MD3|LINE|L1 -138164 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 1303-2 chr19 28997374 28998120 + 5 NA Intergenic Intergenic -4808 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 566-38 chr12 90571153 90571370 + 5 NA Intergenic L1MA3|LINE|L1 277943 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 1054-19 chr8 25728908 25729360 + 5 NA Intergenic L1PA14|LINE|L1 269901 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 1252-6 chr5 64485689 64486125 + 5 NA Intergenic L2c|LINE|L2 -20108 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 686-8 chr1 239196255 239196521 + 5 NA Intergenic Intergenic -190180 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 379-271 chr5 99250702 99250872 + 5 NA Intergenic Intergenic -283203 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 903-17 chr17 26667936 26668262 + 5 NA Intergenic ALR/Alpha|Satellite|centr 421142 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 925-34 chr8 77409858 77410214 + 5 NA Intergenic Intergenic -40661 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 934-7 chr10 104986733 104987027 + 5 NA intron (NM_014978, intron 4 of 26) Tigger1|DNA|TcMar-Tigger -320664 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 1005-15 chr4 80914324 80914653 + 5 NA intron (NM_152770, intron 4 of 5) MER20|DNA|hAT-Charlie -116220 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 937-13 chr18 1057022 1057319 + 5 NA Intergenic L1MA9|LINE|L1 -129177 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 1095-11 chr8 4426523 4426844 + 5 NA intron (NM_033225, intron 2 of 69) (TA)n|Simple_repeat|Simple_repeat 568231 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1415-2 chr14 83452289 83452912 + 5 NA Intergenic LTR8B|LTR|ERV1 809968 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1723-2 chr4 64021738 64022359 + 5 NA Intergenic L1M4|LINE|L1 387402 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1455-6 chr5 155155754 155156382 + 5 NA Intergenic MIR|SINE|MIR 142313 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 832-20 chr20 43033078 43033358 + 5 NA intron (NM_133170, intron 1 of 31) L3|LINE|CR1 64475 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 942-7 chr11 78288549 78288918 + 5 NA intron (NM_080491, intron 1 of 9) L1MD|LINE|L1 53147 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 1671-2 chr4 76711 77197 + 5 NA intron (NM_182524, intron 3 of 3) L1M3a|LINE|L1 23633 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 794-11 chr10 116116830 116117033 + 5 NA intron (NM_145793, intron 4 of 8) intron (NM_145793, intron 4 of 8) 77858 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 870-23 chr3 105125660 105125883 + 5 NA Intergenic Intergenic -240942 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 832-36 chr5 85141010 85141259 + 5 NA Intergenic ERVL-E-int|LTR|ERVL -756254 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 931-27 chr7 104319558 104319936 + 5 NA Intergenic Intergenic -8909 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 1477-3 chr19 28144182 28144750 + 5 NA Intergenic Intergenic -350526 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 581-161 chr7 115522863 115523126 + 5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 58447 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 994-5 chr12 84354685 84355208 + 5 NA Intergenic L2|LINE|L2 557853 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 1197-9 chr7 23835605 23835983 + 5 NA Intergenic L2c|LINE|L2 125575 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 1182-6 chr14 47252227 47252707 + 5 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 90779 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 1208-12 chr20 48257100 48257628 + 5 NA Intergenic L1MDa|LINE|L1 -102547 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 1167-2 chr10 43536818 43537248 + 5 NA Intergenic MLT1A-int|LTR|ERVL-MaLR 31426 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 771-46 chr2 204625797 204626085 + 5 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 80466 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1328-4 chr8 65177178 65177604 + 5 NA intron (NR_038901, intron 1 of 3) intron (NR_038901, intron 1 of 3) 2949 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 1084-16 chr5 1261865 1262372 + 5 NA intron (NR_149162, intron 8 of 12) intron (NR_149162, intron 8 of 12) 32929 NM_198253 7015 Hs.492203 NM_198253 ENSG00000164362 TERT CMM9|DKCA2|DKCB4|EST2|PFBMFT1|TCS1|TP2|TRT|hEST2|hTRT telomerase reverse transcriptase protein-coding 2389 chr12 133201377 133202313 + 5 NA intron (NM_152943, intron 6 of 6) intron (NM_152943, intron 6 of 6) 20350 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 986-28 chr5 128933872 128934228 + 5 NA Intergenic Intergenic -31077 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 873-41 chrX 96054432 96054647 + 5 NA Intergenic L1MA1|LINE|L1 283363 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 2191 chr19 27565803 27566630 + 5 NA Intergenic ALR/Alpha|Satellite|centr -227215 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 844-35 chr2 78047096 78047352 + 5 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -41506 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 1530-3 chr4 63986066 63986629 + 5 NA Intergenic L1PB3|LINE|L1 423103 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 612-65 chr2 114241155 114241395 + 5 NA Intergenic Intergenic -201366 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 905-26 chr4 146120615 146120909 + 5 NA intron (NR_038331, intron 1 of 5) L1MC2|LINE|L1 1151 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 957-19 chr3 25991529 25991809 + 5 NA Intergenic L1M4|LINE|L1 -117974 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 943-6 chr12 93219495 93219858 + 5 NA intron (NR_040096, intron 2 of 4) intron (NR_040096, intron 2 of 4) 45310 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 999-5 chr12 22893408 22893811 + 5 NA Intergenic Intergenic 268438 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 867-42 chr7 4320506 4320843 + 5 NA Intergenic L1MB7|LINE|L1 -185837 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 873-14 chr19 48526568 48526899 + 5 NA Intergenic MER58A|DNA|hAT-Charlie -13544 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 1249-2 chr19 29345244 29345877 + 5 NA intron (NR_040029, intron 9 of 9) L1MB3|LINE|L1 -132409 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 838-20 chr2 81141917 81142319 + 5 NA Intergenic L1MA9|LINE|L1 324828 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1842 chr3 80929040 80929842 + 5 NA Intergenic L1ME2z|LINE|L1 -64427 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 1183-10 chr5 150901420 150902002 + 5 NA 3' UTR (NM_001346557, exon 4 of 4) 3' UTR (NM_001346557, exon 4 of 4) 3272 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1053-2 chr10 78648345 78648765 + 5 NA Intergenic L1ME1|LINE|L1 381213 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 1232-7 chr7 54047508 54048172 + 5 NA Intergenic L1M4c|LINE|L1 -235909 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1495 chr1 160534773 160535411 + 5 NA Intergenic L1MB4|LINE|L1 -11837 NM_052931 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 800-48 chr4 83208838 83209081 + 5 NA Intergenic Intergenic 75836 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 812-17 chr12 108203599 108204005 + 5 NA intron (NM_001304447, intron 3 of 9) MLT1K-int|LTR|ERVL-MaLR 72016 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 541-112 chr2 53754313 53754523 + 5 NA intron (NM_145863, intron 1 of 8) intron (NM_145863, intron 1 of 8) -13365 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 1488 chr2 71724476 71725024 + 5 NA Intergenic HAL1|LINE|L1 258051 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 2092 chr12 133053317 133054264 + 5 NA intron (NM_001127372, intron 4 of 4) L2|LINE|L2 16208 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 1073-17 chr9 78100211 78100713 + 5 NA Intergenic MIR|SINE|MIR -68651 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 872-16 chr14 70562842 70563118 + 5 NA Intergenic L1M5|LINE|L1 -27976 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 872-17 chr14 71949256 71949739 + 5 NA intron (NM_001370288, intron 1 of 16) L1ME3A|LINE|L1 15970 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 1126-7 chr2 89827915 89828481 + 5 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -190291 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 636-13 chr10 13817351 13817626 + 5 NA intron (NM_001318336, intron 2 of 23) THE1B|LTR|ERVL-MaLR -109921 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 1223-10 chr3 108106384 108106741 + 5 NA Intergenic MER20B|DNA|hAT-Charlie -15474 NM_001777 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 647-78 chr5 17396264 17396503 + 5 NA Intergenic L1MD3|LINE|L1 -7636 NR_134275 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 810-36 chr4 38645050 38645415 + 5 NA intron (NR_026804, intron 1 of 7) intron (NR_026804, intron 1 of 7) -18967 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 588-37 chr14 49264440 49264711 + 5 NA Intergenic MER33|DNA|hAT-Charlie 321805 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 1018-3 chr1 99952394 99952879 + 5 NA Intergenic MER92-int|LTR|ERV1 -17360 NM_012243 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 812-7 chr10 42917280 42917641 + 5 NA Intergenic Intergenic 45939 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 1059-14 chr8 123999989 124000551 + 5 NA intron (NM_001039112, intron 12 of 40) L1M1|LINE|L1 40512 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 745-32 chr2 209241514 209241793 + 5 NA Intergenic L1MB1|LINE|L1 -182394 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 871-22 chr4 35980464 35980735 + 5 NA Intergenic Intergenic 263340 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 2123 chr16 68561146 68561859 + 5 NA intron (NM_001305204, intron 4 of 4) intron (NM_001305204, intron 4 of 4) 22211 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 948-12 chr14 49320327 49320645 + 5 NA Intergenic MamGypLTR1b|LTR|Gypsy 265894 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 1143-11 chr3 103649722 103650002 + 5 NA Intergenic Intergenic -125746 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 1287-3 chr2 226519137 226519537 + 5 NA Intergenic AluSx1|SINE|Alu 139456 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 1486-5 chrX 47980501 47981001 + 5 NA intron (NM_006962, intron 6 of 6) L1MC5|LINE|L1 23238 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 973-6 chr11 115819821 115820169 + 5 NA Intergenic LTR16A|LTR|ERVL -59795 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 1375-7 chr3 95767941 95768406 + 5 NA Intergenic Intergenic -84980 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 731-8 chr1 247166161 247166362 + 5 NA intron (NM_003431, intron 1 of 3) L1PA14|LINE|L1 5756 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 951-21 chr4 32648425 32649010 + 5 NA Intergenic AluSz|SINE|Alu 297679 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 819-35 chr9 27236819 27237119 + 5 NA Intergenic L1MA8|LINE|L1 45824 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 651-116 chr8 81865635 81865885 + 5 NA Intergenic L1PA16|LINE|L1 -23474 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 840-27 chr2 103864758 103865162 + 5 NA Intergenic MIRb|SINE|MIR 543372 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 1259-4 chr17 78642546 78643163 + 5 NA Intergenic (ATATTAT)n|Simple_repeat|Simple_repeat -10797 NR_110848 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 1390 chr22 29003894 29004284 + 5 NA intron (NM_001206998, intron 2 of 8) intron (NM_001206998, intron 2 of 8) 27387 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 1373-4 chr18 33149282 33149759 + 5 NA intron (NM_001308126, intron 20 of 23) HAL1|LINE|L1 291051 NM_001371121 696-75 chr3 118041437 118041744 + 5 NA Intergenic L1MA9|LINE|L1 -350665 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 779-31 chr2 46711841 46712170 + 5 NA intron (NM_144949, intron 1 of 1) L1ME2|LINE|L1 12710 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 1087-14 chr5 53172010 53172296 + 5 NA Intergenic Intergenic 62311 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 988-40 chr8 136960799 136961200 + 5 NA Intergenic LTR48|LTR|ERV1 430201 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 769-47 chr5 3918989 3919388 + 5 NA Intergenic Intergenic 323356 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 2487 chr5 2877923 2879184 + 5 NA Intergenic Intergenic -39301 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 962-14 chr3 44714779 44715046 + 5 NA intron (NM_033210, intron 2 of 3) intron (NM_033210, intron 2 of 3) 2252 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 1083-8 chr19 36709767 36710221 + 5 NA intron (NM_001363651, intron 1 of 4) L1M4a2|LINE|L1 6313 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 2149 chr6 156612260 156613152 + 5 NA Intergenic L1MEd|LINE|L1 -165149 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 1671-3 chr6 63886086 63886602 + 5 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 79508 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 808-21 chr16 77935812 77936041 + 5 NA intron (NM_020927, intron 7 of 8) MIRb|SINE|MIR -86622 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 936-29 chr6 151593522 151593859 + 5 NA intron (NM_025059, intron 8 of 10) MLT1J|LTR|ERVL-MaLR -96806 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 1042-15 chr8 141483721 141484228 + 5 NA intron (NR_102364, intron 6 of 26) L1ME2|LINE|L1 23255 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 1238-2 chr1 112208466 112208940 + 5 NA Intergenic L1MEd|LINE|L1 -187511 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 910-12 chr13 64340986 64341282 + 5 NA Intergenic Intergenic -265123 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 1221-6 chr7 51098311 51098846 + 5 NA intron (NM_015198, intron 6 of 12) L1MB2|LINE|L1 218231 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 1512-2 chr12 19883056 19883697 + 5 NA Intergenic Intergenic -131309 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 676-110 chr8 129344101 129344361 + 5 NA Intergenic MIRb|SINE|MIR -102991 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 861-34 chr8 122261359 122261624 + 5 NA Intergenic LTR81C|LTR|Gypsy 307153 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 673-112 chr7 104400621 104400865 + 5 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 72087 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 767-9 chr11 85062213 85062406 + 5 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -138888 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 1138-6 chr11 112442795 112443237 + 5 NA Intergenic L1M3|LINE|L1 -39216 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 979-21 chr8 72463028 72463330 + 5 NA Intergenic Intergenic -74046 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 1085-17 chr7 10381085 10381489 + 5 NA Intergenic L1MA8|LINE|L1 -321389 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 799-4 chr1 185905676 185905906 + 5 NA intron (NM_031935, intron 4 of 106) intron (NM_031935, intron 4 of 106) 171400 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 2467 chr12 31558604 31559687 + 5 NA intron (NM_001308339, intron 1 of 22) intron (NM_001308339, intron 1 of 22) -30778 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 723-42 chr2 168640589 168640819 + 5 NA intron (NM_001256126, intron 4 of 10) L2c|LINE|L2 57761 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 669-113 chr8 57398965 57399199 + 5 NA Intergenic LTR86B1|LTR|ERVL 55295 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 1437-3 chr8 120393274 120393836 + 5 NA Intergenic Intergenic 51595 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 1020-11 chr2 230228332 230228769 + 5 NA intron (NM_001278453, intron 1 of 23) L1MCb|LINE|L1 2814 NM_007237 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 749-90 chr8 78056988 78057323 + 5 NA Intergenic Charlie1|DNA|hAT-Charlie -459185 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 747-40 chr21 19285562 19285793 + 5 NA Intergenic L1MEd|LINE|L1 -525865 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 1363-3 chr5 15378283 15379023 + 5 NA Intergenic L1MA7|LINE|L1 -112093 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 734-4 chr1 165310714 165310964 + 5 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 45402 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 1375-8 chr6 154255317 154255879 + 5 NA intron (NM_001130699, intron 4 of 12) L1MEi|LINE|L1 74483 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 1406-3 chr6 148058361 148059095 + 5 NA Intergenic L1PA11|LINE|L1 -213600 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 629-73 chr20 13272534 13272674 + 5 NA intron (NM_080826, intron 2 of 5) intron (NM_080826, intron 2 of 5) -32917 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 1170-3 chr3 77993242 77993745 + 5 NA Intergenic MER4B-int|LTR|ERV1 55470 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 1202-4 chr17 71923489 71923938 + 5 NA Intergenic Intergenic 102266 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 972-2 chr1 215342064 215342358 + 5 NA Intergenic Intergenic -225093 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 1431-4 chr5 12305399 12306017 + 5 NA Intergenic L1MA5|LINE|L1 -269149 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 1832 chr15 98475937 98476523 + 5 NA intron (NM_182562, intron 4 of 6) L1M4a1|LINE|L1 38106 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 1631-2 chr2 225709842 225710638 + 5 NA Intergenic LTR41B|LTR|ERVL 309354 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 535-186 chr4 103838055 103838375 + 5 NA Intergenic Intergenic -118230 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 787-45 chr7 16350295 16350598 + 5 NA intron (NM_001101417, intron 2 of 8) L1M3de|LINE|L1 71092 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 893-23 chr16 68574441 68574706 + 5 NA intron (NM_001305204, intron 4 of 4) intron (NM_001305204, intron 4 of 4) 35282 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 1466-7 chr6 140410152 140410813 + 5 NA Intergenic L1M4c|LINE|L1 205230 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 1320-2 chr10 82015290 82015778 + 5 NA intron (NR_163253, intron 2 of 10) THE1C|LTR|ERVL-MaLR 137847 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 1256-3 chr16 10272682 10273159 + 5 NA Intergenic Intergenic -90012 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 665-94 chr7 62839439 62839623 + 5 NA Intergenic ALR/Alpha|Satellite|centr 464525 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1408-9 chr8 88660721 88661183 + 5 NA Intergenic L1MEi|LINE|L1 -333469 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 874-37 chr9 103779828 103780184 + 5 NA Intergenic MIRb|SINE|MIR -219703 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 1143-5 chr15 59565458 59565968 + 5 NA Intergenic MER63A|DNA|hAT-Blackjack -46070 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 1691 chr14 22324808 22325313 + 5 NA Intergenic Intergenic 107693 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 808-59 chr8 134482280 134482596 + 5 NA intron (NM_001174158, intron 13 of 13) intron (NM_001174158, intron 13 of 13) -115633 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1934 chr19 29346176 29347039 + 5 NA intron (NR_040029, intron 9 of 9) L1MB3|LINE|L1 -133456 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 958-2 chr1 159610346 159610917 + 5 NA Intergenic MIRb|SINE|MIR 22805 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 883-8 chr14 85054997 85055248 + 5 NA Intergenic THE1C|LTR|ERVL-MaLR -216810 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 1529 chr7 397718 398273 + 5 NA Intergenic L1M4a2|LINE|L1 18570 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 942-31 chr5 12839304 12839719 + 5 NA Intergenic Intergenic 171652 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 1087-23 chr9 79910279 79910685 + 5 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) -64541 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 950-4 chr1 172195348 172195821 + 5 NA intron (NR_146559, intron 15 of 20) L1MC|LINE|L1 -50749 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 813-43 chr7 109820603 109820960 + 5 NA Intergenic L1M4a1|LINE|L1 139432 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 1261 chr11 114602754 114603155 + 5 NA Intergenic (AATATAT)n|Simple_repeat|Simple_repeat -7168 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 1233-2 chr11 5519723 5519992 + 5 NA intron (NR_133006, intron 2 of 2) intron (NR_133006, intron 2 of 2) 1928 NR_133006 101927763 NR_133006 OLFM5P - olfactomedin family member 5, pseudogene pseudo 1153-8 chr2 46713430 46713835 + 5 NA intron (NM_144949, intron 1 of 1) L1ME2|LINE|L1 14337 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 923-26 chr8 84306794 84307159 + 5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -108508 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1436 chr12 2464128 2464785 + 5 NA intron (NM_199460, intron 5 of 49).2 intron (NM_199460, intron 5 of 49).2 194680 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 820-36 chr3 57027045 57027306 + 5 NA intron (NM_001128615, intron 2 of 12) MIR|SINE|MIR -33489 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 780-5 chr1 184007285 184007469 + 5 NA intron (NM_001303421, intron 1 of 11) Kanga1a|DNA|TcMar-Tc2 30351 NM_001303421 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 936-26 chr5 122054 122396 + 5 NA intron (NM_052909, intron 2 of 19) L1MB3|LINE|L1 30057 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 727-43 chr19 30814006 30814226 + 5 NA Intergenic L2|LINE|L2 -353394 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 1228-4 chr2 17406136 17406455 + 5 NA Intergenic L1MA5A|LINE|L1 112145 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 2301 chr9 31964614 31965442 + 5 NA Intergenic L1PA11|LINE|L1 -419575 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 792-31 chr2 48885180 48885417 + 5 NA Intergenic Intergenic -129574 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 1262-10 chr8 109980847 109981264 + 5 NA Intergenic Intergenic -5284 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 656-88 chr5 3649357 3649752 + 5 NA Intergenic Intergenic 53722 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 962-10 chr19 52609992 52610318 + 5 NA Intergenic Intergenic 13471 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 825-21 chr2 160637922 160638287 + 5 NA Intergenic Intergenic -144297 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 549-49 chr12 101611416 101611606 + 5 NA intron (NM_001254722, intron 1 of 27) intron (NM_001254722, intron 1 of 27) 16540 NM_002465 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 1457-2 chr14 62563358 62564028 + 5 NA Intergenic Intergenic -423720 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 811-42 chr6 54777279 54777549 + 5 NA Intergenic MER4D|LTR|ERV1 -69357 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 1466 chr10 29117536 29117994 + 5 NA Intergenic L1MA9|LINE|L1 -171305 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 1185-2 chr19 40019375 40019925 + 5 NA 3' UTR (NM_001297763, exon 7 of 7) 3' UTR (NM_001297763, exon 7 of 7) 22590 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 902-30 chr5 26824721 26824963 + 5 NA Intergenic Intergenic 213744 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1089-16 chr8 75804569 75805187 + 5 NA Intergenic Intergenic 264910 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 1319-6 chr4 102038083 102038631 + 5 NA intron (NM_017935, intron 10 of 16) intron (NM_017935, intron 10 of 16) 224515 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 622-61 chr2 76644279 76644500 + 5 NA Intergenic L1MB5|LINE|L1 -341576 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 1302-7 chr8 131749401 131749957 + 5 NA Intergenic MIRb|SINE|MIR -154414 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 922-39 chr8 133824612 133825050 + 5 NA Intergenic MIR3|SINE|MIR -47479 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 974-21 chr9 25965840 25966087 + 5 NA Intergenic L1M2|LINE|L1 -100712 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 760-68 chr6 72895683 72895974 + 5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 71925 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 469-199 chr4 63010623 63010750 + 5 NA Intergenic MER57A-int|LTR|ERV1 -848921 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 2326-2 chr8 129222955 129224252 + 5 NA intron (NR_033916, intron 1 of 2) Tigger5b|DNA|TcMar-Tigger 17637 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 499-189 chr4 124687769 124687953 + 5 NA intron (NM_001167882, intron 1 of 3) L1ME1|LINE|L1 24871 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 1286-2 chr1 222425606 222426058 + 5 NA Intergenic MIRc|SINE|MIR 122272 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 722-54 chr4 18211063 18211390 + 5 NA Intergenic L1PA15|LINE|L1 -189351 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 907-14 chr21 29733656 29734089 + 5 NA intron (NM_000830, intron 1 of 16) MER63D|DNA|hAT-Blackjack -14303 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 701-4 chr1 238380168 238380390 + 5 NA Intergenic Intergenic 105738 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 960-11 chr15 83220074 83220490 + 5 NA Intergenic L1MEg|LINE|L1 -12459 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 743-43 chr2 128926433 128926652 + 5 NA Intergenic L1MC3|LINE|L1 61942 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 768-16 chr13 84087085 84087354 + 5 NA Intergenic Intergenic -53383 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 849-18 chr16 88844824 88845089 + 5 NA intron (NM_001323544, intron 1 of 14) MER58B|DNA|hAT-Charlie -11264 NR_134671 51693 Hs.461722 NM_016209 ENSG00000167515 TRAPPC2L HSPC176|PERRB trafficking protein particle complex 2 like protein-coding 814-20 chr14 22423993 22424335 + 5 NA intron (NR_148364, intron 1 of 1) intron (NR_148364, intron 1 of 1) 8589 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 1142-4 chr3 191865801 191866073 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -372693 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 745-19 chr17 69793194 69793409 + 5 NA intron (NR_109972, intron 3 of 4) MSTA|LTR|ERVL-MaLR -168406 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 1459-2 chr11 98427494 98428103 + 5 NA Intergenic L1MA8|LINE|L1 -593151 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 1085-10 chr2 113733041 113733405 + 5 NA intron (NM_001330316, intron 9 of 14) MER58A|DNA|hAT-Charlie -11855 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 1193-4 chr17 52263760 52264091 + 5 NA Intergenic Intergenic -103908 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 1021-10 chr3 31235025 31235408 + 5 NA Intergenic Intergenic -73429 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 1106-7 chr20 3494703 3495208 + 5 NA intron (NM_001323332, intron 1 of 25) intron (NM_001323332, intron 1 of 25) 23937 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 523-259 chr8 20713663 20713877 + 5 NA Intergenic L1ME1|LINE|L1 -98844 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 1384-2 chr12 117559434 117559739 + 5 NA intron (NM_173598, intron 7 of 19) intron (NM_173598, intron 7 of 19) -197784 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 1339-3 chr18 13960161 13960871 + 5 NA Intergenic L1MCa|LINE|L1 -44809 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 1143-14 chr5 54954493 54954957 + 5 NA Intergenic L1MEi|LINE|L1 30868 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 892-35 chr7 45525454 45525691 + 5 NA Intergenic Intergenic -48568 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 1717-2 chr19 24384134 24384692 + 5 NA Intergenic ALR/Alpha|Satellite|centr -220966 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1453 chr11 37693840 37694308 + 5 NA Intergenic MER63A|DNA|hAT-Blackjack -244527 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 1240-5 chr7 26870137 26870792 + 5 NA Intergenic Intergenic -5874 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 988-9 chr15 61397129 61397638 + 5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -168081 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 1690 chr14 67197535 67198451 + 5 NA intron (NM_173526, intron 2 of 8) L2a|LINE|L2 8553 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 813-36 chr6 124643907 124644198 + 5 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) -318493 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 1153-14 chr7 123451096 123451724 + 5 NA TTS (NM_178827) TTS (NM_178827) 81538 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 1052-23 chr8 133310473 133310836 + 5 NA Intergenic MER65-int|LTR|ERV1 -13350 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 1670-2 chr8 59220061 59220847 + 5 NA Intergenic L1MEc|LINE|L1 101244 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 1348-6 chr4 42264774 42265341 + 5 NA Intergenic MER5A|DNA|hAT-Charlie -112402 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 656-130 chr8 119259276 119259487 + 5 NA Intergenic L2a|LINE|L2 -12524 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 805-45 chr7 54555803 54556140 + 5 NA promoter-TSS (NR_038994) promoter-TSS (NR_038994) -999 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 2044 chr8 82281331 82282190 + 5 NA Intergenic L1MEg|LINE|L1 -439474 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 809-9 chr14 33730806 33731070 + 5 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) 22001 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 1706 chr7 1794390 1795276 + 5 NA Intergenic L1ME3A|LINE|L1 49420 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 1383-6 chr7 62596869 62597457 + 5 NA Intergenic ALR/Alpha|Satellite|centr 706893 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 732-27 chr14 48828968 48829200 + 5 NA Intergenic Intergenic 757296 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 799-29 chr2 79088984 79089240 + 5 NA Intergenic Intergenic -1119 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 804-25 chr16 79710825 79711004 + 5 NA Intergenic L2c|LINE|L2 -59557 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 997-19 chr20 59996913 59997245 + 5 NA intron (NM_177980, intron 13 of 17) MER20|DNA|hAT-Charlie 705 NM_001348204 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 1073-14 chr5 6065892 6066267 + 5 NA Intergenic Intergenic 271213 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 1243 chr13 70236284 70236771 + 5 NA Intergenic Intergenic -128034 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 729-29 chr17 5183501 5183784 + 5 NA exon (NM_032530, exon 2 of 2) exon (NM_032530, exon 2 of 2) 8226 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 1386-3 chr18 6677287 6677675 + 5 NA Intergenic MSTB1|LTR|ERVL-MaLR -52235 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 1073 chr1 182346436 182346892 + 5 NA Intergenic AluJr4|SINE|Alu -32603 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 810-26 chr2 219859336 219859696 + 5 NA Intergenic L1MC4|LINE|L1 45373 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 974-13 chr4 74850 75153 + 5 NA intron (NM_182524, intron 3 of 3) L1M3a|LINE|L1 21680 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 783 chr1 37058000 37058303 + 5 NA Intergenic Intergenic -23636 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 1173-7 chr2 181140772 181141258 + 5 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 17178 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 1676-3 chr7 62760922 62761417 + 5 NA Intergenic ALR/Alpha|Satellite|centr 542887 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 856-36 chr4 161032380 161032780 + 5 NA Intergenic Intergenic -990153 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 653-17 chr10 63834339 63834572 + 5 NA Intergenic MER90a|LTR|ERV1 -312565 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 577-148 chr5 42701642 42701814 + 5 NA intron (NM_001242403, intron 6 of 9) Charlie1a|DNA|hAT-Charlie -55090 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 671-113 chrX 121743778 121743945 + 5 NA Intergenic Intergenic 372889 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 934-11 chr12 26762762 26763224 + 5 NA intron (NM_002223, intron 2 of 56) L1MA9|LINE|L1 70201 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 792-50 chr5 135538670 135538840 + 5 NA Intergenic L2b|LINE|L2 -2791 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 824-46 chr8 52802357 52802569 + 5 NA Intergenic MLT1B|LTR|ERVL-MaLR -87997 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 787-20 chr2 134613918 134614195 + 5 NA intron (NM_030923, intron 2 of 7) L1M4|LINE|L1 104944 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 459-319 chr8 139532648 139532803 + 5 NA Intergenic Intergenic 170398 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 639-110 chr7 84414808 84415073 + 5 NA Intergenic LTR37B|LTR|ERV1 -117536 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 834-37 chr5 170399431 170399652 + 5 NA intron (NR_109899, intron 1 of 2) L1ME4a|LINE|L1 10048 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 1206-13 chr9 11785557 11785980 + 5 NA Intergenic Intergenic -907617 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 958-22 chr6 152023174 152023616 + 5 NA intron (NM_001122741, intron 6 of 8) L1MC5a|LINE|L1 144892 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 1012-5 chr16 72423880 72424357 + 5 NA TTS (NR_159371) TTS (NR_159371) 240852 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 1315 chr11 54779650 54780237 + 5 NA Intergenic ALR/Alpha|Satellite|centr 73111 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 776-7 chr10 31676540 31676740 + 5 NA Intergenic L2b|LINE|L2 232286 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 556-113 chr2 185101678 185101912 + 5 NA Intergenic Intergenic 65277 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 977-5 chr16 76899410 76899930 + 5 NA Intergenic Intergenic 30734 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 1600 chr18 51022963 51023521 + 5 NA Intergenic Intergenic -6971 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 1111-12 chr6 140432606 140432982 + 5 NA Intergenic L1MCa|LINE|L1 227542 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 360-87 chr12 45606055 45606202 + 5 NA Intergenic MIRb|SINE|MIR 121793 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 1977 chr8 126266005 126267006 + 5 NA Intergenic L1M5|LINE|L1 -58990 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 641-5 chr1 169601744 169602016 + 5 NA intron (NM_003005, intron 10 of 16) MIRb|SINE|MIR -15349 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 751-2 chr1 65556261 65556495 + 5 NA intron (NM_001198687, intron 1 of 18) intron (NM_001198687, intron 1 of 18) 30689 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 779-39 chr3 122234495 122234680 + 5 NA intron (NM_001178065, intron 1 of 6) intron (NM_001178065, intron 1 of 6) 50260 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 1473 chr20 31075159 31075696 + 5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -182237 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 1407-4 chr3 73149333 73149855 + 5 NA Intergenic AluSz|SINE|Alu 87935 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 764-64 chr7 25961331 25961632 + 5 NA Intergenic Intergenic -11495 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 1130-3 chr12 20229450 20229932 + 5 NA Intergenic Intergenic -101790 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 894-11 chr14 49391096 49391499 + 5 NA Intergenic L1PA15|LINE|L1 195083 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 801-34 chr3 147955633 147955855 + 5 NA Intergenic L1M5|LINE|L1 -122415 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 844-45 chr3 74438960 74439248 + 5 NA intron (NM_020872, intron 3 of 21) intron (NM_020872, intron 3 of 21) 82036 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 914-15 chr2 107628475 107628845 + 5 NA Intergenic L1MC3|LINE|L1 99241 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 965-17 chr5 174126817 174127152 + 5 NA Intergenic Intergenic 81278 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 1156 chr1 179459426 179459719 + 5 NA intron (NM_144696, intron 16 of 25) L1MB8|LINE|L1 93528 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 936-2 chr1 40895205 40895580 + 5 NA Intergenic THE1D|LTR|ERVL-MaLR -33029 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 818-2 chr1 162414626 162414891 + 5 NA Intergenic L1MC5a|LINE|L1 -2622 NM_053282 117157 Hs.350581 NM_053282 ENSG00000198574 SH2D1B EAT2 SH2 domain containing 1B protein-coding 1487 chr1 24975416 24976101 + 5 NA Intergenic HAL1|LINE|L1 -10748 NM_001031680 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC RUNX family transcription factor 3 protein-coding 1145-5 chr2 177857449 177857930 + 5 NA intron (NM_001077197, intron 6 of 20) L1MB7|LINE|L1 31067 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 765-42 chr3 96721215 96721389 + 5 NA Intergenic Intergenic -93292 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 620-144 chr8 87799512 87799716 + 5 NA Intergenic L1MB3|LINE|L1 74401 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 683-31 chr18 1023005 1023226 + 5 NA Intergenic Intergenic -95122 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 3098 chr2 79333487 79334945 + 5 NA Intergenic L1MA5|LINE|L1 166628 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 531-263 chr9 75089725 75089892 + 5 NA intron (NM_012383, intron 1 of 9) intron (NM_012383, intron 1 of 9) 1294 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 1508-4 chr7 20488521 20489208 + 5 NA Intergenic L1M2|LINE|L1 -126803 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 836-47 chr5 31128979 31129240 + 5 NA Intergenic LTR78|LTR|ERV1 -64577 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 837-18 chr2 95211168 95211450 + 5 NA Intergenic Intergenic 45500 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 903-3 chr10 67159937 67160174 + 5 NA intron (NM_001127384, intron 7 of 17) L1MB1|LINE|L1 147789 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 1007-11 chr4 136230076 136230496 + 5 NA Intergenic Intergenic -316606 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 714-42 chr2 198975122 198975403 + 5 NA Intergenic L1PB3|LINE|L1 482677 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 1020-7 chr18 1187954 1188456 + 5 NA Intergenic L2a|LINE|L2 171424 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1152-5 chr3 5470727 5471149 + 5 NA Intergenic Intergenic -220683 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 1286-8 chr5 97904255 97904790 + 5 NA intron (NR_146299, intron 2 of 2) MER70C|LTR|ERVL 63764 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 454-281 chr6 168199963 168200115 + 5 NA Intergenic MER4D1|LTR|ERV1 26478 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 755-27 chr15 92533725 92533908 + 5 NA Intergenic Charlie29a|DNA|hAT-Charlie 38447 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 1359-5 chr8 79178483 79179147 + 5 NA Intergenic Intergenic -153373 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 829-42 chr7 83630752 83631158 + 5 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 10476 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 845-35 chr6 151560070 151560327 + 5 NA intron (NM_025059, intron 5 of 10) L1PA17|LINE|L1 66181 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 816-44 chr7 4315242 4315573 + 5 NA Intergenic L1MB8|LINE|L1 -180570 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 902-16 chr18 13598524 13598880 + 5 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -12412 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 1210-8 chr6 61494075 61494725 + 5 NA Intergenic ALR/Alpha|Satellite|centr -79730 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 1108-4 chr11 46168443 46168834 + 5 NA Intergenic L1M5|LINE|L1 -3317 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 930-21 chr22 33865476 33865813 + 5 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 54784 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 1106-4 chr14 53224357 53224850 + 5 NA Intergenic L1MA5A|LINE|L1 71249 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 806-4 chr10 43894684 43894985 + 5 NA intron (NR_038268, intron 4 of 4) L2|LINE|L2 -14462 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 885-13 chr20 31270730 31271012 + 5 NA Intergenic L1M2|LINE|L1 13207 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 1437-2 chr5 153610134 153610552 + 5 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 118171 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 1165-6 chr17 60473270 60473604 + 5 NA intron (NM_006380, intron 4 of 12) Kanga2_a|DNA|TcMar-Tc2 50948 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 920-4 chr10 71946252 71946626 + 5 NA Intergenic LTR2|LTR|ERV1 -17956 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 1267-9 chr9 129295249 129295686 + 5 NA Intergenic L1MDa|LINE|L1 13051 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 834-31 chr3 187421579 187421883 + 5 NA Intergenic L1PA17|LINE|L1 -25315 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 717-63 chr4 91991173 91991371 + 5 NA Intergenic L1MB7|LINE|L1 286030 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 704-5 chr1 112111054 112111394 + 5 NA Intergenic MIRc|SINE|MIR 120688 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 1037-17 chr8 50573677 50574059 + 5 NA intron (NR_135797, intron 13 of 20) intron (NR_135797, intron 13 of 20) 409737 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 1077-14 chr6 63295826 63296179 + 5 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 23975 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 1157-5 chr15 48025528 48025913 + 5 NA Intergenic Intergenic -95270 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 1219 chr1 30481243 30481646 + 5 NA Intergenic Intergenic -237328 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 1364-8 chr8 129100122 129100738 + 5 NA Intergenic L2c|LINE|L2 -134429 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 2884 chr20 46543700 46545084 + 5 NA intron (NM_080721, intron 2 of 2) MER112|DNA|hAT-Charlie 6262 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 579-189 chrX 147618078 147618267 + 5 NA Intergenic Intergenic 293645 NR_024503 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 651-89 chr4 42187177 42187437 + 5 NA Intergenic Intergenic -34652 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 496-93 chr14 85452452 85452714 + 5 NA Intergenic Intergenic 58668 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 863-19 chr2 77024594 77024834 + 5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 38749 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 1055-7 chr19 57473864 57474313 + 5 NA exon (NM_001330613, exon 3 of 3) exon (NM_001330613, exon 3 of 3) 3478 NM_001330613 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 863-30 chr4 30507823 30508058 + 5 NA Intergenic ERVL-B4-int|LTR|ERVL -212429 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1088-6 chr19 36708981 36709477 + 5 NA intron (NM_001363651, intron 1 of 4) MER58B|DNA|hAT-Charlie 5548 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 917-12 chr2 40614127 40614476 + 5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -101866 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 755-57 chr6 62498719 62499038 + 5 NA Intergenic Intergenic -212651 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 668-91 chr6 124677763 124677983 + 5 NA intron (NM_001040214, intron 4 of 6) L1MB1|LINE|L1 -284672 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 478-181 chr3 39621578 39621683 + 5 NA Intergenic L1MEg|LINE|L1 119564 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 1542 chr10 59977361 59977909 + 5 NA Intergenic L1MC4|LINE|L1 -16722 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 464-81 chr16 5659944 5660103 + 5 NA Intergenic Charlie4a|DNA|hAT-Charlie 27556 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 886-26 chr4 126934483 126934892 + 5 NA Intergenic Intergenic -698270 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 617-87 chr3 86126071 86126254 + 5 NA Intergenic Intergenic -298112 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 1569 chr21 28369336 28370000 + 5 NA Intergenic L1MA3|LINE|L1 -141001 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 1521-6 chr3 193755711 193756246 + 5 NA Intergenic L1MEf|LINE|L1 88031 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 753-33 chr2 48895736 48896021 + 5 NA Intergenic Intergenic -140154 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 527-198 chr4 142907963 142908109 + 5 NA Intergenic L1MA4|LINE|L1 -61501 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 936-25 chr4 123668230 123668588 + 5 NA intron (NR_027105, intron 3 of 5) MER110-int|LTR|ERV1 18418 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 771-47 chr2 211546090 211546297 + 5 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 880167 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 1478-2 chr7 103852227 103852757 + 5 NA intron (NM_005045, intron 2 of 64) MIR|SINE|MIR 137024 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 517-259 chr8 56350605 56350750 + 5 NA Intergenic L1PA15|LINE|L1 -29901 NM_001318050 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 1074-14 chr5 26917006 26917614 + 5 NA intron (NM_016279, intron 2 of 11) L1MA7|LINE|L1 121276 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1402-4 chr20 42854090 42854630 + 5 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -114383 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 629-102 chr5 128608379 128608560 + 5 NA Intergenic L1MA3|LINE|L1 -70224 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 701-105 chr9 103119273 103119496 + 5 NA Intergenic THE1C|LTR|ERVL-MaLR 124051 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 840-39 chr4 100472776 100473050 + 5 NA intron (NM_001159694, intron 3 of 10) HSMAR1|DNA|TcMar-Mariner 45109 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 1420-2 chr19 15667714 15668391 + 5 NA Intergenic (ATGTCT)n|Simple_repeat|Simple_repeat -5035 NM_023944 66002 Hs.131459 NM_023944 ENSG00000186204 CYP4F12 CYPIVF12|F22329_1 cytochrome P450 family 4 subfamily F member 12 protein-coding 1803 chr17 77704815 77705824 + 5 NA Intergenic Intergenic 23240 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 749-70 chr4 49651361 49651594 + 5 NA Intergenic (GAATG)n|Satellite|Satellite 664835 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1260-2 chr17 52986930 52987310 + 5 NA intron (NM_001243552, intron 3 of 3) intron (NM_001243552, intron 3 of 3) 1615 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 560-44 chr13 84203857 84204125 + 5 NA intron (NR_046871, intron 1 of 6) intron (NR_046871, intron 1 of 6) 63389 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 1621-3 chr5 7368411 7369037 + 5 NA Intergenic Intergenic -20747 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 750-29 chr19 58195278 58195572 + 5 NA intron (NM_133502, intron 4 of 7) intron (NM_133502, intron 4 of 7) 12364 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 774-52 chr20 62077636 62077926 + 5 NA Intergenic L1MA7|LINE|L1 -11971 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 1122-2 chr10 29721452 29721819 + 5 NA intron (NM_001323599, intron 1 of 38) L1MEc|LINE|L1 14166 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 786-24 chr15 79238870 79239058 + 5 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) 29176 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 976-5 chr10 73314260 73314585 + 5 NA intron (NM_001367801, intron 10 of 27) MER104|DNA|TcMar-Tc2 44332 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 1359-4 chr3 105973861 105974436 + 5 NA Intergenic Intergenic -104747 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 843-22 chr2 81792029 81792489 + 5 NA Intergenic Intergenic -325313 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 611-56 chr16 80659642 80659971 + 5 NA intron (NM_152342, intron 2 of 6) intron (NM_152342, intron 2 of 6) -86998 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 836-60 chr8 93295873 93296170 + 5 NA Intergenic Intergenic -129171 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 1477-6 chr4 37024205 37024724 + 5 NA Intergenic MIR|SINE|MIR 22685 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 869-13 chr11 41978795 41979043 + 5 NA Intergenic MER47A|DNA|TcMar-Tigger 106539 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 1185-9 chr8 89077634 89077977 + 5 NA Intergenic Intergenic 679906 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 860-42 chr5 162608612 162608918 + 5 NA Intergenic Intergenic 541123 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 1052-20 chr7 5097850 5098253 + 5 NA Intergenic AluSq2|SINE|Alu 25991 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 763-28 chr2 52299038 52299248 + 5 NA intron (NR_135237, intron 7 of 10) Tigger1|DNA|TcMar-Tigger -71505 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 855-27 chr2 79534033 79534364 + 5 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 11015 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 934-31 chr8 114980894 114981199 + 5 NA Intergenic Intergenic 686967 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 653-105 chr6 76810440 76810665 + 5 NA Intergenic LTR1B1|LTR|ERV1 -216929 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 1489-3 chr11 37393370 37394062 + 5 NA Intergenic L1M4a1|LINE|L1 -544885 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 770-40 chr2 125058103 125058352 + 5 NA Intergenic Intergenic 1032940 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 873-26 chr4 49101477 49101736 + 5 NA Intergenic (CATTC)n|Satellite|Satellite 114964 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 916-29 chr5 150923974 150924332 + 5 NA Intergenic L1M3b|LINE|L1 -19170 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 352-172 chr16 67243295 67243413 + 5 NA intron (NM_013241, intron 1 of 21) intron (NM_013241, intron 1 of 21) 4127 NM_001318202 29109 Hs.95231 NM_013241 ENSG00000135723 FHOD1 FHOS formin homology 2 domain containing 1 protein-coding 848-23 chr2 123006568 123006870 + 5 NA Intergenic L1M2|LINE|L1 66762 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 759-2 chr1 68726802 68727001 + 5 NA Intergenic Intergenic -229819 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 890-30 chr5 93180854 93181284 + 5 NA Intergenic MLT1D|LTR|ERVL-MaLR 390274 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 1415-5 chr3 13815762 13816289 + 5 NA TTS (NM_004625) TTS (NM_004625) 64046 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 1295 chr12 37957306 37957906 + 5 NA Intergenic ALR/Alpha|Satellite|centr -359168 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 876-19 chr19 57399993 57400418 + 5 NA 3' UTR (NM_152909, exon 3 of 3) 3' UTR (NM_152909, exon 3 of 3) 10351 NM_001172773 147694 Hs.126905 NM_152909 ENSG00000188785 ZNF548 - zinc finger protein 548 protein-coding 1001-19 chr8 47754122 47754402 + 5 NA Intergenic L1P2|LINE|L1 -16098 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 588-73 chr2 125001144 125001406 + 5 NA Intergenic MER87|LTR|ERV1 975988 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 1081-18 chr8 138092689 138093064 + 5 NA Intergenic THE1D-int|LTR|ERVL-MaLR -9331 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 972-12 chr20 55928281 55928644 + 5 NA Intergenic UCON17|Unknown|Unknown 77057 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 2684 chr19 37126940 37128330 + 5 NA exon (NM_001329522, exon 5 of 6) exon (NM_001329522, exon 5 of 6) 44801 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 707-56 chr2 181438412 181438647 + 5 NA Intergenic Intergenic -18363 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 704-49 chr21 31361756 31361949 + 5 NA intron (NM_001353690, intron 1 of 27) (TAGA)n|Simple_repeat|Simple_repeat -17498 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 743-18 chr12 41537720 41537996 + 5 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 100119 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 654-35 chr14 65515663 65515882 + 5 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 44670 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 663-25 chr12 14607254 14607489 + 5 NA intron (NR_120465, intron 2 of 5) L1M1|LINE|L1 -39488 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 1348-4 chr14 70535284 70535794 + 5 NA promoter-TSS (NM_003814) promoter-TSS (NM_003814) -535 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 839-51 chr8 92037790 92038103 + 5 NA intron (NM_001198633, intron 1 of 10) L2b|LINE|L2 -20266 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 774-3 chr1 182913015 182913285 + 5 NA intron (NM_030933, intron 6 of 9) MER21A|LTR|ERVL 40016 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 657-26 chr13 100408736 100408940 + 5 NA intron (NR_148027, intron 20 of 23) MER61-int|LTR|ERV1 72177 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 943-16 chr20 24722764 24723117 + 5 NA Intergenic Intergenic -226329 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 719-87 chr8 142957810 142958005 + 5 NA Intergenic MSTC|LTR|ERVL-MaLR -37921 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 838-35 chr8 59548444 59548860 + 5 NA Intergenic Intergenic 429442 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 648-35 chr13 107066349 107066557 + 5 NA Intergenic Intergenic 254510 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 843-14 chr12 45363933 45364274 + 5 NA intron (NM_001025356, intron 8 of 19) L1MB7|LINE|L1 71413 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 1633 chr3 179492930 179493812 + 5 NA Intergenic L1M3c|LINE|L1 -41901 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 1747-2 chr2 118517244 118517913 + 5 NA Intergenic L1MEg|LINE|L1 85388 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 1068-11 chr20 6806417 6806787 + 5 NA Intergenic L1M4a2|LINE|L1 38916 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 1300-7 chr7 94841292 94841768 + 5 NA Intergenic MSTD|LTR|ERVL-MaLR -66064 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 666-126 chrX 45629680 45629843 + 5 NA Intergenic L1M5|LINE|L1 -101327 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 2553 chr19 36875661 36877097 + 5 NA intron (NM_001242476, intron 3 of 3) intron (NM_001242476, intron 3 of 3) 24728 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 895-16 chr18 80056888 80057155 + 5 NA Intergenic THE1D|LTR|ERVL-MaLR -10235 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 757-14 chr14 43160089 43160342 + 5 NA Intergenic Intergenic 1347068 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1307 chr1 214729996 214730326 + 5 NA Intergenic MLT1C|LTR|ERVL-MaLR 126966 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 743-14 chr10 105189838 105190059 + 5 NA intron (NM_014978, intron 14 of 26) intron (NM_014978, intron 14 of 26) -523732 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 1229-7 chr8 128957594 128958055 + 5 NA intron (NR_145483, intron 2 of 3) intron (NR_145483, intron 2 of 3) 8177 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 1017-18 chr5 156026517 156026904 + 5 NA Intergenic Intergenic -300047 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 1115-11 chr3 137179938 137180372 + 5 NA Intergenic L1MEg|LINE|L1 222172 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 769-33 chr2 204540417 204540635 + 5 NA Intergenic L2b|LINE|L2 -4949 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 832-3 chr10 70620432 70620628 + 5 NA Intergenic MER4D|LTR|ERV1 -17742 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 514-59 chr12 40604321 40604483 + 5 NA Intergenic Intergenic -88037 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 1457 chr1 218604273 218604766 + 5 NA intron (NR_031644, intron 3 of 6) L2b|LINE|L2 94424 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 1014-11 chr19 37665631 37666033 + 5 NA Intergenic AluJr|SINE|Alu -9571 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 880-36 chr5 114591843 114592159 + 5 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 15960 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 1080-16 chr2 159585956 159586351 + 5 NA intron (NM_001329857, intron 1 of 36) intron (NM_001329857, intron 1 of 36) -29141 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 922-6 chr11 55024609 55024825 + 5 NA Intergenic ALR/Alpha|Satellite|centr -237438 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 925-13 chr14 81094110 81094461 + 5 NA intron (NM_001142626, intron 6 of 8) intron (NM_001142626, intron 6 of 8) 108549 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 818-61 chr8 58473222 58473514 + 5 NA Intergenic L1MB3|LINE|L1 26795 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 699 chr1 30344022 30344209 + 5 NA Intergenic L1ME2|LINE|L1 -306503 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 996-15 chr2 198560938 198561503 + 5 NA Intergenic L1MA5|LINE|L1 -186123 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 942-19 chr2 215081670 215082007 + 5 NA intron (NR_103740, intron 2 of 54) intron (NR_103740, intron 2 of 54) -49752 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 1138-11 chr5 105452502 105452936 + 5 NA Intergenic Intergenic 353245 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 817-53 chr9 89273353 89273600 + 5 NA Intergenic L1MA8|LINE|L1 -37719 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 1642-3 chr7 14644200 14644693 + 5 NA intron (NM_001350722, intron 13 of 25) L1MA5|LINE|L1 197004 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 731-80 chr9 123843728 123844004 + 5 NA intron (NM_001352968, intron 2 of 18) intron (NM_001352968, intron 2 of 18) 86260 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 752-54 chr4 30890464 30890661 + 5 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 170193 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 884-4 chr11 30848410 30848641 + 5 NA Intergenic Intergenic 144161 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 787-11 chr14 60428689 60428866 + 5 NA Intergenic L1MA4A|LINE|L1 57286 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 1064-8 chr21 27301502 27301887 + 5 NA Intergenic Intergenic -334606 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 883-20 chr2 178721489 178721810 + 5 NA intron (NM_001256850, intron 76 of 312) intron (NM_001256850, intron 76 of 312) -55277 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 861-10 chr16 74182827 74183165 + 5 NA Intergenic L2|LINE|L2 32525 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 653-115 chr7 83058988 83059173 + 5 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 103804 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 841-15 chr19 36741337 36741605 + 5 NA Intergenic L1MB2|LINE|L1 31336 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 860-4 chr10 14694570 14694912 + 5 NA intron (NM_031453, intron 1 of 4) L1MA9|LINE|L1 80156 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 1856 chr19 27594602 27595422 + 5 NA Intergenic ALR/Alpha|Satellite|centr -198419 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 637-92 chr5 41138631 41138917 + 5 NA Intergenic Intergenic -67432 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 841-14 chr19 9528507 9528876 + 5 NA exon (NM_024106, exon 8 of 8) exon (NM_024106, exon 8 of 8) 9954 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 1362-4 chr18 1862500 1863116 + 5 NA Intergenic Intergenic -503179 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1134 chr10 20319048 20319415 + 5 NA Intergenic Intergenic -232739 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 956-5 chr10 108998484 108998992 + 5 NA Intergenic Intergenic 924508 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 935-8 chr11 50371994 50372352 + 5 NA Intergenic ALR/Alpha|Satellite|centr -36974 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1118-14 chr20 53086308 53086767 + 5 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -98746 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 717-87 chr8 137449080 137449298 + 5 NA Intergenic Intergenic -35601 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 879-18 chr21 23282595 23282892 + 5 NA Intergenic A-rich|Low_complexity|Low_complexity 102092 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 1075-7 chr2 107555530 107555922 + 5 NA non-coding (NR_146968, exon 3 of 3) non-coding (NR_146968, exon 3 of 3) 26307 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 971-5 chr10 127627651 127628036 + 5 NA Intergenic L1MA4A|LINE|L1 78494 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 872-27 chr2 119064470 119064739 + 5 NA Intergenic L2a|LINE|L2 94147 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 959-13 chr16 34582211 34582556 + 5 NA Intergenic Intergenic -200903 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 1291-2 chr11 96475220 96475920 + 5 NA intron (NR_047481, intron 1 of 4) L1MA4A|LINE|L1 31307 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 487-170 chr21 42098327 42098510 + 5 NA intron (NM_001004416, intron 6 of 22) intron (NM_001004416, intron 6 of 22) 10116 NR_027243 150147 Hs.558646 NM_152507 ENSG00000184385 UMODL1-AS1 C21orf128 UMODL1 antisense RNA 1 ncRNA 1115-2 chr10 8169279 8169641 + 5 NA Intergenic Intergenic 98845 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 1231-5 chr22 34268435 34268913 + 5 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -345786 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 1327-9 chr9 99506830 99507266 + 5 NA Intergenic Intergenic -131791 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 870-6 chr13 35969479 35969815 + 5 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) -113786 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 1191-2 chr17 53405329 53405803 + 5 NA Intergenic Intergenic -417361 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 558-28 chr11 4866073 4866285 + 5 NA Intergenic L1M4a1|LINE|L1 -5516 NM_001348291 401663 NM_001348291 OR51H1 OR51H1P olfactory receptor family 51 subfamily H member 1 protein-coding 1084-25 chr7 1801865 1802244 + 5 NA Intergenic L1ME3F|LINE|L1 42199 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 2283-2 chr7 50245951 50246811 + 5 NA Intergenic L1MEd|LINE|L1 -57683 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 932-7 chr14 45677616 45677915 + 5 NA Intergenic Intergenic 37837 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 604-134 chr5 127246761 127246987 + 5 NA Intergenic Intergenic -43890 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 1032 chr1 48268955 48269341 + 5 NA Intergenic Intergenic 46432 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 818-55 chr6 125514213 125514485 + 5 NA Intergenic L1MD2|LINE|L1 -160004 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 1438-4 chr7 114826605 114827211 + 5 NA Intergenic L1MEi|LINE|L1 -95246 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 915-14 chr21 23082590 23082836 + 5 NA Intergenic Intergenic 3429 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 833-26 chr3 118246128 118246361 + 5 NA Intergenic Intergenic -395524 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 3476 chr14 62432489 62433861 + 5 NA Intergenic MLT1J|LTR|ERVL-MaLR -293202 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 740-36 chr18 13677901 13678229 + 5 NA intron (NM_152352, intron 2 of 3) intron (NM_152352, intron 2 of 3) 36307 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 1157-12 chr7 40988700 40989101 + 5 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat -8961 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 818-56 chr6 153422769 153423105 + 5 NA Intergenic L1M5|LINE|L1 -291655 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 332-322 chr3 44740852 44740936 + 5 NA Intergenic Intergenic 11259 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 587-145 chr6 121319635 121319941 + 5 NA intron (NR_104452, intron 2 of 35) intron (NR_104452, intron 2 of 35) 14692 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 1797-2 chr8 110002493 110003598 + 5 NA Intergenic L1MA2|LINE|L1 -27274 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 1333-3 chr7 64706322 64706912 + 5 NA exon (NM_001282359, exon 4 of 4) exon (NM_001282359, exon 4 of 4) 27553 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 1020-19 chrX 35714498 35714778 + 5 NA Intergenic Intergenic -83704 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 722-80 chr8 121901391 121901562 + 5 NA Intergenic Intergenic -260036 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 1266 chr10 41764855 41765336 + 5 NA Intergenic ALR/Alpha|Satellite|centr 602950 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 906-28 chr8 16580819 16581273 + 5 NA Intergenic L1M4|LINE|L1 -388255 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 1709 chr17 5179611 5180568 + 5 NA 3' UTR (NM_032530, exon 2 of 2) 3' UTR (NM_032530, exon 2 of 2) 11779 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 716-68 chr5 100973475 100973665 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -70288 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 1655 chr10 62698372 62698968 + 5 NA Intergenic Intergenic -106050 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 933-12 chr14 54305918 54306156 + 5 NA Intergenic Intergenic -90831 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 1143-13 chr5 46029923 46030316 + 5 NA Intergenic ALR/Alpha|Satellite|centr -333739 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 671-24 chr12 34430847 34431083 + 5 NA Intergenic ALR/Alpha|Satellite|centr 408469 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 563-32 chr11 83398704 83398910 + 5 NA Intergenic L1M5|LINE|L1 -112400 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 856-23 chr2 124100181 124100546 + 5 NA intron (NM_130773, intron 1 of 23) MSTA|LTR|ERVL-MaLR 75076 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 578-71 chr17 63297254 63297419 + 5 NA intron (NM_025185, intron 8 of 25) L1MB5|LINE|L1 142931 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 1436-2 chr2 89828598 89829139 + 5 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -190961 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 1062-15 chr5 41080012 41080375 + 5 NA Intergenic L1PB3|LINE|L1 -8851 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 781-10 chr12 15457373 15457671 + 5 NA intron (NM_030667, intron 1 of 26) L1MB1|LINE|L1 -89089 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 585-160 chr8 106258599 106258827 + 5 NA Intergenic L1PB1|LINE|L1 -11465 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 840-51 chr8 138447843 138448126 + 5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 49277 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 996-22 chr5 181022924 181023161 + 5 NA Intergenic Intergenic -17224 NM_001308245 153579 Hs.546502 NM_152547 ENSG00000165810 BTNL9 BTN3|BTN8|VDLS1900 butyrophilin like 9 protein-coding 850-40 chr6 33971909 33972105 + 5 NA Intergenic L1ME1|LINE|L1 28044 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 1602-7 chr21 19423230 19423801 + 5 NA Intergenic Intergenic 476240 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 893-5 chr10 43640444 43640729 + 5 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -3286 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 1380-5 chr8 114162064 114162492 + 5 NA Intergenic L1MA7|LINE|L1 -725339 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 406-40 chr10 85895039 85895162 + 5 NA intron (NM_017551, intron 5 of 15) intron (NM_017551, intron 5 of 15) 317369 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 629-7 chr1 97576842 97577060 + 5 NA intron (NM_000110, intron 10 of 22) intron (NM_000110, intron 10 of 22) -219970 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 923-27 chr8 134333204 134333531 + 5 NA Intergenic THE1A|LTR|ERVL-MaLR -264704 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1747 chr19 9295237 9295922 + 5 NA exon (NM_198535, exon 6 of 6) exon (NM_198535, exon 6 of 6) 14259 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 1963 chr2 95148548 95149407 + 5 NA 3' UTR (NM_032788, exon 5 of 5) 3' UTR (NM_032788, exon 5 of 5) 10608 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 1500-2 chr11 3358267 3359005 + 5 NA non-coding (NR_046382, exon 5 of 5) non-coding (NR_046382, exon 5 of 5) 20510 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 990-4 chr12 33189446 33190113 + 5 NA Intergenic L1MEc|LINE|L1 250040 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 1391-5 chr7 4374857 4375283 + 5 NA Intergenic LTR16C|LTR|ERVL -240233 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 884-15 chr17 48773124 48773477 + 5 NA intron (NM_001130918, intron 13 of 15) L1MEf|LINE|L1 21024 NM_173623 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 697-29 chr15 71082398 71082561 + 5 NA Intergenic L2a|LINE|L2 -58970 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 1262-8 chr20 13032876 13033550 + 5 NA intron (NM_001349945, intron 2 of 12) intron (NM_001349945, intron 2 of 12) 24241 NM_001349945 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 804-47 chr4 44965106 44965405 + 5 NA Intergenic Intergenic -238621 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 1057-19 chr8 126250507 126250894 + 5 NA Intergenic Intergenic -74795 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 676-101 chr6 137183147 137183340 + 5 NA Intergenic MER41-int|LTR|ERV1 -9599 NM_052962 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 877-5 chr13 48744635 48744837 + 5 NA Intergenic MSTD|LTR|ERVL-MaLR 90807 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 1622 chr1 222171658 222172326 + 5 NA Intergenic L1PA16|LINE|L1 -193472 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 834-16 chr17 26883457 26883688 + 5 NA Intergenic ALR/Alpha|Satellite|centr 205669 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 966-6 chr13 71422587 71422983 + 5 NA Intergenic L1MA9|LINE|L1 407644 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 951-19 chr20 40043712 40044102 + 5 NA Intergenic L1MD|LINE|L1 39446 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 1101-2 chr11 1314600 1314979 + 5 NA Intergenic L1M2|LINE|L1 5081 NR_029409 255512 Hs.588291 NR_029409 ENSG00000255153 TOLLIP-AS1 - TOLLIP antisense RNA 1 (head to head) ncRNA 1258-10 chrX 82030134 82030491 + 5 NA Intergenic L1MA4A|LINE|L1 828210 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 1137-9 chr8 83737716 83738046 + 5 NA Intergenic Intergenic 334123 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 735-42 chr2 72206888 72207239 + 5 NA intron (NR_135773, intron 19 of 21) L1ME4a|LINE|L1 -59201 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 770-60 chr5 114988514 114988714 + 5 NA Intergenic LTR84b|LTR|ERVL 181294 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 703-8 chr10 15974848 15975147 + 5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -114464 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 869-10 chr10 110774182 110774451 + 5 NA intron (NM_001134363, intron 1 of 13) intron (NM_001134363, intron 1 of 13) 96588 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 1712 chr5 141261186 141262024 + 5 NA Intergenic Intergenic 16210 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 898-2 chr1 79476814 79477140 + 5 NA Intergenic Intergenic -470247 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 836-45 chr5 8699679 8699964 + 5 NA Intergenic Intergenic -139911 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 607-63 chr18 76090872 76091030 + 5 NA Intergenic L2a|LINE|L2 -32047 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 910-14 chr15 56176178 56176422 + 5 NA intron (NM_001368073, intron 2 of 8) L1M4a1|LINE|L1 13632 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 649-58 chr2 215758108 215758358 + 5 NA intron (NR_037195, intron 1 of 9) intron (NR_037195, intron 1 of 9) 40190 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 591-111 chr4 59486936 59487186 + 5 NA Intergenic Intergenic 473488 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 690-7 chr10 63706232 63706392 + 5 NA Intergenic MER102c|DNA|hAT-Charlie -184422 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 881-8 chr13 42401203 42401522 + 5 NA Intergenic Intergenic -23530 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 489-105 chr17 56306020 56306196 + 5 NA intron (NM_001370326, intron 3 of 20) L1MD|LINE|L1 152633 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 1996 chr2 43103137 43103916 + 5 NA Intergenic Intergenic -1081 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 846-43 chr5 118082963 118083266 + 5 NA intron (NR_104997, intron 2 of 2) MIR|SINE|MIR -199460 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 949-18 chr5 112564952 112565239 + 5 NA Intergenic (ACAT)n|Simple_repeat|Simple_repeat -63341 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 964-13 chr2 6374797 6375065 + 5 NA non-coding (NR_110251, exon 1 of 3) non-coding (NR_110251, exon 1 of 3) 491 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 1124-9 chr5 124009525 124009925 + 5 NA Intergenic Intergenic 428795 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 1163-5 chr14 24544808 24545207 + 5 NA Intergenic L1MA1|LINE|L1 31243 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 826-54 chr5 169609860 169610156 + 5 NA Intergenic L1M1|LINE|L1 25928 NM_001329640 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 829-48 chr9 7292250 7292524 + 5 NA Intergenic L1MC5a|LINE|L1 507391 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 801-9 chr12 37898511 37898771 + 5 NA Intergenic ALR/Alpha|Satellite|centr -418133 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 614-136 chr8 100001815 100002005 + 5 NA intron (NM_015668, intron 18 of 27) L2a|LINE|L2 -2672 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 506-146 chr2 78852955 78853196 + 5 NA Intergenic MIRb|SINE|MIR -172627 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 994-2 chr1 216796504 216796873 + 5 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) 8697 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 907-9 chr15 58273089 58273417 + 5 NA Intergenic L1MEg|LINE|L1 134872 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 957-22 chr4 155770699 155771155 + 5 NA intron (NM_001291951, intron 2 of 14) L2a|LINE|L2 11906 NM_001291952 2983 Hs.77890 NM_000857 ENSG00000061918 GUCY1B1 GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3 guanylate cyclase 1 soluble subunit beta 1 protein-coding 1081-9 chr2 226217401 226217769 + 5 NA Intergenic Intergenic 74791 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 3080 chr10 43524438 43525845 + 5 NA Intergenic Intergenic 43318 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 1049-7 chr16 75170504 75170901 + 5 NA 3' UTR (NM_153688, exon 4 of 4) 3' UTR (NM_153688, exon 4 of 4) 21651 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 942-34 chr5 152977725 152978058 + 5 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -5542 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 908-18 chr2 57654797 57655112 + 5 NA Intergenic LTR28C|LTR|ERV1 -252697 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 871 chr1 227577068 227577456 + 5 NA intron (NM_001367909, intron 1 of 3) L1PA13|LINE|L1 13706 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 629-133 chr8 127537384 127537555 + 5 NA Intergenic MIRb|SINE|MIR -55330 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 347-541 chr9 29361012 29361168 + 5 NA Intergenic L1M5|LINE|L1 -147489 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1559 chr11 54777565 54778011 + 5 NA Intergenic ALR/Alpha|Satellite|centr 70956 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 709-61 chr3 128922239 128922579 + 5 NA intron (NM_001348520, intron 11 of 14) HERVK14-int|LTR|ERVK 42789 NM_014049 28976 Hs.567482 NM_014049 ENSG00000177646 ACAD9 MC1DN20|NPD002 acyl-CoA dehydrogenase family member 9 protein-coding 1195 chr10 39525317 39525653 + 5 NA Intergenic ALR/Alpha|Satellite|centr 828889 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 700-99 chr8 135370205 135370413 + 5 NA Intergenic L3|LINE|CR1 -87147 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1354-4 chr11 115813631 115814365 + 5 NA Intergenic Intergenic -53798 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 1039-22 chrX 75909647 75909983 + 5 NA Intergenic MLT2A1|LTR|ERVL -124561 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 858-18 chr18 4960115 4960382 + 5 NA Intergenic Intergenic -120934 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1033-6 chr2 108105630 108105991 + 5 NA Intergenic ERVL-E-int|LTR|ERVL -53055 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 963-7 chr12 2511780 2512146 + 5 NA intron (NM_199460, intron 8 of 49).2 intron (NM_199460, intron 8 of 49).2 160257 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 1218-2 chr10 32754335 32754744 + 5 NA intron (NM_001321115, intron 29 of 43) intron (NM_001321115, intron 29 of 43) 146933 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 1009-6 chr14 81638835 81639256 + 5 NA Intergenic Intergenic -15984 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 1401-7 chr7 123048175 123048960 + 5 NA Intergenic L1M1|LINE|L1 -52867 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 755-55 chr5 148879177 148879399 + 5 NA Intergenic Intergenic 52695 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 763-59 chr7 14787188 14787413 + 5 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 54150 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 4484 chr7 2025454 2027463 + 5 NA intron (NM_001013837, intron 12 of 18) L1MEg|LINE|L1 62594 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 966-2 chr10 55321564 55321913 + 5 NA intron (NM_001354404, intron 2 of 34) L1PA15|LINE|L1 -277304 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 573-6 chr1 106044010 106044216 + 5 NA Intergenic Intergenic -15860 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 921-9 chr19 29225178 29225518 + 5 NA Intergenic Intergenic -12197 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1279-2 chr16 5686199 5686703 + 5 NA Intergenic Intergenic 53984 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 822-32 chr2 106788679 106789013 + 5 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 97182 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 994-4 chr12 61024659 61024984 + 5 NA Intergenic L1PB1|LINE|L1 1168018 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 832-40 chr6 139667850 139668041 + 5 NA Intergenic Intergenic -103128 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 802-39 chr20 5313044 5313384 + 5 NA intron (NM_144773, intron 2 of 2) A-rich|Low_complexity|Low_complexity 3518 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 1066-14 chr3 121115360 121115704 + 5 NA intron (NR_145517, intron 6 of 8) intron (NR_145517, intron 6 of 8) 65892 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 1000-23 chr7 5099317 5099768 + 5 NA Intergenic L1MA5|LINE|L1 27482 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 751-62 chr5 96776625 96776900 + 5 NA intron (NM_001198541, intron 18 of 18) intron (NM_001198541, intron 18 of 18) 31183 NM_001040458 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 1507 chr1 225293778 225294281 + 5 NA intron (NM_001367479, intron 55 of 85) L1MA5A|LINE|L1 134009 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 1229-4 chr21 18035168 18035594 + 5 NA intron (NM_001204178, intron 2 of 5) L1MEc|LINE|L1 118041 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 685-81 chr6 105904071 105904303 + 5 NA Intergenic Intergenic -182149 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 606-39 chr12 63181584 63181780 + 5 NA Intergenic Intergenic -28872 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 1320-9 chr5 153942061 153942729 + 5 NA Intergenic MER53|DNA|hAT -43408 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 656-7 chr1 115163840 115164023 + 5 NA Intergenic L1ME2|LINE|L1 -74428 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 1305-2 chr13 54720235 54720594 + 5 NA Intergenic L1MA5A|LINE|L1 -408366 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 907-7 chr10 81796281 81796535 + 5 NA Intergenic L3|LINE|CR1 -78786 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 1053-22 chrX 45722533 45722888 + 5 NA Intergenic Intergenic -8378 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 946-15 chr3 105066127 105066429 + 5 NA Intergenic L1MA2|LINE|L1 -300435 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 1610-4 chr7 64523046 64523955 + 5 NA intron (NM_178558, intron 3 of 3) intron (NM_178558, intron 3 of 3) 39571 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 860-11 chr12 133073857 133074176 + 5 NA Intergenic Intergenic -6187 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 900-31 chr4 41695513 41695840 + 5 NA intron (NM_001330786, intron 22 of 22) L1ME3G|LINE|L1 53294 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 739-52 chr4 43847284 43847487 + 5 NA Intergenic LTR12C|LTR|ERV1 -169476 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 1196-7 chr5 95094483 95094927 + 5 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -12839 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 814-38 chr2 223389669 223389979 + 5 NA Intergenic MER49|LTR|ERV1 212537 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 770-20 chr15 57908526 57908759 + 5 NA Intergenic Intergenic 105381 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 430-288 chr7 55812147 55812250 + 5 NA intron (NM_207366, intron 7 of 9) L1MA7|LINE|L1 50554 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 776-45 chr5 86169235 86169478 + 5 NA Intergenic MIR|SINE|MIR -113088 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 911-16 chr2 241022891 241023190 + 5 NA intron (NM_001080437, intron 1 of 31) L1MA9|LINE|L1 24422 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 778-17 chr11 115791583 115791905 + 5 NA Intergenic Intergenic -31544 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 814-13 chr12 16007562 16007757 + 5 NA intron (NM_015954, intron 6 of 8) intron (NM_015954, intron 6 of 8) 96327 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 933-5 chr10 69624236 69624549 + 5 NA Intergenic L1MDa|LINE|L1 -5855 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 1680-5 chr7 118014959 118015656 + 5 NA Intergenic Intergenic -141866 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 412-44 chr10 128418373 128418504 + 5 NA Intergenic Intergenic 132488 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 1024-6 chr1 222397586 222397990 + 5 NA Intergenic L2a|LINE|L2 150316 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 455-295 chr9 10928730 10928952 + 5 NA Intergenic Intergenic 315635 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 361-142 chr14 68398649 68398789 + 5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 230068 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 688-42 chr14 62650841 62650992 + 5 NA Intergenic Tigger2a|DNA|TcMar-Tigger 394542 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 659-77 chr4 31944604 31944755 + 5 NA Intergenic Intergenic -52700 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 1027-12 chr3 181124311 181124756 + 5 NA intron (NR_075091, intron 2 of 7) L1PA11|LINE|L1 -50611 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 911-21 chr5 141262607 141262912 + 5 NA Intergenic LTR33C|LTR|ERVL 17364 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 1311-7 chr9 27813880 27814445 + 5 NA Intergenic L1MA4A|LINE|L1 -240296 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 580-198 chr8 87056346 87056542 + 5 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 190029 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 714-33 chr19 52441617 52441910 + 5 NA 3' UTR (NM_001351679, exon 4 of 4) 3' UTR (NM_001351679, exon 4 of 4) -11790 NM_001366182 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 855-33 chr3 2716354 2716776 + 5 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -175650 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 874-25 chr6 51925485 51925753 + 5 NA intron (NM_138694, intron 37 of 66) MLT2B1|LTR|ERVL 161994 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 770-39 chr2 119777233 119777519 + 5 NA intron (NM_002830, intron 1 of 26) L2a|LINE|L2 17454 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 593-101 chr3 144958039 144958198 + 5 NA Intergenic Intergenic 985037 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 860-8 chr11 81798101 81798409 + 5 NA Intergenic L1MEi|LINE|L1 92581 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 1128-12 chr5 123619128 123619511 + 5 NA Intergenic Cheshire|DNA|hAT-Charlie 73902 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 4347 chr8 124975782 124977597 + 5 NA exon (NM_152412, exon 3 of 3) exon (NM_152412, exon 3 of 3) 3394 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 808-51 chr7 49511005 49511306 + 5 NA Intergenic L1M4|LINE|L1 -262483 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 1589-5 chr14 88953452 88954119 + 5 NA Intergenic MLT1J|LTR|ERVL-MaLR 129134 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 876-34 chr7 51848566 51848868 + 5 NA Intergenic Intergenic -455461 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 1292 chr1 221223776 221224185 + 5 NA Intergenic L1MEf|LINE|L1 112316 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 1009-11 chr2 51010232 51010526 + 5 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 21753 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1010-10 chr6 120015402 120015744 + 5 NA TTS (NR_036098) TTS (NR_036098) 394 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 582-57 chr18 1259304 1259536 + 5 NA Intergenic L1PA16|LINE|L1 100209 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 905-23 chr4 31364060 31364362 + 5 NA Intergenic Intergenic -142333 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 700-45 chr2 5128928 5129147 + 5 NA Intergenic Intergenic -472815 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 911 chr1 109926136 109926541 + 5 NA 3' UTR (NM_172212, exon 9 of 9) 3' UTR (NM_172212, exon 9 of 9) 15489 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 438-179 chr3 145796938 145797154 + 5 NA Intergenic L1PA16|LINE|L1 272139 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 668-17 chr12 24356189 24356356 + 5 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 133001 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 811-53 chrX 94619410 94619728 + 5 NA Intergenic Intergenic 443657 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 889-14 chr14 56357167 56357680 + 5 NA Intergenic Intergenic -156908 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 1232-6 chr4 65095583 65096053 + 5 NA Intergenic L1MC4|LINE|L1 -91318 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 879-29 chr8 24212911 24213192 + 5 NA Intergenic L1MEd|LINE|L1 -80989 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 825-58 chr9 29923856 29924069 + 5 NA Intergenic Intergenic 484492 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 1368 chr12 14342371 14342920 + 5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -22987 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 1054-2 chr12 126831232 126831707 + 5 NA Intergenic Intergenic 43221 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 1477-9 chr8 126687097 126687544 + 5 NA Intergenic L1ME3C|LINE|L1 -128842 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 709-46 chr2 197055510 197055857 + 5 NA intron (NM_001367496, intron 16 of 27) L1M5|LINE|L1 -128976 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 852-14 chr12 45701131 45701460 + 5 NA Intergenic Intergenic 26626 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 959-3 chr10 41897576 41897995 + 5 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 470260 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1026-14 chr21 18760663 18761051 + 5 NA Intergenic Intergenic -1045 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 919-29 chrUn_KI270589v1 41797 42162 + 5 NA NA (CATTC)n|Satellite|Satellite NA NA 788-17 chr14 63718678 63718981 + 5 NA intron (NM_030791, intron 1 of 2).2 L1ME4b|LINE|L1 9236 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 880-12 chr15 81968505 81968812 + 5 NA Intergenic L1MB7|LINE|L1 77360 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 963-31 chr8 83485167 83485475 + 5 NA Intergenic Charlie2b|DNA|hAT-Charlie 81563 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 787-36 chr5 5965106 5965358 + 5 NA Intergenic L2a|LINE|L2 372060 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 902-21 chr2 136531571 136531838 + 5 NA Intergenic Intergenic -233841 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 1026-24 chr8 42601300 42601689 + 5 NA Intergenic MLT2F|LTR|ERVL -59540 NM_006749 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 1039-15 chr3 54563528 54563992 + 5 NA intron (NM_018398, intron 6 of 37) intron (NM_018398, intron 6 of 37) 76097 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 663-38 chr14 84305943 84306154 + 5 NA Intergenic L1PA16|LINE|L1 -965884 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 394-177 chr2 107971912 107972005 + 5 NA Intergenic Intergenic -14566 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 1145-12 chr8 65051191 65051626 + 5 NA Intergenic Intergenic 128932 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 710-51 chr20 2701568 2701771 + 5 NA intron (NM_001110514, intron 2 of 17) intron (NM_001110514, intron 2 of 17) 8791 NM_001110514 57593 Hs.471955 NM_020833 ENSG00000088881 EBF4 COE4|O/E-4 EBF family member 4 protein-coding 1149-10 chr7 109790820 109791170 + 5 NA Intergenic HERVL-int|LTR|ERVL 169218 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 1001-12 chr3 117322077 117322508 + 5 NA Intergenic L1MB2|LINE|L1 368633 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 1057-8 chr18 11544377 11544746 + 5 NA Intergenic HERV1_LTRe|LTR|ERV1 54513 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 1150-8 chr8 107720546 107721017 + 5 NA Intergenic L1ME2|LINE|L1 -222863 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 1197-2 chr11 81021619 81022087 + 5 NA Intergenic Intergenic -259050 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 555-216 chr9 81135073 81135264 + 5 NA Intergenic Intergenic 554367 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 672-29 chr15 58102514 58102751 + 5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -35537 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 1256-6 chr4 42756380 42756889 + 5 NA Intergenic Intergenic -99529 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 1449 chr4 71862409 71862862 + 5 NA Intergenic MER4B-int|LTR|ERV1 -57115 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 483-66 chr14 64546176 64546345 + 5 NA Intergenic AluSx|SINE|Alu -3701 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 420-7 chr1 49354636 49354782 + 5 NA intron (NR_136623, intron 2 of 12) MER6A|DNA|TcMar-Tigger 97298 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 775-26 chr14 61832758 61833065 + 5 NA intron (NM_001367656, intron 1 of 7) L1MEd|LINE|L1 20208 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 735-58 chr3 105016642 105016865 + 5 NA Intergenic Intergenic -349960 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 1197-11 chr8 139697530 139698002 + 5 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 5357 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1417-2 chr12 112755522 112756334 + 5 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -35610 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 981-22 chr4 65710195 65710552 + 5 NA Intergenic Intergenic -39878 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 695-38 chr17 33910213 33910408 + 5 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR 246496 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 1324-6 chr7 8025572 8026171 + 5 NA intron (NM_138426, intron 3 of 7) L1M4|LINE|L1 57075 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 1365-7 chr9 29098893 29099406 + 5 NA intron (NM_001354574, intron 1 of 5) L1MA2|LINE|L1 113150 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 831-16 chr17 58949185 58949548 + 5 NA intron (NM_014906, intron 1 of 6) L1M2c|LINE|L1 157514 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 738-33 chr19 36611771 36611936 + 5 NA intron (NM_001256838, intron 4 of 4) intron (NM_001256838, intron 4 of 4) 6540 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 783-71 chr7 28311411 28311588 + 5 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 12178 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 864-10 chr13 113571785 113572048 + 5 NA Intergenic L1MC1|LINE|L1 -12772 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 719-45 chr22 33402626 33402874 + 5 NA intron (NM_133642, intron 7 of 14) intron (NM_133642, intron 7 of 14) 33919 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 845-19 chr2 79657119 79657315 + 5 NA intron (NM_001282598, intron 2 of 17) L1M5|LINE|L1 -7858 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 819-2 chr10 18814863 18815041 + 5 NA Intergenic L1MC|LINE|L1 155521 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 774-50 chr20 40953123 40953294 + 5 NA Intergenic AluJr|SINE|Alu -27505 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 844-43 chr20 53446511 53446783 + 5 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -106123 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 920 chr1 5183345 5183612 + 5 NA Intergenic L1ME1|LINE|L1 528869 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 750-54 chr4 71461405 71461616 + 5 NA intron (NM_003759, intron 9 of 22) intron (NM_003759, intron 9 of 22) 122457 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 810-11 chr14 44882055 44882270 + 5 NA Intergenic L1MA3|LINE|L1 -15113 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 992 chr1 214094610 214094966 + 5 NA Intergenic L1PA15|LINE|L1 106255 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 918 chr1 171936374 171936867 + 5 NA intron (NM_001278252, intron 2 of 14) intron (NM_001278252, intron 2 of 14) 72428 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 1373-5 chr19 40016524 40016993 + 5 NA 3' UTR (NM_001297763, exon 7 of 7) 3' UTR (NM_001297763, exon 7 of 7) 19698 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 1176-5 chr15 95240993 95241626 + 5 NA Intergenic Intergenic 85791 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 1161 chr11 131085338 131085784 + 5 NA Intergenic L1MEf|LINE|L1 -169074 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 842-43 chr6 18819066 18819370 + 5 NA Intergenic Intergenic 247434 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 865-35 chr4 56202498 56202815 + 5 NA intron (NM_020722, intron 2 of 10) MamRep434|DNA|TcMar-Tigger 32461 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 669-118 chr8 138011402 138011579 + 5 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 72055 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 774-18 chr12 34538907 34539111 + 5 NA Intergenic ALR/Alpha|Satellite|centr 516513 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 856-47 chr7 110958469 110958659 + 5 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -132442 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 934-33 chr8 125943446 125943765 + 5 NA non-coding (NR_038446, exon 2 of 2) non-coding (NR_038446, exon 2 of 2) 7592 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1013-11 chr20 42658016 42658474 + 5 NA intron (NM_133170, intron 7 of 31) Tigger17a|DNA|TcMar-Tigger -27238 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 474-134 chr2 54316988 54317265 + 5 NA Intergenic MER3|DNA|hAT-Charlie -13758 NM_001369403 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 1240 chr17 50011559 50012006 + 5 NA Intergenic L1MC5|LINE|L1 -16558 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 803-64 chr9 96760757 96761085 + 5 NA intron (NM_001314060, intron 4 of 4) intron (NM_001314060, intron 4 of 4) 17166 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 650-20 chr12 34649270 34649431 + 5 NA Intergenic ALR/Alpha|Satellite|centr 626854 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 556-19 chr10 39178184 39178436 + 5 NA Intergenic ALR/Alpha|Satellite|centr 481714 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 745-2 chr1 238133229 238133415 + 5 NA Intergenic Intergenic -242400 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 488-17 chr1 194552363 194552510 + 5 NA Intergenic L1ME3A|LINE|L1 1247691 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 1048-26 chr8 141502608 141503092 + 5 NA intron (NR_160399, intron 1 of 29) AluJo|SINE|Alu 4379 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 728-74 chr5 87495800 87496080 + 5 NA Intergenic L1PB4|LINE|L1 -82907 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 794-17 chr14 66437474 66437661 + 5 NA Intergenic Tigger17a|DNA|TcMar-Tigger -48804 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 833-31 chr5 133390408 133390775 + 5 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 37115 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 1092-18 chr8 78743255 78743761 + 5 NA intron (NM_001199886, intron 2 of 4) L1PA12|LINE|L1 -19134 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 861-19 chr20 55962991 55963251 + 5 NA Intergenic Intergenic 42398 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 1030-13 chr16 73006532 73006913 + 5 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 41406 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 1645-4 chr5 125703940 125704499 + 5 NA Intergenic L1M4|LINE|L1 210958 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 1093-12 chr5 85493685 85494260 + 5 NA Intergenic L1MA7|LINE|L1 -788472 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 890-43 chr8 133705604 133705896 + 5 NA Intergenic L1M4|LINE|L1 -21684 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 799-38 chr3 74309424 74309611 + 5 NA intron (NM_020872, intron 12 of 21) MER5B|DNA|hAT-Charlie 211623 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 880-49 chr8 119622944 119623178 + 5 NA intron (NM_001330600, intron 3 of 25) intron (NM_001330600, intron 3 of 25) 15778 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 1546 chr1 53610021 53610534 + 5 NA intron (NM_001367484, intron 2 of 10) L1MEg|LINE|L1 123927 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 929-6 chr11 63579890 63580281 + 5 NA intron (NM_007069, intron 3 of 3) HAL1|LINE|L1 -16706 NM_017878 54979 Hs.272805 NM_017878 ENSG00000133328 PLAAT2 HRASLS2|PLA1/2-2|PLAAT-2 phospholipase A and acyltransferase 2 protein-coding 1402-7 chrX 55876265 55876655 + 5 NA Intergenic L1M1|LINE|L1 -31663 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 810-25 chr2 180036621 180036945 + 5 NA Intergenic L1MB2|LINE|L1 -29486 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 907-29 chr9 9954489 9954673 + 5 NA intron (NM_002839, intron 4 of 45) intron (NM_002839, intron 4 of 45) 155189 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 969-9 chr14 66681352 66681660 + 5 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 174099 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 1084-2 chr10 9550133 9550481 + 5 NA Intergenic Intergenic -254714 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 1612 chr14 67030700 67031420 + 5 NA intron (NM_001024218, intron 9 of 21) intron (NM_001024218, intron 9 of 21) -158380 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 666-57 chr2 115741616 115741808 + 5 NA intron (NM_001321912, intron 10 of 25) intron (NM_001321912, intron 10 of 25) 397897 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 901-29 chr5 141242344 141242770 + 5 NA non-coding (NR_001282, exon 1 of 1) non-coding (NR_001282, exon 1 of 1) 2436 NR_001282 84054 Hs.570898 NR_001282 PCDHB19P PCDH-PSI5|PCDHB19 protocadherin beta 19 pseudogene pseudo 1018-22 chr20 42237287 42237663 + 5 NA intron (NM_133170, intron 15 of 31) Charlie15a|DNA|hAT-Charlie -448008 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 1321-10 chr8 115224531 115225052 + 5 NA Intergenic MLT2B1|LTR|ERVL 443222 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 1467-4 chr14 88266681 88267202 + 5 NA intron (NM_021161, intron 1 of 6) intron (NM_021161, intron 1 of 6) 3970 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 964-5 chr10 112662338 112662715 + 5 NA intron (NM_001365712, intron 6 of 8) L1MEf|LINE|L1 28356 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 1113-5 chr6 40148966 40149382 + 5 NA Intergenic Intergenic 206832 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 872-37 chr5 110009824 110010213 + 5 NA Intergenic Intergenic 126836 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 800-33 chr2 148088660 148088965 + 5 NA intron (NM_018328, intron 2 of 14) L1PB1|LINE|L1 -67208 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 369-237 chr2 240491748 240491852 + 5 NA intron (NM_017844, intron 11 of 13) L1MA4A|LINE|L1 -35100 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 809-25 chr2 51228188 51228492 + 5 NA intron (NR_135237, intron 2 of 10) ERV3-16A3_I-int|LTR|ERVL 195739 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 577-137 chr4 151901913 151902135 + 5 NA Intergenic L1M3de|LINE|L1 -141001 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 879-25 chr7 43856061 43856312 + 5 NA Intergenic MLT1D|LTR|ERVL-MaLR 13331 NM_032014 64951 Hs.284286 NM_032014 ENSG00000062582 MRPS24 HSPC335|MRP-S24|S24mt|bMRP-47|bMRP47 mitochondrial ribosomal protein S24 protein-coding 530-214 chr6 41403033 41403305 + 5 NA Intergenic MIR|SINE|MIR 67561 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 1011-16 chr6 52369552 52369821 + 5 NA intron (NM_133367, intron 1 of 1) intron (NM_133367, intron 1 of 1) 7535 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 707-38 chr16 71450070 71450317 + 5 NA intron (NM_001304494, intron 2 of 2) L1ME4b|LINE|L1 -8139 NM_001367365 1009-2 chr1 177686176 177686595 + 5 NA Intergenic Intergenic -14139 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 975-10 chr17 3478207 3478567 + 5 NA intron (NM_001128085, intron 2 of 6) intron (NM_001128085, intron 2 of 6) 2390 NM_000049 443 Hs.171142 NM_000049 ENSG00000108381 ASPA ACY2|ASP aspartoacylase protein-coding 1210-5 chr11 109517783 109518153 + 5 NA Intergenic Intergenic 95778 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 1056-21 chr8 68780190 68780523 + 5 NA intron (NR_146187, intron 11 of 13) intron (NR_146187, intron 11 of 13) 323834 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 1370-7 chr5 8805016 8805508 + 5 NA Intergenic THE1B-int|LTR|ERVL-MaLR -34470 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 934-13 chr14 68065863 68066286 + 5 NA intron (NM_133509, intron 7 of 10) L1ME4a|LINE|L1 242482 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 959-7 chr12 90144291 90144541 + 5 NA Intergenic Intergenic -148902 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 842-23 chr2 138411645 138411877 + 5 NA Intergenic Intergenic -90009 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 872-20 chr15 79120328 79120635 + 5 NA Intergenic Intergenic -29701 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 816-21 chr19 52035186 52035495 + 5 NA exon (NM_014650, exon 5 of 5) exon (NM_014650, exon 5 of 5) -6961 NM_025040 80110 Hs.292336 NM_025040 ENSG00000142556 ZNF614 - zinc finger protein 614 protein-coding 982-27 chr8 34154208 34154572 + 5 NA Intergenic Intergenic -554284 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 1365-2 chr19 56575827 56576350 + 5 NA intron (NM_001001668, intron 5 of 5) L1M5|LINE|L1 8620 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 635-2 chr1 45127866 45128068 + 5 NA intron (NM_020883, intron 1 of 13) L1MD1|LINE|L1 78638 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 1070-3 chr10 111772665 111773089 + 5 NA Intergenic LTR79|LTR|ERVL 410888 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 2651 chr1 227656651 227657895 + 5 NA 3' UTR (NM_001367910, exon 5 of 5) 3' UTR (NM_001367910, exon 5 of 5) 40434 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 932-29 chr7 48070814 48071120 + 5 NA Intergenic Charlie1b|DNA|hAT-Charlie -17636 NM_001287426 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 727-84 chr8 87638414 87638677 + 5 NA Intergenic Intergenic 235470 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 1127-6 chr6 72929489 72929846 + 5 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 38086 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 771-43 chr2 150902762 150903092 + 5 NA Intergenic Intergenic 274030 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 813-17 chr17 61255815 61256058 + 5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 111768 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 910-30 chr3 193421994 193422275 + 5 NA intron (NM_032279, intron 25 of 29) L1MA6|LINE|L1 -43381 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 580-210 chrX 110912863 110913041 + 5 NA Intergenic Intergenic -31289 NM_001128167 5063 Hs.593599 NM_002578 ENSG00000077264 PAK3 ARA|MRX30|MRX47|OPHN3|PAK-3|PAK3beta|bPAK|beta-PAK p21 (RAC1) activated kinase 3 protein-coding 695-108 chr8 140380746 140380983 + 5 NA intron (NM_001160372, intron 7 of 22) L1MB7|LINE|L1 76880 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 1188-8 chr3 29192967 29193445 + 5 NA Intergenic L1MA8|LINE|L1 87733 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 1800 chr14 66573895 66574691 + 5 NA intron (NM_001024218, intron 1 of 21) L1MA8|LINE|L1 66886 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 1000-3 chr10 83110411 83110796 + 5 NA Intergenic L1PA13|LINE|L1 566486 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1061-9 chr2 12614229 12614510 + 5 NA Intergenic Intergenic -102503 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 512-221 chr5 104469341 104469458 + 5 NA Intergenic L1M4b|LINE|L1 -630075 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 1780-3 chr2 2406640 2407230 + 5 NA Intergenic HAL1|LINE|L1 -75660 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 985-9 chr14 49899854 49900173 + 5 NA Intergenic Intergenic 6931 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 1408 chr10 67007097 67007919 + 5 NA intron (NR_111911, intron 1 of 6) intron (NR_111911, intron 1 of 6) 4645 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 831-25 chr20 33136833 33137131 + 5 NA Intergenic Intergenic -24788 NM_001319164 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 906-6 chr1 213802720 213802996 + 5 NA Intergenic Intergenic -121891 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 1641-2 chr7 8377969 8378448 + 5 NA Intergenic Intergenic -55401 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 863-2 chr10 78121258 78121621 + 5 NA Intergenic L1M4|LINE|L1 87576 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 1137-5 chr20 42121382 42121867 + 5 NA intron (NM_133170, intron 20 of 31) intron (NM_133170, intron 20 of 31) -503247 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 646-92 chr3 168385766 168385961 + 5 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) 136341 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 687-25 chr11 30705932 30706199 + 5 NA Intergenic Intergenic -119712 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 1065-15 chr8 59222229 59222622 + 5 NA Intergenic L1MEc|LINE|L1 103215 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 1769 chr12 37812152 37813016 + 5 NA Intergenic ALR/Alpha|Satellite|centr -504190 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 968-28 chr7 136307751 136308072 + 5 NA Intergenic Intergenic -330552 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 551-181 chr6 153281709 153281885 + 5 NA Intergenic L2|LINE|L2 -150515 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 1051-9 chr2 202702138 202702365 + 5 NA intron (NM_173511, intron 2 of 7) AluSg|SINE|Alu 67282 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 856-21 chr19 51515133 51515337 + 5 NA Intergenic L1MEg|LINE|L1 -13435 NM_053003 89858 Hs.249741 NM_033329 ENSG00000254521 SIGLEC12 S2V|SIGLECL1|SLG|Siglec-XII sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding 885-9 chr18 13312614 13312885 + 5 NA intron (NM_181482, intron 2 of 5) AluJo|SINE|Alu 34644 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 674-27 chr14 43809388 43809567 + 5 NA Intergenic L1PA16|LINE|L1 697806 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1812-2 chr7 56757550 56758283 + 5 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 54820 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 943-11 chr17 69035238 69035525 + 5 NA exon (NM_080283, exon 8 of 39) exon (NM_080283, exon 8 of 39) 25546 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 768-42 chr5 152599385 152599618 + 5 NA Intergenic MamRep137|DNA|TcMar-Tigger -194222 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 1212-4 chr18 77369987 77370399 + 5 NA Intergenic L1MCc|LINE|L1 120345 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 663-65 chr22 34814497 34814781 + 5 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 183277 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 562-191 chr6 103331657 103331926 + 5 NA Intergenic L1ME1|LINE|L1 1527755 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 1731-3 chr8 138397334 138397937 + 5 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 99626 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1229-6 chr7 64710139 64710696 + 5 NA 3' UTR (NM_001282359, exon 4 of 4) 3' UTR (NM_001282359, exon 4 of 4) 31353 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 790-20 chr19 43871481 43871793 + 5 NA TTS (NM_001033719) TTS (NM_001033719) 8499 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 1267-4 chr17 58894573 58895073 + 5 NA intron (NM_014906, intron 1 of 6) L1M5|LINE|L1 138954 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 1180-7 chr19 52474816 52475239 + 5 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 21474 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 1101-15 chr5 120151437 120151720 + 5 NA Intergenic Intergenic -312700 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 1280-7 chr8 124980516 124981025 + 5 NA Intergenic Intergenic 7475 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 561-96 chr2 61594634 61594782 + 5 NA Intergenic Intergenic -56352 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 831-13 chr15 83483519 83483834 + 5 NA intron (NM_003027, intron 1 of 8) intron (NM_003027, intron 1 of 8) -6938 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 1091-7 chr5 62996125 62996521 + 5 NA Intergenic L1MC1|LINE|L1 417504 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 1839 chr8 83612374 83613097 + 5 NA Intergenic Intergenic 208977 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 895-39 chr6 129856943 129857491 + 5 NA intron (NM_001010876, intron 1 of 4) L1M4|LINE|L1 4098 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 1119-4 chr20 58531333 58531781 + 5 NA intron (NR_034147, intron 5 of 6) L1MCc|LINE|L1 -16158 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 1973 chr19 37803784 37804524 + 5 NA Intergenic Intergenic -13257 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 541-247 chr8 134701004 134701212 + 5 NA intron (NM_001289394, intron 1 of 16) L1MB3|LINE|L1 -4553 NM_001167583 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 1117-4 chr14 68392419 68392703 + 5 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 236226 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1024-15 chr2 192085649 192085904 + 5 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 109157 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 897-30 chr4 155521797 155522146 + 5 NA Intergenic L2b|LINE|L2 -144739 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 286-152 chr17 21960371 21960460 + 5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -242580 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 865-34 chr4 4725641 4725932 + 5 NA Intergenic MLT2D|LTR|ERVL -35974 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 846-33 chr4 81873 82213 + 5 NA intron (NM_182524, intron 3 of 3) L1MB2|LINE|L1 28722 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 829-43 chr7 88930465 88930923 + 5 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -134957 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 847-40 chr5 45955314 45955529 + 5 NA Intergenic ALR/Alpha|Satellite|centr -259041 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 629-46 chr14_GL000225v1_random 11687 11979 + 5 NA NA BSR/Beta|Satellite|Satellite NA NA 1228-8 chr6 68124306 68124658 + 5 NA Intergenic Intergenic 69131 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 1881 chr16 55521214 55522266 + 5 NA intron (NM_017839, intron 1 of 13) L1ME2|LINE|L1 12668 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 809-16 chr17 63284486 63284892 + 5 NA intron (NM_025185, intron 8 of 25) L1MEc|LINE|L1 155578 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 1208-13 chr22 27007120 27007476 + 5 NA Intergenic L2c|LINE|L2 53220 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 731-26 chr13 93019994 93020237 + 5 NA Intergenic Intergenic -25226 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 886-18 chr2 56487143 56487476 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger -301539 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 651-40 chr14 72595253 72595465 + 5 NA Intergenic Intergenic 78539 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 1031-10 chr2 59757301 59757666 + 5 NA Intergenic Intergenic 539775 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 1438 chr16 50416533 50417235 + 5 NA Intergenic L1MB4|LINE|L1 -21751 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 771-24 chr14 53490196 53490455 + 5 NA Intergenic Intergenic 336971 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 649-52 chr2 100445723 100446041 + 5 NA Intergenic L1MDa|LINE|L1 -24600 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 754-40 chr2 67571937 67572261 + 5 NA Intergenic Intergenic 174766 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 783-76 chr8 68401236 68401532 + 5 NA intron (NR_146187, intron 1 of 13) L1PB4|LINE|L1 -69893 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 902-13 chr14 60413152 60413446 + 5 NA Intergenic L1MB3|LINE|L1 72764 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 941-7 chr12 21139236 21139659 + 5 NA intron (NM_006446, intron 1 of 14) intron (NM_006446, intron 1 of 14) 8253 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 1213-14 chr8 139734188 139734692 + 5 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -31317 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 978-17 chr6 40077697 40078019 + 5 NA Intergenic Intergenic -143396 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 684-7 chr1 115122751 115122940 + 5 NA Intergenic L1M4|LINE|L1 -33342 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 1997 chr8 134238310 134238951 + 5 NA Intergenic L1MD2|LINE|L1 352134 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 507-142 chr2 191189393 191189672 + 5 NA Intergenic Intergenic -37936 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 1245-6 chr6 56173501 56173957 + 5 NA intron (NM_030820, intron 3 of 29) L1MB1|LINE|L1 73851 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 1290-6 chr7 6664454 6664932 + 5 NA Intergenic Intergenic 27375 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 990-9 chr15 101584895 101585296 + 5 NA Intergenic L1MD1|LINE|L1 29244 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 1324-7 chr7 131886015 131886558 + 5 NA Intergenic Intergenic -23934 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 676-9 chr1 164301126 164301330 + 5 NA Intergenic Intergenic -258132 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 651-101 chr5 123940859 123941058 + 5 NA Intergenic Intergenic 395541 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 860-35 chr5 4232254 4232642 + 5 NA Intergenic Intergenic -541033 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 902-17 chr19 28813394 28813751 + 5 NA Intergenic L1MD|LINE|L1 -85878 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 1505-5 chr8 114974433 114975033 + 5 NA Intergenic Intergenic 693280 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 598-18 chr10 26360417 26360598 + 5 NA Intergenic Intergenic -77834 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 1206 chr1 61564762 61565125 + 5 NA Intergenic MSTB|LTR|ERVL-MaLR -89299 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 1286-6 chr2 125141534 125142067 + 5 NA Intergenic Intergenic 976185 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 1151-2 chr10 55480015 55480363 + 5 NA intron (NM_001354404, intron 2 of 34) L1PA13|LINE|L1 -118853 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 925-2 chr1 86176664 86176991 + 5 NA Intergenic Intergenic -19843 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 691-86 chr8 87932798 87933000 + 5 NA Intergenic L2|LINE|L2 -58884 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 754 chr1 147380307 147380471 + 5 NA Intergenic Tigger3b|DNA|TcMar-Tigger 137247 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 540-99 chr17 72217226 72217554 + 5 NA Intergenic Intergenic 96370 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 915-18 chr3 99391739 99392007 + 5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -246721 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 1106-11 chr8 116482138 116482649 + 5 NA Intergenic Intergenic -157334 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 1955-2 chr3 38433669 38434398 + 5 NA Intergenic THE1C|LTR|ERVL-MaLR -19857 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 1045-19 chr5 174462199 174462584 + 5 NA intron (NR_125806, intron 2 of 5) L1MC1|LINE|L1 126037 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 455-254 chr7 29906115 29906265 + 5 NA intron (NM_001080529, intron 8 of 8) L1MB3|LINE|L1 83611 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 891-39 chr8 58361680 58361946 + 5 NA Intergenic L1MA6|LINE|L1 -49451 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 848-26 chr20 28495304 28495533 + 5 NA Intergenic ALR/Alpha|Satellite|centr 107247 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 887-3 chr10 52587483 52587837 + 5 NA intron (NR_155748, intron 1 of 2) L1MA3|LINE|L1 -117127 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 708-80 chr8 114433768 114434085 + 5 NA Intergenic Intergenic -996987 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 754-6 chr10 44073467 44073698 + 5 NA Intergenic L1MD2|LINE|L1 161180 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 525-50 chr12 5132745 5132904 + 5 NA Intergenic Intergenic 88945 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 1123-2 chr1 49114169 49114616 + 5 NA intron (NM_001323575, intron 4 of 12) Tigger1|DNA|TcMar-Tigger -143019 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 1111-9 chr5 23395927 23396333 + 5 NA Intergenic Intergenic -111479 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 844-13 chr12 37759990 37760283 + 5 NA Intergenic ALR/Alpha|Satellite|centr -556638 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 716-7 chr1 231875497 231875770 + 5 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -50201 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 686-74 chr7 46870823 46871032 + 5 NA Intergenic MLT1D|LTR|ERVL-MaLR -173805 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 450-50 chr11 77747041 77747181 + 5 NA exon (NM_016578, exon 3 of 16) exon (NM_016578, exon 3 of 16) 73723 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 352-341 chr3 180284949 180285019 + 5 NA Intergenic Arthur1|DNA|hAT-Tip100 -129189 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 653-34 chr12 132930057 132930373 + 5 NA intron (NM_183238, intron 4 of 4) AluJr|SINE|Alu 26091 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 895-11 chr15 49562925 49563197 + 5 NA intron (NM_001330293, intron 8 of 10) L1PA16|LINE|L1 57757 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 957-25 chr5 12828251 12828481 + 5 NA Intergenic L1ME2|LINE|L1 160507 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 654-70 chr2 172409434 172409651 + 5 NA Intergenic Intergenic -17794 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 1404 chr1 110740428 110740998 + 5 NA Intergenic Intergenic -65773 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 786-3 chr1 172635220 172635409 + 5 NA Intergenic AluSx1|SINE|Alu -23694 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 323-98 chr11 111726051 111726130 + 5 NA TTS (NM_181700) TTS (NM_181700) 40299 NM_001177562 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 811-12 chr12 56866755 56867156 + 5 NA Intergenic MER101-int|LTR|ERV1 67453 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 1030-3 chr1 116144280 116144746 + 5 NA Intergenic L1ME3D|LINE|L1 32758 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 1053-10 chr19 37402123 37402643 + 5 NA Intergenic Intergenic 31284 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 1434-2 chr12 103566183 103566775 + 5 NA Intergenic L1PA17|LINE|L1 18685 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LINC02401 - long intergenic non-protein coding RNA 2401 ncRNA 804-63 chr7 30873887 30874151 + 5 NA intron (NR_037598, intron 16 of 19) intron (NR_037598, intron 16 of 19) -37675 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 547-252 chr8 132508453 132508655 + 5 NA Intergenic ERVL-E-int|LTR|ERVL -27459 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 684-63 chr20 14640704 14641092 + 5 NA intron (NM_001351663, intron 4 of 17) Tigger1|DNA|TcMar-Tigger 86514 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 2217 chr6 40126092 40127073 + 5 NA Intergenic Intergenic -192120 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1051-13 chr5 53828984 53829372 + 5 NA Intergenic Intergenic -9496 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 651-29 chr12 50915437 50915657 + 5 NA Intergenic MER61-int|LTR|ERV1 -9468 NM_014033 25840 Hs.711113 NM_014033 ENSG00000185432 METTL7A AAM-B|AAMB methyltransferase like 7A protein-coding 851-24 chr2 155795205 155795383 + 5 NA Intergenic THE1D-int|LTR|ERVL-MaLR 459637 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 835-30 chr2 121160067 121160364 + 5 NA Intergenic Intergenic 124987 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 725-31 chr19 36814370 36814532 + 5 NA intron (NR_040028, intron 2 of 3) L1MDa|LINE|L1 16888 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 1177-3 chr12 124067199 124067683 + 5 NA intron (NM_001347902, intron 2 of 4) AluSg4|SINE|Alu 94226 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 1672-6 chr8 122015949 122016719 + 5 NA Intergenic Intergenic -374894 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 747-51 chr5 31348064 31348334 + 5 NA Intergenic Intergenic 154513 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1108-10 chr19 52471767 52472220 + 5 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 18440 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 1046-13 chr20 52292108 52292627 + 5 NA Intergenic Intergenic -100382 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 1016-23 chr7 92979413 92979785 + 5 NA Intergenic L1M4|LINE|L1 138380 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 709-92 chr8 125020014 125020302 + 5 NA intron (NM_003129, intron 9 of 10) intron (NM_003129, intron 9 of 10) 21653 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 743-67 chr5 93480374 93480526 + 5 NA intron (NR_021491, intron 4 of 5) L1MB5|LINE|L1 90893 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 1195-4 chr12 33039762 33040253 + 5 NA Intergenic L1ME2z|LINE|L1 -143161 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 892-22 chr2 199540312 199540758 + 5 NA Intergenic Intergenic -67533 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 1484-2 chr2 109443265 109443877 + 5 NA intron (NM_001099289, intron 7 of 9) L1MEc|LINE|L1 -129946 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 701-58 chr22 27342948 27343201 + 5 NA Intergenic L1ME1|LINE|L1 32423 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 975-12 chr2 71652470 71652781 + 5 NA intron (NM_001130985, intron 41 of 54) intron (NM_001130985, intron 41 of 54) 185926 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 1032-13 chr21 23636586 23636932 + 5 NA Intergenic L1MA4|LINE|L1 -251924 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 878-41 chr6 38313307 38313505 + 5 NA intron (NM_052893, intron 8 of 11) L1MA3|LINE|L1 -168190 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 1223-8 chr2 102548483 102549008 + 5 NA Intergenic ERVL-E-int|LTR|ERVL -70808 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 980-11 chr20 4688884 4689262 + 5 NA intron (NM_001080123, intron 1 of 1) intron (NM_001080123, intron 1 of 1) 2617 NM_183079 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 926-20 chr3 106078411 106078814 + 5 NA Intergenic Intergenic -209211 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 1253-7 chr3 159340413 159340869 + 5 NA intron (NM_001197108, intron 1 of 6) L1MCc|LINE|L1 57995 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 622-71 chr2 198131164 198131416 + 5 NA intron (NM_006226, intron 5 of 5) intron (NM_006226, intron 5 of 5) 243807 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 881-13 chr16 52639266 52639566 + 5 NA Intergenic Intergenic -32441 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 648-148 chr8 121241691 121241834 + 5 NA Intergenic MER96B|DNA|hAT-Tip100 -397584 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 726-43 chr2 88036133 88036334 + 5 NA intron (NM_016618, intron 2 of 3) intron (NM_016618, intron 2 of 3) 19550 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 614-126 chr8 40666484 40666695 + 5 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) 231237 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 998-2 chr1 217893919 217894302 + 5 NA intron (NR_048550, intron 1 of 3) LTR78|LTR|ERV1 1210 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 1578-4 chr8 130398171 130398931 + 5 NA intron (NM_001247996, intron 2 of 30) (TAG)n|Simple_repeat|Simple_repeat 45109 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 914-31 chr9 34429240 34429594 + 5 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) 29153 NM_147202 203259 Hs.493771 NM_147202 ENSG00000164970 FAM219A C9orf25 family with sequence similarity 219 member A protein-coding 877-16 chr2 157283732 157284033 + 5 NA intron (NM_001329868, intron 2 of 10) MIRb|SINE|MIR 26177 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 860-17 chr16 58452863 58453125 + 5 NA Intergenic Intergenic -10651 NM_020465 65009 Hs.322430 NM_020465 ENSG00000103034 NDRG4 BDM1|SMAP-8|SMAP8 NDRG family member 4 protein-coding 926-9 chr15 81603225 81603719 + 5 NA Intergenic Arthur1|DNA|hAT-Tip100 -229259 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 785-36 chr3 134757342 134757572 + 5 NA Intergenic Intergenic -37803 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 550-179 chr5 60754155 60754317 + 5 NA 3' UTR (NM_001297618, exon 9 of 9) 3' UTR (NM_001297618, exon 9 of 9) -54070 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 852-18 chr15 58297059 58297430 + 5 NA Intergenic L1ME3D|LINE|L1 -134747 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 740-32 chr17 19664482 19664665 + 5 NA intron (NM_001369136, intron 8 of 11) intron (NM_001369136, intron 8 of 11) 15822 NM_001369139 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 749-57 chr2 215975060 215975237 + 5 NA intron (NM_018000, intron 2 of 4) intron (NM_018000, intron 2 of 4) 38403 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 586-166 chr9 87672586 87672732 + 5 NA intron (NM_004938, intron 19 of 25) intron (NM_004938, intron 19 of 25) -53460 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 1128-7 chr14 62888084 62888348 + 5 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 157242 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 896-12 chr16 8540235 8540586 + 5 NA intron (NM_001290098, intron 2 of 2) MIR|SINE|MIR 49428 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 589-23 chr12 20293955 20294146 + 5 NA Intergenic L1PA15|LINE|L1 -75195 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 1800-2 chr8 126597110 126598023 + 5 NA Intergenic Intergenic -39088 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 908-34 chr5 2954994 2955234 + 5 NA Intergenic L1MA5|LINE|L1 37260 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 856-18 chr15 27402322 27402614 + 5 NA intron (NM_001270873, intron 5 of 5) L1MEg|LINE|L1 -241149 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 1111-7 chr2 104017159 104017653 + 5 NA Intergenic Intergenic 390926 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 728-29 chr14 25663854 25664113 + 5 NA Intergenic Intergenic -613686 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 1402-3 chr2 183907024 183907568 + 5 NA Intergenic Intergenic -471679 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 1801 chr2 57933621 57934316 + 5 NA intron (NM_001288838, intron 1 of 15) L1MA9|LINE|L1 26317 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 667-75 chr4 47259434 47259649 + 5 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 204161 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 1143-3 chr10 58902274 58902743 + 5 NA Intergenic Intergenic -97010 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 820-2 chr10 8357585 8357943 + 5 NA Intergenic Intergenic -89459 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 935-44 chrX 10102527 10102964 + 5 NA intron (NM_015691, intron 8 of 22) Charlie18a|DNA|hAT-Charlie -54200 NM_001256944 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 668-5 chr1 176342273 176342551 + 5 NA Intergenic Charlie10|DNA|hAT-Charlie -120763 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 1066-19 chr8 87122795 87123217 + 5 NA intron (NM_173538, intron 4 of 10) L1MA7|LINE|L1 256591 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1317-6 chr4 70578468 70578967 + 5 NA Intergenic Intergenic -13539 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 732 chr1 112405614 112405819 + 5 NA intron (NM_018704, intron 1 of 5) intron (NM_018704, intron 1 of 5) 9502 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 2159 chr8 129013454 129014324 + 5 NA Intergenic L1PREC2|LINE|L1 -47888 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 982-12 chr13 78211475 78211728 + 5 NA intron (NR_047001, intron 2 of 5) intron (NR_047001, intron 2 of 5) 156746 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 831-37 chr5 49601068 49601334 + 5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 840087 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1557-2 chr13 93018109 93018807 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -26883 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 828-30 chr3 5620940 5621245 + 5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -370837 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 1899 chr10 96177937 96178570 + 5 NA intron (NR_138482, intron 3 of 4) L1MEf|LINE|L1 47631 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 574-178 chr8 78141716 78141934 + 5 NA Intergenic MER47A|DNA|TcMar-Tigger -374515 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 1814 chr11 108436176 108436775 + 5 NA intron (NR_147053, intron 3 of 12) intron (NR_147053, intron 3 of 12) 31054 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 2942 chr16 68563295 68564509 + 5 NA non-coding (NR_130978, exon 5 of 5) non-coding (NR_130978, exon 5 of 5) 24611 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 1318 chr3 88793707 88794347 + 5 NA Intergenic L1MA2|LINE|L1 -313594 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 784-54 chr6 40198931 40199234 + 5 NA Intergenic L1MA9|LINE|L1 156924 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 1481 chr15 70594416 70595067 + 5 NA Intergenic L1MEd|LINE|L1 -8135 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 1472 chr2 56698560 56699092 + 5 NA Intergenic Intergenic -513056 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 3029 chr19 27612753 27614196 + 5 NA Intergenic ALR/Alpha|Satellite|centr -179957 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1219-8 chr7 63085487 63085837 + 5 NA Intergenic Intergenic 218394 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1237-3 chr17 7068629 7069174 + 5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 11350 NM_182906 10462 Hs.54403 NM_006344 ENSG00000132514 CLEC10A CD301|CLECSF13|CLECSF14|HML|HML2|MGL C-type lectin domain containing 10A protein-coding 779-29 chr2 15119060 15119304 + 5 NA Intergenic Intergenic 442152 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1208-14 chr3 94852485 94853000 + 5 NA Intergenic L1M4|LINE|L1 -85521 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 708-75 chr7 36828647 36828844 + 5 NA Intergenic Intergenic 90687 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 493-111 chr17 70982576 70982724 + 5 NA Intergenic Intergenic 219529 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 797-6 chr10 53203472 53203709 + 5 NA Intergenic L1MC1|LINE|L1 -431890 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 1000-21 chr5 151841046 151841403 + 5 NA intron (NM_000171, intron 7 of 8) L1MB7|LINE|L1 -69048 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 1024-22 chr7 9174496 9174769 + 5 NA Intergenic Intergenic -459638 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 506-107 chr16 80315072 80315354 + 5 NA intron (NR_120307, intron 2 of 5) MLT1D|LTR|ERVL-MaLR -225521 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 476-108 chr17 29792091 29792271 + 5 NA intron (NM_033389, intron 2 of 14) AluSx3|SINE|Alu -30749 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 761-59 chr5 178709635 178709876 + 5 NA Intergenic L2c|LINE|L2 20904 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 785-3 chr1 71133643 71133996 + 5 NA intron (NR_046217, intron 2 of 3) L1MA9|LINE|L1 52495 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 548-57 chr12 103135054 103135196 + 5 NA Intergenic L1MA4A|LINE|L1 -16717 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 2305 chr14 62837190 62838378 + 5 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 207674 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 1470-2 chr7 49414874 49415486 + 5 NA Intergenic Intergenic -358458 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 1047-10 chr16 13386135 13386520 + 5 NA Intergenic Intergenic 484729 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 739-15 chr12 75761870 75762085 + 5 NA Intergenic Intergenic -250368 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 437-133 chr2 72591997 72592120 + 5 NA intron (NR_135774, intron 6 of 19) A-rich|Low_complexity|Low_complexity 233975 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 1034-20 chr8 134042325 134042869 + 5 NA Intergenic Intergenic 156101 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1464-6 chr8 130773290 130774004 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger 267262 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 1084-21 chr5 137416029 137416353 + 5 NA intron (NM_004598, intron 2 of 10) L1MEf|LINE|L1 83135 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 951-13 chr2 14840940 14841446 + 5 NA Intergenic L1M3f|LINE|L1 208476 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 1400-2 chr18 13966234 13966803 + 5 NA Intergenic L1MB8|LINE|L1 -50811 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 1148-13 chr7 82181903 82182170 + 5 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 172859 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 844-24 chr17 55646460 55646756 + 5 NA Intergenic MIRb|SINE|MIR 76256 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 1298-2 chr11 97410443 97410881 + 5 NA Intergenic L1M3e|LINE|L1 902237 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 635-92 chr5 141217524 141217864 + 5 NA 3' UTR (NM_018933, exon 1 of 1) 3' UTR (NM_018933, exon 1 of 1) 3775 NM_018933 56123 Hs.283803 NM_018933 ENSG00000187372 PCDHB13 PCDH-BETA13 protocadherin beta 13 protein-coding 820-4 chr10 33795854 33796125 + 5 NA Intergenic AluJo|SINE|Alu -23309 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 976-9 chr17 68609402 68609842 + 5 NA Intergenic L1ME1|LINE|L1 -8255 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 822-26 chr19 46566011 46566331 + 5 NA intron (NM_001370550, intron 1 of 2) MLT2C1|LTR|ERVL 34745 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 806-21 chr16 72434559 72434808 + 5 NA intron (NR_159371, intron 3 of 5) L1MEg|LINE|L1 230287 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 943-26 chr8 60954947 60955418 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 12566 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 791-58 chr5 116333649 116334031 + 5 NA Intergenic L1MC4a|LINE|L1 40730 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 1194-6 chr6 80447152 80447568 + 5 NA Intergenic Intergenic 340689 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 822-9 chr11 118971315 118971504 + 5 NA promoter-TSS (NM_181721).2 promoter-TSS (NM_181721).2 -352 NM_181721 283150 Hs.116679 NM_181721 ENSG00000176302 FOXR1 DLNB13|FOXN5 forkhead box R1 protein-coding 1629 chr10 105994567 105995204 + 5 NA Intergenic Intergenic -145280 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 1372 chr12 14116015 14116697 + 5 NA Intergenic L1MDa|LINE|L1 -136000 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 1242-7 chr19 58165765 58166352 + 5 NA Intergenic Intergenic -15269 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 850-46 chr7 37534961 37535305 + 5 NA Intergenic Intergenic -85807 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 1002-5 chr16 75169000 75169432 + 5 NA intron (NM_001318475, intron 3 of 3) intron (NM_001318475, intron 3 of 3) 20165 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 535-74 chr14 64525494 64525669 + 5 NA TTS (NM_001123329) TTS (NM_001123329) 14787 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 843-34 chr5 135786710 135787160 + 5 NA intron (NM_001349335, intron 3 of 10) SATR2|Satellite|Satellite 16140 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 805-4 chr10 39179572 39179828 + 5 NA Intergenic ALR/Alpha|Satellite|centr 483104 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 766-71 chr8 129796905 129797144 + 5 NA Intergenic L1PBa|LINE|L1 -10400 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 688-65 chr2 72409992 72410151 + 5 NA intron (NM_001321729, intron 18 of 22) L1MB4|LINE|L1 -262209 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 2686 chr5 37959674 37960747 + 5 NA Intergenic L1MEc|LINE|L1 11719 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 862-35 chr8 118310268 118310585 + 5 NA intron (NM_001101676, intron 4 of 4) LTR67B|LTR|ERVL -198607 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 649-73 chr3 126792093 126792226 + 5 NA intron (NM_032343, intron 4 of 7) L1MB3|LINE|L1 87919 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 884-22 chr2 120666877 120667215 + 5 NA Intergenic L1MEd|LINE|L1 -68822 NM_001371271 1202-5 chr2 101670747 101671279 + 5 NA Intergenic Intergenic -26690 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 1307-10 chr9 30415838 30416412 + 5 NA Intergenic L2b|LINE|L2 -7671 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 1310-7 chr8 130734585 130735109 + 5 NA Intergenic U3|snRNA|snRNA -291173 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 1271-8 chr9 96749791 96750326 + 5 NA Intergenic L1MD2|LINE|L1 24237 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 722-15 chr10 76261499 76261765 + 5 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 478871 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 1449-2 chr4 119827243 119827985 + 5 NA Intergenic L1M4|LINE|L1 -23099 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 1493 chr2 95190124 95190666 + 5 NA Intergenic Intergenic 24586 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 368-456 chr8 91375866 91375959 + 5 NA intron (NM_134266, intron 15 of 18) L1PA17|LINE|L1 126593 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 416-337 chr8 106164992 106165186 + 5 NA Intergenic Intergenic -104586 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 883-24 chr3 55381008 55381474 + 5 NA Intergenic L1ME3E|LINE|L1 100157 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 759-66 chr7 42131003 42131279 + 5 NA intron (NM_000168, intron 3 of 14) HAL1ME|LINE|L1 106068 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 1452-2 chr10 43492454 43493106 + 5 NA Intergenic L1MA9|LINE|L1 55669 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 763-8 chr10 90132946 90133164 + 5 NA Intergenic L1MB4|LINE|L1 -175682 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 452-75 chr14 40168062 40168311 + 5 NA Intergenic LTR27|LTR|ERV1 -735686 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 921-24 chr8 36521628 36521823 + 5 NA Intergenic Intergenic -262649 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 1118-6 chr18 61867941 61868279 + 5 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 24897 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 646-23 chr11 43179820 43179962 + 5 NA Intergenic LTR78|LTR|ERV1 89478 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 868-17 chr19 52828334 52828548 + 5 NA Intergenic AluSz6|SINE|Alu -6808 NM_001369763 7576 Hs.732407 NM_006969 ENSG00000198538 ZNF28 KOX24 zinc finger protein 28 protein-coding 937-17 chr2 63165333 63165756 + 5 NA intron (NR_148704, intron 16 of 18) L1MC4|LINE|L1 -46002 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 1389-4 chr7 62958471 62958939 + 5 NA Intergenic ALR/Alpha|Satellite|centr 345351 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 844-49 chr4 163603586 163603914 + 5 NA intron (NM_017923, intron 1 of 3) intron (NM_017923, intron 1 of 3) 9784 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 649-60 chr20 10140302 10140556 + 5 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -78369 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 1101-5 chr18 33509759 33510044 + 5 NA Intergenic L1M1|LINE|L1 -68318 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 1040-7 chr17 52821806 52822136 + 5 NA Intergenic Intergenic -40150 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 1935 chr10 75570945 75571863 + 5 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 18946 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 1212-3 chr17 70981680 70982283 + 5 NA Intergenic Intergenic 220198 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 900-10 chr14 52460519 52460826 + 5 NA intron (NM_001160047, intron 16 of 20) MER57A-int|LTR|ERV1 91833 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 1112 chr1 67962538 67963057 + 5 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 88834 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 1080-19 chr22_KI270736v1_random 181271 181802 + 5 NA NA Intergenic NA NA 1141-11 chr8 114903277 114903681 + 5 NA Intergenic L2|LINE|L2 764534 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 809-52 chr8 84515245 84515664 + 5 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 99970 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 613-148 chr9 92494200 92494372 + 5 NA intron (NM_001197296, intron 9 of 9) intron (NM_001197296, intron 9 of 9) -11780 NM_017680 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 742-70 chr7 4378079 4378290 + 5 NA Intergenic Intergenic -243347 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 829-20 chr2 234765905 234766148 + 5 NA Intergenic Intergenic 83358 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 673-126 chr8 139054679 139054876 + 5 NA Intergenic L1ME4a|LINE|L1 -140736 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 1031-6 chr17 52534195 52534534 + 5 NA intron (NR_146898, intron 2 of 3) intron (NR_146898, intron 2 of 3) 143842 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 774-30 chr16 52777897 52778225 + 5 NA Intergenic L1ME4b|LINE|L1 -171086 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 787-47 chr7 64925973 64926324 + 5 NA intron (NR_003099, intron 4 of 4) L1MB3|LINE|L1 22906 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 463-9 chr1 60447096 60447201 + 5 NA Intergenic L1ME2|LINE|L1 175537 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 732-18 chr11 41711059 41711380 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -3349 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 998-21 chr8 136502115 136502325 + 5 NA Intergenic L1M5|LINE|L1 -28578 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1073-8 chr2 116280866 116281323 + 5 NA Intergenic L1PA15-16|LINE|L1 937279 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1521-5 chr3 134120952 134121537 + 5 NA Intergenic L1PB4|LINE|L1 -63596 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 852-21 chr19 5504715 5504954 + 5 NA Intergenic Intergenic 49417 NM_181710 148066 Hs.126496 NM_181710 ENSG00000105428 ZNRF4 RNF204|SPERIZIN|Ssrzf1|spzn zinc and ring finger 4 protein-coding 643-10 chr10 31560509 31560755 + 5 NA Intergenic L1MA7|LINE|L1 -160877 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 743-63 chr5 22777315 22777492 + 5 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 75941 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 871-19 chr3 6096816 6097047 + 5 NA Intergenic Intergenic 708518 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 857-35 chr3 4047605 4047911 + 5 NA Intergenic Intergenic -246883 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 1297-3 chr14 51908909 51909365 + 5 NA intron (NM_001243773, intron 2 of 3) L1ME4b|LINE|L1 9434 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 1009-8 chr15 98831021 98831370 + 5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 46769 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 753-64 chr9 71132692 71132936 + 5 NA intron (NM_001366143, intron 1 of 25) L1ME4a|LINE|L1 -11193 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 740-76 chr8 121465585 121465836 + 5 NA Intergenic Intergenic -173636 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 617-93 chr4 59485565 59485764 + 5 NA Intergenic L1MC5|LINE|L1 472091 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1407-5 chr6 65073176 65073665 + 5 NA intron (NM_001292009, intron 12 of 43) HAL1M8|LINE|L1 -227998 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 617-131 chr8 76175042 76175237 + 5 NA Intergenic AluSx|SINE|Alu -231515 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 1754-2 chr2 19795909 19796843 + 5 NA Intergenic Intergenic -72478 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 1099-11 chr2 5711727 5711961 + 5 NA Intergenic Intergenic 19460 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 504-45 chr11 99913125 99913318 + 5 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 357076 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 917-7 chr14 79155273 79155584 + 5 NA intron (NR_073547, intron 14 of 20) MER113|DNA|hAT-Charlie -44554 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 738-21 chr15 67686120 67686348 + 5 NA intron (NM_001206804, intron 13 of 21) L1MEc|LINE|L1 137140 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 873-5 chr10 97935666 97936175 + 5 NA intron (NM_001206528, intron 3 of 14) intron (NM_001206528, intron 3 of 14) -60023 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 644-110 chr9 90110281 90110608 + 5 NA Intergenic Intergenic -68945 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 790-15 chr16 50407666 50407941 + 5 NA Intergenic Intergenic -12670 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 1256-5 chr4 38581270 38581825 + 5 NA Intergenic Intergenic 17544 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 1044-18 chr5 16121018 16121436 + 5 NA intron (NM_001102562, intron 2 of 3) L2a|LINE|L2 58564 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 733-44 chr20 42357072 42357349 + 5 NA intron (NM_133170, intron 9 of 31) MER58A|DNA|hAT-Charlie -328273 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 535-51 chr12 52589695 52589899 + 5 NA intron (NM_001146226, intron 5 of 7) intron (NM_001146226, intron 5 of 7) 11666 NM_080747 140807 Hs.662013 NM_080747 ENSG00000170486 KRT72 K6IRS2|K6irs|KRT6|KRT6IRS2 keratin 72 protein-coding 705-24 chr12 70209280 70209553 + 5 NA Intergenic L1MA9|LINE|L1 -33614 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 383-179 chr2 33901251 33901484 + 5 NA intron (NR_126403, intron 2 of 5) L1MCa|LINE|L1 -165859 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 923-3 chr12 46173503 46173872 + 5 NA Intergenic Intergenic 92829 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 1021-5 chr11 120080442 120080674 + 5 NA Intergenic L2a|LINE|L2 48295 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 705-97 chr8 48227459 48227794 + 5 NA Intergenic HUERS-P3b-int|LTR|ERV1 219195 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 760-65 chr6 35536460 35536659 + 5 NA Intergenic ERVL-E-int|LTR|ERVL -23663 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 934-30 chr8 13761016 13761418 + 5 NA Intergenic L1MA9|LINE|L1 131527 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 586-129 chr6 37041614 37041819 + 5 NA Intergenic MLT1B|LTR|ERVL-MaLR 36061 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 771-18 chr12 58420226 58420473 + 5 NA Intergenic Intergenic -171353 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 1627-2 chr10 72977751 72978359 + 5 NA Intergenic L1MA5A|LINE|L1 -23249 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 1048-25 chr8 102213841 102214110 + 5 NA intron (NM_001172477, intron 7 of 8) intron (NM_001172477, intron 7 of 8) 24856 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 647-75 chr4 107077629 107077794 + 5 NA Intergenic Intergenic -41398 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 782-24 chr15 54670026 54670263 + 5 NA Intergenic L1PB1|LINE|L1 -386603 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 837-16 chr2 74736133 74736421 + 5 NA Intergenic HAL1|LINE|L1 82030 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 1185-3 chr2 95291441 95291944 + 5 NA TTS (NM_001165977) TTS (NM_001165977) -5655 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 1367-2 chr6 38472957 38473594 + 5 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -8321 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 1254-4 chr21 24079185 24079665 + 5 NA Intergenic L1M2|LINE|L1 241952 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 1172-6 chr5 114576804 114577386 + 5 NA intron (NR_134282, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 1054 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 814-45 chr4 58568874 58569223 + 5 NA Intergenic Intergenic -32720 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 1151 chr10 9286785 9287444 + 5 NA TTS (NR_108039) TTS (NR_108039) 8479 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 1207-13 chr8 125710796 125711333 + 5 NA Intergenic Intergenic 240133 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 785-45 chr5 21254977 21255322 + 5 NA Intergenic Intergenic -204331 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 904-28 chr21 25166779 25167278 + 5 NA Intergenic THE1B|LTR|ERVL-MaLR 264673 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 798-27 chr2 68494329 68494566 + 5 NA intron (NM_173545, intron 2 of 9) MSTA|LTR|ERVL-MaLR 26862 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 770-22 chr16 3204422 3204960 + 5 NA exon (NM_001370641, exon 5 of 5) exon (NM_001370641, exon 5 of 5) -10871 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 1383-3 chr19 27606444 27606949 + 5 NA Intergenic ALR/Alpha|Satellite|centr -186735 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1050 chr1 115278063 115278487 + 5 NA Intergenic Intergenic -4759 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 659-95 chr6 66637174 66637335 + 5 NA Intergenic Intergenic 849375 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 2510 chr14 54824022 54825272 + 5 NA Intergenic L1M4c|LINE|L1 53546 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 1035-12 chr5 36104062 36104457 + 5 NA intron (NM_001007527, intron 17 of 17) intron (NM_001007527, intron 17 of 17) -37377 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 801-52 chr6 120268976 120269288 + 5 NA Intergenic Intergenic 253953 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 883-17 chr19 58124027 58124383 + 5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -5779 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 908-19 chr2 84559015 84559285 + 5 NA intron (NM_001370, intron 11 of 76) L1MC4|LINE|L1 42695 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 594-114 chr5 45435567 45435788 + 5 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 260703 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 890-38 chr8 74319962 74320290 + 5 NA intron (NM_020647, intron 1 of 5) intron (NM_020647, intron 1 of 5) 1235 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 1084-17 chr5 38766345 38766815 + 5 NA intron (NR_109951, intron 2 of 3) L2|LINE|L2 -46307 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 648-36 chr14 45600355 45600571 + 5 NA Intergenic Intergenic 115139 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 851-26 chr2 239712544 239712840 + 5 NA Intergenic MLT1D|LTR|ERVL-MaLR -50168 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 926-11 chr19 27631527 27631868 + 5 NA Intergenic ALR/Alpha|Satellite|centr -161734 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 585-95 chr3 16784057 16784257 + 5 NA Intergenic Intergenic -100798 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 842-48 chr7 104747755 104748003 + 5 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 56213 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 965-21 chr7 62810601 62810907 + 5 NA Intergenic ALR/Alpha|Satellite|centr 493302 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 745-51 chr5 3936341 3936555 + 5 NA Intergenic L1MC1|LINE|L1 340616 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 1123-4 chr12 4000602 4001033 + 5 NA Intergenic L2c|LINE|L2 -127369 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 1290-4 chr5 27207849 27208290 + 5 NA Intergenic Intergenic -169483 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 812-12 chr12 20303594 20303889 + 5 NA Intergenic L3|LINE|CR1 -65504 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 1273-10 chr8 84747387 84747748 + 5 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 41640 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 614-90 chr4 48645723 48645964 + 5 NA intron (NM_015030, intron 3 of 63) intron (NM_015030, intron 3 of 63) 134456 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 776-35 chr3 155154304 155154529 + 5 NA intron (NM_000902, intron 16 of 22) MIR3|SINE|MIR 74405 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 3745 chr8 126598176 126599635 + 5 NA Intergenic L1MD2|LINE|L1 -40427 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 457-37 chr11 76650453 76650705 + 5 NA Intergenic L1M5|LINE|L1 19359 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 1017-7 chr15 39205158 39205541 + 5 NA Intergenic Intergenic -45320 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 496-71 chr13 102189358 102189569 + 5 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) 121223 NM_001321934 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 1834 chr5 35783113 35784049 + 5 NA intron (NM_024867, intron 30 of 36) intron (NM_024867, intron 30 of 36) -73310 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 1184-8 chr9 134609146 134609742 + 5 NA Intergenic L1MC1|LINE|L1 -32361 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 561-107 chr2 211319159 211319340 + 5 NA Intergenic Intergenic 701678 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 948-22 chr2 189120595 189120921 + 5 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) 12353 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 648-73 chr2 114814258 114814501 + 5 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 19169 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 1314 chr12 41173206 41173597 + 5 NA Intergenic Intergenic -14919 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 485-188 chr3 106071225 106071403 + 5 NA Intergenic Intergenic -201913 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 1016-10 chr2 114898805 114899230 + 5 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -65469 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 1314-3 chr19 52149122 52149660 + 5 NA Intergenic MER4-int|LTR|ERV1 -9453 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 1403-6 chr7 54621375 54621971 + 5 NA Intergenic Intergenic 64703 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 526-103 chr18 14071286 14071551 + 5 NA Intergenic Intergenic 61017 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 1730-2 chr10 54301890 54302505 + 5 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -184033 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 957-3 chr10 67187299 67187567 + 5 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 175167 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 706-26 chr15 33413855 33414125 + 5 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 103023 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 1450-2 chr2 38220070 38220718 + 5 NA Intergenic L1MB8|LINE|L1 89289 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 496-280 chr8 67936268 67936549 + 5 NA Intergenic L1M5|LINE|L1 -15638 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 929-31 chr6 48841696 48842124 + 5 NA Intergenic L1PREC2|LINE|L1 621343 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 775-49 chr2 179514508 179514757 + 5 NA intron (NR_104234, intron 6 of 12) L1ME4b|LINE|L1 47956 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 2500 chr8 138051489 138052488 + 5 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 31557 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 992-16 chr5 155568842 155569210 + 5 NA Intergenic L1PA16|LINE|L1 555271 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 1131 chr1 90416488 90417026 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger -240993 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 909-18 chr20 40229693 40230046 + 5 NA Intergenic Intergenic 225408 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 840-33 chr22 22961645 22961836 + 5 NA Intergenic L1MEc|LINE|L1 73924 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 720-55 chr20 52287193 52287376 + 5 NA Intergenic Intergenic -95299 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 1118-5 chr14 87496484 87497026 + 5 NA Intergenic MIR|SINE|MIR 158539 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 570-195 chr8 69295331 69295458 + 5 NA Intergenic Intergenic 152850 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 685-70 chr3 182385581 182385845 + 5 NA Intergenic Intergenic 100649 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 742-80 chr8 124652825 124653013 + 5 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 75554 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 1525-2 chr6 96658803 96659132 + 5 NA Intergenic L1PA16|LINE|L1 95842 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 1061-16 chr8 138421996 138422345 + 5 NA intron (NM_001362965, intron 1 of 19) L1PA15|LINE|L1 75091 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 715-26 chr19 28778458 28778670 + 5 NA Intergenic L1P4a|LINE|L1 -50870 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 443-145 chr2 49869304 49869472 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger 104815 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 531-118 chr2 135398926 135399084 + 5 NA intron (NM_001286569, intron 2 of 21) intron (NM_001286569, intron 2 of 21) 131580 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 1081-11 chr22 34827077 34827561 + 5 NA intron (NR_138042, intron 3 of 4) MER20B|DNA|hAT-Charlie 170597 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1101-12 chr4 77962440 77962795 + 5 NA Intergenic MER113A|DNA|hAT-Charlie -94706 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 836-8 chr10 10724023 10724212 + 5 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 70797 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 1484 chr19 28667166 28667863 + 5 NA intron (NR_110759, intron 5 of 9) LTR10B|LTR|ERV1 60180 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 733-49 chr3 8162824 8163063 + 5 NA Intergenic Intergenic -146636 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 896-16 chr2 33868839 33869234 + 5 NA intron (NR_126403, intron 2 of 5) L1MB8|LINE|L1 -140819 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 1203-10 chr3 166768566 166768990 + 5 NA Intergenic Intergenic -129905 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 863-52 chr8 129242097 129242474 + 5 NA Intergenic Intergenic -1045 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 858-12 chr12 13052433 13052811 + 5 NA intron (NM_020853, intron 1 of 12) L1MB2|LINE|L1 8241 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 1030-11 chr14 85475754 85476068 + 5 NA Intergenic Intergenic -54114 NR_144386 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 1407 chr2 11903332 11903806 + 5 NA Intergenic MER66B|LTR|ERV1 -66583 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 1571 chr11 93996381 93996926 + 5 NA Intergenic LOR1-int|LTR|ERV1 -24701 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 1085-11 chr2 218087019 218087482 + 5 NA intron (NR_034176, intron 12 of 13) MER3|DNA|hAT-Charlie 18235 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 983-8 chr2 108011086 108011493 + 5 NA 3' UTR (NM_001305007, exon 9 of 9) 3' UTR (NM_001305007, exon 9 of 9) 24765 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 601-110 chr4 77554690 77554962 + 5 NA intron (NM_006419, intron 1 of 4) L1ME1|LINE|L1 43073 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 789-38 chr5 63374587 63374771 + 5 NA Intergenic Intergenic 587613 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 895-34 chr5 45935319 45935621 + 5 NA Intergenic ALR/Alpha|Satellite|centr -239090 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 783-44 chr2 119498153 119498457 + 5 NA intron (NM_002980, intron 1 of 12) L1MDa|LINE|L1 21851 NR_147846 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 531-114 chr2 81923202 81923412 + 5 NA Intergenic Intergenic -456361 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 673-22 chr11 76935214 76935434 + 5 NA intron (NM_001300955, intron 2 of 9) L1MC4|LINE|L1 74406 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 1426-3 chr4 127750115 127750646 + 5 NA intron (NM_001318467, intron 2 of 6) intron (NM_001318467, intron 2 of 6) 19980 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 768-5 chr10 36771960 36772225 + 5 NA Intergenic Intergenic -353765 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 943-5 chr10 133483859 133484227 + 5 NA Intergenic L1MA4A|LINE|L1 30115 NR_149718 619207 Hs.659384 NM_001033584 ENSG00000214279 SCART1 - scavenger receptor family member expressed on T cells 1 pseudo 794-9 chr10 99044624 99044894 + 5 NA intron (NM_021828, intron 3 of 11) L1PA16|LINE|L1 -120191 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 911-31 chr8 135025244 135025549 + 5 NA Intergenic Intergenic 175461 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 1586-2 chr19 27723233 27724039 + 5 NA Intergenic ALR/Alpha|Satellite|centr -69795 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1078-17 chr8 128349635 128350004 + 5 NA Intergenic L1MA2|LINE|L1 199703 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 795-8 chr1 203095481 203095674 + 5 NA Intergenic L1MEc|LINE|L1 -9565 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 976-7 chr14 62745350 62745673 + 5 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 299947 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 1092-4 chr10 41858168 41858574 + 5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 509674 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1533-6 chr3 117316549 117317198 + 5 NA Intergenic Intergenic 374052 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 750-48 chr3 87754922 87755108 + 5 NA Intergenic L3|LINE|CR1 -37691 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 896-27 chr5 36480513 36480924 + 5 NA Intergenic L1MC5a|LINE|L1 -125637 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 1074-7 chr2 81114110 81114495 + 5 NA Intergenic Intergenic 352644 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1394-2 chr19 27593232 27593796 + 5 NA Intergenic ALR/Alpha|Satellite|centr -199917 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1193 chr11 115447853 115448432 + 5 NA intron (NM_001098517, intron 1 of 8) MIRb|SINE|MIR 51386 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 3146 chr14 44720521 44721601 + 5 NA Intergenic MamGypsy2-I|LTR|Gypsy 78065 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 1373-2 chr10 82755612 82755990 + 5 NA intron (NR_163252, intron 3 of 8) L3|LINE|CR1 -522881 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 793-42 chr5 97906306 97906494 + 5 NA intron (NR_146299, intron 2 of 2) L1MCb|LINE|L1 65642 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 783-69 chr6 149146997 149147319 + 5 NA Intergenic Intergenic -70766 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 936-17 chr2 160639148 160639498 + 5 NA Intergenic HAL1|LINE|L1 -145516 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 907-4 chr1 233951780 233952113 + 5 NA intron (NM_173508, intron 2 of 7) L1M7|LINE|L1 47270 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 568-204 chr8 144569094 144569374 + 5 NA intron (NM_025251, intron 2 of 10) L1ME1|LINE|L1 36461 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 713-43 chr2 148505050 148505313 + 5 NA intron (NM_018328, intron 13 of 14) intron (NM_018328, intron 13 of 14) -139570 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 667-57 chr20 47037386 47037526 + 5 NA intron (NM_172110, intron 5 of 13) MLT1D|LTR|ERVL-MaLR -129511 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 1273-4 chr14 23905121 23905620 + 5 NA Intergenic Charlie2a|DNA|hAT-Charlie -48400 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 927-14 chr5 12143347 12143857 + 5 NA Intergenic L1MEd|LINE|L1 -239156 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 709-8 chr10 72767009 72767157 + 5 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 46054 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 765-45 chr4 43914036 43914252 + 5 NA Intergenic Intergenic -102717 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 512-208 chr5 19755461 19755636 + 5 NA intron (NM_001349559, intron 3 of 12) (TTTTATA)n|Simple_repeat|Simple_repeat 130724 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 1072-10 chr2 31693053 31693516 + 5 NA Intergenic HUERS-P3-int|LTR|ERV1 110696 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 1420-5 chr9 11399886 11400443 + 5 NA Intergenic Intergenic 786958 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 813-10 chr13 58506518 58506684 + 5 NA Intergenic Intergenic -273484 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 1126-11 chr7 7584908 7585232 + 5 NA intron (NM_001370078, intron 4 of 8) intron (NM_001370078, intron 4 of 8) 17044 NM_001370078 54468 Hs.520215 NM_019005 ENSG00000164654 MIOS MIO|Sea4|Yulink meiosis regulator for oocyte development protein-coding 407-294 chr7 51720612 51720723 + 5 NA Intergenic L1MB3|LINE|L1 -327411 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 966-3 chr10 64966800 64967147 + 5 NA Intergenic L1MEd|LINE|L1 -42455 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 692-81 chr5 169082963 169083292 + 5 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 69900 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 744-3 chr1 114507629 114507780 + 5 NA intron (NM_015906, intron 1 of 19) MIRc|SINE|MIR 3499 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 2308 chr10 44702077 44702877 + 5 NA Intergenic L1M4b|LINE|L1 -208839 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 1239-2 chr2 179603734 179604173 + 5 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -18047 NM_001282725 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 787-52 chr8 60148149 60148516 + 5 NA Intergenic Intergenic 133068 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 849-29 chr4 41521815 41522239 + 5 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -16130 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 979-3 chr10 25618090 25618709 + 5 NA Intergenic LTR8B|LTR|ERV1 -33313 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 905-17 chr2 78033861 78034149 + 5 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -54725 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 710-22 chr12 45883376 45883648 + 5 NA intron (NM_152641, intron 16 of 20) intron (NM_152641, intron 16 of 20) 107062 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 634-111 chr4 53091292 53091476 + 5 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 229067 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 793-8 chr10 125383013 125383292 + 5 NA Intergenic L1PA15|LINE|L1 -191219 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 1164-10 chr6 41206981 41207375 + 5 NA Intergenic L1ME5|LINE|L1 -6029 NM_024807 79865 Hs.164797 NM_024807 ENSG00000112195 TREML2 C6orf76|TLT-2|TLT2|dJ238O23.1 triggering receptor expressed on myeloid cells like 2 protein-coding 864-27 chr3 99074989 99075490 + 5 NA Intergenic Intergenic -173544 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 803-57 chr8 65336237 65336436 + 5 NA Intergenic Intergenic -155996 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 1190-10 chr5 162786124 162786448 + 5 NA Intergenic MLT1F1|LTR|ERVL-MaLR -651285 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 612-20 chr10 87943620 87943807 + 5 NA intron (NM_001304718, intron 5 of 8) L1M5|LINE|L1 80088 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 2343-2 chr9 134613660 134614490 + 5 NA Intergenic L1MEg|LINE|L1 -27730 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 922-28 chr5 144630290 144630580 + 5 NA Intergenic L1MA1|LINE|L1 425044 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 1679 chr8 29324930 29325482 + 5 NA Intergenic SATR2|Satellite|Satellite 23599 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 1817 chr4 54467944 54468667 + 5 NA Intergenic L1MCa|LINE|L1 135413 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 749-71 chr4 57538232 57538509 + 5 NA Intergenic Intergenic 112498 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 917-22 chr7 13478475 13478823 + 5 NA Intergenic Intergenic 507865 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 3264 chr19 52156023 52157500 + 5 NA exon (NM_001102657, exon 5 of 5) exon (NM_001102657, exon 5 of 5) 14860 NM_001102657 162962 Hs.631584 NM_001102657 ENSG00000196267 ZNF836 - zinc finger protein 836 protein-coding 1311 chr10 123717764 123718199 + 5 NA Intergenic Intergenic 51626 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 766-56 chr5 179017395 179017666 + 5 NA Intergenic L1MEc|LINE|L1 -6274 NM_001353372 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 1286-10 chr8 136390929 136391443 + 5 NA Intergenic Intergenic -139612 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 670-63 chr2 100533075 100533296 + 5 NA Intergenic Intergenic -29808 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 2091 chr10 37894803 37895641 + 5 NA Intergenic Intergenic -37119 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 1236-2 chr17 73669248 73669804 + 5 NA Intergenic L1ME2|LINE|L1 -25081 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 1551-3 chr7 130628524 130629145 + 5 NA intron (NM_001290033, intron 5 of 19) AluJr4|SINE|Alu 39914 NM_012133 26958 Hs.6421 NM_012133 ENSG00000158623 COPG2 2-COP|gamma-2-COP coatomer protein complex subunit gamma 2 protein-coding 461-291 chr9 72926820 72926945 + 5 NA intron (NM_000689, intron 5 of 12) intron (NM_000689, intron 5 of 12) 26171 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 816-4 chr11 115730353 115730669 + 5 NA Intergenic MIRb|SINE|MIR 4251 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 958 chr1 38397869 38398321 + 5 NA Intergenic L1M1|LINE|L1 -77101 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 757-27 chr2 10952843 10953025 + 5 NA Intergenic Intergenic 41000 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 1071-7 chr17 52327743 52328224 + 5 NA Intergenic Intergenic -62539 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 926-21 chr3 126426942 126427300 + 5 NA intron (NM_182628, intron 13 of 16) L1MC1|LINE|L1 32212 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 830-13 chr12 47442284 47442594 + 5 NA Intergenic Intergenic 27431 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 1149-8 chr4 100726187 100726720 + 5 NA Intergenic MLT2B2|LTR|ERVL -51340 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 1140-7 chr2 96939446 96939880 + 5 NA intron (NM_001122646, intron 8 of 16) intron (NM_001122646, intron 8 of 16) 20557 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 993-20 chr6 68593268 68593700 + 5 NA Intergenic L1PA15|LINE|L1 40840 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 1075-5 chr14 66948304 66948621 + 5 NA intron (NM_020806, intron 8 of 22) L3|LINE|CR1 -240978 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 808-43 chr5 52301837 52302094 + 5 NA Intergenic Intergenic 293934 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 1554-5 chr20 41959066 41959700 + 5 NA Intergenic LTR81A|LTR|Gypsy -341006 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 876-4 chr1 240138368 240138766 + 5 NA intron (NM_020066, intron 2 of 17) AluSz|SINE|Alu 46684 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 1402-2 chr14_GL000225v1_random 81835 82273 + 5 NA NA BSR/Beta|Satellite|Satellite NA NA 918-3 chr10 112866617 112866949 + 5 NA Intergenic L1MB5|LINE|L1 43287 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 1206-3 chr14 82750201 82750660 + 5 NA Intergenic L4_B_Mam|LINE|RTE-X 107798 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 848-50 chr9 28712220 28712394 + 5 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 6998 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 798-54 chr5 110471197 110471476 + 5 NA intron (NM_001039763, intron 12 of 13) L1MA4|LINE|L1 42579 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 1438-2 chr2 110910459 110911005 + 5 NA intron (NM_001371254, intron 11 of 18) L1ME2|LINE|L1 178159 NM_001371254 748-33 chr14 87167607 87167895 + 5 NA Intergenic Intergenic 261973 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 1804 chr20 47065384 47066083 + 5 NA intron (NM_172110, intron 5 of 13) Charlie10|DNA|hAT-Charlie -101234 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 464-267 chr9 22247388 22247572 + 5 NA Intergenic Intergenic -199344 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 883-10 chr16 5415723 5416029 + 5 NA Intergenic MamRep1527|LTR|LTR 200374 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 859-19 chr19 51998796 51999148 + 5 NA intron (NM_198480, intron 5 of 5) intron (NM_198480, intron 5 of 5) 9239 NM_001199324 284370 Hs.368355 NM_198480 ENSG00000197619 ZNF615 - zinc finger protein 615 protein-coding 587-40 chr13 72058725 72058893 + 5 NA Intergenic L1MB3|LINE|L1 -191605 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 1147-3 chr2 102939169 102939628 + 5 NA Intergenic Intergenic -43676 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 665-45 chr17 51431626 51431831 + 5 NA Intergenic Intergenic -3699 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 670-88 chr4 79099159 79099347 + 5 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 127505 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 1954 chr14 46554924 46555502 + 5 NA Intergenic L1PA15-16|LINE|L1 83854 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 419-102 chr15 67994826 67995030 + 5 NA Intergenic AluSz|SINE|Alu -59251 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 980-2 chr1 65788410 65788815 + 5 NA Intergenic L1M7|LINE|L1 -3898 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 647-15 chr11 79159357 79159553 + 5 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 242654 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 864-4 chr10 64592692 64593040 + 5 NA Intergenic L1MEf|LINE|L1 -232662 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 764-41 chr20 3495344 3495610 + 5 NA intron (NM_001323332, intron 1 of 25) intron (NM_001323332, intron 1 of 25) 24459 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 774-46 chr2 144686708 144686905 + 5 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 18839 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 1080-26 chr8 124947025 124947481 + 5 NA intron (NR_027321, intron 3 of 3) L1M4b|LINE|L1 5245 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 1018-23 chr20 42706987 42707439 + 5 NA intron (NM_133170, intron 6 of 31) MLT1C|LTR|ERVL-MaLR 21730 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 3092 chr8 129797511 129798605 + 5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -11434 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 1439-8 chr7 37973241 37973767 + 5 NA Intergenic Intergenic 52185 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 1022-4 chr10 43032447 43032880 + 5 NA Intergenic L1M4c|LINE|L1 35100 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 1028-14 chr6 41219634 41220044 + 5 NA Intergenic L1M2|LINE|L1 -1892 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 1151-10 chr3 18271101 18271698 + 5 NA Intergenic Intergenic 153940 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 712-5 chr1 162464691 162464867 + 5 NA Intergenic Intergenic -32395 NM_001184763 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 675-100 chr8 129743193 129743452 + 5 NA Intergenic L1MEc|LINE|L1 43302 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 624-92 chr4 119913089 119913349 + 5 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -26321 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 881-3 chr10 69544564 69544877 + 5 NA Intergenic Intergenic 28702 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 1020-13 chr3 93936680 93937063 + 5 NA intron (NM_001314077, intron 1 of 15) intron (NM_001314077, intron 1 of 15) 37210 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 609-14 chr11 23760082 23760240 + 5 NA Intergenic Intergenic -340971 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 1091-11 chr8 135441652 135442140 + 5 NA Intergenic THE1B|LTR|ERVL-MaLR -15560 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 716-81 chr7 40259904 40260097 + 5 NA intron (NM_001193312, intron 7 of 12) intron (NM_001193312, intron 7 of 12) 125024 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 883-22 chr21 30961095 30961325 + 5 NA Intergenic Intergenic 77266 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 1835 chr1 246975150 246975725 + 5 NA intron (NM_001204221, intron 4 of 5) L2c|LINE|L2 32620 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 801-64 chr9 16024128 16024413 + 5 NA Intergenic MLT1D|LTR|ERVL-MaLR 228837 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 961-2 chr10 51009243 51009588 + 5 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 18527 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 656-135 chr8 142350927 142351212 + 5 NA intron (NM_001366903, intron 2 of 9) L1MC5|LINE|L1 52113 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 781-20 chr14 72005455 72005715 + 5 NA intron (NM_001370288, intron 2 of 16) L1ME4a|LINE|L1 72058 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 884-7 chr12 102419730 102420129 + 5 NA intron (NM_000618, intron 2 of 3) intron (NM_000618, intron 2 of 3) 58621 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 1924 chr6 71465421 71466396 + 5 NA Intergenic L1MEg|LINE|L1 44881 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 878-26 chr2 56547756 56548150 + 5 NA Intergenic L2a|LINE|L2 -362183 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 820-17 chr14 62952278 62952641 + 5 NA intron (NM_139318, intron 6 of 10) L2b|LINE|L2 92999 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 718-49 chr3 3297189 3297421 + 5 NA Intergenic Intergenic -117588 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 1362-3 chr14 78477840 78478325 + 5 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 74363 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1286-5 chr2 33644273 33644873 + 5 NA Intergenic MER1B|DNA|hAT-Charlie -45211 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 1286-7 chr22 19650261 19650810 + 5 NA Intergenic L1M4|LINE|L1 -63968 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 1141-12 chr9 35877154 35877698 + 5 NA Intergenic L1ME1|LINE|L1 -7025 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 843-44 chr8 138521531 138521840 + 5 NA Intergenic L1ME4a|LINE|L1 -23955 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1025-8 chr17 70785214 70785566 + 5 NA Intergenic Intergenic 416789 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1394-5 chr8 135106802 135107449 + 5 NA Intergenic L1MA1|LINE|L1 -127006 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 721-95 chrY 11303361 11303517 + 5 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat 1118151 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 1168-3 chr5 12516549 12517152 + 5 NA Intergenic Intergenic -58007 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 983-25 chr8 138365563 138366113 + 5 NA intron (NM_015912, intron 2 of 19) Charlie7|DNA|hAT-Charlie 131423 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 420-281 chr8 50612319 50612428 + 5 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 448242 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 759-71 chr8 86982634 86982842 + 5 NA intron (NM_173538, intron 4 of 10) L1ME1|LINE|L1 116323 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1488-2 chr6 140768499 140769164 + 5 NA Intergenic Intergenic 85017 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 841-34 chr6 19231273 19231912 + 5 NA Intergenic MER58B|DNA|hAT-Charlie -51112 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 1579 chr3 98299481 98300086 + 5 NA Intergenic L1MA3|LINE|L1 16895 NM_001005482 79310 Hs.554711 NM_001005482 ENSG00000197938 OR5H2 OR3-10 olfactory receptor family 5 subfamily H member 2 protein-coding 782-4 chr10 62834570 62834776 + 5 NA Intergenic L1MC3|LINE|L1 -15506 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 1564 chr3 143173471 143174044 + 5 NA Intergenic L1MEg|LINE|L1 53986 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 640-52 chr18 2814716 2814956 + 5 NA Intergenic L1M4|LINE|L1 -32170 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 766-5 chr10 34060076 34060251 + 5 NA Intergenic Intergenic -287483 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 775-44 chr2 88425025 88425337 + 5 NA Intergenic L1MEd|LINE|L1 27512 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 807-8 chr11 48662974 48663326 + 5 NA Intergenic ALR/Alpha|Satellite|centr 174357 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 1359 chr15 91815418 91816005 + 5 NA Intergenic LTR103b_Mam|LTR|ERV1? -37997 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 871-42 chr8 139569499 139569884 + 5 NA Intergenic Intergenic 133432 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 726-83 chr8 140126311 140126578 + 5 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -25909 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1581 chr1 246988078 246988725 + 5 NA intron (NR_037892, intron 3 of 5) intron (NR_037892, intron 3 of 5) 19656 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 852-25 chr2 27982451 27982846 + 5 NA intron (NM_199193, intron 4 of 13) L1MB2|LINE|L1 -13719 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 993-15 chr4 31761358 31761779 + 5 NA Intergenic MSTA|LTR|ERVL-MaLR -235811 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 2759 chr11 34413088 34414218 + 5 NA Intergenic L1MEi|LINE|L1 -25281 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 1054-12 chr4 55544574 55544941 + 5 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 1175 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 1474 chr10 76491957 76492512 + 5 NA intron (NM_001305581, intron 6 of 6) L1M1|LINE|L1 -395810 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 780-52 chr5 150891176 150891435 + 5 NA intron (NM_001346557, intron 3 of 3) L1MEc|LINE|L1 13678 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 747-41 chr21 27523092 27523339 + 5 NA Intergenic MLT2C2|LTR|ERVL -199164 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 874-15 chr22 34692594 34692842 + 5 NA Intergenic L2b|LINE|L2 305198 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 821 chr1 38684210 38684613 + 5 NA Intergenic MIRb|SINE|MIR 175361 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 678-97 chr7 57169235 57169459 + 5 NA intron (NR_030766, intron 3 of 3) intron (NR_030766, intron 3 of 3) 10809 NR_030766 642006 Hs.562648 NR_030766 GUSBP10 - GUSB pseudogene 10 pseudo 1112-11 chr4 114215359 114215770 + 5 NA Intergenic LTR16E2|LTR|ERVL -235917 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 669-12 chr10 44611086 44611411 + 5 NA Intergenic L1MB4|LINE|L1 -226151 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 926-15 chr2 157153104 157153321 + 5 NA Intergenic Intergenic -104493 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 1062-20 chr6 155633574 155633974 + 5 NA Intergenic Intergenic 118930 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 1071-28 chr9 31674373 31674685 + 5 NA Intergenic Intergenic -293039 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 884-48 chr9 23878557 23878815 + 5 NA Intergenic Intergenic -28085 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 759-33 chr19 37136271 37136553 + 5 NA Intergenic Intergenic 36024 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 640-33 chr14 49021956 49022261 + 5 NA Intergenic Intergenic 564272 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 781-44 chr3 147034540 147034747 + 5 NA Intergenic L1MCa|LINE|L1 112720 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 707-103 chr8 89192712 89192890 + 5 NA Intergenic L2c|LINE|L2 564910 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 838-23 chr3 113052476 113052676 + 5 NA Intergenic L2a|LINE|L2 -32905 NM_001319112 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 926-30 chr9 35150812 35151113 + 5 NA Intergenic AluSx1|SINE|Alu -11047 NM_001371189 538-53 chr12 47097740 47098009 + 5 NA intron (NM_138371, intron 1 of 3) intron (NM_138371, intron 1 of 3) -17915 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 1284 chr14 49037565 49037953 + 5 NA Intergenic Intergenic 548621 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 900-2 chr1 211171538 211171874 + 5 NA Intergenic MIRb|SINE|MIR -37558 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 711-71 chr8 119230589 119230812 + 5 NA intron (NR_149114, intron 3 of 5) intron (NR_149114, intron 3 of 5) 16157 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 774-88 chr8 121444960 121445314 + 5 NA Intergenic MIRb|SINE|MIR -194209 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 845-23 chr3 76695745 76696096 + 5 NA Intergenic Intergenic -344179 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 1005-17 chr5 113690025 113690421 + 5 NA Intergenic MamGypsy2-I|LTR|Gypsy 176529 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 750-20 chr15 88525094 88525434 + 5 NA intron (NR_026645, intron 3 of 4) Charlie2b|DNA|hAT-Charlie 21111 NR_135743 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 1418 chr6 61584760 61585581 + 5 NA intron (NR_146870, intron 14 of 15) intron (NR_146870, intron 14 of 15) 11040 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 507-153 chr21 27168432 27168634 + 5 NA Intergenic Intergenic -201445 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 1313-7 chr5 93272528 93273126 + 5 NA Intergenic MSTD|LTR|ERVL-MaLR 298516 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 1881-2 chr2 67764238 67765110 + 5 NA Intergenic Intergenic 60888 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 731-77 chr8 132589405 132589567 + 5 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -28007 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 665-31 chr14 59856822 59857103 + 5 NA intron (NM_021136, intron 1 of 8) MIRc|SINE|MIR 13814 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 1653-3 chr8 126604738 126605419 + 5 NA Intergenic Intergenic -46600 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 1360-6 chr5 7935530 7936066 + 5 NA Intergenic Intergenic 66650 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 1628 chr2 129408758 129409508 + 5 NA Intergenic MLT1B|LTR|ERVL-MaLR -135242 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 510-134 chr2 22465796 22466009 + 5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -70577 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 708 chr1 13885483 13885818 + 5 NA Intergenic L1MC4|LINE|L1 136235 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 1376-5 chr20 46499252 46499822 + 5 NA TTS (NM_001353824) TTS (NM_001353824) 14035 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 1799-2 chr15 71172970 71173673 + 5 NA intron (NR_120349, intron 1 of 1) L1MEc|LINE|L1 15738 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 1042-16 chr9 74231345 74231911 + 5 NA Intergenic MER65-int|LTR|ERV1 -139903 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 796-23 chr18 78469664 78469860 + 5 NA Intergenic Intergenic -476035 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 658-54 chr17 50921663 50921878 + 5 NA Intergenic Intergenic -53792 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 1521-7 chr4 30423846 30424397 + 5 NA Intergenic L1PA8|LINE|L1 -296248 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 542-65 chr15 25169732 25169880 + 5 NA promoter-TSS (NR_001291) promoter-TSS (NR_001291) -917 NR_001291 338433 NR_001291 ENSG00000201831 SNORD115-1 HBII-52-1|RNHBII52 small nucleolar RNA, C/D box 115-1 snoRNA 603-154 chr7 46246423 46246660 + 5 NA Intergenic L1MEf|LINE|L1 -325269 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 786-32 chr2 147322180 147322524 + 5 NA Intergenic MSTA|LTR|ERVL-MaLR -522165 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 770-13 chr12 94359551 94359716 + 5 NA intron (NR_160431, intron 7 of 12) L1MA5|LINE|L1 97112 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 812-58 chrX 82242837 82243113 + 5 NA Intergenic L1PB4|LINE|L1 1040873 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 1097-16 chr8 126273234 126273628 + 5 NA Intergenic L1MC1|LINE|L1 -52064 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 819-11 chr16 76741514 76741768 + 5 NA Intergenic L1P4a|LINE|L1 106643 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 1481-2 chr2 31696526 31697204 + 5 NA Intergenic Intergenic 107115 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 702-26 chr15 79806301 79806478 + 5 NA Intergenic Intergenic 90608 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 1686 chr10 76607470 76608158 + 5 NA Intergenic L1MEf|LINE|L1 -280230 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 399-26 chr10 19304379 19304510 + 5 NA intron (NM_001142308, intron 21 of 39) Charlie5|DNA|hAT-Charlie 255643 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 840-10 chr11 50571640 50571834 + 5 NA Intergenic ALR/Alpha|Satellite|centr 162590 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 2103 chr17 62336734 62337908 + 5 NA Intergenic Intergenic -32897 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 558-180 chr5 121643756 121643918 + 5 NA Intergenic L1PA17|LINE|L1 -208045 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 811-15 chr14 59011212 59011551 + 5 NA intron (NR_110547, intron 5 of 5) L1M3e|LINE|L1 -177286 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 1032-8 chr14 54825583 54825867 + 5 NA Intergenic AluSx1|SINE|Alu 52468 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 563-204 chrX 117583174 117583361 + 5 NA Intergenic L1PB2|LINE|L1 390471 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 942-32 chr5 27966890 27967227 + 5 NA Intergenic L1MB8|LINE|L1 320607 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 415-209 chr5 18786453 18786565 + 5 NA Intergenic HAL1|LINE|L1 979235 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 932-15 chr3 139667356 139667578 + 5 NA intron (NM_178177, intron 1 of 4) L1MA4|LINE|L1 10505 NM_001320510 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 960-2 chr10 80649176 80649540 + 5 NA promoter-TSS (NR_155749) promoter-TSS (NR_155749) -439 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 881-27 chr3 164066820 164067164 + 5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 104564 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 731-69 chr7 84626137 84626563 + 5 NA Intergenic Intergenic 93874 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 934-2 chr1 61555908 61556242 + 5 NA Intergenic MLT1J|LTR|ERVL-MaLR -98167 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 779-7 chr10 15416110 15416445 + 5 NA Intergenic L1MEg|LINE|L1 -44988 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 1060-3 chr11 2319620 2320036 + 5 NA Intergenic Intergenic -16688 NR_138249 29125 Hs.559181 NM_014144 ENSG00000110665 C11orf21 - chromosome 11 open reading frame 21 protein-coding 1357-4 chr8 129346066 129346520 + 5 NA Intergenic L2c|LINE|L2 -105053 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 1423 chr2 105939779 105940467 + 5 NA Intergenic AluY|SINE|Alu 88276 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 1075-17 chr9 72634582 72634923 + 5 NA intron (NM_138691, intron 4 of 23) MER21C|LTR|ERVL 112951 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 870-2 chr10 106344297 106344608 + 5 NA Intergenic Intergenic 204287 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 1142-2 chr14 72861677 72862204 + 5 NA intron (NM_001280542, intron 1 of 10) L2a|LINE|L2 30709 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 458-155 chr20 50960349 50960607 + 5 NA 3' UTR (NM_014484, exon 1 of 1) 3' UTR (NM_014484, exon 1 of 1) 1660 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 557-26 chr10 131497799 131498057 + 5 NA Intergenic Intergenic -186207 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 556-52 chr12 55556798 55557010 + 5 NA Intergenic Intergenic 5677 NM_001005494 341418 Hs.495021 NM_001005494 ENSG00000179626 OR6C4 OR12-10 olfactory receptor family 6 subfamily C member 4 protein-coding 881-39 chr7 120256663 120256969 + 5 NA Intergenic MSTA-int|LTR|ERVL-MaLR -16359 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 1001-2 chr1 247146020 247146533 + 5 NA intron (NM_001297567, intron 3 of 3) intron (NM_001297567, intron 3 of 3) 25741 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 790-17 chr17 30065105 30065283 + 5 NA intron (NM_198529, intron 14 of 22) L1MA5|LINE|L1 -51613 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 1750-2 chr7 6662055 6662742 + 5 NA Intergenic AluSx1|SINE|Alu 25080 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 1038-2 chr11 125153258 125153542 + 5 NA Intergenic Intergenic 11209 NR_125759 103695364 Hs.576940 NR_125759 ENSG00000254880 PKNOX2-AS1 - PKNOX2 antisense RNA 1 (head to head) ncRNA 1129-17 chr6 46038626 46039236 + 5 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) -23042 NM_001256023 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 894-19 chr2 44910468 44910762 + 5 NA Intergenic L1MEd|LINE|L1 28273 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 1827 chr10 66602456 66603146 + 5 NA intron (NM_001127384, intron 10 of 17) L1MA4|LINE|L1 -323235 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 883-46 chrX 66818663 66819010 + 5 NA Intergenic L1MA2|LINE|L1 -179538 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 833-7 chr15 59977101 59977407 + 5 NA Intergenic Intergenic -27057 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 1076-12 chr2 42415047 42415371 + 5 NA Intergenic Intergenic -46252 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 1232-2 chr19 37634750 37635144 + 5 NA 3' UTR (NM_001320671, exon 6 of 6) 3' UTR (NM_001320671, exon 6 of 6) 20518 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 785-60 chr8 120221896 120222220 + 5 NA intron (NM_021110, intron 14 of 47) MIRb|SINE|MIR 96956 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 670-61 chr2 52775015 52775306 + 5 NA Intergenic Intergenic -72545 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 820-53 chr6 66251901 66252304 + 5 NA Intergenic L1MA3|LINE|L1 464223 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 967-16 chr3 1737689 1738038 + 5 NA Intergenic L1PA15|LINE|L1 -360940 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 826-63 chr8 118332178 118332465 + 5 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -220502 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 792-8 chr10 85088890 85089246 + 5 NA Intergenic L1M4|LINE|L1 109837 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 624-81 chr3 44641426 44641618 + 5 NA intron (NM_001351734, intron 6 of 6).2 intron (NM_001351734, intron 6 of 6).2 -7210 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 565-29 chr12 2506178 2506383 + 5 NA intron (NM_199460, intron 8 of 49).2 intron (NM_199460, intron 8 of 49).2 165940 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 794-33 chr4 59396067 59396334 + 5 NA Intergenic Intergenic 382627 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 913-9 chr14 61697471 61697747 + 5 NA promoter-TSS (NM_001243084) promoter-TSS (NM_001243084) -13 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 1403 chr10 52585133 52585673 + 5 NA intron (NR_155748, intron 1 of 2) L1MA3|LINE|L1 -114870 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 722-39 chr17 83141903 83142146 + 5 NA Intergenic L1MA7|LINE|L1 60878 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 1037 chr1 159551168 159551524 + 5 NA Intergenic Intergenic -15339 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 848-2 chr1 169638557 169638897 + 5 NA Intergenic L1MA8|LINE|L1 -8603 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 684-61 chr2 175251233 175251425 + 5 NA Intergenic Intergenic -69619 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 880-24 chr20 63146968 63147299 + 5 NA Intergenic L1ME2|LINE|L1 -31367 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 2280 chr14 61957032 61957740 + 5 NA intron (NM_001367663, intron 1 of 7) L1MA10|LINE|L1 29691 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 814-25 chr16 60034782 60035067 + 5 NA intron (NR_110917, intron 1 of 3) L1MD1|LINE|L1 179571 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 799-24 chr19 56421740 56421963 + 5 NA intron (NM_001159860, intron 4 of 4) L2a|LINE|L2 17519 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 818-23 chr19 32492503 32492761 + 5 NA Intergenic Intergenic 86507 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like C-mannosyltransferase 3 protein-coding 695-100 chr7 89314509 89314704 + 5 NA intron (NM_181646, intron 2 of 3) MIRb|SINE|MIR -518869 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 896-11 chr15 25319336 25319540 + 5 NA intron (NR_146177, intron 146 of 147) L1MA8|LINE|L1 41095 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 550-7 chr1 73287317 73287520 + 5 NA Intergenic L1MC1|LINE|L1 -18752 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 734-29 chr19 27713559 27713809 + 5 NA Intergenic ALR/Alpha|Satellite|centr -79747 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1424-5 chr5 27500792 27501107 + 5 NA Intergenic Intergenic 28657 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 1317-3 chr12 34497156 34497788 + 5 NA Intergenic ALR/Alpha|Satellite|centr 474976 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 641-46 chr17 57223385 57223555 + 5 NA Intergenic L1M5|LINE|L1 -32381 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 842-13 chr15 81651021 81651297 + 5 NA Intergenic MER52A|LTR|ERV1 -276946 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 836-64 chr8 136864027 136864280 + 5 NA intron (NR_147196, intron 4 of 5) L3|LINE|CR1 333355 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 940-15 chr2 194859338 194859712 + 5 NA Intergenic L1MC4|LINE|L1 128930 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 643-73 chr3 101376208 101376510 + 5 NA intron (NM_001282803, intron 3 of 20) L1MB3|LINE|L1 -55784 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 1201-4 chr2 15027062 15027483 + 5 NA Intergenic L1ME3G|LINE|L1 394555 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 1010-13 chr8 128439462 128439841 + 5 NA intron (NR_121672, intron 2 of 7) L2c|LINE|L2 125028 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 927-10 chr21 20783133 20783420 + 5 NA intron (NR_109786, intron 1 of 7) intron (NR_109786, intron 1 of 7) 19832 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 725-32 chr2 4130522 4130873 + 5 NA Intergenic L1MEf|LINE|L1 156536 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 892-33 chr6 39243745 39244205 + 5 NA Intergenic Intergenic -14500 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 1602-2 chr13 113892367 113893081 + 5 NA Intergenic L1MC2|LINE|L1 -2379 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 893-8 chr11 42703055 42703377 + 5 NA Intergenic Intergenic -449526 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 1218-8 chr9 103759681 103760165 + 5 NA Intergenic Intergenic -239786 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 851-12 chr14 88296827 88297058 + 5 NA intron (NM_021161, intron 1 of 6) MER104|DNA|TcMar-Tc2 -26031 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 985-18 chr5 110164972 110165258 + 5 NA Intergenic L1ME1|LINE|L1 281933 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 777-59 chr5 152974499 152974791 + 5 NA Intergenic Intergenic -2296 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 618-87 chr3 178610736 178610900 + 5 NA intron (NM_001278911, intron 1 of 4) L1MA1|LINE|L1 51968 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 741-10 chr10 58739636 58739913 + 5 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 24759 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 657-29 chr14 82029846 82030071 + 5 NA Intergenic Intergenic -286820 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 1046-2 chr11 28999257 28999729 + 5 NA Intergenic L3|LINE|CR1 -521945 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 521-168 chr3 175902494 175902656 + 5 NA Intergenic MER68|LTR|ERVL -126242 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 608-6 chr1 115263265 115263436 + 5 NA Intergenic Penelope1_Vert|LINE|Penelope -19684 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 622-148 chr8 140222542 140222727 + 5 NA intron (NM_001160372, intron 16 of 22) L2b|LINE|L2 -122099 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 856-52 chr8 142140531 142140807 + 5 NA Intergenic Intergenic -35670 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 1128-3 chr10 31712159 31712643 + 5 NA Intergenic L1MEf|LINE|L1 196525 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 626-51 chr18 40546843 40547041 + 5 NA Intergenic Intergenic 480656 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 946-13 chr2 79332320 79332693 + 5 NA Intergenic Intergenic 168338 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 960-41 chr8 79126122 79126408 + 5 NA Intergenic Intergenic -205923 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 696-36 chr13 92984577 92984774 + 5 NA Intergenic L2a|LINE|L2 -60666 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 486-296 chr8 115709673 115709909 + 5 NA Intergenic Intergenic -40816 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 804-72 chr8 124879827 124880112 + 5 NA Intergenic Intergenic -57911 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 886-14 chr19 56789197 56789710 + 5 NA intron (NR_163143, intron 9 of 12) MIR|SINE|MIR -23027 NR_023847 100169890 NR_023847 PEG3-AS1 APEG3|NCRNA00155|PEG3-AS|PEG3AS PEG3 antisense RNA 1 ncRNA 1296-4 chr3 86683490 86683963 + 5 NA Intergenic L1MEg|LINE|L1 201783 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 948-16 chr19 29017013 29017462 + 5 NA Intergenic Intergenic 14682 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 758-24 chr14 53551188 53551486 + 5 NA Intergenic Intergenic 397147 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 1466-3 chr18 4079850 4080329 + 5 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 117736 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 480-260 chr6 135900356 135900539 + 5 NA intron (NM_018945, intron 1 of 12) L1M6|LINE|L1 48746 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 550-249 chrX 40287579 40287747 + 5 NA TTS (NR_110386) TTS (NR_110386) 24746 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 1068-14 chr3 86591402 86591908 + 5 NA Intergenic Intergenic 109712 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 1065-19 chr8 139571481 139571956 + 5 NA Intergenic Intergenic 131405 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1337-3 chr20 56034924 56035489 + 5 NA Intergenic L1ME3G|LINE|L1 -29687 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 1477-10 chr9 113041993 113042505 + 5 NA 3' UTR (NM_001282515, exon 4 of 4) 3' UTR (NM_001282515, exon 4 of 4) 14475 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 1385-2 chr11 104796451 104796759 + 5 NA Intergenic Intergenic 102065 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 829-40 chr7 56216702 56217035 + 5 NA Intergenic LTR104_Mam|LTR|Gypsy -100451 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 1275-8 chr8 122473457 122474021 + 5 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 94905 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1429-6 chr8 10093453 10094041 + 5 NA intron (NM_001135670, intron 1 of 4) L1MB7|LINE|L1 -1904 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 1427 chr2 103272698 103273431 + 5 NA Intergenic L1MEg|LINE|L1 -288635 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 942-38 chr8 248824 249029 + 5 NA Intergenic Intergenic 16470 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 1051-7 chr19 52416830 52417150 + 5 NA 3' UTR (NM_032423, exon 7 of 7) 3' UTR (NM_032423, exon 7 of 7) -12158 NM_001291368 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 1773 chr10 59405602 59406248 + 5 NA Intergenic L1MEf|LINE|L1 -42744 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 1331-3 chr22 48770249 48770834 + 5 NA Intergenic L1M5|LINE|L1 -9754 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 720-38 chr18 37031569 37031739 + 5 NA intron (NM_001353920, intron 7 of 10) L1MEc|LINE|L1 -107840 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 535-170 chr3 87187292 87187507 + 5 NA Intergenic Intergenic 38878 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 912-36 chr5 151830033 151830354 + 5 NA intron (NM_000171, intron 7 of 8) L1MB7|LINE|L1 -58017 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 1243-3 chr19 36544488 36545031 + 5 NA 3' UTR (NM_001321351, exon 6 of 6) 3' UTR (NM_001321351, exon 6 of 6) -16488 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 944-8 chr16 74788939 74789193 + 5 NA Intergenic L1ME1|LINE|L1 -14246 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 984-20 chr8 126664768 126665133 + 5 NA Intergenic MLT1D|LTR|ERVL-MaLR -106472 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 895-20 chr2 103942207 103942483 + 5 NA Intergenic L1MDa|LINE|L1 465987 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 1959 chr8 139242164 139242825 + 5 NA Intergenic Intergenic -328453 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 849-47 chr8 110243880 110244187 + 5 NA Intergenic L1PA16|LINE|L1 -268262 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 796-41 chr5 6284318 6284601 + 5 NA Intergenic MIRc|SINE|MIR 52833 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 816-54 chr9 116876133 116876448 + 5 NA intron (NM_014010, intron 9 of 21) Tigger1|DNA|TcMar-Tigger 188985 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 1199-3 chr12 65539548 65540173 + 5 NA intron (NR_120433, intron 3 of 4) intron (NR_120433, intron 3 of 4) 17451 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 1242-5 chr17 63286466 63286870 + 5 NA intron (NM_025185, intron 8 of 25) L1MEc|LINE|L1 153599 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 887-26 chr5 167873754 167874080 + 5 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 118988 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 775-55 chr3 28395644 28395856 + 5 NA intron (NM_001040432, intron 2 of 9) L1MA9|LINE|L1 46601 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 1165-13 chr8 138398877 138399218 + 5 NA intron (NM_001362965, intron 1 of 19) (TAA)n|Simple_repeat|Simple_repeat 98214 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1241-5 chr20 19029556 19029987 + 5 NA Intergenic L1M4|LINE|L1 -182871 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 1252-3 chr10 39226665 39227193 + 5 NA Intergenic ALR/Alpha|Satellite|centr 530333 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 785-2 chr1 34513384 34513794 + 5 NA Intergenic L1ME1|LINE|L1 156105 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 1439 chr10 70621479 70622111 + 5 NA Intergenic MER57B2|LTR|ERV1 -19007 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 1089-8 chr21 17834049 17834706 + 5 NA Intergenic L2b|LINE|L2 -15021 NM_001100420 54149 Hs.293811 NM_017447 ENSG00000154642 C21orf91 C21orf14|C21orf38|CSSG1|EURL|YG81 chromosome 21 open reading frame 91 protein-coding 497-138 chr2 169107133 169107328 + 5 NA Intergenic MIRb|SINE|MIR 26123 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 1111-6 chr17_KI270729v1_random 12662 13067 + 5 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 1213-13 chr8 134234339 134234801 + 5 NA Intergenic THE1D|LTR|ERVL-MaLR 348074 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1326-7 chr7 5096229 5096785 + 5 NA Intergenic AluSx|SINE|Alu 24447 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1101-7 chr2 158327624 158328079 + 5 NA intron (NM_138803, intron 7 of 13) L1MC|LINE|L1 128902 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 980-8 chr2 56068189 56068435 + 5 NA Intergenic L1MA5|LINE|L1 -20986 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 737-84 chr8 84173535 84173733 + 5 NA Intergenic Intergenic -9153 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1602-3 chr15 96916762 96917319 + 5 NA Intergenic L1MEd|LINE|L1 133605 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 1129-14 chr3 114920054 114920506 + 5 NA intron (NM_001348805, intron 3 of 10) L1MA9|LINE|L1 -19655 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1196-4 chr2 122847313 122847701 + 5 NA Intergenic Intergenic 225974 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 809-36 chr4 92902482 92902658 + 5 NA intron (NM_001286838, intron 2 of 14) L1P4|LINE|L1 598171 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 826-35 chr20 47693397 47693711 + 5 NA intron (NM_198596, intron 4 of 20) L1ME3Cz|LINE|L1 92510 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 764-49 chr3 185237029 185237348 + 5 NA intron (NM_001966, intron 2 of 6) L1PA15-16|LINE|L1 16084 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 821-7 chr10 31433837 31434020 + 5 NA intron (NM_001323646, intron 4 of 11) Charlie1a|DNA|hAT-Charlie -34173 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 1153-4 chr12 1709123 1709689 + 5 NA intron (NM_024551, intron 1 of 7).2 L1ME1|LINE|L1 18336 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 1329-2 chr19 37126280 37126777 + 5 NA intron (NM_001329519, intron 4 of 4) intron (NM_001329519, intron 4 of 4) 45908 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 771-44 chr2 181973969 181974251 + 5 NA intron (NR_048567, intron 1 of 4) intron (NR_048567, intron 1 of 4) -11714 NM_001080545 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 818-21 chr14 68668962 68669331 + 5 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -40359 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 734-2 chr1 112175916 112176237 + 5 NA Intergenic MIRb|SINE|MIR 185540 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 754-30 chr17 26852339 26852631 + 5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 236756 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 839-3 chr10 29962018 29962308 + 5 NA Intergenic Intergenic 97423 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 1111-4 chr13 80579024 80579317 + 5 NA Intergenic L1PB1|LINE|L1 -238044 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 893-13 chr12 15024623 15024975 + 5 NA Intergenic L1PA15|LINE|L1 22966 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 1703 chr10 44729193 44730072 + 5 NA Intergenic L1MB8|LINE|L1 -181684 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 1080-6 chr14 60848488 60848883 + 5 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 113924 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 850-5 chr10 43617137 43617428 + 5 NA exon (NM_001318140, exon 5 of 5) exon (NM_001318140, exon 5 of 5) 10844 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 819-17 chr2 234643499 234643819 + 5 NA Intergenic L1MEg|LINE|L1 -39009 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 808-60 chr8 137385128 137385410 + 5 NA Intergenic L1M5|LINE|L1 28319 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 555-25 chr10 98506091 98506241 + 5 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -59203 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 542-193 chr7 1274289 1274453 + 5 NA Intergenic Intergenic 41499 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 842-19 chr2 29662914 29663419 + 5 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -187789 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 897-35 chr7 137871658 137871921 + 5 NA Intergenic MIRc|SINE|MIR -24925 NM_001321708 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 931-26 chr7 53760473 53760840 + 5 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 51275 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 848-21 chr2 34455709 34455970 + 5 NA Intergenic L1MA2|LINE|L1 -221718 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 818-5 chr10 57028687 57028992 + 5 NA Intergenic Intergenic 275720 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 1006-23 chr5 141233728 141234264 + 5 NA promoter-TSS (NR_001281) promoter-TSS (NR_001281) -337 NR_001281 54660 Hs.676071 NR_001281 ENSG00000146001 PCDHB18P PCDH-psi2|PCDHB18 protocadherin beta 18 pseudogene pseudo 1373-6 chr3 66900352 66900931 + 5 NA Intergenic L1MB8|LINE|L1 -97666 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 636-24 chr11 90738258 90738504 + 5 NA intron (NR_104190, intron 3 of 6) MER53|DNA|hAT 130821 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 762-50 chr4 149300031 149300417 + 5 NA Intergenic Intergenic 145929 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 967-15 chr22 34504280 34504501 + 5 NA Intergenic MER66-int|LTR|ERV1 493526 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 601-117 chr5 13323429 13323621 + 5 NA Intergenic Intergenic -290639 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 1220-7 chr4 32931224 32931643 + 5 NA Intergenic Intergenic 580395 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1023-12 chr2 99037295 99037662 + 5 NA intron (NR_146001, intron 15 of 18) L1MCa|LINE|L1 -101253 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 383-392 chr8 122650374 122650511 + 5 NA Intergenic L1M1|LINE|L1 43664 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 897-4 chr1 239505391 239505596 + 5 NA intron (NM_001347716, intron 2 of 7) THE1B|LTR|ERVL-MaLR 118925 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 2904 chr8 108817546 108818601 + 5 NA Intergenic Intergenic -30479 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 780-69 chr9 90367523 90367810 + 5 NA intron (NR_109795, intron 2 of 2) intron (NR_109795, intron 2 of 2) 65823 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 1862 chr8 126732941 126733891 + 5 NA Intergenic L1M3|LINE|L1 -174938 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 602-75 chr20 39276220 39276554 + 5 NA Intergenic Intergenic -51639 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 537-82 chr17 13038994 13039221 + 5 NA Intergenic MLT1K|LTR|ERVL-MaLR -21043 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 865-30 chr22 27340920 27341259 + 5 NA Intergenic L1ME1|LINE|L1 30438 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 825-55 chr8 134417552 134417898 + 5 NA Intergenic L1PA12|LINE|L1 -180346 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 910-27 chr3 84195179 84195471 + 5 NA Intergenic L1MC1|LINE|L1 674250 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 1285-2 chr15 94945546 94945868 + 5 NA Intergenic L1ME1|LINE|L1 90344 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 1251-7 chr5 24014122 24014750 + 5 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 63088 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 803-63 chr9 37367403 37367704 + 5 NA Intergenic L2c|LINE|L2 -55143 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 905-20 chr20 56567915 56568386 + 5 NA Intergenic AluJb|SINE|Alu -9413 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 783-26 chr14 86621580 86621928 + 5 NA Intergenic MLT1B|LTR|ERVL-MaLR -284024 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 550-16 chr1 221239477 221239681 + 5 NA Intergenic Intergenic 96717 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 665-39 chr16 59717269 59717498 + 5 NA Intergenic Intergenic 37808 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 1054-20 chr8 61255468 61255887 + 5 NA Intergenic Intergenic -32293 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 626-54 chr19 30181055 30181352 + 5 NA Intergenic L1MEf|LINE|L1 -191181 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1442-4 chr5 76649073 76649479 + 5 NA intron (NM_006633, intron 17 of 35) L1MDa|LINE|L1 -25873 NM_004101 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 1231 chr10 41734706 41735245 + 5 NA Intergenic ALR/Alpha|Satellite|centr 633070 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1070-2 chr1 175868556 175868983 + 5 NA Intergenic Intergenic -8574 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 963 chr1 68830707 68831008 + 5 NA Intergenic L1M4c|LINE|L1 -225041 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 1522-3 chr3 113542271 113542805 + 5 NA intron (NM_001322297, intron 1 of 24) L1M8|LINE|L1 9983 NR_136283 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 864-15 chr15 98291550 98291811 + 5 NA Intergenic MLT1L|LTR|ERVL-MaLR 39878 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 2368-2 chr5 33006369 33007172 + 5 NA Intergenic L1M5|LINE|L1 59327 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 1755 chr16 3316036 3316734 + 5 NA intron (NM_001302109, intron 5 of 6) intron (NM_001302109, intron 5 of 6) 10173 NM_001324041 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 735-66 chr4 128174520 128174788 + 5 NA intron (NM_001350531, intron 10 of 16) L1MC5a|LINE|L1 113159 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 490-207 chr4 85554364 85554518 + 5 NA intron (NM_001025616, intron 1 of 9) L1PREC2|LINE|L1 79291 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 1198-6 chr19 36743388 36743922 + 5 NA 3' UTR (NM_001193552, exon 5 of 5) 3' UTR (NM_001193552, exon 5 of 5) 29152 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 1186-18 chr7 4421068 4421536 + 5 NA Intergenic L1MD2|LINE|L1 -260993 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 671-71 chr4 74615596 74615854 + 5 NA Intergenic Intergenic 170589 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 2418 chr2 43119275 43120535 + 5 NA Intergenic Intergenic -17460 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 798-53 chr5 110217873 110218227 + 5 NA Intergenic L1PA8A|LINE|L1 295865 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 631-17 chr10 37833502 37833803 + 5 NA intron (NR_147992, intron 5 of 8) intron (NR_147992, intron 5 of 8) 23958 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 645-98 chr5 66290972 66291201 + 5 NA Intergenic Intergenic -81640 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 3122 chr14 45786350 45787710 + 5 NA Intergenic LTR25-int|LTR|ERV1 -71428 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 853-21 chr20 56031641 56031870 + 5 NA Intergenic L1ME3G|LINE|L1 -26236 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 1183-4 chr2 30730881 30731180 + 5 NA intron (NM_144575, intron 21 of 22) intron (NM_144575, intron 21 of 22) 76416 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 700-92 chr6 140842382 140842664 + 5 NA Intergenic Intergenic 158709 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 801-4 chr11 36918974 36919225 + 5 NA Intergenic Intergenic -320820 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 1085-23 chr9 116022668 116022971 + 5 NA Intergenic MER58A|DNA|hAT-Charlie -97612 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 1121-4 chr13 43604386 43604950 + 5 NA intron (NM_001347965, intron 1 of 15) L1MA3|LINE|L1 24809 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 765-68 chr9 113053622 113053794 + 5 NA intron (NM_001282515, intron 1 of 3) L2a|LINE|L2 3016 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 860-15 chr15 57963045 57963288 + 5 NA intron (NM_170696, intron 8 of 11) intron (NM_170696, intron 8 of 11) 50857 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 676-118 chr9 36701307 36701469 + 5 NA Intergenic MIR3|SINE|MIR 122211 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 610-16 chr10 17262734 17262923 + 5 NA Intergenic Intergenic -32843 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 719-31 chr16 72386306 72386558 + 5 NA intron (NR_126330, intron 7 of 13) L1M4|LINE|L1 -213982 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 3427 chr10 120615989 120617320 + 5 NA Intergenic L1MEc|LINE|L1 18705 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 1336-4 chrX 58317069 58317573 + 5 NA Intergenic ALR/Alpha|Satellite|centr -406688 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 1166 chr12 44462924 44463324 + 5 NA Intergenic L1MEg|LINE|L1 412537 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 2038 chr15 98251317 98252008 + 5 NA Intergenic L1MEg|LINE|L1 79896 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 843-45 chr8 139783712 139783970 + 5 NA intron (NM_001160372, intron 21 of 22) L1ME1|LINE|L1 -80718 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 953-22 chr5 44980534 44980848 + 5 NA Intergenic L1PA16|LINE|L1 171744 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 564-213 chr9 69847244 69847402 + 5 NA intron (NM_001010940, intron 2 of 5) MIRb|SINE|MIR 26506 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 970-3 chr12 87289434 87289683 + 5 NA Intergenic LTR67B|LTR|ERVL -41181 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 447-123 chr2 41546631 41546810 + 5 NA Intergenic Intergenic -330835 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 902-37 chr7 90573009 90573425 + 5 NA Intergenic Intergenic -23104 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 668-50 chr2 96517251 96517538 + 5 NA Intergenic L1MEd|LINE|L1 -9285 NR_104346 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 1162-10 chr8 132025781 132026318 + 5 NA intron (NM_001080399, intron 13 of 13) MER53|DNA|hAT 33333 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 1947-3 chr5 16341746 16342701 + 5 NA Intergenic Intergenic 98879 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 3221 chr3 36576943 36578085 + 5 NA Intergenic Intergenic 162347 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 1008-9 chr2 78928811 78929213 + 5 NA Intergenic Intergenic -96690 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 750-70 chr8 110230900 110231073 + 5 NA Intergenic Intergenic -255215 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 1185-4 chr2 122128161 122128508 + 5 NA Intergenic L1MA4A|LINE|L1 372683 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 1788 chr19 36640152 36640780 + 5 NA intron (NM_001297623, intron 4 of 4) MLT1J|LTR|ERVL-MaLR 26371 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 1114-3 chr3 153370159 153370546 + 5 NA Intergenic MIRb|SINE|MIR -114143 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 1018-28 chr6 38928499 38928775 + 5 NA intron (NM_001371, intron 73 of 91) intron (NM_001371, intron 73 of 91) 24470 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 803-27 chr2 154231394 154231598 + 5 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 225942 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 882-5 chr10 23827223 23827544 + 5 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 132656 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 1381-4 chr5 171022973 171023470 + 5 NA intron (NM_022897, intron 14 of 27) L1PA8A|LINE|L1 161203 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 1105-8 chr17 77670397 77670869 + 5 NA Intergenic L1MEf|LINE|L1 57926 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 904-2 chr10 31434476 31434733 + 5 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -34849 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 1121-7 chr2 164304144 164304537 + 5 NA Intergenic MSTC|LTR|ERVL-MaLR 264155 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 1415-8 chr5 110804842 110805183 + 5 NA Intergenic AluY|SINE|Alu 66005 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 994-6 chr16 35663665 35664018 + 5 NA Intergenic L1PA6|LINE|L1 -82711 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 811-51 chrX 45273047 45273305 + 5 NA Intergenic MER92-int|LTR|ERV1 -72300 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 1975-2 chr7 92976373 92977291 + 5 NA Intergenic L2|LINE|L2 -140205 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 1111 chr10 111882931 111883371 + 5 NA Intergenic Intergenic 300614 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 1434-4 chr2 15111906 15112481 + 5 NA Intergenic HAL1M8|LINE|L1 449141 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1519 chr2 117258704 117259196 + 5 NA Intergenic L1MC4a|LINE|L1 -555741 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 752-37 chr2 51798116 51798387 + 5 NA intron (NR_135237, intron 6 of 10) L1PB1|LINE|L1 -572397 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 964-8 chr15 98477910 98478232 + 5 NA intron (NM_182562, intron 4 of 6) L1MEb|LINE|L1 36265 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 830-11 chr11 98984371 98984643 + 5 NA Intergenic L1MA1|LINE|L1 -36442 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 1448-3 chr8 138610144 138610608 + 5 NA intron (NM_152888, intron 56 of 64) intron (NM_152888, intron 56 of 64) -112646 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 591-57 chr18 1915099 1915423 + 5 NA Intergenic L1MEg|LINE|L1 -555632 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 844-70 chr8 135361718 135362157 + 5 NA Intergenic MLT1J2|LTR|ERVL-MaLR -95519 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 799-12 chr12 115186784 115187089 + 5 NA Intergenic L2a|LINE|L2 -502761 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 1050-13 chr7 3004694 3004993 + 5 NA intron (NM_001324281, intron 1 of 25) intron (NM_001324281, intron 1 of 25) 39024 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 989-17 chr3 28003969 28004350 + 5 NA Intergenic MLT1D|LTR|ERVL-MaLR -170023 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 694-11 chr10 30264023 30264312 + 5 NA Intergenic L1MA3|LINE|L1 52315 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 847-30 chr2 210935756 210936045 + 5 NA Intergenic L1M2|LINE|L1 318329 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 822 chr1 36950411 36950696 + 5 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 83962 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 1164-12 chr7 62664311 62664705 + 5 NA Intergenic ALR/Alpha|Satellite|centr 639548 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1007-16 chr6 105414517 105414908 + 5 NA Intergenic L1M1|LINE|L1 -11630 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 1451-2 chr18 73220756 73221596 + 5 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 43322 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 578-118 chr3 112888468 112888687 + 5 NA Intergenic Intergenic -42627 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 948-40 chrX 77107484 77107985 + 5 NA Intergenic L1MA9|LINE|L1 -93202 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 908-28 chr3 107168228 107168561 + 5 NA intron (NR_028303, intron 1 of 3) L1PA13|LINE|L1 72244 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 1060-5 chr11 55111647 55112145 + 5 NA Intergenic ALR/Alpha|Satellite|centr -150259 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 1017-15 chr4 99936162 99936546 + 5 NA intron (NM_001031723, intron 1 of 7) L1MB8|LINE|L1 10264 NM_001278311 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 935-28 chr3 192980366 192980725 + 5 NA Intergenic L2a|LINE|L2 -62689 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 788-12 chr12 2399945 2400137 + 5 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 130265 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 493-258 chr6 51608956 51609163 + 5 NA Intergenic Intergenic -12811 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 1621 chr1 227658658 227659459 + 5 NA 3' UTR (NM_001367910, exon 5 of 5) 3' UTR (NM_001367910, exon 5 of 5) 38649 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 967-19 chr5 45880753 45881249 + 5 NA Intergenic Intergenic -184621 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 516-143 chr2 193595781 193596024 + 5 NA Intergenic L1MA2|LINE|L1 -748367 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 1223-2 chr11 69161885 69162332 + 5 NA non-coding (NR_161183, exon 2 of 2) non-coding (NR_161183, exon 2 of 2) 6173 NR_161183 107984345 NM_001369201 SMIM38 - small integral membrane protein 38 protein-coding 524-242 chr7 92217897 92218062 + 5 NA intron (NM_001013406, intron 12 of 16) L1MB4|LINE|L1 -13881 NR_031616 100302218 NR_031616 ENSG00000221520 MIR1285-1 MIRN1285-1|hsa-mir-1285-1 microRNA 1285-1 ncRNA 1319-2 chr12 5141852 5142534 + 5 NA Intergenic L1MC5a|LINE|L1 98314 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 554-20 chr1 219616071 219616281 + 5 NA Intergenic L1ME1|LINE|L1 -3031 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 3899 chr4 181721778 181723920 + 5 NA Intergenic Intergenic 107124 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 750-81 chrX 96580142 96580439 + 5 NA Intergenic (GA)n|Simple_repeat|Simple_repeat -104373 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 842-49 chr7 109083288 109083615 + 5 NA Intergenic L1PA7|LINE|L1 -198864 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 848-43 chr7 132849031 132849337 + 5 NA intron (NR_133671, intron 6 of 10) intron (NR_133671, intron 6 of 10) 90214 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 1090-5 chr14_GL000225v1_random 133456 133839 + 5 NA NA BSR/Beta|Satellite|Satellite NA NA 1193-6 chr19 53139410 53139856 + 5 NA 3' UTR (NM_001172674, exon 5 of 5) 3' UTR (NM_001172674, exon 5 of 5) -6713 NM_001352131 55786 Hs.147765 NM_018355 ENSG00000170954 ZNF415 Pact|ZfLp zinc finger protein 415 protein-coding 599-150 chrX 83180342 83180543 + 5 NA Intergenic LTR25-int|LTR|ERV1 -327848 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 998 chr1 2077561 2077984 + 5 NA intron (NM_001242874, intron 1 of 14) HAL1|LINE|L1 3786 NM_001242874 5590 Hs.496255 NM_002744 ENSG00000067606 PRKCZ PKC-ZETA|PKC2 protein kinase C zeta protein-coding 592-71 chr18 64907659 64907910 + 5 NA Intergenic Intergenic -647729 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 701-35 chr17 65933441 65933678 + 5 NA intron (NM_001353129, intron 18 of 26) L1MA7|LINE|L1 -107016 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 627-33 chr15 24581390 24581590 + 5 NA intron (NR_026646, intron 8 of 8) intron (NR_026646, intron 8 of 8) 23333 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 678-60 chr20 56726834 56726993 + 5 NA Intergenic Intergenic 97607 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 1290-8 chr8 137017273 137017725 + 5 NA Intergenic Intergenic 396089 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 935-32 chr5 28986850 28987192 + 5 NA Intergenic ERVL-B4-int|LTR|ERVL 60151 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 790-11 chr13 29706293 29706580 + 5 NA Intergenic Intergenic 58743 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 703-48 chr2 115383677 115383969 + 5 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 40008 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 602-70 chr2 173344925 173345228 + 5 NA Intergenic Intergenic -9796 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 779-17 chr12 59336169 59336373 + 5 NA Intergenic Intergenic -259758 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 1047-16 chr4 31969672 31969992 + 5 NA Intergenic Intergenic -27547 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 528-234 chr7 32102167 32102342 + 5 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -30818 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1016-5 chr14 71855953 71856586 + 5 NA Intergenic L1PB1|LINE|L1 -75902 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 683-87 chr8 57764617 57764835 + 5 NA Intergenic Intergenic 18577 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 378-53 chr10 43520574 43520681 + 5 NA Intergenic Intergenic 47832 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 667-11 chr10 30996393 30996718 + 5 NA intron (NM_001143766, intron 1 of 7) L1M4b|LINE|L1 2962 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 1520-2 chr19 27621329 27621999 + 5 NA Intergenic ALR/Alpha|Satellite|centr -171767 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 651-104 chr6 140923269 140923495 + 5 NA Intergenic Intergenic 239568 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 1105-9 chr2 79347171 79347507 + 5 NA Intergenic MIR|SINE|MIR 153505 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 776-18 chr16 27145921 27146193 + 5 NA Intergenic MER63D|DNA|hAT-Blackjack -57469 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 917-17 chr3 182399127 182399443 + 5 NA Intergenic MER121|DNA|hAT? 87077 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 586-39 chr12 23762827 23763068 + 5 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) -178361 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 558-155 chr4 70733670 70733895 + 5 NA promoter-TSS (NM_001291993) promoter-TSS (NM_001291993) -628 NM_001345840 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 1417-4 chr21 15119920 15120450 + 5 NA Intergenic Intergenic -55185 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 757-48 chr5 53015901 53016187 + 5 NA intron (NR_073107, intron 1 of 28) L1PA13|LINE|L1 26692 NR_073107 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 1153-2 chr10 74718087 74718541 + 5 NA Intergenic L1MA8|LINE|L1 -106941 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 785-47 chr5 111561683 111562043 + 5 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -49266 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 850-12 chr14 43682263 43682621 + 5 NA Intergenic Intergenic 824841 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1629-3 chr2 119615246 119615860 + 5 NA intron (NR_073132, intron 14 of 24) intron (NR_073132, intron 14 of 24) -63614 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 663-110 chr7 65226183 65226395 + 5 NA intron (NR_146906, intron 15 of 17) (TA)n|Simple_repeat|Simple_repeat 85259 NR_146905 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 992-9 chr16 79308334 79308675 + 5 NA Intergenic MIRb|SINE|MIR 292233 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 844-71 chr8 136370923 136371153 + 5 NA Intergenic Intergenic -159760 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 876-28 chr4 42800325 42800599 + 5 NA Intergenic Intergenic -92804 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 731-53 chr4 62149558 62149732 + 5 NA intron (NR_110595, intron 2 of 7) L1MA6|LINE|L1 12120 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 652-120 chr8 137516009 137516394 + 5 NA Intergenic AluSz|SINE|Alu -102613 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 928-21 chr4 32676278 32676687 + 5 NA Intergenic MSTA|LTR|ERVL-MaLR 325444 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 793-23 chr19 24380689 24380912 + 5 NA Intergenic ALR/Alpha|Satellite|centr -217353 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 779-53 chr8 64923249 64923525 + 5 NA Intergenic AluYc3|SINE|Alu -124650 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 485-273 chr7 113679169 113679269 + 5 NA Intergenic Intergenic 239790 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 898-33 chr6 72566857 72567189 + 5 NA Intergenic Intergenic -54820 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 1912 chr7 6686557 6687282 + 5 NA Intergenic AluSz|SINE|Alu 20028 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 885-4 chr11 91739915 91740275 + 5 NA Intergenic A-rich|Low_complexity|Low_complexity -484939 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 741-26 chr19 36544084 36544366 + 5 NA 3' UTR (NM_001321351, exon 6 of 6) 3' UTR (NM_001321351, exon 6 of 6) -15954 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 767-20 chr19 51917940 51918093 + 5 NA Intergenic MER1A|DNA|hAT-Charlie -9456 NM_024840 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 1339-2 chr16 58076211 58076712 + 5 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 50707 NM_002428 4324 Hs.80343 NM_002428 ENSG00000102996 MMP15 MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2 matrix metallopeptidase 15 protein-coding 631-91 chr4 32826598 32826774 + 5 NA Intergenic MER4-int|LTR|ERV1 475648 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1596-2 chr18 2040538 2041139 + 5 NA Intergenic Intergenic 530667 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 790-33 chr3 82819341 82819544 + 5 NA Intergenic MLT1E2|LTR|ERVL-MaLR 833300 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 719-18 chr12 28605455 28605710 + 5 NA Intergenic Intergenic -414844 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 1076-16 chr3 67634050 67634493 + 5 NA intron (NM_001177599, intron 1 of 10) intron (NM_001177599, intron 1 of 10) 20343 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 861-11 chr2 59874592 59875112 + 5 NA Intergenic Intergenic 508184 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 632-87 chr4 96876504 96876742 + 5 NA Intergenic LOR1a|LTR|ERV1 -490303 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 1721-4 chr8 136340277 136340897 + 5 NA Intergenic L1ME2|LINE|L1 -190211 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1530 chr11 50453562 50454059 + 5 NA Intergenic ALR/Alpha|Satellite|centr 44663 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1196-11 chr6 49096895 49097599 + 5 NA Intergenic (TATAT)n|Simple_repeat|Simple_repeat 366006 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 799 chr1 12737930 12738146 + 5 NA Intergenic L1MEg|LINE|L1 -8162 NM_152290 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 852-8 chr10 66278051 66278482 + 5 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) -647770 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 1456-4 chr2 125892502 125892968 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 225250 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 739-51 chr4 38213852 38214051 + 5 NA Intergenic Intergenic 93997 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 763-40 chr3 7690885 7691095 + 5 NA intron (NM_181874, intron 10 of 10) intron (NM_181874, intron 10 of 10) -155706 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 1703-3 chr14 65807959 65808546 + 5 NA Intergenic Intergenic 337150 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 870-38 chr8 126966775 126967083 + 5 NA Intergenic L3b|LINE|CR1 -46225 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 815-46 chr8 136353538 136353820 + 5 NA Intergenic Intergenic -177119 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1328 chr19 24366267 24366825 + 5 NA Intergenic ALR/Alpha|Satellite|centr -203099 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1201-2 chr18 5231088 5231588 + 5 NA Intergenic L1PB1|LINE|L1 6691 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 384-368 chr8 78287185 78287297 + 5 NA Intergenic L2b|LINE|L2 -229099 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 726-85 chr9 35198573 35198860 + 5 NA intron (NM_006377, intron 1 of 38) MSTA-int|LTR|ERVL-MaLR 36707 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 1055-18 chr7 30218915 30219292 + 5 NA Intergenic L1MC1|LINE|L1 -65494 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 740-41 chr2 76146789 76147092 + 5 NA Intergenic L1MB8|LINE|L1 -436025 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 782-37 chr20 41964643 41964882 + 5 NA Intergenic Charlie13b|DNA|hAT-Charlie -346385 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 1464 chr1 115489397 115489750 + 5 NA Intergenic L1MC2|LINE|L1 -151337 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 895-22 chr2 202681162 202681516 + 5 NA intron (NM_173511, intron 1 of 7) L1ME1|LINE|L1 46370 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 897-15 chr17 79638241 79638554 + 5 NA Intergenic L1MA9|LINE|L1 -27346 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 733-37 chr2 101949965 101950239 + 5 NA Intergenic Intergenic -33363 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 585-117 chr4 160779662 160779870 + 5 NA Intergenic L1MCa|LINE|L1 -1001982 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 701-52 chr20 46907888 46908227 + 5 NA intron (NM_172110, intron 1 of 13) intron (NM_172110, intron 1 of 13) 13214 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 729-84 chr9 80330274 80330551 + 5 NA Intergenic Intergenic 355389 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 741-39 chr3 60503717 60504001 + 5 NA intron (NM_001320900, intron 6 of 9) L1ME4a|LINE|L1 114011 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 981-34 chr9 96817838 96818250 + 5 NA exon (NM_001346991, exon 5 of 5) exon (NM_001346991, exon 5 of 5) 36470 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 848-16 chr17_GL000205v2_random 9678 9912 + 5 NA Intergenic CER|Satellite|Satellite 48171 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 736-88 chr8 128415389 128415830 + 5 NA intron (NR_121672, intron 5 of 7) L2a|LINE|L2 149070 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 2298-2 chr19 34761161 34761995 + 5 NA intron (NM_001007248, intron 3 of 3) L1ME3F|LINE|L1 11637 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 1203-7 chr2 52632600 52632871 + 5 NA Intergenic Intergenic 69880 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 976-21 chr6 41262384 41262829 + 5 NA Intergenic L1M2|LINE|L1 13229 NR_002794 221438 Hs.639392 NR_002794 TREML5P TLT5|TREML2P|TREML2P1 triggering receptor expressed on myeloid cells like 5, pseudogene pseudo 2012 chr2 118514896 118515696 + 5 NA Intergenic L1MC3|LINE|L1 87670 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 902-9 chr12 100397141 100397471 + 5 NA intron (NM_001145288, intron 5 of 10) MIRc|SINE|MIR 40232 NM_139319 246213 Hs.116871 NM_139319 ENSG00000179520 SLC17A8 DFNA25|VGLUT3 solute carrier family 17 member 8 protein-coding 1078-9 chr3 78997601 78998156 + 5 NA intron (NM_002941, intron 3 of 30) L2c|LINE|L2 21581 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 2905 chr2 115787101 115788427 + 5 NA intron (NM_001321912, intron 18 of 25) L1MEc|LINE|L1 443949 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1447 chr10 37878897 37879424 + 5 NA Intergenic L1ME3Cz|LINE|L1 -21057 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 1408-6 chr4 49708512 49709117 + 5 NA Intergenic ALR/Alpha|Satellite|centr 722172 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1133-11 chr8 123562673 123563211 + 5 NA Intergenic MIRc|SINE|MIR -21736 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 362-353 chr5 107127798 107127941 + 5 NA Intergenic Intergenic -116855 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 917-3 chr10 106431832 106432125 + 5 NA Intergenic L1M4|LINE|L1 291813 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 786-18 chr12 112744609 112744860 + 5 NA intron (NM_001347952, intron 1 of 21) MIRb|SINE|MIR -46804 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 1185-8 chr7 84420643 84421160 + 5 NA Intergenic L1P3|LINE|L1 -111575 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 806-42 chr3 193248662 193249099 + 5 NA intron (NM_020386, intron 1 of 3) L1MA7|LINE|L1 7101 NR_026877 84789 Hs.676481 NM_032703 MGC2889 - uncharacterized protein MGC2889 ncRNA 1915-3 chr4 53084750 53085671 + 5 NA intron (NM_152540, intron 5 of 8) L1MA2|LINE|L1 222893 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 714-13 chr11 43070537 43070749 + 5 NA Intergenic Intergenic 198726 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 980-3 chr1 159499353 159499738 + 5 NA Intergenic L1M2|LINE|L1 36462 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 1131-2 chr12 34561352 34561777 + 5 NA Intergenic ALR/Alpha|Satellite|centr 539068 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 915-5 chr18 3357067 3357444 + 5 NA Intergenic L1MA9|LINE|L1 -6696 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 932-16 chr4 45240979 45241312 + 5 NA Intergenic L1MB2|LINE|L1 -514511 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 925-3 chr1 179722297 179722647 + 5 NA Intergenic Intergenic -5304 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 475-133 chr2 81778923 81779075 + 5 NA Intergenic L1MEc|LINE|L1 -312053 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1254-6 chr5 24412733 24413193 + 5 NA Intergenic Intergenic 232015 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 701-22 chr14 49481641 49481868 + 5 NA Intergenic Intergenic 104626 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 2243 chr2 44875820 44876892 + 5 NA Intergenic HAL1|LINE|L1 62532 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 942-35 chr6 39589975 39590237 + 5 NA intron (NM_001289020, intron 7 of 21) intron (NM_001289020, intron 7 of 21) 135302 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 372-46 chr10 61144238 61144329 + 5 NA Intergenic Arthur1B|DNA|hAT-Tip100 128008 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 2615 chr19 43858405 43859750 + 5 NA Intergenic L1MA5A|LINE|L1 21059 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 970-14 chr20 11350662 11350915 + 5 NA Intergenic Intergenic -77405 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 834 chr1 106053292 106053460 + 5 NA Intergenic MLT1A0|LTR|ERVL-MaLR -25123 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 956-9 chr12 77134164 77134385 + 5 NA Intergenic Intergenic -68705 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 970-4 chr12 128659115 128659612 + 5 NA intron (NM_001136103, intron 4 of 8) intron (NM_001136103, intron 4 of 8) 164595 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 849-7 chr11 112992971 112993187 + 5 NA intron (NM_181351, intron 1 of 18) HAL1|LINE|L1 -29619 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 668-73 chr4 41724411 41724621 + 5 NA Intergenic Intergenic 24454 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 475-285 chr8 103966570 103966728 + 5 NA intron (NR_145711, intron 12 of 21) L1MC1|LINE|L1 147429 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 818-57 chr7 7440538 7440800 + 5 NA intron (NM_001037763, intron 21 of 34) intron (NM_001037763, intron 21 of 34) 95204 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 690-103 chr8 129232875 129233082 + 5 NA intron (NR_033916, intron 1 of 2) L1PA17|LINE|L1 8262 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 923-15 chr22 25820353 25820695 + 5 NA intron (NM_001318245, intron 12 of 43) intron (NM_001318245, intron 12 of 43) 78336 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 622-21 chr12 18975102 18975237 + 5 NA Intergenic Tigger15a|DNA|TcMar-Tigger -154564 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 581-172 chr8 82493080 82493327 + 5 NA Intergenic L1MC4|LINE|L1 -418901 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 766-9 chr11 42935363 42935630 + 5 NA Intergenic L1MA8|LINE|L1 333873 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 1398-3 chr16 34585819 34586389 + 5 NA Intergenic Intergenic -204624 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 845-18 chr2 79537993 79538225 + 5 NA intron (NM_001282598, intron 1 of 17) Tigger11a|DNA|TcMar-Tigger 14926 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 786-17 chr12 39862774 39863037 + 5 NA intron (NM_052885, intron 6 of 9) L1MA4|LINE|L1 236722 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 880-35 chr5 105756795 105757233 + 5 NA Intergenic AluJb|SINE|Alu 657540 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 917-24 chr7 62886030 62886329 + 5 NA Intergenic ALR/Alpha|Satellite|centr 417877 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 814-28 chr18 10043369 10043649 + 5 NA Intergenic L1ME4b|LINE|L1 129493 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 1235-7 chr8 139183060 139183548 + 5 NA Intergenic L1MA5A|LINE|L1 -269263 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 889-17 chr18 8957509 8957812 + 5 NA Intergenic Intergenic -145039 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 1282-6 chr8 142050833 142051351 + 5 NA Intergenic L1MD1|LINE|L1 -125247 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 1915 chr17 65644681 65645423 + 5 NA intron (NM_001353129, intron 24 of 26) HAL1b|LINE|L1 -83404 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 499-231 chr6 142035877 142036059 + 5 NA Intergenic MSTB|LTR|ERVL-MaLR 52831 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 973-12 chr2 26896331 26896682 + 5 NA intron (NM_001253724, intron 1 of 12) L1MA8|LINE|L1 48082 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 1146 chr1 12662516 12662906 + 5 NA intron (NM_001013630, intron 3 of 3) intron (NM_001013630, intron 3 of 3) 18164 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 865-13 chr13 39442519 39442784 + 5 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 160542 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 933-27 chr3 61472172 61472552 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger -89209 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 1141-6 chr2 240075259 240075981 + 5 NA Intergenic Intergenic -29548 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 1178 chr11 132569482 132570047 + 5 NA intron (NM_002545, intron 2 of 6) L1MEi|LINE|L1 285462 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 589-83 chr22 19318196 19318406 + 5 NA Intergenic AluJo|SINE|Alu -26582 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 1058-13 chr20 22092966 22093342 + 5 NA Intergenic L1M4a2|LINE|L1 39064 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 956-22 chr6 41390683 41391034 + 5 NA Intergenic MLT1G3|LTR|ERVL-MaLR 55250 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 995-13 chr2 175340975 175341423 + 5 NA Intergenic L1MA4A|LINE|L1 -159489 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 790-22 chr2 34223802 34224043 + 5 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 156696 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 2100-2 chr8 101480009 101480773 + 5 NA Intergenic Intergenic -12048 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 415-45 chr11 48212678 48212872 + 5 NA Intergenic Intergenic -4035 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 1276-3 chr2 107321460 107322019 + 5 NA intron (NR_049853, intron 1 of 3) MIRb|SINE|MIR 27786 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 843-19 chr15 97130077 97130310 + 5 NA Intergenic Intergenic 346758 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 1021-2 chr10 63515848 63516359 + 5 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -5298 NM_001001330 221035 Hs.499833 NM_001001330 ENSG00000165476 REEP3 C10orf74|Yip2b receptor accessory protein 3 protein-coding 780-36 chr3 18093103 18093324 + 5 NA intron (NR_161333, intron 4 of 4) MLT1A0|LTR|ERVL-MaLR 130661 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 1051-10 chr20 48156637 48157120 + 5 NA Intergenic LTR8A|LTR|ERV1 -166761 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 1057 chr1 247789960 247790472 + 5 NA Intergenic MER66-int|LTR|ERV1 25513 NM_001001966 284532 Hs.626620 NM_001001966 ENSG00000196772 OR14A16 OR5AT1 olfactory receptor family 14 subfamily A member 16 protein-coding 1599-2 chr11 50545022 50545712 + 5 NA Intergenic ALR/Alpha|Satellite|centr 136220 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1464-5 chr3 98173755 98174371 + 5 NA Intergenic MER34B-int|LTR|ERV1 5363 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 750-25 chr18 13718442 13718613 + 5 NA intron (NM_001098801, intron 1 of 4) intron (NM_001098801, intron 1 of 4) 8031 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 2097 chr5 150931560 150932253 + 5 NA non-coding (NR_026867, exon 5 of 5) non-coding (NR_026867, exon 5 of 5) 14678 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 783-31 chr16 76143925 76144168 + 5 NA Intergenic Intergenic -133355 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 2703 chr17 26884547 26885673 + 5 NA Intergenic ALR/Alpha|Satellite|centr 204131 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 1030-8 chr11 103651495 103651954 + 5 NA Intergenic MIRc|SINE|MIR -198182 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 878-6 chr1 245777483 245777947 + 5 NA intron (NM_022743, intron 10 of 11) L1M4a1|LINE|L1 -543198 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 973-14 chr2 213450340 213450864 + 5 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 166138 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 689-86 chr6 66966908 66967118 + 5 NA Intergenic L1MB3|LINE|L1 -1088338 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 661-94 chr9 34818206 34818477 + 5 NA Intergenic L1MC|LINE|L1 20245 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 876-20 chr2 48893499 48893835 + 5 NA Intergenic L2c|LINE|L2 -137943 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 1412-4 chr2 209856272 209856645 + 5 NA intron (NM_032504, intron 22 of 63) L1ME3D|LINE|L1 84465 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 911-8 chr14 72773531 72773787 + 5 NA intron (NM_001280542, intron 1 of 10) L1MB3|LINE|L1 118990 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 522-84 chr14 82127563 82127708 + 5 NA Intergenic L2b|LINE|L2 -384497 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 1360-7 chr6 54471059 54471540 + 5 NA Intergenic Intergenic 162858 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 684-109 chr6 65337345 65337578 + 5 NA intron (NM_198283, intron 9 of 9) LTR37-int|LTR|ERV1 36043 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 937-27 chr5 26364901 26365257 + 5 NA Intergenic THE1D-int|LTR|ERVL-MaLR 673507 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 689-67 chr4 33940770 33941081 + 5 NA intron (NR_125902, intron 4 of 4) L2a|LINE|L2 98968 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 994 chr1 11510230 11510686 + 5 NA intron (NM_020780, intron 3 of 20) L1MEc|LINE|L1 31303 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 3115 chr2 128469275 128470626 + 5 NA Intergenic Intergenic -151082 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 1094-4 chr15 99373428 99373869 + 5 NA intron (NR_135755, intron 8 of 8) L1MA2|LINE|L1 116123 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 802 chr1 72970905 72971183 + 5 NA Intergenic MIR|SINE|MIR -335126 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 952-28 chr8 126576123 126576506 + 5 NA Intergenic MER5A|DNA|hAT-Charlie -17836 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 1099-20 chr5 52333268 52333733 + 5 NA Intergenic Intergenic 325469 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 948-33 chr7 38048525 38048884 + 5 NA Intergenic L1MA4A|LINE|L1 127385 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 1899-3 chr2 95214725 95215572 + 5 NA Intergenic Intergenic 49339 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 752-26 chr16 81907342 81907525 + 5 NA intron (NM_002661, intron 15 of 32) intron (NM_002661, intron 15 of 32) 104037 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 1144-5 chr2 11890519 11890941 + 5 NA Intergenic MIRc|SINE|MIR -53744 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 1311-3 chr12 34418942 34419313 + 5 NA Intergenic ALR/Alpha|Satellite|centr 396631 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 2577 chr2 113000010 113000968 + 5 NA Intergenic L1MEg|LINE|L1 -4970 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 1054-11 chr3 186877158 186877557 + 5 NA Intergenic L1ME2|LINE|L1 -15989 NR_046662 100874095 Hs.638968 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 622-151 chr9 32061680 32061825 + 5 NA Intergenic L1PB3|LINE|L1 -322851 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 719-22 chr13 76802583 76802934 + 5 NA Intergenic Intergenic 83647 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 596-70 chr15 54381491 54381714 + 5 NA intron (NM_001329919, intron 16 of 31) L1MA8|LINE|L1 368954 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 727-61 chr5 7802312 7802503 + 5 NA intron (NM_020546, intron 21 of 24) intron (NM_020546, intron 21 of 24) 48726 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 782-63 chr7 85307750 85308037 + 5 NA Intergenic Intergenic -113229 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 835-3 chr1 106835618 106835789 + 5 NA intron (NR_147165, intron 2 of 2) L1MC1|LINE|L1 17464 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 1798 chr8 139562584 139563585 + 5 NA Intergenic Intergenic 140039 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1242-6 chr18 38640510 38641107 + 5 NA Intergenic Intergenic 981367 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 1358 chr11 31729583 31730133 + 5 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 70803 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 1321-4 chr14 72772329 72772997 + 5 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 119986 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 730-68 chr6 169535356 169535590 + 5 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 166556 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 912-8 chr11 41163959 41164325 + 5 NA intron (NM_001258419, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger 295494 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1415-4 chr20 63147409 63148131 + 5 NA Intergenic L1ME2|LINE|L1 -30730 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 949-13 chr21 14529389 14529652 + 5 NA intron (NM_001286523, intron 1 of 8) intron (NM_001286523, intron 1 of 8) 16795 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 733-83 chr8 136204662 136204915 + 5 NA Intergenic MIRb|SINE|MIR -326010 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 851-48 chr8 138091479 138091899 + 5 NA Intergenic L1MEc|LINE|L1 -8144 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 1391-2 chr2 63164632 63165096 + 5 NA intron (NR_148704, intron 16 of 18) L1M4|LINE|L1 -45322 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 717-36 chr17 72255008 72255268 + 5 NA Intergenic Intergenic -87673 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 959-2 chr1 187612699 187612915 + 5 NA Intergenic HAL1ME|LINE|L1 169179 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 1212-7 chr3 806395 806708 + 5 NA intron (NR_110118, intron 2 of 3) intron (NR_110118, intron 2 of 3) 214446 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 1266-3 chr6 27441635 27442067 + 5 NA intron (NR_144688, intron 5 of 8) MamRep605|LTR?|LTR? 31047 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 1095-12 chr8 84311147 84311718 + 5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -104052 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 902-42 chr8 137775578 137775935 + 5 NA Intergenic Intergenic 307789 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 745-82 chr9 71522863 71523040 + 5 NA Intergenic L1ME3E|LINE|L1 -75980 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 857-10 chr10 72979678 72980096 + 5 NA Intergenic L1MA5A|LINE|L1 -25081 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 2912 chr3 44733100 44734512 + 5 NA intron (NM_145044, intron 2 of 2) intron (NM_145044, intron 2 of 2) 4171 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 3630 chr5 46010174 46011681 + 5 NA Intergenic ALR/Alpha|Satellite|centr -314547 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 573-34 chr11 23714247 23714518 + 5 NA Intergenic L1P4|LINE|L1 -295192 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 721-79 chr7 41205163 41205407 + 5 NA Intergenic Intergenic 103681 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 932-33 chr8 77403360 77403747 + 5 NA Intergenic Intergenic -47144 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 836-24 chr15 69754272 69754593 + 5 NA Intergenic Intergenic -80802 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 574-3 chr1 69200019 69200178 + 5 NA Intergenic Intergenic 144200 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 1884-2 chr8 87103103 87103908 + 5 NA intron (NM_173538, intron 4 of 10) THE1C|LTR|ERVL-MaLR 237090 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1225-6 chr5 145890058 145890502 + 5 NA Intergenic AluSz|SINE|Alu -17312 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin and cysteine rich domain containing 2 protein-coding 1524-4 chr8 139524898 139525514 + 5 NA Intergenic Intergenic 177917 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 658-122 chr8 87572243 87572548 + 5 NA Intergenic Intergenic 301620 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 3777 chr7 6677542 6678924 + 5 NA Intergenic Intergenic 28714 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 1247-4 chr2 12864678 12865207 + 5 NA Intergenic L1MEc|LINE|L1 127575 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 1088-9 chr5 92509720 92510068 + 5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1061449 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 436-8 chr1 74143655 74143817 + 5 NA intron (NM_001105659, intron 4 of 7) (ATTATAT)n|Simple_repeat|Simple_repeat 54440 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 1195-8 chr22_KI270736v1_random 157884 158306 + 5 NA NA (GAATG)n|Satellite|Satellite NA NA 746-5 chr1 108791926 108792210 + 5 NA intron (NM_007269, intron 11 of 18) L1ME1|LINE|L1 45394 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 1481-7 chr8 130711213 130711691 + 5 NA Intergenic L2a|LINE|L2 -267778 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 853-5 chr11 128008167 128008451 + 5 NA Intergenic L1PA11|LINE|L1 -200457 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 617-45 chr15 68909836 68910038 + 5 NA Intergenic Intergenic -20563 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 891-37 chr7 78521487 78521680 + 5 NA exon (NM_012301, exon 4 of 22) exon (NM_012301, exon 4 of 22) 174341 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 854-9 chr10 67685544 67685949 + 5 NA intron (NM_013266, intron 1 of 17) HERV9N-int|LTR|ERV1 10449 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 1398-4 chr19 40015323 40016042 + 5 NA exon (NM_001297763, exon 7 of 7) exon (NM_001297763, exon 7 of 7) 18622 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 953-31 chr9 24305241 24305574 + 5 NA Intergenic Intergenic 240269 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 1160-6 chr22 35295867 35296125 + 5 NA TTS (NR_027780) TTS (NR_027780) -3279 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 660-28 chr14 46559207 46559481 + 5 NA Intergenic Intergenic 87985 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 865-2 chr1 58111447 58111687 + 5 NA intron (NM_001353980, intron 1 of 5) MER103C|DNA|hAT-Charlie 138936 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 587-173 chr8 136973460 136973616 + 5 NA Intergenic L1MD3|LINE|L1 440050 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1395-4 chr5 106825436 106826150 + 5 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 185221 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 815-48 chrX 38947791 38947962 + 5 NA Intergenic MIRb|SINE|MIR -143993 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 1420-4 chr8 121947313 121947837 + 5 NA Intergenic L2b|LINE|L2 -306135 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 995-10 chr2 18009204 18009531 + 5 NA Intergenic L1ME3A|LINE|L1 130700 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 1515-2 chr12 132925059 132925586 + 5 NA 3' UTR (NM_183238, exon 5 of 5) 3' UTR (NM_183238, exon 5 of 5) 30984 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 827-41 chr5 53714878 53715194 + 5 NA Intergenic L1PA16|LINE|L1 104646 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 765-5 chr10 107380018 107380265 + 5 NA Intergenic ERVL-B4-int|LTR|ERVL -215435 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 924-22 chr2 40380042 40380345 + 5 NA intron (NM_001351483, intron 2 of 8) MIRc|SINE|MIR 50111 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 1604 chr2 34519502 34520261 + 5 NA Intergenic L1ME3|LINE|L1 -157676 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 1158-9 chr5 9346928 9347461 + 5 NA intron (NM_003966, intron 3 of 22) Charlie14a|DNA|hAT-Charlie -164139 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 490-275 chr7 108841073 108841223 + 5 NA Intergenic MIR|SINE|MIR 43439 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 991-11 chr16 77013983 77014346 + 5 NA Intergenic Intergenic 145228 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 772-7 chr1 218062716 218062970 + 5 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 19338 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 928-26 chr5 165019168 165019497 + 5 NA Intergenic Intergenic 549053 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 866-8 chr10 62695870 62696120 + 5 NA Intergenic MER102a|DNA|hAT-Charlie -108725 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 1053-7 chr14 53656453 53656864 + 5 NA Intergenic Intergenic 291826 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 1030-25 chr8 138648978 138649402 + 5 NA intron (NM_152888, intron 46 of 64) intron (NM_152888, intron 46 of 64) -151460 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 986 chr1 44145220 44145713 + 5 NA Intergenic L1MB3|LINE|L1 -3835 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 747-8 chr10 75443705 75443929 + 5 NA intron (NM_001305581, intron 2 of 6) L1M3|LINE|L1 12193 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 622-113 chr5 165116973 165117216 + 5 NA Intergenic Intergenic 646815 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 1329-4 chr8 124946204 124946749 + 5 NA intron (NR_027321, intron 3 of 3) L1M4b|LINE|L1 4468 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 934-16 chr2 46730939 46731252 + 5 NA intron (NM_144949, intron 1 of 1) L2b|LINE|L2 31800 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 531-4 chr1 68779179 68779415 + 5 NA Intergenic Intergenic -276601 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 765-7 chr10 126794727 126795029 + 5 NA Intergenic L1MCa|LINE|L1 -110531 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 672-46 chr18 68560843 68561058 + 5 NA Intergenic Intergenic 154158 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 1070 chr1 81219288 81219627 + 5 NA Intergenic Intergenic -86735 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 1167-12 chr2 160639706 160640202 + 5 NA Intergenic Intergenic -146147 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 340-551 chr8 122905823 122905906 + 5 NA intron (NM_001362797, intron 3 of 4) MADE1|DNA|TcMar-Mariner 119908 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 864-3 chr10 62847377 62847587 + 5 NA Intergenic Intergenic -28315 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 799-48 chr6 86349589 86349857 + 5 NA Intergenic Intergenic -587805 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 856-39 chr5 127257342 127257546 + 5 NA Intergenic LTR48|LTR|ERV1 -33320 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 830-6 chr10 81233892 81234314 + 5 NA Intergenic L1PA10|LINE|L1 584306 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 1108-18 chr8 10873922 10874387 + 5 NA Intergenic Intergenic 34128 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 788-18 chr14 82095866 82096116 + 5 NA Intergenic Intergenic -352853 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 848-32 chr4 55583878 55584199 + 5 NA intron (NM_152401, intron 1 of 5) L1M2|LINE|L1 8207 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 1016-22 chr7 52798995 52799270 + 5 NA Intergenic Intergenic -236501 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 1185-10 chr8 135477493 135477946 + 5 NA intron (NM_006558, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 20263 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 508-52 chr12 113970791 113970921 + 5 NA Intergenic Intergenic -4531 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 556-73 chr16 8267521 8267643 + 5 NA Intergenic L1PB1|LINE|L1 322256 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1132-6 chr19 37153400 37153775 + 5 NA exon (NM_152655, exon 6 of 6) exon (NM_152655, exon 6 of 6) 18849 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 687-129 chr9 110855810 110856176 + 5 NA Intergenic MER21C|LTR|ERVL 127731 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 871-24 chr4 52275067 52275268 + 5 NA Intergenic L1PREC2|LINE|L1 223863 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 2770 chr2 212862033 212862908 + 5 NA Intergenic Intergenic -63787 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 1004-14 chr5 24895696 24896109 + 5 NA Intergenic ERVL-E-int|LTR|ERVL -55319 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 952-17 chr20 40352574 40352932 + 5 NA Intergenic L1MA9|LINE|L1 336483 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 1114-7 chr8 83319323 83319689 + 5 NA Intergenic Intergenic -84252 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 991-2 chr1 92919433 92919657 + 5 NA intron (NM_001006605, intron 1 of 4) L2c|LINE|L2 41917 NM_001006605 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 811-38 chr5 85572936 85573177 + 5 NA Intergenic Intergenic -709388 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 889-2 chr10 31673476 31673770 + 5 NA Intergenic Intergenic 235303 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 816-47 chr8 117269957 117270221 + 5 NA Intergenic L1M2|LINE|L1 135094 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 496-216 chr5 71743278 71743473 + 5 NA Intergenic L1ME3F|LINE|L1 24100 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 1720-3 chr9 69696834 69697369 + 5 NA Intergenic L1MA8|LINE|L1 -24730 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 994-15 chr6 161712353 161712722 + 5 NA intron (NM_004562, intron 7 of 11) L3|LINE|CR1 241560 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 510-3 chr1 57776113 57776279 + 5 NA intron (NM_001353980, intron 3 of 5) Tigger4a|DNA|TcMar-Tigger -84385 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 1238-4 chr13 73440560 73441169 + 5 NA Intergenic MER61-int|LTR|ERV1 -123380 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 984-5 chr17 16579135 16579539 + 5 NA Intergenic L1MA7|LINE|L1 -10125 NM_001346168 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 1015-17 chr7 42654162 42654553 + 5 NA Intergenic Intergenic 52090 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 764-58 chr5 164068222 164068508 + 5 NA Intergenic Intergenic 399037 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 890-12 chr15 100028457 100028770 + 5 NA intron (NM_139057, intron 18 of 21) MIR|SINE|MIR 221590 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 602-108 chr5 110145547 110145719 + 5 NA Intergenic Arthur1|DNA|hAT-Tip100 262451 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 899-31 chr8 62490086 62490404 + 5 NA intron (NM_001304533, intron 1 of 6) MLT2C1|LTR|ERVL 241391 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 577-135 chr4 105098068 105098293 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger -47695 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 909-31 chr8 135934180 135934523 + 5 NA Intergenic Intergenic 476895 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 953-20 chr4 98400896 98401280 + 5 NA intron (NM_021159, intron 6 of 14) intron (NM_021159, intron 6 of 14) 139704 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 1467-2 chr14 56936032 56936508 + 5 NA Intergenic L1MC5|LINE|L1 123112 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 792-48 chr5 45964574 45964884 + 5 NA Intergenic ALR/Alpha|Satellite|centr -268349 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 632-67 chr21 15162343 15162524 + 5 NA Intergenic L1MB8|LINE|L1 -97433 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 774-82 chr7 71830704 71830981 + 5 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 506549 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 1222-2 chr1 199229577 199229976 + 5 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 81178 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 1442-2 chr14 47156861 47157286 + 5 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 186173 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 620-80 chr22 33871785 33871984 + 5 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 48544 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 885-8 chr14 63073224 63073546 + 5 NA Intergenic Intergenic -27927 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 913-40 chr8 36971266 36971677 + 5 NA Intergenic L2b|LINE|L2 187097 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 749-101 chr8 137366933 137367218 + 5 NA Intergenic Intergenic 46513 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 673-121 chr8 119764284 119764453 + 5 NA intron (NM_003184, intron 18 of 25) intron (NM_003184, intron 18 of 25) 68473 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 465-126 chr2 52824636 52824792 + 5 NA Intergenic Intergenic -122099 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 1592 chr16 60340954 60341442 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 18595 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 871-14 chr2 191493659 191493955 + 5 NA Intergenic LTR1F1|LTR|ERV1 -184265 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 710-89 chr8 21397511 21397701 + 5 NA Intergenic L1ME3E|LINE|L1 99367 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 1182-15 chr7 42464761 42465116 + 5 NA Intergenic Intergenic -227729 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 771-7 chr1 231424886 231425145 + 5 NA promoter-TSS (NM_022051) promoter-TSS (NM_022051) 29 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 830 chr1 84723946 84724196 + 5 NA Intergenic Intergenic -33603 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 1567-4 chr6 113269464 113269970 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger 163730 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 824-10 chr14 48041860 48042152 + 5 NA Intergenic MIR|SINE|MIR -246992 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 831-45 chr7 24462998 24463258 + 5 NA Intergenic Intergenic -110324 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 989-21 chr5 2976208 2976652 + 5 NA Intergenic L2|LINE|L2 58576 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 621-8 chr1 182919583 182919765 + 5 NA intron (NM_030933, intron 6 of 9) intron (NM_030933, intron 6 of 9) 33492 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 867-44 chr8 137297213 137297477 + 5 NA Intergenic LTR81AB|LTR|Gypsy 116243 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 947 chr1 49538091 49538502 + 5 NA intron (NR_136623, intron 2 of 12) L1PB4|LINE|L1 -66211 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 1807-2 chr17_GL000205v2_random 41563 42293 + 5 NA Intergenic HERVL66-int|LTR|ERVL 16038 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 2825 chr14 68150322 68151379 + 5 NA intron (NM_133509, intron 7 of 10) L1MEc|LINE|L1 327258 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 891-8 chr12 90396259 90396504 + 5 NA Intergenic L1MB2|LINE|L1 103063 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 1871 chr4_GL000008v2_random 3217 3882 + 5 NA Intergenic Intergenic 174622 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 1064-5 chr16 9199381 9199973 + 5 NA Intergenic MER113|DNA|hAT-Charlie 108033 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 1039-11 chr2 195253926 195254372 + 5 NA Intergenic HAL1b|LINE|L1 -402809 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 715-52 chr3 88979806 88980192 + 5 NA Intergenic Intergenic -127622 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 980-9 chr2 98673984 98674282 + 5 NA intron (NM_012214, intron 4 of 15) intron (NM_012214, intron 4 of 15) -10660 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 966-21 chr5 117265924 117266265 + 5 NA Intergenic L1MEg|LINE|L1 -149418 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 947-28 chr8 79281015 79281369 + 5 NA Intergenic Intergenic -50996 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 696-85 chr5 33033631 33033846 + 5 NA Intergenic Intergenic 86295 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 986-30 chr5 178961118 178961502 + 5 NA TTS (NM_001323309) TTS (NM_001323309) 20112 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 1243-2 chr15 52900323 52900741 + 5 NA Intergenic L1MA3|LINE|L1 -110196 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 942-30 chr4 161371941 161372413 + 5 NA Intergenic L1M4b|LINE|L1 -650556 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 1162-4 chr2 26659990 26660665 + 5 NA Intergenic L1MEc|LINE|L1 -18961 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 1536-2 chr7 3505198 3505869 + 5 NA intron (NM_152744, intron 1 of 44) AluJo|SINE|Alu 204281 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1051-21 chr9 84611103 84611363 + 5 NA Intergenic Intergenic -57225 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 634-88 chr20 22569520 22569764 + 5 NA intron (NR_001558, intron 1 of 3) intron (NR_001558, intron 1 of 3) 9000 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 1737 chr5 155885244 155885679 + 5 NA Intergenic Intergenic -441296 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 1528-2 chr6 62711668 62712338 + 5 NA Intergenic L1ME1|LINE|L1 -425776 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 546-190 chr5 67190143 67190280 + 5 NA intron (NM_005582, intron 1 of 2) L1MC4|LINE|L1 6588 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 1145-3 chr14 56972291 56972622 + 5 NA Intergenic Intergenic 159298 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 1534-3 chr4 60373590 60374085 + 5 NA Intergenic L1MB3|LINE|L1 -548782 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 703-21 chr11 102900753 102900935 + 5 NA Intergenic L2a|LINE|L2 -25862 NM_002426 4321 Hs.1695 NM_002426 ENSG00000262406 MMP12 HME|ME|MME|MMP-12 matrix metallopeptidase 12 protein-coding 1555 chr2 170911754 170912516 + 5 NA Intergenic L1M4|LINE|L1 -16342 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 1226-6 chr4 34507390 34507704 + 5 NA Intergenic Intergenic -237800 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 886-13 chr18 6778192 6778518 + 5 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -48493 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 795-22 chr16 75172150 75172354 + 5 NA TTS (NM_153688).2 TTS (NM_153688).2 23201 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 1439-7 chr7 18261978 18262376 + 5 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -27915 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 662-83 chr6 40026736 40026939 + 5 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -92375 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 589-68 chr2 86371089 86371261 + 5 NA Intergenic L1ME4a|LINE|L1 -33092 NM_001164730 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 1434-8 chrX 58422246 58422785 + 5 NA Intergenic ALR/Alpha|Satellite|centr -511882 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 1138-9 chr17_KI270729v1_random 3724 4187 + 5 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 744-2 chr1 97908002 97908183 + 5 NA intron (NM_000110, intron 1 of 22) AluJb|SINE|Alu 12967 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 909-28 chr8 107102117 107102303 + 5 NA Intergenic Intergenic 234305 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 1030 chr1 30530927 30531226 + 5 NA Intergenic L1ME1|LINE|L1 -187696 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 386-349 chr8 84316136 84316281 + 5 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -99276 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 727-98 chrX 124266730 124266958 + 5 NA Intergenic Intergenic -65816 NM_001355534 100132015 NM_001355534 ENSG00000282419 TEX13D - TEX13 family member D protein-coding 720-36 chr18 5206627 5206834 + 5 NA Intergenic Intergenic -8978 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 2086 chr1 227608593 227609545 + 5 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 45513 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 728-75 chr5 91456360 91456531 + 5 NA Intergenic Intergenic -73128 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 1197-10 chr7 61930183 61930573 + 5 NA Intergenic ALR/Alpha|Satellite|centr 1373678 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1029-18 chr8 115049589 115050161 + 5 NA Intergenic L1MB1|LINE|L1 618138 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 657-43 chr17 82682113 82682407 + 5 NA intron (NM_006822, intron 1 of 5) L1ME1|LINE|L1 -13953 NR_039751 100616196 NR_039751 ENSG00000266107 MIR4525 - microRNA 4525 ncRNA 993-12 chr2 23101686 23102050 + 5 NA Intergenic L1MCb|LINE|L1 -283311 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 1344-3 chr5 107142345 107142908 + 5 NA Intergenic L1MEj|LINE|L1 -131612 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 480-265 chr6 163797592 163797741 + 5 NA Intergenic MER110-int|LTR|ERV1 -126182 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 1556 chr19 24381949 24382825 + 5 NA Intergenic ALR/Alpha|Satellite|centr -218940 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1072-15 chr4 47429894 47430484 + 5 NA Intergenic Intergenic 33513 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 632-72 chr3 21246511 21246682 + 5 NA Intergenic L1MCa|LINE|L1 -159130 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 1376-3 chr15 100425161 100425676 + 5 NA intron (NR_120374, intron 3 of 4) MSTA-int|LTR|ERVL-MaLR 52479 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 521-58 chr12 3980965 3981135 + 5 NA Intergenic Intergenic -107602 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 1127-3 chr2 29909395 29909789 + 5 NA intron (NM_004304, intron 1 of 28) L1MEc|LINE|L1 11994 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 563-127 chr3 90584908 90585036 + 5 NA Intergenic ALR/Alpha|Satellite|centr 1477351 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 812-15 chr12 88701764 88702073 + 5 NA Intergenic Intergenic -121445 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 935-22 chr2 216894100 216894312 + 5 NA Intergenic MIR|SINE|MIR 23434 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 1688 chr12 52734746 52735515 + 5 NA Intergenic Intergenic -31606 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 785-26 chr2 41890014 41890482 + 5 NA intron (NR_033996, intron 1 of 2) MLT1J|LTR|ERVL-MaLR 12693 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 830-44 chr5 139922238 139922441 + 5 NA intron (NM_013983, intron 1 of 10) L1MC1|LINE|L1 120960 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 816-11 chr15 93960183 93960497 + 5 NA intron (NR_120320, intron 6 of 8) L1ME1|LINE|L1 59639 NR_120323 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 1878 chr7 383672 384370 + 5 NA Intergenic L1MD2|LINE|L1 4596 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 885-32 chr9 28550860 28551330 + 5 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 168210 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 948-26 chr3 60459952 60460252 + 5 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 157768 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 769-29 chr2 126338959 126339124 + 5 NA Intergenic L1PA16|LINE|L1 -221056 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 1355-3 chr19 28615164 28615693 + 5 NA TTS (NR_135636) TTS (NR_135636) 8740 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 842-15 chr18 1036709 1037016 + 5 NA Intergenic L1PA17|LINE|L1 -108869 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 1543-2 chr20 55624540 55625157 + 5 NA Intergenic (TATAT)n|Simple_repeat|Simple_repeat -197651 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 745-69 chr7 54214952 54215252 + 5 NA Intergenic L1M1|LINE|L1 -115595 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 971-14 chr3 44718300 44718608 + 5 NA intron (NM_001282880, intron 3 of 4) L2|LINE|L2 5794 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 1777-3 chr20 42127503 42128313 + 5 NA intron (NM_133170, intron 20 of 31) intron (NM_133170, intron 20 of 31) -509531 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 582-108 chr4 58517410 58517647 + 5 NA Intergenic Intergenic 18800 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 3397 chr7 34124011 34125699 + 5 NA intron (NM_133468, intron 14 of 15) L1M5|LINE|L1 219316 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 590-183 chrX 82453260 82453449 + 5 NA Intergenic L1PA7|LINE|L1 -1054936 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 970-15 chr21 24710237 24710585 + 5 NA Intergenic L1PA16|LINE|L1 -130139 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 964-3 chr10 39119051 39119445 + 5 NA Intergenic ALR/Alpha|Satellite|centr 422652 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 869-22 chr17 13181633 13181873 + 5 NA Intergenic LTR54B|LTR|ERV1 125007 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 876 chr1 77249036 77249246 + 5 NA Intergenic L1MA5|LINE|L1 -29711 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 757-44 chr5 5032130 5032414 + 5 NA Intergenic L1M5|LINE|L1 -2087 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 860-21 chr17 57387824 57388123 + 5 NA intron (NM_001322250, intron 5 of 13) MIRb|SINE|MIR 130954 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 1197-8 chr5 140091055 140091502 + 5 NA Intergenic Intergenic 16734 NR_102740 100505636 Hs.438871 NR_102739 ENSG00000245146 MALINC1 LINC01024|MA-linc1 mitosis associated long intergenic non-coding RNA 1 ncRNA 3379 chr8 86236368 86237388 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger -6497 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 1134-7 chr15 69925877 69926364 + 5 NA Intergenic MIRb|SINE|MIR 90886 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 773-7 chr12 102696395 102696725 + 5 NA Intergenic L1MA2|LINE|L1 127839 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 1518-2 chr18 13198848 13199448 + 5 NA Intergenic L1MB3|LINE|L1 -19612 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 778-11 chr10 111490393 111490656 + 5 NA Intergenic L1M1|LINE|L1 376233 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 737-24 chr14 68529387 68529607 + 5 NA intron (NM_001321818, intron 10 of 10) L1MEi|LINE|L1 99290 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 672-17 chr11 114837526 114837859 + 5 NA Intergenic L1MEd|LINE|L1 159165 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 863-38 chr5 141260915 141261110 + 5 NA Intergenic Intergenic 15617 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 806-14 chr13 25648752 25648958 + 5 NA intron (NM_016529, intron 24 of 36) MER2|DNA|TcMar-Tigger 180081 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 833-15 chr2 108002460 108002744 + 5 NA intron (NM_021815, intron 6 of 8) intron (NM_021815, intron 6 of 8) 16078 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 1521-8 chr5 110303240 110303720 + 5 NA Intergenic L1MA1|LINE|L1 210435 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 757-62 chr8 70885018 70885363 + 5 NA Intergenic L1MC2|LINE|L1 215851 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 644-100 chr8 36399630 36399821 + 5 NA Intergenic Intergenic -384649 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 748-14 chr10 44157526 44157823 + 5 NA Intergenic L1MDa|LINE|L1 -135076 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 670-60 chr2 44623685 44623896 + 5 NA intron (NM_024766, intron 3 of 10) L1ME2|LINE|L1 261843 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 1514-2 chr19 34952879 34953557 + 5 NA Intergenic L1MB3|LINE|L1 11011 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 592-64 chr17 68821990 68822145 + 5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 133325 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 1100-9 chr19 39592547 39592835 + 5 NA Intergenic AluJb|SINE|Alu -9833 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 1063 chr1 82554977 82555361 + 5 NA Intergenic L2a|LINE|L2 -348014 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 913-22 chr2 237122145 237122347 + 5 NA Intergenic Intergenic 36357 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 897-12 chr12 59298473 59298780 + 5 NA Intergenic MLT1F|LTR|ERVL-MaLR -297403 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 1533-2 chr10 69276647 69277309 + 5 NA intron (NM_001322365, intron 2 of 22) L1MEh|LINE|L1 -1518 NM_001358263 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 1610-2 chr5 167677420 167677940 + 5 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -77249 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 1226-5 chr22 34012382 34013027 + 5 NA Intergenic L1MC3|LINE|L1 -89816 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 1082-15 chr8 64436531 64437030 + 5 NA Intergenic L1PA3|LINE|L1 57631 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 382-184 chr2 49393666 49393910 + 5 NA Intergenic L2a|LINE|L2 -239261 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 734-57 chr5 25183149 25183327 + 5 NA intron (NR_147006, intron 1 of 4) intron (NR_147006, intron 1 of 4) 7418 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 834-21 chr2 54932620 54932857 + 5 NA intron (NM_001039753, intron 27 of 40) intron (NM_001039753, intron 27 of 40) 77534 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 653-19 chr10 113317313 113317561 + 5 NA Intergenic Intergenic 188166 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 860-31 chr2 193237321 193237544 + 5 NA Intergenic Intergenic 487587 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 1074-2 chr10 7705190 7705556 + 5 NA intron (NM_002216, intron 2 of 20) intron (NM_002216, intron 2 of 20) 2057 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 785-8 chr1 112097118 112097393 + 5 NA Intergenic ERVL-E-int|LTR|ERVL 106719 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 966-8 chr14 97428481 97428811 + 5 NA Intergenic MLT1B|LTR|ERVL-MaLR -30170 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 727-32 chr14 61150716 61151030 + 5 NA Intergenic Intergenic 130465 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 2377 chr2 44613566 44614501 + 5 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 252086 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 811-24 chr2 67561843 67562173 + 5 NA Intergenic Intergenic 164675 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 763-4 chr1 233951257 233951475 + 5 NA intron (NM_173508, intron 2 of 7) Tigger3c|DNA|TcMar-Tigger 46690 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 557-71 chr17 61618740 61618990 + 5 NA Intergenic Intergenic -27646 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 1957 chr14 45335712 45336520 + 5 NA Intergenic L1MA5A|LINE|L1 -82914 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 934-24 chr4 71119224 71119624 + 5 NA Intergenic AluJr|SINE|Alu -67835 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 2076-2 chr5 66104817 66105582 + 5 NA Intergenic L1MB2|LINE|L1 -39101 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 676-121 chr9 82281988 82282261 + 5 NA Intergenic L1M5|LINE|L1 293352 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 1203-8 chr2 129111133 129111678 + 5 NA Intergenic L1ME1|LINE|L1 162486 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 1600-5 chr6 40203304 40203981 + 5 NA Intergenic L1MA9|LINE|L1 152364 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 1217-4 chr3 178682172 178682687 + 5 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 123579 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 1456-2 chr11 34465273 34465826 + 5 NA intron (NM_001752, intron 10 of 12) intron (NM_001752, intron 10 of 12) 26615 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 1968 chr22 34266892 34267507 + 5 NA Intergenic L1ME3A|LINE|L1 -344311 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 751-41 chr20 59768034 59768328 + 5 NA intron (NM_080672, intron 5 of 12) intron (NM_080672, intron 5 of 12) 46971 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1182-11 chr22 23228067 23228513 + 5 NA intron (NM_004327, intron 1 of 22) L1MEf|LINE|L1 -34477 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 467-39 chr11 5277685 5277805 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -7800 NM_005330 3046 Hs.655195 NM_005330 ENSG00000213931 HBE1 HBE hemoglobin subunit epsilon 1 protein-coding 834-6 chr12 72600558 72600807 + 5 NA intron (NM_013381, intron 12 of 18) Tigger1|DNA|TcMar-Tigger -327173 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 769-52 chr5 74351411 74351608 + 5 NA Intergenic Intergenic 29023 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 989-18 chr4 33640774 33641153 + 5 NA Intergenic Intergenic 398930 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 636-159 chr9 77112452 77112635 + 5 NA Intergenic L1MC4|LINE|L1 -64902 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 827-13 chr13 43105509 43106079 + 5 NA intron (NM_013238, intron 5 of 5) intron (NM_013238, intron 5 of 5) -7371 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 882-15 chr17 54204689 54204979 + 5 NA Intergenic Tigger18a|DNA|TcMar-Tigger 381907 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 745-43 chr4 35714019 35714245 + 5 NA Intergenic L1MA4A|LINE|L1 529807 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 894-47 chr7 62784068 62784349 + 5 NA Intergenic ALR/Alpha|Satellite|centr 519848 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1006-29 chr8 46870531 46870980 + 5 NA Intergenic L1PA13|LINE|L1 29869 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 809-28 chr20 53426148 53426425 + 5 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -126484 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 2086-2 chr8 131727122 131727953 + 5 NA Intergenic Intergenic -176556 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 756-16 chr15 62217448 62217712 + 5 NA Intergenic MER4B-int|LTR|ERV1 -14262 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 500-185 chr3 80930319 80930492 + 5 NA Intergenic Intergenic -63463 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 1189-7 chr8 117347186 117347541 + 5 NA Intergenic THE1C|LTR|ERVL-MaLR -173350 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 1064-9 chr21 32035669 32036293 + 5 NA Intergenic Intergenic 50314 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 654-107 chr6 130803951 130804223 + 5 NA Intergenic L1MB3|LINE|L1 -23318 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 752-79 chr8 142371004 142371300 + 5 NA intron (NM_001366903, intron 1 of 9) L1MC|LINE|L1 32030 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1388-2 chr17 5083414 5083824 + 5 NA intron (NM_153018, intron 1 of 1) MER5A|DNA|hAT-Charlie 5152 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 883-28 chr3 193416821 193417101 + 5 NA intron (NM_032279, intron 25 of 29) L1M4|LINE|L1 -38208 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 960-24 chr2 153590567 153590937 + 5 NA Intergenic L1PB4|LINE|L1 -111990 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 1518-3 chr7 5063553 5064112 + 5 NA exon (NM_021163, exon 5 of 5) exon (NM_021163, exon 5 of 5) -8228 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 1332-2 chr14 47101662 47102004 + 5 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 241413 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 994-12 chr5 41975034 41975550 + 5 NA Intergenic L1MCa|LINE|L1 50011 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 559-106 chr20 6323301 6323451 + 5 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat -103356 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 463-302 chr9 21936862 21936988 + 5 NA Intergenic MER34B-int|LTR|ERV1 -30214 NR_024274 51198 Hs.721053 NM_016349 CDKN2A-DT C9orf53|CDKN2A-AS1|bA149I2.3 CDKN2A divergent transcript ncRNA 587-52 chr15 37753015 37753258 + 5 NA Intergenic Intergenic -181471 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 1455-3 chr19 24377845 24378491 + 5 NA Intergenic ALR/Alpha|Satellite|centr -214721 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1208-4 chr14 46558734 46559097 + 5 NA Intergenic MER58A|DNA|hAT-Charlie 87556 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 827-20 chr19 52145095 52145427 + 5 NA Intergenic Intergenic -5323 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 1002-17 chr6 38308376 38308729 + 5 NA intron (NM_052893, intron 8 of 11) intron (NM_052893, intron 8 of 11) -173044 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 575-149 chr5 54203195 54203485 + 5 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 107233 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 755-73 chr8 136394477 136394712 + 5 NA Intergenic Intergenic -136204 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 401-324 chr8 107046769 107046877 + 5 NA Intergenic Intergenic -276579 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 1124-2 chr19 27592744 27593199 + 5 NA Intergenic ALR/Alpha|Satellite|centr -200460 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1221-2 chr19 37395702 37396217 + 5 NA Intergenic Intergenic 24860 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 1071-21 chr6 118405229 118405531 + 5 NA Intergenic ERVL-E-int|LTR|ERVL -95993 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 651-32 chr12 124753959 124754259 + 5 NA Intergenic MIRc|SINE|MIR 85562 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 1575 chr12 37934215 37934949 + 5 NA Intergenic ALR/Alpha|Satellite|centr -382192 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 826-49 chr4 45737693 45737943 + 5 NA Intergenic Intergenic 386236 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 1236-4 chr18 7345643 7346111 + 5 NA Intergenic L1ME1|LINE|L1 114773 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 893-14 chr12 18233554 18233854 + 5 NA Intergenic L1MA4A|LINE|L1 -27836 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 704-86 chr8 126608140 126608322 + 5 NA Intergenic Tigger13a|DNA|TcMar-Tigger -49753 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 951-9 chr14 87905068 87905583 + 5 NA Intergenic LTR78B|LTR|ERV1 87857 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 756-25 chr2 52259810 52260026 + 5 NA intron (NR_135237, intron 7 of 10) L1ME3Cz|LINE|L1 -110730 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 1297-7 chr5 40169401 40169970 + 5 NA Intergenic L1PA16|LINE|L1 117394 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 711-61 chr5 141435500 141435746 + 5 NA intron (NM_003735, intron 1 of 3) intron (NM_003735, intron 1 of 3) 5116 NM_032094 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 623-102 chr5 35931858 35932037 + 5 NA intron (NM_144647, intron 1 of 4) intron (NM_144647, intron 1 of 4) 6675 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 865-37 chr5 178934373 178934649 + 5 NA Intergenic L2|LINE|L2 -6687 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 672-94 chr6 50373414 50373752 + 5 NA Intergenic L1MB8|LINE|L1 -323654 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 1262-7 chr2 60183746 60184177 + 5 NA Intergenic L1MC3|LINE|L1 199075 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 3758 chr8 71075755 71077098 + 5 NA Intergenic L1MA7|LINE|L1 280280 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 781-56 chr6 18550009 18550365 + 5 NA intron (NR_149116, intron 3 of 7) intron (NR_149116, intron 3 of 7) -21597 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 1224-11 chr8 132151674 132152103 + 5 NA intron (NM_001204824, intron 9 of 14) MER61-int|LTR|ERV1 -46623 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 717-72 chr6 2125123 2125380 + 5 NA intron (NM_001500, intron 1 of 10) AluJo|SINE|Alu 50740 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 634-40 chr12 28616955 28617141 + 5 NA Intergenic L1MA3|LINE|L1 -426310 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 816-20 chr19 43913319 43913543 + 5 NA exon (NM_003425, exon 10 of 10) exon (NM_003425, exon 10 of 10) -11628 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 682-64 chr3 109058877 109059045 + 5 NA intron (NM_014429, intron 12 of 27) intron (NM_014429, intron 12 of 27) -42495 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 949-14 chr3 34827252 34827724 + 5 NA Intergenic Tigger4b|DNA|TcMar-Tigger 566535 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 730-8 chr10 44546720 44546976 + 5 NA Intergenic L1MD1|LINE|L1 -161751 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 837-21 chr2 144619685 144619958 + 5 NA Intergenic Intergenic -48146 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 1949 chr10 94708065 94708904 + 5 NA intron (NM_000772, intron 5 of 8) intron (NM_000772, intron 5 of 8) 24755 NM_001128925 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 1160-7 chr4 46917778 46918372 + 5 NA TTS (NM_001204266) TTS (NM_001204266) -8830 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 1000-2 chr10 12420328 12420683 + 5 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) 31523 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 555-57 chr14 70109309 70109502 + 5 NA intron (NM_033262, intron 2 of 7) L1MEf|LINE|L1 -29188 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 1267-3 chr14 66261448 66261926 + 5 NA Intergenic L1MA9|LINE|L1 -224684 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 576-35 chr12 90285034 90285308 + 5 NA Intergenic Intergenic -8147 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 714-75 chr8 128130755 128130930 + 5 NA Intergenic L1M4a1|LINE|L1 -19274 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 633-102 chr6 22446480 22446640 + 5 NA Intergenic Intergenic -123006 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 803-56 chr8 62829530 62829809 + 5 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -148192 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 958-13 chr18 35626378 35626735 + 5 NA Intergenic Intergenic -28013 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 947-13 chr19 52385243 52385593 + 5 NA 3' UTR (NM_001145434, exon 4 of 4) 3' UTR (NM_001145434, exon 4 of 4) 12339 NR_125345 102724105 Hs.188680 NR_125345 ENSG00000269834 ZNF528-AS1 - ZNF528 antisense RNA 1 ncRNA 1190-8 chr5 51067275 51067768 + 5 NA Intergenic L1PA8|LINE|L1 -97334 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 571-130 chr5 29969761 29970018 + 5 NA Intergenic L1ME1|LINE|L1 89329 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 636-68 chr2 32549071 32549324 + 5 NA intron (NM_016252, intron 64 of 73) intron (NM_016252, intron 64 of 73) 17044 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 864-11 chr14 45584558 45584878 + 5 NA Intergenic L1M2|LINE|L1 130884 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 890-20 chr20 39302704 39303041 + 5 NA Intergenic Intergenic -78124 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 1230-6 chr2 40173860 40174364 + 5 NA intron (NM_001112800, intron 4 of 8) intron (NM_001112800, intron 4 of 8) 256192 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 772-37 chr3 71389768 71390049 + 5 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) -85137 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 1052-12 chr19 37821337 37821808 + 5 NA intron (NR_040013, intron 3 of 4) MLT1F2|LTR|ERVL-MaLR 4161 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 768-6 chr10 43034383 43034728 + 5 NA Intergenic L1MB3|LINE|L1 36992 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 478-173 chr22 35601199 35601357 + 5 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 16051 NM_005368 4151 Hs.517586 NM_005368 ENSG00000198125 MB PVALB|myoglobgin myoglobin protein-coding 1598-5 chr7 18248545 18249201 + 5 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -41219 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 822-36 chr20 13373862 13374154 + 5 NA Intergenic L1M4b|LINE|L1 -134321 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 1075-13 chr6 22543444 22543817 + 5 NA Intergenic L2a|LINE|L2 -25936 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 798-30 chr2 166665916 166666183 + 5 NA Intergenic Intergenic -179078 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 1127-4 chr4 30491428 30492094 + 5 NA Intergenic L1M4b|LINE|L1 -228608 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 555-137 chr4 36725405 36725694 + 5 NA Intergenic MIRb|SINE|MIR -83649 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 1258 chr1 4286114 4286654 + 5 NA Intergenic L1PA15|LINE|L1 -125667 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 1788-2 chr6 27449611 27450232 + 5 NA TTS (NM_001318893) TTS (NM_001318893) 22977 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 874-34 chr8 130572274 130572586 + 5 NA Intergenic Arthur1|DNA|hAT-Tip100 -128756 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 1152-6 chr4 77641717 77642404 + 5 NA Intergenic LTR16A|LTR|ERVL 130307 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 931-22 chr5 161016786 161017078 + 5 NA Intergenic L1M3|LINE|L1 -78306 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 818-47 chr4 156428527 156428721 + 5 NA Intergenic Intergenic -474758 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 499-130 chr2 156836026 156836216 + 5 NA Intergenic MER58C|DNA|hAT-Charlie 399742 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 821-47 chr5 82902017 82902235 + 5 NA Intergenic L1M4|LINE|L1 -42290 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 688-104 chr8 78395861 78396091 + 5 NA Intergenic L1MB7|LINE|L1 -120364 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 666-47 chr18 46440308 46440523 + 5 NA intron (NM_152470, intron 3 of 7) MER44A|DNA|TcMar-Tigger 78671 NM_001173129 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 2446 chr8 122322649 122323864 + 5 NA Intergenic L2a|LINE|L2 245388 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 768-50 chr8 17109113 17109405 + 5 NA intron (NR_146233, intron 12 of 15) intron (NR_146233, intron 12 of 15) -47223 NM_016353 51201 Hs.728241 NM_016353 ENSG00000104219 ZDHHC2 DHHC2|ZNF372 zinc finger DHHC-type containing 2 protein-coding 830-2 chr1 85390895 85391181 + 5 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) 13468 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 875-38 chr9 101587376 101587610 + 5 NA intron (NM_133445, intron 6 of 8) L2c|LINE|L2 7476 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 1063-15 chr2 105664062 105664451 + 5 NA Intergenic L1ME2|LINE|L1 -53697 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 2633 chr20 56033511 56034498 + 5 NA Intergenic L1MEg|LINE|L1 -28485 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 690-83 chr5 44237958 44238300 + 5 NA Intergenic L1MC4|LINE|L1 -150603 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 569-72 chr18 1271879 1272110 + 5 NA intron (NR_110327, intron 4 of 4) intron (NR_110327, intron 4 of 4) 87635 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1066-5 chr12 22126673 22127117 + 5 NA Intergenic Intergenic 80677 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 1684-2 chr19 24356441 24357126 + 5 NA Intergenic ALR/Alpha|Satellite|centr -193336 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1044-11 chr19 58196482 58196886 + 5 NA intron (NM_133502, intron 4 of 7) intron (NM_133502, intron 4 of 7) 13623 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 1192-3 chr2 4397540 4398027 + 5 NA Intergenic L1M4|LINE|L1 258439 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 792-29 chr2 22580848 22581263 + 5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 44576 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 807-40 chr3 113419352 113419520 + 5 NA intron (NR_046728, intron 2 of 5) intron (NR_046728, intron 2 of 5) 12764 NR_107043 102466253 NR_107043 ENSG00000275670 MIR8076 hsa-mir-8076 microRNA 8076 ncRNA 1023-22 chr8 24628571 24628812 + 5 NA Intergenic L2a|LINE|L2 -80073 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 966-18 chr4 143061536 143061741 + 5 NA Intergenic L1ME3G|LINE|L1 123223 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 374-99 chr14 46556133 46556294 + 5 NA Intergenic MER1B|DNA|hAT-Charlie 84854 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 963-11 chr14 71251831 71252106 + 5 NA Intergenic L1MA2|LINE|L1 -68508 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 722-48 chr21 27686883 27687054 + 5 NA Intergenic L1M4|LINE|L1 -35411 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1047-3 chr11 55385581 55386047 + 5 NA Intergenic Intergenic 17930 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 586-11 chr1 156584165 156584411 + 5 NA intron (NM_001105669, intron 5 of 9) intron (NM_001105669, intron 5 of 9) 2923 NM_001105669 164118 Hs.447851 NM_001105669 ENSG00000187862 TTC24 - tetratricopeptide repeat domain 24 protein-coding 540-33 chr10 115882463 115882672 + 5 NA intron (NM_207303, intron 28 of 28) L2b|LINE|L2 312222 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 1267 chr1 49404520 49405037 + 5 NA intron (NR_046839, intron 3 of 3) intron (NR_046839, intron 3 of 3) 67307 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 704-44 chr2 116395226 116395391 + 5 NA Intergenic Intergenic 1051493 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1156-7 chr3 28098395 28098891 + 5 NA Intergenic L1M4b|LINE|L1 -142976 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 870-10 chr16 71447429 71447687 + 5 NA TTS (NM_001304494) TTS (NM_001304494) -5504 NM_001367365 684-40 chr15 96899076 96899296 + 5 NA Intergenic Intergenic 115751 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 1055-8 chr2 12859826 12860304 + 5 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 122698 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 537-99 chr19 37018992 37019122 + 5 NA Intergenic L1MB3|LINE|L1 -59165 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 1906-2 chr22 28394186 28394941 + 5 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -65306 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 1086-13 chr2 41658704 41659044 + 5 NA Intergenic Intergenic -218681 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 966 chr1 192881613 192881969 + 5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 66466 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 1192 chr13 112084591 112085130 + 5 NA intron (NR_120392, intron 1 of 3) L1ME1|LINE|L1 17711 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 591-53 chr17 58853907 58854168 + 5 NA intron (NM_014906, intron 1 of 6) L1MB3|LINE|L1 98168 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 803-3 chr1 94450760 94450978 + 5 NA intron (NM_002858, intron 1 of 22) L1MEd|LINE|L1 32480 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 844-42 chr20 22091659 22092037 + 5 NA Intergenic L1M4b|LINE|L1 37758 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 1308 chr14 50473002 50473494 + 5 NA intron (NM_198794, intron 9 of 31) intron (NM_198794, intron 9 of 31) 59321 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 1714 chr1 195114649 195115242 + 5 NA Intergenic Intergenic 973770 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 557-204 chr8 122165397 122165544 + 5 NA Intergenic L1MEd|LINE|L1 403174 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1354 chr10 43616435 43617090 + 5 NA exon (NM_001318140, exon 5 of 5) exon (NM_001318140, exon 5 of 5) 10324 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 1043-9 chr5 72442034 72442309 + 5 NA 3' UTR (NM_152625, exon 5 of 5) 3' UTR (NM_152625, exon 5 of 5) 65239 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 742-19 chr12 17564986 17565198 + 5 NA Intergenic L1MA7|LINE|L1 23986 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 1280-2 chr19 44255673 44256058 + 5 NA Intergenic L1M4|LINE|L1 -4015 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 843-11 chr11 97940524 97940784 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger -1080295 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 850-2 chr1 227323897 227324132 + 5 NA Intergenic MLT1G|LTR|ERVL-MaLR -5522 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 1359-3 chr2 129547414 129547831 + 5 NA Intergenic L1ME2|LINE|L1 -273731 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 1644-4 chr9 35142404 35143215 + 5 NA Intergenic LTR19-int|LTR|ERV1 -19200 NM_001371189 1262-9 chr7 61943384 61943754 + 5 NA Intergenic ALR/Alpha|Satellite|centr 1360487 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1002-16 chr6 22533962 22534387 + 5 NA Intergenic LTR79|LTR|ERVL -35392 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 1002-8 chr20 56335497 56335873 + 5 NA Intergenic LTR8A|LTR|ERV1 -23289 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 843-13 chr12 37914646 37914981 + 5 NA Intergenic ALR/Alpha|Satellite|centr -401961 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1022-25 chr8 24170569 24171132 + 5 NA Intergenic L1MCc|LINE|L1 -123190 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 429-146 chr2 49564875 49565040 + 5 NA Intergenic Intergenic 409246 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 720-3 chr1 113525008 113525373 + 5 NA intron (NM_001142782, intron 1 of 20) THE1B|LTR|ERVL-MaLR 134675 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 991-12 chr19 27603254 27603680 + 5 NA Intergenic ALR/Alpha|Satellite|centr -189964 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 650-40 chr17 72813234 72813456 + 5 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -172873 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 1163-15 chr8 103674360 103674825 + 5 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -144628 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 1408-4 chr21 23091504 23092207 + 5 NA Intergenic AluSp|SINE|Alu 12571 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 748-85 chr8 123710287 123710501 + 5 NA intron (NM_001003954, intron 3 of 11) L1MB7|LINE|L1 26999 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 978-3 chr1 190873946 190874438 + 5 NA Intergenic Intergenic 249302 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 1324 chr12 66199461 66200068 + 5 NA intron (NM_001142523, intron 1 of 10) intron (NM_001142523, intron 1 of 10) 10550 NM_007199 11213 Hs.369265 NM_007199 ENSG00000090376 IRAK3 ASRT5|IRAKM interleukin 1 receptor associated kinase 3 protein-coding 849-8 chr12 12648753 12649099 + 5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 37050 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 685-57 chr2 241557081 241557252 + 5 NA intron (NR_033346, intron 1 of 1) L1M5|LINE|L1 -1579 NM_032515 666 Hs.293753 NM_032515 ENSG00000176720 BOK BCL2L9|BOKL BCL2 family apoptosis regulator BOK protein-coding 927-17 chr5 56336598 56336889 + 5 NA Intergenic MER63C|DNA|hAT-Blackjack -103413 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 505-204 chr3 175941475 175941591 + 5 NA Intergenic L1M2|LINE|L1 -165200 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 615-138 chr8 76796126 76796333 + 5 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -112954 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 875-24 chr4 38452246 38452526 + 5 NA intron (NR_110951, intron 4 of 7) intron (NR_110951, intron 4 of 7) -57381 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 617-40 chr15 25045148 25045356 + 5 NA intron (NR_146177, intron 23 of 147) L1MB7|LINE|L1 3278 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 702-103 chr8 95379534 95379716 + 5 NA intron (NR_038209, intron 2 of 3) L3|LINE|CR1 -110424 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 659-13 chr11 18837058 18837329 + 5 NA Intergenic MIRb|SINE|MIR -44472 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 770-50 chr3 103571229 103571418 + 5 NA Intergenic Intergenic -47207 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 1177-10 chr8 34640904 34641291 + 5 NA Intergenic L1ME3E|LINE|L1 -142824 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 951-8 chr14 50020289 50020611 + 5 NA intron (NR_131171, intron 6 of 8) MLT1H|LTR|ERVL-MaLR -12930 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 507-201 chr5 99798354 99798572 + 5 NA Intergenic Intergenic 264473 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 850-8 chr11 79006103 79006415 + 5 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 395850 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 1015-5 chr14 68530525 68530971 + 5 NA intron (NM_001321818, intron 10 of 10) L1MEi|LINE|L1 98039 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 732-6 chr1 222231782 222232078 + 5 NA Intergenic Intergenic -253410 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 1346-3 chr20 40830296 40830730 + 5 NA Intergenic L2b|LINE|L2 -115890 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 522-23 chr10 69564015 69564187 + 5 NA Intergenic Intergenic 9321 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 2306 chr5 73384832 73385985 + 5 NA Intergenic MLT1L|LTR|ERVL-MaLR 47502 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 818-42 chr4 82764456 82764724 + 5 NA intron (NM_001037582, intron 1 of 4) L1MEc|LINE|L1 -11160 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 642-10 chr10 41875368 41875527 + 5 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 492598 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 624-122 chr8 131536303 131536546 + 5 NA Intergenic Intergenic -367669 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 823-28 chr6 119553044 119553316 + 5 NA intron (NR_134600, intron 2 of 3) L1PA17|LINE|L1 3372 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 902-19 chr2 15148572 15148882 + 5 NA Intergenic MER57A-int|LTR|ERV1 412607 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1327-7 chr3 44735708 44736247 + 5 NA 3' UTR (NM_001258280, exon 3 of 3) 3' UTR (NM_001258280, exon 3 of 3) 6342 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 745-53 chr5 68577859 68578084 + 5 NA Intergenic Intergenic 285394 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 762-79 chr8 142311506 142311779 + 5 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 91540 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1006-7 chr13 64774415 64774724 + 5 NA Intergenic Intergenic -698558 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 673-5 chr1 108863113 108863352 + 5 NA Intergenic LTR54B|LTR|ERV1 -4988 NR_049760 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 2390 chr1 247189252 247190122 + 5 NA Intergenic L1M4|LINE|L1 12373 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 1684 chr10 123458075 123458548 + 5 NA Intergenic L2b|LINE|L2 -208044 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 1629-5 chr4 37083490 37084228 + 5 NA Intergenic L1MB7|LINE|L1 82080 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 2316 chr1 227650172 227651092 + 5 NA intron (NM_178549, intron 3 of 3) L1MA9|LINE|L1 47075 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 630-32 chr14 65825144 65825277 + 5 NA Intergenic UCON75|Unknown|Unknown 354108 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 1030-22 chr8 101941919 101942462 + 5 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -42242 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 1146-6 chr15 62211092 62211537 + 5 NA Intergenic MER4B-int|LTR|ERV1 -7996 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 1276 chr15 46171196 46171771 + 5 NA Intergenic MER67B|LTR|ERV1 466288 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 1092-2 chr1 217212185 217212626 + 5 NA Intergenic Intergenic -74703 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 1186-3 chr10 131523651 131524175 + 5 NA Intergenic Intergenic -212192 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 385-318 chr6 24628222 24628317 + 5 NA intron (NM_001350409, intron 1 of 21) intron (NM_001350409, intron 1 of 21) 17752 NM_001168376 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 872-29 chr20 58120446 58120721 + 5 NA Intergenic L1MC3|LINE|L1 -30319 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 617-22 chr11 96486111 96486334 + 5 NA intron (NR_047481, intron 1 of 4) MLT1L|LTR|ERVL-MaLR 20655 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 882-16 chr17 57795256 57795613 + 5 NA Intergenic L1MEc|LINE|L1 -50135 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 757-6 chr10 31551943 31552144 + 5 NA Intergenic Intergenic -152288 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 979-6 chr12 20957659 20958057 + 5 NA intron (NM_001371097, intron 13 of 15) L1PA10|LINE|L1 -57838 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 717-74 chr7 26054900 26055182 + 5 NA Intergenic L1ME3D|LINE|L1 -97157 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 690-39 chr14 80383727 80384001 + 5 NA intron (NR_038355, intron 4 of 8) MIR|SINE|MIR -152807 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 589-140 chr6 54201864 54202043 + 5 NA intron (NM_001281746, intron 10 of 11) intron (NM_001281746, intron 10 of 11) 90510 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 1864-2 chr7 36938409 36939158 + 5 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -19351 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 681-69 chr5 171765683 171765950 + 5 NA Intergenic MIRb|SINE|MIR -20056 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 880-22 chr2 80202129 80202365 + 5 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 102505 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 1019-2 chr1 165988885 165989397 + 5 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat 81220 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 707 chr1 14091441 14091723 + 5 NA Intergenic Intergenic 328391 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 953-18 chr3 193922439 193922753 + 5 NA Intergenic Intergenic 71642 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 656-127 chr8 103268098 103268282 + 5 NA intron (NR_148215, intron 3 of 3) LTR79|LTR|ERVL -30304 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 2408 chr11 54863284 54864046 + 5 NA Intergenic ALR/Alpha|Satellite|centr 156833 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 3051 chr20 58968679 58969832 + 5 NA Intergenic L1MA4|LINE|L1 -12001 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 795-58 chr8 83939503 83939838 + 5 NA Intergenic L1MA9|LINE|L1 -243117 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1319-7 chr7 7326620 7327257 + 5 NA Intergenic Intergenic 71784 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 603-2 chr1 69335590 69335853 + 5 NA Intergenic Intergenic -97534 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 664-101 chr6 152912976 152913190 + 5 NA Intergenic L1PA15|LINE|L1 69958 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 1295-4 chr2 59429216 59429856 + 5 NA Intergenic L2a|LINE|L2 211828 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 929-25 chr4 76853440 76853799 + 5 NA Intergenic L1M5|LINE|L1 44525 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 919 chr1 195301841 195302201 + 5 NA Intergenic Intergenic 786694 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 667-43 chr19 53166690 53166936 + 5 NA intron (NM_001353458, intron 4 of 4) intron (NM_001353458, intron 4 of 4) -7753 NM_001172674 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 1355-7 chr5 104595636 104596341 + 5 NA Intergenic HERVFH19-int|LTR|ERV1 -503486 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 1916 chr5 150907662 150908334 + 5 NA Intergenic Intergenic -3015 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 966-22 chr6 40104322 40104704 + 5 NA Intergenic Intergenic -170051 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1826 chr14 25617696 25618350 + 5 NA Intergenic L1MEc|LINE|L1 -567726 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 451-216 chr7 49173563 49173715 + 5 NA Intergenic Intergenic 249092 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 870-21 chr22 34890690 34891023 + 5 NA intron (NR_138042, intron 3 of 4) THE1D|LTR|ERVL-MaLR 107060 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1344 chr19 53249058 53249836 + 5 NA intron (NM_001317998, intron 3 of 4) intron (NM_001317998, intron 3 of 4) 5403 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 948-3 chr1 237180622 237181095 + 5 NA intron (NM_001035, intron 1 of 104) (AT)n|Simple_repeat|Simple_repeat 138674 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 831-9 chr11 97432649 97432861 + 5 NA Intergenic Intergenic 924330 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1055-4 chr14 43122552 43122972 + 5 NA Intergenic Intergenic 1384521 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 657-34 chr16 48467358 48467584 + 5 NA Intergenic L1ME3A|LINE|L1 -82058 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 755-12 chr10 115222459 115222701 + 5 NA intron (NM_207303, intron 9 of 28) L1MEg|LINE|L1 129215 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 904-30 chr4 37205531 37205931 + 5 NA Intergenic Intergenic 36260 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 1125-3 chr15 94532201 94532649 + 5 NA Intergenic MLT2D|LTR|ERVL 176495 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 855-37 chr4 380635 380983 + 5 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 30652 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 1375 chr10 43770952 43771520 + 5 NA Intergenic L1MEc|LINE|L1 7589 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 850-25 chr2 216932152 216932443 + 5 NA Intergenic Intergenic 61525 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 553-209 chr6 155870798 155870956 + 5 NA Intergenic Intergenic -75920 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 506-63 chr12 15192874 15193032 + 5 NA intron (NM_032918, intron 2 of 4) L1MC4a|LINE|L1 28464 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 2843 chr12 9902416 9903634 + 5 NA intron (NM_207375, intron 4 of 4) LTR10B2|LTR|ERV1 21536 NM_001190765 100431172 Hs.725113 NM_001190765 ENSG00000256797 KLRF2 NKp65 killer cell lectin like receptor F2 protein-coding 1263-7 chr8 144975088 144975733 + 5 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -19455 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 973-8 chr15 79708313 79708692 + 5 NA Intergenic L1MA4|LINE|L1 188495 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 575-71 chr17 71862529 71862758 + 5 NA Intergenic Intergenic 163336 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 738-43 chr3 79340927 79341160 + 5 NA intron (NM_002941, intron 2 of 30) L1ME4c|LINE|L1 -70684 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 1005-22 chr8 136780150 136780522 + 5 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 249538 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 874-16 chr22 48958908 48959336 + 5 NA Intergenic Intergenic 92352 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 1480-2 chr13 26623693 26624383 + 5 NA intron (NM_006646, intron 2 of 9) L1MEc|LINE|L1 66335 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 1911 chr2 165485052 165485863 + 5 NA intron (NM_001172173, intron 1 of 6) intron (NM_001172173, intron 1 of 6) 15759 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 1199-2 chr12 14523098 14523710 + 5 NA intron (NM_024829, intron 6 of 10) L1MA6|LINE|L1 -44328 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 753-58 chr8 121217181 121217493 + 5 NA Intergenic Intergenic -405291 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 667-63 chr3 26080780 26081010 + 5 NA Intergenic LTR33A|LTR|ERVL -207200 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 890-32 chr7 18341796 18342116 + 5 NA intron (NM_001321896, intron 1 of 12) L1MEc|LINE|L1 51864 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 569-21 chr10 36529707 36529860 + 5 NA Intergenic L1MCa|LINE|L1 -596074 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 890-2 chr1 199887109 199887419 + 5 NA Intergenic Intergenic -140446 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 838-29 chr5 160890738 160890936 + 5 NA Intergenic AluJr|SINE|Alu -38626 NM_001366652 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 1011-14 chr4 94328444 94328836 + 5 NA intron (NM_014485, intron 2 of 5) intron (NM_014485, intron 2 of 5) 14196 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 1642 chr20 54737784 54738376 + 5 NA Intergenic L1PA13|LINE|L1 262487 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 1337-8 chr8 110227263 110227724 + 5 NA Intergenic Intergenic -251722 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 3169 chr13 93015934 93017335 + 5 NA Intergenic L1ME3E|LINE|L1 -28707 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 2176 chr4 38299816 38300768 + 5 NA Intergenic L1M1|LINE|L1 -66622 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 1462-2 chr8 131112509 131113091 + 5 NA Intergenic L1MA1|LINE|L1 -71891 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 1180-9 chr5 38303136 38303614 + 5 NA intron (NM_152403, intron 1 of 21) MamTip3|DNA|hAT-Tip100 -12389 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 845-9 chr15 94130657 94130976 + 5 NA Intergenic L1PB4|LINE|L1 -22878 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 1293-3 chr19 30315597 30316062 + 5 NA Intergenic Intergenic -56555 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 694-36 chr14 38658391 38658572 + 5 NA Intergenic Intergenic -224115 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 1023-5 chr10 43496905 43497360 + 5 NA Intergenic Intergenic 60021 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 960-8 chr12 61125901 61126352 + 5 NA Intergenic L1MA4A|LINE|L1 1066713 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 734-23 chr17 61432006 61432265 + 5 NA Intergenic Tigger4|DNA|TcMar-Tigger -20287 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 844-72 chr8 138426501 138426730 + 5 NA intron (NM_001362965, intron 1 of 19) L1ME3A|LINE|L1 70646 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 908-12 chr18 1710353 1710633 + 5 NA Intergenic Intergenic -350864 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 866-35 chr5 42307522 42307740 + 5 NA Intergenic MER5A|DNA|hAT-Charlie -115808 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 766-38 chr2 154184810 154185093 + 5 NA intron (NM_052917, intron 4 of 12) L1M4c|LINE|L1 240557 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 926-18 chr3 89766044 89766359 + 5 NA Intergenic Intergenic 658580 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1154-6 chr20 58487932 58488302 + 5 NA intron (NR_130908, intron 1 of 1) MER44D|DNA|TcMar-Tigger 26821 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 843-6 chr10 106963286 106963542 + 5 NA intron (NM_001206569, intron 1 of 25) AluY|SINE|Alu 201292 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 810-52 chr7 99938062 99938325 + 5 NA Intergenic L1M4|LINE|L1 -8573 NM_181538 349149 Hs.647524 NM_181538 ENSG00000176402 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein gamma 3 protein-coding 1675 chr13 22301385 22302285 + 5 NA Intergenic L1MEc|LINE|L1 91550 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 1340-4 chr19 36447557 36448139 + 5 NA 3' UTR (NM_001145343, exon 5 of 5) 3' UTR (NM_001145343, exon 5 of 5) 26674 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 759-37 chr2 72072490 72072683 + 5 NA Intergenic L1ME1|LINE|L1 75276 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 811-30 chr22 19355931 19356373 + 5 NA intron (NM_003325, intron 20 of 24) intron (NM_003325, intron 20 of 24) -64433 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 922-15 chr18 71633276 71633532 + 5 NA Intergenic Intergenic -54448 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 748-75 chr5 147262147 147262351 + 5 NA intron (NM_001112724, intron 2 of 12) intron (NM_001112724, intron 2 of 12) 27223 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 856-15 chr14 60411247 60411511 + 5 NA Intergenic L1PB1|LINE|L1 74684 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 858-48 chr8 104273249 104273550 + 5 NA Intergenic LOR1-int|LTR|ERV1 50064 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 1672-3 chr4 62306778 62307351 + 5 NA Intergenic L1MA3|LINE|L1 -145299 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1552-2 chr8 135144519 135145204 + 5 NA Intergenic HAL1|LINE|L1 -89270 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1099-23 chr8 108530210 108530707 + 5 NA Intergenic Intergenic 86834 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 724-74 chr5 145217829 145218010 + 5 NA Intergenic Intergenic 617423 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 1178-5 chr15 80622555 80622968 + 5 NA Intergenic L1M4|LINE|L1 41658 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 1198-2 chr10 32565300 32565770 + 5 NA intron (NR_109826, intron 13 of 16) intron (NR_109826, intron 13 of 16) 119395 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 1833 chr12 14524180 14524761 + 5 NA intron (NM_024829, intron 6 of 10) intron (NM_024829, intron 6 of 10) -43262 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 544-36 chr10 106991734 106991948 + 5 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 172865 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 999-6 chr2 77337231 77337607 + 5 NA intron (NR_146416, intron 1 of 1) THE1D|LTR|ERVL-MaLR 184957 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 656-131 chr8 121991397 121991642 + 5 NA Intergenic Intergenic -350079 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 1416-3 chr8 118539816 118540482 + 5 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -80852 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 1144-11 chr8 121891868 121892375 + 5 NA Intergenic Intergenic -250681 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 993-4 chr11 29824079 29824412 + 5 NA Intergenic MER53|DNA|hAT 158148 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 1149-3 chr14 46416676 46417258 + 5 NA intron (NR_102702, intron 3 of 3) L1M4c|LINE|L1 -54392 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1188-7 chr2 205565712 205566275 + 5 NA intron (NM_205863, intron 21 of 21) L2a|LINE|L2 -116507 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 864-22 chr2 133321277 133321620 + 5 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 55253 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 1337-7 chr7 62895117 62895610 + 5 NA Intergenic ALR/Alpha|Satellite|centr 408693 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1554-3 chr14 71259268 71260220 + 5 NA Intergenic LTR16B1|LTR|ERVL -60732 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 660-108 chr8 87739869 87740109 + 5 NA Intergenic Intergenic 134026 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 941-31 chr8 60250542 60250835 + 5 NA intron (NR_135821, intron 3 of 9) L2a|LINE|L2 30712 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 736-37 chr2 21538001 21538180 + 5 NA Intergenic L1M2|LINE|L1 172562 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 899-22 chr4 53094958 53095413 + 5 NA intron (NM_152540, intron 5 of 8) L2a|LINE|L2 232868 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 1258-3 chr19 9380394 9380870 + 5 NA 3' UTR (NM_001202425, exon 9 of 9) 3' UTR (NM_001202425, exon 9 of 9) 4316 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 1284-7 chr3 62578639 62579137 + 5 NA intron (NM_003716, intron 8 of 29) intron (NM_003716, intron 8 of 29) -205338 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 911-5 chr12 14089390 14089600 + 5 NA Intergenic L1M4|LINE|L1 -109139 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 855-31 chr2 190568190 190568476 + 5 NA Intergenic HAL1|LINE|L1 -33611 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 1119-6 chr3 41356196 41356532 + 5 NA intron (NM_001322500, intron 35 of 35) intron (NM_001322500, intron 35 of 35) 156859 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 625-74 chr4 64462097 64462309 + 5 NA Intergenic L1PA11|LINE|L1 -52743 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1481-4 chr21 28221351 28222131 + 5 NA intron (NR_126012, intron 2 of 5) intron (NR_126012, intron 2 of 5) 6926 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 632-32 chr15 91901232 91901435 + 5 NA intron (NR_135775, intron 1 of 10) L1M4a2|LINE|L1 47029 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 1993 chr2 107646041 107646884 + 5 NA Intergenic MIRb|SINE|MIR -107650 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 518-258 chr6 77655783 77656054 + 5 NA intron (NM_001322247, intron 1 of 4) intron (NM_001322247, intron 1 of 4) 2879 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 883-12 chr17 67621559 67621789 + 5 NA intron (NM_181671, intron 5 of 9) L2c|LINE|L2 -96159 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 687-15 chr10 61653909 61654091 + 5 NA Intergenic Intergenic -8929 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 986-33 chr8 82087561 82088047 + 5 NA Intergenic Intergenic -245518 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 878-33 chr4 32765367 32765682 + 5 NA Intergenic Intergenic 414486 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 881-9 chr14 55765097 55765314 + 5 NA Intergenic L1MEg|LINE|L1 -1040 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 737-79 chr7 23744341 23744541 + 5 NA intron (NM_031414, intron 8 of 23) L1M2|LINE|L1 34222 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 690-38 chr14 66318714 66318901 + 5 NA Intergenic L1MA5|LINE|L1 -167564 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 884-3 chr10 72768451 72768754 + 5 NA intron (NR_073062, intron 3 of 9) L1ME1|LINE|L1 47573 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 1550-5 chr8 142367681 142368445 + 5 NA intron (NM_001366903, intron 1 of 9) L1MC4a|LINE|L1 35119 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 820-58 chr7 83859100 83859296 + 5 NA Intergenic Intergenic -210059 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 866-27 chr2 52483052 52483301 + 5 NA Intergenic Intergenic 112528 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 2259 chr10 43534483 43535572 + 5 NA Intergenic Intergenic 33432 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 1035-10 chr3 82472074 82472455 + 5 NA Intergenic MER39|LTR|ERV1 486122 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 901-25 chr4 161371175 161371596 + 5 NA Intergenic L1M4b|LINE|L1 -651348 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 813-11 chr14 78535312 78535555 + 5 NA intron (NM_004796, intron 1 of 16) MIRc|SINE|MIR 131714 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1110-7 chr19 30641021 30641376 + 5 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 268814 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 584-125 chr5 8821130 8821428 + 5 NA Intergenic L1MA3|LINE|L1 -18453 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 627-66 chr21 28788017 28788261 + 5 NA Intergenic Intergenic 97228 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 2164 chr5 140762235 140763250 + 5 NA Intergenic Intergenic -23394 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 844-69 chr8 121046980 121047280 + 5 NA Intergenic AluSz|SINE|Alu -235084 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 1047-13 chr2 136476392 136476837 + 5 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -288931 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 942-20 chr20 42107422 42107778 + 5 NA intron (NM_133170, intron 24 of 31) intron (NM_133170, intron 24 of 31) -489223 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 715-51 chr3 76590988 76591230 + 5 NA Intergenic Tigger2a|DNA|TcMar-Tigger -448990 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 1682-2 chr13 82449065 82449403 + 5 NA Intergenic Intergenic -1222251 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 1119-2 chr10 86059345 86059741 + 5 NA intron (NM_017551, intron 4 of 15) Kanga2_a|DNA|TcMar-Tc2 205245 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 985-4 chr1 227607413 227607809 + 5 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 44055 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 994-3 chr10 75699331 75699754 + 5 NA intron (NR_131178, intron 1 of 7) Charlie7|DNA|hAT-Charlie -12913 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 1181-7 chr14 57893991 57894557 + 5 NA Intergenic Intergenic -28182 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 1854-2 chr8 132333095 132333707 + 5 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 113861 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 869-6 chr1 248259677 248260081 + 5 NA Intergenic L1PREC2|LINE|L1 13935 NM_001004695 391195 Hs.553783 NM_001004695 ENSG00000177212 OR2T33 OR1-56|OR2T32 olfactory receptor family 2 subfamily T member 33 protein-coding 809-53 chr8 88435856 88436164 + 5 NA Intergenic L1M2|LINE|L1 -108527 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 703-73 chr5 80286794 80287002 + 5 NA Intergenic L1MA9|LINE|L1 13580 NR_004845 644936 Hs.627173 NR_004845 LOC644936 - actin beta pseudogene pseudo 638-43 chr15 33811851 33812155 + 5 NA intron (NM_001243996, intron 71 of 102) intron (NM_001243996, intron 71 of 102) -156494 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 738-31 chr18 79936999 79937169 + 5 NA intron (NM_025078, intron 3 of 5) L1MC5|LINE|L1 14569 NM_025078 80148 Hs.288284 NM_025078 ENSG00000122490 SLC66A2 PQLC1 solute carrier family 66 member 2 protein-coding 826-26 chr2 79355239 79355614 + 5 NA Intergenic L1P4|LINE|L1 145418 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 916-18 chr22 24877274 24877695 + 5 NA intron (NM_001098498, intron 13 of 23) intron (NM_001098498, intron 13 of 23) 69211 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 828-42 chr6 40207300 40207621 + 5 NA Intergenic L2c|LINE|L2 148546 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 965-3 chr11 76077178 76077446 + 5 NA intron (NM_003369, intron 13 of 14) intron (NM_003369, intron 13 of 14) 129190 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 954-23 chr2 27868276 27868792 + 5 NA intron (NM_022128, intron 1 of 7) intron (NM_022128, intron 1 of 7) -20175 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 704-16 chr12 9839986 9840143 + 5 NA intron (NM_001366534, intron 3 of 3) L1MB7|LINE|L1 12583 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 577-8 chr1 69089364 69089527 + 5 NA intron (NR_146608, intron 3 of 4) LTR49-int|LTR|ERV1 33547 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 937-7 chr14 24562458 24562733 + 5 NA Intergenic MSTA-int|LTR|ERVL-MaLR 13655 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 646-68 chr2 221359087 221359331 + 5 NA Intergenic Intergenic 213095 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 740-54 chr3 2222349 2222521 + 5 NA intron (NM_175607, intron 2 of 24) L1MB7|LINE|L1 -16394 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 635-80 chr4 62000305 62000461 + 5 NA intron (NM_001371343, intron 20 of 23) intron (NM_001371343, intron 20 of 23) 161382 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1343-6 chr5 59358452 59359038 + 5 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -1775 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 996-12 chr17 66881135 66881508 + 5 NA intron (NM_145811, intron 4 of 5) intron (NM_145811, intron 4 of 5) 46204 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 631-81 chr3 3924067 3924214 + 5 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat -123265 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 873-11 chr15 26794751 26795000 + 5 NA Intergenic L1M5|LINE|L1 -21112 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 1753-3 chr5 5745507 5746016 + 5 NA Intergenic L1MC3|LINE|L1 323084 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 1358-4 chr3 19497566 19497977 + 5 NA intron (NM_144633, intron 11 of 15) L1PREC2|LINE|L1 -182840 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 795-59 chr8 135060280 135060561 + 5 NA Intergenic Intergenic -173711 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1118-16 chr3 109756065 109756470 + 5 NA Intergenic Intergenic 153439 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 1070-6 chr12 25190740 25190956 + 5 NA intron (NM_001352063, intron 1 of 13) intron (NM_001352063, intron 1 of 13) 4312 NM_001319977 55259 Hs.407771 NM_018272 ENSG00000118307 CASC1 LAS1|PPP1R54 cancer susceptibility 1 protein-coding 747-49 chr4 93575912 93576070 + 5 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -252762 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 969-11 chr15 93550446 93550648 + 5 NA Intergenic Intergenic -306013 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 744-67 chr7 68528885 68529071 + 5 NA Intergenic LTR46|LTR|ERV1 508725 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 665-43 chr16 77941005 77941295 + 5 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -81398 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 746-75 chr7 125616705 125617035 + 5 NA Intergenic L1M2|LINE|L1 -352579 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 959-27 chr5 53313240 53313510 + 5 NA Intergenic Intergenic -167254 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 1590 chr11 8468621 8469345 + 5 NA intron (NM_001289059, intron 1 of 10) Tigger1|DNA|TcMar-Tigger 124993 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 490-131 chr19 57968478 57968675 + 5 NA intron (NM_152474, intron 3 of 5) L2|LINE|L2 5958 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 985-17 chr5 104463066 104463618 + 5 NA Intergenic L1MA2|LINE|L1 -636132 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 887-18 chr2 215618371 215618689 + 5 NA intron (NR_037195, intron 8 of 9) intron (NR_037195, intron 8 of 9) -99513 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 896-3 chr10 82254407 82254702 + 5 NA intron (NM_001370082, intron 3 of 10) L1MC3|LINE|L1 -21634 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 986-31 chr6 40142288 40142711 + 5 NA Intergenic Intergenic -208037 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1430-4 chr8 95947207 95947860 + 5 NA non-coding (NR_036611, exon 1 of 1) non-coding (NR_036611, exon 1 of 1) 815 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 569-47 chr12 58615746 58615918 + 5 NA intron (NR_120452, intron 2 of 7) L2a|LINE|L2 24130 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 909-20 chr4 86520171 86520699 + 5 NA Intergenic L1PB1|LINE|L1 22117 NR_039657 100616463 NR_039657 ENSG00000266515 MIR4452 - microRNA 4452 ncRNA 1361-4 chr2 54929650 54930330 + 5 NA intron (NM_001039753, intron 27 of 40) intron (NM_001039753, intron 27 of 40) 80282 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 807-32 chr2 195441726 195441999 + 5 NA Intergenic L1M2|LINE|L1 -215096 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 564-189 chr7 62821435 62821564 + 5 NA Intergenic ALR/Alpha|Satellite|centr 482557 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 840-8 chr10 116246433 116246654 + 5 NA intron (NM_005264, intron 4 of 10) L1MC2|LINE|L1 9252 NM_001348099 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 730-39 chr20 40479652 40479910 + 5 NA Intergenic Intergenic 209455 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 1215-3 chr17 70837108 70837622 + 5 NA Intergenic Intergenic 364814 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 621-44 chr16 74796773 74796933 + 5 NA Intergenic L1MEc|LINE|L1 -22033 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 1578 chr14 59646276 59647083 + 5 NA TTS (NR_049851) TTS (NR_049851) 341 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 857-53 chr9 1307842 1308152 + 5 NA Intergenic Intergenic 256510 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 1843-2 chr8 139545135 139545862 + 5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 157625 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 442-106 chr17 72303951 72304136 + 5 NA Intergenic Intergenic -38768 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 1223-11 chr4 38299106 38299763 + 5 NA Intergenic L1M1|LINE|L1 -67480 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 1381 chr2 43096071 43096670 + 5 NA Intergenic L1ME3Cz|LINE|L1 6075 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 830-19 chr17 69870935 69871111 + 5 NA intron (NR_109972, intron 4 of 4) MER121|DNA|hAT? -90684 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 781-46 chr3 187924324 187924627 + 5 NA Intergenic L2a|LINE|L2 51932 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 491-245 chr7 41794244 41794512 + 5 NA Intergenic Intergenic -91288 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 1088-12 chr8 82223729 82224159 + 5 NA Intergenic Intergenic -381658 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 458-144 chr2 161526076 161526223 + 5 NA Intergenic L1MDa|LINE|L1 -18247 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 1101-4 chr14 22327985 22328459 + 5 NA Intergenic LTR67B|LTR|ERVL 104531 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 613-111 chr5 149464714 149464930 + 5 NA Intergenic Intergenic 34176 NR_029686 406937 NR_029686 ENSG00000276365 MIR145 MIRN145|miR-145|miRNA145 microRNA 145 ncRNA 1087-17 chr6 60694016 60694415 + 5 NA Intergenic L1ME4a|LINE|L1 -879915 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 1355-4 chr2 35884490 35884923 + 5 NA Intergenic L2b|LINE|L2 413301 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 840-6 chr10 43634228 43634446 + 5 NA intron (NR_038867, intron 1 of 4) L1PA13|LINE|L1 5520 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 1096-12 chr4 43052904 43053314 + 5 NA Intergenic MSTD-int|LTR|ERVL-MaLR 159843 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 1196-12 chr6 52194392 52194685 + 5 NA Intergenic Intergenic 8163 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 512-99 chr17 21988554 21988794 + 5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -214321 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 1631-3 chr6 22839262 22839927 + 5 NA Intergenic L1M2a1|LINE|L1 -121670 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 883-39 chr8 46296955 46297322 + 5 NA Intergenic ALR/Alpha|Satellite|centr 320505 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 670-10 chr10 3358907 3359215 + 5 NA intron (NR_131187, intron 1 of 1) (TTAT)n|Simple_repeat|Simple_repeat 40366 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 2368 chr14 68532388 68533131 + 5 NA intron (NM_001321818, intron 10 of 10) L1MEi|LINE|L1 96028 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1025-4 chr11 50610345 50610681 + 5 NA Intergenic ALR/Alpha|Satellite|centr 201366 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 922-19 chr2 128043457 128043907 + 5 NA Intergenic LTR48|LTR|ERV1 -15623 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 868-31 chr5 25611477 25611676 + 5 NA Intergenic L1M4|LINE|L1 420623 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 560-101 chr20 42804998 42805214 + 5 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) 119623 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 760-76 chr8 131083319 131083602 + 5 NA Intergenic Intergenic -42551 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 612-133 chr7 87576522 87576717 + 5 NA intron (NM_001348944, intron 6 of 29) intron (NM_001348944, intron 6 of 29) 24265 NM_001348946 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 635-49 chr19 36855714 36855933 + 5 NA intron (NM_001242474, intron 3 of 3) intron (NM_001242474, intron 3 of 3) 4172 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 1219-9 chr8 77359556 77359927 + 5 NA Intergenic Intergenic -90956 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 988-23 chr3 99495004 99495389 + 5 NA Intergenic L1MA8|LINE|L1 -143398 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 553-202 chr6 2341155 2341349 + 5 NA intron (NR_046229, intron 4 of 6) L1MA5A|LINE|L1 95499 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 924-9 chr10 73766637 73766988 + 5 NA exon (NM_004922, exon 14 of 24) exon (NM_004922, exon 14 of 24) -5464 NM_173540 170384 Hs.588854 NM_173540 ENSG00000196968 FUT11 FUCTXI fucosyltransferase 11 protein-coding 808-26 chr2 50098947 50099275 + 5 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -124908 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 972-7 chr16 35761048 35761394 + 5 NA Intergenic ALR/Alpha|Satellite|centr 14669 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 1103-13 chr8 20633980 20634528 + 5 NA Intergenic Intergenic -19328 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 739-49 chr3 97453543 97453785 + 5 NA intron (NM_001080448, intron 7 of 17) intron (NM_001080448, intron 7 of 17) 14057 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 873-13 chr19 7318526 7318731 + 5 NA Intergenic L1MB3|LINE|L1 -24214 NM_001079817 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 1648 chr1 199536232 199536895 + 5 NA Intergenic Intergenic 387965 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 1284-3 chr15 69709411 69709875 + 5 NA Intergenic Intergenic 117443 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 924-10 chr10 120121333 120121641 + 5 NA Intergenic MLT1F2|LTR|ERVL-MaLR 162974 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 660-95 chr6 148726892 148727070 + 5 NA Intergenic L1ME1|LINE|L1 -20049 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 1417-6 chr3 95638417 95638961 + 5 NA Intergenic Intergenic 44504 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 1074-12 chr4 154150809 154151090 + 5 NA Intergenic Intergenic 340850 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 898-31 chr5 101843847 101844177 + 5 NA Intergenic L1ME1|LINE|L1 452272 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 1279-8 chr8 126045195 126045690 + 5 NA Intergenic L1PA15-16|LINE|L1 -94245 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1574 chr5 53391897 53392385 + 5 NA Intergenic L1MCa|LINE|L1 -88488 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 1091-3 chr14 84192044 84192565 + 5 NA Intergenic L1ME3F|LINE|L1 -1079628 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 601-145 chr8 112271678 112271823 + 5 NA intron (NM_001363185, intron 55 of 66) MIRb|SINE|MIR -371743 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 832-43 chr8 43840386 43840590 + 5 NA Intergenic ALR/Alpha|Satellite|centr 548046 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 1163-13 chr5 179091360 179091815 + 5 NA Intergenic Charlie10|DNA|hAT-Charlie 31214 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 930-15 chr19 43968153 43968473 + 5 NA TTS (NM_001297588) TTS (NM_001297588) -15857 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 1533 chr1 118355011 118355605 + 5 NA Intergenic L1ME3|LINE|L1 -170080 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 1049-19 chr7 68609213 68609679 + 5 NA Intergenic Intergenic 589193 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 1432 chr12 55554330 55554699 + 5 NA Intergenic Intergenic 3287 NM_001005494 341418 Hs.495021 NM_001005494 ENSG00000179626 OR6C4 OR12-10 olfactory receptor family 6 subfamily C member 4 protein-coding 860-32 chr3 1637919 1638245 + 5 NA Intergenic Intergenic -460721 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 1873 chr8 131455288 131456254 + 5 NA Intergenic L1ME1|LINE|L1 -414862 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 473-50 chr11 110814007 110814139 + 5 NA Intergenic L1MB2|LINE|L1 -100884 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 1254-9 chr8 110797458 110797917 + 5 NA Intergenic Intergenic 229746 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 1044-2 chr11 40314409 40314687 + 5 NA intron (NM_001258419, intron 4 of 6) L1MA5A|LINE|L1 -21418 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1235-2 chr13 102416847 102417318 + 5 NA Intergenic L1MEg|LINE|L1 -14639 NM_001321947 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 1014 chr1 118459430 118459913 + 5 NA Intergenic L1PA15-16|LINE|L1 -274443 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 1404-4 chr17_GL000205v2_random 14017 14517 + 5 NA Intergenic CER|Satellite|Satellite 43699 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 686-27 chr16 77726239 77726522 + 5 NA intron (NM_001243661, intron 2 of 2) intron (NM_001243661, intron 2 of 2) 3866 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 1497-3 chr5 158506087 158506829 + 5 NA Intergenic L1MEg|LINE|L1 -96685 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 754-26 chr16 48087149 48087441 + 5 NA intron (NM_033226, intron 25 of 28) MamRep137|DNA|TcMar-Tigger 59475 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 384-259 chr4 47366613 47366775 + 5 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 97008 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 802-33 chr2 116256214 116256500 + 5 NA Intergenic LTR82A|LTR|ERVL 912542 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 815-41 chr8 82280443 82280763 + 5 NA Intergenic Intergenic -438317 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 1273-7 chr4 103652844 103653330 + 5 NA intron (NM_001059, intron 3 of 4) intron (NM_001059, intron 3 of 4) 66898 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 847-4 chr1 239187645 239187882 + 5 NA Intergenic LTR37A|LTR|ERV1 -198805 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 1389-2 chr2 60185099 60185552 + 5 NA Intergenic L1MC3|LINE|L1 197711 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 1018-17 chr2 118504798 118505164 + 5 NA Intergenic (TGA)n|Simple_repeat|Simple_repeat 97985 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 2061 chr10 90492968 90493906 + 5 NA intron (NR_110657, intron 2 of 6) L1M3de|LINE|L1 47368 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 993-13 chr2 35690961 35691402 + 5 NA Intergenic L1MC5|LINE|L1 219776 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 680-118 chr8 131412585 131412763 + 5 NA Intergenic Intergenic -371765 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 792-46 chr5 25580086 25580370 + 5 NA Intergenic MLT2D|LTR|ERVL 389275 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 1014-14 chr2 160753424 160753770 + 5 NA Intergenic MER58A|DNA|hAT-Charlie -259790 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 1110-16 chr7 1307926 1308291 + 5 NA Intergenic L1ME4c|LINE|L1 75236 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 960-28 chr3 193164130 193164587 + 5 NA Intergenic L1PA16|LINE|L1 -76864 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 1162-8 chr6 50475430 50475984 + 5 NA Intergenic L1MD1|LINE|L1 -237837 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 770-56 chr4 95443641 95443933 + 5 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 105186 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 735-64 chr4 71904383 71904634 + 5 NA Intergenic Intergenic -98988 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 930-2 chr1 65558101 65558382 + 5 NA intron (NM_001198687, intron 1 of 18) intron (NM_001198687, intron 1 of 18) 32552 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 478-185 chr3 51980223 51980492 + 5 NA intron (NM_001316331, intron 3 of 16) intron (NM_001316331, intron 3 of 16) -3178 NM_001198895 95 Hs.334707 NM_000666 ENSG00000243989 ACY1 ACY-1|ACY1D|HEL-S-5 aminoacylase 1 protein-coding 671-65 chr3 126303448 126303715 + 5 NA Intergenic L1MEc|LINE|L1 53827 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 1096-16 chr5 164921107 164921471 + 5 NA Intergenic L1M5|LINE|L1 451010 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 1687-2 chr7 22033173 22033816 + 5 NA Intergenic Tigger13a|DNA|TcMar-Tigger -87595 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 1652 chr1 112273062 112273711 + 5 NA Intergenic Intergenic -122828 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 637-117 chr8 115169379 115169583 + 5 NA Intergenic L1MB3|LINE|L1 498532 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 781-54 chr5 137424938 137425205 + 5 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 74255 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 957-24 chr5 5282611 5282971 + 5 NA intron (NM_139056, intron 18 of 22) L1MC|LINE|L1 -139886 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 694-94 chr4 35236785 35237033 + 5 NA Intergenic Intergenic -967162 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 599-37 chr14 81557577 81557772 + 5 NA Intergenic Zaphod|DNA|hAT-Tip100 -23813 NM_001244984 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 2639 chr19 37668276 37669323 + 5 NA 3' UTR (NM_152605, exon 4 of 4) 3' UTR (NM_152605, exon 4 of 4) -12538 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 2900 chr7 5065639 5066811 + 5 NA 3' UTR (NM_021163, exon 5 of 5) 3' UTR (NM_021163, exon 5 of 5) -5835 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 921-3 chr10 76056971 76057200 + 5 NA intron (NM_001305581, intron 4 of 6) intron (NM_001305581, intron 4 of 6) 274324 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 1069-8 chr22 34734290 34734796 + 5 NA Intergenic ERVL-int|LTR|ERVL 263373 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 833-42 chr9 4220087 4220391 + 5 NA intron (NM_001042413, intron 2 of 10) L1MC4|LINE|L1 -68056 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 1026-26 chr8 46785135 46785551 + 5 NA Intergenic Intergenic -55543 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 739-72 chr8 131061008 131061297 + 5 NA Intergenic L2b|LINE|L2 -20243 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 1299-3 chr2 132466495 132467011 + 5 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 33042 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 904-27 chr20 34236783 34237113 + 5 NA Intergenic L1M4c|LINE|L1 -23417 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 846-27 chr2 236553401 236553727 + 5 NA Intergenic Intergenic -16261 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 882-18 chr18 13991549 13991921 + 5 NA Intergenic L1MA8|LINE|L1 -76028 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 2343 chr2 79181810 79182758 + 5 NA Intergenic Intergenic -22531 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 775-76 chr6 102191166 102191466 + 5 NA Intergenic L1M4c|LINE|L1 792331 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 809-42 chr5 50263911 50264244 + 5 NA Intergenic Intergenic 177211 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1821-4 chr8 87072652 87073421 + 5 NA intron (NM_173538, intron 4 of 10) L1PA10|LINE|L1 206621 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 2105 chr14 60409770 60410710 + 5 NA Intergenic L1PA15-16|LINE|L1 75823 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 872-38 chr5 135087215 135087602 + 5 NA intron (NR_161235, intron 2 of 5) intron (NR_161235, intron 2 of 5) -47361 NR_105049 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 Epist C5orf66 antisense RNA 1 ncRNA 842-9 chr11 24416510 24416776 + 5 NA Intergenic THE1D|LTR|ERVL-MaLR -80410 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 841-26 chr3 133695787 133695994 + 5 NA intron (NM_001354703, intron 2 of 22) MER44B|DNA|TcMar-Tigger 33892 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 1181-14 chr5 39787100 39787619 + 5 NA Intergenic Intergenic -264932 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 735-71 chr5 94270680 94270912 + 5 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -159097 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 821-31 chr20 42333078 42333394 + 5 NA intron (NM_133170, intron 11 of 31) Charlie1|DNA|hAT-Charlie -352247 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 1462 chr3 20612227 20612899 + 5 NA Intergenic L1M4c|LINE|L1 270095 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 1503-3 chr8 122412518 122413113 + 5 NA Intergenic L2a|LINE|L2 155829 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 855-6 chr10 81783484 81783674 + 5 NA Intergenic MER21B|LTR|ERVL -91615 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 728-91 chr7 40013217 40013516 + 5 NA intron (NM_003718, intron 5 of 13) L1MB3|LINE|L1 63006 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 1010-2 chr11 59989513 59989947 + 5 NA intron (NR_130719, intron 8 of 8) L1MA2|LINE|L1 -34073 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 1524-5 chr8 144931764 144932389 + 5 NA exon (NM_001029976, exon 4 of 4) exon (NM_001029976, exon 4 of 4) 18804 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 957-29 chr7 40709399 40709777 + 5 NA intron (NM_024728, intron 13 of 14) LTR16A1|LTR|ERVL 270351 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 1422-4 chr8 138252257 138252760 + 5 NA intron (NM_015912, intron 5 of 19) L3|LINE|CR1 -168963 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 1780-2 chr19 44473899 44474737 + 5 NA TTS (NM_001288762) TTS (NM_001288762) -25740 NM_001278510 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 1320-6 chr14 44882424 44883031 + 5 NA Intergenic L1MA3|LINE|L1 -14548 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 1356 chr2 190016759 190017630 + 5 NA Intergenic L1MA7|LINE|L1 45535 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 652-59 chr19 11731244 11731431 + 5 NA intron (NM_001080493, intron 1 of 3) intron (NM_001080493, intron 1 of 3) 7609 NM_001297610 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 1222-8 chr6 96889142 96889601 + 5 NA TTS (NM_014165) TTS (NM_014165) 8520 NM_014165 29078 Hs.512144 NM_014165 ENSG00000123545 NDUFAF4 C6orf66|HRPAP20|HSPC125|MC1DN15|My013|bA22L21.1 NADH:ubiquinone oxidoreductase complex assembly factor 4 protein-coding 1558 chr19 37810340 37811017 + 5 NA Intergenic Tigger3b|DNA|TcMar-Tigger -6733 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 1009-20 chr8 79546354 79546641 + 5 NA Intergenic Intergenic -64620 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 1066-16 chr3 179496000 179496307 + 5 NA Intergenic L1M1|LINE|L1 -44683 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 797-16 chr14 56968711 56968940 + 5 NA Intergenic Intergenic 155667 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 641-72 chr21 45186735 45186943 + 5 NA intron (NR_027674, intron 8 of 11) L1ME3Cz|LINE|L1 34309 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 1625 chr6 169473980 169474567 + 5 NA intron (NR_146875, intron 19 of 20) L1ME1|LINE|L1 -220159 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 1118-15 chr3 54683346 54683894 + 5 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -43763 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 814-48 chr5 12536874 12537041 + 5 NA Intergenic MER75|DNA|PiggyBac -37900 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 548-207 chr7 23374681 23374915 + 5 NA intron (NM_006547, intron 3 of 14) MER11B|LTR|ERVK -21648 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 860-44 chr7 77820630 77820922 + 5 NA intron (NM_001366088, intron 1 of 11) L1MA5A|LINE|L1 -19352 NM_020432 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 1117-2 chr10 77015294 77015598 + 5 NA intron (NM_001271519, intron 17 of 28) LTR33|LTR|ERVL -125385 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 612-13 chr10 44502795 44503022 + 5 NA Intergenic L1MD2|LINE|L1 -117811 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 846-32 chr3 174047481 174047741 + 5 NA intron (NM_001365928, intron 4 of 6) (ACACAT)n|Simple_repeat|Simple_repeat -126815 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 998-13 chr2 185511355 185511828 + 5 NA Intergenic L1M2|LINE|L1 227128 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 1444-2 chr16 31916537 31917200 + 5 NA non-coding (NR_049749, exon 5 of 5) non-coding (NR_049749, exon 5 of 5) 43061 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 1212-5 chr2 41809279 41809663 + 5 NA Intergenic LTR16A1|LTR|ERVL -68084 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 697-22 chr14 60191521 60191714 + 5 NA Intergenic Intergenic -21753 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 1225-2 chr14 72758889 72759486 + 5 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 133462 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 451-45 chr12 26050632 26050829 + 5 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) -1834 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 1204-2 chr14 78648129 78648605 + 5 NA intron (NR_073547, intron 5 of 20) intron (NR_073547, intron 5 of 20) 244648 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1751 chr7 98096961 98097606 + 5 NA Intergenic L1MB7|LINE|L1 -9579 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 1220-10 chr8 27006610 27007198 + 5 NA Intergenic Intergenic 42059 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 705-55 chr2 133797711 133797881 + 5 NA Intergenic L1MA9|LINE|L1 -229333 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 667-85 chr5 33170455 33170742 + 5 NA Intergenic L1ME2z|LINE|L1 -59137 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 1183-7 chr21 29967820 29968367 + 5 NA Intergenic Intergenic -28041 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 739-22 chr15 45197857 45198048 + 5 NA intron (NM_138356, intron 2 of 7) intron (NM_138356, intron 2 of 7) 3164 NM_138356 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 718-53 chr3 95079409 95079623 + 5 NA Intergenic Intergenic 141253 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 982-29 chr8 53670538 53670813 + 5 NA Intergenic Intergenic -146710 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 1153 chr10 62122133 62122730 + 5 NA Intergenic L1MA5|LINE|L1 73074 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 693-74 chr4 139797478 139797652 + 5 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 131746 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 703-65 chr4 55532508 55532717 + 5 NA intron (NM_004898, intron 1 of 22) AluJr4|SINE|Alu 13320 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 762-23 chr14 45487243 45487498 + 5 NA Intergenic MLT1C|LTR|ERVL-MaLR 228232 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 789-51 chr8 130826011 130826268 + 5 NA intron (NM_001115, intron 12 of 17) MIRc|SINE|MIR 214770 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 2220 chr12 133105827 133106458 + 5 NA exon (NM_001300776, exon 4 of 4) exon (NM_001300776, exon 4 of 4) 24331 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 732-50 chr2 228596735 228597001 + 5 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 14527 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 1119-11 chr8 105798003 105798593 + 5 NA intron (NM_001362837, intron 6 of 7) AluSx|SINE|Alu 262205 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 988-43 chr9 12439705 12440068 + 5 NA Intergenic Intergenic -253499 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 633-19 chr11 24379862 24380042 + 5 NA Intergenic Intergenic -117101 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 718-93 chr8 86798529 86798787 + 5 NA Intergenic Intergenic -54983 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 612-29 chr11 97795422 97795577 + 5 NA Intergenic Intergenic -1225450 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 728-68 chr4 189063021 189063286 + 5 NA Intergenic L1M3f|LINE|L1 286496 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 1101-9 chr22 49248478 49248963 + 5 NA Intergenic L1MEc|LINE|L1 294746 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 1837 chr18 107918 108867 + 5 NA promoter-TSS (NR_033770) promoter-TSS (NR_033770) -673 NR_033770 727758 Hs.585843 NR_033770 ENSG00000263006 ROCK1P1 ROCK1P Rho associated coiled-coil containing protein kinase 1 pseudogene 1 pseudo 970-5 chr13 30889321 30889741 + 5 NA intron (NR_038287, intron 2 of 3) MER57D|LTR|ERV1 6969 NR_103813 440132 Hs.729493 NR_103813 ENSG00000236094 LINC00545 - long intergenic non-protein coding RNA 545 ncRNA 772-11 chr11 99824982 99825200 + 5 NA intron (NM_001243270, intron 3 of 23) intron (NM_001243270, intron 3 of 23) 268946 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 659-7 chr10 11289367 11289592 + 5 NA intron (NM_001025076, intron 9 of 13) intron (NM_001025076, intron 9 of 13) 55195 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 1656-2 chr6 61019455 61020073 + 5 NA Intergenic SATR1|Satellite|Satellite -554366 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 939-31 chr8 104267199 104267577 + 5 NA Intergenic Intergenic 44053 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 880-39 chr6 70410254 70410618 + 5 NA Intergenic Intergenic -2968 NM_001351600 57579 Hs.211700 NM_020819 ENSG00000082269 FAM135A KIAA1411 family with sequence similarity 135 member A protein-coding 572-177 chr8 126058761 126058975 + 5 NA Intergenic Intergenic -107671 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 877-6 chr13 104471285 104471538 + 5 NA Intergenic Intergenic -994456 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 761-6 chr1 247813270 247813650 + 5 NA Intergenic Intergenic 2269 NM_001001966 284532 Hs.626620 NM_001001966 ENSG00000196772 OR14A16 OR5AT1 olfactory receptor family 14 subfamily A member 16 protein-coding 541-20 chr10 76239703 76239889 + 5 NA intron (NM_001305581, intron 5 of 6) L1MC5a|LINE|L1 457035 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 1008-13 chr3 128219812 128220187 + 5 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) -66085 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 884-40 chr5 156603572 156604005 + 5 NA intron (NM_001128209, intron 5 of 7) L1MA6|LINE|L1 -246507 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 1481-6 chr7 64525509 64526054 + 5 NA 3' UTR (NM_001130022, exon 4 of 4) 3' UTR (NM_001130022, exon 4 of 4) 37290 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 702-20 chr13 54875467 54875668 + 5 NA Intergenic Intergenic -298887 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 667-81 chr4 113041506 113041831 + 5 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -7746 NM_020977 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 857-25 chr19 36881964 36882379 + 5 NA intron (NR_038362, intron 2 of 2) L1M5|LINE|L1 30520 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 796-48 chr7 4295884 4296129 + 5 NA Intergenic L1PA7|LINE|L1 -161169 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 671-42 chr2 75243891 75244117 + 5 NA Intergenic L1MEf|LINE|L1 -44484 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 557-112 chr2 146615631 146615863 + 5 NA Intergenic ERVL-E-int|LTR|ERVL 28690 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 1010-11 chr8 43642929 43643306 + 5 NA Intergenic ALR/Alpha|Satellite|centr 350675 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 593-29 chr12 11865461 11865706 + 5 NA intron (NM_001987, intron 4 of 7) (TA)n|Simple_repeat|Simple_repeat -184278 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 639-43 chr15 66683633 66683939 + 5 NA intron (NR_110372, intron 3 of 4) intron (NR_110372, intron 3 of 4) -18450 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 557-207 chr8 124123829 124124016 + 5 NA intron (NR_103547, intron 1 of 4) MIR3|SINE|MIR 47600 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 984-21 chr8 132591395 132591749 + 5 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -30093 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 1326-6 chr5 179090153 179090671 + 5 NA Intergenic L1M5|LINE|L1 30039 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 935-33 chr5 41610288 41610608 + 5 NA Intergenic Intergenic -99847 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 724-56 chr3 121103708 121103924 + 5 NA intron (NR_145517, intron 5 of 8) intron (NR_145517, intron 5 of 8) 54176 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 777-24 chr14 82427073 82427317 + 5 NA Intergenic Intergenic -215437 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 905-16 chr19 22353593 22353843 + 5 NA Intergenic Intergenic 67277 NM_001242680 100287226 Hs.531629 NM_001242680 ENSG00000196350 ZNF729 - zinc finger protein 729 protein-coding 796-19 chr15 26803547 26803729 + 5 NA Intergenic L1MEc|LINE|L1 -29875 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 611-139 chr7 85929639 85929850 + 5 NA Intergenic HAL1|LINE|L1 508622 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 947-8 chr15 97359100 97359420 + 5 NA Intergenic Intergenic 162551 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 972-16 chr3 109387768 109388012 + 5 NA Intergenic Intergenic -22100 NR_109842 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 2166 chr20 31054695 31055807 + 5 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -202413 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 1190-5 chr3 193952628 193953022 + 5 NA Intergenic L1MA5|LINE|L1 41413 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 914-11 chr17 14516536 14516833 + 5 NA Intergenic MLT1J2|LTR|ERVL-MaLR 212944 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 496-17 chr1 147110142 147110305 + 5 NA intron (NR_103466, intron 3 of 5) intron (NR_103466, intron 3 of 5) 4123 NR_103466 644861 Hs.451804 NR_103466 NBPF13P - NBPF member 13, pseudogene pseudo 890-6 chr11 55094522 55094860 + 5 NA Intergenic ALR/Alpha|Satellite|centr -167464 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 1762 chr2 120650409 120651357 + 5 NA Intergenic LTR52|LTR|ERVL -84985 NM_001371271 962-7 chr14 86705063 86705491 + 5 NA Intergenic THE1B|LTR|ERVL-MaLR -200501 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 925-16 chr2 39700988 39701331 + 5 NA intron (NM_152390, intron 1 of 3) L1M4|LINE|L1 35242 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 1186-20 chrX 58330112 58330637 + 5 NA Intergenic ALR/Alpha|Satellite|centr -419741 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 711-20 chr14 69832451 69832666 + 5 NA Intergenic L1MC5|LINE|L1 20798 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 1109-7 chr5 46026457 46027064 + 5 NA Intergenic ALR/Alpha|Satellite|centr -330380 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1262-2 chr11 82259224 82259804 + 5 NA intron (NR_120571, intron 3 of 7) L1MEb|LINE|L1 144399 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 928-20 chr4 5517712 5518151 + 5 NA Intergenic MER31-int|LTR|ERV1 -6638 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 1357-3 chr2 185511960 185512602 + 5 NA Intergenic L1M5|LINE|L1 226438 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 866-28 chr21 27504022 27504283 + 5 NA Intergenic Intergenic -218227 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1298-3 chr5 151842341 151842916 + 5 NA intron (NM_000171, intron 7 of 8) L1MB7|LINE|L1 -70452 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 528-71 chr12 116886915 116887078 + 5 NA Intergenic Intergenic -5555 NR_073189 8739 Hs.26605 NM_003806 ENSG00000135116 HRK DP5|HARAKIRI harakiri, BCL2 interacting protein protein-coding 727-6 chr1 248702503 248702793 + 5 NA Intergenic L2|LINE|L2 5586 NR_125950 101928226 NR_125950 LYPD9P - LY6/PLAUR domain containing 9, pseudogene pseudo 1315-3 chr4 45050728 45051124 + 5 NA Intergenic Intergenic -324292 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 899-34 chr8 122963789 122964105 + 5 NA intron (NM_001362797, intron 4 of 4) L1PB1|LINE|L1 61825 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 994-11 chr5 41357234 41357614 + 5 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -95955 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 811-37 chr5 15185791 15186079 + 5 NA Intergenic L1MEc|LINE|L1 80625 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 838-26 chr4 73878401 73878606 + 5 NA Intergenic Intergenic 9110 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 693-10 chr1 227275387 227275564 + 5 NA intron (NM_001366019, intron 1 of 36) L1MEd|LINE|L1 43017 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 1197-12 chr9 90875293 90875666 + 5 NA intron (NM_001174167, intron 9 of 13) intron (NM_001174167, intron 9 of 13) 48059 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 904-14 chr15 91275914 91276345 + 5 NA intron (NM_001323036, intron 8 of 11) L1MEf|LINE|L1 174333 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 1202-8 chr7 77549782 77550317 + 5 NA intron (NM_001131009, intron 1 of 16) intron (NM_001131009, intron 1 of 16) 12006 NM_001131008 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 1305 chr10 23572521 23572991 + 5 NA Intergenic MIRb|SINE|MIR -121971 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 798-19 chr15 54864341 54864542 + 5 NA Intergenic L1MC4|LINE|L1 -192306 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 1167-17 chr8 135329620 135330108 + 5 NA Intergenic MLT1H1|LTR|ERVL-MaLR 95733 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 798-28 chr2 78735068 78735479 + 5 NA Intergenic MIRc|SINE|MIR 189742 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 910-33 chr5 92279504 92279736 + 5 NA Intergenic L1PB2|LINE|L1 -896303 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 1052-7 chr14 76893275 76893647 + 5 NA Intergenic HAL1|LINE|L1 -66177 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 792-61 chr8 128374260 128374520 + 5 NA Intergenic Intergenic 190289 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 783-8 chr1 247035896 247036199 + 5 NA 3' UTR (NM_001204220, exon 4 of 4) 3' UTR (NM_001204220, exon 4 of 4) -27990 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 892-8 chr10 111878194 111878495 + 5 NA Intergenic L2c|LINE|L2 305421 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 1000-20 chr5 65341349 65341831 + 5 NA intron (NR_135689, intron 7 of 25) L1ME4c|LINE|L1 140330 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 785-20 chr16 77146042 77146278 + 5 NA Intergenic L1MEg|LINE|L1 -45030 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 1505-4 chr7 19890391 19891131 + 5 NA Intergenic Intergenic -117144 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 521-273 chrX 79465440 79465620 + 5 NA Intergenic L1PB3|LINE|L1 -97978 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 445-126 chr2 103039656 103039766 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -55282 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 1398-5 chr2 103118350 103118906 + 5 NA Intergenic L1MA3|LINE|L1 -134199 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 894-33 chr5 37605170 37605513 + 5 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 226023 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 920-26 chr8 36212777 36213001 + 5 NA Intergenic Intergenic -502569 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 670-71 chr20 53240681 53241035 + 5 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 55575 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 516-154 chr20 60277626 60277812 + 5 NA intron (NR_046099, intron 3 of 4) Kanga2_a|DNA|TcMar-Tc2 -30755 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 1030-4 chr1 166513758 166514192 + 5 NA Intergenic L1MEf|LINE|L1 -23936 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 961-8 chr2 76811053 76811428 + 5 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -174725 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 961-18 chr6 125459202 125459477 + 5 NA Intergenic THE1A-int|LTR|ERVL-MaLR -157372 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 667-120 chr8 134604310 134604446 + 5 NA intron (NM_020863, intron 5 of 15) intron (NM_020863, intron 5 of 15) 6307 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 874 chr1 76118569 76118839 + 5 NA intron (NM_001349108, intron 1 of 3) Tigger12c|DNA|TcMar-Tigger 43958 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 1063-14 chr18 22663240 22663573 + 5 NA Intergenic L1PA17|LINE|L1 123431 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 1874 chr2 185509741 185510593 + 5 NA Intergenic L1MA6|LINE|L1 228552 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 525-248 chr7 108303315 108303494 + 5 NA intron (NM_001371126, intron 3 of 32) L2|LINE|L2 25122 NM_001371180 676-24 chr12 16410662 16410828 + 5 NA Intergenic Intergenic 57328 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 1649 chr1 65985964 65986784 + 5 NA intron (NM_002600, intron 3 of 16) L2c|LINE|L2 -6242 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 575-60 chr15 65642533 65642722 + 5 NA promoter-TSS (NM_001254740) promoter-TSS (NM_001254740) -252 NM_001254740 9187 Hs.173092 NM_004727 ENSG00000074621 SLC24A1 CSNB1D|HsT17412|NCKX|NCKX1|RODX solute carrier family 24 member 1 protein-coding 857-23 chr18 54661521 54661745 + 5 NA Intergenic Intergenic 70474 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 1053-18 chr6 63333643 63334107 + 5 NA Intergenic L1MA4A|LINE|L1 -13892 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 929-11 chr15 90114558 90115039 + 5 NA intron (NR_149130, intron 2 of 2) LTR8B|LTR|ERV1 -12244 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 365-231 chr20 31187134 31187285 + 5 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -70455 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 679-27 chr12 92029466 92029661 + 5 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 112150 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 1346-6 chr9 112992739 112993297 + 5 NA Intergenic L1PA10|LINE|L1 19174 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 1131-4 chr15 100459577 100460143 + 5 NA intron (NM_001290341, intron 12 of 13) L1ME4b|LINE|L1 84426 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 1031-9 chr19 44478481 44478833 + 5 NA intron (NM_001288761, intron 3 of 3) intron (NM_001288761, intron 3 of 3) 21865 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 749-39 chr16 49271324 49271497 + 5 NA Intergenic Intergenic 10428 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 846-59 chr8 134216788 134217143 + 5 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 330469 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1556-2 chr4 35332167 35332738 + 5 NA Intergenic Intergenic 911487 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 1548-2 chr5 153192859 153193418 + 5 NA Intergenic L1ME4b|LINE|L1 -220789 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 1431 chr16 72435232 72435854 + 5 NA intron (NR_159371, intron 3 of 5) L3|LINE|CR1 229427 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 685-35 chr18 6384071 6384343 + 5 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) -9782 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 678-53 chr2 98264839 98265089 + 5 NA intron (NM_001345864, intron 15 of 21) L1M3|LINE|L1 -81191 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 1608-4 chr5 180264640 180265382 + 5 NA intron (NM_001364608, intron 4 of 12) intron (NM_001364608, intron 4 of 12) 15597 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 517-102 chr17 61282724 61282907 + 5 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 84889 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 1124-8 chr5 111483128 111483374 + 5 NA intron (NM_001744, intron 10 of 10) intron (NM_001744, intron 10 of 10) -28975 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 924-5 chr1 182519170 182519381 + 5 NA intron (NM_001366934, intron 10 of 22) L1MEg|LINE|L1 69129 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 1592-2 chr20 2403847 2404663 + 5 NA intron (NM_198994, intron 9 of 12) intron (NM_198994, intron 9 of 12) 23354 NM_198994 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 754-51 chr3 26961015 26961254 + 5 NA Intergenic MER66-int|LTR|ERV1 255389 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 1027 chr10 80828922 80829461 + 5 NA Intergenic L1M1|LINE|L1 179394 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 1079-2 chr15 56559765 56560229 + 5 NA Intergenic HSMAR1|DNA|TcMar-Mariner -94860 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 655-71 chr20 21489272 21489438 + 5 NA Intergenic MLT1A0|LTR|ERVL-MaLR 24709 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 649-38 chr17 71861118 71861375 + 5 NA Intergenic Intergenic 164733 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 1034-16 chr7 36577962 36578342 + 5 NA intron (NM_001177507, intron 11 of 19) HAL1|LINE|L1 21968 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 1501-5 chr7 17268380 17269028 + 5 NA Intergenic L1M2|LINE|L1 -29948 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 2092-2 chr5 178958107 178959055 + 5 NA 3' UTR (NM_001323309, exon 5 of 5) 3' UTR (NM_001323309, exon 5 of 5) 17383 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 784-30 chr2 122103634 122103842 + 5 NA Intergenic MSTB-int|LTR|ERVL-MaLR 348087 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 642-103 chr7 33784002 33784215 + 5 NA Intergenic Intergenic -120807 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 1086-19 chr8 122602343 122602614 + 5 NA Intergenic MLT1A|LTR|ERVL-MaLR -33834 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 929-26 chr5 26265266 26265695 + 5 NA Intergenic L1PA16|LINE|L1 773106 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 813-44 chr7 130573788 130573966 + 5 NA intron (NM_001290033, intron 9 of 19) L1MB7|LINE|L1 30424 NR_024086 53844 Hs.6421 NR_024086 COPG2IT1 CIT1|COPG2AS|DKFZP761N09121|NCRNA00170 COPG2 imprinted transcript 1 ncRNA 623-65 chr2 112339734 112340025 + 5 NA 3' UTR (NM_198581, exon 12 of 12) 3' UTR (NM_198581, exon 12 of 12) 64282 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 975-13 chr5 45994082 45994454 + 5 NA Intergenic ALR/Alpha|Satellite|centr -297888 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 498-160 chr3 317163 317298 + 5 NA intron (NM_001253387, intron 2 of 26) intron (NM_001253387, intron 2 of 26) -2453 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 1164-14 chr8 118630309 118630749 + 5 NA intron (NR_038210, intron 2 of 4) MLT2B5|LTR|ERVL -8566 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 987-2 chr10 42540322 42540647 + 5 NA intron (NR_026777, intron 5 of 7) L1M4c|LINE|L1 12386 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 912-18 chr19 6906927 6907291 + 5 NA intron (NM_001974, intron 9 of 20) intron (NM_001974, intron 9 of 20) 19530 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 2365 chr14 52172690 52173703 + 5 NA Intergenic Intergenic -94502 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 646-3 chr1 76650812 76651015 + 5 NA Intergenic LTR40b|LTR|ERVL 128354 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 2558 chr3 132985455 132986622 + 5 NA Intergenic L2a|LINE|L2 -52250 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 696-26 chr12 4990538 4990764 + 5 NA Intergenic L4_C_Mam|LINE|RTE-X -53228 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 1052-17 chr22 34724459 34724870 + 5 NA Intergenic L1MA10|LINE|L1 273252 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 861-12 chr2 68901204 68901553 + 5 NA Intergenic L1MA4|LINE|L1 -29981 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 1799 chr12 37881362 37882124 + 5 NA Intergenic ALR/Alpha|Satellite|centr -435031 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1302-5 chr2 100158395 100158902 + 5 NA Intergenic Intergenic -16058 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 1186-10 chr18 61677759 61678200 + 5 NA Intergenic Intergenic -70197 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 822-56 chr7 48536700 48537065 + 5 NA intron (NM_152701, intron 55 of 61) intron (NM_152701, intron 55 of 61) 365424 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 1125-9 chr21 34170480 34170874 + 5 NA Intergenic Intergenic -10000 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 908-10 chr15 98819959 98820262 + 5 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 35684 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 563-20 chr10 59922457 59922609 + 5 NA Intergenic L1M4c|LINE|L1 -15977 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 472-235 chr4 128914501 128914706 + 5 NA intron (NM_144643, intron 18 of 20) intron (NM_144643, intron 18 of 20) 102759 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 1154 chr1 55843469 55843958 + 5 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 101250 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 954-30 chr22 28579025 28579378 + 5 NA intron (NM_001145418, intron 2 of 22) (AT)n|Simple_repeat|Simple_repeat 100664 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 871-35 chr7 46297341 46297668 + 5 NA Intergenic L1MDa|LINE|L1 -376232 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 911-14 chr2 160638317 160638623 + 5 NA Intergenic Intergenic -144663 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 1173-16 chr9 117623275 117623751 + 5 NA Intergenic LTR79|LTR|ERVL -25093 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 892-19 chr2 81364135 81364378 + 5 NA Intergenic LTR78B|LTR|ERV1 102690 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 728-53 chr20 1617725 1617946 + 5 NA intron (NM_001329157, intron 1 of 5) intron (NM_001329157, intron 1 of 5) 2174 NM_001135844 10326 Hs.664861 NM_006065 ENSG00000101307 SIRPB1 CD172b|SIRP-BETA-1 signal regulatory protein beta 1 protein-coding 794-49 chr8 131619131 131619480 + 5 NA Intergenic L1MC3|LINE|L1 -284788 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 860 chr1 82731734 82732084 + 5 NA Intergenic Intergenic -171274 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 710-11 chr10 37793903 37794183 + 5 NA non-coding (NR_051997, exon 1 of 1) non-coding (NR_051997, exon 1 of 1) 1132 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 791-27 chr15 94932948 94933281 + 5 NA Intergenic Intergenic 77751 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 682-18 chr11 96672027 96672324 + 5 NA Intergenic L1ME3|LINE|L1 163750 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 916-30 chr5 156402374 156402658 + 5 NA intron (NM_001128209, intron 2 of 7) LTR43|LTR|ERV1 75352 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 663-119 chr8 131740292 131740632 + 5 NA Intergenic LTR1A2|LTR|ERV1 -163631 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 989-20 chr4 170366961 170367355 + 5 NA Intergenic L1MB8|LINE|L1 140567 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 539-202 chr8 20925891 20926092 + 5 NA Intergenic L1MEd|LINE|L1 -27642 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 881-37 chr7 69195460 69195748 + 5 NA Intergenic Intergenic 402020 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 1171-4 chr14 87502227 87502749 + 5 NA Intergenic Intergenic 152806 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 1181-17 chr7 71284768 71285337 + 5 NA intron (NM_022479, intron 1 of 10) Arthur1|DNA|hAT-Tip100 -22622 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 812-20 chr14 61558455 61558697 + 5 NA intron (NR_110417, intron 3 of 3) intron (NR_110417, intron 3 of 3) 11618 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 1375-9 chr8 132293151 132293538 + 5 NA intron (NM_004519, intron 1 of 14) MER21A|LTR|ERVL 153918 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 1140-13 chr7 82843144 82843660 + 5 NA intron (NM_033026, intron 13 of 24) L1MA8|LINE|L1 319482 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 596-144 chr7 15283087 15283344 + 5 NA intron (NM_001004320, intron 12 of 12) L1PB3|LINE|L1 278800 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 1262 chr1 246987285 246987716 + 5 NA exon (NM_020394, exon 4 of 4) exon (NM_020394, exon 4 of 4) 20557 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 1716-2 chr10 32677255 32677818 + 5 NA intron (NM_001321115, intron 22 of 43) L1M2|LINE|L1 223936 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 1602 chr10 44411749 44412424 + 5 NA Intergenic L1MCa|LINE|L1 -26989 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 795-51 chr7 55023052 55023344 + 5 NA intron (NM_001346941, intron 1 of 21) (TG)n|Simple_repeat|Simple_repeat 4166 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 709-22 chr14 46507944 46508123 + 5 NA Intergenic Intergenic 36674 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1688-3 chr4 65746784 65747398 + 5 NA Intergenic MIRc|SINE|MIR -76596 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 452-22 chr10 16665893 16666051 + 5 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -144093 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 938-10 chr14 87717925 87718283 + 5 NA Intergenic MIRb|SINE|MIR -62810 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 861-3 chr10 31681636 31681830 + 5 NA Intergenic Intergenic 227193 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 847-20 chr15 98348890 98349070 + 5 NA intron (NR_146567, intron 1 of 2) intron (NR_146567, intron 1 of 2) -17422 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 1019-5 chr10 130417521 130418081 + 5 NA Intergenic Intergenic 281392 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 774-34 chr18 10085095 10085335 + 5 NA Intergenic Intergenic 171199 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 1018-8 chr14 20066043 20066425 + 5 NA Intergenic L1M1|LINE|L1 6189 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 758-67 chr5 161758042 161758279 + 5 NA Intergenic Intergenic 72439 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 2001 chr17 26883781 26884441 + 5 NA Intergenic ALR/Alpha|Satellite|centr 205130 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 1931 chr5 72778812 72779553 + 5 NA Intergenic L1MA4|LINE|L1 -37409 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 924-11 chr10 130272673 130273103 + 5 NA Intergenic Intergenic 136479 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 1051-12 chr4 106075429 106075838 + 5 NA intron (NM_001290768, intron 26 of 26) intron (NM_001290768, intron 26 of 26) -53155 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 597-126 chr7 36891606 36891773 + 5 NA intron (NM_001206480, intron 17 of 21) MIR|SINE|MIR 27743 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 1143-7 chr2 128907501 128907986 + 5 NA Intergenic L1ME1|LINE|L1 43143 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 1056-13 chr4 73297065 73297563 + 5 NA Intergenic L1MA4|LINE|L1 -38516 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 1160-13 chr9 105617839 105618184 + 5 NA exon (NM_001198963, exon 9 of 12) exon (NM_001198963, exon 9 of 12) -44446 NM_005421 6887 Hs.247978 NM_005421 ENSG00000186051 TAL2 - TAL bHLH transcription factor 2 protein-coding 854-13 chr12 133076567 133076846 + 5 NA Intergenic L2c|LINE|L2 -3497 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 802-4 chr1 200947056 200947260 + 5 NA intron (NR_147176, intron 4 of 15) L1MEd|LINE|L1 18214 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 1100-15 chr5 46151391 46151814 + 5 NA Intergenic ALR/Alpha|Satellite|centr -455222 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 701-87 chr7 53656629 53656871 + 5 NA non-coding (NR_038371, exon 6 of 6) non-coding (NR_038371, exon 6 of 6) 155181 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 2328 chr10 15938405 15939181 + 5 NA Intergenic L1M5|LINE|L1 -78260 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 978 chr1 97646040 97646389 + 5 NA intron (NM_000110, intron 8 of 22) L1M7|LINE|L1 -150707 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 1076-15 chr3 43200014 43200428 + 5 NA Intergenic MIR3|SINE|MIR -86291 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 1268-5 chr16 81346995 81347557 + 5 NA intron (NM_022041, intron 1 of 10) intron (NM_022041, intron 1 of 10) 32310 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 898-4 chr10 26439342 26439656 + 5 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 1158 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 732-58 chr3 39524910 39525101 + 5 NA non-coding (NR_103504, exon 7 of 7) non-coding (NR_103504, exon 7 of 7) 22939 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 833-2 chr1 227840743 227840993 + 5 NA intron (NM_183062, intron 3 of 4) MLT1H-int|LTR|ERVL-MaLR 25151 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 694-129 chr8 85985002 85985252 + 5 NA Intergenic Intergenic 84541 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 1419-5 chr8 83932086 83932631 + 5 NA Intergenic Intergenic -250429 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 815-13 chr12 105045471 105045885 + 5 NA intron (NR_027752, intron 15 of 22) L1ME4b|LINE|L1 38780 NR_027752 160428 Hs.42572 NM_001034173 ENSG00000136010 ALDH1L2 mtFDH aldehyde dehydrogenase 1 family member L2 protein-coding 1108-3 chr10 111572796 111573250 + 5 NA Intergenic L2b|LINE|L2 458732 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 846-11 chr11 116534134 116534447 + 5 NA Intergenic Intergenic -105132 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 1775 chr9 96818797 96819643 + 5 NA exon (NM_001346991, exon 5 of 5) exon (NM_001346991, exon 5 of 5) 35294 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 2396 chr12 34413776 34414547 + 5 NA Intergenic ALR/Alpha|Satellite|centr 391665 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1086-10 chr14 48828296 48828642 + 5 NA Intergenic L1M5|LINE|L1 757911 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 996-21 chr5 162590269 162590683 + 5 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 522834 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 808-55 chr8 46789151 46789376 + 5 NA Intergenic L1PREC2|LINE|L1 -51623 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 846-17 chr16 71197291 71197537 + 5 NA intron (NM_001198543, intron 1 of 18) intron (NM_001198543, intron 1 of 18) 33308 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 620-142 chr8 78816084 78816426 + 5 NA Intergenic L1MA8|LINE|L1 -10732 NM_001199887 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 1415 chr14 62354409 62354882 + 5 NA Intergenic L1PB1|LINE|L1 -214672 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 935-31 chr5 24942482 24942779 + 5 NA Intergenic Intergenic -102047 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 594-33 chr12 3877026 3877182 + 5 NA Intergenic Tigger1|DNA|TcMar-Tigger -3656 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 987 chr1 40519247 40519619 + 5 NA Intergenic MLT1J|LTR|ERVL-MaLR 10714 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 1296-2 chr15 67685489 67685970 + 5 NA intron (NM_001206804, intron 13 of 21) L1MEc|LINE|L1 136635 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 824-51 chr8 137376738 137377067 + 5 NA Intergenic MLT2B4|LTR|ERVL 36686 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 786-51 chr5 4241791 4241987 + 5 NA Intergenic L1MC5a|LINE|L1 -531592 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 749-10 chr1 227695590 227695790 + 5 NA Intergenic Intergenic 2017 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 1194-5 chr3 4181386 4181853 + 5 NA Intergenic MIR3|SINE|MIR -121685 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 854-22 chr2 34160094 34160444 + 5 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 93043 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 795-54 chr8 13083369 13083629 + 5 NA 3' UTR (NM_006094, exon 14 of 14) 3' UTR (NM_006094, exon 14 of 14) 32745 NM_001164271 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 951-20 chr22 32011701 32011916 + 5 NA intron (NR_149128, intron 4 of 4) L1M4c|LINE|L1 -31453 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 1317-2 chr11 50575855 50576367 + 5 NA Intergenic ALR/Alpha|Satellite|centr 166964 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 818-62 chr8 87562300 87562761 + 5 NA Intergenic L1ME2z|LINE|L1 311485 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 658-29 chr11 70450108 70450307 + 5 NA Intergenic MER6C|DNA|TcMar-Tigger 51678 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 801-67 chr9 83088615 83088832 + 5 NA Intergenic L1M4|LINE|L1 -25581 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 817-3 chr1 105167323 105167594 + 5 NA Intergenic L1PB1|LINE|L1 451477 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 546-88 chr17 54615653 54615832 + 5 NA Intergenic L1PA16|LINE|L1 -284949 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 908-4 chr10 93129006 93129366 + 5 NA Intergenic L1MC5|LINE|L1 55293 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 1232-4 chr3 44741783 44742261 + 5 NA Intergenic Intergenic 12387 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 1592-3 chr5 30465455 30466155 + 5 NA Intergenic L1M3c|LINE|L1 585245 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1001-15 chr4 86879295 86879669 + 5 NA intron (NM_144645, intron 4 of 4) L1M4c|LINE|L1 12940 NM_001369889 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 697-54 chr4 374319 374631 + 5 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 24318 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 465-154 chr20 19080236 19080423 + 5 NA Intergenic Intergenic -132313 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 1100-10 chr2 15112897 15113266 + 5 NA Intergenic HAL1M8|LINE|L1 448253 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1214-4 chr20 56233371 56233843 + 5 NA Intergenic Intergenic -15125 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 759-16 chr12 13220489 13220762 + 5 NA TTS (NM_001423) TTS (NM_001423) 23899 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 866-22 chr17 60067964 60068430 + 5 NA intron (NM_022070, intron 7 of 19) MER105|DNA|hAT-Charlie 10734 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 872-11 chr10 115064652 115064915 + 5 NA Intergenic Intergenic -28582 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 1268-2 chr13 70053546 70054037 + 5 NA intron (NM_020866, intron 1 of 10) intron (NM_020866, intron 1 of 10) -53422 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 1203-3 chr11 84309547 84309952 + 5 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 7590 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 814-55 chr7 7279763 7279968 + 5 NA Intergenic Intergenic 24711 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 857-5 chr1 158943877 158944108 + 5 NA intron (NM_198928, intron 6 of 8) intron (NM_198928, intron 6 of 8) 12440 NM_198929 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 635-32 chr15 23744186 23744373 + 5 NA Intergenic L1M4|LINE|L1 -56974 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 1412-3 chr19 27661042 27661468 + 5 NA Intergenic ALR/Alpha|Satellite|centr -132176 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 903-26 chr4 49108238 49108569 + 5 NA Intergenic (CATTC)n|Satellite|Satellite 121761 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 998-7 chr12 3143632 3143858 + 5 NA intron (NM_006675, intron 2 of 8) L1MC4a|LINE|L1 66366 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 885-26 chr7 62948534 62948929 + 5 NA Intergenic ALR/Alpha|Satellite|centr 355325 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 588-43 chr15 47210885 47211124 + 5 NA intron (NM_001198999, intron 1 of 19) A-rich|Low_complexity|Low_complexity 26915 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 1187-5 chr17 77627557 77627942 + 5 NA Intergenic L2c|LINE|L2 80808 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 839-5 chr11 50501979 50502170 + 5 NA Intergenic ALR/Alpha|Satellite|centr 92927 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1610-3 chr7 1636566 1637283 + 4 NA Intergenic AluJo|SINE|Alu 22454 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 1213-6 chr18 40892636 40892975 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR 627872 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 405-91 chr14 88685203 88685404 + 4 NA intron (NM_183387, intron 19 of 42) intron (NM_183387, intron 19 of 42) 90883 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 443-194 chr3 23022512 23022719 + 4 NA Intergenic L1PB1|LINE|L1 179963 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 1292-3 chr22 34787943 34788732 + 4 NA intron (NR_138042, intron 3 of 4) L1ME4c|LINE|L1 209579 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 601-121 chr5 66123059 66123412 + 4 NA Intergenic L2a|LINE|L2 -21065 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 809-13 chr16 54310054 54310392 + 4 NA Intergenic Intergenic -23436 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 479-56 chr14 47099902 47100092 + 4 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 243249 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 362-360 chr5 141065791 141065930 + 4 NA intron (NR_105056, intron 1 of 3) intron (NR_105056, intron 1 of 3) 12171 NR_105056 101926905 Hs.570900 NR_105056 LOC101926905 - uncharacterized LOC101926905 ncRNA 1016-19 chr5 170826949 170827351 + 4 NA Intergenic Intergenic -34868 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 776-54 chr7 124706295 124706638 + 4 NA Intergenic L1MA4A|LINE|L1 59326 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 1126-14 chr8 136794514 136794829 + 4 NA intron (NR_147196, intron 3 of 5) intron (NR_147196, intron 3 of 5) 263873 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 156-104 chr8 103282245 103282312 + 4 NA intron (NR_148213, intron 2 of 3) MIR|SINE|MIR -16216 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 745-21 chr18 13767729 13768213 + 4 NA Intergenic L1PA15|LINE|L1 41298 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 659-53 chr2 77645913 77646267 + 4 NA Intergenic Intergenic -123657 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 1115-7 chr2 112035746 112036408 + 4 NA Intergenic L1M4a2|LINE|L1 -19192 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 861-25 chr4 116905985 116906336 + 4 NA Intergenic Intergenic 179416 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 1396-7 chr2 133108854 133109588 + 4 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) -156974 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 1305-6 chr4 116974185 116974701 + 4 NA Intergenic L1MEg|LINE|L1 111133 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 532-186 chr4 82624248 82624433 + 4 NA Intergenic Intergenic -2903 NR_024087 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 682-84 chr5 127741285 127741589 + 4 NA intron (NM_001317938, intron 2 of 6) Charlie4z|DNA|hAT-Charlie 38048 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 523-257 chr7 114114098 114114280 + 4 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 27862 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 565-46 chr15 53651194 53651356 + 4 NA intron (NM_182758, intron 14 of 19) L2a|LINE|L2 108388 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 660-70 chr4 35096218 35096416 + 4 NA Intergenic L1PA12|LINE|L1 -826570 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 388-216 chr3 6838855 6838956 + 4 NA Intergenic MER31-int|LTR|ERV1 -22210 NM_000844 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 456-332 chr8 136877808 136878029 + 4 NA intron (NR_147196, intron 4 of 5) Tigger4|DNA|TcMar-Tigger 347120 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 697-48 chr20 41918717 41918967 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -300465 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 628-126 chr7 136204108 136204348 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -226869 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 877 chr10 106292560 106292911 + 4 NA Intergenic MER94|DNA|hAT-Blackjack 152570 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 691-89 chr8 134168267 134168602 + 4 NA Intergenic Intergenic 281938 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 498-191 chr4 49153153 49153317 + 4 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 166593 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 786-59 chr6 162286859 162287189 + 4 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -440108 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 694-37 chr14 45936566 45936789 + 4 NA Intergenic L1PA16|LINE|L1 -127482 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 457-81 chr16 35110913 35111106 + 4 NA Intergenic L1M2|LINE|L1 59382 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 768-19 chr14 87832584 87832896 + 4 NA Intergenic HAL1ME|LINE|L1 160442 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 676-86 chr3 108147280 108147615 + 4 NA Intergenic Intergenic 21626 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 622-62 chr2 96092800 96093056 + 4 NA Intergenic Intergenic 23643 NM_000682 151 Hs.247686 NM_000682 ENSG00000274286 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR adrenoceptor alpha 2B protein-coding 909-4 chr11 50537001 50537315 + 4 NA Intergenic ALR/Alpha|Satellite|centr 128011 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 798-25 chr19 56528227 56528588 + 4 NA 3' UTR (NM_020813, exon 5 of 5) 3' UTR (NM_020813, exon 5 of 5) -10541 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 440-22 chr10 42365676 42365939 + 4 NA intron (NR_024380, intron 1 of 2) L1PA5|LINE|L1 2238 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 661-29 chr15 99947901 99948167 + 4 NA Intergenic MIR|SINE|MIR 141011 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 485-65 chr13 55408965 55409143 + 4 NA Intergenic L1PBa|LINE|L1 234600 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 772-33 chr20 58119515 58119974 + 4 NA Intergenic L1MC3|LINE|L1 -31158 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 930-34 chr9 27765207 27765590 + 4 NA Intergenic Intergenic -191532 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 567-57 chr15 25551361 25551652 + 4 NA Intergenic L1MD2|LINE|L1 -112450 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 1052 chr10 78325967 78326441 + 4 NA Intergenic L1MA4A|LINE|L1 58862 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 596-171 chr8 132818776 132818999 + 4 NA intron (NM_001277196, intron 11 of 19) intron (NM_001277196, intron 11 of 19) 43499 NM_016018 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 808-31 chr2 213468704 213469077 + 4 NA intron (NR_047660, intron 8 of 14) MLT2A1|LTR|ERVL 184426 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 1102-5 chr16 85139278 85139780 + 4 NA intron (NR_033984, intron 1 of 2) L2b|LINE|L2 2379 NR_033984 400548 Hs.592054 NR_033984 ENSG00000278214 LINC02139 - long intergenic non-protein coding RNA 2139 ncRNA 877-4 chr12 63770930 63771329 + 4 NA Intergenic MER110|LTR|ERV1 -8780 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 1058-19 chr8 89124835 89125110 + 4 NA Intergenic Intergenic 632739 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 737-38 chr19 16738643 16739033 + 4 NA intron (NM_001347994, intron 3 of 18) (TA)n|Simple_repeat|Simple_repeat 7646 NM_001347994 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 747-76 chrUn_GL000216v2 64378 64603 + 4 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 719-54 chr3 176887858 176888266 + 4 NA Intergenic L1MA3|LINE|L1 -71061 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 983-21 chr8 29960911 29961344 + 4 NA Intergenic MER103C|DNA|hAT-Charlie -3779 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 624-6 chr1 158907845 158908049 + 4 NA Intergenic L1MA8|LINE|L1 -23605 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 1184-4 chr14 101669743 101670279 + 4 NA Intergenic L1MA8|LINE|L1 -60426 NR_026774 145200 Hs.150840 NR_026774 ENSG00000258512 LINC00239 C14orf72|NCRNA00239 long intergenic non-protein coding RNA 239 ncRNA 596-73 chr15 73180498 73180798 + 4 NA intron (NM_002499, intron 7 of 28) intron (NM_002499, intron 7 of 28) -119262 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 634-67 chr19 11788540 11788799 + 4 NA Intergenic L1MA3|LINE|L1 -9854 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 914-8 chr13 71707555 71708077 + 4 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 159376 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 912-27 chr20 25194287 25194654 + 4 NA intron (NR_109994, intron 1 of 5) intron (NR_109994, intron 1 of 5) -1200 NM_001322387 955 Hs.500375 NM_001247 ENSG00000197586 ENTPD6 CD39L2|IL-6SAG|IL6ST2|NTPDase-6|dJ738P15.3 ectonucleoside triphosphate diphosphohydrolase 6 protein-coding 830-7 chr10 91182471 91182859 + 4 NA intron (NM_001257101, intron 1 of 9) L1PA13|LINE|L1 19653 NR_046435 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 530-10 chr1 110914952 110915189 + 4 NA Intergenic L1ME3B|LINE|L1 41922 NM_000560 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 420-304 chr9 25069364 25069530 + 4 NA Intergenic Intergenic -523550 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 584-21 chr10 78126816 78127126 + 4 NA Intergenic L1ME4a|LINE|L1 93108 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 363-234 chr2 166880692 166880903 + 4 NA Intergenic Intergenic -7690 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 1395-5 chr5 156180846 156181533 + 4 NA Intergenic LTR48|LTR|ERV1 -145568 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 526-221 chr6 145509541 145509726 + 4 NA Intergenic L1PA15-16|LINE|L1 177244 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 818-38 chr3 94693145 94693472 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -244955 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 732-14 chr10 96436337 96436687 + 4 NA intron (NM_012465, intron 3 of 20) L1M5|LINE|L1 -77147 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 1252-10 chr8 139999155 139999706 + 4 NA intron (NM_001160372, intron 18 of 22) L1MEf|LINE|L1 101105 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1092-10 chr19 43956831 43957273 + 4 NA intron (NM_001297589, intron 1 of 4) MER57B2|LTR|ERV1 5807 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 747-29 chr2 49055182 49055494 + 4 NA intron (NM_000145, intron 2 of 9) L1M2c|LINE|L1 -4265 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 897-10 chr11 63581804 63582238 + 4 NA intron (NM_007069, intron 3 of 3) MLT1D|LTR|ERVL-MaLR -18642 NM_017878 54979 Hs.272805 NM_017878 ENSG00000133328 PLAAT2 HRASLS2|PLA1/2-2|PLAAT-2 phospholipase A and acyltransferase 2 protein-coding 955-15 chr5 9831419 9831710 + 4 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -22813 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 533-34 chr12 18061761 18062087 + 4 NA Intergenic L1MB1|LINE|L1 28269 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 586-121 chr5 63264073 63264228 + 4 NA Intergenic L1ME1|LINE|L1 685331 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 635-43 chr18 14097090 14097274 + 4 NA intron (NR_033354, intron 1 of 5) intron (NR_033354, intron 1 of 5) 35253 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 1123-16 chr5 65340799 65341242 + 4 NA intron (NR_135689, intron 7 of 25) L1ME4c|LINE|L1 140900 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 834-55 chr9 8209949 8210297 + 4 NA Intergenic Intergenic -410345 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 604-63 chr17 53049510 53049825 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR 64162 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 466-289 chr9 16770289 16770462 + 4 NA intron (NM_017637, intron 1 of 6) intron (NM_017637, intron 1 of 6) 43561 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 2516 chr19 36720410 36721321 + 4 NA 3' UTR (NM_001300979, exon 6 of 6) 3' UTR (NM_001300979, exon 6 of 6) 17184 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 1066 chr1 111846523 111847024 + 4 NA intron (NM_172198, intron 2 of 6) MIRb|SINE|MIR 10132 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 1004-6 chr11 62247095 62247549 + 4 NA Intergenic MIRb|SINE|MIR 5083 NM_006551 10647 Hs.204096 NM_006551 ENSG00000124935 SCGB1D2 LIPB|LPHB|LPNB secretoglobin family 1D member 2 protein-coding 523-35 chr10 66222682 66222866 + 4 NA intron (NM_001127384, intron 13 of 17) GA-rich|Low_complexity|Low_complexity 651349 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 1151-6 chr18 13943971 13944456 + 4 NA Intergenic L1ME4b|LINE|L1 -28506 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 836-41 chr4 38963591 38963964 + 4 NA Intergenic Intergenic 68632 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 474-257 chr6 155869696 155869870 + 4 NA Intergenic Intergenic -77014 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 913-10 chr14 69945100 69945462 + 4 NA intron (NM_001034852, intron 1 of 11) L2c|LINE|L2 -32852 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 841-28 chr4 115295511 115295937 + 4 NA Intergenic Intergenic -182104 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 825-24 chr2 193712447 193712746 + 4 NA Intergenic Intergenic -631673 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 978-20 chr9 97848826 97849184 + 4 NA intron (NR_147055, intron 1 of 10) CpG 4075 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 573-87 chr19 27682685 27682859 + 4 NA Intergenic ALR/Alpha|Satellite|centr -110659 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 717-34 chr17 27819976 27820269 + 4 NA Intergenic L1ME3|LINE|L1 -19593 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 1042-13 chr4 63163069 63163674 + 4 NA Intergenic Intergenic -1001606 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 431-40 chr10 53181755 53181973 + 4 NA Intergenic L1PB2|LINE|L1 -410164 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 573-105 chr20 53462399 53462655 + 4 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -90243 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 678-116 chrX 116270895 116271196 + 4 NA Intergenic Intergenic 100301 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 1006-25 chr6 36156645 36157150 + 4 NA Intergenic Intergenic 26384 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 285-61 chr11 56085965 56086066 + 4 NA Intergenic Intergenic -7293 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 510-182 chr3 46471553 46471731 + 4 NA intron (NM_001321122, intron 1 of 19) intron (NM_001321122, intron 1 of 19) -6737 NM_002343 4057 Hs.529517 NM_002343 ENSG00000012223 LTF GIG12|HEL110|HLF2|LF lactotransferrin protein-coding 544-169 chr5 3975270 3975432 + 4 NA Intergenic L1MEf|LINE|L1 379519 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 795-41 chr4 138499222 138499584 + 4 NA Intergenic L1PB1|LINE|L1 189692 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 818-13 chr12 8520557 8520799 + 4 NA intron (NM_080387, intron 5 of 5) intron (NM_080387, intron 5 of 5) 7175 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 775-56 chr3 30267676 30267914 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -251073 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 1142 chr10 53094826 53095302 + 4 NA Intergenic L1MC2|LINE|L1 -323364 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 468-337 chr9 101872170 101872375 + 4 NA Intergenic L1P3|LINE|L1 -133692 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 646-19 chr10 92136355 92136560 + 4 NA intron (NM_001178137, intron 6 of 9) L1M1|LINE|L1 106822 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 675-60 chr3 102126776 102127153 + 4 NA Intergenic MLT1A|LTR|ERVL-MaLR -36741 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 841-11 chr14 55932563 55932962 + 4 NA Intergenic L1MEd|LINE|L1 -136088 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 886-6 chr10 49062201 49062553 + 4 NA intron (NM_001031746, intron 5 of 7) L1ME1|LINE|L1 53145 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 719-64 chr5 68639069 68639377 + 4 NA Intergenic L1MC3|LINE|L1 346646 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 518-141 chr2 124535990 124536234 + 4 NA intron (NM_130773, intron 10 of 23) intron (NM_130773, intron 10 of 23) 510825 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 550-191 chr5 160668542 160668735 + 4 NA intron (NM_001366652, intron 6 of 24) intron (NM_001366652, intron 6 of 24) 16753 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 798-24 chr19 23644640 23644921 + 4 NA Intergenic L1PA17|LINE|L1 42432 NM_138330 171392 Hs.264345 NM_138330 ENSG00000197372 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 603-167 chr8 118335428 118335628 + 4 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -223709 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 1471-3 chr2 49061526 49062207 + 4 NA intron (NM_000145, intron 2 of 9) L1MA5|LINE|L1 2263 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 651-90 chr4 57235825 57236162 + 4 NA Intergenic Intergenic -125608 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 685-91 chr7 91708837 91709106 + 4 NA Intergenic L1MA4A|LINE|L1 171731 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 613-137 chr8 102144482 102144758 + 4 NA Intergenic L1MEc|LINE|L1 19188 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 954-25 chr2 51260037 51260399 + 4 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 227617 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 558-197 chr7 32007824 32008091 + 4 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 62450 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 615-120 chr6 40288392 40288695 + 4 NA Intergenic Intergenic 67463 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 779-40 chr4 162554479 162554688 + 4 NA Intergenic AluSz|SINE|Alu -390549 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 573-111 chr21 30373439 30373740 + 4 NA Intergenic Intergenic -1318 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 672-59 chr2 126014033 126014233 + 4 NA Intergenic L2a|LINE|L2 103852 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 414-99 chr15 80333266 80333415 + 4 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 8465 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 546-140 chr3 10795160 10795448 + 4 NA Intergenic Intergenic -20924 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 519-114 chr2 126350232 126350495 + 4 NA Intergenic L1MB1|LINE|L1 -232378 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 527-256 chr7 145524620 145524843 + 4 NA Intergenic Intergenic -688678 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 852-42 chr6 115495766 115496222 + 4 NA Intergenic Intergenic 147841 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 503-264 chr7 51674932 51675238 + 4 NA Intergenic L1MA9|LINE|L1 -281829 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 836-26 chr16 81971502 81971836 + 4 NA Intergenic L1MB1|LINE|L1 39801 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 1118-12 chr2 210957776 210958262 + 4 NA Intergenic Intergenic 340448 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 945-18 chr9 70455963 70456260 + 4 NA Intergenic Intergenic -41454 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 886-9 chr14 38039032 38039487 + 4 NA Intergenic Intergenic -137135 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 1108-14 chr5 127253522 127254111 + 4 NA Intergenic L1M5|LINE|L1 -36948 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 550-19 chr10 9831068 9831352 + 4 NA Intergenic MER3|DNA|hAT-Charlie -227512 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 696-50 chr17 53055383 53055676 + 4 NA Intergenic Intergenic 70024 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 710-62 chr3 38796629 38796941 + 4 NA Intergenic L2b|LINE|L2 -2775 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 368-271 chr21 20229701 20229849 + 4 NA Intergenic Tigger13a|DNA|TcMar-Tigger 28910 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 607-90 chr21 35424231 35424497 + 4 NA intron (NR_073512, intron 2 of 2) intron (NR_073512, intron 2 of 2) 156400 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 554-169 chr5 27251349 27251571 + 4 NA Intergenic Intergenic -212874 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 612-42 chr14 87627126 87627339 + 4 NA Intergenic MER45B|DNA|hAT-Tip100 28062 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 500-257 chr6 121938520 121938836 + 4 NA Intergenic L1M4|LINE|L1 -460873 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 642-2 chr1 82711145 82711316 + 4 NA Intergenic L1ME3Cz|LINE|L1 -191953 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 882 chr1 49958737 49959193 + 4 NA intron (NM_001323575, intron 1 of 12) intron (NM_001323575, intron 1 of 12) 64989 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 799-19 chr16 74054432 74054783 + 4 NA Intergenic Intergenic 160914 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 560-47 chr14 48003073 48003332 + 4 NA Intergenic MIRb|SINE|MIR -208188 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 567-51 chr14 24579289 24579476 + 4 NA Intergenic L1ME3B|LINE|L1 -3132 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 610-95 chr20 7894674 7894887 + 4 NA intron (NM_017545, intron 5 of 7) intron (NM_017545, intron 5 of 7) 45678 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 856-29 chr20 59142604 59143142 + 4 NA Intergenic L2b|LINE|L2 -48147 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 446-331 chrX 38538627 38538828 + 4 NA Intergenic Intergenic -22751 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 800-6 chr1 189261874 189262195 + 4 NA Intergenic L1PA7|LINE|L1 1213976 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 1028-4 chr12 118730290 118730765 + 4 NA Intergenic Intergenic 31152 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 663-116 chr8 81205732 81206043 + 4 NA Intergenic Intergenic -74649 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 736-56 chr3 154935339 154935612 + 4 NA Intergenic Intergenic -88649 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 573-85 chr19 9373319 9373487 + 4 NA intron (NM_003451, intron 3 of 8) L1MA9|LINE|L1 -2913 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 566-67 chr17 52115325 52115545 + 4 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 43279 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 501-243 chr7 64346856 64347018 + 4 NA intron (NM_001170905, intron 3 of 3) L1MB2|LINE|L1 32976 NM_001170905 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 956-24 chr6 50501811 50502159 + 4 NA Intergenic L1MA4A|LINE|L1 -211559 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 775-58 chr3 80292937 80293377 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -471740 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 400-12 chr1 104806307 104806483 + 4 NA Intergenic Intergenic 733372 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 677-79 chr7 100975636 100975820 + 4 NA intron (NM_001164462, intron 1 of 11) intron (NM_001164462, intron 1 of 11) 6105 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 629-123 chr8 4689339 4689558 + 4 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 305466 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 948-17 chr19 36816776 36817135 + 4 NA TTS (NM_206894) TTS (NM_206894) 19392 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 695-87 chr5 166238780 166239099 + 4 NA Intergenic L1MB3|LINE|L1 687431 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 415-110 chr19 43861213 43861357 + 4 NA Intergenic L1MA5A|LINE|L1 18851 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 513-39 chr11 5057551 5057834 + 4 NA TTS (NM_001005164) TTS (NM_001005164) 1935 NM_001005164 119678 Hs.553557 NM_001005164 ENSG00000176787 OR52E2 - olfactory receptor family 52 subfamily E member 2 protein-coding 600-37 chr15 47031190 47031352 + 4 NA Intergenic L1P4a|LINE|L1 -152818 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 727-30 chr14 53860335 53860528 + 4 NA Intergenic MIRb|SINE|MIR 88053 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 1416 chr1 48831157 48831759 + 4 NA intron (NR_136623, intron 5 of 12) L2c|LINE|L2 -54489 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 607-92 chr22 48095350 48095506 + 4 NA Intergenic Intergenic -178936 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 812-29 chr19 37539243 37539625 + 4 NA 3' UTR (NM_001013659, exon 8 of 8) 3' UTR (NM_001013659, exon 8 of 8) -9515 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 630-25 chr13 83958813 83959110 + 4 NA Intergenic Intergenic -76487 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 1325-2 chr15 95702500 95703227 + 4 NA Intergenic Intergenic 269770 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 670-59 chr2 36611854 36612129 + 4 NA Intergenic Intergenic -13823 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 703-26 chr14 34966667 34967027 + 4 NA intron (NR_151701, intron 2 of 4) intron (NR_151701, intron 2 of 4) 15719 NR_151701 100506157 NR_151701 SRP54-AS1 - SRP54 antisense RNA 1 (head to head) ncRNA 1092-11 chr2 6204588 6205275 + 4 NA Intergenic AluSx1|SINE|Alu 170491 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 286-484 chr9 114999030 114999166 + 4 NA Intergenic L1MB8|LINE|L1 -68503 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 626-69 chr2 107398578 107398870 + 4 NA Intergenic Intergenic -49199 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 885-5 chr11 115038890 115039229 + 4 NA Intergenic HAL1|LINE|L1 -294518 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 478-128 chr19 53576383 53576529 + 4 NA intron (NM_001317121, intron 4 of 4) intron (NM_001317121, intron 4 of 4) 21149 NM_001079907 55422 Hs.185674 NM_018555 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 656-17 chr10 5116120 5116345 + 4 NA Intergenic HERVL-int|LTR|ERVL 21818 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 1081-10 chr20 48007638 48008224 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -17814 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 456-201 chr3 82576554 82576694 + 4 NA Intergenic Intergenic 590482 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 877-25 chr5 62806419 62806877 + 4 NA Intergenic Intergenic 227829 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 677-44 chr2 48536831 48537108 + 4 NA intron (NM_001198595, intron 2 of 4) L1M5|LINE|L1 6800 NM_001198595 11037 Hs.44385 NM_006873 ENSG00000243244 STON1 SALF|SBLF|STN1|STNB1 stonin 1 protein-coding 993-21 chr6 78920622 78921101 + 4 NA Intergenic L1PA15|LINE|L1 53310 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 580-127 chr3 191833111 191833408 + 4 NA Intergenic L1MEg|LINE|L1 372096 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 418-278 chr8 35289926 35290125 + 4 NA intron (NM_080872, intron 1 of 16) L1MA7|LINE|L1 54550 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 636-133 chr7 47943727 47943906 + 4 NA intron (NM_138295, intron 1 of 56) intron (NM_138295, intron 1 of 56) 4675 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 815-4 chr1 217214067 217214521 + 4 NA Intergenic Intergenic -76592 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 760-63 chr5 165527369 165527728 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR 1057269 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 700-5 chr1 107638305 107638485 + 4 NA intron (NM_006113, intron 20 of 26) L1ME1|LINE|L1 50104 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 667-27 chr14 48308118 48308441 + 4 NA Intergenic HERVL-int|LTR|ERVL -513265 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 1982 chr4 58006272 58007242 + 4 NA Intergenic L1MB3|LINE|L1 529571 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 692-70 chr4 33331244 33331436 + 4 NA Intergenic Intergenic 708553 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 796-7 chr11 33488387 33488792 + 4 NA intron (NM_012194, intron 1 of 20) MIR|SINE|MIR 112481 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 926-26 chr7 80165458 80165936 + 4 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 29913 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 622-115 chr6 46535015 46535246 + 4 NA Intergenic L1MB7|LINE|L1 -43063 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 893-18 chr14 54309369 54309882 + 4 NA Intergenic Intergenic -87243 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 394-144 chr18 67939383 67939545 + 4 NA Intergenic Intergenic -124642 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 1044-9 chr17_KI270729v1_random 49838 50448 + 4 NA NA (GAATG)n|Satellite|Satellite NA NA 536-44 chr11 24249082 24249347 + 4 NA Intergenic Intergenic -247839 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 599-52 chr18 77391759 77392113 + 4 NA Intergenic L1M4|LINE|L1 142088 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 1242-2 chr12 8830968 8831433 + 4 NA intron (NM_144670, intron 4 of 35) AluJb|SINE|Alu 8579 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 567-34 chr11 78833960 78834143 + 4 NA intron (NM_001098816, intron 12 of 33) HAL1|LINE|L1 -259187 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 826-34 chr20 33205160 33205594 + 4 NA intron (NR_026760, intron 6 of 8) MIRb|SINE|MIR 11772 NR_026760 317716 Hs.434194 NM_173859 ENSG00000183566 BPIFA4P BASE BPI fold containing family A member 4, pseudogene pseudo 682-68 chr3 179976161 179976391 + 4 NA intron (NM_016559, intron 1 of 14) L2|LINE|L2 -2051 NM_001256755 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 1389-3 chr20 42732460 42733208 + 4 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 47351 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 728-70 chr5 14546844 14547099 + 4 NA Intergenic L2a|LINE|L2 -34821 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 305-423 chr5 20274434 20274515 + 4 NA intron (NM_001349556, intron 1 of 13) L1ME2|LINE|L1 -31077 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 1269-9 chr8 133414266 133414902 + 4 NA Intergenic Tigger4|DNA|TcMar-Tigger -117280 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 546-92 chr18 5243231 5243489 + 4 NA intron (NR_015389, intron 2 of 2) intron (NR_015389, intron 2 of 2) 5260 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 699-44 chr18 3877183 3877397 + 4 NA promoter-TSS (NR_038895) promoter-TSS (NR_038895) -890 NR_038895 201477 Hs.627208 NR_038895 ENSG00000263724 DLGAP1-AS3 - DLGAP1 antisense RNA 3 ncRNA 840-50 chr8 100583961 100584215 + 4 NA intron (NM_152628, intron 12 of 13) intron (NM_152628, intron 12 of 13) -24329 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 602-12 chr10 76570310 76570593 + 4 NA Intergenic L1MEf|LINE|L1 -317593 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 730-67 chr6 154402443 154402674 + 4 NA 3' UTR (NM_173515, exon 13 of 13) 3' UTR (NM_173515, exon 13 of 13) 31515 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 1197-6 chr3 78086873 78087458 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -38202 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 708-24 chr14 45423681 45424086 + 4 NA Intergenic MER57-int|LTR|ERV1 -170681 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 650-115 chr7 38679157 38679397 + 4 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 7812 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 611-121 chr5 110579736 110579945 + 4 NA intron (NM_001039763, intron 10 of 13) L1MB1|LINE|L1 -65925 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 464-201 chr5 60344780 60344935 + 4 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 27806 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 577-114 chr3 184511 184772 + 4 NA Intergenic Intergenic -11955 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 683-84 chr8 15035802 15036053 + 4 NA intron (NM_139167, intron 1 of 7) L1MA8|LINE|L1 -182417 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 922-10 chr12 112669331 112669732 + 4 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 25645 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 652-91 chr4 185884364 185884609 + 4 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) 71886 NM_001270771 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 843-29 chr3 81674350 81674722 + 4 NA intron (NM_000158, intron 2 of 15) intron (NM_000158, intron 2 of 15) 87109 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 1672-4 chr4 66164289 66165151 + 4 NA Intergenic MER61F|LTR|ERV1 -112104 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 394-258 chr5 25471863 25472011 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 280984 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 1355-6 chr5 51235711 51236329 + 4 NA Intergenic Intergenic 147312 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 505-164 chr2 199153924 199154115 + 4 NA Intergenic L2c|LINE|L2 303920 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 698-57 chr3 43123479 43123732 + 4 NA Intergenic L1MEg|LINE|L1 -17526 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 630-28 chr14 40778978 40779182 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -175631 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 720-16 chr11 26871571 26871893 + 4 NA Intergenic Intergenic -122380 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 399-38 chr10 81513764 81513919 + 4 NA Intergenic Intergenic -361353 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 572-82 chr2 34944281 34944525 + 4 NA Intergenic L1M5|LINE|L1 266846 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 664-90 chr5 156322164 156322516 + 4 NA Intergenic Intergenic -4417 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 960-7 chr12 33276840 33277324 + 4 NA Intergenic L1MDa|LINE|L1 162737 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 801-49 chr6 61308096 61308521 + 4 NA Intergenic ALR/Alpha|Satellite|centr -265822 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 730-78 chr8 86824263 86824643 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR -41962 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 724-30 chr19 56883118 56883431 + 4 NA Intergenic L1MB2|LINE|L1 42372 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 730-56 chr5 13383644 13383871 + 4 NA Intergenic L1PA16|LINE|L1 -350871 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 975-2 chr1 245251899 245252472 + 4 NA intron (NM_018012, intron 2 of 14) AluJb|SINE|Alu -17668 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 561-163 chr5 64210504 64210795 + 4 NA intron (NM_001113561, intron 2 of 7) intron (NM_001113561, intron 2 of 7) 44806 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 2158-2 chr9 96757536 96758562 + 4 NA 3' UTR (NM_014930, exon 6 of 6) 3' UTR (NM_014930, exon 6 of 6) 20038 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 388-119 chr16 9205724 9205872 + 4 NA Intergenic Intergenic 114154 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 1017-19 chr5 174012513 174013038 + 4 NA Intergenic L1M5|LINE|L1 23605 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 610-50 chr14 53503081 53503267 + 4 NA Intergenic Intergenic 349820 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 541-127 chr2 141086341 141086541 + 4 NA intron (NM_018557, intron 7 of 90) L1MC4|LINE|L1 -499756 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 534-237 chr7 56504084 56504278 + 4 NA Intergenic Intergenic 7958 NR_026929 222029 Hs.568108 NR_026929 DKFZp434L192 - uncharacterized protein DKFZp434L192 ncRNA 780-28 chr2 80874683 80875009 + 4 NA Intergenic Intergenic 561467 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 744-26 chr17 61718030 61718326 + 4 NA intron (NM_032043, intron 16 of 19) L1MEc|LINE|L1 -126959 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 574-177 chr8 46165897 46166157 + 4 NA Intergenic ALR/Alpha|Satellite|centr 451616 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 720-95 chr9 77491119 77491339 + 4 NA intron (NR_121184, intron 2 of 4) L1M3f|LINE|L1 43580 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 348-573 chrX 96225781 96225891 + 4 NA Intergenic Intergenic 112066 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 542-112 chr2 214815491 214815733 + 4 NA intron (NR_110292, intron 1 of 3) intron (NR_110292, intron 1 of 3) 5383 NR_110292 101928103 Hs.665619 NR_110292 ENSG00000229267 SNHG31 - small nucleolar RNA host gene 31 ncRNA 640-109 chr5 29733545 29733872 + 4 NA Intergenic L1PA13|LINE|L1 -146852 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 575-195 chr8 99136070 99136476 + 4 NA intron (NM_017890, intron 11 of 61) intron (NM_017890, intron 11 of 61) 123007 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 790-25 chr2 123526971 123527313 + 4 NA Intergenic Intergenic -453661 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 501-45 chr12 14244846 14245111 + 4 NA Intergenic Intergenic -120654 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 438-198 chr4 91492369 91492510 + 4 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 784863 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 825-31 chr3 68594168 68594559 + 4 NA Intergenic L2c|LINE|L2 93726 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 692-73 chr4 96639913 96640150 + 4 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 329328 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 807-41 chr4 100692990 100693334 + 4 NA Intergenic Tigger9a|DNA|TcMar-Tigger -18049 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 670-67 chr2 144621761 144622013 + 4 NA Intergenic L1PA13|LINE|L1 -46080 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 1272-7 chr7 71883491 71883903 + 4 NA intron (NM_001363460, intron 4 of 5) LTR47A|LTR|ERVL 453694 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 658-126 chr8 131000990 131001363 + 4 NA intron (NM_001115, intron 1 of 17) MIR|SINE|MIR 39733 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 876-25 chr3 99105656 99106140 + 4 NA Intergenic Intergenic -204203 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 1012-8 chr3 84589314 84589670 + 4 NA Intergenic L1MC4|LINE|L1 280083 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 598-82 chr20 58526178 58526463 + 4 NA intron (NR_034147, intron 5 of 6) L1ME1|LINE|L1 -10921 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 859-6 chr11 79148275 79148626 + 4 NA intron (NM_001098816, intron 4 of 33) L3|LINE|CR1 253659 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 572-68 chr16 86028288 86028531 + 4 NA Intergenic Intergenic 110062 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 723-65 chr6 61873670 61874021 + 4 NA intron (NM_001350622, intron 6 of 9) L1ME3D|LINE|L1 299715 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 698-5 chr1 51154635 51154933 + 4 NA Intergenic L1MA9|LINE|L1 52556 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 1466-5 chr3 98939162 98939769 + 4 NA Intergenic L1ME1|LINE|L1 -37770 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 794 chr1 41218407 41218775 + 4 NA intron (NM_001172218, intron 1 of 15) MLT1C|LTR|ERVL-MaLR 23715 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 665-55 chr21 29274203 29274518 + 4 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -24562 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 712-85 chr6 108702536 108702789 + 4 NA Intergenic L1MEg|LINE|L1 -48992 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 712-74 chr5 63685390 63685721 + 4 NA Intergenic MER4A1_|LTR|ERV1 276737 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 372-60 chr10 115884025 115884238 + 4 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 310658 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 608-137 chr6 164240428 164240635 + 4 NA Intergenic Intergenic -569047 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 687-55 chr19 50285937 50286332 + 4 NA intron (NM_024729, intron 31 of 40) L1MEf|LINE|L1 43243 NM_004977 3748 Hs.467146 NM_004977 ENSG00000131398 KCNC3 KSHIIID|KV3.3|SCA13 potassium voltage-gated channel subfamily C member 3 protein-coding 866-49 chr7 109132467 109132791 + 4 NA Intergenic L1MEf|LINE|L1 -248042 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 620-66 chr2 113001167 113001467 + 4 NA Intergenic L1MEg|LINE|L1 -4142 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 960-4 chr11 71177891 71178305 + 4 NA intron (NM_012309, intron 1 of 24) L1MB4|LINE|L1 46698 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 769-8 chr11 82652391 82652876 + 4 NA Intergenic HAL1|LINE|L1 81231 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 540-211 chr8 106399997 106400263 + 4 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -47794 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 417-164 chr20 24378430 24378577 + 4 NA Intergenic (TATGTG)n|Simple_repeat|Simple_repeat -90696 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 1040-3 chr11 45620541 45620996 + 4 NA Intergenic MER52A|LTR|ERV1 44854 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 298-385 chr5 162684378 162684522 + 4 NA Intergenic Intergenic 616808 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 436-151 chr2 209835375 209835518 + 4 NA intron (NM_032504, intron 18 of 63) intron (NM_032504, intron 18 of 63) 63453 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 406-255 chr6 27457871 27458069 + 4 NA intron (NR_144688, intron 3 of 8) L1M5|LINE|L1 14928 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 701-33 chr17 55655895 55656248 + 4 NA Intergenic Intergenic 66793 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 724-6 chr10 60461684 60461879 + 4 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -71906 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 1396-8 chr21 22587778 22588337 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie 489440 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 193-94 chr2 12550748 12550829 + 4 NA intron (NR_110196, intron 4 of 5) MIR|SINE|MIR -166084 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 468-70 chr13 95654708 95654864 + 4 NA Intergenic L1ME3|LINE|L1 -10080 NM_198968 22873 Hs.656580 NM_014934 ENSG00000134874 DZIP1 DZIP|DZIPt1 DAZ interacting zinc finger protein 1 protein-coding 896-30 chr6 52160584 52161041 + 4 NA Intergenic L1ME5|LINE|L1 -9789 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 1489-5 chr8 127589131 127589781 + 4 NA Intergenic Intergenic -107317 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 718-24 chr14 71797607 71797891 + 4 NA Intergenic L1MC3|LINE|L1 -134422 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 618-76 chr21 22339315 22339645 + 4 NA Intergenic Intergenic 240863 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 745-5 chr10 44528793 44529077 + 4 NA Intergenic L1MB5|LINE|L1 -143838 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 786-14 chr11 111902150 111902470 + 4 NA Intergenic L2|LINE|L2 8429 NM_001368246 1410 Hs.53454 NM_001885 ENSG00000109846 CRYAB CMD1II|CRYA2|CTPP2|CTRCT16|HEL-S-101|HSPB5|MFM2 crystallin alpha B protein-coding 725-58 chr8 81906342 81906590 + 4 NA Intergenic L2c|LINE|L2 -64180 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 974-12 chr20 59795084 59795643 + 4 NA intron (NM_080672, intron 7 of 12) L1M2|LINE|L1 74153 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 862-37 chr9 80342584 80342918 + 4 NA Intergenic L1MA4|LINE|L1 367728 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 772-29 chr2 78743974 78744265 + 4 NA Intergenic Intergenic 198588 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 454-202 chr3 51079472 51079626 + 4 NA intron (NM_004947, intron 7 of 52) AluJb|SINE|Alu -305742 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 606-28 chr11 16073838 16074033 + 4 NA intron (NM_017508, intron 8 of 14) L1PA15|LINE|L1 -104314 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 799-15 chr15 26996084 26996451 + 4 NA intron (NM_001270873, intron 2 of 5) L1M4b|LINE|L1 25086 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 720-87 chr7 106864043 106864249 + 4 NA Intergenic Intergenic -1136 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 724-38 chr2 147558813 147559025 + 4 NA Intergenic Intergenic -285598 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 1283 chr14 72762461 72763054 + 4 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 129892 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 782-28 chr19 24344633 24345035 + 4 NA Intergenic ALR/Alpha|Satellite|centr -181387 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1022-19 chr7 3079593 3080127 + 4 NA Intergenic AluJb|SINE|Alu -35993 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 450-309 chr8 120028056 120028232 + 4 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -96958 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 926-4 chr10 9727140 9727544 + 4 NA Intergenic Intergenic -331380 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 726-27 chr14 42785636 42785831 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR 1178877 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 871-6 chr13 56675009 56675442 + 4 NA Intergenic Intergenic -465693 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 600-68 chr2 101745511 101745721 + 4 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 47909 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 870-34 chr5 102124642 102124879 + 4 NA Intergenic L1MCa|LINE|L1 171524 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 417-282 chr8 83194915 83195130 + 4 NA Intergenic Intergenic -208736 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 748-54 chr20 19093041 19093397 + 4 NA Intergenic MER5B|DNA|hAT-Charlie -119423 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 750-4 chr1 225093173 225093500 + 4 NA intron (NM_001367479, intron 21 of 85) L1PA15|LINE|L1 163661 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 764-66 chr7 89811661 89811921 + 4 NA Intergenic Intergenic -307609 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 709-72 chr5 13842882 13843185 + 4 NA intron (NM_001369, intron 32 of 78) intron (NM_001369, intron 32 of 78) 101447 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 1094-12 chr7 4849897 4850459 + 4 NA intron (NM_018059, intron 2 of 14) intron (NM_018059, intron 2 of 14) 11852 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 929-16 chr19 36717306 36717661 + 4 NA intron (NM_152603, intron 4 of 4) intron (NM_152603, intron 4 of 4) 13802 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 862-16 chr16 61517557 61517809 + 4 NA Intergenic Intergenic -461917 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 597-96 chr3 185310832 185311122 + 4 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) 28016 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 678-5 chr10 3353066 3353289 + 4 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 34482 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 913-32 chr5 112561590 112562125 + 4 NA Intergenic MER4D1|LTR|ERV1 -66579 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 392-179 chr20 56235609 56235735 + 4 NA Intergenic Intergenic -13060 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 790-30 chr20 54914656 54915064 + 4 NA Intergenic Intergenic 439267 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 403-234 chr4 186530052 186530234 + 4 NA Intergenic Intergenic 25424 NM_005958 4543 Hs.243467 NM_005958 ENSG00000168412 MTNR1A MEL-1A-R|MT1 melatonin receptor 1A protein-coding 978-5 chr1 248192972 248193407 + 4 NA Intergenic L1PA10|LINE|L1 -9879 NM_001004689 127062 Hs.553581 NM_001004689 ENSG00000228198 OR2M3 OR1-54|OR2M3P|OR2M6|OST003 olfactory receptor family 2 subfamily M member 3 protein-coding 618-6 chr1 82158112 82158285 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR 355745 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 692-29 chr15 36147413 36147634 + 4 NA Intergenic L1MB3|LINE|L1 220667 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 785-28 chr2 174175803 174176229 + 4 NA intron (NM_001011708, intron 3 of 9) L1ME1|LINE|L1 72516 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 386-343 chr8 43240019 43240185 + 4 NA Intergenic SAR|Satellite|Satellite -52340 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 1477-8 chr5 118217406 118218032 + 4 NA intron (NR_104997, intron 2 of 2) L1MC2|LINE|L1 -64855 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 629-34 chr12 133100309 133100568 + 4 NA intron (NM_001300777, intron 4 of 4) AluJr|SINE|Alu 20235 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 649-89 chr5 105033991 105034305 + 4 NA Intergenic Intergenic -65326 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 731-76 chr8 128054971 128055240 + 4 NA intron (NR_003367, intron 5 of 8) MLT2D|LTR|ERVL 5953 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 291-396 chr7 8547389 8547520 + 4 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 113845 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 1398-6 chr2 129410290 129410964 + 4 NA Intergenic L1PA3|LINE|L1 -136736 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 1182-9 chr2 160815303 160815634 + 4 NA Intergenic Intergenic -321487 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 685-19 chr12 117745091 117745370 + 4 NA intron (NM_173598, intron 4 of 19) MIRc|SINE|MIR 223760 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 687-105 chr7 25375019 25375299 + 4 NA Intergenic L1MEg|LINE|L1 -146673 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 772-42 chr5 61763000 61763359 + 4 NA Intergenic L1ME1|LINE|L1 -27481 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 2084 chr8 136700656 136701555 + 4 NA intron (NR_147196, intron 2 of 5) MER3|DNA|hAT-Charlie 170307 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 676-114 chr8 136343422 136343676 + 4 NA Intergenic AluJb|SINE|Alu -187249 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 782-8 chr10 116277419 116277771 + 4 NA Intergenic L2c|LINE|L2 -3950 NM_001145453 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 838-6 chr10 85354037 85354356 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 78576 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 972-19 chr5 14058878 14059337 + 4 NA Intergenic Intergenic -84235 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 821-4 chr1 233798247 233798634 + 4 NA Intergenic Intergenic -106236 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 842-42 chr5 153936918 153937371 + 4 NA Intergenic LTR1F|LTR|ERV1 -38157 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 655-29 chr12 64349239 64349535 + 4 NA intron (NM_001099676, intron 2 of 10) L1PB1|LINE|L1 41371 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 856-27 chr20 14247896 14248235 + 4 NA intron (NM_001351663, intron 3 of 17) Tigger4|DNA|TcMar-Tigger 89547 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 280-283 chr4 51934709 51934817 + 4 NA Intergenic L1MCc|LINE|L1 85600 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 285-463 chr9 118039106 118039244 + 4 NA Intergenic Intergenic 334772 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 1255 chr10 41786541 41787290 + 4 NA Intergenic ALR/Alpha|Satellite|centr 581130 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 708-43 chr3 27050843 27051186 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR 165509 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 1208-18 chr8 138002666 138003074 + 4 NA intron (NR_161374, intron 2 of 7) L1ME1|LINE|L1 80675 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 664-93 chr6 27198834 27199039 + 4 NA Intergenic L1MD|LINE|L1 -48765 NM_005865 10279 Hs.274407 NM_005865 ENSG00000112812 PRSS16 TSSP serine protease 16 protein-coding 732-49 chr2 211233324 211233741 + 4 NA Intergenic MIRb|SINE|MIR 615961 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 906-16 chr12 91904389 91904655 + 4 NA Intergenic Intergenic 237191 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 584-31 chr11 115449937 115450100 + 4 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 53262 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 539-182 chr6 119457342 119457574 + 4 NA intron (NR_046100, intron 3 of 5) intron (NR_046100, intron 3 of 5) 33844 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 659-136 chrX 126145866 126146127 + 4 NA Intergenic L1PA10|LINE|L1 20293 NM_001013628 340578 Hs.181867 NM_001013628 ENSG00000198354 DCAF12L2 WDR40C DDB1 and CUL4 associated factor 12 like 2 protein-coding 554-77 chr14 73088387 73088604 + 4 NA intron (NM_021239, intron 6 of 18) intron (NM_021239, intron 6 of 18) 29961 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 551-97 chr2 134548204 134548400 + 4 NA intron (NM_030923, intron 4 of 7) MER33|DNA|hAT-Charlie 170698 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 1078-4 chr17 73650912 73651331 + 4 NA Intergenic L2a|LINE|L2 -6676 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 921-32 chrX 155449911 155450407 + 4 NA Intergenic AluJb|SINE|Alu -7358 NR_036260 100422977 NR_036260 ENSG00000221603 MIR1184-3 - microRNA 1184-3 ncRNA 694-20 chr10 124274095 124274438 + 4 NA Intergenic L1ME1|LINE|L1 144657 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 515-159 chr3 41720680 41720896 + 4 NA intron (NR_136342, intron 21 of 34) L1MC5a|LINE|L1 241315 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 1030-18 chr4 49103934 49104571 + 4 NA Intergenic (CATTC)n|Satellite|Satellite 117610 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1374 chr10 77204333 77204812 + 4 NA intron (NM_001271519, intron 3 of 28) LTR26|LTR|ERV1 63741 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 1165-4 chr12 132925786 132926211 + 4 NA exon (NM_183238, exon 5 of 5) exon (NM_183238, exon 5 of 5) 30308 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 1500-5 chr15 61868549 61869151 + 4 NA intron (NM_001018088, intron 80 of 81) intron (NM_001018088, intron 80 of 81) 138932 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 849-46 chr8 104663204 104663674 + 4 NA Intergenic MIRb|SINE|MIR -74415 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 654-89 chr4 106011476 106011690 + 4 NA intron (NR_125928, intron 3 of 3) L1PB1|LINE|L1 10895 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 652-14 chr10 19821625 19821999 + 4 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 5380 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 695-56 chr20 12175874 12176177 + 4 NA Intergenic Intergenic 258132 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 451-4 chr1 18263916 18264080 + 4 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 156200 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 467-201 chr4 45447445 45447661 + 4 NA Intergenic Intergenic 676501 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 360-38 chr10 56202645 56202772 + 4 NA Intergenic L1PA5|LINE|L1 158551 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 841-37 chr6 170070394 170070789 + 4 NA Intergenic L1MD|LINE|L1 -90051 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 1047-20 chr7 21646197 21646802 + 4 NA intron (NM_001277115, intron 28 of 81) L1ME3|LINE|L1 103460 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 1029-6 chr14 85016004 85016334 + 4 NA Intergenic Intergenic -255763 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 772-54 chr8 84869785 84870133 + 4 NA intron (NM_001287244, intron 5 of 7) intron (NM_001287244, intron 5 of 7) 164032 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 468-156 chr2 124458803 124458965 + 4 NA intron (NM_130773, intron 6 of 23) L1ME4b|LINE|L1 433597 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 302-473 chr8 133733793 133733904 + 4 NA Intergenic MER96B|DNA|hAT-Tip100 43504 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 469-257 chr7 5187570 5187854 + 4 NA Intergenic Intergenic -2521 NM_001033519 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 582-55 chr17 72491164 72491419 + 4 NA intron (NR_036488, intron 1 of 3) MLT1N2|LTR|ERVL-MaLR 101513 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 923-18 chr3 167663537 167664029 + 4 NA Intergenic Intergenic -5860 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 1025-18 chr6 160575027 160575636 + 4 NA intron (NM_005577, intron 28 of 38) L1MEc|LINE|L1 -64207 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 622-134 chr7 119045073 119045356 + 4 NA Intergenic Tigger3|DNA|TcMar-Tigger 820510 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 976-25 chr9 87897729 87898111 + 4 NA intron (NR_149022, intron 3 of 3) L1M4c|LINE|L1 15043 NM_178828 286234 Hs.130672 NM_178828 ENSG00000177992 SPATA31E1 C9orf79|FAM75E1 SPATA31 subfamily E member 1 protein-coding 669-122 chr9 98527742 98528051 + 4 NA intron (NM_005458, intron 3 of 18) intron (NM_005458, intron 3 of 18) 181039 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 915-22 chr4 117491300 117491728 + 4 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 63116 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 533-118 chr20 12202294 12202574 + 4 NA Intergenic Intergenic 284541 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 752-2 chr1 57839883 57840250 + 4 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -20515 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 641-83 chr4 45849633 45849913 + 4 NA Intergenic AluJo|SINE|Alu 274281 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 990-18 chr4 30681416 30681818 + 4 NA Intergenic MIRb|SINE|MIR -38752 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 480-223 chr4 142051987 142052141 + 4 NA intron (NM_001331040, intron 25 of 25) intron (NM_001331040, intron 25 of 25) 415481 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 436-14 chr1 101181015 101181159 + 4 NA Intergenic MamTip1|DNA|hAT-Tip100 55441 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 458-91 chr15 94432320 94432478 + 4 NA intron (NM_001159643, intron 16 of 19) intron (NM_001159643, intron 16 of 19) 76469 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 346-255 chr2 133065619 133065807 + 4 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 150156 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 842-41 chr5 152980067 152980388 + 4 NA Intergenic HAL1|LINE|L1 -7878 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 608-54 chr17 70186748 70186982 + 4 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat 17330 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 711-77 chrX 64004953 64005303 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR 200580 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 789-19 chr15 85445774 85446271 + 4 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 65419 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 943-20 chr4 147075473 147075794 + 4 NA Intergenic Intergenic -129747 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 750-26 chr18 22562783 22563042 + 4 NA Intergenic Intergenic -144997 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 415-240 chr6 92439718 92439886 + 4 NA Intergenic MIR|SINE|MIR -749374 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 811-41 chr5 169201717 169202109 + 4 NA intron (NM_003062, intron 3 of 35) intron (NM_003062, intron 3 of 35) 61781 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 606-110 chr4 18539001 18539293 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -517272 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 670-114 chr7 93379606 93379856 + 4 NA Intergenic Intergenic 103124 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 982-11 chr12 80108539 80109193 + 4 NA intron (NM_001368062, intron 1 of 62) (AT)n|Simple_repeat|Simple_repeat 9329 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 822-2 chr1 65927227 65927539 + 4 NA intron (NM_002600, intron 3 of 16) L1MCa|LINE|L1 14138 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 732-38 chr18 41343193 41343456 + 4 NA Intergenic Intergenic 177353 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 813-3 chr1 209007039 209007458 + 4 NA Intergenic Intergenic 34794 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 521-116 chr2 17534544 17534737 + 4 NA Intergenic Intergenic -4226 NM_001321233 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 611-119 chr5 94253885 94254145 + 4 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -142316 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 1145-4 chr2 59559445 59559872 + 4 NA Intergenic MIR|SINE|MIR 341950 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 751-31 chr2 5837936 5838213 + 4 NA Intergenic Intergenic -25478 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 693-83 chr5 124069664 124069879 + 4 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 368749 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 899-25 chr6 51686960 51687439 + 4 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 65329 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 632-46 chr19 36732564 36732802 + 4 NA Intergenic L1MA2|LINE|L1 29002 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 768-57 chr9 93702562 93702986 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 107933 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 610-138 chr5 51861437 51861624 + 4 NA Intergenic Intergenic -146501 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 724-18 chr15 26848878 26849216 + 4 NA Intergenic L2a|LINE|L2 -18015 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 1231-6 chr6 46537918 46538439 + 4 NA Intergenic MIR|SINE|MIR -46111 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 882-21 chr2 18122437 18122946 + 4 NA Intergenic MIRb|SINE|MIR 244024 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 1132-9 chr3 185236480 185236971 + 4 NA intron (NM_001966, intron 2 of 6) intron (NM_001966, intron 2 of 6) 16547 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 712-37 chr18 71982572 71982854 + 4 NA Intergenic Intergenic -200487 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 777-23 chr14 74048166 74048512 + 4 NA intron (NM_025057, intron 7 of 11) intron (NM_025057, intron 7 of 11) 28990 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 527-275 chr8 135721540 135721773 + 4 NA Intergenic L1MD3|LINE|L1 264200 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1009-7 chr15 69247146 69247650 + 4 NA intron (NM_001324092, intron 2 of 3) Tigger1|DNA|TcMar-Tigger -51514 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 645-77 chr3 30994170 30994454 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -99651 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 854-23 chr2 104769502 104769741 + 4 NA Intergenic Intergenic -11902 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 870-8 chr15 89722346 89722673 + 4 NA intron (NM_001284395, intron 8 of 16) L2c|LINE|L2 28800 NM_018670 55897 Hs.447531 NM_018670 ENSG00000166823 MESP1 bHLHc5 mesoderm posterior bHLH transcription factor 1 protein-coding 676-92 chr4 163726806 163727111 + 4 NA intron (NM_001166373, intron 3 of 7) L1MC1|LINE|L1 -113424 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 567-70 chr17 52671551 52671864 + 4 NA Intergenic Intergenic -190414 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 480-184 chr22 45481750 45481913 + 4 NA Intergenic AluSx1|SINE|Alu -21052 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 954-9 chr12 25465641 25466202 + 4 NA Intergenic L1PA4|LINE|L1 87362 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 502-120 chr18 47610540 47610866 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 230207 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 844-55 chr5 86920653 86921012 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 174014 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 449-217 chr5 106682409 106682581 + 4 NA Intergenic Intergenic 328519 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 651-86 chr3 192026523 192026753 + 4 NA Intergenic Intergenic -211992 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 476-277 chr8 129226518 129226681 + 4 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 14641 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 809-11 chr14 59643857 59644231 + 4 NA intron (NM_021136, intron 3 of 8) L1MB7|LINE|L1 2976 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 897-27 chr3 96495203 96495641 + 4 NA Intergenic Intergenic 135458 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 737-72 chr5 152814481 152814861 + 4 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) 157678 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 775-57 chr3 34447482 34448051 + 4 NA Intergenic L1PA12|LINE|L1 649136 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 593-94 chr22 20617421 20617607 + 4 NA Intergenic AluSc8|SINE|Alu -72041 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 594-29 chr11 90746205 90746441 + 4 NA intron (NR_104190, intron 3 of 6) L1MB7|LINE|L1 122879 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 669-75 chr3 161009801 161010049 + 4 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 94807 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 627-80 chr4 89078252 89078595 + 4 NA Intergenic L1M4a2|LINE|L1 -21238 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 1508-2 chr14 76682031 76682864 + 4 NA Intergenic L1ME3F|LINE|L1 -79021 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 696-48 chr17 31625628 31625956 + 4 NA Intergenic L1ME3B|LINE|L1 50381 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 293-232 chr20 53298768 53298879 + 4 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 113540 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 536-211 chr7 35618092 35618270 + 4 NA Intergenic L1MEg|LINE|L1 76954 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 684-113 chr7 77993473 77993651 + 4 NA Intergenic Intergenic 153432 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 808-11 chr12 56820096 56820482 + 4 NA Intergenic L1ME3E|LINE|L1 56965 NM_003725 8630 Hs.524513 NM_003725 ENSG00000025423 HSD17B6 HSE|RODH|SDR9C6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding 652-123 chr8 144586936 144587209 + 4 NA intron (NM_025251, intron 1 of 10) THE1C|LTR|ERVL-MaLR 18623 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 691-74 chr6 67313534 67313841 + 4 NA Intergenic L1MA9|LINE|L1 -741664 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 678-58 chr20 5274974 5275246 + 4 NA Intergenic Intergenic 41622 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 1249-3 chr2 51434892 51435513 + 4 NA intron (NR_135237, intron 4 of 10) MADE1|DNA|TcMar-Mariner 402601 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 996-7 chr12 19717604 19717958 + 4 NA Intergenic Intergenic 277182 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 854-25 chr2 128987600 128987833 + 4 NA Intergenic Intergenic 123116 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 976-17 chr3 141223927 141224298 + 4 NA Intergenic Tigger3c|DNA|TcMar-Tigger -7713 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 565-171 chr7 71954352 71954514 + 4 NA intron (NM_001363460, intron 4 of 5) AluSx|SINE|Alu 382958 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 812-47 chr7 31019919 31020162 + 4 NA Intergenic Intergenic -32268 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 468-174 chr20 40021932 40022065 + 4 NA Intergenic (TATTAAT)n|Simple_repeat|Simple_repeat 17537 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 805-3 chr10 28422048 28422460 + 4 NA Intergenic L1ME3G|LINE|L1 73559 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 686-44 chr2 77085948 77086408 + 4 NA intron (NR_146416, intron 1 of 1) MIR|SINE|MIR 100213 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 357-476 chr9 26798742 26798852 + 4 NA Intergenic Intergenic 94005 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 460-100 chr16 73993954 73994197 + 4 NA Intergenic Intergenic 221446 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 650-60 chr2 151722479 151722654 + 4 NA intron (NM_001271208, intron 9 of 182) AluJr|SINE|Alu 11910 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 1024-2 chr1 95993538 95994113 + 4 NA intron (NR_125991, intron 2 of 4) Charlie1a|DNA|hAT-Charlie 1757 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 1918 chr7 4406862 4407913 + 4 NA Intergenic Intergenic -272550 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 1516-2 chr19 24336747 24337600 + 4 NA Intergenic ALR/Alpha|Satellite|centr -173726 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 516-266 chr9 26918459 26918715 + 4 NA intron (NM_001031689, intron 9 of 13) intron (NM_001031689, intron 9 of 13) -25759 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 559-117 chr3 7825962 7826128 + 4 NA Intergenic AluSx3|SINE|Alu 190262 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 674-81 chr5 170012002 170012191 + 4 NA intron (NR_156756, intron 33 of 52) MIR3|SINE|MIR -16392 NR_039609 100616498 NR_039609 ENSG00000263831 MIR378E mir-378e microRNA 378e ncRNA 902-26 chr22 19319281 19319751 + 4 NA Intergenic L1MC2|LINE|L1 -27797 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 713-70 chr5 146619477 146619711 + 4 NA intron (NM_181678, intron 8 of 10) MER102a|DNA|hAT-Charlie -103481 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 778-29 chr16 83014826 83015035 + 4 NA intron (NM_001220490, intron 2 of 12) L1MC4a|LINE|L1 -24632 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 1429 chr11 50448839 50449395 + 4 NA Intergenic ALR/Alpha|Satellite|centr 39970 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1998 chr12 24519974 24521075 + 4 NA intron (NM_152989, intron 1 of 17) L1MB1|LINE|L1 41967 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 589-8 chr1 220948947 220949228 + 4 NA Intergenic L1ME3A|LINE|L1 -68947 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 1364-3 chr2 12020954 12021571 + 4 NA intron (NR_110196, intron 2 of 5) LOR1a|LTR|ERV1 14146 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 1133-4 chr12 124065897 124066346 + 4 NA intron (NM_001347902, intron 2 of 4) L1ME4a|LINE|L1 92906 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 849-33 chr4 175109463 175109812 + 4 NA Intergenic L1M2|LINE|L1 191279 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 787-18 chr2 66817715 66818072 + 4 NA Intergenic Intergenic -86543 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 882-7 chr10 85173736 85174046 + 4 NA Intergenic Intergenic 25014 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 437-165 chr22 16982177 16982488 + 4 NA intron (NM_001037814, intron 3 of 9) L1M2|LINE|L1 25890 NM_001037814 128954 Hs.434113 NM_001037814 ENSG00000215568 GAB4 - GRB2 associated binding protein family member 4 protein-coding 844-73 chr9 10590460 10590965 + 4 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 22290 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 612-155 chrX 51236598 51236826 + 4 NA Intergenic L1M2|LINE|L1 -65291 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 698-34 chr19 36946076 36946412 + 4 NA intron (NM_001204839, intron 5 of 8) HAL1|LINE|L1 29912 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 601-46 chr16 10187181 10187352 + 4 NA Intergenic Intergenic -4358 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 657-62 chr3 43466432 43466689 + 4 NA intron (NM_001346464, intron 12 of 13) L1ME1|LINE|L1 -114598 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 1128-10 chr2 225984568 225985099 + 4 NA Intergenic L1MB7|LINE|L1 -157961 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 594-143 chr7 111137001 111137262 + 4 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 46004 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 774-86 chr8 112054904 112055166 + 4 NA Intergenic L1PA15|LINE|L1 -588458 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 511-215 chr5 141248135 141248398 + 4 NA 3' UTR (NM_018935, exon 1 of 1) 3' UTR (NM_018935, exon 1 of 1) 2871 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 710-88 chr7 82648467 82648751 + 4 NA Intergenic Intergenic -204653 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 541-103 chr19 43971824 43972047 + 4 NA Intergenic L1PA11|LINE|L1 -12235 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 584-177 chr8 142270506 142270701 + 4 NA 3' UTR (NM_001291931, exon 11 of 11) 3' UTR (NM_001291931, exon 11 of 11) 72247 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 616-109 chr3 88526709 88527016 + 4 NA Intergenic L1PA8A|LINE|L1 188406 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 466-285 chr8 136720453 136720626 + 4 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 189741 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 548-220 chr7 119110319 119110607 + 4 NA Intergenic L1MA1|LINE|L1 796912 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 743-44 chr2 153766503 153766854 + 4 NA Intergenic L1M3b|LINE|L1 -105244 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 508-90 chr19 29370662 29370872 + 4 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) 154985 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 1051-14 chr5 64485243 64485637 + 4 NA Intergenic L2c|LINE|L2 -20575 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 731-59 chr5 132979541 132979776 + 4 NA Intergenic MSTB1|LTR|ERVL-MaLR -16024 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 797-31 chr3 94760218 94760562 + 4 NA Intergenic LTR40a|LTR|ERVL -177873 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 693-90 chr6 133702127 133702452 + 4 NA intron (NR_109982, intron 4 of 8) L1ME3F|LINE|L1 -118858 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 518-147 chr2 158927723 158927964 + 4 NA Intergenic AluSp|SINE|Alu -40791 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 533-247 chr9 80999427 80999735 + 4 NA Intergenic Intergenic 689954 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 674-17 chr11 63067904 63068234 + 4 NA Intergenic Intergenic -52224 NM_001184736 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 796-15 chr13 79925873 79926131 + 4 NA Intergenic L1PA10|LINE|L1 53416 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 542-16 chr1 241704458 241704654 + 4 NA intron (NM_001367482, intron 8 of 27) intron (NM_001367482, intron 8 of 27) 52275 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 849-50 chr9 22376427 22376737 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -70242 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 1414-2 chr6 56171279 56172013 + 4 NA intron (NM_030820, intron 3 of 29) intron (NM_030820, intron 3 of 29) 75934 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 356-391 chr5 40177116 40177311 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 124922 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 1382-3 chr2 170910764 170911431 + 4 NA Intergenic L1MB5|LINE|L1 -17380 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 867-25 chr2 155792502 155792877 + 4 NA Intergenic L1ME2z|LINE|L1 462242 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 511-175 chr3 98970265 98970436 + 4 NA Intergenic Intergenic -68655 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 644-93 chr7 19574505 19574691 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 130838 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 517-192 chr4 57751988 57752219 + 4 NA Intergenic Intergenic 326231 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 534-20 chr1 231810427 231810695 + 4 NA intron (NM_001164544, intron 8 of 8) MER89|LTR|ERV1 7956 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 642-38 chr15 86219694 86219927 + 4 NA intron (NM_152336, intron 5 of 24) MIRb|SINE|MIR 97158 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 597-76 chr2 124661673 124661825 + 4 NA intron (NM_130773, intron 13 of 23) Tigger3b|DNA|TcMar-Tigger 636462 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 565-71 chr2 5316735 5316991 + 4 NA Intergenic MER5A|DNA|hAT-Charlie 374255 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 407-280 chr6 104417409 104417583 + 4 NA Intergenic Intergenic 442050 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 1937 chr8 142972557 142973296 + 4 NA Intergenic L1MB4|LINE|L1 -22902 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 1370-5 chr17 70617747 70618188 + 4 NA Intergenic MIRb|SINE|MIR 448432 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 866-51 chr7 117449763 117450143 + 4 NA Intergenic L1MA2|LINE|L1 -22460 NM_001301821 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 480-115 chr17 71034256 71034459 + 4 NA Intergenic Intergenic 167822 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 524-174 chr4 63925748 63925987 + 4 NA Intergenic Intergenic 483583 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 699-106 chr9 8270998 8271290 + 4 NA Intergenic L1MC1|LINE|L1 462802 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 658-19 chr10 84886498 84886818 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 312247 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 642-32 chr14 54092970 54093281 + 4 NA Intergenic L1MB8|LINE|L1 -136234 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 454-142 chr2 22832294 22832456 + 4 NA Intergenic Intergenic 295896 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 410-55 chr11 55055150 55055297 + 4 NA Intergenic ALR/Alpha|Satellite|centr -206932 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 630-21 chr12 66309091 66309281 + 4 NA intron (NM_001370285, intron 3 of 12) HAL1|LINE|L1 6641 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 650-104 chr6 59272026 59272316 + 4 NA Intergenic ALR/Alpha|Satellite|centr -1310725 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 771-77 chr6 132015182 132015404 + 4 NA Intergenic L1MB3|LINE|L1 -63921 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 739-9 chr10 82166445 82166649 + 4 NA intron (NR_163251, intron 2 of 9) L1ME4b|LINE|L1 66373 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 853-48 chr9 137928918 137929226 + 4 NA intron (NM_001243812, intron 6 of 45) L1MB7|LINE|L1 17988 NR_132977 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 652-97 chr5 87852571 87852876 + 4 NA Intergenic Intergenic 190681 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 704-67 chr5 43821981 43822198 + 4 NA Intergenic L1MA4A|LINE|L1 -218859 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 651-3 chr1 70016045 70016273 + 4 NA intron (NM_001370785, intron 13 of 26) L2a|LINE|L2 96837 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 722-74 chr8 48247373 48247646 + 4 NA Intergenic HERVK9-int|LTR|ERVK 239078 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 822-50 chr6 41349004 41349438 + 4 NA intron (NM_001199510, intron 5 of 5) MER21C|LTR|ERVL 13613 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 587-8 chr1 165265961 165266193 + 4 NA intron (NM_177398, intron 3 of 8) L2a|LINE|L2 90164 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 1089-5 chr2 102147892 102148456 + 4 NA intron (NM_000877, intron 1 of 11) intron (NM_000877, intron 1 of 11) 5428 NM_000877 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 485-199 chr4 33138182 33138390 + 4 NA Intergenic LTR79|LTR|ERVL 787248 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 720-88 chr8 89181883 89182220 + 4 NA Intergenic Intergenic 575660 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 875-17 chr2 101923391 101923853 + 4 NA Intergenic L1ME4a|LINE|L1 -59843 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 596-9 chr1 118371474 118371686 + 4 NA Intergenic L1MB7|LINE|L1 -186352 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 1036-12 chr2 16066262 16066773 + 4 NA intron (NR_126559, intron 1 of 3) intron (NR_126559, intron 1 of 3) 16090 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 740-70 chr7 31666077 31666342 + 4 NA Intergenic Intergenic -20808 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 1401-5 chr5 4561601 4562274 + 4 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat -211544 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 704-93 chrX 152592160 152592580 + 4 NA Intergenic Intergenic -45525 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 824-31 chr4 36706734 36707091 + 4 NA Intergenic Intergenic -65012 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 584-99 chr3 38801385 38801583 + 4 NA Intergenic MIRc|SINE|MIR -7474 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 791-19 chr13 104352883 104353178 + 4 NA Intergenic Intergenic 927830 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 1410-4 chr8 140073232 140073908 + 4 NA intron (NM_001160372, intron 17 of 22) L1ME2z|LINE|L1 26965 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 605-133 chr9 109168768 109169016 + 4 NA Intergenic (TTTCT)n|Simple_repeat|Simple_repeat -1601 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 781-11 chr12 21951512 21951842 + 4 NA Intergenic L1MA9|LINE|L1 -14983 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 2229 chr2 101672488 101673497 + 4 NA Intergenic L1M6|LINE|L1 -24711 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 668-99 chr7 104747171 104747347 + 4 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 56833 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 678-61 chr21 23830000 23830359 + 4 NA Intergenic Intergenic -445344 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 683-52 chr3 34460035 34460225 + 4 NA Intergenic L1M2|LINE|L1 661500 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 419-179 chr3 38746141 38746354 + 4 NA intron (NM_006514, intron 12 of 26) L2a|LINE|L2 47763 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 400-344 chr8 105183623 105183815 + 4 NA Intergenic L1PA16|LINE|L1 -134719 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 566-40 chr12 116553499 116553680 + 4 NA Intergenic L1MB5|LINE|L1 -5792 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 1330-2 chr19 46088198 46088752 + 4 NA Intergenic Intergenic -10846 NR_163177 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 411-46 chr10 128446712 128446929 + 4 NA Intergenic L1M5|LINE|L1 160870 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 754-45 chr2 227322284 227322682 + 4 NA intron (NR_102371, intron 1 of 13) MER4E|LTR|ERV1 2681 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 666-35 chr16 7285892 7286083 + 4 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -46858 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 840-5 chr10 25093870 25094345 + 4 NA Intergenic L1MA2|LINE|L1 -18951 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 810-41 chr5 25484022 25484288 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 293202 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 1052-9 chr15 46016442 46017040 + 4 NA Intergenic MIRb|SINE|MIR 311546 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 648-102 chr4 90325024 90325298 + 4 NA intron (NM_207491, intron 3 of 7) L1PA3|LINE|L1 90130 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 881-38 chr7 90701045 90701641 + 4 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) -8055 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 604-81 chr2 80401146 80401422 + 4 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 87905 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 664-103 chr7 8381612 8381954 + 4 NA Intergenic Intergenic -51826 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 722-23 chr13 48714725 48715022 + 4 NA Intergenic Intergenic 60944 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 2118-2 chr7 42667398 42668321 + 4 NA intron (NR_110833, intron 2 of 2) HAL1|LINE|L1 38588 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 535-99 chr16 63825719 63825944 + 4 NA Intergenic HERV35I-int|LTR|ERV1 1296232 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 633-119 chr8 51369167 51369468 + 4 NA intron (NM_144651, intron 19 of 22) intron (NM_144651, intron 19 of 22) 440128 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 710-7 chr1 246979572 246979842 + 4 NA intron (NM_001204221, intron 4 of 5) intron (NM_001204221, intron 4 of 5) 28350 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 742-35 chr18 8572838 8573166 + 4 NA Intergenic Intergenic -36443 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 1173-10 chr3 75974963 75975393 + 4 NA Intergenic Intergenic -189629 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 737-33 chr17 76594122 76594465 + 4 NA Intergenic Intergenic -8433 NM_006456 10610 Hs.592105 NM_006456 ENSG00000070731 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 1161-7 chr3 190214381 190214819 + 4 NA Intergenic Intergenic -92163 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 736-85 chr8 59581768 59582119 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger 462733 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 608-66 chr19 56771960 56772264 + 4 NA intron (NR_110744, intron 1 of 3) intron (NR_110744, intron 1 of 3) 6790 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 770-75 chr9 113036348 113036647 + 4 NA Intergenic L1MEf|LINE|L1 20227 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 520-88 chr14 51997459 51997716 + 4 NA intron (NM_016039, intron 3 of 7) intron (NM_016039, intron 3 of 7) 8041 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 546-41 chr11 76267577 76267744 + 4 NA Intergenic MER63A|DNA|hAT-Blackjack -61158 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 1159-6 chr2 21099040 21099481 + 4 NA Intergenic Intergenic -24726 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 490-274 chr7 106917983 106918230 + 4 NA Intergenic Intergenic 52627 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 270-430 chr9 94229175 94229261 + 4 NA intron (NR_160773, intron 1 of 2) intron (NR_160773, intron 1 of 2) -24652 NR_046163 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 608-83 chr20 24454520 24454672 + 4 NA Intergenic Intergenic -14603 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 874-19 chr3 97468582 97469007 + 4 NA intron (NM_173655, intron 5 of 12) intron (NM_173655, intron 5 of 12) 29187 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 413-300 chr8 50047571 50047771 + 4 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -116460 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 584-79 chr2 114417953 114418203 + 4 NA Intergenic Charlie2a|DNA|hAT-Charlie -24563 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 760-35 chr2 146281997 146282265 + 4 NA Intergenic Intergenic -304926 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 728-14 chr11 79444253 79444546 + 4 NA Intergenic L1ME4a|LINE|L1 -3369 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 842-14 chr16 47796252 47796594 + 4 NA Intergenic L1MA9|LINE|L1 -62158 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 350-282 chr21 15693634 15693764 + 4 NA Intergenic Intergenic -36235 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 713-72 chr6 84660461 84660771 + 4 NA Intergenic Intergenic -28842 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 565-159 chr6 70726657 70726886 + 4 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 58241 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 1207-3 chr10 66423127 66423472 + 4 NA intron (NM_001127384, intron 11 of 17) L1MEd|LINE|L1 -502737 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 1186-16 chr5 64963224 64963881 + 4 NA intron (NM_005869, intron 11 of 13) intron (NM_005869, intron 11 of 13) 194622 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 619-73 chr2 206874587 206874815 + 4 NA Intergenic Intergenic -64817 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 646-89 chr3 134120581 134120895 + 4 NA Intergenic L1PB4|LINE|L1 -63090 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 514-195 chr3 187002247 187002459 + 4 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -19502 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 544-209 chr7 47071836 47072070 + 4 NA Intergenic L1M4a1|LINE|L1 -374831 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 474-224 chr4 189190908 189191090 + 4 NA Intergenic Intergenic 414342 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 744-56 chr5 61740034 61740309 + 4 NA Intergenic MIRb|SINE|MIR -4473 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 596-141 chr6 55290606 55290764 + 4 NA Intergenic Intergenic -36784 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 486-83 chr14 69597719 69598000 + 4 NA Intergenic MER45R|DNA|hAT-Tip100 -13737 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 667-84 chr5 27748020 27748222 + 4 NA Intergenic L1PA17|LINE|L1 275829 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 726-14 chr12 17309956 17310250 + 4 NA Intergenic Intergenic 278975 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 534-109 chr2 46679672 46679876 + 4 NA Intergenic Intergenic -19186 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 651-94 chr4 97689529 97689923 + 4 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 322800 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 532-23 chr10 80352407 80352586 + 4 NA non-coding (NR_070308, exon 2 of 6) non-coding (NR_070308, exon 2 of 6) 4259 NM_001370157 143241 Hs.407751 NM_138812 ENSG00000170788 DYDC1 DPY30D1 DPY30 domain containing 1 protein-coding 745-67 chr6 130533963 130534244 + 4 NA Intergenic MamGypsy2-I|LTR|Gypsy 96986 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 581-93 chr21 29697028 29697258 + 4 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -51032 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 1880-2 chr7 131254342 131255280 + 4 NA intron (NM_001145354, intron 2 of 18) L1M4b|LINE|L1 72968 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 813-50 chr8 86240056 86240423 + 4 NA Intergenic L1MC2|LINE|L1 -9858 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 727-18 chr12 15086944 15087244 + 4 NA Intergenic LTR54B|LTR|ERV1 -64829 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 676-77 chr3 8705815 8706117 + 4 NA Intergenic MIRc|SINE|MIR -27834 NM_033337 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|MPDT|RMD2|VIP-21|VIP21 caveolin 3 protein-coding 1025-11 chr2 108961842 108962274 + 4 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 27162 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 1091-6 chr3 19623345 19623834 + 4 NA Intergenic L1MEi|LINE|L1 -308658 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 450-167 chr20 16217674 16217829 + 4 NA Intergenic Charlie1|DNA|hAT-Charlie -231869 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 711-63 chr5 175151170 175151432 + 4 NA Intergenic MIRb|SINE|MIR -155570 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 775-18 chr11 82569638 82570067 + 4 NA Intergenic L1PB3|LINE|L1 164012 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 600-69 chr2 114032156 114032374 + 4 NA Intergenic Intergenic -52281 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 761-42 chr3 24783658 24783993 + 4 NA Intergenic Intergenic -45498 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 463-278 chr8 36361840 36362068 + 4 NA Intergenic L1MEd|LINE|L1 -422420 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 664-81 chr4 72924220 72924398 + 4 NA Intergenic L1M1|LINE|L1 145407 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 608-112 chr4 77560637 77560793 + 4 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 48962 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 1241 chr1 78056813 78057433 + 4 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 11157 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 759-9 chr10 51270553 51271002 + 4 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -28796 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 627-59 chr2 123839410 123839704 + 4 NA Intergenic L1PA16|LINE|L1 185617 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 195-57 chr13 42349983 42350049 + 4 NA Intergenic L2a|LINE|L2 -74876 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 540-129 chr20 9143397 9143597 + 4 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -73893 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 916-37 chr9 29468324 29468734 + 4 NA Intergenic L1MCc|LINE|L1 -254928 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 374-314 chr5 91786465 91786616 + 4 NA Intergenic L1M4|LINE|L1 -403223 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 561-95 chr2 59605124 59605367 + 4 NA Intergenic Intergenic 387537 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 612-63 chr2 81615778 81616019 + 4 NA Intergenic HAL1|LINE|L1 -148952 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 543-184 chr4 65451644 65451879 + 4 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 217727 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 765-17 chr13 85027691 85028078 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 120173 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 274-157 chr16 83053866 83054003 + 4 NA intron (NM_001220489, intron 3 of 12) Tigger3a|DNA|TcMar-Tigger -63636 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 688-26 chr11 88188443 88188709 + 4 NA Intergenic Intergenic 12074 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 1057-11 chr20 42013568 42014118 + 4 NA Intergenic Intergenic -395466 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 729-23 chr14 27722426 27722874 + 4 NA Intergenic Intergenic -49429 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 376-359 chr6 160335827 160335980 + 4 NA Intergenic Intergenic -12475 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 695-97 chr7 32133416 32133699 + 4 NA intron (NM_001322059, intron 3 of 17) L1MEf|LINE|L1 -62121 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1336-3 chr22 49279872 49280594 + 4 NA Intergenic L1M4|LINE|L1 263233 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 618-20 chr11 46967491 46967789 + 4 NA intron (NM_001278222, intron 1 of 7) MIR|SINE|MIR 30879 NM_001003677 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 656-126 chr8 102024328 102024606 + 4 NA intron (NM_001040630, intron 1 of 5) intron (NM_001040630, intron 1 of 5) 40035 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 854-43 chr9 34812140 34812637 + 4 NA Intergenic L1M4|LINE|L1 26198 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 1180-6 chr17 62005447 62006060 + 4 NA intron (NM_005121, intron 9 of 29) 7SLRNA|srpRNA|srpRNA 59525 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 1034-19 chr8 126630507 126631075 + 4 NA Intergenic Intergenic -72313 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 611-70 chr19 57958847 57959151 + 4 NA intron (NM_152474, intron 5 of 5) intron (NM_152474, intron 5 of 5) -11293 NM_005773 10172 Hs.596242 NM_005773 ENSG00000152454 ZNF256 BMZF-3|BMZF3 zinc finger protein 256 protein-coding 884-42 chr6 91197790 91198048 + 4 NA Intergenic Intergenic -323741 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 800-52 chr5 152094255 152094633 + 4 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 135546 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 644-31 chr18 10819284 10819585 + 4 NA intron (NM_022068, intron 7 of 51) intron (NM_022068, intron 7 of 51) -59785 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 492-66 chr12 86002984 86003156 + 4 NA intron (NM_001351291, intron 4 of 7) AluJo|SINE|Alu 128775 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 524-289 chrX 67811044 67811226 + 4 NA Intergenic L1MB4|LINE|L1 266512 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 646-97 chr4 185885489 185885748 + 4 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) 70754 NM_001270771 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 487-103 chr15 95898365 95898505 + 4 NA Intergenic Intergenic 229406 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 765-57 chr5 73388654 73389012 + 4 NA Intergenic Intergenic 50927 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 642-107 chr8 113784764 113784927 + 4 NA Intergenic Intergenic -347906 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 1171-7 chr18 4817580 4818156 + 4 NA Intergenic Intergenic -263314 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1186-12 chr2 126386653 126387276 + 4 NA Intergenic Intergenic -268971 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 561-186 chr7 80703293 80703735 + 4 NA Intergenic Intergenic 56861 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 659-109 chr7 69126761 69127058 + 4 NA Intergenic Intergenic 470715 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 718-61 chr4 35354472 35354697 + 4 NA Intergenic Intergenic 889355 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 577-104 chr2 236466482 236466676 + 4 NA intron (NR_073043, intron 5 of 19) MSTB|LTR|ERVL-MaLR 37118 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 646-24 chr11 100142635 100142809 + 4 NA intron (NM_001243270, intron 12 of 23) Tigger4|DNA|TcMar-Tigger -544566 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 629-62 chr2 71972609 71972911 + 4 NA Intergenic L1ME4a|LINE|L1 175102 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 672-116 chr8 137586055 137586287 + 4 NA Intergenic LTR8A|LTR|ERV1 -172583 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 2081 chr19 27630159 27631033 + 4 NA Intergenic ALR/Alpha|Satellite|centr -162835 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 687-84 chr4 24865004 24865298 + 4 NA intron (NM_001130726, intron 3 of 11) (AGAC)n|Simple_repeat|Simple_repeat 47827 NM_001330643 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 348-497 chr7 79789256 79789347 + 4 NA Intergenic Intergenic 335341 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 374-209 chr2 190778800 190778961 + 4 NA Intergenic L1MB4|LINE|L1 -101941 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 617-57 chr19 27903416 27903736 + 4 NA intron (NR_146735, intron 4 of 7) intron (NR_146735, intron 4 of 7) -109636 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 736-16 chr11 103653317 103653618 + 4 NA Intergenic L2c|LINE|L2 -196439 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 629-31 chr11 115046562 115046889 + 4 NA Intergenic Intergenic -286852 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 654-130 chr8 138682358 138682653 + 4 NA intron (NM_152888, intron 39 of 64) Kanga2_a|DNA|TcMar-Tc2 -184775 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 802-12 chr11 54867040 54867348 + 4 NA Intergenic ALR/Alpha|Satellite|centr 160362 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 810-43 chr5 45934726 45935033 + 4 NA Intergenic ALR/Alpha|Satellite|centr -238499 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1304-5 chr5 2495782 2496299 + 4 NA Intergenic Intergenic -183839 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 810-35 chr3 152793054 152793283 + 4 NA Intergenic Intergenic -41963 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 503-196 chr3 87613198 87613480 + 4 NA Intergenic HERVIP10F-int|LTR|ERV1 -179367 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 764-63 chr7 24723557 24723956 + 4 NA intron (NM_004403, intron 3 of 9) intron (NM_004403, intron 3 of 9) 33708 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 1204 chr10 109188415 109188862 + 4 NA Intergenic L1ME1|LINE|L1 734608 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 696-71 chr3 78029481 78029717 + 4 NA Intergenic Intergenic 19364 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 1645 chr13 51656580 51657261 + 4 NA intron (NM_052950, intron 1 of 11) L1M4|LINE|L1 72458 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 560-82 chr2 82407828 82408005 + 4 NA Intergenic Intergenic -448887 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 645-79 chr3 94556214 94556508 + 4 NA Intergenic L1PA16|LINE|L1 -381902 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 789-23 chr18 27844824 27845234 + 4 NA Intergenic L2b|LINE|L2 191612 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 432-233 chr5 137058301 137058449 + 4 NA intron (NM_004598, intron 6 of 10) MIRb|SINE|MIR -69822 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 578-57 chr14 60044897 60045099 + 4 NA intron (NR_075071, intron 29 of 32) L1M2|LINE|L1 -46913 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 825-16 chr2 21535270 21535649 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 175193 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 628-59 chr18 78273178 78273431 + 4 NA Intergenic L1ME3E|LINE|L1 -279577 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 431-185 chr3 115637734 115637869 + 4 NA intron (NM_002045, intron 1 of 2) L2|LINE|L2 14291 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 570-155 chr5 37852393 37852614 + 4 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 12065 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 725-34 chr2 78609057 78609384 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie 63689 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 916-26 chr5 83481039 83481479 + 4 NA intron (NM_001164098, intron 1 of 13) AluYc|SINE|Alu 9515 NM_004385 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 774-76 chr5 164125271 164125575 + 4 NA Intergenic Intergenic 341979 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 482-222 chr6 45823865 45824077 + 4 NA Intergenic Intergenic 113626 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 564-136 chr3 191996832 191996995 + 4 NA Intergenic Intergenic -241717 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 566-148 chr4 126111163 126111397 + 4 NA Intergenic L1MC3|LINE|L1 604021 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 717-62 chr4 46291769 46292099 + 4 NA intron (NM_001114175, intron 7 of 8) HERVL-int|LTR|ERVL 97445 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 601-98 chr3 136974755 136975014 + 4 NA intron (NM_144717, intron 1 of 6) L1MA4A|LINE|L1 16901 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 590-2 chr1 40603787 40603948 + 4 NA Intergenic Intergenic 61815 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 1396-6 chr2 89263925 89264473 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 321466 NR_160764 107985911 NR_160761 LOC107985911 - lymphocyte specific protein 1 pseudogene pseudo 886-16 chr2 52298330 52298677 + 4 NA intron (NR_135237, intron 7 of 10) Tigger1|DNA|TcMar-Tigger -72145 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 759-79 chrX 98152446 98152646 + 4 NA Intergenic L1MB1|LINE|L1 -588011 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 664-6 chr1 40466359 40466750 + 4 NA Intergenic L2a|LINE|L2 -10736 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 722-24 chr14 16095628 16095979 + 4 NA Intergenic SAR|Satellite|Satellite -2505314 NM_001013354 440153 Hs.534880 NM_001013354 ENSG00000257115 OR11H12 - olfactory receptor family 11 subfamily H member 12 protein-coding 733-50 chr3 27338833 27339169 + 4 NA intron (NM_152534, intron 6 of 38) L1M2|LINE|L1 30382 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 559-157 chr6 65577014 65577229 + 4 NA intron (NM_001292009, intron 2 of 43) L1MA8|LINE|L1 2683 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 607-131 chr6 160311744 160311977 + 4 NA Intergenic Tigger4a|DNA|TcMar-Tigger -36518 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 1080-5 chr12 7451745 7452415 + 4 NA Intergenic Intergenic -7895 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 1022-18 chr5 51947014 51947393 + 4 NA Intergenic L1MB7|LINE|L1 -60828 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 882-44 chr8 136251519 136251979 + 4 NA Intergenic L1MB7|LINE|L1 -279049 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 605-58 chr2 225382869 225383122 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -16715 NM_001371273 433-277 chr8 81576212 81576343 + 4 NA Intergenic Intergenic -44887 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 929-34 chr8 88908370 88908860 + 4 NA Intergenic L1MA6|LINE|L1 -581132 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 463-38 chr10 46531969 46532150 + 4 NA Intergenic L1ME1|LINE|L1 24012 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 835-9 chr11 74876644 74877019 + 4 NA intron (NM_001270381, intron 8 of 15) HUERS-P3-int|LTR|ERV1 72260 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 858-25 chr2 133894285 133894694 + 4 NA Intergenic Harlequin-int|LTR|ERV1 -225446 NM_001371457 661-64 chr3 70251943 70252216 + 4 NA intron (NM_001364676, intron 2 of 4) intron (NM_001364676, intron 2 of 4) 60559 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 573-160 chr6 1530791 1531009 + 4 NA Intergenic (TATTACT)n|Simple_repeat|Simple_repeat -74631 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 823-7 chr10 61079636 61079944 + 4 NA Intergenic Intergenic 63515 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 656-92 chr5 24676377 24676584 + 4 NA Intergenic Intergenic -31502 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 555-24 chr10 77951247 77951420 + 4 NA Intergenic HAL1|LINE|L1 24521 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 594-77 chr2 162529961 162530124 + 4 NA intron (NM_033272, intron 3 of 15) intron (NM_033272, intron 3 of 15) 185674 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 1095-10 chr7 4574676 4575265 + 4 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -107325 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 400-116 chr16 7061506 7061682 + 4 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -271251 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 433-49 chr11 81995236 81995410 + 4 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) -104487 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 953-5 chr12 31557078 31557431 + 4 NA intron (NM_001308339, intron 1 of 22) HAL1b|LINE|L1 -32669 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 646-45 chr17 27166823 27167036 + 4 NA Intergenic ALR/Alpha|Satellite|centr -77688 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 535-259 chr9 105734552 105734870 + 4 NA intron (NM_018112, intron 4 of 5) L1M2a|LINE|L1 40170 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 718-57 chr4 370215 370600 + 4 NA intron (NM_003441, intron 3 of 3) L1MB2|LINE|L1 20250 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 833-8 chr15 60270707 60271100 + 4 NA Intergenic L1PBa|LINE|L1 127083 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 1118-19 chr8 83957323 83957726 + 4 NA Intergenic Intergenic -225263 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 646-32 chr12 119494574 119494818 + 4 NA intron (NM_178499, intron 5 of 13) intron (NM_178499, intron 5 of 13) -99078 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 674-64 chr4 45328351 45328540 + 4 NA Intergenic Intergenic -601811 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 959-33 chr8 5747983 5748434 + 4 NA Intergenic Intergenic 658340 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 543-57 chr12 2523314 2523500 + 4 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 148813 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 2589 chr3 13902615 13903790 + 4 NA Intergenic Intergenic -23131 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 640-97 chr4 88449546 88449837 + 4 NA Intergenic HERV4_I-int|LTR|ERV1 -7428 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 556-230 chr8 117561745 117562006 + 4 NA Intergenic AluSz|SINE|Alu 41162 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 618-26 chr12 65021529 65021807 + 4 NA Intergenic Intergenic -29377 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 1199-16 chr8 138096637 138097152 + 4 NA Intergenic L1ME3A|LINE|L1 -13349 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 835-41 chr4 44164751 44165068 + 4 NA Intergenic Intergenic 147847 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 1177 chr1 164034511 164035118 + 4 NA Intergenic L1M4a2|LINE|L1 -524546 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 791-44 chr22 44558051 44558473 + 4 NA Intergenic AluSx1|SINE|Alu -11078 NR_028411 388910 Hs.332685 NM_001012986 ENSG00000187012 LINC00207 NCRNA00207 long intergenic non-protein coding RNA 207 ncRNA 664-119 chr8 129404517 129404702 + 4 NA intron (NR_130920, intron 1 of 3) L1ME3Cz|LINE|L1 79533 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 739-50 chr4 31479773 31480144 + 4 NA Intergenic Intergenic -26586 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 325-11 chr1 69359888 69360072 + 4 NA Intergenic MER51-int|LTR|ERV1 -73275 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 626-81 chr20 7529148 7529410 + 4 NA Intergenic L1P4a|LINE|L1 157671 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 810-7 chr11 50539556 50539934 + 4 NA Intergenic ALR/Alpha|Satellite|centr 130598 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 784-59 chr7 49922734 49923230 + 4 NA Intergenic L1MEg|LINE|L1 147649 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 1632 chr1 40462933 40463656 + 4 NA exon (NM_023070, exon 5 of 5) exon (NM_023070, exon 5 of 5) 12818 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 1283-3 chr3 53412405 53413018 + 4 NA Intergenic L1MEf|LINE|L1 -65168 NM_001290205 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 648-135 chr7 46397277 46397582 + 4 NA Intergenic Intergenic 299693 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 1071-12 chr3 96167667 96168100 + 4 NA Intergenic Intergenic -192081 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 666-67 chr20 2406198 2406513 + 4 NA intron (NM_198994, intron 9 of 12) AluJb|SINE|Alu 25454 NM_198994 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 635-81 chr4 63327997 63328257 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1081323 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 920-5 chr11 60324766 60325151 + 4 NA Intergenic L1MA9|LINE|L1 -9924 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 573-177 chr7 13910692 13910953 + 4 NA intron (NM_001163147, intron 8 of 11) intron (NM_001163147, intron 8 of 11) 75692 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 867-47 chrX 77113902 77114276 + 4 NA Intergenic L1PA12|LINE|L1 -99557 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 1030-17 chr3 84608419 84608863 + 4 NA Intergenic Intergenic 260934 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 674-33 chr15 100415726 100415920 + 4 NA intron (NR_120374, intron 3 of 4) L1PA8|LINE|L1 42884 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 781 chr1 66029750 66030124 + 4 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 20781 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 741-38 chr3 13805099 13805330 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger 74857 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 1102-2 chr11 56998200 56998818 + 4 NA Intergenic MER52-int|LTR|ERV1 9595 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 788-20 chr14 85402438 85402747 + 4 NA intron (NR_102738, intron 1 of 1) intron (NR_102738, intron 1 of 1) 8677 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 773-41 chr6 19968849 19969165 + 4 NA Intergenic Intergenic 131637 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 876-15 chr16 26861743 26862307 + 4 NA Intergenic Intergenic -204902 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 598-36 chr12 58507511 58507735 + 4 NA Intergenic Intergenic -84079 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 480-40 chr11 25465199 25465450 + 4 NA Intergenic L1M4c|LINE|L1 -723799 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 867-23 chr2 79641916 79642258 + 4 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 7272 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 727-57 chr4 45784090 45784368 + 4 NA Intergenic MLT2B3|LTR|ERVL 339825 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 472-98 chr15 33552068 33552309 + 4 NA intron (NM_001243996, intron 10 of 102) intron (NM_001243996, intron 10 of 102) 241221 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 959-26 chr4 29842427 29842761 + 4 NA Intergenic L1MEg|LINE|L1 628302 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 556-7 chr1 113357305 113357556 + 4 NA Intergenic Intergenic -33085 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 614-49 chr19 56464747 56464918 + 4 NA intron (NM_022103, intron 1 of 4) L2a|LINE|L2 12513 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 1503 chr11 81731086 81731758 + 4 NA Intergenic L1M1|LINE|L1 159414 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 525-164 chr3 96213120 96213282 + 4 NA Intergenic L1M5|LINE|L1 -146763 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 526-217 chr6 112759192 112759425 + 4 NA Intergenic L1ME1|LINE|L1 411978 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 1627 chr1 220951187 220952088 + 4 NA Intergenic L1MEg|LINE|L1 -71497 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 541-66 chr14 70184640 70184799 + 4 NA intron (NM_033262, intron 1 of 7) L2c|LINE|L2 -2389 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 1085-21 chr8 50964492 50964857 + 4 NA Intergenic Intergenic 800543 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 653-118 chr8 49362191 49362489 + 4 NA Intergenic L1MA4|LINE|L1 149840 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 809-30 chr22 34029084 34029459 + 4 NA Intergenic AluSg7|SINE|Alu -106383 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 878-18 chr15 97409181 97409640 + 4 NA intron (NR_120324, intron 3 of 4) intron (NR_120324, intron 3 of 4) 112401 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 846-47 chr6 40181049 40181503 + 4 NA Intergenic MER39|LTR|ERV1 174730 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 876-36 chr7 89646483 89646806 + 4 NA Intergenic Intergenic -472756 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 478-298 chr8 126625526 126625737 + 4 NA Intergenic MIRb|SINE|MIR -67153 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 1078-19 chrX 75846118 75846618 + 4 NA Intergenic L1PREC2|LINE|L1 -61114 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 661-65 chr3 74803941 74804227 + 4 NA Intergenic Intergenic -282944 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 740-47 chr2 233016193 233016560 + 4 NA TTS (NR_136325) TTS (NR_136325) -3120 NM_019850 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 595-150 chr7 33740487 33740740 + 4 NA Intergenic MER113|DNA|hAT-Charlie -164302 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 753-40 chr21 28660368 28660849 + 4 NA Intergenic L1M5|LINE|L1 121290 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 848-7 chr11 70921575 70921878 + 4 NA intron (NM_012309, intron 9 of 24) L1MEg|LINE|L1 -49358 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 944-20 chr5 16251641 16252180 + 4 NA Intergenic L1MEg|LINE|L1 71669 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 517-247 chr7 24633173 24633324 + 4 NA intron (NM_016447, intron 3 of 12) L1MCa|LINE|L1 59796 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 368-60 chr10 77082817 77082984 + 4 NA intron (NM_001271519, intron 12 of 28) intron (NM_001271519, intron 12 of 28) -57931 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 509-253 chr8 86198671 86198911 + 4 NA Intergenic Intergenic 31590 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 688-15 chr10 99529651 99529903 + 4 NA intron (NR_120618, intron 1 of 4) intron (NR_120618, intron 1 of 4) 1400 NR_120618 101927324 Hs.642588 NR_120618 ENSG00000257582 LINC01475 - long intergenic non-protein coding RNA 1475 ncRNA 396-296 chr5 137394546 137394657 + 4 NA intron (NM_004598, intron 2 of 10) L2c|LINE|L2 104725 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 715-78 chr6 62508519 62508855 + 4 NA Intergenic Intergenic -222460 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 742-58 chr4 37142989 37143310 + 4 NA Intergenic L1MA1|LINE|L1 98842 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 814-56 chr7 20919561 20920025 + 4 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 84362 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 596-97 chr2 114204091 114204354 + 4 NA Intergenic Intergenic -224238 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 609-106 chr5 95986245 95986490 + 4 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 24366 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 772-44 chr6 11757197 11757520 + 4 NA intron (NM_032744, intron 3 of 5) intron (NM_032744, intron 3 of 5) 21689 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 1120-6 chr19 53576789 53577388 + 4 NA exon (NM_018555, exon 7 of 7) exon (NM_018555, exon 7 of 7) 21781 NM_001079907 55422 Hs.185674 NM_018555 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 568-104 chr2 62251303 62251611 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie 35936 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 977-7 chr18 7532363 7532817 + 4 NA Intergenic L1M5|LINE|L1 -34726 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 643-105 chr6 102155621 102155840 + 4 NA Intergenic L1MA1|LINE|L1 756745 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 848-34 chr4 99291222 99291489 + 4 NA promoter-TSS (NM_000667) promoter-TSS (NM_000667) -370 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 560-185 chr8 84095547 84095800 + 4 NA Intergenic Intergenic -87114 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1598-2 chr14 72352880 72353790 + 4 NA intron (NM_001370288, intron 3 of 16) L1ME1|LINE|L1 -163485 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 765-47 chr4 77551537 77551947 + 4 NA intron (NM_006419, intron 1 of 4) L1PA15-16|LINE|L1 39989 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 614-16 chr11 21313142 21313305 + 4 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 643637 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 1030-6 chr10 108134838 108135180 + 4 NA Intergenic L1MC3|LINE|L1 -65716 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 656-142 chr9 109829980 109830164 + 4 NA intron (NM_053016, intron 1 of 6) MamRep137|DNA|TcMar-Tigger 49874 NM_007203 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 926-12 chr19 56422758 56423100 + 4 NA exon (NM_001159861, exon 5 of 5) exon (NM_001159861, exon 5 of 5) 18597 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 707-47 chr2 21845580 21845833 + 4 NA Intergenic Intergenic -135054 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 632-47 chr19 56885361 56885554 + 4 NA Intergenic Intergenic 44555 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 406-252 chr5 162858232 162858429 + 4 NA Intergenic L1MB8|LINE|L1 -579241 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 1039-18 chr5 144923761 144924296 + 4 NA Intergenic L1PA15|LINE|L1 718637 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 1243-5 chr2 36433370 36433927 + 4 NA intron (NM_016441, intron 2 of 16) MER5B|DNA|hAT-Charlie 77870 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 716-37 chr2 163240060 163240296 + 4 NA Intergenic L1M3e|LINE|L1 -401411 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 953-9 chr16 58353772 58354177 + 4 NA Intergenic L1MA4A|LINE|L1 -38497 NM_022770 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 457-135 chr2 239335242 239335469 + 4 NA intron (NM_006037, intron 2 of 26) L1ME3A|LINE|L1 16449 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 803-29 chr20 59114963 59115300 + 4 NA Intergenic L1MC5a|LINE|L1 -72285 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 624-109 chr6 66310537 66310696 + 4 NA Intergenic Intergenic 522737 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 627-115 chr8 31379467 31379778 + 4 NA Intergenic L1M4b|LINE|L1 -260130 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 563-130 chr3 192283992 192284313 + 4 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) 45522 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 289-351 chr4 172210067 172210212 + 4 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -396532 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 635-23 chr13 37846026 37846245 + 4 NA intron (NM_003306, intron 1 of 10) L1M3b|LINE|L1 24290 NM_001135956 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 604-136 chr5 156176447 156176692 + 4 NA Intergenic Intergenic -150188 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 1253 chr13 28267601 28268337 + 4 NA intron (NM_175854, intron 12 of 18) intron (NM_175854, intron 12 of 18) -128795 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 863-7 chr11 111142114 111142494 + 4 NA Intergenic Intergenic -44986 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 1936-2 chr9 27234150 27235031 + 4 NA Intergenic L1MA8|LINE|L1 48203 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 1240-4 chr5 3074761 3075469 + 4 NA Intergenic L1M6|LINE|L1 -102720 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 1056-24 chr9 135766624 135767068 + 4 NA intron (NM_001272003, intron 12 of 30) intron (NM_001272003, intron 12 of 30) 64661 NM_020822 57582 Hs.104950 NM_020822 ENSG00000107147 KCNT1 EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2 potassium sodium-activated channel subfamily T member 1 protein-coding 957-9 chr13 86524309 86524806 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -387363 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 644 chr1 38448750 38448934 + 4 NA Intergenic Intergenic -26354 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 1578-2 chr2 4390713 4391310 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR 265211 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 722-29 chr14 60709448 60709778 + 4 NA TTS (NM_017420) TTS (NM_017420) 14738 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 738-4 chr1 178756449 178756793 + 4 NA intron (NM_152663, intron 1 of 19) L1PA16|LINE|L1 31377 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 613-110 chr5 123684362 123684699 + 4 NA Intergenic MLT2D|LTR|ERVL 139113 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 563-113 chr22 27703787 27704100 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR 97813 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 1017 chr1 1194410 1194821 + 4 NA intron (NM_001130045, intron 13 of 15) L1MB8|LINE|L1 11977 NM_148902 8784 Hs.212680 NM_004195 ENSG00000186891 TNFRSF18 AITR|CD357|ENERGEN|GITR|GITR-D TNF receptor superfamily member 18 protein-coding 1001-11 chr3 24930161 24930750 + 4 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 101132 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 840-12 chr14 27466335 27466747 + 4 NA intron (NR_148991, intron 2 of 2) L1M3e|LINE|L1 -146047 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 768-33 chr22 19333819 19334032 + 4 NA intron (NM_003325, intron 24 of 24) L1M4c|LINE|L1 -42206 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 692-4 chr1 176274007 176274372 + 4 NA Intergenic Intergenic -66903 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 907-6 chr10 78883470 78883898 + 4 NA Intergenic L1ME1|LINE|L1 183764 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 706-12 chr11 97469631 97470056 + 4 NA Intergenic Intergenic 961418 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 763-37 chr21 28334032 28334343 + 4 NA Intergenic Intergenic -105520 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 809-33 chr3 123409417 123409636 + 4 NA intron (NM_183357, intron 1 of 20) intron (NM_183357, intron 1 of 20) 6816 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 1425 chr1 42515057 42515991 + 4 NA intron (NM_001355227, intron 6 of 18) MLT1A1|LTR|ERVL-MaLR -17496 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 602-79 chr21 24283437 24283652 + 4 NA Intergenic Intergenic 37833 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 520-102 chr15 95236929 95237359 + 4 NA Intergenic Intergenic 89956 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 704-38 chr2 16575376 16575691 + 4 NA intron (NM_030797, intron 3 of 11) THE1B|LTR|ERVL-MaLR 90301 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 815-22 chr18 43368190 43368557 + 4 NA Intergenic Intergenic -90883 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 786-36 chr20 59608392 59608720 + 4 NA intron (NM_080672, intron 1 of 12) intron (NM_080672, intron 1 of 12) 4016 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 520-286 chr7 119585667 119585883 + 4 NA Intergenic L1M4a2|LINE|L1 321600 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 637-18 chr10 128328312 128328513 + 4 NA Intergenic Intergenic 42462 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 731-24 chr13 74276876 74277288 + 4 NA Intergenic Intergenic 45638 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 1065-9 chr3 82838920 82839378 + 4 NA Intergenic Intergenic 853007 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 283-109 chr12 126852879 126852984 + 4 NA Intergenic L1MA9|LINE|L1 21759 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 558-32 chr11 47299262 47299535 + 4 NA intron (NM_130476, intron 22 of 32) L1M2a|LINE|L1 -27288 NR_120569 101928943 Hs.664956 NR_120568 ENSG00000256746 LOC101928943 - uncharacterized LOC101928943 ncRNA 543-197 chr5 26276568 26276865 + 4 NA Intergenic Intergenic 761870 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1480-4 chr8 83283666 83284401 + 4 NA Intergenic L1MB3|LINE|L1 -119725 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 927-19 chr5 179438625 179438983 + 4 NA Intergenic FordPrefect_a|DNA|hAT-Tip100 77907 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 702-94 chr7 62875575 62875915 + 4 NA Intergenic ALR/Alpha|Satellite|centr 428311 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 494-160 chr21 42354363 42354561 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -3468 NM_005423 7032 Hs.2979 NM_005423 ENSG00000160181 TFF2 SML1|SP trefoil factor 2 protein-coding 642-7 chr10 17909744 17910067 + 4 NA intron (NM_002438, intron 29 of 29) L4_A_Mam|LINE|RTE-X -41934 NM_001282734 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 958-10 chr14 38763234 38763733 + 4 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -119113 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 540-98 chr17 71913167 71913423 + 4 NA Intergenic L1MB7|LINE|L1 112684 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 640-80 chr3 59005473 59005750 + 4 NA intron (NR_147235, intron 4 of 6) intron (NR_147235, intron 4 of 6) 44414 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 598-28 chr11 79041822 79042033 + 4 NA intron (NM_001098816, intron 6 of 33) L2b|LINE|L2 360182 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 289-227 chr2 79544611 79544777 + 4 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 21511 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 669-46 chr19 20015255 20015506 + 4 NA intron (NM_001077349, intron 3 of 3) intron (NM_001077349, intron 3 of 3) 23875 NM_001077349 91120 Hs.306298 NM_033196 ENSG00000197124 ZNF682 BC39498_3 zinc finger protein 682 protein-coding 498-188 chr4 44443689 44443929 + 4 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 5000 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 916-33 chr6 65018156 65018489 + 4 NA intron (NM_001292009, intron 13 of 43) MLT1C|LTR|ERVL-MaLR -283096 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 498-125 chr2 95222214 95222416 + 4 NA Intergenic L1ME1|LINE|L1 -52134 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 736-42 chr2 181238561 181238876 + 4 NA intron (NR_130784, intron 2 of 4) L1MEc|LINE|L1 66934 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 293-362 chr6 21303547 21303695 + 4 NA Intergenic L1MB8|LINE|L1 208271 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 257-35 chr10 36491964 36492064 + 4 NA Intergenic Intergenic -633843 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 1127-7 chr8 84038808 84039425 + 4 NA Intergenic L1ME1|LINE|L1 -143671 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1062-14 chr3 96761119 96761540 + 4 NA Intergenic Intergenic -53265 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 760-44 chr21 32718344 32718559 + 4 NA intron (NM_203446, intron 2 of 32) intron (NM_203446, intron 2 of 32) 9470 NM_001160306 8867 Hs.473632 NM_003895 ENSG00000159082 SYNJ1 EIEE53|INPP5G|PARK20 synaptojanin 1 protein-coding 1241-6 chr3 13156619 13157111 + 4 NA Intergenic L2b|LINE|L2 -83436 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 538-155 chr3 112440375 112440629 + 4 NA Intergenic L1PA16|LINE|L1 58970 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 1208-16 chr5 66817768 66818174 + 4 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -10802 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 508-126 chr20 4465044 4465197 + 4 NA Intergenic Intergenic -215833 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 576-125 chr5 1906750 1907027 + 4 NA Intergenic L1MEf|LINE|L1 19557 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 1847 chr18 79896107 79896864 + 4 NA intron (NM_012283, intron 1 of 1) L1M4b|LINE|L1 32817 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 330-278 chr2 106303478 106303594 + 4 NA Intergenic L1MCa|LINE|L1 -66209 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 655-91 chr4 97343570 97343816 + 4 NA Intergenic Intergenic -23233 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 489-107 chr17 64341274 64341440 + 4 NA intron (NM_000442, intron 14 of 15) intron (NM_000442, intron 14 of 15) 49503 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 846-8 chr11 98186335 98186844 + 4 NA Intergenic LTR37-int|LTR|ERV1 -834360 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 425-89 chr14 76979800 76980049 + 4 NA Intergenic AluSq2|SINE|Alu 20286 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 612-98 chr4 24937275 24937587 + 4 NA intron (NM_173463, intron 1 of 12) MLT1I|LTR|ERVL-MaLR -24453 NM_001130726 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 1318-5 chr8 129390049 129390724 + 4 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 93756 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 482-85 chr15 92862854 92863041 + 4 NA Intergenic L1MEf|LINE|L1 -19896 NR_037600 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 627-4 chr1 192252063 192252242 + 4 NA Intergenic L1PA10|LINE|L1 -64840 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 1128-4 chr10 84896007 84896517 + 4 NA Intergenic L1M5|LINE|L1 302643 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 600-15 chr10 115011240 115011531 + 4 NA Intergenic Intergenic 16728 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 499-258 chr8 48483675 48483980 + 4 NA Intergenic L1MB7|LINE|L1 -67740 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 1403-3 chr21 29201273 29201963 + 4 NA intron (NR_027072, intron 1 of 1) L1M4|LINE|L1 8124 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 680-2 chr1 29377507 29377739 + 4 NA Intergenic L1MA4|LINE|L1 -27509 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 1040-12 chr2 118299203 118299842 + 4 NA Intergenic HAL1|LINE|L1 -113136 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 614-54 chr2 77119509 77119766 + 4 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 133672 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 911-23 chr6 55107459 55107994 + 4 NA intron (NM_001526, intron 1 of 7) intron (NM_001526, intron 1 of 7) 1266 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 1321-2 chr10 61329112 61329632 + 4 NA Intergenic L1MC1|LINE|L1 -123267 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 1013-19 chr8 123997088 123997461 + 4 NA intron (NM_001039112, intron 12 of 40) L1M1|LINE|L1 43508 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 1065-21 chrX 73879243 73879613 + 4 NA Intergenic L1PA15-16|LINE|L1 -26675 NR_001564 7503 Hs.529901 NR_001564 ENSG00000229807 XIST DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66 X inactive specific transcript ncRNA 746-33 chr19 56519259 56519532 + 4 NA intron (NM_001321768, intron 3 of 3) L2a|LINE|L2 11540 NM_001321768 57573 Hs.230188 NM_020813 ENSG00000196263 ZNF471 ERP1|Z1971 zinc finger protein 471 protein-coding 472-147 chr2 13852299 13852505 + 4 NA Intergenic L1M1|LINE|L1 548556 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 744-37 chr2 226435411 226435652 + 4 NA Intergenic Intergenic 223262 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 511-80 chr15 93674622 93674801 + 4 NA Intergenic Intergenic -181849 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 620-58 chr19 52111707 52111980 + 4 NA Intergenic Intergenic -16078 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 654-91 chr4 173625844 173626117 + 4 NA Intergenic L1M2|LINE|L1 95522 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 710-52 chr20 11202620 11202985 + 4 NA Intergenic L1MEd|LINE|L1 70581 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 658-47 chr15 70332278 70332610 + 4 NA Intergenic L1ME2|LINE|L1 173484 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 764-26 chr15 50087277 50087539 + 4 NA intron (NR_073597, intron 2 of 26) (TA)n|Simple_repeat|Simple_repeat 25971 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 622-37 chr16 48709797 48710036 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -99736 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 462-260 chr7 35028560 35028761 + 4 NA intron (NM_015283, intron 1 of 21) MER41B|LTR|ERV1 8825 NM_001366673 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 852 chr1 40333950 40334298 + 4 NA Intergenic AluSq2|SINE|Alu -16838 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 652-17 chr10 42388742 42388946 + 4 NA Intergenic HERVFH19-int|LTR|ERV1 -20799 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 777-7 chr10 44113438 44113929 + 4 NA Intergenic Intergenic -179067 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 1325 chr12 34450761 34451426 + 4 NA Intergenic ALR/Alpha|Satellite|centr 428597 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 426-96 chr16 60475693 60475899 + 4 NA Intergenic Intergenic -116003 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 580-86 chr2 125103899 125104165 + 4 NA Intergenic L1MC3|LINE|L1 1013953 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 817-38 chr3 163323336 163323714 + 4 NA Intergenic L1ME4c|LINE|L1 -20224 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 756-10 chr12 32577007 32577410 + 4 NA intron (NM_001370298, intron 3 of 16) Charlie30a|DNA|hAT-Charlie 42915 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 842-33 chr4 53028473 53028884 + 4 NA intron (NM_152540, intron 5 of 8) GA-rich|Low_complexity|Low_complexity 166361 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 476-51 chr11 81335696 81335918 + 4 NA Intergenic Intergenic 555029 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 648-107 chr5 24946056 24946346 + 4 NA Intergenic L1MA4A|LINE|L1 -105618 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 754-50 chr3 26136948 26137299 + 4 NA Intergenic Intergenic -263428 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 824-42 chr5 150934677 150935056 + 4 NA intron (NR_026867, intron 4 of 4) MSTD|LTR|ERVL-MaLR 11718 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 595-110 chr3 65334678 65334991 + 4 NA Intergenic Intergenic -558982 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 394-118 chr15 89028726 89028911 + 4 NA Intergenic AluJo|SINE|Alu -59638 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 540-114 chr2 86580313 86580482 + 4 NA intron (NM_001198954, intron 3 of 7) L1MDa|LINE|L1 -16954 NR_036454 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 771-45 chr2 190026720 190026979 + 4 NA Intergenic Intergenic 35880 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 492-96 chr15 33387813 33388009 + 4 NA intron (NM_001243996, intron 1 of 102) HAL1|LINE|L1 76944 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 694-109 chr6 52212877 52213200 + 4 NA Intergenic L2b|LINE|L2 26663 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 1001-17 chr6 122296078 122296522 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -103251 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 610 chr1 37097958 37098191 + 4 NA Intergenic L1ME4a|LINE|L1 -63489 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 1046-4 chr14 46535635 46536184 + 4 NA Intergenic Intergenic 64550 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 810-13 chr14 54089982 54090418 + 4 NA Intergenic Intergenic -133309 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 549-26 chr10 42516027 42516353 + 4 NA non-coding (NR_026777, exon 8 of 8) non-coding (NR_026777, exon 8 of 8) 36680 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 508-173 chr4 97748624 97748818 + 4 NA intron (NM_174952, intron 9 of 10) MER58B|DNA|hAT-Charlie 381795 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 299-282 chr3 80185532 80185619 + 4 NA Intergenic Intergenic -417577 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 597-83 chr20 42249177 42249442 + 4 NA intron (NM_007050, intron 13 of 30) intron (NM_007050, intron 13 of 30) -436174 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 670-20 chr11 41491333 41491614 + 4 NA Intergenic L1PB4|LINE|L1 -31821 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 750-13 chr12 55553404 55553722 + 4 NA Intergenic Intergenic 2336 NM_001005494 341418 Hs.495021 NM_001005494 ENSG00000179626 OR6C4 OR12-10 olfactory receptor family 6 subfamily C member 4 protein-coding 631-64 chr2 49081254 49081451 + 4 NA intron (NM_000145, intron 1 of 9) L1ME3Cz|LINE|L1 21749 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 651-4 chr1 97357039 97357303 + 4 NA intron (NM_000110, intron 16 of 22) L1MA7|LINE|L1 261248 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 975-21 chr8 78802709 78803136 + 4 NA intron (NM_001199886, intron 1 of 4) intron (NM_001199886, intron 1 of 4) 2541 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 678-39 chr17 54488405 54488663 + 4 NA Intergenic Intergenic -412157 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 955 chr1 182692926 182693506 + 4 NA Intergenic L1PA15|LINE|L1 -19646 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 763-27 chr2 17225654 17226154 + 4 NA Intergenic Intergenic 292536 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 562-177 chr5 61400808 61400975 + 4 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 68633 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 480-178 chr21 30445396 30445598 + 4 NA Intergenic MER58A|DNA|hAT-Charlie 5218 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 692-85 chr6 71553316 71553535 + 4 NA Intergenic L1PBa|LINE|L1 132398 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 1011-11 chr2 172200171 172200676 + 4 NA Intergenic Intergenic 97417 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 902-45 chrX 86592871 86593390 + 4 NA intron (NM_001139515, intron 3 of 11) L1MC2|LINE|L1 330162 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 1141-3 chr13 87797259 87797660 + 4 NA Intergenic Intergenic 13061 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 379-298 chr6 112628164 112628341 + 4 NA Intergenic Intergenic 280922 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 529-71 chr14 89193015 89193173 + 4 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 224139 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 978-18 chr7 64708890 64709346 + 4 NA 3' UTR (NM_001282359, exon 4 of 4) 3' UTR (NM_001282359, exon 4 of 4) 30054 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 571-102 chr3 26421344 26421679 + 4 NA Intergenic L2b|LINE|L2 -201295 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 971-11 chr19 29180266 29180601 + 4 NA Intergenic L1MEf|LINE|L1 32718 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 523-187 chr3 137739170 137739360 + 4 NA Intergenic Intergenic -25050 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 664-16 chr10 10510400 10510693 + 4 NA intron (NM_001326317, intron 1 of 14) L2a|LINE|L2 47996 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 456-135 chr18 29613115 29613276 + 4 NA Intergenic L1MB8|LINE|L1 -685715 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 561-172 chr5 163923636 163923805 + 4 NA Intergenic Intergenic 418101 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 694-123 chr7 54409593 54409882 + 4 NA Intergenic L1MA9|LINE|L1 79040 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 622-101 chr4 171901875 171902185 + 4 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -88423 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 370-183 chr17 69854087 69854241 + 4 NA intron (NR_109972, intron 4 of 4) Charlie7|DNA|hAT-Charlie -107543 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 703-78 chr6 53954475 53954675 + 4 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 24593 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 1635 chr12 26525117 26525827 + 4 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 307722 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 620-150 chr8 133669496 133669738 + 4 NA intron (NR_134462, intron 1 of 2) intron (NR_134462, intron 1 of 2) 14449 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 1653-2 chr22 48933635 48934489 + 4 NA Intergenic L1MB8|LINE|L1 67292 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 1395 chr11 12558644 12559653 + 4 NA Intergenic Intergenic -115273 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 594-15 chr10 57355284 57355676 + 4 NA Intergenic Intergenic -50921 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 714-54 chr4 96975214 96975549 + 4 NA Intergenic Intergenic -391545 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 958-16 chr19 37070342 37070705 + 4 NA Intergenic L1ME3D|LINE|L1 -7699 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 837-17 chr2 78419487 78419985 + 4 NA Intergenic L1MC3|LINE|L1 -125795 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 1345 chr10 78880175 78880784 + 4 NA Intergenic L1MD2|LINE|L1 186969 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 974-14 chr4 29070564 29070975 + 4 NA Intergenic L1MA6|LINE|L1 73985 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 614-35 chr15 67383300 67383567 + 4 NA intron (NM_001031715, intron 10 of 20) intron (NM_001031715, intron 10 of 20) -128235 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 581-143 chr5 150954850 150955105 + 4 NA Intergenic Intergenic -8393 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 1043-3 chr17 71533149 71533707 + 4 NA Intergenic Intergenic -331249 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 626-5 chr1 72944868 72945153 + 4 NA Intergenic Intergenic -361160 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 946-21 chr5 105364171 105364695 + 4 NA Intergenic L1MA4A|LINE|L1 264959 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 567-174 chr8 14740694 14740976 + 4 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 112675 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 533-78 chr17 58651637 58651863 + 4 NA intron (NM_031272, intron 2 of 31) intron (NM_031272, intron 2 of 31) 40305 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 514-90 chr14 66190809 66191123 + 4 NA Intergenic Intergenic -295405 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 916-22 chr4 42881032 42881356 + 4 NA Intergenic Intergenic -12072 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 609-148 chrX 85873486 85873728 + 4 NA intron (NM_001320959, intron 13 of 14) L1MB8|LINE|L1 30100 NR_029848 494323 NR_029848 ENSG00000199051 MIR361 MIRN361|hsa-mir-361|mir-361 microRNA 361 ncRNA 732-26 chr14 46086715 46086973 + 4 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 22685 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1476-5 chr6 40260619 40261366 + 4 NA Intergenic LTR33|LTR|ERVL 95014 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 744-63 chr7 32377146 32377509 + 4 NA intron (NM_001322059, intron 1 of 17) L2c|LINE|L2 50897 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 651-63 chr2 69223651 69223940 + 4 NA intron (NM_032208, intron 17 of 17) intron (NM_032208, intron 17 of 17) 120113 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 678 chr1 14380636 14380841 + 4 NA intron (NR_149058, intron 3 of 4) L1MA3|LINE|L1 39235 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 723-79 chr8 109167152 109167414 + 4 NA Intergenic Intergenic 80655 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 854-6 chr1 108061406 108061912 + 4 NA Intergenic Intergenic -96479 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 685-90 chr7 53635488 53635781 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR 176297 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1180-10 chr5 46283875 46284409 + 4 NA Intergenic ALR/Alpha|Satellite|centr -587762 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 763-29 chr2 75966988 75967279 + 4 NA Intergenic Intergenic -256218 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 1567-3 chr20 46503793 46504517 + 4 NA intron (NM_199441, intron 5 of 5) intron (NM_199441, intron 5 of 5) 9417 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 1362-2 chr11 50401432 50402195 + 4 NA Intergenic ALR/Alpha|Satellite|centr -7334 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1388-3 chr2 142878261 142878812 + 4 NA intron (NM_001032998, intron 1 of 11) intron (NM_001032998, intron 1 of 11) 872 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 567-71 chr17 58903924 58904170 + 4 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 148178 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 1166-7 chr9 81487585 81488255 + 4 NA Intergenic Intergenic 201615 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 759-17 chr12 48723462 48723770 + 4 NA Intergenic L1MCa|LINE|L1 -3819 NM_001351125 255411 Hs.404103 NM_001351123 ENSG00000257987 TEX49 LINC00935 testis expressed 49 protein-coding 582-159 chr8 127043828 127043985 + 4 NA Intergenic MIR|SINE|MIR 30752 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 734-5 chr1 166218869 166219157 + 4 NA Intergenic L1PB4|LINE|L1 -52258 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 1061-4 chr14 54148722 54149193 + 4 NA Intergenic L1PB3|LINE|L1 -192066 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 711-17 chr12 96804268 96804612 + 4 NA intron (NM_001306084, intron 63 of 67) L1PB4|LINE|L1 -102817 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 753-63 chr8 138456026 138456293 + 4 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 41102 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1073-18 chr9 96755287 96755725 + 4 NA 3' UTR (NM_014930, exon 6 of 6) 3' UTR (NM_014930, exon 6 of 6) 22581 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 934-21 chr3 156203294 156203705 + 4 NA intron (NM_003471, intron 1 of 13) MIR|SINE|MIR 24384 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 801-61 chr8 129221862 129222284 + 4 NA intron (NR_033916, intron 2 of 2) intron (NR_033916, intron 2 of 2) 19167 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 1853 chr14 72341198 72342237 + 4 NA intron (NM_001370288, intron 2 of 16) L2c|LINE|L2 -175103 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 696-66 chr21 28362588 28362914 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -134084 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 1448-2 chr16 62441989 62442778 + 4 NA Intergenic L1MB2|LINE|L1 -405945 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 647-86 chr6 103358751 103358996 + 4 NA Intergenic L1M2|LINE|L1 1500673 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 552-61 chr14 59978995 59979258 + 4 NA intron (NR_075071, intron 15 of 32) intron (NR_075071, intron 15 of 32) 59413 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 675-102 chr9 104202214 104202509 + 4 NA Intergenic Intergenic -67868 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 576-162 chr8 55286816 55286980 + 4 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 168423 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 710-19 chr11 50579301 50579525 + 4 NA Intergenic ALR/Alpha|Satellite|centr 170266 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 730-29 chr2 88142041 88142423 + 4 NA Intergenic L1MEc|LINE|L1 -14170 NM_001443 2168 Hs.380135 NM_001443 ENSG00000163586 FABP1 FABPL|L-FABP fatty acid binding protein 1 protein-coding 1172 chr1 99477467 99478096 + 4 NA intron (NR_125951, intron 2 of 2) L1PA16|LINE|L1 10023 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 651-69 chr2 150305610 150306009 + 4 NA Intergenic MIRc|SINE|MIR -48802 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 426-236 chr5 63149150 63149336 + 4 NA Intergenic MamGypLTR3|LTR|Gypsy 570424 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 444-204 chr5 115396183 115396314 + 4 NA Intergenic Intergenic -99594 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 861-40 chrX 67214761 67215151 + 4 NA Intergenic L1MA8|LINE|L1 -329065 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 1100-8 chr17 56437057 56437589 + 4 NA intron (NM_001370326, intron 8 of 20) intron (NM_001370326, intron 8 of 20) -156376 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 941-15 chr2 145421533 145422148 + 4 NA Intergenic L1MA9|LINE|L1 753873 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 859-39 chr8 142322487 142322943 + 4 NA intron (NM_001366903, intron 6 of 9) intron (NM_001366903, intron 6 of 9) 80467 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 510-34 chr10 109610900 109611114 + 4 NA Intergenic Intergenic 312239 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 537-222 chr6 146259491 146259670 + 4 NA intron (NM_001278065, intron 3 of 9) L1MB1|LINE|L1 230382 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 605-39 chr17 20305669 20305955 + 4 NA intron (NM_001033553, intron 13 of 14) intron (NM_001033553, intron 13 of 14) -15362 NR_023380 348254 Hs.462475 NR_023380 CCDC144CP CCDC144C coiled-coil domain containing 144C, pseudogene pseudo 712-28 chr14 71996316 71996646 + 4 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 62954 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 623-87 chr3 117112803 117113054 + 4 NA Intergenic Intergenic 191497 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 758-56 chr3 118244290 118244510 + 4 NA Intergenic L2c|LINE|L2 -397368 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 717-66 chr5 3398446 3398660 + 4 NA Intergenic Intergenic -54263 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 611-43 chr14 84102929 84103225 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -1168855 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 623-11 chr10 55855700 55855897 + 4 NA Intergenic Intergenic -227856 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 1134-2 chr10 37930895 37931442 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 44812 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 631-4 chr1 56749788 56750060 + 4 NA intron (NM_001004303, intron 9 of 19) intron (NM_001004303, intron 9 of 19) 69480 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 1451-3 chr3 36947458 36947999 + 4 NA Intergenic AluSx|SINE|Alu -2674 NM_001329998 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 512-102 chr17 61765119 61765375 + 4 NA intron (NM_032043, intron 14 of 19) intron (NM_032043, intron 14 of 19) 98312 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 654-72 chr20 19090348 19090659 + 4 NA Intergenic Intergenic -122139 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 1097-12 chr4 82709 83222 + 4 NA intron (NM_182524, intron 3 of 3) L1MB2|LINE|L1 29644 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 897-33 chr5 105363589 105364042 + 4 NA Intergenic L1MA4A|LINE|L1 264341 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 632-123 chr8 135113508 135113796 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR -120479 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1489-4 chr8 122890317 122890932 + 4 NA intron (NM_001362797, intron 3 of 4) L1MA5|LINE|L1 108969 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 879-19 chr21 27665110 27665453 + 4 NA Intergenic Intergenic -57098 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 582-27 chr12 42912476 42912761 + 4 NA Intergenic L2b|LINE|L2 220402 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 353-83 chr11 54791932 54792108 + 4 NA Intergenic ALR/Alpha|Satellite|centr 85188 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 737-15 chr12 37933598 37933965 + 4 NA Intergenic ALR/Alpha|Satellite|centr -382993 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 871-27 chr5 24011461 24012045 + 4 NA intron (NR_131245, intron 4 of 4) L1M2|LINE|L1 60405 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 735-11 chr12 2523573 2524016 + 4 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 148426 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 669-96 chr6 14261988 14262256 + 4 NA Intergenic L1MEg|LINE|L1 23332 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 882-22 chr2 39084017 39084404 + 4 NA intron (NM_005633, intron 1 of 22) MLT1B|LTR|ERVL-MaLR 36253 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 814-10 chr11 42736181 42736563 + 4 NA Intergenic L1MEc|LINE|L1 -482682 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 953-16 chr2 103557913 103558422 + 4 NA Intergenic Intergenic -573738 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 887-16 chr2 100505550 100505956 + 4 NA Intergenic L1M4b|LINE|L1 35271 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 962 chr1 79617803 79618086 + 4 NA Intergenic LTR47A|LTR|ERVL -611214 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 540-50 chr12 38533538 38533815 + 4 NA Intergenic Intergenic 216902 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 797-56 chr7 122314094 122314501 + 4 NA Intergenic Intergenic -9547 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 503-58 chr11 91956406 91956595 + 4 NA Intergenic Intergenic -268534 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 412-288 chr6 133116452 133116611 + 4 NA Intergenic L1MD|LINE|L1 28451 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 705-42 chr18 11442351 11442599 + 4 NA Intergenic L1M4a1|LINE|L1 -12003 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 1427-2 chr5 23261469 23262096 + 4 NA Intergenic Intergenic -245827 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 692-28 chr14 79107715 79108015 + 4 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -92117 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 553-206 chr6 61505541 61505788 + 4 NA Intergenic ALR/Alpha|Satellite|centr -68466 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 1480 chr10 39311182 39311860 + 4 NA Intergenic ALR/Alpha|Satellite|centr 614925 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1007-19 chr8 135101052 135101560 + 4 NA Intergenic L1MA7|LINE|L1 -132825 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 298-298 chr3 81024894 81025009 + 4 NA intron (NR_132411, intron 1 of 1) LTR16A2|LTR|ERVL 31083 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 517-78 chr14 58938047 58938257 + 4 NA intron (NR_110547, intron 3 of 5) L1M2a|LINE|L1 109864 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 1096-14 chr5 31135380 31135819 + 4 NA Intergenic Intergenic -58087 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 600-120 chr7 104899059 104899285 + 4 NA intron (NR_027374, intron 3 of 3) MIR|SINE|MIR 27473 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 395-180 chr2 144133283 144133396 + 4 NA intron (NM_001354350, intron 6 of 14) (AT)n|Simple_repeat|Simple_repeat 78240 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 824-19 chr2 83417888 83418267 + 4 NA Intergenic L1PB4|LINE|L1 -104737 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 575-143 chr5 22291078 22291317 + 4 NA intron (NM_001364104, intron 2 of 13) L1MA8|LINE|L1 -77347 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 428-23 chr10 56392247 56392419 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -31060 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 708-32 chr15 94895148 94895427 + 4 NA Intergenic L1P4|LINE|L1 39924 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 574-155 chr6 133596074 133596224 + 4 NA intron (NR_109982, intron 4 of 8) L1M4|LINE|L1 -224998 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 531-30 chr10 123626124 123626300 + 4 NA Intergenic Intergenic -40143 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 526-168 chr3 43044299 43044484 + 4 NA intron (NM_001129908, intron 2 of 4) intron (NM_001129908, intron 2 of 4) 61688 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 569-176 chr8 99135013 99135330 + 4 NA intron (NM_017890, intron 10 of 61) intron (NM_017890, intron 10 of 61) 121905 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 1226-2 chr11 130829311 130829799 + 4 NA Intergenic MIR|SINE|MIR 32555 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 718-69 chr5 35549792 35550125 + 4 NA Intergenic MIRc|SINE|MIR -67905 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 1649-3 chrX 89019493 89020136 + 4 NA Intergenic L1MA4|LINE|L1 272589 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 807-22 chr19 27620158 27620601 + 4 NA Intergenic ALR/Alpha|Satellite|centr -173052 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1766 chr19 36704605 36705332 + 4 NA intron (NM_001363651, intron 1 of 4) L1MEc|LINE|L1 1287 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 670-106 chr6 164435295 164435593 + 4 NA Intergenic Intergenic 386619 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 590-108 chr3 106990919 106991177 + 4 NA Intergenic L1MA6|LINE|L1 249590 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 824-27 chr20 59662532 59662983 + 4 NA intron (NM_001281507, intron 1 of 12) L2b|LINE|L2 -13904 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 850-44 chr7 22061833 22062325 + 4 NA Intergenic Intergenic -116180 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 878-3 chr1 68070649 68071166 + 4 NA intron (NR_040077, intron 2 of 9) L1MC3|LINE|L1 -19276 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 780-20 chr15 60197216 60197613 + 4 NA Intergenic Intergenic 193103 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 860-23 chr19 40132148 40132597 + 4 NA Intergenic Intergenic -41429 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 676-22 chr11 113417623 113417899 + 4 NA intron (NM_016574, intron 3 of 6) intron (NM_016574, intron 3 of 6) 29982 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 556-64 chr14 66168529 66168696 + 4 NA Intergenic Intergenic -317759 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 674-100 chr8 50328685 50329026 + 4 NA intron (NR_135797, intron 2 of 20) THE1D-int|LTR|ERVL-MaLR 164724 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 439-278 chr8 60673691 60673871 + 4 NA Intergenic Intergenic -4959 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 441-259 chr8 61873302 61873518 + 4 NA Intergenic Intergenic -16429 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 623-71 chr2 172199157 172199442 + 4 NA Intergenic Intergenic 96293 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 643-94 chr5 60965438 60965613 + 4 NA intron (NM_174889, intron 1 of 3) L1MA9|LINE|L1 20320 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 1084-6 chr15 25038416 25038994 + 4 NA intron (NR_146177, intron 23 of 147) L1MC4|LINE|L1 -3269 NR_001289 338429 NR_001289 ENSG00000239169 SNORD109B HBII-438B small nucleolar RNA, C/D box 109B snoRNA 791-41 chr2 187628764 187629174 + 4 NA Intergenic Intergenic -74464 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 697-12 chr11 50587384 50587620 + 4 NA Intergenic ALR/Alpha|Satellite|centr 178355 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 772-17 chr12 106111709 106112043 + 4 NA intron (NM_014840, intron 1 of 6) MIRb|SINE|MIR 28157 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 456-221 chr4 35687932 35688116 + 4 NA Intergenic L1MEf|LINE|L1 555915 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 664-77 chr3 90040672 90040904 + 4 NA Intergenic Intergenic 933167 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1048-4 chr10 57467229 57467660 + 4 NA Intergenic Intergenic -162885 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 551-215 chr8 90715402 90715655 + 4 NA Intergenic L1MEg|LINE|L1 -69445 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 512-214 chr5 46264526 46264774 + 4 NA Intergenic ALR/Alpha|Satellite|centr -568270 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1570-3 chr7 3738547 3739403 + 4 NA intron (NM_152744, intron 4 of 44) (T)n|Simple_repeat|Simple_repeat -390710 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 546-20 chr10 31637148 31637347 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL -237492 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 635-52 chr2 44681685 44681865 + 4 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 257113 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 580-146 chr5 3371760 3372016 + 4 NA Intergenic L1MA6|LINE|L1 -80928 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 431-104 chr17 65911498 65911657 + 4 NA intron (NM_001353129, intron 19 of 26) AluJo|SINE|Alu -85034 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 476-218 chr5 51780551 51780742 + 4 NA Intergenic MER57-int|LTR|ERV1 -227385 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 830-24 chr2 102289807 102290154 + 4 NA Intergenic Intergenic -21522 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 666-84 chr4 54069559 54069750 + 4 NA Intergenic MER21B|LTR|ERVL -5049 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 860-48 chrX 95866735 95867135 + 4 NA Intergenic L1PBa|LINE|L1 470967 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 952-13 chr16 59079837 59080193 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie -345699 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 644-88 chr6 164196640 164196919 + 4 NA Intergenic Intergenic -525295 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 621 chr1 70288612 70288822 + 4 NA intron (NM_030816, intron 9 of 12) L1MD1|LINE|L1 66005 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 678-80 chr4 94791441 94791860 + 4 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 33695 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 1319-8 chr7 10459285 10459953 + 4 NA intron (NR_147499, intron 2 of 2) L1ME2|LINE|L1 -243057 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 1224-6 chr4 75102458 75103033 + 4 NA Intergenic Intergenic -18037 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 626-25 chr11 56949253 56949555 + 4 NA Intergenic MER77B|LTR|ERVL -39510 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 1311-5 chr5 180257480 180258045 + 4 NA intron (NM_001364608, intron 6 of 12) intron (NM_001364608, intron 6 of 12) 22846 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 865-40 chr7 18934718 18934977 + 4 NA intron (NM_058176, intron 21 of 22) L1ME3D|LINE|L1 182789 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 759-20 chr14 48045983 48046392 + 4 NA Intergenic Intergenic -251173 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 709-84 chr7 62829935 62830134 + 4 NA Intergenic ALR/Alpha|Satellite|centr 474022 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 745-83 chr9 106371312 106371634 + 4 NA Intergenic Intergenic -229455 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 1524-2 chr19 52120560 52121256 + 4 NA intron (NM_178523, intron 3 of 3) L1M4c|LINE|L1 19030 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 729-61 chr5 21027403 21027646 + 4 NA Intergenic Intergenic -411989 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 580-95 chr2 191626979 191627161 + 4 NA Intergenic Intergenic -51002 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 534-203 chr5 128614363 128614613 + 4 NA Intergenic Intergenic -76243 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 613-61 chr2 97731561 97731800 + 4 NA intron (NM_001079, intron 4 of 13) L2a|LINE|L2 -2726 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 1605-2 chr5 46203896 46204802 + 4 NA Intergenic ALR/Alpha|Satellite|centr -507969 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 753-55 chr8 52518962 52519418 + 4 NA Intergenic Intergenic 46240 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 623-138 chrX 84298655 84298880 + 4 NA Intergenic L1MA6|LINE|L1 -72939 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 533-254 chrX 117146278 117146459 + 4 NA Intergenic L1PA7|LINE|L1 -328508 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 838-34 chr8 17849686 17850034 + 4 NA Intergenic Intergenic 45544 NM_147203 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|HPS|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 614-95 chr5 17933556 17933786 + 4 NA Intergenic L1MA4A|LINE|L1 126397 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 648-48 chr15 80651536 80651875 + 4 NA Intergenic AluJr|SINE|Alu -43605 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 1380-6 chr8 122402098 122402469 + 4 NA Intergenic L1PA14|LINE|L1 166361 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 953-8 chr14 49434097 49434498 + 4 NA Intergenic L1PA15|LINE|L1 152083 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 611-58 chr17 34172605 34172809 + 4 NA intron (NR_110748, intron 5 of 5) LTR8B|LTR|ERV1 10925 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 894-24 chr22 34214311 34214735 + 4 NA Intergenic L1MEd|LINE|L1 -291635 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 336-150 chr13 78890390 78890530 + 4 NA Intergenic Intergenic -50410 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 551-179 chr6 133445098 133445312 + 4 NA intron (NM_172103, intron 3 of 18) L1MEf|LINE|L1 203706 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 894-41 chr6 101265621 101265941 + 4 NA Intergenic Intergenic -133204 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 1072-18 chr5_GL000208v1_random 45353 45864 + 4 NA NA ALR/Alpha|Satellite|centr NA NA 419-89 chr14 53296533 53296722 + 4 NA Intergenic Intergenic 143273 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 561-44 chr12 26763996 26764262 + 4 NA intron (NM_002223, intron 2 of 56) L1MC|LINE|L1 69065 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 885-3 chr11 79597037 79597524 + 4 NA Intergenic HAL1|LINE|L1 -156250 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 1077-2 chr11 80271969 80272508 + 4 NA Intergenic L1MA9|LINE|L1 490565 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 393-249 chr4 112590264 112590449 + 4 NA intron (NM_001350397, intron 9 of 26) intron (NM_001350397, intron 9 of 26) -46608 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 951-7 chr12 55112593 55113059 + 4 NA Intergenic Intergenic -16943 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 536-215 chr7 52326856 52327026 + 4 NA Intergenic Intergenic -708692 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 827-34 chr3 122955386 122955822 + 4 NA intron (NM_001256348, intron 1 of 21) intron (NM_001256348, intron 1 of 21) 20530 NM_001256347 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 335-120 chr12 18230454 18230537 + 4 NA Intergenic L1MA4A|LINE|L1 -31045 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 1105-3 chr11 41677541 41678177 + 4 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat -36709 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 637-112 chr7 62647390 62647585 + 4 NA Intergenic ALR/Alpha|Satellite|centr 656569 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 775-82 chr8 88943581 88943935 + 4 NA Intergenic Intergenic -616275 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 831-31 chr3 93723871 93724111 + 4 NA Intergenic ALR/Alpha|Satellite|centr 250090 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 680-114 chr8 83462785 83463048 + 4 NA Intergenic Intergenic 59158 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 551-55 chr14 78376214 78376375 + 4 NA intron (NR_073547, intron 4 of 20) MER102c|DNA|hAT-Charlie -27425 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 555-37 chr11 112892159 112892350 + 4 NA Intergenic Intergenic -69166 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 624-37 chr14 72670115 72670287 + 4 NA 3' UTR (NM_012074, exon 9 of 10) 3' UTR (NM_012074, exon 9 of 10) 153381 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 724-33 chr2 31598643 31598917 + 4 NA Intergenic L1MA2|LINE|L1 -17842 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 654-61 chr1_KI270763v1_alt 859028 859251 + 4 NA intron (NM_001370074, intron 1 of 13) intron (NM_001370074, intron 1 of 13) -3457 NM_001206729 10000 Hs.498292 NM_005465 ENSG00000117020 AKT3 MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 AKT serine/threonine kinase 3 protein-coding 670-3 chr1 54668179 54668489 + 4 NA intron (NM_001039464, intron 4 of 23) intron (NM_001039464, intron 4 of 23) 26548 NM_001039464 374977 Hs.412482 NM_198547 ENSG00000184313 MROH7 C1orf175|HEATR8 maestro heat like repeat family member 7 protein-coding 952-3 chr1 229897859 229898390 + 4 NA Intergenic Intergenic -4216 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 511-271 chr8 135102543 135102713 + 4 NA Intergenic HAL1|LINE|L1 -131503 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 832-26 chr3 64522674 64522920 + 4 NA intron (NM_001318781, intron 37 of 38) Cheshire|DNA|hAT-Charlie -38549 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 776-3 chr1 106194775 106194994 + 4 NA Intergenic L1PA12|LINE|L1 -166631 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 582-67 chr2 37557023 37557187 + 4 NA Intergenic Intergenic 115094 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 709-34 chr19 56426557 56426902 + 4 NA 3' UTR (NM_001159861, exon 5 of 5) 3' UTR (NM_001159861, exon 5 of 5) 22397 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 654-118 chr7 71267129 71267361 + 4 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) -40429 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 1237-4 chr2 35268993 35269647 + 4 NA Intergenic L1MA6|LINE|L1 -202085 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 675-37 chr18 64810802 64811164 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR -550928 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 697-49 chr20 43141069 43141255 + 4 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 48744 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 459-99 chr16 31600868 31601096 + 4 NA Intergenic Intergenic -31458 NR_027011 440359 Hs.650902 NR_027011 YBX3P1 CSDAP1 Y-box binding protein 3 pseudogene 1 pseudo 1342-5 chr6 57334053 57334501 + 4 NA intron (NM_000947, intron 5 of 13) L1MA8|LINE|L1 16647 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 434-318 chr9 86628916 86629074 + 4 NA Intergenic MamGypLTR1a|LTR|Gypsy -274585 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 654-46 chr17 15122034 15122277 + 4 NA Intergenic Intergenic -15968 NR_103559 94151 Hs.98684 NR_103559 CDRT8 - CMT1A duplicated region transcript 8 ncRNA 660-106 chr8 76954136 76954524 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR 12520 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 830-58 chr8 137113860 137114255 + 4 NA Intergenic L1MB7|LINE|L1 299531 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 412-335 chr8 130439403 130439565 + 4 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 4176 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 718-30 chr16 8422755 8423145 + 4 NA Intergenic L1MC|LINE|L1 166888 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 174-32 chr12 71079766 71079832 + 4 NA Intergenic Intergenic 78010 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 676-71 chr21 28119318 28119562 + 4 NA non-coding (NR_126012, exon 6 of 6) non-coding (NR_126012, exon 6 of 6) 29037 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 436-174 chr22 38344823 38344991 + 4 NA intron (NR_002821, intron 4 of 4) intron (NR_002821, intron 4 of 4) -26823 NM_001894 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIe|CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 651-117 chr8 84752552 84752882 + 4 NA intron (NM_001287244, intron 1 of 7) MSTA-int|LTR|ERVL-MaLR 46790 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 765-70 chrX 98591387 98591768 + 4 NA Intergenic MER57-int|LTR|ERV1 -1027042 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 500-9 chr1 112946204 112946411 + 4 NA intron (NM_003051, intron 1 of 4).2 AluSz|SINE|Alu 9756 NM_001166496 6566 Hs.75231 NM_003051 ENSG00000155380 SLC16A1 HHF7|MCT|MCT1|MCT1D solute carrier family 16 member 1 protein-coding 606-140 chr6 75400064 75400274 + 4 NA intron (NR_125859, intron 2 of 8) intron (NR_125859, intron 2 of 8) 16983 NR_125859 101928540 Hs.526972 NR_125859 LOC101928540 - uncharacterized LOC101928540 ncRNA 1313-4 chr13 33603752 33604405 + 4 NA intron (NM_001243476, intron 3 of 17) L1ME3Cz|LINE|L1 72716 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 741-51 chr5 30205795 30206033 + 4 NA Intergenic Ricksha_c|DNA|MULE-MuDR 325354 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1020 chr1 61567033 61567621 + 4 NA Intergenic MamRep1151|LTR?|LTR? -86915 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 494-142 chr2 194222872 194223013 + 4 NA Intergenic MIR|SINE|MIR -121327 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 985-11 chr19 32146163 32146662 + 4 NA Intergenic L1MDa|LINE|L1 -40496 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 584-117 chr4 83802052 83802298 + 4 NA Intergenic L1MA9|LINE|L1 266067 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 748-88 chr9 113042589 113042900 + 4 NA exon (NM_001282515, exon 4 of 4) exon (NM_001282515, exon 4 of 4) 13980 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 950-11 chr19 354218 354663 + 4 NA Intergenic L1M7|LINE|L1 -9599 NM_001346105 54531 Hs.101891 NM_017550 ENSG00000105556 MIER2 KIAA1193|Mi-er2 MIER family member 2 protein-coding 734-56 chr5 15730582 15730925 + 4 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -115751 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 498-259 chr7 110872217 110872434 + 4 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -218681 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 786-31 chr2 81741588 81741849 + 4 NA Intergenic L1MB7|LINE|L1 -274772 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 403-2 chr1 37251611 37251829 + 4 NA Intergenic MIR|SINE|MIR 90157 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 849-43 chr7 62820355 62820744 + 4 NA Intergenic ALR/Alpha|Satellite|centr 483507 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 390-264 chr4 52576259 52576385 + 4 NA Intergenic L1MD3|LINE|L1 80217 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 563-87 chr2 59003239 59003496 + 4 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -214341 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 589-24 chr12 20359451 20359613 + 4 NA Intergenic Intergenic -9713 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 746-15 chr11 23847487 23847835 + 4 NA Intergenic L2c|LINE|L2 -428471 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 745-52 chr5 26410842 26411127 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR 627602 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1693-4 chr8 123997536 123998341 + 4 NA intron (NM_001039112, intron 12 of 40) L1M1|LINE|L1 42844 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 678-17 chr11 109183560 109183757 + 4 NA Intergenic Intergenic -238532 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 1143-17 chr7 64509590 64510185 + 4 NA Intergenic LTR25-int|LTR|ERV1 53184 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 550-233 chr8 115355738 115355996 + 4 NA Intergenic (AAGTCTA)n|Simple_repeat|Simple_repeat 312146 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 549-3 chr1 46914997 46915153 + 4 NA Intergenic L1PB2|LINE|L1 -14600 NR_002788 163720 Hs.591431 NR_002788 ENSG00000154198 CYP4Z2P - cytochrome P450 family 4 subfamily Z member 2, pseudogene pseudo 920-10 chr15 34670451 34670755 + 4 NA Intergenic Intergenic -14839 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 475-281 chr8 83478022 83478298 + 4 NA Intergenic Intergenic 74402 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 339-157 chr14 56435309 56435513 + 4 NA Intergenic MER4-int|LTR|ERV1 -78920 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 933-25 chr3 43226876 43227315 + 4 NA Intergenic Intergenic -59417 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 774-69 chr5 45140562 45140946 + 4 NA Intergenic Intergenic 331807 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 841-20 chr2 175800732 175801120 + 4 NA Intergenic Intergenic 201341 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 1106 chr10 63997328 63997642 + 4 NA Intergenic MER3|DNA|hAT-Charlie -475595 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 614-99 chr5 61784187 61784411 + 4 NA Intergenic Intergenic -48601 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 1693-5 chr8 142371342 142371930 + 4 NA intron (NM_001366903, intron 1 of 9) L1ME1|LINE|L1 31546 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 823-30 chr7 53670076 53670413 + 4 NA intron (NR_038371, intron 5 of 5) L1MB4|LINE|L1 141687 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 709-24 chr14 95800117 95800457 + 4 NA Intergenic L1MB8|LINE|L1 -76105 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 552-6 chr1 70784545 70784812 + 4 NA intron (NR_125938, intron 6 of 6) L1ME4c|LINE|L1 78225 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 763-61 chr7 101479052 101479373 + 4 NA intron (NM_133457, intron 3 of 12) L1ME3Cz|LINE|L1 89794 NR_103749 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 1190-4 chr3 105072545 105073100 + 4 NA Intergenic L1MEc|LINE|L1 -293891 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 1337-2 chr20 46455544 46456148 + 4 NA TTS (NR_045983) TTS (NR_045983) 1797 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 697-39 chr17 72805114 72805502 + 4 NA intron (NM_001352692, intron 6 of 9) MLT1K|LTR|ERVL-MaLR -164836 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 678-7 chr10 49378029 49378287 + 4 NA intron (NM_001276451, intron 6 of 6) L1ME3|LINE|L1 17931 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 623-44 chr17 51888385 51888600 + 4 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 270222 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 677-45 chr2 75900445 75900718 + 4 NA Intergenic Intergenic -189666 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 1133-10 chr5 143545986 143546460 + 4 NA Intergenic L1ME1|LINE|L1 -110711 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 591-152 chr7 21376695 21376885 + 4 NA Intergenic Intergenic -51293 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 819-9 chr15 58316235 58316682 + 4 NA Intergenic L1PA11|LINE|L1 -115533 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 1090 chr10 62601406 62602041 + 4 NA intron (NM_199452, intron 1 of 6) L1M4|LINE|L1 81275 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 1056-7 chr2 211014709 211015063 + 4 NA Intergenic Intergenic 397315 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 1275-4 chr2 100697490 100698250 + 4 NA Intergenic L1M4b|LINE|L1 94131 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 619-111 chr6 74104661 74104911 + 4 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 35335 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 353-175 chr16 47298494 47298633 + 4 NA intron (NM_030790, intron 10 of 17) L1PB4|LINE|L1 154495 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 802-50 chr4 55048403 55048729 + 4 NA Intergenic L1MCa|LINE|L1 77029 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 663-93 chr6 78692784 78693013 + 4 NA Intergenic Intergenic -153589 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 797-53 chr7 88256199 88256585 + 4 NA Intergenic Intergenic -29399 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 1062-16 chr5 120471724 120472026 + 4 NA intron (NM_001308087, intron 1 of 1) intron (NM_001308087, intron 1 of 1) 6244 NM_001308087 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 875-16 chr2 51326949 51327366 + 4 NA intron (NR_135237, intron 2 of 10) MER67D|LTR|ERV1 294556 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 592-169 chr8 36284421 36284621 + 4 NA Intergenic L1MA3|LINE|L1 -499853 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 546-192 chr5 89869054 89869220 + 4 NA Intergenic Intergenic 147583 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 1335-4 chr8 130496291 130496912 + 4 NA Intergenic L1M5|LINE|L1 -52927 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 787-26 chr21 28260695 28261100 + 4 NA Intergenic MIR|SINE|MIR -32230 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 698-40 chr2 149341760 149341986 + 4 NA intron (NM_194317, intron 1 of 4) MLT1A1|LTR|ERVL-MaLR 11286 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 543-38 chr10 66218794 66219074 + 4 NA intron (NM_001127384, intron 13 of 17) MLT1F-int|LTR|ERVL-MaLR 647509 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 424-95 chr17 52430037 52430297 + 4 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 39645 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 863-51 chr8 119291404 119291729 + 4 NA Intergenic L2|LINE|L2 -33605 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 609-27 chr13 75035696 75035947 + 4 NA Intergenic L1PA13|LINE|L1 204560 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 810-23 chr2 98249359 98249704 + 4 NA intron (NM_001345864, intron 13 of 21) L1MD2|LINE|L1 -96624 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 511-218 chr6 6576042 6576233 + 4 NA intron (NR_026970, intron 1 of 7) MER33|DNA|hAT-Charlie -12583 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 713-35 chr2 23346113 23346402 + 4 NA Intergenic Intergenic -38922 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 826-67 chr9 80235948 80236298 + 4 NA Intergenic Intergenic 261100 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 787-54 chr8 119107330 119107707 + 4 NA 3' UTR (NM_006438, exon 6 of 6) 3' UTR (NM_006438, exon 6 of 6) -38736 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 1401-9 chr8 129756278 129756979 + 4 NA intron (NM_031415, intron 6 of 13) L1MA2|LINE|L1 29996 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 578-123 chr3 149835136 149835407 + 4 NA intron (NM_007282, intron 2 of 10) L1MB3|LINE|L1 22583 NM_183383 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 707-84 chr5 120812426 120812709 + 4 NA Intergenic L1PB4|LINE|L1 281103 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 703-24 chr12 65374025 65374308 + 4 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 95179 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 720-45 chr2 123076662 123076863 + 4 NA Intergenic Intergenic -3281 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 755-46 chr4 94326539 94326764 + 4 NA intron (NM_014485, intron 2 of 5) L1M2|LINE|L1 16185 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 606-113 chr4 45885588 45885815 + 4 NA Intergenic L1PA15|LINE|L1 238353 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 553-65 chr14 70942153 70942338 + 4 NA intron (NM_014982, intron 1 of 35) L1PA5|LINE|L1 34786 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 659-116 chr8 88539894 88540177 + 4 NA Intergenic MLT1E2-int|LTR|ERVL-MaLR -212552 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 719-10 chr10 44144440 44144681 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie -148190 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 792-15 chr12 37913815 37914191 + 4 NA Intergenic ALR/Alpha|Satellite|centr -402771 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 573-145 chr5 44696727 44696977 + 4 NA Intergenic Intergenic 111941 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 374-251 chr3 88328885 88329087 + 4 NA Intergenic MER63D|DNA|hAT-Blackjack -9470 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 604-51 chr15 40085390 40085554 + 4 NA Intergenic Intergenic 20614 NM_001003942 90427 Hs.591104 NM_033503 ENSG00000104081 BMF - Bcl2 modifying factor protein-coding 631-2 chr1 45890535 45890745 + 4 NA intron (NM_001324320, intron 4 of 29) MLT1B|LTR|ERVL-MaLR 26292 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 276-448 chr8 75558209 75558339 + 4 NA intron (NM_001330561, intron 8 of 11) intron (NM_001330561, intron 8 of 11) 18306 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 675-50 chr20 42042515 42042831 + 4 NA Intergenic Intergenic -424296 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 570-4 chr1 65769107 65769306 + 4 NA Intergenic L1MB7|LINE|L1 -23304 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 497-233 chr5 106672597 106672748 + 4 NA Intergenic LTR85a|LTR|Gypsy? 338342 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 931-13 chr2 77529917 77530432 + 4 NA Intergenic L1MEg|LINE|L1 -7741 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 707-19 chr12 127767668 127767898 + 4 NA Intergenic Intergenic -112195 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 710-65 chr3 80304156 80304551 + 4 NA Intergenic Intergenic -460544 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 628-85 chr22 47696587 47696766 + 4 NA intron (NR_122046, intron 6 of 8) L1ME3|LINE|L1 65002 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 634-127 chr5 151307918 151308177 + 4 NA Intergenic L1M1|LINE|L1 -4281 NM_001145017 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 615-7 chr10 39327540 39327768 + 4 NA Intergenic ALR/Alpha|Satellite|centr 631058 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 825-40 chr4 115606842 115607252 + 4 NA Intergenic Intergenic -493427 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 548-84 chr16 51064427 51064646 + 4 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 46778 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 709-87 chr8 60466827 60467068 + 4 NA Intergenic L2a|LINE|L2 -49963 NM_001242644 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 556-94 chr19 37461651 37461799 + 4 NA intron (NM_001330482, intron 2 of 4) L2a|LINE|L2 5719 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 610-22 chr10 76487442 76487727 + 4 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -400460 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 992-11 chr2 43112980 43113450 + 4 NA Intergenic L2a|LINE|L2 -10770 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 630-66 chr2 191824914 191825163 + 4 NA Intergenic FordPrefect|DNA|hAT-Tip100 22050 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 262-336 chr5 15301301 15301411 + 4 NA Intergenic Charlie2b|DNA|hAT-Charlie -34796 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 992-6 chr12 52670463 52670808 + 4 NA Intergenic L1ME4b|LINE|L1 9772 NM_006121 3848 Hs.80828 NM_006121 ENSG00000167768 KRT1 CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK keratin 1 protein-coding 818-53 chr6 64202664 64203016 + 4 NA intron (NM_001292009, intron 31 of 43) MLT1C|LTR|ERVL-MaLR 396004 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 574-140 chr5 82764521 82764761 + 4 NA Intergenic L1MEc|LINE|L1 -75514 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 533-182 chr5 63271857 63272056 + 4 NA Intergenic L1PA10|LINE|L1 690336 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 439-132 chr2 67045901 67046088 + 4 NA Intergenic MIR|SINE|MIR -40452 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 959-20 chr20 14775141 14775594 + 4 NA intron (NM_001351663, intron 5 of 17) MSTB|LTR|ERVL-MaLR 154151 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 831-47 chr7 138350906 138351338 + 4 NA Intergenic LTR26|LTR|ERV1 -109137 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 694-46 chr15 93697824 93698161 + 4 NA Intergenic L1MEg|LINE|L1 -158568 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 811-4 chr10 37963310 37963758 + 4 NA intron (NR_138064, intron 2 of 6) MSTB|LTR|ERVL-MaLR 12446 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 1139-8 chr3 146389306 146389743 + 4 NA Intergenic Intergenic 79777 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 590-53 chr14 72762113 72762310 + 4 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 130438 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 655-31 chr12 125800871 125801162 + 4 NA Intergenic Intergenic 178564 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 474-21 chr1 194783464 194783706 + 4 NA Intergenic Intergenic 1305130 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 796-45 chr5 95947367 95947690 + 4 NA intron (NM_012081, intron 1 of 11) MIRc|SINE|MIR 14323 NM_012081 22936 Hs.192221 NM_012081 ENSG00000118985 ELL2 MRCCAT1 elongation factor for RNA polymerase II 2 protein-coding 954-39 chr5 55302945 55303382 + 4 NA intron (NR_144323, intron 1 of 26) intron (NR_144323, intron 1 of 26) 4531 NR_144324 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 336-292 chr2 146863494 146863639 + 4 NA Intergenic Intergenic 276509 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 1085-15 chr5 82496623 82497116 + 4 NA Intergenic L1MEd|LINE|L1 217407 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 1554 chr10 78884208 78884884 + 4 NA Intergenic L1ME1|LINE|L1 182902 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 769-43 chr4 31239344 31239727 + 4 NA Intergenic Intergenic 68391 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 502-266 chr8 85000246 85000465 + 4 NA Intergenic Intergenic -106883 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 685-56 chr2 220726217 220726502 + 4 NA Intergenic L1MDa|LINE|L1 -819794 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 710-86 chr7 46825683 46825914 + 4 NA Intergenic L1MDa|LINE|L1 -128676 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 442-270 chr7 16244740 16244935 + 4 NA intron (NR_038946, intron 2 of 4) intron (NR_038946, intron 2 of 4) 34351 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 541-208 chr6 163042660 163042863 + 4 NA TTS (NR_110871) TTS (NR_110871) 11400 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 1019-4 chr10 13551983 13552279 + 4 NA Intergenic L1M4a1|LINE|L1 -23117 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 845-28 chr5 32720701 32721132 + 4 NA intron (NM_000908, intron 1 of 7) Tigger13a|DNA|TcMar-Tigger 9595 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 720-85 chr7 68341112 68341387 + 4 NA Intergenic MER94|DNA|hAT-Blackjack 320996 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 738-24 chr15 100477095 100477436 + 4 NA intron (NM_001290341, intron 9 of 13) intron (NM_001290341, intron 9 of 13) 67021 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 699-19 chr11 91030421 91030692 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR -161354 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 870-33 chr5 101880427 101880784 + 4 NA Intergenic Intergenic 415679 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 494-184 chr3 106859203 106859343 + 4 NA Intergenic L1MEd|LINE|L1 381365 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 1206-11 chr7 31945641 31946182 + 4 NA intron (NM_001322059, intron 3 of 17) L1MCa|LINE|L1 124496 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 723-54 chr4 106730422 106730714 + 4 NA Intergenic Intergenic 296944 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 648-67 chr2 65805425 65805777 + 4 NA Intergenic L1MEi|LINE|L1 -373002 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 664-48 chr18 3220531 3220717 + 4 NA promoter-TSS (NM_003803) promoter-TSS (NM_003803) -516 NM_003803 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 1070-18 chr8 20772168 20772503 + 4 NA Intergenic Intergenic -157409 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 432-288 chr8 71891410 71891523 + 4 NA intron (NR_033651, intron 1 of 2) L1M2|LINE|L1 -46970 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 1087-5 chr14 60847596 60848191 + 4 NA intron (NM_002431, intron 6 of 7) L1M4a2|LINE|L1 113132 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 576-86 chr2 116658437 116658685 + 4 NA Intergenic L1M1|LINE|L1 -1156130 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 527-144 chr2 169884972 169885264 + 4 NA intron (NM_172070, intron 5 of 38) intron (NM_172070, intron 5 of 38) 57610 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 733-9 chr11 23869140 23869466 + 4 NA Intergenic MER4D|LTR|ERV1 -450113 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 590-165 chr8 84088207 84088444 + 4 NA Intergenic L1MC5a|LINE|L1 -94462 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 468-145 chr2 77728899 77729125 + 4 NA Intergenic Intergenic -186922 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 1092-8 chr15 87450044 87450427 + 4 NA Intergenic Intergenic -126694 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 337-131 chr13 46931411 46931579 + 4 NA Intergenic L1MB1|LINE|L1 -34419 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 520-312 chr8 131998867 131999086 + 4 NA intron (NM_015137, intron 19 of 22) intron (NM_015137, intron 19 of 22) 60406 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 1126-9 chr4 164024971 164025458 + 4 NA intron (NM_001166373, intron 2 of 7) L1PA16|LINE|L1 172497 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 778-43 chr21 29219878 29220218 + 4 NA intron (NR_027072, intron 1 of 1) AluJo|SINE|Alu 26554 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 644-51 chr20 59640972 59641247 + 4 NA intron (NM_001281507, intron 1 of 12) MLT2B1|LTR|ERVL 12500 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1112-17 chrX 154817798 154818301 + 4 NA Intergenic MER4-int|LTR|ERV1 -12522 NM_001166462 4354 Hs.496984 NM_002436 ENSG00000130830 MPP1 AAG12|DXS552E|EMP55|MRG1|PEMP membrane palmitoylated protein 1 protein-coding 614-130 chr8 54589778 54590100 + 4 NA Intergenic L2a|LINE|L2 -26157 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 722-21 chr12 2212429 2212783 + 4 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 10875 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 560-26 chr11 26923704 26923852 + 4 NA Intergenic L1MA2|LINE|L1 -70334 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 1331-6 chr6 122914828 122915459 + 4 NA Intergenic L1M3de|LINE|L1 -81092 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 811-18 chr16 9387485 9387886 + 4 NA intron (NR_135195, intron 1 of 2) MER21C|LTR|ERVL 32097 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 1060-15 chr4 175520647 175521010 + 4 NA Intergenic MIR|SINE|MIR 266848 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 607-93 chr3 241789 242094 + 4 NA intron (NR_045572, intron 1 of 2) intron (NR_045572, intron 1 of 2) 44052 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 885-34 chr9 102630496 102630883 + 4 NA intron (NR_103830, intron 3 of 4) L1PA16|LINE|L1 111052 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 799-5 chr1 199055320 199055794 + 4 NA intron (NR_126351, intron 2 of 2) intron (NR_126351, intron 2 of 2) -36593 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 1081-13 chr6 160192843 160193402 + 4 NA Intergenic L1MA5A|LINE|L1 65699 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 649-27 chr14 81967354 81967641 + 4 NA Intergenic MER39|LTR|ERV1 -224359 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 656-144 chrX 5798425 5798723 + 4 NA Intergenic Intergenic -427784 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 369-156 chr17 34851449 34851602 + 4 NA Intergenic Charlie4a|DNA|hAT-Charlie 109935 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 621-48 chr17 51377510 51377692 + 4 NA Intergenic Intergenic 40886 NR_122104 440446 Hs.626751 NR_122104 ENSG00000267452 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 962-5 chr11 25531851 25532169 + 4 NA Intergenic Intergenic -657113 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 410-240 chr5 57465516 57465782 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 17162 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 836-63 chr8 127356827 127357228 + 4 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -43372 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 818-37 chr3 88351196 88351631 + 4 NA intron (NM_001368167, intron 2 of 2) L1ME4a|LINE|L1 12957 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 378-72 chr10 122666343 122666483 + 4 NA Intergenic MER4B-int|LTR|ERV1 -6469 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 606-116 chr4 55575901 55576121 + 4 NA intron (NM_152401, intron 3 of 5) L1M4|LINE|L1 16234 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 931-30 chr9 12503772 12504183 + 4 NA Intergenic Intergenic -189408 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 862-4 chr10 39531476 39531943 + 4 NA Intergenic ALR/Alpha|Satellite|centr 835113 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 764-40 chr2 151221924 151222120 + 4 NA Intergenic L1ME3|LINE|L1 39841 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 632-79 chr3 154652690 154652869 + 4 NA Intergenic MLT2D|LTR|ERVL -222589 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 950 chr1 58892246 58892591 + 4 NA intron (NR_108106, intron 1 of 1) Charlie4a|DNA|hAT-Charlie 107267 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 295-381 chr5 86710101 86710198 + 4 NA Intergenic (ATTTTA)n|Simple_repeat|Simple_repeat -36669 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 850-48 chr7 73388216 73388456 + 4 NA Intergenic L1M4b|LINE|L1 -45442 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 396-52 chr10 64146696 64146841 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -624878 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 645-40 chr16 68614224 68614415 + 4 NA Intergenic LTR67B|LTR|ERVL -30991 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 531-224 chr7 17917445 17917632 + 4 NA intron (NM_001350862, intron 1 of 25) L1PA17|LINE|L1 22956 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 778-67 chr8 124019272 124019700 + 4 NA intron (NM_001039112, intron 16 of 40) intron (NM_001039112, intron 16 of 40) 21296 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 1298-6 chr7 51987252 51987629 + 4 NA Intergenic Intergenic -594184 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 612-149 chr9 28600071 28600358 + 4 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 119091 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 610-104 chr21 41341290 41341656 + 4 NA intron (NM_058186, intron 3 of 7) L1ME3B|LINE|L1 -20554 NM_002463 4600 Hs.926 NM_002463 ENSG00000183486 MX2 MXB MX dynamin like GTPase 2 protein-coding 757-32 chr2 234034038 234034373 + 4 NA Intergenic L1M3d|LINE|L1 -16497 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 1025-17 chr6 123817024 123817565 + 4 NA intron (NM_001040214, intron 1 of 6) MER20|DNA|hAT-Charlie 13429 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 390-94 chr14 56732669 56732780 + 4 NA Intergenic MIRc|SINE|MIR 72943 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 494-107 chr18 36869737 36869910 + 4 NA intron (NR_136303, intron 4 of 13) intron (NR_136303, intron 4 of 13) -40607 NM_001271951 25941 Hs.436636 NM_015476 ENSG00000134779 TPGS2 C18orf10|HMFN0601|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 2067 chr19 27569385 27570138 + 4 NA Intergenic ALR/Alpha|Satellite|centr -223670 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 500-220 chr5 31097792 31098003 + 4 NA Intergenic Intergenic -95789 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 874-3 chr10 84557885 84558276 + 4 NA Intergenic L1MEg|LINE|L1 132911 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 653-74 chr2 150345398 150345710 + 4 NA Intergenic L2|LINE|L2 -88547 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 498-209 chr5 27138391 27138668 + 4 NA Intergenic Intergenic -99943 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 532-262 chr8 35193560 35193732 + 4 NA Intergenic L1MA9|LINE|L1 -41829 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 615-35 chr14 80251469 80251689 + 4 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -20522 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 970-20 chr8 140334975 140335404 + 4 NA intron (NM_001160372, intron 9 of 22) L2c|LINE|L2 122555 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 972-10 chr2 133356326 133356781 + 4 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 90358 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 765-14 chr12 38024568 38024886 + 4 NA Intergenic Intergenic -292047 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 498-261 chr7 147818646 147818803 + 4 NA intron (NM_014141, intron 12 of 22) intron (NM_014141, intron 12 of 22) 147045 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 686-10 chr10 64225308 64225524 + 4 NA Intergenic L1MA5|LINE|L1 -600112 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 376-331 chr5 123674045 123674202 + 4 NA Intergenic Intergenic 128706 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 699-103 chr8 128411030 128411374 + 4 NA intron (NR_121672, intron 6 of 7) intron (NR_121672, intron 6 of 7) 153477 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 816-10 chr14 57457350 57457770 + 4 NA Intergenic L1MA8|LINE|L1 36297 NM_001283059 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 690-26 chr12 108024018 108024282 + 4 NA Intergenic Intergenic -105138 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 591-94 chr22 27741352 27741532 + 4 NA Intergenic MER33|DNA|hAT-Charlie 60314 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 630-69 chr2 239710363 239710586 + 4 NA Intergenic L1MB8|LINE|L1 -52386 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 735-47 chr2 185940937 185941240 + 4 NA Intergenic L1MA4A|LINE|L1 -140937 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 1170-4 chr4 43237554 43237990 + 4 NA Intergenic Intergenic 254771 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 1197-3 chr19 32194960 32195496 + 4 NA Intergenic Intergenic -89312 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 940-26 chr4 185633812 185634221 + 4 NA intron (NM_001145670, intron 11 of 20) intron (NM_001145670, intron 11 of 20) 22730 NM_001145675 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 884-30 chr3 41531665 41531999 + 4 NA intron (NR_136342, intron 30 of 34) L3|LINE|CR1 332327 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 1152-4 chr2 111719427 111719829 + 4 NA Intergenic Intergenic 51506 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 1059-6 chr14 37410076 37410703 + 4 NA intron (NM_138731, intron 11 of 13) L1MEg|LINE|L1 184860 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 255-221 chr2 197740396 197740515 + 4 NA intron (NM_033030, intron 10 of 10) intron (NM_033030, intron 10 of 10) 35086 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 465-185 chr3 130233678 130233814 + 4 NA intron (NR_027898, intron 9 of 22) intron (NR_027898, intron 9 of 22) 20926 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 684-99 chr5 98511352 98511724 + 4 NA Intergenic Intergenic -257094 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 470-190 chr4 30887306 30887464 + 4 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 167016 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 630-154 chr9 138028569 138028758 + 4 NA intron (NM_001243812, intron 20 of 45) MER101|LTR|ERV1 16408 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 318-35 chr1 189380774 189380885 + 4 NA Intergenic Intergenic 1095181 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 246-80 chr11 121255027 121255119 + 4 NA Intergenic L1MEf|LINE|L1 -37698 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 624-115 chr8 64632174 64632389 + 4 NA intron (NM_004820, intron 1 of 5) L1MB1|LINE|L1 -50389 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 628-25 chr10 42510909 42511159 + 4 NA Intergenic Intergenic 35543 NR_026827 84856 Hs.55977 NM_032770 ENSG00000185904 LINC00839 - long intergenic non-protein coding RNA 839 ncRNA 1762-3 chr5 124172053 124173018 + 4 NA intron (NR_125774, intron 4 of 5) L1MEg|LINE|L1 265985 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 917-8 chr15 68949680 68950208 + 4 NA intron (NM_001184780, intron 1 of 15) L1MC5|LINE|L1 19419 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 1157-3 chr10 84084653 84085249 + 4 NA Intergenic L1MCa|LINE|L1 -54558 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 997-24 chr5 150979432 150979881 + 4 NA Intergenic Intergenic -33072 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 466-39 chr10 112259165 112259314 + 4 NA Intergenic L1ME4a|LINE|L1 -24161 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 638-37 chr14 43227837 43228010 + 4 NA Intergenic Intergenic 1279360 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1201-6 chr7 4090819 4091240 + 4 NA intron (NM_152744, intron 22 of 44) intron (NM_152744, intron 22 of 44) -38656 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 492-5 chr1 73244943 73245137 + 4 NA Intergenic L1PA16|LINE|L1 -61130 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 714-25 chr15 42025940 42026227 + 4 NA intron (NM_001206670, intron 1 of 19) intron (NM_001206670, intron 1 of 19) 24620 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 920-24 chr7 34309039 34309454 + 4 NA Intergenic LTR1B0|LTR|ERV1 -348972 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 939-6 chr10 18831556 18832017 + 4 NA Intergenic Intergenic 172355 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 667-110 chr8 55047952 55048171 + 4 NA Intergenic L1M2c|LINE|L1 -53967 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 655-70 chr20 8629106 8629394 + 4 NA intron (NM_182734, intron 4 of 32) (TAA)n|Simple_repeat|Simple_repeat -201935 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 721-10 chr10 56273322 56273728 + 4 NA Intergenic L1MC3|LINE|L1 87734 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 663-79 chr4 144808256 144808433 + 4 NA Intergenic L1MA4A|LINE|L1 162188 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 662-68 chr4 72962226 72962540 + 4 NA Intergenic L1PA15-16|LINE|L1 107333 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 430-282 chr7 45954187 45954381 + 4 NA Intergenic L1ME4a|LINE|L1 -33012 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 1229 chr10 117654006 117654599 + 4 NA Intergenic MLT1H2|LTR|ERVL-MaLR -109234 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 752-65 chr6 40695387 40695714 + 4 NA Intergenic Intergenic -108186 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 854-8 chr1 227654246 227654623 + 4 NA exon (NM_001367910, exon 5 of 5) exon (NM_001367910, exon 5 of 5) 43273 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 586-171 chrX 78247702 78247971 + 4 NA Intergenic L1ME4b|LINE|L1 79775 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 894-20 chr2 51338560 51338837 + 4 NA intron (NR_135237, intron 3 of 10) L2a|LINE|L2 306097 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 698-94 chrX 63889915 63890254 + 4 NA Intergenic L1PA15|LINE|L1 -103997 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 982-31 chr8 122420384 122420668 + 4 NA intron (NR_131202, intron 2 of 3) MLT1L|LTR|ERVL-MaLR 148118 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 889-25 chr21 30865282 30865653 + 4 NA Intergenic MIRc|SINE|MIR 16113 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 373-269 chr3 168976347 168976449 + 4 NA Intergenic Intergenic 74453 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 805-31 chr3 190353482 190353760 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie -31175 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 565-132 chr4 90248036 90248194 + 4 NA intron (NM_207491, intron 1 of 7) intron (NM_207491, intron 1 of 7) 13084 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 931 chr1 2957506 2957956 + 4 NA Intergenic L1MEg|LINE|L1 -63736 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 530-196 chr5 45943884 45944079 + 4 NA Intergenic ALR/Alpha|Satellite|centr -247601 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 461-224 chr5 145860217 145860433 + 4 NA intron (NM_001080516, intron 2 of 2) MIR|SINE|MIR 12643 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin and cysteine rich domain containing 2 protein-coding 550-197 chr6 43732692 43732851 + 4 NA Intergenic L1M4|LINE|L1 -37438 NM_001171627 7422 Hs.73793 NM_003376 ENSG00000112715 VEGFA MVCD1|VEGF|VPF vascular endothelial growth factor A protein-coding 898 chr1 41755317 41755780 + 4 NA intron (NM_024503, intron 1 of 8) L1MD2|LINE|L1 163374 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 565-106 chr21 23824644 23824884 + 4 NA Intergenic Intergenic -439929 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 600-119 chr7 78730784 78731066 + 4 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -278063 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 689-8 chr1 196868327 196868537 + 4 NA Intergenic Intergenic -19620 NM_001201550 10877 Hs.710100 NM_006684 ENSG00000134365 CFHR4 CFHL4|FHR-4|FHR4 complement factor H related 4 protein-coding 650-119 chr7 52613752 52614052 + 4 NA Intergenic Intergenic -421731 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 513-31 chr10 64144437 64144681 + 4 NA Intergenic Intergenic -622669 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 426-145 chr2 143191559 143191803 + 4 NA intron (NM_018460, intron 2 of 13) intron (NM_018460, intron 2 of 13) 62262 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 695-30 chr13 55465415 55465595 + 4 NA Intergenic Intergenic 291051 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 676-44 chr17 71494296 71494622 + 4 NA Intergenic Intergenic -292280 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 625-64 chr22 35253269 35253441 + 4 NA Intergenic Intergenic -4138 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 593-129 chr7 682268 682572 + 4 NA intron (NM_001164760, intron 2 of 10) FLAM_C|SINE|Alu 30104 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 732-99 chr9 73472457 73472705 + 4 NA Intergenic Intergenic 320716 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 660-111 chr8 131681204 131681473 + 4 NA Intergenic Intergenic -222755 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 736-34 chr19 52040117 52040437 + 4 NA intron (NM_001322284, intron 4 of 4) intron (NM_001322284, intron 4 of 4) 8284 NM_001322285 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 1789 chr8 89146721 89147582 + 4 NA Intergenic Intergenic 610560 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 380-147 chr17 13533770 13533939 + 4 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) 9792 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 781-17 chr14 58072843 58073075 + 4 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 79254 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 1042-6 chr13 100334526 100334938 + 4 NA intron (NR_148031, intron 17 of 22) L1MEj|LINE|L1 146283 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 1002-10 chr3 157723520 157724056 + 4 NA Intergenic Intergenic 180444 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 411-99 chr15 36283524 36283706 + 4 NA Intergenic Intergenic -296011 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 525-94 chr17 73018259 73018424 + 4 NA intron (NM_001352692, intron 4 of 9) AluSx1|SINE|Alu 74347 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 674-93 chr7 27619736 27620047 + 4 NA intron (NR_122122, intron 2 of 2) L1M2|LINE|L1 3917 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 926-3 chr1 192688948 192689268 + 4 NA Intergenic L2a|LINE|L2 -27220 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 327-126 chr12 110962556 110962718 + 4 NA Intergenic Intergenic -4819 NR_135001 105369980 Hs.564357 NR_135001 ENSG00000258240 LOC105369980 - uncharacterized LOC105369980 ncRNA 755-76 chrX 96644720 96644982 + 4 NA Intergenic Intergenic -39812 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 612-121 chr6 44915088 44915290 + 4 NA intron (NM_001350324, intron 10 of 11) intron (NM_001350324, intron 10 of 11) 282581 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 649-66 chr22 50122539 50122736 + 4 NA intron (NM_018995, intron 10 of 26) L1MEc|LINE|L1 -24418 NM_001164106 54456 Hs.62880 NM_018995 ENSG00000073146 MOV10L1 CHAMP|DJ402G11.8 Mov10 like RISC complex RNA helicase 1 protein-coding 859-4 chr11 40835315 40835720 + 4 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -542387 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1023-13 chr2 136582205 136582770 + 4 NA Intergenic L4_A_Mam|LINE|RTE-X -183058 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 902-8 chr12 47926071 47926364 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR -21186 NM_001364085 7421 Hs.524368 NM_000376 ENSG00000111424 VDR NR1I1|PPP1R163 vitamin D receptor protein-coding 836-65 chr8 139515050 139515410 + 4 NA Intergenic Intergenic 187893 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 676-58 chr2 79196276 79196501 + 4 NA Intergenic LTR37A|LTR|ERV1 -36635 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 609-86 chr4 33772869 33773051 + 4 NA Intergenic Intergenic 266933 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 934-29 chr7 46820680 46821057 + 4 NA Intergenic L1HS|LINE|L1 -123746 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 488-80 chr14 70616323 70616472 + 4 NA intron (NR_110071, intron 2 of 2) L1MA6|LINE|L1 -15707 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 619-43 chr14 57513011 57513311 + 4 NA Intergenic L1ME2|LINE|L1 -19304 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 557-6 chr1 60215590 60215757 + 4 NA Intergenic Intergenic -141903 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 892-37 chr8 77843611 77843852 + 4 NA Intergenic Intergenic 393034 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 689-42 chr19 30638890 30639188 + 4 NA intron (NM_001352260, intron 4 of 5) L1MEg|LINE|L1 266655 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 774-95 chr9 98526802 98527090 + 4 NA intron (NM_005458, intron 3 of 18) L1M5|LINE|L1 181989 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 608-51 chr16 68478625 68478893 + 4 NA Intergenic Intergenic -30251 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 463-95 chr15 36121253 36121385 + 4 NA Intergenic Intergenic 194463 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 673-119 chr8 64947984 64948294 + 4 NA Intergenic L1M3d|LINE|L1 -149402 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 472-276 chr6 92523049 92523245 + 4 NA Intergenic L1M4b|LINE|L1 -832719 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 910-31 chr4 109338591 109338939 + 4 NA Intergenic L1MEc|LINE|L1 35730 NR_160939 645078 Hs.518784 NM_001039778 ZCCHC23 - zinc finger CCHC-type containing 23 ncRNA 1293-5 chr3 151521269 151521962 + 4 NA Intergenic L1PA14|LINE|L1 44380 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 668-24 chr14 31700048 31700335 + 4 NA intron (NR_120408, intron 6 of 9) intron (NR_120408, intron 6 of 9) -14378 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 669-32 chr15 83641038 83641366 + 4 NA Intergenic L1MA8|LINE|L1 -12921 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 724-34 chr2 62434319 62434655 + 4 NA Intergenic Intergenic 71708 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 446-122 chr17 75386563 75386689 + 4 NA intron (NM_002086, intron 2 of 5) intron (NM_002086, intron 2 of 5) 19052 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 903-18 chr19 37122995 37123436 + 4 NA intron (NM_001329519, intron 4 of 4) L2|LINE|L2 44782 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 950-3 chr1 163492661 163493030 + 4 NA Intergenic L1M3e|LINE|L1 -69654 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 689-71 chr4 92578766 92579085 + 4 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 274526 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 574-152 chr6 65600843 65601037 + 4 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -21136 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 938-13 chr2 33686508 33686829 + 4 NA Intergenic L1M4c|LINE|L1 -20218 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 1808 chr11 50397349 50398197 + 4 NA Intergenic ALR/Alpha|Satellite|centr -11374 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 552-35 chr11 93092048 93092203 + 4 NA Intergenic Intergenic 105301 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 709-56 chr3 110246881 110247184 + 4 NA Intergenic Intergenic 644204 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 830-4 chr10 39305566 39305963 + 4 NA Intergenic ALR/Alpha|Satellite|centr 609168 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 506-99 chr16 3229344 3229564 + 4 NA intron (NM_198088, intron 4 of 4) L1M4|LINE|L1 5704 NM_198088 7752 Hs.632222 NM_003454 ENSG00000010539 ZNF200 - zinc finger protein 200 protein-coding 654-44 chr16 52378037 52378253 + 4 NA Intergenic MIR|SINE|MIR 119581 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 1110-3 chr11 58468227 58468723 + 4 NA Intergenic Intergenic -28302 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 601-41 chr14 75612236 75612506 + 4 NA intron (NM_001195283, intron 1 of 9) intron (NM_001195283, intron 1 of 9) 6831 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 693-6 chr1 90784043 90784328 + 4 NA intron (NR_135038, intron 2 of 2) MIR|SINE|MIR 51976 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 358-327 chr4 33971606 33971738 + 4 NA intron (NR_125902, intron 2 of 4) intron (NR_125902, intron 2 of 4) 68221 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 996-25 chr8 115167428 115167882 + 4 NA Intergenic Tigger3a|DNA|TcMar-Tigger 500358 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 845-3 chr10 9603216 9603537 + 4 NA Intergenic AluSp|SINE|Alu -307783 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 614-42 chr18 5806837 5807028 + 4 NA Intergenic AluSx|SINE|Alu -33763 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 629-105 chr5 156646496 156646657 + 4 NA intron (NM_001128209, intron 5 of 7) intron (NM_001128209, intron 5 of 7) -203719 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 1010-8 chr5 26215381 26215722 + 4 NA Intergenic L1ME1|LINE|L1 823035 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 445-169 chr3 17928670 17928916 + 4 NA Intergenic Intergenic -33759 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 751-15 chr12 112889292 112889591 + 4 NA intron (NR_145127, intron 18 of 22) intron (NR_145127, intron 18 of 22) -17336 NM_002534 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 962-21 chr7 86000870 86001407 + 4 NA Intergenic L1MA5|LINE|L1 580016 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 1072-19 chr7 49946435 49946982 + 4 NA intron (NM_001159878, intron 7 of 7) L1M1|LINE|L1 146538 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 561-117 chr21 20487210 20487358 + 4 NA Intergenic Intergenic -228599 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 622-143 chr8 125748032 125748240 + 4 NA Intergenic MIRb|SINE|MIR 203061 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 772-5 chr1 105628893 105629297 + 4 NA Intergenic Intergenic -10160 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 416-307 chr7 42820636 42820820 + 4 NA Intergenic L1MA9|LINE|L1 91115 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 763-14 chr12 132927959 132928292 + 4 NA intron (NM_183238, intron 4 of 4) intron (NM_183238, intron 4 of 4) 28181 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 860-43 chr6 52450117 52450484 + 4 NA intron (NR_033327, intron 3 of 9) L1PREC2|LINE|L1 29292 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 1167-6 chr14 41515067 41515554 + 4 NA Intergenic Intergenic -91546 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1397-4 chr8 103260922 103261571 + 4 NA intron (NR_148216, intron 1 of 1) L1M4|LINE|L1 -37248 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 615-119 chr6 38472526 38472723 + 4 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -8972 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 942-8 chr12 133206155 133206665 + 4 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 24915 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 529-112 chr2 126191866 126192022 + 4 NA Intergenic Intergenic -73959 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 648-71 chr2 104636390 104636592 + 4 NA Intergenic Intergenic 121228 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 469-217 chr5 42515452 42515619 + 4 NA intron (NM_001242400, intron 2 of 10) intron (NM_001242400, intron 2 of 10) -32508 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 615-135 chr8 48312161 48312390 + 4 NA Intergenic L1MA9|LINE|L1 -239292 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 329-449 chr5 28632286 28632460 + 4 NA Intergenic Intergenic -294497 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 1370-8 chr7 45954613 45955365 + 4 NA Intergenic L1ME2|LINE|L1 -33717 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 717-91 chr9 91707271 91707484 + 4 NA Intergenic AluYh3|SINE|Alu -71032 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 667-37 chr17 14898604 14898854 + 4 NA Intergenic Intergenic -116076 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 766-33 chr2 35534667 35535032 + 4 NA Intergenic Intergenic 63444 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 1083-11 chr4 64287065 64287475 + 4 NA intron (NM_001363796, intron 9 of 11) Charlie4a|DNA|hAT-Charlie 122180 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 710-85 chr7 18813892 18814152 + 4 NA intron (NM_058176, intron 16 of 22) intron (NM_058176, intron 16 of 22) 303614 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 951-18 chr2 126725533 126726109 + 4 NA Intergenic L1M4|LINE|L1 69663 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 883-11 chr16 58372128 58372483 + 4 NA Intergenic L1MD1|LINE|L1 -20166 NM_022770 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 804-7 chr10 111889113 111889399 + 4 NA Intergenic Intergenic 294509 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 846-49 chr6 56271473 56271944 + 4 NA intron (NM_001318752, intron 1 of 28) THE1D-int|LTR|ERVL-MaLR -24128 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 705-47 chr19 39223657 39223863 + 4 NA Intergenic AluJb|SINE|Alu -19494 NM_001080468 342898 Hs.124123 NM_001080468 ENSG00000179751 SYCN INSSA1|SYL syncollin protein-coding 712-93 chr8 30203217 30203638 + 4 NA Intergenic AluSp|SINE|Alu 47058 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 505-81 chr14 51407907 51408155 + 4 NA Intergenic L1PREC2|LINE|L1 -10896 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 912-10 chr12 8584247 8584529 + 4 NA Intergenic LTR13|LTR|ERVK 28471 NM_020661 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 1230-4 chr19 37488848 37489397 + 4 NA TTS (NM_001321992) TTS (NM_001321992) -17817 NM_001013659 390927 Hs.568010 NM_001013659 ENSG00000188227 ZNF793 - zinc finger protein 793 protein-coding 821-14 chr12 119072864 119073161 + 4 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 91471 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 468-95 chr15 96156522 96156734 + 4 NA intron (NR_125738, intron 3 of 4) (AT)n|Simple_repeat|Simple_repeat -28787 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 697-47 chr20 6283963 6284318 + 4 NA Intergenic MER21B|LTR|ERVL -142592 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 981-5 chr12 125980548 125980987 + 4 NA intron (NR_034132, intron 1 of 5) intron (NR_034132, intron 1 of 5) 2607 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 918-30 chr9 3266104 3266439 + 4 NA exon (NM_001282116, exon 12 of 17) exon (NM_001282116, exon 12 of 17) 84682 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 397-253 chr5 42298402 42298667 + 4 NA Intergenic Intergenic -123189 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 778-59 chr7 5092760 5093071 + 4 NA Intergenic L1M4|LINE|L1 20855 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 744-38 chr2 239874629 239874840 + 4 NA Intergenic Intergenic 68360 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 680-97 chr5 98256497 98256783 + 4 NA Intergenic L1M1|LINE|L1 -95401 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 781-45 chr3 164388890 164389215 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -217496 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 398-346 chr8 53038034 53038224 + 4 NA Intergenic L1MC3|LINE|L1 98221 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 611-149 chr8 112018216 112018415 + 4 NA Intergenic L1PA16|LINE|L1 -625178 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 614-147 chr9 35999780 36000061 + 4 NA Intergenic Intergenic -36993 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 1122-5 chr12 133140941 133141539 + 4 NA intron (NM_015394, intron 1 of 4) L1MEc|LINE|L1 10613 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 887-15 chr2 10018196 10018702 + 4 NA Intergenic Intergenic 24952 NR_135558 101929882 Hs.405158 NR_135558 LOC101929882 - uncharacterized LOC101929882 ncRNA 986-26 chr4 78102115 78102425 + 4 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 44700 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 695-101 chr7 122447164 122447407 + 4 NA intron (NM_001167940, intron 15 of 29) HAL1|LINE|L1 -142535 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 598-153 chr9 99551750 99552000 + 4 NA Intergenic MIRc|SINE|MIR -176618 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 696-108 chr8 118198268 118198614 + 4 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -86622 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 623-2 chr1 30558081 30558327 + 4 NA Intergenic L1MEc|LINE|L1 -160568 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 721-44 chr20 9008210 9008523 + 4 NA Intergenic L1MC5|LINE|L1 -60688 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 1098-8 chr7 46469193 46469669 + 4 NA Intergenic HUERS-P3-int|LTR|ERV1 227691 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 602-63 chr2 118172467 118172718 + 4 NA Intergenic MIRb|SINE|MIR 13794 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 889-22 chr2 193123079 193123583 + 4 NA Intergenic Intergenic 373486 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 705-106 chr9 17137705 17137954 + 4 NA intron (NM_001286984, intron 1 of 2) intron (NM_001286984, intron 1 of 2) 2789 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 1496 chr2 230936292 230937032 + 4 NA Intergenic Intergenic -11420 NM_005683 9290 Hs.114545 NM_005683 ENSG00000135898 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 535-262 chrX 50783210 50783508 + 4 NA intron (NR_027121, intron 1 of 9) L1ME1|LINE|L1 30685 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 610-153 chr6 160592126 160592403 + 4 NA intron (NM_005577, intron 22 of 38) L1MEf|LINE|L1 71995 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 585-36 chr13 106979060 106979258 + 4 NA Intergenic MER5A|DNA|hAT-Charlie 325279 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 779-32 chr2 114366976 114367332 + 4 NA Intergenic Intergenic -75487 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 520-236 chr5 63034755 63034966 + 4 NA Intergenic Intergenic 456041 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 970-9 chr15 71819570 71820080 + 4 NA Intergenic LTR33B|LTR|ERVL 9271 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 478-161 chr20 39169641 39169844 + 4 NA Intergenic MIR|SINE|MIR 55006 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 1023-20 chr5 150983793 150984390 + 4 NA Intergenic Intergenic -36500 NM_002084 2878 Hs.386793 NM_002084 ENSG00000211445 GPX3 GPx-P|GSHPx-3|GSHPx-P glutathione peroxidase 3 protein-coding 1137-6 chr22 28376434 28377071 + 4 NA intron (NM_001145418, intron 2 of 22) L1MEc|LINE|L1 -83117 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 420-251 chr6 78250203 78250385 + 4 NA Intergenic Intergenic 289015 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 699-97 chr7 33856128 33856389 + 4 NA Intergenic MIRb|SINE|MIR -48657 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 541-13 chr10 10479728 10479927 + 4 NA intron (NM_001326317, intron 1 of 14) MIRb|SINE|MIR 17277 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 478-114 chr17 42746778 42746934 + 4 NA Intergenic L1MC4a|LINE|L1 -1816 NM_001321079 2145 Hs.194669 NM_001991 ENSG00000108799 EZH1 KMT6B enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 698-73 chr6 23694237 23694469 + 4 NA Intergenic MIRb|SINE|MIR -431862 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 777-58 chr5 118769935 118770389 + 4 NA Intergenic Intergenic 173974 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 665-78 chr5 109490746 109491178 + 4 NA Intergenic MIRb|SINE|MIR -80988 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 607-111 chr4 175865310 175865637 + 4 NA intron (NR_048571, intron 1 of 5) L1ME1|LINE|L1 -52359 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 909-23 chr5 127997124 127997492 + 4 NA intron (NR_152803, intron 1 of 1) intron (NR_152803, intron 1 of 1) 85867 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 1092 chr1 40526116 40526557 + 4 NA Intergenic L1MA5A|LINE|L1 -5301 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 600-141 chr9 38167922 38168183 + 4 NA Intergenic Intergenic -98825 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 538-143 chr22 26207099 26207326 + 4 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 37738 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 668-62 chr22 27332497 27332709 + 4 NA Intergenic Intergenic 21952 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 486-109 chr17 5180722 5181012 + 4 NA 3' UTR (NM_032530, exon 2 of 2) 3' UTR (NM_032530, exon 2 of 2) 11001 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 570-29 chr10 75446383 75446612 + 4 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 14873 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 1773-2 chr2 49733813 49734711 + 4 NA Intergenic Intergenic 239941 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 432-91 chr16 50487577 50487786 + 4 NA Intergenic Intergenic -60715 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 686-54 chr21 30265273 30265584 + 4 NA Intergenic L1MA2|LINE|L1 17522 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 800-14 chr11 13611750 13612115 + 4 NA Intergenic MIR|SINE|MIR -56736 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 816-38 chr5 52049216 52049490 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 41322 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 1001 chr1 236067752 236068231 + 4 NA Intergenic Intergenic -2901 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 662-18 chr12 108000061 108000279 + 4 NA Intergenic L1M2a|LINE|L1 -96399 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 989-2 chr11 116443008 116443472 + 4 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -196182 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 466-282 chr8 132723254 132723516 + 4 NA intron (NM_001145153, intron 5 of 8) intron (NM_001145153, intron 5 of 8) 37197 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 902-28 chr4 30590125 30590532 + 4 NA Intergenic L2a|LINE|L2 -130041 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 672-37 chr16 49913913 49914152 + 4 NA Intergenic Intergenic -56113 NM_001271620 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 784-2 chr1 40427157 40427547 + 4 NA Intergenic AluY|SINE|Alu -22712 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 630-97 chr4 77552206 77552507 + 4 NA intron (NM_006419, intron 1 of 4) L1PA15-16|LINE|L1 40603 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 312-419 chr5 86175072 86175191 + 4 NA Intergenic Intergenic -107313 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 265-350 chr6 161867352 161867446 + 4 NA intron (NM_004562, intron 6 of 11) MER58B|DNA|hAT-Charlie 396422 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 498-97 chr16 4063792 4063999 + 4 NA intron (NM_001116, intron 2 of 10) L1M4|LINE|L1 52547 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 771-80 chr7 62894197 62894597 + 4 NA Intergenic ALR/Alpha|Satellite|centr 409659 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1182 chr1 112098026 112098703 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 107828 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 744-13 chr11 83568618 83568827 + 4 NA intron (NM_001142699, intron 19 of 27) L2c|LINE|L2 113703 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 1262-4 chr15 59181778 59182247 + 4 NA intron (NM_004998, intron 18 of 27) intron (NM_004998, intron 18 of 27) -10750 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 757-13 chr14 37959498 37959855 + 4 NA Intergenic Intergenic -57552 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 530-241 chr7 110314876 110315149 + 4 NA Intergenic MER67D|LTR|ERV1 -354799 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 572-48 chr13 51022994 51023239 + 4 NA intron (NR_003923, intron 9 of 16) L1MB3|LINE|L1 43041 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 1327 chr10 76705501 76705888 + 4 NA Intergenic L1M1|LINE|L1 -182350 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 447-178 chr3 123836813 123837035 + 4 NA intron (NM_001321309, intron 2 of 32) intron (NM_001321309, intron 2 of 32) 47408 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 710-63 chr3 54036429 54036767 + 4 NA Intergenic Intergenic -85954 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 1016-20 chr6 38471312 38471817 + 4 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -10032 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 540-152 chr3 178918092 178918351 + 4 NA Intergenic AluSc8|SINE|Alu -57816 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 835-42 chr4 47988744 47989121 + 4 NA intron (NM_000087, intron 2 of 10) MER8|DNA|TcMar-Tigger -7399 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 993-5 chr11 50519062 50519616 + 4 NA Intergenic ALR/Alpha|Satellite|centr 110192 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 612-85 chr3 5778194 5778466 + 4 NA Intergenic L1MA9|LINE|L1 -528075 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 652-15 chr10 27855251 27855536 + 4 NA intron (NM_001290021, intron 12 of 13) intron (NM_001290021, intron 12 of 13) -109574 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 957-32 chr8 122295615 122296150 + 4 NA Intergenic Intergenic 272762 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 607-83 chr2 136490831 136491036 + 4 NA Intergenic Intergenic -274612 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 893-11 chr12 5844285 5844783 + 4 NA intron (NM_001278596, intron 4 of 25) intron (NM_001278596, intron 4 of 25) 100725 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 316-183 chr15 56424239 56424360 + 4 NA intron (NM_198524, intron 10 of 12) L1MB2|LINE|L1 40838 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 406-18 chr1 190492089 190492269 + 4 NA Intergenic Intergenic 13628 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 770-36 chr2 67583994 67584379 + 4 NA Intergenic L1PA15-16|LINE|L1 186853 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 1072-8 chr17 69974802 69975241 + 4 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 13314 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 1065-5 chr11 97654396 97654710 + 4 NA Intergenic Intergenic 1146128 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1052-6 chr12 129981828 129982542 + 4 NA Intergenic Intergenic 60157 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 912-11 chr12 16232010 16232401 + 4 NA intron (NM_001170798, intron 5 of 8) HAL1|LINE|L1 45480 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 459-142 chr2 103657887 103658096 + 4 NA Intergenic Intergenic -673562 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 804-51 chr5 4413026 4413397 + 4 NA Intergenic Intergenic -360270 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 818-22 chr18 61653509 61653892 + 4 NA Intergenic Intergenic -94476 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 928-25 chr5 131076401 131076838 + 4 NA Intergenic Intergenic 88637 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 779-51 chr7 64995895 64996253 + 4 NA intron (NM_001007253, intron 1 of 1) HERV3-int|LTR|ERV1 -5038 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 324-516 chr8 21644537 21644655 + 4 NA Intergenic L1M5|LINE|L1 144279 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 1326-2 chr10 72978927 72979549 + 4 NA Intergenic L1MA5A|LINE|L1 -24432 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 898-28 chr5 26270282 26270837 + 4 NA Intergenic L1ME3|LINE|L1 768027 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 727-77 chr7 78878034 78878342 + 4 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -130800 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 1051 chr1 62503086 62503396 + 4 NA intron (NM_001367561, intron 37 of 49) L1M8|LINE|L1 66192 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 786 chr1 51070356 51070722 + 4 NA Intergenic MIRb|SINE|MIR 10521 NR_106754 102466656 NR_106754 ENSG00000275816 MIR6500 hsa-mir-6500 microRNA 6500 ncRNA 405-252 chr5 88449801 88449978 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR -10799 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 668-103 chr8 36892039 36892316 + 4 NA intron (NM_001031836, intron 19 of 26) L1M4|LINE|L1 107803 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 746-71 chr7 49666687 49667041 + 4 NA Intergenic Intergenic -106774 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 517-233 chr6 27399603 27399808 + 4 NA intron (NM_001322293, intron 2 of 2) MIR3|SINE|MIR 10987 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 516-105 chr18 5163760 5163985 + 4 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 33385 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 290-228 chr2 181745261 181745384 + 4 NA Intergenic MIR3|SINE|MIR -64657 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 366-185 chr2 5396258 5396371 + 4 NA Intergenic Intergenic 294804 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 605-121 chr8 107032445 107032822 + 4 NA Intergenic L1MA8|LINE|L1 -262389 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 624-39 chr15 59800967 59801168 + 4 NA Intergenic L1M7|LINE|L1 -111747 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 402-169 chr2 155581498 155581615 + 4 NA Intergenic L1MA3|LINE|L1 673375 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 418-310 chrX 57989059 57989224 + 4 NA Intergenic L1M2a|LINE|L1 -78508 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 2513 chr8 130989047 130990018 + 4 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 51377 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 668-118 chrX 63777218 63777588 + 4 NA intron (NM_001330495, intron 1 of 10) THE1C|LTR|ERVL-MaLR 7811 NM_001330495 23229 Hs.54697 NM_015185 ENSG00000131089 ARHGEF9 COLLYBISTIN|EIEE8|HPEM-2|PEM-2|PEM2 Cdc42 guanine nucleotide exchange factor 9 protein-coding 824-38 chr5 35961889 35962140 + 4 NA 3' UTR (NM_001171873, exon 6 of 6) 3' UTR (NM_001171873, exon 6 of 6) 23213 NR_104630 100506406 Hs.116864 NR_104630 ENSG00000249748 LOC100506406 - uncharacterized LOC100506406 ncRNA 701-15 chr12 25498085 25498396 + 4 NA intron (NM_001352234, intron 8 of 8) intron (NM_001352234, intron 8 of 8) 55043 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 677-84 chr8 120979772 120980115 + 4 NA Intergenic MIR|SINE|MIR -167897 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 633-103 chr6 38801299 38801520 + 4 NA intron (NM_001371, intron 20 of 91) HAL1|LINE|L1 86098 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 1125-11 chr3 83771991 83772539 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR 1097310 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 671-32 chr14 65900470 65900692 + 4 NA Intergenic L1MC4a|LINE|L1 429479 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 513-149 chr2 155668591 155668788 + 4 NA Intergenic Intergenic 586242 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 683-60 chr4 42936386 42936624 + 4 NA intron (NM_001080476, intron 1 of 3) L1MC3|LINE|L1 43239 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 844-20 chr15 69830075 69830478 + 4 NA Intergenic Intergenic -4958 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 638-101 chr4 32395651 32395850 + 4 NA Intergenic Intergenic 44712 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 891-32 chr5 131846285 131846697 + 4 NA intron (NM_001303622, intron 11 of 12) L1MB7|LINE|L1 -49474 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 891-27 chr5 8820459 8820824 + 4 NA Intergenic L1MC1|LINE|L1 -19091 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 1034-14 chr20 43041056 43041680 + 4 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 72625 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 730-14 chr12 37976396 37976609 + 4 NA Intergenic ALR/Alpha|Satellite|centr -340272 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 380-385 chr8 49003763 49003938 + 4 NA Intergenic L1PA2|LINE|L1 -50486 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 858-14 chr14 44297654 44297891 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 209511 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1092-16 chr7 48328201 48328607 + 4 NA intron (NM_152701, intron 27 of 61) intron (NM_152701, intron 27 of 61) 156946 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 460-101 chr16 74805406 74805580 + 4 NA Intergenic L1M4|LINE|L1 -30673 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 833-4 chr11 88228491 88228822 + 4 NA Intergenic L1PB4|LINE|L1 52154 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 644-101 chr8 60109887 60110196 + 4 NA Intergenic L1ME3Cz|LINE|L1 171359 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 413-303 chr8 80655921 80656213 + 4 NA intron (NM_001033723, intron 7 of 8) MLT1A|LTR|ERVL-MaLR 169841 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 446-43 chr10 53610025 53610194 + 4 NA Intergenic L1MA4A|LINE|L1 -838409 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 517-290 chr9 79091386 79091624 + 4 NA Intergenic L1ME3Cz|LINE|L1 54161 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 557-203 chr8 121019675 121019928 + 4 NA Intergenic Intergenic -207755 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 801-11 chr13 34185675 34186089 + 4 NA Intergenic Intergenic -162161 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 617-130 chr8 70847719 70847903 + 4 NA Intergenic L1M2|LINE|L1 178472 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 633-131 chrX 78408228 78408462 + 4 NA Intergenic L1ME4b|LINE|L1 -80654 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 628-17 chr1 180383197 180383361 + 4 NA intron (NM_032360, intron 6 of 7) L1MA4A|LINE|L1 55111 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 954-33 chr3 124225856 124226219 + 4 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 93108 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 765-19 chr14 98681374 98681755 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -30049 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 702-60 chr3 2356267 2356579 + 4 NA intron (NM_175607, intron 3 of 24) MER41B|LTR|ERV1 117594 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 935-42 chr8 139538098 139538462 + 4 NA Intergenic Intergenic 164843 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 562-152 chr3 180497322 180497586 + 4 NA Intergenic MamGypLTR2c|LTR|Gypsy 83281 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 748-84 chr8 121295445 121295758 + 4 NA Intergenic Intergenic -343745 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 615-111 chr5 96268168 96268328 + 4 NA intron (NR_130776, intron 1 of 4) L1MA4|LINE|L1 163911 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 928-11 chr19 28925384 28925791 + 4 NA Intergenic Intergenic -39544 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 630-84 chr3 59251765 59252001 + 4 NA Intergenic MIR|SINE|MIR -201851 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 451-159 chr3 179994906 179995060 + 4 NA intron (NM_016559, intron 1 of 14) MLT2A1|LTR|ERVL -20758 NM_001256755 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 554-215 chr9 102906746 102906921 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -88500 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 573-132 chr4 138354088 138354364 + 4 NA intron (NR_051987, intron 1 of 2) AluSx1|SINE|Alu 44515 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 615-74 chr21 22552669 22552839 + 4 NA Intergenic Intergenic 454137 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 500-249 chr6 80338994 80339182 + 4 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 232417 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 741-76 chr8 116112497 116112928 + 4 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 212347 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 526-96 chr17 52308647 52308875 + 4 NA Intergenic Intergenic -81761 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 740-63 chr5 13806011 13806348 + 4 NA intron (NM_001369, intron 47 of 78) intron (NM_001369, intron 47 of 78) 138301 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 665-30 chr14 48524944 48525283 + 4 NA Intergenic L2b|LINE|L2 -730099 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 502-70 chr12 60226728 60226971 + 4 NA Intergenic L1M4c|LINE|L1 537479 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 624-123 chr8 134284325 134284633 + 4 NA Intergenic MER52A|LTR|ERV1 -313592 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 450-81 chr14 57796495 57796644 + 4 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 68430 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 1215-11 chr8 83785109 83785458 + 4 NA Intergenic L4_A_Mam|LINE|RTE-X 381525 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 551-68 chr17 16622480 16622686 + 4 NA exon (NM_020787, exon 6 of 6) exon (NM_020787, exon 6 of 6) 31267 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 630-14 chr11 50552465 50552731 + 4 NA Intergenic ALR/Alpha|Satellite|centr 143451 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 834-28 chr3 8345956 8346286 + 4 NA intron (NR_033378, intron 3 of 3) L1ME1|LINE|L1 155537 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 490-316 chr9 96820221 96820494 + 4 NA intron (NM_001001662, intron 5 of 5) intron (NM_001001662, intron 5 of 5) 34157 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 723-76 chr8 84986543 84986975 + 4 NA Intergenic L1ME3B|LINE|L1 -120479 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 400-221 chr3 102871203 102871375 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 436274 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 688-23 chr11 55607236 55607438 + 4 NA Intergenic Intergenic -2939 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 874-26 chr6 55900500 55900955 + 4 NA Intergenic Intergenic -25137 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 565-121 chr3 125069304 125069621 + 4 NA Intergenic MamRTE1|LINE|RTE-BovB -13465 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 1666-3 chr20 58530271 58531118 + 4 NA intron (NR_034147, intron 5 of 6) L1ME1|LINE|L1 -15295 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 654-99 chr5 117633756 117634039 + 4 NA Intergenic L1MEf|LINE|L1 -96464 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 592-166 chr8 621155 621347 + 4 NA intron (NM_001303100, intron 5 of 5) L1MB7|LINE|L1 -75470 NM_175075 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 871-39 chr8 121120178 121120605 + 4 NA Intergenic Intergenic -308345 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 629-42 chr14 69867214 69867548 + 4 NA Intergenic LTR16C|LTR|ERVL -12035 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 376-152 chr18 41374944 41375150 + 4 NA Intergenic Intergenic 145630 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 574-142 chr5 109406399 109406624 + 4 NA intron (NM_014819, intron 1 of 9) L1ME1|LINE|L1 3463 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 665-66 chr4 43625336 43625661 + 4 NA Intergenic Intergenic -132955 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 536-250 chr9 72182386 72182559 + 4 NA intron (NM_001351571, intron 1 of 13) L1MC4|LINE|L1 33032 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 1053-8 chr14 66903454 66903991 + 4 NA intron (NM_001024218, intron 5 of 21) L1MA4|LINE|L1 -285718 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 620-76 chr20 54426930 54427099 + 4 NA Intergenic Intergenic -48579 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 770-76 chrX 87938148 87938371 + 4 NA Intergenic HAL1|LINE|L1 420457 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 603-160 chr7 104701063 104701234 + 4 NA intron (NM_199000, intron 1 of 2) HAL1|LINE|L1 102944 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 698-19 chr12 37927048 37927339 + 4 NA Intergenic ALR/Alpha|Satellite|centr -389581 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 309-361 chr3 118899334 118899441 + 4 NA Intergenic L1MD2|LINE|L1 -43689 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 562-52 chr12 128047845 128047991 + 4 NA Intergenic LTR16A|LTR|ERVL -20752 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 670-129 chr8 130825650 130825951 + 4 NA intron (NM_001115, intron 12 of 17) LTR86C|LTR|ERVL 215109 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 750-64 chr6 126229720 126230036 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie -109911 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 694-39 chr14 70057450 70057795 + 4 NA intron (NM_033262, intron 3 of 7) intron (NM_033262, intron 3 of 7) 22595 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 838-25 chr4 31342492 31342923 + 4 NA Intergenic L1MB7|LINE|L1 -163837 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 642-82 chr4 65800414 65800711 + 4 NA Intergenic Intergenic -130067 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 652-66 chr2 63278375 63278660 + 4 NA intron (NR_148704, intron 14 of 18) L1PB1|LINE|L1 -158975 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 701-97 chr8 112076448 112076875 + 4 NA Intergenic L1PB3|LINE|L1 -566832 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 494-311 chr9 73735459 73735725 + 4 NA Intergenic L2a|LINE|L2 583727 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 896-40 chr8 114040015 114040312 + 4 NA Intergenic L1MA4A|LINE|L1 -603224 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 672-15 chr11 7271901 7272111 + 4 NA intron (NM_175733, intron 1 of 6) intron (NM_175733, intron 1 of 6) 20102 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 235-312 chr6 102239208 102239323 + 4 NA Intergenic Intergenic 840280 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 696-62 chr2 220923521 220923770 + 4 NA Intergenic Intergenic 648659 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 1088-11 chr7 110553753 110554182 + 4 NA Intergenic Intergenic -537039 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 866-23 chr17 61178143 61178586 + 4 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 189340 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 871-26 chr5 3226152 3226574 + 4 NA Intergenic Intergenic 48528 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 883-13 chr17 74076959 74077274 + 4 NA Intergenic Intergenic -126562 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 651-17 chr10 52809893 52810098 + 4 NA Intergenic Intergenic -38295 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 593-66 chr19 29217947 29218228 + 4 NA Intergenic Intergenic -4936 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 582-82 chr2 225945903 225946079 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -196803 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 618-71 chr20 22897570 22897818 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR -137726 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 1267-6 chr2 80968749 80969489 + 4 NA Intergenic L1PA16|LINE|L1 497827 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1071-23 chr7 43038300 43038793 + 4 NA Intergenic Intergenic -74101 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 914-6 chr11 58377326 58377777 + 4 NA Intergenic L1MA5|LINE|L1 -18482 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 696-93 chr7 2296313 2296765 + 4 NA intron (NM_013321, intron 1 of 10) L1PB|LINE|L1 17902 NM_013321 29886 Hs.584900 NM_013321 ENSG00000106266 SNX8 Mvp1 sorting nexin 8 protein-coding 502-169 chr3 1956593 1956773 + 4 NA Intergenic L2a|LINE|L2 -142120 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 754-55 chr3 145353192 145353572 + 4 NA Intergenic Intergenic 715803 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 586-167 chr9 105534500 105534716 + 4 NA intron (NM_001287191, intron 11 of 13) intron (NM_001287191, intron 11 of 13) 14784 NR_104269 26134 Hs.113150 NR_104269 ENSG00000229419 RALGAPA1P1 GARNL2|GARNL2P|RALGAPA1P|bA235C23.1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudo 572-186 chr8 138985489 138985735 + 4 NA Intergenic L1ME3|LINE|L1 -71571 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 1000-26 chr8 87567479 87567876 + 4 NA Intergenic Intergenic 306338 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 713 chr1 18033718 18034058 + 4 NA Intergenic MIRc|SINE|MIR -31769 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 325-240 chr18 61239059 61239225 + 4 NA Intergenic Intergenic -94288 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 778-32 chr18 62669632 62670003 + 4 NA Intergenic L1M4|LINE|L1 -45724 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 827-47 chr5 178918552 178918875 + 4 NA intron (NM_030613, intron 4 of 4) intron (NM_030613, intron 4 of 4) -22485 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 1697 chr6 38474560 38475314 + 4 NA intron (NM_001172418, intron 5 of 10) L1ME4a|LINE|L1 -6659 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 501-139 chr21 15901251 15901500 + 4 NA Intergenic L1MA2|LINE|L1 -169113 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 714-65 chr6 99045385 99045652 + 4 NA Intergenic Intergenic -79091 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 863-24 chr2 211024574 211024994 + 4 NA Intergenic L1PB1|LINE|L1 407213 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 821-46 chr5 57644745 57645077 + 4 NA Intergenic L1PB4|LINE|L1 -5749 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 488-62 chr12 30610778 30611026 + 4 NA Intergenic L1M4|LINE|L1 66342 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 642-100 chr6 11819559 11819741 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -40603 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 615-98 chr4 124835696 124835908 + 4 NA Intergenic L1MCc|LINE|L1 -123070 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 1325-4 chr5 58549267 58550102 + 4 NA intron (NR_109904, intron 1 of 3) AluY|SINE|Alu 8559 NR_109904 101928600 Hs.694699 NR_109904 ENSG00000250127 LINC02108 - long intergenic non-protein coding RNA 2108 ncRNA 972-20 chr5 87206542 87206921 + 4 NA intron (NR_105018, intron 2 of 3) (TACA)n|Simple_repeat|Simple_repeat 32470 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 872-24 chr18 6069848 6070237 + 4 NA intron (NM_173464, intron 16 of 19) L1ME3A|LINE|L1 -174088 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 606-12 chr1 210803423 210803673 + 4 NA intron (NM_002238, intron 8 of 10) MER96B|DNA|hAT-Tip100 329826 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 1005-12 chr2 215642672 215643150 + 4 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -75132 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 360-460 chr8 81214514 81214636 + 4 NA Intergenic L1ME1|LINE|L1 -65961 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 737-54 chr3 4100709 4100999 + 4 NA Intergenic L1MA6|LINE|L1 -202450 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 520-122 chr17 73672582 73672800 + 4 NA Intergenic L1PB2|LINE|L1 -28246 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 438-131 chr2 124137482 124137638 + 4 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 112273 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 583-4 chr1 79948076 79948312 + 4 NA Intergenic Intergenic -587561 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 308-64 chr10 74143713 74143797 + 4 NA intron (NM_207012, intron 1 of 9) MIRb|SINE|MIR 7073 NR_135191 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 414-170 chr2 163066047 163066276 + 4 NA Intergenic MIR|SINE|MIR -227394 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 916-19 chr3 28794123 28794394 + 4 NA Intergenic Intergenic 218980 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 602-73 chr2 240219117 240219284 + 4 NA Intergenic Intergenic -78542 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 907-20 chr3 116429216 116429513 + 4 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 16123 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 439-19 chr1 246806805 246807032 + 4 NA Intergenic L1ME3|LINE|L1 17301 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 509-262 chr8 131239989 131240165 + 4 NA Intergenic Intergenic -199168 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 355-151 chr14 50750131 50750279 + 4 NA intron (NM_016350, intron 20 of 28) L1MC4a|LINE|L1 -71592 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 1422 chr10 32541695 32542142 + 4 NA intron (NR_109826, intron 11 of 16) L1PA15|LINE|L1 95778 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 661-34 chr16 73375259 73375559 + 4 NA Intergenic L1MC5|LINE|L1 -11396 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 886-25 chr4 60800669 60801253 + 4 NA Intergenic Intergenic -121658 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 766-3 chr1 238524545 238524886 + 4 NA Intergenic Intergenic -38698 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 1050-2 chr1 118665255 118665678 + 4 NA Intergenic L1PA16|LINE|L1 322877 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 1015-16 chr7 40846576 40847060 + 4 NA intron (NM_024728, intron 14 of 14) MIRb|SINE|MIR 133121 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 615-87 chr3 154495008 154495248 + 4 NA Intergenic Intergenic -64938 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 712-35 chr18 402450 402663 + 4 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 98145 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 896-23 chr3 136654090 136654453 + 4 NA intron (NM_005862, intron 1 of 33) L1MB3|LINE|L1 98107 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 815-28 chr2 79047489 79047945 + 4 NA Intergenic L1MA2|LINE|L1 22015 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 629-129 chr8 95651993 95652295 + 4 NA intron (NR_038205, intron 2 of 2) L2a|LINE|L2 296204 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 1230 chr1 56708497 56709107 + 4 NA 3' UTR (NM_006252, exon 9 of 9) 3' UTR (NM_006252, exon 9 of 9) -63484 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 638-48 chr15 83325164 83325425 + 4 NA Intergenic Intergenic -40630 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 1433 chr10 116129432 116130109 + 4 NA intron (NM_145793, intron 3 of 8) L1MA4A|LINE|L1 65019 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 690-53 chr2 5075231 5075467 + 4 NA Intergenic Intergenic -419127 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 697-64 chr6 56170493 56170850 + 4 NA non-coding (NR_134850, exon 5 of 31) non-coding (NR_134850, exon 5 of 31) 76909 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 693-86 chr6 17577807 17578117 + 4 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -22340 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 714-39 chr2 164451003 164451186 + 4 NA Intergenic AluSc|SINE|Alu 117401 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 548-60 chr12 133201027 133201260 + 4 NA intron (NM_152943, intron 6 of 6) HAL1|LINE|L1 19648 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 504-38 chr11 69580229 69580397 + 4 NA Intergenic Intergenic -60792 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 964-12 chr19 24340588 24341037 + 4 NA Intergenic ALR/Alpha|Satellite|centr -177365 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 486-214 chr3 166290248 166290407 + 4 NA Intergenic Intergenic -452904 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 1704-2 chr7 61736595 61737473 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1567022 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1557 chr12 112720765 112721389 + 4 NA intron (NM_001347952, intron 1 of 21) MIRb|SINE|MIR -25901 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 726-87 chrX 45396000 45396348 + 4 NA Intergenic L1M3b|LINE|L1 -109214 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 592-131 chr4 155520501 155520693 + 4 NA Intergenic Intergenic -143632 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 820 chr1 75964984 75965325 + 4 NA Intergenic L1MEj|LINE|L1 -32750 NM_080868 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 461-76 chr14 46974703 46974982 + 4 NA intron (NM_001113498, intron 8 of 16) L1MB2|LINE|L1 -323061 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 708-22 chr13 80817061 80817312 + 4 NA Intergenic L1MEc|LINE|L1 -201205 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 1008-4 chr14 59147784 59148250 + 4 NA Intergenic L1ME4a|LINE|L1 -40650 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 760-37 chr2 220292787 220293104 + 4 NA Intergenic Intergenic -386380 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 649-72 chr3 98741885 98742094 + 4 NA intron (NM_001323366, intron 1 of 11) intron (NM_001323366, intron 1 of 11) 8533 NM_001323366 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 362-453 chr8 136828260 136828454 + 4 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 297559 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 925-18 chr2 122583719 122584118 + 4 NA Intergenic L1MB5|LINE|L1 489563 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 692-113 chrX 58300982 58301260 + 4 NA Intergenic Intergenic -390488 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 427-146 chr22 26196767 26196976 + 4 NA intron (NM_001184776, intron 1 of 14) L2b|LINE|L2 27397 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 772-8 chr10 80834948 80835255 + 4 NA Intergenic L1M1|LINE|L1 185304 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 736-27 chr15 95359180 95359449 + 4 NA Intergenic Intergenic -32214 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 923-11 chr19 37446703 37447187 + 4 NA intron (NM_152484, intron 2 of 5) L1PB|LINE|L1 20499 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 681-37 chr19 56443422 56443749 + 4 NA intron (NM_022103, intron 4 of 4) Tigger3a|DNA|TcMar-Tigger 33760 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 845-29 chr5 101242885 101243288 + 4 NA Intergenic L1MA7|LINE|L1 -339804 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 717-73 chr6 126403664 126403913 + 4 NA intron (NR_104462, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 63673 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 650-26 chr14 47058833 47059100 + 4 NA non-coding (NR_103766, exon 9 of 9) non-coding (NR_103766, exon 9 of 9) 284280 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 348-373 chr4 102725798 102725911 + 4 NA intron (NM_005908, intron 2 of 16) intron (NM_005908, intron 2 of 16) 35114 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 748-43 chr19 32134465 32134729 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -28681 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 942-9 chr14 71253214 71253635 + 4 NA Intergenic L1MC2|LINE|L1 -67052 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 795-38 chr4 31473512 31473779 + 4 NA Intergenic Intergenic -32899 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 860-41 chr5 148096112 148096374 + 4 NA intron (NM_006846, intron 10 of 32) intron (NM_006846, intron 10 of 32) 32263 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 755-33 chr2 22723010 22723354 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 186703 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 666-91 chr5 22771313 22771573 + 4 NA intron (NM_004061, intron 1 of 14) MIR3|SINE|MIR 81901 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 695-67 chr3 119428028 119428266 + 4 NA TTS (NR_073506) TTS (NR_073506) 35468 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 657-12 chr10 36637841 36638048 + 4 NA Intergenic L1ME3|LINE|L1 -487913 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 584-116 chr4 78073535 78073710 + 4 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 16052 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 1087-13 chr4 62308320 62308869 + 4 NA Intergenic L1MA3|LINE|L1 -146829 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 847-48 chr8 125837996 125838221 + 4 NA Intergenic Intergenic 113089 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 656-74 chr21 33884956 33885222 + 4 NA exon (NM_003024, exon 37 of 40) exon (NM_003024, exon 37 of 40) 30715 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 706-36 chr18 38825699 38826106 + 4 NA Intergenic L1PB3|LINE|L1 796273 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 677-74 chr7 15767269 15767439 + 4 NA Intergenic Intergenic 78976 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 750-57 chr4 177195345 177195656 + 4 NA Intergenic Intergenic -114374 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 635-3 chr1 57327669 57328037 + 4 NA intron (NM_001353980, intron 4 of 5) L4_A_Mam|LINE|RTE-X 95259 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 218-130 chr18 4832354 4832445 + 4 NA Intergenic Tigger19b|DNA|TcMar-Tigger -248783 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1086-18 chr4 70934916 70935269 + 4 NA intron (NM_173468, intron 1 of 5) AluJr4|SINE|Alu 32723 NM_173468 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 1110-17 chr7 2979168 2979587 + 4 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 64490 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 883-2 chr10 30300187 30300550 + 4 NA Intergenic L1ME1|LINE|L1 48970 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 641-84 chr4 49091848 49092135 + 4 NA Intergenic (CATTC)n|Satellite|Satellite 105349 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 869-37 chr3 148053460 148053953 + 4 NA Intergenic L1MC1|LINE|L1 -24453 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 411-54 chr11 31818510 31818675 + 4 NA promoter-TSS (NM_001368923) promoter-TSS (NM_001368923) -631 NM_001368919 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 588-63 chr19 39597200 39597464 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR -5192 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 734-25 chr18 5225100 5225506 + 4 NA Intergenic L1MB5|LINE|L1 12726 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 647-101 chr8 89515233 89515482 + 4 NA Intergenic Intergenic 242354 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 756-38 chr3 2311029 2311321 + 4 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 72346 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 550-137 chr21 18814538 18814719 + 4 NA Intergenic Intergenic -54816 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 538-220 chr7 31643998 31644299 + 4 NA intron (NM_194300, intron 10 of 12) MIRc|SINE|MIR -42869 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 1234-4 chr9 27235137 27235716 + 4 NA Intergenic L1MA8|LINE|L1 47367 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 617-83 chr3 61041563 61041836 + 4 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 209753 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 791-66 chr8 46514386 46514763 + 4 NA Intergenic ALR/Alpha|Satellite|centr 103069 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 448-74 chr13 77122733 77122920 + 4 NA intron (NM_015057, intron 54 of 82) intron (NM_015057, intron 54 of 82) 47312 NR_046716 100874212 Hs.569288 NR_046716 ENSG00000236051 MYCBP2-AS1 - MYCBP2 antisense RNA 1 ncRNA 676-30 chr14 42306847 42307066 + 4 NA Intergenic Intergenic 700100 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 708-39 chr2 208661808 208662095 + 4 NA intron (NR_136588, intron 3 of 5) L1PA3|LINE|L1 119309 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 894-23 chr21 46030514 46031042 + 4 NA Intergenic MSTD|LTR|ERVL-MaLR 49029 NM_001848 1291 Hs.474053 NM_001848 ENSG00000142156 COL6A1 BTHLM1|OPLL|UCHMD1 collagen type VI alpha 1 chain protein-coding 824-3 chr10 69548774 69549255 + 4 NA Intergenic L1ME4a|LINE|L1 24408 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 862-11 chr12 72942446 72942876 + 4 NA Intergenic Intergenic -216529 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 628-2 chr1 12641137 12641479 + 4 NA Intergenic L1M4b|LINE|L1 -3239 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 757-21 chr17 53009442 53009807 + 4 NA Intergenic Intergenic 24119 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 396-193 chr20 33139344 33139532 + 4 NA Intergenic Intergenic -22332 NM_001319164 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 1136-10 chr7 31354011 31354592 + 4 NA Intergenic MER45A|DNA|hAT-Tip100 -13575 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 806-56 chrX 111472412 111472880 + 4 NA Intergenic MSTB|LTR|ERVL-MaLR -38999 NM_001354473 401613 Hs.98581 NM_001354473 ENSG00000260802 SERTM2 DKFZp686D0853|LINC00890 serine rich and transmembrane domain containing 2 protein-coding 718-46 chr2 184915549 184916005 + 4 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 251295 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 695-29 chr13 55018466 55018692 + 4 NA Intergenic MSTD-int|LTR|ERVL-MaLR -155875 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 1023-21 chr6 45143757 45144263 + 4 NA intron (NM_001350325, intron 2 of 10) L1PB2|LINE|L1 53760 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 844-32 chr2 51094733 51095201 + 4 NA intron (NR_135237, intron 2 of 10) ERVL47-int|LTR|ERVL 62366 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 337-182 chr15 81601422 81601529 + 4 NA Intergenic L1MEg|LINE|L1 -227262 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 885-21 chr5 108167013 108167557 + 4 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 214813 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 1049-8 chr17 52621313 52622034 + 4 NA Intergenic Intergenic 231151 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 662-91 chr7 112598721 112598920 + 4 NA Intergenic L1MA9|LINE|L1 -19245 NR_110159 100996249 Hs.561749 NR_110159 LOC100996249 - uncharacterized LOC100996249 ncRNA 575-63 chr16 5708318 5708516 + 4 NA Intergenic Intergenic 75950 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 565-112 chr3 26446339 26446502 + 4 NA Intergenic HAL1b|LINE|L1 -176386 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 1237-8 chr7 51902174 51902814 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -509238 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 703-30 chr14 87017408 87017696 + 4 NA Intergenic Intergenic 111774 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 1179-6 chr8 139583020 139583659 + 4 NA Intergenic Intergenic 119784 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 456-344 chr9 93928681 93928867 + 4 NA Intergenic Intergenic 26581 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 835-21 chr17 11009048 11009321 + 4 NA Intergenic Intergenic -171097 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 900-18 chr2 79868489 79868950 + 4 NA intron (NM_001282598, intron 4 of 17) intron (NM_001282598, intron 4 of 17) -2136 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 646-134 chr8 136075998 136076282 + 4 NA Intergenic Intergenic -454658 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 649-100 chr7 1684052 1684444 + 4 NA Intergenic L1MB8|LINE|L1 -3871 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 792-23 chr14 65672737 65673022 + 4 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 201777 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 884-5 chr12 32577442 32577901 + 4 NA intron (NM_001370298, intron 3 of 16) intron (NM_001370298, intron 3 of 16) 43378 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 901-22 chr4 58709873 58710348 + 4 NA Intergenic Intergenic -173782 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 932-10 chr21 15863188 15863531 + 4 NA intron (NM_001283042, intron 19 of 24) intron (NM_001283042, intron 19 of 24) 133377 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 694-74 chr20 17098250 17098684 + 4 NA Intergenic Intergenic -127640 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 204-114 chr16 80263303 80263380 + 4 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -277393 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 922-14 chr17 16552825 16553208 + 4 NA exon (NM_001346167, exon 6 of 6) exon (NM_001346167, exon 6 of 6) 16188 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 511-194 chr4 63147893 63148038 + 4 NA Intergenic HAL1ME|LINE|L1 -986200 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 624-83 chr3 74556058 74556311 + 4 NA Intergenic L1MB7|LINE|L1 -35044 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 888-20 chr2 56279874 56280253 + 4 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -94293 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 612-22 chr10 133436582 133436809 + 4 NA Intergenic L1ME3F|LINE|L1 -12078 NM_001012508 503542 Hs.64968 NM_001012508 ENSG00000203772 SPRN SHADOO|SHO|bA108K14.1 shadow of prion protein protein-coding 801-50 chr6 70182359 70182760 + 4 NA intron (NM_001858, intron 44 of 50) L2a|LINE|L2 100638 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 623-29 chr12 14725507 14725707 + 4 NA Intergenic L1MDa|LINE|L1 -29008 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 614-134 chr8 84160529 84160764 + 4 NA Intergenic L1MC3|LINE|L1 -22141 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1096-4 chr11 26376773 26377277 + 4 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 44895 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 516-192 chr4 68161773 68162035 + 4 NA Intergenic MER45R|DNA|hAT-Tip100 -20388 NR_015446 100130017 Hs.582037 NR_015446 ENSG00000250426 FTLP10 - ferritin light chain pseudogene 10 pseudo 722-17 chr10 121168076 121168402 + 4 NA Intergenic Intergenic 316877 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 657 chr1 4257523 4257840 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR -154370 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 638-145 chr7 12057184 12057454 + 4 NA Intergenic L1M2|LINE|L1 -153975 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 923-2 chr12 14535016 14535418 + 4 NA intron (NM_024829, intron 6 of 10) L2a|LINE|L2 -32515 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 688-33 chr12 96039511 96039805 + 4 NA intron (NM_001256644, intron 1 of 17) intron (NM_001256644, intron 1 of 17) 3862 NM_001256644 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 292-438 chr8 106059543 106059661 + 4 NA intron (NR_125796, intron 1 of 7) intron (NR_125796, intron 1 of 7) 901 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 785 chr1 5328122 5328484 + 4 NA Intergenic Intergenic 534438 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 603-102 chr22 28125769 28126087 + 4 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -205316 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 724-17 chr14 42626975 42627244 + 4 NA Intergenic Intergenic 1020253 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 408-200 chr22 43695864 43696057 + 4 NA intron (NM_198856, intron 8 of 29) L1ME1|LINE|L1 116345 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 940-4 chr10 45031286 45031716 + 4 NA Intergenic L1MEg|LINE|L1 30578 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 1078-5 chr18 55839482 55839879 + 4 NA Intergenic L2a|LINE|L2 -57955 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 475-8 chr1 107804325 107804532 + 4 NA intron (NM_006113, intron 2 of 26) L1MA4|LINE|L1 -92795 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 758-47 chr2 201524617 201524983 + 4 NA intron (NM_001168216, intron 11 of 12) L1PA15|LINE|L1 73060 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 505-316 chr8 129667693 129667919 + 4 NA intron (NR_130917, intron 1 of 3) L1ME1|LINE|L1 12433 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 1076-14 chr22 48765107 48765600 + 4 NA Intergenic L1M4a1|LINE|L1 -14942 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 528-256 chr8 128398118 128398376 + 4 NA Intergenic Intergenic 166432 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 813-24 chr22 27308510 27308954 + 4 NA Intergenic LTR16C|LTR|ERVL -1919 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 501-71 chr14 82973948 82974205 + 4 NA Intergenic Intergenic 331444 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 512-101 chr17 54103598 54103811 + 4 NA Intergenic L1PA16|LINE|L1 280777 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 456-179 chr20 41384100 41384239 + 4 NA Intergenic Intergenic -17351 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 836-50 chr6 52275692 52275948 + 4 NA intron (NM_001366375, intron 4 of 11) intron (NM_001366375, intron 4 of 11) 8922 NM_001366370 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 653-33 chr12 127765603 127765829 + 4 NA Intergenic Intergenic -110128 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 877-36 chr9 8144849 8145180 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -345236 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 619-64 chr19 56577554 56577850 + 4 NA exon (NM_001001668, exon 6 of 6) exon (NM_001001668, exon 6 of 6) 10234 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 624-30 chr12 43923789 43924122 + 4 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 87874 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 1105-12 chr21 45401604 45401994 + 4 NA Intergenic L1ME3C|LINE|L1 -3366 NM_130445 80781 Hs.517356 NM_030582 ENSG00000182871 COL18A1 KNO|KNO1|KS collagen type XVIII alpha 1 chain protein-coding 908-17 chr2 22583672 22584134 + 4 NA Intergenic MER67B|LTR|ERV1 47424 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 531-239 chr8 55325361 55325599 + 4 NA intron (NM_052898, intron 1 of 2) MIR3|SINE|MIR 129841 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 564-4 chr1 34692229 34692619 + 4 NA Intergenic Intergenic -22730 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 705-73 chr4 43263282 43263679 + 4 NA Intergenic L1MA3|LINE|L1 229063 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 557-90 chr2 49432144 49432308 + 4 NA Intergenic Intergenic -277699 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 841-42 chr8 64468559 64468983 + 4 NA Intergenic L1MEd|LINE|L1 89622 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 573-67 chr14 78351171 78351380 + 4 NA intron (NR_073547, intron 4 of 20) L1ME3Cz|LINE|L1 -52444 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 811-8 chr11 79800458 79800894 + 4 NA Intergenic Intergenic -359646 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 592-170 chr8 60199858 60200040 + 4 NA intron (NR_135821, intron 9 of 9) intron (NR_135821, intron 9 of 9) 81451 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 563-136 chr4 29346042 29346269 + 4 NA Intergenic Intergenic 131863 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 523-268 chr8 83984252 83984452 + 4 NA Intergenic L1M5|LINE|L1 -198435 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 658-45 chr14 97208257 97208470 + 4 NA Intergenic Intergenic 53506 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 426-95 chr16 60317749 60317877 + 4 NA Intergenic Intergenic 41980 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 478-256 chr6 98160518 98160806 + 4 NA Intergenic L1MC4|LINE|L1 136131 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 770-25 chr16 62802909 62803193 + 4 NA Intergenic L1M4|LINE|L1 -766613 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 348-2 chr1 29873110 29873228 + 4 NA Intergenic L1MDb|LINE|L1 164443 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 506-78 chr13 96950291 96950480 + 4 NA intron (NR_051966, intron 2 of 2) intron (NR_051966, intron 2 of 2) 33787 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 722-12 chr10 41899706 41899919 + 4 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 468233 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 548-46 chr12 13139121 13139389 + 4 NA Intergenic Intergenic -35588 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 1269-6 chr2 161954117 161954650 + 4 NA intron (NM_001354443, intron 19 of 25) intron (NM_001354443, intron 19 of 25) 119832 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 734-33 chr2 44154413 44154930 + 4 NA Intergenic L1ME3A|LINE|L1 -14132 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 784-34 chr21 45711885 45712230 + 4 NA intron (NM_001348238, intron 2 of 16) L1MC3|LINE|L1 -35957 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 450-286 chr7 98550232 98550413 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -66963 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 890-4 chr10 90129687 90130124 + 4 NA Intergenic Intergenic -172532 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 657-31 chr15 46985059 46985284 + 4 NA Intergenic L1P3|LINE|L1 -198918 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 1009-13 chr2 115064732 115065259 + 4 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 422 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 718-71 chr5 53523545 53523868 + 4 NA Intergenic L1MB3|LINE|L1 -36933 NM_001318051 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 1181-15 chr5 166560904 166561591 + 4 NA Intergenic L1MEf|LINE|L1 365123 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 867-20 chr2 22178429 22178811 + 4 NA Intergenic MIRb|SINE|MIR -357859 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 844-8 chr10 122965732 122966087 + 4 NA Intergenic L1PA13|LINE|L1 -11682 NM_024942 80007 Hs.501286 NM_024942 ENSG00000119965 C10orf88 - chromosome 10 open reading frame 88 protein-coding 382-319 chr5 20031084 20031282 + 4 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -42983 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 690-13 chr10 121619840 121620043 + 4 NA Intergenic Intergenic -21483 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 697-3 chr1 211071442 211071697 + 4 NA intron (NM_002238, intron 5 of 10) Tigger2b_Pri|DNA|TcMar-Tigger 61805 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 631-98 chr5 25875112 25875372 + 4 NA Intergenic L1M5|LINE|L1 684289 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 890-10 chr12 113982146 113982477 + 4 NA Intergenic Intergenic -15986 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 1056-5 chr16 76761370 76761916 + 4 NA Intergenic L1MC3|LINE|L1 -107293 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 425-141 chr2 120726441 120726645 + 4 NA Intergenic L1MC5|LINE|L1 -9325 NM_001371271 834-52 chr8 115913576 115913898 + 4 NA Intergenic Intergenic -244762 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 796-50 chr7 23910255 23910537 + 4 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 200177 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 566-172 chr6 166385394 166385592 + 4 NA Intergenic Intergenic -2480 NR_073093 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 806-30 chr2 80931633 80931943 + 4 NA Intergenic Intergenic 535158 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 463-250 chr6 46726393 46726547 + 4 NA intron (NM_001168357, intron 1 of 11) intron (NM_001168357, intron 1 of 11) 8905 NM_005084 7941 Hs.584823 NM_005084 ENSG00000146070 PLA2G7 LDL-PLA2|LP-PLA2|PAFAD|PAFAH phospholipase A2 group VII protein-coding 896-18 chr2 117247247 117247628 + 4 NA Intergenic Intergenic -567254 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 753-57 chr8 116252421 116252742 + 4 NA intron (NR_046215, intron 4 of 13) L2a|LINE|L2 72478 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 808-40 chr5 7090909 7091290 + 4 NA Intergenic Intergenic 178255 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 921-6 chr16 13287084 13287427 + 4 NA Intergenic L2|LINE|L2 385657 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 684-35 chr14 75604411 75604705 + 4 NA promoter-TSS (NM_001195283) promoter-TSS (NM_001195283) -982 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 836-14 chr11 48598160 48598526 + 4 NA Intergenic L1PB1|LINE|L1 109550 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 831-29 chr22 20541189 20541622 + 4 NA intron (NM_001003891, intron 2 of 17) L1MB8|LINE|L1 33358 NM_001293237 51586 Hs.517421 NM_015889 ENSG00000099917 MED15 ARC105|CAG7A|CTG7A|PCQAP|TIG-1|TIG1|TNRC7 mediator complex subunit 15 protein-coding 581-14 chr10 58016470 58016653 + 4 NA Intergenic L1MA9|LINE|L1 251333 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 664-32 chr12 40580059 40580373 + 4 NA Intergenic LTR27D|LTR|ERV1 -112223 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 374-96 chr14 41837988 41838158 + 4 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 231217 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1021-15 chr8 126336150 126336611 + 4 NA Intergenic L1PB2|LINE|L1 10885 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 743-65 chr5 35166641 35167162 + 4 NA intron (NM_000949, intron 1 of 9) MamGypsy2-I|LTR|Gypsy -48779 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 534-170 chr3 188500733 188501018 + 4 NA intron (NM_001167672, intron 3 of 9) L1M4c|LINE|L1 67791 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 863-13 chr15 62216890 62217211 + 4 NA Intergenic LTR14A|LTR|ERVK -13732 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 894-5 chr10 83790306 83790775 + 4 NA Intergenic L1PB4|LINE|L1 -113451 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 675-21 chr12 47437989 47438226 + 4 NA Intergenic L1MD|LINE|L1 23099 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 523-119 chr19 52358765 52359003 + 4 NA intron (NM_001161425, intron 5 of 5) L1MB2|LINE|L1 -11039 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 1071-19 chr5 180261972 180262428 + 4 NA intron (NM_001364608, intron 5 of 12) L1MC1|LINE|L1 18408 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 722-9 chr1 232524945 232525402 + 4 NA Intergenic Intergenic -9565 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 732-35 chr17 69984119 69984384 + 4 NA TTS (NR_110874) TTS (NR_110874) 22544 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 963-26 chr5 140771238 140771601 + 4 NA Intergenic L1MD1|LINE|L1 -14717 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 676-6 chr1 98230477 98230786 + 4 NA intron (NR_046088, intron 1 of 2) MER44D|DNA|TcMar-Tigger 19920 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 928-10 chr17 55361721 55362118 + 4 NA Intergenic L1MB8|LINE|L1 59916 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 463-231 chr5 42645468 42645585 + 4 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 79662 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 1338-5 chr4 62440078 62440665 + 4 NA Intergenic L1MC2|LINE|L1 -278606 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 720-40 chr19 36706975 36707209 + 4 NA intron (NM_001363651, intron 1 of 4) L1MEc|LINE|L1 3411 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 352-549 chr8 141329036 141329204 + 4 NA Intergenic MER33|DNA|hAT-Charlie -11429 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 920-12 chr15 94992257 94992656 + 4 NA Intergenic Charlie25|DNA|hAT-Charlie 137093 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 607-154 chr9 28276453 28276715 + 4 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 442721 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1246-3 chr14 86136523 86137067 + 4 NA Intergenic L1MA4|LINE|L1 202117 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 547-208 chr6 140725473 140725704 + 4 NA Intergenic L1MC3|LINE|L1 41774 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 486-176 chr20 52442416 52442640 + 4 NA Intergenic Intergenic -178310 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 688-57 chr17 72263625 72263957 + 4 NA Intergenic Intergenic -79020 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 581-8 chr10 19236287 19236581 + 4 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 187633 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 1644-3 chr8 105190068 105190900 + 4 NA Intergenic L1MA3|LINE|L1 -127954 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 746-48 chr20 63142127 63142501 + 4 NA Intergenic L1ME2|LINE|L1 -36186 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 869-25 chr19 29139666 29140177 + 4 NA Intergenic MIR|SINE|MIR 73230 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 502-195 chr4 33579291 33579632 + 4 NA Intergenic Intergenic 460432 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 1059-2 chr11 59798945 59799304 + 4 NA intron (NM_004177, intron 10 of 10) AluJr|SINE|Alu 11654 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 761-66 chr7 70970339 70970741 + 4 NA Intergenic Intergenic -161604 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 629-21 chr10 66880513 66880800 + 4 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -45380 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 586-86 chr20 19563054 19563214 + 4 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -278538 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 1693-3 chr8 89110835 89111526 + 4 NA Intergenic L1MA9|LINE|L1 646531 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 370-192 chr18 12673831 12673953 + 4 NA intron (NM_001271989, intron 10 of 10) AluSx1|SINE|Alu 15153 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 556-69 chr14 79522187 79522398 + 4 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 242912 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 824-4 chr10 78887826 78888263 + 4 NA Intergenic L1M5|LINE|L1 179404 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 866-10 chr11 39299082 39299531 + 4 NA Intergenic AluSg|SINE|Alu 650448 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 264-379 chr7 17695005 17695087 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -136137 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 1157-11 chr5 62987102 62987562 + 4 NA Intergenic L1PA16|LINE|L1 408513 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 933-7 chr12 24315395 24315785 + 4 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 92319 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 714-43 chr2 226491459 226491756 + 4 NA Intergenic Intergenic 167186 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 752-5 chr10 85089368 85089614 + 4 NA Intergenic L1M4|LINE|L1 109414 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 609-68 chr20 54002591 54002915 + 4 NA intron (NM_001366297, intron 4 of 8) (ATGA)n|Simple_repeat|Simple_repeat 56267 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 864-41 chr6 162498877 162499278 + 4 NA intron (NM_004562, intron 1 of 11) L2c|LINE|L2 -228055 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 760-20 chr15 40912014 40912292 + 4 NA Intergenic Intergenic 5344 NR_135836 105370943 Hs.574244 NR_135836 LOC105370943 - uncharacterized LOC105370943 ncRNA 822-27 chr2 20760954 20761318 + 4 NA intron (NM_021925, intron 4 of 6) intron (NM_021925, intron 4 of 6) 61965 NM_001282720 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 812-22 chr14 83943200 83943560 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 1300748 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 724-32 chr2 17929752 17930017 + 4 NA intron (NM_002252, intron 2 of 2) intron (NM_002252, intron 2 of 2) 51217 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 745-50 chr4 134495903 134496193 + 4 NA intron (NR_147155, intron 3 of 3) L1MA4A|LINE|L1 72180 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 894-34 chr5 40133301 40133648 + 4 NA Intergenic MER4B|LTR|ERV1 81183 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 568-110 chr2 114139816 114139982 + 4 NA Intergenic Intergenic -159915 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 688-99 chr7 62937284 62937470 + 4 NA Intergenic ALR/Alpha|Satellite|centr 366679 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 373-221 chr2 170920000 170920168 + 4 NA Intergenic L1MC|LINE|L1 -8393 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 1021-12 chr5 56420413 56420822 + 4 NA Intergenic L1MEg|LINE|L1 61152 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 886-2 chr10 21211682 21212010 + 4 NA Intergenic Intergenic 37544 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 829-10 chr10 95734297 95734710 + 4 NA intron (NM_001098175, intron 1 of 9) intron (NM_001098175, intron 1 of 9) -21149 NM_001164181 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 442-272 chr7 35475566 35475844 + 4 NA Intergenic L1M4|LINE|L1 161850 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 849-16 chr15 98057088 98057607 + 4 NA Intergenic L1MA4A|LINE|L1 31406 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 762-49 chr4 62142331 62142650 + 4 NA intron (NR_110595, intron 2 of 7) L1PB4|LINE|L1 19275 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 964-23 chr3 116218863 116219375 + 4 NA intron (NM_001318915, intron 1 of 8) L1MB1|LINE|L1 -140905 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 781-34 chr2 107519913 107520293 + 4 NA Intergenic L1ME1|LINE|L1 -9316 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 748-61 chr3 187962968 187963338 + 4 NA intron (NR_135538, intron 2 of 2) intron (NR_135538, intron 2 of 2) 13254 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 633-42 chr14 45995608 45995876 + 4 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -68417 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 694-102 chr5 39351749 39352022 + 4 NA intron (NM_001737, intron 1 of 10) MSTA-int|LTR|ERVL-MaLR 12610 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 664-47 chr16 88997751 88997936 + 4 NA Intergenic L1M4a2|LINE|L1 -20636 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 727-9 chr10 52589702 52589919 + 4 NA intron (NR_155748, intron 1 of 2) L1MA3|LINE|L1 -119277 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 628-26 chr10 43068706 43068961 + 4 NA Intergenic Intergenic -8194 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 2635 chr2 11037415 11038621 + 4 NA Intergenic L1PB3|LINE|L1 94158 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 633-84 chr4 35738187 35738554 + 4 NA Intergenic Intergenic 505569 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 732-9 chr10 60152013 60152345 + 4 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -11163 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 1076-17 chr3 147032587 147032956 + 4 NA Intergenic Intergenic 110848 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 330-453 chr5 177535388 177535528 + 4 NA intron (NM_001366500, intron 4 of 9) intron (NM_001366500, intron 4 of 9) -18497 NM_016222 51428 Hs.484288 NM_016222 ENSG00000183258 DDX41 ABS|MPLPF DEAD-box helicase 41 protein-coding 719-84 chr8 131166744 131166956 + 4 NA Intergenic L1MEf|LINE|L1 -125941 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 652-109 chr7 52530776 52531017 + 4 NA Intergenic Intergenic -504737 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 338-65 chr10 60639334 60639483 + 4 NA intron (NM_001204403, intron 1 of 43) L1MEc|LINE|L1 -66452 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 685-8 chr10 39189510 39189820 + 4 NA Intergenic ALR/Alpha|Satellite|centr 493069 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 756-64 chr8 135865884 135866239 + 4 NA Intergenic Intergenic 408605 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1299-2 chr15 27208756 27209335 + 4 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -47726 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 756-11 chr12 129473734 129474068 + 4 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 265300 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 634-79 chr2 125822676 125822878 + 4 NA Intergenic LTR38A1|LTR|ERV1 295208 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 660-62 chr3 28867167 28867486 + 4 NA Intergenic Intergenic 292048 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 840-41 chr5 106066864 106067231 + 4 NA Intergenic L1MEf|LINE|L1 943967 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 1167-15 chr6 61474841 61475418 + 4 NA Intergenic ALR/Alpha|Satellite|centr -99001 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 438-183 chr3 184086564 184086729 + 4 NA Intergenic LTR37A|LTR|ERV1 -10418 NM_198313 285242 Hs.449179 NM_182589 ENSG00000186038 HTR3E 5-HT3-E|5-HT3E|5-HT3c1 5-hydroxytryptamine receptor 3E protein-coding 609-119 chr6 159414932 159415254 + 4 NA Intergenic L1M3c|LINE|L1 31562 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 1338-2 chr15 94870245 94870631 + 4 NA Intergenic Intergenic 15075 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 684-92 chr5 13182437 13182712 + 4 NA Intergenic L2b|LINE|L2 -149688 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 667-87 chr5 94570809 94571152 + 4 NA intron (NM_001145678, intron 2 of 20) BLACKJACK|DNA|hAT-Blackjack 47624 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 1231-4 chr2 89831927 89832543 + 4 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -194328 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 877-23 chr4 70461116 70461520 + 4 NA intron (NM_001145006, intron 1 of 3) intron (NM_001145006, intron 1 of 3) -10640 NM_001145007 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 1018-25 chr22 44475484 44475963 + 4 NA Intergenic L1MDa|LINE|L1 22510 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 846-53 chr7 41265069 41265350 + 4 NA Intergenic Intergenic 163605 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 460-133 chr2 18037457 18037651 + 4 NA Intergenic L1MEf|LINE|L1 158887 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 435-18 chr1 163633160 163633371 + 4 NA Intergenic L1M2|LINE|L1 -210074 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 1089-11 chr4 101842076 101842450 + 4 NA intron (NM_017935, intron 2 of 16) intron (NM_017935, intron 2 of 16) 28421 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 1034-10 chr17 33793067 33793533 + 4 NA intron (NM_001094, intron 1 of 9) MIR|SINE|MIR -259540 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 941-12 chr2 35271877 35272330 + 4 NA Intergenic L1MA6|LINE|L1 -199302 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 594-17 chr10 61619781 61619966 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR -43056 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 584-52 chr17 53616220 53616431 + 4 NA Intergenic Intergenic -206602 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 1097-8 chr20 60588257 60588701 + 4 NA Intergenic Intergenic 23917 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 770-54 chr4 44154104 44154358 + 4 NA Intergenic Intergenic 137169 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 707-5 chr1 191931992 191932221 + 4 NA Intergenic Intergenic -226356 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 543-68 chr12 127420784 127420949 + 4 NA Intergenic Intergenic -80794 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 726-61 chr5 99839914 99840172 + 4 NA Intergenic Intergenic 306053 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 526-92 chr17 34105878 34106095 + 4 NA intron (NM_001094, intron 1 of 9) L1MC4a|LINE|L1 50820 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 782-14 chr12 21000971 21001380 + 4 NA intron (NM_001371097, intron 13 of 15) L1PBb|LINE|L1 -14521 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 782-22 chr15 27700092 27700535 + 4 NA Intergenic Intergenic 399002 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 878-5 chr1 238278097 238278454 + 4 NA Intergenic L1MCa|LINE|L1 207742 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 352-223 chr2 24148623 24148789 + 4 NA intron (NM_001145710, intron 7 of 10) L1MA2|LINE|L1 25237 NM_001145710 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 668-4 chr1 175417553 175417755 + 4 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -224667 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 629-75 chr20 20901719 20901901 + 4 NA Intergenic L2a|LINE|L2 -189166 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 709-27 chr16 73463114 73463420 + 4 NA Intergenic MIR|SINE|MIR 76462 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 426-37 chr11 11718883 11719091 + 4 NA Intergenic L1ME3G|LINE|L1 -62265 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 412-30 chr10 58572277 58572412 + 4 NA intron (NM_001080512, intron 1 of 20) L1PA11|LINE|L1 59472 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 534-19 chr1 214579441 214579620 + 4 NA Intergenic Intergenic -23665 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 852-10 chr11 47492634 47493127 + 4 NA intron (NM_006560, intron 1 of 13) intron (NM_006560, intron 1 of 13) 1641 NM_198700 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 836-38 chr3 25495760 25496132 + 4 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 37636 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 606-124 chr4 187591954 187592117 + 4 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) 80606 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 626-55 chr19 31822261 31822427 + 4 NA Intergenic Intergenic -203518 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 464-139 chr2 183409037 183409311 + 4 NA Intergenic Intergenic 284731 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 904-17 chr16 72235463 72236072 + 4 NA Intergenic L1MB7|LINE|L1 -63317 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 871-16 chr20 1066880 1067266 + 4 NA Intergenic L1MEg|LINE|L1 -46156 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 552-56 chr14 40454345 40454627 + 4 NA Intergenic L1M4|LINE|L1 -500225 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 733-74 chr7 54005863 54006260 + 4 NA Intergenic Intergenic -194130 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 652-77 chr21 32115520 32115833 + 4 NA Intergenic MLT2C1|LTR|ERVL -29381 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 543-44 chr10 125258104 125258308 + 4 NA Intergenic Intergenic -97176 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 944-23 chr6 139829796 139830223 + 4 NA intron (NR_038399, intron 1 of 2) intron (NR_038399, intron 1 of 2) -24841 NR_138541 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 616-8 chr1 208359801 208360149 + 4 NA Intergenic Intergenic -115591 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 620-92 chr3 117493967 117494142 + 4 NA Intergenic Intergenic 196871 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 650-25 chr14 42511920 42512106 + 4 NA Intergenic L1M4c|LINE|L1 905157 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1094-2 chr14 65687298 65687767 + 4 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 216430 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 854-37 chr5 143724863 143725268 + 4 NA Intergenic L1PA16|LINE|L1 45205 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 557-50 chr13 111927536 111927701 + 4 NA Intergenic Intergenic 34122 NR_120401 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 626-122 chr6 34725938 34726349 + 4 NA Intergenic LTR8B|LTR|ERV1 29198 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 308-413 chr6 19519789 19519939 + 4 NA Intergenic L2a|LINE|L2 70043 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 750-65 chr7 22923118 22923439 + 4 NA Intergenic L1M4b|LINE|L1 66665 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 637-118 chr8 118845956 118846214 + 4 NA Intergenic L1MB5|LINE|L1 105800 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 414-294 chr7 4967910 4968084 + 4 NA Intergenic AluJr|SINE|Alu -5988 NR_015449 441191 Hs.520636 NR_015449 ENSG00000196204 RNF216P1 RNF216L|hCG2040556 ring finger protein 216 pseudogene 1 pseudo 817-13 chr13 105131122 105131372 + 4 NA Intergenic Intergenic -334620 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 625-71 chr3 167323788 167324002 + 4 NA intron (NM_001199202, intron 11 of 20) L2|LINE|L2 56388 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 695-105 chr8 126222699 126222962 + 4 NA Intergenic MER41-int|LTR|ERV1 -102665 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 608-64 chr19 29173985 29174315 + 4 NA Intergenic L1MA2|LINE|L1 39001 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1118 chr10 69624707 69625270 + 4 NA Intergenic L1MDa|LINE|L1 -5259 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 710-66 chr3 81703102 81703454 + 4 NA intron (NM_000158, intron 2 of 15) intron (NM_000158, intron 2 of 15) 58367 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 806-20 chr16 25443978 25444384 + 4 NA Intergenic L2c|LINE|L2 -186336 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 1365 chr12 125820411 125821048 + 4 NA Intergenic AluYm1|SINE|Alu 162645 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 573-26 chr10 72814602 72814821 + 4 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) -79028 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 704-9 chr10 26059176 26059515 + 4 NA intron (NM_017433, intron 10 of 34) L1MC1|LINE|L1 125116 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 1521-9 chr7 2023014 2023599 + 4 NA intron (NM_001013837, intron 12 of 18) L1MCa|LINE|L1 65746 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 694-62 chr2 12704086 12704346 + 4 NA Intergenic MLT1H1|LTR|ERVL-MaLR -12656 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 354-145 chr14 76681129 76681292 + 4 NA Intergenic L2c|LINE|L2 -80258 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 679-70 chr3 40292069 40292341 + 4 NA intron (NR_033965, intron 2 of 2) intron (NR_033965, intron 2 of 2) 17493 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 1296-6 chr5 38770623 38771290 + 4 NA intron (NR_109951, intron 2 of 3) AluJr|SINE|Alu -50683 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 700-16 chr11 28595672 28595968 + 4 NA Intergenic MIRc|SINE|MIR -118272 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 931-19 chr3 44738090 44738469 + 4 NA Intergenic AluJo|SINE|Alu 8644 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 632-122 chr8 132746077 132746382 + 4 NA intron (NM_144649, intron 5 of 9) intron (NM_144649, intron 5 of 9) 14353 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 1189-2 chr2 190541176 190541871 + 4 NA Intergenic L1MA4|LINE|L1 -6801 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 776-46 chr5 120245547 120245945 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -218532 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 730-15 chr14 52396684 52396991 + 4 NA Intergenic L1PA17|LINE|L1 82525 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 842-4 chr1 192162030 192162291 + 4 NA intron (NM_130782, intron 3 of 4) intron (NM_130782, intron 3 of 4) 3698 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 917-4 chr10 108502419 108502810 + 4 NA Intergenic Intergenic -433321 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 1085-18 chr7 25973767 25974366 + 4 NA Intergenic HAL1|LINE|L1 -24080 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 702-55 chr20 47991122 47991400 + 4 NA Intergenic Intergenic -1144 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 473-96 chr15 56602723 56602968 + 4 NA Intergenic Cheshire|DNA|hAT-Charlie 131241 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 778-72 chr9 71173732 71173938 + 4 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -52214 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 792-5 chr10 62678951 62679295 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -125597 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 684-130 chr9 81881896 81882137 + 4 NA Intergenic Intergenic -31421 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 603-46 chr14 46609354 46609635 + 4 NA Intergenic L1PREC2|LINE|L1 42287 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 724-99 chr8 85466994 85467333 + 4 NA intron (NM_001293675, intron 2 of 5) intron (NM_001293675, intron 2 of 5) -2248 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 446-258 chr5 178625478 178625675 + 4 NA intron (NM_020666, intron 1 of 12) intron (NM_020666, intron 1 of 12) 1474 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 1272-4 chr19 21219108 21219599 + 4 NA Intergenic Intergenic 77313 NM_001319126 170959 Hs.156256 NM_133473 ENSG00000196705 ZNF431 - zinc finger protein 431 protein-coding 862-21 chr21 18085584 18085974 + 4 NA intron (NM_001204178, intron 2 of 5) L1M2a1|LINE|L1 -159054 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 959-19 chr2 234849409 234850059 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -102283 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 446-228 chr5 3403259 3403441 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -49466 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 1533-7 chr8 78815240 78815827 + 4 NA Intergenic L1MA8|LINE|L1 -10010 NM_001199887 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 417-236 chr6 48786419 48786590 + 4 NA Intergenic L1MCb|LINE|L1 676749 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 661-46 chr2 79779705 79779983 + 4 NA intron (NM_001282598, intron 3 of 17) MER4B|LTR|ERV1 86739 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 388-202 chr21 30359885 30360022 + 4 NA Intergenic Intergenic -11347 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 655-115 chr8 5024948 5025227 + 4 NA Intergenic Intergenic -30173 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1198-8 chr5 4760193 4760925 + 4 NA Intergenic Intergenic -12922 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 698-82 chr8 25706215 25706538 + 4 NA Intergenic Intergenic 247143 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 459-58 chr12 2377095 2377297 + 4 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 107420 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 377-422 chr8 139480552 139480744 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR 222475 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 771-84 chr8 124800613 124800850 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -21254 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 663-97 chr6 139120490 139120714 + 4 NA Intergenic Intergenic -14478 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 1148-10 chr5 101227503 101228006 + 4 NA Intergenic L1PB2|LINE|L1 -324472 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 699-18 chr11 74900979 74901250 + 4 NA intron (NM_001270381, intron 8 of 15) L1MA2|LINE|L1 47977 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 1212-12 chr5 141166999 141167616 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -5337 NM_018940 56129 Hs.203830 NM_018940 ENSG00000113212 PCDHB7 PCDH-BETA7 protocadherin beta 7 protein-coding 814-23 chr14 62503713 62504110 + 4 NA Intergenic Intergenic -363938 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 599-62 chr2 145899587 145899767 + 4 NA Intergenic Intergenic -687380 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 563-122 chr3 74220996 74221150 + 4 NA Intergenic Intergenic 300067 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 408-33 chr1 234989396 234989525 + 4 NA Intergenic Intergenic -25461 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 321-39 chr1 237425680 237425912 + 4 NA intron (NM_001035, intron 12 of 104) Tigger2a|DNA|TcMar-Tigger -45323 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 1017-22 chr7 52693512 52694011 + 4 NA Intergenic Intergenic -341872 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 592-48 chr14 55228683 55228840 + 4 NA Intergenic L1MB7|LINE|L1 -37176 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 900-5 chr10 76489131 76489580 + 4 NA intron (NM_001305581, intron 6 of 6) L1M1|LINE|L1 -398689 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 2367 chr21 21344669 21345921 + 4 NA intron (NM_001352592, intron 9 of 18) L1MA1|LINE|L1 198133 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 716-90 chr9 7625612 7626011 + 4 NA Intergenic L1MEa|LINE|L1 173967 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 519-207 chr7 8863244 8863407 + 4 NA Intergenic Intergenic 429716 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 1163-2 chr11 48715780 48716230 + 4 NA Intergenic ALR/Alpha|Satellite|centr 227212 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 365-26 chr1 181905960 181906143 + 4 NA Intergenic MER34A|LTR|ERV1 155661 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 697-58 chr5 5988082 5988434 + 4 NA Intergenic AluSg7|SINE|Alu 349034 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 610-42 chr13 52876014 52876178 + 4 NA Intergenic MER76|LTR|ERVL -27456 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 751-8 chr11 44085498 44085869 + 4 NA Intergenic L1MEd|LINE|L1 -9866 NM_207122 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 617-90 chr3 109694126 109694334 + 4 NA Intergenic L1PA16|LINE|L1 91402 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 674-36 chr16 76312146 76312422 + 4 NA intron (NM_138994, intron 1 of 22) MER20|DNA|hAT-Charlie 2432 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 628-66 chr2 4370637 4370799 + 4 NA Intergenic MIRb|SINE|MIR 285504 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 797-40 chr5 63620135 63620424 + 4 NA Intergenic MIRb|SINE|MIR 342013 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1372-4 chr6 156560661 156561279 + 4 NA Intergenic L1MC5|LINE|L1 182220 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 513-207 chr4 72727817 72728007 + 4 NA Intergenic L1M1|LINE|L1 -158691 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 652-13 chr10 5233352 5233635 + 4 NA Intergenic Intergenic 36656 NM_001818 1109 Hs.567245 NM_001818 ENSG00000198610 AKR1C4 3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA aldo-keto reductase family 1 member C4 protein-coding 484-85 chr16 59021428 59021585 + 4 NA Intergenic LTR33|LTR|ERVL -287190 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 787-15 chr19 24374442 24374804 + 4 NA Intergenic ALR/Alpha|Satellite|centr -211176 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 628-89 chr3 103990672 103990872 + 4 NA Intergenic HUERS-P2-int|LTR|ERV1 -466656 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 480-317 chr9 93373011 93373169 + 4 NA Intergenic Intergenic -26676 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 650-71 chr21 27294030 27294379 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -327116 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 615-78 chr22 35003835 35004055 + 4 NA Intergenic L2b|LINE|L2 -6029 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 984-2 chr1 49113384 49113799 + 4 NA intron (NM_001323575, intron 4 of 12) Tigger1|DNA|TcMar-Tigger -143820 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 1027-2 chr10 123184459 123184940 + 4 NA Intergenic L1MEi|LINE|L1 30297 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 1757 chr14 83887380 83888185 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR 1245150 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 832-21 chr20 52821774 52822074 + 4 NA Intergenic Tigger4|DNA|TcMar-Tigger -150434 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 765-40 chr3 44724588 44724905 + 4 NA TTS (NM_001134442) TTS (NM_001134442) -4860 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 787-12 chr15 60301336 60301738 + 4 NA Intergenic L1PA3|LINE|L1 96449 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 568-210 chrX 143578483 143578655 + 4 NA Intergenic L1M1|LINE|L1 55934 NM_001184750 139065 Hs.272284 NM_173078 ENSG00000179542 SLITRK4 - SLIT and NTRK like family member 4 protein-coding 434-89 chr15 51264320 51264486 + 4 NA intron (NM_000103, intron 1 of 9) L2a|LINE|L2 -8614 NM_001347253 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 1002-24 chrX 57341174 57341507 + 4 NA exon (NM_174912, exon 5 of 11) exon (NM_174912, exon 5 of 11) 54486 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 710-71 chr4 167513924 167514238 + 4 NA Intergenic Intergenic -279491 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 495-12 chr1 195637062 195637206 + 4 NA Intergenic Intergenic 451581 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 698-36 chr2 38072560 38072838 + 4 NA intron (NM_000104, intron 2 of 2) intron (NM_000104, intron 2 of 2) 3482 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 506-17 chr1 167262499 167262662 + 4 NA intron (NM_001365848, intron 2 of 17) intron (NM_001365848, intron 2 of 17) 41694 NM_001198786 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 976-6 chr10 98661286 98661687 + 4 NA intron (NM_021828, intron 6 of 11) L1ME4b|LINE|L1 -214523 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 634-49 chr13 55526699 55527003 + 4 NA Intergenic Intergenic 352397 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 589-136 chr5 178962905 178963081 + 4 NA intron (NM_001178089, intron 4 of 4) L1ME3A|LINE|L1 21795 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 622-65 chr2 102508222 102508446 + 4 NA intron (NM_001011552, intron 5 of 11) intron (NM_001011552, intron 5 of 11) 35108 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 1955 chr18 12827743 12828860 + 4 NA intron (NM_080423, intron 4 of 8) HAL1M8|LINE|L1 12661 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 722-27 chr14 41525546 41525772 + 4 NA Intergenic Intergenic -81197 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 477-262 chr7 83751895 83752068 + 4 NA Intergenic Intergenic -102842 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 469-280 chr8 79467904 79468064 + 4 NA Intergenic Tigger3c|DNA|TcMar-Tigger 135796 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 1003-15 chr5 46025599 46026104 + 4 NA Intergenic ALR/Alpha|Satellite|centr -329471 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 608-36 chr13 71958786 71958967 + 4 NA Intergenic Intergenic -91672 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 686-14 chr11 35341758 35341995 + 4 NA intron (NM_001195728, intron 1 of 11) L1ME3G|LINE|L1 77682 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 631-69 chr2 82558760 82558974 + 4 NA Intergenic Intergenic -297936 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 882-33 chr4 42814649 42815107 + 4 NA Intergenic Intergenic -78388 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 782-57 chr6 9276956 9277200 + 4 NA Intergenic L2c|LINE|L2 624869 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 1038-13 chr4 12312696 12313067 + 4 NA Intergenic L1MB7|LINE|L1 89430 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 461-101 chr17 14691573 14691772 + 4 NA Intergenic L1M3de|LINE|L1 -323133 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 730-62 chr5 144011071 144011313 + 4 NA Intergenic MER21-int|LTR|ERVL 159467 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 928-6 chr14 45353778 45354258 + 4 NA Intergenic Intergenic -100816 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 546-142 chr3 37418121 37418336 + 4 NA 3' UTR (NM_178344, exon 4 of 4) 3' UTR (NM_178344, exon 4 of 4) 7090 NM_001302832 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 1022-21 chr7 17269211 17269766 + 4 NA Intergenic L1M2|LINE|L1 -29164 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 849-35 chr5 15685342 15685830 + 4 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -70584 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 1080-21 chr4 151548290 151548745 + 4 NA intron (NM_001109977, intron 3 of 13) MER41A|LTR|ERV1 139341 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 610-32 chr12 5360790 5361053 + 4 NA Intergenic Intergenic -71187 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 828-50 chr8 118523464 118523933 + 4 NA intron (NM_001101676, intron 2 of 4) L2a|LINE|L2 -97303 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 446-266 chr6 93558577 93558806 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -139109 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 374-205 chr2 144221481 144221641 + 4 NA intron (NM_001164629, intron 2 of 11) intron (NM_001164629, intron 2 of 11) -9982 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 1476-3 chr16 35440233 35440845 + 4 NA Intergenic Intergenic 40057 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 892-7 chr10 109186434 109186807 + 4 NA Intergenic L1MA5A|LINE|L1 736626 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 589-157 chr8 88750009 88750403 + 4 NA Intergenic Intergenic -422723 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 1381-2 chr4 53597824 53598554 + 4 NA intron (NR_046827, intron 1 of 1) L2c|LINE|L2 5233 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 623-106 chr5 56548609 56548784 + 4 NA intron (NR_161255, intron 2 of 5) MIRb|SINE|MIR 57560 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 568-73 chr16 46710281 46710443 + 4 NA intron (NM_182493, intron 11 of 12) intron (NM_182493, intron 11 of 12) 20703 NR_037620 23594 Hs.49760 NM_014321 ENSG00000091651 ORC6 ORC6L origin recognition complex subunit 6 protein-coding 475-287 chr8 111884661 111884870 + 4 NA Intergenic (AATATA)n|Simple_repeat|Simple_repeat 508126 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 618-18 chr11 1494617 1494958 + 4 NA Intergenic L1ME2z|LINE|L1 -8008 NM_001172223 81532 Hs.370360 NM_053005 ENSG00000182208 MOB2 HCCA2 MOB kinase activator 2 protein-coding 1102 chr1 114362349 114362811 + 4 NA Intergenic MER4-int|LTR|ERV1 148623 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 666-49 chr19 32080846 32081161 + 4 NA Intergenic Intergenic 24913 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 826-28 chr2 192240176 192240441 + 4 NA Intergenic Intergenic -45375 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 798-39 chr4 11693985 11694326 + 4 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR 75313 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 246-378 chr7 86899832 86899921 + 4 NA intron (NM_001291991, intron 17 of 20) intron (NM_001291991, intron 17 of 20) 66023 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 1196-6 chr21 30116447 30116974 + 4 NA Intergenic Intergenic 50095 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 610-179 chr9 96765151 96765329 + 4 NA intron (NM_001314060, intron 2 of 4) intron (NM_001314060, intron 2 of 4) 12847 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 1054-7 chr20 43250392 43250819 + 4 NA Intergenic Intergenic -60699 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 1186-15 chr3 177310899 177311294 + 4 NA intron (NR_047465, intron 1 of 1) L1ME1|LINE|L1 16654 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 1056-19 chr8 10009353 10009840 + 4 NA Intergenic HAL1b|LINE|L1 -44696 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 528-211 chr5 150936079 150936397 + 4 NA intron (NR_026867, intron 4 of 4) L1MB8|LINE|L1 10346 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 730-64 chr6 48713760 48714017 + 4 NA Intergenic Intergenic -645199 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 327-369 chr4 100229305 100229547 + 4 NA Intergenic L3|LINE|CR1 -38958 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 638-149 chr7 52873090 52873367 + 4 NA Intergenic L1M2|LINE|L1 -162405 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 1619-2 chr2 210502231 210502947 + 4 NA intron (NM_001122633, intron 1 of 38) intron (NM_001122633, intron 1 of 38) -17129 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 937-8 chr14 81972544 81972933 + 4 NA Intergenic Intergenic -229600 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 739-5 chr1 172859313 172859604 + 4 NA Intergenic Intergenic 191505 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 726-3 chr1 147300412 147300765 + 4 NA Intergenic L1MA8|LINE|L1 57446 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 995-12 chr2 54798167 54798620 + 4 NA intron (NM_001039753, intron 1 of 40) AluSx3|SINE|Alu 73381 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 805-44 chr7 50238651 50238928 + 4 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -65275 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 526-238 chr8 21072168 21072441 + 4 NA Intergenic Intergenic 98318 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 514-188 chr3 87706762 87707000 + 4 NA Intergenic HAL1|LINE|L1 -85825 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 734-11 chr11 21208909 21209222 + 4 NA intron (NM_201551, intron 13 of 18) MamGypLTR1b|LTR|Gypsy 539479 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 1382-5 chr8 46369287 46370026 + 4 NA Intergenic ALR/Alpha|Satellite|centr 247987 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 626-117 chr5 67648314 67648524 + 4 NA Intergenic Intergenic -1630 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 489-193 chr4 70320426 70320631 + 4 NA Intergenic Intergenic -14453 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 1007-5 chr2 18268792 18269160 + 4 NA Intergenic Intergenic 291677 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 1348-5 chr2 75128881 75129703 + 4 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 38480 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 2963 chr2 126543406 126544969 + 4 NA Intergenic L1MCa|LINE|L1 -111748 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 874-21 chr3 180233727 180234151 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR -180234 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 1325-6 chr7 40947319 40948095 + 4 NA Intergenic L1M4|LINE|L1 32232 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 1078-14 chr6 54590096 54590540 + 4 NA Intergenic L1MC1|LINE|L1 -256453 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 669-120 chr9 30104581 30104814 + 4 NA Intergenic Intergenic 303757 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 747-73 chr9 74844326 74844589 + 4 NA intron (NM_017662, intron 3 of 38) Tigger1|DNA|TcMar-Tigger 42890 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 1235 chr10 111041803 111042397 + 4 NA Intergenic L1M1|LINE|L1 -34929 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 608-12 chr10 69621327 69621639 + 4 NA Intergenic Intergenic -8764 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 564-127 chr3 109208663 109208936 + 4 NA Intergenic MamTip1|DNA|hAT-Tip100 30634 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 950-24 chr4 133880518 133880969 + 4 NA Intergenic Intergenic 321046 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 599-13 chr10 44905334 44905604 + 4 NA intron (NR_033842, intron 2 of 7) MLT1F|LTR|ERVL-MaLR -5847 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 851-9 chr12 125578422 125578768 + 4 NA intron (NM_052907, intron 4 of 8) L1MB8|LINE|L1 -43857 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 674-25 chr13 99751637 99751874 + 4 NA intron (NR_120421, intron 4 of 4) L1MB3|LINE|L1 -22754 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 989-16 chr22 36735634 36736122 + 4 NA intron (NR_134623, intron 2 of 3) intron (NR_134623, intron 2 of 3) 32002 NR_134623 105373021 Hs.401697 NR_134623 LOC105373021 - uncharacterized LOC105373021 ncRNA 610-115 chr3 64786401 64786698 + 4 NA intron (NR_038264, intron 1 of 5) L1M5|LINE|L1 -98549 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 493-301 chr8 124683166 124683410 + 4 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 45185 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 1129-6 chr16 5703207 5703742 + 4 NA Intergenic L2b|LINE|L2 71007 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 556-58 chr13 53441536 53441749 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -289742 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 544-149 chr3 83401323 83401541 + 4 NA Intergenic Intergenic 1415290 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 805-27 chr22 19648252 19648620 + 4 NA Intergenic L1M4|LINE|L1 -66067 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 1085 chr10 35490912 35491323 + 4 NA intron (NM_181698, intron 4 of 11) intron (NM_181698, intron 4 of 11) -114224 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 976-19 chr4 181840728 181841211 + 4 NA Intergenic Intergenic -10996 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 664-12 chr1 195236871 195237057 + 4 NA Intergenic Intergenic 851751 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 470-214 chr5 58198019 58198220 + 4 NA Intergenic Intergenic -75778 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 888-41 chr9 96822323 96822654 + 4 NA intron (NM_001001662, intron 5 of 5) intron (NM_001001662, intron 5 of 5) 32026 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 1258-9 chr7 37106088 37106751 + 4 NA intron (NM_001206480, intron 14 of 21) MLT1A1|LTR|ERVL-MaLR 108623 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 654-54 chr19 33716724 33716948 + 4 NA intron (NM_001127895, intron 3 of 4) MLT1B|LTR|ERVL-MaLR 32308 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 774-72 chr5 84697699 84698022 + 4 NA Intergenic L1M1|LINE|L1 -312980 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 1156-3 chr15 69669485 69669915 + 4 NA intron (NR_126437, intron 3 of 5) MIR3|SINE|MIR 77500 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 409-83 chr14 82327958 82328099 + 4 NA Intergenic Intergenic -314604 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 700-70 chr4 43439551 43439866 + 4 NA Intergenic Intergenic 52835 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 681-5 chr10 76364024 76364365 + 4 NA intron (NM_001305581, intron 6 of 6) L2c|LINE|L2 -523850 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 753-42 chr3 170601416 170601702 + 4 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -15484 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 901-15 chr18 67845430 67845845 + 4 NA intron (NR_033921, intron 3 of 4) L1MEf|LINE|L1 -30815 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 634-114 chr4 88577167 88577510 + 4 NA Intergenic Intergenic -15085 NM_001271602 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 878-37 chr5 148266039 148266556 + 4 NA Intergenic MER31-int|LTR|ERV1 -2497 NR_138538 153218 Hs.483771 NM_001040129 ENSG00000214510 SPINK13 HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding 936-23 chr3 124306998 124307392 + 4 NA intron (NM_001024660, intron 6 of 59) L1MB8|LINE|L1 -67137 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 863-53 chr9 137861032 137861372 + 4 NA Intergenic L1MEf|LINE|L1 -16580 NM_000718 774 Hs.495522 NM_000718 ENSG00000148408 CACNA1B BIII|CACNL1A5|CACNN|Cav2.2|DYT23 calcium voltage-gated channel subunit alpha1 B protein-coding 606-119 chr4 72948215 72948446 + 4 NA Intergenic Intergenic 121386 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 772-14 chr12 37917648 37918011 + 4 NA Intergenic ALR/Alpha|Satellite|centr -398945 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 959-15 chr17 72824347 72824870 + 4 NA intron (NM_001352692, intron 6 of 9) MSTA-int|LTR|ERVL-MaLR -184136 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 893-37 chr6 40036166 40036574 + 4 NA Intergenic Intergenic -101908 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 896-8 chr14 63146354 63146753 + 4 NA Intergenic L1MA5|LINE|L1 -57890 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 426-308 chr9 27776735 27776902 + 4 NA Intergenic Intergenic -202952 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 962-25 chrUn_GL000216v2 72888 73480 + 4 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 744-43 chr3 3658274 3658618 + 4 NA Intergenic Intergenic -140985 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 612-27 chr11 50624722 50624999 + 4 NA Intergenic ALR/Alpha|Satellite|centr 215713 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1103-9 chr22 49216318 49216707 + 4 NA Intergenic L1M4b|LINE|L1 326954 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 618-78 chr3 109592 109854 + 4 NA Intergenic MIR|SINE|MIR -86873 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 548-45 chr12 12651774 12651947 + 4 NA Intergenic MER51B|LTR|ERV1 39984 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 542-212 chr7 157901405 157901686 + 4 NA intron (NM_130843, intron 10 of 21) MER63D|DNA|hAT-Blackjack 46960 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 604-132 chr5 53772740 53772967 + 4 NA Intergenic L1M1|LINE|L1 46829 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 717-56 chr3 88500289 88500507 + 4 NA Intergenic MamRep137|DNA|TcMar-Tigger 161942 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 760-39 chr20 13196643 13197032 + 4 NA Intergenic Intergenic -24437 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 966-15 chr2 170184814 170185227 + 4 NA intron (NM_001083615, intron 1 of 33) L1MA3|LINE|L1 6873 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 1120-3 chr14 71881782 71882355 + 4 NA Intergenic L1MB3|LINE|L1 -50103 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 711-11 chr11 31091106 31091513 + 4 NA intron (NM_001367979, intron 17 of 38) intron (NM_001367979, intron 17 of 38) -98623 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 361-408 chr7 20944318 20944473 + 4 NA intron (NR_126381, intron 2 of 5) L2a|LINE|L2 108964 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 575-24 chr10 131299675 131299905 + 4 NA intron (NM_174937, intron 3 of 11) L1ME1|LINE|L1 11931 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 759-54 chr4 108547601 108547884 + 4 NA intron (NR_026968, intron 2 of 3) L1MA4A|LINE|L1 -9491 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 1281-6 chr7 87765454 87766094 + 4 NA intron (NM_138290, intron 7 of 11) L1PA17|LINE|L1 -52451 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 784-6 chr1 232344820 232345238 + 4 NA Intergenic Intergenic 170579 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 1235-4 chr6 40025496 40026205 + 4 NA Intergenic MSTD|LTR|ERVL-MaLR -91388 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 685-75 chr4 126348249 126348519 + 4 NA Intergenic Intergenic 841125 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 828-12 chr11 92567990 92568385 + 4 NA intron (NM_001008781, intron 2 of 24) L2a|LINE|L2 216091 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1314-4 chr4 76241819 76242478 + 4 NA intron (NM_001242936, intron 2 of 7) MSTB|LTR|ERVL-MaLR -9552 NM_001242939 100631383 Hs.720509 NM_001242939 ENSG00000272414 FAM47E-STBD1 FAM47E FAM47E-STBD1 readthrough protein-coding 345-9 chr1 52940678 52940896 + 4 NA intron (NM_001193617, intron 1 of 14) AluSx|SINE|Alu 13511 NM_001193617 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 579-69 chr2 106305647 106305881 + 4 NA Intergenic L1MCa|LINE|L1 -63981 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 762-55 chr5 107152332 107152599 + 4 NA Intergenic Intergenic -141451 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 598-62 chr19 11869002 11869191 + 4 NA 3' UTR (NM_001348718, exon 4 of 4) 3' UTR (NM_001348718, exon 4 of 4) 3067 NM_152262 90594 Hs.528731 NM_152262 ENSG00000171291 ZNF439 - zinc finger protein 439 protein-coding 2627 chr17 62984527 62985719 + 4 NA intron (NM_025185, intron 1 of 25) L1M2c|LINE|L1 18888 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 812-40 chr5 112154148 112154443 + 4 NA intron (NM_001347887, intron 22 of 23) intron (NM_001347887, intron 22 of 23) -6231 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 1192-9 chr8 83722399 83723049 + 4 NA Intergenic Intergenic 318966 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 280-12 chr1 77180347 77180470 + 4 NA intron (NM_005482, intron 3 of 10) Charlie7a|DNA|hAT-Charlie 39022 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 300-354 chr5 24525076 24525153 + 4 NA intron (NM_001362460, intron 5 of 9) intron (NM_001362460, intron 5 of 9) 119864 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 894-27 chr4 20140274 20140604 + 4 NA Intergenic L1PA7|LINE|L1 -111466 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 770-53 chr4 10727803 10728038 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -43152 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 676-111 chr8 130217261 130217472 + 4 NA intron (NM_001362925, intron 4 of 29) intron (NM_001362925, intron 4 of 29) 79167 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 688-30 chr12 19668188 19668614 + 4 NA Intergenic Intergenic 227802 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 1015-20 chr8 122166211 122166662 + 4 NA Intergenic L1MEd|LINE|L1 402208 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 550-150 chr3 104363220 104363415 + 4 NA Intergenic Intergenic -839201 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 633-57 chr2 5262902 5263264 + 4 NA Intergenic Intergenic 428035 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 543-144 chr2 239636510 239636788 + 4 NA Intergenic MLT1E|LTR|ERVL-MaLR -126211 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 1006-30 chr8 88625693 88626116 + 4 NA Intergenic L1MCb|LINE|L1 -298421 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 1043-8 chr3 111604491 111605191 + 4 NA intron (NM_001318889, intron 7 of 7) MER58A|DNA|hAT-Charlie -9495 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 1519-3 chr3 130607228 130607898 + 4 NA intron (NM_001102608, intron 20 of 35) L1MEi|LINE|L1 47229 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 345-487 chr7 24569241 24569327 + 4 NA Intergenic Intergenic -4168 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 678-25 chr13 80677616 80677825 + 4 NA Intergenic L1MA1|LINE|L1 -336594 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 358-213 chr2 77553221 77553324 + 4 NA Intergenic Intergenic -30839 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 666-51 chr2 14676420 14676665 + 4 NA Intergenic Intergenic 43825 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 711-74 chr8 139265747 139266074 + 4 NA Intergenic MIRc|SINE|MIR -351869 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 881-33 chr6 35703399 35703773 + 4 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) -14644 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 878-39 chr6 20821923 20822161 + 4 NA intron (NM_017774, intron 8 of 15) MER58A|DNA|hAT-Charlie 287585 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 788-6 chr10 128594218 128594466 + 4 NA Intergenic HSMAR1|DNA|TcMar-Mariner 308392 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 780-14 chr12 23953010 23953352 + 4 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -2149 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 1024-20 chr3 104288182 104288551 + 4 NA Intergenic MER101-int|LTR|ERV1 -764250 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 745-74 chr8 21675880 21676101 + 4 NA Intergenic Intergenic 112885 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 1379-2 chr10 118685992 118686767 + 4 NA intron (NM_153810, intron 8 of 8) intron (NM_153810, intron 8 of 8) 68591 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 1644-2 chr7 48187447 48188335 + 4 NA intron (NM_152701, intron 1 of 61) HAL1b|LINE|L1 16433 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 934-4 chr1 224931830 224932281 + 4 NA intron (NM_001349912, intron 1 of 5) L1MA4A|LINE|L1 2380 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 666-104 chr6 142113633 142113818 + 4 NA intron (NM_001324308, intron 1 of 2) intron (NM_001324308, intron 1 of 2) -19434 NM_001358410 100126572 NM_001358410 ENSG00000203733 GJE1 CX23 gap junction protein epsilon 1 protein-coding 276-434 chr7 94873701 94873813 + 4 NA Intergenic MER31-int|LTR|ERV1 -33837 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 1248 chr10 33070467 33070993 + 4 NA Intergenic MER96B|DNA|hAT 46077 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 1336 chr1 71130997 71131735 + 4 NA intron (NR_046217, intron 2 of 3) L1MA9|LINE|L1 50042 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 613-58 chr2 57338571 57338898 + 4 NA Intergenic L2c|LINE|L2 -568917 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 617-3 chr1 84288102 84288331 + 4 NA Intergenic L1M6|LINE|L1 -10322 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 683-12 chr10 121004712 121004980 + 4 NA Intergenic L1PA15-16|LINE|L1 153484 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 799-17 chr16 24238124 24238547 + 4 NA intron (NR_146569, intron 1 of 3) MLT1A|LTR|ERVL-MaLR 2231 NR_146569 105371142 Hs.128031 NR_146569 ENSG00000260264 LINC2194 - long intergenic non-protein coding RNA 2194 ncRNA 1050-15 chr8 113694892 113695410 + 4 NA Intergenic L1M4|LINE|L1 -258212 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 521-66 chr12 54530773 54530941 + 4 NA intron (NM_001184976, intron 22 of 30) MIRc|SINE|MIR -18536 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 770-45 chr2 217173932 217174393 + 4 NA Intergenic Intergenic -108571 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 728-36 chr15 82030830 82031050 + 4 NA Intergenic Intergenic 15078 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 926-2 chr1 94572518 94572927 + 4 NA Intergenic LTR7|LTR|ERV1 29020 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 597-67 chr2 51238817 51239073 + 4 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 206344 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 1199-10 chr2 201341170 201341543 + 4 NA intron (NR_110620, intron 6 of 13) intron (NR_110620, intron 6 of 13) 15989 NR_110620 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 1268-4 chr15 67654533 67655162 + 4 NA intron (NM_001206804, intron 11 of 21) AluSx|SINE|Alu 105753 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 1193-9 chr7 46473126 46473768 + 4 NA Intergenic L1MB3|LINE|L1 223675 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 1313 chr1 177553696 177554244 + 4 NA Intergenic L1MEc|LINE|L1 -146554 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 1108-5 chr12 4479895 4480379 + 4 NA Intergenic L1MEf|LINE|L1 -34523 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 652-3 chr1 50992348 50992685 + 4 NA Intergenic Intergenic 22271 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 532-232 chr6 144422754 144422917 + 4 NA intron (NM_007124, intron 3 of 73) intron (NM_007124, intron 3 of 73) 17180 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 450-180 chr22 26929245 26929406 + 4 NA Intergenic Intergenic 26033 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 657-6 chr1 106359551 106359821 + 4 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -331433 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 1008-18 chr6 136206035 136206355 + 4 NA Intergenic Intergenic 44116 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 536-113 chr2 40080081 40080313 + 4 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 162563 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 734-59 chr5 61190362 61190651 + 4 NA intron (NR_109908, intron 3 of 3) intron (NR_109908, intron 3 of 3) -28038 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 667-70 chr3 191178229 191178482 + 4 NA Intergenic Intergenic -20886 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 876-29 chr5 32833257 32833626 + 4 NA Intergenic MamRep434|DNA|TcMar-Tigger -114002 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 658-101 chr5 156584684 156585067 + 4 NA intron (NM_001128209, intron 3 of 7) Tigger19b|DNA|TcMar-Tigger 257711 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 728-48 chr2 83929736 83930271 + 4 NA Intergenic L1M3|LINE|L1 -360679 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 740-5 chr1 152258430 152258768 + 4 NA Intergenic L1M2|LINE|L1 -34403 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 629-20 chr10 62333112 62333339 + 4 NA Intergenic L1MB5|LINE|L1 -40932 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 466-184 chr4 33568587 33568792 + 4 NA Intergenic AluY|SINE|Alu 471204 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 2333 chr2 204763098 204764480 + 4 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 218314 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 726-22 chr13 57065746 57065936 + 4 NA Intergenic Intergenic -75077 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 690-18 chr11 97357786 97358060 + 4 NA Intergenic Intergenic 849498 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 359-479 chr8 88000547 88000752 + 4 NA Intergenic Intergenic -126634 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 466-234 chr6 146072740 146072869 + 4 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 43606 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 730-3 chr1 90860577 90860848 + 4 NA Intergenic L1M5|LINE|L1 8953 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 318-534 chr8 61387988 61388131 + 4 NA intron (NM_173519, intron 3 of 5) L1ME4a|LINE|L1 100089 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 1994-2 chr12 133103319 133104307 + 4 NA intron (NM_001300778, intron 5 of 5) intron (NM_001300778, intron 5 of 5) 23610 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 363-296 chr3 116605315 116605541 + 4 NA Intergenic (ATAAT)n|Simple_repeat|Simple_repeat 52955 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 518-161 chr20 44096936 44097154 + 4 NA Intergenic AluYc|SINE|Alu 90143 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 489-26 chr10 43522636 43522877 + 4 NA Intergenic AluSx1|SINE|Alu 45703 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 875-28 chr5 2943944 2944375 + 4 NA Intergenic L1MEg|LINE|L1 26305 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 900-27 chr3 61602648 61602924 + 4 NA intron (NM_002841, intron 1 of 29) MER63B|DNA|hAT-Blackjack 41215 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 465-52 chr11 80572078 80572215 + 4 NA Intergenic L1MB3|LINE|L1 190657 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 502-82 chr14 37339369 37339559 + 4 NA intron (NM_138731, intron 10 of 13) L1ME2|LINE|L1 141527 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 459-103 chr16 81997244 81997372 + 4 NA 3' UTR (NM_145168, exon 3 of 3) 3' UTR (NM_145168, exon 3 of 3) 14162 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 391-19 chr1 182821178 182821299 + 4 NA intron (NM_001200052, intron 10 of 11) intron (NM_001200052, intron 10 of 11) -18109 NM_001357 1660 Hs.191518 NM_001357 ENSG00000135829 DHX9 DDX9|LKP|NDH2|NDHII|RHA DExH-box helicase 9 protein-coding 409-218 chr4 37579203 37579429 + 4 NA intron (NM_001104629, intron 2 of 3) L1MA3|LINE|L1 -4917 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 822-62 chr8 133950128 133950431 + 4 NA Intergenic L1MB3|LINE|L1 63783 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 901-16 chr19 37648462 37648899 + 4 NA intron (NM_001320666, intron 2 of 5) MER5A|DNA|hAT-Charlie 6785 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 725-33 chr2 56673837 56674216 + 4 NA Intergenic Intergenic -488256 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 390-365 chr7 113674361 113674465 + 4 NA Intergenic MLT1A1|LTR|ERVL-MaLR 244596 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 1084-4 chr11 92163537 92164191 + 4 NA Intergenic Intergenic -61170 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1050-4 chr14 45758525 45758909 + 4 NA Intergenic Intergenic -43115 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 939-22 chr6 69358933 69359516 + 4 NA intron (NM_001704, intron 28 of 31) intron (NM_001704, intron 28 of 31) 437242 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 1761 chr22 48107688 48108410 + 4 NA Intergenic L1MC|LINE|L1 -166315 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 421-294 chr8 75491154 75491325 + 4 NA intron (NM_001330561, intron 3 of 11) MIR|SINE|MIR -48729 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 474 chr1 14379958 14380158 + 4 NA intron (NR_149058, intron 3 of 4) L1MA3|LINE|L1 39915 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 660-84 chr5 106036018 106036292 + 4 NA Intergenic LTR16A1|LTR|ERVL 936681 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 817-46 chr6 156425034 156425305 + 4 NA Intergenic Intergenic 46419 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 676-108 chr8 83255590 83255784 + 4 NA Intergenic Intergenic -148071 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 633-116 chr7 54096677 54097045 + 4 NA Intergenic Intergenic -233836 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 834-41 chr6 81287497 81287735 + 4 NA Intergenic Intergenic 465065 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 835-10 chr11 81710067 81710494 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR 180556 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 622-149 chr8 140381697 140381929 + 4 NA intron (NM_001160372, intron 7 of 22) L1MB7|LINE|L1 75931 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 496-92 chr14 83835279 83835433 + 4 NA Intergenic Intergenic 1192724 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 718-9 chr1 175507853 175508271 + 4 NA intron (NM_003285, intron 2 of 22) L1PA8|LINE|L1 235533 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 744-62 chr6 140512168 140512472 + 4 NA Intergenic L1MD2|LINE|L1 -171494 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 555-76 chr19 36394208 36394448 + 4 NA intron (NM_001321917, intron 4 of 4) MER5A|DNA|hAT-Charlie -15127 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 1391-6 chr9 94190016 94190529 + 4 NA intron (NR_160773, intron 2 of 2) L1PB3|LINE|L1 11438 NR_029481 406886 NR_029481 ENSG00000199133 MIRLET7D LET7D|MIRNLET7D|hsa-let-7d|let-7d microRNA let-7d ncRNA 664-65 chr20 56333452 56333706 + 4 NA Intergenic Intergenic -25395 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 758-72 chr7 53571982 53572328 + 4 NA Intergenic Intergenic 239776 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1244 chr10 18895123 18895513 + 4 NA Intergenic L1ME3E|LINE|L1 -153483 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 520-82 chr14 43464744 43465006 + 4 NA Intergenic Intergenic 1042408 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 387-8 chr1 106924861 106925022 + 4 NA Intergenic MER5A1|DNA|hAT-Charlie 106702 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 472-183 chr20 9030712 9030926 + 4 NA Intergenic Intergenic -38235 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 1094-10 chr5 23975642 23976177 + 4 NA intron (NR_131245, intron 1 of 4) L1M4b|LINE|L1 24561 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 629-131 chr8 110307034 110307329 + 4 NA Intergenic Intergenic -331410 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 628-70 chr2 67104243 67104509 + 4 NA intron (NR_110564, intron 1 of 4) LTR8A|LTR|ERV1 17930 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 940-12 chr2 53618066 53618578 + 4 NA Intergenic Intergenic -149461 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 567-98 chr20 16633302 16633482 + 4 NA Intergenic L1ME1|LINE|L1 -59944 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 636-40 chr14 32166018 32166245 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -35914 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 367-448 chr8 77719471 77719608 + 4 NA Intergenic MER5A|DNA|hAT-Charlie 268842 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 399-260 chr5 163528578 163528837 + 4 NA Intergenic HAL1|LINE|L1 23088 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 1261-2 chr2 126421163 126421703 + 4 NA Intergenic L1MEg|LINE|L1 -234502 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 766-78 chrX 97649980 97650350 + 4 NA Intergenic L1M4|LINE|L1 -85630 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 760-77 chr8 133006847 133007152 + 4 NA intron (NM_003235, intron 35 of 47) intron (NM_003235, intron 35 of 47) 39582 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 805-34 chr4 54745827 54746209 + 4 NA Intergenic Intergenic 88090 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 573-174 chr6 144978375 144978560 + 4 NA Intergenic Arthur1|DNA|hAT-Tip100 572812 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 551-53 chr14 62301772 62302058 + 4 NA Intergenic Intergenic -161942 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 868-25 chr3 54402078 54402490 + 4 NA intron (NM_018398, intron 4 of 37) L1MA6|LINE|L1 237573 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 240-262 chr20 50984684 50984749 + 4 NA Intergenic Intergenic 25898 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 660-52 chr20 10126364 10126593 + 4 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) 91491 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 967-6 chr13 40204658 40204999 + 4 NA intron (NR_033877, intron 2 of 5) intron (NR_033877, intron 2 of 5) 15674 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 484-201 chr5 4776691 4776883 + 4 NA Intergenic Intergenic 3306 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 626-28 chr11 110927482 110927725 + 4 NA Intergenic Intergenic 169715 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 1131-6 chr21 20389463 20389946 + 4 NA Intergenic Intergenic -131019 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 613-48 chr18 14102358 14102655 + 4 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 29929 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 842-47 chr7 69872115 69872413 + 4 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 273789 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 729-17 chr11 110046125 110046375 + 4 NA Intergenic Intergenic -47142 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 844-29 chr19 31019448 31019791 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR -147891 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 1002-3 chr11 115005419 115005897 + 4 NA Intergenic Intergenic 327131 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 1030-23 chr8 103921236 103921624 + 4 NA intron (NR_145711, intron 7 of 21) intron (NR_145711, intron 7 of 21) 102210 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 803-39 chr4 107046251 107046618 + 4 NA Intergenic L1M8|LINE|L1 -10121 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 716-88 chr8 140034796 140035121 + 4 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 65577 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1655-2 chr11 16677266 16677906 + 4 NA intron (NM_001367872, intron 2 of 16) L1MEc|LINE|L1 60891 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 537-155 chr3 65185786 65185963 + 4 NA Intergenic Intergenic -497874 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 1065-14 chr8 48415374 48415957 + 4 NA Intergenic L1MB5|LINE|L1 -135902 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 567-42 chr12 15571661 15571918 + 4 NA intron (NM_030671, intron 7 of 13) intron (NM_030671, intron 7 of 13) 25178 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 594-149 chr8 111303754 111304015 + 4 NA Intergenic MIR|SINE|MIR -67681 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 841-3 chr11 45708334 45708748 + 4 NA Intergenic L2|LINE|L2 -13767 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 861-28 chr7 86429106 86429355 + 4 NA Intergenic Intergenic -214679 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 1107-9 chr6 162434757 162435311 + 4 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -292098 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 710-50 chr20 2623739 2624036 + 4 NA intron (NM_080751, intron 16 of 19) intron (NM_080751, intron 16 of 19) -28745 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 1971 chr14 63922448 63923311 + 4 NA intron (NM_015180, intron 2 of 114) MER5A|DNA|hAT-Charlie 69875 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 1068-10 chr2 28308234 28308601 + 4 NA non-coding (NR_038319, exon 3 of 3) non-coding (NR_038319, exon 3 of 3) 2042 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 639-60 chr2 78793145 78793377 + 4 NA Intergenic HUERS-P2-int|LTR|ERV1 -232441 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 1125-16 chr9 80255890 80256453 + 4 NA Intergenic L1ME3A|LINE|L1 281148 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 761-76 chr8 138715037 138715377 + 4 NA intron (NM_152888, intron 30 of 64) intron (NM_152888, intron 30 of 64) 198834 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 931-4 chr12 34583965 34584222 + 4 NA Intergenic ALR/Alpha|Satellite|centr 561597 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1440 chr19 37800998 37801735 + 4 NA Intergenic L1M4c|LINE|L1 -16045 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 562-142 chr3 51032294 51032450 + 4 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) -352919 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 482-8 chr1 76424968 76425207 + 4 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 350341 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 703-93 chr8 89103745 89104062 + 4 NA Intergenic L1MB1|LINE|L1 653808 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 628-19 chr1 218098374 218098575 + 4 NA Intergenic L2b|LINE|L2 54969 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 934-32 chr8 118213997 118214429 + 4 NA intron (NM_001101676, intron 4 of 4) X9_LINE|LINE|L1 -102394 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 642-67 chr21 32137170 32137422 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -51001 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 280-276 chr4 30520267 30520414 + 4 NA Intergenic L1MD|LINE|L1 -200029 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 646-44 chr16 83682280 83682532 + 4 NA intron (NM_001220489, intron 9 of 12) LTR43|LTR|ERV1 121570 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 1537 chr1 125179748 125180429 + 4 NA Intergenic (ATTCCATTCG)n|Simple_repeat|Simple_repeat 3660976 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 742-41 chr2 122411208 122411444 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR 655675 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 789-10 chr12 10453616 10453969 + 4 NA promoter-TSS (NM_007328) promoter-TSS (NM_007328) -415 NM_007328 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 1441-2 chr19 40013293 40014121 + 4 NA exon (NM_001297763, exon 7 of 7) exon (NM_001297763, exon 7 of 7) 16647 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 547-3 chr1 59532651 59532836 + 4 NA intron (NM_001278224, intron 1 of 9) L1ME3|LINE|L1 17113 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 1713-2 chr8 122334921 122335739 + 4 NA Intergenic Tigger6a|DNA|TcMar-Tigger 233314 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 762-16 chr12 19984904 19985231 + 4 NA Intergenic MIR|SINE|MIR -29618 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 719-43 chr20 43783724 43783928 + 4 NA Intergenic (TTTTTC)n|Simple_repeat|Simple_repeat -56824 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 764-20 chr12 84389013 84389349 + 4 NA Intergenic L1MC1|LINE|L1 523618 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 997-7 chr14 53836232 53836633 + 4 NA Intergenic Intergenic 112052 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 1576 chr1 114252517 114253070 + 4 NA Intergenic Intergenic -98924 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 617-9 chr1 221229961 221230251 + 4 NA Intergenic L2a|LINE|L2 106190 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 911-19 chr3 110132600 110133097 + 4 NA Intergenic L1ME1|LINE|L1 530020 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 746-29 chr16 83755849 83756113 + 4 NA intron (NM_001220489, intron 10 of 12) L1ME3A|LINE|L1 47995 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 553-125 chr2 122475366 122475561 + 4 NA Intergenic HERV16-int|LTR|ERVL 598018 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 459-24 chr10 11515133 11515381 + 4 NA intron (NM_014688, intron 5 of 14) intron (NM_014688, intron 5 of 14) 17023 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 933-38 chr7 29001500 29001906 + 4 NA intron (NR_038965, intron 4 of 4) intron (NR_038965, intron 4 of 4) 21736 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 512-258 chr7 53494457 53494607 + 4 NA Intergenic L1MA9|LINE|L1 317399 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 732-22 chr12 14606879 14607200 + 4 NA intron (NR_120465, intron 2 of 5) L1M1|LINE|L1 -39156 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 520-288 chr7 130258865 130259080 + 4 NA Intergenic MER61-int|LTR|ERV1 -7891 NM_001869 1358 Hs.490038 NM_001869 ENSG00000158516 CPA2 - carboxypeptidase A2 protein-coding 552-156 chr4 71772254 71772466 + 4 NA intron (NM_000583, intron 1 of 12) intron (NM_000583, intron 1 of 12) 11719 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 974-20 chr8 81905129 81905553 + 4 NA Intergenic MER53|DNA|hAT -63055 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 736-52 chr3 26246021 26246329 + 4 NA Intergenic Intergenic -372480 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 813-34 chr5 128096702 128097114 + 4 NA intron (NM_001046, intron 1 of 26) intron (NM_001046, intron 1 of 26) 13142 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 720-83 chr7 62714995 62715209 + 4 NA Intergenic ALR/Alpha|Satellite|centr 588954 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 820-27 chr2 40944081 40944561 + 4 NA Intergenic Intergenic -431886 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 564-145 chr4 144397923 144398106 + 4 NA Intergenic L1MEf|LINE|L1 248005 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 950-22 chr3 121976735 121977197 + 4 NA Intergenic MER5A|DNA|hAT-Charlie 45281 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 603-48 chr14 56975094 56975356 + 4 NA Intergenic L1M6|LINE|L1 162067 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 642-88 chr5 6169473 6169657 + 4 NA Intergenic L1MA8|LINE|L1 167727 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 732-86 chr7 55938194 55938513 + 4 NA intron (NM_182633, intron 6 of 6) LTR78|LTR|ERV1 -13524 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 1032-20 chr6 48691590 48692084 + 4 NA Intergenic L1PREC2|LINE|L1 -623148 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 619-9 chr1 115201475 115201760 + 4 NA Intergenic L1PB3|LINE|L1 -81417 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 752-71 chr8 111481216 111481407 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 104672 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 570-123 chr20 33873517 33873802 + 4 NA Intergenic Intergenic 62311 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 762-44 chr3 114772939 114773206 + 4 NA intron (NM_001164343, intron 4 of 11) MLT1E2|LTR|ERVL-MaLR -13965 NM_001164345 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 750-55 chr4 72933141 72933448 + 4 NA Intergenic L1M1|LINE|L1 136422 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 616-169 chr8 56652726 56652949 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -93014 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 1016-17 chr5 114666018 114666498 + 4 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 90217 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 666-79 chr3 88894299 88894624 + 4 NA Intergenic L2a|LINE|L2 -213160 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 797-10 chr11 78778671 78778996 + 4 NA intron (NM_001098816, intron 16 of 33) intron (NM_001098816, intron 16 of 33) -203969 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 644-78 chr5 105144269 105144515 + 4 NA Intergenic Intergenic 44918 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 720-91 chr8 134197426 134197739 + 4 NA Intergenic L2c|LINE|L2 311086 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 665-64 chr4 36687944 36688295 + 4 NA Intergenic L1PA16|LINE|L1 -46219 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 573-200 chr8 117972267 117972566 + 4 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -51503 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 533-59 chr15 59355578 59355745 + 4 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 17210 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 484-184 chr4 14814361 14814571 + 4 NA intron (NR_126435, intron 2 of 6) MIRb|SINE|MIR 73703 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 725-25 chr16 6853858 6854307 + 4 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 80273 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 798-20 chr15 54943672 54944045 + 4 NA Intergenic MER67D|LTR|ERV1 -112889 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 735-4 chr1 88418625 88418815 + 4 NA Intergenic L1MB3|LINE|L1 -265424 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 433-16 chr1 228228781 228229025 + 4 NA intron (NM_052843, intron 9 of 80) L1MB7|LINE|L1 -15239 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 756-27 chr2 106738641 106738973 + 4 NA Intergenic L1MB5|LINE|L1 147221 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 711 chr1 36732411 36732778 + 4 NA Intergenic Intergenic -249280 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 618-9 chr1 157763427 157763716 + 4 NA intron (NM_001159488, intron 7 of 8) L1M2|LINE|L1 13561 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 679-43 chr17 33655934 33656203 + 4 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -122308 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 545-220 chr7 23985291 23985504 + 4 NA Intergenic L1PB3|LINE|L1 275178 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 601-139 chr7 51833173 51833384 + 4 NA Intergenic L1ME3A|LINE|L1 -440022 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 645-33 chr14 66944490 66944767 + 4 NA intron (NM_020806, intron 8 of 22) MER61-int|LTR|ERV1 -244812 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 600-99 chr5 15974470 15974778 + 4 NA Intergenic L1MC5a|LINE|L1 39442 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 540-156 chr4 54469059 54469217 + 4 NA Intergenic L1MCa|LINE|L1 136246 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 586-169 chrX 38882172 38882435 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -78420 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 616-47 chr15 58271408 58271640 + 4 NA Intergenic L1MEi|LINE|L1 133143 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 1061-2 chr12 14122734 14123264 + 4 NA Intergenic L1MD1|LINE|L1 -142643 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 858-43 chr8 72668486 72668832 + 4 NA intron (NM_004770, intron 2 of 2) L2a|LINE|L2 -63386 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 770-28 chr17 54551181 54551514 + 4 NA Intergenic L1MA5|LINE|L1 -349344 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 573-204 chr8 137205604 137205755 + 4 NA Intergenic MIR|SINE|MIR 207909 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 752-66 chr6 50355682 50356074 + 4 NA Intergenic L1PB3|LINE|L1 -305949 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 993-3 chr11 22443859 22444462 + 4 NA Intergenic Intergenic 47859 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 840-49 chr8 78833286 78833758 + 4 NA Intergenic L1MEg|LINE|L1 -4007 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 492-110 chr18 1907453 1907649 + 4 NA Intergenic Intergenic -547922 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 729-79 chr8 127411563 127411805 + 4 NA intron (NR_117100, intron 5 of 5) Charlie19a|DNA|hAT-Charlie -4141 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 1003-11 chr2 88759049 88759597 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR -6579 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 452-250 chr7 51879502 51879685 + 4 NA Intergenic Intergenic -486337 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 714-60 chr5 86800475 86800710 + 4 NA Intergenic Intergenic 53774 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 490-157 chr2 157044586 157044810 + 4 NA Intergenic Intergenic -213007 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 573-185 chr7 49084287 49084478 + 4 NA Intergenic L1M4a1|LINE|L1 159835 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 699-100 chr7 116201405 116201752 + 4 NA Intergenic L1ME3D|LINE|L1 -8961 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 745-24 chr19 51818499 51818846 + 4 NA intron (NR_163433, intron 9 of 11) L2a|LINE|L2 23515 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 673-73 chr22 28080058 28080262 + 4 NA intron (NM_001145418, intron 12 of 22) L1MB2|LINE|L1 -159548 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 748-64 chr4 57139607 57139875 + 4 NA intron (NR_034081, intron 1 of 4) MER41-int|LTR|ERV1 -29356 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 1307-2 chr10 16365757 16366504 + 4 NA Intergenic MER81|DNA|hAT-Blackjack -70813 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 433-37 chr11 21687206 21687366 + 4 NA Intergenic Intergenic -505799 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 893-15 chr12 42659836 42660143 + 4 NA intron (NR_135027, intron 3 of 4) MER57B2|LTR|ERV1 13406 NR_135027 105369738 Hs.569161 NR_135026 ENSG00000257164 LINC02451 - long intergenic non-protein coding RNA 2451 ncRNA 1118-11 chr2 135326753 135327144 + 4 NA intron (NM_001286569, intron 6 of 21) L1MC5|LINE|L1 190320 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 459-223 chr4 134100052 134100302 + 4 NA Intergenic Intergenic 101612 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 472-148 chr2 30828782 30829056 + 4 NA Intergenic MER57-int|LTR|ERV1 -21473 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 564-196 chr8 5964772 5965198 + 4 NA Intergenic Intergenic 441563 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 910-5 chr10 90771792 90772254 + 4 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 86016 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 668-71 chr4 32887693 32887973 + 4 NA Intergenic Intergenic 536795 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1063-16 chr21 27675289 27675598 + 4 NA Intergenic L1M5|LINE|L1 -46936 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 745-78 chr8 141984947 141985199 + 4 NA Intergenic Intergenic -191266 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 702-101 chr8 91174330 91174649 + 4 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -30996 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 973-25 chr8 139179556 139179885 + 4 NA Intergenic MER61E|LTR|ERV1 -265679 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 662-15 chr11 76618623 76618876 + 4 NA Intergenic L1M4|LINE|L1 51189 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 781-18 chr14 62388503 62388861 + 4 NA Intergenic L1ME2|LINE|L1 -248709 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1062-21 chr8 81475139 81475531 + 4 NA Intergenic L1MB3|LINE|L1 7898 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 442-114 chr18 77707809 77707996 + 4 NA Intergenic L1MA9|LINE|L1 285825 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 530-87 chr16 13285941 13286273 + 4 NA Intergenic MER4A1|LTR|ERV1 384509 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 686-89 chr9 120265605 120265790 + 4 NA Intergenic Intergenic -20647 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 1771 chr2 112205150 112206188 + 4 NA Intergenic L1M4c|LINE|L1 49373 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 874-20 chr3 121947466 121947738 + 4 NA Intergenic Intergenic 53201 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 388-241 chr3 187784934 187785103 + 4 NA Intergenic Intergenic -39550 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 1171-2 chr13 58501757 58502315 + 4 NA Intergenic X6A_LINE|LINE|CR1 -268919 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 1196 chr1 114253803 114254263 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR -100164 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 1093-4 chr16 73636447 73636923 + 4 NA Intergenic L1M5|LINE|L1 249880 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 966-4 chr12 42245174 42245508 + 4 NA Intergenic L1ME4a|LINE|L1 -6973 NR_135139 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 483-300 chrX 94727154 94727439 + 4 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 335930 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 835-44 chr4 67048034 67048355 + 4 NA Intergenic Intergenic 373806 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 500-18 chr1 232484244 232484390 + 4 NA intron (NM_020808, intron 3 of 20) intron (NM_020808, intron 3 of 20) 31291 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 1047-22 chr8 144614757 144615316 + 4 NA intron (NM_001308208, intron 1 of 10) intron (NM_001308208, intron 1 of 10) -1533 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 846-40 chr5 77604151 77604595 + 4 NA Intergenic U3|snRNA|snRNA 34324 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 861-8 chr14 42713759 42714262 + 4 NA Intergenic L1M4|LINE|L1 1107154 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1326-3 chr10 107271489 107272008 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -107042 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 1413-3 chr7 52821423 52822243 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -213800 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 781-65 chr8 122390475 122390752 + 4 NA Intergenic L1MC1|LINE|L1 178031 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 810-5 chr11 21630908 21631161 + 4 NA Intergenic Intergenic -562051 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 591-42 chr14 82426117 82426268 + 4 NA Intergenic Intergenic -216440 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 627-68 chr22 34862008 34862236 + 4 NA intron (NR_138042, intron 3 of 4) MIRb|SINE|MIR 135794 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1367-3 chr7 6684408 6685084 + 4 NA Intergenic Intergenic 22201 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 1011-15 chr4 126846701 126847117 + 4 NA Intergenic L1MC4|LINE|L1 -786048 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 923-25 chr7 94845680 94846142 + 4 NA Intergenic L1MEf|LINE|L1 -61683 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 226-47 chr10 86296889 86296946 + 4 NA intron (NM_017551, intron 2 of 15) L1M5|LINE|L1 -32129 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 630-116 chr6 65590646 65590833 + 4 NA intron (NM_001292009, intron 2 of 43) L1MA6|LINE|L1 -10935 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 628-27 chr10 44533250 44533595 + 4 NA Intergenic L1MDa|LINE|L1 -148325 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 426-34 chr10 115896714 115896872 + 4 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 297996 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 586 chr1 13859795 13859945 + 4 NA Intergenic MER2B|DNA|TcMar-Tigger 110455 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 748-55 chr21 16359787 16360203 + 4 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -59208 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 618-135 chr8 131617932 131618197 + 4 NA Intergenic L1MC3|LINE|L1 -286029 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 510-195 chr3 186032464 186032630 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR 72604 NR_151491 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 738-51 chr5 76649916 76650133 + 4 NA intron (NM_006633, intron 17 of 35) THE1D-int|LTR|ERVL-MaLR -26621 NM_004101 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 1076-19 chr4 144932201 144932692 + 4 NA Intergenic L1PA13|LINE|L1 164936 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 562-180 chr5 82966169 82966428 + 4 NA Intergenic Intergenic 98039 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 1320-5 chr12 46875758 46876213 + 4 NA Intergenic Intergenic -49988 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 901-30 chr5 179093498 179093879 + 4 NA Intergenic L1MA4|LINE|L1 33315 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 756-61 chr8 124251885 124252192 + 4 NA Intergenic Intergenic -4640 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 829-41 chr7 68004745 68005118 + 4 NA Intergenic AluJr|SINE|Alu -15322 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 717-65 chr4 101538253 101538486 + 4 NA Intergenic L1PB1|LINE|L1 190592 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 634-123 chr5 32811809 32812084 + 4 NA Intergenic Intergenic 100625 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 352-359 chr4 56084190 56084294 + 4 NA Intergenic Intergenic -85953 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 1225-3 chr2 101924583 101925249 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -58549 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 858-3 chr10 16163416 16163883 + 4 NA Intergenic L1MB4|LINE|L1 -273294 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 880-48 chr8 99964597 99964945 + 4 NA intron (NM_015668, intron 24 of 27) intron (NM_015668, intron 24 of 27) -39811 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 1134-10 chr2 51195258 51195867 + 4 NA intron (NR_135237, intron 2 of 10) L1MEg|LINE|L1 162961 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 804-67 chr8 34852805 34853193 + 4 NA intron (NR_125746, intron 3 of 3) MER31-int|LTR|ERV1 69078 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 737-2 chr1 88032536 88032789 + 4 NA Intergenic L1MB7|LINE|L1 -651482 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 663-78 chr4 137718456 137718731 + 4 NA Intergenic Intergenic 172862 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 490-272 chr7 64602487 64602755 + 4 NA intron (NR_077227, intron 2 of 2) BSR/Beta|Satellite|Satellite 20011 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 698-35 chr2 13175108 13175314 + 4 NA Intergenic LTR1E|LTR|ERV1 -168198 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 764-7 chr1 247254218 247254582 + 4 NA Intergenic L1MA7|LINE|L1 -1672 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 427-14 chr1 185009279 185009502 + 4 NA TTS (NR_146489) TTS (NR_146489) 7863 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 540-184 chr6 62670334 62670556 + 4 NA Intergenic LTR37-int|LTR|ERV1 -384218 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 1216-9 chr8 101730315 101730887 + 4 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 60368 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 764-68 chr8 77088057 77088385 + 4 NA Intergenic Intergenic -87177 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 639-39 chr14 72269235 72269515 + 4 NA intron (NM_001370288, intron 2 of 16) L2a|LINE|L2 -247445 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 1228-2 chr12 34555768 34556401 + 4 NA Intergenic ALR/Alpha|Satellite|centr 533588 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1216-4 chr16 83758188 83759038 + 4 NA intron (NM_001220489, intron 10 of 12) L1ME3A|LINE|L1 45363 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 613-19 chr10 109982878 109983165 + 4 NA intron (NR_038943, intron 2 of 4) L1MB2|LINE|L1 -13352 NM_001320591 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 595-43 chr13 43342966 43343248 + 4 NA intron (NM_001347966, intron 10 of 17) intron (NM_001347966, intron 10 of 17) -105745 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 623-132 chr8 145011226 145011493 + 4 NA Intergenic Intergenic -8460 NR_023392 286101 Hs.367856 NR_023392 ZNF252P ZNF252 zinc finger protein 252, pseudogene pseudo 779-15 chr12 10785943 10786139 + 4 NA Intergenic MER96B|DNA|hAT-Tip100 16586 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 475-85 chr14 88689228 88689472 + 4 NA intron (NM_183387, intron 17 of 42) L1ME3C|LINE|L1 94930 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 1396 chr1 90594404 90595082 + 4 NA Intergenic AluYk2|SINE|Alu -63007 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 514-167 chr20 15551921 15552147 + 4 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 355194 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 514-117 chr17 34716325 34716599 + 4 NA Intergenic Intergenic 135713 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 671-4 chr1 69075230 69075401 + 4 NA intron (NR_146608, intron 1 of 4) LTR49-int|LTR|ERV1 19417 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 1453-3 chr3 95327909 95328566 + 4 NA Intergenic L1PB3|LINE|L1 354956 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 881-4 chr10 94742492 94742867 + 4 NA Intergenic L1PA15|LINE|L1 -20002 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 1081-17 chr8 137406610 137407055 + 4 NA intron (NR_125428, intron 2 of 2) intron (NR_125428, intron 2 of 2) 6756 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 538-24 chr10 31355848 31356045 + 4 NA intron (NM_001323658, intron 2 of 8) L2b|LINE|L2 34286 NM_001323675 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 757-52 chr5 178921316 178921778 + 4 NA intron (NM_030613, intron 4 of 4) L1MD2|LINE|L1 -19651 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 1060-22 chr6 74505379 74505708 + 4 NA intron (NR_110856, intron 2 of 3) L1M1|LINE|L1 436092 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 1250-2 chr20 19595084 19595747 + 4 NA intron (NM_020689, intron 6 of 16) intron (NM_020689, intron 6 of 16) -291106 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 1711-2 chr20 59538107 59538965 + 4 NA Intergenic L1M1|LINE|L1 -38973 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 721-31 chr18 50241002 50241355 + 4 NA intron (NM_145020, intron 6 of 7) LTR69|LTR|ERVL 25317 NM_145020 220136 Hs.658630 NM_145020 ENSG00000172361 CFAP53 CCDC11|HTX6 cilia and flagella associated protein 53 protein-coding 532-134 chr2 165181169 165181359 + 4 NA intron (NM_006922, intron 2 of 27) Charlie1a|DNA|hAT-Charlie 22786 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 1546-4 chr9 30412400 30413359 + 4 NA Intergenic L1M1|LINE|L1 -4425 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 645-44 chr17 66216900 66217110 + 4 NA intron (NM_000042, intron 5 of 7) intron (NM_000042, intron 5 of 7) 12410 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 580-203 chr8 130262847 130263119 + 4 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 33550 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 749-88 chr8 46398869 46399193 + 4 NA Intergenic ALR/Alpha|Satellite|centr 218612 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 563-28 chr11 26372717 26372920 + 4 NA intron (NM_031418, intron 1 of 26) L2a|LINE|L2 40688 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 653-99 chr5 44123105 44123306 + 4 NA Intergenic L1PBa|LINE|L1 -265527 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 607 chr1 18515729 18515945 + 4 NA Intergenic L1MB7|LINE|L1 34907 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 1379-3 chr11 114686749 114687404 + 4 NA intron (NM_182495, intron 2 of 5) L1PA17|LINE|L1 8549 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 583-64 chr16 60887206 60887482 + 4 NA Intergenic Intergenic 168422 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 600-93 chr4 63500687 63500875 + 4 NA Intergenic Intergenic 908669 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 367-115 chr13 82126641 82126842 + 4 NA Intergenic (TATAAT)n|Simple_repeat|Simple_repeat -899758 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 566-72 chr18 8953650 8953948 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -148900 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 602-54 chr2 45229803 45230029 + 4 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 25025 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 729-73 chr7 92951480 92951731 + 4 NA Intergenic L3|LINE|CR1 -114978 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 560-35 chr12 40836675 40836898 + 4 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 8848 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 463-322 chrY 11294122 11294309 + 4 NA Intergenic Intergenic 1127375 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 454-221 chr3 175492936 175493110 + 4 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 123483 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 1023-18 chr4 14474452 14475063 + 4 NA intron (NR_126435, intron 6 of 6) intron (NR_126435, intron 6 of 6) 362789 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 578-49 chr12 79008862 79009048 + 4 NA intron (NM_001291901, intron 2 of 9) intron (NM_001291901, intron 2 of 9) -36737 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 997-11 chr2 95744488 95744789 + 4 NA Intergenic L1MC1|LINE|L1 82343 NR_103734 150759 Hs.503463 NR_103734 LINC00342 NCRNA00342 long intergenic non-protein coding RNA 342 ncRNA 398-261 chr5 13628072 13628310 + 4 NA Intergenic Intergenic 316289 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 662-45 chr2 95210165 95210490 + 4 NA Intergenic Intergenic 44518 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 630-93 chr3 170813276 170813547 + 4 NA Intergenic Intergenic 56784 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 773-31 chr4 63920157 63920542 + 4 NA Intergenic L1MA3|LINE|L1 489101 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 636-72 chr2 65443639 65443937 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -11189 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 454-271 chr6 49049457 49049587 + 4 NA Intergenic Intergenic 413731 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 737-64 chr5 32902709 32903063 + 4 NA Intergenic L2a|LINE|L2 -44557 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 526-254 chr8 137210108 137210349 + 4 NA Intergenic MSTD|LTR|ERVL-MaLR 203360 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 729-7 chr10 8358138 8358403 + 4 NA Intergenic Intergenic -89965 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 667-40 chr18 5278331 5278564 + 4 NA Intergenic HAL1|LINE|L1 17279 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 404-148 chr19 36899524 36899674 + 4 NA intron (NM_001037232, intron 5 of 5) L1MA4A|LINE|L1 16440 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 974-9 chr2 236290390 236290745 + 4 NA Intergenic Intergenic -26222 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 904-43 chr8 132737045 132737464 + 4 NA intron (NM_144649, intron 5 of 9) L1MB7|LINE|L1 23328 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 776-61 chrX 55333840 55334167 + 4 NA Intergenic Intergenic 53915 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 664-30 chr12 21056080 21056279 + 4 NA intron (NM_001009562, intron 10 of 12) L4_C_Mam|LINE|RTE-X 40483 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 937-26 chr4 151925081 151925651 + 4 NA Intergenic MLT1N2|LTR|ERVL-MaLR -164343 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 438-59 chr11 112073914 112074087 + 4 NA promoter-TSS (NM_001082969) promoter-TSS (NM_001082969) 171 NM_138789 120379 Hs.420662 NM_138789 ENSG00000150773 PIH1D2 - PIH1 domain containing 2 protein-coding 458-46 chr12 2484155 2484322 + 4 NA intron (NM_199460, intron 5 of 49).2 L2b|LINE|L2 187982 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 628-137 chr8 141635776 141636026 + 4 NA Intergenic MER20|DNA|hAT-Charlie -128671 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 814-26 chr17 74144611 74145007 + 4 NA Intergenic L1ME2|LINE|L1 -58869 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 632-5 chr1 110279492 110279741 + 4 NA Intergenic Intergenic 59555 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 395-196 chr20 35363386 35363496 + 4 NA intron (NM_001184977, intron 4 of 7) intron (NM_001184977, intron 4 of 7) 48532 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 411-23 chr10 19364487 19364709 + 4 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 315797 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 1036-23 chr6 86092262 86092624 + 4 NA Intergenic L1PB1|LINE|L1 -413710 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 514-157 chr2 160202114 160202336 + 4 NA Intergenic L2a|LINE|L2 -1912 NM_001282354 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 968-21 chr5 24993145 24993588 + 4 NA Intergenic L1PA15|LINE|L1 -152783 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 724-12 chr12 112811250 112811564 + 4 NA intron (NM_001347955, intron 2 of 20) Tigger17a|DNA|TcMar-Tigger 19659 NM_001347955 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 642-53 chr2 40646772 40646972 + 4 NA Intergenic Intergenic -134437 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 518-10 chr1 182335085 182335272 + 4 NA Intergenic AluJb|SINE|Alu -21117 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 678-57 chr2 128707811 128708110 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR -156640 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 1399 chr1 237129687 237130338 + 4 NA intron (NM_001035, intron 1 of 104) L1MA9|LINE|L1 87828 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 956-12 chr17 5892488 5892848 + 4 NA intron (NR_040000, intron 3 of 3) intron (NR_040000, intron 3 of 3) 120434 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 576-26 chr11 110666392 110666630 + 4 NA intron (NM_020809, intron 3 of 15) L1M5|LINE|L1 45314 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 785-35 chr3 81180158 81180557 + 4 NA Intergenic Intergenic 186489 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 809-20 chr19 44321451 44321836 + 4 NA Intergenic L1MA4|LINE|L1 -16618 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 594-44 chr14 61873955 61874198 + 4 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) -53619 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 429-305 chr8 116532225 116532412 + 4 NA Intergenic Intergenic -119782 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 973-18 chr20 42703882 42704239 + 4 NA intron (NM_133170, intron 6 of 31) MER90a|LTR|ERV1 18577 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 753-54 chr7 85933109 85933451 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR 512158 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 736-60 chr3 187851826 187852153 + 4 NA Intergenic Intergenic -106521 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 1452-4 chr12 2502835 2503470 + 4 NA intron (NM_199460, intron 7 of 49).2 MER5A|DNA|hAT-Charlie 169068 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 1500-4 chr14 64451445 64451920 + 4 NA intron (NM_001304508, intron 2 of 2) intron (NM_001304508, intron 2 of 2) -13817 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 650-72 chr21 30547794 30547968 + 4 NA Intergenic L1PA15|LINE|L1 -6017 NM_181612 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 594-153 chr8 129632881 129633224 + 4 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 47187 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 770-8 chr11 79002979 79003220 + 4 NA intron (NM_001098816, intron 6 of 33) L1PA13|LINE|L1 399010 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 843 chr1 233770497 233770982 + 4 NA Intergenic MSTD|LTR|ERVL-MaLR -133937 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 355-137 chr12 129618354 129618527 + 4 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 285585 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 534-193 chr5 23428591 23428756 + 4 NA Intergenic Intergenic -78936 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 1088-8 chr4 27653663 27654129 + 4 NA Intergenic Intergenic 436417 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 675-62 chr4 13715126 13715361 + 4 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 60064 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 1316-3 chr8 46462401 46463092 + 4 NA Intergenic ALR/Alpha|Satellite|centr 154897 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 394-189 chr2 176789397 176789541 + 4 NA Intergenic Intergenic 151715 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 1011-10 chr19 9445249 9445594 + 4 NA Intergenic L1MB8|LINE|L1 -9843 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 504-156 chr21 29184793 29185004 + 4 NA Intergenic Intergenic -8596 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 619-139 chr9 118048825 118049014 + 4 NA Intergenic L1MC3|LINE|L1 344516 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 468-12 chr1 166486103 166486287 + 4 NA intron (NR_146890, intron 1 of 2) L2c|LINE|L2 3844 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 520-297 chr8 96625126 96625289 + 4 NA Intergenic Intergenic -20035 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 869-30 chr2 75425699 75426109 + 4 NA Intergenic Intergenic -98164 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 583-78 chr19 36517217 36517525 + 4 NA 5' UTR (NM_001166036, exon 3 of 4) 5' UTR (NM_001166036, exon 3 of 4) 10900 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 1283-2 chr22 48388622 48389203 + 4 NA Intergenic AluSz|SINE|Alu -100641 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 674-76 chr5 35634164 35634439 + 4 NA intron (NM_144722, intron 2 of 9) L1M4|LINE|L1 16438 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 600-106 chr5 161164027 161164286 + 4 NA Intergenic L2a|LINE|L2 -225530 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 1506 chr14 45354782 45355459 + 4 NA Intergenic Intergenic -101918 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 973-11 chr2 16354389 16354702 + 4 NA Intergenic L1ME3F|LINE|L1 304118 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 523-196 chr4 31494491 31494796 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -11901 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 478-19 chr1 232202291 232202465 + 4 NA Intergenic L1MD2|LINE|L1 276544 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 968-23 chr5 118196293 118196592 + 4 NA intron (NR_104997, intron 2 of 2) L2a|LINE|L2 -86132 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 1255-10 chr5 45948602 45949366 + 4 NA Intergenic ALR/Alpha|Satellite|centr -252604 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 620-83 chr3 5737219 5737398 + 4 NA Intergenic Intergenic -487053 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 836-13 chr10 55204084 55204355 + 4 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -394823 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 847-21 chr16 76196999 76197283 + 4 NA Intergenic Intergenic -80260 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 1525 chr2 31452998 31453642 + 4 NA Intergenic L1M1|LINE|L1 -38578 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 758-29 chr15 80474526 80474816 + 4 NA intron (NM_014862, intron 4 of 18) intron (NM_014862, intron 4 of 18) 70289 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 771-8 chr1 248718678 248718980 + 4 NA Intergenic AluJr|SINE|Alu 21767 NR_125950 101928226 NR_125950 LYPD9P - LY6/PLAUR domain containing 9, pseudogene pseudo 531-72 chr15 69824340 69824623 + 4 NA Intergenic Intergenic -10753 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 762-6 chr10 31639626 31639926 + 4 NA Intergenic L1P1|LINE|L1 -240021 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 716-71 chr5 166506023 166506239 + 4 NA Intergenic L1ME3A|LINE|L1 420239 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 557-38 chr11 115855919 115856114 + 4 NA Intergenic L1ME3|LINE|L1 -95816 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 923-12 chr2 56840975 56841399 + 4 NA Intergenic L1MC3|LINE|L1 -655417 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 929-12 chr15 93412721 93413099 + 4 NA Intergenic MIR3|SINE|MIR 206844 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 576-49 chr14 71822622 71822859 + 4 NA Intergenic L1M7|LINE|L1 -109431 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 880-10 chr12 113120865 113121311 + 4 NA intron (NM_004658, intron 6 of 21) MLT1K|LTR|ERVL-MaLR 14511 NM_001301202 8437 Hs.528693 NM_004658 ENSG00000111344 RASAL1 RASAL RAS protein activator like 1 protein-coding 638-108 chr4 138531721 138531983 + 4 NA Intergenic L1ME3G|LINE|L1 222141 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 760-41 chr20 38688711 38688993 + 4 NA Intergenic Intergenic -35634 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 658 chr1 13845218 13845395 + 4 NA Intergenic L1MD1|LINE|L1 95891 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 682-86 chr6 40487970 40488307 + 4 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 99226 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 855-24 chr2 62264841 62265164 + 4 NA Intergenic U13_|snRNA|snRNA 49481 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 444-60 chr13 46361828 46362009 + 4 NA intron (NM_025113, intron 7 of 14) MIRc|SINE|MIR 25334 NM_001286764 80183 Hs.98117 NM_025113 ENSG00000102445 RUBCNL C13orf18|KIAA0226L|PACER rubicon like autophagy enhancer protein-coding 654-19 chr10 64377101 64377394 + 4 NA Intergenic Intergenic -448281 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 382-222 chr2 152584947 152585101 + 4 NA intron (NM_052905, intron 9 of 25) intron (NM_052905, intron 9 of 25) 132437 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 853-45 chr8 132385840 132386131 + 4 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 61277 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 424-93 chr16 64518009 64518224 + 4 NA Intergenic Intergenic 603947 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 655-92 chr4 100282449 100282635 + 4 NA Intergenic Intergenic -92074 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 610-83 chr2 54236909 54237123 + 4 NA intron (NM_138448, intron 3 of 3) MER2|DNA|TcMar-Tigger 19213 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 687-123 chr8 134177611 134177840 + 4 NA Intergenic LTR16B1|LTR|ERVL 291229 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1345-4 chr22 34887896 34888541 + 4 NA intron (NR_138042, intron 3 of 4) L2b|LINE|L2 109698 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1895 chr8 100586351 100587122 + 4 NA intron (NM_152628, intron 11 of 13) intron (NM_152628, intron 11 of 13) -26977 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 1177-11 chr9 103605500 103606086 + 4 NA Intergenic L1MA8|LINE|L1 -280760 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 372-436 chr6 88859563 88859725 + 4 NA intron (NM_001286428, intron 7 of 13) intron (NM_001286428, intron 7 of 13) 103974 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 637-113 chr7 127260183 127260383 + 4 NA Intergenic Intergenic -7342 NM_001371083 775-21 chr12 20886301 20886548 + 4 NA intron (NM_019844, intron 13 of 15) L2a|LINE|L2 63876 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 626-48 chr17 62152025 62152239 + 4 NA Intergenic AluSx|SINE|Alu -86854 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 450-229 chr4 158362261 158362424 + 4 NA Intergenic FLAM_C|SINE|Alu 151856 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 634-5 chr1 147219374 147219682 + 4 NA intron (NM_001461, intron 2 of 8) L1MC|LINE|L1 5811 NM_001461 2330 Hs.642706 NM_001461 ENSG00000131781 FMO5 - flavin containing dimethylaniline monoxygenase 5 protein-coding 835-23 chr18 1117320 1117775 + 4 NA Intergenic L1PBa|LINE|L1 -189554 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 686-70 chr6 54403686 54403890 + 4 NA Intergenic Intergenic 95347 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 393-40 chr10 83885645 83885810 + 4 NA Intergenic L1MEd|LINE|L1 -208638 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 770-23 chr16 20508077 20508385 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR 56710 NM_001308172 123876 Hs.298252 NM_001010845 ENSG00000183747 ACSM2A A-923A4.1|ACSM2 acyl-CoA synthetase medium chain family member 2A protein-coding 706-75 chr8 135123136 135123419 + 4 NA Intergenic Intergenic -110854 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 795-45 chr6 23900847 23901215 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger -225184 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 391-82 chr12 118902280 118902453 + 4 NA Intergenic Intergenic -68830 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 728-8 chr1 225037272 225037522 + 4 NA intron (NM_001367479, intron 11 of 85) L1PA14|LINE|L1 107722 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 1409 chr14 69513769 69514286 + 4 NA intron (NM_001161498, intron 6 of 12) L1MC1|LINE|L1 29299 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 335-12 chr1 80689123 80689234 + 4 NA Intergenic Intergenic 47891 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 1140-4 chr12 20998280 20998653 + 4 NA intron (NM_001371097, intron 13 of 15) AluSx1|SINE|Alu -17230 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 863-32 chr4 44382086 44382383 + 4 NA intron (NM_198353, intron 1 of 1) L1MA5|LINE|L1 66575 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 687-2 chr1 17154070 17154452 + 4 NA Intergenic LTR56|LTR|ERV1 -34810 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 670-124 chr8 117640569 117640971 + 4 NA Intergenic L1ME3D|LINE|L1 120057 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 1163-9 chr3 42733140 42733708 + 4 NA intron (NM_144719, intron 11 of 15) intron (NM_144719, intron 11 of 15) 849 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 1036-16 chr21 15330487 15330977 + 4 NA Intergenic L1M4|LINE|L1 -265732 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 1260-6 chr8 114020792 114021338 + 4 NA Intergenic Intergenic -584126 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 1167-11 chr2 100545144 100545761 + 4 NA Intergenic Intergenic -17541 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 715-61 chr4 70307259 70307551 + 4 NA Intergenic L2|LINE|L2 -27576 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 1075-18 chrX 65358737 65359172 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -129781 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 807-23 chr19 33732600 33732953 + 4 NA intron (NM_001127895, intron 3 of 4) intron (NM_001127895, intron 3 of 4) 48248 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 703-2 chr1 68083403 68083667 + 4 NA intron (NR_040077, intron 3 of 9) intron (NR_040077, intron 3 of 9) -31904 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 771-55 chr3 89827683 89828108 + 4 NA Intergenic L5|LINE|RTE-X 720274 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 732-53 chr20 58304660 58304955 + 4 NA intron (NR_003505, intron 2 of 16) L1MC5a|LINE|L1 4632 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 760-19 chr15 25068899 25069235 + 4 NA intron (NR_146177, intron 31 of 147) intron (NR_146177, intron 31 of 147) 1280 NR_003320 100033417 NR_003320 ENSG00000207191 SNORD116-5 HBII-85-5 small nucleolar RNA, C/D box 116-5 snoRNA 548-138 chr21 30037413 30037686 + 4 NA Intergenic Intergenic -97497 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 1094-7 chr20 40627279 40627787 + 4 NA Intergenic Intergenic 61703 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 782-20 chr14 64518285 64518580 + 4 NA non-coding (NR_110550, exon 3 of 4) non-coding (NR_110550, exon 3 of 4) -13219 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 603-111 chr3 114010017 114010261 + 4 NA intron (NR_148531, intron 7 of 14) intron (NR_148531, intron 7 of 14) 46387 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 722-50 chr22 36737432 36737654 + 4 NA intron (NR_134623, intron 2 of 3) intron (NR_134623, intron 2 of 3) 33667 NR_134623 105373021 Hs.401697 NR_134623 LOC105373021 - uncharacterized LOC105373021 ncRNA 998-6 chr10 68252712 68253121 + 4 NA Intergenic Intergenic -20803 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 450-194 chr3 70303657 70303842 + 4 NA intron (NM_001364676, intron 2 of 4) AluSz|SINE|Alu 8889 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 1227 chr10 81511239 81511755 + 4 NA Intergenic L1M5|LINE|L1 -363697 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 699-75 chr4 91414376 91414654 + 4 NA intron (NM_001145065, intron 10 of 10) L1MA9|LINE|L1 862787 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 1490-3 chr16 79180605 79181410 + 4 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 419730 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 558-147 chr3 192604796 192605068 + 4 NA intron (NM_004113, intron 2 of 5) L1PA16|LINE|L1 89910 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 993-18 chr5 46308744 46309120 + 4 NA Intergenic ALR/Alpha|Satellite|centr -612552 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 933 chr1 68779696 68780203 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR -275949 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 427-215 chr5 129230295 129230501 + 4 NA Intergenic L1MCa|LINE|L1 132710 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 641-110 chr8 90331848 90332177 + 4 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 110524 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 472-127 chr18 370173 370361 + 4 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -102220 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 812-3 chr1 83600587 83600790 + 4 NA intron (NR_119375, intron 2 of 2) L1MA9|LINE|L1 154634 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 684-82 chr4 33263921 33264202 + 4 NA Intergenic Intergenic 775832 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 500-50 chr11 46667634 46667843 + 4 NA intron (NR_144424, intron 13 of 16) intron (NR_144424, intron 13 of 16) 32881 NM_004308 392 Hs.138860 NM_004308 ENSG00000175220 ARHGAP1 CDC42GAP|RHOGAP|RHOGAP1|p50rhoGAP Rho GTPase activating protein 1 protein-coding 1404-3 chr14 87170550 87171172 + 4 NA Intergenic L2a|LINE|L2 265083 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 1036-6 chr11 54866155 54866625 + 4 NA Intergenic ALR/Alpha|Satellite|centr 159558 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 1114 chr12 48276299 48276880 + 4 NA Intergenic L1MEg|LINE|L1 -52391 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 557-87 chr2 33713356 33713541 + 4 NA intron (NR_126403, intron 1 of 5) HAL1|LINE|L1 6562 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 735-68 chr5 41386305 41386607 + 4 NA intron (NM_001005473, intron 1 of 2) MLT1E|LTR|ERVL-MaLR 124145 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 1821-3 chr5 46266140 46267143 + 4 NA Intergenic ALR/Alpha|Satellite|centr -570261 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 617-110 chr5 101587059 101587273 + 4 NA Intergenic L1PA4|LINE|L1 -683884 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 753-59 chr8 132692507 132692819 + 4 NA Intergenic Intergenic -17118 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 662-86 chr6 122213210 122213548 + 4 NA Intergenic Intergenic -186172 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 981-24 chr5 65205525 65205904 + 4 NA intron (NR_135689, intron 21 of 25) intron (NR_135689, intron 21 of 25) 276206 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 576-43 chr14 25467761 25467928 + 4 NA Intergenic MER57E1|LTR|ERV1 -417547 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 552-223 chr9 77890849 77891078 + 4 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) 140848 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 644-36 chr19 37213092 37213370 + 4 NA Intergenic MER21C|LTR|ERVL -2695 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 794-44 chr8 109959101 109959432 + 4 NA Intergenic LTR16B|LTR|ERVL 16505 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 603-68 chr18 296111 296282 + 4 NA Intergenic Intergenic -28149 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 976-2 chr1 181285011 181285353 + 4 NA Intergenic L1MEc|LINE|L1 48794 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 752-3 chr1 81122977 81123215 + 4 NA Intergenic Intergenic -183096 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 833-12 chr18 38553499 38553728 + 4 NA Intergenic Intergenic 896478 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 670-91 chr5 3080231 3080507 + 4 NA Intergenic Intergenic -97466 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 1285 chr10 37325910 37326683 + 4 NA intron (NR_104061, intron 3 of 4) intron (NR_104061, intron 3 of 4) 17110 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 592-104 chr3 2126851 2127055 + 4 NA intron (NR_046555, intron 2 of 2) intron (NR_046555, intron 2 of 2) 17288 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 766-2 chr1 208730044 208730264 + 4 NA intron (NR_146914, intron 3 of 3) intron (NR_146914, intron 3 of 3) 1466 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 600-135 chr8 133119107 133119351 + 4 NA intron (NM_003235, intron 45 of 47) intron (NM_003235, intron 45 of 47) -16627 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 977-6 chr16 78356093 78356580 + 4 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 256682 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 836-4 chr1 113463343 113463753 + 4 NA intron (NM_001142782, intron 1 of 20) L2a|LINE|L2 73033 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 667-99 chr6 105143287 105143536 + 4 NA intron (NR_037157, intron 1 of 3) L1MA9|LINE|L1 5724 NR_037157 154442 Hs.586271 NR_037157 ENSG00000203808 BVES-AS1 C6orf112|bA99L11.2 BVES antisense RNA 1 ncRNA 526-155 chr21 18583503 18583714 + 4 NA intron (NR_109925, intron 3 of 3) intron (NR_109925, intron 3 of 3) 102556 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 601-137 chr7 34784005 34784189 + 4 NA intron (NM_207172, intron 3 of 8) L1P1|LINE|L1 -25825 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 870-37 chr8 122749073 122749305 + 4 NA Intergenic L2c|LINE|L2 -32466 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 833-37 chr7 51997736 51998084 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -604654 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 1388 chr10 90135661 90136468 + 4 NA Intergenic LTR9B|LTR|ERV1 -178691 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 334-29 chr1 167749688 167749789 + 4 NA intron (NM_024569, intron 1 of 4) MIR3|SINE|MIR 27756 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 276-449 chr8 77933050 77933191 + 4 NA Intergenic Intergenic 482423 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 667-49 chr2 48158153 48158476 + 4 NA Intergenic L1MA4|LINE|L1 -156368 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 633-122 chr8 118543661 118543884 + 4 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -77229 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 491-208 chr5 46148601 46148851 + 4 NA Intergenic ALR/Alpha|Satellite|centr -452346 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 529-12 chr10 31451816 31452014 + 4 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -52160 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 1606 chr2 144749221 144750032 + 4 NA intron (NR_033870, intron 1 of 4) L1ME1|LINE|L1 81659 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 646-121 chr7 93173823 93174017 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -25535 NM_152703 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 997-16 chr20 12299928 12300303 + 4 NA Intergenic Intergenic 382222 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 515-84 chr16 68560094 68560342 + 4 NA intron (NM_001305204, intron 4 of 4) L1MB7|LINE|L1 20927 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 1136-4 chr14 72819830 72820239 + 4 NA intron (NM_001280542, intron 1 of 10) L1ME2|LINE|L1 72615 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 385-161 chr2 7765558 7765689 + 4 NA Intergenic Intergenic 134032 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 1048-13 chr2 36624376 36624939 + 4 NA Intergenic L1M5|LINE|L1 -26489 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 1386-4 chr2 30668773 30669575 + 4 NA Intergenic L1MCc|LINE|L1 138272 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 672-70 chr3 25494478 25494765 + 4 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 36311 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 939-30 chr8 50219894 50220362 + 4 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 55997 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 462-92 chr15 70421377 70421560 + 4 NA Intergenic Intergenic 84460 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 604-152 chr7 55733218 55733378 + 4 NA Intergenic Intergenic -28731 NR_003949 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 693-57 chr2 77457443 77457711 + 4 NA intron (NR_146416, intron 1 of 1) L2b|LINE|L2 64799 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 611-39 chr14 71928778 71928958 + 4 NA Intergenic Intergenic -3303 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 552-87 chr18 6124223 6124426 + 4 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -132420 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 512-182 chr4 18931917 18932197 + 4 NA Intergenic Intergenic -910182 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 784-61 chr8 70702175 70702433 + 4 NA intron (NM_001287258, intron 4 of 5) L1M4a2|LINE|L1 32965 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 695-111 chrX 142626810 142627167 + 4 NA Intergenic Intergenic -398940 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 1034-9 chr15 91674948 91675449 + 4 NA Intergenic L1MEc|LINE|L1 -178510 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 810-46 chr5 124392207 124392602 + 4 NA intron (NR_125774, intron 3 of 5) L1MB3|LINE|L1 46116 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 802-61 chr6 69544377 69544617 + 4 NA Intergenic AluJr|SINE|Alu 251969 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 899-10 chr15 49697475 49697753 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 76566 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 719-3 chr1 88216977 88217282 + 4 NA Intergenic Intergenic -467015 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 899-8 chr14 53703884 53704352 + 4 NA Intergenic Intergenic 244366 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 1500 chr1 241197053 241197753 + 4 NA intron (NM_001282778, intron 2 of 16) AluYa5|SINE|Alu 65131 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 890-24 chr3 96233330 96233821 + 4 NA Intergenic Intergenic -126389 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 1032-23 chr8 103635501 103636064 + 4 NA intron (NM_001348497, intron 1 of 22) L1PREC2|LINE|L1 -133872 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 940-39 chr8 122259152 122259854 + 4 NA Intergenic Intergenic 309141 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 753-31 chr2 11889097 11889416 + 4 NA Intergenic L1M6|LINE|L1 -52270 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 644-40 chr2 51945585 51945903 + 4 NA intron (NR_135237, intron 7 of 10) L1MA8|LINE|L1 -424904 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 1011-20 chr9 27884131 27884739 + 4 NA Intergenic L1MEf|LINE|L1 -310569 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 532-110 chr19 58128856 58129075 + 4 NA exon (NM_024620, exon 4 of 4) exon (NM_024620, exon 4 of 4) -10539 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 883-31 chr4 100701112 100701446 + 4 NA Intergenic LTR104_Mam|LTR|Gypsy -26166 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 413-147 chr2 124765970 124766207 + 4 NA intron (NM_130773, intron 16 of 23) Zaphod3|DNA|hAT-Tip100 740801 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 633-133 chrX 79065025 79065250 + 4 NA Intergenic L1M1|LINE|L1 -105835 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 536-183 chr5 25356364 25356639 + 4 NA Intergenic Intergenic 165548 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 514-131 chr18 71958207 71958387 + 4 NA Intergenic Intergenic -176071 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 733-34 chr2 57857765 57858164 + 4 NA Intergenic L1PA16|LINE|L1 -49687 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 646-118 chr7 41834421 41834752 + 4 NA Intergenic Intergenic -131496 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 899-15 chr2 79187932 79188371 + 4 NA Intergenic Intergenic -28398 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 754-85 chr9 39587715 39588084 + 4 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -123373 NR_003528 401509 Hs.449445 NM_001032297 ZNF658B - zinc finger protein 658B (pseudogene) pseudo 683-67 chr5 55876895 55877160 + 4 NA intron (NM_001297572, intron 4 of 10) L1MB7|LINE|L1 23705 NM_001242639 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 2134 chr5 66521041 66522170 + 4 NA Intergenic L1MEg|LINE|L1 -10001 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 742-82 chr9 38741421 38741772 + 4 NA Intergenic Intergenic 120508 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 629-33 chr12 88936596 88936918 + 4 NA Intergenic Intergenic 82935 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 522-179 chr3 98259690 98259878 + 4 NA Intergenic L1MA2|LINE|L1 -4460 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 1080-25 chr8 113877649 113878064 + 4 NA Intergenic Intergenic -440917 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 826-2 chr1 68247961 68248284 + 4 NA Intergenic Intergenic -15576 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 1143-6 chr17 6888695 6889213 + 4 NA intron (NR_002710, intron 2 of 13) L1MA3|LINE|L1 -4823 NR_120453 245 Hs.378695 NR_002710 ENSG00000262943 ALOX12P2 ALOX12E arachidonate 12-lipoxygenase pseudogene 2 pseudo 1263-3 chr18 75589613 75590448 + 4 NA Intergenic Intergenic 122373 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 651-39 chr14 69305842 69306087 + 4 NA intron (NM_020692, intron 1 of 15) L1MB1|LINE|L1 45806 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 653-55 chr18 10507813 10508097 + 4 NA Intergenic L1MB5|LINE|L1 -18072 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 595-69 chr17 68659147 68659401 + 4 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 31120 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 863 chr1 14842499 14842904 + 4 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -81428 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 750-46 chr3 24100404 24100707 + 4 NA non-coding (NR_026834, exon 2 of 2) non-coding (NR_026834, exon 2 of 2) 2692 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 1125-12 chr3 123826782 123827424 + 4 NA intron (NM_001321309, intron 3 of 32) L1MA5A|LINE|L1 57229 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 612-123 chr6 116780421 116780592 + 4 NA Intergenic Intergenic -14787 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 822-25 chr19 38767268 38767617 + 4 NA Intergenic L1ME2|LINE|L1 6075 NM_002307 3963 Hs.702546 NM_002307 ENSG00000205076 LGALS7 GAL7|LGALS7A galectin 7 protein-coding 648-95 chr3 122604010 122604214 + 4 NA intron (NM_001113523, intron 1 of 11) intron (NM_001113523, intron 1 of 11) -11503 NM_001308321 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 769-37 chr22 34627400 34627640 + 4 NA Intergenic Intergenic 370396 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 806-29 chr2 17721248 17721461 + 4 NA intron (NM_024624, intron 8 of 26) intron (NM_024624, intron 8 of 26) 32456 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 635-41 chr17 77813995 77814202 + 4 NA Intergenic MLT1H2|LTR|ERVL-MaLR 69989 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 1430-3 chr7 87766894 87767765 + 4 NA intron (NM_138290, intron 7 of 11) L1PA17|LINE|L1 -54006 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 377-385 chr8 6482724 6482899 + 4 NA intron (NM_024596, intron 11 of 13) intron (NM_024596, intron 11 of 13) 75658 NM_001322045 79648 Hs.593807 NM_024596 ENSG00000147316 MCPH1 BRIT1|MCT microcephalin 1 protein-coding 300-397 chr6 90264335 90264436 + 4 NA intron (NM_021813, intron 2 of 8) L1MC4|LINE|L1 32458 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 746-30 chr17 21120514 21120834 + 4 NA Intergenic L1MDa|LINE|L1 -6254 NM_015510 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 671-48 chr2 123003295 123003583 + 4 NA Intergenic Intergenic 70042 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 562-127 chr20 40203953 40204103 + 4 NA Intergenic Intergenic 199567 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 639-46 chr15 97102775 97103026 + 4 NA Intergenic Intergenic 319465 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 995-2 chr10 43632916 43633352 + 4 NA intron (NR_038867, intron 1 of 4) L1MDa|LINE|L1 4317 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 451-129 chr20 31680143 31680350 + 4 NA intron (NR_134257, intron 1 of 2) intron (NR_134257, intron 1 of 2) -41261 NR_131907 103021294 NR_131907 ENSG00000281376 ABALON INXS apoptotic BCL2L1-antisense long non-coding RNA ncRNA 1044-12 chr2 29089113 29089517 + 4 NA Intergenic L1MA7|LINE|L1 -8361 NM_001287528 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 682-104 chr8 120385118 120385445 + 4 NA Intergenic L1M3|LINE|L1 59869 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 550-48 chr11 104561655 104561870 + 4 NA Intergenic Intergenic 47540 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 941-11 chr19 9527546 9527956 + 4 NA 3' UTR (NM_024106, exon 8 of 8) 3' UTR (NM_024106, exon 8 of 8) 10894 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 630-61 chr2 145415071 145415292 + 4 NA Intergenic Intergenic 747214 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 863-16 chr19 52124237 52124678 + 4 NA intron (NM_178523, intron 2 of 3) MIR|SINE|MIR 15481 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 748-70 chr5 40303477 40303825 + 4 NA Intergenic LTR16E2|LTR|ERVL 251360 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 826-9 chr10 61646174 61646574 + 4 NA Intergenic L1ME4a|LINE|L1 -16555 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 576-166 chr8 83387710 83387870 + 4 NA Intergenic L1MA8|LINE|L1 -15968 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 891-7 chr12 58517822 58518156 + 4 NA Intergenic Intergenic -73713 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 736-64 chr4 58579470 58579867 + 4 NA Intergenic L1PA7|LINE|L1 -43340 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 655-133 chr8 132290061 132290357 + 4 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 157053 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 1455-5 chr2 207890665 207891317 + 4 NA intron (NM_001080475, intron 6 of 7) intron (NM_001080475, intron 6 of 7) -121085 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 968-10 chr2 113688514 113688832 + 4 NA Intergenic L1M4a1|LINE|L1 32695 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 541 chr1 25447696 25447956 + 4 NA intron (NM_018202, intron 2 of 10) intron (NM_018202, intron 2 of 10) 16929 NM_018202 55219 Hs.189782 NM_018202 ENSG00000204178 MACO1 MACOILIN|TMEM57 macoilin 1 protein-coding 667-21 chr11 30030790 30031179 + 4 NA Intergenic Intergenic -13954 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 675-53 chr22 33857484 33857800 + 4 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 62786 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 591-34 chr13 65765690 65765969 + 4 NA Intergenic Intergenic -100218 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 769-65 chr8 84569266 84569491 + 4 NA intron (NM_001354308, intron 3 of 9) L1PA4|LINE|L1 -136549 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 992-21 chr7 95086188 95086559 + 4 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 176475 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 728-76 chr5 124327900 124328136 + 4 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 110502 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 521-260 chr8 133167411 133167614 + 4 NA Intergenic Intergenic -23527 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 854-41 chr8 108816200 108816549 + 4 NA Intergenic L1PBa|LINE|L1 -28780 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 860-28 chr2 117055174 117055465 + 4 NA Intergenic Intergenic -759372 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 1183-3 chr2 20409661 20410335 + 4 NA Intergenic L1M2a|LINE|L1 -37076 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 537-243 chr8 28207400 28207743 + 4 NA Intergenic Intergenic -109697 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 760-26 chr19 36546502 36546852 + 4 NA 3' UTR (NM_001321351, exon 6 of 6) 3' UTR (NM_001321351, exon 6 of 6) -18406 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 883-3 chr11 23841839 23842178 + 4 NA Intergenic L1MA3|LINE|L1 -422818 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 728-107 chr9 10805165 10805477 + 4 NA Intergenic Intergenic 192115 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 863-17 chr19 53354349 53354577 + 4 NA 3' UTR (NM_138374, exon 4 of 4) 3' UTR (NM_138374, exon 4 of 4) -11242 NR_145445 170958 Hs.352638 NM_001348156 ENSG00000203326 ZNF525 - zinc finger protein 525 protein-coding 246-430 chr9 32097833 32097947 + 4 NA Intergenic Intergenic -286713 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 1002-23 chr7 136827050 136827386 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -41434 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 939-5 chr1 171153932 171154380 + 4 NA non-coding (NR_002601, exon 6 of 7) non-coding (NR_002601, exon 6 of 7) 16416 NR_002601 388714 Hs.448988 NR_002601 ENSG00000117507 FMO6P FMO6 flavin containing dimethylaniline monoxygenase 6, pseudogene pseudo 679-49 chr18 79897331 79897616 + 4 NA intron (NM_012283, intron 1 of 1) L1M4b|LINE|L1 33805 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 730-21 chr18 20561863 20562099 + 4 NA Intergenic ALR/Alpha|Satellite|centr 549832 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 714-31 chr18 78364420 78364667 + 4 NA Intergenic Intergenic -370816 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 726-77 chr8 81208043 81208390 + 4 NA Intergenic Intergenic -72320 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 286-61 chr11 14652978 14653114 + 4 NA intron (NM_000922, intron 1 of 15) L1M3|LINE|L1 9242 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 1148-4 chr2 120409115 120409644 + 4 NA Intergenic MER58C|DNA|hAT-Charlie 56970 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 700-73 chr4 106464733 106465078 + 4 NA Intergenic L1ME1|LINE|L1 31281 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 808-32 chr2 224155718 224156077 + 4 NA Intergenic Intergenic -116578 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 1120-5 chr18 70354884 70355477 + 4 NA Intergenic Intergenic -17000 NR_146458 102724895 NR_146458 LIVAR lnc18q22.2 liver cell viability associated lncRNA ncRNA 680-56 chr2 84772679 84772885 + 4 NA intron (NM_001370, intron 64 of 76) L1M4|LINE|L1 108302 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 574-52 chr17 34081502 34081867 + 4 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 75122 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 969-12 chr15 95336175 95336543 + 4 NA Intergenic Intergenic -9259 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 892-27 chr3 6481826 6482429 + 4 NA Intergenic MSTC|LTR|ERVL-MaLR 323322 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 537-160 chr3 146331322 146331474 + 4 NA Intergenic Intergenic -80219 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 736-39 chr2 132735816 132736088 + 4 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -64426 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 490-191 chr4 5490341 5490645 + 4 NA intron (NM_001306082, intron 12 of 12) intron (NM_001306082, intron 12 of 12) -34076 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 948-19 chr2 13972635 13973181 + 4 NA Intergenic Intergenic 428050 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 704-76 chr7 43352884 43353160 + 4 NA intron (NM_001287059, intron 4 of 27) intron (NM_001287059, intron 4 of 27) 169520 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 387-163 chr2 34130921 34131099 + 4 NA intron (NR_126403, intron 4 of 5) ERV24_Prim-int|LTR|ERV1 63784 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 744-65 chr7 42661961 42662250 + 4 NA non-coding (NR_110833, exon 3 of 3) non-coding (NR_110833, exon 3 of 3) 44342 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 1780 chr16 80054712 80055725 + 4 NA Intergenic L1MA9|LINE|L1 259969 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 493-129 chr19 36951133 36951357 + 4 NA 3' UTR (NM_001204837, exon 5 of 5) 3' UTR (NM_001204837, exon 5 of 5) 34913 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 294-195 chr2 14254878 14255019 + 4 NA intron (NR_103814, intron 2 of 3) MER52A|LTR|ERV1 146010 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 937-19 chr3 97309221 97309562 + 4 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -130216 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 626-43 chr16 75016861 75017067 + 4 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 17940 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 396-220 chr3 68188221 68188349 + 4 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 184038 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 536-161 chr3 41414464 41414662 + 4 NA intron (NR_136342, intron 32 of 34) intron (NR_136342, intron 32 of 34) 215058 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 908-7 chr14 70104648 70104978 + 4 NA intron (NM_033262, intron 2 of 7) L1MEf|LINE|L1 -24596 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 776-9 chr11 28825167 28825413 + 4 NA Intergenic Intergenic -347742 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 613-112 chr5 152242612 152242970 + 4 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 162488 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 612-26 chr11 48650338 48650552 + 4 NA Intergenic ALR/Alpha|Satellite|centr 161652 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 510-237 chr5 170210540 170210721 + 4 NA Intergenic L1MC5|LINE|L1 -11489 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 313-297 chr2 228885186 228885307 + 4 NA Intergenic L1M4|LINE|L1 -273851 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 1001-4 chr10 41768358 41768825 + 4 NA Intergenic ALR/Alpha|Satellite|centr 599454 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 790-26 chr2 125273906 125274350 + 4 NA Intergenic MIR|SINE|MIR 843857 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 949-15 chr5 34986326 34986704 + 4 NA Intergenic Intergenic 56922 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 860-12 chr14 44903564 44903937 + 4 NA intron (NM_001017923, intron 3 of 4) intron (NM_001017923, intron 3 of 4) 6475 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 696-16 chr10 103957791 103957989 + 4 NA Intergenic MLT1G1|LTR|ERVL-MaLR -9250 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 953-7 chr14 43000835 43001223 + 4 NA Intergenic Intergenic 1394173 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 848-19 chr18 77827590 77828003 + 4 NA Intergenic MLT1G1|LTR|ERVL-MaLR 165931 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 410-336 chr9 117085725 117085873 + 4 NA intron (NM_014010, intron 4 of 21) intron (NM_014010, intron 4 of 21) 95402 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 774-87 chr8 112402365 112402772 + 4 NA intron (NM_001363185, intron 31 of 66) intron (NM_001363185, intron 31 of 66) -240925 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 1339 chr12 37872031 37872620 + 4 NA Intergenic ALR/Alpha|Satellite|centr -444449 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 794-23 chr2 79656692 79657087 + 4 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -7530 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 1009-18 chr7 69088148 69088670 + 4 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat 509215 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 905-9 chr14 45932444 45932867 + 4 NA Intergenic L1MCb|LINE|L1 -131504 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 419-105 chr16 47786055 47786249 + 4 NA Intergenic Intergenic -72429 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 997-20 chr22 26962107 26962639 + 4 NA Intergenic LTR16C|LTR|ERVL 59081 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 680-53 chr2 59496053 59496240 + 4 NA Intergenic L1PA16|LINE|L1 278438 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 724-91 chr7 34698594 34698851 + 4 NA intron (NM_001300934, intron 2 of 6) intron (NM_001300934, intron 2 of 6) 40483 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 453-278 chr8 80390544 80390696 + 4 NA Intergenic MIRb|SINE|MIR -94973 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 391-41 chr10 61484343 61484528 + 4 NA intron (NR_120643, intron 5 of 5) MER4D0|LTR|ERV1 4394 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 720-93 chr9 24647499 24647747 + 4 NA Intergenic L1MA9|LINE|L1 -101726 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 551-45 chr12 116570804 116571018 + 4 NA intron (NM_001085481, intron 1 of 1) intron (NM_001085481, intron 1 of 1) 11530 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 790-29 chr20 41823879 41824316 + 4 NA Intergenic L1MD1|LINE|L1 -205720 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 787-10 chr14 60412848 60413102 + 4 NA Intergenic L1MB3|LINE|L1 73088 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 523-225 chr5 118073630 118073825 + 4 NA intron (NR_104997, intron 2 of 2) (TA)n|Simple_repeat|Simple_repeat -208847 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 659-37 chr16 83306351 83306700 + 4 NA intron (NM_001220489, intron 4 of 12) MSTB2|LTR|ERVL-MaLR -201821 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 682-81 chr5 87569839 87570166 + 4 NA Intergenic L2a|LINE|L2 -92040 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 1064-15 chr4 87864803 87865246 + 4 NA Intergenic Intergenic 30321 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 420-284 chr8 78969707 78969855 + 4 NA Intergenic Intergenic 132252 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 931-16 chr2 226100704 226101108 + 4 NA Intergenic MER33|DNA|hAT-Charlie -41888 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 679-2 chr1 19932626 19932870 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -9131 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 626 chr1 13669051 13669255 + 4 NA Intergenic Charlie25|DNA|hAT-Charlie -31035 NM_001135610 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 510-90 chr15 80339501 80339637 + 4 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 2236 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 868-35 chr6 149112498 149112863 + 4 NA Intergenic Intergenic -80019 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 608-26 chr11 104416145 104416455 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 193002 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 648-101 chr4 78225688 78225922 + 4 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) -63180 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 614-36 chr16 51859432 51859735 + 4 NA Intergenic Intergenic 97064 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 603-89 chr2 108947133 108947412 + 4 NA intron (NM_022336, intron 1 of 11) THE1D-int|LTR|ERVL-MaLR 41948 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 979-11 chr20 39365623 39365956 + 4 NA Intergenic CR1-3_Croc|LINE|CR1 -141041 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 454-239 chr4 90534937 90535083 + 4 NA intron (NM_207491, intron 5 of 7) MER5A1|DNA|hAT-Charlie 299979 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1004-11 chr21 30247107 30247521 + 4 NA Intergenic L1ME3A|LINE|L1 -31217 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 508-42 chr11 104984475 104984743 + 4 NA Intergenic Intergenic -16035 NM_001225 837 Hs.138378 NM_001225 ENSG00000196954 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX caspase 4 protein-coding 516-39 chr11 107186982 107187130 + 4 NA Intergenic L1MA8|LINE|L1 -168580 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 468-278 chr6 44795857 44796103 + 4 NA Intergenic L1MC5a|LINE|L1 -244099 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 965-5 chr14 66656515 66657031 + 4 NA intron (NM_001024218, intron 1 of 21) Tigger1|DNA|TcMar-Tigger 149366 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 406-136 chr2 34650759 34650967 + 4 NA Intergenic Intergenic -26694 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 572-122 chr4 49100208 49100354 + 4 NA Intergenic (CATTC)n|Satellite|Satellite 113639 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 978-8 chr16 89027532 89028151 + 4 NA Intergenic L1MEc|LINE|L1 -50634 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 624-78 chr21 20106590 20106797 + 4 NA Intergenic Intergenic 151992 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 1682 chr1 40459464 40460226 + 4 NA intron (NM_001369565, intron 5 of 5) intron (NM_001369565, intron 5 of 5) 9369 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 858-51 chrX 43170842 43171310 + 4 NA Intergenic L2c|LINE|L2 -5918 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 566-150 chr4 170928323 170928569 + 4 NA Intergenic MIRc|SINE|MIR -112156 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 520-237 chr5 82497479 82497677 + 4 NA Intergenic L1MEd|LINE|L1 218116 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 666-4 chr10 16263439 16263688 + 4 NA Intergenic MIR3|SINE|MIR -173380 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 589-77 chr2 204080082 204080371 + 4 NA Intergenic Intergenic 143478 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 1559-2 chr15 69935684 69936341 + 4 NA Intergenic L1M3c|LINE|L1 100778 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 843-26 chr2 117413170 117413542 + 4 NA Intergenic Intergenic -401335 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 530-148 chr20 12185605 12185802 + 4 NA Intergenic L1ME1|LINE|L1 267810 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 1276-2 chr2 5369508 5370039 + 4 NA Intergenic Intergenic 321345 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 598-101 chr5 4596767 4597052 + 4 NA Intergenic Intergenic -176572 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 400-168 chr2 74756803 74757005 + 4 NA Intergenic L1MEg|LINE|L1 -75751 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 612-92 chr3 104903180 104903462 + 4 NA Intergenic L1M4c|LINE|L1 -463392 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 584-112 chr4 32287012 32287211 + 4 NA Intergenic Intergenic -63927 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 948-13 chr14 85781739 85782323 + 4 NA Intergenic Intergenic -152647 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 611-35 chr14 20596268 20596528 + 4 NA intron (NR_122043, intron 2 of 4) intron (NR_122043, intron 2 of 4) -5575 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 653-94 chr4 84818266 84818456 + 4 NA intron (NM_014991, intron 12 of 67) intron (NM_014991, intron 12 of 67) -147255 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 578-166 chr7 154621766 154621985 + 4 NA intron (NM_001290252, intron 5 of 23) intron (NM_001290252, intron 5 of 23) -306642 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 727-46 chr2 76145080 76145425 + 4 NA Intergenic L2|LINE|L2 -434337 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 711-6 chr1 209017148 209017391 + 4 NA Intergenic L1MC4a|LINE|L1 44815 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 781-8 chr11 29702112 29702465 + 4 NA Intergenic MER63D|DNA|hAT-Blackjack 83486 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 326-295 chr20 39165891 39166015 + 4 NA Intergenic MIRb|SINE|MIR 58795 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 635-91 chr5 130436544 130436835 + 4 NA Intergenic L1MEd|LINE|L1 532224 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 718-96 chr9 25189109 25189314 + 4 NA Intergenic Intergenic 489647 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 1053-20 chr8 89161636 89162073 + 4 NA Intergenic L1MEd|LINE|L1 595857 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 725-37 chr2 161524806 161525137 + 4 NA Intergenic L1MDa|LINE|L1 -17069 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 600-41 chr16 6145981 6146217 + 4 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 126396 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 1187 chr1 105487611 105488187 + 4 NA Intergenic LTR49-int|LTR|ERV1 131036 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 735-27 chr16 20126846 20127171 + 4 NA Intergenic LTR26|LTR|ERV1 -53230 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 647-52 chr2 133693173 133693570 + 4 NA Intergenic L1MEg|LINE|L1 -124908 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 792-7 chr10 73319112 73319524 + 4 NA intron (NM_001367801, intron 10 of 27) LTR39|LTR|ERV1 39436 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 684-21 chr11 40440644 40441066 + 4 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -147725 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 630-78 chr22 33452111 33452312 + 4 NA intron (NM_133642, intron 6 of 14) L2a|LINE|L2 -15542 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 488-42 chr11 7233063 7233236 + 4 NA Intergenic Intergenic -1617 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 882-23 chr2 121855077 121855481 + 4 NA Intergenic LTR37A|LTR|ERV1 99628 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 687-112 chr7 85938076 85938369 + 4 NA Intergenic Intergenic 517100 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 1105-7 chr16 63308842 63309172 + 4 NA Intergenic Intergenic -1272569 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 720-67 chr5 28652158 28652386 + 4 NA Intergenic Intergenic -274598 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 1947 chr18 10984664 10985643 + 4 NA intron (NM_022068, intron 2 of 51) L1MA10|LINE|L1 163609 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 957-5 chr11 80929165 80929604 + 4 NA Intergenic Charlie15b|DNA|hAT-Charlie -166581 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 635-86 chr5 28056187 28056541 + 4 NA Intergenic Intergenic 231301 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 543-254 chr8 137397617 137397801 + 4 NA Intergenic L1MC1|LINE|L1 15879 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 450-47 chr11 31383797 31384053 + 4 NA intron (NM_181706, intron 2 of 4) intron (NM_181706, intron 2 of 4) 14065 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 539-44 chr11 134378767 134378976 + 4 NA 3' UTR (NM_018644, exon 7 of 7) 3' UTR (NM_018644, exon 7 of 7) 33047 NM_018644 27087 Hs.381050 NM_018644 ENSG00000109956 B3GAT1 CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1 beta-1,3-glucuronyltransferase 1 protein-coding 916-2 chr10 31467833 31468291 + 4 NA intron (NM_001323678, intron 2 of 6) intron (NM_001323678, intron 2 of 6) -68307 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 536-122 chr2 83407847 83408083 + 4 NA Intergenic L1MEf|LINE|L1 -114849 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 998-14 chr2 194887013 194887399 + 4 NA Intergenic Intergenic 156611 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 870 chr10 44013346 44013758 + 4 NA Intergenic MIR|SINE|MIR 101150 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 549-192 chr7 40505210 40505430 + 4 NA intron (NM_001193312, intron 11 of 12) L1M4b|LINE|L1 370344 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 762-25 chr15 86105096 86105442 + 4 NA intron (NR_120368, intron 3 of 5) intron (NR_120368, intron 3 of 5) 11448 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 1350-3 chr21 19624635 19625248 + 4 NA Intergenic Intergenic 274814 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 1017-20 chr6 40066875 40067337 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -132644 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 716-3 chr1 174877961 174878218 + 4 NA intron (NM_001366451, intron 5 of 12) intron (NM_001366451, intron 5 of 12) 2571 NM_001035230 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 382-297 chr4 60239738 60239951 + 4 NA Intergenic L2c|LINE|L2 -682775 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 627-99 chr5 161502071 161502386 + 4 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 45896 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 1269-5 chr12 99050150 99050614 + 4 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) -42977 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 456-138 chr18 72519421 72519683 + 4 NA Intergenic Intergenic 24790 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 528-101 chr15 100287263 100287441 + 4 NA intron (NM_139057, intron 3 of 21) L1PA15|LINE|L1 54623 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 737-63 chr5 9394837 9395162 + 4 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -116334 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 1181-4 chr11 44213776 44214143 + 4 NA intron (NM_207122, intron 10 of 13) intron (NM_207122, intron 10 of 13) 96180 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 1307-9 chr9 26810400 26810927 + 4 NA Intergenic Intergenic 82139 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 686-82 chr8 121676024 121676212 + 4 NA Intergenic Intergenic -34678 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 562-215 chr8 84946488 84946782 + 4 NA Intergenic Intergenic -160603 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 706-35 chr18 5230112 5230355 + 4 NA Intergenic L1PB1|LINE|L1 7796 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 600-35 chr14 98018098 98018377 + 4 NA Intergenic Intergenic -40113 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 633-46 chr15 96101871 96102161 + 4 NA intron (NR_158193, intron 6 of 7) intron (NR_158193, intron 6 of 7) 25825 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 549-190 chr7 29993549 29993911 + 4 NA Intergenic AluSc|SINE|Alu -3441 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 678-49 chr2 41254709 41254917 + 4 NA Intergenic Intergenic -622742 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 870-4 chr11 103889764 103890161 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR 40056 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 478-42 chr11 72511786 72512004 + 4 NA Intergenic L1M4a2|LINE|L1 -58761 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 713-56 chr3 112823338 112823801 + 4 NA intron (NM_001370552, intron 6 of 7) MER21B|LTR|ERVL 21091 NR_149027 100129297 Hs.570655 NR_149026 CD200R1L-AS1 - CD200R1L antisense RNA 1 ncRNA 647-60 chr21 30573682 30573989 + 4 NA Intergenic Intergenic -12522 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 543-223 chr7 25367836 25368115 + 4 NA Intergenic Intergenic -139489 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 659-120 chr8 120643829 120644232 + 4 NA intron (NM_021021, intron 2 of 6) MLT1F1|LTR|ERVL-MaLR -117223 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 432-289 chr8 77761334 77761519 + 4 NA Intergenic L1MEc|LINE|L1 310729 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 673-53 chr2 43463627 43463991 + 4 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 132165 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 942 chr1 50259911 50260442 + 4 NA Intergenic Intergenic 150343 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 635-109 chr8 87273175 87273401 + 4 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 406873 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 498-129 chr2 114258717 114258941 + 4 NA Intergenic Intergenic -183812 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 384-142 chr17 51855601 51855826 + 4 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 303001 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 654-29 chr12 69938048 69938264 + 4 NA intron (NM_182530, intron 19 of 24) intron (NM_182530, intron 19 of 24) 112929 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 740-53 chr22 48765774 48766171 + 4 NA Intergenic L1MA10|LINE|L1 -14323 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 685-84 chr7 13471465 13471848 + 4 NA Intergenic L1M4c|LINE|L1 514858 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 1061-13 chr7 109616762 109617089 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 343288 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 774-49 chr2 181877685 181877927 + 4 NA Intergenic Intergenic -13924 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 600-13 chr10 43631181 43631554 + 4 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) 2550 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 732-44 chr2 50945366 50945616 + 4 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 86641 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1553-2 chr8 139059474 139060314 + 4 NA Intergenic L1MCc|LINE|L1 -145853 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 394-278 chr5 124762559 124762679 + 4 NA Intergenic Intergenic -17507 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 562-95 chr2 16935783 16935977 + 4 NA Intergenic Intergenic -270046 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 343-250 chr2 81888468 81888618 + 4 NA Intergenic L1PA16|LINE|L1 -421597 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 944-17 chr21 30838818 30839244 + 4 NA Intergenic Intergenic -9272 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 565-102 chr20 46699213 46699472 + 4 NA Intergenic Intergenic -9898 NM_033550 112858 Hs.440263 NM_033550 ENSG00000172315 TP53RK BUD32|C20orf64|GAMOS4|Nori-2|Nori-2p|PRPK|dJ101A2 TP53 regulating kinase protein-coding 699-39 chr16 86643559 86643804 + 4 NA Intergenic Intergenic 65172 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 654-66 chr2 80594375 80594568 + 4 NA intron (NM_001282599, intron 9 of 11) L1MB3|LINE|L1 281092 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 1072-11 chr20 43307503 43307989 + 4 NA Intergenic Charlie4a|DNA|hAT-Charlie -117840 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 530-36 chr10 119581393 119581600 + 4 NA intron (NM_001323964, intron 5 of 12) intron (NM_001323964, intron 5 of 12) 15533 NM_001323965 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 838-38 chr8 88778905 88779199 + 4 NA Intergenic L1MEc|LINE|L1 -451569 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 683-76 chr7 3331808 3332213 + 4 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 30758 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 867-46 chr9 105942216 105942665 + 4 NA Intergenic MLT1N2|LTR|ERVL-MaLR 247899 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 353-551 chr9 24049744 24049836 + 4 NA Intergenic Intergenic -199189 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 1224-2 chr2 209221012 209221586 + 4 NA Intergenic L1M5|LINE|L1 -202748 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 566-31 chr12 34507769 34508052 + 4 NA Intergenic ALR/Alpha|Satellite|centr 485414 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1120 chr11 98172704 98173172 + 4 NA Intergenic Intergenic -848011 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 986-32 chr7 5064699 5065128 + 4 NA exon (NM_021163, exon 5 of 5) exon (NM_021163, exon 5 of 5) -7147 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 996-3 chr1 98529563 98529889 + 4 NA Intergenic L2a|LINE|L2 -131995 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 580-77 chr2 26526722 26526890 + 4 NA intron (NM_194248, intron 3 of 46) L3|LINE|CR1 31950 NM_001287489 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 720-33 chr16 73411261 73411572 + 4 NA intron (NR_038234, intron 1 of 2) intron (NR_038234, intron 1 of 2) 24611 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 1665 chr11 15752465 15753104 + 4 NA Intergenic Intergenic 108899 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 879-14 chr19 44315997 44316363 + 4 NA Intergenic L1MEg|LINE|L1 -11155 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 638-91 chr3 96129013 96129265 + 4 NA Intergenic L1MA6|LINE|L1 -230825 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 627-97 chr5 148002330 148002604 + 4 NA Intergenic MER61-int|LTR|ERV1 -61505 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 678-88 chr5 58528892 58529155 + 4 NA Intergenic Intergenic 1086 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 718-83 chr6 72847704 72848033 + 4 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 119885 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 814-39 chr20 22554684 22555063 + 4 NA Intergenic Intergenic 23769 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 880-50 chr8 135063442 135063823 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -170499 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1035-3 chr12 65573835 65574424 + 4 NA intron (NR_120434, intron 3 of 4) L1ME1|LINE|L1 -16818 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 1167-16 chr6 134305714 134306206 + 4 NA intron (NM_001143676, intron 1 of 13) L2c|LINE|L2 12098 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 1165-7 chr2 108199781 108200337 + 4 NA intron (NR_131251, intron 1 of 4) MER65C|LTR|ERV1 17782 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 866-6 chr1 195909508 195909951 + 4 NA Intergenic MLT1H1|LTR|ERVL-MaLR 178986 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 973-4 chr10 52087565 52087984 + 4 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 226354 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 420-81 chr14 53590345 53590549 + 4 NA Intergenic Intergenic 358037 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 406-304 chr8 133680691 133680810 + 4 NA intron (NR_134462, intron 1 of 2) HAL1|LINE|L1 3316 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 583-179 chrX 75737710 75737958 + 4 NA Intergenic Intergenic 5245 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 609-95 chr5 15746829 15747083 + 4 NA intron (NM_001278317, intron 2 of 3) MER5C|DNA|hAT-Charlie -131954 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 1429-2 chr12 94352818 94353401 + 4 NA intron (NR_160431, intron 7 of 12) L1MA5|LINE|L1 90588 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 410-213 chr4 40483780 40483922 + 4 NA intron (NM_001098634, intron 2 of 6) L1ME4a|LINE|L1 18268 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 614-102 chr5 105008758 105008976 + 4 NA Intergenic Intergenic -90607 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 1077-13 chr5 166845951 166846336 + 4 NA Intergenic Intergenic 80227 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 712-27 chr14 48882896 48883197 + 4 NA Intergenic Intergenic 703334 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 1332-3 chr15 70230919 70231361 + 4 NA Intergenic HAL1ME|LINE|L1 -133223 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 801-19 chr17 34858540 34858931 + 4 NA Intergenic L3|LINE|CR1 102725 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 706-44 chr2 211936773 211937042 + 4 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 489453 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 951-12 chr19 43861655 43862093 + 4 NA Intergenic L1MA5A|LINE|L1 18262 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 731-31 chr15 100384905 100385254 + 4 NA intron (NR_120374, intron 1 of 4) intron (NR_120374, intron 1 of 4) 12140 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 912-45 chr8 121264188 121264473 + 4 NA Intergenic L2c|LINE|L2 -375016 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 846-13 chr13 26283915 26284554 + 4 NA intron (NM_001318368, intron 1 of 12) L1PB3|LINE|L1 30105 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 674-40 chr18 3390239 3390551 + 4 NA Intergenic MLT1H2|LTR|ERVL-MaLR -21532 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 1396-11 chr8 142421320 142421901 + 4 NA Intergenic L1MEf|LINE|L1 -18428 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 603-95 chr2 209408040 209408289 + 4 NA Intergenic L1MB7|LINE|L1 -15883 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 590-105 chr3 100154421 100154601 + 4 NA intron (NM_001167924, intron 2 of 9) L1M5|LINE|L1 -31313 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 509-202 chr5 105357723 105358012 + 4 NA Intergenic L1M5|LINE|L1 258393 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 1161-4 chr2 15113494 15113948 + 4 NA Intergenic HAL1M8|LINE|L1 447613 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1067 chr1 172958350 172958709 + 4 NA Intergenic Intergenic 92434 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 1302-4 chr2 76176274 76176844 + 4 NA Intergenic L1MA6|LINE|L1 -465644 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 670-78 chr3 78018186 78018434 + 4 NA Intergenic L2a|LINE|L2 30653 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 1166-3 chr19 30888821 30889442 + 4 NA Intergenic Intergenic -278379 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 749-14 chr10 37794652 37794984 + 4 NA non-coding (NR_051997, exon 1 of 1) non-coding (NR_051997, exon 1 of 1) 357 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 726-25 chr14 32971711 32971918 + 4 NA intron (NM_001165893, intron 1 of 10) Charlie19a|DNA|hAT-Charlie 32935 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 1173-2 chr13 109401607 109402090 + 4 NA TTS (NR_126361) TTS (NR_126361) 1152 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 509-84 chr16 60738280 60738514 + 4 NA Intergenic Intergenic 317369 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 767-23 chr2 48276538 48276906 + 4 NA Intergenic HAL1M8|LINE|L1 -37960 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 734-3 chr1 114999932 115000217 + 4 NA Intergenic L2|LINE|L2 -29750 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 1125-10 chr3 7615895 7616278 + 4 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -80802 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 916-13 chr19 37688427 37688896 + 4 NA intron (NM_152605, intron 2 of 3) MER67D|LTR|ERV1 3654 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 694-3 chr1 106042486 106042783 + 4 NA Intergenic L2b|LINE|L2 -14381 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 715-49 chr3 14262474 14262724 + 4 NA Intergenic Intergenic 83782 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 587-167 chr8 116149469 116149704 + 4 NA intron (NR_046215, intron 4 of 13) HERVL-int|LTR|ERVL 175473 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 523-231 chr5 144530767 144531045 + 4 NA Intergenic Tigger19a|DNA|TcMar-Tigger 325515 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 747-33 chr2 124658461 124658832 + 4 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 633359 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 459-331 chr9 107648671 107648926 + 4 NA Intergenic Intergenic -159029 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 1238-8 chr8 126285807 126286271 + 4 NA Intergenic Intergenic -39456 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 831-20 chr2 53839780 53840148 + 4 NA intron (NM_001164165, intron 1 of 9) intron (NM_001164165, intron 1 of 9) 9241 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 2814 chr8 115166178 115167343 + 4 NA Intergenic L1MB3|LINE|L1 501253 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 730-26 chr2 33831847 33832244 + 4 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -103828 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 643-138 chrX 58303121 58303289 + 4 NA Intergenic ALR/Alpha|Satellite|centr -392572 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 735-87 chr9 28283759 28284071 + 4 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 435390 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1069-9 chr3 109715928 109716405 + 4 NA Intergenic L2a|LINE|L2 113338 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 1450-6 chr8 144932649 144933473 + 4 NA intron (NM_006958, intron 2 of 2) intron (NM_006958, intron 2 of 2) 17819 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 673-18 chr10 66698452 66698642 + 4 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -227489 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 902-31 chr5 35980557 35981048 + 4 NA intron (NM_001171873, intron 3 of 5) intron (NM_001171873, intron 3 of 5) 10588 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 2569 chr22 26937169 26938627 + 4 NA Intergenic L1ME1|LINE|L1 34606 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 414-345 chr9 4440897 4441162 + 4 NA Intergenic L1M2|LINE|L1 -49439 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 624-93 chr4 124545582 124545817 + 4 NA intron (NR_110838, intron 2 of 8) L1ME1|LINE|L1 12735 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 455-191 chr4 105972110 105972330 + 4 NA TTS (NM_001184691) TTS (NM_001184691) 50258 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 659-68 chr3 10388587 10388875 + 4 NA intron (NM_001001331, intron 5 of 22) Charlie4a|DNA|hAT-Charlie 5831 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 520-307 chr8 122584992 122585159 + 4 NA Intergenic Intergenic -16431 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 771-56 chr3 110970533 110970749 + 4 NA Intergenic Intergenic 99318 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 493-225 chr4 52458697 52458950 + 4 NA Intergenic L1MEf|LINE|L1 197716 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 579-101 chr3 75870066 75870243 + 4 NA Intergenic Intergenic -84605 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 474-210 chr4 71478917 71479123 + 4 NA intron (NM_003759, intron 11 of 22) intron (NM_003759, intron 11 of 22) 139967 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 824-34 chr4 95909694 95909971 + 4 NA Intergenic Intergenic 69739 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 476-186 chr3 182132713 182132907 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 180446 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 1002-11 chr4 56745098 56745458 + 4 NA Intergenic MER49|LTR|ERV1 -63572 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 1263-2 chr16 80225984 80226601 + 4 NA intron (NR_120307, intron 2 of 5) MLT1H|LTR|ERVL-MaLR -314442 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 697-60 chr5 18658687 18658928 + 4 NA Intergenic L1MD2|LINE|L1 851533 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 721-69 chr5 68593366 68593621 + 4 NA Intergenic Intergenic 300916 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 702-39 chr2 11936458 11936740 + 4 NA Intergenic Intergenic -70517 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 569-40 chr11 96061888 96062094 + 4 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -137784 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 575-26 chr11 24509574 24509812 + 4 NA intron (NM_001252008, intron 1 of 11) (TA)n|Simple_repeat|Simple_repeat 12640 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 730-40 chr20 43881277 43881561 + 4 NA Intergenic L1MC4|LINE|L1 -13299 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 562-67 chr15 93381393 93381597 + 4 NA Intergenic L1MA5A|LINE|L1 175429 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 720-73 chr5 156047727 156047954 + 4 NA Intergenic L1PA4|LINE|L1 -278917 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 1153-15 chr8 47245129 47245790 + 4 NA Intergenic L1MB5|LINE|L1 -15419 NM_001352934 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 457-143 chr20 54349163 54349351 + 4 NA Intergenic Intergenic -126336 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 635-83 chr4 99718478 99718697 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -63908 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 552-123 chr20 45550816 45551128 + 4 NA TTS (NM_181510) TTS (NM_181510) -3571 NM_001198986 100526773 Hs.274876 NM_001198986 ENSG00000249139 EPPIN-WFDC6 SPINLW1-WFDC6 EPPIN-WFDC6 readthrough protein-coding 424-36 chr11 15431988 15432128 + 4 NA Intergenic MER113|DNA|hAT-Charlie -211827 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 699-62 chr20 42754459 42754978 + 4 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 69235 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 675-32 chr15 27595935 27596273 + 4 NA Intergenic Intergenic -434785 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 608-103 chr3 185011223 185011448 + 4 NA intron (NM_001009921, intron 44 of 46) L1M4a1|LINE|L1 141725 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 659-6 chr1 244129620 244129784 + 4 NA Intergenic Intergenic 76497 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 905-18 chr2 132924571 132925012 + 4 NA intron (NR_135572, intron 1 of 1) intron (NR_135572, intron 1 of 1) 9234 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 703-12 chr10 53517206 53517522 + 4 NA Intergenic L2c|LINE|L2 -745664 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 773-50 chr8 132592124 132592383 + 4 NA intron (NR_135913, intron 9 of 10) L2c|LINE|L2 -30774 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 656-120 chr7 65292942 65293172 + 4 NA Intergenic Intergenic -80742 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 1180-3 chr10 49685582 49686075 + 4 NA intron (NM_182554, intron 1 of 2) L1MB8|LINE|L1 6177 NM_182554 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 714-14 chr11 109698033 109698226 + 4 NA Intergenic L1PA16|LINE|L1 275939 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 1156-6 chr3 19324994 19325542 + 4 NA intron (NM_144633, intron 3 of 15) L1PA13|LINE|L1 -10337 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 476-71 chr13 36019591 36019781 + 4 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 111696 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 627-47 chr19 36393328 36393585 + 4 NA exon (NM_133466, exon 5 of 5) exon (NM_133466, exon 5 of 5) -14255 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 784-21 chr16 56175392 56175804 + 4 NA intron (NR_027078, intron 2 of 4) L1MB7|LINE|L1 15496 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 624-20 chr10 128633342 128633628 + 4 NA Intergenic L1MC4a|LINE|L1 -279348 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 619-54 chr15 87104848 87105192 + 4 NA Intergenic L1MA4A|LINE|L1 -116594 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 766-77 chrX 58183763 58184022 + 4 NA Intergenic ALR/Alpha|Satellite|centr -273259 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 536-131 chr2 155791970 155792188 + 4 NA Intergenic Intergenic 462852 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 710-42 chr2 102469411 102469899 + 4 NA Intergenic L1M4b|LINE|L1 -3571 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 829-7 chr10 56863298 56863614 + 4 NA Intergenic Intergenic 441103 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 707-59 chr2 234569059 234569381 + 4 NA Intergenic MER91C|DNA|hAT-Tip100 -72139 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 900-24 chr20 42939573 42939998 + 4 NA intron (NM_133170, intron 1 of 31) L2a|LINE|L2 -28958 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 1663 chr2 94509777 94510526 + 4 NA Intergenic ALR/Alpha|Satellite|centr 77032 NR_024443 100133920 Hs.645503 NR_024443 ENSG00000261522 LOC100133920 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene pseudo 842-16 chr18 2137481 2137862 + 4 NA Intergenic L1ME3Cz|LINE|L1 433834 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 618-43 chr17 13779147 13779377 + 4 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -177333 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 566-91 chr2 105723263 105723486 + 4 NA Intergenic Intergenic -21538 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 616-172 chr8 88777289 88777554 + 4 NA Intergenic L1MA4|LINE|L1 -449938 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 1146-15 chrX 63625546 63626114 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 45672 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 510-135 chr2 22735586 22735848 + 4 NA Intergenic Intergenic 199238 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 917-25 chr7 101583422 101583768 + 4 NA Intergenic LTR16E1|LTR|ERVL -14589 NR_103747 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 534-142 chr20 22056955 22057115 + 4 NA intron (NR_038394, intron 1 of 3) intron (NR_038394, intron 1 of 3) 2945 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 1274-7 chrX 93972634 93973077 + 4 NA Intergenic L1PA10|LINE|L1 298649 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 1046-9 chr2 34727491 34728043 + 4 NA Intergenic L1M4|LINE|L1 50210 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 1090-11 chr8 87262743 87263274 + 4 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 396593 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 476-275 chr8 122812664 122812898 + 4 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 31126 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 728-104 chr8 131634522 131634804 + 4 NA Intergenic Intergenic -269430 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 724-106 chrX 83731183 83731445 + 4 NA Intergenic L1MA4|LINE|L1 -129812 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 1206-10 chr7 20849867 20850435 + 4 NA intron (NR_126381, intron 1 of 5) intron (NR_126381, intron 1 of 5) 14720 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 747-13 chr11 116633662 116633945 + 4 NA Intergenic Intergenic -5619 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 626-49 chr17 72102687 72102935 + 4 NA intron (NR_103738, intron 2 of 6) intron (NR_103738, intron 2 of 6) 13205 NR_103738 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 2656 chr4_GL000008v2_random 1627 2933 + 4 NA Intergenic Intergenic 175891 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 574-38 chr14 55054542 55054706 + 4 NA intron (NM_144578, intron 1 of 3) intron (NM_144578, intron 1 of 3) 2977 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 1279-5 chr4 26113903 26114335 + 4 NA Intergenic Intergenic 199927 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 569-15 chr1 197026104 197026357 + 4 NA Intergenic L1PA16|LINE|L1 41037 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 1010-4 chr14 53983435 53983849 + 4 NA Intergenic Intergenic -26751 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 806-40 chr3 44714034 44714387 + 4 NA intron (NM_001134441, intron 1 of 2) intron (NM_001134441, intron 1 of 2) 1550 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 813-33 chr5 51420833 51421238 + 4 NA Intergenic Intergenic 37587 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 997-17 chr20 12396796 12397152 + 4 NA Intergenic LTR16E1|LTR|ERVL 479081 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 1056-20 chr8 61857955 61858415 + 4 NA Intergenic L1MD1|LINE|L1 -31654 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 988-30 chr5 125538564 125538991 + 4 NA intron (NR_109887, intron 3 of 3) L1M3|LINE|L1 45516 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 1127-9 chr8 135360995 135361640 + 4 NA Intergenic Intergenic -96139 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 889-34 chr7 45522940 45523420 + 4 NA Intergenic Intergenic -50960 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 960-42 chr8 137177280 137177686 + 4 NA Intergenic L1MC2|LINE|L1 236105 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 806-19 chr16 5364031 5364408 + 4 NA Intergenic Intergenic 252031 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 806-18 chr15 96522787 96523169 + 4 NA Intergenic L1MA5|LINE|L1 189213 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 900-26 chr21 29381112 29381514 + 4 NA Intergenic Intergenic 8812 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 609-23 chr12 59517877 59518076 + 4 NA Intergenic L1ME1|LINE|L1 -78053 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 572-99 chr2 230267641 230267845 + 4 NA intron (NM_001278453, intron 9 of 23) intron (NM_001278453, intron 9 of 23) 42007 NM_007237 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 604-64 chr17 59660061 59660361 + 4 NA intron (NM_001288653, intron 6 of 31) intron (NM_001288653, intron 6 of 31) 40316 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 448-106 chr2 39787501 39787681 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -8315 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 603 chr1 14547291 14547564 + 4 NA Intergenic MIR3|SINE|MIR -51258 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 754-63 chr5 18498376 18498662 + 4 NA Intergenic Charlie8|DNA|hAT-Charlie 691245 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 502-16 chr1 173175287 173175512 + 4 NA Intergenic L2a|LINE|L2 30133 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 1768-3 chr6 61477380 61478131 + 4 NA Intergenic ALR/Alpha|Satellite|centr -96375 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 502 chr1 36713796 36713979 + 4 NA Intergenic L1MB7|LINE|L1 -230573 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 865-29 chr21 31592413 31592900 + 4 NA Intergenic Charlie1|DNA|hAT-Charlie 33423 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 2389-2 chr8 134201256 134202357 + 4 NA Intergenic MER21C|LTR|ERVL 315310 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 1253-9 chr5 154175027 154175508 + 4 NA Intergenic Intergenic -15466 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 1921 chr4 1485287 1486197 + 4 NA Intergenic MER2|DNA|TcMar-Tigger -79300 NM_001290079 54729 Hs.526396 NM_001290079 ENSG00000235608 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 613-12 chr1 227648027 227648260 + 4 NA intron (NM_178549, intron 3 of 3) (TATAA)n|Simple_repeat|Simple_repeat 49564 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 1680-3 chr2 39562356 39563255 + 4 NA intron (NR_037875, intron 5 of 5) L1MA4A|LINE|L1 -102693 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 571-47 chr14 67885380 67885554 + 4 NA intron (NM_133509, intron 5 of 10) intron (NM_133509, intron 5 of 10) 61875 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 728-41 chr18 62016536 62017049 + 4 NA Intergenic L1MA8|LINE|L1 -123785 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 720-25 chr13 50482968 50483252 + 4 NA intron (NR_109974, intron 4 of 6) L1MC5|LINE|L1 44339 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 1045-24 chr8 84305290 84305610 + 4 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -110034 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 667-54 chr2 201432071 201432405 + 4 NA intron (NM_015049, intron 1 of 15) intron (NM_015049, intron 1 of 15) 19220 NM_015049 66008 Hs.152774 NM_015049 ENSG00000115993 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking kinesin protein 2 protein-coding 676-96 chr5 119994563 119994845 + 4 NA Intergenic AluJo|SINE|Alu 365145 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 1103-14 chr8 71689147 71689577 + 4 NA Intergenic L1MC5|LINE|L1 -141268 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 1121-9 chr6 163320516 163320829 + 4 NA intron (NR_028390, intron 2 of 5) intron (NR_028390, intron 2 of 5) 3801 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 596-160 chr8 49326662 49326903 + 4 NA Intergenic Intergenic 185398 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 695-13 chr10 44439092 44439403 + 4 NA Intergenic Intergenic -54150 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 933-22 chr2 204215990 204216433 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger 279463 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 434-175 chr3 14502023 14502156 + 4 NA intron (NM_001080423, intron 21 of 23) L1MC4|LINE|L1 38253 NM_001080423 80852 Hs.517819 NM_001080423 ENSG00000144596 GRIP2 - glutamate receptor interacting protein 2 protein-coding 863-21 chr2 100163524 100163910 + 4 NA Intergenic L1MEg|LINE|L1 -21127 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 638-156 chr8 84355703 84355934 + 4 NA intron (NM_001354319, intron 2 of 8) L2c|LINE|L2 -59666 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 595-4 chr1 63078036 63078219 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -65656 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 686-2 chr1 55229309 55229535 + 4 NA intron (NR_146283, intron 1 of 1) L2|LINE|L2 3781 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 750-40 chr2 229497350 229497705 + 4 NA intron (NM_139072, intron 6 of 12) L1M2|LINE|L1 217028 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 920-25 chr8 34053326 34053785 + 4 NA Intergenic L1PBa|LINE|L1 -453449 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 836-57 chr7 36140941 36141215 + 4 NA Intergenic L1MEf|LINE|L1 -12176 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 944-11 chr19 34622257 34622564 + 4 NA intron (NR_027620, intron 1 of 3) LTR25-int|LTR|ERV1 -23463 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 1202 chr12 92499146 92499784 + 4 NA Intergenic L2b|LINE|L2 32786 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 718-38 chr18 50961862 50962174 + 4 NA Intergenic L1M4b|LINE|L1 -6022 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 768-53 chr8 82580836 82581263 + 4 NA Intergenic L1MA4A|LINE|L1 -331055 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 667-64 chr3 52286051 52286234 + 4 NA Intergenic LTR24B|LTR|ERV1 -1678 NM_001144951 132158 Hs.415312 NM_145262 ENSG00000168237 GLYCTK HBEBP2|HBEBP4|HBeAgBP4A glycerate kinase protein-coding 992-15 chr4 58695863 58696207 + 4 NA Intergenic L1MA4|LINE|L1 -159707 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 686-59 chr4 73382073 73382351 + 4 NA Intergenic Intergenic -22075 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 793 chr1 76655166 76655506 + 4 NA Intergenic L1MEg|LINE|L1 123931 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 948-29 chr5 141240170 141240553 + 4 NA non-coding (NR_001282, exon 1 of 1) non-coding (NR_001282, exon 1 of 1) 240 NR_001282 84054 Hs.570898 NR_001282 PCDHB19P PCDH-PSI5|PCDHB19 protocadherin beta 19 pseudogene pseudo 1104-9 chr6 160267438 160267868 + 4 NA Intergenic MER21-int|LTR|ERVL -8832 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 1631 chr2 185792766 185793610 + 4 NA exon (NM_173651, exon 16 of 23) exon (NM_173651, exon 16 of 23) 6962 NR_144453 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 327-492 chr8 88941278 88941443 + 4 NA Intergenic L1MC5|LINE|L1 -613877 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 390-360 chr7 82531302 82531441 + 4 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -87415 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 513-256 chr7 4376466 4376697 + 4 NA Intergenic MER41B|LTR|ERV1 -241744 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 454-183 chr2 222386963 222387114 + 4 NA Intergenic Intergenic -36950 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 1237-12 chrX 66260193 66260706 + 4 NA intron (NM_001367233, intron 19 of 20) intron (NM_001367233, intron 19 of 20) 92699 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 759-68 chr7 156314778 156315057 + 4 NA Intergenic L1MA9|LINE|L1 130671 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 794-5 chr1 99224202 99224567 + 4 NA Intergenic Intergenic -39908 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 754-46 chr20 39277420 39277752 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR -52838 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 528-91 chr15 47044625 47044784 + 4 NA Intergenic MER4B|LTR|ERV1 -139385 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 1302 chr10 71946687 71947437 + 4 NA Intergenic MLT1F2|LTR|ERVL-MaLR -17333 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 586-142 chr7 62638533 62638690 + 4 NA Intergenic ALR/Alpha|Satellite|centr 665445 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 640-34 chr14 68230805 68231180 + 4 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 397795 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 736-20 chr12 34513890 34514247 + 4 NA Intergenic ALR/Alpha|Satellite|centr 491572 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 505-289 chr7 80540004 80540245 + 4 NA Intergenic Intergenic -28060 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 552-43 chr12 18348569 18348726 + 4 NA intron (NM_004570, intron 11 of 31) intron (NM_004570, intron 11 of 31) 87107 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 454-274 chr6 61646572 61646759 + 4 NA intron (NR_146874, intron 13 of 13) intron (NR_146874, intron 13 of 13) 72535 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 796-43 chr5 42682168 42682593 + 4 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) -74438 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 457-194 chr5 20396665 20396894 + 4 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 91228 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 1064-7 chr2 75259068 75259679 + 4 NA Intergenic L1MB7|LINE|L1 -59853 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 674-51 chr20 56902746 56902969 + 4 NA Intergenic Intergenic 273551 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 484-290 chr9 129295929 129296102 + 4 NA Intergenic L1MDa|LINE|L1 13599 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 454-26 chr10 61532370 61532497 + 4 NA Intergenic Intergenic 52392 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 1061-6 chr17 16625661 16626150 + 4 NA intron (NM_020787, intron 5 of 5) intron (NM_020787, intron 5 of 5) 27945 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 394-79 chr12 28953398 28953584 + 4 NA Intergenic L1M5|LINE|L1 -195787 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 716-21 chr13 72061749 72062075 + 4 NA Intergenic L1M1|LINE|L1 -194708 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 712-23 chr12 132935341 132935566 + 4 NA intron (NM_001164715, intron 2 of 4) L1MC4|LINE|L1 20853 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 1589 chr1 95837156 95838169 + 4 NA Intergenic L1MA4A|LINE|L1 -154406 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 622-38 chr16 59336392 59336568 + 4 NA Intergenic Intergenic 418711 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 490-110 chr17 63167197 63167349 + 4 NA intron (NM_025185, intron 4 of 25) MIRb|SINE|MIR 201038 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 1150-2 chr10 69533635 69534133 + 4 NA Intergenic MER21B|LTR|ERVL 39538 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 459-245 chr5 123878941 123879165 + 4 NA Intergenic MER113A|DNA|hAT-Charlie 333636 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 763-5 chr10 5417351 5417565 + 4 NA intron (NM_001047160, intron 1 of 11) LTR1|LTR|ERV1 4901 NM_001047160 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 635-50 chr2 12044325 12044640 + 4 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 37366 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 626-22 chr11 27833589 27833905 + 4 NA Intergenic Intergenic -111717 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 628-82 chr20 42286465 42286708 + 4 NA intron (NM_133170, intron 12 of 31) L1MA5A|LINE|L1 -398897 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 606-69 chr18 48364485 48364642 + 4 NA intron (NM_001371291, intron 1 of 6) L2b|LINE|L2 11064 NM_001371291 567-62 chr15 98176036 98176437 + 4 NA Intergenic L1M5|LINE|L1 -87483 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 871-2 chr1 236322956 236323496 + 4 NA Intergenic L1M4c|LINE|L1 -41268 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 396-194 chr20 34212179 34212283 + 4 NA Intergenic L1MC4|LINE|L1 -48134 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 794-22 chr18 48214887 48215255 + 4 NA intron (NM_001371285, intron 1 of 5) intron (NM_001371285, intron 1 of 5) -21145 NM_001371288 1190 chr17 69232238 69232687 + 4 NA TTS (NR_130736) TTS (NR_130736) 2550 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 968-20 chr5 3808112 3808568 + 4 NA Intergenic Intergenic 212508 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 1255-6 chr2 81495961 81496743 + 4 NA Intergenic Intergenic -29406 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 721-26 chr17 55381426 55381749 + 4 NA Intergenic L2c|LINE|L2 40248 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 705-14 chr11 24995809 24996070 + 4 NA intron (NM_001009909, intron 9 of 11) L1MEf|LINE|L1 498886 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 656-78 chr3 46034571 46034848 + 4 NA Intergenic L1PB4|LINE|L1 -7226 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 968-4 chr12 24419279 24419670 + 4 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 143017 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 602-138 chr8 132947829 132948224 + 4 NA intron (NM_003235, intron 26 of 47) L3|LINE|CR1 81068 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 1220-9 chr5 96232950 96233525 + 4 NA intron (NR_130776, intron 1 of 4) L1ME3Cz|LINE|L1 154099 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 619-80 chr22 26818236 26818468 + 4 NA Intergenic Intergenic -41859 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 1079-13 chr8 130993044 130993539 + 4 NA intron (NM_001115, intron 1 of 17) L1ME4a|LINE|L1 47618 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 740-29 chr16 5179417 5179715 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR -81746 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 611 chr1 38752115 38752367 + 4 NA Intergenic L2c|LINE|L2 107531 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 1659-2 chr8 43851568 43852332 + 4 NA Intergenic ALR/Alpha|Satellite|centr 559508 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 588-17 chr11 13055669 13055849 + 4 NA Intergenic L1ME4c|LINE|L1 46443 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 884-9 chr14 68148968 68149402 + 4 NA intron (NM_133509, intron 7 of 10) L1MEc|LINE|L1 325593 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 664-79 chr4 116650 116831 + 4 NA Intergenic Intergenic -7736 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 550-116 chr2 102305661 102305819 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR -5762 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 726-82 chr8 139670436 139670754 + 4 NA intron (NR_104210, intron 1 of 3) MER2|DNA|TcMar-Tigger 32528 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 653-104 chr6 9221558 9221732 + 4 NA Intergenic L2b|LINE|L2 569436 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 991-19 chr5 46397236 46397649 + 4 NA Intergenic ALR/Alpha|Satellite|centr -701062 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 397-307 chr7 53054930 53055173 + 4 NA Intergenic L1MA6|LINE|L1 19418 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 593-38 chr13 40118346 40118637 + 4 NA Intergenic Intergenic -63318 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 753-56 chr8 88181509 88181869 + 4 NA intron (NM_005941, intron 3 of 9) L1MC2|LINE|L1 145794 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 1075-4 chr12 8968406 8968845 + 4 NA intron (NR_137427, intron 1 of 2) L1MEc|LINE|L1 18581 NM_001329103 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 640-86 chr3 169006310 169006615 + 4 NA Intergenic L1PA4|LINE|L1 104517 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 2349 chr10 58535756 58536987 + 4 NA intron (NM_001080512, intron 1 of 20) L1PB4|LINE|L1 23499 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 1186-9 chr14 63812784 63813405 + 4 NA Intergenic MER31-int|LTR|ERV1 -39871 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 470-120 chr2 31889566 31889763 + 4 NA intron (NM_001301852, intron 5 of 7) intron (NM_001301852, intron 5 of 7) -85684 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 838-44 chr9 75602352 75602731 + 4 NA Intergenic AluSx|SINE|Alu -288103 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 167-62 chr2 128830955 128830998 + 4 NA Intergenic Intergenic -33624 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 700-100 chr9 25970919 25971180 + 4 NA Intergenic MER33|DNA|hAT-Charlie -95626 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 1108-13 chr5 18679420 18679953 + 4 NA Intergenic Intergenic 872412 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 1292-6 chr8 118511314 118512101 + 4 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -109294 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 732-54 chr20 59711359 59711677 + 4 NA intron (NM_001199506, intron 1 of 12) MER47A|DNA|TcMar-Tigger -9692 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 693-40 chr16 6401377 6401642 + 4 NA intron (NM_018723, intron 2 of 15) L1ME4c|LINE|L1 -372300 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 617-127 chr8 30435309 30435492 + 4 NA intron (NM_001008710, intron 1 of 8) intron (NM_001008710, intron 1 of 8) -49999 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 517-205 chr5 2027857 2028110 + 4 NA Intergenic L1M4a2|LINE|L1 140652 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 686-35 chr19 43864295 43864591 + 4 NA Intergenic L1ME2|LINE|L1 15693 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 1049-6 chr13 47570540 47571080 + 4 NA Intergenic AluSg|SINE|Alu 361812 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 891-16 chr15 100147912 100148290 + 4 NA intron (NM_139057, intron 10 of 21) MLT1D|LTR|ERVL-MaLR 193874 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 640-54 chr19 29141157 29141463 + 4 NA Intergenic L1PA17|LINE|L1 71841 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 514-79 chr14 25923367 25923568 + 4 NA Intergenic L1ME1|LINE|L1 629963 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 702-66 chr3 149878110 149878538 + 4 NA intron (NM_183383, intron 3 of 8) GA-rich|Low_complexity|Low_complexity 65636 NM_183383 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 598-60 chr18 67700238 67700423 + 4 NA intron (NR_033921, intron 1 of 4) L2a|LINE|L2 114492 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 1086-8 chr11 12394040 12394531 + 4 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 16714 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 830-25 chr2 114388027 114388374 + 4 NA Intergenic Intergenic -54441 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 783-52 chr3 74943383 74943763 + 4 NA Intergenic Intergenic -270903 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 750-23 chr16 72486955 72487262 + 4 NA intron (NR_159371, intron 3 of 5) AluSz|SINE|Alu 177862 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 527-75 chr14 31985520 31985774 + 4 NA Intergenic L1MEf|LINE|L1 40794 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 1021-8 chr19 2849944 2850352 + 4 NA intron (NM_152791, intron 1 of 3) intron (NM_152791, intron 1 of 3) 8673 NM_152791 148254 Hs.47712 NM_152791 ENSG00000186300 ZNF555 - zinc finger protein 555 protein-coding 834-54 chr8 132113999 132114328 + 4 NA Intergenic AluSx1|SINE|Alu -8898 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 566-81 chr19 57638079 57638263 + 4 NA intron (NM_001322306, intron 3 of 4) AluSx|SINE|Alu 5003 NM_198855 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 576-55 chr15 26184276 26184539 + 4 NA Intergenic Intergenic 68594 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 1099-4 chr11 22023586 22024264 + 4 NA Intergenic L1M4|LINE|L1 -169160 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 1406-2 chr20 44865808 44866584 + 4 NA Intergenic AluSz|SINE|Alu -19509 NM_003404 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 654-18 chr10 62990804 62991061 + 4 NA Intergenic Intergenic -142315 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 1062-7 chr18 27690855 27691320 + 4 NA Intergenic Intergenic 345554 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 1845 chr2 217762260 217763228 + 4 NA Intergenic L1MC4|LINE|L1 -6151 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 817-10 chr12 79563028 79563368 + 4 NA Intergenic Intergenic 127382 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 1015-18 chr7 88950457 88950919 + 4 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -154951 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 592-39 chr12 112758575 112758854 + 4 NA intron (NM_001347952, intron 1 of 21) MIRb|SINE|MIR -32824 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 567-202 chr9 27714870 27715028 + 4 NA Intergenic MIRb|SINE|MIR -141083 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 396-290 chr5 112374403 112374526 + 4 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 44813 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 626-66 chr2 76712130 76712469 + 4 NA Intergenic Intergenic -273666 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 622-111 chr5 156076588 156076800 + 4 NA Intergenic Intergenic -250063 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 790-46 chr6 92660600 92660983 + 4 NA Intergenic Intergenic 758768 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 616-163 chr7 108866535 108866812 + 4 NA Intergenic MIR|SINE|MIR 17914 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 678-108 chr8 126417098 126417328 + 4 NA Intergenic Intergenic 91718 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 458-8 chr1 176706207 176706354 + 4 NA intron (NM_020318, intron 9 of 22) intron (NM_020318, intron 9 of 22) 243105 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 599-137 chr8 126622496 126622738 + 4 NA Intergenic Intergenic -64139 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 331-14 chr1 98000302 98000418 + 4 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 44991 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 697-55 chr4 14121052 14121388 + 4 NA intron (NR_033931, intron 1 of 2) MLT1H|LTR|ERVL-MaLR 9252 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 702-29 chr15 92505398 92505704 + 4 NA Intergenic (ATATTAT)n|Simple_repeat|Simple_repeat 33874 NR_161371 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 455-157 chr22 47173693 47174068 + 4 NA non-coding (NR_104292, exon 14 of 14) non-coding (NR_104292, exon 14 of 14) -171691 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 399-298 chr8 10472852 10472987 + 4 NA Intergenic L1MEg|LINE|L1 -1646 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 567-78 chr19 36719419 36719607 + 4 NA exon (NM_001300979, exon 6 of 6) exon (NM_001300979, exon 6 of 6) 15832 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 573-170 chr6 104542371 104542572 + 4 NA Intergenic Intergenic 317075 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 677-64 chr4 101917097 101917411 + 4 NA intron (NM_017935, intron 6 of 16) intron (NM_017935, intron 6 of 16) 103412 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 521-175 chr4 33872318 33872622 + 4 NA Intergenic Intergenic 167423 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 692-56 chr20 42120860 42121168 + 4 NA intron (NM_133170, intron 20 of 31) intron (NM_133170, intron 20 of 31) -502637 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 432-155 chr20 33400365 33400518 + 4 NA intron (NM_001365728, intron 1 of 14) MIRb|SINE|MIR 1078 NM_016408 51654 Hs.435952 NM_016082 ENSG00000101391 CDK5RAP1 C20orf34|C42|CGI-05|HSPC167 CDK5 regulatory subunit associated protein 1 protein-coding 1179-4 chr4 72126417 72127005 + 4 NA intron (NM_001144756, intron 2 of 4) MER68|LTR|ERVL 87579 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 673-16 chr10 55689930 55690278 + 4 NA Intergenic L1MA6|LINE|L1 -62162 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 1238-6 chr5 7740898 7741451 + 4 NA intron (NM_020546, intron 14 of 24) L1M5|LINE|L1 109959 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 610-60 chr16 13050512 13050764 + 4 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 149040 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 1208-15 chr4 57702953 57703468 + 4 NA Intergenic L1PA16|LINE|L1 277338 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 737-45 chr2 214290952 214291307 + 4 NA intron (NR_047660, intron 14 of 14) L1MA4A|LINE|L1 -119925 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 820-62 chr8 53367792 53368077 + 4 NA Intergenic Harlequin-int|LTR|ERV1 -116237 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 1608-6 chr9 97778067 97778748 + 4 NA intron (NR_147055, intron 5 of 10) HAL1|LINE|L1 74673 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 520-23 chr1 224091135 224091298 + 4 NA Intergenic L2|LINE|L2 -22895 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 1016-21 chr7 19655251 19655639 + 4 NA Intergenic HERV9-int|LTR|ERV1 49991 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 695-15 chr10 67164197 67164493 + 4 NA intron (NM_001127384, intron 7 of 17) L1MD2|LINE|L1 152079 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 759-28 chr18 14063013 14063319 + 4 NA Intergenic MIRb|SINE|MIR 69269 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 1522-4 chr4 33604565 33605417 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR 434902 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 594-54 chr16 76420219 76420464 + 4 NA intron (NR_136213, intron 3 of 23) L1MEg|LINE|L1 110489 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 596-132 chr5 84831800 84832117 + 4 NA Intergenic L1MC|LINE|L1 -447078 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 606-40 chr12 74384789 74385019 + 4 NA Intergenic L1MEc|LINE|L1 -92273 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 456-18 chr1 216125076 216125203 + 4 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 52674 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 585-35 chr13 102972217 102972425 + 4 NA Intergenic L1PB3|LINE|L1 92222 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 498-277 chr8 110792367 110792554 + 4 NA Intergenic MER21-int|LTR|ERVL 234973 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 785-13 chr10 84869567 84869927 + 4 NA Intergenic L1PA17|LINE|L1 329158 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 1652-2 chr12 42726344 42727163 + 4 NA Intergenic L2a|LINE|L2 34537 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 713-23 chr14 42783159 42783466 + 4 NA Intergenic L1M5|LINE|L1 1176456 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 645-46 chr17 77672315 77672543 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR 56130 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 721-47 chr20 53447081 53447367 + 4 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -105546 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 1037-16 chr8 50153956 50154368 + 4 NA intron (NR_135798, intron 1 of 15) L1PA5|LINE|L1 -9969 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 775-28 chr15 59429454 59429794 + 4 NA Intergenic Intergenic -8562 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 784-51 chr5 46298837 46299268 + 4 NA Intergenic ALR/Alpha|Satellite|centr -602672 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 624-71 chr2 191086784 191087044 + 4 NA intron (NM_003151, intron 3 of 23) HERV35I-int|LTR|ERV1 64080 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 583-130 chr5 5614508 5614762 + 4 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 191958 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 852-45 chr7 43912352 43912836 + 4 NA intron (NM_001290076, intron 1 of 6) L1M4c|LINE|L1 -5525 NM_001077663 55665 Hs.663312 NM_017920 ENSG00000106608 URGCP URG4 upregulator of cell proliferation protein-coding 454-333 chr9 70751844 70751999 + 4 NA intron (NM_001366143, intron 8 of 25) intron (NM_001366143, intron 8 of 25) 58163 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 581-71 chr19 51845714 51845995 + 4 NA intron (NR_163433, intron 6 of 11) L1MA8|LINE|L1 42082 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 1497-2 chr2 101969769 101970571 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR -13295 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 752-38 chr2 63634780 63635013 + 4 NA Intergenic L1MA9|LINE|L1 45745 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 548-241 chr8 126216538 126216688 + 4 NA Intergenic L1ME3F|LINE|L1 -108882 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 922-29 chr5 148055546 148056056 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR -8171 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 683-98 chr9 31913001 31913173 + 4 NA Intergenic Intergenic -471516 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 878-30 chr22 31436687 31436957 + 4 NA Intergenic Intergenic 37218 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 878-44 chr7 78170775 78171109 + 4 NA intron (NM_001301128, intron 13 of 20) intron (NM_001301128, intron 13 of 20) -176300 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 498-292 chrX 55824003 55824203 + 4 NA Intergenic L1MA2|LINE|L1 -84020 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 871-43 chr9 80491715 80492135 + 4 NA Intergenic Intergenic 516902 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 641-118 chr9 83663579 83663764 + 4 NA intron (NM_013438, intron 10 of 10) intron (NM_013438, intron 10 of 10) 40528 NR_046422 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 1049-17 chr7 3478079 3478496 + 4 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 177035 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 755-37 chr2 120192054 120192279 + 4 NA Intergenic L1M4c|LINE|L1 31234 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 594-105 chr4 105940844 105940993 + 4 NA intron (NM_001184692, intron 7 of 10) intron (NM_001184692, intron 7 of 10) 45447 NM_001184692 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 556-81 chr17 61064766 61065002 + 4 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 302820 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 824-23 chr2 161911757 161912083 + 4 NA intron (NM_001354443, intron 15 of 25) intron (NM_001354443, intron 15 of 25) 162295 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 516-153 chr20 59798750 59798984 + 4 NA intron (NM_080672, intron 7 of 12) L1MEc|LINE|L1 77657 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 511-97 chr18 55837242 55837575 + 4 NA Intergenic Intergenic -55683 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 551-138 chr4 100396260 100396633 + 4 NA 3' UTR (NM_016242, exon 12 of 12) 3' UTR (NM_016242, exon 12 of 12) -1199 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 918-11 chr17 55839063 55839424 + 4 NA Intergenic MIRb|SINE|MIR 88138 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 614-37 chr16 74074305 74074526 + 4 NA Intergenic Intergenic 141106 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 836-15 chr11 114868825 114869221 + 4 NA Intergenic Intergenic 190496 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 684-123 chr8 129765457 129765761 + 4 NA intron (NM_031415, intron 4 of 13) intron (NM_031415, intron 4 of 13) 21015 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 460-208 chr3 145355520 145355690 + 4 NA Intergenic HERVIP10B3-int|LTR|ERV1 713580 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 527-94 chr15 25448279 25448534 + 4 NA Intergenic Intergenic -9350 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 840-23 chr19 7087752 7088184 + 4 NA TTS (NM_001044387) TTS (NM_001044387) 18265 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 596-65 chr14 96903446 96903695 + 4 NA Intergenic Intergenic -40009 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 1015-8 chr19 57940505 57940823 + 4 NA TTS (NM_005773) TTS (NM_005773) -5262 NM_001317027 147686 Hs.660728 NM_133460 ENSG00000196724 ZNF418 - zinc finger protein 418 protein-coding 689-30 chr14 43219390 43219606 + 4 NA Intergenic Intergenic 1287785 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1144-4 chr10 83536730 83537327 + 4 NA Intergenic Intergenic 140061 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 632-98 chr5 115935284 115935530 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -21164 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 460-88 chr15 46421612 46421836 + 4 NA Intergenic L1M4a1|LINE|L1 716529 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 786-28 chr2 11514578 11514805 + 4 NA Intergenic Intergenic -19354 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 597-105 chr5 25409947 25410295 + 4 NA Intergenic Intergenic 219168 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 727-8 chr10 51013074 51013276 + 4 NA intron (NM_001098512, intron 1 of 17) MIR|SINE|MIR 22287 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 909-19 chr3 2648847 2649245 + 4 NA intron (NM_175607, intron 4 of 24) Tigger1|DNA|TcMar-Tigger -243169 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 1048-9 chr14 68776449 68776984 + 4 NA Intergenic MIRb|SINE|MIR 17198 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 739-68 chr8 99460415 99460736 + 4 NA intron (NM_017890, intron 23 of 61) L1PA4|LINE|L1 76155 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 441-95 chr17 38995959 38996097 + 4 NA Intergenic L1ME3E|LINE|L1 -28625 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 450-301 chr8 84094281 84094436 + 4 NA Intergenic L1MA4|LINE|L1 -88429 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1019-16 chr4 33433004 33433575 + 4 NA Intergenic Intergenic 606604 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 499-124 chr2 99270092 99270328 + 4 NA Intergenic Intergenic -15103 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 615-128 chr7 53374124 53374371 + 4 NA Intergenic L1MC3|LINE|L1 338614 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 835-47 chr6 12555433 12555818 + 4 NA Intergenic Intergenic 29779 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 576-68 chr18 1068329 1068592 + 4 NA Intergenic L1MEc|LINE|L1 -140467 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 514-74 chr13 90336079 90336333 + 4 NA Intergenic Intergenic 105024 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 892-43 chrX 105130642 105131001 + 4 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 89872 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 1345-2 chr2 65727480 65727889 + 4 NA Intergenic Intergenic -295085 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 668-82 chr5 76729053 76729375 + 4 NA intron (NM_001311313, intron 2 of 2) L1MA8|LINE|L1 13088 NM_001311313 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 514-89 chr14 65851580 65851819 + 4 NA Intergenic Intergenic 380597 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 1601 chr8 139535187 139536058 + 4 NA Intergenic Intergenic 167501 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 577-29 chr10 62017643 62017845 + 4 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -31613 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 575-206 chr8 136778288 136778475 + 4 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 247583 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 901-13 chr15 100410691 100411187 + 4 NA intron (NR_120374, intron 3 of 4) L1MB3|LINE|L1 38000 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 793-32 chr21 29129263 29129628 + 4 NA intron (NM_001371376, intron 1 of 3) L1MC2|LINE|L1 -1199 NM_001371373 968-26 chr7 54004752 54005285 + 4 NA Intergenic MER2B|DNA|TcMar-Tigger -193087 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 912-6 chr10 44426665 44427183 + 4 NA Intergenic Intergenic -41827 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 733-43 chr20 39308945 39309221 + 4 NA Intergenic MER5B|DNA|hAT-Charlie -84335 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 669-97 chr6 40812561 40812787 + 4 NA Intergenic Intergenic 210606 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 518-226 chr5 38718568 38718823 + 4 NA intron (NR_104631, intron 1 of 4) intron (NR_104631, intron 1 of 4) 1578 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 515-272 chr8 142008686 142008880 + 4 NA Intergenic Intergenic -167556 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 714-77 chr8 132197065 132197274 + 4 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -91904 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 491-281 chr9 113002272 113002451 + 4 NA intron (NM_001101338, intron 2 of 4) L1MC3|LINE|L1 9831 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 534-69 chr13 103051931 103052193 + 4 NA intron (NM_000452, intron 3 of 5) intron (NM_000452, intron 3 of 5) 14355 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 567-92 chr2 132506690 132506953 + 4 NA intron (NM_001508, intron 1 of 1) THE1C|LTR|ERVL-MaLR 73110 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 684-38 chr15 58272364 58272632 + 4 NA Intergenic L1MEg|LINE|L1 134117 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 584-39 chr14 19952516 19952717 + 4 NA Intergenic Intergenic 17008 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 774-43 chr2 79454719 79455043 + 4 NA Intergenic Intergenic 45963 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 535-123 chr2 56399102 56399309 + 4 NA Intergenic L1MC1|LINE|L1 -213435 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 671-106 chr8 141637209 141637492 + 4 NA Intergenic AluJo|SINE|Alu -130120 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 1231-8 chr8 138024119 138024656 + 4 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 59158 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 586-165 chr9 81336932 81337168 + 4 NA Intergenic L1MEi|LINE|L1 352485 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 930-12 chr15 70416777 70417333 + 4 NA Intergenic Intergenic 88873 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 648-103 chr4 94934726 94934950 + 4 NA intron (NM_001203, intron 2 of 12) (TTTTG)n|Simple_repeat|Simple_repeat -61394 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 843-46 chr9 89028549 89029046 + 4 NA intron (NM_016848, intron 11 of 11) (AT)n|Simple_repeat|Simple_repeat 37329 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 705-84 chr5 141370584 141370969 + 4 NA exon (NM_032097, exon 1 of 1) exon (NM_032097, exon 1 of 1) 534 NM_018924 56102 Hs.368160 NM_018924 ENSG00000262209 PCDHGB3 PCDH-GAMMA-B3 protocadherin gamma subfamily B, 3 protein-coding 472-301 chr7 47041419 47041641 + 4 NA Intergenic Intergenic -344408 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 854-11 chr12 45579676 45579904 + 4 NA Intergenic MER3|DNA|hAT-Charlie 148131 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 440-127 chr2 127688080 127688316 + 4 NA Intergenic L1M4b|LINE|L1 -6412 NM_001161404 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 982-5 chr10 29161284 29161748 + 4 NA Intergenic AluJr4|SINE|Alu -127554 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 794-52 chr9 102832706 102833006 + 4 NA Intergenic Intergenic -162477 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 1054-5 chr18 649794 650156 + 4 NA 3' UTR (NM_014410, exon 9 of 9) 3' UTR (NM_014410, exon 9 of 9) -7678 NM_001354867 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 450-334 chrX 137655668 137655832 + 4 NA Intergenic Intergenic 89623 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 650-5 chr1 228242330 228242514 + 4 NA intron (NM_052843, intron 9 of 80) L1MEd|LINE|L1 -28758 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 1096-19 chr7 141427314 141427796 + 4 NA intron (NM_001195278, intron 2 of 3) L1MA8|LINE|L1 -123855 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 602-124 chr7 16368353 16368616 + 4 NA intron (NM_001101417, intron 2 of 8) intron (NM_001101417, intron 2 of 8) 53054 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 732-43 chr2 29998707 29999031 + 4 NA Intergenic L1M4|LINE|L1 -77283 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 476-258 chr8 30050888 30051165 + 4 NA Intergenic Intergenic 32038 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 707-111 chr9 4219145 4219437 + 4 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -67108 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 768-11 chr11 128043138 128043447 + 4 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -165474 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 1099-13 chr2 51086599 51087305 + 4 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 54351 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 675-51 chr21 23821279 23821602 + 4 NA Intergenic L1MC3|LINE|L1 -436605 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 580-123 chr3 162634004 162634219 + 4 NA Intergenic Intergenic 669190 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 523-283 chr9 31572960 31573137 + 4 NA Intergenic Intergenic -191558 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 738-8 chr10 121373985 121374224 + 4 NA Intergenic L4_C_Mam|LINE|RTE-X 157210 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 640-84 chr3 121114906 121115228 + 4 NA intron (NR_145517, intron 6 of 8) intron (NR_145517, intron 6 of 8) 65427 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 348-544 chr8 140416098 140416257 + 4 NA intron (NM_001321646, intron 4 of 21) L1MB8|LINE|L1 41567 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 723-46 chr20 38124218 38124563 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 40880 NM_001323318 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 1795 chr8 144930985 144931720 + 4 NA exon (NM_001029976, exon 4 of 4) exon (NM_001029976, exon 4 of 4) 19528 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 314-591 chr8 136342678 136342767 + 4 NA Intergenic L1MA4|LINE|L1 -188076 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1195-11 chr3 183204133 183204577 + 4 NA intron (NM_015078, intron 25 of 29) L1MB7|LINE|L1 -41621 NM_014398 27074 Hs.518448 NM_014398 ENSG00000078081 LAMP3 CD208|DC LAMP|DC-LAMP|DCLAMP|LAMP|LAMP-3|TSC403 lysosomal associated membrane protein 3 protein-coding 685-71 chr4 57310899 57311202 + 4 NA Intergenic Intergenic -114822 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 594-24 chr11 37689888 37690047 + 4 NA Intergenic Intergenic -248634 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 638-98 chr3 191645236 191645508 + 4 NA Intergenic L1PA15|LINE|L1 184209 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 287-179 chr18 76528051 76528180 + 4 NA promoter-TSS (NR_015417) promoter-TSS (NR_015417) -540 NR_015417 284276 Hs.390287 NR_015417 ENSG00000266256 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 1187-9 chr9 27974765 27975346 + 4 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -401189 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1576-4 chr15 64580816 64581619 + 4 NA intron (NM_015042, intron 1 of 8) L1M4|LINE|L1 81797 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 1503-2 chr15 59960604 59961231 + 4 NA Intergenic L1M4c|LINE|L1 -43394 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 945-9 chr18 55757381 55757765 + 4 NA Intergenic MSTD|LTR|ERVL-MaLR 22848 NR_145453 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 409-86 chr14 97700039 97700209 + 4 NA Intergenic Intergenic -13466 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 378-390 chr7 13174791 13174903 + 4 NA Intergenic Intergenic 487214 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 933-24 chr22 49230378 49230815 + 4 NA Intergenic Intergenic 312870 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 674-28 chr14 59036050 59036240 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -152522 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 930-32 chr8 46786027 46786576 + 4 NA Intergenic L1PREC2|LINE|L1 -54585 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 336-545 chr8 98862507 98862610 + 4 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) -36870 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 506-106 chr16 78945396 78945646 + 4 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 655216 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 559-184 chr8 84496549 84496826 + 4 NA intron (NM_001354308, intron 2 of 9) (TATC)n|Simple_repeat|Simple_repeat 81203 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1008-21 chr8 85566234 85566592 + 4 NA Intergenic Intergenic 89263 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 545-112 chr2 79741391 79741677 + 4 NA intron (NM_001282598, intron 2 of 17) L1M5|LINE|L1 -92175 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 584-138 chr5 84414026 84414209 + 4 NA Intergenic Intergenic -29237 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 1301-3 chr8 129393515 129394171 + 4 NA intron (NR_130918, intron 1 of 2) MIRc|SINE|MIR 90299 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 2099 chr12 132922836 132923935 + 4 NA 3' UTR (NM_183238, exon 5 of 5) 3' UTR (NM_183238, exon 5 of 5) 32921 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 619-85 chr3 5386852 5387025 + 4 NA Intergenic Intergenic -136683 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 514-72 chr13 67273024 67273260 + 4 NA Intergenic Intergenic -42806 NM_001318374 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 904-31 chr4 86031455 86031901 + 4 NA intron (NM_001363657, intron 11 of 13) intron (NM_001363657, intron 11 of 13) -88128 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 1097-2 chr10 41765478 41765945 + 4 NA Intergenic ALR/Alpha|Satellite|centr 602334 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 602-109 chr5 112854816 112855095 + 4 NA Intergenic L1M4c|LINE|L1 -6233 NM_001204193 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 916-36 chr9 22579256 22579654 + 4 NA Intergenic L1PA15|LINE|L1 -66745 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 1586-3 chr19 36449536 36450428 + 4 NA exon (NM_001145343, exon 5 of 5) exon (NM_001145343, exon 5 of 5) 28808 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 795-52 chr7 108929597 108929929 + 4 NA Intergenic L1PA11|LINE|L1 -45176 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 1379-7 chr6 160576024 160576859 + 4 NA intron (NM_005577, intron 28 of 38) intron (NM_005577, intron 28 of 38) -65317 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 613-14 chr10 27728962 27729162 + 4 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -15553 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 713-9 chr1 222456250 222456501 + 4 NA Intergenic MIRb|SINE|MIR 91729 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 602-51 chr19 49382604 49382847 + 4 NA intron (NR_110729, intron 2 of 2) L1MEg|LINE|L1 5356 NR_110729 101928295 Hs.640180 NR_110729 ENSG00000268686 LOC101928295 - uncharacterized LOC101928295 ncRNA 660-29 chr14 71784227 71784447 + 4 NA Intergenic Intergenic -147834 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 344-433 chr6 121893190 121893325 + 4 NA Intergenic Intergenic 457611 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 713-68 chr5 68199939 68200184 + 4 NA Intergenic Intergenic 10185 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 706-7 chr10 65894223 65894542 + 4 NA Intergenic Intergenic 322957 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 1010-5 chr19 36549036 36549535 + 4 NA 5' UTR (NM_001352272, exon 6 of 7) 5' UTR (NM_001352272, exon 6 of 7) -21014 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 666-40 chr17 70966425 70966658 + 4 NA Intergenic L1ME1|LINE|L1 235638 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 858-38 chr5 123887610 123888041 + 4 NA Intergenic Charlie8|DNA|hAT-Charlie 342408 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 736-23 chr13 85593847 85594197 + 4 NA Intergenic Intergenic 205397 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 719-80 chr8 108984257 108984469 + 4 NA Intergenic L1PA7|LINE|L1 -102265 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 686-77 chr7 109239422 109239711 + 4 NA Intergenic L1MA9|LINE|L1 -354979 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 650-52 chr2 41800821 41801115 + 4 NA Intergenic L1MC2|LINE|L1 -76587 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 455-279 chr8 88339486 88339705 + 4 NA Intergenic Intergenic -12112 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 674-80 chr5 151937215 151937473 + 4 NA Intergenic L3|LINE|CR1 -12493 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 601-73 chr2 37707445 37707651 + 4 NA Intergenic L1ME3G|LINE|L1 -35013 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 643-21 chr12 5532308 5532625 + 4 NA Intergenic Intergenic 38334 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 1243-4 chr19 37386811 37387400 + 4 NA intron (NM_032453, intron 4 of 4) intron (NM_032453, intron 4 of 4) 16006 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 843-9 chr11 41873314 41873673 + 4 NA Intergenic Intergenic 158925 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 727-85 chr8 113861030 113861409 + 4 NA Intergenic L1M7|LINE|L1 -424280 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 678-11 chr10 100606143 100606359 + 4 NA Intergenic L1MEd|LINE|L1 70308 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 970-13 chr2 118156982 118157391 + 4 NA Intergenic L1MB1|LINE|L1 29200 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 650-18 chr12 27502636 27502920 + 4 NA TTS (NM_001145010) TTS (NM_001145010) -21428 NM_177444 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 1603 chr10 69623251 69623853 + 4 NA Intergenic L1MDa|LINE|L1 -6695 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 1148-8 chr4 93203521 93203883 + 4 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -625051 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 906-21 chr2 34998593 34999034 + 4 NA Intergenic Intergenic 321256 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 733-57 chr3 178276513 178276856 + 4 NA Intergenic Intergenic -142517 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 917-31 chr9 80424157 80424621 + 4 NA Intergenic Intergenic 449366 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 891-24 chr4 14999188 14999520 + 4 NA intron (NR_038857, intron 3 of 7) L2a|LINE|L2 2691 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-DT CPEB2-AS1 CPEB2 divergent transcript ncRNA 800-36 chr22 33230746 33231125 + 4 NA Intergenic Intergenic 122406 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 546-180 chr5 7276961 7277353 + 4 NA Intergenic (TTTTAA)n|Simple_repeat|Simple_repeat -7803 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 832-28 chr4 38638521 38638803 + 4 NA intron (NR_026804, intron 1 of 7) L1MEc|LINE|L1 -25537 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 1141-7 chr6 41261444 41261874 + 4 NA Intergenic L1M2|LINE|L1 12282 NR_002794 221438 Hs.639392 NR_002794 TREML5P TLT5|TREML2P|TREML2P1 triggering receptor expressed on myeloid cells like 5, pseudogene pseudo 560-138 chr5 45968954 45969211 + 4 NA Intergenic ALR/Alpha|Satellite|centr -272702 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 924-20 chr18 56464435 56464933 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR 173908 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 1098-9 chr8 137081146 137081651 + 4 NA Intergenic Intergenic 332190 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 707-13 chr10 43986913 43987166 + 4 NA Intergenic L2b|LINE|L2 74637 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 1077-7 chr19 56435793 56436261 + 4 NA Intergenic L1MCa|LINE|L1 31695 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 638-104 chr4 63203545 63203729 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -1041872 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 552-101 chr2 44030425 44030610 + 4 NA Intergenic Intergenic -34528 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 901-14 chr18 14927060 14927342 + 4 NA Intergenic L1MC4|LINE|L1 -19066 NR_104164 400644 Hs.514732 NR_104164 ENSG00000266554 LINC01443 - long intergenic non-protein coding RNA 1443 ncRNA 945-17 chr8 133631465 133631757 + 4 NA Intergenic Intergenic 52455 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 488-248 chr6 156202313 156202529 + 4 NA Intergenic L1MEf|LINE|L1 -176329 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 288-188 chr2 59821710 59821824 + 4 NA Intergenic Intergenic 561269 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 700-58 chr22 25578733 25578944 + 4 NA intron (NM_001362778, intron 1 of 19) MLT1D|LTR|ERVL-MaLR 14163 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 566-212 chr9 119565377 119565638 + 4 NA Intergenic L3|LINE|CR1 -196072 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 636-110 chr5 42318403 42318578 + 4 NA Intergenic Intergenic -104949 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 980-13 chr22 48328346 48328826 + 4 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 54222 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 690-47 chr16 48711323 48711543 + 4 NA Intergenic MIRb|SINE|MIR -101253 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 338-251 chr2 44889466 44889623 + 4 NA Intergenic Intergenic 49344 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 641-9 chr10 41829904 41830193 + 4 NA Intergenic ALR/Alpha|Satellite|centr 537997 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 531-241 chr8 103905449 103905646 + 4 NA intron (NM_001282881, intron 2 of 20) L1MD2|LINE|L1 86327 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 592-154 chr6 118611065 118611364 + 4 NA intron (NM_001042475, intron 2 of 12) L1MD1|LINE|L1 40377 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 961-25 chr8 139976262 139976670 + 4 NA intron (NM_001160372, intron 19 of 22) L1MC|LINE|L1 124069 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 455-77 chr15 58766056 58766240 + 4 NA Intergenic HAL1|LINE|L1 4826 NR_135474 101928725 Hs.572321 NR_135474 ENSG00000245975 LOC101928725 - uncharacterized LOC101928725 ncRNA 916-38 chr9 96840029 96840563 + 4 NA intron (NM_001346995, intron 2 of 3) L2b|LINE|L2 14218 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 284-260 chr3 53609535 53609657 + 4 NA intron (NM_001128840, intron 3 of 47) L1ME1|LINE|L1 114985 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 1182-10 chr20 30139990 30140692 + 4 NA Intergenic ALR/Alpha|Satellite|centr 146196 NR_145432 400841 Hs.516959 NM_207470 LINC01597 - long intergenic non-protein coding RNA 1597 ncRNA 1258-8 chr7 4293214 4293951 + 4 NA Intergenic L1ME2|LINE|L1 -158745 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 353-372 chr4 57304798 57304962 + 4 NA Intergenic L1PA16|LINE|L1 -120992 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 947-31 chr8 119299016 119299528 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR -25899 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 672-113 chr8 126313120 126313342 + 4 NA Intergenic Intergenic -12264 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 782-67 chr8 46051336 46051678 + 4 NA Intergenic ALR/Alpha|Satellite|centr 566136 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 772-19 chr14 62378322 62378618 + 4 NA Intergenic L1MD2|LINE|L1 -238497 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 709-88 chr8 75693649 75694070 + 4 NA Intergenic Intergenic 153891 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 1040-14 chr2 170912844 170913417 + 4 NA Intergenic Intergenic -15347 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 1045 chr1 210960727 210961193 + 4 NA intron (NM_002238, intron 6 of 10) L1ME1|LINE|L1 172414 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 380-179 chr2 63654246 63654385 + 4 NA Intergenic Intergenic 65164 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 526-12 chr1 218222962 218223194 + 4 NA Intergenic L1ME3G|LINE|L1 -62215 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 580-19 chr10 76938615 76938835 + 4 NA intron (NM_001271519, intron 23 of 28) intron (NM_001271519, intron 23 of 28) 50681 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 608-134 chr6 94442979 94443298 + 4 NA Intergenic Intergenic 724835 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 591-159 chr7 145344061 145344282 + 4 NA Intergenic Intergenic -508118 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 705-89 chr6 133196683 133196982 + 4 NA Intergenic Intergenic -44525 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 968-8 chr17 65022760 65023064 + 4 NA intron (NM_006572, intron 2 of 3) Cheshire|DNA|hAT-Charlie 32862 NM_001282425 10672 Hs.515018 NM_006572 ENSG00000120063 GNA13 G13 G protein subunit alpha 13 protein-coding 908-38 chr5 19665013 19665607 + 4 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 220962 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 912-32 chr3 159599924 159600335 + 4 NA intron (NM_001197108, intron 1 of 6) L1MA4A|LINE|L1 168483 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 1025-6 chr12 82205813 82206382 + 4 NA Intergenic HERVL-int|LTR|ERVL 152290 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 565-58 chr17 54538274 54538501 + 4 NA Intergenic L1MA2|LINE|L1 -362304 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 1298-5 chr6 76084205 76084641 + 4 NA Intergenic L1ME3C|LINE|L1 -11745 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 557-134 chr3 54800650 54800817 + 4 NA intron (NM_018398, intron 13 of 37) intron (NM_018398, intron 13 of 37) 100522 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 1530-4 chr4 64230920 64231473 + 4 NA Intergenic LTR25-int|LTR|ERV1 178254 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 688-78 chr3 112430981 112431182 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 68391 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 428-171 chr3 19616428 19616582 + 4 NA Intergenic MER44A|DNA|TcMar-Tigger -301574 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 429-120 chr17 63058112 63058297 + 4 NA intron (NM_025185, intron 2 of 25) L1PREC2|LINE|L1 91969 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 741-52 chr5 42220982 42221287 + 4 NA Intergenic L2|LINE|L2 -45789 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 792-13 chr12 17444754 17445159 + 4 NA Intergenic L1ME3Cz|LINE|L1 144122 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 397-331 chr8 51636491 51636643 + 4 NA intron (NM_144651, intron 2 of 22) L1MB4|LINE|L1 172878 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 876-5 chr10 39349466 39349810 + 4 NA Intergenic ALR/Alpha|Satellite|centr 653042 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 836-6 chr1 217200450 217200718 + 4 NA Intergenic L1ME2z|LINE|L1 -62882 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 1048-5 chr10 90137296 90137700 + 4 NA Intergenic HUERS-P3b-int|LTR|ERV1 -180125 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 626-75 chr2 146782364 146782583 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR 195416 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 758-28 chr15 67399724 67399975 + 4 NA intron (NM_001031715, intron 13 of 20) intron (NM_001031715, intron 13 of 20) 121124 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 1650 chr12 20295498 20296149 + 4 NA Intergenic L1PA15|LINE|L1 -73422 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 1036-21 chr5 110924958 110925287 + 4 NA Intergenic Intergenic -144958 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 1661 chr8 53624278 53625279 + 4 NA Intergenic L1MEi|LINE|L1 -100813 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 883-36 chr7 26264998 26265418 + 4 NA Intergenic Intergenic -26670 NM_001362753 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 671-51 chr2 226312985 226313326 + 4 NA Intergenic Intergenic 170361 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 997-14 chr2 148917960 148918464 + 4 NA intron (NM_004522, intron 1 of 25) intron (NM_004522, intron 1 of 25) -29663 NR_111932 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 818-16 chr12 37810409 37810789 + 4 NA Intergenic ALR/Alpha|Satellite|centr -506175 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 370-359 chr4 176778359 176778538 + 4 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 14474 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 823-29 chr7 42333269 42333612 + 4 NA Intergenic L1MB8|LINE|L1 -96231 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 664-127 chrX 83293951 83294188 + 4 NA Intergenic L1PREC2|LINE|L1 -214221 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 1348-10 chr8 133786544 133787302 + 4 NA Intergenic L2a|LINE|L2 -9571 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 736-73 chr6 50559846 50560059 + 4 NA Intergenic Intergenic -153592 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 505-149 chr2 79391113 79391349 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger 109613 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 490-183 chr3 100088290 100088438 + 4 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 26149 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 350-344 chr4 53126072 53126200 + 4 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 239925 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 657-63 chr3 60570257 60570625 + 4 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) 47429 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 656-37 chr12 109253355 109253584 + 4 NA intron (NM_001093, intron 43 of 52) MIRb|SINE|MIR 55815 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 1355-9 chr8 117390523 117391173 + 4 NA Intergenic L1MC4|LINE|L1 -129865 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 662-34 chr17 58905459 58905729 + 4 NA intron (NM_014906, intron 1 of 6) L1MCa|LINE|L1 149725 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 525-151 chr22 33450617 33450813 + 4 NA intron (NM_133642, intron 6 of 14) MIR3|SINE|MIR -14046 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 503-128 chr18 5179164 5179398 + 4 NA intron (NM_001330553, intron 1 of 1) L1PB4|LINE|L1 17976 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 612-151 chr9 80547969 80548233 + 4 NA Intergenic Intergenic 573078 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 733-53 chr3 83951946 83952355 + 4 NA Intergenic Intergenic 917425 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 919-12 chr20 15552592 15552969 + 4 NA intron (NM_001351663, intron 8 of 17) LTR16E1|LTR|ERVL 355940 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 723-52 chr4 84071502 84071696 + 4 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 227570 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 682-111 chr9 135919221 135919547 + 4 NA Intergenic L1MB3|LINE|L1 -11838 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 845-34 chr6 49338659 49339004 + 4 NA Intergenic L1MD|LINE|L1 124422 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 553-98 chr19 37540289 37540476 + 4 NA 3' UTR (NM_001013659, exon 8 of 8) 3' UTR (NM_001013659, exon 8 of 8) -8567 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 646-78 chr22 27553353 27553635 + 4 NA Intergenic AluJr|SINE|Alu 242843 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 592-107 chr3 18775906 18776153 + 4 NA Intergenic Intergenic -330437 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 677-35 chr16 13647542 13647957 + 4 NA Intergenic MIR|SINE|MIR -272408 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 878-51 chr8 113735950 113736433 + 4 NA Intergenic Intergenic -299252 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 521-109 chr18 73979493 73979720 + 4 NA Intergenic Intergenic 168228 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 444-83 chr16 26973841 26973963 + 4 NA Intergenic MER2|DNA|TcMar-Tigger -93025 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 998-20 chr8 126264249 126264633 + 4 NA Intergenic L1MEh|LINE|L1 -61054 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 603-54 chr14 84068887 84069087 + 4 NA Intergenic Intergenic -1202945 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 580-48 chr14 61778228 61778494 + 4 NA intron (NM_003082, intron 6 of 9) intron (NM_003082, intron 6 of 9) 15941 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 904-34 chr5 164920208 164920561 + 4 NA Intergenic L1M8|LINE|L1 450105 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 1296-8 chr7 29995655 29996379 + 4 NA Intergenic L1MEc|LINE|L1 -5728 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 715-38 chr2 75512337 75512646 + 4 NA intron (NM_032181, intron 3 of 3) L2c|LINE|L2 -11577 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 825-26 chr2 226076057 226076457 + 4 NA Intergenic Intergenic -66537 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 818-30 chr20 40087821 40088190 + 4 NA Intergenic Intergenic 83544 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 1385-4 chr2 21993287 21993928 + 4 NA Intergenic L2a|LINE|L2 -282955 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 430-287 chr7 52414440 52414663 + 4 NA Intergenic Intergenic -621082 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 531-147 chr3 2563355 2563632 + 4 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 324664 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 712-100 chr9 37874818 37875021 + 4 NA Intergenic L1ME2z|LINE|L1 29208 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 939-12 chr15 95783894 95784323 + 4 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat 343733 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 442-80 chr14 62923723 62923867 + 4 NA intron (NM_139318, intron 7 of 10) L1MA9|LINE|L1 121663 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 846 chr1 113540062 113540411 + 4 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 149721 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 777-73 chr8 136500375 136500651 + 4 NA Intergenic L1M5|LINE|L1 -30285 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 675-89 chr7 64938026 64938320 + 4 NA Intergenic L1MA9|LINE|L1 34931 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 1522-6 chrY 56831270 56831976 + 4 NA Intergenic Intergenic -122632 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 724-50 chr3 53429853 53430198 + 4 NA Intergenic Intergenic -64586 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 639-55 chr19 30981282 30981453 + 4 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -186143 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 772-10 chr11 55037410 55037762 + 4 NA Intergenic ALR/Alpha|Satellite|centr -224569 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 666-34 chr16 6505806 6506005 + 4 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -267904 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 375-147 chr15 87458111 87458294 + 4 NA Intergenic Intergenic -118727 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 1259-6 chr2 130946207 130946658 + 4 NA intron (NM_001367493, intron 3 of 13) intron (NM_001367493, intron 3 of 13) 109518 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 803-14 chr15 61727124 61727429 + 4 NA Intergenic Intergenic -2642 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 692-110 chr9 84217875 84218071 + 4 NA Intergenic Intergenic 122785 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 613-114 chr6 45784065 45784309 + 4 NA Intergenic Intergenic 153410 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 925-19 chr2 148105825 148106287 + 4 NA intron (NM_018328, intron 2 of 14) L1MEd|LINE|L1 -84452 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 578-62 chr14 82083834 82084095 + 4 NA Intergenic Intergenic -340826 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 796-51 chr7 31410370 31410681 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -69799 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 471-118 chr19 30166725 30166995 + 4 NA Intergenic Intergenic -205524 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 502-155 chr20 42002731 42002951 + 4 NA Intergenic Intergenic -384464 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 617-21 chr11 88439869 88440133 + 4 NA Intergenic L1MDb|LINE|L1 -64575 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 530-192 chr5 30774513 30774704 + 4 NA Intergenic Intergenic -419078 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 670-27 chr12 13614731 13614955 + 4 NA intron (NM_000834, intron 7 of 12) MIR3|SINE|MIR -238098 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 587-76 chr2 112338090 112338368 + 4 NA 3' UTR (NM_198581, exon 12 of 12) 3' UTR (NM_198581, exon 12 of 12) 62632 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 1276-5 chr7 4438399 4438898 + 4 NA Intergenic Intergenic -243647 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 920-18 chr20 45278066 45278487 + 4 NA Intergenic L1MC3|LINE|L1 -23712 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 535-17 chr1 110557451 110557767 + 4 NA Intergenic LTR16|LTR|ERVL -38434 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 1049-2 chr10 34062509 34063036 + 4 NA Intergenic L1MEg|LINE|L1 -290092 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 841-6 chr11 116125445 116125823 + 4 NA Intergenic Intergenic -365434 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 832-15 chr2 146293310 146293625 + 4 NA Intergenic L1MEc|LINE|L1 -293590 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 646-35 chr14 56076750 56077000 + 4 NA Intergenic Intergenic -41536 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 742-3 chr1 105928258 105928582 + 4 NA intron (NR_146609, intron 5 of 5) intron (NR_146609, intron 5 of 5) 99833 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 1181-10 chr22 34987271 34987825 + 4 NA intron (NR_138042, intron 1 of 4) L1MEg|LINE|L1 10368 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 596-48 chr12 56652992 56653306 + 4 NA Intergenic Intergenic -7165 NM_001686 506 Hs.406510 NM_001686 ENSG00000110955 ATP5F1B ATP5B|ATPMB|ATPSB|HEL-S-271 ATP synthase F1 subunit beta protein-coding 606-146 chr7 7281285 7281520 + 4 NA Intergenic Intergenic 26248 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 617-122 chr7 55033023 55033270 + 4 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 14114 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 520-21 chr1 200500451 200500742 + 4 NA Intergenic L4_B_Mam|LINE|RTE-X -90560 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 652-121 chr8 139566432 139566749 + 4 NA Intergenic Intergenic 136533 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 591-41 chr14 79476777 79476958 + 4 NA intron (NR_073547, intron 15 of 20) MIRb|SINE|MIR 197487 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 491-53 chr12 116488067 116488213 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -45282 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 479-267 chr8 139659918 139660078 + 4 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 43125 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 944-13 chr2 23101055 23101580 + 4 NA Intergenic L1PB4|LINE|L1 -283862 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 855-46 chr7 81560728 81561043 + 4 NA non-coding (NR_136264, exon 2 of 5) non-coding (NR_136264, exon 2 of 5) 934 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 524-205 chr5 106970437 106970704 + 4 NA intron (NR_104671, intron 1 of 3) intron (NR_104671, intron 1 of 3) 40444 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 780-61 chr7 109173276 109173642 + 4 NA Intergenic L1ME2z|LINE|L1 -288872 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 891-4 chr11 81613872 81614321 + 4 NA Intergenic L1MA5|LINE|L1 276740 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 470-295 chrX 66319025 66319199 + 4 NA Intergenic L1MA2|LINE|L1 151362 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 672-110 chr8 101665082 101665348 + 4 NA intron (NM_024915, intron 15 of 15) MIR|SINE|MIR 125754 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 731-36 chr19 29344203 29344497 + 4 NA intron (NR_040029, intron 9 of 9) L1MB3|LINE|L1 -131199 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 540-178 chr5 133573367 133573548 + 4 NA intron (NM_015082, intron 2 of 15) L1ME3A|LINE|L1 39084 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 928-16 chr2 81817682 81818125 + 4 NA Intergenic Intergenic -350957 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1767 chr12 118682387 118683149 + 4 NA Intergenic L2c|LINE|L2 78911 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 951-11 chr19 36445084 36445467 + 4 NA 3' UTR (NM_001145343, exon 5 of 5) 3' UTR (NM_001145343, exon 5 of 5) 24101 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 904-47 chr8 137871331 137871738 + 4 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 212011 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 1383 chr1 210866384 210866870 + 4 NA intron (NM_002238, intron 7 of 10) L1MB8|LINE|L1 266747 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 898-14 chr17 33491489 33491905 + 4 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 42063 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 595-14 chr10 33525813 33526125 + 4 NA Intergenic L1MC4|LINE|L1 -191064 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 428-236 chr5 87670685 87670817 + 4 NA intron (NR_149089, intron 1 of 1) intron (NR_149089, intron 1 of 1) 8709 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 417-298 chr9 1727391 1727514 + 4 NA Intergenic Intergenic -287895 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 593-67 chr19 32116799 32116996 + 4 NA Intergenic L1ME4c|LINE|L1 -10981 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 654-43 chr16 13336820 13337025 + 4 NA Intergenic Intergenic 435324 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 634-145 chr7 71255037 71255304 + 4 NA intron (NM_022479, intron 1 of 10) THE1B|LTR|ERVL-MaLR -52504 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 689-47 chr2 80131242 80131593 + 4 NA intron (NM_001282598, intron 7 of 17) L1MD3|LINE|L1 173335 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 460-82 chr14 53706827 53707031 + 4 NA Intergenic L3|LINE|CR1 241555 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 794-21 chr18 1142667 1143017 + 4 NA Intergenic Intergenic -214849 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 673-31 chr13 59502351 59502720 + 4 NA Intergenic L1MC4a|LINE|L1 -510183 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 1300-5 chr5 99779583 99780163 + 4 NA Intergenic (TTTTGTT)n|Simple_repeat|Simple_repeat 245883 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 558-164 chr4 161404445 161404774 + 4 NA intron (NM_001128428, intron 14 of 14) L1M4|LINE|L1 -618124 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 1010-15 chr9 103975314 103975634 + 4 NA Intergenic L2c|LINE|L2 -24235 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 757-9 chr11 86363105 86363356 + 4 NA Intergenic L1ME3|LINE|L1 -11506 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 462-114 chr18 13968404 13968625 + 4 NA Intergenic L1MB8|LINE|L1 -52807 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 582-78 chr2 139423844 139424085 + 4 NA Intergenic MER5A|DNA|hAT-Charlie 526640 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 788-11 chr11 98167221 98167557 + 4 NA Intergenic L1PA15-16|LINE|L1 -853560 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 545-174 chr5 8343343 8343593 + 4 NA intron (NR_039984, intron 3 of 5) L1PA16|LINE|L1 114096 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 698-4 chr1 50284472 50284667 + 4 NA Intergenic Intergenic 138874 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 720-75 chr5 180279660 180279919 + 4 NA intron (NM_001364608, intron 3 of 12) intron (NM_001364608, intron 3 of 12) 819 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 784-12 chr10 109611335 109611625 + 4 NA Intergenic MER65C|LTR|ERV1 311766 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 568-81 chr17 63296711 63296954 + 4 NA intron (NM_025185, intron 8 of 25) L1MB5|LINE|L1 143435 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 847-33 chr4 42163636 42164101 + 4 NA Intergenic MER5B|DNA|hAT-Charlie -11213 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 884-28 chr22 42055904 42056245 + 4 NA Intergenic L1MB7|LINE|L1 14738 NM_000262 4668 Hs.75372 NM_000262 ENSG00000198951 NAGA D22S674|GALB alpha-N-acetylgalactosaminidase protein-coding 553-204 chr6 18813633 18813855 + 4 NA Intergenic Intergenic 241960 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 419-113 chr17 34663130 34663327 + 4 NA Intergenic (CACCAC)n|Simple_repeat|Simple_repeat 82479 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 656-13 chr1 235737264 235737467 + 4 NA intron (NM_000081, intron 31 of 52) L1MC5a|LINE|L1 -86611 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 701-2 chr1 214763029 214763282 + 4 NA Intergenic L1PA13|LINE|L1 159960 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 994-18 chrX 93329601 93330014 + 4 NA Intergenic L2c|LINE|L2 343771 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 719-35 chr19 28953171 28953461 + 4 NA Intergenic Intergenic -11815 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 775-52 chr20 46461895 46462158 + 4 NA Intergenic LTR46|LTR|ERV1 3266 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 315-430 chr6 162043642 162043805 + 4 NA intron (NM_013988, intron 2 of 8) intron (NM_013988, intron 2 of 8) 572746 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 637-12 chr10 8786436 8786729 + 4 NA Intergenic L1MEd|LINE|L1 -111407 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 775-83 chr8 122553741 122554080 + 4 NA intron (NR_131202, intron 2 of 3) L2c|LINE|L2 14734 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1011-12 chr20 60348678 60349236 + 4 NA Intergenic Intergenic 40483 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 714-11 chr10 104095573 104095833 + 4 NA Intergenic L1ME1|LINE|L1 -9823 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 789-18 chr14 53078825 53079079 + 4 NA intron (NM_030637, intron 4 of 11) L1MB7|LINE|L1 74371 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 742-64 chr5 26711107 26711440 + 4 NA Intergenic L1M5|LINE|L1 327313 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1036-7 chr12 34547104 34547755 + 4 NA Intergenic ALR/Alpha|Satellite|centr 524933 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 806-32 chr2 217058357 217058641 + 4 NA Intergenic Intergenic 187727 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 954-22 chr19 53141976 53142370 + 4 NA exon (NM_001172674, exon 5 of 5) exon (NM_001172674, exon 5 of 5) -9253 NM_001352131 55786 Hs.147765 NM_018355 ENSG00000170954 ZNF415 Pact|ZfLp zinc finger protein 415 protein-coding 1241-7 chr3 159023084 159023432 + 4 NA Intergenic L1PA16|LINE|L1 -45994 NM_001197113 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 832-34 chr5 28267685 28267954 + 4 NA Intergenic L1MEc|LINE|L1 19846 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 684-50 chr19 37397726 37398015 + 4 NA Intergenic MLT1A1|LTR|ERVL-MaLR 26771 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 752-11 chr11 108786854 108787078 + 4 NA intron (NM_004398, intron 13 of 17) L1PA16|LINE|L1 121897 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 1678 chr2 117042725 117043465 + 4 NA Intergenic (TATACTA)n|Simple_repeat|Simple_repeat -771596 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 733-13 chr11 124320375 124320592 + 4 NA promoter-TSS (NM_001002918) promoter-TSS (NM_001002918) -286 NM_001002918 283160 Hs.504212 NM_001002918 ENSG00000279116 OR8D2 JCG2 olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) protein-coding 767-12 chr13 55414640 55415059 + 4 NA Intergenic Intergenic 240395 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 987-6 chr2 134510054 134510446 + 4 NA intron (NM_030923, intron 4 of 7) MER113A|DNA|hAT-Charlie 208750 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 384-188 chr2 185556090 185556243 + 4 NA Intergenic Intergenic 182553 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 1144-8 chr4 29965951 29966286 + 4 NA Intergenic L2a|LINE|L2 751826 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 1034-21 chr9 37193429 37193929 + 4 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 73081 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 609-7 chr10 25022778 25023002 + 4 NA intron (NM_024838, intron 2 of 2) intron (NM_024838, intron 2 of 2) 6278 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 1026-17 chr3 111747022 111747454 + 4 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 14742 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 503-289 chr8 126188843 126189093 + 4 NA Intergenic L3|LINE|CR1 -136527 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 785-44 chr5 15540415 15540633 + 4 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 39086 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 838-33 chr8 8433555 8433992 + 4 NA Intergenic Intergenic -47334 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 624-88 chr4 64227239 64227421 + 4 NA Intergenic Intergenic 182120 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 580-49 chr14 89599689 89599911 + 4 NA intron (NM_001085471, intron 1 of 6) L1MEg|LINE|L1 19365 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 537-4 chr1 63139407 63139634 + 4 NA Intergenic Intergenic -127049 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 1204-8 chr5 95622702 95623209 + 4 NA TTS (NM_199243) TTS (NM_199243) 2868 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 692-106 chr8 141859546 141859868 + 4 NA Intergenic Intergenic -73394 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 1324-5 chr5 141105939 141106567 + 4 NA Intergenic Intergenic 6011 NM_018937 56132 Hs.508987 NM_018937 ENSG00000113205 PCDHB3 PCDH-BETA3 protocadherin beta 3 protein-coding 857-28 chr2 107474784 107475328 + 4 NA Intergenic L1M4|LINE|L1 -54363 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 740-34 chr17 69659850 69660188 + 4 NA intron (NR_109972, intron 3 of 4) LTR31|LTR|ERV1 66032 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 923-7 chr14 70436145 70436562 + 4 NA Intergenic HERVL-int|LTR|ERVL -15821 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 500-172 chr21 21489711 21489900 + 4 NA intron (NM_001352592, intron 16 of 18) intron (NM_001352592, intron 16 of 18) 247514 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 684-60 chr2 139882704 139883157 + 4 NA Intergenic L1ME3G|LINE|L1 703755 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 516-112 chr19 37408668 37408921 + 4 NA Intergenic L1MD2|LINE|L1 37695 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 1036-22 chr5 155184060 155184406 + 4 NA Intergenic Intergenic 170478 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 339-382 chr3 145068011 145068127 + 4 NA Intergenic Intergenic 1001116 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 574-134 chr5 8300110 8300355 + 4 NA Intergenic MER20B|DNA|hAT-Charlie 157332 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 659-85 chr4 149550785 149551024 + 4 NA intron (NM_001363507, intron 11 of 13) intron (NM_001363507, intron 11 of 13) 264939 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 595-159 chr8 69065354 69065520 + 4 NA intron (NR_039986, intron 2 of 4) L1MEg|LINE|L1 38753 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 1268-6 chr18 80021695 80022324 + 4 NA intron (NM_001305564, intron 1 of 2) LTR25-int|LTR|ERV1 11927 NM_001305564 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 581-159 chr7 78871695 78871933 + 4 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -137174 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 557-214 chr9 24028394 24028639 + 4 NA Intergenic Intergenic -177915 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 815-43 chr8 108323660 108323977 + 4 NA Intergenic Intergenic -75101 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 1301 chr3 10825658 10826130 + 4 NA 3' UTR (NM_001317406, exon 4 of 4) 3' UTR (NM_001317406, exon 4 of 4) 9666 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 364-349 chr5 68069420 68069608 + 4 NA Intergenic Intergenic -120362 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 722-79 chr8 99197821 99198098 + 4 NA intron (NM_017890, intron 17 of 61) MADE1|DNA|TcMar-Mariner 184693 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 344-367 chr4 134986395 134986507 + 4 NA Intergenic Intergenic 137108 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 605-126 chr9 24092621 24092826 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR -242122 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 658-28 chr11 50528356 50528670 + 4 NA Intergenic ALR/Alpha|Satellite|centr 119366 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 358-339 chr4 97735204 97735330 + 4 NA intron (NM_174952, intron 9 of 10) (AT)n|Simple_repeat|Simple_repeat 368341 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 846-36 chr4 59459452 59459712 + 4 NA Intergenic MER61B|LTR|ERV1 446009 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 727-39 chr16 82350435 82350751 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR -180369 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 705-101 chr8 77282632 77282998 + 4 NA Intergenic MLT2B4|LTR|ERVL -167882 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 1009-5 chr14 78371583 78371963 + 4 NA intron (NR_073547, intron 4 of 20) LTR1F2|LTR|ERV1 -31946 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 637-57 chr2 13130636 13130933 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -123771 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 672-61 chr2 146404864 146405174 + 4 NA Intergenic MIR|SINE|MIR -182038 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 651-55 chr19 33593802 33594039 + 4 NA Intergenic L1M4|LINE|L1 -28033 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 588-99 chr3 94471095 94471344 + 4 NA Intergenic HUERS-P2-int|LTR|ERV1 408158 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 828-54 chr9 90063334 90063714 + 4 NA Intergenic Intergenic -22025 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 652-37 chr14 64076363 64076640 + 4 NA intron (NM_015180, intron 54 of 114) intron (NM_015180, intron 54 of 114) 18624 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 799-25 chr2 15995067 15995388 + 4 NA Intergenic Intergenic -52794 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 678-101 chr8 76357504 76357827 + 4 NA Intergenic Helitron1Nb_Mam|RC|Helitron -48989 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 895-27 chr3 35836665 35837008 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 92360 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 1087-22 chr9 12103148 12103522 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -590050 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 750-6 chr1 227707908 227708138 + 4 NA Intergenic Intergenic -10316 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 646-115 chr7 24303593 24303865 + 4 NA Intergenic L1MA5A|LINE|L1 19539 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 574-55 chr17 61599841 61600068 + 4 NA Intergenic Intergenic -8735 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 602-110 chr5 131245968 131246135 + 4 NA Intergenic L1M7|LINE|L1 -17958 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 559-41 chr13 40179567 40179771 + 4 NA Intergenic Intergenic -2140 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 423 chr1 23362081 23362293 + 4 NA exon (NM_001077195, exon 4 of 4) exon (NM_001077195, exon 4 of 4) 6199 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 645-133 chr8 139764421 139764634 + 4 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -61404 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1029-20 chr8 138399430 138399931 + 4 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 97581 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 814-8 chr10 109335675 109336082 + 4 NA Intergenic L1MEf|LINE|L1 587368 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 674-77 chr5 37143170 37143407 + 4 NA intron (NM_023073, intron 42 of 51) L1MEd|LINE|L1 -105758 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 658-44 chr14 85109281 85109599 + 4 NA Intergenic Intergenic -162492 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 680-90 chr4 99009662 99009973 + 4 NA intron (NM_015143, intron 1 of 10) L1MB2|LINE|L1 12430 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 768-24 chr16 65688222 65688426 + 4 NA Intergenic Intergenic -112024 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 678-10 chr10 53811251 53811696 + 4 NA intron (NM_001142772, intron 32 of 33) (TAA)n|Simple_repeat|Simple_repeat -674757 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 634-29 chr11 42862484 42862754 + 4 NA Intergenic L1ME2|LINE|L1 406750 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 424-57 chr12 114694568 114694752 + 4 NA Intergenic Intergenic -10485 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 667-42 chr19 8802545 8802841 + 4 NA Intergenic AluJb|SINE|Alu 19370 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 599-25 chr11 94660689 94660979 + 4 NA intron (NR_135096, intron 4 of 6) intron (NR_135096, intron 4 of 6) 79521 NR_135094 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 684-14 chr10 47225891 47226161 + 4 NA Intergenic Intergenic -74171 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 791-64 chr7 48379512 48379864 + 4 NA intron (NM_152701, intron 35 of 61) intron (NM_152701, intron 35 of 61) 208230 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 1109-6 chr2 152842171 152842633 + 4 NA Intergenic L1M3|LINE|L1 123765 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 994-14 chr5 156625008 156625426 + 4 NA intron (NM_001128209, intron 5 of 7) Charlie4a|DNA|hAT-Charlie -225078 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 1019-3 chr1 236093593 236094126 + 4 NA Intergenic L1ME1|LINE|L1 -28769 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 680-102 chr6 40043691 40043935 + 4 NA Intergenic L1PA10|LINE|L1 -109351 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 973 chr1 94574697 94575084 + 4 NA Intergenic L1PA11|LINE|L1 31188 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 842-52 chr8 71451237 71451719 + 4 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -89409 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 660-71 chr4 54777307 54777671 + 4 NA Intergenic MIRb|SINE|MIR 119561 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 733-35 chr2 63181114 63181508 + 4 NA intron (NR_148705, intron 13 of 16) L1PB4|LINE|L1 -61769 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 332-429 chr5 125483722 125483824 + 4 NA Intergenic Intergenic -9488 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 969-22 chr8 113086678 113087110 + 4 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 290258 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 768-45 chr7 7949717 7950061 + 4 NA TTS (NR_110018) TTS (NR_110018) 18863 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 585-136 chr6 46694596 46694888 + 4 NA intron (NM_001010870, intron 1 of 3) intron (NM_001010870, intron 1 of 3) -6577 NR_134643 101926934 Hs.664979 NR_134642 ENSG00000242973 LOC101926934 - uncharacterized LOC101926934 ncRNA 500-8 chr1 98563090 98563297 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR -98528 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 745-47 chr4 60274768 60275063 + 4 NA Intergenic L1MA9|LINE|L1 -647704 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 1443-3 chr21 26895753 26896379 + 4 NA Intergenic L1ME2z|LINE|L1 -50657 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 548-201 chr6 155584072 155584353 + 4 NA Intergenic MER89|LTR|ERV1 69368 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 586-138 chr7 7476731 7476980 + 4 NA intron (NM_001037763, intron 14 of 34) intron (NM_001037763, intron 14 of 34) 59018 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 846-15 chr15 25073644 25074129 + 4 NA promoter-TSS (NR_003325) promoter-TSS (NR_003325) -227 NR_003325 100033422 NR_003325 ENSG00000200661 SNORD116-10 HBII-85-10 small nucleolar RNA, C/D box 116-10 snoRNA 699-80 chr5 39930563 39930986 + 4 NA Intergenic Intergenic -121517 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 520-65 chr12 20313916 20314066 + 4 NA Intergenic Intergenic -55254 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 716-14 chr10 75442755 75442995 + 4 NA intron (NM_001305581, intron 2 of 6) L1M3|LINE|L1 11251 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 1181-6 chr12 8862640 8863077 + 4 NA intron (NM_001282424, intron 17 of 24) Helitron1Nb_Mam|RC|Helitron 17854 NM_001282424 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 505-246 chr5 88375127 88375339 + 4 NA intron (NR_105019, intron 6 of 7) HAL1|LINE|L1 -16962 NR_105020 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 617-75 chr20 42823376 42823655 + 4 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) 138032 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 516-100 chr16 86084076 86084212 + 4 NA Intergenic Intergenic -112037 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 586-156 chr8 120658231 120658435 + 4 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -102920 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 1370 chr1 229898955 229899541 + 4 NA Intergenic L1M5|LINE|L1 -5340 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 514-208 chr4 104381342 104381526 + 4 NA Intergenic HAL1|LINE|L1 -109531 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 607-40 chr14 57822163 57822410 + 4 NA intron (NM_001352012, intron 1 of 8) LTR86B1|LTR|ERVL 42713 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 593-64 chr18 37195891 37196050 + 4 NA intron (NR_136303, intron 10 of 13) L1MA4|LINE|L1 -78490 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 1593 chr4 83701959 83702610 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 166176 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 688-81 chr4 28618598 28618891 + 4 NA Intergenic Intergenic -200838 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 368-486 chr9 92842125 92842324 + 4 NA Intergenic Intergenic 32613 NR_026868 138649 Hs.643597 NM_001010925 ENSG00000187984 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 537-117 chr2 99667202 99667384 + 4 NA intron (NM_001025108, intron 11 of 23) L1MDa|LINE|L1 -177276 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 585-14 chr10 43761173 43761382 + 4 NA Intergenic L1M8|LINE|L1 17548 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 576-130 chr5 20620118 20620307 + 4 NA intron (NR_149120, intron 1 of 11) intron (NR_149120, intron 1 of 11) -4677 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 426-8 chr1 76926810 76926939 + 4 NA intron (NM_001320274, intron 2 of 2) L1ME4a|LINE|L1 59394 NM_030965 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 850-9 chr11 133609129 133609507 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR -76817 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 902-12 chr13 90111100 90111349 + 4 NA intron (NR_047489, intron 1 of 5) L1M4|LINE|L1 8493 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 812-4 chr1 99150320 99150706 + 4 NA Intergenic L2a|LINE|L2 -113779 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 678-93 chr5 153720910 153721172 + 4 NA intron (NM_000827, intron 11 of 15) intron (NM_000827, intron 11 of 15) 177946 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 667-101 chr7 4413777 4414032 + 4 NA Intergenic Intergenic -268391 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 621-19 chr11 8051364 8051668 + 4 NA intron (NM_003320, intron 2 of 12) L1ME4a|LINE|L1 -8522 NR_120537 101927917 Hs.680586 NR_120537 ENSG00000248332 TUB-AS1 - TUB antisense RNA 1 ncRNA 693-31 chr14 80398513 80398728 + 4 NA intron (NR_038355, intron 7 of 8) intron (NR_038355, intron 7 of 8) -167563 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 513-116 chr19 34603887 34604157 + 4 NA intron (NR_027620, intron 1 of 3) L1ME3B|LINE|L1 -9437 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 670-33 chr13 47517146 47517384 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR 415357 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 842-55 chr8 116993875 116994111 + 4 NA intron (NM_001172811, intron 2 of 9) L1ME3A|LINE|L1 43018 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 776-36 chr4 34082506 34082928 + 4 NA Intergenic Intergenic -42824 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 763-6 chr10 32598965 32599317 + 4 NA intron (NM_001321115, intron 19 of 43) L1M4c|LINE|L1 153001 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 855-5 chr10 76495353 76495822 + 4 NA intron (NM_001305581, intron 6 of 6) L1MD|LINE|L1 -392457 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 728-30 chr14 47832621 47832878 + 4 NA Intergenic Intergenic -37735 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 579-166 chr8 78167933 78168187 + 4 NA Intergenic L1MB3|LINE|L1 -348280 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 500-16 chr1 211594643 211594895 + 4 NA Intergenic AluYj4|SINE|Alu -15608 NM_021194 7779 Hs.519469 NM_021194 ENSG00000170385 SLC30A1 ZNT1|ZRC1 solute carrier family 30 member 1 protein-coding 800 chr1 62966570 62966933 + 4 NA Intergenic Intergenic 44174 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 656-100 chr5 169418207 169418431 + 4 NA Intergenic Intergenic -117180 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 627-56 chr2 106713680 106713841 + 4 NA Intergenic L1MB2|LINE|L1 172268 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 727-3 chr1 73485049 73485429 + 4 NA Intergenic AluJo|SINE|Alu 179069 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 868 chr10 43519931 43520255 + 4 NA Intergenic Intergenic 48366 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 624-68 chr2 114237195 114237479 + 4 NA Intergenic Intergenic -205304 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 820-19 chr16 73127540 73127946 + 4 NA intron (NM_207385, intron 3 of 3) intron (NM_207385, intron 3 of 3) 16704 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 1467-8 chr6 133771975 133772513 + 4 NA intron (NR_109982, intron 2 of 8) intron (NR_109982, intron 2 of 8) -48903 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 348-16 chr1 107607697 107607828 + 4 NA intron (NM_006113, intron 22 of 26) intron (NM_006113, intron 22 of 26) 80737 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 631-74 chr2 225951754 225952064 + 4 NA Intergenic L1M2|LINE|L1 -190885 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 545-147 chr3 118356973 118357234 + 4 NA Intergenic L1M1|LINE|L1 -284665 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 861-20 chr3 41191417 41191982 + 4 NA Intergenic MIR|SINE|MIR -7806 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 1063-3 chr1 222330698 222331246 + 4 NA Intergenic Intergenic 217132 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 826-43 chr3 89809810 89810162 + 4 NA Intergenic Intergenic 702365 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 671-94 chr7 88281364 88281571 + 4 NA intron (NM_001205316, intron 2 of 3) intron (NM_001205316, intron 2 of 3) 25427 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 747-59 chr6 168693799 168694046 + 4 NA Intergenic L1MEi|LINE|L1 252738 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 948-18 chr19 57113988 57114408 + 4 NA Intergenic L1MA9|LINE|L1 -5943 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 1051-6 chr18 1910510 1910863 + 4 NA Intergenic MamGypLTR1a|LTR|Gypsy -551057 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 410-202 chr3 145563154 145563265 + 4 NA Intergenic L1MA9|LINE|L1 505976 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 500-28 chr10 58430595 58430767 + 4 NA Intergenic L1MC5a|LINE|L1 45271 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 624-35 chr14 45425809 45426100 + 4 NA Intergenic L1M2|LINE|L1 -172752 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 820-20 chr16 76184490 76184912 + 4 NA Intergenic Intergenic -92700 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 594-63 chr2 5893872 5894122 + 4 NA Intergenic Intergenic -38690 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 814 chr1 81667683 81668017 + 4 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -31920 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 1047-2 chr11 50659947 50660385 + 4 NA Intergenic ALR/Alpha|Satellite|centr 251019 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 611-88 chr2 226674575 226674789 + 4 NA Intergenic Intergenic -15889 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 242-301 chr5 52074333 52074488 + 4 NA Intergenic Intergenic 66379 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 686-75 chr7 49848755 49849151 + 4 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 73620 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 583-29 chr11 50432383 50432668 + 4 NA Intergenic ALR/Alpha|Satellite|centr 23378 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1031-2 chr11 87339697 87340059 + 4 NA Intergenic L1MEg|LINE|L1 301944 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 620-146 chr8 101807569 101807781 + 4 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -16706 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 965-24 chr8 116908208 116908505 + 4 NA Intergenic Intergenic -29851 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 318-522 chr7 94330416 94330530 + 4 NA Intergenic Intergenic 61719 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 616-51 chr15 91439838 91440224 + 4 NA Intergenic L1PB1|LINE|L1 -23308 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 675-45 chr2 154498536 154498844 + 4 NA Intergenic L1ME1|LINE|L1 -41252 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 444-258 chr8 83334835 83335022 + 4 NA Intergenic (ATATCT)n|Simple_repeat|Simple_repeat -68830 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 1192-5 chr2 114510729 114511252 + 4 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 49413 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 996-26 chr8 137443463 137443831 + 4 NA Intergenic MIRb|SINE|MIR -30059 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 579-79 chr2 215667498 215667755 + 4 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -50417 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 631-78 chr20 57457553 57457843 + 4 NA Intergenic Intergenic -64642 NR_149006 100291105 Hs.638423 NR_149006 ENSG00000218018 LOC100291105 - uncharacterized LOC100291105 ncRNA 450-275 chr7 22050357 22050534 + 4 NA Intergenic Intergenic -104546 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 1200 chr10 66008170 66008710 + 4 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 437015 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 646-138 chr9 95696171 95696430 + 4 NA Intergenic Intergenic -179243 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 596-58 chr14 30342415 30342691 + 4 NA Intergenic L1PA16|LINE|L1 -216570 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 943-17 chr20 57104884 57105278 + 4 NA Intergenic Intergenic -108615 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 912-44 chr8 104335212 104335622 + 4 NA Intergenic L1MC1|LINE|L1 -4379 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 1079-12 chr8 103928142 103928536 + 4 NA intron (NM_001348507, intron 9 of 21) intron (NM_001348507, intron 9 of 21) 109119 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 568-47 chr14 44479905 44480237 + 4 NA Intergenic Intergenic 27212 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1508-3 chr21 30883747 30884447 + 4 NA Intergenic Intergenic -2517 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 667-77 chr4 61325391 61325738 + 4 NA intron (NM_001371342, intron 1 of 20) L2a|LINE|L2 123392 NM_001371342 754-14 chr12 52775282 52775637 + 4 NA exon (NM_015848, exon 2 of 9) exon (NM_015848, exon 2 of 9) 1886 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 1123 chr1 44143058 44143554 + 4 NA Intergenic Intergenic -1675 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 534-129 chr2 137392912 137393100 + 4 NA intron (NM_001316349, intron 12 of 27) L1MA4A|LINE|L1 534926 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 950-28 chr8 51479755 51480259 + 4 NA intron (NM_144651, intron 6 of 22) intron (NM_144651, intron 6 of 22) 329438 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 680-68 chr2 160091032 160091358 + 4 NA Intergenic Intergenic -28580 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 616-10 chr1 225108800 225108983 + 4 NA intron (NM_001367479, intron 23 of 85) L1M1|LINE|L1 179216 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 981-7 chr14 45512954 45513517 + 4 NA Intergenic L1MA2|LINE|L1 202367 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 406-98 chr15 57243840 57244011 + 4 NA intron (NM_207038, intron 13 of 19) AluJo|SINE|Alu 24495 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 590-83 chr2 154291044 154291343 + 4 NA intron (NM_052917, intron 8 of 12) LTR12D|LTR|ERV1 166245 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 623-120 chr7 36333160 36333401 + 4 NA intron (NM_001199707, intron 4 of 5) L1MB7|LINE|L1 33960 NM_001199706 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 874-8 chr16 24268070 24268545 + 4 NA intron (NM_006539, intron 1 of 3) MIR|SINE|MIR 12754 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 652-7 chr1 170000459 170000779 + 4 NA intron (NM_014970, intron 10 of 19) intron (NM_014970, intron 10 of 19) 68296 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 989-14 chr20 41827083 41827528 + 4 NA Intergenic MIRb|SINE|MIR -208928 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 517-106 chr18 4846381 4846584 + 4 NA Intergenic Intergenic -234700 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 417-124 chr19 52472599 52472834 + 4 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 19163 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 689-33 chr14 59654162 59654365 + 4 NA intron (NM_021136, intron 3 of 8) AluSx|SINE|Alu -7243 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 531-84 chr17 53861257 53861587 + 4 NA Intergenic Intergenic 38495 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 515-270 chr8 132542842 132542992 + 4 NA Intergenic Intergenic 18562 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 1786 chr10 36286991 36288050 + 4 NA Intergenic L1MA8|LINE|L1 509218 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 673-29 chr13 31258714 31258900 + 4 NA intron (NM_194318, intron 6 of 14) L1MEg|LINE|L1 58832 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 984-10 chr5 11516817 11517388 + 4 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 71815 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 1589-2 chr10 41729796 41730718 + 4 NA Intergenic ALR/Alpha|Satellite|centr 637788 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 893-36 chr5 5577818 5578183 + 4 NA Intergenic AluSx3|SINE|Alu 155323 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 712-54 chr21 22421222 22421526 + 4 NA Intergenic Intergenic 322757 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 461-269 chr8 87792220 87792454 + 4 NA Intergenic L1MB3|LINE|L1 81678 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 500-139 chr2 108558416 108558596 + 4 NA intron (NM_001193483, intron 1 of 9) AluY|SINE|Alu 24151 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 699-35 chr15 100702541 100702860 + 4 NA Intergenic L1M4|LINE|L1 100111 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 608-104 chr3 189967701 189967950 + 4 NA intron (NM_018192, intron 13 of 14) intron (NM_018192, intron 13 of 14) 137903 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 688-79 chr3 117560243 117560502 + 4 NA Intergenic Intergenic 130553 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 599-41 chr16 34589334 34589597 + 4 NA Intergenic Intergenic -207985 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 591-29 chr12 34567019 34567183 + 4 NA Intergenic ALR/Alpha|Satellite|centr 544605 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 348-179 chr16 84466645 84466763 + 4 NA intron (NR_146503, intron 1 of 2) L1MD|LINE|L1 657 NR_146503 105371374 Hs.610979 NR_146503 ENSG00000261286 ATP2C2-AS1 - ATP2C2 antisense RNA 1 ncRNA 881-17 chr18 52494415 52494766 + 4 NA intron (NM_005215, intron 1 of 28) L1MEg|LINE|L1 154393 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 530-117 chr2 31542980 31543213 + 4 NA intron (NM_000348, intron 1 of 4) L1MB3|LINE|L1 37842 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 821-44 chr5 7637516 7637934 + 4 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 213408 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 986-5 chr10 22032880 22033325 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -29372 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 2360 chr14 68615868 68616809 + 4 NA intron (NM_001321818, intron 10 of 10) L1MEc|LINE|L1 12449 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 684-95 chr5 45803036 45803406 + 4 NA Intergenic L1MCa|LINE|L1 -106841 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 724-39 chr2 168950662 168950914 + 4 NA intron (NM_003742, intron 19 of 27) L1PB4|LINE|L1 49497 NM_021176 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 1538-2 chr7 28970961 28971704 + 4 NA Intergenic Intergenic -8635 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 808-27 chr2 116244172 116244600 + 4 NA Intergenic L2a|LINE|L2 900571 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 382-251 chr22 41341968 41342131 + 4 NA intron (NM_017590, intron 11 of 22) AluSq2|SINE|Alu -25284 NM_001145398 7008 Hs.181159 NM_003216 ENSG00000167074 TEF - TEF transcription factor, PAR bZIP family member protein-coding 1483 chr11 79819282 79820067 + 4 NA Intergenic Intergenic -378644 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 486-194 chr3 4856027 4856172 + 4 NA Intergenic L1MC5a|LINE|L1 50402 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 846-60 chr8 138254279 138254598 + 4 NA intron (NM_015912, intron 5 of 19) intron (NM_015912, intron 5 of 19) -170893 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 778-57 chr6 40111072 40111436 + 4 NA Intergenic L1PB4|LINE|L1 -176792 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 880-45 chr8 46491928 46492310 + 4 NA Intergenic ALR/Alpha|Satellite|centr 125524 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 1164-7 chr3 95101569 95102194 + 4 NA Intergenic Tigger3|DNA|TcMar-Tigger 163618 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 675-71 chr5 67130504 67130802 + 4 NA intron (NM_001297651, intron 12 of 25) intron (NM_001297651, intron 12 of 25) 66146 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 376-43 chr10 43571005 43571128 + 4 NA intron (NM_001324353, intron 2 of 4) intron (NM_001324353, intron 2 of 4) -2607 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 813-51 chr8 104749075 104749378 + 4 NA Intergenic LTR67B|LTR|ERVL -160202 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 360-446 chr7 122668610 122668711 + 4 NA intron (NM_001167940, intron 2 of 29) intron (NM_001167940, intron 2 of 29) 30457 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 765-46 chr4 74254138 74254612 + 4 NA intron (NM_001144978, intron 6 of 7) L1M3e|LINE|L1 -54095 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 1071-3 chr10 64795264 64795580 + 4 NA Intergenic L1MC3|LINE|L1 -30106 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 723-81 chr8 138677319 138677709 + 4 NA intron (NM_152888, intron 40 of 64) intron (NM_152888, intron 40 of 64) -179784 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 844-44 chr3 10899547 10899797 + 4 NA intron (NM_014229, intron 6 of 13) intron (NM_014229, intron 6 of 13) 83444 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 912-38 chr6 38527622 38528031 + 4 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 46230 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 755-40 chr2 225134996 225135397 + 4 NA Intergenic Intergenic -92728 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 966-10 chr15 39237569 39238126 + 4 NA Intergenic Intergenic -12822 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 1027-18 chr8 124981235 124981643 + 4 NA Intergenic Intergenic 8144 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 872 chr1 29863367 29863659 + 4 NA Intergenic L1MC3|LINE|L1 174099 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 636-47 chr14 72640883 72641052 + 4 NA intron (NM_001280542, intron 8 of 10) L2c|LINE|L2 124147 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 720-20 chr11 122295936 122296216 + 4 NA intron (NR_137179, intron 1 of 4) MIRb|SINE|MIR 13411 NR_137193 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 650-106 chr6 65334758 65335000 + 4 NA TTS (NM_198283) TTS (NM_198283) 33461 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 936-7 chr13 88592807 88593238 + 4 NA Intergenic L1PA15-16|LINE|L1 -33831 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 499-50 chr11 116119686 116119900 + 4 NA Intergenic (ATAGT)n|Simple_repeat|Simple_repeat -359593 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 1073-5 chr14 20162885 20163302 + 4 NA Intergenic L1M2|LINE|L1 19357 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 1006-10 chr15 67081991 67082519 + 4 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) 16653 NM_005902 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 629-12 chr1 158291987 158292249 + 4 NA exon (NM_001765, exon 3 of 6) exon (NM_001765, exon 3 of 6) 2195 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 528-229 chr7 1337330 1337600 + 4 NA Intergenic L1MEc|LINE|L1 104593 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 762-66 chr7 91447225 91447562 + 4 NA Intergenic AluSc8|SINE|Alu 182960 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 700-41 chr18 66457008 66457290 + 4 NA Intergenic L1MDa|LINE|L1 146941 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 519-123 chr2 181231149 181231344 + 4 NA intron (NR_130784, intron 2 of 4) intron (NR_130784, intron 2 of 4) 74406 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 624-5 chr1 90875602 90875846 + 4 NA Intergenic L1MB7|LINE|L1 23965 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 675-57 chr3 46012975 46013214 + 4 NA Intergenic Intergenic 14389 NM_001024644 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 561-68 chr14 65528932 65529080 + 4 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 57904 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 1454-4 chr7 40739466 40740042 + 4 NA intron (NM_024728, intron 13 of 14) L1MD|LINE|L1 240185 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 937-24 chr4 43549933 43550456 + 4 NA Intergenic L2|LINE|L2 -57651 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 1049-12 chr2 239511834 239512141 + 4 NA Intergenic Intergenic 110239 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 646-4 chr1 81701157 81701477 + 4 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 1547 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 812-36 chr4 23594575 23594893 + 4 NA Intergenic Intergenic 286558 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 1181-19 chr9 97783015 97783444 + 4 NA intron (NR_147055, intron 5 of 10) intron (NR_147055, intron 5 of 10) 69851 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 366-50 chr10 58667839 58668012 + 4 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -47090 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 664-19 chr10 53928980 53929340 + 4 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -557070 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 851-38 chr6 64307932 64308273 + 4 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 501266 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 603-158 chr7 79617959 79618269 + 4 NA Intergenic Intergenic 164154 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 645-85 chr3 194938092 194938359 + 4 NA Intergenic Intergenic -156363 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 633-115 chr7 50444665 50444936 + 4 NA 3' UTR (NM_001346564, exon 4 of 4) 3' UTR (NM_001346564, exon 4 of 4) 5550 NM_001287496 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 521-237 chr7 64715138 64715398 + 4 NA Intergenic L1MA8|LINE|L1 36204 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 1322-2 chr7 1328525 1329028 + 4 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat 95904 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 643-70 chr3 25972519 25972765 + 4 NA Intergenic MER44B|DNA|TcMar-Tigger -98947 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 1186-8 chr14 62345845 62346362 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -206130 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 699-38 chr16 80787234 80787418 + 4 NA intron (NM_152342, intron 1 of 6) L3|LINE|CR1 17272 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 959-32 chr7 52443870 52444277 + 4 NA Intergenic L1MC2|LINE|L1 -591560 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 498-37 chr10 83664390 83664565 + 4 NA Intergenic MIRb|SINE|MIR 12612 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 714-57 chr5 17437393 17437805 + 4 NA intron (NR_134273, intron 1 of 1) intron (NR_134273, intron 1 of 1) 862 NR_134273 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 644-14 chr12 43927914 43928110 + 4 NA intron (NM_001286213, intron 2 of 6) L1MEd|LINE|L1 91931 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 1204-9 chr5 167867931 167868494 + 4 NA intron (NM_001080428, intron 1 of 24) MER20|DNA|hAT-Charlie 113283 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 902-5 chr11 69253896 69254331 + 4 NA Intergenic Intergenic -40042 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 931-17 chr20 23464973 23465374 + 4 NA Intergenic L1MB3|LINE|L1 -12297 NM_130794 140880 Hs.128100 NM_080830 ENSG00000125831 CST11 CST8L|CTES2|SC13|dJ322G13.6 cystatin 11 protein-coding 962-2 chr1 106468620 106469049 + 4 NA Intergenic L1M2|LINE|L1 -349405 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 835-16 chr14 70427583 70428009 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -10706 NM_018373 55333 Hs.443661 NM_018373 ENSG00000213463 SYNJ2BP ARIP2|OMP25 synaptojanin 2 binding protein protein-coding 964-7 chr12 126141249 126141724 + 4 NA Intergenic Intergenic 45494 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 765-8 chr11 3356251 3356580 + 4 NA Intergenic HERVFH21-int|LTR|ERV1 22731 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 612-55 chr19 29306099 29306281 + 4 NA intron (NR_040029, intron 9 of 9) L1ME3C|LINE|L1 -93039 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 642-8 chr10 20779596 20779850 + 4 NA TTS (NM_213569) TTS (NM_213569) 117879 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 1716 chr10 27884780 27885700 + 4 NA intron (NM_001290021, intron 10 of 13) AluSc|SINE|Alu 96631 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 688-106 chr8 89804399 89804613 + 4 NA Intergenic Intergenic 46690 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 379-162 chr2 84804454 84804564 + 4 NA intron (NM_001370, intron 70 of 76) intron (NM_001370, intron 70 of 76) 76575 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 1197-4 chr2 114365817 114366380 + 4 NA Intergenic Intergenic -76543 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1157-9 chr22 34988813 34989344 + 4 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 8838 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 332-63 chr10 61300065 61300229 + 4 NA Intergenic MamRep137|DNA|TcMar-Tigger -152492 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 735-17 chr12 126471360 126471718 + 4 NA intron (NR_130748, intron 11 of 11) intron (NR_130748, intron 11 of 11) -22212 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 804-69 chr8 82830184 82830469 + 4 NA Intergenic L1MB3|LINE|L1 -81778 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 850-15 chr16 60322889 60323306 + 4 NA Intergenic L1PA13|LINE|L1 36696 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 1401-10 chrUn_GL000216v2 56090 56670 + 4 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 983-20 chr8 28266728 28267234 + 4 NA Intergenic Intergenic -50287 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 1040-4 chr11 58608034 58608616 + 4 NA intron (NM_001197051, intron 2 of 10) L1ME4b|LINE|L1 -14340 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 737-25 chr14_KI270722v1_random 175940 176271 + 4 NA NA HERV3-int|LTR|ERV1 NA NA 895-32 chr5 3845743 3846107 + 4 NA Intergenic MLT1N2|LTR|ERVL-MaLR 250093 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 749-22 chr11 133247230 133247494 + 4 NA intron (NM_001012393, intron 1 of 7) L2b|LINE|L2 285139 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 642-96 chr5 126303058 126303281 + 4 NA Intergenic Intergenic -17994 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 577-118 chr3 65206104 65206294 + 4 NA Intergenic Intergenic -518199 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 621-117 chr7 53512344 53512564 + 4 NA Intergenic Intergenic 299477 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1274-4 chr5 26369119 26369562 + 4 NA Intergenic Intergenic 669246 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1156-10 chr5 98746827 98747263 + 4 NA Intergenic L1PA10|LINE|L1 -21587 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 785-25 chr19 8910672 8911030 + 4 NA intron (NM_024690, intron 18 of 83) (ATC)n|Simple_repeat|Simple_repeat 68258 NM_145208 85509 Hs.133912 NM_145208 ENSG00000170948 MBD3L1 MBD3L methyl-CpG binding domain protein 3 like 1 protein-coding 1095-13 chr8 140025860 140026342 + 4 NA intron (NM_001160372, intron 17 of 22) L1MB3|LINE|L1 74434 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1180 chr1 197451983 197452530 + 4 NA intron (NR_047564, intron 11 of 11) intron (NR_047564, intron 11 of 11) 184004 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 691-11 chr11 72983763 72983995 + 4 NA intron (NM_014824, intron 8 of 19) intron (NM_014824, intron 8 of 19) 158439 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 1572-4 chr8 80648030 80648747 + 4 NA intron (NM_001033723, intron 7 of 8) intron (NM_001033723, intron 7 of 8) 162162 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 710-77 chr5 45190502 45190751 + 4 NA Intergenic Intergenic 381679 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 526-97 chr17 59376654 59376841 + 4 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) 10664 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 750-41 chr20 16140619 16140987 + 4 NA Intergenic L1MB7|LINE|L1 -154921 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 1030-16 chr20 2360294 2360651 + 4 NA Intergenic L1MB3|LINE|L1 -20429 NM_001254734 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 654-60 chr19 56453099 56453324 + 4 NA intron (NM_001321355, intron 4 of 5) L1MA5|LINE|L1 24134 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 966-27 chr8 48250341 48250797 + 4 NA Intergenic L1PBa|LINE|L1 242138 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 1255-2 chr12 118726119 118726644 + 4 NA Intergenic MER74C|LTR|ERVL 35298 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 382-94 chr13 79451724 79451831 + 4 NA Intergenic Intergenic -29347 NM_001161407 54602 Hs.525093 NM_019080 ENSG00000102471 NDFIP2 N4WBP5A Nedd4 family interacting protein 2 protein-coding 718-31 chr17 31643611 31643857 + 4 NA Intergenic LTR12|LTR|ERV1 68323 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 580-208 chrX 58335136 58335329 + 4 NA Intergenic ALR/Alpha|Satellite|centr -424599 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 272-54 chr10 75552085 75552200 + 4 NA promoter-TSS (NR_030337) promoter-TSS (NR_030337) -316 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 541-161 chr3 121202716 121202947 + 4 NA intron (NM_001348343, intron 9 of 27) L1MB8|LINE|L1 153191 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 913-29 chr4 11828297 11828676 + 4 NA Intergenic Intergenic 45308 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 526-226 chr7 11247561 11247819 + 4 NA Intergenic Intergenic 273818 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 1108-2 chr10 78425933 78426472 + 4 NA Intergenic L1M5|LINE|L1 158860 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 424-24 chr10 44289758 44290035 + 4 NA Intergenic LTR49-int|LTR|ERV1 -2854 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 562-64 chr15 39215866 39216022 + 4 NA Intergenic AluSp|SINE|Alu -34725 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 601-14 chr10 54337755 54337906 + 4 NA intron (NM_001354411, intron 6 of 34) MER101B|LTR|ERV1 -148400 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 950-18 chr22 33261595 33262013 + 4 NA Intergenic Intergenic 153275 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 812-19 chr14 59718125 59718477 + 4 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -71281 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 791-17 chr12 9762187 9762584 + 4 NA Intergenic L2b|LINE|L2 -1484 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 696-79 chr4 53339065 53339304 + 4 NA intron (NM_152540, intron 2 of 8) L1MDa|LINE|L1 26877 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 403-320 chr9 16205455 16205628 + 4 NA intron (NM_001364979, intron 3 of 3) intron (NM_001364979, intron 3 of 3) 47566 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 595-24 chr10 118930915 118931128 + 4 NA Intergenic L1MD1|LINE|L1 -98693 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 963-23 chr4 37552716 37553098 + 4 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) -31326 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 550-165 chr4 94899433 94899729 + 4 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -96651 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 1046-16 chr5 17914781 17915261 + 4 NA intron (NR_134286, intron 5 of 7) intron (NR_134286, intron 5 of 7) 107747 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 552-55 chr14 34711161 34711414 + 4 NA non-coding (NR_028130, exon 4 of 4) non-coding (NR_028130, exon 4 of 4) 2530 NM_021914 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 599-71 chr20 19299685 19299912 + 4 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -15202 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 454-208 chr3 103552189 103552417 + 4 NA Intergenic Intergenic -28187 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 603-147 chr7 7474985 7475219 + 4 NA intron (NM_001037763, intron 14 of 34) intron (NM_001037763, intron 14 of 34) 60771 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 653-92 chr4 62472893 62473089 + 4 NA Intergenic L1M5|LINE|L1 -311226 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 312-362 chr4 28342566 28342726 + 4 NA Intergenic Intergenic -476936 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 519-262 chr9 129927189 129927484 + 4 NA exon (NM_015033, exon 8 of 17) exon (NM_015033, exon 8 of 17) 57731 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 504-101 chr17 53057705 53058002 + 4 NA Intergenic L1MA4|LINE|L1 72348 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 637-111 chr7 61775239 61775494 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1528690 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 374-173 chr2 16885502 16885611 + 4 NA Intergenic Intergenic -219722 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 846-48 chr6 52372770 52373176 + 4 NA intron (NM_133367, intron 1 of 1) MIRb|SINE|MIR 10822 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 905-12 chr16 20226375 20226651 + 4 NA Intergenic Intergenic 101000 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 577-105 chr2 238736774 238737041 + 4 NA Intergenic L1MCa|LINE|L1 111000 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 988-41 chr8 138550825 138551297 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -53331 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 320-148 chr14 51278592 51278735 + 4 NA Intergenic Intergenic 38416 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 531-95 chr19 24392037 24392293 + 4 NA Intergenic ALR/Alpha|Satellite|centr -228718 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 806-13 chr12 116175478 116175845 + 4 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) -27007 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 914-24 chr6 103382103 103382425 + 4 NA Intergenic L1M4|LINE|L1 1477282 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 631-108 chr5 155481899 155482136 + 4 NA Intergenic L1MC1|LINE|L1 468262 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 518-74 chr13 84242559 84242841 + 4 NA intron (NR_046871, intron 3 of 6) L1MC3|LINE|L1 102098 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 379-253 chr4 177127836 177128036 + 4 NA Intergenic Intergenic -181938 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 839-29 chr22 47454708 47455119 + 4 NA Intergenic L1MEg|LINE|L1 32198 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 496-175 chr3 44531393 44531648 + 4 NA Intergenic AluSq2|SINE|Alu -20903 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 676-11 chr1 186253392 186253591 + 4 NA Intergenic Intergenic -42782 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 759-8 chr10 11384659 11385024 + 4 NA Intergenic Intergenic -40167 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 945-7 chr14 95080563 95080980 + 4 NA Intergenic Intergenic 52732 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 729-31 chr17 31912668 31912998 + 4 NA Intergenic Intergenic -11125 NM_018428 55813 Hs.589862 NM_018428 ENSG00000108651 UTP6 C17orf40|HCA66 UTP6 small subunit processome component protein-coding 1123-14 chr4 131135333 131135686 + 4 NA Intergenic Intergenic -629329 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 908-41 chr7 11806851 11807409 + 4 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 25068 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 791-16 chr11 103660880 103661212 + 4 NA Intergenic Intergenic -188860 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 610-148 chr6 127042764 127042958 + 4 NA Intergenic L1PREC2|LINE|L1 -75810 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 862-28 chr6 40390066 40390438 + 4 NA Intergenic Intergenic 11915 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 709-58 chr3 118252896 118253132 + 4 NA Intergenic Intergenic -388754 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 740-17 chr10 107937409 107937736 + 4 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 131721 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 788-56 chr9 31986900 31987306 + 4 NA Intergenic Intergenic -397500 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 716-32 chr19 14320634 14320971 + 4 NA intron (NR_134908, intron 2 of 3) intron (NR_134908, intron 2 of 3) -12941 NR_134916 101928845 Hs.531617 NR_134916 ENSG00000267147 LINC01842 - long intergenic non-protein coding RNA 1842 ncRNA 976-20 chr5 159046292 159046711 + 4 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 51455 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 1870-2 chr7 3397342 3398059 + 4 NA intron (NM_152744, intron 1 of 44) L1MB4|LINE|L1 96448 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1181-8 chr17 57160494 57160950 + 4 NA Intergenic L1MB7|LINE|L1 65233 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 1310-2 chr14 31911380 31911984 + 4 NA Intergenic L1MA9|LINE|L1 -33171 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 954-36 chr4 44257081 44257377 + 4 NA intron (NM_198353, intron 1 of 1) L1ME3A|LINE|L1 191580 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 548-178 chr5 30089946 30090135 + 4 NA Intergenic Intergenic 209480 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 442-71 chr14 38602859 38603041 + 4 NA Intergenic HAL1ME|LINE|L1 -279646 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 3025 chr7 6668007 6669362 + 4 NA Intergenic L1MD|LINE|L1 31366 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 426-216 chr4 185632094 185632210 + 4 NA intron (NM_001145670, intron 11 of 20) intron (NM_001145670, intron 11 of 20) 24594 NM_001145675 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 595-51 chr14 75048060 75048237 + 4 NA exon (NM_001040108, exon 2 of 13) exon (NM_001040108, exon 2 of 13) 3319 NM_014381 27030 Hs.436650 NM_014381 ENSG00000119684 MLH3 HNPCC7 mutL homolog 3 protein-coding 1576-3 chr12 101009167 101009893 + 4 NA intron (NM_001286616, intron 7 of 26) HAL1|LINE|L1 107884 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 1358-2 chr18 47609493 47610147 + 4 NA Intergenic L1ME4b|LINE|L1 229324 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 713-82 chr9 134011116 134011344 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -14246 NR_149319 266655 Hs.654869 NM_001355256 ENSG00000235106 BRD3OS LINC00094|LP2477|NCRNA00094 BRD3 opposite strand protein-coding 685-46 chr2 79719003 79719218 + 4 NA intron (NM_001282598, intron 2 of 17) L1PA16|LINE|L1 -69751 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 712-7 chr1 177003126 177003394 + 4 NA intron (NM_207108, intron 8 of 21) L1PB|LINE|L1 26185 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 622-109 chr5 111964579 111964809 + 4 NA intron (NR_046678, intron 2 of 3) L1ME3B|LINE|L1 12238 NM_001142474 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 797-35 chr4 32733634 32734019 + 4 NA Intergenic L1PA10|LINE|L1 382788 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1074-13 chr5 2518862 2519335 + 4 NA Intergenic Intergenic -193493 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 605-50 chr2 67588067 67588246 + 4 NA Intergenic L1MCa|LINE|L1 190823 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 460-189 chr3 18457685 18457832 + 4 NA intron (NR_125803, intron 1 of 6) intron (NR_125803, intron 1 of 6) -12166 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 1297 chr11 54930277 54930779 + 4 NA Intergenic ALR/Alpha|Satellite|centr 223696 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 667-48 chr2 37164951 37165136 + 4 NA Intergenic L1MEc|LINE|L1 -7996 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 930-22 chr3 25992673 25993162 + 4 NA Intergenic L1M4|LINE|L1 -119222 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 605-27 chr14 66581463 66581746 + 4 NA intron (NM_001024218, intron 1 of 21) L1MA8|LINE|L1 74197 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 700-36 chr17 73534545 73534783 + 4 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 20981 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 722-76 chr8 82134138 82134558 + 4 NA Intergenic L1PB1|LINE|L1 -292062 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 517-115 chr19 37723845 37724119 + 4 NA Intergenic L1MEc|LINE|L1 -4221 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 746-90 chr9 77540806 77541203 + 4 NA intron (NM_004297, intron 1 of 6) L1MA4A|LINE|L1 93355 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 1289-4 chr8 122966394 122967010 + 4 NA intron (NM_001362797, intron 4 of 4) L1PB1|LINE|L1 59070 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 598-14 chr1 242775328 242775622 + 4 NA Intergenic Intergenic -250778 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 513-205 chr4 67338092 67338373 + 4 NA Intergenic LTR49-int|LTR|ERV1 83768 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 624-98 chr5 35220451 35220647 + 4 NA intron (NM_000949, intron 1 of 9) L2a|LINE|L2 9938 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 761-39 chr22 44476136 44476377 + 4 NA Intergenic L1MDa|LINE|L1 21977 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 891-17 chr18 3816051 3816342 + 4 NA intron (NM_001242761, intron 4 of 11) MIRb|SINE|MIR 29162 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 630-151 chr9 111497555 111497761 + 4 NA Intergenic LTR56|LTR|ERV1 -13275 NM_001363756 23392 Hs.368255 NM_001080398 ENSG00000136813 ECPAS ECM29|KIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 569-150 chr5 163796866 163797083 + 4 NA Intergenic AluYm1|SINE|Alu 291355 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 1442-3 chr2 19660857 19661423 + 4 NA Intergenic Intergenic -207714 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 336-475 chr5 169735643 169735778 + 4 NA intron (NR_156756, intron 22 of 52) intron (NR_156756, intron 22 of 52) 98435 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 634-21 chr10 86186800 86187068 + 4 NA intron (NM_017551, intron 3 of 15) intron (NM_017551, intron 3 of 15) 77854 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 896-13 chr17 79054218 79054580 + 4 NA Intergenic L1MEg|LINE|L1 20100 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 638-20 chr10 78124907 78125217 + 4 NA Intergenic Intergenic 91199 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 552-93 chr18 72442431 72442610 + 4 NA Intergenic Intergenic 101822 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 667-88 chr5 115000013 115000307 + 4 NA Intergenic Intergenic 169748 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 795-57 chr8 82900277 82900563 + 4 NA Intergenic Intergenic -11684 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 602-137 chr8 132594246 132594473 + 4 NA intron (NR_135913, intron 9 of 10) L2a|LINE|L2 -32880 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 856-30 chr3 86296676 86297099 + 4 NA Intergenic Intergenic -185056 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 741-5 chr1 244516895 244517124 + 4 NA intron (NM_001130957, intron 7 of 21) L1ME4c|LINE|L1 55638 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 470-210 chr5 23123240 23123448 + 4 NA Intergenic Intergenic -270000 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 569-152 chr6 13572847 13573135 + 4 NA Intergenic LTR75_1|LTR|ERV1 -1538 NM_031244 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 713-50 chr21 32179592 32179793 + 4 NA Intergenic Intergenic -93397 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 1251-10 chrX 64930289 64930739 + 4 NA intron (NM_001178032, intron 1 of 4) L1PBa|LINE|L1 45936 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 1551-4 chrX 73418415 73419319 + 4 NA Intergenic Intergenic -28387 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 402-333 chr8 35761138 35761356 + 4 NA intron (NM_001322818, intron 14 of 16) intron (NM_001322818, intron 14 of 16) -50927 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 894-35 chr5 89199487 89199993 + 4 NA intron (NR_136219, intron 6 of 9) L1M3e|LINE|L1 -295635 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 698-69 chr5 25934869 25935263 + 4 NA Intergenic L1ME3G|LINE|L1 744113 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 515-209 chr5 76475294 76475517 + 4 NA intron (NM_006633, intron 2 of 35) LTR29|LTR|ERV1 -72004 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 528-142 chr20 7078387 7078624 + 4 NA Intergenic L1MC3|LINE|L1 175697 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 783-4 chr1 173647710 173648086 + 4 NA intron (NM_198493, intron 2 of 5) AluJr|SINE|Alu 12560 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 772-61 chr9 77611282 77611689 + 4 NA intron (NM_004297, intron 1 of 6) LTR40b|LTR|ERVL 36837 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 682-29 chr14 47819581 47819827 + 4 NA Intergenic L1MA3|LINE|L1 -24690 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 2294-2 chr8 143414805 143416051 + 4 NA Intergenic HAL1|LINE|L1 -2251 NR_126358 104326051 Hs.202140 NR_126358 ENSG00000254338 MAFA-AS1 TCONS_00014882 MAFA antisense RNA 1 ncRNA 1319-5 chr4 49058653 49059095 + 4 NA intron (NM_001286791, intron 15 of 15) L1MA8|LINE|L1 72232 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 276-98 chr12 14839052 14839184 + 4 NA TTS (NM_001354646) TTS (NM_001354646) 4408 NM_001354646 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 1387-2 chr14 45879979 45880494 + 4 NA Intergenic LTR1E|LTR|ERV1 -164634 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 744-70 chr7 95837971 95838297 + 4 NA intron (NM_004411, intron 5 of 16) L1M3de|LINE|L1 65628 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 796-17 chr14 78552781 78553168 + 4 NA intron (NM_004796, intron 1 of 16) L1MA4|LINE|L1 149255 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 749-34 chr14 77928892 77929340 + 4 NA intron (NR_158988, intron 9 of 10) intron (NR_158988, intron 9 of 10) 129007 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 368-479 chr9 35635977 35636100 + 4 NA Intergenic HAL1ME|LINE|L1 -10232 NR_135130 101926948 Hs.639412 NR_135130 LOC101926948 - uncharacterized LOC101926948 ncRNA 980-5 chr10 39215065 39215467 + 4 NA Intergenic ALR/Alpha|Satellite|centr 518670 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 579-156 chr7 62682583 62682828 + 4 NA Intergenic ALR/Alpha|Satellite|centr 621351 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 585-143 chr6 151934676 151934883 + 4 NA intron (NM_001122741, intron 4 of 8) intron (NM_001122741, intron 4 of 8) 125672 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 681-61 chr4 113845712 113846025 + 4 NA Intergenic Intergenic -83941 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 715-79 chr6 67912933 67913181 + 4 NA Intergenic L1MC3|LINE|L1 -142294 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 881-2 chr10 35440689 35441148 + 4 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 104044 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 528-57 chr12 21067371 21067612 + 4 NA intron (NM_001009562, intron 11 of 12) intron (NM_001009562, intron 11 of 12) 51795 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 458-218 chr6 18552832 18552989 + 4 NA intron (NR_149116, intron 3 of 7) L1PA5|LINE|L1 -18874 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 514-97 chr15 36658559 36658726 + 4 NA intron (NM_001321757, intron 6 of 12) intron (NM_001321757, intron 6 of 12) 63765 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 715-12 chr11 123214551 123214828 + 4 NA Intergenic L1ME4b|LINE|L1 -19441 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 812-38 chr4 188745990 188746282 + 4 NA Intergenic L1ME3A|LINE|L1 -30521 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 471-26 chr10 43454315 43454530 + 4 NA intron (NM_001355444, intron 1 of 3) intron (NM_001355444, intron 1 of 3) 17311 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 544-109 chr2 30413250 30413424 + 4 NA Intergenic Intergenic -33909 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 903-2 chr10 55102357 55102747 + 4 NA intron (NM_001354404, intron 3 of 34) MER44A|DNA|TcMar-Tigger -301261 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 802-57 chr5 126166678 126167034 + 4 NA Intergenic L1M2|LINE|L1 -12721 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 579-164 chr8 73664191 73664362 + 4 NA intron (NM_001164383, intron 1 of 9) AluJb|SINE|Alu 82564 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 960-9 chr14 62036755 62037214 + 4 NA intron (NM_001367661, intron 4 of 8) L2c|LINE|L2 -80373 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 687-29 chr12 20137284 20137603 + 4 NA Intergenic Intergenic -9542 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 762-34 chr2 44405018 44405327 + 4 NA intron (NM_024766, intron 3 of 10) L1ME3G|LINE|L1 43225 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 795-49 chr6 159936095 159936382 + 4 NA Intergenic MLT1F2|LTR|ERVL-MaLR -32861 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 803-43 chr5 35554289 35554596 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR -63421 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 645-130 chr8 133670188 133670563 + 4 NA intron (NR_134462, intron 1 of 2) L1MD3|LINE|L1 13691 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 466-186 chr4 49053472 49053680 + 4 NA intron (NM_001286791, intron 15 of 15) L1MA8|LINE|L1 66934 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 762-63 chr7 3851110 3851406 + 4 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -278427 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1600-2 chr19 40014424 40015169 + 4 NA exon (NM_001297763, exon 7 of 7) exon (NM_001297763, exon 7 of 7) 17736 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 321-316 chr2 204739909 204740036 + 4 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 194497 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 926-25 chr6 71523961 71524376 + 4 NA Intergenic Intergenic 103141 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 531-86 chr17 71561606 71561938 + 4 NA Intergenic Intergenic -359593 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1203-6 chr18 80086708 80087377 + 4 NA Intergenic Intergenic 19786 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 475-104 chr16 82405216 82405409 + 4 NA Intergenic L2a|LINE|L2 -221657 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 614-114 chr6 162980211 162980465 + 4 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 73823 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 424-295 chrUn_GL000216v2 6098 6316 + 4 NA NA (CATTC)n|Satellite|Satellite NA NA 467-292 chr9 11818058 11818259 + 4 NA Intergenic Intergenic -875227 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 482-12 chr1 96596730 96596897 + 4 NA Intergenic Intergenic -124792 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 1145-10 chr6 75590916 75591646 + 4 NA Intergenic MER101-int|LTR|ERV1 -10228 NM_001304792 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 780-60 chr7 64018368 64018766 + 4 NA intron (NR_145488, intron 4 of 4) intron (NR_145488, intron 4 of 4) 11535 NR_039987 100506050 Hs.405628 NR_039987 ENSG00000228564 LINC01005 - long intergenic non-protein coding RNA 1005 ncRNA 575-4 chr1 63989343 63989737 + 4 NA intron (NM_005012, intron 1 of 8) L3|LINE|CR1 122665 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 532-15 chr1 227688913 227689105 + 4 NA Intergenic L1M3de|LINE|L1 8698 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 851-43 chr8 48413328 48413643 + 4 NA Intergenic L1MB5|LINE|L1 -138082 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 646-124 chr8 50483582 50483874 + 4 NA intron (NR_135797, intron 8 of 20) intron (NR_135797, intron 8 of 20) 319597 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 762-76 chr8 127309597 127310020 + 4 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 65171 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 930 chr1 5011796 5012063 + 4 NA Intergenic Intergenic 357320 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 312-481 chr7 40690510 40690641 + 4 NA intron (NM_024728, intron 13 of 14) AluJb|SINE|Alu 289364 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 604-122 chr4 135782416 135782596 + 4 NA Intergenic L1M4b|LINE|L1 105587 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 532-99 chr18 5654556 5654753 + 4 NA Intergenic Intergenic -25663 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 685-60 chr20 48407923 48408161 + 4 NA Intergenic MER20B|DNA|hAT-Charlie 48131 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 993-24 chr8 138419825 138420223 + 4 NA intron (NM_001362965, intron 1 of 19) L1PA15|LINE|L1 77237 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 566-43 chr13 34968586 34968831 + 4 NA intron (NM_015678, intron 1 of 57) intron (NM_015678, intron 1 of 57) 26421 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 774-9 chr10 99283725 99284008 + 4 NA Intergenic L1M4|LINE|L1 -45233 NM_001345888 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 1017-23 chr8 79470742 79471142 + 4 NA Intergenic LTR54B|LTR|ERV1 138754 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 673-63 chr2 120192409 120192621 + 4 NA Intergenic L1M4c|LINE|L1 30885 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 479-106 chr2 95225057 95225266 + 4 NA Intergenic L1MB8|LINE|L1 -49288 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 534-73 chr14 60377168 60377374 + 4 NA Intergenic L1MB2|LINE|L1 54075 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 613-63 chr2 124690653 124690890 + 4 NA intron (NM_130773, intron 13 of 23) L2c|LINE|L2 665484 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 322-387 chr4 112895976 112896086 + 4 NA intron (NM_001354271, intron 1 of 42) intron (NM_001354271, intron 1 of 42) 35044 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 1477-7 chr5 26779345 26780064 + 4 NA Intergenic LTR106_Mam|LTR|LTR 258882 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 764-22 chr14 43272288 43272562 + 4 NA Intergenic Intergenic 1234858 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 770-55 chr4 80489018 80489327 + 4 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 153452 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 355-445 chr6 140980673 140980763 + 4 NA Intergenic Intergenic 296904 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 728-84 chr7 8661881 8662205 + 4 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 228434 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 787-46 chr7 21269691 21269990 + 4 NA Intergenic Intergenic -158243 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 1139-2 chr13 111453820 111454280 + 4 NA Intergenic L1ME1|LINE|L1 133408 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 631-65 chr2 49541071 49541337 + 4 NA Intergenic L1MA3|LINE|L1 -386677 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 654-5 chr1 105086128 105086492 + 4 NA Intergenic Intergenic 532625 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 1348-9 chr7 7228742 7229423 + 4 NA intron (NM_020156, intron 1 of 3) intron (NM_020156, intron 1 of 3) -26072 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 1083-4 chr13 31521223 31521548 + 4 NA Intergenic Intergenic -218141 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 514-16 chr1 208621014 208621234 + 4 NA Intergenic L1MA1|LINE|L1 -107564 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 678-98 chr7 88628217 88628513 + 4 NA Intergenic MIR|SINE|MIR -131335 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 594-13 chr10 19372890 19373180 + 4 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 324234 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 606-21 chr10 78608800 78609034 + 4 NA Intergenic L1MD2|LINE|L1 341575 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 676-103 chr7 7131930 7132233 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -35295 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 615-42 chr15 24891753 24892017 + 4 NA intron (NM_001349456, intron 2 of 12) MER31-int|LTR|ERV1 35373 NM_001349462 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 1317-8 chr7 84580363 84581107 + 4 NA intron (NR_110080, intron 3 of 3) intron (NR_110080, intron 3 of 3) 48259 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 859-20 chr19 57471464 57471871 + 4 NA 3' UTR (NM_001330613, exon 3 of 3) 3' UTR (NM_001330613, exon 3 of 3) 5899 NM_001330613 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 872-42 chr6 65968435 65968747 + 4 NA Intergenic Intergenic 180712 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 536-93 chr17 52528492 52528780 + 4 NA intron (NR_146898, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat 138114 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 536-123 chr2 102938850 102939117 + 4 NA Intergenic L1MEf|LINE|L1 -43261 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 824-47 chr8 53451224 53451582 + 4 NA Intergenic L1M4a1|LINE|L1 72562 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 780-22 chr16 62918926 62919189 + 4 NA Intergenic LTR16C|LTR|ERVL -882619 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 694-134 chr9 84509710 84510062 + 4 NA Intergenic Intergenic -141159 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 644-3 chr1 190844956 190845253 + 4 NA Intergenic Intergenic 220214 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 786-37 chr20 63077568 63077980 + 4 NA intron (NR_033370, intron 1 of 4) L1MB3|LINE|L1 -23518 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 462-85 chr14 68541985 68542265 + 4 NA TTS (NM_001321812) TTS (NM_001321812) 86662 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 558-59 chr15 56581723 56581899 + 4 NA Intergenic MER65-int|LTR|ERV1 -116674 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 518-142 chr2 128708488 128708694 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR -156009 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 578-127 chr4 51920872 51921043 + 4 NA Intergenic Intergenic 77378 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 748-81 chr7 49346218 49346595 + 4 NA Intergenic L2|LINE|L2 421859 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 578-34 chr10 131525457 131525684 + 4 NA Intergenic L1MC3|LINE|L1 -213849 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 414-256 chr5 12145620 12145814 + 4 NA Intergenic Intergenic -241271 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 312-109 chr12 74285072 74285231 + 4 NA intron (NR_038300, intron 2 of 6) MLT2F|LTR|ERVL 7480 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 597-35 chr11 78691724 78691895 + 4 NA intron (NM_001098816, intron 28 of 33) intron (NM_001098816, intron 28 of 33) -116945 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 536-60 chr12 82153004 82153246 + 4 NA Intergenic L1ME4b|LINE|L1 199406 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 633-76 chr22 48182961 48183234 + 4 NA Intergenic Intergenic -91267 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 548-141 chr3 8345069 8345404 + 4 NA intron (NR_033378, intron 3 of 3) L1ME1|LINE|L1 156422 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 701-47 chr2 166744396 166744644 + 4 NA Intergenic LTR12|LTR|ERV1 -143967 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 746-28 chr16 61587657 61588044 + 4 NA Intergenic L1MCc|LINE|L1 448588 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 740-38 chr2 22723992 22724329 + 4 NA Intergenic L1MA7|LINE|L1 187681 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 821-29 chr20 9153601 9153916 + 4 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -63632 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 650-90 chr5 1700043 1700247 + 4 NA Intergenic L1MEg|LINE|L1 8723 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 817-11 chr12 118699115 118699383 + 4 NA Intergenic MIR|SINE|MIR 62430 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 671-61 chr3 83931662 83931889 + 4 NA Intergenic MER61-int|LTR|ERV1 937800 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 285-385 chr7 41266702 41266798 + 4 NA Intergenic Intergenic 165146 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 548-214 chr7 72101786 72101987 + 4 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 235505 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 854-21 chr2 33209410 33209748 + 4 NA intron (NM_206943, intron 7 of 33) intron (NM_206943, intron 7 of 33) 74982 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 1123-13 chr4 38647042 38647426 + 4 NA intron (NR_026804, intron 1 of 7) intron (NR_026804, intron 1 of 7) -16965 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 546-115 chr2 143868574 143868929 + 4 NA Intergenic L1ME3D|LINE|L1 -68316 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 653-113 chr7 54729799 54730109 + 4 NA Intergenic L1M5|LINE|L1 29257 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 533-207 chr6 164030675 164030888 + 4 NA Intergenic Intergenic -359297 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 924-32 chr5 12563419 12563824 + 4 NA Intergenic Intergenic -11236 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 505-188 chr3 5830791 5830963 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -580622 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 583-109 chr3 26182046 26182323 + 4 NA Intergenic Intergenic -308489 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 737-11 chr11 114918795 114919084 + 4 NA Intergenic Intergenic 240412 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 1263 chr1 200398748 200399136 + 4 NA Intergenic Intergenic 11094 NM_001281294 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 709-59 chr3 118356295 118356633 + 4 NA Intergenic L1M1|LINE|L1 -285304 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 631-14 chr1 242536788 242537051 + 4 NA Intergenic Intergenic -12222 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 934-17 chr2 139264851 139265272 + 4 NA Intergenic Intergenic 367737 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 1392-6 chr9 129303111 129303816 + 4 NA Intergenic L1ME2|LINE|L1 -17553 NR_149714 414318 Hs.449434 NR_149714 C9orf106 - chromosome 9 open reading frame 106 (putative) ncRNA 630-16 chr12 9833565 9833751 + 4 NA intron (NM_001366534, intron 3 of 3) intron (NM_001366534, intron 3 of 3) 6177 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 810-15 chr14 88972000 88972465 + 4 NA Intergenic HAL1ME|LINE|L1 147581 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 984-19 chr7 92966592 92966945 + 4 NA Intergenic Intergenic -130141 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 694-131 chr8 130778329 130778624 + 4 NA Intergenic Intergenic 262433 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 650-31 chr14 75613740 75613973 + 4 NA intron (NM_001195283, intron 1 of 9) MSTA|LTR|ERVL-MaLR 8316 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 801-40 chr5 8554618 8555076 + 4 NA Intergenic L1MC3|LINE|L1 93922 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 519-42 chr12 8156699 8156916 + 4 NA Intergenic Intergenic -15747 NM_001004328 440077 Hs.438536 NM_001004328 ENSG00000196946 ZNF705A - zinc finger protein 705A protein-coding 1344-2 chr4 15205705 15206265 + 4 NA intron (NR_125911, intron 2 of 5) L2a|LINE|L2 -134003 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 404-285 chr7 2808827 2808956 + 4 NA intron (NM_001293092, intron 1 of 2) L2a|LINE|L2 6339 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 908-29 chr3 117538719 117539033 + 4 NA Intergenic Intergenic 152049 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 620-43 chr15 94814458 94814735 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR -40767 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 957-17 chr20 31067249 31067613 + 4 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -190233 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 647-105 chr9 101409045 101409235 + 4 NA exon (NM_001278231, exon 3 of 3) exon (NM_001278231, exon 3 of 3) 10286 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 780-56 chr6 66008213 66008499 + 4 NA Intergenic L1MA4A|LINE|L1 220477 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 660-20 chr12 41186898 41187171 + 4 NA Intergenic Intergenic -1286 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 707-24 chr14 59642600 59642842 + 4 NA intron (NM_021136, intron 3 of 8) L1MEg|LINE|L1 4299 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 606-88 chr2 123603661 123603858 + 4 NA Intergenic Intergenic 421415 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 708-69 chr6 62189789 62190063 + 4 NA intron (NR_146874, intron 1 of 13) L2a|LINE|L2 96299 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 997-9 chr2 40312717 40313089 + 4 NA intron (NM_001351483, intron 2 of 8) L1ME1|LINE|L1 117401 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 637-22 chr11 54814273 54814483 + 4 NA Intergenic ALR/Alpha|Satellite|centr 107546 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 606-49 chr14 42507621 42507801 + 4 NA Intergenic L1PA14|LINE|L1 900855 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 824-9 chr14 36152786 36153190 + 4 NA intron (NR_049735, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR 23663 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 757-64 chr9 71212943 71213370 + 4 NA intron (NM_001366143, intron 1 of 25) MER58B|DNA|hAT-Charlie -91535 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 619-36 chr12 94913377 94913656 + 4 NA Intergenic L1MA3|LINE|L1 79062 NR_036685 160313 Hs.527883 NR_036685 ENSG00000216306 KRT19P2 KRT19P5 keratin 19 pseudogene 2 pseudo 543-215 chr6 61653471 61653667 + 4 NA intron (NR_146873, intron 10 of 11) L2a|LINE|L2 79439 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 443-27 chr1 233561890 233562107 + 4 NA Intergenic L1MA5|LINE|L1 -52108 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 682-61 chr3 15907013 15907311 + 4 NA Intergenic Intergenic 33391 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 832-49 chr9 109133151 109133391 + 4 NA 3' UTR (NM_014334, exon 5 of 5) 3' UTR (NM_014334, exon 5 of 5) -13324 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 646-76 chr21 32125861 32126199 + 4 NA Intergenic HAL1|LINE|L1 -39735 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 952-11 chr14 62668633 62668968 + 4 NA Intergenic Intergenic 376658 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 967-23 chr7 4411751 4412286 + 4 NA Intergenic AluJr|SINE|Alu -270277 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 615-82 chr3 31435619 31435871 + 4 NA Intergenic Intergenic -97180 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 635-101 chr7 61958606 61959067 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1345220 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 712-62 chr3 183084201 183084656 + 4 NA intron (NR_120639, intron 2 of 15) intron (NR_120639, intron 2 of 15) 14815 NR_120640 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 723-41 chr2 115530553 115530923 + 4 NA intron (NM_001321912, intron 6 of 25) MER5B|DNA|hAT-Charlie 186923 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 749-89 chr8 64781644 64781957 + 4 NA intron (NM_004820, intron 1 of 5) MLT1D|LTR|ERVL-MaLR 16937 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 1296-3 chr15 76631449 76631835 + 4 NA intron (NR_148227, intron 21 of 32) L1PA10|LINE|L1 44995 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 527-168 chr3 11070053 11070254 + 4 NA Intergenic LTR12C|LTR|ERV1 -50929 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 348-484 chr7 13939892 13940028 + 4 NA intron (NM_001163148, intron 5 of 12) intron (NM_001163148, intron 5 of 12) 46554 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 674-56 chr22 32703845 32704170 + 4 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -96809 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 1155-6 chr8 130550998 130551659 + 4 NA Intergenic L1MA4|LINE|L1 -107654 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 865-12 chr13 25525247 25525725 + 4 NA intron (NM_016529, intron 2 of 36) L1MA4|LINE|L1 56712 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 689-34 chr14 62603255 62603753 + 4 NA Intergenic Intergenic 441954 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 678-78 chr4 82152312 82152593 + 4 NA Intergenic L1MEg|LINE|L1 221539 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 1224-10 chr8 56463775 56464392 + 4 NA intron (NR_125813, intron 1 of 3) MSTB-int|LTR|ERVL-MaLR -17442 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 587-118 chr4 46490744 46490926 + 4 NA Intergenic Intergenic -100707 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 835-28 chr2 75448557 75448921 + 4 NA Intergenic L1MEf|LINE|L1 -75329 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 804-37 chr20 33381977 33382181 + 4 NA intron (NM_016082, intron 7 of 13) AluJo|SINE|Alu 19440 NM_016408 51654 Hs.435952 NM_016082 ENSG00000101391 CDK5RAP1 C20orf34|C42|CGI-05|HSPC167 CDK5 regulatory subunit associated protein 1 protein-coding 487-164 chr20 19486597 19486879 + 4 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -202142 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 924-23 chr2 48822935 48823328 + 4 NA Intergenic Intergenic -67407 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 914-25 chr6 122288911 122289206 + 4 NA Intergenic Intergenic -110493 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 658-71 chr20 11873386 11873685 + 4 NA Intergenic Intergenic -2820 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 1712-2 chr5 150894335 150894896 + 4 NA 3' UTR (NM_001172832, exon 5 of 5) 3' UTR (NM_001172832, exon 5 of 5) 10368 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 566-127 chr3 87697375 87697611 + 4 NA Intergenic Intergenic -95213 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 567-60 chr15 57798226 57798469 + 4 NA Intergenic Intergenic 91633 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 960-10 chr14 83121302 83121630 + 4 NA Intergenic HAL1|LINE|L1 478834 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 623-100 chr4 172448486 172448664 + 4 NA intron (NM_001034845, intron 5 of 12) LTR84b|LTR|ERVL 240342 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 959-21 chr21 28675260 28675750 + 4 NA Intergenic Intergenic 136187 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 340-296 chr2 208098742 208098869 + 4 NA Intergenic L1MA2|LINE|L1 -20324 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 603-176 chr9 78844552 78844884 + 4 NA Intergenic L1MA3|LINE|L1 300948 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 1019-8 chr17 9890082 9890586 + 4 NA 3' UTR (NM_004246, exon 13 of 13) 3' UTR (NM_004246, exon 13 of 13) 14937 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 536-150 chr20 53558304 53558597 + 4 NA intron (NR_110051, intron 2 of 5) intron (NR_110051, intron 2 of 5) 5680 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 1056-10 chr3 163636852 163637398 + 4 NA Intergenic L1M3|LINE|L1 -333824 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 1499-3 chr7 52672201 52673011 + 4 NA Intergenic Intergenic -363027 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 580-55 chr15 60044656 60044926 + 4 NA Intergenic Intergenic 40480 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 878-38 chr5 178905320 178905804 + 4 NA intron (NM_030613, intron 1 of 4) intron (NM_030613, intron 1 of 4) 9649 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 858-22 chr19 34813235 34813720 + 4 NA Intergenic Intergenic 19392 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 1187-7 chr20 12200995 12201566 + 4 NA Intergenic Intergenic 283387 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 522-75 chr14 47016950 47017192 + 4 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 326175 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 526-74 chr14 41477725 41477909 + 4 NA Intergenic L1ME3E|LINE|L1 -129039 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 432-52 chr11 112710037 112710210 + 4 NA Intergenic Intergenic -154321 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 613-125 chr7 56230434 56230671 + 4 NA Intergenic L1M5|LINE|L1 -114135 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 589-41 chr17 54044052 54044219 + 4 NA Intergenic Intergenic 221208 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 1492-2 chr11 54810723 54811475 + 4 NA Intergenic ALR/Alpha|Satellite|centr 104267 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 1020-10 chr2 50386017 50386517 + 4 NA intron (NM_001330093, intron 17 of 22) L3|LINE|CR1 -38511 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 445-257 chr7 77469801 77470094 + 4 NA Intergenic L2|LINE|L2 -53598 NM_001350899 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 1278-4 chr5 12654436 12654918 + 4 NA intron (NR_033383, intron 2 of 3) L1ME3Cz|LINE|L1 -13182 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 593-26 chr11 87516823 87517050 + 4 NA Intergenic Intergenic 202475 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 285-82 chr12 28310167 28310245 + 4 NA intron (NM_001352084, intron 6 of 11) intron (NM_001352084, intron 6 of 11) -119468 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 890-27 chr4 150637883 150638403 + 4 NA intron (NM_001367550, intron 37 of 56) AluSg|SINE|Alu 55992 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 620-90 chr3 86713131 86713389 + 4 NA Intergenic L2c|LINE|L2 231317 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 872-23 chr17 74705194 74705480 + 4 NA non-coding (NR_110298, exon 2 of 6) non-coding (NR_110298, exon 2 of 6) 7586 NM_001289083 146722 Hs.567706 NM_139018 ENSG00000186074 CD300LF CD300f|CLM-1|CLM1|IREM-1|IREM1|IgSF13|LMIR3|NKIR CD300 molecule like family member f protein-coding 574-185 chr8 120753709 120753918 + 4 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -7440 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 316-357 chr3 97061911 97062048 + 4 NA intron (NM_001080448, intron 3 of 17) L2b|LINE|L2 247385 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 910-21 chr2 126056240 126056720 + 4 NA Intergenic LTR9|LTR|ERV1 61505 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 731-49 chr3 187653210 187653460 + 4 NA Intergenic Intergenic 17059 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 696-5 chr1 67121442 67121740 + 4 NA intron (NM_001276352, intron 4 of 8) MER63D|DNA|hAT-Blackjack 13379 NM_001276352 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 732-13 chr10 83088153 83088670 + 4 NA Intergenic L1MEc|LINE|L1 588678 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1005-21 chr8 57661782 57662133 + 4 NA Intergenic Intergenic -84192 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 689-70 chr4 91167597 91167919 + 4 NA intron (NM_001145065, intron 10 of 10) MIRb|SINE|MIR 932727 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 573-45 chr11 115856433 115856709 + 4 NA Intergenic L1ME3|LINE|L1 -96371 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 912-43 chr8 83285446 83285915 + 4 NA Intergenic Intergenic -118078 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 574-120 chr4 19479207 19479416 + 4 NA Intergenic Intergenic -772594 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 1313-3 chr12 22696355 22696869 + 4 NA Intergenic L1MC4|LINE|L1 71441 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 756-15 chr15 25133631 25133942 + 4 NA intron (NR_146177, intron 61 of 147) intron (NR_146177, intron 61 of 147) -1856 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 827-24 chr2 146648385 146648746 + 4 NA Intergenic L1ME1|LINE|L1 61508 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 1127-8 chr8 134387713 134388353 + 4 NA Intergenic Intergenic -210038 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 808-41 chr5 16003763 16004037 + 4 NA Intergenic L3|LINE|CR1 68718 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 630-130 chr7 62880181 62880484 + 4 NA Intergenic ALR/Alpha|Satellite|centr 423724 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 547-212 chr7 8550998 8551328 + 4 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 117554 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 367-304 chr3 189252972 189253110 + 4 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -12447 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 1327-3 chr17 79065535 79066385 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -8977 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 800-28 chr19 12514459 12514829 + 4 NA Intergenic Intergenic -29828 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 645-89 chr4 71408491 71408693 + 4 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 69539 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 1584 chr2 146294373 146295063 + 4 NA Intergenic AluSc8|SINE|Alu -292339 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 466-223 chr6 41204857 41205090 + 4 NA Intergenic L1MB8|LINE|L1 -3824 NM_024807 79865 Hs.164797 NM_024807 ENSG00000112195 TREML2 C6orf76|TLT-2|TLT2|dJ238O23.1 triggering receptor expressed on myeloid cells like 2 protein-coding 633-35 chr13 50535013 50535362 + 4 NA Intergenic L1MB7|LINE|L1 -7738 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 433-188 chr3 194237433 194237636 + 4 NA intron (NR_125403, intron 1 of 2) L1MC1|LINE|L1 -10114 NR_125402 101929337 Hs.548086 NR_125402 ENSG00000238097 LINC02037 - long intergenic non-protein coding RNA 2037 ncRNA 478-162 chr20 42812185 42812374 + 4 NA intron (NM_133170, intron 2 of 31) L1MB4|LINE|L1 126796 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 831-7 chr11 63399914 63400260 + 4 NA intron (NM_080866, intron 6 of 9) L1M1|LINE|L1 30302 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 545-21 chr10 34058929 34059198 + 4 NA Intergenic Intergenic -286383 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 1253-6 chr20 8895004 8895570 + 4 NA Intergenic Intergenic 64102 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 682-11 chr10 76574088 76574464 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -313768 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 641-51 chr18 14023712 14023976 + 4 NA Intergenic Intergenic -108137 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 1501-3 chr6 155925573 155926233 + 4 NA Intergenic L1MB8|LINE|L1 -20894 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 311-455 chr6 164254208 164254328 + 4 NA Intergenic Intergenic 567795 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 639-94 chr5 46169722 46170024 + 4 NA Intergenic ALR/Alpha|Satellite|centr -473493 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 730-35 chr2 223451112 223451314 + 4 NA Intergenic Intergenic 151148 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 607-95 chr3 20822348 20822527 + 4 NA Intergenic Intergenic 479969 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 1713 chr10 39222846 39223579 + 4 NA Intergenic ALR/Alpha|Satellite|centr 526616 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 762-31 chr19 37859729 37860062 + 4 NA Intergenic Intergenic -4699 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 951-26 chr5 89554312 89554698 + 4 NA Intergenic Intergenic 462215 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 652-81 chr3 106831823 106832197 + 4 NA Intergenic Intergenic 408628 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 398-314 chr7 10645984 10646194 + 4 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -56587 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 1292-5 chr6 8840271 8840706 + 4 NA Intergenic Intergenic 188279 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 624-67 chr2 104119981 104120154 + 4 NA Intergenic Intergenic 288265 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 359-61 chr10 59652912 59653015 + 4 NA intron (NM_194298, intron 5 of 5) intron (NM_194298, intron 5 of 5) 56928 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 902-14 chr14 68404140 68404538 + 4 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 224448 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 200-201 chr5 15010017 15010103 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -138282 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 758-50 chr21 30568027 30568301 + 4 NA Intergenic MamRep605|LTR?|LTR? -6851 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 775-5 chr1 195145682 195146068 + 4 NA Intergenic Intergenic 942840 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 476-155 chr2 219846749 219846999 + 4 NA Intergenic MLT1N2|LTR|ERVL-MaLR 58015 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 753-38 chr20 48534868 48535109 + 4 NA Intergenic MER66B|LTR|ERV1 175077 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 742-24 chr13 93138532 93138950 + 4 NA Intergenic L1ME3B|LINE|L1 -88066 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 967-4 chr11 78635966 78636483 + 4 NA Intergenic L1M2|LINE|L1 -61360 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 477-260 chr7 53713605 53713786 + 4 NA intron (NR_038371, intron 4 of 5) L1MCc|LINE|L1 98236 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 436-19 chr1 182195255 182195429 + 4 NA Intergenic L2a|LINE|L2 118719 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 807-19 chr14 87311548 87311982 + 4 NA Intergenic Intergenic 343529 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 1347-2 chr16 46399660 46400165 + 4 NA Intergenic Intergenic 169185 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 603-168 chr8 118950613 118950834 + 4 NA intron (NM_002546, intron 1 of 4) intron (NM_002546, intron 1 of 4) 1162 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 677-60 chr4 314472 314796 + 4 NA Intergenic L1P4|LINE|L1 -9160 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 585-109 chr4 71667889 71668132 + 4 NA Intergenic MER34C2|LTR|ERV1 116069 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 1195-9 chr3 26285471 26286064 + 4 NA Intergenic LTR48B|LTR|ERV1 -337039 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 758-27 chr15 67354404 67354688 + 4 NA intron (NM_001031715, intron 6 of 20) L1M5|LINE|L1 -99348 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 224-354 chr9 103614061 103614133 + 4 NA Intergenic L1M3e|LINE|L1 -289064 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 528-24 chr1 233416456 233416603 + 4 NA Intergenic Intergenic 88805 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 2055 chr3 137501399 137502264 + 4 NA Intergenic L1PBa|LINE|L1 -262484 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 698-90 chr9 30836625 30836902 + 4 NA Intergenic L1MC1|LINE|L1 -428309 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 660-3 chr1 97594039 97594263 + 4 NA intron (NM_000110, intron 9 of 22) intron (NM_000110, intron 9 of 22) -202770 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 974-5 chr15 69735442 69735823 + 4 NA Intergenic Intergenic -99602 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 508-174 chr4 103846658 103846879 + 4 NA Intergenic L1PA8|LINE|L1 -126783 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 700-4 chr1 106362443 106362641 + 4 NA Intergenic L1MD2|LINE|L1 -334289 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 760-24 chr18 7286684 7287060 + 4 NA Intergenic MLT2B2|LTR|ERVL 55768 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 591-5 chr1 60536719 60536893 + 4 NA intron (NR_146508, intron 6 of 7) MLT1C|LTR|ERVL-MaLR 85879 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 801-58 chr8 72458761 72459052 + 4 NA Intergenic L1MCa|LINE|L1 -78319 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 706-16 chr12 37742692 37742953 + 4 NA Intergenic ALR/Alpha|Satellite|centr -573952 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 638-115 chr5 22716921 22717145 + 4 NA intron (NM_004061, intron 1 of 14) Tigger3b|DNA|TcMar-Tigger 136311 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 1866-2 chr22 43652790 43653689 + 4 NA intron (NM_198856, intron 15 of 29) L1MEg|LINE|L1 136985 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 659-132 chrX 41899787 41900137 + 4 NA intron (NM_003688, intron 1 of 26) L1M2|LINE|L1 23072 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 548-132 chr20 14632506 14632788 + 4 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) 78263 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 647-11 chr10 20450329 20450627 + 4 NA Intergenic Intergenic -101492 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 729-14 chr11 25325900 25326274 + 4 NA Intergenic Intergenic 829034 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 776-37 chr4 45266888 45267394 + 4 NA Intergenic Intergenic -540507 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 596-7 chr1 106844693 106844887 + 4 NA Intergenic L2a|LINE|L2 26551 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 620-143 chr8 79157987 79158211 + 4 NA Intergenic MIRc|SINE|MIR -174089 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 814-27 chr17 81972118 81972490 + 4 NA Intergenic AluSx3|SINE|Alu -5325 NM_024083 79058 Hs.298351 NM_024083 ENSG00000169696 ASPSCR1 ASPCR1|ASPL|ASPS|RCC17|TUG|UBXD9|UBXN9 ASPSCR1 tether for SLC2A4, UBX domain containing protein-coding 780-62 chr8 10008029 10008431 + 4 NA Intergenic L1MB4|LINE|L1 -46062 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 711-15 chr12 81692736 81693065 + 4 NA intron (NM_003625, intron 3 of 32) intron (NM_003625, intron 3 of 32) 65607 NM_001220475 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 384-322 chr6 132699830 132699979 + 4 NA intron (NM_004666, intron 2 of 6) intron (NM_004666, intron 2 of 6) 14151 NM_004666 8876 Hs.12114 NM_004666 ENSG00000112299 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 320-352 chr3 85736168 85736310 + 4 NA intron (NM_001256504, intron 3 of 10) L2a|LINE|L2 9757 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 936-18 chr20 6209628 6210027 + 4 NA Intergenic L1MEd|LINE|L1 -86283 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 1210 chr10 43557377 43557820 + 4 NA exon (NM_001099284, exon 3 of 3) exon (NM_001099284, exon 3 of 3) 10861 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 514-203 chr4 94024759 94025010 + 4 NA Intergenic L1PA3|LINE|L1 182672 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 944-5 chr10 112865269 112865736 + 4 NA Intergenic L1MC5a|LINE|L1 42006 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 1252 chr1 40499125 40499670 + 4 NA Intergenic Intergenic -9322 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 618-67 chr2 151863833 151864051 + 4 NA intron (NM_000726, intron 9 of 13) intron (NM_000726, intron 9 of 13) -35521 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 940-27 chr5 3581747 3582178 + 4 NA Intergenic Intergenic -13870 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 1115-6 chr16 61883247 61883619 + 4 NA intron (NM_001796, intron 3 of 11) MER113|DNA|hAT-Charlie 153005 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 563-144 chr5 2209882 2210115 + 4 NA Intergenic Intergenic 102203 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 1017-25 chr8 129218103 129218689 + 4 NA intron (NR_033916, intron 2 of 2) LTR1A1|LTR|ERV1 22844 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 790-58 chr8 139075943 139076306 + 4 NA Intergenic LTR41|LTR|ERVL -162083 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 701-57 chr21 30765567 30765881 + 4 NA Intergenic Intergenic -10296 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 420-68 chr12 78723306 78723451 + 4 NA Intergenic Intergenic -140604 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 627-28 chr14 43912913 43913169 + 4 NA Intergenic Intergenic 594242 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 659-46 chr19 33358732 33359037 + 4 NA Intergenic L2b|LINE|L2 -14825 NM_001806 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT enhancer binding protein gamma protein-coding 978-19 chr7 84967604 84968079 + 4 NA Intergenic Intergenic 154090 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 1250 chr15 60889529 60890220 + 4 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 208305 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 770-61 chr5 137365198 137365455 + 4 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 134000 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 1189 chr14 41821196 41821560 + 4 NA intron (NM_001330106, intron 2 of 4) L1PB4|LINE|L1 214522 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1721-2 chr5 153940497 153941076 + 4 NA Intergenic MER4B|LTR|ERV1 -41799 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 796-24 chr19 29455083 29455335 + 4 NA intron (NR_040029, intron 1 of 9) ERV3-16A3_I-int|LTR|ERVL 70543 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 1037-6 chr17 70614400 70614964 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 445147 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 856-12 chr13 78491108 78491458 + 4 NA intron (NR_047001, intron 3 of 5) L1ME3A|LINE|L1 -104839 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 607-17 chr10 10258867 10259258 + 4 NA Intergenic LTR41|LTR|ERVL 200340 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 1444-7 chr8 129048269 129048857 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger -82562 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 1096-15 chr5 45974290 45974714 + 4 NA Intergenic ALR/Alpha|Satellite|centr -278122 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 764-72 chr9 79698887 79699207 + 4 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) -125483 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 895-31 chr5 3095711 3096108 + 4 NA Intergenic Intergenic -81926 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 1006-5 chr12 18381039 18381577 + 4 NA intron (NM_001288774, intron 13 of 32) intron (NM_001288774, intron 13 of 32) 119768 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 672-14 chr10 125546027 125546212 + 4 NA Intergenic LTR16A2|LTR|ERVL -28252 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 936-35 chr9 32671075 32671467 + 4 NA Intergenic Charlie4z|DNA|hAT-Charlie -35602 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 1001-10 chr19 36722487 36723004 + 4 NA intron (NM_001363651, intron 4 of 4) intron (NM_001363651, intron 4 of 4) 19064 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 686-49 chr20 23220265 23220604 + 4 NA Intergenic L1PB1|LINE|L1 -87798 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 388-257 chr4 115186961 115187140 + 4 NA Intergenic Intergenic -73430 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 983-13 chr3 34642359 34642966 + 4 NA Intergenic Intergenic 751361 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 951-10 chr15 60655445 60656009 + 4 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -25842 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 798-47 chr5 19212875 19213325 + 4 NA Intergenic L1MA3|LINE|L1 673172 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 887 chr1 104615821 104616169 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 542972 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 652-12 chr10 4874168 4874404 + 4 NA intron (NR_026743, intron 10 of 10) L2a|LINE|L2 41987 NR_026743 389932 Hs.631812 NR_026743 AKR1C6P TAKR aldo-keto reductase family 1 member C6, pseudogene pseudo 542-144 chr3 165360867 165361047 + 4 NA intron (NR_125764, intron 1 of 5) L1PA4|LINE|L1 153997 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 785-39 chr4 62413656 62414044 + 4 NA Intergenic Intergenic -252085 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 479-264 chr8 135062214 135062436 + 4 NA Intergenic Intergenic -171806 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 616-106 chr3 70784849 70785063 + 4 NA Intergenic Intergenic 279968 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 760-58 chr5 28355782 28355973 + 4 NA Intergenic LTR52|LTR|ERVL -68212 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 776-44 chr5 46289505 46289971 + 4 NA Intergenic ALR/Alpha|Satellite|centr -593358 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 610-90 chr2 147070718 147070965 + 4 NA Intergenic Intergenic 483784 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 765-20 chr15 24587976 24588276 + 4 NA TTS (NR_026646) TTS (NR_026646) 29969 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 508-197 chr6 1028136 1028289 + 4 NA intron (NR_027116, intron 1 of 3) intron (NR_027116, intron 1 of 3) 73120 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 652-50 chr16 63612186 63612359 + 4 NA Intergenic L1M4b|LINE|L1 1509791 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 613-102 chr5 27745137 27745412 + 4 NA Intergenic L1PA17|LINE|L1 272982 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 940-36 chr7 56660645 56661180 + 4 NA Intergenic (AGAA)n|Simple_repeat|Simple_repeat -122782 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 1194 chr15 81993462 81994026 + 4 NA Intergenic L1M1|LINE|L1 52274 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 920-19 chr20 52251554 52251936 + 4 NA Intergenic L1MB5|LINE|L1 -59760 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 594-128 chr6 99635900 99636106 + 4 NA Intergenic L1MC4|LINE|L1 29229 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 357-429 chr8 33296395 33296575 + 4 NA Intergenic LTR49|LTR|ERV1 176661 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 601-55 chr17 27180146 27180405 + 4 NA Intergenic ALR/Alpha|Satellite|centr -91034 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 670-118 chr8 53017116 53017446 + 4 NA Intergenic L1MB5|LINE|L1 77373 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 522-69 chr12 112774110 112774283 + 4 NA intron (NM_001347952, intron 1 of 21) (AT)n|Simple_repeat|Simple_repeat -17342 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 322-553 chr8 136874986 136875114 + 4 NA intron (NR_147196, intron 4 of 5) LTR16E1|LTR|ERVL 344252 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 399-244 chr5 35867922 35868043 + 4 NA intron (NR_120485, intron 3 of 5) MLT2C2|LTR|ERVL 11091 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 631-16 chr10 5391757 5392027 + 4 NA Intergenic Intergenic 12936 NM_024803 79861 Hs.163079 NM_024803 ENSG00000178462 TUBAL3 - tubulin alpha like 3 protein-coding 778-16 chr11 66349035 66349324 + 4 NA intron (NR_135761, intron 1 of 1) intron (NR_135761, intron 1 of 1) 1188 NR_135761 102724064 Hs.614641 NR_135761 ENSG00000255468 LOC102724064 - uncharacterized LOC102724064 ncRNA 840-2 chr1 185009620 185010014 + 4 NA Intergenic L2c|LINE|L2 8290 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 421-84 chr14 68411710 68411866 + 4 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 216999 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 747-75 chr9 107465383 107465723 + 4 NA intron (NR_121581, intron 1 of 7) intron (NR_121581, intron 1 of 7) 1032 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 1184 chr1 49295128 49295601 + 4 NA intron (NR_136623, intron 2 of 12) L2c|LINE|L2 37953 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 556-110 chr2 160754812 160755032 + 4 NA Intergenic L1MEd|LINE|L1 -261115 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 558-22 chr10 75254175 75254357 + 4 NA Intergenic L1MEd|LINE|L1 -18309 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 446-175 chr22 43525024 43525224 + 4 NA intron (NR_046563, intron 2 of 2) L1MCa|LINE|L1 8870 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 643-5 chr1 111080398 111080611 + 4 NA Intergenic L1M2|LINE|L1 -58879 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 1065-12 chr6 169556329 169556947 + 4 NA intron (NR_146875, intron 19 of 20) L1ME2|LINE|L1 145391 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 662-92 chr8 16942707 16943011 + 4 NA Intergenic L1M1|LINE|L1 59486 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 623-20 chr11 43296693 43296996 + 4 NA Intergenic Intergenic -15152 NM_001243747 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 762-60 chr6 54944863 54945163 + 4 NA TTS (NM_001010872) TTS (NM_001010872) 98242 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 529-52 chr12 91757519 91757709 + 4 NA Intergenic L1ME3G|LINE|L1 384099 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 613-44 chr17 67194773 67195006 + 4 NA intron (NM_001330447, intron 8 of 32) MIRb|SINE|MIR -49887 NR_136398 101928021 Hs.569824 NR_136398 LOC101928021 - uncharacterized LOC101928021 ncRNA 375-290 chr4 72591841 72591991 + 4 NA Intergenic Intergenic -22695 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 541-183 chr5 43785851 43786082 + 4 NA Intergenic Intergenic -182736 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 1244-9 chr6 168773943 168774386 + 4 NA Intergenic L1M4b|LINE|L1 190218 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 692-84 chr6 66087838 66088163 + 4 NA Intergenic Intergenic 300121 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 671-52 chr20 117440 117732 + 4 NA Intergenic L1PA15-16|LINE|L1 -25004 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 820-59 chr7 111330576 111330985 + 4 NA intron (NM_032549, intron 3 of 5) L1MA7|LINE|L1 231511 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 752-44 chr20 39206265 39206516 + 4 NA Intergenic MIRb|SINE|MIR 18358 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 1235-5 chr7 64704731 64705430 + 4 NA intron (NM_016220, intron 6 of 6) L1M4c|LINE|L1 26016 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 816-13 chr16 10193090 10193450 + 4 NA Intergenic MIRb|SINE|MIR -10362 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 700-97 chr8 122332851 122333121 + 4 NA Intergenic Intergenic 235658 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1744 chr12 18522432 18523148 + 4 NA intron (NM_001288774, intron 24 of 32) L1M3b|LINE|L1 214719 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 526-185 chr4 99935125 99935310 + 4 NA intron (NM_001031723, intron 1 of 7) HAL1M8|LINE|L1 11401 NM_001278311 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 1264-4 chr14 45335053 45335561 + 4 NA Intergenic AluSz|SINE|Alu -82105 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 1154-5 chr2 22769135 22769681 + 4 NA Intergenic L1ME3A|LINE|L1 232929 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 1058-17 chr6 77947055 77947645 + 4 NA Intergenic L1PA15|LINE|L1 294311 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 740-64 chr5 98502162 98502440 + 4 NA Intergenic Intergenic -266331 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 925-31 chr7 53881749 53882145 + 4 NA Intergenic L1M5|LINE|L1 -70016 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 720-50 chr2 228334709 228334987 + 4 NA Intergenic Intergenic -153161 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 494-67 chr14 67377159 67377328 + 4 NA intron (NM_004094, intron 4 of 7) L2b|LINE|L2 16915 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 1718-2 chr5 137041694 137042590 + 4 NA intron (NM_004598, intron 6 of 10) L1MC3|LINE|L1 -86055 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 582-87 chr20 39711896 39712048 + 4 NA Intergenic L1MA1|LINE|L1 -292489 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 783-9 chr1 247273642 247273871 + 4 NA Intergenic Intergenic 17684 NR_160309 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 1085-13 chr3 136904903 136905402 + 4 NA intron (NM_001291999, intron 1 of 3) AluSx3|SINE|Alu -25350 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 1581-3 chr15 58253515 58254284 + 4 NA Intergenic Intergenic 115518 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 1125-13 chr5 66520407 66520858 + 4 NA Intergenic L1MEg|LINE|L1 -9028 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 1056-14 chr5 11281860 11282384 + 4 NA intron (NM_001288715, intron 8 of 20) MLT1G1|LTR|ERVL-MaLR 306795 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 449-242 chr6 125596733 125596961 + 4 NA Intergenic Intergenic -77506 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 1920 chr10 41879145 41879982 + 4 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 488482 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 889-16 chr17 59795626 59795892 + 4 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -45507 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 791-72 chr8 144930224 144930605 + 4 NA TTS (NM_001029976) TTS (NM_001029976) 20466 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 861-35 chr8 135017420 135017787 + 4 NA Intergenic Intergenic 167668 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 848-17 chr18 1185902 1186248 + 4 NA Intergenic MER2|DNA|TcMar-Tigger 173554 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 294-311 chr3 147366857 147367033 + 4 NA Intergenic Intergenic 25485 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 1928 chr8 126599857 126600950 + 4 NA Intergenic AluSx1|SINE|Alu -41925 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 1714-3 chr7 28971955 28972706 + 4 NA Intergenic L1ME4b|LINE|L1 -7637 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 539-94 chr17 70556234 70556412 + 4 NA Intergenic L1MA5|LINE|L1 386788 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 554-175 chr5 80423037 80423261 + 4 NA intron (NR_146172, intron 2 of 20) L1PA5|LINE|L1 15085 NR_146173 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 682-14 chr11 47314987 47315300 + 4 NA intron (NM_130476, intron 26 of 32) intron (NM_130476, intron 26 of 32) 37559 NM_000256 4607 Hs.524906 NM_000256 ENSG00000134571 MYBPC3 CMD1MM|CMH4|FHC|LVNC10|MYBP-C myosin binding protein C, cardiac protein-coding 1396-12 chr9 80670164 80670646 + 4 NA Intergenic L1MA4A|LINE|L1 695382 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 626-123 chr6 38748760 38748995 + 4 NA intron (NM_001371, intron 7 of 91) L3|LINE|CR1 33566 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 539-22 chr10 47445792 47446051 + 4 NA Intergenic L1M2|LINE|L1 -31446 NR_134499 105378292 Hs.131331 NR_134499 LOC105378292 - uncharacterized LOC105378292 ncRNA 448-164 chr3 84953112 84953258 + 4 NA Intergenic Intergenic -5804 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 663-62 chr20 23466188 23466362 + 4 NA Intergenic L1M5|LINE|L1 -13399 NM_130794 140880 Hs.128100 NM_080830 ENSG00000125831 CST11 CST8L|CTES2|SC13|dJ322G13.6 cystatin 11 protein-coding 836-44 chr4 179464853 179465196 + 4 NA Intergenic Intergenic -1557088 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 631-37 chr14 48933925 48934227 + 4 NA Intergenic L1MC|LINE|L1 652304 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 1027-16 chr8 71104490 71104934 + 4 NA Intergenic Intergenic 251994 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 652-45 chr15 100479859 100480157 + 4 NA exon (NM_001290342, exon 7 of 13) exon (NM_001290342, exon 7 of 13) 64278 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 925-28 chr5 165864511 165864879 + 4 NA Intergenic Intergenic 1061675 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 1423-3 chr7 3578576 3579123 + 4 NA intron (NM_152744, intron 1 of 44) MER11A|LTR|ERVK 277597 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 415-178 chr3 74581354 74581632 + 4 NA Intergenic L1ME2|LINE|L1 -60353 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 609-19 chr12 5140400 5140677 + 4 NA Intergenic MIRb|SINE|MIR 96659 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 363-186 chr18 4671356 4671526 + 4 NA Intergenic L1PA15|LINE|L1 -216134 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 885-31 chr8 141858575 141858945 + 4 NA Intergenic Intergenic -72447 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 763-13 chr12 44385651 44385936 + 4 NA intron (NM_001286213, intron 6 of 6) intron (NM_001286213, intron 6 of 6) 489868 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 412-325 chr8 70930980 70931144 + 4 NA Intergenic Intergenic 261723 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 452-86 chr14 92790121 92790314 + 4 NA Intergenic FLAM_C|SINE|Alu -4088 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 546-147 chr3 61604624 61604843 + 4 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 43162 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 401-95 chr14 63981530 63981711 + 4 NA intron (NM_015180, intron 16 of 114) intron (NM_015180, intron 16 of 114) 113505 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 682-88 chr6 56939611 56939862 + 4 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) 15094 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 548-31 chr11 12382578 12382776 + 4 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 5106 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 262-400 chr7 53456742 53456831 + 4 NA Intergenic L1MC1|LINE|L1 355145 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 636-27 chr12 29701669 29701969 + 4 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 82123 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 705-49 chr2 36054709 36055157 + 4 NA Intergenic Intergenic 300637 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 502-8 chr1 75391153 75391302 + 4 NA intron (NM_001320283, intron 1 of 21) L1PA17|LINE|L1 219887 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 684-84 chr4 33969130 33969346 + 4 NA intron (NR_125902, intron 3 of 4) L1MA7|LINE|L1 70655 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 1563 chr11 111482520 111483366 + 4 NA intron (NM_017589, intron 5 of 5) L1MD1|LINE|L1 -27659 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 584-131 chr5 36481856 36482035 + 4 NA Intergenic Intergenic -124410 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 482-106 chr18 22281068 22281232 + 4 NA Intergenic Intergenic 111713 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 1161-3 chr17 70980658 70981005 + 4 NA Intergenic Intergenic 221348 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 935-30 chr4 149629567 149629919 + 4 NA intron (NM_001363507, intron 7 of 13) intron (NM_001363507, intron 7 of 13) 186100 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 573-149 chr5 109012422 109012598 + 4 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 87904 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 578-33 chr10 131347431 131347690 + 4 NA Intergenic Intergenic -35839 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 410-276 chr7 39077639 39077902 + 4 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -64203 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 1379 chr1 176453253 176453993 + 4 NA Intergenic L2c|LINE|L2 -9552 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 769-58 chr6 86112362 86112630 + 4 NA Intergenic L1MA2|LINE|L1 -433763 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 412-33 chr10 75944768 75944927 + 4 NA intron (NR_131178, intron 3 of 7) L1MEf|LINE|L1 162086 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 619-136 chr9 80635164 80635429 + 4 NA Intergenic L1MCb|LINE|L1 660273 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 404-317 chr8 89572444 89572590 + 4 NA Intergenic L2a|LINE|L2 185194 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 940-8 chr16 54296878 54297382 + 4 NA Intergenic Intergenic -10343 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 833-25 chr3 118150094 118150412 + 4 NA Intergenic L1MA7|LINE|L1 -459328 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 584-111 chr4 18422571 18422821 + 4 NA Intergenic Intergenic -400821 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 719-55 chr3 187240145 187240420 + 4 NA intron (NR_033519, intron 9 of 9) Charlie20a|DNA|hAT-Charlie -32653 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 713-47 chr20 42890601 42890871 + 4 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -78007 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 524-24 chr10 23082873 23083114 + 4 NA Intergenic Intergenic -12586 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 373-326 chr5 92512402 92512566 + 4 NA Intergenic L1MB8|LINE|L1 1058859 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 2024 chr8 129520899 129521588 + 4 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -37101 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 662-23 chr14 49433294 49433571 + 4 NA Intergenic L1PA15|LINE|L1 152948 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 538-18 chr1 179278569 179278817 + 4 NA Intergenic L1M4b|LINE|L1 -15021 NM_001252511 6646 Hs.445588 NM_003101 ENSG00000057252 SOAT1 ACACT|ACAT|ACAT-1|ACAT1|SOAT|STAT sterol O-acyltransferase 1 protein-coding 726-19 chr12 63913513 63913822 + 4 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 68967 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 568-46 chr14 38491748 38492015 + 4 NA Intergenic L1MCa|LINE|L1 -235788 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 283-371 chr5 92563903 92564023 + 4 NA Intergenic Intergenic 1007380 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 935-36 chr7 4420621 4421033 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -261468 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1413 chr22 49217504 49218188 + 4 NA Intergenic L1M4b|LINE|L1 325620 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 803-38 chr4 104650640 104651076 + 4 NA intron (NR_125926, intron 4 of 9) L1MA7|LINE|L1 -155964 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 1268-9 chr3 127330554 127331118 + 4 NA intron (NR_110147, intron 3 of 4) L1MA8|LINE|L1 -42790 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 402-78 chr14 43158145 43158271 + 4 NA Intergenic Intergenic 1349075 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 852-47 chr8 88178078 88178428 + 4 NA intron (NM_005941, intron 3 of 9) L1MC2|LINE|L1 149230 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 622-40 chr17 52701815 52702007 + 4 NA Intergenic Intergenic -160210 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 173-66 chr2 48694187 48694237 + 4 NA intron (NM_000233, intron 10 of 10) intron (NM_000233, intron 10 of 10) 61512 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 775-91 chrUn_KI270442v1 68596 68995 + 4 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 634-86 chr2 226496044 226496319 + 4 NA Intergenic Intergenic 162612 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 570-18 chr1 247436572 247436813 + 4 NA intron (NM_001127462, intron 5 of 7) L3|LINE|CR1 15290 NM_001004492 127623 Hs.446999 NM_001004492 ENSG00000177535 OR2B11 - olfactory receptor family 2 subfamily B member 11 protein-coding 741-48 chr4 179187076 179187372 + 4 NA Intergenic Intergenic -1279288 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 569-165 chr7 28223550 28223761 + 4 NA intron (NR_034097, intron 3 of 3) LTR102_Mam|LTR|ERVL -42860 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 1116-7 chr2 114085090 114085675 + 4 NA Intergenic Charlie4z|DNA|hAT-Charlie -105398 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 522-95 chr16 17968770 17968923 + 4 NA Intergenic Intergenic 363816 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 710-98 chr9 88343565 88343924 + 4 NA Intergenic L1MCa|LINE|L1 -44700 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 895-7 chr12 73184482 73184890 + 4 NA intron (NR_110130, intron 2 of 3) L1PA10|LINE|L1 25496 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 909-2 chr1 74018577 74018981 + 4 NA Intergenic Intergenic 179397 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 689-44 chr2 47288847 47289152 + 4 NA intron (NR_110207, intron 1 of 2) intron (NR_110207, intron 1 of 2) -46316 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 770-43 chr2 136201483 136201934 + 4 NA Intergenic L1ME4a|LINE|L1 -83553 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 390-155 chr18 53379862 53380009 + 4 NA intron (NM_005215, intron 15 of 28) intron (NM_005215, intron 15 of 28) 142834 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 739-3 chr1 172008472 172008874 + 4 NA intron (NM_001278252, intron 4 of 14) L1MEf|LINE|L1 -130135 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 829-33 chr5 101012005 101012326 + 4 NA Intergenic Intergenic -108883 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 674-39 chr17 69809905 69810194 + 4 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -151658 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 510-131 chr2 15737499 15737725 + 4 NA Intergenic Intergenic 46830 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 546-214 chr7 5106157 5106314 + 4 NA Intergenic AluSz|SINE|Alu 34175 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 496-170 chr3 33002880 33003079 + 4 NA intron (NM_001079811, intron 15 of 15) intron (NM_001079811, intron 15 of 15) 51335 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 478-177 chr3 28078675 28078858 + 4 NA Intergenic MIRb|SINE|MIR -162853 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 653-47 chr16 9388268 9388510 + 4 NA intron (NR_135195, intron 1 of 2) intron (NR_135195, intron 1 of 2) 32801 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 1370-3 chr14 48419166 48419819 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -624478 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 946-5 chr12 111352202 111352572 + 4 NA Intergenic Intergenic 16708 NM_001177997 144717 Hs.173088 NM_144671 ENSG00000198324 PHETA1 FAM109A|IPIP27A|SES1 PH domain containing endocytic trafficking adaptor 1 protein-coding 721-88 chr9 26190810 26191157 + 4 NA Intergenic L1M3e|LINE|L1 124308 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 852-11 chr11 79092675 79093037 + 4 NA intron (NM_001098816, intron 4 of 33) MIRc|SINE|MIR 309253 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 1144-2 chr10 23953312 23953974 + 4 NA intron (NM_001098500, intron 1 of 18) MIR|SINE|MIR -255148 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 980-21 chr9 27979819 27980303 + 4 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -406195 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 603-166 chr8 108506467 108506775 + 4 NA Intergenic MIRc|SINE|MIR 62997 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 1051-5 chr12 37924840 37925209 + 4 NA Intergenic ALR/Alpha|Satellite|centr -391750 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1425-3 chr4 46526102 46526515 + 4 NA Intergenic MIR|SINE|MIR -136180 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 488-284 chr9 23130372 23130618 + 4 NA Intergenic L1M5|LINE|L1 484295 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 960-38 chr7 63950341 63950787 + 4 NA Intergenic Intergenic -48242 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 726-13 chr12 2308664 2308966 + 4 NA intron (NM_199460, intron 3 of 49).2 L1MA9|LINE|L1 39039 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 1455 chr10 79953302 79954130 + 4 NA Intergenic L1M2|LINE|L1 -4611 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 772-16 chr12 72250989 72251335 + 4 NA Intergenic L1MD2|LINE|L1 -21587 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 634-12 chr1 241525662 241525918 + 4 NA Intergenic Intergenic -6005 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 907-8 chr15 54849137 54849617 + 4 NA Intergenic Intergenic -207370 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 842-21 chr2 65777520 65777936 + 4 NA Intergenic Intergenic -345129 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 604-71 chr18 73220324 73220502 + 4 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 44085 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 841-44 chr9 30584551 30584931 + 4 NA Intergenic L1PA10|LINE|L1 -176287 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 665-53 chr2 213481322 213481505 + 4 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 196949 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 1209-3 chr12 133122753 133123221 + 4 NA intron (NM_001277291, intron 1 of 1) intron (NM_001277291, intron 1 of 1) 7486 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 1116-12 chr4 99798959 99799414 + 4 NA Intergenic Intergenic -17641 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 988-11 chr16 78595928 78596353 + 4 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 496486 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 716-51 chr3 111372708 111373017 + 4 NA Intergenic L1PB1|LINE|L1 -169335 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 1321-8 chr5 82900465 82901048 + 4 NA Intergenic Intergenic -40920 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 811-6 chr11 36925665 36926001 + 4 NA Intergenic Intergenic -327554 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 782-51 chr4 121438643 121439027 + 4 NA Intergenic L1M2|LINE|L1 -57817 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 697-59 chr5 15796337 15796580 + 4 NA intron (NM_001278317, intron 2 of 3) MER58A|DNA|hAT-Charlie -138724 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 402-230 chr4 32641559 32641693 + 4 NA Intergenic Intergenic 290588 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 535-212 chr5 163663603 163663854 + 4 NA Intergenic Intergenic 158109 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 705-80 chr5 86805955 86806300 + 4 NA Intergenic MER21C|LTR|ERVL 59309 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 666-19 chr12 4258198 4258443 + 4 NA intron (NR_149145, intron 1 of 3) L1M4|LINE|L1 -15442 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 693-59 chr2 122730227 122730422 + 4 NA Intergenic (TTTATA)n|Simple_repeat|Simple_repeat 343157 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 713-85 chrX 82527659 82527914 + 4 NA Intergenic L1M3e|LINE|L1 -980504 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 266-53 chr10 120035893 120035969 + 4 NA Intergenic Intergenic 77418 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 645-16 chr11 50448044 50448323 + 4 NA Intergenic ALR/Alpha|Satellite|centr 39036 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 897-29 chr4 145992950 145993472 + 4 NA Intergenic L1MCa|LINE|L1 -54388 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 1128-5 chr11 84174722 84175211 + 4 NA intron (NM_001142700, intron 1 of 19) MIRb|SINE|MIR 98314 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 563-96 chr2 190567121 190567400 + 4 NA Intergenic HAL1|LINE|L1 -32538 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 532-217 chr5 169869870 169870029 + 4 NA intron (NM_001129891, intron 3 of 3) intron (NM_001129891, intron 3 of 3) 110546 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 740-46 chr2 212040928 212041310 + 4 NA intron (NM_001042599, intron 2 of 26) MIR|SINE|MIR 385241 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 2678 chr5 131928198 131929523 + 4 NA intron (NM_001303622, intron 5 of 12) L1MB1|LINE|L1 16803 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 821-41 chr5 1680951 1681237 + 4 NA Intergenic MSTB|LTR|ERVL-MaLR 27774 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 1007-8 chr3 88013026 88013549 + 4 NA Intergenic L1ME1|LINE|L1 30711 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 476-191 chr4 33190075 33190254 + 4 NA Intergenic L1MC4|LINE|L1 839126 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 520-298 chr8 107136240 107136403 + 4 NA Intergenic Intergenic 200194 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 538-63 chr13 102474636 102474845 + 4 NA Intergenic Intergenic -72297 NM_001321947 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 911-10 chr15 98058983 98059427 + 4 NA Intergenic L1MD1|LINE|L1 29548 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 336-300 chr2 183578408 183578567 + 4 NA Intergenic Intergenic 454044 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 693-106 chr8 134934260 134934464 + 4 NA Intergenic Intergenic 84427 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 694-26 chr12 29261919 29262219 + 4 NA intron (NM_001271784, intron 1 of 10) L1MA3|LINE|L1 38403 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 1153-5 chr14 43144739 43145130 + 4 NA Intergenic Intergenic 1362349 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1196-2 chr10 113648968 113649403 + 4 NA intron (NM_001322945, intron 9 of 40) intron (NM_001322945, intron 9 of 40) 14856 NM_001322945 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 664-50 chr2 29301184 29301473 + 4 NA intron (NM_004304, intron 8 of 28) L2c|LINE|L2 -77428 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 621-33 chr14 78388565 78388851 + 4 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -15011 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 608-92 chr22 27010441 27010639 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR 49978 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 812-9 chr11 76961193 76961578 + 4 NA intron (NM_001300954, intron 3 of 10) L1MC4|LINE|L1 -73013 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 832-18 chr20 203014 203507 + 4 NA Intergenic Intergenic -13549 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 853-9 chr15 48706407 48706744 + 4 NA Intergenic L1MA6|LINE|L1 -60787 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 719-41 chr2 135375735 135376188 + 4 NA intron (NM_001286569, intron 3 of 21) MLT1C|LTR|ERVL-MaLR 154624 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 686-53 chr21 17143195 17143462 + 4 NA Intergenic Intergenic -295562 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 352-162 chr15 79226959 79227166 + 4 NA intron (NR_038997, intron 1 of 1) ERV3-16A3_I-int|LTR|ERVL 17274 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 620-72 chr2 221194091 221194324 + 4 NA Intergenic L1MA8|LINE|L1 378097 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 476-238 chr6 49370898 49371109 + 4 NA Intergenic Intergenic 92250 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 432-192 chr3 191771084 191771243 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 310000 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 508-92 chr19 37163256 37163404 + 4 NA intron (NM_001288800, intron 2 of 4) L1M7|LINE|L1 9106 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 318-16 chr1 67924568 67924676 + 4 NA intron (NR_040077, intron 1 of 9) MER57A-int|LTR|ERV1 -91155 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 556-236 chr8 137983836 137984094 + 4 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 99580 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 578-94 chr2 147593496 147593692 + 4 NA Intergenic Intergenic -250923 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 453-279 chr8 82622154 82622297 + 4 NA Intergenic Intergenic -289879 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 456-12 chr1 116797275 116797449 + 4 NA Intergenic LTR33|LTR|ERVL 42932 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 454-58 chr11 106904716 106904870 + 4 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 113683 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 461-114 chr19 28794625 28794790 + 4 NA Intergenic L1MA9|LINE|L1 -67013 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 672-18 chr12 37971428 37971680 + 4 NA Intergenic ALR/Alpha|Satellite|centr -345220 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 580-158 chr5 124228087 124228264 + 4 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 210345 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 638-140 chr6 140965013 140965383 + 4 NA Intergenic Intergenic 281384 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 592-24 chr11 35326390 35326603 + 4 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 93062 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 578-140 chr5 99944259 99944548 + 4 NA Intergenic Intergenic 410413 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 774-71 chr5 67502120 67502546 + 4 NA Intergenic Intergenic 144456 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 662-41 chr19 36726124 36726361 + 4 NA Intergenic L1MDa|LINE|L1 22561 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 552-217 chr8 127342541 127342760 + 4 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -57749 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 1214 chr10 111829405 111829993 + 4 NA Intergenic Intergenic 354066 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 528-122 chr2 4830375 4830632 + 4 NA Intergenic L1PA15|LINE|L1 -174281 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 648-147 chr8 116439014 116439189 + 4 NA Intergenic MIRb|SINE|MIR -114042 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 629-81 chr3 34301906 34302216 + 4 NA Intergenic L1ME3A|LINE|L1 503431 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 404-240 chr4 147835650 147835838 + 4 NA intron (NM_024605, intron 3 of 22) intron (NM_024605, intron 3 of 22) 53149 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 599-14 chr10 68459252 68459529 + 4 NA intron (NM_001080449, intron 4 of 20) L1MB3|LINE|L1 12583 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 904-46 chr8 134347645 134348054 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -250222 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 524-266 chr8 118737310 118737522 + 4 NA Intergenic Intergenic -115453 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 840-44 chr6 124014268 124014687 + 4 NA intron (NM_001040214, intron 1 of 6) L1ME4a|LINE|L1 210612 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 658-13 chr10 34151673 34152024 + 4 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -379168 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 721-80 chr7 51132311 51132610 + 4 NA intron (NM_015198, intron 6 of 12) MIRc|SINE|MIR 184349 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 727-24 chr12 80383405 80383676 + 4 NA Intergenic L1M5|LINE|L1 -60695 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 561-199 chr8 80780936 80781159 + 4 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 93421 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 393-312 chr6 122601922 122602104 + 4 NA intron (NM_181794, intron 3 of 6) intron (NM_181794, intron 3 of 6) -8219 NM_032471 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 528-45 chr11 2568733 2568893 + 4 NA intron (NM_181798, intron 2 of 15) intron (NM_181798, intron 2 of 15) 107359 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 398-302 chr6 120067838 120068010 + 4 NA Intergenic Intergenic 52745 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 711-49 chr4 11876568 11876823 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR 93517 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 1060-4 chr11 36974060 36974542 + 4 NA Intergenic L1M5|LINE|L1 -376022 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 608-123 chr5 97597933 97598243 + 4 NA intron (NR_105028, intron 2 of 3) L1MA7|LINE|L1 93392 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 1022-28 chr9 31691832 31692334 + 4 NA Intergenic Intergenic -310593 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 646-21 chr10 116537102 116537453 + 4 NA Intergenic L1ME1|LINE|L1 -8654 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 878-11 chr12 17780940 17781212 + 4 NA Intergenic Intergenic 107777 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 510-233 chr5 133177302 133177480 + 4 NA Intergenic L1ME3Cz|LINE|L1 125378 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 510-126 chr19 55847360 55847540 + 4 NA intron (NM_134444, intron 1 of 9) L1M5|LINE|L1 -10688 NM_145007 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 786-67 chr8 131663565 131663920 + 4 NA Intergenic MER50B|LTR|ERV1 -240351 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 462-162 chr21 29120049 29120233 + 4 NA intron (NM_001286622, intron 6 of 8) HAL1|LINE|L1 -1849 NM_001371376 847-11 chr11 111028046 111028541 + 4 NA Intergenic L1PB3|LINE|L1 69025 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 306-32 chr1 169294343 169294474 + 4 NA intron (NR_104229, intron 6 of 12) intron (NR_104229, intron 6 of 12) 73389 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 781-51 chr5 88595660 88595897 + 4 NA intron (NR_152235, intron 2 of 3) intron (NR_152235, intron 2 of 3) 71161 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 690 chr1 65734778 65735053 + 4 NA Intergenic L2a|LINE|L2 -57595 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 584-22 chr10 83074083 83074272 + 4 NA Intergenic MER2|DNA|TcMar-Tigger 602912 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 731-40 chr2 84562144 84562519 + 4 NA intron (NM_001370, intron 11 of 76) L1MC4|LINE|L1 45876 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 329-4 chr1 41986104 41986284 + 4 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) 49740 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 679-46 chr18 3403085 3403311 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -8729 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 490-193 chr4 30458139 30458322 + 4 NA Intergenic L2|LINE|L2 -262139 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1268-8 chr2 19768581 19769133 + 4 NA Intergenic L1MB5|LINE|L1 -99997 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 725-29 chr19 27667129 27667507 + 4 NA Intergenic ALR/Alpha|Satellite|centr -126113 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1364-5 chr4 99738965 99739784 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR -77453 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 820-10 chr12 14416352 14416800 + 4 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 31295 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 525-74 chr14 98202232 98202424 + 4 NA Intergenic L3|LINE|CR1 -224204 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 837-27 chr3 106604201 106604543 + 4 NA Intergenic Intergenic 636266 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 664-8 chr1 82493365 82493590 + 4 NA Intergenic Intergenic -409706 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 1005-18 chr5 114871480 114871939 + 4 NA Intergenic L1PA11|LINE|L1 -98296 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 435-215 chr6 3938906 3939102 + 4 NA Intergenic Intergenic -82296 NR_146783 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 1092-17 chr7 109824839 109825341 + 4 NA Intergenic Intergenic 135123 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 643-120 chr8 5803682 5803880 + 4 NA Intergenic Intergenic 602767 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 1048-24 chr8 76970456 76970852 + 4 NA Intergenic Intergenic -3804 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 681-77 chr6 151598601 151598841 + 4 NA intron (NM_025059, intron 9 of 10) intron (NM_025059, intron 9 of 10) -91775 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 646-66 chr2 187029397 187029613 + 4 NA Intergenic L1MA4A|LINE|L1 -180335 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 640-121 chr7 5089726 5090060 + 4 NA Intergenic PRIMA4_LTR|LTR|ERV1 17833 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 852-43 chr6 170007007 170007225 + 4 NA Intergenic Intergenic 44493 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 810-20 chr19 53235063 53235423 + 4 NA TTS (NM_182609) TTS (NM_182609) 19607 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 837-10 chr18 2081141 2081542 + 4 NA Intergenic Intergenic 490164 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 984-14 chr6 62652481 62652890 + 4 NA Intergenic LTR25-int|LTR|ERV1 -366458 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 675-36 chr17 72739821 72740052 + 4 NA intron (NM_001352692, intron 6 of 9) Tigger2b_Pri|DNA|TcMar-Tigger -99464 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 788-14 chr13 61205288 61205574 + 4 NA Intergenic Intergenic -5551 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 566-97 chr2 124534807 124535029 + 4 NA intron (NM_130773, intron 10 of 23) MER41B|LTR|ERV1 509631 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 557-132 chr3 45659650 45659891 + 4 NA intron (NM_014240, intron 2 of 7) intron (NM_014240, intron 2 of 7) 29112 NR_033947 644714 Hs.712889 NR_033947 LIMD1-AS1 - LIMD1 antisense RNA 1 ncRNA 356-76 chr11 29252632 29252761 + 4 NA Intergenic Intergenic -341717 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 465-243 chr5 155610703 155610945 + 4 NA Intergenic Intergenic 597069 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 292-376 chr6 41395024 41395167 + 4 NA Intergenic HAL1|LINE|L1 59487 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 542-176 chr5 113474648 113474884 + 4 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 13687 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 911-2 chr1 209091626 209092018 + 4 NA Intergenic L1ME1|LINE|L1 119368 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 584-175 chr8 135119790 135120021 + 4 NA Intergenic Intergenic -114226 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1077-9 chr22 19684962 19685442 + 4 NA Intergenic L1MDa|LINE|L1 -29301 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 551-111 chr21 31023999 31024327 + 4 NA Intergenic Intergenic 14313 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 1090-9 chr5 27482363 27482847 + 4 NA intron (NR_038848, intron 3 of 4) MIR|SINE|MIR 10313 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 1082-3 chr10 61331123 61331588 + 4 NA Intergenic Intergenic -121284 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 1306-3 chr2 239353744 239354451 + 4 NA intron (NM_006037, intron 1 of 26) intron (NM_006037, intron 1 of 26) -2293 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 855-51 chr8 134246457 134246839 + 4 NA Intergenic L1MA3|LINE|L1 -351423 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 589-98 chr3 164463260 164463545 + 4 NA Intergenic Intergenic -291846 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 1158-5 chr19 37388104 37388631 + 4 NA exon (NM_032453, exon 5 of 5) exon (NM_032453, exon 5 of 5) 17268 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 787-29 chr3 54126937 54127357 + 4 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 4595 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 1050-7 chr18 4170240 4170729 + 4 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -94118 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 707-71 chr4 42151277 42151486 + 4 NA intron (NM_207406, intron 2 of 5) CpG 1274 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 546-236 chr8 91681220 91681470 + 4 NA Intergenic Intergenic 336335 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 528-196 chr5 12642421 12642559 + 4 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) -25369 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 608-167 chr9 108797160 108797356 + 4 NA Intergenic MER52-int|LTR|ERV1 58728 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 560-83 chr2 99547707 99547980 + 4 NA 3' UTR (NM_002285, exon 24 of 24) 3' UTR (NM_002285, exon 24 of 24) -57826 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 543-188 chr4 120562416 120562662 + 4 NA Intergenic Intergenic 360327 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 1598-6 chr8 86687243 86687866 + 4 NA intron (NM_019098, intron 3 of 17) L1MB5|LINE|L1 56121 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 442-198 chr3 139097946 139098164 + 4 NA Intergenic L1MEg|LINE|L1 -6130 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 743-62 chr5 5977706 5977907 + 4 NA Intergenic L2c|LINE|L2 359486 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 1085-14 chr5 25532978 25533636 + 4 NA Intergenic L1M5|LINE|L1 342354 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 662-66 chr4 42974320 42974593 + 4 NA intron (NM_001080476, intron 2 of 3) LTR26|LTR|ERV1 81190 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 563-129 chr3 189677802 189678114 + 4 NA intron (NM_003722, intron 1 of 13) L1PB4|LINE|L1 46569 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 785-48 chr6 14171338 14171744 + 4 NA Intergenic L1MB7|LINE|L1 53769 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 577-5 chr1 57012083 57012371 + 4 NA intron (NM_001365793, intron 12 of 14) intron (NM_001365793, intron 12 of 14) -46087 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 559-147 chr5 100674432 100674646 + 4 NA Intergenic Intergenic 139165 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 715-53 chr3 104376437 104376903 + 4 NA Intergenic MLT1A|LTR|ERVL-MaLR -852554 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 836-19 chr13 72003804 72004093 + 4 NA Intergenic Intergenic -136744 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 660-66 chr3 97467340 97467615 + 4 NA intron (NM_173655, intron 5 of 12) intron (NM_173655, intron 5 of 12) 27870 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 459-59 chr12 3982482 3982653 + 4 NA Intergenic L1MEc|LINE|L1 -109119 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 1466-4 chr2 107744594 107745280 + 4 NA Intergenic HAL1b|LINE|L1 -9175 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 958-8 chr12 59388481 59388833 + 4 NA Intergenic Intergenic -207372 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 860-34 chr3 82796481 82796749 + 4 NA Intergenic Intergenic 810473 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 710-6 chr1 215294213 215294455 + 4 NA Intergenic Intergenic 211597 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 1195-7 chr2 16143925 16144412 + 4 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat 93741 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 810-16 chr16 10097158 10097456 + 4 NA intron (NM_001134408, intron 2 of 13) MER113|DNA|hAT-Charlie 84760 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 381-105 chr14 47995913 47996017 + 4 NA Intergenic Intergenic -200951 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 797-20 chr19 30931401 30931723 + 4 NA Intergenic Intergenic -235948 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 527-103 chr16 20232311 20232497 + 4 NA Intergenic Intergenic 95109 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 713-15 chr11 70750751 70751004 + 4 NA intron (NM_012309, intron 13 of 24) L1MEf|LINE|L1 -89036 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 1066-17 chr6 21011494 21011929 + 4 NA intron (NM_017774, intron 11 of 15) intron (NM_017774, intron 11 of 15) 477254 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 621-12 chr10 5143662 5143989 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL 41362 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 538-193 chr5 41202830 41203131 + 4 NA intron (NM_000065, intron 2 of 17) intron (NM_000065, intron 2 of 17) 10552 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 990-14 chr2 213881788 213882311 + 4 NA intron (NR_047660, intron 10 of 14) L1PA16|LINE|L1 123982 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 709-68 chr4 78740068 78740330 + 4 NA Intergenic L2a|LINE|L2 -36151 NM_017593 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 618-57 chr2 52579038 52579310 + 4 NA Intergenic L1PA15-16|LINE|L1 123441 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 592-167 chr8 32652401 32652583 + 4 NA intron (NM_001322205, intron 1 of 8) intron (NM_001322205, intron 1 of 8) 5403 NM_001322206 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 772-51 chr8 71071969 71072320 + 4 NA Intergenic L1MA7|LINE|L1 284562 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 609-20 chr12 5549115 5549414 + 4 NA Intergenic Intergenic 55132 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 499-142 chr20 6502608 6502800 + 4 NA intron (NR_109953, intron 3 of 3) intron (NR_109953, intron 3 of 3) 75972 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 1231-2 chr11 54898361 54898961 + 4 NA Intergenic ALR/Alpha|Satellite|centr 191829 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 934 chr1 58827027 58827483 + 4 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 42104 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 1032-9 chr14 83450036 83450580 + 4 NA Intergenic MSTB|LTR|ERVL-MaLR 807676 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 578-9 chr1 94613647 94613885 + 4 NA Intergenic Intergenic 70064 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 1213-7 chr2 29671874 29672210 + 4 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -196665 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 364-166 chr17 32724497 32724697 + 4 NA intron (NM_015194, intron 14 of 21) L1MEg|LINE|L1 152527 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 1742 chr1 112104762 112105498 + 4 NA Intergenic (TATAT)n|Simple_repeat|Simple_repeat 114594 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 364-240 chr2 210977194 210977338 + 4 NA Intergenic L1M5|LINE|L1 359695 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 1307-7 chr2 201525662 201526200 + 4 NA intron (NM_001168216, intron 11 of 12) L1PA15|LINE|L1 74191 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 601-89 chr22 47555202 47555458 + 4 NA Intergenic (ATCTAT)n|Simple_repeat|Simple_repeat -68219 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 596-152 chr7 62764329 62764622 + 4 NA Intergenic ALR/Alpha|Satellite|centr 539581 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 806-35 chr20 22094529 22094899 + 4 NA Intergenic L1M4a2|LINE|L1 40624 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 700-10 chr10 56334304 56334501 + 4 NA Intergenic L1M1|LINE|L1 26857 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 774-25 chr14 52357585 52357923 + 4 NA Intergenic L1MC5a|LINE|L1 43442 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 650-12 chr11 27138922 27139192 + 4 NA intron (NR_125767, intron 3 of 4) intron (NR_125767, intron 3 of 4) 79711 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 533-49 chr14 42693480 42693705 + 4 NA Intergenic Intergenic 1086736 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 613-127 chr7 118560038 118560291 + 4 NA Intergenic L1MB7|LINE|L1 335460 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 957-21 chr4 106010305 106010798 + 4 NA intron (NR_125928, intron 3 of 3) L1PB1|LINE|L1 11927 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 502-284 chr8 138436469 138436721 + 4 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 60666 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1144-10 chr6 167723969 167724644 + 4 NA Intergenic L1M5|LINE|L1 -40519 NR_117092 441178 Hs.628956 NM_001025489 ENSG00000203688 LINC02487 - long intergenic non-protein coding RNA 2487 ncRNA 745-63 chr6 61309081 61309491 + 4 NA Intergenic ALR/Alpha|Satellite|centr -264844 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 596-94 chr2 99722528 99722775 + 4 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -232634 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 456-350 chrX 56934047 56934259 + 4 NA Intergenic L1MA2|LINE|L1 61388 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 1164-2 chr17 68608834 68609312 + 4 NA Intergenic L1ME1|LINE|L1 -7706 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 599-88 chr3 108404977 108405163 + 4 NA intron (NM_014981, intron 34 of 41) intron (NM_014981, intron 34 of 41) 93285 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 644-7 chr10 41735911 41736088 + 4 NA Intergenic ALR/Alpha|Satellite|centr 632046 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 588-40 chr14 80275877 80276179 + 4 NA intron (NR_038355, intron 2 of 8) (T)n|Simple_repeat|Simple_repeat -44971 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 474-214 chr4 92824752 92824932 + 4 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 520443 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 857-48 chr6 19151746 19152237 + 4 NA intron (NR_110860, intron 3 of 10) L2c|LINE|L2 28489 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 927-6 chr17 34388300 34388755 + 4 NA Intergenic AluJr4|SINE|Alu -25294 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 918-10 chr15 97725804 97726116 + 4 NA Intergenic L1MEc|LINE|L1 148469 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 775-80 chr7 62658524 62658785 + 4 NA Intergenic ALR/Alpha|Satellite|centr 645402 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 954-29 chr2 227184516 227184849 + 4 NA intron (NM_000091, intron 1 of 51) intron (NM_000091, intron 1 of 51) 20117 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 416-302 chr6 162923063 162923349 + 4 NA intron (NM_001080379, intron 2 of 4) L1MA5|LINE|L1 130955 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 417-184 chr3 154091163 154091350 + 4 NA intron (NR_037901, intron 2 of 3) MLT1F2|LTR|ERVL-MaLR -29747 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 1141 chr1 227697135 227697662 + 4 NA intron (NR_036753, intron 1 of 1) intron (NR_036753, intron 1 of 1) 309 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 1018-14 chr17 77703858 77704350 + 4 NA Intergenic L1MCa|LINE|L1 24455 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 732-20 chr12 7539070 7539374 + 4 NA Intergenic MER101-int|LTR|ERV1 -35404 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 1143-18 chr8 84498445 84499042 + 4 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 83259 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 813-45 chr7 145593116 145593529 + 4 NA Intergenic L1MA7|LINE|L1 -757269 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 811-9 chr11 99179490 99179951 + 4 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 158771 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 881-20 chr19 50059297 50059667 + 4 NA intron (NR_138096, intron 1 of 4) intron (NR_138096, intron 1 of 4) 8893 NR_027257 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 987-9 chr3 78837722 78838220 + 4 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 181488 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 812 chr1 63094795 63095200 + 4 NA Intergenic Intergenic -82526 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 748-27 chr12 15793665 15793903 + 4 NA Intergenic Intergenic -4396 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 802-20 chr14 60387845 60388151 + 4 NA Intergenic L1MD1|LINE|L1 64802 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 540-105 chr19 57121457 57121738 + 4 NA intron (NM_020903, intron 1 of 3) intron (NM_020903, intron 1 of 3) 1456 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 735-24 chr14 72038788 72039029 + 4 NA intron (NM_001370288, intron 2 of 16) L1ME1|LINE|L1 105381 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 764-46 chr22 49529893 49530147 + 4 NA intron (NR_110523, intron 1 of 4) MER49|LTR|ERV1 13446 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 593-157 chr8 133061694 133061938 + 4 NA intron (NM_001045557, intron 1 of 7) intron (NM_001045557, intron 1 of 7) -1462 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 1157-2 chr10 41759035 41759602 + 4 NA Intergenic ALR/Alpha|Satellite|centr 608727 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 622-138 chr8 86050457 86050726 + 4 NA intron (NM_033126, intron 2 of 2) intron (NM_033126, intron 2 of 2) 19077 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 303-315 chr4 71408321 71408434 + 4 NA intron (NM_003759, intron 4 of 22) MIRc|SINE|MIR 69324 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 949-23 chr7 72241934 72242342 + 4 NA intron (NM_001363460, intron 2 of 5) L1MB3|LINE|L1 95253 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 621-112 chr6 166022209 166022401 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -34266 NR_026861 90632 Hs.31917 NR_026860 ENSG00000112541 LINC00473 C6orf176|LNC473|bA142J11.1 long intergenic non-protein coding RNA 473 ncRNA 722-55 chr4 46076660 46076914 + 4 NA intron (NM_173536, intron 3 of 8) intron (NM_173536, intron 3 of 8) 47267 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 500-144 chr2 116591275 116591441 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie -1223333 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 616-42 chr14 48719633 48719832 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 866648 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 665-87 chr7 11493638 11493940 + 4 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 338409 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 417-182 chr3 121686250 121686470 + 4 NA intron (NM_001256486, intron 14 of 21) L4_A_Mam|LINE|RTE-X -25457 NM_005335 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 867-43 chr8 83980110 83980574 + 4 NA Intergenic L1MEg|LINE|L1 -202445 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 671-22 chr12 5984605 5984860 + 4 NA intron (NM_000552, intron 40 of 51) L3|LINE|CR1 -38500 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 912-25 chr2 128943093 128943419 + 4 NA Intergenic Intergenic 78656 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 727-80 chr8 51933292 51933541 + 4 NA Intergenic Intergenic -34230 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 544-87 chr16 64112343 64112633 + 4 NA Intergenic L1MD3|LINE|L1 1009575 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 1103-8 chr2 22323150 22323574 + 4 NA Intergenic L1MEc|LINE|L1 -213117 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 1017-17 chr5 141390398 141390842 + 4 NA TTS (NM_032098) TTS (NM_032098) -1296 NM_032088 9708 Hs.368160 NM_014004 ENSG00000253767 PCDHGA8 PCDH-GAMMA-A8 protocadherin gamma subfamily A, 8 protein-coding 781-47 chr4 45933634 45933939 + 4 NA Intergenic Intergenic 190268 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 582-88 chr20 47692254 47692428 + 4 NA intron (NM_198596, intron 4 of 20) L1MC4a|LINE|L1 93723 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 680-100 chr5 153716069 153716289 + 4 NA intron (NM_000827, intron 11 of 15) MIRb|SINE|MIR 182808 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 571-179 chr8 134132036 134132295 + 4 NA Intergenic LTR106_Mam|LTR|LTR 245669 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 724-60 chr4 126015317 126015737 + 4 NA Intergenic Intergenic 508268 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 1045-13 chr21 18624667 18625004 + 4 NA intron (NR_109925, intron 2 of 3) L1MCa|LINE|L1 61329 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 374-67 chr12 40320769 40320947 + 4 NA intron (NM_198578, intron 34 of 50) intron (NM_198578, intron 34 of 50) -72536 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 792-28 chr19 34695752 34696017 + 4 NA Intergenic AluJr|SINE|Alu 18206 NM_001289189 55900 Hs.436350 NM_018443 ENSG00000089335 ZNF302 HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 zinc finger protein 302 protein-coding 578-162 chr7 103739571 103739803 + 4 NA intron (NM_005045, intron 6 of 64) intron (NM_005045, intron 6 of 64) 249829 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 911-12 chr2 28034738 28035106 + 4 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 38555 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 479-102 chr2 41496134 41496310 + 4 NA Intergenic HUERS-P3-int|LTR|ERV1 -381333 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 1110-14 chr5 37932046 37932471 + 4 NA Intergenic Intergenic -16233 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 387-212 chr21 28590879 28591012 + 4 NA Intergenic Tigger4|DNA|TcMar-Tigger 51627 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 866-3 chr1 172247038 172247536 + 4 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -102452 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 300-133 chr15 80957463 80957551 + 4 NA intron (NR_126328, intron 1 of 2) intron (NR_126328, intron 1 of 2) 32312 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 881-15 chr18 4023042 4023364 + 4 NA intron (NM_001242761, intron 2 of 11) L1ME3G|LINE|L1 60850 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 740-61 chr4 101626363 101626561 + 4 NA Intergenic Intergenic -164145 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 462-80 chr14 62956672 62956878 + 4 NA intron (NM_139318, intron 6 of 10) intron (NM_139318, intron 6 of 10) 88683 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 661-30 chr16 26547490 26547750 + 4 NA Intergenic MIR|SINE|MIR -519307 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 988-29 chr5 56398834 56399375 + 4 NA Intergenic Intergenic 82665 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 604-143 chr6 132580256 132580418 + 4 NA Intergenic Intergenic 9401 NM_003967 9038 Hs.248198 NM_003967 ENSG00000135569 TAAR5 PNR trace amine associated receptor 5 protein-coding 886-19 chr2 101566416 101566765 + 4 NA Intergenic Intergenic -91478 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 611-61 chr18 131556 131822 + 4 NA Intergenic Intergenic -19350 NR_107045 102466878 NR_107045 ENSG00000277521 MIR8078 hsa-mir-8078 microRNA 8078 ncRNA 682-46 chr2 6143811 6144111 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR 161983 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 1040-18 chr7 8568100 8568615 + 4 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 134748 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 1087-15 chr5 63534138 63534525 + 4 NA Intergenic L1MCb|LINE|L1 427961 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 773-45 chr8 33295323 33295669 + 4 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 177650 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 786-55 chr6 8224237 8224488 + 4 NA Intergenic MLT2A1|LTR|ERVL -121767 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 813-9 chr12 75427632 75427948 + 4 NA intron (NR_072995, intron 5 of 6) THE1D|LTR|ERVL-MaLR 36701 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 606-173 chr9 101406257 101406488 + 4 NA intron (NM_197977, intron 3 of 3) intron (NM_197977, intron 3 of 3) 7518 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 1379-4 chr18 9998536 9999182 + 4 NA Intergenic L1M2|LINE|L1 84843 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 488-300 chrX 77119432 77119635 + 4 NA Intergenic MIRb|SINE|MIR -105001 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 802-71 chr8 134259904 134260185 + 4 NA Intergenic MIRc|SINE|MIR -338027 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 535-107 chr17 73653580 73653798 + 4 NA Intergenic Intergenic -9244 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 628-58 chr18 65565195 65565481 + 4 NA Intergenic Intergenic -184914 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 801-57 chr8 63402831 63403122 + 4 NA Intergenic L2a|LINE|L2 -62873 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 646-108 chr5 155976157 155976388 + 4 NA Intergenic L1ME3Cz|LINE|L1 -350485 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 410-180 chr22 48164461 48164599 + 4 NA Intergenic MIRc|SINE|MIR -109834 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 630-137 chr8 83483305 83483586 + 4 NA Intergenic L2c|LINE|L2 79687 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 974-3 chr12 129363492 129363969 + 4 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 155129 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 910-32 chr5 12642598 12643183 + 4 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) -24969 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 603-87 chr2 104100795 104101114 + 4 NA Intergenic L2c|LINE|L2 307378 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 541-220 chr7 92829180 92829354 + 4 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 4692 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 489-226 chr6 62653598 62653789 + 4 NA Intergenic LTR25-int|LTR|ERV1 -367466 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 726-21 chr13 25393856 25394201 + 4 NA intron (NM_016529, intron 1 of 36) intron (NM_016529, intron 1 of 36) 22054 NM_016529 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 565-182 chr8 83260955 83261187 + 4 NA Intergenic Intergenic -142687 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 1182-13 chr5 85147963 85148575 + 4 NA Intergenic Intergenic -763389 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 822-17 chr16 55104276 55104675 + 4 NA Intergenic LTR33|LTR|ERVL 173276 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 880-52 chr9 11451571 11452044 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR 838601 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 418-197 chr4 111821958 111822219 + 4 NA Intergenic L1MC5|LINE|L1 -323366 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 704-66 chr5 38788529 38788875 + 4 NA intron (NR_109951, intron 2 of 3) L1MC4|LINE|L1 57127 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 642-45 chr18 61747524 61747812 + 4 NA promoter-TSS (NR_103449) promoter-TSS (NR_103449) -508 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 532-4 chr1 70615710 70615865 + 4 NA Intergenic Intergenic -90666 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 854-40 chr7 52225473 52225761 + 4 NA Intergenic Intergenic -810016 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 1092-6 chr12 119029616 119030298 + 4 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 48416 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 611-118 chr5 82592728 82592930 + 4 NA Intergenic Intergenic -247326 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 730-7 chr10 41907436 41907692 + 4 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 460481 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 886-10 chr14 67051028 67051373 + 4 NA intron (NM_001024218, intron 9 of 21) L1PA10|LINE|L1 -138240 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 258-263 chr3 88992019 88992127 + 4 NA Intergenic Intergenic -115548 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1558-2 chr5 8801725 8802523 + 4 NA Intergenic L1M3de|LINE|L1 -37608 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 560-123 chr4 22120541 22120760 + 4 NA Intergenic L1MEc|LINE|L1 -171899 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 473-118 chr19 16817940 16818262 + 4 NA TTS (NM_001290355) TTS (NM_001290355) -11297 NM_015260 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 524-153 chr3 77561353 77561537 + 4 NA intron (NM_001290039, intron 10 of 26) intron (NM_001290039, intron 10 of 26) 463433 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 614-62 chr2 188760413 188760660 + 4 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 29587 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 663-37 chr14 54035725 54035903 + 4 NA Intergenic L1MCc|LINE|L1 -78923 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 802-35 chr2 145391159 145391544 + 4 NA Intergenic Intergenic 723384 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 675-27 chr14 43337095 43337382 + 4 NA Intergenic Intergenic 1170045 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 546-21 chr10 33358678 33358888 + 4 NA Intergenic Charlie21a|DNA|hAT-Charlie -23878 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 894-6 chr10 95936465 95936991 + 4 NA intron (NM_001349008, intron 6 of 34) intron (NM_001349008, intron 6 of 34) 28763 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 790-50 chr7 51709461 51709812 + 4 NA Intergenic L1MC5a|LINE|L1 -316380 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 1303 chr15 93264093 93264555 + 4 NA Intergenic (TAGTAAC)n|Simple_repeat|Simple_repeat 58258 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 1009-3 chr11 90278404 90278780 + 4 NA intron (NR_104190, intron 1 of 6) L1MB1|LINE|L1 27360 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 576-60 chr16 77912942 77913126 + 4 NA intron (NM_020927, intron 7 of 8) MLT1A|LTR|ERVL-MaLR -109514 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 709-10 chr10 116132303 116132497 + 4 NA intron (NM_145793, intron 3 of 8) L1ME2z|LINE|L1 62389 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 525-46 chr11 110765703 110765870 + 4 NA Intergenic Intergenic -52597 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 851-25 chr2 204213026 204213452 + 4 NA Intergenic Tigger17a|DNA|TcMar-Tigger 276491 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 758-53 chr3 88800350 88800648 + 4 NA Intergenic L1ME2|LINE|L1 -307122 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1005-14 chr3 98679115 98679485 + 4 NA Intergenic L1ME3A|LINE|L1 -52936 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 618-52 chr19 9297558 9297860 + 4 NA intron (NM_198535, intron 4 of 5) intron (NM_198535, intron 4 of 5) 12129 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 1131-8 chr5 46244306 46244946 + 4 NA Intergenic ALR/Alpha|Satellite|centr -548246 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 680-38 chr14 62735829 62736272 + 4 NA intron (NM_172375, intron 9 of 9) MLT1C|LTR|ERVL-MaLR 309408 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 660-43 chr2 102342998 102343181 + 4 NA exon (NM_016232, exon 7 of 11) exon (NM_016232, exon 7 of 11) 5832 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 858-41 chr7 61925842 61926339 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1377966 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 558-7 chr1 80579565 80579812 + 4 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 43933 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 504-39 chr11 80910672 80911017 + 4 NA Intergenic Intergenic -148041 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 1230-7 chr2 65593119 65593745 + 4 NA Intergenic AluJr|SINE|Alu -160833 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 547-17 chr10 36749140 36749414 + 4 NA Intergenic LTR12C|LTR|ERV1 -376580 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 895-40 chr7 94764653 94765211 + 4 NA Intergenic Intergenic 108562 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 480-283 chr7 125882725 125882951 + 4 NA Intergenic Intergenic -618547 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 523-105 chr17 54619414 54619777 + 4 NA Intergenic L1MDb|LINE|L1 -281096 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 545-254 chr9 82580145 82580416 + 4 NA Intergenic L1MB4|LINE|L1 482862 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 715-33 chr2 44242440 44242644 + 4 NA Intergenic L1M5|LINE|L1 -32938 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 648-64 chr19 9529071 9529380 + 4 NA exon (NM_024106, exon 8 of 8) exon (NM_024106, exon 8 of 8) 9420 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 578-81 chr2 60430863 60431095 + 4 NA Intergenic Intergenic -39604 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 602-57 chr2 67425355 67425588 + 4 NA Intergenic Intergenic 28138 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 673-90 chr4 150016622 150016935 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -61667 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 656-14 chr1 238188688 238188970 + 4 NA Intergenic AluJb|SINE|Alu 297188 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 1289 chr15 24724259 24724805 + 4 NA Intergenic MIR|SINE|MIR 49138 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 730-89 chrX 142162146 142162433 + 4 NA Intergenic L2|LINE|L2 43001 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 472-280 chr6 115355832 115356074 + 4 NA Intergenic Intergenic 287882 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 675-3 chr1 60422364 60422668 + 4 NA Intergenic Intergenic 200169 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 968-6 chr14 68129959 68130306 + 4 NA intron (NM_133509, intron 7 of 10) MLT1E3|LTR|ERVL-MaLR 306540 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 1398-7 chr21 28248759 28249558 + 4 NA Intergenic Intergenic -20491 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 609-29 chr14 26898597 26898879 + 4 NA intron (NR_110041, intron 3 of 3) intron (NR_110041, intron 3 of 3) -9904 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 696-94 chr7 7444557 7444840 + 4 NA intron (NM_001037763, intron 18 of 34) MLT1C|LTR|ERVL-MaLR 91175 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 578-187 chr8 138071244 138071586 + 4 NA intron (NR_161374, intron 1 of 7) L1MD2|LINE|L1 12130 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 929-21 chr2 81142795 81143194 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 323952 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 537-147 chr21 35365284 35365521 + 4 NA Intergenic Intergenic 215362 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 862-19 chr2 153766109 153766445 + 4 NA Intergenic L1M3b|LINE|L1 -105645 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 692-80 chr5 150865393 150865676 + 4 NA intron (NM_001346557, intron 2 of 3) L1MEg|LINE|L1 19011 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 404-39 chr10 58628345 58628464 + 4 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -86611 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 562-68 chr15 93923261 93923584 + 4 NA intron (NR_120320, intron 8 of 8) L1M4|LINE|L1 22721 NR_120323 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 670-83 chr4 20993195 20993418 + 4 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -9297 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 554-146 chr3 106037033 106037289 + 4 NA Intergenic Intergenic -167760 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 654-110 chr6 146176828 146177027 + 4 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 147729 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 665-69 chr4 87689018 87689235 + 4 NA Intergenic Intergenic 38846 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 845-2 chr1 115290942 115291396 + 4 NA intron (NM_002506, intron 2 of 2) intron (NM_002506, intron 2 of 2) 8135 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 766-68 chr8 3433589 3433842 + 4 NA intron (NM_033225, intron 12 of 69) intron (NM_033225, intron 12 of 69) -705264 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 1034-8 chr12 118907853 118908349 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR -73440 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 685-54 chr2 163777332 163777527 + 4 NA Intergenic MIRb|SINE|MIR -41421 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 877-13 chr2 44612524 44612929 + 4 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 250779 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 796-14 chr13 31370550 31370771 + 4 NA Intergenic Intergenic 170685 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 359-439 chr7 12547490 12547619 + 4 NA Intergenic L1M5|LINE|L1 -23166 NR_156701 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 622-106 chr5 42631387 42631583 + 4 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 65621 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 771-30 chr16 50995319 50995617 + 4 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -22290 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 583-46 chr12 115601864 115602174 + 4 NA Intergenic Intergenic 546635 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 1419-3 chr14 80406503 80406895 + 4 NA intron (NR_038355, intron 8 of 8) intron (NR_038355, intron 8 of 8) -175642 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 1024-5 chr1 221222903 221223385 + 4 NA Intergenic L1MEf|LINE|L1 113152 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 469-141 chr2 122094013 122094255 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 338483 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 992-14 chr4 33545670 33546196 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 493960 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 675-99 chr8 126614123 126614414 + 4 NA Intergenic L1MC4a|LINE|L1 -55790 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 854-19 chr17 63204115 63204581 + 4 NA intron (NM_025185, intron 6 of 25) L1MB4|LINE|L1 235919 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 708-82 chr8 141574480 141574736 + 4 NA Intergenic L2c|LINE|L2 -67378 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 933-31 chr5 15913032 15913418 + 4 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -21957 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 990-17 chr3 98268108 98268636 + 4 NA Intergenic L1M1|LINE|L1 4128 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 618-126 chr8 40064359 40064601 + 4 NA Intergenic L1PB4|LINE|L1 -89002 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 867-28 chr21 33220716 33221100 + 4 NA Intergenic L1MCb|LINE|L1 -8987 NM_001289125 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 745-25 chr2 5016405 5016818 + 4 NA Intergenic Intergenic -360389 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 1273 chr1 236380576 236381303 + 4 NA Intergenic L1ME1|LINE|L1 -13347 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 536-125 chr2 114950664 114950935 + 4 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -113774 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 708-67 chr6 39989491 39989765 + 4 NA Intergenic L1PREC2|LINE|L1 -55166 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 646-65 chr2 177472244 177472472 + 4 NA intron (NM_003659, intron 10 of 19) L1MC4|LINE|L1 79585 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 759-24 chr14 86184175 86184436 + 4 NA Intergenic Intergenic 249627 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 957-23 chr4 156982964 156983364 + 4 NA Intergenic Intergenic -11365 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 966-20 chr5 89846137 89846639 + 4 NA Intergenic L2a|LINE|L2 170332 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 664-78 chr3 97977750 97978152 + 4 NA Intergenic Intergenic -5500 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 658-46 chr15 37799891 37800112 + 4 NA Intergenic Intergenic -134606 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 558-115 chr20 23295549 23295824 + 4 NA Intergenic Intergenic -55105 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 588-148 chr7 74364790 74364984 + 4 NA intron (NM_032421, intron 8 of 15) AluJo|SINE|Alu 75412 NM_003388 7461 Hs.647018 NM_003388 ENSG00000106665 CLIP2 CLIP|CLIP-115|CYLN2|WBSCR3|WBSCR4|WSCR3|WSCR4 CAP-Gly domain containing linker protein 2 protein-coding 592-33 chr12 41347970 41348208 + 4 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -89650 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 985-14 chr3 183652324 183652725 + 4 NA intron (NM_001349426, intron 2 of 6) L1MB2|LINE|L1 16901 NM_001349423 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 432-77 chr13 97511609 97511814 + 4 NA Intergenic L1PA16|LINE|L1 77542 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 1035-4 chr12 133158843 133159313 + 4 NA 3' UTR (NM_015394, exon 5 of 5) 3' UTR (NM_015394, exon 5 of 5) -22417 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 672-112 chr8 118644637 118644987 + 4 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -22849 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 1063-2 chr1 112073030 112073632 + 4 NA Intergenic L1ME3A|LINE|L1 82795 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 687-56 chr2 4982676 4983025 + 4 NA Intergenic Intergenic -326628 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 777-57 chr5 106431296 106431677 + 4 NA Intergenic L1MA8|LINE|L1 579528 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 1071-11 chr2 123327375 123327738 + 4 NA Intergenic L1MB1|LINE|L1 -254075 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 1208-7 chr16 31600245 31600816 + 4 NA Intergenic Intergenic -31006 NR_027011 440359 Hs.650902 NR_027011 YBX3P1 CSDAP1 Y-box binding protein 3 pseudogene 1 pseudo 738-22 chr15 81249880 81250074 + 4 NA intron (NM_001352686, intron 2 of 18) L1ME3E|LINE|L1 -46993 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 1894 chr10 93169803 93170578 + 4 NA Intergenic L1MEg|LINE|L1 96297 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 915-28 chr7 82848006 82848286 + 4 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 314738 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 496-312 chrX 82140549 82140742 + 4 NA Intergenic L1M2|LINE|L1 938543 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 638-172 chr9 88880619 88880928 + 4 NA Intergenic MIRb|SINE|MIR -110090 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 710-23 chr12 62524147 62524461 + 4 NA intron (NM_001278469, intron 8 of 35) intron (NM_001278469, intron 8 of 35) 57478 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 645-67 chr20 8895829 8896117 + 4 NA Intergenic L1MEg|LINE|L1 64788 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 698-61 chr3 106532186 106532531 + 4 NA Intergenic Intergenic -662957 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 598-3 chr1 49134986 49135231 + 4 NA intron (NM_001323575, intron 4 of 12) MER11A|LTR|ERVK -122303 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 956-17 chr2 125056975 125057346 + 4 NA Intergenic Intergenic 1031873 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 541-224 chr7 133135100 133135462 + 4 NA Intergenic Intergenic -26770 NR_133931 105375512 Hs.521205 NR_133931 LOC105375512 - uncharacterized LOC105375512 ncRNA 685-31 chr16 31850133 31850458 + 4 NA Intergenic HERVIP10F-int|LTR|ERV1 -23463 NR_049749 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 686-7 chr1 221098602 221098851 + 4 NA Intergenic Intergenic -218586 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 783-42 chr2 112176453 112176794 + 4 NA intron (NM_001128165, intron 4 of 6) intron (NM_001128165, intron 4 of 6) 38238 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 640-7 chr10 15152676 15152871 + 4 NA intron (NM_001308295, intron 1 of 12) MIRc|SINE|MIR 2574 NR_036506 100192204 Hs.714691 NR_036506 ENSG00000206448 PPIAP30 - peptidylprolyl isomerase A pseudogene 30 pseudo 591-109 chr4 54638397 54638610 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -19425 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 729-66 chr6 27403821 27404181 + 4 NA TTS (NR_144687) TTS (NR_144687) 15283 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 1121-5 chr2 13256679 13257303 + 4 NA Intergenic Intergenic -249978 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 659-21 chr12 13319631 13319864 + 4 NA Intergenic Intergenic 56998 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 1289-2 chr4 178904359 178904747 + 4 NA Intergenic L1MEg|LINE|L1 -996617 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 666-17 chr11 55833682 55833945 + 4 NA Intergenic Intergenic -4939 NM_001005496 390144 Hs.554527 NM_001005496 ENSG00000205029 OR5D16 OR11-154 olfactory receptor family 5 subfamily D member 16 protein-coding 570 chr1 4887234 4887504 + 4 NA Intergenic L1PREC2|LINE|L1 232760 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 1008-7 chr18 7375157 7375754 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 85551 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 743-76 chr7 3367545 3367880 + 4 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 66460 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 774-55 chr22 32636535 32636911 + 4 NA intron (NM_003490, intron 6 of 13) MIR3|SINE|MIR 161486 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 1173-3 chr14 56930465 56931133 + 4 NA non-coding (NR_029385, exon 4 of 4) non-coding (NR_029385, exon 4 of 4) 117641 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 752-10 chr11 102596020 102596409 + 4 NA intron (NM_004771, intron 6 of 9) L2c|LINE|L2 29118 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 991-5 chr11 31089722 31090124 + 4 NA intron (NM_001367979, intron 17 of 38) L1ME1|LINE|L1 -97237 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 646-119 chr7 52599040 52599238 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -436494 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 1315-2 chr20 47077789 47078261 + 4 NA intron (NM_172110, intron 7 of 13) intron (NM_172110, intron 7 of 13) -88942 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 548-15 chr1 204651006 204651187 + 4 NA intron (NM_201630, intron 1 of 1) MLT1E2|LTR|ERVL-MaLR 34642 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 560-36 chr12 43614218 43614378 + 4 NA Intergenic L1MA1|LINE|L1 -62095 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 700-86 chr5 169341344 169341663 + 4 NA Intergenic Intergenic -40364 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 794-40 chr7 63048817 63049168 + 4 NA Intergenic L2|LINE|L2 255064 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 990-5 chr12 33366623 33367090 + 4 NA Intergenic L1ME3F|LINE|L1 72963 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 801-66 chr9 28144412 28144789 + 4 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -570734 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 442-134 chr2 84156636 84156806 + 4 NA Intergenic L1MB8|LINE|L1 -133961 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 502-203 chr4 111868063 111868212 + 4 NA Intergenic L2a|LINE|L2 -277317 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 580-94 chr2 185464915 185465139 + 4 NA Intergenic L1MEc|LINE|L1 273692 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 662-57 chr3 5363246 5363554 + 4 NA Intergenic Intergenic -113145 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 352-558 chr9 26912157 26912308 + 4 NA intron (NM_001321546, intron 10 of 12) intron (NM_001321546, intron 10 of 12) -19404 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 468-135 chr2 34329446 34329598 + 4 NA Intergenic Intergenic 262296 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 627-10 chr10 52784250 52784456 + 4 NA Intergenic Intergenic -12653 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 598-12 chr1 229756224 229756416 + 4 NA Intergenic Intergenic 129498 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 670-2 chr1 43841973 43842299 + 4 NA intron (NM_001270466, intron 4 of 4) MSTA-int|LTR|ERVL-MaLR 3514 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 634-6 chr1 157666248 157666460 + 4 NA Intergenic L1MA4|LINE|L1 34415 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 650-54 chr2 56500047 56500301 + 4 NA Intergenic Intergenic -314404 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 945-10 chr18 62689127 62689644 + 4 NA Intergenic Intergenic -26156 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 695-94 chr6 135262034 135262210 + 4 NA Intergenic MLT2D|LTR|ERVL 22962 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 517-224 chr5 150910608 150910832 + 4 NA Intergenic L1MEc|LINE|L1 -5737 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 732-83 chr6 141198594 141198927 + 4 NA Intergenic Intergenic 514946 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 656-129 chr8 115322671 115322958 + 4 NA Intergenic Intergenic 345199 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 977-2 chr14 20094993 20095571 + 4 NA Intergenic Intergenic -22186 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 619-88 chr3 189611513 189611712 + 4 NA intron (NM_001329964, intron 1 of 13) L1PREC2|LINE|L1 14866 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 649-84 chr5 9146005 9146219 + 4 NA intron (NM_003966, intron 12 of 22) intron (NM_003966, intron 12 of 22) -92217 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 634-19 chr10 80366979 80367206 + 4 NA non-coding (NR_070308, exon 6 of 6) non-coding (NR_070308, exon 6 of 6) 10311 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 721-14 chr12 129137162 129137452 + 4 NA intron (NM_133448, intron 5 of 8) (ATCACC)n|Simple_repeat|Simple_repeat 27617 NR_104172 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 1020-8 chr18 70227600 70228024 + 4 NA Intergenic Intergenic -22125 NM_173630 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 862-34 chr8 103976952 103977341 + 4 NA intron (NR_145711, intron 13 of 21) intron (NR_145711, intron 13 of 21) 157926 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 917-16 chr3 99338522 99338909 + 4 NA Intergenic L1MA8|LINE|L1 -299879 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 729-70 chr7 7627057 7627357 + 4 NA Intergenic Intergenic -13545 NM_001302350 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 403-245 chr5 44997012 44997310 + 4 NA Intergenic Intergenic 188214 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 835-34 chr2 240473540 240473913 + 4 NA Intergenic L1M3c|LINE|L1 -17026 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 856-5 chr1 179476185 179476557 + 4 NA intron (NR_073544, intron 16 of 25) L1MB7|LINE|L1 99577 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 765-36 chr20 59820662 59820948 + 4 NA intron (NM_080672, intron 8 of 12) intron (NM_080672, intron 8 of 12) 99595 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 688-5 chr1 88620342 88620675 + 4 NA intron (NR_110682, intron 1 of 3) L1PREC2|LINE|L1 -63636 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 968-5 chr14 45372759 45373183 + 4 NA Intergenic MIR|SINE|MIR -119769 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 644-109 chr8 134801176 134801431 + 4 NA promoter-TSS (NR_029666) promoter-TSS (NR_029666) -696 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 582-41 chr14 83604374 83604567 + 4 NA Intergenic L1PA10|LINE|L1 961838 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 765-44 chr3 193846620 193846926 + 4 NA Intergenic Intergenic -2764 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 712-88 chr6 150664248 150664486 + 4 NA non-coding (NR_138138, exon 4 of 4) non-coding (NR_138138, exon 4 of 4) -19280 NM_001329798 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 538-15 chr1 164069091 164069390 + 4 NA Intergenic L1MA1|LINE|L1 -490120 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 1330-3 chr2 118514161 118514852 + 4 NA Intergenic L1MC3|LINE|L1 88460 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 1048-8 chr14 45797335 45797706 + 4 NA Intergenic MIRb|SINE|MIR -81918 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 720-42 chr19 50633835 50634165 + 4 NA intron (NM_001160328, intron 3 of 10) intron (NM_001160328, intron 3 of 10) 4045 NM_032298 84258 Hs.515554 NM_032298 ENSG00000213023 SYT3 SytIII synaptotagmin 3 protein-coding 575-156 chr5 138685497 138685744 + 4 NA Intergenic Intergenic 67689 NR_134245 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 787-39 chr5 100030406 100030768 + 4 NA Intergenic L1MA3|LINE|L1 357667 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 751-28 chr19 28782000 28782388 + 4 NA Intergenic L1PA15-16|LINE|L1 -54500 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 490-128 chr19 36448412 36448584 + 4 NA 3' UTR (NM_001145343, exon 5 of 5) 3' UTR (NM_001145343, exon 5 of 5) 27324 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 652-49 chr16 56015596 56015830 + 4 NA Intergenic MIR|SINE|MIR -59682 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 657-100 chr8 132905464 132905805 + 4 NA intron (NM_003235, intron 16 of 47) intron (NM_003235, intron 16 of 47) 38676 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 691-34 chr2 4849592 4849825 + 4 NA Intergenic Intergenic -193486 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 523-168 chr22 47957829 47958098 + 4 NA Intergenic L1MD3|LINE|L1 -316401 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 1151-11 chr4 172664036 172664576 + 4 NA intron (NR_125894, intron 1 of 2) MLT1I-int|LTR|ERVL-MaLR 24611 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 889-11 chr12 27477674 27478087 + 4 NA intron (NM_001145010, intron 5 of 8) L1M2|LINE|L1 11070 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 1162-9 chr6 104199270 104199770 + 4 NA Intergenic L1PB3|LINE|L1 660026 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 701-17 chr12 44255448 44255906 + 4 NA intron (NM_001286213, intron 4 of 6) L1ME4a|LINE|L1 419596 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 835-15 chr14 42974852 42975237 + 4 NA Intergenic Intergenic 1368188 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 702-80 chr5 40613412 40613711 + 4 NA Intergenic L2c|LINE|L2 -66354 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 656-50 chr2 31785725 31785979 + 4 NA Intergenic MER21C|LTR|ERVL 18128 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 967-11 chr18 77557458 77557846 + 4 NA Intergenic L1MC4|LINE|L1 307804 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 1247 chr12 15599469 15600041 + 4 NA Intergenic Intergenic 53144 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 406-131 chr2 13673917 13674115 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR -667003 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 793-38 chr4 62985321 62985667 + 4 NA Intergenic L1MC5a|LINE|L1 -823729 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 883-19 chr2 123640145 123640699 + 4 NA Intergenic Intergenic 384752 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1058-6 chr13 22693797 22694240 + 4 NA Intergenic L1ME3A|LINE|L1 204163 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 706-23 chr14 33199767 33200019 + 4 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 261014 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 868-36 chr6 151979766 151980236 + 4 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 170894 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 415-279 chr8 75217515 75217716 + 4 NA Intergenic Intergenic 60866 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 678-65 chr3 19561825 19562156 + 4 NA Intergenic Intergenic -247059 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 438-67 chr12 85808876 85809097 + 4 NA intron (NM_005447, intron 1 of 1) MIR|SINE|MIR 27423 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 351-341 chr4 48580436 48580631 + 4 NA intron (NM_015030, intron 22 of 63) intron (NM_015030, intron 22 of 63) 90281 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 574-154 chr6 84086270 84086529 + 4 NA intron (NM_138409, intron 3 of 3) MER65A|LTR|ERV1 52280 NM_001346544 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 596-23 chr10 31683340 31683574 + 4 NA Intergenic L1M4|LINE|L1 225469 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 700-80 chr5 41309216 41309535 + 4 NA 3' UTR (NM_001005473, exon 3 of 3) 3' UTR (NM_001005473, exon 3 of 3) -47906 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 612-146 chr8 128211775 128211943 + 4 NA Intergenic AluSx3|SINE|Alu 61743 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 436-170 chr21 31033197 31033435 + 4 NA Intergenic Intergenic 5160 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 1597-3 chr8 60066751 60067787 + 4 NA Intergenic L1M5|LINE|L1 214131 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 626-96 chr3 161038454 161038686 + 4 NA intron (NR_134243, intron 4 of 5) AluJr|SINE|Alu 66162 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 401-193 chr21 21443543 21443721 + 4 NA intron (NM_001352592, intron 13 of 18) intron (NM_001352592, intron 13 of 18) 293687 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 976-13 chr2 80416468 80416938 + 4 NA intron (NM_001282599, intron 2 of 11) HAL1M8|LINE|L1 103324 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 650-95 chr5 115937996 115938337 + 4 NA Intergenic Intergenic -18405 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 754-16 chr13 104255847 104256152 + 4 NA Intergenic Intergenic 830799 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 1433-2 chr15 57262652 57263209 + 4 NA intron (NM_207038, intron 16 of 19) intron (NM_207038, intron 16 of 19) 15727 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 640-67 chr2 176861431 176861651 + 4 NA Intergenic MER21C|LTR|ERVL 223787 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 757-8 chr10 70995354 70995679 + 4 NA Intergenic L1ME4a|LINE|L1 56463 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 1163-11 chr3 83478626 83479213 + 4 NA Intergenic Intergenic 1390656 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 729-46 chr21 32081563 32081848 + 4 NA intron (NR_038033, intron 1 of 1) L1MC3|LINE|L1 4590 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 674-86 chr6 15977039 15977303 + 4 NA Intergenic Intergenic -151915 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 661-20 chr13 44207121 44207400 + 4 NA Intergenic Intergenic -11060 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 578-112 chr3 51180394 51180548 + 4 NA intron (NM_004947, intron 12 of 52) MLT1D|LTR|ERVL-MaLR -204820 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 941-29 chr8 25894311 25894898 + 4 NA intron (NM_022659, intron 7 of 15) intron (NM_022659, intron 7 of 15) 150809 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 1178-4 chr15 27068380 27068719 + 4 NA intron (NM_001270873, intron 3 of 5) LTR41|LTR|ERVL 92770 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 834-47 chr8 14973402 14973794 + 4 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -120088 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 740-27 chr15 61266383 61266783 + 4 NA Intergenic Zaphod|DNA|hAT-Tip100 -37281 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 694-9 chr1 232719562 232719871 + 4 NA intron (NR_146922, intron 2 of 2) MIRc|SINE|MIR 1645 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 1470 chr2 79547103 79547857 + 4 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 24297 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 554-70 chr14 56753253 56753447 + 4 NA Intergenic Intergenic 52317 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 316-127 chr12 37851687 37851836 + 4 NA Intergenic ALR/Alpha|Satellite|centr -465013 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 894-31 chr5 3370804 3371312 + 4 NA Intergenic L1MA6|LINE|L1 -81758 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 894-42 chr6 120530348 120530883 + 4 NA Intergenic Intergenic 515436 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 995-9 chr19 56572692 56573206 + 4 NA intron (NM_001001668, intron 3 of 5) L1MD2|LINE|L1 5481 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 957-33 chr9 122164745 122165289 + 4 NA intron (NM_001286828, intron 1 of 3) L2c|LINE|L2 5109 NM_001286828 254956 Hs.71428 NM_198469 ENSG00000185681 MORN5 C9orf113|C9orf18 MORN repeat containing 5 protein-coding 469-184 chr3 102172353 102172523 + 4 NA Intergenic Intergenic 8733 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 459-88 chr14 87392062 87392315 + 4 NA Intergenic Intergenic 263106 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 397-9 chr1 157721808 157722023 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -21146 NR_135216 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 678-106 chr8 118571621 118571948 + 4 NA intron (NM_001101676, intron 2 of 4) THE1B-int|LTR|ERVL-MaLR -49217 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 647-39 chr18 64907256 64907519 + 4 NA Intergenic L1M5|LINE|L1 -647332 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 666-112 chr8 84595141 84595443 + 4 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -110635 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1306 chr19 57701314 57701838 + 4 NA non-coding (NR_110974, exon 3 of 4) non-coding (NR_110974, exon 3 of 4) 7628 NR_110974 7710 Hs.646378 NM_003444 ENSG00000179909 ZNF154 pHZ-92 zinc finger protein 154 protein-coding 1380-2 chr2 67765142 67765860 + 4 NA Intergenic Intergenic 60061 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 511-197 chr4 160130575 160130812 + 4 NA Intergenic L1MA6|LINE|L1 -352909 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 692-82 chr6 23435939 23436146 + 4 NA Intergenic Intergenic -690173 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 737-78 chr6 170101707 170101956 + 4 NA Intergenic Intergenic -58811 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 577-96 chr2 119499059 119499297 + 4 NA intron (NM_002980, intron 1 of 12) L1MDa|LINE|L1 22724 NR_147846 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 608-5 chr1 107928983 107929220 + 4 NA intron (NM_006113, intron 1 of 26) L1M1|LINE|L1 31878 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 651-12 chr1 242868733 242868906 + 4 NA Intergenic MER49|LTR|ERV1 232925 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 638-84 chr3 69915224 69915587 + 4 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) -21187 NM_001184968 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 325-536 chr8 49344018 49344122 + 4 NA Intergenic Intergenic 168110 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 1068-20 chr7 62888644 62889084 + 4 NA Intergenic ALR/Alpha|Satellite|centr 415192 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 694-115 chr6 158906073 158906372 + 4 NA intron (NR_160979, intron 2 of 2) L1ME3C|LINE|L1 17745 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 791-21 chr14 65259273 65259620 + 4 NA Intergenic MIRb|SINE|MIR -37099 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 726-46 chr20 51891914 51892120 + 4 NA Intergenic L1MEc|LINE|L1 -29104 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 344-187 chr17 58782765 58782936 + 4 NA intron (NM_014906, intron 1 of 6) L3|LINE|CR1 26981 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 858-7 chr10 85383568 85383995 + 4 NA Intergenic Intergenic 48991 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 684-117 chr8 84771081 84771376 + 4 NA intron (NM_001287244, intron 1 of 7) L1PB1|LINE|L1 65301 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 775-64 chr5 15431358 15431768 + 4 NA Intergenic Intergenic -68617 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 562-44 chr12 17629268 17629466 + 4 NA Intergenic Intergenic -40289 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 557-2 chr1 35495427 35495670 + 4 NA intron (NM_024874, intron 3 of 20) L1MD|LINE|L1 61855 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 561-139 chr3 176120680 176120911 + 4 NA Intergenic Intergenic -123756 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 436-109 chr17 48402000 48402194 + 4 NA intron (NM_001075099, intron 1 of 12) L1MB8|LINE|L1 28117 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 1190-7 chr5 2978972 2979504 + 4 NA Intergenic Intergenic 61384 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 1045-12 chr2 217542025 217542425 + 4 NA intron (NR_026597, intron 2 of 12) MIRb|SINE|MIR 214368 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 564-85 chr19 37483524 37483701 + 4 NA intron (NM_001321994, intron 3 of 3) intron (NM_001321994, intron 3 of 3) 14041 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 1129-16 chr6 40088614 40089083 + 4 NA Intergenic MER51E|LTR|ERV1 -154386 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 880-9 chr12 22587390 22587712 + 4 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 37495 NR_135031 105369691 Hs.556287 NR_135030 LOC105369691 - uncharacterized LOC105369691 ncRNA 473-280 chr8 117532290 117532546 + 4 NA intron (NM_080651, intron 3 of 3) L1M5|LINE|L1 11705 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 869-31 chr2 84517502 84517880 + 4 NA intron (NM_001370, intron 1 of 76) intron (NM_001370, intron 1 of 76) 1236 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 1075-12 chr5 37789595 37790135 + 4 NA Intergenic AluSx1|SINE|Alu 44957 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 798-8 chr12 4037174 4037537 + 4 NA Intergenic MIRb|SINE|MIR -163907 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 666-68 chr20 14436939 14437247 + 4 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -99426 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 792-57 chr7 26641258 26641699 + 4 NA intron (NR_161202, intron 3 of 3) AluSz|SINE|Alu 3607 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 1159-10 chr20 745918 746409 + 4 NA Intergenic L1M4b|LINE|L1 22337 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 1001-20 chr8 117498344 117498906 + 4 NA Intergenic L2|LINE|L2 -22088 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 621-91 chr5 13729864 13730147 + 4 NA intron (NM_001369, intron 68 of 78) intron (NM_001369, intron 68 of 78) 214475 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 1534-2 chr2 213438883 213439733 + 4 NA intron (NR_047660, intron 8 of 14) MLT1E1A-int|LTR|ERVL-MaLR 154844 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 722-82 chr9 13843501 13843855 + 4 NA Intergenic Charlie5|DNA|hAT-Charlie -84293 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 666-3 chr1 174321847 174322113 + 4 NA intron (NM_001366445, intron 11 of 13) L1ME2z|LINE|L1 46880 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 851 chr1 36828094 36828470 + 4 NA intron (NM_000831, intron 10 of 15) intron (NM_000831, intron 10 of 15) 206233 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 1045-3 chr14 47820155 47820677 + 4 NA Intergenic L1MA3|LINE|L1 -25402 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 1348 chr10 43768273 43768825 + 4 NA Intergenic L1MA9|LINE|L1 10276 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 842-11 chr12 5544636 5545158 + 4 NA Intergenic L1PB2|LINE|L1 50765 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 667-107 chr7 129588406 129588734 + 4 NA Intergenic L1ME3A|LINE|L1 -23150 NM_001293163 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 960-39 chr8 21985752 21986111 + 4 NA intron (NM_015024, intron 13 of 27) intron (NM_015024, intron 13 of 27) -38203 NM_001286680 10361 Hs.131055 NM_182795 ENSG00000158806 NPM2 - nucleophosmin/nucleoplasmin 2 protein-coding 551-104 chr20 42069749 42069973 + 4 NA Intergenic LTR85b|LTR|Gypsy? -451484 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 754-56 chr3 178191954 178192205 + 4 NA Intergenic L1M5|LINE|L1 -227122 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 363-62 chr10 106345855 106345959 + 4 NA Intergenic MIR1_Amn|SINE|MIR 205742 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 684-29 chr12 133088163 133088508 + 4 NA intron (NM_001300777, intron 4 of 4) L1MC1|LINE|L1 8132 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 526-81 chr14 84029028 84029320 + 4 NA Intergenic Intergenic -1242758 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 610-149 chr6 129220093 129220321 + 4 NA intron (NM_000426, intron 12 of 64) Charlie7|DNA|hAT-Charlie 337066 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 863-4 chr11 11317812 11318152 + 4 NA intron (NM_001363464, intron 8 of 9) MIR3|SINE|MIR 35268 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 736-29 chr16 74178180 74178531 + 4 NA Intergenic L1MC5a|LINE|L1 37166 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 1480-3 chr16 82575258 82575906 + 4 NA Intergenic Intergenic -51387 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 1139-5 chr20 42215293 42215876 + 4 NA intron (NM_133170, intron 16 of 31) intron (NM_133170, intron 16 of 31) -469899 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 645-84 chr3 153419187 153419348 + 4 NA intron (NR_146713, intron 5 of 6) L1PA14|LINE|L1 -65228 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 672-20 chr12 61787205 61787493 + 4 NA intron (NM_178539, intron 2 of 4) L1MA6|LINE|L1 405490 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 661-63 chr3 68257824 68258182 + 4 NA intron (NM_001252216, intron 2 of 4) L1MD3|LINE|L1 -242634 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 1510-3 chr8 139539210 139539893 + 4 NA Intergenic Intergenic 163572 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 2152 chr10 4443797 4444618 + 4 NA Intergenic L1MB7|LINE|L1 37738 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 2174 chr5 45998786 45999782 + 4 NA Intergenic ALR/Alpha|Satellite|centr -302904 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1029-7 chr15 23665431 23665863 + 4 NA Intergenic L1MD2|LINE|L1 -17780 NM_019066 54551 Hs.141496 NM_019066 ENSG00000254585 MAGEL2 NDNL1|PWLS|SHFYNG|nM15 MAGE family member L2 protein-coding 693-77 chr4 178585304 178585625 + 4 NA Intergenic Intergenic -677528 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 438-232 chr6 2280910 2281155 + 4 NA intron (NR_046229, intron 3 of 6) intron (NR_046229, intron 3 of 6) 35279 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 856-46 chr7 50881574 50881808 + 4 NA Intergenic Intergenic -88238 NM_001371008 797-42 chr5 150978157 150978433 + 4 NA Intergenic Intergenic -31711 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 374-300 chr5 18430972 18431150 + 4 NA Intergenic Intergenic 623787 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 656-9 chr1 173226610 173226896 + 4 NA Intergenic Tigger18a|DNA|TcMar-Tigger -19422 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 608-93 chr22 32010469 32010715 + 4 NA intron (NR_149128, intron 4 of 4) intron (NR_149128, intron 4 of 4) -32669 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 765-27 chr2 6483705 6484006 + 4 NA Intergenic L2b|LINE|L2 -108433 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 584-145 chr6 53199410 53199642 + 4 NA Intergenic MIR|SINE|MIR -50685 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 1011-3 chr1 112071200 112071812 + 4 NA Intergenic L1MC3|LINE|L1 80970 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 1070-14 chr5 46254645 46255054 + 4 NA Intergenic ALR/Alpha|Satellite|centr -558469 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 750-38 chr2 165541336 165541693 + 4 NA intron (NM_001172173, intron 3 of 6) intron (NM_001172173, intron 3 of 6) -30822 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 822-37 chr20 60940398 60940630 + 4 NA Intergenic (TATAGA)n|Simple_repeat|Simple_repeat -138550 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 1086-12 chr2 39803063 39803583 + 4 NA Intergenic L1MEg|LINE|L1 -24047 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 427-203 chr5 24557569 24557768 + 4 NA intron (NM_001362460, intron 2 of 9) intron (NM_001362460, intron 2 of 9) 87310 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 684-64 chr20 15083564 15083895 + 4 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -113111 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 998-5 chr10 44714263 44714731 + 4 NA Intergenic Intergenic -196819 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 878-12 chr12 18492488 18492778 + 4 NA intron (NM_001288774, intron 20 of 32) intron (NM_001288774, intron 20 of 32) 231093 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 596-165 chr8 81212569 81212807 + 4 NA Intergenic MIRb|SINE|MIR -67848 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 539-174 chr5 174473240 174473460 + 4 NA intron (NR_125806, intron 2 of 5) L1M4|LINE|L1 136996 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 1042-10 chr2 176871900 176872523 + 4 NA Intergenic L1MCb|LINE|L1 234457 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 544-19 chr1 215130211 215130410 + 4 NA intron (NM_001017424, intron 3 of 6) MER21C|LTR|ERVL 47573 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 728-108 chr9 93985111 93985595 + 4 NA Intergenic L1MEg|LINE|L1 29519 NR_144455 101928040 Hs.375820 NR_144455 ENSG00000235601 BARX1-DT BARX1-AS1 BARX1 divergent transcript ncRNA 682-75 chr4 74598141 74598407 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 153138 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 466-192 chr5 4566163 4566318 + 4 NA Intergenic L1M1|LINE|L1 -207241 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 414-38 chr11 11210944 11211098 + 4 NA Intergenic GA-rich|Low_complexity|Low_complexity 142229 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 780-53 chr6 23353154 23353468 + 4 NA Intergenic Intergenic -635387 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 513-67 chr13 65427325 65427539 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR -438615 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 718-13 chr10 111809606 111809915 + 4 NA Intergenic L1ME1|LINE|L1 374005 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 493-289 chr8 13687469 13687727 + 4 NA Intergenic Intergenic 57908 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 652-5 chr1 83020357 83020608 + 4 NA intron (NR_147074, intron 5 of 10) Tigger1|DNA|TcMar-Tigger -34274 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 594-80 chr2 205751038 205751334 + 4 NA intron (NM_018534, intron 11 of 15) intron (NM_018534, intron 11 of 15) 68685 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 836 chr1 89280533 89281084 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -7948 NM_052942 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 492-10 chr1 113548845 113549039 + 4 NA intron (NM_001142782, intron 1 of 20) L2-1_AMi|LINE|L2 158427 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 1061-3 chr12 58272761 58273295 + 4 NA Intergenic Intergenic 185136 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 934-9 chr10 125236567 125237043 + 4 NA Intergenic L1ME3B|LINE|L1 -75775 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 1042 chr1 112274131 112274636 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -121831 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 1237-9 chr7 64392225 64392822 + 4 NA Intergenic ALR/Alpha|Satellite|centr -41170 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 766-64 chr7 64678563 64678922 + 4 NA promoter-TSS (NR_106898) promoter-TSS (NR_106898) -322 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 676-19 chr11 43053341 43053642 + 4 NA Intergenic Intergenic 215878 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 742-43 chr2 175818965 175819185 + 4 NA Intergenic Intergenic 183192 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 786-71 chr9 102214886 102215137 + 4 NA Intergenic L1MEb|LINE|L1 -304626 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 621-69 chr22 24716217 24716530 + 4 NA Intergenic LTR10A|LTR|ERV1 -48128 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 700-57 chr20 61847255 61847594 + 4 NA intron (NM_001252339, intron 4 of 14) intron (NM_001252339, intron 4 of 14) 106238 NR_031658 100302168 NR_031658 ENSG00000284193 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 633-50 chr16 79444126 79444347 + 4 NA Intergenic L1ME4a|LINE|L1 156501 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 749-12 chr1 240543548 240543784 + 4 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 68489 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 583-160 chr8 84270754 84271017 + 4 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 86219 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 569-41 chr11 98305257 98305521 + 4 NA Intergenic MIRc|SINE|MIR -715560 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 1053-19 chr7 11917618 11918124 + 4 NA Intergenic Intergenic -85673 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 1585 chr2 148086016 148086775 + 4 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -64791 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 840-42 chr6 62661885 62662145 + 4 NA Intergenic MIRb|SINE|MIR -375788 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 931-7 chr16 26726626 26727013 + 4 NA Intergenic MIRb|SINE|MIR -340108 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 971-15 chr3 80271125 80271695 + 4 NA Intergenic Intergenic -493487 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 901-3 chr1 218509980 218510496 + 4 NA intron (NR_146760, intron 1 of 2) Tigger18a|DNA|TcMar-Tigger 143 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 1095-3 chr11 54790312 54790795 + 4 NA Intergenic L1PA3|LINE|L1 83721 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 635-38 chr16 82254638 82254849 + 4 NA Intergenic Intergenic -84519 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 847-13 chr12 126828830 126829232 + 4 NA Intergenic Intergenic 45659 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 1053 chr1 164619281 164619676 + 4 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 59756 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 648-131 chr7 3066643 3066860 + 4 NA Intergenic GA-rich|Low_complexity|Low_complexity -22884 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 696-3 chr1 41334496 41334778 + 4 NA Intergenic L1MB8|LINE|L1 -26797 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 602-143 chrX 84361901 84362099 + 4 NA intron (NM_001177478, intron 4 of 9) L1ME4a|LINE|L1 -136172 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 550-219 chr7 93195062 93195320 + 4 NA intron (NM_001346642, intron 8 of 9) MIR1_Amn|SINE|MIR 24380 NM_001288810 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 1044 chr10 29210197 29210684 + 4 NA Intergenic Intergenic -78630 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 934-3 chr1 172624401 172624807 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -34404 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 1453-5 chr5 156965695 156966319 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR -2781 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 693-44 chr17 41735384 41735854 + 4 NA promoter-TSS (NM_177977) promoter-TSS (NM_177977) -973 NM_001079870 9001 Hs.158300 NM_003949 ENSG00000173805 HAP1 HAP2|HIP5|HLP|hHLP1 huntingtin associated protein 1 protein-coding 627-48 chr19 46307672 46307955 + 4 NA intron (NM_152795, intron 3 of 14) AluJb|SINE|Alu 4194 NM_152794 64344 Hs.420830 NM_022462 ENSG00000124440 HIF3A HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17 hypoxia inducible factor 3 subunit alpha protein-coding 616-7 chr1 185751258 185751499 + 4 NA intron (NM_031935, intron 1 of 106) L1MEd|LINE|L1 16987 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 570-9 chr1 97885107 97885322 + 4 NA intron (NM_000110, intron 1 of 22) intron (NM_000110, intron 1 of 22) 35845 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 843-25 chr2 115485144 115485550 + 4 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 141532 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 678-48 chr2 40567718 40567900 + 4 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -55374 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 780-47 chr5 29492112 29492382 + 4 NA Intergenic L1PA12|LINE|L1 -96271 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 562-77 chr17 58277336 58277548 + 4 NA intron (NM_000250, intron 7 of 11) MER3|DNA|hAT-Charlie 3493 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 634-143 chr7 53205613 53205796 + 4 NA Intergenic Intergenic 170071 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 524-260 chr8 86952900 86953081 + 4 NA intron (NM_173538, intron 4 of 10) L1ME1|LINE|L1 86575 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1284-8 chr3 116184194 116184745 + 4 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -175555 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 786-48 chr4 132604018 132604232 + 4 NA intron (NR_126401, intron 1 of 3) intron (NR_126401, intron 1 of 3) 13036 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 589-45 chr17 69416930 69417184 + 4 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 2360 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 680-9 chr1 113461078 113461332 + 4 NA intron (NM_001142782, intron 1 of 20) L1PA14|LINE|L1 70690 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 666-109 chr7 96612939 96613117 + 4 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) 51310 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 579-103 chr3 117354924 117355112 + 4 NA Intergenic Intergenic 335907 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 750-75 chr9 35445288 35445590 + 4 NA intron (NR_003581, intron 8 of 17) intron (NR_003581, intron 8 of 17) 38684 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 627-30 chr14 66438591 66438845 + 4 NA Intergenic L1MEc|LINE|L1 -47653 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 753-36 chr2 108131957 108132245 + 4 NA Intergenic Charlie4z|DNA|hAT-Charlie -79346 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 629-63 chr2 72464179 72464391 + 4 NA intron (NM_001321729, intron 18 of 22) L1MEg1|LINE|L1 -316423 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 630-48 chr2 28156405 28156684 + 4 NA intron (NR_120504, intron 1 of 2) intron (NR_120504, intron 1 of 2) 50417 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 648-77 chr2 202334568 202334861 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -41613 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 576-138 chr5 94606699 94606963 + 4 NA intron (NM_001145678, intron 1 of 20) MSTB|LTR|ERVL-MaLR 11773 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 606-159 chr8 82214850 82215136 + 4 NA Intergenic Intergenic -372707 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 1288 chr1 164033465 164033957 + 4 NA Intergenic L1M4b|LINE|L1 -525649 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 938-12 chr18 10245869 10246266 + 4 NA Intergenic MIR3|SINE|MIR 168303 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 697-16 chr12 12424232 12424721 + 4 NA intron (NM_001300742, intron 2 of 3).2 L1PA6|LINE|L1 67398 NM_001330356 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 480-209 chr4 42599100 42599306 + 4 NA intron (NM_001105529, intron 6 of 35) intron (NM_001105529, intron 6 of 35) 57902 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 668-31 chr14 62083405 62083687 + 4 NA intron (NM_001367661, intron 7 of 8) intron (NM_001367661, intron 7 of 8) -33811 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 1063-6 chr11 114585288 114585810 + 4 NA intron (NM_017678, intron 2 of 5) L1MA3|LINE|L1 10237 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 500-181 chr3 44741118 44741300 + 4 NA Intergenic L1M5|LINE|L1 11574 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 517-37 chr10 108784422 108784666 + 4 NA Intergenic HUERS-P3-int|LTR|ERV1 -715251 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 1363-5 chr8 79607575 79607999 + 4 NA Intergenic Intergenic -3330 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 666-93 chr5 35381548 35381750 + 4 NA Intergenic Intergenic -151162 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 798-7 chr11 80814379 80814763 + 4 NA Intergenic MER2|DNA|TcMar-Tigger -51768 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 612-115 chr5 100899447 100899648 + 4 NA intron (NM_005668, intron 1 of 4) intron (NM_005668, intron 1 of 4) 3735 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 733-19 chr16 76351213 76351588 + 4 NA intron (NM_001322191, intron 2 of 22) intron (NM_001322191, intron 2 of 22) 41548 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 763 chr1 34905318 34905598 + 4 NA intron (NM_001080418, intron 2 of 11) intron (NM_001080418, intron 2 of 11) 24192 NM_001080418 58512 Hs.436393 NM_001080418 ENSG00000116544 DLGAP3 DAP3|SAPAP3 DLG associated protein 3 protein-coding 910-18 chr2 41819171 41819680 + 4 NA Intergenic L1MD1|LINE|L1 -58130 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 740-72 chr7 46031691 46031999 + 4 NA Intergenic Intergenic -110573 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 717-6 chr1 78668657 78668957 + 4 NA Intergenic Intergenic 18976 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 626-115 chr5 56753095 56753400 + 4 NA Intergenic Intergenic 19624 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 676-50 chr19 30770948 30771125 + 4 NA Intergenic L1M3|LINE|L1 -396474 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 760-70 chr7 53887189 53887500 + 4 NA Intergenic Intergenic -75413 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 537-253 chr8 88825911 88826196 + 4 NA Intergenic Intergenic -498570 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 915-9 chr2 67902089 67902595 + 4 NA Intergenic Intergenic -76780 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 631-86 chr3 104740369 104740544 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR -626257 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 568-92 chr19 37129087 37129261 + 4 NA 3' UTR (NM_144689, exon 5 of 5) 3' UTR (NM_144689, exon 5 of 5) 43262 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 645-32 chr14 63261142 63261417 + 4 NA intron (NM_020663, intron 1 of 4) L1M5|LINE|L1 56836 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 1118-13 chr20 42264916 42265381 + 4 NA intron (NM_007050, intron 13 of 30) MIRb|SINE|MIR -420335 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 596-158 chr8 10157613 10157839 + 4 NA intron (NM_001199729, intron 2 of 6) L1MC5|LINE|L1 62075 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 547-77 chr16 78075339 78075551 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -24209 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 604-36 chr12 18433834 18434087 + 4 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 172420 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 897-31 chr5 22720723 22721140 + 4 NA intron (NM_004061, intron 1 of 14) THE1D-int|LTR|ERVL-MaLR 132413 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 413-7 chr1 56658047 56658189 + 4 NA intron (NM_006252, intron 1 of 8) L1MEg|LINE|L1 -12800 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 400-101 chr14 81906519 81906711 + 4 NA Intergenic Intergenic -163477 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 810-28 chr20 45732437 45732760 + 4 NA Intergenic L1M2c|LINE|L1 10251 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 374-170 chr2 5083318 5083482 + 4 NA Intergenic Intergenic -427178 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 1494 chr16 68576731 68577491 + 4 NA Intergenic L1M4|LINE|L1 37820 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 550-14 chr1 212906788 212906952 + 4 NA Intergenic Intergenic -43671 NM_001301056 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 326-88 chr11 3241529 3241675 + 4 NA Intergenic MER4B-int|LTR|ERV1 -9185 NM_001039165 116534 Hs.745512 NM_001039165 ENSG00000184350 MRGPRE GPR167|MGRF|MRGE MAS related GPR family member E protein-coding 526-211 chr6 50253348 50253610 + 4 NA Intergenic Intergenic -203550 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 816-12 chr15 95365387 95365830 + 4 NA Intergenic Intergenic -38508 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 820-56 chr7 14645949 14646339 + 4 NA intron (NM_001350722, intron 13 of 25) L1MA5|LINE|L1 195306 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 645-69 chr20 47153680 47153942 + 4 NA intron (NM_172110, intron 10 of 13) MIRb|SINE|MIR -13156 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 654-32 chr13 65547025 65547333 + 4 NA Intergenic L1M5|LINE|L1 -318868 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 502-256 chr8 46050057 46050241 + 4 NA Intergenic ALR/Alpha|Satellite|centr 567494 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 831-5 chr10 123592629 123592900 + 4 NA Intergenic MSTD|LTR|ERVL-MaLR -73591 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 653-97 chr5 32671908 32672130 + 4 NA Intergenic LTR14A|LTR|ERVK -18853 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 440-252 chr8 119282881 119283040 + 4 NA Intergenic L2c|LINE|L2 -36103 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 519-2 chr1 36630983 36631161 + 4 NA Intergenic Intergenic -147758 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 712-89 chr7 56637809 56638018 + 4 NA Intergenic L1PREC2|LINE|L1 -99783 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 711-40 chr20 48086271 48086520 + 4 NA Intergenic Intergenic -96278 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 714-64 chr6 46095081 46095266 + 4 NA intron (NM_001370650, intron 1 of 6) MSTA-int|LTR|ERVL-MaLR -14825 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 689-41 chr18 63740945 63741161 + 4 NA Intergenic Intergenic -11994 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 706-46 chr3 77206627 77206858 + 4 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 108730 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 1672-2 chr20 38242355 38243326 + 4 NA intron (NM_001029864, intron 2 of 13) (TTTA)n|Simple_repeat|Simple_repeat -17335 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 562-21 chr10 42774271 42774635 + 4 NA Intergenic Intergenic -8342 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 439-153 chr2 192268310 192268462 + 4 NA Intergenic Intergenic -73453 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 557-69 chr17 3994487 3994672 + 4 NA Intergenic L1M4b|LINE|L1 17476 NR_146884 105371496 Hs.579239 NR_146884 LINC01975 - long intergenic non-protein coding RNA 1975 ncRNA 643-111 chr6 151607554 151607784 + 4 NA intron (NM_025059, intron 9 of 10) L1M2|LINE|L1 -82827 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 352-83 chr11 92526469 92526633 + 4 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 174455 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 822-64 chr8 138231016 138231391 + 4 NA intron (NM_015912, intron 7 of 19) AluSz|SINE|Alu -147658 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 956-7 chr11 47873996 47874436 + 4 NA Intergenic L2|LINE|L2 -25672 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 966-11 chr15 87989677 87990000 + 4 NA intron (NM_001007156, intron 14 of 15) AluSx|SINE|Alu -43570 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 667-73 chr4 35604853 35605138 + 4 NA Intergenic Intergenic 638944 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 687-102 chr6 46922668 46922962 + 4 NA promoter-TSS (NM_001098518) promoter-TSS (NM_001098518) -877 NM_001098518 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 1676-2 chr22 27695869 27696539 + 4 NA Intergenic Intergenic 105552 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 904 chr1 46084268 46084604 + 4 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 46237 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 808-63 chrX 123100506 123100978 + 4 NA Intergenic L1MA2|LINE|L1 -83501 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 816-22 chr19 58114336 58114671 + 4 NA intron (NR_027135, intron 1 of 1) (AT)n|Simple_repeat|Simple_repeat 3923 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 397-353 chr9 25980322 25980497 + 4 NA Intergenic Intergenic -86266 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 500-103 chr16 59660022 59660183 + 4 NA Intergenic LTR103b_Mam|LTR|ERV1? 95089 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 525-72 chr14 56541073 56541286 + 4 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 26848 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 651-126 chr8 136628858 136629234 + 4 NA intron (NR_147196, intron 2 of 5) MLT1G3-int|LTR|ERVL-MaLR 98248 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1235-6 chr8 119278304 119278899 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -31744 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 908-36 chr5 8509588 8509880 + 4 NA Intergenic Intergenic 48809 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 1028-8 chr2 143917233 143917645 + 4 NA Intergenic L1MC4a|LINE|L1 -19628 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 913-15 chr17 68289023 68289571 + 4 NA intron (NM_001174166, intron 1 of 6) AluJb|SINE|Alu 1830 NM_004694 9120 Hs.42645 NM_004694 ENSG00000108932 SLC16A6 MCT6|MCT7 solute carrier family 16 member 6 protein-coding 552-199 chr7 53296257 53296521 + 4 NA Intergenic L1M5|LINE|L1 260756 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 701-59 chr3 8791601 8791827 + 4 NA Intergenic L2c|LINE|L2 -22100 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 821-16 chr15 71604355 71604693 + 4 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 57288 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 1003-14 chr4 74252300 74252918 + 4 NA intron (NM_001144978, intron 6 of 7) L1MEi|LINE|L1 -55861 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 1035-9 chr21 22711106 22711507 + 4 NA Intergenic Intergenic -367978 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 1041-4 chr17 3374144 3374644 + 4 NA Intergenic L1PB1|LINE|L1 24016 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 1629-4 chr22 25213477 25214416 + 4 NA Intergenic L2b|LINE|L2 -5693 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 448-249 chr6 168349733 168349907 + 4 NA Intergenic L1MA9|LINE|L1 -30043 NM_214462 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 408-250 chr4 149441729 149441907 + 4 NA intron (NM_001363507, intron 12 of 13) MSTD|LTR|ERVL-MaLR 287523 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 439-22 chr10 18252058 18252290 + 4 NA intron (NM_201593, intron 2 of 13) L4_A_Mam|LINE|RTE-X -8548 NM_000724 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 694-111 chr6 78048329 78048509 + 4 NA Intergenic L1PB4|LINE|L1 395380 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 650-34 chr16 12926699 12926911 + 4 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 25207 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 542-91 chr2 22140398 22140603 + 4 NA Intergenic Intergenic -395979 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 1169-8 chr4 171714306 171714786 + 4 NA Intergenic Intergenic -75783 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 712-70 chr5 19628548 19628823 + 4 NA intron (NM_001349562, intron 5 of 13) L2a|LINE|L2 257587 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 726-51 chr3 54332280 54332500 + 4 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 209838 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 402-173 chr2 166211569 166211718 + 4 NA intron (NM_001365536, intron 24 of 26) L1M4|LINE|L1 -62482 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 928-2 chr12 37983052 37983459 + 4 NA Intergenic ALR/Alpha|Satellite|centr -333519 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 894-13 chr17 56209133 56209643 + 4 NA intron (NM_001365758, intron 2 of 20) L1PB|LINE|L1 55913 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 743-74 chr6 128586342 128586723 + 4 NA Intergenic L1MA1|LINE|L1 -65933 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 517-124 chr2 40061728 40061933 + 4 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 144196 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 669-23 chr14 38301088 38301416 + 4 NA Intergenic L1MCa|LINE|L1 -45159 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 1222-6 chr21 23565876 23566262 + 4 NA Intergenic L1MC3|LINE|L1 -181234 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 562-132 chr22 35003405 35003617 + 4 NA Intergenic Intergenic -5595 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 986-23 chr3 139590623 139590956 + 4 NA intron (NM_001320510, intron 3 of 6) intron (NM_001320510, intron 3 of 6) -51047 NM_001130992 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 2521 chr2 102383345 102384430 + 4 NA intron (NM_003855, intron 6 of 10) intron (NM_003855, intron 6 of 10) 27604 NM_003855 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 890-31 chr6 71698096 71698467 + 4 NA Intergenic L1ME3E|LINE|L1 -188422 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 746-9 chr1 227686532 227686824 + 4 NA Intergenic Intergenic 11029 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 905 chr1 42057857 42058403 + 4 NA Intergenic L1ME3Cz|LINE|L1 -22196 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 723-68 chr7 4290936 4291240 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -156251 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 1241-8 chr4 30563955 30564531 + 4 NA Intergenic L1MA6|LINE|L1 -156126 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 829-3 chr10 8598939 8599320 + 4 NA Intergenic AluJb|SINE|Alu -4738 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 637-38 chr14 49234810 49235141 + 4 NA Intergenic L1PA16|LINE|L1 351405 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 755-24 chr15 60736597 60736879 + 4 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 55169 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 1001-7 chr14 70520618 70521119 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 14136 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 1272-3 chr14 56821208 56821839 + 4 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 8365 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 888-13 chr16 52244122 52244447 + 4 NA Intergenic HERV16-int|LTR|ERVL -14280 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 959-16 chr17 72825139 72825565 + 4 NA intron (NM_001352692, intron 6 of 9) MSTA-int|LTR|ERVL-MaLR -184880 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 922-26 chr5 42914559 42914824 + 4 NA Intergenic Intergenic 78642 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 508-94 chr2 4209472 4209688 + 4 NA Intergenic Intergenic 235419 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 587-147 chr7 3071315 3071589 + 4 NA Intergenic Intergenic -27585 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 1031-3 chr11 103869743 103870258 + 4 NA Intergenic Intergenic 20094 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 815-45 chr8 125712909 125713286 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 238100 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 612-111 chr5 62857368 62857647 + 4 NA Intergenic L1M1|LINE|L1 278688 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 594-131 chr6 134736430 134736716 + 4 NA Intergenic LTR88b|LTR|Gypsy? -196568 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 608-133 chr6 84440907 84441111 + 4 NA intron (NR_132100, intron 4 of 4) intron (NR_132100, intron 4 of 4) 33920 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 622-58 chr2 52000575 52000802 + 4 NA intron (NR_135237, intron 7 of 10) L2a|LINE|L2 -369960 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 556-71 chr15 67977777 67978047 + 4 NA Intergenic LTR54|LTR|ERV1 -76267 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 1205-2 chr13 37845132 37845657 + 4 NA intron (NM_003306, intron 1 of 10) L1M3b|LINE|L1 25031 NM_001135956 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 821-6 chr10 23730300 23730704 + 4 NA intron (NM_001098500, intron 1 of 18) L1MC1|LINE|L1 35775 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 326-354 chr3 126074053 126074150 + 4 NA intron (NM_001008486, intron 1 of 10) L1M4|LINE|L1 10190 NM_001008485 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 1018-6 chr12 33303639 33304365 + 4 NA Intergenic Intergenic 135817 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 978-13 chr20 20526581 20526868 + 4 NA intron (NM_020343, intron 27 of 39) MIRb|SINE|MIR 158620 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 742-45 chr20 5895580 5895865 + 4 NA Intergenic MER63A|DNA|hAT-Blackjack -15788 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 832-10 chr2 5868987 5869401 + 4 NA Intergenic Intergenic -56598 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 468-271 chr5 158971578 158971795 + 4 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 126270 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 768-32 chr21 30897306 30897516 + 4 NA Intergenic Intergenic -15831 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 320-73 chr10 126021570 126021657 + 4 NA intron (NM_003474, intron 21 of 22) intron (NM_003474, intron 21 of 22) -48340 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 583-31 chr11 74499616 74499845 + 4 NA Intergenic L1MD1|LINE|L1 -6006 NM_001144869 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 510-124 chr19 51555638 51555866 + 4 NA Intergenic L1MA9|LINE|L1 -15531 NM_007147 7728 Hs.119014 NM_007147 ENSG00000105497 ZNF175 OTK18 zinc finger protein 175 protein-coding 843-30 chr3 118334303 118334664 + 4 NA Intergenic Intergenic -307285 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 682-77 chr4 91140934 91141135 + 4 NA intron (NM_001145065, intron 10 of 10) L1PA16|LINE|L1 906003 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 950-14 chr2 136575932 136576436 + 4 NA Intergenic MER63A|DNA|hAT-Blackjack -189361 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 2102 chr19 44480975 44482071 + 4 NA intron (NM_001278508, intron 2 of 3) intron (NM_001278508, intron 2 of 3) 18999 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 1298-4 chr6 66912382 66912959 + 4 NA Intergenic Intergenic 1124791 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 976-10 chr18 13306347 13306754 + 4 NA intron (NM_181482, intron 2 of 5) Tigger2|DNA|TcMar-Tigger 28445 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 713-32 chr19 12076643 12076906 + 4 NA exon (NM_001136501, exon 4 of 4) exon (NM_001136501, exon 4 of 4) 12043 NM_001136501 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 1157-6 chr19 24381229 24381865 + 4 NA Intergenic ALR/Alpha|Satellite|centr -218100 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 744-19 chr12 100465032 100465313 + 4 NA Intergenic L1ME4a|LINE|L1 -8694 NR_135146 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 578-41 chr11 102490640 102490958 + 4 NA intron (NR_135076, intron 1 of 2) L1M5|LINE|L1 23544 NR_135076 102723838 Hs.738066 NR_135076 ENSG00000255482 LOC102723838 - uncharacterized LOC102723838 ncRNA 484-84 chr16 46391790 46391992 + 4 NA Intergenic Intergenic 177206 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 468-74 chr14 28427678 28427857 + 4 NA Intergenic Kanga1|DNA|TcMar-Tc2 337552 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 1486-3 chr2 230533043 230533712 + 4 NA intron (NM_001080391, intron 24 of 28) LOR1-int|LTR|ERV1 116621 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 783-34 chr18 71146067 71146388 + 4 NA Intergenic Intergenic 432729 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 1293-4 chr3 70274237 70274947 + 4 NA intron (NM_001364676, intron 2 of 4) L1PA10|LINE|L1 38046 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 574-62 chr18 77179316 77179523 + 4 NA Intergenic Intergenic -46636 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 746-34 chr2 6398001 6398350 + 4 NA Intergenic Intergenic -22753 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 730-84 chr9 32774938 32775261 + 4 NA Intergenic L1M4c|LINE|L1 -8441 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 523-215 chr5 29864413 29864628 + 4 NA Intergenic PRIMA4-int|LTR|ERV1 -16040 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 820-67 chr9 90506863 90507254 + 4 NA intron (NR_034157, intron 3 of 5) MER20B|DNA|hAT-Charlie -73569 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 629-138 chr9 24129572 24129887 + 4 NA Intergenic L1PA15|LINE|L1 -279128 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 548-137 chr21 20654064 20654245 + 4 NA Intergenic Intergenic 148954 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 1282-3 chr16 7687156 7687668 + 4 NA intron (NM_145892, intron 11 of 12) intron (NM_145892, intron 11 of 12) 354567 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 609-121 chr6 166806783 166807161 + 4 NA intron (NM_001318936, intron 2 of 22) L1M4c|LINE|L1 55553 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 449-206 chr5 25663349 25663637 + 4 NA Intergenic Intergenic 472540 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 771-14 chr11 41867413 41867707 + 4 NA Intergenic Intergenic 152992 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 633-27 chr11 104423420 104423667 + 4 NA Intergenic Intergenic 185759 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 592-123 chr3 188976415 188976606 + 4 NA Intergenic Intergenic -28871 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 841-46 chrX 45580845 45581214 + 4 NA Intergenic L1M1|LINE|L1 75641 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 384-116 chr14 82282046 82282186 + 4 NA Intergenic Intergenic -360516 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 900-8 chr11 16472512 16472950 + 4 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) 3657 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 623-63 chr2 106717100 106717349 + 4 NA Intergenic L1MC2|LINE|L1 168804 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 638-128 chr5 159752074 159752248 + 4 NA Intergenic MIRb|SINE|MIR 119223 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 670-6 chr1 182453586 182453814 + 4 NA intron (NM_001366934, intron 1 of 22) L3|LINE|CR1 3554 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 620-24 chr11 109559781 109560008 + 4 NA Intergenic L1PB2|LINE|L1 137704 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 784-35 chr22 32146363 32146710 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 12767 NM_001010859 150297 Hs.426551 NM_001010859 ENSG00000205856 C22orf42 dJ90G24.6 chromosome 22 open reading frame 42 protein-coding 706-41 chr2 54055687 54056017 + 4 NA intron (NM_001320586, intron 3 of 6) intron (NM_001320586, intron 3 of 6) -59763 NM_001320589 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 494-122 chr2 39700142 39700302 + 4 NA intron (NM_152390, intron 1 of 3) L1M4|LINE|L1 34305 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 378-224 chr2 51661020 51661181 + 4 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 628499 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 606-145 chr7 4890319 4890525 + 4 NA Intergenic MER4A|LTR|ERV1 -6706 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 430-303 chr8 36930482 36930681 + 4 NA intron (NR_134267, intron 25 of 27) intron (NR_134267, intron 25 of 27) 146207 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 2201 chr8 130843721 130844650 + 4 NA intron (NM_001115, intron 11 of 17) intron (NM_001115, intron 11 of 17) 196724 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 1500-3 chr14 48535317 48535901 + 4 NA Intergenic L1MC1|LINE|L1 -740595 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 625-96 chr6 78448052 78448210 + 4 NA Intergenic Intergenic 91178 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 668-2 chr1 60799135 60799348 + 4 NA intron (NR_110628, intron 1 of 5) MIRb|SINE|MIR 26343 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 556-167 chr4 179933310 179933509 + 4 NA Intergenic Intergenic 1225740 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 672-105 chr7 79566498 79566752 + 4 NA Intergenic (TATATAAC)n|Simple_repeat|Simple_repeat 112665 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 843-10 chr11 45601422 45601816 + 4 NA Intergenic L1MEc|LINE|L1 64003 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 689-93 chr7 33142297 33142574 + 4 NA intron (NM_001348044, intron 1 of 18) intron (NM_001348044, intron 1 of 18) 12871 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 693-46 chr18 11384013 11384374 + 4 NA Intergenic Intergenic -70285 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 652-104 chr6 102601725 102601930 + 4 NA Intergenic L1PA11|LINE|L1 1202842 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 516-9 chr1 161341572 161341751 + 4 NA intron (NM_001278172, intron 3 of 3) intron (NM_001278172, intron 3 of 3) 26222 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 680-107 chr7 4442799 4443091 + 4 NA Intergenic L1M5|LINE|L1 -239350 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 702-18 chr12 90082509 90082821 + 4 NA Intergenic Intergenic 134972 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 693-58 chr2 82222241 82222546 + 4 NA Intergenic L1MEf|LINE|L1 -634410 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 669-58 chr2 181730695 181730970 + 4 NA Intergenic Intergenic -50167 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 804-10 chr11 81185969 81186451 + 4 NA Intergenic MER20|DNA|hAT-Charlie -423407 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 418-36 chr10 115216843 115217033 + 4 NA intron (NM_207303, intron 9 of 28) intron (NM_207303, intron 9 of 28) 123573 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 791-5 chr1 164573948 164574211 + 4 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 14357 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 794-15 chr12 98180293 98180598 + 4 NA Intergenic Intergenic -184997 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 702-59 chr21 27274194 27274519 + 4 NA Intergenic Intergenic -307268 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 1543-3 chr8 123610232 123610701 + 4 NA Intergenic Intergenic 43335 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 1084-11 chr2 192651439 192651931 + 4 NA Intergenic AluSq|SINE|Alu -98160 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 200-214 chr5 45601489 45601546 + 4 NA intron (NM_021072, intron 2 of 7) Tigger15a|DNA|TcMar-Tigger 94863 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 442-104 chr17 69420352 69420502 + 4 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 5730 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 743-2 chr1 34412329 34412566 + 4 NA Intergenic Intergenic 235540 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 1365-5 chr5 94328036 94328711 + 4 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -216674 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 750-36 chr2 112991799 112992069 + 4 NA Intergenic L1MA8|LINE|L1 -13525 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 2272-2 chr20 59795777 59796822 + 4 NA intron (NM_080672, intron 7 of 12) L1M2|LINE|L1 75089 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 696-11 chr10 15417555 15417833 + 4 NA Intergenic L1MEg|LINE|L1 -46405 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 582-100 chr3 109292421 109292634 + 4 NA Intergenic Intergenic 23990 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 352-185 chr17 65793556 65793728 + 4 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 32809 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 849-4 chr11 4470508 4470991 + 4 NA Intergenic L2|LINE|L2 -18130 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 949-16 chr5 51664133 51664589 + 4 NA Intergenic Intergenic 280913 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 624-79 chr22 27509519 27509869 + 4 NA Intergenic Intergenic 199043 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 939-16 chr21 26999169 26999627 + 4 NA Intergenic Intergenic -32310 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 706-5 chr10 57438094 57438308 + 4 NA Intergenic L1MB3|LINE|L1 -133642 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 548-176 chr5 8553433 8553659 + 4 NA Intergenic MIRc|SINE|MIR 92621 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 660-75 chr4 147277194 147277572 + 4 NA Intergenic Intergenic 67334 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 657-41 chr17 72628881 72629202 + 4 NA intron (NR_033876, intron 2 of 4) HAL1|LINE|L1 11431 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 852-5 chr1 181165042 181165451 + 4 NA Intergenic L2a|LINE|L2 -9238 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 606-109 chr4 18335367 18335546 + 4 NA Intergenic L1MA4A|LINE|L1 -313581 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 750-80 chrX 75034039 75034344 + 4 NA Intergenic Intergenic -108739 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 656-2 chr1 17755584 17755879 + 4 NA intron (NM_030812, intron 1 of 2) intron (NM_030812, intron 1 of 2) 398 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 692-5 chr1 180702406 180702663 + 4 NA intron (NR_137330, intron 2 of 12) L1HS|LINE|L1 70512 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 688-40 chr14 47354140 47354371 + 4 NA intron (NM_001113498, intron 1 of 16) L1M3|LINE|L1 -11009 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 1271-6 chr19 36831649 36832355 + 4 NA intron (NM_001242800, intron 1 of 4) L1M7|LINE|L1 6025 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 556-27 chr10 99531911 99532114 + 4 NA promoter-TSS (NR_120618) promoter-TSS (NR_120618) -835 NR_120618 101927324 Hs.642588 NR_120618 ENSG00000257582 LINC01475 - long intergenic non-protein coding RNA 1475 ncRNA 685-7 chr10 30804670 30805086 + 4 NA Intergenic Intergenic 81659 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 621-118 chr7 81133096 81133271 + 4 NA Intergenic Intergenic -210794 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 1118-21 chr8 141499139 141499757 + 4 NA intron (NR_160399, intron 1 of 29) L1MEc|LINE|L1 7781 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 519-234 chr8 82052177 82052396 + 4 NA Intergenic Intergenic -210000 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 439-57 chr11 80229402 80229541 + 4 NA Intergenic L1MA6|LINE|L1 533332 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 582-149 chr8 49086452 49086631 + 4 NA Intergenic MLT1E|LTR|ERVL-MaLR 14197 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 506-301 chr9 11268344 11268646 + 4 NA Intergenic LTR25-int|LTR|ERV1 655289 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 724-15 chr13 53455928 53456211 + 4 NA Intergenic L2c|LINE|L2 -304169 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 584-51 chr17 52135839 52136014 + 4 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 22788 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 865-45 chr8 119318354 119318683 + 4 NA Intergenic LTR85c|LTR|Gypsy? -6653 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 867-22 chr2 67745496 67745888 + 4 NA Intergenic Intergenic 79870 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 638-32 chr12 133162956 133163177 + 4 NA Intergenic AluJb|SINE|Alu -18429 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 771-88 chr8 140077019 140077418 + 4 NA intron (NM_001160372, intron 17 of 22) L2a|LINE|L2 23317 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1736-2 chr3 123847553 123848402 + 4 NA intron (NM_001321309, intron 2 of 32) L1ME3Cz|LINE|L1 36355 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 680-88 chr4 62147650 62147972 + 4 NA intron (NR_110595, intron 2 of 7) intron (NR_110595, intron 2 of 7) 13954 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 632-55 chr2 89778792 89779028 + 4 NA Intergenic Intergenic -141003 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 571-176 chr8 126633767 126633938 + 4 NA Intergenic Intergenic -75374 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 798-63 chr8 59078644 59078866 + 4 NA intron (NM_014729, intron 1 of 8) MSTA-int|LTR|ERVL-MaLR 40392 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 787-41 chr6 64973047 64973391 + 4 NA intron (NM_001292009, intron 14 of 43) intron (NM_001292009, intron 14 of 43) -328199 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 468-85 chr14 88027664 88027879 + 4 NA intron (NR_046094, intron 2 of 3) LTR16E2|LTR|ERVL -1459 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 989-8 chr18 2391941 2392499 + 4 NA Intergenic Intergenic 179285 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 804-4 chr1 187785270 187785769 + 4 NA Intergenic Intergenic 341891 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 1100-12 chr3 94993458 94993944 + 4 NA Intergenic Intergenic 55438 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 679-59 chr2 238551149 238551386 + 4 NA intron (NR_037809, intron 2 of 2) intron (NR_037809, intron 2 of 2) 4232 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 793-6 chr10 74333792 74334158 + 4 NA intron (NM_001369124, intron 4 of 9) intron (NM_001369124, intron 4 of 9) 157212 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 620-86 chr3 39548271 39548442 + 4 NA Intergenic Intergenic 46290 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 687-70 chr22 28185914 28186118 + 4 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -265404 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 1040-2 chr10 91451384 91451904 + 4 NA intron (NM_182765, intron 2 of 20) MER5A|DNA|hAT-Charlie 41359 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 924-12 chr11 38638544 38638917 + 4 NA intron (NR_120554, intron 1 of 4) L1MA3|LINE|L1 7626 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 420-241 chr5 118544381 118544557 + 4 NA intron (NR_104610, intron 1 of 9) intron (NR_104610, intron 1 of 9) 17648 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 690-36 chr14 52981565 52981917 + 4 NA Intergenic L1MC1|LINE|L1 -30644 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 990-13 chr2 213533480 213533792 + 4 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -224431 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 521-141 chr20 14029144 14029538 + 4 NA intron (NM_001351663, intron 2 of 17) intron (NM_001351663, intron 2 of 17) 33825 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 708-14 chr11 79512073 79512256 + 4 NA Intergenic Intergenic -71134 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 725-56 chr7 125290868 125291291 + 4 NA intron (NR_110188, intron 3 of 8) intron (NR_110188, intron 3 of 8) -26788 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 522-202 chr5 24118990 24119184 + 4 NA intron (NR_131245, intron 4 of 4) L1ME1|LINE|L1 167739 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 721-9 chr10 44018828 44019054 + 4 NA Intergenic L1ME2z|LINE|L1 106539 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 406-62 chr12 70136473 70136635 + 4 NA Intergenic L1P4|LINE|L1 -106476 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 1251 chr1 41339008 41339626 + 4 NA Intergenic L1MEc|LINE|L1 -22117 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 1342-2 chr19 12217207 12217604 + 4 NA Intergenic L1M1|LINE|L1 22390 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 452-203 chr5 4004127 4004250 + 4 NA Intergenic Intergenic 408356 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 426-43 chr11 48219511 48219685 + 4 NA Intergenic Intergenic 2788 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 1022-27 chr8 131009684 131010072 + 4 NA intron (NM_001115, intron 1 of 17) L2c|LINE|L2 31031 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 484-27 chr10 36610187 36610459 + 4 NA Intergenic Intergenic -515534 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 1256-10 chr6 164560324 164560795 + 4 NA Intergenic L1ME1|LINE|L1 261504 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 647-96 chr7 112649606 112649908 + 4 NA intron (NR_110158, intron 5 of 7) L1MA9|LINE|L1 27376 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 720-2 chr1 110885891 110886192 + 4 NA intron (NM_001040033, intron 2 of 8) L1ME1|LINE|L1 12893 NM_000560 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 492-106 chr17 15780849 15781063 + 4 NA Intergenic Intergenic -5894 NR_002211 4213 Hs.356135 NR_002211 MEIS3P1 MEIS3|MEIS4|MRG2 Meis homeobox 3 pseudogene 1 pseudo 773-44 chr7 97721407 97721690 + 4 NA Intergenic L1MB3|LINE|L1 -10538 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 578-157 chr7 47319845 47320175 + 4 NA intron (NM_022748, intron 20 of 30) intron (NM_022748, intron 20 of 30) 144793 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 694-52 chr18 6338961 6339231 + 4 NA intron (NM_001365765, intron 1 of 18) L1MEg|LINE|L1 19934 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 214-308 chr7 119205622 119205681 + 4 NA Intergenic Intergenic 701724 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 897-21 chr2 103090810 103091299 + 4 NA Intergenic L1PREC2|LINE|L1 -106625 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 969-14 chr2 46864998 46865347 + 4 NA Intergenic MIRb|SINE|MIR 37308 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 485-40 chr10 129491724 129492038 + 4 NA intron (NM_002412, intron 1 of 4) L1ME3Cz|LINE|L1 24640 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 748-69 chr5 38165896 38166244 + 4 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 17590 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 550-18 chr1 245878004 245878203 + 4 NA intron (NM_022743, intron 8 of 11) intron (NM_022743, intron 8 of 11) 539309 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 625-29 chr12 127755885 127756115 + 4 NA Intergenic Intergenic -100412 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 1208-3 chr12 46735726 46736379 + 4 NA Intergenic L1PA15-16|LINE|L1 89945 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 899-6 chr12 115300992 115301429 + 4 NA Intergenic Intergenic -617035 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 1400-3 chr18 77300157 77300568 + 4 NA Intergenic Intergenic 50514 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 1530-2 chr14 68531169 68531739 + 4 NA intron (NM_001321818, intron 10 of 10) L1MEi|LINE|L1 97333 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 686-67 chr5 112055519 112055791 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR -78723 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 1004-16 chr5 159750783 159751406 + 4 NA Intergenic Intergenic 120290 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 551-106 chr20 47076213 47076431 + 4 NA intron (NM_172110, intron 7 of 13) L1PA15|LINE|L1 -90645 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 892-4 chr10 7449364 7449827 + 4 NA Intergenic Tigger7|DNA|TcMar-Tigger -38109 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 722-67 chr6 84672848 84673143 + 4 NA Intergenic Intergenic -16463 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 503-275 chr8 26987338 26987587 + 4 NA Intergenic Intergenic 61501 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 369-47 chr10 82306147 82306279 + 4 NA intron (NM_001370082, intron 3 of 10) L1M5|LINE|L1 -73293 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 584-168 chr8 40576580 40576862 + 4 NA intron (NM_024645, intron 6 of 6) L1M2|LINE|L1 -233358 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 589-102 chr4 33894084 33894318 + 4 NA Intergenic L1MEc|LINE|L1 145692 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 883-7 chr14 51871312 51871659 + 4 NA intron (NM_001243774, intron 1 of 2) MIRb|SINE|MIR 10873 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 746-13 chr10 70030392 70030705 + 4 NA Intergenic L1MEc|LINE|L1 -22298 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 889-19 chr2 15110523 15111014 + 4 NA Intergenic HAL1|LINE|L1 450566 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 680-6 chr1 74124718 74124978 + 4 NA intron (NM_001105659, intron 4 of 7) L1MA3|LINE|L1 73328 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 617-134 chr8 90138221 90138438 + 4 NA Intergenic L1MEc|LINE|L1 -55450 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 638-16 chr10 53091393 53091676 + 4 NA Intergenic Intergenic -319834 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 628-81 chr20 40519205 40519455 + 4 NA Intergenic Intergenic 169906 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 493-103 chr16 86023445 86023676 + 4 NA Intergenic L1MC4|LINE|L1 105213 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 663-45 chr17_GL000205v2_random 6824 7103 + 4 NA Intergenic CER|Satellite|Satellite 51003 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 510-185 chr3 80957344 80957493 + 4 NA Intergenic ALR/Alpha|Satellite|centr -36450 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 869-26 chr19 40037510 40037970 + 4 NA intron (NM_001005851, intron 4 of 4) intron (NM_001005851, intron 4 of 4) 18491 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 707-79 chr5 18970652 18970893 + 4 NA Intergenic L1MA8|LINE|L1 915500 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 587-136 chr5 108318659 108318927 + 4 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 63305 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 677-65 chr5 18252454 18252734 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR 445320 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 1050-11 chr4 61560947 61561323 + 4 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 358963 NM_001371342 670-132 chr8 140037049 140037452 + 4 NA intron (NM_001160372, intron 17 of 22) MIR|SINE|MIR 63285 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 613-80 chr3 68700923 68701219 + 4 NA Intergenic Intergenic 200434 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 530-167 chr3 98537250 98537419 + 4 NA Intergenic Intergenic 5356 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 673-103 chr5 127283594 127283830 + 4 NA Intergenic MER5A1|DNA|hAT-Charlie -7052 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 589-139 chr6 22536746 22536972 + 4 NA Intergenic Intergenic -32707 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 385-186 chr2 150239397 150239540 + 4 NA intron (NR_146972, intron 2 of 2) ERV3-16A3_I-int|LTR|ERVL 17539 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 481-192 chr3 30942542 30942684 + 4 NA Intergenic Intergenic -47952 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 1847-2 chr5 110180670 110181547 + 4 NA Intergenic Intergenic 297926 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 730-41 chr20 48060373 48060721 + 4 NA Intergenic Charlie2a|DNA|hAT-Charlie -70430 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 870-16 chr2 114071948 114072283 + 4 NA Intergenic Intergenic -92131 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 849-21 chr2 67025281 67025626 + 4 NA Intergenic L1ME3G|LINE|L1 -60993 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 750-58 chr5 9840666 9841016 + 4 NA intron (NR_027112, intron 4 of 12) AluYj4|SINE|Alu -13536 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 377-180 chr19 21243852 21244019 + 4 NA Intergenic L1M3a|LINE|L1 85475 NM_021269 7562 Hs.466296 NM_021269 ENSG00000182141 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 852-38 chr4 63784889 63785314 + 4 NA Intergenic Intergenic 624349 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1321-5 chr19 29335673 29336330 + 4 NA intron (NR_040029, intron 9 of 9) L1MA7|LINE|L1 -122850 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1321-6 chr19 53177691 53178075 + 4 NA intron (NM_024733, intron 2 of 3) MIR|SINE|MIR 15475 NM_001353458 79788 Hs.745230 NM_024733 ENSG00000197497 ZNF665 ZFP160L zinc finger protein 665 protein-coding 654-97 chr5 106541674 106541977 + 4 NA Intergenic Intergenic 469189 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 1145-8 chr4 145511983 145512528 + 4 NA intron (NM_001354817, intron 1 of 6) L1MEg|LINE|L1 4939 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 658-69 chr2 174965406 174965705 + 4 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 39698 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 643-48 chr19 29554160 29554411 + 4 NA intron (NM_001146339, intron 4 of 4) L1PA10|LINE|L1 27701 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 766-6 chr10 79577120 79577515 + 4 NA Intergenic L1MC1|LINE|L1 -16910 NM_001098668 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 952-6 chr11 114567423 114567798 + 4 NA Intergenic LTR41B|LTR|ERVL -7729 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 1381-5 chr6 69342476 69343034 + 4 NA intron (NM_001704, intron 26 of 31) intron (NM_001704, intron 26 of 31) 453711 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 648-69 chr2 81236853 81237073 + 4 NA Intergenic Intergenic 229983 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 733-38 chr2 106903098 106903592 + 4 NA Intergenic L1MDa|LINE|L1 -16236 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 274-99 chr12 98014957 98015084 + 4 NA Intergenic L1MA9|LINE|L1 -19572 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 760-59 chr5 64390826 64391089 + 4 NA Intergenic L1MD2|LINE|L1 -115058 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 538-16 chr1 167323363 167323538 + 4 NA intron (NR_037163, intron 2 of 16) intron (NR_037163, intron 2 of 16) -5620 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 1146-12 chr4 108552454 108553077 + 4 NA intron (NR_026968, intron 2 of 3) L1MA4A|LINE|L1 -4468 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 975-11 chr2 22419324 22419739 + 4 NA Intergenic L1MEd|LINE|L1 -116948 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 676-4 chr1 79134218 79134435 + 4 NA Intergenic Intergenic -127596 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 522-231 chr7 17868085 17868325 + 4 NA intron (NM_001350862, intron 9 of 25) intron (NM_001350862, intron 9 of 25) 72289 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 434-4 chr1 33951608 33951747 + 4 NA intron (NM_052896, intron 3 of 69) intron (NM_052896, intron 3 of 69) 82721 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 440-195 chr5 34686954 34687099 + 4 NA promoter-TSS (NM_001145523) promoter-TSS (NM_001145523) -533 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 1007-21 chr9 94891274 94891774 + 4 NA intron (NM_032823, intron 5 of 14) L1MD2|LINE|L1 54030 NR_147614 101928119 Hs.630906 NR_147613 LOC101928119 - uncharacterized LOC101928119 ncRNA 828-4 chr1 101154228 101154464 + 4 NA Intergenic Intergenic 82182 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 936-6 chr12 131981498 131981868 + 4 NA intron (NM_015409, intron 4 of 52) intron (NM_015409, intron 4 of 52) 31741 NM_015409 57634 Hs.723478 NM_015409 ENSG00000183495 EP400 CAGH32|P400|TNRC12 E1A binding protein p400 protein-coding 759-51 chr4 58272021 58272367 + 4 NA Intergenic MIR|SINE|MIR 264134 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 339-429 chr4 156340412 156340561 + 4 NA Intergenic L1MEd|LINE|L1 -386620 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 682-54 chr2 156231298 156231496 + 4 NA intron (NR_110250, intron 1 of 3) L1PB1|LINE|L1 23534 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 503-303 chr9 73600459 73600701 + 4 NA Intergenic L1ME3A|LINE|L1 448715 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 544-232 chr8 131556730 131556954 + 4 NA Intergenic L1MA3|LINE|L1 -347251 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 1246-11 chr7 13419269 13419738 + 4 NA Intergenic Intergenic 567011 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 432-75 chr13 54472961 54473095 + 4 NA Intergenic Intergenic -160980 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 583-67 chr16 84021380 84021671 + 4 NA intron (NM_001080442, intron 6 of 9) MSTC-int|LTR|ERVL-MaLR 20632 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 448-133 chr2 190022665 190022887 + 4 NA Intergenic Intergenic 39953 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 804-64 chr7 45309500 45309882 + 4 NA Intergenic L1M2|LINE|L1 151900 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 654-120 chr8 79253726 79254002 + 4 NA Intergenic Intergenic -78324 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 353-113 chr12 60867198 60867383 + 4 NA Intergenic Intergenic 1177920 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 506-247 chr6 22975762 22976078 + 4 NA Intergenic L1MC|LINE|L1 -257996 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 667-25 chr12 116580722 116580929 + 4 NA Intergenic Intergenic 21444 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 534-181 chr4 97298508 97298764 + 4 NA Intergenic Intergenic -68290 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 737-66 chr5 52847520 52847860 + 4 NA intron (NM_181501, intron 1 of 28) AluSx|SINE|Alu 59774 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 749-42 chr18 11431151 11431512 + 4 NA Intergenic L1MA4A|LINE|L1 -23147 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 379-53 chr11 23784117 23784315 + 4 NA Intergenic Intergenic -365026 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 577-103 chr2 213865502 213865849 + 4 NA intron (NR_047660, intron 10 of 14) (AT)n|Simple_repeat|Simple_repeat 107608 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 583-121 chr4 53694706 53694963 + 4 NA Intergenic Intergenic -1067 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 887-30 chr8 104333973 104334548 + 4 NA Intergenic (CAAAA)n|Simple_repeat|Simple_repeat -5536 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 1485-3 chr5 10051077 10051937 + 4 NA Intergenic Intergenic -147683 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 986-2 chr1 87705088 87705533 + 4 NA Intergenic L1ME3Cz|LINE|L1 -333655 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 617-140 chr8 139321599 139321900 + 4 NA Intergenic Intergenic 381374 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 690-89 chr6 27941148 27941436 + 4 NA Intergenic L2a|LINE|L2 -15949 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 1474-2 chr2 79250071 79250915 + 4 NA Intergenic Intergenic -90740 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 579-108 chr4 35745174 35745397 + 4 NA Intergenic L1PA13|LINE|L1 498654 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 836-61 chr8 115896456 115896725 + 4 NA Intergenic Intergenic -227615 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 1432-3 chr20 39679354 39679908 + 4 NA Intergenic Intergenic -324830 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 869-34 chr2 196648693 196649177 + 4 NA intron (NM_001353339, intron 2 of 22) L1MA7|LINE|L1 9220 NM_001353339 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 715-30 chr19 52448790 52449006 + 4 NA intron (NM_001291368, intron 4 of 4) L1MA4|LINE|L1 -4655 NM_001366182 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 947-30 chr8 117433107 117433514 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -87403 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 1044-15 chr3 171242831 171243264 + 4 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) -136288 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 654-122 chr8 91858307 91858565 + 4 NA Intergenic Intergenic 159244 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 825-36 chr4 32976996 32977361 + 4 NA Intergenic Intergenic 626140 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 643-44 chr17 69463131 69463515 + 4 NA intron (NM_002758, intron 1 of 11) (AT)n|Simple_repeat|Simple_repeat 22209 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 572-63 chr15 98687325 98687495 + 4 NA intron (NM_000875, intron 1 of 20) intron (NM_000875, intron 1 of 20) -36189 NR_126453 104472848 Hs.349049 NR_126453 IRAIN IGF1R-AS IGF1R antisense imprinted non-protein coding RNA ncRNA 1264 chr11 20799179 20799713 + 4 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 129860 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 652-99 chr5 163588871 163589169 + 4 NA Intergenic L2b|LINE|L2 83401 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 626-152 chr9 98461423 98461699 + 4 NA intron (NM_005458, intron 6 of 18) L1MEg|LINE|L1 -205912 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 634-64 chr18 11387453 11387736 + 4 NA Intergenic Intergenic -66884 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 887-8 chr15 86614855 86615269 + 4 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -298094 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 885-28 chr8 86297471 86297737 + 4 NA Intergenic L1MD2|LINE|L1 -44943 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 598-152 chr9 87753892 87754153 + 4 NA Intergenic ERVL-int|LTR|ERVL -18893 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 512-26 chr10 13573715 13573938 + 4 NA Intergenic L1MEf|LINE|L1 -13139 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 1362-5 chr3 31334400 31334807 + 4 NA Intergenic L1MA2|LINE|L1 -172816 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 631-36 chr14 47533432 47533700 + 4 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 141388 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 947-4 chr12 45111698 45112093 + 4 NA Intergenic Intergenic -46484 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 647-3 chr1 59035307 59035535 + 4 NA intron (NR_110626, intron 2 of 2) intron (NR_110626, intron 2 of 2) 14945 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 609-63 chr2 228007817 228008060 + 4 NA intron (NM_030623, intron 7 of 10) L1M3|LINE|L1 136307 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 1054-9 chr3 83374798 83375187 + 4 NA Intergenic Intergenic 1388850 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 690-9 chr10 105568801 105569101 + 4 NA Intergenic MER51A|LTR|ERV1 251382 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 704-41 chr2 100182367 100182670 + 4 NA Intergenic Intergenic -25736 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 480-16 chr1 214576346 214576539 + 4 NA Intergenic THE1A-int|LTR|ERVL-MaLR -24840 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 456-153 chr2 64023148 64023334 + 4 NA Intergenic Intergenic -3813 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 630-34 chr15 72984631 72984878 + 4 NA Intergenic MLT2C1|LTR|ERVL -67709 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 694-45 chr15 93683431 93683801 + 4 NA Intergenic Intergenic -172944 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 758-79 chr8 137383280 137383654 + 4 NA Intergenic MIR|SINE|MIR 30121 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 302-14 chr1 112178330 112178424 + 4 NA Intergenic Intergenic 187841 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 973-24 chr8 83940700 83941219 + 4 NA Intergenic L1MA9|LINE|L1 -241828 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 730-54 chr4 117222627 117222925 + 4 NA Intergenic Intergenic -137200 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 582-126 chr5 110218522 110218712 + 4 NA Intergenic L1PA8A|LINE|L1 295298 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 652-52 chr16 79035182 79035474 + 4 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 565409 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 1176-6 chr18 12559770 12560260 + 4 NA intron (NM_020148, intron 2 of 15) L1MA3|LINE|L1 96717 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 468-60 chr12 65036996 65037162 + 4 NA Intergenic L1PA16|LINE|L1 -44788 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 719-65 chr5 96004377 96004663 + 4 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 42519 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 767-29 chr2 160571235 160571617 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -77619 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 1005-7 chr16 31896388 31896798 + 4 NA intron (NR_049749, intron 4 of 4) L1MA6|LINE|L1 22786 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 702-54 chr20 20173492 20173691 + 4 NA intron (NM_015585, intron 13 of 26) L1MC1|LINE|L1 116945 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 1026-13 chr2 144623659 144624169 + 4 NA Intergenic Intergenic -44053 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 905-25 chr4 103495312 103495782 + 4 NA Intergenic Intergenic 70505 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 840-26 chr2 76175881 76176242 + 4 NA Intergenic L1MB7|LINE|L1 -465146 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 558-26 chr10 109229731 109230025 + 4 NA Intergenic Intergenic 693368 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 668-37 chr16 55179899 55180138 + 4 NA Intergenic Intergenic -144541 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 1012-9 chr4 65711349 65711837 + 4 NA Intergenic L1MEf|LINE|L1 -41098 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 1014-15 chr20 40522438 40522975 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR 166530 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 623-39 chr16 26187535 26187738 + 4 NA Intergenic Chap1_Mam|DNA|hAT-Charlie 162399 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 1096-21 chr8 136972606 136972985 + 4 NA Intergenic L1MEg|LINE|L1 440793 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 631-66 chr2 68548933 68549118 + 4 NA intron (NM_173545, intron 8 of 9) L1MC5|LINE|L1 81440 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 666-124 chr9 120377962 120378235 + 4 NA Intergenic Intergenic -133048 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 745-33 chr2 213705330 213705665 + 4 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -52570 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 443-284 chr7 111180935 111181067 + 4 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 89874 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 723-21 chr14 39529582 39529876 + 4 NA Intergenic L1MA4|LINE|L1 -97229 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 516-125 chr2 79502264 79502558 + 4 NA Intergenic Intergenic -1567 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 896-4 chr11 70705301 70705742 + 4 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -43680 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 772-25 chr17 3364530 3364795 + 4 NA Intergenic L1M2|LINE|L1 33748 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 537-41 chr11 58651664 58651822 + 4 NA Intergenic L1MA4|LINE|L1 29078 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 924-4 chr1 170921188 170921741 + 4 NA Intergenic L1M1|LINE|L1 -14007 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 235-160 chr2 27860433 27860499 + 4 NA intron (NM_022128, intron 1 of 7) intron (NM_022128, intron 1 of 7) -28243 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 484-208 chr5 37626966 37627161 + 4 NA intron (NM_001345998, intron 10 of 17) L1MA5A|LINE|L1 207759 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 542-13 chr1 232769200 232769431 + 4 NA Intergenic Intergenic -26600 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 723-25 chr17 71925489 71925779 + 4 NA Intergenic Intergenic 100345 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 1519-5 chr7 94822056 94822575 + 4 NA Intergenic L1ME3|LINE|L1 -85279 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 710-32 chr15 71056730 71056930 + 4 NA Intergenic L1ME2|LINE|L1 -84619 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 636-91 chr3 58455025 58455253 + 4 NA Intergenic L1MD2|LINE|L1 -21287 NM_001315536 5162 Hs.161357 NM_000925 ENSG00000168291 PDHB PDHBD|PDHE1-B|PDHE1B|PHE1B pyruvate dehydrogenase E1 beta subunit protein-coding 933-23 chr20 56199612 56199997 + 4 NA Intergenic L2a|LINE|L2 -48928 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 583-56 chr14 60202447 60202604 + 4 NA Intergenic Intergenic -32661 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 581-2 chr1 81536411 81536604 + 4 NA intron (NR_125943, intron 1 of 3) MIR1_Amn|SINE|MIR 21195 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 706-20 chr13 55528886 55529136 + 4 NA Intergenic Intergenic 354557 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 485-322 chrX 64960641 64960804 + 4 NA intron (NM_001178032, intron 1 of 4) L1MB7|LINE|L1 15728 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 520-174 chr21 29670078 29670281 + 4 NA intron (NM_000830, intron 4 of 16) intron (NM_000830, intron 4 of 16) 74139 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 458-227 chr6 126696366 126696586 + 4 NA Intergenic Intergenic 211845 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 953 chr1 50302135 50302560 + 4 NA Intergenic L1ME1|LINE|L1 121096 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 655 chr1 5539588 5539855 + 4 NA Intergenic L1M2|LINE|L1 323020 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 620-23 chr11 48761165 48761465 + 4 NA Intergenic ALR/Alpha|Satellite|centr -270285 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 861-14 chr2 80658756 80659187 + 4 NA Intergenic L1MB3|LINE|L1 345592 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 404-326 chr8 117443671 117443828 + 4 NA Intergenic Intergenic -76964 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 580-165 chr6 77677562 77677857 + 4 NA intron (NM_001322247, intron 1 of 4) intron (NM_001322247, intron 1 of 4) 24670 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 923-16 chr22 27430486 27430918 + 4 NA Intergenic Intergenic 120051 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 824-48 chr8 83613299 83613651 + 4 NA Intergenic Intergenic 209717 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 415-273 chr8 36082149 36082290 + 4 NA Intergenic Intergenic -371899 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 804-31 chr2 72043821 72044088 + 4 NA Intergenic L1MEh|LINE|L1 103908 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 680-21 chr10 84468971 84469204 + 4 NA intron (NM_018999, intron 7 of 10) intron (NM_018999, intron 7 of 10) 43918 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 536-134 chr2 188518208 188518433 + 4 NA intron (NM_001252669, intron 4 of 8) LTR16A2|LTR|ERVL 220828 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 833-34 chr6 137286488 137286987 + 4 NA Intergenic Intergenic -67307 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 942-16 chr2 114202222 114202752 + 4 NA Intergenic Intergenic -222503 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 701-30 chr16 74058492 74058715 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR 156918 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 691-24 chr14 62519132 62519355 + 4 NA Intergenic L1PA13|LINE|L1 -379270 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 444-75 chr15 62837253 62837445 + 4 NA intron (NM_015059, intron 54 of 55) MIRc|SINE|MIR 13392 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 541-190 chr5 128572119 128572281 + 4 NA Intergenic Intergenic -33955 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 876-32 chr6 54478552 54479019 + 4 NA Intergenic L1ME3|LINE|L1 170344 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 1233-6 chr3 115725087 115725475 + 4 NA Intergenic Intergenic 101771 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 698-95 chrX 87348552 87348836 + 4 NA Intergenic Intergenic -169108 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 748-67 chr4 168997813 168998152 + 4 NA intron (NM_032783, intron 4 of 4) intron (NM_032783, intron 4 of 4) 12273 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 425-73 chr12 85971049 85971257 + 4 NA 3' UTR (NM_001351289, exon 6 of 6) 3' UTR (NM_001351289, exon 6 of 6) 96858 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 653-81 chr22 32679862 32680141 + 4 NA intron (NM_003490, intron 6 of 13) L2a|LINE|L2 -120815 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 960-43 chr9 76968388 76968880 + 4 NA Intergenic Intergenic -51021 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 610-112 chr3 31442016 31442204 + 4 NA Intergenic Intergenic -90815 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 417-130 chr2 62604764 62604883 + 4 NA Intergenic L1MD2|LINE|L1 -69055 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 579-173 chr8 119199309 119199486 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -8966 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 593-31 chr12 21705229 21705471 + 4 NA Intergenic L1MA4A|LINE|L1 -47495 NM_002300 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 606-15 chr10 4226349 4226632 + 4 NA intron (NR_108040, intron 2 of 2) intron (NR_108040, intron 2 of 2) 17422 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 690-31 chr13 61646850 61647175 + 4 NA Intergenic L2|LINE|L2 -219066 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 1122-8 chr18 5202010 5202604 + 4 NA Intergenic Charlie30a|DNA|hAT-Charlie -4555 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 898-6 chr12 41685230 41685569 + 4 NA Intergenic L1PB2|LINE|L1 -78790 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 608-73 chr2 133014043 133014300 + 4 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 98614 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 902-39 chr8 65519179 65519682 + 4 NA Intergenic MER33|DNA|hAT-Charlie 43236 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 758-15 chr11 13537116 13537418 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR -41092 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 348-263 chr20 24353030 24353156 + 4 NA Intergenic L1MC4|LINE|L1 -116106 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 873-23 chr3 133972524 133972899 + 4 NA intron (NM_005630, intron 3 of 13) L1MEd|LINE|L1 -42899 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 606-148 chr7 32104410 32104675 + 4 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -33106 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 671-16 chr11 39931558 39931733 + 4 NA Intergenic L2a|LINE|L2 361485 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 600-28 chr12 91198106 91198295 + 4 NA Intergenic L1MB1|LINE|L1 -15383 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 419-96 chr14 66950446 66950627 + 4 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -238904 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 282-296 chr3 59861594 59861669 + 4 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -203134 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 442-296 chr8 121750197 121750331 + 4 NA Intergenic Intergenic -108824 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 490-42 chr10 59776819 59776992 + 4 NA Intergenic THE1A|LTR|ERVL-MaLR -23450 NM_001304732 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 596-26 chr10 53396755 53396987 + 4 NA Intergenic Intergenic -625171 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 1466-2 chr17 33739827 33740449 + 4 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -206378 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 859-32 chr5 61532432 61532766 + 4 NA intron (NM_020928, intron 9 of 13) intron (NM_020928, intron 9 of 13) -105161 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 797-3 chr1 227665450 227665842 + 4 NA intron (NR_102302, intron 5 of 5) intron (NR_102302, intron 5 of 5) 32061 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 680-92 chr4 100943692 100943913 + 4 NA Intergenic Intergenic -268689 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 625-45 chr2 48257725 48257933 + 4 NA Intergenic Intergenic -56853 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 786-16 chr12 34507390 34507694 + 4 NA Intergenic ALR/Alpha|Satellite|centr 485046 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 885-2 chr11 42217855 42218356 + 4 NA intron (NR_038309, intron 4 of 5) intron (NR_038309, intron 4 of 5) 35585 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 448-55 chr12 9115270 9115438 + 4 NA intron (NM_000014, intron 1 of 35) Charlie2b|DNA|hAT-Charlie 875 NM_001347425 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 478-258 chr6 142349607 142349805 + 4 NA intron (NM_198569, intron 2 of 24) MIRb|SINE|MIR 47699 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 600-131 chr8 119936486 119936781 + 4 NA intron (NM_022783, intron 3 of 8) intron (NM_022783, intron 3 of 8) 62911 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 731-82 chrX 97709787 97709969 + 4 NA Intergenic L1MA8|LINE|L1 -145343 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 482-216 chr6 4705602 4705736 + 4 NA promoter-TSS (NM_001368125) promoter-TSS (NM_001368125) -469 NM_001368125 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 1148-12 chr6 97734090 97734402 + 4 NA Intergenic Intergenic -290285 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 711-72 chr8 129072252 129072816 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -106533 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 1294-2 chr19 57977890 57978403 + 4 NA 3' UTR (NM_001348022, exon 7 of 7) 3' UTR (NM_001348022, exon 7 of 7) -3612 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 468-327 chr8 134920886 134921096 + 4 NA Intergenic Intergenic 71056 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 567-195 chr8 126108781 126108959 + 4 NA Intergenic MIR|SINE|MIR -157673 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 609-102 chr5 81452488 81452693 + 4 NA intron (NM_012446, intron 10 of 16) L2|LINE|L2 -58456 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 716-78 chr6 114761754 114761951 + 4 NA Intergenic Intergenic -698975 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 628-120 chr7 55009892 55010106 + 4 NA Intergenic L1MC1|LINE|L1 -9018 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 636-122 chr6 37973911 37974094 + 4 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 154275 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 362-331 chr5 5953228 5953453 + 4 NA Intergenic Intergenic 383952 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 295-64 chr11 4789910 4790043 + 4 NA Intergenic Intergenic 14404 NM_001005177 119695 Hs.553563 NM_001005177 ENSG00000279270 OR52R1 OR11-22 olfactory receptor family 52 subfamily R member 1 (gene/pseudogene) protein-coding 742-10 chr10 44640936 44641287 + 4 NA Intergenic L1M5|LINE|L1 -256014 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 791-32 chr17 72442097 72442418 + 4 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 99446 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 428-94 chr17 67558404 67558533 + 4 NA intron (NM_181671, intron 4 of 9) intron (NM_181671, intron 4 of 9) -86883 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 781-53 chr5 128936224 128936467 + 4 NA Intergenic L1MEc|LINE|L1 -28782 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 1089-7 chr2 222069648 222070181 + 4 NA Intergenic L2c|LINE|L2 -228233 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 709-81 chr6 131056106 131056504 + 4 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) 6940 NM_001431 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 1214-9 chr8 137778336 137778957 + 4 NA Intergenic Intergenic 304899 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 1089-15 chr6 72385191 72385543 + 4 NA intron (NM_001168411, intron 1 of 5) intron (NM_001168411, intron 1 of 5) 18621 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 437-296 chr9 96822045 96822263 + 4 NA intron (NM_001001662, intron 5 of 5) intron (NM_001001662, intron 5 of 5) 32360 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 845-21 chr20 42319972 42320431 + 4 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -365282 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 1055 chr1 56873081 56873519 + 4 NA intron (NM_000562, intron 2 of 10) MIRb|SINE|MIR 18530 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 1417 chr11 70896055 70896711 + 4 NA intron (NM_012309, intron 10 of 24) intron (NM_012309, intron 10 of 24) -24015 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 504-129 chr2 102893554 102893783 + 4 NA intron (NR_135562, intron 2 of 3) intron (NR_135562, intron 2 of 3) 2054 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 736-4 chr1 116868543 116868849 + 4 NA Intergenic Intergenic -41220 NM_020440 5738 Hs.418093 NM_020440 ENSG00000134247 PTGFRN CD315|CD9P-1|EWI-F|FPRP|SMAP-6 prostaglandin F2 receptor inhibitor protein-coding 876-12 chr15 27131614 27131993 + 4 NA intron (NM_001270873, intron 3 of 5) L1M2|LINE|L1 29516 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 959-14 chr17 13688445 13688829 + 4 NA Intergenic AluJb|SINE|Alu -86708 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 656-3 chr1 39752770 39753081 + 4 NA non-coding (NR_036543, exon 9 of 10) non-coding (NR_036543, exon 9 of 10) 14080 NR_036543 10450 Hs.524690 NM_006112 ENSG00000084072 PPIE CYP-33|CYP33 peptidylprolyl isomerase E protein-coding 732-77 chr5 102890084 102890294 + 4 NA intron (NR_033440, intron 2 of 23) L1MC5a|LINE|L1 24366 NR_033440 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 654-59 chr19 51996420 51996706 + 4 NA intron (NM_198480, intron 5 of 5) L2a|LINE|L2 -9723 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 682-28 chr14 42409683 42409966 + 4 NA Intergenic L1M4b|LINE|L1 802968 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 797-30 chr2 187171423 187171814 + 4 NA Intergenic MER52-int|LTR|ERV1 276634 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 630-6 chr10 11020515 11020836 + 4 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 1919 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 730-77 chr8 83839279 83839616 + 4 NA Intergenic Intergenic -343340 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 986-18 chr2 53294643 53295044 + 4 NA Intergenic L1MA2|LINE|L1 -472940 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 656-45 chr17 54408444 54408637 + 4 NA Intergenic Intergenic -492151 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 535-28 chr10 69600350 69600548 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -27027 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 514-13 chr1 180298430 180298690 + 4 NA intron (NM_032360, intron 7 of 7) intron (NM_032360, intron 7 of 7) -23879 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 718-62 chr4 42258563 42258932 + 4 NA Intergenic L1MA9|LINE|L1 -106092 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 547-251 chr8 131092104 131092380 + 4 NA Intergenic Intergenic -51333 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 623-6 chr1 84713635 84713914 + 4 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -23306 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 695-10 chr10 6006745 6007002 + 4 NA Intergenic MER4D0|LTR|ERV1 -28132 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 904-49 chrX 115410309 115410812 + 4 NA Intergenic Intergenic 120845 NM_001318840 51213 Hs.242183 NM_016383 ENSG00000102021 LUZP4 CT-28|CT-8|CT28|HOM-TES-85 leucine zipper protein 4 protein-coding 557-32 chr11 40624943 40625205 + 4 NA intron (NM_020929, intron 2 of 4) MIR|SINE|MIR -331944 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1133-8 chr5 37564901 37565425 + 4 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 185845 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 378-362 chr6 14029922 14030143 + 4 NA Intergenic Intergenic -87224 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 278-338 chr5 55225349 55225442 + 4 NA intron (NM_001190787, intron 3 of 6) intron (NM_001190787, intron 3 of 6) 1920 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 684-9 chr1 159245480 159245874 + 4 NA Intergenic L1MA7|LINE|L1 40802 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 669-53 chr2 108135650 108135976 + 4 NA Intergenic L1MA2|LINE|L1 82028 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 807-42 chr5 37907140 37907463 + 4 NA Intergenic Intergenic -41190 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 233-343 chr6 125680479 125680547 + 4 NA intron (NR_038906, intron 1 of 3) intron (NR_038906, intron 1 of 3) 6160 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 929-18 chr2 13739691 13740093 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 661066 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 650-128 chr8 101340106 101340349 + 4 NA Intergenic L1MC1|LINE|L1 -28666 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 524-185 chr4 185626484 185626675 + 4 NA intron (NM_021069, intron 12 of 20) intron (NM_021069, intron 12 of 20) 30167 NM_001145675 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 336-429 chr4 115238457 115238556 + 4 NA Intergenic Intergenic -124886 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 677-70 chr6 49132522 49132777 + 4 NA Intergenic Intergenic 330604 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 614-55 chr2 106940383 106940667 + 4 NA Intergenic Intergenic -53416 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 867-41 chr6 149183647 149184151 + 4 NA Intergenic L1MEc|LINE|L1 -34025 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 634-151 chr8 51301590 51301827 + 4 NA Intergenic L1PA16|LINE|L1 507737 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 464-172 chr3 131600965 131601147 + 4 NA intron (NM_130808, intron 7 of 15) intron (NM_130808, intron 7 of 15) -98085 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 848-5 chr10 32602253 32602594 + 4 NA intron (NM_001321115, intron 19 of 43) L1M4|LINE|L1 156283 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 676-100 chr6 16813594 16813839 + 4 NA Intergenic MIR3|SINE|MIR -52226 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 861-18 chr20 39565669 39566192 + 4 NA Intergenic LTR16A|LTR|ERVL -341182 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 535-151 chr20 5641140 5641387 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR -30257 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 511-230 chr6 68859994 68860199 + 4 NA intron (NM_001704, intron 3 of 31) Charlie1a|DNA|hAT-Charlie 224814 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 490-137 chr2 48836698 48836870 + 4 NA Intergenic L1MA6|LINE|L1 -81060 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 990-24 chr8 138418961 138419509 + 4 NA intron (NM_001362965, intron 1 of 19) L1PA15|LINE|L1 78026 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 747-34 chr2 135305378 135305643 + 4 NA intron (NM_001286569, intron 8 of 21) L1M2|LINE|L1 168882 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 658-56 chr18 4668465 4668819 + 4 NA Intergenic L1PA15|LINE|L1 -213335 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 859-13 chr15 60864970 60865332 + 4 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 183582 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 1039-4 chr12 4065244 4065904 + 4 NA Intergenic L1MC1|LINE|L1 -192126 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 953-10 chr17 32582222 32582713 + 4 NA intron (NM_015194, intron 21 of 21) L1ME1|LINE|L1 95474 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 891-25 chr4 111456342 111456696 + 4 NA Intergenic MIR3|SINE|MIR -595872 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 2699 chr11 104309265 104310340 + 4 NA Intergenic AluYa5|SINE|Alu -145655 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 215-249 chr5 24347793 24347886 + 4 NA Intergenic L1ME3F|LINE|L1 297139 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 332-213 chr18 41015850 41015981 + 4 NA Intergenic L1MA6|LINE|L1 504762 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 827-35 chr3 169901339 169901671 + 4 NA Intergenic L1MEc|LINE|L1 -10067 NR_130713 344658 Hs.439922 NM_182610 ENSG00000187033 SAMD7 - sterile alpha motif domain containing 7 protein-coding 678-67 chr3 26589505 26589778 + 4 NA Intergenic Intergenic -33165 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 1190-2 chr2 82577195 82577727 + 4 NA Intergenic Intergenic -279342 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 424-29 chr10 74835875 74836047 + 4 NA intron (NM_001370142, intron 1 of 16) L1MB5|LINE|L1 9361 NM_001370144 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 751-68 chr6 47464563 47464942 + 4 NA Intergenic L1ME3A|LINE|L1 -13037 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 543-246 chr8 109844769 109844938 + 4 NA Intergenic L1MA4A|LINE|L1 130918 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 864 chr1 175100169 175100665 + 4 NA intron (NM_022093, intron 9 of 18) LTR78|LTR|ERV1 32584 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 591-105 chr4 30357209 30357458 + 4 NA Intergenic L1PA15|LINE|L1 -363036 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 492-198 chr4 142657983 142658183 + 4 NA intron (NM_003866, intron 2 of 26) MER61-int|LTR|ERV1 188452 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 481-181 chr21 16854426 16854632 + 4 NA Intergenic Intergenic 264292 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 642-12 chr10 78378488 78378719 + 4 NA Intergenic Intergenic 111261 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 1076-20 chr5 33384095 33384580 + 4 NA Intergenic L2a|LINE|L2 -56359 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 546-4 chr1 70499330 70499560 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 88177 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 494-114 chr19 13544231 13544411 + 4 NA Intergenic L1MA2|LINE|L1 -37842 NM_023035 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 653-111 chr7 48216980 48217297 + 4 NA intron (NM_152701, intron 3 of 61) L1P5|LINE|L1 45680 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 790 chr1 115363052 115363329 + 4 NA intron (NR_157569, intron 1 of 1) intron (NR_157569, intron 1 of 1) -24954 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 497-275 chr8 80386526 80386734 + 4 NA Intergenic Intergenic -98963 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 676-66 chr2 185051660 185051917 + 4 NA Intergenic L1MA6|LINE|L1 115284 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 664-4 chr1 34893387 34893763 + 4 NA intron (NM_001080418, intron 5 of 11) L1M4a2|LINE|L1 -33826 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 549-59 chr14 56907528 56907769 + 4 NA intron (NR_029385, intron 3 of 3) intron (NR_029385, intron 3 of 3) 94490 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 438-269 chr8 59486170 59486333 + 4 NA Intergenic Intergenic 367041 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 1075 chr1 114943628 114944245 + 4 NA intron (NM_001282542, intron 23 of 30) intron (NM_001282542, intron 23 of 30) -85888 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 1647-2 chr14 42783503 42784374 + 4 NA Intergenic L1M5|LINE|L1 1177082 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 480-61 chr13 54467414 54467590 + 4 NA Intergenic Intergenic -155454 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 1207-10 chr7 50837564 50838241 + 4 NA Intergenic Intergenic -44449 NM_001371008 857-20 chr14 87515584 87516023 + 4 NA Intergenic Intergenic 139491 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 635-64 chr3 4335011 4335244 + 4 NA Intergenic Intergenic 31823 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 665-89 chr7 33840629 33840850 + 4 NA Intergenic L4_B_Mam|LINE|RTE-X -64176 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 432-115 chr2 11210740 11210904 + 4 NA intron (NM_001321643, intron 18 of 32) intron (NM_001321643, intron 18 of 32) 55355 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 661-96 chrX 117078244 117078427 + 4 NA Intergenic PRIMA41-int|LTR|ERV1 -260475 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 462-244 chr5 178127444 178127593 + 4 NA Intergenic Intergenic -3443 NM_001288794 64777 Hs.27222 NM_022762 ENSG00000145916 RMND5B GID2|GID2B required for meiotic nuclear division 5 homolog B protein-coding 1124-11 chr7 53886502 53886890 + 4 NA Intergenic Intergenic -74765 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 741-34 chr20 8235816 8236283 + 4 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) -12655 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 960-30 chr5 63159558 63160031 + 4 NA Intergenic L1MC2|LINE|L1 580975 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 1056-23 chr9 135094816 135095323 + 4 NA intron (NM_001282611, intron 2 of 5) intron (NM_001282611, intron 2 of 5) 7401 NM_001282611 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 628-130 chr8 79040116 79040414 + 4 NA Intergenic Tigger13a|DNA|TcMar-Tigger 202736 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 626-65 chr2 75206797 75207041 + 4 NA Intergenic L1PA12|LINE|L1 -7399 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 489-112 chr17 74061593 74061820 + 4 NA Intergenic Intergenic -141972 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 1096-17 chr7 15792078 15792633 + 4 NA Intergenic L1MA3|LINE|L1 103977 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 648-54 chr16 80662715 80662909 + 4 NA intron (NM_152342, intron 2 of 6) L2b|LINE|L2 -90004 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 648-75 chr2 145003935 145004261 + 4 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 336131 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 546-235 chr8 87250391 87250541 + 4 NA intron (NM_173538, intron 6 of 10) L1MA4|LINE|L1 384051 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 844-15 chr12 58372013 58372405 + 4 NA Intergenic Intergenic -219493 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 745-15 chr15 93270994 93271354 + 4 NA Intergenic Intergenic 65108 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 622-89 chr3 134102574 134102866 + 4 NA Intergenic L1MEc|LINE|L1 -45072 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 876-37 chr8 79851113 79851521 + 4 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 20420 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 657-13 chr10 58692591 58692853 + 4 NA intron (NM_001080512, intron 2 of 20) Tigger6b|DNA|TcMar-Tigger -22293 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 800-4 chr1 147441057 147441524 + 4 NA intron (NR_038423, intron 3 of 3) L1MCc|LINE|L1 76585 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 508-159 chr3 169870007 169870201 + 4 NA promoter-TSS (NM_001277128) promoter-TSS (NM_001277128) -169 NM_001277127 79782 Hs.411295 NM_024727 ENSG00000114248 LRRC31 HEL-S-293 leucine rich repeat containing 31 protein-coding 465-2 chr1 14352219 14352363 + 4 NA intron (NR_149058, intron 3 of 4) intron (NR_149058, intron 3 of 4) 67682 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 749-7 chr1 181703817 181704143 + 4 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 220463 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 792-64 chrX 14233143 14233494 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -10947 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 853-35 chr6 133123759 133124112 + 4 NA Intergenic AluSx|SINE|Alu 35855 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 736-11 chr10 31173114 31173428 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -14612 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 700-101 chr9 129540539 129540817 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 52018 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 740-59 chr4 37168266 37168724 + 4 NA Intergenic MIR|SINE|MIR 73496 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 572-181 chr8 131733107 131733273 + 4 NA Intergenic L1MCa|LINE|L1 -170903 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 910-8 chr11 4372647 4373090 + 4 NA Intergenic L1MA8|LINE|L1 -4482 NM_001005161 143496 Hs.447463 NM_001005161 ENSG00000221996 OR52B4 OR11-3 olfactory receptor family 52 subfamily B member 4 (gene/pseudogene) protein-coding 573-43 chr11 96510410 96510741 + 4 NA intron (NR_135097, intron 1 of 3) intron (NR_135097, intron 1 of 3) 2150 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1103-12 chr7 61773285 61773710 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1530559 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 721-66 chr4 147442561 147442977 + 4 NA Intergenic Intergenic -38148 NM_001166055 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 808-23 chr18 76330002 76330353 + 4 NA Intergenic L1MA5|LINE|L1 120667 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 784-28 chr2 109444869 109445372 + 4 NA intron (NM_001099289, intron 7 of 9) L1MEi|LINE|L1 -131495 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 884-35 chr4 65097164 65097655 + 4 NA Intergenic Intergenic -92909 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 752-4 chr1 98829786 98830096 + 4 NA Intergenic L1ME3|LINE|L1 168220 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 590-124 chr4 59706963 59707151 + 4 NA Intergenic Intergenic 693484 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 716-83 chr7 81070412 81070761 + 4 NA Intergenic Intergenic -148197 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 756-7 chr10 82448644 82449108 + 4 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -215956 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 1433-4 chr4 30445530 30446214 + 4 NA Intergenic Intergenic -274497 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1467-3 chr14 60370671 60371483 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 47881 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 880-28 chr4 33052172 33052548 + 4 NA Intergenic Intergenic 701322 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 540-146 chr3 99276162 99276320 + 4 NA Intergenic L1MA7|LINE|L1 -362353 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 735-46 chr2 103194828 103195162 + 4 NA Intergenic L1PA13|LINE|L1 -210566 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 608-155 chr8 85352729 85352999 + 4 NA intron (NM_001738, intron 1 of 8) AluSz6|SINE|Alu -11150 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 658-21 chr10 104907469 104907712 + 4 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -241374 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 666-13 chr10 115415966 115416258 + 4 NA intron (NM_207303, intron 20 of 28) L1MC4a|LINE|L1 322747 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 434-131 chr2 15066570 15066778 + 4 NA Intergenic L1MB1|LINE|L1 433957 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 903-11 chr12 133050501 133050873 + 4 NA intron (NM_001127372, intron 4 of 4) intron (NM_001127372, intron 4 of 4) 13105 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 756-33 chr20 31281631 31281942 + 4 NA Intergenic L1PREC2|LINE|L1 24122 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 1969 chr7 14086118 14087182 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie -95225 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 913 chr1 23879595 23879953 + 4 NA intron (NM_001841, intron 1 of 1) L2a|LINE|L2 -11405 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 575-137 chr4 62740492 62740707 + 4 NA Intergenic Intergenic -578834 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 290-245 chr20 31052017 31052122 + 4 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -205595 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 712-34 chr17 61598333 61598617 + 4 NA Intergenic Intergenic -7256 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 982-18 chr21 20567136 20567450 + 4 NA Intergenic Intergenic 235815 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 714-52 chr4 58936748 58937074 + 4 NA Intergenic Intergenic -47371 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 587-17 chr10 85376206 85376449 + 4 NA Intergenic Intergenic 56445 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 368-195 chr17 70586034 70586202 + 4 NA Intergenic MLT1F2|LTR|ERVL-MaLR 416583 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 694-64 chr2 76265163 76265521 + 4 NA Intergenic L2c|LINE|L2 -554427 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 655-87 chr4 61288916 61289293 + 4 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 86932 NM_001371342 743-5 chr1 106724454 106724821 + 4 NA Intergenic Intergenic -93602 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 609-97 chr5 44982263 44982593 + 4 NA Intergenic Intergenic 173481 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 3587 chr10 31112430 31114535 + 4 NA Intergenic (TATTT)n|Simple_repeat|Simple_repeat -74401 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 723-49 chr3 62379030 62379354 + 4 NA Intergenic Intergenic -5642 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 488-143 chr2 123584976 123585135 + 4 NA Intergenic (TTCT)n|Simple_repeat|Simple_repeat 440119 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1274-3 chr20 42873370 42873892 + 4 NA intron (NM_133170, intron 2 of 31) MER33|DNA|hAT-Charlie -95112 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 909-17 chr2 239773295 239773793 + 4 NA intron (NR_037808, intron 1 of 2) intron (NR_037808, intron 1 of 2) 10684 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 1167-10 chr2 17388711 17389073 + 4 NA Intergenic Intergenic 129548 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 1639-6 chr8 130828817 130829499 + 4 NA intron (NM_001115, intron 12 of 17) HUERS-P3-int|LTR|ERV1 211751 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 607-36 chr13 86784634 86784811 + 4 NA Intergenic Intergenic -127198 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 665-92 chr7 51519058 51519292 + 4 NA Intergenic Intergenic -125919 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 603-92 chr2 124514780 124515070 + 4 NA intron (NM_130773, intron 8 of 23) intron (NM_130773, intron 8 of 23) 489638 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 852-36 chr3 189066246 189066653 + 4 NA Intergenic L1MA3|LINE|L1 -105522 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 1312-3 chr8 138702844 138703505 + 4 NA intron (NM_152888, intron 31 of 64) intron (NM_152888, intron 31 of 64) -205444 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1160-8 chr5 11825475 11825980 + 4 NA intron (NM_001288717, intron 1 of 20) L1ME1|LINE|L1 78719 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 808-53 chr7 62759500 62759825 + 4 NA Intergenic ALR/Alpha|Satellite|centr 544394 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 988-2 chr10 21700189 21700474 + 4 NA intron (NM_004641, intron 14 of 23) L1MA4A|LINE|L1 166159 NM_001195630 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 331-358 chr3 94744326 94744473 + 4 NA Intergenic Intergenic -193864 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 458-54 chr12 118823637 118823786 + 4 NA intron (NR_134997, intron 2 of 2) (TA)n|Simple_repeat|Simple_repeat 9825 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 374-215 chr20 2982551 2982730 + 4 NA intron (NM_002836, intron 10 of 27) intron (NM_002836, intron 10 of 27) 59433 NM_080841 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 1660 chr11 50427359 50428096 + 4 NA Intergenic ALR/Alpha|Satellite|centr 18580 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 787-28 chr3 45314120 45314596 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -74218 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 405-84 chr14 52182232 52182430 + 4 NA Intergenic Intergenic -85367 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 851-17 chr19 36440892 36441241 + 4 NA Intergenic Intergenic 19892 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 684-122 chr8 127677729 127677944 + 4 NA Intergenic MIR|SINE|MIR 56131 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 846-57 chr8 69357766 69358011 + 4 NA Intergenic L1ME3Cz|LINE|L1 90356 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 926-10 chr17 74557776 74558086 + 4 NA Intergenic Intergenic 9412 NM_001324073 100130520 NM_001324073 ENSG00000284690 CD300H CD300Hs CD300H molecule (gene/pseudogene) protein-coding 1121-2 chr11 71510395 71510867 + 4 NA Intergenic Intergenic -16636 NM_001012503 440050 Hs.710675 NM_001012503 ENSG00000244411 KRTAP5-7 KRTAP5-3|KRTAP5.7 keratin associated protein 5-7 protein-coding 513-41 chr11 16644765 16644917 + 4 NA intron (NM_001367872, intron 2 of 16) intron (NM_001367872, intron 2 of 16) 93636 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 1143-8 chr2 213475742 213476349 + 4 NA intron (NR_047660, intron 8 of 14) MER52-int|LTR|ERV1 191581 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 672-16 chr11 54884148 54884431 + 4 NA Intergenic ALR/Alpha|Satellite|centr 177457 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 364-38 chr1 229708538 229708655 + 4 NA Intergenic Intergenic 82349 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 809-37 chr5 6085214 6085740 + 4 NA Intergenic Intergenic 251815 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 771-83 chr8 108893024 108893285 + 4 NA Intergenic Intergenic -105560 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 1250-5 chr8 36377775 36378284 + 4 NA Intergenic Intergenic -406345 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 929-5 chr11 12489584 12489925 + 4 NA intron (NM_018222, intron 4 of 12) L1MEd|LINE|L1 112183 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 772-47 chr7 6197842 6198395 + 4 NA intron (NM_001367581, intron 1 of 13) AluJr|SINE|Alu -25981 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 926-28 chr8 142309218 142309539 + 4 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 93804 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 697-20 chr13 46735460 46735854 + 4 NA intron (NM_001164213, intron 18 of 18) intron (NM_001164213, intron 18 of 18) 61504 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 268-422 chr8 133341442 133341521 + 4 NA Intergenic MER20B|DNA|hAT-Charlie -44177 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 825-37 chr4 63461443 63461920 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR 947769 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 526-78 chr14 78871075 78871274 + 4 NA intron (NM_004796, intron 7 of 16) L1MA4|LINE|L1 -328808 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 584-35 chr12 25736189 25736432 + 4 NA Intergenic Intergenic -87732 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 1123-17 chr6 56017885 56018408 + 4 NA Intergenic Intergenic 73516 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 764-10 chr10 69547529 69547761 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR 25777 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 589-29 chr13 111921584 111921772 + 4 NA Intergenic CpG 28182 NR_120401 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 900-39 chr7 43035492 43035988 + 4 NA Intergenic Charlie2b|DNA|hAT-Charlie -76907 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 630-86 chr3 83697850 83698173 + 4 NA Intergenic L1MA8|LINE|L1 1171564 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 506-201 chr4 37032664 37032894 + 4 NA Intergenic Intergenic 31000 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 1095-2 chr10 83431528 83431990 + 4 NA Intergenic Intergenic 245330 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 672-25 chr14 25626667 25626958 + 4 NA Intergenic MIRc|SINE|MIR -576515 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 732-33 chr17 31552761 31553065 + 4 NA Intergenic Intergenic -7083 NR_029710 406968 NR_029710 ENSG00000207614 MIR193A MIRN193|MIRN193A|mir-193a microRNA 193a ncRNA 768-31 chr21 27185094 27185414 + 4 NA Intergenic Intergenic -218166 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 1174-4 chr2 35133651 35134229 + 4 NA Intergenic Intergenic -337465 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 1521 chr10 121759256 121760087 + 4 NA intron (NM_001001976, intron 11 of 11) AluY|SINE|Alu -161213 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 795-12 chr10 76073460 76073768 + 4 NA intron (NM_001305581, intron 5 of 6) L1ME4c|LINE|L1 290853 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 588-28 chr12 71093669 71093845 + 4 NA Intergenic L1MA2|LINE|L1 64052 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 669-36 chr16 83156100 83156404 + 4 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -165954 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 679-75 chr3 150076506 150076721 + 4 NA Intergenic MLT1H2|LTR|ERVL-MaLR -19830 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 702-105 chr8 135110050 135110416 + 4 NA Intergenic L1MA1|LINE|L1 -123898 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 549-27 chr10 67532382 67532579 + 4 NA intron (NM_001127384, intron 4 of 17) intron (NM_001127384, intron 4 of 17) -129070 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 583-25 chr10 130966118 130966372 + 4 NA Intergenic Intergenic -3577 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 750-68 chr8 62415315 62415621 + 4 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 166614 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 1055-6 chr17 33638092 33638683 + 4 NA intron (NM_001094, intron 1 of 9) LTR8A|LTR|ERV1 -104627 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 592-158 chr7 3422918 3423078 + 4 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 121746 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 622-145 chr8 134169585 134169785 + 4 NA Intergenic Intergenic 283189 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 573-57 chr12 130292287 130292488 + 4 NA Intergenic L2a|LINE|L2 -45500 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 425-107 chr17 11018399 11018667 + 4 NA Intergenic AluSq2|SINE|Alu -180446 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 828-18 chr15 57976144 57976480 + 4 NA intron (NM_170696, intron 6 of 11) L1PA7|LINE|L1 37711 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 482-180 chr4 37277675 37277892 + 4 NA intron (NM_001144990, intron 1 of 6) L1M4a2|LINE|L1 33040 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 903-10 chr12 132932487 132932858 + 4 NA intron (NM_183238, intron 4 of 4) intron (NM_183238, intron 4 of 4) 23634 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 810-6 chr11 50393563 50393975 + 4 NA Intergenic ALR/Alpha|Satellite|centr -15378 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 909-6 chr11 61932275 61932683 + 4 NA Intergenic Intergenic -12195 NM_001271686 5866 Hs.13759 NM_013401 ENSG00000167994 RAB3IL1 GRAB RAB3A interacting protein like 1 protein-coding 492-216 chr5 117882413 117882560 + 4 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 152125 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 552-177 chr5 124908326 124908581 + 4 NA Intergenic Intergenic -128378 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 658-109 chr6 74006716 74007023 + 4 NA Intergenic Intergenic -62582 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 690-59 chr2 145707413 145707655 + 4 NA Intergenic L1MA9|LINE|L1 -879523 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 667-12 chr10 43488601 43488808 + 4 NA Intergenic L2a|LINE|L2 51593 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 628-20 chr10 4606555 4606799 + 4 NA Intergenic Intergenic -49479 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 960-22 chr2 124690165 124690482 + 4 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 665036 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 253-363 chr6 106711770 106711855 + 4 NA Intergenic L1MEj|LINE|L1 16327 NR_149100 105377926 Hs.635821 NR_149100 ENSG00000229654 LINC02526 - long intergenic non-protein coding RNA 2526 ncRNA 550-131 chr20 17714723 17714936 + 4 NA intron (NM_001014977, intron 1 of 2) MER46C|DNA|TcMar-Tigger 14881 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 965-10 chr2 183493193 183493576 + 4 NA Intergenic L1M4b|LINE|L1 368941 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 551-30 chr11 42211422 42211598 + 4 NA intron (NR_038309, intron 4 of 5) ERVL-E-int|LTR|ERVL 42180 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 527-98 chr15 97569311 97569464 + 4 NA Intergenic Intergenic -8689 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 519-117 chr2 144035702 144035883 + 4 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 98725 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 606-171 chr8 138282863 138283039 + 4 NA intron (NM_015912, intron 3 of 19) AluSc|SINE|Alu -199406 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 980-15 chr7 37661122 37661595 + 4 NA Intergenic Intergenic -22408 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 1256 chr10 33589398 33589990 + 4 NA Intergenic L1ME1|LINE|L1 182986 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 731-16 chr11 81478129 81478319 + 4 NA Intergenic Intergenic 412612 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 308-495 chr8 88716298 88716400 + 4 NA Intergenic Intergenic -388866 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 561-141 chr3 197886403 197886632 + 4 NA non-coding (NR_158582, exon 21 of 21) non-coding (NR_158582, exon 21 of 21) 63408 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 712-90 chr7 69384630 69384994 + 4 NA Intergenic Intergenic 212812 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 756-36 chr22 47415714 47416103 + 4 NA Intergenic MLT1G3|LTR|ERVL-MaLR 70337 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 550-72 chr14 46132815 46133027 + 4 NA intron (NR_102702, intron 1 of 3) L1M5|LINE|L1 68762 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 295-263 chr21 14055312 14055477 + 4 NA Intergenic Intergenic -74950 NR_027270 391267 Hs.364456 NM_153750 ENSG00000215559 ANKRD20A11P C21orf81 ankyrin repeat domain 20 family member A11, pseudogene pseudo 486-134 chr2 38412694 38412926 + 4 NA Intergenic Intergenic -18484 NR_146454 100996902 Hs.128280 NR_146454 ENSG00000235009 LINC01883 - long intergenic non-protein coding RNA 1883 ncRNA 1868 chr15 76025960 76026942 + 4 NA Intergenic L1M2c|LINE|L1 -14027 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 572-190 chr9 30946519 30946843 + 4 NA Intergenic L1MEc|LINE|L1 434809 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 508-128 chr20 13251102 13251329 + 4 NA intron (NM_080826, intron 1 of 5) intron (NM_080826, intron 1 of 5) -11528 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 543-90 chr16 51312654 51312853 + 4 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -161481 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 1118-3 chr11 113390764 113391309 + 4 NA intron (NM_178510, intron 1 of 7) L2a|LINE|L2 3257 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 608-91 chr21 29962052 29962294 + 4 NA Intergenic LTR1F1|LTR|ERV1 -22121 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 1060-17 chr5 63890118 63890567 + 4 NA Intergenic Intergenic 71950 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1214-6 chr5 92975865 92976397 + 4 NA Intergenic Intergenic 595212 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 673-77 chr3 80178540 80178819 + 4 NA Intergenic L2b|LINE|L2 -410681 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 643-92 chr5 46268749 46269003 + 4 NA Intergenic ALR/Alpha|Satellite|centr -572496 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 776-21 chr18 33511046 33511402 + 4 NA Intergenic L1M1|LINE|L1 -66995 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 477-98 chr14 88791258 88791391 + 4 NA intron (NM_183387, intron 1 of 42) intron (NM_183387, intron 1 of 42) 1629 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 889-30 chr5 46059504 46060178 + 4 NA Intergenic ALR/Alpha|Satellite|centr -363461 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 709-17 chr11 101770432 101770725 + 4 NA Intergenic Intergenic -144432 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 1169-5 chr17 55649886 55650462 + 4 NA Intergenic Intergenic 72690 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 694-75 chr20 48012302 48012502 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR -22285 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 701-62 chr3 81946025 81946351 + 4 NA Intergenic Intergenic -39954 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 1082 chr1 111099880 111100187 + 4 NA Intergenic L1PBa1|LINE|L1 -39350 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 720-92 chr8 139118301 139118664 + 4 NA Intergenic Intergenic -204441 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 731-46 chr3 117329044 117329254 + 4 NA Intergenic L1MC3|LINE|L1 361776 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 686-57 chr3 117367077 117367341 + 4 NA Intergenic Intergenic 323716 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 912-39 chr6 39260048 39260488 + 4 NA Intergenic L1ME4b|LINE|L1 -30793 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 1097-3 chr11 70793190 70793754 + 4 NA intron (NM_012309, intron 13 of 24) L1ME2|LINE|L1 -69318 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 830-46 chr6 98105308 98105623 + 4 NA Intergenic HSMAR2|DNA|TcMar-Mariner 80934 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 804-24 chr16 73449023 73449340 + 4 NA Intergenic HAL1b|LINE|L1 62376 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 598-109 chr5 89859892 89860195 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 156677 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 523-58 chr11 116122327 116122539 + 4 NA Intergenic L1MB3|LINE|L1 -362233 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 1115-14 chr4 76327023 76327501 + 4 NA intron (NM_001042784, intron 21 of 23) HAL1b|LINE|L1 21236 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 574-188 chr8 128414874 128415101 + 4 NA intron (NR_121672, intron 5 of 7) intron (NR_121672, intron 5 of 7) 149692 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 559-12 chr10 13545706 13545931 + 4 NA Intergenic L2c|LINE|L2 -16804 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 893-19 chr15 100453552 100454043 + 4 NA intron (NM_001290341, intron 13 of 13) L1MA4A|LINE|L1 80858 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 1704 chr4 32293500 32294045 + 4 NA Intergenic Intergenic -57266 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 554-114 chr2 71773111 71773428 + 4 NA Intergenic L1PA16|LINE|L1 306570 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 548-29 chr10 131188995 131189158 + 4 NA intron (NM_174937, intron 4 of 11) L1ME4b|LINE|L1 93858 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 462-237 chr5 141416086 141416358 + 4 NA TTS (NM_032090) TTS (NM_032090) -1455 NM_018927 56099 Hs.368160 NM_018927 ENSG00000254122 PCDHGB7 ME6|PCDH-GAMMA-B7 protocadherin gamma subfamily B, 7 protein-coding 988-13 chr2 4190025 4190434 + 4 NA Intergenic Intergenic 216068 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 1087-21 chr8 130930799 130931240 + 4 NA intron (NM_001115, intron 5 of 17) L1MA8|LINE|L1 109890 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 943-4 chr10 76485752 76486184 + 4 NA intron (NM_001305581, intron 6 of 6) L1MD2|LINE|L1 -402076 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 626-42 chr16 26715272 26715459 + 4 NA Intergenic AluSx4|SINE|Alu -351562 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 634-24 chr10 123544512 123544801 + 4 NA Intergenic Intergenic -121699 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 631-49 chr16 80781920 80782219 + 4 NA intron (NM_152342, intron 1 of 6) L1MB5|LINE|L1 22529 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 789-6 chr10 83359495 83359854 + 4 NA Intergenic Intergenic 317415 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 691-94 chr9 80972681 80973050 + 4 NA Intergenic Intergenic 716670 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 596-150 chr7 51856174 51856346 + 4 NA Intergenic LTR16E2|LTR|ERVL -463004 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 909-11 chr18 3681600 3681993 + 4 NA intron (NM_001308390, intron 4 of 10) MSTA|LTR|ERVL-MaLR 78059 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 562-16 chr10 16903417 16903694 + 4 NA intron (NM_001081, intron 51 of 66) L1MEd|LINE|L1 -86101 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 858-37 chr5 107480140 107480534 + 4 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 190600 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 701-51 chr20 40009690 40009911 + 4 NA Intergenic L1ME3|LINE|L1 5339 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 482-51 chr11 60383357 60383538 + 4 NA intron (NM_206938, intron 2 of 5) intron (NM_206938, intron 2 of 5) 4915 NM_206940 58475 Hs.530735 NM_021201 ENSG00000166927 MS4A7 4SPAN2|CD20L4|CFFM4|MS4A8 membrane spanning 4-domains A7 protein-coding 675-31 chr14 81821211 81821472 + 4 NA Intergenic Intergenic -78203 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 462-16 chr1 220672234 220672398 + 4 NA Intergenic Intergenic -18047 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 867-5 chr1 84013542 84013999 + 4 NA Intergenic L1PREC2|LINE|L1 -14638 NM_001350214 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 654-57 chr19 44487422 44487742 + 4 NA intron (NM_001288760, intron 3 of 6) MER41B|LTR|ERV1 12940 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 553-192 chr5 64832192 64832386 + 4 NA intron (NM_005869, intron 10 of 13) Charlie1a|DNA|hAT-Charlie 63359 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 755-48 chr4 171108770 171109129 + 4 NA Intergenic Intergenic 68347 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 601-148 chr8 126331688 126331873 + 4 NA Intergenic MIR3|SINE|MIR 6285 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 725-61 chr8 112403972 112404231 + 4 NA intron (NM_001363185, intron 31 of 66) intron (NM_001363185, intron 31 of 66) -239392 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 504-26 chr10 75323191 75323368 + 4 NA intron (NR_038226, intron 2 of 3) L1ME1|LINE|L1 26896 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 1026-28 chrX 81291679 81292352 + 4 NA intron (NM_003022, intron 3 of 3) MSTA-int|LTR|ERVL-MaLR 89913 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 646 chr1 35162590 35162869 + 4 NA Intergenic AluSx|SINE|Alu 30416 NM_005066 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 700-43 chr19 27702457 27702685 + 4 NA Intergenic ALR/Alpha|Satellite|centr -90860 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 566-90 chr2 81335646 81335834 + 4 NA Intergenic L1MCa|LINE|L1 131206 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 704-81 chr7 155760372 155760579 + 4 NA intron (NM_053043, intron 14 of 17) intron (NM_053043, intron 14 of 17) 48597 NR_132318 6469 Hs.164537 NM_000193 ENSG00000164690 SHH HHG1|HLP3|HPE3|MCOPCB5|SMMCI|ShhNC|TPT|TPTPS sonic hedgehog signaling molecule protein-coding 305-58 chr10 33371590 33371720 + 4 NA Intergenic Intergenic -36750 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 830-32 chr3 37868061 37868303 + 4 NA intron (NM_001008392, intron 1 of 7) L1MD1|LINE|L1 6302 NM_005808 10217 Hs.475963 NM_005808 ENSG00000144677 CTDSPL C3orf8|HYA22|PSR1|RBSP3|SCP3 CTD small phosphatase like protein-coding 420-286 chr8 81199157 81199317 + 4 NA Intergenic Intergenic -81299 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 707-36 chr15 100510198 100510375 + 4 NA intron (NM_001290341, intron 3 of 13) intron (NM_001290341, intron 3 of 13) 34000 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 360-497 chrX 2952931 2953071 + 4 NA intron (NM_001369080, intron 6 of 11) intron (NM_001369080, intron 6 of 11) 11452 NM_001282628 415 Hs.386975 NM_000047 ENSG00000157399 ARSE ASE|CDPX|CDPX1|CDPXR arylsulfatase E protein-coding 470-179 chr3 96216497 96216648 + 4 NA Intergenic MER66-int|LTR|ERV1 -143392 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 662-94 chr8 43722225 43722563 + 4 NA Intergenic ALR/Alpha|Satellite|centr 429952 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 517-254 chr7 110191924 110192078 + 4 NA Intergenic MIRb|SINE|MIR -231788 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 683-43 chr20 59328145 59328446 + 4 NA Intergenic Intergenic 27684 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 929-9 chr12 37938152 37938589 + 4 NA Intergenic ALR/Alpha|Satellite|centr -378404 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1026-20 chr5 95151308 95151637 + 4 NA intron (NM_024717, intron 1 of 22) Tigger2a|DNA|TcMar-Tigger -69606 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 714-79 chrX 94045542 94045744 + 4 NA Intergenic MER4-int|LTR|ERV1 371437 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 363-435 chr8 64520963 64521089 + 4 NA Intergenic Intergenic 56237 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 607-129 chr6 137036972 137037224 + 4 NA intron (NM_001278724, intron 1 of 5) intron (NM_001278724, intron 1 of 5) 7214 NM_001278722 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 851-4 chr10 78163850 78164141 + 4 NA Intergenic Intergenic -84630 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 606-93 chr2 200309197 200309406 + 4 NA intron (NM_001282744, intron 1 of 12) intron (NM_001282744, intron 1 of 12) 351 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 568-115 chr2 141846190 141846402 + 4 NA intron (NM_018557, intron 1 of 90) L1M5|LINE|L1 285405 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 764-24 chr14 48026118 48026486 + 4 NA Intergenic Intergenic -231288 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 750-35 chr2 68857910 68858100 + 4 NA Intergenic MIR1_Amn|SINE|MIR 13392 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 492-267 chr8 123771348 123771545 + 4 NA intron (NM_144963, intron 1 of 23) intron (NM_144963, intron 1 of 23) 3007 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 246-324 chr5 42186469 42186606 + 4 NA Intergenic Intergenic -11192 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 655-43 chr16 54754308 54754621 + 4 NA Intergenic Intergenic 93769 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 804-60 chr6 169416612 169416886 + 4 NA Intergenic L1ME3|LINE|L1 -162635 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 590-120 chr4 32582609 32582850 + 4 NA Intergenic Intergenic 231691 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1060-16 chr5 38743128 38743662 + 4 NA intron (NR_109951, intron 3 of 3) intron (NR_109951, intron 3 of 3) -23122 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 470-59 chr13 34930206 34930340 + 4 NA Intergenic Intergenic -12014 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 693-11 chr1 229675677 229675882 + 4 NA Intergenic Intergenic 49532 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 1223-7 chr2 101586084 101586702 + 4 NA Intergenic L1MA4|LINE|L1 -111281 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 522-190 chr4 47133731 47133949 + 4 NA intron (NM_000812, intron 3 of 8) L1MC4|LINE|L1 102273 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 719-50 chr3 83796362 83796575 + 4 NA Intergenic Intergenic 1073107 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 616-58 chr16 81336999 81337303 + 4 NA intron (NM_022041, intron 1 of 10) intron (NM_022041, intron 1 of 10) 22185 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 476-94 chr15 73135645 73135981 + 4 NA intron (NM_002499, intron 4 of 28) intron (NM_002499, intron 4 of 28) 83329 NM_001172623 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 422-29 chr10 48564461 48564607 + 4 NA intron (NR_144642, intron 2 of 9) intron (NR_144642, intron 2 of 9) 40539 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 1021-4 chr11 55040936 55041562 + 4 NA Intergenic ALR/Alpha|Satellite|centr -220906 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 493-264 chr6 165355041 165355282 + 4 NA intron (NM_006661, intron 19 of 22) intron (NM_006661, intron 19 of 22) -45556 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 651-10 chr1 239225398 239225633 + 4 NA Intergenic L1M2|LINE|L1 -161053 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 1471 chr10 126358251 126359117 + 4 NA intron (NM_001288974, intron 1 of 18) L1MA7|LINE|L1 29793 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 623-56 chr2 34389994 34390229 + 4 NA Intergenic L2b|LINE|L2 -287446 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 920-11 chr15 56587314 56587779 + 4 NA Intergenic L1M4|LINE|L1 -122409 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 830-28 chr21 29652654 29653035 + 4 NA intron (NM_000830, intron 5 of 16) intron (NM_000830, intron 5 of 16) 56804 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 1208-2 chr11 90787511 90788148 + 4 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 81373 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 754-52 chr3 73937335 73937701 + 4 NA Intergenic Intergenic 128274 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 692-39 chr18 4157304 4157531 + 4 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -107185 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 517-245 chr7 13497148 13497368 + 4 NA Intergenic MIRc|SINE|MIR 489256 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 804-8 chr11 3361219 3361656 + 4 NA intron (NM_001242842, intron 4 of 5) L1M4|LINE|L1 17709 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 639-126 chrX 55918834 55919025 + 4 NA intron (NM_001324105, intron 1 of 5) MLT1C|LTR|ERVL-MaLR 10644 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 1510-2 chr8 135014184 135014837 + 4 NA Intergenic MIR|SINE|MIR 164575 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 554-220 chrX 79523133 79523280 + 4 NA Intergenic L1PA15|LINE|L1 -155654 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 450-224 chr4 62735570 62735732 + 4 NA Intergenic Intergenic -573886 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1092-7 chr15 67484551 67484984 + 4 NA intron (NR_147832, intron 15 of 17) AluSx3|SINE|Alu 36206 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 588-107 chr3 191161565 191161969 + 4 NA Intergenic Intergenic -37474 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 643-27 chr12 125937435 125937751 + 4 NA Intergenic Intergenic 45781 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 1317 chr1 76697797 76698519 + 4 NA Intergenic L1ME3D|LINE|L1 81109 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 594-133 chr7 7090261 7090506 + 4 NA non-coding (NR_034022, exon 1 of 1) non-coding (NR_034022, exon 1 of 1) 6403 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 1226-4 chr2 125108138 125108550 + 4 NA Intergenic L1MC3|LINE|L1 1009641 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 571-151 chr7 3224220 3224525 + 4 NA Intergenic L1MCa|LINE|L1 -65799 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 271-235 chr20 55941823 55941929 + 4 NA Intergenic L1PB1|LINE|L1 63643 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 628-29 chr10 124004110 124004346 + 4 NA Intergenic Intergenic 88178 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 888-4 chr10 121196922 121197228 + 4 NA Intergenic Tigger18a|DNA|TcMar-Tigger 334239 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 453-111 chr2 66052876 66053079 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger 305351 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 462-129 chr2 12066861 12067012 + 4 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 59820 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 616-23 chr11 15681130 15681416 + 4 NA intron (NM_001293172, intron 1 of 2) L1ME2|LINE|L1 37388 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 583-70 chr17 70987500 70987731 + 4 NA Intergenic Intergenic 214564 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 930-16 chr2 106628499 106629030 + 4 NA Intergenic Intergenic 141400 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 639-13 chr10 44706956 44707217 + 4 NA Intergenic Intergenic -204230 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 907-11 chr16 73637166 73637706 + 4 NA Intergenic AluSx1|SINE|Alu 250631 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 616-81 chr2 56385593 56385812 + 4 NA 3' UTR (NM_001348512, exon 7 of 7) 3' UTR (NM_001348512, exon 7 of 7) -199932 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 659-17 chr11 95781579 95782000 + 4 NA intron (NM_001330357, intron 5 of 9) intron (NM_001330357, intron 5 of 9) 7993 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 457-166 chr3 161470798 161470959 + 4 NA Intergenic Intergenic -25930 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 409-264 chr6 74563525 74563669 + 4 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 494146 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 553-34 chr11 95408007 95408181 + 4 NA Intergenic Intergenic -175619 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 423-198 chr4 66634914 66635098 + 4 NA Intergenic Intergenic 358182 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 705-71 chr3 176745091 176745371 + 4 NA Intergenic L1ME1|LINE|L1 71770 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 589-113 chr4 83697608 83697774 + 4 NA Intergenic L1MEg|LINE|L1 161583 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 1208-8 chr16 72686241 72687008 + 4 NA Intergenic L1MB2|LINE|L1 -21654 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 928-24 chr5 104471109 104471583 + 4 NA Intergenic L1M4b|LINE|L1 -628128 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 913-14 chr17 16623989 16624285 + 4 NA exon (NM_020787, exon 6 of 6) exon (NM_020787, exon 6 of 6) 29713 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 681-74 chr6 76985394 76985620 + 4 NA Intergenic L1PA13|LINE|L1 -391884 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 1084-10 chr2 29854889 29855481 + 4 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 66401 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 1072-9 chr2 5918270 5918690 + 4 NA Intergenic L1M4|LINE|L1 -14207 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 1361-3 chr19 56579459 56580406 + 4 NA 3' UTR (NM_001001668, exon 6 of 6) 3' UTR (NM_001001668, exon 6 of 6) 12464 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 490-163 chr20 19408015 19408166 + 4 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -123494 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 580-103 chr20 62720764 62720943 + 4 NA intron (NM_002531, intron 1 of 3) L1MEf|LINE|L1 12017 NM_002531 4923 Hs.590869 NM_002531 ENSG00000101188 NTSR1 NTR neurotensin receptor 1 protein-coding 678-86 chr5 50722284 50722707 + 4 NA intron (NM_024615, intron 2 of 25) MLT1J2|LTR|ERVL-MaLR 55081 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 526-60 chr12 60729583 60729794 + 4 NA Intergenic Intergenic 1040318 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 1074-9 chr20 42305245 42305819 + 4 NA intron (NM_133170, intron 12 of 31) Charlie5|DNA|hAT-Charlie -379951 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 758-40 chr2 80699969 80700417 + 4 NA Intergenic Intergenic 386814 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 745-29 chr2 56420635 56420961 + 4 NA Intergenic AluSx1|SINE|Alu -235028 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 723-58 chr5 29370298 29370660 + 4 NA Intergenic Intergenic 25497 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 511-45 chr12 29070627 29070844 + 4 NA Intergenic Intergenic -78543 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 800-12 chr10 76813357 76813818 + 4 NA Intergenic Intergenic -74457 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 725-46 chr5 9809209 9809479 + 4 NA intron (NR_027112, intron 4 of 12) MLT1A|LTR|ERVL-MaLR -45033 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 854-38 chr6 49269759 49270134 + 4 NA Intergenic L1MC5|LINE|L1 193307 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 474-11 chr1 116254888 116255070 + 4 NA Intergenic Intergenic -118265 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 615-29 chr13 38961603 38961874 + 4 NA Intergenic Intergenic 29093 NM_145286 161003 Hs.327794 NM_145286 ENSG00000133115 STOML3 Epb7.2l|SRO stomatin like 3 protein-coding 1095-4 chr12 118686858 118687280 + 4 NA Intergenic L1PB4|LINE|L1 74610 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 834-25 chr20 54503903 54504320 + 4 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 28518 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 836-53 chr6 84956023 84956615 + 4 NA Intergenic L1PA4|LINE|L1 -191721 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 1200-6 chr5 41008092 41008734 + 4 NA intron (NM_173489, intron 33 of 41) intron (NM_173489, intron 33 of 41) 62929 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 938-20 chr4 167766896 167767288 + 4 NA Intergenic L1ME1|LINE|L1 -325445 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 473-223 chr5 110964186 110964317 + 4 NA Intergenic Intergenic -105829 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 894-16 chr17 83142717 83143059 + 4 NA Intergenic L1MEf|LINE|L1 61742 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 937-18 chr22 36563875 36564153 + 4 NA 3' UTR (NM_006078, exon 4 of 4) 3' UTR (NM_006078, exon 4 of 4) -34848 NM_003753 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 421-182 chr3 32681776 32681995 + 4 NA Intergenic AluJb|SINE|Alu -3303 NM_015442 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 567-191 chr8 108965173 108965500 + 4 NA Intergenic Intergenic -121292 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 729-54 chr3 144637746 144638054 + 4 NA Intergenic L1MB8|LINE|L1 664819 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 490-285 chr8 60040731 60040911 + 4 NA Intergenic Intergenic 240579 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 564-17 chr10 59005229 59005625 + 4 NA Intergenic MIRb|SINE|MIR 5909 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 681-58 chr4 42848634 42848917 + 4 NA Intergenic L1PA16|LINE|L1 -44491 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 641-69 chr21 28282075 28282365 + 4 NA Intergenic Intergenic -53553 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 522-216 chr6 4537207 4537389 + 4 NA Intergenic L1MB7|LINE|L1 48500 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 762-33 chr2 16182991 16183224 + 4 NA Intergenic L1ME4a|LINE|L1 132680 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 688-60 chr19 52116174 52116354 + 4 NA non-coding (NR_135823, exon 5 of 5) non-coding (NR_135823, exon 5 of 5) -20499 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 562-197 chr6 163214933 163215156 + 4 NA intron (NM_001080379, intron 4 of 4) L1M5|LINE|L1 -23042 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 1034-7 chr11 81722399 81723040 + 4 NA Intergenic L1MA3|LINE|L1 168117 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 1407-3 chr21 32237523 32238171 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR 41202 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 1376-4 chr17 58145572 58146316 + 4 NA Intergenic L1MB7|LINE|L1 -9210 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 800-29 chr19 27626442 27626897 + 4 NA Intergenic ALR/Alpha|Satellite|centr -166762 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 628-110 chr5 178283582 178283887 + 4 NA intron (NM_173465, intron 5 of 28) intron (NM_173465, intron 5 of 28) -50912 NR_103510 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 1304-3 chr21 32193506 32194090 + 4 NA Intergenic Intergenic 85251 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 875-32 chr6 55590388 55590803 + 4 NA Intergenic L1PA4|LINE|L1 -11381 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 394-301 chr7 33416357 33416545 + 4 NA intron (NM_001348037, intron 18 of 20) Charlie8|DNA|hAT-Charlie 286887 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 762-59 chr6 43235942 43236147 + 4 NA Intergenic AluJr|SINE|Alu -6563 NM_199184 10591 Hs.109752 NM_006443 ENSG00000112667 DNPH1 C6orf108|RCL|dJ330M21.3 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding 758-32 chr17 64425320 64425557 + 4 NA Intergenic MER41B|LTR|ERV1 -23677 NM_001291317 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 891-35 chr6 153524350 153524666 + 4 NA Intergenic Intergenic -393226 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 801-48 chr6 40016525 40016884 + 4 NA Intergenic L1MA4|LINE|L1 -82242 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1229-3 chr2 107641869 107642543 + 4 NA Intergenic L1MB1|LINE|L1 -111906 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 616-159 chr7 45533075 45533355 + 4 NA Intergenic Intergenic -40925 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 805-10 chr13 53282620 53282949 + 4 NA Intergenic Intergenic -130884 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 718-27 chr14 92469160 92469494 + 4 NA intron (NM_153647, intron 13 of 17) AluY|SINE|Alu -44454 NM_024832 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 1360-4 chr4 125061343 125061862 + 4 NA Intergenic Intergenic -254810 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 639-104 chr6 74125985 74126304 + 4 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 56693 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 618-94 chr4 175885777 175886039 + 4 NA intron (NR_048571, intron 1 of 5) L1MEd|LINE|L1 -72794 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 1385-7 chr8 138426859 138427391 + 4 NA intron (NM_001362965, intron 1 of 19) L1ME3A|LINE|L1 70136 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 380-267 chr3 192028884 192028986 + 4 NA Intergenic L1MCa|LINE|L1 -209695 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 494-193 chr3 191936063 191936250 + 4 NA Intergenic L1MC2|LINE|L1 -302474 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 908-25 chr3 18568234 18568692 + 4 NA Intergenic Intergenic -122871 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 684-41 chr15 97535899 97536108 + 4 NA Intergenic Intergenic -14192 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 862-3 chr10 27424444 27424815 + 4 NA Intergenic MLT2C1|LTR|ERVL -10261 NM_001034842 374308 Hs.631832 NM_001034842 ENSG00000182077 PTCHD3 PTR patched domain containing 3 protein-coding 656-41 chr16 9040523 9040843 + 4 NA Intergenic AluSx1|SINE|Alu -50961 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 1178-11 chr8 117389967 117390398 + 4 NA Intergenic L1MC4|LINE|L1 -130531 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 658-72 chr20 33221880 33222104 + 4 NA intron (NM_178466, intron 1 of 6) intron (NM_178466, intron 1 of 6) 4640 NM_178466 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 442-55 chr12 39517902 39518036 + 4 NA Intergenic L1M2|LINE|L1 -74849 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 466-248 chr7 34884490 34884703 + 4 NA Intergenic Intergenic -50265 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 639-83 chr3 133179799 133180008 + 4 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 55082 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 530-266 chr8 139348157 139348342 + 4 NA Intergenic Intergenic 354874 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 555-217 chr9 90075048 90075348 + 4 NA Intergenic Intergenic -33699 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 453-210 chr5 97912903 97913091 + 4 NA intron (NR_146299, intron 2 of 2) intron (NR_146299, intron 2 of 2) 72239 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 795-9 chr1 246259334 246259656 + 4 NA intron (NM_022743, intron 5 of 11) L1PA16|LINE|L1 157917 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 957-6 chr12 34548432 34548862 + 4 NA Intergenic ALR/Alpha|Satellite|centr 526151 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 650-92 chr5 15172887 15173158 + 4 NA Intergenic Intergenic 93538 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 507-120 chr2 52196298 52196514 + 4 NA intron (NR_135237, intron 7 of 10) L1MD1|LINE|L1 -174242 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 632-68 chr21 24544876 24545102 + 4 NA intron (NR_135519, intron 2 of 2) intron (NR_135519, intron 2 of 2) 116249 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 961-6 chr2 40382342 40382679 + 4 NA intron (NM_001351483, intron 2 of 8) Tigger13a|DNA|TcMar-Tigger 47794 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 770-30 chr17 73652454 73652698 + 4 NA Intergenic Intergenic -8131 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 624-40 chr15 79130826 79131028 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -40147 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 844-4 chr1 198810942 198811285 + 4 NA intron (NR_040073, intron 2 of 2) L2c|LINE|L2 47869 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 817-2 chr1 100557366 100557730 + 4 NA Intergenic L1M1|LINE|L1 19409 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 717-28 chr14 58049938 58050156 + 4 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 102166 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 473-188 chr4 32291321 32291643 + 4 NA Intergenic Intergenic -59556 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 587-69 chr2 33716647 33716823 + 4 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) 9849 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 798-51 chr5 87937372 87937705 + 4 NA Intergenic Intergenic 275496 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 766-22 chr15 101516021 101516415 + 4 NA Intergenic L1ME1|LINE|L1 -26234 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 367-186 chr19 56502393 56502638 + 4 NA Intergenic L1MC5a|LINE|L1 -5340 NM_020813 57573 Hs.230188 NM_020813 ENSG00000196263 ZNF471 ERP1|Z1971 zinc finger protein 471 protein-coding 580-67 chr18 40145261 40145540 + 4 NA Intergenic X6B_LINE|LINE|CR1 79114 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 703-80 chr6 104190774 104191045 + 4 NA Intergenic L1PBb|LINE|L1 668637 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 536-219 chr7 83031826 83032064 + 4 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 130939 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 1101-16 chr6 40699774 40700204 + 4 NA Intergenic Intergenic -112625 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 559-125 chr3 105073285 105073451 + 4 NA Intergenic L1ME1|LINE|L1 -293345 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 379-352 chr8 117281293 117281481 + 4 NA Intergenic L2c|LINE|L2 146392 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 947-16 chr2 100316778 100317310 + 4 NA intron (NM_198461, intron 1 of 11) L1ME3|LINE|L1 5689 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 761-7 chr10 42910427 42910859 + 4 NA Intergenic L1PA3|LINE|L1 39122 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 654-51 chr18 69607826 69608149 + 4 NA intron (NM_152721, intron 3 of 7) intron (NM_152721, intron 3 of 7) 138056 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 847-22 chr16 86448382 86448754 + 4 NA Intergenic MER58A|DNA|hAT-Charlie 60292 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 589-28 chr12 129923648 129923878 + 4 NA Intergenic Intergenic -19738 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 1188-4 chr12 37927926 37928585 + 4 NA Intergenic ALR/Alpha|Satellite|centr -388519 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 897-28 chr3 100509312 100509660 + 4 NA intron (NM_018004, intron 1 of 5) L1M2b|LINE|L1 16867 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 556-66 chr14 71473071 71473369 + 4 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) -14641 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 1208-9 chr18 55875123 55875491 + 4 NA Intergenic Intergenic 44892 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 1297-4 chr14 57003011 57003389 + 4 NA Intergenic Intergenic 190042 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 468-324 chr8 132376118 132376299 + 4 NA intron (NM_004519, intron 1 of 14) Kanga11a|DNA|TcMar-Tc2 71054 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 1463 chr18 13953735 13954287 + 4 NA Intergenic HERVL40-int|LTR|ERVL -38304 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 808-62 chrX 63374714 63375071 + 4 NA Intergenic L1MDb|LINE|L1 -23560 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 577-106 chr20 56231186 56231525 + 4 NA Intergenic Intergenic -17377 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 910-16 chr18 39940072 39940384 + 4 NA Intergenic Intergenic 98519 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 573-213 chr9 94841770 94842047 + 4 NA intron (NM_032823, intron 5 of 14) AluJr|SINE|Alu 31946 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 460-274 chr7 48072116 48072267 + 4 NA Intergenic Tigger3a|DNA|TcMar-Tigger -16412 NM_001287426 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 651-72 chr2 168330958 168331189 + 4 NA Intergenic L1MA4A|LINE|L1 -83478 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 609-50 chr2 5328417 5328792 + 4 NA Intergenic Intergenic 362514 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 742-85 chrX 74452612 74452871 + 4 NA intron (NM_006517, intron 1 of 5) L3|LINE|CR1 31248 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 1087-4 chr12 128458007 128458383 + 4 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 164103 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 696-18 chr11 43789056 43789416 + 4 NA intron (NM_016142, intron 3 of 10) L2c|LINE|L2 -91595 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 764 chr1 42510868 42511223 + 4 NA intron (NM_001355227, intron 6 of 18) HUERS-P3b-int|LTR|ERV1 -21975 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 737-86 chr8 90373214 90373566 + 4 NA intron (NR_051989, intron 3 of 3) MLT1B|LTR|ERVL-MaLR 151902 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 343-149 chr14 82699039 82699213 + 4 NA intron (NR_146650, intron 5 of 5) (AAGA)n|Simple_repeat|Simple_repeat 56494 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 816-48 chr8 133826993 133827386 + 4 NA Intergenic MIRb|SINE|MIR -49837 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 777-75 chr8 144991799 144992082 + 4 NA intron (NR_023392, intron 4 of 4) L1MEg|LINE|L1 -2925 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 630-56 chr2 106844814 106844982 + 4 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 41130 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 893-28 chr3 4381608 4381997 + 4 NA intron (NM_001164674, intron 6 of 7) AluJb|SINE|Alu 78498 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 790-34 chr3 96525722 96525983 + 4 NA Intergenic L1MC3|LINE|L1 165888 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 1095-6 chr3 194533962 194534450 + 4 NA Intergenic HAL1|LINE|L1 47066 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 777-38 chr20 56074803 56075157 + 4 NA Intergenic Intergenic -69461 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 412-189 chr21 15804237 15804407 + 4 NA intron (NM_001283042, intron 6 of 24) intron (NM_001283042, intron 6 of 24) 74340 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 1000-17 chr4 111385564 111385950 + 4 NA Intergenic Intergenic -525110 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 458-96 chr16 78922747 78922974 + 4 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 677877 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 548-147 chr3 71629025 71629251 + 4 NA Intergenic Intergenic -45149 NM_001244810 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 646-112 chr6 169296555 169296813 + 4 NA Intergenic Intergenic -42570 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 774-41 chr2 62371725 62371985 + 4 NA Intergenic FLAM_C|SINE|Alu 134340 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 1550-3 chr3 7824726 7825569 + 4 NA Intergenic L1MA4A|LINE|L1 191160 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 599-95 chr4 31935457 31935682 + 4 NA Intergenic Intergenic -61810 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 684-80 chr4 32923407 32923707 + 4 NA Intergenic Intergenic 572519 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1037-18 chr8 85584211 85584783 + 4 NA Intergenic HAL1|LINE|L1 71179 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 252-56 chr10 129022868 129022962 + 4 NA Intergenic Intergenic 110082 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 960-13 chr18 10995798 10996271 + 4 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 152728 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 922-2 chr1 77479310 77479636 + 4 NA intron (NM_012093, intron 8 of 13) AluSp|SINE|Alu 196386 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 985-19 chr8 113818314 113818853 + 4 NA Intergenic L1PA16|LINE|L1 -381644 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 633-114 chr7 50225684 50225926 + 4 NA Intergenic Intergenic -78259 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 675-76 chr5 145465475 145465696 + 4 NA Intergenic MIR|SINE|MIR 369757 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 666-46 chr18 13896134 13896430 + 4 NA intron (NM_001291911, intron 1 of 1) intron (NM_001291911, intron 1 of 1) 19254 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 854-17 chr14 84396803 84397253 + 4 NA Intergenic Charlie5|DNA|hAT-Charlie -874904 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 622-127 chr7 39713711 39714018 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -19704 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 296-507 chrX 87614043 87614152 + 4 NA intron (NM_057162, intron 2 of 10) intron (NM_057162, intron 2 of 10) 96295 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 510-172 chr21 19922818 19923031 + 4 NA Intergenic MLT2B4|LTR|ERVL -23169 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 1363-4 chr7 84870287 84871015 + 4 NA Intergenic Intergenic 251280 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 564-8 chr1 227651279 227651564 + 4 NA intron (NM_001367909, intron 3 of 3) L1M3a|LINE|L1 46286 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 582-68 chr2 56761509 56761775 + 4 NA Intergenic Intergenic -575872 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1077-10 chr4 34405752 34406144 + 4 NA Intergenic Intergenic -136201 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 809-55 chr8 117574761 117575172 + 4 NA Intergenic Intergenic 54253 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 727-90 chr9 31951681 31951872 + 4 NA Intergenic L1PA16|LINE|L1 -432827 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 1215-12 chr9 32314093 32314641 + 4 NA Intergenic L1MA2|LINE|L1 -70236 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 879-20 chr4 30573716 30574160 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -146431 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1018-31 chr6 107450320 107450699 + 4 NA intron (NM_020381, intron 1 of 7) intron (NM_020381, intron 1 of 7) 9055 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 558-20 chr10 37973143 37973313 + 4 NA intron (NR_138063, intron 1 of 8) L1MA4|LINE|L1 2752 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 848-51 chr9 79695829 79696324 + 4 NA intron (NR_104239, intron 9 of 20) MER33|DNA|hAT-Charlie 122899 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 778-68 chr8 136111791 136112069 + 4 NA Intergenic Intergenic -418868 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 581-69 chr19 43838820 43839103 + 4 NA intron (NM_181845, intron 6 of 6) L1M4|LINE|L1 11640 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 399-210 chr3 78356640 78356816 + 4 NA Intergenic L2|LINE|L2 -307765 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 480-75 chr14 54936570 54936768 + 4 NA Intergenic L1M4|LINE|L1 -33843 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 610-118 chr3 137135756 137135972 + 4 NA Intergenic Intergenic 177881 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 923-30 chr9 135627229 135627631 + 4 NA intron (NM_182974, intron 3 of 4) L1MB7|LINE|L1 12110 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 506-154 chr2 123042435 123042649 + 4 NA Intergenic L1MEd|LINE|L1 30939 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 888-23 chr2 132816652 132817120 + 4 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -98671 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 1034-15 chr6 67113393 67113857 + 4 NA Intergenic Intergenic -941726 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 688-73 chr3 68379196 68379447 + 4 NA intron (NM_001252216, intron 2 of 4) L1PA13|LINE|L1 -121316 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 721-38 chr2 185503385 185503696 + 4 NA Intergenic HSMAR2|DNA|TcMar-Mariner 235179 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 510-186 chr3 90019325 90019510 + 4 NA Intergenic L1M5|LINE|L1 911796 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 864-12 chr14 71355757 71356028 + 4 NA intron (NM_001354285, intron 2 of 24) LTR67B|LTR|ERVL 35416 NM_015556 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 608-156 chr8 102677144 102677392 + 4 NA intron (NR_160672, intron 3 of 4) L2a|LINE|L2 21020 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 934-23 chr4 30432735 30433169 + 4 NA Intergenic Intergenic -287417 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 536-116 chr2 50113599 50113789 + 4 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -139491 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 811-14 chr14 34239006 34239397 + 4 NA Intergenic Intergenic 223039 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 808-2 chr1 71770208 71770451 + 4 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 66683 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 651-2 chr1 49720868 49721082 + 4 NA intron (NM_001323575, intron 2 of 12) LTR12F|LTR|ERV1 -248890 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 664-57 chr2 118382244 118382657 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger -196064 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 680-42 chr15 80552751 80553040 + 4 NA intron (NM_014862, intron 10 of 18) intron (NM_014862, intron 10 of 18) 10049 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 599-131 chr8 36550022 36550265 + 4 NA Intergenic LTR37B|LTR|ERV1 -234231 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 687-44 chr16 49647902 49648221 + 4 NA intron (NM_001271620, intron 3 of 7) MLT1D-int|LTR|ERVL-MaLR 16263 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 572-167 chr8 36442167 36442387 + 4 NA Intergenic Intergenic -342097 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 692-36 chr16 82688815 82689068 + 4 NA promoter-TSS (NR_107025) promoter-TSS (NR_107025) 10 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 1155 chr14 46084681 46085039 + 4 NA intron (NR_102702, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat 20701 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 703-103 chr9 8152844 8153039 + 4 NA Intergenic L1PA15|LINE|L1 -353163 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 1224-4 chr3 25992013 25992581 + 4 NA Intergenic LTR43|LTR|ERV1 -118602 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 880-21 chr2 79305122 79305562 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -145589 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 509-236 chr7 90373267 90373524 + 4 NA intron (NM_001042717, intron 3 of 7) L2c|LINE|L2 -22897 NR_102424 101409256 NR_102424 LOC101409256 - cell division cycle 42 pseudogene pseudo 716-9 chr10 22181273 22181697 + 4 NA Intergenic L1ME1|LINE|L1 28498 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 353-157 chr15 52712357 52712513 + 4 NA Intergenic MLT1G3|LTR|ERVL-MaLR -33801 NM_019600 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 724-88 chr6 156470801 156471060 + 4 NA Intergenic L1MA4A|LINE|L1 92180 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 1175-3 chr17 74140597 74141124 + 4 NA Intergenic AluSx|SINE|Alu -62818 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 653-128 chr8 137528803 137529155 + 4 NA Intergenic Intergenic -115391 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 638-161 chr8 128232544 128232984 + 4 NA Intergenic Intergenic 82648 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 568-94 chr2 4976658 4976933 + 4 NA Intergenic Intergenic -320573 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 911-7 chr14 68905965 68906449 + 4 NA intron (NM_001102, intron 6 of 20) L1MB3|LINE|L1 73095 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 899-19 chr3 38690831 38691320 + 4 NA Intergenic L1ME3B|LINE|L1 -41388 NM_001160160 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 821-51 chr7 16110047 16110391 + 4 NA intron (NM_001101426, intron 9 of 9) L1MA7|LINE|L1 -100267 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 932-8 chr17 63109323 63109925 + 4 NA intron (NM_025185, intron 4 of 25) MIR|SINE|MIR 143389 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 588-132 chr6 47863048 47863322 + 4 NA Intergenic Arthur1B|DNA|hAT-Tip100 76117 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 573-23 chr10 39256113 39256449 + 4 NA Intergenic ALR/Alpha|Satellite|centr 559685 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 710-97 chr8 139559523 139559791 + 4 NA Intergenic MIR|SINE|MIR 143466 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 784 chr1 14218548 14218967 + 4 NA Intergenic L1MC5|LINE|L1 201216 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 726-38 chr19 46573844 46574204 + 4 NA intron (NM_001370550, intron 1 of 2) intron (NM_001370550, intron 1 of 2) 26892 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 725-43 chr4 59653076 59653452 + 4 NA Intergenic Intergenic 639691 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 518-129 chr2 52703305 52703490 + 4 NA promoter-TSS (NR_039630) promoter-TSS (NR_039630) -782 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 783-47 chr20 32761227 32761579 + 4 NA promoter-TSS (NM_001207056) promoter-TSS (NM_001207056) -982 NM_006892 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 936-15 chr2 14678166 14678658 + 4 NA Intergenic Intergenic 45695 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 590-37 chr12 129045631 129045852 + 4 NA Intergenic Intergenic -63949 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 806-31 chr2 156607484 156607787 + 4 NA Intergenic Intergenic 171256 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 984-11 chr5 94330368 94330802 + 4 NA intron (NM_001145678, intron 20 of 20) L1MEf|LINE|L1 -218886 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 518-221 chr5 6500898 6501154 + 4 NA Intergenic Intergenic 52167 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 561-194 chr8 11384613 11384791 + 4 NA intron (NR_026814, intron 2 of 6) L1ME3|LINE|L1 16300 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 769-18 chr14 86401533 86401813 + 4 NA Intergenic Charlie2a|DNA|hAT-Charlie 466995 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 802-15 chr12 119557933 119558339 + 4 NA Intergenic MLT1O|LTR|ERVL-MaLR -35638 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 990-21 chr5 28744093 28744427 + 4 NA Intergenic Intergenic -182610 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 730-60 chr5 117836113 117836464 + 4 NA intron (NR_104997, intron 1 of 2) L2a|LINE|L2 105927 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 802-34 chr2 123891733 123892121 + 4 NA Intergenic L1MA2|LINE|L1 133247 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 935-7 chr11 44299793 44300143 + 4 NA intron (NM_021926, intron 1 of 3) MIR|SINE|MIR 10171 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 1082-2 chr10 52457292 52457722 + 4 NA intron (NR_120641, intron 2 of 3) intron (NR_120641, intron 2 of 3) -2235 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 1149-9 chr7 43451212 43451765 + 4 NA intron (NM_015052, intron 12 of 29) intron (NM_015052, intron 12 of 29) 71054 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 1501-4 chr6 162944581 162945286 + 4 NA intron (NM_001080379, intron 2 of 4) L1MA4|LINE|L1 109228 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 430-143 chr2 60912156 60912310 + 4 NA intron (NM_002908, intron 4 of 10) MER6A|DNA|TcMar-Tigger 30659 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 663-17 chr11 34422846 34423252 + 4 NA Intergenic Intergenic -15885 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 909-14 chr2 102552973 102553455 + 4 NA Intergenic Intergenic -66339 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 765-39 chr3 28353863 28354149 + 4 NA intron (NM_001324170, intron 1 of 6) L2a|LINE|L2 4857 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 728-101 chr8 119939151 119939442 + 4 NA intron (NM_022783, intron 3 of 8) intron (NM_022783, intron 3 of 8) 65574 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 512-217 chr5 64014950 64015090 + 4 NA Intergenic L2a|LINE|L2 -52728 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 345-78 chr10 122262066 122262161 + 4 NA Intergenic L1MB2|LINE|L1 -9183 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 570-186 chr7 104844571 104844729 + 4 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -40558 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 1053-14 chr21 44719885 44720319 + 4 NA Intergenic Intergenic -8530 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|ECTD14|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding 926-19 chr3 103717110 103717485 + 4 NA Intergenic L1MA9|LINE|L1 -193181 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 786-22 chr14 94528633 94528871 + 4 NA Intergenic L1MA10|LINE|L1 -10908 NM_173850 145264 Hs.99476 NM_173850 ENSG00000165953 SERPINA12 OL-64 serpin family A member 12 protein-coding 621-39 chr15 26931543 26931761 + 4 NA intron (NM_001165037, intron 7 of 10) intron (NM_001165037, intron 7 of 10) -39529 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 1024-18 chr21 30393334 30393820 + 4 NA Intergenic Intergenic -2454 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 803-33 chr4 23746374 23746773 + 4 NA Intergenic L1MB7|LINE|L1 134719 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 731-70 chr8 30300486 30300763 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR -83877 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 563-48 chr14 44523164 44523373 + 4 NA intron (NR_135257, intron 2 of 2) intron (NR_135257, intron 2 of 2) 15859 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 497-20 chr10 58449098 58449287 + 4 NA Intergenic L1MEb|LINE|L1 -63680 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 625-12 chr10 65029880 65030173 + 4 NA Intergenic MER44A|DNA|TcMar-Tigger -105508 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 900-33 chr5 26783993 26784487 + 4 NA Intergenic MIRc|SINE|MIR 254346 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 867-32 chr4 58084291 58084693 + 4 NA Intergenic Intergenic 451836 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 711-21 chr14 70491897 70492109 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -8247 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 728-52 chr2 148329678 148329945 + 4 NA intron (NM_018328, intron 4 of 14) intron (NM_018328, intron 4 of 14) -308207 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 465-293 chr8 106041221 106041361 + 4 NA intron (NR_125797, intron 1 of 4) L1ME1|LINE|L1 19212 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 725-41 chr3 100177475 100177683 + 4 NA intron (NM_001167924, intron 9 of 9) intron (NM_001167924, intron 9 of 9) -8245 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 344-497 chr8 118810201 118810335 + 4 NA Intergenic Intergenic 141617 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 940-38 chr8 62103248 62103703 + 4 NA Intergenic L1PA16|LINE|L1 -145379 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 1469 chr7 3500812 3501616 + 4 NA intron (NM_152744, intron 1 of 44) HAL1|LINE|L1 199962 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1108-17 chr7 146513502 146513984 + 4 NA Intergenic L1M1|LINE|L1 -260528 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 697-18 chr12 34662599 34662848 + 4 NA Intergenic ALR/Alpha|Satellite|centr 640227 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1208-10 chr19 12247917 12248476 + 4 NA Intergenic Intergenic 46416 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 716-25 chr14 79700238 79700578 + 4 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) 421028 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 609-26 chr13 45255393 45255589 + 4 NA intron (NM_004128, intron 6 of 7) intron (NM_004128, intron 6 of 7) -54446 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 799-34 chr22 34142122 34142409 + 4 NA Intergenic L1PA13|LINE|L1 -219377 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 584-132 chr5 46170229 46170500 + 4 NA Intergenic ALR/Alpha|Satellite|centr -473984 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 774-20 chr12 119619733 119620200 + 4 NA intron (NM_001136534, intron 1 of 2) L1M|LINE|L1 26192 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 411-304 chr9 22847763 22847925 + 4 NA Intergenic Intergenic 201644 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 751-40 chr20 59313633 59313999 + 4 NA intron (NM_207032, intron 2 of 4) intron (NM_207032, intron 2 of 4) 13205 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 370-59 chr10 84794591 84794750 + 4 NA Intergenic L1MB7|LINE|L1 369501 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 605-26 chr14 54035445 54035677 + 4 NA Intergenic L1MCc|LINE|L1 -78670 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 529-26 chr11 13845694 13845926 + 4 NA intron (NR_149109, intron 3 of 3) intron (NR_149109, intron 3 of 3) 24806 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 744-59 chr5 148713430 148713741 + 4 NA Intergenic MIRb|SINE|MIR -59058 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 628-103 chr5 41036512 41036695 + 4 NA intron (NM_173489, intron 21 of 41) L1PA16|LINE|L1 34739 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 979-12 chr4 48558347 48558673 + 4 NA intron (NM_015030, intron 33 of 63) L1MB2|LINE|L1 68258 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 470-96 chr17 60807192 60807481 + 4 NA intron (NM_001330413, intron 6 of 25) L1M5|LINE|L1 129485 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 1227-4 chr8 120788143 120788715 + 4 NA intron (NM_021021, intron 1 of 6) L1PB3|LINE|L1 23617 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 839-47 chr8 46322979 46323328 + 4 NA Intergenic ALR/Alpha|Satellite|centr 294490 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 616-141 chr6 47683227 47683410 + 4 NA 3' UTR (NM_001368115, exon 6 of 6) 3' UTR (NM_001368115, exon 6 of 6) -15262 NM_153838 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 472-338 chr8 139782884 139783114 + 4 NA intron (NM_001160372, intron 21 of 22) L1ME1|LINE|L1 -79876 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 486-183 chr21 24019267 24019490 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 301999 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 894-30 chr4 72962834 72963229 + 4 NA Intergenic L1PA15-16|LINE|L1 106685 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 614-131 chr8 68603303 68603591 + 4 NA intron (NR_146186, intron 7 of 12) L1ME2|LINE|L1 -271956 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 574-91 chr2 239887606 239887781 + 4 NA Intergenic L1MB7|LINE|L1 55401 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 947-20 chr22 34149122 34149666 + 4 NA Intergenic L1MB8|LINE|L1 -226506 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 854-7 chr1 194324183 194324644 + 4 NA Intergenic L1MCa|LINE|L1 1019668 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 1429-3 chr15 93271469 93272174 + 4 NA Intergenic Intergenic 65755 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 506-302 chr9 26075843 26076005 + 4 NA intron (NM_001004352, intron 1 of 6) L1PA8A|LINE|L1 9249 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 424-126 chr2 24762456 24762635 + 4 NA intron (NM_001362950, intron 21 of 23) L1ME3A|LINE|L1 -30570 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 747-60 chr7 6282083 6282446 + 4 NA Intergenic L1MD2|LINE|L1 -9640 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 553-129 chr2 142699402 142699597 + 4 NA Intergenic L1PBa|LINE|L1 -178165 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 1161-9 chr7 12291705 12292273 + 4 NA Intergenic MER52-int|LTR|ERV1 80695 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 459-138 chr2 78202136 78202363 + 4 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 88482 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 634-131 chr6 27971866 27972045 + 4 NA Intergenic L1MA6|LINE|L1 14714 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 640-20 chr10 130635066 130635270 + 4 NA Intergenic Intergenic 327500 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 672-118 chr9 27707822 27708063 + 4 NA Intergenic LTR45C|LTR|ERV1 -134076 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1580 chr1 179486191 179486892 + 4 NA intron (NR_073544, intron 17 of 25) L1PA13|LINE|L1 89407 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 1015-10 chr2 226489872 226490483 + 4 NA Intergenic Intergenic 168616 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 582-35 chr14 45343421 45343664 + 4 NA Intergenic Intergenic -90340 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 862-20 chr20 59110591 59110922 + 4 NA Intergenic Intergenic -67910 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 628-57 chr18 1672257 1672441 + 4 NA Intergenic L1MEd|LINE|L1 -312720 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 498-250 chr7 62602247 62602423 + 4 NA Intergenic ALR/Alpha|Satellite|centr 701721 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 618-106 chr6 20006003 20006308 + 4 NA Intergenic L1M5|LINE|L1 168785 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 795-32 chr2 123611714 123612027 + 4 NA Intergenic Intergenic 413304 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1484-4 chr8 135320731 135321486 + 4 NA Intergenic Intergenic 86977 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 676 chr1 50893318 50893557 + 4 NA intron (NM_007051, intron 1 of 18) L1M1|LINE|L1 66830 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 563-186 chr8 126028712 126028939 + 4 NA Intergenic L1MB8|LINE|L1 -77628 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1213-10 chr5_GL000208v1_random 491 1090 + 4 NA NA ALR/Alpha|Satellite|centr NA NA 697-70 chr8 35268532 35268840 + 4 NA intron (NM_080872, intron 1 of 16) MIR|SINE|MIR 33211 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 528-13 chr1 88486348 88486564 + 4 NA Intergenic Intergenic -197688 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 781-49 chr5 11500249 11500457 + 4 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 88564 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 796-36 chr4 57816587 57816793 + 4 NA Intergenic L1MC2|LINE|L1 390818 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 381-234 chr22 28252533 28252733 + 4 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -207236 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 626-71 chr2 123935685 123935991 + 4 NA Intergenic L1PB4|LINE|L1 89336 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1246-6 chr3 131250551 131250964 + 4 NA intron (NM_001353036, intron 14 of 14) HAL1|LINE|L1 -111088 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 621-82 chr4 56058763 56059052 + 4 NA Intergenic Intergenic 109962 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 794-12 chr11 50738094 50738424 + 4 NA Intergenic ALR/Alpha|Satellite|centr 329112 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 800-43 chr3 135873398 135873947 + 4 NA Intergenic L1MB1|LINE|L1 -92056 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 840-21 chr17 57796391 57796790 + 4 NA Intergenic L1ME3A|LINE|L1 -51291 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 582-49 chr16 78928604 78929017 + 4 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 671927 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 826-5 chr1 232161473 232161837 + 4 NA Intergenic Intergenic 235821 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 753-4 chr1 235297145 235297470 + 4 NA intron (NR_135074, intron 2 of 24) L1MC5a|LINE|L1 30180 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 819-33 chr8 84684671 84685045 + 4 NA intron (NM_001354308, intron 3 of 9) MLT1A|LTR|ERVL-MaLR -21069 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 401-175 chr2 184586949 184587145 + 4 NA Intergenic Intergenic -11482 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 647-13 chr10 115106367 115106558 + 4 NA intron (NR_074088, intron 2 of 9) THE1A-int|LTR|ERVL-MaLR 13097 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 673-108 chr7 56525685 56525975 + 4 NA Intergenic Intergenic 12300 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 823-27 chr5 169849209 169849592 + 4 NA intron (NR_156756, intron 27 of 52) MIR|SINE|MIR 131095 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 1294 chr17 71842638 71843400 + 4 NA Intergenic MER57E1|LTR|ERV1 182960 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 1289-3 chr6 124671428 124671993 + 4 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -290835 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 803-62 chr8 139721624 139721930 + 4 NA Intergenic L1ME3D|LINE|L1 -18654 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1520-3 chr4 162430 163045 + 4 NA non-coding (NR_110529, exon 2 of 2) non-coding (NR_110529, exon 2 of 2) 34616 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 709-2 chr1 69784318 69784555 + 4 NA intron (NM_001370785, intron 3 of 26) intron (NM_001370785, intron 3 of 26) -134886 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 550-6 chr1 63787094 63787255 + 4 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 13157 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 670-69 chr2 211215167 211215445 + 4 NA Intergenic Intergenic 597735 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 648-126 chr6 71813059 71813263 + 4 NA Intergenic L1M2|LINE|L1 -73542 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 797-37 chr4 92414422 92414900 + 4 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 110262 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 510-113 chr18 9974903 9975060 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 60965 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 622-52 chr2 34143859 34144119 + 4 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 76763 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 701-29 chr16 67376979 67377188 + 4 NA intron (NM_018296, intron 11 of 13) intron (NM_018296, intron 11 of 13) 16415 NM_016140 51673 Hs.534458 NM_015964 ENSG00000159713 TPPP3 CGI-38|TPPP/p20|p20|p25gamma tubulin polymerization promoting protein family member 3 protein-coding 746-7 chr1 179476867 179477062 + 4 NA intron (NR_073544, intron 16 of 25) L1MB7|LINE|L1 98984 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 485-287 chr8 90963596 90963836 + 4 NA intron (NM_001363275, intron 4 of 5) L1MB5|LINE|L1 21361 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 438-162 chr3 1048635 1048806 + 4 NA Intergenic HAL1|LINE|L1 -44304 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 1255-3 chr14 76659363 76660090 + 4 NA Intergenic Intergenic -101742 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 590-19 chr10 82225629 82225975 + 4 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 7118 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 658-38 chr13 86033113 86033385 + 4 NA Intergenic L2a|LINE|L2 -233830 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 676-60 chr2 99126372 99126593 + 4 NA intron (NM_001349014, intron 1 of 16) L1MDa|LINE|L1 14698 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 580-50 chr14 89740379 89740529 + 4 NA Intergenic Intergenic -121289 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 520-20 chr1 192650714 192650916 + 4 NA intron (NM_144766, intron 4 of 5) intron (NM_144766, intron 4 of 5) 14668 NM_144766 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 548-186 chr5 106573420 106573651 + 4 NA Intergenic Intergenic 437479 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 677 chr1 5075792 5076033 + 4 NA Intergenic Intergenic 421303 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 852-35 chr3 118152175 118152550 + 4 NA Intergenic L1M2b|LINE|L1 -461437 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 648 chr1 29853771 29853965 + 4 NA Intergenic MIRb|SINE|MIR 183744 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 839-23 chr2 165617004 165617360 + 4 NA intron (NM_024969, intron 2 of 4) L1MA5|LINE|L1 44846 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 763-65 chr8 112736768 112737204 + 4 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 93493 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 964-11 chr18 4889607 4890031 + 4 NA Intergenic Intergenic -191363 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 866-15 chr12 133114561 133114984 + 4 NA Intergenic Intergenic 15701 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 742-29 chr15 54826604 54826899 + 4 NA Intergenic L1MA6|LINE|L1 -229996 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 587-172 chr8 132210677 132210984 + 4 NA intron (NM_004519, intron 1 of 14) MIR|SINE|MIR -105565 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 487-191 chr3 112008754 112008945 + 4 NA intron (NM_001008272, intron 3 of 4) MSTB|LTR|ERVL-MaLR 9689 NM_001008273 29114 Hs.169330 NM_013259 ENSG00000144834 TAGLN3 NP22|NP24|NP25 transgelin 3 protein-coding 436-310 chr8 111784169 111784335 + 4 NA Intergenic L1ME4b|LINE|L1 407613 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 819-22 chr3 177900050 177900436 + 4 NA Intergenic L1M1|LINE|L1 83378 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 846-2 chr1 169062716 169063112 + 4 NA intron (NR_104091, intron 1 of 4) L1ME4a|LINE|L1 24091 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 672-3 chr1 189990618 189990922 + 4 NA Intergenic Intergenic 485240 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 604-170 chr8 131631029 131631334 + 4 NA Intergenic L2c|LINE|L2 -272912 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 539-166 chr5 44837034 44837297 + 4 NA Intergenic Intergenic 28218 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 945-6 chr14 27925160 27925593 + 4 NA Intergenic L1MC5a|LINE|L1 -252155 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 793-24 chr19 36716318 36716678 + 4 NA intron (NM_152603, intron 4 of 4) intron (NM_152603, intron 4 of 4) 12817 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 220-242 chr3 168890437 168890536 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -11459 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 783-67 chr6 56097268 56097611 + 4 NA intron (NM_030820, intron 17 of 29) L2a|LINE|L2 -5777 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 680-85 chr4 29738962 29739221 + 4 NA Intergenic Intergenic 524799 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 1070-15 chr6 79284023 79284449 + 4 NA Intergenic MIR|SINE|MIR 29148 NR_130915 80078 NR_130915 ENSG00000286042 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 931-8 chr17 55137546 55138006 + 4 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -127184 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 466-261 chr8 35848421 35848570 + 4 NA Intergenic L1MA8|LINE|L1 -138175 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 857-26 chr2 31553043 31553545 + 4 NA intron (NM_000348, intron 1 of 4) L1M3c|LINE|L1 27644 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 1452 chr1 179720429 179721315 + 4 NA Intergenic L1MB7|LINE|L1 -6904 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 728-26 chr13 80673523 80673829 + 4 NA Intergenic L1MA1|LINE|L1 -332550 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 1164-11 chr6 146647936 146648402 + 4 NA intron (NM_024694, intron 3 of 35) LTR38-int|LTR|ERV1 49197 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 601-75 chr2 49117257 49117481 + 4 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 37146 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 1228-6 chr4 96741188 96741983 + 4 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 430882 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 692-100 chr8 92250775 92251080 + 4 NA Intergenic Intergenic -147542 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 748-41 chr18 1257813 1258172 + 4 NA Intergenic L1MA5A|LINE|L1 101637 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 556-43 chr11 128910115 128910316 + 4 NA intron (NM_001354169, intron 2 of 3) intron (NM_001354169, intron 2 of 3) -3984 NR_045767 219833 Hs.689860 NM_145013 ENSG00000174370 C11orf45 - chromosome 11 open reading frame 45 protein-coding 973-9 chr16 86355504 86355972 + 4 NA Intergenic L2c|LINE|L2 -10059 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 465-300 chr8 126934560 126934813 + 4 NA Intergenic Intergenic -78468 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 1018-18 chr2 129858707 129859060 + 4 NA Intergenic MIR|SINE|MIR 18608 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 816-33 chr4 136519811 136520300 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -606375 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 318-127 chr12 7179711 7179872 + 4 NA Intergenic MSTD|LTR|ERVL-MaLR -8894 NM_001351124 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 586-102 chr3 145160270 145160521 + 4 NA Intergenic Intergenic 908790 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 552-49 chr12 127726216 127726364 + 4 NA Intergenic Intergenic -70702 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 817 chr1 43818458 43819022 + 4 NA intron (NM_001270460, intron 4 of 10) L1MEd|LINE|L1 -19882 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 618-38 chr15 87103020 87103199 + 4 NA Intergenic L1MCa|LINE|L1 -114683 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 631-51 chr17 65645702 65645981 + 4 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -84193 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 936-28 chr5 151839122 151839642 + 4 NA intron (NM_000171, intron 7 of 8) L1MB7|LINE|L1 -67206 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 1023-11 chr2 98995568 98995920 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -59519 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 952-9 chr14 55315373 55315875 + 4 NA intron (NM_152231, intron 1 of 1) HAL1|LINE|L1 43470 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 392-247 chr5 33335297 33335465 + 4 NA Intergenic Intergenic -105315 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 666-18 chr11 114330781 114331097 + 4 NA Intergenic Intergenic 35126 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 932-36 chr8 133717333 133717788 + 4 NA Intergenic Intergenic -33494 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 515-241 chr6 137134594 137134836 + 4 NA Intergenic L1MA9|LINE|L1 38929 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 820-29 chr2 83058765 83059033 + 4 NA Intergenic LOR1a|LTR|ERV1 202096 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 801-51 chr6 74001685 74002083 + 4 NA Intergenic Intergenic -67567 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 1173-8 chr21 14502546 14503153 + 4 NA intron (NM_022136, intron 5 of 7) intron (NM_022136, intron 5 of 7) 43466 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 612-4 chr1 147509139 147509394 + 4 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 8609 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 496-76 chr14 36124613 36124861 + 4 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 51914 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 702-58 chr21 22934147 22934485 + 4 NA Intergenic L1PA17|LINE|L1 -144968 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 816-36 chr5 25037749 25038006 + 4 NA Intergenic Intergenic 152779 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 1138-3 chr10 49060291 49060814 + 4 NA intron (NM_001031746, intron 5 of 7) L1ME1|LINE|L1 54970 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 960-37 chr7 28285470 28285925 + 4 NA Intergenic Intergenic -13624 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 824-18 chr19 44310150 44310574 + 4 NA Intergenic MER77B|LTR|ERVL -5337 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 610-173 chr8 121097173 121097330 + 4 NA Intergenic MLT2F|LTR|ERVL -285205 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 963-21 chr2 40349194 40349659 + 4 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 80878 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 602-121 chr6 162451541 162451737 + 4 NA intron (NM_004562, intron 1 of 11) L1MEf|LINE|L1 -275493 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 492-287 chrX 37695497 37695774 + 4 NA intron (NM_021083, intron 2 of 2) intron (NM_021083, intron 2 of 2) 9844 NM_021083 7504 Hs.78919 NM_021083 ENSG00000047597 XK KX|NA|NAC|X1k|XKR1 X-linked Kx blood group protein-coding 847-46 chr8 36072733 36073234 + 4 NA Intergenic Intergenic -362663 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 467-88 chr14 88101486 88101680 + 4 NA Intergenic L1MEc|LINE|L1 -75271 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 768-28 chr2 68561931 68562151 + 4 NA intron (NM_173545, intron 8 of 9) L1MA7|LINE|L1 -81547 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 1274-2 chr12 70186236 70186613 + 4 NA Intergenic Tigger19a|DNA|TcMar-Tigger -56606 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 472-88 chr14 65506510 65506666 + 4 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 35486 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 789-13 chr12 34504169 34504487 + 4 NA Intergenic ALR/Alpha|Satellite|centr 481832 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 749-3 chr1 68755178 68755429 + 4 NA Intergenic L1M5|LINE|L1 -258221 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 556-100 chr2 67701962 67702116 + 4 NA Intergenic Intergenic 123523 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 390-43 chr10 86121992 86122198 + 4 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 142693 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 783-62 chr5 115778041 115778635 + 4 NA Intergenic Intergenic 38319 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 494-304 chr8 140869792 140869935 + 4 NA intron (NM_001352737, intron 3 of 32) L1M4|LINE|L1 131141 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 773-27 chr4 1123038 1123395 + 4 NA promoter-TSS (NR_033768) promoter-TSS (NR_033768) -52 NR_033768 100379220 Hs.635208 NR_033768 ENSG00000215367 TMED11P p24a1|p24alpha1 transmembrane p24 trafficking protein 11, pseudogene pseudo 675-49 chr20 39618064 39618373 + 4 NA Intergenic MER33|DNA|hAT-Charlie -386243 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 621-114 chr7 10778896 10779150 + 4 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 921 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 732-63 chr3 98166923 98167235 + 4 NA Intergenic Intergenic -1621 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 526-264 chr9 105570857 105571025 + 4 NA intron (NM_001351502, intron 2 of 13) L2c|LINE|L2 12810 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 493-133 chr2 17410454 17410654 + 4 NA Intergenic Intergenic 107886 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 774-93 chr9 37311002 37311276 + 4 NA intron (NR_110317, intron 4 of 7) intron (NR_110317, intron 4 of 7) -111557 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 584-156 chr6 137514265 137514524 + 4 NA Intergenic (ATATA)n|Simple_repeat|Simple_repeat -20000 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 550-189 chr5 153907087 153907301 + 4 NA Intergenic MIRb|SINE|MIR -8207 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 446-226 chr4 180120886 180121056 + 4 NA Intergenic Intergenic 1038178 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 892-31 chr4 71117470 71117824 + 4 NA Intergenic Intergenic -69612 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 551-57 chr14 83790715 83790935 + 4 NA Intergenic Intergenic 1148193 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 504-187 chr4 66992903 66993090 + 4 NA Intergenic Intergenic 429004 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 607-51 chr16 64689551 64689782 + 4 NA Intergenic Intergenic 432397 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 699-2 chr1 43486564 43486806 + 4 NA Intergenic L1MB7|LINE|L1 -32696 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 641-54 chr18 62191518 62191700 + 4 NA intron (NR_144409, intron 1 of 31) L1PA10|LINE|L1 4354 NR_144408 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 1039-2 chr10 5468811 5469333 + 4 NA Intergenic Intergenic 22463 NM_005863 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 473-241 chr6 73155716 73156007 + 4 NA intron (NM_001160132, intron 10 of 13) intron (NM_001160132, intron 10 of 13) -12347 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 404-165 chr2 76056759 76056945 + 4 NA Intergenic Intergenic -345937 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 821-45 chr5 8281653 8282109 + 4 NA Intergenic L1PB2|LINE|L1 175683 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 1204-10 chr8 43743765 43744298 + 4 NA Intergenic ALR/Alpha|Satellite|centr 451589 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 532-203 chr5 64862178 64862385 + 4 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 93351 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 298-138 chr15 38656382 38656471 + 4 NA Intergenic MIR3|SINE|MIR -40172 NR_160786 1219-7 chr6 64667478 64668217 + 4 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -633571 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 865-33 chr3 154927111 154927394 + 4 NA Intergenic MIR|SINE|MIR -96872 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 694-35 chr13 103757721 103758009 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger 332665 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 673-37 chr16 12499864 12500171 + 4 NA intron (NM_032167, intron 19 of 20) AluJo|SINE|Alu -220304 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 1126-12 chr7 42814611 42815157 + 4 NA Intergenic L1M1|LINE|L1 96959 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 605-137 chrX 75915356 75915509 + 4 NA Intergenic L1MB8|LINE|L1 -130178 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 1087-6 chr17 77732460 77733011 + 4 NA Intergenic L1MEc|LINE|L1 -4176 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 696-59 chr2 106208836 106209115 + 4 NA Intergenic Intergenic -14636 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 743-17 chr11 98520810 98521115 + 4 NA Intergenic Intergenic -499987 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 741-25 chr18 67354725 67354954 + 4 NA Intergenic Intergenic -161707 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 928-27 chr6 19915323 19915695 + 4 NA Intergenic L1PA16|LINE|L1 78139 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 311-148 chr14 78330817 78330909 + 4 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -72856 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1186-19 chr7 83939195 83939822 + 4 NA Intergenic MamRep605|LTR?|LTR? 255281 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 418-301 chr9 8645285 8645434 + 4 NA intron (NM_130392, intron 1 of 30) intron (NM_130392, intron 1 of 30) 88587 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 634-27 chr11 26372368 26372606 + 4 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 40357 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 847-47 chr8 101897465 101897768 + 4 NA intron (NM_001040624, intron 4 of 7) L1MD2|LINE|L1 -86816 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 799-54 chr8 117218954 117219305 + 4 NA Intergenic L1MEd|LINE|L1 84134 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 991-8 chr12 34653325 34653865 + 4 NA Intergenic ALR/Alpha|Satellite|centr 631099 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 600-44 chr16 72852950 72853165 + 4 NA intron (NM_001164766, intron 3 of 8) MIR3|SINE|MIR -188087 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 854-24 chr2 125300101 125300432 + 4 NA Intergenic L1MB3|LINE|L1 817719 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 550-92 chr18 5796962 5797262 + 4 NA Intergenic Intergenic -43583 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 782-48 chr4 66109667 66110114 + 4 NA Intergenic L1PA16|LINE|L1 -166934 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 550-54 chr12 30741575 30741846 + 4 NA intron (NM_001002259, intron 2 of 17) L1M5|LINE|L1 12804 NM_001319842 65981 Hs.234355 NM_023925 ENSG00000110888 CAPRIN2 C1QDC1|EEG-1|EEG1|RNG140 caprin family member 2 protein-coding 916-6 chr13 99065288 99065709 + 4 NA intron (NM_015296, intron 1 of 55) intron (NM_015296, intron 1 of 55) 21196 NM_001318849 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 1008-17 chr5 101176734 101177197 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -273683 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 794-19 chr16 63335688 63336034 + 4 NA Intergenic Intergenic -1299423 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 656-106 chr6 41214164 41214384 + 4 NA intron (NR_027256, intron 3 of 4) L1MEh|LINE|L1 3673 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 534-22 chr10 4729484 4729645 + 4 NA Intergenic Intergenic -51494 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 871-17 chr20 31180501 31180805 + 4 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -77011 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 687-86 chr4 97520183 97520520 + 4 NA Intergenic Intergenic 153425 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 1444-3 chr17 55595393 55595913 + 4 NA Intergenic L1MB2|LINE|L1 127211 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 1068-8 chr14 68619539 68619908 + 4 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 9064 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 836-7 chr1 227581194 227581536 + 4 NA intron (NM_001367909, intron 1 of 3) L1ME3A|LINE|L1 17809 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 636-32 chr12 115283627 115283890 + 4 NA Intergenic Intergenic -599583 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 853-27 chr4 137629433 137629857 + 4 NA Intergenic Intergenic 83914 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 680-116 chr8 114476260 114476464 + 4 NA Intergenic L2c|LINE|L2 -1039423 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 496-113 chr17 70886697 70886931 + 4 NA Intergenic Intergenic 315365 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 863-9 chr12 14244052 14244451 + 4 NA Intergenic MER63A|DNA|hAT-Blackjack -121381 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 375-428 chr8 137374074 137374316 + 4 NA Intergenic Intergenic 39393 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 585-64 chr19 9757729 9757951 + 4 NA exon (NM_001077624, exon 6 of 6) exon (NM_001077624, exon 6 of 6) 10898 NM_001353799 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 684-13 chr10 44548609 44548915 + 4 NA Intergenic L1MD1|LINE|L1 -163665 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 718-64 chr4 73811837 73812155 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR -24682 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 844-16 chr12 59258326 59258865 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -337434 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 734-19 chr12 105700023 105700309 + 4 NA Intergenic L1M5|LINE|L1 -4037 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 734-46 chr3 28434223 28434465 + 4 NA intron (NM_001040432, intron 3 of 9) intron (NM_001040432, intron 3 of 9) 85195 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 560-164 chr7 14175232 14175455 + 4 NA TTS (NM_145695) TTS (NM_145695) -183918 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 678-9 chr10 51288478 51288662 + 4 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -11003 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 461-8 chr1 98528482 98528658 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -133151 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 506-24 chr1 198826173 198826365 + 4 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) 32713 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 482-176 chr4 14593702 14593888 + 4 NA intron (NR_126435, intron 4 of 6) intron (NR_126435, intron 4 of 6) 294374 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 450-228 chr4 103697755 103697973 + 4 NA intron (NM_001059, intron 1 of 4) intron (NM_001059, intron 1 of 4) 22121 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 361-51 chr10 84373642 84373818 + 4 NA exon (NM_001284240, exon 3 of 10) exon (NM_001284240, exon 3 of 10) 45141 NM_001351290 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 883-34 chr5 80322875 80323339 + 4 NA Intergenic L1MDa|LINE|L1 3105 NM_032567 84654 Hs.519403 NM_032567 ENSG00000164299 SPZ1 CILD38|NYD-TSP1|PPP1R148 spermatogenic leucine zipper 1 protein-coding 463-94 chr14 86692669 86692796 + 4 NA Intergenic Intergenic -213046 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 605-2 chr1 56031964 56032227 + 4 NA Intergenic MER4B-int|LTR|ERV1 87008 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 614-21 chr11 134769179 134769423 + 4 NA Intergenic L1MA4A|LINE|L1 33356 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 919-3 chr10 16000534 16000888 + 4 NA Intergenic Intergenic -140178 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 712-68 chr5 9794205 9794453 + 4 NA intron (NR_027112, intron 4 of 12) MamRep1151|LTR?|LTR? -60048 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 674-84 chr5 177185782 177186074 + 4 NA intron (NM_172349, intron 3 of 23) (AT)n|Simple_repeat|Simple_repeat 51699 NM_001365684 64324 Hs.106861 NM_022455 ENSG00000165671 NSD1 ARA267|KMT3B|SOTOS|SOTOS1|STO nuclear receptor binding SET domain protein 1 protein-coding 1043-5 chr19 44478880 44479293 + 4 NA intron (NM_001288761, intron 3 of 3) intron (NM_001288761, intron 3 of 3) 21436 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 686-9 chr10 39212944 39213171 + 4 NA Intergenic ALR/Alpha|Satellite|centr 516461 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 581-95 chr3 3589767 3590070 + 4 NA Intergenic MIR3|SINE|MIR -209513 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 520-176 chr22 25946522 25946688 + 4 NA intron (NM_001318245, intron 35 of 43) intron (NM_001318245, intron 35 of 43) 204417 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 1193-2 chr11 115855156 115855833 + 4 NA Intergenic L1ME3|LINE|L1 -95294 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 800-24 chr15 85978744 85979043 + 4 NA Intergenic Intergenic -100727 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 363-376 chr5 156217785 156217949 + 4 NA Intergenic Intergenic -108890 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 1150-9 chr8 141955446 141955979 + 4 NA Intergenic L1MD3|LINE|L1 -169399 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 707-65 chr3 6305238 6305527 + 4 NA Intergenic L1PA16|LINE|L1 500067 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 564-137 chr4 40133753 40133944 + 4 NA intron (NM_001318359, intron 14 of 18) AluJb|SINE|Alu -57232 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 401-159 chr2 63210003 63210279 + 4 NA intron (NR_148705, intron 13 of 16) (AT)n|Simple_repeat|Simple_repeat -90599 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 493-281 chr7 86065625 86065842 + 4 NA Intergenic Intergenic -578176 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 1028-16 chr7 118510403 118510895 + 4 NA Intergenic Intergenic 285945 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 1173-5 chr18 273802 274383 + 4 NA Intergenic Intergenic -6045 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 547-128 chr21 23091159 23091405 + 4 NA Intergenic Intergenic 11998 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 833-43 chrX 79561405 79561838 + 4 NA Intergenic Intergenic -194069 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 580-109 chr3 26189204 26189470 + 4 NA Intergenic Intergenic -315642 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 636-87 chr21 30114090 30114348 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 52586 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 1161-8 chr5 46249044 46249514 + 4 NA Intergenic ALR/Alpha|Satellite|centr -552899 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1030-19 chr5 28350631 28351010 + 4 NA Intergenic L1M2|LINE|L1 -63155 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 1054-3 chr14 63814240 63814713 + 4 NA Intergenic Intergenic -38489 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 676-81 chr3 46287482 46287687 + 4 NA Intergenic AluJb|SINE|Alu 45124 NM_001164680 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 730-20 chr17 52677943 52678290 + 4 NA Intergenic L1M2c|LINE|L1 -184005 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 890-29 chr5 45142957 45143306 + 4 NA Intergenic L1PA15|LINE|L1 334184 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 771-17 chr12 22611607 22611929 + 4 NA intron (NR_135031, intron 1 of 1) intron (NR_135031, intron 1 of 1) 13278 NR_135031 105369691 Hs.556287 NR_135030 LOC105369691 - uncharacterized LOC105369691 ncRNA 697-57 chr4 79342367 79342643 + 4 NA Intergenic L1MA4A|LINE|L1 -16444 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 502-189 chr4 85512 85669 + 4 NA intron (NM_001286054, intron 4 of 4) L1MB2|LINE|L1 32269 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 426-147 chr2 156228639 156228793 + 4 NA intron (NR_110250, intron 1 of 3) L1MB7|LINE|L1 26215 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 557-198 chr8 88453140 88453343 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -125758 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 319-463 chr6 83048782 83048913 + 4 NA intron (NM_001350603, intron 2 of 8) intron (NM_001350603, intron 2 of 8) 16994 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 655-104 chr6 26639039 26639286 + 4 NA intron (NM_001242798, intron 2 of 2) MIR|SINE|MIR 20584 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 694-99 chr4 172646774 172646974 + 4 NA intron (NR_125894, intron 2 of 2) intron (NR_125894, intron 2 of 2) 42043 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 476-174 chr3 14739408 14739598 + 4 NA intron (NM_001184957, intron 12 of 16) Tigger1|DNA|TcMar-Tigger 64362 NM_032137 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 1104-3 chr2 31826243 31826750 + 4 NA Intergenic L1M1|LINE|L1 -22516 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 973-15 chr20 11240986 11241437 + 4 NA Intergenic Intergenic 32172 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 362-7 chr1 45697158 45697286 + 4 NA intron (NM_001145349, intron 9 of 9) intron (NM_001145349, intron 9 of 9) 9041 NM_016486 51249 Hs.699548 NM_016486 ENSG00000159596 TMEM69 C1orf154 transmembrane protein 69 protein-coding 260-224 chr2 184283411 184283562 + 4 NA Intergenic (TTTAT)n|Simple_repeat|Simple_repeat -95489 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 1067-8 chr5 45426932 45427635 + 4 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 269097 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 504-76 chr14 104381455 104381608 + 4 NA Intergenic L1MEf|LINE|L1 157947 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 642-23 chr11 129673715 129673913 + 4 NA Intergenic L2c|LINE|L2 -56545 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 604-39 chr12 132424177 132424474 + 4 NA Intergenic Intergenic -65826 NM_001367871 57666 Hs.411138 NM_001142641 ENSG00000112787 FBRSL1 - fibrosin like 1 protein-coding 788-55 chr9 29697620 29697954 + 4 NA Intergenic Intergenic -484186 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 566-131 chr3 116548905 116549102 + 4 NA Intergenic L1ME1|LINE|L1 -3470 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 654-15 chr10 26390566 26390913 + 4 NA Intergenic L1MA4A|LINE|L1 -47602 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 488-48 chr11 45383951 45384242 + 4 NA intron (NR_122071, intron 3 of 4) MIRb|SINE|MIR 12699 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 1024-11 chr10 61582501 61582867 + 4 NA Intergenic Intergenic -80245 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 824-11 chr14 59690373 59690867 + 4 NA intron (NM_021136, intron 3 of 8) L1PA15-16|LINE|L1 -43600 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 779-10 chr10 82600914 82601341 + 4 NA intron (NR_163253, intron 3 of 10) L1PA17|LINE|L1 -368207 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 357-70 chr11 83358524 83358632 + 4 NA Intergenic Intergenic -72171 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 609-138 chr8 110584334 110584700 + 4 NA Intergenic Intergenic 442916 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 807-4 chr1 150325603 150325888 + 4 NA intron (NM_004698, intron 2 of 15) intron (NM_004698, intron 2 of 15) 4212 NM_004698 9129 Hs.11776 NM_004698 ENSG00000117360 PRPF3 HPRP3|HPRP3P|PRP3|Prp3p|RP18|SNRNP90 pre-mRNA processing factor 3 protein-coding 1417-8 chrX 63474572 63475181 + 4 NA intron (NR_152612, intron 1 of 2) LTR76|LTR|ERV1 86219 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 732-47 chr2 138234407 138234803 + 4 NA Intergenic Intergenic 132721 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 428-30 chr10 114213542 114213696 + 4 NA intron (NM_198795, intron 15 of 25) intron (NM_198795, intron 15 of 25) -25635 NM_001272046 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 499-179 chr4 36376589 36376784 + 4 NA Intergenic Intergenic 49742 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 837-24 chr22 47414706 47415147 + 4 NA Intergenic L1MC4a|LINE|L1 69355 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 578-88 chr2 80893970 80894246 + 4 NA Intergenic Intergenic 572838 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 556-20 chr10 48964510 48964682 + 4 NA intron (NM_020945, intron 54 of 61) MIRb|SINE|MIR 20991 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 724-3 chr1 88512368 88512627 + 4 NA Intergenic Intergenic -171647 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 904-5 chr10 76370436 76370841 + 4 NA intron (NM_001305581, intron 6 of 6) MER44A|DNA|TcMar-Tigger -517406 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 694-78 chr21 27300500 27300705 + 4 NA Intergenic AluSz6|SINE|Alu -333514 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 601-92 chr3 54199605 54199793 + 4 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 77147 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 534-48 chr11 90343264 90343469 + 4 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 92134 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 564-67 chr16 10390407 10390577 + 4 NA intron (NM_024997, intron 1 of 11) L1M5|LINE|L1 4431 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 653-112 chr7 50080248 50080638 + 4 NA intron (NM_007009, intron 3 of 7) Charlie8|DNA|hAT-Charlie 12803 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 776-40 chr4 119563891 119564186 + 4 NA intron (NM_033437, intron 5 of 20) HAL1|LINE|L1 63699 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 996-23 chr6 106772168 106772520 + 4 NA intron (NR_147986, intron 1 of 3) intron (NR_147986, intron 1 of 3) -11781 NR_030314 693172 NR_030314 ENSG00000207577 MIR587 MIRN587|hsa-mir-587 microRNA 587 ncRNA 683-77 chr7 4894173 4894466 + 4 NA intron (NR_072989, intron 8 of 8) intron (NR_072989, intron 8 of 8) -10603 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 819-12 chr17 50234019 50234450 + 4 NA Intergenic FLAM_C|SINE|Alu 19540 NR_110806 101927230 Hs.514326 NR_110806 LINC01969 - long intergenic non-protein coding RNA 1969 ncRNA 616-69 chr19 36870945 36871169 + 4 NA intron (NM_001242476, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR 19406 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 1570-2 chr5 35556382 35557276 + 4 NA Intergenic L1M3b|LINE|L1 -61034 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 1003-18 chr6 1164494 1164794 + 4 NA Intergenic Intergenic -63312 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 394-105 chr14 66169521 66169713 + 4 NA Intergenic L1ME3A|LINE|L1 -316754 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 394-194 chr2 186721363 186721523 + 4 NA intron (NM_177454, intron 1 of 7) intron (NM_177454, intron 1 of 7) 27383 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 522-229 chr6 162167772 162167912 + 4 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -559290 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 868-27 chr4 100124368 100124753 + 4 NA Intergenic L1MA3|LINE|L1 -65473 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 593-15 chr10 55406175 55406434 + 4 NA intron (NM_001354404, intron 2 of 34) L2a|LINE|L2 -192738 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 592-109 chr3 44700789 44701002 + 4 NA Intergenic Intergenic -11748 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 943-15 chr2 120665428 120665868 + 4 NA Intergenic L1M5|LINE|L1 -70220 NM_001371271 802-21 chr14 60432184 60432523 + 4 NA Intergenic Intergenic 53710 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 644-28 chr17 47769201 47769465 + 4 NA Intergenic Intergenic 36097 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 720-46 chr2 129514533 129514819 + 4 NA Intergenic L1MCa|LINE|L1 -240785 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 829-38 chr7 33214438 33214734 + 4 NA intron (NM_198428, intron 5 of 22) L1MA3|LINE|L1 85022 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 622-51 chr2 27986671 27986872 + 4 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -9596 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 746-80 chr8 79570215 79570517 + 4 NA Intergenic Intergenic -40751 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 384-2 chr1 23247492 23247674 + 4 NA Intergenic L2c|LINE|L2 37935 NR_110616 100996511 Hs.99836 NR_110616 LINC01355 - long intergenic non-protein coding RNA 1355 ncRNA 998-16 chr7 41571516 41572146 + 4 NA Intergenic Intergenic -122088 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 1201-8 chr8 135083777 135084296 + 4 NA Intergenic L1MCc|LINE|L1 -150095 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 819-25 chr5 8832089 8832712 + 4 NA Intergenic L1PB3|LINE|L1 -7332 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 783-33 chr18 1451242 1451582 + 4 NA Intergenic L1MA2|LINE|L1 -91783 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 625-103 chr7 56531910 56532148 + 4 NA Intergenic L1PB1|LINE|L1 6101 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 517-107 chr18 34109151 34109339 + 4 NA intron (NM_001353232, intron 2 of 9) AluJr|SINE|Alu -60633 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 1540 chr12 16133592 16134224 + 4 NA Intergenic Intergenic 143777 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 692-44 chr18 72902614 72902901 + 4 NA Intergenic Intergenic 33717 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 677-19 chr11 50482622 50482939 + 4 NA Intergenic ALR/Alpha|Satellite|centr 73633 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 624-64 chr2 81571785 81572184 + 4 NA Intergenic Intergenic -105038 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 856-7 chr10 31627971 31628318 + 4 NA Intergenic Intergenic -228389 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 1154-7 chr20 62542877 62543543 + 4 NA non-coding (NR_033263, exon 7 of 7) non-coding (NR_033263, exon 7 of 7) -7243 NM_178463 128826 Hs.86507 NM_178463 MIR1-1HG C20orf166|MIR133A2HG MIR1-1 host gene protein-coding 612-2 chr1 71745465 71745712 + 4 NA intron (NM_173808, intron 3 of 6) LTR49-int|LTR|ERV1 91424 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 520-265 chr6 156611935 156612132 + 4 NA Intergenic L1MEd|LINE|L1 -165822 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 679-64 chr20 42769638 42770040 + 4 NA intron (NM_133170, intron 5 of 31) L1ME1|LINE|L1 84356 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 1064-3 chr11 105982680 105983200 + 4 NA TTS (NM_000829) TTS (NM_000829) 39300 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 673-41 chr16 63003865 63004281 + 4 NA Intergenic MLT2A1|LTR|ERVL -967635 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 798-68 chr8 130758749 130759043 + 4 NA Intergenic Intergenic 282013 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 1876 chr7 32111676 32112305 + 4 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -40554 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 636-143 chr8 51585137 51585392 + 4 NA intron (NM_144651, intron 3 of 22) L2|LINE|L2 224181 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 329-255 chr2 6819617 6819774 + 4 NA Intergenic L1ME4b|LINE|L1 20769 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 699-15 chr11 43975670 43975942 + 4 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 33169 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 677-59 chr3 188481144 188481371 + 4 NA intron (NM_001167672, intron 2 of 9) L3b|LINE|CR1 87409 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 1117-5 chr2 33998368 33998993 + 4 NA intron (NR_126403, intron 4 of 5) L1M4|LINE|L1 -68546 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 724-22 chr16 52017323 52017728 + 4 NA Intergenic Intergenic 56410 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 632-48 chr2 34666936 34667176 + 4 NA Intergenic Intergenic -10501 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 878-15 chr14 72777142 72777507 + 4 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 115325 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 545-202 chr6 54969840 54970024 + 4 NA Intergenic Intergenic 123161 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 563-160 chr6 113393244 113393439 + 4 NA Intergenic Intergenic 40106 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 272-282 chr3 161692203 161692321 + 4 NA Intergenic MER21C|LTR|ERVL 195454 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 641-4 chr1 106470892 106471326 + 4 NA Intergenic L1M2|LINE|L1 -347130 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 554-26 chr10 31416113 31416408 + 4 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -16505 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 1071-22 chr7 17574196 17574582 + 4 NA Intergenic L1MEc|LINE|L1 -15480 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 877-34 chr8 120752316 120752623 + 4 NA intron (NM_021021, intron 1 of 6) L1PA15|LINE|L1 -8784 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 737-16 chr12 38788319 38788576 + 4 NA intron (NM_153634, intron 6 of 19) L1MA2|LINE|L1 117144 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 432-224 chr5 83281066 83281189 + 4 NA intron (NM_022550, intron 7 of 7) MIR3|SINE|MIR -190547 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 781-41 chr3 30164180 30164402 + 4 NA Intergenic GA-rich|Low_complexity|Low_complexity -230135 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 804-61 chr7 13588684 13588986 + 4 NA Intergenic L1PA10|LINE|L1 397679 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 1125 chr12 17952389 17952818 + 4 NA Intergenic (ATTAT)n|Simple_repeat|Simple_repeat 137590 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 749-66 chr3 189475915 189476130 + 4 NA Intergenic Intergenic -120724 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 675-90 chr7 106163328 106163569 + 4 NA Intergenic LTR67B|LTR|ERVL -50872 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 718-18 chr12 37962160 37962422 + 4 NA Intergenic ALR/Alpha|Satellite|centr -354483 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 670-53 chr18 70268660 70268891 + 4 NA Intergenic Intergenic -20270 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 681-41 chr2 157160556 157160763 + 4 NA Intergenic MER2B|DNA|TcMar-Tigger -97046 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 457-231 chr7 42057263 42057431 + 4 NA intron (NM_000168, intron 4 of 14) L1PB3|LINE|L1 179862 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 696-14 chr10 84895111 84895531 + 4 NA Intergenic L1MC5|LINE|L1 303584 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 916-5 chr12 133114168 133114491 + 4 NA Intergenic Intergenic 16144 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 705-96 chr8 46870204 46870484 + 4 NA Intergenic L1PA13|LINE|L1 29458 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 652-56 chr17 54168870 54169136 + 4 NA Intergenic Intergenic 346076 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 900-4 chr10 33178386 33178696 + 4 NA non-coding (NR_045259, exon 16 of 16) non-coding (NR_045259, exon 16 of 16) -61734 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 665-29 chr14 45404574 45404793 + 4 NA Intergenic Intergenic -151481 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 1146-4 chr12 28493283 28493705 + 4 NA intron (NM_001352082, intron 13 of 13) MLT1N2|LTR|ERVL-MaLR -302756 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 803-26 chr2 125733820 125734191 + 4 NA Intergenic L2|LINE|L2 383980 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 585-91 chr21 20263456 20263747 + 4 NA Intergenic Intergenic -4916 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 1048-28 chrX 10262659 10263060 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR 105884 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 576-181 chr9 73820328 73820552 + 4 NA Intergenic MIRb|SINE|MIR -551091 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 568-31 chr11 94109439 94109691 + 4 NA intron (NM_001098672, intron 17 of 19) L1ME1|LINE|L1 -19276 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 596-66 chr14 105121917 105122185 + 4 NA Intergenic Intergenic 27904 NR_110546 102723354 Hs.569410 NR_110546 LINC02298 - long intergenic non-protein coding RNA 2298 ncRNA 1382 chr10 114293980 114294529 + 4 NA TTS (NM_001287824) TTS (NM_001287824) 54640 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 1213-3 chr11 50600427 50601043 + 4 NA Intergenic ALR/Alpha|Satellite|centr 191588 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 938-19 chr4 45505565 45505989 + 4 NA Intergenic Intergenic 618277 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 703-31 chr14_GL000225v1_random 6028 6338 + 4 NA NA BSR/Beta|Satellite|Satellite NA NA 850 chr1 49426648 49426964 + 4 NA intron (NR_046839, intron 2 of 3) MIRb|SINE|MIR 45279 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 590-22 chr11 28536680 28537025 + 4 NA Intergenic Intergenic -59304 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 369-101 chr14 28028391 28028517 + 4 NA Intergenic L1MC4|LINE|L1 -355233 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 396-20 chr1 114328210 114328360 + 4 NA Intergenic Intergenic -174416 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 472-224 chr4 44318884 44319221 + 4 NA intron (NM_198353, intron 1 of 1) L2b|LINE|L2 129757 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 870-18 chr2 146401871 146402216 + 4 NA Intergenic Intergenic -185014 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 1040-17 chr6 40145036 40145500 + 4 NA Intergenic Intergenic 210738 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 634-75 chr2 75755616 75755974 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -44880 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 676-14 chr1 232588059 232588415 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie -72629 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 652-113 chr8 9834235 9834534 + 4 NA Intergenic Intergenic 68945 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 750-56 chr4 124842736 124843023 + 4 NA Intergenic L1MCc|LINE|L1 -130147 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 746-69 chr7 15183757 15183959 + 4 NA Intergenic Intergenic -209000 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 375-146 chr15 83685167 83685312 + 4 NA intron (NM_207517, intron 2 of 29) L1ME3C|LINE|L1 31116 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 572-116 chr4 163419 163639 + 4 NA non-coding (NR_110529, exon 2 of 2) non-coding (NR_110529, exon 2 of 2) 35408 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 920-28 chr8 89117712 89118112 + 4 NA Intergenic L1MA9|LINE|L1 639799 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 1153-6 chr17 51870155 51870608 + 4 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 288333 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 627-122 chr8 136283209 136283508 + 4 NA Intergenic Intergenic -247440 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 742-26 chr14 78520427 78520731 + 4 NA intron (NM_004796, intron 1 of 16) MIRc|SINE|MIR 116860 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 327-496 chr8 112048015 112048098 + 4 NA Intergenic AluSq2|SINE|Alu -595437 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 528-3 chr1 31116716 31116978 + 4 NA Intergenic FLAM_A|SINE|Alu -51130 NM_001020658 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 575-150 chr5 61722611 61722778 + 4 NA intron (NR_126524, intron 3 of 3) L1MEc|LINE|L1 13004 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 634-68 chr19 37563566 37563821 + 4 NA TTS (NM_016536) TTS (NM_016536) 12319 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 460-132 chr2 18022058 18022297 + 4 NA Intergenic L1PA16|LINE|L1 143510 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 763-25 chr19 37733142 37733517 + 4 NA Intergenic Intergenic -13568 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 378-92 chr11 114038290 114038447 + 4 NA Intergenic Intergenic -21343 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 542-85 chr18 61695095 61695372 + 4 NA Intergenic MIR|SINE|MIR -52943 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 660-49 chr2 203234283 203234522 + 4 NA Intergenic Intergenic -4039 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 520-190 chr3 94515880 94516035 + 4 NA Intergenic Intergenic -422306 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 1326 chr10 39139607 39140326 + 4 NA Intergenic ALR/Alpha|Satellite|centr 443370 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1278-5 chr8 113888826 113889373 + 4 NA Intergenic Tigger13a|DNA|TcMar-Tigger -452160 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 1186-13 chr3 19800338 19800907 + 4 NA Intergenic MLT1A|LTR|ERVL-MaLR 133595 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 493-124 chr19 2934467 2934650 + 4 NA exon (NM_021217, exon 4 of 4) exon (NM_021217, exon 4 of 4) 10413 NM_021217 58492 Hs.38004 NM_021217 ENSG00000175691 ZNF77 pT1 zinc finger protein 77 protein-coding 1138-14 chr9 35209452 35209888 + 4 NA intron (NM_006377, intron 1 of 38) AluSz|SINE|Alu 47661 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 738-49 chr5 27483218 27483502 + 4 NA intron (NR_038848, intron 3 of 4) intron (NR_038848, intron 3 of 4) 11068 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 806-38 chr22 32940550 32940833 + 4 NA intron (NM_003490, intron 3 of 13) L1ME3|LINE|L1 66130 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 294-62 chr11 78939362 78939449 + 4 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -364541 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 744-80 chrX 58436584 58436796 + 4 NA Intergenic ALR/Alpha|Satellite|centr -526057 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 702-108 chr9 1477232 1477532 + 4 NA Intergenic Intergenic 425895 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 819-8 chr14 83682085 83682385 + 4 NA Intergenic L1MB3|LINE|L1 1039603 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 939-7 chr10 31623770 31624158 + 4 NA Intergenic Intergenic -224209 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 1484-3 chr7 54265829 54266636 + 4 NA Intergenic Intergenic -64465 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 721-3 chr1 71143368 71143776 + 4 NA intron (NR_046217, intron 2 of 3) L1MCb|LINE|L1 62248 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 420-208 chr4 111821063 111821255 + 4 NA Intergenic Charlie16a|DNA|hAT-Charlie -324295 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 827-33 chr3 99522202 99522680 + 4 NA Intergenic LTR33A|LTR|ERVL -116153 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 1038-15 chr6 166063465 166063958 + 4 NA Intergenic L1M5|LINE|L1 -34009 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 475-294 chr9 14573254 14573572 + 4 NA Intergenic Intergenic -41336 NM_001369458 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 774-38 chr19 16754833 16755161 + 4 NA intron (NM_001007525, intron 6 of 18) intron (NM_001007525, intron 6 of 18) 23805 NM_001347994 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 324-135 chr13 26320634 26320836 + 4 NA intron (NM_001318368, intron 1 of 12) L1MB3|LINE|L1 66606 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 695-103 chr8 79043353 79043718 + 4 NA Intergenic HAL1|LINE|L1 206006 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 420-134 chr2 57933069 57933287 + 4 NA intron (NM_001288838, intron 1 of 15) L1MA9|LINE|L1 25527 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 1164-13 chr8 91708807 91709415 + 4 NA Intergenic L1ME1|LINE|L1 308569 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 676-49 chr19 27575924 27576094 + 4 NA Intergenic ALR/Alpha|Satellite|centr -217422 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 776-38 chr4 84096546 84096984 + 4 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 202404 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 1720-2 chr10 76097434 76098476 + 4 NA intron (NM_001305581, intron 5 of 6) L1MA5A|LINE|L1 315194 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 1028-6 chr16 35265864 35266399 + 4 NA Intergenic PRIMA4-int|LTR|ERV1 70372 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 577-204 chr9 82347797 82348028 + 4 NA Intergenic L1PA16|LINE|L1 359140 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 1407-6 chr8 133899815 133900633 + 4 NA intron (NR_125424, intron 3 of 3) L1MEb|LINE|L1 13728 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 749-98 chr8 128243903 128244244 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 93957 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 1000-13 chr2 234644440 234644877 + 4 NA Intergenic L1MEg|LINE|L1 -38010 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 949-17 chr5 81818481 81818978 + 4 NA Intergenic L2a|LINE|L2 -67476 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 857-42 chr4 71627210 71627619 + 4 NA Intergenic AluSz|SINE|Alu 156665 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 581-79 chr2 80785625 80785873 + 4 NA Intergenic Intergenic 472370 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 409-94 chr15 61602397 61602578 + 4 NA Intergenic Intergenic -127431 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 475-272 chr8 20777256 20777477 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -162440 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 599-28 chr12 14231382 14231556 + 4 NA Intergenic HERVH-int|LTR|ERV1 -134163 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 518-309 chr8 141140530 141140749 + 4 NA intron (NM_001362798, intron 3 of 21) L2c|LINE|L2 12050 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 560-113 chr3 83766127 83766383 + 4 NA Intergenic MamGyp-int|LTR|Gypsy 1103320 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 701-65 chr3 120985097 120985447 + 4 NA intron (NR_145517, intron 3 of 8) L1M2|LINE|L1 -64368 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 775-65 chr5 46179015 46179338 + 4 NA Intergenic ALR/Alpha|Satellite|centr -482796 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1067-7 chr2 216820729 216821348 + 4 NA Intergenic Intergenic 39026 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 898-7 chr14 28466462 28466959 + 4 NA Intergenic L1PB4|LINE|L1 298609 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 442-316 chr9 79886441 79886634 + 4 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) 62007 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 652-71 chr2 230109379 230109666 + 4 NA Intergenic L1M1|LINE|L1 -40598 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 603-103 chr22 28157353 28157588 + 4 NA intron (NM_001145418, intron 6 of 22) L1MA2|LINE|L1 -236858 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 694-113 chr6 86377202 86377541 + 4 NA Intergenic Intergenic -560157 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 636-82 chr2 145237753 145238013 + 4 NA Intergenic L2|LINE|L2 569916 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 802-31 chr2 109728130 109728392 + 4 NA Intergenic MLT1G1|LTR|ERVL-MaLR -64497 NM_001037866 729540 Hs.535589 NM_001037866 ENSG00000183054 RGPD6 RGP6|RGPD7|RanBP2L1|RanBP2L2 RANBP2 like and GRIP domain containing 6 protein-coding 637-49 chr17 8907370 8907774 + 4 NA intron (NM_001142633, intron 3 of 18) L1ME4c|LINE|L1 4945 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 796-13 chr12 71474180 71474657 + 4 NA intron (NR_110596, intron 1 of 19) Tigger15a|DNA|TcMar-Tigger 34620 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 922-38 chr8 119165735 119166145 + 4 NA Intergenic MARNA|DNA|TcMar-Mariner -42423 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 513-130 chr2 80786763 80786990 + 4 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 473497 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 1039-12 chr20 42791582 42792221 + 4 NA intron (NM_133170, intron 2 of 31) MLT1H|LTR|ERVL-MaLR 106418 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 1070-9 chr16 48646593 48647238 + 4 NA Intergenic L1MA5A|LINE|L1 -36735 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 856-31 chr3 123256302 123256592 + 4 NA intron (NM_012430, intron 5 of 6) L2c|LINE|L2 54504 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 769-6 chr10 43519237 43519606 + 4 NA Intergenic Intergenic 49038 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 608-52 chr16 77560204 77560550 + 4 NA Intergenic Intergenic -125343 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 636-41 chr14 37956418 37956715 + 4 NA Intergenic L1PB|LINE|L1 -54442 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 492-165 chr22 43781714 43781925 + 4 NA intron (NM_022785, intron 3 of 31) L1MC2|LINE|L1 30486 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 544-195 chr6 64430454 64430615 + 4 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 623698 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 262-296 chr3 173953957 173954052 + 4 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -33208 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 989-3 chr12 128677010 128677414 + 4 NA intron (NM_001136103, intron 5 of 8) MER104|DNA|TcMar-Tc2 146746 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 1031-11 chr2 214516040 214516434 + 4 NA intron (NR_047698, intron 1 of 3) MER63A|DNA|hAT-Blackjack 6055 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 779-28 chr19 9330433 9330751 + 4 NA intron (NM_001202425, intron 1 of 8) L1M3c|LINE|L1 5897 NM_001202425 100529215 Hs.728944 NM_001172650 ENSG00000270011 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 795-7 chr1 181589421 181589721 + 4 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 106054 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 496-307 chr9 91861027 91861168 + 4 NA intron (NM_001318204, intron 1 of 7) L1MB8|LINE|L1 89131 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 700-76 chr5 1742071 1742398 + 4 NA Intergenic L1MC1|LINE|L1 -33366 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 749-20 chr11 22979421 22979757 + 4 NA Intergenic Intergenic -119115 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 763-26 chr19 56384188 56384501 + 4 NA exon (NM_144690, exon 5 of 5) exon (NM_144690, exon 5 of 5) 9190 NM_144690 147948 Hs.244391 NM_144690 ENSG00000018869 ZNF582 - zinc finger protein 582 protein-coding 951-15 chr2 19699399 19699913 + 4 NA Intergenic Intergenic -169198 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 867-45 chr8 142254726 142255053 + 4 NA intron (NM_001366901, intron 12 of 13) intron (NM_001366901, intron 12 of 13) 56533 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 779-43 chr5 35142928 35143250 + 4 NA intron (NM_000949, intron 1 of 9) A-rich|Low_complexity|Low_complexity -24967 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 632-63 chr2 183541126 183541383 + 4 NA Intergenic MIRb|SINE|MIR 416811 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 637-41 chr14 87366196 87366404 + 4 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 288994 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 698-16 chr11 50605183 50605448 + 4 NA Intergenic ALR/Alpha|Satellite|centr 196168 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 366-256 chr21 28315074 28315240 + 4 NA Intergenic L1M4|LINE|L1 -86490 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 501-223 chr5 162853445 162853623 + 4 NA Intergenic Intergenic -584037 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 1447-4 chr19 52467786 52468524 + 4 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 14602 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 718-29 chr15 91186651 91186869 + 4 NA intron (NM_001323040, intron 2 of 12) L1PB4|LINE|L1 84964 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 616-15 chr10 48869686 48869926 + 4 NA intron (NM_020945, intron 40 of 61) intron (NM_020945, intron 40 of 61) 44429 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 1204-6 chr5 31303324 31303818 + 4 NA intron (NM_001362435, intron 6 of 10) intron (NM_001362435, intron 6 of 10) 109885 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1025-3 chr10 111612879 111613286 + 4 NA Intergenic L1MB8|LINE|L1 498791 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 1182-17 chr8 51789640 51790143 + 4 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 19554 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 590-173 chr8 127014621 127014887 + 4 NA intron (NR_045262, intron 1 of 1) intron (NR_045262, intron 1 of 1) 1600 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 714 chr1 13980950 13981379 + 4 NA Intergenic Intergenic 231749 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 611-49 chr16 8425962 8426264 + 4 NA Intergenic MLT1F1|LTR|ERVL-MaLR 163725 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1073-16 chr8 134068939 134069531 + 4 NA Intergenic L1MEd|LINE|L1 182739 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 537-244 chr8 32353832 32353980 + 4 NA intron (NM_013962, intron 1 of 4) L1ME1|LINE|L1 -86840 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 891-22 chr20 58487155 58487556 + 4 NA intron (NR_130908, intron 1 of 1) L1ME3F|LINE|L1 27583 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 577-36 chr10 115124049 115124353 + 4 NA intron (NM_001276282, intron 3 of 7) MER21C|LTR|ERVL 30836 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 652-24 chr11 24913092 24913301 + 4 NA intron (NM_001009909, intron 6 of 11) L1ME1|LINE|L1 416143 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 1018-30 chr6 67157496 67157824 + 4 NA Intergenic Intergenic -897691 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 810-27 chr20 40419171 40419527 + 4 NA Intergenic L1ME5|LINE|L1 269887 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 838-39 chr8 90890080 90890539 + 4 NA intron (NM_022351, intron 5 of 12) THE1D|LTR|ERVL-MaLR 94768 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 513-177 chr3 51297496 51297719 + 4 NA intron (NM_004947, intron 27 of 52) L1M4|LINE|L1 -87684 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 702-37 chr18 68083795 68084138 + 4 NA Intergenic LTR80B|LTR|ERVL -269144 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 648-86 chr3 54598419 54598620 + 4 NA intron (NM_018398, intron 9 of 37) intron (NM_018398, intron 9 of 37) 41338 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 632-76 chr3 94813541 94813809 + 4 NA Intergenic L2c|LINE|L2 -124588 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 642-65 chr20 58775128 58775417 + 4 NA TTS (NR_134566) TTS (NR_134566) 1847 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 1270-2 chr14 37613962 37614673 + 4 NA intron (NM_001310135, intron 2 of 32) L1ME1|LINE|L1 18688 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 643-49 chr19 46560989 46561212 + 4 NA intron (NM_001370550, intron 1 of 2) intron (NM_001370550, intron 1 of 2) 39816 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 663-27 chr12 41943396 41943752 + 4 NA Intergenic L1ME3|LINE|L1 179385 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 780-55 chr6 42435383 42435668 + 4 NA intron (NM_001297573, intron 2 of 17) AluJb|SINE|Alu 16526 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 582-56 chr18 1096333 1096558 + 4 NA Intergenic L1MB3|LINE|L1 -168452 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 647-49 chr2 115811849 115812121 + 4 NA intron (NM_001321912, intron 20 of 25) intron (NM_001321912, intron 20 of 25) 468170 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 550-156 chr3 189745767 189746161 + 4 NA intron (NM_003722, intron 3 of 13) L1MA4A|LINE|L1 -43695 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 343-427 chr5 65075116 65075302 + 4 NA Intergenic MLT1H1|LTR|ERVL-MaLR 306279 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 534-11 chr1 158298007 158298193 + 4 NA Intergenic L1PA13|LINE|L1 8177 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 948-7 chr11 86700954 86701404 + 4 NA Intergenic Intergenic -28543 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 832-17 chr2 229499701 229499936 + 4 NA intron (NM_139072, intron 6 of 12) L1M2|LINE|L1 214737 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 626-157 chrX 152053650 152053859 + 4 NA Intergenic L1MB5|LINE|L1 64185 NM_021049 4104 Hs.18048 NM_021049 MAGEA5 CT1.5|MAGE5|MAGEA4 MAGE family member A5 protein-coding 646-125 chr8 83061741 83062063 + 4 NA Intergenic Intergenic 149798 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 677-8 chr1 154085332 154085725 + 4 NA intron (NM_001159484, intron 16 of 37) L1MB7|LINE|L1 19064 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 1045-10 chr2 112037379 112037816 + 4 NA Intergenic L1MB3|LINE|L1 -17672 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 852-24 chr2 25347125 25347637 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -4791 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 1242-3 chr14 84216752 84217260 + 4 NA Intergenic MLT-int|LTR|ERVL-MaLR -1054926 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 410-5 chr1 79083871 79084073 + 4 NA Intergenic MIR|SINE|MIR -77242 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 444-271 chr8 126975393 126975608 + 4 NA Intergenic Intergenic -37654 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 689-49 chr2 114740533 114740771 + 4 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 92896 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 1073-12 chr4 61536082 61536686 + 4 NA intron (NM_001371343, intron 4 of 23) L1PA17|LINE|L1 334212 NM_001371342 849-45 chr8 25107585 25107975 + 4 NA Intergenic Intergenic -76909 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 1409-6 chr8 83870550 83871038 + 4 NA Intergenic Intergenic -311993 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 776-41 chr4 133021907 133022235 + 4 NA Intergenic L2c|LINE|L2 127045 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 817-25 chr2 44631934 44632365 + 4 NA intron (NM_024766, intron 3 of 10) L1ME2|LINE|L1 270202 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 521-44 chr11 33579956 33580184 + 4 NA intron (NM_012194, intron 10 of 20) intron (NM_012194, intron 10 of 20) 120670 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 568-13 chr10 53552316 53552613 + 4 NA Intergenic L1MCc|LINE|L1 -780764 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 568-79 chr17 54100636 54100897 + 4 NA Intergenic L3|LINE|CR1 277839 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 818-7 chr11 12655904 12656270 + 4 NA Intergenic L1MC4|LINE|L1 -18334 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 662-39 chr18 37068411 37068653 + 4 NA intron (NM_001353919, intron 6 of 8) L1MDa|LINE|L1 -144718 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 983-5 chr13 81468305 81468738 + 4 NA Intergenic Intergenic -241538 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 968-13 chr3 41538145 41538550 + 4 NA intron (NR_136342, intron 30 of 34) Tigger2|DNA|TcMar-Tigger 338842 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 380-153 chr17 61078811 61079002 + 4 NA intron (NM_001330413, intron 22 of 25) CR1-16_AMi|LINE|CR1 288798 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 1104-6 chr20 5343452 5343941 + 4 NA Intergenic L1MB3|LINE|L1 -26964 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 762-21 chr13 109363766 109364103 + 4 NA Intergenic Intergenic -36762 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 286-219 chr2 135340881 135340965 + 4 NA intron (NM_001286569, intron 6 of 21) L1M5|LINE|L1 189662 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 1341-5 chr6 159378287 159378787 + 4 NA Intergenic Intergenic -4994 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 871-21 chr3 132982966 132983330 + 4 NA Intergenic Intergenic -55140 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 601-22 chr11 48220802 48220975 + 4 NA Intergenic Intergenic 4078 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 758-8 chr10 33073146 33073482 + 4 NA TTS (NR_160030) TTS (NR_160030) 43493 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 564-149 chr5 13595908 13596174 + 4 NA Intergenic L1MC4a|LINE|L1 348439 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 622-128 chr7 49731541 49731796 + 4 NA Intergenic Intergenic -41970 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 602-25 chr12 23216344 23216610 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 40841 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 792-20 chr13 89931781 89932141 + 4 NA Intergenic MER92-int|LTR|ERV1 187756 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 1180-2 chr10 36286226 36286745 + 4 NA Intergenic L1MA8|LINE|L1 508183 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 506-147 chr2 81032042 81032266 + 4 NA Intergenic L1M1|LINE|L1 434792 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 570-62 chr14 72048218 72048451 + 4 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 114807 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 692-78 chr5 113883110 113883418 + 4 NA Intergenic L1MB3|LINE|L1 369570 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 805-33 chr4 37830685 37830889 + 4 NA intron (NM_018290, intron 2 of 13) intron (NM_018290, intron 2 of 13) 4101 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 461-167 chr3 34894361 34894524 + 4 NA intron (NR_110817, intron 2 of 3) L2|LINE|L2 499581 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 689-85 chr6 21410403 21410668 + 4 NA Intergenic L1MEd|LINE|L1 101357 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1045-23 chr8 78914417 78914892 + 4 NA Intergenic L1MC3|LINE|L1 77125 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 714-73 chr8 88634102 88634280 + 4 NA Intergenic L1MC3|LINE|L1 -306708 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 938-8 chr14 68179244 68179686 + 4 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 355873 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 682-34 chr14 104330122 104330327 + 4 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 106640 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 1020-15 chr4 33707816 33708191 + 4 NA Intergenic L1MB1|LINE|L1 331890 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 849 chr1 22305391 22305656 + 4 NA Intergenic L1MA7|LINE|L1 39284 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 742-65 chr5 156293923 156294248 + 4 NA Intergenic L1MB3|LINE|L1 -32672 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 1004-7 chr14 38365260 38365665 + 4 NA Intergenic Intergenic -109369 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 769-32 chr2 150297330 150297829 + 4 NA Intergenic L1MC|LINE|L1 -40572 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 612-88 chr3 55542585 55542833 + 4 NA intron (NM_015576, intron 16 of 16) intron (NM_015576, intron 16 of 16) -55067 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 941-14 chr2 133026407 133026823 + 4 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 111058 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 1422-2 chr19 37412459 37413168 + 4 NA exon (NM_001330482, exon 5 of 5) exon (NM_001330482, exon 5 of 5) 41714 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 536-218 chr7 54200379 54200668 + 4 NA Intergenic Intergenic -130174 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 637-63 chr2 80618037 80618355 + 4 NA intron (NM_001282599, intron 11 of 11) intron (NM_001282599, intron 11 of 11) 304817 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 687-6 chr1 187752325 187752676 + 4 NA Intergenic Intergenic 308872 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 729-44 chr20 43267809 43268142 + 4 NA Intergenic Intergenic -78069 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 771-64 chr4 128501287 128501647 + 4 NA intron (NR_125882, intron 6 of 8) L1M2c|LINE|L1 73451 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 761-46 chr3 118811552 118811801 + 4 NA promoter-TSS (NR_135547) promoter-TSS (NR_135547) -843 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 803-42 chr5 34980285 34980727 + 4 NA Intergenic MER41D|LTR|ERV1 50913 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 1001-9 chr16 82352677 82353258 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -182743 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 303-358 chr5 57964162 57964309 + 4 NA Intergenic L1PB4|LINE|L1 -65073 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 636-166 chrX 69740844 69741115 + 4 NA intron (NM_001005613, intron 2 of 2) L1M4b|LINE|L1 124866 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 814-34 chr2 59602860 59603225 + 4 NA Intergenic L1ME2|LINE|L1 385334 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 412-42 chr10 117410855 117411016 + 4 NA Intergenic Intergenic -35495 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 2749 chr5 68576407 68577784 + 4 NA Intergenic L1M7|LINE|L1 284518 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 1201-7 chr8 133785973 133786511 + 4 NA Intergenic Intergenic -8890 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 752-72 chr8 114513300 114513662 + 4 NA Intergenic L1MC|LINE|L1 -1076542 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 605-111 chr7 43364656 43364898 + 4 NA intron (NM_001287059, intron 5 of 27) intron (NM_001287059, intron 5 of 27) 157765 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 682-99 chr8 43620911 43621161 + 4 NA Intergenic ALR/Alpha|Satellite|centr 328594 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 762-15 chr12 6175501 6175787 + 4 NA Intergenic L1MC5|LINE|L1 -24302 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 685-24 chr14 90471749 90471963 + 4 NA Intergenic L1MC5a|LINE|L1 16626 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 636-33 chr12 130696249 130696543 + 4 NA intron (NM_001351226, intron 1 of 21) MER113|DNA|hAT-Charlie 19903 NM_001351226 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 484-60 chr14 47098516 47098721 + 4 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 244628 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 922-20 chr2 182120956 182121304 + 4 NA intron (NR_048566, intron 5 of 5) intron (NR_048566, intron 5 of 5) 120933 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 549-83 chr18 4531074 4531232 + 4 NA Intergenic L1MA2|LINE|L1 -75846 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 531-136 chr20 24869847 24870105 + 4 NA Intergenic L1MB7|LINE|L1 -79293 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 659-83 chr4 77986489 77986800 + 4 NA Intergenic Intergenic -70679 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 406-232 chr5 94657299 94657519 + 4 NA intron (NM_032290, intron 9 of 20) L1M2b|LINE|L1 38740 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 789-24 chr2 122653598 122653916 + 4 NA Intergenic Intergenic 419724 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 628-139 chr9 72634097 72634460 + 4 NA intron (NM_138691, intron 4 of 23) LTR8B|LTR|ERV1 112477 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 690-40 chr15 26602185 26602488 + 4 NA intron (NM_001191320, intron 2 of 6) L1MA2|LINE|L1 26754 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 1101-19 chr8 77551574 77552079 + 4 NA Intergenic Intergenic 101129 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 1964-2 chr4 49154442 49155652 + 4 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 168405 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 639-27 chr12 27473412 27473680 + 4 NA intron (NM_001145010, intron 3 of 8) MLT1C|LTR|ERVL-MaLR 6736 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 468-53 chr12 3484501 3484688 + 4 NA non-coding (NR_126055, exon 2 of 2) non-coding (NR_126055, exon 2 of 2) -6609 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 873-37 chr8 75923479 75923924 + 4 NA Intergenic Intergenic 383733 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 568-70 chr16 20232712 20232897 + 4 NA Intergenic L2c|LINE|L2 94709 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 850-32 chr4 32509214 32509581 + 4 NA Intergenic Intergenic 158359 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 832-46 chr8 139909913 139910335 + 4 NA intron (NM_001160372, intron 20 of 22) intron (NM_001160372, intron 20 of 22) 190411 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1050-8 chr19 24349287 24349741 + 4 NA Intergenic ALR/Alpha|Satellite|centr -186067 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 521-174 chr4 30653957 30654286 + 4 NA Intergenic Intergenic -66248 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1126-4 chr19 6932347 6932735 + 4 NA intron (NM_001256252, intron 16 of 19) L1MEd|LINE|L1 44962 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 1244-8 chr6 125468218 125468803 + 4 NA Intergenic L2a|LINE|L2 -166543 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 366-398 chr7 4393189 4393438 + 4 NA Intergenic HAL1|LINE|L1 -258476 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 807-9 chr11 81698674 81698979 + 4 NA Intergenic L1M2|LINE|L1 192010 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 461-108 chr18 411126 411284 + 4 NA intron (NM_130386, intron 2 of 9) L1MD1|LINE|L1 89496 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 638-90 chr3 82948009 82948286 + 4 NA Intergenic Intergenic 962005 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 1049-18 chr7 42468754 42469262 + 4 NA Intergenic Intergenic -231799 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 870-26 chr4 91204165 91204584 + 4 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 969343 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 654-30 chr13 25058863 25059129 + 4 NA Intergenic Intergenic -37142 NM_030979 5042 Hs.458280 NM_030979 ENSG00000151846 PABPC3 PABP3|PABPL3|tPABP poly(A) binding protein cytoplasmic 3 protein-coding 1232 chr1 82280196 82280873 + 4 NA Intergenic L2|LINE|L2 478081 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 534-2 chr1 30177344 30177528 + 4 NA Intergenic MER101-int|LTR|ERV1 -139824 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 720-89 chr8 95743320 95743607 + 4 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 204885 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 680-60 chr2 106325886 106326226 + 4 NA Intergenic MER39B|LTR|ERV1 -43689 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 486-175 chr20 49210547 49210755 + 4 NA intron (NM_001319135, intron 1 of 14) intron (NM_001319135, intron 1 of 14) 8644 NM_001319135 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 612-7 chr1 172861822 172862069 + 4 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 189018 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 782-36 chr20 21603089 21603295 + 4 NA intron (NR_109880, intron 1 of 3) L2c|LINE|L2 33168 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 260-373 chr6 56213129 56213234 + 4 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 34399 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 610-85 chr2 117644342 117644588 + 4 NA Intergenic Intergenic -170226 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 419-303 chr8 133214183 133214340 + 4 NA intron (NM_001204869, intron 2 of 2) HAL1ME|LINE|L1 23222 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 783-65 chr6 54985558 54985900 + 4 NA Intergenic L1PA14|LINE|L1 -120731 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 540-227 chr9 73094457 73094713 + 4 NA Intergenic Intergenic -57280 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 818-20 chr14 63077390 63077750 + 4 NA Intergenic LTR37-int|LTR|ERV1 -32112 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 721-51 chr22 26949119 26949580 + 4 NA Intergenic Intergenic 46057 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 1164-5 chr2 62872191 62872815 + 4 NA intron (NM_001142615, intron 9 of 22) intron (NM_001142615, intron 9 of 22) 165606 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 1242-13 chr7 116091072 116091761 + 4 NA Intergenic Intergenic -60653 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 554-149 chr3 144003857 144004018 + 4 NA Intergenic Intergenic 30856 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 670-116 chr7 116024226 116024533 + 4 NA intron (NM_012252, intron 1 of 7) intron (NM_012252, intron 1 of 7) 6384 NM_001018058 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 624-121 chr8 124680515 124680794 + 4 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 47819 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 1243-9 chr3 192111388 192111908 + 4 NA Intergenic Intergenic -126982 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 724-80 chr6 40143703 40144035 + 4 NA Intergenic Intergenic -209407 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 620-59 chr19 52366661 52367007 + 4 NA 3' UTR (NM_001161426, exon 6 of 6) 3' UTR (NM_001161426, exon 6 of 6) -3089 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 716-5 chr1 224911442 224911722 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -18072 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 693-68 chr3 62883018 62883325 + 4 NA Intergenic Intergenic -7755 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 568-55 chr14 75613348 75613587 + 4 NA intron (NM_001195283, intron 1 of 9) MSTA|LTR|ERVL-MaLR 7927 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 548-246 chr8 140027054 140027260 + 4 NA intron (NM_001160372, intron 17 of 22) L2c|LINE|L2 73378 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 714-18 chr12 97033960 97034176 + 4 NA Intergenic Intergenic 126602 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 640-152 chrX 101913253 101913450 + 4 NA intron (NM_001282401, intron 1 of 8) L1MA1|LINE|L1 18676 NM_001282400 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 404-297 chr7 103612880 103613013 + 4 NA intron (NM_005045, intron 20 of 64) intron (NM_005045, intron 20 of 64) -166739 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 1547-2 chr2 83427929 83428555 + 4 NA Intergenic L1MA8|LINE|L1 -94572 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 710-13 chr10 67114177 67114504 + 4 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 102074 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 430-319 chr8 124610078 124610207 + 4 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 71019 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 885-16 chr4 83701492 83701835 + 4 NA Intergenic Intergenic 165555 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 494-169 chr3 36038016 36038313 + 4 NA Intergenic L1MA6|LINE|L1 293688 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 692-31 chr16 6672468 6672785 + 4 NA intron (NM_018723, intron 3 of 15) MLT1K|LTR|ERVL-MaLR -101183 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 636-144 chr8 83886362 83886642 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger -296285 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 917-10 chr16 77873004 77873326 + 4 NA intron (NM_020927, intron 4 of 8) intron (NM_020927, intron 4 of 8) 84601 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 1512-4 chr5 135618605 135619204 + 4 NA intron (NM_001349335, intron 1 of 10) L1MA4A|LINE|L1 35031 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 967-22 chr6 137836203 137836746 + 4 NA intron (NR_049793, intron 3 of 3) Tigger16a|DNA|TcMar-Tigger -30785 NM_001270507 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 810-44 chr5 89828226 89828609 + 4 NA Intergenic Intergenic 188303 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 568-127 chr22 48232400 48232681 + 4 NA Intergenic L1MEd|LINE|L1 -41824 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 471-218 chr5 145621491 145621763 + 4 NA Intergenic L1MA5|LINE|L1 213715 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 662-17 chr12 90176889 90177184 + 4 NA Intergenic Intergenic -116282 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 1222-7 chr3 61015536 61016014 + 4 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 235677 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 947-14 chr2 76646530 76647048 + 4 NA Intergenic L1MB5|LINE|L1 -339176 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 828-9 chr10 49086415 49086884 + 4 NA intron (NM_001031746, intron 2 of 7) intron (NM_001031746, intron 2 of 7) 28873 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 688-117 chr9 135377184 135377471 + 4 NA Intergenic Intergenic 34078 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 503-278 chr8 88953694 88953884 + 4 NA Intergenic Intergenic -626306 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 702-16 chr11 93350835 93351159 + 4 NA intron (NM_181645, intron 2 of 13) (TA)n|Simple_repeat|Simple_repeat 20280 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 667-31 chr15 58274557 58274912 + 4 NA Intergenic Intergenic 136353 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 767-56 chr8 131212979 131213224 + 4 NA Intergenic L1M2|LINE|L1 -172192 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 770-46 chr20 31063112 31063396 + 4 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -194410 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 537-136 chr20 1101354 1101563 + 4 NA Intergenic L1MB7|LINE|L1 -11771 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 418-162 chr3 94438428 94438605 + 4 NA Intergenic AluY|SINE|Alu 375455 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 519-169 chr5 3174973 3175250 + 4 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -2724 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 598-24 chr10 93127378 93127592 + 4 NA Intergenic AluSz6|SINE|Alu 53592 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 476-281 chr9 28588407 28588596 + 4 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 130804 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 499-118 chr2 56736174 56736427 + 4 NA Intergenic Intergenic -550530 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1561-3 chr9 101408031 101408882 + 4 NA exon (NM_001278231, exon 3 of 3) exon (NM_001278231, exon 3 of 3) 9602 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 638-63 chr2 6844300 6844597 + 4 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -3984 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 660-112 chr8 135939536 135939748 + 4 NA Intergenic L1MCb|LINE|L1 482186 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1568 chr10 105607513 105608023 + 4 NA Intergenic AluY|SINE|Alu 212565 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 498-32 chr10 65058824 65059013 + 4 NA Intergenic L1MA4A|LINE|L1 -134400 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 727-94 chr9 90651367 90651653 + 4 NA Intergenic L1MB3|LINE|L1 -8686 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 566-66 chr17 44143799 44144063 + 4 NA intron (NM_001171251, intron 1 of 9) intron (NM_001171251, intron 1 of 9) 2001 NM_024032 78995 Hs.437059 NM_024032 ENSG00000125319 C17orf53 - chromosome 17 open reading frame 53 protein-coding 922-36 chr8 46499178 46499690 + 4 NA Intergenic ALR/Alpha|Satellite|centr 118209 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 541-29 chr11 18876263 18876548 + 4 NA Intergenic Intergenic 58597 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 349-482 chr7 126173644 126173836 + 4 NA Intergenic Intergenic 884444 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 915-11 chr2 192847169 192847485 + 4 NA Intergenic LTR80A|LTR|ERVL 97482 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 448-245 chr6 118945800 118945989 + 4 NA Intergenic L1MA3|LINE|L1 -10732 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 530-235 chr7 63836966 63837211 + 4 NA Intergenic L1PA17|LINE|L1 -161718 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 1027-3 chr12 133058763 133059119 + 4 NA 3' UTR (NM_003428, exon 5 of 5) 3' UTR (NM_003428, exon 5 of 5) -21262 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 606-5 chr1 104545910 104546162 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 473013 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 558-85 chr19 21906311 21906505 + 4 NA Intergenic BSR/Beta|Satellite|Satellite -54340 NM_001256653 7594 Hs.534365 NM_003423 ENSG00000198521 ZNF43 HTF6|KOX27|ZNF39L1 zinc finger protein 43 protein-coding 644-47 chr20 6548313 6548665 + 4 NA Intergenic L1MB8|LINE|L1 121757 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 561-123 chr3 7641751 7642023 + 4 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -106603 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 593-46 chr14 70129313 70129625 + 4 NA intron (NM_033262, intron 2 of 7) MIRb|SINE|MIR -49252 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 875-23 chr4 33870488 33870949 + 4 NA Intergenic Intergenic 169175 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 643-95 chr5 82796780 82796947 + 4 NA Intergenic MER74B|LTR|ERVL -43292 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 709-13 chr11 78419604 78419846 + 4 NA Intergenic Intergenic -1905 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 2151 chr14 71310523 71311573 + 4 NA Intergenic Intergenic -9428 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 772-22 chr16 8223058 8223357 + 4 NA Intergenic L1PA5|LINE|L1 366631 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 477-224 chr4 62185640 62185779 + 4 NA Intergenic Intergenic -23944 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1062-9 chr2 107643773 107644188 + 4 NA Intergenic L1MB1|LINE|L1 -110132 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 586-157 chr8 121635736 121636000 + 4 NA intron (NM_005328, intron 1 of 3) intron (NM_005328, intron 1 of 3) -3478 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 638-82 chr3 31258577 31258763 + 4 NA Intergenic L1MA9|LINE|L1 -96883 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 520-181 chr3 20797868 20798073 + 4 NA Intergenic Intergenic 455502 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 681-36 chr19 53294490 53294769 + 4 NA Intergenic Intergenic -3195 NR_159880 112401 Hs.348263 NM_033341 ENSG00000163098 BIRC8 ILP-2|ILP2|RNF136|hILP2 baculoviral IAP repeat containing 8 pseudo 611-108 chr4 101556529 101556742 + 4 NA Intergenic Intergenic 208858 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 569-164 chr7 21836297 21836446 + 4 NA intron (NM_001277115, intron 65 of 81) L1MA5|LINE|L1 109528 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 642-81 chr4 54704943 54705247 + 4 NA intron (NM_000222, intron 5 of 20) intron (NM_000222, intron 5 of 20) 47167 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 639-114 chr8 85183464 85183664 + 4 NA intron (NM_001083588, intron 1 of 7) L1MB2|LINE|L1 -4101 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 952-21 chr4 31178532 31179055 + 4 NA intron (NR_125935, intron 2 of 4) MIRb|SINE|MIR 7649 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 503-300 chr9 28748200 28748402 + 4 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -28996 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1774 chr8 128321398 128322204 + 4 NA Intergenic Intergenic 171685 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 638-31 chr12 125737854 125738173 + 4 NA Intergenic Intergenic 115561 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 940-11 chr2 38384328 38384796 + 4 NA Intergenic Intergenic -5978 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 690-43 chr15 57984468 57984732 + 4 NA intron (NM_170696, intron 6 of 11) L1MB7|LINE|L1 29423 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 1205-6 chr19 57012268 57012986 + 4 NA Intergenic Intergenic -107514 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 811-2 chr1 82645553 82645906 + 4 NA Intergenic L1ME2z|LINE|L1 -257454 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 700-51 chr2 152895214 152895391 + 4 NA Intergenic Intergenic 176665 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 622-140 chr8 99377161 99377370 + 4 NA intron (NM_017890, intron 19 of 61) L1MEd|LINE|L1 159465 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 1099-15 chr21 27502779 27503278 + 4 NA Intergenic Intergenic -219351 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1044-3 chr11 79809253 79809887 + 4 NA Intergenic MIR|SINE|MIR -368540 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 611-155 chr9 96838409 96838626 + 4 NA intron (NM_001346995, intron 2 of 3) L1MDa|LINE|L1 15997 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 946-2 chr11 50679170 50679625 + 4 NA Intergenic ALR/Alpha|Satellite|centr 270250 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 662-90 chr7 109855382 109855701 + 4 NA Intergenic Intergenic 104672 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 598-78 chr2 181789631 181789808 + 4 NA Intergenic Intergenic -102011 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 995-4 chr14 35109657 35110114 + 4 NA exon (NM_001305156, exon 4 of 13) exon (NM_001305156, exon 4 of 13) 12657 NM_001305155 55012 Hs.530712 NM_017917 ENSG00000092020 PPP2R3C C14orf10|G4-1|G5pr|GDRM|SPGF36 protein phosphatase 2 regulatory subunit B''gamma protein-coding 869-28 chr2 28122886 28123223 + 4 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 83907 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 658-113 chr7 28366161 28366344 + 4 NA intron (NM_182899, intron 1 of 9) Charlie2b|DNA|hAT-Charlie -46266 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 630-55 chr2 80174721 80174957 + 4 NA intron (NM_001282598, intron 7 of 17) L2b|LINE|L2 129913 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 708-54 chr4 66463792 66464076 + 4 NA Intergenic Intergenic 187110 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 779-2 chr1 42514281 42514644 + 4 NA intron (NM_001355227, intron 6 of 18) L1MB7|LINE|L1 -18558 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 544-187 chr5 124099098 124099272 + 4 NA intron (NR_125774, intron 4 of 5) L1MD3|LINE|L1 339335 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 457-122 chr2 122317592 122317856 + 4 NA Intergenic L2a|LINE|L2 562073 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 950-27 chr7 4514977 4515454 + 4 NA Intergenic Intergenic -167080 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1047-8 chr14 53841604 53842036 + 4 NA Intergenic Intergenic 106664 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 737-31 chr17 55995644 55996002 + 4 NA Intergenic Intergenic -157652 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 730 chr1 37115870 37116166 + 4 NA Intergenic L1ME3E|LINE|L1 -45545 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 578-31 chr10 84236623 84236904 + 4 NA intron (NM_015613, intron 2 of 3) L1ME3G|LINE|L1 4783 NM_015613 26103 Hs.226000 NM_015613 ENSG00000148602 LRIT1 FIGLER9|LRRC21|PAL leucine rich repeat, Ig-like and transmembrane domains 1 protein-coding 958-11 chr16 3378616 3378988 + 4 NA Intergenic Intergenic -6134 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 594-125 chr6 44367262 44367462 + 4 NA intron (NM_145026, intron 5 of 8) L2c|LINE|L2 -20344 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 639-68 chr2 229203368 229203640 + 4 NA intron (NM_001100818, intron 1 of 2) MER6B|DNA|TcMar-Tigger 28588 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 540-145 chr3 98749947 98750198 + 4 NA intron (NM_001323366, intron 1 of 11) intron (NM_001323366, intron 1 of 11) -13235 NM_001323367 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 721-45 chr20 15332436 15332723 + 4 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 135739 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 1137-4 chr20 33168960 33169513 + 4 NA exon (NM_080574, exon 2 of 9) exon (NM_080574, exon 2 of 9) 1077 NM_080574 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 1007-20 chr8 137216575 137216933 + 4 NA Intergenic Tigger9b|DNA|TcMar-Tigger 196834 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1119-3 chr2 72393725 72394408 + 4 NA intron (NM_001321729, intron 18 of 22) intron (NM_001321729, intron 18 of 22) -246204 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 1001-5 chr10 59923656 59924029 + 4 NA Intergenic L1MB2|LINE|L1 -17286 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 677-48 chr20 16210502 16210722 + 4 NA Intergenic L2a|LINE|L2 -224730 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 659-93 chr5 114738030 114738328 + 4 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 35234 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 674-2 chr1 77254874 77255190 + 4 NA Intergenic L1M1|LINE|L1 -26987 NM_174858 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 786-65 chr8 82519508 82519847 + 4 NA Intergenic Intergenic -392427 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 601-84 chr2 228983036 228983365 + 4 NA Intergenic Intergenic 248892 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 488-137 chr2 79191734 79191918 + 4 NA Intergenic MER72|LTR|ERV1 -32073 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 743-89 chr8 141916084 141916303 + 4 NA Intergenic L1ME3D|LINE|L1 -129880 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 374-182 chr2 59353106 59353327 + 4 NA Intergenic Intergenic 135508 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 702-12 chr11 3349352 3349587 + 4 NA Intergenic Intergenic 29677 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 262-228 chr2 155366899 155366989 + 4 NA Intergenic Intergenic 668249 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 400-357 chr8 139152020 139152198 + 4 NA Intergenic Intergenic -238068 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 665-104 chr8 62380136 62380437 + 4 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 131432 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 701-69 chr4 61010583 61010866 + 4 NA Intergenic (ACAT)n|Simple_repeat|Simple_repeat 88105 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 865-43 chr8 101756183 101756524 + 4 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 34616 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 793-36 chr4 38846894 38847235 + 4 NA intron (NM_006068, intron 1 of 1) L1ME4a|LINE|L1 9753 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 545-146 chr3 110487861 110488177 + 4 NA Intergenic L1M3b|LINE|L1 581940 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 932-17 chr4 59074464 59074911 + 4 NA Intergenic Intergenic 61114 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 376-368 chr7 33178572 33178742 + 4 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 49093 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 392-16 chr1 229351371 229351567 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -8422 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 431-181 chr3 88489182 88489365 + 4 NA Intergenic Intergenic 150817 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 464-25 chr10 94437666 94437888 + 4 NA intron (NM_015188, intron 1 of 12) L1ME3F|LINE|L1 35236 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 888-22 chr2 114103235 114103607 + 4 NA Intergenic L1MB7|LINE|L1 -123437 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 791-22 chr14 72168584 72168886 + 4 NA intron (NM_001370288, intron 2 of 16) MER115|DNA|hAT-Tip100 235208 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 835-13 chr12 60486900 60487146 + 4 NA Intergenic Intergenic 797653 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 810-24 chr2 153752866 153753200 + 4 NA Intergenic L1M1|LINE|L1 -118889 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 585-79 chr2 125894306 125894570 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 223547 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 568-4 chr1 159505113 159505387 + 4 NA Intergenic L1MA4|LINE|L1 30757 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 873-4 chr10 52701773 52702005 + 4 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 53515 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 656-52 chr2 50874642 50874830 + 4 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 157396 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1229-5 chr5 46303098 46303728 + 4 NA Intergenic ALR/Alpha|Satellite|centr -607033 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 905-6 chr12 13785520 13785858 + 4 NA intron (NM_000834, intron 2 of 12) MIRb|SINE|MIR 194667 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 568-78 chr17 34218412 34218687 + 4 NA Intergenic L1PA5|LINE|L1 -34917 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 626-72 chr2 127305714 127305906 + 4 NA 3' UTR (NM_006609, exon 16 of 16) 3' UTR (NM_006609, exon 16 of 16) -11634 NM_000122 2071 Hs.469872 NM_000122 ENSG00000163161 ERCC3 BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding 1223-5 chr17 61651360 61651916 + 4 NA Intergenic L1MEf|LINE|L1 -60419 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 558-176 chr5 56431706 56431876 + 4 NA Intergenic AluJr|SINE|Alu 49978 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 1151-5 chr17 61623160 61623719 + 4 NA Intergenic L1MD2|LINE|L1 -32220 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 906-32 chr9 111540524 111541066 + 4 NA intron (NM_001007169, intron 5 of 5) MIR|SINE|MIR 15616 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 565-97 chr20 34219059 34219371 + 4 NA Intergenic Intergenic -41150 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 480-224 chr4 158346726 158346849 + 4 NA Intergenic Intergenic 136301 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 985-5 chr1 227643008 227643490 + 4 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 54458 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 810-9 chr12 73623809 73624264 + 4 NA Intergenic Intergenic 464846 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 919-20 chr6 145508380 145508740 + 4 NA Intergenic L1PA15-16|LINE|L1 178317 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 640-36 chr14 72215942 72216265 + 4 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 282576 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 904-32 chr5 32800430 32800788 + 4 NA Intergenic L1PA7|LINE|L1 89288 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 1244-6 chr4 102859676 102860291 + 4 NA intron (NM_181890, intron 1 of 7) AluY|SINE|Alu 8910 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 522-249 chr8 87568414 87568691 + 4 NA Intergenic Intergenic 305463 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 717-41 chr2 59844533 59844839 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 538350 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 602-69 chr2 172577559 172577790 + 4 NA intron (NM_002610, intron 8 of 10) L1MB7|LINE|L1 21584 NM_002610 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 694-136 chrX 89042704 89042958 + 4 NA Intergenic L1M1|LINE|L1 295606 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 1852 chr1 159461767 159462791 + 4 NA Intergenic L1MDa|LINE|L1 22557 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 3312 chr12 5353401 5354979 + 4 NA Intergenic L1MB7|LINE|L1 -77918 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 1136-9 chr7 10061334 10061968 + 4 NA Intergenic Intergenic 427381 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 607-12 chr1 182132021 182132255 + 4 NA Intergenic Intergenic -70426 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 866-9 chr10 78106650 78107196 + 4 NA Intergenic LTR78B|LTR|ERV1 73060 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 676-125 chrX 58046954 58047245 + 4 NA Intergenic HERVL-int|LTR|ERVL -136466 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 880-46 chr8 90294325 90294749 + 4 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 73049 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 1034-2 chr1 18305966 18306247 + 4 NA intron (NM_032880, intron 3 of 9) L2a|LINE|L2 -174824 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 204-103 chr15 68883381 68883466 + 4 NA Intergenic L1ME3G|LINE|L1 -47077 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 620-97 chr4 30904614 30904993 + 4 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 184434 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 523-160 chr21 15477341 15477488 + 4 NA Intergenic L1ME1|LINE|L1 -252520 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 771-74 chr5 152502065 152502432 + 4 NA Intergenic Intergenic -96969 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 480-174 chr20 55215122 55215305 + 4 NA Intergenic Intergenic -207830 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 963-32 chr8 110320956 110321452 + 4 NA Intergenic Intergenic -345433 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 623-108 chr5 74535246 74535509 + 4 NA intron (NR_126354, intron 1 of 2) intron (NR_126354, intron 1 of 2) 1599 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 768-17 chr13 85485456 85485711 + 4 NA intron (NR_046989, intron 1 of 3) intron (NR_046989, intron 1 of 3) 121980 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 975-23 chr8 122103926 122104325 + 4 NA Intergenic AluSx1|SINE|Alu -462685 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 1065-4 chr11 79662514 79663105 + 4 NA Intergenic Intergenic -221779 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 511-128 chr2 125634103 125634407 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 483730 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 794-54 chrX 65942846 65943124 + 4 NA Intergenic L1PA15|LINE|L1 -75885 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 556-87 chr18 12798540 12798775 + 4 NA intron (NM_080422, intron 8 of 9) L1PA13|LINE|L1 42305 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 695-90 chr6 18678692 18679015 + 4 NA intron (NR_149116, intron 6 of 7) MamGypsy2-LTR|LTR|Gypsy 107069 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 910-40 chr8 103561332 103561703 + 4 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -59607 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 766-28 chr18 13156723 13157044 + 4 NA Intergenic L1MA4|LINE|L1 -61877 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 588-96 chr3 41470616 41470879 + 4 NA intron (NR_136342, intron 30 of 34) L1MA7|LINE|L1 271242 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 532-224 chr6 66595129 66595298 + 4 NA Intergenic (ATTATA)n|Simple_repeat|Simple_repeat 807334 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 592-3 chr1 87605082 87605265 + 4 NA Intergenic L1MA8|LINE|L1 -233518 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 929-8 chr12 33352424 33352867 + 4 NA Intergenic Intergenic 87174 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 965-18 chr5 179045342 179045811 + 4 NA Intergenic (ATAAT)n|Simple_repeat|Simple_repeat -14797 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 650-124 chr8 77536226 77536408 + 4 NA Intergenic Intergenic 85620 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 360-290 chr3 11145875 11145997 + 4 NA intron (NM_001098213, intron 1 of 1) L1ME3|LINE|L1 -8557 NM_001098212 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 830-40 chr4 116397762 116398103 + 4 NA Intergenic Intergenic 98207 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 1361-7 chr9 96788934 96789626 + 4 NA Intergenic Intergenic -11151 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 616-164 chr7 112359992 112360286 + 4 NA Intergenic L1M3|LINE|L1 -63005 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 377-369 chr7 43356874 43357058 + 4 NA intron (NM_001287059, intron 4 of 27) L1MA4|LINE|L1 165576 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 512-275 chr8 102132505 102132711 + 4 NA Intergenic L1MB8|LINE|L1 7176 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 580-68 chr18 47188080 47188243 + 4 NA Intergenic Intergenic -11797 NM_016097 51124 Hs.130917 NM_016097 ENSG00000134049 IER3IP1 HSPC039|MEDS|PRO2309 immediate early response 3 interacting protein 1 protein-coding 614-119 chr7 56457905 56458219 + 4 NA Intergenic L1MC4a|LINE|L1 -9687 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 1418-3 chr7 7318298 7318903 + 4 NA Intergenic Intergenic 63446 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 328-283 chr2 145067766 145067869 + 4 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 399850 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 487-99 chr15 88353243 88353421 + 4 NA Intergenic HAL1|LINE|L1 -96593 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 724-44 chr20 43808062 43808390 + 4 NA Intergenic L1MB7|LINE|L1 -81224 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 812-30 chr2 68207487 68207797 + 4 NA intron (NM_000945, intron 2 of 5) MamRep1527|LTR|LTR 44890 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 534-23 chr10 22450097 22450258 + 4 NA Intergenic L1ME3A|LINE|L1 -12248 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 680-37 chr14 56578024 56578296 + 4 NA Intergenic MLT1F2|LTR|ERVL-MaLR -1638 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 516-113 chr19 56544764 56544919 + 4 NA intron (NM_001308440, intron 2 of 6) intron (NM_001308440, intron 2 of 6) 5893 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 1036-25 chr8 82184609 82185107 + 4 NA Intergenic Intergenic -342572 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 637-62 chr2 67295336 67295516 + 4 NA Intergenic Intergenic -80107 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 608-11 chr10 65199591 65199814 + 4 NA Intergenic Intergenic -275184 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 604-101 chr22 24904945 24905183 + 4 NA intron (NM_001098498, intron 19 of 23) intron (NM_001098498, intron 19 of 23) 41631 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 639-30 chr12 118651313 118651579 + 4 NA Intergenic MLT1G1|LTR|ERVL-MaLR 110233 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 615-58 chr2 18036929 18037234 + 4 NA Intergenic Intergenic 158414 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 1392-4 chr8 54791430 54792081 + 4 NA Intergenic L1M3b|LINE|L1 175659 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 426-184 chr3 86223292 86223414 + 4 NA Intergenic MIRb|SINE|MIR -258590 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 570-138 chr3 88275666 88275834 + 4 NA Intergenic Intergenic -62706 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 949-8 chr18 71964659 71965211 + 4 NA Intergenic L1MCa|LINE|L1 -182709 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 1292-4 chr5 57344647 57345267 + 4 NA Intergenic L2c|LINE|L2 130883 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 993-14 chr3 120924222 120924745 + 4 NA intron (NR_145517, intron 2 of 8) intron (NR_145517, intron 2 of 8) 15806 NM_001348343 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 238-50 chr10 101553683 101553774 + 4 NA 3' UTR (NM_033637, exon 15 of 15) 3' UTR (NM_033637, exon 15 of 15) 34529 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 702-51 chr2 209376401 209376679 + 4 NA Intergenic Intergenic -47507 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 794-2 chr1 49540339 49540710 + 4 NA intron (NR_136623, intron 2 of 12) L2b|LINE|L2 -68439 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 635-6 chr1 115619447 115619697 + 4 NA Intergenic L1MCc|LINE|L1 -22398 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 1539-2 chr3 78420639 78421168 + 4 NA Intergenic Intergenic -371940 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 778-52 chr4 155489896 155490237 + 4 NA Intergenic L2a|LINE|L2 -113101 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 481-322 chrX 64973381 64973693 + 4 NA intron (NM_001178032, intron 1 of 4) L1MDa|LINE|L1 2913 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 1099-7 chr14 59647185 59647757 + 4 NA promoter-TSS (NR_049851) promoter-TSS (NR_049851) -451 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 688-100 chr7 64204162 64204527 + 4 NA Intergenic MER41-int|LTR|ERV1 -2859 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 990-6 chr14 63057648 63058080 + 4 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -12406 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 818-28 chr2 237489657 237490048 + 4 NA intron (NM_024101, intron 1 of 15) intron (NM_024101, intron 1 of 15) 2601 NM_024101 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 847-35 chr4 170877174 170877495 + 4 NA Intergenic Intergenic -133599 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 610-26 chr11 27120763 27120969 + 4 NA intron (NM_003986, intron 7 of 8) L2a|LINE|L2 80051 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 954-18 chr19 8809939 8810414 + 4 NA 3' UTR (NM_144693, exon 10 of 10) 3' UTR (NM_144693, exon 10 of 10) 11887 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 625-52 chr2 121677848 121678138 + 4 NA intron (NR_037857, intron 2 of 3) L1PBa|LINE|L1 28004 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 891-26 chr5 8276343 8276783 + 4 NA Intergenic Intergenic 181001 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 545-237 chr8 88601660 88602024 + 4 NA Intergenic L2c|LINE|L2 -274359 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 700-38 chr18 2156963 2157167 + 4 NA Intergenic Intergenic 414440 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 853-26 chr4 126113026 126113371 + 4 NA Intergenic L1MC3|LINE|L1 605939 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 1018-9 chr14 25462309 25462754 + 4 NA Intergenic L1ME4a|LINE|L1 -412234 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 1129-12 chr21 34663278 34663986 + 4 NA Intergenic L1MA4A|LINE|L1 -5362 NM_001317009 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 1037-15 chr7 106635331 106635775 + 4 NA Intergenic Cheshire|DNA|hAT-Charlie 25605 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 1060-18 chr5 133375777 133376344 + 4 NA intron (NM_015082, intron 4 of 15) L1ME3B|LINE|L1 51646 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 672-27 chr14 64358077 64358251 + 4 NA Intergenic L1MC5a|LINE|L1 -10553 NR_033777 441687 Hs.685242 NR_033777 TEX21P - testis expressed 21, pseudogene pseudo 623-112 chr6 376528 376844 + 4 NA Intergenic L1MA8|LINE|L1 -15066 NM_002460 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 566-9 chr10 16725908 16726165 + 4 NA intron (NM_152724, intron 6 of 7) (TA)n|Simple_repeat|Simple_repeat 91388 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 1194-8 chr8 46319920 46320320 + 4 NA Intergenic ALR/Alpha|Satellite|centr 297523 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 814-33 chr2 43555467 43555854 + 4 NA TTS (NM_001271644) TTS (NM_001271644) 40314 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 551-11 chr1 180380397 180380567 + 4 NA intron (NM_032360, intron 6 of 7) L1MA4A|LINE|L1 57908 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 480-64 chr13 107352633 107352892 + 4 NA intron (NM_001080396, intron 1 of 2) LTR48|LTR|ERV1 -31799 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 990-7 chr14 83920710 83921072 + 4 NA Intergenic L1MA8|LINE|L1 1278259 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 787-42 chr6 88582886 88583159 + 4 NA Intergenic L1MD2|LINE|L1 -43653 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 728-11 chr10 69994253 69994604 + 4 NA Intergenic Intergenic -58418 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 1126-5 chr19 52091365 52091789 + 4 NA intron (NM_001352298, intron 1 of 5) L1MA9|LINE|L1 2694 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 752-50 chr3 6088672 6088959 + 4 NA Intergenic Intergenic 716634 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 359-102 chr11 115875728 115875916 + 4 NA Intergenic L1ME3A|LINE|L1 -115622 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 568-50 chr14 57984853 57985055 + 4 NA Intergenic Intergenic -118862 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 1531-3 chr3 123827581 123828536 + 4 NA intron (NM_001321309, intron 3 of 32) L1MA5A|LINE|L1 56274 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 666-53 chr2 64689634 64689941 + 4 NA Intergenic Intergenic -35874 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 1177-6 chr5 141238925 141239649 + 4 NA promoter-TSS (NR_001282) promoter-TSS (NR_001282) -834 NR_001282 84054 Hs.570898 NR_001282 PCDHB19P PCDH-PSI5|PCDHB19 protocadherin beta 19 pseudogene pseudo 620-40 chr14 72166985 72167196 + 4 NA intron (NM_001370288, intron 2 of 16) MLT1F2|LTR|ERVL-MaLR 233563 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 659-41 chr17 62983728 62983918 + 4 NA intron (NM_025185, intron 1 of 25) L1M2c|LINE|L1 17588 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 841-4 chr11 58605543 58605891 + 4 NA intron (NM_001197051, intron 2 of 10) L1MB5|LINE|L1 -16948 NM_000614 1270 Hs.524920 NM_000614 ENSG00000242689 CNTF HCNTF ciliary neurotrophic factor protein-coding 762-70 chr8 82110909 82111117 + 4 NA Intergenic Intergenic -268727 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 387-263 chr4 163411423 163411573 + 4 NA Intergenic Intergenic 62256 NM_032136 84076 Hs.303923 NM_032136 ENSG00000151005 TKTL2 - transketolase like 2 protein-coding 1199-6 chr2 22146523 22147283 + 4 NA Intergenic L1PB4|LINE|L1 -389576 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 733 chr1 5680978 5681227 + 4 NA Intergenic Intergenic 181639 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 1273-6 chr2 156871439 156872031 + 4 NA Intergenic Intergenic -385970 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 857-43 chr5 2484680 2485138 + 4 NA Intergenic L1M4|LINE|L1 -172708 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 670-44 chr17 33366816 33367064 + 4 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -73952 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 726-42 chr2 79351558 79351896 + 4 NA Intergenic L1PA16|LINE|L1 149117 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 1160-3 chr19 9230307 9230941 + 4 NA Intergenic Intergenic -15753 NM_001005191 125958 Hs.446910 NM_001005191 ENSG00000174667 OR7D4 OR19-7|OR19-B|OR19B|OR7D4P|hg105 olfactory receptor family 7 subfamily D member 4 protein-coding 552-216 chr8 122960760 122961028 + 4 NA intron (NM_001362797, intron 4 of 4) intron (NM_001362797, intron 4 of 4) 64878 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 448-211 chr5 45010630 45010812 + 4 NA Intergenic L1M3|LINE|L1 201774 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 1249-6 chr3 175675261 175675944 + 4 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 100731 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 524-30 chr10 57143656 57143856 + 4 NA Intergenic Intergenic 160803 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 738-26 chr16 48251061 48251341 + 4 NA intron (NM_031490, intron 1 of 14) intron (NM_031490, intron 1 of 14) -3662 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 1345-8 chr8 135123527 135124121 + 4 NA Intergenic LTR16A2|LTR|ERVL -110307 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 592-96 chr20 33950156 33950406 + 4 NA Intergenic FLAM_C|SINE|Alu -43630 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 600-48 chr17 61657917 61658203 + 4 NA Intergenic L1M4|LINE|L1 -66841 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 665-18 chr11 91889958 91890169 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR -334971 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1607-2 chr4 30331214 30332111 + 4 NA Intergenic LTR27E|LTR|ERV1 -388707 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 728-87 chr7 19386833 19387129 + 4 NA Intergenic L1MA9|LINE|L1 -241560 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 423-155 chr20 55083591 55083819 + 4 NA Intergenic Intergenic -339338 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 579-152 chr7 18254555 18254786 + 4 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -35422 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 1388-5 chr8 59901224 59902041 + 4 NA Intergenic L1PA11|LINE|L1 379768 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 620-14 chr10 52596444 52596703 + 4 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -126040 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 1486 chr1 247267113 247267684 + 4 NA Intergenic L1M1|LINE|L1 11326 NR_160309 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 830-41 chr4 120409315 120409742 + 4 NA Intergenic L1MA1|LINE|L1 -342680 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 479-187 chr5 17978965 17979168 + 4 NA Intergenic Intergenic 171792 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 674-102 chr8 77128538 77128859 + 4 NA Intergenic Intergenic -127654 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 494-3 chr1 34935098 34935335 + 4 NA Intergenic L1M5|LINE|L1 -5566 NM_001080418 58512 Hs.436393 NM_001080418 ENSG00000116544 DLGAP3 DAP3|SAPAP3 DLG associated protein 3 protein-coding 2920 chr19 36818872 36820236 + 4 NA exon (NM_001242802, exon 5 of 5) exon (NM_001242802, exon 5 of 5) 18473 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 1099-2 chr1 186744109 186744522 + 4 NA Intergenic Intergenic 63661 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 372-427 chr6 44111012 44111151 + 4 NA Intergenic MIRc|SINE|MIR 15186 NM_001318770 64928 Hs.311190 NM_032111 ENSG00000180992 MRPL14 L14mt|L32mt|MRP-L14|MRP-L32|MRPL32|RMPL32|RPML32 mitochondrial ribosomal protein L14 protein-coding 939-9 chr11 69608696 69609172 + 4 NA Intergenic L1M4a1|LINE|L1 -32171 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 654-20 chr10 67484475 67484793 + 4 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -81224 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 736-92 chr8 139978354 139978741 + 4 NA intron (NM_001160372, intron 19 of 22) L1MC5|LINE|L1 121988 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1167-9 chr17 71841944 71842510 + 4 NA Intergenic Intergenic 183752 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 894-32 chr5 28293272 28293546 + 4 NA Intergenic Intergenic -5744 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 612-127 chr7 25882696 25883006 + 4 NA Intergenic Intergenic 67135 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 625-120 chr8 129815419 129815720 + 4 NA Intergenic L1PA16|LINE|L1 -28945 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 647-29 chr14 66349441 66349727 + 4 NA Intergenic L1MB1|LINE|L1 -136787 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 539-86 chr16 59843911 59844170 + 4 NA Intergenic L1M4b|LINE|L1 -11313 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 714-47 chr3 16108012 16108280 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -66534 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 768-23 chr16 56012785 56013022 + 4 NA Intergenic Intergenic -56872 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 430-59 chr12 9918835 9918949 + 4 NA intron (NM_207375, intron 3 of 4) L1PA12|LINE|L1 13478 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 386-351 chr8 85340538 85340682 + 4 NA intron (NM_001738, intron 3 of 8) Tigger1|DNA|TcMar-Tigger 1104 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 650-118 chr7 50544715 50544983 + 4 NA intron (NM_001082971, intron 1 of 14) Tigger17a|DNA|TcMar-Tigger 13090 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 650-137 chrX 45661112 45661326 + 4 NA Intergenic L1PA13|LINE|L1 -69869 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 606-120 chr4 75034383 75034667 + 4 NA intron (NM_015393, intron 3 of 3) Charlie18a|DNA|hAT-Charlie 50183 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 747-25 chr17 52658522 52658882 + 4 NA Intergenic Intergenic -203419 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 608-4 chr1 69106767 69107009 + 4 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 50990 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 643-16 chr11 81872384 81872572 + 4 NA Intergenic MIRc|SINE|MIR 18358 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 812-41 chr5 125253829 125254211 + 4 NA intron (NR_109882, intron 4 of 5) THE1B-int|LTR|ERVL-MaLR 217189 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 815-47 chr9 79788405 79788724 + 4 NA Intergenic MER89|LTR|ERV1 -35966 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1095-5 chr2 124057771 124058259 + 4 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 32728 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 688-98 chr6 132066674 132066967 + 4 NA Intergenic Intergenic 48443 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 924-8 chr1 236958375 236958891 + 4 NA Intergenic Intergenic 45808 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 730-47 chr3 107760353 107760543 + 4 NA intron (NM_001276286, intron 10 of 16) intron (NM_001276286, intron 10 of 16) 117620 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 1001-3 chr10 36549708 36550174 + 4 NA Intergenic Intergenic -575916 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 714-76 chr8 128244497 128244778 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 94521 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 982-23 chr6 65519771 65520147 + 4 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 59845 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 615-46 chr15 57934868 57935104 + 4 NA Intergenic L1PA14|LINE|L1 79037 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 250-395 chr7 32112441 32112521 + 4 NA intron (NM_001322059, intron 3 of 17) AluJr4|SINE|Alu -41045 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1316-2 chr21 44642119 44642473 + 4 NA intron (NM_144991, intron 1 of 11) L1M4|LINE|L1 -4118 NM_198692 386678 Hs.58076 NM_198692 ENSG00000243489 KRTAP10-11 KAP10.11|KAP10.9|KAP18-9|KAP18.11|KRTAP10-9|KRTAP10.9|KRTAP18-11|KRTAP18-9|KRTAP18.11|KRTAP18.9 keratin associated protein 10-11 protein-coding 809-14 chr16 84035719 84036096 + 4 NA intron (NM_001080442, intron 2 of 9) L1M4a2|LINE|L1 6250 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 586-97 chr3 22939579 22939815 + 4 NA Intergenic Intergenic 262881 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 349-104 chr11 100256318 100256452 + 4 NA intron (NM_001243270, intron 16 of 23) L1MC4a|LINE|L1 -430903 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 1037-2 chr10 90420899 90421409 + 4 NA intron (NR_110657, intron 3 of 6) L2b|LINE|L2 119651 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 1620 chr6 45244339 45245205 + 4 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -47002 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 724-7 chr11 22036161 22036411 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -156799 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 770-57 chr4 98053648 98054017 + 4 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 89644 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 662-13 chr10 97952649 97953018 + 4 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) -76936 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 766-24 chr17 72417629 72418032 + 4 NA intron (NR_036488, intron 3 of 3) intron (NR_036488, intron 3 of 3) 75019 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 730-44 chr22 48711237 48711506 + 4 NA intron (NM_001082967, intron 3 of 3) intron (NM_001082967, intron 3 of 3) -68924 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 420-309 chr9 87818829 87819002 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -25830 NR_033405 1518 Hs.726015 NR_033405 CTSLP8 CTSL1P8 cathepsin L pseudogene 8 pseudo 961-24 chr8 136341532 136341988 + 4 NA Intergenic L1ME2|LINE|L1 -189038 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 806-25 chr17 65799603 65799945 + 4 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 26677 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 677-77 chr7 64524944 64525204 + 4 NA 3' UTR (NM_001130022, exon 4 of 4) 3' UTR (NM_001130022, exon 4 of 4) 37997 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 572-44 chr12 84078308 84078506 + 4 NA Intergenic Intergenic 834392 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 616-151 chr7 4388094 4388423 + 4 NA Intergenic MER72B|LTR|ERV1 -253421 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 924-24 chr2 50056910 50057297 + 4 NA intron (NM_001330093, intron 19 of 22) L2c|LINE|L2 -82900 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 615-66 chr2 114438175 114438444 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -4332 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 486-238 chr5 29001390 29001650 + 4 NA Intergenic Intergenic -63724 NR_109948 101929645 Hs.531878 NR_109948 LOC101929645 - uncharacterized LOC101929645 ncRNA 746-84 chr8 103529951 103530198 + 4 NA intron (NM_001348497, intron 1 of 22) L1MEg|LINE|L1 -28164 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 1153-17 chr8 138379415 138379943 + 4 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 117582 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 678-13 chr11 41641322 41641544 + 4 NA Intergenic L1PA15|LINE|L1 -73135 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 577-80 chr18 42899930 42900139 + 4 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 215651 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 784-18 chr14 61113484 61113893 + 4 NA Intergenic Intergenic -131998 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 570-31 chr10 99247304 99247553 + 4 NA Intergenic L1PA16|LINE|L1 -11553 NM_021828 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 507-262 chr8 129238639 129238902 + 4 NA intron (NR_033916, intron 1 of 2) LTR78|LTR|ERV1 2470 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 946-9 chr19 52070793 52071208 + 4 NA intron (NM_001369830, intron 2 of 2) intron (NM_001369830, intron 2 of 2) -22162 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 803-54 chr7 69468595 69469015 + 4 NA Intergenic Intergenic 128819 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 832-4 chr11 20825874 20826201 + 4 NA intron (NM_001288714, intron 3 of 18) THE1C|LTR|ERVL-MaLR 156451 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 610-128 chr4 123369503 123369660 + 4 NA Intergenic L1ME4b|LINE|L1 -27214 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 404-10 chr1 80467626 80467822 + 4 NA Intergenic L1ME3A|LINE|L1 -68031 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 732-15 chr10 118288359 118288667 + 4 NA Intergenic Intergenic 53811 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 952-25 chr7 71547414 71547793 + 4 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -239833 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 695-71 chr4 83122560 83122785 + 4 NA Intergenic L1MC4a|LINE|L1 -7943 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 613-143 chr9 13922422 13922670 + 4 NA Intergenic Intergenic -5425 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 954 chr1 247056901 247057463 + 4 NA intron (NM_033213, intron 1 of 3) L1MA3|LINE|L1 21629 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 651-62 chr2 57014171 57014405 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -828518 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 827-7 chr11 50486789 50487091 + 4 NA Intergenic ALR/Alpha|Satellite|centr 77793 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 554-122 chr2 136617011 136617275 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -148402 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 591-65 chr2 15111622 15111865 + 4 NA Intergenic HAL1M8|LINE|L1 449591 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 682-106 chr8 127182150 127182452 + 4 NA Intergenic Intergenic 15326 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 764-33 chr19 27729474 27729815 + 4 NA Intergenic ALR/Alpha|Satellite|centr -63787 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 687-96 chr5 123922363 123922695 + 4 NA Intergenic L1MEf|LINE|L1 377112 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 754-34 chr18 64665272 64665637 + 4 NA Intergenic Intergenic -405399 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 909-9 chr14 68094707 68095126 + 4 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 271324 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 619-51 chr14 88860596 88860827 + 4 NA intron (NR_159362, intron 9 of 14) L2a|LINE|L2 36060 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 532-202 chr5 35370947 35371155 + 4 NA Intergenic Intergenic -140564 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 709-43 chr2 126620372 126620692 + 4 NA Intergenic Intergenic -35403 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 582-40 chr14 82278685 82278870 + 4 NA Intergenic Intergenic -363855 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 441-48 chr11 134733323 134733531 + 4 NA Intergenic MER39|LTR|ERV1 -2518 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 635-60 chr20 46454921 46455116 + 4 NA Intergenic L1ME3D|LINE|L1 2625 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 613-93 chr4 41544937 41545123 + 4 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) 6873 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 256-460 chrM 2213 2301 + 4 NA TTS (NR_137294) TTS (NR_137294) 586 NR_137295 990-20 chr5 14515749 14516022 + 4 NA Intergenic L1MD1|LINE|L1 51902 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 650-78 chr3 60459252 60459526 + 4 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 158481 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 1346 chr1 175714873 175715526 + 4 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 28396 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 706-76 chr9 82471603 82471994 + 4 NA Intergenic L1MB3|LINE|L1 483026 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 600-27 chr12 47192258 47192449 + 4 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) 4541 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 563-115 chr22 39798105 39798415 + 4 NA intron (NM_152512, intron 5 of 6) L1M2|LINE|L1 95500 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 846-20 chr19 56420745 56421056 + 4 NA intron (NM_001159860, intron 4 of 4) L1ME2|LINE|L1 16568 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 1402 chr13 31815154 31815748 + 4 NA Intergenic L1M4c|LINE|L1 -31332 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 1092-14 chr5 38305352 38305718 + 4 NA intron (NM_152403, intron 1 of 21) HAL1|LINE|L1 -14549 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 966-24 chr6 85902020 85902346 + 4 NA Intergenic LTR16E1|LTR|ERVL -223450 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 935-41 chr8 135203299 135203661 + 4 NA Intergenic Intergenic -30651 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 673-48 chr19 36509439 36509725 + 4 NA Intergenic AluSz|SINE|Alu 18689 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 450-139 chr2 68788235 68788409 + 4 NA intron (NM_014882, intron 3 of 9) MIR3|SINE|MIR 13412 NM_001166276 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 1145-9 chr5 44310728 44311334 + 4 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -77701 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 745-44 chr4 38609253 38609583 + 4 NA Intergenic Intergenic 45415 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 821-17 chr15 87106508 87106956 + 4 NA Intergenic L1MA4A|LINE|L1 -118306 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 995-20 chr8 142849573 142850101 + 4 NA Intergenic L1M4|LINE|L1 15036 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 500-183 chr3 72587769 72587928 + 4 NA Intergenic LTR16A|LTR|ERVL 76401 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 1467-5 chr15 67684717 67685449 + 4 NA intron (NM_001206804, intron 13 of 21) L1MEc|LINE|L1 135989 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 416-180 chr2 111252218 111252522 + 4 NA intron (NR_136165, intron 2 of 3) intron (NR_136165, intron 2 of 3) 68716 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 1492-4 chr2 158430639 158431460 + 4 NA intron (NM_138803, intron 1 of 13) L1MEc|LINE|L1 25704 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 374-142 chr17 34000734 34000922 + 4 NA intron (NM_001094, intron 1 of 9) L1M3c|LINE|L1 155978 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 592-108 chr3 27206025 27206281 + 4 NA intron (NM_152534, intron 24 of 38) MLT1A0|LTR|ERVL-MaLR 10370 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 1002 chr1 113504552 113504895 + 4 NA intron (NM_001142782, intron 1 of 20) L1ME3Cz|LINE|L1 114208 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 704-15 chr11 121073169 121073504 + 4 NA intron (NM_001363644, intron 8 of 8) L1M5|LINE|L1 -29330 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 513-224 chr5 51190086 51190222 + 4 NA Intergenic Intergenic 193178 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 490-17 chr1 107859463 107859665 + 4 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -37659 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 630-119 chr6 99957723 99957926 + 4 NA intron (NM_032503, intron 1 of 5) L1MB1|LINE|L1 -36214 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 1011-18 chr8 137469532 137469956 + 4 NA Intergenic L1MEg2|LINE|L1 -56156 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 461-216 chr5 85142910 85143109 + 4 NA Intergenic LTR41C|LTR|ERVL -758129 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 592-115 chr3 116158343 116158518 + 4 NA intron (NM_001318915, intron 1 of 8) L1PA15|LINE|L1 -201594 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 643-11 chr10 32422273 32422507 + 4 NA Intergenic L1MEc|LINE|L1 23666 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 670-19 chr11 14039913 14040141 + 4 NA intron (NM_006108, intron 2 of 15) L1ME5|LINE|L1 77304 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 836-55 chr7 7284343 7284804 + 4 NA Intergenic L1MA9|LINE|L1 29419 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 779-33 chr2 136586361 136586635 + 4 NA Intergenic Intergenic -179047 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 807-15 chr14 40013459 40013841 + 4 NA Intergenic Intergenic -581150 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 1027-4 chr13 61118317 61118702 + 4 NA Intergenic MER41B|LTR|ERV1 81371 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 1213-4 chr14 72146390 72146926 + 4 NA intron (NM_001370288, intron 2 of 16) MSTD-int|LTR|ERVL-MaLR 213131 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 900-23 chr20 19168149 19168549 + 4 NA Intergenic L1MEd|LINE|L1 -44293 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 1016-8 chr2 56576634 56577023 + 4 NA Intergenic L1M2|LINE|L1 -391058 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 508-245 chr8 126798954 126799156 + 4 NA Intergenic Intergenic -214099 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 581-25 chr11 43975206 43975472 + 4 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 32702 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 763-42 chr3 74391838 74392294 + 4 NA intron (NM_020872, intron 4 of 21) intron (NM_020872, intron 4 of 21) 129074 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 742-51 chr3 28750012 28750361 + 4 NA intron (NR_038840, intron 2 of 4) MER3|DNA|hAT-Charlie 174908 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 584-96 chr3 26331960 26332152 + 4 NA Intergenic L1PA17|LINE|L1 -290750 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 406-169 chr20 48245867 48246086 + 4 NA Intergenic L2|LINE|L2 -113935 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 281-133 chr15 39219517 39219685 + 4 NA Intergenic L1MEf|LINE|L1 -31068 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 786-5 chr1 227380888 227381266 + 4 NA Intergenic L1MC1|LINE|L1 -62585 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 759-38 chr2 122821646 122822011 + 4 NA Intergenic Intergenic 251653 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 835-29 chr2 115089203 115089506 + 4 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 24781 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 677-37 chr16 80398248 80398484 + 4 NA intron (NR_120307, intron 2 of 5) L1MA2|LINE|L1 -142368 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 595-173 chr9 96746242 96746445 + 4 NA Intergenic L1MEf|LINE|L1 20522 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 792-53 chr6 45269111 45269476 + 4 NA intron (NM_001350325, intron 2 of 10) MER103C|DNA|hAT-Charlie -59024 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 788-37 chr3 138176591 138176893 + 4 NA Intergenic L1MEg|LINE|L1 -1821 NM_016216 51163 Hs.477700 NM_016216 ENSG00000138231 DBR1 - debranching RNA lariats 1 protein-coding 636-164 chr9 119705893 119706066 + 4 NA Intergenic L2b|LINE|L2 -229081 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 514-7 chr1 90866658 90866922 + 4 NA Intergenic L1M5|LINE|L1 15031 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 677-49 chr20 22056084 22056361 + 4 NA intron (NR_038394, intron 1 of 3) intron (NR_038394, intron 1 of 3) 2132 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 625-123 chr8 136451680 136451991 + 4 NA Intergenic Intergenic -78963 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 594-36 chr12 45012908 45013168 + 4 NA Intergenic Intergenic 38061 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 499-63 chr13 55779237 55779402 + 4 NA Intergenic L1MA4A|LINE|L1 604865 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 688-13 chr10 31050057 31050333 + 4 NA Intergenic Intergenic -18258 NM_001143768 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 484-28 chr10 44064692 44064924 + 4 NA Intergenic Intergenic 152406 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 455-58 chr12 40525862 40526045 + 4 NA intron (NM_173600, intron 108 of 173) intron (NM_173600, intron 108 of 173) 132559 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 709-55 chr3 107607501 107607812 + 4 NA intron (NM_001276286, intron 2 of 16) L1MA3|LINE|L1 84694 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 765-26 chr19 37420379 37420756 + 4 NA intron (NM_001330482, intron 4 of 4) Tigger1|DNA|TcMar-Tigger 46877 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 673-115 chr8 36512246 36512445 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -272029 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 633-100 chr5 133647995 133648282 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -35597 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 1139-4 chr16 31843231 31843778 + 4 NA Intergenic L1MA8|LINE|L1 -30254 NR_049749 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 535-132 chr2 125387514 125387738 + 4 NA Intergenic HAL1|LINE|L1 730359 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 725-13 chr11 12298387 12298666 + 4 NA intron (NM_032867, intron 3 of 8) L1ME4b|LINE|L1 11626 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 446-163 chr20 6514850 6515055 + 4 NA intron (NR_109953, intron 3 of 3) intron (NR_109953, intron 3 of 3) 88220 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 753-8 chr10 34019497 34019876 + 4 NA Intergenic Intergenic -247006 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 634-117 chr4 97338220 97338418 + 4 NA Intergenic L1PA10|LINE|L1 -28607 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 731-61 chr6 66265426 66265698 + 4 NA Intergenic L1MEg2|LINE|L1 477683 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 1460-3 chr5 124459287 124460014 + 4 NA Intergenic Intergenic -21130 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 728-80 chr6 45233935 45234209 + 4 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -36302 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 577-178 chr7 20480062 20480315 + 4 NA Intergenic MLT2B4|LTR|ERVL -135479 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 799-7 chr10 65129488 65129702 + 4 NA Intergenic Intergenic -205077 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 794-43 chr8 89246660 89247080 + 4 NA Intergenic L1MA4A|LINE|L1 510841 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 862-29 chr6 52097012 52097347 + 4 NA Intergenic Intergenic -9566 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 684-107 chr5 180445364 180445678 + 4 NA Intergenic Intergenic -48858 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 519-120 chr2 157956193 157956351 + 4 NA Intergenic L1MB7|LINE|L1 -38907 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 681-49 chr3 106844184 106844500 + 4 NA Intergenic L2c|LINE|L2 396296 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 748-66 chr4 97443211 97443467 + 4 NA intron (NR_102713, intron 3 of 5) intron (NR_102713, intron 3 of 5) 76413 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 384-107 chr14 45285610 45285774 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -32490 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 376-291 chr4 100143475 100143635 + 4 NA Intergenic (ATAA)n|Simple_repeat|Simple_repeat -46478 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 450-89 chr14 78926678 78926891 + 4 NA intron (NM_004796, intron 7 of 16) (TA)n|Simple_repeat|Simple_repeat -273198 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 1098-11 chr9 102297290 102297664 + 4 NA Intergenic L3b|LINE|CR1 -222160 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 658-17 chr10 65265907 65266188 + 4 NA Intergenic L1ME1|LINE|L1 -305378 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 774-16 chr11 128088767 128089156 + 4 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -119805 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 496-302 chr8 144984873 144985069 + 4 NA intron (NR_023392, intron 4 of 4) L1M4b|LINE|L1 -9894 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 1947-5 chr5 134327987 134328875 + 4 NA intron (NM_001349366, intron 1 of 8) L1MB8|LINE|L1 38643 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 1317-7 chr5 159682739 159683405 + 4 NA Intergenic L1MA1|LINE|L1 188312 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 738-39 chr21 33256935 33257246 + 4 NA intron (NM_001289128, intron 7 of 7) LTR16A1|LTR|ERVL 9170 NR_038974 100288432 Hs.709795 NR_038974 IL10RB-DT IFNAR2-AS1|IL10RB-AS1 IL10RB divergent transcript ncRNA 937-22 chr3 189062859 189063412 + 4 NA Intergenic L1MD1|LINE|L1 -108836 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 300-163 chr18 4936846 4936983 + 4 NA Intergenic L1MEc|LINE|L1 -144268 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1313-5 chr21 30949829 30950364 + 4 NA Intergenic L1M4|LINE|L1 -68516 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 838-18 chr2 8209956 8210314 + 4 NA intron (NR_152741, intron 9 of 9) L1MDa|LINE|L1 118284 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 444-233 chr7 11618905 11619069 + 4 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 213211 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 742-62 chr5 2829574 2829809 + 4 NA Intergenic Intergenic 77560 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 893-31 chr3 77300252 77300595 + 4 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 202411 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 738-40 chr3 2529869 2530180 + 4 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 291195 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 1110-6 chr15 36272057 36272406 + 4 NA Intergenic Intergenic -307395 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 954-37 chr4 83612022 83612415 + 4 NA Intergenic L1MA5|LINE|L1 76110 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 758-20 chr13 89982754 89983166 + 4 NA Intergenic LTR78|LTR|ERV1 136757 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 445-239 chr6 105541937 105542179 + 4 NA Intergenic Intergenic -138976 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 986-19 chr2 107185341 107185711 + 4 NA intron (NR_049853, intron 2 of 3) L1MCa|LINE|L1 163999 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 516-129 chr2 108011901 108012100 + 4 NA 3' UTR (NM_001305007, exon 9 of 9) 3' UTR (NM_001305007, exon 9 of 9) 25476 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 815-39 chr8 25018555 25018786 + 4 NA Intergenic Intergenic -61801 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 1069-5 chr12 126890826 126891429 + 4 NA Intergenic Intergenic -16437 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 515-89 chr17 69375013 69375260 + 4 NA Intergenic Intergenic -39561 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 605-93 chr5 97340778 97341023 + 4 NA Intergenic L1M1|LINE|L1 -157653 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 740-18 chr11 25553843 25554162 + 4 NA Intergenic Intergenic -635121 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 678-71 chr3 128249899 128250078 + 4 NA intron (NM_021937, intron 2 of 6) L1MB4|LINE|L1 -96074 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 282-27 chr1 227033266 227033336 + 4 NA intron (NM_001366019, intron 27 of 36) intron (NM_001366019, intron 27 of 36) 93007 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 472-248 chr5 55005881 55006064 + 4 NA Intergenic Intergenic 18197 NR_104662 102467081 NR_104662 LOC102467081 - uncharacterized LOC102467081 ncRNA 559-153 chr5 169688909 169689066 + 4 NA intron (NR_156756, intron 8 of 52) intron (NR_156756, intron 8 of 52) 51712 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 716-41 chr20 36037675 36037956 + 4 NA Intergenic AluJb|SINE|Alu 13145 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 NORAD LINC00657 non-coding RNA activated by DNA damage ncRNA 538-82 chr16 64553361 64553616 + 4 NA Intergenic MIRb|SINE|MIR 568575 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 664-104 chr7 16828106 16828328 + 4 NA Intergenic L1M1|LINE|L1 -23218 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 785-38 chr3 193713983 193714323 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -86821 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 646-26 chr11 133141784 133141969 + 4 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -198108 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 937-5 chr12 1872942 1873544 + 4 NA intron (NM_172364, intron 18 of 37).2 intron (NM_172364, intron 18 of 37).2 45409 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 858-33 chr3 137574414 137574736 + 4 NA Intergenic Tigger7|DNA|TcMar-Tigger -189740 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 728-83 chr6 162642619 162642930 + 4 NA intron (NM_004562, intron 1 of 11) LTR37-int|LTR|ERV1 -84358 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 1042-12 chr4 13713350 13713837 + 4 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 58414 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 602-119 chr6 129968300 129968486 + 4 NA Intergenic MamGypLTR1a|LTR|Gypsy -49976 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 779-45 chr5 150888731 150889029 + 4 NA intron (NM_001346557, intron 3 of 3) L1MEc|LINE|L1 16103 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 618-84 chr3 136381060 136381289 + 4 NA intron (NM_005862, intron 22 of 33) L2c|LINE|L2 130834 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 737-37 chr18 47385584 47385838 + 4 NA intron (NR_147192, intron 1 of 2) L1PA16|LINE|L1 5215 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 533-23 chr11 29793865 29794126 + 4 NA Intergenic L1PREC2|LINE|L1 175193 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 1000-28 chr8 127344162 127344550 + 4 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -56043 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 898-13 chr16 78271546 78271963 + 4 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 172100 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 528-17 chr1 103290884 103291067 + 4 NA Intergenic Intergenic -182453 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 782-55 chr5 144298227 144298667 + 4 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 93056 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 1132-12 chr7 42985695 42986257 + 4 NA Intergenic AluSx|SINE|Alu 53600 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 564-69 chr16 74181270 74181496 + 4 NA Intergenic L1ME3G|LINE|L1 34138 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 756-9 chr11 123685940 123686254 + 4 NA Intergenic L1MD2|LINE|L1 -31490 NM_001040151 55800 Hs.4865 NM_018400 ENSG00000166257 SCN3B ATFB16|BRGDA7|HSA243396|SCNB3 sodium voltage-gated channel beta subunit 3 protein-coding 933-21 chr2 152787092 152787409 + 4 NA Intergenic MER4A1|LTR|ERV1 68613 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 618-120 chr7 91909733 91909982 + 4 NA Intergenic AluJr|SINE|Alu -29155 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 683-86 chr8 50281447 50281688 + 4 NA intron (NR_135797, intron 2 of 20) MER31-int|LTR|ERV1 117436 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 298-185 chr19 11774169 11774320 + 4 NA intron (NM_152355, intron 1 of 3) L1MCa|LINE|L1 7244 NM_152355 126068 Hs.675132 NM_152355 ENSG00000197044 ZNF441 - zinc finger protein 441 protein-coding 932-27 chr6 34726469 34726787 + 4 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat 29683 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 643-64 chr20 55425254 55425586 + 4 NA intron (NR_110064, intron 1 of 2) intron (NR_110064, intron 1 of 2) 1777 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 1455-4 chr2 67026950 67027709 + 4 NA Intergenic L1ME2z|LINE|L1 -59117 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 614-32 chr14 55794099 55794353 + 4 NA intron (NR_026797, intron 1 of 2) MLT1F2|LTR|ERVL-MaLR 2448 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 642-19 chr11 75740334 75740530 + 4 NA Intergenic L1MC3|LINE|L1 22594 NM_025098 80168 Hs.288568 NM_025098 ENSG00000166391 MOGAT2 DGAT2L5|DGAT2L5.|MGAT2|hDC5 monoacylglycerol O-acyltransferase 2 protein-coding 453-261 chr7 79732954 79733127 + 4 NA Intergenic L1M1|LINE|L1 279080 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 1089 chr10 119995843 119996271 + 4 NA Intergenic L1PBa|LINE|L1 37544 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 406-245 chr5 148892533 148892697 + 4 NA Intergenic L1PB1|LINE|L1 66022 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 840-15 chr14 86730565 86730990 + 4 NA Intergenic L1MC4|LINE|L1 -175001 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 706 chr1 5258678 5259011 + 4 NA Intergenic L1MCc|LINE|L1 603897 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 644-114 chrX 66380695 66381008 + 4 NA Intergenic Intergenic 213101 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 670-119 chr8 54886009 54886295 + 4 NA Intergenic L1MA9|LINE|L1 -215876 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 862-2 chr10 15499332 15499762 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -128258 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 663-94 chr6 105714855 105715037 + 4 NA Intergenic Tigger3c|DNA|TcMar-Tigger -311864 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 1297-5 chr3 71743354 71744032 + 4 NA intron (NM_173359, intron 1 of 7) L1MEc|LINE|L1 9898 NM_001282886 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 562-35 chr11 78241679 78241843 + 4 NA intron (NM_012296, intron 3 of 9) L1M2a|LINE|L1 52842 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 420-59 chr12 14011440 14011657 + 4 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -31192 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 1120-12 chr8 134384833 134385338 + 4 NA Intergenic Intergenic -212986 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 688-114 chr9 12695450 12695639 + 4 NA exon (NM_000550, exon 3 of 8) exon (NM_000550, exon 3 of 8) 2159 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 669-50 chr2 52764004 52764389 + 4 NA Intergenic Intergenic -61581 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 1030-14 chr2 77996021 77996359 + 4 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -41164 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 716-6 chr1 227646655 227646895 + 4 NA intron (NM_178549, intron 3 of 3) intron (NM_178549, intron 3 of 3) 50932 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 614-66 chr20 10704184 10704356 + 4 NA Intergenic Intergenic -30271 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 573-66 chr14 78088312 78088532 + 4 NA Intergenic Intergenic -81951 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 2238 chr18 5928655 5929526 + 4 NA Intergenic Intergenic -33136 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 760-25 chr18 76092380 76092733 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -30442 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 716-64 chr5 61655988 61656221 + 4 NA intron (NR_126524, intron 2 of 3) intron (NR_126524, intron 2 of 3) 18323 NR_126524 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 1118-2 chr10 75666793 75667247 + 4 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 19511 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 715-23 chr16 65592605 65592894 + 4 NA Intergenic Intergenic -16449 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 645-25 chr12 115281746 115281943 + 4 NA Intergenic MER20|DNA|hAT-Charlie -597669 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 957-28 chr5 167873173 167873599 + 4 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 118457 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 541-176 chr5 3697248 3697392 + 4 NA Intergenic L1MEj|LINE|L1 101488 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 919-6 chr13 63504033 63504528 + 4 NA Intergenic Intergenic -176186 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 577-125 chr3 182461996 182462233 + 4 NA intron (NR_040105, intron 2 of 3) L1MA5|LINE|L1 24248 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 1360-3 chr19 52382178 52382917 + 4 NA intron (NM_001145434, intron 3 of 3) L1MB5|LINE|L1 12624 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 630-10 chr10 116571534 116571759 + 4 NA Intergenic Charlie25|DNA|hAT-Charlie -19313 NM_006229 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 588-14 chr10 118773483 118773709 + 4 NA Intergenic MLT1L-int|LTR|ERVL-MaLR -18626 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 584-59 chr18 33973497 33973837 + 4 NA intron (NM_001353232, intron 6 of 9) Tigger1|DNA|TcMar-Tigger 74945 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 719-6 chr1 192625891 192626151 + 4 NA Intergenic L2c|LINE|L2 -10126 NM_002927 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 1034-11 chr2 95145799 95146357 + 4 NA 3' UTR (NM_032788, exon 5 of 5) 3' UTR (NM_032788, exon 5 of 5) 13507 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 418-2 chr1 62865036 62865197 + 4 NA 3' UTR (NM_032852, exon 11 of 11) 3' UTR (NM_032852, exon 11 of 11) 80984 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 641-12 chr10 71199171 71199472 + 4 NA Intergenic L1MEf|LINE|L1 -13249 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 955-6 chr12 119399115 119399573 + 4 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 64615 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 921-26 chr8 133965409 133965804 + 4 NA Intergenic L1M5|LINE|L1 79110 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 743-26 chr17 34509500 34509739 + 4 NA Intergenic L1MC5|LINE|L1 69750 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 788-60 chrX 58338133 58338571 + 4 NA Intergenic ALR/Alpha|Satellite|centr -427719 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 398-348 chr8 74250108 74250297 + 4 NA intron (NM_020647, intron 3 of 5) AluSx|SINE|Alu 71159 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 648-121 chr5 164526015 164526234 + 4 NA intron (NR_105065, intron 2 of 3) intron (NR_105065, intron 2 of 3) 55845 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 1069-3 chr11 60227661 60228051 + 4 NA intron (NM_001351235, intron 3 of 5) L1MC1|LINE|L1 15281 NM_001351235 643680 Hs.559934 NM_001351235 MS4A4E - membrane spanning 4-domains A4E protein-coding 574-87 chr2 194435810 194436023 + 4 NA Intergenic Intergenic 91647 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 982-25 chr7 89860078 89860630 + 4 NA Intergenic HUERS-P3b-int|LTR|ERV1 -259046 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 967-10 chr18 34932918 34933396 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -43771 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 1041-8 chr2 230269063 230269493 + 4 NA intron (NM_001278453, intron 9 of 23) intron (NM_001278453, intron 9 of 23) 43542 NM_007237 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 568-157 chr5 4932578 4932846 + 4 NA Intergenic L1MA9|LINE|L1 -101647 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 652-130 chr9 86384944 86385237 + 4 NA Intergenic L1M2|LINE|L1 -30680 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 323-436 chr5 153191863 153191953 + 4 NA Intergenic MIRc|SINE|MIR -219559 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 837-36 chr5 85798175 85798545 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -484084 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 780-49 chr5 115510881 115511228 + 4 NA Intergenic L1MEd|LINE|L1 33721 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 905-24 chr4 47990796 47991161 + 4 NA TTS (NR_125879) TTS (NR_125879) -9445 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 727-68 chr6 49274153 49274417 + 4 NA Intergenic Intergenic 188968 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 304-494 chr7 133427337 133427444 + 4 NA intron (NM_021807, intron 7 of 17) intron (NM_021807, intron 7 of 17) 136509 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 1079-3 chr17 33706979 33707526 + 4 NA intron (NM_001094, intron 1 of 9) HAL1|LINE|L1 -173492 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 534-189 chr5 7438969 7439219 + 4 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 42956 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 648-9 chr1 207179770 207180066 + 4 NA Intergenic LTR16E1|LTR|ERVL 75685 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 1120-9 chr4 60472712 60473135 + 4 NA Intergenic AluSx|SINE|Alu -449696 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 959-29 chr7 3678600 3678897 + 4 NA intron (NM_152744, intron 4 of 44) L1MB4|LINE|L1 377496 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 660-102 chr7 96959618 96959784 + 4 NA Intergenic L1ME3G|LINE|L1 -45852 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 582-107 chr4 52280412 52280656 + 4 NA Intergenic L1PREC2|LINE|L1 229230 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 1026-9 chr16 22794745 22795075 + 4 NA Intergenic MIR|SINE|MIR -19252 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 1730-3 chr16 23703192 23703798 + 4 NA intron (NM_001308220, intron 8 of 20) L2c|LINE|L2 9727 NM_001308220 10595 Hs.592041 NM_033266 ENSG00000134398 ERN2 IRE1-BETA|IRE1b|IRE2p|hIRE2p endoplasmic reticulum to nucleus signaling 2 protein-coding 638-72 chr2 114175944 114176264 + 4 NA Intergenic Intergenic -196120 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 687-14 chr10 60674478 60674807 + 4 NA intron (NM_001204403, intron 1 of 43) MSTB|LTR|ERVL-MaLR 58886 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 1204-5 chr5 30286778 30287493 + 4 NA Intergenic L1M2|LINE|L1 406575 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 774-61 chr3 135959390 135959662 + 4 NA Intergenic Intergenic -6202 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 1396-2 chr1 100215187 100215700 + 4 NA intron (NM_001918, intron 6 of 10) intron (NM_001918, intron 6 of 10) 34391 NM_001918 1629 Hs.709187 NM_001918 ENSG00000137992 DBT BCATE2|BCKAD-E2|BCKADE2|BCOADC-E2|E2|E2B dihydrolipoamide branched chain transacylase E2 protein-coding 1262-6 chr2 53557218 53557814 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -210267 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 757-33 chr20 12902481 12902709 + 4 NA intron (NR_109868, intron 7 of 11) intron (NR_109868, intron 7 of 11) 34368 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 951-22 chr4 57653752 57654346 + 4 NA Intergenic Intergenic 228177 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 663-102 chr7 19936635 19936868 + 4 NA intron (NR_110114, intron 5 of 5) L1M4b|LINE|L1 -163134 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 498-128 chr2 107088181 107088353 + 4 NA Intergenic MLT1F2|LTR|ERVL-MaLR -201158 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 452-92 chr15 87080974 87081103 + 4 NA Intergenic Intergenic -92612 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 692-79 chr5 129809836 129810029 + 4 NA Intergenic Intergenic 61838 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 741-12 chr11 87338743 87338986 + 4 NA Intergenic Intergenic 300930 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 710-68 chr3 106825836 106826128 + 4 NA Intergenic MER67B|LTR|ERV1 414656 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 604-111 chr3 117053182 117053481 + 4 NA Intergenic Intergenic 131900 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 506-134 chr2 48000891 48001095 + 4 NA Intergenic L1PA15-16|LINE|L1 -95200 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 614-4 chr1 116121746 116122045 + 4 NA intron (NM_152367, intron 3 of 6) L2b|LINE|L2 10140 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 779-11 chr10 83311065 83311390 + 4 NA Intergenic Intergenic 365862 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1012-15 chr9 35207834 35208303 + 4 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 46059 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 973-21 chr3 189193331 189193772 + 4 NA intron (NM_198485, intron 1 of 5) L1M2a|LINE|L1 21580 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 408-62 chr11 41597683 41597853 + 4 NA Intergenic Intergenic -116800 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 933-4 chr10 55390172 55390644 + 4 NA intron (NM_001354404, intron 2 of 34) Tigger1|DNA|TcMar-Tigger -208634 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 717-89 chr9 12848250 12848543 + 4 NA Intergenic Intergenic -34007 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 965-12 chr20 9446734 9447270 + 4 NA intron (NM_000933, intron 28 of 35) intron (NM_000933, intron 28 of 35) -67356 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 692-54 chr2 210809655 210809893 + 4 NA Intergenic L1MA3|LINE|L1 192203 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 603-72 chr18 70950665 70950931 + 4 NA Intergenic Intergenic -299844 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 1748 chr5 150926447 150927324 + 4 NA Intergenic L1M3b|LINE|L1 19699 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 666-106 chr6 162064907 162065074 + 4 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) 594013 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 680-17 chr10 41739977 41740270 + 4 NA Intergenic ALR/Alpha|Satellite|centr 627922 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 650-87 chr4 69538211 69538620 + 4 NA Intergenic Intergenic -12401 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 833-24 chr3 104091138 104091423 + 4 NA Intergenic Intergenic -567164 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 986-29 chr5 143938568 143939076 + 4 NA Intergenic L1ME3G|LINE|L1 126661 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 652-6 chr1 108805062 108805338 + 4 NA intron (NM_007269, intron 17 of 18) intron (NM_007269, intron 17 of 18) 51894 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 969-10 chr15 25592099 25592668 + 4 NA Intergenic L1MC5|LINE|L1 -153327 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 627-57 chr2 107950819 107951018 + 4 NA Intergenic L1PB4|LINE|L1 -35606 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 425-51 chr11 25970968 25971194 + 4 NA Intergenic Intergenic -218042 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 528-152 chr21 25278783 25278933 + 4 NA Intergenic L1MA9|LINE|L1 152843 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 385-32 chr10 59459977 59460171 + 4 NA Intergenic MIR|SINE|MIR -96893 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 1099-3 chr10 81743647 81744100 + 4 NA Intergenic L1ME3B|LINE|L1 -131321 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 857-54 chr9 117197455 117197799 + 4 NA intron (NM_001365068, intron 3 of 22) intron (NM_001365068, intron 3 of 22) -16426 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 728-18 chr12 4791223 4791540 + 4 NA Intergenic L1MB8|LINE|L1 -17795 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 1170-5 chr5 151362532 151363119 + 4 NA Intergenic L1M3f|LINE|L1 -15266 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 720-72 chr5 151933451 151933795 + 4 NA Intergenic Intergenic -8772 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 760-30 chr2 67274198 67274562 + 4 NA intron (NR_110564, intron 3 of 4) intron (NR_110564, intron 3 of 4) -59061 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 1167-18 chr8 140075834 140076439 + 4 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 24399 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1025-19 chr8 109066234 109066728 + 4 NA Intergenic L1MC1|LINE|L1 -20147 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 951-4 chr10 123183356 123183741 + 4 NA Intergenic L1MEi|LINE|L1 29146 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 1167-19 chr9 93816952 93817587 + 4 NA Intergenic L1MB7|LINE|L1 -2088 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 957-27 chr5 56607070 56607508 + 4 NA Intergenic Intergenic -1033 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 927-2 chr11 38799770 38800234 + 4 NA Intergenic Intergenic 151144 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 1062-17 chr5 133722145 133722591 + 4 NA Intergenic MER1B|DNA|hAT-Charlie -109827 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 427-71 chr14 63000121 63000352 + 4 NA intron (NM_139318, intron 4 of 10) intron (NM_139318, intron 4 of 10) 45222 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 598-110 chr5 94329014 94329285 + 4 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -217450 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 536-201 chr6 101420870 101421124 + 4 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 22012 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 302-162 chr16 83814618 83814745 + 4 NA 3' UTR (NM_001537, exon 4 of 4) 3' UTR (NM_001537, exon 4 of 4) 6703 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 650-41 chr18 46362283 46362505 + 4 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 28170 NR_046357 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 1107-10 chr8 99368419 99368926 + 4 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 168058 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 882-38 chr5 68473066 68473569 + 4 NA Intergenic MIRc|SINE|MIR 180740 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 970-21 chr9 78140032 78140358 + 4 NA Intergenic L3|LINE|CR1 -95880 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 1295-3 chr15 46171869 46172616 + 4 NA Intergenic Intergenic 467047 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 378-398 chr7 38497304 38497456 + 4 NA intron (NM_001635, intron 3 of 20) intron (NM_001635, intron 3 of 20) 133993 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 646-106 chr5 137914886 137915178 + 4 NA intron (NM_001300921, intron 8 of 14) L1MA9|LINE|L1 25575 NM_014386 27039 Hs.716884 NM_014386 ENSG00000078795 PKD2L2 TRPP5 polycystin 2 like 2, transient receptor potential cation channel protein-coding 678-21 chr12 65735976 65736156 + 4 NA Intergenic Intergenic -88394 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 805-14 chr14 59403690 59403891 + 4 NA Intergenic L1P2|LINE|L1 61590 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 647-65 chr3 60817170 60817355 + 4 NA intron (NR_148921, intron 4 of 4) L1MEf|LINE|L1 -199392 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 576-113 chr4 322761 322956 + 4 NA Intergenic L1MA7|LINE|L1 -14956 NM_001348279 7700 Hs.654355 NM_003441 ENSG00000131127 ZNF141 D4S90|pHZ-44 zinc finger protein 141 protein-coding 658-62 chr2 12847364 12847716 + 4 NA Intergenic Tigger3a|DNA|TcMar-Tigger 110173 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 1054-10 chr3 174453479 174454093 + 4 NA Intergenic L1PA13|LINE|L1 -405548 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 832-39 chr5 119944204 119944615 + 4 NA Intergenic Intergenic 314850 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 434-102 chr16 72259043 72259207 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -86675 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 718-48 chr21 20576511 20576770 + 4 NA Intergenic Intergenic 226468 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 934-8 chr10 107905856 107906227 + 4 NA intron (NR_125760, intron 4 of 4) MamRTE1|LINE|RTE-BovB 163252 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 729-63 chr5 66130617 66130882 + 4 NA Intergenic L1MEf|LINE|L1 -13551 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 398-40 chr10 59548730 59548917 + 4 NA Intergenic L1MC4a|LINE|L1 161068 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 748-24 chr11 97207503 97207773 + 4 NA Intergenic L1ME2|LINE|L1 699213 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1093-8 chr20 3385744 3386175 + 4 NA intron (NM_001009984, intron 1 of 36) L1MD|LINE|L1 21703 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 343-305 chr20 53068293 53068452 + 4 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 96014 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 993-17 chr5 9865198 9865570 + 4 NA intron (NR_027112, intron 4 of 12) L1MEg|LINE|L1 11007 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 349-236 chr19 57971708 57971833 + 4 NA intron (NM_152474, intron 3 of 5) AluSx1|SINE|Alu 2764 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 782-60 chr7 30216992 30217246 + 4 NA Intergenic L1MC1|LINE|L1 -67478 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 1402-5 chr21 32112847 32113318 + 4 NA Intergenic Intergenic -26787 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 1477-2 chr19 9552452 9553083 + 4 NA Intergenic MER52C|LTR|ERV1 14101 NR_134921 101928238 Hs.324978 NR_134920 ENSG00000278611 ZNF426-DT - ZNF426 divergent transcript ncRNA 1174-3 chr18 7846818 7847426 + 4 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 279806 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 1639-4 chr21 7917477 7918322 + 4 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -88267 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 906-19 chr14 41839697 41840234 + 4 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 233109 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1117 chr10 16094483 16094827 + 4 NA Intergenic L1MEc|LINE|L1 -234122 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 831-26 chr20 39866577 39866972 + 4 NA Intergenic Intergenic -137687 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 790-2 chr1 150278664 150278972 + 4 NA intron (NM_001301042, intron 4 of 4) L2|LINE|L2 -3736 NM_144697 148523 Hs.54680 NM_144697 ENSG00000159208 CIART C1orf51|CHRONO|GM129 circadian associated repressor of transcription protein-coding 1398 chr10 53923074 53923766 + 4 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -562810 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 623-27 chr12 3530384 3530644 + 4 NA intron (NM_019854, intron 1 of 9) intron (NM_019854, intron 1 of 9) -37695 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 712-25 chr13 63280492 63280826 + 4 NA intron (NR_126409, intron 2 of 6) intron (NR_126409, intron 2 of 6) 47435 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 1102-17 chr7 54288397 54288982 + 4 NA Intergenic L1MA4A|LINE|L1 -42008 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 196-179 chr4 40821381 40821467 + 4 NA intron (NM_173075, intron 16 of 16) MIRb|SINE|MIR 35731 NM_001166051 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 1463-2 chr20 9753180 9753874 + 4 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 85549 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 535-240 chr8 75492575 75492807 + 4 NA intron (NM_001330561, intron 3 of 11) MIRc|SINE|MIR -47277 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 418-206 chr5 8544244 8544519 + 4 NA Intergenic MER45R|DNA|hAT-Tip100 83456 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 628-37 chr12 61705112 61705358 + 4 NA Intergenic Intergenic 487604 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 413-299 chr8 49033346 49033574 + 4 NA Intergenic Intergenic -20876 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 1144-6 chr2 128343570 128344167 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -25000 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 1078-10 chr3 88370864 88371341 + 4 NA intron (NM_001368167, intron 2 of 2) MLT1A|LTR|ERVL-MaLR 32646 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 997-15 chr2 204945136 204945593 + 4 NA intron (NM_205863, intron 2 of 21) LTR26|LTR|ERV1 399889 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 789-42 chr7 25976296 25976647 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -26485 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 577-143 chr5 22339572 22339788 + 4 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -125830 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 1188-3 chr12 14473333 14473867 + 4 NA intron (NM_181352, intron 10 of 14) L1M4a1|LINE|L1 88319 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 591-90 chr21 30040089 30040272 + 4 NA Intergenic L1MC4|LINE|L1 -100128 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 981-4 chr12 8120976 8121310 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -2489 NM_016184 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 639-102 chr6 39600367 39600569 + 4 NA intron (NM_001289020, intron 6 of 21) A-rich|Low_complexity|Low_complexity 124940 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 987-18 chr8 89994460 89994848 + 4 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat -6698 NM_001330575 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 1446 chr11 82107416 82108015 + 4 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -216879 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 989-7 chr16 52710731 52711117 + 4 NA Intergenic Intergenic -103949 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 714-36 chr2 48664904 48665086 + 4 NA intron (NM_172311, intron 8 of 10) AluSz6|SINE|Alu 47139 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 746-67 chr7 8600023 8600343 + 4 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 166574 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 664-118 chr8 115058341 115058552 + 4 NA Intergenic L2|LINE|L2 609567 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 575-120 chr3 97093052 97093303 + 4 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 278583 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 552-215 chr8 121021447 121021651 + 4 NA Intergenic Intergenic -209503 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 740-16 chr10 89996675 89997047 + 4 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -39488 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 519-139 chr21 26276013 26276207 + 4 NA Intergenic L1MA7|LINE|L1 -104982 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 610-134 chr5 13612428 13612678 + 4 NA Intergenic AluSx1|SINE|Alu 331927 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 297-486 chr8 110095793 110095936 + 4 NA Intergenic AluJb|SINE|Alu -120093 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 743-45 chr2 202740958 202741298 + 4 NA intron (NM_173511, intron 4 of 7) L1M5|LINE|L1 88106 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 466-264 chr8 57771289 57771578 + 4 NA Intergenic L1ME2z|LINE|L1 25284 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 723-67 chr6 133810530 133810816 + 4 NA intron (NR_109982, intron 2 of 8) MER77B|LTR|ERVL -10474 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 511-117 chr2 53421588 53421851 + 4 NA Intergenic L1PA15|LINE|L1 -346064 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 656-25 chr10 116538761 116539083 + 4 NA Intergenic MER44D|DNA|TcMar-Tigger -7009 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 573-61 chr14 45314899 45315232 + 4 NA Intergenic Intergenic -61863 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 1063-17 chr21 32112075 32112533 + 4 NA Intergenic MIRb|SINE|MIR -26009 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 694-32 chr13 42742995 42743184 + 4 NA Intergenic Intergenic -38461 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 838-9 chr11 21331167 21331479 + 4 NA intron (NM_201551, intron 14 of 18) L1M4b|LINE|L1 661737 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 690-27 chr12 119353238 119353455 + 4 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 18617 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 653-7 chr1 116796357 116796607 + 4 NA Intergenic MER39|LTR|ERV1 42052 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 833-21 chr3 28138369 28138762 + 4 NA Intergenic Intergenic -103054 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 727-53 chr3 26288143 26288416 + 4 NA Intergenic LTR49|LTR|ERV1 -334527 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 500-259 chr6 135256061 135256210 + 4 NA Intergenic Intergenic 16975 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 1364-6 chr4 159071217 159071933 + 4 NA Intergenic Intergenic -32476 NM_001351724 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 678-79 chr4 87731349 87731667 + 4 NA Intergenic Intergenic -68046 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 753-44 chr4 66332604 66333023 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie 55989 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 656-87 chr4 121179495 121179775 + 4 NA intron (NM_001128843, intron 3 of 12) intron (NM_001128843, intron 3 of 12) -15314 NM_024873 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 348-304 chr3 87622640 87622828 + 4 NA Intergenic Intergenic -169972 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 561-128 chr3 40650620 40650778 + 4 NA Intergenic L1ME4b|LINE|L1 125739 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 628-140 chr9 77503179 77503528 + 4 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 55704 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 711-53 chr4 163419260 163419561 + 4 NA Intergenic MLT1J1|LTR|ERVL-MaLR 54344 NM_032136 84076 Hs.303923 NM_032136 ENSG00000151005 TKTL2 - transketolase like 2 protein-coding 549-191 chr7 35322042 35322333 + 4 NA intron (NR_038864, intron 1 of 2) L1MD|LINE|L1 8332 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 749-25 chr12 112769700 112770139 + 4 NA intron (NM_001347952, intron 1 of 21) L1ME3G|LINE|L1 -21619 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 701-84 chr6 126591882 126592089 + 4 NA Intergenic Intergenic 107354 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 1024-17 chr20 42749805 42750233 + 4 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 64536 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 737-55 chr3 4105754 4106132 + 4 NA Intergenic L1ME3Cz|LINE|L1 -197361 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 761-70 chr7 128194783 128195172 + 4 NA Intergenic L1MEf|LINE|L1 -12895 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 586-61 chr17 34142333 34142568 + 4 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 14356 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 1625-2 chr7 4438997 4439568 + 4 NA Intergenic MER20B|DNA|hAT-Charlie -243013 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 951-16 chr2 39803876 39804395 + 4 NA Intergenic L1MEg|LINE|L1 -24859 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 1011-4 chr1 221427908 221428360 + 4 NA Intergenic L1M4|LINE|L1 -91838 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 765-50 chr4 113851281 113851741 + 4 NA Intergenic Intergenic -89584 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 524-136 chr21 24652257 24652447 + 4 NA Intergenic L1ME3A|LINE|L1 -188198 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 788-25 chr18 13963699 13964065 + 4 NA Intergenic Intergenic -48175 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 656-44 chr16 80639379 80639617 + 4 NA intron (NM_152342, intron 2 of 6) L1MC3|LINE|L1 -66690 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 702-9 chr10 77370089 77370415 + 4 NA intron (NR_126365, intron 3 of 5) intron (NR_126365, intron 3 of 5) 19380 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 1213-2 chr11 23001086 23001733 + 4 NA Intergenic Intergenic -140935 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 1233-4 chr16 6938626 6938997 + 4 NA intron (NM_001142334, intron 1 of 13) AluSz|SINE|Alu 165002 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 813-39 chr7 52944229 52944670 + 4 NA Intergenic L1M5|LINE|L1 -91184 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 646-129 chr8 107624636 107624924 + 4 NA Intergenic L2b|LINE|L2 -126862 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 681-10 chr11 106545206 106545510 + 4 NA Intergenic L1ME1|LINE|L1 293951 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 981 chr10 42316208 42316629 + 4 NA Intergenic Intergenic 51627 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 394-341 chr9 86438532 86438703 + 4 NA Intergenic Intergenic -84207 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 632-105 chr6 149245654 149245951 + 4 NA intron (NR_149096, intron 1 of 2) intron (NR_149096, intron 1 of 2) 11749 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 895-38 chr6 40440661 40440981 + 4 NA intron (NM_020737, intron 1 of 2) LTR16C|LTR|ERVL 62484 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 1535 chr9 120215842 120216539 + 4 NA Intergenic Intergenic 28860 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 1259-10 chr7 105195949 105196424 + 4 NA intron (NM_182692, intron 3 of 15) intron (NM_182692, intron 3 of 15) 72891 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 940-32 chr6 121563621 121564048 + 4 NA Intergenic Charlie11|DNA|hAT-Charlie 128188 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 396-72 chr11 43889668 43889772 + 4 NA intron (NM_139178, intron 5 of 9) intron (NM_139178, intron 5 of 9) -7583 NR_026952 729799 Hs.368920 NR_026952 ENSG00000213693 SEC14L1P1 - SEC14 like 1 pseudogene 1 pseudo 913-36 chr7 10777302 10777647 + 4 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 2470 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 730-53 chr4 54823124 54823514 + 4 NA Intergenic Intergenic 165391 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 660-59 chr21 28241894 28242061 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -13310 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 445-154 chr20 47805892 47806147 + 4 NA Intergenic LTR1D1|LTR|ERV1 -19403 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 1659 chr19 40033582 40034477 + 4 NA 3' UTR (NM_001005851, exon 5 of 5) 3' UTR (NM_001005851, exon 5 of 5) 22202 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 863-36 chr5 63322570 63323075 + 4 NA Intergenic Intergenic 639470 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1745-4 chr7 62979478 62980126 + 4 NA Intergenic ALR/Alpha|Satellite|centr 324254 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 713-4 chr1 105807881 105808133 + 4 NA Intergenic L1M1|LINE|L1 -189072 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 1222-3 chr17 62811950 62812529 + 4 NA intron (NR_135634, intron 1 of 1) intron (NR_135634, intron 1 of 1) 3737 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 687-125 chr8 138402352 138402668 + 4 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 94751 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 636-43 chr14 49154311 49154560 + 4 NA Intergenic Intergenic 431945 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 667-105 chr7 95554963 95555175 + 4 NA Intergenic MIRb|SINE|MIR 41447 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 850-54 chr9 102415551 102415986 + 4 NA Intergenic Intergenic -103869 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 1246-8 chr4 71867690 71868150 + 4 NA Intergenic Intergenic -62400 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 215-69 chr12 119653415 119653503 + 4 NA Intergenic L1MEf|LINE|L1 -14674 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 946-24 chr7 79785552 79785922 + 4 NA Intergenic Intergenic 331777 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 558-78 chr18 12892336 12892520 + 4 NA Intergenic Intergenic -8093 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 836-37 chr3 13973434 13973854 + 4 NA intron (NR_002223, intron 1 of 2) L1PBa|LINE|L1 36337 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 745-57 chr6 39137508 39137817 + 4 NA Intergenic Intergenic -22476 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 592-91 chr2 149898412 149898641 + 4 NA Intergenic HERV16-int|LTR|ERVL -39335 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 528-261 chr9 93759402 93759658 + 4 NA Intergenic L1ME1|LINE|L1 -59827 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 649-15 chr11 92813741 92813987 + 4 NA intron (NM_001008781, intron 12 of 24) intron (NM_001008781, intron 12 of 24) 101764 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 763-67 chr8 126355071 126355408 + 4 NA Intergenic Intergenic 29744 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 1012-2 chr10 80795176 80795673 + 4 NA Intergenic Intergenic 145627 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 637-75 chr20 61682988 61683286 + 4 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 36611 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 639-78 chr3 7205607 7205779 + 4 NA intron (NM_000844, intron 2 of 9) MARNA|DNA|TcMar-Mariner -311676 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 611-147 chr8 83909747 83910065 + 4 NA Intergenic HAL1|LINE|L1 -272881 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 670-90 chr4 162973956 162974400 + 4 NA Intergenic L2b|LINE|L2 119450 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 1024-10 chr10 51033629 51033956 + 4 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 34760 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 642-94 chr5 85536558 85536865 + 4 NA Intergenic Intergenic -745733 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 537-17 chr1 188185853 188186054 + 4 NA Intergenic LTR53-int|LTR|ERVL 742325 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 893-12 chr12 7581186 7581709 + 4 NA Intergenic MER21B|LTR|ERVL -77629 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 628-53 chr16 51792170 51792431 + 4 NA Intergenic Intergenic 29781 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 538-184 chr4 130822884 130823052 + 4 NA Intergenic L1MC1|LINE|L1 446607 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 944-27 chr9 105427387 105427681 + 4 NA intron (NM_001330731, intron 15 of 15) AluJo|SINE|Alu -20500 NM_001145313 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 972-15 chr3 80383529 80383915 + 4 NA Intergenic L1P4a|LINE|L1 -381175 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 965-23 chr8 24315709 24316163 + 4 NA intron (NM_014265, intron 6 of 22) L1M4c|LINE|L1 21867 NR_130710 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 458-241 chr7 106593804 106594022 + 4 NA Intergenic Intergenic 67245 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 414-192 chr21 27615769 27615996 + 4 NA Intergenic L1MCa|LINE|L1 -106497 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 643-84 chr4 59709542 59709923 + 4 NA Intergenic Intergenic 696159 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 798-22 chr18 1088865 1089305 + 4 NA Intergenic L1PB1|LINE|L1 -161092 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 651-34 chr13 96572250 96572473 + 4 NA intron (NM_153456, intron 1 of 1) MamRep434|DNA|TcMar-Tigger 145132 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 1124-7 chr5 30729177 30729866 + 4 NA Intergenic L1MCb|LINE|L1 -464165 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 942-10 chr16 55134290 55134629 + 4 NA Intergenic MLT1E3|LTR|ERVL-MaLR -190100 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 492-202 chr5 8901501 8901673 + 4 NA Intergenic Intergenic 61855 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 1852-4 chr3 189551794 189552728 + 4 NA Intergenic L1MEc|LINE|L1 -44485 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1169-3 chr10 97007204 97007649 + 4 NA intron (NM_003061, intron 31 of 36) L1MB8|LINE|L1 -95330 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 953-19 chr4 147850 148322 + 4 NA intron (NR_110527, intron 3 of 4) L1MB1|LINE|L1 19965 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 431-21 chr1 184879075 184879224 + 4 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) 95359 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 583-8 chr1 163747984 163748270 + 4 NA Intergenic Intergenic -324936 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 836-32 chr2 185017233 185017512 + 4 NA Intergenic Intergenic 149700 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 746-8 chr1 192109473 192109799 + 4 NA Intergenic Intergenic -48826 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 654-87 chr4 100430827 100431068 + 4 NA intron (NM_001159694, intron 4 of 10) intron (NM_001159694, intron 4 of 10) -35700 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 618-32 chr13 58951473 58951784 + 4 NA Intergenic Intergenic -718511 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 696-102 chr7 111464628 111464914 + 4 NA intron (NM_001350961, intron 4 of 7) intron (NM_001350961, intron 4 of 7) 97520 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 733-28 chr19 57688327 57688606 + 4 NA non-coding (NR_073102, exon 2 of 2) non-coding (NR_073102, exon 2 of 2) 6489 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 567-93 chr2 152943402 152943566 + 4 NA Intergenic Intergenic 224847 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 380-386 chr8 50029743 50029855 + 4 NA intron (NR_135798, intron 1 of 15) L1MA3|LINE|L1 118392 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 625-108 chr7 145000176 145000474 + 4 NA Intergenic L1M2|LINE|L1 -164272 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 1048-10 chr14 95541929 95542443 + 4 NA intron (NM_016417, intron 1 of 1) intron (NM_016417, intron 1 of 1) 7136 NM_016417 51218 Hs.744943 NM_016417 ENSG00000182512 GLRX5 C14orf87|FLB4739|GRX5|PR01238|PRO1238|PRSA|SIDBA3|SPAHGC glutaredoxin 5 protein-coding 1460 chr2 108889490 108890063 + 4 NA Intergenic L1MA4A|LINE|L1 99444 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 1058-16 chr6 49128992 49129395 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 334060 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 560-73 chr18 64450505 64450697 + 4 NA Intergenic Intergenic -190546 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 826-19 chr14 80118526 80118944 + 4 NA Intergenic L2a|LINE|L2 -92684 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 537-259 chr8 119567004 119567162 + 4 NA intron (NM_001330600, intron 23 of 25) intron (NM_001330600, intron 23 of 25) 25925 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 840-54 chrUn_KI270438v1 106462 106873 + 4 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 1086-17 chr22 48816783 48817144 + 4 NA Intergenic Intergenic 36668 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 438-219 chr5 59950427 59950658 + 4 NA intron (NM_001165899, intron 3 of 16) L2c|LINE|L2 -56816 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 666-45 chr18 10970344 10970513 + 4 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) 178334 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 572-94 chr2 138263306 138263503 + 4 NA Intergenic Intergenic 161520 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 502-221 chr5 38068846 38069083 + 4 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 43267 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 316-209 chr17 52976172 52976320 + 4 NA Intergenic L1MC1|LINE|L1 -9259 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 644-4 chr1 191304510 191304774 + 4 NA Intergenic Intergenic -76144 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 975-22 chr8 90257034 90257462 + 4 NA intron (NR_051989, intron 2 of 3) L1MEf|LINE|L1 35760 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 662-22 chr14 44459304 44459494 + 4 NA Intergenic L1M2|LINE|L1 47884 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1089-17 chr8 86585864 86586322 + 4 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 71658 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 534-174 chr4 43269682 43269836 + 4 NA Intergenic MIR|SINE|MIR 222784 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 883-6 chr12 118952153 118952644 + 4 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -29143 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 379-69 chr12 19957009 19957145 + 4 NA Intergenic Intergenic -57608 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 650-114 chr7 23053517 23053692 + 4 NA Intergenic MLT1A|LTR|ERVL-MaLR -39474 NM_032581 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 425-317 chr8 131049284 131049505 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR -8485 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 559-183 chr8 79513200 79513522 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -97756 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 664-107 chr7 46395002 46395239 + 4 NA Intergenic Intergenic 302002 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 736-24 chr14 52567231 52567631 + 4 NA intron (NM_001353361, intron 1 of 7) intron (NM_001353361, intron 1 of 7) 14595 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 532-273 chr8 79202983 79203146 + 4 NA Intergenic MIR|SINE|MIR -129124 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 547-159 chr4 73858478 73858775 + 4 NA Intergenic Intergenic 5330 NM_002620 5197 Hs.72933 NM_002620 ENSG00000109272 PF4V1 CXCL4L1|CXCL4V1|PF4-ALT|PF4A|SCYB4V1 platelet factor 4 variant 1 protein-coding 496-86 chr14 65969867 65970173 + 4 NA Intergenic Intergenic 498918 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 716-91 chr9 26763916 26764276 + 4 NA Intergenic Intergenic 128706 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 541-148 chr22 25532315 25532587 + 4 NA Intergenic L1MC5|LINE|L1 -32224 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 512-149 chr20 62076737 62076920 + 4 NA Intergenic L1MA7|LINE|L1 -11018 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 535-255 chr9 29294960 29295144 + 4 NA Intergenic L1M1|LINE|L1 -81451 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 752-28 chr17 61437243 61437534 + 4 NA Intergenic L1MA9|LINE|L1 -15034 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 834-35 chr5 26932392 26932724 + 4 NA intron (NM_016279, intron 2 of 11) L1MCa|LINE|L1 106028 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 750 chr1 57854691 57855027 + 4 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -5722 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 724-86 chr6 85895107 85895315 + 4 NA Intergenic L1P1|LINE|L1 -216478 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 599-111 chr5 114901820 114902052 + 4 NA Intergenic L1PA16|LINE|L1 -128523 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 1223-9 chr22 28190684 28191168 + 4 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -268943 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 401-244 chr4 178806953 178807166 + 4 NA Intergenic MER34A|LTR|ERV1 -899123 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 674-12 chr10 120604150 120604478 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR 6365 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 544-150 chr3 96282299 96282477 + 4 NA Intergenic Intergenic -77576 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 773-4 chr10 109969217 109969527 + 4 NA intron (NR_038943, intron 2 of 4) LTR103_Mam|LTR|ERV1? -27001 NM_001320591 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 712-36 chr18 10371822 10372065 + 4 NA Intergenic Intergenic 42427 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 632-74 chr3 76687854 76688020 + 4 NA Intergenic Intergenic -352162 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 1577-3 chr2 80594641 80595476 + 4 NA intron (NM_001282599, intron 9 of 11) L1MB3|LINE|L1 281679 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 773-52 chr8 141748033 141748402 + 4 NA Intergenic L1MC2|LINE|L1 38096 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 582-86 chr20 19005294 19005504 + 4 NA Intergenic Intergenic -175196 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 511-64 chr14 58680435 58680689 + 4 NA Intergenic Intergenic 41725 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 515-97 chr18 14112205 14112419 + 4 NA intron (NM_145287, intron 2 of 2) L1M1|LINE|L1 20123 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 738-69 chr8 85489029 85489227 + 4 NA Intergenic L1PB1|LINE|L1 -24213 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 534-80 chr15 66870274 66870468 + 4 NA Intergenic L1MEf|LINE|L1 86144 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 742-63 chr5 5543416 5543653 + 4 NA Intergenic L1ME3A|LINE|L1 120857 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 940-34 chr7 41396345 41396896 + 4 NA Intergenic L1MC1|LINE|L1 295016 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 822-23 chr18 21918661 21919154 + 4 NA Intergenic L1M5|LINE|L1 -87501 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 1534-4 chr8 116381861 116382589 + 4 NA Intergenic Intergenic -57166 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 810-33 chr3 84400157 84400648 + 4 NA Intergenic Cheshire|DNA|hAT-Charlie 469173 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 595-35 chr11 111048220 111048453 + 4 NA Intergenic MER102c|DNA|hAT-Charlie 48982 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 636 chr1 41220182 41220479 + 4 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) 21976 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 1680 chr1 238830013 238830958 + 4 NA Intergenic LTR76|LTR|ERV1 -344468 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 1241-9 chr4 37334018 37334445 + 4 NA intron (NM_001144990, intron 2 of 6) L1M1|LINE|L1 89488 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 1210-7 chr2 41494685 41495220 + 4 NA Intergenic HUERS-P3-int|LTR|ERV1 -382603 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 1123-10 chr2 34533594 34534123 + 4 NA Intergenic Intergenic -143699 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 645-15 chr11 38640615 38640913 + 4 NA intron (NR_120554, intron 1 of 4) L1MA3|LINE|L1 5592 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 656-124 chr8 43623772 43623945 + 4 NA Intergenic ALR/Alpha|Satellite|centr 331416 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 696-65 chr21 18292003 18292198 + 4 NA intron (NM_002772, intron 21 of 24) MER41D|LTR|ERV1 46225 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 952-15 chr2 175344523 175344887 + 4 NA Intergenic Intergenic -162995 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 960-6 chr12 21118475 21118820 + 4 NA Intergenic L1M1|LINE|L1 -12547 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 291-352 chr5 60975218 60975310 + 4 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 30059 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 924-43 chr9 28159631 28159935 + 4 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 559522 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 842-56 chr8 120657662 120658189 + 4 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -103328 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 682-110 chr9 95429033 95429250 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -34468 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 1491 chr3 10732515 10733092 + 4 NA Intergenic L1MEc|LINE|L1 31406 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 1263-6 chr3 104168936 104169482 + 4 NA Intergenic Intergenic -645093 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 611-140 chr7 109166493 109166783 + 4 NA Intergenic Intergenic -282051 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 699-87 chr5 110473252 110473472 + 4 NA intron (NM_001039763, intron 12 of 13) L1MA4|LINE|L1 40553 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 1063-18 chr3 70831381 70831711 + 4 NA Intergenic Charlie4a|DNA|hAT-Charlie 233378 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 546-176 chr4 97031538 97031797 + 4 NA Intergenic Intergenic -335259 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 612-99 chr4 36543842 36544064 + 4 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 97947 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 515-140 chr20 6402158 6402525 + 4 NA Intergenic Intergenic -24391 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 674-22 chr12 16919936 16920280 + 4 NA Intergenic L1MB7|LINE|L1 -68639 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 807-36 chr21 18511521 18511755 + 4 NA Intergenic Intergenic -107853 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 638-61 chr19 12070708 12070940 + 4 NA intron (NR_134326, intron 1 of 2) MER31B|LTR|ERV1 6093 NM_001136501 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 476-86 chr14 67182078 67182313 + 4 NA TTS (NM_020806) TTS (NM_020806) -7245 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 826-6 chr1 237375118 237375384 + 4 NA intron (NM_001035, intron 7 of 104) intron (NM_001035, intron 7 of 104) -95868 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 327-172 chr15 68358090 68358280 + 4 NA intron (NM_001004439, intron 6 of 29) L3|LINE|CR1 73978 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 779-46 chr5 170403149 170403555 + 4 NA intron (NR_109899, intron 1 of 2) intron (NR_109899, intron 1 of 2) 13859 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 707-32 chr15 53075102 53075300 + 4 NA Intergenic Intergenic -41164 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 750-62 chr5 178927424 178927635 + 4 NA intron (NM_030613, intron 4 of 4) AluSq2|SINE|Alu -13669 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 783-55 chr4 173635304 173635674 + 4 NA Intergenic L1ME1|LINE|L1 105031 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 295-69 chr11 41566871 41566989 + 4 NA Intergenic Intergenic -107278 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1393 chr2 117260885 117261710 + 4 NA Intergenic L1MEd|LINE|L1 -553394 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 635-63 chr20 62117427 62117647 + 4 NA Intergenic Intergenic -4938 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 514-93 chr14 83215133 83215325 + 4 NA Intergenic L1M1|LINE|L1 572597 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 693-34 chr15 26236468 26236668 + 4 NA Intergenic L1MA4|LINE|L1 120755 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 453-80 chr15 87825569 87825758 + 4 NA Intergenic MIRb|SINE|MIR 120605 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 562-59 chr14 63166867 63167172 + 4 NA Intergenic L1MA7|LINE|L1 -37424 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 974-7 chr2 41387624 41388018 + 4 NA Intergenic LTR16E2|LTR|ERVL -489734 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 536-204 chr7 8077633 8077813 + 4 NA intron (NM_138426, intron 6 of 7) MIRb|SINE|MIR 108927 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 676-84 chr3 88974811 88975086 + 4 NA Intergenic L1MA4A|LINE|L1 -132673 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1223-14 chr8 122010460 122010940 + 4 NA Intergenic Intergenic -369260 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 742-15 chr11 29374571 29374983 + 4 NA Intergenic L1M4b|LINE|L1 -219636 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 553-33 chr11 87232697 87232934 + 4 NA intron (NR_033149, intron 4 of 13) L1MEc|LINE|L1 194881 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 1413-2 chr5 41389451 41390238 + 4 NA intron (NM_001005473, intron 1 of 2) L1ME1|LINE|L1 120757 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 484-44 chr11 116315042 116315269 + 4 NA Intergenic L1MEg|LINE|L1 -324267 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 639-116 chr8 103313915 103314176 + 4 NA intron (NM_001317796, intron 2 of 5) MER102c|DNA|hAT-Charlie 5067 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 521-46 chr11 48196741 48197035 + 4 NA Intergenic L1M3de|LINE|L1 -19922 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 668-35 chr16 26139265 26139489 + 4 NA Intergenic Intergenic 114140 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 983-26 chr8 139510467 139510996 + 4 NA Intergenic Intergenic 192392 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 576-184 chrX 9246475 9246694 + 4 NA Intergenic AluSz|SINE|Alu -212457 NM_205849 171483 Hs.733351 NM_173696 ENSG00000177138 FAM9B TEX39B family with sequence similarity 9 member B protein-coding 1351-4 chr6 130593180 130593824 + 4 NA Intergenic L2b|LINE|L2 156385 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 537-14 chr1 176366584 176366913 + 4 NA Intergenic Intergenic -96427 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 850-38 chr5 152541182 152541616 + 4 NA Intergenic Intergenic -136120 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 576-75 chr19 37429232 37429499 + 4 NA intron (NM_152484, intron 3 of 5) MLT1J|LTR|ERVL-MaLR 38079 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 864-5 chr10 93158292 93158587 + 4 NA Intergenic Intergenic 84546 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 580-82 chr2 72256350 72256556 + 4 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -108591 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 653-51 chr17 68279275 68279557 + 4 NA intron (NM_004694, intron 1 of 5) intron (NM_004694, intron 1 of 5) 11711 NM_004694 9120 Hs.42645 NM_004694 ENSG00000108932 SLC16A6 MCT6|MCT7 solute carrier family 16 member 6 protein-coding 659-123 chr8 130730661 130730908 + 4 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -287110 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 469-165 chr21 27395525 27395651 + 4 NA Intergenic Intergenic -326791 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1081-4 chr14 71830716 71831349 + 4 NA Intergenic L1MD2|LINE|L1 -101139 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 289-468 chr8 120194528 120194696 + 4 NA intron (NM_021110, intron 5 of 47) intron (NM_021110, intron 5 of 47) 69510 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 626-44 chr16 79488904 79489145 + 4 NA Intergenic Intergenic 111713 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 785-14 chr10 92412350 92412615 + 4 NA Intergenic MER21-int|LTR|ERVL -6179 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 656-21 chr10 51328600 51328788 + 4 NA intron (NM_001098512, intron 2 of 17) L1MA8|LINE|L1 29121 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 751-69 chr6 50483930 50484149 + 4 NA Intergenic L1MD1|LINE|L1 -229505 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 433-305 chr9 104894633 104894829 + 4 NA intron (NM_005502, intron 2 of 49) intron (NM_005502, intron 2 of 49) 33424 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 388-329 chr7 83296829 83297013 + 4 NA Intergenic Intergenic -134037 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 1048-22 chr7 399584 400121 + 4 NA Intergenic L1MEc|LINE|L1 20427 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 608-59 chr18 29987811 29988019 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR -310995 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 757-4 chr1 213194436 213194731 + 4 NA intron (NR_146209, intron 8 of 11) MER1B|DNA|hAT-Charlie 143342 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 1035-6 chr18 13277808 13278362 + 4 NA promoter-TSS (NM_181481) promoter-TSS (NM_181481) -20 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 861-39 chr9 80343673 80344036 + 4 NA Intergenic L1MA4|LINE|L1 368831 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 972-14 chr3 4616154 4616633 + 4 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 123045 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 1247-6 chr8 4850423 4850952 + 4 NA intron (NM_033225, intron 1 of 69) L2c|LINE|L2 144227 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 664-28 chr12 10307487 10307688 + 4 NA promoter-TSS (NR_147040) promoter-TSS (NR_147040) -231 NM_007334 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 784-62 chr8 86259503 86259901 + 4 NA Intergenic Intergenic -29321 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 684-31 chr13 79070846 79071065 + 4 NA Intergenic Intergenic -230905 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 277-164 chr18 59882477 59882546 + 4 NA Intergenic Intergenic -17485 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 352-48 chr10 61279873 61279984 + 4 NA Intergenic MIR3|SINE|MIR -172711 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 893-7 chr11 5702122 5702388 + 4 NA intron (NM_001199573, intron 4 of 7) (AT)n|Simple_repeat|Simple_repeat 12465 NM_001199573 10346 Hs.501778 NM_006074 ENSG00000132274 TRIM22 GPSTAF50|RNF94|STAF50 tripartite motif containing 22 protein-coding 380-195 chr2 129583332 129583465 + 4 NA Intergenic L1M3|LINE|L1 294093 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 798-31 chr2 211586158 211586541 + 4 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 840011 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 550-17 chr1 231684654 231684829 + 4 NA intron (NM_001164556, intron 1 of 4) intron (NM_001164556, intron 1 of 4) 57926 NM_001164556 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 707-27 chr14 83523714 83524132 + 4 NA Intergenic Intergenic 881291 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 791-73 chr9 27178096 27178441 + 4 NA intron (NM_001290077, intron 6 of 21) L1MA9|LINE|L1 69127 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 528-270 chrX 125902381 125902584 + 4 NA Intergenic L1PA16|LINE|L1 -207280 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 756-21 chr19 36519174 36519512 + 4 NA intron (NM_001012756, intron 2 of 3) HAL1|LINE|L1 8928 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 589-158 chr8 92445848 92446092 + 4 NA Intergenic Intergenic 209524 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 681-47 chr3 936735 937040 + 4 NA Intergenic L1MB3|LINE|L1 -156137 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 557-18 chr10 36606078 36606236 + 4 NA Intergenic Intergenic -519700 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 651-107 chr7 48345101 48345406 + 4 NA intron (NM_152701, intron 29 of 61) Tigger3b|DNA|TcMar-Tigger 173795 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 722-71 chr7 80484922 80485129 + 4 NA intron (NM_001102386, intron 3 of 7) L2|LINE|L2 27039 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 653-89 chr3 112802657 112802954 + 4 NA intron (NR_149027, intron 1 of 2) intron (NR_149027, intron 1 of 2) 327 NR_149027 100129297 Hs.570655 NR_149026 CD200R1L-AS1 - CD200R1L antisense RNA 1 ncRNA 546-187 chr5 31968926 31969089 + 4 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -32848 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 684-65 chr20 19066068 19066375 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -146421 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 635-7 chr1 160756111 160756434 + 4 NA Intergenic Intergenic 17025 NM_021181 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 732-28 chr15 87055426 87055658 + 4 NA Intergenic L1PA15|LINE|L1 -67116 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 811-47 chr8 88573703 88573965 + 4 NA Intergenic Intergenic -246351 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 1022-5 chr10 69536042 69536396 + 4 NA Intergenic Intergenic 37203 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 513-104 chr17 73462305 73462605 + 4 NA intron (NM_001144952, intron 3 of 44) intron (NM_001144952, intron 3 of 44) -51228 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 880-11 chr15 81058720 81059044 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR 57959 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 695-110 chr9 82714191 82714522 + 4 NA Intergenic Intergenic 348786 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 783-54 chr4 69069904 69070271 + 4 NA intron (NM_001349568, intron 1 of 6) intron (NM_001349568, intron 1 of 6) 18823 NM_001349568 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 768-30 chr2 156222920 156223336 + 4 NA intron (NR_110250, intron 1 of 3) L1PA11|LINE|L1 31803 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 494-63 chr14 51244513 51244733 + 4 NA intron (NM_030755, intron 2 of 7) intron (NM_030755, intron 2 of 7) 4376 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 716-38 chr2 209646063 209646245 + 4 NA intron (NM_001039538, intron 4 of 14) AluJb|SINE|Alu 66475 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 515-196 chr5 2107938 2108189 + 4 NA Intergenic Intergenic 204138 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 573-16 chr1 212537794 212538049 + 4 NA Intergenic Intergenic -7773 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 288-386 chr6 156190123 156190232 + 4 NA Intergenic Intergenic -188573 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 737-40 chr19 37893524 37893795 + 4 NA exon (NM_001291088, exon 4 of 6) exon (NM_001291088, exon 4 of 6) 12935 NM_001291088 83889 Hs.664194 NM_031951 ENSG00000171804 WDR87 NYD-SP11 WD repeat domain 87 protein-coding 775-29 chr15 61384808 61385270 + 4 NA Intergenic L2a|LINE|L2 -155737 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 442-199 chr3 152636092 152636258 + 4 NA Intergenic Intergenic -198956 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 474-285 chr8 78831948 78832154 + 4 NA Intergenic MER63A|DNA|hAT-Blackjack -5478 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 626-154 chrX 31288672 31288906 + 4 NA intron (NM_000109, intron 62 of 78) intron (NM_000109, intron 62 of 78) -21835 NM_004015 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 989-12 chr2 81808123 81808562 + 4 NA Intergenic Intergenic -341396 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 638-139 chr6 136731271 136731449 + 4 NA intron (NM_005923, intron 1 of 29) MLT1D|LTR|ERVL-MaLR -52687 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 456-231 chr4 112443773 112443947 + 4 NA Intergenic L1M5|LINE|L1 -71519 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 921-31 chrX 75387705 75388083 + 4 NA intron (NM_001146256, intron 9 of 10) L1M1|LINE|L1 113809 NM_145052 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 590-63 chr17 33997582 33997837 + 4 NA intron (NM_001094, intron 1 of 9) L1M1|LINE|L1 159097 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 720-82 chr7 52185038 52185364 + 4 NA Intergenic L1M5|LINE|L1 -791945 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 745-28 chr2 53029191 53029602 + 4 NA Intergenic Intergenic -326781 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 717-58 chr3 153791481 153791728 + 4 NA Intergenic Intergenic -29078 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 684-128 chr9 2220732 2221080 + 4 NA Intergenic L1MC1|LINE|L1 62450 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 429-40 chr10 85230511 85230718 + 4 NA Intergenic Intergenic -31676 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 200-13 chr1 175348233 175348303 + 4 NA intron (NM_003285, intron 18 of 22) L1M5|LINE|L1 -155281 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 688-50 chr15 80328046 80328350 + 4 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 13607 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 963-6 chr11 106662088 106662526 + 4 NA Intergenic Intergenic 356169 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 691-26 chr14 72030344 72030719 + 4 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 97004 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 885-12 chr2 213603594 213603946 + 4 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -154297 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 650-112 chr7 13760686 13760962 + 4 NA Intergenic MER57B2|LTR|ERV1 225690 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 599-103 chr5 2547369 2547631 + 4 NA Intergenic Intergenic -165091 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 470-216 chr5 61761281 61761521 + 4 NA Intergenic L1ME1|LINE|L1 -25703 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 1468-4 chr5 66486717 66487317 + 4 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 24587 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 860-39 chr5 84860231 84860677 + 4 NA Intergenic AluY|SINE|Alu -475574 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 610-141 chr5 146377002 146377241 + 4 NA Intergenic Intergenic 38282 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 938-23 chr5 56375966 56376343 + 4 NA Intergenic Intergenic 105615 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 461-24 chr10 19710988 19711181 + 4 NA non-coding (NR_120646, exon 5 of 5) non-coding (NR_120646, exon 5 of 5) 17466 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 539-110 chr2 67760259 67760540 + 4 NA Intergenic Intergenic 65163 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 583-51 chr13 76221633 76221818 + 4 NA Intergenic L3|LINE|CR1 -286593 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 750-3 chr1 166220896 166221174 + 4 NA Intergenic L1PA15|LINE|L1 -54280 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 619-126 chr8 55169716 55169943 + 4 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 67801 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 804-65 chr7 67573620 67573984 + 4 NA Intergenic LTR19B|LTR|ERV1 237826 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 849-49 chr8 135198918 135199354 + 4 NA Intergenic Intergenic -34995 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 847-34 chr4 77555442 77555758 + 4 NA intron (NM_006419, intron 1 of 4) L1ME1|LINE|L1 43847 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 1248-3 chr16 68598327 68598787 + 4 NA Intergenic AluSx|SINE|Alu -46753 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 295-25 chr1 182159588 182159716 + 4 NA Intergenic L1MB3|LINE|L1 -97940 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 681-63 chr5 3981889 3982265 + 4 NA Intergenic Intergenic 386245 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 594-88 chr21 26348047 26348350 + 4 NA Intergenic Intergenic -45437 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 495-164 chr3 174125652 174125876 + 4 NA intron (NM_001365928, intron 4 of 6) L2c|LINE|L2 -204968 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 716-36 chr2 136731465 136731804 + 4 NA Intergenic MER89-int|LTR|ERV1 -33911 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 707-105 chr8 92333583 92333927 + 4 NA Intergenic L1PA11|LINE|L1 -230370 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 505-102 chr15 81089880 81090163 + 4 NA Intergenic Intergenic -44249 NM_173528 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 1129-4 chr14 68661925 68662551 + 4 NA intron (NM_001321818, intron 10 of 10) L3|LINE|CR1 -33451 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 1219-2 chr1 88005636 88005963 + 4 NA Intergenic MIR|SINE|MIR -634144 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 786-10 chr10 104135633 104136033 + 4 NA intron (NM_025145, intron 34 of 37) L1MB5|LINE|L1 13662 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 609-24 chr12 68592177 68592418 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -18602 NM_015646 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 348-244 chr2 178221400 178221549 + 4 NA intron (NM_001201480, intron 1 of 25) intron (NM_001201480, intron 1 of 25) 26962 NM_001201481 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 1281-7 chr8 102723964 102724499 + 4 NA Intergenic AluJr|SINE|Alu 67983 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 807-7 chr10 117027875 117028301 + 4 NA intron (NM_001258300, intron 2 of 17) MSTA-int|LTR|ERVL-MaLR -22511 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 1444-4 chr2 114432543 114433439 + 4 NA Intergenic HAL1|LINE|L1 -9650 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 450-245 chr5 89579175 89579346 + 4 NA Intergenic L2|LINE|L2 437460 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 766-31 chr19 29355842 29356164 + 4 NA intron (NR_040029, intron 9 of 9) L1M4|LINE|L1 -142852 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 591-154 chr7 31211177 31211333 + 4 NA Intergenic AluJb|SINE|Alu 129471 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 870-35 chr6 71811058 71811477 + 4 NA Intergenic L1M2|LINE|L1 -75436 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 388-267 chr5 13063585 13063751 + 4 NA Intergenic Intergenic -30782 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 734-32 chr2 19620584 19621014 + 4 NA Intergenic L1PB1|LINE|L1 -248055 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 509-122 chr2 144775826 144776069 + 4 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 107980 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 774-21 chr12 133109400 133109691 + 4 NA Intergenic Intergenic 20928 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 626-33 chr12 46847526 46847749 + 4 NA Intergenic L1MA8|LINE|L1 -21640 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 409-44 chr11 106396382 106396562 + 4 NA Intergenic Intergenic 145065 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 616-139 chr5 173559946 173560272 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -19525 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 1721-3 chr8 134673083 134673854 + 4 NA intron (NM_020863, intron 1 of 15) intron (NM_020863, intron 1 of 15) 23087 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 661-55 chr2 227582685 227582985 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR 35820 NR_149019 729968 Hs.689550 NR_149019 LOC729968 - spore coat protein SP96 ncRNA 1561-2 chr2 79335045 79335904 + 4 NA Intergenic Intergenic 165370 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 510-191 chr3 168785462 168785676 + 4 NA intron (NR_021485, intron 6 of 15) L1MC1|LINE|L1 -116376 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 434-6 chr1 72249504 72249625 + 4 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 32975 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 592-160 chr7 43160392 43160674 + 4 NA intron (NR_135295, intron 5 of 6) L1MD|LINE|L1 9638 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 364-317 chr4 130128620 130128755 + 4 NA Intergenic L1MEg|LINE|L1 -247674 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 705-19 chr12 5644765 5645072 + 4 NA intron (NM_001278596, intron 16 of 25) L1ME3B|LINE|L1 150786 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 536-184 chr5 58548538 58548751 + 4 NA intron (NR_109904, intron 1 of 3) MIR|SINE|MIR 9599 NR_109904 101928600 Hs.694699 NR_109904 ENSG00000250127 LINC02108 - long intergenic non-protein coding RNA 2108 ncRNA 1018-2 chr1 90879220 90879733 + 4 NA Intergenic L1M4|LINE|L1 27717 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 1444-6 chr6 26646285 26646757 + 4 NA intron (NM_001242799, intron 1 of 2) L1MC1|LINE|L1 13225 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 670-37 chr14 81903678 81903985 + 4 NA Intergenic L1MA8|LINE|L1 -160693 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 632-115 chr8 69060717 69060907 + 4 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 43378 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 1188-10 chr7 54026650 54027156 + 4 NA Intergenic AluJb|SINE|Alu -214972 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1132-13 chr8 131452806 131453308 + 4 NA Intergenic L1MC|LINE|L1 -412148 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 616-182 chrX 48059443 48059643 + 4 NA exon (NM_001282201, exon 5 of 5) exon (NM_001282201, exon 5 of 5) 3233 NR_046742 100874120 Hs.618606 NR_046742 ZNF630-AS1 - ZNF630 antisense RNA 1 ncRNA 560-74 chr18 71262627 71262842 + 4 NA Intergenic MIRb|SINE|MIR 316222 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 892-28 chr3 44487221 44487643 + 4 NA Intergenic Intergenic -9762 NM_001369454 353274 Hs.250481 NM_181489 ENSG00000185219 ZNF445 ZKSCAN15|ZNF168|ZSCAN47 zinc finger protein 445 protein-coding 1395-2 chr2 34683864 34684553 + 4 NA intron (NR_126404, intron 1 of 2) intron (NR_126404, intron 1 of 2) 6651 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 1247-7 chr8 87985439 87986036 + 4 NA Intergenic Intergenic -111722 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 1577-4 chr22 42040858 42041740 + 4 NA Intergenic AluSc|SINE|Alu 29513 NM_000262 4668 Hs.75372 NM_000262 ENSG00000198951 NAGA D22S674|GALB alpha-N-acetylgalactosaminidase protein-coding 783-78 chr8 138436891 138437295 + 4 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 60168 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 562-188 chr6 14170384 14170684 + 4 NA Intergenic L1MB7|LINE|L1 52762 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 526-116 chr2 31830528 31830798 + 4 NA Intergenic AluSz|SINE|Alu -26683 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 980-7 chr14 42964931 42965353 + 4 NA Intergenic Intergenic 1358286 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 808-33 chr20 54000664 54001047 + 4 NA intron (NM_001366297, intron 4 of 8) L1MEc|LINE|L1 58165 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 684-45 chr18 2049412 2049694 + 4 NA Intergenic (TGTTTTT)n|Simple_repeat|Simple_repeat 521952 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 720-80 chr7 394489 394855 + 4 NA Intergenic L1M4b|LINE|L1 15247 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 663-105 chr7 46468374 46468654 + 4 NA Intergenic HUERS-P3-int|LTR|ERV1 228608 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 622-23 chr12 58595348 58595645 + 4 NA intron (NR_126341, intron 1 of 1) intron (NR_126341, intron 1 of 1) 3794 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 906-20 chr15 68857278 68857699 + 4 NA Intergenic L1MDa|LINE|L1 -36593 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 500-76 chr14 33406726 33407013 + 4 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -302068 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 672-45 chr18 43302341 43302618 + 4 NA Intergenic Intergenic -24989 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 1029-8 chr15 27788673 27789089 + 4 NA intron (NM_001300984, intron 22 of 22) L1M4a2|LINE|L1 310434 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 590-81 chr2 82034521 82034791 + 4 NA Intergenic Intergenic -567710 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1185 chr10 76501358 76501953 + 4 NA intron (NM_001305581, intron 6 of 6) L1PA16|LINE|L1 -386389 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 610-64 chr16 65419045 65419314 + 4 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 157121 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 702-77 chr5 38304663 38304977 + 4 NA intron (NM_152403, intron 1 of 21) HAL1|LINE|L1 -13834 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 692-94 chr7 121508886 121509195 + 4 NA Intergenic HERVIP10B3-int|LTR|ERV1 -112672 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 453-36 chr11 38228294 38228517 + 4 NA Intergenic L2a|LINE|L2 289804 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 810-19 chr19 36812695 36813074 + 4 NA intron (NR_040028, intron 2 of 3) L1ME3G|LINE|L1 15321 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 869-43 chr7 7448512 7448852 + 4 NA intron (NM_001037763, intron 18 of 34) L1ME1|LINE|L1 87191 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 531-79 chr16 52691649 52691857 + 4 NA Intergenic L1MEg|LINE|L1 -84778 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 513-135 chr2 112460241 112460377 + 4 NA Intergenic Intergenic -21847 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 779-30 chr2 17947912 17948295 + 4 NA Intergenic Intergenic 69436 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 599-8 chr1 191295722 191295997 + 4 NA Intergenic L1M2|LINE|L1 -67361 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 246-120 chr14 69290764 69290865 + 4 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 30656 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 701-63 chr3 88916666 88916942 + 4 NA Intergenic Intergenic -190817 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 528-247 chr8 74405942 74406196 + 4 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 55666 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 913-25 chr20 53083986 53084276 + 4 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -101152 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 926-6 chr11 56414511 56414939 + 4 NA TTS (NR_145506) TTS (NR_145506) 2128 NM_001348230 79482 NM_001348230 ENSG00000272987 OR5AL1 OR5AL1P olfactory receptor family 5 subfamily AL member 1 (gene/pseudogene) protein-coding 662-101 chr8 121849982 121850162 + 4 NA Intergenic Intergenic -208632 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 856-14 chr14 45538771 45539326 + 4 NA Intergenic Intergenic 176554 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 1222-5 chr2 63457089 63457565 + 4 NA intron (NR_148704, intron 7 of 18) L1MA4A|LINE|L1 -19320 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 764-53 chr4 72135846 72136145 + 4 NA intron (NM_053036, intron 2 of 3) L1MA3|LINE|L1 96863 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 664-113 chr8 52088873 52089091 + 4 NA Intergenic Intergenic -105380 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 603-73 chr19 31861446 31861830 + 4 NA Intergenic L1MA8|LINE|L1 -164224 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 943-27 chr8 113706668 113707152 + 4 NA Intergenic Intergenic -269971 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 1147-4 chr4 142604096 142604501 + 4 NA intron (NM_003866, intron 2 of 26) L1MA4A|LINE|L1 242237 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 246-34 chr10 25562569 25562659 + 4 NA intron (NM_020752, intron 6 of 10) L1MDa|LINE|L1 -89098 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 724-83 chr6 56026627 56026932 + 4 NA Intergenic LTR16|LTR|ERVL 64883 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 1040-13 chr2 126595561 126595889 + 4 NA Intergenic L1ME1|LINE|L1 -60210 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 1233-8 chr8 126715438 126715982 + 4 NA Intergenic L3|LINE|CR1 -157232 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 645-137 chr9 84749641 84750022 + 4 NA intron (NM_001018064, intron 11 of 17) MIR|SINE|MIR 43930 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 450-159 chr2 199708154 199708350 + 4 NA Intergenic L1MEc|LINE|L1 100184 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 713-58 chr3 147034810 147035102 + 4 NA Intergenic L1MCa|LINE|L1 113033 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 728-64 chr3 190285980 190286244 + 4 NA Intergenic L1M1|LINE|L1 36334 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 808-34 chr21 14793593 14793991 + 4 NA Intergenic Intergenic 124876 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 1050-9 chr21 28366501 28366988 + 4 NA Intergenic L1M3d|LINE|L1 -138077 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 746-62 chr5 107093519 107093777 + 4 NA Intergenic L1ME4a|LINE|L1 -82634 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 833-14 chr2 37359969 37360348 + 4 NA intron (NM_012413, intron 3 of 6) intron (NM_012413, intron 3 of 6) 15528 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 514-255 chr6 140464090 140464259 + 4 NA Intergenic Intergenic -219640 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 927-29 chrX 58371108 58371542 + 4 NA Intergenic ALR/Alpha|Satellite|centr -460692 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 1152-8 chr5 105648000 105648359 + 4 NA Intergenic L1M2|LINE|L1 548705 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 911-25 chr7 5100907 5101317 + 4 NA Intergenic L1MA5|LINE|L1 29052 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 724-54 chr3 98434872 98435138 + 4 NA Intergenic Intergenic -34475 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 769-51 chr5 58418694 58419019 + 4 NA Intergenic Intergenic 41230 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 713-16 chr11 99918550 99918817 + 4 NA intron (NM_001243270, intron 6 of 23) L2a|LINE|L2 362538 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 670-32 chr12 132959478 132959798 + 4 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -3332 NM_183238 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 1198-5 chr17 61090149 61090833 + 4 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 277213 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 827-38 chr4 92928209 92928638 + 4 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 624024 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 1317-4 chr14 65460077 65460495 + 4 NA intron (NM_004480, intron 2 of 9) LTR40a|LTR|ERVL -10816 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 1087-2 chr11 101205291 101205755 + 4 NA Intergenic Intergenic -75710 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 954-34 chr3 134104050 134104432 + 4 NA Intergenic Intergenic -46593 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 614-85 chr3 102324900 102325078 + 4 NA Intergenic LTR40a|LTR|ERVL -110026 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 491-72 chr14 72352201 72352393 + 4 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -164523 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 670-58 chr2 34516283 34516651 + 4 NA Intergenic Intergenic -161090 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 818-63 chr9 74249635 74250145 + 4 NA Intergenic L1MB8|LINE|L1 -121641 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 778-19 chr12 47474679 47474983 + 4 NA Intergenic L1PA15-16|LINE|L1 59823 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 701-77 chr5 125531874 125532128 + 4 NA intron (NR_109887, intron 3 of 3) L1ME1|LINE|L1 38740 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 682-73 chr4 57842600 57842829 + 4 NA Intergenic Intergenic 416842 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 1143-9 chr21 23316231 23316695 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 68372 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 643-34 chr14 72273115 72273373 + 4 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -243576 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 621-122 chr7 125460924 125461126 + 4 NA Intergenic Intergenic -196734 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 642-104 chr7 81165548 81165902 + 4 NA Intergenic Intergenic -243336 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 1045-8 chr2 31691623 31692179 + 4 NA Intergenic HUERS-P3-int|LTR|ERV1 -110963 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 512-75 chr14 42013795 42014100 + 4 NA Intergenic Intergenic 407091 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1206-2 chr12 37857520 37857944 + 4 NA Intergenic ALR/Alpha|Satellite|centr -459042 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1852-2 chr11 54778213 54779199 + 4 NA Intergenic ALR/Alpha|Satellite|centr 71874 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 821-8 chr10 62343387 62343748 + 4 NA intron (NR_104162, intron 3 of 3) MER41-int|LTR|ERV1 -30590 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 361-195 chr19 36815913 36816131 + 4 NA intron (NR_040028, intron 2 of 3) AluSq|SINE|Alu 18459 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 1149-11 chr8 142369360 142369816 + 4 NA intron (NM_001366903, intron 1 of 9) L1MCc|LINE|L1 33594 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 928-3 chr12 125505850 125506177 + 4 NA intron (NM_052907, intron 3 of 8) L1ME1|LINE|L1 -116439 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 496-173 chr3 34167814 34168016 + 4 NA Intergenic L1M4b|LINE|L1 369285 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 774-37 chr19 3796524 3796765 + 4 NA intron (NM_002378, intron 1 of 13) intron (NM_002378, intron 1 of 13) 5155 NM_002378 4145 Hs.631845 NM_002378 ENSG00000007264 MATK CHK|CTK|HHYLTK|HYL|HYLTK|Lsk megakaryocyte-associated tyrosine kinase protein-coding 660-74 chr4 133057381 133057645 + 4 NA Intergenic Intergenic 91603 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 318-423 chr4 173641464 173641558 + 4 NA Intergenic L1M3|LINE|L1 111053 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 510-49 chr11 76084009 76084265 + 4 NA intron (NM_003369, intron 13 of 14) intron (NM_003369, intron 13 of 14) 122365 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 800-15 chr11 87471407 87471664 + 4 NA Intergenic MLT1G|LTR|ERVL-MaLR 247876 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 245-363 chr9 11711010 11711129 + 4 NA Intergenic L1MDa|LINE|L1 -982316 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 662-98 chr8 79816660 79816838 + 4 NA intron (NR_110954, intron 3 of 5) AluSx|SINE|Alu 48607 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 791 chr1 40461167 40461491 + 4 NA intron (NM_001369565, intron 5 of 5) intron (NM_001369565, intron 5 of 5) 10853 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 847-27 chr2 14245483 14245851 + 4 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 155291 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 459-13 chr1 115065643 115065772 + 4 NA intron (NM_005725, intron 2 of 7) L1MA4|LINE|L1 23793 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 834-33 chr4 58647880 58648222 + 4 NA Intergenic Intergenic -111723 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 573-173 chr6 137182806 137183005 + 4 NA Intergenic MER41-int|LTR|ERV1 -9261 NM_052962 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 375-142 chr15 53393367 53393538 + 4 NA Intergenic Intergenic 147400 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 1986 chr7 42666242 42667193 + 4 NA intron (NR_110833, intron 2 of 2) HAL1|LINE|L1 39730 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 606-32 chr11 115115689 115115938 + 4 NA Intergenic L1MB4|LINE|L1 -217764 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 643-8 chr10 13024919 13025161 + 4 NA intron (NM_001282658, intron 5 of 6) MLT1H2|LTR|ERVL-MaLR -23327 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 954-20 chr19 36894683 36895167 + 4 NA intron (NM_001037232, intron 5 of 5) L1M2|LINE|L1 21114 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 739-34 chr2 44520421 44520831 + 4 NA intron (NM_024766, intron 3 of 10) MIRc|SINE|MIR 158679 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 643-130 chr8 113548820 113549053 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -111997 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 724-67 chr5 20560823 20561062 + 4 NA intron (NM_001349558, intron 1 of 15) L1MC1|LINE|L1 14771 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 576-11 chr1 222171295 222171606 + 4 NA Intergenic L1PA16|LINE|L1 -192930 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 642-79 chr4 32392683 32392989 + 4 NA Intergenic Intergenic 41798 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 695-45 chr19 33971262 33971478 + 4 NA Intergenic L1MEc|LINE|L1 174500 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 642-5 chr1 181829366 181829777 + 4 NA Intergenic L1M4c|LINE|L1 232141 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 682-87 chr6 42732674 42732893 + 4 NA Intergenic MER21A|LTR|ERVL 5207 NR_037141 442211 Hs.563394 NR_037141 ATP6V0CP3 - ATPase H+ transporting V0 subunit c pseudogene 3 pseudo 1482-2 chr9 28684517 28685233 + 4 NA intron (NM_001354574, intron 2 of 5) L1PA15|LINE|L1 34430 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 643-13 chr10 83150712 83150898 + 4 NA Intergenic L1MC4a|LINE|L1 526284 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 699-71 chr3 75205293 75205527 + 4 NA Intergenic L1MD|LINE|L1 -9066 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 712-65 chr4 67250899 67251170 + 4 NA Intergenic Intergenic 170966 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 480-278 chr7 64153862 64153995 + 4 NA Intergenic Intergenic -53275 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 826-50 chr4 99327018 99327361 + 4 NA Intergenic (AATTAC)n|Simple_repeat|Simple_repeat -5788 NM_001286650 125 Hs.4 NM_000668 ENSG00000196616 ADH1B ADH2|HEL-S-117 alcohol dehydrogenase 1B (class I), beta polypeptide protein-coding 480-230 chr5 33529015 33529158 + 4 NA intron (NM_001324512, intron 21 of 21) intron (NM_001324512, intron 21 of 21) 88310 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 946-28 chr9 99691630 99691979 + 4 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 128085 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 435-174 chr4 128221173 128221403 + 4 NA intron (NR_146772, intron 19 of 19) intron (NR_146772, intron 19 of 19) 66525 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 803-9 chr11 133655596 133656062 + 4 NA Intergenic Intergenic -123328 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 512-218 chr5 66512753 66512920 + 4 NA Intergenic Intergenic -1232 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 544-23 chr10 5149264 5149513 + 4 NA Intergenic LTR49-int|LTR|ERV1 35799 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 683-66 chr5 54341842 54342122 + 4 NA intron (NR_126379, intron 1 of 4) MER2|DNA|TcMar-Tigger 21038 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 571-49 chr14 84740420 84740598 + 4 NA Intergenic Intergenic -531423 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 797-49 chr7 7561926 7562160 + 4 NA intron (NR_110084, intron 2 of 4) L1PA13|LINE|L1 4022 NR_110084 101927391 Hs.223837 NR_110084 LOC101927391 - uncharacterized LOC101927391 ncRNA 798-3 chr1 191405048 191405305 + 4 NA Intergenic L2a|LINE|L2 -176678 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 275-398 chrX 91330847 91330962 + 4 NA Intergenic Intergenic -103935 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 1118-10 chr2 15670325 15670909 + 4 NA Intergenic L1M3|LINE|L1 -20165 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 386-260 chr4 58181236 58181442 + 4 NA Intergenic L1ME1|LINE|L1 354989 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 678-27 chr14 36150645 36150956 + 4 NA intron (NR_049735, intron 3 of 3) L1MC2|LINE|L1 25851 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 344-195 chr18 1062067 1062225 + 4 NA Intergenic L1MA9|LINE|L1 -134153 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 875-7 chr13 82940879 82941280 + 4 NA Intergenic L1MC3|LINE|L1 941314 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 1148-14 chr8 121428320 121428761 + 4 NA Intergenic Intergenic -210806 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 665-24 chr13 22205009 22205354 + 4 NA Intergenic Intergenic -5104 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 665-35 chr15 25074734 25074976 + 4 NA TTS (NR_003325) TTS (NR_003325) 742 NR_003325 100033422 NR_003325 ENSG00000200661 SNORD116-10 HBII-85-10 small nucleolar RNA, C/D box 116-10 snoRNA 1032-19 chr6 40173902 40174375 + 4 NA Intergenic Intergenic 181868 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 1383-2 chr11 19866497 19867160 + 4 NA intron (NM_182964, intron 3 of 37) intron (NM_182964, intron 3 of 37) -106745 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 511-84 chr16 13776527 13776687 + 4 NA Intergenic LTR16A2|LTR|ERVL -143550 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 1566 chr2 43175151 43175710 + 4 NA Intergenic Intergenic 51176 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 1014-9 chr18 6341969 6342596 + 4 NA intron (NM_001365765, intron 1 of 18) L1MA10|LINE|L1 16748 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 732-37 chr18 11360918 11361153 + 4 NA Intergenic MER39|LTR|ERV1 -93443 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 302-128 chr14 60978740 60978863 + 4 NA intron (NM_020810, intron 2 of 4) L2a|LINE|L2 2278 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 1042-8 chr16 17896795 17897245 + 4 NA Intergenic Intergenic -426060 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 380-344 chr6 94475998 94476153 + 4 NA Intergenic L1MA6|LINE|L1 757772 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 708-73 chr7 25545495 25545680 + 4 NA Intergenic Intergenic 117553 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 672-23 chr13 60261432 60261704 + 4 NA intron (NR_047022, intron 1 of 2) LTR9A1|LTR|ERV1 6536 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 1412 chr1 119407937 119408385 + 4 NA Intergenic L1PBa|LINE|L1 -6770 NM_001166120 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 501-34 chr10 125681392 125681573 + 4 NA intron (NM_001128202, intron 1 of 3) L4_C_Mam|LINE|RTE-X 1681 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 673-35 chr15 61782101 61782367 + 4 NA Intergenic L1ME1|LINE|L1 52316 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 535-243 chr8 105384198 105384438 + 4 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 64775 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 984-15 chr6 96714749 96715073 + 4 NA Intergenic Intergenic 122566 NM_001143957 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 1641 chr12 28912859 28913858 + 4 NA Intergenic L1M2|LINE|L1 -235920 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 1490-2 chr12 16958000 16958686 + 4 NA Intergenic Intergenic -30404 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 414-75 chr12 118931253 118931456 + 4 NA Intergenic Intergenic -50187 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 704-43 chr2 110897069 110897318 + 4 NA intron (NM_001371254, intron 10 of 18) L1MDa|LINE|L1 164620 NM_001371254 733-62 chr5 12308937 12309348 + 4 NA Intergenic L1MC|LINE|L1 -265715 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 634-71 chr2 35467022 35467213 + 4 NA Intergenic MIR|SINE|MIR -4288 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 766-65 chr7 91474990 91475375 + 4 NA Intergenic L1M4|LINE|L1 210749 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 1311-6 chr8 118427056 118427840 + 4 NA intron (NM_001349811, intron 3 of 4) L1ME2|LINE|L1 -193553 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 638-144 chr7 6065754 6065930 + 4 NA Intergenic AluSg|SINE|Alu -6613 NM_001134335 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 1339-5 chr20 47916987 47917797 + 4 NA Intergenic Intergenic -65834 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 510-4 chr1 75649628 75649809 + 4 NA Intergenic LTR80A|LTR|ERVL -33555 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 1930 chr12 133059469 133060210 + 4 NA 3' UTR (NM_003428, exon 5 of 5) 3' UTR (NM_003428, exon 5 of 5) -20364 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 690-97 chr8 35962627 35963064 + 4 NA Intergenic L1PA16|LINE|L1 -252525 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 502-275 chr8 126261473 126261725 + 4 NA Intergenic Intergenic -63896 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 799-41 chr3 137578183 137578703 + 4 NA Intergenic L1MC1|LINE|L1 -185872 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 885-29 chr8 134253251 134253580 + 4 NA Intergenic Intergenic -344656 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1078-8 chr3 68701981 68702470 + 4 NA Intergenic MER3|DNA|hAT-Charlie 201588 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 680-22 chr11 21080486 21080714 + 4 NA intron (NM_201551, intron 12 of 18) L1ME4b|LINE|L1 411014 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 791-49 chr3 181024162 181024424 + 4 NA Intergenic L1M4|LINE|L1 -32387 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 644-16 chr12 93865238 93865544 + 4 NA intron (NR_135147, intron 3 of 3) MER2|DNA|TcMar-Tigger 78215 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 880-44 chr7 158119005 158119242 + 4 NA intron (NM_130842, intron 8 of 21) L1MB3|LINE|L1 264538 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 630-82 chr3 35432821 35433042 + 4 NA Intergenic L1MC2|LINE|L1 -38908 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 1340-6 chr2 223255779 223256436 + 4 NA Intergenic L1ME3|LINE|L1 204177 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 1007-4 chr18 64648962 64649427 + 4 NA Intergenic Intergenic -389139 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 782-49 chr4 102111684 102112042 + 4 NA Intergenic L1MA4|LINE|L1 212449 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 586-91 chr20 54371859 54372018 + 4 NA Intergenic L1M2|LINE|L1 -103655 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 657-49 chr2 112869745 112869947 + 4 NA Intergenic Intergenic -33067 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 828-6 chr10 35865815 35866163 + 4 NA Intergenic L1MEi|LINE|L1 87687 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 820-35 chr3 31955982 31956332 + 4 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -25593 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 699-37 chr16 51192934 51193128 + 4 NA intron (NR_039672, intron 5 of 6) LTR16A1|LTR|ERVL -41759 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 803-53 chr7 54213846 54214187 + 4 NA Intergenic L1M1|LINE|L1 -116681 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 838-32 chr7 111795703 111796140 + 4 NA intron (NM_001363540, intron 30 of 52) intron (NM_001363540, intron 30 of 52) -12584 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 687-131 chrX 37391582 37391832 + 4 NA intron (NM_000950, intron 2 of 4) intron (NM_000950, intron 2 of 4) 42343 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 940-10 chr18 62481490 62482011 + 4 NA Intergenic L1PREC2|LINE|L1 -41275 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 573-156 chr5 124989554 124989856 + 4 NA Intergenic Intergenic -47126 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 583-18 chr10 67491221 67491399 + 4 NA intron (NM_001127384, intron 5 of 17) L2c|LINE|L2 -87900 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 954-41 chr5 169027684 169028178 + 4 NA intron (NR_109897, intron 2 of 4) intron (NR_109897, intron 2 of 4) 14704 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 450-232 chr5 11156647 11156797 + 4 NA intron (NM_001288715, intron 11 of 20) intron (NM_001288715, intron 11 of 20) -395488 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 563-75 chr18 11440872 11441107 + 4 NA Intergenic Intergenic -13489 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 792-32 chr2 117265940 117266209 + 4 NA Intergenic Intergenic -548617 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 1104-5 chr2 137703113 137703602 + 4 NA Intergenic L1PA16|LINE|L1 224575 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 368-239 chr2 124378341 124378504 + 4 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 353135 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 562-162 chr4 71544532 71544766 + 4 NA intron (NM_003759, intron 15 of 22) L2a|LINE|L2 205596 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 830-31 chr3 34122722 34123169 + 4 NA Intergenic L1M1|LINE|L1 324315 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 718-97 chr9 78771895 78772239 + 4 NA Intergenic Intergenic 373599 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 498-197 chr4 97964557 97964837 + 4 NA intron (NM_174952, intron 7 of 10) intron (NM_174952, intron 7 of 10) 178779 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 612-53 chr18 75593292 75593601 + 4 NA Intergenic L1MEc|LINE|L1 118957 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 559-28 chr11 115857860 115858091 + 4 NA Intergenic L1PA3|LINE|L1 -97775 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 532-187 chr4 86081068 86081260 + 4 NA intron (NM_001318069, intron 9 of 13) L1ME3E|LINE|L1 -38642 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 535-4 chr1 36651795 36651945 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR -168556 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 864-24 chr20 48233026 48233434 + 4 NA Intergenic L2a|LINE|L2 -126681 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 651-125 chr8 135316991 135317247 + 4 NA Intergenic MIRc|SINE|MIR 82988 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1147-2 chr14 83190494 83190920 + 4 NA Intergenic L1P3|LINE|L1 548075 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 479-53 chr13 109341079 109341289 + 4 NA Intergenic L1MB8|LINE|L1 -59512 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 1450 chr19 58255140 58255782 + 4 NA intron (NM_001320782, intron 6 of 6) AluSq|SINE|Alu -23494 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 358-82 chr11 124801788 124801965 + 4 NA intron (NR_103862, intron 1 of 4) intron (NR_103862, intron 1 of 4) 1448 NR_103862 100507283 Hs.564177 NR_103862 ENSG00000245498 LOC100507283 - uncharacterized LOC100507283 ncRNA 698-71 chr5 117480860 117481091 + 4 NA intron (NR_046089, intron 3 of 5) MLT1A0|LTR|ERVL-MaLR 65463 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 875-31 chr5 147313223 147313616 + 4 NA intron (NM_001112724, intron 4 of 12) L1MC5|LINE|L1 78393 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 799-13 chr12 129590967 129591229 + 4 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 312927 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 990-3 chr12 13007894 13008213 + 4 NA intron (NR_149067, intron 2 of 2) intron (NR_149067, intron 2 of 2) 7611 NR_002774 93164 Hs.593282 NR_002774 ENSG00000183935 HTR7P1 HTR7P 5-hydroxytryptamine receptor 7 pseudogene 1 pseudo 606-30 chr11 109640125 109640475 + 4 NA Intergenic L1ME2|LINE|L1 218110 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 714-41 chr2 189977471 189977663 + 4 NA Intergenic L2a|LINE|L2 85162 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 748-91 chrX 85447560 85447852 + 4 NA Intergenic L1MB7|LINE|L1 -68041 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 1125-15 chr7 34508937 34509420 + 4 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -149040 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 614-148 chr9 77769975 77770170 + 4 NA intron (NM_002072, intron 5 of 6) intron (NM_002072, intron 5 of 6) -121750 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 660-45 chr2 114545874 114546109 + 4 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 84414 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 929-13 chr17 63024421 63024917 + 4 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 58434 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 430-337 chr9 88445892 88446033 + 4 NA intron (NM_006717, intron 2 of 5) L1MEf|LINE|L1 57518 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 475-278 chr8 57835602 57835833 + 4 NA Intergenic L1M4|LINE|L1 89568 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 742-73 chr7 20489249 20489681 + 4 NA Intergenic L1M2|LINE|L1 -126202 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 636-69 chr2 32964946 32965248 + 4 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 18144 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 677-38 chr17 52240401 52240737 + 4 NA Intergenic MIR|SINE|MIR -80552 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 603-130 chr5 45264530 45264784 + 4 NA intron (NM_021072, intron 7 of 7) intron (NM_021072, intron 7 of 7) 431723 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 555-133 chr3 134779957 134780128 + 4 NA Intergenic L1M5|LINE|L1 -15218 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 716-54 chr4 43286068 43286380 + 4 NA Intergenic Intergenic 206319 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 1092-12 chr2 45809036 45809477 + 4 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 157581 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 970-19 chr8 127505390 127505858 + 4 NA Intergenic Intergenic -23485 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 844-39 chr2 205148153 205148615 + 4 NA intron (NM_152526, intron 10 of 21) intron (NM_152526, intron 10 of 21) -534116 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 953-15 chr2 49464421 49464823 + 4 NA Intergenic L1M1|LINE|L1 -310095 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 1016-3 chr12 31849718 31850166 + 4 NA Intergenic MER41-int|LTR|ERV1 37261 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 802-9 chr10 125600109 125600460 + 4 NA intron (NM_001318133, intron 3 of 3) MLT1M|LTR|ERVL-MaLR 25913 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 309-385 chr4 44949450 44949550 + 4 NA Intergenic Intergenic -222866 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 1368-2 chr2 123890797 123891433 + 4 NA Intergenic L1MA2|LINE|L1 134059 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 684-48 chr18 77237329 77237609 + 4 NA Intergenic Intergenic -12379 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 694-90 chr3 118027781 118028046 + 4 NA Intergenic L1MA1|LINE|L1 -336988 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 786-15 chr11 131001710 131002051 + 4 NA Intergenic Intergenic -85393 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 509-152 chr3 100396756 100396972 + 4 NA intron (NM_014820, intron 1 of 11) intron (NM_014820, intron 1 of 11) 4225 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 526-122 chr2 57581022 57581193 + 4 NA Intergenic L1MC5|LINE|L1 -326544 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 708-16 chr11 113625062 113625338 + 4 NA Intergenic Intergenic 81108 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 486-44 chr11 29824638 29824819 + 4 NA Intergenic Intergenic 157665 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 558-223 chr8 129805125 129805300 + 4 NA Intergenic Intergenic -18588 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 1201 chr12 130566173 130566852 + 4 NA intron (NM_001351226, intron 2 of 21) MLT1F1|LTR|ERVL-MaLR 61944 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 1175 chr12 118815710 118816309 + 4 NA Intergenic Intergenic 17527 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 520-318 chr8 142956844 142957104 + 4 NA Intergenic L1MD|LINE|L1 -38854 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 649-122 chr9 95302575 95302812 + 4 NA intron (NM_001243744, intron 1 of 13) (AGCAC)n|Simple_repeat|Simple_repeat 14561 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 791-13 chr11 24106159 24106536 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -390706 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 758-34 chr19 9526256 9526599 + 4 NA 3' UTR (NM_024106, exon 8 of 8) 3' UTR (NM_024106, exon 8 of 8) 12218 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 861-2 chr1 90670454 90670838 + 4 NA Intergenic Intergenic 12896 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 612-12 chr10 20893060 20893344 + 4 NA intron (NM_006393, intron 2 of 27) intron (NM_006393, intron 2 of 27) 4400 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 408-321 chr7 109995402 109995586 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -35281 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 508-131 chr20 31724643 31724972 + 4 NA promoter-TSS (NM_001322239) promoter-TSS (NM_001322239) -844 NM_001322240 598 Hs.516966 NM_001191 ENSG00000171552 BCL2L1 BCL-XL/S|BCL2L|BCLX|Bcl-X|PPP1R52 BCL2 like 1 protein-coding 815-11 chr11 50629353 50629650 + 4 NA Intergenic ALR/Alpha|Satellite|centr 220354 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 527-76 chr14 32653949 32654227 + 4 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -284791 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 1118-20 chr8 86978717 86979171 + 4 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 112529 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 663-66 chr22 46260574 46260865 + 4 NA exon (NM_006071, exon 1 of 1) exon (NM_006071, exon 1 of 1) 2624 NM_006071 10343 Hs.241383 NM_006071 ENSG00000130943 PKDREJ - polycystin family receptor for egg jelly protein-coding 716-24 chr14 62512012 62512363 + 4 NA Intergenic Ricksha|DNA|MULE-MuDR -372214 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 649-21 chr12 118924435 118924652 + 4 NA Intergenic Intergenic -56998 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 764-67 chr7 106509126 106509461 + 4 NA Intergenic Intergenic 151865 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 1018-11 chr14 80291634 80292186 + 4 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -60853 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 402-262 chr5 29576563 29576693 + 4 NA Intergenic L1M4a1|LINE|L1 -180652 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 744-75 chr8 87380575 87380933 + 4 NA intron (NM_173538, intron 10 of 10) L1MB1|LINE|L1 493261 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 871-5 chr11 78612649 78613096 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL -38008 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 522-163 chr22 27970667 27970846 + 4 NA intron (NR_026963, intron 2 of 4) L1ME2|LINE|L1 -50144 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 835-14 chr13 54964900 54965418 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -209295 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 484-36 chr10 117996046 117996239 + 4 NA Intergenic L1M5|LINE|L1 -50679 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 1063-4 chr10 47094006 47094639 + 4 NA Intergenic Intergenic 182600 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 715-3 chr10 57989148 57989420 + 4 NA Intergenic Intergenic 278610 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 499-11 chr1 173006037 173006211 + 4 NA Intergenic L1M1|LINE|L1 44839 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 686-23 chr13 85102200 85102415 + 4 NA intron (NR_126383, intron 1 of 5) L1MB2|LINE|L1 45750 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 433-226 chr5 93843735 93843852 + 4 NA intron (NM_032042, intron 7 of 10) HAL1|LINE|L1 -102193 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 524-162 chr4 30143946 30144098 + 4 NA Intergenic L2a|LINE|L2 -576347 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 554-135 chr20 56997865 56998051 + 4 NA Intergenic Intergenic -215738 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 602-130 chr8 27096251 27096536 + 4 NA Intergenic MLT2B1|LTR|ERVL -47430 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 675-80 chr6 112418862 112419184 + 4 NA Intergenic L1M1|LINE|L1 71693 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 1017-2 chr10 104094992 104095452 + 4 NA Intergenic L1ME1|LINE|L1 -9342 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 988-3 chr11 79385066 79385503 + 4 NA intron (NM_001098816, intron 1 of 33) MER5B|DNA|hAT-Charlie 16825 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 363-350 chr5 18043771 18043964 + 4 NA Intergenic L1M5|LINE|L1 236593 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 444-72 chr15 37047831 37048007 + 4 NA intron (NM_172316, intron 7 of 12) intron (NM_172316, intron 7 of 12) 50777 NM_172315 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 1380 chr2 40414238 40414732 + 4 NA intron (NM_001351483, intron 2 of 8) L3b|LINE|CR1 15819 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 805-47 chr8 79215455 79215827 + 4 NA Intergenic MIRb|SINE|MIR -116547 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 1115-5 chr15 60273944 60274389 + 4 NA Intergenic MIRb|SINE|MIR 123820 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 634-115 chr4 91413592 91413861 + 4 NA intron (NM_001145065, intron 10 of 10) L1MA9|LINE|L1 863576 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 646-13 chr1 232720622 232720876 + 4 NA intron (NR_146922, intron 2 of 2) L1MB3|LINE|L1 2678 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 740-81 chrX 66364211 66364519 + 4 NA Intergenic L1M1|LINE|L1 196615 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 773-13 chr15 97128039 97128382 + 4 NA Intergenic (AATATAA)n|Simple_repeat|Simple_repeat 344775 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 694-80 chr22 27337404 27337704 + 4 NA Intergenic L1ME3G|LINE|L1 26903 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 942-39 chr8 119575426 119575838 + 4 NA intron (NM_001330600, intron 19 of 25) MIRb|SINE|MIR 17376 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 754-22 chr14 84494392 84494677 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR -777398 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 836-43 chr4 92525987 92526333 + 4 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 221761 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 664-41 chr14 77170773 77171030 + 4 NA Intergenic L1MB7|LINE|L1 -10897 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 877-27 chr5 116282630 116283041 + 4 NA intron (NM_001308080, intron 5 of 6) MLT1B|LTR|ERVL-MaLR 27092 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 1078-2 chr17 26814522 26815093 + 4 NA Intergenic Intergenic 274434 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 682-62 chr3 28971088 28971379 + 4 NA Intergenic L1MA4A|LINE|L1 309706 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 927-7 chr17 73653839 73654265 + 4 NA Intergenic HAL1ME|LINE|L1 -9607 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 738-75 chr9 82373740 82373985 + 4 NA Intergenic L1MEg|LINE|L1 385090 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 366-200 chr2 78087861 78088024 + 4 NA promoter-TSS (NR_110287) promoter-TSS (NR_110287) -788 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 500-323 chr9 116380329 116380482 + 4 NA intron (NM_002581, intron 20 of 21) intron (NM_002581, intron 20 of 21) 20201 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 1268-3 chr15 26336941 26337620 + 4 NA Intergenic L1MC5|LINE|L1 221467 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 734-41 chr20 56998658 56998955 + 4 NA Intergenic Intergenic -214890 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 550-247 chr9 124234890 124235121 + 4 NA Intergenic L1MB8|LINE|L1 -22601 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 537-110 chr2 77992515 77992683 + 4 NA intron (NR_110288, intron 1 of 3) L1M5|LINE|L1 -37573 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 1352-3 chr13 92992141 92992600 + 4 NA Intergenic Intergenic -52971 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 1217-5 chr5 20550025 20550650 + 4 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 25376 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 668-116 chrX 31168451 31168626 + 4 NA intron (NM_004023, intron 27 of 30) intron (NM_004023, intron 27 of 30) -96497 NM_031894 53940 Hs.333125 NM_031894 ENSG00000132446 FTHL17 CT38 ferritin heavy chain like 17 protein-coding 1100-4 chr11 50601401 50601814 + 4 NA Intergenic ALR/Alpha|Satellite|centr 192460 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 682-57 chr20 42861940 42862161 + 4 NA intron (NM_133170, intron 2 of 31) Charlie5|DNA|hAT-Charlie -106693 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 1140-11 chr7 25367026 25367669 + 4 NA Intergenic Intergenic -138861 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 821-33 chr3 44571716 44572274 + 4 NA 3' UTR (NM_018651, exon 6 of 6).2 3' UTR (NM_018651, exon 6 of 6).2 -12969 NM_173658 285349 Hs.733134 NM_173658 ENSG00000144792 ZNF660 - zinc finger protein 660 protein-coding 934-27 chr7 4431088 4431502 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -251000 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1160-9 chr5 155986613 155987299 + 4 NA Intergenic Intergenic -339801 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 709-80 chr5 157403516 157403883 + 4 NA intron (NR_136204, intron 1 of 3) L1MA4A|LINE|L1 -56320 NM_001099287 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA like domain containing 4 protein-coding 1090-7 chr21 17559127 17559532 + 4 NA intron (NM_001207063, intron 4 of 4) AluJb|SINE|Alu 46286 NM_001207065 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 613-75 chr21 28175690 28175871 + 4 NA intron (NR_126012, intron 3 of 5) L2b|LINE|L2 52887 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 742-68 chr6 4638790 4639126 + 4 NA Intergenic L1ME3E|LINE|L1 28393 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 740-39 chr2 51148553 51148915 + 4 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 116133 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 599-74 chr21 28755582 28755877 + 4 NA Intergenic L2c|LINE|L2 129638 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 535-226 chr7 41506021 41506309 + 4 NA Intergenic Intergenic -187754 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 716-39 chr2 221913900 221914221 + 4 NA Intergenic Intergenic -339858 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 864-43 chr7 26243032 26243494 + 4 NA Intergenic MIR|SINE|MIR 41518 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 1339-7 chr7 62873677 62874256 + 4 NA Intergenic ALR/Alpha|Satellite|centr 430090 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 668-87 chr5 121330255 121330469 + 4 NA Intergenic Intergenic 7812 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 366-232 chr2 161750508 161750625 + 4 NA intron (NM_001354443, intron 2 of 25) L1M4c|LINE|L1 126150 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 1432-2 chr15 96621801 96622352 + 4 NA Intergenic Intergenic 159578 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 834-14 chr16 3377905 3378267 + 4 NA Intergenic Intergenic -5418 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 600-54 chr19 37791193 37791396 + 4 NA Intergenic MER31A|LTR|ERV1 -11704 NM_152360 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 848-10 chr13 83425134 83425514 + 4 NA Intergenic HAL1|LINE|L1 457069 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 740-58 chr4 27220927 27221389 + 4 NA intron (NR_125921, intron 1 of 5) L1MB1|LINE|L1 3679 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 902-33 chr7 42256368 42256846 + 4 NA Intergenic L1MB8|LINE|L1 -19398 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 632-30 chr15 61234630 61234809 + 4 NA Intergenic Intergenic -5417 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 579-186 chrX 93535629 93535829 + 4 NA Intergenic MIR|SINE|MIR 137849 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 628-100 chr5 9151172 9151648 + 4 NA intron (NM_003966, intron 12 of 22) intron (NM_003966, intron 12 of 22) -97515 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 771-53 chr3 26688075 26688422 + 4 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) -6309 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 643-83 chr4 35561112 35561408 + 4 NA Intergenic Intergenic 682679 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 751-13 chr12 37968875 37969232 + 4 NA Intergenic ALR/Alpha|Satellite|centr -347721 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1343-4 chr14 82948353 82948848 + 4 NA Intergenic Intergenic 305968 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 873-33 chr7 4483887 4484284 + 4 NA Intergenic LOR1a|LTR|ERV1 -198210 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 679-31 chr14 96144044 96144273 + 4 NA Intergenic L1PA15|LINE|L1 -60640 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 760-71 chr7 69207940 69208205 + 4 NA Intergenic Intergenic 389552 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 1112-5 chr11 50484661 50485243 + 4 NA Intergenic ALR/Alpha|Satellite|centr 75805 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 846-6 chr11 54889024 54889488 + 4 NA Intergenic ALR/Alpha|Satellite|centr 182424 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 868-30 chr5 11780972 11781202 + 4 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 123359 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 676-79 chr3 26086917 26087209 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -213368 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 593-154 chr8 127325618 127325909 + 4 NA intron (NR_117099, intron 2 of 3) AluJr|SINE|Alu -74636 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 830-45 chr5 150974845 150975286 + 4 NA Intergenic MIR|SINE|MIR -28481 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 1148-2 chr19 29643050 29643416 + 4 NA Intergenic AluSz6|SINE|Alu -22228 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 722-78 chr8 98649696 98650022 + 4 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 175812 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 610-31 chr11 112410288 112410490 + 4 NA Intergenic Intergenic -71843 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 1103-3 chr12 37727795 37728347 + 4 NA Intergenic ALR/Alpha|Satellite|centr -588703 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 843-8 chr11 39729041 39729466 + 4 NA Intergenic MER39B|LTR|ERV1 563877 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1006-31 chr9 111734130 111734736 + 4 NA intron (NM_173521, intron 10 of 25) intron (NM_173521, intron 10 of 25) 25103 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 920-2 chr1 46819004 46819449 + 4 NA non-coding (NR_135003, exon 12 of 12) non-coding (NR_135003, exon 12 of 12) 20180 NM_001319163 1580 Hs.436317 NM_000779 ENSG00000142973 CYP4B1 CYPIVB1|P-450HP cytochrome P450 family 4 subfamily B member 1 protein-coding 771-72 chr5 127467149 127467520 + 4 NA Intergenic L2a|LINE|L2 -50306 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 709-71 chr4 99346722 99346983 + 4 NA intron (NR_133005, intron 3 of 8) MIR3|SINE|MIR 5894 NR_133005 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 664-87 chr5 61479875 61480170 + 4 NA intron (NM_020928, intron 2 of 13) intron (NM_020928, intron 2 of 13) 147764 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 486-284 chr7 93464139 93464288 + 4 NA intron (NM_001164737, intron 8 of 15) intron (NM_001164737, intron 8 of 15) 18642 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 346-488 chr8 84168332 84168448 + 4 NA Intergenic Intergenic -14397 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 762-37 chr2 128709278 128709614 + 4 NA Intergenic L1M4b|LINE|L1 -155154 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 638-163 chr8 135096393 135096792 + 4 NA Intergenic HAL1|LINE|L1 -137539 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 519-7 chr1 80473320 80473561 + 4 NA Intergenic MamRTE1|LINE|RTE-BovB -62315 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 679-41 chr16 80864648 80864951 + 4 NA intron (NR_131948, intron 1 of 2) L1MD2|LINE|L1 27797 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 627-62 chr20 1066620 1066811 + 4 NA Intergenic L1MEg|LINE|L1 -46514 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 2480 chr2 54925999 54927381 + 4 NA intron (NM_001039753, intron 25 of 40) L3|LINE|CR1 83582 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 610-79 chr19 51912686 51912926 + 4 NA Intergenic Intergenic -7789 NM_023074 65251 Hs.148322 NM_023074 ENSG00000198093 ZNF649 - zinc finger protein 649 protein-coding 771-38 chr2 10294706 10295117 + 4 NA Intergenic MER33|DNA|hAT-Charlie -7993 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 2779 chr5 36482971 36484418 + 4 NA Intergenic Intergenic -122661 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 895-28 chr3 75009378 75009736 + 4 NA Intergenic Intergenic -204919 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 965-9 chr2 137718959 137719393 + 4 NA Intergenic Intergenic 208756 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 684-125 chr8 132270619 132270841 + 4 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -165465 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 534-47 chr11 79000310 79000502 + 4 NA intron (NM_001098816, intron 6 of 33) L1M4a2|LINE|L1 401703 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 546-5 chr1 73561844 73562106 + 4 NA Intergenic L1MA4|LINE|L1 -112704 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 1375-6 chr20 57100039 57100669 + 4 NA Intergenic MSTB|LTR|ERVL-MaLR -113342 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 745-61 chr6 45719984 45720384 + 4 NA Intergenic Intergenic 217413 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 766-75 chr9 113095108 113095350 + 4 NA Intergenic Intergenic 16448 NR_024376 100128385 Hs.99052 NR_024376 ENSG00000225684 FAM225B C9orf110|LINC00256B|NCRNA00256B family with sequence similarity 225 member B ncRNA 758 chr1 40443512 40443724 + 4 NA Intergenic L1M5|LINE|L1 -6446 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 721-58 chr3 157747601 157747968 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger 204440 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 924-40 chr8 127562378 127562829 + 4 NA Intergenic AluJr|SINE|Alu -80464 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 391-86 chr12 133170880 133171059 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie -10526 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 574-57 chr17 71270091 71270332 + 4 NA Intergenic L1MA9|LINE|L1 -68032 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 772-57 chr8 117344953 117345253 + 4 NA Intergenic Intergenic -175610 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 593-163 chr9 91188536 91188717 + 4 NA Intergenic L1M6|LINE|L1 69564 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 636-74 chr2 71993296 71993515 + 4 NA Intergenic Intergenic 154457 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 414-35 chr10 108065159 108065306 + 4 NA intron (NR_125760, intron 1 of 4) intron (NR_125760, intron 1 of 4) 4061 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 1019-19 chr6 27355443 27355883 + 4 NA Intergenic Tigger3|DNA|TcMar-Tigger 15862 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 646-95 chr4 96452988 96453274 + 4 NA intron (NR_147149, intron 2 of 3) L1PA14|LINE|L1 142428 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 983-14 chr4 33576193 33576719 + 4 NA Intergenic L1MCa|LINE|L1 463437 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 585-130 chr5 146987827 146988037 + 4 NA intron (NM_001271900, intron 2 of 10) L1MA6|LINE|L1 68205 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 734-81 chr9 29445773 29446079 + 4 NA Intergenic Intergenic -232325 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 791-69 chr8 123396717 123397141 + 4 NA promoter-TSS (NM_014109) promoter-TSS (NM_014109) -482 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 750-69 chr8 74555911 74556282 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR -7487 NR_049871 100847091 NR_049871 ENSG00000283505 MIR5681B - microRNA 5681b ncRNA 326-272 chr2 163602009 163602100 + 4 NA TTS (NM_001321825) TTS (NM_001321825) 133954 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 730-17 chr14 105121383 105121587 + 4 NA Intergenic MER77B|LTR|ERVL 27338 NR_110546 102723354 Hs.569410 NR_110546 LINC02298 - long intergenic non-protein coding RNA 2298 ncRNA 823-25 chr5 2611064 2611545 + 4 NA Intergenic MLT2C2|LTR|ERVL -101287 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 1313-2 chr10 66226693 66227331 + 4 NA intron (NM_001127384, intron 13 of 17) L1MA5|LINE|L1 655587 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 1027-7 chr19 36740718 36741087 + 4 NA Intergenic AluJb|SINE|Alu 31905 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 356-34 chr1 234779599 234779809 + 4 NA Intergenic LTR49|LTR|ERV1 -19648 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 830-10 chr11 69549230 69549587 + 4 NA Intergenic L1MEd|LINE|L1 63847 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 734-50 chr3 175050827 175051157 + 4 NA intron (NM_207015, intron 1 of 13) L3|LINE|CR1 64250 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 414-109 chr16 65890538 65890723 + 4 NA Intergenic MER5B|DNA|hAT-Charlie -314330 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 1207 chr1 40469858 40470412 + 4 NA Intergenic Intergenic -7155 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 778-64 chr7 53875445 53875676 + 4 NA Intergenic Intergenic -63629 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1123-15 chr5 25132630 25132999 + 4 NA intron (NR_147006, intron 4 of 4) intron (NR_147006, intron 4 of 4) 57842 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 913-27 chr3 88359370 88359890 + 4 NA intron (NM_001368167, intron 2 of 2) L1MA4|LINE|L1 21174 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 967-21 chr6 40065524 40065871 + 4 NA Intergenic Intergenic -131235 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 691-83 chr8 32848252 32848672 + 4 NA Intergenic L1MB3|LINE|L1 126627 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 1612-2 chr8 134749795 134750610 + 4 NA Intergenic L1ME3A|LINE|L1 -37171 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 644-54 chr21 44662503 44662706 + 4 NA intron (NM_144991, intron 1 of 11) L1MCc|LINE|L1 4323 NM_181684 353323 Hs.567902 NM_181684 ENSG00000221864 KRTAP12-2 KAP12.2|KRTAP12.2 keratin associated protein 12-2 protein-coding 910-13 chr14 70490602 70491061 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -7075 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 1962 chr2 82500057 82501078 + 4 NA Intergenic Intergenic -356236 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 836-36 chr22 24860943 24861253 + 4 NA intron (NM_001098498, intron 9 of 23) AluSg7|SINE|Alu 54877 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 662-7 chr1 246454429 246454786 + 4 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -37195 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 659-69 chr3 18191361 18191559 + 4 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 228908 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 515-134 chr2 191481516 191481729 + 4 NA Intergenic L1M4b|LINE|L1 -196450 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 907-2 chr1 208721883 208722400 + 4 NA Intergenic L1MCc|LINE|L1 -6547 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 446-216 chr4 61703277 61703485 + 4 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 458384 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 490-314 chr9 83580920 83581241 + 4 NA Intergenic L1MC5a|LINE|L1 -41969 NM_001256915 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 560-122 chr4 4769830 4769985 + 4 NA intron (NR_125892, intron 2 of 2) MIRb|SINE|MIR 8147 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 554-197 chr7 110556363 110556596 + 4 NA Intergenic L1M2|LINE|L1 -534527 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 528-193 chr5 4329556 4329767 + 4 NA Intergenic Intergenic -443820 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 561-39 chr11 111850172 111850383 + 4 NA intron (NR_147984, intron 8 of 15) intron (NR_147984, intron 8 of 15) 21004 NM_001352416 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 538-139 chr20 58501591 58501782 + 4 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 13252 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 698-52 chr21 24865160 24865383 + 4 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 24721 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 1218 chr1 166464151 166464728 + 4 NA Intergenic L1MA7|LINE|L1 25600 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 619-5 chr1 81895707 81896070 + 4 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 93435 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 626-127 chr7 34626868 34627047 + 4 NA intron (NR_033664, intron 2 of 4) MIRc|SINE|MIR -31261 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 625-81 chr5 43321952 43322124 + 4 NA Intergenic HERVH-int|LTR|ERV1 -8626 NM_002130 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 1013-3 chr16 66285679 66286148 + 4 NA Intergenic L1MB2|LINE|L1 -80778 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 1327-6 chr21 30012925 30013527 + 4 NA Intergenic Intergenic -73174 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 777-65 chr7 42778655 42778960 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -72360 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 615-101 chr4 170231114 170231352 + 4 NA intron (NR_125889, intron 1 of 2) MIR3|SINE|MIR 4642 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 613-27 chr12 58680773 58681004 + 4 NA intron (NR_120452, intron 1 of 7) L1MA4A|LINE|L1 89186 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 1102-13 chr5 94640018 94640472 + 4 NA intron (NM_032290, intron 4 of 20) L1MCc|LINE|L1 21576 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 799-50 chr7 24779128 24779396 + 4 NA Intergenic Intergenic -21323 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 612-56 chr19 53355670 53355956 + 4 NA 3' UTR (NM_138374, exon 4 of 4) 3' UTR (NM_138374, exon 4 of 4) -9892 NR_145445 170958 Hs.352638 NM_001348156 ENSG00000203326 ZNF525 - zinc finger protein 525 protein-coding 639-11 chr10 23254865 23255117 + 4 NA intron (NM_001365862, intron 10 of 15) intron (NM_001365862, intron 10 of 15) 62679 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 490-159 chr2 172664848 172665048 + 4 NA Intergenic L1MC4|LINE|L1 -70897 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 2263 chr10 98595676 98596812 + 4 NA intron (NM_021828, intron 9 of 11) L1MA8|LINE|L1 -149281 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 1343-2 chr10 21058288 21059000 + 4 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -115346 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 673-80 chr3 134295332 134295645 + 4 NA Intergenic L2a|LINE|L2 -18088 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 685-64 chr3 43331593 43331805 + 4 NA intron (NM_001100594, intron 2 of 5) MIRc|SINE|MIR 20263 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 548-231 chr8 78426617 78426783 + 4 NA Intergenic Intergenic -89640 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 654-101 chr5 122744197 122744444 + 4 NA Intergenic Intergenic -13760 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 534-173 chr4 21123487 21123715 + 4 NA intron (NM_147182, intron 2 of 8) Charlie1b|DNA|hAT-Charlie -139592 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 520-199 chr3 191969743 191969938 + 4 NA Intergenic Intergenic -268790 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 580-14 chr10 16366770 16367028 + 4 NA Intergenic Intergenic -70044 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 713-37 chr2 52068115 52068381 + 4 NA intron (NR_135237, intron 7 of 10) L1ME3Cz|LINE|L1 -302400 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 976 chr1 105312055 105312501 + 4 NA Intergenic Intergenic 306657 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 428-185 chr3 99010221 99010361 + 4 NA Intergenic Intergenic -108596 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 1221 chr19 36522431 36522948 + 4 NA intron (NM_001012756, intron 2 of 3) intron (NM_001012756, intron 2 of 3) 5582 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 670 chr1 14480643 14480929 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -60813 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 702-73 chr5 8470836 8471019 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR 10002 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 726-31 chr15 27098751 27099061 + 4 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 62413 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 728-31 chr14 54091502 54091799 + 4 NA Intergenic L1M5|LINE|L1 -134759 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 561-7 chr1 107398582 107398791 + 4 NA intron (NM_001113226, intron 3 of 6) intron (NM_001113226, intron 3 of 6) 250617 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 859-15 chr16 71299238 71299632 + 4 NA Intergenic L2-3_Crp|LINE|L2 -9713 NM_001324377 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 1036-26 chr8 107059409 107059685 + 4 NA Intergenic L1M3|LINE|L1 276968 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 1112-6 chr16 36078842 36079169 + 4 NA Intergenic ALR/Alpha|Satellite|centr 332453 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 964-29 chr6 158955737 158956196 + 4 NA Intergenic L1MB2|LINE|L1 44221 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 627-51 chr2 13651447 13651623 + 4 NA Intergenic MIRc|SINE|MIR -644522 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 600-67 chr2 100142902 100143148 + 4 NA promoter-TSS (NM_002285) promoter-TSS (NM_002285) -435 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 1074-10 chr4 67068411 67069013 + 4 NA Intergenic L1MB2|LINE|L1 353288 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 600-9 chr1 237107916 237108179 + 4 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 65863 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 654-92 chr5 4165238 4165542 + 4 NA Intergenic Intergenic 569558 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 632-64 chr20 15768079 15768265 + 4 NA intron (NM_001351663, intron 8 of 17) Tigger3b|DNA|TcMar-Tigger 155142 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 390-436 chrX 99125887 99126022 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL 1284319 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 736-70 chr5 63630910 63631305 + 4 NA Intergenic Intergenic 331185 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 715-57 chr4 31660535 31660831 + 4 NA Intergenic Intergenic 154139 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 801-68 chr9 112544191 112544569 + 4 NA intron (NM_133465, intron 1 of 3) L2b|LINE|L2 -56736 NM_001350649 100133204 Hs.662552 NM_001350649 C9orf147 - chromosome 9 open reading frame 147 protein-coding 1237-11 chr8 134995658 134996299 + 4 NA Intergenic L2b|LINE|L2 146043 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 974-17 chr5 166377510 166377845 + 4 NA Intergenic Intergenic 548693 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 745-4 chr10 14668843 14669117 + 4 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) -64579 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 659-125 chr8 133416605 133416899 + 4 NA Intergenic Intergenic -119448 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 1043-7 chr3 67895013 67895481 + 4 NA intron (NR_109992, intron 6 of 6) intron (NR_109992, intron 6 of 6) -96345 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 1008-19 chr7 21008729 21009145 + 4 NA intron (NR_126381, intron 2 of 5) AluJr|SINE|Alu 173506 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 967-30 chr9 119729387 119729816 + 4 NA Intergenic Intergenic -205459 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 622-76 chr20 3957263 3957542 + 4 NA intron (NM_001134337, intron 2 of 5) AluJb|SINE|Alu -39839 NR_031722 100302282 NR_031722 ENSG00000283320 MIR103B2 MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as microRNA 103b-2 ncRNA 573-137 chr5 8203940 8204152 + 4 NA Intergenic Intergenic 253518 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 729-71 chr7 62930337 62930671 + 4 NA Intergenic ALR/Alpha|Satellite|centr 373552 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 616-170 chr8 61358870 61359057 + 4 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 70993 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 1112-12 chr5 45927913 45928523 + 4 NA Intergenic ALR/Alpha|Satellite|centr -231838 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 862-32 chr8 83153293 83153667 + 4 NA Intergenic Intergenic 241376 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 556-184 chr5 170199783 170199941 + 4 NA promoter-TSS (NR_108022) promoter-TSS (NR_108022) -721 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 441-71 chr14 19920336 19920554 + 4 NA promoter-TSS (NM_001005483) promoter-TSS (NM_001005483) -162 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 1304-2 chr16 80450702 80451289 + 4 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -89739 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 765-66 chr8 140252315 140252508 + 4 NA intron (NM_001160372, intron 16 of 22) intron (NM_001160372, intron 16 of 22) -151876 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 782-53 chr5 68861225 68861514 + 4 NA Intergenic L1ME1|LINE|L1 168558 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 670-98 chr5 96282459 96282658 + 4 NA intron (NR_130776, intron 1 of 4) Kanga2_a|DNA|TcMar-Tc2 149601 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 748-13 chr10 38136942 38137218 + 4 NA intron (NM_001324258, intron 6 of 6) L1MB4|LINE|L1 -38591 NR_024524 100129055 Hs.148265 NR_024524 LOC100129055 - cyclin Y like 1 pseudogene pseudo 614-129 chr8 53701904 53702196 + 4 NA Intergenic L1M1|LINE|L1 140992 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 500-189 chr3 112154398 112154575 + 4 NA intron (NM_001320531, intron 26 of 27).2 intron (NM_001320531, intron 26 of 27).2 21063 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 494-52 chr12 94022190 94022398 + 4 NA Intergenic Intergenic -78688 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 791-50 chr4 292713 293064 + 4 NA intron (NM_001137608, intron 3 of 3) AluY|SINE|Alu 12586 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 828 chr1 14042971 14043477 + 4 NA Intergenic L1MB3|LINE|L1 293809 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 768-48 chr7 51818907 51819312 + 4 NA Intergenic Intergenic -425853 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 679-21 chr11 82514742 82515062 + 4 NA Intergenic MER5A1|DNA|hAT-Charlie -110989 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 1017-26 chr9 100445550 100445887 + 4 NA intron (NM_001198807, intron 3 of 3) intron (NM_001198807, intron 3 of 3) 3812 NM_001198812 100526694 Hs.598100 NM_001198812 MSANTD3-TMEFF1 C9orf2|C9orf3-TMEFF1|C9orf30-TMEFF1|H7365|TMEFF1|TR-1 MSANTD3-TMEFF1 readthrough protein-coding 1495-5 chr5 41310536 41311059 + 4 NA 3' UTR (NM_001005473, exon 3 of 3) 3' UTR (NM_001005473, exon 3 of 3) -49328 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 957-15 chr20 10753674 10754049 + 4 NA non-coding (NR_110611, exon 2 of 2) non-coding (NR_110611, exon 2 of 2) 771 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 592-31 chr12 29431626 29431897 + 4 NA intron (NR_073172, intron 1 of 1) intron (NR_073172, intron 1 of 1) 42467 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 1304-7 chr6 137105561 137106122 + 4 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -60661 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 1115-12 chr4 13273599 13274011 + 4 NA Intergenic L1PA17|LINE|L1 210535 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 1454-2 chr12 7742554 7743363 + 4 NA intron (NM_203503, intron 2 of 5) intron (NM_203503, intron 2 of 5) 4417 NM_001371390 745-73 chr7 145701067 145701463 + 4 NA Intergenic L1MD2|LINE|L1 -865212 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 735-70 chr5 83518936 83519258 + 4 NA intron (NM_001126336, intron 6 of 12) intron (NM_001126336, intron 6 of 12) 43217 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 508-101 chr2 76593497 76593719 + 4 NA Intergenic Intergenic -392357 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 937-9 chr15 92061093 92061453 + 4 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 206969 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 562-37 chr11 104813923 104814182 + 4 NA Intergenic L2a|LINE|L2 84618 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 1630-4 chr7 62716257 62717122 + 4 NA Intergenic ALR/Alpha|Satellite|centr 587367 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 417-36 chr10 64325794 64325956 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger -499653 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 970-12 chr2 78248146 78248711 + 4 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 42303 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 653-49 chr17 15117345 15117670 + 4 NA Intergenic Intergenic -11320 NR_103559 94151 Hs.98684 NR_103559 CDRT8 - CMT1A duplicated region transcript 8 ncRNA 642-98 chr5 166944290 166944465 + 4 NA Intergenic AluSx|SINE|Alu -18007 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 661-24 chr14 86663329 86663578 + 4 NA Intergenic Intergenic -242325 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 685-92 chr7 151298886 151299072 + 4 NA Intergenic L1MC5|LINE|L1 -21830 NM_003078 6604 Hs.647067 NM_003078 ENSG00000082014 SMARCD3 BAF60C|CRACD3|Rsc6p SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 protein-coding 1022-22 chr7 49536591 49537115 + 4 NA Intergenic L1MA9|LINE|L1 -236785 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 1130-4 chr14 37620500 37620900 + 4 NA intron (NM_001310135, intron 2 of 32) L1MB2|LINE|L1 25071 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 644-57 chr3 25873852 25874063 + 4 NA promoter-TSS (NR_034055) promoter-TSS (NR_034055) -262 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 582-72 chr2 80782293 80782607 + 4 NA Intergenic Intergenic 469071 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 745-36 chr21 31402997 31403276 + 4 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -58782 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 771 chr1 116705263 116705596 + 4 NA intron (NR_149353, intron 2 of 3) Arthur1B|DNA|hAT-Tip100 11317 NR_149353 388667 Hs.127851 NR_149353 ENSG00000203864 C1orf137 - chromosome 1 open reading frame 137 (putative) ncRNA 653-84 chr3 44693038 44693287 + 4 NA Intergenic AluSq2|SINE|Alu -7509 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 625-117 chr8 115354943 115355196 + 4 NA Intergenic Intergenic 312944 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 673-52 chr2 40483316 40483550 + 4 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) 29002 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 592-176 chr8 113904355 113904503 + 4 NA Intergenic Intergenic -467490 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 1100-6 chr12 87211745 87212149 + 4 NA Intergenic L1MB1|LINE|L1 -118792 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 700-82 chr5 79481413 79481648 + 4 NA intron (NM_001277078, intron 1 of 5) L1MEc|LINE|L1 32306 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 780-13 chr12 7150145 7150427 + 4 NA intron (NM_014718, intron 14 of 17) intron (NM_014718, intron 14 of 17) 19915 NM_014718 9746 Hs.535378 NM_014718 ENSG00000139182 CLSTN3 CDHR14|CSTN3|alcbeta calsyntenin 3 protein-coding 610-136 chr5 32729915 32730105 + 4 NA intron (NM_001363652, intron 2 of 7) L1MC4a|LINE|L1 18689 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 769-40 chr3 96512717 96513137 + 4 NA Intergenic L1MC4|LINE|L1 152963 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 804-35 chr20 11095382 11095631 + 4 NA Intergenic Intergenic 68962 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 480-158 chr2 144959823 144960063 + 4 NA intron (NR_033870, intron 3 of 4) MARNA|DNA|TcMar-Mariner 291976 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 1753-4 chr5 150932898 150933784 + 4 NA intron (NR_026867, intron 4 of 4) L1MB8|LINE|L1 13243 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 710-34 chr17 66594533 66594767 + 4 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -177796 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 888-7 chr11 90685202 90685565 + 4 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -129526 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 452-200 chr4 141269388 141269538 + 4 NA Intergenic L1MC5a|LINE|L1 48568 NM_014487 27309 Hs.120766 NM_014487 ENSG00000109445 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 515-148 chr21 29768327 29768525 + 4 NA intron (NM_000830, intron 1 of 16) LTR16E2|LTR|ERVL 20251 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 666-14 chr10 127844739 127844975 + 4 NA Intergenic Intergenic 48084 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 1578-3 chr5 12051926 12052790 + 4 NA Intergenic MER110|LTR|ERV1 -147912 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 416-187 chr2 177013228 177013407 + 4 NA Intergenic Intergenic 199094 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 1078-11 chr4 33593264 33593748 + 4 NA Intergenic HUERS-P3b-int|LTR|ERV1 446387 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 505-320 chr8 139556955 139557168 + 4 NA Intergenic Intergenic 146062 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 852-32 chr3 56034628 56034860 + 4 NA intron (NR_132749, intron 7 of 17) L1M1|LINE|L1 -182150 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 1396-10 chr8 89158721 89159254 + 4 NA Intergenic Intergenic 598724 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 757-34 chr20 36290432 36290670 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -15788 NM_014902 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 593-137 chr7 75710654 75710889 + 4 NA intron (NM_005338, intron 1 of 30) intron (NM_005338, intron 1 of 30) 28170 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 1901 chr14 66438895 66439913 + 4 NA Intergenic L1MEc|LINE|L1 -46967 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 371-336 chr6 61509648 61509818 + 4 NA Intergenic ALR/Alpha|Satellite|centr -64397 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 587-111 chr3 165104175 165104389 + 4 NA Intergenic L1ME1|LINE|L1 -25786 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 418-281 chr8 59699747 59699897 + 4 NA Intergenic Intergenic 580612 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 672-39 chr16 59583894 59584234 + 4 NA Intergenic Intergenic 171127 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 824-6 chr12 23494179 23494474 + 4 NA Intergenic Intergenic 90260 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 1250-4 chr5 141369306 141370135 + 4 NA promoter-TSS (NM_032097) promoter-TSS (NM_032097) -522 NM_032097 56102 Hs.368160 NM_018924 ENSG00000262209 PCDHGB3 PCDH-GAMMA-B3 protocadherin gamma subfamily B, 3 protein-coding 740-35 chr18 3833375 3833681 + 4 NA intron (NM_001242761, intron 4 of 11) AluJb|SINE|Alu 11830 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 774-84 chr8 87415817 87416287 + 4 NA Intergenic L1MB7|LINE|L1 457963 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 938 chr1 69335902 69336218 + 4 NA Intergenic Intergenic -97195 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 1460-4 chr9 86163041 86163968 + 4 NA Intergenic AluJr|SINE|Alu 35964 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 347-405 chr5 85386461 85386562 + 4 NA Intergenic Intergenic -895933 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 255-306 chr4 143093414 143093500 + 4 NA Intergenic MER4-int|LTR|ERV1 91404 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 756-22 chr19 36535116 36535348 + 4 NA Intergenic LTR78|LTR|ERV1 -6961 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 509-87 chr16 81973010 81973228 + 4 NA Intergenic L1M5|LINE|L1 38351 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 629-65 chr2 88148671 88148932 + 4 NA Intergenic L1MA5|LINE|L1 -20739 NM_001443 2168 Hs.380135 NM_001443 ENSG00000163586 FABP1 FABPL|L-FABP fatty acid binding protein 1 protein-coding 468-259 chr5 101066759 101066932 + 4 NA Intergenic Intergenic -163563 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 1233-5 chr20 24907369 24907877 + 4 NA Intergenic L1ME2z|LINE|L1 -41646 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 500-101 chr16 11062463 11062687 + 4 NA intron (NM_015226, intron 18 of 22) MIRb|SINE|MIR 118011 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 688-68 chr20 20312802 20313130 + 4 NA intron (NM_015585, intron 25 of 26) intron (NM_015585, intron 25 of 26) -55138 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 671-21 chr12 2274318 2274500 + 4 NA intron (NR_046769, intron 1 of 2) intron (NR_046769, intron 1 of 2) 4633 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 1041-10 chr5 131848063 131848560 + 4 NA intron (NM_001303622, intron 11 of 12) L1MB7|LINE|L1 -51294 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 851-29 chr21 30141657 30142067 + 4 NA Intergenic L2|LINE|L2 24943 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 613-33 chr14 70544746 70544943 + 4 NA Intergenic L1M5|LINE|L1 -9840 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 1215-6 chr2 104603695 104604303 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -93490 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 636-11 chr1 235988796 235988983 + 4 NA intron (NM_002508, intron 14 of 19) L1MB3|LINE|L1 76201 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 829-21 chr20 45387173 45387657 + 4 NA intron (NR_003189, intron 3 of 5) L1MC|LINE|L1 -9090 NM_014477 27296 Hs.710271 NM_014477 ENSG00000124251 TP53TG5 C20orf10|CLG01 TP53 target 5 protein-coding 1051-8 chr2 154941333 154941762 + 4 NA Intergenic Intergenic 242852 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 410-302 chr8 53264966 53265159 + 4 NA Intergenic L1M7|LINE|L1 -13365 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 566-119 chr22 34988430 34988669 + 4 NA intron (NR_138042, intron 1 of 4) MLT1K|LTR|ERVL-MaLR 9367 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 676-89 chr3 188080847 188081175 + 4 NA Intergenic Intergenic -72887 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 458-183 chr4 59299724 59299887 + 4 NA Intergenic L1MB7|LINE|L1 286232 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 733-33 chr2 51060580 51061048 + 4 NA intron (NR_135237, intron 2 of 10) L1MB5|LINE|L1 28213 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 847-38 chr5 20172184 20172664 + 4 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -133127 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 718-47 chr2 220300142 220300382 + 4 NA Intergenic Charlie16a|DNA|hAT-Charlie -393697 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 1009-4 chr13 96726937 96727494 + 4 NA intron (NM_153456, intron 1 of 1) MIR|SINE|MIR 256957 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 544-167 chr4 116938917 116939096 + 4 NA Intergenic Intergenic 146570 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 893 chr1 46919374 46919809 + 4 NA Intergenic L1MEf|LINE|L1 -19116 NR_002788 163720 Hs.591431 NR_002788 ENSG00000154198 CYP4Z2P - cytochrome P450 family 4 subfamily Z member 2, pseudogene pseudo 668-13 chr11 38639541 38640036 + 4 NA intron (NR_120554, intron 1 of 4) L1MA3|LINE|L1 6568 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 863-41 chr7 45930642 45930915 + 4 NA Intergenic L1ME1|LINE|L1 -9506 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 578-60 chr14 66578797 66579138 + 4 NA intron (NM_001024218, intron 1 of 21) L1M1|LINE|L1 71560 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 901-9 chr11 88657587 88657944 + 4 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 153189 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 690-46 chr16 25388544 25388980 + 4 NA Intergenic LTR16|LTR|ERVL -130917 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 1006-32 chrX 63558378 63558755 + 4 NA intron (NR_152610, intron 1 of 4) MIR|SINE|MIR 2529 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 634-42 chr12 38475569 38475814 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 158917 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 845-32 chr5 178615230 178615650 + 4 NA intron (NM_020666, intron 5 of 12) L1MD3|LINE|L1 11610 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 376-104 chr14 53282602 53282714 + 4 NA Intergenic L1M5|LINE|L1 129304 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 577-99 chr2 163294232 163294582 + 4 NA Intergenic Intergenic 441601 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 744-60 chr6 53146919 53147254 + 4 NA intron (NM_003643, intron 1 of 5) (AATA)n|Simple_repeat|Simple_repeat 1755 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 782-34 chr2 228026191 228026542 + 4 NA intron (NM_030623, intron 4 of 10) MIR|SINE|MIR 154735 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 796-59 chr8 127588059 127588341 + 4 NA Intergenic L2c|LINE|L2 -106061 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 520-269 chr6 164889856 164890051 + 4 NA Intergenic Intergenic -67890 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 606-59 chr16 49154551 49154769 + 4 NA Intergenic L1MA9|LINE|L1 127178 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 864-53 chr9 30267325 30267710 + 4 NA Intergenic Intergenic 140937 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 1819 chr19 36884966 36885817 + 4 NA intron (NR_038362, intron 2 of 2) L1ME3|LINE|L1 30648 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 606-158 chr8 59419129 59419299 + 4 NA Intergenic L1PREC2|LINE|L1 300004 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 923-5 chr14 47004294 47004719 + 4 NA intron (NM_001113498, intron 8 of 16) L1ME1|LINE|L1 338740 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 694-125 chr7 98481871 98482179 + 4 NA Intergenic MER63B|DNA|hAT-Blackjack -80935 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 723-51 chr3 108096717 108097166 + 4 NA Intergenic Intergenic -5853 NM_001777 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 392-231 chr4 72704106 72704258 + 4 NA Intergenic Arthur1|DNA|hAT-Tip100 -134961 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 898-11 chr16 17323171 17323676 + 4 NA intron (NM_022166, intron 2 of 11) intron (NM_022166, intron 2 of 11) 147537 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 734-77 chr8 124949700 124950047 + 4 NA intron (NR_027321, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 7865 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 628-98 chr4 162818940 162819161 + 4 NA Intergenic Intergenic 274578 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 438-292 chr9 28007050 28007211 + 4 NA intron (NM_001354574, intron 5 of 5) MIR3|SINE|MIR -433264 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1094-9 chr5 15926252 15926700 + 4 NA intron (NM_001278317, intron 2 of 3) (AT)n|Simple_repeat|Simple_repeat -8706 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 709-50 chr21 22813691 22814031 + 4 NA Intergenic Intergenic -265423 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 902-3 chr10 56654739 56655145 + 4 NA Intergenic L1M1|LINE|L1 -293669 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 625-14 chr10 83592145 83592392 + 4 NA Intergenic L1M4a2|LINE|L1 84821 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 619-124 chr7 119015722 119015895 + 4 NA Intergenic Intergenic 791104 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 714-3 chr1 42015475 42015663 + 4 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) 20365 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 433-296 chr9 29184351 29184533 + 4 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 27857 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 756-49 chr6 19798060 19798305 + 4 NA intron (NR_134651, intron 2 of 3) L1MD2|LINE|L1 6577 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 782-29 chr19 43848743 43849102 + 4 NA 3' UTR (NM_181845, exon 7 of 7) 3' UTR (NM_181845, exon 7 of 7) 21601 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 533-251 chrX 58226178 58226419 + 4 NA Intergenic HSAT4|Satellite|centr -315665 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 469-140 chr2 116578375 116578681 + 4 NA Intergenic Intergenic 1234713 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 873-10 chr15 25159180 25159473 + 4 NA intron (NR_146177, intron 61 of 147) intron (NR_146177, intron 61 of 147) -11397 NR_001291 338433 NR_001291 ENSG00000201831 SNORD115-1 HBII-52-1|RNHBII52 small nucleolar RNA, C/D box 115-1 snoRNA 1337-6 chr5 123838104 123838630 + 4 NA Intergenic L1PA15|LINE|L1 292950 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 1455-8 chr8 130708714 130709290 + 4 NA Intergenic L1ME3Cz|LINE|L1 -265328 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 715-31 chr19 56420323 56420607 + 4 NA intron (NM_001159860, intron 4 of 4) L1ME2|LINE|L1 16133 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 880-7 chr11 71317599 71317992 + 4 NA Intergenic L1MCa|LINE|L1 -92999 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 453-38 chr11 39540881 39540995 + 4 NA Intergenic L1M3b|LINE|L1 752192 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 808-42 chr5 44406453 44406762 + 4 NA intron (NR_108034, intron 2 of 2) L1MC1|LINE|L1 -17187 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 1182-8 chr2 57669921 57670248 + 4 NA Intergenic L1M5|LINE|L1 -237567 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 657-94 chr7 157846165 157846432 + 4 NA intron (NM_130843, intron 11 of 21) intron (NM_130843, intron 11 of 21) -8287 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 645-109 chr7 10759891 10760239 + 4 NA intron (NR_147499, intron 1 of 2) L1ME3Cz|LINE|L1 19879 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 650-39 chr17 70993890 70994161 + 4 NA Intergenic Intergenic 208154 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 772-36 chr3 39682772 39683144 + 4 NA Intergenic Intergenic -125956 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 1341-3 chr6 27395750 27396437 + 4 NA intron (NM_001322288, intron 2 of 3) intron (NM_001322288, intron 2 of 3) 7375 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 511-265 chr8 114060231 114060408 + 4 NA Intergenic Intergenic -623380 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 296-137 chr14 47312055 47312145 + 4 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 31146 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 1195-15 chr8 103619604 103620162 + 4 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -117973 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 1247-3 chr12 133098095 133098936 + 4 NA intron (NM_001300777, intron 4 of 4) AluSz|SINE|Alu 18312 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 494-233 chr5 115539815 115539963 + 4 NA intron (NM_020177, intron 2 of 2) intron (NM_020177, intron 2 of 2) 4886 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 919-8 chr17 73854588 73855019 + 4 NA Intergenic Intergenic -26266 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 675-65 chr4 38660487 38660720 + 4 NA intron (NR_026804, intron 1 of 7) MLT1L|LTR|ERVL-MaLR -3596 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 581-158 chr7 54517154 54517405 + 4 NA Intergenic L1M3|LINE|L1 -25046 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 621-49 chr18 66676161 66676366 + 4 NA Intergenic Intergenic -72173 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 782-6 chr10 78673386 78673666 + 4 NA Intergenic Intergenic 393922 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 984-17 chr7 20288588 20288908 + 4 NA Intergenic Intergenic -7960 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 379-284 chr6 38384344 38384536 + 4 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -97156 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 537-146 chr21 28488407 28488622 + 4 NA Intergenic Intergenic -50804 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 1049-20 chr8 79277790 79278353 + 4 NA Intergenic L1PA16|LINE|L1 -54117 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 675-15 chr10 75406596 75406796 + 4 NA intron (NR_110302, intron 1 of 1) CpG-3054 -2461 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 714-21 chr14 67545452 67545767 + 4 NA intron (NM_020715, intron 2 of 28) L1ME3Cz|LINE|L1 -11759 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 1116 chr1 18516741 18517295 + 4 NA Intergenic L1MB7|LINE|L1 36088 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 408-128 chr16 13943954 13944093 + 4 NA intron (NM_005236, intron 9 of 10) L2c|LINE|L2 23866 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 819-27 chr5 79382986 79383524 + 4 NA intron (NM_001277078, intron 5 of 5) L1MA4A|LINE|L1 130581 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 527-189 chr4 61743402 61743620 + 4 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 418254 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 599-3 chr1 56319183 56319378 + 4 NA Intergenic Intergenic -95683 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 650-33 chr14 83498455 83498736 + 4 NA Intergenic Intergenic 855963 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 707-93 chr7 29024696 29025016 + 4 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 44889 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 611-143 chr7 131935865 131936118 + 4 NA intron (NR_110836, intron 5 of 5) intron (NR_110836, intron 5 of 5) 25771 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 489-188 chr4 45410031 45410247 + 4 NA Intergenic Intergenic -683505 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 691-33 chr2 3836379 3836689 + 4 NA intron (NM_001287444, intron 10 of 10) L1MD3|LINE|L1 129692 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 842-44 chr6 146468261 146468602 + 4 NA Intergenic Intergenic -75402 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 603-141 chr6 46250076 46250285 + 4 NA intron (NM_001251973, intron 2 of 4) L2c|LINE|L2 -26144 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 587-20 chr10 119831297 119831534 + 4 NA 3' UTR (NM_001256378, exon 16 of 16) 3' UTR (NM_001256378, exon 16 of 16) 12158 NM_001243194 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 747-18 chr14 28094449 28094734 + 4 NA Intergenic L1ME3A|LINE|L1 -421370 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 580-108 chr3 24407744 24407990 + 4 NA intron (NM_001354709, intron 1 of 10) intron (NM_001354709, intron 1 of 10) -86220 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 516-225 chr6 47324508 47324702 + 4 NA Intergenic L1MA8|LINE|L1 -14700 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 884-29 chr3 25251954 25252279 + 4 NA intron (NM_001290216, intron 4 of 10) L1MB8|LINE|L1 -88686 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 910 chr1 94632226 94632616 + 4 NA intron (NR_160780, intron 4 of 5) L1MB7|LINE|L1 88719 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 617-8 chr1 199838321 199838525 + 4 NA Intergenic L1PA13|LINE|L1 -189287 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 390-346 chr7 20910761 20910900 + 4 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 75399 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 1116-13 chr6 159374594 159374955 + 4 NA Intergenic MLT1F2|LTR|ERVL-MaLR -8757 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 868-24 chr21 30619288 30619676 + 4 NA Intergenic Intergenic -1145 NM_001350977 100151643 Hs.580879 NM_001350977 ENSG00000206105 KRTAP20-4 KAP20.4 keratin associated protein 20-4 protein-coding 964-17 chr2 98886533 98886967 + 4 NA intron (NM_207362, intron 1 of 9) L1M4|LINE|L1 49475 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 650-16 chr12 3588890 3589172 + 4 NA intron (NM_019854, intron 8 of 9) intron (NM_019854, intron 8 of 9) -96212 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 1000-9 chr18 7298223 7298660 + 4 NA Intergenic L1MB7|LINE|L1 67337 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 1053-5 chr12 119098455 119098935 + 4 NA intron (NM_194286, intron 1 of 12) L2a|LINE|L2 77789 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 1006-24 chr6 2285242 2285633 + 4 NA intron (NR_046229, intron 3 of 6) L1MEg|LINE|L1 39684 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 900-40 chr7 64713295 64713614 + 4 NA Intergenic Intergenic 34390 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 936-30 chr7 62787633 62788065 + 4 NA Intergenic ALR/Alpha|Satellite|centr 516207 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 875-30 chr5 57519644 57519986 + 4 NA Intergenic MIR|SINE|MIR -37004 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 1247-5 chr5 5975685 5976458 + 4 NA Intergenic L2c|LINE|L2 361221 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 628-45 chr14 65655722 65656085 + 4 NA intron (NM_004480, intron 5 of 9) L1MA3|LINE|L1 184801 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 661-75 chr4 125102208 125102499 + 4 NA Intergenic Intergenic -214059 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 943-7 chr14 48670334 48670697 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie -875501 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 1426 chr15 85905140 85905787 + 4 NA Intergenic Intergenic 79828 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 728-58 chr22 39747358 39747702 + 4 NA intron (NM_152512, intron 6 of 6) intron (NM_152512, intron 6 of 6) 146230 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 344-110 chr12 59836777 59836876 + 4 NA Intergenic L1MC3|LINE|L1 147456 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 643-107 chr6 115951773 115951936 + 4 NA intron (NM_002031, intron 5 of 7) intron (NM_002031, intron 5 of 7) -86877 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 568-49 chr14 56126685 56126860 + 4 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 8361 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 1025-10 chr19 27570613 27570939 + 4 NA Intergenic ALR/Alpha|Satellite|centr -222655 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 724-27 chr19 10043698 10043900 + 4 NA non-coding (NR_027300, exon 6 of 30) non-coding (NR_027300, exon 6 of 30) 2443 NR_027300 388503 Hs.655363 NM_001013640 ENSG00000167798 C3P1 CPLP complement component 3 precursor pseudogene pseudo 867-13 chr14 62304507 62304952 + 4 NA Intergenic Intergenic -164756 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 546-113 chr2 140477844 140478002 + 4 NA intron (NM_018557, intron 59 of 90) intron (NM_018557, intron 59 of 90) 108762 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 424-54 chr12 46517506 46517622 + 4 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 133457 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 564-120 chr3 8271696 8271913 + 4 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 229854 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 1058-11 chr17 62941382 62941878 + 4 NA Intergenic L1MEg|LINE|L1 -2585 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 1391 chr12 65904012 65904774 + 4 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -22068 NR_158984 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 2209-2 chr5 56395396 56396716 + 4 NA Intergenic Intergenic 85713 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 585-60 chr17 78620814 78621036 + 4 NA intron (NR_110848, intron 4 of 4) L1MB5|LINE|L1 11132 NR_110849 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 267-288 chr4 40848260 40848343 + 4 NA intron (NM_001166051, intron 1 of 6) MIRb|SINE|MIR 8854 NM_001166051 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 671-97 chr8 36064686 36064947 + 4 NA Intergenic Intergenic -354496 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 589-141 chr6 56174357 56174633 + 4 NA intron (NM_030820, intron 3 of 29) L1MB1|LINE|L1 73085 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 632-65 chr20 39206974 39207183 + 4 NA Intergenic Intergenic 17670 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 845-17 chr2 78309737 78310145 + 4 NA Intergenic Intergenic -19210 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 712-67 chr4 183795216 183795513 + 4 NA Intergenic L1MC4|LINE|L1 -2658 NR_132761 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 788-7 chr11 45439438 45439844 + 4 NA Intergenic L1MC|LINE|L1 68244 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 925-22 chr21 29458905 29459346 + 4 NA Intergenic MER3|DNA|hAT-Charlie -36922 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 864-7 chr12 78584093 78584419 + 4 NA Intergenic L1M5|LINE|L1 -224510 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 476-81 chr14 56933408 56933632 + 4 NA Intergenic L1MC5|LINE|L1 120362 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 724-78 chr6 19987784 19987987 + 4 NA Intergenic Intergenic 150515 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 421-100 chr16 73455493 73455714 + 4 NA Intergenic Intergenic 68798 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 626-98 chr4 30882632 30882932 + 4 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 162413 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 798-5 chr10 53484254 53484590 + 4 NA Intergenic Intergenic -712722 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 703-82 chr6 141176412 141176661 + 4 NA Intergenic LTR12D|LTR|ERV1 492722 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 234-50 chr10 116764449 116764549 + 4 NA intron (NM_001330164, intron 2 of 12) L1MC5a|LINE|L1 -21933 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 717-85 chr8 129787896 129788272 + 4 NA Intergenic L1MA3|LINE|L1 -1460 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 698-3 chr1 33779254 33779555 + 4 NA intron (NM_052896, intron 12 of 69) MIRb|SINE|MIR -81071 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 839-7 chr11 81752716 81753094 + 4 NA Intergenic Intergenic 137931 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 465-283 chr8 36301858 36301991 + 4 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -482450 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 910-19 chr2 78922380 78922870 + 4 NA Intergenic LTR16A|LTR|ERVL -103077 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 1003-5 chr11 40896963 40897536 + 4 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 562387 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 386-145 chr19 9755261 9755423 + 4 NA intron (NM_001353800, intron 6 of 6) intron (NM_001353800, intron 6 of 6) 13396 NM_001353799 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 516-228 chr6 99638945 99639136 + 4 NA Intergenic L1MC4|LINE|L1 32266 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 981-31 chr8 55023016 55023519 + 4 NA Intergenic L1MD1|LINE|L1 -78761 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 715-67 chr4 141480094 141480397 + 4 NA Intergenic L1MA4|LINE|L1 -147628 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 702-93 chr7 30182765 30182962 + 4 NA Intergenic MER3|DNA|hAT-Charlie 47877 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 358-398 chr6 16176510 16176684 + 4 NA Intergenic L1PA8|LINE|L1 35041 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 1037-11 chr3 104484811 104485337 + 4 NA Intergenic L1PA7|LINE|L1 -881639 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 767-31 chr22 33083084 33083607 + 4 NA Intergenic Intergenic -24964 NM_001135774 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 498-36 chr10 83593440 83593624 + 4 NA Intergenic L1M4a2|LINE|L1 83557 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 863-3 chr10 90188098 90188434 + 4 NA Intergenic MSTD|LTR|ERVL-MaLR -230893 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 616-166 chr7 114684474 114684750 + 4 NA intron (NR_033767, intron 17 of 17) intron (NR_033767, intron 17 of 17) 31267 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 536-188 chr5 129514906 129515123 + 4 NA intron (NM_133638, intron 3 of 22) L1MA1|LINE|L1 -54325 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 600-55 chr19 51850913 51851151 + 4 NA intron (NR_163433, intron 6 of 11) intron (NR_163433, intron 6 of 11) 36904 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 733-80 chr8 87466220 87466506 + 4 NA Intergenic L1ME2|LINE|L1 407652 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 1424-3 chr15 91675592 91676098 + 4 NA Intergenic L1MEc|LINE|L1 -177863 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 945-15 chr5 92684255 92684808 + 4 NA Intergenic Intergenic 886812 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 502-5 chr1 58288974 58289172 + 4 NA Intergenic Intergenic -38526 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 700-18 chr11 79204249 79204512 + 4 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 197729 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 444-164 chr3 180457783 180457995 + 4 NA Intergenic Intergenic 43716 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 989-26 chr9 103601620 103602040 + 4 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -276797 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 653-53 chr17 78951920 78952266 + 4 NA Intergenic Intergenic -26706 NM_003255 7077 Hs.633514 NM_003255 ENSG00000035862 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 511-37 chr11 87899450 87899636 + 4 NA Intergenic Intergenic -180132 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 665-9 chr10 15620830 15621052 + 4 NA intron (NM_001291494, intron 12 of 28) intron (NM_001291494, intron 12 of 28) 98981 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 466-28 chr10 56934417 56934580 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR 370061 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 818-40 chr4 52330014 52330446 + 4 NA Intergenic L1MA6|LINE|L1 278926 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 738-64 chr7 45504250 45504617 + 4 NA Intergenic LTR8B|LTR|ERV1 -69707 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 733-16 chr14 32801828 32802058 + 4 NA intron (NM_004274, intron 12 of 13) L1MCa|LINE|L1 -136936 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 690-96 chr7 144635057 144635309 + 4 NA intron (NM_001350889, intron 2 of 5) L2|LINE|L2 103715 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 641-77 chr3 48324092 48324416 + 4 NA intron (NM_001080525, intron 1 of 4) L1MB8|LINE|L1 4087 NM_001080525 646424 Hs.257687 NM_001080525 ENSG00000229453 SPINK8 - serine peptidase inhibitor, Kazal type 8 (putative) protein-coding 965-8 chr2 62351964 62352484 + 4 NA Intergenic MER34A|LTR|ERV1 136703 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 569-157 chr6 125437340 125437557 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -135481 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 1102-16 chr6 103359605 103359944 + 4 NA Intergenic L1M2|LINE|L1 1499772 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 493-270 chr7 15825315 15825485 + 4 NA Intergenic L1ME4b|LINE|L1 137022 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 651-67 chr2 134486913 134487165 + 4 NA intron (NM_030923, intron 5 of 7) intron (NM_030923, intron 5 of 7) 231961 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 567-26 chr10 93169423 93169687 + 4 NA Intergenic Charlie18a|DNA|hAT-Charlie 95662 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 366-348 chr5 105216933 105217051 + 4 NA Intergenic MIR3|SINE|MIR 117518 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 563-114 chr22 28544246 28544436 + 4 NA intron (NM_001145418, intron 2 of 22) L1ME1|LINE|L1 84472 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 294-122 chr14 66351634 66351722 + 4 NA Intergenic L1MB1|LINE|L1 -134693 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 506-9 chr1 91059652 91059912 + 4 NA Intergenic Intergenic -37527 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 1505 chr1 227674660 227675311 + 4 NA intron (NR_102302, intron 5 of 5) intron (NR_102302, intron 5 of 5) 22722 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 527-96 chr15 60059691 60059955 + 4 NA Intergenic Intergenic 55512 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 1020-18 chr9 105529961 105530384 + 4 NA intron (NM_001287191, intron 10 of 13) intron (NM_001287191, intron 10 of 13) 10348 NR_104269 26134 Hs.113150 NR_104269 ENSG00000229419 RALGAPA1P1 GARNL2|GARNL2P|RALGAPA1P|bA235C23.1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudo 682-74 chr4 65295722 65296005 + 4 NA Intergenic L2a|LINE|L2 -291363 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 825-43 chr5 161002411 161002701 + 4 NA Intergenic L1M2|LINE|L1 -63930 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 484-49 chr12 75227295 75227514 + 4 NA Intergenic Intergenic -7336 NR_149000 100130268 Hs.524596 NR_149000 ENSG00000254451 LOC100130268 - uncharacterized LOC100130268 ncRNA 746-22 chr14 25748454 25748680 + 4 NA Intergenic Intergenic -698270 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 634-30 chr11 55113567 55113845 + 4 NA Intergenic ALR/Alpha|Satellite|centr -148449 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 1358-3 chr2 41683175 41683586 + 4 NA Intergenic L1MC1|LINE|L1 -194175 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 778-4 chr1 159611709 159612051 + 4 NA Intergenic L2c|LINE|L2 24054 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 636-25 chr11 100109367 100109651 + 4 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 553364 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 637-98 chr5 165681788 165682097 + 4 NA Intergenic L1M4c|LINE|L1 1211663 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 755-28 chr16 48776496 48776861 + 4 NA Intergenic L1M3e|LINE|L1 -166498 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 559-81 chr18 67739319 67739505 + 4 NA intron (NR_033921, intron 1 of 4) L1MEg|LINE|L1 75410 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 777-37 chr20 52729069 52729402 + 4 NA Intergenic MIR|SINE|MIR 108397 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 1079-7 chr3 189557171 189557844 + 4 NA Intergenic L1ME1|LINE|L1 -39239 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 277-454 chrUn_KI270336v1 860 983 + 4 NA NA SAR|Satellite|Satellite NA NA 737-39 chr19 29585188 29585560 + 4 NA Intergenic L1MEc|LINE|L1 -20909 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 858-42 chr8 56359009 56359528 + 4 NA Intergenic L1PA15|LINE|L1 31442 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 359-183 chr17 57381695 57381840 + 4 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 124748 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 1742-3 chr19 58196928 58197736 + 4 NA intron (NM_133502, intron 4 of 7) intron (NM_133502, intron 4 of 7) 14271 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 533-229 chr8 89918643 89918936 + 4 NA intron (NM_001126111, intron 4 of 5) L2|LINE|L2 16219 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 555-204 chr8 99951095 99951304 + 4 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -53383 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 2036 chr2 2821604 2822583 + 4 NA Intergenic L1MB1|LINE|L1 303933 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 624-55 chr19 38763818 38764055 + 4 NA Intergenic L1ME2|LINE|L1 9581 NM_002307 3963 Hs.702546 NM_002307 ENSG00000205076 LGALS7 GAL7|LGALS7A galectin 7 protein-coding 480-207 chr4 28512921 28513123 + 4 NA Intergenic Intergenic -306560 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 1050-5 chr14 54242403 54242946 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR -154194 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 694-66 chr2 89780900 89781118 + 4 NA Intergenic Intergenic -143102 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 540-21 chr1 184026652 184026903 + 4 NA intron (NM_001303421, intron 1 of 11) intron (NM_001303421, intron 1 of 11) 10951 NM_001303421 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 694-59 chr19 24334917 24335183 + 4 NA Intergenic ALR/Alpha|Satellite|centr -171603 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 818-48 chr5 45189689 45190139 + 4 NA Intergenic Intergenic 380967 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 768-47 chr7 50858015 50858347 + 4 NA Intergenic Intergenic -64728 NM_001371008 793-49 chr8 88470351 88470743 + 4 NA Intergenic HAL1M8|LINE|L1 -143064 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 747-43 chr3 122156137 122156472 + 4 NA Intergenic L1M2|LINE|L1 -27364 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 367-48 chr10 50973249 50973444 + 4 NA Intergenic MIRb|SINE|MIR -17542 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 562-223 chr8 129310965 129311254 + 4 NA Intergenic L1ME2|LINE|L1 -69869 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 693-15 chr10 83737162 83737616 + 4 NA Intergenic MER67A|LTR|ERV1 -60300 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 842-46 chr7 37778224 37778680 + 4 NA Intergenic L1MA3|LINE|L1 -70145 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 603-143 chr6 84685828 84686013 + 4 NA Intergenic Intergenic -3538 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 537-7 chr1 79485119 79485353 + 4 NA Intergenic Intergenic -478506 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 791-70 chr8 131866881 131867291 + 4 NA Intergenic L1ME3G|LINE|L1 -37007 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 384-326 chr6 143300528 143300694 + 4 NA intron (NM_016108, intron 4 of 5) intron (NM_016108, intron 4 of 5) 135829 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 465-301 chr8 127008061 127008224 + 4 NA Intergenic Intergenic -5012 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 718-74 chr5 68536877 68537202 + 4 NA Intergenic L1ME4a|LINE|L1 244462 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 892-38 chr8 89120086 89120527 + 4 NA Intergenic Intergenic 637405 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 766-61 chr6 157505214 157505492 + 4 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) -23779 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 769-30 chr2 134835724 134835976 + 4 NA Intergenic L1MEd|LINE|L1 -2766 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 590-100 chr3 19130976 19131153 + 4 NA Intergenic MER50B|LTR|ERV1 -17446 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 1080-18 chr22 48461589 48462246 + 4 NA Intergenic L1M5|LINE|L1 -27636 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 1002-19 chr7 35666013 35666504 + 4 NA intron (NM_022373, intron 5 of 8) intron (NM_022373, intron 5 of 8) 28877 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 1711 chr12 128244334 128244970 + 4 NA Intergenic AluJb|SINE|Alu -22751 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 361-465 chr8 134936346 134936542 + 4 NA Intergenic Intergenic 86509 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 842-3 chr1 172366929 172367362 + 4 NA intron (NM_015569, intron 17 of 20) L1M2|LINE|L1 -53540 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 770-59 chr5 63580706 63581086 + 4 NA Intergenic Intergenic 381396 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 895-14 chr17 53317610 53318154 + 4 NA Intergenic HAL1|LINE|L1 332377 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 592-72 chr18 65523976 65524202 + 4 NA Intergenic L1M1|LINE|L1 -226163 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 560-25 chr10 124273414 124273659 + 4 NA Intergenic HAL1|LINE|L1 145387 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 1101-3 chr12 133102100 133102554 + 4 NA intron (NM_001300778, intron 5 of 5) intron (NM_001300778, intron 5 of 5) 22124 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 866-37 chr5 85381628 85382013 + 4 NA Intergenic L1MA4|LINE|L1 -900624 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 749-21 chr11 70750468 70750715 + 4 NA intron (NM_012309, intron 13 of 24) L1MEf|LINE|L1 -88750 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 1241-11 chr8 137550190 137550729 + 4 NA Intergenic L1MC3|LINE|L1 -136871 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 509-214 chr6 52051082 52051305 + 4 NA intron (NM_138694, intron 21 of 66) MIRb|SINE|MIR 36420 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 526-28 chr10 125238079 125238285 + 4 NA Intergenic L1ME3B|LINE|L1 -77152 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 763-31 chr2 148836051 148836411 + 4 NA Intergenic L2a|LINE|L2 -38996 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 1376-2 chr12 28919663 28920532 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -229181 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 637-77 chr21 21633361 21633658 + 4 NA Intergenic Intergenic 103810 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 704-40 chr2 83591703 83591986 + 4 NA Intergenic L1MB5|LINE|L1 69030 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 595-15 chr10 47154552 47154740 + 4 NA Intergenic L1MEi|LINE|L1 -145551 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 715-66 chr4 107486624 107486888 + 4 NA Intergenic L1PA17|LINE|L1 233478 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 686-26 chr15 68861129 68861399 + 4 NA Intergenic L1MC5a|LINE|L1 -40369 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 1176-9 chr5 3937046 3937554 + 4 NA Intergenic L1MC1|LINE|L1 341468 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 878-28 chr20 31255090 31255489 + 4 NA Intergenic L2a|LINE|L2 -2375 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 852-40 chr4 138791195 138791651 + 4 NA Intergenic Intergenic 221223 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 572-149 chr6 5520970 5521148 + 4 NA intron (NM_006567, intron 4 of 6) intron (NM_006567, intron 4 of 6) -62984 NR_125847 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 796-62 chrX 81349203 81349706 + 4 NA Intergenic Intergenic 147352 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 580-64 chr17 51790844 51791120 + 4 NA intron (NM_001082533, intron 4 of 9) MIR|SINE|MIR 355555 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 1861 chr15 95698837 95699664 + 4 NA Intergenic Intergenic 266157 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 1257-6 chr3 151192775 151193395 + 4 NA intron (NM_053002, intron 13 of 42) intron (NM_053002, intron 13 of 42) 10131 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 837-8 chr14 96482297 96482645 + 4 NA intron (NM_001350890, intron 14 of 16) intron (NM_001350890, intron 14 of 16) 19855 NR_122121 730202 Hs.647565 NR_122121 LOC730202 - uncharacterized LOC730202 ncRNA 783-73 chr7 110720175 110720387 + 4 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -370725 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 1742-4 chr6 57332026 57332904 + 4 NA intron (NM_000947, intron 5 of 13) L1MB5|LINE|L1 14835 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 1889 chr19 27617079 27618166 + 4 NA Intergenic ALR/Alpha|Satellite|centr -175809 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 582-16 chr11 60531042 60531221 + 4 NA intron (NM_001278320, intron 4 of 4) L1M4a2|LINE|L1 15739 NM_001278320 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 698-9 chr1 208260464 208260762 + 4 NA Intergenic L1MC5|LINE|L1 -16229 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 494-80 chr15 92407739 92407986 + 4 NA intron (NM_001330416, intron 1 of 4) MER113|DNA|hAT-Charlie 13975 NM_001330416 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 478-319 chrX 141437052 141437217 + 4 NA Intergenic Intergenic -65715 NR_037183 619455 Hs.590784 NR_037183 ENSG00000277215 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 ncRNA 734-7 chr1 218801167 218801507 + 4 NA intron (NR_031644, intron 5 of 6) L1PA15|LINE|L1 117174 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 313-258 chr2 68185772 68185891 + 4 NA intron (NM_000945, intron 5 of 5) intron (NM_000945, intron 5 of 5) 27943 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 648-10 chr1 214713551 214713809 + 4 NA Intergenic AluJo|SINE|Alu 110485 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 629-97 chr5 25201538 25201823 + 4 NA intron (NR_136209, intron 1 of 3) MamRTE1|LINE|RTE-BovB 10727 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 664-33 chr12 44735571 44735829 + 4 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 139961 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 436-257 chr5 156960764 156961003 + 4 NA intron (NM_138379, intron 1 of 8) L2b|LINE|L2 2343 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 559-193 chr8 131344753 131344981 + 4 NA Intergenic L2c|LINE|L2 -303958 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 766-29 chr19 21386849 21387052 + 4 NA 3' UTR (NM_001355237, exon 5 of 5) 3' UTR (NM_001355237, exon 5 of 5) -10183 NM_175910 284443 Hs.656558 NM_145326 ENSG00000196268 ZNF493 - zinc finger protein 493 protein-coding 379-94 chr14 69761763 69761922 + 4 NA Intergenic Intergenic -5300 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 539-66 chr14 44784131 44784310 + 4 NA intron (NR_146457, intron 2 of 4) L2c|LINE|L2 14906 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 635-116 chr8 127399130 127399318 + 4 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) -1175 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 997-4 chr10 84950257 84950866 + 4 NA Intergenic Intergenic 248344 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 596-169 chr8 118303048 118303291 + 4 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -191350 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 732-4 chr1 180730141 180730531 + 4 NA intron (NR_137330, intron 2 of 12) L1PA15|LINE|L1 98314 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 1425-5 chr8 126650422 126651257 + 4 NA Intergenic Intergenic -92361 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 672-11 chr10 57768224 57768497 + 4 NA Intergenic L1MC1|LINE|L1 -463801 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 1370-2 chr10 33683135 33683750 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 89238 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 428-217 chr4 94821462 94821634 + 4 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 63593 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 1726 chr2 227008631 227009403 + 4 NA intron (NM_000092, intron 46 of 47) intron (NM_000092, intron 46 of 47) 155542 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 507-112 chr19 37660611 37660787 + 4 NA Intergenic MIR|SINE|MIR -4438 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 1106-2 chr10 131185206 131185558 + 4 NA intron (NM_174937, intron 4 of 11) L1MB5|LINE|L1 90164 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 586-123 chr5 74553497 74553751 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -16648 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 736-72 chr5 129673467 129673720 + 4 NA intron (NM_133638, intron 16 of 22) L1MEf|LINE|L1 -74501 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 702-38 chr19 56377686 56378039 + 4 NA non-coding (NR_003127, exon 7 of 7) non-coding (NR_003127, exon 7 of 7) -9479 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 504-223 chr6 40362387 40362575 + 4 NA Intergenic L1MC4|LINE|L1 -6475 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 756-20 chr18 38387972 38388316 + 4 NA Intergenic Intergenic 731009 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 1110-18 chr8 82013686 82014271 + 4 NA Intergenic MIR|SINE|MIR -171692 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 723-13 chr10 41884224 41884486 + 4 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 483690 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 869-23 chr17 61237536 61238024 + 4 NA intron (NM_001330413, intron 23 of 25) MIR|SINE|MIR 129924 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 695-19 chr10 130596287 130596596 + 4 NA Intergenic L1ME1|LINE|L1 366227 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 472-170 chr2 144718259 144718495 + 4 NA intron (NR_033870, intron 1 of 4) L1ME1|LINE|L1 50410 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 614-111 chr6 119924377 119924591 + 4 NA Intergenic L1M1|LINE|L1 -90695 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 465-13 chr1 237131110 237131283 + 4 NA intron (NM_001035, intron 1 of 104) L1MCc|LINE|L1 89012 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 1102-9 chr2 105941610 105942136 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 90026 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 825-4 chr10 65845017 65845485 + 4 NA Intergenic Intergenic 273826 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 820-61 chr8 48742985 48743459 + 4 NA Intergenic L1ME1|LINE|L1 -7911 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 735-81 chr8 101937476 101937861 + 4 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -46764 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 682-69 chr4 4351307 4351549 + 4 NA Intergenic LTR49-int|LTR|ERV1 -34828 NM_001040101 27065 Hs.518595 NM_014392 ENSG00000168824 NSG1 D4S234|D4S234E|NEEP21|P21 neuronal vesicle trafficking associated 1 protein-coding 740-2 chr1 49179171 49179416 + 4 NA intron (NM_001323575, intron 4 of 12) L2|LINE|L2 -78118 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 1181-11 chr4 32968139 32968583 + 4 NA Intergenic L1PA15|LINE|L1 617323 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 441-45 chr11 92849643 92849862 + 4 NA intron (NM_001008781, intron 18 of 24) intron (NM_001008781, intron 18 of 24) 65876 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 756-47 chr5 16072674 16072907 + 4 NA intron (NM_001102562, intron 3 of 3) intron (NM_001102562, intron 3 of 3) 107001 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 596-13 chr1 213839704 213839972 + 4 NA intron (NR_037850, intron 4 of 5) MIR|SINE|MIR -84911 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 601-107 chr4 45881521 45881770 + 4 NA Intergenic L1MB7|LINE|L1 242409 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 652-107 chr6 164304030 164304239 + 4 NA Intergenic Intergenic 517929 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 459-100 chr16 51217346 51217647 + 4 NA intron (NR_039672, intron 5 of 6) L1M4|LINE|L1 -66224 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 718-66 chr5 10218652 10218915 + 4 NA Intergenic Intergenic 31105 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 617-36 chr14 66593724 66594016 + 4 NA intron (NM_001024218, intron 1 of 21) L1MA8|LINE|L1 86463 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 795-46 chr6 44761382 44761770 + 4 NA Intergenic LTR49-int|LTR|ERV1 -209695 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 643-67 chr21 30697316 30697607 + 4 NA Intergenic Intergenic 21316 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 771-26 chr14 78867979 78868296 + 4 NA intron (NM_004796, intron 7 of 16) MER39|LTR|ERV1 -331845 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 631-50 chr17 56027224 56027628 + 4 NA Intergenic MIRb|SINE|MIR -126049 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 550-53 chr12 25544341 25544537 + 4 NA intron (NM_152590, intron 3 of 8) L1M1|LINE|L1 8844 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 1941 chr1 101659891 101661035 + 4 NA Intergenic L1MA9|LINE|L1 186617 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 674-65 chr4 45430780 45430954 + 4 NA Intergenic Intergenic 693187 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 1166-6 chr8 117388582 117389114 + 4 NA Intergenic Intergenic -131865 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 673-64 chr2 121669998 121670347 + 4 NA intron (NR_037857, intron 2 of 3) L1PBa|LINE|L1 20183 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 789-26 chr20 32915374 32915673 + 4 NA intron (NM_001143967, intron 17 of 26) MLT1A0-int|LTR|ERVL-MaLR 56600 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 476-170 chr22 29905277 29905454 + 4 NA intron (NM_153051, intron 1 of 18) MER8|DNA|TcMar-Tigger 22191 NM_153051 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 643-121 chr8 24947086 24947398 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR 6625 NR_106900 102465506 NR_106900 ENSG00000283327 MIR6841 hsa-mir-6841 microRNA 6841 ncRNA 953-17 chr2 221947104 221947539 + 4 NA Intergenic Intergenic -350826 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 527-176 chr3 99179689 99179928 + 4 NA Intergenic L1MEd|LINE|L1 -278113 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 350-311 chr3 67974352 67974554 + 4 NA Intergenic Intergenic -17139 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 369-190 chr2 31790559 31790711 + 4 NA Intergenic L1MA3|LINE|L1 13345 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 641-85 chr4 60211867 60212137 + 4 NA Intergenic L1M1|LINE|L1 -710617 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 833-11 chr18 22653288 22653676 + 4 NA Intergenic L1MB7|LINE|L1 133355 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 761-9 chr10 78244121 78244534 + 4 NA Intergenic THE1A|LTR|ERVL-MaLR -4298 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 1096-13 chr5 3043326 3043857 + 4 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat 125737 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 680-58 chr2 95242562 95242866 + 4 NA Intergenic L1PA16|LINE|L1 -31735 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 1349 chr4 23092684 23093308 + 4 NA Intergenic L2a|LINE|L2 378907 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 647-21 chr12 10080414 10080662 + 4 NA intron (NM_001297749, intron 1 of 3) intron (NM_001297749, intron 1 of 3) 18447 NM_001297749 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 474-31 chr10 48792282 48792515 + 4 NA intron (NM_020945, intron 23 of 61) intron (NM_020945, intron 23 of 61) 106935 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 716-52 chr3 141110809 141111078 + 4 NA intron (NM_080862, intron 2 of 2) MIRb|SINE|MIR 59596 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 1136-11 chr8 63557402 63557969 + 4 NA Intergenic MER31B|LTR|ERV1 91836 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 1113-6 chr9 80182134 80182596 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 207342 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 829-13 chr12 34544777 34545184 + 4 NA Intergenic ALR/Alpha|Satellite|centr 522484 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 532-42 chr12 34449089 34449324 + 4 NA Intergenic ALR/Alpha|Satellite|centr 426710 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 947-24 chr6 140228911 140229383 + 4 NA Intergenic Intergenic 23895 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 840-22 chr18 1988058 1988505 + 4 NA Intergenic Intergenic 583224 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 1007-7 chr20 55089747 55090171 + 4 NA Intergenic Intergenic -333084 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 337-425 chr5 6157050 6157181 + 4 NA Intergenic Intergenic 180177 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 1211-3 chr12 118655428 118656046 + 4 NA Intergenic MamTip3|DNA|hAT-Tip100 105942 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 676-78 chr3 19616105 19616392 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR -301317 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 1054-15 chr7 34620857 34621338 + 4 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -37121 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 530-165 chr3 79443296 79443528 + 4 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 31685 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 464-59 chr14 46919774 46919903 + 4 NA intron (NM_001113498, intron 10 of 16) intron (NM_001113498, intron 10 of 16) -268057 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 664-91 chr6 5073358 5073629 + 4 NA intron (NR_126015, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat -11993 NM_001145115 648791 Hs.653089 NM_001145115 ENSG00000219607 PPP1R3G - protein phosphatase 1 regulatory subunit 3G protein-coding 708-35 chr19 33899801 33900209 + 4 NA Intergenic L1MEg|LINE|L1 103135 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 761-33 chr20 15228050 15228429 + 4 NA intron (NM_001033087, intron 1 of 13) intron (NM_001033087, intron 1 of 13) 31399 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 327-524 chr9 79219783 79219944 + 4 NA Intergenic MIRb|SINE|MIR -74197 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 573-127 chr4 92072570 92072811 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR 204612 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 746-37 chr2 41488267 41488456 + 4 NA Intergenic Intergenic -389194 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 1442 chr11 114671099 114671974 + 4 NA Intergenic L1MA9|LINE|L1 -6991 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 478-138 chr2 60231664 60231803 + 4 NA Intergenic L1MEg|LINE|L1 151303 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 401-335 chr8 136983711 136983966 + 4 NA Intergenic Intergenic 429750 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 910-41 chr8 139099442 139099988 + 4 NA Intergenic Intergenic -185674 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 865-26 chr2 237493075 237493594 + 4 NA intron (NM_024101, intron 1 of 15) intron (NM_024101, intron 1 of 15) 6083 NM_024101 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 1078-7 chr2 221680585 221680962 + 4 NA Intergenic Intergenic -106571 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 990-16 chr21 30892383 30892784 + 4 NA Intergenic MER44A|DNA|TcMar-Tigger -11003 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 955-25 chr8 118877487 118877910 + 4 NA Intergenic LTR16A1|LTR|ERVL 74187 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 734-66 chr5 152983466 152983703 + 4 NA Intergenic MIR|SINE|MIR -11235 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 1023-2 chr1 40494643 40495093 + 4 NA intron (NM_001320178, intron 5 of 5) intron (NM_001320178, intron 5 of 5) -13851 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 974-2 chr12 47530731 47531177 + 4 NA Intergenic L1M2|LINE|L1 115946 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 520-257 chr6 74998750 74998943 + 4 NA Intergenic L1MEg|LINE|L1 129936 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 650-61 chr2 217546576 217546767 + 4 NA intron (NR_026597, intron 2 of 12) L1ME1|LINE|L1 209922 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 478-184 chr3 48255765 48256084 + 4 NA intron (NM_016089, intron 2 of 3) L1MC|LINE|L1 14820 NM_016089 51385 Hs.172602 NM_016089 ENSG00000164048 ZNF589 SZF1 zinc finger protein 589 protein-coding 799-30 chr2 103684572 103684886 + 4 NA Intergenic Intergenic -700300 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 618-17 chr10 123877670 123877866 + 4 NA intron (NM_198148, intron 2 of 13) intron (NM_198148, intron 2 of 13) 14039 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 719 chr1 40496030 40496375 + 4 NA 3' UTR (NM_001320179, exon 6 of 6) 3' UTR (NM_001320179, exon 6 of 6) -12517 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 478-196 chr3 131271453 131271629 + 4 NA intron (NM_001353036, intron 14 of 14) AluSq2|SINE|Alu -90304 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 749-58 chr2 229738398 229738751 + 4 NA Intergenic L1M4|LINE|L1 -24019 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 665-109 chr8 131676940 131677114 + 4 NA Intergenic AluSx3|SINE|Alu -227066 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 640-146 chr9 103288649 103288837 + 4 NA intron (NR_121578, intron 3 of 9) intron (NR_121578, intron 3 of 9) 36290 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 735-31 chr17 68602053 68602359 + 4 NA promoter-TSS (NM_001243746) promoter-TSS (NM_001243746) -839 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 888-10 chr13 33641849 33642139 + 4 NA intron (NM_001243476, intron 3 of 17) intron (NM_001243476, intron 3 of 17) 34800 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 507-114 chr19 52420686 52420947 + 4 NA Intergenic Intergenic -8332 NM_001291368 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 1598 chr1 173244812 173245533 + 4 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -37841 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 1341-6 chr8 136038647 136039304 + 4 NA Intergenic Intergenic -491823 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 582-31 chr12 58260242 58260420 + 4 NA Intergenic Intergenic 172439 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 498-61 chr11 115351093 115351261 + 4 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 17600 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 1246-9 chr4 172568897 172569406 + 4 NA intron (NM_001034845, intron 5 of 12) MLT1A0|LTR|ERVL-MaLR 119766 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 964-21 chr3 6548377 6548967 + 4 NA Intergenic Intergenic 256777 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 634-137 chr6 90071777 90072082 + 4 NA intron (NM_021813, intron 5 of 8) Tigger2|DNA|TcMar-Tigger 177460 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 752-75 chr8 124077158 124077457 + 4 NA intron (NM_001039112, intron 32 of 40) intron (NM_001039112, intron 32 of 40) -36525 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 1506-2 chr5 12251401 12252185 + 4 NA Intergenic Intergenic -323064 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 630-117 chr6 67142481 67142752 + 4 NA Intergenic LTR1B|LTR|ERV1 -912735 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 324-384 chr4 44115630 44115742 + 4 NA Intergenic Intergenic 98624 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 690-21 chr11 107081664 107081988 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -63350 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 1750 chr5 46017113 46017997 + 4 NA Intergenic ALR/Alpha|Satellite|centr -321175 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 762-32 chr19 58166396 58166781 + 4 NA Intergenic Intergenic -15799 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 852-23 chr2 12391529 12391885 + 4 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 192577 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 518-188 chr3 168253855 168254059 + 4 NA intron (NR_021485, intron 1 of 15) MLT1A0|LTR|ERVL-MaLR 4435 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 775-3 chr1 152424547 152424852 + 4 NA Intergenic Intergenic -10436 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 491-71 chr14 62630587 62630777 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL 414776 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 959-10 chr14 71879333 71879818 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -52596 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 557-218 chr9 86129002 86129177 + 4 NA intron (NR_110996, intron 1 of 4) MLT1A|LTR|ERVL-MaLR 1549 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 640-111 chr5 85202481 85202790 + 4 NA Intergenic L1PA13|LINE|L1 -817755 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 472-91 chr14 78533830 78534040 + 4 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 130216 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 803-21 chr19 56408206 56408503 + 4 NA intron (NM_001159860, intron 2 of 4) MER3|DNA|hAT-Charlie 4022 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 650-135 chr9 78792371 78792686 + 4 NA Intergenic Intergenic 353138 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 691-6 chr1 246009315 246009686 + 4 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 407912 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 468-183 chr22 22671384 22671645 + 4 NA Intergenic Intergenic 25202 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 932-25 chr6 988703 989144 + 4 NA intron (NR_027116, intron 2 of 3) L1MB7|LINE|L1 112409 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 567-159 chr6 73814822 73815082 + 4 NA intron (NM_001159588, intron 28 of 31) intron (NM_001159588, intron 28 of 31) 118749 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 827-52 chr7 39280907 39281171 + 4 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 48095 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 1137-8 chr8 52804516 52805192 + 4 NA Intergenic L1M5|LINE|L1 -90388 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 957-18 chr3 15941808 15942260 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR 68263 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 742-9 chr10 33467197 33467460 + 4 NA Intergenic Intergenic -132423 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 659-28 chr13 23679385 23679631 + 4 NA Intergenic Intergenic 100148 NM_001354985 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 739-13 chr11 112754309 112754674 + 4 NA Intergenic Intergenic -198689 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 640-91 chr4 35033198 35033525 + 4 NA Intergenic L1MB1|LINE|L1 -763614 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 1084-22 chr5 148516961 148517493 + 4 NA intron (NM_001040172, intron 4 of 5) L2a|LINE|L2 119834 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 456-63 chr12 62053267 62053396 + 4 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 139508 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 699-91 chr6 48989049 48989406 + 4 NA Intergenic L1PB1|LINE|L1 474026 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 423-104 chr17 71583731 71583978 + 4 NA Intergenic Intergenic -381675 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 753-66 chr9 78918655 78919093 + 4 NA Intergenic Intergenic 226792 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 497-248 chr6 70648761 70648904 + 4 NA Intergenic Intergenic -19051 NM_001044305 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 1279-7 chr4 103734462 103734922 + 4 NA Intergenic Intergenic -14707 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 1174-5 chr4 42114671 42115004 + 4 NA 3' UTR (NM_001159547, exon 6 of 6) 3' UTR (NM_001159547, exon 6 of 6) 37818 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 865-48 chr8 135379078 135379432 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -78201 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1359-2 chr19 37702353 37702987 + 4 NA intron (NM_001172677, intron 4 of 4) L1MEf|LINE|L1 -10355 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 819-18 chr20 52376366 52376628 + 4 NA Intergenic MER113|DNA|hAT-Charlie -184512 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 782-76 chr9 117510772 117510982 + 4 NA Intergenic L2b|LINE|L2 -95820 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 554-213 chr9 92690621 92690875 + 4 NA Intergenic L1MCa|LINE|L1 -20617 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 713-57 chr3 114311363 114311821 + 4 NA Intergenic Intergenic 4977 NR_030293 693153 NR_030293 ENSG00000284134 MIR568 MIRN568|hsa-mir-568 microRNA 568 ncRNA 756-56 chr8 51269315 51269623 + 4 NA Intergenic L1MC1|LINE|L1 539976 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 601-35 chr13 42964687 42964906 + 4 NA intron (NM_033255, intron 3 of 10) intron (NM_033255, intron 3 of 10) 27445 NM_001002264 94240 Hs.546467 NM_033255 ENSG00000133106 EPSTI1 BRESI1 epithelial stromal interaction 1 protein-coding 742-55 chr4 32422432 32422706 + 4 NA Intergenic L1MA9|LINE|L1 71531 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 657-53 chr2 139690556 139690799 + 4 NA Intergenic Intergenic 793353 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 884-17 chr2 27748267 27748669 + 4 NA Intergenic Tigger16a|DNA|TcMar-Tigger -23249 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 884-26 chr22 25005480 25005849 + 4 NA Intergenic Intergenic -22310 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 934-18 chr2 207025303 207025880 + 4 NA Intergenic L1MA5|LINE|L1 84482 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 751-81 chr9 30316530 30316775 + 4 NA Intergenic L1MCa|LINE|L1 91802 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 659-99 chr7 24442927 24443166 + 4 NA Intergenic Intergenic -130406 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 555-100 chr2 116466339 116466564 + 4 NA Intergenic Intergenic 1122636 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 848-35 chr5 13870620 13870927 + 4 NA exon (NM_001369, exon 24 of 79) exon (NM_001369, exon 24 of 79) 73707 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 619-81 chr22 33187956 33188180 + 4 NA Intergenic L1MA8|LINE|L1 79539 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 855-10 chr12 83785731 83786086 + 4 NA Intergenic Intergenic 1098753 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 596-136 chr5 152391123 152391366 + 4 NA TTS (NM_020167) TTS (NM_020167) 14035 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 1057-17 chr8 105232381 105233021 + 4 NA Intergenic L1MDa|LINE|L1 -85737 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 748-17 chr11 4555388 4555582 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 10294 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 788-4 chr10 67931421 67931697 + 4 NA intron (NM_001278185, intron 22 of 23) AluSx|SINE|Alu 40157 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 927-8 chr18 6252434 6252844 + 4 NA intron (NR_158611, intron 4 of 16) intron (NR_158611, intron 4 of 16) -4105 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 780-27 chr18 68476787 68477081 + 4 NA Intergenic Intergenic 238174 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 1375-3 chr10 66229569 66230114 + 4 NA intron (NM_001127384, intron 13 of 17) L1MA5|LINE|L1 658416 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 524-261 chr8 91672369 91672608 + 4 NA Intergenic MIRb|SINE|MIR 345192 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 742-53 chr3 94581321 94581579 + 4 NA Intergenic L1ME3A|LINE|L1 -356813 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 629-55 chr19 27732090 27732420 + 4 NA Intergenic ALR/Alpha|Satellite|centr -61176 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 992-10 chr16 86261355 86261753 + 4 NA intron (NR_104139, intron 3 of 5) MLT1J1|LTR|ERVL-MaLR 24693 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 603-170 chr8 135927054 135927310 + 4 NA Intergenic L1M5|LINE|L1 469726 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1174-6 chr4 119564835 119565248 + 4 NA intron (NM_033437, intron 5 of 20) intron (NM_033437, intron 5 of 20) 62696 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 995-6 chr14 45258781 45259332 + 4 NA Intergenic L1M4|LINE|L1 -5854 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 1272-6 chr4 186449208 186449917 + 4 NA intron (NR_033901, intron 1 of 6) AluSx|SINE|Alu 51496 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 801-47 chr5 140746937 140747369 + 4 NA Intergenic L1PREC2|LINE|L1 20994 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 1022-10 chr14 22360908 22361259 + 4 NA Intergenic L1P4a|LINE|L1 71670 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 591-113 chr4 62308005 62308257 + 4 NA Intergenic L1MA3|LINE|L1 -146366 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1572-2 chr19 29341114 29341915 + 4 NA intron (NR_040029, intron 9 of 9) L1M4|LINE|L1 -128363 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 796-30 chr2 180404180 180404550 + 4 NA Intergenic HSMAR2|DNA|TcMar-Mariner -287739 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 322-157 chr14 73284670 73284797 + 4 NA intron (NM_001005743, intron 9 of 12) intron (NM_001005743, intron 9 of 12) -38732 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 656-79 chr3 53474478 53474652 + 4 NA Intergenic L1ME2z|LINE|L1 -20046 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 751-71 chr6 78029403 78029732 + 4 NA Intergenic L1MEg|LINE|L1 376528 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 818-49 chr5 61870493 61870959 + 4 NA Intergenic L2c|LINE|L2 -135028 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 448-273 chr8 52304446 52304613 + 4 NA intron (NR_148195, intron 2 of 3) L1M5|LINE|L1 -50037 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 587-88 chr20 43273539 43273879 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -83803 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 618-31 chr12 127907690 127907921 + 4 NA intron (NR_126452, intron 3 of 3) L1ME1|LINE|L1 -7605 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 662-105 chr9 32800957 32801212 + 4 NA Intergenic L1MC4|LINE|L1 17544 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 759-42 chr2 223393175 223393520 + 4 NA Intergenic L1MC3|LINE|L1 209014 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 1248-6 chr4 106396674 106397283 + 4 NA Intergenic L1M4c|LINE|L1 -29543 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 296-492 chr8 141915606 141915749 + 4 NA Intergenic L1ME3D|LINE|L1 -129364 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 669-119 chr9 4047329 4047568 + 4 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 104735 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 1006-26 chr7 15926492 15926982 + 4 NA Intergenic L1M1|LINE|L1 238359 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 520-281 chr7 53803518 53803720 + 4 NA intron (NR_038371, intron 1 of 5) intron (NR_038371, intron 1 of 5) 8312 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 603-171 chr8 137721022 137721296 + 4 NA Intergenic L1MD|LINE|L1 -307571 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 972-3 chr10 129731708 129732130 + 4 NA intron (NM_002412, intron 3 of 4) Charlie1b|DNA|hAT-Charlie 111455 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 982-7 chr11 5019569 5019965 + 4 NA Intergenic L1MA9|LINE|L1 20784 NM_001004755 119682 Hs.553559 NM_001004755 ENSG00000176798 OR51L1 OR11-31 olfactory receptor family 51 subfamily L member 1 protein-coding 736-93 chrX 40049488 40049743 + 4 NA Intergenic Intergenic 47851 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 1003-13 chr21 30927185 30927694 + 4 NA Intergenic L1M2|LINE|L1 -45859 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 783-23 chr14 47241546 47241835 + 4 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 101556 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 568-39 chr12 81942008 81942200 + 4 NA Intergenic MLT2A1|LTR|ERVL -11615 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 549-167 chr5 81636587 81636886 + 4 NA intron (NM_012446, intron 2 of 16) intron (NM_012446, intron 2 of 16) 114517 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 860-38 chr5 14079895 14080171 + 4 NA Intergenic Intergenic -63309 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 549-139 chr3 69264646 69264806 + 4 NA intron (NM_015123, intron 5 of 22) intron (NM_015123, intron 5 of 22) 121362 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 369-124 chr14 82833819 82834004 + 4 NA Intergenic (ATTTTT)n|Simple_repeat|Simple_repeat 191279 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1051-11 chr4 57983661 57984078 + 4 NA Intergenic Intergenic 552459 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 1224-8 chr5 174593858 174594434 + 4 NA Intergenic Intergenic -130436 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 970-11 chr17 56075053 56075537 + 4 NA Intergenic MIRb|SINE|MIR -78180 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 636-17 chr10 53925974 53926310 + 4 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -560088 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 875-42 chrX 76862717 76863096 + 4 NA intron (NR_110403, intron 1 of 3) intron (NR_110403, intron 1 of 3) 56454 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 887-10 chr17 47372753 47373218 + 4 NA intron (NM_001195192, intron 9 of 21) L1M1|LINE|L1 49030 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 640-134 chr8 87234380 87234556 + 4 NA intron (NM_173538, intron 5 of 10) Tigger1|DNA|TcMar-Tigger 368053 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 464-108 chr2 17423319 17423557 + 4 NA Intergenic Intergenic 95002 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 633-33 chr12 118812947 118813190 + 4 NA Intergenic Intergenic 20468 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 607-74 chr2 65809041 65809271 + 4 NA Intergenic L1M5|LINE|L1 -376557 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 785-7 chr1 111852585 111852970 + 4 NA TTS (NR_046783) TTS (NR_046783) 4128 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 575-127 chr3 154364479 154364651 + 4 NA intron (NM_001038705, intron 3 of 3) MSTC-int|LTR|ERVL-MaLR -40068 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 728-66 chr4 56092858 56093215 + 4 NA Intergenic MIRb|SINE|MIR -77159 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 1265 chr1 241304562 241305035 + 4 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 51028 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 648-8 chr1 181982861 181983179 + 4 NA Intergenic L2a|LINE|L2 78692 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 700-81 chr5 71983077 71983338 + 4 NA Intergenic L1ME3D|LINE|L1 -124268 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 610-176 chr8 129222389 129222642 + 4 NA intron (NR_033916, intron 2 of 2) L1ME4a|LINE|L1 18725 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 770-35 chr2 64955504 64955852 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR -23231 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 1288-3 chr19 29359082 29359595 + 4 NA intron (NR_040029, intron 9 of 9) L1MA8|LINE|L1 -146187 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 436-286 chr7 48777527 48777667 + 4 NA Intergenic Intergenic -146950 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 866-20 chr16 77138682 77139087 + 4 NA Intergenic Intergenic -52306 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 580-120 chr3 127057097 127057364 + 4 NA Intergenic HAL1|LINE|L1 68636 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 705-66 chr22 27119940 27120296 + 4 NA Intergenic LTR16C|LTR|ERVL -59600 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 923-8 chr15 58326842 58327337 + 4 NA Intergenic L1PA16|LINE|L1 -104902 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 460-135 chr2 38037013 38037237 + 4 NA promoter-TSS (NR_102712) promoter-TSS (NR_102712) -784 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 1052-11 chr19 27362333 27362941 + 4 NA Intergenic ALR/Alpha|Satellite|centr -430794 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 388-258 chr4 125238068 125238246 + 4 NA Intergenic Intergenic -78255 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 670-127 chr8 126679960 126680205 + 4 NA Intergenic Intergenic -121604 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 696-111 chr8 126081364 126081655 + 4 NA Intergenic Intergenic -130312 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 629-78 chr22 25890228 25890493 + 4 NA intron (NM_001318245, intron 25 of 43) Tigger13a|DNA|TcMar-Tigger 148172 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 385-355 chr7 40559111 40559282 + 4 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 420743 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 630-80 chr22 47828077 47828370 + 4 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 196549 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 831-12 chr15 58713839 58714245 + 4 NA intron (NM_001320570, intron 2 of 14) AluSc|SINE|Alu -20435 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 1320 chr10 39351829 39352526 + 4 NA Intergenic ALR/Alpha|Satellite|centr 655581 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 779-23 chr16 46529266 46529504 + 4 NA intron (NR_026556, intron 7 of 16) intron (NR_026556, intron 7 of 16) 39712 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 730-5 chr1 172277699 172277978 + 4 NA intron (NR_146559, intron 16 of 20) intron (NR_146559, intron 16 of 20) -133003 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 668-19 chr12 45587792 45588145 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL 139953 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 610-97 chr20 33241938 33242150 + 4 NA intron (NM_001243193, intron 6 of 8) intron (NM_001243193, intron 6 of 8) 6048 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 580-131 chr4 31481645 31481907 + 4 NA Intergenic MIRb|SINE|MIR -24768 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 550-214 chr7 41061495 41061785 + 4 NA Intergenic Intergenic -39964 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 800-46 chr4 35949826 35950156 + 4 NA Intergenic Intergenic 293948 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 1225-7 chr6 53668368 53668892 + 4 NA Intergenic L2b|LINE|L2 -2874 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 746-12 chr10 49658720 49659017 + 4 NA intron (NM_001142929, intron 13 of 14) HAL1|LINE|L1 -20783 NM_001042427 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 1018 chr1 46130172 46130627 + 4 NA intron (NM_001303427, intron 1 of 9) intron (NM_001303427, intron 1 of 9) 274 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 950-8 chr12 114209051 114209608 + 4 NA Intergenic L1PA6|LINE|L1 32441 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 1443-6 chr6 49129518 49130104 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR 333442 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 968-11 chr2 214388776 214389135 + 4 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -22099 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 850-20 chr2 105459424 105459782 + 4 NA Intergenic Intergenic -21090 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 468-323 chr8 126814926 126815138 + 4 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -198122 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 754-49 chr3 24691125 24691432 + 4 NA Intergenic Intergenic -138045 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 681-9 chr11 24716765 24717077 + 4 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 219868 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 664-83 chr4 166969678 166970009 + 4 NA intron (NM_001204355, intron 2 of 8) intron (NM_001204355, intron 2 of 8) 264583 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 1501-2 chr5 67563214 67563920 + 4 NA Intergenic L1PA14|LINE|L1 83222 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 678-113 chr9 117910514 117910724 + 4 NA Intergenic L1PB1|LINE|L1 206216 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 1003-10 chr2 28510959 28511348 + 4 NA intron (NM_001170585, intron 1 of 56) L1MEg|LINE|L1 15082 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 940-13 chr2 63342529 63342989 + 4 NA intron (NR_148704, intron 13 of 18) L1MA4|LINE|L1 95248 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 2092-3 chr7 1335928 1336842 + 4 NA Intergenic L1MEc|LINE|L1 103513 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 1224-3 chr21 30979871 30980398 + 4 NA Intergenic MER58B|DNA|hAT-Charlie 58342 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 604-78 chr2 29588795 29589036 + 4 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -113538 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 643-81 chr4 448004 448226 + 4 NA intron (NM_133474, intron 2 of 2) L1MA6|LINE|L1 26094 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 573-7 chr1 106308523 106308693 + 4 NA Intergenic L1MA4|LINE|L1 -280355 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 730-25 chr19 50468411 50468602 + 4 NA intron (NM_138411, intron 3 of 4) L2a|LINE|L2 -8001 NM_175063 284361 Hs.448941 NM_175063 ENSG00000161671 EMC10 C19orf63|HSM1|HSS1 ER membrane protein complex subunit 10 protein-coding 878-52 chr8 120215903 120216270 + 4 NA intron (NM_021110, intron 13 of 47) intron (NM_021110, intron 13 of 47) 90984 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 651-96 chr5 8983856 8984280 + 4 NA Intergenic Intergenic 69827 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 355-322 chr3 66353259 66353460 + 4 NA intron (NM_001350992, intron 5 of 8) MIR|SINE|MIR 132356 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 740-4 chr1 105010055 105010243 + 4 NA Intergenic L1MCb|LINE|L1 608786 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 751-53 chr4 170278493 170278807 + 4 NA intron (NR_125889, intron 2 of 2) L2|LINE|L2 52059 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 604-24 chr10 102981246 102981516 + 4 NA intron (NM_199076, intron 1 of 6) HAL1|LINE|L1 -63046 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 750-73 chr8 134316943 134317315 + 4 NA Intergenic Tigger17a|DNA|TcMar-Tigger -280942 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1121 chr11 63475451 63476028 + 4 NA intron (NM_054108, intron 3 of 5) L1M4a2|LINE|L1 15428 NM_001146728 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 334-283 chr2 138427499 138427663 + 4 NA Intergenic L1MC5|LINE|L1 -74189 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 552-12 chr1 219538592 219538753 + 4 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 18652 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 526-5 chr1 78957636 78957812 + 4 NA intron (NM_022159, intron 2 of 14) Tigger1|DNA|TcMar-Tigger 49006 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 644-37 chr2 14271692 14271878 + 4 NA intron (NR_103814, intron 2 of 3) MIRc|SINE|MIR 129173 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 1655-5 chr8 132693194 132694021 + 4 NA Intergenic L2a|LINE|L2 -18062 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 1024-9 chr10 48746813 48747242 + 4 NA intron (NM_020945, intron 12 of 61) L1MEd|LINE|L1 61564 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 722-36 chr16 11218377 11218716 + 4 NA Intergenic Intergenic 37636 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 531-262 chr9 70425771 70426027 + 4 NA Intergenic MIR|SINE|MIR -11242 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 518-197 chr4 43294339 43294569 + 4 NA Intergenic L2c|LINE|L2 198089 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 1007-14 chr5 58866656 58867050 + 4 NA Intergenic Intergenic 133045 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 969-2 chr10 22945343 22945752 + 4 NA intron (NM_001282747, intron 2 of 15) intron (NM_001282747, intron 2 of 15) 17494 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 609-60 chr2 147230315 147230542 + 4 NA Intergenic Intergenic -614089 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 1790 chr5 5624848 5626049 + 4 NA Intergenic Intergenic 202771 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 497-32 chr10 126791100 126791301 + 4 NA Intergenic L1MCa|LINE|L1 -114209 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 665-81 chr5 155570916 155571222 + 4 NA Intergenic L1MEg|LINE|L1 557314 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 696-58 chr2 84836688 84836964 + 4 NA 3' UTR (NM_001307978, exon 5 of 5) 3' UTR (NM_001307978, exon 5 of 5) 44258 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 532-189 chr4 91584550 91584723 + 4 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 692666 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 789-7 chr10 131572464 131572799 + 4 NA Intergenic Intergenic 217568 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 609-61 chr2 152959962 152960172 + 4 NA Intergenic Intergenic 241430 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 718-79 chr6 40106227 40106578 + 4 NA Intergenic Intergenic -171940 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 757-12 chr12 125817944 125818226 + 4 NA Intergenic MER77|LTR|ERVL 165289 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 545-96 chr18 55937806 55938060 + 4 NA Intergenic MIRb|SINE|MIR -17734 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 708-26 chr15 26833764 26833968 + 4 NA Intergenic L1MB7|LINE|L1 -33196 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 304-323 chr3 4182026 4182156 + 4 NA Intergenic MER115|DNA|hAT-Tip100 -121213 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 723-33 chr2 22715005 22715267 + 4 NA Intergenic L1MA4A|LINE|L1 178657 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 881-43 chrUn_KI270757v1 15338 15699 + 4 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 563-149 chr5 13153957 13154200 + 4 NA Intergenic Intergenic -121192 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 1002-18 chr6 164164095 164164470 + 4 NA Intergenic MIR3|SINE|MIR -492798 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 688-70 chr21 27454476 27454762 + 4 NA Intergenic Intergenic -267760 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 287-228 chr21 7258756 7258935 + 4 NA Intergenic FRAM|SINE|Alu -171792 NM_001322044 102724219 Hs.743984 NM_001322044 LOC102724219 - uncharacterized LOC102724219 protein-coding 592-120 chr3 158030948 158031188 + 4 NA Intergenic Intergenic 75095 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 680-89 chr4 73969891 73970123 + 4 NA Intergenic L1PREC2|LINE|L1 12020 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 524-202 chr5 71930358 71930556 + 4 NA Intergenic Intergenic -177018 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 746-26 chr15 60888953 60889280 + 4 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 207547 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 503-56 chr11 81541408 81541574 + 4 NA Intergenic Intergenic 349345 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 482-109 chr18 64116380 64116566 + 4 NA intron (NR_033881, intron 1 of 9) intron (NR_033881, intron 1 of 9) 12382 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 1069-4 chr12 39558656 39559126 + 4 NA intron (NM_005164, intron 9 of 9) L1MA6|LINE|L1 60912 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 656-64 chr2 137418508 137418710 + 4 NA intron (NM_001316349, intron 14 of 27) L1MA4|LINE|L1 509323 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 715-58 chr4 43550604 43550933 + 4 NA Intergenic L1MA1|LINE|L1 -58225 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 643-55 chr2 125271463 125271681 + 4 NA Intergenic Intergenic 846413 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 648-109 chr5 30681313 30681544 + 4 NA Intergenic L1MA8|LINE|L1 -512258 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1039 chr1 71361475 71361856 + 4 NA Intergenic Intergenic 280341 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 1080-11 chr16 71445524 71445928 + 4 NA Intergenic Intergenic -3672 NM_001367365 915-32 chr9 136775928 136776414 + 4 NA Intergenic AluY|SINE|Alu -11653 NM_203347 389812 Hs.413902 NM_203347 ENSG00000177984 LCN15 PRO6093|UNQ2541 lipocalin 15 protein-coding 1071-9 chr2 21429334 21429775 + 4 NA Intergenic Intergenic 281098 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 858-40 chr7 41352920 41353305 + 4 NA Intergenic Intergenic 251508 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 1123-8 chr17 54263633 54264286 + 4 NA Intergenic Intergenic 441032 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 1026-5 chr11 84014825 84015468 + 4 NA intron (NM_001142699, intron 11 of 27) intron (NM_001142699, intron 11 of 27) 258134 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 912 chr1 18756146 18756571 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR 103303 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 676-91 chr4 97427129 97427452 + 4 NA intron (NR_102713, intron 1 of 5) intron (NR_102713, intron 1 of 5) 60364 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 546-34 chr11 26718865 26719043 + 4 NA intron (NM_178498, intron 1 of 14) intron (NM_178498, intron 1 of 14) 3106 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 996-2 chr1 81399371 81400003 + 4 NA intron (NM_001366003, intron 2 of 27) L1MA5|LINE|L1 93292 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 681-29 chr18 35633693 35634014 + 4 NA Intergenic Intergenic -20716 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 841-21 chr22 47267002 47267376 + 4 NA Intergenic Intergenic -78382 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 1118-4 chr12 37880832 37881281 + 4 NA Intergenic ALR/Alpha|Satellite|centr -435718 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 782-43 chr3 40246984 40247309 + 4 NA intron (NM_001284424, intron 12 of 15) L4_A_Mam|LINE|RTE-X 62552 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 764-73 chrX 14408096 14408598 + 4 NA Intergenic Intergenic -120951 NM_001171942 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 489-109 chr17 68830512 68830719 + 4 NA Intergenic Charlie2a|DNA|hAT-Charlie 124777 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 582-44 chr15 26239349 26239533 + 4 NA Intergenic Intergenic 123628 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 1090-10 chr8 29505375 29505759 + 4 NA Intergenic L1PA16|LINE|L1 -154883 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 633-47 chr16 13164789 13165017 + 4 NA intron (NM_001145204, intron 2 of 4) L1MEc|LINE|L1 263305 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 669-117 chr8 136452279 136452469 + 4 NA Intergenic Intergenic -78424 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 874-35 chr9 4057357 4057733 + 4 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 94638 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 620-28 chr12 118480970 118481213 + 4 NA Intergenic HERVFH19-int|LTR|ERV1 104536 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 534-249 chr8 46009539 46009749 + 4 NA Intergenic ALR/Alpha|Satellite|centr 607999 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 777-33 chr2 76790809 76791226 + 4 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -194948 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 548-6 chr1 96597848 96598126 + 4 NA Intergenic Intergenic -123618 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 648-92 chr3 86679616 86679815 + 4 NA Intergenic L1PA16|LINE|L1 197772 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 328-37 chr1 222889568 222889726 + 4 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) -38777 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 916-10 chr15 64580076 64580456 + 4 NA intron (NM_015042, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 80846 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 891-30 chr5 79053387 79053834 + 4 NA intron (NM_013391, intron 4 of 15) MIRb|SINE|MIR 16064 NR_104002 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 624-14 chr10 50585247 50585525 + 4 NA intron (NM_147156, intron 2 of 10) intron (NM_147156, intron 2 of 10) 38570 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 411-312 chr9 81283273 81283453 + 4 NA Intergenic MER34A|LTR|ERV1 406172 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 741-15 chr12 46315617 46315823 + 4 NA Intergenic L1MB3|LINE|L1 -46677 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 728-25 chr13 48012812 48013222 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -11691 NM_003850 8803 Hs.743361 NM_003850 ENSG00000136143 SUCLA2 A-BETA|A-SCS|MTDPS5|SCS-betaA succinate-CoA ligase ADP-forming beta subunit protein-coding 670-51 chr18 28846397 28846564 + 4 NA Intergenic Intergenic -669350 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 388-178 chr20 10767078 10767264 + 4 NA Intergenic Intergenic 14081 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 543-147 chr20 17310936 17311147 + 4 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 84001 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 472-165 chr2 116656149 116656367 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR -1158433 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 458-148 chr2 178683581 178683790 + 4 NA intron (NM_001256850, intron 131 of 312) intron (NM_001256850, intron 131 of 312) -93241 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 555-66 chr16 47215806 47216009 + 4 NA intron (NM_030790, intron 14 of 17) intron (NM_030790, intron 14 of 17) 71839 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 780-33 chr20 39510926 39511272 + 4 NA Intergenic L1MD2|LINE|L1 -286351 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 822-14 chr14 71747280 71747641 + 4 NA Intergenic MER5A|DNA|hAT-Charlie 161162 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 1241-2 chr1 174536213 174536646 + 4 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 88465 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 450-121 chr18 77584209 77584364 + 4 NA Intergenic L1MC3|LINE|L1 334438 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 701-101 chr8 128978649 128978878 + 4 NA Intergenic Intergenic -12762 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 644-72 chr4 125020764 125020932 + 4 NA Intergenic Intergenic -295564 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 661-93 chr8 141548863 141549134 + 4 NA Intergenic Intergenic -41768 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 1887 chr6 61519143 61520308 + 4 NA Intergenic ALR/Alpha|Satellite|centr -54405 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 948-4 chr10 43614933 43615336 + 4 NA intron (NM_145312, intron 4 of 4) intron (NM_145312, intron 4 of 4) 8696 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 657-4 chr1 59799196 59799486 + 4 NA Intergenic L1M4|LINE|L1 -15608 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 1022-7 chr11 34942916 34943274 + 4 NA intron (NM_003477, intron 2 of 10) intron (NM_003477, intron 2 of 10) 1258 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 305-360 chr3 112226134 112226218 + 4 NA intron (NM_001320531, intron 12 of 27).2 L1MA5|LINE|L1 68040 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 679-87 chr5 15841228 15841423 + 4 NA intron (NM_001278317, intron 2 of 3) L1ME4b|LINE|L1 -93857 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 687-122 chr8 126435074 126435399 + 4 NA Intergenic Intergenic 109741 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 1004-13 chr4 100766951 100767332 + 4 NA Intergenic L1MC1|LINE|L1 -92028 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 1065-2 chr10 111159560 111160196 + 4 NA Intergenic Intergenic 45587 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 803-4 chr1 113267984 113268397 + 4 NA Intergenic Intergenic -61937 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 454-287 chr7 30113458 30113617 + 4 NA intron (NM_001350973, intron 13 of 13) L1MB7|LINE|L1 -21449 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 804-27 chr18 2025200 2025588 + 4 NA Intergenic Intergenic 546111 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 554-164 chr4 142655569 142655800 + 4 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 190851 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 624-114 chr7 37387754 37388027 + 4 NA intron (NM_001206480, intron 1 of 21) AluJr|SINE|Alu -34222 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 1497 chr10 32600803 32601428 + 4 NA intron (NM_001321115, intron 19 of 43) intron (NM_001321115, intron 19 of 43) 154975 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 538-171 chr4 52147927 52148157 + 4 NA Intergenic Tigger13a|DNA|TcMar-Tigger 96738 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 1052-4 chr11 24604527 24605089 + 4 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 107755 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 707-87 chr5 171789481 171789737 + 4 NA intron (NM_001289970, intron 1 of 3) L1ME2|LINE|L1 3737 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 510-122 chr19 37613688 37613869 + 4 NA 3' UTR (NM_001172226, exon 4 of 4) 3' UTR (NM_001172226, exon 4 of 4) 18902 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 757-31 chr2 218050948 218051284 + 4 NA intron (NR_034176, intron 2 of 13) SVA_E|Retroposon|SVA 10174 NR_002712 3580 Hs.647858 NR_002712 CXCR2P1 CXCR2P|IL8RBP C-X-C motif chemokine receptor 2 pseudogene 1 pseudo 744-78 chr8 144913758 144914178 + 4 NA Intergenic MER4B-int|LTR|ERV1 -11791 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 281-447 chr8 128940630 128940715 + 4 NA Intergenic Intergenic 25329 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 713-14 chr11 18437054 18437402 + 4 NA intron (NM_017448, intron 5 of 7) intron (NM_017448, intron 5 of 7) -18628 NM_001144071 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 753-61 chr8 134998778 134999151 + 4 NA Intergenic Intergenic 149029 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 535-242 chr8 84212756 84212983 + 4 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 28203 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1060-13 chr3 41564705 41565272 + 4 NA intron (NR_136342, intron 30 of 34) Tigger3b|DNA|TcMar-Tigger 365483 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 515-30 chr10 122756416 122756580 + 4 NA promoter-TSS (NR_003570) promoter-TSS (NR_003570) -196 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 905-19 chr20 52896980 52897360 + 4 NA Intergenic L1ME3Cz|LINE|L1 -75188 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 732-21 chr12 10462397 10462649 + 4 NA Intergenic L1PA14|LINE|L1 -7838 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 535-178 chr4 30877850 30878177 + 4 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 157644 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 650-7 chr10 75412318 75412637 + 4 NA Intergenic Intergenic 3320 NR_110304 101929234 Hs.694695 NR_110304 LOC101929234 - uncharacterized LOC101929234 ncRNA 779-5 chr1 175770429 175770828 + 4 NA Intergenic Intergenic -27033 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 600-64 chr2 79306636 79306821 + 4 NA Intergenic L1ME3Cz|LINE|L1 -146975 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 857-18 chr12 44344952 44345424 + 4 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 509107 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 615-121 chr6 54208610 54208911 + 4 NA intron (NM_138569, intron 10 of 12) intron (NM_138569, intron 10 of 12) 97317 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 683-11 chr10 113791114 113791378 + 4 NA Intergenic Intergenic -13192 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 692-30 chr16 3222425 3222695 + 4 NA 3' UTR (NM_001145446, exon 5 of 5) 3' UTR (NM_001145446, exon 5 of 5) 6998 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 571-100 chr22 40335195 40335426 + 4 NA 3' UTR (NM_001024843, exon 24 of 24) 3' UTR (NM_001024843, exon 24 of 24) -11190 NM_001317923 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 503-245 chr6 71464991 71465216 + 4 NA Intergenic L1MEg|LINE|L1 44076 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 621-53 chr2 24518176 24518411 + 4 NA intron (NM_001362952, intron 1 of 23) L1ME1|LINE|L1 26416 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 1059-12 chr7 41163903 41164426 + 4 NA Intergenic L2a|LINE|L2 62560 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 569-160 chr6 166219912 166220152 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie -16937 NR_125862 101929297 Hs.434661 NR_125862 ENSG00000233365 LOC101929297 - uncharacterized LOC101929297 ncRNA 658-40 chr13 96545668 96545939 + 4 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 118574 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 737-5 chr1 197724359 197724651 + 4 NA intron (NR_125340, intron 2 of 19) intron (NR_125340, intron 2 of 19) 50975 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 598-99 chr4 89332375 89332747 + 4 NA Intergenic Arthur1B|DNA|hAT-Tip100 -24761 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 502-279 chr8 132760894 132761105 + 4 NA promoter-TSS (NM_001145153) promoter-TSS (NM_001145153) -417 NM_001364885 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 649-59 chr20 6748829 6749081 + 4 NA Intergenic Intergenic -12819 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 639-92 chr4 175321283 175321546 + 4 NA Intergenic Intergenic 403056 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 943-10 chr16 72654128 72654566 + 4 NA intron (NR_159372, intron 1 of 7) L1ME2|LINE|L1 10623 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 878-40 chr6 36587010 36587302 + 4 NA Intergenic AluSx|SINE|Alu -7157 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 465-83 chr14 77359815 77360041 + 4 NA intron (NM_001346133, intron 1 of 5) intron (NM_001346133, intron 1 of 5) 13981 NM_001346134 283578 Hs.26403 NM_213601 ENSG00000100580 TMED8 FAM15B transmembrane p24 trafficking protein family member 8 protein-coding 812-27 chr18 10103990 10104318 + 4 NA Intergenic AluSz|SINE|Alu 190138 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 1364-2 chr16 8378973 8379816 + 4 NA Intergenic Intergenic 210444 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1317-10 chr8 121787959 121788564 + 4 NA Intergenic Intergenic -146821 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 1084-18 chr5 45905759 45906353 + 4 NA Intergenic L1MB7|LINE|L1 -209676 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 670-75 chr3 22850707 22850920 + 4 NA Intergenic Intergenic 351765 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 564-207 chr8 140050946 140051186 + 4 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 49469 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 626-21 chr10 129475328 129475584 + 4 NA intron (NM_002412, intron 1 of 4) intron (NM_002412, intron 1 of 4) 8215 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 474-203 chr4 42980209 42980434 + 4 NA intron (NM_001080476, intron 2 of 3) L1MA8|LINE|L1 87055 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 1070-8 chr13 106995740 106996086 + 4 NA Intergenic Intergenic 325050 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 442-98 chr16 76790495 76790774 + 4 NA Intergenic Intergenic -78302 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 721-63 chr4 43359210 43359534 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR 133171 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 987-4 chr17 34729233 34729612 + 4 NA Intergenic Intergenic 148673 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 468-284 chr6 119493470 119493767 + 4 NA Intergenic Intergenic -2316 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 773-43 chr7 415631 415851 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR 36316 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 470-246 chr7 26343269 26343419 + 4 NA intron (NM_001318199, intron 1 of 6) MIRb|SINE|MIR -17540 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 518-211 chr4 97105228 97105422 + 4 NA Intergenic Intergenic -261601 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 934-28 chr7 15060253 15060637 + 4 NA Intergenic Intergenic -85587 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 597-71 chr2 80182183 80182476 + 4 NA intron (NM_001282598, intron 7 of 17) MLT2A2|LTR|ERVL 122423 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 1019-18 chr5 24426480 24426914 + 4 NA Intergenic Intergenic 218281 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 788-31 chr2 204199463 204199687 + 4 NA Intergenic Intergenic 262827 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 592-13 chr10 34033661 34033985 + 4 NA Intergenic Intergenic -261143 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 1082-16 chr8 134237799 134238268 + 4 NA Intergenic L1MD2|LINE|L1 351537 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 901-37 chr8 79815170 79815616 + 4 NA intron (NR_110954, intron 3 of 5) intron (NR_110954, intron 3 of 5) 47251 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 572-143 chr5 89893496 89893834 + 4 NA Intergenic L1MA2|LINE|L1 123055 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 873-38 chr8 131738559 131738957 + 4 NA Intergenic Intergenic -165335 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 642-37 chr15 81532469 81532771 + 4 NA Intergenic L1ME4c|LINE|L1 -158407 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 668-23 chr14 30198520 30198763 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR -270794 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 852-7 chr1 191356166 191356455 + 4 NA Intergenic L1PA16|LINE|L1 -127812 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 929-14 chr18 1028667 1029114 + 4 NA Intergenic Intergenic -100897 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 745-65 chr6 66806815 66807139 + 4 NA Intergenic Intergenic 1019098 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 1419-2 chr14 62439773 62440356 + 4 NA Intergenic L1M2a|LINE|L1 -300091 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 680-5 chr1 73240725 73240972 + 4 NA Intergenic Intergenic -65322 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 880-38 chr6 57300577 57300870 + 4 NA Intergenic Intergenic -14082 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 839-18 chr18 4496711 4497131 + 4 NA Intergenic Intergenic -41614 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 933-3 chr10 23026160 23026533 + 4 NA intron (NM_001282745, intron 16 of 18) L1MDa|LINE|L1 -69233 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 605-20 chr12 13452366 13452619 + 4 NA Intergenic Intergenic -75747 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 1403-4 chr5 65881548 65882282 + 4 NA Intergenic L1M5|LINE|L1 -44639 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 820-66 chr8 139083262 139083678 + 4 NA Intergenic L1MC3|LINE|L1 -169429 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 568-51 chr14 62205168 62205367 + 4 NA Intergenic L1MCa|LINE|L1 -65294 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 977-9 chr2 108002950 108003350 + 4 NA intron (NM_021815, intron 6 of 8) intron (NM_021815, intron 6 of 8) 16626 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 1069-10 chr6 61824989 61825620 + 4 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 251174 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 566-49 chr14 63152565 63152797 + 4 NA Intergenic L1M7|LINE|L1 -51762 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 697-38 chr17 34814916 34815228 + 4 NA Intergenic Intergenic 146388 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 472-344 chr9 91667433 91667618 + 4 NA Intergenic L1ME4a|LINE|L1 -31180 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 446-130 chr18 11348288 11348444 + 4 NA Intergenic L1MA9|LINE|L1 -106112 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 746-78 chr8 74207091 74207305 + 4 NA Intergenic Intergenic 114163 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 1072-3 chr11 50617289 50617743 + 4 NA Intergenic ALR/Alpha|Satellite|centr 208369 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 630-122 chr6 166580841 166581208 + 4 NA intron (NM_001006932, intron 2 of 21) AluSx|SINE|Alu -36334 NM_001318938 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 660-16 chr11 83696438 83696735 + 4 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -14161 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 646-8 chr1 198049870 198050039 + 4 NA Intergenic L1MA2|LINE|L1 -107044 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 606-134 chr5 123631292 123631578 + 4 NA Intergenic L1PA13|LINE|L1 86018 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 709-94 chr8 127600153 127600500 + 4 NA Intergenic Intergenic -118187 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 326-545 chr8 115306779 115306945 + 4 NA Intergenic MLT2E|LTR|ERVL 361151 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 508-255 chr9 28058683 28058874 + 4 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -484912 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 264-349 chr6 16959767 16959895 + 4 NA Intergenic Intergenic -142427 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 832-47 chr9 21693636 21694025 + 4 NA Intergenic Intergenic -108806 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 564-175 chr6 137453277 137453526 + 4 NA Intergenic Intergenic 40993 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 497-94 chr17 67045857 67046039 + 4 NA intron (NM_000727, intron 1 of 3) intron (NM_000727, intron 1 of 3) 1394 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 568-32 chr11 111038272 111038477 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 58944 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 857-36 chr3 53653410 53653794 + 4 NA intron (NM_001128840, intron 4 of 47) L1ME1|LINE|L1 158991 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 715-70 chr5 117073933 117074149 + 4 NA Intergenic Intergenic -311832 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 850-11 chr13 104865159 104865501 + 4 NA Intergenic Intergenic -600537 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 591-133 chr5 92004218 92004518 + 4 NA Intergenic Intergenic -621051 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 292-360 chr5 130775859 130775946 + 4 NA Intergenic Intergenic 389354 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 656-49 chr2 18556183 18556375 + 4 NA intron (NM_001199103, intron 8 of 8) intron (NM_001199103, intron 8 of 8) 4374 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 322-308 chr22 21803255 21803382 + 4 NA intron (NM_002745, intron 3 of 8) L1MB8|LINE|L1 64362 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 730-11 chr11 37873407 37873783 + 4 NA Intergenic L1MEc|LINE|L1 -65006 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 557-4 chr1 42874104 42874297 + 4 NA intron (NR_104171, intron 2 of 3) L1PA15|LINE|L1 16578 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 691-20 chr13 58988830 58989011 + 4 NA Intergenic Intergenic -755803 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 513-76 chr14 62851942 62852254 + 4 NA intron (NM_139318, intron 7 of 10) L1MA4|LINE|L1 193360 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 1400-4 chr4 76326174 76326792 + 4 NA intron (NM_001042784, intron 21 of 23) L1MEg|LINE|L1 20457 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 540-75 chr15 25417614 25417849 + 4 NA intron (NM_001354543, intron 2 of 16) L1ME1|LINE|L1 20498 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 722-85 chrX 45179014 45179338 + 4 NA intron (NM_024689, intron 2 of 2) MER20|DNA|hAT-Charlie 21700 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 599-61 chr2 133793726 133794001 + 4 NA Intergenic L1MC3|LINE|L1 -225400 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 738-67 chr8 28272060 28272378 + 4 NA Intergenic Intergenic -45049 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 704-55 chr3 180362783 180362987 + 4 NA Intergenic L1MC1|LINE|L1 -51288 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 650-81 chr3 192114443 192114671 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -124073 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 801-30 chr2 96683067 96683422 + 4 NA intron (NM_001293083, intron 19 of 52) MLT1C|LTR|ERVL-MaLR 40480 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 1541 chr6 164917026 164917640 + 4 NA Intergenic Intergenic -95270 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 1303-3 chr22 34977218 34977830 + 4 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 20392 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 744-12 chr11 82019327 82019551 + 4 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -128603 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 486-107 chr16 50707357 50707578 + 4 NA intron (NR_163434, intron 2 of 12) L2a|LINE|L2 8087 NM_001293557 64127 Hs.592072 NM_022162 ENSG00000167207 NOD2 ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS nucleotide binding oligomerization domain containing 2 protein-coding 588-68 chr2 63107445 63107681 + 4 NA Intergenic L1M5|LINE|L1 11979 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 562-50 chr12 114190860 114191055 + 4 NA Intergenic MIRb|SINE|MIR 50813 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 572-183 chr8 135891117 135891345 + 4 NA Intergenic L1M4|LINE|L1 433775 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 960-25 chr2 240491225 240491682 + 4 NA intron (NM_017844, intron 11 of 13) L1MA4A|LINE|L1 -34753 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 607-139 chr7 92883099 92883407 + 4 NA intron (NR_110087, intron 2 of 2) L1MA7|LINE|L1 -46626 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 408-8 chr1 68425954 68426082 + 4 NA Intergenic L1M4|LINE|L1 23936 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 612-32 chr12 3662526 3662725 + 4 NA intron (NM_001144958, intron 7 of 19) intron (NM_001144958, intron 7 of 19) 90484 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 725-10 chr10 79950278 79950718 + 4 NA Intergenic L1PA15-16|LINE|L1 -1393 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 863-40 chr7 41669435 41669837 + 4 NA Intergenic Intergenic -24283 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 719-75 chr7 77215591 77215965 + 4 NA intron (NM_020879, intron 2 of 18) L1MC5|LINE|L1 -15959 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 816-7 chr13 73438378 73438673 + 4 NA Intergenic MIR|SINE|MIR -125719 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 2617 chr17 63128559 63130180 + 4 NA intron (NM_025185, intron 4 of 25) MIR|SINE|MIR 163134 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 642-25 chr12 3985975 3986150 + 4 NA Intergenic L1MEc|LINE|L1 -112614 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 816-35 chr5 12174643 12175094 + 4 NA Intergenic Intergenic -270422 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 1001-13 chr3 181356871 181357240 + 4 NA intron (NR_075091, intron 3 of 7) HAL1b|LINE|L1 85431 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 857-56 chrX 146560984 146561202 + 4 NA Intergenic AluJb|SINE|Alu -248678 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 650-111 chr6 156014822 156015131 + 4 NA Intergenic Intergenic 68179 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 1078-12 chr4 89449198 89449792 + 4 NA Intergenic Intergenic -141695 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 846-61 chrX 70230614 70230971 + 4 NA Intergenic L1ME4a|LINE|L1 -3863 NM_001013579 158833 Hs.407641 NM_001013579 ENSG00000204195 AWAT1 DGA2|DGAT2L3 acyl-CoA wax alcohol acyltransferase 1 protein-coding 583-34 chr11 85383471 85383652 + 4 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 243709 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 834-38 chr6 60230116 60230482 + 4 NA Intergenic ALR/Alpha|Satellite|centr -1343831 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 477-5 chr1 37938310 37938518 + 4 NA intron (NR_158630, intron 6 of 24) MIRb|SINE|MIR 3850 NM_001350228 3633 Hs.449942 NM_005540 ENSG00000204084 INPP5B 5PTase inositol polyphosphate-5-phosphatase B protein-coding 1134-3 chr12 4748836 4749236 + 4 NA intron (NM_017417, intron 6 of 10) L1MA2|LINE|L1 28636 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 488-63 chr12 61430183 61430323 + 4 NA Intergenic Intergenic 762586 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 907-27 chr8 67881973 67882526 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -69797 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 566-111 chr20 56902169 56902418 + 4 NA Intergenic AluSz6|SINE|Alu 272987 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 649-93 chr5 163611043 163611396 + 4 NA Intergenic Intergenic 105600 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 1398-8 chr8 129770638 129771332 + 4 NA intron (NM_031415, intron 3 of 13) L1MA9|LINE|L1 15639 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 993-23 chr7 33657571 33658121 + 4 NA Intergenic Intergenic -247069 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 422-265 chr6 107701297 107701487 + 4 NA TTS (NM_198081) TTS (NM_198081) 30758 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 632-15 chr11 77251520 77251758 + 4 NA intron (NM_182833, intron 11 of 16) L1M2a|LINE|L1 50027 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 929-36 chr8 138207390 138207895 + 4 NA intron (NM_015912, intron 7 of 19) L3|LINE|CR1 -124097 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 613-115 chr6 61995737 61995939 + 4 NA intron (NR_146874, intron 3 of 13) Kanga2_a|DNA|TcMar-Tc2 290387 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 713-29 chr17 68881047 68881337 + 4 NA exon (NM_007168, exon 30 of 38) exon (NM_007168, exon 30 of 38) 74200 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 480-133 chr19 53247817 53248088 + 4 NA intron (NM_001317998, intron 3 of 4) L1M4|LINE|L1 6898 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 513-220 chr5 31801786 31801950 + 4 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) 134291 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 352-375 chr4 82614955 82615075 + 4 NA non-coding (NR_024087, exon 2 of 4) non-coding (NR_024087, exon 2 of 4) 6422 NR_024088 439934 Hs.457189 NM_001033661 ENSG00000231782 LINC00575 C4orf11 long intergenic non-protein coding RNA 575 ncRNA 833-28 chr4 63343239 63343621 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1066020 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1808-2 chr2 217296041 217297111 + 4 NA intron (NR_133642, intron 2 of 5) L1MEg|LINE|L1 13843 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 614-92 chr4 95979500 95979736 + 4 NA Intergenic Intergenic 139525 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 724-41 chr2 197820061 197820366 + 4 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 15620 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 1223 chr1 213702051 213702714 + 4 NA Intergenic L1MA2|LINE|L1 -222367 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 356-389 chr5 32381840 32381965 + 4 NA intron (NM_016107, intron 15 of 19) intron (NM_016107, intron 15 of 19) 12573 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 797-14 chr12 54784465 54784776 + 4 NA Intergenic L1M2|LINE|L1 -69896 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 1206-7 chr5 110178902 110179525 + 4 NA Intergenic Intergenic 296031 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 682-27 chr14 40032847 40033207 + 4 NA Intergenic Charlie17|DNA|hAT-Charlie -600527 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 945-12 chr2 177038485 177038921 + 4 NA Intergenic Intergenic 173708 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 493-211 chr3 119152471 119152689 + 4 NA Intergenic L1MA4|LINE|L1 6415 NM_152539 152405 Hs.730099 NM_152539 ENSG00000163424 TEX55 C3orf30|TSCPA testis expressed 55 protein-coding 786-49 chr4 134975456 134975801 + 4 NA Intergenic Intergenic 147931 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 348-213 chr19 51931306 51931454 + 4 NA intron (NM_024840, intron 3 of 5) intron (NM_024840, intron 3 of 5) 3908 NM_001031721 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 620-50 chr18 9397382 9397602 + 4 NA intron (NM_020648, intron 4 of 4) intron (NM_020648, intron 4 of 4) 62719 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 629-77 chr21 32924427 32924669 + 4 NA Intergenic L1MA7|LINE|L1 -34340 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 887-12 chr17 65803346 65803802 + 4 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 22877 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 380-47 chr10 71151061 71151275 + 4 NA Intergenic Intergenic -61402 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 1079-11 chr8 52800829 52801299 + 4 NA Intergenic Intergenic -86598 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 1094-11 chr5 36706054 36706579 + 4 NA Intergenic Intergenic 99710 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 1038-5 chr14 54217148 54217575 + 4 NA Intergenic Intergenic -179507 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 459-324 chr9 7932312 7932482 + 4 NA Intergenic L1ME4a|LINE|L1 -132619 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 1436-3 chr8 128207114 128207764 + 4 NA Intergenic L2b|LINE|L2 57323 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 736-49 chr22 27357009 27357246 + 4 NA Intergenic L1ME3|LINE|L1 46476 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 781-63 chr8 105263231 105263476 + 4 NA Intergenic L1PA11|LINE|L1 -55085 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 794-16 chr12 103333508 103333804 + 4 NA intron (NM_001099336, intron 4 of 5) intron (NM_001099336, intron 4 of 5) 162312 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 702-68 chr3 177750342 177750626 + 4 NA intron (NR_047568, intron 3 of 3) Tigger3|DNA|TcMar-Tigger -66381 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 648-14 chr10 59383445 59383750 + 4 NA Intergenic Intergenic -20416 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 1616 chr14 66678603 66679610 + 4 NA intron (NM_001024218, intron 1 of 21) L1MA5|LINE|L1 171699 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 714-50 chr3 187092251 187092598 + 4 NA Intergenic L1MA7|LINE|L1 47072 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 1356-3 chr5 125789163 125789660 + 4 NA Intergenic L1ME3G|LINE|L1 296150 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 591-139 chr5 136285486 136285652 + 4 NA intron (NM_001167577, intron 2 of 10) intron (NM_001167577, intron 2 of 10) 16287 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 800-57 chr6 115344168 115344457 + 4 NA Intergenic L1ME3|LINE|L1 299523 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 790-7 chr10 129694631 129694961 + 4 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 148578 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 1000-6 chr14 86824975 86825293 + 4 NA Intergenic Intergenic -80644 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 497-42 chr11 80483095 80483285 + 4 NA Intergenic Intergenic 279613 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 988-4 chr11 101948754 101949160 + 4 NA intron (NM_020802, intron 4 of 10) intron (NM_020802, intron 4 of 10) -32435 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 236-396 chrX 104597502 104597607 + 4 NA intron (NM_017416, intron 1 of 10) L2|LINE|L2 31355 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 516-127 chr2 81856880 81857084 + 4 NA Intergenic L1MEg|LINE|L1 -390036 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1066-9 chr19 29138723 29139232 + 4 NA Intergenic LTR8B|LTR|ERV1 74174 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 962-9 chr18 80024080 80024556 + 4 NA intron (NM_001305564, intron 1 of 2) PRIMA4-int|LTR|ERV1 9618 NM_001305564 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 524-82 chr16 63052883 63053035 + 4 NA Intergenic Intergenic -1016521 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 1607 chr21 24420674 24421630 + 4 NA Intergenic Intergenic -7588 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 617-114 chr5 164334430 164334695 + 4 NA Intergenic Intergenic 132840 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 611-5 chr1 179474762 179474939 + 4 NA intron (NR_073544, intron 16 of 25) THE1D-int|LTR|ERVL-MaLR 101098 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 1214-3 chr12 133108253 133108811 + 4 NA TTS (NM_001300776) TTS (NM_001300776) 21941 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 941 chr1 101269822 101270192 + 4 NA Intergenic AluJr|SINE|Alu 33258 NM_001320730 1901 Hs.154210 NM_001400 ENSG00000170989 S1PR1 CD363|CHEDG1|D1S3362|ECGF1|EDG-1|EDG1|S1P1 sphingosine-1-phosphate receptor 1 protein-coding 836-49 chr5 96247132 96247435 + 4 NA intron (NR_130776, intron 1 of 4) Tigger15a|DNA|TcMar-Tigger 168145 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 1177-8 chr7 53667815 53668320 + 4 NA intron (NR_038371, intron 5 of 5) L1MB4|LINE|L1 143864 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 429-327 chr9 125982767 125982967 + 4 NA Intergenic MIR1_Amn|SINE|MIR 234684 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 858-32 chr3 136322399 136322727 + 4 NA intron (NM_000532, intron 10 of 14) L1M4c|LINE|L1 72223 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 582-105 chr4 43266480 43266679 + 4 NA Intergenic Intergenic 225964 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 698-45 chr20 21847565 21847845 + 4 NA Intergenic L1MB3|LINE|L1 142041 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 712-94 chr8 33058966 33059270 + 4 NA Intergenic L2b|LINE|L2 337283 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 824-5 chr10 80294624 80294973 + 4 NA Intergenic Intergenic -5140 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 840-19 chr16 78921770 78922172 + 4 NA intron (NM_001291997, intron 7 of 7) MER77B|LTR|ERVL 678766 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 1207-4 chr11 48690074 48690714 + 4 NA Intergenic ALR/Alpha|Satellite|centr 201601 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 652-51 chr16 72638305 72638588 + 4 NA intron (NR_159372, intron 1 of 7) L1MC4|LINE|L1 26524 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 1317-11 chr9 74451027 74451560 + 4 NA Intergenic L1MA4|LINE|L1 -46042 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 670-11 chr10 31624700 31624978 + 4 NA Intergenic Intergenic -225084 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 892-10 chr11 100009124 100009446 + 4 NA intron (NM_001243270, intron 8 of 23) intron (NM_001243270, intron 8 of 23) 453140 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 767-46 chr6 156142107 156142534 + 4 NA Intergenic L1ME1|LINE|L1 195523 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 733-7 chr10 44089506 44089873 + 4 NA Intergenic tRNA-Asn-AAC|tRNA|tRNA 177287 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 688-115 chr9 22321784 22321961 + 4 NA Intergenic MLT2C1|LTR|ERVL -124952 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 546-17 chr10 17219589 17219755 + 4 NA intron (NR_108060, intron 1 of 3) intron (NR_108060, intron 1 of 3) 7226 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 839-17 chr16 72449722 72449995 + 4 NA intron (NR_159371, intron 3 of 5) L1MA2|LINE|L1 215112 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 930-28 chr6 92301552 92302058 + 4 NA Intergenic L1MA1|LINE|L1 -611377 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 251-345 chr6 106810016 106810147 + 4 NA Intergenic HERV35I-int|LTR|ERV1 -22540 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 800-59 chr7 50244925 50245178 + 4 NA Intergenic L1ME5|LINE|L1 -59013 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 555-120 chr21 28530388 28530626 + 4 NA Intergenic L1MC2|LINE|L1 -8811 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 586-52 chr14 71770264 71770436 + 4 NA Intergenic Intergenic -161821 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 869-38 chr4 46114102 46114345 + 4 NA intron (NM_173536, intron 1 of 8) intron (NM_173536, intron 1 of 8) 9831 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 1026-8 chr16 3224090 3224713 + 4 NA exon (NM_001145446, exon 5 of 5) exon (NM_001145446, exon 5 of 5) 8839 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 1237 chr10 33741345 33741921 + 4 NA Intergenic L1MA8|LINE|L1 31047 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 756-53 chr8 13761879 13762214 + 4 NA Intergenic L1MA9|LINE|L1 132356 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 644-92 chr7 14647287 14647580 + 4 NA intron (NM_001350722, intron 13 of 25) L1MA5|LINE|L1 194017 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 1211 chr12 9762925 9763483 + 4 NA Intergenic Intergenic -2303 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 864-20 chr19 37103236 37103781 + 4 NA intron (NM_001329519, intron 4 of 4) L2|LINE|L2 25075 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 532-233 chr6 165103110 165103275 + 4 NA Intergenic MER4E|LTR|ERV1 206413 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 1593-2 chr7 64349260 64349991 + 4 NA 3' UTR (NM_001170905, exon 4 of 4) 3' UTR (NM_001170905, exon 4 of 4) 35664 NM_001170905 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 781-32 chr2 5787940 5788259 + 4 NA Intergenic Intergenic 24497 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 546-196 chr5 121689915 121690221 + 4 NA Intergenic Intergenic -161814 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 636-6 chr1 106308035 106308247 + 4 NA Intergenic L1MA4|LINE|L1 -279888 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 926-24 chr6 61365902 61366359 + 4 NA Intergenic ALR/Alpha|Satellite|centr -208000 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 703-75 chr5 107181575 107181894 + 4 NA Intergenic MIRb|SINE|MIR -170720 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 800-18 chr13 87650935 87651324 + 4 NA intron (NR_033829, intron 1 of 5) L1MC5a|LINE|L1 19834 NR_033829 642345 Hs.508337 NR_033829 ENSG00000228824 MIR4500HG - MIR4500 host gene ncRNA 456-32 chr10 55430057 55430216 + 4 NA intron (NM_001354404, intron 2 of 34) AluJb|SINE|Alu -168906 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 506-62 chr12 2203070 2203283 + 4 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 20305 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 771-75 chr6 40234933 40235280 + 4 NA Intergenic L1PA14|LINE|L1 120900 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 406-107 chr16 80538879 80539122 + 4 NA intron (NR_120307, intron 1 of 5) intron (NR_120307, intron 1 of 5) -1734 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 790-53 chr8 109192036 109192356 + 4 NA Intergenic Intergenic 105568 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 447-183 chr3 145991810 145992037 + 4 NA Intergenic Intergenic 77262 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 773-42 chr6 65464025 65464310 + 4 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 115637 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 398-318 chr7 29020743 29020858 + 4 NA intron (NM_001371256, intron 16 of 16) L1M5|LINE|L1 40833 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 593-100 chr3 88018178 88018449 + 4 NA Intergenic Intergenic 35737 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 564-12 chr10 19873585 19873745 + 4 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 57233 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 436-51 chr11 80022182 80022343 + 4 NA Intergenic L1M3|LINE|L1 -581232 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 733-17 chr14 62375824 62376200 + 4 NA Intergenic L1MCc|LINE|L1 -236039 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 526-108 chr19 30293933 30294094 + 4 NA Intergenic Intergenic -78371 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 520-231 chr5 37847053 37847373 + 4 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 6775 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 621-83 chr4 57917161 57917587 + 4 NA Intergenic Intergenic 491502 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 1269-10 chr8 138374616 138375291 + 4 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 122308 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 621-100 chr5 124240214 124240374 + 4 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 198226 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 1082-7 chr19 28068120 28068635 + 4 NA Intergenic MER31-int|LTR|ERV1 -274437 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 2294 chr4 31478210 31479197 + 4 NA Intergenic L1PA16|LINE|L1 -27841 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 575-207 chr8 139853894 139854133 + 4 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -150890 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1743 chr11 23444138 23444845 + 4 NA Intergenic Intergenic -25301 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 867-31 chr3 181791274 181791695 + 4 NA Intergenic Intergenic 79559 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 1104-2 chr14 41254576 41255332 + 4 NA Intergenic Intergenic 300243 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 548-8 chr1 109375020 109375240 + 4 NA intron (NM_002959, intron 1 of 19) L1MEc|LINE|L1 18227 NM_001205228 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 306-76 chr11 41165626 41165757 + 4 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 293945 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 700-50 chr2 114959733 114960073 + 4 NA intron (NM_001321910, intron 2 of 26) L1MB7|LINE|L1 -104670 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 890-8 chr11 133646690 133647119 + 4 NA Intergenic L1MC|LINE|L1 -114403 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 900-20 chr2 199872237 199872584 + 4 NA Intergenic Intergenic -21237 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 742-14 chr11 10235780 10236045 + 4 NA intron (NM_030962, intron 1 of 39) AluJb|SINE|Alu 58295 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 412-35 chr10 80928319 80928474 + 4 NA Intergenic L1ME1|LINE|L1 278599 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 690-71 chr3 60969637 60969986 + 4 NA intron (NR_148922, intron 3 of 3) L1MEg|LINE|L1 281641 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 1029-19 chr8 126052545 126052980 + 4 NA Intergenic Intergenic -101565 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1023-16 chr20 54550721 54551232 + 4 NA intron (NM_018431, intron 1 of 7) L1MD1|LINE|L1 75383 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 384-262 chr4 63087419 63087592 + 4 NA Intergenic Intergenic -925740 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 798-17 chr14 82198909 82199282 + 4 NA Intergenic MER115|DNA|hAT-Tip100 -443537 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 370-121 chr12 119492688 119492873 + 4 NA intron (NM_178499, intron 5 of 13) MIRb|SINE|MIR -100994 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 820-31 chr2 205589771 205590270 + 4 NA intron (NM_205863, intron 21 of 21) intron (NM_205863, intron 21 of 21) -92480 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 699-31 chr14 87297693 87297937 + 4 NA Intergenic L1MC5|LINE|L1 357479 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 704-87 chr8 128190211 128190474 + 4 NA Intergenic Intergenic 40226 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 988-31 chr5 150960878 150961179 + 4 NA Intergenic MER4-int|LTR|ERV1 -14444 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 510-73 chr14 54172793 54173077 + 4 NA Intergenic Intergenic -216044 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 588-81 chr2 240838464 240838612 + 4 NA Intergenic AluSz6|SINE|Alu -18230 NM_004321 547 Hs.516802 NM_004321 ENSG00000130294 KIF1A ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104 kinesin family member 1A protein-coding 559-80 chr18 65298850 65299031 + 4 NA Intergenic Intergenic -451312 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 914-30 chr8 129277901 129278343 + 4 NA Intergenic Intergenic -36882 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 616-101 chr3 3057207 3057407 + 4 NA 3' UTR (NM_001206956, exon 16 of 16) 3' UTR (NM_001206956, exon 16 of 16) 3838 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 340-538 chr8 88863545 88863631 + 4 NA Intergenic Intergenic -536105 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 396-341 chr7 124283615 124283771 + 4 NA Intergenic Intergenic 68403 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 1409-7 chr8 121962564 121963135 + 4 NA Intergenic MIR|SINE|MIR -321409 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 687-106 chr7 41843581 41843811 + 4 NA Intergenic L1MC1|LINE|L1 -140606 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 628-129 chr8 62548587 62548754 + 4 NA intron (NM_001304533, intron 1 of 6) L1ME4c|LINE|L1 299816 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 742-16 chr11 35753326 35753516 + 4 NA intron (NM_017583, intron 4 of 4) intron (NM_017583, intron 4 of 4) 90646 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 487-180 chr3 35906000 35906188 + 4 NA Intergenic Intergenic 161618 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 674-43 chr2 79629985 79630217 + 4 NA intron (NM_001282598, intron 1 of 17) MER74B|LTR|ERVL 19258 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 833-16 chr2 117515329 117515566 + 4 NA Intergenic Intergenic -299244 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 575-42 chr12 42062405 42062630 + 4 NA Intergenic Intergenic 82357 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 620-131 chr7 61921406 61921716 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1382495 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 660-2 chr1 80347035 80347350 + 4 NA Intergenic Intergenic -188563 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 869-33 chr2 160808546 160809038 + 4 NA Intergenic L1PA10|LINE|L1 -314985 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 540-237 chrX 94223085 94223331 + 4 NA Intergenic L2c|LINE|L2 549002 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 1047 chr1 113445942 113446399 + 4 NA intron (NM_001142782, intron 1 of 20) L1M4c|LINE|L1 55655 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 710-16 chr10 113600953 113601266 + 4 NA intron (NM_001322945, intron 34 of 40) intron (NM_001322945, intron 34 of 40) 48056 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 666-5 chr10 43000471 43000781 + 4 NA Intergenic Intergenic 3063 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 486-261 chr6 102228514 102228697 + 4 NA Intergenic Intergenic 829620 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 1000-25 chr8 29693728 29694310 + 4 NA Intergenic MER21C|LTR|ERVL 54090 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 1177-4 chr16 7741800 7742320 + 4 NA Intergenic MER99|DNA|hAT? 409215 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 749-44 chr18 53160211 53160543 + 4 NA intron (NM_005215, intron 8 of 28) L2a|LINE|L2 -76724 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 651-30 chr12 65575000 65575247 + 4 NA intron (NR_120434, intron 3 of 4) L1ME1|LINE|L1 -17812 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 824-32 chr4 43553181 43553549 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR -60822 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 395-230 chr3 114674944 114675052 + 4 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -50053 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 564-152 chr5 33250525 33250901 + 4 NA intron (NR_147008, intron 3 of 3) MER5B|DNA|hAT-Charlie 20978 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 596-177 chr9 74071276 74071669 + 4 NA Intergenic L1PA15|LINE|L1 -300059 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 874-4 chr11 2630407 2630897 + 4 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 69346 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 632-17 chr11 98154035 98154265 + 4 NA Intergenic LTR82A|LTR|ERVL -866799 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 1221-7 chr7 122113140 122113677 + 4 NA intron (NM_005763, intron 10 of 23) intron (NM_005763, intron 10 of 23) 30841 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 655-5 chr1 95842109 95842446 + 4 NA Intergenic Intergenic -149791 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 1755-2 chr4 122489074 122489855 + 4 NA Intergenic L1M2|LINE|L1 -32969 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 890-21 chr20 56015363 56015814 + 4 NA Intergenic MER102b|DNA|hAT-Charlie -10069 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 493-46 chr11 63397060 63397291 + 4 NA intron (NM_080866, intron 6 of 9) L1M1|LINE|L1 27390 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 410-267 chr6 149793382 149793571 + 4 NA intron (NM_001360452, intron 4 of 7) intron (NM_001360452, intron 4 of 7) 43735 NM_001360456 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 668-60 chr22 26147804 26148195 + 4 NA Intergenic L1M5|LINE|L1 -21463 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 1063-21 chr8 46858473 46858859 + 4 NA Intergenic BSR/Beta|Satellite|Satellite 17780 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 855-20 chr17 54978973 54979428 + 4 NA intron (NM_178509, intron 1 of 17) intron (NM_178509, intron 1 of 17) -10415 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 871-36 chr7 64722081 64722498 + 4 NA Intergenic Intergenic 43225 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 699-101 chr8 38640042 38640446 + 4 NA Intergenic L1ME3|LINE|L1 -38987 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 781-40 chr3 24751923 24752211 + 4 NA Intergenic MIRc|SINE|MIR -77256 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 1453-2 chr2 59616967 59617615 + 4 NA Intergenic L1MB7|LINE|L1 399583 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 825-42 chr5 109247133 109247401 + 4 NA intron (NR_149040, intron 3 of 3) intron (NR_149040, intron 3 of 3) 79102 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 554-23 chr1 247003658 247003844 + 4 NA intron (NR_037894, intron 1 of 6) MER101-int|LTR|ERV1 4306 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 1371-2 chr7 113532026 113532622 + 4 NA Intergenic L1M2a|LINE|L1 386685 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 612-120 chr5 174529834 174530077 + 4 NA Intergenic Intergenic 193601 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 992-20 chr7 80164914 80165317 + 4 NA intron (NM_001256414, intron 1 of 7) L3b|LINE|CR1 29331 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 523-49 chr11 19132799 19133065 + 4 NA intron (NM_001001483, intron 1 of 15) L1MEc|LINE|L1 15764 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 728-47 chr2 65724141 65724383 + 4 NA Intergenic Intergenic -291663 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 485-212 chr4 123729437 123729645 + 4 NA intron (NR_027105, intron 3 of 5) L1PA17|LINE|L1 -44723 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 692-2 chr1 73273608 73273835 + 4 NA Intergenic Intergenic -32449 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 338-309 chr21 28360337 28360444 + 4 NA Intergenic L1MB1|LINE|L1 -131723 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 620-52 chr18 14112708 14112919 + 4 NA intron (NM_145287, intron 2 of 2) L1M1|LINE|L1 19622 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 940-29 chr5 82442726 82443105 + 4 NA Intergenic LTR107_Mam|LTR|LTR 163453 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 475-288 chr8 118515970 118516124 + 4 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -104954 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 647-59 chr21 21013751 21014020 + 4 NA intron (NM_001352595, intron 1 of 14) Tigger1|DNA|TcMar-Tigger 15476 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 1596 chr1 209461545 209462364 + 4 NA Intergenic Intergenic 29821 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 536-9 chr1 104618187 104618400 + 4 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 545270 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 642-14 chr10 106887717 106888084 + 4 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 276806 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 672-119 chr9 75843920 75844209 + 4 NA Intergenic AluSx|SINE|Alu -46580 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 314-339 chr20 18841308 18841497 + 4 NA Intergenic L1M5|LINE|L1 -11199 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 794-14 chr12 40646558 40646931 + 4 NA Intergenic Intergenic -45695 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 554-137 chr20 62102741 62102937 + 4 NA Intergenic MSTB|LTR|ERVL-MaLR -19636 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 1526 chr1 23360393 23361200 + 4 NA 3' UTR (NM_001077195, exon 4 of 4) 3' UTR (NM_001077195, exon 4 of 4) 7590 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 1178-6 chr2 71725131 71725703 + 4 NA Intergenic HAL1|LINE|L1 258718 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 1153-13 chr3 173428926 173429549 + 4 NA intron (NM_001365932, intron 1 of 5) L1MA5|LINE|L1 31493 NM_001365931 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 559-161 chr6 75565320 75565589 + 4 NA Intergenic L1PA15-16|LINE|L1 -36055 NM_001304792 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 1108-15 chr5 130731005 130731565 + 4 NA Intergenic L1M4b|LINE|L1 433971 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 652-70 chr2 201503856 201504113 + 4 NA intron (NM_001168216, intron 11 of 12) L1MEc|LINE|L1 52244 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 652-8 chr1 219319934 219320255 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 145125 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 1341-2 chr5 100519383 100519943 + 4 NA Intergenic L1PBb|LINE|L1 -15711 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 634-81 chr2 150960104 150960341 + 4 NA Intergenic Intergenic 301641 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 308-36 chr1 205999260 205999385 + 4 NA intron (NM_001164522, intron 1 of 5) L1ME3G|LINE|L1 4073 NM_001164522 338382 Hs.534612 NM_177403 ENSG00000276600 RAB7B RAB7 RAB7B, member RAS oncogene family protein-coding 809 chr1 51928486 51928789 + 4 NA intron (NM_002867, intron 4 of 4) intron (NM_002867, intron 4 of 4) -49700 NM_002525 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 708-45 chr3 43528704 43529030 + 4 NA intron (NM_001346464, intron 12 of 13) AluJb|SINE|Alu 93059 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 714-4 chr1 111104314 111104578 + 4 NA Intergenic L1ME1|LINE|L1 -34937 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 750-32 chr2 21645595 21645949 + 4 NA Intergenic Intergenic 64880 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 665-108 chr8 109943418 109943637 + 4 NA Intergenic HERVL-int|LTR|ERVL 32244 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 659-130 chrX 17894906 17895102 + 4 NA Intergenic Intergenic -33667 NM_001172739 10742 Hs.446680 NM_021785 ENSG00000131831 RAI2 - retinoic acid induced 2 protein-coding 1082-10 chr2 104114726 104115237 + 4 NA Intergenic AluJb|SINE|Alu 293351 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 608-90 chr21 27289517 27289702 + 4 NA Intergenic Intergenic -322521 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 396-342 chr7 127090339 127090530 + 4 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) -32250 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 666-95 chr5 67743217 67743511 + 4 NA Intergenic Intergenic -49849 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 510-57 chr12 14530473 14530687 + 4 NA intron (NM_024829, intron 6 of 10) L1M4a1|LINE|L1 -37152 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 712-6 chr1 174587673 174587992 + 4 NA intron (NM_001366446, intron 13 of 25) L1MA3|LINE|L1 -112707 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 728-32 chr14 66314552 66314887 + 4 NA Intergenic MIRc|SINE|MIR -171652 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 224-117 chr17 60835127 60835203 + 4 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 157314 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 1715-2 chr18 9975690 9976589 + 4 NA Intergenic L1MEg|LINE|L1 62123 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 850-42 chr6 61180130 61180513 + 4 NA Intergenic LTR48|LTR|ERV1 -393809 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 529-10 chr10 20128115 20128260 + 4 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 311755 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 1084-26 chr8 86596372 86596714 + 4 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 82108 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 1159-7 chr2 107327780 107328157 + 4 NA intron (NR_049853, intron 1 of 3) L1MCb|LINE|L1 21557 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 663-24 chr12 5042442 5042774 + 4 NA Intergenic Intergenic -1271 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 500-230 chr5 69182390 69182557 + 4 NA Intergenic AluY|SINE|Alu -7110 NM_022909 64946 Hs.631967 NM_022909 ENSG00000153044 CENPH - centromere protein H protein-coding 1017-10 chr19 36888183 36888677 + 4 NA 3' UTR (NM_001171979, exon 6 of 6) 3' UTR (NM_001171979, exon 6 of 6) 27609 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 508-80 chr17 69438361 69438535 + 4 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 23751 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 818-58 chr7 15585061 15585397 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -23214 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 492-100 chr15 69938454 69938761 + 4 NA Intergenic Charlie16a|DNA|hAT-Charlie 103373 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 442-291 chr8 108113637 108113824 + 4 NA Intergenic L2c|LINE|L2 -30110 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 1257-4 chr3 13901457 13902077 + 4 NA Intergenic Intergenic -21696 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 857-41 chr4 62769589 62770080 + 4 NA Intergenic Intergenic -608069 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 654-128 chr8 127487917 127488145 + 4 NA Intergenic L1MDa|LINE|L1 -5892 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 538-241 chr8 118777982 118778220 + 4 NA Intergenic Intergenic -156138 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 1093-5 chr16 79854069 79854693 + 4 NA Intergenic L1PA8A|LINE|L1 59132 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 368-246 chr2 148475353 148475473 + 4 NA intron (NM_018328, intron 9 of 14) intron (NM_018328, intron 9 of 14) -169338 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 826-48 chr4 38931557 38931873 + 4 NA intron (NM_001350633, intron 9 of 12) intron (NM_001350633, intron 9 of 12) 63683 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 544-130 chr2 182707073 182707373 + 4 NA Intergenic L1M5|LINE|L1 -9034 NR_073365 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 844-30 chr19 36874549 36874840 + 4 NA intron (NM_001242476, intron 3 of 3) AluSp|SINE|Alu 23043 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 614-31 chr14 48043480 48043657 + 4 NA Intergenic Intergenic -248554 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 564-135 chr3 188504541 188504788 + 4 NA intron (NM_001167672, intron 3 of 9) L1M4c|LINE|L1 64002 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 592-54 chr15 60701457 60701746 + 4 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 20032 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 725 chr1 60711056 60711261 + 4 NA intron (NR_110628, intron 4 of 5) L1MA3|LINE|L1 -88473 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 616-3 chr1 78574431 78574672 + 4 NA Intergenic L1ME2z|LINE|L1 -45897 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 1007-17 chr8 21402024 21402374 + 4 NA Intergenic Intergenic 103960 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 870-22 chr3 19647541 19647973 + 4 NA Intergenic Intergenic 286460 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 740-60 chr4 72863513 72863873 + 4 NA Intergenic Intergenic 206023 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 516-71 chr14 72276888 72277035 + 4 NA intron (NM_001370288, intron 2 of 16) L2a|LINE|L2 -239859 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 718-77 chr5 165662082 165662384 + 4 NA Intergenic L2a|LINE|L2 1191954 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 679-24 chr12 44406986 44407211 + 4 NA Intergenic LTR82A|LTR|ERVL 468563 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 790-52 chr8 46316421 46316772 + 4 NA Intergenic ALR/Alpha|Satellite|centr 301047 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 811-35 chr4 53260058 53260341 + 4 NA intron (NM_152540, intron 4 of 8) L1PB1|LINE|L1 105862 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 843-7 chr11 38404161 38404549 + 4 NA Intergenic L1MA10|LINE|L1 242001 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 1343-7 chr7 50246899 50247644 + 4 NA Intergenic L1MB3|LINE|L1 -56793 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 665-32 chr14 66740438 66740688 + 4 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 233156 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 743-46 chr2 220362925 220363296 + 4 NA Intergenic L1ME3C|LINE|L1 -456545 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 581-88 chr2 211376211 211376505 + 4 NA 3' UTR (NM_005235, exon 28 of 28) 3' UTR (NM_005235, exon 28 of 28) 758787 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 864-40 chr6 107693304 107693662 + 4 NA Intergenic Intergenic 38667 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 996-8 chr12 37793232 37793711 + 4 NA Intergenic ALR/Alpha|Satellite|centr -523303 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1477-4 chr2 49833156 49833908 + 4 NA Intergenic Intergenic 140671 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 506-136 chr2 52029422 52029577 + 4 NA intron (NR_135237, intron 7 of 10) L1ME4a|LINE|L1 -341149 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 286-117 chr14 46558568 46558692 + 4 NA Intergenic L2a|LINE|L2 87271 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 426-48 chr11 63229704 63229923 + 4 NA promoter-TSS (NM_199352) promoter-TSS (NM_199352) -161 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 1048-12 chr19 11977478 11977990 + 4 NA intron (NM_001012753, intron 3 of 3) AluJr|SINE|Alu -9883 NR_134928 101928464 Hs.631643 NR_134927 ENSG00000219665 ZNF433-AS1 - ZNF433 and ZNF878 antisense RNA 1 ncRNA 750-63 chr6 56307982 56308315 + 4 NA intron (NM_001318752, intron 1 of 28) MLT1A1|LTR|ERVL-MaLR -60568 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 673-49 chr19 56613602 56613845 + 4 NA intron (NR_163263, intron 2 of 4) intron (NR_163263, intron 2 of 4) 18421 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 829-26 chr3 117492268 117492757 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR 198413 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 726 chr1 66047668 66047875 + 4 NA intron (NR_123718, intron 1 of 2) intron (NR_123718, intron 1 of 2) 2947 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 764-55 chr4 172894274 172894527 + 4 NA intron (NM_001034845, intron 8 of 12) L1MA4|LINE|L1 -167522 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 714-69 chr8 40657829 40658158 + 4 NA intron (NM_001135731, intron 4 of 5) L1MEf|LINE|L1 239833 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 586-12 chr1 191590331 191590617 + 4 NA Intergenic Intergenic -361976 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 722-16 chr10 94028390 94028640 + 4 NA intron (NM_001288989, intron 1 of 32) MLT1F1|LTR|ERVL-MaLR 34584 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 886 chr1 80579914 80580209 + 4 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 44306 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 976-4 chr10 43517031 43517483 + 4 NA Intergenic LTR53-int|LTR|ERVL 51202 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 498-234 chr6 99798684 99798924 + 4 NA Intergenic MARNA|DNA|TcMar-Mariner 192030 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 504-78 chr15 59842599 59842793 + 4 NA Intergenic Intergenic -153376 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 476-126 chr19 29041714 29041890 + 4 NA Intergenic LTR33A_|LTR|ERVL 39247 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 666-81 chr3 102602432 102602671 + 4 NA Intergenic Intergenic 167536 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 1711-4 chr9 96759674 96760427 + 4 NA exon (NM_014930, exon 6 of 6) exon (NM_014930, exon 6 of 6) 18037 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 630-77 chr21 30610459 30610706 + 4 NA Intergenic Intergenic 3322 NM_181602 337966 Hs.194301 NM_181602 ENSG00000184724 KRTAP6-1 C21orf103|KAP6.1 keratin associated protein 6-1 protein-coding 540-66 chr14 48450397 48450634 + 4 NA Intergenic MIR|SINE|MIR -655501 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 324-478 chr6 163594957 163595124 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR 76444 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 1087-8 chr2 188758724 188759175 + 4 NA intron (NR_161166, intron 1 of 1) L1MCc|LINE|L1 31174 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 891-9 chr12 133164082 133164653 + 4 NA Intergenic AluY|SINE|Alu -17128 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 752-33 chr18 64523953 64524179 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -264011 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 789-22 chr18 11470267 11470608 + 4 NA Intergenic Intergenic 15959 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 740-45 chr2 189918164 189918518 + 4 NA Intergenic L1MDa|LINE|L1 133891 NR_110332 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 1251-4 chr14 26471400 26471888 + 4 NA intron (NM_006491, intron 4 of 4) intron (NM_006491, intron 4 of 4) 81786 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 865-6 chr10 64360945 64361340 + 4 NA Intergenic Intergenic -464386 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 593-120 chr6 37609514 37609684 + 4 NA Intergenic MIRb|SINE|MIR -54177 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 666-56 chr2 114505610 114505853 + 4 NA intron (NM_001321908, intron 2 of 25) MIR|SINE|MIR 44154 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1069-6 chr17 59289099 59289430 + 4 NA Intergenic AluSx|SINE|Alu -42391 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 902-18 chr19 35623515 35623888 + 4 NA 3' UTR (NM_015302, exon 19 of 19) 3' UTR (NM_015302, exon 19 of 19) -5315 NM_001319113 79171 Hs.5086 NM_024321 ENSG00000126254 RBM42 - RNA binding motif protein 42 protein-coding 435-254 chr8 127098089 127098351 + 4 NA Intergenic Intergenic -15999 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 1026-15 chr21 28801864 28802331 + 4 NA Intergenic L1ME4b|LINE|L1 83270 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 858-16 chr14 101383453 101383935 + 4 NA Intergenic L1MEc|LINE|L1 24228 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 1207-2 chr10 13178095 13178552 + 4 NA intron (NM_018518, intron 6 of 19) AluSx|SINE|Alu 16765 NM_018518 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 744-66 chr7 42725515 42725923 + 4 NA Intergenic Intergenic -19272 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 756-32 chr20 31251517 31251842 + 4 NA Intergenic MER83|LTR|ERV1 -5985 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 568-33 chr12 14097237 14097511 + 4 NA Intergenic Intergenic -117018 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 480-214 chr4 63568360 63568489 + 4 NA Intergenic HERVL-int|LTR|ERVL 841026 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 815-37 chr6 156561491 156561872 + 4 NA Intergenic Intergenic 182931 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 545-163 chr4 87672566 87672781 + 4 NA Intergenic L1PA17|LINE|L1 22393 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 639-108 chr7 54212526 54212804 + 4 NA Intergenic L1M1|LINE|L1 -118032 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 567-87 chr2 107292773 107293005 + 4 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 56636 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 618-29 chr12 112750284 112750500 + 4 NA intron (NM_001347952, intron 1 of 21) LTR16C|LTR|ERVL -41146 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 233-121 chr16 74558774 74558884 + 4 NA intron (NR_027264, intron 1 of 26) intron (NR_027264, intron 1 of 26) 48285 NM_001145666 2734 Hs.109731 NM_012201 ENSG00000090863 GLG1 CFR-1|ESL-1|MG-160|MG160 golgi glycoprotein 1 protein-coding 402-151 chr2 72694610 72694809 + 4 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 131324 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 559-152 chr5 162719482 162719662 + 4 NA Intergenic Intergenic 651930 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 641-92 chr5 2355486 2355809 + 4 NA Intergenic Intergenic -43446 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 634-70 chr2 27997384 27997586 + 4 NA intron (NM_199193, intron 5 of 13) intron (NM_199193, intron 5 of 13) 1118 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 918-16 chr20 34903195 34903679 + 4 NA intron (NM_001076552, intron 2 of 18) L2a|LINE|L2 26825 NM_018677 55902 Hs.517034 NM_018677 ENSG00000131069 ACSS2 ACAS2|ACECS|ACS|ACSA|dJ1161H23.1 acyl-CoA synthetase short chain family member 2 protein-coding 804-5 chr1 215183351 215183688 + 4 NA intron (NM_001017424, intron 5 of 6) intron (NM_001017424, intron 5 of 6) 100782 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 634-141 chr7 26266287 26266605 + 4 NA Intergenic Intergenic -25432 NM_001362753 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 318-20 chr1 94489966 94490065 + 4 NA intron (NM_002858, intron 15 of 22) intron (NM_002858, intron 15 of 22) 51744 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 1243-7 chr3 127178225 127178829 + 4 NA Intergenic MLT2B2|LTR|ERVL -14604 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 766-60 chr6 121362237 121362549 + 4 NA Intergenic Intergenic -27664 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 642-71 chr3 55341107 55341318 + 4 NA Intergenic Intergenic 140186 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 796-42 chr5 7543162 7543390 + 4 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 147138 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 280-301 chr4 129950307 129950507 + 4 NA intron (NR_151713, intron 14 of 16) intron (NR_151713, intron 14 of 16) 178788 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 650-50 chr2 24893353 24893593 + 4 NA intron (NM_001320613, intron 2 of 21) AluJr|SINE|Alu 26764 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 1209 chr10 7447617 7448246 + 4 NA Intergenic L1M4a1|LINE|L1 -36445 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 1554-4 chr2 11888250 11889023 + 4 NA Intergenic Intergenic -51650 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 732-23 chr12 38984686 38984970 + 4 NA Intergenic Intergenic -79237 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 607-146 chr8 121347272 121347543 + 4 NA Intergenic Intergenic -291939 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 798-49 chr5 51145405 51145810 + 4 NA Intergenic Intergenic -175420 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 694-22 chr11 41574204 41574488 + 4 NA Intergenic Intergenic -114694 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 997-21 chr4 26098824 26099256 + 4 NA Intergenic Intergenic 184848 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 1073-2 chr1 247135008 247135424 + 4 NA intron (NM_001243740, intron 3 of 3) L1PA8A|LINE|L1 -22799 NM_207401 388759 Hs.456511 NM_207401 C1orf229 - chromosome 1 open reading frame 229 protein-coding 871-20 chr3 17857675 17857981 + 4 NA Intergenic L1MA3|LINE|L1 -104724 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 1172-4 chr20 31072562 31073122 + 4 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -184822 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 808-44 chr5 55303919 55304270 + 4 NA intron (NR_144323, intron 1 of 26) intron (NR_144323, intron 1 of 26) 3600 NR_144324 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 994-13 chr5 153239216 153239598 + 4 NA Intergenic Intergenic -251117 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 1602-5 chr20 46454108 46454880 + 4 NA Intergenic Intergenic 3149 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 570-76 chr16 35868155 35868428 + 4 NA Intergenic L1PA11|LINE|L1 121739 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 544-69 chr14 82057743 82057968 + 4 NA Intergenic ERVL-int|LTR|ERVL -314717 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 639-64 chr2 123617718 123618028 + 4 NA Intergenic L1MA2|LINE|L1 407301 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 558-121 chr21 21888726 21888912 + 4 NA Intergenic Intergenic 141834 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 573-117 chr3 89060454 89060612 + 4 NA Intergenic Intergenic -47088 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 774-64 chr4 79130547 79130876 + 4 NA intron (NR_038342, intron 3 of 5) L1M3|LINE|L1 158963 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 975-19 chr7 46077708 46078079 + 4 NA Intergenic L1MEc|LINE|L1 -156621 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 796-58 chr8 121377014 121377550 + 4 NA Intergenic L1MC5a|LINE|L1 -262064 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 517-211 chr5 38380547 38380745 + 4 NA intron (NM_152403, intron 6 of 21) intron (NM_152403, intron 6 of 21) 22825 NR_102749 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 590-110 chr3 126425894 126426090 + 4 NA intron (NM_182628, intron 13 of 16) L1MC1|LINE|L1 31083 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 763-11 chr11 91910537 91910951 + 4 NA Intergenic Intergenic -314290 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 654-93 chr5 8972538 8972744 + 4 NA Intergenic L1MA4A|LINE|L1 81254 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 540-194 chr7 33289230 33289454 + 4 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 159778 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 828-11 chr11 38354272 38354632 + 4 NA Intergenic L1M2|LINE|L1 291904 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 1063-11 chr14 53984235 53984812 + 4 NA Intergenic Intergenic -27632 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 679-25 chr12 53771533 53771772 + 4 NA Intergenic L3|LINE|CR1 -14618 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 979-10 chr18 69914070 69914363 + 4 NA intron (NM_001303619, intron 1 of 4) intron (NM_001303619, intron 1 of 4) 33657 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 779-50 chr7 53475180 53475475 + 4 NA Intergenic Intergenic 336604 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 441-206 chr5 114713259 114713461 + 4 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 60053 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 726-11 chr11 79357912 79358232 + 4 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 44037 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 828-27 chr2 127782862 127783345 + 4 NA intron (NM_001006622, intron 1 of 5) MER2|DNA|TcMar-Tigger 28068 NM_001006623 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 761-34 chr20 58532208 58532597 + 4 NA intron (NR_034147, intron 5 of 6) intron (NR_034147, intron 5 of 6) -17003 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 548-47 chr12 13856378 13856681 + 4 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 123827 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 840-53 chr9 93748125 93748491 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR -71049 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 766-17 chr12 90178513 90178765 + 4 NA Intergenic Intergenic -114679 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 438-130 chr2 115806136 115806328 + 4 NA intron (NM_001321912, intron 20 of 25) intron (NM_001321912, intron 20 of 25) 462417 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1304-8 chr8 129715875 129716473 + 4 NA Intergenic L1MEc|LINE|L1 -35935 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 979-16 chr5 15240361 15240872 + 4 NA intron (NR_109944, intron 2 of 2) MSTA-int|LTR|ERVL-MaLR 25944 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 840-4 chr10 13024213 13024674 + 4 NA intron (NM_001282658, intron 5 of 6) MLT1H2-int|LTR|ERVL-MaLR -22730 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 374-337 chr6 45222746 45222879 + 4 NA intron (NM_001350325, intron 2 of 10) L1MD2|LINE|L1 -25042 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 430-3 chr1 40616998 40617174 + 4 NA Intergenic L1MEc|LINE|L1 48596 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 545-17 chr10 28272720 28272872 + 4 NA intron (NM_173496, intron 2 of 18) intron (NM_173496, intron 2 of 18) 9327 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 469-12 chr1 112087178 112087518 + 4 NA Intergenic Intergenic 96812 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 673-79 chr3 95223002 95223288 + 4 NA Intergenic L1PA10|LINE|L1 284882 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 1118-9 chr2 4427866 4428563 + 4 NA Intergenic Intergenic 228008 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 895-5 chr10 76600984 76601421 + 4 NA Intergenic L1MEg|LINE|L1 -286842 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 670-64 chr2 105667246 105667557 + 4 NA Intergenic Intergenic -56842 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 827-36 chr4 8712376 8712859 + 4 NA Intergenic Intergenic 119852 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 1013-4 chr17 68607226 68607577 + 4 NA Intergenic MamSINE1|SINE|tRNA-RTE -6034 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 654-71 chr2 185958250 185958504 + 4 NA Intergenic Intergenic 127940 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 678-16 chr11 101166053 101166231 + 4 NA Intergenic L1MA4|LINE|L1 -36329 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 608-100 chr3 99407716 99407979 + 4 NA Intergenic Intergenic -230747 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 928-15 chr2 75851765 75852163 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie -141049 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 923-24 chr7 48951230 48951841 + 4 NA Intergenic MER65A|LTR|ERV1 26988 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 737-87 chr8 139538727 139539038 + 4 NA Intergenic Intergenic 164241 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 386-17 chr1 195216750 195216928 + 4 NA Intergenic L1P4a|LINE|L1 871876 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 433-155 chr20 45191081 45191257 + 4 NA Intergenic Intergenic -15864 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 533-137 chr3 103067057 103067306 + 4 NA Intergenic L2b|LINE|L2 456935 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 929-2 chr10 37894272 37894740 + 4 NA Intergenic Intergenic -36403 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 784-48 chr5 2974465 2974876 + 4 NA Intergenic Intergenic 56816 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 362-297 chr4 38372650 38372813 + 4 NA intron (NR_149123, intron 1 of 1) MLT1C|LTR|ERVL-MaLR 5817 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 639-90 chr4 93606745 93606989 + 4 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -221886 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 682-72 chr4 45001986 45002310 + 4 NA Intergenic L1M5|LINE|L1 -275514 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 515-112 chr2 57438296 57438453 + 4 NA Intergenic Intergenic -469277 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 847-32 chr3 106756394 106756820 + 4 NA Intergenic L1MA3|LINE|L1 484031 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 659-16 chr11 43027064 43027380 + 4 NA Intergenic Intergenic 242147 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 554-79 chr14 78511934 78512083 + 4 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 108289 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 538-108 chr2 48781451 48781630 + 4 NA Intergenic Intergenic -25816 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 700-39 chr18 7990688 7991117 + 4 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 376132 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 700-40 chr18 38846383 38846591 + 4 NA Intergenic Intergenic 775688 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 736-58 chr3 172238813 172239008 + 4 NA intron (NM_001135095, intron 4 of 25) intron (NM_001135095, intron 4 of 25) 198379 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 856-19 chr19 29437921 29438345 + 4 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 87619 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 625-4 chr1 88629995 88630217 + 4 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -54038 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 878-19 chr16 9967063 9967385 + 4 NA intron (NM_001134408, intron 2 of 13) L1PB2|LINE|L1 214843 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 643-82 chr4 32647148 32647398 + 4 NA Intergenic L1MC5a|LINE|L1 296235 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 669-94 chr5 162660544 162660827 + 4 NA Intergenic L1MA8|LINE|L1 593043 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 1477 chr12 95731133 95731607 + 4 NA intron (NM_001329701, intron 3 of 9) AluSx1|SINE|Alu 58825 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 953-21 chr5 7437340 7437652 + 4 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 41358 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 1257-3 chr20 51252086 51252701 + 4 NA Intergenic Intergenic 200584 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 1024-24 chr8 135012810 135013189 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR 163064 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 630-72 chr20 9849988 9850149 + 4 NA Intergenic MLT1A|LTR|ERVL-MaLR -10992 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 744-57 chr5 123630017 123630330 + 4 NA Intergenic L1PA13|LINE|L1 84756 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 550-163 chr4 71889100 71889280 + 4 NA Intergenic Intergenic -83670 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 673-33 chr15 27118519 27118785 + 4 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 42667 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 802-74 chr9 102044383 102044824 + 4 NA Intergenic L1MA5|LINE|L1 -306023 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 608-43 chr14 84675032 84675294 + 4 NA Intergenic Intergenic -596769 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 679-98 chr7 7950546 7950925 + 4 NA intron (NR_110018, intron 3 of 4) intron (NR_110018, intron 3 of 4) 18017 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 581-175 chr8 112906149 112906411 + 4 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 262787 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 832-13 chr2 99127775 99128181 + 4 NA intron (NM_001349013, intron 1 of 16) L1ME4b|LINE|L1 13202 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 744-24 chr15 69551042 69551415 + 4 NA Intergenic LTR8|LTR|ERV1 -10492 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 1042-17 chrX 55237378 55237877 + 4 NA Intergenic L1PB2|LINE|L1 17281 NM_001013435 90737 Hs.668491 NM_130467 ENSG00000158639 PAGE5 CT16|CT16.1|CT16.2|GAGEE1|PAGE-5 PAGE family member 5 protein-coding 634-116 chr4 96633387 96633627 + 4 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 322804 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 708-25 chr14 61659188 61659371 + 4 NA Intergenic AluSz6|SINE|Alu -36234 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 610-92 chr2 182473420 182473601 + 4 NA intron (NM_005019, intron 1 of 14) L1PA13|LINE|L1 -46462 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 1157-7 chr2 117236400 117236933 + 4 NA Intergenic L1PA16|LINE|L1 -578025 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 1060-10 chr19 27592366 27592709 + 4 NA Intergenic ALR/Alpha|Satellite|centr -200894 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 948-30 chr5 148887568 148888030 + 4 NA Intergenic L1ME3A|LINE|L1 61206 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 845-6 chr12 25298059 25298480 + 4 NA Intergenic L1MC4|LINE|L1 -47340 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 650-138 chrX 83146737 83147046 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR -361399 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 738-68 chr8 83624156 83624505 + 4 NA Intergenic L1PREC2|LINE|L1 220572 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 573-13 chr1 194158687 194158871 + 4 NA Intergenic L1PA7|LINE|L1 854034 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 649-47 chr2 51171015 51171384 + 4 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 138598 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 807-47 chr8 76833885 76834317 + 4 NA intron (NM_024721, intron 5 of 10) L1MC1|LINE|L1 132749 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 1256-11 chr7 34812632 34813123 + 4 NA intron (NM_207172, intron 4 of 8) intron (NM_207172, intron 4 of 8) 21454 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 928-32 chr8 123452160 123452431 + 4 NA Intergenic Intergenic 35521 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 837-13 chr19 43961768 43962094 + 4 NA intron (NM_013359, intron 2 of 5) L1MC4|LINE|L1 10686 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 611-145 chr8 23658199 23658397 + 4 NA Intergenic L1MB8|LINE|L1 24591 NM_001256339 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 736-14 chr11 40428020 40428427 + 4 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -135093 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1434-6 chr4 129062189 129062764 + 4 NA intron (NM_001300898, intron 2 of 5) intron (NM_001300898, intron 2 of 5) 31063 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 484-168 chr3 36693452 36693670 + 4 NA Intergenic LTR60|LTR|ERV1 46300 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 390-26 chr1 240253655 240253843 + 4 NA intron (NM_020066, intron 6 of 17) L1MA4A|LINE|L1 161866 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 307-349 chr4 105837611 105837728 + 4 NA intron (NM_001370181, intron 9 of 11) intron (NM_001370181, intron 9 of 11) -10497 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 804-58 chr5 172546473 172546874 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR 12341 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 581-162 chr7 153356122 153356291 + 4 NA Intergenic L1MCa|LINE|L1 56028 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 883-9 chr15 27145392 27145744 + 4 NA intron (NM_001270873, intron 3 of 5) L1M4|LINE|L1 15751 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 953-3 chr11 50485293 50485937 + 4 NA Intergenic ALR/Alpha|Satellite|centr 76468 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1004-9 chr17 61634548 61635070 + 4 NA Intergenic L1MA4|LINE|L1 -43590 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 488-103 chr17 12806906 12807158 + 4 NA intron (NM_001321164, intron 1 of 20) MER57E1|LTR|ERV1 -16748 NR_104607 100128006 Hs.567641 NR_104607 ENSG00000265489 LOC100128006 - uncharacterized LOC100128006 ncRNA 1017-5 chr11 60672022 60672510 + 4 NA intron (NR_026946, intron 6 of 6) L1M4b|LINE|L1 -27346 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 740-65 chr5 163124152 163124374 + 4 NA Intergenic Intergenic -313308 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 897-13 chr14 56970035 56970469 + 4 NA Intergenic L2a|LINE|L2 157094 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 1047-6 chr12 130528574 130528979 + 4 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 99680 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 897-5 chr10 16340396 16340978 + 4 NA Intergenic Intergenic -96256 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 412-294 chr6 160559670 160559871 + 4 NA intron (NM_005577, intron 28 of 38) L1PB|LINE|L1 -48646 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 715-72 chr5 131842326 131842611 + 4 NA intron (NM_001303622, intron 11 of 12) L1M1|LINE|L1 -45451 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 827-55 chr8 117261775 117262124 + 4 NA Intergenic Intergenic 126954 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 775-86 chr8 137945809 137946069 + 4 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 137606 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 1095 chr10 55905699 55906073 + 4 NA Intergenic Intergenic -277944 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 961-17 chr6 15419290 15419627 + 4 NA intron (NM_004973, intron 3 of 17) L1MEc|LINE|L1 170603 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 730-70 chr7 4671733 4672080 + 4 NA Intergenic Intergenic -10389 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 429-61 chr11 114984677 114984846 + 4 NA Intergenic Intergenic 306234 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 1049-10 chr2 75975647 75976047 + 4 NA Intergenic Intergenic -264932 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 670-134 chr9 31096410 31096645 + 4 NA Intergenic Intergenic 284963 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 1006 chr1 205897586 205898095 + 4 NA Intergenic L1MA5A|LINE|L1 7820 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 841-43 chr8 140133647 140133938 + 4 NA intron (NM_001160372, intron 17 of 22) L1MB4|LINE|L1 -33257 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 632-81 chr4 33360558 33360759 + 4 NA Intergenic Intergenic 679235 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 857-12 chr10 108189639 108190011 + 4 NA Intergenic L1MA4|LINE|L1 -120532 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 322-564 chr9 74855922 74856076 + 4 NA intron (NM_017662, intron 2 of 38) MIRc|SINE|MIR 31348 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 640-79 chr3 44498932 44499182 + 4 NA 3' UTR (NM_001287349, exon 5 of 5) 3' UTR (NM_001287349, exon 5 of 5) 11560 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 846-55 chr8 13646531 13646974 + 4 NA Intergenic L1ME1|LINE|L1 17062 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 666-55 chr2 83819689 83819965 + 4 NA Intergenic L1PA13|LINE|L1 297013 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 1235-8 chr9 642751 643239 + 4 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) -43772 NM_001354336 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 1453-7 chr8 143848735 143849227 + 4 NA Intergenic Intergenic -8008 NM_178564 340371 Hs.521926 NM_178564 ENSG00000185189 NRBP2 TRG16|pp9320 nuclear receptor binding protein 2 protein-coding 443-80 chr13 55413951 55414118 + 4 NA Intergenic Intergenic 239580 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 580-105 chr21 17887588 17887876 + 4 NA Intergenic Intergenic -2124 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 1014-21 chr5 33386066 33386483 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -54422 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 747-22 chr14 78347595 78347861 + 4 NA intron (NR_073547, intron 4 of 20) MIRc|SINE|MIR -55991 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 614-112 chr6 131002293 131002484 + 4 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) -1621 NM_001252660 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 666-2 chr1 88917209 88917528 + 4 NA Intergenic L1MD3|LINE|L1 -25801 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 366-64 chr10 109124898 109125018 + 4 NA Intergenic Intergenic 798288 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 664-7 chr1 79213737 79214014 + 4 NA Intergenic Intergenic -207145 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 643-17 chr11 93994182 93994417 + 4 NA Intergenic LOR1-int|LTR|ERV1 -27055 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 575-123 chr3 107883513 107883682 + 4 NA intron (NR_015394, intron 1 of 2) intron (NR_015394, intron 1 of 2) 392 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 654-94 chr5 32961431 32961600 + 4 NA non-coding (NR_033832, exon 6 of 6) non-coding (NR_033832, exon 6 of 6) 14072 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 1377 chr11 121401586 121402361 + 4 NA Intergenic L1MB8|LINE|L1 -50341 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 816-17 chr17 65512277 65512629 + 4 NA Intergenic L1ME2|LINE|L1 49195 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 658-117 chr8 27413270 27413543 + 4 NA intron (NM_173175, intron 2 of 29) L1MC4|LINE|L1 -19964 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 618-41 chr16 73607374 73607669 + 4 NA Intergenic MIRc|SINE|MIR 220716 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 734-44 chr22 19671240 19671521 + 4 NA Intergenic Intergenic -43123 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 558-112 chr20 7199496 7199712 + 4 NA intron (NR_110609, intron 3 of 7) intron (NR_110609, intron 3 of 7) 54598 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 433-294 chr9 25250268 25250394 + 4 NA Intergenic L1M4c|LINE|L1 428527 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 974-10 chr20 14536116 14536517 + 4 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) -18068 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 599-105 chr5 13414681 13414973 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -381941 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 607-101 chr3 162779213 162779641 + 4 NA Intergenic Intergenic 523874 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 1309 chr8 144970964 144971721 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -20462 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 326-128 chr12 65196281 65196492 + 4 NA intron (NM_001167614, intron 1 of 12) intron (NM_001167614, intron 1 of 12) 26803 NM_001167614 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 796-16 chr14 70543016 70543318 + 4 NA Intergenic LTR19-int|LTR|ERV1 -8163 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 548-237 chr8 119240478 119240667 + 4 NA intron (NM_052886, intron 3 of 3) MIR|SINE|MIR 6285 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 764-4 chr1 166515326 166515562 + 4 NA Intergenic Intergenic -25405 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 649-114 chr8 131406606 131406921 + 4 NA Intergenic Intergenic -365854 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 646-60 chr2 104014905 104015172 + 4 NA Intergenic L1ME3A|LINE|L1 393294 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 1004-8 chr17 58831818 58832471 + 4 NA intron (NM_014906, intron 1 of 6) L3|LINE|CR1 76275 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 698-64 chr4 32289756 32290083 + 4 NA Intergenic Intergenic -61119 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 896-43 chrX 63317803 63318088 + 4 NA Intergenic ERVL-B4-int|LTR|ERVL 33387 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 418-163 chr3 96158397 96158536 + 4 NA Intergenic L1PA12|LINE|L1 -201498 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 382-448 chrX 73742224 73742366 + 4 NA Intergenic L1MA9|LINE|L1 -49910 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 504-260 chr8 91778651 91778862 + 4 NA Intergenic L1MC4|LINE|L1 238924 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 613-121 chr6 165670363 165670644 + 4 NA Intergenic Intergenic -8223 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 567-59 chr15 53101377 53101646 + 4 NA Intergenic L3|LINE|CR1 -14854 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 375-418 chr8 123783526 123783723 + 4 NA intron (NM_144963, intron 8 of 23) intron (NM_144963, intron 8 of 23) 15185 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 2659 chr8 139723301 139724709 + 4 NA Intergenic L1ME3D|LINE|L1 -20882 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1355-8 chr7 88958109 88958693 + 4 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -162664 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 1026-25 chr8 46318042 46318451 + 4 NA Intergenic ALR/Alpha|Satellite|centr 299397 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 884-21 chr2 107208466 107208883 + 4 NA intron (NR_049853, intron 2 of 3) L1PA4|LINE|L1 140851 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 687-28 chr11 113919092 113919490 + 4 NA intron (NM_006028, intron 2 of 8) L1MEf|LINE|L1 10450 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 750-14 chr12 89923815 89924113 + 4 NA Intergenic Intergenic -23729 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 590-101 chr3 28035892 28036235 + 4 NA Intergenic Intergenic -201927 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 1182-12 chr3 100972593 100972993 + 4 NA intron (NM_001349332, intron 1 of 35) Tigger17a|DNA|TcMar-Tigger 20697 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 658-85 chr3 187267447 187267653 + 4 NA intron (NR_033519, intron 1 of 9) LTR33C|LTR|ERVL -23722 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 1070-4 chr10 120266420 120266903 + 4 NA Intergenic L1ME1|LINE|L1 88562 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 1097-4 chr11 135062654 135063116 + 4 NA Intergenic L1M5|LINE|L1 77533 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 638-124 chr5 89069292 89069599 + 4 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -165340 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 474-284 chr8 68811764 68811981 + 4 NA intron (NR_146187, intron 12 of 13) MIR|SINE|MIR 292318 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 582-95 chr22 34982828 34983015 + 4 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 14995 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1167-13 chr20 11973494 11974177 + 4 NA Intergenic Intergenic 55942 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 849-34 chr5 5996081 5996462 + 4 NA Intergenic L1PA15|LINE|L1 341021 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 656-40 chr14 43859595 43859928 + 4 NA Intergenic Intergenic 647522 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 531-24 chr10 57386422 57386604 + 4 NA Intergenic Intergenic -81954 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 437-13 chr1 209291650 209291812 + 4 NA Intergenic Intergenic -33725 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 566-28 chr12 26770969 26771244 + 4 NA intron (NM_002223, intron 2 of 56) MLT1C|LTR|ERVL-MaLR 62088 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 583-33 chr11 83701501 83701718 + 4 NA intron (NM_001142699, intron 18 of 27) L2a|LINE|L2 -19184 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 709-19 chr12 88213577 88213769 + 4 NA Intergenic L1M2|LINE|L1 71366 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 1005-16 chr4 83819362 83819887 + 4 NA Intergenic L1M1|LINE|L1 283516 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 521-91 chr15 69655922 69656157 + 4 NA intron (NR_126437, intron 3 of 5) AluSz|SINE|Alu 63839 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 710-46 chr2 137561963 137562372 + 4 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 365765 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 1148-9 chr5 45087538 45088096 + 4 NA Intergenic Intergenic 278870 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 902-27 chr3 75745000 75745462 + 4 NA intron (NM_001324028, intron 2 of 5) intron (NM_001324028, intron 2 of 5) 6951 NR_036235 100422955 NR_036235 ENSG00000266396 MIR4273 - microRNA 4273 ncRNA 1595 chr10 83753240 83753918 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR -76490 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1203-14 chr9 519925 520585 + 4 NA intron (NM_001354331, intron 1 of 10) AluJb|SINE|Alu 15700 NM_001354333 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 715-54 chr3 112866505 112866817 + 4 NA Intergenic L1MA3|LINE|L1 -20711 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 698-8 chr1 194066318 194066547 + 4 NA Intergenic L1MEd|LINE|L1 761687 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 1307-6 chr2 136595001 136595500 + 4 NA Intergenic L1M4c|LINE|L1 -170295 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 972 chr1 24040734 24041044 + 4 NA Intergenic AluJr4|SINE|Alu -60426 NR_034035 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 625-132 chrX 93157642 93157862 + 4 NA Intergenic L1MA4A|LINE|L1 -332849 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 595-172 chr9 71203281 71203450 + 4 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -81744 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 870-29 chr5 42151413 42151707 + 4 NA Intergenic L1PA10|LINE|L1 23785 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 1437 chr17 40759337 40759901 + 4 NA Intergenic L1MA8|LINE|L1 -4288 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 688-109 chr8 137107991 137108249 + 4 NA Intergenic MIRb|SINE|MIR 305468 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 729-6 chr1 227674253 227674532 + 4 NA intron (NR_102302, intron 5 of 5) HAL1|LINE|L1 23315 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 1080-7 chr14 62829447 62830148 + 4 NA intron (NM_139318, intron 8 of 10) THE1D-int|LTR|ERVL-MaLR 215661 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 590-169 chr8 117736269 117736543 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 184507 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 662-104 chr9 31003553 31003833 + 4 NA Intergenic L1MD1|LINE|L1 377797 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 1836 chr8 129743985 129744697 + 4 NA Intergenic L1MEc|LINE|L1 42283 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 786-54 chr6 3880557 3880864 + 4 NA Intergenic Intergenic 31337 NM_012135 26240 Hs.140944 NM_012135 ENSG00000145945 FAM50B D6S2654E|X5L family with sequence similarity 50 member B protein-coding 1560 chr3 35181662 35182302 + 4 NA intron (NR_110817, intron 2 of 3) THE1C-int|LTR|ERVL-MaLR 212041 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 1340-3 chr19 24370135 24370786 + 4 NA Intergenic ALR/Alpha|Satellite|centr -207013 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1056-6 chr2 12816697 12817188 + 4 NA Intergenic Intergenic 79575 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 562-131 chr21 33208351 33208601 + 4 NA Intergenic L1MEh|LINE|L1 -21419 NM_001289125 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 480-279 chr7 81772374 81772547 + 4 NA Intergenic MER39B|LTR|ERV1 -2413 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 1059-13 chr8 109999405 109999912 + 4 NA Intergenic L1MB8|LINE|L1 -23887 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 245-2 chr1 73747878 73747982 + 4 NA Intergenic Intergenic 73251 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 652-80 chr3 84477718 84478003 + 4 NA Intergenic L1MA5|LINE|L1 391715 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 760-74 chr8 119999849 120000109 + 4 NA intron (NM_022783, intron 4 of 8) L1MD2|LINE|L1 -125123 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 380-184 chr2 98246818 98247004 + 4 NA intron (NM_001345864, intron 13 of 21) intron (NM_001345864, intron 13 of 21) 97378 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 534-245 chr8 3985058 3985320 + 4 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1009725 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 1603-4 chr8 79236198 79236778 + 4 NA Intergenic Intergenic -95700 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 589-110 chr4 80408008 80408265 + 4 NA intron (NM_152770, intron 2 of 5) L1ME3F|LINE|L1 72416 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 704-31 chr17 66857175 66857425 + 4 NA intron (NM_145811, intron 1 of 5) AluJr4|SINE|Alu 22183 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 680-64 chr2 129531381 129531601 + 4 NA Intergenic MLT2B1|LTR|ERVL -257600 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 1088-10 chr6 106779417 106779783 + 4 NA intron (NR_147986, intron 1 of 3) THE1B|LTR|ERVL-MaLR -4525 NR_030314 693172 NR_030314 ENSG00000207577 MIR587 MIRN587|hsa-mir-587 microRNA 587 ncRNA 1371-3 chr9 131540442 131541252 + 4 NA Intergenic L1MEd|LINE|L1 -4676 NM_001365666 642515 NM_001365666 ENSG00000283526 PRRT1B DSPD2|IFITMD8 proline rich transmembrane protein 1B protein-coding 712-41 chr2 41531306 41531521 + 4 NA Intergenic MSTC|LTR|ERVL-MaLR -346142 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 690-62 chr2 176793021 176793318 + 4 NA Intergenic Intergenic 155415 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 544-58 chr12 94526278 94526538 + 4 NA Intergenic L1ME4a|LINE|L1 -35381 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 615-114 chr5 132053657 132053887 + 4 NA Intergenic Intergenic -6883 NM_000588 3562 Hs.694 NM_000588 ENSG00000164399 IL3 IL-3|MCGF|MULTI-CSF interleukin 3 protein-coding 844-28 chr19 30335242 30335635 + 4 NA Intergenic Intergenic -36946 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 765-33 chr20 15541015 15541349 + 4 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 344342 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 991-18 chr5 33137331 33137767 + 4 NA Intergenic L1M3b|LINE|L1 -92186 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 573-2 chr1 60423693 60423852 + 4 NA Intergenic Intergenic 198913 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 514-42 chr10 118029263 118029565 + 4 NA intron (NM_014904, intron 3 of 4) intron (NM_014904, intron 3 of 4) -17407 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 509-237 chr7 110809801 110810047 + 4 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -281082 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 419-247 chr6 40510159 40510315 + 4 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 77127 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 837-20 chr2 126896040 126896507 + 4 NA Intergenic Intergenic -2617 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 770-5 chr10 61255410 61255651 + 4 NA Intergenic L1PA11|LINE|L1 -197109 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 615-28 chr12 100437105 100437290 + 4 NA Intergenic Intergenic -36669 NR_135146 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 679-13 chr10 43837083 43837373 + 4 NA Intergenic Intergenic -8078 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 694-23 chr11 88154845 88155176 + 4 NA intron (NM_022337, intron 1 of 2) L1PA16|LINE|L1 20433 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 722-34 chr15 57909580 57909987 + 4 NA Intergenic MIRb|SINE|MIR 104240 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 572-178 chr8 126512822 126512995 + 4 NA Intergenic AluSx1|SINE|Alu 45570 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 719-47 chr3 18224209 18224516 + 4 NA intron (NR_161333, intron 4 of 4) L2c|LINE|L2 200977 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 734-52 chr4 31350971 31351342 + 4 NA Intergenic Intergenic -155388 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 639-50 chr17 20029079 20029364 + 4 NA intron (NM_001243439, intron 1 of 14) L1MA5|LINE|L1 19862 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 709-3 chr1 221074268 221074508 + 4 NA Intergenic MER1B|DNA|hAT-Charlie -194248 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 541-141 chr20 42253322 42253585 + 4 NA intron (NM_007050, intron 13 of 30) intron (NM_007050, intron 13 of 30) -432030 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 716-67 chr5 68390961 68391302 + 4 NA Intergenic Intergenic 98554 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 673-42 chr17 68556229 68556519 + 4 NA intron (NM_017565, intron 1 of 10) intron (NM_017565, intron 1 of 10) 2053 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 614-6 chr1 196737565 196737883 + 4 NA intron (NM_000186, intron 17 of 21) intron (NM_000186, intron 17 of 21) -37076 NM_001166624 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 854-15 chr14 33032901 33033253 + 4 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 94198 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 625-32 chr14 61226226 61226536 + 4 NA Intergenic Intergenic 54957 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 518-205 chr4 73044548 73044759 + 4 NA Intergenic MER34|LTR|ERV1 25063 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 589-122 chr5 63484386 63484747 + 4 NA Intergenic Intergenic 477726 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 885-27 chr7 108932893 108933336 + 4 NA Intergenic Intergenic -48527 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 738-53 chr6 36747175 36747509 + 4 NA intron (NM_020939, intron 15 of 20) MIR|SINE|MIR 10058 NM_001314020 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 288-18 chr1 101470562 101470644 + 4 NA Intergenic L1MB2|LINE|L1 146766 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 1199-9 chr2 139693838 139694266 + 4 NA Intergenic Intergenic 796728 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 1983 chr2 99128802 99129741 + 4 NA intron (NM_001349013, intron 1 of 16) intron (NM_001349013, intron 1 of 16) 11909 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 452-64 chr13 31316842 31317001 + 4 NA intron (NM_194318, intron 12 of 14) intron (NM_194318, intron 12 of 14) 116946 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 584-56 chr18 4946384 4946725 + 4 NA Intergenic L1PREC2|LINE|L1 -134628 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 651-44 chr16 8418415 8418699 + 4 NA Intergenic L1ME3G|LINE|L1 171281 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1123-5 chr14 20585438 20585982 + 4 NA intron (NM_145250, intron 2 of 2) intron (NM_145250, intron 2 of 2) -2514 NR_122043 254028 Hs.652569 NR_122043 ENSG00000258573 LOC254028 - uncharacterized LOC254028 ncRNA 346-444 chr6 148783455 148783594 + 4 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 36494 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 798-10 chr12 22786300 22786674 + 4 NA Intergenic L2a|LINE|L2 161316 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 689-88 chr6 98615645 98615964 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR 215896 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 622-137 chr8 35686782 35686996 + 4 NA intron (NM_001322818, intron 7 of 16) intron (NM_001322818, intron 7 of 16) 23431 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 1328-5 chr8 122732701 122733504 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR -38996 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 825-34 chr3 176890634 176891003 + 4 NA Intergenic L1PB1|LINE|L1 -73817 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 915-17 chr3 73325260 73325724 + 4 NA Intergenic Intergenic 108503 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 706-81 chrX 46135820 46136021 + 4 NA Intergenic L1PB4|LINE|L1 191754 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 727-26 chr12 125351812 125352090 + 4 NA intron (NM_052907, intron 2 of 8) LTR50|LTR|ERVL 25335 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 698-70 chr5 41226930 41227234 + 4 NA intron (NM_001115131, intron 1 of 17) L1MA8|LINE|L1 -13550 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 719-91 chrX 58247399 58247600 + 4 NA Intergenic HSAT4|Satellite|centr -336866 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 708-48 chr3 76664310 76664541 + 4 NA Intergenic L2|LINE|L2 -375674 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 774-67 chr5 18404564 18405139 + 4 NA Intergenic Intergenic 597577 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 325-211 chr17 5972579 5972726 + 4 NA Intergenic Intergenic -97962 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 556-39 chr11 90911324 90911577 + 4 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -42248 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 944-18 chr3 194858437 194858775 + 4 NA Intergenic Intergenic -89897 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 612-60 chr2 34212112 34212402 + 4 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 145031 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 924-21 chr2 18767357 18767737 + 4 NA Intergenic L1MB7|LINE|L1 -177967 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 502-86 chr14 66679841 66680127 + 4 NA intron (NM_001024218, intron 1 of 21) L1MEg|LINE|L1 172577 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 550-157 chr3 192773402 192773600 + 4 NA Intergenic Intergenic -45960 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 692-109 chr9 69819354 69819576 + 4 NA TTS (NR_038833) TTS (NR_038833) 1274 NR_038833 494558 Hs.130722 NR_038833 ENSG00000225626 C9orf135-DT C9orf135-AS1 C9orf135 divergent transcript ncRNA 866-30 chr4 45240599 45240927 + 4 NA Intergenic L1MB8|LINE|L1 -514129 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 669-26 chr14 51420313 51420668 + 4 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -23355 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 890-36 chr8 52068275 52068811 + 4 NA Intergenic L1PB1|LINE|L1 -125819 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 694-107 chr5 162314170 162314383 + 4 NA Intergenic L1ME1|LINE|L1 246634 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 734-54 chr4 89076453 89076749 + 4 NA Intergenic Intergenic -19416 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 956-14 chr2 19133996 19134359 + 4 NA Intergenic L2b|LINE|L2 -107206 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 580-42 chr12 128017877 128018095 + 4 NA Intergenic L1ME2|LINE|L1 9180 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 731-68 chr7 54658746 54659022 + 4 NA Intergenic LTR40a|LTR|ERVL 100327 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 1052-16 chr2 128964031 128964702 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 99766 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 699-66 chr21 33367129 33367402 + 4 NA Intergenic LTR10B1|LTR|ERV1 -35631 NM_005534 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 636-123 chr6 38214738 38214951 + 4 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -266752 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 743-27 chr17 52936241 52936532 + 4 NA Intergenic AluSx4|SINE|Alu -49119 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 1091-4 chr16 7493113 7493576 + 4 NA intron (NM_145893, intron 1 of 13) MER3|DNA|hAT-Charlie 160499 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 761-52 chr5 120677 120889 + 4 NA intron (NM_052909, intron 2 of 19) L1MB3|LINE|L1 28615 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 487-137 chr2 49356761 49356975 + 4 NA Intergenic Intergenic -202341 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 630-105 chr5 58659075 58659265 + 4 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 76095 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 764-44 chr21 22834683 22835037 + 4 NA Intergenic L1MA3|LINE|L1 -244424 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 933-40 chr7 68419864 68420211 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 399784 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 808-19 chr15 68531600 68531928 + 4 NA intron (NM_001324014, intron 1 of 12) L1ME1|LINE|L1 13391 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 823-21 chr3 41472663 41472999 + 4 NA intron (NR_136342, intron 30 of 34) L1MA7|LINE|L1 273326 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 409-91 chr15 54801735 54801960 + 4 NA Intergenic Intergenic -254900 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 576-115 chr4 42884933 42885166 + 4 NA Intergenic L1MA4A|LINE|L1 -8217 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 617-48 chr16 79857659 79857914 + 4 NA Intergenic L1M5|LINE|L1 62537 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 497-218 chr5 17671565 17671859 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -16074 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 1224-9 chr7 4412635 4413120 + 4 NA Intergenic MER87B|LTR|ERV1 -269418 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 864-16 chr15 101440897 101441117 + 4 NA intron (NM_138325, intron 2 of 13) intron (NM_138325, intron 2 of 13) 48700 NM_002570 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 641-78 chr3 118074522 118074760 + 4 NA Intergenic L1MA3|LINE|L1 -383716 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 925-6 chr11 22980020 22980471 + 4 NA Intergenic LTR26|LTR|ERV1 -119771 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 349-61 chr10 59494674 59494845 + 4 NA Intergenic L1MA5|LINE|L1 -131578 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 459-96 chr15 100208691 100208920 + 4 NA intron (NM_139057, intron 7 of 21) intron (NM_139057, intron 7 of 21) 133170 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 738-62 chr7 6701117 6701488 + 4 NA intron (NM_006956, intron 2 of 5) intron (NM_006956, intron 2 of 5) 5645 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 668-10 chr10 113973908 113974230 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -69797 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 903-38 chr8 77373394 77373792 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger -77104 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 771-23 chr14 29863236 29863551 + 4 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 63703 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 806-5 chr10 83479437 83479658 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 197542 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1538 chr15 95703467 95704162 + 4 NA Intergenic L1MCa|LINE|L1 270721 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 482-241 chr7 30394703 30394935 + 4 NA intron (NR_108081, intron 1 of 2) L1ME1|LINE|L1 3934 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 743-41 chr2 126316236 126316448 + 4 NA Intergenic Intergenic -198357 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 631-115 chr7 46469961 46470183 + 4 NA Intergenic HUERS-P3-int|LTR|ERV1 227050 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 642-84 chr4 96332658 96332945 + 4 NA intron (NR_147149, intron 1 of 3) L1PA11|LINE|L1 22098 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 286-343 chr5 18495316 18495422 + 4 NA Intergenic MamRep605|LTR?|LTR? 688095 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 993-7 chr14 62435074 62435782 + 4 NA Intergenic L1MEc|LINE|L1 -295455 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 922-13 chr16 9168945 9169342 + 4 NA Intergenic LTR16C|LTR|ERVL 77499 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 688-46 chr14 87302029 87302277 + 4 NA Intergenic L1PB2|LINE|L1 353141 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 1019-13 chr2 218777325 218777973 + 4 NA Intergenic Intergenic -4498 NM_000784 1593 Hs.516700 NM_000784 ENSG00000135929 CYP27A1 CP27|CTX|CYP27 cytochrome P450 family 27 subfamily A member 1 protein-coding 639-107 chr6 168115609 168115889 + 4 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -34192 NR_110312 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 815-18 chr15 67686653 67686986 + 4 NA intron (NM_001206804, intron 13 of 21) intron (NM_001206804, intron 13 of 21) 137725 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 788-46 chr7 72517517 72518006 + 4 NA Intergenic L1MD|LINE|L1 -70618 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 815-25 chr2 20055663 20055990 + 4 NA Intergenic HAL1|LINE|L1 -4198 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 615-118 chr6 35236054 35236330 + 4 NA intron (NM_001303136, intron 6 of 21) MIRb|SINE|MIR 22236 NM_152753 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 1000-11 chr2 72400284 72400910 + 4 NA intron (NM_001321729, intron 18 of 22) L1PB4|LINE|L1 -252735 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 833 chr1 59492275 59492613 + 4 NA intron (NM_001350794, intron 6 of 14) HAL1|LINE|L1 -23186 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 638-34 chr13 44101523 44101816 + 4 NA Intergenic L1ME3B|LINE|L1 -8880 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 585-37 chr13 108240322 108240804 + 4 NA Intergenic Intergenic 22171 NM_032859 84945 Hs.183528 NM_032859 ENSG00000139826 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 666-116 chr8 134976142 134976453 + 4 NA Intergenic Intergenic 126362 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 565-6 chr1 106116490 106116643 + 4 NA Intergenic MER41-int|LTR|ERV1 -88313 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 736-19 chr12 23183684 23183882 + 4 NA intron (NR_120471, intron 1 of 4) intron (NR_120471, intron 1 of 4) 8147 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 954-27 chr2 82804327 82804802 + 4 NA Intergenic L1PA13|LINE|L1 -52239 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 679-95 chr6 61727734 61727975 + 4 NA intron (NR_146872, intron 7 of 9) L1PA11|LINE|L1 153724 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 556-158 chr4 82080582 82080822 + 4 NA Intergenic Intergenic 293289 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 772-13 chr12 16098445 16098701 + 4 NA Intergenic L1MC5a|LINE|L1 179112 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 497-199 chr4 46455996 46456207 + 4 NA Intergenic L1MA4|LINE|L1 -65973 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 814-24 chr14 68452413 68452777 + 4 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 176192 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 593-131 chr7 4120378 4120652 + 4 NA intron (NM_152744, intron 25 of 44) L1MEd|LINE|L1 -9170 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1380-4 chr8 99459653 99460261 + 4 NA intron (NM_017890, intron 23 of 61) L1PA4|LINE|L1 76773 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 1378-2 chr6 62880260 62880695 + 4 NA Intergenic SATR1|Satellite|Satellite 439500 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 513-156 chr2 226165915 226166102 + 4 NA intron (NR_046102, intron 4 of 6) MIRb|SINE|MIR 23214 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 805-26 chr21 27038297 27038628 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -71374 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 801-7 chr12 1891936 1892254 + 4 NA intron (NM_172364, intron 6 of 37).2 L1MA4A|LINE|L1 26557 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 812-21 chr14 72255753 72256120 + 4 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -260884 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 777-43 chr22 49043277 49043484 + 4 NA Intergenic Intergenic 176610 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 771-10 chr10 69610528 69610747 + 4 NA Intergenic L1MC3|LINE|L1 -19610 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 221-109 chr17 42444042 42444100 + 4 NA Intergenic Intergenic -14807 NM_005177 535 Hs.463074 NM_005177 ENSG00000033627 ATP6V0A1 ATP6N1|ATP6N1A|Stv1|VPP1|Vph1|a1 ATPase H+ transporting V0 subunit a1 protein-coding 608-62 chr18 61626419 61626636 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -121649 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 586-147 chr8 15969055 15969251 + 4 NA Intergenic Intergenic 217119 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 490-121 chr18 70841155 70841333 + 4 NA Intergenic Intergenic -190290 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 578-66 chr16 54349265 54349496 + 4 NA Intergenic MIRb|SINE|MIR 21078 NR_134922 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 841-5 chr11 103409519 103409819 + 4 NA intron (NM_001377, intron 84 of 88) intron (NM_001377, intron 84 of 88) 300243 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 752-15 chr12 39219922 39220222 + 4 NA Intergenic Intergenic 223048 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 656-43 chr16 73219152 73219401 + 4 NA Intergenic Intergenic -74829 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 431-139 chr2 112204813 112205068 + 4 NA Intergenic L1M4|LINE|L1 50102 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 931-9 chr18 69447412 69447795 + 4 NA intron (NM_152721, intron 1 of 7) L1M4|LINE|L1 -22328 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 1080-23 chr6 157032570 157032973 + 4 NA intron (NM_020732, intron 5 of 19) L1ME3G|LINE|L1 -3656 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 518-107 chr17 51770318 51770472 + 4 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 334968 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 829-17 chr16 53571411 53571632 + 4 NA Intergenic L1MEb|LINE|L1 -68217 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 1089-10 chr4 60982494 60982983 + 4 NA Intergenic L1M4b|LINE|L1 60119 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 866 chr1 95706545 95706923 + 4 NA Intergenic Intergenic 196618 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 636-86 chr21 21454744 21455005 + 4 NA intron (NM_001352592, intron 13 of 18) intron (NM_001352592, intron 13 of 18) 282445 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 758-31 chr17 53025459 53025717 + 4 NA Intergenic LTR40a|LTR|ERVL 40083 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 790-8 chr12 50500828 50501210 + 4 NA Intergenic AluJo|SINE|Alu -3966 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 584-159 chr7 25422533 25422706 + 4 NA Intergenic MamRep564|Unknown|Unknown -194133 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 1390-2 chr3 161278427 161279083 + 4 NA Intergenic AluSp|SINE|Alu 57465 NM_001320227 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 756-46 chr5 8203545 8203863 + 4 NA Intergenic Intergenic 253860 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 632-69 chr22 27970372 27970637 + 4 NA intron (NR_026963, intron 2 of 4) L1ME2|LINE|L1 -49892 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 519-51 chr12 118933358 118933602 + 4 NA Intergenic Intergenic -48061 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 884-27 chr22 28264737 28265140 + 4 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -194931 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 646-33 chr12 130183340 130183509 + 4 NA Intergenic MIR|SINE|MIR 20965 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 594-12 chr1 238605069 238605357 + 4 NA Intergenic Intergenic -119196 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 1206-8 chr6 166053534 166054050 + 4 NA Intergenic L1ME1|LINE|L1 -43928 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 1743-4 chr5 60087969 60088849 + 4 NA intron (NM_001349243, intron 2 of 16) L1MA4|LINE|L1 -194683 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 690-88 chr5 173600997 173601310 + 4 NA Intergenic L1MC4|LINE|L1 15497 NM_138369 91272 Hs.425091 NM_138369 ENSG00000145919 BOD1 FAM44B biorientation of chromosomes in cell division 1 protein-coding 646-20 chr10 104479282 104479486 + 4 NA intron (NR_120624, intron 1 of 2) intron (NR_120624, intron 1 of 2) 891 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 769-46 chr4 135788214 135788503 + 4 NA Intergenic Intergenic 99735 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 454-106 chr15 76788154 76788280 + 4 NA intron (NM_001353011, intron 9 of 32) intron (NM_001353011, intron 9 of 32) 73727 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 552-81 chr16 63556347 63556568 + 4 NA Intergenic Intergenic -1520019 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 655-61 chr2 104988020 104988349 + 4 NA intron (NR_110603, intron 1 of 2) L1PA8|LINE|L1 -49885 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 519-245 chr8 138323081 138323355 + 4 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 174043 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 874-2 chr1 108792358 108792738 + 4 NA intron (NM_007269, intron 11 of 18) L1MA4|LINE|L1 45874 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 855-12 chr14 38652513 38652893 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -229893 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 896-29 chr6 40560753 40561161 + 4 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 26407 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 715-40 chr2 119509395 119509722 + 4 NA intron (NM_002980, intron 1 of 12) intron (NM_002980, intron 1 of 12) 14894 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 482-107 chr18 38170881 38171116 + 4 NA Intergenic L1MEc|LINE|L1 513863 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 696-89 chr6 64565855 64566242 + 4 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) -735370 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 580-79 chr2 56034398 56034605 + 4 NA intron (NR_126406, intron 1 of 2) intron (NR_126406, intron 1 of 2) 12825 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 426-201 chr4 35353411 35353604 + 4 NA Intergenic Intergenic 890432 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 404-60 chr11 25655400 25655517 + 4 NA Intergenic Intergenic -533665 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 583-111 chr3 95027623 95027956 + 4 NA Intergenic Intergenic 89526 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 1008-11 chr21 29833889 29834427 + 4 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 85983 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 646-84 chr3 29193670 29193927 + 4 NA Intergenic AluJo|SINE|Alu 87141 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 823-16 chr17 31664566 31664930 + 4 NA Intergenic L1MEf|LINE|L1 89337 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 654-24 chr11 39258616 39258835 + 4 NA Intergenic L2c|LINE|L2 609867 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 1334 chr13 97794100 97794872 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -159189 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 337-135 chr13 61083370 61083496 + 4 NA Intergenic Intergenic 116447 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 1194-4 chr20 48755079 48755609 + 4 NA intron (NM_020820, intron 1 of 39) MLT1J|LTR|ERVL-MaLR 72655 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 888-31 chr4 162350552 162350917 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -186700 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 795-19 chr13 86353169 86353397 + 4 NA Intergenic Intergenic -553864 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 373-40 chr10 4495125 4495288 + 4 NA Intergenic Intergenic 88737 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 406-278 chr7 68818669 68818849 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 778865 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 520-169 chr20 61705757 61705958 + 4 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 13891 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 602-99 chr5 5566297 5566482 + 4 NA Intergenic Intergenic 143712 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 772-48 chr7 27952681 27953011 + 4 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 212751 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 850-26 chr20 42274005 42274318 + 4 NA intron (NM_133170, intron 13 of 31) intron (NM_133170, intron 13 of 31) -411322 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 712-44 chr2 116192460 116192740 + 4 NA Intergenic L1M1|LINE|L1 848785 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 648-65 chr19 37424036 37424306 + 4 NA intron (NM_001330482, intron 4 of 4) intron (NM_001330482, intron 4 of 4) 43273 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 1184-6 chr2 81781988 81782576 + 4 NA Intergenic L1M1|LINE|L1 -315336 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 664-72 chr3 60992114 60992377 + 4 NA intron (NR_148922, intron 3 of 3) L1ME3|LINE|L1 259207 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 413-233 chr5 27557349 27557474 + 4 NA Intergenic L1MD|LINE|L1 85119 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 406-243 chr5 143722654 143722832 + 4 NA Intergenic L1PA16|LINE|L1 42883 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 1236-3 chr17 79505575 79506015 + 4 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) 10353 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 723-22 chr14 57599979 57600337 + 4 NA intron (NM_001306087, intron 1 of 7) intron (NM_001306087, intron 1 of 7) -106301 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 898-17 chr18 4391741 4392115 + 4 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 63338 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 549-171 chr5 118052339 118052566 + 4 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -230122 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 1870 chr4 163820 164831 + 4 NA TTS (NM_001289930) TTS (NM_001289930) 36204 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 590-166 chr8 92166653 92166868 + 4 NA Intergenic Intergenic -63375 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 804-28 chr19 57687199 57687641 + 4 NA exon (NM_138347, exon 3 of 3) exon (NM_138347, exon 3 of 3) 5443 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 722-8 chr1 221221437 221221774 + 4 NA Intergenic Intergenic 114691 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 775-19 chr11 83388429 83388784 + 4 NA Intergenic L1M2|LINE|L1 -102199 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 880-14 chr17 59256783 59257197 + 4 NA intron (NM_182569, intron 4 of 9) L1ME4a|LINE|L1 36479 NM_182569 284161 Hs.631744 NM_182569 ENSG00000153982 GDPD1 GDE4 glycerophosphodiester phosphodiesterase domain containing 1 protein-coding 825-6 chr12 47599163 47599545 + 4 NA Intergenic L1MC4|LINE|L1 106676 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 1138-5 chr11 38944040 38944497 + 4 NA Intergenic Intergenic 295410 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 501-156 chr3 25495225 25495400 + 4 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 37002 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 814-65 chr9 36712460 36712671 + 4 NA Intergenic Intergenic 111034 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 926-14 chr2 150385899 150386440 + 4 NA Intergenic L1PB3|LINE|L1 101526 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 1058-15 chr5 114062298 114062777 + 4 NA Intergenic Intergenic -299533 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 529-13 chr10 39053679 39053859 + 4 NA Intergenic ALR/Alpha|Satellite|centr 357173 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 774-92 chr9 34533472 34533685 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -10588 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 804-55 chr5 55422160 55422420 + 4 NA intron (NM_015360, intron 25 of 26) intron (NM_015360, intron 25 of 26) 86636 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 605-123 chr8 130558278 130558460 + 4 NA Intergenic MIRb|SINE|MIR -114695 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 510-52 chr11 83464839 83465051 + 4 NA intron (NM_001142699, intron 26 of 27) intron (NM_001142699, intron 26 of 27) -178538 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 728-100 chr8 118687298 118687604 + 4 NA intron (NR_038210, intron 3 of 4) L1MD2|LINE|L1 -65488 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 674-24 chr13 92978266 92978456 + 4 NA Intergenic Intergenic -66980 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 598-104 chr5 34554265 34554495 + 4 NA Intergenic AluJb|SINE|Alu -101948 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 892-16 chr14 89742139 89742545 + 4 NA Intergenic MLT1J2|LTR|ERVL-MaLR -123177 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 533-50 chr14 54155147 54155418 + 4 NA Intergenic L1PREC2|LINE|L1 -198391 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 704-90 chr8 136847429 136847703 + 4 NA intron (NR_147196, intron 4 of 5) L1PA16|LINE|L1 316768 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 815-3 chr1 94627002 94627277 + 4 NA intron (NR_160780, intron 4 of 5) intron (NR_160780, intron 4 of 5) 83437 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 515-153 chr3 7863767 7864031 + 4 NA Intergenic Intergenic 152408 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 623-34 chr14 88756241 88756460 + 4 NA intron (NM_183387, intron 1 of 42) L1MB7|LINE|L1 36603 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 795-26 chr18 67350789 67351288 + 4 NA Intergenic L2|LINE|L2 -165508 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 526-190 chr4 135101936 135102306 + 4 NA Intergenic Intergenic 21438 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 659-124 chr8 131581018 131581326 + 4 NA Intergenic Intergenic -322921 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 701-49 chr20 39116799 39117115 + 4 NA Intergenic L1MB3|LINE|L1 107791 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 1731-2 chr2 55903156 55903906 + 4 NA intron (NM_001039349, intron 4 of 10) MER5A1|DNA|hAT-Charlie 20251 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 891-44 chr9 90409741 90410130 + 4 NA intron (NR_109795, intron 1 of 2) L1MB4|LINE|L1 23554 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 762-43 chr3 77584558 77584925 + 4 NA intron (NM_001290039, intron 17 of 26) intron (NM_001290039, intron 17 of 26) 464222 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 835-7 chr11 50597433 50597852 + 4 NA Intergenic ALR/Alpha|Satellite|centr 188495 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 783-63 chr5 125600838 125601223 + 4 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 107769 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 751-52 chr4 105042061 105042435 + 4 NA Intergenic Intergenic -103627 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 359-511 chr9 91865089 91865216 + 4 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 85076 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 630-33 chr14 72763800 72764055 + 4 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 128722 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 697-28 chr15 58457988 58458330 + 4 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 26168 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 1024-7 chr10 10744149 10744645 + 4 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 50517 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 609-112 chr5 129986691 129987007 + 4 NA intron (NM_175856, intron 2 of 2) AluJb|SINE|Alu 82384 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 880-41 chr6 144382307 144382755 + 4 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) -23124 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 666-6 chr10 49208476 49208875 + 4 NA Intergenic MIR|SINE|MIR -20284 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 918-28 chr8 129577913 129578443 + 4 NA intron (NR_130917, intron 1 of 3) L1ME3A|LINE|L1 -3160 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 1083-9 chr2 103271860 103272468 + 4 NA Intergenic (TTATTT)n|Simple_repeat|Simple_repeat -287735 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 622-74 chr2 226106831 226107049 + 4 NA Intergenic L1MEd|LINE|L1 -35854 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 666-94 chr5 56469512 56469866 + 4 NA intron (NR_104664, intron 1 of 4) intron (NR_104664, intron 1 of 4) 12080 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 643-93 chr5 52334934 52335162 + 4 NA Intergenic Intergenic 327017 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 375-353 chr6 68500044 68500194 + 4 NA Intergenic Intergenic 134205 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 1777 chr19 37567183 37568135 + 4 NA non-coding (NR_038248, exon 4 of 6) non-coding (NR_038248, exon 4 of 6) 16285 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 624-111 chr6 76159074 76159440 + 4 NA Intergenic Intergenic -86579 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 544-12 chr1 158918257 158918552 + 4 NA Intergenic L2a|LINE|L2 -13148 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 1434-7 chr8 144563483 144563969 + 4 NA intron (NM_025251, intron 2 of 10) AluJr|SINE|Alu -34615 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 521-99 chr16 71709015 71709222 + 4 NA intron (NM_015020, intron 2 of 18) intron (NM_015020, intron 2 of 18) 6722 NM_001289003 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 600-134 chr8 129423112 129423396 + 4 NA intron (NR_130920, intron 1 of 3) L1M1|LINE|L1 60888 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 1640-3 chr6 163592741 163593491 + 4 NA Intergenic (TACAGA)n|Simple_repeat|Simple_repeat 78368 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 543-135 chr2 167171516 167171704 + 4 NA intron (NM_152381, intron 3 of 10) L1ME2|LINE|L1 -15762 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 658-4 chr1 51028373 51028590 + 4 NA Intergenic L1M4a1|LINE|L1 -31356 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 617-70 chr2 164167005 164167187 + 4 NA Intergenic L1MB8|LINE|L1 401399 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 1259 chr1 193756286 193756701 + 4 NA Intergenic L1ME2|LINE|L1 451748 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 802-28 chr2 11172214 11172583 + 4 NA intron (NM_001282710, intron 5 of 5) intron (NM_001282710, intron 5 of 5) 16931 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 1062-4 chr12 38019603 38020113 + 4 NA Intergenic ALR/Alpha|Satellite|centr -296916 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 558-127 chr22 48787604 48787772 + 4 NA Intergenic Intergenic 7393 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 655-127 chr8 118717410 118717630 + 4 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -95557 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 483-204 chr5 31681753 31681961 + 4 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 42726 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 522-21 chr10 58541333 58541577 + 4 NA intron (NM_001080512, intron 1 of 20) L1MB2|LINE|L1 28583 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 624-70 chr2 145492921 145493148 + 4 NA Intergenic Intergenic 825067 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 676-8 chr1 112191445 112191706 + 4 NA Intergenic LTR16|LTR|ERVL 201039 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 568-109 chr2 88968765 88969023 + 4 NA Intergenic MER4D0|LTR|ERV1 156524 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 881-24 chr20 52773619 52774072 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 153007 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 755-45 chr4 84936944 84937313 + 4 NA intron (NM_014991, intron 1 of 67) L2a|LINE|L2 -28488 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 798-14 chr14 65520141 65520518 + 4 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 49227 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 590-74 chr2 12483971 12484227 + 4 NA intron (NR_110196, intron 4 of 5) Charlie1a|DNA|hAT-Charlie -232773 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 432-130 chr2 82911653 82911790 + 4 NA Intergenic Intergenic 54918 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 664-123 chr9 31882982 31883188 + 4 NA Intergenic Intergenic -501518 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 738-32 chr19 30274333 30274627 + 4 NA Intergenic MER33|DNA|hAT-Charlie -97904 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 692-57 chr20 43803627 43803977 + 4 NA Intergenic L1MB7|LINE|L1 -76800 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 720-47 chr2 176926346 176926709 + 4 NA Intergenic L1MB7|LINE|L1 285884 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 684-28 chr12 73871832 73872087 + 4 NA Intergenic Intergenic 420672 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 1006-3 chr10 68120517 68120872 + 4 NA intron (NM_001256268, intron 2 of 23) intron (NM_001256268, intron 2 of 23) 11206 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 949-9 chr2 21747864 21748333 + 4 NA Intergenic Intergenic -37446 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 619-83 chr22 44417393 44417622 + 4 NA Intergenic L1MEf|LINE|L1 -25820 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 631-31 chr12 111307200 111307385 + 4 NA intron (NM_015267, intron 12 of 21) intron (NM_015267, intron 12 of 21) 3150 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 637-50 chr18 1178995 1179411 + 4 NA Intergenic L1MB1|LINE|L1 180426 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 488-47 chr11 41976141 41976292 + 4 NA Intergenic Intergenic 109242 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 819-28 chr5 81028011 81028379 + 4 NA intron (NM_006909, intron 1 of 26) intron (NM_006909, intron 1 of 26) -67288 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 788-50 chr8 98907371 98907811 + 4 NA intron (NM_001256312, intron 1 of 12) L1MC5|LINE|L1 35019 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 581-62 chr17 73777015 73777164 + 4 NA intron (NR_027146, intron 2 of 3) intron (NR_027146, intron 2 of 3) -9733 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 514-283 chr8 84533683 84533953 + 4 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) 118334 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 895-37 chr5 114525165 114525412 + 4 NA intron (NR_130785, intron 3 of 12) L1PA13|LINE|L1 -50753 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 827-60 chrUn_KI270442v1 30995 31432 + 4 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 969-18 chr4 60635227 60635603 + 4 NA Intergenic L1PA16|LINE|L1 -287204 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 752-9 chr11 87906677 87906948 + 4 NA Intergenic L1ME4b|LINE|L1 -187401 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 694-81 chr22 48691470 48691741 + 4 NA intron (NM_001082967, intron 2 of 3) intron (NM_001082967, intron 2 of 3) -88690 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 482-269 chr8 84021309 84021546 + 4 NA Intergenic Intergenic -161360 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 898-35 chr7 62709153 62709524 + 4 NA Intergenic ALR/Alpha|Satellite|centr 594718 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1415-7 chr5 33385407 33386021 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -54982 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 617-117 chr6 51581084 51581281 + 4 NA Intergenic Intergenic -40688 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 706-25 chr14 99702525 99702955 + 4 NA intron (NM_006668, intron 5 of 14) L1MC4|LINE|L1 18442 NM_006668 10858 Hs.25121 NM_006668 ENSG00000036530 CYP46A1 CP46|CYP46 cytochrome P450 family 46 subfamily A member 1 protein-coding 609-100 chr5 53181157 53181474 + 4 NA Intergenic Intergenic 71473 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 677-20 chr11 54809939 54810198 + 4 NA Intergenic ALR/Alpha|Satellite|centr 103236 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 1061-15 chr8 52094640 52095120 + 4 NA Intergenic Intergenic -99482 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 1103-4 chr12 55070335 55070882 + 4 NA Intergenic MIRb|SINE|MIR 50634 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 836-11 chr10 48946140 48946447 + 4 NA intron (NM_020945, intron 50 of 61) MER5B|DNA|hAT-Charlie -32058 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 638-134 chr6 61240497 61240703 + 4 NA Intergenic L1M4|LINE|L1 -333530 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 616-31 chr12 74239379 74239678 + 4 NA intron (NR_038300, intron 3 of 6) Tigger2|DNA|TcMar-Tigger 53103 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 499-233 chr6 153218923 153219166 + 4 NA Intergenic L1ME3E|LINE|L1 -87762 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 904-6 chr10 96438222 96438680 + 4 NA intron (NM_012465, intron 3 of 20) L1MD2|LINE|L1 75475 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 1519-2 chr3 60274154 60274918 + 4 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -193627 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 703-35 chr16 26045396 26045648 + 4 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 20285 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 889-8 chr12 14746799 14747212 + 4 NA Intergenic Intergenic 24126 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 836-51 chr6 66087389 66087709 + 4 NA Intergenic L1MA8|LINE|L1 299670 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 998-8 chr12 128343731 128344083 + 4 NA intron (NM_001136103, intron 1 of 8) L1MB7|LINE|L1 49815 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 1405 chr1 228914821 228915436 + 4 NA Intergenic Intergenic 179649 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 643-40 chr16 9397898 9398061 + 4 NA intron (NR_135195, intron 1 of 2) MIR3|SINE|MIR 42391 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 594-56 chr17 27192678 27192947 + 4 NA Intergenic ALR/Alpha|Satellite|centr 101184 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 1083-5 chr13 104829015 104829517 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -636601 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 555-206 chr8 112482996 112483234 + 4 NA intron (NM_001363185, intron 29 of 66) intron (NM_001363185, intron 29 of 66) -160378 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 682-78 chr5 52300308 52300625 + 4 NA Intergenic Intergenic 292435 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 585-43 chr14 70536527 70536700 + 4 NA Intergenic LTR19A|LTR|ERV1 -1609 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 790-61 chrX 30355978 30356324 + 4 NA Intergenic L1PA13|LINE|L1 -46761 NM_000475 190 Hs.268490 NM_000475 ENSG00000169297 NR0B1 AHC|AHCH|AHX|DAX-1|DAX1|DSS|GTD|HHG|NROB1|SRXY2 nuclear receptor subfamily 0 group B member 1 protein-coding 720-22 chr11 131126912 131127212 + 4 NA Intergenic FRAM|SINE|Alu -210575 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 534-79 chr15 47298109 47298369 + 4 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 114150 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 698-10 chr1 221484675 221485121 + 4 NA Intergenic Intergenic -148602 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 1608-5 chr8 136782542 136783262 + 4 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 252104 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 420-103 chr17 65337670 65337842 + 4 NA Intergenic L1ME1|LINE|L1 -119785 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 1061-7 chr17 40657308 40657609 + 4 NA exon (NM_152349, exon 5 of 6) exon (NM_152349, exon 5 of 6) 7719 NM_152349 125113 Hs.6920 NM_152349 ENSG00000213424 KRT222 KA21|KRT222P keratin 222 protein-coding 731-52 chr4 36548529 36548783 + 4 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 93244 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 1115-13 chr4 73817916 73818457 + 4 NA Intergenic Intergenic -18492 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 437-177 chr3 133702338 133702543 + 4 NA intron (NM_001354703, intron 3 of 22) intron (NM_001354703, intron 3 of 22) 40442 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 488-287 chr9 28111706 28111912 + 4 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -537943 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 373-435 chr9 85154096 85154338 + 4 NA Intergenic MSTB2|LTR|ERVL-MaLR 448316 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 630-110 chr5 106489429 106489697 + 4 NA Intergenic Intergenic 521451 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 743-73 chr6 107402176 107402513 + 4 NA intron (NM_020381, intron 1 of 7) L1M2|LINE|L1 57220 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 465-106 chr17 71899362 71899553 + 4 NA Intergenic Intergenic 126522 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 1088-3 chr12 6816730 6817062 + 4 NA intron (NM_000616, intron 6 of 9) intron (NM_000616, intron 6 of 9) -4925 NM_019858 27239 Hs.631654 NM_014449 ENSG00000250510 GPR162 A-2|GRCA G protein-coupled receptor 162 protein-coding 250-17 chr1 114455005 114455083 + 4 NA intron (NM_015906, intron 4 of 19) MER4B-int|LTR|ERV1 56159 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 797-47 chr6 77280200 77280612 + 4 NA Intergenic L1PREC2|LINE|L1 183616 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 698-54 chr3 35393466 35393726 + 4 NA intron (NR_110817, intron 1 of 3) THE1C|LTR|ERVL-MaLR 427 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 570-90 chr16 82740726 82740921 + 4 NA intron (NM_001220488, intron 2 of 14) MLT1H|LTR|ERVL-MaLR -32496 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 1110-15 chr6 56169797 56170391 + 4 NA intron (NM_030820, intron 5 of 29) intron (NM_030820, intron 5 of 29) 77486 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 686-56 chr3 107166106 107166423 + 4 NA intron (NR_028303, intron 1 of 3) AluSz|SINE|Alu 74374 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 1186-4 chr12 55571712 55572369 + 4 NA Intergenic Intergenic -2375 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 674-78 chr5 53209255 53209542 + 4 NA Intergenic MER4B-int|LTR|ERV1 99556 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 557-206 chr8 123587482 123587677 + 4 NA Intergenic Intergenic -46373 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 638-127 chr5 150947785 150948005 + 4 NA Intergenic Intergenic -1311 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 446-242 chr5 82033830 82034078 + 4 NA intron (NM_031482, intron 2 of 7) (TA)n|Simple_repeat|Simple_repeat 61931 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 1904 chr19 44485419 44486290 + 4 NA intron (NM_001288760, intron 3 of 6) L1MC4a|LINE|L1 14668 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 491-202 chr5 19053721 19054108 + 4 NA Intergenic MIRb|SINE|MIR 832358 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 800-65 chr8 126900752 126901097 + 4 NA Intergenic THE1D|LTR|ERVL-MaLR -112230 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 622-92 chr4 35757538 35757804 + 4 NA Intergenic L1MA3|LINE|L1 486268 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 728-97 chr8 59942541 59942779 + 4 NA Intergenic Intergenic 338740 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 368-436 chr7 129073098 129073266 + 4 NA Intergenic LTR45B|LTR|ERV1 17959 NR_002187 286016 Hs.369665 NR_002187 ENSG00000230359 TPI1P2 - triosephosphate isomerase 1 pseudogene 2 pseudo 1190-9 chr5 132376171 132376525 + 4 NA intron (NM_003060, intron 1 of 9) intron (NM_003060, intron 1 of 9) -6432 NR_110997 553103 Hs.570908 NR_110997 ENSG00000233006 MIR3936HG SLC22A5-AS1 MIR3936 host gene ncRNA 879-17 chr2 152147949 152148215 + 4 NA exon (NM_005843, exon 4 of 14) exon (NM_005843, exon 4 of 14) 27681 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 526-17 chr10 22198981 22199188 + 4 NA Intergenic L1MCa|LINE|L1 10899 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 892-40 chr8 126126509 126126916 + 4 NA Intergenic L1M5|LINE|L1 -175515 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 596-28 chr10 63797495 63797734 + 4 NA Intergenic Intergenic -275724 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 878-7 chr10 85045866 85046183 + 4 NA Intergenic Intergenic 152881 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 763-53 chr6 37660809 37661110 + 4 NA intron (NM_153487, intron 2 of 16) intron (NM_153487, intron 2 of 16) 36924 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 567-151 chr5 160989576 160989898 + 4 NA Intergenic L1MA7|LINE|L1 -51111 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 414-364 chrX 88069887 88070028 + 4 NA Intergenic Intergenic 552155 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 720-15 chr11 8047760 8048123 + 4 NA intron (NM_003320, intron 2 of 12) L2a|LINE|L2 9308 NM_003320 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 817-24 chr2 34326619 34326859 + 4 NA Intergenic Intergenic 259513 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 454-195 chr21 30709633 30709833 + 4 NA Intergenic Intergenic 9044 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 688-111 chr8 139528669 139529002 + 4 NA Intergenic Intergenic 174288 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 733-60 chr4 172842541 172842747 + 4 NA intron (NM_001034845, intron 7 of 12) intron (NM_001034845, intron 7 of 12) -115766 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 794-13 chr11 115443196 115443640 + 4 NA intron (NM_001098517, intron 1 of 8) MIRc|SINE|MIR 46662 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 952-24 chr7 63910755 63911198 + 4 NA Intergenic L1M3a|LINE|L1 -87830 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 1219-3 chr10 49660492 49661175 + 4 NA intron (NM_001142929, intron 13 of 14) intron (NM_001142929, intron 13 of 14) -18818 NM_001042427 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 594-82 chr2 225972476 225972725 + 4 NA Intergenic Intergenic -170194 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 537-135 chr2 239615688 239616005 + 4 NA Intergenic L1ME3|LINE|L1 -147014 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 492-113 chr18 5343898 5344071 + 4 NA Intergenic L1M5|LINE|L1 -46931 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 774-15 chr11 107227376 107227611 + 4 NA Intergenic Intergenic -209017 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 721-22 chr17 39113147 39113370 + 4 NA intron (NM_020405, intron 2 of 13) MLT1C|LTR|ERVL-MaLR 38379 NM_020405 57125 Hs.125036 NM_020405 ENSG00000161381 PLXDC1 TEM3|TEM7 plexin domain containing 1 protein-coding 1952 chr1 227659599 227660382 + 4 NA 3' UTR (NM_001367910, exon 5 of 5) 3' UTR (NM_001367910, exon 5 of 5) 37717 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 530-276 chr9 85521072 85521264 + 4 NA Intergenic Intergenic 220861 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 875-35 chr8 120294756 120295079 + 4 NA intron (NM_021110, intron 34 of 47) intron (NM_021110, intron 34 of 47) 150233 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 577-23 chr10 20647071 20647236 + 4 NA Intergenic Intergenic 95183 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 709-48 chr20 55556365 55556596 + 4 NA Intergenic MIR|SINE|MIR -129283 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 907-3 chr1 229804919 229805341 + 4 NA Intergenic LTR8A|LTR|ERV1 80688 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 738-30 chr17 65602261 65602702 + 4 NA Intergenic Intergenic -40833 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 966-16 chr3 6599043 6599654 + 4 NA Intergenic Intergenic 206101 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 669-3 chr1 58007535 58007874 + 4 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 147123 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 1055-17 chr5 80933781 80934116 + 4 NA Intergenic AluSq2|SINE|Alu -26415 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 523-232 chr5 145378615 145378819 + 4 NA Intergenic L1PA13|LINE|L1 456625 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 338-73 chr10 96362387 96362535 + 4 NA Intergenic Intergenic -3096 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 1110 chr10 22760180 22760590 + 4 NA Intergenic Intergenic -45807 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 796-28 chr2 79382958 79383302 + 4 NA Intergenic Intergenic 117714 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 597-124 chr7 29848716 29848978 + 4 NA intron (NM_001080529, intron 2 of 8) L1MC5|LINE|L1 42293 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 902-25 chr21 45188901 45189418 + 4 NA intron (NR_027674, intron 8 of 11) THE1B|LTR|ERVL-MaLR 36629 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 785-18 chr13 108744666 108744976 + 4 NA intron (NM_015011, intron 4 of 34) intron (NM_015011, intron 4 of 34) 115210 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 984-6 chr17 71351545 71352028 + 4 NA Intergenic Intergenic -149607 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1177-9 chr7 138655840 138656329 + 4 NA intron (NM_174959, intron 3 of 11) Tigger1|DNA|TcMar-Tigger 8140 NM_174959 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 649 chr1 17325018 17325211 + 4 NA intron (NM_012387, intron 1 of 15).2 L1MEd|LINE|L1 16917 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 718-58 chr4 30244611 30244933 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -475597 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 425-332 chrX 114517123 114517310 + 4 NA Intergenic Intergenic -66862 NM_001256760 3358 Hs.149037 NM_000868 ENSG00000147246 HTR2C 5-HT1C|5-HT2C|5-HTR2C|5HTR2C|HTR1C 5-hydroxytryptamine receptor 2C protein-coding 1794-2 chr7 62608932 62610101 + 4 NA Intergenic ALR/Alpha|Satellite|centr 694540 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 981-15 chr20 15289317 15289791 + 4 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 92714 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 732-7 chr10 4741039 4741387 + 4 NA Intergenic Intergenic -63143 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 525-96 chr18 1373670 1373865 + 4 NA Intergenic Intergenic -14138 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 672-13 chr10 120936085 120936272 + 4 NA Intergenic L1MEg|LINE|L1 84816 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 793-5 chr10 22907058 22907379 + 4 NA Intergenic Intergenic -20806 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 766-13 chr12 34578229 34578523 + 4 NA Intergenic ALR/Alpha|Satellite|centr 555880 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 721-46 chr20 19597448 19597799 + 4 NA intron (NM_020689, intron 6 of 16) L1MA4A|LINE|L1 -288898 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 801-2 chr1 111084470 111084699 + 4 NA Intergenic L1PA15|LINE|L1 -54799 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 645-128 chr8 131043117 131043374 + 4 NA Intergenic Intergenic -2336 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 737-19 chr12 66909398 66909725 + 4 NA Intergenic Intergenic -105292 NM_001366723 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 526-126 chr2 82412724 82413053 + 4 NA Intergenic Intergenic -443915 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 579-10 chr1 227556334 227556510 + 4 NA Intergenic HERV3-int|LTR|ERV1 -7134 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 846-7 chr11 78998582 78999074 + 4 NA intron (NM_001098816, intron 6 of 33) L1M4a1|LINE|L1 403281 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 719-66 chr5 127361948 127362284 + 4 NA intron (NM_001308121, intron 4 of 13) L1ME1|LINE|L1 71320 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 831-23 chr2 194565975 194566230 + 4 NA Intergenic Intergenic -164493 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 881-30 chr4 45235174 45235662 + 4 NA Intergenic L1MCb|LINE|L1 -508784 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 990-15 chr2 217158846 217159358 + 4 NA Intergenic Intergenic -123631 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 508-95 chr2 27976945 27977110 + 4 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -19340 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 723-8 chr1 170472734 170472999 + 4 NA intron (NR_125958, intron 1 of 2) intron (NR_125958, intron 1 of 2) -59256 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 1414 chr5 66483730 66484589 + 4 NA Intergenic L1MB7|LINE|L1 27445 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 931-23 chr6 28200633 28200893 + 4 NA Intergenic L1MB2|LINE|L1 18166 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 403-216 chr4 45779142 45779289 + 4 NA Intergenic Intergenic 344839 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 780-43 chr4 64292619 64292933 + 4 NA intron (NM_001363796, intron 8 of 11) intron (NM_001363796, intron 8 of 11) 116674 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 509-270 chr9 101782747 101782903 + 4 NA Intergenic L1MEd|LINE|L1 -44245 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 574-78 chr2 79350763 79351033 + 4 NA Intergenic L1PA17|LINE|L1 149946 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 704-63 chr4 126989279 126989569 + 4 NA Intergenic Intergenic -643533 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 451-249 chr8 141685612 141685781 + 4 NA Intergenic Intergenic 100617 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 1048-2 chr1 152764000 152764370 + 4 NA Intergenic MER5A|DNA|hAT-Charlie 6160 NM_001025231 448834 Hs.149386 NM_001025231 ENSG00000203786 KPRP C1orf45 keratinocyte proline rich protein protein-coding 732-29 chr15 95485786 95486157 + 4 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 52878 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 865-52 chrX 114842626 114843151 + 4 NA intron (NM_001256760, intron 5 of 6) L1M4|LINE|L1 19434 NR_029955 554212 NR_029955 ENSG00000199001 MIR448 MIRN448|hsa-mir-448|miRNA448 microRNA 448 ncRNA 646-25 chr11 115854594 115854874 + 4 NA Intergenic L1ME3|LINE|L1 -94534 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 832-32 chr4 80108697 80109087 + 4 NA Intergenic L1MEg|LINE|L1 -35420 NM_001286780 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 810-17 chr18 62663889 62664134 + 4 NA Intergenic Intergenic -51530 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 1915-2 chr2 48036907 48037978 + 4 NA Intergenic L1M4|LINE|L1 -131649 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 653-71 chr2 125621893 125622085 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 495996 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 845-5 chr10 57288594 57288893 + 4 NA Intergenic L1ME2z|LINE|L1 15816 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 588-109 chr4 42744125 42744314 + 4 NA Intergenic Intergenic -87114 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 1074-16 chr8 46307109 46307583 + 4 NA Intergenic ALR/Alpha|Satellite|centr 310297 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 650-86 chr4 46634944 46635125 + 4 NA Intergenic L1PA15|LINE|L1 -244906 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 988 chr1 85918731 85919077 + 4 NA intron (NM_152890, intron 24 of 59) intron (NM_152890, intron 24 of 59) -210471 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 732-73 chr5 56538037 56538458 + 4 NA intron (NR_161255, intron 2 of 5) Charlie9|DNA|hAT-Charlie -56478 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 1247-2 chr12 130529965 130530561 + 4 NA intron (NM_001351226, intron 2 of 21) MamRep137|DNA|TcMar-Tigger 98193 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 659-80 chr4 57790013 57790301 + 4 NA Intergenic Intergenic 364285 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 656-140 chr9 97199691 97200008 + 4 NA intron (NR_136286, intron 3 of 17) intron (NR_136286, intron 3 of 17) -38577 NR_036526 100499484 Hs.435629 NR_036526 ENSG00000254876 SUGT1P4-STRA6LP - SUGT1P4-STRA6LP readthrough pseudo 902 chr1 191553074 191553588 + 4 NA Intergenic Intergenic -324833 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 761-12 chr13 28092044 28092355 + 4 NA intron (NM_004119, intron 1 of 23) (CTCTCCT)n|Simple_repeat|Simple_repeat 8377 NR_130706 2322 Hs.507590 NM_004119 ENSG00000122025 FLT3 CD135|FLK-2|FLK2|STK1 fms related tyrosine kinase 3 protein-coding 581-27 chr11 78669765 78669917 + 4 NA exon (NM_001098816, exon 32 of 34) exon (NM_001098816, exon 32 of 34) -94977 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 797-7 chr10 61259347 61259712 + 4 NA Intergenic MER5A1|DNA|hAT-Charlie -193110 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 340-102 chr12 28563386 28563533 + 4 NA Intergenic MIRc|SINE|MIR -372721 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 840-31 chr2 241025431 241025777 + 4 NA intron (NM_001080437, intron 1 of 31) L1MA9|LINE|L1 26986 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 963-10 chr14 61759670 61760046 + 4 NA Intergenic MLT1A1|LTR|ERVL-MaLR -2562 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 726-44 chr2 183255972 183256392 + 4 NA Intergenic Intergenic 131739 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 494-278 chr7 153704762 153704899 + 4 NA Intergenic L1MEd|LINE|L1 -43303 NM_001364498 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 1081 chr1 237619645 237620142 + 4 NA intron (NM_001035, intron 38 of 104) L1MDa|LINE|L1 148774 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 588-119 chr4_GL000008v2_random 625 878 + 4 NA Intergenic (GGAGT)n|Simple_repeat|Simple_repeat 177420 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 837-14 chr2 17371585 17371986 + 4 NA Intergenic L1PB1|LINE|L1 146655 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 724-102 chr8 134199910 134200267 + 4 NA Intergenic Intergenic 313592 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 682-63 chr3 106575138 106575491 + 4 NA Intergenic Intergenic 665324 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 769-62 chr7 55142482 55142841 + 4 NA intron (NM_201284, intron 2 of 15) intron (NM_201284, intron 2 of 15) 32822 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 704-35 chr19 9756026 9756338 + 4 NA intron (NR_148544, intron 5 of 7) intron (NR_148544, intron 5 of 7) 12556 NM_001353799 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 1140-12 chr7 49567391 49567986 + 4 NA Intergenic L1PA16|LINE|L1 -205950 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 2372 chr5 46060248 46061552 + 4 NA Intergenic ALR/Alpha|Satellite|centr -364520 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 638-73 chr2 139666489 139666752 + 4 NA Intergenic Intergenic 769296 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 1199-14 chr4 94806358 94806793 + 4 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 48620 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 400-201 chr22 27230848 27231004 + 4 NA Intergenic L2a|LINE|L2 -6247 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 560-163 chr7 9512229 9512548 + 4 NA Intergenic L1ME1|LINE|L1 -121882 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 736-97 chrX 127199973 127200210 + 4 NA Intergenic L1PREC2|LINE|L1 380362 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 548-115 chr2 98112859 98113104 + 4 NA intron (NR_144297, intron 2 of 18) L1MEf|LINE|L1 25814 NM_144992 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 524-288 chrX 65947599 65947843 + 4 NA Intergenic L1MB5|LINE|L1 -71149 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 1228 chr11 114616306 114616907 + 4 NA Intergenic Intergenic -20820 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 474-81 chr14 59644690 59644854 + 4 NA intron (NM_021136, intron 3 of 8) L1PA8|LINE|L1 2248 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 796-37 chr4 59983844 59984173 + 4 NA Intergenic Intergenic -938611 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 621-23 chr12 20032506 20032742 + 4 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 17939 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 910-20 chr2 122898563 122898924 + 4 NA Intergenic Intergenic 174738 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 712-87 chr6 142530485 142530796 + 4 NA intron (NR_027311, intron 2 of 2) intron (NR_027311, intron 2 of 2) 107196 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 1280-6 chr7 71049712 71050462 + 4 NA Intergenic L1MA8|LINE|L1 -82057 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 1521-2 chr18 13874165 13874760 + 4 NA Intergenic MIR|SINE|MIR 41074 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 554-14 chr1 159239571 159239740 + 4 NA Intergenic Intergenic 34780 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 460-300 chr9 27897749 27897935 + 4 NA Intergenic Intergenic -323976 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 615-38 chr14 87854606 87855024 + 4 NA Intergenic L2c|LINE|L2 138367 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 1488-3 chr8 112078160 112078717 + 4 NA Intergenic L1PB3|LINE|L1 -565055 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 576-61 chr17 5725748 5726042 + 4 NA Intergenic L1MEc|LINE|L1 -46339 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 616-125 chr4 119562747 119562998 + 4 NA exon (NM_001083, exon 6 of 21) exon (NM_001083, exon 6 of 21) 64865 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 901-28 chr5 46182049 46182586 + 4 NA Intergenic ALR/Alpha|Satellite|centr -485937 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 933-2 chr10 22949434 22949876 + 4 NA intron (NM_001282745, intron 3 of 18) L1MEc|LINE|L1 21602 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 514-35 chr10 90017524 90017704 + 4 NA Intergenic L1MB1|LINE|L1 -60241 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 851-8 chr12 102303053 102303471 + 4 NA Intergenic L1ME1|LINE|L1 -105429 NM_002674 5367 Hs.707990 NM_002674 ENSG00000183395 PMCH MCH|ppMCH pro-melanin concentrating hormone protein-coding 684-12 chr10 16281323 16281642 + 4 NA Intergenic Intergenic -155461 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 1120-2 chr12 37281043 37281408 + 4 NA Intergenic ALR/Alpha|Satellite|centr -1035549 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 576-149 chr6 70743690 70744044 + 4 NA intron (NM_001044305, intron 2 of 10) intron (NM_001044305, intron 2 of 10) 75337 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 597-10 chr1 179024794 179025061 + 4 NA promoter-TSS (NM_014864) promoter-TSS (NM_014864) -877 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 1159-11 chr20 31157743 31158290 + 4 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -99648 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 1551 chr2 46731681 46732567 + 4 NA intron (NM_144949, intron 1 of 1) Tigger9b|DNA|TcMar-Tigger 32829 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 596-91 chr2 75998601 75998915 + 4 NA Intergenic L2b|LINE|L2 -287843 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 730-80 chr8 121360658 121360979 + 4 NA Intergenic L1MEb|LINE|L1 -278528 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 795-20 chr14 24734791 24735056 + 4 NA Intergenic Charlie19a|DNA|hAT-Charlie -100733 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 664-67 chr21 28639364 28639678 + 4 NA Intergenic L2c|LINE|L2 100203 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 791-54 chr5 12410680 12410972 + 4 NA Intergenic L1MA2|LINE|L1 -164031 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 703-102 chr8 138074447 138074772 + 4 NA intron (NR_161374, intron 1 of 7) MIRc|SINE|MIR 8936 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 618-44 chr17 31660345 31660573 + 4 NA Intergenic MIRb|SINE|MIR 85048 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 800-31 chr2 19627919 19628193 + 4 NA Intergenic L1M2|LINE|L1 -240798 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 708-46 chr3 44718691 44718973 + 4 NA intron (NM_001282880, intron 3 of 4) intron (NM_001282880, intron 3 of 4) 6172 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 1303-5 chr5 109230006 109230567 + 4 NA Intergenic Intergenic 96083 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 901-20 chr3 181026075 181026521 + 4 NA Intergenic L1M4|LINE|L1 -30382 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 571-107 chr3 86834185 86834403 + 4 NA Intergenic Intergenic 156855 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 752-57 chr4 144313817 144314165 + 4 NA Intergenic L1PBa|LINE|L1 -173273 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 487-33 chr10 6880014 6880185 + 4 NA Intergenic Intergenic 100501 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 720-17 chr11 55771161 55771392 + 4 NA Intergenic Intergenic -2162 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 640-142 chr8 139530984 139531249 + 4 NA Intergenic Intergenic 172007 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 588-9 chr10 20494456 20494611 + 4 NA Intergenic L1MCb|LINE|L1 -57437 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 1081-8 chr2 134528837 134529257 + 4 NA intron (NM_030923, intron 4 of 7) L1ME4a|LINE|L1 189953 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 645-116 chr7 88077067 88077383 + 4 NA intron (NM_001324421, intron 4 of 28) intron (NM_001324421, intron 4 of 28) -139435 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 1013-15 chr7 61932059 61932513 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1371770 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 555-95 chr2 79668465 79668612 + 4 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -19179 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 348-189 chr17 67070884 67070976 + 4 NA 3' UTR (NM_014877, exon 33 of 33) 3' UTR (NM_014877, exon 33 of 33) 26376 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 402-13 chr1 187090968 187091220 + 4 NA Intergenic LTR40a|LTR|ERVL -1748 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 673-21 chr11 42914859 42915086 + 4 NA Intergenic Intergenic 354397 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 650-69 chr21 22638232 22638497 + 4 NA Intergenic L1M1|LINE|L1 -440920 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 817-54 chrX 64640448 64640805 + 4 NA Intergenic L1PB4|LINE|L1 -245174 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 637-23 chr12 9139144 9139448 + 4 NA Intergenic L1MB1|LINE|L1 -23067 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 288-450 chr8 115246620 115246733 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 421337 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 460-61 chr12 27658961 27659151 + 4 NA intron (NM_003622, intron 10 of 29) intron (NM_003622, intron 10 of 29) -37391 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 648-3 chr1 104298081 104298403 + 4 NA Intergenic AluSx1|SINE|Alu 225219 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 837-41 chr8 78327917 78328295 + 4 NA Intergenic Intergenic -188234 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 827-32 chr3 85919506 85919957 + 4 NA intron (NM_001256502, intron 6 of 10) intron (NM_001256502, intron 6 of 10) -91681 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 425-29 chr10 19394816 19395016 + 4 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 333634 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 617-52 chr18 8912960 8913196 + 4 NA Intergenic Intergenic -189621 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 770-48 chr3 39571140 39571563 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR 69285 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 693-103 chr8 84671134 84671446 + 4 NA intron (NM_001354308, intron 3 of 9) THE1B-int|LTR|ERVL-MaLR -34637 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1105-13 chr8 46164356 46164831 + 4 NA Intergenic ALR/Alpha|Satellite|centr 453050 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 555-114 chr20 57765019 57765196 + 4 NA Intergenic L1MEf|LINE|L1 -53571 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 940-25 chr4 152043342 152043825 + 4 NA Intergenic L1MC5|LINE|L1 -57170 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 764-56 chr5 81060495 81060743 + 4 NA intron (NM_006909, intron 2 of 26) L2a|LINE|L2 -99712 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 613-62 chr2 117319881 117320092 + 4 NA Intergenic Intergenic -494705 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 373-380 chr7 49562795 49562933 + 4 NA Intergenic L1M5|LINE|L1 -210774 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 478-203 chr4 28728560 28728738 + 4 NA Intergenic L1PA16|LINE|L1 -90933 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 615-15 chr11 20561906 20562149 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR -37373 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 596-72 chr15 64352288 64352449 + 4 NA intron (NM_001329606, intron 1 of 11) intron (NM_001329606, intron 1 of 11) 3805 NM_001329605 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 1022-6 chr10 125953356 125953729 + 4 NA intron (NM_001363549, intron 1 of 10) intron (NM_001363549, intron 1 of 10) 19731 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 637-15 chr10 33727309 33727532 + 4 NA Intergenic AluJb|SINE|Alu 45260 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 696-115 chrX 54272066 54272299 + 4 NA intron (NM_001002838, intron 10 of 22) intron (NM_001002838, intron 10 of 22) 85823 NM_020922 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 416-223 chr3 68511748 68511940 + 4 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) 11207 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 488-133 chr2 59956166 59956462 + 4 NA Intergenic L1MA5A|LINE|L1 426722 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 747-39 chr2 211498148 211498469 + 4 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 880737 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 705-82 chr5 93978888 93979143 + 4 NA intron (NR_028080, intron 3 of 8) L1MA4A|LINE|L1 132648 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 313-253 chr2 59127553 59127659 + 4 NA Intergenic Intergenic -90102 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 720-62 chr4 61832521 61832804 + 4 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 329103 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 829-4 chr10 34083572 34083806 + 4 NA Intergenic L1ME1|LINE|L1 -311009 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 855-47 chr7 88794169 88794441 + 4 NA exon (NM_152706, exon 2 of 2) exon (NM_152706, exon 2 of 2) 1432 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 623-31 chr12 45347646 45347853 + 4 NA intron (NM_001025356, intron 4 of 19) intron (NM_001025356, intron 4 of 19) 55059 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 1027-14 chr5 35540864 35541224 + 4 NA Intergenic Intergenic -76819 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 828-45 chr7 2195749 2196136 + 4 NA intron (NM_001013837, intron 10 of 18) intron (NM_001013837, intron 10 of 18) 37003 NM_003550 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 694-88 chr3 101072992 101073331 + 4 NA Intergenic Intergenic -79671 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 389-8 chr1 67330679 67330797 + 4 NA non-coding (NR_047583, exon 7 of 14) non-coding (NR_047583, exon 7 of 14) 23374 NM_001559 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 604-15 chr10 44693856 44694008 + 4 NA Intergenic L1M5|LINE|L1 -217384 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 803-44 chr5 40407048 40407475 + 4 NA Intergenic Intergenic -272654 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 382-82 chr12 114339588 114339740 + 4 NA Intergenic Intergenic 66480 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 741-44 chr4 30298469 30298856 + 4 NA Intergenic Intergenic -421707 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 642-95 chr5 122255871 122256173 + 4 NA Intergenic L1PB3|LINE|L1 -55669 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 821-27 chr2 156980990 156981339 + 4 NA Intergenic L1MEi|LINE|L1 -276541 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 560-180 chr8 46325099 46325265 + 4 NA Intergenic ALR/Alpha|Satellite|centr 292461 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 776-49 chr6 17264461 17264754 + 4 NA Intergenic Intergenic -16754 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 930-27 chr5 124203515 124203909 + 4 NA intron (NR_125774, intron 4 of 5) THE1D-int|LTR|ERVL-MaLR 234808 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 645-17 chr11 81839635 81839916 + 4 NA Intergenic Intergenic 51061 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 758-60 chr4 179428292 179428518 + 4 NA Intergenic MER33|DNA|hAT-Charlie -1520469 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 757-63 chr9 32093466 32093666 + 4 NA Intergenic Intergenic -291037 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 684-121 chr8 115035097 115035396 + 4 NA Intergenic Intergenic 632767 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 611-152 chr8 129424689 129424955 + 4 NA intron (NR_130920, intron 1 of 3) L1M1|LINE|L1 59320 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 790-23 chr2 79907874 79908291 + 4 NA intron (NM_001282598, intron 6 of 17) intron (NM_001282598, intron 6 of 17) -41499 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 608-107 chr4 35495556 35495835 + 4 NA Intergenic Intergenic 748244 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 1641-3 chr8 74316477 74317115 + 4 NA intron (NM_020647, intron 1 of 5) intron (NM_020647, intron 1 of 5) 4565 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 488-92 chr15 72948905 72949161 + 4 NA Intergenic L1M2|LINE|L1 -103430 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 590-49 chr14 70366871 70367091 + 4 NA 3' UTR (NM_018373, exon 4 of 4) 3' UTR (NM_018373, exon 4 of 4) -7298 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 386-136 chr18 4863204 4863382 + 4 NA Intergenic L1ME4b|LINE|L1 -217889 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 877-17 chr2 213992049 213992368 + 4 NA intron (NR_047660, intron 11 of 14) MER20B|DNA|hAT-Charlie 234141 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 669-111 chr8 48718010 48718276 + 4 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 17125 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 795-25 chr18 67050197 67050517 + 4 NA Intergenic L1MD2|LINE|L1 -31227 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 505-69 chr13 20385800 20386002 + 4 NA Intergenic L1M5|LINE|L1 47945 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 738-9 chr11 34712884 34713090 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 80421 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 785-19 chr16 9857044 9857332 + 4 NA intron (NM_001134408, intron 4 of 13) L1MC3|LINE|L1 324879 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 974-6 chr19 24365315 24365735 + 4 NA Intergenic ALR/Alpha|Satellite|centr -202078 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 665-21 chr12 14125788 14125964 + 4 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -145520 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 776-32 chr22 45571339 45571728 + 4 NA intron (NM_006486, intron 14 of 16) L1MC5|LINE|L1 34114 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 570-121 chr2 238577141 238577368 + 4 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -21755 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 511-186 chr4 27814780 27815004 + 4 NA Intergenic AluSg|SINE|Alu 597413 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 852-9 chr11 19454413 19454859 + 4 NA intron (NM_001111018, intron 1 of 37) L2b|LINE|L2 52593 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 308-49 chr10 17808675 17808768 + 4 NA promoter-TSS (NM_002438) promoter-TSS (NM_002438) -627 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 558-11 chr1 169565269 169565484 + 4 NA intron (NM_000130, intron 3 of 24) L2c|LINE|L2 21155 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 1337-5 chr3 72224419 72224964 + 4 NA Intergenic L1M4b|LINE|L1 73434 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 754-19 chr14 58832992 58833280 + 4 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 4848 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 764-47 chr3 17268155 17268511 + 4 NA intron (NM_014744, intron 15 of 21) intron (NM_014744, intron 15 of 21) 335137 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 564-53 chr14 66409633 66409837 + 4 NA Intergenic L2a|LINE|L2 -76636 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 509-46 chr11 90511929 90512183 + 4 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 43801 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 692-10 chr10 66150748 66151016 + 4 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 579457 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 623-70 chr2 168607097 168607340 + 4 NA intron (NM_001256126, intron 3 of 10) MER58D|DNA|hAT-Charlie 24275 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 464-128 chr2 114257982 114258190 + 4 NA Intergenic Intergenic -184555 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 741-58 chr5 165534739 165535076 + 4 NA Intergenic Intergenic 1064628 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 550-101 chr19 31936078 31936290 + 4 NA Intergenic L1ME4a|LINE|L1 -89678 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 520-270 chr7 4342824 4343014 + 4 NA Intergenic Intergenic -208082 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 1018-29 chr6 58441141 58441598 + 4 NA Intergenic ALR/Alpha|Satellite|centr -479923 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 559-187 chr8 107991924 107992134 + 4 NA intron (NM_178565, intron 2 of 5) L1PA13|LINE|L1 89910 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 253-364 chr6 121336113 121336210 + 4 NA Intergenic (ATATTT)n|Simple_repeat|Simple_repeat -1432 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 723-83 chrX 65294933 65295291 + 4 NA Intergenic L1PBa|LINE|L1 -193623 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 598-26 chr11 26153020 26153282 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -35972 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 800-61 chr7 92937322 92937872 + 4 NA Intergenic L1MA7|LINE|L1 -100970 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 937-10 chr15 92331258 92331780 + 4 NA Intergenic Charlie15b|DNA|hAT-Charlie -62362 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 1864 chr10 110691700 110692711 + 4 NA intron (NM_001134363, intron 1 of 13) L1MB4|LINE|L1 47869 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 578-10 chr1 113564692 113564939 + 4 NA intron (NM_001142782, intron 2 of 20) intron (NM_001142782, intron 2 of 20) 174300 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 867-16 chr16 20566747 20567159 + 4 NA intron (NM_001105069, intron 1 of 13) (AT)n|Simple_repeat|Simple_repeat 9414 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 715-15 chr13 99763256 99763470 + 4 NA intron (NR_120421, intron 3 of 4) L1MA4|LINE|L1 -34362 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 937-4 chr11 37805519 37805814 + 4 NA Intergenic Intergenic -132935 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 637-31 chr12 88398401 88398573 + 4 NA Intergenic L1PB4|LINE|L1 181984 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 1100-13 chr5 8576863 8577547 + 4 NA Intergenic Intergenic 116280 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 702-107 chr8 138342940 138343144 + 4 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 154219 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 935-3 chr1 179899921 179900368 + 4 NA exon (NM_015602, exon 4 of 10) exon (NM_015602, exon 4 of 10) 18102 NM_001267578 26092 Hs.496459 NM_015602 ENSG00000143337 TOR1AIP1 LAP1|LAP1B|LGMD2Y torsin 1A interacting protein 1 protein-coding 570-82 chr16 73525255 73525425 + 4 NA Intergenic Intergenic 138535 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 591-146 chr6 496339 496494 + 4 NA intron (NM_018303, intron 25 of 27) L1MEf|LINE|L1 104664 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 514-260 chr7 10511900 10512050 + 4 NA intron (NR_147499, intron 2 of 2) L1M1|LINE|L1 -190701 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 342-485 chr7 49258628 49258751 + 4 NA Intergenic Intergenic 334142 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 857-8 chr10 21059348 21059793 + 4 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -114420 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 888-29 chr3 126560153 126560378 + 4 NA Intergenic L1MD1|LINE|L1 -1333 NR_130715 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 660-117 chr9 29932510 29932737 + 4 NA Intergenic Intergenic 475831 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 779-60 chrX 12608284 12608616 + 4 NA intron (NM_001368400, intron 1 of 15) intron (NM_001368400, intron 1 of 15) 109770 NM_001368400 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 731-33 chr16 75020037 75020308 + 4 NA intron (NM_032268, intron 1 of 4) L1ME3E|LINE|L1 21148 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 1087-10 chr22 19316645 19317136 + 4 NA Intergenic LTR76|LTR|ERV1 -25171 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 664-120 chr8 132558791 132559028 + 4 NA Intergenic L1M5|LINE|L1 2570 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 556-128 chr20 50176728 50176983 + 4 NA TTS (NR_109943) TTS (NR_109943) 4285 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 1307-5 chr2 126155627 126156403 + 4 NA Intergenic L1MC1|LINE|L1 -38030 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 706-49 chr3 118493741 118493994 + 4 NA Intergenic Intergenic -147901 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 1158-3 chr11 84171070 84171522 + 4 NA intron (NM_001142700, intron 1 of 19) L1PB4|LINE|L1 101984 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 750-72 chr8 133914614 133914880 + 4 NA Intergenic Intergenic 28251 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 661-16 chr11 116629898 116630209 + 4 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -9369 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 540-86 chr16 13281139 13281291 + 4 NA Intergenic Intergenic 379617 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 1087-12 chr3 179110634 179111158 + 4 NA intron (NR_125401, intron 2 of 2) intron (NR_125401, intron 2 of 2) 37077 NR_125401 101928739 Hs.434553 NR_125401 ENSG00000229102 LOC101928739 - uncharacterized LOC101928739 ncRNA 355-17 chr1 105996275 105996419 + 4 NA intron (NR_146609, intron 3 of 5) intron (NR_146609, intron 3 of 5) 31906 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 816-50 chr9 29779765 29780036 + 4 NA Intergenic HERVK14-int|LTR|ERVK -566299 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 956-21 chr4 64128135 64128661 + 4 NA Intergenic Intergenic 281052 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1269-4 chr12 34470850 34471375 + 4 NA Intergenic ALR/Alpha|Satellite|centr 448616 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 801-37 chr4 22533846 22534248 + 4 NA Intergenic MLT2B1|LTR|ERVL -17981 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 518-50 chr11 27938547 27938816 + 4 NA Intergenic MER20B|DNA|hAT-Charlie -118134 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 1093-7 chr2 59092945 59093421 + 4 NA Intergenic Intergenic -124525 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 729-55 chr4 445662 446040 + 4 NA intron (NM_133474, intron 2 of 2) L1MA6|LINE|L1 28358 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 1085-20 chr7 71588106 71588497 + 4 NA intron (NM_022479, intron 6 of 10) L1MC5a|LINE|L1 -280531 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 822-47 chr5 97654779 97655123 + 4 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 150255 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 1037-7 chr2 13693198 13693857 + 4 NA Intergenic Intergenic -686514 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 629-38 chr14 61124461 61124784 + 4 NA Intergenic Intergenic -142932 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 667-67 chr3 103307088 103307367 + 4 NA Intergenic Intergenic 216889 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 586-82 chr2 178190171 178190498 + 4 NA Intergenic Intergenic -4147 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 1139-6 chr21 25168958 25169602 + 4 NA Intergenic MLT2C1|LTR|ERVL 262421 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 334-515 chr8 11165840 11165934 + 4 NA intron (NR_138154, intron 1 of 2) intron (NR_138154, intron 1 of 2) 35479 NR_138154 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 813-41 chr7 80749946 80750275 + 4 NA intron (NM_006379, intron 16 of 17) intron (NM_006379, intron 16 of 17) 103457 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 495-145 chr22 28594638 28594814 + 4 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 85139 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 599-30 chr12 27462078 27462298 + 4 NA Intergenic Intergenic -4622 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 786-62 chr7 85812107 85812355 + 4 NA Intergenic Intergenic 391109 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 725-39 chr3 29430231 29430594 + 4 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 149100 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 1187-2 chr10 64884476 64885015 + 4 NA Intergenic Intergenic 39773 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 1188-2 chr11 81890058 81890481 + 4 NA TTS (NR_036186) TTS (NR_036186) 567 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 585-163 chr8 131121546 131121767 + 4 NA Intergenic Intergenic -80747 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 707-46 chr2 18287107 18287422 + 4 NA Intergenic Intergenic 273389 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 630-35 chr16 6342328 6342501 + 4 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 322711 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 412-328 chr8 78642020 78642238 + 4 NA Intergenic L1MA8|LINE|L1 -23960 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 412-21 chr10 20216129 20216291 + 4 NA intron (NM_032812, intron 10 of 13) intron (NM_032812, intron 10 of 13) -335760 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 751-58 chr5 31752801 31753166 + 4 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 113852 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 514-54 chr12 1377571 1377730 + 4 NA intron (NR_027948, intron 16 of 19) intron (NR_027948, intron 16 of 19) -122841 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 505-307 chr8 105973427 105973579 + 4 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 87000 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 628-78 chr2 222264193 222264498 + 4 NA intron (NM_181457, intron 4 of 7) L1MB5|LINE|L1 -33802 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 611-98 chr3 26210935 26211110 + 4 NA Intergenic L1PA15|LINE|L1 -337327 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 502-136 chr2 52781055 52781200 + 4 NA Intergenic Intergenic -78512 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 653-93 chr4 69950222 69950476 + 4 NA Intergenic MLT1K|LTR|ERVL-MaLR 10662 NM_001302770 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 1047-7 chr14 28044451 28044772 + 4 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -371390 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 578-75 chr18 39017071 39017297 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 604991 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 504-36 chr11 44041938 44042189 + 4 NA Intergenic L1M5|LINE|L1 -5918 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 952-27 chr8 116370779 116371247 + 4 NA Intergenic L1PA15-16|LINE|L1 -45954 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 416-145 chr17 69078649 69078848 + 4 NA TTS (NM_080284) TTS (NM_080284) -17821 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 599-96 chr4 42228619 42228782 + 4 NA Intergenic LTR33|LTR|ERVL -76045 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 1014-3 chr1 181828844 181829153 + 4 NA Intergenic L1M4c|LINE|L1 232714 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 627-54 chr2 68701744 68701931 + 4 NA Intergenic L1PA16|LINE|L1 -32974 NM_001166277 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 1054-13 chr5 30638454 30638951 + 4 NA Intergenic MER21-int|LTR|ERVL -554984 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1051-18 chr6 160284583 160285167 + 4 NA Intergenic L1ME1|LINE|L1 -26054 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 465-73 chr13 83190994 83191163 + 4 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 691315 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 540-173 chr5 45968115 45968329 + 4 NA Intergenic ALR/Alpha|Satellite|centr -271842 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 917-15 chr21 28798501 28798936 + 4 NA Intergenic Intergenic 86649 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 1085-4 chr12 132998486 132999052 + 4 NA intron (NM_001330514, intron 2 of 4) LTR49-int|LTR|ERV1 12402 NM_019591 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 784-60 chr8 52801349 52801628 + 4 NA Intergenic Intergenic -87022 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 501-28 chr10 90478657 90478850 + 4 NA intron (NR_110657, intron 2 of 6) L1M5|LINE|L1 62052 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 1153-3 chr10 106818580 106818915 + 4 NA intron (NM_001206569, intron 3 of 25) intron (NM_001206569, intron 3 of 25) 345959 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 683-48 chr21 45582752 45583103 + 4 NA Intergenic Intergenic -10727 NR_146912 105372840 Hs.406003 NR_146912 ENSG00000233922 LINC01694 - long intergenic non-protein coding RNA 1694 ncRNA 575-8 chr1 115411295 115411483 + 4 NA Intergenic Intergenic -73153 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 508-216 chr6 164520285 164520478 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 301682 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 620-30 chr13 49817299 49817536 + 4 NA Intergenic L1MC5a|LINE|L1 -24735 NM_002267 3839 Hs.527919 NM_002267 ENSG00000102753 KPNA3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 karyopherin subunit alpha 3 protein-coding 665-97 chr7 84556719 84556962 + 4 NA intron (NR_110079, intron 2 of 2) L1MB1|LINE|L1 24364 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 933-37 chr7 17266916 17267431 + 4 NA Intergenic L1M2|LINE|L1 -31479 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 686-29 chr17 68698173 68698416 + 4 NA Intergenic Intergenic 70140 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 779-37 chr22 36692547 36692929 + 4 NA intron (NM_006078, intron 1 of 3) L2a|LINE|L2 10120 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 548-102 chr19 53239481 53239743 + 4 NA intron (NM_001317998, intron 4 of 4) intron (NM_001317998, intron 4 of 4) 15238 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 817-27 chr20 46460670 46461060 + 4 NA Intergenic Intergenic -3222 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 960-35 chr6 55338543 55338924 + 4 NA intron (NM_207410, intron 3 of 8) intron (NM_207410, intron 3 of 8) 11264 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 572-103 chr20 24172283 24172611 + 4 NA Intergenic L1MD1|LINE|L1 -27320 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 1003-2 chr10 31597651 31598077 + 4 NA Intergenic Intergenic -198109 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 640-62 chr2 73486983 73487215 + 4 NA intron (NM_015120, intron 9 of 22) MER52A|LTR|ERV1 29996 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 2267 chr22 27341496 27342537 + 4 NA Intergenic L1ME1|LINE|L1 31365 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 496-59 chr12 91130531 91130679 + 4 NA Intergenic Intergenic -19111 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 842-6 chr10 39220803 39221087 + 4 NA Intergenic ALR/Alpha|Satellite|centr 524349 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 246-47 chr10 59234352 59234437 + 4 NA exon (NM_032439, exon 2 of 5) exon (NM_032439, exon 2 of 5) 56927 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 1145-7 chr4 62770909 62771495 + 4 NA Intergenic Intergenic -609437 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 736-33 chr19 37538630 37538958 + 4 NA 3' UTR (NM_001013659, exon 8 of 8) 3' UTR (NM_001013659, exon 8 of 8) -10155 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 578-26 chr10 41763505 41763727 + 4 NA Intergenic ALR/Alpha|Satellite|centr 604429 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1022-12 chr17 26642167 26642626 + 4 NA Intergenic ALR/Alpha|Satellite|centr 446845 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 472-38 chr10 105620942 105621119 + 4 NA Intergenic L1MC3|LINE|L1 199303 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 921-7 chr18 78852101 78852634 + 4 NA Intergenic L1MB1|LINE|L1 -127908 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 1097-10 chr3 20796403 20796793 + 4 NA Intergenic Intergenic 454130 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 630-103 chr5 8649669 8649898 + 4 NA Intergenic L2a|LINE|L2 188858 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 423-286 chr8 21398295 21398443 + 4 NA Intergenic L1ME3E|LINE|L1 100130 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 720-44 chr2 82397989 82398270 + 4 NA Intergenic L1M1|LINE|L1 -458674 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 1042-2 chr1 220574628 220575088 + 4 NA intron (NM_018650, intron 1 of 17) intron (NM_018650, intron 1 of 17) 46675 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 575-161 chr5 173182459 173182662 + 4 NA Intergenic Intergenic 38029 NM_013978 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 826-51 chr5 45825354 45825746 + 4 NA Intergenic Intergenic -129170 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1105-5 chr14 37833895 37834473 + 4 NA intron (NM_001368142, intron 11 of 12) L1MA4|LINE|L1 61801 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 695-7 chr1 220575317 220575583 + 4 NA intron (NM_018650, intron 1 of 17) intron (NM_018650, intron 1 of 17) 47267 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 773-20 chr20 47692925 47693225 + 4 NA intron (NM_198596, intron 4 of 20) intron (NM_198596, intron 4 of 20) 92989 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 942-23 chr21 25165485 25165842 + 4 NA Intergenic L1PA15|LINE|L1 266038 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 342-382 chr5 15689583 15689749 + 4 NA intron (NM_001278317, intron 2 of 3) MIR|SINE|MIR -74664 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 891-31 chr5 104254415 104254779 + 4 NA Intergenic L1M3c|LINE|L1 -691808 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 1023-23 chr8 117294840 117295379 + 4 NA Intergenic Intergenic 160114 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 454-270 chr6 46924669 46924825 + 4 NA intron (NM_015234, intron 1 of 20) L2a|LINE|L2 -2809 NM_001098518 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 640-144 chr9 88418488 88418661 + 4 NA intron (NM_006717, intron 1 of 5) intron (NM_006717, intron 1 of 5) 30130 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 898-12 chr16 71315951 71316302 + 4 NA Intergenic MIR|SINE|MIR -26404 NM_001324377 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 520-187 chr3 80839336 80839528 + 4 NA Intergenic Intergenic 68728 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 552-103 chr2 56393581 56393786 + 4 NA Intergenic L1M5|LINE|L1 -207913 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 570-80 chr16 54746522 54746770 + 4 NA Intergenic Intergenic 101587 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 827-54 chr8 78840065 78840280 + 4 NA non-coding (NR_157588, exon 1 of 1) non-coding (NR_157588, exon 1 of 1) 2643 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 1739 chr5 141258160 141259388 + 4 NA Intergenic L1MEf|LINE|L1 13379 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 1429-5 chr7 62807351 62807880 + 4 NA Intergenic ALR/Alpha|Satellite|centr 496441 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 619-105 chr5 141739037 141739309 + 4 NA Intergenic AluJb|SINE|Alu -56943 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 434-253 chr6 130675508 130675658 + 4 NA Intergenic Intergenic -151822 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 1282 chr11 80400334 80400880 + 4 NA Intergenic MIRb|SINE|MIR 362196 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 450-237 chr5 32870256 32870468 + 4 NA Intergenic Intergenic -77081 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 1159-3 chr16 11219333 11219761 + 4 NA Intergenic MIRb|SINE|MIR 36635 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 1296 chr11 83368552 83369253 + 4 NA Intergenic L1M4a1|LINE|L1 -82495 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 657-11 chr10 33588879 33589174 + 4 NA Intergenic L1ME1|LINE|L1 183654 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 594-18 chr10 82191832 82191995 + 4 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 41007 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 544-219 chr8 23888042 23888226 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -33328 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 692-76 chr5 24854470 24854681 + 4 NA Intergenic MER89-int|LTR|ERV1 -13992 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 689-39 chr16 76774873 76775218 + 4 NA Intergenic Intergenic -93891 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 1252-8 chr6 27359128 27359693 + 4 NA non-coding (NR_002722, exon 4 of 4) non-coding (NR_002722, exon 4 of 4) 12115 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 274-245 chr21 23765708 23765792 + 4 NA Intergenic Intergenic -380915 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 1320-7 chr19 57539647 57540229 + 4 NA 3' UTR (NM_153263, exon 3 of 3) 3' UTR (NM_153263, exon 3 of 3) 12582 NM_001199295 256051 Hs.744289 NM_153263 ENSG00000121406 ZNF549 - zinc finger protein 549 protein-coding 755-59 chr6 66134560 66134873 + 4 NA Intergenic Intergenic 346837 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 520-308 chr8 126218596 126218820 + 4 NA Intergenic LTR27B|LTR|ERV1 -106787 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 570-34 chr10 126348431 126348619 + 4 NA intron (NM_001288974, intron 1 of 18) intron (NM_001288974, intron 1 of 18) 39952 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 730-31 chr2 118890407 118890701 + 4 NA Intergenic L1M8|LINE|L1 -42371 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 938-7 chr14 63129838 63130235 + 4 NA Intergenic Intergenic -74407 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 712-20 chr12 2212818 2213159 + 4 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 10493 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 712-42 chr2 51416619 51416958 + 4 NA intron (NR_135237, intron 4 of 10) MER39B|LTR|ERV1 384187 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 441-256 chr8 49922825 49923050 + 4 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 11530 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 842-31 chr3 98432414 98432656 + 4 NA Intergenic Intergenic -36945 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 606-114 chr4 46654223 46654478 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 254895 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 1434-5 chr2 226452785 226453585 + 4 NA Intergenic L1ME1|LINE|L1 205608 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 610-108 chr22 48719868 48720074 + 4 NA intron (NM_001082967, intron 3 of 3) intron (NM_001082967, intron 3 of 3) -60324 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 701-13 chr12 16887896 16888178 + 4 NA Intergenic Intergenic -100710 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 683-34 chr19 43856547 43856867 + 4 NA Intergenic Intergenic 23429 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 615-91 chr4 23804726 23804929 + 4 NA intron (NM_001330752, intron 11 of 13) L2b|LINE|L2 76465 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 413-210 chr4 33306300 33306472 + 4 NA Intergenic LTR1B|LTR|ERV1 733507 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 903-43 chr9 10066753 10067142 + 4 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 267555 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 517-302 chrX 104937144 104937398 + 4 NA intron (NM_017416, intron 2 of 10) MLT1J2|LTR|ERVL-MaLR 283422 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 756-29 chr2 150990284 150990634 + 4 NA Intergenic L1MA5|LINE|L1 271404 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 585-59 chr17 74624070 74624312 + 4 NA promoter-TSS (NM_181449) promoter-TSS (NM_181449) -453 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 607-55 chr17 55520663 55520874 + 4 NA Intergenic Tigger7|DNA|TcMar-Tigger -98933 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 640-44 chr16 72674092 72674290 + 4 NA Intergenic L1MB4|LINE|L1 -9221 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 623-134 chr9 98395106 98395351 + 4 NA intron (NM_005458, intron 8 of 18) L2b|LINE|L2 -139579 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 464-252 chr8 55545787 55545929 + 4 NA Intergenic Intergenic -24880 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 960-18 chr19 52160330 52160883 + 4 NA intron (NM_001102657, intron 3 of 4) intron (NM_001102657, intron 3 of 4) 11015 NM_001102657 162962 Hs.631584 NM_001102657 ENSG00000196267 ZNF836 - zinc finger protein 836 protein-coding 1215 chr13 71998441 71999011 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -131522 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 645-86 chr4 32696755 32697252 + 4 NA Intergenic Intergenic 345965 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 577-70 chr16 6477498 6477778 + 4 NA intron (NM_018723, intron 2 of 15) Tigger1|DNA|TcMar-Tigger -296171 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 828-17 chr14 62084674 62084986 + 4 NA intron (NM_001367661, intron 8 of 8) MIRb|SINE|MIR -32527 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 476-44 chr11 23413078 23413255 + 4 NA Intergenic Intergenic 6024 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 720-23 chr12 5324388 5324676 + 4 NA Intergenic Intergenic -81381 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 619-132 chr8 139088977 139089243 + 4 NA Intergenic L1MA4A|LINE|L1 -175069 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 662-67 chr4 66050967 66051179 + 4 NA Intergenic Intergenic -225751 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 544-101 chr19 52544336 52544589 + 4 NA intron (NM_001363550, intron 2 of 2) AluSx4|SINE|Alu 16753 NM_001321424 388558 Hs.729294 NM_001039886 ENSG00000198482 ZNF808 - zinc finger protein 808 protein-coding 436-48 chr11 57428046 57428304 + 4 NA promoter-TSS (NM_017611) promoter-TSS (NM_017611) -595 NM_017611 29015 Hs.99962 NM_014096 ENSG00000134802 SLC43A3 EEG1|ENBT1|FOAP-13|PRO1659|SEEEG-1 solute carrier family 43 member 3 protein-coding 784-14 chr11 50177907 50178324 + 4 NA Intergenic (TTATATA)n|Simple_repeat|Simple_repeat 120347 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 689-84 chr5 156465884 156466202 + 4 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 138879 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 658-8 chr1 211302821 211303016 + 4 NA intron (NM_018254, intron 8 of 10) intron (NM_018254, intron 8 of 10) -23697 NM_004619 7188 Hs.523930 NM_004619 ENSG00000082512 TRAF5 MGC:39780|RNF84 TNF receptor associated factor 5 protein-coding 705-76 chr4 77255349 77255570 + 4 NA Intergenic Intergenic 98252 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 541-248 chr8 136134908 136135083 + 4 NA Intergenic Intergenic -395803 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 461-169 chr3 45302723 45302906 + 4 NA Intergenic L1M4b|LINE|L1 -76527 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 665-34 chr14 68711658 68711912 + 4 NA Intergenic Intergenic 82129 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 891-20 chr2 89778148 89778699 + 4 NA Intergenic Intergenic -140516 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 1260-4 chr22 43639593 43640316 + 4 NA intron (NM_198856, intron 15 of 29) L1MEf|LINE|L1 123700 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 338-67 chr10 75299474 75299650 + 4 NA intron (NR_038226, intron 2 of 3) L1M4a2|LINE|L1 3179 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 741-29 chr2 39901484 39901713 + 4 NA Intergenic LTR79|LTR|ERVL -16036 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 1438-3 chr7 29254388 29255266 + 4 NA intron (NM_001293072, intron 1 of 12) LTR67B|LTR|ERVL -45857 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 444-87 chr16 60987226 60987361 + 4 NA Intergenic Intergenic 68473 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 658-97 chr5 56432682 56432862 + 4 NA Intergenic Intergenic 48997 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 1347-5 chr8 108957711 108958205 + 4 NA Intergenic L1MEc|LINE|L1 -128670 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 649-74 chr3 174626951 174627234 + 4 NA Intergenic Intergenic -232242 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 303-393 chr6 44189840 44189941 + 4 NA Intergenic AluJo|SINE|Alu -27036 NM_001347931 101929726 Hs.438979 NM_001315494 ENSG00000262179 MYMX MINION|hMINION myomixer, myoblast fusion factor protein-coding 857-44 chr5 3696822 3697180 + 4 NA Intergenic L1MEj|LINE|L1 101169 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 1003-6 chr11 99725423 99725863 + 4 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 169498 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 732-75 chr5 89805435 89805855 + 4 NA Intergenic L1PA6|LINE|L1 211075 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 498-45 chr11 24046947 24047197 + 4 NA Intergenic MIR|SINE|MIR -449981 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 1363-2 chr3 42915704 42916281 + 4 NA 3' UTR (NM_001134656, exon 4 of 4) 3' UTR (NM_001134656, exon 4 of 4) 9850 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 618-108 chr6 67674431 67674664 + 4 NA Intergenic MER41-int|LTR|ERV1 -380804 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 704-80 chr7 84400929 84401161 + 4 NA Intergenic L1MA4|LINE|L1 -131431 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 633-54 chr19 27455377 27455586 + 4 NA Intergenic ALR/Alpha|Satellite|centr -337950 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 595-87 chr2 125237004 125237316 + 4 NA Intergenic Intergenic 880825 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 595-104 chr3 223203 223481 + 4 NA intron (NR_045572, intron 1 of 2) intron (NR_045572, intron 1 of 2) 25453 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 575-155 chr5 130314790 130315006 + 4 NA Intergenic L1MEg|LINE|L1 410433 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 2114 chr19 53212605 53213525 + 4 NA non-coding (NR_073396, exon 1 of 1) non-coding (NR_073396, exon 1 of 1) 117 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 476-182 chr3 127191474 127191675 + 4 NA Intergenic L1MEi|LINE|L1 -1557 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 690-10 chr10 107176756 107177030 + 4 NA Intergenic L1ME3|LINE|L1 -12187 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 639-5 chr1 117770527 117770755 + 4 NA Intergenic L1M3a|LINE|L1 158980 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 897-7 chr10 56180352 56180892 + 4 NA Intergenic Intergenic 180637 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 965-16 chr4 10320847 10321202 + 4 NA Intergenic Intergenic 136402 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 572-166 chr8 2893289 2893630 + 4 NA Intergenic AluSz6|SINE|Alu -165008 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 528-60 chr12 44736848 44737048 + 4 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 138713 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 568-90 chr19 24340291 24340505 + 4 NA Intergenic ALR/Alpha|Satellite|centr -176951 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 596-5 chr1 63684415 63684644 + 4 NA Intergenic Intergenic 61313 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 942-21 chr20 52086846 52087233 + 4 NA intron (NM_199427, intron 8 of 8) HAL1ME|LINE|L1 18445 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 459-173 chr3 1861526 1861732 + 4 NA Intergenic L2b|LINE|L2 -237174 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 1154-4 chr14 60610369 60610864 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -28600 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 491-125 chr2 107351924 107352114 + 4 NA Intergenic L1PA17|LINE|L1 -2494 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 773-6 chr11 97639653 97639890 + 4 NA Intergenic Intergenic 1131346 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 571-35 chr12 34539177 34539434 + 4 NA Intergenic ALR/Alpha|Satellite|centr 516809 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1048-27 chr9 29370000 29370451 + 4 NA Intergenic L1M4a1|LINE|L1 -156624 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 841-32 chr5 104155884 104156139 + 4 NA Intergenic Intergenic -593222 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 628-55 chr16 64139827 64140061 + 4 NA Intergenic L1ME1|LINE|L1 982119 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 511-259 chr8 82779021 82779221 + 4 NA Intergenic L1ME1|LINE|L1 -132983 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 876-16 chr16 50915541 50915784 + 4 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 36889 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 833-5 chr12 60816084 60816437 + 4 NA Intergenic Intergenic 1126890 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 379-267 chr5 80696276 80696416 + 4 NA intron (NM_002439, intron 8 of 23) L1MDa|LINE|L1 -41363 NM_000791 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 694-104 chr5 77745726 77745910 + 4 NA intron (NM_004607, intron 1 of 3) intron (NM_004607, intron 1 of 3) 30521 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 1274-6 chr8 131704050 131704703 + 4 NA Intergenic MIRb|SINE|MIR -199717 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 833-22 chr3 67082024 67082464 + 4 NA Intergenic Intergenic 83937 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 628-125 chr7 116684588 116684850 + 4 NA intron (NM_001324402, intron 1 of 19) L2c|LINE|L2 12523 NM_001324401 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 934-19 chr21 39947946 39948387 + 4 NA Intergenic L1ME1|LINE|L1 80728 NM_006198 5121 Hs.80296 NM_006198 ENSG00000183036 PCP4 PEP-19 Purkinje cell protein 4 protein-coding 862 chr1 229983051 229983482 + 4 NA Intergenic Intergenic -19451 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 743-38 chr2 106290880 106291286 + 4 NA Intergenic L1MC4|LINE|L1 -78662 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 1208-11 chr20 48085660 48086212 + 4 NA Intergenic L1ME1|LINE|L1 -95819 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 280-6 chr1 69032073 69032176 + 4 NA Intergenic L1MA4A|LINE|L1 -23774 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 588-164 chr8 118971780 118971959 + 4 NA intron (NM_001324095, intron 1 of 7) MIR|SINE|MIR 19606 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 494-129 chr2 78421313 78421482 + 4 NA Intergenic L1MC3|LINE|L1 -124134 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 748-47 chr2 16070897 16071123 + 4 NA intron (NR_126559, intron 1 of 3) MER5A1|DNA|hAT-Charlie 20583 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 664-106 chr7 43745486 43745808 + 4 NA Intergenic AluSz|SINE|Alu -13026 NM_001253823 644 Hs.488143 NM_000712 ENSG00000106605 BLVRA BLVR|BVR|BVRA biliverdin reductase A protein-coding 654-13 chr10 19535374 19535544 + 4 NA intron (NM_001142308, intron 32 of 39) (TA)n|Simple_repeat|Simple_repeat 193091 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 493-64 chr12 119550310 119550530 + 4 NA Intergenic MIR1_Amn|SINE|MIR -43354 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 583-24 chr10 121007885 121008145 + 4 NA Intergenic MER63D|DNA|hAT-Blackjack 156653 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 636-165 chrX 67024412 67024676 + 4 NA Intergenic L1PA13|LINE|L1 -385246 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 797-4 chr10 14660412 14660714 + 4 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -56162 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 567-88 chr2 120660023 120660350 + 4 NA Intergenic Intergenic -75682 NM_001371271 1167-7 chr14 84339951 84340500 + 4 NA Intergenic MLT2B4|LTR|ERVL -931707 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 782-23 chr15 34883703 34884084 + 4 NA intron (NM_014691, intron 26 of 34) ERVL-E-int|LTR|ERVL 85849 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 564-106 chr2 167915557 167915820 + 4 NA intron (NR_131227, intron 1 of 4) MER5A|DNA|hAT-Charlie 25456 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 724-10 chr11 103722670 103722875 + 4 NA Intergenic L1PB|LINE|L1 -127134 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 491-173 chr3 104978275 104978445 + 4 NA Intergenic Intergenic -388353 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 551-58 chr14 84348959 84349177 + 4 NA Intergenic MER44B|DNA|TcMar-Tigger -922864 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 622-117 chr6 76547369 76547591 + 4 NA intron (NR_149101, intron 2 of 2) L1MC2|LINE|L1 46143 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 898-10 chr15 91735238 91735676 + 4 NA Intergenic L1MD3|LINE|L1 -118251 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 1162-5 chr2 63207665 63208202 + 4 NA intron (NR_148705, intron 13 of 16) L1M8|LINE|L1 -88391 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 394-18 chr1 115740565 115740676 + 4 NA intron (NM_001232, intron 3 of 10) intron (NM_001232, intron 3 of 10) 28185 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 796-46 chr5 104022651 104022881 + 4 NA Intergenic MIRb|SINE|MIR -459977 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 834-49 chr8 82993168 82993420 + 4 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 81190 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 999-4 chr12 20999956 21000333 + 4 NA intron (NM_001371097, intron 13 of 15) L1PBb|LINE|L1 -15552 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 665 chr1 45195935 45196219 + 4 NA intron (NM_020883, intron 1 of 13) AluJb|SINE|Alu 10528 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 528-162 chr3 107406324 107406558 + 4 NA Intergenic Intergenic -24282 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 640-17 chr10 88107493 88107657 + 4 NA Intergenic MER5B|DNA|hAT-Charlie 243950 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 381-413 chrX 5025094 5025297 + 4 NA Intergenic L1MEg|LINE|L1 -391623 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 1022-3 chr1 183426008 183426439 + 4 NA Intergenic Intergenic -7843 NM_015039 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 471-157 chr21 32049396 32049631 + 4 NA Intergenic MIR|SINE|MIR 36782 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 867-6 chr1 179426256 179426725 + 4 NA intron (NR_073544, intron 12 of 25) L1ME3G|LINE|L1 60446 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 487-127 chr19 56612606 56612948 + 4 NA intron (NR_163263, intron 2 of 4) L1PB3|LINE|L1 17475 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 345-347 chr3 53520655 53520855 + 4 NA intron (NM_001128840, intron 3 of 47) AluSx1|SINE|Alu 26144 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 832-44 chr8 130965165 130965588 + 4 NA intron (NM_001115, intron 2 of 17) L1PA16|LINE|L1 75533 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 737-81 chr8 32418857 32419225 + 4 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -21705 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 914-28 chr7 45263457 45263863 + 4 NA Intergenic L1M5|LINE|L1 105869 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 606-115 chr4 53465919 53466278 + 4 NA intron (NM_001126328, intron 9 of 10) Charlie10|DNA|hAT-Charlie -33979 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 826-42 chr3 59476193 59476701 + 4 NA Intergenic Intergenic 182050 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 1154-2 chr10 39150254 39150763 + 4 NA Intergenic ALR/Alpha|Satellite|centr 453912 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1119-5 chr22 48727213 48727640 + 4 NA intron (NM_001082967, intron 3 of 3) intron (NM_001082967, intron 3 of 3) -52869 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 978-10 chr2 4601353 4601703 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 54694 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 612-71 chr2 154099085 154099243 + 4 NA intron (NM_052917, intron 3 of 12) L1PB4|LINE|L1 154770 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 530-134 chr2 115485708 115485955 + 4 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 142016 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 727-89 chr9 31689116 31689367 + 4 NA Intergenic Intergenic -307751 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 630-37 chr16 59424160 59424356 + 4 NA Intergenic Intergenic 330933 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 628-128 chr8 49649659 49649958 + 4 NA Intergenic LTR12D|LTR|ERV1 -137628 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 587-47 chr14 72523791 72523974 + 4 NA intron (NM_001370288, intron 15 of 16) intron (NM_001370288, intron 15 of 16) 7062 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 1350 chr11 22989887 22990625 + 4 NA Intergenic Intergenic -129782 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 232-348 chr7 33683288 33683360 + 4 NA Intergenic Intergenic -221591 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 658-136 chr9 117625587 117625830 + 4 NA Intergenic Intergenic -22898 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 1348-2 chr11 3176823 3177439 + 4 NA Intergenic L1ME1|LINE|L1 -11821 NM_020896 114879 Hs.436166 NM_020896 ENSG00000021762 OSBPL5 OBPH1|ORP5 oxysterol binding protein like 5 protein-coding 731-21 chr12 14291018 14291314 + 4 NA Intergenic LTR37-int|LTR|ERV1 -74466 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 670-102 chr6 57254940 57255165 + 4 NA Intergenic PABL_A|LTR|ERV1 8294 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 1107-11 chr8 121104085 121104537 + 4 NA Intergenic Intergenic -292265 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 1024-14 chr2 129127423 129127777 + 4 NA Intergenic Intergenic 146291 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 936-19 chr20 39542621 39543174 + 4 NA Intergenic L2c|LINE|L2 -318149 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 958-14 chr19 29139288 29139631 + 4 NA Intergenic LTR8B|LTR|ERV1 73692 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 761-54 chr5 29586522 29586843 + 4 NA Intergenic Intergenic -190706 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 610-69 chr17 63288416 63288587 + 4 NA intron (NM_025185, intron 8 of 25) L1MCa|LINE|L1 151766 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 385-236 chr3 22948988 22949181 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR 253494 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 621-13 chr10 10840249 10840553 + 4 NA intron (NM_001326327, intron 1 of 14) L1MC3|LINE|L1 41676 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 469-263 chr7 43013571 43013781 + 4 NA Intergenic Intergenic 81300 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 1375-5 chr19 44475908 44476620 + 4 NA 3' UTR (NM_001288762, exon 4 of 4) 3' UTR (NM_001288762, exon 4 of 4) 24258 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 570-26 chr10 63905132 63905366 + 4 NA Intergenic Intergenic -383359 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 572-18 chr10 75550906 75551144 + 4 NA intron (NM_001305581, intron 2 of 6) L1MCc|LINE|L1 -1433 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 474-98 chr16 6498298 6498549 + 4 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -275386 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 557-136 chr3 68708163 68708393 + 4 NA Intergenic L1MB7|LINE|L1 207641 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 786-34 chr20 37180456 37180798 + 4 NA intron (NM_001135771, intron 1 of 16) intron (NM_001135771, intron 1 of 16) -1079 NM_213631 140699 Hs.349125 NM_152503 ENSG00000101353 MROH8 C20orf131|C20orf132 maestro heat like repeat family member 8 protein-coding 1085-5 chr14 45540600 45541193 + 4 NA Intergenic L1MA3|LINE|L1 174706 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 594-66 chr2 31346240 31346441 + 4 NA intron (NM_000379, intron 30 of 35) intron (NM_000379, intron 30 of 35) 68402 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 868-3 chr11 42493012 42493272 + 4 NA Intergenic Intergenic -239452 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 586-14 chr1 213438474 213438661 + 4 NA Intergenic L1MEg|LINE|L1 387326 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 447-222 chr5 148516047 148516194 + 4 NA intron (NM_001040172, intron 4 of 5) intron (NM_001040172, intron 4 of 5) 120941 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 655-89 chr4 85054341 85054539 + 4 NA Intergenic Intergenic 86956 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 880-25 chr22 26665264 26665773 + 4 NA non-coding (NR_003491, exon 3 of 5) non-coding (NR_003491, exon 3 of 5) -7325 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 1071-8 chr19 44249181 44249571 + 4 NA Intergenic Intergenic -10504 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 588-172 chrX 39045026 39045195 + 4 NA Intergenic Intergenic -241227 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 626-143 chr8 120200072 120200255 + 4 NA intron (NM_021110, intron 8 of 47) intron (NM_021110, intron 8 of 47) 75061 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 862-12 chr12 129964262 129964667 + 4 NA Intergenic Intergenic -60439 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 763-24 chr19 19132039 19132343 + 4 NA intron (NM_017814, intron 5 of 11) MLT1G3|LTR|ERVL-MaLR 6287 NM_001256766 54929 Hs.631629 NM_017814 ENSG00000064545 TMEM161A AROS-29 transmembrane protein 161A protein-coding 684-24 chr12 2429008 2429260 + 4 NA intron (NM_199460, intron 3 of 49).2 MLT1C|LTR|ERVL-MaLR 159358 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 620-42 chr15 70510466 70510760 + 4 NA Intergenic L1PA16|LINE|L1 -4685 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 1252-9 chr8 35982319 35982718 + 4 NA Intergenic Intergenic -272198 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 818-64 chr9 91171437 91171775 + 4 NA intron (NR_135306, intron 2 of 2) L1PB4|LINE|L1 52544 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 629-85 chr3 191766279 191766639 + 4 NA Intergenic Intergenic 305296 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 600-104 chr5 127892601 127892848 + 4 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 189335 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 1125-4 chr16 75169483 75169946 + 4 NA exon (NM_153688, exon 4 of 4) exon (NM_153688, exon 4 of 4) 20663 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 674-110 chrX 45648846 45649174 + 4 NA Intergenic MamRep605|LTR?|LTR? -82078 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 597-86 chr21 27268746 27269089 + 4 NA Intergenic Intergenic -301829 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 1048-11 chr16 58301440 58302063 + 4 NA Intergenic L1MA8|LINE|L1 -6704 NM_001080492 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 954-40 chr5 90769657 90770198 + 4 NA intron (NR_003149, intron 59 of 89) intron (NR_003149, intron 59 of 89) 211130 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 1120-10 chr5 133378347 133378916 + 4 NA intron (NM_015082, intron 4 of 15) L1M4b|LINE|L1 49075 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 654-69 chr2 129599559 129599735 + 4 NA Intergenic L1PA10|LINE|L1 277844 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 873-15 chr2 22273412 22273851 + 4 NA Intergenic Intergenic -262848 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 1244-7 chr5 9865669 9866255 + 4 NA intron (NR_027112, intron 4 of 12) L1MEg|LINE|L1 11585 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 1641-4 chr8 117495861 117496775 + 4 NA Intergenic L1PA14|LINE|L1 -24395 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 717-88 chr8 139873188 139873502 + 4 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -170222 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1045-5 chr16 9455693 9456140 + 4 NA promoter-TSS (NR_126349) promoter-TSS (NR_126349) -411 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 791-51 chr4 30371770 30372142 + 4 NA Intergenic L1MA9|LINE|L1 -348413 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 652-61 chr2 28009978 28010201 + 4 NA intron (NM_199193, intron 5 of 13) intron (NM_199193, intron 5 of 13) 13722 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 550-140 chr21 31483835 31484065 + 4 NA intron (NM_003253, intron 1 of 28) MLT1A0|LTR|ERVL-MaLR 75137 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 622-30 chr14 66676756 66677019 + 4 NA intron (NM_001024218, intron 1 of 21) L1MA5|LINE|L1 169480 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 623-95 chr4 103825282 103825476 + 4 NA Intergenic Intergenic -105394 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 655-52 chr2 14487768 14487952 + 4 NA Intergenic Intergenic -86902 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 653-83 chr3 21272254 21272649 + 4 NA Intergenic Intergenic -133275 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 509-241 chr8 4410281 4410527 + 4 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 584510 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 404-323 chr8 111948920 111949067 + 4 NA Intergenic Intergenic 572354 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 671-37 chr16 82428483 82428848 + 4 NA Intergenic MER58A|DNA|hAT-Charlie -198304 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 839-42 chr5 156602377 156602780 + 4 NA intron (NM_001128209, intron 5 of 7) L1MA6|LINE|L1 -247717 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 726-47 chr21 30327501 30327697 + 4 NA Intergenic MER2|DNA|TcMar-Tigger -7284 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 900-38 chr7 33371523 33371980 + 4 NA intron (NM_198428, intron 17 of 22) intron (NM_198428, intron 17 of 22) 242187 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 370-152 chr14 96104385 96104568 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR 65114 NM_001252507 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 414-82 chr14 51951688 51951843 + 4 NA intron (NM_001243773, intron 3 of 3) MER58A|DNA|hAT-Charlie -33194 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 802-16 chr13 23334433 23334806 + 4 NA exon (NM_001278055, exon 8 of 8) exon (NM_001278055, exon 8 of 8) 40889 NM_001278055 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 885-23 chr6 21295343 21295582 + 4 NA Intergenic Intergenic 216430 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 943-18 chr20 58052387 58052864 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 48721 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 486-159 chr2 165211359 165211533 + 4 NA Intergenic Intergenic -7396 NM_006922 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 944-10 chr17 71898641 71899156 + 4 NA Intergenic Intergenic 127081 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 1567-2 chr2 102384972 102385814 + 4 NA intron (NM_003855, intron 7 of 10) intron (NM_003855, intron 7 of 10) 29110 NM_003855 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 824-22 chr2 134754639 134754972 + 4 NA Intergenic L1MA4|LINE|L1 -35805 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 620-17 chr10 81665153 81665429 + 4 NA Intergenic Intergenic -209903 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 486-61 chr12 60957764 60957994 + 4 NA Intergenic Intergenic 1234960 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 468-220 chr4 37511221 37511402 + 4 NA intron (NM_001104629, intron 1 of 3) L1M1|LINE|L1 57386 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 565-125 chr3 165019795 165020131 + 4 NA intron (NM_001041, intron 27 of 47) (AATAT)n|Simple_repeat|Simple_repeat 58533 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 803-10 chr12 131000643 131001075 + 4 NA intron (NM_198827, intron 9 of 24) intron (NM_198827, intron 9 of 24) -6883 NR_131951 105755954 Hs.677534 NR_131950 ADGRD1-AS1 LACAT8 ADGRD1 antisense RNA 1 ncRNA 478-217 chr4 120801505 120801660 + 4 NA intron (NM_001300824, intron 7 of 13) intron (NM_001300824, intron 7 of 13) 121284 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 631-21 chr10 78664362 78664589 + 4 NA Intergenic MIR3|SINE|MIR 397133 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 693-21 chr12 9129261 9129522 + 4 NA Intergenic Intergenic -13162 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 669-45 chr19 12497245 12497435 + 4 NA Intergenic Intergenic -12524 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 820-7 chr10 98609200 98609600 + 4 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -162437 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 1049-9 chr18 14027525 14028026 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 104660 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 1008-15 chr4 95997135 95997535 + 4 NA Intergenic Intergenic 157242 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 802-6 chr10 16285092 16285437 + 4 NA Intergenic AluJb|SINE|Alu -151679 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 769-55 chr5 127114109 127114392 + 4 NA Intergenic Intergenic -40758 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 894-39 chr5 179031866 179032319 + 4 NA intron (NM_001353372, intron 4 of 4) intron (NM_001353372, intron 4 of 4) 8288 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 581-7 chr10 6976936 6977194 + 4 NA Intergenic Intergenic 197467 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 625-24 chr12 31358870 31359091 + 4 NA Intergenic Intergenic 10321 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 954-10 chr12 83856811 83857254 + 4 NA Intergenic L1M2|LINE|L1 1055767 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 763-62 chr8 59866019 59866511 + 4 NA Intergenic Intergenic 415135 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 1152-7 chr4 129056185 129056650 + 4 NA intron (NM_001300898, intron 2 of 5) L1M2a|LINE|L1 37122 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 665-49 chr2 46205577 46205927 + 4 NA Intergenic Intergenic -91655 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 604-127 chr5 25537597 25537999 + 4 NA Intergenic Intergenic 346845 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 548-110 chr2 34310169 34310392 + 4 NA Intergenic Intergenic 243054 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 669-4 chr1 61154341 61154572 + 4 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 71895 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 669-41 chr18 1047100 1047292 + 4 NA Intergenic Intergenic -119203 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 906-15 chr12 43912691 43913146 + 4 NA intron (NM_001286213, intron 2 of 6) MARNA|DNA|TcMar-Mariner 76837 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 892-13 chr12 10455820 10456316 + 4 NA Intergenic L1M3a|LINE|L1 -1383 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 3073 chr9 132697216 132698795 + 4 NA Intergenic MER65A|LTR|ERV1 27541 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 1034-6 chr10 36827140 36827585 + 4 NA Intergenic Intergenic -298495 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 717-54 chr3 34191460 34191684 + 4 NA Intergenic Intergenic 392942 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 543-251 chr8 124695003 124695168 + 4 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 33388 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 738-19 chr15 52946866 52947091 + 4 NA Intergenic Intergenic -156642 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 480-122 chr18 21162596 21162727 + 4 NA Intergenic Intergenic -50848 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 987-11 chr4 187745402 187745926 + 4 NA Intergenic Intergenic -73023 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 598-107 chr5 44472257 44472443 + 4 NA Intergenic LTR49-int|LTR|ERV1 37932 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 537-166 chr4 35349599 35349782 + 4 NA Intergenic L1PA12|LINE|L1 894249 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 548-112 chr2 50028385 50028665 + 4 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -54322 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 981-18 chr21 20317522 20317973 + 4 NA Intergenic L1MEf|LINE|L1 -59062 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 621-127 chr8 87222013 87222177 + 4 NA intron (NM_173538, intron 5 of 10) L4_C_Mam|LINE|RTE-X 355680 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1171-6 chr15 87998319 87998839 + 4 NA intron (NM_001007156, intron 14 of 15) intron (NM_001007156, intron 14 of 15) -52311 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 446-229 chr5 6943551 6943712 + 4 NA Intergenic Intergenic -115710 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 516-109 chr19 15718569 15718732 + 4 NA Intergenic Intergenic -9374 NM_013939 26538 Hs.247694 NM_013939 ENSG00000171942 OR10H2 - olfactory receptor family 10 subfamily H member 2 protein-coding 768-35 chr4 10262998 10263377 + 4 NA Intergenic Intergenic -146388 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 586-71 chr2 45831078 45831327 + 4 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 179527 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 750-24 chr18 3207135 3207341 + 4 NA intron (NM_019856, intron 2 of 36) intron (NM_019856, intron 2 of 36) 12730 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 550-64 chr13 74774383 74774545 + 4 NA Intergenic MER4CL34|LTR|ERV1 221621 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 515-43 chr11 55735862 55736057 + 4 NA Intergenic MLT1F2|LTR|ERVL-MaLR -37479 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 534-131 chr2 147491681 147491844 + 4 NA Intergenic Intergenic -352755 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 619-28 chr11 50426932 50427245 + 4 NA Intergenic ALR/Alpha|Satellite|centr 17941 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 325-380 chr4 23582340 23582496 + 4 NA Intergenic Intergenic 298874 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 984-4 chr14 66322337 66322845 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -163780 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 783-13 chr10 66248515 66248825 + 4 NA intron (NM_001127384, intron 13 of 17) L1MA2|LINE|L1 677245 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 827-11 chr13 27320941 27321341 + 4 NA Intergenic Intergenic 49964 NM_001331126 387496 Hs.192131 NM_206827 ENSG00000122035 RASL11A - RAS like family 11 member A protein-coding 731-63 chr6 130654053 130654402 + 4 NA Intergenic Intergenic -173178 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 581-167 chr8 69311724 69311976 + 4 NA Intergenic Intergenic 136394 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 580-116 chr3 96658696 96658848 + 4 NA Intergenic Intergenic -155822 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 1163-10 chr3 76213163 76213642 + 4 NA Intergenic Intergenic -427853 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 1171-5 chr15 57888056 57888557 + 4 NA Intergenic Intergenic 125717 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 422-320 chrX 104772644 104772781 + 4 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 206513 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 571-118 chr3 180317079 180317369 + 4 NA Intergenic LTR33A|LTR|ERVL -96949 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 736-41 chr2 156728758 156729022 + 4 NA Intergenic Intergenic 292511 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 761-72 chr8 52809975 52810322 + 4 NA Intergenic L1ME1|LINE|L1 -95682 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 1006-21 chr4 8715166 8715626 + 4 NA Intergenic L1MEc|LINE|L1 122631 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 652 chr1 33707810 33708071 + 4 NA intron (NM_052896, intron 22 of 69) intron (NM_052896, intron 22 of 69) -152535 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 793-14 chr12 117971163 117971490 + 4 NA Intergenic L1MEg|LINE|L1 -2336 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 925-26 chr5 26328839 26329142 + 4 NA Intergenic Intergenic 709596 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 636-50 chr15 25171389 25171565 + 4 NA TTS (NR_001291) TTS (NR_001291) 754 NR_001291 338433 NR_001291 ENSG00000201831 SNORD115-1 HBII-52-1|RNHBII52 small nucleolar RNA, C/D box 115-1 snoRNA 839-27 chr21 27516183 27516498 + 4 NA Intergenic Intergenic -206039 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 374-154 chr18 13958728 13958838 + 4 NA Intergenic L1M4a1|LINE|L1 -43076 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 543-149 chr20 32313440 32313626 + 4 NA intron (NM_004798, intron 2 of 8) intron (NM_004798, intron 2 of 8) 35882 NM_004798 9371 Hs.369670 NM_004798 ENSG00000101350 KIF3B FLA8|HH0048|KLP-11 kinesin family member 3B protein-coding 913-17 chr19 9758609 9758976 + 4 NA intron (NM_001353798, intron 4 of 4) intron (NM_001353798, intron 4 of 4) 9946 NM_001353799 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 605-116 chr7 133189023 133189276 + 4 NA Intergenic MLT1L|LTR|ERVL-MaLR -63918 NM_001037126 60412 Hs.321273 NM_021807 ENSG00000131558 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 881-25 chr22 25855676 25856113 + 4 NA intron (NM_001318245, intron 21 of 43) L1PA15|LINE|L1 113706 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 757-58 chr7 64521898 64522278 + 4 NA exon (NM_178558, exon 4 of 4) exon (NM_178558, exon 4 of 4) 40983 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 533-16 chr10 43279841 43280093 + 4 NA Intergenic L1MCa|LINE|L1 -12902 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 643-2 chr1 43187531 43187807 + 4 NA intron (NM_001195831, intron 6 of 23) L1MB7|LINE|L1 -15099 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 1056-12 chr4 57966296 57966831 + 4 NA Intergenic LTR12C|LTR|ERV1 540691 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 672-82 chr4 100545012 100545297 + 4 NA Intergenic MER5A|DNA|hAT-Charlie -27132 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 1314-5 chr7 10466531 10467168 + 4 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -235827 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 652-10 chr1 224413138 224413442 + 4 NA intron (NM_025160, intron 6 of 13) intron (NM_025160, intron 6 of 13) -14979 NR_039896 100616468 NR_039896 ENSG00000266618 MIR4742 mir-4742 microRNA 4742 ncRNA 729-60 chr5 19330951 19331255 + 4 NA Intergenic L1PB4|LINE|L1 555169 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 696-109 chr8 119880768 119881025 + 4 NA intron (NM_001283012, intron 1 of 6) (ATTA)n|Simple_repeat|Simple_repeat 7174 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 1084-15 chr4 43822433 43823120 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -194085 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 490-215 chr5 15937597 15937729 + 4 NA 3' UTR (NM_012304, exon 4 of 4) 3' UTR (NM_012304, exon 4 of 4) 2481 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 938-29 chr9 38209552 38209885 + 4 NA Intergenic AluSx1|SINE|Alu -140491 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 996-16 chr20 42145571 42146071 + 4 NA intron (NM_133170, intron 18 of 31) intron (NM_133170, intron 18 of 31) -527444 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 514-67 chr12 119366400 119366545 + 4 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 31743 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 715-43 chr2 163243889 163244167 + 4 NA Intergenic Charlie7|DNA|hAT-Charlie -405261 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 646-69 chr20 8450014 8450270 + 4 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 201438 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 1608-2 chr4 30594544 30595282 + 4 NA Intergenic L1MEg|LINE|L1 -125456 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 857-9 chr10 26427422 26427954 + 4 NA Intergenic Intergenic -10653 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 774-80 chr7 8605106 8605433 + 4 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 171660 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 791-43 chr22 34755899 34756270 + 4 NA TTS (NR_138042) TTS (NR_138042) 241832 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 672-78 chr4 36704964 36705267 + 4 NA Intergenic Intergenic -63215 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 704-4 chr1 110123537 110123861 + 4 NA Intergenic Intergenic 11256 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 1331-2 chr12 34664853 34665467 + 4 NA Intergenic ALR/Alpha|Satellite|centr 642664 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 756-63 chr8 128544250 128544622 + 4 NA intron (NR_121672, intron 2 of 7) MIRb|SINE|MIR 20243 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 534-212 chr6 23834455 23834798 + 4 NA Intergenic Intergenic -291589 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 546-125 chr20 22091344 22091499 + 4 NA Intergenic AluSc8|SINE|Alu 37331 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 1064-17 chr8 114654913 114655411 + 4 NA Intergenic Intergenic 1012851 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 736-8 chr1 229685474 229685787 + 4 NA Intergenic L1M4|LINE|L1 59383 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 666-89 chr5 10972388 10972639 + 4 NA non-coding (NR_109988, exon 22 of 22) non-coding (NR_109988, exon 22 of 22) -211279 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 558-100 chr2 105704305 105704483 + 4 NA Intergenic L1MA4A|LINE|L1 -40518 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 717-35 chr17 59759541 59759952 + 4 NA intron (NM_001329401, intron 4 of 9) L1MEc|LINE|L1 52092 NM_001329400 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 780-25 chr18 4871400 4871872 + 4 NA Intergenic L1MB4|LINE|L1 -209546 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 696-67 chr21 42683077 42683264 + 4 NA intron (NM_001001575, intron 1 of 14) MER92-int|LTR|ERV1 29418 NM_001001568 5152 Hs.473927 NM_002606 ENSG00000160191 PDE9A HSPDE9A2 phosphodiesterase 9A protein-coding 1056-4 chr14 82049165 82049718 + 4 NA Intergenic Intergenic -306303 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 731-57 chr5 67592853 67593145 + 4 NA Intergenic L2b|LINE|L2 53790 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 629-84 chr3 183234211 183234481 + 4 NA intron (NM_015078, intron 15 of 29) intron (NM_015078, intron 15 of 29) -18907 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 472-179 chr2 225253213 225253365 + 4 NA Intergenic Intergenic -146421 NM_001371273 404-59 chr11 23877511 23877754 + 4 NA Intergenic Arthur1|DNA|hAT-Tip100 -458442 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 529-161 chr4 66635375 66635588 + 4 NA Intergenic L2c|LINE|L2 358657 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 679-118 chrX 95954844 95955042 + 4 NA Intergenic Intergenic 382959 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 836-5 chr1 211211467 211211999 + 4 NA Intergenic AluSq2|SINE|Alu -47544 NR_146432 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 798-12 chr14 60479497 60479884 + 4 NA intron (NM_174978, intron 4 of 17) intron (NM_174978, intron 4 of 17) 6373 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 618-119 chr7 85897275 85897562 + 4 NA Intergenic Intergenic 476296 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 616-146 chr6 121010783 121010967 + 4 NA Intergenic LTR85b|LTR|Gypsy? 323605 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 760-11 chr11 116616291 116616581 + 4 NA Intergenic L1MEh|LINE|L1 -22986 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 1002-15 chr5 171249652 171250178 + 4 NA intron (NM_022897, intron 24 of 27) L1M2|LINE|L1 -59333 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 1609 chr12 37887444 37888319 + 4 NA Intergenic ALR/Alpha|Satellite|centr -428893 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 569-143 chr5 37855032 37855210 + 4 NA intron (NR_103441, intron 1 of 3) MamRTE1|LINE|RTE-BovB 14683 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 803-34 chr4 32725020 32725565 + 4 NA Intergenic L1ME4b|LINE|L1 374254 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 812-2 chr1 76274028 76274359 + 4 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 199447 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 488-79 chr14 60703754 60703919 + 4 NA Intergenic Intergenic 20515 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 754-41 chr2 71462231 71462474 + 4 NA intron (NM_003494, intron 1 of 54) MER52A|LTR|ERV1 -4347 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 1657 chr7 63133721 63134482 + 4 NA Intergenic L1MA3|LINE|L1 169955 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 966-23 chr6 51690098 51690447 + 4 NA intron (NM_138694, intron 60 of 66) AluSx4|SINE|Alu 68402 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 600-60 chr2 23193732 23193943 + 4 NA Intergenic L1M4a1|LINE|L1 -191342 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 986-22 chr3 123467071 123467482 + 4 NA Intergenic Intergenic -18731 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 648-38 chr14 57649033 57649203 + 4 NA intron (NM_001352014, intron 1 of 9) L2c|LINE|L2 -155261 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 782-27 chr18 46730191 46730550 + 4 NA intron (NM_001307986, intron 1 of 7) intron (NM_001307986, intron 1 of 7) 26683 NM_013305 29906 Hs.465025 NM_013305 ENSG00000101638 ST8SIA5 SIAT8-E|SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 628-24 chr10 39291788 39292052 + 4 NA Intergenic ALR/Alpha|Satellite|centr 595324 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 710-47 chr2 158519886 158520159 + 4 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 63070 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 448-233 chr6 4865584 4865833 + 4 NA intron (NM_001143970, intron 1 of 6) L1MEd|LINE|L1 -24332 NM_001143971 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 598-4 chr1 57175039 57175310 + 4 NA intron (NM_001353980, intron 5 of 5) Tigger13a|DNA|TcMar-Tigger -209034 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 624-56 chr19 57568290 57568453 + 4 NA Intergenic MER66-int|LTR|ERV1 -8508 NM_001277092 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 1261-3 chr3 175816200 175816867 + 4 NA Intergenic AluSz|SINE|Alu -40200 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 482-16 chr1 163961735 163961919 + 4 NA Intergenic Intergenic -538636 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 566-117 chr21 36575952 36576106 + 4 NA intron (NM_001146077, intron 1 of 2) intron (NM_001146077, intron 1 of 2) 540 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 518-42 chr10 116765555 116765765 + 4 NA intron (NM_001330164, intron 2 of 12) L1MC5a|LINE|L1 -23094 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 894-43 chr6 161906488 161906975 + 4 NA intron (NM_004562, intron 6 of 11) MLT2A2|LTR|ERVL 435754 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 583-82 chr2 36202048 36202339 + 4 NA Intergenic MER20B|DNA|hAT-Charlie 153377 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 593-121 chr6 40687404 40687620 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -100148 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 667-65 chr3 62366489 62366858 + 4 NA Intergenic Intergenic 6877 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 916-34 chr7 138350175 138350487 + 4 NA Intergenic AluSx|SINE|Alu -109928 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 646-9 chr1 208824286 208824545 + 4 NA Intergenic Intergenic 95727 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 525-270 chr8 130695143 130695298 + 4 NA Intergenic MIR3|SINE|MIR -251546 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 785-57 chr7 101844337 101844643 + 4 NA intron (NM_181552, intron 1 of 23) L1MEh|LINE|L1 26864 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 752-41 chr2 170135052 170135392 + 4 NA Intergenic L1MA4|LINE|L1 -42925 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 544-241 chrX 147720401 147720620 + 4 NA Intergenic Intergenic 191307 NR_024503 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 1423-2 chr2 161484273 161484918 + 4 NA Intergenic L1MA5A|LINE|L1 23307 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 698-60 chr3 96053201 96053406 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR -306661 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 611-27 chr11 99978019 99978356 + 4 NA intron (NM_001243270, intron 7 of 23) Tigger3b|DNA|TcMar-Tigger 422042 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 681-33 chr19 30055344 30055562 + 4 NA Intergenic L1M5|LINE|L1 113214 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 444-103 chr18 52010973 52011127 + 4 NA Intergenic AluSz6|SINE|Alu -329147 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 343-292 chr20 5372104 5372329 + 4 NA Intergenic Intergenic -55484 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 797-39 chr4 177135928 177136262 + 4 NA Intergenic Intergenic -173779 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 892-41 chr9 79836136 79836523 + 4 NA intron (NR_121213, intron 1 of 2) L2b|LINE|L2 11799 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 370-428 chr7 114374468 114374642 + 4 NA intron (NR_033766, intron 2 of 19) intron (NR_033766, intron 2 of 19) -40260 NR_033767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 685-89 chr7 46507975 46508257 + 4 NA Intergenic Intergenic 189006 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 778-65 chr8 82991764 82991988 + 4 NA Intergenic MLT1H1|LTR|ERVL-MaLR 79772 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 473-51 chr12 11472747 11472909 + 4 NA intron (NR_148969, intron 2 of 4) L1MB2|LINE|L1 13850 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 1537-2 chr2 122129489 122130199 + 4 NA Intergenic L1MA4A|LINE|L1 374193 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 514-146 chr2 79472764 79473002 + 4 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 27961 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 531-58 chr14 39429843 39430154 + 4 NA intron (NM_203301, intron 1 of 3) intron (NM_203301, intron 1 of 3) 2502 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 470-279 chr8 133966607 133966793 + 4 NA Intergenic MamRep434|DNA|TcMar-Tigger 80204 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 571-37 chr12 58169179 58169459 + 4 NA Intergenic Intergenic 81427 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 613-85 chr3 131127322 131127606 + 4 NA intron (NM_001353036, intron 5 of 14) L1MEg|LINE|L1 99736 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 644-111 chr9 100382933 100383202 + 4 NA Intergenic MSTC|LTR|ERVL-MaLR -30125 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 260-286 chr3 129802171 129802296 + 4 NA intron (NM_001349271, intron 2 of 4) Plat_L3|LINE|CR1 -7621 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 617-18 chr11 35038473 35038657 + 4 NA Intergenic Intergenic 96728 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 569-70 chr17 55643981 55644277 + 4 NA Intergenic MIR1_Amn|SINE|MIR 78735 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 719-21 chr12 66054968 66055212 + 4 NA Intergenic Intergenic -24024 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 792-55 chr6 161430074 161430404 + 4 NA intron (NM_004562, intron 9 of 11) LTR40a|LTR|ERVL -40738 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 752-45 chr20 39904082 39904411 + 4 NA Intergenic Intergenic -100215 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 701-14 chr12 18030960 18031412 + 4 NA Intergenic L1MEg|LINE|L1 59007 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 612-35 chr13 86826351 86826593 + 4 NA Intergenic LTR40b|LTR|ERVL -85448 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 1058-21 chr8 136145331 136145653 + 4 NA Intergenic Intergenic -385306 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 814-4 chr1 247751043 247751354 + 4 NA Intergenic L1M3e|LINE|L1 -3040 NM_001355292 388761 Hs.283211 NM_001355292 ENSG00000241128 OR14A2 OR5AX1|OR5AX1P olfactory receptor family 14 subfamily A member 2 protein-coding 528-8 chr1 63953425 63953663 + 4 NA intron (NM_005012, intron 1 of 8) MER44A|DNA|TcMar-Tigger 158661 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 1116-10 chr3 137370151 137370819 + 4 NA Intergenic Intergenic -393830 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 1070-16 chr6 149002827 149003220 + 4 NA intron (NM_005715, intron 5 of 7) intron (NM_005715, intron 5 of 7) 29638 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 491-230 chr6 120235710 120235929 + 4 NA Intergenic L1M2|LINE|L1 220640 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 1666-4 chr4 31343673 31344692 + 4 NA Intergenic L1MB7|LINE|L1 -162362 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 616-89 chr2 138786007 138786191 + 4 NA Intergenic Intergenic -5709 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 400-22 chr1 208875975 208876147 + 4 NA Intergenic Intergenic -96393 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 494-307 chr9 28778658 28778857 + 4 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -59452 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 537-107 chr2 51300164 51300389 + 4 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 267675 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 1550 chr11 55028290 55029051 + 4 NA Intergenic ALR/Alpha|Satellite|centr -233485 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 728-12 chr10 78893480 78893798 + 4 NA Intergenic Intergenic 173809 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 606-63 chr17 66054932 66055214 + 4 NA intron (NM_001353129, intron 11 of 26) intron (NM_001353129, intron 11 of 26) 136819 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 936-8 chr13 96786651 96787153 + 4 NA intron (NM_153456, intron 1 of 1) L1ME1|LINE|L1 197270 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 612-73 chr2 181750910 181751182 + 4 NA Intergenic L2c|LINE|L2 -70381 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 474-118 chr18 40476946 40477111 + 4 NA Intergenic Intergenic 410742 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 561-19 chr10 32391537 32391712 + 4 NA Intergenic Charlie29a|DNA|hAT-Charlie -12855 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 391-317 chr6 156653039 156653276 + 4 NA Intergenic Intergenic -124698 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 1016-14 chr3 115251477 115251806 + 4 NA Intergenic Intergenic -104353 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 547-257 chr9 4323166 4323326 + 4 NA Intergenic SVA_F|Retroposon|SVA -23178 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 938-25 chr6 123241566 123241859 + 4 NA intron (NM_006073, intron 38 of 40) intron (NM_006073, intron 38 of 40) -197892 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 716-69 chr5 127620477 127620763 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR -28401 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 283-435 chr8 76931801 76931936 + 4 NA Intergenic LTR16E2|LTR|ERVL 34982 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 500-309 chr8 130695745 130695897 + 4 NA Intergenic MIRb|SINE|MIR -252147 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 1266-4 chr9 2543510 2544155 + 4 NA intron (NR_015375, intron 1 of 3) intron (NR_015375, intron 1 of 3) -77955 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 626-27 chr11 97410208 97410381 + 4 NA Intergenic L1M3e|LINE|L1 901869 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 519-171 chr5 32875568 32875740 + 4 NA Intergenic Tigger13a|DNA|TcMar-Tigger -71789 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 1364-7 chr6 86348514 86349139 + 4 NA Intergenic L1MA3|LINE|L1 -588702 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 852-50 chr9 138096889 138097218 + 4 NA intron (NM_001243812, intron 36 of 45) intron (NM_001243812, intron 36 of 45) -51982 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 764-70 chr8 125696938 125697285 + 4 NA Intergenic Intergenic 254086 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 1293 chr1 233771779 233772153 + 4 NA Intergenic Intergenic -132710 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 385-298 chr5 58318989 58319184 + 4 NA Intergenic Intergenic 141000 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 656-34 chr12 28593319 28593607 + 4 NA Intergenic Intergenic -402725 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 667-86 chr5 46077119 46077413 + 4 NA Intergenic ALR/Alpha|Satellite|centr -380886 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1054-18 chr8 19917807 19918208 + 4 NA Intergenic L1M5|LINE|L1 -21246 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 714-44 chr20 28817390 28817822 + 4 NA Intergenic ALR/Alpha|Satellite|centr -214941 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 988-33 chr7 21491936 21492356 + 4 NA intron (NM_003112, intron 5 of 5) L1MEf|LINE|L1 21088 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 778-61 chr7 31162138 31162419 + 4 NA Intergenic L1ME3A|LINE|L1 109817 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 702-34 chr17 73869563 73869785 + 4 NA Intergenic Intergenic -41137 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 655-19 chr11 3364716 3365081 + 4 NA intron (NR_046381, intron 4 of 6) L1M4c|LINE|L1 14248 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 759-77 chr8 142264448 142264954 + 4 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 66345 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 602-49 chr19 36545972 36546219 + 4 NA 3' UTR (NM_001321351, exon 6 of 6) 3' UTR (NM_001321351, exon 6 of 6) -17824 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 1290 chr10 63201015 63201424 + 4 NA intron (NM_001322258, intron 9 of 24) intron (NM_001322258, intron 9 of 24) 67891 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 526-260 chr9 30700527 30700701 + 4 NA Intergenic L1PA16|LINE|L1 -292160 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 938-22 chr5 52297298 52297731 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 289483 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 866-21 chr16 78548444 78548884 + 4 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 449010 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 715-44 chr2 220115425 220115809 + 4 NA Intergenic Intergenic -209052 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 744-15 chr11 114602132 114602476 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -6518 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 577-116 chr3 14097183 14097402 + 4 NA Intergenic L1MA9|LINE|L1 27578 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 594-104 chr4 99692614 99692832 + 4 NA Intergenic Intergenic -38044 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 730-63 chr5 173591371 173591574 + 4 NA Intergenic MIRb|SINE|MIR 11838 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 775-59 chr3 81183618 81183916 + 4 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 189899 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 789-20 chr16 25310745 25310969 + 4 NA Intergenic L1M2|LINE|L1 -53012 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 925-14 chr15 56583599 56584027 + 4 NA Intergenic MER65A|LTR|ERV1 -118676 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 598-142 chr8 103592343 103592620 + 4 NA intron (NM_001348497, intron 1 of 22) LTR89|LTR|ERVL? -90571 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 920-30 chr9 71478485 71478817 + 4 NA Intergenic Intergenic -31680 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 642-13 chr10 91069180 91069343 + 4 NA Intergenic MER97a|DNA|hAT-Tip100 23453 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 701-38 chr2 6716841 6717024 + 4 NA Intergenic Intergenic 53379 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 754-71 chr6 50770920 50771223 + 4 NA intron (NM_172238, intron 7 of 7) intron (NM_172238, intron 7 of 7) -47800 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 997-25 chr8 128363630 128363987 + 4 NA Intergenic L1MC5|LINE|L1 200871 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 452-63 chr12 133158483 133158605 + 4 NA 3' UTR (NM_015394, exon 5 of 5) 3' UTR (NM_015394, exon 5 of 5) -22951 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 885-6 chr12 9832082 9832409 + 4 NA intron (NR_120305, intron 1 of 3) intron (NR_120305, intron 1 of 3) 4764 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 899-33 chr8 87812030 87812359 + 4 NA Intergenic Intergenic 61821 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 963-17 chr17 70841883 70842459 + 4 NA Intergenic Intergenic 360008 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 444-23 chr10 62832239 62832388 + 4 NA Intergenic Intergenic -13146 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 624-53 chr18 1185204 1185386 + 4 NA Intergenic Intergenic 174334 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 782-78 chrX 40205759 40206032 + 4 NA Intergenic Intergenic -28566 NM_001123383 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 722-77 chr8 87704955 87705240 + 4 NA Intergenic L1MA3|LINE|L1 168918 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 695-81 chr5 61693539 61693740 + 4 NA intron (NR_109910, intron 3 of 7) L1M3|LINE|L1 4793 NR_109910 101928651 Hs.662309 NR_109910 ENSG00000248529 LOC101928651 - uncharacterized LOC101928651 ncRNA 422-292 chr8 19567628 19567762 + 4 NA intron (NM_001354495, intron 2 of 9) L1ME3|LINE|L1 34850 NM_001354499 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 605-118 chr8 12986299 12986592 + 4 NA intron (NM_020844, intron 1 of 4) intron (NM_020844, intron 1 of 4) -25819 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 719-27 chr14 56163329 56163650 + 4 NA intron (NM_021255, intron 1 of 5) L1MA1|LINE|L1 45078 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 523-253 chr6 156611191 156611489 + 4 NA Intergenic L1MEd|LINE|L1 -166515 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 1244-2 chr10 73322123 73322848 + 4 NA intron (NM_001367801, intron 10 of 27) FRAM|SINE|Alu 36269 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 868-34 chr6 38467934 38468292 + 4 NA intron (NM_001172418, intron 5 of 10) AluJr|SINE|Alu -13483 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 676-62 chr2 104130151 104130465 + 4 NA Intergenic L1MD2|LINE|L1 278024 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 733-29 chr2 4607164 4607365 + 4 NA Intergenic Intergenic 48958 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 696-104 chr7 154447915 154448204 + 4 NA intron (NR_157196, intron 2 of 25) L1MB7|LINE|L1 142900 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 502-223 chr5 78515390 78515568 + 4 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 133293 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 690-86 chr5 150949107 150949387 + 4 NA Intergenic L1MC5|LINE|L1 -2663 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 691-16 chr11 117853079 117853417 + 4 NA intron (NM_001164832, intron 1 of 8) L1ME3F|LINE|L1 23410 NM_001164836 53826 Hs.744850 NM_022003 ENSG00000137726 FXYD6 - FXYD domain containing ion transport regulator 6 protein-coding 1396-9 chr5 25551544 25551902 + 4 NA Intergenic Intergenic 360770 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 682-47 chr2 46208085 46208299 + 4 NA Intergenic L1PA16|LINE|L1 -89215 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 432-43 chr11 15636339 15636568 + 4 NA Intergenic Intergenic -7432 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 690-91 chr6 113288467 113288683 + 4 NA Intergenic Intergenic 144872 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 856-26 chr2 193258756 193259144 + 4 NA Intergenic Intergenic 509105 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 786-68 chr8 134772140 134772527 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 28274 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 541-6 chr1 68520117 68520352 + 4 NA intron (NR_110671, intron 1 of 2) L1MEf|LINE|L1 -23152 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 652-110 chr7 64675177 64675472 + 4 NA intron (NM_016220, intron 2 of 6) L1PA15|LINE|L1 -3740 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 530-186 chr5 9321671 9321920 + 4 NA intron (NM_003966, intron 4 of 22) intron (NM_003966, intron 4 of 22) -189538 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 658-94 chr5 21433873 21434154 + 4 NA Intergenic Intergenic -25467 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 210-205 chr4 97171476 97171571 + 4 NA Intergenic L2a|LINE|L2 -195403 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 623-78 chr22 32893380 32893579 + 4 NA intron (NM_003490, intron 4 of 13) L2b|LINE|L2 92663 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 369-383 chr7 34393501 34393606 + 4 NA intron (NR_033665, intron 3 of 3) LTR49-int|LTR|ERV1 -264665 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 804-42 chr3 118371730 118372096 + 4 NA Intergenic Intergenic -269855 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 1097-11 chr3 100506543 100507091 + 4 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 14198 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 920-20 chr3 180211836 180212292 + 4 NA Intergenic MIR|SINE|MIR -175127 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 1393-3 chr8 89108461 89109115 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR 648923 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 569-166 chr7 39307537 39307760 + 4 NA intron (NM_001370959, intron 4 of 9) Arthur1|DNA|hAT-Tip100 21486 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 2597 chr10 41911634 41912898 + 4 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 455779 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 542-141 chr3 124101349 124101616 + 4 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 6775 NM_001322992 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 721-71 chr5 94231552 94231930 + 4 NA intron (NM_001145678, intron 20 of 20) L1M5|LINE|L1 -120042 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 1085-16 chr6 40051198 40051784 + 4 NA Intergenic Intergenic -117029 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 681-73 chr6 73034648 73034984 + 4 NA intron (NM_001160132, intron 2 of 13) intron (NM_001160132, intron 2 of 13) -67063 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 975 chr1 191812619 191812955 + 4 NA Intergenic Intergenic -345675 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 416-310 chr7 53344277 53344438 + 4 NA Intergenic L2c|LINE|L2 308724 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 865-23 chr2 102744470 102744750 + 4 NA intron (NM_001321346, intron 1 of 3) L1MCa|LINE|L1 7675 NM_001321343 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 991-4 chr10 44090516 44090969 + 4 NA Intergenic L1MCa|LINE|L1 178340 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 738-29 chr16 83411896 83412128 + 4 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -96334 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 782-69 chr8 78991856 78992231 + 4 NA Intergenic L1MB3|LINE|L1 154514 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 868-13 chr15 81913800 81914216 + 4 NA Intergenic Intergenic 132010 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 1046-14 chr3 132993876 132994275 + 4 NA Intergenic MER103C|DNA|hAT-Charlie -44213 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 707-53 chr2 122677516 122677790 + 4 NA Intergenic Intergenic 395828 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 668-47 chr2 68609771 68609982 + 4 NA Intergenic L1PA16|LINE|L1 -33712 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 1129 chr1 53099462 53100038 + 4 NA intron (NR_109858, intron 5 of 10) intron (NR_109858, intron 5 of 10) 37537 NM_001199080 127435 Hs.586141 NM_153703 ENSG00000174348 PODN PCAN|SLRR5A podocan protein-coding 438-33 chr10 62506017 62506245 + 4 NA intron (NM_199451, intron 4 of 7) intron (NM_199451, intron 4 of 7) -14317 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 703-27 chr14 50037208 50037573 + 4 NA intron (NR_131171, intron 6 of 8) L2c|LINE|L2 -29870 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 422-303 chr8 119144275 119144449 + 4 NA Intergenic Intergenic -64001 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 1304 chr13 102420557 102421164 + 4 NA Intergenic L1MEg|LINE|L1 -18417 NM_001321947 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 1110-8 chr19 44247991 44248376 + 4 NA Intergenic L1MEc|LINE|L1 -11697 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 694-54 chr18 10366146 10366326 + 4 NA Intergenic Intergenic 48134 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 685-72 chr4 58392020 58392262 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR 144187 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 2202 chr14 72760405 72761363 + 4 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 131765 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 528-77 chr13 83905182 83905394 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -22814 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 674-52 chr21 22973826 22974080 + 4 NA Intergenic Intergenic -105331 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 1178-8 chr5 50316840 50317171 + 4 NA Intergenic L1P4|LINE|L1 124283 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 1039-10 chr2 114369077 114369597 + 4 NA Intergenic Intergenic -73304 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 774-32 chr17 16558247 16558550 + 4 NA intron (NM_020653, intron 5 of 5) AluJb|SINE|Alu 10806 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 704-64 chr4 154964325 154964665 + 4 NA Intergenic L2a|LINE|L2 182990 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 576-72 chr18 10998293 10998541 + 4 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 150345 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 596-74 chr16 9233529 9233781 + 4 NA Intergenic Intergenic -121933 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 431-89 chr15 26674784 26674977 + 4 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) 41885 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 897-6 chr10 37892124 37892525 + 4 NA Intergenic L1MEd|LINE|L1 -34221 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 410-248 chr5 116950493 116950621 + 4 NA Intergenic Intergenic -188348 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 822-61 chr8 89047277 89047691 + 4 NA Intergenic L1PA15|LINE|L1 710227 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 680-54 chr2 75246083 75246284 + 4 NA Intergenic L1MEj|LINE|L1 -46663 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 1576-2 chr10 81240152 81240948 + 4 NA Intergenic Intergenic 590753 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 617-96 chr4 74825066 74825328 + 4 NA Intergenic AluSc8|SINE|Alu -30674 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 481-308 chr8 136782200 136782436 + 4 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 251520 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 521-192 chr5 51147629 51147819 + 4 NA Intergenic L1PA16|LINE|L1 -177537 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 546-145 chr3 53557745 53557926 + 4 NA intron (NM_001128840, intron 3 of 47) L1ME1|LINE|L1 63224 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 839-10 chr12 86368818 86369151 + 4 NA intron (NM_001351286, intron 3 of 7) L1M4c|LINE|L1 -111685 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 718-50 chr3 8390066 8390384 + 4 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 111433 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 822-54 chr7 9911558 9911942 + 4 NA Intergenic L1MA3|LINE|L1 277480 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 1045-20 chr6 34168280 34168710 + 4 NA Intergenic L1MA2|LINE|L1 -12873 NM_001256809 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 960-17 chr18 71752122 71752583 + 4 NA intron (NR_126324, intron 1 of 4) intron (NR_126324, intron 1 of 4) 29874 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 939-8 chr11 38830021 38830425 + 4 NA Intergenic L1MC1|LINE|L1 181365 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 868-32 chr5 120359298 120359712 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -104773 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 1009-17 chr5 123627839 123628357 + 4 NA Intergenic L1MA8|LINE|L1 82681 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 725-51 chr6 50378925 50379300 + 4 NA Intergenic Intergenic -329183 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 504-240 chr7 50846823 50847021 + 4 NA Intergenic Intergenic -53469 NM_001371008 536-214 chr7 49032695 49033052 + 4 NA Intergenic L1ME1|LINE|L1 108326 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 915-20 chr4 37657174 37657567 + 4 NA intron (NM_001085400, intron 1 of 6) intron (NM_001085400, intron 1 of 6) 29006 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 616-149 chr6 144945435 144945682 + 4 NA Intergenic Intergenic 539903 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 456-110 chr15 75933693 75933856 + 4 NA non-coding (NR_037623, exon 6 of 6) non-coding (NR_037623, exon 6 of 6) 29896 NM_147188 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 910-38 chr8 83560224 83560761 + 4 NA Intergenic Intergenic 156734 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 541-142 chr20 46686027 46686240 + 4 NA 3' UTR (NM_033550, exon 2 of 2) 3' UTR (NM_033550, exon 2 of 2) -1648 NM_001011554 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 927-28 chr9 82696612 82697087 + 4 NA Intergenic Intergenic 366293 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 409-270 chr6 153700094 153700307 + 4 NA Intergenic MIR3|SINE|MIR -310296 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 846-9 chr11 108439760 108440112 + 4 NA intron (NR_147053, intron 3 of 12) L1MB4|LINE|L1 27593 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 1048-20 chr5 143980206 143980618 + 4 NA Intergenic Intergenic 168251 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 651-99 chr5 78632032 78632222 + 4 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 16645 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 461-190 chr4 46957782 46957957 + 4 NA intron (NM_001204267, intron 7 of 7) MIR|SINE|MIR 35712 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 1994 chr1 181163232 181164222 + 4 NA Intergenic L1MEi|LINE|L1 -10757 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 815-32 chr3 4354647 4354981 + 4 NA Intergenic Intergenic 51510 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 799-47 chr6 48692915 48693250 + 4 NA Intergenic L1PREC2|LINE|L1 -624393 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 634-69 chr2 3674273 3674554 + 4 NA intron (NM_018436, intron 3 of 11) intron (NM_018436, intron 3 of 11) 16213 NM_018436 55821 Hs.97899 NM_018436 ENSG00000151360 ALLC ALC allantoicase protein-coding 292-226 chr2 124654376 124654467 + 4 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 629134 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 635-44 chr18 34130646 34130924 + 4 NA intron (NM_001353232, intron 1 of 9) intron (NM_001353232, intron 1 of 9) -82173 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 629-132 chr8 123842373 123842663 + 4 NA Intergenic L1M3c|LINE|L1 -9469 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 780-10 chr11 77060483 77060985 + 4 NA Intergenic MSTB1|LTR|ERVL-MaLR -6237 NM_004055 726 Hs.248153 NM_004055 ENSG00000149260 CAPN5 ADNIV|HTRA3|VRNI|nCL-3 calpain 5 protein-coding 492-221 chr5 129602585 129602820 + 4 NA intron (NM_133638, intron 8 of 22) intron (NM_133638, intron 8 of 22) -142013 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 666-77 chr3 62370891 62371147 + 4 NA intron (NM_018008, intron 4 of 4) intron (NM_018008, intron 4 of 4) 2531 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 884-41 chr5 164918650 164919120 + 4 NA Intergenic L1M8|LINE|L1 448606 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 710-43 chr2 108366514 108366706 + 4 NA Intergenic Intergenic -11344 NR_135779 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 1032-25 chr8 133902273 133902785 + 4 NA TTS (NR_125424) TTS (NR_125424) 16033 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 2251 chr14 61955663 61956967 + 4 NA intron (NM_001367663, intron 1 of 7) L1MA10|LINE|L1 28620 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 675-22 chr12 79757998 79758308 + 4 NA Intergenic L1ME4a|LINE|L1 -67056 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 442-287 chr8 88933295 88933572 + 4 NA Intergenic L1PREC2|LINE|L1 -605950 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 530-48 chr12 2281549 2281762 + 4 NA intron (NR_046769, intron 1 of 2) L1ME1|LINE|L1 11879 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 935 chr1 34115495 34115867 + 4 NA intron (NM_052896, intron 1 of 69) L1MB2|LINE|L1 49593 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 442-196 chr3 118423719 118423857 + 4 NA Intergenic L1MA4|LINE|L1 -217980 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 884-45 chr7 51581749 51582280 + 4 NA Intergenic L1M4|LINE|L1 -188758 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 620-89 chr3 83936875 83937119 + 4 NA Intergenic Intergenic 932578 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 888-17 chr18 8522233 8522573 + 4 NA Intergenic Intergenic -87042 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 924-39 chr7 136624845 136625304 + 4 NA Intergenic L1MC5a|LINE|L1 -243578 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 589-115 chr4 101947973 101948189 + 4 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 134239 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 682-65 chr3 118275176 118275402 + 4 NA Intergenic Intergenic -366479 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 416-335 chr8 82085893 82086066 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -243693 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 597-65 chr2 41224193 41224466 + 4 NA Intergenic L1PA8A|LINE|L1 -653226 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 1062-13 chr3 40952099 40952722 + 4 NA Intergenic L1MA9|LINE|L1 -247095 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 908-44 chr8 129921670 129921956 + 4 NA intron (NM_001353256, intron 2 of 13) L1MC4|LINE|L1 17998 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 488-67 chr13 43155419 43155654 + 4 NA intron (NR_047013, intron 1 of 2) intron (NR_047013, intron 1 of 2) 42371 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 1486-4 chr8 135011089 135011792 + 4 NA Intergenic Intergenic 161505 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 640-40 chr15 63866355 63866592 + 4 NA Intergenic Intergenic 4546 NR_029944 494334 NR_029944 ENSG00000199156 MIR422A MIRN422A microRNA 422a ncRNA 775-31 chr15 94555841 94556233 + 4 NA Intergenic Intergenic 200107 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 462-253 chr6 169538476 169538613 + 4 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 163485 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 538-40 chr11 55036500 55036735 + 4 NA Intergenic ALR/Alpha|Satellite|centr -225538 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 648-50 chr15 100386496 100386814 + 4 NA intron (NR_120374, intron 1 of 4) L1MD2|LINE|L1 13716 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 769-56 chr6 54583861 54584079 + 4 NA Intergenic Intergenic -262801 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 641-53 chr18 56202778 56203070 + 4 NA Intergenic Intergenic -11662 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 366-66 chr10 111575670 111575832 + 4 NA Intergenic Intergenic 461460 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 581-176 chr8 120386640 120386843 + 4 NA Intergenic L1PB3|LINE|L1 58409 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 615-102 chr5 8799341 8799587 + 4 NA Intergenic Intergenic -40268 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 384-121 chr15 74932140 74932350 + 4 NA intron (NM_004255, intron 1 of 4) intron (NM_004255, intron 1 of 4) 5828 NM_004255 9377 Hs.401903 NM_004255 ENSG00000178741 COX5A COX|COX-VA|VA cytochrome c oxidase subunit 5A protein-coding 1014-23 chr9 88699865 88700233 + 4 NA Intergenic MLT2C1|LTR|ERVL 45856 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 911-4 chr10 62699670 62700001 + 4 NA Intergenic L1MEg|LINE|L1 -104885 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 928-8 chr16 82902889 82903287 + 4 NA intron (NM_001220490, intron 2 of 12) MIRb|SINE|MIR 87210 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 805-13 chr14 46417613 46417981 + 4 NA intron (NR_102702, intron 3 of 3) L1MB1|LINE|L1 -53562 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 517-238 chr6 81493608 81493767 + 4 NA Intergenic Intergenic 258994 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 566-3 chr1 58731257 58731591 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -31362 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 530-52 chr12 9697680 9697970 + 4 NA non-coding (NR_036693, exon 4 of 4) non-coding (NR_036693, exon 4 of 4) 28112 NM_013269 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 1009-9 chr17 71100446 71100826 + 4 NA intron (NR_104152, intron 3 of 3) MLT1C|LTR|ERVL-MaLR 101543 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 1034-13 chr2 163803479 163804056 + 4 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat -67759 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 649-99 chr7 703029 703324 + 4 NA intron (NM_001164760, intron 2 of 10) L1ME1|LINE|L1 9348 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 571-125 chr4 136732946 136733219 + 4 NA Intergenic L1M4|LINE|L1 -460674 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 601-150 chr8 135314497 135314743 + 4 NA Intergenic AluJb|SINE|Alu 80489 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 587-109 chr3 158200396 158200655 + 4 NA intron (NM_001271834, intron 3 of 8) L1MEf|LINE|L1 90436 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 3098-2 chr6 130274917 130276367 + 4 NA intron (NM_001258275, intron 2 of 13) intron (NM_001258275, intron 2 of 13) -52691 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 1365-6 chr7 17266225 17266795 + 4 NA Intergenic L1M2|LINE|L1 -32142 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 442-183 chr3 32006640 32006856 + 4 NA Intergenic L1M5|LINE|L1 -24898 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 466-63 chr12 59492548 59492728 + 4 NA Intergenic Intergenic -103391 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 471-279 chr9 25387769 25388040 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger 290954 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 782-26 chr16 65829575 65829859 + 4 NA Intergenic MIRb|SINE|MIR -253417 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 1047-19 chr5 146989036 146989509 + 4 NA intron (NM_001271900, intron 2 of 10) L1MA6|LINE|L1 66865 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 571-164 chr8 43238616 43238774 + 4 NA Intergenic SAR|Satellite|Satellite -53747 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 581-179 chr8 136976584 136976860 + 4 NA Intergenic Intergenic 436866 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 385-322 chr6 40731437 40731621 + 4 NA Intergenic Intergenic -144165 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 633-25 chr11 91554667 91554870 + 4 NA Intergenic Intergenic -670266 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1392 chr16 17033210 17033871 + 4 NA Intergenic L1MC4|LINE|L1 -100964 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 971-18 chr8 139030714 139031155 + 4 NA Intergenic L1ME3A|LINE|L1 -116893 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 832-37 chr5 85618289 85618647 + 4 NA Intergenic Intergenic -663976 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 669-100 chr7 7450217 7450642 + 4 NA intron (NM_001037763, intron 18 of 34) L1M5|LINE|L1 85444 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 748-79 chr7 19602093 19602456 + 4 NA Intergenic L1PA16|LINE|L1 103162 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 788-57 chr9 78160329 78160912 + 4 NA Intergenic AluY|SINE|Alu -75455 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 816-29 chr22 22669923 22670266 + 4 NA Intergenic L1ME4b|LINE|L1 23782 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 896-6 chr12 120069489 120069715 + 4 NA intron (NM_001367886, intron 4 of 9) intron (NM_001367886, intron 4 of 9) 47151 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 855-28 chr2 116484781 116485161 + 4 NA Intergenic L1MA4A|LINE|L1 1141156 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 680-94 chr5 24760791 24761099 + 4 NA Intergenic L1PB4|LINE|L1 79638 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 638-64 chr2 31693974 31694205 + 4 NA Intergenic HUERS-P3-int|LTR|ERV1 109891 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 738-74 chr9 80625253 80625752 + 4 NA Intergenic Intergenic 650479 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1018-27 chr3 149490265 149490774 + 4 NA intron (NM_004617, intron 3 of 4) MIRc|SINE|MIR 15822 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 932-24 chr5 120350918 120351294 + 4 NA Intergenic MER9a3|LTR|ERVK -113172 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 770-70 chr8 51553348 51553629 + 4 NA intron (NM_144651, intron 4 of 22) MSTD-int|LTR|ERVL-MaLR 255957 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 563-17 chr10 44637533 44637748 + 4 NA Intergenic L1MEg|LINE|L1 -252543 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 588-27 chr12 42940979 42941159 + 4 NA Intergenic L1PA10|LINE|L1 -214246 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 1186-14 chr3 95760665 95761157 + 4 NA Intergenic Intergenic -77718 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 632-61 chr2 164202917 164203158 + 4 NA Intergenic Intergenic 365458 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 808-8 chr10 81899078 81899379 + 4 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 21541 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 693-5 chr1 90228111 90228436 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR 233163 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 553-169 chr4 36319636 36319969 + 4 NA intron (NM_001170700, intron 8 of 9) intron (NM_001170700, intron 8 of 9) 38186 NM_001170700 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 650-9 chr10 101847609 101847920 + 4 NA intron (NM_024541, intron 25 of 25) intron (NM_024541, intron 25 of 25) -3844 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 1185-5 chr4 58502494 58502962 + 4 NA Intergenic Intergenic 33600 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 654-100 chr5 121888174 121888361 + 4 NA Intergenic Intergenic 36385 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 935-25 chr22 28237324 28237728 + 4 NA intron (NM_001145418, intron 5 of 22) L1MEf|LINE|L1 -222343 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 557-39 chr11 128495993 128496289 + 4 NA intron (NM_001143820, intron 3 of 9) intron (NM_001143820, intron 3 of 9) 26169 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 1086-6 chr1 158372520 158373146 + 4 NA Intergenic L1MA4A|LINE|L1 18939 NM_030893 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 560-121 chr3 194901728 194902098 + 4 NA Intergenic Intergenic -133204 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 941-28 chr7 80247893 80248250 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 112287 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 373-89 chr12 50019926 50020082 + 4 NA intron (NM_013277, intron 2 of 18) intron (NM_013277, intron 2 of 18) 5490 NM_001319999 29127 Hs.505469 NM_013277 ENSG00000161800 RACGAP1 CYK4|HsCYK-4|ID-GAP|MgcRacGAP Rac GTPase activating protein 1 protein-coding 766-42 chr20 16150982 16151327 + 4 NA Intergenic L1MC1|LINE|L1 -165272 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 847-28 chr2 14847444 14847920 + 4 NA Intergenic L1MA3|LINE|L1 214965 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 836-20 chr14 25488488 25488889 + 4 NA Intergenic Intergenic -438391 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 514-269 chr7 45680266 45680471 + 4 NA intron (NM_021116, intron 11 of 19) intron (NM_021116, intron 11 of 19) 88650 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 676-74 chr22 29117586 29117870 + 4 NA intron (NM_001039570, intron 3 of 8) intron (NM_001039570, intron 3 of 8) 44693 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 888-21 chr2 98319989 98320331 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR -25995 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 656-119 chr7 55939379 55939642 + 4 NA exon (NM_001366796, exon 7 of 7) exon (NM_001366796, exon 7 of 7) -12367 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 797-46 chr6 62352096 62352556 + 4 NA Intergenic Intergenic -66099 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 536-59 chr12 71275062 71275252 + 4 NA Intergenic Intergenic -117158 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 644-64 chr3 110475926 110476101 + 4 NA Intergenic Tigger13a|DNA|TcMar-Tigger 593946 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 680-29 chr12 115041186 115041575 + 4 NA Intergenic Intergenic -357205 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 615-40 chr14 98480266 98480554 + 4 NA Intergenic Intergenic -231203 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 922-41 chr8 138033515 138033916 + 4 NA intron (NR_161374, intron 2 of 7) LTR84a|LTR|ERVL 49830 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 683-15 chr11 104905334 104905736 + 4 NA non-coding (NR_034078, exon 3 of 5) non-coding (NR_034078, exon 3 of 5) -6865 NR_034066 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 1068-6 chr14 47418843 47419327 + 4 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -75839 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 608-139 chr7 8454133 8454294 + 4 NA intron (NM_152745, intron 2 of 2) L1PA13|LINE|L1 20604 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 481-191 chr3 12174135 12174314 + 4 NA intron (NM_133625, intron 10 of 12) L2a|LINE|L2 -15312 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 3062 chr8 133923090 133924649 + 4 NA Intergenic L2a|LINE|L2 37373 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 672-4 chr1 194556548 194556744 + 4 NA Intergenic L1ME3A|LINE|L1 1251901 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 734-42 chr20 62074384 62074673 + 4 NA Intergenic L1MA7|LINE|L1 -8718 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 1052-5 chr11 25696206 25696713 + 4 NA Intergenic L1PA15-16|LINE|L1 -492664 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 845-27 chr5 15890968 15891378 + 4 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -44009 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 591-43 chr14 87225201 87225460 + 4 NA Intergenic Intergenic 319552 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 535-72 chr14 40178659 40178827 + 4 NA Intergenic L1MB1|LINE|L1 -746243 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 429-232 chr5 44450358 44450562 + 4 NA Intergenic LTR49-int|LTR|ERV1 59822 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 390-240 chr3 72065775 72065892 + 4 NA intron (NR_104116, intron 2 of 6) L2a|LINE|L2 34622 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 787-33 chr4 36279317 36279601 + 4 NA Intergenic Intergenic -2157 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 526-245 chr8 51971027 51971223 + 4 NA Intergenic L1PB3|LINE|L1 -71939 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 705-105 chr8 142245444 142245737 + 4 NA intron (NM_001366901, intron 12 of 13) L1ME3E|LINE|L1 47234 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 957 chr1 34423429 34423767 + 4 NA Intergenic MIRb|SINE|MIR 246096 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 1072-13 chr22 22072762 22073094 + 4 NA Intergenic Intergenic -28994 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 506-239 chr5 127047034 127047193 + 4 NA 3' UTR (NM_001164479, exon 5 of 5) 3' UTR (NM_001164479, exon 5 of 5) -16555 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 571-61 chr17 65828977 65829216 + 4 NA intron (NM_001353129, intron 21 of 26) L1M5|LINE|L1 -2553 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 365-334 chr5 143895902 143896034 + 4 NA Intergenic Intergenic 83807 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 626-148 chr9 73741875 73742059 + 4 NA Intergenic Intergenic 590102 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 851-49 chr8 139568837 139569158 + 4 NA Intergenic LTR16C|LTR|ERVL 134126 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 685-38 chr19 23357775 23358114 + 4 NA 3' UTR (NM_001300951, exon 3 of 3) 3' UTR (NM_001300951, exon 3 of 3) 37527 NM_001300951 7644 Hs.58834 NM_003430 ENSG00000167232 ZNF91 HPF7|HTF10 zinc finger protein 91 protein-coding 764-16 chr11 115221670 115222034 + 4 NA intron (NM_001098517, intron 5 of 8) intron (NM_001098517, intron 5 of 8) -111725 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 792-3 chr1 172815698 172816116 + 4 NA Intergenic L1M4|LINE|L1 156804 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 695-109 chr8 142053957 142054193 + 4 NA Intergenic L1MD1|LINE|L1 -122264 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 434-244 chr6 50466725 50466899 + 4 NA Intergenic L1ME4a|LINE|L1 -246732 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 631-82 chr3 48313543 48313809 + 4 NA intron (NM_001080525, intron 3 of 4) L1MB5|LINE|L1 2783 NR_031749 100313840 NR_031749 ENSG00000252466 MIR2115 - microRNA 2115 ncRNA 902-38 chr8 25669661 25670027 + 4 NA Intergenic MER39B|LTR|ERV1 210611 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 328-330 chr21 35304459 35304572 + 4 NA Intergenic Intergenic -255217 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 863-31 chr4 42887022 42887388 + 4 NA Intergenic L1MA4A|LINE|L1 -6061 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 525-257 chr8 78439643 78439829 + 4 NA Intergenic Intergenic -76604 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 1822 chr2 126385459 126386155 + 4 NA Intergenic L1MD2|LINE|L1 -267822 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 666-128 chrX 89093593 89093843 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 346493 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 679-19 chr11 43231973 43232249 + 4 NA Intergenic Intergenic 37258 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 542-177 chr5 116235695 116235946 + 4 NA intron (NM_001308080, intron 5 of 6) HAL1ME|LINE|L1 -19923 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 338-477 chr6 131725429 131725655 + 4 NA intron (NR_133007, intron 19 of 23) MLT1A0|LTR|ERVL-MaLR -14525 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 616-83 chr2 80192211 80192438 + 4 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 112428 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 616-118 chr4 46474198 46474480 + 4 NA Intergenic Intergenic -84211 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 924-18 chr14 62592487 62592807 + 4 NA Intergenic Intergenic -452674 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1213-15 chr9 29385817 29386382 + 4 NA Intergenic L1MD|LINE|L1 -172498 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 504-3 chr1 81541860 81542031 + 4 NA intron (NR_125943, intron 1 of 3) AluSp|SINE|Alu 15757 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 756-19 chr18 4668936 4669248 + 4 NA Intergenic L1PA15|LINE|L1 -213785 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 536-238 chr8 123583893 123584057 + 4 NA Intergenic Intergenic -42769 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 631-109 chr6 37660179 37660492 + 4 NA intron (NM_153487, intron 2 of 16) L1MEd|LINE|L1 37548 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 667-4 chr1 116744231 116744416 + 4 NA Intergenic HERVIP10B3-int|LTR|ERV1 -10107 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 775-84 chr8 129038246 129038683 + 4 NA Intergenic L1MC2|LINE|L1 -72463 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 675-72 chr5 84944598 84944835 + 4 NA Intergenic L1MA9|LINE|L1 -559836 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 1379-5 chr19 9450354 9451088 + 4 NA Intergenic AluSz|SINE|Alu -15143 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 600 chr1 4718275 4718491 + 4 NA intron (NM_018836, intron 2 of 5) intron (NM_018836, intron 2 of 5) 63774 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 746-38 chr2 61951481 61951872 + 4 NA intron (NM_152516, intron 1 of 2) L1ME1|LINE|L1 46034 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 595-93 chr2 161877242 161877493 + 4 NA intron (NM_001354460, intron 9 of 27) intron (NM_001354460, intron 9 of 27) 196848 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 907-15 chr3 25815153 25815669 + 4 NA Intergenic L1PA16|LINE|L1 25321 NM_017897 54995 Hs.55781 NM_017897 ENSG00000151093 OXSM CEM1|FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 827-12 chr13 31337272 31337618 + 4 NA Intergenic L1P3|LINE|L1 137470 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 1161-2 chr17 26710831 26711393 + 4 NA Intergenic ALR/Alpha|Satellite|centr 378129 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 742 chr1 78752418 78752706 + 4 NA Intergenic Intergenic 102731 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 1125-17 chr9 96712760 96713294 + 4 NA Intergenic LOR1b|LTR|ERV1 -12794 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 798-66 chr8 121829803 121830172 + 4 NA Intergenic L2b|LINE|L2 -188547 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 366-110 chr12 86609004 86609139 + 4 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 136078 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 481-302 chr8 131846867 131847068 + 4 NA Intergenic Intergenic -57126 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 656-31 chr11 132507295 132507594 + 4 NA intron (NM_002545, intron 3 of 6) intron (NM_002545, intron 3 of 6) 223142 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 1586-4 chr7 8354690 8355532 + 4 NA Intergenic Intergenic -78498 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 765-16 chr12 46998200 46998581 + 4 NA Intergenic L1MEc|LINE|L1 -81213 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 1392-5 chr8 92941752 92942328 + 4 NA intron (NM_001171798, intron 1 of 4) L1MA6|LINE|L1 23549 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 555-144 chr4 58125995 58126205 + 4 NA Intergenic Intergenic 410228 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 878-32 chr3 125662597 125662970 + 4 NA Intergenic ALR/Alpha|Satellite|centr -67286 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 709-42 chr2 115385859 115386167 + 4 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 42198 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 782-66 chr7 156015957 156016320 + 4 NA Intergenic Intergenic 53506 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 1151-3 chr11 23712655 23713178 + 4 NA Intergenic AluJb|SINE|Alu -293726 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 851-3 chr10 41718048 41718398 + 4 NA Intergenic ALR/Alpha|Satellite|centr 649822 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 860-2 chr10 7286584 7286949 + 4 NA intron (NM_001029880, intron 4 of 20) MER2|DNA|TcMar-Tigger -99982 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 430-285 chr7 47624262 47624427 + 4 NA intron (NR_108090, intron 2 of 3) intron (NR_108090, intron 2 of 3) 2405 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 942-27 chr4 22997120 22997661 + 4 NA Intergenic THE1B|LTR|ERVL-MaLR 283301 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 883-42 chr8 144030745 144031146 + 4 NA intron (NM_198572, intron 1 of 4) L1MB7|LINE|L1 -18453 NR_158554 392275 NR_158554 SMPD5 MA-nSMase sphingomyelin phosphodiesterase 5 pseudo 1836-2 chrX 58413788 58415036 + 4 NA Intergenic ALR/Alpha|Satellite|centr -503779 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 694-6 chr1 206936355 206936626 + 4 NA intron (NM_002644, intron 4 of 10) Helitron3Na_Mam|RC|Helitron 9976 NM_002644 5284 Hs.497589 NM_002644 ENSG00000162896 PIGR - polymeric immunoglobulin receptor protein-coding 505-26 chr10 43245630 43245877 + 4 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -16014 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 2242 chr8 50249669 50250953 + 4 NA intron (NR_135797, intron 2 of 20) L1MA4A|LINE|L1 86180 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 774-44 chr2 95147940 95148236 + 4 NA 3' UTR (NM_032788, exon 5 of 5) 3' UTR (NM_032788, exon 5 of 5) 11497 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 446-32 chr10 18697482 18697638 + 4 NA Intergenic Intergenic 38129 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 597-123 chr6 151562041 151562269 + 4 NA intron (NM_025059, intron 5 of 10) L1PA17|LINE|L1 68138 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 770-71 chr8 83243916 83244281 + 4 NA Intergenic Intergenic -159660 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 662-58 chr3 10541540 10541757 + 4 NA intron (NM_001353564, intron 1 of 20) L1MD2|LINE|L1 -36062 NM_001683 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 766-69 chr8 79113005 79113281 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie -219045 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 712-52 chr20 55290828 55291163 + 4 NA Intergenic Intergenic -132048 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 968-14 chr3 42274937 42275348 + 4 NA Intergenic MER67A|LTR|ERV1 -8957 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 475-290 chr8 135869261 135869554 + 4 NA Intergenic MIR|SINE|MIR 411951 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 692-65 chr3 93883617 93883834 + 4 NA intron (NM_000313, intron 12 of 14) AluSx4|SINE|Alu 90356 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 581-61 chr17 73627000 73627224 + 4 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 17333 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 631-90 chr4 284259 284576 + 4 NA intron (NM_001137608, intron 3 of 3) L1MB2|LINE|L1 21057 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 1395-3 chr20 6282131 6282769 + 4 NA Intergenic Intergenic -144282 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 606-56 chr16 3226306 3226590 + 4 NA intron (NM_198088, intron 4 of 4) intron (NM_198088, intron 4 of 4) 8710 NM_198088 7752 Hs.632222 NM_003454 ENSG00000010539 ZNF200 - zinc finger protein 200 protein-coding 528-74 chr13 47054256 47054407 + 4 NA Intergenic L1M5|LINE|L1 -157255 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 1338 chr1 78460843 78461315 + 4 NA Intergenic L1PA15|LINE|L1 -29895 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 594-140 chr7 52808720 52809068 + 4 NA Intergenic Intergenic -226739 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 730-82 chr8 136977186 136977551 + 4 NA Intergenic Intergenic 436220 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 610-43 chr13 66184353 66184656 + 4 NA Intergenic MLT2A2|LTR|ERVL -33746 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 634-2 chr1 80122770 80122991 + 4 NA Intergenic Intergenic -412875 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 406-151 chr2 115252672 115252849 + 4 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -56477 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 605-60 chr2 236229338 236229585 + 4 NA intron (NM_212556, intron 3 of 5) L1ME1|LINE|L1 34884 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 589-145 chr7 11418977 11419186 + 4 NA intron (NM_015204, intron 15 of 26) intron (NM_015204, intron 15 of 26) 413117 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 474-147 chr2 118651950 118652125 + 4 NA Intergenic L1MB5|LINE|L1 -49071 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 316-315 chr20 12867997 12868089 + 4 NA intron (NR_109868, intron 10 of 11) L1ME3A|LINE|L1 68920 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 474-65 chr12 82904092 82904315 + 4 NA intron (NM_152588, intron 3 of 11) intron (NM_152588, intron 3 of 11) 217048 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 596-172 chr8 134164739 134164999 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR 278373 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 598-59 chr18 53253033 53253253 + 4 NA intron (NM_005215, intron 12 of 28) intron (NM_005215, intron 12 of 28) 16042 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 728-113 chrX 130408928 130409132 + 4 NA intron (NM_016024, intron 3 of 5) L1ME4a|LINE|L1 7043 NM_016024 51634 Hs.740515 NM_016024 ENSG00000134597 RBMX2 CGI-79|Snu17 RNA binding motif protein X-linked 2 protein-coding 737-70 chr5 140768983 140769347 + 4 NA Intergenic MSTA1|LTR|ERVL-MaLR -16971 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 312-449 chr6 55929876 55930082 + 4 NA Intergenic L2a|LINE|L2 -54389 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 892-12 chr11 114622951 114623311 + 4 NA Intergenic Intergenic -27345 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 730-79 chr8 102190915 102191180 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR 47784 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 1362-6 chr6 65203524 65204173 + 4 NA intron (NM_001292009, intron 12 of 43) L1PA15-16|LINE|L1 -97570 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 1392-3 chr7 4571949 4572614 + 4 NA Intergenic MSTB|LTR|ERVL-MaLR -110014 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 939-29 chr8 36428728 36429252 + 4 NA Intergenic L2a|LINE|L2 -355384 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 839-28 chr21 46590963 46591295 + 4 NA Intergenic L1PB1|LINE|L1 13953 NM_006272 6285 Hs.422181 NM_006272 ENSG00000160307 S100B NEF|S100|S100-B|S100beta S100 calcium binding protein B protein-coding 1263-4 chr19 43845435 43845924 + 4 NA intron (NM_181845, intron 6 of 6) intron (NM_181845, intron 6 of 6) 18358 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 668-45 chr2 36103153 36103453 + 4 NA Intergenic Intergenic 252267 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 320-255 chr2 49963059 49963166 + 4 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) 11091 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 640-112 chr5 163600663 163600893 + 4 NA Intergenic Intergenic 95159 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 520-128 chr18 57424484 57424664 + 4 NA Intergenic Intergenic -10800 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 1110-11 chr20 42193742 42194175 + 4 NA intron (NM_133170, intron 17 of 31) MIRc|SINE|MIR -491525 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 1022-24 chr7 106699127 106699523 + 4 NA Intergenic MER2|DNA|TcMar-Tigger -38167 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 702-44 chr2 52624848 52625092 + 4 NA Intergenic L1MEf|LINE|L1 77645 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 791-45 chr3 19242806 19243264 + 4 NA intron (NM_144633, intron 1 of 15) MIRb|SINE|MIR 71896 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 622-46 chr18 22650757 22650926 + 4 NA Intergenic L1MB7|LINE|L1 135996 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 656-46 chr17 70759989 70760315 + 4 NA Intergenic Intergenic 442027 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 756-50 chr6 64395728 64395967 + 4 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 589011 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 422-228 chr5 3161023 3161215 + 4 NA Intergenic Intergenic -16716 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 655-93 chr4 165979162 165979406 + 4 NA intron (NM_001204760, intron 1 of 9) L1ME3C|LINE|L1 106047 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 573-25 chr10 63445593 63445822 + 4 NA intron (NM_001322258, intron 1 of 24) L2a|LINE|L2 15132 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 1013-5 chr19 56544358 56544696 + 4 NA intron (NM_001308440, intron 2 of 6) MER58B|DNA|hAT-Charlie 5579 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 762-52 chr4 184137944 184138206 + 4 NA intron (NM_153343, intron 2 of 7) Charlie2b|DNA|hAT-Charlie 79798 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 812-26 chr17 73730123 73730397 + 4 NA Intergenic MLT1J2|LTR|ERVL-MaLR -7594 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 984-18 chr7 33551127 33551599 + 4 NA intron (NM_001362679, intron 21 of 21) intron (NM_001362679, intron 21 of 21) -353552 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 780-24 chr17 71358280 71358593 + 4 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat -156257 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 717-5 chr1 71726637 71726901 + 4 NA intron (NM_173808, intron 3 of 6) MLT1K|LTR|ERVL-MaLR 110243 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 782-38 chr20 58600613 58600887 + 4 NA intron (NR_034147, intron 6 of 6) L1MB8|LINE|L1 -34022 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 644-66 chr3 135446113 135446311 + 4 NA Intergenic Charlie15b|DNA|hAT-Charlie -519516 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 658-114 chr7 45965776 45965949 + 4 NA Intergenic Intergenic -44590 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 588-51 chr17 33331602 33331928 + 4 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR -38777 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 516-237 chr7 82586649 82586866 + 4 NA Intergenic Intergenic -142801 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 944-9 chr17 66868859 66869329 + 4 NA intron (NM_145811, intron 1 of 5) AluSz|SINE|Alu 33977 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 356-266 chr2 163258084 163258173 + 4 NA Intergenic Intergenic -419361 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 628-109 chr5 169687253 169687433 + 4 NA intron (NR_156756, intron 8 of 52) intron (NR_156756, intron 8 of 52) 50068 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 634-97 chr22 48259343 48259540 + 4 NA Intergenic Intergenic -14923 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 299-481 chr9 26869456 26869566 + 4 NA intron (NM_001167575, intron 4 of 5) intron (NM_001167575, intron 4 of 5) 23291 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 911-17 chr20 24418053 24418440 + 4 NA Intergenic MER58B|DNA|hAT-Charlie -50953 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 598-157 chrX 34572179 34572389 + 4 NA Intergenic L1PA16|LINE|L1 85001 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 669-64 chr20 43265556 43265901 + 4 NA Intergenic Intergenic -75822 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 735-72 chr5 104017903 104018184 + 4 NA Intergenic L1MB7|LINE|L1 -455254 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 1200-2 chr18 73925062 73925518 + 4 NA Intergenic MIRb|SINE|MIR 222544 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 613-123 chr7 48684670 48685039 + 4 NA Intergenic Intergenic -239693 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 834-5 chr12 10104663 10104978 + 4 NA Intergenic L1PB3|LINE|L1 -5835 NM_001297748 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 1321 chr10 29297301 29297854 + 4 NA intron (NM_032517, intron 3 of 4) Tigger7|DNA|TcMar-Tigger 8507 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 500-191 chr3 150673863 150674035 + 4 NA intron (NM_001308234, intron 11 of 13) intron (NM_001308234, intron 11 of 13) -29615 NR_121675 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 718-36 chr18 14931220 14931534 + 4 NA Intergenic Intergenic -14890 NR_104164 400644 Hs.514732 NR_104164 ENSG00000266554 LINC01443 - long intergenic non-protein coding RNA 1443 ncRNA 1068-7 chr14 53820297 53820986 + 4 NA Intergenic L1MEd|LINE|L1 127843 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 570-54 chr13 102950457 102950692 + 4 NA Intergenic LTR40a|LTR|ERVL 70475 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 723-64 chr6 58438879 58439316 + 4 NA Intergenic ALR/Alpha|Satellite|centr -477651 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 980-12 chr21 27474406 27474805 + 4 NA Intergenic Intergenic -247774 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1145-6 chr3 59699411 59699934 + 4 NA Intergenic Intergenic -41175 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 682-67 chr3 137874863 137875162 + 4 NA Intergenic L1MA1|LINE|L1 103101 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 481-249 chr5 46074820 46075009 + 4 NA Intergenic ALR/Alpha|Satellite|centr -378534 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 524-51 chr13 47227032 47227187 + 4 NA Intergenic Intergenic -330033 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 1134-6 chr15 45242755 45243370 + 4 NA Intergenic LTR14C|LTR|ERVK -9172 NM_004212 9153 Hs.367833 NM_004212 ENSG00000137860 SLC28A2 CNT2|HCNT2|HsT17153|SPNT1 solute carrier family 28 member 2 protein-coding 535-130 chr2 114860137 114860328 + 4 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -26684 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 964-32 chr8 134930748 134931221 + 4 NA Intergenic Intergenic 81049 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 652-94 chr5 24757421 24757689 + 4 NA Intergenic L1PB4|LINE|L1 83028 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 679-85 chr5 7356011 7356388 + 4 NA Intergenic L1MC1|LINE|L1 -8222 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 433-6 chr1 91364391 91364597 + 4 NA intron (NM_001017975, intron 13 of 38) L1MA5A|LINE|L1 40343 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 768-36 chr4 79769961 79770308 + 4 NA Intergenic L1MA9|LINE|L1 -57337 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 576-22 chr10 125596088 125596287 + 4 NA intron (NM_001318133, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 21816 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 563-9 chr1 209260425 209260738 + 4 NA Intergenic Intergenic -64875 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 1199-15 chr6 40007092 40007588 + 4 NA Intergenic LTR40a|LTR|ERVL -72878 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1226-7 chr8 127526321 127526919 + 4 NA Intergenic AluJb|SINE|Alu -44481 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 566-21 chr11 42789526 42789772 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 479720 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 926-17 chr3 38669126 38669473 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -19612 NM_001160160 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 710-90 chr8 50963658 50963918 + 4 NA Intergenic Intergenic 799657 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 735-79 chr8 46289139 46289421 + 4 NA Intergenic ALR/Alpha|Satellite|centr 328363 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 809-26 chr2 114238751 114239083 + 4 NA Intergenic Intergenic -203724 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 498-100 chr16 76954789 76955001 + 4 NA Intergenic Intergenic 85959 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 937-14 chr18 3681139 3681509 + 4 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 77587 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 584-158 chr7 7171006 7171242 + 4 NA Intergenic L1MB4|LINE|L1 -11491 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 798-42 chr4 42885537 42885828 + 4 NA Intergenic L1MA4A|LINE|L1 -7584 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 282-385 chr5 108218989 108219104 + 4 NA intron (NM_001163315, intron 5 of 8) L1MEc|LINE|L1 163052 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 993-11 chr19 51532538 51533017 + 4 NA Intergenic Intergenic -1107 NM_001177549 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 1187-8 chr3 96656178 96656610 + 4 NA Intergenic LTR8A|LTR|ERV1 -158200 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 330-74 chr10 115395908 115396047 + 4 NA intron (NM_207303, intron 20 of 28) intron (NM_207303, intron 20 of 28) 302612 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 780-41 chr3 180837881 180838180 + 4 NA intron (NR_109986, intron 2 of 13) L1PA12|LINE|L1 32148 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 1614-3 chr18 78885139 78886005 + 4 NA Intergenic L1PA16|LINE|L1 -94703 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 729-39 chr2 107534821 107535139 + 4 NA intron (NR_146968, intron 2 of 2) L2|LINE|L2 5561 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 1245-7 chr9 29702337 29702754 + 4 NA Intergenic Intergenic -488944 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1049-15 chr4 74251024 74251724 + 4 NA intron (NM_001144978, intron 6 of 7) intron (NM_001144978, intron 6 of 7) -57096 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 1212-2 chr16 77923727 77924058 + 4 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -98656 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 363-483 chrX 58311884 58312044 + 4 NA Intergenic ALR/Alpha|Satellite|centr -401331 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 1052-21 chr8 4181238 4181571 + 4 NA intron (NM_033225, intron 3 of 69) MER30|DNA|hAT-Charlie 813510 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 654-116 chr7 64061319 64061582 + 4 NA intron (NM_001159522, intron 1 of 3) L1M1|LINE|L1 16016 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 453-291 chr8 132387014 132387183 + 4 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 60164 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 758-37 chr2 32579075 32579328 + 4 NA intron (NM_016252, intron 66 of 73) intron (NM_016252, intron 66 of 73) -4383 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 942-41 chr8 141827999 141828380 + 4 NA Intergenic Intergenic -41876 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 846-12 chr12 133203017 133203332 + 4 NA exon (NM_001165882, exon 6 of 6) exon (NM_001165882, exon 6 of 6) 21679 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 711-24 chr15 68191664 68192178 + 4 NA TTS (NM_001320687) TTS (NM_001320687) 14189 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 1022-2 chr1 176848738 176849097 + 4 NA Intergenic AluSz|SINE|Alu 180528 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 600-39 chr16 2809708 2809908 + 4 NA Intergenic L1M2a|LINE|L1 -7429 NR_073012 10942 Hs.72026 NM_006799 ENSG00000007038 PRSS21 ESP-1|ESP1|TEST1|TESTISIN serine protease 21 protein-coding 571-174 chr8 111915634 111915805 + 4 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 539080 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 474-155 chr2 189996305 189996545 + 4 NA Intergenic L1PB1|LINE|L1 66304 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 495-219 chr6 82433034 82433206 + 4 NA Intergenic Intergenic 68876 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 685-42 chr2 37203814 37204072 + 4 NA 3' UTR (NM_001322373, exon 6 of 6) 3' UTR (NM_001322373, exon 6 of 6) 7447 NR_136316 100505876 Hs.666958 NM_001322373 ENSG00000218739 CEBPZOS CEBPZ-AS1 CEBPZ opposite strand protein-coding 1093-13 chr8 129296623 129297181 + 4 NA Intergenic MIRb|SINE|MIR -55662 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 696-84 chr5 23560518 23560773 + 4 NA Intergenic Intergenic 52990 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 765-53 chr5 18376729 18377003 + 4 NA Intergenic Intergenic 569592 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 512-200 chr4 128177747 128178036 + 4 NA intron (NM_018078, intron 13 of 19) L1ME3C|LINE|L1 109922 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 546-87 chr17 44564722 44564891 + 4 NA Intergenic HUERS-P2-int|LTR|ERV1 7322 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 766-44 chr20 46723699 46724044 + 4 NA intron (NM_030777, intron 1 of 4) MIR|SINE|MIR 14222 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 468-157 chr2 126050771 126050994 + 4 NA Intergenic Intergenic 67103 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 892 chr1 85723453 85723848 + 4 NA Intergenic L1MA4|LINE|L1 -15217 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 488-219 chr5 105596357 105596528 + 4 NA Intergenic L1ME1|LINE|L1 496968 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 596-106 chr2 196651149 196651474 + 4 NA intron (NM_001353339, intron 2 of 22) L1MA7|LINE|L1 11596 NM_001353339 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 808-7 chr10 76484700 76484988 + 4 NA intron (NM_001305581, intron 6 of 6) L1ME3A|LINE|L1 -403200 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 1256-9 chr5 105091804 105092413 + 4 NA Intergenic L1MA2|LINE|L1 -7366 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 776-12 chr11 82489685 82489978 + 4 NA Intergenic L1PB2|LINE|L1 -85918 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 474-58 chr12 14263925 14264242 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -101549 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 564-165 chr5 154664914 154665077 + 4 NA Intergenic MSTB-int|LTR|ERVL-MaLR -17984 NM_001367713 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 303-385 chr5 169156581 169156728 + 4 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 107040 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 1152-3 chr14 51958714 51959230 + 4 NA intron (NM_001243773, intron 3 of 3) L2a|LINE|L2 -30574 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 556-201 chr7 14483316 14483479 + 4 NA intron (NM_001350717, intron 19 of 24) MLT1D-int|LTR|ERVL-MaLR 358053 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 519-32 chr11 49704597 49704794 + 4 NA intron (NR_027044, intron 2 of 6) (A)n|Simple_repeat|Simple_repeat 146167 NR_027044 440040 Hs.655746 NR_027044 ENSG00000205035 LOC440040 - glutamate metabotropic receptor 5 pseudogene pseudo 688-107 chr8 122961215 122961533 + 4 NA intron (NM_001362797, intron 4 of 4) MLT1B|LTR|ERVL-MaLR 64398 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 713-18 chr12 3404374 3404754 + 4 NA intron (NM_001256536, intron 1 of 9) L1ME3A|LINE|L1 23215 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 817-33 chr3 29633395 29633749 + 4 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 300584 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 573-193 chr8 64164484 64164733 + 4 NA intron (NR_125826, intron 2 of 4) (T)n|Simple_repeat|Simple_repeat 203950 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 715-6 chr11 15126120 15126356 + 4 NA intron (NM_001042536, intron 1 of 12) intron (NM_001042536, intron 1 of 12) 11315 NM_001042536 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 688-20 chr11 42185291 42185557 + 4 NA Intergenic Intergenic 68266 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 985 chr1 85639163 85639572 + 4 NA Intergenic L1M4|LINE|L1 58606 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 468-42 chr10 133526111 133526275 + 4 NA Intergenic Intergenic -1170 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 727-97 chrX 38747889 38748085 + 4 NA Intergenic Intergenic -53445 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 422-24 chr1 239508369 239508528 + 4 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) -120625 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 789-33 chr3 67973471 67973854 + 4 NA Intergenic Intergenic -17930 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 627-26 chr14 20096577 20096832 + 4 NA Intergenic L1ME3Cz|LINE|L1 -20764 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 696-22 chr11 98028449 98028831 + 4 NA Intergenic Intergenic -992309 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 1024-16 chr20 14783915 14784365 + 4 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 145378 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 908-23 chr20 33940594 33940916 + 4 NA Intergenic Intergenic -53156 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 795-11 chr10 58902990 58903380 + 4 NA Intergenic L1MEg|LINE|L1 -96333 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 743-39 chr2 115859565 115860021 + 4 NA Intergenic L1M4|LINE|L1 515978 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1288-2 chr11 50662620 50663388 + 4 NA Intergenic ALR/Alpha|Satellite|centr 253857 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 704-68 chr5 79038328 79038561 + 4 NA intron (NR_104003, intron 2 of 9) AluSz6|SINE|Alu 31230 NR_104002 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 559-159 chr6 71588258 71588438 + 4 NA Intergenic Intergenic 167321 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 863-45 chr7 62751653 62752188 + 4 NA Intergenic ALR/Alpha|Satellite|centr 552136 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 779-14 chr11 96456692 96456994 + 4 NA intron (NR_047481, intron 1 of 4) MSTA|LTR|ERVL-MaLR 50034 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 1236-5 chr6 62499766 62500217 + 4 NA Intergenic Intergenic -213764 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 425-124 chr19 31232596 31232799 + 4 NA intron (NR_138036, intron 1 of 4) L1ME2|LINE|L1 65187 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 346-374 chr5 8115385 8115503 + 4 NA Intergenic Intergenic 246296 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 617-128 chr8 37203565 37203774 + 4 NA Intergenic Intergenic 290244 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 633-61 chr2 43019978 43020316 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 19396 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 705-26 chr12 110952280 110952546 + 4 NA intron (NR_135002, intron 3 of 3) L1M5|LINE|L1 5405 NR_135002 105369980 Hs.564357 NR_135001 ENSG00000258240 LOC105369980 - uncharacterized LOC105369980 ncRNA 541-167 chr4 76322193 76322389 + 4 NA intron (NM_001042784, intron 23 of 23) MIRb|SINE|MIR 16265 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 481-243 chr5 30535019 30535358 + 4 NA Intergenic Intergenic 654628 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 474-97 chr16 6139769 6139909 + 4 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 120136 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 784-47 chr4 90878305 90878778 + 4 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 643510 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 660-10 chr10 43034012 43034219 + 4 NA Intergenic L1M4c|LINE|L1 36552 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 1320-8 chr4 36914485 36915138 + 4 NA Intergenic Intergenic -86968 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 611-60 chr17 63579283 63579589 + 4 NA exon (NM_005828, exon 3 of 7) exon (NM_005828, exon 3 of 7) -21459 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 407-57 chr11 101807750 101807892 + 4 NA Intergenic Intergenic -107189 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 844-40 chr2 213305566 213305997 + 4 NA intron (NR_047660, intron 3 of 14) L1MA3|LINE|L1 21317 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 634-136 chr6 80206786 80207099 + 4 NA intron (NR_134945, intron 9 of 10) L1ME3A|LINE|L1 100271 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 1364 chr1 115759337 115759977 + 4 NA intron (NM_001232, intron 1 of 10) intron (NM_001232, intron 1 of 10) 9148 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 438-157 chr22 33961608 33961766 + 4 NA Intergenic L1M5|LINE|L1 -38799 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 764-74 chrX 67129323 67129577 + 4 NA Intergenic Intergenic -414571 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 755-14 chr10 131051829 131052184 + 4 NA Intergenic MER21C|LTR|ERVL -43212 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 841-40 chr7 71926785 71927139 + 4 NA intron (NM_001363460, intron 4 of 5) L1MCa|LINE|L1 410429 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 604-18 chr10 80620884 80621113 + 4 NA intron (NM_207372, intron 6 of 6) intron (NM_207372, intron 6 of 6) -28799 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 834-17 chr18 73214232 73214748 + 4 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 50008 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 648-116 chr5 119218999 119219374 + 4 NA intron (NM_001290321, intron 35 of 43) LTR40b|LTR|ERVL -49573 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 836-58 chr7 52957987 52958260 + 4 NA Intergenic LTR48|LTR|ERV1 -77510 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 1328-3 chr5 107187931 107188628 + 4 NA Intergenic L1ME2|LINE|L1 -177265 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 798-9 chr12 16503443 16503793 + 4 NA Intergenic MER66B|LTR|ERV1 101761 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 810-57 chr8 122332505 122332759 + 4 NA Intergenic Intergenic 236012 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 457-26 chr10 28638178 28638399 + 4 NA Intergenic AluJo|SINE|Alu -39233 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 705-103 chr8 98833370 98833650 + 4 NA intron (NM_001256312, intron 3 of 12) MER4D|LTR|ERV1 -7822 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 664-23 chr10 125197724 125198074 + 4 NA Intergenic L1ME3G|LINE|L1 -36869 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 919-4 chr11 79811913 79812379 + 4 NA Intergenic MIRb|SINE|MIR -371116 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 1366-2 chr5 65163330 65164124 + 4 NA intron (NR_135689, intron 25 of 25) intron (NR_135689, intron 25 of 25) 318193 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 372-110 chr12 41751982 41752167 + 4 NA Intergenic L1MA6|LINE|L1 -12115 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 613-54 chr2 41535179 41535368 + 4 NA Intergenic Intergenic -342282 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 491-268 chr8 129010306 129010686 + 4 NA Intergenic Intergenic -44495 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 913-11 chr15 61467009 61467420 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger -237912 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 743-90 chr9 11456374 11456645 + 4 NA Intergenic Intergenic 843303 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 1322 chr19 37129759 37130301 + 4 NA 3' UTR (NM_144689, exon 5 of 5) 3' UTR (NM_144689, exon 5 of 5) 42406 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 790-47 chr6 150284651 150284939 + 4 NA Intergenic Intergenic -84217 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 517-288 chr9 71139229 71139400 + 4 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -17693 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 890-13 chr16 86424398 86424824 + 4 NA Intergenic Intergenic -78932 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 352-107 chr12 65731005 65731128 + 4 NA Intergenic Intergenic -88694 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 791-52 chr4 33052758 33052978 + 4 NA Intergenic Tigger2a|DNA|TcMar-Tigger 701830 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1492 chr10 108964632 108965264 + 4 NA Intergenic Intergenic -895655 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 583-68 chr17 4067988 4068195 + 4 NA intron (NM_015113, intron 26 of 54) AluJr4|SINE|Alu 74939 NM_015113 23140 Hs.277624 NM_015113 ENSG00000074755 ZZEF1 ZZZ4 zinc finger ZZ-type and EF-hand domain containing 1 protein-coding 843-43 chr8 70143812 70144087 + 4 NA intron (NM_001321711, intron 12 of 21) intron (NM_001321711, intron 12 of 21) -72697 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 823-11 chr13 62479300 62479770 + 4 NA Intergenic L1M4c|LINE|L1 155878 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 709-38 chr2 58817899 58818094 + 4 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 297243 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 442-64 chr13 75149278 75149432 + 4 NA Intergenic L2|LINE|L2 91026 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 1733 chr12 37842154 37842984 + 4 NA Intergenic ALR/Alpha|Satellite|centr -474205 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 498-5 chr1 50283832 50284074 + 4 NA Intergenic MIRb|SINE|MIR 139490 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 684-47 chr18 25395341 25395547 + 4 NA Intergenic L1MEc|LINE|L1 -43278 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 442-151 chr2 227593142 227593329 + 4 NA Intergenic Tigger9b|DNA|TcMar-Tigger 25420 NR_149019 729968 Hs.689550 NR_149019 LOC729968 - spore coat protein SP96 ncRNA 643-65 chr20 58534877 58535139 + 4 NA intron (NR_034147, intron 5 of 6) MLT2C1|LTR|ERVL -19609 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 766-67 chr7 139728783 139729154 + 4 NA intron (NM_001113239, intron 1 of 14) intron (NM_001113239, intron 1 of 14) 49030 NM_022740 28996 Hs.731417 NM_022740 ENSG00000064393 HIPK2 PRO0593 homeodomain interacting protein kinase 2 protein-coding 694-79 chr21 40349306 40349576 + 4 NA intron (NR_073202, intron 5 of 32) intron (NR_073202, intron 5 of 32) -33642 NR_038898 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 1207-7 chr4 56584760 56585306 + 4 NA intron (NM_001256475, intron 6 of 8) ERVL-E-int|LTR|ERVL 54427 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 993-25 chr9 35974546 35974979 + 4 NA Intergenic L1M2|LINE|L1 -16608 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 1037-19 chr8 138475963 138476385 + 4 NA intron (NM_001362965, intron 1 of 19) L1MC1|LINE|L1 21087 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 835-43 chr4 62414797 62415244 + 4 NA Intergenic Intergenic -253255 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1032-7 chr12 118629080 118629551 + 4 NA Intergenic Intergenic 132364 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 626-146 chr8 138189849 138190086 + 4 NA intron (NM_015912, intron 9 of 19) MER83C|LTR|ERV1 -106422 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 454-175 chr2 129695265 129695464 + 4 NA Intergenic L1MB8|LINE|L1 182127 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 743-83 chr7 105954326 105954789 + 4 NA Intergenic L1ME4b|LINE|L1 -8707 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 470-219 chr5 110319216 110319486 + 4 NA Intergenic Intergenic 194564 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 538-258 chr9 93907344 93907517 + 4 NA Intergenic Intergenic 47925 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 475-48 chr11 112413416 112413624 + 4 NA Intergenic MLT1F2|LTR|ERVL-MaLR -68712 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 522-76 chr14 47192737 47192911 + 4 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 150422 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 827-27 chr2 220400261 220400579 + 4 NA Intergenic L1ME3A|LINE|L1 -493855 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 775-85 chr8 136951019 136951464 + 4 NA Intergenic L1ME3B|LINE|L1 420443 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 658-99 chr5 107293756 107294107 + 4 NA Intergenic Intergenic -282917 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 648-119 chr5 151089841 151090190 + 4 NA Intergenic MIRb|SINE|MIR -2330 NM_001252390 10318 Hs.355141 NM_006058 ENSG00000145901 TNIP1 ABIN-1|NAF1|VAN|nip40-1 TNFAIP3 interacting protein 1 protein-coding 688-7 chr1 185537537 185537795 + 4 NA Intergenic Intergenic 90822 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 566-47 chr14 40742532 40742742 + 4 NA Intergenic HERV16-int|LTR|ERVL -212074 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 577-177 chr7 7510052 7510269 + 4 NA intron (NM_001037763, intron 9 of 34) intron (NM_001037763, intron 9 of 34) 25713 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 506-185 chr3 108293636 108293824 + 4 NA Intergenic Intergenic -2760 NM_001282556 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 342-216 chr2 4835259 4835378 + 4 NA Intergenic Intergenic -179096 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 635-53 chr2 75972955 75973229 + 4 NA Intergenic L1PB1|LINE|L1 -262177 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 672-73 chr3 98365044 98365351 + 4 NA Intergenic L1M1|LINE|L1 11343 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 743-36 chr2 77782908 77783110 + 4 NA intron (NR_110288, intron 3 of 3) intron (NR_110288, intron 3 of 3) -132925 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 580-115 chr3 84287611 84287815 + 4 NA Intergenic Intergenic 581862 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 697-30 chr15 83728608 83728855 + 4 NA intron (NM_207517, intron 3 of 29) L1MA3|LINE|L1 74608 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 891-15 chr14 84476832 84477262 + 4 NA Intergenic MIR|SINE|MIR -794885 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 664-38 chr14 55858837 55859157 + 4 NA Intergenic L1PREC2|LINE|L1 -62323 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 685-6 chr10 25278465 25278798 + 4 NA intron (NM_020752, intron 2 of 10) L1MEd|LINE|L1 -102355 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 1157-10 chr3 76140082 76140796 + 4 NA Intergenic MIRb|SINE|MIR -354890 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 490-306 chr8 131270608 131270841 + 4 NA Intergenic Intergenic -229815 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 701-107 chrX 82820247 82820560 + 4 NA Intergenic L1MB5|LINE|L1 -687887 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 577-130 chr4 44066690 44066942 + 4 NA Intergenic Intergenic 49754 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 633-89 chr4 72961360 72961627 + 4 NA Intergenic L1PA15-16|LINE|L1 108223 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 986-13 chr12 127435833 127436407 + 4 NA Intergenic L1MC4|LINE|L1 -96048 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 830-22 chr19 49748908 49749292 + 4 NA intron (NM_021733, intron 2 of 10) intron (NM_021733, intron 2 of 10) 14206 NM_021733 60385 Hs.515858 NM_021733 ENSG00000126467 TSKS PPP1R161|STK22S1|TSKS1|TSSKS testis specific serine kinase substrate protein-coding 861-16 chr2 116540581 116540959 + 4 NA Intergenic MER8|DNA|TcMar-Tigger 1196955 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 859-31 chr5 42500516 42500926 + 4 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) -47322 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 906-23 chr3 116697959 116698278 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -11670 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 708-29 chr15 58254812 58255168 + 4 NA Intergenic Intergenic 116609 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 606-139 chr6 9246339 9246561 + 4 NA Intergenic Intergenic 594241 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 741-56 chr5 100112051 100112328 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR 276065 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 741 chr1 87942480 87942854 + 4 NA Intergenic Intergenic -571012 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 720-69 chr5 67726259 67726591 + 4 NA Intergenic Intergenic -66788 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 484-101 chr18 12972918 12973170 + 4 NA intron (NM_031216, intron 5 of 8) AluJb|SINE|Alu -18318 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 780-70 chr9 137876205 137876534 + 4 NA intron (NR_121583, intron 2 of 3) MLT1L|LTR|ERVL-MaLR -1413 NM_000718 774 Hs.495522 NM_000718 ENSG00000148408 CACNA1B BIII|CACNL1A5|CACNN|Cav2.2|DYT23 calcium voltage-gated channel subunit alpha1 B protein-coding 723-53 chr4 106005542 106005903 + 4 NA intron (NR_125928, intron 3 of 3) LTR33A|LTR|ERVL 16756 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 756-62 chr8 127343232 127343560 + 4 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -57003 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 750-18 chr14 40175234 40175546 + 4 NA Intergenic L1MCa|LINE|L1 -742890 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 1016-12 chr2 184857400 184857879 + 4 NA intron (NM_194250, intron 1 of 3) L1MA8|LINE|L1 259110 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 1010-7 chr22 47785041 47785475 + 4 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 153584 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 292-461 chr9 30259253 30259434 + 4 NA Intergenic Intergenic 149111 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 794-7 chr10 5989736 5990162 + 4 NA Intergenic Intergenic -11208 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 993-9 chr16 9237421 9237997 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR -117879 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 774-45 chr2 115409036 115409323 + 4 NA intron (NM_001321912, intron 4 of 25) L1M4|LINE|L1 65364 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1499-2 chr5 106027454 106028291 + 4 NA Intergenic L1MA5A|LINE|L1 928398 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 581-19 chr10 83548393 83548562 + 4 NA Intergenic Intergenic 128612 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 804-6 chr1 229422589 229422948 + 4 NA Intergenic Intergenic 11328 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 1107-2 chr10 8004951 8005337 + 4 NA intron (NM_031923, intron 4 of 6) L1MEd|LINE|L1 47347 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 1130 chr10 7513059 7513676 + 4 NA Intergenic Intergenic -101881 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 503-67 chr12 39146669 39146874 + 4 NA Intergenic Intergenic -241180 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 640-41 chr16 22688953 22689167 + 4 NA Intergenic L1ME1|LINE|L1 -125102 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 405-162 chr2 163753325 163753512 + 4 NA Intergenic Intergenic -17410 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 574-163 chr7 41016387 41016659 + 4 NA Intergenic Intergenic -36584 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 478-110 chr16 78618199 78618420 + 4 NA intron (NM_001291997, intron 7 of 7) MLT1B|LTR|ERVL-MaLR 518655 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 591-33 chr12 128348767 128349031 + 4 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 54807 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 1291-6 chr9 135639196 135639778 + 4 NA promoter-TSS (NM_182974) promoter-TSS (NM_182974) 53 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 713-46 chr2 197057255 197057522 + 4 NA intron (NM_001367496, intron 16 of 27) L1M5|LINE|L1 -130681 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 986-8 chr10 26365581 26365988 + 4 NA Intergenic Intergenic -72557 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 454-163 chr2 108386640 108386834 + 4 NA intron (NM_001321770, intron 4 of 4) L2a|LINE|L2 8783 NM_006588 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 612-33 chr12 37267678 37267906 + 4 NA Intergenic Intergenic -1048982 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1023-10 chr17 55248982 55249440 + 4 NA Intergenic MIRb|SINE|MIR -15749 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 516-80 chr15 26995867 26996045 + 4 NA intron (NM_001270873, intron 2 of 5) L1M4b|LINE|L1 24775 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 596-11 chr1 201342600 201342849 + 4 NA Intergenic L2|LINE|L2 34956 NM_001001430 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 720-6 chr10 4252587 4252895 + 4 NA Intergenic Intergenic -8829 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 747-31 chr2 114835680 114836043 + 4 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -2313 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 573-123 chr4 32171873 32172075 + 4 NA Intergenic Intergenic -149552 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 862-24 chr3 104579872 104580255 + 4 NA Intergenic Intergenic -786650 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 557-190 chr7 141879846 141880036 + 4 NA Intergenic L1P4a|LINE|L1 -38456 NM_001370403 136242 Hs.98947 NM_001008270 ENSG00000165076 PRSS37 TRYX2 serine protease 37 protein-coding 375-431 chr8 138416457 138416605 + 4 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 80730 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 668-115 chrUn_KI270442v1 31910 32077 + 4 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 906-5 chr1 191407588 191408066 + 4 NA Intergenic Intergenic -179329 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 586-140 chr7 50635303 50635538 + 4 NA intron (NM_001350816, intron 6 of 17) L1PB4|LINE|L1 69881 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 894-3 chr10 9946841 9947091 + 4 NA Intergenic MER90a|LTR|ERV1 -111756 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 1514 chr12 14604073 14604704 + 4 NA intron (NR_120465, intron 2 of 5) L1MA4|LINE|L1 -36505 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 580-2 chr1 60270902 60271188 + 4 NA Intergenic Intergenic -197275 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 700-30 chr14 68423210 68423483 + 4 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 205441 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 711-28 chr18 67033746 67033948 + 4 NA Intergenic Intergenic -47737 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 634-102 chr3 72911653 72911836 + 4 NA intron (NM_001080393, intron 2 of 6) MLT1F|LTR|ERVL-MaLR 23698 NM_001080393 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 688-14 chr10 44279832 44280191 + 4 NA Intergenic L1MC|LINE|L1 -12739 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 409-236 chr5 4932885 4933020 + 4 NA Intergenic L1MA9|LINE|L1 -101407 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 990-2 chr1 247150391 247150838 + 4 NA intron (NM_001297567, intron 3 of 3) L1M5|LINE|L1 21403 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 678-29 chr15 25492449 25492624 + 4 NA Intergenic L1MB7|LINE|L1 -53480 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 664-74 chr3 83582235 83582409 + 4 NA Intergenic L1MA4|LINE|L1 1287253 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 586-72 chr2 46927099 46927386 + 4 NA intron (NM_001288953, intron 2 of 20) L1MEg|LINE|L1 -11130 NM_001171507 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 379-321 chr7 93288982 93289213 + 4 NA intron (NM_001257998, intron 13 of 28) MER67A|LTR|ERV1 56731 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 538-96 chr18 72403729 72404022 + 4 NA Intergenic Intergenic 140467 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 558-172 chr5 39889025 39889171 + 4 NA Intergenic MER2|DNA|TcMar-Tigger -163193 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 968-7 chr15 63963908 63964411 + 4 NA intron (NM_014326, intron 4 of 11) L1MA3|LINE|L1 35885 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 581-24 chr11 29414420 29414633 + 4 NA Intergenic L1ME1|LINE|L1 -179887 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 952-5 chr10 122790796 122791131 + 4 NA intron (NR_003570, intron 22 of 27) MER2|DNA|TcMar-Tigger 34269 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 599-40 chr16 7210740 7211040 + 4 NA intron (NM_018723, intron 4 of 15) L1MA9|LINE|L1 -121955 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 838-7 chr10 107111890 107112164 + 4 NA intron (NM_001206569, intron 1 of 25) L1MA6|LINE|L1 52679 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 661-49 chr2 124930430 124930620 + 4 NA Intergenic Plat_L3|LINE|CR1 905238 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 1032-14 chr4 75832892 75833254 + 4 NA Intergenic Intergenic 69379 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 1154-10 chr8 131530063 131530637 + 4 NA Intergenic Intergenic -373743 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 653-80 chr22 27343613 27343928 + 4 NA Intergenic L1ME1|LINE|L1 33119 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 685-45 chr2 79388997 79389244 + 4 NA Intergenic Intergenic 111724 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 867-11 chr11 21271143 21271453 + 4 NA intron (NM_201551, intron 14 of 18) L1MC1|LINE|L1 601712 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 841-17 chr2 60258446 60258782 + 4 NA Intergenic MIRb|SINE|MIR 124422 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 674-79 chr5 85383830 85384125 + 4 NA Intergenic L1MA4|LINE|L1 -898467 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 599-12 chr10 32845241 32845503 + 4 NA intron (NM_001321115, intron 35 of 43) intron (NM_001321115, intron 35 of 43) 56100 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 730-22 chr18 30228504 30228738 + 4 NA Intergenic L1MA5|LINE|L1 -70289 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 509-148 chr3 52886868 52887069 + 4 NA intron (NM_001198974, intron 1 of 9) L1MC4|LINE|L1 10580 NM_001198974 100526772 NM_001198974 ENSG00000248592 STIMATE-MUSTN1 TMEM110-MUSTN1 STIMATE-MUSTN1 readthrough protein-coding 646-28 chr12 16750062 16750261 + 4 NA Intergenic Intergenic -141947 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 716-84 chr8 9969262 9969443 + 4 NA Intergenic Intergenic -65880 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 1043 chr1 224935365 224935757 + 4 NA intron (NM_001349912, intron 1 of 5) L1MA4|LINE|L1 5886 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 762-4 chr1 190078356 190078578 + 4 NA Intergenic Intergenic 397543 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 486-307 chr9 34533017 34533322 + 4 NA Intergenic MLT1N2|LTR|ERVL-MaLR -10179 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 890-26 chr4 71669213 71669572 + 4 NA Intergenic Intergenic 114687 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 1010-6 chr20 32954607 32955081 + 4 NA intron (NM_001143967, intron 23 of 26) L1ME1|LINE|L1 49589 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 607-46 chr15 67753905 67754084 + 4 NA intron (NM_001206804, intron 19 of 21) L1MB7|LINE|L1 -71515 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 738-63 chr7 29253797 29254043 + 4 NA intron (NM_001293072, intron 1 of 12) AluSg|SINE|Alu -44950 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 892-14 chr14 44375031 44375493 + 4 NA Intergenic L1ME2z|LINE|L1 132021 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 656-76 chr3 25254062 25254373 + 4 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -86585 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 495-259 chr8 121159903 121160124 + 4 NA Intergenic Intergenic -347967 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 850-28 chr22 34887423 34887821 + 4 NA intron (NR_138042, intron 3 of 4) MIRb|SINE|MIR 110294 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 866-46 chr7 34003119 34003505 + 4 NA intron (NM_133468, intron 7 of 15) L1M4|LINE|L1 97773 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 552-197 chr7 11806585 11806749 + 4 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 25531 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 574-80 chr2 103703557 103703773 + 4 NA Intergenic L1MD3|LINE|L1 704667 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 340-210 chr18 2126115 2126283 + 4 NA Intergenic L2c|LINE|L2 445306 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 814-63 chr8 134612783 134613098 + 4 NA intron (NM_020863, intron 3 of 15) intron (NM_020863, intron 3 of 15) 14869 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1089-3 chr13 86031460 86031942 + 4 NA Intergenic Intergenic -232282 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 590-136 chr5 107108954 107109136 + 4 NA Intergenic L1MEg|LINE|L1 -98031 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 818-54 chr6 86752164 86752497 + 4 NA Intergenic MLT1E2|LTR|ERVL-MaLR -185198 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 561-66 chr14 42924561 42924830 + 4 NA Intergenic L1PA14|LINE|L1 1317839 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1012-7 chr22 48260266 48260740 + 4 NA Intergenic Intergenic -13861 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 606 chr1 2838690 2838953 + 4 NA Intergenic L1ME3A|LINE|L1 -37953 NM_001242672 100287898 Hs.632363 NM_001242672 ENSG00000215912 TTC34 - tetratricopeptide repeat domain 34 protein-coding 674-106 chr8 136999491 136999790 + 4 NA Intergenic L1MD2|LINE|L1 413948 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 814-61 chr8 106457445 106457844 + 4 NA intron (NM_001198532, intron 1 of 15) MSTD-int|LTR|ERVL-MaLR 9720 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 834-3 chr10 58674194 58674593 + 4 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -40622 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 868-20 chr2 96377290 96377613 + 4 NA TTS (NM_001281710) TTS (NM_001281710) 41685 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 724-24 chr17 16620058 16620387 + 4 NA TTS (NM_020787) TTS (NM_020787) 33628 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 669-14 chr10 93918221 93918474 + 4 NA Intergenic Intergenic 24369 NR_144337 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 1033-8 chr21 27508799 27509222 + 4 NA Intergenic A-rich|Low_complexity|Low_complexity -213369 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 482-149 chr20 46740894 46741089 + 4 NA Intergenic MLT1J|LTR|ERVL-MaLR 31342 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 768-18 chr14 79215865 79216168 + 4 NA intron (NR_073547, intron 14 of 20) MLT1G3|LTR|ERVL-MaLR 16034 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 997-3 chr10 67682792 67683227 + 4 NA intron (NM_013266, intron 1 of 17) intron (NM_013266, intron 1 of 17) 13186 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 676-72 chr21 29935327 29935593 + 4 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 4536 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 773-38 chr5 116212595 116212954 + 4 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) -42969 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 1096-9 chr2 226180920 226181538 + 4 NA Intergenic Intergenic 38435 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 672-34 chr16 25757213 25757399 + 4 NA intron (NM_006040, intron 1 of 1) L1M4|LINE|L1 65347 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 902-35 chr7 68263301 68263799 + 4 NA Intergenic AluJr|SINE|Alu 243297 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 638-143 chr6 167741429 167741610 + 4 NA Intergenic L1M5|LINE|L1 -54010 NR_149041 441179 Hs.192711 NR_149041 ENSG00000269155 LOC441179 - uncharacterized LOC441179 ncRNA 767-22 chr2 47492005 47492326 + 4 NA Intergenic Intergenic -35372 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 672-28 chr14 80440089 80440422 + 4 NA intron (NR_038355, intron 8 of 8) L1MA3|LINE|L1 -209198 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 385-402 chr9 25503245 25503417 + 4 NA Intergenic Intergenic 175527 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 691-7 chr10 58530366 58530671 + 4 NA intron (NM_001080512, intron 1 of 20) LTR16E2|LTR|ERVL 17646 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 933-13 chr15 49599932 49600339 + 4 NA intron (NM_001330293, intron 3 of 10) L1M3e|LINE|L1 20683 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 904-48 chr9 113040741 113041151 + 4 NA 3' UTR (NM_001282515, exon 4 of 4) 3' UTR (NM_001282515, exon 4 of 4) 15778 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 776-22 chr18 70509045 70509433 + 4 NA Intergenic Intergenic -124648 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 547-8 chr1 168274068 168274281 + 4 NA Intergenic L1PA15|LINE|L1 -6703 NM_005149 9095 Hs.716656 NM_005149 ENSG00000143178 TBX19 TBS19|TPIT|dJ747L4.1 T-box transcription factor 19 protein-coding 1000-19 chr5 62988430 62988910 + 4 NA Intergenic L1PA16|LINE|L1 409851 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 741-11 chr10 83655160 83655494 + 4 NA Intergenic L1MA4|LINE|L1 21762 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1240-3 chr3 96523244 96523756 + 4 NA Intergenic L1PA14|LINE|L1 163536 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 754-48 chr22 34953219 34953583 + 4 NA intron (NR_138042, intron 1 of 4) L2a|LINE|L2 44515 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 775-66 chr5 58938872 58939190 + 4 NA Intergenic MER110-int|LTR|ERV1 60867 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1485-4 chr7 34123212 34123758 + 4 NA intron (NM_133468, intron 14 of 15) MER5B|DNA|hAT-Charlie 217946 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 556-232 chr8 118915566 118915794 + 4 NA Intergenic L1MCc|LINE|L1 36205 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 1126-6 chr19 52372991 52373470 + 4 NA exon (NM_001145434, exon 2 of 4) exon (NM_001145434, exon 2 of 4) 3307 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 1068-18 chr6 3480899 3481284 + 4 NA Intergenic Intergenic -24532 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 1042-7 chr15 97298406 97298824 + 4 NA Intergenic L1PB4|LINE|L1 223196 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 1138-8 chr14 96804283 96804578 + 4 NA intron (NM_003384, intron 1 of 12) intron (NM_003384, intron 1 of 12) 7048 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 602-68 chr2 166616484 166616762 + 4 NA Intergenic L1MCa|LINE|L1 -129652 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 1046-19 chr6 113268893 113269388 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 164307 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 1059-10 chr20 47107757 47108294 + 4 NA intron (NM_172110, intron 9 of 13) L2a|LINE|L2 -58942 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 1050-12 chr5 150981293 150981768 + 4 NA Intergenic AluJb|SINE|Alu -34946 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 674-23 chr12 44399320 44399639 + 4 NA Intergenic Intergenic 476182 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 940-41 chrX 66573259 66573654 + 4 NA Intergenic L1PA14|LINE|L1 42574 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 1715 chr1 195083451 195084170 + 4 NA Intergenic Intergenic 1004905 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 869-24 chr19 28383642 28384053 + 4 NA Intergenic LTR16E1|LTR|ERVL -222841 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 776-57 chr8 79840966 79841437 + 4 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 30536 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 615-131 chr7 119604155 119604515 + 4 NA Intergenic L1P4|LINE|L1 303040 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 593-42 chr14 45450495 45450725 + 4 NA Intergenic L1MA4A|LINE|L1 -197408 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 718-65 chr4 74983207 74983448 + 4 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) -12965 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 580-39 chr12 60415978 60416175 + 4 NA Intergenic Intergenic 726706 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 574-83 chr2 125541873 125542049 + 4 NA Intergenic Intergenic 576024 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 688-83 chr4 45829973 45830186 + 4 NA Intergenic L1PB1|LINE|L1 293975 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 594-23 chr11 31737669 31737889 + 4 NA intron (NM_001288726, intron 10 of 11) L1MB1|LINE|L1 62882 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 556-79 chr17 34704428 34704608 + 4 NA Intergenic Intergenic 123769 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 617-94 chr4 60640955 60641141 + 4 NA Intergenic Intergenic -281571 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 436-176 chr3 7165598 7165772 + 4 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) -271668 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 1123-12 chr3 159024121 159024522 + 4 NA Intergenic L1PA16|LINE|L1 -44931 NM_001197113 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 616-80 chr2 52496447 52496625 + 4 NA Intergenic Intergenic 125888 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 1048 chr1 99288660 99289389 + 4 NA intron (NM_014839, intron 2 of 6) intron (NM_014839, intron 2 of 6) 24732 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 387-142 chr17 63186018 63186206 + 4 NA intron (NM_025185, intron 4 of 25) L1ME3A|LINE|L1 219877 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 810-32 chr3 26008125 26008468 + 4 NA Intergenic Intergenic -134601 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 744-31 chr2 101276194 101276542 + 4 NA 3' UTR (NM_173647, exon 7 of 7) 3' UTR (NM_173647, exon 7 of 7) -3319 NR_003070 692205 Hs.656503 NR_003070 ENSG00000212283 SNORD89 HBII-289 small nucleolar RNA, C/D box 89 snoRNA 1735 chr8 125189387 125190111 + 4 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 97889 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 675-16 chr11 37573769 37574078 + 4 NA Intergenic Intergenic -364678 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 317-25 chr1 171037837 171037976 + 4 NA intron (NM_001163629, intron 20 of 21) L1M5|LINE|L1 -52999 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 1748-2 chr6 50687827 50688870 + 4 NA Intergenic MLT1I|LTR|ERVL-MaLR -25196 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 1319 chr1 87253000 87253643 + 4 NA Intergenic L1PA10|LINE|L1 40652 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 1065-13 chr7 25241378 25241908 + 4 NA Intergenic Intergenic -13157 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 668-49 chr2 80883023 80883323 + 4 NA Intergenic Intergenic 569794 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 743-19 chr12 73366256 73366644 + 4 NA Intergenic L1ME2|LINE|L1 207260 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 865-25 chr2 189941570 189941899 + 4 NA Intergenic L1M3f|LINE|L1 120995 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 1195-6 chr16 83143605 83144166 + 4 NA intron (NM_001220490, intron 3 of 12) Tigger15a|DNA|TcMar-Tigger -153587 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 416-22 chr1 216335205 216335323 + 4 NA intron (NM_206933, intron 4 of 71) L1M4|LINE|L1 88132 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 921-19 chr5 150905995 150906356 + 4 NA Intergenic MER92A|LTR|ERV1 -1192 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 838-5 chr10 43618762 43619121 + 4 NA Intergenic L1MD|LINE|L1 -9876 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 625-63 chr21 26319691 26319967 + 4 NA Intergenic L1ME4a|LINE|L1 -73806 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 786-70 chr8 139693427 139693668 + 4 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 9576 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1226-3 chr2 21991886 21992578 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR -281580 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 726-65 chr5 162840284 162840561 + 4 NA Intergenic L1MA6|LINE|L1 -597149 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 448-283 chr8 81352915 81353112 + 4 NA Intergenic L1MA8|LINE|L1 72477 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 709-33 chr19 27632889 27633229 + 4 NA Intergenic ALR/Alpha|Satellite|centr -160372 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 497-60 chr12 93710041 93710197 + 4 NA intron (NR_110092, intron 2 of 2) MLT1H2|LTR|ERVL-MaLR 27704 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 624-106 chr5 179391817 179392101 + 4 NA Intergenic L1ME2|LINE|L1 -46498 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 742-33 chr17 53868879 53869233 + 4 NA Intergenic L1MDa|LINE|L1 46129 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 463-228 chr5 24709095 24709337 + 4 NA Intergenic Intergenic -64238 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 527-193 chr4 84436248 84436421 + 4 NA Intergenic Intergenic 61900 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 634-129 chr5 175576762 175576962 + 4 NA Intergenic L1ME3B|LINE|L1 -81209 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 983-11 chr21 25236769 25237061 + 4 NA Intergenic L1MB2|LINE|L1 194786 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 568-23 chr11 4100588 4100798 + 4 NA intron (NM_001318064, intron 1 of 17) intron (NM_001318064, intron 1 of 17) 5894 NM_001033 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 678-45 chr18 73884084 73884280 + 4 NA Intergenic Intergenic 263652 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 760-28 chr2 8076588 8076859 + 4 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) -99909 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 642-78 chr4 32051532 32051764 + 4 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -29226 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 557-86 chr2 29622002 29622180 + 4 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -146714 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 1325-7 chr8 134407755 134408357 + 4 NA Intergenic Intergenic -190015 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 608-48 chr16 8485304 8485511 + 4 NA Intergenic LTR88b|LTR|Gypsy? 104431 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1271-7 chr4 94200431 94201058 + 4 NA intron (NR_125922, intron 1 of 8) MLT1H1|LTR|ERVL-MaLR 6812 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 906-31 chr9 5684426 5684847 + 4 NA intron (NM_001206557, intron 2 of 24) L1ME1|LINE|L1 55517 NM_001206557 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 746-20 chr12 89681911 89682191 + 4 NA intron (NM_001366520, intron 1 of 21) L1MC4a|LINE|L1 26787 NM_001366525 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 663-51 chr19 36558384 36558655 + 4 NA intron (NM_001145650, intron 2 of 4) L1M4b|LINE|L1 -14551 NR_110703 101927599 Hs.515376 NR_110703 ENSG00000233527 ZNF529-AS1 - ZNF529 antisense RNA 1 ncRNA 598-19 chr10 30425210 30425373 + 4 NA Intergenic MER41B|LTR|ERV1 -8730 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 629-86 chr4 33565171 33565361 + 4 NA Intergenic L1ME3B|LINE|L1 474627 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 996-10 chr14 21877595 21877934 + 4 NA Intergenic Intergenic -206747 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 882-42 chr8 50233052 50233314 + 4 NA intron (NR_135797, intron 2 of 20) L1MD2|LINE|L1 69052 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 757-51 chr5 150937500 150937869 + 4 NA intron (NR_026867, intron 4 of 4) Tigger6a|DNA|TcMar-Tigger 8900 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 701-48 chr2 236867800 236868166 + 4 NA Intergenic Intergenic 188184 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 521-177 chr4 52736924 52737076 + 4 NA Intergenic L2b|LINE|L2 14425 NM_001242690 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 1006-22 chr5 16311299 16311749 + 4 NA Intergenic Intergenic 129578 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 798-32 chr20 39476919 39477297 + 4 NA Intergenic Intergenic -252360 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 613 chr1 4856348 4856595 + 4 NA Intergenic MLT2C1|LTR|ERVL 201862 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 1088 chr10 112098513 112099012 + 4 NA Intergenic Intergenic 85003 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 762-36 chr2 114439971 114440283 + 4 NA Intergenic Intergenic -2514 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1184-5 chr2 17469429 17470078 + 4 NA Intergenic L1MA8|LINE|L1 48687 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 687-118 chr8 83765717 83766000 + 4 NA Intergenic Intergenic 362100 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 473-171 chr3 28545894 28546088 + 4 NA Intergenic Intergenic -29287 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 625-44 chr2 14808649 14808934 + 4 NA Intergenic THE1B-int|LTR|ERVL-MaLR 176074 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 1027-17 chr8 75227837 75228382 + 4 NA intron (NR_103849, intron 1 of 1) intron (NR_103849, intron 1 of 1) 50372 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 705-54 chr2 112204351 112204651 + 4 NA Intergenic L1M4|LINE|L1 50541 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 766-8 chr11 24727115 24727360 + 4 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 230184 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 1245-5 chr5 26858773 26859299 + 4 NA Intergenic Intergenic 179550 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 889-27 chr4 41725998 41726413 + 4 NA Intergenic Intergenic 22765 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 559-2 chr1 56996337 56996615 + 4 NA 3' UTR (NM_001365792, exon 15 of 15) 3' UTR (NM_001365792, exon 15 of 15) -30336 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 682-97 chr7 159213162 159213596 + 4 NA Intergenic Intergenic -68422 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 720-29 chr14 67879284 67879519 + 4 NA intron (NM_133509, intron 5 of 10) MLT2C1|LTR|ERVL 55809 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 492-266 chr8 122032157 122032384 + 4 NA Intergenic Intergenic -390830 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 835-20 chr16 81970985 81971339 + 4 NA Intergenic L1MB1|LINE|L1 40308 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 762-20 chr13 92488884 92489266 + 4 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -1088 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 467-179 chr3 60846491 60846652 + 4 NA intron (NM_001320900, intron 4 of 9) intron (NM_001320900, intron 4 of 9) -228701 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 576-172 chr8 119272658 119272862 + 4 NA Intergenic L1MC1|LINE|L1 -25903 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 685-14 chr11 42961651 42961923 + 4 NA Intergenic MSTD-int|LTR|ERVL-MaLR 307582 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 432-135 chr2 121015621 121015774 + 4 NA Intergenic L1MB5|LINE|L1 223416 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 288-73 chr11 103118741 103118833 + 4 NA intron (NM_001377, intron 6 of 88) intron (NM_001377, intron 6 of 88) 9361 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 315-206 chr19 28101109 28101269 + 4 NA Intergenic Intergenic -307249 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 1194-2 chr17 62851444 62851858 + 4 NA Intergenic Intergenic 43149 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 1207-6 chr3 90637756 90638236 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1530375 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1165-12 chr8 126264808 126265304 + 4 NA Intergenic MLT1J2|LTR|ERVL-MaLR -60439 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 884-10 chr15 68119686 68120071 + 4 NA intron (NM_016166, intron 2 of 13) L1MEc|LINE|L1 65302 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 869-16 chr12 118993343 118993745 + 4 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 12003 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 485-299 chr8 137734406 137734639 + 4 NA Intergenic Intergenic -320934 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 620-109 chr5 39883104 39883334 + 4 NA Intergenic Intergenic -169072 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 922-4 chr10 107090848 107091248 + 4 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 73658 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 640-105 chr5 13435032 13435352 + 4 NA Intergenic Intergenic -402306 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 1017-11 chr2 21682708 21683340 + 4 NA Intergenic L1MB3|LINE|L1 27628 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 518-275 chr7 49530702 49530856 + 4 NA Intergenic Tigger6a|DNA|TcMar-Tigger -242859 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 628-46 chr14 69208641 69208853 + 4 NA intron (NM_001193360, intron 2 of 9) intron (NM_001193360, intron 2 of 9) 16981 NM_001193363 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 690-102 chr8 129184702 129185069 + 4 NA Intergenic L1MB7|LINE|L1 56355 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 657-77 chr5 35782187 35782467 + 4 NA intron (NM_024867, intron 30 of 36) intron (NM_024867, intron 30 of 36) -74564 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 906-2 chr1 91441113 91441438 + 4 NA Intergenic Intergenic -36438 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 682-51 chr2 96375931 96376155 + 4 NA 3' UTR (NM_001281710, exon 18 of 18) 3' UTR (NM_001281710, exon 18 of 18) 40277 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 761-58 chr5 144676158 144676369 + 4 NA Intergenic L1MB5|LINE|L1 470872 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 1072-12 chr21 29971725 29972404 + 4 NA Intergenic L1ME1|LINE|L1 -32012 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 1291-4 chr8 89455867 89456191 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 301682 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 589-79 chr20 17258552 17258765 + 4 NA intron (NM_001201529, intron 1 of 10) L1PA14|LINE|L1 31618 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 1267-5 chr19 37611303 37611844 + 4 NA exon (NM_001172226, exon 4 of 4) exon (NM_001172226, exon 4 of 4) 16697 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 965-6 chr16 83537443 83537884 + 4 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 29317 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 540-135 chr22 31024520 31024839 + 4 NA Intergenic L1M4|LINE|L1 55468 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 536-112 chr2 37003704 37003868 + 4 NA intron (NM_019024, intron 30 of 35) intron (NM_019024, intron 30 of 35) -37250 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 638-59 chr18 4648086 4648358 + 4 NA Intergenic L1MB3|LINE|L1 -192915 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 699-72 chr3 94425509 94425802 + 4 NA Intergenic L1MEg|LINE|L1 362594 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 1082-8 chr2 40940428 40940951 + 4 NA Intergenic Intergenic -428254 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 925-17 chr2 101127407 101127842 + 4 NA intron (NM_001102426, intron 1 of 19) AluJr|SINE|Alu 23823 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 1189-5 chr7 34696588 34697073 + 4 NA intron (NM_001300934, intron 2 of 6) L1MEg|LINE|L1 38591 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 636-117 chr5 126955672 126955944 + 4 NA intron (NM_178450, intron 1 of 4) L1ME3Cz|LINE|L1 74750 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 1192-8 chr5 16092635 16093265 + 4 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 86841 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 549-165 chr5 56703726 56703889 + 4 NA Intergenic Intergenic 69064 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 587-80 chr2 160804835 160804999 + 4 NA Intergenic L1M4b|LINE|L1 -311110 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 652-22 chr10 131286908 131287137 + 4 NA intron (NM_174937, intron 3 of 11) MER33|DNA|hAT-Charlie 24699 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 744-5 chr1 118550414 118550724 + 4 NA Intergenic L1PA14|LINE|L1 -365341 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 607-76 chr2 79601042 79601302 + 4 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 48187 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 680-86 chr4 42160439 42160655 + 4 NA Intergenic Intergenic -7892 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 580-96 chr2 196584755 196584953 + 4 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 8129 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 903-29 chr5 2975792 2976171 + 4 NA Intergenic L1M5|LINE|L1 58127 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 688-94 chr6 62640398 62640723 + 4 NA Intergenic Intergenic -354333 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 1286 chr1 118762085 118762691 + 4 NA Intergenic L1MA7|LINE|L1 225955 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 736-21 chr12 60865395 60865601 + 4 NA Intergenic AluSz6|SINE|Alu 1176128 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 664-126 chr9 135648610 135648889 + 4 NA Intergenic LTR9D|LTR|ERV1 -9209 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 763-39 chr3 4849419 4849622 + 4 NA Intergenic Intergenic 56981 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 434-45 chr10 115997629 115997786 + 4 NA Intergenic Intergenic 197082 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 1251-9 chr9 126099997 126100587 + 4 NA Intergenic L1MC5|LINE|L1 175623 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 586-87 chr20 24702992 24703319 + 4 NA Intergenic Intergenic 233194 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 1367 chr2 184858977 184859449 + 4 NA intron (NM_194250, intron 1 of 3) L1MA8|LINE|L1 260684 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 962-24 chr9 82145054 82145573 + 4 NA Intergenic MLT1H2|LTR|ERVL-MaLR 156541 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 1056-3 chr12 71322016 71322464 + 4 NA Intergenic L1MA10|LINE|L1 -117558 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 1039-20 chr8 78785857 78786254 + 4 NA intron (NM_001199886, intron 2 of 4) L1MC1|LINE|L1 19408 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 454-67 chr12 9330374 9330632 + 4 NA Intergenic L1ME3A|LINE|L1 -36961 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 660-105 chr8 46046738 46046935 + 4 NA Intergenic ALR/Alpha|Satellite|centr 570807 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 652-102 chr6 61268177 61268454 + 4 NA Intergenic Intergenic -305815 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 413-76 chr13 53840808 53840993 + 4 NA intron (NR_047488, intron 3 of 5) MLT1E3|LTR|ERVL-MaLR 25481 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 584-82 chr2 147418902 147419114 + 4 NA Intergenic Intergenic -425509 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 1329-3 chr7 4852095 4852613 + 4 NA intron (NM_018059, intron 2 of 14) MLT1E3-int|LTR|ERVL-MaLR 9676 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 884-46 chr7 72092051 72092349 + 4 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 245191 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 761-80 chr9 120279832 120280127 + 4 NA Intergenic MIRb|SINE|MIR -34929 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 593-18 chr10 65776509 65776678 + 4 NA Intergenic L1MB8|LINE|L1 205168 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 531-148 chr3 4817332 4817553 + 4 NA intron (NM_001168272, intron 58 of 60) L1MC4|LINE|L1 -65852 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 1183-8 chr22 34315446 34316109 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -392889 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 843-24 chr2 107638772 107639141 + 4 NA Intergenic Intergenic 109537 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 1256-2 chr13 92737073 92737485 + 4 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -15665 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 740-20 chr11 109897604 109897889 + 4 NA Intergenic Intergenic -195646 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 850-34 chr4 106744731 106745036 + 4 NA Intergenic L1ME3Cz|LINE|L1 291430 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 771-21 chr13 59392343 59392673 + 4 NA Intergenic Intergenic -620210 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 581-121 chr4 124912678 124912926 + 4 NA Intergenic L1MA9|LINE|L1 -200070 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 675-66 chr4 73531265 73531570 + 4 NA Intergenic Tigger15a|DNA|TcMar-Tigger 22614 NR_046377 728040 Hs.640574 NR_046377 ENSG00000250436 LINC02499 - long intergenic non-protein coding RNA 2499 ncRNA 368-158 chr15 38090560 38090657 + 4 NA Intergenic Intergenic -17618 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 671-73 chr4 159662053 159662317 + 4 NA Intergenic L1MDa|LINE|L1 115599 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 520-12 chr1 88437353 88437563 + 4 NA Intergenic L1MA1|LINE|L1 -246686 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 659-42 chr17 71122080 71122332 + 4 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 79973 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 712-60 chr3 98293235 98293423 + 4 NA Intergenic HAL1ME|LINE|L1 10441 NM_001005482 79310 Hs.554711 NM_001005482 ENSG00000197938 OR5H2 OR3-10 olfactory receptor family 5 subfamily H member 2 protein-coding 566-16 chr10 95752988 95753308 + 4 NA TTS (NR_038444) TTS (NR_038444) -2504 NM_001164181 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 703-4 chr1 185696981 185697269 + 4 NA Intergenic Intergenic -37266 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 1198-9 chr5 51950717 51951467 + 4 NA Intergenic Intergenic -56939 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 873-8 chr12 34674587 34675099 + 4 NA Intergenic ALR/Alpha|Satellite|centr 652347 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 778-42 chr20 56884203 56884493 + 4 NA Intergenic MER41A|LTR|ERV1 255042 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 775-87 chr9 28943125 28943513 + 4 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -54364 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 1220 chr12 37963689 37964393 + 4 NA Intergenic ALR/Alpha|Satellite|centr -352733 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 575-36 chr12 3850146 3850378 + 4 NA intron (NM_020367, intron 1 of 7) L1M4b|LINE|L1 23137 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 1451 chr12 133061679 133062248 + 4 NA 3' UTR (NM_003428, exon 5 of 5) 3' UTR (NM_003428, exon 5 of 5) -18240 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 1681-2 chr2 24114443 24115063 + 4 NA TTS (NM_199346) TTS (NM_199346) 8581 NM_199346 375189 Hs.442718 NM_199346 ENSG00000176732 PFN4 - profilin family member 4 protein-coding 642-41 chr17 52623658 52623899 + 4 NA Intergenic Intergenic 233256 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 704-28 chr14 85423216 85423404 + 4 NA Intergenic MamGypsy2-I|LTR|Gypsy 29395 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 541-38 chr11 115937038 115937207 + 4 NA Intergenic Intergenic -176922 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 415-122 chr2 50919350 50919558 + 4 NA 3' UTR (NM_001330081, exon 6 of 6) 3' UTR (NM_001330081, exon 6 of 6) 112678 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 484-61 chr14 49286073 49286305 + 4 NA Intergenic Intergenic 300191 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 975-7 chr16 8323721 8324188 + 4 NA Intergenic MIRc|SINE|MIR 265884 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 606-144 chr6 168465294 168465565 + 4 NA intron (NM_001166412, intron 1 of 12) intron (NM_001166412, intron 1 of 12) 24245 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 964-2 chr1 179488895 179489370 + 4 NA intron (NR_073544, intron 17 of 25) Charlie7|DNA|hAT-Charlie 86816 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 867-37 chr5 35072822 35073265 + 4 NA intron (NM_001204314, intron 2 of 6) intron (NM_001204314, intron 2 of 6) -25094 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 629-115 chr7 7459314 7459597 + 4 NA intron (NM_001037763, intron 15 of 34) intron (NM_001037763, intron 15 of 34) 76418 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 402-139 chr2 33701206 33701334 + 4 NA Intergenic L1PA13|LINE|L1 -5616 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 1013-20 chr8 137063351 137063719 + 4 NA Intergenic Tigger19b|DNA|TcMar-Tigger 350053 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 762-58 chr5 155939061 155939280 + 4 NA Intergenic L1MA8|LINE|L1 -387587 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 615-48 chr15 91879407 91879683 + 4 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 25241 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 488-59 chr12 5411016 5411255 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -20973 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 1302-3 chr17 26865963 26866569 + 4 NA Intergenic (GAATG)n|Satellite|Satellite 222975 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 544-86 chr16 62494837 62495006 + 4 NA Intergenic MER74B|LTR|ERVL -458483 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 650-96 chr5 119682566 119682895 + 4 NA Intergenic Intergenic 53171 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 778-63 chr7 39698058 39698423 + 4 NA intron (NM_005402, intron 4 of 4) MLT1A|LTR|ERVL-MaLR -35328 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 895-25 chr20 42029611 42030090 + 4 NA Intergenic Intergenic -411473 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 433-119 chr18 74641997 74642158 + 4 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 11114 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 798-60 chr7 17461122 17461521 + 4 NA intron (NR_110015, intron 2 of 2) intron (NR_110015, intron 2 of 2) 86404 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 964-26 chr5 167679457 167679976 + 4 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -75213 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 1284-4 chr16 8392634 8393095 + 4 NA Intergenic MER58B|DNA|hAT-Charlie 196974 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1202-9 chr9 79896719 79897222 + 4 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) 72440 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 784-11 chr10 80063011 80063376 + 4 NA intron (NR_027432, intron 1 of 3) MER4D1|LTR|ERV1 -15453 NM_001270371 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 562-92 chr19 37638901 37639101 + 4 NA intron (NM_001320666, intron 5 of 5) intron (NM_001320666, intron 5 of 5) 16464 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 1046-10 chr2 107478195 107478657 + 4 NA Intergenic L1M4|LINE|L1 -50993 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 480-274 chr7 52409723 52409976 + 4 NA Intergenic Intergenic -625784 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 502-219 chr5 37787958 37788135 + 4 NA Intergenic Intergenic 46776 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 904-7 chr11 84001865 84002404 + 4 NA intron (NM_001142699, intron 11 of 27) L1MA4A|LINE|L1 271146 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 798-29 chr2 116438942 116439314 + 4 NA Intergenic Intergenic 1095313 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1269-7 chr22 48729394 48729979 + 4 NA intron (NM_001082967, intron 3 of 3) L1MB8|LINE|L1 -50609 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 1147-5 chr7 29026204 29026774 + 4 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 46522 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 1181-12 chr4 37006908 37007562 + 4 NA intron (NR_134669, intron 1 of 1) intron (NR_134669, intron 1 of 1) 5456 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 862-26 chr4 88381115 88381485 + 4 NA intron (NM_001165136, intron 1 of 21) MER34A|LTR|ERV1 2561 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 1235-10 chr9 137947261 137947818 + 4 NA promoter-TSS (NR_132977) promoter-TSS (NR_132977) -479 NR_132978 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 881-41 chr8 138128982 138129434 + 4 NA TTS (NM_001362965) TTS (NM_001362965) -45663 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 584-118 chr4 86666475 86666726 + 4 NA intron (NM_080685, intron 2 of 47) intron (NM_080685, intron 2 of 47) 72285 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 380-218 chr20 41868554 41868710 + 4 NA Intergenic L1MDa|LINE|L1 -250255 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 1044-14 chr21 21492034 21492544 + 4 NA intron (NM_001352592, intron 16 of 18) intron (NM_001352592, intron 16 of 18) 245030 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 988-24 chr4 26099859 26100544 + 4 NA Intergenic MLT2B4|LTR|ERVL 186009 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 1031-5 chr14 69275647 69276058 + 4 NA intron (NM_020692, intron 1 of 15) AluJr|SINE|Alu 15694 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 687-67 chr2 182277454 182277774 + 4 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -35551 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 526-224 chr7 7280866 7281213 + 4 NA Intergenic LTR19A|LTR|ERV1 25885 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 630-58 chr2 114970405 114970707 + 4 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -94017 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 524-11 chr1 150461378 150461514 + 4 NA intron (NM_015203, intron 9 of 10) L1ME4a|LINE|L1 -25973 NM_001271895 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 810-37 chr4 123491989 123492318 + 4 NA Intergenic L1MEd|LINE|L1 92613 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 462-130 chr2 14744008 14744169 + 4 NA Intergenic L2b|LINE|L2 111371 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 346-430 chr6 90265397 90265561 + 4 NA intron (NM_021813, intron 2 of 8) intron (NM_021813, intron 2 of 8) 31364 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 885-7 chr12 34660472 34660874 + 4 NA Intergenic ALR/Alpha|Satellite|centr 638177 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 822-46 chr5 8132643 8132900 + 4 NA Intergenic Intergenic 263623 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 1210-3 chr11 39551449 39552051 + 4 NA Intergenic Intergenic 741380 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1791 chr19 37565723 37566553 + 4 NA exon (NM_016536, exon 4 of 4) exon (NM_016536, exon 4 of 4) 14764 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 408-32 chr1 228889701 228889896 + 4 NA Intergenic L1M5|LINE|L1 154319 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 896-25 chr4 45705873 45706387 + 4 NA Intergenic MER47A|DNA|TcMar-Tigger 417924 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 667-123 chr8 138137488 138137775 + 4 NA intron (NM_015912, intron 18 of 19) intron (NM_015912, intron 18 of 19) -54086 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 1113-4 chr4 66303969 66304304 + 4 NA Intergenic L1M4|LINE|L1 27312 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 973-10 chr18 52163807 52164218 + 4 NA Intergenic L1MB8|LINE|L1 -176185 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 746-81 chr8 89270093 89270281 + 4 NA Intergenic Intergenic 487524 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 1035 chr1 43495174 43495599 + 4 NA Intergenic L2a|LINE|L2 -30651 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 1628-2 chr3 28153178 28154265 + 4 NA Intergenic L1MC5a|LINE|L1 -87898 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 727-35 chr14 84300794 84301103 + 4 NA Intergenic Intergenic -970984 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 867-18 chr17 61130460 61130893 + 4 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 237028 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 626-47 chr17 15708282 15708614 + 4 NA intron (NM_020652, intron 5 of 5) L1ME3A|LINE|L1 8696 NM_001288643 57335 Hs.585799 NM_020652 ENSG00000187607 ZNF286A ZNF286 zinc finger protein 286A protein-coding 1355-2 chr15 67653651 67654234 + 4 NA intron (NM_001206804, intron 11 of 21) L1MB7|LINE|L1 104848 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 551-44 chr12 54935213 54935380 + 4 NA Intergenic L3b|LINE|CR1 38436 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 640-9 chr10 25559569 25559901 + 4 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -91977 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 702-46 chr2 115783482 115783726 + 4 NA intron (NM_001321912, intron 18 of 25) intron (NM_001321912, intron 18 of 25) 439789 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 596-77 chr17 52924525 52924723 + 4 NA Intergenic MER61-int|LTR|ERV1 -60881 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 735-3 chr1 67061860 67062053 + 4 NA Intergenic ERVL-E-int|LTR|ERVL -7808 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 857-30 chr2 239582555 239582863 + 4 NA Intergenic L1ME4a|LINE|L1 -180151 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 851-41 chr7 70890630 70890916 + 4 NA Intergenic LTR27B|LTR|ERV1 -241371 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 761-64 chr7 63871632 63871972 + 4 NA Intergenic AluSg|SINE|Alu -127004 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 881-40 chr8 114729430 114729846 + 4 NA Intergenic L2a|LINE|L2 938375 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 562-70 chr15 96084933 96085123 + 4 NA intron (NR_158193, intron 6 of 7) intron (NR_158193, intron 6 of 7) 42813 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 1505-6 chr8 143419244 143419704 + 4 NA TTS (NR_126358) TTS (NR_126358) 1795 NR_126358 104326051 Hs.202140 NR_126358 ENSG00000254338 MAFA-AS1 TCONS_00014882 MAFA antisense RNA 1 ncRNA 579-5 chr1 160957423 160957606 + 4 NA Intergenic Intergenic -2705 NM_080878 142683 Hs.385631 NM_080878 ENSG00000158764 ITLN2 HL-2|HL2 intelectin 2 protein-coding 596-145 chr7 17572062 17572238 + 4 NA Intergenic L1MEc|LINE|L1 -13241 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 1540-2 chr12 130229866 130230632 + 4 NA Intergenic L1MC5|LINE|L1 67790 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 810-45 chr5 102624313 102624665 + 4 NA intron (NR_103755, intron 1 of 2) intron (NR_103755, intron 1 of 2) 43121 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 630-62 chr2 147957277 147957597 + 4 NA intron (NM_001190881, intron 3 of 10) intron (NM_001190881, intron 3 of 10) 63300 NM_001190882 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 397-92 chr14 60142195 60142304 + 4 NA 3' UTR (NM_001330177, exon 11 of 11) 3' UTR (NM_001330177, exon 11 of 11) 23149 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 706-31 chr16 83722950 83723190 + 4 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 80906 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 1099-14 chr2 167459029 167459600 + 4 NA Intergenic L1MB3|LINE|L1 271942 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 364-168 chr17 54737084 54737333 + 4 NA Intergenic Intergenic -163483 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 576-147 chr6 45768329 45768613 + 4 NA Intergenic L4_C_Mam|LINE|RTE-X 169126 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 616-26 chr11 83326702 83326909 + 4 NA Intergenic L1MA4A|LINE|L1 -40398 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 1327-2 chr11 115034514 115035183 + 4 NA Intergenic L1MC4|LINE|L1 -298729 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 756 chr1 88406258 88406556 + 4 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -277737 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 503-201 chr3 107223124 107223322 + 4 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 17415 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 380-251 chr3 96039700 96039830 + 4 NA Intergenic MLT1A0|LTR|ERVL-MaLR -320199 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 470-70 chr14 47954196 47954401 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger -159284 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 632-89 chr4 162958289 162958614 + 4 NA Intergenic Intergenic 135177 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 728-7 chr1 219850251 219850545 + 4 NA Intergenic L1PB2|LINE|L1 78253 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 444-274 chr8 137612876 137613055 + 4 NA Intergenic Intergenic -199377 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 800-22 chr14 86338253 86338625 + 4 NA Intergenic L1PREC2|LINE|L1 403761 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 1495-2 chr10 71111006 71111539 + 4 NA Intergenic L1M3f|LINE|L1 -101298 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 2031 chr18 76340597 76341356 + 4 NA Intergenic LTR33B|LTR|ERVL 131466 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 852-46 chr7 50059121 50059447 + 4 NA intron (NM_007009, intron 3 of 7) L2a|LINE|L2 33962 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 416-345 chr8 137291071 137291283 + 4 NA Intergenic L2a|LINE|L2 122411 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1441 chr11 48719592 48720108 + 4 NA Intergenic ALR/Alpha|Satellite|centr 231057 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 851-22 chr2 124612191 124612603 + 4 NA intron (NM_130773, intron 12 of 23) intron (NM_130773, intron 12 of 23) 587110 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 778-35 chr2 33774883 33775175 + 4 NA intron (NR_126403, intron 1 of 5) L1M6|LINE|L1 -46812 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 676-90 chr4 14213798 14214062 + 4 NA Intergenic L1PA16|LINE|L1 101962 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 294-402 chr6 41391506 41391725 + 4 NA Intergenic Charlie4|DNA|hAT-Charlie 56007 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 584-135 chr5 79280187 79280483 + 4 NA intron (NM_152405, intron 2 of 10) intron (NM_152405, intron 2 of 10) 44204 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 635-47 chr19 29633574 29633737 + 4 NA Intergenic Intergenic 27372 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 632-44 chr19 22482876 22483061 + 4 NA intron (NR_160728, intron 1 of 1) intron (NR_160728, intron 1 of 1) 44981 NR_110427 101929124 Hs.589610 NR_110427 ENSG00000260599 LOC101929124 - uncharacterized LOC101929124 ncRNA 991-13 chr21 14151814 14152392 + 4 NA intron (NM_198996, intron 8 of 9) AluSc8|SINE|Alu 54846 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 852-4 chr1 178304905 178305127 + 4 NA intron (NM_170692, intron 3 of 17) L1M1|LINE|L1 -36435 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 581-119 chr4 119131252 119131486 + 4 NA Intergenic Intergenic -4415 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 231-17 chr1 158585595 158585668 + 4 NA Intergenic Intergenic -5732 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 701-98 chr8 116277031 116277248 + 4 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 47920 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 738-73 chr8 134608056 134608480 + 4 NA intron (NM_020863, intron 5 of 15) intron (NM_020863, intron 5 of 15) 10197 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 927-18 chr5 72048929 72049332 + 4 NA Intergenic Intergenic -58345 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 975-24 chr9 88251516 88252034 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -113294 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 897-9 chr11 28850099 28850551 + 4 NA Intergenic Intergenic -372777 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 1662 chr19 29360522 29361185 + 4 NA intron (NR_040029, intron 9 of 9) L1MA8|LINE|L1 -147702 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1169-10 chr9 71214239 71214953 + 4 NA intron (NM_001366143, intron 1 of 25) L2b|LINE|L2 -92975 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 997-10 chr2 41334367 41334987 + 4 NA Intergenic L1ME5|LINE|L1 -542878 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 998-4 chr10 44464763 44465402 + 4 NA Intergenic Intergenic -79985 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 974 chr11 39305896 39306335 + 4 NA Intergenic Intergenic 657257 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 655-101 chr5 150943376 150943604 + 4 NA intron (NR_026867, intron 2 of 4) intron (NR_026867, intron 2 of 4) 3094 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 744-18 chr12 94420723 94421020 + 4 NA intron (NM_001368042, intron 1 of 5) L1ME3A|LINE|L1 38996 NM_001346457 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 1003-19 chr6 62559595 62560072 + 4 NA Intergenic Intergenic -273606 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 703-66 chr4 65240721 65241092 + 4 NA Intergenic Intergenic -236406 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 901-24 chr4 105096788 105097292 + 4 NA Intergenic L1M4|LINE|L1 -48835 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 752-29 chr18 9264285 9264491 + 4 NA intron (NM_001204056, intron 9 of 11) intron (NM_001204056, intron 9 of 11) -70385 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 620-81 chr22 46189890 46190139 + 4 NA intron (NM_001362872, intron 3 of 8) intron (NM_001362872, intron 3 of 8) 39219 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 455-127 chr2 104218039 104218279 + 4 NA Intergenic MLT1G1|LTR|ERVL-MaLR 190173 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 533-192 chr5 153272511 153272665 + 4 NA Intergenic Intergenic -217936 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 626-120 chr5 162838704 162839022 + 4 NA Intergenic Intergenic -598708 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 636-126 chr6 52166317 52166621 + 4 NA Intergenic L1ME4a|LINE|L1 -15446 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 855-18 chr16 86921292 86921669 + 4 NA Intergenic MIRc|SINE|MIR -136304 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 711-56 chr5 36751134 36751409 + 4 NA Intergenic Intergenic 125423 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 677-51 chr20 42402903 42403215 + 4 NA intron (NM_133170, intron 9 of 31) L1ME4c|LINE|L1 -282424 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 772-30 chr2 137789151 137789387 + 4 NA Intergenic Intergenic 138663 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 479-86 chr18 7531052 7531224 + 4 NA Intergenic Tigger16b|DNA|TcMar-Tigger -36178 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 996-24 chr6 151655819 151656181 + 4 NA Intergenic Intergenic -34496 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 735-73 chr5 163892333 163892827 + 4 NA Intergenic Intergenic 386961 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 509-103 chr19 3146943 3147180 + 4 NA intron (NR_110670, intron 2 of 3) L2a|LINE|L2 8114 NR_110670 100996351 NR_110670 ENSG00000267551 LOC100996351 - uncharacterized LOC100996351 ncRNA 1190-6 chr4 175213783 175214176 + 4 NA Intergenic LTR25-int|LTR|ERV1 295621 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 1031-8 chr18 76137948 76138563 + 4 NA intron (NR_040034, intron 4 of 5) intron (NR_040034, intron 4 of 5) 15257 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 512-192 chr4 63930368 63930543 + 4 NA Intergenic L1MA5|LINE|L1 478995 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 632-77 chr3 112842038 112842362 + 4 NA intron (NM_001370552, intron 1 of 7) L1P4d|LINE|L1 3750 NM_001008784 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 624-58 chr2 65886405 65886721 + 4 NA Intergenic Intergenic -453964 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 751-64 chr5 154578588 154578979 + 4 NA Intergenic MIRc|SINE|MIR 17289 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 661-45 chr19 56406837 56407108 + 4 NA intron (NM_152478, intron 1 of 4) intron (NM_152478, intron 1 of 4) 2640 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 1610 chr10 41896553 41897438 + 4 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 471050 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1063-7 chr12 76290744 76291274 + 4 NA intron (NR_146531, intron 1 of 3) intron (NR_146531, intron 1 of 3) 31126 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 301-463 chr8 125948237 125948356 + 4 NA intron (NR_038446, intron 1 of 1) MER92-int|LTR|ERV1 2901 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 716-74 chr6 38590336 38590554 + 4 NA intron (NM_052893, intron 5 of 11) MIRb|SINE|MIR 5622 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 578-120 chr3 135611048 135611250 + 4 NA Intergenic L1PB4|LINE|L1 -354579 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 1471-5 chr5 9226894 9227544 + 4 NA intron (NM_003966, intron 6 of 22) intron (NM_003966, intron 6 of 22) -173324 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 748-18 chr11 9025508 9025741 + 4 NA intron (NM_001367977, intron 21 of 22) intron (NM_001367977, intron 21 of 22) -21623 NM_020645 56675 Hs.523467 NM_020645 ENSG00000175352 NRIP3 C11orf14|NY-SAR-105 nuclear receptor interacting protein 3 protein-coding 921-22 chr6 66255196 66255552 + 4 NA Intergenic L1MA3|LINE|L1 467495 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 573-78 chr18 32080406 32080603 + 4 NA Intergenic Intergenic -11370 NM_016271 51444 Hs.302408 NM_016271 ENSG00000134758 RNF138 HSD-4|NARF|STRIN|hNARF ring finger protein 138 protein-coding 502-57 chr11 91223733 91223953 + 4 NA Intergenic Intergenic -354641 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 623-72 chr2 193939137 193939428 + 4 NA Intergenic Intergenic -404987 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 803-25 chr2 95141088 95141423 + 4 NA Intergenic MER89-int|LTR|ERV1 18330 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 771-19 chr12 87426784 87427239 + 4 NA Intergenic L1MEc|LINE|L1 96272 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 1067-2 chr11 41015234 41015682 + 4 NA intron (NM_001258419, intron 1 of 6) AluSx|SINE|Alu 444178 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 901-11 chr14 82079396 82079788 + 4 NA Intergenic Intergenic -336454 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 673-12 chr10 31656518 31656717 + 4 NA Intergenic L1ME3Cz|LINE|L1 252309 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 814-29 chr18 78707446 78707655 + 4 NA Intergenic L1MD2|LINE|L1 -272725 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 746-56 chr4 89037059 89037296 + 4 NA intron (NM_014883, intron 1 of 23) MSTA-int|LTR|ERVL-MaLR 20008 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 2040 chr22 48570151 48571242 + 4 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) -5644 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 601-161 chrX 80703467 80703656 + 4 NA exon (NM_153252, exon 24 of 41) exon (NM_153252, exon 24 of 41) 106316 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 804-33 chr2 161778554 161778825 + 4 NA intron (NM_001354453, intron 2 of 24) intron (NM_001354453, intron 2 of 24) 154273 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 936-36 chrX 99534890 99535319 + 4 NA Intergenic L1M4|LINE|L1 875169 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 706-37 chr19 27573863 27574144 + 4 NA Intergenic ALR/Alpha|Satellite|centr -219428 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 787-38 chr5 10047484 10047823 + 4 NA Intergenic Intergenic -143829 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 1034-17 chr7 63979515 63980061 + 4 NA Intergenic Intergenic -19018 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 685-83 chr7 8897868 8898148 + 4 NA Intergenic Intergenic 464399 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 533-103 chr2 112641174 112641378 + 4 NA TTS (NR_033871) TTS (NR_033871) 2904 NR_033871 400999 Hs.585221 NR_033871 FLJ42351 - uncharacterized LOC400999 ncRNA 915-23 chr5 22805138 22805600 + 4 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 47975 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 485-286 chr8 90156895 90157096 + 4 NA Intergenic Intergenic -64493 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 1028-10 chr2 220160156 220160542 + 4 NA Intergenic Tigger3a|DNA|TcMar-Tigger -253784 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 839-19 chr2 4315931 4316389 + 4 NA Intergenic L1M1|LINE|L1 340062 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 922-35 chr7 62306686 62307196 + 4 NA Intergenic Intergenic 997115 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 439-280 chr8 79566622 79566877 + 4 NA Intergenic Intergenic -44368 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 446-116 chr17 27377436 27377608 + 4 NA Intergenic MER44D|DNA|TcMar-Tigger -40483 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 1020-9 chr2 15117817 15118322 + 4 NA Intergenic Intergenic 443265 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 700-54 chr2 237838886 237839173 + 4 NA intron (NM_001080504, intron 15 of 15) MER68|LTR|ERVL -20594 NM_001308353 10267 Hs.471783 NM_005855 ENSG00000132329 RAMP1 - receptor activity modifying protein 1 protein-coding 528-106 chr17 7147924 7148137 + 4 NA Intergenic Intergenic 31340 NM_001671 432 Hs.12056 NM_001671 ENSG00000141505 ASGR1 ASGPR|ASGPR1|CLEC4H1|HL-1 asialoglycoprotein receptor 1 protein-coding 694-103 chr5 76936724 76936907 + 4 NA Intergenic HAL1|LINE|L1 -16230 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 1379-8 chr8 139726775 139727363 + 4 NA TTS (NM_031466) TTS (NM_031466) -23946 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1260-5 chr3 3931028 3931541 + 4 NA Intergenic L1MEg|LINE|L1 -130409 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 435-261 chr9 27381251 27381406 + 4 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -84178 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 574-126 chr4 58534450 58534645 + 4 NA intron (NR_133943, intron 1 of 2) L1MA2|LINE|L1 1781 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 782-12 chr11 92167810 92168119 + 4 NA Intergenic LTR90B|LTR|LTR -57070 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1051-17 chr6 140403585 140403993 + 4 NA Intergenic Intergenic 198537 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 618-13 chr10 48372055 48372320 + 4 NA intron (NM_001323302, intron 3 of 13) MER21B|LTR|ERVL -29425 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 1023-6 chr11 75116391 75116901 + 4 NA Intergenic L1MEg|LINE|L1 -19756 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 364-157 chr16 65704873 65705038 + 4 NA Intergenic Intergenic -128655 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 850-21 chr2 108254763 108255177 + 4 NA intron (NM_001008743, intron 4 of 7) intron (NM_001008743, intron 4 of 7) 15002 NM_001008743 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 456-24 chr1 232402306 232402527 + 4 NA exon (NM_020808, exon 20 of 21) exon (NM_020808, exon 20 of 21) 113192 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 630-51 chr2 60961732 60961999 + 4 NA intron (NM_144709, intron 9 of 17) intron (NM_144709, intron 9 of 17) 55347 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 961-5 chr19 58111193 58111676 + 4 NA intron (NR_027135, intron 1 of 1) AluJr4|SINE|Alu 6992 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 808-18 chr15 58023155 58023589 + 4 NA intron (NM_170696, intron 1 of 11) L1MA4A|LINE|L1 -9349 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 496-250 chr7 4376992 4377150 + 4 NA Intergenic AluJo|SINE|Alu -242234 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 556-114 chr2 188183360 188183566 + 4 NA intron (NR_126396, intron 1 of 2) Tigger3a|DNA|TcMar-Tigger 104228 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 658-37 chr13 83646100 83646345 + 4 NA Intergenic L1MA8|LINE|L1 236171 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 538-94 chr18 38597114 38597404 + 4 NA Intergenic Intergenic 940124 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 590-126 chr4 120000334 120000558 + 4 NA Intergenic Intergenic 60906 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 638-92 chr3 110917427 110917730 + 4 NA Intergenic Intergenic 152381 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 294-431 chr7 29086317 29086424 + 4 NA intron (NM_001371264, intron 10 of 15) (ATATGT)n|Simple_repeat|Simple_repeat -38663 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 688-91 chr5 178960572 178960856 + 4 NA 3' UTR (NM_001323309, exon 5 of 5) 3' UTR (NM_001323309, exon 5 of 5) 19516 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 2139 chr8 89247592 89248755 + 4 NA Intergenic L1MA4A|LINE|L1 509538 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 783-12 chr10 42361341 42361675 + 4 NA intron (NR_024380, intron 1 of 2) intron (NR_024380, intron 1 of 2) 6537 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 837-11 chr19 2878969 2879358 + 4 NA TTS (NM_001300843) TTS (NM_001300843) 11828 NR_145838 80032 Hs.287433 NM_024967 ENSG00000172000 ZNF556 - zinc finger protein 556 protein-coding 856-35 chr4 160136157 160136461 + 4 NA Intergenic L1MA6|LINE|L1 -358525 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 588-71 chr2 101915981 101916166 + 4 NA Intergenic L1MD2|LINE|L1 -67392 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 755-47 chr4 135522468 135522845 + 4 NA Intergenic Intergenic 365437 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 726-4 chr1 168157829 168158207 + 4 NA Intergenic L1MA5A|LINE|L1 -20351 NM_001349633 23432 Hs.271809 NM_007369 ENSG00000143147 GPR161 RE2 G protein-coupled receptor 161 protein-coding 1017-8 chr16 19930336 19930706 + 4 NA Intergenic MIR|SINE|MIR -44887 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 593-90 chr20 48533338 48533499 + 4 NA Intergenic MER104|DNA|TcMar-Tc2 173507 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 809-40 chr5 30280922 30281301 + 4 NA Intergenic L1M1|LINE|L1 400551 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 438-256 chr7 41599755 41599943 + 4 NA Intergenic L1M4b|LINE|L1 -94070 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 612-153 chrX 42705045 42705216 + 4 NA Intergenic MIRb|SINE|MIR 73033 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 956-23 chr6 49911462 49911782 + 4 NA Intergenic MSTB|LTR|ERVL-MaLR -34526 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 1075-10 chr4 32084835 32085296 + 4 NA intron (NR_125936, intron 1 of 2) LTR27E|LTR|ERV1 -62643 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 610-71 chr18 523966 524217 + 4 NA Intergenic MIR|SINE|MIR -8797 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 679-94 chr6 52159855 52160202 + 4 NA Intergenic L1ME5|LINE|L1 -9005 NR_131248 101154644 Hs.582788 NR_131248 LINCMD1 LINC-MD1|MIR133BHG long intergenic non-protein coding RNA, muscle differentiation 1 ncRNA 694-133 chr9 26345086 26345352 + 4 NA Intergenic L1MA9|LINE|L1 278544 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 661-71 chr4 30895101 30895430 + 4 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 174896 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 466-225 chr6 62276558 62276745 + 4 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 9574 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 1396-4 chr11 22099723 22100260 + 4 NA Intergenic L1M4|LINE|L1 -93094 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 670-4 chr1 80590223 80590470 + 4 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) -50941 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 705-93 chr7 68988987 68989293 + 4 NA Intergenic Intergenic 608484 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 1424 chr11 55050576 55051264 + 4 NA Intergenic ALR/Alpha|Satellite|centr -211235 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 929-4 chr10 62262025 62262293 + 4 NA intron (NM_001282941, intron 2 of 4) MIR3|SINE|MIR 6685 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 693-82 chr5 52291300 52291549 + 4 NA Intergenic Intergenic 283393 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 781-68 chr8 128967093 128967370 + 4 NA Intergenic Intergenic -1230 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 654-67 chr2 99258267 99258541 + 4 NA Intergenic Intergenic -3297 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 697-21 chr13 65855999 65856234 + 4 NA Intergenic Intergenic -9931 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 899-13 chr18 6664392 6664816 + 4 NA Intergenic Intergenic -65112 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 497-235 chr5 114627371 114627593 + 4 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 51441 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 716-75 chr6 49247453 49247661 + 4 NA Intergenic L1PA15|LINE|L1 215696 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 1097-5 chr16 12208455 12209151 + 4 NA intron (NM_032167, intron 14 of 20) AluJo|SINE|Alu 232069 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 353-54 chr10 42303084 42303265 + 4 NA Intergenic Intergenic 64871 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 480-4 chr1 41022898 41023059 + 4 NA intron (NR_037868, intron 1 of 3) intron (NR_037868, intron 1 of 3) -1223 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 983-16 chr5 68835559 68836063 + 4 NA Intergenic Intergenic 194116 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 566-69 chr17 61193142 61193319 + 4 NA intron (NM_001330413, intron 23 of 25) AluSz6|SINE|Alu 174474 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 596-41 chr11 108023407 108023697 + 4 NA intron (NM_003478, intron 1 of 18) intron (NM_003478, intron 1 of 18) 14654 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 1356-2 chr5 44620979 44621732 + 4 NA Intergenic Intergenic -111073 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 519-93 chr2 7927732 7927887 + 4 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) -28154 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 906-10 chr10 133595038 133595410 + 4 NA Intergenic L1MC|LINE|L1 -25266 NR_033789 399833 Hs.660426 NM_001001678 SPRNP1 - shadow of prion protein pseudogene 1 pseudo 607-2 chr1 20423529 20423712 + 4 NA intron (NR_033887, intron 1 of 11) L1MB7|LINE|L1 5174 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 1230-2 chr11 125711043 125711573 + 4 NA Intergenic L1M5|LINE|L1 -30461 NM_001612 56 Hs.169222 NM_001612 ENSG00000134940 ACRV1 D11S4365|SP-10|SPACA2 acrosomal vesicle protein 1 protein-coding 814-32 chr2 19312942 19313387 + 4 NA Intergenic Intergenic -35265 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 587-16 chr10 81856541 81856701 + 4 NA Intergenic L1MB7|LINE|L1 -18573 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 420-15 chr1 166438358 166438511 + 4 NA Intergenic Intergenic 51605 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 1047-14 chr2 240262653 240263019 + 4 NA Intergenic MSTA-int|LTR|ERVL-MaLR -122178 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 370-130 chr13 72731845 72731978 + 4 NA intron (NM_024808, intron 3 of 11) intron (NM_024808, intron 3 of 11) 3988 NM_001366664 79866 Hs.643464 NM_024808 ENSG00000136122 BORA C13orf34 BORA aurora kinase A activator protein-coding 481-292 chr8 83438893 83439061 + 4 NA Intergenic Intergenic 35219 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 723 chr1 24973906 24974302 + 4 NA Intergenic Intergenic -9094 NM_001031680 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC RUNX family transcription factor 3 protein-coding 639-45 chr15 81600754 81601026 + 4 NA Intergenic L1MEg|LINE|L1 -226677 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 664-58 chr2 126563032 126563334 + 4 NA Intergenic L1MB5|LINE|L1 -92752 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 414-77 chr12 133131264 133131420 + 4 NA promoter-TSS (NM_001277291) promoter-TSS (NM_001277291) 715 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 921-11 chr2 49091680 49092073 + 4 NA intron (NM_000145, intron 1 of 9) L1ME1|LINE|L1 32273 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 641-32 chr12 114116970 114117297 + 4 NA Intergenic Intergenic 124637 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 636-89 chr3 5399159 5399440 + 4 NA Intergenic MIRc|SINE|MIR -149044 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 569-20 chr1 246091616 246091878 + 4 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 325665 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 1098-7 chr6 168017059 168017458 + 4 NA promoter-TSS (NM_030615) promoter-TSS (NM_030615) -615 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 2003 chr15 26997057 26998350 + 4 NA intron (NM_001270873, intron 2 of 5) L1M4b|LINE|L1 26522 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 418-274 chr8 20637280 20637558 + 4 NA Intergenic Intergenic -22493 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 1187-4 chr14 76740359 76740939 + 4 NA Intergenic L1MA4A|LINE|L1 -20819 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 594-122 chr5 154098797 154099012 + 4 NA Intergenic Intergenic 59937 NM_001135037 4238 Hs.432818 NM_005927 ENSG00000037749 MFAP3 - microfibril associated protein 3 protein-coding 678-30 chr15 61896054 61896235 + 4 NA intron (NM_001018088, intron 66 of 81) L1MA4|LINE|L1 164303 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 630-125 chr7 36947913 36948169 + 4 NA intron (NM_001206480, intron 16 of 21) L2a|LINE|L2 -28609 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 988-12 chr19 27616086 27616551 + 4 NA Intergenic ALR/Alpha|Satellite|centr -177113 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 486-138 chr2 62006558 62006760 + 4 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) 101017 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 662-19 chr13 96355472 96355671 + 4 NA intron (NM_153456, intron 1 of 1) Tigger1|DNA|TcMar-Tigger -71658 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 604-58 chr16 64097009 64097198 + 4 NA Intergenic Intergenic 1024960 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 1244-3 chr11 55009784 55010232 + 4 NA Intergenic ALR/Alpha|Satellite|centr -252147 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 1062-22 chr8 128368241 128368602 + 4 NA Intergenic MER34C_|LTR|ERV1 196258 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 360-383 chr5 141336539 141336676 + 4 NA intron (NM_018912, intron 1 of 3) L1MB3|LINE|L1 -2153 NM_032009 56113 Hs.368160 NM_018915 ENSG00000081853 PCDHGA2 PCDH-GAMMA-A2 protocadherin gamma subfamily A, 2 protein-coding 764-62 chr6 147497169 147497567 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie -11322 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 1210-6 chr2 33687659 33688356 + 4 NA Intergenic L1M4c|LINE|L1 -18879 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 754-65 chr5 25820937 25821402 + 4 NA Intergenic ERVL-E-int|LTR|ERVL 630216 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 925-23 chr5 4911318 4911610 + 4 NA Intergenic THE1C|LTR|ERVL-MaLR -122895 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 868-11 chr15 46515038 46515638 + 4 NA Intergenic L1MA6|LINE|L1 -668751 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 1307-4 chr17 33427490 33428020 + 4 NA intron (NM_001094, intron 1 of 9) MLT1F|LTR|ERVL-MaLR 106005 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 610-27 chr11 36802154 36802424 + 4 NA Intergenic Intergenic -204010 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 416-173 chr2 85223592 85223714 + 4 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) 10001 NR_136323 102724579 Hs.669216 NR_136323 LOC102724579 - uncharacterized LOC102724579 ncRNA 656-77 chr3 45075141 45075411 + 4 NA Intergenic MER3|DNA|hAT-Charlie 45133 NM_001308394 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 614-7 chr10 19351000 19351312 + 4 NA intron (NM_001142308, intron 25 of 39) intron (NM_001142308, intron 25 of 39) 302355 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 236-301 chr6 52214022 52214122 + 4 NA Intergenic Intergenic 27697 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 542-73 chr16 61713112 61713296 + 4 NA intron (NM_001796, intron 10 of 11) intron (NM_001796, intron 10 of 11) 323234 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 1163-7 chr17 77661091 77661582 + 4 NA Intergenic AluJr|SINE|Alu 67223 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 484-156 chr20 54994268 54994486 + 4 NA Intergenic AluSx|SINE|Alu -428666 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 1425-4 chr5 156926677 156927281 + 4 NA intron (NM_001146726, intron 4 of 7) L2b|LINE|L2 36247 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 1818-3 chr5 50276647 50277462 + 4 NA Intergenic L1PA17|LINE|L1 164234 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 438-236 chr6 39673914 39674149 + 4 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 51377 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 708-11 chr10 78118415 78118727 + 4 NA Intergenic MER31A|LTR|ERV1 84708 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 1150-6 chr4 55139777 55140339 + 4 NA Intergenic MLT1F|LTR|ERVL-MaLR -14463 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 1015 chr1 15922045 15922506 + 4 NA exon (NM_015001, exon 10 of 15) exon (NM_015001, exon 10 of 15) 53857 NM_003443 7709 Hs.433764 NM_003443 ENSG00000116809 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 662-84 chr6 40175211 40175538 + 4 NA Intergenic Intergenic 180632 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 873-2 chr1 223218618 223219093 + 4 NA Intergenic AluSg|SINE|Alu -75607 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 1683 chr1 40462196 40462869 + 4 NA exon (NM_023070, exon 5 of 5) exon (NM_023070, exon 5 of 5) 12056 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 562-179 chr5 82805292 82805460 + 4 NA Intergenic Intergenic -34779 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 503-53 chr11 55603618 55603802 + 4 NA exon (NM_001004700, exon 1 of 1) exon (NM_001004700, exon 1 of 1) 688 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 1252-5 chr3 180229225 180229671 + 4 NA Intergenic MER61-int|LTR|ERV1 -184725 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 697-9 chr11 1395753 1395954 + 4 NA intron (NM_003957, intron 1 of 19) intron (NM_003957, intron 1 of 19) 5919 NR_046331 9024 Hs.170819 NM_003957 ENSG00000174672 BRSK2 C11orf7|PEN11B|SAD1|SADA|STK29 BR serine/threonine kinase 2 protein-coding 496-69 chr13 87853416 87853672 + 4 NA Intergenic Intergenic -43024 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 606-41 chr12 99210446 99210648 + 4 NA intron (NM_152788, intron 14 of 25) intron (NM_152788, intron 14 of 25) -55457 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 518-307 chr8 138541583 138541803 + 4 NA Intergenic Intergenic -43963 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 880-53 chrX 87833606 87834070 + 4 NA Intergenic L1MA4A|LINE|L1 316036 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 672-48 chr19 43977377 43977731 + 4 NA Intergenic Intergenic -6616 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 963-25 chr5 130590924 130591334 + 4 NA Intergenic L1MA5|LINE|L1 574127 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 1448 chr12 8967734 8968347 + 4 NA intron (NR_137427, intron 1 of 2) intron (NR_137427, intron 1 of 2) 17996 NM_001329103 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 388-137 chr18 9217399 9217504 + 4 NA intron (NM_001204056, intron 6 of 11) MIRc|SINE|MIR 79888 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 655-39 chr14 72190288 72190608 + 4 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 256921 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 724-84 chr6 70728312 70728702 + 4 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 59977 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 631-3 chr1 55646718 55646991 + 4 NA Intergenic Intergenic 298109 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 567-20 chr10 10085073 10085312 + 4 NA Intergenic Intergenic 26470 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 442-218 chr4 113920055 113920230 + 4 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 59505 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 589-135 chr5 170125851 170126034 + 4 NA Intergenic L1MEf|LINE|L1 20045 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 759-31 chr19 31789551 31789949 + 4 NA Intergenic L1ME2z|LINE|L1 197469 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 1027-8 chr19 53170727 53171291 + 4 NA intron (NM_001353458, intron 4 of 4) AluSx1|SINE|Alu -11949 NM_001172674 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 240-36 chr10 24914246 24914345 + 4 NA intron (NM_020200, intron 3 of 8) intron (NM_020200, intron 3 of 8) 38311 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 652-106 chr6 158907535 158907792 + 4 NA intron (NR_160979, intron 2 of 2) L1ME3C|LINE|L1 19186 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 786-58 chr6 147772830 147773122 + 4 NA Intergenic Intergenic 264286 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 710-9 chr10 30299738 30300064 + 4 NA Intergenic L1ME1|LINE|L1 49437 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 736-68 chr5 45320400 45320789 + 4 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 375786 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 716-26 chr14 82730470 82730744 + 4 NA Intergenic Intergenic 87975 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 940-23 chr4 43009776 43010214 + 4 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 116729 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 616-63 chr18 7744844 7745135 + 4 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 177673 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 438-4 chr1 38240317 38240481 + 4 NA Intergenic Intergenic -25632 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 1181-9 chr2 107200486 107201180 + 4 NA intron (NR_049853, intron 2 of 3) AluSp|SINE|Alu 148692 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 425-226 chr5 30258776 30258902 + 4 NA Intergenic Intergenic 378279 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 805-36 chr4 62654321 62654687 + 4 NA Intergenic MIRc|SINE|MIR -492739 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 435-129 chr2 161525558 161525766 + 4 NA Intergenic L1MDa|LINE|L1 -17760 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 549-30 chr10 75385098 75385370 + 4 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -16294 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 701-99 chr8 118607539 118607831 + 4 NA intron (NR_109794, intron 1 of 4) MIR|SINE|MIR -13316 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 1106-9 chr6 64097806 64098294 + 4 NA intron (NM_001292009, intron 31 of 43) L1ME3E|LINE|L1 291214 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 591-73 chr2 89804343 89804604 + 4 NA Intergenic Intergenic -166566 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 955-12 chr3 54497557 54498012 + 4 NA intron (NM_018398, intron 4 of 37) L1ME2|LINE|L1 142073 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 648-62 chr18 53067856 53068054 + 4 NA intron (NM_005215, intron 7 of 28) intron (NM_005215, intron 7 of 28) -169146 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 1098-10 chr9 4954190 4954586 + 4 NA Intergenic Charlie1a|DNA|hAT-Charlie -30698 NM_001322195 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 905-15 chr18 79821566 79821924 + 4 NA Intergenic L1M4|LINE|L1 -41923 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 616-9 chr1 219042992 219043278 + 4 NA intron (NR_031644, intron 6 of 6) MER65-int|LTR|ERV1 -124624 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 1343-5 chr5 56045584 56046190 + 4 NA Intergenic MLT1J2|LTR|ERVL-MaLR 50720 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 684-36 chr14 87917435 87917722 + 4 NA Intergenic MER58B|DNA|hAT-Charlie 75604 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 754-54 chr3 114276442 114276747 + 4 NA Intergenic MLT1B|LTR|ERVL-MaLR -17434 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 558-39 chr11 114890934 114891116 + 4 NA Intergenic Intergenic 212498 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 980-17 chr8 78827158 78827672 + 4 NA Intergenic L1MA6|LINE|L1 -10114 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 817-19 chr17 53885423 53885703 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 62636 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 688-77 chr3 100508729 100509077 + 4 NA intron (NM_018004, intron 1 of 5) L1M2b|LINE|L1 16284 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 1176-2 chr14 59012411 59013039 + 4 NA intron (NR_110547, intron 5 of 5) L1M2|LINE|L1 -175942 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 1091-5 chr19 27615415 27616001 + 4 NA Intergenic ALR/Alpha|Satellite|centr -177723 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 477-93 chr14 70848011 70848221 + 4 NA Intergenic L2b|LINE|L2 -38603 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 372-378 chr4 141177448 141177602 + 4 NA Intergenic Intergenic -43370 NM_001292002 27309 Hs.120766 NM_014487 ENSG00000109445 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 592-187 chrX 64996321 64996541 + 4 NA intron (NM_001178032, intron 1 of 4) L1M4|LINE|L1 -19898 NM_001178033 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 1058 chr1 220912029 220912388 + 4 NA Intergenic Intergenic -32068 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 761-60 chr6 76830663 76830910 + 4 NA Intergenic Intergenic -237163 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 1227-3 chr2 104601803 104602400 + 4 NA Intergenic AluJr|SINE|Alu -91592 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 458-177 chr3 144862701 144862862 + 4 NA Intergenic Intergenic 889700 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 474-178 chr3 30303962 30304176 + 4 NA Intergenic MLT1D|LTR|ERVL-MaLR -214799 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 702-89 chr6 168476608 168476959 + 4 NA intron (NM_001166412, intron 1 of 12) L1ME4a|LINE|L1 35599 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 655-107 chr6 162317328 162317689 + 4 NA intron (NM_004562, intron 2 of 11) THE1B|LTR|ERVL-MaLR -409624 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 560-99 chr20 41943903 41944130 + 4 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -325639 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 944-4 chr10 76488172 76488665 + 4 NA intron (NM_001305581, intron 6 of 6) L1MB7|LINE|L1 -399626 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 431-134 chr2 79808452 79808618 + 4 NA intron (NM_001282598, intron 3 of 17) L1MD|LINE|L1 58048 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 3147 chr20 46501105 46502861 + 4 NA exon (NM_001353824, exon 5 of 5) exon (NM_001353824, exon 5 of 5) 11589 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 711-73 chr8 134443733 134444086 + 4 NA Intergenic Tigger2|DNA|TcMar-Tigger -154162 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 795-39 chr4 64182877 64183177 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR 226423 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 530-141 chr2 140758793 140758935 + 4 NA intron (NM_018557, intron 35 of 90) intron (NM_018557, intron 35 of 90) -172179 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 409-119 chr18 35538647 35538818 + 4 NA Intergenic L1MC5a|LINE|L1 -40772 NM_194281 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 486-136 chr2 50101580 50101862 + 4 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -127518 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 782-21 chr14 65530219 65530711 + 4 NA intron (NM_004480, intron 2 of 9) L1MEc|LINE|L1 59363 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 532-169 chr3 109220937 109221098 + 4 NA Intergenic Intergenic 42852 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 539-77 chr15 57492984 57493253 + 4 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -98786 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 374-230 chr21 19757950 19758082 + 4 NA Intergenic Intergenic 141739 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 918-32 chr9 134655216 134655566 + 4 NA intron (NM_001278074, intron 1 of 65) intron (NM_001278074, intron 1 of 65) -2548 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 667-119 chr8 126665177 126665460 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -106840 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 1410-3 chr6 159615218 159615903 + 4 NA Intergenic Intergenic 77681 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 752-64 chr5 165075921 165076179 + 4 NA Intergenic Intergenic 605771 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 702-64 chr3 102570808 102571160 + 4 NA Intergenic Intergenic 135969 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 1581-4 chr5 130670592 130671098 + 4 NA Intergenic Intergenic 494411 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 627-84 chr4 172367868 172368115 + 4 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 320926 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 674-70 chr4 106633108 106633303 + 4 NA Intergenic (GTTCTGAT)n|Simple_repeat|Simple_repeat 199581 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 785-9 chr1 180578792 180579107 + 4 NA Intergenic L1MD|LINE|L1 19975 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 1506-3 chr8 139180240 139180839 + 4 NA Intergenic L1MA4|LINE|L1 -266498 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 608-40 chr14 48480882 48481110 + 4 NA Intergenic L1M4a1|LINE|L1 -685982 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 982-24 chr7 54624776 54625243 + 4 NA Intergenic L1MB4|LINE|L1 68039 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 845-42 chr9 31379273 31379675 + 4 NA intron (NR_135134, intron 1 of 1) intron (NR_135134, intron 1 of 1) 2016 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 1674-3 chr2 217761491 217762122 + 4 NA Intergenic L1MEf|LINE|L1 -5213 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 678-33 chr16 8194044 8194308 + 4 NA Intergenic Intergenic 395662 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 563-171 chr7 50404307 50404553 + 4 NA 3' UTR (NM_001291842, exon 5 of 5) 3' UTR (NM_001291842, exon 5 of 5) 45920 NM_001287496 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 718 chr1 49615187 49615476 + 4 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -143246 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 616-111 chr3 125657416 125657689 + 4 NA Intergenic ALR/Alpha|Satellite|centr -62055 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 742-13 chr10 118659664 118659894 + 4 NA Intergenic L1PBa|LINE|L1 -64131 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 1208-6 chr15 57041536 57042027 + 4 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 122336 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 354-183 chr18 29729334 29729489 + 4 NA Intergenic L1MA4|LINE|L1 -569499 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 1129-15 chr5 150960229 150960771 + 4 NA Intergenic LTR8|LTR|ERV1 -13916 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 752-47 chr21 38230217 38230598 + 4 NA intron (NM_001276438, intron 1 of 2) L1MB8|LINE|L1 481 NM_001276438 3772 Hs.411299 NM_002243 ENSG00000157551 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium voltage-gated channel subfamily J member 15 protein-coding 625-128 chr9 82621464 82621642 + 4 NA Intergenic Intergenic 441589 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 396-221 chr3 87619672 87619800 + 4 NA Intergenic Intergenic -172970 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 960-33 chr5 145382331 145382693 + 4 NA Intergenic L1ME2|LINE|L1 452830 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 578-87 chr2 78035022 78035270 + 4 NA intron (NR_110288, intron 1 of 3) MIR|SINE|MIR -53584 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 1064-14 chr4 71860769 71861335 + 4 NA Intergenic MER4B-int|LTR|ERV1 -55532 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 999 chr1 113479369 113479830 + 4 NA intron (NM_001142782, intron 1 of 20) L1M3c|LINE|L1 89084 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 713-45 chr2 183194945 183195226 + 4 NA Intergenic Intergenic 70642 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 1300-3 chr20 57856112 57856658 + 4 NA Intergenic Intergenic -144849 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 1038-9 chr19 43849215 43849817 + 4 NA 3' UTR (NM_181845, exon 7 of 7) 3' UTR (NM_181845, exon 7 of 7) 22195 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 533-155 chr4 58754520 58754701 + 4 NA Intergenic Intergenic -218282 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 651-87 chr3 192688485 192688678 + 4 NA intron (NM_004113, intron 2 of 5) 5S|rRNA|rRNA 38960 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 1000-5 chr13 96261154 96261531 + 4 NA intron (NM_153456, intron 1 of 1) (AT)n|Simple_repeat|Simple_repeat -165887 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 1294-3 chr5 107762607 107763106 + 4 NA Intergenic Intergenic -91919 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 613-131 chr8 51314427 51314596 + 4 NA Intergenic Intergenic 494934 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 610-133 chr5 13530196 13530456 + 4 NA Intergenic LTR48B|LTR|ERV1 414154 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 412-300 chr7 9276649 9276826 + 4 NA Intergenic L1MB8|LINE|L1 -357533 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 2974 chr19 51914011 51915550 + 4 NA Intergenic Intergenic -9763 NM_023074 65251 Hs.148322 NM_023074 ENSG00000198093 ZNF649 - zinc finger protein 649 protein-coding 899-24 chr5 45829927 45830297 + 4 NA Intergenic Intergenic -133732 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 511-120 chr2 67679345 67679559 + 4 NA Intergenic L2c|LINE|L2 146110 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 1106-12 chr8 122411635 122411986 + 4 NA Intergenic AluSx|SINE|Alu 156834 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1146-14 chr8 134235126 134235747 + 4 NA Intergenic THE1D-int|LTR|ERVL-MaLR 348940 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 672-9 chr10 44032150 44032406 + 4 NA Intergenic Intergenic 119876 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 538-37 chr11 38930621 38930852 + 4 NA Intergenic Intergenic 281878 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 1244-4 chr13 29226670 29227124 + 4 NA intron (NM_001033602, intron 3 of 13) intron (NM_001033602, intron 3 of 13) -201763 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 641-76 chr3 20675365 20675649 + 4 NA Intergenic Intergenic 333039 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 879-33 chr9 22999879 23000193 + 4 NA Intergenic Intergenic 353836 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 969-17 chr3 53912364 53912732 + 4 NA Intergenic L1MB7|LINE|L1 -20689 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 1038 chr1 187131786 187132251 + 4 NA intron (NR_126347, intron 1 of 3) L1MA6|LINE|L1 39176 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 747-2 chr1 56104421 56104819 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 159533 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 683-93 chr8 132909868 132910152 + 4 NA intron (NM_003235, intron 18 of 47) MIR|SINE|MIR 43052 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 540-115 chr2 88365026 88365305 + 4 NA Intergenic Intergenic 87528 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 1014-6 chr12 94088724 94089123 + 4 NA Intergenic MER104|DNA|TcMar-Tc2 -59654 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 672-80 chr4 59366037 59366535 + 4 NA Intergenic Intergenic 352713 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 454-315 chr8 107392057 107392193 + 4 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -55610 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 751-37 chr2 169201607 169201872 + 4 NA exon (NM_004525, exon 44 of 79) exon (NM_004525, exon 44 of 79) 120632 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 912-34 chr4 126840706 126841003 + 4 NA Intergenic Intergenic -792103 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 696 chr1 25133379 25133633 + 4 NA Intergenic Intergenic 98996 NM_207170 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 1039-6 chr12 132911986 132912587 + 4 NA Intergenic Intergenic 24444 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 568-80 chr17 54386081 54386361 + 4 NA Intergenic Intergenic -514470 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 806-46 chr4 93849871 93850102 + 4 NA Intergenic L1MEf|LINE|L1 21233 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 663-30 chr12 86626499 86626836 + 4 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 118482 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 616-75 chr2 35442508 35442821 + 4 NA Intergenic Intergenic -28741 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 828-23 chr18 8931465 8931764 + 4 NA Intergenic Intergenic -171085 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 734-35 chr2 51261985 51262281 + 4 NA intron (NR_135237, intron 2 of 10) (AT)n|Simple_repeat|Simple_repeat 229532 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 613-3 chr1 33197879 33198154 + 4 NA Intergenic L1MEc|LINE|L1 -15973 NM_018207 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 402-131 chr19 28668325 28668517 + 4 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 59273 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 507-93 chr15 58211119 58211373 + 4 NA Intergenic MLT1H2|LTR|ERVL-MaLR 72865 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 609-94 chr5 14005414 14005649 + 4 NA Intergenic Intergenic -61051 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 1589-6 chr3 46777212 46777980 + 4 NA Intergenic L1MA9|LINE|L1 -20741 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 1999 chr15 80623042 80624274 + 4 NA Intergenic L1MB8|LINE|L1 42555 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 483-257 chr8 53186302 53186517 + 4 NA Intergenic Intergenic 65228 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 1319-3 chr13 85457384 85458155 + 4 NA intron (NR_046989, intron 1 of 3) THE1C-int|LTR|ERVL-MaLR 94166 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 866-40 chr5 150961831 150962345 + 4 NA Intergenic MER4-int|LTR|ERV1 -15504 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 839-38 chr5 12351693 12352024 + 4 NA Intergenic L1MEg|LINE|L1 -222999 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 504-121 chr2 49843187 49843369 + 4 NA Intergenic Intergenic 130925 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 400-350 chr8 113960383 113960510 + 4 NA Intergenic Intergenic -523507 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 496-238 chr6 94998316 94998484 + 4 NA Intergenic Intergenic 579051 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 856-11 chr12 34567434 34567916 + 4 NA Intergenic ALR/Alpha|Satellite|centr 545179 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 327-116 chr12 61884617 61884775 + 4 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 308143 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 448-99 chr19 29264750 29264980 + 4 NA Intergenic MamRep434|DNA|TcMar-Tigger -51714 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 718-8 chr1 175050019 175050443 + 4 NA Intergenic Intergenic -17602 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 948-37 chr8 138986481 138987014 + 4 NA Intergenic Intergenic -72706 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 894-18 chr2 40615006 40615427 + 4 NA Intergenic Intergenic -102781 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 436-307 chr8 105172645 105172830 + 4 NA Intergenic L1MEd|LINE|L1 -145701 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 829-35 chr5 159751483 159751754 + 4 NA Intergenic MLT1H|LTR|ERVL-MaLR 119766 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 1114-2 chr3 81795277 81795643 + 4 NA Intergenic Intergenic -33815 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 344-357 chr4 60484583 60484712 + 4 NA Intergenic MIR|SINE|MIR -437972 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 822-69 chrX 41867977 41868377 + 4 NA intron (NM_003688, intron 1 of 26) intron (NM_003688, intron 1 of 26) 54857 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 555-107 chr2 229184856 229185058 + 4 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 47135 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 456-222 chr4 60637533 60637779 + 4 NA Intergenic L1PA16|LINE|L1 -284963 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 665-65 chr4 37052970 37053326 + 4 NA Intergenic Intergenic 51369 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 422-176 chr3 15086553 15086687 + 4 NA intron (NM_001302378, intron 4 of 12) intron (NM_001302378, intron 4 of 12) 12528 NM_022340 64145 Hs.475565 NM_022340 ENSG00000131381 RBSN Rabenosyn-5|ZFYVE20 rabenosyn, RAB effector protein-coding 671-110 chrX 67808749 67809043 + 4 NA Intergenic L1MDa|LINE|L1 264273 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 739-62 chr6 68017506 68017764 + 4 NA Intergenic Intergenic -37716 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 701-5 chr1 245058397 245058739 + 4 NA intron (NM_032328, intron 3 of 7) intron (NM_032328, intron 3 of 7) -87699 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 712-63 chr4 61006615 61006964 + 4 NA Intergenic MLT1M|LTR|ERVL-MaLR 84170 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 768-12 chr12 14403378 14403614 + 4 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 18215 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 420-168 chr20 55858985 55859232 + 4 NA Intergenic Intergenic 146411 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 1149-2 chr13 34811875 34812490 + 4 NA Intergenic HAL1|LINE|L1 -130105 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 621-138 chr8 138796159 138796342 + 4 NA intron (NM_152888, intron 12 of 64) intron (NM_152888, intron 12 of 64) 117791 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 659-22 chr12 20499368 20499664 + 4 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -72348 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 831-4 chr10 65886718 65887075 + 4 NA Intergenic L1MA5|LINE|L1 315471 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 539-92 chr17 62335894 62336125 + 4 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -34209 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 787-50 chr8 32882524 32882878 + 4 NA Intergenic L1MEc|LINE|L1 160866 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 573-112 chr22 28273071 28273420 + 4 NA intron (NM_001145418, intron 5 of 22) L1MEg|LINE|L1 -186624 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 695-52 chr2 128987985 128988406 + 4 NA Intergenic L2b|LINE|L2 123595 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 781-71 chr9 96813923 96814164 + 4 NA Intergenic L1ME1|LINE|L1 -35914 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 382-191 chr2 59888759 59888955 + 4 NA Intergenic Intergenic 494179 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 941-6 chr11 135063762 135064253 + 4 NA Intergenic Intergenic 78655 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 978-6 chr10 13863142 13863498 + 4 NA intron (NM_018027, intron 2 of 24) AluSz6|SINE|Alu 108576 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 508-188 chr5 63625944 63626146 + 4 NA Intergenic Intergenic 336247 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 2001-2 chr8 134386199 134387000 + 4 NA Intergenic LTR67B|LTR|ERVL -211472 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 736-32 chr18 53891268 53891490 + 4 NA Intergenic Intergenic -310320 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 1048-19 chr5 126442754 126443252 + 4 NA intron (NR_146196, intron 1 of 14) intron (NR_146196, intron 1 of 14) 19594 NM_001349542 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 682-90 chr6 61504734 61505075 + 4 NA Intergenic ALR/Alpha|Satellite|centr -69226 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 663-98 chr6 147009960 147010221 + 4 NA intron (NR_034115, intron 5 of 10) L1ME1|LINE|L1 -148835 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 394-232 chr4 16242499 16242663 + 4 NA intron (NR_027697, intron 2 of 2) intron (NR_027697, intron 2 of 2) 15918 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 573-114 chr3 8306840 8307094 + 4 NA intron (NR_033378, intron 3 of 3) MLT1A|LTR|ERVL-MaLR 194691 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 688-11 chr10 9397304 9397572 + 4 NA Intergenic L1M7|LINE|L1 -101845 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 916-8 chr14 66033607 66034032 + 4 NA Intergenic Intergenic -452552 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 702-14 chr11 55723784 55724061 + 4 NA Intergenic Intergenic -49516 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 902-36 chr7 71124875 71125164 + 4 NA Intergenic Intergenic -7125 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 925-36 chr8 136339671 136340164 + 4 NA Intergenic L1ME2|LINE|L1 -190881 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 622-34 chr15 62663187 62663421 + 4 NA intron (NM_015059, intron 6 of 55) L1ME3Cz|LINE|L1 15993 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 887-17 chr2 110153505 110153825 + 4 NA intron (NM_207181, intron 11 of 19) L1MDa|LINE|L1 -37099 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 633-56 chr19 56624503 56624808 + 4 NA TTS (NM_021216) TTS (NM_021216) -18504 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 764-25 chr14 72255367 72255716 + 4 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -261279 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 597-70 chr2 79762280 79762441 + 4 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 104223 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 1023-3 chr1 117457931 117458395 + 4 NA intron (NM_006699, intron 6 of 12) L2a|LINE|L2 90714 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 660-33 chr17 53681216 53681415 + 4 NA Intergenic Intergenic -141612 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 432-24 chr1 242148719 242148873 + 4 NA intron (NM_001320272, intron 6 of 10) L1ME1|LINE|L1 -149698 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 606-45 chr13 66807325 66807527 + 4 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -17743 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 787-51 chr8 60070721 60071034 + 4 NA Intergenic Intergenic 210523 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 428-181 chr3 76431100 76431277 + 4 NA Intergenic Intergenic -608911 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 614-140 chr8 134772558 134772738 + 4 NA Intergenic Tigger1|DNA|TcMar-Tigger 27959 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 684-131 chrX 57623054 57623263 + 4 NA Intergenic L1PA10|LINE|L1 31322 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 555-102 chr2 129627817 129628177 + 4 NA Intergenic AluSx1|SINE|Alu 249494 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 791-20 chr14 45900957 45901281 + 4 NA Intergenic Intergenic -163040 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 817-40 chr4 43547681 43547923 + 4 NA Intergenic Intergenic -55259 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 667 chr1 60418299 60418621 + 4 NA Intergenic Tigger3b|DNA|TcMar-Tigger 204225 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 825-3 chr10 24306035 24306368 + 4 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 30516 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 908-6 chr12 61844561 61844828 + 4 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 348145 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 473-267 chr8 51166634 51166881 + 4 NA Intergenic MamRep605|LTR?|LTR? 642688 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 504-242 chr7 77513752 77514023 + 4 NA Intergenic L2c|LINE|L2 -23408 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 676-32 chr14 60542150 60542378 + 4 NA Intergenic Intergenic 33118 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 713-42 chr2 129312811 129313064 + 4 NA Intergenic L1MDa|LINE|L1 -39046 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 478-10 chr1 100779012 100779209 + 4 NA Intergenic L2a|LINE|L2 59368 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 916-28 chr5 117014749 117015094 + 4 NA Intergenic L1M3|LINE|L1 -252712 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 798-56 chr5 162931155 162931480 + 4 NA Intergenic Intergenic -506254 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 377-28 chr1 226811634 226811875 + 4 NA Intergenic L1ME4c|LINE|L1 -58818 NM_012486 5664 Hs.25363 NM_000447 ENSG00000143801 PSEN2 AD3L|AD4|CMD1V|PS2|STM2 presenilin 2 protein-coding 611-7 chr1 194288474 194288706 + 4 NA Intergenic Intergenic 983845 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 683-22 chr15 83976362 83976626 + 4 NA intron (NM_207517, intron 20 of 29) MER1A|DNA|hAT-Charlie -103693 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 682-66 chr3 126416625 126416853 + 4 NA intron (NM_182628, intron 5 of 16) MER44A|DNA|TcMar-Tigger 21830 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 636-99 chr3 117123724 117124007 + 4 NA Intergenic Intergenic 202434 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 1071-20 chr6 66188486 66189047 + 4 NA Intergenic Intergenic 400887 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 1403-5 chr7 21729504 21730025 + 4 NA intron (NM_001277115, intron 45 of 81) MLT1B-int|LTR|ERVL-MaLR 186725 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 596-68 chr15 27083523 27083791 + 4 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 77662 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 573-202 chr8 129379435 129379696 + 4 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 104577 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 706-40 chr2 52615916 52616135 + 4 NA Intergenic Intergenic 86590 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 311-276 chr2 177332563 177332666 + 4 NA intron (NR_026966, intron 3 of 8) intron (NR_026966, intron 3 of 8) -18732 NR_106767 102465255 NR_106767 ENSG00000278418 MIR6512 hsa-mir-6512|mir-6512 microRNA 6512 ncRNA 1025-5 chr12 26393345 26393914 + 4 NA intron (NM_002223, intron 54 of 56) intron (NM_002223, intron 54 of 56) 198056 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 736-35 chr2 14684256 14684548 + 4 NA Intergenic Intergenic 51685 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 344-311 chr3 54729136 54729308 + 4 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -89365 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 640-151 chrX 67795961 67796146 + 4 NA Intergenic L1PB3|LINE|L1 251430 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 1008-5 chr14 76688665 76689089 + 4 NA Intergenic L1MD|LINE|L1 -72591 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 595-119 chr4 37341131 37341421 + 4 NA intron (NM_001144990, intron 2 of 6) MER47A|DNA|TcMar-Tigger 96533 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 485-118 chr19 34953651 34953804 + 4 NA Intergenic L1MB3|LINE|L1 10502 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 1952-2 chr13 72060191 72060905 + 4 NA Intergenic L1M1|LINE|L1 -193344 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 732-89 chr7 111794435 111794827 + 4 NA intron (NM_001363540, intron 30 of 52) intron (NM_001363540, intron 30 of 52) -13874 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 851-13 chr16 48750044 48750377 + 4 NA Intergenic L1MA5A|LINE|L1 -140030 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 810-10 chr14 43210272 43210533 + 4 NA Intergenic Intergenic 1296881 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 932-13 chr3 75135636 75136096 + 4 NA Intergenic L1MC4a|LINE|L1 -78610 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 671-49 chr2 152811571 152811886 + 4 NA Intergenic L1M2|LINE|L1 93091 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 540-57 chr12 114256706 114256877 + 4 NA Intergenic Arthur1B|DNA|hAT-Tip100 -15021 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 326-565 chr8 142311850 142311979 + 4 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 91268 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1002-13 chr5 13802878 13803306 + 4 NA intron (NM_001369, intron 47 of 78) intron (NM_001369, intron 47 of 78) 141388 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 570-203 chr8 137765294 137765538 + 4 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 318129 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 1123-18 chr6 144934080 144934864 + 4 NA Intergenic L1M4a1|LINE|L1 528817 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 663-29 chr12 73335285 73335459 + 4 NA Intergenic Intergenic 176182 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 700-35 chr17 52296853 52297308 + 4 NA Intergenic Intergenic -93442 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 403-182 chr21 29773007 29773199 + 4 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 24928 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 469-198 chr4 62483142 62483400 + 4 NA Intergenic Intergenic -321506 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 571-180 chr8 134978167 134978386 + 4 NA Intergenic AluY|SINE|Alu 128341 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 322-51 chr10 18775513 18775633 + 4 NA Intergenic Intergenic 116142 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 362-387 chr6 144905993 144906141 + 4 NA Intergenic L1MEd|LINE|L1 500412 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 662-61 chr3 94467099 94467330 + 4 NA Intergenic Intergenic 404153 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 685-63 chr22 47458505 47458781 + 4 NA Intergenic Intergenic 28468 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 639-86 chr4 46457822 46458085 + 4 NA Intergenic L1MA4|LINE|L1 -67825 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 640-90 chr4 4953635 4953821 + 4 NA intron (NR_125893, intron 2 of 2) L1ME1|LINE|L1 32920 NR_125893 101928306 Hs.543743 NR_125893 LOC101928306 - uncharacterized LOC101928306 ncRNA 811-25 chr2 79420432 79420798 + 4 NA Intergenic MIR|SINE|MIR 80229 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 656-39 chr13 104476532 104476852 + 4 NA Intergenic Intergenic -989175 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 967-17 chr3 189920656 189921113 + 4 NA Intergenic L1MC3|LINE|L1 90962 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 764-27 chr15 56810260 56810609 + 4 NA Intergenic LTR28B|LTR|ERV1 -76348 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 854-2 chr1 42195860 42196126 + 4 NA intron (NM_001198850, intron 7 of 12) LTR75B|LTR|ERVL -31248 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 723-15 chr10 75683529 75683846 + 4 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -28768 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 652-131 chr9 126210752 126210999 + 4 NA Intergenic MSTA|LTR|ERVL-MaLR 65040 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 957-13 chr2 115376132 115376466 + 4 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 32484 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 800-7 chr1 198790637 198791039 + 4 NA Intergenic MER21B|LTR|ERVL 68144 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 524-175 chr4 64222649 64222916 + 4 NA Intergenic Intergenic 186668 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 494-36 chr11 42349116 42349300 + 4 NA Intergenic MER21C|LTR|ERVL -95518 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 778-2 chr1 89250209 89250536 + 4 NA Intergenic L1MA2|LINE|L1 22488 NM_001134486 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 470-47 chr12 25732502 25732666 + 4 NA Intergenic L1M4b|LINE|L1 -84006 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 377-436 chrX 65603608 65603823 + 4 NA Intergenic Intergenic -51294 NR_033742 83957 Hs.652967 NR_033742 ENSG00000227942 FRMD8P1 - FERM domain containing 8 pseudogene 1 pseudo 485-240 chr6 6575809 6575966 + 4 NA intron (NR_026970, intron 1 of 7) intron (NR_026970, intron 1 of 7) -12833 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 559-50 chr14 81993856 81994145 + 4 NA Intergenic Intergenic -250862 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 424-234 chr5 169235316 169235496 + 4 NA intron (NM_003062, intron 3 of 35) L1MC3|LINE|L1 28288 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 751-63 chr5 116685924 116686170 + 4 NA Intergenic MER57F|LTR|ERV1 76162 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 804-14 chr12 15301696 15301999 + 4 NA Intergenic L1MA3|LINE|L1 -20661 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 804-17 chr12 133121719 133122081 + 4 NA exon (NM_001277291, exon 2 of 2) exon (NM_001277291, exon 2 of 2) 8573 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 812-25 chr16 59947180 59947496 + 4 NA intron (NR_110917, intron 1 of 3) AluJr|SINE|Alu 91985 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 578-124 chr3 181878236 181878425 + 4 NA Intergenic AluSp|SINE|Alu -74034 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 727-52 chr3 11104444 11104810 + 4 NA Intergenic MLT2A2|LTR|ERVL -32611 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 684-51 chr2 12328778 12329108 + 4 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 129813 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 2329 chr19 44244445 44245452 + 4 NA Intergenic L1ME1|LINE|L1 -14932 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 594-130 chr6 123640049 123640229 + 4 NA Intergenic Intergenic -3046 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 679-97 chr6 95540865 95541168 + 4 NA Intergenic Intergenic 36435 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 1128 chr1 63289126 63289755 + 4 NA intron (NR_038252, intron 3 of 11) L1M1|LINE|L1 27817 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 827-58 chr9 16019755 16020214 + 4 NA Intergenic Tigger7|DNA|TcMar-Tigger 233123 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 972-21 chr5 133172481 133172940 + 4 NA Intergenic Intergenic 120697 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 594-120 chr5 141430792 141431095 + 4 NA exon (NM_003735, exon 1 of 4) exon (NM_003735, exon 1 of 4) 436 NM_032094 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 734-20 chr15 53369389 53369786 + 4 NA Intergenic L1MEg|LINE|L1 171265 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 687-73 chr3 20220907 20221253 + 4 NA Intergenic L2a|LINE|L2 -34847 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 1035-13 chr5 44517473 44517764 + 4 NA Intergenic L1MCb|LINE|L1 -7336 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 563-31 chr11 42338478 42338703 + 4 NA Intergenic MIRc|SINE|MIR -84900 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 599-78 chr3 21200430 21200729 + 4 NA Intergenic L1MA4A|LINE|L1 -205147 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 600-52 chr19 27346352 27346561 + 4 NA Intergenic L1P1|LINE|L1 -446975 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 715-69 chr5 97644937 97645221 + 4 NA intron (NR_105028, intron 2 of 3) L2c|LINE|L2 140383 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 562-4 chr1 81164320 81164510 + 4 NA Intergenic L1M1|LINE|L1 -141777 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 667-94 chr5 168616044 168616248 + 4 NA Intergenic L1ME3Cz|LINE|L1 -36778 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 579-92 chr21 22594209 22594451 + 4 NA Intergenic MLT1C|LTR|ERVL-MaLR -484954 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 1018-7 chr13 89843482 89843902 + 4 NA Intergenic Intergenic 276025 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 695-3 chr1 59894812 59895249 + 4 NA intron (NM_000775, intron 8 of 8) L1MC4|LINE|L1 31743 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 1160-12 chr7 62973785 62974314 + 4 NA Intergenic ALR/Alpha|Satellite|centr 330007 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 717-4 chr1 61551181 61551447 + 4 NA Intergenic L1M1|LINE|L1 -102928 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 634-60 chr14 85599297 85599559 + 4 NA intron (NM_001346143, intron 1 of 1) OldhAT1|DNA|hAT-Ac 66079 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 1052-14 chr2 111638613 111639027 + 4 NA Intergenic L1MB3|LINE|L1 132314 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 736-38 chr2 33975210 33975611 + 4 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -91816 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 630-5 chr1 239849780 239849950 + 4 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 50007 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 924-13 chr11 70490445 70490816 + 4 NA intron (NM_133266, intron 7 of 10) intron (NM_133266, intron 7 of 10) 92101 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 892-2 chr1 105408888 105409376 + 4 NA Intergenic L2a|LINE|L2 209803 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 802-63 chr7 61911745 61912142 + 4 NA Intergenic ALR/Alpha|Satellite|centr 1392113 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 648-68 chr2 72809573 72809764 + 4 NA intron (NR_135774, intron 1 of 19) L1MD|LINE|L1 16365 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 663-20 chr11 80454121 80454301 + 4 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 308592 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 481-305 chr8 134426622 134426825 + 4 NA Intergenic Intergenic -171348 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1064-16 chr8 99053035 99053517 + 4 NA intron (NM_017890, intron 3 of 61) L1PA4|LINE|L1 40010 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 669-67 chr20 54659854 54660159 + 4 NA Intergenic MER4A1_|LTR|ERV1 184413 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 476-246 chr6 151187102 151187283 + 4 NA Intergenic L1M5|LINE|L1 41265 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 594-146 chr8 79347867 79348053 + 4 NA Intergenic Intergenic 15772 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 912-35 chr5 63427919 63428253 + 4 NA Intergenic L1MC5|LINE|L1 534206 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 392-130 chr19 35218898 35219045 + 4 NA Intergenic AluSx|SINE|Alu 9754 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 474-175 chr22 33539132 33539280 + 4 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -102537 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 738-71 chr8 89269203 89269490 + 4 NA Intergenic Intergenic 488365 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 399-337 chrX 45367629 45367805 + 4 NA Intergenic L1MA7|LINE|L1 -137671 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 512-167 chr3 76605139 76605358 + 4 NA Intergenic L3|LINE|CR1 -434851 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 844-54 chr5 62849856 62850217 + 4 NA Intergenic L1M2|LINE|L1 271217 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 1069-11 chr6 63206715 63207161 + 4 NA Intergenic THE1A-int|LTR|ERVL-MaLR 113039 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 786-33 chr2 240482379 240482673 + 4 NA intron (NM_017844, intron 11 of 13) L1M4b|LINE|L1 -25826 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 413-257 chr6 20942183 20942356 + 4 NA intron (NM_017774, intron 9 of 15) L1MEc|LINE|L1 407812 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 922-18 chr19 36539432 36539811 + 4 NA Intergenic L1M4|LINE|L1 -11350 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 758-4 chr1 193895822 193896182 + 4 NA Intergenic Intergenic 591257 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 612-100 chr4 46976695 46976915 + 4 NA intron (NM_001204267, intron 5 of 7) intron (NM_001204267, intron 5 of 7) 16776 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 765-10 chr11 41526184 41526432 + 4 NA Intergenic L1PA7|LINE|L1 -66656 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 404-280 chr6 147496566 147496716 + 4 NA Intergenic L1MC5|LINE|L1 -12049 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 844-46 chr3 103631679 103632046 + 4 NA Intergenic THE1C-int|LTR|ERVL-MaLR -107746 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 2017 chr6 125109101 125110063 + 4 NA Intergenic L1M2|LINE|L1 -44191 NM_001003396 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 709-32 chr18 27414535 27414810 + 4 NA Intergenic Intergenic -72016 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 748-31 chr14 73445177 73445506 + 4 NA intron (NM_001005743, intron 1 of 12) AluJo|SINE|Alu 13239 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 438-19 chr1 187375427 187375575 + 4 NA Intergenic Intergenic -68127 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 750-59 chr5 46292541 46292893 + 4 NA Intergenic ALR/Alpha|Satellite|centr -596337 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 858-5 chr10 66865375 66865771 + 4 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -60463 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 476-233 chr5 156363605 156363769 + 4 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 36523 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 608-116 chr4 157062918 157063080 + 4 NA Intergenic Intergenic -13126 NM_001166061 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 649-49 chr2 54332467 54332839 + 4 NA intron (NM_001369403, intron 1 of 3) intron (NM_001369403, intron 1 of 3) 1769 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 724-52 chr3 86074721 86074996 + 4 NA TTS (NM_001167675) TTS (NM_001167675) -246808 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 791-61 chr6 40066085 40066462 + 4 NA Intergenic Intergenic -131811 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 847-29 chr2 31781372 31781813 + 4 NA Intergenic L1PREC2|LINE|L1 22388 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 440-217 chr6 65136187 65136381 + 4 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -165134 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 1060-8 chr14 70545491 70545990 + 4 NA Intergenic L1M1|LINE|L1 -10736 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 742-83 chr9 69304617 69304914 + 4 NA intron (NR_047671, intron 3 of 3) L1PA16|LINE|L1 2291 NR_047671 100885775 Hs.49768 NR_047671 ENSG00000278910 BANCR LINC00586 BRAF-activated non-protein coding RNA ncRNA 1446-3 chr8 138031577 138032366 + 4 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 51574 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 922-25 chr4 164488238 164488723 + 4 NA Intergenic Intergenic -105225 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 683-85 chr8 43738886 43739127 + 4 NA Intergenic ALR/Alpha|Satellite|centr 446564 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 542-246 chrX 87246009 87246314 + 4 NA Intergenic L1PA15|LINE|L1 -271641 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 516-224 chr6 45702879 45703133 + 4 NA Intergenic Intergenic 234591 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 837-42 chr8 87198190 87198539 + 4 NA intron (NM_173538, intron 4 of 10) L1M4|LINE|L1 331949 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 661-21 chr13 55912018 55912320 + 4 NA Intergenic Intergenic 737715 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 1098-3 chr17 11026550 11027028 + 4 NA Intergenic Intergenic -188702 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 649-92 chr5 162598901 162599183 + 4 NA Intergenic L1MB8|LINE|L1 531400 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 794-48 chr8 129601401 129601643 + 4 NA intron (NR_130917, intron 1 of 3) L1PA10|LINE|L1 -26504 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 994-16 chr8 145041566 145041931 + 4 NA Intergenic LOR1a|LTR|ERV1 -10719 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 602-86 chr3 65646806 65647098 + 4 NA intron (NM_001365904, intron 1 of 24) L1MD3|LINE|L1 -246864 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 1045-2 chr14 43258054 43258469 + 4 NA Intergenic Intergenic 1249022 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 647-104 chr8 139819496 139819982 + 4 NA intron (NM_001160372, intron 21 of 22) AluSc8|SINE|Alu -116616 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 720-39 chr19 35465550 35465832 + 4 NA Intergenic HAL1|LINE|L1 17434 NM_001370087 2867 Hs.248056 NM_005306 ENSG00000126262 FFAR2 FFA2R|GPR43 free fatty acid receptor 2 protein-coding 949-5 chr14 86567312 86567739 + 4 NA Intergenic L1ME3E|LINE|L1 -338253 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 762-80 chr9 91931393 91931888 + 4 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 18588 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 798-6 chr10 111041224 111041587 + 4 NA Intergenic L1M1|LINE|L1 -35624 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 583-89 chr2 101637107 101637389 + 4 NA Intergenic Intergenic -60455 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 632-9 chr10 10051602 10051832 + 4 NA Intergenic Intergenic -7005 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 658-116 chr7 133895503 133895787 + 3 NA exon (NM_021807, exon 12 of 18) exon (NM_021807, exon 12 of 18) -70757 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 672-114 chr8 129502272 129502746 + 3 NA intron (NR_130917, intron 1 of 3) L1MDa|LINE|L1 -18367 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 460-253 chr6 13317260 13317570 + 3 NA intron (NR_134872, intron 4 of 7) intron (NR_134872, intron 4 of 7) 11122 NM_016495 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 393-50 chr11 40005639 40005813 + 3 NA Intergenic Intergenic 287404 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 456-112 chr15 79276587 79276949 + 3 NA intron (NR_038997, intron 1 of 1) L1ME4a|LINE|L1 -5954 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 668-36 chr16 35444375 35444703 + 3 NA Intergenic L1M1|LINE|L1 36057 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 324-506 chr7 95967766 95967902 + 3 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 195328 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 412-211 chr3 87674091 87674385 + 3 NA Intergenic Intergenic -118468 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 589-125 chr5 92968435 92968673 + 3 NA Intergenic Intergenic 602789 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 434-169 chr22 22897559 22897729 + 3 NA Intergenic Intergenic 9828 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 533-90 chr19 11948768 11949082 + 3 NA exon (NM_144566, exon 4 of 4) exon (NM_144566, exon 4 of 4) -16115 NM_001367172 284390 Hs.646386 NM_001012753 ENSG00000197054 ZNF763 ZNF|ZNF440L zinc finger protein 763 protein-coding 465-3 chr1 23030821 23031029 + 3 NA intron (NM_015013, intron 2 of 18) intron (NM_015013, intron 2 of 18) 11457 NM_015013 23028 Hs.591518 NM_015013 ENSG00000004487 KDM1A AOF2|BHC110|CPRF|KDM1|LSD1 lysine demethylase 1A protein-coding 228-9 chr1 86441335 86441494 + 3 NA intron (NM_006536, intron 8 of 13) intron (NM_006536, intron 8 of 13) 17243 NM_006536 9635 Hs.241551 NM_006536 ENSG00000137975 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 231-341 chr7 116418309 116418399 + 3 NA Intergenic Intergenic -81384 NM_001206747 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 566-104 chr2 199693759 199694107 + 3 NA Intergenic Intergenic 85865 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 634-91 chr21 17008367 17008761 + 3 NA Intergenic Intergenic 418327 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 347-135 chr14 61911817 61911979 + 3 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -15797 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 645-34 chr14 81890451 81890853 + 3 NA Intergenic Intergenic -147514 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 527-225 chr6 86762466 86762811 + 3 NA Intergenic MER57B1|LTR|ERV1 -174890 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 554-87 chr16 58303398 58303615 + 3 NA Intergenic L1MA8|LINE|L1 -8459 NM_001080492 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 1577 chr1 238286830 238287445 + 3 NA Intergenic Intergenic 198880 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 593-86 chr2 235176563 235176897 + 3 NA Intergenic Intergenic 148995 NM_001371306 460-95 chr16 8435946 8436271 + 3 NA Intergenic MER104|DNA|TcMar-Tc2 153730 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 350-379 chr5 3445048 3445196 + 3 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) -7694 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 676-3 chr1 78213174 78213527 + 3 NA Intergenic L1PA13|LINE|L1 -16249 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 878-53 chr8 135842636 135842992 + 3 NA Intergenic MIRc|SINE|MIR 385358 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 420-289 chr8 99586301 99586486 + 3 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -49532 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 611-93 chr20 55538525 55538764 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -111447 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 482-29 chr1 242403728 242404049 + 3 NA intron (NM_001320272, intron 2 of 10) L3|LINE|CR1 45580 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 802-49 chr4 46019427 46019939 + 3 NA Intergenic Intergenic 104371 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 455-243 chr6 78534470 78534750 + 3 NA Intergenic L1MEd|LINE|L1 4699 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 546-173 chr4 74095892 74096115 + 3 NA Intergenic Intergenic 3192 NM_002089 2920 Hs.75765 NM_002089 ENSG00000081041 CXCL2 CINC-2a|GRO2|GROb|MGSA-b|MIP-2a|MIP2|MIP2A|SCYB2 C-X-C motif chemokine ligand 2 protein-coding 643-129 chr8 99162117 99162402 + 3 NA intron (NM_017890, intron 15 of 61) intron (NM_017890, intron 15 of 61) 148993 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 1017-3 chr11 28372332 28372742 + 3 NA Intergenic Intergenic 105011 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 520-175 chr22 23164153 23164553 + 3 NA non-coding (NR_146295, exon 10 of 10) non-coding (NR_146295, exon 10 of 10) -16156 NM_021574 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 844-62 chr7 32139475 32140096 + 3 NA intron (NM_001322059, intron 3 of 17) MLT1L|LTR|ERVL-MaLR -68349 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 227-14 chr1 110122013 110122115 + 3 NA Intergenic MIRc|SINE|MIR 9621 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 579-31 chr13 60983449 60983737 + 3 NA Intergenic Intergenic 216287 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 538-194 chr5 46036290 46036481 + 3 NA Intergenic ALR/Alpha|Satellite|centr -340005 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 579-128 chr5 29905153 29905603 + 3 NA Intergenic Intergenic 24818 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1072-16 chr4 90786459 90787040 + 3 NA intron (NM_001145065, intron 7 of 10) MER21A|LTR|ERVL 551718 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1254-5 chr4 38288997 38289703 + 3 NA Intergenic Intergenic -77564 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 562-199 chr7 11845478 11845844 + 3 NA Intergenic Intergenic -13463 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 294-312 chr3 162235361 162235482 + 3 NA Intergenic Intergenic 738613 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 376-120 chr15 63661159 63661296 + 3 NA intron (NM_003922, intron 45 of 77) intron (NM_003922, intron 45 of 77) -60400 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 547-204 chr6 69595395 69595597 + 3 NA Intergenic Intergenic 200970 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 502-53 chr11 79574502 79574677 + 3 NA Intergenic Intergenic -133559 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 749-81 chr5 156089382 156089945 + 3 NA Intergenic PABL_B-int|LTR|ERV1 -237094 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 493-49 chr11 79351905 79352149 + 3 NA intron (NM_001098816, intron 1 of 33) MIRc|SINE|MIR 50082 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 722-13 chr10 48885420 48885910 + 3 NA intron (NM_020945, intron 43 of 61) intron (NM_020945, intron 43 of 61) 28570 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 397-204 chr3 77405964 77406130 + 3 NA intron (NM_001290039, intron 2 of 26) THE1D|LTR|ERVL-MaLR 308035 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 660-114 chr8 140146847 140147210 + 3 NA intron (NM_001160372, intron 17 of 22) MADE1|DNA|TcMar-Mariner -46493 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 1205-9 chr5 179055987 179056686 + 3 NA Intergenic LTR49|LTR|ERV1 -4037 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 549-50 chr12 125949119 125949405 + 3 NA Intergenic L1MD2|LINE|L1 34112 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 420-196 chr3 189933760 189933973 + 3 NA Intergenic Intergenic 103944 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 646-87 chr3 60749825 60750265 + 3 NA intron (NR_148921, intron 4 of 4) MIRb|SINE|MIR -132175 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 707-66 chr3 38685005 38685275 + 3 NA Intergenic MLT1K-int|LTR|ERVL-MaLR -35453 NM_001160160 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 327-545 chrX 112158492 112158689 + 3 NA intron (NM_001004308, intron 2 of 2) intron (NM_001004308, intron 2 of 2) 75565 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 RTL4 Mar4|Mart4|SIRH11|ZCCHC16 retrotransposon Gag like 4 protein-coding 698-21 chr12 93575877 93576145 + 3 NA 3' UTR (NM_001270470, exon 3 of 3) 3' UTR (NM_001270470, exon 3 of 3) 3336 NM_001270471 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 1013-17 chr8 86672032 86672678 + 3 NA intron (NM_019098, intron 3 of 17) AluSx|SINE|Alu 71320 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 583-40 chr12 15161697 15161935 + 3 NA intron (NM_032918, intron 2 of 4) MIR|SINE|MIR 9893 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 541-212 chr7 8276657 8276843 + 3 NA intron (NR_125740, intron 3 of 5) MIRb|SINE|MIR -14138 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 482-6 chr1 58558301 58558585 + 3 NA Intergenic L1MC1|LINE|L1 -11717 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 351-262 chr20 34173123 34173285 + 3 NA Intergenic Intergenic -60961 NM_003908 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 409-173 chr20 24558361 24558625 + 3 NA intron (NM_024893, intron 2 of 3) L1M4a1|LINE|L1 88532 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 802-64 chr7 69033519 69033903 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 563913 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 509-135 chr21 30936265 30936456 + 3 NA Intergenic MER52D|LTR|ERV1 -54780 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 481-148 chr2 85934926 85935135 + 3 NA Intergenic LTR49-int|LTR|ERV1 45750 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 460-63 chr12 39963746 39964033 + 3 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 142192 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 538-43 chr11 91620278 91620570 + 3 NA Intergenic L1M1|LINE|L1 -604610 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 281-226 chr2 123853357 123853563 + 3 NA Intergenic L1MB3|LINE|L1 171714 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 406-28 chr1 239931961 239932157 + 3 NA Intergenic L2a|LINE|L2 -32187 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 593-40 chr13 84950889 84951262 + 3 NA Intergenic Intergenic 167421 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 675-56 chr3 41974934 41975365 + 3 NA Intergenic Intergenic -13046 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 401-238 chr4 116699177 116699389 + 3 NA Intergenic Intergenic 386293 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 511-228 chr6 64218514 64218687 + 3 NA intron (NM_001292009, intron 31 of 43) MER67B|LTR|ERV1 411764 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 421-99 chr16 55225704 55226023 + 3 NA Intergenic LTR88c|LTR|Gypsy? -98696 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 508-43 chr11 106613416 106613605 + 3 NA Intergenic L2c|LINE|L2 362103 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 607-147 chr8 126301824 126302103 + 3 NA Intergenic AluSz6|SINE|Alu -23532 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 557-76 chr18 11604778 11605056 + 3 NA Intergenic L1MCa|LINE|L1 -4641 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 525-22 chr10 14642725 14642982 + 3 NA intron (NM_001282695, intron 2 of 5) MLT1A-int|LTR|ERVL-MaLR -38452 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 633-91 chr4 95867691 95868003 + 3 NA Intergenic L1MB8|LINE|L1 27754 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 762-24 chr14 87769643 87770135 + 3 NA Intergenic HAL1|LINE|L1 -114595 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 388-4 chr1 40117471 40117679 + 3 NA Intergenic L1PA16|LINE|L1 -20105 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 667-128 chr9 80867624 80867944 + 3 NA Intergenic L1MA9|LINE|L1 821751 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 523-74 chr14 28269914 28270146 + 3 NA Intergenic L1PREC2|LINE|L1 495289 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 554-95 chr17 57028292 57028551 + 3 NA Intergenic MER41-int|LTR|ERV1 -17057 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 1430-2 chr7 66263341 66264167 + 3 NA intron (NM_003596, intron 2 of 5) intron (NM_003596, intron 2 of 5) 58420 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 520-90 chr14 54355701 54356001 + 3 NA Intergenic Intergenic -41017 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 606-26 chr10 126821777 126822098 + 3 NA Intergenic L1MEf|LINE|L1 -83472 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 554-162 chr4 108428214 108428459 + 3 NA Intergenic Intergenic -128897 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 481-57 chr11 80229719 80230029 + 3 NA Intergenic L1MA6|LINE|L1 532929 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 638-77 chr21 23227220 23227551 + 3 NA Intergenic Intergenic 148101 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 891-28 chr5 44990406 44991045 + 3 NA Intergenic Intergenic 181778 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 385-187 chr2 151022838 151023012 + 3 NA Intergenic L1MA5|LINE|L1 238938 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 607-122 chr5 152388679 152389068 + 3 NA Intergenic L2c|LINE|L2 16406 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 221-117 chr18 4452971 4453083 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 2239 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 250-453 chr9 30378597 30378760 + 3 NA Intergenic Intergenic 29776 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 821-3 chr1 99090673 99091096 + 3 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -86023 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 240-166 chr16 12161934 12162051 + 3 NA intron (NM_032167, intron 13 of 20) LTR33|LTR|ERVL 185258 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 313-139 chr14 41790482 41790680 + 3 NA intron (NM_001330106, intron 2 of 4) L1M5|LINE|L1 183725 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 478-312 chr9 95416705 95416913 + 3 NA Intergenic L1M5|LINE|L1 -46800 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 394-220 chr3 105585798 105586022 + 3 NA Intergenic Intergenic 219001 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 138-55 chr4 46196002 46196059 + 3 NA Intergenic Intergenic -71976 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 389-234 chr3 95802256 95802515 + 3 NA Intergenic Intergenic -119192 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 826-20 chr15 46737912 46738542 + 3 NA Intergenic L1ME4c|LINE|L1 -445862 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 941-21 chr4 80535642 80536246 + 3 NA intron (NM_152770, intron 2 of 5) L3|LINE|CR1 200224 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 630-17 chr12 23242841 23243177 + 3 NA Intergenic L1MEc|LINE|L1 67373 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 720-32 chr16 25327011 25327390 + 3 NA Intergenic L2c|LINE|L2 -69355 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 395-210 chr21 46073123 46073284 + 3 NA Intergenic L1M5|LINE|L1 -24909 NM_058174 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 1060-7 chr12 102613056 102613536 + 3 NA Intergenic L1MEf|LINE|L1 -132733 NM_001111285 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 624-119 chr8 106053342 106053754 + 3 NA intron (NR_125797, intron 1 of 4) L1MEf|LINE|L1 6955 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 392-239 chr4 157355744 157355988 + 3 NA intron (NM_001083620, intron 12 of 15) (ATAT)n|Simple_repeat|Simple_repeat 135138 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 536-198 chr6 65095305 65095508 + 3 NA intron (NM_001292009, intron 12 of 43) L1MB1|LINE|L1 -206012 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 406-170 chr20 51172363 51172579 + 3 NA Intergenic Intergenic -149364 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 429-246 chr5 164851632 164851814 + 3 NA Intergenic L1ME1|LINE|L1 381444 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 207-90 chr15 24755708 24755791 + 3 NA Intergenic Intergenic -67859 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 422-101 chr15 87340126 87340298 + 3 NA Intergenic L1MC3|LINE|L1 -236717 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 395-174 chr2 113253757 113253995 + 3 NA intron (NR_015377, intron 2 of 5) intron (NR_015377, intron 2 of 5) 17607 NR_015377 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 340-203 chr17 59790172 59790352 + 3 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -51004 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 633-112 chr7 34183667 34184061 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 278325 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 593-22 chr11 37509437 37509653 + 3 NA Intergenic Intergenic -429056 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 831-48 chr8 75110133 75110609 + 3 NA Intergenic L1MA9|LINE|L1 110216 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 349-282 chr2 207868617 207868784 + 3 NA intron (NM_001080475, intron 6 of 7) intron (NM_001080475, intron 6 of 7) -98794 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 164-57 chr2 132963882 132963967 + 3 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 48367 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 531-89 chr18 33044816 33045124 + 3 NA intron (NM_001308126, intron 21 of 23) L1PB4|LINE|L1 -271947 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 473-157 chr20 55453728 55453964 + 3 NA Intergenic Intergenic -26649 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 360-480 chr8 137489325 137489513 + 3 NA Intergenic MIR|SINE|MIR -75831 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 641-119 chr9 135429073 135429445 + 3 NA Intergenic L1MA9|LINE|L1 42990 NR_038969 100506599 Hs.561897 NR_038969 ENSG00000225361 PPP1R26-AS1 - PPP1R26 antisense RNA 1 ncRNA 472-29 chr10 20341877 20342083 + 3 NA Intergenic Intergenic -209990 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 500-56 chr11 92992104 92992287 + 3 NA Intergenic L1M5|LINE|L1 22572 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 375-389 chr7 106717080 106717229 + 3 NA Intergenic L2b|LINE|L2 -55996 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 971-17 chr7 46547232 46547954 + 3 NA Intergenic L1ME1|LINE|L1 149529 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 783-74 chr8 25190070 25190489 + 3 NA intron (NM_024940, intron 1 of 51) Charlie4a|DNA|hAT-Charlie 5590 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 381-269 chr4 44166134 44166330 + 3 NA Intergenic Intergenic 149170 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 619-65 chr2 14213811 14214149 + 3 NA Intergenic Intergenic 186978 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 418-61 chr13 44072513 44072677 + 3 NA Intergenic L1MEc|LINE|L1 -37954 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 493-176 chr20 15994262 15994486 + 3 NA intron (NM_001351663, intron 15 of 17) Kanga1b|DNA|TcMar-Tc2 -8492 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 704 chr1 55911777 55912337 + 3 NA Intergenic L1MA4|LINE|L1 32906 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 342-345 chr4 4777923 4778058 + 3 NA intron (NR_125892, intron 2 of 2) L3|LINE|CR1 16230 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 435-59 chr12 23856858 23857111 + 3 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 92686 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 444-145 chr21 34901689 34901927 + 3 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -13109 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 409-220 chr4 72544002 72544216 + 3 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 25112 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 532-277 chr8 118989839 118990128 + 3 NA intron (NM_001324095, intron 1 of 7) Tigger4a|DNA|TcMar-Tigger 37720 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 358-71 chr11 79333182 79333323 + 3 NA intron (NM_001098816, intron 1 of 33) (CCAT)n|Simple_repeat|Simple_repeat 68857 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 511-278 chr9 38772923 38773250 + 3 NA Intergenic L1MA3|LINE|L1 151998 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 433-198 chr4 37729974 37730161 + 3 NA Intergenic Intergenic -43691 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 257-84 chr12 16544516 16544696 + 3 NA Intergenic Intergenic 60773 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 561-171 chr5 150895884 150896181 + 3 NA exon (NM_001172832, exon 5 of 5) exon (NM_001172832, exon 5 of 5) 8951 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 394-263 chr5 40193554 40193739 + 3 NA Intergenic MIRc|SINE|MIR 141355 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 411-117 chr17 60484815 60485021 + 3 NA intron (NM_006380, intron 3 of 12) L1PA6|LINE|L1 41322 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 585-44 chr14 78514146 78514515 + 3 NA intron (NM_004796, intron 1 of 16) L2c|LINE|L2 110611 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 446-67 chr11 85153064 85153265 + 3 NA intron (NM_001142699, intron 5 of 27) MIRc|SINE|MIR -229743 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 343-543 chr8 86733997 86734249 + 3 NA intron (NM_019098, intron 2 of 17) AluJr4|SINE|Alu 9552 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 453-155 chr3 21404558 21404837 + 3 NA Intergenic L1MA4A|LINE|L1 -1029 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 515-250 chr7 68259880 68260106 + 3 NA Intergenic Intergenic 239740 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 466-109 chr19 12013564 12013737 + 3 NA intron (NR_134928, intron 2 of 3) intron (NR_134928, intron 2 of 3) 22091 NM_001308346 163059 Hs.667776 NM_152602 ENSG00000197647 ZNF433 - zinc finger protein 433 protein-coding 380-295 chr5 7789130 7789298 + 3 NA intron (NM_020546, intron 19 of 24) intron (NM_020546, intron 19 of 24) 61919 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 444-215 chr6 5872287 5872503 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 131649 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 693-111 chr9 73947366 73947616 + 3 NA Intergenic AluJr|SINE|Alu -424040 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 748-63 chr4 30532289 30532711 + 3 NA Intergenic L1MC2|LINE|L1 -187869 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 445-129 chr2 115114653 115114848 + 3 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 46593 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 477-242 chr5 167649786 167649987 + 3 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 76227 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 320-47 chr10 10988850 10989071 + 3 NA intron (NM_001326319, intron 4 of 16) A-rich|Low_complexity|Low_complexity -15688 NM_001326330 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 694-47 chr16 65142755 65143177 + 3 NA intron (NR_110918, intron 3 of 3) intron (NR_110918, intron 3 of 3) -20903 NM_001330576 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 460-225 chr4 109023340 109023523 + 3 NA intron (NM_198721, intron 4 of 36) Tigger5|DNA|TcMar-Tigger -260378 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 701-21 chr13 113344871 113345241 + 3 NA intron (NM_024719, intron 4 of 7) intron (NM_024719, intron 4 of 7) -6617 NR_046541 100874068 Hs.661837 NR_046541 GRTP1-AS1 - GRTP1 antisense RNA 1 ncRNA 509-234 chr7 62765530 62765806 + 3 NA Intergenic ALR/Alpha|Satellite|centr 538388 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1088-13 chr8 108896955 108897633 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -109700 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 503-193 chr3 44906263 44906570 + 3 NA intron (NM_003241, intron 9 of 13) (AAAT)n|Simple_repeat|Simple_repeat 31808 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 313-270 chr2 108011583 108011748 + 3 NA 3' UTR (NM_001305007, exon 9 of 9) 3' UTR (NM_001305007, exon 9 of 9) 25141 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 256-189 chr2 31883108 31883234 + 3 NA intron (NR_126032, intron 5 of 6) intron (NR_126032, intron 5 of 6) -79191 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 719-58 chr4 128682215 128682635 + 3 NA Intergenic MER97b|DNA|hAT-Tip100 -127275 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 509-146 chr3 42484486 42484730 + 3 NA Intergenic L1PBa|LINE|L1 -4691 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 827-25 chr2 150892313 150892907 + 3 NA Intergenic Intergenic 263713 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 242-406 chr8 120972897 120973008 + 3 NA Intergenic Intergenic -160906 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 302-99 chr12 25090912 25091041 + 3 NA intron (NR_159367, intron 13 of 19) intron (NR_159367, intron 13 of 19) 38270 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 400-222 chr3 102991376 102991563 + 3 NA Intergenic L1MEg|LINE|L1 532647 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 482-5 chr1 57842232 57842454 + 3 NA intron (NM_001353980, intron 3 of 5) THE1D-int|LTR|ERVL-MaLR -18238 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 656-89 chr5 9112295 9112759 + 3 NA intron (NM_003966, intron 15 of 22) intron (NM_003966, intron 15 of 22) -58632 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 653-31 chr12 98033911 98034291 + 3 NA Intergenic Intergenic -38653 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 211-247 chr5 164850866 164850970 + 3 NA Intergenic Intergenic 380639 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 335-303 chr20 47109190 47109383 + 3 NA intron (NM_172110, intron 9 of 13) intron (NM_172110, intron 9 of 13) -57681 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 827-14 chr13 55464187 55464706 + 3 NA Intergenic Intergenic 289992 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 720-24 chr12 133165761 133166267 + 3 NA Intergenic LTR47A2|LTR|ERVL -15481 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 314-312 chr2 173518984 173519157 + 3 NA Intergenic L1MEc|LINE|L1 164198 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 727-67 chr5 130804068 130804387 + 3 NA Intergenic Intergenic 361029 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 573-21 chr10 34482373 34482773 + 3 NA intron (NM_001184789, intron 3 of 22) intron (NM_001184789, intron 3 of 22) 332723 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 360-425 chr6 156149849 156150044 + 3 NA Intergenic Intergenic 203149 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 546-94 chr18 63758634 63758920 + 3 NA intron (NM_001040147, intron 1 of 7) intron (NM_001040147, intron 1 of 7) 5730 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 310-304 chr21 27425921 27426092 + 3 NA Intergenic Intergenic -296373 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 555-140 chr4 46006944 46007283 + 3 NA Intergenic Intergenic 116941 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 1251-8 chr5 162639921 162640751 + 3 NA Intergenic L1MA1|LINE|L1 572694 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 346-85 chr11 121060513 121060749 + 3 NA intron (NM_001363644, intron 8 of 8) intron (NM_001363644, intron 8 of 8) 36559 NM_001130047 219899 Hs.504136 NM_152715 ENSG00000154114 TBCEL El|LRRC35 tubulin folding cofactor E like protein-coding 614-59 chr2 152812502 152812898 + 3 NA Intergenic L1M2|LINE|L1 94063 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 654-126 chr8 120335631 120335935 + 3 NA intron (NM_021110, intron 42 of 47) intron (NM_021110, intron 42 of 47) 109367 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 332-531 chr8 88662759 88662962 + 3 NA Intergenic L1MEf|LINE|L1 -335377 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 564-139 chr4 55330935 55331172 + 3 NA Intergenic L1ME3|LINE|L1 -15189 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 483-23 chr10 25781296 25781550 + 3 NA Intergenic MER39|LTR|ERV1 129711 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 265-155 chr18 41025525 41025667 + 3 NA Intergenic Intergenic 495081 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 396-104 chr14 51471529 51471754 + 3 NA intron (NR_051990, intron 2 of 2) HAL1ME|LINE|L1 -17487 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 917-20 chr5 114296061 114296486 + 3 NA Intergenic Intergenic -65797 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 1038-17 chr8 139578296 139578900 + 3 NA Intergenic L1MC3|LINE|L1 124525 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 555-127 chr3 54730299 54730510 + 3 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -90547 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 1251-5 chr4 52738755 52739373 + 3 NA Intergenic Intergenic 12361 NM_001242690 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 407-233 chr4 165915887 165916037 + 3 NA intron (NM_001204760, intron 1 of 9) intron (NM_001204760, intron 1 of 9) 42725 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 423-161 chr21 30403358 30403563 + 3 NA Intergenic Intergenic 7429 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 902-20 chr2 102013612 102014302 + 3 NA intron (NR_048564, intron 3 of 8) MLT1I|LTR|ERVL-MaLR 14996 NR_048564 7850 Hs.25333 NM_004633 ENSG00000115590 IL1R2 CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB interleukin 1 receptor type 2 protein-coding 529-163 chr4 106860522 106860721 + 3 NA Intergenic L1MCc|LINE|L1 175692 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 394-21 chr1 172329001 172329211 + 3 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -91579 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 447-138 chr2 162519277 162519505 + 3 NA intron (NM_033272, intron 3 of 15) intron (NM_033272, intron 3 of 15) 175023 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 823-4 chr1 200468721 200469204 + 3 NA Intergenic Intergenic -58926 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 320-211 chr17 66026236 66026464 + 3 NA intron (NM_001353129, intron 16 of 26) intron (NM_001353129, intron 16 of 26) 165542 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 381-109 chr14 75535365 75535523 + 3 NA intron (NM_006399, intron 2 of 2) L1ME4c|LINE|L1 12975 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 453-296 chr9 28662235 28662391 + 3 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 56992 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 594-53 chr16 51299782 51300187 + 3 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -148712 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 378-29 chr1 176860158 176860387 + 3 NA TTS (NM_004319) TTS (NM_004319) 169173 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 532-165 chr3 78562925 78563231 + 3 NA Intergenic L1MA4|LINE|L1 456381 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 348-38 chr1 235274967 235275140 + 3 NA intron (NR_135074, intron 2 of 24) intron (NR_135074, intron 2 of 24) 52434 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 420-248 chr6 40285227 40285418 + 3 NA Intergenic Intergenic 70684 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 382-245 chr21 36516200 36516377 + 3 NA intron (NM_001146077, intron 1 of 2) Charlie15b|DNA|hAT-Charlie 26496 NM_001146078 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 670-96 chr5 64250217 64250581 + 3 NA intron (NM_001113561, intron 5 of 7) L1M3e|LINE|L1 84556 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 435-158 chr3 130608372 130608661 + 3 NA intron (NM_001102608, intron 20 of 35) (ATATTA)n|Simple_repeat|Simple_repeat 48182 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 542-239 chr9 96025771 96026092 + 3 NA Intergenic Intergenic -4120 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 400-359 chr8 144915416 144915577 + 3 NA Intergenic LTR49-int|LTR|ERV1 -13319 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 492-108 chr17 62710199 62710457 + 3 NA intron (NR_147886, intron 2 of 2) intron (NR_147886, intron 2 of 2) 4122 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 535-257 chr9 78576710 78576990 + 3 NA Intergenic Intergenic 279725 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 494-194 chr3 193475403 193475646 + 3 NA intron (NM_032279, intron 8 of 29) L1MC5|LINE|L1 -77689 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 293-401 chr7 41525178 41525318 + 3 NA Intergenic Intergenic -168671 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 580-113 chr3 75207130 75207365 + 3 NA Intergenic L1MDa|LINE|L1 -7229 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 288-312 chr5 10009150 10009378 + 3 NA Intergenic L1PREC2|LINE|L1 -105440 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 695-21 chr10 133484501 133484986 + 3 NA Intergenic L1MA4A|LINE|L1 30815 NR_149718 619207 Hs.659384 NM_001033584 ENSG00000214279 SCART1 - scavenger receptor family member expressed on T cells 1 pseudo 708-77 chr7 53279629 53280041 + 3 NA Intergenic Intergenic 244202 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 573-103 chr20 6731047 6731269 + 3 NA non-coding (NR_146909, exon 3 of 3) non-coding (NR_146909, exon 3 of 3) 4978 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 783-82 chr9 96739764 96740202 + 3 NA Intergenic Intergenic 14162 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 561-138 chr3 158017270 158017665 + 3 NA Intergenic MIR|SINE|MIR 88696 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 592-38 chr12 112751017 112751333 + 3 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -40363 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 530-88 chr16 17978141 17978497 + 3 NA Intergenic L2a|LINE|L2 354343 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 651-25 chr11 75969224 75969628 + 3 NA intron (NM_003369, intron 7 of 14) intron (NM_003369, intron 7 of 14) 154216 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 591-9 chr10 21772427 21772669 + 3 NA intron (NM_022365, intron 9 of 11) L1ME2|LINE|L1 231182 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 412-64 chr12 14474883 14475115 + 3 NA intron (NM_181352, intron 10 of 14) intron (NM_181352, intron 10 of 14) 89718 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 559-128 chr3 173463029 173463349 + 3 NA intron (NM_014932, intron 2 of 6) intron (NM_014932, intron 2 of 6) 65445 NM_001365931 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 900-28 chr3 118365635 118366083 + 3 NA Intergenic L1M4b|LINE|L1 -275909 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 458-159 chr21 32072482 32072644 + 3 NA Intergenic (ATGG)n|Simple_repeat|Simple_repeat 13732 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 224-306 chr8 3197891 3197979 + 3 NA intron (NM_033225, intron 33 of 69) intron (NM_033225, intron 33 of 69) -469484 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 1048-3 chr1 189269775 189270340 + 3 NA Intergenic AluSp|SINE|Alu 1205953 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 828-8 chr10 48974951 48975380 + 3 NA intron (NM_020945, intron 58 of 61) intron (NM_020945, intron 58 of 61) 10422 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 491-142 chr20 8896290 8896618 + 3 NA Intergenic Intergenic 65269 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 433-162 chr21 44073004 44073259 + 3 NA intron (NM_003274, intron 7 of 22) intron (NM_003274, intron 7 of 22) -1193 NM_001351709 7109 Hs.126221 NM_003274 ENSG00000160218 TRAPPC10 EHOC-1|EHOC1|GT334|TMEM1|TRS130|TRS30 trafficking protein particle complex 10 protein-coding 475-106 chr17 10572110 10572387 + 3 NA intron (NR_125367, intron 3 of 10) LTR49|LTR|ERV1 -22590 NM_017534 4620 Hs.667534 NM_017534 ENSG00000125414 MYH2 IBM3|MYH2A|MYHSA2|MYHas8|MYPOP|MyHC-2A|MyHC-IIa myosin heavy chain 2 protein-coding 313-296 chr2 227991973 227992114 + 3 NA intron (NM_030623, intron 8 of 10) intron (NM_030623, intron 8 of 10) 120412 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 629-113 chr6 48923161 48923511 + 3 NA Intergenic L1M5|LINE|L1 539917 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 721-75 chr6 142674366 142674776 + 3 NA Intergenic Intergenic -36682 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 496-270 chr7 117658093 117658438 + 3 NA intron (NM_000492, intron 24 of 26) intron (NM_000492, intron 24 of 26) -93589 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 647-66 chr3 116877273 116877563 + 3 NA Intergenic Intergenic -27051 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 489-84 chr14 96015979 96016169 + 3 NA Intergenic L1ME3G|LINE|L1 -23250 NM_001282464 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 1013-2 chr15 58125194 58125727 + 3 NA Intergenic L1ME4b|LINE|L1 -12709 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 418-14 chr1 192243120 192243322 + 3 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -73771 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 464-7 chr1 90597590 90597837 + 3 NA Intergenic LTR53B|LTR|ERVL -60037 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 546-117 chr2 150238034 150238340 + 3 NA intron (NR_146972, intron 2 of 2) ERV3-16A3_I-int|LTR|ERVL 18820 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 713-33 chr19 32153916 32154479 + 3 NA Intergenic AluJb|SINE|Alu -48281 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 456-291 chr7 4119941 4120138 + 3 NA intron (NM_152744, intron 25 of 44) L1MEd|LINE|L1 -9646 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 361-309 chr3 163736660 163736857 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -433457 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 538-134 chr20 9902276 9902569 + 3 NA Intergenic Intergenic -63346 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 375-182 chr18 32743158 32743321 + 3 NA intron (NM_020805, intron 2 of 8) intron (NM_020805, intron 2 of 8) 29784 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 759-11 chr11 25967868 25968307 + 3 NA Intergenic Intergenic -221036 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 487-74 chr13 58066694 58066907 + 3 NA Intergenic L1ME3A|LINE|L1 -99027 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 461-97 chr16 51041082 51041343 + 3 NA intron (NR_039672, intron 2 of 6) MLT1G3|LTR|ERVL-MaLR 23454 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 418-145 chr22 26965716 26965927 + 3 NA Intergenic Intergenic 62529 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 650-58 chr2 117728058 117728471 + 3 NA Intergenic Intergenic -86427 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 679-81 chr4 100464793 100465055 + 3 NA intron (NM_016242, intron 4 of 11) L1MB7|LINE|L1 53098 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 586-85 chr20 19541177 19541453 + 3 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -256719 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 980 chr1 45462933 45463428 + 3 NA intron (NM_007170, intron 1 of 10) L1MA3|LINE|L1 27983 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 469-81 chr14 50174120 50174414 + 3 NA intron (NM_006939, intron 8 of 22) intron (NM_006939, intron 8 of 22) 57311 NM_006939 6655 Hs.291533 NM_006939 ENSG00000100485 SOS2 NS9|SOS-2 SOS Ras/Rho guanine nucleotide exchange factor 2 protein-coding 745-12 chr14 26714919 26715458 + 3 NA intron (NR_147061, intron 2 of 6) intron (NR_147061, intron 2 of 6) -94160 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 566-133 chr3 138547135 138547367 + 3 NA intron (NM_001288967, intron 2 of 13) intron (NM_001288967, intron 2 of 13) 44705 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 333-222 chr2 14528133 14528386 + 3 NA Intergenic Intergenic -104458 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 378-235 chr2 109256728 109256973 + 3 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) 56775 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 588-110 chr4 62329235 62329589 + 3 NA Intergenic Intergenic -167647 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 547-197 chr5 163855696 163856047 + 3 NA Intergenic Intergenic 350252 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 414-342 chr8 141688664 141688917 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 97523 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 813-6 chr11 93972387 93972688 + 3 NA Intergenic HAL1|LINE|L1 -48817 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 1452-5 chr19 53237481 53238273 + 3 NA exon (NM_182609, exon 5 of 5) exon (NM_182609, exon 5 of 5) 16973 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 569-108 chr2 227848038 227848302 + 3 NA Intergenic Intergenic -23206 NR_138459 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 1028-17 chr8 127310064 127310683 + 3 NA intron (NR_117100, intron 5 of 5) L1M5|LINE|L1 65736 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 492-7 chr1 89287363 89287590 + 3 NA Intergenic L2c|LINE|L2 2886 NR_077244 729930 Hs.745054 NR_077244 LOC729930 - chromosome 11 open reading frame 74 pseudogene pseudo 466-167 chr22 49292413 49292663 + 3 NA Intergenic Intergenic 250928 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 480-277 chr7 61773978 61774142 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1529996 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 250-173 chr18 2804121 2804244 + 3 NA 3' UTR (NM_015295, exon 48 of 48) 3' UTR (NM_015295, exon 48 of 48) -42824 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 638-56 chr17 69025548 69025977 + 3 NA intron (NM_080283, intron 16 of 38) MIR|SINE|MIR 21048 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 331-103 chr11 102352892 102353098 + 3 NA intron (NM_001256163, intron 3 of 8) Charlie21a|DNA|hAT-Charlie 5621 NM_001256163 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 692-41 chr18 31283788 31284173 + 3 NA Intergenic L1PA11|LINE|L1 -34180 NM_001942 1828 Hs.2633 NM_001942 ENSG00000134760 DSG1 CDHF4|DG1|DSG|EPKHE|EPKHIA|PPKS1|SPPK1 desmoglein 1 protein-coding 569-190 chrUn_GL000216v2 142431 142663 + 3 NA NA BSR/Beta|Satellite|Satellite NA NA 768-10 chr11 112850182 112850599 + 3 NA Intergenic L1M5|LINE|L1 -111030 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 496-40 chr10 91181418 91181671 + 3 NA intron (NM_001257101, intron 1 of 9) L1PA13|LINE|L1 18532 NR_046435 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 264-33 chr10 11639077 11639205 + 3 NA Intergenic Intergenic -27352 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 202-16 chr1 199814413 199814540 + 3 NA Intergenic L2a|LINE|L2 -213234 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 400-20 chr1 187972396 187972559 + 3 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 528849 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 643-77 chr3 136899014 136899391 + 3 NA intron (NM_001291999, intron 1 of 3) intron (NM_001291999, intron 1 of 3) -31300 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 783-45 chr2 182534061 182534361 + 3 NA Intergenic L1ME4a|LINE|L1 -11366 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 507-88 chr14 78142608 78142856 + 3 NA Intergenic Intergenic -27641 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 1202-6 chr4 30421713 30422253 + 3 NA Intergenic Intergenic -298386 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 659-79 chr4 42788923 42789179 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -104215 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 559-91 chr2 61132586 61132898 + 3 NA intron (NM_001330435, intron 20 of 21) L1MB5|LINE|L1 12233 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 440-57 chr12 132916342 132916549 + 3 NA Intergenic L1MD2|LINE|L1 28603 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 467-97 chr16 6745317 6745546 + 3 NA intron (NM_018723, intron 3 of 15) L1MEc|LINE|L1 -28378 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 446-167 chr20 43304018 43304224 + 3 NA Intergenic Intergenic -114215 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 194-149 chr4 98984540 98984680 + 3 NA Intergenic Intergenic -11111 NM_015143 23173 Hs.480364 NM_015143 ENSG00000164024 METAP1 MAP1A|MetAP1A methionyl aminopeptidase 1 protein-coding 485-311 chr9 84236144 84236391 + 3 NA Intergenic X7C_LINE|LINE|CR1 104491 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 770 chr1 111678236 111678676 + 3 NA intron (NM_001370217, intron 1 of 7) Tigger3a|DNA|TcMar-Tigger 13662 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 331-501 chr7 65279701 65279845 + 3 NA Intergenic L1MB2|LINE|L1 -94026 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 563-134 chr4 20077047 20077474 + 3 NA Intergenic MIRc|SINE|MIR -174645 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 536-11 chr1 107166435 107166687 + 3 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 18492 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 1084 chr1 173151788 173152351 + 3 NA Intergenic L1MA9|LINE|L1 53463 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 317-17 chr1 93153269 93153377 + 3 NA non-coding (NR_030761, exon 5 of 5) non-coding (NR_030761, exon 5 of 5) 27090 NR_030761 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 412-257 chr5 61923611 61923824 + 3 NA Intergenic Intergenic -188019 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 428-162 chr21 30095974 30096232 + 3 NA Intergenic L1PA16|LINE|L1 70702 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 360-33 chr10 44085583 44085821 + 3 NA Intergenic Intergenic 173300 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 232-194 chr2 160543014 160543145 + 3 NA Intergenic L1M7|LINE|L1 -49272 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 502-180 chr3 86295802 86296113 + 3 NA Intergenic Intergenic -185986 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 310-144 chr14 86690046 86690219 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -215646 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 471-89 chr14 86572986 86573227 + 3 NA Intergenic Intergenic -332672 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 288-47 chr10 45579017 45579201 + 3 NA intron (NM_145021, intron 1 of 6) L1MC4|LINE|L1 15797 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 673-92 chr5 5965791 5966117 + 3 NA Intergenic Intergenic 371338 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 549-217 chr8 136718816 136719266 + 3 NA intron (NR_147196, intron 2 of 5) HAL1|LINE|L1 188243 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 338-530 chr8 38648485 38648641 + 3 NA Intergenic Intergenic -47306 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 742-61 chr4 71590995 71591386 + 3 NA Intergenic Intergenic 192889 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 769-5 chr10 29845869 29846293 + 3 NA Intergenic MLT2B4|LTR|ERVL -109145 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 392-334 chr8 124989913 124990102 + 3 NA Intergenic ERVL-int|LTR|ERVL 8191 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 319-266 chr2 152284502 152284714 + 3 NA Intergenic LTR16E2|LTR|ERVL -50566 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 318-39 chr1 208856279 208856439 + 3 NA Intergenic L2a|LINE|L2 -116095 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 461-191 chr4 57602341 57602561 + 3 NA Intergenic Intergenic 176579 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 398-85 chr13 41277359 41277597 + 3 NA intron (NM_001354073, intron 1 of 14) LTR8A|LTR|ERV1 -13902 NM_004294 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 217-306 chr5 115178762 115178947 + 3 NA intron (NM_001017398, intron 1 of 1) intron (NM_001017398, intron 1 of 1) 1440 NM_018700 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 1093-3 chr16 3298205 3298862 + 3 NA TTS (NM_033208) TTS (NM_033208) -6873 NM_153028 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 387-240 chr3 190484482 190484745 + 3 NA Intergenic Intergenic -29472 NM_001364880 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 457-91 chr17 52665813 52666104 + 3 NA Intergenic L1M3b|LINE|L1 -196163 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 566-182 chr7 64469012 64469317 + 3 NA Intergenic Intergenic 35471 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 401-181 chr2 228296845 228297068 + 3 NA Intergenic L1MDa|LINE|L1 -115269 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 882-26 chr20 40005429 40005790 + 3 NA intron (NR_109937, intron 1 of 2) intron (NR_109937, intron 1 of 2) 1148 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 398-351 chr8 78848417 78848571 + 3 NA Intergenic MER103C|DNA|hAT-Charlie 10965 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 363-423 chr7 88635436 88635618 + 3 NA Intergenic MER67C|LTR|ERV1 -124173 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 748-52 chr2 213689467 213689986 + 3 NA intron (NR_047660, intron 9 of 14) L1MEc|LINE|L1 -68341 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 779-42 chr5 23138252 23138730 + 3 NA Intergenic Intergenic -285147 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 865-17 chr16 60097150 60097458 + 3 NA Intergenic MLT2A1|LTR|ERVL 241951 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 726-56 chr4 43955419 43955818 + 3 NA Intergenic Intergenic -61243 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 504-140 chr2 169411855 169412114 + 3 NA Intergenic Intergenic -49450 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 762-61 chr6 81762169 81762510 + 3 NA Intergenic Intergenic -9658 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 474-233 chr5 72523180 72523437 + 3 NA Intergenic L1MEg|LINE|L1 -15898 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 669-85 chr5 13042462 13042818 + 3 NA Intergenic L1M1|LINE|L1 -9754 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 912-5 chr1 187834772 187835468 + 3 NA Intergenic L1MC2|LINE|L1 391492 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 378-21 chr1 117747875 117748071 + 3 NA Intergenic L1M5|LINE|L1 141925 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 339-542 chr7 110101033 110101255 + 3 NA Intergenic L1PB1|LINE|L1 -140931 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 777-47 chr3 159021771 159022264 + 3 NA Intergenic L1PA16|LINE|L1 -47235 NM_001197113 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 459-86 chr14 83141025 83141214 + 3 NA Intergenic Intergenic 498487 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1013-16 chr8 36232825 36233338 + 3 NA Intergenic Intergenic -522761 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 814-51 chr5 166837979 166838493 + 3 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat 88134 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 701-60 chr3 18964307 18964625 + 3 NA Intergenic Intergenic -184044 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 330-174 chr15 80477599 80477795 + 3 NA intron (NM_014862, intron 5 of 18) MLT1B|LTR|ERVL-MaLR 73315 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 407-307 chr7 101580092 101580288 + 3 NA Intergenic L2a|LINE|L2 -11184 NR_103747 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 383-78 chr12 40627972 40628194 + 3 NA Intergenic MER50B|LTR|ERV1 -64356 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 470-175 chr3 65658011 65658336 + 3 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -235643 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 662-75 chr5 73545083 73545416 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 20390 NM_023039 57763 Hs.239154 NM_023039 ENSG00000164331 ANKRA2 ANKRA ankyrin repeat family A member 2 protein-coding 377-130 chr14 86947362 86947499 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 41652 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 853-33 chr6 49928549 49928931 + 3 NA Intergenic MIR3|SINE|MIR 20704 NR_163261 403339 Hs.745543 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 pseudo 1096-6 chr11 73111207 73112005 + 3 NA intron (NM_014824, intron 2 of 19) L1MA3|LINE|L1 30712 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 826-17 chr12 40991867 40992306 + 3 NA intron (NM_001843, intron 16 of 23) intron (NM_001843, intron 16 of 23) 83729 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 390-200 chr2 163881988 163882208 + 3 NA Intergenic LTR40b|LTR|ERVL -146090 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 346-315 chr3 67083412 67083633 + 3 NA Intergenic Intergenic 85215 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 298-468 chr8 117269122 117269306 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 134219 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 738-56 chr6 48866813 48867331 + 3 NA Intergenic Intergenic 596181 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 521-202 chr5 117908926 117909161 + 3 NA intron (NR_104997, intron 1 of 2) L1M6|LINE|L1 178682 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 457-164 chr3 137583824 137583990 + 3 NA Intergenic L1M5|LINE|L1 -180408 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 544-212 chr7 53683333 53683612 + 3 NA intron (NR_038371, intron 5 of 5) L1MC3|LINE|L1 128459 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 438-166 chr3 21831780 21832135 + 3 NA Intergenic Intergenic -80747 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 409-114 chr17 73568371 73568580 + 3 NA intron (NM_001144952, intron 1 of 44) L1MEb|LINE|L1 54792 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 833-23 chr3 87782497 87782975 + 3 NA Intergenic L1MA7|LINE|L1 -9970 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 500-135 chr2 86422376 86422707 + 3 NA Intergenic Intergenic -18830 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 422-164 chr2 241586540 241586755 + 3 NA intron (NM_001164356, intron 4 of 4) L1MB7|LINE|L1 -27504 NR_033346 100379249 Hs.621128 NR_033346 BOK-AS1 BOK-AS|BOKAS|NAToB|NCRNA00151 BOK antisense RNA 1 ncRNA 371-302 chr5 15189392 15189619 + 3 NA Intergenic Intergenic 77055 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 413-181 chr3 20610687 20610921 + 3 NA Intergenic L1PA15|LINE|L1 268336 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 507-26 chr10 14291972 14292229 + 3 NA intron (NR_134578, intron 2 of 3) L1ME3B|LINE|L1 38784 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 527-109 chr17 56078120 56078349 + 3 NA Intergenic L1MEb|LINE|L1 -75241 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 1031-7 chr17 69011910 69012684 + 3 NA non-coding (NR_126414, exon 3 of 4) non-coding (NR_126414, exon 3 of 4) 7583 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 831-22 chr2 116709116 116709488 + 3 NA Intergenic Intergenic -1105389 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 497-14 chr10 7178900 7179219 + 3 NA intron (NM_001029880, intron 16 of 20) intron (NM_001029880, intron 16 of 20) 7725 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 801-43 chr5 46075728 46076230 + 3 NA Intergenic ALR/Alpha|Satellite|centr -379599 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1245-4 chr4 103136711 103137211 + 3 NA intron (NM_001813, intron 39 of 48) MIRb|SINE|MIR -37127 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 691-28 chr14 90212996 90213513 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -43299 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 306-203 chr18 6340339 6340494 + 3 NA intron (NM_001365765, intron 1 of 18) L1MA10|LINE|L1 18614 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 327-118 chr12 65689575 65689804 + 3 NA Intergenic Intergenic -47317 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 505-259 chr5 179099815 179100051 + 3 NA Intergenic L1M4|LINE|L1 39560 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 353-88 chr11 81404284 81404454 + 3 NA Intergenic L1MEg|LINE|L1 486467 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 422-171 chr21 20364489 20364696 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -105907 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 394-125 chr16 50415571 50415768 + 3 NA Intergenic L1MB4|LINE|L1 -20536 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 537-72 chr14 83053119 83053461 + 3 NA Intergenic MER66-int|LTR|ERV1 410658 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 382-57 chr11 25865269 25865443 + 3 NA Intergenic Intergenic -323767 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 520-306 chr8 121496895 121497107 + 3 NA Intergenic Intergenic -142345 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 505-132 chr2 14141833 14142061 + 3 NA Intergenic Intergenic 259011 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 495-99 chr19 53627022 53627281 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -4905 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 567-156 chr6 48398153 48398481 + 3 NA Intergenic Intergenic -329628 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 645-18 chr11 114620538 114620942 + 3 NA Intergenic Intergenic -24954 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 753-24 chr15 80812564 80812859 + 3 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) 29362 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 631-53 chr18 1144520 1144950 + 3 NA Intergenic MER11A|LTR|ERVK 214894 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 578-160 chr7 80544046 80544374 + 3 NA Intergenic Intergenic -32146 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 589-111 chr4 81242860 81243219 + 3 NA Intergenic Intergenic -27817 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 904-16 chr16 19824593 19825203 + 3 NA intron (NR_130968, intron 7 of 8) L2a|LINE|L2 59950 NM_016235 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 886-8 chr11 109065041 109065653 + 3 NA Intergenic Intergenic -356843 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 326-492 chr7 42966284 42966467 + 3 NA Intergenic Intergenic 33999 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 751-20 chr14 62654783 62655193 + 3 NA Intergenic Intergenic 390470 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 505-183 chr21 22062226 22062418 + 3 NA intron (NR_109959, intron 2 of 5) intron (NR_109959, intron 2 of 5) 36137 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 668-61 chr22 27256129 27256526 + 3 NA Intergenic Intergenic -31648 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 770-51 chr3 177767662 177768059 + 3 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -49005 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 692-71 chr4 55140478 55140915 + 3 NA Intergenic L1MD|LINE|L1 -15101 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 441 chr1 18251139 18251392 + 3 NA intron (NM_032880, intron 2 of 9) L2a|LINE|L2 143467 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 415-145 chr2 213383330 213383499 + 3 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 98950 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 549-91 chr19 29157652 29157875 + 3 NA Intergenic Intergenic 55388 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 903-19 chr2 36118339 36118828 + 3 NA Intergenic Intergenic 236987 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 1169-4 chr14 84545674 84546179 + 3 NA Intergenic Intergenic -726006 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 548-232 chr8 79230506 79230841 + 3 NA Intergenic L1PB4|LINE|L1 -101515 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 648-43 chr14 68027188 68027661 + 3 NA intron (NM_133509, intron 7 of 10) L1PA16|LINE|L1 203832 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 1063-8 chr13 106886070 106886735 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 232522 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 478-170 chr21 31241204 31241527 + 3 NA intron (NM_001353686, intron 6 of 27) L1M4|LINE|L1 -80425 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 524-34 chr10 94033084 94033274 + 3 NA intron (NM_001288989, intron 2 of 32) MER2|DNA|TcMar-Tigger 39248 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 536-171 chr4 35716956 35717235 + 3 NA Intergenic L1MA4A|LINE|L1 526844 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 444-201 chr5 109057979 109058288 + 3 NA intron (NR_146155, intron 16 of 19) L1MC|LINE|L1 133527 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 527-92 chr14 71462945 71463183 + 3 NA intron (NM_001284247, intron 1 of 23) HERVL-int|LTR|ERVL 24125 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 446-39 chr10 41771975 41772303 + 3 NA Intergenic ALR/Alpha|Satellite|centr 595906 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 749-56 chr2 145217987 145218461 + 3 NA Intergenic Intergenic 550257 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 615-69 chr2 171254813 171255265 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -23746 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 933-33 chr5 63656915 63657420 + 3 NA Intergenic Intergenic 305125 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 427-49 chr12 47515078 47515260 + 3 NA Intergenic Intergenic 100161 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 515-277 chr9 103136293 103136515 + 3 NA Intergenic L1MEc|LINE|L1 141071 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 338-341 chr3 76642946 76643091 + 3 NA Intergenic Intergenic -397081 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 252-427 chr8 107521768 107521908 + 3 NA Intergenic Intergenic -23920 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 301-138 chr15 80356716 80356876 + 3 NA Intergenic L1ME3Cz|LINE|L1 -14991 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 672-58 chr2 117344036 117344334 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -470506 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 758-68 chr6 69464105 69464465 + 3 NA Intergenic Intergenic 332181 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 560-179 chr8 43273009 43273298 + 3 NA Intergenic Intergenic -19289 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 452-240 chr6 157612931 157613246 + 3 NA intron (NM_024630, intron 3 of 8) intron (NM_024630, intron 3 of 8) 83956 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 458-34 chr11 48681379 48681614 + 3 NA Intergenic ALR/Alpha|Satellite|centr 192703 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 698-2 chr1 33494599 33495013 + 3 NA exon (NM_145238, exon 8 of 8) exon (NM_145238, exon 8 of 8) 22161 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 162-26 chr12 33855269 33855330 + 3 NA Intergenic L1MA9|LINE|L1 -167197 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 452-38 chr11 11934698 11935018 + 3 NA intron (NM_001282659, intron 16 of 27) intron (NM_001282659, intron 16 of 27) 73781 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 648-72 chr2 113989593 113990043 + 3 NA intron (NR_148508, intron 1 of 1) intron (NR_148508, intron 1 of 1) -9834 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 314-376 chr3 80929880 80930091 + 3 NA Intergenic Intergenic -63883 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 559-176 chr7 134228059 134228391 + 3 NA intron (NM_144648, intron 16 of 19) L1ME3B|LINE|L1 88705 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 565-193 chr9 81056756 81057177 + 3 NA Intergenic MLT2C2|LTR|ERVL 632569 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 749-5 chr1 158371684 158372187 + 3 NA Intergenic L1MA4A|LINE|L1 18041 NM_030893 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 835-11 chr12 23378058 23378538 + 3 NA Intergenic L1PA17|LINE|L1 202662 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 528-84 chr14 66769134 66769435 + 3 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 261877 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 525-251 chr7 137496785 137496963 + 3 NA intron (NM_001321710, intron 21 of 32) L1PA15|LINE|L1 -153141 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 648-136 chr7 54239426 54239905 + 3 NA Intergenic AluSq2|SINE|Alu -91032 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 722-58 chr4 76445456 76445974 + 3 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 10486 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 616-66 chr18 73619329 73619605 + 3 NA Intergenic Intergenic 294526 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 402-148 chr2 64721908 64722159 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -68120 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 282-464 chr8 120705705 120705882 + 3 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -55460 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 434-211 chr4 70008624 70008815 + 3 NA Intergenic Intergenic 12753 NM_001009181 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 304-314 chr21 35357419 35357542 + 3 NA Intergenic Intergenic 223284 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 330-238 chr19 33852686 33852928 + 3 NA Intergenic L1M2|LINE|L1 55937 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 400-211 chr3 55740296 55740450 + 3 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) -80904 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 329-2 chr1 32912437 32912575 + 3 NA Intergenic L2a|LINE|L2 -11117 NM_001329724 113452 Hs.534521 NM_033504 ENSG00000121900 TMEM54 BCLP|CAC-1|CAC1 transmembrane protein 54 protein-coding 532-55 chr12 125050512 125050715 + 3 NA Intergenic L2a|LINE|L2 -14822 NM_001319840 65985 Hs.656073 NM_023928 ENSG00000081760 AACS ACSF1|SUR-5 acetoacetyl-CoA synthetase protein-coding 225-171 chr2 210997119 210997217 + 3 NA Intergenic Intergenic 379597 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 418-140 chr20 39282164 39282425 + 3 NA Intergenic Intergenic -57546 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 524-206 chr5 109168115 109168381 + 3 NA intron (NR_146155, intron 17 of 19) MER21B|LTR|ERVL 158121 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 419-101 chr15 56130911 56131086 + 3 NA intron (NM_001370561, intron 7 of 11) L1M5|LINE|L1 58934 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 570-77 chr16 51435548 51435901 + 3 NA Intergenic Intergenic -284452 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 415-22 chr1 224939082 224939309 + 3 NA intron (NM_001349912, intron 1 of 5) L1MA4A|LINE|L1 9520 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 642-3 chr1 106040775 106041092 + 3 NA Intergenic L2c|LINE|L2 -12680 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 292-220 chr2 101742258 101742429 + 3 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 44636 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 538-202 chr5 96234882 96235233 + 3 NA intron (NR_130776, intron 1 of 4) MLT1J|LTR|ERVL-MaLR 155919 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 309-481 chr6 92359858 92360022 + 3 NA Intergenic L1ME1|LINE|L1 -669512 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 470-3 chr1 40489523 40489803 + 3 NA intron (NM_001320178, intron 5 of 5) MSTB|LTR|ERVL-MaLR 12373 NM_198494 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 372-210 chr19 44194710 44194904 + 3 NA Intergenic MER65-int|LTR|ERV1 -17721 NM_001289171 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 343-17 chr1 92932699 92932837 + 3 NA intron (NM_001006605, intron 1 of 4) L1MC1|LINE|L1 28694 NM_001006605 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 370-288 chr21 35890384 35890567 + 3 NA Intergenic Intergenic 4030 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 583-36 chr11 92955581 92955869 + 3 NA Intergenic L1MA4|LINE|L1 -13898 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 599-85 chr3 89243722 89243981 + 3 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 136230 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 687-95 chr5 94232083 94232650 + 3 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -120667 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 331-542 chr8 128444741 128444929 + 3 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 119844 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 525-28 chr10 59492680 59492923 + 3 NA Intergenic L1M2b|LINE|L1 -129620 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 413-277 chr7 46831709 46831899 + 3 NA Intergenic L1MC3|LINE|L1 -134682 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 1116-6 chr2 75085422 75085989 + 3 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) -5107 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 407-91 chr15 60169086 60169261 + 3 NA Intergenic Intergenic 164862 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 486-203 chr3 83398789 83399072 + 3 NA Intergenic L1PBa|LINE|L1 1412788 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 272-432 chr7 116506178 116506316 + 3 NA 3' UTR (NM_198212, exon 2 of 2) 3' UTR (NM_198212, exon 2 of 2) 6201 NM_001206748 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 540-131 chr21 20154072 20154370 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 104464 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 379-393 chrX 68971121 68971339 + 3 NA Intergenic L1MA9|LINE|L1 142233 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 754-83 chr8 136975189 136975726 + 3 NA Intergenic L2c|LINE|L2 438131 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 422-38 chr10 114342970 114343164 + 3 NA intron (NM_001001936, intron 1 of 18) intron (NM_001001936, intron 1 of 18) 61435 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 521-50 chr11 79522042 79522346 + 3 NA Intergenic HAL1b|LINE|L1 -81164 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 500-277 chr7 111575125 111575393 + 3 NA Intergenic L1MA1|LINE|L1 -12742 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 485-100 chr16 83743408 83743626 + 3 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 60459 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 896-41 chr8 128383682 128384147 + 3 NA Intergenic Intergenic 180765 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 877-32 chr7 16109302 16109872 + 3 NA intron (NM_001101426, intron 9 of 9) L1MA7|LINE|L1 -100899 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 590-79 chr2 49392770 49393019 + 3 NA Intergenic L1MA6|LINE|L1 -238367 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 801-55 chr7 85779127 85779684 + 3 NA Intergenic Intergenic 358283 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 546-216 chr7 20261134 20261323 + 3 NA Intergenic Intergenic -35480 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 534-251 chr8 62116841 62117210 + 3 NA Intergenic L1M1|LINE|L1 -131829 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 412-219 chr3 130236164 130236453 + 3 NA intron (NR_027898, intron 11 of 22) intron (NR_027898, intron 11 of 22) 23488 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 298-330 chr4 78251451 78251574 + 3 NA intron (NM_001166133, intron 4 of 41) L1MA9|LINE|L1 -37473 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 532-137 chr2 194210761 194211084 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -133347 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 588-98 chr3 69521841 69522144 + 3 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat -135904 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 548-242 chr8 130637054 130637271 + 3 NA Intergenic MER63A|DNA|hAT-Blackjack -193488 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 474-107 chr17 11565001 11565283 + 3 NA Intergenic Intergenic -33328 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 572-110 chr3 99565051 99565399 + 3 NA Intergenic L1PA16|LINE|L1 -73369 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 429-199 chr3 109336822 109337061 + 3 NA intron (NM_001348929, intron 1 of 5) AluSp|SINE|Alu 576 NM_001348928 55211 Hs.317659 NM_018189 ENSG00000121570 DPPA4 2410091M23Rik developmental pluripotency associated 4 protein-coding 423-193 chr4 53355088 53355328 + 3 NA intron (NM_152540, intron 1 of 8) MLT2A1|LTR|ERVL 10853 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 601-42 chr14 78750583 78750946 + 3 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 347045 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 485-238 chr5 167456446 167456773 + 3 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -117050 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 778-48 chr3 162374985 162375499 + 3 NA Intergenic L1MEf|LINE|L1 878434 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 385-132 chr17 42623014 42623190 + 3 NA Intergenic Intergenic 13419 NM_001070 7283 Hs.279669 NM_001070 ENSG00000131462 TUBG1 CDCBM4|GCP-1|TUBG|TUBGCP1 tubulin gamma 1 protein-coding 460-149 chr2 128847785 128848029 + 3 NA Intergenic LTR35B|LTR|ERV1 -16693 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 473-308 chrX 87948305 87948540 + 3 NA Intergenic Intergenic 430620 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 518-281 chr7 92899479 92899735 + 3 NA intron (NR_110087, intron 2 of 2) L1MB8|LINE|L1 -62980 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 456-27 chr10 11339025 11339219 + 3 NA intron (NR_126062, intron 1 of 2) intron (NR_126062, intron 1 of 2) 5552 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 630-81 chr3 28216046 28216486 + 3 NA Intergenic Intergenic -25353 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 474-248 chr5 179097132 179097423 + 3 NA Intergenic L1M5|LINE|L1 36904 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 660-122 chrX 93264477 93264827 + 3 NA Intergenic PRIMAX-int|LTR|ERV1 408926 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 610-139 chr5 64020563 64020791 + 3 NA Intergenic AluSz|SINE|Alu -58385 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 382-86 chr13 22570271 22570487 + 3 NA Intergenic Intergenic 327802 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 402-128 chr18 77531785 77532024 + 3 NA Intergenic L1M5|LINE|L1 282056 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 582-93 chr21 28847872 28848211 + 3 NA Intergenic L1PA15|LINE|L1 37326 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 242-366 chr7 34886852 34887022 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X -52606 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 498-255 chr7 94371704 94371943 + 3 NA intron (NR_147206, intron 5 of 5) MLT1B|LTR|ERVL-MaLR 20369 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 731-7 chr1 240163573 240164001 + 3 NA intron (NM_020066, intron 2 of 17) L1MEg|LINE|L1 71904 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 557-31 chr11 33601645 33601919 + 3 NA intron (NM_012194, intron 13 of 20) intron (NM_012194, intron 13 of 20) 98958 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 553-100 chr2 5045595 5045802 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -389476 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 421-52 chr12 37937704 37937934 + 3 NA Intergenic ALR/Alpha|Satellite|centr -378955 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 477-45 chr10 77454456 77454666 + 3 NA intron (NM_001271519, intron 1 of 28) L3|LINE|CR1 103689 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 488-21 chr10 19080687 19080945 + 3 NA intron (NM_001142308, intron 2 of 39) L1PA11|LINE|L1 32015 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 543-119 chr2 39561047 39561368 + 3 NA intron (NR_037875, intron 5 of 5) L1MA4A|LINE|L1 -104291 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 470-293 chr9 122639038 122639347 + 3 NA Intergenic L1ME3E|LINE|L1 -9657 NM_001004450 347169 Hs.553710 NM_001004450 ENSG00000280094 OR1B1 OR9-26|OR9-B olfactory receptor family 1 subfamily B member 1 (gene/pseudogene) protein-coding 352-451 chr6 47674425 47674646 + 3 NA intron (NM_153839, intron 3 of 10) intron (NM_153839, intron 3 of 10) 18063 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 316-450 chr5 105463737 105463964 + 3 NA Intergenic Intergenic 364376 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 581-16 chr10 64390061 64390430 + 3 NA Intergenic L1MA7|LINE|L1 -435283 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 396-137 chr18 66801795 66801996 + 3 NA Intergenic Intergenic -197805 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 297-339 chr4 88915615 88915764 + 3 NA intron (NM_014883, intron 5 of 23) MSTB1|LTR|ERVL-MaLR -92328 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 512-94 chr16 17892390 17892643 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -421556 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 136-49 chr2 233945016 233945096 + 3 NA intron (NM_024080, intron 6 of 25) intron (NM_024080, intron 6 of 25) 27683 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 411-39 chr10 100293698 100293902 + 3 NA intron (NM_016112, intron 9 of 15) intron (NM_016112, intron 9 of 15) -7088 NM_001282437 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 502-290 chrX 76189052 76189313 + 3 NA Intergenic L1MA10|LINE|L1 16120 NM_016500 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 649-16 chr11 97570316 97570619 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 1062042 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 789-8 chr11 72913577 72913935 + 3 NA intron (NM_014824, intron 9 of 19) L1PA12|LINE|L1 99345 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 502-9 chr1 87733350 87733638 + 3 NA Intergenic Intergenic -361839 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 800-55 chr5 178962338 178962790 + 3 NA intron (NM_001178089, intron 4 of 4) L1ME3A|LINE|L1 21366 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 234-382 chr8 49895383 49895480 + 3 NA Intergenic Intergenic -14365 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 883-23 chr22 34766672 34767018 + 3 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 231071 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 850-29 chr3 46838327 46838798 + 3 NA Intergenic Cheshire|DNA|hAT-Charlie -4467 NR_160554 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 261-384 chr8 113254761 113254946 + 3 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 122299 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 579-177 chr8 133724581 133724810 + 3 NA Intergenic Intergenic -40629 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 873-32 chr6 114455566 114456000 + 3 NA Intergenic LTR33B|LTR|ERVL -392906 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 374-72 chr12 72066126 72066389 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 127412 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 251-132 chr18 1395580 1395724 + 3 NA Intergenic Intergenic -36023 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 631-33 chr13 91117668 91117953 + 3 NA Intergenic Intergenic -28193 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 987-3 chr16 31756825 31757301 + 3 NA intron (NM_001130913, intron 4 of 4) intron (NM_001130913, intron 4 of 4) 43834 NM_001130913 124411 Hs.528826 NM_001004300 ENSG00000197302 ZNF720 - zinc finger protein 720 protein-coding 889-38 chr8 136844076 136844532 + 3 NA intron (NR_147196, intron 4 of 5) L1PB1|LINE|L1 313506 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 525-97 chr18 7125878 7126111 + 3 NA Intergenic AluSx4|SINE|Alu -8197 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 637-88 chr4 122423675 122424009 + 3 NA intron (NM_001159285, intron 11 of 11) L1MB7|LINE|L1 32653 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 376-15 chr1 114416201 114416360 + 3 NA intron (NM_015906, intron 11 of 19) intron (NM_015906, intron 11 of 19) 94923 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 558-36 chr11 86923494 86923764 + 3 NA intron (NR_120592, intron 2 of 2) intron (NR_120592, intron 2 of 2) 31766 NM_012193 8322 Hs.591968 NM_012193 ENSG00000174804 FZD4 CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4 frizzled class receptor 4 protein-coding 524-19 chr1 215142281 215142544 + 3 NA intron (NM_001017424, intron 3 of 6) intron (NM_001017424, intron 3 of 6) 59675 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 1007-10 chr4 95921794 95922422 + 3 NA Intergenic MIR|SINE|MIR 82015 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 393-70 chr12 30361750 30361917 + 3 NA Intergenic HERV35I-int|LTR|ERV1 315411 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 537-170 chr4 52638375 52638591 + 3 NA intron (NM_001286767, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 18056 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 378-414 chr7 88490258 88490424 + 3 NA Intergenic Intergenic -183447 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 405-94 chr15 47262498 47262781 + 3 NA intron (NM_001198999, intron 1 of 19) THE1C|LTR|ERVL-MaLR 78550 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 582-156 chr8 103613053 103613312 + 3 NA intron (NM_001348497, intron 1 of 22) L1MA2|LINE|L1 -111272 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 463-59 chr11 81805474 81805709 + 3 NA Intergenic Intergenic 85245 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 500-30 chr10 67351963 67352309 + 3 NA intron (NM_001127384, intron 5 of 17) L2c|LINE|L2 51274 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 692-50 chr2 145295963 145296418 + 3 NA Intergenic Intergenic 628223 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 634-80 chr2 129408013 129408357 + 3 NA Intergenic L1M4|LINE|L1 -134294 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 886-11 chr15 27064075 27064529 + 3 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 93121 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 824-52 chr8 139552299 139552774 + 3 NA Intergenic Intergenic 150587 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 146-41 chr2 84992128 84992204 + 3 NA intron (NM_020122, intron 1 of 6) MIR|SINE|MIR 21005 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 495-255 chr8 91261835 91262136 + 3 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 12666 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 443-65 chr12 40279929 40280192 + 3 NA intron (NM_198578, intron 18 of 50) intron (NM_198578, intron 18 of 50) 55063 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 514-58 chr12 33295267 33295567 + 3 NA Intergenic Intergenic 144402 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 880-15 chr17 67650320 67650855 + 3 NA intron (NM_181671, intron 6 of 9) AluSz|SINE|Alu -67246 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 468-99 chr16 13283952 13284133 + 3 NA Intergenic Intergenic 382444 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 428-157 chr20 42239075 42239387 + 3 NA intron (NM_133170, intron 15 of 31) MIR|SINE|MIR -446252 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 418-240 chr6 84922253 84922466 + 3 NA Intergenic MIR|SINE|MIR -157761 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 537-16 chr1 186613369 186613646 + 3 NA Intergenic Tigger4|DNA|TcMar-Tigger 66916 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 472-278 chr6 103067424 103067737 + 3 NA Intergenic L1MA4|LINE|L1 1668595 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 633-31 chr12 34064325 34064646 + 3 NA Intergenic Intergenic 41989 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 430-195 chr3 94525173 94525441 + 3 NA Intergenic Intergenic -412956 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 449-251 chr7 12446675 12446857 + 3 NA Intergenic Intergenic -42825 NR_144534 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 679-47 chr18 7321524 7321837 + 3 NA Intergenic Charlie7a|DNA|hAT-Charlie 90576 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 550-201 chr6 65453050 65453365 + 3 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 126597 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 415-151 chr2 241013678 241013858 + 3 NA intron (NM_001080437, intron 1 of 31) L1MA9|LINE|L1 15150 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 654-42 chr15 71065995 71066431 + 3 NA Intergenic Tigger8|DNA|TcMar-Tigger -75236 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 922-8 chr12 34421113 34421604 + 3 NA Intergenic ALR/Alpha|Satellite|centr 398862 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 578-2 chr1 13943271 13943565 + 3 NA Intergenic AluJr4|SINE|Alu 194003 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 260-210 chr2 76640334 76640480 + 3 NA Intergenic MIRb|SINE|MIR -345558 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 489-89 chr15 59342477 59342684 + 3 NA intron (NM_004998, intron 1 of 27) L1M1|LINE|L1 30291 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 379-210 chr3 9408594 9408828 + 3 NA intron (NM_001080517, intron 1 of 22) L1MC5|LINE|L1 11011 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 470-84 chr15 87460865 87461184 + 3 NA Intergenic L2a|LINE|L2 -115905 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 903-41 chr8 124250650 124251318 + 3 NA Intergenic AluSx1|SINE|Alu -3586 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 457-136 chr2 241021532 241021780 + 3 NA intron (NM_001080437, intron 1 of 31) L1MB8|LINE|L1 23038 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 858-10 chr11 96564657 96565125 + 3 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 56466 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 420-87 chr15 27484689 27484909 + 3 NA intron (NM_033223, intron 6 of 9) L1MC3|LINE|L1 -323480 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 141-83 chr8 65242582 65242631 + 3 NA Intergenic MER94|DNA|hAT-Blackjack -62266 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 356-497 chr8 141485999 141486233 + 3 NA intron (NR_102364, intron 6 of 26) L1ME2|LINE|L1 21113 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 590-60 chr15 100272984 100273389 + 3 NA intron (NM_139057, intron 4 of 21) L1MB3|LINE|L1 68789 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 483-291 chrX 39086291 39086499 + 3 NA Intergenic L1MB3|LINE|L1 240967 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 650-10 chr10 122317897 122318275 + 3 NA intron (NM_001318189, intron 10 of 15) Tigger3b|DNA|TcMar-Tigger 46790 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 630-150 chr9 92567551 92567790 + 3 NA intron (NM_001286969, intron 4 of 6) L1MB3|LINE|L1 -31578 NM_001197295 1842 Hs.117060 NM_001393 ENSG00000106823 ECM2 - extracellular matrix protein 2 protein-coding 476-112 chr17 72250616 72250923 + 3 NA Intergenic Intergenic -92042 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 558-41 chr12 4704734 4704921 + 3 NA intron (NR_110112, intron 1 of 3) intron (NR_110112, intron 1 of 3) 15275 NR_110112 101929549 Hs.663336 NR_110112 ENSG00000255474 GAU1 GALNT8-DT GALNT8 antisense upstream 1 ncRNA 771-52 chr21 27725927 27726428 + 3 NA intron (NR_024357, intron 1 of 3) MER50-int|LTR|ERV1 3798 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 357-270 chr3 58143020 58143178 + 3 NA intron (NM_001164318, intron 31 of 45) intron (NM_001164318, intron 31 of 45) 27536 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 1046-15 chr4 57752256 57752704 + 3 NA Intergenic AluSp|SINE|Alu 326608 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 556-165 chr4 105401759 105402098 + 3 NA intron (NM_176867, intron 1 of 5) Tigger13a|DNA|TcMar-Tigger -49047 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 234-111 chr15 53488323 53488464 + 3 NA Intergenic MIRb|SINE|MIR 52459 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 311-448 chr6 139490321 139490523 + 3 NA Intergenic Intergenic -15826 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 883-35 chr7 16455823 16456222 + 3 NA Intergenic Intergenic 9716 NM_015464 25928 Hs.648106 NM_015464 ENSG00000171243 SOSTDC1 CDA019|DAND7|ECTODIN|USAG1 sclerostin domain containing 1 protein-coding 580-147 chr5 8424797 8425097 + 3 NA intron (NR_039984, intron 2 of 5) L1MD1|LINE|L1 32617 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 315-137 chr14 66208595 66208810 + 3 NA Intergenic MER34B|LTR|ERV1 -277669 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 456-60 chr12 53624479 53624735 + 3 NA intron (NR_073163, intron 1 of 12) intron (NR_073163, intron 1 of 12) 1383 NM_001366563 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 669-13 chr10 70120160 70120452 + 3 NA intron (NM_001198696, intron 5 of 8) intron (NM_001198696, intron 5 of 8) 12519 NM_032797 84883 Hs.650680 NM_032797 ENSG00000042286 AIFM2 AMID|PRG3 apoptosis inducing factor mitochondria associated 2 protein-coding 215-267 chr5 128613645 128613745 + 3 NA Intergenic Charlie20a|DNA|hAT-Charlie -75450 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 592-44 chr14 38697150 38697520 + 3 NA Intergenic L1MA2|LINE|L1 -185261 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 463-6 chr1 57700727 57701005 + 3 NA intron (NM_001353980, intron 3 of 5) L1M1|LINE|L1 -159715 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 435-213 chr5 176969170 176969398 + 3 NA non-coding (NR_146149, exon 6 of 16) non-coding (NR_146149, exon 6 of 16) 37158 NM_016290 51720 Hs.232721 NM_016290 ENSG00000087206 UIMC1 RAP80|X2HRIP110 ubiquitin interaction motif containing 1 protein-coding 562-147 chr3 127890193 127890574 + 3 NA Intergenic Intergenic -24849 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 482-21 chr1 187666125 187666443 + 3 NA Intergenic L1ME3E|LINE|L1 222656 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 1025-12 chr3 182926275 182926680 + 3 NA Intergenic L2a|LINE|L2 54061 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 516-30 chr11 29765259 29765658 + 3 NA Intergenic Intergenic 146656 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 574-176 chr8 28294993 28295264 + 3 NA Intergenic L2c|LINE|L2 -22140 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 177-59 chr16 6774366 6774436 + 3 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 592 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 454-42 chr10 111849514 111849784 + 3 NA Intergenic Intergenic 334116 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 463-18 chr1 100420470 100420719 + 3 NA intron (NM_001319212, intron 4 of 13) intron (NM_001319212, intron 4 of 13) 68088 NM_003672 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 431-242 chr6 39641077 39641329 + 3 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 84205 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 328-4 chr1 38591865 38592045 + 3 NA Intergenic L1M5|LINE|L1 116759 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 321-220 chr16 65323419 65323648 + 3 NA intron (NR_027755, intron 7 of 8) (TATATTA)n|Simple_repeat|Simple_repeat -146960 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 148-31 chr15 62033020 62033077 + 3 NA intron (NM_001018088, intron 5 of 81) intron (NM_001018088, intron 5 of 81) 27399 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 474-171 chr21 22718917 22719198 + 3 NA Intergenic MER21-int|LTR|ERVL -360227 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 474-57 chr12 11824230 11824414 + 3 NA intron (NM_001987, intron 2 of 7) HAL1M8|LINE|L1 174468 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 483-243 chr7 50919754 50920008 + 3 NA Intergenic Intergenic -126428 NM_001371008 509-275 chrX 137720102 137720373 + 3 NA Intergenic Intergenic 154110 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 506-46 chr10 117891834 117892118 + 3 NA Intergenic Intergenic -154845 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 730-61 chr5 118752209 118752659 + 3 NA Intergenic Intergenic 156246 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 656-133 chr8 130629834 130630298 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -186392 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 613-36 chr15 56228488 56228837 + 3 NA intron (NM_001370561, intron 4 of 11) intron (NM_001370561, intron 4 of 11) 15217 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 516-74 chr14 88170301 88170582 + 3 NA Intergenic L1PB4|LINE|L1 100470 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 446-112 chr15 96008228 96008394 + 3 NA Intergenic Intergenic 119530 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 649-121 chr9 82802822 82803249 + 3 NA Intergenic Intergenic 260107 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 366-270 chr3 29874165 29874405 + 3 NA intron (NM_001003792, intron 7 of 13) intron (NM_001003792, intron 7 of 13) 59871 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 928-30 chr7 53260374 53260841 + 3 NA Intergenic L1MB3|LINE|L1 224974 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 484-134 chr2 121162933 121163103 + 3 NA Intergenic L1ME1|LINE|L1 122184 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 345-169 chr15 45909143 45909277 + 3 NA intron (NR_135680, intron 2 of 4) MER65-int|LTR|ERV1 204015 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 285-236 chr2 229449284 229449394 + 3 NA intron (NM_139072, intron 7 of 12) intron (NM_139072, intron 7 of 12) -178052 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 278-121 chr14 82558639 82558812 + 3 NA Intergenic L1ME1|LINE|L1 -83907 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1207-12 chr8 110536670 110537370 + 3 NA Intergenic MIR|SINE|MIR 490413 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 635-46 chr19 28145683 28145985 + 3 NA Intergenic Intergenic -351894 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 382-142 chr17 40156671 40156870 + 3 NA intron (NM_007359, intron 3 of 13) AluJo|SINE|Alu -5163 NR_106926 102466986 NR_106926 ENSG00000284144 MIR6866 hsa-mir-6866 microRNA 6866 ncRNA 777-77 chrX 55268771 55269181 + 3 NA Intergenic MER41-int|LTR|ERV1 -4060 NM_001303613 139793 Hs.163473 NM_001017931 ENSG00000204279 PAGE3 CT16.6|GAGED1|PAGE-3 PAGE family member 3 protein-coding 242-327 chr5 150090607 150090752 + 3 NA intron (NM_005211, intron 1 of 21) intron (NM_005211, intron 1 of 21) 1945 NM_001349736 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 288-199 chr2 101711817 101711968 + 3 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 14185 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 610-177 chr9 11951645 11951997 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -741564 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 1199-8 chr2 115808775 115809579 + 3 NA intron (NM_001321912, intron 20 of 25) intron (NM_001321912, intron 20 of 25) 465362 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 520-85 chr14 47441895 47442123 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -98763 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 543-126 chr2 78536879 78537222 + 3 NA Intergenic L1MD2|LINE|L1 -8481 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 185-121 chr20 31321532 31321596 + 3 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -12979 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 356-186 chr16 77497861 77498032 + 3 NA Intergenic Intergenic -62912 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 574-102 chr21 31713021 31713380 + 3 NA intron (NM_020706, intron 1 of 19) intron (NM_020706, intron 1 of 19) 18918 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 604-144 chr6 133349089 133349346 + 3 NA intron (NM_172103, intron 2 of 18) L2a|LINE|L2 107718 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 412-344 chr9 79393523 79393823 + 3 NA Intergenic Intergenic -178100 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 414-316 chr8 22964298 22964531 + 3 NA Intergenic Intergenic -22837 NM_001160036 23221 Hs.372688 NM_015178 ENSG00000008853 RHOBTB2 DBC2|EIEE64 Rho related BTB domain containing 2 protein-coding 707-16 chr12 114137634 114137917 + 3 NA Intergenic Intergenic 103995 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 458-187 chr4 101427076 101427369 + 3 NA Intergenic Intergenic 79445 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 770-41 chr2 125668497 125668936 + 3 NA Intergenic Intergenic 449269 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 252-94 chr12 62864297 62864474 + 3 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 70765 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 452-212 chr5 67382178 67382513 + 3 NA Intergenic Intergenic -185546 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 636-119 chr5 158573873 158574108 + 3 NA Intergenic MIRb|SINE|MIR -164217 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 767-55 chr8 80649031 80649407 + 3 NA intron (NM_001033723, intron 7 of 8) L1PA4|LINE|L1 162993 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 561-103 chr2 129694754 129694964 + 3 NA Intergenic L1MB8|LINE|L1 182632 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 469-172 chr3 26590600 26590759 + 3 NA Intergenic Intergenic -32127 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 613-135 chr8 87858996 87859351 + 3 NA Intergenic Intergenic 14842 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 604-165 chr8 118443832 118444163 + 3 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -177004 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 463-259 chr7 19247884 19248181 + 3 NA Intergenic Intergenic -102611 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 438-13 chr1 118365385 118365666 + 3 NA Intergenic Intergenic -180297 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 708-62 chr5 105638823 105639146 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie 539510 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 289-373 chr5 79146552 79146670 + 3 NA Intergenic Intergenic 34802 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 539-81 chr15 87151838 87152087 + 3 NA Intergenic Intergenic -163536 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 568-63 chr15 70073967 70074350 + 3 NA intron (NM_020908, intron 6 of 19) intron (NM_020908, intron 6 of 19) 5310 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 574-17 chr10 128328626 128328878 + 3 NA Intergenic L2b|LINE|L2 42802 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 542-147 chr4 38815042 38815348 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -10404 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 449-257 chr7 83966194 83966447 + 3 NA intron (NM_006080, intron 15 of 16) intron (NM_006080, intron 15 of 16) 228469 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 729-26 chr14 78394097 78394453 + 3 NA intron (NR_073547, intron 4 of 20) L1MD1|LINE|L1 -9444 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 610-59 chr15 98499555 98499864 + 3 NA intron (NM_182562, intron 2 of 6) L1MA5|LINE|L1 14627 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 456-21 chr1 220405714 220405905 + 3 NA Intergenic Intergenic -122327 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 381-282 chr4 106345747 106345901 + 3 NA intron (NM_001142416, intron 6 of 6) A-rich|Low_complexity|Low_complexity 21611 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 295-256 chr20 39136597 39136743 + 3 NA Intergenic Intergenic 88078 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 511-272 chr8 137776255 137776541 + 3 NA Intergenic Intergenic 307147 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 298-512 chrX 63998701 63998880 + 3 NA Intergenic Tigger5b|DNA|TcMar-Tigger 206918 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 521-97 chr16 20321752 20322015 + 3 NA intron (NM_001007240, intron 5 of 11) intron (NM_001007240, intron 5 of 11) 5630 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 906-14 chr12 31933322 31933748 + 3 NA Intergenic MLT2F|LTR|ERVL -25880 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 665-13 chr10 63043418 63043843 + 3 NA Intergenic L1M4|LINE|L1 -89617 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 573-208 chr9 14745710 14745917 + 3 NA intron (NM_001370058, intron 10 of 11) intron (NM_001370058, intron 10 of 11) -23080 NM_005454 9350 Hs.248204 NM_005454 ENSG00000147869 CER1 DAND4 cerberus 1, DAN family BMP antagonist protein-coding 503-19 chr1 181916968 181917268 + 3 NA Intergenic Intergenic 144594 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 409-256 chr5 160005452 160005759 + 3 NA Intergenic Intergenic -3495 NM_001282500 7265 Hs.519718 NM_003314 ENSG00000113312 TTC1 TPR1 tetratricopeptide repeat domain 1 protein-coding 585-115 chr4 141030917 141031165 + 3 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 102428 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 452-191 chr4 93696061 93696306 + 3 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -132570 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 524-154 chr3 90602826 90603084 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1495334 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 732-82 chr6 91886756 91887172 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -196536 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 397-207 chr3 87090441 87090607 + 3 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 1244 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 521-180 chr4 94428476 94428676 + 3 NA Intergenic L1ME1|LINE|L1 -23281 NR_046186 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 328-603 chr9 32220727 32220904 + 3 NA Intergenic L1PA17|LINE|L1 -163788 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 433-207 chr4 100490294 100490511 + 3 NA intron (NM_001159694, intron 1 of 10) Tigger3b|DNA|TcMar-Tigger 27620 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 263-129 chr16 23850667 23850812 + 3 NA intron (NM_002738, intron 2 of 16) L1MA7|LINE|L1 14756 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 573-53 chr12 88817589 88817799 + 3 NA Intergenic L1MD1|LINE|L1 201998 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 487-62 chr12 2114362 2114597 + 3 NA intron (NM_199460, intron 1 of 49).2 MLT1G|LTR|ERVL-MaLR 61194 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 198-190 chr4 177117979 177118086 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X -191842 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 491-13 chr10 19507528 19507843 + 3 NA intron (NM_001142308, intron 31 of 39) intron (NM_001142308, intron 31 of 39) 220865 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 378-99 chr12 18654425 18654713 + 3 NA Intergenic Intergenic 82940 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 475-96 chr16 35782169 35782439 + 3 NA Intergenic ALR/Alpha|Satellite|centr 35752 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 570-129 chr3 2255175 2255436 + 3 NA intron (NM_001206955, intron 1 of 23) L1P3|LINE|L1 16476 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 433-228 chr5 115743054 115743240 + 3 NA Intergenic L1M1|LINE|L1 -70495 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 938-18 chr3 13814081 13814660 + 3 NA Intergenic Intergenic 65701 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 646-86 chr3 59533855 59534205 + 3 NA Intergenic Intergenic 124467 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 705-85 chr5 151809709 151810162 + 3 NA 3' UTR (NM_005754, exon 12 of 12) 3' UTR (NM_005754, exon 12 of 12) -37759 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 612-40 chr14 80331593 80331832 + 3 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -100655 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 464-78 chr15 91355697 91356018 + 3 NA Intergenic L2c|LINE|L2 -107482 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 1342-6 chr6 155523234 155524068 + 3 NA non-coding (NR_134596, exon 3 of 3) non-coding (NR_134596, exon 3 of 3) 8807 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 434-197 chr3 155310753 155311022 + 3 NA Intergenic Tigger8|DNA|TcMar-Tigger -17204 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 356-286 chr20 40205284 40205467 + 3 NA Intergenic Intergenic 200914 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 678-95 chr7 17245941 17246314 + 3 NA Intergenic L1ME3G|LINE|L1 -52525 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 434-235 chr5 155073849 155074055 + 3 NA Intergenic MIR3|SINE|MIR 60197 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 335-426 chr5 59698393 59698600 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 5207 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 346-454 chr7 12835905 12836068 + 3 NA Intergenic Intergenic 148353 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 488-205 chr5 31800244 31800462 + 3 NA intron (NM_178140, intron 2 of 24) MER77|LTR|ERVL 135806 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 537-23 chr10 41744550 41744735 + 3 NA Intergenic ALR/Alpha|Satellite|centr 623403 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 485-220 chr5 37683356 37683554 + 3 NA intron (NM_001345998, intron 10 of 17) L1PA11|LINE|L1 151367 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 760-61 chr5 113312829 113313381 + 3 NA intron (NM_001085377, intron 3 of 18) AluSx3|SINE|Alu -18167 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 751-44 chr3 24044876 24045176 + 3 NA Intergenic Intergenic 58221 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 321-514 chr7 9780792 9780997 + 3 NA Intergenic MIR|SINE|MIR 146624 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 445-115 chr2 22865053 22865381 + 3 NA Intergenic Intergenic 328738 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 355-391 chr5 21782655 21782866 + 3 NA intron (NM_004061, intron 11 of 14) intron (NM_004061, intron 11 of 14) -101694 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 243-205 chr2 52371419 52371528 + 3 NA intron (NR_135239, intron 1 of 2) intron (NR_135239, intron 1 of 2) 825 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 342-486 chr7 52089024 52089233 + 3 NA Intergenic Intergenic -695872 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 910-9 chr12 5351043 5351812 + 3 NA Intergenic L1MB7|LINE|L1 -80681 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 396-160 chr2 51590770 51591003 + 3 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 558285 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 857-29 chr2 125926723 125927334 + 3 NA Intergenic MIRb|SINE|MIR 190957 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 762-51 chr4 168351243 168351738 + 3 NA Intergenic Intergenic -32738 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 536-63 chr12 128604083 128604278 + 3 NA intron (NM_001136103, intron 3 of 8) MLT2B4|LTR|ERVL 219778 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 492-61 chr12 37986063 37986291 + 3 NA Intergenic ALR/Alpha|Satellite|centr -330597 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 751-35 chr2 103621525 103621878 + 3 NA Intergenic L1PA16|LINE|L1 -637272 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 326-458 chr6 66296233 66296474 + 3 NA Intergenic L1ME5|LINE|L1 508474 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 704-33 chr18 4029787 4030293 + 3 NA intron (NM_001242761, intron 2 of 11) AluSg|SINE|Alu 67687 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 593-73 chr2 103095498 103095888 + 3 NA Intergenic L1MC1|LINE|L1 -111264 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 529-195 chr6 64692428 64692646 + 3 NA intron (NM_001292009, intron 22 of 43) L1PA16|LINE|L1 -608881 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 646-113 chr7 9863831 9864160 + 3 NA Intergenic Intergenic 229725 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 328-312 chr20 21896597 21896778 + 3 NA Intergenic Intergenic -157403 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 499-240 chr7 27392577 27392896 + 3 NA Intergenic Intergenic -145507 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 482-298 chr9 102306835 102307073 + 3 NA Intergenic L1PA16|LINE|L1 -212683 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 360-15 chr1 166468458 166468608 + 3 NA Intergenic Intergenic 21506 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 616-5 chr1 103589640 103589994 + 3 NA Intergenic MER61-int|LTR|ERV1 20413 NR_024438 648740 Hs.721681 NR_024438 ACTG1P4 ACTGP4 actin gamma 1 pseudogene 4 pseudo 1030-21 chr7 4501438 4502113 + 3 NA Intergenic L1MD|LINE|L1 -180520 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 309-131 chr13 66537829 66538047 + 3 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) -287231 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 532-206 chr5 81830144 81830536 + 3 NA Intergenic LTR16|LTR|ERVL -79087 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 372-158 chr14 92065327 92065490 + 3 NA intron (NR_028454, intron 8 of 8) L1MD2|LINE|L1 -25349 NM_004239 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|ODCD|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 297-118 chr13 70877041 70877227 + 3 NA Intergenic Intergenic -138007 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 312-79 chr11 39540506 39540625 + 3 NA Intergenic L1M3b|LINE|L1 752565 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 533-17 chr10 52081568 52081826 + 3 NA intron (NM_001098512, intron 7 of 17) L2a|LINE|L2 232431 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 988-19 chr20 42382907 42383493 + 3 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -302283 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 374-234 chr22 25174636 25174793 + 3 NA intron (NM_001145206, intron 6 of 10) MIRb|SINE|MIR -25144 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 340-416 chr4 110808295 110808432 + 3 NA Intergenic MIR|SINE|MIR 52284 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 613-28 chr12 132914053 132914385 + 3 NA Intergenic L1M5|LINE|L1 26377 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 355-173 chr15 88319634 88319867 + 3 NA Intergenic Intergenic -63011 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 466-96 chr16 71335592 71335850 + 3 NA Intergenic L1PA16|LINE|L1 -22992 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 479-108 chr2 116485350 116485685 + 3 NA Intergenic L1MA4A|LINE|L1 1141702 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 638-7 chr1 115276785 115277230 + 3 NA Intergenic Intergenic -6027 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 841-25 chr3 99243272 99243671 + 3 NA Intergenic Intergenic -341776 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 484-19 chr1 195724483 195724727 + 3 NA Intergenic L1MCc|LINE|L1 364110 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 549-55 chr13 88205995 88206361 + 3 NA intron (NR_131919, intron 1 of 4) (ATAT)n|Simple_repeat|Simple_repeat 63311 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 370-284 chr21 28554363 28554606 + 3 NA Intergenic MER65-int|LTR|ERV1 15166 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 358-184 chr19 57479053 57479253 + 3 NA Intergenic MER65D|LTR|ERV1 -1587 NM_001144068 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 685-59 chr20 24862965 24863362 + 3 NA Intergenic L1MEd|LINE|L1 -86106 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 630-141 chr8 118285863 118286086 + 3 NA intron (NM_001101676, intron 4 of 4) L1PA5|LINE|L1 -174155 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 565-73 chr2 34788878 34789111 + 3 NA Intergenic L2c|LINE|L2 111437 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 387-239 chr3 190047593 190047819 + 3 NA intron (NM_001134418, intron 1 of 14) L1MA5|LINE|L1 73191 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 1569-2 chr7 62719983 62720960 + 3 NA Intergenic ALR/Alpha|Satellite|centr 583585 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 354-134 chr14 51064282 51064531 + 3 NA intron (NM_015163, intron 1 of 9) L1MEf|LINE|L1 31298 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 254-109 chr14 43927431 43927598 + 3 NA Intergenic Intergenic 579769 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 483-168 chr3 84620232 84620514 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 249202 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 597-8 chr1 106701163 106701390 + 3 NA Intergenic Intergenic -116963 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 1029-12 chr5 45996495 45997078 + 3 NA Intergenic ALR/Alpha|Satellite|centr -300406 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 481-219 chr4 62185897 62186162 + 3 NA Intergenic L1PREC2|LINE|L1 -24264 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 569-137 chr4 111156544 111156941 + 3 NA Intergenic Intergenic -296095 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 315-397 chr5 135683297 135683448 + 3 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) -29437 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 307-225 chr2 32921037 32921257 + 3 NA intron (NR_027099, intron 10 of 10) intron (NR_027099, intron 10 of 10) -5980 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 651-100 chr5 117313263 117313594 + 3 NA Intergenic Intergenic -102084 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 449-185 chr4 44376651 44376963 + 3 NA intron (NM_198353, intron 1 of 1) L2b|LINE|L2 72002 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 535-83 chr15 27302185 27302447 + 3 NA intron (NM_001270873, intron 3 of 5) L1MD2|LINE|L1 -140997 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 774-13 chr11 83234434 83234951 + 3 NA intron (NM_001300975, intron 7 of 10) intron (NM_001300975, intron 7 of 10) 40980 NM_001300973 338699 Hs.503438 NM_182603 ENSG00000137494 ANKRD42 PPP1R79|SARP ankyrin repeat domain 42 protein-coding 542-105 chr2 137488676 137489047 + 3 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 439071 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 462-142 chr2 128460800 128461106 + 3 NA Intergenic L1M4|LINE|L1 -142085 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 651-45 chr16 13705034 13705273 + 3 NA Intergenic L1MEf|LINE|L1 -215004 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 844-14 chr12 41387947 41388453 + 3 NA intron (NM_001164595, intron 3 of 9) L1PA13|LINE|L1 -49539 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 488-152 chr2 186633998 186634198 + 3 NA intron (NM_002210, intron 6 of 29) intron (NM_002210, intron 6 of 29) 33893 NM_001144999 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 514-127 chr18 57075593 57075914 + 3 NA Intergenic MIR|SINE|MIR -3634 NR_048536 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 343-33 chr1 220308517 220308691 + 3 NA Intergenic MER88|LTR|ERVL -36151 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 563-98 chr2 220235810 220236038 + 3 NA Intergenic Intergenic -329359 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 548-10 chr1 147373260 147373538 + 3 NA Intergenic L1M4|LINE|L1 130257 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 401-177 chr2 210142896 210143152 + 3 NA intron (NM_001307976, intron 2 of 13) L1ME5|LINE|L1 28385 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 430-261 chr6 62305550 62305706 + 3 NA Intergenic L1ME1|LINE|L1 -19401 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 413-150 chr2 134716819 134716996 + 3 NA intron (NM_030923, intron 1 of 7) intron (NM_030923, intron 1 of 7) 2093 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 534-217 chr6 61255879 61256099 + 3 NA Intergenic L1MC4|LINE|L1 -318141 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 1108-16 chr6 27414062 27414729 + 3 NA intron (NR_144688, intron 5 of 8) L2a|LINE|L2 25677 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 663-81 chr4 184126818 184127267 + 3 NA intron (NM_153343, intron 2 of 7) L1MEc|LINE|L1 90831 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 672-95 chr6 67048897 67049228 + 3 NA Intergenic L1MA8|LINE|L1 -1006289 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 310-488 chr7 88024462 88024651 + 3 NA intron (NM_001324421, intron 3 of 28) L1PA4|LINE|L1 90305 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 276-450 chr8 79019036 79019246 + 3 NA Intergenic AluSz6|SINE|Alu 181612 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 699-13 chr11 15308108 15308468 + 3 NA Intergenic Intergenic 159186 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 425-316 chr8 129320747 129320927 + 3 NA Intergenic MIRb|SINE|MIR -79597 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 665-71 chr4 99387910 99388322 + 3 NA Intergenic LTR84a|LTR|ERVL -35370 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 612-24 chr11 18890654 18890971 + 3 NA Intergenic LTR33|LTR|ERVL 44190 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 651-88 chr4 31487605 31487906 + 3 NA Intergenic L1MC3|LINE|L1 -18789 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 222-356 chr8 13020220 13020303 + 3 NA intron (NM_020844, intron 4 of 4) intron (NM_020844, intron 4 of 4) 7997 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 499-26 chr10 43479428 43479700 + 3 NA intron (NM_001355444, intron 3 of 3) Looper|DNA|PiggyBac 42453 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 337-52 chr10 61991488 61991693 + 3 NA intron (NM_032199, intron 3 of 9) L1MB4|LINE|L1 -57767 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 502-69 chr12 60019722 60020048 + 3 NA Intergenic L1MB5|LINE|L1 330515 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 482-304 chrX 88111405 88111642 + 3 NA Intergenic L1PA10|LINE|L1 593721 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 539-190 chr7 4491041 4491383 + 3 NA Intergenic AluSq2|SINE|Alu -191083 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 583-11 chr1 240615464 240615698 + 3 NA Intergenic Intergenic -3426 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 654-90 chr4 125616792 125617150 + 3 NA Intergenic Intergenic 109712 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 300-333 chr4 96199543 96199702 + 3 NA Intergenic Intergenic -111081 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 422-169 chr20 54770057 54770270 + 3 NA Intergenic Intergenic 294570 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 378-377 chr6 70297470 70297730 + 3 NA intron (NM_001851, intron 4 of 37) intron (NM_001851, intron 4 of 37) 5484 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 533-216 chr7 46296954 46297279 + 3 NA Intergenic L1MA9|LINE|L1 -375844 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 890-40 chr8 111178106 111178548 + 3 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) 57876 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 621-42 chr15 94797772 94798085 + 3 NA Intergenic L1MB7|LINE|L1 -57435 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 921-14 chr21 20731592 20732124 + 3 NA Intergenic HERVL40-int|LTR|ERVL 71250 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 957-14 chr20 10127481 10128028 + 3 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -91044 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 294-271 chr21 33184847 33185059 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -14717 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 519-48 chr12 47152282 47152611 + 3 NA intron (NM_001281429, intron 2 of 2) L1MC4a|LINE|L1 -35366 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 470-286 chr9 30008810 30009080 + 3 NA Intergenic OldhAT1|DNA|hAT-Ac 399509 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 610-57 chr15 58575130 58575539 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -76599 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 538-153 chr3 104235355 104235605 + 3 NA Intergenic Intergenic -711364 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 176-73 chr21 31245304 31245372 + 3 NA intron (NM_001353686, intron 6 of 27) intron (NM_001353686, intron 6 of 27) -84398 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 493-224 chr4 33337851 33338030 + 3 NA Intergenic L1PB4|LINE|L1 701953 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 408-13 chr1 77254427 77254639 + 3 NA Intergenic L1M1|LINE|L1 -27486 NM_174858 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 784-23 chr17 53479371 53479705 + 3 NA Intergenic L2|LINE|L2 -343389 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 708-19 chr12 39347853 39348215 + 3 NA intron (NM_001173464, intron 11 of 37) intron (NM_001173464, intron 11 of 37) 95086 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 476-135 chr2 52058784 52058951 + 3 NA intron (NR_135237, intron 7 of 10) MSTB-int|LTR|ERVL-MaLR -311781 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 333-31 chr1 164178683 164178877 + 3 NA Intergenic Intergenic -380580 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 367-428 chr7 105833366 105833532 + 3 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 43136 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 427-165 chr3 118195860 118196139 + 3 NA Intergenic L1M2|LINE|L1 -445769 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 547-184 chr5 66118004 66118188 + 3 NA Intergenic AluSc|SINE|Alu -26204 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 567-185 chr8 89471807 89472129 + 3 NA Intergenic Intergenic 285743 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 504-251 chr8 30929236 30929507 + 3 NA Intergenic L1M3de|LINE|L1 -16363 NM_001350162 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 567-35 chr11 79746955 79747329 + 3 NA Intergenic Intergenic -306112 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 621-59 chr2 72046727 72047076 + 3 NA Intergenic L1M5|LINE|L1 100961 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 592-183 chr9 29661023 29661329 + 3 NA Intergenic Intergenic -447575 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 201-32 chr10 76777015 76777148 + 3 NA Intergenic MIR|SINE|MIR -110963 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 849-28 chr4 30478029 30478492 + 3 NA Intergenic Intergenic -242109 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 473-68 chr12 127873198 127873485 + 3 NA Intergenic Intergenic -8276 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 690-85 chr5 115016708 115017095 + 3 NA Intergenic Intergenic 153007 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 395-96 chr14 66447992 66448210 + 3 NA Intergenic Intergenic -38270 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 452-153 chr20 19550416 19550672 + 3 NA intron (NM_020689, intron 3 of 16) (TG)n|Simple_repeat|Simple_repeat -265948 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 441-189 chr5 4900588 4900898 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 127262 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 614-71 chr21 22678001 22678361 + 3 NA Intergenic Intergenic -401103 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 417-240 chr6 72885531 72885786 + 3 NA intron (NM_001160132, intron 1 of 13) L1MEd|LINE|L1 82095 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 1082-12 chr20 52587380 52587750 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -33273 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 627-73 chr3 81170397 81170784 + 3 NA Intergenic Tigger19b|DNA|TcMar-Tigger 176722 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 573-58 chr13 48765573 48765866 + 3 NA Intergenic L1M4|LINE|L1 111790 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 388-116 chr14 88770204 88770399 + 3 NA intron (NM_183387, intron 1 of 42) L1M5|LINE|L1 22652 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 557-46 chr12 74028646 74028894 + 3 NA Intergenic Intergenic 263861 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 523-224 chr5 107235704 107235932 + 3 NA Intergenic Intergenic -224804 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 427-19 chr10 37652722 37652912 + 3 NA Intergenic L1ME4b|LINE|L1 -49886 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 597-22 chr10 81003515 81003800 + 3 NA Intergenic Intergenic 353860 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 253-50 chr10 52312806 52312982 + 3 NA intron (NR_038277, intron 2 of 5) intron (NR_038277, intron 2 of 5) 1234 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 413-324 chr9 90335564 90335772 + 3 NA intron (NR_109795, intron 2 of 2) L1MCa|LINE|L1 97821 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 633-55 chr19 53141449 53141801 + 3 NA exon (NM_001172674, exon 5 of 5) exon (NM_001172674, exon 5 of 5) -8705 NM_001352131 55786 Hs.147765 NM_018355 ENSG00000170954 ZNF415 Pact|ZfLp zinc finger protein 415 protein-coding 476-184 chr3 153368371 153368566 + 3 NA Intergenic Intergenic -116027 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 732-66 chr3 164057364 164057747 + 3 NA Intergenic L1MB3|LINE|L1 114001 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 670-104 chr6 121821329 121821775 + 3 NA Intergenic Intergenic 385906 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 364-159 chr16 71418246 71418397 + 3 NA intron (NR_146574, intron 1 of 2) intron (NR_146574, intron 1 of 2) 8143 NR_146574 105371333 Hs.578738 NR_146574 ENSG00000261348 LINC02136 - long intergenic non-protein coding RNA 2136 ncRNA 728-65 chr4 52180901 52181178 + 3 NA Intergenic L1MC3|LINE|L1 129735 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 286-277 chr3 55708596 55708770 + 3 NA intron (NR_132749, intron 14 of 17) intron (NR_132749, intron 14 of 17) -49214 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 606-97 chr20 51776186 51776425 + 3 NA Intergenic AluJb|SINE|Alu -7915 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 252-217 chr2 154002303 154002417 + 3 NA intron (NM_052917, intron 3 of 12) L1M1|LINE|L1 57966 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 534-50 chr11 100595985 100596254 + 3 NA Intergenic L2c|LINE|L2 -91169 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 752-48 chr22 25538716 25539073 + 3 NA Intergenic MIR|SINE|MIR -25781 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 503-122 chr17 16592260 16592504 + 3 NA Intergenic L1MB5|LINE|L1 -23170 NM_001346168 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 321-515 chr7 10006579 10006749 + 3 NA Intergenic Intergenic 372394 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 501-194 chr4 88298358 88298615 + 3 NA intron (NR_134237, intron 1 of 3) MER83|LTR|ERV1 13556 NR_134238 105369192 Hs.733660 NR_134236 ENSG00000246375 PPM1K-DT - PPM1K divergent transcript ncRNA 482-53 chr11 79056653 79056866 + 3 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 345350 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 426-156 chr2 229187971 229188164 + 3 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 44025 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 355-297 chr21 30566818 30567032 + 3 NA Intergenic Intergenic -5612 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 452-31 chr10 57030759 57030993 + 3 NA Intergenic Intergenic 273683 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 972-13 chr22 47798852 47799340 + 3 NA intron (NR_122046, intron 8 of 8) L1MC|LINE|L1 167422 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 355-45 chr10 41723093 41723368 + 3 NA Intergenic ALR/Alpha|Satellite|centr 644815 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 935-43 chr9 25880025 25880530 + 3 NA Intergenic L1MDb|LINE|L1 100221 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 288-376 chr6 98209594 98209730 + 3 NA Intergenic L1MEh|LINE|L1 185131 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 498-20 chr10 12879374 12879555 + 3 NA Intergenic Intergenic 122249 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 569-133 chr4 68213190 68213389 + 3 NA TTS (NR_015446) TTS (NR_015446) 4791 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 329-612 chr9 101996673 101996870 + 3 NA Intergenic Intergenic -258191 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 318-263 chr2 60050210 60050351 + 3 NA Intergenic L1ME1|LINE|L1 332756 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 510-132 chr2 21682037 21682224 + 3 NA Intergenic L1MB3|LINE|L1 28522 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 469-259 chr7 30960642 30960815 + 3 NA Intergenic L1ME3Cz|LINE|L1 -3225 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 459-117 chr18 43611812 43611997 + 3 NA Intergenic L1MEd|LINE|L1 -334414 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 607-145 chr8 113901439 113901806 + 3 NA Intergenic Intergenic -464683 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 306-13 chr1 78752978 78753147 + 3 NA Intergenic Intergenic 103231 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 486-7 chr1 86826821 86827115 + 3 NA Intergenic L2c|LINE|L2 87158 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 993-2 chr10 125954998 125955574 + 3 NA intron (NM_001363549, intron 1 of 10) L1PA11|LINE|L1 17987 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 727-51 chr22 26767911 26768320 + 3 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) -92096 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 563-101 chr20 9867363 9867582 + 3 NA Intergenic Intergenic -28396 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 185-4 chr1 92551553 92551646 + 3 NA intron (NM_001350198, intron 19 of 19) intron (NM_001350198, intron 19 of 19) -64674 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 909-26 chr7 3878604 3879073 + 3 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -250847 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 539-7 chr1 70928920 70929257 + 3 NA intron (NR_028293, intron 2 of 4) intron (NR_028293, intron 2 of 4) -117418 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 542-186 chr6 34908022 34908312 + 3 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 18912 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 467-236 chr5 157423716 157423898 + 3 NA intron (NR_136204, intron 1 of 3) Tigger2|DNA|TcMar-Tigger -36212 NM_001099287 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA like domain containing 4 protein-coding 465-82 chr14 75422263 75422613 + 3 NA Intergenic Intergenic -5286 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 769-60 chr7 30717681 30717995 + 3 NA Intergenic MIR|SINE|MIR -17735 NM_001202481 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 1334-2 chr20 52505188 52506017 + 3 NA Intergenic L1MA3|LINE|L1 -115236 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 412-56 chr11 105981164 105981471 + 3 NA non-coding (NR_046356, exon 17 of 17) non-coding (NR_046356, exon 17 of 17) 40923 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 1096-20 chr8 71786809 71787523 + 3 NA Intergenic Intergenic -55957 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 459-162 chr20 43306255 43306530 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -116486 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 422-215 chr4 91610220 91610398 + 3 NA Intergenic Intergenic 666993 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 517-60 chr12 65580881 65581126 + 3 NA intron (NR_120434, intron 3 of 4) L1PB1|LINE|L1 -21866 NR_146529 105369807 NR_146529 ENSG00000256268 LINC02454 - long intergenic non-protein coding RNA 2454 ncRNA 788-44 chr6 125110327 125110838 + 3 NA Intergenic L1M2|LINE|L1 -43191 NM_001003396 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 513-221 chr5 32488254 32488584 + 3 NA Intergenic AluSz|SINE|Alu -43679 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 433-282 chr8 89109329 89109592 + 3 NA Intergenic Intergenic 648251 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 531-41 chr11 124683249 124683554 + 3 NA intron (NM_017425, intron 3 of 4) L1MA4A|LINE|L1 -7098 NM_001199922 54414 Hs.10056 NM_018978 ENSG00000110013 SIAE AIS6|CSE-C|CSEC|LSE|YSG2 sialic acid acetylesterase protein-coding 749-85 chr7 53497305 53497690 + 3 NA Intergenic L1MB8|LINE|L1 314434 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 581-76 chr2 63549957 63550301 + 3 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) 38348 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 412-25 chr10 34480989 34481179 + 3 NA intron (NM_001184789, intron 3 of 22) AluSx1|SINE|Alu 334212 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 473-271 chr8 80776235 80776571 + 3 NA intron (NM_001033723, intron 2 of 8) L1ME4c|LINE|L1 98065 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 673-51 chr2 12654715 12655105 + 3 NA Intergenic Intergenic -61962 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 575-94 chr2 184928994 184929279 + 3 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 237936 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 815-29 chr2 170908615 170909136 + 3 NA Intergenic Intergenic -19602 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 791-55 chr5 25268490 25268983 + 3 NA intron (NR_136209, intron 1 of 3) L1PA13|LINE|L1 77783 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 542-5 chr1 63220231 63220689 + 3 NA intron (NR_038252, intron 4 of 11) L1MA5A|LINE|L1 96797 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 847-14 chr13 83387702 83388205 + 3 NA Intergenic Intergenic 494440 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 569-91 chr2 49065237 49065567 + 3 NA intron (NM_000145, intron 2 of 9) L2c|LINE|L2 5799 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 261-45 chr10 109431507 109431627 + 3 NA Intergenic L1MA9|LINE|L1 491679 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 204-242 chr5 155476800 155476945 + 3 NA Intergenic Intergenic 463117 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 533-236 chr8 125932302 125932567 + 3 NA intron (NR_038447, intron 3 of 3) L2b|LINE|L2 18763 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 373-385 chr7 70427879 70428091 + 3 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -704159 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 930-5 chr10 105040959 105041514 + 3 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -375020 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 317-142 chr14 48158394 48158560 + 3 NA Intergenic Intergenic -363463 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 512-210 chr5 25848918 25849111 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity 658061 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 873-25 chr4 35413647 35414248 + 3 NA Intergenic Intergenic 829992 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 526-235 chr8 9604828 9605038 + 3 NA intron (NM_003747, intron 2 of 26) L1MEg|LINE|L1 49021 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 854-5 chr1 97285144 97285492 + 3 NA intron (NR_046590, intron 2 of 4) intron (NR_046590, intron 2 of 4) 189395 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 605-61 chr20 1421020 1421469 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -28072 NM_001199786 2280 Hs.471933 NM_000801 ENSG00000088832 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FKBP prolyl isomerase 1A protein-coding 530-244 chr7 121809207 121809546 + 3 NA Intergenic Intergenic -63785 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 963-9 chr14 44458500 44458930 + 3 NA Intergenic L1M2|LINE|L1 48568 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1179 chr2 32905708 32906361 + 3 NA intron (NR_027099, intron 10 of 10) L1M4|LINE|L1 -21093 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 848-41 chr6 169140600 169141088 + 3 NA Intergenic Intergenic 21457 NR_132622 101929484 Hs.364166 NR_132622 ENSG00000223485 LINC01615 - long intergenic non-protein coding RNA 1615 ncRNA 553-246 chr9 19437995 19438221 + 3 NA intron (NM_001010887, intron 4 of 5) MIRb|SINE|MIR 29099 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 696-38 chr14 49074565 49074946 + 3 NA Intergenic L1P3|LINE|L1 511625 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 580-43 chr13 39452412 39452786 + 3 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 150594 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 646-31 chr12 118892807 118893180 + 3 NA Intergenic L1PA15|LINE|L1 -59457 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 342-162 chr15 60145060 60145203 + 3 NA Intergenic L1MEg|LINE|L1 140820 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 320-170 chr15 61394364 61394525 + 3 NA Intergenic Intergenic -165142 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 372-397 chr5 43890835 43891023 + 3 NA Intergenic Intergenic -287699 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 707-7 chr1 218672716 218673210 + 3 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 162868 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 724-14 chr12 131099908 131100497 + 3 NA intron (NM_198827, intron 15 of 24) intron (NM_198827, intron 15 of 24) -64809 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 477-50 chr11 15369610 15369909 + 3 NA Intergenic Intergenic 220657 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 372-177 chr16 63179663 63179855 + 3 NA Intergenic Intergenic -1143321 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 449-175 chr3 120039349 120039600 + 3 NA intron (NM_002093, intron 1 of 11) LTR10G|LTR|ERV1 45174 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 1131-9 chr5 88829973 88830700 + 3 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) -3148 NM_001364342 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 446-84 chr12 94350245 94350428 + 3 NA intron (NR_160431, intron 7 of 12) L1M3|LINE|L1 87815 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 579-111 chr4 44643981 44644235 + 3 NA intron (NM_182592, intron 2 of 5) MSTA-int|LTR|ERVL-MaLR 7533 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 376-381 chr7 77357969 77358230 + 3 NA intron (NR_146937, intron 14 of 31) AluSz6|SINE|Alu -57099 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 443-220 chr4 52171868 52172082 + 3 NA Intergenic Intergenic 120671 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 716-58 chr4 174094543 174095082 + 3 NA non-coding (NR_125896, exon 5 of 5) non-coding (NR_125896, exon 5 of 5) 125586 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 643-69 chr22 49051089 49051499 + 3 NA Intergenic AluSx1|SINE|Alu 184524 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 622-99 chr4 129076790 129077197 + 3 NA intron (NM_001300898, intron 2 of 5) intron (NM_001300898, intron 2 of 5) 16546 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 384-290 chr5 39899722 39899904 + 3 NA Intergenic Intergenic -152478 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 742-20 chr12 104778957 104779449 + 3 NA Intergenic HAL1|LINE|L1 179087 NM_001352171 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 243-155 chr16 68814568 68814734 + 3 NA intron (NM_001317185, intron 9 of 15) intron (NM_001317185, intron 9 of 15) -28880 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 518-223 chr5 9021643 9021993 + 3 NA Intergenic L1PA16|LINE|L1 32077 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 577-198 chr8 143413034 143413273 + 3 NA Intergenic Intergenic -4526 NR_126358 104326051 Hs.202140 NR_126358 ENSG00000254338 MAFA-AS1 TCONS_00014882 MAFA antisense RNA 1 ncRNA 368-431 chr7 91317645 91317770 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR 53274 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 622-153 chr9 96757104 96757501 + 3 NA 3' UTR (NM_014930, exon 6 of 6) 3' UTR (NM_014930, exon 6 of 6) 20785 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 320-239 chr19 37543078 37543279 + 3 NA 3' UTR (NM_001013659, exon 8 of 8) 3' UTR (NM_001013659, exon 8 of 8) -5771 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 602-53 chr2 23782730 23782975 + 3 NA intron (NR_125717, intron 23 of 28) intron (NR_125717, intron 23 of 28) 144271 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 1079-4 chr18 6089266 6089744 + 3 NA intron (NM_001365766, intron 15 of 16) intron (NM_001365766, intron 15 of 16) -167239 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 875-39 chrX 7739999 7740366 + 3 NA Intergenic Intergenic -102080 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 519-34 chr11 74661235 74661516 + 3 NA Intergenic L1M1|LINE|L1 49992 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 226-70 chr12 32813215 32813339 + 3 NA intron (NM_001005242, intron 9 of 12) intron (NM_001005242, intron 9 of 12) -57380 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 520-36 chr10 68484012 68484227 + 3 NA intron (NM_001324312, intron 8 of 8) intron (NM_001324312, intron 8 of 8) -11998 NR_102264 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 508-263 chrX 41543663 41543875 + 3 NA intron (NM_003688, intron 21 of 26) intron (NM_003688, intron 21 of 26) 96309 NM_022567 60506 Hs.302019 NM_022567 ENSG00000188937 NYX CLRP|CSNB1|CSNB1A|CSNB4|NBM1 nyctalopin protein-coding 524-105 chr2 2404662 2404880 + 3 NA Intergenic Intergenic -73496 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 579-98 chr3 34035708 34035995 + 3 NA Intergenic Intergenic 237221 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 464-30 chr11 4936571 4936805 + 3 NA Intergenic Intergenic 10412 NM_001005329 401666 Hs.555481 NM_001005329 ENSG00000205497 OR51A4 - olfactory receptor family 51 subfamily A member 4 protein-coding 337-213 chr17 82250188 82250381 + 3 NA intron (NM_001363749, intron 6 of 8) MER58A|DNA|hAT-Charlie 13616 NR_106845 102465472 NR_106845 ENSG00000284574 MIR6787 hsa-mir-6787 microRNA 6787 ncRNA 762-67 chr8 28043156 28043589 + 3 NA intron (NM_001010906, intron 12 of 18) intron (NM_001010906, intron 12 of 18) 40564 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 1073-6 chr16 53751959 53752612 + 3 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 48129 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 676-54 chr2 31819689 31820130 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -15929 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 436-277 chr7 17204644 17204815 + 3 NA Intergenic Intergenic -93923 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 332-511 chr8 24171295 24171462 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -122662 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 830-39 chr4 56626177 56626542 + 3 NA Intergenic LTR8A|LTR|ERV1 30163 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 288-225 chr20 31284348 31284485 + 3 NA Intergenic L1M2|LINE|L1 24169 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 775-27 chr14 71291528 71291965 + 3 NA Intergenic AluJb|SINE|Alu -28730 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 241-334 chr6 65516642 65516726 + 3 NA intron (NM_001292009, intron 2 of 43) MIRb|SINE|MIR 63120 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 464-263 chr8 135160684 135160867 + 3 NA Intergenic Intergenic -73356 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 481-303 chr8 131893025 131893223 + 3 NA Intergenic L2a|LINE|L2 -10969 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 521-197 chr5 67988227 67988572 + 3 NA Intergenic L1MC2|LINE|L1 195186 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 415-266 chr7 138379418 138379624 + 3 NA Intergenic Intergenic -80738 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 409-241 chr5 21034970 21035176 + 3 NA Intergenic L1M5|LINE|L1 -419538 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 521-123 chr2 114166760 114167152 + 3 NA Intergenic Intergenic -186972 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 479-221 chr6 131245758 131246050 + 3 NA intron (NM_016377, intron 7 of 7) intron (NM_016377, intron 7 of 7) -4500 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 425-230 chr5 45903212 45903404 + 3 NA Intergenic (TTTCTTG)n|Simple_repeat|Simple_repeat -206928 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 457-40 chr11 111032154 111032331 + 3 NA Intergenic L1PB3|LINE|L1 65076 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 402-315 chr7 31947266 31947452 + 3 NA intron (NM_001322059, intron 3 of 17) MLT2D|LTR|ERVL 123048 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 872-9 chr10 56749893 56750455 + 3 NA Intergenic Tigger4b|DNA|TcMar-Tigger -388901 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 363-133 chr14 46331746 46331916 + 3 NA intron (NR_102702, intron 3 of 3) L2|LINE|L2 -139528 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 206-145 chr21 16316842 16316919 + 3 NA intron (NR_027790, intron 4 of 7) MIRc|SINE|MIR -32112 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 281-322 chr4 81079371 81079477 + 3 NA Intergenic L1P4|LINE|L1 48716 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 433-190 chr4 25063320 25063547 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -32487 NM_018176 55203 Hs.12488 NM_018176 ENSG00000153012 LGI2 LGIL2 leucine rich repeat LGI family member 2 protein-coding 447-264 chr8 79018250 79018533 + 3 NA Intergenic Intergenic 180862 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 632-42 chr18 13943487 13943831 + 3 NA Intergenic L1MB3|LINE|L1 -27952 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 382-326 chr5 58240565 58240777 + 3 NA Intergenic Intergenic -118330 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 617-24 chr12 55628941 55629260 + 3 NA Intergenic LTR67B|LTR|ERVL -7792 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 467-47 chr11 63491686 63491862 + 3 NA promoter-TSS (NM_001146728) promoter-TSS (NM_001146728) -607 NM_054108 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 399-261 chr5 167003911 167004080 + 3 NA Intergenic Tigger19a|DNA|TcMar-Tigger -69247 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 279-203 chr2 181320200 181320374 + 3 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) -14635 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 850-39 chr5 156301108 156301497 + 3 NA Intergenic L1MA3|LINE|L1 -25455 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 815-40 chr8 70212906 70213433 + 3 NA intron (NM_001321711, intron 4 of 21) intron (NM_001321711, intron 4 of 21) -141917 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 619-117 chr7 9483459 9483751 + 3 NA Intergenic L1MB7|LINE|L1 -150665 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 761-56 chr5 87880842 87881382 + 3 NA Intergenic Intergenic 219070 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 721-16 chr14 47313941 47314333 + 3 NA intron (NM_001113498, intron 1 of 16) MIR|SINE|MIR 29109 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 403-191 chr3 6209699 6209883 + 3 NA Intergenic Intergenic 595658 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 463-74 chr12 133167027 133167197 + 3 NA Intergenic AluJb|SINE|Alu -14383 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 457-249 chr8 31503106 31503300 + 3 NA Intergenic L1MA1|LINE|L1 -136549 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 629-18 chr10 31947532 31947897 + 3 NA Intergenic Intergenic -18838 NM_001270697 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 517-148 chr2 185818221 185818482 + 3 NA intron (NM_173651, intron 19 of 22) L1MB3|LINE|L1 -18200 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 411-295 chr8 129659415 129659624 + 3 NA intron (NR_130917, intron 1 of 3) L1ME4a|LINE|L1 20720 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 196-118 chr2 34323444 34323573 + 3 NA Intergenic Intergenic 256282 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 365-426 chr9 82665164 82665334 + 3 NA Intergenic Intergenic 397893 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 699-29 chr14 78421910 78422289 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 18380 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 400-190 chr20 14018122 14018379 + 3 NA intron (NM_001351663, intron 2 of 17) L1MB4|LINE|L1 22734 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 449-178 chr3 178665161 178665475 + 3 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 106468 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 497-85 chr16 5416473 5416719 + 3 NA Intergenic L1MEf|LINE|L1 199654 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 855-50 chr8 88351443 88352068 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -24272 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 634-87 chr20 20436423 20436874 + 3 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 68544 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 398-63 chr11 106669999 106670194 + 3 NA Intergenic Intergenic 348380 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 592-22 chr11 10062506 10062725 + 3 NA intron (NM_030962, intron 2 of 39) L1PA14|LINE|L1 223473 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 678-89 chr5 79073923 79074355 + 3 NA intron (NM_001178005, intron 1 of 6) LTR67B|LTR|ERVL 4372 NM_001178005 23743 Hs.114172 NM_017614 ENSG00000132840 BHMT2 - betaine--homocysteine S-methyltransferase 2 protein-coding 420-136 chr2 67339823 67339993 + 3 NA Intergenic Intergenic -57425 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 695-49 chr2 98968900 98969308 + 3 NA Intergenic L1MA4|LINE|L1 -32879 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 425-246 chr5 161409221 161409435 + 3 NA intron (NM_000813, intron 6 of 9) MIRb|SINE|MIR 138796 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 310-140 chr14 64430925 64431047 + 3 NA intron (NM_005956, intron 13 of 27) intron (NM_005956, intron 13 of 27) -34513 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 876-10 chr12 12567015 12567484 + 3 NA Intergenic Intergenic -4386 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 505-146 chr2 74300188 74300454 + 3 NA intron (NM_133478, intron 7 of 30) L1MA9|LINE|L1 14704 NM_021196 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 492-147 chr20 1281116 1281337 + 3 NA intron (NM_014723, intron 2 of 5) L2|LINE|L2 14932 NM_014723 9751 Hs.323833 NM_014723 ENSG00000101298 SNPH - syntaphilin protein-coding 349-135 chr12 87628434 87628678 + 3 NA Intergenic Intergenic -140256 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 462-200 chr4 45757026 45757264 + 3 NA Intergenic Intergenic 366909 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 676-117 chr9 35494728 35495120 + 3 NA intron (NM_001330740, intron 1 of 10) (TA)n|Simple_repeat|Simple_repeat 4813 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 565-187 chr9 24647111 24647395 + 3 NA Intergenic L1MA9|LINE|L1 -101356 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 783-5 chr1 232362318 232362784 + 3 NA Intergenic MER117|DNA|hAT-Charlie 153057 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 835-26 chr2 23224447 23224835 + 3 NA Intergenic Intergenic -160538 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 907-30 chr9 24105134 24105552 + 3 NA Intergenic Intergenic -254742 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 617-60 chr2 16160598 16160929 + 3 NA Intergenic Intergenic 110336 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 592-76 chr2 13812284 13812561 + 3 NA Intergenic Intergenic 588536 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 401-264 chr5 100967543 100967715 + 3 NA Intergenic Intergenic -64347 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 496-162 chr20 45120457 45120638 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 3918 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 429-285 chr7 132733182 132733412 + 3 NA Intergenic L1ME3C|LINE|L1 -25673 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 1191 chr1 189272410 189272914 + 3 NA Intergenic L2|LINE|L2 1203348 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 545-222 chr7 34379352 34379686 + 3 NA intron (NR_033665, intron 3 of 3) MER57A-int|LTR|ERV1 -278699 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 374-125 chr16 47924509 47924745 + 3 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -37497 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LINC02192 - long intergenic non-protein coding RNA 2192 ncRNA 650-122 chr8 3878479 3878796 + 3 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1116277 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 382-153 chr18 13202397 13202606 + 3 NA Intergenic L1ME3Cz|LINE|L1 -16259 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 331-284 chr2 132977630 132977846 + 3 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 62181 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 484-72 chr15 23541791 23541994 + 3 NA Intergenic MER21C|LTR|ERVL 20239 NR_039731 100616275 NR_039731 ENSG00000265673 MIR4508 mir-4508 microRNA 4508 ncRNA 273-294 chr3 80801543 80801664 + 3 NA Intergenic L1MA4A|LINE|L1 30899 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 332-350 chr3 140168922 140169151 + 3 NA intron (NM_022131, intron 1 of 16) L1ME1|LINE|L1 233851 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 567-183 chr8 79202295 79202701 + 3 NA Intergenic Intergenic -129690 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 364-467 chr9 27521757 27521939 + 3 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -2466 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 697-37 chr16 88289527 88289974 + 3 NA Intergenic Intergenic 95469 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LINC02182 LA16c-444G7.2 long intergenic non-protein coding RNA 2182 ncRNA 466-159 chr21 16485978 16486234 + 3 NA intron (NR_136550, intron 1 of 3) L1M1|LINE|L1 -49466 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 620-134 chr7 114088639 114088870 + 3 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 2427 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 760-47 chr3 68561801 68562154 + 3 NA Intergenic Intergenic 61340 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 282-349 chr4 104348374 104348566 + 3 NA Intergenic LTR85b|LTR|Gypsy? -142495 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 601-115 chr4 178492777 178493191 + 3 NA Intergenic L1MA6|LINE|L1 -585048 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 376-71 chr11 56948753 56949018 + 3 NA Intergenic Intergenic -40029 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 1428-2 chr5 37932583 37933541 + 3 NA Intergenic Intergenic -15429 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 576-153 chr6 132834657 132835022 + 3 NA Intergenic L2a|LINE|L2 17620 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 547-219 chr7 46773572 46773850 + 3 NA Intergenic Intergenic -76589 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 267-70 chr11 99244465 99244602 + 3 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 223584 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 1165-3 chr10 95115895 95116679 + 3 NA Intergenic L1MA1|LINE|L1 -46790 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 560-182 chr8 70876749 70877060 + 3 NA Intergenic Intergenic 207565 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 475-228 chr5 77926248 77926543 + 3 NA intron (NR_105012, intron 1 of 1) AluJo|SINE|Alu -31852 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 281-168 chr17 74093300 74093480 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -110288 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 229-226 chr20 42467718 42467807 + 3 NA intron (NM_133170, intron 8 of 31) L1ME2z|LINE|L1 -217721 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 266-166 chr2 6644704 6644875 + 3 NA Intergenic L1MC1|LINE|L1 -5584 NR_106986 102466235 NR_106986 ENSG00000283394 MIR7515 hsa-mir-7515 microRNA 7515 ncRNA 804-13 chr12 4822177 4822495 + 3 NA intron (NM_002235, intron 1 of 1) intron (NM_002235, intron 1 of 1) 13160 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 300-116 chr14 72763155 72763320 + 3 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 129412 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 570-156 chr5 57528619 57528881 + 3 NA Intergenic Intergenic -41592 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 1156-8 chr4 113423793 113424480 + 3 NA Intergenic L1MB7|LINE|L1 131297 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 522-263 chr8 138125234 138125449 + 3 NA Intergenic Intergenic -41796 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 429-330 chrX 138838842 138839084 + 3 NA intron (NM_001139498, intron 2 of 5) MSTD|LTR|ERVL-MaLR 28592 NM_001139502 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 412-153 chr2 50892567 50892846 + 3 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 139426 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 455-210 chr5 19231554 19231782 + 3 NA Intergenic Intergenic 654604 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 426-164 chr20 61237348 61237514 + 3 NA Intergenic Intergenic -14830 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 224-319 chr8 63433159 63433286 + 3 NA Intergenic LTR81B|LTR|Gypsy -32627 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 366-204 chr2 82425586 82425722 + 3 NA Intergenic Intergenic -431149 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 539-72 chr14 80321345 80321579 + 3 NA intron (NR_038355, intron 2 of 8) MER5A|DNA|hAT-Charlie -90405 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 325-310 chr20 41854317 41854545 + 3 NA Intergenic L1MA5A|LINE|L1 -236054 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 512-62 chr12 33209290 33209612 + 3 NA Intergenic Intergenic 230368 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 455-238 chr6 55004742 55004960 + 3 NA Intergenic Intergenic -101609 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 397-131 chr19 15041443 15041690 + 3 NA Intergenic MER81|DNA|hAT-Blackjack -7914 NM_012114 23581 Hs.466057 NM_012114 ENSG00000105141 CASP14 ARCI12 caspase 14 protein-coding 498-103 chr17 5091895 5092156 + 3 NA exon (NM_153018, exon 2 of 2) exon (NM_153018, exon 2 of 2) 13558 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 502-278 chr8 132750099 132750364 + 3 NA intron (NM_001364885, intron 4 of 9) L2b|LINE|L2 10351 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 336-511 chr7 35653237 35653388 + 3 NA intron (NM_022373, intron 5 of 8) L1MA4A|LINE|L1 41823 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 511-174 chr3 88911721 88911957 + 3 NA Intergenic Intergenic -195782 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 407-18 chr1 209229556 209229728 + 3 NA Intergenic Intergenic -95814 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 420-69 chr12 110769965 110770202 + 3 NA Intergenic Intergenic -27192 NM_002710 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 551-148 chr5 25015967 25016192 + 3 NA Intergenic PRIMA4-int|LTR|ERV1 174577 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 567-187 chr8 92328308 92328787 + 3 NA Intergenic L1MA9|LINE|L1 -225162 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 356-157 chr14 85427997 85428200 + 3 NA Intergenic Intergenic 34183 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 609-140 chr8 122522132 122522426 + 3 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 46365 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 564-185 chr7 37828246 37828619 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -20165 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 587-157 chr7 127021898 127022316 + 3 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) 36077 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 905-34 chr9 102892061 102892469 + 3 NA Intergenic Intergenic -103068 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 744-8 chr10 9542152 9542644 + 3 NA Intergenic MER65-int|LTR|ERV1 -246805 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 381-188 chr2 48345671 48345868 + 3 NA intron (NM_002158, intron 2 of 6) intron (NM_002158, intron 2 of 6) 31087 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 678-38 chr17 39714654 39715133 + 3 NA intron (NM_001005862, intron 12 of 29) AluSc|SINE|Alu -11602 NR_039881 100616132 NR_039881 ENSG00000265178 MIR4728 - microRNA 4728 ncRNA 622-119 chr6 110471459 110471794 + 3 NA intron (NM_033125, intron 1 of 7) intron (NM_033125, intron 1 of 7) 4987 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 516-257 chr8 126120602 126120897 + 3 NA Intergenic Tigger7|DNA|TcMar-Tigger -169552 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 898-20 chr19 39283967 39284435 + 3 NA Intergenic L1MD2|LINE|L1 -12206 NM_172140 282618 Hs.406745 NM_172140 ENSG00000182393 IFNL1 IL-29|IL29 interferon lambda 1 protein-coding 889-5 chr11 60674106 60674830 + 3 NA intron (NR_026946, intron 6 of 6) intron (NR_026946, intron 6 of 6) -25144 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 358-206 chr2 66259474 66259702 + 3 NA Intergenic L1MD2|LINE|L1 98740 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 557-222 chrX 31542215 31542473 + 3 NA intron (NM_000109, intron 55 of 78) intron (NM_000109, intron 55 of 78) -34046 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 439-143 chr2 133352292 133352613 + 3 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 86257 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 1168-2 chr2 239344395 239345138 + 3 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) 7038 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 766-74 chr9 13886549 13887116 + 3 NA Intergenic L1M4c|LINE|L1 -41139 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 378-351 chr5 147983836 147983994 + 3 NA Intergenic L2b|LINE|L2 -77377 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 944-12 chr19 44254332 44254861 + 3 NA Intergenic L1M4|LINE|L1 -5284 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 384-280 chr5 9821462 9821753 + 3 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -32770 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 544-63 chr14 37956974 37957318 + 3 NA Intergenic Intergenic -55022 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 547-59 chr13 93020485 93020722 + 3 NA Intergenic AluJr|SINE|Alu -24738 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 287-2 chr1 7095896 7095993 + 3 NA intron (NM_001349608, intron 3 of 21) intron (NM_001349608, intron 3 of 21) 293810 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 182-52 chr14 56701816 56701897 + 3 NA Intergenic L1MD1|LINE|L1 103811 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 449-263 chr7 141512864 141513185 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -38386 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 516-76 chr14 97129616 97129822 + 3 NA Intergenic Intergenic -25138 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 448-282 chr8 77057740 77058004 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -56828 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 367-356 chr5 57977815 57978001 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -78746 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 485-271 chr7 97784482 97784747 + 3 NA Intergenic Intergenic 52528 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 543-113 chr2 24212148 24212428 + 3 NA intron (NM_001348182, intron 32 of 38) intron (NM_001348182, intron 32 of 38) 37235 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 476-38 chr10 111617902 111618076 + 3 NA Intergenic Intergenic 503698 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 758-25 chr14 55879582 55879994 + 3 NA Intergenic Intergenic -83114 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 538-235 chr8 99974678 99974889 + 3 NA intron (NM_015668, intron 23 of 27) AluSx1|SINE|Alu -29799 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 630-113 chr5 158149171 158149519 + 3 NA Intergenic L2a|LINE|L2 260428 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 844-61 chr7 3327983 3328356 + 3 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 26917 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 196-105 chr19 33709532 33709643 + 3 NA intron (NM_001127895, intron 3 of 4) L1MB7|LINE|L1 25059 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 627-52 chr2 52857404 52857802 + 3 NA Intergenic Intergenic -154988 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 635-78 chr4 56572037 56572351 + 3 NA intron (NM_001256475, intron 4 of 8) Tigger3b|DNA|TcMar-Tigger 41588 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 953-13 chr2 21942072 21942710 + 3 NA Intergenic Intergenic -231739 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 466-274 chr8 119691467 119691646 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -18166 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 522-114 chr18 68372237 68372641 + 3 NA Intergenic Intergenic 342669 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 536-25 chr1 227937781 227938066 + 3 NA intron (NM_003395, intron 1 of 3) intron (NM_003395, intron 1 of 3) 3760 NR_049806 100847072 NR_049806 ENSG00000264483 MIR5008 - microRNA 5008 ncRNA 402-110 chr17 33166238 33166395 + 3 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR 126672 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 379-344 chr8 91428801 91429050 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 179606 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 422-86 chr14 68480762 68481002 + 3 NA intron (NM_001321818, intron 10 of 10) MER34B-int|LTR|ERV1 147905 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 408-132 chr16 72742308 72742519 + 3 NA Intergenic Intergenic -77443 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 756-57 chr8 84299008 84299505 + 3 NA intron (NM_001354320, intron 2 of 9) L1PA15|LINE|L1 114590 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 960 chr1 166586619 166587076 + 3 NA Intergenic Intergenic -17069 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 589-114 chr4 91130117 91130542 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 895298 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 513-60 chr12 77961702 77961973 + 3 NA intron (NM_001024383, intron 3 of 39) intron (NM_001024383, intron 3 of 39) 130943 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 347-450 chr7 1408752 1408978 + 3 NA Intergenic MER74A|LTR|ERVL 50605 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 699-90 chr6 40081116 40081670 + 3 NA Intergenic Intergenic -146931 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 651-82 chr3 29231283 29231560 + 3 NA Intergenic AluSx|SINE|Alu 49518 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 530-234 chr7 62936182 62936572 + 3 NA Intergenic ALR/Alpha|Satellite|centr 367679 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 318-128 chr12 9071794 9071985 + 3 NA intron (NM_000014, intron 31 of 35) intron (NM_000014, intron 31 of 35) 6712 NR_137425 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 797-48 chr6 155769796 155770074 + 3 NA Intergenic L1MA5A|LINE|L1 -176862 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 382-406 chr8 82436731 82436926 + 3 NA Intergenic L1ME3F|LINE|L1 -475276 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 492-97 chr15 35297629 35297871 + 3 NA Intergenic L2a|LINE|L2 60424 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 448-179 chr4 52437618 52437916 + 3 NA Intergenic Intergenic 218772 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 410-162 chr20 20219399 20219578 + 3 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) -148616 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 880-54 chrX 96654576 96655090 + 3 NA Intergenic L1MC5a|LINE|L1 -29830 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 753-23 chr15 27061170 27061568 + 3 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 90188 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 278-279 chr3 86262637 86262830 + 3 NA Intergenic L1MEd|LINE|L1 -219210 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 490-33 chr1 241269754 241270083 + 3 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 85908 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 322-435 chr5 85771866 85772052 + 3 NA Intergenic Intergenic -510485 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 450-251 chr5 148059279 148059508 + 3 NA Intergenic Intergenic -4579 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 415-94 chr17 39047619 39047843 + 3 NA intron (NR_033753, intron 4 of 4) intron (NR_033753, intron 4 of 4) -9288 NR_036551 100131347 Hs.676510 NR_036551 ENSG00000263818 RDM1P5 - RDM1 pseudogene 5 pseudo 657-37 chr17 33601058 33601390 + 3 NA intron (NM_001094, intron 1 of 9) MSTD-int|LTR|ERVL-MaLR -67464 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 685-67 chr3 106767650 106768072 + 3 NA Intergenic MIRb|SINE|MIR 472777 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 908-3 chr10 75884404 75884839 + 3 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 101860 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 872-4 chr1 119462174 119462762 + 3 NA Intergenic Intergenic -44735 NM_001328615 3283 Hs.364941 NM_000862 ENSG00000203857 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 377-143 chr16 8294345 8294501 + 3 NA Intergenic MIRb|SINE|MIR 295415 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 791-31 chr17 69837557 69838043 + 3 NA intron (NR_109972, intron 3 of 4) L1MA8|LINE|L1 -123907 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 507-148 chr20 40618312 40618564 + 3 NA Intergenic Ricksha_b|DNA|MULE-MuDR 70798 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 869 chr1 7117571 7117976 + 3 NA intron (NM_001349608, intron 3 of 21) intron (NM_001349608, intron 3 of 21) 271981 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 995-18 chr5 30006272 30006935 + 3 NA Intergenic Intergenic 126043 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 437-153 chr2 214982087 214982293 + 3 NA exon (NM_173076, exon 30 of 53) exon (NM_173076, exon 30 of 53) 49896 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 416-55 chr10 106058394 106058545 + 3 NA Intergenic MIRb|SINE|MIR -81696 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 424-237 chr6 23898345 23898554 + 3 NA Intergenic L1MC3|LINE|L1 -227766 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 783-81 chr9 93776755 93777150 + 3 NA Intergenic Intergenic -42405 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 346-177 chr16 53211716 53211859 + 3 NA intron (NM_001352157, intron 2 of 37) intron (NM_001352157, intron 2 of 37) 3336 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 460-264 chr6 155897365 155897687 + 3 NA Intergenic Intergenic -49271 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 423-145 chr2 189940526 189940712 + 3 NA Intergenic L1M3f|LINE|L1 122110 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 575-10 chr1 147335889 147336306 + 3 NA Intergenic Intergenic 92955 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 496-119 chr18 54873053 54873251 + 3 NA intron (NM_004163, intron 1 of 5) intron (NM_004163, intron 1 of 5) 44675 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 648-152 chr9 103942624 103942961 + 3 NA Intergenic Intergenic -56917 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 717-38 chr2 8903441 8903966 + 3 NA intron (NR_135606, intron 4 of 12) L1M5|LINE|L1 -66090 NM_001348738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 538-156 chr3 118030527 118030872 + 3 NA Intergenic L1MEf|LINE|L1 -339774 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 1016-15 chr3 147881302 147881860 + 3 NA Intergenic MER52-int|LTR|ERV1 -196578 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 377-177 chr19 1716291 1716546 + 3 NA Intergenic Intergenic -37088 NM_001080488 390874 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 335-253 chr2 104083965 104084145 + 3 NA Intergenic L1MC1|LINE|L1 324277 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 575-182 chr7 22216518 22216835 + 3 NA intron (NM_012294, intron 9 of 25) intron (NM_012294, intron 9 of 25) -21866 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 538-104 chr2 11912635 11912826 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -75744 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 358-182 chr19 43850130 43850368 + 3 NA 3' UTR (NM_181845, exon 7 of 7) 3' UTR (NM_181845, exon 7 of 7) 22928 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 571-101 chr3 13128131 13128374 + 3 NA Intergenic L1ME1|LINE|L1 -54823 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 642-49 chr19 28391386 28391717 + 3 NA Intergenic Intergenic -215137 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 330-353 chr3 100505692 100505895 + 3 NA intron (NM_018004, intron 1 of 5) L1MEc|LINE|L1 13174 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 998-12 chr2 134052464 134053028 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -67189 NM_001371457 565-45 chr15 51238234 51238465 + 3 NA intron (NM_001347252, intron 2 of 9) intron (NM_001347252, intron 2 of 9) -3841 NR_039863 100616369 NR_039863 ENSG00000266593 MIR4713 - microRNA 4713 ncRNA 448-95 chr16 78915497 78915738 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 685120 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 645-8 chr10 31682454 31682836 + 3 NA Intergenic L1M4|LINE|L1 226281 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 735-86 chr9 26816815 26817105 + 3 NA Intergenic L1MB7|LINE|L1 75842 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 508-217 chr7 4500803 4501048 + 3 NA Intergenic Intergenic -181370 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 798-21 chr16 87190905 87191330 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -20998 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 594-50 chr15 99582564 99582904 + 3 NA intron (NM_001352616, intron 1 of 10) intron (NM_001352616, intron 1 of 10) 16251 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 530-15 chr1 196437939 196438166 + 3 NA intron (NM_001287820, intron 8 of 26) MIRb|SINE|MIR 144429 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 592-79 chr2 31896808 31897026 + 3 NA intron (NM_001137602, intron 4 of 7) L1PA7|LINE|L1 -92937 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 825-32 chr3 114226281 114226843 + 3 NA Intergenic Intergenic 11016 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 527-104 chr16 54355800 54356104 + 3 NA Intergenic L1MEd|LINE|L1 14506 NR_134922 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 573-179 chr7 23831062 23831301 + 3 NA intron (NM_031414, intron 23 of 23) L1M2|LINE|L1 120962 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 283-164 chr16 62629910 62630015 + 3 NA Intergenic L1MC2|LINE|L1 -593524 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 611-16 chr10 82429665 82430124 + 3 NA intron (NR_163253, intron 3 of 10) L1M4|LINE|L1 -196974 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 476-107 chr17 12827932 12828210 + 3 NA intron (NM_001321164, intron 1 of 20) intron (NM_001321164, intron 1 of 20) -37787 NR_104607 100128006 Hs.567641 NR_104607 ENSG00000265489 LOC100128006 - uncharacterized LOC100128006 ncRNA 381-122 chr16 25918880 25919023 + 3 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -106286 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 466-174 chr3 106266638 106266865 + 3 NA Intergenic Intergenic -397350 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 636-53 chr15 60209045 60209281 + 3 NA Intergenic Intergenic 188823 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 1290-3 chr3 112908427 112909268 + 3 NA Intergenic Intergenic -62897 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 401-110 chr15 93304270 93304493 + 3 NA Intergenic L1MA4A|LINE|L1 98315 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 226-60 chr11 106264447 106264572 + 3 NA non-coding (NR_120551, exon 5 of 5) non-coding (NR_120551, exon 5 of 5) 13102 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 248-423 chr9 22714614 22714797 + 3 NA intron (NR_038977, intron 3 of 5) L1MB5|LINE|L1 68505 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 495-15 chr1 208571651 208571840 + 3 NA Intergenic Intergenic -156943 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 332-239 chr2 13173214 13173389 + 3 NA Intergenic L1ME2|LINE|L1 -166288 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 911-22 chr6 40042341 40042860 + 3 NA Intergenic Intergenic -108138 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 445-268 chr8 58921769 58921992 + 3 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) 197267 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 423-250 chr6 142477614 142477868 + 3 NA Intergenic L1MCc|LINE|L1 160095 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 678-76 chr4 76424384 76424702 + 3 NA Intergenic L2a|LINE|L2 -10686 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 513-283 chr8 90964609 90964904 + 3 NA intron (NM_001363275, intron 4 of 5) L1MB5|LINE|L1 20321 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 577-90 chr2 52325811 52326188 + 3 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -44649 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 681-20 chr14 71999941 72000276 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 66581 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 365-286 chr4 39928874 39929027 + 3 NA intron (NM_001100399, intron 2 of 32) intron (NM_001100399, intron 2 of 32) 48961 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 241-150 chr18 2232125 2232239 + 3 NA Intergenic L1ME3A|LINE|L1 339323 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 548-49 chr12 29144124 29144460 + 3 NA Intergenic LTR25-int|LTR|ERV1 -4986 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 288-310 chr4 137363819 137363940 + 3 NA Intergenic L1MCa|LINE|L1 -151080 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 262-192 chr2 16267814 16267963 + 3 NA Intergenic Intergenic 217461 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 1220-8 chr5 45147595 45148274 + 3 NA Intergenic L1MC3|LINE|L1 338987 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 258-181 chr2 29931777 29931962 + 3 NA Intergenic Charlie1|DNA|hAT-Charlie -10283 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 601-104 chr4 37205105 37205385 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 36746 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 489-27 chr10 44215425 44215607 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -77234 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 764-19 chr12 50292212 50292755 + 3 NA Intergenic L1MA3|LINE|L1 -8963 NM_016357 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 498-27 chr10 43751682 43751947 + 3 NA Intergenic Intergenic 27011 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 685-52 chr2 155737947 155738373 + 3 NA Intergenic Intergenic 516771 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 647-30 chr15 36149556 36149977 + 3 NA Intergenic L1MB3|LINE|L1 222910 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 777-68 chr8 86104459 86104765 + 3 NA intron (NM_152565, intron 1 of 7) L1ME4b|LINE|L1 5702 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 736-12 chr10 31246817 31247148 + 3 NA intron (NR_134478, intron 1 of 2) L1PA16|LINE|L1 59099 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 256-220 chr2 160547315 160547443 + 3 NA Intergenic L1MC1|LINE|L1 -53572 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 909-7 chr13 74004100 74004620 + 3 NA intron (NM_007249, intron 1 of 7) MIR|SINE|MIR 129569 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 367-220 chr2 136673057 136673199 + 3 NA Intergenic MIRb|SINE|MIR -92417 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 373-414 chr8 86332212 86332462 + 3 NA Intergenic L1MEf|LINE|L1 -10210 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 837-2 chr10 43514014 43514525 + 3 NA Intergenic AluSx|SINE|Alu 54190 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 885-18 chr5 46253555 46253986 + 3 NA Intergenic ALR/Alpha|Satellite|centr -557390 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 610-182 chrX 102004412 102004633 + 3 NA Intergenic L1PA15|LINE|L1 -72495 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 379-376 chr9 78948742 78948913 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 196839 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 414-250 chr4 153705588 153705879 + 3 NA 3' UTR (NM_001318796, exon 3 of 3) 3' UTR (NM_001318796, exon 3 of 3) 21453 NM_001318787 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 457-195 chr5 27105421 27105619 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -66934 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 588-13 chr10 84039754 84040091 + 3 NA Intergenic AluSz|SINE|Alu -99587 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 474-37 chr10 76197254 76197481 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 414606 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 669-52 chr2 81179849 81180231 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 286906 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 369-23 chr1 214729051 214729193 + 3 NA Intergenic L1ME3G|LINE|L1 125927 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 263-182 chr19 56587139 56587321 + 3 NA Intergenic AluY|SINE|Alu -8066 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 520-125 chr18 13456551 13456863 + 3 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -3240 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 482-307 chrX 144813357 144813580 + 3 NA Intergenic L1M1|LINE|L1 -434035 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 362-200 chr18 68770012 68770180 + 3 NA intron (NM_001093729, intron 3 of 9) L3|LINE|CR1 -27984 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 854 chr1 33417269 33417817 + 3 NA Intergenic L1MEc|LINE|L1 -41950 NM_001330488 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 407-62 chr12 21729721 21729930 + 3 NA Intergenic Intergenic 44881 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 727-40 chr16 86169278 86169766 + 3 NA Intergenic L1MD1|LINE|L1 -26659 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 224-54 chr11 113284074 113284194 + 3 NA Intergenic L2|LINE|L2 -10233 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 182-34 chr11 127421714 127421781 + 3 NA Intergenic L1MA2|LINE|L1 150677 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 507-15 chr1 184145550 184145879 + 3 NA Intergenic L2a|LINE|L2 93984 NM_001300766 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 512-48 chr11 39867419 39867675 + 3 NA Intergenic L1M4b|LINE|L1 425583 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 669-79 chr4 58804778 58805055 + 3 NA Intergenic Intergenic -179366 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 505-247 chr5 89502529 89502843 + 3 NA Intergenic L2c|LINE|L2 514034 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 670-87 chr4 77135036 77135423 + 3 NA Intergenic AluJr|SINE|Alu -21978 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 276-48 chr10 26413745 26413946 + 3 NA Intergenic Intergenic -24496 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 466-178 chr3 174758237 174758511 + 3 NA Intergenic Intergenic -100960 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 477-282 chr8 84823491 84823728 + 3 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 117682 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 510-141 chr2 52642988 52643253 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 59495 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 174-71 chr2 211007461 211007524 + 3 NA Intergenic L1MEd|LINE|L1 389921 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 438-50 chr11 24041557 24041793 + 3 NA Intergenic Intergenic -455378 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 517-44 chr11 54825715 54826103 + 3 NA Intergenic ALR/Alpha|Satellite|centr 119077 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 927-13 chr4 138767556 138767965 + 3 NA Intergenic Intergenic 244886 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 548-107 chr2 22250402 22250719 + 3 NA Intergenic Intergenic -285919 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 838-31 chr7 33171163 33171639 + 3 NA intron (NM_198428, intron 4 of 22) L1PA2|LINE|L1 41837 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 559-197 chr8 141877551 141877847 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -91386 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 734-72 chr7 77826086 77826496 + 3 NA intron (NM_001366088, intron 1 of 11) HAL1b|LINE|L1 -13837 NM_020432 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 830-8 chr11 39254726 39255249 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 606129 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 604-35 chr12 13369195 13369422 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR 7437 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 389-35 chr10 64569384 64569530 + 3 NA Intergenic Intergenic -256071 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 485-177 chr3 34325457 34325675 + 3 NA Intergenic Intergenic 526936 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 502-76 chr13 63298870 63299222 + 3 NA intron (NR_126409, intron 2 of 6) intron (NR_126409, intron 2 of 6) 29048 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 550-97 chr18 25615484 25615693 + 3 NA Intergenic L1ME4a|LINE|L1 -263422 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 740-77 chr8 141819825 141820289 + 3 NA Intergenic Intergenic -33744 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 235-231 chr3 61823543 61823674 + 3 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 262037 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 960-14 chr18 37611946 37612445 + 3 NA Intergenic Intergenic -44940 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 509-176 chr4 121437285 121437544 + 3 NA Intergenic L1M2|LINE|L1 -56396 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 486-180 chr20 58538349 58538657 + 3 NA intron (NR_034147, intron 5 of 6) MIR|SINE|MIR -23104 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 358-273 chr21 27343641 27343863 + 3 NA Intergenic Intergenic -376664 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 649-81 chr4 59648904 59649278 + 3 NA Intergenic Intergenic 635518 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1107-4 chr13 75898573 75899014 + 3 NA Intergenic Intergenic 21907 NR_126373 104326189 Hs.671216 NR_126373 ENSG00000223458 LMO7DN-IT1 C13orf45-IT1|TCONS_00021569 LMO7DN intronic transcript 1 ncRNA 866-13 chr12 43246252 43247046 + 3 NA Intergenic MIRb|SINE|MIR 91334 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 324-421 chr5 32595926 32596063 + 3 NA intron (NM_006713, intron 3 of 4) L1ME2|LINE|L1 10437 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 721-25 chr17 51866711 51867096 + 3 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 291811 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 637-83 chr3 155197670 155198186 + 3 NA Intergenic MIR3|SINE|MIR -43017 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 855-38 chr4 117124695 117125193 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -39368 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 432-28 chr10 41914529 41914739 + 3 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 453411 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 539-167 chr5 59962573 59962867 + 3 NA intron (NM_001165899, intron 3 of 16) Arthur1|DNA|hAT-Tip100 -68994 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 271-134 chr14 57626954 57627098 + 3 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -133169 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 571-14 chr10 57842115 57842431 + 3 NA Intergenic MIR|SINE|MIR 425621 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 434-38 chr10 79568675 79569013 + 3 NA Intergenic L1MA5|LINE|L1 -8437 NM_001098668 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 474-215 chr4 106091335 106091516 + 3 NA intron (NM_001290768, intron 26 of 26) LTR12C|LTR|ERV1 -68947 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 648-132 chr7 16108257 16108644 + 3 NA intron (NM_001101426, intron 9 of 9) L1MA7|LINE|L1 -102036 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 431-13 chr1 79763967 79764168 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -757337 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 1044-13 chr20 47522146 47522660 + 3 NA intron (NM_181659, intron 1 of 22) AluY|SINE|Alu 20516 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 321-409 chr4 33566207 33566390 + 3 NA Intergenic Intergenic 473595 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 503-308 chr9 101949334 101949566 + 3 NA Intergenic L1MDa|LINE|L1 -210870 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 608-129 chr5 179078437 179078794 + 3 NA intron (NM_014594, intron 4 of 4) intron (NM_014594, intron 4 of 4) 18242 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 1364-4 chr2 116274825 116275703 + 3 NA Intergenic Intergenic 931449 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 378-134 chr14 50471148 50471354 + 3 NA intron (NM_198794, intron 9 of 31) intron (NM_198794, intron 9 of 31) 61318 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 285-225 chr2 179640729 179640868 + 3 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 19396 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 932-37 chr8 138748368 138748855 + 3 NA intron (NM_152888, intron 22 of 64) intron (NM_152888, intron 22 of 64) 165430 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 383-415 chr9 96770877 96771072 + 3 NA intron (NM_001314060, intron 2 of 4) L1ME3|LINE|L1 7113 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 808-54 chr7 62987534 62988038 + 3 NA Intergenic ALR/Alpha|Satellite|centr 316270 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 523-222 chr5 84322744 84322953 + 3 NA intron (NM_001278642, intron 1 of 9) L1MB3|LINE|L1 62019 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 585-48 chr15 46100015 46100363 + 3 NA Intergenic Intergenic 394994 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 383-210 chr2 196887795 196887961 + 3 NA intron (NM_001321099, intron 11 of 27) intron (NM_001321099, intron 11 of 27) 38829 NM_024989 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 431-106 chr17 71555587 71555759 + 3 NA Intergenic MER3|DNA|hAT-Charlie -353494 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 371-207 chr2 228944214 228944448 + 3 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat 287761 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 394-98 chr13 94499329 94499523 + 3 NA intron (NM_001322184, intron 1 of 8) intron (NM_001322184, intron 1 of 8) -19744 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 333-238 chr2 58579828 58580001 + 3 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 59161 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 333-101 chr11 120768028 120768267 + 3 NA intron (NM_001282470, intron 2 of 19) L1MA9|LINE|L1 50968 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 548-39 chr11 87658759 87659051 + 3 NA Intergenic L1ME2|LINE|L1 60506 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 780-40 chr3 169678430 169678818 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -14912 NM_001366466 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 607-144 chr8 91734798 91735151 + 3 NA Intergenic L2a|LINE|L2 282706 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 639-67 chr2 198322695 198323042 + 3 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 52229 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 441-104 chr18 74575221 74575557 + 3 NA intron (NM_032649, intron 7 of 11) intron (NM_032649, intron 7 of 11) 22446 NR_024484 400657 Hs.61508 NM_001008234 ENSG00000264247 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 387-70 chr11 121794444 121794628 + 3 NA Intergenic Intergenic 305308 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 919-23 chr7 77236125 77236510 + 3 NA intron (NM_020879, intron 2 of 18) intron (NM_020879, intron 2 of 18) -36498 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 588-80 chr2 237454361 237454700 + 3 NA Intergenic LTR39|LTR|ERV1 -31880 NM_001281474 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 397-85 chr14 51649556 51649715 + 3 NA non-coding (NR_037676, exon 1 of 1) non-coding (NR_037676, exon 1 of 1) 2109 NR_037676 145438 Hs.645410 NR_037676 ENSG00000273888 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 715-71 chr5 118361342 118361776 + 3 NA intron (NR_104610, intron 9 of 9) AluSx1|SINE|Alu 78985 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 434-76 chr13 96796308 96796509 + 3 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 187764 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 419-307 chr9 31592304 31592558 + 3 NA Intergenic Intergenic -210941 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 388-373 chr9 103825281 103825494 + 3 NA Intergenic Intergenic -174322 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 599-141 chr9 27090115 27090374 + 3 NA Intergenic L1MB8|LINE|L1 -18897 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 570-16 chr1 237236271 237236599 + 3 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 194251 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 413-62 chr12 17835867 17836119 + 3 NA Intergenic Intergenic 162694 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 367-70 chr11 26681904 26682124 + 3 NA intron (NM_178498, intron 11 of 14) intron (NM_178498, intron 11 of 14) 40046 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 659-56 chr2 127612888 127613165 + 3 NA intron (NM_001080527, intron 25 of 46) intron (NM_001080527, intron 25 of 46) -32838 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 1220-2 chr18 80088906 80089413 + 3 NA Intergenic (CTTTTT)n|Simple_repeat|Simple_repeat -20103 NM_014913 22850 Hs.131915 NM_014913 ENSG00000101544 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 539-107 chr2 49131645 49131943 + 3 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 22721 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 477-31 chr10 15619731 15620013 + 3 NA intron (NM_001291494, intron 12 of 28) intron (NM_001291494, intron 12 of 28) 100050 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 600-24 chr11 94893702 94894105 + 3 NA Intergenic L1MA5|LINE|L1 79653 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 632-83 chr4 59146403 59146693 + 3 NA Intergenic L1PA11|LINE|L1 132975 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 355-182 chr16 52840331 52840519 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 212448 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 481-53 chr11 44025670 44025875 + 3 NA Intergenic L1MB7|LINE|L1 -22209 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 469-46 chr11 13918742 13918933 + 3 NA Intergenic Intergenic 6026 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 538-100 chr19 56492235 56492481 + 3 NA intron (NR_036521, intron 1 of 1) L2b|LINE|L2 14234 NR_036522 100128252 Hs.23133 NM_198879 ENSG00000166770 ZNF667-AS1 MORT ZNF667 antisense RNA 1 (head to head) ncRNA 1090-3 chr12 108074275 108075014 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -54644 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 558-208 chr8 35130985 35131183 + 3 NA Intergenic L1MB7|LINE|L1 -104391 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 967 chr1 14841486 14842095 + 3 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -82339 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 557-49 chr13 80271120 80271322 + 3 NA Intergenic AluY|SINE|Alu 68438 NM_001318537 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 499-174 chr3 117626618 117626911 + 3 NA Intergenic Intergenic 64161 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 390-140 chr17 51529001 51529225 + 3 NA Intergenic L1ME4a|LINE|L1 93686 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 1029-13 chr5 64771119 64771579 + 3 NA intron (NM_001297645, intron 1 of 10) L2c|LINE|L2 2419 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 667-24 chr12 37935019 37935341 + 3 NA Intergenic ALR/Alpha|Satellite|centr -381594 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 519-163 chr4 79588315 79588644 + 3 NA Intergenic Intergenic 95886 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 1195-5 chr12 133204800 133205401 + 3 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 23605 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 734-78 chr8 133732107 133732475 + 3 NA Intergenic L2b|LINE|L2 45061 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 1138-4 chr10 56547088 56547900 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -186221 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 568-152 chr4 93675064 93675269 + 3 NA intron (NM_001286838, intron 13 of 14) (TG)n|Simple_repeat|Simple_repeat -153587 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 839-56 chr9 103302064 103302559 + 3 NA intron (NR_121578, intron 3 of 9) intron (NR_121578, intron 3 of 9) 22722 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 398-31 chr10 14179401 14179626 + 3 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 105229 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 376-357 chr6 155928707 155928932 + 3 NA Intergenic L1MB8|LINE|L1 -17978 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 731-32 chr16 65790275 65790831 + 3 NA Intergenic Intergenic -214253 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 653 chr1 39777028 39777316 + 3 NA intron (NM_001720, intron 1 of 6) L1MC5a|LINE|L1 -5824 NM_022120 64064 Hs.472491 NM_022120 ENSG00000198754 OXCT2 FKSG25|SCOTT 3-oxoacid CoA-transferase 2 protein-coding 486-245 chr5 119276974 119277190 + 3 NA intron (NM_001077654, intron 1 of 1) MER44A|DNA|TcMar-Tigger 8323 NM_001077654 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 511-48 chr12 44330356 44330624 + 3 NA intron (NM_001286211, intron 6 of 6) MER33|DNA|hAT-Charlie 494409 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 444-153 chr3 68418679 68418997 + 3 NA intron (NM_001252216, intron 3 of 4) MIRb|SINE|MIR -81799 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 435-167 chr4 46780625 46780823 + 3 NA intron (NM_130902, intron 2 of 2) Charlie29a|DNA|hAT-Charlie 128521 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 677-36 chr16 48651854 48652260 + 3 NA Intergenic Intergenic -41877 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 569-89 chr2 15995651 15995868 + 3 NA Intergenic Intergenic -53326 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 383-141 chr16 26837557 26837714 + 3 NA Intergenic Intergenic -229292 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 1109-8 chr6 85572118 85572654 + 3 NA intron (NM_001350538, intron 2 of 28) intron (NM_001350538, intron 2 of 28) 21472 NM_153816 57231 Hs.485871 NM_020468 ENSG00000135317 SNX14 RGS-PX2|SCAR20 sorting nexin 14 protein-coding 494-178 chr3 89876282 89876596 + 3 NA Intergenic Intergenic 768818 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 375-283 chr4 46494172 46494424 + 3 NA Intergenic Intergenic -104170 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 882-9 chr11 81345365 81345826 + 3 NA Intergenic Intergenic 545241 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 505-37 chr10 105230777 105231027 + 3 NA intron (NM_014978, intron 20 of 26) L1MC1|LINE|L1 -564686 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 673-128 chrUn_KI270442v1 98124 98453 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 266-225 chr21 30491026 30491127 + 3 NA TTS (NM_181609) TTS (NM_181609) 937 NM_181609 337970 Hs.60480 NM_181609 ENSG00000244025 KRTAP19-3 GTRHP|KAP19.3 keratin associated protein 19-3 protein-coding 585-172 chr9 105374288 105374535 + 3 NA intron (NM_001330731, intron 12 of 15) intron (NM_001330731, intron 12 of 15) -73623 NM_001145313 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 396-85 chr12 32837322 32837486 + 3 NA intron (NM_001005242, intron 6 of 12) MIR|SINE|MIR 59442 NM_004572 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 800-42 chr3 121824293 121824735 + 3 NA intron (NM_001023571, intron 5 of 11) L1MEf|LINE|L1 10546 NM_001023570 9657 Hs.604110 NM_001023570 ENSG00000173226 IQCB1 NPHP5|PIQ|SLSN5 IQ motif containing B1 protein-coding 429-304 chr8 114356002 114356165 + 3 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -919144 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 472-310 chr8 61927056 61927260 + 3 NA Intergenic Intergenic 37319 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 511-201 chr5 2078486 2078765 + 3 NA Intergenic Intergenic 191294 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 305-383 chr4 58756150 58756385 + 3 NA Intergenic Intergenic -219939 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 925-24 chr5 12515388 12516105 + 3 NA Intergenic Intergenic -59111 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 579-188 chrX 128170782 128171033 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -118504 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 470-87 chr16 8291336 8291705 + 3 NA Intergenic Intergenic 298318 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 656-97 chr5 98019791 98020086 + 3 NA Intergenic Intergenic 141301 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 407-107 chr17 21973008 21973193 + 3 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -229895 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 381-285 chr4 149400933 149401130 + 3 NA intron (NM_001363507, intron 13 of 13) intron (NM_001363507, intron 13 of 13) 246736 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 286-132 chr14 98409252 98409357 + 3 NA Intergenic Intergenic -302309 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 478-179 chr3 33334186 33334494 + 3 NA intron (NR_146129, intron 4 of 15) L1MEf|LINE|L1 56898 NR_146133 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 823-8 chr12 1059749 1060390 + 3 NA intron (NR_027949, intron 2 of 15) THE1A|LTR|ERVL-MaLR 32321 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 374-407 chr8 139512316 139512507 + 3 NA Intergenic Intergenic 190712 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 511-79 chr15 91796969 91797316 + 3 NA Intergenic L1ME3A|LINE|L1 -56566 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 565-145 chr5 96826201 96826524 + 3 NA Intergenic Intergenic -12217 NM_001198541 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 533-166 chr4 145364936 145365320 + 3 NA Intergenic L1PA4|LINE|L1 -24709 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 374-176 chr2 23213943 23214198 + 3 NA Intergenic Intergenic -171109 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 539-97 chr18 22482190 22482515 + 3 NA Intergenic MER66B|LTR|ERV1 -64437 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 459-250 chr5 158573180 158573430 + 3 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -163532 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 275-247 chr3 78965304 78965509 + 3 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 54053 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 694-86 chr3 60301720 60302167 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -221034 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 443-278 chr7 52454299 52454487 + 3 NA Intergenic Intergenic -581240 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 839-8 chr12 17870194 17870578 + 3 NA Intergenic L1P3|LINE|L1 197087 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 740-52 chr22 28405565 28405909 + 3 NA intron (NM_001145418, intron 2 of 22) MER66A|LTR|ERV1 -54132 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 405-74 chr13 34727606 34727793 + 3 NA Intergenic L1MEc|LINE|L1 -87014 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 428-166 chr22 25793630 25793920 + 3 NA intron (NM_001318245, intron 11 of 43) intron (NM_001318245, intron 11 of 43) 51587 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 514-257 chr7 7151652 7151923 + 3 NA Intergenic MIRb|SINE|MIR -30828 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 815-34 chr3 79588822 79589171 + 3 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 81109 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 322-243 chr2 55015931 55016117 + 3 NA intron (NM_153828, intron 1 of 6) L1ME4a|LINE|L1 -5752 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 707-54 chr2 123611092 123611420 + 3 NA Intergenic MER39B|LTR|ERV1 413918 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 397-332 chr8 67549317 67549471 + 3 NA intron (NM_020361, intron 2 of 10) L1MA10|LINE|L1 196966 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 355-317 chr3 35116837 35117011 + 3 NA intron (NR_110817, intron 2 of 3) L1MB3|LINE|L1 277099 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 329-96 chr11 78855054 78855196 + 3 NA intron (NM_001098816, intron 11 of 33) MLT1J|LTR|ERVL-MaLR -280261 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 621-79 chr3 175128398 175128704 + 3 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -13309 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 470-256 chr7 89231280 89231631 + 3 NA intron (NM_181646, intron 2 of 3) L1M4|LINE|L1 -435718 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 435-57 chr12 17124928 17125108 + 3 NA Intergenic Intergenic 136271 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 665-3 chr1 80309480 80309844 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -226093 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 797-50 chr7 31002898 31003439 + 3 NA Intergenic Intergenic 39215 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 381-291 chr5 3171277 3171485 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -6454 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 374-180 chr2 56845244 56845419 + 3 NA Intergenic L2|LINE|L2 -659561 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1608 chr17 34694302 34695457 + 3 NA Intergenic L1MB4|LINE|L1 114130 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 493-81 chr14 43853773 43854015 + 3 NA Intergenic Intergenic 653389 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 337-150 chr14 46926693 46926861 + 3 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -274996 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 328-317 chr20 43079663 43079795 + 3 NA intron (NM_133170, intron 1 of 31) L1MEi|LINE|L1 110177 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 492-235 chr6 162998572 162998911 + 3 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 55420 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 291-288 chr3 60273626 60273815 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -192811 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 661-48 chr2 114028171 114028589 + 3 NA TTS (NR_148509) TTS (NR_148509) -48396 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 478-212 chr4 75086457 75086773 + 3 NA Intergenic L1ME4a|LINE|L1 -1907 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 542-24 chr10 74054272 74054615 + 3 NA intron (NM_014000, intron 2 of 21) intron (NM_014000, intron 2 of 21) 56327 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 493-7 chr1 71470306 71470625 + 3 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 366547 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 721-82 chr8 76442737 76443010 + 3 NA intron (NR_105006, intron 2 of 5) intron (NR_105006, intron 2 of 5) 36219 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 964-16 chr2 98242408 98242922 + 3 NA intron (NM_001345864, intron 13 of 21) intron (NM_001345864, intron 13 of 21) 93132 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 433-278 chr8 82167906 82168097 + 3 NA Intergenic Intergenic -325715 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 613-51 chr2 4880271 4880591 + 3 NA Intergenic MIR|SINE|MIR -224209 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 443-197 chr3 51904585 51904852 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -1365 NM_152397 132141 Hs.671210 NM_152397 ENSG00000173389 IQCF1 - IQ motif containing F1 protein-coding 1447-2 chr11 13589705 13590758 + 3 NA Intergenic L1MA3|LINE|L1 -78437 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 363-451 chr8 118562223 118562424 + 3 NA intron (NM_001101676, intron 2 of 4) L2|LINE|L2 -58678 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 448-181 chr4 57971191 57971458 + 3 NA Intergenic Intergenic 545452 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 445-192 chr4 35892834 35893164 + 3 NA Intergenic Intergenic 350940 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 448-102 chr19 37238352 37238618 + 3 NA intron (NM_001345948, intron 5 of 5) L2a|LINE|L2 12021 NM_152604 163087 Hs.590975 NM_152604 ENSG00000188283 ZNF383 HSD17 zinc finger protein 383 protein-coding 556-235 chr8 136852985 136853437 + 3 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 322413 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 688-24 chr11 79634615 79634997 + 3 NA Intergenic MIRb|SINE|MIR -193776 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 1246-7 chr3 134119650 134120431 + 3 NA Intergenic L1PB4|LINE|L1 -62392 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 449-96 chr17 33087505 33087754 + 3 NA intron (NM_183377, intron 3 of 9) AluJb|SINE|Alu 94778 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 576-87 chr2 118513577 118513801 + 3 NA Intergenic Intergenic 89277 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 553-203 chr6 4486286 4486534 + 3 NA Intergenic Intergenic -2388 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 376-215 chr20 42004685 42004844 + 3 NA Intergenic Intergenic -386387 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 1079-8 chr4 96493066 96493580 + 3 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 182620 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 517-208 chr5 15545491 15545725 + 3 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 44170 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 365-56 chr10 90886370 90886580 + 3 NA intron (NM_006413, intron 6 of 10) intron (NM_006413, intron 6 of 10) 14501 NM_001104546 10556 Hs.139120 NM_006413 ENSG00000148688 RPP30 TSG15 ribonuclease P/MRP subunit p30 protein-coding 759-67 chr7 86625413 86625799 + 3 NA Intergenic MER54B|LTR|ERVL -18303 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 772-38 chr4 20180002 20180443 + 3 NA Intergenic L1M6|LINE|L1 -71683 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 484-57 chr14 20004387 20004603 + 3 NA Intergenic Intergenic 2433 NR_145508 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 465-143 chr2 166792044 166792357 + 3 NA Intergenic L1PREC2|LINE|L1 -96287 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 489-163 chr21 16141601 16141863 + 3 NA intron (NR_111005, intron 1 of 6) L1PA13|LINE|L1 -39666 NR_136551 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 480-291 chr8 75216259 75216507 + 3 NA Intergenic HAL1|LINE|L1 62098 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 459-110 chr17 62982551 62982740 + 3 NA intron (NM_025185, intron 1 of 25) L2|LINE|L2 16410 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 195-216 chr6 101915542 101915661 + 3 NA intron (NM_001166247, intron 11 of 16) intron (NM_001166247, intron 11 of 16) 516616 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 323-183 chr16 76094144 76094352 + 3 NA Intergenic L1MEg|LINE|L1 -183153 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 517-70 chr13 93134575 93134846 + 3 NA Intergenic L2|LINE|L2 89369 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 425-130 chr2 6559666 6559894 + 3 NA Intergenic Intergenic 74007 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 553-95 chr18 71124492 71124765 + 3 NA Intergenic L1ME1|LINE|L1 454328 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 520-10 chr1 80601108 80601308 + 3 NA intron (NR_125940, intron 2 of 3) L1MB1|LINE|L1 -40079 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 494-226 chr5 46223051 46223336 + 3 NA Intergenic ALR/Alpha|Satellite|centr -526813 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 502-210 chr5 8918871 8919150 + 3 NA Intergenic Intergenic 79278 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 537-192 chr5 40048411 40048638 + 3 NA Intergenic Intergenic -3767 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 567-132 chr4 88474363 88474585 + 3 NA intron (NM_016323, intron 11 of 22) intron (NM_016323, intron 11 of 22) 17355 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 510-121 chr19 36877623 36877938 + 3 NA exon (NM_003419, exon 3 of 3) exon (NM_003419, exon 3 of 3) 26129 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 610-94 chr2 229233726 229234079 + 3 NA intron (NM_001330158, intron 1 of 3) intron (NM_001330158, intron 1 of 3) -1810 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 472-134 chr18 67072154 67072437 + 3 NA Intergenic Intergenic -9289 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 255-320 chr5 29611128 29611266 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -215221 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 311-128 chr14 38920458 38920628 + 3 NA Intergenic Intergenic -3661 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 462-181 chr3 81695019 81695319 + 3 NA intron (NM_000158, intron 2 of 15) LTR73|LTR|ERV1 66476 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 831-6 chr10 130354810 130355290 + 3 NA Intergenic MER21C|LTR|ERVL 218641 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 985-6 chr1 232896891 232897409 + 3 NA Intergenic Intergenic -53461 NR_138026 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 558-236 chrX 43215136 43215338 + 3 NA intron (NR_110387, intron 4 of 5) L1PA15|LINE|L1 38243 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 389-56 chr11 24043083 24043288 + 3 NA Intergenic Intergenic -453868 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 582-125 chr5 107974610 107974935 + 3 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -303835 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 556-179 chr5 107250550 107250880 + 3 NA Intergenic Intergenic -239701 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 313-263 chr2 98197294 98197538 + 3 NA intron (NR_144297, intron 12 of 18) L1MC4a|LINE|L1 47883 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 297-219 chr2 102216355 102216544 + 3 NA intron (NM_001351447, intron 4 of 9) L1M1|LINE|L1 29135 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 363-54 chr10 62236416 62236576 + 3 NA intron (NM_145307, intron 5 of 11) L1MA9|LINE|L1 32348 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 439-194 chr3 181975645 181975826 + 3 NA intron (NR_104146, intron 5 of 7) L1MA4|LINE|L1 23371 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 383-217 chr20 6146322 6146496 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR -22865 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 537-221 chr6 140867456 140867684 + 3 NA Intergenic L1M8|LINE|L1 183756 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 429-86 chr14 20600030 20600219 + 3 NA intron (NR_122043, intron 3 of 4) L2b|LINE|L2 -9301 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 293-411 chr7 93001737 93001859 + 3 NA Intergenic L2a|LINE|L2 116181 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 1519-4 chr5 107170549 107171423 + 3 NA Intergenic LOR1a|LTR|ERV1 -159972 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 379-95 chr14 75376112 75376309 + 3 NA Intergenic Intergenic -51514 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 476-268 chr8 101247746 101248012 + 3 NA Intergenic Intergenic -41815 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 467-274 chr8 27126098 27126311 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -77241 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 285-275 chr3 94144327 94144483 + 3 NA Intergenic Intergenic 81344 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 221-168 chr21 20496566 20496652 + 3 NA Intergenic Intergenic -237924 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 461-284 chr9 17723415 17723645 + 3 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 144464 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 634-150 chr8 26926007 26926444 + 3 NA Intergenic L1MC3|LINE|L1 -58947 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 471-135 chr2 107380242 107380551 + 3 NA Intergenic Intergenic -30871 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 651-43 chr15 100217153 100217477 + 3 NA intron (NM_139057, intron 7 of 21) L1MB7|LINE|L1 124660 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 642-27 chr12 93923692 93923969 + 3 NA intron (NR_135017, intron 1 of 2) AluSp|SINE|Alu 19776 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 418-154 chr3 48172082 48172333 + 3 NA intron (NM_201567, intron 8 of 13) intron (NM_201567, intron 8 of 13) 16210 NM_201567 993 Hs.437705 NM_001789 ENSG00000164045 CDC25A CDC25A2 cell division cycle 25A protein-coding 429-29 chr1 247161745 247161963 + 3 NA intron (NM_003431, intron 1 of 3) intron (NM_003431, intron 1 of 3) 10163 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 446-57 chr10 128332589 128332777 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 46733 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 572-104 chr20 41573237 41573605 + 3 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 44956 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 439-275 chr7 126014253 126014520 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -750095 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 534-70 chr14 46110389 46110677 + 3 NA intron (NR_102702, intron 1 of 3) L1MA3|LINE|L1 46374 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 409-111 chr17 67735087 67735350 + 3 NA intron (NM_001303272, intron 7 of 16) L2b|LINE|L2 -5452 NR_003706 100124536 Hs.693446 NR_003706 ENSG00000200394 SNORA38B - small nucleolar RNA, H/ACA box 38B snoRNA 707-26 chr14 73963015 73963347 + 3 NA TTS (NM_182480) TTS (NM_182480) 12879 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 520-293 chr8 79887440 79887779 + 3 NA Intergenic Intergenic -15872 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 504-205 chr4 176509237 176509459 + 3 NA Intergenic Intergenic 189382 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 565-118 chr3 103793227 103793430 + 3 NA Intergenic L1ME1|LINE|L1 -269212 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 508-18 chr1 239479678 239479920 + 3 NA intron (NM_001347716, intron 1 of 7) Tigger3c|DNA|TcMar-Tigger 93231 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 359-73 chr10 116261163 116261289 + 3 NA intron (NM_005264, intron 4 of 10) intron (NM_005264, intron 4 of 10) -5431 NM_001348099 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 491 chr1 49344034 49344333 + 3 NA intron (NR_136623, intron 2 of 12) MER41-int|LTR|ERV1 86772 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 839-32 chr3 51172517 51172941 + 3 NA intron (NM_004947, intron 12 of 52) L1MA9|LINE|L1 -212562 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 411-21 chr1 247065444 247065743 + 3 NA intron (NM_033213, intron 1 of 3) L1M5|LINE|L1 13218 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 702 chr1 34509184 34509555 + 3 NA Intergenic Intergenic 160325 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 547-89 chr19 13453953 13454245 + 3 NA intron (NM_023035, intron 2 of 46) MER21B|LTR|ERVL 52361 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 586-99 chr3 88563168 88563548 + 3 NA Intergenic Intergenic 224902 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 955-23 chr8 101754700 101755310 + 3 NA intron (NM_001040625, intron 4 of 6) MIRc|SINE|MIR 35964 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 527-169 chr3 24971899 24972092 + 3 NA intron (NM_001290216, intron 2 of 10) L1MA4|LINE|L1 142672 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 454-229 chr4 57502988 57503151 + 3 NA Intergenic Intergenic 77197 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 457-267 chr8 137490174 137490346 + 3 NA Intergenic Intergenic -76672 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 227-79 chr12 41129376 41129458 + 3 NA Intergenic Intergenic -58903 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 808-17 chr15 46962895 46963346 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -220969 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 351-509 chr9 12958838 12959064 + 3 NA Intergenic LTR77|LTR|ERV1 13682 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 569-73 chr18 3813219 3813512 + 3 NA intron (NM_001242762, intron 2 of 9) Tigger3a|DNA|TcMar-Tigger 31993 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 475-159 chr20 37440479 37440648 + 3 NA Intergenic Intergenic 79740 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 515-130 chr2 183491239 183491555 + 3 NA Intergenic Intergenic 366954 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 810-51 chr7 4353531 4353905 + 3 NA Intergenic L1ME1|LINE|L1 -218881 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 686-50 chr20 40032787 40033152 + 3 NA Intergenic Intergenic 28508 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 498-291 chrX 46131261 46131494 + 3 NA Intergenic MIRb|SINE|MIR 196297 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 577-197 chr8 140106846 140107134 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -6455 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 516-56 chr12 118745502 118745777 + 3 NA Intergenic Intergenic 16040 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 621-85 chr4 65713291 65713709 + 3 NA Intergenic L1MEf|LINE|L1 -43005 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 499-95 chr18 42226686 42226881 + 3 NA intron (NR_046454, intron 3 of 6) L1MC5|LINE|L1 40115 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 602-48 chr19 5514212 5514526 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 53665 NR_027064 257000 Hs.515575 NM_153375 ENSG00000223573 TINCR LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16 TINCR ubiquitin domain containing ncRNA 523-131 chr2 63301820 63302118 + 3 NA intron (NR_148704, intron 14 of 18) HUERS-P3b-int|LTR|ERV1 136038 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 913-19 chr2 84661309 84661825 + 3 NA intron (NM_001370, intron 37 of 76) L1M4|LINE|L1 145112 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 564-123 chr3 40393230 40393448 + 3 NA intron (NR_040100, intron 3 of 3) intron (NR_040100, intron 3 of 3) 6155 NM_001291961 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 364-177 chr17 79548832 79549081 + 3 NA intron (NM_001350451, intron 1 of 14) MIRb|SINE|MIR -32808 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 354-336 chr4 83429813 83429957 + 3 NA intron (NM_001297757, intron 10 of 16) intron (NM_001297757, intron 10 of 16) 25938 NM_133636 113510 Hs.480101 NM_133636 ENSG00000163312 HELQ HEL308 helicase, POLQ like protein-coding 602-10 chr10 68350534 68350841 + 3 NA intron (NR_103476, intron 16 of 18) L1ME3D|LINE|L1 -17759 NM_001033083 64081 Hs.198158 NM_022129 ENSG00000108187 PBLD HEL-S-306|MAWBP|MAWDBP phenazine biosynthesis like protein domain containing protein-coding 268-218 chr20 1079324 1079500 + 3 NA Intergenic Intergenic -33817 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 524-61 chr14 45942624 45942975 + 3 NA Intergenic L1ME3B|LINE|L1 -121360 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 473-23 chr1 232490791 232491011 + 3 NA exon (NM_020808, exon 3 of 21) exon (NM_020808, exon 3 of 21) 24707 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 510-285 chr8 137930448 137930723 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 152960 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 527-54 chr11 133616608 133616803 + 3 NA Intergenic L1MEg|LINE|L1 -84204 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 520-27 chr1 247012639 247012864 + 3 NA intron (NR_037894, intron 1 of 6) AluSc|SINE|Alu -4694 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 372 chr1 11507729 11507966 + 3 NA intron (NM_020780, intron 3 of 20) L2b|LINE|L2 28692 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 425-36 chr10 52387598 52387822 + 3 NA Intergenic L1MC5a|LINE|L1 67562 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 472-95 chr15 25297545 25297745 + 3 NA intron (NR_146177, intron 146 of 147) L1MCa|LINE|L1 19302 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 220-89 chr12 63757807 63757924 + 3 NA Intergenic Intergenic -22044 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 200-7 chr1 79173664 79173772 + 3 NA Intergenic Intergenic -166988 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 466-203 chr5 41526498 41526674 + 3 NA Intergenic MER4E|LTR|ERV1 -15985 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 348-64 chr10 103766497 103766666 + 3 NA intron (NM_014631, intron 3 of 13) intron (NM_014631, intron 3 of 13) 19802 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 1188-6 chr19 53238563 53239226 + 3 NA intron (NM_001317998, intron 4 of 4) intron (NM_001317998, intron 4 of 4) 15956 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 363-453 chr8 124974551 124974816 + 3 NA intron (NM_152412, intron 1 of 2) AluSc8|SINE|Alu 1388 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 454-177 chr2 148299624 148299966 + 3 NA intron (NM_018328, intron 4 of 14) intron (NM_018328, intron 4 of 14) -278191 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 465-98 chr16 78426160 78426442 + 3 NA intron (NM_001291997, intron 6 of 7) intron (NM_001291997, intron 6 of 7) 326647 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 396-206 chr22 28242142 28242384 + 3 NA intron (NM_001145418, intron 5 of 22) Tigger13a|DNA|TcMar-Tigger -217606 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 400-304 chr6 44349369 44349639 + 3 NA intron (NM_145026, intron 2 of 8) Kanga1d|DNA|TcMar-Tc2 6844 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 619-31 chr12 2758309 2758655 + 3 NA intron (NR_146317, intron 3 of 3) L1PB1|LINE|L1 -36488 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FKBP prolyl isomerase 4 protein-coding 964-24 chr4 128594365 128595004 + 3 NA Intergenic Intergenic 166668 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 550-226 chr8 54942560 54942816 + 3 NA Intergenic L1PB4|LINE|L1 -159340 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 710-10 chr10 31507081 31507403 + 3 NA intron (NM_001323638, intron 8 of 12) L1MA4A|LINE|L1 -107487 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 637-37 chr14 45701769 45702083 + 3 NA Intergenic Intergenic 13676 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 800-30 chr19 58153039 58153642 + 3 NA Intergenic AluSx|SINE|Alu -2551 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 396-103 chr14 42903415 42903617 + 3 NA Intergenic L1MCb|LINE|L1 1296660 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 830-38 chr4 53841762 53842311 + 3 NA Intergenic LTR16A1|LTR|ERVL 145246 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 408-196 chr21 27729371 27729568 + 3 NA intron (NR_024357, intron 1 of 3) L1MEf|LINE|L1 7090 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 723-78 chr8 89132580 89133023 + 3 NA Intergenic MIR|SINE|MIR 624910 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 379-75 chr12 100825439 100825743 + 3 NA intron (NM_001286615, intron 1 of 27) intron (NM_001286615, intron 1 of 27) 30815 NM_178826 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 495-271 chr9 80100795 80101143 + 3 NA Intergenic L1M5|LINE|L1 125946 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 576-171 chr8 117607308 117607816 + 3 NA Intergenic Intergenic 86849 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 942-40 chr8 139178729 139179324 + 3 NA Intergenic LTR2B|LTR|ERV1 -264985 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 387-7 chr1 105250893 105251103 + 3 NA Intergenic L1MA1|LINE|L1 367937 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 821-22 chr2 5901872 5902360 + 3 NA Intergenic Intergenic -30571 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 387-88 chr12 93996048 93996208 + 3 NA Intergenic Intergenic -52522 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 507-162 chr3 88566503 88566709 + 3 NA Intergenic L1ME2|LINE|L1 228150 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 305-429 chr5 37801612 37801829 + 3 NA Intergenic Intergenic 33102 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 655-76 chr22 34212026 34212393 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -289321 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 644-24 chr16 9451439 9451837 + 3 NA intron (NR_126349, intron 1 of 4) L2c|LINE|L2 3867 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 516-226 chr6 55244034 55244344 + 3 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) -83280 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 677-21 chr11 109243295 109243680 + 3 NA Intergenic Intergenic -178703 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 579-48 chr16 54497984 54498309 + 3 NA Intergenic HAL1|LINE|L1 -127447 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 527-17 chr1 238124520 238124804 + 3 NA Intergenic Intergenic -233740 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 456-248 chr5 40043193 40043416 + 3 NA Intergenic Intergenic -8987 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 614-58 chr2 145996199 145996533 + 3 NA Intergenic L1M4b|LINE|L1 -590691 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 843-33 chr5 12364535 12365037 + 3 NA Intergenic Intergenic -210071 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 517-296 chrUn_GL000216v2 43776 44036 + 3 NA NA (CATTC)n|Satellite|Satellite NA NA 458-233 chr7 28211623 28211991 + 3 NA intron (NR_034097, intron 2 of 3) L1MC4|LINE|L1 -31012 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 302-30 chr1 233489915 233490046 + 3 NA Intergenic Intergenic -124126 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 410-165 chr20 50676368 50676641 + 3 NA intron (NM_001290268, intron 1 of 21) AluJo|SINE|Alu 15038 NM_001290268 140876 Hs.372578 NM_080829 ENSG00000042062 RIPOR3 C20orf175|C20orf176|FAM65C RIPOR family member 3 protein-coding 205-150 chr2 135358684 135358773 + 3 NA intron (NM_001286569, intron 3 of 21) intron (NM_001286569, intron 3 of 21) 171857 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 461-90 chr15 98479596 98479867 + 3 NA intron (NM_182562, intron 4 of 6) FRAM|SINE|Alu 34605 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 495-55 chr12 121543100 121543474 + 3 NA intron (NM_001005366, intron 6 of 22) AluSx1|SINE|Alu 36959 NM_001005366 84678 Hs.524800 NM_032590 ENSG00000089094 KDM2B CXXC2|FBXL10|Fbl10|JHDM1B|PCCX2 lysine demethylase 2B protein-coding 1093-9 chr21 16729242 16729880 + 3 NA Intergenic Intergenic 139324 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 477-296 chr8 142309618 142309907 + 3 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 93420 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 539-10 chr1 106971022 106971297 + 3 NA Intergenic Intergenic -85515 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 320-575 chr8 130343400 130343574 + 3 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -46954 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 825 chr1 192397957 192398515 + 3 NA Intergenic MER39|LTR|ERV1 81244 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 501-272 chr8 136860326 136860631 + 3 NA intron (NR_147196, intron 4 of 5) L1MC|LINE|L1 329680 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 570-6 chr1 76387590 76387879 + 3 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 312988 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 707-48 chr2 33487385 33487770 + 3 NA intron (NM_001349975, intron 3 of 19) intron (NM_001349975, intron 3 of 19) 10928 NM_001349976 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 581-156 chr7 40936462 40936749 + 3 NA Intergenic L1MB7|LINE|L1 43334 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 526-41 chr11 55148878 55149111 + 3 NA Intergenic ALR/Alpha|Satellite|centr -113161 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 640-27 chr12 118918689 118919149 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -62622 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 665-70 chr4 92412502 92412827 + 3 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 108265 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 1220-6 chr3 3944071 3944612 + 3 NA Intergenic AluSz6|SINE|Alu -143466 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 545-28 chr10 88142709 88142992 + 3 NA Intergenic L1ME3B|LINE|L1 279225 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 443-256 chr5 154914971 154915222 + 3 NA intron (NM_015465, intron 13 of 27) intron (NM_015465, intron 13 of 27) 23115 NM_015465 25929 Hs.483921 NM_015465 ENSG00000082516 GEMIN5 GEMIN-5 gem nuclear organelle associated protein 5 protein-coding 444-157 chr3 121665496 121665738 + 3 NA intron (NM_001256486, intron 20 of 21) intron (NM_001256486, intron 20 of 21) -4714 NM_005335 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 774 chr1 90139219 90139719 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 144359 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 656-141 chr9 102261970 102262328 + 3 NA Intergenic Intergenic -257488 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 357-104 chr14 28360586 28360749 + 3 NA Intergenic L1M4|LINE|L1 404652 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 669-56 chr2 160087702 160088040 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 -25256 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 332-426 chr5 119468680 119468868 + 3 NA intron (NM_000414, intron 2 of 23) L1MA5|LINE|L1 16277 NM_001292028 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 573-95 chr2 86439214 86439612 + 3 NA Intergenic L1MEh|LINE|L1 -1958 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 634-162 chr9 108301955 108302395 + 3 NA Intergenic Intergenic 553811 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 558-129 chr3 5320462 5320699 + 3 NA Intergenic Intergenic -70325 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 747-30 chr2 79752945 79753369 + 3 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) -103798 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 468-109 chr17 30415507 30415806 + 3 NA intron (NM_001304, intron 2 of 20) L1MB2|LINE|L1 35178 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 612-62 chr2 75411819 75412139 + 3 NA Intergenic L1MA8|LINE|L1 -112089 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 494-306 chr9 26095957 26096213 + 3 NA intron (NM_001004352, intron 3 of 6) HAL1M8|LINE|L1 29410 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 466-40 chr10 118601570 118601838 + 3 NA Intergenic Intergenic -6056 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 804-21 chr15 57793736 57794210 + 3 NA Intergenic Intergenic 87259 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 1193-8 chr20 31444456 31445308 + 3 NA intron (NM_153324, intron 1 of 1) L1ME3B|LINE|L1 4250 NR_126450 245936 Hs.122509 NM_153324 ENSG00000180424 DEFB123 DEFB-23|DEFB23|ESC42-RELD defensin beta 123 protein-coding 630-26 chr13 88575488 88575838 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 34834 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 294-487 chr9 21091856 21092051 + 3 NA Intergenic MER54B|LTR|ERVL -14011 NM_002176 3456 Hs.93177 NM_002176 ENSG00000171855 IFNB1 IFB|IFF|IFN-beta|IFNB interferon beta 1 protein-coding 445-266 chr8 35961010 35961202 + 3 NA Intergenic L1MEg|LINE|L1 -250786 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 489-198 chr4 173423428 173423689 + 3 NA intron (NM_001329597, intron 2 of 3) intron (NM_001329597, intron 2 of 3) -24442 NM_007281 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 340-54 chr10 77222123 77222252 + 3 NA intron (NM_001322838, intron 3 of 29) intron (NM_001322838, intron 3 of 29) 81356 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 352-570 chr9 122586620 122586772 + 3 NA Intergenic L1ME1|LINE|L1 -18219 NM_001004454 138881 Hs.632695 NM_001004454 ENSG00000171496 OR1L8 OR9-24 olfactory receptor family 1 subfamily L member 8 protein-coding 627-100 chr6 3553095 3553484 + 3 NA Intergenic L1MD2|LINE|L1 -96730 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 489-63 chr12 129375911 129376206 + 3 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 167457 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 379-384 chr9 105930987 105931148 + 3 NA Intergenic MIRb|SINE|MIR 236526 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 399-69 chr12 39909199 39909379 + 3 NA TTS (NR_135051) TTS (NR_135051) 196792 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 484-289 chr9 110801686 110801916 + 3 NA 3' UTR (NM_005592, exon 14 of 14) 3' UTR (NM_005592, exon 14 of 14) 73539 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 452-25 chr10 30405834 30406001 + 3 NA Intergenic L2a|LINE|L2 -28104 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 610-18 chr10 44017341 44017662 + 3 NA Intergenic L2b|LINE|L2 105099 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 301-115 chr14 45914227 45914349 + 3 NA Intergenic L1MA9|LINE|L1 -149871 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 259-47 chr10 57722254 57722386 + 3 NA Intergenic Intergenic -417761 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 381-236 chr22 35109820 35109987 + 3 NA Intergenic Intergenic 43745 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 297-196 chr2 5179648 5179820 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 511384 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 394-60 chr11 66931552 66931809 + 3 NA intron (NM_001040716, intron 3 of 22) L1ME4b|LINE|L1 2826 NR_036121 100423029 NR_036121 ENSG00000266423 MIR3163 - microRNA 3163 ncRNA 1738 chr12 133010196 133011271 + 3 NA exon (NM_001330513, exon 5 of 5) exon (NM_001330513, exon 5 of 5) 24366 NM_019591 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 498-287 chr9 32544365 32544696 + 3 NA intron (NM_001195622, intron 1 of 1) MIR|SINE|MIR -6614 NM_001349118 100129250 Hs.664395 NM_001349118 ENSG00000235453 SMIM27 C9orf133|TOPORS-AS1 small integral membrane protein 27 protein-coding 415-304 chr9 84015077 84015308 + 3 NA Intergenic HAL1ME|LINE|L1 34387 NM_001358291 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 622-48 chr19 38496508 38496881 + 3 NA intron (NM_001042723, intron 41 of 104) L2b|LINE|L2 62994 NM_000540 6261 Hs.466664 NM_000540 ENSG00000196218 RYR1 CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR ryanodine receptor 1 protein-coding 404-134 chr17 74685012 74685185 + 3 NA intron (NM_175738, intron 1 of 8) L1ME3Cz|LINE|L1 13967 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 394-106 chr14 72582684 72582836 + 3 NA Intergenic Intergenic 65940 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 437-121 chr2 12112328 12112507 + 3 NA intron (NR_110197, intron 3 of 3) intron (NR_110197, intron 3 of 3) -86713 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 350-361 chr4 102508923 102509079 + 3 NA intron (NM_001319226, intron 1 of 23) intron (NM_001319226, intron 1 of 23) -6515 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 580-177 chr7 22629466 22629861 + 3 NA Intergenic Intergenic 35870 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 673-43 chr18 1721348 1721660 + 3 NA Intergenic Intergenic -361875 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 657-87 chr7 4018058 4018397 + 3 NA intron (NM_152744, intron 17 of 44) intron (NM_152744, intron 17 of 44) -111458 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 464-10 chr1 194001276 194001533 + 3 NA Intergenic L1PA16|LINE|L1 696659 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 357-241 chr20 43421837 43422059 + 3 NA Intergenic L1M2c|LINE|L1 -35948 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 370-252 chr2 160069278 160069575 + 3 NA Intergenic MER4-int|LTR|ERV1 -6811 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 531-226 chr7 54974735 54974971 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -44164 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 832-35 chr5 29776687 29777217 + 3 NA Intergenic L1MCa|LINE|L1 -103608 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1232-3 chr2 175317888 175318579 + 3 NA Intergenic L1ME4a|LINE|L1 -136523 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 814-67 chr9 120939185 120939573 + 3 NA Intergenic LTR78|LTR|ERV1 -10206 NM_001190945 7185 Hs.531251 NM_005658 ENSG00000056558 TRAF1 EBI6|MGC:10353 TNF receptor associated factor 1 protein-coding 846-26 chr2 180026844 180027233 + 3 NA Intergenic L1MA2|LINE|L1 -19741 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 435-29 chr10 36559645 36559830 + 3 NA Intergenic Intergenic -566120 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 548-41 chr11 103566816 103567166 + 3 NA Intergenic Intergenic -282915 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 624-63 chr2 79173323 79173628 + 3 NA Intergenic Intergenic -13722 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 825-22 chr2 185103623 185103953 + 3 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat 63284 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 466-301 chrX 65128636 65128805 + 3 NA Intergenic L1MB8|LINE|L1 -93979 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 467-99 chr16 48655906 48656133 + 3 NA Intergenic MER74B|LTR|ERVL -45839 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 412-183 chr20 33255414 33255619 + 3 NA Intergenic L1M4|LINE|L1 19520 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 445-105 chr18 75398218 75398458 + 3 NA Intergenic L1MC4|LINE|L1 29365 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 445-85 chr16 10548664 10548864 + 3 NA intron (NM_001424, intron 1 of 4) intron (NM_001424, intron 1 of 4) -20566 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 406-123 chr18 78317474 78317725 + 3 NA Intergenic Intergenic -323872 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 495-20 chr1 241300720 241301001 + 3 NA intron (NM_001282778, intron 2 of 16) L1MC1|LINE|L1 54966 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 608-153 chr8 52951133 52951454 + 3 NA Intergenic MER34A1|LTR|ERV1 11385 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 416-59 chr10 120394445 120394670 + 3 NA Intergenic L2c|LINE|L2 -39334 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 1105-14 chr8 71179929 71180518 + 3 NA Intergenic Intergenic 176483 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 699-79 chr5 29962114 29962518 + 3 NA Intergenic LTR28C|LTR|ERV1 81756 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 507-89 chr14 87656014 87656204 + 3 NA promoter-TSS (NR_146551) promoter-TSS (NR_146551) -815 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 731-27 chr14 33645171 33645577 + 3 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -63563 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 533-130 chr3 27979274 27979550 + 3 NA Intergenic L1MD1|LINE|L1 -145276 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 389-301 chr5 146633939 146634214 + 3 NA intron (NM_181678, intron 8 of 10) MLT2B4|LTR|ERVL -117963 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 379-27 chr1 195877422 195877588 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR 211210 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 405-177 chr20 11795458 11795689 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 75142 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 417-17 chr1 189462759 189462932 + 3 NA Intergenic MIRc|SINE|MIR 1013165 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 562-7 chr1 165108596 165108792 + 3 NA Intergenic AluY|SINE|Alu 247547 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 509-150 chr3 68639133 68639314 + 3 NA Intergenic Intergenic 138586 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 478-309 chr9 79195710 79196004 + 3 NA Intergenic Intergenic -50191 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 462-285 chr8 102683202 102683382 + 3 NA intron (NR_160672, intron 3 of 4) L1ME3D|LINE|L1 27044 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 428-130 chr2 95234284 95234531 + 3 NA Intergenic MER21A|LTR|ERVL -40042 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 541-94 chr18 3721262 3721626 + 3 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 117707 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 468-94 chr15 88954825 88955024 + 3 NA Intergenic Intergenic -41545 NM_001114614 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 387-266 chr5 1310573 1310840 + 3 NA Intergenic L1M5|LINE|L1 -1329 NR_039662 100616235 NR_039662 ENSG00000263670 MIR4457 mir-4457 microRNA 4457 ncRNA 1091-2 chr11 50592415 50593094 + 3 NA Intergenic ALR/Alpha|Satellite|centr 183607 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 352-559 chr9 29939284 29939470 + 3 NA Intergenic Intergenic 469077 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 1256-7 chr4 55282713 55283382 + 3 NA Intergenic L1MA9|LINE|L1 -63195 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 334-209 chr17 59531246 59531468 + 3 NA Intergenic L2b|LINE|L2 -4500 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 427-133 chr2 226291776 226291974 + 3 NA Intergenic MER11A|LTR|ERVK 149081 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 513-284 chr8 108056229 108056491 + 3 NA intron (NM_178565, intron 2 of 5) AluJb|SINE|Alu 25579 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 741-42 chr3 146660553 146661046 + 3 NA Intergenic L1M2|LINE|L1 -54583 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 454-46 chr10 128562803 128563035 + 3 NA Intergenic Intergenic 276969 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 910-28 chr3 94196395 94196974 + 3 NA Intergenic Intergenic 133623 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 276-359 chr5 7667635 7667794 + 3 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 183419 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 713-12 chr10 75344103 75344568 + 3 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) 47952 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 348-225 chr2 67986717 67986922 + 3 NA Intergenic Intergenic 76185 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 603-11 chr1 247051511 247051721 + 3 NA intron (NM_033213, intron 1 of 3) L1PBa|LINE|L1 27195 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 313-124 chr13 69191828 69192020 + 3 NA Intergenic Intergenic -30422 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 640-113 chr6 43953776 43954111 + 3 NA Intergenic Intergenic -46642 NR_160955 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 751-60 chr5 53296381 53296849 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie -184014 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 619-49 chr14 72108339 72108661 + 3 NA intron (NM_001370288, intron 2 of 16) HAL1M8|LINE|L1 174973 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 439-124 chr2 26536751 26536947 + 3 NA intron (NM_194248, intron 2 of 46) L1MEh|LINE|L1 21907 NM_001287489 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 331-357 chr3 89909190 89909341 + 3 NA Intergenic Intergenic 801644 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 551-15 chr10 48560990 48561262 + 3 NA intron (NR_144642, intron 2 of 9) L1ME1|LINE|L1 43947 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 609-84 chr3 196880093 196880509 + 3 NA intron (NM_152699, intron 1 of 9) FLAM_A|SINE|Alu 12381 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 389-208 chr20 52525845 52526054 + 3 NA Intergenic Intergenic -94889 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 339-20 chr1 88380413 88380566 + 3 NA Intergenic Intergenic -303655 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 419-196 chr3 162032795 162032964 + 3 NA Intergenic LTR81AB|LTR|Gypsy 536071 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 331-106 chr12 8645910 8646103 + 3 NA TTS (NM_001297710) TTS (NM_001297710) 16820 NR_123733 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 490-102 chr16 12745262 12745552 + 3 NA intron (NM_018340, intron 2 of 3) L1PA14|LINE|L1 25086 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 406-143 chr2 54727620 54727855 + 3 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 2725 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 238-198 chr2 228867863 228868004 + 3 NA Intergenic L1MEc|LINE|L1 -256538 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 532-170 chr3 115011914 115012233 + 3 NA intron (NM_015642, intron 1 of 9) L1MA3|LINE|L1 59341 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 507-209 chr5 147204821 147205141 + 3 NA intron (NR_147190, intron 1 of 3) MSTD-int|LTR|ERVL-MaLR 29878 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 396-91 chr12 69247070 69247279 + 3 NA intron (NM_007007, intron 1 of 9) MER106B|DNA|hAT-Charlie 7605 NM_001300947 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 478-85 chr14 72170423 72170768 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 237068 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 548-248 chr9 29387991 29388361 + 3 NA Intergenic L1M4|LINE|L1 -174575 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 372-367 chr4 80824798 80825049 + 3 NA intron (NM_001206997, intron 4 of 6) L1MB3|LINE|L1 -205785 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 270-379 chr8 67362679 67362788 + 3 NA intron (NR_136223, intron 2 of 2) intron (NR_136223, intron 2 of 2) 18899 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 797-59 chr8 114160917 114161344 + 3 NA Intergenic Intergenic -724191 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 679-115 chr9 72393298 72393601 + 3 NA Intergenic L1ME3B|LINE|L1 -28241 NM_001102420 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 327-130 chr12 125903753 125903957 + 3 NA Intergenic MLT2B4|LTR|ERVL 79519 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 691-62 chr5 8341366 8341791 + 3 NA intron (NR_039984, intron 3 of 5) L1PA16|LINE|L1 115986 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 262-82 chr11 81369834 81369948 + 3 NA Intergenic MIRc|SINE|MIR 520945 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 525-99 chr19 19235759 19235948 + 3 NA intron (NM_004386, intron 10 of 14) AluJb|SINE|Alu 23895 NM_004386 1463 Hs.169047 NM_004386 ENSG00000130287 NCAN CSPG3 neurocan protein-coding 506-100 chr16 9916693 9917039 + 3 NA intron (NM_001134408, intron 3 of 13) intron (NM_001134408, intron 3 of 13) 265201 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 664-98 chr6 120585267 120585677 + 3 NA Intergenic Intergenic 570293 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 414-36 chr10 111104274 111104524 + 3 NA Intergenic AluSc|SINE|Alu -9892 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 728-19 chr12 18605253 18605652 + 3 NA intron (NM_001288774, intron 30 of 32) L1PBa1|LINE|L1 132057 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 428-288 chr8 43741907 43742064 + 3 NA Intergenic ALR/Alpha|Satellite|centr 449543 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 866-18 chr16 3570871 3571355 + 3 NA intron (NR_075083, intron 1 of 20) L1M5|LINE|L1 6290 NR_075083 197358 Hs.592091 NM_178844 ENSG00000167984 NLRC3 CLR16.2|NOD3 NLR family CARD domain containing 3 protein-coding 759-18 chr13 34021185 34021635 + 3 NA Intergenic Intergenic 203261 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 498-43 chr10 127484781 127484998 + 3 NA Intergenic Intergenic -64460 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 452-150 chr20 4239168 4239334 + 3 NA intron (NM_000678, intron 1 of 1) intron (NM_000678, intron 1 of 1) 10036 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 370-140 chr14 40738439 40738607 + 3 NA Intergenic Intergenic -216188 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 383-163 chr18 29425693 29425949 + 3 NA Intergenic Intergenic -873089 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 452-57 chr12 46846073 46846255 + 3 NA Intergenic L1M4|LINE|L1 -20167 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 428-323 chr9 135731013 135731240 + 3 NA intron (NM_020822, intron 2 of 30) L1MC4|LINE|L1 28941 NM_020822 57582 Hs.104950 NM_020822 ENSG00000107147 KCNT1 EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2 potassium sodium-activated channel subfamily T member 1 protein-coding 511-137 chr2 188755641 188755918 + 3 NA intron (NR_161166, intron 1 of 1) L1P4e|LINE|L1 34344 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 523-230 chr5 143668208 143668399 + 3 NA Intergenic MER45B|DNA|hAT-Tip100 -11557 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 437-178 chr3 135595102 135595316 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -370519 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 925-9 chr11 104748217 104748743 + 3 NA Intergenic Intergenic -139178 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 367-471 chr8 144922520 144922726 + 3 NA Intergenic LTR26|LTR|ERV1 -20446 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 456-11 chr1 99992259 99992554 + 3 NA intron (NM_001271685, intron 1 of 7) L1ME1|LINE|L1 21889 NM_001271685 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 758-71 chr7 48028127 48028703 + 3 NA intron (NM_001030019, intron 1 of 9) intron (NM_001030019, intron 1 of 9) 692 NM_152782 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 530-104 chr18 37650722 37650952 + 3 NA Intergenic L1ME3B|LINE|L1 -6298 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 847-8 chr11 82391517 82391999 + 3 NA intron (NR_120571, intron 1 of 7) L1MEd|LINE|L1 12155 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 1059 chr10 36311792 36312375 + 3 NA Intergenic Intergenic 533781 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 305-545 chr8 120910746 120910886 + 3 NA Intergenic Intergenic -98770 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 356-92 chr11 100123063 100123312 + 3 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -564101 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 647-73 chr4 52295775 52296185 + 3 NA Intergenic Intergenic 244676 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 474-52 chr11 106926681 106926846 + 3 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 91713 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 542-103 chr2 123580864 123581078 + 3 NA Intergenic Intergenic 444203 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1199-11 chr20 12683634 12684263 + 3 NA Intergenic Intergenic 253015 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 616-11 chr1 240302448 240302815 + 3 NA intron (NM_020066, intron 8 of 17) L1M5|LINE|L1 210748 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 447-307 chrX 152807761 152808011 + 3 NA Intergenic Intergenic 22871 NM_004344 1069 Hs.82794 NM_004344 ENSG00000147400 CETN2 CALT|CEN2 centrin 2 protein-coding 493-188 chr22 27344006 27344191 + 3 NA Intergenic L1ME1|LINE|L1 33447 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 479-16 chr10 10459806 10460215 + 3 NA intron (NR_120637, intron 1 of 3) AluJr|SINE|Alu 2339 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 553-107 chr2 35319183 35319377 + 3 NA Intergenic L1MB5|LINE|L1 -152125 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 397-219 chr4 31953233 31953407 + 3 NA Intergenic Intergenic -44059 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 284-252 chr3 75569 75734 + 3 NA Intergenic Intergenic 63900 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 302-12 chr1 111002709 111002863 + 3 NA Intergenic L1M1|LINE|L1 -38842 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 917 chr1 163868543 163869035 + 3 NA Intergenic L1MA8|LINE|L1 -445598 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 505-75 chr13 87945493 87945713 + 3 NA Intergenic Intergenic -135083 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 347-220 chr2 64833134 64833366 + 3 NA Intergenic MIR|SINE|MIR 30381 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 381-208 chr2 150062395 150062609 + 3 NA Intergenic MIR|SINE|MIR 194505 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 312-57 chr10 105198702 105198876 + 3 NA intron (NM_014978, intron 14 of 26) intron (NM_014978, intron 14 of 26) -532573 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 446-302 chr8 77624182 77624333 + 3 NA Intergenic L1MB1|LINE|L1 173560 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 603-14 chr10 76283366 76283779 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 500811 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 456-240 chr5 15051540 15051848 + 3 NA Intergenic L1MA5|LINE|L1 -179916 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 1029-21 chr9 21599493 21600042 + 3 NA Intergenic Intergenic -39969 NR_027054 554202 Hs.458096 NR_027054 MIR31HG LncHIFCAR|hsa-lnc-31 MIR31 host gene ncRNA 330-73 chr10 114290873 114291031 + 3 NA intron (NM_001272046, intron 13 of 13) L2a|LINE|L2 51338 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 463-159 chr2 237908829 237909054 + 3 NA intron (NM_001308353, intron 3 of 3) L1MCc|LINE|L1 49318 NM_005855 10267 Hs.471783 NM_005855 ENSG00000132329 RAMP1 - receptor activity modifying protein 1 protein-coding 774-47 chr2 160300175 160300571 + 3 NA intron (NM_002897, intron 6 of 13) intron (NM_002897, intron 6 of 13) -28478 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 442-236 chr5 110011626 110011800 + 3 NA Intergenic L1ME3|LINE|L1 128531 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 282-248 chr2 215733526 215733711 + 3 NA intron (NR_037195, intron 5 of 9) L1MEd|LINE|L1 15575 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 278-116 chr14 63005166 63005344 + 3 NA intron (NM_139318, intron 3 of 10) intron (NM_139318, intron 3 of 10) 40203 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 832-11 chr2 45284812 45285349 + 3 NA Intergenic Intergenic -30139 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 585-139 chr6 80703469 80703839 + 3 NA Intergenic Intergenic 596983 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 302-486 chr9 87692233 87692457 + 3 NA intron (NM_004938, intron 21 of 25) L1MA4A|LINE|L1 -33774 NM_001257971 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 758-19 chr13 62972277 62972639 + 3 NA Intergenic Intergenic -165099 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 504-24 chr10 55958115 55958386 + 3 NA Intergenic L1ME3A|LINE|L1 -330308 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 399-108 chr16 52329302 52329510 + 3 NA Intergenic L1MEc|LINE|L1 70842 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 410-175 chr21 32160525 32160737 + 3 NA Intergenic MER4A1|LTR|ERV1 -74336 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 502-41 chr11 4118860 4119186 + 3 NA intron (NM_001318064, intron 7 of 17) intron (NM_001318064, intron 7 of 17) 2945 NM_001330193 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 999-10 chr20 17738985 17739439 + 3 NA Intergenic Intergenic 39264 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 560-117 chr3 134525187 134525531 + 3 NA intron (NR_148353, intron 3 of 12) L1PA8A|LINE|L1 39186 NM_001353111 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 1063-9 chr14 20131623 20132044 + 3 NA Intergenic L1PA16|LINE|L1 -11903 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 416-91 chr12 57039755 57039933 + 3 NA intron (NM_005379, intron 14 of 27) MER5A|DNA|hAT-Charlie 10285 NM_005379 4640 Hs.5394 NM_005379 ENSG00000166866 MYO1A BBMI|DFNA48|MIHC|MYHL myosin IA protein-coding 546-181 chr5 11923793 11924085 + 3 NA Intergenic Intergenic -19493 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 574-139 chr5 58979874 58980085 + 3 NA intron (NM_006203, intron 11 of 14) intron (NM_006203, intron 11 of 14) 19919 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 481-276 chr7 37607902 37608142 + 3 NA Intergenic L1MEc|LINE|L1 -75744 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 534-225 chr6 139610759 139610960 + 3 NA Intergenic Intergenic -136263 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 356-177 chr16 17491872 17492063 + 3 NA Intergenic MIR|SINE|MIR -21007 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 474-28 chr10 37927958 37928215 + 3 NA Intergenic Intergenic 47894 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 474-62 chr12 30540415 30540595 + 3 NA Intergenic AluY|SINE|Alu 136739 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 1015-13 chr6 14378390 14378805 + 3 NA Intergenic MER34C_|LTR|ERV1 -93143 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 598-54 chr17 21091336 21091659 + 3 NA TTS (NR_110895) TTS (NR_110895) 15941 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 403-149 chr2 22527400 22527661 + 3 NA Intergenic L1MEd|LINE|L1 -8949 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 563-148 chr5 8515420 8515710 + 3 NA Intergenic Intergenic 54640 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 378-167 chr17 5687422 5687589 + 3 NA Intergenic Intergenic -84729 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 454-25 chr10 36323310 36323487 + 3 NA Intergenic L1MEc|LINE|L1 545096 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 298-384 chr5 162222897 162223059 + 3 NA Intergenic L1MC3|LINE|L1 155336 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 352-104 chr12 48474032 48474297 + 3 NA Intergenic Intergenic 1499 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 537-81 chr16 76607699 76607959 + 3 NA Intergenic AluSq|SINE|Alu -27169 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 464-241 chr7 39077259 39077544 + 3 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -63834 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 783-70 chr7 4322353 4322702 + 3 NA Intergenic L1MB7|LINE|L1 -187690 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 605-3 chr1 68945332 68945595 + 3 NA Intergenic Intergenic -110435 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 453-161 chr3 69498666 69498903 + 3 NA Intergenic MIRb|SINE|MIR -112696 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 389-302 chr5 151892831 151893047 + 3 NA intron (NM_000171, intron 1 of 8) intron (NM_000171, intron 1 of 8) 31912 NM_001146040 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 484-31 chr10 53288721 53288934 + 3 NA Intergenic Intergenic -517127 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 209-187 chr3 307927 308047 + 3 NA intron (NM_001253387, intron 2 of 26) intron (NM_001253387, intron 2 of 26) -11696 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 443-165 chr2 215853469 215853690 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -10043 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 474-266 chr7 44773615 44773906 + 3 NA Intergenic L1MC4|LINE|L1 17572 NM_174929 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 499-221 chr6 40151383 40151577 + 3 NA Intergenic Intergenic 204526 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 796-60 chr9 96191394 96191869 + 3 NA Intergenic Intergenic -54832 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 332-146 chr13 95873574 95873717 + 3 NA intron (NM_020121, intron 29 of 38) MER54B|LTR|ERVL 179756 NM_020121 55757 Hs.193226 NM_020121 ENSG00000102595 UGGT2 HUGT2|UGCGL2|UGT2 UDP-glucose glycoprotein glucosyltransferase 2 protein-coding 667-89 chr5 117581656 117582099 + 3 NA Intergenic Intergenic -148484 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 547-122 chr20 55876450 55876822 + 3 NA Intergenic L3|LINE|CR1 128883 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 250-266 chr3 2170507 2170615 + 3 NA intron (NM_175607, intron 2 of 24) L1MEd|LINE|L1 -26320 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 391-93 chr14 25706414 25706618 + 3 NA Intergenic L1ME2|LINE|L1 -656219 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 458-113 chr19 37390641 37390923 + 3 NA 3' UTR (NM_032453, exon 5 of 5) 3' UTR (NM_032453, exon 5 of 5) 19683 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 407-170 chr20 43797106 43797258 + 3 NA Intergenic Intergenic -70180 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 320-540 chr8 66998424 66998585 + 3 NA intron (NM_001364910, intron 5 of 7) L1M5|LINE|L1 30047 NM_001348563 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 879-36 chrX 151647845 151648403 + 3 NA intron (NM_173493, intron 8 of 15) intron (NM_173493, intron 8 of 15) -47134 NM_024082 79057 Hs.209253 NM_024082 ENSG00000130032 PRRG3 PRGP3|TMG3 proline rich and Gla domain 3 protein-coding 448-170 chr3 178582631 178582828 + 3 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 23879 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 403-173 chr2 230701104 230701321 + 3 NA promoter-TSS (NR_040038) promoter-TSS (NR_040038) -683 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 409-193 chr22 48695391 48695616 + 3 NA intron (NM_001082967, intron 2 of 3) intron (NM_001082967, intron 2 of 3) -84792 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 349-257 chr2 81516562 81516707 + 3 NA Intergenic L1MC4a|LINE|L1 -49688 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 452-293 chr9 93709205 93709420 + 3 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -110045 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 636-94 chr3 76090536 76090963 + 3 NA Intergenic (GAACG)n|Simple_repeat|Simple_repeat -305200 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 769-49 chr5 26688794 26689275 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 349552 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1082-11 chr2 163830378 163831144 + 3 NA Intergenic L1MA1|LINE|L1 -94753 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 396-245 chr4 32819371 32819566 + 3 NA Intergenic L1MEc|LINE|L1 468430 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 904-36 chr7 31011541 31012058 + 3 NA Intergenic HAL1|LINE|L1 -40509 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 234-298 chr5 10157682 10157787 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR 92154 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 553-228 chr8 52880728 52881036 + 3 NA Intergenic LTR57-int|LTR|ERVL -59026 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 414-233 chr4 61845692 61845855 + 3 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 315992 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 662-4 chr1 106546346 106546728 + 3 NA Intergenic L1PA6|LINE|L1 -271702 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 806-22 chr16 73934166 73934624 + 3 NA Intergenic L1PA11|LINE|L1 281126 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 508-125 chr2 230107054 230107442 + 3 NA Intergenic L1M1|LINE|L1 -38324 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 282-90 chr12 21321337 21321509 + 3 NA intron (NM_021094, intron 1 of 13) intron (NM_021094, intron 1 of 13) 13494 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 480-3 chr1 40501794 40502009 + 3 NA Intergenic L2|LINE|L2 -6818 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 531-176 chr4 54519179 54519370 + 3 NA Intergenic L1ME4a|LINE|L1 87857 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 610-111 chr3 28378176 28378528 + 3 NA intron (NM_001324170, intron 1 of 6) intron (NM_001324170, intron 1 of 6) 29203 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 1043-2 chr12 34553253 34553748 + 3 NA Intergenic ALR/Alpha|Satellite|centr 531004 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 623-128 chr8 80768569 80768883 + 3 NA intron (NM_001033723, intron 2 of 8) MER63A|DNA|hAT-Blackjack 105742 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 684-118 chr8 107164519 107164857 + 3 NA Intergenic Intergenic 171827 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 482-244 chr7 36831064 36831284 + 3 NA Intergenic Intergenic 88258 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 546-101 chr2 34222279 34222488 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 155157 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 549-180 chr6 66665613 66665866 + 3 NA Intergenic Intergenic 877860 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 493-145 chr2 67774870 67775070 + 3 NA Intergenic MER3|DNA|hAT-Charlie 50592 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 830-33 chr3 44189866 44190283 + 3 NA Intergenic Intergenic -51812 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 944-15 chr2 81229042 81229671 + 3 NA Intergenic Intergenic 237590 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 1283-4 chr3 178697786 178698589 + 3 NA intron (NM_001278911, intron 1 of 4) L1PA13|LINE|L1 139337 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 903-21 chr2 77225549 77226061 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 239840 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 284-140 chr15 87484142 87484295 + 3 NA Intergenic MIR3|SINE|MIR -92711 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 697-11 chr11 43184750 43185135 + 3 NA Intergenic Intergenic 84427 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 401-112 chr15 97074111 97074273 + 3 NA Intergenic Intergenic 290757 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 612-66 chr2 114511845 114512216 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 50453 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 840-14 chr14 59579629 59580140 + 3 NA Intergenic L1ME4a|LINE|L1 -3072 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 357-221 chr2 156901779 156901974 + 3 NA Intergenic L1MEi|LINE|L1 -355829 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 441-179 chr4 45252470 45252684 + 3 NA Intergenic Intergenic -525943 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 413-319 chr9 4255790 4256019 + 3 NA intron (NM_001042413, intron 2 of 10) L1MC1|LINE|L1 44164 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 523-219 chr5 67253570 67253808 + 3 NA Intergenic Intergenic -56890 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 472-15 chr1 97054874 97055156 + 3 NA Intergenic L1ME1|LINE|L1 -40908 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 697-41 chr2 7347262 7347618 + 3 NA Intergenic Intergenic -73821 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 970 chr10 17568154 17568805 + 3 NA Intergenic AluSx|SINE|Alu 48895 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 532-289 chrX 47978393 47978594 + 3 NA intron (NM_006962, intron 6 of 6) intron (NM_006962, intron 6 of 6) 25496 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 327-277 chr2 166029504 166029781 + 3 NA intron (NR_110598, intron 3 of 3) intron (NR_110598, intron 3 of 3) -51889 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 605-23 chr13 53287272 53287551 + 3 NA Intergenic Intergenic -135511 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 509-123 chr2 146248103 146248387 + 3 NA Intergenic HAL1|LINE|L1 -338812 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 356-365 chr4 75432495 75432766 + 3 NA Intergenic LTR33B|LTR|ERVL 76666 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 343-94 chr12 12285548 12285731 + 3 NA Intergenic Intergenic -18595 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 493-76 chr14 30038820 30039154 + 3 NA Intergenic Intergenic -111140 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 368-232 chr2 80052250 80052441 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -185762 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 373-7 chr1 42454114 42454276 + 3 NA intron (NM_032257, intron 1 of 7) L2b|LINE|L2 1827 NM_032257 84217 Hs.294009 NM_032257 ENSG00000066185 ZMYND12 - zinc finger MYND-type containing 12 protein-coding 389-50 chr10 129438395 129438585 + 3 NA Intergenic Intergenic -28751 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 419-206 chr4 83797754 83797979 + 3 NA Intergenic Intergenic 261758 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 320-292 chr2 209857705 209857840 + 3 NA intron (NM_032504, intron 22 of 63) L1ME3D|LINE|L1 85779 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 613-65 chr2 145373740 145374054 + 3 NA Intergenic Intergenic 705930 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 668-120 chrX 145423291 145423602 + 3 NA Intergenic L1PBa|LINE|L1 175943 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 501-41 chr12 2080861 2081101 + 3 NA intron (NM_199460, intron 1 of 49).2 L1MEd|LINE|L1 27696 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 524-223 chr6 98555442 98555684 + 3 NA Intergenic L1MC5|LINE|L1 276137 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 425-61 chr11 111109008 111109214 + 3 NA Intergenic L2|LINE|L2 -11793 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 438-143 chr20 13535753 13536050 + 3 NA intron (NM_001323602, intron 4 of 9) intron (NM_001323602, intron 4 of 9) 103031 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 584-162 chr7 53544218 53544549 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity 267548 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 825-56 chr8 135067148 135067535 + 3 NA Intergenic HAL1|LINE|L1 -166790 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 512-183 chr4 23815200 23815390 + 3 NA intron (NM_001330752, intron 8 of 13) intron (NM_001330752, intron 8 of 13) 65997 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 530-89 chr16 25320956 25321200 + 3 NA Intergenic L1MEi|LINE|L1 -63233 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 978-4 chr1 247193453 247193875 + 3 NA Intergenic L1MB2|LINE|L1 8396 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 563-116 chr22 39798505 39798880 + 3 NA intron (NM_152512, intron 5 of 6) L1M2|LINE|L1 95068 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 518-289 chr8 11400384 11400785 + 3 NA intron (NR_026814, intron 2 of 6) MER31-int|LTR|ERV1 32182 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 346-537 chrUn_KI270512v1 21676 21843 + 3 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 860-47 chr9 111782724 111783365 + 3 NA intron (NR_109816, intron 3 of 26) L2a|LINE|L2 449 NM_173521 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 454-263 chr5 119863191 119863401 + 3 NA Intergenic MER90a|LTR|ERV1 233737 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 978-14 chr3 94248132 94248677 + 3 NA Intergenic Intergenic 185343 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 296-337 chr4 61046435 61046642 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -97118 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 631-67 chr2 71729633 71730029 + 3 NA Intergenic Intergenic 263132 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 400-246 chr4 54906203 54906452 + 3 NA Intergenic L1MB7|LINE|L1 219268 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 543-248 chr8 121063285 121063624 + 3 NA Intergenic LTR16E2|LTR|ERVL -251408 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 866-5 chr1 195362365 195362884 + 3 NA Intergenic L1MA1|LINE|L1 726091 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 410-9 chr1 104998826 104998982 + 3 NA Intergenic Intergenic 620031 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 494-51 chr12 48643050 48643308 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 11339 NR_002968 677815 Hs.689717 NR_002968 ENSG00000221491 SNORA2C ACA34|MIR1291|SNORA34 small nucleolar RNA, H/ACA box 2C snoRNA 533-124 chr21 31572203 31572402 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 13069 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 511-225 chr6 45390606 45390918 + 3 NA intron (NM_001015051, intron 2 of 7) A-rich|Low_complexity|Low_complexity -12828 NM_001350324 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 336-388 chr4 17299224 17299367 + 3 NA Intergenic Intergenic 21587 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 486-264 chr6 133030965 133031177 + 3 NA Intergenic L1M5|LINE|L1 -57009 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 403-186 chr22 28176840 28177067 + 3 NA intron (NM_001145418, intron 5 of 22) L1MC2|LINE|L1 -256341 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 892-5 chr10 48211046 48211493 + 3 NA intron (NM_001018071, intron 13 of 28) intron (NM_001018071, intron 13 of 28) -36126 NM_001042512 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 870-27 chr5 20408449 20408849 + 3 NA intron (NM_001349558, intron 1 of 15) L1MB2|LINE|L1 103098 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 331-332 chr22 40144118 40144259 + 3 NA intron (NM_001024843, intron 3 of 23) L1ME3|LINE|L1 -33737 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 476-109 chr17 32134338 32134608 + 3 NA Intergenic Intergenic -7981 NR_110083 55288 Hs.655325 NM_018307 ENSG00000126858 RHOT1 ARHT1|MIRO-1|MIRO1 ras homolog family member T1 protein-coding 904-10 chr12 84704302 84704797 + 3 NA Intergenic Intergenic 208250 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 511-25 chr10 88001805 88002112 + 3 NA Intergenic Intergenic 138333 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 420-268 chr7 54196480 54196704 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -134105 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 517-190 chr4 41852040 41852295 + 3 NA Intergenic Intergenic 30444 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 370-98 chr11 100238023 100238213 + 3 NA intron (NM_001243270, intron 15 of 23) intron (NM_001243270, intron 15 of 23) -449170 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 637-104 chr6 154661994 154662424 + 3 NA Intergenic Intergenic -71169 NM_001286199 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 387-6 chr1 88584162 88584344 + 3 NA intron (NR_110682, intron 1 of 3) L1MA3|LINE|L1 -99891 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 477 chr1 14804510 14804696 + 3 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -119526 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 515-7 chr1 79525614 79525931 + 3 NA Intergenic MIRb|SINE|MIR -519042 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 632-34 chr16 6926696 6927025 + 3 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 153051 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 266-125 chr15 27110662 27110829 + 3 NA intron (NM_001270873, intron 3 of 5) L1MCa|LINE|L1 50574 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 575-12 chr1 188461081 188461475 + 3 NA Intergenic HSMAR1|DNA|TcMar-Mariner 1017650 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 754-58 chr4 56807993 56808380 + 3 NA Intergenic MIRb|SINE|MIR 13287 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 325-528 chr8 20050175 20050390 + 3 NA Intergenic MIR|SINE|MIR 111029 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 1554-6 chr22 36956461 36957343 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -8346 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 407-171 chr20 53036424 53036702 + 3 NA intron (NM_173485, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 64205 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 635-120 chr8 139122916 139123339 + 3 NA Intergenic Intergenic -209086 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 400-126 chr17 41141863 41142080 + 3 NA intron (NM_001277332, intron 2 of 5) LTR38A1|LTR|ERV1 -1484 NM_030976 81871 Hs.307014 NM_030976 ENSG00000198090 KRTAP4-6 KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 keratin associated protein 4-6 protein-coding 427-236 chr6 170183913 170184172 + 3 NA Intergenic Intergenic 23400 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 307-498 chr8 137294031 137294199 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 119473 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 539-126 chr2 156792470 156792658 + 3 NA Intergenic Intergenic 356185 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 555-7 chr1 215308047 215308311 + 3 NA Intergenic L2a|LINE|L2 225442 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 902-22 chr2 207385960 207386478 + 3 NA Intergenic MLT2C1|LTR|ERVL -116795 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 458-231 chr7 15312027 15312313 + 3 NA intron (NM_001004320, intron 12 of 12) L1MEg|LINE|L1 249845 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 545-162 chr4 73975752 73975960 + 3 NA Intergenic L1M2|LINE|L1 6171 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 865-44 chr8 112057958 112058428 + 3 NA Intergenic L1PA15|LINE|L1 -585300 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 211-3 chr1 37858445 37858575 + 3 NA intron (NM_005955, intron 1 of 10) intron (NM_005955, intron 1 of 10) 1082 NM_005955 4520 Hs.471991 NM_005955 ENSG00000188786 MTF1 MTF-1|ZRF metal regulatory transcription factor 1 protein-coding 514-219 chr5 29465547 29465791 + 3 NA Intergenic Intergenic -69693 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 512-240 chr6 113286256 113286550 + 3 NA Intergenic L1MEc|LINE|L1 147044 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 413-11 chr1 92220559 92220814 + 3 NA intron (NM_001012425, intron 1 of 5) L1MC3|LINE|L1 2771 NM_001012425 388649 Hs.558823 NM_001012425 ENSG00000203910 C1orf146 - chromosome 1 open reading frame 146 protein-coding 481-262 chr6 40217304 40217493 + 3 NA Intergenic Intergenic 138608 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 987-13 chr5 141722729 141723171 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -40720 NM_022481 64411 Hs.726187 NM_022481 ENSG00000120318 ARAP3 CENTD3|DRAG1 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3 protein-coding 436-266 chr6 55363286 55363457 + 3 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 35902 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 442-86 chr14 82531034 82531199 + 3 NA Intergenic Intergenic -111516 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 484-270 chr8 119341702 119342001 + 3 NA Intergenic L1MC1|LINE|L1 16680 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 428-86 chr16 72651900 72652185 + 3 NA intron (NR_159372, intron 1 of 7) L1MEb|LINE|L1 12928 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 253-95 chr12 14579516 14579686 + 3 NA intron (NR_120465, intron 2 of 5) AluSx1|SINE|Alu -11718 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 372-475 chr8 48810251 48810458 + 3 NA Intergenic Intergenic -75043 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 484-76 chr15 80537370 80537697 + 3 NA intron (NM_014862, intron 8 of 18) intron (NM_014862, intron 8 of 18) 25411 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 452-236 chr6 113509924 113510225 + 3 NA Intergenic LTR78B|LTR|ERV1 -76627 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 410-62 chr12 2253578 2253850 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -16062 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 392-299 chr7 24413979 24414173 + 3 NA Intergenic HAL1|LINE|L1 129886 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 470-108 chr19 24344349 24344522 + 3 NA Intergenic ALR/Alpha|Satellite|centr -180988 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 449-233 chr6 45331461 45331690 + 3 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 3245 NM_001024630 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 436-122 chr19 53166127 53166420 + 3 NA exon (NM_001353459, exon 4 of 4) exon (NM_001353459, exon 4 of 4) -7213 NM_001172674 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 493-134 chr2 22969146 22969401 + 3 NA Intergenic Intergenic -415906 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 917-21 chr5 120219828 120220481 + 3 NA Intergenic Intergenic -244124 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 363-246 chr2 219307297 219307440 + 3 NA intron (NM_001199764, intron 3 of 22) intron (NM_001199764, intron 3 of 22) 1602 NM_001199764 5798 Hs.89655 NM_002846 ENSG00000054356 PTPRN IA-2|IA-2/PTP|IA2|ICA512|R-PTP-N protein tyrosine phosphatase receptor type N protein-coding 751-56 chr5 10097831 10098265 + 3 NA Intergenic L1M6|LINE|L1 151840 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 474-252 chr6 50557735 50557994 + 3 NA Intergenic MIR|SINE|MIR -155680 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 548-140 chr22 47472826 47473129 + 3 NA intron (NR_109967, intron 1 of 2) MLT1A1-int|LTR|ERVL-MaLR 14134 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 761-55 chr5 45965787 45966253 + 3 NA Intergenic ALR/Alpha|Satellite|centr -269640 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 537-90 chr18 21734864 21735060 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -6367 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 460-221 chr4 64720855 64721018 + 3 NA Intergenic Intergenic 283564 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 534-21 chr1 238178610 238178798 + 3 NA Intergenic MER84-int|LTR|ERV1 -287782 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 810-48 chr6 122749331 122749866 + 3 NA intron (NM_001319042, intron 1 of 3) Zaphod|DNA|hAT-Tip100 397 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 397-241 chr5 7461311 7461462 + 3 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 65248 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 517-176 chr3 68222860 68223175 + 3 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 218770 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 440-280 chrX 126797373 126797595 + 3 NA Intergenic Intergenic -22245 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 657-5 chr1 92387878 92388231 + 3 NA 3' UTR (NM_024813, exon 13 of 13) 3' UTR (NM_024813, exon 13 of 13) 88995 NM_024813 79871 Hs.444421 NM_024813 ENSG00000122484 RPAP2 C1orf82|Rtr1 RNA polymerase II associated protein 2 protein-coding 442-26 chr10 58546177 58546437 + 3 NA intron (NM_001080512, intron 1 of 20) MER102c|DNA|hAT-Charlie 33435 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 386-336 chr7 125585504 125585706 + 3 NA Intergenic Intergenic -321314 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 225-90 chr14 64755468 64755554 + 3 NA intron (NM_001024858, intron 31 of 34) Charlie15b|DNA|hAT-Charlie 30175 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 297-314 chr4 17375223 17375435 + 3 NA Intergenic Intergenic -54447 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 478-209 chr4 64290598 64290771 + 3 NA intron (NM_001363796, intron 8 of 11) intron (NM_001363796, intron 8 of 11) 118766 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 450-271 chr7 5018715 5018909 + 3 NA Intergenic AluSx1|SINE|Alu -27048 NM_021163 57786 Hs.396178 NM_021163 ENSG00000146587 RBAK ZNF769 RB associated KRAB zinc finger protein-coding 764-45 chr22 22997920 22998259 + 3 NA Intergenic L1M2|LINE|L1 -72430 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 1032-4 chr11 106453863 106454380 + 3 NA Intergenic L1MB7|LINE|L1 202714 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 1183-6 chr20 31183371 31184032 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -73963 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 356-408 chr5 115116285 115116486 + 3 NA Intergenic LTR33|LTR|ERVL 53523 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 1173-14 chr7 7816094 7816866 + 3 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -97873 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 935-18 chr2 4094855 4095406 + 3 NA Intergenic MIRc|SINE|MIR 120969 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 519-94 chr2 12404206 12404391 + 3 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 205168 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 352-465 chr6 89913705 89913923 + 3 NA Intergenic L1MA4A|LINE|L1 19345 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 588-56 chr18 3954220 3954448 + 3 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -8019 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 556-174 chr5 38687682 38687975 + 3 NA Intergenic L1MC5|LINE|L1 32445 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 703-98 chr8 129534536 129535047 + 3 NA intron (NR_130917, intron 1 of 3) AluSz|SINE|Alu 40227 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 528-218 chr6 40467798 40468031 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 89577 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 421-79 chr14 49727375 49727631 + 3 NA intron (NM_172193, intron 6 of 12) intron (NM_172193, intron 6 of 12) 34383 NM_172193 122773 Hs.509258 NM_172193 ENSG00000197776 KLHDC1 MST025 kelch domain containing 1 protein-coding 481-250 chr5 92476367 92476606 + 3 NA Intergenic Intergenic -1093169 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 649-30 chr16 9346717 9347087 + 3 NA Intergenic L1MA3|LINE|L1 -8686 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 651-84 chr3 134868353 134868694 + 3 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 73263 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 560-63 chr16 84037839 84038254 + 3 NA intron (NM_001080442, intron 1 of 9) AluSx|SINE|Alu 4111 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 627-92 chr5 61534163 61534460 + 3 NA intron (NM_020928, intron 9 of 13) intron (NM_020928, intron 9 of 13) -103449 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 290-453 chr8 98661227 98661388 + 3 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 164364 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 406-186 chr3 44723332 44723500 + 3 NA 3' UTR (NM_001134442, exon 3 of 3) 3' UTR (NM_001134442, exon 3 of 3) -6190 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 404-302 chr8 14325520 14325705 + 3 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 527898 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 346-348 chr4 46649906 46650153 + 3 NA Intergenic L1PA15-16|LINE|L1 259216 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 936 chr1 21057466 21058054 + 3 NA intron (NM_003760, intron 1 of 31) intron (NM_003760, intron 1 of 31) 53623 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 435-13 chr1 96658843 96659052 + 3 NA Intergenic AluJr|SINE|Alu -62658 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 595-47 chr14 48762112 48762408 + 3 NA Intergenic Intergenic 824120 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 710-44 chr2 114514023 114514435 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 52652 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 608-21 chr11 58409636 58410016 + 3 NA Intergenic L1MA6|LINE|L1 -6417 NM_001005469 441608 Hs.553826 NM_001005469 ENSG00000172769 OR5B3 OR11-239|OR5B13|OST129 olfactory receptor family 5 subfamily B member 3 protein-coding 433-97 chr15 76609609 76609891 + 3 NA intron (NR_148227, intron 22 of 32) L1MCa|LINE|L1 23103 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 327-375 chr4 128952125 128952358 + 3 NA intron (NM_144643, intron 14 of 20) intron (NM_144643, intron 14 of 20) 140397 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 838-16 chr17 62355819 62356216 + 3 NA Intergenic Intergenic -14201 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 643-78 chr3 177263977 177264371 + 3 NA Intergenic L2a|LINE|L2 -30268 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 629-134 chr8 132041284 132041579 + 3 NA intron (NM_001080399, intron 5 of 13) MIRc|SINE|MIR 17951 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 360-466 chr8 89828013 89828272 + 3 NA Intergenic Intergenic 70326 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 219-383 chrX 45968158 45968295 + 3 NA Intergenic L1M4c|LINE|L1 -116736 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 663-84 chr5 29534364 29534879 + 3 NA Intergenic L1PA17|LINE|L1 -138645 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 545-256 chr9 93419091 93419313 + 3 NA Intergenic L1M3c|LINE|L1 32406 NR_136235 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 749-83 chr7 34332854 34333214 + 3 NA Intergenic Intergenic -325184 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 468-86 chr14 97199544 97199834 + 3 NA Intergenic Intergenic 44832 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 241-319 chr5 178585602 178585723 + 3 NA intron (NM_173465, intron 1 of 28) intron (NM_173465, intron 1 of 28) 4731 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 521-222 chr6 133800769 133801097 + 3 NA intron (NR_109982, intron 2 of 8) L1PREC2|LINE|L1 -20214 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 575-167 chr6 45275826 45276161 + 3 NA intron (NM_001350325, intron 2 of 10) L1ME4b|LINE|L1 -52324 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 566-204 chr9 917730 917936 + 3 NA intron (NM_001363767, intron 4 of 4) intron (NM_001363767, intron 4 of 4) -58822 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 1272-2 chr12 29835766 29836500 + 3 NA Intergenic L1MA3|LINE|L1 -51374 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 561-187 chr7 86126063 86126412 + 3 NA Intergenic Intergenic -517672 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 300-474 chr8 91616202 91616315 + 3 NA Intergenic HAL1ME|LINE|L1 366939 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 676-13 chr1 199138865 199139232 + 3 NA Intergenic L2c|LINE|L2 -9550 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 283-296 chr3 105077427 105077585 + 3 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -289207 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 1025 chr1 58017658 58018196 + 3 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 157346 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 738-18 chr14 38620280 38620697 + 3 NA Intergenic L1PA15-16|LINE|L1 -262108 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 296-250 chr2 182451424 182451571 + 3 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -24449 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 267-87 chr12 56050846 56050956 + 3 NA Intergenic AluJb|SINE|Alu 8983 NM_001029 6231 Hs.447562 NM_001029 ENSG00000197728 RPS26 DBA10|S26|eS26 ribosomal protein S26 protein-coding 422-90 chr14 87750039 87750269 + 3 NA Intergenic Intergenic -94860 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 449-46 chr11 95560826 95561032 + 3 NA Intergenic Intergenic 228853 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 269-294 chr4 115746804 115746993 + 3 NA Intergenic L2|LINE|L2 -552827 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 829-18 chr17 54565609 54565989 + 3 NA Intergenic L2|LINE|L2 -334892 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 492-20 chr10 41725857 41726138 + 3 NA Intergenic ALR/Alpha|Satellite|centr 642048 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 671-107 chr9 28016191 28016449 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -442454 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1163-8 chr2 122066324 122067003 + 3 NA Intergenic CR1_Mam|LINE|CR1 311012 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 700-75 chr4 181093274 181093601 + 3 NA intron (NR_033918, intron 2 of 2) L1PA4|LINE|L1 65712 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 504-65 chr14 34209932 34210201 + 3 NA Intergenic Intergenic 252174 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 470-153 chr20 21759017 21759294 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 53491 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 570-169 chr5 174479040 174479347 + 3 NA intron (NR_125806, intron 2 of 5) L1M4|LINE|L1 142839 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 793-54 chr9 31882461 31882769 + 3 NA Intergenic Intergenic -501125 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 355-333 chr3 116582158 116582289 + 3 NA Intergenic Intergenic 29750 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 333-147 chr14 58191511 58191666 + 3 NA Intergenic Intergenic -8561 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 296-486 chr8 131457553 131457762 + 3 NA Intergenic Intergenic -416748 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 605-112 chr7 56638489 56638832 + 3 NA Intergenic L1PREC2|LINE|L1 -100530 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 426-265 chr7 26613359 26613644 + 3 NA Intergenic L2b|LINE|L2 -24370 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 436-182 chr3 35281764 35281957 + 3 NA intron (NR_110817, intron 2 of 3) L1PA11|LINE|L1 112163 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 424-145 chr2 153764361 153764612 + 3 NA Intergenic AluSp|SINE|Alu -107436 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 461-196 chr4 76033779 76033972 + 3 NA 3' UTR (NM_001302123, exon 4 of 4) 3' UTR (NM_001302123, exon 4 of 4) 2195 NM_001302123 6373 Hs.632592 NM_005409 ENSG00000169248 CXCL11 H174|I-TAC|IP-9|IP9|SCYB11|SCYB9B|b-R1 C-X-C motif chemokine ligand 11 protein-coding 520-202 chr4 28584378 28584717 + 3 NA Intergenic Intergenic -235035 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 658-68 chr2 166561772 166562160 + 3 NA Intergenic Intergenic -74995 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 217-341 chr7 3562595 3562718 + 3 NA intron (NM_152744, intron 1 of 44) L1MB3|LINE|L1 261404 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 597-115 chr6 61836899 61837263 + 3 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 262951 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 150-78 chr4 63383972 63384070 + 3 NA Intergenic Intergenic 1025429 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 397-18 chr1 186719694 186719982 + 3 NA Intergenic MIRb|SINE|MIR 39184 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 499-96 chr18 52136401 52136678 + 3 NA Intergenic L1M4b|LINE|L1 -203658 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 779-25 chr16 79726687 79727224 + 3 NA intron (NR_104663, intron 5 of 5) L2c|LINE|L2 -43516 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 386-122 chr16 60143331 60143487 + 3 NA Intergenic Intergenic 216384 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 805-43 chr7 4554131 4554770 + 3 NA Intergenic Intergenic -127845 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 620-46 chr16 59034677 59035125 + 3 NA Intergenic Intergenic -300585 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 1103-10 chr5 45145354 45145894 + 3 NA Intergenic L1M1|LINE|L1 336677 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 522-223 chr6 64695912 64696154 + 3 NA intron (NM_001292009, intron 22 of 43) L1M2|LINE|L1 -605385 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 316-570 chr8 137573987 137574128 + 3 NA Intergenic Intergenic -160469 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 762-40 chr2 229350486 229351037 + 3 NA Intergenic Intergenic -79474 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 440-133 chr2 167671765 167672077 + 3 NA Intergenic L1M3c|LINE|L1 -146751 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 521-55 chr11 103725259 103725575 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -124489 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 286-477 chr9 72506701 72506849 + 3 NA Intergenic Intergenic -15026 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 400-37 chr10 84510694 84510994 + 3 NA intron (NM_001351292, intron 11 of 11) intron (NM_001351292, intron 11 of 11) 85675 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 469-233 chr5 162021732 162022031 + 3 NA Intergenic L1M1|LINE|L1 -20685 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 586-162 chr9 9730126 9730514 + 3 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -69072 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 254-371 chr7 21226842 21227033 + 3 NA Intergenic Intergenic -201146 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 401-226 chr4 35202612 35202752 + 3 NA Intergenic Intergenic -932935 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 680-101 chr5 158269125 158269528 + 3 NA Intergenic L2a|LINE|L2 140447 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 968-24 chr5 125462183 125462701 + 3 NA Intergenic Charlie14a|DNA|hAT-Charlie -30819 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 364-420 chr7 95086819 95087011 + 3 NA intron (NM_017650, intron 2 of 15) FLAM_C|SINE|Alu 177017 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 408-353 chr9 18274287 18274440 + 3 NA Intergenic Intergenic -199790 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 514-44 chr11 13195430 13195716 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -81079 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 331-300 chr2 197734997 197735140 + 3 NA intron (NM_033030, intron 10 of 10) intron (NM_033030, intron 10 of 10) 29699 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 620-32 chr14 36184279 36184588 + 3 NA Intergenic Intergenic -7782 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 638-4 chr1 75362544 75362851 + 3 NA intron (NM_001320283, intron 1 of 21) L1MA7|LINE|L1 228309 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 721-56 chr3 133170634 133170969 + 3 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 45980 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 550-228 chr8 63533414 63533756 + 3 NA Intergenic Intergenic 67736 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 474-122 chr19 30388949 30389132 + 3 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 16656 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 573-205 chr9 4411894 4412214 + 3 NA Intergenic Intergenic -78414 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 356-22 chr1 179395607 179395832 + 3 NA intron (NR_073544, intron 11 of 25) intron (NR_073544, intron 11 of 25) 29675 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 486-102 chr15 98075497 98075790 + 3 NA Intergenic Intergenic 13110 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 313-316 chr21 43578481 43578677 + 3 NA intron (NM_007031, intron 8 of 8) intron (NM_007031, intron 8 of 8) 13397 NM_017445 54145 NM_017445 ENSG00000234289 H2BFS H2B/s H2B histone family member S protein-coding 342-42 chr1 205188628 205188803 + 3 NA intron (NM_199462, intron 1 of 11) intron (NM_199462, intron 1 of 11) 22987 NM_199462 25778 Hs.6874 NM_015375 ENSG00000133059 DSTYK CAKUT1|DustyPK|HDCMD38P|RIP5|RIPK5|SPG23 dual serine/threonine and tyrosine protein kinase protein-coding 694-10 chr10 20661583 20661860 + 3 NA Intergenic Intergenic 109751 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 498-288 chr9 74810457 74810698 + 3 NA intron (NM_017662, intron 13 of 38) intron (NM_017662, intron 13 of 38) 76770 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 452-190 chr4 93515706 93515914 + 3 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -312943 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 656-104 chr6 35430450 35430729 + 3 NA Intergenic Intergenic -21772 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE FA complementation group E protein-coding 857-7 chr10 18743984 18744516 + 3 NA Intergenic L1MEd|LINE|L1 84819 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 578-137 chr5 73422163 73422384 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 26504 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 362-466 chr9 107662477 107662624 + 3 NA Intergenic L1M5|LINE|L1 -172781 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 677-34 chr16 8419389 8419752 + 3 NA Intergenic L2b|LINE|L2 170268 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 825-20 chr2 133290369 133290697 + 3 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) 24338 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 528-15 chr1 97720971 97721318 + 3 NA intron (NM_001160301, intron 5 of 5) intron (NM_001160301, intron 5 of 5) -75777 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 779-26 chr18 5813056 5813566 + 3 NA Intergenic MIRb|SINE|MIR -27384 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 577-124 chr3 168461775 168462023 + 3 NA intron (NR_021485, intron 3 of 15) L1M4c|LINE|L1 -89955 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 375-98 chr12 40093034 40093189 + 3 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 12970 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 456-31 chr10 54706979 54707222 + 3 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 94131 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 1044-19 chr5 146627185 146627887 + 3 NA intron (NM_181678, intron 8 of 10) intron (NM_181678, intron 8 of 10) -111423 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 393-35 chr10 29942718 29942896 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 116779 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 281-321 chr4 79580746 79580951 + 3 NA Intergenic MIR|SINE|MIR 88255 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 665-33 chr14 68437870 68438161 + 3 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 190772 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 709-79 chr5 152982807 152983275 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -10692 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 818-15 chr12 22879893 22880449 + 3 NA Intergenic Intergenic 255000 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 624-105 chr5 162830790 162831084 + 3 NA Intergenic Intergenic -606634 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 578-55 chr14 49204371 49204736 + 3 NA Intergenic Intergenic 381827 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 390-313 chr5 180434458 180434665 + 3 NA Intergenic Intergenic -59818 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 555-34 chr11 66610246 66610657 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -6131 NM_001198846 100526737 Hs.523822 NM_001198845 ENSG00000248643 RBM14-RBM4 COAZ|PSP2|RBM14|SIP RBM14-RBM4 readthrough protein-coding 553-50 chr12 119359175 119359518 + 3 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 24617 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 820-33 chr22 27862782 27863443 + 3 NA intron (NM_001284278, intron 8 of 11) intron (NM_001284278, intron 8 of 11) 56102 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 289-383 chr5 113280487 113280678 + 3 NA intron (NM_001085377, intron 3 of 18) L2c|LINE|L2 14356 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 341-356 chr3 176266267 176266418 + 3 NA Intergenic L1MA6|LINE|L1 21791 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 503-270 chr7 105263833 105264121 + 3 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 5100 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 826-16 chr12 39673084 39673697 + 3 NA intron (NM_001031748, intron 7 of 12) intron (NM_001031748, intron 7 of 12) 47207 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 200-274 chr8 111627030 111627157 + 3 NA Intergenic L1MA8|LINE|L1 250454 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 384-337 chr7 3425925 3426064 + 3 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 124742 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 503-187 chr22 49329768 49330062 + 3 NA Intergenic Intergenic 213551 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 564-32 chr11 63291927 63292237 + 3 NA intron (NM_001039752, intron 2 of 9) THE1B|LTR|ERVL-MaLR 2179 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 475-210 chr4 128972081 128972275 + 3 NA intron (NM_144643, intron 9 of 20) intron (NM_144643, intron 9 of 20) 121361 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 251-259 chr4 14329365 14329527 + 3 NA Intergenic Intergenic 217478 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 477-267 chr7 148151122 148151382 + 3 NA intron (NM_014141, intron 16 of 22) MIRb|SINE|MIR -439514 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 286-233 chr2 209309219 209309399 + 3 NA Intergenic Intergenic -114738 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 570-43 chr11 80230068 80230477 + 3 NA Intergenic L1MA6|LINE|L1 532531 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 370-167 chr16 5301775 5302002 + 3 NA Intergenic L1ME2|LINE|L1 -204068 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 537-194 chr5 54240289 54240503 + 3 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 70177 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 389-11 chr1 82954859 82955028 + 3 NA intron (NR_147074, intron 2 of 10) intron (NR_147074, intron 2 of 10) 29979 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 577-139 chr5 5949372 5949693 + 3 NA Intergenic L1MB8|LINE|L1 387760 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 398-123 chr16 6320323 6320561 + 3 NA intron (NM_018723, intron 2 of 15) L1PB2|LINE|L1 300739 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 646-56 chr2 35395262 35395500 + 3 NA Intergenic Intergenic -76024 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 250-329 chr5 2496525 2496641 + 3 NA Intergenic Intergenic -184382 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 432-50 chr11 92459588 92459733 + 3 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 107564 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 648-4 chr1 118524173 118524668 + 3 NA Intergenic L1M1|LINE|L1 -339192 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 444-256 chr8 76755554 76755873 + 3 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -72438 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 278-215 chr2 68867359 68867532 + 3 NA intron (NM_014482, intron 1 of 1) L2b|LINE|L2 3952 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 472-173 chr2 185858248 185858422 + 3 NA Intergenic L1M4|LINE|L1 -58184 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 673-14 chr10 49231618 49231993 + 3 NA Intergenic L1MC5a|LINE|L1 -43414 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 1004 chr1 114006193 114006848 + 3 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat 27046 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 770-47 chr20 39437657 39438181 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -213171 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 271-243 chr21 31623231 31623387 + 3 NA Intergenic MER77|LTR|ERVL -36313 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 293-55 chr11 21762568 21762721 + 3 NA Intergenic Intergenic -430441 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 467-117 chr18 46597213 46597424 + 3 NA intron (NM_144612, intron 8 of 39) L1ME3E|LINE|L1 -38006 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 379-247 chr4 104537340 104537555 + 3 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -42553 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 433-234 chr5 144934427 144934671 + 3 NA Intergenic L1MA9|LINE|L1 729158 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 673-109 chr7 61947346 61947731 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1356518 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 490-186 chr3 155002554 155002729 + 3 NA Intergenic Intergenic -21483 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 343-449 chr5 131020842 131021076 + 3 NA Intergenic L1ME4b|LINE|L1 144297 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 868-15 chr17 34197554 34198090 + 3 NA Intergenic L1ME2|LINE|L1 -14190 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 653-27 chr11 99764869 99765271 + 3 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 208925 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 519-98 chr2 30701662 30701900 + 3 NA Intergenic L1ME1|LINE|L1 105665 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 722-72 chr7 108069759 108070028 + 3 NA intron (NM_001318046, intron 17 of 33) intron (NM_001318046, intron 17 of 33) 60468 NM_007356 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 491-258 chr8 87604281 87604461 + 3 NA Intergenic Intergenic 269644 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 477-194 chr3 19715162 19715447 + 3 NA Intergenic Intergenic 218913 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 530-202 chr5 92876955 92877144 + 3 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 694294 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 572-59 chr15 48543367 48543736 + 3 NA intron (NM_000138, intron 6 of 65) L1MC5a|LINE|L1 102237 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 511-176 chr3 102818573 102818910 + 3 NA Intergenic L1MC1|LINE|L1 383726 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 308-423 chr6 71697273 71697503 + 3 NA Intergenic Intergenic -189315 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 199-185 chr4 109519117 109519204 + 3 NA intron (NM_001300813, intron 12 of 24) U2|snRNA|snRNA 30462 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 1035-8 chr2 218045064 218045473 + 3 NA intron (NR_034176, intron 2 of 13) LTR49-int|LTR|ERV1 10334 NR_034176 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 465-130 chr2 85961133 85961335 + 3 NA Intergenic MER52A|LTR|ERV1 71954 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 763-58 chr6 170119545 170119942 + 3 NA Intergenic L1MEf|LINE|L1 -40899 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 690-101 chr8 124651531 124651915 + 3 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 76750 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 881-22 chr2 136591638 136592187 + 3 NA Intergenic MLT1O|LTR|ERVL-MaLR -173633 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 628-54 chr16 53741531 53741787 + 3 NA intron (NM_001363897, intron 1 of 7) MLT1J|LTR|ERVL-MaLR 37503 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 387-192 chr2 222174476 222174633 + 3 NA Intergenic Intergenic -123593 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 708-56 chr4 130969738 130970143 + 3 NA Intergenic Intergenic 593579 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 449-122 chr2 80231395 80231598 + 3 NA intron (NM_001282598, intron 7 of 17) MER4D1|LTR|ERV1 73256 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 367-124 chr14 66886805 66887024 + 3 NA intron (NM_001024218, intron 5 of 21) L1MB4|LINE|L1 -302526 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 678-70 chr3 97752294 97752580 + 3 NA 3' UTR (NM_001080448, exon 18 of 18) 3' UTR (NM_001080448, exon 18 of 18) -12084 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 425-95 chr15 25495906 25496095 + 3 NA Intergenic L1MC1|LINE|L1 -56944 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 337-187 chr15 99330306 99330430 + 3 NA intron (NM_001321676, intron 6 of 10) L1M4a2|LINE|L1 72843 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 528-82 chr14 64605081 64605379 + 3 NA Intergenic Intergenic 55269 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 527-282 chr9 84016190 84016470 + 3 NA Intergenic L1MC3|LINE|L1 35525 NM_001358291 80010 Hs.726327 NM_024945 ENSG00000178966 RMI1 BLAP75|C9orf76|FAAP75 RecQ mediated genome instability 1 protein-coding 611-81 chr2 173299567 173299931 + 3 NA Intergenic LTR25-int|LTR|ERV1 -17713 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 465-84 chr14 81934734 81935006 + 3 NA Intergenic Intergenic -191732 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 829-9 chr10 78347546 78348125 + 3 NA Intergenic Intergenic 80493 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 308-339 chr4 70628944 70629163 + 3 NA intron (NM_031889, intron 1 of 8) intron (NM_031889, intron 1 of 8) 309 NM_031889 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 422-194 chr3 132773112 132773399 + 3 NA intron (NR_002811, intron 3 of 10) MLT2B4|LTR|ERVL -50796 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 425-75 chr13 53633713 53633959 + 3 NA Intergenic Intergenic -181583 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 624-127 chr9 3582451 3582720 + 3 NA Intergenic L1MDb|LINE|L1 -56584 NM_134428 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 464-67 chr14 67517179 67517490 + 3 NA intron (NM_001348546, intron 1 of 2) MIRc|SINE|MIR -1849 NM_001348548 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 503-8 chr1 49983751 49984102 + 3 NA intron (NM_001323575, intron 1 of 12) MER49|LTR|ERV1 40028 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 285-451 chr9 27008081 27008287 + 3 NA intron (NM_001099224, intron 8 of 13) intron (NM_001099224, intron 8 of 13) -2512 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 362-262 chr22 49211365 49211555 + 3 NA Intergenic Intergenic 332006 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 408-346 chr8 130893261 130893453 + 3 NA intron (NM_001115, intron 7 of 17) intron (NM_001115, intron 7 of 17) 147552 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 321-146 chr12 118742018 118742150 + 3 NA Intergenic Intergenic 19595 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 261-60 chr11 27690497 27690639 + 3 NA intron (NR_033315, intron 6 of 6) UCON74|DNA?|DNA? 9099 NM_170734 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 349-255 chr2 66145520 66145712 + 3 NA Intergenic Intergenic 212712 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 460-36 chr10 56479350 56479531 + 3 NA Intergenic Intergenic -118167 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 622-82 chr21 30215196 30215582 + 3 NA exon (NM_199328, exon 1 of 1) exon (NM_199328, exon 1 of 1) 708 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 451-184 chr5 140770545 140770741 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -15493 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 547-6 chr1 115171818 115172247 + 3 NA Intergenic L1MC3|LINE|L1 -82529 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 565-174 chr7 158181625 158181915 + 3 NA intron (NM_130843, intron 5 of 21) L1PB3|LINE|L1 327185 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 760-12 chr12 34629173 34629666 + 3 NA Intergenic ALR/Alpha|Satellite|centr 606923 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 530-43 chr11 101457623 101457900 + 3 NA intron (NM_004621, intron 10 of 12) MIRb|SINE|MIR 62144 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 484-131 chr2 67184572 67184743 + 3 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -28751 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 239-414 chr8 121003731 121003829 + 3 NA Intergenic Intergenic -191734 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 382-121 chr15 68966210 68966463 + 3 NA intron (NM_001184780, intron 1 of 15) L1PB2|LINE|L1 35811 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 838-10 chr12 118807861 118808209 + 3 NA Intergenic L1MA1|LINE|L1 25501 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 263-330 chr5 113903380 113903544 + 3 NA Intergenic LTR80A|LTR|ERVL 389768 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 1225-5 chr2 160822191 160822963 + 3 NA Intergenic L1MA5|LINE|L1 -314378 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 953-23 chr5 79888192 79888820 + 3 NA Intergenic Intergenic -48073 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 486-182 chr21 20038647 20038957 + 3 NA Intergenic MamRep1151|LTR?|LTR? -139047 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 391-226 chr3 28105256 28105454 + 3 NA Intergenic Intergenic -136264 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 485-277 chr8 9162802 9163037 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -11380 NM_001201329 79660 Hs.458513 NM_024607 ENSG00000173281 PPP1R3B GL|PPP1R4|PTG protein phosphatase 1 regulatory subunit 3B protein-coding 902-40 chr8 124051880 124052356 + 3 NA intron (NM_001039112, intron 22 of 40) intron (NM_001039112, intron 22 of 40) -11336 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 474-213 chr4 84343080 84343310 + 3 NA Intergenic L1PA8A|LINE|L1 -44026 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 446-155 chr2 123866327 123866516 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 158753 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 494-292 chr8 113170071 113170263 + 3 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 206985 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 1165-10 chr3 175138531 175139300 + 3 NA intron (NM_207015, intron 2 of 13) (AT)n|Simple_repeat|Simple_repeat -23673 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 521-139 chr20 5382348 5382609 + 3 NA Intergenic Intergenic 63270 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 506-144 chr2 75659414 75659710 + 3 NA 3' UTR (NM_014763, exon 6 of 6) 3' UTR (NM_014763, exon 6 of 6) 12779 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 487-6 chr1 38441050 38441239 + 3 NA Intergenic L1MEc|LINE|L1 -34052 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 544-233 chr8 137289695 137290024 + 3 NA Intergenic L1MC3|LINE|L1 123729 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 453-276 chr8 63128379 63128579 + 3 NA Intergenic AluJr4|SINE|Alu 39963 NR_102684 101410533 Hs.163027 NR_102684 ENSG00000270673 YTHDF3-AS1 - YTHDF3 antisense RNA 1 (head to head) ncRNA 892-39 chr8 122513347 122513829 + 3 NA intron (NR_131202, intron 2 of 3) MIRb|SINE|MIR 55056 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 563-140 chr4 92157239 92157667 + 3 NA Intergenic L1MA8|LINE|L1 119849 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 315-507 chr9 28356087 28356281 + 3 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 363121 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1063-20 chr7 39306887 39307458 + 3 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 21962 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 403-31 chr10 61931138 61931322 + 3 NA intron (NM_032199, intron 2 of 9) Charlie1a|DNA|hAT-Charlie 29531 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 452-252 chr7 72072891 72073095 + 3 NA intron (NM_001363460, intron 3 of 5) L1M4c|LINE|L1 264398 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 386-195 chr2 208848581 208848815 + 3 NA Intergenic Intergenic 306056 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 505-153 chr2 100710315 100710576 + 3 NA Intergenic L1MC5|LINE|L1 106706 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 420-90 chr15 90130717 90130889 + 3 NA intron (NR_149130, intron 2 of 2) MLT2A2|LTR|ERVL -28249 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 533-252 chrX 73445689 73445964 + 3 NA Intergenic L2a|LINE|L2 -1428 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 1055-13 chr4 1481334 1481948 + 3 NA Intergenic L1MEc|LINE|L1 -75199 NM_001290079 54729 Hs.526396 NM_001290079 ENSG00000235608 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 423-31 chr10 84279142 84279296 + 3 NA promoter-TSS (NR_038220) promoter-TSS (NR_038220) -761 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 537-139 chr20 19578076 19578348 + 3 NA intron (NM_020689, intron 3 of 16) MLT1K|LTR|ERVL-MaLR -293616 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 394-134 chr17 58876968 58877248 + 3 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 121239 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 380-208 chr2 224270367 224270556 + 3 NA Intergenic L1MC4a|LINE|L1 131533 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 392-84 chr14 71380831 71381023 + 3 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -17410 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 460-174 chr20 42553090 42553453 + 3 NA intron (NM_133170, intron 7 of 31) L2|LINE|L2 -132212 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 604-2 chr1 78374132 78374488 + 3 NA Intergenic L2a|LINE|L2 -116664 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 526-181 chr4 66303491 66303737 + 3 NA Intergenic L1M4|LINE|L1 26790 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 698-49 chr20 56197783 56198241 + 3 NA Intergenic Intergenic -50720 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 478-232 chr5 31048061 31048260 + 3 NA Intergenic Intergenic -145526 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 755-5 chr1 91485186 91485621 + 3 NA Intergenic Intergenic -15444 NM_001134419 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 578-155 chr7 34211499 34211859 + 3 NA Intergenic MIRb|SINE|MIR 306140 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 695-20 chr10 132875893 132876259 + 3 NA intron (NM_001200049, intron 31 of 57) L1M5|LINE|L1 66494 NM_001200049 54777 Hs.298038 NM_017609 ENSG00000171811 CFAP46 C10orf123|C10orf124|C10orf92|C10orf93|TTC40|bA288G11.4|bA288G11.5|bB137A17.2|bB137A17.3 cilia and flagella associated protein 46 protein-coding 598-35 chr12 46498963 46499351 + 3 NA intron (NR_125380, intron 3 of 3) L1MB1|LINE|L1 115050 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 610-23 chr10 81422178 81422595 + 3 NA Intergenic MIR1_Amn|SINE|MIR -452808 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 600-136 chr8 134302770 134303021 + 3 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -295176 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 437-151 chr2 194126499 194126719 + 3 NA Intergenic L1M1|LINE|L1 -217660 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 844-60 chr6 148671614 148671956 + 3 NA Intergenic L1PA7|LINE|L1 -75245 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 513-277 chr8 65312182 65312369 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -131935 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 257-266 chr3 57476693 57476870 + 3 NA intron (NM_001366028, intron 13 of 73) intron (NM_001366028, intron 13 of 73) 67563 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 539-82 chr15 97218111 97218438 + 3 NA Intergenic Intergenic 303537 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 618-2 chr1 38280383 38280635 + 3 NA Intergenic Intergenic -65742 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 227-387 chr9 25087097 25087228 + 3 NA Intergenic L1ME1|LINE|L1 -541265 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 514-181 chr3 24958672 24958874 + 3 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 129450 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 449-60 chr12 90572898 90573121 + 3 NA Intergenic L1MA3|LINE|L1 279691 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 208-23 chr10 61534526 61534673 + 3 NA Intergenic Intergenic 54558 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 640-56 chr2 11981251 11981525 + 3 NA Intergenic Intergenic -25728 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 461-110 chr18 10046132 10046417 + 3 NA Intergenic Intergenic 132258 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 362-32 chr1 195794239 195794412 + 3 NA Intergenic L2a|LINE|L2 294390 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 268-214 chr2 168737955 168738088 + 3 NA intron (NM_001256126, intron 8 of 10) L1MC5|LINE|L1 48408 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 614-125 chr8 29185341 29185782 + 3 NA intron (NM_015254, intron 6 of 39) L3|LINE|CR1 77509 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 517-83 chr14 88190382 88190750 + 3 NA intron (NM_138317, intron 5 of 6) intron (NM_138317, intron 5 of 6) 80345 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 538-169 chr4 36924159 36924462 + 3 NA Intergenic Intergenic -77469 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 566-184 chr7 94636380 94636630 + 3 NA intron (NM_001346717, intron 1 of 9) MIRc|SINE|MIR 19628 NM_001362809 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 514-77 chr14 20322094 20322325 + 3 NA TTS (NR_145735) TTS (NR_145735) 1117 NR_145735 109616976 Hs.742613 NR_145735 ENSG00000222489 SNORA79B - small nucleolar RNA, H/ACA box 79B snoRNA 551-188 chr7 36910710 36911129 + 3 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 8513 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 531-188 chr5 4125808 4126048 + 3 NA Intergenic L1ME2z|LINE|L1 530096 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 485-183 chr3 89694326 89694698 + 3 NA Intergenic Intergenic 586891 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 517-5 chr1 61389653 61389984 + 3 NA intron (NM_001134673, intron 7 of 10) Charlie19a|DNA|hAT-Charlie -136300 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 497-90 chr17 5762611 5762801 + 3 NA Intergenic Intergenic -9528 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 1042-4 chr11 21845976 21846491 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR -346852 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 414-131 chr18 6752978 6753211 + 3 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -23232 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 345-564 chrX 40407244 40407408 + 3 NA Intergenic AluJr|SINE|Alu 144409 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 886-30 chr5 68218843 68219195 + 3 NA intron (NM_181523, intron 1 of 15) intron (NM_181523, intron 1 of 15) 3263 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 493-213 chr3 137506530 137506772 + 3 NA Intergenic MIRb|SINE|MIR -257664 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 667-66 chr3 81756086 81756450 + 3 NA intron (NM_000158, intron 1 of 15) intron (NM_000158, intron 1 of 15) 5377 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 478-131 chr2 15669360 15669641 + 3 NA Intergenic Intergenic -21282 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 488-100 chr16 82802651 82802936 + 3 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 29474 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 727-88 chr9 28009021 28009468 + 3 NA intron (NM_001354574, intron 5 of 5) L1MB8|LINE|L1 -435378 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1102-10 chr21 26417347 26417830 + 3 NA intron (NR_135515, intron 1 of 3) intron (NR_135515, intron 1 of 3) 11645 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 444-226 chr6 143504999 143505178 + 3 NA intron (NM_032020, intron 2 of 6) intron (NM_032020, intron 2 of 6) 6632 NM_032020 2519 Hs.17680 NM_032020 ENSG00000001036 FUCA2 dJ20N2.5 alpha-L-fucosidase 2 protein-coding 444-217 chr6 26640668 26640913 + 3 NA intron (NM_001242798, intron 2 of 2) Charlie4z|DNA|hAT-Charlie 18956 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 398-262 chr5 18812093 18812289 + 3 NA Intergenic Intergenic 1004917 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 319-211 chr19 9234453 9234645 + 3 NA Intergenic L1MA4A|LINE|L1 -16495 NM_001079935 26648 Hs.129832 NM_001079935 ENSG00000237521 OR7E24 HSHT2|OR19-8|OR7E24P|OR7E24Q olfactory receptor family 7 subfamily E member 24 protein-coding 449-244 chr6 150773789 150774066 + 3 NA intron (NM_001329803, intron 3 of 13) L1ME3G|LINE|L1 52828 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 441-188 chr5 3378877 3379128 + 3 NA Intergenic L1MD1|LINE|L1 -73814 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 689-38 chr16 65851993 65852348 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -275870 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 692-14 chr11 40608898 40609347 + 3 NA intron (NM_020929, intron 2 of 4) L1MB1|LINE|L1 -315992 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 499-168 chr3 79823301 79823639 + 3 NA Intergenic Intergenic -55472 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 414-123 chr17 58228392 58228589 + 3 NA Intergenic LTR28|LTR|ERV1 -8885 NM_001165927 54903 Hs.408843 NM_017777 ENSG00000011143 MKS1 BBS13|JBTS28|MES|MKS|POC12 MKS transition zone complex subunit 1 protein-coding 537-197 chr5 66022656 66022905 + 3 NA intron (NM_001253697, intron 8 of 25) intron (NM_001253697, intron 8 of 25) -77207 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 518-114 chr18 25634745 25635057 + 3 NA Intergenic Intergenic -282735 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 478-59 chr12 30448587 30448868 + 3 NA Intergenic Intergenic 228517 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 385-107 chr14 102399306 102399439 + 3 NA intron (NM_014844, intron 2 of 19) L1MB3|LINE|L1 36431 NM_001172631 9895 Hs.195667 NM_014844 ENSG00000196663 TECPR2 KIAA0329|SPG49 tectonin beta-propeller repeat containing 2 protein-coding 687-108 chr7 53848231 53848597 + 3 NA Intergenic L1M6|LINE|L1 -36483 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 442-82 chr14 72211942 72212142 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 278515 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 445-277 chr8 117089744 117089894 + 3 NA intron (NM_001172815, intron 2 of 10) L2b|LINE|L2 -45176 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 414-244 chr4 96259656 96259863 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -50944 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 249-334 chr5 58344341 58344502 + 3 NA Intergenic L1PB|LINE|L1 115665 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 466-278 chr8 130189568 130189807 + 3 NA intron (NM_001362925, intron 5 of 29) L1MA4|LINE|L1 -104919 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 917-13 chr20 39337430 39337892 + 3 NA Intergenic Intergenic -112913 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 819-20 chr3 54185932 54186336 + 3 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 63582 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 408-34 chr1 237194651 237194914 + 3 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 152598 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 278-78 chr12 102684550 102684743 + 3 NA Intergenic Intergenic 139753 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 443-222 chr4 65324359 65324609 + 3 NA intron (NM_001281765, intron 17 of 17) intron (NM_001281765, intron 17 of 17) -319984 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 559-53 chr15 24745699 24746008 + 3 NA Intergenic Intergenic 70459 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 468-139 chr2 43118595 43118840 + 3 NA Intergenic MER47B|DNA|TcMar-Tigger -16272 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 367-476 chr9 91062866 91063064 + 3 NA TTS (NR_033912) TTS (NR_033912) 12167 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 1080-4 chr12 7141615 7142060 + 3 NA intron (NM_014718, intron 9 of 17) intron (NM_014718, intron 9 of 17) 11466 NM_014718 9746 Hs.535378 NM_014718 ENSG00000139182 CLSTN3 CDHR14|CSTN3|alcbeta calsyntenin 3 protein-coding 530-190 chr5 18724406 18724640 + 3 NA Intergenic Intergenic 917249 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 1188-5 chr18 622185 622870 + 3 NA intron (NM_199167, intron 3 of 8) intron (NM_199167, intron 3 of 8) 5827 NM_199167 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 831-35 chr4 59418455 59418803 + 3 NA Intergenic L1M5|LINE|L1 405056 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 497-40 chr11 45707539 45707759 + 3 NA Intergenic L2c|LINE|L2 -14659 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 243-128 chr14 60529464 60529608 + 3 NA Intergenic Intergenic 20390 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 626-74 chr2 141998543 141998936 + 3 NA intron (NM_018557, intron 1 of 90) MER4D0|LTR|ERV1 132962 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 748-89 chrX 56165802 56166345 + 3 NA intron (NM_001324104, intron 2 of 6) Charlie1a|DNA|hAT-Charlie -66283 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 355-316 chr3 34980853 34981041 + 3 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 413076 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 436-232 chr5 19088251 19088623 + 3 NA Intergenic Intergenic 797835 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 780-37 chr3 26286839 26287364 + 3 NA Intergenic MER4D|LTR|ERV1 -335705 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 668-34 chr15 85145651 85145969 + 3 NA Intergenic AluSc|SINE|Alu 88971 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 566-35 chr12 62462667 62462887 + 3 NA Intergenic Intergenic -4049 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 480-235 chr5 67930944 67931198 + 3 NA Intergenic L1ME1|LINE|L1 137858 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 403-157 chr2 79847923 79848057 + 3 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 18593 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 503-257 chr7 26043075 26043447 + 3 NA Intergenic Intergenic -93275 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 509-188 chr5 45958163 45958506 + 3 NA Intergenic ALR/Alpha|Satellite|centr -261954 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 647-61 chr21 31002625 31003009 + 3 NA Intergenic Intergenic 35659 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 403-89 chr14 28658049 28658292 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger 107149 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 713-61 chr4 28165880 28166129 + 3 NA Intergenic L1MA2|LINE|L1 -653578 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 648-115 chr5 110221358 110221830 + 3 NA Intergenic L1M2c|LINE|L1 292321 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 506-243 chr5 151811173 151811417 + 3 NA 3' UTR (NM_005754, exon 12 of 12) 3' UTR (NM_005754, exon 12 of 12) -39119 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 409-214 chr4 26675076 26675297 + 3 NA intron (NM_001292054, intron 8 of 17) intron (NM_001292054, intron 8 of 17) 91102 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 392-244 chr5 9866333 9866493 + 3 NA intron (NR_027112, intron 4 of 12) L1MEg|LINE|L1 12036 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 597-64 chr2 36189211 36189533 + 3 NA Intergenic L1M4b|LINE|L1 166198 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 435-200 chr5 106744950 106745144 + 3 NA Intergenic Intergenic 265967 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 524-83 chr16 71710007 71710278 + 3 NA intron (NM_015020, intron 2 of 18) AluJb|SINE|Alu 5698 NM_001289003 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 503-250 chr6 149241007 149241224 + 3 NA intron (NM_001292035, intron 2 of 6) MLT1B|LTR|ERVL-MaLR 16436 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 682-23 chr12 41938816 41939252 + 3 NA Intergenic MamGypLTR1d|LTR|Gypsy 174845 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 758-58 chr3 190105378 190105749 + 3 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 15334 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 377-149 chr16 62702748 62702903 + 3 NA Intergenic Intergenic -666387 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 376-284 chr4 67935695 67935896 + 3 NA intron (NM_001114387, intron 3 of 9) intron (NM_001114387, intron 3 of 9) 27698 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 291-141 chr14 90332702 90332851 + 3 NA promoter-TSS (NM_017970) promoter-TSS (NM_017970) -835 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 430-163 chr2 154633628 154633782 + 3 NA Intergenic Intergenic -64876 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 796-26 chr2 33800209 33800711 + 3 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -72243 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 700-47 chr2 40113065 40113425 + 3 NA 3' UTR (NM_001112802, exon 8 of 8) 3' UTR (NM_001112802, exon 8 of 8) 195611 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 459-164 chr20 48001783 48002005 + 3 NA Intergenic L1ME3|LINE|L1 -11777 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 471-237 chr6 132377281 132377622 + 3 NA intron (NM_015529, intron 1 of 11) intron (NM_015529, intron 1 of 11) 24024 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 652-53 chr16 83096059 83096406 + 3 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -105934 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 488-134 chr2 61642331 61642649 + 3 NA Intergenic Intergenic -104134 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 835-56 chr8 104119448 104119831 + 3 NA intron (NM_001348498, intron 19 of 24) Tigger10|DNA|TcMar-Tigger -103696 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 689-100 chr8 132580954 132581264 + 3 NA intron (NR_073525, intron 11 of 12) L1MEg|LINE|L1 -19630 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 468-144 chr2 77193071 77193268 + 3 NA intron (NR_146416, intron 1 of 1) Tigger3a|DNA|TcMar-Tigger 207204 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 666-119 chr9 25517778 25518076 + 3 NA Intergenic MER21B|LTR|ERVL 160931 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 932-12 chr3 57516367 57516755 + 3 NA intron (NM_198564, intron 4 of 11) L2a|LINE|L2 27783 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 959-8 chr12 118932293 118932691 + 3 NA Intergenic AluSz|SINE|Alu -49049 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 435-260 chr8 136789290 136789548 + 3 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 258621 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 682-44 chr19 11998706 11999139 + 3 NA intron (NR_134929, intron 1 of 2) L1MB2|LINE|L1 11305 NR_134927 101928464 Hs.631643 NR_134927 ENSG00000219665 ZNF433-AS1 - ZNF433 and ZNF878 antisense RNA 1 ncRNA 701-88 chr7 62940869 62941470 + 3 NA Intergenic ALR/Alpha|Satellite|centr 362887 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 586-37 chr11 109353765 109354123 + 3 NA Intergenic Intergenic -68246 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 925-11 chr14 37347711 37348119 + 3 NA intron (NM_138731, intron 10 of 13) intron (NM_138731, intron 10 of 13) 149978 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 919-17 chr4 456407 456853 + 3 NA intron (NM_133474, intron 2 of 2) AluSc|SINE|Alu 17579 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 919-16 chr3 131930997 131931427 + 3 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 54719 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 417-98 chr16 8535183 8535391 + 3 NA intron (NR_110736, intron 3 of 3) intron (NR_110736, intron 3 of 3) 54551 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 494-47 chr12 13697509 13697727 + 3 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 282738 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 642-69 chr3 34458032 34458367 + 3 NA Intergenic L1M2|LINE|L1 659569 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 663-121 chr9 34501218 34501601 + 3 NA intron (NM_001281428, intron 12 of 19) L2c|LINE|L2 21581 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 349-457 chr6 123149261 123149408 + 3 NA Intergenic Intergenic 153099 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 372-421 chr6 4758765 4758971 + 3 NA intron (NM_001368125, intron 3 of 8) L1ME4b|LINE|L1 -17536 NM_001368126 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 760-43 chr21 15323024 15323474 + 3 NA Intergenic Intergenic -258249 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 484-75 chr15 63583714 63583981 + 3 NA intron (NM_001256702, intron 10 of 13) L1MB4|LINE|L1 -13540 NM_001367808 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 865-8 chr10 104826554 104827035 + 3 NA intron (NM_014978, intron 1 of 26) Tigger1|DNA|TcMar-Tigger -160578 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 737-14 chr12 37905202 37905606 + 3 NA Intergenic ALR/Alpha|Satellite|centr -411370 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 281-190 chr2 6212395 6212524 + 3 NA Intergenic (TACATA)n|Simple_repeat|Simple_repeat 162963 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 735-30 chr17 54933783 54934248 + 3 NA intron (NM_001321173, intron 8 of 9) MER4A|LTR|ERV1 33163 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 350-26 chr1 184291316 184291490 + 3 NA Intergenic Intergenic -95626 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 699-49 chr2 79839498 79839942 + 3 NA intron (NM_001282598, intron 3 of 17) L1ME3Cz|LINE|L1 26863 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 649-109 chr8 83814021 83814352 + 3 NA Intergenic Intergenic -368601 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 460-310 chrX 120742148 120742529 + 3 NA Intergenic Intergenic -112188 NM_152692 29071 Hs.643920 NM_152692 ENSG00000171155 C1GALT1C1 C1GALT2|C38H2-L1|COSMC|HSPC067|MST143|TNPS C1GALT1 specific chaperone 1 protein-coding 406-12 chr1 106909797 106909960 + 3 NA Intergenic Tigger3|DNA|TcMar-Tigger 91639 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 691-37 chr2 31036692 31037101 + 3 NA intron (NM_024572, intron 1 of 14) L1M4|LINE|L1 92744 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 354-375 chr5 67561365 67561523 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 85345 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 424-110 chr18 23714749 23714998 + 3 NA intron (NM_001127717, intron 2 of 73) L1MB3|LINE|L1 25420 NM_001127717 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 755-7 chr1 110747157 110747677 + 3 NA Intergenic Intergenic -72477 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 653-2 chr1 70801152 70801478 + 3 NA Intergenic Intergenic 94862 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 641-79 chr3 148025630 148025882 + 3 NA Intergenic Intergenic -52403 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 636-118 chr5 152319101 152319487 + 3 NA Intergenic Intergenic 85985 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 443-98 chr14 82364192 82364433 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -278320 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 432-238 chr5 175115510 175115752 + 3 NA Intergenic MIR|SINE|MIR -119900 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 915-21 chr4 84056980 84057556 + 3 NA intron (NR_125909, intron 7 of 8) AluJb|SINE|Alu 241901 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 1111-11 chr5 163144085 163144710 + 3 NA Intergenic LTR16C|LTR|ERVL -293174 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 305-278 chr2 157208374 157208566 + 3 NA Intergenic L1MEf|LINE|L1 -49235 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 973-3 chr10 39324609 39325250 + 3 NA Intergenic ALR/Alpha|Satellite|centr 628333 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 442-195 chr3 116358524 116358813 + 3 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -1356 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 778-15 chr11 60816428 60816857 + 3 NA Intergenic Intergenic -25471 NM_024098 79080 Hs.4253 NM_024098 ENSG00000110104 CCDC86 - coiled-coil domain containing 86 protein-coding 555-117 chr21 21793022 21793283 + 3 NA intron (NR_109958, intron 4 of 4) intron (NR_109958, intron 4 of 4) 46167 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 405-335 chr8 135053332 135053532 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -180699 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 817-6 chr1 209056864 209057331 + 3 NA Intergenic L1PA13|LINE|L1 84643 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 495-174 chr4 54200850 54201136 + 3 NA Intergenic L1MC2|LINE|L1 -28300 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 906-29 chr8 126306782 126307309 + 3 NA Intergenic L1MEc|LINE|L1 -18450 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 664-114 chr8 74107632 74108095 + 3 NA Intergenic MIRc|SINE|MIR 116471 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 632-84 chr4 69073136 69073504 + 3 NA intron (NM_001349568, intron 1 of 6) intron (NM_001349568, intron 1 of 6) 22056 NM_001349568 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 802-68 chr7 124740190 124740575 + 3 NA Intergenic MLT2B2|LTR|ERVL 25410 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 552-160 chr4 125373099 125373443 + 3 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 56859 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 915-26 chr7 54907147 54907769 + 3 NA Intergenic HAL1|LINE|L1 -111559 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 379-154 chr2 34345489 34345655 + 3 NA Intergenic Intergenic 278346 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 606-167 chr8 124955574 124955930 + 3 NA Intergenic Intergenic 13744 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 396-226 chr3 106724907 106725133 + 3 NA Intergenic Intergenic 515618 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 508-153 chr3 113647075 113647306 + 3 NA Intergenic Intergenic 49452 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 746-16 chr11 31706192 31706506 + 3 NA intron (NM_001288726, intron 10 of 11) AluJr|SINE|Alu 94312 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 369-25 chr10 4255726 4255935 + 3 NA Intergenic Intergenic -11918 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 398-4 chr1 56654565 56654857 + 3 NA intron (NM_006252, intron 1 of 8) intron (NM_006252, intron 1 of 8) -9393 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 481-51 chr11 37957443 37957729 + 3 NA Intergenic Intergenic 18985 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 405-232 chr4 87333123 87333299 + 3 NA Intergenic L1PA14|LINE|L1 -10329 NM_001136230 345275 Hs.284414 NM_178135 ENSG00000170509 HSD17B13 HMFN0376|NIIL497|SCDR9|SDR16C3 hydroxysteroid 17-beta dehydrogenase 13 protein-coding 409-191 chr22 41769194 41769468 + 3 NA intron (NM_152513, intron 19 of 30) L1M4|LINE|L1 -31291 NM_001304797 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 346-158 chr15 61401470 61401683 + 3 NA Intergenic L1ME4a|LINE|L1 -172274 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 781-13 chr13 22107889 22108316 + 3 NA Intergenic Intergenic -102183 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 263-111 chr14 64203417 64203605 + 3 NA intron (NM_015180, intron 100 of 114) intron (NM_015180, intron 100 of 114) -10633 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 321-552 chr8 79814873 79815115 + 3 NA intron (NR_110954, intron 3 of 5) intron (NR_110954, intron 3 of 5) 46852 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 587-143 chr6 54967885 54968249 + 3 NA Intergenic MIR|SINE|MIR 121296 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 384-252 chr4 38256468 38256638 + 3 NA Intergenic L1ME1|LINE|L1 -110361 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 804-16 chr12 47425557 47426015 + 3 NA Intergenic L1MA4A|LINE|L1 10778 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 376-217 chr20 46500874 46501020 + 3 NA 3' UTR (NM_001353824, exon 5 of 5) 3' UTR (NM_001353824, exon 5 of 5) 12625 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 176-139 chr8 56979866 56979951 + 3 NA intron (NM_017813, intron 2 of 4) intron (NM_017813, intron 2 of 4) 13959 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 740-68 chr6 164137226 164137569 + 3 NA Intergenic Intergenic -465913 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 539-130 chr2 189856168 189856450 + 3 NA intron (NM_001128144, intron 9 of 11) L1MC5|LINE|L1 71859 NR_110332 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 554-91 chr17 13448689 13449058 + 3 NA Intergenic Intergenic 94773 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 549-189 chr7 25379318 25379606 + 3 NA Intergenic Intergenic -150976 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 591-11 chr10 31462758 31463032 + 3 NA intron (NM_001323678, intron 2 of 6) intron (NM_001323678, intron 2 of 6) -63140 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 347-205 chr2 42564241 42564412 + 3 NA intron (NM_001282755, intron 2 of 17) intron (NM_001282755, intron 2 of 17) -3719 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 932-22 chr5 8644515 8645028 + 3 NA Intergenic Intergenic 183846 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 422-154 chr2 126592504 126592684 + 3 NA Intergenic L1ME1|LINE|L1 -63341 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 504-194 chr4 100321175 100321496 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 73912 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 572-173 chr8 118741831 118742198 + 3 NA Intergenic L2a|LINE|L2 -120051 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 431-214 chr4 132234942 132235184 + 3 NA Intergenic L1PB3|LINE|L1 -356026 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 471-263 chr8 84999850 85000131 + 3 NA Intergenic Intergenic -107248 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 517-62 chr12 119517632 119517939 + 3 NA intron (NM_178499, intron 8 of 13) intron (NM_178499, intron 8 of 13) -75989 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 357-381 chr6 46191258 46191464 + 3 NA Intergenic Intergenic -20351 NM_021572 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 222-209 chr20 55177662 55177751 + 3 NA Intergenic Intergenic -245337 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 364-295 chr4 30391862 30392016 + 3 NA Intergenic Intergenic -328430 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 849-30 chr4 60258553 60259062 + 3 NA Intergenic Intergenic -663812 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 606-70 chr18 57267027 57267359 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -85364 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 493-248 chr5 117132433 117132713 + 3 NA Intergenic L1MC4a|LINE|L1 -282939 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 478-286 chr8 69868563 69868874 + 3 NA Intergenic Intergenic -33740 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 473-276 chr8 90749205 90749456 + 3 NA Intergenic L1PA15-16|LINE|L1 -42445 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 580-112 chr3 43888314 43888666 + 3 NA Intergenic L1MA2|LINE|L1 -196896 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 527-142 chr2 157956473 157956844 + 3 NA Intergenic L1MB7|LINE|L1 -38521 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 573-69 chr14 82258697 82259066 + 3 NA Intergenic Intergenic -383751 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 429-157 chr2 101094653 101094949 + 3 NA intron (NM_001102426, intron 1 of 19) L1MC3|LINE|L1 56646 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 466-303 chrX 124293236 124293488 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -39298 NM_001355534 100132015 NM_001355534 ENSG00000282419 TEX13D - TEX13 family member D protein-coding 546-26 chr10 101173127 101173484 + 3 NA Intergenic AluSx1|SINE|Alu -3017 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 314-424 chr4 61977073 61977302 + 3 NA intron (NM_001371343, intron 16 of 23) (T)n|Simple_repeat|Simple_repeat 184578 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 281-382 chr5 174148933 174149074 + 3 NA Intergenic MER91C|DNA|hAT-Tip100 103297 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 610-33 chr12 16137677 16137964 + 3 NA Intergenic Intergenic 139865 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 397-68 chr12 75024300 75024486 + 3 NA Intergenic Intergenic 185355 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 639-85 chr4 37258884 37259312 + 3 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 14355 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 409-248 chr5 55535653 55535854 + 3 NA promoter-TSS (NM_003711) promoter-TSS (NM_003711) -675 NM_176895 8611 Hs.696231 NM_003711 ENSG00000067113 PLPP1 LLP1a|LPP1|PAP-2a|PAP2|PPAP2A phospholipid phosphatase 1 protein-coding 497-163 chr21 27347316 27347562 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -374940 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 476-225 chr5 92661016 92661209 + 3 NA Intergenic Intergenic 910231 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 572-158 chr6 162219277 162219660 + 3 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -507664 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 1000-4 chr13 88332431 88333219 + 3 NA Intergenic Intergenic 189958 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 777-44 chr3 27266324 27266791 + 3 NA intron (NM_152534, intron 23 of 38) L2a|LINE|L2 -50034 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 518-41 chr10 113316795 113316984 + 3 NA Intergenic LTR79|LTR|ERVL 187618 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 613-59 chr2 67878012 67878247 + 3 NA Intergenic AluJo|SINE|Alu -52567 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 958-24 chr7 64934784 64935184 + 3 NA Intergenic L1M2|LINE|L1 31742 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 554-138 chr21 23357043 23357267 + 3 NA Intergenic Intergenic 27680 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 741-17 chr12 98160058 98160351 + 3 NA Intergenic MIRb|SINE|MIR -164756 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 558-90 chr2 17014332 17014713 + 3 NA Intergenic L1PA15|LINE|L1 -348688 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 504-167 chr3 40789475 40789810 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 264682 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 1008 chr1 209197445 209197901 + 3 NA Intergenic L1ME4b|LINE|L1 -127783 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 414-107 chr16 35854830 35855006 + 3 NA Intergenic Intergenic 108366 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 510-250 chr6 132181726 132182023 + 3 NA Intergenic L1PB1|LINE|L1 47896 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 559-82 chr18 80220922 80221166 + 3 NA intron (NM_032510, intron 1 of 2) L1M4|LINE|L1 26470 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 433-74 chr14 43327792 43328150 + 3 NA Intergenic L1MA9|LINE|L1 1179312 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 288-423 chr7 125667643 125667822 + 3 NA Intergenic Intergenic -403441 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 321-522 chr7 31907319 31907526 + 3 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 162985 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 694-101 chr5 25882338 25882692 + 3 NA Intergenic Intergenic 691562 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 586-109 chr4 34348973 34349342 + 3 NA Intergenic Intergenic -79410 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 763-2 chr1 105458619 105459114 + 3 NA Intergenic MER110-int|LTR|ERV1 160069 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 1195-10 chr3 119008273 119008939 + 3 NA intron (NM_001353319, intron 1 of 7) intron (NM_001353319, intron 1 of 7) 26240 NM_001015887 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 486-64 chr12 128592136 128592332 + 3 NA intron (NM_001136103, intron 3 of 8) intron (NM_001136103, intron 3 of 8) 231724 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 329-47 chr10 33066604 33066794 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 50108 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 403-7 chr1 67784840 67785012 + 3 NA intron (NM_018841, intron 1 of 3) MIRc|SINE|MIR -47362 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 604-86 chr2 115034729 115035149 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -29634 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 935-20 chr2 51877871 51878496 + 3 NA intron (NR_135237, intron 7 of 10) L1MA2|LINE|L1 -492465 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 750-19 chr14 78500812 78501236 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 97305 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 436-219 chr4 101868204 101868401 + 3 NA intron (NM_017935, intron 4 of 16) L1MCa|LINE|L1 54460 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 536-213 chr7 48220775 48221105 + 3 NA intron (NM_152701, intron 4 of 61) intron (NM_152701, intron 4 of 61) 49482 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 278-6 chr1 71842843 71842993 + 3 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) -5906 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 591-23 chr11 54782967 54783276 + 3 NA Intergenic ALR/Alpha|Satellite|centr 76289 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 525-17 chr1 217146520 217146798 + 3 NA Intergenic L1MC1|LINE|L1 -8957 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 575-168 chr6 48729206 48729548 + 3 NA Intergenic L1PA12|LINE|L1 -660688 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 620-84 chr3 7821948 7822361 + 3 NA Intergenic Intergenic 194153 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 837-19 chr2 106207534 106208206 + 3 NA Intergenic Intergenic -13531 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 300-208 chr2 116674715 116674980 + 3 NA Intergenic Intergenic -1139844 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 380-29 chr1 182506359 182506609 + 3 NA intron (NM_001366934, intron 10 of 22) L1MEc|LINE|L1 56338 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 559-94 chr2 82458023 82458245 + 3 NA Intergenic Intergenic -398669 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 523-109 chr18 4053985 4054183 + 3 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 91731 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 633-128 chrX 18054853 18055187 + 3 NA intron (NR_133641, intron 1 of 4) AluJo|SINE|Alu 49624 NR_133641 105373144 NR_133641 ENSG00000225882 LINC01456 - long intergenic non-protein coding RNA 1456 ncRNA 443-78 chr13 19869265 19869466 + 3 NA Intergenic Intergenic -5716 NM_001142684 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 583-158 chr8 63339540 63339929 + 3 NA Intergenic Intergenic -126115 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 498-60 chr11 111487889 111488186 + 3 NA intron (NM_017589, intron 5 of 5) L1MA2|LINE|L1 -22565 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 444-162 chr3 162872721 162872923 + 3 NA Intergenic MER110|LTR|ERV1 430479 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 263-180 chr19 37604702 37604849 + 3 NA intron (NM_001172225, intron 4 of 4) L1ME1|LINE|L1 9899 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 510-150 chr2 104993169 104993479 + 3 NA intron (NR_110603, intron 1 of 2) Tigger1|DNA|TcMar-Tigger -44745 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 484-164 chr3 10794067 10794284 + 3 NA Intergenic MIRb|SINE|MIR -22053 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 422-232 chr5 20534654 20534830 + 3 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 40971 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 530-30 chr10 82421632 82421871 + 3 NA TTS (NM_001370083) TTS (NM_001370083) -188831 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 419-198 chr3 187583246 187583400 + 3 NA Intergenic L1PREC2|LINE|L1 87071 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 781-35 chr2 224741157 224741705 + 3 NA Intergenic Intergenic -156034 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 235-400 chr9 117153028 117153137 + 3 NA intron (NM_001365068, intron 3 of 22) MLT1H|LTR|ERVL-MaLR 28119 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 780-35 chr21 29971011 29971401 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -31154 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 502-287 chr9 97054507 97054775 + 3 NA Intergenic MER21-int|LTR|ERVL -14998 NM_001201575 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 957-12 chr19 12105727 12106195 + 3 NA intron (NM_001348163, intron 2 of 3) L1MCa|LINE|L1 13664 NM_001348165 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 487-73 chr13 42478197 42478382 + 3 NA intron (NR_135319, intron 3 of 3) MIRc|SINE|MIR 53397 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 505-329 chrX 83659762 83660025 + 3 NA Intergenic L1PA16|LINE|L1 151603 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 315-516 chr9 102199620 102199822 + 3 NA Intergenic Intergenic -319916 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 896-39 chr8 105233400 105233934 + 3 NA Intergenic L1MDa|LINE|L1 -84771 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 669-107 chr7 105649553 105649952 + 3 NA intron (NM_001318229, intron 3 of 9) intron (NM_001318229, intron 3 of 9) 29403 NM_001318229 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 664-128 chrX 133568562 133568901 + 3 NA intron (NM_001164619, intron 6 of 6) L2b|LINE|L2 -153242 NM_001448 2239 Hs.58367 NM_001448 ENSG00000076716 GPC4 K-glypican glypican 4 protein-coding 835-18 chr14 71795317 71795736 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -136645 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 559-121 chr3 68203044 68203262 + 3 NA intron (NM_001252216, intron 2 of 4) L1MC1|LINE|L1 198906 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 837-40 chr8 8253510 8253958 + 3 NA Intergenic Intergenic 25164 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 432-128 chr2 76444602 76444838 + 3 NA Intergenic HAL1ME|LINE|L1 -541245 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 369-218 chr2 160772837 160773084 + 3 NA Intergenic Intergenic -279153 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 276-158 chr14 97559635 97559800 + 3 NA intron (NR_110166, intron 4 of 4) MLT1I|LTR|ERVL-MaLR 100901 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 556-17 chr10 15673949 15674176 + 3 NA intron (NM_001291494, intron 6 of 28) intron (NM_001291494, intron 6 of 28) 45860 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 265-206 chr2 212195748 212195878 + 3 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 230547 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 465-181 chr3 120805111 120805398 + 3 NA Intergenic Intergenic 31103 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 428-325 chr9 137706381 137706576 + 3 NA intron (NM_001354612, intron 1 of 8) intron (NM_001354612, intron 1 of 8) 81928 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 638-40 chr14 74480511 74480996 + 3 NA promoter-TSS (NR_039858) promoter-TSS (NR_039858) -549 NR_039858 100616211 NR_039858 ENSG00000283944 MIR4709 mir-4709 microRNA 4709 ncRNA 436-145 chr2 153078558 153078728 + 3 NA Intergenic L1M5|LINE|L1 360006 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 535-210 chr5 152245341 152245663 + 3 NA intron (NR_109876, intron 1 of 2) L2a|LINE|L2 159777 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 402-218 chr3 136677968 136678136 + 3 NA intron (NM_005862, intron 1 of 33) intron (NM_005862, intron 1 of 33) 74326 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 169-93 chr5 18369933 18370023 + 3 NA Intergenic Intergenic 562704 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 507-14 chr1 181287310 181287544 + 3 NA Intergenic L1MEc|LINE|L1 51039 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 479-155 chr4 35616475 35616659 + 3 NA Intergenic L1ME2|LINE|L1 627372 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 486 chr1 23831318 23831513 + 3 NA Intergenic Intergenic -5956 NM_001166059 3155 Hs.533444 NM_000191 ENSG00000117305 HMGCL HL 3-hydroxy-3-methylglutaryl-CoA lyase protein-coding 585-76 chr2 116446418 116446906 + 3 NA Intergenic L1MC3|LINE|L1 1102847 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 541-131 chr2 165610344 165610535 + 3 NA intron (NM_024969, intron 2 of 4) intron (NM_024969, intron 2 of 4) 38103 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 492-261 chr8 88464470 88464685 + 3 NA Intergenic L1MC3|LINE|L1 -137094 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 621-35 chr14 84265591 84265899 + 3 NA Intergenic Intergenic -1006187 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 729-53 chr3 117353601 117354029 + 3 NA Intergenic Intergenic 337110 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 436-164 chr20 40864109 40864381 + 3 NA Intergenic L2a|LINE|L2 -116468 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 617-105 chr5 26367363 26367732 + 3 NA Intergenic L1MA4A|LINE|L1 671039 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 381-36 chr10 15059699 15059930 + 3 NA intron (NM_018324, intron 4 of 8) AluSz|SINE|Alu 15871 NM_001039702 55301 Hs.24309 NM_018324 ENSG00000152463 OLAH AURA1|SAST|TE2|THEDC1 oleoyl-ACP hydrolase protein-coding 765-65 chr8 123870658 123871138 + 3 NA intron (NM_001039112, intron 1 of 40) L1MC3|LINE|L1 18911 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 456-70 chr12 126799047 126799204 + 3 NA Intergenic AluJo|SINE|Alu -26863 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 447-119 chr2 23084216 23084403 + 3 NA Intergenic L1M4b|LINE|L1 -300870 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 634-156 chr8 131441840 131442188 + 3 NA Intergenic Intergenic -401105 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 561-185 chr7 72072376 72072741 + 3 NA intron (NM_001363460, intron 3 of 5) L1M4c|LINE|L1 264833 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 411-70 chr12 61164725 61164894 + 3 NA Intergenic L1MEf|LINE|L1 1028030 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 384-299 chr5 94256267 94256434 + 3 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -144651 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 387-398 chr9 107364284 107364544 + 3 NA Intergenic AluSx|SINE|Alu 79645 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 764-17 chr12 34649568 34649974 + 3 NA Intergenic ALR/Alpha|Satellite|centr 627275 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 514-306 chrX 88957901 88958175 + 3 NA Intergenic Intergenic 210813 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 340-408 chr4 91065838 91066026 + 3 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 830901 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 414-89 chr14 79170352 79170530 + 3 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -29541 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 212-30 chr10 20126343 20126443 + 3 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 309961 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 432-211 chr4 169862383 169862542 + 3 NA Intergenic Intergenic -104518 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 770-6 chr10 99043763 99044287 + 3 NA intron (NM_021828, intron 3 of 11) L1PA16|LINE|L1 -119457 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 513-286 chr8 120364944 120365167 + 3 NA intron (NM_021110, intron 45 of 47) intron (NM_021110, intron 45 of 47) 80095 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 600-86 chr3 112197680 112197982 + 3 NA intron (NM_001320531, intron 19 of 27).2 intron (NM_001320531, intron 19 of 27).2 64408 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 215-166 chr2 227598503 227598614 + 3 NA Intergenic Intergenic 20097 NR_149019 729968 Hs.689550 NR_149019 LOC729968 - spore coat protein SP96 ncRNA 538-167 chr4 30350981 30351386 + 3 NA Intergenic Intergenic -369186 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 458-77 chr14 70648704 70648956 + 3 NA intron (NM_015351, intron 1 of 2) intron (NM_015351, intron 1 of 2) 6914 NM_015351 23508 Hs.79170 NM_015351 ENSG00000133985 TTC9 TTC9A tetratricopeptide repeat domain 9 protein-coding 1115 chr1 210874191 210874830 + 3 NA intron (NM_002238, intron 7 of 10) L1ME3Cz|LINE|L1 258864 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 686-15 chr11 41073561 41074019 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 385846 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 434-328 chrX 155280192 155280357 + 3 NA intron (NM_001289, intron 3 of 5) Tigger16a|DNA|TcMar-Tigger -15783 NM_171998 116442 Hs.632832 NM_171998 ENSG00000155961 RAB39B BGMR|MRX72|WSMN|WSN RAB39B, member RAS oncogene family protein-coding 570-152 chr5 9866623 9866877 + 3 NA intron (NR_027112, intron 4 of 12) L1MEg|LINE|L1 12373 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 259-391 chr8 79570801 79570910 + 3 NA Intergenic Intergenic -40262 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 503-155 chr2 123272792 123272984 + 3 NA Intergenic L1ME3|LINE|L1 -199407 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 361-169 chr17 48174001 48174207 + 3 NA intron (NM_001075099, intron 9 of 12) intron (NM_001075099, intron 9 of 12) -17593 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 828-29 chr20 35963040 35963363 + 3 NA Intergenic AluJb|SINE|Alu -5389 NM_001207076 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 527-201 chr5 11506666 11506964 + 3 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 82102 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 881-31 chr5 11388300 11388804 + 3 NA intron (NM_001288715, intron 5 of 20) intron (NM_001288715, intron 5 of 20) 200365 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 482-156 chr3 7004336 7004665 + 3 NA intron (NM_000844, intron 1 of 9) Charlie17b|DNA|hAT-Charlie -110483 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 340-491 chr6 165007478 165007674 + 3 NA Intergenic Intergenic -185513 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 552-224 chr9 81151739 81152062 + 3 NA Intergenic L2|LINE|L2 537635 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 293-415 chr7 126765315 126765500 + 3 NA intron (NM_001371088, intron 7 of 7) intron (NM_001371088, intron 7 of 7) 292777 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 733-39 chr2 133708923 133709434 + 3 NA Intergenic Intergenic -140715 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 434-298 chr8 130714701 130714865 + 3 NA Intergenic L1ME2|LINE|L1 -271109 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 535-199 chr5 44518401 44518702 + 3 NA Intergenic L1MCb|LINE|L1 -8269 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 734-76 chr8 104848629 104849063 + 3 NA Intergenic L1PREC2|LINE|L1 -259822 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 290-251 chr20 57305045 57305168 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 16485 NR_036219 100422883 NR_036219 ENSG00000266666 MIR4325 - microRNA 4325 ncRNA 744-44 chr3 18536428 18536839 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger -91041 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 537-169 chr4 52107841 52108116 + 3 NA Intergenic LTR85a|LTR|Gypsy? 56674 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 415-41 chr10 128605263 128605541 + 3 NA Intergenic L1ME3Cz|LINE|L1 -307431 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 695-93 chr6 76167500 76167921 + 3 NA Intergenic AluJr|SINE|Alu -95032 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 301-450 chr8 83226220 83226428 + 3 NA Intergenic Intergenic -177434 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 777-55 chr5 89638758 89639165 + 3 NA Intergenic L1MA4A|LINE|L1 377759 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 513-108 chr18 10764645 10764964 + 3 NA intron (NM_022068, intron 19 of 51) intron (NM_022068, intron 19 of 51) -5155 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 480-42 chr11 39958242 39958459 + 3 NA Intergenic Intergenic 334780 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1069-12 chr8 118690890 118691472 + 3 NA intron (NR_038210, intron 3 of 4) L1PB3|LINE|L1 -69218 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 714-6 chr1 164879864 164880266 + 3 NA intron (NM_001353131, intron 7 of 7) intron (NM_001353131, intron 7 of 7) -105424 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 220-79 chr12 7259914 7260067 + 3 NA Intergenic L2a|LINE|L2 -44342 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 298-515 chrX 69882259 69882493 + 3 NA intron (NM_001005609, intron 1 of 7) intron (NM_001005609, intron 1 of 7) -140481 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 793-48 chr7 112063211 112063671 + 3 NA intron (NM_001363540, intron 1 of 52) MER47A|DNA|TcMar-Tigger 142958 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 332-403 chr5 13684979 13685134 + 3 NA Intergenic Intergenic 259424 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 534-143 chr20 39209637 39209990 + 3 NA Intergenic Intergenic 14935 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 902-7 chr12 44339579 44340000 + 3 NA intron (NM_001286211, intron 6 of 6) L1M5|LINE|L1 503708 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 838-46 chrUn_GL000216v2 71640 72184 + 3 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 499-14 chr1 192211139 192211327 + 3 NA Intergenic L1PB2|LINE|L1 52771 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 712-69 chr5 9988179 9988485 + 3 NA Intergenic Intergenic -84508 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 507-168 chr3 126783474 126783774 + 3 NA intron (NM_032343, intron 4 of 7) L1M3|LINE|L1 79384 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 927-24 chr7 87970734 87971448 + 3 NA intron (NM_001324421, intron 2 of 28) intron (NM_001324421, intron 2 of 28) 36840 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 199-26 chr10 70894458 70894559 + 3 NA Intergenic Intergenic -5943 NM_001323004 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 563-141 chr4 124220994 124221308 + 3 NA Intergenic Intergenic 337283 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 654-74 chr20 40379008 40379384 + 3 NA Intergenic Intergenic 310040 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 349-418 chr5 78049023 78049231 + 3 NA intron (NM_003664, intron 22 of 26) intron (NM_003664, intron 22 of 26) 90880 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 615-109 chr5 78709636 78710044 + 3 NA Intergenic L1PA4|LINE|L1 -61068 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 412-84 chr13 100445903 100446153 + 3 NA intron (NM_001352605, intron 20 of 22) AluSx1|SINE|Alu 34987 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 568-137 chr3 102086526 102086840 + 3 NA Intergenic L3|LINE|CR1 -77022 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 391-255 chr4 44776215 44776373 + 3 NA Intergenic MER50-int|LTR|ERV1 -49660 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 246-421 chr8 129354404 129354513 + 3 NA intron (NR_130920, intron 3 of 3) intron (NR_130920, intron 3 of 3) -113218 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 486-166 chr20 12295806 12296172 + 3 NA Intergenic L1MA4A|LINE|L1 378096 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 387-388 chr9 29419957 29420125 + 3 NA Intergenic L1M4c|LINE|L1 -206440 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 918-20 chr4 64138599 64139001 + 3 NA Intergenic Cheshire|DNA|hAT-Charlie 270650 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1499-4 chr9 81420832 81421623 + 3 NA Intergenic LTR48|LTR|ERV1 268308 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 471-174 chr3 164831810 164832074 + 3 NA promoter-TSS (NR_126405) promoter-TSS (NR_126405) -462 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 782-16 chr12 47580718 47581366 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 124988 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 458-203 chr5 66749452 66749667 + 3 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) -79214 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 839-15 chr15 83953542 83954050 + 3 NA intron (NM_207517, intron 19 of 29) L1MA2|LINE|L1 -126391 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 444-43 chr11 87045400 87045680 + 3 NA intron (NR_033149, intron 1 of 13) intron (NR_033149, intron 1 of 13) 7606 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 537-15 chr1 177601343 177601567 + 3 NA Intergenic Intergenic -99069 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 668-26 chr14 44080440 44080747 + 3 NA Intergenic Intergenic 426690 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 501-49 chr12 34460874 34461110 + 3 NA Intergenic ALR/Alpha|Satellite|centr 438496 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 908-37 chr5 9339128 9339563 + 3 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -171988 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 958-19 chr3 34584976 34585742 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 786729 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 439-314 chrX 80589899 80590160 + 3 NA Intergenic L1PA4|LINE|L1 169582 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 377-227 chr2 157607416 157607651 + 3 NA intron (NM_145259, intron 1 of 8) L1MA4A|LINE|L1 -9973 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 568 chr1 29377817 29378183 + 3 NA Intergenic L1MA4|LINE|L1 -27886 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 515-128 chr2 160708385 160708707 + 3 NA Intergenic L1PA16|LINE|L1 -214739 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 357-294 chr3 185301776 185302007 + 3 NA intron (NM_001242317, intron 2 of 12) L1MB1|LINE|L1 18930 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 571-81 chr2 143064665 143064976 + 3 NA Intergenic L1M4|LINE|L1 -64599 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 1228-10 chr8 63568265 63569112 + 3 NA Intergenic L2c|LINE|L2 102839 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 519-196 chr6 64827781 64827972 + 3 NA intron (NM_001292009, intron 19 of 43) L1M4a1|LINE|L1 -473542 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 464-22 chr10 67693614 67693907 + 3 NA intron (NM_013266, intron 1 of 17) intron (NM_013266, intron 1 of 17) 2435 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 369-76 chr12 15421477 15421689 + 3 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 99075 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 474-202 chr4 40585079 40585258 + 3 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) 44696 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 745-60 chr6 45681488 45681913 + 3 NA Intergenic Intergenic 255897 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 918-21 chr5 17937137 17937688 + 3 NA Intergenic L1MA4A|LINE|L1 130138 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 476-105 chr16 72853235 72853451 + 3 NA intron (NM_001164766, intron 3 of 8) intron (NM_001164766, intron 3 of 8) -188373 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 744-45 chr3 100389240 100389607 + 3 NA intron (NM_014820, intron 1 of 11) L1MEd|LINE|L1 11666 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 649-67 chr3 8610432 8610678 + 3 NA Intergenic Intergenic 34243 NM_001256748 51066 Hs.736935 NM_015931 ENSG00000125046 SSUH2 C3orf32|SSU-2|fls485 ssu-2 homolog protein-coding 513-297 chr9 135730347 135730618 + 3 NA intron (NM_020822, intron 2 of 30) MLT1D|LTR|ERVL-MaLR 28297 NM_020822 57582 Hs.104950 NM_020822 ENSG00000107147 KCNT1 EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2 potassium sodium-activated channel subfamily T member 1 protein-coding 865-14 chr15 55561146 55561535 + 3 NA intron (NM_015617, intron 1 of 2) THE1D|LTR|ERVL-MaLR 27005 NM_001330326 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 572-153 chr6 61178633 61178864 + 3 NA Intergenic Intergenic -395382 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 419-287 chr8 53182960 53183151 + 3 NA Intergenic L1ME1|LINE|L1 68582 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 333-275 chr2 154513807 154513993 + 3 NA Intergenic Intergenic -56462 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 484-63 chr14 52565861 52566081 + 3 NA intron (NM_001353361, intron 1 of 7) MIR3|SINE|MIR 13135 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 460-89 chr15 46936008 46936202 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -247984 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 767-21 chr2 31468337 31468801 + 3 NA Intergenic LTR107_Mam|LTR|LTR -53827 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 437-176 chr3 133198613 133198855 + 3 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 58387 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 498-263 chr8 28262487 28262780 + 3 NA Intergenic Intergenic -54635 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 474-170 chr20 57954746 57954997 + 3 NA Intergenic MER77|LTR|ERVL -49033 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 604-48 chr14 85553958 85554343 + 3 NA intron (NR_144387, intron 3 of 4) intron (NR_144387, intron 3 of 4) 20801 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 732-10 chr10 60495623 60496159 + 3 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 77065 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 527-139 chr2 129028772 129029059 + 3 NA Intergenic Intergenic 164315 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 270-346 chr7 3771616 3771784 + 3 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -357985 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 214-116 chr16 50652970 50653083 + 3 NA Intergenic Intergenic -15829 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 492-98 chr15 39012441 39012666 + 3 NA Intergenic L1MD|LINE|L1 -238116 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 657-75 chr5 13825624 13826020 + 3 NA intron (NM_001369, intron 38 of 78) L1MB2|LINE|L1 118658 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 564-66 chr16 7685675 7685908 + 3 NA intron (NM_145892, intron 11 of 12) intron (NM_145892, intron 11 of 12) 352946 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 372-51 chr10 72846790 72846968 + 3 NA intron (NM_138357, intron 2 of 7) intron (NM_138357, intron 2 of 7) -46860 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 513-301 chrX 146417994 146418308 + 3 NA Intergenic LTR33B|LTR|ERVL -390279 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 439-49 chr11 39218474 39218634 + 3 NA Intergenic Intergenic 569696 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 452-256 chr7 104135627 104135851 + 3 NA intron (NM_002553, intron 13 of 13) Charlie23a|DNA|hAT-Charlie 72274 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 533-127 chr22 34483918 34484113 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 513901 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 510-242 chr6 10542605 10542823 + 3 NA intron (NM_145649, intron 3 of 4) L1MB7|LINE|L1 -13002 NM_001491 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 401-328 chr8 121798490 121798765 + 3 NA Intergenic Intergenic -157187 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 501-195 chr4 94140890 94141188 + 3 NA intron (NR_125922, intron 5 of 8) L1M2|LINE|L1 66517 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 454-179 chr2 166601598 166601933 + 3 NA Intergenic (AATATAA)n|Simple_repeat|Simple_repeat -114794 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 562-45 chr12 31924290 31924507 + 3 NA Intergenic AluYh3|SINE|Alu -35017 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 369-93 chr13 36609678 36609887 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -64238 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 396-185 chr2 234929523 234929726 + 3 NA Intergenic Intergenic -22393 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 392-92 chr15 50588494 50588648 + 3 NA intron (NR_149154, intron 26 of 37) intron (NR_149154, intron 26 of 37) -41905 NM_203494 373509 Hs.677758 NM_203494 ENSG00000170236 USP50 - ubiquitin specific peptidase 50 protein-coding 499-42 chr11 48660264 48660453 + 3 NA Intergenic ALR/Alpha|Satellite|centr 171565 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 506-211 chr4 105140086 105140343 + 3 NA Intergenic Intergenic -5661 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 975-17 chr6 142719769 142720206 + 3 NA Intergenic L1MEc|LINE|L1 -82098 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 703-17 chr11 7740652 7741004 + 3 NA Intergenic L1M3|LINE|L1 -34351 NM_001367963 341277 Hs.532475 NM_198185 ENSG00000183378 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 244-4 chr1 41520053 41520154 + 3 NA intron (NM_024503, intron 6 of 8) intron (NM_024503, intron 6 of 8) -35420 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 624-118 chr8 88571877 88572168 + 3 NA Intergenic Intergenic -244539 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 360-433 chr7 62769523 62769724 + 3 NA Intergenic ALR/Alpha|Satellite|centr 534433 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 304-499 chr8 35606210 35606444 + 3 NA intron (NM_001322818, intron 4 of 16) L1MC2|LINE|L1 61935 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 421-180 chr3 20611480 20611761 + 3 NA Intergenic L1M4c|LINE|L1 269152 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 522-136 chr2 100719502 100719817 + 3 NA Intergenic L1M7|LINE|L1 -100480 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 486-46 chr11 37131749 37132057 + 3 NA Intergenic Intergenic -533624 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 540-108 chr2 18011730 18012072 + 3 NA Intergenic Intergenic 133234 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 804-26 chr18 1872492 1872906 + 3 NA Intergenic Intergenic -513070 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 347-404 chr5 84166785 84167011 + 3 NA intron (NM_001278642, intron 3 of 9) L2a|LINE|L2 217969 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 294-328 chr4 44074072 44074241 + 3 NA Intergenic Intergenic 57094 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 437-138 chr2 103593356 103593625 + 3 NA Intergenic L1PA16|LINE|L1 -609061 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 409-161 chr2 214243610 214243785 + 3 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -167357 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 664-92 chr6 18586919 18587395 + 3 NA intron (NR_149116, intron 3 of 7) intron (NR_149116, intron 3 of 7) 15373 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 185-103 chr2 108159284 108159368 + 3 NA Intergenic MLT2C1|LTR|ERVL 58515 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 358-39 chr10 36625879 36626062 + 3 NA Intergenic Intergenic -499887 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 616-105 chr3 53385242 53385571 + 3 NA Intergenic Intergenic -37863 NM_001290205 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 564-192 chr7 107858992 107859392 + 3 NA Intergenic L2a|LINE|L2 -31915 NM_001289751 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 535-76 chr14 72639730 72640046 + 3 NA intron (NM_001280542, intron 8 of 10) L2c|LINE|L2 123068 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 457-77 chr16 3445920 3446222 + 3 NA intron (NM_001083601, intron 1 of 7) intron (NM_001083601, intron 1 of 7) 2391 NM_001083601 79903 Hs.513296 NM_024845 ENSG00000122390 NAA60 HAT4|NAT15|NatF|hNaa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 654-103 chr5 146982379 146982734 + 3 NA intron (NM_001271900, intron 2 of 10) L1MDa|LINE|L1 -63050 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 303-128 chr14 71895534 71895735 + 3 NA Intergenic LTR33|LTR|ERVL -36537 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 544-85 chr16 50951627 50951943 + 3 NA intron (NR_039672, intron 2 of 6) UCON70|Unknown|Unknown -65973 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 590-51 chr14 71976043 71976374 + 3 NA intron (NM_001370288, intron 2 of 16) L1MEg|LINE|L1 42681 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 443-300 chr8 135415699 135416031 + 3 NA Intergenic Intergenic -41591 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 485-288 chr8 104195919 104196169 + 3 NA intron (NM_001348498, intron 20 of 24) MER101-int|LTR|ERV1 -27291 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 651-47 chr16 48660866 48661194 + 3 NA Intergenic AluSz|SINE|Alu -50850 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 900-6 chr10 81516122 81516626 + 3 NA Intergenic Intergenic -358820 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 177-55 chr15 53583426 53583541 + 3 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) -42380 NR_102335 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 409-204 chr3 130372523 130372659 + 3 NA intron (NM_001278298, intron 1 of 40) L1MB7|LINE|L1 27075 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 621-37 chr14 98742277 98742660 + 3 NA Intergenic Intergenic 30855 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 416-107 chr13 74579047 74579254 + 3 NA Intergenic Intergenic 26307 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 367-213 chr2 113729631 113729904 + 3 NA intron (NM_001330315, intron 11 of 16) intron (NM_001330315, intron 11 of 16) -8399 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 499-144 chr20 15331211 15331493 + 3 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 134512 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 207-168 chr21 20312084 20312212 + 3 NA Intergenic Intergenic -53463 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 653-64 chr2 13546319 13546804 + 3 NA Intergenic L1MC3|LINE|L1 -539548 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 595-39 chr12 38007253 38007522 + 3 NA Intergenic ALR/Alpha|Satellite|centr -309387 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 396-345 chr8 25850254 25850538 + 3 NA intron (NM_022659, intron 15 of 15) AluSq2|SINE|Alu 195017 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 486-229 chr4 115271780 115272087 + 3 NA Intergenic L1ME3A|LINE|L1 -158313 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 507-76 chr13 93199086 93199445 + 3 NA Intergenic L1PB4|LINE|L1 -27542 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 430-208 chr4 33040148 33040382 + 3 NA Intergenic Intergenic 689227 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 581-10 chr10 30019566 30019873 + 3 NA intron (NM_020848, intron 3 of 3) L1MA9|LINE|L1 39867 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 549-141 chr3 87372692 87372936 + 3 NA Intergenic Intergenic -96230 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 682-56 chr2 198152877 198153248 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 222035 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 434-107 chr17 33128810 33129007 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 136057 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 429-302 chr8 87976153 87976309 + 3 NA Intergenic Intergenic -102216 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 748-92 chrX 103236186 103236565 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 18780 NM_153333 90843 Hs.389734 NM_153333 ENSG00000180964 TCEAL8 WEX3 transcription elongation factor A like 8 protein-coding 1044-10 chr18 47628956 47629504 + 3 NA Intergenic Intergenic 248734 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 894-7 chr10 123917207 123917772 + 3 NA Intergenic Intergenic -25682 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 606-175 chr9 103578451 103578676 + 3 NA Intergenic L1MA4|LINE|L1 -253530 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 561-67 chr14 65371988 65372194 + 3 NA Intergenic L1MC4|LINE|L1 -36908 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 438-102 chr18 75660833 75661087 + 3 NA Intergenic Intergenic 51443 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 443-191 chr22 25211867 25212022 + 3 NA Intergenic MIR|SINE|MIR -7695 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 601-4 chr1 74864417 74864675 + 3 NA Intergenic L1PREC2|LINE|L1 -131138 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 833-32 chr6 63147921 63148528 + 3 NA Intergenic L1MA2|LINE|L1 171753 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 551-21 chr10 67590052 67590358 + 3 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 75455 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 572-12 chr1 227811861 227812188 + 3 NA Intergenic L1M1|LINE|L1 -3693 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 657-8 chr1 186533210 186533533 + 3 NA Intergenic Intergenic -72257 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 547-229 chr8 25150509 25150743 + 3 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -34063 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 514-3 chr1 34057213 34057425 + 3 NA intron (NM_052896, intron 2 of 69) intron (NM_052896, intron 2 of 69) 107955 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 565-185 chr8 144987374 144987601 + 3 NA intron (NR_023392, intron 4 of 4) L1PA8|LINE|L1 -7378 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 477-88 chr14 51692640 51692825 + 3 NA intron (NM_001042481, intron 3 of 14) MER5A|DNA|hAT-Charlie -24551 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 215-3 chr1 45337765 45337861 + 3 NA intron (NM_012222, intron 1 of 15) L2a|LINE|L2 2144 NM_001048174 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 1164-15 chr9 28726299 28726855 + 3 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -7272 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 378-169 chr17 14806272 14806442 + 3 NA Intergenic HAL1b|LINE|L1 -208448 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 688-74 chr3 68591879 68592318 + 3 NA Intergenic LTR33|LTR|ERVL 91461 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 612-59 chr2 31718954 31719316 + 3 NA Intergenic L1PA8|LINE|L1 84845 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 333-125 chr12 127740828 127740976 + 3 NA Intergenic Intergenic -85314 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 397-294 chr7 12186353 12186538 + 3 NA Intergenic Intergenic -24849 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 699-99 chr7 89182392 89182755 + 3 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -386836 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 541-11 chr1 225281398 225281604 + 3 NA intron (NM_001367479, intron 54 of 85) MLT1D|LTR|ERVL-MaLR 146537 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 884-13 chr16 9929913 9930314 + 3 NA intron (NM_001134408, intron 3 of 13) intron (NM_001134408, intron 3 of 13) 251954 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 561-137 chr3 134079743 134080082 + 3 NA Intergenic L1MC5a|LINE|L1 -22264 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 1239-4 chr20 42236325 42237140 + 3 NA intron (NM_133170, intron 15 of 31) intron (NM_133170, intron 15 of 31) -448751 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 549-213 chr8 117434185 117434433 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -86404 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 495-102 chr2 26553029 26553213 + 3 NA intron (NM_194248, intron 1 of 46) intron (NM_194248, intron 1 of 46) 5635 NM_001287489 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 414-138 chr19 36746793 36747023 + 3 NA 3' UTR (NM_001193552, exon 5 of 5) 3' UTR (NM_001193552, exon 5 of 5) 25899 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 890 chr1 106292552 106293022 + 3 NA Intergenic Intergenic -264534 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 527-277 chr8 136728564 136728926 + 3 NA intron (NR_147196, intron 2 of 5) L1M4a1|LINE|L1 197947 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 279-361 chr6 52939606 52939781 + 3 NA Intergenic Intergenic -29995 NM_000847 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 535-59 chr12 97184561 97184848 + 3 NA Intergenic Intergenic 277238 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 1175-4 chr5 82904609 82905258 + 3 NA Intergenic L1M7|LINE|L1 -45097 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 718-19 chr12 39485005 39485406 + 3 NA Intergenic AluSg|SINE|Alu -42085 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 150-34 chr14 21842643 21842751 + 3 NA Intergenic Intergenic -171680 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 742-75 chr7 64520575 64521061 + 3 NA 3' UTR (NM_178558, exon 4 of 4) 3' UTR (NM_178558, exon 4 of 4) 42253 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 1046-7 chr19 9258682 9259406 + 3 NA Intergenic SATR1|Satellite|Satellite 8000 NM_001079935 26648 Hs.129832 NM_001079935 ENSG00000237521 OR7E24 HSHT2|OR19-8|OR7E24P|OR7E24Q olfactory receptor family 7 subfamily E member 24 protein-coding 737-43 chr2 59643738 59644208 + 3 NA Intergenic L1ME3|LINE|L1 426265 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 401-352 chrX 45419499 45419675 + 3 NA Intergenic L1M1|LINE|L1 -85801 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 387-338 chr7 33125140 33125355 + 3 NA Intergenic Intergenic -4038 NR_145412 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 465-222 chr5 42263558 42263807 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -88337 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 384-241 chr3 159484766 159484929 + 3 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 202201 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 706-27 chr15 60735008 60735465 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 53667 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 540-112 chr2 78393938 78394189 + 3 NA Intergenic L1PA10|LINE|L1 -103332 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 399-160 chr2 123704235 123704416 + 3 NA Intergenic L1MC3|LINE|L1 320849 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 675-18 chr11 110814672 110815046 + 3 NA Intergenic L1MB2|LINE|L1 -101670 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 560-148 chr6 62049248 62049527 + 3 NA intron (NR_146874, intron 2 of 13) L1M4|LINE|L1 236838 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 351-196 chr19 27988088 27988253 + 3 NA intron (NR_146733, intron 3 of 6) intron (NR_146733, intron 3 of 6) -194230 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 302-55 chr10 85290988 85291153 + 3 NA Intergenic L1M3de|LINE|L1 -92132 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 495-132 chr20 20774451 20774648 + 3 NA Intergenic Intergenic -61905 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 721-8 chr10 14276744 14277311 + 3 NA intron (NR_134578, intron 2 of 3) AluSz6|SINE|Alu 53857 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 865-22 chr2 13461375 13461993 + 3 NA Intergenic L1MC3|LINE|L1 -454671 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 277-12 chr1 85006463 85006644 + 3 NA Intergenic L1PB1|LINE|L1 -9440 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 505-291 chr7 104485243 104485529 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 156730 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 443-267 chr6 125247635 125248010 + 3 NA intron (NM_003287, intron 3 of 6) intron (NM_003287, intron 3 of 6) 44111 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 306-304 chr3 39567737 39567928 + 3 NA Intergenic L2c|LINE|L2 65766 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 501-38 chr11 63562382 63562580 + 3 NA intron (NM_017878, intron 1 of 3) intron (NM_017878, intron 1 of 3) 898 NM_017878 54979 Hs.272805 NM_017878 ENSG00000133328 PLAAT2 HRASLS2|PLA1/2-2|PLAAT-2 phospholipase A and acyltransferase 2 protein-coding 917-14 chr20 59999004 59999449 + 3 NA intron (NM_177980, intron 13 of 17) intron (NM_177980, intron 13 of 17) 2852 NM_001348204 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 520-238 chr5 82896540 82896760 + 3 NA Intergenic AluSc8|SINE|Alu -36814 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 374-315 chr5 101908454 101908727 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger 387694 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 289-167 chr16 56000930 56001090 + 3 NA Intergenic Intergenic -44979 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 457-67 chr14 53693989 53694157 + 3 NA Intergenic Intergenic 254411 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 697 chr1 159515679 159516200 + 3 NA Intergenic LTR68|LTR|ERV1 20068 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 492-164 chr22 22187458 22187675 + 3 NA Intergenic Intergenic -57220 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 754-84 chr9 20307296 20307650 + 3 NA Intergenic Intergenic 103765 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 482-54 chr11 81174670 81174912 + 3 NA Intergenic Intergenic -411988 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 344-332 chr3 132287244 132287427 + 3 NA Intergenic LTR23|LTR|ERV1 -30072 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 336-395 chr4 33685734 33685906 + 3 NA Intergenic Intergenic 354073 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 347-42 chr10 16075962 16076184 + 3 NA Intergenic Intergenic -215540 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 865-5 chr10 31555475 31555926 + 3 NA Intergenic L1MCa|LINE|L1 -155945 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 419-215 chr4 143116206 143116403 + 3 NA Intergenic Intergenic 68557 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 660-56 chr21 22691794 22692147 + 3 NA Intergenic Intergenic -387314 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 297-420 chr6 149603913 149604054 + 3 NA intron (NM_007044, intron 5 of 10) intron (NM_007044, intron 5 of 10) 10367 NR_077247 645958 Hs.632614 NR_077247 RPS18P9 RPS18_6_767 ribosomal protein S18 pseudogene 9 pseudo 504-275 chr9 25428534 25428777 + 3 NA Intergenic L1PA13|LINE|L1 250203 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 694-28 chr12 112912887 112913279 + 3 NA intron (NM_002534, intron 3 of 4) L1MEg|LINE|L1 6121 NM_016816 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 718-12 chr10 106915920 106916407 + 3 NA intron (NM_001206569, intron 2 of 25) L2a|LINE|L2 248543 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 216-245 chr4 54336043 54336154 + 3 NA intron (NR_147160, intron 1 of 1) intron (NR_147160, intron 1 of 1) 3206 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 293-128 chr15 33135248 33135358 + 3 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 59411 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 362-342 chr5 31368951 31369160 + 3 NA Intergenic Intergenic 163038 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 387-117 chr15 62831699 62831900 + 3 NA intron (NM_015059, intron 51 of 55) intron (NM_015059, intron 51 of 55) 7842 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 938-21 chr5 29717080 29717555 + 3 NA Intergenic L1MEd|LINE|L1 -163243 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 533-172 chr5 17837077 17837397 + 3 NA intron (NR_134286, intron 2 of 7) L1PA11|LINE|L1 29963 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 326-362 chr3 189899085 189899244 + 3 NA Intergenic Looper|DNA|PiggyBac 69242 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 606-111 chr4 31537988 31538212 + 3 NA intron (NR_149121, intron 1 of 2) L1M2|LINE|L1 31556 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 446-280 chr7 75551339 75551551 + 3 NA intron (NM_005338, intron 22 of 30) AluSz|SINE|Alu -23322 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 730-88 chrX 64946676 64947106 + 3 NA intron (NM_001178032, intron 1 of 4) L1MD|LINE|L1 29559 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 713-49 chr21 24694346 24694668 + 3 NA Intergenic Intergenic -146043 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 729-34 chr2 16048615 16049039 + 3 NA Intergenic Intergenic -1600 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 436-193 chr3 116629328 116629532 + 3 NA Intergenic L1MA3|LINE|L1 76957 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 612-19 chr10 78147493 78147905 + 3 NA Intergenic Intergenic -100926 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 568-66 chr15 91836753 91837084 + 3 NA Intergenic L1MC5|LINE|L1 -16790 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 689-18 chr12 96430972 96431376 + 3 NA Intergenic MER21A|LTR|ERVL -30735 NM_001170464 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 523-234 chr5 160577061 160577387 + 3 NA intron (NM_001366652, intron 23 of 24) MLT1L|LTR|ERVL-MaLR 91872 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 317-116 chr12 126901434 126901569 + 3 NA Intergenic Intergenic -26811 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 1006-28 chr7 46961580 46962009 + 3 NA Intergenic L1PA17|LINE|L1 -264672 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 429-117 chr17 21898233 21898461 + 3 NA Intergenic (ATGGAATGGA)n|Simple_repeat|Simple_repeat 205824 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 573-215 chrX 152262202 152262415 + 3 NA intron (NM_000808, intron 4 of 9) THE1C-int|LTR|ERVL-MaLR -123730 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 520-228 chr5 35074664 35074969 + 3 NA intron (NM_001204314, intron 2 of 6) intron (NM_001204314, intron 2 of 6) -26867 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 723-62 chr5 174384310 174384714 + 3 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 48158 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 438-150 chr20 54545615 54545793 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 70111 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 503-79 chr12 114124036 114124255 + 3 NA Intergenic Intergenic 117625 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 548-99 chr18 47705410 47705769 + 3 NA Intergenic L1M6|LINE|L1 225070 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 516-229 chr6 124528820 124529064 + 3 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 245937 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 433-308 chr9 135731641 135731939 + 3 NA intron (NM_020822, intron 2 of 30) HAL1b|LINE|L1 29605 NM_020822 57582 Hs.104950 NM_020822 ENSG00000107147 KCNT1 EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2 potassium sodium-activated channel subfamily T member 1 protein-coding 794-6 chr1 226969182 226969563 + 3 NA intron (NM_020247, intron 4 of 14) AluSc8|SINE|Alu 29078 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 595-38 chr12 29440843 29441073 + 3 NA intron (NM_001353179, intron 25 of 25) LTR86A1|LTR|ERVL 51664 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 455-236 chr6 43584272 43584509 + 3 NA intron (NM_001291969, intron 2 of 8) intron (NM_001291969, intron 2 of 8) 8205 NM_001291970 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 339-489 chr6 46031629 46031799 + 3 NA intron (NM_001370649, intron 1 of 5) L1ME4a|LINE|L1 -15825 NM_001256023 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 682-43 chr18 75574322 75574723 + 3 NA Intergenic HERV16-int|LTR|ERVL 137881 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 507-126 chr2 81437106 81437396 + 3 NA Intergenic Intergenic 29695 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 565-177 chr8 43610717 43611069 + 3 NA Intergenic ALR/Alpha|Satellite|centr 318451 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 368-148 chr14 70274308 70274512 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -26609 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 394-39 chr10 39301237 39301485 + 3 NA Intergenic ALR/Alpha|Satellite|centr 604765 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 850-36 chr5 19358239 19358734 + 3 NA Intergenic Intergenic 527786 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 427-39 chr11 93076338 93076572 + 3 NA Intergenic Intergenic 106832 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 912-2 chr1 40101604 40102105 + 3 NA Intergenic Intergenic -4384 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 377-93 chr12 59918793 59919043 + 3 NA Intergenic L1ME1|LINE|L1 229548 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 618-72 chr20 42739636 42740016 + 3 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 54343 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 629-57 chr19 28987075 28987499 + 3 NA Intergenic L1MC4a|LINE|L1 -15268 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 569-26 chr10 59443044 59443409 + 3 NA Intergenic L1MA7|LINE|L1 -80045 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 464-56 chr14 39844270 39844590 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie -411930 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 581-57 chr17 50344711 50345005 + 3 NA Intergenic Intergenic -1268 NR_110010 64132 Hs.463416 NM_022167 ENSG00000015532 XYLT2 PXYLT2|SOS|XT-II|XT2|xylT-II xylosyltransferase 2 protein-coding 225-9 chr1 155198577 155198681 + 3 NA intron (NM_001252608, intron 14 of 20) intron (NM_001252608, intron 14 of 20) 3452 NR_030281 693235 NR_030281 ENSG00000284586 MIR92B MIRN92B|hsa-mir-92b|mir-92b microRNA 92b ncRNA 933-35 chr6 20986392 20987072 + 3 NA intron (NM_017774, intron 10 of 15) intron (NM_017774, intron 10 of 15) 452275 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 697-67 chr7 32107664 32108091 + 3 NA intron (NM_001322059, intron 3 of 17) L1MCa|LINE|L1 -36441 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 523-34 chr10 64203286 64203524 + 3 NA Intergenic Intergenic -622123 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 479-283 chrX 96569996 96570323 + 3 NA Intergenic Intergenic -114504 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 423-82 chr14 95829955 95830216 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -46307 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 706-63 chr6 51079748 51080099 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 261052 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 375-268 chr3 106581070 106581292 + 3 NA Intergenic L2c|LINE|L2 659457 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 384-172 chr2 83414501 83414744 + 3 NA Intergenic Intergenic -108192 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 421-259 chr6 61761506 61761664 + 3 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 187455 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 970-22 chr9 80761478 80762053 + 3 NA Intergenic Intergenic 786742 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 350-469 chr7 11299667 11299815 + 3 NA Intergenic Intergenic 325869 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 561-177 chr6 164258482 164258751 + 3 NA Intergenic Intergenic 563447 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 524-93 chr17 83143174 83143356 + 3 NA Intergenic Zaphod3|DNA|hAT-Tip100 62119 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 255-241 chr21 34262640 34262759 + 3 NA Intergenic Intergenic 82022 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 905-3 chr1 67999997 68000549 + 3 NA intron (NR_040077, intron 1 of 9) L1MDb|LINE|L1 51358 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 566-147 chr4 119717229 119717536 + 3 NA Intergenic L1PB1|LINE|L1 87133 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 568-155 chr4 175209545 175209917 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 291373 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 647-35 chr16 63741404 63741764 + 3 NA Intergenic L1MC3|LINE|L1 1380479 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 536-251 chr9 74135715 74135953 + 3 NA Intergenic L1MD2|LINE|L1 -235697 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 594-10 chr1 181611747 181612046 + 3 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 128379 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 444-116 chr2 56247283 56247493 + 3 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -61618 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 376-126 chr15 94869465 94869679 + 3 NA Intergenic L3|LINE|CR1 14209 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 606-2 chr1 10521474 10521736 + 3 NA intron (NM_004565, intron 2 of 8) MIR|SINE|MIR 46655 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 641-71 chr21 30695435 30695766 + 3 NA Intergenic AluSg|SINE|Alu 23177 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 260-325 chr4 153851595 153851696 + 3 NA Intergenic Intergenic -62562 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 806-9 chr12 14305505 14305983 + 3 NA Intergenic LTR50|LTR|ERVL -59888 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 829-19 chr18 37110734 37111074 + 3 NA intron (NR_136303, intron 8 of 13) intron (NR_136303, intron 8 of 13) -163556 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 490-222 chr5 94803102 94803401 + 3 NA intron (NM_001002796, intron 17 of 22) intron (NM_001002796, intron 17 of 22) 184582 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 414-150 chr2 68681913 68682090 + 3 NA Intergenic L2a|LINE|L2 38413 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 512-264 chr8 19735823 19736108 + 3 NA intron (NM_001354488, intron 1 of 9) intron (NM_001354488, intron 1 of 9) 21118 NM_001354490 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 412-71 chr12 47643074 47643371 + 3 NA Intergenic L1MDa|LINE|L1 62808 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 357-114 chr14 49424496 49424748 + 3 NA Intergenic Intergenic 161758 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 220-72 chr11 102991789 102991882 + 3 NA Intergenic L2c|LINE|L2 -36103 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 425-45 chr10 111897617 111897789 + 3 NA Intergenic L1MEc|LINE|L1 286062 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 500-113 chr18 10988369 10988582 + 3 NA intron (NM_022068, intron 2 of 51) L1MA10|LINE|L1 160287 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 872-7 chr10 17263951 17264325 + 3 NA Intergenic MER11A|LTR|ERVK -34153 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 198-141 chr2 185398338 185398474 + 3 NA Intergenic Intergenic -231334 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 459-289 chr8 16511261 16511522 + 3 NA Intergenic Intergenic -318600 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 232-364 chr7 113676733 113676811 + 3 NA Intergenic Intergenic 242237 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 353-82 chr11 50661581 50661778 + 3 NA Intergenic ALR/Alpha|Satellite|centr 252532 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 497-257 chr7 27556156 27556424 + 3 NA intron (NM_152740, intron 4 of 7) L1MEd|LINE|L1 -59684 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 524-65 chr14 70522072 70522471 + 3 NA TTS (NM_003814) TTS (NM_003814) 12733 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 180-95 chr20 59212033 59212157 + 3 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 21075 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 288-158 chr18 36908725 36908879 + 3 NA intron (NR_134585, intron 2 of 3) intron (NR_134585, intron 2 of 3) 15012 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 528-262 chr9 96190221 96190591 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -56057 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 767-45 chr6 155501244 155501595 + 3 NA Intergenic Intergenic -13425 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 511-92 chr17 62837289 62837528 + 3 NA Intergenic L1MD1|LINE|L1 28906 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 437-83 chr14_GL000225v1_random 13808 14081 + 3 NA NA BSR/Beta|Satellite|Satellite NA NA 446-293 chr8 9867455 9867701 + 3 NA Intergenic Intergenic 35751 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 530-120 chr2 49961903 49962150 + 3 NA intron (NM_001330093, intron 21 of 22) FLAM_A|SINE|Alu 12177 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 191-23 chr1 240529595 240529661 + 3 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 82527 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 323-324 chr3 38470925 38471074 + 3 NA intron (NM_001106, intron 1 of 10) L1MEd|LINE|L1 -16179 NR_028389 100128640 Hs.570596 NR_028389 ENSG00000229589 ACVR2B-AS1 - ACVR2B antisense RNA 1 ncRNA 784-15 chr11 95237126 95237499 + 3 NA Intergenic MIR|SINE|MIR -4837 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 499-218 chr6 9005965 9006150 + 3 NA Intergenic L2c|LINE|L2 353848 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 322-133 chr12 108189187 108189383 + 3 NA intron (NM_001304447, intron 2 of 9) LTR16C|LTR|ERVL 57499 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 442-78 chr14 62391547 62391742 + 3 NA Intergenic L1ME2|LINE|L1 -251671 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 471-171 chr3 104718950 104719118 + 3 NA Intergenic Intergenic -647679 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 497-16 chr10 26445709 26445994 + 3 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 7510 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 436-18 chr1 171268413 171268595 + 3 NA intron (NM_002021, intron 3 of 8) intron (NM_002021, intron 3 of 8) 10581 NM_001282692 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 1033 chr10 88064153 88064910 + 3 NA Intergenic Intergenic 200906 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 436-301 chr8 79555456 79555666 + 3 NA Intergenic L1PA13|LINE|L1 -55556 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 386-99 chr14 60044558 60044838 + 3 NA intron (NR_075071, intron 29 of 32) L1M2|LINE|L1 -47213 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 249-41 chr10 30923898 30923995 + 3 NA intron (NM_001143771, intron 2 of 7) L1MD|LINE|L1 75571 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 364-64 chr10 64341482 64341697 + 3 NA Intergenic Intergenic -483939 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 228-169 chr2 95248718 95248868 + 3 NA Intergenic MER31-int|LTR|ERV1 -25656 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 474-125 chr19 57112620 57112875 + 3 NA Intergenic Intergenic -7394 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 386-68 chr12 9137016 9137285 + 3 NA Intergenic L1MB1|LINE|L1 -20921 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 619-22 chr10 91097136 91097523 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 51521 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 271-177 chr18 12579424 12579628 + 3 NA intron (NM_020148, intron 2 of 15) L1MB4|LINE|L1 77206 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 481-163 chr2 211146298 211146476 + 3 NA Intergenic Intergenic 528816 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 305-296 chr2 231287444 231287650 + 3 NA intron (NM_001352757, intron 16 of 19) (GCTTT)n|Simple_repeat|Simple_repeat -75161 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 497-78 chr14 70303846 70304028 + 3 NA Intergenic LTR8A|LTR|ERV1 55746 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 426-91 chr16 10339342 10339575 + 3 NA Intergenic AluJr|SINE|Alu -46603 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 329-92 chr11 37253655 37253801 + 3 NA Intergenic MIR|SINE|MIR -655449 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 1598-3 chr19 57691552 57692356 + 3 NA Intergenic AluJo|SINE|Alu 9977 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 493-314 chr9 90340325 90340549 + 3 NA intron (NR_109795, intron 2 of 2) intron (NR_109795, intron 2 of 2) 93052 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 758-55 chr3 104652160 104652536 + 3 NA Intergenic L1MA7|LINE|L1 -714365 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 497-65 chr12 127512396 127512589 + 3 NA Intergenic L1MEc|LINE|L1 123975 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 753-43 chr3 187484823 187485177 + 3 NA Intergenic Intergenic 37954 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 351-334 chr4 23205372 23205605 + 3 NA Intergenic L1PA13|LINE|L1 491399 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 484-171 chr3 64620754 64620927 + 3 NA intron (NM_001318781, intron 18 of 38) intron (NM_001318781, intron 18 of 38) 59494 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 675-20 chr12 33843103 33843390 + 3 NA Intergenic L1PA13|LINE|L1 -179250 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 398-33 chr10 33229194 33229445 + 3 NA intron (NM_001244973, intron 6 of 16) intron (NM_001244973, intron 6 of 16) 105348 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 474-302 chr8 141663510 141663835 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 122641 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 552-126 chr21 27442579 27442969 + 3 NA Intergenic MLT2A2|LTR|ERVL -279605 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 622-70 chr2 182805717 182806063 + 3 NA Intergenic Intergenic 60747 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 445-138 chr2 178719559 178719759 + 3 NA exon (NM_001267550, exon 82 of 363) exon (NM_001267550, exon 82 of 363) -57267 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 463-209 chr4 57733777 57734085 + 3 NA Intergenic Intergenic 308059 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 804-50 chr5 3479887 3480484 + 3 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) 23819 NR_104618 102467075 Hs.652949 NR_104618 ENSG00000250716 LINC01017 - long intergenic non-protein coding RNA 1017 ncRNA 488-23 chr10 34079992 34080255 + 3 NA Intergenic AluSx|SINE|Alu -307443 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 404-164 chr2 74584131 74584350 + 3 NA intron (NM_001321739, intron 4 of 10) intron (NM_001321739, intron 4 of 10) 30080 NM_001318866 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 509-256 chr8 110488286 110488525 + 3 NA Intergenic L1MA1|LINE|L1 -512634 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 338-318 chr22 37819884 37820077 + 3 NA Intergenic Intergenic -3402 NM_003614 8484 Hs.158353 NM_003614 ENSG00000128310 GALR3 - galanin receptor 3 protein-coding 452-204 chr5 7555989 7556167 + 3 NA intron (NM_020546, intron 3 of 24) MER3|DNA|hAT-Charlie 159940 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 686-5 chr1 79250141 79250638 + 3 NA Intergenic Intergenic -243659 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 295-269 chr21 28574987 28575177 + 3 NA Intergenic Intergenic 35764 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 404-229 chr4 46892544 46892830 + 3 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 16558 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 380-375 chr7 125334616 125334783 + 3 NA intron (NR_110188, intron 5 of 8) intron (NR_110188, intron 5 of 8) -70408 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 443-177 chr20 42446907 42447127 + 3 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -238466 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 518-253 chr6 27450427 27450774 + 3 NA TTS (NM_001318893) TTS (NM_001318893) 22298 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 1046-5 chr15 24798240 24798641 + 3 NA Intergenic Intergenic -25168 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 732-97 chr8 141482903 141483442 + 3 NA intron (NR_102364, intron 6 of 26) L1ME2|LINE|L1 24057 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 694-14 chr10 56576574 56576868 + 3 NA Intergenic Intergenic -215448 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 496-310 chrX 73351008 73351383 + 3 NA Intergenic L1PA15|LINE|L1 -96059 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 336-469 chr5 144230798 144230934 + 3 NA intron (NM_001370487, intron 2 of 2) L2a|LINE|L2 25475 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 480-137 chr2 37203210 37203457 + 3 NA 3' UTR (NM_001322373, exon 6 of 6) 3' UTR (NM_001322373, exon 6 of 6) 6837 NR_136316 100505876 Hs.666958 NM_001322373 ENSG00000218739 CEBPZOS CEBPZ-AS1 CEBPZ opposite strand protein-coding 435-2 chr1 13848399 13848686 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 99127 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 714-45 chr20 42373055 42373440 + 3 NA intron (NM_133170, intron 9 of 31) MIRb|SINE|MIR -312236 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 661-4 chr1 107270867 107271221 + 3 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 122975 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 563-43 chr12 118876114 118876408 + 3 NA Intergenic Intergenic -42725 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 525-208 chr5 144573402 144573591 + 3 NA Intergenic Intergenic 368105 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 1058-2 chr1 238624632 238625123 + 3 NA Intergenic L2a|LINE|L2 -138860 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 659-63 chr20 42188102 42188481 + 3 NA intron (NM_133170, intron 17 of 31) L2a|LINE|L2 -497192 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 671-80 chr5 94223650 94224031 + 3 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -112141 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 880-31 chr5 5963468 5963836 + 3 NA Intergenic Tigger4a|DNA|TcMar-Tigger 373640 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 428-331 chrX 113327011 113327251 + 3 NA intron (NR_110399, intron 3 of 3) intron (NR_110399, intron 3 of 3) 284404 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 815-35 chr5 107648162 107648686 + 3 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 22513 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 424-119 chr19 56529510 56529775 + 3 NA 3' UTR (NM_020813, exon 5 of 5) 3' UTR (NM_020813, exon 5 of 5) -9306 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 544-180 chr5 74171804 74172087 + 3 NA Intergenic Intergenic 136380 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 325-363 chr3 131736245 131736467 + 3 NA intron (NM_130808, intron 2 of 15) AluSc|SINE|Alu -233385 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 585-54 chr16 73175939 73176190 + 3 NA Intergenic Intergenic -31617 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 410-79 chr13 72514464 72514647 + 3 NA Intergenic Intergenic 213074 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 655-75 chr21 31465077 31465532 + 3 NA intron (NM_003253, intron 1 of 28) AluJr|SINE|Alu 93783 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 387-341 chr7 49803171 49803342 + 3 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 27923 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 570-132 chr3 35088871 35089154 + 3 NA intron (NR_110817, intron 2 of 3) L1PB1|LINE|L1 305011 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 691-58 chr4 99291995 99292335 + 3 NA intron (NR_037884, intron 7 of 9) intron (NR_037884, intron 7 of 9) -1180 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 335-146 chr13 106231665 106231814 + 3 NA Intergenic Intergenic -144825 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 338-387 chr4 99338014 99338192 + 3 NA intron (NR_133005, intron 8 of 8) L1ME4a|LINE|L1 14643 NR_133005 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 461-226 chr5 175423390 175423649 + 3 NA Intergenic L1MC3|LINE|L1 20663 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 486-161 chr2 196396108 196396329 + 3 NA intron (NM_020760, intron 2 of 28) L1MB3|LINE|L1 -34041 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 418-74 chr14 80394948 80395173 + 3 NA intron (NR_038355, intron 6 of 8) intron (NR_038355, intron 6 of 8) -164003 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 619-90 chr4 26617549 26617816 + 3 NA intron (NM_018317, intron 3 of 20) intron (NM_018317, intron 3 of 20) 33598 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 671-33 chr14 76682908 76683261 + 3 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -78384 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 648-59 chr18 22652525 22652842 + 3 NA Intergenic L1MB7|LINE|L1 134154 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 722-2 chr1 41472752 41473057 + 3 NA Intergenic MER34A|LTR|ERV1 11779 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 672-117 chr9 5958807 5959272 + 3 NA intron (NM_001017969, intron 3 of 7) intron (NM_001017969, intron 3 of 7) -48787 NR_039811 100616288 NR_039811 ENSG00000263575 MIR4665 mir-4665 microRNA 4665 ncRNA 657-108 chr9 113835552 113835918 + 3 NA Intergenic Intergenic -40547 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 1520-4 chr7 62704428 62705244 + 3 NA Intergenic ALR/Alpha|Satellite|centr 599220 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 466-143 chr2 133776401 133776563 + 3 NA Intergenic Intergenic -208019 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 1065-20 chr9 134953520 134954290 + 3 NA Intergenic L1MB8|LINE|L1 -35993 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 522-31 chr10 117767907 117768137 + 3 NA Intergenic L1ME3|LINE|L1 -222954 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 271-463 chr8 130637494 130637702 + 3 NA Intergenic Intergenic -193924 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 576-176 chr8 132272969 132273182 + 3 NA intron (NM_004519, intron 1 of 14) THE1B-int|LTR|ERVL-MaLR -167810 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 449-284 chr8 124704216 124704488 + 3 NA intron (NM_001282971, intron 1 of 14) intron (NM_001282971, intron 1 of 14) 24121 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 453-274 chr8 43932152 43932448 + 3 NA Intergenic ALR/Alpha|Satellite|centr 639858 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 303-20 chr1 219371618 219371800 + 3 NA Intergenic MER57B2|LTR|ERV1 185615 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 314-604 chr9 34798955 34799157 + 3 NA Intergenic L1PA17|LINE|L1 39530 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 586-66 chr18 74417739 74417992 + 3 NA Intergenic Intergenic 8417 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 454-261 chr5 104357306 104357544 + 3 NA Intergenic Intergenic -742049 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 454-57 chr11 91179608 91179828 + 3 NA Intergenic Intergenic -310516 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 395-171 chr2 80186541 80186695 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 118134 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 493-177 chr20 19419076 19419289 + 3 NA intron (NM_020689, intron 2 of 16) L1MC5|LINE|L1 -134586 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 659-128 chr9 109113625 109113873 + 3 NA intron (NM_032012, intron 1 of 17) intron (NM_032012, intron 1 of 17) 6198 NM_032012 23731 Hs.308074 NM_032012 ENSG00000106771 TMEM245 C9orf5|CG-2|CG2 transmembrane protein 245 protein-coding 373-188 chr2 34841592 34841841 + 3 NA Intergenic Intergenic 164159 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 769-36 chr21 29232157 29232791 + 3 NA intron (NR_027072, intron 1 of 1) MIR|SINE|MIR 38980 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 477-53 chr11 23998808 23999067 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -498116 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 942-26 chr4 267362 267995 + 3 NA Intergenic Intergenic 37796 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 506-110 chr17 70587741 70588005 + 3 NA Intergenic Intergenic 418338 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 388-205 chr21 44822467 44822633 + 3 NA Intergenic L1MEg|LINE|L1 -4421 NM_001286416 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 524-225 chr6 147719550 147719779 + 3 NA Intergenic Intergenic 210974 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 381-364 chr7 95531281 95531474 + 3 NA intron (NM_016116, intron 3 of 4) intron (NM_016116, intron 3 of 4) 45434 NM_016116 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 562-234 chrX 85433810 85434089 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -54284 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 517-198 chr4 90868978 90869412 + 3 NA intron (NM_001145065, intron 8 of 10) L1MA2|LINE|L1 634164 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 518-299 chr8 86025201 86025504 + 3 NA Intergenic Intergenic 44316 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 374-361 chr7 49129499 49129686 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 205045 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 874-6 chr11 82176977 82177549 + 3 NA intron (NR_120571, intron 3 of 7) X6B_LINE|LINE|CR1 226650 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 386-134 chr18 2388457 2388705 + 3 NA Intergenic L1ME1|LINE|L1 182924 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 314-613 chr9 98351485 98351692 + 3 NA intron (NM_005458, intron 13 of 18) L1MA5|LINE|L1 -95939 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 271-374 chr6 45372517 45372639 + 3 NA TTS (NR_103533) TTS (NR_103533) 4940 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 506-21 chr1 193919910 193920101 + 3 NA Intergenic Intergenic 615260 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 512-128 chr2 123007235 123007514 + 3 NA Intergenic L1M2|LINE|L1 66107 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 579-42 chr14 81943600 81943943 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR -200633 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 542-71 chr16 3384141 3384335 + 3 NA intron (NM_001284527, intron 6 of 6) intron (NM_001284527, intron 6 of 6) -11570 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 494-109 chr18 55786727 55787025 + 3 NA Intergenic Intergenic -5151 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 350-524 chr8 106243335 106243482 + 3 NA Intergenic L1MA4|LINE|L1 -26770 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 231-133 chr18 8100696 8100832 + 3 NA intron (NM_002845, intron 11 of 30) MIRc|SINE|MIR 266270 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 396-32 chr1 219752711 219752951 + 3 NA Intergenic L2a|LINE|L2 -139686 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 446-45 chr10 62143166 62143320 + 3 NA Intergenic L1PREC2|LINE|L1 93886 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 853-20 chr2 205455518 205455933 + 3 NA intron (NM_057177, intron 19 of 21) L1MD2|LINE|L1 -226775 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 372-410 chr5 114610527 114610688 + 3 NA intron (NR_130785, intron 3 of 12) L1MD2|LINE|L1 34566 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 421-122 chr19 40012392 40012614 + 3 NA intron (NM_178544, intron 6 of 6) intron (NM_178544, intron 6 of 6) 15443 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 965-15 chr3 128454006 128454537 + 3 NA Intergenic Intergenic -9323 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 844-2 chr1 94390640 94391179 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -27468 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 237-267 chr4 81959032 81959151 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie 414900 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 520-163 chr2 230378771 230379108 + 3 NA intron (NM_001352892, intron 7 of 18) L1ME1|LINE|L1 -37217 NM_001206702 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 500-146 chr2 119018076 119018441 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 76089 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 506-251 chr6 51684624 51684842 + 3 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 62863 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 634-9 chr1 205879746 205880111 + 3 NA intron (NR_046097, intron 1 of 2) L1PB4|LINE|L1 -10092 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 844-36 chr2 83722490 83723022 + 3 NA Intergenic Intergenic 199942 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 496-276 chr8 21529128 21529298 + 3 NA Intergenic L1MEc|LINE|L1 230974 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 433-256 chr6 159373319 159373583 + 3 NA Intergenic Intergenic -10080 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 897-41 chrX 99417827 99418294 + 3 NA Intergenic Intergenic 992213 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 628-105 chr5 64389040 64389287 + 3 NA Intergenic L1ME1|LINE|L1 -116852 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 575-31 chr11 55696165 55696389 + 3 NA Intergenic Intergenic 31110 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 682-80 chr5 87238023 87238290 + 3 NA intron (NR_130914, intron 2 of 2) L1ME3Cz|LINE|L1 1045 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 456-2 chr1 51426045 51426242 + 3 NA intron (NM_001981, intron 12 of 24) intron (NM_001981, intron 12 of 24) -4048 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 575-74 chr18 61961470 61961780 + 3 NA Intergenic AluSx|SINE|Alu -68618 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 343-464 chr6 50564621 50564766 + 3 NA Intergenic L1M5|LINE|L1 -148851 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 581-99 chr3 79879393 79879729 + 3 NA Intergenic Intergenic -111563 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 1080-15 chr2 107435627 107436288 + 3 NA Intergenic L1M4|LINE|L1 -86432 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 537-224 chr7 3226430 3226648 + 3 NA Intergenic L1PB2|LINE|L1 -67966 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 357-188 chr2 29637442 29637645 + 3 NA intron (NM_004304, intron 3 of 28) AluSz|SINE|Alu -162166 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 390-435 chrX 96993982 96994199 + 3 NA intron (NM_007309, intron 17 of 26) L2c|LINE|L2 110182 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 782-33 chr2 190013010 190013425 + 3 NA Intergenic L1MA7|LINE|L1 49512 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 632-62 chr2 183387698 183388020 + 3 NA Intergenic L1PREC2|LINE|L1 263416 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 1768 chr16 31915043 31916176 + 3 NA exon (NM_003414, exon 4 of 4) exon (NM_003414, exon 4 of 4) 41802 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 587-124 chr4 96775941 96776222 + 3 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 465378 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 420-6 chr1 48956981 48957220 + 3 NA intron (NM_001323575, intron 5 of 12) L1ME3Cz|LINE|L1 -180131 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 472-96 chr15 27012644 27012845 + 3 NA intron (NM_001270873, intron 2 of 5) L2a|LINE|L2 41563 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 466-273 chr8 119172013 119172309 + 3 NA Intergenic Intergenic -36202 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 359-333 chr3 143375033 143375190 + 3 NA intron (NM_173653, intron 13 of 15) intron (NM_173653, intron 13 of 15) 32865 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 385-164 chr2 16846354 16846545 + 3 NA Intergenic Intergenic -180615 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 570-210 chr9 96180801 96181162 + 3 NA Intergenic Intergenic -64570 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 462-127 chr19 53578339 53578589 + 3 NA 3' UTR (NM_018555, exon 7 of 7) 3' UTR (NM_018555, exon 7 of 7) 23157 NM_001079907 55422 Hs.185674 NM_018555 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 992-8 chr13 52066944 52067543 + 3 NA intron (NM_199289, intron 21 of 21) intron (NM_199289, intron 21 of 21) 42552 NM_021645 9724 Hs.512963 NM_021645 ENSG00000253797 UTP14C 2700066J21Rik|KIAA0266|UTP14B UTP14C small subunit processome component protein-coding 573-134 chr4 172382409 172382772 + 3 NA intron (NM_001034845, intron 5 of 12) L1MB7|LINE|L1 306327 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 354-54 chr10 66896465 66896613 + 3 NA intron (NR_111911, intron 6 of 6) intron (NR_111911, intron 6 of 6) -29497 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 400-286 chr5 68788366 68788576 + 3 NA Intergenic L1ME4a|LINE|L1 241456 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 738-35 chr2 82097526 82097885 + 3 NA Intergenic Intergenic -630759 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 292-103 chr12 50864402 50864567 + 3 NA intron (NM_182559, intron 3 of 4) L1ME1|LINE|L1 21558 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 540-155 chr4 42008526 42008905 + 3 NA intron (NM_006345, intron 2 of 17) L2c|LINE|L2 18185 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 485-37 chr10 107289921 107290091 + 3 NA Intergenic AluSx|SINE|Alu -125300 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 510-220 chr5 24952178 24952463 + 3 NA Intergenic L1MC4|LINE|L1 -111737 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 623-104 chr5 40177425 40177700 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 125271 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 1003-17 chr5 148527865 148528376 + 3 NA intron (NM_001040172, intron 3 of 5) intron (NM_001040172, intron 3 of 5) 108941 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 279-340 chr5 131864109 131864263 + 3 NA intron (NM_001303622, intron 9 of 12) L1M2|LINE|L1 -67169 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 469-242 chr6 48954677 48954925 + 3 NA Intergenic Intergenic 508452 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 803-52 chr7 50221629 50222139 + 3 NA Intergenic Intergenic -82180 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 312-208 chr18 69276244 69276455 + 3 NA Intergenic MER65-int|LTR|ERV1 -124539 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 516-67 chr14 26689705 26689894 + 3 NA intron (NR_147061, intron 2 of 6) intron (NR_147061, intron 2 of 6) 91152 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 378-109 chr12 94217816 94218020 + 3 NA intron (NM_005761, intron 5 of 30) L2a|LINE|L2 -44603 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 571-110 chr3 107181858 107182071 + 3 NA intron (NR_028303, intron 1 of 3) L1MB7|LINE|L1 58674 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 401-321 chr8 78224109 78224363 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -292104 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 1094-5 chr17 13898894 13899443 + 3 NA Intergenic Intergenic -125330 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 455-301 chr9 103857686 103857914 + 3 NA Intergenic Intergenic -141909 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 1079-10 chr5 109577584 109578162 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -111493 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 540-20 chr1 175055827 175056120 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -11860 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 607-72 chr2 51291700 51291993 + 3 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 259245 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 484-243 chr6 144726367 144726574 + 3 NA intron (NM_007124, intron 52 of 73) L2c|LINE|L2 320815 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 420-39 chr10 76374489 76374653 + 3 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -513473 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 311-388 chr4 110833926 110834065 + 3 NA Intergenic L3|LINE|CR1 26652 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 552-137 chr3 79632853 79633157 + 3 NA intron (NM_002941, intron 1 of 30) L1M4|LINE|L1 125118 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 516-247 chr8 59759286 59759497 + 3 NA Intergenic Intergenic 522009 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 488-196 chr4 125660064 125660280 + 3 NA Intergenic Intergenic 152913 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 791-34 chr2 16053276 16053724 + 3 NA intron (NR_126559, intron 1 of 3) intron (NR_126559, intron 1 of 3) 3073 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 595-27 chr11 25841543 25841778 + 3 NA Intergenic MLT1E1|LTR|ERVL-MaLR -347463 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 454-103 chr15 33357577 33357798 + 3 NA intron (NM_001243996, intron 1 of 102) MER41B|LTR|ERV1 46720 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 598-38 chr12 128228680 128229042 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -38542 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 430-140 chr2 34465216 34465525 + 3 NA Intergenic Intergenic -212187 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 515-71 chr14 68225576 68225892 + 3 NA intron (NM_133509, intron 7 of 10) Plat_L3|LINE|CR1 402142 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 444-144 chr20 60971132 60971340 + 3 NA Intergenic L1ME2|LINE|L1 -107828 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 361-215 chr2 65761382 65761652 + 3 NA Intergenic L1MA2|LINE|L1 -328918 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 414-301 chr7 29426033 29426213 + 3 NA intron (NM_001293072, intron 6 of 12) AluSg|SINE|Alu -53589 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 479-2 chr1 49535559 49535784 + 3 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -63586 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 438-63 chr12 18098112 18098375 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -8050 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 306-291 chr21 27441403 27441550 + 3 NA Intergenic Intergenic -280903 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 543-165 chr3 31359811 31360115 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -172962 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 188-89 chr2 17491374 17491484 + 3 NA Intergenic L1M4c|LINE|L1 27011 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 700-87 chr6 8345247 8345637 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 90103 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 379-117 chr17 12329635 12329839 + 3 NA Intergenic Intergenic -220231 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 1317-5 chr18 35256959 35257645 + 3 NA intron (NM_032347, intron 5 of 5) LTR16A1|LTR|ERVL 16268 NM_001135178 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 948-10 chr12 92394214 92394715 + 3 NA Intergenic Intergenic -27067 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 968-16 chr3 148179861 148180575 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 -100673 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 355-180 chr16 48735142 48735338 + 3 NA Intergenic MIR|SINE|MIR -125060 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 285-59 chr11 32156667 32156782 + 3 NA Intergenic L1MEi|LINE|L1 -12812 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 456-93 chr14 62281867 62282085 + 3 NA Intergenic LTR103b_Mam|LTR|ERV1? -142003 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 527-74 chr14 31699240 31699516 + 3 NA intron (NR_120408, intron 6 of 9) MIR|SINE|MIR -15191 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 450-98 chr15 101196683 101196941 + 3 NA intron (NM_014918, intron 2 of 2) FLAM_C|SINE|Alu 55236 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 747-11 chr11 84896630 84897163 + 3 NA intron (NM_001351274, intron 5 of 26) MER44A|DNA|TcMar-Tigger 26525 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 609-52 chr2 18034798 18035166 + 3 NA Intergenic Ricksha_0|DNA|MULE-MuDR 156315 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 813-18 chr17 83140894 83141433 + 3 NA Intergenic L1M5|LINE|L1 60017 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 467-207 chr4 86377724 86377898 + 3 NA intron (NM_002753, intron 1 of 13) MLT2A1|LTR|ERVL -6944 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 299-314 chr4 33163730 33163949 + 3 NA Intergenic Intergenic 812801 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 657-84 chr6 61386790 61387138 + 3 NA Intergenic ALR/Alpha|Satellite|centr -187166 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 747-58 chr6 38429852 38430253 + 3 NA intron (NM_001172418, intron 5 of 10) L3|LINE|CR1 -51544 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 508-60 chr14 60613182 60613434 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -25908 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 559-208 chrX 87411785 87412117 + 3 NA Intergenic Intergenic -105851 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 986-4 chr1 118652202 118652976 + 3 NA Intergenic Intergenic 335754 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 935-40 chr8 89044991 89045469 + 3 NA Intergenic L1ME3A|LINE|L1 712481 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 296-430 chr7 9865160 9865281 + 3 NA Intergenic Intergenic 230950 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 1267-2 chr14 19898772 19899574 + 3 NA Intergenic Intergenic -21434 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 476-110 chr17 34266826 34267114 + 3 NA Intergenic L1MB1|LINE|L1 -3251 NM_006273 6354 Hs.251526 NM_006273 ENSG00000108688 CCL7 FIC|MARC|MCP-3|MCP3|NC28|SCYA6|SCYA7 C-C motif chemokine ligand 7 protein-coding 488-278 chr8 129245524 129245690 + 3 NA Intergenic MIRb|SINE|MIR -4367 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 502-42 chr11 4779963 4780230 + 3 NA Intergenic L1ME3A|LINE|L1 -10158 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 531-174 chr4 46871198 46871406 + 3 NA intron (NM_130902, intron 1 of 2) L1PA14|LINE|L1 37943 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 626-60 chr2 21490632 21490868 + 3 NA Intergenic L1M6|LINE|L1 219902 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 567-101 chr20 60086045 60086387 + 3 NA Intergenic Intergenic -1470 NR_109917 729296 Hs.534781 NR_109916 LOC729296 - uncharacterized LOC729296 ncRNA 866-17 chr15 69666685 69667289 + 3 NA intron (NR_126437, intron 3 of 5) MER5A|DNA|hAT-Charlie 74787 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 486-112 chr17 53952075 53952338 + 3 NA Intergenic L1MA4A|LINE|L1 129279 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 627-36 chr15 91931899 91932253 + 3 NA intron (NR_135775, intron 2 of 10) MIRb|SINE|MIR 77772 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 417-27 chr10 32126066 32126241 + 3 NA Intergenic L1MA5A|LINE|L1 -69728 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 796-63 chrX 81741871 81742368 + 3 NA Intergenic L1PA16|LINE|L1 540017 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 760-67 chr6 69600473 69601028 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR 195716 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 482-204 chr5 104990751 104990984 + 3 NA Intergenic Intergenic -108607 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 612-50 chr18 7710558 7710861 + 3 NA intron (NM_002845, intron 1 of 30) L1PB|LINE|L1 143393 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 564-43 chr12 65735487 65735813 + 3 NA Intergenic L2c|LINE|L2 -88810 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 396-219 chr3 67262936 67263095 + 3 NA Intergenic LTR78B|LTR|ERV1 37551 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 1733-2 chr17 34869307 34870531 + 3 NA Intergenic L1ME3|LINE|L1 91541 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 561-118 chr22 26254268 26254508 + 3 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 84914 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 385-249 chr3 108525987 108526201 + 3 NA intron (NM_014981, intron 1 of 41) intron (NM_014981, intron 1 of 41) 3228 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 319-579 chr9 112995852 112995988 + 3 NA Intergenic Intergenic 16272 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 1187-6 chr2 107522380 107522957 + 3 NA Intergenic L1M5|LINE|L1 -6751 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 908-24 chr20 41752382 41753014 + 3 NA Intergenic Intergenic -134321 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 288-223 chr20 15965515 15965660 + 3 NA intron (NM_001351663, intron 12 of 17) A-rich|Low_complexity|Low_complexity 20295 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 700-22 chr12 76983025 76983349 + 3 NA Intergenic L1MA9|LINE|L1 82382 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 448-172 chr3 187636324 187636617 + 3 NA Intergenic Intergenic 33924 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 592-147 chr5 126259573 126259936 + 3 NA Intergenic L1M2|LINE|L1 25421 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 334-574 chr9 100559947 100560149 + 3 NA intron (NM_001198812, intron 7 of 9) intron (NM_001198812, intron 7 of 9) -18031 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 667-95 chr6 9190235 9190688 + 3 NA Intergenic Intergenic 538252 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 361-183 chr18 34206855 34207027 + 3 NA intron (NM_001353232, intron 1 of 9) L1MEf|LINE|L1 15529 NM_001282527 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 453-103 chr19 38742910 38743195 + 3 NA exon (NM_144691, exon 2 of 21).2 exon (NM_144691, exon 2 of 21).2 1422 NM_144691 147968 Hs.731775 NM_144691 ENSG00000182472 CAPN12 - calpain 12 protein-coding 375-162 chr17 12376545 12376705 + 3 NA Intergenic Intergenic -173343 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 660-88 chr5 157625129 157625438 + 3 NA TTS (NM_007017) TTS (NM_007017) 27137 NM_007017 11063 Hs.529462 NM_007017 ENSG00000039600 SOX30 - SRY-box transcription factor 30 protein-coding 445-46 chr12 14452786 14452977 + 3 NA intron (NM_181352, intron 6 of 14) L1M4|LINE|L1 67600 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 471-7 chr1 78766407 78766651 + 3 NA Intergenic (T)n|Simple_repeat|Simple_repeat 116698 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 772-52 chr8 71128131 71128500 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 228391 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 550-239 chr8 136474894 136475217 + 3 NA Intergenic Intergenic -55743 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 416-211 chr22 33418566 33418793 + 3 NA intron (NM_133642, intron 7 of 14) L2a|LINE|L2 17990 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 602-4 chr1 147410420 147410692 + 3 NA intron (NR_038423, intron 3 of 3) L1M4|LINE|L1 107319 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 466-286 chr8 138026527 138026711 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 56926 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 511-267 chr8 121843555 121843754 + 3 NA Intergenic Intergenic -202214 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 430-83 chr14 49655997 49656184 + 3 NA intron (NM_001348385, intron 10 of 18) AluYe5|SINE|Alu -20860 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 483-273 chr8 124001653 124001898 + 3 NA intron (NM_001039112, intron 12 of 40) intron (NM_001039112, intron 12 of 40) 39007 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 411-14 chr1 206147055 206147278 + 3 NA Intergenic Intergenic -29778 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 647-58 chr20 55975923 55976272 + 3 NA Intergenic MIR|SINE|MIR 29422 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 602-72 chr2 211142289 211142570 + 3 NA Intergenic L1PB|LINE|L1 524858 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 519-240 chr8 117493718 117493956 + 3 NA Intergenic L1PA14|LINE|L1 -26876 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 531-146 chr22 33422158 33422361 + 3 NA intron (NM_133642, intron 7 of 14) MER20B|DNA|hAT-Charlie 14410 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 462-189 chr3 187088572 187088856 + 3 NA Intergenic L1MA7|LINE|L1 49996 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 447-244 chr7 9748091 9748320 + 3 NA Intergenic L1MCa|LINE|L1 113935 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 392-346 chr9 27951370 27951541 + 3 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -377589 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 410-184 chr3 20808189 20808360 + 3 NA Intergenic Intergenic 465806 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 1711-3 chr7 33286435 33287534 + 3 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 157420 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 339-102 chr11 75052604 75052816 + 3 NA Intergenic L1M4|LINE|L1 44180 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 622-9 chr10 80575812 80576035 + 3 NA intron (NM_207372, intron 3 of 6) intron (NM_207372, intron 3 of 6) 35104 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 377-263 chr3 13285855 13286015 + 3 NA Intergenic Intergenic 134387 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 280-76 chr11 101769999 101770203 + 3 NA Intergenic Intergenic -144909 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 257-97 chr12 133075544 133075684 + 3 NA Intergenic Intergenic -4589 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 454-29 chr10 78123894 78124157 + 3 NA Intergenic L1M7|LINE|L1 90162 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 499-213 chr5 144725830 144726093 + 3 NA Intergenic L1PB2|LINE|L1 520570 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 583-173 chr9 93877421 93877871 + 3 NA Intergenic L1M4|LINE|L1 58289 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 408-170 chr2 146876714 146876954 + 3 NA Intergenic Intergenic 289777 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 566-56 chr15 76446333 76446694 + 3 NA intron (NR_148227, intron 25 of 32) intron (NR_148227, intron 25 of 32) 109740 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 398-279 chr5 126168552 126168718 + 3 NA Intergenic L1M2|LINE|L1 -10942 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 335-124 chr12 38685802 38685965 + 3 NA intron (NM_153634, intron 15 of 19) intron (NM_153634, intron 15 of 19) 219708 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 498-241 chr6 164813464 164813706 + 3 NA intron (NR_131926, intron 1 of 3) HERVL-int|LTR|ERVL 8478 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 405-303 chr7 52714545 52714683 + 3 NA Intergenic LTR9D|LTR|ERV1 -321019 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 537-269 chr9 17256120 17256385 + 3 NA intron (NM_001365029, intron 5 of 25) L1PA16|LINE|L1 121212 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 727-15 chr11 50462968 50463308 + 3 NA Intergenic ALR/Alpha|Satellite|centr 53991 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 412-198 chr22 28184014 28184235 + 3 NA intron (NM_001145418, intron 5 of 22) MIR|SINE|MIR -263512 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 440-152 chr22 36955051 36955337 + 3 NA Intergenic L1MEc|LINE|L1 -10054 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 382-151 chr18 6513977 6514137 + 3 NA intron (NR_120518, intron 2 of 5) FLAM_A|SINE|Alu 2641 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 349-68 chr10 76534397 76534546 + 3 NA intron (NM_001305581, intron 6 of 6) MLT1J2|LTR|ERVL-MaLR -353573 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 753-18 chr13 74716402 74716929 + 3 NA Intergenic Intergenic 163822 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 723-34 chr2 31705207 31705599 + 3 NA Intergenic MIRb|SINE|MIR 98577 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 760-54 chr4 93114066 93114562 + 3 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -714439 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 560-5 chr1 102880677 102881112 + 3 NA intron (NM_001854, intron 65 of 66) intron (NM_001854, intron 65 of 66) 227602 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 726-54 chr4 15751294 15751631 + 3 NA Intergenic Intergenic -26866 NR_132660 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 611-71 chr2 16339506 16339884 + 3 NA Intergenic L1MA4A|LINE|L1 289268 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 422-203 chr4 10653341 10653576 + 3 NA intron (NM_052964, intron 2 of 18) L1ME3E|LINE|L1 31310 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 584-66 chr19 57594979 57595436 + 3 NA Intergenic Intergenic -4678 NM_020880 348327 Hs.97111 NM_020880 ENSG00000183647 ZNF530 - zinc finger protein 530 protein-coding 660-61 chr3 25491511 25491949 + 3 NA intron (NR_110892, intron 2 of 6) AluSz6|SINE|Alu 33420 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 325-432 chr5 24019912 24020152 + 3 NA intron (NR_131245, intron 4 of 4) MLT2D|LTR|ERVL 68684 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 309-494 chr6 153859255 153859468 + 3 NA Intergenic AluSq10|SINE|Alu -151135 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 653-9 chr1 185553303 185553573 + 3 NA Intergenic Intergenic 75050 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 595-56 chr15 70108342 70108659 + 3 NA Intergenic L1MB2|LINE|L1 -10583 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 348-504 chr7 127597096 127597299 + 3 NA intron (NM_020369, intron 3 of 6) L1ME2|LINE|L1 3461 NM_020369 29999 Hs.712692 NM_020369 ENSG00000106328 FSCN3 - fascin actin-bundling protein 3 protein-coding 369-329 chr5 93144390 93144555 + 3 NA Intergenic Intergenic 426871 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 391-177 chr2 78225326 78225488 + 3 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 65324 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 409-54 chr12 64050411 64050575 + 3 NA intron (NM_001346201, intron 6 of 21) intron (NM_001346201, intron 6 of 21) 171803 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 613-39 chr16 59931851 59932067 + 3 NA intron (NR_110917, intron 1 of 3) L2a|LINE|L2 76606 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 356-167 chr15 72881499 72881747 + 3 NA Intergenic L1ME1|LINE|L1 -97865 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 359-63 chr10 67588702 67588887 + 3 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 76866 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 301-151 chr16 78206437 78206598 + 3 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 106863 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 806-11 chr12 64576680 64577113 + 3 NA Intergenic Intergenic -33599 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 658-107 chr6 63568073 63568483 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -3734 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 391-337 chr8 16877572 16877881 + 3 NA Intergenic Intergenic 124619 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 368-494 chrX 84200298 84200451 + 3 NA Intergenic Intergenic -12175 NM_014496 27330 Hs.234478 NM_014496 ENSG00000072133 RPS6KA6 PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6 ribosomal protein S6 kinase A6 protein-coding 253-312 chr4 183980999 183981187 + 3 NA intron (NM_020225, intron 1 of 3) intron (NM_020225, intron 1 of 3) 75786 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 1259-8 chr5 20382167 20382972 + 3 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 77018 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 748-62 chr4 16510418 16510757 + 3 NA intron (NM_001304435, intron 6 of 7) intron (NM_001304435, intron 6 of 7) 283924 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 751-14 chr12 61033203 61033570 + 3 NA Intergenic Intergenic 1159453 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 353-155 chr15 46989052 46989194 + 3 NA Intergenic L1PREC2|LINE|L1 -194966 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 403-81 chr12 100561592 100561806 + 3 NA intron (NR_135146, intron 9 of 10) intron (NR_135146, intron 9 of 10) -11985 NM_174942 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 728-42 chr19 9576366 9576721 + 3 NA intron (NM_001308269, intron 1 of 4) L1MA4|LINE|L1 7961 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 350-173 chr17 32426597 32426844 + 3 NA Intergenic AluSp|SINE|Alu -17790 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 519-236 chr8 84958117 84958426 + 3 NA Intergenic L1MC1|LINE|L1 -148967 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 778-34 chr2 996214 996674 + 3 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -45052 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 402-336 chr8 48750398 48750565 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -15170 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 500-33 chr10 80657298 80657484 + 3 NA Intergenic Intergenic 7594 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 326-455 chr6 61814104 61814303 + 3 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 240073 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 499-196 chr5 13599048 13599326 + 3 NA Intergenic Intergenic 345293 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 420-17 chr1 181614858 181615112 + 3 NA intron (NM_001205293, intron 6 of 47) L1MEc|LINE|L1 131468 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 401-302 chr7 64267381 64267615 + 3 NA TTS (NM_153363) TTS (NM_153363) 39024 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 483-280 chr9 15044587 15044895 + 3 NA Intergenic Intergenic 51414 NR_003920 389705 Hs.431257 NR_003920 LOC389705 - histone PARylation factor 1 pseudogene pseudo 417-231 chr5 163717067 163717249 + 3 NA Intergenic Intergenic 211539 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 507-235 chr7 88593235 88593522 + 3 NA Intergenic L1PB4|LINE|L1 -166322 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 608-65 chr19 51992283 51992661 + 3 NA 3' UTR (NM_001321317, exon 4 of 4) 3' UTR (NM_001321317, exon 4 of 4) -5632 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 414-241 chr4 89347791 89348021 + 3 NA Intergenic L1M3f|LINE|L1 -40106 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 365-169 chr18 78932127 78932297 + 3 NA Intergenic Intergenic -48063 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 318-2 chr1 11006602 11006823 + 3 NA Intergenic AluY|SINE|Alu -5910 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 381-167 chr19 37646157 37646312 + 3 NA intron (NM_001320666, intron 3 of 5) Tigger7|DNA|TcMar-Tigger 9231 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 376-89 chr12 128673361 128673626 + 3 NA intron (NM_001136103, intron 5 of 8) LTR40b|LTR|ERVL 150465 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 530-250 chr8 79032392 79032716 + 3 NA Intergenic L1PA11|LINE|L1 195025 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 539-173 chr5 151414859 151415099 + 3 NA Intergenic Intergenic -22067 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 198-197 chr5 61020120 61020212 + 3 NA intron (NM_174889, intron 1 of 3) L1MEd|LINE|L1 74961 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 477-254 chr7 14880165 14880519 + 3 NA intron (NM_001350717, intron 1 of 24) AluSx4|SINE|Alu 22409 NM_001350723 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 560-28 chr11 99961589 99961916 + 3 NA intron (NM_001243270, intron 7 of 23) intron (NM_001243270, intron 7 of 23) 405607 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 507-155 chr22 21456639 21456888 + 3 NA Intergenic FRAM|SINE|Alu -10407 NM_001207052 645426 Hs.376511 NM_001207052 ENSG00000206140 TMEM191C - transmembrane protein 191C protein-coding 330-57 chr10 34045712 34045878 + 3 NA Intergenic L1PA10|LINE|L1 -273115 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 407-34 chr10 75843785 75844054 + 3 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 61158 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 848-52 chrX 69743383 69744001 + 3 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 127579 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 299-155 chr16 19022310 19022424 + 3 NA intron (NM_001300732, intron 4 of 14) Tigger3a|DNA|TcMar-Tigger 38080 NM_001160364 79905 Hs.187377 NM_024847 ENSG00000170537 TMC7 - transmembrane channel like 7 protein-coding 305-450 chr5 126051521 126051693 + 3 NA Intergenic Intergenic -127970 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 545-208 chr6 130077987 130078203 + 3 NA intron (NM_001007102, intron 12 of 21) intron (NM_001007102, intron 12 of 21) 58451 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 428-267 chr6 169945515 169945800 + 3 NA Intergenic L1ME1|LINE|L1 -16966 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 612-130 chr7 49069270 49069564 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger 144870 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 576-62 chr17 15998435 15998664 + 3 NA intron (NM_001042697, intron 1 of 4) intron (NM_001042697, intron 1 of 4) 1155 NM_001042697 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger SWIM-type containing 7 protein-coding 514-12 chr1 158108879 158109167 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 31617 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 372-126 chr12 127469904 127470116 + 3 NA Intergenic MLT2B4|LTR|ERVL -129938 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 541-202 chr6 55396525 55396822 + 3 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 69204 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 660-14 chr11 44781079 44781409 + 3 NA intron (NM_130783, intron 2 of 9) intron (NM_130783, intron 2 of 9) 54282 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 384-168 chr2 66608396 66608560 + 3 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 34448 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 734-62 chr5 117626099 117626433 + 3 NA Intergenic L1PA10|LINE|L1 -104095 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 411-218 chr5 8421504 8421696 + 3 NA intron (NR_039984, intron 2 of 5) L1MC4|LINE|L1 35964 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 332-143 chr13 77955225 77955426 + 3 NA intron (NM_000115, intron 1 of 7) L1MB1|LINE|L1 20202 NM_000115 1910 Hs.82002 NM_000115 ENSG00000136160 EDNRB ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A endothelin receptor type B protein-coding 431-279 chr7 127227065 127227276 + 3 NA intron (NR_110194, intron 2 of 2) intron (NR_110194, intron 2 of 2) 12043 NR_110195 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 497-18 chr10 43683107 43683307 + 3 NA Intergenic L2|LINE|L2 -34326 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 481-88 chr14 48418332 48418578 + 3 NA Intergenic L1MA4|LINE|L1 -623441 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 722-60 chr4 85628739 85629203 + 3 NA intron (NM_001025616, intron 2 of 9) L1MA9|LINE|L1 -93497 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 502-124 chr19 56552341 56552559 + 3 NA 3' UTR (NM_001308440, exon 7 of 7) 3' UTR (NM_001308440, exon 7 of 7) 13502 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 473-211 chr5 36477219 36477547 + 3 NA Intergenic Intergenic -128972 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 563-168 chr7 7406695 7406978 + 3 NA intron (NM_001037763, intron 27 of 34) L2a|LINE|L2 129037 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 604-110 chr3 101366062 101366291 + 3 NA intron (NM_020654, intron 9 of 23) intron (NM_020654, intron 9 of 23) -45601 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 450-318 chr9 18419150 18419439 + 3 NA Intergenic L1MD2|LINE|L1 -54859 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 537-246 chr8 55299912 55300182 + 3 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 155274 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 387-63 chr11 81345069 81345247 + 3 NA Intergenic Intergenic 545678 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 387-151 chr18 78184139 78184328 + 3 NA Intergenic L1M2|LINE|L1 -190506 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 719-14 chr12 18975704 18976109 + 3 NA Intergenic LTR40a|LTR|ERVL -153827 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 718-73 chr5 63572379 63572750 + 3 NA Intergenic Intergenic 389728 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 426-82 chr15 58471842 58472078 + 3 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 26775 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 600-98 chr5 13344343 13344646 + 3 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -311608 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 452-16 chr1 180697439 180697680 + 3 NA intron (NR_137330, intron 2 of 12) L1M2|LINE|L1 65537 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 575-96 chr2 208993175 208993510 + 3 NA Intergenic L1M5|LINE|L1 -430705 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 738-2 chr1 107675253 107675774 + 3 NA intron (NM_006113, intron 19 of 26) MIRb|SINE|MIR 12986 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 253-189 chr2 103072661 103072774 + 3 NA Intergenic Intergenic -88288 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 237-48 chr11 24435266 24435385 + 3 NA Intergenic Intergenic -61728 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 769-59 chr6 119270367 119270882 + 3 NA intron (NM_005907, intron 5 of 12) L1MC5|LINE|L1 79137 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 670-41 chr15 71759672 71760100 + 3 NA intron (NM_001286429, intron 9 of 11) UCON74|DNA?|DNA? -50668 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 497-156 chr20 48231204 48231503 + 3 NA Intergenic Intergenic -128558 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 357-343 chr5 50582812 50583028 + 3 NA Intergenic Intergenic -83011 NM_001178055 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 574-187 chr8 122346008 122346217 + 3 NA Intergenic L1MB2|LINE|L1 222532 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 250-225 chr2 177168036 177168187 + 3 NA Intergenic Intergenic 44300 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 509-2 chr1 37121124 37121302 + 3 NA Intergenic FRAM|SINE|Alu -40350 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 426-104 chr17 69228449 69228675 + 3 NA intron (NM_080282, intron 2 of 39) intron (NM_080282, intron 2 of 39) 6450 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 420-174 chr22 32236341 32236554 + 3 NA intron (NM_014227, intron 7 of 14) intron (NM_014227, intron 7 of 14) 18900 NM_014227 6527 Hs.130101 NM_014227 ENSG00000100191 SLC5A4 DJ90G24.4|SAAT1|SGLT3 solute carrier family 5 member 4 protein-coding 310-425 chr5 125100078 125100307 + 3 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 63361 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 507-216 chr6 44999051 44999304 + 3 NA intron (NM_181356, intron 8 of 12) (GTGAGA)n|Simple_repeat|Simple_repeat 198593 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 512-229 chr5 145056668 145056839 + 3 NA Intergenic Intergenic 778589 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 544-96 chr18 72212113 72212327 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR 332122 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 311-292 chr20 9756169 9756324 + 3 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 82830 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 467-26 chr10 43017848 43018018 + 3 NA Intergenic L1PA8A|LINE|L1 20370 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 530-105 chr18 38818358 38818582 + 3 NA Intergenic L1MC3|LINE|L1 803705 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 246-13 chr1 114909819 114909910 + 3 NA intron (NM_001282542, intron 16 of 30) L2|LINE|L2 55001 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 371-65 chr11 30963930 30964156 + 3 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) 28643 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 920-29 chr8 139544284 139544622 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 158670 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 533-96 chr2 34168186 34168363 + 3 NA intron (NR_126403, intron 4 of 5) L1MA7|LINE|L1 101048 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 294-350 chr4 144547470 144547676 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 98446 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 802-11 chr11 50369870 50370197 + 3 NA Intergenic ALR/Alpha|Satellite|centr -39114 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 337-113 chr12 30915538 30915756 + 3 NA Intergenic Intergenic -11101 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 398-170 chr2 115699700 115699848 + 3 NA intron (NM_001321912, intron 8 of 25) L1M4c|LINE|L1 355959 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 762-10 chr10 81237374 81237824 + 3 NA Intergenic L1PA10|LINE|L1 587802 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 392-117 chr18 1776824 1777026 + 3 NA Intergenic Intergenic -417296 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 623-105 chr5 55081478 55081909 + 3 NA Intergenic L2c|LINE|L2 -20953 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 338-445 chr5 106778771 106779043 + 3 NA Intergenic Intergenic 232107 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 518-232 chr5 58194926 58195209 + 3 NA Intergenic Intergenic -72726 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 494-203 chr4 62026216 62026424 + 3 NA intron (NM_001371343, intron 20 of 23) intron (NM_001371343, intron 20 of 23) 135445 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 539-142 chr3 59739074 59739340 + 3 NA Intergenic L1ME3B|LINE|L1 -80710 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 582-59 chr18 3826670 3827031 + 3 NA intron (NM_001242761, intron 4 of 11) L2a|LINE|L2 18508 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 370-80 chr11 29727089 29727294 + 3 NA Intergenic Intergenic 108389 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 610-72 chr18 1387369 1387608 + 3 NA Intergenic L1PA13|LINE|L1 -27859 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 560-88 chr2 177126266 177126526 + 3 NA Intergenic Intergenic 86015 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 648-6 chr1 163022889 163023295 + 3 NA Intergenic L1MA8|LINE|L1 -45514 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 439-304 chr9 29001850 29002031 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -112985 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 378-333 chr5 20151671 20151908 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -153762 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 420-45 chr10 98936315 98936499 + 3 NA intron (NM_021828, intron 3 of 11) L1PA10|LINE|L1 -11839 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 312-153 chr14 71924583 71924695 + 3 NA Intergenic L1MA9|LINE|L1 -7532 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 312-137 chr14 38178383 38178521 + 3 NA Intergenic Intergenic -29452 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 601-6 chr1 192495237 192495656 + 3 NA Intergenic L1M5|LINE|L1 -80327 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 407-155 chr2 162009066 162009282 + 3 NA intron (NM_001935, intron 21 of 25) intron (NM_001935, intron 21 of 25) 65041 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 457-46 chr12 37296362 37296600 + 3 NA Intergenic ALR/Alpha|Satellite|centr -1020293 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 654-105 chr5 166996967 166997329 + 3 NA Intergenic Intergenic -70778 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 666-29 chr14 65935603 65935999 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 464699 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 382-232 chr2 231486276 231486443 + 3 NA Intergenic L1MC4a|LINE|L1 -21875 NM_005381 4691 Hs.79110 NM_005381 ENSG00000115053 NCL C23|Nsr1 nucleolin protein-coding 367-393 chr6 66855978 66856167 + 3 NA Intergenic L1MA9|LINE|L1 1068193 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 395-147 chr18 76752502 76752695 + 3 NA Intergenic MER65A|LTR|ERV1 62569 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 694-82 chr3 21447610 21447940 + 3 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) 42049 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 374-348 chr6 154625600 154625756 + 3 NA Intergenic Intergenic -107700 NM_001286199 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 559-116 chr22 48776299 48776512 + 3 NA Intergenic LTR33|LTR|ERVL -3890 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 762-14 chr11 114690513 114691045 + 3 NA intron (NM_182495, intron 2 of 5) L1PA17|LINE|L1 12252 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 367-414 chr7 34273448 34273614 + 3 NA Intergenic Intergenic 367992 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 470-296 chrX 74855507 74855814 + 3 NA intron (NM_001008537, intron 1 of 3) L1M4|LINE|L1 69792 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 310-36 chr10 14565483 14565692 + 3 NA intron (NM_001320736, intron 1 of 4) intron (NM_001320736, intron 1 of 4) 6412 NM_001320736 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 544-15 chr1 184651505 184651816 + 3 NA Intergenic L2a|LINE|L2 103198 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 359-205 chr19 27587155 27587350 + 3 NA Intergenic ALR/Alpha|Satellite|centr -206179 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 672-97 chr7 11995754 11996115 + 3 NA Intergenic L1PA16|LINE|L1 -163736 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 662-29 chr15 53382813 53383128 + 3 NA Intergenic Intergenic 157882 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 691-67 chr5 40240496 40240845 + 3 NA Intergenic Intergenic 188379 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 587-102 chr3 44707042 44707336 + 3 NA Intergenic Intergenic -5454 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 246-41 chr10 47071638 47071738 + 3 NA Intergenic L1ME4b|LINE|L1 159966 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 460-214 chr4 5419695 5419944 + 3 NA intron (NM_001306082, intron 7 of 12) HAL1M8|LINE|L1 -104750 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 558-186 chr6 47354662 47355050 + 3 NA Intergenic L1M4b|LINE|L1 -44951 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 730-4 chr1 119889263 119889642 + 3 NA Intergenic L1MB2|LINE|L1 7063 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 671-63 chr3 104999678 105000165 + 3 NA Intergenic L1PA17|LINE|L1 -366792 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 662-96 chr8 53889457 53889919 + 3 NA intron (NR_104579, intron 1 of 3) L1ME3|LINE|L1 8816 NM_003702 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 298-466 chr8 109850056 109850212 + 3 NA Intergenic L1ME3B|LINE|L1 125637 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 484-216 chr5 93323609 93323800 + 3 NA Intergenic Intergenic 247639 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 295-404 chr6 50115770 50115958 + 3 NA Intergenic Intergenic -65935 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 548-119 chr2 114861555 114861889 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -28174 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 247-362 chr6 69773482 69773604 + 3 NA intron (NM_001367272, intron 3 of 15) intron (NM_001367272, intron 3 of 15) 22923 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 414-180 chr2 236313629 236313835 + 3 NA Intergenic L1MD2|LINE|L1 -49387 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 491-174 chr3 115915421 115915635 + 3 NA intron (NM_001318915, intron 3 of 8) MIR3|SINE|MIR -10402 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 487-77 chr13 108683468 108683761 + 3 NA intron (NM_015011, intron 2 of 34) intron (NM_015011, intron 2 of 34) 54003 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 591-160 chr8 14717110 14717330 + 3 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 136290 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 545-224 chr7 50952248 50952510 + 3 NA Intergenic MIRb|SINE|MIR -158926 NM_001371008 329-65 chr10 81510482 81510666 + 3 NA Intergenic LOR1a|LTR|ERV1 -364620 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 597-77 chr2 154230965 154231343 + 3 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 226284 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 433-285 chr8 116123982 116124130 + 3 NA intron (NR_046215, intron 6 of 13) MER67C|LTR|ERV1 201003 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 582-166 chr9 1280281 1280716 + 3 NA Intergenic HAL1|LINE|L1 229011 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 760-14 chr12 129581340 129581725 + 3 NA intron (NM_133448, intron 2 of 8) MLT2A2|LTR|ERVL 322493 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 454-140 chr2 19464940 19465185 + 3 NA Intergenic Intergenic -106439 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 753-13 chr11 83417660 83418129 + 3 NA Intergenic L1PA15|LINE|L1 -131487 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 404-196 chr20 43884307 43884480 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -10325 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 755 chr1 5845611 5846078 + 3 NA Intergenic Intergenic 16897 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 932-21 chr5 7137939 7138308 + 3 NA Intergenic Intergenic 131231 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 406-103 chr16 47891166 47891328 + 3 NA intron (NR_110650, intron 4 of 5) MER34A|LTR|ERV1 -4117 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LINC02192 - long intergenic non-protein coding RNA 2192 ncRNA 588-101 chr3 109885426 109885807 + 3 NA Intergenic Intergenic 282788 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 460-217 chr4 35636096 35636284 + 3 NA Intergenic Intergenic 607749 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 583-59 chr15 35252053 35252436 + 3 NA Intergenic MIR|SINE|MIR 14918 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 571-156 chr7 93173344 93173631 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -25102 NM_152703 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 519-112 chr2 123326295 123326620 + 3 NA Intergenic L1MB1|LINE|L1 -252976 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 659-15 chr11 20975980 20976297 + 3 NA intron (NM_201551, intron 12 of 18) (AT)n|Simple_repeat|Simple_repeat 306552 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 560-155 chr6 129978150 129978465 + 3 NA Intergenic LTR41|LTR|ERVL -40062 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 309-439 chr5 62172130 62172286 + 3 NA Intergenic Intergenic -133954 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 528-203 chr5 94207686 94207874 + 3 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -96081 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 354-415 chr6 164579910 164580072 + 3 NA Intergenic Intergenic 242072 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 474-227 chr5 24333738 24334114 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 311052 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 494-256 chr6 149199140 149199324 + 3 NA Intergenic Intergenic -18692 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 827-21 chr2 17336808 17337334 + 3 NA Intergenic Intergenic 181369 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 464-32 chr11 35677313 35677484 + 3 NA intron (NM_017583, intron 1 of 4) intron (NM_017583, intron 1 of 4) 14623 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 506-158 chr2 165738437 165738730 + 3 NA Intergenic L1ME2|LINE|L1 55664 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 670-16 chr10 88319265 88319668 + 3 NA intron (NM_018363, intron 5 of 6) L1PA17|LINE|L1 263852 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 567-69 chr17 3428071 3428431 + 3 NA Intergenic L1PA10|LINE|L1 5590 NM_003554 8388 Hs.533931 NM_003554 ENSG00000127780 OR1E2 OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529 olfactory receptor family 1 subfamily E member 2 protein-coding 303-121 chr14 57974061 57974165 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -108021 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 465-119 chr19 36878007 36878207 + 3 NA exon (NM_003419, exon 3 of 3) exon (NM_003419, exon 3 of 3) 26456 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 1540-5 chrX 47977020 47977872 + 3 NA exon (NM_001007088, exon 6 of 6) exon (NM_001007088, exon 6 of 6) 26543 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 661-87 chr7 72489114 72489445 + 3 NA Intergenic Intergenic -42136 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 513-165 chr21 27551711 27552050 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -170499 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 566-75 chr18 61160712 61161019 + 3 NA Intergenic Intergenic -172565 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 340-315 chr20 25700597 25700717 + 3 NA Intergenic L1MA4|LINE|L1 -3804 NM_015655 26152 Hs.61881 NM_015655 ENSG00000130684 ZNF337 - zinc finger protein 337 protein-coding 322-5 chr1 45187560 45187713 + 3 NA intron (NM_020883, intron 1 of 13) L1MB8|LINE|L1 18969 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 293-212 chr2 175587775 175587952 + 3 NA Intergenic L1ME3D|LINE|L1 -406153 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 503-131 chr18 22877770 22878029 + 3 NA Intergenic L1MC5a|LINE|L1 -55429 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 782-19 chr14 60548937 60549378 + 3 NA Intergenic AluJo|SINE|Alu 40011 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 292-372 chr6 15796590 15796767 + 3 NA Intergenic L2a|LINE|L2 -133620 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 466-107 chr18 13968120 13968342 + 3 NA Intergenic L1MB8|LINE|L1 -52524 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 383-196 chr2 107145449 107145687 + 3 NA Intergenic Intergenic 203957 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 372-102 chr12 16974059 16974222 + 3 NA Intergenic L1MEf|LINE|L1 -14607 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 680-104 chr6 125174419 125174842 + 3 NA intron (NM_001292026, intron 1 of 4) intron (NM_001292026, intron 1 of 4) 20384 NM_001292026 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 415-164 chr22 27150450 27150680 + 3 NA Intergenic Intergenic -36951 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 441-116 chr2 18577709 18577929 + 3 NA intron (NM_001199104, intron 7 of 10) L1PA15|LINE|L1 11750 NM_033253 93034 Hs.744358 NM_033253 ENSG00000185013 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 1182-2 chr1 188615929 188616526 + 3 NA Intergenic Intergenic 1172599 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 799-16 chr15 69938995 69939412 + 3 NA Intergenic L2a|LINE|L2 103969 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 327-281 chr2 171549713 171549880 + 3 NA intron (NM_001256909, intron 2 of 3) intron (NM_001256909, intron 2 of 3) 27322 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 1087-16 chr6 60668540 60669040 + 3 NA Intergenic Intergenic -905340 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 464-104 chr18 80053740 80053942 + 3 NA Intergenic L1PB4|LINE|L1 -13415 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 362-474 chrX 38488262 38488402 + 3 NA Intergenic Intergenic -73146 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 582-102 chr4 12496367 12496638 + 3 NA Intergenic Intergenic 273051 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 470-291 chr9 103127931 103128087 + 3 NA Intergenic MER61-int|LTR|ERV1 132676 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 571-15 chr10 58320388 58320714 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR 9128 NR_158219 112268068 Hs.586671 NR_158219 LOC112268068 - uncharacterized LOC112268068 ncRNA 314-112 chr12 1854706 1854846 + 3 NA intron (NM_172364, intron 22 of 37).2 L2a|LINE|L2 34211 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 376-146 chr18 11143174 11143319 + 3 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 5516 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 662-76 chr5 106654079 106654466 + 3 NA Intergenic LTR104_Mam|LTR|Gypsy 356742 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 250-83 chr12 4339021 4339156 + 3 NA intron (NM_020375, intron 3 of 5) L1MA2|LINE|L1 17875 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 303-269 chr22 19324600 19324771 + 3 NA Intergenic L1M4|LINE|L1 -32966 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 343-563 chr8 135320032 135320220 + 3 NA Intergenic Intergenic 85995 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 375-220 chr2 123739388 123739568 + 3 NA Intergenic Intergenic 285696 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1122-3 chr10 31683703 31684497 + 3 NA Intergenic L1M4|LINE|L1 224826 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 716-33 chr2 19161596 19162002 + 3 NA Intergenic Intergenic -134828 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 607-152 chr8 138290243 138290457 + 3 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -206805 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 701-74 chr5 85183171 85183416 + 3 NA Intergenic L1MB5|LINE|L1 -798413 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 695-70 chr4 67975208 67975609 + 3 NA Intergenic L1MD|LINE|L1 -11915 NM_182606 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 461-207 chr5 19955280 19955501 + 3 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 32810 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 666-105 chr6 151595199 151595505 + 3 NA intron (NM_025059, intron 8 of 10) intron (NM_025059, intron 8 of 10) -95144 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 165-109 chr6 54970986 54971047 + 3 NA Intergenic Intergenic 124245 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 412-250 chr5 20980841 20980988 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -365379 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 501-200 chr5 2791185 2791356 + 3 NA Intergenic L1MEc|LINE|L1 39139 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 406-190 chr3 100859659 100859868 + 3 NA intron (NM_001349332, intron 12 of 35) intron (NM_001349332, intron 12 of 35) 133727 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 406-9 chr1 85024843 85025014 + 3 NA intron (NM_018298, intron 9 of 12) MLT1J2|LTR|ERVL-MaLR 23572 NM_018298 55283 Hs.535239 NM_018298 ENSG00000055732 MCOLN3 TRP-ML3|TRPML3 mucolipin 3 protein-coding 469-256 chr6 165294846 165295010 + 3 NA intron (NM_144980, intron 5 of 8) intron (NM_144980, intron 5 of 8) 14677 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 481-168 chr20 6211333 6211574 + 3 NA Intergenic L1MEd|LINE|L1 -87909 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 290-114 chr12 123224953 123225073 + 3 NA intron (NM_022782, intron 3 of 23) MER20B|DNA|hAT-Charlie 8128 NM_022782 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 574-121 chr4 35788478 35788707 + 3 NA Intergenic Intergenic 455347 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 296-294 chr3 50980801 50980929 + 3 NA intron (NM_004947, intron 5 of 52) L1M2|LINE|L1 305785 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 1421 chr19 37569419 37570346 + 3 NA non-coding (NR_038247, exon 3 of 5) non-coding (NR_038247, exon 3 of 5) 18508 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 404-202 chr22 19569902 19570065 + 3 NA Intergenic Intergenic -3144 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 760-36 chr2 155818724 155819202 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 435968 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 372-394 chr5 29842752 29842957 + 3 NA Intergenic Intergenic -37706 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 492-166 chr22 48190723 48190921 + 3 NA Intergenic L1MD2|LINE|L1 -83542 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 319-245 chr2 76118677 76118896 + 3 NA Intergenic L1PA14|LINE|L1 -407871 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 518-169 chr22 47079765 47080093 + 3 NA intron (NM_001284305, intron 11 of 12) L1ME3B|LINE|L1 -163887 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 456-146 chr2 16953128 16953387 + 3 NA Intergenic Intergenic -287423 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 304-39 chr10 16323125 16323310 + 3 NA Intergenic LTR33|LTR|ERVL -113726 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 502-245 chr7 54326539 54326805 + 3 NA Intergenic L3|LINE|CR1 -4025 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 724-101 chr8 112012736 112013148 + 3 NA Intergenic L1ME1|LINE|L1 -630551 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 980-6 chr12 37923499 37924130 + 3 NA Intergenic ALR/Alpha|Satellite|centr -392960 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 579-171 chr8 117404820 117405169 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -115719 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 432-12 chr1 158598997 158599172 + 3 NA Intergenic L1MA4A|LINE|L1 -7355 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 470-159 chr20 46497613 46497879 + 3 NA Intergenic Intergenic 15826 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 650-100 chr6 10661628 10661917 + 3 NA Intergenic Intergenic 32837 NM_001145020 347744 Hs.61389 NM_001145020 ENSG00000137434 C6orf52 - chromosome 6 open reading frame 52 protein-coding 542-58 chr14 63299816 63300034 + 3 NA Intergenic Intergenic 19010 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 571-177 chr8 127326858 127327184 + 3 NA intron (NR_117099, intron 2 of 3) intron (NR_117099, intron 2 of 3) -73378 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 467-216 chr5 13499422 13499623 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 444958 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 853-23 chr3 32092685 32093191 + 3 NA Intergenic AluJb|SINE|Alu -13573 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 607-91 chr22 33848003 33848282 + 3 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 72286 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 384-384 chr8 133306246 133306514 + 3 NA Intergenic MER65A|LTR|ERV1 -9076 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 557-183 chr7 46829172 46829452 + 3 NA Intergenic L1PB1|LINE|L1 -132190 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 744-39 chr20 10838978 10839340 + 3 NA Intergenic Intergenic 70113 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 727-58 chr4 95298787 95299083 + 3 NA intron (NM_003728, intron 3 of 15) intron (NM_003728, intron 3 of 15) 207444 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 455-143 chr20 5177207 5177495 + 3 NA intron (NM_003818, intron 4 of 12) intron (NM_003818, intron 4 of 12) 50343 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 849-53 chrX 25800713 25801295 + 3 NA Intergenic L1MA3|LINE|L1 -337339 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 496-130 chr2 31158608 31158803 + 3 NA Intergenic Intergenic -20265 NM_001329096 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 402-163 chr2 125047938 125048172 + 3 NA Intergenic MIRb|SINE|MIR 1022768 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 445-253 chr7 64938367 64938648 + 3 NA Intergenic Intergenic 35265 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 454-241 chr4 104650009 104650181 + 3 NA intron (NR_125926, intron 4 of 9) L1MA7|LINE|L1 -155201 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 529-22 chr10 127848240 127848564 + 3 NA Intergenic Intergenic 44539 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 402-292 chr5 179000820 179000991 + 3 NA Intergenic AluJb|SINE|Alu -5585 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 426-138 chr2 114801857 114802012 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 31614 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 960-12 chr17 81907003 81907585 + 3 NA intron (NM_001256434, intron 6 of 13) intron (NM_001256434, intron 6 of 13) 3881 NM_001282203 5833 Hs.569843 NM_002861 ENSG00000185813 PCYT2 ET phosphate cytidylyltransferase 2, ethanolamine protein-coding 239-35 chr10 57297261 57297402 + 3 NA Intergenic L1MD|LINE|L1 7228 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 472-332 chr8 131733349 131733555 + 3 NA Intergenic L1MCa|LINE|L1 -170641 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 279-61 chr10 129202348 129202514 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -264810 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 375-465 chrX 73505999 73506158 + 3 NA Intergenic L1MDa|LINE|L1 57007 NR_029423 139201 Hs.586477 NR_029423 ENSG00000269904 MAP2K4P1 - mitogen-activated protein kinase kinase 4 pseudogene 1 pseudo 555-208 chr8 121850765 121851042 + 3 NA Intergenic MIR|SINE|MIR -209463 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 743-82 chr7 93467704 93468064 + 3 NA intron (NM_001164737, intron 8 of 15) MIR|SINE|MIR 14971 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 420-107 chr18 7719505 7719741 + 3 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 152307 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 679-29 chr14 44342438 44342810 + 3 NA Intergenic Intergenic 164659 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 313-26 chr1 192060621 192060769 + 3 NA Intergenic Intergenic -97767 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 218-70 chr12 63495037 63495196 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 173377 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 322-337 chr3 99477856 99478041 + 3 NA Intergenic L1MEg|LINE|L1 -160646 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 381-218 chr2 225861652 225861830 + 3 NA Intergenic L1MC3|LINE|L1 -281053 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 310-303 chr21 26777908 26778129 + 3 NA Intergenic MLT2B4|LTR|ERVL 67391 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 444-261 chr8 101757143 101757340 + 3 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 33728 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 426-13 chr1 193677585 193677816 + 3 NA Intergenic MIRb|SINE|MIR 372955 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 433-20 chr10 26338327 26338578 + 3 NA Intergenic Intergenic -99889 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 496-158 chr20 4302772 4303019 + 3 NA Intergenic Intergenic -53608 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 655-4 chr1 95702806 95703191 + 3 NA Intergenic L1M3e|LINE|L1 192882 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 421-287 chr7 88963804 88963967 + 3 NA intron (NM_181646, intron 1 of 3) L1MB4|LINE|L1 -168148 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 396-40 chr1 238574621 238574795 + 3 NA Intergenic L1MDa|LINE|L1 -88691 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 804-70 chr8 88455587 88455981 + 3 NA Intergenic Tigger4|DNA|TcMar-Tigger -128301 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 460-8 chr1 112050092 112050354 + 3 NA Intergenic Intergenic 59687 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 282-387 chr5 116638330 116638477 + 3 NA Intergenic (ATTTGAT)n|Simple_repeat|Simple_repeat -63580 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 552-147 chr3 151520969 151521178 + 3 NA Intergenic L1PA14|LINE|L1 44922 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 487-276 chr7 94946879 94947179 + 3 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 37131 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 759-29 chr18 60127972 60128437 + 3 NA Intergenic Intergenic 228208 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 345-258 chr2 76493735 76493880 + 3 NA Intergenic Intergenic -492158 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 430-62 chr12 38986565 38986738 + 3 NA Intergenic L1M4|LINE|L1 -81060 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 474-199 chr4 31532624 31532876 + 3 NA intron (NR_149121, intron 1 of 2) L1MA4|LINE|L1 26206 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 219-133 chr17 60562427 60562507 + 3 NA Intergenic Intergenic -2079 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 468-215 chr4 313876 314187 + 3 NA Intergenic L1P4|LINE|L1 -8557 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 358-433 chr7 36139063 36139203 + 3 NA Intergenic Intergenic -14121 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 651-57 chr2 21622520 21622819 + 3 NA Intergenic HAL1|LINE|L1 87983 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 982-30 chr8 117774461 117774980 + 3 NA Intergenic L1PREC2|LINE|L1 146193 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 279-195 chr2 132777468 132777662 + 3 NA intron (NM_207481, intron 13 of 17) intron (NM_207481, intron 13 of 17) -106039 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 320-179 chr16 3390866 3391109 + 3 NA intron (NM_017810, intron 2 of 5) intron (NM_017810, intron 2 of 5) 10017 NM_001324342 54925 Hs.592078 NM_017810 ENSG00000140987 ZSCAN32 HCCS-5|ZNF434 zinc finger and SCAN domain containing 32 protein-coding 543-235 chr7 86618637 86619038 + 3 NA Intergenic L1MA8|LINE|L1 -25072 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 311-106 chr12 88778343 88778523 + 3 NA Intergenic Intergenic -197960 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 418-229 chr5 169144041 169144248 + 3 NA intron (NM_003062, intron 4 of 35) L2c|LINE|L2 119550 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 384-275 chr4 124512840 124513046 + 3 NA intron (NR_110838, intron 7 of 8) intron (NR_110838, intron 7 of 8) 45491 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 252-252 chr3 22388911 22389039 + 3 NA Intergenic Intergenic 431836 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 673-67 chr20 14709805 14710144 + 3 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 155590 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 304-295 chr20 18857973 18858148 + 3 NA Intergenic L1MC|LINE|L1 -27857 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 313-224 chr19 37576715 37576903 + 3 NA intron (NR_038250, intron 2 of 2) intron (NR_038250, intron 2 of 2) 17937 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 403-5 chr1 59885526 59885704 + 3 NA Intergenic Intergenic 41158 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 673-36 chr15 86415402 86415790 + 3 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -98628 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 317-415 chr6 64749268 64749454 + 3 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -552057 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 526-135 chr2 126685121 126685378 + 3 NA intron (NM_016815, intron 1 of 2) intron (NM_016815, intron 1 of 2) 29091 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 402-326 chr7 98310200 98310417 + 3 NA intron (NM_018842, intron 9 of 13) intron (NM_018842, intron 9 of 13) 28622 NM_015379 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 374-117 chr15 94374518 94374711 + 3 NA intron (NM_018349, intron 11 of 21) intron (NM_018349, intron 11 of 21) 18684 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 594-100 chr4 58446198 58446584 + 3 NA Intergenic L2c|LINE|L2 89937 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 226-306 chr6 83093948 83094072 + 3 NA intron (NM_015018, intron 1 of 38) L1MB8|LINE|L1 26344 NM_001199942 23033 Hs.520246 NM_015018 ENSG00000083097 DOP1A DOP1|DOPEY1|KIAA1117|dJ202D23.2 DOP1 leucine zipper like protein A protein-coding 434-108 chr17 52548167 52548400 + 3 NA Intergenic Intergenic 157761 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 227-236 chr3 137587077 137587187 + 3 NA Intergenic L1MC4|LINE|L1 -177183 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 349-260 chr2 84386331 84386532 + 3 NA Intergenic Intergenic 72849 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 587-82 chr2 209471438 209471843 + 3 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 47593 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 439-292 chr8 131010213 131010551 + 3 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 30527 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 479-10 chr1 153031517 153031762 + 3 NA intron (NM_003125, intron 1 of 1) intron (NM_003125, intron 1 of 1) 436 NM_003125 6699 Hs.1076 NM_003125 ENSG00000169469 SPRR1B CORNIFIN|GADD33|SPR-IB|SPRR1 small proline rich protein 1B protein-coding 347-2 chr1 12457035 12457233 + 3 NA intron (NM_015378, intron 66 of 69) intron (NM_015378, intron 66 of 69) -50112 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 844-50 chr4 170602700 170603221 + 3 NA Intergenic Intergenic 140775 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 543-93 chr16 74250007 74250195 + 3 NA Intergenic Intergenic -34580 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 657-107 chr9 112994485 112994874 + 3 NA Intergenic Intergenic 17513 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 459-126 chr19 37380920 37381159 + 3 NA intron (NM_032453, intron 4 of 4) HAL1|LINE|L1 9940 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 588-156 chr8 77678904 77679337 + 3 NA Intergenic Intergenic 228423 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 335-174 chr15 71658885 71659079 + 3 NA intron (NM_001286429, intron 1 of 11) intron (NM_001286429, intron 1 of 11) 32557 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 373-110 chr14 54214388 54214599 + 3 NA Intergenic LTR81B|LTR|Gypsy -182375 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 405-72 chr12 118643529 118643742 + 3 NA Intergenic Intergenic 118044 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 754-75 chr7 3396578 3397011 + 3 NA intron (NM_152744, intron 1 of 44) L1MB4|LINE|L1 95542 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 188-36 chr12 27402858 27402943 + 3 NA intron (NM_001248003, intron 11 of 14) intron (NM_001248003, intron 11 of 14) 43734 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 1140 chr1 57734588 57735141 + 3 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -125717 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 440-70 chr14 82085357 82085636 + 3 NA Intergenic Intergenic -342358 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 311-346 chr3 96431610 96431723 + 3 NA Intergenic MER21-int|LTR|ERVL 71702 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 225-290 chr5 125247588 125247670 + 3 NA intron (NR_109882, intron 4 of 5) L1MA5|LINE|L1 210798 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 289-159 chr15 97642627 97642773 + 3 NA Intergenic L1MC2|LINE|L1 -82002 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 395-95 chr14 63315042 63315188 + 3 NA intron (NM_145171, intron 2 of 2) AluSx4|SINE|Alu 3820 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 748-82 chr7 97001996 97002392 + 3 NA intron (NR_015448, intron 1 of 2) CpG -3359 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 577-142 chr5 22239698 22240023 + 3 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -26010 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 874-24 chr5 125705312 125705841 + 3 NA Intergenic L1M4|LINE|L1 212315 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 452-123 chr2 54774720 54774972 + 3 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 49834 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 342-541 chr8 136075448 136075581 + 3 NA Intergenic L2c|LINE|L2 -455284 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 321-588 chr8 142152199 142152372 + 3 NA Intergenic (GGCCTG)n|Simple_repeat|Simple_repeat -24054 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 1259-9 chr7 37326749 37327758 + 3 NA intron (NM_001206480, intron 2 of 21) intron (NM_001206480, intron 2 of 21) 26415 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 503-6 chr1 44020918 44021160 + 3 NA intron (NM_001328629, intron 2 of 13) intron (NM_001328629, intron 2 of 13) -3699 NM_001328627 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 526-123 chr2 61982348 61982603 + 3 NA intron (NM_152516, intron 1 of 2) L1MA2|LINE|L1 76833 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 379-191 chr20 47583181 47583374 + 3 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 81390 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 801-53 chr7 1946067 1946463 + 3 NA intron (NM_001013837, intron 16 of 18) intron (NM_001013837, intron 16 of 18) -5694 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 680-82 chr3 80040251 80040569 + 3 NA Intergenic Intergenic -272412 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 306-251 chr2 124696620 124696788 + 3 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 671417 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 410-72 chr12 115683995 115684257 + 3 NA Intergenic Intergenic 464528 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 425-218 chr5 2691243 2691452 + 3 NA Intergenic MLT1G-int|LTR|ERVL-MaLR -21244 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 553-249 chr9 119709135 119709443 + 3 NA Intergenic Intergenic -225771 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 480-196 chr3 120912059 120912454 + 3 NA intron (NR_145517, intron 2 of 8) L2c|LINE|L2 3579 NM_001348343 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 921-17 chr5 32882800 32883382 + 3 NA Intergenic L1MA5A|LINE|L1 -64352 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 477-283 chr8 89232163 89232362 + 3 NA Intergenic L1ME3A|LINE|L1 525449 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 679-80 chr4 67225512 67225889 + 3 NA Intergenic L1MC5a|LINE|L1 196300 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 538-17 chr1 167908143 167908332 + 3 NA intron (NM_018417, intron 1 of 32) L1MA9|LINE|L1 5897 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 657-23 chr12 72950957 72951200 + 3 NA Intergenic Intergenic -208112 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 578-148 chr5 166983350 166983609 + 3 NA Intergenic Intergenic -57109 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 266-364 chr6 57167789 57167914 + 3 NA intron (NM_015555, intron 13 of 13) L2a|LINE|L2 4362 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 470-99 chr17 69664584 69664793 + 3 NA intron (NR_109972, intron 3 of 4) L1MEf|LINE|L1 70701 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 518-144 chr2 134058239 134058491 + 3 NA Intergenic L1PA15|LINE|L1 -61570 NM_001371457 525-225 chr6 92748242 92748514 + 3 NA Intergenic Intergenic 671181 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 720-31 chr16 24488913 24489404 + 3 NA Intergenic L1MEc|LINE|L1 -50408 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 842-45 chr6 159061990 159062361 + 3 NA Intergenic Intergenic -17023 NM_152133 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 397-66 chr12 60912844 60913010 + 3 NA Intergenic Intergenic 1223557 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 390-149 chr17 69871320 69871512 + 3 NA intron (NR_109972, intron 4 of 4) intron (NR_109972, intron 4 of 4) -90291 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 753-17 chr12 133100932 133101402 + 3 NA intron (NM_001300778, intron 5 of 5) L1MC1|LINE|L1 20964 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 610-150 chr6 129779111 129779445 + 3 NA Intergenic L1MEd|LINE|L1 -69101 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 415-43 chr11 38977231 38977402 + 3 NA Intergenic Intergenic 328458 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 230-264 chr4 66316930 66317065 + 3 NA Intergenic Intergenic 40173 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 519-228 chr8 58164036 58164317 + 3 NA Intergenic Intergenic 107925 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 790-10 chr12 92336233 92336703 + 3 NA Intergenic Intergenic -85063 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 790-49 chr7 43336693 43337258 + 3 NA intron (NM_001287059, intron 4 of 27) L1PB4|LINE|L1 185567 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 622-56 chr2 48897196 48897521 + 3 NA Intergenic Intergenic -141634 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 450-168 chr20 31169933 31170186 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -87605 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 602-8 chr10 53380910 53381152 + 3 NA Intergenic Intergenic -609331 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 398-124 chr16 8216715 8216942 + 3 NA Intergenic Intergenic 373010 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 459-27 chr10 29748102 29748335 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -11282 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 546-19 chr10 26332962 26333393 + 3 NA Intergenic PABL_A-int|LTR|ERV1 -105164 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 1026-22 chr5 118066713 118067162 + 3 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -215637 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 575-153 chr5 97604094 97604455 + 3 NA intron (NR_105028, intron 2 of 3) L1PA16|LINE|L1 99578 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 482-139 chr2 205306173 205306361 + 3 NA intron (NM_205863, intron 18 of 21) MLT1D|LTR|ERVL-MaLR -376233 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 517-212 chr5 41053024 41053335 + 3 NA intron (NM_173489, intron 11 of 41) MER46C|DNA|TcMar-Tigger 18163 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 627-103 chr6 76163437 76163784 + 3 NA Intergenic MER112|DNA|hAT-Charlie -90932 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 584-172 chr8 99954636 99955016 + 3 NA Intergenic Intergenic -49756 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 253-150 chr16 52725295 52725496 + 3 NA Intergenic Intergenic -118420 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 725-18 chr12 111008032 111008400 + 3 NA Intergenic MIR3|SINE|MIR -25949 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 528-242 chr7 153701589 153701889 + 3 NA Intergenic (GATA)n|Simple_repeat|Simple_repeat -46394 NM_001364498 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 481-313 chr9 6173189 6173378 + 3 NA Intergenic Intergenic -41866 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 1314-2 chr16 17758176 17758767 + 3 NA Intergenic Intergenic -287511 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 482-157 chr3 9542355 9542541 + 3 NA intron (NM_198560, intron 2 of 3) L1MB8|LINE|L1 11374 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 533-48 chr14 38007951 38008221 + 3 NA Intergenic L1ME2|LINE|L1 -105962 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 345-215 chr18 9703760 9703973 + 3 NA Intergenic Intergenic -4435 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 564-151 chr5 29490479 29490763 + 3 NA Intergenic Intergenic -94645 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 281-84 chr12 26058142 26058316 + 3 NA intron (NM_001164746, intron 2 of 4) intron (NM_001164746, intron 2 of 4) 5665 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 1107-8 chr6 40663680 40664285 + 3 NA Intergenic Intergenic -76618 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 550-3 chr1 24886293 24886549 + 3 NA Intergenic Intergenic 32995 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 1057-10 chr2 81161259 81161786 + 3 NA Intergenic Intergenic 305424 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 547-246 chr8 119335030 119335242 + 3 NA Intergenic L1PREC2|LINE|L1 9965 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 432-262 chr7 13718164 13718364 + 3 NA Intergenic L2|LINE|L2 268250 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 856-38 chr5 30614647 30615071 + 3 NA Intergenic L1ME2|LINE|L1 -578827 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 825-47 chr7 32337994 32338438 + 3 NA intron (NM_001322059, intron 1 of 17) L1MB3|LINE|L1 -38888 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 555-181 chr7 12518316 12518607 + 3 NA intron (NR_136263, intron 1 of 3) L1MA4A|LINE|L1 14064 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 377-62 chr11 14669955 14670127 + 3 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 26237 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 727-66 chr5 119658717 119659104 + 3 NA Intergenic Intergenic 29351 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 435-194 chr5 65001006 65001234 + 3 NA intron (NM_005869, intron 13 of 13) L1M2|LINE|L1 232190 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 299-358 chr5 27540004 27540166 + 3 NA Intergenic L1M5|LINE|L1 67793 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 717-30 chr15 25282778 25283242 + 3 NA intron (NR_146177, intron 146 of 147) intron (NR_146177, intron 146 of 147) 4667 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 500-147 chr2 120260939 120261241 + 3 NA intron (NM_002881, intron 1 of 4) MER5A1|DNA|hAT-Charlie 8238 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 540-202 chr7 115378892 115379082 + 3 NA Intergenic L1MD3|LINE|L1 -147632 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 484-149 chr2 211023350 211023600 + 3 NA Intergenic L1PB1|LINE|L1 405904 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 758-43 chr2 107761991 107762420 + 3 NA intron (NR_126370, intron 2 of 4) A-rich|Low_complexity|Low_complexity 8093 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 617-63 chr2 80026557 80026792 + 3 NA intron (NM_001282598, intron 7 of 17) MIR3|SINE|MIR -160091 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 388-194 chr21 16631415 16631726 + 3 NA non-coding (NR_136541, exon 10 of 10) non-coding (NR_136541, exon 10 of 10) 41333 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 439-164 chr20 52665826 52665980 + 3 NA Intergenic Intergenic 45065 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 1418-4 chr8 137971177 137971898 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 112008 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 597-80 chr2 177471219 177471521 + 3 NA intron (NM_003659, intron 10 of 19) intron (NM_003659, intron 10 of 19) 78597 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 773-3 chr10 95576466 95576891 + 3 NA Intergenic AluJb|SINE|Alu -15307 NM_024991 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 683-20 chr14 94530785 94531204 + 3 NA Intergenic Intergenic -13150 NM_173850 145264 Hs.99476 NM_173850 ENSG00000165953 SERPINA12 OL-64 serpin family A member 12 protein-coding 631-113 chr7 37114801 37115232 + 3 NA intron (NM_001206480, intron 14 of 21) L1MC|LINE|L1 117220 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 536-172 chr4 53755530 53755855 + 3 NA Intergenic L1MA7|LINE|L1 59791 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 372-327 chr3 73468859 73469019 + 3 NA intron (NM_015009, intron 3 of 9) MIRb|SINE|MIR 5693 NM_001303141 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 380-346 chr6 121203643 121203903 + 3 NA intron (NR_104452, intron 23 of 35) intron (NR_104452, intron 23 of 35) 130707 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 214-15 chr1 83029710 83029806 + 3 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -43550 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 678-4 chr1 236779917 236780312 + 3 NA Intergenic L1M4|LINE|L1 -15167 NM_000254 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 449-235 chr6 54777844 54778085 + 3 NA Intergenic Intergenic -68807 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 413-106 chr16 63074000 63074210 + 3 NA Intergenic L1MA4|LINE|L1 -1037667 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 731-45 chr3 74085417 74085813 + 3 NA Intergenic MER102a|DNA|hAT-Charlie 276371 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 248-380 chr7 61950026 61950137 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1353975 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 783-18 chr11 44253571 44253895 + 3 NA Intergenic L1ME1|LINE|L1 56406 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 446-165 chr20 19060560 19060907 + 3 NA Intergenic L1PB1|LINE|L1 -151909 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 1363 chr11 79583437 79584332 + 3 NA Intergenic Intergenic -142854 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 399-12 chr1 160114082 160114244 + 3 NA Intergenic Intergenic -1596 NM_000702 477 Hs.34114 NM_000702 ENSG00000018625 ATP1A2 FHM2|MHP2 ATPase Na+/K+ transporting subunit alpha 2 protein-coding 475-79 chr14 62195254 62195478 + 3 NA Intergenic L1MC1|LINE|L1 -55393 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 504-118 chr2 4983180 4983414 + 3 NA Intergenic Intergenic -327075 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 625-19 chr10 126759603 126760035 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger -89309 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 487-267 chr7 36234439 36234666 + 3 NA intron (NM_030636, intron 2 of 7) AluJb|SINE|Alu 81298 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 598-76 chr2 155211210 155211463 + 3 NA Intergenic Intergenic 512641 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 1036-19 chr3 97635065 97635603 + 3 NA intron (NM_001080448, intron 13 of 17) intron (NM_001080448, intron 13 of 17) -129187 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 372-336 chr3 129919871 129920120 + 3 NA Intergenic HAL1ME|LINE|L1 26124 NR_037893 100507032 Hs.529562 NR_037893 ENSG00000271270 TMCC1-AS1 - TMCC1 antisense RNA 1 (head to head) ncRNA 372-68 chr11 20729042 20729281 + 3 NA intron (NM_201551, intron 2 of 18) L1P4|LINE|L1 59575 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 534-24 chr10 26134399 26134639 + 3 NA intron (NM_017433, intron 20 of 34) L1MC4|LINE|L1 -81788 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 478-292 chr8 88447919 88448205 + 3 NA Intergenic MIRb|SINE|MIR -120579 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 308-404 chr5 159674163 159674358 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 197124 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 600-138 chr8 143170372 143170756 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -9910 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 878 chr1 3052228 3052852 + 3 NA Intergenic Intergenic 15185 NR_015440 440556 Hs.531041 NM_198543 ENSG00000177133 PRDM16-DT LINC00982|lnc-dPrdm16 PRDM16 divergent transcript ncRNA 422-252 chr6 9364545 9364688 + 3 NA Intergenic L1MEd|LINE|L1 712407 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 456-47 chr11 79776806 79777025 + 3 NA Intergenic L2a|LINE|L2 -335885 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 516-121 chr2 52567246 52567452 + 3 NA Intergenic L1PA15|LINE|L1 135266 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 474-263 chr7 33561262 33561526 + 3 NA intron (NM_001362679, intron 21 of 21) intron (NM_001362679, intron 21 of 21) -343521 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 375-294 chr4 85232254 85232397 + 3 NA Intergenic Intergenic -242825 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 430-178 chr21 20137283 20137460 + 3 NA Intergenic MER57D|LTR|ERV1 121314 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 534-93 chr18 13983646 13983955 + 3 NA Intergenic LTR82B|LTR|ERVL -68093 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 538-173 chr4 62342260 62342567 + 3 NA Intergenic L1MEf|LINE|L1 -180648 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 189-17 chr10 48684274 48684404 + 3 NA promoter-TSS (NM_001370154) promoter-TSS (NM_001370154) -534 NM_001370154 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 488-159 chr20 48812414 48812605 + 3 NA intron (NM_020820, intron 1 of 39) intron (NM_020820, intron 1 of 39) 15490 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 400-302 chr6 20884684 20884910 + 3 NA intron (NM_017774, intron 9 of 15) L1MB4|LINE|L1 350340 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 620-68 chr2 147401959 147402425 + 3 NA Intergenic L1M6|LINE|L1 -442325 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 451-224 chr8 4746644 4746918 + 3 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 248133 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 502-160 chr21 14517203 14517536 + 3 NA intron (NM_022136, intron 2 of 7) intron (NM_022136, intron 2 of 7) 28946 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 532-31 chr11 42836076 42836416 + 3 NA Intergenic Intergenic 433123 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 792-59 chr8 52602251 52602810 + 3 NA Intergenic MER41-int|LTR|ERV1 -37100 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 293-153 chr17 56410803 56411002 + 3 NA intron (NM_001370326, intron 8 of 20) L1MA7|LINE|L1 -182797 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 491-77 chr15 60213488 60213855 + 3 NA Intergenic MIRb|SINE|MIR 184315 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 1076-2 chr1 174602187 174602944 + 3 NA intron (NM_001366446, intron 13 of 25) L1M1|LINE|L1 -97974 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 443-128 chr18 11834048 11834350 + 3 NA intron (NM_001369387, intron 5 of 11) Charlie15b|DNA|hAT-Charlie -17214 NM_020412 57132 Hs.656244 NM_020412 ENSG00000255112 CHMP1B C10orf2|C18-ORF2|C18orf2|CHMP1.5|Vps46-2|Vps46B|hVps46-2 charged multivesicular body protein 1B protein-coding 520-159 chr2 176903653 176903916 + 3 NA Intergenic Intergenic 266030 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 466-114 chr19 39072415 39072620 + 3 NA Intergenic AluJr|SINE|Alu -11851 NM_001004318 390928 Hs.448934 NM_001004318 ENSG00000183760 ACP7 PAPL|PAPL1 acid phosphatase 7, tartrate resistant (putative) protein-coding 482-88 chr16 54017743 54017984 + 3 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -21530 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 803-16 chr16 51451593 51451929 + 3 NA Intergenic L1ME3G|LINE|L1 -300489 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 614-2 chr1 36803748 36804038 + 3 NA intron (NM_000831, intron 15 of 15) L1M5|LINE|L1 230622 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 441-220 chr6 33937188 33937384 + 3 NA Intergenic MIR|SINE|MIR 38151 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 469-200 chr4 63206407 63206679 + 3 NA Intergenic Intergenic -1044778 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 657-58 chr20 20950844 20951305 + 3 NA Intergenic Intergenic 155284 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 517-282 chr8 135858318 135858590 + 3 NA Intergenic Intergenic 400998 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 217-380 chr8 134645063 134645235 + 3 NA intron (NM_020863, intron 2 of 15) intron (NM_020863, intron 2 of 15) 47078 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 306-91 chr11 110752554 110752719 + 3 NA Intergenic L1PB2|LINE|L1 -39447 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 410-323 chr8 139579200 139579443 + 3 NA Intergenic L1MC3|LINE|L1 123802 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 469-218 chr5 54083454 54083653 + 3 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -131954 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 1153-7 chr2 14265702 14266324 + 3 NA intron (NR_103814, intron 2 of 3) L2c|LINE|L2 134945 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 569-86 chr2 4826131 4826371 + 3 NA Intergenic Intergenic -170029 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 437-95 chr16 17185546 17185742 + 3 NA intron (NM_022166, intron 5 of 11) intron (NM_022166, intron 5 of 11) 51140 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 1155-2 chr14 62585720 62586141 + 3 NA Intergenic L1ME2z|LINE|L1 -445957 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 663-96 chr6 123242419 123242791 + 3 NA intron (NM_006073, intron 38 of 40) L1M2|LINE|L1 -196999 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 410-26 chr10 12594218 12594379 + 3 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) 15545 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 688-29 chr12 4237256 4237581 + 3 NA Intergenic L1MA4A|LINE|L1 -36344 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 517-267 chr8 91357166 91357464 + 3 NA intron (NM_134266, intron 11 of 18) intron (NM_134266, intron 11 of 18) 107996 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 432-194 chr4 34239100 34239296 + 3 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 30549 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 554-202 chr8 89305349 89305720 + 3 NA Intergenic Intergenic 452177 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 712-17 chr11 50563161 50563566 + 3 NA Intergenic ALR/Alpha|Satellite|centr 154216 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 297-377 chr5 114341672 114341806 + 3 NA Intergenic Intergenic -20331 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 470-230 chr5 155822931 155823115 + 3 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -503734 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 246-82 chr12 672337 672431 + 3 NA Intergenic Intergenic -8939 NM_016533 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 884-24 chr2 220477094 220477513 + 3 NA Intergenic MIR|SINE|MIR -570738 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 264-413 chr8 78941261 78941438 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 103820 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 540-228 chr9 78117092 78117441 + 3 NA Intergenic L1ME3Cz|LINE|L1 -85455 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 515-276 chr9 79516847 79517175 + 3 NA Intergenic Intergenic -54762 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 466-302 chrX 69917531 69917712 + 3 NA intron (NM_001005609, intron 1 of 7) intron (NM_001005609, intron 1 of 7) -105236 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 735-19 chr13 88599744 88600138 + 3 NA Intergenic Intergenic -26912 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 469-110 chr17 58552051 58552337 + 3 NA intron (NR_110810, intron 4 of 4) L2b|LINE|L2 -7866 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 238-118 chr15 81935152 81935231 + 3 NA Intergenic Intergenic 110827 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 358-391 chr5 162600841 162601048 + 3 NA Intergenic L1PA16|LINE|L1 533302 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 1351-5 chr9 131559787 131560619 + 3 NA Intergenic AluSx|SINE|Alu 14680 NM_001365666 642515 NM_001365666 ENSG00000283526 PRRT1B DSPD2|IFITMD8 proline rich transmembrane protein 1B protein-coding 517-209 chr5 16650926 16651302 + 3 NA Intergenic Intergenic -34056 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 683-71 chr6 52179227 52179632 + 3 NA Intergenic L1ME4a|LINE|L1 -6946 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 875-29 chr5 15223006 15223593 + 3 NA intron (NR_109944, intron 2 of 2) L1M4a1|LINE|L1 43261 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 468-167 chr2 174833130 174833287 + 3 NA intron (NM_001025201, intron 7 of 12) L1MEc|LINE|L1 14410 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 536-133 chr2 175663477 175663820 + 3 NA Intergenic L2c|LINE|L2 338619 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 607-114 chr5 17312719 17313144 + 3 NA Intergenic Intergenic 74379 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 904-26 chr2 185566630 185567160 + 3 NA Intergenic L1ME3|LINE|L1 171824 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 567-17 chr1 215037655 215038014 + 3 NA intron (NM_001017424, intron 1 of 6) L1MC3|LINE|L1 32292 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 478-146 chr2 124600340 124600542 + 3 NA intron (NM_130773, intron 11 of 23) MLT2F|LTR|ERVL 575154 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 520-80 chr14 43084911 43085213 + 3 NA Intergenic MIR|SINE|MIR 1422221 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 544-27 chr10 39266620 39266907 + 3 NA Intergenic ALR/Alpha|Satellite|centr 570167 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 498-111 chr19 47980805 47981111 + 3 NA intron (NM_001128326, intron 1 of 5) intron (NM_001128326, intron 1 of 5) 11212 NM_001128326 100131137 Hs.651072 NM_001128326 ENSG00000188334 BSPH1 BSP1|ELSPBP2 binder of sperm protein homolog 1 protein-coding 583-23 chr10 115999008 115999276 + 3 NA Intergenic Intergenic 195647 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 437-250 chr7 22771375 22771610 + 3 NA Intergenic L1MB3|LINE|L1 -43872 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 596-92 chr2 80516582 80516924 + 3 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 203374 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 391-363 chr8 118157074 118157291 + 3 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -45363 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 354-376 chr5 67793903 67794070 + 3 NA intron (NR_130779, intron 1 of 2) intron (NR_130779, intron 1 of 2) 773 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 429-233 chr5 45919134 45919339 + 3 NA Intergenic ALR/Alpha|Satellite|centr -222856 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 463-141 chr2 81904816 81904991 + 3 NA Intergenic L1MC3|LINE|L1 -437957 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 308-361 chr4 134240289 134240480 + 3 NA Intergenic Intergenic -38595 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 745-27 chr2 14826417 14826710 + 3 NA Intergenic Intergenic 193846 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 419-170 chr22 29234433 29234611 + 3 NA intron (NM_001267895, intron 12 of 14) intron (NM_001267895, intron 12 of 14) 28626 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 616-132 chr5 45868301 45868707 + 3 NA Intergenic Intergenic -172124 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 513-154 chr2 182571393 182571701 + 3 NA Intergenic Intergenic -48702 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 596-115 chr21 23649112 23649437 + 3 NA Intergenic Intergenic -264439 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 611-135 chr7 50217422 50217745 + 3 NA Intergenic Intergenic -86481 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 396-176 chr2 130885302 130885552 + 3 NA intron (NM_001367493, intron 1 of 13) MSTD|LTR|ERVL-MaLR 48513 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 369-196 chr2 65840519 65840764 + 3 NA Intergenic L2a|LINE|L2 -408042 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 735-84 chr8 136221874 136222304 + 3 NA Intergenic L1PA16|LINE|L1 -308709 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 494-131 chr2 84949199 84949426 + 3 NA Intergenic AluSc|SINE|Alu -21849 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 565-99 chr20 39199556 39199857 + 3 NA Intergenic L2c|LINE|L2 25042 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 520-131 chr18 76294512 76294784 + 3 NA Intergenic L1M1|LINE|L1 85138 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 511-284 chrX 21317515 21317725 + 3 NA Intergenic Intergenic -56798 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 512-24 chr1 238766764 238767126 + 3 NA Intergenic Intergenic -280928 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 450-317 chr9 9053470 9053684 + 3 NA intron (NM_002839, intron 10 of 45) MLT1C|LTR|ERVL-MaLR 195559 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 473-292 chr9 32097410 32097582 + 3 NA Intergenic MLT2B4|LTR|ERVL -287107 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 346-429 chr6 84486210 84486417 + 3 NA Intergenic L1MB7|LINE|L1 -11384 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 574-122 chr4 36933129 36933474 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -68478 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 363-290 chr3 95772747 95772900 + 3 NA Intergenic L1PA17|LINE|L1 -89630 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 607-156 chr9 78750532 78750826 + 3 NA Intergenic L1MA7|LINE|L1 394987 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 415-162 chr21 34012414 34012652 + 3 NA Intergenic Intergenic 36151 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 382-242 chr20 63518838 63519087 + 3 NA Intergenic Intergenic -1779 NR_148427 79144 Hs.79625 NM_024299 ENSG00000125534 PPDPF C20orf149|dJ697K14.9|exdpf pancreatic progenitor cell differentiation and proliferation factor protein-coding 782-3 chr1 196739894 196740315 + 3 NA intron (NM_000186, intron 17 of 21) THE1C|LTR|ERVL-MaLR -34696 NM_001166624 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 502-112 chr17 57698485 57698736 + 3 NA Intergenic Intergenic 46689 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 369-50 chr10 107374958 107375124 + 3 NA Intergenic Intergenic -210335 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 435-228 chr7 52820869 52821084 + 3 NA Intergenic L1MA9|LINE|L1 -214657 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 452-101 chr16 54693750 54693946 + 3 NA Intergenic Intergenic 154385 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 767-39 chr5 12675525 12676064 + 3 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 7935 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 314-262 chr2 14658293 14658426 + 3 NA Intergenic L1MEf|LINE|L1 25642 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 564-150 chr5 13924554 13924878 + 3 NA intron (NM_001369, intron 3 of 78) MIR|SINE|MIR 19764 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 588-147 chr7 64990991 64991345 + 3 NA promoter-TSS (NM_015852) promoter-TSS (NM_015852) -132 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 696-97 chr7 48435317 48435714 + 3 NA intron (NM_152701, intron 42 of 61) L1MB3|LINE|L1 264057 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 598 chr1 4252294 4252674 + 3 NA Intergenic Intergenic -159567 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 508-209 chr6 63338393 63338634 + 3 NA Intergenic L1M2|LINE|L1 -18530 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 657-32 chr15 61953937 61954237 + 3 NA intron (NM_001018088, intron 38 of 81) intron (NM_001018088, intron 38 of 81) 106360 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 395-330 chr8 49858740 49858994 + 3 NA Intergenic Intergenic -50929 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 364-305 chr4 63487153 63487313 + 3 NA Intergenic L2|LINE|L2 922217 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1132-3 chr12 14230333 14230946 + 3 NA Intergenic L1M2|LINE|L1 -134993 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 329-120 chr12 45014305 45014451 + 3 NA TTS (NM_001004329) TTS (NM_001004329) 36721 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 462-261 chr7 36577514 36577793 + 3 NA intron (NM_001177507, intron 11 of 19) intron (NM_001177507, intron 11 of 19) 22467 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 530-267 chr8 144936524 144936717 + 3 NA intron (NM_006958, intron 2 of 2) L1MB5|LINE|L1 14260 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 548-219 chr7 113485969 113486225 + 3 NA Intergenic L2c|LINE|L2 -367515 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 329-348 chr3 9235127 9235299 + 3 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) 14433 NM_001033117 9901 Hs.654743 NM_014850 ENSG00000196220 SRGAP3 ARHGAP14|MEGAP|SRGAP2|WRP SLIT-ROBO Rho GTPase activating protein 3 protein-coding 515-42 chr11 55071943 55072168 + 3 NA Intergenic ALR/Alpha|Satellite|centr -190100 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 249-279 chr3 178394606 178394734 + 3 NA Intergenic L1ME3A|LINE|L1 -24531 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 474-173 chr21 29121707 29121976 + 3 NA promoter-TSS (NM_001371370) promoter-TSS (NM_001371370) -149 NM_001371376 692-55 chr2 236791228 236791726 + 3 NA Intergenic Intergenic 221652 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 475-230 chr5 100648198 100648422 + 3 NA Intergenic Intergenic 112936 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 322-447 chr6 8971511 8971729 + 3 NA Intergenic L1MEf|LINE|L1 319411 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 500-131 chr2 78281334 78281535 + 3 NA intron (NR_110288, intron 1 of 3) THE1B|LTR|ERVL-MaLR 9297 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 658-53 chr17 29136189 29136524 + 3 NA intron (NM_001346765, intron 2 of 42) intron (NM_001346765, intron 2 of 42) 4033 NM_001346768 399687 Hs.462590 NM_078471 ENSG00000196535 MYO18A MAJN|MYSPDZ|SP-R210|SPR210 myosin XVIIIA protein-coding 451-181 chr5 101420676 101420880 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -517496 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 303-44 chr10 67260556 67260719 + 3 NA intron (NM_001127384, intron 5 of 17) MamTip2|DNA|hAT-Tip100 142773 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 865-39 chr6 65040803 65041205 + 3 NA intron (NM_001292009, intron 13 of 43) MLT1H2-int|LTR|ERVL-MaLR -260414 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 448-303 chr9 106222532 106222757 + 3 NA Intergenic L3|LINE|CR1 -378284 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 825-54 chr8 101215034 101215534 + 3 NA Intergenic MER74B|LTR|ERVL -9220 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 281-267 chr21 19039904 19040105 + 3 NA Intergenic HAL1|LINE|L1 -280192 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 838-3 chr1 177527142 177527762 + 3 NA Intergenic Intergenic -173072 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 898-30 chr5 88623617 88624114 + 3 NA intron (NR_152235, intron 2 of 3) L1MC3|LINE|L1 43074 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 532-223 chr6 54410508 54410780 + 3 NA Intergenic L1PA3|LINE|L1 102203 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 472-201 chr3 4960873 4961131 + 3 NA intron (NR_125915, intron 1 of 3) MER5A|DNA|hAT-Charlie -18435 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 592-144 chr5 66579211 66579507 + 3 NA Intergenic L1ME4a|LINE|L1 -17034 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 510-29 chr10 36065640 36065948 + 3 NA Intergenic Intergenic 287492 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 1130-7 chr5 50246171 50246738 + 3 NA Intergenic ALR/Alpha|Satellite|centr 194834 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 426-7 chr1 71133287 71133479 + 3 NA intron (NR_046217, intron 2 of 3) L1MA9|LINE|L1 52059 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 418-127 chr2 134985031 134985209 + 3 NA intron (NM_001018047, intron 6 of 8) intron (NM_001018047, intron 6 of 8) 38529 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 217-209 chr21 15921923 15922095 + 3 NA Intergenic MER65-int|LTR|ERV1 -148479 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 437-286 chr8 134933203 134933405 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 83369 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 510-33 chr10 95176020 95176307 + 3 NA Intergenic MIR|SINE|MIR -18037 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 310-25 chr1 189770436 189770658 + 3 NA Intergenic Intergenic 705463 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 835-17 chr14 71195936 71196235 + 3 NA Intergenic Intergenic -124391 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 347-165 chr16 53537077 53537233 + 3 NA Intergenic Intergenic -33851 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 490-14 chr1 101000208 101000518 + 3 NA intron (NM_001077394, intron 5 of 7) Charlie10|DNA|hAT-Charlie 25421 NM_001077395 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 462-291 chr8 139354462 139354733 + 3 NA Intergenic L1MEf|LINE|L1 348526 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 558-135 chr3 84479964 84480278 + 3 NA Intergenic L1MA5|LINE|L1 389454 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 670-70 chr2 221856858 221857283 + 3 NA Intergenic Intergenic -282868 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 377-295 chr4 138554741 138554969 + 3 NA Intergenic MIRb|SINE|MIR 245144 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 467-46 chr11 42197999 42198310 + 3 NA intron (NR_038309, intron 4 of 5) intron (NR_038309, intron 4 of 5) 55536 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 466-249 chr7 41218064 41218456 + 3 NA Intergenic Intergenic 116656 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 467-267 chr7 62985121 62985281 + 3 NA Intergenic ALR/Alpha|Satellite|centr 318855 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 478-269 chr7 53736047 53736326 + 3 NA intron (NR_038371, intron 4 of 5) L1MC3|LINE|L1 75745 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 293-236 chr21 18631003 18631171 + 3 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 55077 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 882-41 chr7 136232504 136232909 + 3 NA Intergenic Intergenic -255347 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 361-446 chr8 83710467 83710660 + 3 NA Intergenic LTR16A|LTR|ERVL 306805 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 362-159 chr14 85747219 85747376 + 3 NA Intergenic Intergenic -187381 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 420-231 chr5 52488636 52488883 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie -299157 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 599-121 chr6 162315205 162315552 + 3 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -411754 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 560-55 chr15 58117495 58117718 + 3 NA Intergenic Helitron2Na_Mam|RC?|Helitron? -20563 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 618-95 chr5 43635748 43636151 + 3 NA intron (NM_012343, intron 7 of 21) MLT1J1|LTR|ERVL-MaLR -32719 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 361-324 chr4 73973628 73973924 + 3 NA Intergenic L1PREC2|LINE|L1 8251 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 433-303 chr9 83193463 83193737 + 3 NA Intergenic MIRb|SINE|MIR 73668 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 521-131 chr2 185399135 185399452 + 3 NA Intergenic Intergenic -232221 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 545-195 chr5 154171780 154172096 + 3 NA Intergenic Intergenic -18795 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 498-114 chr2 13880648 13880951 + 3 NA Intergenic L1MA5A|LINE|L1 520159 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 281-293 chr3 118028186 118028304 + 3 NA Intergenic L1MA1|LINE|L1 -337320 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 577-171 chr6 98310956 98311268 + 3 NA Intergenic Intergenic 286581 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 377-257 chr21 28270335 28270535 + 3 NA Intergenic Intergenic -41768 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 747-44 chr3 124643785 124644225 + 3 NA intron (NM_007064, intron 4 of 26) L1MA9|LINE|L1 59346 NM_001323001 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 438-250 chr7 15277340 15277566 + 3 NA intron (NM_001004320, intron 12 of 12) L1PA5|LINE|L1 284562 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 717-33 chr16 86643061 86643384 + 3 NA Intergenic Intergenic 64713 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 395-99 chr14 76564111 76564338 + 3 NA Intergenic Intergenic 192877 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 493-4 chr1 40519652 40519896 + 3 NA Intergenic L1MA5A|LINE|L1 11055 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 245-70 chr11 38241646 38241802 + 3 NA Intergenic Intergenic 303123 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 496-181 chr3 104476763 104477086 + 3 NA Intergenic L1PREC2|LINE|L1 -889789 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 459-120 chr18 75662026 75662332 + 3 NA Intergenic L1M4a1|LINE|L1 50224 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 590-52 chr14 72757116 72757413 + 3 NA intron (NM_001280544, intron 2 of 9) L3|LINE|CR1 135385 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 464-124 chr2 103324646 103324914 + 3 NA Intergenic Intergenic -340351 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 481-158 chr2 181344758 181345076 + 3 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) -39265 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 407-141 chr2 71309535 71309749 + 3 NA Intergenic L1MD2|LINE|L1 -22113 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 246-179 chr19 52441996 52442111 + 3 NA 3' UTR (NM_001351679, exon 4 of 4) 3' UTR (NM_001351679, exon 4 of 4) -11500 NM_001366182 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 905-32 chr8 124870978 124871566 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -49214 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 428-15 chr1 193648288 193648449 + 3 NA Intergenic L1MA3|LINE|L1 343623 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 365-180 chr2 17053678 17053839 + 3 NA Intergenic Intergenic -387924 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 292-52 chr10 82471272 82471447 + 3 NA intron (NR_163253, intron 3 of 10) MER61A|LTR|ERV1 -238439 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 605-115 chr7 118558218 118558559 + 3 NA Intergenic L1MB7|LINE|L1 333684 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 333-351 chr3 74988639 74988814 + 3 NA Intergenic Intergenic -225750 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 583-147 chr6 55723607 55723869 + 3 NA Intergenic Intergenic -144524 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 469-254 chr6 148712495 148712688 + 3 NA Intergenic HAL1M8|LINE|L1 -34439 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 522-274 chrX 58366903 58367161 + 3 NA Intergenic ALR/Alpha|Satellite|centr -456399 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 364-142 chr15 27505081 27505235 + 3 NA intron (NM_033223, intron 6 of 9) L1MD3|LINE|L1 -343839 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 804-48 chr4 61761491 61761923 + 3 NA intron (NM_001371343, intron 8 of 23) AluJr|SINE|Alu 400058 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 162-86 chr3 85694016 85694093 + 3 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -32428 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 551-219 chr8 105124732 105125057 + 3 NA Intergenic Intergenic -193544 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 576-128 chr5 12841582 12841931 + 3 NA Intergenic Intergenic 173897 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 336-241 chr19 30348327 30348456 + 3 NA Intergenic Intergenic -23993 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 535-66 chr13 64696665 64697072 + 3 NA Intergenic Intergenic -620857 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 863-15 chr17 61459079 61459568 + 3 NA intron (NM_001321120, intron 3 of 8) MIRc|SINE|MIR 2835 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 332-102 chr11 97506564 97506717 + 3 NA Intergenic Intergenic 998215 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 473-296 chr9 96611265 96611486 + 3 NA intron (NR_147239, intron 1 of 14) intron (NR_147239, intron 1 of 14) 8468 NM_001351567 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 295-469 chr8 88875894 88876096 + 3 NA Intergenic Intergenic -548512 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 603-41 chr13 62497463 62497724 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR 173936 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 479-75 chr15 92638072 92638301 + 3 NA intron (NM_207446, intron 1 of 2) intron (NM_207446, intron 1 of 2) 17589 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 240-303 chr3 181752787 181752902 + 3 NA Intergenic Intergenic 40919 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 515-151 chr21 43759751 43760063 + 3 NA 3' UTR (NM_001331030, exon 10 of 10) 3' UTR (NM_001331030, exon 10 of 10) 16468 NM_000100 1476 Hs.695 NM_000100 ENSG00000160213 CSTB CPI-B|CST6|EPM1|EPM1A|PME|STFB|ULD cystatin B protein-coding 665-67 chr4 66649156 66649580 + 3 NA Intergenic Intergenic 372544 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 870-12 chr19 22856237 22856725 + 3 NA intron (NM_001349726, intron 3 of 3) intron (NM_001349726, intron 3 of 3) 24190 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 389-218 chr22 46442401 46442598 + 3 NA intron (NM_014246, intron 2 of 34) LTR16|LTR|ERVL 95121 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 637-10 chr1 171069399 171069774 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -21319 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 538-160 chr3 168153057 168153257 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -57233 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 301-35 chr10 32606153 32606324 + 3 NA intron (NM_001321115, intron 19 of 43) MSTB-int|LTR|ERVL-MaLR 160098 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 581-129 chr5 6802276 6802502 + 3 NA intron (NR_146281, intron 1 of 1) intron (NR_146281, intron 1 of 1) 6509 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 677-50 chr20 25165491 25165853 + 3 NA Intergenic L1PA7|LINE|L1 -16882 NR_027091 284798 Hs.334934 NR_027091 ENSG00000230725 LOC284798 - uncharacterized LOC284798 ncRNA 704-37 chr2 15854241 15854650 + 3 NA Intergenic AluSx3|SINE|Alu -65954 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 669-17 chr11 93332320 93332658 + 3 NA intron (NM_181645, intron 2 of 13) intron (NM_181645, intron 2 of 13) 1772 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 263-30 chr1 195404554 195404666 + 3 NA Intergenic CR1-16_AMi|LINE|CR1 684105 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 647-74 chr4 71580767 71581209 + 3 NA Intergenic HAL1|LINE|L1 203091 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 451-102 chr18 34539982 34540206 + 3 NA intron (NM_001198945, intron 1 of 10) intron (NM_001198945, intron 1 of 10) 46782 NM_001392 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 425-151 chr2 163273459 163273710 + 3 NA Intergenic L1M3c|LINE|L1 -434817 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 268-300 chr4 179892184 179892341 + 3 NA Intergenic MIR|SINE|MIR 1266887 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 318-185 chr15 81011924 81012095 + 3 NA Intergenic Intergenic 11086 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 399-195 chr22 34728697 34728891 + 3 NA Intergenic L1MA10|LINE|L1 269122 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 529-213 chr8 57156068 57156262 + 3 NA Intergenic Intergenic -62111 NR_038235 100507651 Hs.371831 NR_038235 ENSG00000253301 LINC01606 - long intergenic non-protein coding RNA 1606 ncRNA 530-213 chr6 39875719 39875922 + 3 NA intron (NM_015345, intron 11 of 24) intron (NM_015345, intron 11 of 24) 21560 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 280-141 chr15 88069807 88069986 + 3 NA intron (NM_001007156, intron 13 of 15) intron (NM_001007156, intron 13 of 15) -123628 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 573-184 chr7 46817322 46817624 + 3 NA Intergenic Intergenic -120351 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 766-20 chr14 88264647 88265108 + 3 NA intron (NM_021161, intron 1 of 6) intron (NM_021161, intron 1 of 6) 6034 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 506-227 chr5 51459251 51459443 + 3 NA Intergenic Intergenic 75899 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 555-77 chr19 36457526 36457766 + 3 NA intron (NM_001145345, intron 4 of 4) AluSq|SINE|Alu 31789 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 424-51 chr12 28613130 28613389 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -422521 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 797-11 chr11 88137541 88137899 + 3 NA intron (NM_022337, intron 2 of 2) HAL1|LINE|L1 37723 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 1080-12 chr17 69057246 69057833 + 3 NA intron (NM_080283, intron 1 of 38) intron (NM_080283, intron 1 of 38) 3388 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 584-101 chr3 55581905 55582196 + 3 NA intron (NM_015576, intron 16 of 16) L2c|LINE|L2 77419 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 389-85 chr12 112992090 112992275 + 3 NA intron (NM_002535, intron 2 of 9) AluJr4|SINE|Alu 13663 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 559-127 chr3 170653321 170653662 + 3 NA intron (NR_135556, intron 2 of 5) MER33|DNA|hAT-Charlie -67416 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 657-15 chr10 75934048 75934463 + 3 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 151494 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 533-71 chr16 26074810 26075252 + 3 NA intron (NM_006040, intron 1 of 1) AluSc|SINE|Alu 49794 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 622-47 chr18 42227935 42228173 + 3 NA intron (NR_046454, intron 3 of 6) intron (NR_046454, intron 3 of 6) 41386 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 459-312 chr8 136409920 136410231 + 3 NA Intergenic Intergenic -120723 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 747-45 chr3 175915829 175916359 + 3 NA Intergenic Intergenic -139761 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 379-348 chr8 107175982 107176238 + 3 NA Intergenic L1MB8|LINE|L1 160405 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 561-134 chr3 87228861 87229201 + 3 NA intron (NM_001244644, intron 1 of 4) intron (NM_001244644, intron 1 of 4) 1722 NM_014043 25978 Hs.476930 NM_014043 ENSG00000083937 CHMP2B ALS17|CHMP2.5|DMT1|VPS2-2|VPS2B charged multivesicular body protein 2B protein-coding 562-42 chr12 8144708 8144977 + 3 NA Intergenic L1PA16|LINE|L1 -9990 NR_036440 642559 Hs.646545 NR_036440 ENSG00000235602 POU5F1P3 OCT3|OCT4|OCT4-pg3|OTF-3|OTF3|OTF3L|Oct-3|Oct-4|POU5F1|POU5F1L|POU5FLC12 POU class 5 homeobox 1 pseudogene 3 pseudo 513-66 chr13 51013059 51013466 + 3 NA intron (NR_003923, intron 12 of 16) L1ME2|LINE|L1 52895 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 274-19 chr1 184454086 184454280 + 3 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 67154 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 454-353 chrX 99213813 99214071 + 3 NA Intergenic Intergenic 1196331 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 344-284 chr20 55996201 55996356 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 9241 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 403-310 chr8 112427423 112427611 + 3 NA intron (NM_052900, intron 31 of 68) THE1C|LTR|ERVL-MaLR -215976 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 512-255 chr7 40891567 40891864 + 3 NA Intergenic L1M4c|LINE|L1 88224 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 601-56 chr17 33820116 33820506 + 3 NA intron (NM_001094, intron 1 of 9) Charlie5|DNA|hAT-Charlie -286551 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 954-32 chr3 40684374 40684846 + 3 NA Intergenic L2c|LINE|L2 159650 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 256-352 chr6 19090801 19090964 + 3 NA intron (NR_110860, intron 8 of 10) HAL1ME|LINE|L1 89598 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 761-22 chr19 43862697 43863031 + 3 NA Intergenic Charlie23a|DNA|hAT-Charlie 17272 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 904-11 chr13 64780432 64781084 + 3 NA Intergenic Intergenic -704747 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 828-2 chr1 34242139 34242654 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 65489 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 617-44 chr15 62564990 62565457 + 3 NA Intergenic Intergenic 79958 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 441-218 chr6 15818500 15818664 + 3 NA Intergenic Intergenic -155524 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 846-35 chr4 43652543 43653114 + 3 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -160285 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 617-77 chr21 19818438 19818752 + 3 NA Intergenic Intergenic 81160 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 462-254 chr7 4512794 4513040 + 3 NA Intergenic AluSp|SINE|Alu -169378 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 437-258 chr7 73961556 73961813 + 3 NA Intergenic L1MEf|LINE|L1 -66105 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 478-50 chr11 100267678 100267877 + 3 NA intron (NM_001243270, intron 16 of 23) L2a|LINE|L2 -419511 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 610-180 chr9 106342680 106342913 + 3 NA Intergenic MIRb|SINE|MIR -258132 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 431-263 chr7 9645148 9645426 + 3 NA Intergenic Intergenic 11017 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 296-142 chr14 64324223 64324372 + 3 NA intron (NM_001291712, intron 2 of 13) intron (NM_001291712, intron 2 of 13) 14253 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 575-20 chr10 54919650 54920047 + 3 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -118557 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 635-36 chr16 66998802 66999152 + 3 NA intron (NM_001364782, intron 2 of 13) L2|LINE|L2 -1562 NM_001190202 283848 Hs.346947 NM_173815 ENSG00000172824 CES4A CES6|CES8 carboxylesterase 4A protein-coding 414-243 chr4 95977726 95977952 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 137746 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 573-182 chr7 41920143 41920534 + 3 NA Intergenic L1MEi|LINE|L1 -217248 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 408-213 chr3 104024911 104025125 + 3 NA Intergenic Intergenic -500902 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 331-237 chr19 43846230 43846453 + 3 NA intron (NM_181845, intron 6 of 6) intron (NM_181845, intron 6 of 6) 19020 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 409-81 chr14 79726111 79726287 + 3 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) 446819 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 352-281 chr20 42074318 42074544 + 3 NA 3' UTR (NM_007050, exon 31 of 31) 3' UTR (NM_007050, exon 31 of 31) -456054 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 550-31 chr10 59212738 59213145 + 3 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 35474 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 716-35 chr2 118933018 118933430 + 3 NA Intergenic L1M4c|LINE|L1 -8945 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 509-109 chr2 37821095 37821284 + 3 NA Intergenic Intergenic 8522 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 372-128 chr13 74234101 74234322 + 3 NA intron (NR_144451, intron 1 of 1) intron (NR_144451, intron 1 of 1) 2767 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 409-139 chr2 51615517 51615674 + 3 NA intron (NR_135237, intron 5 of 10) THE1C-int|LTR|ERVL-MaLR 582994 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 234-241 chr3 89816701 89816815 + 3 NA Intergenic L1PA14|LINE|L1 709137 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 229-302 chr5 67309219 67309309 + 3 NA Intergenic L2a|LINE|L2 -112465 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 430-114 chr17 68664675 68664913 + 3 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 36640 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 558-23 chr10 76596672 76597030 + 3 NA Intergenic Intergenic -291193 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 574-10 chr1 227667848 227668194 + 3 NA intron (NR_102302, intron 5 of 5) Charlie13a|DNA|hAT-Charlie 29686 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 797-13 chr11 109906100 109906487 + 3 NA Intergenic Intergenic -187099 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 1044-7 chr15 95707639 95708026 + 3 NA Intergenic Intergenic 274739 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 642-57 chr2 126456592 126456970 + 3 NA Intergenic L1ME4c|LINE|L1 -199154 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 542-225 chr8 112431309 112431551 + 3 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -212063 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 471-239 chr6 139560777 139560951 + 3 NA Intergenic L1M1|LINE|L1 -86268 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 518-17 chr1 241082642 241083007 + 3 NA intron (NM_001350116, intron 3 of 16) L1MA4|LINE|L1 -49448 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 854-3 chr1 69012352 69012811 + 3 NA Intergenic L1ME2z|LINE|L1 -43317 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 842-7 chr10 43982577 43983018 + 3 NA Intergenic Intergenic 70395 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 695-37 chr16 62619808 62620145 + 3 NA Intergenic MIR3|SINE|MIR -583538 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 509-16 chr1 227709207 227709516 + 3 NA Intergenic L1M5|LINE|L1 -11654 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 1464-4 chr3 89117245 89117946 + 3 NA intron (NM_182644, intron 1 of 6) intron (NM_182644, intron 1 of 6) 9974 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 856-17 chr14 82137307 82137719 + 3 NA Intergenic Intergenic -394375 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 427-119 chr2 81695027 81695237 + 3 NA Intergenic Intergenic -228186 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 841 chr1 54156392 54156911 + 3 NA Intergenic AluSx1|SINE|Alu -3470 NM_001353655 200008 NM_201546 ENSG00000157211 CDCP2 - CUB domain containing protein 2 protein-coding 816-41 chr6 61508238 61508708 + 3 NA Intergenic ALR/Alpha|Satellite|centr -65657 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 464-144 chr20 24191151 24191334 + 3 NA Intergenic L1MB8|LINE|L1 -8525 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 622-147 chr8 137807635 137808029 + 3 NA Intergenic Intergenic 275713 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 380-339 chr6 54606236 54606411 + 3 NA Intergenic L1PA8A|LINE|L1 -240448 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 245-351 chr8 106304221 106304326 + 3 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 34095 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 413-182 chr3 21771906 21772108 + 3 NA Intergenic L1MB2|LINE|L1 -20797 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 696-116 chrX 63621478 63621734 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 49896 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 453-268 chr7 130767924 130768085 + 3 NA Intergenic L1M1|LINE|L1 -33971 NM_138693 136259 Hs.125240 NM_138693 ENSG00000266265 KLF14 BTEB5 Kruppel like factor 14 protein-coding 453-56 chr12 77809609 77809801 + 3 NA Intergenic Intergenic -21189 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 424-11 chr1 159393993 159394231 + 3 NA Intergenic L1MB7|LINE|L1 -3353 NM_001363557 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 784-37 chr3 95208170 95208609 + 3 NA Intergenic L1MC3|LINE|L1 270126 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 844-9 chr11 78586695 78587230 + 3 NA Intergenic Intergenic -12098 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 507-171 chr3 161043513 161043720 + 3 NA intron (NR_134243, intron 4 of 5) MIRc|SINE|MIR 61116 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 482-3 chr1 45064030 45064311 + 3 NA intron (NM_020883, intron 2 of 13) intron (NM_020883, intron 2 of 13) 51916 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 426-252 chr5 140760158 140760303 + 3 NA Intergenic L1PA5|LINE|L1 -25906 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 470-180 chr3 109262545 109262842 + 3 NA Intergenic LTR40a|LTR|ERVL 53824 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 373-12 chr1 72918168 72918331 + 3 NA Intergenic L1MA8|LINE|L1 -387921 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 821-50 chr6 11706311 11706670 + 3 NA Intergenic Intergenic 72557 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 545-128 chr2 238659952 238660165 + 3 NA Intergenic L1M5|LINE|L1 -104559 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 423-88 chr15 91677622 91677835 + 3 NA Intergenic Intergenic -175980 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 864-26 chr3 7554412 7554838 + 3 NA intron (NM_000844, intron 7 of 9) MLT1J2|LTR|ERVL-MaLR -19341 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 304-24 chr1 168533486 168533607 + 3 NA Intergenic Intergenic 10451 NM_003175 6846 Hs.458346 NM_003175 ENSG00000143185 XCL2 SCM-1b|SCM1B|SCYC2 X-C motif chemokine ligand 2 protein-coding 732-42 chr2 17807148 17807509 + 3 NA Intergenic Intergenic -9132 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 871-34 chr7 33852683 33853218 + 3 NA Intergenic Intergenic -51965 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 416-78 chr11 102572693 102572912 + 3 NA Intergenic Intergenic -42055 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 332-58 chr10 44191896 44192118 + 3 NA Intergenic L1MC1|LINE|L1 -100743 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 515-98 chr18 56084266 56084557 + 3 NA intron (NR_040026, intron 8 of 8) intron (NR_040026, intron 8 of 8) 42133 NR_146510 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 756-68 chr9 1900510 1900828 + 3 NA Intergenic L1PA16|LINE|L1 -114678 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 811-44 chr8 72453286 72453831 + 3 NA Intergenic L1PA17|LINE|L1 -83667 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 370-71 chr10 120714096 120714248 + 3 NA Intergenic Intergenic 116223 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 616-183 chrX 78590324 78590736 + 3 NA Intergenic L1MA1|LINE|L1 68798 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 779-44 chr5 133671751 133672224 + 3 NA Intergenic LTR10C|LTR|ERV1 -59446 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 509-257 chr8 112395022 112395263 + 3 NA intron (NM_001363185, intron 31 of 66) intron (NM_001363185, intron 31 of 66) -248351 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 526-31 chr11 8043385 8043684 + 3 NA intron (NM_003320, intron 2 of 12) L1MB8|LINE|L1 4901 NM_003320 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 212-328 chr8 118196576 118196687 + 3 NA non-coding (NR_109794, exon 5 of 5) non-coding (NR_109794, exon 5 of 5) -84812 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 605-75 chr3 44529792 44530066 + 3 NA Intergenic Intergenic -19312 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 641-90 chr4 125784787 125785076 + 3 NA Intergenic Intergenic 277672 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 660-121 chrX 88292511 88292933 + 3 NA Intergenic L1MA3|LINE|L1 -454503 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 308-33 chr1 182689310 182689527 + 3 NA Intergenic Intergenic -16486 NM_033345 85397 Hs.20982 NM_033345 ENSG00000135824 RGS8 - regulator of G protein signaling 8 protein-coding 500-163 chr20 12625344 12625578 + 3 NA Intergenic L1MA9|LINE|L1 311502 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 638-45 chr15 60068358 60068734 + 3 NA Intergenic Intergenic 64235 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 509-198 chr5 80243425 80243740 + 3 NA intron (NR_126061, intron 1 of 13) L3|LINE|CR1 12466 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 436-178 chr3 25295943 25296178 + 3 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -44742 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 655-53 chr2 17032371 17032743 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -366723 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 231-277 chr5 36155157 36155254 + 3 NA intron (NM_001243120, intron 2 of 7) U6|snRNA|snRNA 3094 NM_005983 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 541-223 chr7 126158924 126159236 + 3 NA Intergenic Intergenic -894789 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 749-80 chr5 150931074 150931362 + 3 NA non-coding (NR_026867, exon 5 of 5) non-coding (NR_026867, exon 5 of 5) 15366 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 372-69 chr11 28928882 28929043 + 3 NA Intergenic Intergenic -451414 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 1110-2 chr10 119594766 119595302 + 3 NA intron (NM_001323970, intron 1 of 12) intron (NM_001323970, intron 1 of 12) 1995 NM_001323965 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 887-32 chr8 129242706 129243220 + 3 NA Intergenic MIR|SINE|MIR -1723 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 440-258 chr8 138755230 138755440 + 3 NA intron (NM_152888, intron 20 of 64) intron (NM_152888, intron 20 of 64) 158706 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 280-344 chr6 41995532 41995695 + 3 NA intron (NM_001136017, intron 1 of 4) L1ME4c|LINE|L1 53281 NM_001136126 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 405-89 chr14 84685513 84685685 + 3 NA Intergenic Intergenic -586333 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 967-12 chr2 152259841 152260229 + 3 NA Intergenic Intergenic -75139 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 652-103 chr6 95674469 95674888 + 3 NA Intergenic Intergenic 97143 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 490-100 chr15 97495745 97496068 + 3 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 25905 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 390-321 chr6 50743258 50743444 + 3 NA intron (NM_172238, intron 5 of 7) intron (NM_172238, intron 5 of 7) 29807 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 579-12 chr10 2380537 2380873 + 3 NA Intergenic Intergenic -65631 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 575-33 chr11 111153982 111154241 + 3 NA Intergenic L1ME2|LINE|L1 -56793 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 362-269 chr3 44731347 44731556 + 3 NA intron (NM_001258280, intron 1 of 2) AmnSINE1|SINE|5S-Deu-L2 1816 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 510-216 chr5 2588956 2589145 + 3 NA Intergenic Intergenic -123541 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 472-297 chr7 33536838 33536997 + 3 NA intron (NM_001362679, intron 21 of 21) intron (NM_001362679, intron 21 of 21) -367998 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 486-225 chr4 71591518 71591849 + 3 NA Intergenic L2a|LINE|L2 192396 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 643-42 chr16 47908987 47909384 + 3 NA TTS (NR_110650) TTS (NR_110650) -22055 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LINC02192 - long intergenic non-protein coding RNA 2192 ncRNA 404-294 chr7 81289097 81289359 + 3 NA Intergenic Intergenic 272591 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 357-367 chr5 153831597 153831765 + 3 NA Intergenic Intergenic 67306 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 569-54 chr13 64690825 64691149 + 3 NA Intergenic Intergenic -614976 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 457-273 chr9 81426598 81426870 + 3 NA Intergenic Intergenic 262801 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 396-21 chr1 115237144 115237395 + 3 NA Intergenic Intergenic -45765 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 402-207 chr3 35156107 35156312 + 3 NA intron (NR_110817, intron 2 of 3) L1PREC2|LINE|L1 237814 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 903-6 chr11 74589532 74590090 + 3 NA Intergenic AluSp|SINE|Alu -2771 NR_046409 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 384-268 chr4 83584168 83584410 + 3 NA intron (NM_001256421, intron 4 of 12) U2|snRNA|snRNA 48181 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 506-252 chr6 61029551 61029864 + 3 NA Intergenic SATR1|Satellite|Satellite -544423 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 808-30 chr2 186835165 186835608 + 3 NA intron (NM_182521, intron 5 of 8) intron (NM_182521, intron 5 of 8) 13784 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 390-363 chr7 110169610 110169878 + 3 NA Intergenic Intergenic -209531 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 389-138 chr17 71824318 71824582 + 3 NA Intergenic Intergenic 201529 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 367-254 chr20 59899568 59899783 + 3 NA intron (NM_014258, intron 18 of 44) intron (NM_014258, intron 18 of 44) 33962 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 640-130 chr8 21705461 21705946 + 3 NA intron (NM_001495, intron 5 of 8) intron (NM_001495, intron 5 of 8) 83172 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 442-54 chr12 34578629 34578828 + 3 NA Intergenic ALR/Alpha|Satellite|centr 556232 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 419-98 chr14 71761437 71761675 + 3 NA Intergenic L1MEg2|LINE|L1 -170615 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 735-33 chr18 55933402 55933772 + 3 NA Intergenic Intergenic -13388 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 287-61 chr10 76702708 76702870 + 3 NA Intergenic L1M1|LINE|L1 -185255 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 925-4 chr10 67324760 67325233 + 3 NA intron (NM_001127384, intron 5 of 17) L1PA13|LINE|L1 78414 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 903-16 chr17 13866781 13867361 + 3 NA Intergenic L1ME4a|LINE|L1 -157427 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 478-265 chr7 40737137 40737415 + 3 NA intron (NM_024728, intron 13 of 14) MER119|DNA|hAT-Charlie 242663 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 323-588 chr9 106145704 106145925 + 3 NA Intergenic Intergenic 451273 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 377-417 chr8 133636883 133637164 + 3 NA Intergenic L2a|LINE|L2 47043 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 909-8 chr14 44711012 44711516 + 3 NA Intergenic AluSz|SINE|Alu 87862 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 572-27 chr11 80102255 80102616 + 3 NA Intergenic MIRb|SINE|MIR 660368 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 746-89 chr9 31384256 31384651 + 3 NA Intergenic Intergenic -2963 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 346-145 chr14 84827748 84827879 + 3 NA Intergenic Intergenic -444119 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 410-117 chr19 29117935 29118181 + 3 NA Intergenic Intergenic 95093 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 497-46 chr11 97794931 97795143 + 3 NA Intergenic Intergenic -1225912 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 557-128 chr3 13763192 13763527 + 3 NA Intergenic Intergenic 112638 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 513-265 chr7 54950564 54950744 + 3 NA Intergenic HERVL-int|LTR|ERVL -68363 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 583-148 chr6 129016896 129017155 + 3 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 133884 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 287-264 chr3 145982930 145983046 + 3 NA Intergenic Intergenic 86197 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 459-55 chr11 115021814 115022115 + 3 NA Intergenic L1MB3|LINE|L1 -311613 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 454-95 chr14 80071141 80071389 + 3 NA Intergenic L1M4a2|LINE|L1 -140154 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 357-374 chr6 11247059 11247209 + 3 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) -14452 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 530-60 chr12 76642434 76642648 + 3 NA Intergenic HAL1|LINE|L1 -82770 NM_001319653 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 216-230 chr3 97177701 97177790 + 3 NA intron (NM_001080448, intron 3 of 17) L1MA1|LINE|L1 -261862 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 860-18 chr16 73432567 73433151 + 3 NA Intergenic Intergenic 46054 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 398-247 chr4 125937239 125937499 + 3 NA Intergenic Intergenic 430110 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 593-149 chr8 80129127 80129364 + 3 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 41876 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 613-79 chr3 42353467 42353779 + 3 NA Intergenic LTR84b|LTR|ERVL 56987 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 402-88 chr14 78439153 78439390 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 35552 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 344-439 chr6 146730033 146730276 + 3 NA intron (NM_024694, intron 20 of 35) intron (NM_024694, intron 20 of 35) 73670 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 541-36 chr11 102579454 102579653 + 3 NA intron (NM_004771, intron 8 of 9) AluJb|SINE|Alu 45779 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 513-174 chr3 25376172 25376486 + 3 NA intron (NM_001290300, intron 1 of 7) intron (NM_001290300, intron 1 of 7) 8598 NR_134933 105376997 Hs.536687 NR_134933 RARB-AS1 - RARB antisense RNA 1 ncRNA 621-25 chr12 24492911 24493216 + 3 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 69428 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 556 chr1 35125672 35125903 + 3 NA Intergenic AluSc8|SINE|Alu 46402 NM_024772 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 356-60 chr10 85088086 85088259 + 3 NA Intergenic MLT2A1|LTR|ERVL 110733 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 467-35 chr10 113361920 113362185 + 3 NA Intergenic Intergenic -188779 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 578-151 chr6 71396270 71396531 + 3 NA Intergenic Intergenic 7221 NR_029504 407029 NR_029504 ENSG00000207827 MIR30A MIRN30A|mir-30a microRNA 30a ncRNA 702-25 chr15 62233382 62233731 + 3 NA Intergenic Intergenic 15239 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 538-97 chr19 16813926 16814154 + 3 NA intron (NM_001347994, intron 18 of 18) AluJr|SINE|Alu -15358 NM_015260 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 486-292 chr8 82487772 82488095 + 3 NA Intergenic Intergenic -424171 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 487-165 chr20 23210708 23210989 + 3 NA Intergenic Intergenic -78212 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 666-65 chr2 180336224 180336547 + 3 NA Intergenic Intergenic -329088 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 521-259 chr8 128421977 128422221 + 3 NA intron (NR_121672, intron 4 of 7) intron (NR_121672, intron 4 of 7) 142580 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 308-382 chr5 61192677 61192874 + 3 NA intron (NR_109908, intron 3 of 3) L1MEg|LINE|L1 -30307 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 656-20 chr10 45153106 45153528 + 3 NA intron (NR_024472, intron 2 of 8) intron (NR_024472, intron 2 of 8) 1279 NR_024472 100133308 Hs.434365 NR_024472 RSU1P2 - Ras suppressor protein 1 pseudogene 2 pseudo 494-215 chr4 177734416 177734591 + 3 NA intron (NR_028342, intron 2 of 5) L1MB2|LINE|L1 5746 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 422-97 chr15 68094972 68095157 + 3 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 40488 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 691-80 chr7 14896422 14896675 + 3 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) 6203 NM_001350723 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 555-20 chr10 69527104 69527337 + 3 NA Intergenic MER30|DNA|hAT-Charlie 46202 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 465-267 chr7 12767559 12767798 + 3 NA Intergenic Charlie19a|DNA|hAT-Charlie 80045 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 657-93 chr7 154732289 154732675 + 3 NA intron (NR_157196, intron 8 of 25) intron (NR_157196, intron 8 of 25) -196035 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 428-26 chr10 68221159 68221348 + 3 NA Intergenic Intergenic 10860 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 643-124 chr8 60942296 60942646 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 25277 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 509-64 chr12 130661748 130661996 + 3 NA intron (NM_001351226, intron 1 of 21) intron (NM_001351226, intron 1 of 21) -27952 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 655-85 chr4 43334735 43335148 + 3 NA Intergenic LTR79|LTR|ERVL 157602 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 702-28 chr15 87692080 87692445 + 3 NA Intergenic L1MB7|LINE|L1 115333 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 215-343 chr9 105903546 105903667 + 3 NA Intergenic L2a|LINE|L2 209065 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 580-89 chr2 146289422 146289701 + 3 NA Intergenic MER4B|LTR|ERV1 -297496 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 464-205 chr5 111300245 111300503 + 3 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 75990 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 473-214 chr5 44923582 44923858 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 114773 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 997-13 chr2 114167819 114168481 + 3 NA Intergenic Intergenic -188166 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 273-361 chr5 91123816 91123932 + 3 NA intron (NR_003149, intron 87 of 89) L2a|LINE|L2 190528 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 587-165 chr8 111642393 111642784 + 3 NA Intergenic Intergenic 265949 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 1242-15 chr8 129224833 129225360 + 3 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 16144 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 283-330 chr4 85465529 85465723 + 3 NA Intergenic Intergenic -9524 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 1401-6 chr5 105495791 105496504 + 3 NA Intergenic L1MB2|LINE|L1 396673 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 352-364 chr4 61836095 61836223 + 3 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 325606 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 461-144 chr2 150151355 150151579 + 3 NA Intergenic L1MC3|LINE|L1 105540 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 426-167 chr21 24821653 24821824 + 3 NA Intergenic Intergenic -18812 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 472-33 chr10 53202121 53202371 + 3 NA Intergenic L1MB1|LINE|L1 -430546 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 376-253 chr3 97183220 97183406 + 3 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -256294 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 195-248 chr9 9945312 9945420 + 3 NA intron (NM_002839, intron 4 of 45) L2a|LINE|L2 145974 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 432-108 chr18 53872728 53872938 + 3 NA Intergenic L1PA13|LINE|L1 -291774 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 551-213 chr8 84275920 84276222 + 3 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 91405 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 545-25 chr10 64106503 64106754 + 3 NA Intergenic MIRb|SINE|MIR -584738 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 602-41 chr16 46395044 46395300 + 3 NA Intergenic Intergenic 173925 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 506-213 chr4 136064154 136064355 + 3 NA Intergenic Intergenic -150574 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 376-28 chr1 226254974 226255118 + 3 NA intron (NM_001366239, intron 9 of 13) L1MCa|LINE|L1 31382 NM_031944 83881 Hs.282079 NM_031944 ENSG00000185155 MIXL1 MILD1|MIX|MIXL Mix paired-like homeobox protein-coding 488-222 chr5 109879523 109879706 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -3568 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 343-111 chr12 103208519 103208712 + 3 NA Intergenic Intergenic 56773 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 667-130 chr9 113557055 113557400 + 3 NA intron (NM_001276261, intron 10 of 14) MLT1K|LTR|ERVL-MaLR -7727 NM_134427 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 407-327 chr8 122436978 122437192 + 3 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 131559 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 329-193 chr15 81242904 81243091 + 3 NA intron (NM_001352686, intron 2 of 18) L1MD1|LINE|L1 43521 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 590-170 chr8 122016751 122017111 + 3 NA Intergenic Intergenic -375491 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 387-37 chr10 52993484 52993659 + 3 NA Intergenic Intergenic -221871 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 741-33 chr2 156968450 156968946 + 3 NA Intergenic Intergenic -289007 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 491-101 chr18 42830864 42831124 + 3 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 284691 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 214-300 chr7 49432617 49432745 + 3 NA Intergenic Intergenic -340957 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 640-76 chr21 36658254 36658559 + 3 NA Intergenic Intergenic -40709 NM_005069 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 SIM bHLH transcription factor 2 protein-coding 372-335 chr3 121276203 121276413 + 3 NA intron (NM_001348343, intron 18 of 27) L1MEc|LINE|L1 226668 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 424-178 chr3 101894525 101894768 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X 45132 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 609-124 chr7 19518278 19518606 + 3 NA Intergenic Intergenic 186994 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 664-61 chr2 186504500 186504804 + 3 NA intron (NM_018471, intron 6 of 9) intron (NM_018471, intron 6 of 9) 18392 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 362-218 chr2 84708547 84708763 + 3 NA intron (NM_001370, intron 54 of 76) A-rich|Low_complexity|Low_complexity 172429 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 675-63 chr4 32217760 32218062 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -133127 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 670-80 chr3 118273482 118273805 + 3 NA Intergenic MIR|SINE|MIR -368125 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 540-198 chr7 68187477 68187666 + 3 NA Intergenic Intergenic 167318 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 591-93 chr21 43846673 43846950 + 3 NA Intergenic Intergenic -18412 NM_001369878 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 426-310 chr9 79116627 79116866 + 3 NA Intergenic Intergenic 28920 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 453-16 chr1 198974083 198974281 + 3 NA Intergenic Intergenic -36753 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 574-13 chr10 58406940 58407207 + 3 NA Intergenic Intergenic 21663 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 471-27 chr10 57565032 57565328 + 3 NA Intergenic L1MA5|LINE|L1 -260621 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 265-119 chr15 57066784 57066913 + 3 NA intron (NM_207038, intron 4 of 19) intron (NM_207038, intron 4 of 19) 147403 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 529-220 chr8 120099238 120099529 + 3 NA Intergenic L1PA15|LINE|L1 -25719 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 739-35 chr2 50388769 50389285 + 3 NA intron (NM_001330093, intron 17 of 22) AluJb|SINE|Alu -41271 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 586-120 chr5 45489104 45489373 + 3 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 207142 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 523-31 chr10 53230669 53230862 + 3 NA Intergenic L1M5|LINE|L1 -459065 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 966-13 chr2 40746146 40746734 + 3 NA Intergenic MER51A|LTR|ERV1 -234005 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 572-41 chr12 46615615 46615931 + 3 NA intron (NR_125377, intron 3 of 3) MLT1F1|LTR|ERVL-MaLR 210224 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 349-8 chr1 37163479 37163717 + 3 NA Intergenic L1MB7|LINE|L1 2035 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 688-41 chr14 49042018 49042371 + 3 NA Intergenic MIRb|SINE|MIR 544186 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 313-208 chr18 3540685 3540811 + 3 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -53366 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 846-56 chr8 49018181 49018682 + 3 NA Intergenic L1PA8A|LINE|L1 -35905 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 353-366 chr4 38515424 38515610 + 3 NA intron (NR_149076, intron 1 of 2) Tigger6a|DNA|TcMar-Tigger 5750 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 551-82 chr2 12291291 12291629 + 3 NA intron (NR_110196, intron 3 of 5) L2|LINE|L2 92330 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 459-163 chr20 46867966 46868187 + 3 NA Intergenic L1ME1|LINE|L1 -26548 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 514-49 chr11 81057132 81057512 + 3 NA Intergenic Intergenic -294519 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 599-70 chr20 18955931 18956424 + 3 NA Intergenic Intergenic -125974 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 394-271 chr5 93889905 93890065 + 3 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) -148385 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 443-176 chr20 39524094 39524363 + 3 NA Intergenic Intergenic -299480 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 377-287 chr4 58808779 58808947 + 3 NA Intergenic Intergenic -175419 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 328-320 chr20 53030882 53031085 + 3 NA intron (NM_173485, intron 1 of 2) L1ME4a|LINE|L1 58625 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 464-110 chr2 22639700 22639876 + 3 NA Intergenic Intergenic 103309 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 167-113 chr9 29066536 29066606 + 3 NA intron (NM_001354574, intron 1 of 5) Tigger20a|DNA|TcMar-Tigger 145728 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 636-57 chr17 55674628 55674924 + 3 NA Intergenic Intergenic 48088 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 680-69 chr2 160788221 160788690 + 3 NA Intergenic L1ME2|LINE|L1 -294648 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 529-242 chrX 79101042 79101252 + 3 NA Intergenic MER66B|LTR|ERV1 -69825 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 428-198 chr3 168003315 168003522 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR 92506 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 402-145 chr2 53896451 53896643 + 3 NA intron (NM_014614, intron 32 of 46) intron (NM_014614, intron 32 of 46) -36514 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 569-49 chr12 89248778 89249060 + 3 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 103582 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 375-111 chr13 38797811 38797964 + 3 NA intron (NM_207361, intron 6 of 23) L1M2|LINE|L1 29704 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 811-19 chr16 72676787 72677263 + 3 NA Intergenic L1MB4|LINE|L1 -12055 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 355-262 chr2 178704729 178704943 + 3 NA intron (NM_001256850, intron 102 of 312) intron (NM_001256850, intron 102 of 312) -72090 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 452-300 chrX 123417642 123417864 + 3 NA exon (NM_000828, exon 11 of 16) exon (NM_000828, exon 11 of 16) 233475 NM_001256743 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 570-216 chrX 96296918 96297112 + 3 NA Intergenic L1PA16|LINE|L1 40887 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 361-454 chr8 109184981 109185217 + 3 NA Intergenic Intergenic 98471 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 745-77 chr8 128320519 128321001 + 3 NA Intergenic Intergenic 170644 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 636-97 chr3 109852239 109852604 + 3 NA Intergenic L1M1|LINE|L1 249593 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 377-387 chr8 18339715 18339912 + 3 NA Intergenic L1MB1|LINE|L1 -51469 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 637-11 chr1 185544879 185545327 + 3 NA Intergenic Intergenic 83385 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 459-132 chr2 38424962 38425200 + 3 NA Intergenic Intergenic -6213 NR_146454 100996902 Hs.128280 NR_146454 ENSG00000235009 LINC01883 - long intergenic non-protein coding RNA 1883 ncRNA 1040-5 chr14 82074392 82074902 + 3 NA Intergenic Intergenic -331509 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 299-344 chr4 167696960 167697120 + 3 NA Intergenic Intergenic -395497 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 369-18 chr1 180234448 180234636 + 3 NA intron (NM_033343, intron 1 of 5) CpG-2007 4278 NM_033343 89884 Hs.658487 NM_033343 ENSG00000121454 LHX4 CPHD4 LIM homeobox 4 protein-coding 402-129 chr19 9341494 9341663 + 3 NA intron (NM_001202407, intron 5 of 5) intron (NM_001202407, intron 5 of 5) 16883 NM_001202425 100529215 Hs.728944 NM_001172650 ENSG00000270011 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 1099-19 chr4 30444888 30445462 + 3 NA Intergenic Intergenic -275194 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 888-14 chr16 79270400 79270851 + 3 NA Intergenic Intergenic 330112 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 483-202 chr5 20245678 20245862 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -59781 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 814-36 chr2 125891192 125891694 + 3 NA Intergenic MLT2A1|LTR|ERVL 226542 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 467-174 chr3 21601534 21601756 + 3 NA intron (NM_024697, intron 2 of 7) intron (NM_024697, intron 2 of 7) 58856 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 592-134 chr5 3856152 3856471 + 3 NA Intergenic Intergenic 260479 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 409-319 chrX 75231333 75231558 + 3 NA intron (NM_001363821, intron 4 of 9) L1PB1|LINE|L1 -42614 NM_001307944 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 609-34 chr15 57800740 57801089 + 3 NA Intergenic L1MA9|LINE|L1 94200 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 553-239 chr8 123833906 123834126 + 3 NA Intergenic AluSz6|SINE|Alu -17971 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 510-102 chr17 13668376 13668619 + 3 NA Intergenic L1M2|LINE|L1 -66568 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 512-12 chr1 182550051 182550252 + 3 NA intron (NM_001366934, intron 18 of 22) MIRc|SINE|MIR 39105 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 289-509 chrX 137498208 137498385 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -67831 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 484-202 chr5 5513144 5513360 + 3 NA Intergenic AluSx|SINE|Alu 90575 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 664-15 chr1 209304611 209304997 + 3 NA Intergenic Intergenic -20652 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 531-106 chr2 41806464 41806731 + 3 NA Intergenic L1MC4|LINE|L1 -70958 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 717-16 chr10 81998584 81999113 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 121161 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 478-172 chr21 45686617 45686816 + 3 NA intron (NM_001348238, intron 2 of 16) L1ME2|LINE|L1 17842 NR_145492 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 247-111 chr14 29253269 29253431 + 3 NA Intergenic L1MC1|LINE|L1 -467563 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 595-72 chr18 31779476 31779885 + 3 NA Intergenic Intergenic -18800 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 554-2 chr1 18417474 18417817 + 3 NA Intergenic MER34C_|LTR|ERV1 -63285 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 449-200 chr4 187934784 187935038 + 3 NA Intergenic Intergenic -60860 NM_174900 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 360-52 chr10 92346024 92346173 + 3 NA intron (NM_017824, intron 3 of 5) intron (NM_017824, intron 3 of 5) 54931 NM_017824 54708 Hs.573490 NM_017824 ENSG00000198060 MARCH5 MARCH-V|MITOL|RNF153 membrane associated ring-CH-type finger 5 protein-coding 552-13 chr1 223657464 223657719 + 3 NA intron (NM_001143962, intron 1 of 20) AluSz6|SINE|Alu 8110 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 448-253 chr7 24955136 24955337 + 3 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 24942 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 447-242 chr7 709916 710100 + 3 NA intron (NM_001164760, intron 2 of 10) intron (NM_001164760, intron 2 of 10) 2516 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 511-156 chr21 22408862 22409189 + 3 NA Intergenic Intergenic 310408 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 425-322 chr8 141659687 141659934 + 3 NA Intergenic Intergenic 126503 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 783-27 chr14 87867491 87867916 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 125479 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 676-115 chr8 136475881 136476242 + 3 NA Intergenic Intergenic -54737 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 770-33 chr2 25189536 25189866 + 3 NA Intergenic Intergenic -14612 NR_132378 106144568 Hs.580474 NR_132378 ENSG00000230452 LINC01381 DADOT long intergenic non-protein coding RNA 1381 ncRNA 381-220 chr2 237815651 237815811 + 3 NA intron (NM_001080504, intron 2 of 15) MER112|DNA|hAT-Charlie 16986 NM_001080504 375316 Hs.607265 NM_198852 ENSG00000177483 RBM44 - RNA binding motif protein 44 protein-coding 360-276 chr21 18766098 18766295 + 3 NA Intergenic Intergenic -6384 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 706-22 chr13 111667520 111667813 + 3 NA Intergenic Intergenic 71657 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 605-82 chr3 189054540 189054804 + 3 NA Intergenic AluJr4|SINE|Alu -107033 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 901-31 chr6 63099321 63099995 + 3 NA Intergenic AluSx|SINE|Alu 220319 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 498-65 chr12 38929843 38930114 + 3 NA Intergenic L1MC5|LINE|L1 -24387 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 642-73 chr3 89476136 89476523 + 3 NA intron (NM_005233, intron 16 of 16) intron (NM_005233, intron 16 of 16) 368708 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 575-47 chr13 98934842 98935154 + 3 NA intron (NM_001366682, intron 2 of 53) L2b|LINE|L2 43066 NM_001130048 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 749 chr1 41923590 41924149 + 3 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -4947 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 330-399 chr4 188727737 188727944 + 3 NA Intergenic Intergenic -48817 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 742-72 chr7 16114844 16115342 + 3 NA intron (NM_001101426, intron 9 of 9) L1MC4a|LINE|L1 -95393 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 657-110 chrX 57489438 57489797 + 3 NA TTS (NM_174912) TTS (NM_174912) -102219 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 660-100 chr7 65317699 65318094 + 3 NA Intergenic L1MA9|LINE|L1 -55903 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 578-52 chr13 92768252 92768729 + 3 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -46876 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 606-137 chr5 148053445 148053805 + 3 NA Intergenic L2a|LINE|L2 -10347 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 291-41 chr10 25230384 25230566 + 3 NA intron (NM_020752, intron 2 of 10) Plat_L3|LINE|CR1 -54199 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 651-33 chr13 44029440 44029734 + 3 NA non-coding (NR_026955, exon 3 of 3) non-coding (NR_026955, exon 3 of 3) 7252 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 1001-14 chr4 31434017 31434432 + 3 NA Intergenic L1MCa|LINE|L1 -72320 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 806-52 chr8 141759497 141759862 + 3 NA Intergenic Intergenic 26634 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 705-35 chr15 80303129 80303389 + 3 NA intron (NR_033833, intron 1 of 2) L1M1|LINE|L1 38546 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 954-8 chr12 25046086 25046611 + 3 NA intron (NM_001321724, intron 17 of 17) L1M3d|LINE|L1 -5880 NM_001366542 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 745-7 chr10 99049471 99049917 + 3 NA intron (NM_021828, intron 3 of 11) L1M4a2|LINE|L1 -125126 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 520-166 chr20 37657861 37658094 + 3 NA Intergenic L1ME3|LINE|L1 -18933 NR_040021 100287792 Hs.517026 NM_001001690 ENSG00000204117 LOC100287792 - uncharacterized LOC100287792 ncRNA 496-246 chr6 162362663 162362870 + 3 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -364366 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 798-64 chr8 82064906 82065372 + 3 NA Intergenic AluSc5|SINE|Alu -222853 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 378-139 chr14 64927040 64927245 + 3 NA intron (NM_001202559, intron 3 of 13) intron (NM_001202559, intron 3 of 13) 12687 NM_001202558 100529261 Hs.325531 NM_001202558 ENSG00000125954 CHURC1-FNTB FNTB|FTase-beta CHURC1-FNTB readthrough protein-coding 342-384 chr5 21600483 21600660 + 3 NA Intergenic Intergenic 141091 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 804-19 chr14 62431867 62432222 + 3 NA Intergenic Intergenic -292071 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 515-121 chr2 102150925 102151231 + 3 NA intron (NM_000877, intron 1 of 11) intron (NM_000877, intron 1 of 11) -2863 NM_001320983 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 489-266 chr9 19889244 19889458 + 3 NA Intergenic Intergenic -102332 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 248-206 chr2 164798203 164798370 + 3 NA intron (NM_001365670, intron 2 of 13) intron (NM_001365670, intron 2 of 13) -42463 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 332-396 chr4 175486744 175486981 + 3 NA Intergenic Intergenic 300814 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 490-126 chr19 29374155 29374466 + 3 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) 151442 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 460-177 chr20 51252787 51253031 + 3 NA Intergenic Penelope1_Vert|LINE|Penelope 200068 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 436-250 chr5 141267151 141267333 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 21847 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 543-207 chr5 156404252 156404543 + 3 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 77233 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 598-5 chr1 60705745 60705978 + 3 NA intron (NR_110628, intron 4 of 5) L1M3|LINE|L1 -83176 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 491-255 chr8 79863270 79863494 + 3 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 8355 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 609-99 chr5 53154929 53155288 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 45266 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 761-26 chr2 151268074 151268460 + 3 NA Intergenic AluJr4|SINE|Alu -6404 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 620-112 chr5 108072992 108073328 + 3 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 308938 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 656-73 chr21 27574802 27575061 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -147448 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 576-52 chr14 76820585 76820958 + 3 NA Intergenic L1MC4|LINE|L1 -5637 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 718-40 chr2 60836765 60837051 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 44406 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 298-26 chr1 217345357 217345494 + 3 NA Intergenic MIRb|SINE|MIR -207723 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 310-325 chr3 60205395 60205530 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -124553 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 471-193 chr4 62276695 62277019 + 3 NA Intergenic Intergenic -115092 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 342-108 chr12 25698996 25699154 + 3 NA Intergenic Intergenic -50497 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 492-93 chr14 78795392 78795681 + 3 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 391817 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 319-192 chr17 62900549 62900737 + 3 NA Intergenic L2a|LINE|L2 -43572 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 924-19 chr18 12792865 12793423 + 3 NA 3' UTR (NM_001308287, exon 8 of 8) 3' UTR (NM_001308287, exon 8 of 8) -43722 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 504-160 chr22 27069471 27069682 + 3 NA Intergenic Intergenic -9058 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 565-161 chr6 98306551 98306840 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 282164 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 366-9 chr1 73333059 73333214 + 3 NA intron (NR_110676, intron 3 of 3) L1M4b|LINE|L1 26966 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 888-16 chr17 70524106 70524694 + 3 NA Intergenic Intergenic 354865 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 963-2 chr1 210898058 210898563 + 3 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 235064 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 1016-25 chr8 137795601 137796292 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR 287599 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 595-36 chr11 115004666 115005089 + 3 NA Intergenic L1MA9|LINE|L1 326350 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 552-184 chr6 10050228 10050441 + 3 NA Intergenic L1MB3|LINE|L1 -354168 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 487-129 chr2 3181879 3182183 + 3 NA Intergenic Intergenic -56005 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 490-11 chr1 79736306 79736582 + 3 NA Intergenic Intergenic -729714 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 617-142 chrX 87309643 87310166 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -207898 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 364-24 chr1 157807946 157808264 + 3 NA intron (NM_001159397, intron 1 of 9) intron (NM_001159397, intron 1 of 9) 12015 NM_052938 115350 Hs.656112 NM_052938 ENSG00000163534 FCRL1 CD307a|FCRH1|IFGP1|IRTA5 Fc receptor like 1 protein-coding 538-232 chr8 87163880 87164274 + 3 NA intron (NM_173538, intron 4 of 10) L1M3|LINE|L1 297662 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 272-268 chr3 67533674 67533831 + 3 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 120862 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 458-4 chr1 164292339 164292638 + 3 NA Intergenic L1M5|LINE|L1 -266872 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 456-227 chr4 84063835 84064136 + 3 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 235184 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 492-242 chr7 53275529 53275812 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 240037 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 834-20 chr2 42641829 42642296 + 3 NA intron (NM_001330443, intron 5 of 16) intron (NM_001330443, intron 5 of 16) 73430 NM_001330444 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 495-40 chr12 9926657 9926903 + 3 NA intron (NM_207375, intron 1 of 4) intron (NM_207375, intron 1 of 4) 5590 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 405-173 chr2 235239452 235239689 + 3 NA Intergenic HAL1|LINE|L1 211835 NM_001371306 529-31 chr11 40335494 40335810 + 3 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -42522 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 488-148 chr2 152365334 152365521 + 3 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 30253 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 670-99 chr5 113885830 113886116 + 3 NA Intergenic L1MEd|LINE|L1 372279 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 826-13 chr11 60238528 60238923 + 3 NA intron (NM_001351235, intron 1 of 5) L1M4|LINE|L1 4412 NM_001351235 643680 Hs.559934 NM_001351235 MS4A4E - membrane spanning 4-domains A4E protein-coding 433-192 chr4 31392805 31393055 + 3 NA Intergenic MIRc|SINE|MIR -113614 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 530-126 chr2 66616826 66617013 + 3 NA intron (NR_110156, intron 1 of 5) L1M4|LINE|L1 42889 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 277-445 chr9 71419742 71419940 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 27130 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 546-177 chr4 105188325 105188625 + 3 NA intron (NR_126420, intron 2 of 5) L1MB4|LINE|L1 41790 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 455-94 chr17 56002145 56002355 + 3 NA Intergenic Intergenic -151225 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 484-90 chr16 79059831 79060056 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 540794 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 527-83 chr14 45818343 45818706 + 3 NA Intergenic SATR1|Satellite|Satellite -102922 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 621-125 chr8 14061319 14061644 + 3 NA Intergenic L1PREC2|LINE|L1 431791 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 368-133 chr13 111552015 111552217 + 3 NA Intergenic Intergenic -43893 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 357-261 chr3 20417088 20417334 + 3 NA Intergenic Intergenic 74743 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 293-23 chr1 236916705 236916934 + 3 NA Intergenic L1MEc|LINE|L1 87622 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 706-47 chr3 94496085 94496454 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 433208 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 518-194 chr4 30827892 30828218 + 3 NA intron (NM_032457, intron 1 of 2) MIR|SINE|MIR 107686 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 372-528 chrX 87816293 87816472 + 3 NA Intergenic Intergenic 298580 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 570-81 chr16 73450868 73451125 + 3 NA Intergenic Intergenic 64191 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 938-15 chr2 100542917 100543432 + 3 NA Intergenic AluSx|SINE|Alu -19819 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 208-51 chr12 13019500 13019613 + 3 NA intron (NR_149067, intron 2 of 2) L1M7|LINE|L1 19114 NR_002774 93164 Hs.593282 NR_002774 ENSG00000183935 HTR7P1 HTR7P 5-hydroxytryptamine receptor 7 pseudogene 1 pseudo 530-166 chr3 82199173 82199537 + 3 NA intron (NR_147146, intron 2 of 8) intron (NR_147146, intron 2 of 8) 213213 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 481-179 chr20 49324882 49325158 + 3 NA Intergenic L2a|LINE|L2 44337 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 505-300 chr8 38636676 38636982 + 3 NA Intergenic L1PA17|LINE|L1 -35572 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 424-100 chr17 59572198 59572408 + 3 NA intron (NM_024612, intron 3 of 17) intron (NM_024612, intron 3 of 17) 6693 NM_001166301 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 370-394 chr6 61318060 61318271 + 3 NA Intergenic ALR/Alpha|Satellite|centr -255965 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 540-169 chr5 8779670 8779999 + 3 NA Intergenic Intergenic -59898 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 458-274 chr9 115337231 115337583 + 3 NA intron (NR_163556, intron 4 of 7) intron (NR_163556, intron 4 of 7) 195589 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 515-132 chr2 185504331 185504601 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner 234253 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 404-90 chr13 64731419 64731597 + 3 NA Intergenic L1PA8|LINE|L1 -655497 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 473-16 chr1 163780077 163780371 + 3 NA Intergenic L1MEc|LINE|L1 -357033 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 713-67 chr5 54095895 54096305 + 3 NA intron (NM_019087, intron 4 of 4) MIRb|SINE|MIR -144501 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 511-119 chr2 64886833 64887054 + 3 NA Intergenic Kanga1d|DNA|TcMar-Tc2 -23312 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 465-298 chr8 122386398 122386713 + 3 NA Intergenic Intergenic 182089 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 728-43 chr19 40011702 40012120 + 3 NA intron (NM_178544, intron 6 of 6) MLT1C|LTR|ERVL-MaLR 14851 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 789-41 chr7 25395023 25395492 + 3 NA Intergenic Intergenic -166771 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 461-95 chr16 24275318 24275516 + 3 NA intron (NM_006539, intron 1 of 3) Charlie1a|DNA|hAT-Charlie 19864 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 188-82 chr18 6191036 6191148 + 3 NA intron (NM_001365769, intron 12 of 16) L2a|LINE|L2 -65652 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 459-242 chr5 107762083 107762310 + 3 NA Intergenic X6B_LINE|LINE|CR1 -91259 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 900-3 chr1 230541996 230542429 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 53371 NR_146479 101927553 Hs.680219 NR_146479 ENSG00000232964 LINC01737 - long intergenic non-protein coding RNA 1737 ncRNA 468-238 chr5 19680442 19680709 + 3 NA intron (NM_001349562, intron 5 of 13) L1PA15|LINE|L1 205697 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 432-125 chr2 65229913 65230084 + 3 NA intron (NM_001005386, intron 1 of 9) intron (NM_001005386, intron 1 of 9) 2303 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 468-274 chr5 180750721 180750939 + 3 NA Intergenic AluJo|SINE|Alu -10772 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 654-34 chr13 99715164 99715541 + 3 NA intron (NR_104592, intron 1 of 9) HAL1|LINE|L1 13649 NR_120384 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 264-92 chr12 43661451 43661579 + 3 NA Intergenic L1M5|LINE|L1 97275 NM_031292 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 457-134 chr2 238112310 238112467 + 3 NA intron (NM_194312, intron 4 of 8) L1MEg|LINE|L1 12048 NM_194312 339768 Hs.127724 NM_194312 ENSG00000144488 ESPNL - espin like protein-coding 163-71 chr20 6629147 6629241 + 3 NA Intergenic LTR33A_|LTR|ERVL 106942 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 441-191 chr5 11921935 11922204 + 3 NA Intergenic LTR40A1|LTR|ERVL -17623 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 569-30 chr10 102190523 102191015 + 3 NA Intergenic AluY|SINE|Alu -35530 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 499-136 chr2 192713125 192713293 + 3 NA Intergenic Intergenic -36636 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 596-27 chr10 57207705 57208081 + 3 NA Intergenic L1ME3G|LINE|L1 96666 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 643-66 chr21 24552062 24552497 + 3 NA Intergenic AluSx1|SINE|Alu 123539 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 425-43 chr10 108196640 108196829 + 3 NA Intergenic Intergenic -127441 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 843-37 chr6 40605066 40605759 + 3 NA Intergenic L2|LINE|L2 -18048 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 845-41 chr8 139589810 139590335 + 3 NA Intergenic Intergenic 113051 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 334-428 chr5 88298792 88298934 + 3 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) 29847 NR_039994 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 530-140 chr2 140160310 140160640 + 3 NA Intergenic L1PA11|LINE|L1 426210 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 520-172 chr21 20984461 20984792 + 3 NA Intergenic Intergenic -13783 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 373-257 chr3 24787696 24787865 + 3 NA Intergenic Intergenic -41543 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 546-197 chr5 153141801 153142156 + 3 NA Intergenic Intergenic -169629 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 546-29 chr10 123432865 123433146 + 3 NA Intergenic Intergenic -233350 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 298-306 chr3 121308661 121308795 + 3 NA intron (NM_001348343, intron 20 of 27) L1M4b|LINE|L1 237260 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 405-289 chr6 139768880 139769113 + 3 NA Intergenic HAL1|LINE|L1 -2077 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 519-136 chr20 52368903 52369178 + 3 NA Intergenic Intergenic -177055 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 237-364 chr7 110237938 110238038 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -277775 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 309-424 chr5 15255226 15255352 + 3 NA intron (NR_109944, intron 1 of 2) intron (NR_109944, intron 1 of 2) 11271 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 680-35 chr14 48785429 48785813 + 3 NA Intergenic Intergenic 800759 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 550-51 chr12 18422598 18422912 + 3 NA intron (NM_001288774, intron 17 of 32) intron (NM_001288774, intron 17 of 32) 161215 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 601-82 chr2 173428498 173428786 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 73770 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 428-299 chr8 83998991 83999182 + 3 NA Intergenic L1PA15-16|LINE|L1 -183701 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 265-282 chr4 117851986 117852124 + 3 NA intron (NR_147154, intron 1 of 1) L1MA4A|LINE|L1 17654 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 588-121 chr5 15445112 15445516 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -54866 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 334-369 chr3 185235679 185235928 + 3 NA intron (NM_001966, intron 2 of 6) intron (NM_001966, intron 2 of 6) 17469 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 1051-3 chr11 10011454 10012006 + 3 NA intron (NM_030962, intron 6 of 39) L1M4a1|LINE|L1 172588 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 540-218 chr8 130820206 130820399 + 3 NA intron (NM_001115, intron 13 of 17) intron (NM_001115, intron 13 of 17) 220607 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 844-17 chr14 87903810 87904273 + 3 NA Intergenic LTR104_Mam|LTR|Gypsy 89141 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 241-75 chr11 134625720 134625886 + 3 NA Intergenic Intergenic -110142 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 981-35 chr9 113052079 113052648 + 3 NA intron (NM_001282515, intron 1 of 3) intron (NM_001282515, intron 1 of 3) 4361 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 535-167 chr3 67694063 67694257 + 3 NA intron (NR_109992, intron 3 of 6) L2b|LINE|L2 39463 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 337-508 chr6 157795940 157796131 + 3 NA Intergenic Intergenic -27211 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 591-142 chr5 159743767 159744139 + 3 NA Intergenic L1ME1|LINE|L1 127431 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 697-31 chr15 88097538 88097969 + 3 NA intron (NM_001007156, intron 13 of 15) L1ME4c|LINE|L1 108221 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 306-353 chr4 54430929 54431122 + 3 NA Intergenic Intergenic 98133 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 409-27 chr10 56673540 56673804 + 3 NA Intergenic MIRc|SINE|MIR -312399 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 511-107 chr19 52947619 52947805 + 3 NA intron (NM_001202473, intron 3 of 3) AluY|SINE|Alu -5118 NR_037805 399669 Hs.745445 NM_203307 ENSG00000213801 ZNF321P ZNF321 zinc finger protein 321, pseudogene pseudo 1493-2 chr8 126987374 126988321 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -25307 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 936-24 chr3 190280774 190281152 + 3 NA Intergenic Intergenic 41483 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 617-91 chr3 128223126 128223491 + 3 NA intron (NM_021937, intron 1 of 6) MER21C|LTR|ERVL -69394 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 481-97 chr15 54257246 54257540 + 3 NA intron (NM_001329919, intron 7 of 31) intron (NM_001329919, intron 7 of 31) 244745 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 335-336 chr3 17173607 17173721 + 3 NA intron (NM_014744, intron 19 of 21) intron (NM_014744, intron 19 of 21) 240468 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 621-80 chr3 181838670 181838972 + 3 NA Intergenic Intergenic -113543 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 1269-11 chrX 75998545 75999212 + 3 NA Intergenic L1PA12|LINE|L1 -174051 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 798-11 chr12 34440711 34441113 + 3 NA Intergenic ALR/Alpha|Satellite|centr 418416 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 620-103 chr5 10795233 10795689 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -34227 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 492-6 chr1 77234029 77234268 + 3 NA Intergenic L1MC1|LINE|L1 -14718 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 982-4 chr10 13550810 13551389 + 3 NA Intergenic L1M4a1|LINE|L1 -22085 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 450-212 chr3 174826124 174826344 + 3 NA Intergenic L2a|LINE|L2 -33100 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 618-35 chr14 28028789 28029153 + 3 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat -355750 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 376-195 chr2 126261728 126261863 + 3 NA Intergenic Intergenic -143810 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 435-106 chr17 71379089 71379387 + 3 NA Intergenic MIRc|SINE|MIR -177059 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 507-165 chr3 111480301 111480550 + 3 NA Intergenic Intergenic -61772 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 642 chr1 42251226 42251585 + 3 NA intron (NM_001198850, intron 4 of 12) L1ME2|LINE|L1 83550 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 176-94 chr4 18487217 18487285 + 3 NA Intergenic Intergenic -465376 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 518-168 chr22 33636125 33636377 + 3 NA intron (NM_133642, intron 3 of 14) intron (NM_133642, intron 3 of 14) 68669 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 408-11 chr1 74760115 74760368 + 3 NA intron (NM_138467, intron 5 of 5) Tigger2|DNA|TcMar-Tigger -26833 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 449-184 chr4 30710203 30710425 + 3 NA Intergenic L1M2|LINE|L1 -10055 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 884-19 chr2 80480638 80481090 + 3 NA intron (NM_001282599, intron 3 of 11) MIRc|SINE|MIR 167485 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 854-39 chr6 159846662 159847052 + 3 NA Intergenic FLAM_A|SINE|Alu -44131 NM_001366704 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 503-168 chr20 19551627 19551857 + 3 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -267146 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 404-246 chr4 188871374 188871604 + 3 NA Intergenic Intergenic 94832 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 355-172 chr15 70671488 70671757 + 3 NA intron (NM_018003, intron 14 of 18) intron (NM_018003, intron 14 of 18) 30660 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 801-65 chr9 25734552 25734961 + 3 NA Intergenic Intergenic -45300 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 507-8 chr1 74634294 74634483 + 3 NA intron (NM_001002912, intron 6 of 14) intron (NM_001002912, intron 6 of 14) 39404 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 900-16 chr19 6905743 6906430 + 3 NA intron (NM_001974, intron 8 of 20) L1ME3F|LINE|L1 18507 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 406-199 chr4 7553306 7553494 + 3 NA intron (NM_020777, intron 3 of 26) L1M6|LINE|L1 93372 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 362-137 chr13 94544620 94544829 + 3 NA intron (NM_001322186, intron 1 of 9) intron (NM_001322186, intron 1 of 9) 4682 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 498-163 chr3 13917549 13917927 + 3 NA Intergenic L1PA16|LINE|L1 -15318 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 510-106 chr17 66003290 66003500 + 3 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -176852 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 410-2 chr1 60897733 60898003 + 3 NA Intergenic L2c|LINE|L2 -72284 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 323-275 chr2 147219088 147219254 + 3 NA Intergenic MER41-int|LTR|ERV1 -625346 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 435-272 chrX 65212497 65212678 + 3 NA Intergenic (ATTATAT)n|Simple_repeat|Simple_repeat -177846 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 601-5 chr1 168216933 168217233 + 3 NA Intergenic Intergenic -8921 NM_199344 375035 Hs.645435 NM_199344 ENSG00000213064 SFT2D2 UNQ512|dJ747L4.C1.2 SFT2 domain containing 2 protein-coding 442-302 chr8 136461462 136461691 + 3 NA Intergenic L1MDa|LINE|L1 -69222 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 450-284 chr7 81587700 81587881 + 3 NA intron (NR_126026, intron 5 of 8) intron (NR_126026, intron 5 of 8) -25971 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 392-296 chr7 4426567 4426828 + 3 NA Intergenic Intergenic -255598 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 751-30 chr19 44100019 44100434 + 3 NA intron (NM_013398, intron 3 of 5) MIR|SINE|MIR 5865 NM_001321645 7767 Hs.585869 NM_013398 ENSG00000267680 ZNF224 BMZF-2|BMZF2|KOX22|ZNF233|ZNF255|ZNF27 zinc finger protein 224 protein-coding 695-8 chr1 232253308 232253756 + 3 NA Intergenic Intergenic 262076 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 455-100 chr17 72323409 72323595 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -19309 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 508-38 chr11 15444553 15444855 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -199181 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 591-141 chr5 150871767 150872078 + 3 NA intron (NM_001346557, intron 2 of 3) MER4-int|LTR|ERV1 25399 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 329-209 chr16 86100764 86100890 + 3 NA Intergenic Intergenic -95354 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 503-51 chr11 43360995 43361407 + 3 NA intron (NM_001307943, intron 1 of 19) intron (NM_001307943, intron 1 of 19) 2281 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 224-259 chr5 118351859 118351965 + 3 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 69338 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 405-115 chr18 7296074 7296329 + 3 NA Intergenic L1MB7|LINE|L1 65097 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 394-251 chr4 141547563 141547743 + 3 NA Intergenic L2|LINE|L2 -88930 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 618-112 chr6 153897206 153897657 + 3 NA Intergenic MIRc|SINE|MIR -113065 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 253-311 chr4 182575584 182575684 + 3 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 332232 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 847-10 chr11 109521267 109521695 + 3 NA Intergenic Intergenic 99291 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 728-62 chr3 119040608 119041026 + 3 NA intron (NM_152538, intron 3 of 8) L1M5|LINE|L1 -5971 NM_001353321 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 542-2 chr1 34059701 34059952 + 3 NA intron (NM_052896, intron 2 of 69) intron (NM_052896, intron 2 of 69) 105448 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 636-112 chr5 67283369 67283667 + 3 NA Intergenic Intergenic -86719 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 731-74 chr8 99974205 99974635 + 3 NA intron (NM_015668, intron 23 of 27) L1ME4a|LINE|L1 -30162 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 450-252 chr5 155180605 155180794 + 3 NA Intergenic L1MCc|LINE|L1 166944 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 537-51 chr12 16112627 16112836 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 164954 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 556-98 chr2 63780868 63781125 + 3 NA Intergenic Intergenic -59968 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 393-387 chr9 91689173 91689380 + 3 NA Intergenic Intergenic -52931 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 576-109 chr3 81061189 81061459 + 3 NA intron (NR_132411, intron 1 of 1) MER65A|LTR|ERV1 67456 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 487-185 chr3 52615935 52616197 + 3 NA intron (NM_001366074, intron 17 of 30) intron (NM_001366074, intron 17 of 30) 69533 NM_001350077 55193 Hs.189920 NM_018165 ENSG00000163939 PBRM1 BAF180|PB1 polybromo 1 protein-coding 544-128 chr2 175715209 175715419 + 3 NA Intergenic (CAAA)n|Simple_repeat|Simple_repeat 286953 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 540-110 chr2 65876585 65876797 + 3 NA Intergenic Intergenic -444092 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 572-105 chr20 59769520 59769812 + 3 NA intron (NM_080672, intron 5 of 12) L2b|LINE|L2 48456 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 352-476 chr6 162155343 162155584 + 3 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -571669 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 564-215 chrUn_KI270442v1 75032 75323 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 821-36 chr3 104881544 104882204 + 3 NA Intergenic (A)n|Simple_repeat|Simple_repeat -484839 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 360-301 chr3 73834451 73834628 + 3 NA intron (NR_146637, intron 2 of 3) L1ME3A|LINE|L1 25295 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 505-169 chr2 236207970 236208314 + 3 NA intron (NM_212556, intron 4 of 5) intron (NM_212556, intron 4 of 5) -39756 NM_001301687 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 606-98 chr20 55787930 55788267 + 3 NA Intergenic Intergenic 217421 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 448-138 chr20 55266613 55266933 + 3 NA Intergenic Intergenic -156270 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 638-19 chr10 71129391 71129662 + 3 NA Intergenic L1ME3G|LINE|L1 -83044 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 456-314 chr8 70579087 70579362 + 3 NA intron (NM_001317804, intron 11 of 11) Tigger3a|DNA|TcMar-Tigger 28445 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 597-42 chr12 125437837 125438148 + 3 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 111376 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 320-458 chr5 125778270 125778480 + 3 NA Intergenic Intergenic 285114 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 941-27 chr7 64107285 64107999 + 3 NA Intergenic Intergenic 62208 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 863-35 chr5 46041736 46042235 + 3 NA Intergenic ALR/Alpha|Satellite|centr -345605 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 598-125 chr6 154522563 154522867 + 3 NA Intergenic Intergenic -12030 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 428-144 chr2 187169119 187169330 + 3 NA Intergenic Intergenic 279028 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 771-2 chr1 179930444 179930922 + 3 NA Intergenic Intergenic -24127 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 486-84 chr14 70081736 70082044 + 3 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -1673 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 624-91 chr4 96175031 96175600 + 3 NA Intergenic Intergenic -135388 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 705-83 chr5 118301297 118301806 + 3 NA Intergenic MIRb|SINE|MIR 18977 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 551-230 chr9 26844375 26844703 + 3 NA intron (NM_001167575, intron 5 of 5) intron (NM_001167575, intron 5 of 5) 48263 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 658-86 chr4 13352076 13352556 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR 132024 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 794-51 chr8 142386247 142386758 + 3 NA intron (NM_001366903, intron 1 of 9) L1M7|LINE|L1 16680 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 518-79 chr14 47342497 47342794 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 601 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 601-112 chr4 94329769 94330097 + 3 NA intron (NM_014485, intron 2 of 5) L3|LINE|CR1 12903 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 679-38 chr16 69835207 69835605 + 3 NA intron (NM_001270455, intron 4 of 8) intron (NM_001270455, intron 4 of 8) -3331 NM_001270453 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 536-195 chr6 55464101 55464357 + 3 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 114985 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 546-246 chr8 125458428 125458834 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 26422 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 712-32 chr16 10140742 10141082 + 3 NA intron (NM_001134408, intron 2 of 13) AluJr|SINE|Alu 41155 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 733-46 chr22 43402360 43402791 + 3 NA intron (NR_146918, intron 2 of 3) MIRb|SINE|MIR 2244 NR_146918 105373054 NR_146918 ENSG00000236117 LINC01639 - long intergenic non-protein coding RNA 1639 ncRNA 342-30 chr1 118616296 118616432 + 3 NA Intergenic L1MA2|LINE|L1 371979 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 393-295 chr5 175144146 175144459 + 3 NA Intergenic L1MC3|LINE|L1 -148571 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 343-395 chr4 85704814 85705045 + 3 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -17539 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 624-3 chr1 82954291 82954680 + 3 NA intron (NR_147074, intron 2 of 10) intron (NR_147074, intron 2 of 10) 30437 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 826-41 chr3 1621333 1621850 + 3 NA Intergenic Intergenic -477212 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 619-140 chrX 73342719 73343144 + 3 NA Intergenic Intergenic -104323 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 415-184 chr3 96124507 96124716 + 3 NA Intergenic L1MA10|LINE|L1 -235353 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 271-109 chr12 110481156 110481313 + 3 NA intron (NM_013300, intron 2 of 6) L1MB3|LINE|L1 12389 NM_013300 29902 Hs.436618 NM_013300 ENSG00000204856 FAM216A C12orf24|HSU79274 family with sequence similarity 216 member A protein-coding 816-28 chr20 5302644 5303104 + 3 NA intron (NM_144773, intron 2 of 2) L1MC5a|LINE|L1 13858 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 459-29 chr10 51791158 51791337 + 3 NA intron (NM_001098512, intron 3 of 17) L2c|LINE|L2 -91652 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 251-67 chr12 55045014 55045122 + 3 NA Intergenic Intergenic 25094 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 845-26 chr5 6138305 6138784 + 3 NA Intergenic L1PB1|LINE|L1 198748 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 480-202 chr3 190365884 190366080 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -21890 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 477-269 chr8 43770237 43770546 + 3 NA Intergenic ALR/Alpha|Satellite|centr 477949 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 359-13 chr1 75422312 75422442 + 3 NA intron (NM_001320285, intron 2 of 25) L2b|LINE|L2 188737 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 750-30 chr2 6227980 6228331 + 3 NA Intergenic L1MC4|LINE|L1 147267 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 487-118 chr18 13248930 13249138 + 3 NA intron (NM_181482, intron 1 of 5) L1MA5A|LINE|L1 9491 NR_146617 147276 Hs.675872 NR_146617 ENSG00000279020 C18orf15 HsT3231 chromosome 18 open reading frame 15 (putative) ncRNA 597-90 chr3 68950864 68951188 + 3 NA Intergenic LTR33|LTR|ERVL -18416 NM_001005527 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 305-85 chr10 128451294 128451442 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 165418 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 332-202 chr17 69025091 69025264 + 3 NA intron (NM_080283, intron 16 of 38) intron (NM_080283, intron 16 of 38) 20463 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 1102-11 chr3 134133607 134134048 + 3 NA Intergenic Intergenic -76179 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 586-130 chr6 38672613 38673002 + 3 NA Intergenic Intergenic 30338 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 383-339 chr6 64341827 64341996 + 3 NA intron (NM_001292009, intron 29 of 43) L1PA4|LINE|L1 535075 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 638-138 chr6 117434533 117434815 + 3 NA Intergenic L1MA5A|LINE|L1 -8819 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 492-77 chr13 90189301 90189542 + 3 NA Intergenic Intergenic -41761 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 402-27 chr10 11726512 11726722 + 3 NA Intergenic L2a|LINE|L2 -15765 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 620-49 chr17 72625058 72625403 + 3 NA intron (NR_033876, intron 2 of 4) THE1B|LTR|ERVL-MaLR 15242 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 513-19 chr10 1445972 1446255 + 3 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -80517 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168 ADARB2 antisense RNA 1 ncRNA 322-4 chr1 44823336 44823483 + 3 NA intron (NM_003738, intron 19 of 21) intron (NM_003738, intron 19 of 21) 14927 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB domain containing 19 protein-coding 699-70 chr3 38703035 38703407 + 3 NA intron (NM_006514, intron 25 of 26) intron (NM_006514, intron 25 of 26) -53534 NM_001160160 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 535-19 chr1 199837279 199837552 + 3 NA Intergenic L1PA13|LINE|L1 -190295 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 350-440 chr6 62712869 62713023 + 3 NA Intergenic L1ME1|LINE|L1 -426719 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 457-35 chr10 132685081 132685387 + 3 NA intron (NM_001321042, intron 1 of 12) intron (NM_001321042, intron 1 of 12) 3959 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 741-18 chr14 49266208 49266609 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 319972 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 660-93 chr6 74363161 74363588 + 3 NA intron (NR_110856, intron 2 of 3) MIR|SINE|MIR 293923 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 572-65 chr16 8473677 8474037 + 3 NA Intergenic L1ME2z|LINE|L1 115981 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1013-7 chr2 82263755 82264316 + 3 NA Intergenic Intergenic -592768 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 402-212 chr3 96735136 96735397 + 3 NA Intergenic Intergenic -79328 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 1011-17 chr7 33558555 33559075 + 3 NA intron (NM_001362679, intron 21 of 21) intron (NM_001362679, intron 21 of 21) -346100 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 847-36 chr5 7470214 7470820 + 3 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 74379 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 640-72 chr20 42414757 42415279 + 3 NA intron (NM_133170, intron 9 of 31) L1MD|LINE|L1 -270465 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 719-79 chr8 76817918 76818347 + 3 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -134857 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 217-301 chr5 91949987 91950106 + 3 NA Intergenic Intergenic -566729 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 479-178 chr4 188663330 188663642 + 3 NA Intergenic LTR47B2|LTR|ERVL -113171 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 597-97 chr4 44860608 44860913 + 3 NA Intergenic Intergenic -134126 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 533-61 chr15 66964868 66965124 + 3 NA Intergenic Intergenic -8481 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 448-111 chr2 67862890 67863148 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -37457 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 555-160 chr5 63719943 63720285 + 3 NA Intergenic L1MC1|LINE|L1 242178 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 569-187 chr9 40928588 40928870 + 3 NA TTS (NR_031629) TTS (NR_031629) 363 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 965-13 chr20 28781884 28782427 + 3 NA Intergenic ALR/Alpha|Satellite|centr -179490 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 491-36 chr11 73558666 73558873 + 3 NA intron (NM_001286051, intron 1 of 5) L1MB5|LINE|L1 39343 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 1006-11 chr16 61042535 61042959 + 3 NA Intergenic LTR16E2|LTR|ERVL 13019 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 579-47 chr16 52570740 52571071 + 3 NA intron (NR_033920, intron 2 of 3) intron (NR_033920, intron 2 of 3) -23103 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 494-9 chr1 107218748 107218936 + 3 NA intron (NM_001113226, intron 1 of 6) L1PB1|LINE|L1 70773 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 545-156 chr4 35287488 35287753 + 3 NA Intergenic MIR|SINE|MIR 956319 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 522-240 chr7 109588428 109588655 + 3 NA Intergenic L1PA16|LINE|L1 371672 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 422-30 chr10 48881619 48881814 + 3 NA intron (NM_020945, intron 43 of 61) intron (NM_020945, intron 43 of 61) 32519 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 573-97 chr2 107104882 107105218 + 3 NA Intergenic L1MB4|LINE|L1 -217941 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 423-76 chr14 58961808 58962118 + 3 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 133675 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 276-34 chr1 197690951 197691063 + 3 NA intron (NR_125340, intron 3 of 19) L1MB1|LINE|L1 84473 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 373-308 chr5 12293238 12293435 + 3 NA Intergenic L1ME1|LINE|L1 -281521 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 337-514 chr7 35382448 35382698 + 3 NA Intergenic Intergenic 68718 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 592-137 chr5 15848122 15848487 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -86878 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 534-195 chr5 29824835 29825154 + 3 NA Intergenic L1M5|LINE|L1 -55566 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 472-49 chr11 115055803 115056133 + 3 NA Intergenic Intergenic -277609 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 449-292 chr9 77356426 77356667 + 3 NA intron (NM_001018038, intron 54 of 68) L2a|LINE|L2 -91103 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 552-41 chr12 13976810 13977104 + 3 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 3399 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 469-100 chr16 8501189 8501475 + 3 NA Intergenic MLT1G-int|LTR|ERVL-MaLR 88506 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 486-302 chr8 134966858 134967213 + 3 NA Intergenic Intergenic 117100 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 468-66 chr13 33688781 33689024 + 3 NA Intergenic LOR1b|LTR|ERV1 -12108 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 532-150 chr22 26250871 26251217 + 3 NA intron (NM_001184776, intron 1 of 14) L1MA5|LINE|L1 81570 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 203-32 chr10 95964636 95964774 + 3 NA intron (NM_001349008, intron 12 of 34) intron (NM_001349008, intron 12 of 34) -35386 NM_001159747 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 410-232 chr5 23556344 23556593 + 3 NA Intergenic Intergenic 48813 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 544-235 chr9 3826735 3826967 + 3 NA 3' UTR (NM_152629, exon 10 of 10) 3' UTR (NM_152629, exon 10 of 10) -71795 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 639-79 chr3 68739052 68739271 + 3 NA exon (NM_182522, exon 5 of 6) exon (NM_182522, exon 5 of 6) 193386 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 573-100 chr2 210415063 210415293 + 3 NA intron (NR_110606, intron 1 of 4) L1PA15|LINE|L1 61527 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 528-7 chr1 62207006 62207374 + 3 NA exon (NM_001164835, exon 4 of 5) exon (NM_001164835, exon 4 of 5) 12341 NM_019079 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 554-140 chr21 27611807 27612029 + 3 NA Intergenic Intergenic -110461 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 801-18 chr16 72751113 72751688 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -86430 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 337-399 chr4 61950531 61950695 + 3 NA intron (NM_001371343, intron 16 of 23) MER65C|LTR|ERV1 211152 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 434-219 chr5 36337866 36338164 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 -36113 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 1049-5 chr12 37919052 37919574 + 3 NA Intergenic ALR/Alpha|Satellite|centr -397461 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1024-3 chr1 115258371 115258992 + 3 NA Intergenic LTR8B|LTR|ERV1 -24353 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 515-243 chr7 9026211 9026490 + 3 NA Intergenic Intergenic 592741 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 692-63 chr3 34730116 34730399 + 3 NA Intergenic L1PA15|LINE|L1 663766 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 281-406 chr7 6125547 6125720 + 3 NA intron (NM_032172, intron 3 of 17) L1MEc|LINE|L1 20684 NM_032172 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 495-36 chr11 86081792 86082005 + 3 NA Intergenic L1MC1|LINE|L1 -12038 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 419-283 chr8 14145655 14145869 + 3 NA intron (NM_001322880, intron 4 of 6) L1MA1|LINE|L1 516072 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 257-28 chr1 228853156 228853290 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie 117744 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 464-75 chr15 45907571 45907828 + 3 NA intron (NR_135680, intron 2 of 4) MER65-int|LTR|ERV1 202504 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 734-22 chr16 35687344 35687784 + 3 NA Intergenic HSAT4|Satellite|centr -58988 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 289-483 chr9 9185425 9185589 + 3 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 327489 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 737-13 chr12 30888236 30888664 + 3 NA Intergenic L1ME3Cz|LINE|L1 -38298 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 443-158 chr2 181818623 181818908 + 3 NA Intergenic Intergenic -72965 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 636-157 chr9 13818280 13818549 + 3 NA Intergenic Intergenic -109557 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 475-66 chr12 97192467 97192657 + 3 NA Intergenic Tigger3|DNA|TcMar-Tigger -270214 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 871-13 chr2 51645288 51645906 + 3 NA intron (NR_135237, intron 5 of 10) L1PB|LINE|L1 612996 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 503-246 chr6 75975895 75976071 + 3 NA intron (NM_001563, intron 12 of 16) MER58B|DNA|hAT-Charlie 96679 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 675-79 chr6 40188338 40188748 + 3 NA Intergenic Intergenic 167463 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 517-168 chr22 19683731 19684057 + 3 NA Intergenic L1MDa|LINE|L1 -30609 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 861-36 chr8 137363127 137363685 + 3 NA Intergenic MIRb|SINE|MIR 50182 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 370-255 chr2 170550206 170550390 + 3 NA intron (NM_001083615, intron 31 of 33) intron (NM_001083615, intron 31 of 33) 164269 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 428-296 chr8 78844600 78844796 + 3 NA Intergenic Intergenic 7169 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 778-53 chr5 1718596 1719124 + 3 NA Intergenic L1MEc|LINE|L1 -9992 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 308-58 chr10 51962916 51963095 + 3 NA intron (NM_001098512, intron 5 of 17) BLACKJACK|DNA|hAT-Blackjack -263410 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 445-70 chr14 68154200 68154446 + 3 NA intron (NM_133509, intron 7 of 10) L1MEc|LINE|L1 330731 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 428-195 chr3 165661452 165661680 + 3 NA Intergenic L1ME1|LINE|L1 175857 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 455-199 chr4 166743096 166743394 + 3 NA intron (NM_001040159, intron 8 of 10) intron (NM_001040159, intron 8 of 10) 491181 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 399-29 chr10 23273308 23273513 + 3 NA intron (NM_001365862, intron 8 of 15) L1MEd|LINE|L1 -70547 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 449-112 chr2 19176300 19176558 + 3 NA Intergenic L2b|LINE|L2 -149458 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 422-177 chr3 16737032 16737298 + 3 NA Intergenic L1M3|LINE|L1 -131742 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 346-324 chr3 115965056 115965221 + 3 NA intron (NM_001318915, intron 3 of 8) L1ME3E|LINE|L1 -60012 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 283-290 chr3 44699194 44699319 + 3 NA Intergenic Intergenic -13387 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 547-96 chr2 39573268 39573478 + 3 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) -92125 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 459-26 chr10 18325384 18325651 + 3 NA intron (NM_000724, intron 1 of 12) (TCTT)n|Simple_repeat|Simple_repeat -15192 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 450-315 chr8 134066411 134066707 + 3 NA Intergenic Intergenic 180063 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 315-45 chr10 19180434 19180618 + 3 NA intron (NM_001142308, intron 14 of 39) L1MA9|LINE|L1 131725 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 277-453 chr9 135731338 135731485 + 3 NA intron (NM_020822, intron 2 of 30) HAL1b|LINE|L1 29226 NM_020822 57582 Hs.104950 NM_020822 ENSG00000107147 KCNT1 EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2 potassium sodium-activated channel subfamily T member 1 protein-coding 553-69 chr15 37191572 37191772 + 3 NA Intergenic L1ME2z|LINE|L1 -90361 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 470-168 chr3 35277529 35277727 + 3 NA intron (NR_110817, intron 2 of 3) L1M2|LINE|L1 116395 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 475-262 chr7 48442315 48442580 + 3 NA intron (NM_152701, intron 42 of 61) intron (NM_152701, intron 42 of 61) 270989 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 844-5 chr10 2960834 2961160 + 3 NA Intergenic Intergenic 105936 NR_160682 101927824 NR_160681 LOC101927824 - uncharacterized LOC101927824 ncRNA 242-368 chr7 41864155 41864322 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -161148 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 639-47 chr16 46488371 46488682 + 3 NA intron (NR_026556, intron 12 of 16) L1MA5|LINE|L1 80571 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 459-101 chr16 56877476 56877769 + 3 NA intron (NM_001126108, intron 8 of 25) intron (NM_001126108, intron 8 of 25) 12415 NM_001126108 6559 Hs.669115 NM_000339 ENSG00000070915 SLC12A3 NCC|NCCT|TSC solute carrier family 12 member 3 protein-coding 422-240 chr5 68152625 68152842 + 3 NA Intergenic Intergenic -37143 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 459-252 chr5 167872827 167873039 + 3 NA intron (NM_001080428, intron 1 of 24) intron (NM_001080428, intron 1 of 24) 118004 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 377-239 chr2 229739754 229739983 + 3 NA Intergenic L1M4|LINE|L1 -25313 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 521-221 chr6 121375330 121375581 + 3 NA Intergenic L1M1|LINE|L1 -40726 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 414-343 chr9 2324809 2324982 + 3 NA Intergenic Intergenic 166439 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 322-224 chr19 7315292 7315462 + 3 NA Intergenic AluJr|SINE|Alu -20963 NM_001079817 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 494-87 chr16 76744760 76745038 + 3 NA Intergenic Intergenic 109901 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 463-306 chr9 38207490 38207692 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -138364 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 470-32 chr11 21097102 21097283 + 3 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 427606 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 527-120 chr2 27772257 27772660 + 3 NA intron (NM_145330, intron 1 of 2) intron (NM_145330, intron 1 of 2) 739 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 781-5 chr10 39194166 39194559 + 3 NA Intergenic ALR/Alpha|Satellite|centr 497766 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 381-358 chr7 68331742 68331956 + 3 NA Intergenic Intergenic 311596 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 514-259 chr7 9972481 9972732 + 3 NA Intergenic L1MD1|LINE|L1 338336 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 438-70 chr13 27687034 27687186 + 3 NA Intergenic L1M4b|LINE|L1 65218 NM_152705 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 457-9 chr1 102705261 102705483 + 3 NA Intergenic Intergenic 403124 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 320-139 chr13 106436937 106437131 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 60470 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 745-76 chr8 123885657 123886116 + 3 NA intron (NM_001039112, intron 1 of 40) L2c|LINE|L2 33899 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 434-288 chr8 108855011 108855194 + 3 NA Intergenic L1M4b|LINE|L1 -67508 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 375-174 chr18 6516268 6516502 + 3 NA intron (NR_120518, intron 2 of 5) AluJr4|SINE|Alu 4969 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 340-264 chr2 80173228 80173377 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 131450 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 715-14 chr12 112959586 112959965 + 3 NA intron (NM_006187, intron 7 of 15) L1ME3|LINE|L1 -18744 NM_002535 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 490-64 chr12 10256118 10256513 + 3 NA intron (NM_001351060, intron 2 of 8) L1M4|LINE|L1 17354 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 843-36 chr6 28329732 28330114 + 3 NA intron (NM_030899, intron 1 of 3) intron (NM_030899, intron 1 of 3) 6211 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 376-17 chr1 118363890 118364063 + 3 NA Intergenic Intergenic -178748 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 523-194 chr4 30761822 30762025 + 3 NA intron (NM_032457, intron 1 of 2) MIRb|SINE|MIR 41554 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 375-97 chr12 37784331 37784537 + 3 NA Intergenic ALR/Alpha|Satellite|centr -532340 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 572-24 chr11 43192016 43192394 + 3 NA Intergenic Intergenic 77164 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 515-193 chr4 175108895 175109088 + 3 NA Intergenic L2a|LINE|L2 190633 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 963-20 chr19 43875782 43876274 + 3 NA intron (NM_001033719, intron 1 of 1) L1M5|LINE|L1 4108 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 188-187 chr6 162761318 162761438 + 3 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 33408 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 1142-7 chr8 89559071 89559623 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger 198364 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 265-336 chr6 66001435 66001582 + 3 NA Intergenic L1MB1|LINE|L1 213629 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 415-152 chr20 5402709 5402866 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 42961 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 252-106 chr13 99801551 99801653 + 3 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) -72601 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 586-114 chr4 106799984 106800224 + 3 NA Intergenic Intergenic 236209 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 491-130 chr2 129125247 129125555 + 3 NA Intergenic L1PBa|LINE|L1 148490 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 426-56 chr12 4249729 4249880 + 3 NA intron (NR_125790, intron 1 of 1) intron (NR_125790, intron 1 of 1) -23958 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 472-7 chr1 70762313 70762476 + 3 NA intron (NR_125938, intron 5 of 6) L1MEf|LINE|L1 55941 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 494-124 chr2 52061329 52061685 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -309141 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 290-434 chr7 103637184 103637374 + 3 NA intron (NM_005045, intron 17 of 64) intron (NM_005045, intron 17 of 64) -191072 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 361-377 chr5 150191224 150191437 + 3 NA intron (NM_014228, intron 1 of 13) (ACACTC)n|Simple_repeat|Simple_repeat 1268 NM_014228 6534 Hs.241597 NM_014228 ENSG00000011083 SLC6A7 PROT solute carrier family 6 member 7 protein-coding 503-212 chr4 54458868 54459139 + 3 NA Intergenic L1P2|LINE|L1 126111 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 529-200 chr7 3745128 3745388 + 3 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -384427 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 325-207 chr16 83194514 83194678 + 3 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -204298 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 437-244 chr6 147957601 147957806 + 3 NA Intergenic Intergenic -314625 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 478-204 chr4 44179299 44179481 + 3 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 162328 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 896-7 chr14 62552527 62553118 + 3 NA Intergenic L1MA3|LINE|L1 -412849 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 502-240 chr7 7376878 7377143 + 3 NA intron (NM_001037763, intron 30 of 34) L1M5|LINE|L1 121856 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 704-48 chr20 24291633 24292021 + 3 NA Intergenic L1PA17|LINE|L1 92060 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 253-309 chr4 172753546 172753687 + 3 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) -26738 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 589-93 chr3 118011784 118012031 + 3 NA Intergenic Intergenic -320982 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 601-39 chr14 52895797 52896087 + 3 NA intron (NM_006832, intron 3 of 14) Tigger3c|DNA|TcMar-Tigger 55108 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 855-21 chr17 66101781 66102137 + 3 NA intron (NM_001353129, intron 6 of 26) intron (NM_001353129, intron 6 of 26) 89933 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 1545 chr15 24631445 24632345 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -43499 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 373-410 chr8 82222639 82222899 + 3 NA Intergenic L1ME3|LINE|L1 -380483 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 670-50 chr18 13991967 13992385 + 3 NA Intergenic Intergenic -76469 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 359-192 chr17 72508937 72509079 + 3 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 83796 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 199-75 chr16 74437545 74437665 + 3 NA Intergenic L1MEf|LINE|L1 -16135 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 611-123 chr5 125849284 125849508 + 3 NA Intergenic L1PA8|LINE|L1 -330181 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 331-207 chr17 69600727 69600863 + 3 NA intron (NR_109972, intron 2 of 4) intron (NR_109972, intron 2 of 4) 6808 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 419-117 chr17 69040773 69040919 + 3 NA intron (NM_080283, intron 6 of 38) (ATAC)n|Simple_repeat|Simple_repeat 20081 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 517-157 chr20 20335858 20336129 + 3 NA intron (NM_015585, intron 25 of 26) MIRb|SINE|MIR -32111 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 699-65 chr21 22358817 22359316 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 260449 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 489-53 chr12 40786529 40786795 + 3 NA intron (NM_001256063, intron 1 of 15) L1MEd|LINE|L1 -41276 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 537-261 chr8 126786216 126786483 + 3 NA Intergenic L1ME2|LINE|L1 -226805 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 679-63 chr20 38335602 38336032 + 3 NA intron (NM_001725, intron 14 of 14) intron (NM_001725, intron 14 of 14) -10665 NM_004139 3929 Hs.154078 NM_004139 ENSG00000129988 LBP BPIFD2 lipopolysaccharide binding protein protein-coding 267-366 chr6 48024105 48024234 + 3 NA intron (NM_207499, intron 1 of 2) MIRb|SINE|MIR 44520 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 438-46 chr11 12623367 12623578 + 3 NA Intergenic L1MB7|LINE|L1 -50949 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 527-228 chr6 103295685 103295871 + 3 NA Intergenic L1MEc|LINE|L1 1563768 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 527-119 chr19 53151023 53151332 + 3 NA intron (NM_001172675, intron 2 of 4) MIR|SINE|MIR 7876 NM_032584 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 419-261 chr6 152874275 152874596 + 3 NA Intergenic MER20B|DNA|hAT-Charlie 108606 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 476-85 chr14 66436173 66436450 + 3 NA Intergenic Intergenic -50060 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 315-58 chr10 65334942 65335079 + 3 NA Intergenic Intergenic -236415 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 759-44 chr20 51486233 51486554 + 3 NA intron (NM_012340, intron 3 of 10) L2a|LINE|L2 -33416 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 707-20 chr13 75944878 75945303 + 3 NA Intergenic MIRb|SINE|MIR -9958 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 618-124 chr8 33067852 33068199 + 3 NA Intergenic L1PA13|LINE|L1 346190 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 448-247 chr6 146168541 146168767 + 3 NA intron (NM_001278065, intron 3 of 9) L1ME1|LINE|L1 139456 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 604-22 chr10 93902910 93903190 + 3 NA 3' UTR (NM_001134658, exon 3 of 3) 3' UTR (NM_001134658, exon 3 of 3) 9072 NR_144337 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 912-23 chr2 66893185 66893718 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -10985 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 496-255 chr7 22641411 22641717 + 3 NA Intergenic L1MA9|LINE|L1 23969 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 720-12 chr10 84715354 84715864 + 3 NA Intergenic Intergenic 290440 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 330-325 chr20 56276260 56276500 + 3 NA Intergenic MER52-int|LTR|ERV1 27648 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 461-75 chr14 45754479 45754660 + 3 NA Intergenic L1P1|LINE|L1 -38967 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 735-75 chr6 137009975 137010371 + 3 NA intron (NM_001278723, intron 2 of 5) intron (NM_001278723, intron 2 of 5) -16942 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 1077-15 chr6 69403437 69403917 + 3 NA Intergenic Charlie1|DNA|hAT-Charlie 392789 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 621-40 chr15 39434409 39434689 + 3 NA Intergenic Intergenic -146530 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 331-455 chr6 56401753 56401918 + 3 NA Intergenic L1M4a2|LINE|L1 -7707 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 405-2 chr1 43488178 43488366 + 3 NA Intergenic L1MB7|LINE|L1 -34283 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 585-47 chr15 33440813 33441050 + 3 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 129964 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 698-38 chr2 138317942 138318343 + 3 NA Intergenic Intergenic -183628 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 515-133 chr2 191446022 191446267 + 3 NA Intergenic HAL1M8|LINE|L1 200740 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 741-63 chr6 127053305 127053688 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR -65175 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 827-28 chr20 19055173 19055532 + 3 NA Intergenic L1MC2|LINE|L1 -157290 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 692-33 chr16 12938103 12938524 + 3 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 36715 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 296-454 chr8 12957405 12957532 + 3 NA intron (NM_020844, intron 1 of 4) intron (NM_020844, intron 1 of 4) 11795 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 445-37 chr11 78509521 78509669 + 3 NA intron (NM_024678, intron 6 of 13) L1M4c|LINE|L1 -23581 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 483-142 chr20 52989605 52989806 + 3 NA intron (NM_173485, intron 1 of 2) L1ME3Cz|LINE|L1 17347 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 567-189 chr8 106149944 106150226 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -89582 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 508-124 chr2 223925824 223926021 + 3 NA intron (NM_020830, intron 1 of 11) Tigger1|DNA|TcMar-Tigger 19413 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|FENS1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 480 chr1 6836798 6837033 + 3 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 51461 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 585-61 chr18 2781304 2781651 + 3 NA intron (NM_015295, intron 44 of 47) intron (NM_015295, intron 44 of 47) -65529 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 448-43 chr10 118106347 118106570 + 3 NA intron (NR_026940, intron 3 of 3) MIR|SINE|MIR -59517 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 508-3 chr1 49195242 49195420 + 3 NA intron (NM_001323575, intron 4 of 12) L1M2|LINE|L1 -62080 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 248-196 chr2 105683768 105683874 + 3 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -61091 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 1065-22 chrX 75973232 75974003 + 3 NA Intergenic L1MB1|LINE|L1 -188363 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 672-51 chr2 20869325 20869576 + 3 NA Intergenic L1MB4|LINE|L1 -46320 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 410-82 chr13 105993070 105993242 + 3 NA Intergenic AluSz6|SINE|Alu 286326 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 516-79 chr15 25574786 25575033 + 3 NA Intergenic L1MEg|LINE|L1 -135853 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 900-17 chr19 53080508 53080862 + 3 NA intron (NM_001322126, intron 4 of 6) L1PA17|LINE|L1 6352 NM_001322136 90338 Hs.655967 NM_033288 ENSG00000170949 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 454-147 chr2 51400421 51400687 + 3 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 367953 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 558-228 chr8 142379801 142380147 + 3 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 23208 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 531-62 chr14 55105036 55105256 + 3 NA Intergenic FLAM_C|SINE|Alu -24106 NM_001357678 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 533-26 chr11 83336984 83337324 + 3 NA Intergenic Intergenic -50747 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 497-106 chr18 76093825 76094078 + 3 NA Intergenic Intergenic -29047 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 480-44 chr11 50543837 50544053 + 3 NA Intergenic ALR/Alpha|Satellite|centr 134798 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 757-54 chr6 162064192 162064460 + 3 NA intron (NM_004562, intron 4 of 11) L1ME2|LINE|L1 593349 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 352-508 chr7 104766123 104766307 + 3 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 37877 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 1157 chr1 246980556 246981436 + 3 NA intron (NR_037894, intron 4 of 6) L1M2|LINE|L1 27061 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 347-362 chr4 170691454 170691626 + 3 NA Intergenic Intergenic 52195 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 1218-7 chr8 137056170 137056598 + 3 NA Intergenic Intergenic 357204 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 728-109 chr9 134851001 134851488 + 3 NA promoter-TSS (NR_037460) promoter-TSS (NR_037460) -437 NR_039696 100616212 NR_039696 ENSG00000266514 MIR3689F mir-3689f microRNA 3689f ncRNA 369-131 chr15 49955526 49955723 + 3 NA intron (NR_073597, intron 14 of 26) L1MB1|LINE|L1 157755 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 754-59 chr4 102316947 102317265 + 3 NA intron (NM_022154, intron 1 of 7) MLT1A|LTR|ERVL-MaLR 7206 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 564-20 chr10 98586336 98586681 + 3 NA intron (NM_021828, intron 9 of 11) MER113|DNA|hAT-Charlie -139545 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 407-149 chr2 137641253 137641419 + 3 NA intron (NM_001316349, intron 20 of 27) L2a|LINE|L2 286596 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 577-132 chr4 48154283 48154656 + 3 NA intron (NM_003215, intron 9 of 17) MER57A-int|LTR|ERV1 -20219 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 556-132 chr20 57804272 57804580 + 3 NA Intergenic Intergenic -92890 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 405-334 chr8 131320730 131320959 + 3 NA Intergenic Intergenic -279935 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 228-291 chr6 65654288 65654457 + 3 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 52853 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 543-209 chr5 167448563 167448969 + 3 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -124893 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 933-9 chr12 125421547 125421931 + 3 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 95123 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 323-163 chr15 61266188 61266334 + 3 NA Intergenic L1MA4|LINE|L1 -36959 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 1025-9 chr18 13155134 13155687 + 3 NA Intergenic L1MA4|LINE|L1 -63350 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 360-408 chr6 67075688 67075853 + 3 NA Intergenic L1ME3D|LINE|L1 -979581 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 432-255 chr6 132103352 132103567 + 3 NA Intergenic Intergenic 11804 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 676-61 chr2 100219139 100219544 + 3 NA intron (NR_103730, intron 1 of 2) MIRc|SINE|MIR 11087 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 272-225 chr2 186002394 186002582 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 83829 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 488-136 chr2 76358430 76358718 + 3 NA Intergenic Intergenic -627391 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 388-60 chr11 49134564 49134742 + 3 NA Intergenic Intergenic 73949 NM_001193471 2346 Hs.551896 NM_004476 ENSG00000086205 FOLH1 FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP folate hydrolase 1 protein-coding 574-110 chr3 118841080 118841337 + 3 NA Intergenic L1ME1|LINE|L1 -30375 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 474-87 chr14 84955244 84955563 + 3 NA Intergenic Intergenic -316529 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 533-140 chr3 139084085 139084372 + 3 NA Intergenic L1ME3A|LINE|L1 -19957 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 715-62 chr4 74782515 74782980 + 3 NA intron (NM_001316963, intron 1 of 4) L1PA11|LINE|L1 11776 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 577-120 chr3 104745105 104745449 + 3 NA Intergenic Intergenic -621436 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 159-21 chr12 37951504 37951564 + 3 NA Intergenic ALR/Alpha|Satellite|centr -365240 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 631-55 chr1_KI270709v1_random 7090 7391 + 3 NA NA Intergenic NA NA 495-144 chr22 26933755 26934024 + 3 NA Intergenic MER3|DNA|hAT-Charlie 30597 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 339-613 chr9 108824871 108825036 + 3 NA Intergenic Intergenic 31033 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 511-118 chr2 60600559 60600841 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -47046 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 465-171 chr3 34464757 34465048 + 3 NA Intergenic LTR101_Mam|LTR|ERVL 666272 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 812-46 chr7 5071241 5071667 + 3 NA promoter-TSS (NR_015343) promoter-TSS (NR_015343) -606 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 390-298 chr5 98618890 98619113 + 3 NA Intergenic Intergenic -149631 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 525-204 chr5 108551049 108551346 + 3 NA Intergenic Intergenic -169099 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 416-242 chr4 18626447 18626614 + 3 NA Intergenic Intergenic -604655 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 446-20 chr1 188019019 188019369 + 3 NA Intergenic Intergenic 575566 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 668 chr1 30627640 30627976 + 3 NA Intergenic LTR26|LTR|ERV1 -90964 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 581-132 chr5 27690629 27690964 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 218504 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 325-276 chr2 118551225 118551382 + 3 NA Intergenic LTR67B|LTR|ERVL 51663 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 443-210 chr3 126261539 126261805 + 3 NA Intergenic Intergenic -80486 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 648-30 chr12 66359927 66360208 + 3 NA intron (NM_001366722, intron 23 of 24) MIRb|SINE|MIR 57522 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 442-293 chr8 116034483 116034656 + 3 NA intron (NR_046215, intron 7 of 13) L1MC3|LINE|L1 290490 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 288-10 chr1 66487073 66487256 + 3 NA Intergenic L1ME4a|LINE|L1 -46429 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 359-388 chr5 41387499 41387654 + 3 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 123025 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 603-55 chr14 97974508 97974830 + 3 NA intron (NR_152748, intron 1 of 2) MIR|SINE|MIR 3455 NR_152748 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 418-113 chr2 64126673 64126844 + 3 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 17662 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 339-528 chr7 48814049 48814238 + 3 NA Intergenic Intergenic -110404 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 638-41 chr14 82325931 82326398 + 3 NA Intergenic L1M2|LINE|L1 -316468 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 279-73 chr12 3923341 3923553 + 3 NA Intergenic Intergenic -49999 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 581-83 chr2 135929509 135929929 + 3 NA intron (NM_001293312, intron 6 of 14) intron (NM_001293312, intron 6 of 14) -53276 NM_005915 4175 Hs.444118 NM_005915 ENSG00000076003 MCM6 MCG40308|Mis5|P105MCM minichromosome maintenance complex component 6 protein-coding 618-25 chr12 63127300 63127760 + 3 NA Intergenic Intergenic 25280 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 542-131 chr3 74021616 74021947 + 3 NA Intergenic HAL1b|LINE|L1 212537 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 690-63 chr2 205528852 205529419 + 3 NA intron (NM_205863, intron 20 of 21) intron (NM_205863, intron 20 of 21) -153365 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 717-92 chr9 105569231 105569729 + 3 NA intron (NM_001351498, intron 1 of 9) intron (NM_001351498, intron 1 of 9) 11349 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 410-38 chr10 69563477 69563707 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 9830 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 582-19 chr11 95570274 95570631 + 3 NA Intergenic L3|LINE|CR1 219330 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 498-49 chr11 27728435 27728655 + 3 NA Intergenic Intergenic -6515 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 296-440 chr7 64126326 64126521 + 3 NA Intergenic MER4CL34|LTR|ERV1 -80780 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 402-116 chr18 3426352 3426569 + 3 NA intron (NM_001278686, intron 2 of 3) AluSz|SINE|Alu 13604 NM_001278686 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 396-125 chr17 32859175 32859336 + 3 NA intron (NM_015194, intron 1 of 21) L1MC4|LINE|L1 17869 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 476-8 chr1 95735552 95735739 + 3 NA Intergenic Intergenic 225529 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 435-207 chr5 130009184 130009353 + 3 NA intron (NM_175856, intron 2 of 2) L1PA15|LINE|L1 104803 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 527-185 chr4 30490592 30490928 + 3 NA Intergenic L1M4b|LINE|L1 -229609 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 464-80 chr15 100300037 100300202 + 3 NA intron (NM_139057, intron 3 of 21) intron (NM_139057, intron 3 of 21) 41856 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 638-103 chr4 42223109 42223543 + 3 NA Intergenic AluSq2|SINE|Alu -70671 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 441-84 chr15 27690832 27691061 + 3 NA Intergenic Intergenic 408369 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 440-122 chr2 98321983 98322158 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -24085 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 358-217 chr2 79456051 79456284 + 3 NA Intergenic Intergenic 44677 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 577-6 chr1 58852832 58853195 + 3 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 67862 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 460-103 chr17 1970981 1971201 + 3 NA intron (NM_178568, intron 1 of 1) THE1D|LTR|ERVL-MaLR -46625 NR_135642 105371485 Hs.655867 NR_135642 ENSG00000228133 LOC105371485 - uncharacterized LOC105371485 ncRNA 213-72 chr12 70411477 70411631 + 3 NA intron (NM_014505, intron 2 of 2) intron (NM_014505, intron 2 of 2) 45264 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 558-17 chr10 6490647 6490910 + 3 NA intron (NM_001282644, intron 8 of 17) AluJo|SINE|Alu 89498 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 745-16 chr16 59720290 59720730 + 3 NA Intergenic MIRc|SINE|MIR 34681 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 943 chr10 5408137 5408703 + 3 NA Intergenic Intergenic -3592 NM_001171864 79861 Hs.163079 NM_024803 ENSG00000178462 TUBAL3 - tubulin alpha like 3 protein-coding 462-236 chr5 140790022 140790292 + 3 NA intron (NM_018900, intron 1 of 3) L4_C_Mam|LINE|RTE-X 4021 NM_031410 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 440-24 chr10 48835929 48836209 + 3 NA intron (NM_020945, intron 39 of 61) intron (NM_020945, intron 39 of 61) 78166 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 738-52 chr5 131870589 131871053 + 3 NA intron (NM_001303622, intron 9 of 12) L2|LINE|L2 -73804 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 484-56 chr13 99153197 99153404 + 3 NA Intergenic Intergenic 47455 NR_036532 100289373 Hs.225914 NR_036531 ENSG00000228889 UBAC2-AS1 - UBAC2 antisense RNA 1 ncRNA 429-316 chr8 137228193 137228460 + 3 NA Intergenic Intergenic 185262 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 518-269 chr7 27270477 27270808 + 3 NA Intergenic AluJr4|SINE|Alu -23413 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 346-244 chr2 81010475 81010666 + 3 NA Intergenic Intergenic 456376 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 462-150 chr2 162230940 162231178 + 3 NA intron (NM_004460, intron 2 of 25) intron (NM_004460, intron 2 of 25) 12386 NM_004460 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 406-226 chr5 32748238 32748482 + 3 NA intron (NM_001364460, intron 2 of 6) LTR33A_|LTR|ERVL 37039 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 359-365 chr4 87211833 87212011 + 3 NA intron (NM_001292006, intron 1 of 9) intron (NM_001292006, intron 1 of 9) 8346 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 703-9 chr10 19034378 19034721 + 3 NA Intergenic MER58C|DNA|hAT-Charlie -14252 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 416-93 chr12 61383814 61384037 + 3 NA Intergenic Intergenic 808914 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 492-124 chr2 23784208 23784464 + 3 NA intron (NR_125717, intron 22 of 28) intron (NR_125717, intron 22 of 28) 142787 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 416-100 chr12 118832548 118832703 + 3 NA intron (NR_134997, intron 2 of 2) L1MEd|LINE|L1 911 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 634-4 chr1 116527463 116527738 + 3 NA intron (NM_001779, intron 3 of 5) L1MC1|LINE|L1 32511 NR_039621 100616384 NR_039621 ENSG00000264419 MIR548AC - microRNA 548ac ncRNA 619-112 chr6 80901619 80901959 + 3 NA Intergenic Intergenic 795118 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 363-32 chr1 234272676 234272864 + 3 NA intron (NM_173508, intron 3 of 7) intron (NM_173508, intron 3 of 7) -33697 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 575-181 chr7 19822676 19823031 + 3 NA Intergenic Intergenic -49236 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 625-6 chr1 177349579 177349913 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR -1840 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 453-125 chr2 128036821 128036999 + 3 NA Intergenic LTR10B1|LTR|ERV1 -8851 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 318-260 chr2 50247615 50247815 + 3 NA intron (NM_001330093, intron 17 of 22) L1MC4a|LINE|L1 100039 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 500-315 chr9 32259507 32259834 + 3 NA Intergenic Intergenic -124933 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 559-151 chr5 152041272 152041490 + 3 NA intron (NR_109876, intron 1 of 2) L1ME3F|LINE|L1 82483 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 454-39 chr10 106631703 106631966 + 3 NA intron (NM_001206569, intron 18 of 25) intron (NM_001206569, intron 18 of 25) 491669 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 715-39 chr2 110134023 110134460 + 3 NA intron (NM_207181, intron 16 of 19) L1M4c|LINE|L1 -17675 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 570-183 chr7 88801662 88801925 + 3 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -6056 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 507-189 chr4 162907992 162908189 + 3 NA Intergenic MIRb|SINE|MIR 185538 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 352-393 chr4 153904428 153904604 + 3 NA Intergenic Intergenic -115433 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 626-41 chr15 59655021 59655280 + 3 NA intron (NM_004492, intron 1 of 4) L2a|LINE|L2 2155 NM_001320929 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 608-29 chr12 23523300 23523634 + 3 NA Intergenic L1MEg|LINE|L1 61119 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 440-80 chr16 3206577 3206813 + 3 NA TTS (NM_001370641) TTS (NM_001370641) -8867 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 574-63 chr19 21388458 21388749 + 3 NA TTS (NM_001355237) TTS (NM_001355237) -8530 NM_175910 284443 Hs.656558 NM_145326 ENSG00000196268 ZNF493 - zinc finger protein 493 protein-coding 681-85 chr8 68895681 68896016 + 3 NA Intergenic Intergenic 208342 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 292-230 chr2 138802505 138802684 + 3 NA Intergenic MLT2E|LTR|ERVL -22204 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 816-8 chr14 33923702 33924121 + 3 NA TTS (NM_022073) TTS (NM_022073) 27163 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 541-214 chr7 19105840 19106179 + 3 NA Intergenic Intergenic 11627 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 438-287 chr8 137061710 137062025 + 3 NA Intergenic L1MEb|LINE|L1 351721 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 489-225 chr6 53117960 53118135 + 3 NA Intergenic L1MC|LINE|L1 30794 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 820-60 chr8 48412622 48413099 + 3 NA Intergenic L1MB5|LINE|L1 -138707 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 557-113 chr2 155790313 155790574 + 3 NA Intergenic Intergenic 464488 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 960-40 chr8 34233234 34233761 + 3 NA Intergenic Intergenic -550424 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 513-201 chr4 38999513 38999734 + 3 NA intron (NM_001303228, intron 1 of 6) MLT1D|LTR|ERVL-MaLR 32786 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 826-57 chr6 83831877 83832539 + 3 NA Intergenic Intergenic -21058 NM_001009994 134701 Hs.149454 NM_001009994 ENSG00000203877 RIPPLY2 C6orf159|SCDO6|dJ237I15.1 ripply transcriptional repressor 2 protein-coding 450-248 chr5 121726509 121726737 + 3 NA Intergenic L1PA8|LINE|L1 -125259 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 283-464 chr9 89759185 89759350 + 3 NA Intergenic Intergenic 119484 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 334-73 chr10 111882220 111882339 + 3 NA Intergenic Intergenic 301486 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 388-159 chr2 68007924 68008130 + 3 NA Intergenic AluSx3|SINE|Alu 54977 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 343-163 chr15 70865971 70866123 + 3 NA intron (NM_001284357, intron 1 of 16) L2c|LINE|L2 -11890 NM_018357 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 454-5 chr1 59245107 59245350 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -51585 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 642-54 chr2 49156791 49157233 + 3 NA Intergenic L1ME3F|LINE|L1 -2485 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 747-3 chr1 74014580 74014970 + 3 NA Intergenic L1P2|LINE|L1 183401 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 864-50 chr8 127410188 127410576 + 3 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) -5443 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 491-147 chr20 53109201 53109513 + 3 NA intron (NM_173485, intron 1 of 2) (TCTG)n|Simple_repeat|Simple_repeat -75926 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 150-110 chr8 124695636 124695714 + 3 NA intron (NM_001282971, intron 3 of 14) L1ME3G|LINE|L1 32798 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 450-140 chr2 79435033 79435290 + 3 NA Intergenic Intergenic 65683 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 993-16 chr4 43225639 43226060 + 3 NA Intergenic L1PA16|LINE|L1 266694 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 515-245 chr7 11866817 11867072 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -34746 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 583-154 chr7 104110769 104111180 + 3 NA Intergenic Intergenic 97039 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 488-120 chr19 38999083 38999314 + 3 NA Intergenic L1ME3D|LINE|L1 -23456 NM_024907 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 601-87 chr22 34917572 34917896 + 3 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 80182 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 516-279 chrX 80656803 80656989 + 3 NA Intergenic Intergenic 152981 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 782-45 chr3 62895428 62895921 + 3 NA Intergenic Intergenic -20258 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 513-12 chr1 168738015 168738310 + 3 NA Intergenic LTR33|LTR|ERVL -8956 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 235-165 chr2 51184539 51184666 + 3 NA intron (NR_135237, intron 2 of 10) L1ME3E|LINE|L1 152001 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 437-259 chr7 94893151 94893370 + 3 NA Intergenic L1M5|LINE|L1 -14334 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 397-168 chr2 138005306 138005475 + 3 NA intron (NM_006895, intron 5 of 5) intron (NM_006895, intron 5 of 5) 40917 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 457-165 chr3 140408837 140409065 + 3 NA intron (NM_022131, intron 4 of 16) intron (NM_022131, intron 4 of 16) 99838 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 536-12 chr1 107539864 107540080 + 3 NA Intergenic Intergenic 148527 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 530-269 chr9 21487007 21487466 + 3 NA intron (NR_152877, intron 1 of 3) Zaphod|DNA|hAT-Tip100 -4923 NM_176891 338376 Hs.682604 NM_176891 ENSG00000184995 IFNE IFN-E|IFNE1|IFNT1|INFE1|PRO655 interferon epsilon protein-coding 653-126 chr8 134398282 134398645 + 3 NA Intergenic L1ME3|LINE|L1 -199608 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 320-558 chr8 104300309 104300525 + 3 NA Intergenic L1MEd|LINE|L1 -39379 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 208-174 chr3 147155890 147156017 + 3 NA Intergenic Intergenic 234030 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 506-123 chr2 17556362 17556650 + 3 NA intron (NM_001366806, intron 1 of 3) MIRb|SINE|MIR 15810 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 564-110 chr20 18843966 18844278 + 3 NA Intergenic Intergenic -13919 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 293-82 chr12 39826314 39826522 + 3 NA intron (NR_135051, intron 18 of 18) L1MEh|LINE|L1 200235 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 351-3 chr1 40196919 40197064 + 3 NA intron (NM_012421, intron 4 of 7) intron (NM_012421, intron 4 of 7) 35604 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 453-31 chr10 96175583 96175835 + 3 NA intron (NR_138482, intron 3 of 4) ERV3-16A3_LTR|LTR|ERVL 45087 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 598-143 chr8 104882766 104883092 + 3 NA Intergenic Intergenic -293905 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 436-211 chr4 81940904 81941198 + 3 NA Intergenic L1MA5|LINE|L1 432940 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 736-36 chr2 16356931 16357333 + 3 NA Intergenic OldhAT1|DNA|hAT-Ac 306705 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 558-113 chr20 10279054 10279338 + 3 NA intron (NM_001322907, intron 5 of 9) intron (NM_001322907, intron 5 of 9) -59690 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 374-175 chr2 23093067 23093252 + 3 NA Intergenic Intergenic -292020 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 645-111 chr7 29123418 29123821 + 3 NA intron (NM_001371261, intron 2 of 13) (A)n|Simple_repeat|Simple_repeat -1414 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 332-505 chr7 116358655 116358891 + 3 NA Intergenic AluY|SINE|Alu -72046 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 612-128 chr7 33498017 33498387 + 3 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 368638 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 516-185 chr4 14241519 14241754 + 3 NA Intergenic Intergenic 129668 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 498-54 chr11 88090266 88090480 + 3 NA Intergenic MER66-int|LTR|ERV1 85070 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 399-311 chr8 111755791 111756048 + 3 NA Intergenic Intergenic 379280 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 389-292 chr5 83352465 83352663 + 3 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -119110 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 607-68 chr2 19231318 19231685 + 3 NA Intergenic Intergenic -116928 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 696-99 chr7 52891591 52891956 + 3 NA Intergenic Intergenic -143860 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 1253-10 chr8 137401091 137401769 + 3 NA Intergenic L1PA13|LINE|L1 12158 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 446-326 chr9 22824635 22824880 + 3 NA TTS (NR_038977) TTS (NR_038977) 178557 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 421 chr1 5335397 5335595 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 527245 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 421-153 chr2 181647074 181647288 + 3 NA intron (NR_027690, intron 1 of 11) intron (NR_027690, intron 1 of 11) 9924 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 401-90 chr14 58966786 58967026 + 3 NA intron (NR_110547, intron 4 of 5) LTR41C|LTR|ERVL 138618 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 529-128 chr20 16925640 16925861 + 3 NA Intergenic Intergenic 177397 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 1051-15 chr6 76096313 76096917 + 3 NA Intergenic L1PA14|LINE|L1 -23937 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 437-92 chr15 101846505 101846706 + 3 NA intron (NR_046417, intron 3 of 4) MER2|DNA|TcMar-Tigger 4486 NR_046417 390651 Hs.578689 NR_046417 ENSG00000214344 OR4F13P GPCRLTM7 olfactory receptor family 4 subfamily F member 13 pseudogene pseudo 419-42 chr10 113511671 113511844 + 3 NA Intergenic L1MB7|LINE|L1 -39074 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 593-51 chr16 48875208 48875601 + 3 NA Intergenic MIRb|SINE|MIR -265224 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 395-75 chr12 88567913 88568108 + 3 NA intron (NM_000899, intron 1 of 9) intron (NM_000899, intron 1 of 9) 12461 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 537-195 chr5 58466200 58466421 + 3 NA Intergenic MIR|SINE|MIR -6171 NM_001252226 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 839-41 chr5 120406881 120407270 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -57203 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 370-115 chr12 61643430 61643572 + 3 NA Intergenic MIRb|SINE|MIR 549338 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 617-102 chr5 8361893 8362311 + 3 NA intron (NR_039984, intron 3 of 5) intron (NR_039984, intron 3 of 5) 95462 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 497-186 chr3 167614231 167614454 + 3 NA intron (NM_001366158, intron 2 of 15) AluSx1|SINE|Alu 39600 NM_001366157 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 1152 chr10 23134536 23135275 + 3 NA Intergenic L1MC5|LINE|L1 39326 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 609-69 chr20 57974110 57974344 + 3 NA Intergenic Intergenic -29677 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 734-65 chr5 150923046 150923426 + 3 NA Intergenic L1MDa|LINE|L1 -18253 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1214-7 chr5 152315294 152315850 + 3 NA Intergenic MIR3|SINE|MIR 89707 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 412-290 chr6 155822642 155822865 + 3 NA Intergenic MLT2B2|LTR|ERVL -124044 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 629-2 chr1 59799923 59800205 + 3 NA Intergenic L1M4|LINE|L1 -14885 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 693-112 chr9 107071442 107071805 + 3 NA intron (NR_126029, intron 3 of 4) intron (NR_126029, intron 3 of 4) 31365 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 342-289 chr20 45162667 45162849 + 3 NA Intergenic L1M3|LINE|L1 -12144 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 966-28 chr8 110796822 110797402 + 3 NA Intergenic Intergenic 230321 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 277-215 chr2 231764759 231764890 + 3 NA intron (NM_002601, intron 1 of 4) L2c|LINE|L2 16458 NR_110994 5147 Hs.516808 NM_002601 ENSG00000156973 PDE6D JBTS22|PDED phosphodiesterase 6D protein-coding 504-108 chr18 47398337 47398546 + 3 NA intron (NR_147192, intron 1 of 2) MER81|DNA|hAT-Blackjack 17945 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 653-5 chr1 112185619 112186054 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie 195300 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 517-67 chr13 76731716 76731949 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 154573 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 536-23 chr1 225091496 225091850 + 3 NA intron (NM_001367479, intron 21 of 85) L1PA15|LINE|L1 161998 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 221-46 chr10 127623907 127623999 + 3 NA Intergenic L1M6|LINE|L1 74604 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 404-260 chr5 116865560 116865705 + 3 NA Intergenic LTR49|LTR|ERV1 -103423 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 234-393 chr8 123490687 123490810 + 3 NA Intergenic Intergenic 41395 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 655-84 chr4 28815456 28815832 + 3 NA Intergenic L1MA6|LINE|L1 -3938 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 1268 chr11 25359531 25360455 + 3 NA Intergenic Intergenic -829130 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 276-221 chr2 45382436 45382565 + 3 NA Intergenic Intergenic -127559 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 514-98 chr15 39210897 39211195 + 3 NA Intergenic Intergenic -39623 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 162-131 chr8 84041984 84042073 + 3 NA Intergenic L1ME1|LINE|L1 -140759 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 700-9 chr10 52869573 52870062 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -98117 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 253-167 chr18 77365070 77365168 + 3 NA Intergenic Intergenic 115271 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 390-55 chr11 36920184 36920392 + 3 NA Intergenic Intergenic -322009 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 588-87 chr20 55708926 55709290 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -281911 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 481-147 chr2 80361517 80361744 + 3 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 48251 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 617-26 chr12 73985648 73985995 + 3 NA Intergenic L1MB4|LINE|L1 306810 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 517-90 chr16 3666815 3667027 + 3 NA intron (NM_001272049, intron 10 of 16) intron (NM_001272049, intron 10 of 16) 12217 NM_001351825 1773 Hs.629638 NM_005223 ENSG00000213918 DNASE1 DNL1|DRNI deoxyribonuclease 1 protein-coding 478-2 chr1 45259053 45259248 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -44760 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 728-55 chr20 19040821 19041186 + 3 NA Intergenic L1MEj|LINE|L1 -171639 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 534-100 chr18 75179887 75180198 + 3 NA Intergenic Kanga1a|DNA|TcMar-Tc2 25471 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 276-376 chr5 99308764 99308925 + 3 NA Intergenic Charlie25|DNA|hAT-Charlie -225146 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 518-261 chr6 140467463 140467703 + 3 NA Intergenic L1MEc|LINE|L1 -216231 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 466-128 chr2 79419058 79419294 + 3 NA Intergenic MIRc|SINE|MIR 81668 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 371-280 chr4 68223323 68223556 + 3 NA Intergenic L2b|LINE|L2 -5359 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 519-222 chr7 147217359 147217577 + 3 NA intron (NM_014141, intron 7 of 22) L1MC1|LINE|L1 -119859 NR_110829 101928700 Hs.571218 NR_110829 ENSG00000236795 LOC101928700 - uncharacterized LOC101928700 ncRNA 307-54 chr10 55243101 55243283 + 3 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -355850 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 399-130 chr19 56416295 56416474 + 3 NA intron (NM_001159860, intron 4 of 4) L1M5|LINE|L1 12052 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 1158-7 chr3 59458315 59458828 + 3 NA Intergenic Intergenic 199926 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 379-99 chr14 98196651 98196839 + 3 NA Intergenic Intergenic -218621 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 745-26 chr2 14003001 14003324 + 3 NA Intergenic L1MA9|LINE|L1 397796 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 570-208 chr9 74075016 74075305 + 3 NA Intergenic L1M3|LINE|L1 -296371 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 757-10 chr12 13543606 13544032 + 3 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -167074 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 398-272 chr5 66519266 66519478 + 3 NA Intergenic L1MEg|LINE|L1 -7768 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 342-232 chr2 51902343 51902496 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -468229 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 370-188 chr18 4215145 4215310 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -49375 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 511-66 chr14 66833413 66833709 + 3 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) 326154 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 475-300 chr9 111263615 111263929 + 3 NA Intergenic Intergenic 7442 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 473-39 chr10 111648188 111648440 + 3 NA Intergenic Intergenic 534023 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 435-187 chr5 19284754 19284933 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 601429 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 630-129 chr7 62802679 62803013 + 3 NA Intergenic ALR/Alpha|Satellite|centr 501210 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 514-134 chr19 31757001 31757280 + 3 NA Intergenic L1M5|LINE|L1 164859 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 749-40 chr17 19948648 19949181 + 3 NA intron (NM_007202, intron 4 of 14) L1MDb|LINE|L1 28914 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 849-52 chr9 133004786 133005354 + 3 NA Intergenic Intergenic -15360 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 382-354 chr6 61792346 61792477 + 3 NA intron (NR_146874, intron 6 of 13) L1MEd|LINE|L1 218281 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 546-206 chr6 39579437 39579835 + 3 NA intron (NM_001289020, intron 9 of 21) L1ME3Cz|LINE|L1 145772 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 481-55 chr11 76230628 76230960 + 3 NA Intergenic Intergenic -24292 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 523-65 chr12 34663241 34663469 + 3 NA Intergenic ALR/Alpha|Satellite|centr 640859 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 406-316 chr9 132724543 132724707 + 3 NA TTS (NM_152572) TTS (NM_152572) 54161 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 465-282 chr8 33945446 33945667 + 3 NA Intergenic MER20|DNA|hAT-Charlie -345450 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 691-91 chr8 136660145 136660442 + 3 NA intron (NR_147196, intron 2 of 5) L1MD1|LINE|L1 129495 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 813-30 chr5 1844513 1845052 + 3 NA Intergenic (TATATC)n|Simple_repeat|Simple_repeat 11786 NR_104602 101929034 Hs.128032 NR_104602 ENSG00000250417 LINC02116 - long intergenic non-protein coding RNA 2116 ncRNA 585-176 chrX 78662370 78662684 + 3 NA Intergenic Intergenic -3199 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 667-41 chr18 37769184 37769620 + 3 NA Intergenic MIR|SINE|MIR 112267 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 727-86 chr9 27092032 27092428 + 3 NA Intergenic Intergenic -16911 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 569-85 chr2 2926007 2926316 + 3 NA intron (NR_110228, intron 5 of 6) MLT1B|LTR|ERVL-MaLR 199865 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 708-68 chr6 40242788 40243161 + 3 NA Intergenic LTR33|LTR|ERVL 113032 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 290-338 chr5 39027407 39027592 + 3 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 46900 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 967-9 chr17 71056701 71057242 + 3 NA Intergenic Intergenic 145208 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 533-27 chr11 85471035 85471292 + 3 NA intron (NM_001142699, intron 3 of 27) LTR40A1|LTR|ERVL 156107 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 459-201 chr4 15172313 15172496 + 3 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) -167584 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 436-94 chr15 95443800 95443990 + 3 NA intron (NR_027133, intron 1 of 5) LTR78B|LTR|ERV1 10802 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 371-128 chr16 47292938 47293077 + 3 NA intron (NM_030790, intron 10 of 17) L1PB4|LINE|L1 148939 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 1317-9 chr7 93405632 93406153 + 3 NA Intergenic L1M2|LINE|L1 76963 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 611-79 chr2 102547599 102547846 + 3 NA Intergenic Intergenic -71831 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 629-91 chr4 130925916 130926312 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 549753 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 624-90 chr4 77342103 77342523 + 3 NA Intergenic LTR10B2|LTR|ERV1 -169440 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 880-20 chr2 51954377 51954801 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -416059 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 487-49 chr10 117848990 117849219 + 3 NA Intergenic MIRb|SINE|MIR -197717 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 743-85 chr8 120852340 120852862 + 3 NA Intergenic Intergenic -40555 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 773-34 chr4 125383457 125383944 + 3 NA intron (NM_001291303, intron 1 of 16) Tigger1|DNA|TcMar-Tigger 67288 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 494-186 chr3 131866905 131867159 + 3 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 118899 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 476-58 chr12 2405042 2405211 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 135350 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 421-252 chr5 162557594 162557845 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 490077 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 760-69 chr7 33263177 33263594 + 3 NA intron (NM_198428, intron 6 of 22) intron (NM_198428, intron 6 of 22) 133821 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 212-52 chr10 123090539 123090652 + 3 NA Intergenic Intergenic -45375 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 549-210 chr8 81305794 81306126 + 3 NA Intergenic Intergenic 25424 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 536-24 chr1 227644969 227645276 + 3 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 52585 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 416-27 chr1 247162053 247162266 + 3 NA intron (NM_003431, intron 1 of 3) L1PA14|LINE|L1 9858 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 369-405 chr8 71002678 71002882 + 3 NA Intergenic Intergenic 333441 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 463-65 chr12 26416004 26416258 + 3 NA intron (NM_002223, intron 50 of 56) intron (NM_002223, intron 50 of 56) 220558 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 367-275 chr3 32214206 32214438 + 3 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat -24357 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 640-117 chr6 69880285 69880608 + 3 NA intron (NM_001858, intron 2 of 50) intron (NM_001858, intron 2 of 50) 13890 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 813-37 chr6 143298300 143298807 + 3 NA intron (NM_016108, intron 4 of 5) AluJo|SINE|Alu 133771 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 313-215 chr18 47429070 47429248 + 3 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 48663 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 648-144 chr8 62256578 62256815 + 3 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 7842 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 375-329 chr5 105867096 105867287 + 3 NA Intergenic L1PBb|LINE|L1 767717 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 578-110 chr3 42334603 42334874 + 3 NA Intergenic L1ME4a|LINE|L1 -68553 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 644-65 chr3 127284093 127284425 + 3 NA exon (NM_001362810, exon 3 of 3) exon (NM_001362810, exon 3 of 3) 3787 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 882-35 chr4 103246095 103246497 + 3 NA Intergenic Intergenic -47953 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 651-79 chr22 29923731 29924076 + 3 NA intron (NM_153051, intron 1 of 18) L1M3|LINE|L1 40729 NM_153051 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 273-88 chr11 114295610 114295809 + 3 NA promoter-TSS (NM_006169) promoter-TSS (NM_006169) -104 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 445-120 chr2 60352109 60352322 + 3 NA Intergenic Intergenic 30821 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 521-228 chr7 41189230 41189460 + 3 NA Intergenic Intergenic 87741 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 399-106 chr16 17804900 17805104 + 3 NA Intergenic Intergenic -334042 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 519-183 chr5 106206572 106206881 + 3 NA Intergenic Intergenic 804288 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 837-32 chr4 36527118 36527529 + 3 NA intron (NR_149124, intron 3 of 4) L1MA4|LINE|L1 -100895 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 821-55 chr8 122934830 122935256 + 3 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 90729 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 446-197 chr3 115941938 115942107 + 3 NA intron (NM_001318915, intron 3 of 8) (TTATT)n|Simple_repeat|Simple_repeat -36896 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 355-529 chr9 9937176 9937295 + 3 NA intron (NM_002839, intron 5 of 45) (AAAATAA)n|Simple_repeat|Simple_repeat 137843 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 590-12 chr1 227606986 227607203 + 3 NA intron (NR_102302, intron 2 of 5) L1MB7|LINE|L1 43538 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 625-113 chr8 94762088 94762296 + 3 NA intron (NM_181787, intron 8 of 18) LTR50|LTR|ERVL 42292 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 681-76 chr6 145236657 145237049 + 3 NA Intergenic MER3|DNA|hAT-Charlie 450024 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 618-145 chrX 123004244 123004584 + 3 NA Intergenic LTR16B|LTR|ERVL -179829 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 966-25 chr6 125459706 125460423 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -158097 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 1218-5 chr5 144819066 144819770 + 3 NA Intergenic AluSx3|SINE|Alu 614027 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 794-42 chr8 68784878 68785264 + 3 NA intron (NR_146187, intron 11 of 13) AluJb|SINE|Alu 319119 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 725-50 chr5 110797449 110797741 + 3 NA Intergenic L1PB1|LINE|L1 58588 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 319-298 chr21 14844898 14845040 + 3 NA intron (NR_146322, intron 2 of 3) MER92-int|LTR|ERV1 73699 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 547-180 chr5 41681359 41681614 + 3 NA Intergenic L2|LINE|L2 162171 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 526-45 chr11 79958178 79958481 + 3 NA Intergenic Intergenic -517299 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 616-27 chr12 7073586 7073930 + 3 NA Intergenic L1MC4a|LINE|L1 13040 NM_001346850 716 Hs.458355 NM_001734 ENSG00000182326 C1S EDSPD2 complement C1s protein-coding 438-76 chr14 66436956 66437139 + 3 NA Intergenic L1MEc|LINE|L1 -49324 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 851-20 chr2 81225520 81225922 + 3 NA Intergenic Intergenic 241225 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 399-336 chrX 39365279 39365473 + 3 NA Intergenic Intergenic 26398 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 447-162 chr3 19642199 19642387 + 3 NA Intergenic Intergenic 291924 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 493-275 chr7 50520399 50520706 + 3 NA intron (NM_001242889, intron 4 of 12) L1MC2|LINE|L1 -11207 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 352-557 chr9 25129056 25129204 + 3 NA Intergenic Intergenic 549728 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 419-34 chr10 76428475 76428692 + 3 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -459461 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 347-215 chr2 56945498 56945727 + 3 NA Intergenic Intergenic -759842 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1037-13 chr5 93496748 93497364 + 3 NA intron (NR_109825, intron 5 of 8) intron (NR_109825, intron 5 of 8) 74287 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 304-359 chr3 160948204 160948361 + 3 NA intron (NM_001317912, intron 2 of 4) intron (NM_001317912, intron 2 of 4) 77684 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 295-220 chr2 115225531 115225683 + 3 NA intron (NM_001321906, intron 2 of 26) L2a|LINE|L2 63452 NM_001004360 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 485-41 chr11 13062576 13062837 + 3 NA Intergenic L2|LINE|L2 53390 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 441-239 chr7 12822507 12822795 + 3 NA Intergenic L1PA14|LINE|L1 135018 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 412-131 chr18 7446611 7446822 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie 14290 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 641-87 chr4 83614505 83614757 + 3 NA Intergenic L1MA5|LINE|L1 78523 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 638-118 chr5 35546206 35546602 + 3 NA Intergenic Intergenic -71459 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 661-60 chr22 28542187 28542582 + 3 NA intron (NM_001145418, intron 2 of 22) L1MEc|LINE|L1 82515 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 553-70 chr15 60978260 60978595 + 3 NA intron (NM_134261, intron 1 of 10) L1MB7|LINE|L1 250875 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 379-15 chr1 95982692 95982851 + 3 NA Intergenic L2a|LINE|L2 -9297 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 620-110 chr5 51918393 51918790 + 3 NA Intergenic Intergenic -89440 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 519-189 chr5 179096762 179096952 + 3 NA Intergenic L1M3a|LINE|L1 36484 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 655-2 chr1 57126846 57127281 + 3 NA intron (NM_001365793, intron 4 of 14) intron (NM_001365793, intron 4 of 14) -160923 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 432-215 chr5 13150051 13150275 + 3 NA Intergenic Intergenic -117277 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 863-42 chr7 49315374 49315752 + 3 NA Intergenic L1MD2|LINE|L1 391016 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 459-111 chr17 66215202 66215460 + 3 NA intron (NM_000042, intron 6 of 7) MER5A|DNA|hAT-Charlie 14084 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 595-161 chr8 82194461 82194880 + 3 NA Intergenic Intergenic -352384 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 428-300 chr8 84341356 84341560 + 3 NA intron (NM_001354320, intron 2 of 9) MIRb|SINE|MIR -74026 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 347-243 chr2 135333910 135334058 + 3 NA intron (NM_001286569, intron 6 of 21) intron (NM_001286569, intron 6 of 21) 196601 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 375-210 chr2 73945004 73945195 + 3 NA intron (NM_080918, intron 2 of 4) L2b|LINE|L2 18219 NM_001318860 1716 Hs.469022 NM_001929 ENSG00000114956 DGUOK MTDPS3|NCPH|PEOB4|dGK deoxyguanosine kinase protein-coding 400-29 chr10 29164341 29164508 + 3 NA Intergenic Intergenic -124646 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 615-136 chr8 56935176 56935407 + 3 NA Intergenic Intergenic 58576 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 644-113 chrX 63797026 63797322 + 3 NA Intergenic Intergenic -11087 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 370-176 chr17 13154019 13154211 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -136051 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 571-127 chr5 4247481 4247767 + 3 NA Intergenic L1MC5a|LINE|L1 -525857 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 579-146 chr6 162802595 162802921 + 3 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 74788 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 791-47 chr3 89909979 89910447 + 3 NA Intergenic AluJb|SINE|Alu 802592 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 659-19 chr11 109916631 109917009 + 3 NA Intergenic L2a|LINE|L2 -176572 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 343-470 chr6 70258380 70258539 + 3 NA intron (NM_001851, intron 20 of 37) intron (NM_001851, intron 20 of 37) 24738 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 511-162 chr22 34876198 34876441 + 3 NA intron (NR_138042, intron 3 of 4) MIRb|SINE|MIR 121597 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 820-14 chr13 36723875 36724353 + 3 NA Intergenic Intergenic 50094 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 518-56 chr11 82628871 82629110 + 3 NA Intergenic LTR12F|LTR|ERV1 104874 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 462-199 chr4 43010685 43010949 + 3 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 117551 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 609-3 chr1 94116517 94116860 + 3 NA intron (NM_000350, intron 1 of 49) intron (NM_000350, intron 1 of 49) 4460 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 1241-4 chr2 225768877 225769402 + 3 NA Intergenic Intergenic 368253 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 272-58 chr10 83232663 83232834 + 3 NA Intergenic L1M5|LINE|L1 444341 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 627-126 chr9 102758986 102759264 + 3 NA Intergenic Intergenic -236208 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 868-33 chr5 150883461 150883808 + 3 NA intron (NM_001346557, intron 3 of 3) L1M1|LINE|L1 21349 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 343-206 chr18 71018262 71018473 + 3 NA Intergenic L2a|LINE|L2 -367413 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 225-271 chr5 27065561 27065703 + 3 NA Intergenic Intergenic -27046 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 470-271 chr8 110351122 110351329 + 3 NA Intergenic L1MEc|LINE|L1 -375454 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 573-35 chr11 24672681 24673006 + 3 NA intron (NM_001252008, intron 1 of 11) MER1B|DNA|hAT-Charlie 175790 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 509-67 chr13 71053131 71053389 + 3 NA intron (NR_047699, intron 1 of 3) L1MA4A|LINE|L1 38119 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 327-200 chr17 66620710 66620929 + 3 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -166253 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 638-78 chr22 43751672 43752090 + 3 NA intron (NM_198856, intron 4 of 29) MIR|SINE|MIR 60424 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 440-75 chr15 24651612 24651868 + 3 NA Intergenic L1MA4|LINE|L1 -23654 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 609-73 chr21 38196439 38196860 + 3 NA Intergenic Intergenic -9507 NR_027695 259234 Hs.147695 NM_148676 ENSG00000233316 DSCR10 - Down syndrome critical region 10 ncRNA 660-115 chr9 24536963 24537359 + 3 NA Intergenic Intergenic 8515 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 689-3 chr1 116310111 116310615 + 3 NA Intergenic MamRTE1|LINE|RTE-BovB -62881 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 764-54 chr4 79772478 79772823 + 3 NA Intergenic L1PB1|LINE|L1 -54821 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 701-71 chr4 115787512 115787879 + 3 NA Intergenic L1MB3|LINE|L1 -512030 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 580-180 chr7 46382062 46382383 + 3 NA Intergenic L1M5|LINE|L1 314900 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 599-99 chr4 83806283 83806591 + 3 NA Intergenic (AATAA)n|Simple_repeat|Simple_repeat 270329 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 1181-18 chr9 96814335 96814930 + 3 NA Intergenic AluJr|SINE|Alu -36503 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 813-4 chr10 118776328 118776916 + 3 NA Intergenic Intergenic -21652 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 456-166 chr2 152847790 152848087 + 3 NA Intergenic L1PB3|LINE|L1 129301 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 1058-10 chr17 9885423 9885998 + 3 NA intron (NM_004246, intron 11 of 12) MLT1G1|LTR|ERVL-MaLR 19561 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 250-148 chr16 64616488 64616645 + 3 NA Intergenic Intergenic 505497 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 345-22 chr1 162024661 162024890 + 3 NA promoter-TSS (NM_001297713) promoter-TSS (NM_001297713) -310 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 532-287 chr9 117598051 117598279 + 3 NA Intergenic L1MA5|LINE|L1 -50441 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 464-265 chr8 142841116 142841300 + 3 NA exon (NM_002066, exon 3 of 4) exon (NM_002066, exon 3 of 4) 6407 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 422-187 chr3 75046927 75047092 + 3 NA Intergenic L2a|LINE|L2 -167467 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 498-211 chr5 43680677 43680956 + 3 NA intron (NM_012343, intron 19 of 21) intron (NM_012343, intron 19 of 21) -77586 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 1097-6 chr2 35990706 35991309 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 364563 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 498-217 chr5 63861487 63861781 + 3 NA Intergenic L1M4|LINE|L1 100658 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 624-103 chr5 143320188 143320501 + 3 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 82939 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 489-180 chr3 160018122 160018399 + 3 NA intron (NR_108088, intron 4 of 9) intron (NR_108088, intron 4 of 9) -2389 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 836-40 chr3 194290167 194290689 + 3 NA Intergenic L1MD2|LINE|L1 22376 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 781-16 chr14 19867479 19867975 + 3 NA TTS (NM_001348266) TTS (NM_001348266) 1446 NR_145507 283617 NM_001348266 ENSG00000176290 OR4K3 OR14-10|OR4K3P olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding 150-14 chr10 73313949 73314042 + 3 NA intron (NM_001367801, intron 10 of 27) intron (NM_001367801, intron 10 of 27) 44759 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 647-91 chr7 8517554 8517769 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 84052 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 809-12 chr14 88080580 88081051 + 3 NA intron (NR_046094, intron 2 of 3) intron (NR_046094, intron 2 of 3) -54503 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 503-271 chr7 111451877 111452047 + 3 NA intron (NM_001350961, intron 4 of 7) intron (NM_001350961, intron 4 of 7) 110329 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 453-136 chr2 216347621 216347787 + 3 NA intron (NM_020814, intron 1 of 3) AluSg7|SINE|Alu 24779 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 379-272 chr5 100299230 100299421 + 3 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR 88929 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 470-85 chr15 91565896 91566073 + 3 NA Intergenic Intergenic 102645 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 591-121 chr5 6874526 6874800 + 3 NA Intergenic L1M5|LINE|L1 -46742 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 876-18 chr19 12311550 12312076 + 3 NA Intergenic AluSq|SINE|Alu -16914 NM_001353553 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 509-111 chr2 65471715 65471969 + 3 NA Intergenic AluJr4|SINE|Alu -39243 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 581-66 chr18 22359409 22359651 + 3 NA Intergenic Intergenic 58385 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 175-81 chr2 136888449 136888555 + 3 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 122957 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 335-271 chr2 163271535 163271711 + 3 NA Intergenic L1ME1|LINE|L1 -432856 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 431-78 chr14 47081303 47081482 + 3 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 261854 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 492-190 chr4 82513457 82513672 + 3 NA intron (NM_001353454, intron 1 of 7) intron (NM_001353454, intron 1 of 7) 48424 NM_001080506 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 568-172 chr6 91404292 91404669 + 3 NA Intergenic L1PBa1|LINE|L1 -117180 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 427-135 chr20 16188735 16188929 + 3 NA Intergenic Intergenic -202950 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 886-34 chr8 16234609 16235057 + 3 NA Intergenic LTR16B2|LTR|ERVL -42042 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 733-22 chr17 5803203 5803520 + 3 NA intron (NR_040000, intron 1 of 3) L1ME3G|LINE|L1 31127 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 759-15 chr11 79003659 79004051 + 3 NA intron (NM_001098816, intron 6 of 33) L1PA13|LINE|L1 398254 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 531-193 chr5 26509869 26510183 + 3 NA Intergenic L1PREC2|LINE|L1 528560 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 302-43 chr10 34618508 34618692 + 3 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 196696 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 731-79 chr9 102809739 102810109 + 3 NA Intergenic HERVL-int|LTR|ERVL -185409 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 335-378 chr4 31588322 31588502 + 3 NA Intergenic Intergenic 81868 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 350-149 chr14 97517204 97517474 + 3 NA intron (NR_110166, intron 2 of 4) intron (NR_110166, intron 2 of 4) 58523 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 578-6 chr1 71317728 71317960 + 3 NA Intergenic L1MC1|LINE|L1 236520 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 488-180 chr3 148641237 148641541 + 3 NA Intergenic Intergenic -56482 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 409-160 chr2 213263303 213263593 + 3 NA Intergenic Tigger15a|DNA|TcMar-Tigger 20761 NR_144752 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 438-61 chr11 129537495 129537651 + 3 NA Intergenic Intergenic 79696 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 411-242 chr5 158623733 158623903 + 3 NA Intergenic Intergenic -214045 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 324-264 chr2 77012855 77013044 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 26984 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 529-6 chr1 186231073 186231292 + 3 NA Intergenic AluJr|SINE|Alu -65091 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 779-35 chr20 46456810 46457356 + 3 NA non-coding (NR_045983, exon 1 of 1) non-coding (NR_045983, exon 1 of 1) 560 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 690-82 chr5 28600797 28601222 + 3 NA Intergenic MER31A|LTR|ERV1 -313344 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 321-174 chr14 67511793 67511953 + 3 NA intron (NM_001348549, intron 1 of 3) intron (NM_001348549, intron 1 of 3) 3342 NM_001348544 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 378-375 chr6 64816819 64816977 + 3 NA intron (NM_001292009, intron 21 of 43) L1MC|LINE|L1 -484520 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 521-129 chr2 167955996 167956181 + 3 NA intron (NM_013233, intron 17 of 17) intron (NM_013233, intron 17 of 17) -14944 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 921-12 chr2 51100125 51100700 + 3 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 67811 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 590-27 chr11 114109396 114109608 + 3 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 46291 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 240-102 chr12 21040796 21040909 + 3 NA intron (NM_001009562, intron 5 of 12) L1MA1|LINE|L1 25156 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 830-57 chr8 133105897 133106458 + 3 NA intron (NM_003235, intron 43 of 47) intron (NM_003235, intron 43 of 47) -3575 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 444-57 chr12 112919860 112920111 + 3 NA TTS (NM_016816) TTS (NM_016816) 13023 NM_016816 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 543-160 chr21 29287864 29288128 + 3 NA non-coding (NR_027072, exon 2 of 2) non-coding (NR_027072, exon 2 of 2) -10926 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 891-14 chr14 72780164 72780778 + 3 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 112178 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 488-95 chr16 34583647 34583871 + 3 NA Intergenic Intergenic -202279 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 741-53 chr5 46395185 46395581 + 3 NA Intergenic ALR/Alpha|Satellite|centr -699003 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 337-403 chr4 91823820 91824037 + 3 NA Intergenic (AGTAT)n|Simple_repeat|Simple_repeat 453374 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 522-184 chr3 194301271 194301581 + 3 NA non-coding (NR_024480, exon 3 of 3) non-coding (NR_024480, exon 3 of 3) 11378 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 721-53 chr22 34628644 34629178 + 3 NA Intergenic HAL1|LINE|L1 369005 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1040-19 chr8 131654262 131654870 + 3 NA Intergenic L1M4|LINE|L1 -249527 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 567-135 chr4 141570693 141570985 + 3 NA Intergenic L1ME4a|LINE|L1 -65744 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 503-113 chr16 55355608 55355792 + 3 NA Intergenic L1MC4a|LINE|L1 31141 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 479-211 chr6 18073837 18074038 + 3 NA Intergenic AluJb|SINE|Alu 48740 NM_198586 378884 Hs.348351 NM_198586 ENSG00000187566 NHLRC1 EPM2A|EPM2B|MALIN|bA204B7.2 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding 708-33 chr16 10297199 10297470 + 3 NA Intergenic LTR2|LTR|ERV1 -88727 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 406-47 chr11 30953421 30953566 + 3 NA intron (NM_001367979, intron 20 of 38) L1MEd|LINE|L1 39193 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 661-25 chr14 87138731 87139069 + 3 NA Intergenic L1ME2|LINE|L1 233122 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 303-416 chr7 18420400 18420586 + 3 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -75217 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 519-152 chr3 186962715 186963044 + 3 NA intron (NM_173216, intron 1 of 7) L1M5|LINE|L1 32353 NM_173217 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 358-170 chr18 68751046 68751251 + 3 NA intron (NM_001093729, intron 3 of 9) Tigger17a|DNA|TcMar-Tigger 35932 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 339-627 chrX 80309754 80309914 + 3 NA intron (NR_110646, intron 2 of 5) MamRTE1|LINE|RTE-BovB 25484 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 511-180 chr3 172969567 172969776 + 3 NA intron (NM_031955, intron 5 of 10) intron (NM_031955, intron 5 of 10) 171564 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 540-54 chr12 55614733 55614924 + 3 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -22064 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 517-236 chr6 63340089 63340377 + 3 NA Intergenic L1M2|LINE|L1 -20250 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 299-237 chr2 182097222 182097423 + 3 NA intron (NM_001261425, intron 4 of 5) LTR82B|LTR|ERVL 111469 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 637-95 chr5 118047279 118047669 + 3 NA intron (NR_104997, intron 2 of 2) L1ME1|LINE|L1 -235100 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 434-189 chr3 99618302 99618506 + 3 NA Intergenic Intergenic -20190 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 447-121 chr2 32762949 32763131 + 3 NA intron (NM_017735, intron 13 of 19) intron (NM_017735, intron 13 of 19) -62393 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 477-203 chr3 81127783 81127967 + 3 NA Intergenic L1M2|LINE|L1 134007 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 431-274 chr7 99120202 99120451 + 3 NA intron (NM_020429, intron 1 of 18) intron (NM_020429, intron 1 of 18) 23782 NM_181349 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 938-5 chr12 60321734 60322164 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 632579 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 825-13 chr16 62459654 62460077 + 3 NA Intergenic L1PA13|LINE|L1 -423427 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 667-96 chr6 14969277 14969698 + 3 NA Intergenic MER34A|LTR|ERV1 -276582 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 570-32 chr10 109823410 109823681 + 3 NA Intergenic LTR43|LTR|ERV1 99701 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 521-164 chr3 108145782 108146070 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 20105 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 634-59 chr14 73169056 73169537 + 3 NA intron (NM_000021, intron 3 of 11) intron (NM_000021, intron 3 of 11) 32789 NM_000021 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 634-22 chr10 97555245 97555466 + 3 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) -17086 NM_001291218 26287 Hs.73708 NM_020349 ENSG00000165887 ANKRD2 ARPP ankyrin repeat domain 2 protein-coding 644-73 chr5 7092123 7092425 + 3 NA Intergenic Intergenic 177080 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 535-39 chr11 29009757 29010019 + 3 NA Intergenic L1PA15|LINE|L1 -532340 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 643-30 chr14 39842930 39843406 + 3 NA Intergenic Intergenic -410668 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 646-127 chr8 99955627 99955913 + 3 NA Intergenic Intergenic -48812 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 524-56 chr13 80659420 80659664 + 3 NA Intergenic L1PB3|LINE|L1 -318416 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 480-186 chr3 34548536 34548834 + 3 NA Intergenic Intergenic 750055 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 433-211 chr4 159858919 159859129 + 3 NA Intergenic L3b|LINE|CR1 -81240 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 488-252 chr6 169534924 169535157 + 3 NA intron (NR_146875, intron 19 of 20) MIRc|SINE|MIR 166989 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 259-387 chr8 74638156 74638294 + 3 NA intron (NR_033830, intron 2 of 5) intron (NR_033830, intron 2 of 5) 38359 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 481-146 chr2 80171964 80172229 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 132656 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 530-103 chr18 13313078 13313435 + 3 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 35151 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 355-34 chr10 15705053 15705326 + 3 NA intron (NM_001291494, intron 2 of 28) intron (NM_001291494, intron 2 of 28) 14733 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 1064-10 chr3 4911665 4912321 + 3 NA intron (NR_125916, intron 1 of 2) intron (NR_125916, intron 1 of 2) -5492 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 453-86 chr16 78650138 78650414 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 550622 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 534-153 chr22 32467846 32468188 + 3 NA Intergenic MER113|DNA|hAT-Charlie -6794 NM_012179 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 396-89 chr12 59169245 59169460 + 3 NA Intergenic MIR|SINE|MIR -248814 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 248-222 chr20 45713595 45713772 + 3 NA Intergenic L1M5|LINE|L1 -8503 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 344-518 chr9 33991471 33991728 + 3 NA intron (NR_163243, intron 3 of 24) intron (NR_163243, intron 3 of 24) -38745 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 377-384 chr7 116663348 116663521 + 3 NA Intergenic Intergenic -8762 NM_000245 4233 Hs.132966 NM_000245 ENSG00000105976 MET AUTS9|DFNB97|HGFR|RCCP2|c-Met MET proto-oncogene, receptor tyrosine kinase protein-coding 401-315 chr8 64191397 64191546 + 3 NA intron (NR_125826, intron 1 of 4) L1MA9|LINE|L1 177087 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 997 chr1 62579950 62580587 + 3 NA intron (NM_001367561, intron 16 of 49) intron (NM_001367561, intron 16 of 49) -17252 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 320-338 chr3 30369842 30370007 + 3 NA Intergenic Intergenic -148944 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 530-220 chr6 146824635 146824930 + 3 NA Intergenic LTR8B|LTR|ERV1 -20958 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 563-83 chr19 56487577 56487849 + 3 NA intron (NR_036521, intron 1 of 1) intron (NR_036521, intron 1 of 1) 9589 NR_036522 100128252 Hs.23133 NM_198879 ENSG00000166770 ZNF667-AS1 MORT ZNF667 antisense RNA 1 (head to head) ncRNA 872-28 chr2 199010091 199010487 + 3 NA Intergenic L1PA7|LINE|L1 447650 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 758-26 chr15 27177584 27178122 + 3 NA intron (NM_001270873, intron 3 of 5) MER31A|LTR|ERV1 -16534 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 465-6 chr1 67199647 67199918 + 3 NA intron (NM_144701, intron 4 of 10) ORSL|DNA|hAT-Tip100 33328 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 261-397 chr8 137668776 137668925 + 3 NA Intergenic Intergenic -255262 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 477-118 chr17 54637988 54638232 + 3 NA Intergenic L1M1|LINE|L1 -262581 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 469-143 chr2 126057997 126058247 + 3 NA Intergenic L1PB4|LINE|L1 59863 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 450-85 chr14 66300770 66300989 + 3 NA Intergenic Intergenic -185492 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 501-42 chr12 2089942 2090192 + 3 NA intron (NM_199460, intron 1 of 49).2 L1MB2|LINE|L1 36782 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 693-66 chr21 30680469 30680802 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 37771 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 906-18 chr13 86663913 86664289 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -247819 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 555-17 chr10 31630178 31630492 + 3 NA Intergenic L1MB3|LINE|L1 -230580 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 353-33 chr1 185904423 185904588 + 3 NA intron (NM_031935, intron 4 of 106) intron (NM_031935, intron 4 of 106) 170114 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 656-35 chr12 79564748 79565178 + 3 NA Intergenic LTR12C|LTR|ERV1 125617 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 369-206 chr2 113980265 113980464 + 3 NA promoter-TSS (NR_034130) promoter-TSS (NR_034130) -380 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 341-191 chr16 78299738 78299885 + 3 NA intron (NM_001291997, intron 4 of 7) AluJb|SINE|Alu 200157 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 679-65 chr20 56294772 56295109 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 46208 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 569-106 chr2 185195166 185195374 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger -28198 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 685-74 chr4 91262396 91262900 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 1014654 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 848-28 chr21 27550609 27551154 + 3 NA Intergenic Intergenic -171498 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 685-26 chr15 46675207 46675541 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie -508715 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 411-310 chr9 80790838 80791025 + 3 NA Intergenic Intergenic 815908 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 435-37 chr10 76247365 76247550 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 464696 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 802-72 chr9 28548749 28549228 + 3 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 170317 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 898-15 chr17 38983340 38983709 + 3 NA Intergenic AluSq2|SINE|Alu -16121 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 785-22 chr17 53902451 53902796 + 3 NA Intergenic L1PA7|LINE|L1 79696 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 318-458 chr5 134711171 134711301 + 3 NA intron (NM_021982, intron 18 of 22) AluJr|SINE|Alu -27312 NM_001745 819 Hs.529846 NM_001745 ENSG00000164615 CAMLG CAML|GET2 calcium modulating ligand protein-coding 495-237 chr7 52578571 52578885 + 3 NA Intergenic L1M4|LINE|L1 -456905 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 345-298 chr2 192779921 192780062 + 3 NA Intergenic Intergenic 30146 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 505-288 chr7 70249074 70249339 + 3 NA intron (NM_015570, intron 4 of 18) L1ME3D|LINE|L1 650731 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 852-26 chr2 34318443 34318819 + 3 NA Intergenic Intergenic 251405 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 507-254 chr8 120323946 120324284 + 3 NA intron (NM_021110, intron 40 of 47) L1PA15|LINE|L1 121035 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 458-146 chr2 166448192 166448367 + 3 NA intron (NR_045628, intron 10 of 25) L1MA4|LINE|L1 38692 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 1547-4 chr8 87635169 87636364 + 3 NA Intergenic HAL1|LINE|L1 238249 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 401-76 chr13 73457743 73457904 + 3 NA Intergenic Intergenic -106421 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 609-40 chr17 17650421 17650766 + 3 NA Intergenic AluY|SINE|Alu 27095 NR_131243 105371564 Hs.369680 NR_131243 ENSG00000223979 SMCR2 TCONS_00025215 Smith-Magenis syndrome chromosome region, candidate 2 ncRNA 504-165 chr3 35355046 35355284 + 3 NA intron (NR_110817, intron 1 of 3) L1MC2|LINE|L1 38858 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 593-136 chr7 64707974 64708278 + 3 NA exon (NM_001282359, exon 4 of 4) exon (NM_001282359, exon 4 of 4) 29062 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 405-241 chr5 15048376 15048616 + 3 NA Intergenic Intergenic -176718 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 476-76 chr14 39615662 39615861 + 3 NA Intergenic Intergenic -183261 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 470-228 chr5 155339429 155339627 + 3 NA Intergenic MIR|SINE|MIR 325773 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 1105-11 chr20 54582994 54583745 + 3 NA intron (NM_018431, intron 2 of 7) L1PA7|LINE|L1 107776 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 275-249 chr3 103826865 103827023 + 3 NA Intergenic L1MC1|LINE|L1 -302828 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 535-120 chr2 17005864 17006162 + 3 NA Intergenic Intergenic -340179 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 506-39 chr10 78827123 78827306 + 3 NA Intergenic Intergenic 240234 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 704-46 chr2 187692609 187692982 + 3 NA Intergenic Intergenic -138290 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 772-3 chr1 91390004 91390418 + 3 NA intron (NM_001017975, intron 4 of 38) AluSc|SINE|Alu 14626 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 669-112 chr8 54964716 54965122 + 3 NA Intergenic L1M2|LINE|L1 -137109 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 824-8 chr13 44019379 44019936 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger -2678 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 421-154 chr2 185502229 185502470 + 3 NA Intergenic Intergenic 236370 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 478-41 chr11 64422456 64422639 + 3 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -26510 NR_073177 100996455 Hs.634142 NR_073177 ENSG00000181908 LINC02724 - long intergenic non-protein coding RNA 2724 ncRNA 1044-17 chr4 57572387 57572975 + 3 NA Intergenic L1MA8|LINE|L1 146809 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 395-260 chr4 160902209 160902385 + 3 NA Intergenic Intergenic -1120436 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 764-6 chr1 175695228 175695613 + 3 NA intron (NM_003285, intron 1 of 22) MLT1F1|LTR|ERVL-MaLR 48175 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 679-69 chr3 39702171 39702435 + 3 NA Intergenic L1M3d|LINE|L1 -106611 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 621-10 chr1 199045164 199045385 + 3 NA intron (NR_126351, intron 2 of 2) intron (NR_126351, intron 2 of 2) -26310 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 358-77 chr11 96837771 96837927 + 3 NA Intergenic Intergenic 329424 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1099-21 chr5 141329663 141330215 + 3 NA promoter-TSS (NM_018912) promoter-TSS (NM_018912) -746 NM_031993 56114 Hs.368160 NM_018912 ENSG00000204956 PCDHGA1 PCDH-GAMMA-A1 protocadherin gamma subfamily A, 1 protein-coding 364-98 chr12 9117554 9117765 + 3 NA Intergenic L2c|LINE|L2 -1430 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 543-152 chr20 47538426 47538706 + 3 NA intron (NM_181659, intron 1 of 22) AluSg|SINE|Alu 36679 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 508-149 chr3 74183746 74184048 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 337243 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 899-20 chr3 122435190 122435751 + 3 NA intron (NR_026698, intron 12 of 14) intron (NR_026698, intron 12 of 14) 19264 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 470-169 chr3 35781233 35781449 + 3 NA intron (NM_016300, intron 18 of 19) intron (NM_016300, intron 18 of 19) 36865 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 248-129 chr15 60231361 60231460 + 3 NA Intergenic Tigger15a|DNA|TcMar-Tigger 166576 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 517-116 chr19 56535526 56535836 + 3 NA Intergenic Intergenic -3267 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 330-119 chr12 37874466 37874698 + 3 NA Intergenic ALR/Alpha|Satellite|centr -442192 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 365-85 chr11 133434806 133435016 + 3 NA intron (NM_001012393, intron 1 of 7) Tigger12A|DNA|TcMar-Tigger 97590 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 641-36 chr14 69553177 69553551 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 21507 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 673-100 chr5 97400944 97401330 + 3 NA Intergenic Intergenic -103559 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 508-77 chr17 56888280 56888549 + 3 NA 3' UTR (NM_005082, exon 9 of 9) 3' UTR (NM_005082, exon 9 of 9) 2941 NR_037408 100500827 NR_037408 ENSG00000284542 MIR3614 mir-3614 microRNA 3614 ncRNA 553-150 chr3 46244768 46244991 + 3 NA intron (NM_178329, intron 1 of 1) intron (NM_178329, intron 1 of 1) 2419 NM_001164680 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 984-7 chr19 36998892 36999636 + 3 NA Intergenic Intergenic -78958 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 426-250 chr5 126103339 126103602 + 3 NA Intergenic Intergenic -76107 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 386-158 chr2 6288406 6288575 + 3 NA Intergenic Intergenic 86932 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 311-421 chr5 127358499 127358653 + 3 NA intron (NM_001308121, intron 4 of 13) intron (NM_001308121, intron 4 of 13) 67780 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 623-57 chr2 45407682 45408016 + 3 NA intron (NM_018079, intron 19 of 20) intron (NM_018079, intron 19 of 20) -152908 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 424-256 chr7 36132905 36133151 + 3 NA Intergenic L1MC1|LINE|L1 -20226 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 695-89 chr5 180192525 180192919 + 3 NA intron (NM_175062, intron 1 of 13) Charlie5|DNA|hAT-Charlie 16489 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 684-102 chr5 116660026 116660303 + 3 NA Intergenic LTR67B|LTR|ERVL -85341 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 855-32 chr21 29642237 29642827 + 3 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 46492 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 404-120 chr16 65677082 65677380 + 3 NA Intergenic MIRc|SINE|MIR -100931 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 508-178 chr4 172707261 172707549 + 3 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) -18488 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 260-279 chr3 105332505 105332644 + 3 NA Intergenic L1MA6|LINE|L1 -34139 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 418-245 chr6 127016646 127016900 + 3 NA Intergenic Intergenic -101898 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 830-12 chr12 46566142 46566630 + 3 NA intron (NR_125380, intron 3 of 3) L1MA5A|LINE|L1 182279 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 636-101 chr3 160733425 160733646 + 3 NA Intergenic Intergenic -22696 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 384-283 chr5 17013562 17013718 + 3 NA Intergenic AluY|SINE|Alu -77352 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 1069-2 chr11 13121975 13122447 + 3 NA Intergenic L1M4|LINE|L1 112895 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 1049-3 chr11 24319464 24320072 + 3 NA Intergenic Intergenic -177285 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 479-284 chrX 99745247 99745485 + 3 NA Intergenic L1ME2|LINE|L1 664907 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 580-26 chr11 78998221 78998531 + 3 NA intron (NM_001098816, intron 6 of 33) MIRc|SINE|MIR 403733 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 1257 chr2 126617669 126618457 + 3 NA Intergenic AluSx1|SINE|Alu -37872 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 327-295 chr20 41912558 41912801 + 3 NA Intergenic L1ME3B|LINE|L1 -294302 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 401-60 chr12 25105387 25105597 + 3 NA intron (NM_001366547, intron 21 of 22) intron (NM_001366547, intron 21 of 22) 52786 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 252-215 chr2 140874558 140874668 + 3 NA intron (NM_018557, intron 25 of 90) MER4-int|LTR|ERV1 -287928 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 272-174 chr2 22258039 22258203 + 3 NA Intergenic L1M5|LINE|L1 -278358 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 947-18 chr20 39573524 39573998 + 3 NA Intergenic MIRb|SINE|MIR -349013 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 345-255 chr2 65266784 65266980 + 3 NA intron (NM_001005386, intron 9 of 9) L2a|LINE|L2 39187 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 631-12 chr1 194436325 194436687 + 3 NA Intergenic Intergenic 1131761 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 520-273 chr7 13507326 13507648 + 3 NA Intergenic Intergenic 479027 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 438-274 chr8 90058975 90059166 + 3 NA 3' UTR (NM_004929, exon 11 of 11) 3' UTR (NM_004929, exon 11 of 11) 23809 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 942-13 chr2 5237533 5238153 + 3 NA Intergenic Intergenic 453275 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 583-163 chr8 108795009 108795306 + 3 NA Intergenic Intergenic -7563 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 459-208 chr4 52247310 52247471 + 3 NA Intergenic Intergenic 196086 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 703-57 chr3 35187917 35188380 + 3 NA intron (NR_110817, intron 2 of 3) MER20|DNA|hAT-Charlie 205875 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 534-81 chr15 78953769 78954018 + 3 NA Intergenic L1MB5|LINE|L1 -8795 NM_004390 1512 Hs.148641 NM_004390 ENSG00000103811 CTSH ACC-4|ACC-5|ACC4|ACC5|CPSB cathepsin H protein-coding 360-173 chr17 71949751 71949932 + 3 NA Intergenic MER4A1|LTR|ERV1 76138 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 306-532 chr8 137955152 137955331 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 128304 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 298-389 chr6 2008088 2008294 + 3 NA intron (NM_001253846, intron 4 of 10) L4_C_Mam|LINE|RTE-X 167800 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 338-205 chr16 79525794 79526020 + 3 NA Intergenic Intergenic 74830 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 591-147 chr6 40452786 40453136 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 74624 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 424-136 chr2 115265977 115266138 + 3 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -43180 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 411-244 chr5 171528476 171528672 + 3 NA Intergenic MIR|SINE|MIR 108927 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 282-165 chr17 57688135 57688244 + 3 NA Intergenic L1MEj|LINE|L1 57110 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 588-163 chr8 115236496 115236852 + 3 NA Intergenic Intergenic 431339 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 528-232 chr7 29796290 29796534 + 3 NA Intergenic L2c|LINE|L2 -10142 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 533-224 chr8 38591352 38591576 + 3 NA Intergenic L1ME4b|LINE|L1 9793 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 862-9 chr11 60650919 60651283 + 3 NA intron (NR_026946, intron 4 of 6) MSTD-int|LTR|ERVL-MaLR 35350 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 365-49 chr10 56874488 56874672 + 3 NA Intergenic Intergenic 429979 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 526-77 chr14 75433619 75433993 + 3 NA intron (NM_001135049, intron 1 of 3) intron (NM_001135049, intron 1 of 3) 1672 NM_001135049 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 434-323 chrX 57294077 57294354 + 3 NA intron (NR_148564, intron 2 of 11) intron (NR_148564, intron 2 of 11) 7361 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 607-148 chr8 129178862 129179188 + 3 NA Intergenic Intergenic 62215 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 755-77 chrX 98711114 98711599 + 3 NA Intergenic L1PREC2|LINE|L1 -1146821 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 840-48 chr8 49553834 49554438 + 3 NA Intergenic Intergenic -41956 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 615-5 chr1 224988758 224989000 + 3 NA intron (NM_001349911, intron 8 of 10) AluJr|SINE|Alu 59204 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 676-122 chr9 82286863 82287220 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 298269 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 219-54 chr11 84014140 84014223 + 3 NA intron (NM_001142699, intron 11 of 27) Tigger13a|DNA|TcMar-Tigger 259099 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 347-446 chr6 156204794 156204990 + 3 NA Intergenic L1MEg|LINE|L1 -173858 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 510-129 chr2 7384076 7384365 + 3 NA Intergenic L1MB2|LINE|L1 -37041 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 496-117 chr18 11008713 11008984 + 3 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 139914 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 432-147 chr2 205514662 205514851 + 3 NA intron (NM_205863, intron 20 of 21) intron (NM_205863, intron 20 of 21) -167744 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 816-55 chrX 45966393 45966893 + 3 NA Intergenic L1M4c|LINE|L1 -115153 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 447-41 chr11 59942350 59942506 + 3 NA promoter-TSS (NR_130719) promoter-TSS (NR_130719) -451 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 505-15 chr1 158269174 158269397 + 3 NA Intergenic L1PB2|LINE|L1 14861 NM_001763 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 387-43 chr10 82843048 82843252 + 3 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -610230 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 729-81 chr8 131842441 131842771 + 3 NA Intergenic Intergenic -61487 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 572-161 chr7 41520790 41521191 + 3 NA Intergenic Intergenic -172929 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 283-448 chr8 136574431 136574533 + 3 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 43684 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 528-75 chr13 60846799 60847059 + 3 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 173974 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 461-87 chr15 94628516 94628706 + 3 NA Intergenic Intergenic -226752 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 882-28 chr3 95652454 95653036 + 3 NA Intergenic Intergenic 30448 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 483-44 chr11 111475071 111475336 + 3 NA intron (NM_017589, intron 5 of 5) intron (NM_017589, intron 5 of 5) -35399 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 421-233 chr5 41475879 41476102 + 3 NA intron (NM_001005473, intron 1 of 2) LTR3B_|LTR|ERVK 34611 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 686-24 chr14 56370517 56370964 + 3 NA Intergenic L1PA11|LINE|L1 -143591 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 593-52 chr16 60620199 60620498 + 3 NA Intergenic L2a|LINE|L2 -260555 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 605-10 chr1 246986734 246987103 + 3 NA 3' UTR (NM_020394, exon 4 of 4) 3' UTR (NM_020394, exon 4 of 4) 21139 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 403-312 chr8 124995871 124996091 + 3 NA Intergenic Intergenic 2217 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 486-16 chr1 213836695 213836953 + 3 NA intron (NR_037850, intron 4 of 5) MER112|DNA|hAT-Charlie -87925 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 696-17 chr11 4412669 4413010 + 3 NA Intergenic MIR|SINE|MIR -19137 NM_003141 6737 Hs.532357 NM_003141 ENSG00000132109 TRIM21 RNF81|RO52|Ro/SSA|SSA|SSA1 tripartite motif containing 21 protein-coding 681-88 chr9 31492808 31493189 + 3 NA Intergenic Intergenic -111508 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 305-88 chr11 4772788 4772914 + 3 NA Intergenic Intergenic -2913 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 528-251 chr8 92431033 92431370 + 3 NA Intergenic Intergenic 224293 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 575-3 chr1 55569087 55569320 + 3 NA Intergenic Intergenic 343562 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 410-131 chr2 31186900 31187125 + 3 NA intron (NM_001145122, intron 15 of 21) intron (NM_001145122, intron 15 of 21) 30503 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 445-220 chr5 76664753 76664984 + 3 NA intron (NM_006633, intron 21 of 35) Tigger1|DNA|TcMar-Tigger -41465 NM_004101 2151 Hs.42502 NM_004101 ENSG00000164220 F2RL2 PAR-3|PAR3 coagulation factor II thrombin receptor like 2 protein-coding 534-214 chr6 48959418 48959717 + 3 NA Intergenic Intergenic 503686 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 623-23 chr11 50462078 50462429 + 3 NA Intergenic ALR/Alpha|Satellite|centr 53106 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 347-553 chr9 89710803 89711003 + 3 NA intron (NR_024280, intron 5 of 5) MER121|DNA|TcMar? 71120 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 258-71 chr11 95534629 95534766 + 3 NA Intergenic L1MDa|LINE|L1 255085 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 553-112 chr2 60247151 60247570 + 3 NA Intergenic Intergenic 135676 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 442-2 chr1 29375343 29375562 + 3 NA Intergenic L1MA4|LINE|L1 -25338 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 436-88 chr14 84331692 84331935 + 3 NA Intergenic L2|LINE|L2 -940119 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 840-34 chr3 36177915 36178606 + 3 NA Intergenic Intergenic -202227 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 898-37 chr8 51712387 51712850 + 3 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 96827 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 599-149 chrUn_KI270442v1 25589 25800 + 3 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 374-200 chr2 130375182 130375347 + 3 NA 3' UTR (NM_001142370, exon 11 of 11) 3' UTR (NM_001142370, exon 11 of 11) 19208 NM_001142370 26469 Hs.516390 NM_014369 ENSG00000072135 PTPN18 BDP1|PTP-HSCF protein tyrosine phosphatase non-receptor type 18 protein-coding 577-191 chr8 86593537 86593795 + 3 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 79231 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 766-35 chr2 107132657 107133011 + 3 NA Intergenic Intergenic 216691 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 522-11 chr1 199209700 199209970 + 3 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 61237 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 464-134 chr2 160913614 160913821 + 3 NA Intergenic LTR79|LTR|ERVL -223238 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 396-379 chrX 47670869 47671059 + 3 NA Intergenic L1M1|LINE|L1 -11784 NM_153477 8409 Hs.172791 NM_004182 ENSG00000126756 UXT ART-27|STAP1 ubiquitously expressed prefoldin like chaperone protein-coding 300-232 chr20 11076085 11076282 + 3 NA Intergenic Intergenic 49639 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 500-74 chr13 54351849 54352112 + 3 NA Intergenic Intergenic -39932 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 798-69 chr9 29072231 29072553 + 3 NA intron (NM_001354574, intron 1 of 5) L1MB7|LINE|L1 139907 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 442-197 chr3 133196926 133197139 + 3 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 60089 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 400-64 chr12 1059187 1059334 + 3 NA intron (NR_027949, intron 2 of 15) L1P4|LINE|L1 31512 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 1162-3 chr19 51826655 51827186 + 3 NA TTS (NM_002030) TTS (NM_002030) 31763 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 427-172 chr4 15896137 15896311 + 3 NA Intergenic Intergenic 42516 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 773-16 chr19 36469523 36469893 + 3 NA intron (NM_001145345, intron 4 of 4) intron (NM_001145345, intron 4 of 4) 19727 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 442-45 chr11 80943060 80943240 + 3 NA Intergenic Intergenic -180347 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 387-222 chr3 44682297 44682514 + 3 NA intron (NR_157564, intron 1 of 2) Tigger3|DNA|TcMar-Tigger 3248 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 419-240 chr5 153187756 153187978 + 3 NA Intergenic Intergenic -215518 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 360-55 chr10 108617818 108618086 + 3 NA Intergenic Intergenic -548659 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 401-72 chr13 26433216 26433486 + 3 NA Intergenic L1ME1|LINE|L1 -124332 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 615-22 chr11 105378673 105379026 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -231224 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 491-99 chr18 10021904 10022123 + 3 NA Intergenic Intergenic 107997 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 525-83 chr16 35722117 35722460 + 3 NA Intergenic Intergenic -24264 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 1125-14 chr6 155958717 155959413 + 3 NA Intergenic Intergenic 12268 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 710-18 chr11 40967821 40968136 + 3 NA intron (NM_001258419, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 491658 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 476-234 chr5 159472334 159472585 + 3 NA Intergenic HAL1|LINE|L1 -6183 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 464-209 chr6 23192723 23193012 + 3 NA Intergenic Intergenic -474943 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 779-54 chr8 91846214 91846670 + 3 NA Intergenic L1M3f|LINE|L1 171238 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 440-13 chr1 193980652 193980900 + 3 NA Intergenic Intergenic 676031 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 483-48 chr12 83277400 83277723 + 3 NA Intergenic Intergenic 590406 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 639-53 chr18 35890142 35890522 + 3 NA Intergenic MER77|LTR|ERVL 14594 NR_029616 406963 NR_029616 ENSG00000207797 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 572-140 chr5 64039339 64039712 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -77233 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 484-81 chr16 8455865 8456137 + 3 NA Intergenic L1M2|LINE|L1 133837 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 509-59 chr12 77022572 77022783 + 3 NA 3' UTR (NM_203394, exon 13 of 13) 3' UTR (NM_203394, exon 13 of 13) 42892 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 433-118 chr18 70984063 70984327 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -333241 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 586-10 chr1 153325380 153325632 + 3 NA Intergenic L1MC5|LINE|L1 -14788 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 557-177 chr6 169375849 169376088 + 3 NA Intergenic Intergenic -121854 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 457-265 chr8 131151533 131151689 + 3 NA Intergenic Intergenic -110702 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 396-333 chr7 54029571 54029724 + 3 NA Intergenic L1ME1|LINE|L1 -217716 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 863-29 chr3 178985895 178986437 + 3 NA Intergenic Intergenic 85643 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 901-36 chr7 87104776 87105253 + 3 NA Intergenic Intergenic -45360 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 371-148 chr18 33039873 33040088 + 3 NA intron (NM_001308126, intron 21 of 23) intron (NM_001308126, intron 21 of 23) -266957 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 959-18 chr2 147687110 147687783 + 3 NA Intergenic Intergenic -157071 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 440-144 chr21 21985251 21985406 + 3 NA Intergenic Intergenic 113131 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 626-36 chr12 133240772 133241115 + 3 NA Intergenic Intergenic -5107 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 1382-2 chr16 13093078 13093689 + 3 NA intron (NM_001145204, intron 2 of 4) MIRb|SINE|MIR 191785 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 343-545 chr8 97138589 97138747 + 3 NA intron (NM_016134, intron 7 of 7) L1ME3D|LINE|L1 139260 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 433-152 chr20 20276315 20276497 + 3 NA intron (NM_015585, intron 21 of 26) intron (NM_015585, intron 21 of 26) -91698 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 567-145 chr5 16019465 16019739 + 3 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat 84420 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 475-276 chr8 52992676 52992937 + 3 NA Intergenic Intergenic 52898 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 425-143 chr2 123988902 123989057 + 3 NA Intergenic L1ME1|LINE|L1 36195 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 472-22 chr1 190976211 190976405 + 3 NA Intergenic Intergenic 252190 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 1516 chr15 62261705 62262526 + 3 NA Intergenic Intergenic -13320 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 744-6 chr1 247063874 247064371 + 3 NA intron (NM_033213, intron 1 of 3) intron (NM_033213, intron 1 of 3) 14689 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 307-130 chr14 26787067 26787277 + 3 NA intron (NR_147061, intron 6 of 6) intron (NR_147061, intron 6 of 6) -22176 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 764-5 chr1 167878950 167879457 + 3 NA intron (NM_018417, intron 11 of 32) MIR|SINE|MIR 34931 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 871-8 chr16 10555073 10555445 + 3 NA intron (NM_001424, intron 1 of 4) intron (NM_001424, intron 1 of 4) 25339 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 546-64 chr13 104725734 104725950 + 3 NA Intergenic Intergenic -740025 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 527-50 chr11 72666760 72666957 + 3 NA intron (NM_002599, intron 1 of 30) AluSz|SINE|Alu 2206 NM_001146209 5138 Hs.503163 NM_002599 ENSG00000186642 PDE2A CGS-PDE|PDE2A1|PED2A4|cGSPDE phosphodiesterase 2A protein-coding 462-103 chr16 68109974 68110145 + 3 NA intron (NM_004555, intron 1 of 10) AluSx1|SINE|Alu 24689 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 667-121 chr8 134987663 134988009 + 3 NA Intergenic L2b|LINE|L2 137901 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 285-186 chr2 8208973 8209147 + 3 NA intron (NR_152741, intron 9 of 9) L1MDa|LINE|L1 119359 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 591-98 chr3 88652914 88653164 + 3 NA Intergenic Intergenic 314583 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 397-22 chr1 239068788 239068982 + 3 NA Intergenic Intergenic -317683 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 423-315 chr9 117462208 117462451 + 3 NA Intergenic L2c|LINE|L2 -47272 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 704-7 chr1 208686960 208687312 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -41552 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 399-126 chr18 67248855 67249077 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger 167382 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 495-123 chr2 186881077 186881327 + 3 NA Intergenic L1MA8|LINE|L1 -32032 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 355-132 chr12 98091883 98092094 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -96540 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 495-215 chr6 49874611 49874881 + 3 NA intron (NM_001205220, intron 1 of 7) L1PA11|LINE|L1 2350 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 653-133 chr9 137336681 137337020 + 3 NA intron (NM_017820, intron 17 of 21) L1MEd|LINE|L1 -34579 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 712-30 chr15 57109525 57109855 + 3 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -109740 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 576-7 chr1 178728815 178729134 + 3 NA intron (NM_152663, intron 1 of 19) intron (NM_152663, intron 1 of 19) 3730 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 418-47 chr11 96978688 96978948 + 3 NA Intergenic Intergenic 470393 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 574-165 chr7 41531725 41532100 + 3 NA Intergenic Intergenic -162007 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 442-217 chr4 113022027 113022310 + 3 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -27246 NM_020977 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 390-181 chr2 62556138 62556306 + 3 NA Intergenic Intergenic -50027 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 345-427 chr5 100869217 100869452 + 3 NA intron (NM_005668, intron 3 of 4) Tigger19b|DNA|TcMar-Tigger 33948 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 282-414 chr6 130516003 130516217 + 3 NA Intergenic AluSz|SINE|Alu 78993 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 463-319 chrX 76753002 76753248 + 3 NA intron (NR_110400, intron 1 of 3) L1MA4A|LINE|L1 166235 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 447-166 chr3 39610605 39610792 + 3 NA Intergenic Intergenic 108632 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 466-11 chr1 112786475 112786672 + 3 NA Intergenic AluSq2|SINE|Alu 64070 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 369-5 chr1 56836793 56836983 + 3 NA Intergenic MIRb|SINE|MIR -17484 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 1504 chr14 62438024 62438836 + 3 NA Intergenic L1M2a|LINE|L1 -298457 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 521-150 chr21 32208214 32208530 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 70677 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 353-330 chr3 85900274 85900471 + 3 NA intron (NM_001256502, intron 5 of 10) intron (NM_001256502, intron 5 of 10) -72322 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 1171-11 chr9 103777169 103777827 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -222211 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 525-163 chr3 95313676 95313915 + 3 NA Intergenic Intergenic 369398 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 632-10 chr10 62175751 62176106 + 3 NA Intergenic L1MEc|LINE|L1 92916 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 572-102 chr20 15693348 15693713 + 3 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 229784 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 461-168 chr3 44744565 44744869 + 3 NA Intergenic AluJb|SINE|Alu 15082 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 485-57 chr12 114245431 114245704 + 3 NA Intergenic L1ME3G|LINE|L1 -3797 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 496-182 chr3 107159510 107159837 + 3 NA intron (NR_028303, intron 1 of 3) L1PA8|LINE|L1 80965 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 451-118 chr2 114702551 114702770 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 130888 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 234-136 chr17 61838962 61839129 + 3 NA intron (NM_032043, intron 6 of 19) intron (NM_032043, intron 6 of 19) 24514 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 360-294 chr3 19464094 19464269 + 3 NA intron (NM_144633, intron 11 of 15) L1M5|LINE|L1 -149250 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 357-34 chr10 59813557 59813798 + 3 NA intron (NM_005436, intron 4 of 8) intron (NM_005436, intron 4 of 8) -60222 NM_001304732 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 849-27 chr3 34478516 34479045 + 3 NA Intergenic L1M3|LINE|L1 680150 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 842-30 chr3 85978277 85978828 + 3 NA intron (NM_001256504, intron 9 of 10) intron (NM_001256504, intron 9 of 10) -150502 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 415-174 chr3 57392423 57392695 + 3 NA intron (NM_001366028, intron 44 of 73) AluJo|SINE|Alu -99874 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 635-118 chr8 135411653 135412005 + 3 NA Intergenic L1MB3|LINE|L1 -45627 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 406-97 chr15 56063948 56064124 + 3 NA Intergenic L1MC1|LINE|L1 -70424 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 556-143 chr3 79456840 79457075 + 3 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) 45230 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 697-78 chr9 80561274 80561663 + 3 NA Intergenic MIRb|SINE|MIR 586445 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 850-6 chr10 59117168 59117557 + 3 NA Intergenic Intergenic 59102 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 489-250 chr8 36345546 36345792 + 3 NA Intergenic Intergenic -438705 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 446-62 chr11 50395430 50395617 + 3 NA Intergenic ALR/Alpha|Satellite|centr -13624 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 345-446 chr5 152962360 152962547 + 3 NA intron (NR_109877, intron 2 of 4) L2|LINE|L2 9896 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 617-50 chr17 30086928 30087382 + 3 NA exon (NM_198529, exon 19 of 23) exon (NM_198529, exon 19 of 23) -29652 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 1028-5 chr14 62434291 62434774 + 3 NA Intergenic L1MEc|LINE|L1 -294559 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 444-11 chr1 100452549 100452720 + 3 NA intron (NM_001319212, intron 7 of 13) intron (NM_001319212, intron 7 of 13) -85505 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 507-4 chr1 56207224 56207461 + 3 NA Intergenic L1MA9|LINE|L1 -207621 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 495-5 chr1 78856226 78856489 + 3 NA Intergenic Intergenic 150373 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 386-318 chr7 3355916 3356115 + 3 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 54763 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 561-212 chr8 132435977 132436273 + 3 NA intron (NM_004519, intron 1 of 14) Zaphod|DNA|hAT-Tip100 11137 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 489-153 chr2 194360610 194360884 + 3 NA intron (NR_110222, intron 1 of 5) intron (NR_110222, intron 1 of 5) 16478 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 558-218 chr8 114486418 114486649 + 3 NA Intergenic Intergenic -1049594 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 398-103 chr14 57580861 57581068 + 3 NA 3' UTR (NM_001352016, exon 4 of 4) 3' UTR (NM_001352016, exon 4 of 4) -87107 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 459-90 chr15 27171419 27171686 + 3 NA intron (NM_001270873, intron 3 of 5) (AT)n|Simple_repeat|Simple_repeat -10233 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 724-73 chr5 107095721 107096124 + 3 NA Intergenic MIR|SINE|MIR -84908 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 674-69 chr4 99390892 99391291 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR -38345 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 605-99 chr6 61845672 61846050 + 3 NA intron (NM_001350622, intron 6 of 9) MSTA|LTR|ERVL-MaLR 271731 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 336-141 chr12 117822404 117822613 + 3 NA intron (NM_173598, intron 3 of 19) Tigger5b|DNA|TcMar-Tigger 146482 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 472-335 chr8 137028949 137029168 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 384530 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 494-302 chr8 138408903 138409176 + 3 NA intron (NM_001362965, intron 1 of 19) Tigger1|DNA|TcMar-Tigger 88222 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 719-90 chrX 56833724 56834099 + 3 NA Intergenic ERVL-int|LTR|ERVL -96327 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 468-57 chr12 40152709 40152919 + 3 NA Intergenic Intergenic -3425 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 553-59 chr14 32805503 32805783 + 3 NA intron (NM_004274, intron 12 of 13) intron (NM_004274, intron 12 of 13) -133236 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 393-95 chr14 52174999 52175210 + 3 NA Intergenic Intergenic -92594 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 528-192 chr4 181724174 181724449 + 3 NA Intergenic LTR40A1|LTR|ERVL 105662 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 569-62 chr15 36520344 36520604 + 3 NA Intergenic Intergenic -59152 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 242-50 chr11 15523021 15523164 + 3 NA Intergenic L2a|LINE|L2 -120793 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 395-228 chr3 111286408 111286657 + 3 NA Intergenic L2a|LINE|L2 214716 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 975-8 chr16 65269590 65270368 + 3 NA Intergenic Intergenic -93406 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 377-356 chr6 159611738 159611899 + 3 NA Intergenic Intergenic 81423 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 678-103 chr8 89208804 89209299 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 548660 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 761-17 chr15 57183191 57183601 + 3 NA intron (NM_001322154, intron 6 of 20) intron (NM_001322154, intron 6 of 20) -36034 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 465-285 chr8 48225706 48225869 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 217356 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 571-36 chr12 44540147 44540386 + 3 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 335395 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 502-23 chr1 227586114 227586295 + 3 NA intron (NR_102302, intron 2 of 5) AluJr|SINE|Alu 22648 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 359-207 chr19 36615775 36615974 + 3 NA intron (NM_001256838, intron 4 of 4) MER31-int|LTR|ERV1 10561 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 313-333 chr3 39073284 39073455 + 3 NA intron (NR_144401, intron 7 of 19) intron (NR_144401, intron 7 of 19) 21077 NM_001346228 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 549-64 chr15 44357382 44357692 + 3 NA intron (NR_157849, intron 7 of 9) L1MC1|LINE|L1 68818 NM_177974 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility 4 protein-coding 407-92 chr15 79565716 79565986 + 3 NA Intergenic L1ME4b|LINE|L1 133335 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 579-127 chr5 10100284 10100539 + 3 NA Intergenic L1M7|LINE|L1 149477 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 878-17 chr15 27801595 27802047 + 3 NA intron (NM_001300984, intron 22 of 22) L1M4|LINE|L1 297494 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 363-470 chr9 27995191 27995364 + 3 NA intron (NM_001354574, intron 5 of 5) L1MA4|LINE|L1 -421411 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 372-83 chr11 98032837 98032998 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -988032 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 554-160 chr4 87626567 87626849 + 3 NA Intergenic Intergenic 18179 NM_014208 1834 Hs.678914 NM_014208 ENSG00000152591 DSPP DFNA39|DGI1|DMP3|DPP|DSP dentin sialophosphoprotein protein-coding 593-36 chr12 118803829 118804159 + 3 NA Intergenic L1MB7|LINE|L1 29542 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 896-31 chr6 62675708 62676212 + 3 NA Intergenic (TAATA)n|Simple_repeat|Simple_repeat -389733 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 732-34 chr17 66137638 66138038 + 3 NA intron (NM_001353129, intron 4 of 26) L1M4c|LINE|L1 54054 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 439-61 chr11 115863349 115863600 + 3 NA Intergenic L1MA4A|LINE|L1 -103274 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 275-109 chr14 48683778 48683894 + 3 NA Intergenic Intergenic -888822 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 671-59 chr3 61650497 61650898 + 3 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 89126 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 345-232 chr19 6175492 6175766 + 3 NA intron (NM_030924, intron 7 of 14) L2a|LINE|L2 39962 NM_001289178 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 456-100 chr15 25652177 25652351 + 3 NA Intergenic MER3|DNA|hAT-Charlie 196561 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 477-135 chr19 57690272 57690554 + 3 NA non-coding (NR_073102, exon 2 of 2) non-coding (NR_073102, exon 2 of 2) 8436 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 397-151 chr2 40315104 40315263 + 3 NA intron (NM_001351483, intron 2 of 8) L1ME1|LINE|L1 115121 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 505-128 chr19 56627915 56628221 + 3 NA intron (NR_163262, intron 3 of 5) intron (NR_163262, intron 3 of 5) -15091 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 366-168 chr17 66321733 66321910 + 3 NA intron (NM_002737, intron 2 of 16) AluSx|SINE|Alu 19208 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 288-147 chr16 59282751 59282904 + 3 NA Intergenic L1MA4A|LINE|L1 472364 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 521-110 chr19 9358510 9358763 + 3 NA intron (NM_001172650, intron 5 of 11) AluJr|SINE|Alu -4377 NM_003451 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 472-222 chr4 10343693 10343937 + 3 NA Intergenic Intergenic 113611 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 350-435 chr6 45304030 45304179 + 3 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -24213 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 689-48 chr2 103480977 103481384 + 3 NA Intergenic L1MCb|LINE|L1 -496751 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 447-194 chr4 56227440 56227691 + 3 NA intron (NM_020722, intron 2 of 10) MER58A|DNA|hAT-Charlie 57370 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 527-25 chr10 49206799 49206995 + 3 NA Intergenic Intergenic -18506 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 540-137 chr22 45023707 45024030 + 3 NA Intergenic Intergenic -13863 NM_001135862 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 446-271 chr6 123071911 123072152 + 3 NA 3' UTR (NM_001010852, exon 6 of 6) 3' UTR (NM_001010852, exon 6 of 6) 75796 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 488-94 chr16 28138873 28139080 + 3 NA intron (NM_001270940, intron 10 of 24) L1MEf|LINE|L1 72989 NM_015171 23214 Hs.460468 NM_015171 ENSG00000169180 XPO6 EXP6|RANBP20 exportin 6 protein-coding 469-10 chr1 104438091 104438271 + 3 NA Intergenic Intergenic 365158 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 536-34 chr10 78163320 78163637 + 3 NA Intergenic Intergenic -85147 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 443-237 chr5 25131547 25131758 + 3 NA intron (NR_147006, intron 4 of 4) intron (NR_147006, intron 4 of 4) 59004 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 451-123 chr2 226450378 226450626 + 3 NA Intergenic Intergenic 208291 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 472-330 chr8 129557598 129557857 + 3 NA intron (NR_130917, intron 1 of 3) L1ME4a|LINE|L1 17291 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 644-5 chr1 219315919 219316307 + 3 NA Intergenic MamSINE1|SINE|tRNA-RTE 141144 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 432-301 chr9 113093362 113093571 + 3 NA Intergenic L1MA6|LINE|L1 18211 NR_024376 100128385 Hs.99052 NR_024376 ENSG00000225684 FAM225B C9orf110|LINC00256B|NCRNA00256B family with sequence similarity 225 member B ncRNA 530-55 chr12 33159903 33160098 + 3 NA Intergenic Intergenic -263154 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 443-166 chr2 221933488 221933667 + 3 NA Intergenic Intergenic -359375 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 247-201 chr2 81390267 81390431 + 3 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 76597 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 469-230 chr5 155979132 155979362 + 3 NA Intergenic Intergenic -347510 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 489-10 chr1 115000536 115000728 + 3 NA Intergenic L1PB1|LINE|L1 -29192 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 759-52 chr4 66821415 66821748 + 3 NA Intergenic Intergenic 544757 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 250-281 chr3 86092784 86092941 + 3 NA Intergenic Intergenic -264812 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 953-25 chr5 144841407 144841817 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 636221 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 370-135 chr14 27304648 27304863 + 3 NA Intergenic Intergenic -307833 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 356-383 chr5 12378390 12378537 + 3 NA Intergenic L1ME1|LINE|L1 -196394 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 328-369 chr3 139795719 139795852 + 3 NA Intergenic Intergenic -117735 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 848-49 chr9 24421703 24422365 + 3 NA Intergenic L2b|LINE|L2 123642 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 518-182 chr3 103476816 103476995 + 3 NA Intergenic Intergenic 47211 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 460-164 chr2 223435458 223435672 + 3 NA Intergenic MamGypsy2-I|LTR|Gypsy 166796 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 794-25 chr2 186981985 186982402 + 3 NA Intergenic Intergenic -133023 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 769-13 chr13 53021494 53022043 + 3 NA Intergenic Intergenic -7045 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 375-277 chr3 193943977 193944114 + 3 NA Intergenic Intergenic 50193 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 827-50 chr6 156033611 156034034 + 3 NA Intergenic L1MEf|LINE|L1 87025 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 423-153 chr20 41860163 41860329 + 3 NA Intergenic Intergenic -241869 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 462-79 chr14 62733007 62733220 + 3 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 312345 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 428-102 chr18 52635069 52635277 + 3 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 294976 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 844-68 chr8 102547402 102547966 + 3 NA Intergenic L1ME4a|LINE|L1 -3905 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 432-172 chr3 27195662 27195883 + 3 NA intron (NM_001304384, intron 4 of 16) L2c|LINE|L2 20751 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 353-260 chr2 156743578 156743778 + 3 NA Intergenic Intergenic 307299 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 285-362 chr6 11781938 11782162 + 3 NA Intergenic Intergenic -3003 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 488-27 chr10 54321686 54322036 + 3 NA intron (NM_001142767, intron 6 of 30) intron (NM_001142767, intron 6 of 30) -164369 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 491-164 chr3 25489905 25490153 + 3 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 31719 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 1164-8 chr3 130606545 130607170 + 3 NA intron (NM_001102608, intron 19 of 35) intron (NM_001102608, intron 19 of 35) 46523 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 479-143 chr3 88465650 88465848 + 3 NA exon (NM_001368165, exon 2 of 2) exon (NM_001368165, exon 2 of 2) 127293 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 588-44 chr15 61826621 61826915 + 3 NA Intergenic L1ME4b|LINE|L1 96850 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 727-91 chr9 42388133 42388506 + 3 NA Intergenic Intergenic 181030 NR_126050 103908605 Hs.721139 NR_126050 LOC103908605 - uncharacterized LOC103908605 ncRNA 461-93 chr16 8309741 8309898 + 3 NA Intergenic MIRc|SINE|MIR 280019 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1045-11 chr2 121672038 121672611 + 3 NA intron (NR_037857, intron 2 of 3) L1PBa|LINE|L1 22335 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 490-266 chr7 55162213 55162506 + 3 NA intron (NM_201284, intron 13 of 15) intron (NM_201284, intron 13 of 15) 26590 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 406-56 chr12 4002567 4002756 + 3 NA Intergenic Intergenic -129213 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 444 chr1 13453529 13453834 + 3 NA Intergenic Intergenic 43231 NM_001099852 645425 NM_001099852 ENSG00000204478 PRAMEF20 PRAMEF21 PRAME family member 20 protein-coding 430-122 chr18 31737543 31737700 + 3 NA Intergenic AluJo|SINE|Alu 23259 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 616-22 chr11 14700155 14700504 + 3 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 56525 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 274-222 chr2 142964445 142964570 + 3 NA intron (NM_001199241, intron 9 of 14) L1ME3|LINE|L1 86843 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 348-433 chr5 147828533 147828678 + 3 NA intron (NM_001354966, intron 3 of 4) intron (NM_001354966, intron 3 of 4) 10626 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 229-169 chr2 7707231 7707329 + 3 NA Intergenic MIRb|SINE|MIR 192375 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 457-170 chr3 187476942 187477202 + 3 NA Intergenic MER4A1|LTR|ERV1 30026 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 604-109 chr3 94961737 94962072 + 3 NA intron (NR_015400, intron 1 of 7) MER67C|LTR|ERV1 23641 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 421-2 chr1 7018462 7018740 + 3 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 233147 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 534-198 chr5 45988856 45989048 + 3 NA Intergenic ALR/Alpha|Satellite|centr -292572 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 419-175 chr3 9580446 9580698 + 3 NA Intergenic PABL_B-int|LTR|ERV1 -26750 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 1178-7 chr4 5217994 5218628 + 3 NA intron (NM_001306082, intron 4 of 12) L2a|LINE|L2 166831 NM_018401 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 566-113 chr20 62035800 62036058 + 3 NA intron (NM_003185, intron 1 of 14) L1ME1|LINE|L1 -28873 NR_130463 100422838 NR_130463 ENSG00000265306 MIR3195 - microRNA 3195 ncRNA 1099 chr1 68869698 68870107 + 3 NA Intergenic MIRb|SINE|MIR -185996 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 500-188 chr3 111733570 111733921 + 3 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 1249 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 546-179 chr4 179091779 179092001 + 3 NA Intergenic L1MD1|LINE|L1 -1183954 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 467-217 chr5 22910262 22910575 + 3 NA Intergenic Intergenic -57074 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 720-10 chr10 61803038 61803364 + 3 NA Intergenic L2a|LINE|L2 -98498 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 648-60 chr18 25713372 25713772 + 3 NA Intergenic Intergenic -361406 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 1116-4 chr14 63167210 63168021 + 3 NA Intergenic L1MA7|LINE|L1 -36828 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 300-389 chr6 63060630 63060791 + 3 NA Intergenic HAL1|LINE|L1 259267 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 315-308 chr3 39557313 39557499 + 3 NA Intergenic Intergenic 55340 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 741-69 chr8 50804000 50804499 + 3 NA Intergenic MER61A|LTR|ERV1 640118 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 490-291 chr8 84049416 84049693 + 3 NA Intergenic Intergenic -133233 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 459-334 chrX 80865577 80865770 + 3 NA Intergenic Intergenic -55796 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 316-339 chr3 9895179 9895358 + 3 NA TTS (NM_001363890) TTS (NM_001363890) 4658 NM_032492 84522 Hs.24054 NM_032492 ENSG00000171135 JAGN1 GL009|SCN6 jagunal homolog 1 protein-coding 683-82 chr7 51437324 51437660 + 3 NA Intergenic L1M2|LINE|L1 -44236 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 478-248 chr6 44945608 44945850 + 3 NA intron (NM_181356, intron 11 of 12) Tigger1|DNA|TcMar-Tigger 252041 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 513-204 chr4 63048253 63048540 + 3 NA Intergenic L1MCa|LINE|L1 -886631 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 563-90 chr2 88080714 88080966 + 3 NA intron (NM_001330364, intron 1 of 8) L3|LINE|CR1 1759 NR_039940 100616447 NR_039940 ENSG00000265003 MIR4780 - microRNA 4780 ncRNA 567-133 chr4 104734812 104735155 + 3 NA Intergenic Intergenic -240089 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 997-22 chr4 101681307 101681829 + 3 NA Intergenic AluSz6|SINE|Alu -109039 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 1056-2 chr10 59490325 59490942 + 3 NA Intergenic L1MA5|LINE|L1 -127452 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 767-19 chr19 44507463 44507814 + 3 NA intron (NM_001102597, intron 11 of 11) intron (NM_001102597, intron 11 of 11) -7116 NM_001288761 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 464-66 chr14 64270826 64271012 + 3 NA intron (NR_073497, intron 1 of 6) L1M1|LINE|L1 12156 NR_073497 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 383-279 chr4 53858174 53858373 + 3 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 129009 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 257-75 chr11 113559563 113559720 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -84243 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 718-95 chr8 122926319 122926736 + 3 NA intron (NM_001362797, intron 3 of 4) ERVL-B4-int|LTR|ERVL 99245 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 599-138 chr8 129811869 129812155 + 3 NA Intergenic L1PA16|LINE|L1 -25388 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 737-61 chr4 130593975 130594261 + 3 NA Intergenic Intergenic 217757 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 166-27 chr14 50716930 50716987 + 3 NA Intergenic Intergenic -48652 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 433-289 chr8 130675023 130675206 + 3 NA Intergenic Intergenic -231440 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 589-11 chr10 66074036 66074344 + 3 NA intron (NM_001127384, intron 14 of 17) L1ME3A|LINE|L1 502765 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 533-171 chr5 5878907 5879132 + 3 NA Intergenic AluSc|SINE|Alu 456342 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 579-115 chr4 68256661 68256964 + 3 NA Intergenic L2b|LINE|L2 -11118 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 347-170 chr16 76030512 76030752 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -246769 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 516-64 chr13 92454774 92455113 + 3 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -35220 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 419-70 chr12 53780398 53780571 + 3 NA Intergenic Tigger19a|DNA|TcMar-Tigger -23450 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 580-6 chr1 157550481 157550697 + 3 NA intron (NM_001195388, intron 1 of 16) L2a|LINE|L2 1926 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 572-39 chr12 30273666 30274133 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 403345 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 423-260 chr7 4885031 4885199 + 3 NA Intergenic AluSx1|SINE|Alu -1399 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 284-113 chr14 49835873 49836038 + 3 NA intron (NM_001301732, intron 6 of 31) L1M4|LINE|L1 16833 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 764-39 chr2 123816983 123817297 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger 208034 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 235-277 chr5 23286020 23286098 + 3 NA Intergenic Intergenic -221550 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 487-189 chr3 97657344 97657702 + 3 NA intron (NM_001080448, intron 14 of 17) MIRc|SINE|MIR -106998 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 469-229 chr5 153740595 153740838 + 3 NA intron (NM_000827, intron 11 of 15) MLT1I|LTR|ERVL-MaLR 158271 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 550-209 chr7 6471755 6472128 + 3 NA intron (NM_001100603, intron 2 of 3) AluSc|SINE|Alu 12211 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 291-60 chr10 118874427 118874546 + 3 NA Intergenic MIR3|SINE|MIR -119516 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 737-42 chr2 49280761 49281171 + 3 NA Intergenic Intergenic -126439 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 444-67 chr14 44488306 44488485 + 3 NA Intergenic L1PA17|LINE|L1 18888 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 967-13 chr2 236233479 236234183 + 3 NA intron (NM_212556, intron 3 of 5) L1ME1|LINE|L1 30514 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 910-24 chr21 31619104 31619537 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -40302 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 381-145 chr17 77947911 77948100 + 3 NA Intergenic AluSz|SINE|Alu -56232 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 330-465 chr6 120322498 120322711 + 3 NA Intergenic L1PA12|LINE|L1 307425 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 591-7 chr1 173506732 173506984 + 3 NA exon (NM_178527, exon 25 of 28) exon (NM_178527, exon 25 of 28) 29523 NM_004905 9588 Hs.120 NM_004905 ENSG00000117592 PRDX6 1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29 peroxiredoxin 6 protein-coding 564-52 chr14 56169992 56170343 + 3 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 51756 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 458-135 chr2 97871580 97871802 + 3 NA intron (NM_015348, intron 4 of 40) LTR8B|LTR|ERV1 124257 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 661-3 chr1 74886288 74886668 + 3 NA Intergenic L1PB4|LINE|L1 -153070 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 584-152 chr6 84685292 84685545 + 3 NA Intergenic Intergenic -4040 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 568-17 chr10 78122579 78122817 + 3 NA Intergenic L1M4|LINE|L1 88835 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 380-164 chr18 63917412 63917624 + 3 NA exon (NM_005024, exon 3 of 8) exon (NM_005024, exon 3 of 8) 9560 NM_005024 5273 Hs.158339 NM_005024 ENSG00000242550 SERPINB10 PI-10|PI10 serpin family B member 10 protein-coding 751-32 chr2 18184767 18185138 + 3 NA Intergenic Intergenic 306285 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 313-84 chr11 77046462 77046672 + 3 NA Intergenic L1M4|LINE|L1 12169 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 472-279 chr6 113929459 113929715 + 3 NA Intergenic MLT2A1|LTR|ERVL 25200 NR_027060 285759 Hs.376634 NM_173673 ENSG00000175967 FLJ34503 - uncharacterized FLJ34503 ncRNA 534-207 chr5 165053884 165054153 + 3 NA Intergenic MER68|LTR|ERVL 583739 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 532-70 chr14 71250800 71251180 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie -69486 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 990-12 chr18 1036115 1036651 + 3 NA Intergenic Intergenic -108390 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 216-267 chr4 172158425 172158519 + 3 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -344865 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 426-40 chr11 31275138 31275363 + 3 NA intron (NM_181807, intron 7 of 8) intron (NM_181807, intron 7 of 8) 94489 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 217-351 chr7 53498843 53498985 + 3 NA Intergenic L1MB8|LINE|L1 313017 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 452-147 chr2 196381410 196381638 + 3 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) -19347 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 556-106 chr2 104700450 104700727 + 3 NA Intergenic Intergenic 57131 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 551-177 chr6 54361014 54361311 + 3 NA intron (NM_014464, intron 9 of 10) Tigger1|DNA|TcMar-Tigger 52721 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 454-122 chr18 2138387 2138583 + 3 NA Intergenic Intergenic 433020 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 800-54 chr5 171264404 171264781 + 3 NA intron (NM_022897, intron 24 of 27) MIR|SINE|MIR -44656 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 444-254 chr8 62168484 62168755 + 3 NA Intergenic L1PB1|LINE|L1 -80235 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 570-60 chr14 56970530 56970797 + 3 NA Intergenic L2a|LINE|L2 157505 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 309-417 chr5 5937151 5937287 + 3 NA Intergenic HAL1|LINE|L1 400073 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 562-151 chr3 175886702 175886923 + 3 NA Intergenic MER57A-int|LTR|ERV1 -110479 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 578-67 chr16 63498506 63498764 + 3 NA Intergenic Intergenic -1462197 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 395-181 chr2 144860820 144861063 + 3 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 192974 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 448-64 chr12 73559569 73559781 + 3 NA Intergenic L1PA16|LINE|L1 400485 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 339-312 chr20 19432105 19432299 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -147606 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 569-105 chr2 185158328 185158740 + 3 NA Intergenic L1ME1|LINE|L1 8538 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 437-239 chr6 62010460 62010704 + 3 NA intron (NR_146874, intron 3 of 13) THE1B|LTR|ERVL-MaLR 275643 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 509-128 chr20 14497495 14497755 + 3 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) -56759 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 524-255 chr8 57567073 57567366 + 3 NA Intergenic Intergenic -178930 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 401-314 chr8 59131357 59131562 + 3 NA Intergenic Intergenic 12249 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 732-96 chr8 137100949 137101327 + 3 NA Intergenic Intergenic 312450 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 614-91 chr4 57480954 57481321 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 55265 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 327-97 chr11 112855591 112855752 + 3 NA Intergenic MIR|SINE|MIR -105749 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 490-247 chr6 119576955 119577247 + 3 NA intron (NR_134600, intron 2 of 3) L1MB1|LINE|L1 27293 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 449-174 chr3 118257057 118257356 + 3 NA Intergenic L1MB7|LINE|L1 -384562 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 495-169 chr4 23797352 23797583 + 3 NA intron (NM_001330752, intron 13 of 13) intron (NM_001330752, intron 13 of 13) 83825 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 866-43 chr6 153877227 153877751 + 3 NA Intergenic Intergenic -133007 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 661-18 chr12 37645922 37646292 + 3 NA Intergenic ALR/Alpha|Satellite|centr -670667 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 523-89 chr15 87482927 87483164 + 3 NA Intergenic MIRb|SINE|MIR -93884 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 326-154 chr14 76287982 76288107 + 3 NA Intergenic L1MEg|LINE|L1 -83303 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 459-263 chr6 117191323 117191533 + 3 NA Intergenic MLT2B1|LTR|ERVL -74130 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 828-44 chr6 111628328 111628814 + 3 NA Intergenic Intergenic -22297 NM_001164281 10758 Hs.561514 NM_147200 ENSG00000056972 TRAF3IP2 ACT1|C6orf2|C6orf4|C6orf5|C6orf6|CANDF8|CIKS|PSORS13 TRAF3 interacting protein 2 protein-coding 391-292 chr5 119424862 119425011 + 3 NA Intergenic Intergenic -27561 NM_001199291 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 1062-11 chr20 59259015 59259539 + 3 NA TTS (NM_178457) TTS (NM_178457) -41334 NM_001302456 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 444-131 chr2 207195624 207195901 + 3 NA intron (NR_110283, intron 3 of 3) Tigger9a|DNA|TcMar-Tigger -28516 NM_001270943 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 556-8 chr1 114673362 114673585 + 3 NA intron (NM_001172626, intron 14 of 14) intron (NM_001172626, intron 14 of 14) -3424 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 648-89 chr3 74699354 74699760 + 3 NA Intergenic Intergenic -178417 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 435-3 chr1 29447729 29447912 + 3 NA Intergenic LTR47B2|LTR|ERVL -97706 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 798-55 chr5 121598106 121598465 + 3 NA Intergenic Intergenic -253597 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 466-242 chr7 21793691 21793964 + 3 NA intron (NM_001277115, intron 61 of 81) L1M3f|LINE|L1 152072 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 491-54 chr12 117396872 117397146 + 3 NA Intergenic L1M6B|LINE|L1 -35207 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 684-112 chr7 11245382 11245754 + 3 NA Intergenic L2c|LINE|L2 271696 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 424-155 chr20 11063986 11064216 + 3 NA Intergenic Intergenic 37557 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 229-103 chr13 66857607 66857706 + 3 NA intron (NR_046527, intron 1 of 5) intron (NR_046527, intron 1 of 5) 32487 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 323-276 chr2 147439430 147439616 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -404994 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 481-212 chr3 193248304 193248605 + 3 NA intron (NM_020386, intron 1 of 3) L1MA7|LINE|L1 6675 NR_026877 84789 Hs.676481 NM_032703 MGC2889 - uncharacterized protein MGC2889 ncRNA 358-26 chr1 218187143 218187318 + 3 NA Intergenic Intergenic -98063 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 689-61 chr3 1590740 1591218 + 3 NA Intergenic L1M4|LINE|L1 497955 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 541-18 chr10 44161351 44161639 + 3 NA Intergenic MER21B|LTR|ERVL -131255 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 381-129 chr16 78283682 78283870 + 3 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 184122 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 687-121 chr8 115312419 115312787 + 3 NA Intergenic Intergenic 355410 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 419-204 chr4 72730224 72730485 + 3 NA Intergenic L1M1|LINE|L1 -161133 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 606-154 chr7 108437679 108437921 + 3 NA intron (NM_001371132, intron 1 of 30) L1MB7|LINE|L1 18597 NM_001193584 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 904-20 chr17 66737463 66737972 + 3 NA intron (NM_002737, intron 10 of 16) intron (NM_002737, intron 10 of 16) -49355 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 314-202 chr16 12529862 12530081 + 3 NA intron (NM_032167, intron 20 of 20) intron (NM_032167, intron 20 of 20) -190350 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 624-108 chr6 56439949 56440234 + 3 NA Intergenic Intergenic -45963 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 461-30 chr10 42382271 42382569 + 3 NA Intergenic MER57A-int|LTR|ERV1 -14375 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 568-193 chr8 63918815 63919093 + 3 NA intron (NR_125826, intron 4 of 4) L1MEd|LINE|L1 149524 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 732-61 chr3 89344284 89344707 + 3 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 236874 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 476-179 chr3 89790229 89790404 + 3 NA Intergenic L1MC4a|LINE|L1 682695 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 688-69 chr21 18108975 18109425 + 3 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -135633 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 368-203 chr18 9412655 9412845 + 3 NA Intergenic L1MEd|LINE|L1 -62763 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 596-116 chr21 28172390 28172652 + 3 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 56146 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 683-29 chr17 69883062 69883406 + 3 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -78473 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 374-356 chr7 20285533 20285709 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -11087 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 670-72 chr21 21915172 21915548 + 3 NA Intergenic Intergenic 168375 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 350-304 chr3 39223846 39223987 + 3 NA Intergenic L1MB8|LINE|L1 -31321 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 448-3 chr1 49788410 49788691 + 3 NA intron (NM_001323575, intron 2 of 12) L1M4a1|LINE|L1 235404 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 533-186 chr5 84709718 84709924 + 3 NA Intergenic Intergenic -324941 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 662-6 chr1 166518819 166519223 + 3 NA Intergenic Intergenic -28982 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 487-108 chr16 77648001 77648314 + 3 NA Intergenic Intergenic -74335 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 487-47 chr10 110047206 110047518 + 3 NA intron (NM_001121, intron 1 of 13) MIRc|SINE|MIR -38981 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 846-34 chr4 29019176 29019552 + 3 NA Intergenic Intergenic 22580 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 386-62 chr11 101732957 101733211 + 3 NA Intergenic Intergenic -149077 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 391-81 chr12 105926649 105926855 + 3 NA Intergenic Intergenic 213281 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 418-19 chr1 233577280 233577569 + 3 NA Intergenic L1MEg2|LINE|L1 -36682 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 488-221 chr5 107056335 107056548 + 3 NA Intergenic Intergenic -45427 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 616-133 chr5 60835664 60836078 + 3 NA intron (NM_024930, intron 1 of 8) Tigger13a|DNA|TcMar-Tigger 8398 NM_001297617 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 524-147 chr3 7197242 7197568 + 3 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) -303388 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 261-36 chr10 57210773 57210903 + 3 NA Intergenic Intergenic 93721 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 558-221 chr8 126520687 126521065 + 3 NA Intergenic Intergenic 37602 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 442-173 chr22 27319974 27320183 + 3 NA Intergenic Intergenic 9427 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 700-21 chr12 37876611 37876997 + 3 NA Intergenic ALR/Alpha|Satellite|centr -439970 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 585-153 chr7 51858123 51858559 + 3 NA Intergenic HERV16-int|LTR|ERVL -465085 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 507-90 chr14 98309879 98310192 + 3 NA Intergenic MIRb|SINE|MIR -331911 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 494-132 chr2 88508261 88508477 + 3 NA Intergenic AluSx|SINE|Alu -16280 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 946-23 chr7 3247340 3247850 + 3 NA Intergenic AluSg|SINE|Alu -53657 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 538-162 chr3 189776839 189777134 + 3 NA intron (NM_003722, intron 3 of 13) intron (NM_003722, intron 3 of 13) -12673 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 323-382 chr4 149561532 149561653 + 3 NA intron (NM_001363507, intron 10 of 13) L2a|LINE|L2 254251 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 608-148 chr7 70249714 70249989 + 3 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 651376 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 443-183 chr20 52339768 52340026 + 3 NA Intergenic MIRb|SINE|MIR -147912 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 339-515 chr6 168251743 168251923 + 3 NA intron (NR_110870, intron 1 of 4) intron (NR_110870, intron 1 of 4) 8895 NR_110870 101929420 Hs.571211 NR_110870 ENSG00000234647 LOC101929420 - uncharacterized LOC101929420 ncRNA 555-105 chr2 150991851 150992174 + 3 NA Intergenic L1MA5|LINE|L1 269851 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 953-14 chr2 28069816 28070346 + 3 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 73714 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 983-23 chr8 87214720 87215184 + 3 NA intron (NM_173538, intron 5 of 10) THE1B|LTR|ERVL-MaLR 348537 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 494-45 chr11 114652331 114652675 + 3 NA Intergenic MIRb|SINE|MIR -26024 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 931-5 chr14 62298151 62298638 + 3 NA Intergenic Intergenic -158421 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1310-4 chr20 42867808 42868683 + 3 NA intron (NM_133170, intron 2 of 31) MLT1A1-int|LTR|ERVL-MaLR -100498 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 679-14 chr10 60658210 60658609 + 3 NA intron (NM_001204403, intron 1 of 43) L1M4a1|LINE|L1 75119 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 383-345 chr6 137120925 137121093 + 3 NA Intergenic Intergenic 52635 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 628-88 chr3 73695711 73696071 + 3 NA Intergenic Intergenic -70950 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 525-210 chr5 150979182 150979387 + 3 NA Intergenic Intergenic -32700 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 384-222 chr3 60956693 60956844 + 3 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 294684 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 863-25 chr20 31367219 31367675 + 3 NA Intergenic Intergenic -1154 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 475-279 chr8 59084288 59084468 + 3 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 34769 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 602-98 chr4 162668921 162669304 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 424516 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 836-9 chr10 19164095 19164536 + 3 NA intron (NM_001142308, intron 12 of 39) intron (NM_001142308, intron 12 of 39) 115514 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 611-117 chr5 63506018 63506348 + 3 NA Intergenic Intergenic 456109 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1561 chr11 37784154 37785031 + 3 NA Intergenic L1PA11|LINE|L1 -154009 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 341-334 chr3 68058668 68058827 + 3 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 54500 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 341-581 chrX 97878978 97879150 + 3 NA Intergenic Intergenic -314529 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 339-165 chr14 72184460 72184675 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 251040 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 406-266 chr6 164932024 164932313 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -110105 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 426-182 chr3 70257474 70257635 + 3 NA intron (NM_001364676, intron 2 of 4) L1M5|LINE|L1 55084 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 675-12 chr10 61946170 61946608 + 3 NA intron (NM_032199, intron 3 of 9) MamGypsy2-I|LTR|Gypsy 44690 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 652-38 chr14 66816044 66816434 + 3 NA intron (NM_001024218, intron 3 of 21) L1PA13|LINE|L1 308832 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 377-48 chr10 67028767 67028965 + 3 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 16600 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 354-7 chr1 55441230 55441430 + 3 NA Intergenic Intergenic 215689 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 439-157 chr2 229516230 229516395 + 3 NA intron (NM_139072, intron 5 of 12) LTR106_Mam|LTR|LTR 198243 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 844-56 chr6 40029759 40030198 + 3 NA Intergenic Intergenic -95516 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 375-338 chr5 145349863 145350022 + 3 NA Intergenic L2c|LINE|L2 485400 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 591-63 chr19 34778539 34778903 + 3 NA Intergenic MER63C|DNA|hAT-Blackjack -5506 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 480-306 chr8 137041872 137042163 + 3 NA Intergenic Intergenic 371571 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 417-283 chr8 83299229 83299417 + 3 NA Intergenic Intergenic -104435 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 658-35 chr13 68055027 68055376 + 3 NA Intergenic Intergenic 682814 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 491-11 chr1 242539440 242539726 + 3 NA Intergenic Intergenic -14886 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 504-196 chr4 105096450 105096647 + 3 NA Intergenic L1M4|LINE|L1 -49327 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 557-124 chr22 26807452 26807741 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -52615 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 443-60 chr11 115100712 115100891 + 3 NA Intergenic Intergenic -232776 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 522-207 chr5 54926254 54926611 + 3 NA Intergenic L1M4|LINE|L1 59161 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 679-96 chr6 70145349 70145705 + 3 NA intron (NM_001858, intron 25 of 50) L1PA16|LINE|L1 137670 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 1035-2 chr12 15462646 15463189 + 3 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -83694 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 566-18 chr10 122767010 122767305 + 3 NA intron (NR_003570, intron 7 of 27) intron (NR_003570, intron 7 of 27) 10463 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 496-58 chr12 55159331 55159604 + 3 NA Intergenic Intergenic 29698 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 506-37 chr10 48881197 48881535 + 3 NA intron (NM_020945, intron 43 of 61) intron (NM_020945, intron 43 of 61) 32869 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 380-219 chr20 43769744 43769891 + 3 NA Intergenic MIR|SINE|MIR -42815 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 440-35 chr11 40377469 40377667 + 3 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -84438 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 487-184 chr3 46343739 46344055 + 3 NA Intergenic Intergenic -9847 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 498-106 chr17 58856886 58857071 + 3 NA intron (NM_014906, intron 1 of 6) L1MC4|LINE|L1 101109 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 294-205 chr2 42306815 42306938 + 3 NA intron (NM_001145076, intron 16 of 21) MIRb|SINE|MIR 53162 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 492-256 chr8 71311536 71311843 + 3 NA intron (NM_001370336, intron 8 of 17) Tigger10|DNA|TcMar-Tigger 45017 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 344-197 chr18 3454123 3454286 + 3 NA intron (NM_173211, intron 1 of 2) intron (NM_173211, intron 1 of 2) 430 NM_173211 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 560-45 chr13 113661436 113661706 + 3 NA Intergenic L1MD1|LINE|L1 -3373 NM_000705 496 Hs.434202 NM_000705 ENSG00000186009 ATP4B ATP6B ATPase H+/K+ transporting subunit beta protein-coding 463-274 chr7 98914893 98915225 + 3 NA intron (NM_003496, intron 18 of 70) intron (NM_003496, intron 18 of 70) 33362 NR_132754 106633801 NR_132754 SCARNA28 ZL1 small Cajal body-specific RNA 28 ncRNA 427-79 chr15 26183041 26183355 + 3 NA Intergenic Intergenic 67385 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 715-47 chr20 42544835 42545338 + 3 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -140397 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 425-284 chr7 51739031 51739323 + 3 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -345921 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 916-11 chr16 3383582 3384092 + 3 NA intron (NM_001284527, intron 6 of 6) intron (NM_001284527, intron 6 of 6) -11169 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 857-2 chr1 101415809 101416295 + 3 NA Intergenic L1PB1|LINE|L1 92215 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 630-70 chr20 2612982 2613308 + 3 NA intron (NM_080751, intron 13 of 19) intron (NM_080751, intron 13 of 19) -39487 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 531-145 chr22 19651292 19651580 + 3 NA Intergenic L1M4|LINE|L1 -63067 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 399-225 chr4 36987508 36987772 + 3 NA Intergenic L1ME1|LINE|L1 -14139 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 475-130 chr2 70816426 70816719 + 3 NA exon (NM_001258027, exon 4 of 7) exon (NM_001258027, exon 4 of 7) 4027 NM_001258027 165530 Hs.681239 NM_173535 ENSG00000152672 CLEC4F CLECSF13|KCLR C-type lectin domain family 4 member F protein-coding 392-351 chr9 112986224 112986543 + 3 NA Intergenic L1M5|LINE|L1 25809 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 505-194 chr3 70785887 70786097 + 3 NA Intergenic L1MD1|LINE|L1 278932 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 328-543 chr7 97235122 97235264 + 3 NA Intergenic Intergenic 118600 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 941-25 chr6 27409663 27410243 + 3 NA intron (NR_144688, intron 6 of 8) Tigger3|DNA|TcMar-Tigger 21235 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 491-112 chr2 30702996 30703196 + 3 NA Intergenic L1ME1|LINE|L1 104350 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 526-158 chr22 33820239 33820446 + 3 NA intron (NM_001362953, intron 1 of 14) AluJr|SINE|Alu 95356 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 633-2 chr1 73333386 73333634 + 3 NA intron (NR_110676, intron 3 of 3) L1M4b|LINE|L1 27340 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 721-11 chr10 100119414 100119925 + 3 NA Intergenic AluJb|SINE|Alu -37800 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 539-99 chr19 39726849 39727146 + 3 NA Intergenic MIR|SINE|MIR 11032 NM_001828 1178 Hs.889 NM_001828 ENSG00000105205 CLC GAL10|Gal-10|LGALS10|LGALS10A|LPPL_HUMAN Charcot-Leyden crystal galectin protein-coding 492-41 chr11 68429629 68429939 + 3 NA intron (NM_002335, intron 17 of 22) intron (NM_002335, intron 17 of 22) -30968 NR_147965 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 536-182 chr5 15876484 15876827 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -58527 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 411-119 chr17 72769001 72769192 + 3 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -128624 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 511-167 chr3 26280481 26280791 + 3 NA Intergenic Intergenic -342170 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 433-140 chr2 129203393 129203576 + 3 NA Intergenic L1MC3|LINE|L1 70407 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 369-158 chr17 57387423 57387709 + 3 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 130547 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 697-74 chr8 122892664 122893008 + 3 NA intron (NM_001362797, intron 3 of 4) AluSx3|SINE|Alu 111181 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 546-58 chr12 110800798 110801041 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -46068 NM_001286243 160762 Hs.437141 NM_152591 ENSG00000173093 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 273-334 chr4 107230675 107230816 + 3 NA Intergenic L1MA2|LINE|L1 -194432 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 1122-13 chr8 139594829 139595383 + 3 NA Intergenic LTR33|LTR|ERVL 108017 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 251-14 chr1 116045757 116045907 + 3 NA intron (NM_018420, intron 8 of 11) L1MEc|LINE|L1 -65923 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 733-24 chr17 54916136 54916598 + 3 NA intron (NM_001321173, intron 7 of 9) L2c|LINE|L2 15515 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 563-58 chr14 95047860 95048157 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 85495 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 671-44 chr2 88278379 88278634 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 105367 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 343-365 chr3 169639754 169639946 + 3 NA intron (NM_001366473, intron 1 of 15) MLT1I|LTR|ERVL-MaLR 23862 NM_001205194 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 394-169 chr2 60109205 60109418 + 3 NA Intergenic L1MB2|LINE|L1 273725 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 535-191 chr4 166763725 166764083 + 3 NA intron (NM_001204356, intron 6 of 9) MLT1E2|LTR|ERVL-MaLR 470522 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 510-209 chr4 96490709 96490941 + 3 NA intron (NR_147149, intron 2 of 3) MER39|LTR|ERV1 180122 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 466-276 chr8 127103375 127103660 + 3 NA Intergenic Intergenic -21296 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 501-268 chr8 117727432 117727665 + 3 NA Intergenic Intergenic 193365 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 436-236 chr5 27074892 27075203 + 3 NA Intergenic L1PA14|LINE|L1 -36461 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 504-137 chr2 125293401 125293604 + 3 NA Intergenic Intergenic 824483 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 543-169 chr3 81360401 81360724 + 3 NA Intergenic AluJr4|SINE|Alu 366694 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 426-223 chr5 12248186 12248359 + 3 NA Intergenic L1MEf|LINE|L1 -326585 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 555-92 chr2 53650927 53651175 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -116732 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 920-27 chr8 50992947 50993389 + 3 NA Intergenic L1M4|LINE|L1 816277 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 369-84 chr12 45916612 45916805 + 3 NA Intergenic MIRb|SINE|MIR 73866 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 380-249 chr3 90452002 90452235 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1344497 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 534-229 chr6 163095046 163095313 + 3 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -41018 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 501-252 chr8 21287358 21287644 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -10738 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 315-318 chr3 165474840 165475044 + 3 NA intron (NR_125764, intron 3 of 5) L1ME3A|LINE|L1 267982 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 836-18 chr13 25921834 25922351 + 3 NA intron (NM_016529, intron 33 of 36) intron (NM_016529, intron 33 of 36) 128968 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 619-45 chr14 60793042 60793353 + 3 NA intron (NM_001177963, intron 1 of 6) AluJb|SINE|Alu 58436 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 509-31 chr10 119994377 119994573 + 3 NA Intergenic L1PBa|LINE|L1 35962 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 292-310 chr4 40216636 40216767 + 3 NA intron (NM_001278361, intron 2 of 3) MER113A|DNA|hAT-Charlie 19670 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 335-522 chr8 10450312 10450458 + 3 NA Intergenic L1MEg|LINE|L1 -24180 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 436-332 chr9 126026510 126026748 + 3 NA Intergenic Intergenic 249286 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 540-83 chr16 6052227 6052436 + 3 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 32628 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 512-186 chr4 38294424 38294688 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -72358 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 947-19 chr21 20212578 20213202 + 3 NA Intergenic Intergenic 45795 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 580-187 chr7 72107813 72108010 + 3 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 229480 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 414-237 chr4 76475400 76475618 + 3 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 40280 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 633-18 chr11 22960357 22960643 + 3 NA Intergenic Intergenic -100026 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 517-246 chr7 22381622 22381836 + 3 NA Intergenic Intergenic -24575 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 788-38 chr3 171163559 171163876 + 3 NA intron (NM_001161563, intron 10 of 31) intron (NM_001161563, intron 10 of 31) -56958 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 784-20 chr16 52442950 52443261 + 3 NA intron (NM_001146188, intron 7 of 7) intron (NM_001146188, intron 7 of 7) 104038 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 338-71 chr10 81707336 81707505 + 3 NA Intergenic L1M5|LINE|L1 -167774 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 331-528 chr8 77401995 77402179 + 3 NA Intergenic Intergenic -48610 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 555-84 chr2 15880426 15880647 + 3 NA Intergenic Intergenic -39863 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 641-88 chr4 96505562 96505939 + 3 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 195047 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 203-102 chr2 12054122 12054212 + 3 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 47051 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 324-74 chr10 121707363 121707564 + 3 NA Intergenic Intergenic -109005 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 411-292 chr8 103246547 103246805 + 3 NA non-coding (NR_148213, exon 4 of 4) non-coding (NR_148213, exon 4 of 4) -51818 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 381-107 chr14 58958956 58959118 + 3 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 130749 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 404-284 chr7 687130 687302 + 3 NA intron (NM_001164760, intron 2 of 10) L1MEg|LINE|L1 25308 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 472-101 chr15 49765711 49765893 + 3 NA Intergenic L1MB1|LINE|L1 144754 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 351-69 chr11 45676756 45676906 + 3 NA Intergenic Intergenic -11209 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 448-22 chr1 224071767 224071957 + 3 NA Intergenic HAL1|LINE|L1 -42249 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 378-413 chr7 80683344 80683584 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 36811 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 402-220 chr3 153537527 153537807 + 3 NA intron (NR_146713, intron 4 of 6) intron (NR_146713, intron 4 of 6) 53172 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 412-187 chr20 59915385 59915552 + 3 NA exon (NM_014258, exon 9 of 45) exon (NM_014258, exon 9 of 45) 18169 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 535-184 chr4 86651095 86651319 + 3 NA intron (NM_080685, intron 2 of 47) L1MA4|LINE|L1 56892 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 592-132 chr4 161902728 161903115 + 3 NA intron (NM_001128428, intron 4 of 14) intron (NM_001128428, intron 4 of 14) -119812 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 563-103 chr20 15347000 15347342 + 3 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 150331 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 850-19 chr2 85948198 85948592 + 3 NA Intergenic L1MEd|LINE|L1 59115 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 488-229 chr6 8930681 8930858 + 3 NA Intergenic MIRb|SINE|MIR 278560 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 539-109 chr2 58583290 58583526 + 3 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 62655 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 522-35 chr10 129750485 129750771 + 3 NA intron (NM_002412, intron 3 of 4) MER2|DNA|TcMar-Tigger 92746 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 407-50 chr11 63021234 63021450 + 3 NA Intergenic Intergenic -5497 NM_001184736 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 529-86 chr17 52765411 52765826 + 3 NA Intergenic L1PB3|LINE|L1 -96503 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 344-290 chr21 29590797 29590992 + 3 NA intron (NM_000830, intron 10 of 16) intron (NM_000830, intron 10 of 16) -5146 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 1030-20 chr6 53745331 53745886 + 3 NA Intergenic L1ME3Cz|LINE|L1 -49397 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 427-161 chr3 97131009 97131209 + 3 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -308498 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 440-121 chr2 78887018 78887380 + 3 NA Intergenic Intergenic -138503 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 589-16 chr11 43112557 43112892 + 3 NA Intergenic L1MA10|LINE|L1 156645 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 595-138 chr5 146358213 146358451 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 19493 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 779-57 chr8 124824189 124824730 + 3 NA Intergenic MIR|SINE|MIR -2401 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 492-279 chr9 26185816 26186058 + 3 NA Intergenic Intergenic 119262 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 1217-2 chr2 185507720 185508409 + 3 NA Intergenic Intergenic 230655 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 550-121 chr2 148843276 148843553 + 3 NA Intergenic L1PA16|LINE|L1 -31813 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 692-22 chr12 67761512 67761852 + 3 NA Intergenic Intergenic -32207 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 684-26 chr12 38632924 38633504 + 3 NA Intergenic L2|LINE|L2 272377 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 787-13 chr16 73746492 73747060 + 3 NA Intergenic Intergenic 359971 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 509-75 chr14 105123228 105123467 + 3 NA Intergenic L1MB7|LINE|L1 27517 NR_106823 102465458 NR_106823 ENSG00000273778 MIR6765 hsa-mir-6765 microRNA 6765 ncRNA 570-17 chr1 247137466 247137723 + 3 NA TTS (NM_001297567) TTS (NM_001297567) -25177 NM_207401 388759 Hs.456511 NM_207401 C1orf229 - chromosome 1 open reading frame 229 protein-coding 285-98 chr13 37227642 37227801 + 3 NA Intergenic L1ME3B|LINE|L1 -122057 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 591-136 chr5 108488767 108488996 + 3 NA Intergenic L1MA4|LINE|L1 -106783 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 523-186 chr3 134080511 134080717 + 3 NA Intergenic L1MC5a|LINE|L1 -22966 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 268-387 chr8 19383930 19384135 + 3 NA intron (NM_001363110, intron 7 of 8) intron (NM_001363110, intron 7 of 8) 70056 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 393-188 chr2 218279609 218279857 + 3 NA TTS (NR_106768) TTS (NR_106768) 455 NR_106768 102465256 NR_106768 ENSG00000284173 MIR6513 hsa-mir-6513|mir-6513 microRNA 6513 ncRNA 266-182 chr2 86691298 86691454 + 3 NA intron (NM_001198954, intron 1 of 7) L1ME1|LINE|L1 -28915 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 402-164 chr2 126095790 126096035 + 3 NA Intergenic MLT2A1|LTR|ERVL 22073 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 622-16 chr11 91559610 91559886 + 3 NA Intergenic Intergenic -665286 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 198-7 chr1 106816954 106817051 + 3 NA Intergenic LTR84b|LTR|ERVL -1237 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 483-61 chr14 51148620 51148886 + 3 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -53049 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 416-338 chr8 109160591 109160757 + 3 NA Intergenic Intergenic 74046 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 576-53 chr14 86596055 86596379 + 3 NA Intergenic Intergenic -309561 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 384-126 chr15 83644502 83644705 + 3 NA Intergenic Intergenic -9520 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 591-70 chr2 77971052 77971321 + 3 NA intron (NR_110288, intron 1 of 3) (TAATAT)n|Simple_repeat|Simple_repeat -16160 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 355-331 chr3 100102755 100102915 + 3 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 11678 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 634-77 chr2 88362878 88363212 + 3 NA Intergenic L1PB1|LINE|L1 89648 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 788-42 chr5 57748428 57748833 + 3 NA Intergenic Intergenic 97970 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 282-46 chr10 66637079 66637259 + 3 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -288867 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 145-64 chr4 91156306 91156363 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 921303 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 324-550 chr8 127522785 127522926 + 3 NA Intergenic L1ME3D|LINE|L1 -40716 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 881-6 chr12 37985425 37985810 + 3 NA Intergenic ALR/Alpha|Satellite|centr -331157 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 464-258 chr8 100581516 100581761 + 3 NA intron (NM_152628, intron 12 of 13) intron (NM_152628, intron 12 of 13) -21879 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 571-74 chr2 66616182 66616548 + 3 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 42335 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 763-46 chr3 191448854 191449404 + 3 NA intron (NR_120606, intron 1 of 6) L1MA4|LINE|L1 -12034 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 512-203 chr4 181319924 181320219 + 3 NA Intergenic Intergenic -55042 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 499-33 chr10 109707465 109707668 + 3 NA Intergenic AluJb|SINE|Alu 215680 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 466-201 chr5 37520469 37520750 + 3 NA intron (NM_001345998, intron 9 of 17) L1M5|LINE|L1 141291 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 304-544 chr9 29724968 29725115 + 3 NA Intergenic Intergenic -511440 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 543-244 chr8 82294877 82295124 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger -452714 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 422-289 chr7 134596606 134596827 + 3 NA Intergenic L1PREC2|LINE|L1 47606 NR_160302 441282 Hs.729418 NM_001080538 ENSG00000227471 AKR1B15 AKR1B10L|AKR1B10L, AK1R1B7|AKR1R1B7 aldo-keto reductase family 1 member B15 protein-coding 717 chr1 36912794 36913091 + 3 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 121573 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 390-176 chr2 35613721 35613862 + 3 NA Intergenic L1M5|LINE|L1 142386 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 513-194 chr3 184866426 184866701 + 3 NA intron (NM_001009921, intron 15 of 46) intron (NM_001009921, intron 15 of 46) 54056 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 666-42 chr18 3911115 3911567 + 3 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 25988 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 818-35 chr3 59095797 59096178 + 3 NA Intergenic L2b|LINE|L2 -45955 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 162-111 chr6 82509744 82509831 + 3 NA Intergenic Intergenic 145543 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 538-77 chr15 91213762 91213943 + 3 NA intron (NM_001323040, intron 2 of 12) MER113|DNA|hAT-Charlie 112056 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 462-169 chr3 10795750 10795935 + 3 NA Intergenic L1MA9|LINE|L1 -20386 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 642-106 chr8 97475968 97476208 + 3 NA Intergenic L1PA16|LINE|L1 -29591 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 751-49 chr3 177095274 177095716 + 3 NA intron (NM_001321194, intron 2 of 16) intron (NM_001321194, intron 2 of 16) 100983 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 363-417 chr7 53758593 53758824 + 3 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 53223 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 615-89 chr4 3720262 3720510 + 3 NA Intergenic Intergenic -42531 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LINC02171 - long intergenic non-protein coding RNA 2171 ncRNA 231-65 chr12 13514703 13514821 + 3 NA Intergenic L1MB3|LINE|L1 -138017 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 570-118 chr2 187108042 187108309 + 3 NA Intergenic L1MCa|LINE|L1 -259005 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 909-33 chrX 65270236 65270633 + 3 NA Intergenic L1M4|LINE|L1 -218301 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 531-11 chr1 177364191 177364469 + 3 NA intron (NR_126001, intron 3 of 3) L3|LINE|CR1 12744 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 604-108 chr3 76168793 76169081 + 3 NA Intergenic L2c|LINE|L2 -383388 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 368-298 chr3 103204177 103204331 + 3 NA Intergenic Intergenic 319862 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 426-151 chr2 172406323 172406580 + 3 NA Intergenic Intergenic -20885 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 514-189 chr3 97320609 97320801 + 3 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -118902 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 814-64 chr9 24014555 24014934 + 3 NA Intergenic L1ME1|LINE|L1 -164143 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 479-33 chr11 15514507 15514827 + 3 NA Intergenic L1ME2|LINE|L1 -129218 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 756-30 chr2 197056417 197056931 + 3 NA intron (NM_001367496, intron 16 of 27) L1M5|LINE|L1 -129967 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 1055-15 chr4 90931920 90932665 + 3 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 697261 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 487-101 chr15 92244978 92245254 + 3 NA Intergenic Intergenic -148765 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 647-18 chr11 112661950 112662345 + 3 NA Intergenic L2a|LINE|L2 -106345 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 894-15 chr17 73574592 73575121 + 3 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 61173 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 573-47 chr11 133760019 133760231 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 50251 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 444-5 chr1 67089568 67089810 + 3 NA Intergenic L1MEj|LINE|L1 -35541 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 600-34 chr14 58858173 58858565 + 3 NA intron (NR_110547, intron 1 of 5) L1MA4A|LINE|L1 30081 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 197-216 chr8 131331340 131331425 + 3 NA Intergenic Intergenic -290473 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 501-134 chr20 42763216 42763432 + 3 NA intron (NM_133170, intron 5 of 31) Mam_R4|LINE|Dong-R4 77841 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 378-132 chr14 47005216 47005375 + 3 NA intron (NM_001113498, intron 8 of 16) L1ME1|LINE|L1 337951 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 259-364 chr7 15744515 15744620 + 3 NA Intergenic Intergenic 56189 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 545-94 chr17 59359242 59359553 + 3 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) -6686 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 898-22 chr2 41371429 41371944 + 3 NA Intergenic L1PA13|LINE|L1 -505869 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 398-188 chr20 31329814 31330014 + 3 NA Intergenic Intergenic -21329 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 613-82 chr3 79398431 79398812 + 3 NA intron (NM_002941, intron 2 of 30) MER20B|DNA|hAT-Charlie -13106 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 645-30 chr14 59734804 59735089 + 3 NA intron (NM_021136, intron 2 of 8) L1PA11|LINE|L1 -87926 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 295-152 chr15 69221363 69221528 + 3 NA intron (NM_001324092, intron 2 of 3) L1MB3|LINE|L1 60810 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 327-361 chr4 55313113 55313274 + 3 NA Intergenic Intergenic -33049 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 1054-16 chr7 49312177 49312691 + 3 NA Intergenic L1MEc|LINE|L1 387887 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 575-38 chr12 22171329 22171691 + 3 NA Intergenic L1MC4|LINE|L1 125292 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 391-350 chr8 79375008 79375329 + 3 NA Intergenic Intergenic 42980 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 473-9 chr1 100559947 100560147 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 21908 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 546-132 chr21 31472188 31472445 + 3 NA intron (NM_003253, intron 1 of 28) AluSz|SINE|Alu 86771 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 643-26 chr12 97049673 97050087 + 3 NA Intergenic L1MC5a|LINE|L1 142414 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 646-10 chr1 208867205 208867518 + 3 NA Intergenic L2a|LINE|L2 -105093 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 494-224 chr5 37880150 37880361 + 3 NA Intergenic MLT2F|LTR|ERVL 39817 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 470-140 chr2 164177500 164177805 + 3 NA Intergenic Intergenic 390843 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 442-139 chr2 106011455 106011624 + 3 NA Intergenic Intergenic -54149 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 673-76 chr3 68704593 68704975 + 3 NA Intergenic L1PA11|LINE|L1 204147 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 596-61 chr14 56973841 56974187 + 3 NA Intergenic Intergenic 160856 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 506-118 chr19 37245980 37246272 + 3 NA 3' UTR (NM_001345947, exon 5 of 5) 3' UTR (NM_001345947, exon 5 of 5) -5759 NR_110719 101927667 Hs.633102 NR_110718 ENSG00000226686 LINC01535 - long intergenic non-protein coding RNA 1535 ncRNA 404-238 chr4 105617165 105617352 + 3 NA intron (NM_001242729, intron 3 of 13) BLACKJACK|DNA|hAT-Blackjack 55667 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 665-6 chr1 200195200 200195708 + 3 NA Intergenic Intergenic 152629 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 1039-19 chr6 12709981 12710482 + 3 NA Intergenic Intergenic -6536 NM_030948 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 399-117 chr17 54601943 54602186 + 3 NA Intergenic L1MEf|LINE|L1 -298627 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 446-70 chr12 2708354 2708578 + 3 NA Intergenic L1MB2|LINE|L1 -17309 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 813-28 chr3 81126390 81126851 + 3 NA Intergenic L1M2|LINE|L1 132752 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 403-36 chr10 111024285 111024487 + 3 NA Intergenic L1MD3|LINE|L1 35460 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 434-27 chr1 226213446 226213692 + 3 NA Intergenic AluJo|SINE|Alu -10095 NM_001282402 83881 Hs.282079 NM_031944 ENSG00000185155 MIXL1 MILD1|MIX|MIXL Mix paired-like homeobox protein-coding 469-129 chr2 58627345 58627503 + 3 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 106671 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 259-216 chr2 167078245 167078351 + 3 NA intron (NM_152381, intron 2 of 10) L1P4|LINE|L1 62657 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 863-12 chr15 26916806 26917300 + 3 NA intron (NM_001165037, intron 7 of 10) L1M3d|LINE|L1 49927 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 128-88 chrX 50923547 50923640 + 3 NA Intergenic L1MC2|LINE|L1 12858 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 324-188 chr15 91311643 91311840 + 3 NA Intergenic MIRb|SINE|MIR -151598 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 590-145 chr6 68162662 68163073 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity 107516 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 469-298 chr9 77055304 77055556 + 3 NA Intergenic Intergenic 35775 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 424-233 chr5 163175382 163175687 + 3 NA Intergenic Intergenic -262037 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 334-339 chr3 41475090 41475271 + 3 NA intron (NR_136342, intron 30 of 34) L1MA7|LINE|L1 275675 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 535-26 chr10 48827010 48827409 + 3 NA intron (NM_020945, intron 36 of 61) intron (NM_020945, intron 36 of 61) 87026 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 527-283 chr9 93762037 93762324 + 3 NA Intergenic Intergenic -57177 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 292-181 chr18 13596817 13596974 + 3 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -14219 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 653-87 chr3 102310371 102310720 + 3 NA Intergenic L1MA3|LINE|L1 -124470 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 413-266 chr6 62081860 62082093 + 3 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 204249 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 343-251 chr2 82865458 82865658 + 3 NA Intergenic Intergenic 8755 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 496-242 chr6 136987391 136987563 + 3 NA intron (NR_027994, intron 2 of 2) Tigger15a|DNA|TcMar-Tigger 5754 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 538-83 chr16 66190691 66191086 + 3 NA Intergenic L1MA8|LINE|L1 -175803 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 298-113 chr14 36028834 36029015 + 3 NA Intergenic Intergenic -41503 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 538-106 chr2 29501252 29501450 + 3 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) -25974 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 414-34 chr10 105733954 105734138 + 3 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 86287 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 502-200 chr4 71586336 71586664 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 197579 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 282-103 chr12 98978810 98978954 + 3 NA intron (NM_152788, intron 17 of 25) AluY|SINE|Alu -83591 NM_001352209 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 342-388 chr5 27653758 27653935 + 3 NA Intergenic L1M4|LINE|L1 181554 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 436-29 chr10 33968549 33968862 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -196025 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 475-139 chr2 114246872 114247071 + 3 NA Intergenic Intergenic -195670 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 334-381 chr4 80704591 80704816 + 3 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -326005 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 1062-19 chr5 179300824 179301332 + 3 NA intron (NM_014244, intron 2 of 21) intron (NM_014244, intron 2 of 21) 44383 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 501-286 chrX 77751847 77752058 + 3 NA intron (NM_000489, intron 1 of 34) L1PA8|LINE|L1 34264 NM_138270 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 525-202 chr5 102067498 102067790 + 3 NA Intergenic Intergenic 228640 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 358-437 chr7 51829803 51830002 + 3 NA Intergenic L1ME3A|LINE|L1 -436646 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 547-47 chr12 26321493 26321887 + 3 NA Intergenic Tigger17c|DNA|TcMar-Tigger 126117 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 582-151 chr8 62897183 62897380 + 3 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -80580 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 585-28 chr12 20340980 20341278 + 3 NA Intergenic Intergenic -28116 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 749-6 chr1 181215802 181216313 + 3 NA Intergenic AluJb|SINE|Alu -20331 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 328-461 chr5 99917697 99917835 + 3 NA Intergenic L1MEc|LINE|L1 383776 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 453-6 chr1 59194036 59194228 + 3 NA Intergenic L2a|LINE|L2 -47325 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 472-164 chr2 115259582 115259929 + 3 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -49482 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 240-211 chr2 56407692 56407851 + 3 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -222001 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 496-283 chr8 77671741 77672087 + 3 NA Intergenic Intergenic 221217 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 571-123 chr4 88364875 88365124 + 3 NA Intergenic MER11A|LTR|ERVK -13740 NM_001165136 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 314-315 chr2 186919782 186920049 + 3 NA Intergenic Intergenic -70745 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 436-336 chrX 42845188 42845468 + 3 NA Intergenic L1M7|LINE|L1 -67165 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 480-149 chr2 80772152 80772425 + 3 NA Intergenic Intergenic 458909 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 411-200 chr4 30580815 30581010 + 3 NA Intergenic Intergenic -139457 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 253-235 chr21 28123941 28124055 + 3 NA intron (NR_126012, intron 5 of 5) intron (NR_126012, intron 5 of 5) 33595 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 448-300 chr9 96834563 96834721 + 3 NA intron (NM_001346995, intron 2 of 3) MSTA1|LTR|ERVL-MaLR 19872 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 294-430 chr7 28984692 28984868 + 3 NA intron (NR_038965, intron 1 of 4) intron (NR_038965, intron 1 of 4) 4813 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 729-32 chr2 189323 189686 + 3 NA Intergenic Intergenic 66836 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 448-70 chr12 130449018 130449299 + 3 NA intron (NM_001351226, intron 9 of 21) LTR82A|LTR|ERVL 111271 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 281-204 chr2 51573964 51574131 + 3 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 541446 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 845 chr1 66899615 66900034 + 3 NA intron (NM_024763, intron 2 of 16) L1MB7|LINE|L1 25032 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 261-282 chr4 70327546 70327666 + 3 NA Intergenic Intergenic -7375 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 620-153 chr9 86018721 86019150 + 3 NA intron (NM_024635, intron 21 of 22) intron (NM_024635, intron 21 of 22) 77406 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 790-12 chr13 47388142 47388519 + 3 NA Intergenic L1MA3|LINE|L1 -491254 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 531-28 chr10 106687857 106688072 + 3 NA intron (NM_001206569, intron 10 of 25) intron (NM_001206569, intron 10 of 25) 476742 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 444-160 chr3 153639722 153639882 + 3 NA intron (NR_146713, intron 3 of 6) intron (NR_146713, intron 3 of 6) 122724 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 774-35 chr18 12565084 12565535 + 3 NA intron (NM_020148, intron 2 of 15) L1MCa|LINE|L1 91423 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 651-115 chr8 81564231 81564561 + 3 NA Intergenic L1MA3|LINE|L1 -33006 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 357-107 chr14 36970067 36970244 + 3 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -17764 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 398-353 chr8 82913426 82913615 + 3 NA intron (NR_134295, intron 2 of 3) LTR33C|LTR|ERVL 1416 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 443-2 chr1 43635994 43636255 + 3 NA Intergenic Intergenic -14025 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 390-359 chr7 81000469 81000649 + 3 NA Intergenic Intergenic -78170 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 221-166 chr20 48130786 48130936 + 3 NA Intergenic L1MC|LINE|L1 -140744 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 659-9 chr10 23272750 23273139 + 3 NA intron (NM_001365862, intron 8 of 15) L1MEd|LINE|L1 -71013 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 611-112 chr4 141738186 141738477 + 3 NA Intergenic L1MA8|LINE|L1 101748 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 499-4 chr1 55713479 55713658 + 3 NA Intergenic Intergenic 231395 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 462-87 chr14 86219831 86220060 + 3 NA Intergenic Intergenic 285267 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 412-92 chr14 56904277 56904519 + 3 NA intron (NR_029385, intron 3 of 3) intron (NR_029385, intron 3 of 3) 91240 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 454-310 chr8 80115212 80115471 + 3 NA intron (NM_001025253, intron 1 of 7) intron (NM_001025253, intron 1 of 7) -34510 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 550-246 chr9 107918081 107918403 + 3 NA Intergenic Intergenic -428473 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 496-43 chr10 126151235 126151555 + 3 NA intron (NM_001288974, intron 4 of 18) L1MEd|LINE|L1 -178122 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 363-220 chr2 104283681 104283880 + 3 NA Intergenic Intergenic 124552 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 312-521 chr8 92976959 92977116 + 3 NA Intergenic L1MEc|LINE|L1 -10893 NM_001171799 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 604-88 chr2 122839849 122840133 + 3 NA Intergenic LOR1-int|LTR|ERV1 233490 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 519-175 chr5 51102757 51103087 + 3 NA Intergenic Intergenic -132735 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 561-34 chr11 37925414 37925710 + 3 NA Intergenic Intergenic -13039 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 452-162 chr22 47252260 47252524 + 3 NA Intergenic Intergenic -93179 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 895-29 chr3 193953455 193953919 + 3 NA Intergenic L1MA5|LINE|L1 40551 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 489-3 chr1 36790644 36790820 + 3 NA Intergenic MIRc|SINE|MIR 243783 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 1064-6 chr2 66848529 66849084 + 3 NA Intergenic MER20|DNA|hAT-Charlie -55630 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 898-18 chr18 9448785 9449423 + 3 NA Intergenic LTR47A2|LTR|ERVL -26409 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 359-197 chr18 8596901 8597075 + 3 NA Intergenic Intergenic -12457 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 709-69 chr4 80696578 80696978 + 3 NA intron (NM_001206997, intron 4 of 6) L2c|LINE|L2 -333930 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 321-219 chr16 64304254 64304448 + 3 NA Intergenic Intergenic 817712 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 347-521 chr8 108254768 108254972 + 3 NA Intergenic L2a|LINE|L2 -6153 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 684-105 chr5 145145821 145146242 + 3 NA Intergenic Intergenic 689311 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 742-31 chr16 82556152 82556582 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -70602 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 439-277 chr8 33301589 33301841 + 3 NA Intergenic L1PBa|LINE|L1 171431 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 1514-3 chr2 190539348 190540232 + 3 NA Intergenic L1MA4|LINE|L1 -5068 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 627-40 chr17 71919492 71919845 + 3 NA Intergenic (GAGATA)n|Simple_repeat|Simple_repeat 106311 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 452-156 chr20 56852657 56852932 + 3 NA Intergenic MIR|SINE|MIR 223488 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 372-376 chr4 115457116 115457257 + 3 NA Intergenic Intergenic -343566 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 361-426 chr7 151522239 151522400 + 3 NA Intergenic Intergenic -2424 NM_005614 6009 Hs.283521 NM_005614 ENSG00000106615 RHEB RHEB2 Ras homolog, mTORC1 binding protein-coding 736-13 chr10 91642252 91642649 + 3 NA Intergenic L2c|LINE|L2 -9379 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 719-34 chr18 64460742 64461194 + 3 NA Intergenic L1MD3|LINE|L1 -200913 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 528-216 chr5 166931923 166932208 + 3 NA Intergenic L1MC3|LINE|L1 -5695 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 590-139 chr5 123885961 123886327 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 340727 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 575-50 chr14 62549431 62549813 + 3 NA Intergenic L1PA13|LINE|L1 -409649 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 243-351 chr5 27302767 27302871 + 3 NA Intergenic Intergenic -169473 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 279-306 chr5 3466277 3466404 + 3 NA intron (NR_033898, intron 2 of 4) L1ME1|LINE|L1 13524 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 349-113 chr12 15378679 15378843 + 3 NA intron (NM_030667, intron 1 of 26) L1MB7|LINE|L1 56253 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 406-182 chr3 27307555 27307763 + 3 NA intron (NM_152534, intron 12 of 38) intron (NM_152534, intron 12 of 38) 61724 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 712-2 chr1 102486924 102487190 + 3 NA Intergenic L1M1|LINE|L1 -489823 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 637-120 chr8 131194400 131194743 + 3 NA Intergenic L1MEc|LINE|L1 -153662 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 529-175 chr5 80310676 80310957 + 3 NA Intergenic L1MC4a|LINE|L1 -9186 NM_032567 84654 Hs.519403 NM_032567 ENSG00000164299 SPZ1 CILD38|NYD-TSP1|PPP1R148 spermatogenic leucine zipper 1 protein-coding 488-130 chr2 34518796 34518968 + 3 NA Intergenic L1ME3|LINE|L1 -158675 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 557-40 chr12 2712833 2713040 + 3 NA Intergenic Intergenic -21779 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 587-70 chr2 58364020 58364352 + 3 NA Intergenic Intergenic 88309 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 230-252 chr4 5559662 5559773 + 3 NA Intergenic L1MC3|LINE|L1 34561 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 827-22 chr2 75249760 75250265 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -50492 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 566-166 chr6 69806124 69806469 + 3 NA Intergenic Intergenic -9286 NM_018368 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 428-315 chr9 75477024 75477227 + 3 NA Intergenic Intergenic 388611 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 753-7 chr10 30989722 30990110 + 3 NA intron (NM_001143766, intron 1 of 7) HAL1M8|LINE|L1 9601 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 592-9 chr1 218582630 218582994 + 3 NA intron (NR_031644, intron 2 of 6) L1ME2|LINE|L1 72717 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 480-295 chr8 88934501 88934719 + 3 NA Intergenic L1PREC2|LINE|L1 -607127 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 728-51 chr2 145943401 145943732 + 3 NA Intergenic L1MA9|LINE|L1 -643491 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 660-73 chr4 108310686 108311003 + 3 NA Intergenic LTR1E|LTR|ERV1 138724 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 553-178 chr4 93806219 93806553 + 3 NA Intergenic Intergenic -22367 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 409-23 chr10 41819226 41819399 + 3 NA Intergenic ALR/Alpha|Satellite|centr 548733 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 407-137 chr2 51437340 51437559 + 3 NA intron (NR_135237, intron 4 of 10) L1MC2|LINE|L1 404848 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 318-171 chr14 65598025 65598189 + 3 NA intron (NM_178156, intron 2 of 9) AluJo|SINE|Alu 127005 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 401-73 chr13 56079616 56079832 + 3 NA Intergenic Intergenic 905270 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 382-244 chr21 32115893 32116160 + 3 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -29731 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 621-136 chr8 132275096 132275397 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -169981 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 464-224 chr6 148807345 148807607 + 3 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 60446 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 1076-3 chr1 179406397 179407002 + 3 NA intron (NR_073544, intron 11 of 25) L1M2|LINE|L1 40655 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 304-21 chr1 158320935 158321103 + 3 NA Intergenic L1M1|LINE|L1 10512 NM_001764 910 Hs.1310 NM_001764 ENSG00000158485 CD1B CD1|CD1A|R1 CD1b molecule protein-coding 687-35 chr14 53480050 53480358 + 3 NA Intergenic MER102c|DNA|hAT-Charlie 326850 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 517-32 chr10 41819587 41819898 + 3 NA Intergenic ALR/Alpha|Satellite|centr 548303 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 378-10 chr1 66398353 66398498 + 3 NA Intergenic Intergenic 43890 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 886-20 chr2 196008184 196008615 + 3 NA intron (NM_018897, intron 10 of 64) L1MB7|LINE|L1 60438 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 396-190 chr20 18110641 18110828 + 3 NA Intergenic L1MC1|LINE|L1 -27129 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 cytochrome c oxidase chaperone protein-coding 390-45 chr10 106891249 106891480 + 3 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 273342 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 605-36 chr16 50530979 50531310 + 3 NA Intergenic Intergenic -17252 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 562-220 chr8 107665204 107665401 + 3 NA Intergenic Intergenic -167384 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 359-445 chr7 25982968 25983123 + 3 NA Intergenic Intergenic -33059 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 552-60 chr14 57054532 57054758 + 3 NA Intergenic L2c|LINE|L2 214260 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 412-12 chr1 166173668 166173883 + 3 NA Intergenic MIRb|SINE|MIR -7020 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 794-29 chr3 24997720 24998156 + 3 NA intron (NM_001290216, intron 2 of 10) L1ME3Cz|LINE|L1 168615 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 204-310 chr9 117682675 117682768 + 3 NA Intergenic Intergenic -21682 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 1062-3 chr12 15480650 15481254 + 3 NA intron (NM_030667, intron 1 of 26) L1MEb|LINE|L1 -65659 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 527-191 chr4 71433920 71434324 + 3 NA intron (NM_003759, intron 4 of 22) L1ME3Cz|LINE|L1 95069 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 718-90 chr8 54900925 54901286 + 3 NA Intergenic L1MEc|LINE|L1 -200923 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 677-27 chr14 45027449 45027817 + 3 NA intron (NR_131765, intron 9 of 19) AluJb|SINE|Alu -56483 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 766-39 chr2 162573363 162573923 + 3 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -195293 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 459-19 chr1 197730050 197730270 + 3 NA intron (NR_125340, intron 2 of 19) intron (NR_125340, intron 2 of 19) 45320 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 518-159 chr20 24594897 24595129 + 3 NA intron (NM_024893, intron 3 of 3) L1PA15|LINE|L1 125052 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 309-173 chr15 54507609 54507799 + 3 NA intron (NM_001329919, intron 22 of 31) intron (NM_001329919, intron 22 of 31) 495056 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 834-11 chr14 72337769 72338155 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -178858 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 497-225 chr5 39702892 39703167 + 3 NA Intergenic Intergenic 182598 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 937-29 chr8 89286008 89286415 + 3 NA Intergenic Intergenic 471500 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 466-160 chr21 27257577 27257765 + 3 NA Intergenic Intergenic -290583 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 586-148 chr8 28355071 28355418 + 3 NA intron (NM_018660, intron 4 of 9) intron (NM_018660, intron 4 of 9) 16597 NM_001284244 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 548-227 chr8 33279493 33279753 + 3 NA Intergenic Intergenic 193523 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 591-59 chr18 22677120 22677564 + 3 NA Intergenic MER110-int|LTR|ERV1 109495 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 524-160 chr3 190692303 190692623 + 3 NA Intergenic Intergenic 170231 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 703-62 chr4 8719168 8719560 + 3 NA Intergenic L1MEc|LINE|L1 126599 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 433-302 chr9 81485358 81485651 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 204031 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 331-64 chr10 81577071 81577199 + 3 NA Intergenic L1MB8|LINE|L1 -298059 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 462-2 chr1 48857896 48858147 + 3 NA intron (NR_136623, intron 5 of 12) L1MB7|LINE|L1 -81052 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 497-132 chr2 107124180 107124526 + 3 NA Intergenic Intergenic 225172 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 706-43 chr2 150433502 150433974 + 3 NA Intergenic Intergenic 53957 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 495-114 chr2 114204809 114205086 + 3 NA Intergenic Intergenic -224963 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 475-45 chr11 94310922 94311157 + 3 NA Intergenic MER89|LTR|ERV1 5402 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 324-121 chr12 72150096 72150263 + 3 NA Intergenic L2a|LINE|L2 -122570 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 886-28 chr5 28907391 28907749 + 3 NA Intergenic Intergenic -19300 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 494-172 chr3 56943102 56943285 + 3 NA intron (NR_046572, intron 2 of 2) Tigger1|DNA|TcMar-Tigger 3153 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 345-81 chr10 130414507 130414747 + 3 NA Intergenic L1MEc|LINE|L1 278218 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 710-55 chr21 30389505 30389925 + 3 NA Intergenic Intergenic -6316 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 326-414 chr5 65161716 65161911 + 3 NA intron (NR_135689, intron 25 of 25) intron (NR_135689, intron 25 of 25) 320107 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 1183 chr14 69868545 69869209 + 3 NA Intergenic Looper|DNA|PiggyBac -10539 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 501-128 chr2 232964036 232964260 + 3 NA intron (NM_019850, intron 3 of 14) L1ME3|LINE|L1 -35997 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 775-7 chr1 211085465 211085830 + 3 NA intron (NM_002238, intron 4 of 10) intron (NM_002238, intron 4 of 10) 47727 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 980-19 chr8 137353470 137354090 + 3 NA Intergenic L1PA14|LINE|L1 59808 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 522-52 chr11 91820997 91821265 + 3 NA Intergenic Intergenic -403903 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 618-80 chr3 27243125 27243524 + 3 NA intron (NM_199347, intron 24 of 24) intron (NM_199347, intron 24 of 24) -26801 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 348-557 chr9 79405921 79406178 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -165724 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 470-81 chr15 56222094 56222342 + 3 NA intron (NM_001370561, intron 4 of 11) L1MEf|LINE|L1 21661 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 452-11 chr1 118575050 118575344 + 3 NA Intergenic L1M4|LINE|L1 -389969 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 940-17 chr22 34014586 34015127 + 3 NA Intergenic L1MCb|LINE|L1 -91968 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 841-36 chr6 50638428 50638854 + 3 NA Intergenic Intergenic -74903 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 863-54 chrX 100029005 100029568 + 3 NA Intergenic L1M5|LINE|L1 380987 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 418-242 chr6 101900591 101900757 + 3 NA intron (NM_001166247, intron 11 of 16) intron (NM_001166247, intron 11 of 16) 501689 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 463-186 chr3 73895088 73895354 + 3 NA Intergenic Intergenic 85977 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 280-291 chr4 84057856 84058028 + 3 NA intron (NR_125909, intron 7 of 8) L4_A_Mam|LINE|RTE-X 241227 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 280-242 chr22 24900209 24900356 + 3 NA intron (NM_001098498, intron 18 of 23) AluJb|SINE|Alu 46413 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 467-101 chr16 76551125 76551392 + 3 NA intron (NR_136213, intron 21 of 23) AluSz6|SINE|Alu -83740 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 866-7 chr10 31431348 31431753 + 3 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -31795 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 537-225 chr7 7484386 7484697 + 3 NA intron (NM_001037763, intron 13 of 34) L1MEd|LINE|L1 51332 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 788-45 chr6 140703773 140704142 + 3 NA Intergenic AluSx1|SINE|Alu 20143 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 771-78 chr7 4569572 4569978 + 3 NA Intergenic Intergenic -112520 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 549-150 chr4 59202888 59203201 + 3 NA Intergenic Intergenic 189471 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1184-2 chr10 84395964 84396597 + 3 NA intron (NM_018999, intron 3 of 10) L1MC4a|LINE|L1 -28659 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 539-118 chr2 108262876 108263133 + 3 NA intron (NM_001008743, intron 6 of 7) PABL_A|LTR|ERV1 23036 NM_001008743 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 389-316 chr6 52607012 52607189 + 3 NA Intergenic Intergenic 29802 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 605-128 chr9 75591937 75592208 + 3 NA Intergenic Intergenic -298572 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 211-26 chr10 29044775 29044876 + 3 NA Intergenic Intergenic 198417 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 1057-6 chr18 3980618 3981367 + 3 NA intron (NR_102696, intron 1 of 4) intron (NR_102696, intron 1 of 4) 18639 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 781-26 chr16 77334262 77334610 + 3 NA intron (NM_199355, intron 12 of 22) (TATATAG)n|Simple_repeat|Simple_repeat 100598 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 951-14 chr2 15313009 15313601 + 3 NA intron (NR_052013, intron 38 of 50) intron (NR_052013, intron 38 of 50) 248029 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 585-132 chr5 167492977 167493462 + 3 NA intron (NM_001122679, intron 3 of 29) AluJo|SINE|Alu -80440 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 682-49 chr2 59379344 59379699 + 3 NA Intergenic L1MA4A|LINE|L1 161813 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 247-340 chr5 131984234 131984324 + 3 NA intron (NM_015256, intron 9 of 20) intron (NM_015256, intron 9 of 20) 27379 NM_015256 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 433-100 chr15 86824188 86824469 + 3 NA intron (NM_152336, intron 23 of 24) L1MD|LINE|L1 -108552 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 594 chr1 15320341 15320632 + 3 NA intron (NM_052929, intron 10 of 30) L1MEg|LINE|L1 23397 NR_148919 101927417 Hs.715313 NR_148918 ENSG00000233485 LOC101927417 - uncharacterized LOC101927417 ncRNA 472-9 chr1 74043731 74043998 + 3 NA intron (NM_001105659, intron 6 of 7) intron (NM_001105659, intron 6 of 7) 154312 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 482-290 chr9 11505608 11505785 + 3 NA Intergenic L1ME1|LINE|L1 892490 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 707-76 chr4 150559558 150559888 + 3 NA intron (NM_001367550, intron 40 of 56) (AT)n|Simple_repeat|Simple_repeat -19366 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 210-180 chr3 116433792 116433923 + 3 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 11630 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 282-61 chr10 131229614 131229803 + 3 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 82013 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 869-3 chr1 168159841 168160363 + 3 NA Intergenic L1MA5A|LINE|L1 -18860 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 534-58 chr12 3597009 3597354 + 3 NA Intergenic Intergenic -104362 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 449-23 chr10 10310546 10310765 + 3 NA Intergenic Intergenic 151694 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 445-29 chr11 2648952 2649224 + 3 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 50910 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 514-245 chr5 178922381 178922579 + 3 NA intron (NM_030613, intron 4 of 4) intron (NM_030613, intron 4 of 4) -18718 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 503-63 chr11 116583293 116583555 + 3 NA Intergenic Intergenic -55998 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 308-163 chr15 83477276 83477413 + 3 NA intron (NM_003027, intron 1 of 8) intron (NM_003027, intron 1 of 8) -13270 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 500-93 chr15 27729850 27730033 + 3 NA Intergenic MER21C|LTR|ERVL 369374 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 1351 chr12 60732900 60733523 + 3 NA Intergenic L1PA13|LINE|L1 1043841 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 668-100 chr7 141426703 141427130 + 3 NA intron (NM_001195278, intron 2 of 3) L1MA8|LINE|L1 -124494 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 1093-14 chr9 113019895 113020551 + 3 NA Intergenic L1M4b|LINE|L1 -8031 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 513-34 chr10 92861397 92861651 + 3 NA intron (NM_001319195, intron 1 of 21) L1M4b|LINE|L1 13004 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 575-37 chr12 18058896 18059211 + 3 NA Intergenic L1MB1|LINE|L1 31140 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 549-153 chr4 104937998 104938240 + 3 NA Intergenic L1MD1|LINE|L1 -207756 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 488-102 chr17 12594826 12595065 + 3 NA intron (NR_034145, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 44977 NR_034145 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 504-22 chr10 41737261 41737547 + 3 NA Intergenic ALR/Alpha|Satellite|centr 630641 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 918-2 chr10 96174614 96175227 + 3 NA intron (NR_138482, intron 3 of 4) MLT1A|LTR|ERVL-MaLR 44298 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 613-16 chr10 83928655 83929047 + 3 NA Intergenic Intergenic -210658 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 772-24 chr16 78591241 78591706 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 491819 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 812-13 chr12 60779494 60780023 + 3 NA Intergenic L1PA10|LINE|L1 1090388 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 593-75 chr2 107215361 107215681 + 3 NA intron (NR_049853, intron 2 of 3) MER57B2|LTR|ERV1 134004 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 829-32 chr5 68591580 68591958 + 3 NA Intergenic Charlie25|DNA|hAT-Charlie 299192 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 691-72 chr6 34004933 34005255 + 3 NA Intergenic L1MEd|LINE|L1 -5043 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 552-170 chr5 18884713 18885013 + 3 NA Intergenic L1ME1|LINE|L1 1001409 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 692-59 chr21 17133794 17134322 + 3 NA Intergenic L1PA16|LINE|L1 -304832 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 474-116 chr18 12834044 12834425 + 3 NA intron (NM_080423, intron 3 of 8) AluSx1|SINE|Alu 6728 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 648-81 chr20 57537361 57537767 + 3 NA Intergenic Intergenic -11912 NM_001269051 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 402-221 chr3 168734384 168734551 + 3 NA intron (NR_021485, intron 6 of 15) L1MA4|LINE|L1 -167478 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 458-214 chr5 164819699 164819974 + 3 NA Intergenic Intergenic 349557 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 186-145 chr7 8940224 8940305 + 3 NA Intergenic L2a|LINE|L2 506655 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 527-202 chr5 13672599 13672887 + 3 NA Intergenic Intergenic 271737 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 929-33 chr8 88872795 88873220 + 3 NA Intergenic Intergenic -545524 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 417-314 chrX 58374023 58374261 + 3 NA Intergenic ALR/Alpha|Satellite|centr -463509 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 392-113 chr17 61116262 61116575 + 3 NA intron (NM_001330413, intron 23 of 25) L1MDa|LINE|L1 251286 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 441-88 chr15 66950185 66950476 + 3 NA intron (NR_135687, intron 1 of 2) MER57B2|LTR|ERV1 6185 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 515-180 chr4 52809003 52809333 + 3 NA intron (NR_040106, intron 4 of 4) L1MD|LINE|L1 19174 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 312-173 chr16 13150058 13150180 + 3 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 248521 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 1061-17 chr9 27942478 27943032 + 3 NA 3' UTR (NM_001258282, exon 7 of 7) 3' UTR (NM_001258282, exon 7 of 7) -368889 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 429-101 chr15 65615034 65615302 + 3 NA intron (NM_001301033, intron 2 of 11) AluJo|SINE|Alu 3818 NM_001301033 9187 Hs.173092 NM_004727 ENSG00000074621 SLC24A1 CSNB1D|HsT17412|NCKX|NCKX1|RODX solute carrier family 24 member 1 protein-coding 487-255 chr6 146377420 146377627 + 3 NA intron (NM_001278065, intron 6 of 9) THE1B-int|LTR|ERVL-MaLR -166310 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 765-31 chr2 158405429 158405888 + 3 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 51095 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 427-240 chr7 29992905 29993125 + 3 NA Intergenic Intergenic -2726 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 365-398 chr8 81935410 81935593 + 3 NA Intergenic Intergenic -93215 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 522-124 chr2 28177964 28178236 + 3 NA intron (NR_120504, intron 1 of 2) L1MA4A|LINE|L1 28861 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 467-308 chrX 122132695 122132984 + 3 NA Intergenic Intergenic 761867 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 358-75 chr11 86231677 86231875 + 3 NA Intergenic Intergenic -12608 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED COGIS|HEED|WAIT1 embryonic ectoderm development protein-coding 1012-13 chr5 131864481 131864998 + 3 NA intron (NM_001303622, intron 9 of 12) L1M2|LINE|L1 -67722 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 410-18 chr1 183357540 183357685 + 3 NA intron (NM_015039, intron 1 of 10) L1PA13|LINE|L1 -52738 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 759-25 chr14 86370323 86370804 + 3 NA Intergenic AluJb|SINE|Alu 435885 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 1275-5 chr22 34915268 34916030 + 3 NA intron (NR_138042, intron 1 of 4) MIR|SINE|MIR 82267 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 487-56 chr11 38810442 38810616 + 3 NA Intergenic MER115|DNA|hAT-Tip100 161671 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 1346-5 chr8 129361157 129361875 + 3 NA intron (NR_130920, intron 3 of 3) intron (NR_130920, intron 3 of 3) -120276 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 428-222 chr4 184076651 184076820 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 141138 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 918-13 chr2 21166438 21166938 + 3 NA Intergenic L1M5|LINE|L1 42702 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 401-184 chr2 238219718 238220037 + 3 NA Intergenic AluSx|SINE|Alu 11800 NR_026926 151174 Hs.424165 NR_026925 ENSG00000186235 LINC02610 - long intergenic non-protein coding RNA 2610 ncRNA 904-22 chr18 9338541 9338876 + 3 NA intron (NM_020648, intron 2 of 4) intron (NM_020648, intron 2 of 4) 3935 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 401-146 chr19 37802899 37803120 + 3 NA Intergenic Intergenic -14402 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 656-28 chr11 75112527 75112814 + 3 NA Intergenic L1MDa|LINE|L1 -15780 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 891-13 chr14 71197063 71197596 + 3 NA Intergenic Intergenic -123147 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 470-144 chr2 185769404 185769584 + 3 NA intron (NM_173651, intron 13 of 22) L1PREC2|LINE|L1 -29017 NR_110217 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 517-260 chr8 61818986 61819255 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -70719 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 340-428 chr5 3623714 3623931 + 3 NA Intergenic Intergenic 27990 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 456-218 chr4 23463247 23463468 + 3 NA Intergenic L1MA8|LINE|L1 417935 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 1185-7 chr5 101520816 101521547 + 3 NA Intergenic Intergenic -617899 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 595-22 chr10 117028999 117029422 + 3 NA intron (NM_001258300, intron 2 of 17) MSTA-int|LTR|ERVL-MaLR -23633 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 419-104 chr16 47118270 47118574 + 3 NA intron (NM_001201477, intron 6 of 8) L1ME1|LINE|L1 25523 NM_001201477 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 267-5 chr1 49677256 49677452 + 3 NA intron (NR_136623, intron 2 of 12) L1MDa|LINE|L1 -205269 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 718-84 chr7 3501790 3502240 + 3 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 200763 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 258-420 chr9 27238234 27238374 + 3 NA Intergenic L1MA8|LINE|L1 44489 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 533-204 chr6 148181548 148181885 + 3 NA Intergenic Intergenic -90612 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 339-202 chr16 76806105 76806227 + 3 NA Intergenic Intergenic -62770 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 683-51 chr3 21498211 21498491 + 3 NA intron (NM_024697, intron 4 of 7) L1PA15|LINE|L1 -44438 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 768-51 chr8 46163218 46163613 + 3 NA Intergenic ALR/Alpha|Satellite|centr 454228 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 817-37 chr3 144356840 144357212 + 3 NA Intergenic L1ME2|LINE|L1 383945 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 453-164 chr3 82795254 82795432 + 3 NA Intergenic Intergenic 809201 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 551-163 chr5 104237544 104237872 + 3 NA Intergenic L2|LINE|L2 -674919 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 565-14 chr10 43621168 43621459 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -7504 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 597-104 chr5 6994583 6994947 + 3 NA Intergenic Intergenic -166844 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 640-126 chr7 106351325 106351642 + 3 NA Intergenic L1MEc|LINE|L1 -66500 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 260-457 chr9 77688366 77688522 + 3 NA Intergenic L1MD1|LINE|L1 -40122 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 585-17 chr10 67478159 67478422 + 3 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -74880 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 454-2 chr1 21136816 21136999 + 3 NA intron (NM_001198803, intron 1 of 12) MER33|DNA|hAT-Charlie -25524 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 530-231 chr7 46290486 46290754 + 3 NA Intergenic Intergenic -369348 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 234-233 chr3 36678879 36679037 + 3 NA Intergenic L1M4|LINE|L1 60903 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 457-276 chrUn_GL000216v2 19370 19588 + 3 NA NA (CATTC)n|Satellite|Satellite NA NA 1316 chr1 112080135 112080926 + 3 NA Intergenic MIRb|SINE|MIR 89994 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 493-79 chr14 41539570 41539806 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -67168 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 823-6 chr10 42311379 42311796 + 3 NA Intergenic Intergenic 56458 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 540-17 chr1 115011689 115011976 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -17992 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 428-214 chr4 87014150 87014308 + 3 NA intron (NM_001313960, intron 1 of 17) intron (NM_001313960, intron 1 of 17) 7228 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 393-75 chr12 87939850 87940072 + 3 NA Intergenic L1ME4a|LINE|L1 89440 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 492-19 chr10 30793414 30793633 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 70304 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 427-36 chr10 131255302 131255569 + 3 NA intron (NM_174937, intron 4 of 11) L1ME3D|LINE|L1 56286 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 750-53 chr3 191690250 191690564 + 3 NA Intergenic Intergenic 229244 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 403-142 chr18 66922866 66923128 + 3 NA Intergenic LTR16A2|LTR|ERVL -158587 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 901-34 chr7 62811597 62812190 + 3 NA Intergenic ALR/Alpha|Satellite|centr 492163 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 466-202 chr5 38864855 38865011 + 3 NA intron (NM_003999, intron 1 of 17) L1MA4A|LINE|L1 18921 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 482-262 chr8 33413811 33414126 + 3 NA intron (NM_032664, intron 3 of 4) LTR48|LTR|ERV1 59178 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 396-5 chr1 34325471 34325662 + 3 NA Intergenic MIRc|SINE|MIR 148659 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 421-286 chr7 64251768 64251972 + 3 NA intron (NM_153363, intron 2 of 4) intron (NM_153363, intron 2 of 4) 23396 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 400-135 chr17 73053455 73053617 + 3 NA intron (NM_001352692, intron 3 of 9) MIR|SINE|MIR 39152 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 469-155 chr20 41964053 41964423 + 3 NA Intergenic Intergenic -345861 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 956-11 chr16 54377797 54378281 + 3 NA Intergenic MIR|SINE|MIR -7340 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 647-47 chr2 100705334 100705629 + 3 NA Intergenic Intergenic 101742 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 317-439 chr7 11812672 11812825 + 3 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 19450 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 542-122 chr20 52298401 52298620 + 3 NA Intergenic Intergenic -106525 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 602-136 chr8 131848253 131848595 + 3 NA Intergenic L1MB8|LINE|L1 -55669 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 616-138 chr5 155353294 155353615 + 3 NA Intergenic L1PA15|LINE|L1 339699 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 392-331 chr8 115629209 115629468 + 3 NA intron (NM_014112, intron 1 of 6) intron (NM_014112, intron 1 of 6) 38675 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 689-96 chr8 46767594 46768102 + 3 NA Intergenic Intergenic -73038 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 525-57 chr12 41540598 41540797 + 3 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 102958 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 341-422 chr5 18162879 18163047 + 3 NA Intergenic Intergenic 355689 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 472-313 chr8 76237843 76238178 + 3 NA Intergenic HAL1ME|LINE|L1 -168644 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 478-308 chr9 77616279 77616588 + 3 NA intron (NM_004297, intron 1 of 6) MamRep38|DNA|hAT 31889 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 793-43 chr5 114607402 114607875 + 3 NA intron (NR_130785, intron 3 of 12) L1MA5A|LINE|L1 31597 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 358-318 chr3 192853726 192853876 + 3 NA intron (NM_178496, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 64055 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 191-196 chr7 11822637 11822737 + 3 NA intron (NM_015204, intron 1 of 26) L1M2|LINE|L1 9511 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 497-38 chr11 35483112 35483392 + 3 NA intron (NM_015430, intron 3 of 11) intron (NM_015430, intron 3 of 11) 42364 NM_015430 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 446-223 chr4 110912411 110912631 + 3 NA Intergenic Intergenic -51874 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 749-27 chr14 22670160 22670464 + 3 NA Intergenic L1M1|LINE|L1 -35468 NM_001348233 79549 NM_001348233 ENSG00000255804 OR6J1 OR6J1P|OR6J2 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding 450-285 chr7 91869190 91869442 + 3 NA Intergenic Intergenic 11386 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 927-21 chr6 123826875 123827382 + 3 NA intron (NM_001040214, intron 1 of 6) L1MB3|LINE|L1 23263 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 286-193 chr2 33078612 33078756 + 3 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -55913 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 964-15 chr2 59548811 59549249 + 3 NA Intergenic Intergenic 331322 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 411-110 chr16 77345682 77345867 + 3 NA intron (NM_199355, intron 10 of 22) MER3|DNA|hAT-Charlie 89260 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 429-298 chr8 78967593 78967857 + 3 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 130196 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 499-158 chr3 3614293 3614525 + 3 NA Intergenic Intergenic -185022 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 633-98 chr5 120578126 120578561 + 3 NA intron (NM_001308088, intron 1 of 3) L1PA8A|LINE|L1 46879 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 465-209 chr4 106055412 106055677 + 3 NA intron (NM_001290768, intron 26 of 26) intron (NM_001290768, intron 26 of 26) -33066 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 679-91 chr5 161653836 161654199 + 3 NA Intergenic L1MC3|LINE|L1 -31704 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 461-213 chr5 64769420 64769676 + 3 NA promoter-TSS (NM_173829) promoter-TSS (NM_173829) 618 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 411-44 chr10 119510314 119510495 + 3 NA intron (NM_001005339, intron 4 of 4) L2b|LINE|L2 26129 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 551-12 chr10 12624117 12624434 + 3 NA intron (NM_001351032, intron 4 of 11) L1MB1|LINE|L1 28922 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 333-88 chr11 60033198 60033358 + 3 NA Intergenic L1PA15|LINE|L1 -7131 NM_173801 219990 Hs.132310 NM_173801 ENSG00000149507 OOSP2 OOSP2A|PLAC1L|TMEM122 oocyte secreted protein 2 protein-coding 649-37 chr17 71476041 71476382 + 3 NA Intergenic Intergenic -274032 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 377-11 chr1 88948149 88948373 + 3 NA intron (NM_001008661, intron 11 of 13) intron (NM_001008661, intron 11 of 13) 44368 NM_001162536 494115 Hs.481898 NM_019610 ENSG00000213516 RBMXL1 RBM1 RBMX like 1 protein-coding 554-196 chr7 110305528 110305879 + 3 NA Intergenic Intergenic -345490 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 371-205 chr2 217023161 217023347 + 3 NA Intergenic L1MC4a|LINE|L1 152482 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 547-164 chr4 96225022 96225360 + 3 NA Intergenic Intergenic -85512 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 465-187 chr3 147294501 147294708 + 3 NA Intergenic Intergenic 97826 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 528-27 chr10 21197217 21197505 + 3 NA Intergenic Intergenic 23059 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 809-2 chr10 67343761 67344264 + 3 NA intron (NM_001127384, intron 5 of 17) L1MA2|LINE|L1 59398 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 442-232 chr5 83892866 83893069 + 3 NA Intergenic Intergenic -172112 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 448-277 chr8 66331645 66331882 + 3 NA Intergenic Intergenic 97214 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 285-417 chr8 91579576 91579767 + 3 NA Intergenic MER44D|DNA|TcMar-Tigger 330352 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 566-160 chr5 146749220 146749558 + 3 NA intron (NM_001271899, intron 2 of 9) L1MD1|LINE|L1 129396 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 360-176 chr18 1271036 1271187 + 3 NA intron (NR_110327, intron 4 of 4) LTR81A|LTR|Gypsy 88518 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 353-540 chr8 134391621 134391787 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -206367 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 239-389 chr8 10093108 10093206 + 3 NA intron (NM_001135670, intron 1 of 4) L1MB7|LINE|L1 -2494 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 1367-5 chr8 139093829 139094701 + 3 NA Intergenic Intergenic -180224 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 527-111 chr17 65615970 65616233 + 3 NA Intergenic L2c|LINE|L2 -54453 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 452-187 chr4 79854845 79855058 + 3 NA intron (NR_026555, intron 1 of 1) intron (NR_026555, intron 1 of 1) 27480 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 413-333 chrX 78484879 78485053 + 3 NA Intergenic Intergenic -157275 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 575-21 chr10 72978423 72978704 + 3 NA Intergenic L1MA5A|LINE|L1 -23757 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 535-197 chr5 31301571 31301813 + 3 NA intron (NM_001362435, intron 5 of 10) intron (NM_001362435, intron 5 of 10) 108006 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 426-207 chr4 65560701 65560866 + 3 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 108705 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 482-230 chr6 140349465 140349725 + 3 NA Intergenic Intergenic 144343 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 1026-12 chr2 59382536 59383162 + 3 NA Intergenic L1MA4A|LINE|L1 165141 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 401-347 chr9 91617030 91617244 + 3 NA Intergenic Intergenic -19114 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 498-70 chr12 83362640 83362900 + 3 NA Intergenic Intergenic 675615 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 541-111 chr2 40425108 40425452 + 3 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 5024 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 556-31 chr10 131341929 131342244 + 3 NA Intergenic Intergenic -30365 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 570-116 chr2 170628686 170629030 + 3 NA intron (NM_001083615, intron 31 of 33) L5|LINE|RTE-X 85709 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 395-245 chr4 13676444 13676638 + 3 NA intron (NR_121681, intron 2 of 3) (ACAT)n|Simple_repeat|Simple_repeat 21362 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 438-199 chr4 97269792 97269996 + 3 NA Intergenic Intergenic -97032 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 528-130 chr2 108030656 108030849 + 3 NA Intergenic Intergenic 22003 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 367-470 chr8 142861038 142861254 + 3 NA Intergenic L1PB4|LINE|L1 18674 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 884-11 chr15 87911278 87911668 + 3 NA intron (NM_001012338, intron 17 of 19) L3|LINE|CR1 34795 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 374-91 chr13 102053558 102053738 + 3 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -7644 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 537-208 chr6 22401492 22401761 + 3 NA Intergenic Intergenic -98791 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 553-212 chr7 46006146 46006395 + 3 NA Intergenic MIRb|SINE|MIR -84998 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 504-68 chr14 48490519 48490790 + 3 NA Intergenic Intergenic -695640 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 444-30 chr10 115463168 115463348 + 3 NA intron (NM_207303, intron 22 of 28) intron (NM_207303, intron 22 of 28) 369893 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 499-153 chr21 32074926 32075146 + 3 NA Intergenic Intergenic 11259 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 564-179 chr6 155840060 155840260 + 3 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -106637 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 448-192 chr4 155819765 155820067 + 3 NA Intergenic Intergenic 46361 NM_017419 51802 Hs.381349 NM_017419 ENSG00000256394 ASIC5 ACCN5|HINAC|INAC acid sensing ion channel subunit family member 5 protein-coding 709-95 chr8 128318478 128318924 + 3 NA Intergenic Intergenic 168585 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 432-222 chr5 76125401 76125622 + 3 NA intron (NM_014979, intron 1 of 12) intron (NM_014979, intron 1 of 12) 42128 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 574-109 chr3 110123791 110124099 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 521117 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 634-74 chr2 71629254 71629649 + 3 NA intron (NM_001130987, intron 41 of 55) L1MEd|LINE|L1 162752 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 526-241 chr8 35221925 35222224 + 3 NA Intergenic L1ME3A|LINE|L1 -13401 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 608-58 chr18 4422090 4422413 + 3 NA intron (NM_001242761, intron 1 of 11) L1ME4a|LINE|L1 33015 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 659-4 chr1 208495424 208495868 + 3 NA Intergenic L1PA16|LINE|L1 -233042 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 497-194 chr4 32173346 32173613 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -151057 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 390-101 chr14 65654728 65654938 + 3 NA intron (NM_004480, intron 5 of 9) L1MD2|LINE|L1 183731 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 389-114 chr15 81248091 81248343 + 3 NA intron (NM_001352686, intron 2 of 18) intron (NM_001352686, intron 2 of 18) 48741 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 358-210 chr2 73494835 73495056 + 3 NA intron (NM_015120, intron 10 of 22) L1MC4a|LINE|L1 37842 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 331-35 chr1 214846574 214846828 + 3 NA Intergenic Intergenic -158841 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 397-348 chr8 137857941 137858186 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 225482 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 545-186 chr5 66365437 66365728 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 146022 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 408-317 chr7 64933814 64934013 + 3 NA Intergenic L1MA9|LINE|L1 30671 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 204-273 chr7 54699285 54699440 + 3 NA Intergenic MLT2B4|LTR|ERVL 59849 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 616-35 chr12 115072422 115072652 + 3 NA Intergenic Intergenic -388362 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 458-105 chr18 5909240 5909455 + 3 NA Intergenic Intergenic -13393 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 361-123 chr13 20250091 20250230 + 3 NA Intergenic L1M4a1|LINE|L1 -17765 NM_001110221 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 691-66 chr5 39977468 39977900 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -74607 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 586-146 chr7 101032048 101032343 + 3 NA non-coding (NR_133665, exon 3 of 12) non-coding (NR_133665, exon 3 of 12) 12114 NR_133665 140453 Hs.271819 NM_001004430 ENSG00000169876 MUC17 MUC-17|MUC-3|MUC3 mucin 17, cell surface associated protein-coding 502-282 chr8 136156295 136156663 + 3 NA Intergenic Intergenic -374319 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 645 chr1 5504384 5504778 + 3 NA Intergenic Intergenic 358160 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 628-9 chr1 78082784 78083139 + 3 NA intron (NM_001304725, intron 2 of 5) L1MC4|LINE|L1 36995 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 318-37 chr1 195408715 195408848 + 3 NA Intergenic Intergenic 679934 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 651-56 chr19 52327065 52327620 + 3 NA Intergenic Intergenic -8901 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 427-108 chr2 32517833 32518042 + 3 NA intron (NM_016252, intron 55 of 73) intron (NM_016252, intron 55 of 73) -14216 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 1028-9 chr2 209051330 209051774 + 3 NA Intergenic L1PB3|LINE|L1 -372495 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 529-146 chr3 155563666 155563884 + 3 NA intron (NM_001349252, intron 8 of 24) L2c|LINE|L2 77972 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 397-138 chr19 57486078 57486278 + 3 NA Intergenic Intergenic -1572 NM_001098494 79744 Hs.744339 NM_024691 ENSG00000105136 ZNF419 ZAPHIR|ZNF419A zinc finger protein 419 protein-coding 438-49 chr11 23182512 23182712 + 3 NA Intergenic LTR68|LTR|ERV1 236578 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 556-92 chr19 12631098 12631339 + 3 NA 3' UTR (NM_153358, exon 4 of 4) 3' UTR (NM_153358, exon 4 of 4) 20298 NM_153358 163049 Hs.720677 NM_153358 ENSG00000173875 ZNF791 - zinc finger protein 791 protein-coding 696-20 chr11 59391227 59391583 + 3 NA Intergenic Intergenic 26946 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 805-37 chr5 3167167 3167761 + 3 NA Intergenic L1M4|LINE|L1 -10371 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 486-317 chr9 107770904 107771091 + 3 NA Intergenic MIR|SINE|MIR -281228 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 815-31 chr21 14519919 14520351 + 3 NA intron (NM_022136, intron 2 of 7) MIRb|SINE|MIR 26180 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 481-234 chr5 3592821 3593005 + 3 NA Intergenic Intergenic -2919 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 567-124 chr3 168933271 168933502 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR 31441 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 429-58 chr11 96000789 96000976 + 3 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -76675 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 847-5 chr10 41832856 41833281 + 3 NA Intergenic ALR/Alpha|Satellite|centr 534977 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 712-51 chr2 213334607 213335065 + 3 NA intron (NR_047660, intron 4 of 14) L1MA2|LINE|L1 50372 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 456-212 chr3 175447492 175447807 + 3 NA intron (NM_207015, intron 6 of 13) intron (NM_207015, intron 6 of 13) 78109 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 794-39 chr6 146724773 146725222 + 3 NA intron (NM_024694, intron 18 of 35) intron (NM_024694, intron 18 of 35) 78827 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 726-71 chr7 39535182 39535466 + 3 NA Intergenic MER21B|LTR|ERVL -31080 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 557-144 chr4 12953496 12953834 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie 530675 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 773-19 chr20 16701551 16701880 + 3 NA Intergenic AluSx3|SINE|Alu -28311 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 612-44 chr15 25024028 25024480 + 3 NA intron (NR_146177, intron 23 of 147) L1MC4|LINE|L1 -7619 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 473-81 chr14 42189332 42189611 + 3 NA Intergenic L1MA7|LINE|L1 582615 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 438-83 chr15 98361397 98361590 + 3 NA intron (NR_146567, intron 1 of 2) intron (NR_146567, intron 1 of 2) -29935 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 568-125 chr21 31156691 31156900 + 3 NA intron (NM_001353690, intron 16 of 27) intron (NM_001353690, intron 16 of 27) 4145 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 387-5 chr1 79651095 79651246 + 3 NA Intergenic Intergenic -644440 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 350-52 chr10 78608446 78608664 + 3 NA Intergenic L1MD2|LINE|L1 341213 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 413-38 chr10 63971872 63972082 + 3 NA Intergenic L1MDa|LINE|L1 -450087 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 469-71 chr12 118712764 118712966 + 3 NA Intergenic Intergenic 48814 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 761-20 chr18 67320337 67320667 + 3 NA Intergenic Intergenic -196044 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 312-479 chr7 31214305 31214449 + 3 NA Intergenic Intergenic 126349 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 197-161 chr4 160402788 160402874 + 3 NA Intergenic L1ME3A|LINE|L1 -625047 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 530-111 chr19 57567154 57567350 + 3 NA Intergenic LTR25-int|LTR|ERV1 -7389 NM_001277092 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 553-156 chr3 113926218 113926490 + 3 NA intron (NM_001172105, intron 5 of 12) L1HS|LINE|L1 -21547 NM_001363952 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 358-258 chr20 41601026 41601194 + 3 NA intron (NM_032221, intron 1 of 36) L2b|LINE|L2 17267 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 537-214 chr6 56075023 56075235 + 3 NA intron (NM_030820, intron 19 of 29) intron (NM_030820, intron 19 of 29) 16533 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 571-168 chr8 62648951 62649206 + 3 NA intron (NM_001304533, intron 3 of 6) L2c|LINE|L2 -328783 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 459-52 chr11 85197180 85197385 + 3 NA intron (NM_001142699, intron 4 of 27) intron (NM_001142699, intron 4 of 27) -273861 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 472-70 chr13 38155242 38155544 + 3 NA Intergenic L1MEc|LINE|L1 -12161 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 877-35 chr8 130981407 130981936 + 3 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 59238 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 849-11 chr14 53748131 53748646 + 3 NA Intergenic Intergenic 200096 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 307-197 chr18 5928475 5928597 + 3 NA Intergenic L1MEi|LINE|L1 -32582 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 558-114 chr20 22976155 22976502 + 3 NA Intergenic Intergenic -59092 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 296-110 chr12 84364134 84364277 + 3 NA Intergenic Intergenic 548594 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 477-236 chr5 78676019 78676266 + 3 NA Intergenic Intergenic -27370 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 571-171 chr8 81956343 81956645 + 3 NA Intergenic Intergenic -114208 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 601-74 chr2 48394402 48394694 + 3 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -46218 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 546-137 chr2_KI270768v1_alt 74777 75212 + 3 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat 30659 NR_161366 408029 Hs.145567 NR_161366 C2orf27B - chromosome 2 open reading frame 27B ncRNA 509-116 chr2 128394175 128394407 + 3 NA Intergenic Intergenic -75423 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 245-347 chr8 84317013 84317179 + 3 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -98388 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 381-286 chr4 155538809 155538939 + 3 NA Intergenic Intergenic -127836 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 518-61 chr11 112843737 112843992 + 3 NA Intergenic Intergenic -117556 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 476-237 chr6 15092695 15092941 + 3 NA Intergenic MER39|LTR|ERV1 -153251 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 680-62 chr2 117572801 117573101 + 3 NA Intergenic L1MEd|LINE|L1 -241740 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 1101-18 chr8 46358585 46359368 + 3 NA Intergenic ALR/Alpha|Satellite|centr 258667 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 490-265 chr7 49582111 49582353 + 3 NA Intergenic LTR101_Mam|LTR|ERVL -191406 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 494-39 chr11 81944626 81944914 + 3 NA intron (NR_120571, intron 6 of 7) AluJr4|SINE|Alu -53934 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 401-257 chr5 40853614 40853848 + 3 NA exon (NM_032587, exon 3 of 3) exon (NM_032587, exon 3 of 3) 12364 NM_032587 84674 Hs.200242 NM_032587 ENSG00000132357 CARD6 CINCIN1 caspase recruitment domain family member 6 protein-coding 486-253 chr6 21576993 21577179 + 3 NA Intergenic AluJb|SINE|Alu -16665 NM_003107 6659 Hs.643910 NM_003107 ENSG00000124766 SOX4 EVI16 SRY-box transcription factor 4 protein-coding 538-246 chr8 135307620 135307849 + 3 NA Intergenic L2a|LINE|L2 73603 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 321-165 chr14 45685345 45685541 + 3 NA Intergenic L1MA4|LINE|L1 30159 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 479-126 chr20 21585300 21585505 + 3 NA intron (NR_109880, intron 1 of 3) intron (NR_109880, intron 1 of 3) 15378 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 1476-4 chr5 71825977 71827002 + 3 NA Intergenic L1MA1|LINE|L1 107214 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 526-141 chr2 162788127 162788423 + 3 NA intron (NR_110258, intron 4 of 4) Tigger5b|DNA|TcMar-Tigger 19339 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 852-13 chr12 43089506 43089886 + 3 NA Intergenic L1MB3|LINE|L1 -65619 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 558-93 chr2 31291053 31291398 + 3 NA Intergenic Intergenic 57073 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 378-410 chr7 71423524 71423697 + 3 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -115840 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 383-94 chr13 46813366 46813648 + 3 NA Intergenic L1ME1|LINE|L1 -16346 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 438-213 chr5 28796993 28797182 + 3 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat -129783 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 453-22 chr10 20449942 20450215 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -101892 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 584-11 chr1 103185880 103186186 + 3 NA Intergenic L1PREC2|LINE|L1 -77511 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 418-285 chr8 84764406 84764649 + 3 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 58600 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 454-223 chr3 185114873 185115109 + 3 NA intron (NM_001025266, intron 1 of 1) MIR3|SINE|MIR 38069 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 440-34 chr11 13927818 13928038 + 3 NA Intergenic L1MB8|LINE|L1 -3065 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 454-191 chr20 48456328 48456610 + 3 NA Intergenic Intergenic 96558 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 368-415 chr7 24240111 24240259 + 3 NA Intergenic Intergenic -44005 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 695-17 chr10 104875745 104876174 + 3 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -209743 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 518-216 chr4 134264933 134265120 + 3 NA Intergenic Intergenic -63237 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 476-124 chr19 396842 397107 + 3 NA Intergenic Intergenic 12173 NM_001136263 126567 Hs.223770 NM_001136263 ENSG00000183186 C2CD4C FAM148C|KIAA1957|NLF3 C2 calcium dependent domain containing 4C protein-coding 236-84 chr12 34617669 34617861 + 3 NA Intergenic ALR/Alpha|Satellite|centr 595269 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 437-88 chr15 79514246 79514446 + 3 NA Intergenic Intergenic 81830 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 556-200 chr7 1395352 1395619 + 3 NA Intergenic Intergenic 63985 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 463-227 chr5 23454511 23454758 + 3 NA Intergenic L1ME3A|LINE|L1 -52975 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 533-253 chrX 87359720 87359928 + 3 NA Intergenic L1MA1|LINE|L1 -157978 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 532-271 chr8 78175224 78175550 + 3 NA Intergenic Intergenic -340953 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 424-219 chr5 41673206 41673365 + 3 NA Intergenic Intergenic -162684 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 411-87 chr14 48761783 48762028 + 3 NA Intergenic Intergenic 824475 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 477-155 chr2 81751614 81751894 + 3 NA Intergenic Intergenic -284808 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 753-10 chr10 56811602 56812110 + 3 NA Intergenic Intergenic -450583 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 504-111 chr19 18877342 18877628 + 3 NA TTS (NM_001290265) TTS (NM_001290265) 18673 NM_198207 10715 Hs.412355 NM_021267 ENSG00000223802 CERS1 EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1 ceramide synthase 1 protein-coding 331-329 chr22 25830180 25830372 + 3 NA intron (NM_001318245, intron 15 of 43) MIRb|SINE|MIR 88088 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 310-458 chr6 132111500 132111667 + 3 NA Intergenic Intergenic 3680 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 415-205 chr5 6191330 6191500 + 3 NA Intergenic Intergenic 145877 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 508-193 chr5 123649519 123649770 + 3 NA Intergenic L1MEb|LINE|L1 104227 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 175-180 chrM 1687 1789 + 3 NA promoter-TSS (NR_137295) promoter-TSS (NR_137295) 67 NR_137295 480-107 chr16 81261149 81261353 + 3 NA intron (NM_017429, intron 3 of 10) intron (NM_017429, intron 3 of 10) 22562 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 397-57 chr11 98265259 98265435 + 3 NA Intergenic L1M2|LINE|L1 -755602 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 341-224 chr19 58119500 58119732 + 3 NA Intergenic L1ME4c|LINE|L1 -1190 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 609-48 chr19 44243066 44243491 + 3 NA Intergenic AluSx3|SINE|Alu -16602 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 594-40 chr13 33484006 33484213 + 3 NA intron (NM_001243476, intron 4 of 17) LTR8A|LTR|ERV1 -148843 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 658-110 chr6 119271879 119272187 + 3 NA intron (NM_005907, intron 5 of 12) intron (NM_005907, intron 5 of 12) 77728 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 610-123 chr4 29503790 29504172 + 3 NA Intergenic Intergenic 289689 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 570-61 chr14 66589406 66589697 + 3 NA intron (NM_001024218, intron 1 of 21) L1PA7|LINE|L1 82144 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 539-154 chr4 30440514 30440745 + 3 NA Intergenic HAL1ME|LINE|L1 -279740 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 414-66 chr12 37918644 37918818 + 3 NA Intergenic ALR/Alpha|Satellite|centr -398043 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 624-15 chr10 55948099 55948379 + 3 NA Intergenic Intergenic -320297 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 986-20 chr3 59273092 59273640 + 3 NA Intergenic Intergenic -223334 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 472-182 chr20 6340299 6340523 + 3 NA Intergenic Intergenic -86321 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 643-68 chr22 28119122 28119472 + 3 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -198685 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 458-153 chr2 212822738 212823089 + 3 NA Intergenic LTR33|LTR|ERVL 27582 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 460-106 chr17 13770232 13770536 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -168455 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 733-61 chr4 175220940 175221309 + 3 NA Intergenic Intergenic 302766 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 460-188 chr3 8145446 8145751 + 3 NA Intergenic Intergenic -129291 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 583-52 chr13 93019047 93019336 + 3 NA Intergenic L1ME3E|LINE|L1 -26150 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 571-136 chr5 75838389 75838717 + 3 NA Intergenic L1MB2|LINE|L1 -121116 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 427-174 chr4 33515888 33516114 + 3 NA Intergenic Intergenic 523892 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 470-287 chr9 37679377 37679576 + 3 NA intron (NM_001371223, intron 1 of 15) L1MB8|LINE|L1 11467 NM_001371223 363-145 chr14 72768789 72768990 + 3 NA intron (NM_001280544, intron 2 of 9) L1MC5|LINE|L1 123760 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 565-91 chr2 227985523 227985923 + 3 NA intron (NM_030623, intron 10 of 10) intron (NM_030623, intron 10 of 10) 114092 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 542-207 chr7 110592898 110593202 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -497956 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 415-260 chr7 109993351 109993576 + 3 NA Intergenic L1PA16|LINE|L1 -33250 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 417-147 chr2 111073047 111073204 + 3 NA intron (NM_001371254, intron 17 of 18) L1MD2|LINE|L1 42463 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 525-277 chr9 27657894 27658106 + 3 NA Intergenic Intergenic -84134 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 533-193 chr5 166040094 166040473 + 3 NA Intergenic Intergenic 886087 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 747-61 chr7 42523596 42524049 + 3 NA Intergenic L2|LINE|L2 182625 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 574-171 chr7 138247273 138247468 + 3 NA Intergenic LTR23|LTR|ERV1 123612 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 469-120 chr19 24342743 24342941 + 3 NA Intergenic ALR/Alpha|Satellite|centr -179395 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 479-241 chr8 65118973 65119238 + 3 NA Intergenic Intergenic 61235 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 735 chr1 26751947 26752416 + 3 NA intron (NM_139135, intron 4 of 19) intron (NM_139135, intron 4 of 19) -35782 NM_017837 55650 Hs.259605 NM_017837 ENSG00000060642 PIGV GPI-MT-II|HPMRS1|PIG-V phosphatidylinositol glycan anchor biosynthesis class V protein-coding 528-241 chr7 138429670 138430025 + 3 NA Intergenic LTR10B|LTR|ERV1 -30412 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 641-59 chr2 35587704 35587955 + 3 NA Intergenic MER66-int|LTR|ERV1 116424 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 675-14 chr10 67620502 67620880 + 3 NA intron (NM_001127384, intron 2 of 17) Kanga1c|DNA|TcMar-Tc2 44969 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 407-116 chr18 5190311 5190508 + 3 NA intron (NM_001330553, intron 1 of 1) L1MC|LINE|L1 6848 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 884-31 chr3 63313991 63314381 + 3 NA intron (NM_001130003, intron 2 of 5) L1PB1|LINE|L1 35878 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 596-167 chr8 109762275 109762506 + 3 NA Intergenic L1MA2|LINE|L1 -70599 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 579-139 chr6 48678573 48678915 + 3 NA Intergenic Intergenic -610055 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 654-111 chr6 163872926 163873206 + 3 NA Intergenic MIR3|SINE|MIR -201582 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 543-125 chr2 71952136 71952342 + 3 NA Intergenic Intergenic 195623 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 638-157 chr8 101846417 101846712 + 3 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -55595 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 403-106 chr14 82360912 82361143 + 3 NA Intergenic Intergenic -281605 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 864-32 chr5 15884582 15884946 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -50418 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 406-150 chr2 114870055 114870321 + 3 NA intron (NM_001321910, intron 2 of 26) MIRb|SINE|MIR -36640 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 656-27 chr10 130952356 130952846 + 3 NA Intergenic AluSx1|SINE|Alu 10067 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 516-7 chr1 114043962 114044226 + 3 NA Intergenic L2|LINE|L2 64620 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 330-233 chr18 76203931 76204174 + 3 NA Intergenic L2c|LINE|L2 -5458 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 418-219 chr5 86429050 86429216 + 3 NA Intergenic MLT2B3|LTR|ERVL 146689 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 708-10 chr10 62335870 62336339 + 3 NA Intergenic L2|LINE|L2 -38053 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 321-53 chr10 26417293 26417499 + 3 NA Intergenic LTR37A|LTR|ERV1 -20945 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 831-28 chr21 27552162 27552646 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -169975 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 797-5 chr10 19137751 19138059 + 3 NA intron (NM_001142308, intron 10 of 39) intron (NM_001142308, intron 10 of 39) 89104 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 621-109 chr6 45069908 45070213 + 3 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 127710 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 386-278 chr5 10828544 10828761 + 3 NA Intergenic MIRc|SINE|MIR -67418 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 867-8 chr1 208519638 208520046 + 3 NA Intergenic L1MEc|LINE|L1 -208846 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 607-53 chr16 82509478 82509757 + 3 NA Intergenic Intergenic -117352 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 523-19 chr1 217224430 217224672 + 3 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat -86849 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 378-261 chr20 55206969 55207140 + 3 NA Intergenic L1MEd|LINE|L1 -215989 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 413-121 chr18 35590983 35591185 + 3 NA promoter-TSS (NR_039771) promoter-TSS (NR_039771) -653 NR_039771 100616257 NR_039771 ENSG00000283514 MIR3975 - microRNA 3975 ncRNA 319-361 chr4 37180282 37180431 + 3 NA Intergenic Intergenic 61635 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 467-295 chr9 30647942 30648174 + 3 NA Intergenic AluJb|SINE|Alu -239604 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 475-232 chr5 144049388 144049673 + 3 NA Intergenic L1PA8|LINE|L1 121129 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 638-154 chr8 50995436 50995789 + 3 NA Intergenic Intergenic 813833 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 759-75 chr8 126288465 126288879 + 3 NA Intergenic Intergenic -36823 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 351-488 chr8 83867050 83867308 + 3 NA Intergenic Intergenic -315608 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 432-112 chr19 37804665 37804853 + 3 NA Intergenic MER70C|LTR|ERVL -12652 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 444-151 chr3 28594421 28594627 + 3 NA intron (NR_038840, intron 2 of 4) MLT1F|LTR|ERVL-MaLR 19246 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 561-71 chr14 89522822 89523070 + 3 NA intron (NM_001085471, intron 1 of 6) L1ME1|LINE|L1 -53270 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 355-503 chr8 98911914 98912094 + 3 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 30606 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 484-87 chr16 71231688 71231905 + 3 NA Intergenic L2b|LINE|L2 -1074 NM_001198543 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 400-175 chr2 138254530 138254735 + 3 NA Intergenic Intergenic 152748 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 492-118 chr19 36514639 36514824 + 3 NA exon (NM_001166037, exon 3 of 3) exon (NM_001166037, exon 3 of 3) 13540 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 549-95 chr19 37666394 37666682 + 3 NA Intergenic Intergenic -10277 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 621-143 chr9 107155307 107155675 + 3 NA Intergenic Intergenic -52503 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 499-105 chr19 53207930 53208098 + 3 NA Intergenic L1PA7|LINE|L1 -4934 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 510-197 chr3 192773028 192773340 + 3 NA Intergenic Intergenic -45643 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 454-326 chr8 138327464 138327719 + 3 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 169670 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 812-31 chr2 114105337 114105827 + 3 NA Intergenic L1MA7|LINE|L1 -125598 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 493-278 chr7 61929389 61929689 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1374517 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 403-56 chr11 81573398 81573548 + 3 NA Intergenic Intergenic 317363 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 490-232 chr5 155370722 155370958 + 3 NA Intergenic L1MEc|LINE|L1 357085 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 250-80 chr11 115998972 115999117 + 3 NA Intergenic Intergenic -238844 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 865-24 chr2 115028281 115028826 + 3 NA intron (NM_001321910, intron 2 of 26) L1MA4|LINE|L1 -36020 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 611-73 chr2 42149909 42150385 + 3 NA intron (NR_110584, intron 1 of 3) MLT1M|LTR|ERVL-MaLR -19206 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 466-222 chr6 34727342 34727609 + 3 NA Intergenic Intergenic -29619 NR_029472 6631 Hs.1063 NM_003093 ENSG00000124562 SNRPC U1C|Yhc1 small nuclear ribonucleoprotein polypeptide C protein-coding 509-164 chr3 187948197 187948419 + 3 NA Intergenic (AG)n|Simple_repeat|Simple_repeat 28099 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 343-145 chr14 64492469 64492659 + 3 NA intron (NM_001304508, intron 1 of 2) intron (NM_001304508, intron 1 of 2) 5428 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 728-40 chr17 73574061 73574418 + 3 NA intron (NM_001144952, intron 1 of 44) L2a|LINE|L2 60556 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 543-200 chr5 41562782 41563021 + 3 NA Intergenic L2|LINE|L2 -52300 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 486-18 chr1 215735877 215736077 + 3 NA intron (NM_206933, intron 60 of 71) MIRc|SINE|MIR 168673 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 333-392 chr4 61861122 61861278 + 3 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 300565 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 354-290 chr3 37579225 37579366 + 3 NA intron (NM_002207, intron 15 of 27) MLT1J|LTR|ERVL-MaLR 127154 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 329-296 chr2 169894619 169894751 + 3 NA intron (NM_172070, intron 6 of 38) intron (NM_172070, intron 6 of 38) 67177 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 506-253 chr6 72569236 72569555 + 3 NA Intergenic L1MC1|LINE|L1 -52448 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 384-377 chr8 112003814 112004111 + 3 NA Intergenic L1MA2|LINE|L1 627323 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 268-254 chr3 146816407 146816542 + 3 NA Intergenic Intergenic -105449 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 417-269 chr7 91154594 91154880 + 3 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -109696 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 551-189 chr7 45376957 45377217 + 3 NA Intergenic L1MEg|LINE|L1 -197053 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 434-262 chr7 57946456 57946641 + 3 NA Intergenic ALR/Alpha|Satellite|centr 496371 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 625-9 chr1 240200840 240201168 + 3 NA intron (NM_001348094, intron 4 of 14) intron (NM_001348094, intron 4 of 14) 109121 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 440-129 chr2 153251253 153251497 + 3 NA Intergenic HUERS-P1-int|LTR|ERV1 227387 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 537-251 chr8 81397061 81397374 + 3 NA Intergenic Intergenic 50222 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 497-82 chr14 87516145 87516388 + 3 NA Intergenic L1ME3|LINE|L1 139028 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 357-219 chr2 153755759 153755919 + 3 NA Intergenic Intergenic -116083 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 735-16 chr12 112694766 112695207 + 3 NA TTS (NR_031631) TTS (NR_031631) 190 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 113-4 chr1 170756925 170756981 + 3 NA Intergenic MER99|DNA|hAT? 92822 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 571-10 chr10 44435832 44436049 + 3 NA Intergenic Intergenic -50843 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 390-216 chr20 58029481 58029710 + 3 NA Intergenic Intergenic 25691 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 864-18 chr17 77755402 77755772 + 3 NA Intergenic Intergenic -27028 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 399-19 chr1 200224377 200224610 + 3 NA Intergenic Intergenic 149299 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 468-146 chr2 81782974 81783203 + 3 NA Intergenic L1M1|LINE|L1 -316142 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 338-253 chr2 49057227 49057447 + 3 NA intron (NM_000145, intron 2 of 9) L1M2c|LINE|L1 -2266 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 436-292 chr8 13091122 13091331 + 3 NA intron (NM_001348083, intron 10 of 13) intron (NM_001348083, intron 10 of 13) 25018 NM_001164271 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 1668-3 chr3 178916928 178917785 + 3 NA Intergenic L1PB4|LINE|L1 -56951 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 667-60 chr21 32163345 32163688 + 3 NA Intergenic Intergenic -77221 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 513-62 chr12 118667010 118667222 + 3 NA Intergenic AluJr|SINE|Alu 94563 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 419-275 chr7 64711441 64711649 + 3 NA TTS (NM_001282359) TTS (NM_001282359) 32481 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 620-107 chr5 25716533 25716920 + 3 NA Intergenic Intergenic 525773 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 516-177 chr3 110742456 110742693 + 3 NA Intergenic Intergenic 327385 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 235-293 chr5 106333349 106333503 + 3 NA Intergenic L1MA9|LINE|L1 677588 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 213-70 chr12 39504636 39504742 + 3 NA Intergenic Intergenic -61569 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 968-3 chr11 60116704 60117260 + 3 NA Intergenic Intergenic 28318 NM_001256916 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 442-63 chr13 45732115 45732299 + 3 NA Intergenic 7SLRNA|srpRNA|srpRNA 29738 NM_001286342 220082 Hs.186363 NM_152719 ENSG00000174015 SPERT CBY2|NURIT spermatid associated protein-coding 439-276 chr7 147787333 147787489 + 3 NA intron (NM_014141, intron 12 of 22) intron (NM_014141, intron 12 of 22) 115732 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 654-9 chr1 221887028 221887430 + 3 NA Intergenic Intergenic -46563 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 438-294 chr9 72989535 72989764 + 3 NA Intergenic Intergenic -36596 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 614-22 chr12 7330231 7330609 + 3 NA Intergenic Intergenic 26088 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 574-158 chr6 165140736 165141055 + 3 NA Intergenic Intergenic 168710 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 523-95 chr16 27871687 27872006 + 3 NA intron (NM_001323901, intron 2 of 5) L1MB8|LINE|L1 16311 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 545-243 chr8 119359792 119360003 + 3 NA Intergenic Intergenic 34726 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 568-97 chr2 19291006 19291265 + 3 NA Intergenic MIR|SINE|MIR -57294 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 479-139 chr3 77871440 77871615 + 3 NA Intergenic Intergenic 177436 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 246-150 chr17 35219944 35220051 + 3 NA Intergenic MIRb|SINE|MIR -23075 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 225-354 chr8 78058590 78058704 + 3 NA Intergenic Intergenic -457693 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 506-303 chr9 79168346 79168585 + 3 NA Intergenic Intergenic -22799 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 490-253 chr6 162475413 162475588 + 3 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -251632 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 1167-5 chr12 110666286 110666889 + 3 NA intron (NM_001256413, intron 2 of 6) intron (NM_001256413, intron 2 of 6) 22528 NM_032369 84329 Hs.211511 NM_032369 ENSG00000122986 HVCN1 HV1|VSOP hydrogen voltage gated channel 1 protein-coding 333-253 chr2 103276226 103276371 + 3 NA Intergenic LTR68|LTR|ERV1 -291869 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 521-235 chr7 54097379 54097700 + 3 NA Intergenic Intergenic -233158 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 612-11 chr10 10022185 10022452 + 3 NA Intergenic Intergenic -36404 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 776-59 chr9 27456686 27457149 + 3 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -67397 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 515-141 chr20 7186917 7187217 + 3 NA intron (NR_110609, intron 4 of 7) intron (NR_110609, intron 4 of 7) 67135 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 413-13 chr1 106202809 106203038 + 3 NA Intergenic Intergenic -174670 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 462-251 chr6 56116969 56117258 + 3 NA intron (NR_134851, intron 16 of 29) L1MA1|LINE|L1 -25451 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 604-114 chr3 139035491 139035841 + 3 NA Intergenic MER89-int|LTR|ERV1 9226 NM_001134657 389152 Hs.531377 NM_001004315 ENSG00000233701 PRR23C - proline rich 23C protein-coding 196-242 chr8 5858458 5858589 + 3 NA Intergenic Intergenic 548025 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 199-154 chr3 1707343 1707447 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -391408 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 726-16 chr12 37986511 37986923 + 3 NA Intergenic ALR/Alpha|Satellite|centr -330057 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 334-78 chr11 8152372 8152598 + 3 NA intron (NM_001206671, intron 1 of 5) L1MB8|LINE|L1 16540 NM_001346694 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 684-52 chr2 21186354 21186776 + 3 NA Intergenic Intergenic 62579 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 822-16 chr15 61386391 61386810 + 3 NA Intergenic Intergenic -157298 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 558-154 chr4 69088400 69088779 + 3 NA intron (NM_001349568, intron 1 of 6) intron (NM_001349568, intron 1 of 6) -7885 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 717-49 chr2 198995910 198996300 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 461834 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 415-5 chr1 67914308 67914536 + 3 NA intron (NR_040077, intron 1 of 9) MIR|SINE|MIR -80955 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 676-56 chr2 52899680 52900056 + 3 NA Intergenic Intergenic -197253 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 548-152 chr3 115411504 115411718 + 3 NA Intergenic Intergenic -211899 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 508-133 chr20 48810961 48811190 + 3 NA intron (NM_020820, intron 1 of 39) Charlie8|DNA|hAT-Charlie 16924 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 540-203 chr8 16890215 16890526 + 3 NA Intergenic L1MEc|LINE|L1 111975 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 422-274 chr7 21123076 21123302 + 3 NA Intergenic Intergenic 287758 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 419-61 chr11 129703577 129703787 + 3 NA Intergenic Intergenic -86413 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 636-149 chr8 121327451 121327780 + 3 NA Intergenic Intergenic -311731 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 359-68 chr10 93125811 93125973 + 3 NA Intergenic Intergenic 51999 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 688-97 chr6 95227071 95227556 + 3 NA Intergenic Intergenic 350138 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 431-198 chr4 64318385 64318645 + 3 NA intron (NM_001363796, intron 4 of 11) L1MD2|LINE|L1 90935 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 819-10 chr16 7796645 7797179 + 3 NA Intergenic Intergenic 464067 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 598-97 chr4 70021015 70021278 + 3 NA Intergenic Intergenic -7313 NM_000200 3347 Hs.654442 NM_000200 ENSG00000205649 HTN3 HIS2|HTN2|HTN5|PB histatin 3 protein-coding 736-87 chr8 128056402 128056815 + 3 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) 7456 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 361-229 chr2 116148811 116148990 + 3 NA Intergenic Intergenic 805085 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 493-101 chr16 66336267 66336470 + 3 NA Intergenic Intergenic -30323 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 857-33 chr22 25212865 25213441 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -6486 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 296-389 chr5 158292929 158293113 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 116752 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 344-295 chr22 27981274 27981429 + 3 NA 3' UTR (NM_001145418, exon 23 of 23) 3' UTR (NM_001145418, exon 23 of 23) -60739 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 927-22 chr7 41591307 41591802 + 3 NA Intergenic Intergenic -102365 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 933-18 chr2 40153452 40153816 + 3 NA intron (NM_001351483, intron 7 of 8) intron (NM_001351483, intron 7 of 8) 236000 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 499-161 chr3 5111478 5111700 + 3 NA Intergenic MIR|SINE|MIR -10703 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 415-50 chr11 118859643 118859845 + 3 NA Intergenic AluJr4|SINE|Alu -24148 NM_001716 643 Hs.113916 NM_001716 ENSG00000160683 CXCR5 BLR1|CD185|MDR15 C-X-C motif chemokine receptor 5 protein-coding 632-43 chr18 22683529 22683868 + 3 NA Intergenic Intergenic 103139 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 255-95 chr13 84224793 84224925 + 3 NA intron (NR_046871, intron 1 of 6) intron (NR_046871, intron 1 of 6) 84257 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 394-328 chr8 99708789 99708984 + 3 NA intron (NM_017890, intron 36 of 61) intron (NM_017890, intron 36 of 61) -172025 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 243-272 chr3 1748294 1748445 + 3 NA Intergenic Intergenic -350434 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 479-36 chr11 101222140 101222445 + 3 NA Intergenic L1M2c|LINE|L1 -92479 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 354-194 chr19 43878497 43878712 + 3 NA intron (NM_001033719, intron 1 of 1) L1MEg|LINE|L1 1532 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 475-169 chr22 34815657 34815911 + 3 NA intron (NR_138042, intron 3 of 4) MSTA|LTR|ERVL-MaLR 182132 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 499-139 chr2 226229672 226229926 + 3 NA Intergenic L1MA7|LINE|L1 87005 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 497-172 chr3 35096703 35097037 + 3 NA intron (NR_110817, intron 2 of 3) L1M1|LINE|L1 297153 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 284-63 chr11 8902729 8902844 + 3 NA intron (NM_005418, intron 1 of 22) L1MEc|LINE|L1 8165 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 480-88 chr15 19984963 19985254 + 3 NA Intergenic L1ME2|LINE|L1 -297636 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 473-199 chr4 99186444 99186647 + 3 NA intron (NR_037884, intron 3 of 9) L1PA15|LINE|L1 -24898 NR_028270 359806 Hs.537400 NR_028270 PCNAP1 p1PCNA proliferating cell nuclear antigen pseudogene 1 pseudo 567-198 chr8 144865403 144865630 + 3 NA Intergenic LTR46-int|LTR|ERV1 -11960 NM_001081003 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 742-84 chr9 96804865 96805319 + 3 NA Intergenic L1MA9|LINE|L1 -26963 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 426-318 chrUn_KI270442v1 84613 84833 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 1271-3 chr12 37949747 37950596 + 3 NA Intergenic ALR/Alpha|Satellite|centr -366603 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 181-57 chr18 6075433 6075503 + 3 NA intron (NM_173464, intron 16 of 19) L1ME3A|LINE|L1 -179514 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 353-437 chr6 39999676 39999836 + 3 NA Intergenic Intergenic -65294 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 736-86 chr8 72494856 72495271 + 3 NA Intergenic L2a|LINE|L2 -42162 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 1280-3 chr21 23090280 23090833 + 3 NA Intergenic Intergenic 11272 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 412-136 chr18 69719010 69719273 + 3 NA intron (NM_152721, intron 5 of 7) LTR8B|LTR|ERV1 228732 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 1099-8 chr14 62330914 62331628 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -191298 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 539-214 chr9 26495025 26495205 + 3 NA Intergenic L1ME3G|LINE|L1 397687 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 508-112 chr2 114352097 114352437 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -90374 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 468-218 chr4 37239424 37239602 + 3 NA Intergenic Intergenic 2478 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 363-390 chr6 73728472 73728615 + 3 NA intron (NM_001159588, intron 3 of 31) L1ME2z|LINE|L1 32340 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 427-234 chr6 161817843 161818034 + 3 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 346961 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 896-19 chr2 179244624 179245013 + 3 NA intron (NM_178123, intron 1 of 17) L1MD1|LINE|L1 20014 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 696-76 chr3 166190086 166190469 + 3 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -352854 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 474-9 chr1 91972946 91973253 + 3 NA intron (NM_001242806, intron 4 of 18) L2a|LINE|L2 20947 NM_001726 676 Hs.482520 NM_001726 ENSG00000137948 BRDT BRD6|CT9|SPGF21 bromodomain testis associated protein-coding 518-9 chr1 177707899 177708153 + 3 NA intron (NR_110722, intron 2 of 3) intron (NR_110722, intron 2 of 3) 7502 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 1231-7 chr8 52330145 52330766 + 3 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -75963 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 515-273 chr9 7315648 7315848 + 3 NA Intergenic Intergenic 484030 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 774-65 chr4 108254524 108254927 + 3 NA Intergenic Intergenic 82605 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 486-4 chr1 57685226 57685425 + 3 NA intron (NM_001353980, intron 3 of 5) L1PA16|LINE|L1 -175256 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 514-109 chr16 9471274 9471451 + 3 NA Intergenic L1ME2|LINE|L1 -15857 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 320-589 chr9 31852741 31852861 + 3 NA Intergenic L1ME3B|LINE|L1 -471311 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 447-38 chr11 32448249 32448464 + 3 NA intron (NR_120548, intron 1 of 4) intron (NR_120548, intron 1 of 4) 12317 NR_120546 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 477-217 chr4 26708355 26708588 + 3 NA intron (NM_001292054, intron 10 of 17) L1MB1|LINE|L1 124387 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 710-87 chr7 69062061 69062450 + 3 NA Intergenic MLT2B4|LTR|ERVL 535369 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 560-134 chr5 12029621 12029897 + 3 NA Intergenic Intergenic -125313 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 443-203 chr3 95347700 95347938 + 3 NA Intergenic Intergenic 335374 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 477-162 chr2 125614393 125614605 + 3 NA Intergenic Intergenic 503486 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 494-219 chr5 18274101 18274384 + 3 NA Intergenic Intergenic 466968 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 558-229 chr9 24986927 24987114 + 3 NA Intergenic Intergenic -441123 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 675-73 chr5 88088587 88088937 + 3 NA Intergenic Intergenic 180083 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 204-81 chr13 104579683 104579830 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -886111 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 492-16 chr1 245915700 245915924 + 3 NA intron (NM_022743, intron 7 of 11) L1ME4a|LINE|L1 501600 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 489-209 chr5 90444946 90445145 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -28884 NM_001370354 10622 Hs.282387 NM_006467 ENSG00000113356 POLR3G RPC32|RPC7 RNA polymerase III subunit G protein-coding 551-208 chr8 57657473 57657784 + 3 NA Intergenic L1MB7|LINE|L1 -88521 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 541-75 chr15 100479439 100479651 + 3 NA intron (NM_001290341, intron 8 of 13) intron (NM_001290341, intron 8 of 13) 64741 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 484-136 chr2 123187646 123187957 + 3 NA Intergenic AluJo|SINE|Alu -114320 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 219-364 chr8 119035274 119035416 + 3 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -31902 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 487-146 chr2 88612898 88613181 + 3 NA intron (NM_004836, intron 2 of 16) intron (NM_004836, intron 2 of 16) 11890 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 396-243 chr4 21201920 21202074 + 3 NA intron (NM_147182, intron 2 of 8) L1PA16|LINE|L1 101909 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 483-11 chr1 118460678 118460901 + 3 NA Intergenic L1PA15-16|LINE|L1 -275561 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 396-248 chr4 37513928 37514117 + 3 NA intron (NM_001104629, intron 1 of 3) MSTD|LTR|ERVL-MaLR 60097 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 741-71 chr8 87658018 87658477 + 3 NA Intergenic (TAAT)n|Simple_repeat|Simple_repeat 215768 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 533-125 chr21 35083790 35084141 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -34667 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 226-265 chr4 166533518 166533628 + 3 NA Intergenic Intergenic 660336 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 559-186 chr8 104105313 104105631 + 3 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -117863 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 743-77 chr7 24368358 24368786 + 3 NA Intergenic Intergenic 84382 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 311-63 chr10 85840347 85840546 + 3 NA intron (NM_017551, intron 8 of 15) L1PA13|LINE|L1 262715 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 551-36 chr11 104281309 104281729 + 3 NA Intergenic L1ME1|LINE|L1 -117372 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 639-82 chr3 108742853 108743178 + 3 NA Intergenic Intergenic 14268 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 525-67 chr13 92012594 92012812 + 3 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 339504 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 409-253 chr5 121087749 121087980 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -234686 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 667-20 chr11 20833314 20833686 + 3 NA intron (NM_001288714, intron 3 of 18) L2b|LINE|L2 163914 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 603-75 chr19 53628149 53628584 + 3 NA Intergenic Intergenic -3690 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 612-17 chr10 66002207 66002540 + 3 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 430948 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 667-61 chr22_KI270738v1_random 50541 50909 + 3 NA NA Intergenic NA NA 462-201 chr4 56253300 56253502 + 3 NA intron (NM_020722, intron 2 of 10) MIR3|SINE|MIR 83206 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 374-159 chr18 74869097 74869347 + 3 NA intron (NM_017757, intron 3 of 7) intron (NM_017757, intron 3 of 7) 238259 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 448-105 chr2 21346562 21346856 + 3 NA Intergenic Intergenic 222723 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 394-252 chr5 6470591 6470810 + 3 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 21841 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 454-55 chr11 59423339 59423619 + 3 NA promoter-TSS (NM_001001954) promoter-TSS (NM_001001954) -526 NM_001001954 219981 Hs.553648 NM_001001954 ENSG00000172324 OR5A2 - olfactory receptor family 5 subfamily A member 2 protein-coding 688-49 chr15 61704095 61704598 + 3 NA Intergenic L1MC4a|LINE|L1 -25572 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 510-266 chr7 99864231 99864434 + 3 NA intron (NR_103869, intron 13 of 13) intron (NR_103869, intron 13 of 13) 12701 NM_001005276 81392 Hs.647523 NM_001005276 ENSG00000244623 OR2AE1 OR2AE2 olfactory receptor family 2 subfamily AE member 1 protein-coding 431-186 chr3 155055148 155055339 + 3 NA intron (NM_001354642, intron 1 of 22) L1ME3A|LINE|L1 -24429 NM_000902 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 508-161 chr3 193750998 193751276 + 3 NA Intergenic L1MEc|LINE|L1 92872 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 494-145 chr2 220291131 220291384 + 3 NA Intergenic Intergenic -384692 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 433-255 chr6 157091603 157091905 + 3 NA intron (NM_020732, intron 6 of 19) intron (NM_020732, intron 6 of 19) 55327 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 597-63 chr18 32799042 32799389 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -26192 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 503-62 chr11 114601809 114602099 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -6168 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 412-52 chr11 54830686 54830859 + 3 NA Intergenic ALR/Alpha|Satellite|centr 123940 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 479-231 chr7 64521240 64521516 + 3 NA exon (NM_178558, exon 4 of 4) exon (NM_178558, exon 4 of 4) 41693 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 550-63 chr13 53257518 53257781 + 3 NA Intergenic Intergenic -105749 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 588-153 chr8 11374607 11374911 + 3 NA intron (NR_026814, intron 1 of 6) L1PA13|LINE|L1 6357 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 447-124 chr2 68375566 68375807 + 3 NA intron (NM_002664, intron 1 of 8) intron (NM_002664, intron 1 of 8) 10404 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 434-81 chr14 53095772 53096020 + 3 NA intron (NM_030637, intron 2 of 11) intron (NM_030637, intron 2 of 11) 57427 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 374-364 chr7 94223284 94223441 + 3 NA Intergenic Intergenic 168830 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 797-17 chr15 87256217 87256703 + 3 NA Intergenic Intergenic -268034 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 302-170 chr17 55083376 55083551 + 3 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -114678 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 494-119 chr2 13554595 13554778 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -547673 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 234-66 chr11 107640846 107640967 + 3 NA intron (NM_001308018, intron 7 of 12) intron (NM_001308018, intron 7 of 12) 49759 NM_018712 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 235-290 chr5 96442774 96442881 + 3 NA intron (NR_130776, intron 4 of 4) (CTT)n|Simple_repeat|Simple_repeat -9579 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 571-7 chr1 205725674 205725976 + 3 NA intron (NM_022731, intron 3 of 6) intron (NM_022731, intron 3 of 6) 24357 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 519-10 chr1 91543990 91544279 + 3 NA Intergenic L1ME1|LINE|L1 43026 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 227-296 chr5 151306297 151306389 + 3 NA Intergenic L2c|LINE|L2 -2577 NM_001145017 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 587-24 chr11 41232463 41232690 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 227060 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 535-27 chr10 54998164 54998383 + 3 NA intron (NM_001354404, intron 3 of 34) LOR1-int|LTR|ERV1 -196982 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 546-84 chr16 65213722 65213953 + 3 NA Intergenic Intergenic -37264 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 528-88 chr14 86282404 86282609 + 3 NA Intergenic Intergenic 347828 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 315-324 chr3 185073658 185073826 + 3 NA Intergenic AluJb|SINE|Alu 79318 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 622-39 chr16 65860545 65860839 + 3 NA Intergenic Intergenic -284392 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 439-48 chr11 26788653 26788881 + 3 NA Intergenic Intergenic -66707 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 799-2 chr1 49193999 49194439 + 3 NA intron (NM_001323575, intron 4 of 12) L1M2|LINE|L1 -63192 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 441-182 chr4 74582790 74582993 + 3 NA Intergenic L2a|LINE|L2 137755 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 589-152 chr7 68615382 68615663 + 3 NA Intergenic Intergenic 595269 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 535-43 chr11 91157814 91158048 + 3 NA Intergenic Intergenic -288729 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 528-171 chr3 181232524 181232721 + 3 NA TTS (NR_004394).9 TTS (NR_004394).9 885 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 419-75 chr12 63752696 63752972 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -27075 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 502-277 chr8 128488534 128488771 + 3 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 76027 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 517-86 chr15 93323361 93323608 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 117418 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 408-296 chr6 96328893 96329073 + 3 NA Intergenic Intergenic -192823 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 761-16 chr14 86691525 86691972 + 3 NA Intergenic Intergenic -214030 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 823-5 chr10 7543280 7543905 + 3 NA Intergenic Intergenic 76081 NM_032817 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 507-108 chr19 16815438 16815741 + 3 NA 3' UTR (NM_001290355, exon 21 of 21) 3' UTR (NM_001290355, exon 21 of 21) -13809 NM_015260 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 507-94 chr15 61766842 61767042 + 3 NA Intergenic Intergenic 37024 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 1067-5 chr13 70501744 70502243 + 3 NA Intergenic L1MA9|LINE|L1 -393500 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 191-123 chr20 32805957 32806051 + 3 NA intron (NM_175848, intron 20 of 21) intron (NM_175848, intron 20 of 21) -13950 NM_012325 22919 Hs.472437 NM_012325 ENSG00000101367 MAPRE1 EB1 microtubule associated protein RP/EB family member 1 protein-coding 450-156 chr2 171409033 171409295 + 3 NA intron (NM_024770, intron 1 of 9) intron (NM_024770, intron 1 of 9) 24826 NM_001321154 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 473-162 chr21 23034105 23034359 + 3 NA Intergenic L1MA2|LINE|L1 -45052 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 616-114 chr4 12494448 12494676 + 3 NA Intergenic Intergenic 271111 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 485-181 chr3 60848078 60848373 + 3 NA intron (NM_001320900, intron 4 of 9) intron (NM_001320900, intron 4 of 9) -230355 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 906-7 chr10 54840714 54841110 + 3 NA intron (NM_001354404, intron 4 of 34) L1M4|LINE|L1 -39621 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 667-124 chr8 144937624 144937867 + 3 NA intron (NM_006958, intron 2 of 2) AluJo|SINE|Alu 13135 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 797-9 chr11 39730787 39731353 + 3 NA Intergenic Intergenic 562060 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 271-301 chr4 43432143 43432318 + 3 NA Intergenic L1M5|LINE|L1 60313 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 218-329 chr8 98732938 98733059 + 3 NA intron (NM_006281, intron 4 of 10) intron (NM_006281, intron 4 of 10) 92673 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 544-148 chr3 78265544 78265883 + 3 NA Intergenic L1MA4A|LINE|L1 -216750 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 498-7 chr1 77260469 77260774 + 3 NA Intergenic Intergenic -21398 NM_174858 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 558-232 chr9 72831120 72831471 + 3 NA intron (NM_138691, intron 23 of 23) intron (NM_138691, intron 23 of 23) 42814 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 550-50 chr12 13615796 13616088 + 3 NA intron (NM_000834, intron 5 of 12) L1ME3A|LINE|L1 -239197 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 384-231 chr3 95329414 95329615 + 3 NA Intergenic L1PB3|LINE|L1 353679 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 868-10 chr14 44345797 44346320 + 3 NA Intergenic Intergenic 161225 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 746-45 chr20 42133432 42133895 + 3 NA intron (NM_133170, intron 19 of 31) L1MC2|LINE|L1 -515286 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 813-48 chr8 70958600 70959028 + 3 NA Intergenic MIR|SINE|MIR 289475 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 324-419 chr5 30285969 30286177 + 3 NA Intergenic L1M2|LINE|L1 405513 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 493-198 chr3 59875785 59876075 + 3 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) 204979 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 496-84 chr14 61942083 61942451 + 3 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 14572 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 422-39 chr10 133449152 133449355 + 3 NA Intergenic L1MA5|LINE|L1 -4675 NR_149718 619207 Hs.659384 NM_001033584 ENSG00000214279 SCART1 - scavenger receptor family member expressed on T cells 1 pseudo 655-67 chr2 226204787 226205162 + 3 NA Intergenic L1M3|LINE|L1 62180 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 299-183 chr18 73620837 73621015 + 3 NA Intergenic MIRb|SINE|MIR 295985 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 587-121 chr4 90262207 90262455 + 3 NA intron (NM_207491, intron 1 of 7) L1PB2|LINE|L1 27300 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 554-123 chr2 157375679 157375907 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 4716 NR_034169 728066 Hs.470311 NR_034169 FAM133DP - family with sequence similarity 133, member A pseudogene pseudo 429-159 chr2 115836749 115837029 + 3 NA intron (NM_001321912, intron 25 of 25) intron (NM_001321912, intron 25 of 25) 493074 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 355-431 chr6 50515228 50515382 + 3 NA Intergenic AluJb|SINE|Alu -198239 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 400-347 chr8 107745344 107745485 + 3 NA Intergenic Intergenic -247496 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 474-80 chr14 58636764 58636965 + 3 NA intron (NR_046093, intron 1 of 3) intron (NR_046093, intron 1 of 3) -1098 NM_001079520 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 376-244 chr3 56563565 56563716 + 3 NA intron (NM_001353152, intron 4 of 18) intron (NM_001353152, intron 4 of 18) 6465 NM_001141947 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 196-60 chr12 42418281 42418350 + 3 NA intron (NM_016488, intron 9 of 12) intron (NM_016488, intron 9 of 12) 65300 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 635-55 chr2 85834877 85835272 + 3 NA Intergenic L1MA4|LINE|L1 19097 NM_001354248 8869 Hs.415117 NM_003896 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 534-40 chr11 25016522 25016786 + 3 NA intron (NM_001009909, intron 9 of 11) L1PB3|LINE|L1 519601 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 476-41 chr10 131216339 131216604 + 3 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 95250 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 509-33 chr10 130396157 130396410 + 3 NA Intergenic Intergenic 259874 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 1034-5 chr10 35685851 35686453 + 3 NA Intergenic AluSx|SINE|Alu -44718 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 242-411 chr8 124657953 124658106 + 3 NA intron (NM_001282971, intron 3 of 14) MLT1A0|LTR|ERVL-MaLR 70444 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 519-24 chr10 44193855 44194083 + 3 NA Intergenic Intergenic -98781 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 1124 chr10 41888618 41889253 + 3 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 479110 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 575-205 chr8 136379352 136379596 + 3 NA Intergenic L1PB1|LINE|L1 -151324 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 495-146 chr22 41764671 41764842 + 3 NA intron (NM_152513, intron 19 of 30) intron (NM_152513, intron 19 of 30) -35866 NM_001304797 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 352-548 chr8 138402145 138402294 + 3 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 95042 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 255-144 chr16 51787642 51787744 + 3 NA Intergenic Intergenic 25174 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 383-288 chr4 85049811 85050024 + 3 NA Intergenic L1ME1|LINE|L1 82433 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 440-156 chr3 21971315 21971594 + 3 NA intron (NR_046876, intron 2 of 3) L1MA3|LINE|L1 14315 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 231-74 chr12 122381334 122381418 + 3 NA intron (NM_198240, intron 1 of 23) intron (NM_198240, intron 1 of 23) -14166 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 677-66 chr5 26075036 26075384 + 3 NA Intergenic Intergenic 884257 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 565-140 chr5 44038828 44039171 + 3 NA Intergenic L1PA11|LINE|L1 -349733 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 321-136 chr12 75435397 75435551 + 3 NA Intergenic L1PA15-16|LINE|L1 44385 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 545-124 chr2 172346494 172346844 + 3 NA Intergenic Intergenic -80667 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 192-192 chr7 53700910 53701007 + 3 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 110973 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 952-16 chr2 221774877 221775374 + 3 NA Intergenic Intergenic -200923 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 505-76 chr13 91240372 91240718 + 3 NA Intergenic Intergenic -28847 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 584-20 chr10 74023891 74024264 + 3 NA intron (NM_014000, intron 1 of 21) intron (NM_014000, intron 1 of 21) 25961 NM_003373 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 716-42 chr20 48354830 48355285 + 3 NA Intergenic Intergenic -4854 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 536-222 chr8 16102315 16102724 + 3 NA Intergenic Intergenic 83753 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 411-38 chr10 93174434 93174596 + 3 NA Intergenic Intergenic 100622 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 851-10 chr14 53197190 53197736 + 3 NA Intergenic L1ME4b|LINE|L1 44109 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 458-107 chr18 13279605 13279802 + 3 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 1598 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 324-570 chr9 94748057 94748237 + 3 NA intron (NM_001193331, intron 1 of 7) L1MEf|LINE|L1 -11502 NM_001193329 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 471-242 chr6 159307978 159308235 + 3 NA Intergenic Intergenic -75425 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 307-401 chr5 136906263 136906456 + 3 NA Intergenic Intergenic -221838 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 373-231 chr20 10258230 10258458 + 3 NA intron (NM_001322908, intron 3 of 9) LTR37B|LTR|ERV1 -38838 NR_040710 100131208 Hs.658178 NR_040710 ENSG00000227906 SNAP25-AS1 - SNAP25 antisense RNA 1 ncRNA 434-313 chr9 29825718 29825946 + 3 NA Intergenic Intergenic 582622 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 514-198 chr4 47395012 47395301 + 3 NA intron (NM_000812, intron 5 of 8) MSTA|LTR|ERVL-MaLR 68546 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 404-51 chr10 88003652 88003859 + 3 NA Intergenic Intergenic 140130 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 507-139 chr2 160628813 160629019 + 3 NA Intergenic MIRb|SINE|MIR -135109 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 622-96 chr4 80566160 80566548 + 3 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 230634 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 777-28 chr18 1916883 1917281 + 3 NA Intergenic Intergenic -557453 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1009-15 chr5 54116539 54116956 + 3 NA intron (NM_019087, intron 3 of 4) MIR|SINE|MIR -165148 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 464-31 chr11 28863019 28863224 + 3 NA Intergenic Intergenic -385573 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 510-282 chr8 126265597 126265812 + 3 NA Intergenic LTR86A2|LTR|ERVL -59791 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 383-331 chr5 174989584 174989787 + 3 NA intron (NR_046113, intron 1 of 2) Charlie7a|DNA|hAT-Charlie 6046 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 277-86 chr12 10625500 10625664 + 3 NA intron (NM_018423, intron 7 of 10) intron (NM_018423, intron 7 of 10) -11973 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 415-120 chr2 47482179 47482350 + 3 NA intron (NM_000251, intron 15 of 15) intron (NM_000251, intron 15 of 15) -45273 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 390-292 chr5 50793575 50793782 + 3 NA intron (NM_024615, intron 10 of 25) intron (NM_024615, intron 10 of 25) 126264 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 371-126 chr16 27037796 27038034 + 3 NA Intergenic L1MD|LINE|L1 -29012 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 372-452 chr7 32329103 32329337 + 3 NA intron (NM_001322059, intron 1 of 17) AluJb|SINE|Alu -29892 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 440-143 chr21 21809966 21810162 + 3 NA Intergenic Intergenic 63079 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 530-169 chr3 110488651 110488945 + 3 NA Intergenic L2a|LINE|L2 581161 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 453 chr1 4951331 4951528 + 3 NA Intergenic Intergenic 296820 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 454-135 chr2 6193301 6193562 + 3 NA Intergenic Intergenic 181991 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 443-56 chr11 80467664 80467824 + 3 NA Intergenic Intergenic 295059 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 400-231 chr3 155406463 155406612 + 3 NA Intergenic L1M2|LINE|L1 -79266 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 530-185 chr4 140748735 140749058 + 3 NA intron (NM_015130, intron 1 of 20) L1ME3B|LINE|L1 7489 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 650-110 chr6 123179197 123179682 + 3 NA Intergenic HAL1|LINE|L1 183204 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 692-38 chr17 17058326 17058835 + 3 NA intron (NM_201274, intron 1 of 23) intron (NM_201274, intron 1 of 23) 15820 NM_015134 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 356-405 chr5 102518648 102518848 + 3 NA Intergenic Intergenic -19747 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 256-224 chr2 172258721 172258860 + 3 NA Intergenic Intergenic 155784 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 564-119 chr22 34328612 34328944 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -405890 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 719-71 chr6 165134332 165134704 + 3 NA Intergenic Intergenic 175087 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 544-240 chrX 50449611 50449925 + 3 NA intron (NM_001013742, intron 1 of 27) intron (NM_001013742, intron 1 of 27) 21057 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 548-59 chr12 118900292 118900630 + 3 NA Intergenic Intergenic -66925 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 954-11 chr12 124063304 124063791 + 3 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 90332 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 336-488 chr6 54928753 54928898 + 3 NA intron (NM_001010872, intron 4 of 4) intron (NM_001010872, intron 4 of 4) 82054 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 129-38 chr2 101483481 101483549 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -8403 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 485-90 chr15 67286139 67286307 + 3 NA intron (NM_001322475, intron 3 of 17) L1PA13|LINE|L1 -31025 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 510-107 chr17 67093482 67093785 + 3 NA intron (NM_001330447, intron 31 of 32) MER3|DNA|hAT-Charlie 49079 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 460-150 chr2 146380853 146381017 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -206122 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 484-40 chr11 84035109 84035358 + 3 NA intron (NM_001142699, intron 11 of 27) L2a|LINE|L2 238047 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 444-186 chr5 7029834 7030048 + 3 NA Intergenic Intergenic -202020 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 671-88 chr7 29578861 29579211 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR 13503 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 695-34 chr14 81831379 81831756 + 3 NA Intergenic Intergenic -88429 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 539-223 chrX 138066740 138066930 + 3 NA Intergenic Intergenic 500708 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 487-297 chr8 130689451 130689721 + 3 NA Intergenic Intergenic -245912 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 579-134 chr5 163614895 163615135 + 3 NA Intergenic UCON105|Unknown|Unknown 109396 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 552-34 chr11 87964566 87964765 + 3 NA Intergenic Intergenic 210778 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 538-67 chr14 54190506 54190796 + 3 NA Intergenic Intergenic -206217 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 842-25 chr2 180880323 180880656 + 3 NA intron (NR_104324, intron 4 of 4) L1M4a1|LINE|L1 -99896 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 372-384 chr5 8925755 8925959 + 3 NA Intergenic L1MA2|LINE|L1 86125 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 517-18 chr1 195210298 195210527 + 3 NA Intergenic L1MC1|LINE|L1 878303 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 839-37 chr4 9953317 9953659 + 3 NA intron (NM_001001290, intron 6 of 12) MIRb|SINE|MIR 68009 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 454-87 chr14 47460622 47460930 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -117530 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 870-32 chr5 94171921 94172498 + 3 NA intron (NM_001145678, intron 20 of 20) MIR3|SINE|MIR -60510 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 384-307 chr5 156612159 156612350 + 3 NA intron (NM_001128209, intron 5 of 7) L1MA6|LINE|L1 -238041 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 555-132 chr3 107017698 107018048 + 3 NA Intergenic L1MB1|LINE|L1 222765 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 290-56 chr10 76623776 76623964 + 3 NA Intergenic Intergenic -264174 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 487-68 chr12 76897685 76897879 + 3 NA Intergenic AluJo|SINE|Alu -18763 NM_001300965 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 476-210 chr5 27109864 27110105 + 3 NA Intergenic Intergenic -71398 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 414-129 chr18 3007839 3007982 + 3 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 4037 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 955-20 chr7 45308318 45308952 + 3 NA Intergenic L1M2|LINE|L1 150844 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 781-67 chr8 127411036 127411472 + 3 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) -4571 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 459-107 chr17 52940623 52940904 + 3 NA Intergenic L1M4b|LINE|L1 -44742 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 377-170 chr18 52102842 52102981 + 3 NA Intergenic Intergenic -237286 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 460-130 chr2 8175288 8175474 + 3 NA intron (NR_034135, intron 7 of 8) L1MDa|LINE|L1 153038 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 489-199 chr4 173623683 173623907 + 3 NA Intergenic L1M2|LINE|L1 93337 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 726-69 chr6 158329950 158330278 + 3 NA intron (NM_020245, intron 1 of 13) MER33|DNA|hAT-Charlie 7132 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 270-287 chr5 17333965 17334113 + 3 NA Intergenic MLT2B1|LTR|ERVL 53271 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 317-93 chr11 112875228 112875392 + 3 NA Intergenic Intergenic -86110 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 272-62 chr10 104835456 104835593 + 3 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -169308 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 399-327 chr9 75282022 75282179 + 3 NA Intergenic L1MC5a|LINE|L1 193586 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 409-282 chr7 42579819 42580076 + 3 NA Intergenic L1MEf|LINE|L1 126500 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 519-217 chr7 109733633 109733901 + 3 NA Intergenic Intergenic 226446 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 666-110 chr8 43572441 43572861 + 3 NA Intergenic ALR/Alpha|Satellite|centr 280209 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 273-94 chr12 13777204 13777362 + 3 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 203073 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 528-164 chr3 119136340 119136667 + 3 NA intron (NM_152538, intron 1 of 8) L1MA3|LINE|L1 9517 NM_152538 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 475-221 chr5 25874170 25874412 + 3 NA Intergenic L1MA3|LINE|L1 683338 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 684-10 chr1 195238677 195239149 + 3 NA Intergenic Intergenic 849802 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 406-54 chr11 115870117 115870290 + 3 NA Intergenic L1MA4A|LINE|L1 -110003 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 486-167 chr20 19236230 19236442 + 3 NA intron (NM_020689, intron 1 of 16) intron (NM_020689, intron 1 of 16) 23694 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 769-17 chr14 66729232 66729704 + 3 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 222061 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 478-164 chr20 56153524 56153697 + 3 NA Intergenic Intergenic -95122 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 412-107 chr16 22984923 22985113 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X 164252 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 896-5 chr12 13581981 13582315 + 3 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -205403 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 344-71 chr10 131796168 131796382 + 3 NA Intergenic L1MC1|LINE|L1 -6076 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 366-217 chr2 134874703 134874879 + 3 NA intron (NM_001307983, intron 8 of 9) HAL1|LINE|L1 16971 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 510-91 chr15 85980993 85981257 + 3 NA Intergenic Intergenic -98495 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 490-311 chr9 30086946 30087281 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 321341 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 780-3 chr1 67076927 67077350 + 3 NA Intergenic Intergenic -22990 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 437-120 chr2 8981069 8981348 + 3 NA intron (NR_135603, intron 1 of 13) L1MB8|LINE|L1 22476 NR_135606 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 631-72 chr2 117108350 117108579 + 3 NA Intergenic L1PREC2|LINE|L1 -706227 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 416-108 chr13 82713633 82713815 + 3 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 1168669 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 323-144 chr14 62468391 62468607 + 3 NA Intergenic Intergenic -328526 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 913-30 chr4 159587016 159587550 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 190501 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 662-55 chr21 18710004 18710288 + 3 NA intron (NR_109925, intron 2 of 3) L1MA6|LINE|L1 -23982 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 512-126 chr2 114959389 114959604 + 3 NA intron (NM_001321910, intron 2 of 26) L1MB7|LINE|L1 -105077 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 266-376 chr6 134996637 134996774 + 3 NA intron (NM_006620, intron 7 of 17) intron (NM_006620, intron 7 of 17) -17273 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 299-141 chr14 76655529 76655739 + 3 NA Intergenic Intergenic -105834 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 561-162 chr5 63566789 63567115 + 3 NA Intergenic MER52-int|LTR|ERV1 395340 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 441-75 chr14 48356069 48356391 + 3 NA Intergenic Intergenic -561216 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 357-78 chr12 5136967 5137131 + 3 NA Intergenic MIRb|SINE|MIR 93170 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 452-125 chr2 61749142 61749368 + 3 NA Intergenic Intergenic 104805 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 1086-20 chr9 88288288 88288900 + 3 NA Intergenic AluY|SINE|Alu -99850 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 463-215 chr4 142971464 142971713 + 3 NA Intergenic LTR40a|LTR|ERVL -125053 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 453-258 chr7 67701441 67701704 + 3 NA Intergenic L1M3|LINE|L1 -318681 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 1018-4 chr10 30923046 30923580 + 3 NA 5' UTR (NM_001143771, exon 3 of 8) 5' UTR (NM_001143771, exon 3 of 8) 76204 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 520-108 chr16 51683434 51683613 + 3 NA Intergenic Intergenic -78996 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 478-12 chr1 187993059 187993319 + 3 NA Intergenic Intergenic 549561 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 542-69 chr15 79113261 79113663 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -22682 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 432-134 chr2 119897388 119897687 + 3 NA intron (NM_002830, intron 9 of 26) HAL1M8|LINE|L1 -115540 NM_001184938 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 640-78 chr22 34459939 34460241 + 3 NA Intergenic Intergenic -537202 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 675-64 chr4 36372265 36372603 + 3 NA Intergenic MER65-int|LTR|ERV1 53994 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 393-28 chr1 219392555 219392727 + 3 NA Intergenic Intergenic 164683 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 550-152 chr3 168151350 168151648 + 3 NA Intergenic L1PB4|LINE|L1 -55575 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 540-42 chr11 102630803 102631009 + 3 NA Intergenic Intergenic -5574 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 471-63 chr12 24107603 24107812 + 3 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -104714 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 738-36 chr2 160571821 160572216 + 3 NA Intergenic Intergenic -78211 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 624-10 chr1 216332288 216332611 + 3 NA intron (NM_206933, intron 4 of 71) L1M4|LINE|L1 90947 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 573-201 chr8 124509703 124510175 + 3 NA intron (NM_001317891, intron 3 of 8) AluSz|SINE|Alu -1363 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 565-127 chr4 41026559 41026855 + 3 NA intron (NM_173075, intron 5 of 16) L1MB7|LINE|L1 -169515 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 566-167 chr6 120003346 120003612 + 3 NA Intergenic Intergenic -11700 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 967-14 chr20 54367705 54368217 + 3 NA Intergenic Intergenic -107632 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 645-43 chr17 66015530 66015876 + 3 NA intron (NM_001353129, intron 16 of 26) L1M6|LINE|L1 176189 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 467-2 chr1 37147964 37148147 + 3 NA Intergenic Intergenic -13508 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 367-232 chr2 192350918 192351113 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -156082 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 725-8 chr10 39143240 39143703 + 3 NA Intergenic ALR/Alpha|Satellite|centr 446875 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 431-307 chr8 134723818 134723984 + 3 NA Intergenic Intergenic -10870 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 598-80 chr2 239354582 239354887 + 3 NA intron (NM_006037, intron 1 of 26) intron (NM_006037, intron 1 of 26) -2930 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 455-9 chr1 102253408 102253562 + 3 NA Intergenic L1MC1|LINE|L1 -256251 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 291-74 chr11 62058259 62058461 + 3 NA Intergenic Intergenic -65651 NM_001040694 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 332-468 chr7 4553321 4553465 + 3 NA Intergenic L1M2c|LINE|L1 -128902 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 793-28 chr2 56697119 56697432 + 3 NA Intergenic L1ME1|LINE|L1 -511505 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 605-33 chr16 26020110 26020336 + 3 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -5014 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 608-77 chr2 149976570 149976894 + 3 NA Intergenic L1MC3|LINE|L1 -117541 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 480-190 chr3 105781694 105781969 + 3 NA intron (NR_135809, intron 3 of 18) intron (NR_135809, intron 3 of 18) 85760 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 456-3 chr1 58832034 58832205 + 3 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 46968 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 285-324 chr5 12439787 12439945 + 3 NA Intergenic Intergenic -134991 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 525-80 chr15 79738908 79739095 + 3 NA Intergenic Intergenic 157996 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 1639 chr10 70031202 70032130 + 3 NA Intergenic L1MEc|LINE|L1 -21180 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 536-225 chr8 27141630 27141970 + 3 NA Intergenic Intergenic -92837 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 491-100 chr18 13172662 13172889 + 3 NA Intergenic Intergenic -45985 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 685-5 chr10 16369250 16369664 + 3 NA Intergenic Intergenic -67486 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 547-109 chr2 135332257 135332584 + 3 NA intron (NM_001286569, intron 6 of 21) L2a|LINE|L2 195792 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 855-22 chr18 2194133 2194629 + 3 NA Intergenic Intergenic 377124 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 388-72 chr11 125842706 125842956 + 3 NA Intergenic LTR33A|LTR|ERVL 9515 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 439-111 chr17 70910294 70910538 + 3 NA Intergenic L1MA4A|LINE|L1 291763 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 743-8 chr1 192716671 192717042 + 3 NA TTS (NR_039624) TTS (NR_039624) 528 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 941-24 chr5 180937594 180938260 + 3 NA intron (NM_001159710, intron 2 of 6) L1MA4A|LINE|L1 28363 NM_001159710 79908 Hs.189109 NM_024850 ENSG00000113303 BTNL8 BTN9.2 butyrophilin like 8 protein-coding 457-33 chr10 120678590 120678799 + 3 NA Intergenic Intergenic 80745 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 614-43 chr18 5809082 5809392 + 3 NA Intergenic L1M2|LINE|L1 -31458 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 606-16 chr10 26816620 26816884 + 3 NA intron (NM_001012752, intron 2 of 9) Tigger6a|DNA|TcMar-Tigger 44335 NM_001348029 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 415-310 chrX 56467717 56467874 + 3 NA Intergenic L1PBa|LINE|L1 -95798 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 333-476 chr5 145129293 145129522 + 3 NA Intergenic L1ME3Cz|LINE|L1 705935 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 317-53 chr10 65989414 65989553 + 3 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 418058 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 665-12 chr10 62310037 62310466 + 3 NA Intergenic Intergenic -41407 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 443-184 chr20 52428298 52428579 + 3 NA Intergenic MamGypLTR2b|LTR|Gypsy -192400 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 545-3 chr1 36658268 36658557 + 3 NA Intergenic Intergenic -175098 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 589-112 chr4 82303897 82304304 + 3 NA Intergenic AluSz|SINE|Alu 69891 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 541-253 chr9 29573977 29574207 + 3 NA Intergenic Intergenic -360491 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 938-14 chr2 48267332 48267773 + 3 NA Intergenic Intergenic -47130 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 349-502 chr8 85249099 85249290 + 3 NA intron (NM_198584, intron 1 of 6) intron (NM_198584, intron 1 of 6) 3736 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 518-126 chr2 44592690 44592962 + 3 NA intron (NM_024766, intron 3 of 10) L1MEc|LINE|L1 230879 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 671-18 chr11 91937596 91937964 + 3 NA Intergenic Intergenic -287254 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 633-93 chr4 177731878 177732311 + 3 NA intron (NR_028342, intron 1 of 5) L1ME1|LINE|L1 3337 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 644-96 chr7 49676762 49677083 + 3 NA Intergenic L1ME3B|LINE|L1 -96716 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 497-197 chr4 36744261 36744427 + 3 NA Intergenic L1MC|LINE|L1 -102444 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 528-30 chr10 33372343 33372542 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -37537 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 445-3 chr1 60136203 60136362 + 3 NA Intergenic L1MEg|LINE|L1 -62512 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 352-574 chrX 67849944 67850121 + 3 NA Intergenic L1M4c|LINE|L1 305409 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 800-45 chr4 16663260 16663792 + 3 NA intron (NM_001304435, intron 2 of 7) intron (NM_001304435, intron 2 of 7) 235119 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 566-132 chr3 118035863 118036097 + 3 NA Intergenic Intergenic -345055 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 802-25 chr18 12099480 12099884 + 3 NA exon (NM_001277333, exon 6 of 14) exon (NM_001277333, exon 6 of 14) 5839 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 1023 chr1 31859685 31860302 + 3 NA Intergenic MLT2B3|LTR|ERVL -43942 NM_144569 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 467-193 chr3 180183745 180184025 + 3 NA Intergenic Intergenic -146948 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 672-84 chr5 6867439 6867754 + 3 NA Intergenic Intergenic -39675 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 736-84 chr8 10741649 10742077 + 3 NA intron (NR_146188, intron 1 of 2) L1MCa|LINE|L1 -11352 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box transcription factor 7 protein-coding 292-378 chr6 46683520 46683669 + 3 NA intron (NR_144468, intron 1 of 3) L1ME1|LINE|L1 3326 NR_144468 221400 Hs.656983 NM_001010870 ENSG00000180113 TDRD6 CT41.2|NY-CO-45|SPATA36|TDR2|bA446F17.4 tudor domain containing 6 protein-coding 422-260 chr6 69245180 69245397 + 3 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 551178 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 699-77 chr4 111028581 111028997 + 3 NA Intergenic L1MB5|LINE|L1 -168142 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 287-84 chr11 29687681 29687812 + 3 NA Intergenic L2c|LINE|L2 68944 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 521-13 chr1 190682913 190683278 + 3 NA intron (NR_033922, intron 1 of 4) L1MCb|LINE|L1 58205 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 866-2 chr1 152722496 152722897 + 3 NA Intergenic Intergenic 3174 NM_001024679 100129271 Hs.601077 NM_001024679 ENSG00000198854 C1orf68 LEP7|XP32 chromosome 1 open reading frame 68 protein-coding 443-159 chr2 184289921 184290093 + 3 NA Intergenic Intergenic -88968 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 760-78 chr9 88497557 88497978 + 3 NA Intergenic Intergenic -37334 NM_001161625 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 542-29 chr10 106768303 106768637 + 3 NA intron (NM_001206569, intron 4 of 25) intron (NM_001206569, intron 4 of 25) 396236 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 330-342 chr3 31122609 31122776 + 3 NA Intergenic L1MC5a|LINE|L1 39095 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 500-2 chr1 18753290 18753581 + 3 NA Intergenic Intergenic 106226 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 580-144 chr4 109009289 109009687 + 3 NA intron (NM_198721, intron 5 of 36) intron (NM_198721, intron 5 of 36) -246435 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 385-347 chr7 1685342 1685516 + 3 NA Intergenic L1MB8|LINE|L1 -2690 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 601-30 chr12 61268613 61268955 + 3 NA Intergenic AluSx|SINE|Alu 924055 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 539-168 chr5 65392204 65392512 + 3 NA intron (NR_135689, intron 7 of 25) L1MC4|LINE|L1 89562 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 339-363 chr3 76732186 76732358 + 3 NA Intergenic Intergenic -307827 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 428-321 chr9 98415472 98415667 + 3 NA intron (NM_005458, intron 7 of 18) MIR1_Amn|SINE|MIR -159920 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 428-210 chr4 69529910 69530164 + 3 NA Intergenic HERVL-int|LTR|ERVL -4023 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 802-5 chr10 5204228 5204703 + 3 NA exon (NM_001818, exon 3 of 9) exon (NM_001818, exon 3 of 9) 7628 NM_001818 1109 Hs.567245 NM_001818 ENSG00000198610 AKR1C4 3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA aldo-keto reductase family 1 member C4 protein-coding 514-218 chr5 19627349 19627588 + 3 NA intron (NM_001349562, intron 5 of 13) MER63C|DNA|hAT-Blackjack 258804 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 527-89 chr14 68454924 68455139 + 3 NA intron (NM_133509, intron 9 of 10) L1M4|LINE|L1 173756 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 377-318 chr5 35411924 35412105 + 3 NA Intergenic L2c|LINE|L2 -181527 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 454-16 chr1 247380192 247380490 + 3 NA Intergenic L1MA7|LINE|L1 -35815 NM_001127461 114548 Hs.159483 NM_004895 ENSG00000162711 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1 NLR family pyrin domain containing 3 protein-coding 504-97 chr17 34079630 34079862 + 3 NA intron (NM_001094, intron 1 of 9) MER96|DNA|hAT-Tip100 77060 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 158-84 chr4 62969394 62969475 + 3 NA Intergenic Intergenic -807669 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 384-139 chr16 76226019 76226226 + 3 NA Intergenic Intergenic -51279 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 243-104 chr12 113493746 113493848 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 21794 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 560-70 chr18 5274916 5275211 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie 20663 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 375-26 chr1 217143158 217143404 + 3 NA Intergenic Intergenic -5579 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 637-20 chr11 39222734 39223066 + 3 NA Intergenic Intergenic 574042 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 447-246 chr7 34782804 34783013 + 3 NA intron (NM_207172, intron 3 of 8) L1M4|LINE|L1 -24636 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 668-88 chr6 40654565 40654977 + 3 NA Intergenic MIR|SINE|MIR -67407 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 421-277 chr7 26392617 26392795 + 3 NA intron (NR_136272, intron 1 of 1) intron (NR_136272, intron 1 of 1) -5863 NR_148500 441204 Hs.587432 NR_015364 ENSG00000214870 LOC441204 - uncharacterized LOC441204 ncRNA 948-32 chr6 135637181 135637700 + 3 NA intron (NR_152845, intron 2 of 4) Charlie6|DNA|hAT-Charlie 139639 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 771-3 chr1 198215286 198215624 + 3 NA intron (NM_133494, intron 1 of 9) MER30|DNA|hAT-Charlie 58457 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 286-50 chr10 100881647 100881784 + 3 NA Intergenic MIR|SINE|MIR -31248 NM_001243770 55719 Hs.447458 NM_018121 ENSG00000119906 SLF2 C10orf6|FAM178A SMC5-SMC6 complex localization factor 2 protein-coding 694-92 chr4 26226435 26226902 + 3 NA Intergenic Intergenic -93042 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 463-103 chr15 101687170 101687467 + 3 NA intron (NM_152334, intron 10 of 18) AluSx|SINE|Alu -34927 NM_025141 80213 Hs.288912 NM_025141 ENSG00000184277 TM2D3 BLP2 TM2 domain containing 3 protein-coding 679-82 chr4 118203111 118203501 + 3 NA intron (NM_004784, intron 6 of 13) L1PA16|LINE|L1 -75456 NR_034011 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 565-128 chr4 62778554 62778839 + 3 NA Intergenic Intergenic -616931 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 226-385 chr9 102287181 102287323 + 3 NA Intergenic L1ME2z|LINE|L1 -232385 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 977-11 chr21 21940329 21940786 + 3 NA Intergenic L2a|LINE|L2 157902 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 1295-2 chr14 66657686 66658572 + 3 NA intron (NM_001024218, intron 1 of 21) Tigger1|DNA|TcMar-Tigger 150722 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 371-5 chr1 52216320 52216486 + 3 NA 5' UTR (NM_004799, exon 2 of 19) 5' UTR (NM_004799, exon 2 of 19) 74309 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 562-76 chr17 29841183 29841452 + 3 NA intron (NM_033389, intron 1 of 14) L1ME3A|LINE|L1 -79885 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 489-147 chr2 160194282 160194607 + 3 NA intron (NM_001282390, intron 3 of 13) intron (NM_001282390, intron 3 of 13) 5828 NM_001282389 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 495-127 chr2 239740540 239740739 + 3 NA Intergenic L1ME2z|LINE|L1 -22221 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 576-20 chr10 105848447 105848811 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -28296 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 524-14 chr1 169394766 169394997 + 3 NA TTS (NM_001300968) TTS (NM_001300968) 26686 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 581-29 chr11 127527006 127527322 + 3 NA Intergenic Intergenic 256094 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 738-13 chr11 130508231 130508614 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 59448 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 745-66 chr6 103875673 103876130 + 3 NA Intergenic LTR48|LTR|ERV1 983645 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 512-213 chr5 46243171 46243492 + 3 NA Intergenic ALR/Alpha|Satellite|centr -546951 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 465-264 chr6 164759371 164759661 + 3 NA Intergenic L1MEc|LINE|L1 62547 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 742-21 chr12 118777581 118777948 + 3 NA Intergenic Intergenic -16085 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 412-197 chr22 26877921 26878148 + 3 NA intron (NR_146604, intron 4 of 5) intron (NR_146604, intron 4 of 5) 17823 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 465-25 chr10 36151631 36151799 + 3 NA Intergenic L1M5|LINE|L1 373413 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 387-318 chr6 131967469 131967635 + 3 NA Intergenic Intergenic -16180 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 610-2 chr1 43319137 43319387 + 3 NA exon (NM_005424, exon 18 of 23) exon (NM_005424, exon 18 of 23) 18280 NM_005424 7075 Hs.78824 NM_005424 ENSG00000066056 TIE1 JTK14|TIE tyrosine kinase with immunoglobulin like and EGF like domains 1 protein-coding 504-161 chr3 14904768 14905000 + 3 NA intron (NM_152536, intron 9 of 19) AluJr|SINE|Alu 42621 NR_046252 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 626-23 chr11 37280338 37280667 + 3 NA Intergenic Intergenic -658099 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 448-208 chr5 39491530 39491700 + 3 NA Intergenic L1ME3G|LINE|L1 -28816 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 464-176 chr3 189815415 189815584 + 3 NA intron (NM_003722, intron 4 of 13) intron (NM_003722, intron 4 of 13) -14423 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 1071-2 chr1 238829176 238829845 + 3 NA Intergenic LTR81B|LTR|Gypsy -343493 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 620 chr1 45049932 45050189 + 3 NA intron (NM_020883, intron 5 of 13) intron (NM_020883, intron 5 of 13) 37806 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 930-8 chr11 132336191 132336533 + 3 NA non-coding (NR_147848, exon 9 of 9) non-coding (NR_147848, exon 9 of 9) 52060 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 580-12 chr1 224157736 224158143 + 3 NA non-coding (NR_049764, exon 4 of 4) non-coding (NR_049764, exon 4 of 4) -25301 NM_001321541 8560 Hs.299878 NM_003676 ENSG00000143753 DEGS1 DEGS|DEGS-1|DES1|Des-1|FADS7|HLD18|MIG15|MLD delta 4-desaturase, sphingolipid 1 protein-coding 393-319 chr7 1792707 1792874 + 3 NA Intergenic Intergenic -50480 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 481-87 chr14 47699227 47699569 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -24444 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 449-215 chr5 106023640 106023966 + 3 NA Intergenic Intergenic 924329 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 502-26 chr10 11102398 11102713 + 3 NA intron (NR_046108, intron 1 of 6) intron (NR_046108, intron 1 of 6) 2933 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 208-243 chr7 26361382 26361516 + 3 NA intron (NM_001318199, intron 3 of 6) intron (NM_001318199, intron 3 of 6) 565 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 558-206 chr8 20675636 20675925 + 3 NA Intergenic Intergenic -60854 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 894-21 chr2 234750806 234751463 + 3 NA Intergenic L1MC4|LINE|L1 68466 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 853-46 chr8 138239811 138240479 + 3 NA intron (NM_015912, intron 7 of 19) L1PA5|LINE|L1 -156600 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 300-90 chr12 72529370 72529562 + 3 NA intron (NM_013381, intron 6 of 18) intron (NM_013381, intron 6 of 18) -255957 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 467-198 chr4 30526178 30526362 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -194099 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 530-273 chr9 31455173 31455499 + 3 NA Intergenic Intergenic -73846 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 504-155 chr21 28388169 28388428 + 3 NA Intergenic Intergenic -151020 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 520-79 chr14 36645503 36645767 + 3 NA Intergenic Intergenic -11933 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 669-115 chr8 91739608 91740034 + 3 NA Intergenic Intergenic 277859 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 301-149 chr16 71293867 71293977 + 3 NA Intergenic Intergenic -4200 NM_001324377 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 1129-20 chr8 81409199 81410024 + 3 NA Intergenic L1MA3|LINE|L1 37828 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 446-138 chr19 53150420 53150592 + 3 NA intron (NM_001172675, intron 2 of 4) intron (NM_001172675, intron 2 of 4) 8547 NM_032584 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 452-277 chr8 126685521 126685757 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR -127161 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 441-37 chr10 131803168 131803350 + 3 NA Intergenic Intergenic -13060 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 837-43 chr8 131713033 131713616 + 3 NA Intergenic MamRep605|LTR?|LTR? -190769 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 481-279 chr7 52375338 52375594 + 3 NA Intergenic Intergenic -660167 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 366-452 chr8 126703538 126703765 + 3 NA Intergenic L1PA16|LINE|L1 -145173 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 406-37 chr10 64932291 64932469 + 3 NA Intergenic Intergenic -7862 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 477-256 chr7 25727352 25727653 + 3 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 23530 NR_157815 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 695-85 chr5 159670981 159671425 + 3 NA Intergenic Intergenic 200181 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 748-65 chr4 59434815 59435342 + 3 NA Intergenic Intergenic 421505 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 370-65 chr10 107530420 107530629 + 3 NA Intergenic MIRb|SINE|MIR -365818 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 396-252 chr4 62077091 62077301 + 3 NA 3' UTR (NM_001322402, exon 26 of 26) 3' UTR (NM_001322402, exon 26 of 26) 84569 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1020-17 chr4 97191494 97192029 + 3 NA Intergenic Intergenic -175165 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 688-120 chrX 93299338 93299734 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 374042 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 428-119 chr2 33777845 33778089 + 3 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -49750 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 561-13 chr1 193989170 193989477 + 3 NA Intergenic L1MA4|LINE|L1 684578 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 463-251 chr6 50643459 50643693 + 3 NA Intergenic Intergenic -69968 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 802-32 chr2 115700456 115700898 + 3 NA intron (NM_001321912, intron 8 of 25) L1M4c|LINE|L1 356862 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 547-95 chr2 25884889 25885253 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -6584 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 518-294 chr8 31438153 31438489 + 3 NA Intergenic MER21-int|LTR|ERVL -201431 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 401-162 chr2 76642980 76643205 + 3 NA Intergenic Intergenic -342873 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 684-3 chr1 59195023 59195378 + 3 NA Intergenic Intergenic -48393 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 426-254 chr6 54631625 54631804 + 3 NA Intergenic Intergenic -215057 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 466-211 chr5 122788709 122788988 + 3 NA intron (NM_001278199, intron 1 of 14) L1ME1|LINE|L1 13768 NM_003100 6643 Hs.125352 NM_003100 ENSG00000205302 SNX2 TRG-9 sorting nexin 2 protein-coding 732-72 chr4 70924951 70925210 + 3 NA intron (NM_173468, intron 1 of 5) AluSx|SINE|Alu 22711 NM_173468 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 669-90 chr5 30636466 30636815 + 3 NA Intergenic L1MB1|LINE|L1 -557046 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 345-160 chr14 80219853 80220063 + 3 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -7780 NM_001324462 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 530-66 chr13 110027083 110027375 + 3 NA Intergenic Intergenic -26056 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 473-108 chr17 56422983 56423295 + 3 NA intron (NM_001370326, intron 8 of 20) intron (NM_001370326, intron 8 of 20) -170560 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 929-24 chr21 28920483 28920848 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -35292 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 431-171 chr3 5446063 5446300 + 3 NA Intergenic L1M4|LINE|L1 -195926 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 497-158 chr20 52703498 52703678 + 3 NA Intergenic MER113A|DNA|hAT-Charlie 82750 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 564-14 chr10 43638042 43638302 + 3 NA intron (NR_038867, intron 1 of 4) Tigger17a|DNA|TcMar-Tigger -5700 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 742-4 chr1 109927791 109928288 + 3 NA intron (NM_000757, intron 8 of 8) intron (NM_000757, intron 8 of 8) 17190 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 424-202 chr4 113215734 113215902 + 3 NA intron (NM_001354275, intron 5 of 43) A-rich|Low_complexity|Low_complexity 63536 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 573-22 chr10 35335121 35335419 + 3 NA intron (NM_181698, intron 3 of 11) intron (NM_181698, intron 3 of 11) -1239 NM_145012 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 362-445 chr8 118542250 118542428 + 3 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -78662 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 324-356 chr3 96655433 96655618 + 3 NA Intergenic LTR8|LTR|ERV1 -159069 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 622-73 chr2 214656311 214656624 + 3 NA Intergenic L1MEg|LINE|L1 146285 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 527-105 chr16 63904590 63904898 + 3 NA Intergenic L1M3e|LINE|L1 1217319 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 421-187 chr3 98011341 98011630 + 3 NA intron (NM_001105580, intron 5 of 9) MLT1D|LTR|ERVL-MaLR 23819 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 304-60 chr10 84516600 84516832 + 3 NA 3' UTR (NM_001284243, exon 8 of 8) 3' UTR (NM_001284243, exon 8 of 8) 91547 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 409-79 chr14 72284385 72284559 + 3 NA intron (NM_001370288, intron 2 of 16) THE1B-int|LTR|ERVL-MaLR -232348 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 590-122 chr4 48952992 48953240 + 3 NA Intergenic AluJb|SINE|Alu -33159 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 488-14 chr1 166256518 166256759 + 3 NA Intergenic L1M2a|LINE|L1 -89883 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 414-259 chr5 15756691 15756849 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -141768 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 291-40 chr10 19981251 19981394 + 3 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 164890 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 501-110 chr2 102203717 102203918 + 3 NA intron (NM_001351448, intron 3 of 8) L1M1|LINE|L1 16503 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 1246 chr1 97278172 97278714 + 3 NA intron (NR_046590, intron 2 of 4) intron (NR_046590, intron 2 of 4) 182520 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 504-5 chr1 91046198 91046498 + 3 NA Intergenic L2b|LINE|L2 -24093 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 456-139 chr18 73713956 73714200 + 3 NA Intergenic MIR|SINE|MIR 389137 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 590-96 chr21 27691106 27691502 + 3 NA Intergenic Intergenic -31075 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 739-54 chr4 84400044 84400478 + 3 NA Intergenic Intergenic 97973 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 715-37 chr2 67932381 67932907 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -107082 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 522-80 chr14 58177200 58177459 + 3 NA Intergenic Intergenic -22820 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 607-127 chr6 115815089 115815376 + 3 NA Intergenic Intergenic -171397 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 394-222 chr3 110793621 110793780 + 3 NA Intergenic L2a|LINE|L2 276259 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 466-209 chr5 122245351 122245578 + 3 NA Intergenic Intergenic -66227 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 557-83 chr2 10230594 10230785 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -38018 NR_036222 100422929 NR_036222 ENSG00000265418 MIR4261 - microRNA 4261 ncRNA 520-22 chr1 215297629 215297828 + 3 NA Intergenic Intergenic 214991 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 348-121 chr13 60912997 60913185 + 3 NA Intergenic Intergenic 240136 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 802-40 chr3 28395105 28395533 + 3 NA intron (NM_001040432, intron 2 of 9) L1MA9|LINE|L1 46170 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 648-15 chr10 76492787 76493180 + 3 NA intron (NM_001305581, intron 6 of 6) L1M1|LINE|L1 -395061 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 461-135 chr2 97781183 97781457 + 3 NA intron (NM_015348, intron 31 of 40) intron (NM_015348, intron 31 of 40) 46914 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 508-78 chr17 58903147 58903461 + 3 NA intron (NM_014906, intron 1 of 6) MamGypLTR1b|LTR|Gypsy 147435 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 406-114 chr18 2198483 2198672 + 3 NA Intergenic Intergenic 372928 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 668-18 chr12 44758546 44758941 + 3 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 116918 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 477-172 chr2 204194733 204194933 + 3 NA Intergenic MamRep564|Unknown|Unknown 258085 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 359-416 chr6 5013097 5013246 + 3 NA intron (NR_126015, intron 1 of 3) AluJb|SINE|Alu -9108 NM_001286133 10799 Hs.511756 NM_006638 ENSG00000124787 RPP40 RNASEP1|bA428J1.3 ribonuclease P/MRP subunit p40 protein-coding 950-9 chr13 108077542 108078219 + 3 NA Intergenic Intergenic 136902 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 560-61 chr16 50725622 50725957 + 3 NA intron (NR_163434, intron 11 of 12) LTR16C|LTR|ERVL -16261 NM_015247 1540 Hs.578973 NM_015247 ENSG00000083799 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 CYLD lysine 63 deubiquitinase protein-coding 345-165 chr14 88511566 88511782 + 3 NA intron (NM_007039, intron 3 of 18) intron (NM_007039, intron 3 of 18) 43333 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 401-308 chr8 16681807 16682007 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 320438 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 507-136 chr2 133070601 133070777 + 3 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 155132 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 447-176 chr3 112169373 112169576 + 3 NA intron (NM_001320531, intron 22 of 27).2 intron (NM_001320531, intron 22 of 27).2 36051 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 295-96 chr12 29820720 29820904 + 3 NA Intergenic MIRb|SINE|MIR -36053 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 457-229 chr7 37376853 37377093 + 3 NA intron (NM_001206480, intron 1 of 21) MER47B|DNA|TcMar-Tigger -23305 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 520-326 chr9 85381291 85381562 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 360603 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 561-97 chr2 66659296 66659591 + 3 NA intron (NR_110156, intron 1 of 5) L1PA13|LINE|L1 43784 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 423-302 chr8 131621837 131622026 + 3 NA Intergenic AluSg4|SINE|Alu -282162 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 543-220 chr6 73990711 73991007 + 3 NA Intergenic LTR12C|LTR|ERV1 -78592 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 573-141 chr5 24708337 24708607 + 3 NA Intergenic Intergenic -63494 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 432-266 chr7 26555738 26555966 + 3 NA Intergenic Intergenic -17027 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 599-100 chr4 105703938 105704152 + 3 NA intron (NM_020395, intron 1 of 7) L2b|LINE|L2 4644 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 604-61 chr16 77604854 77605129 + 3 NA Intergenic LTR16A|LTR|ERVL -117501 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 807-3 chr1 86764741 86765264 + 3 NA Intergenic Intergenic 60426 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 522-14 chr1 226169684 226169970 + 3 NA intron (NM_022735, intron 1 of 7) AluSx|SINE|Alu 16914 NM_022735 64746 Hs.520207 NM_022735 ENSG00000182827 ACBD3 GCP60|GOCAP1|GOLPH1|PAP7 acyl-CoA binding domain containing 3 protein-coding 315-356 chr4 159699494 159699679 + 3 NA intron (NR_146278, intron 2 of 2) L1M3b|LINE|L1 78198 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 373-295 chr4 112417058 112417321 + 3 NA intron (NM_001102406, intron 5 of 15) L1MEi|LINE|L1 -98190 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 479-89 chr19 13337184 13337387 + 3 NA intron (NM_023035, intron 6 of 46) MLT1C|LTR|ERVL-MaLR 169175 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 459-158 chr20 12719186 12719487 + 3 NA Intergenic Intergenic 217627 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 652-126 chr9 26968650 26969032 + 3 NA intron (NM_001099224, intron 2 of 13) L1PB4|LINE|L1 12429 NM_001349928 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 811-31 chr22 25646141 25646623 + 3 NA intron (NM_005160, intron 3 of 20) L1MEg2|LINE|L1 81707 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 545-230 chr8 20496866 20497210 + 3 NA Intergenic Intergenic 117888 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 544-141 chr3 2176204 2176492 + 3 NA intron (NM_175607, intron 2 of 24) MER113A|DNA|hAT-Charlie -32107 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 950-25 chr5 64307768 64308139 + 3 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 142110 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 396-242 chr3 191991923 191992076 + 3 NA Intergenic L1PBa1|LINE|L1 -246631 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 369-357 chr6 62625328 62625486 + 3 NA Intergenic Intergenic -339180 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 544-142 chr3 18233454 18233750 + 3 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 191737 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 320-515 chr7 54486573 54486724 + 3 NA Intergenic L1MC|LINE|L1 -55677 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 434-305 chr8 138078601 138078872 + 3 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 4809 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 455-270 chr8 57781416 57781590 + 3 NA Intergenic Intergenic 35354 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 584-178 chr9 72517251 72517536 + 3 NA Intergenic Intergenic -4408 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 368-326 chr4 44253655 44253839 + 3 NA intron (NM_198353, intron 1 of 1) MLT1H|LTR|ERVL-MaLR 195062 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 588-76 chr2 174104789 174105177 + 3 NA intron (NM_001011708, intron 6 of 9) intron (NM_001011708, intron 6 of 9) 79703 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 586-133 chr6 95471108 95471465 + 3 NA Intergenic Intergenic 106165 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 557-93 chr2 51952324 51952646 + 3 NA intron (NR_135237, intron 7 of 10) THE1B-int|LTR|ERVL-MaLR -418163 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 652-28 chr11 121574703 121575013 + 3 NA intron (NM_003105, intron 24 of 47) intron (NM_003105, intron 24 of 47) 122544 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 537-196 chr5 61484941 61485175 + 3 NA intron (NM_020928, intron 2 of 13) intron (NM_020928, intron 2 of 13) -152702 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 639-59 chr2 56597925 56598335 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -412360 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 602-146 chrX 151555118 151555491 + 3 NA Intergenic LTR12C|LTR|ERV1 -8371 NM_173493 139135 Hs.160594 NM_173493 ENSG00000166049 PASD1 CT63|CT64|OXTES1 PAS domain containing repressor 1 protein-coding 749-9 chr1 221061197 221061531 + 3 NA Intergenic Intergenic -181224 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 446-102 chr14 72537875 72538141 + 3 NA intron (NM_001204422, intron 15 of 15) intron (NM_001204422, intron 15 of 15) 21188 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 363-34 chr1 239925599 239925832 + 3 NA Intergenic LOR1-int|LTR|ERV1 -25843 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 975-14 chr5 83512769 83513214 + 3 NA intron (NM_001126336, intron 6 of 12) intron (NM_001126336, intron 6 of 12) 41247 NM_004385 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 398-48 chr10 110806852 110807112 + 3 NA intron (NM_001134363, intron 7 of 13) intron (NM_001134363, intron 7 of 13) 63922 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 550-117 chr2 102583329 102583711 + 3 NA Intergenic Intergenic -36033 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 355-463 chr7 53205850 53206020 + 3 NA Intergenic Intergenic 170302 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 351-13 chr1 110146224 110146357 + 3 NA Intergenic Intergenic -4204 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 496-215 chr5 67703179 67703502 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -56551 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 824-28 chr21 30297218 30297650 + 3 NA Intergenic Intergenic -7920 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 277-16 chr1 101872868 101872966 + 3 NA intron (NR_033424, intron 1 of 1) intron (NR_033424, intron 1 of 1) 905 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 345-58 chr10 43945845 43946088 + 3 NA intron (NR_033846, intron 4 of 7) intron (NR_033846, intron 4 of 7) 33564 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 370-367 chr5 27248346 27248547 + 3 NA Intergenic Intergenic -209860 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 370-60 chr10 90097504 90097703 + 3 NA Intergenic L2c|LINE|L2 -140230 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 648-12 chr10 30217375 30217645 + 3 NA intron (NR_120653, intron 2 of 2) AluSz6|SINE|Alu 5658 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 472-172 chr2 181348109 181348293 + 3 NA intron (NR_130784, intron 3 of 4) L1MC1|LINE|L1 -42549 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 767 chr1 65583393 65583810 + 3 NA intron (NM_001003679, intron 5 of 19) L1MEc|LINE|L1 57912 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 1420-3 chr2 118520118 118521014 + 3 NA Intergenic Intergenic 82400 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 555-33 chr11 60968907 60969157 + 3 NA Intergenic AluSz6|SINE|Alu -2648 NM_006725 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 552-174 chr5 98264155 98264404 + 3 NA Intergenic Intergenic -103040 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 651-48 chr16 60948455 60948867 + 3 NA Intergenic Intergenic 107105 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 388-195 chr21 20695350 20695521 + 3 NA Intergenic L1ME1|LINE|L1 107673 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 481-134 chr2 33180753 33181020 + 3 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 46289 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 1038-16 chr8 49030555 49031233 + 3 NA Intergenic Intergenic -23442 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 434-258 chr7 30249784 30250051 + 3 NA intron (NR_136267, intron 3 of 3) intron (NR_136267, intron 3 of 3) -34680 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 405-44 chr11 39025033 39025199 + 3 NA Intergenic Intergenic 376258 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 297-499 chr8 138404469 138404604 + 3 NA intron (NM_001362965, intron 1 of 19) Tigger1|DNA|TcMar-Tigger 92725 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 484-109 chr19 56434899 56435141 + 3 NA Intergenic Intergenic 30688 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 454-216 chr3 145388640 145388938 + 3 NA Intergenic AluSx|SINE|Alu 680396 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 429-293 chr8 52319479 52319672 + 3 NA intron (NR_148195, intron 2 of 3) L1M5|LINE|L1 -65083 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 372-309 chr3 201543 201683 + 3 NA intron (NR_045572, intron 1 of 2) intron (NR_045572, intron 1 of 2) 3724 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 471-47 chr11 54940801 54941048 + 3 NA Intergenic ALR/Alpha|Satellite|centr 234092 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 922-22 chr3 73701311 73701828 + 3 NA Intergenic Intergenic -76628 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 728-15 chr11 80073940 80074296 + 3 NA Intergenic Intergenic -633088 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 549-90 chr19 12526305 12526586 + 3 NA 3' UTR (NM_144976, exon 4 of 4) 3' UTR (NM_144976, exon 4 of 4) 25037 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 527-141 chr2 146785467 146785777 + 3 NA Intergenic Intergenic 198565 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 286-273 chr3 40368994 40369173 + 3 NA Intergenic L1PA15-16|LINE|L1 -18101 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 400-331 chr7 134817866 134818016 + 3 NA intron (NM_033157, intron 1 of 14) intron (NM_033157, intron 1 of 14) 38307 NM_004342 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 634-72 chr2 47505278 47505543 + 3 NA Intergenic MER77|LTR|ERVL -22127 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 480-10 chr1 78337395 78337656 + 3 NA intron (NR_027310, intron 3 of 5) MIR3|SINE|MIR 107926 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 850-4 chr10 29312628 29313130 + 3 NA Intergenic Intergenic 23809 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 850-47 chr7 55221647 55221987 + 3 NA Intergenic MIRc|SINE|MIR -32868 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 364-280 chr3 97458435 97458610 + 3 NA intron (NM_001080448, intron 7 of 17) intron (NM_001080448, intron 7 of 17) 18915 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 693-63 chr20 40769467 40769884 + 3 NA Intergenic Intergenic -55052 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 426-209 chr4 85631310 85631618 + 3 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -91004 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 844-58 chr6 83562328 83562895 + 3 NA intron (NM_001242792, intron 25 of 28) MER54A|LTR|ERVL 50077 NM_001170423 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 543-72 chr14 24748877 24749167 + 3 NA Intergenic Intergenic -114832 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 326-79 chr10 82544894 82545084 + 3 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -312069 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 375-185 chr18 70484364 70484551 + 3 NA Intergenic L1PREC2|LINE|L1 -99866 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 592-21 chr11 5993206 5993572 + 3 NA Intergenic L2|LINE|L2 -6404 NM_001005173 338751 Hs.553703 NM_001005173 ENSG00000183313 OR52L1 OR11-50 olfactory receptor family 52 subfamily L member 1 protein-coding 270-18 chr1 194681845 194681993 + 3 NA Intergenic Intergenic 1377174 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 507-34 chr10 78505738 78506046 + 3 NA Intergenic L1ME1|LINE|L1 238550 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 482-168 chr3 104919080 104919293 + 3 NA Intergenic MIR|SINE|MIR -447527 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 576-36 chr12 119132160 119132405 + 3 NA intron (NM_194286, intron 8 of 12) MIRc|SINE|MIR 44202 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 305-151 chr14 61661957 61662150 + 3 NA Intergenic Intergenic -33460 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 483-270 chr8 110535949 110536121 + 3 NA Intergenic Intergenic 491398 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 491-61 chr13 81762157 81762534 + 3 NA Intergenic LTR87|LTR|ERVL? -535362 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 434-151 chr2 115180067 115180246 + 3 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 18001 NM_001004360 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 533-159 chr4 71636916 71637190 + 3 NA Intergenic MER4-int|LTR|ERV1 147026 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 707-80 chr5 43994663 43995168 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -391685 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 404-178 chr2 187801676 187801841 + 3 NA Intergenic Intergenic -247253 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 372-133 chr13 85953102 85953376 + 3 NA Intergenic Intergenic -153820 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 404-31 chr10 33479026 33479226 + 3 NA Intergenic Intergenic -144221 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 476-152 chr2 179781610 179781838 + 3 NA intron (NR_148056, intron 1 of 9) L1PA14|LINE|L1 -35214 NM_001352815 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 679-83 chr4 155266234 155266686 + 3 NA Intergenic Intergenic 57824 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 295-30 chr1 220320759 220320962 + 3 NA Intergenic Intergenic -48407 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 494-116 chr19 44477747 44478085 + 3 NA exon (NM_001278509, exon 5 of 5) exon (NM_001278509, exon 5 of 5) 22606 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 426-29 chr10 66656991 66657289 + 3 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -268896 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 438-97 chr18 10227845 10228041 + 3 NA Intergenic AluSx|SINE|Alu 186427 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 695-16 chr10 74919625 74920060 + 3 NA intron (NR_134476, intron 1 of 1) L1MEd|LINE|L1 7056 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 449-41 chr11 30640383 30640552 + 3 NA Intergenic MER41A|LTR|ERV1 -54114 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 646-141 chrX 96526427 96526785 + 3 NA Intergenic LTR40c|LTR|ERVL -158057 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 464-17 chr10 39097346 39097521 + 3 NA Intergenic ALR/Alpha|Satellite|centr 400837 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 319-232 chr2 18240672 18240870 + 3 NA Intergenic MIRb|SINE|MIR 319882 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 650-57 chr2 104658990 104659278 + 3 NA Intergenic CpG 98585 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 442-237 chr5 117264861 117265066 + 3 NA Intergenic L1MEg|LINE|L1 -150549 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 193-89 chr19 30324548 30324619 + 3 NA Intergenic AluJb|SINE|Alu -47801 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 513-5 chr1 73117946 73118315 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -188040 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 464-142 chr20 12366168 12366411 + 3 NA Intergenic L1MD|LINE|L1 448396 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 558-94 chr2 34187586 34187831 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 120482 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 383-140 chr16 23744573 23744776 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -10352 NM_022097 63928 Hs.178589 NM_022097 ENSG00000166869 CHP2 - calcineurin like EF-hand protein 2 protein-coding 596-40 chr11 107104950 107105288 + 3 NA Intergenic L1PB3|LINE|L1 -86643 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 387-84 chr12 60744691 60744841 + 3 NA Intergenic Intergenic 1055396 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 993 chr1 38947408 38947907 + 3 NA Intergenic LTR8A|LTR|ERV1 -5827 NM_017821 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 267-126 chr15 61406242 61406380 + 3 NA Intergenic L1ME3Cz|LINE|L1 -177009 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 355-199 chr17 70107162 70107337 + 3 NA intron (NM_001291623, intron 1 of 2) intron (NM_001291623, intron 1 of 2) 2404 NM_001291625 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 693-102 chr8 75832049 75832313 + 3 NA Intergenic L1MC5|LINE|L1 292213 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 401-136 chr18 40315136 40315333 + 3 NA Intergenic L1ME4c|LINE|L1 248948 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 468-280 chr6 81616524 81616725 + 3 NA Intergenic AluJr|SINE|Alu 136057 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 433-38 chr11 24629200 24629414 + 3 NA intron (NM_001252008, intron 1 of 11) L1PB4|LINE|L1 132254 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 407-156 chr2 162969181 162969403 + 3 NA Intergenic Intergenic -130525 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 356-192 chr17 42417561 42417724 + 3 NA intron (NM_012232, intron 1 of 1) Tigger3c|DNA|TcMar-Tigger 5614 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 CAVIN1 CAVIN|CGL4|FKSG13|PTRF|cavin-1 caveolae associated protein 1 protein-coding 506-181 chr3 72510747 72511052 + 3 NA Intergenic Intergenic -64276 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 798-34 chr21 21770835 21771254 + 3 NA intron (NR_109958, intron 2 of 4) Zaphod3|DNA|hAT-Tip100 24059 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 434-308 chr9 4651641 4651818 + 3 NA intron (NM_001353491, intron 3 of 14) L1MB7|LINE|L1 10494 NM_001353490 55064 Hs.179615 NM_017985 ENSG00000106686 SPATA6L C9orf68|bA6J24.2 spermatogenesis associated 6 like protein-coding 649-20 chr12 118864275 118864636 + 3 NA Intergenic Intergenic -30919 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 392-318 chr8 70804236 70804433 + 3 NA Intergenic Intergenic 134995 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 591-112 chr4 59668914 59669274 + 3 NA Intergenic L2|LINE|L2 655521 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 486-312 chr9 95799394 95799623 + 3 NA Intergenic L1MB8|LINE|L1 -76183 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 412-125 chr17 70959162 70959446 + 3 NA Intergenic MLT2D|LTR|ERVL 242875 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 747-23 chr14 92250139 92250631 + 3 NA Intergenic Intergenic -72196 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 281-87 chr12 41378206 41378403 + 3 NA intron (NM_001164595, intron 3 of 9) L1MA9|LINE|L1 -59435 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 682-36 chr15 61802701 61803177 + 3 NA Intergenic Intergenic 73021 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 506-116 chr19 9381412 9381685 + 3 NA exon (NM_003451, exon 9 of 9) exon (NM_003451, exon 9 of 9) 5232 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 412-85 chr14 42102809 42102991 + 3 NA Intergenic Intergenic 496044 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 458-47 chr12 17009078 17009415 + 3 NA Intergenic Intergenic 20499 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 398-228 chr3 192299599 192299826 + 3 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) 61082 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 496-19 chr1 158112110 158112330 + 3 NA Intergenic L2b|LINE|L2 28420 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 691-71 chr6 20812531 20813016 + 3 NA intron (NM_017774, intron 8 of 15) L1ME1|LINE|L1 278316 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 143-87 chr8 131307401 131307473 + 3 NA Intergenic L1MCa|LINE|L1 -266528 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 389-242 chr3 120366873 120367083 + 3 NA Intergenic Intergenic -17624 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 567-210 chrX 62997693 62998167 + 3 NA Intergenic L1M2|LINE|L1 353402 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 408-80 chr12 41812445 41812707 + 3 NA Intergenic L1PA16|LINE|L1 48387 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 470-189 chr4 30566326 30566571 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -153921 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 549-108 chr2 76737991 76738295 + 3 NA Intergenic Intergenic -247822 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 678-69 chr3 73742499 73742928 + 3 NA Intergenic Intergenic -66531 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 1540-3 chr19 29347427 29348214 + 3 NA intron (NR_040029, intron 9 of 9) L1MB3|LINE|L1 -134669 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 535-119 chr19 56432863 56433164 + 3 NA Intergenic Intergenic 28681 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 600-11 chr10 14798801 14799021 + 3 NA Intergenic L1MB1|LINE|L1 -24014 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 686-72 chr6 92156799 92157154 + 3 NA Intergenic L1MA9|LINE|L1 -466548 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 720-76 chr6 40119630 40120058 + 3 NA Intergenic LTR16B2|LTR|ERVL -185382 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 466-4 chr1 80388064 80388403 + 3 NA Intergenic Intergenic -147522 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 546-222 chr7 55656858 55657280 + 3 NA Intergenic Intergenic 30963 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 1073-15 chr6 169946121 169946718 + 3 NA Intergenic L1ME1|LINE|L1 -16204 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 432-307 chrX 101987917 101988192 + 3 NA Intergenic Intergenic -56027 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 852-49 chr8 122632413 122632827 + 3 NA Intergenic Intergenic 61486 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 634-163 chrX 136043454 136043749 + 3 NA intron (NM_006359, intron 15 of 15) intron (NM_006359, intron 15 of 15) 58166 NM_001330652 10479 Hs.62185 NM_006359 ENSG00000198689 SLC9A6 MRSA|NHE6 solute carrier family 9 member A6 protein-coding 692-60 chr21 31469867 31470225 + 3 NA intron (NM_003253, intron 1 of 28) AluSx|SINE|Alu 89041 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 502-178 chr3 73226955 73227159 + 3 NA Intergenic L1PA16|LINE|L1 165398 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 738-6 chr10 58490985 58491233 + 3 NA Intergenic L1MB1|LINE|L1 -21763 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 373-38 chr1 239389888 239390078 + 3 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 3415 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 1115-3 chr11 50563823 50564516 + 3 NA Intergenic ALR/Alpha|Satellite|centr 155022 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 507-58 chr11 93356324 93356666 + 3 NA intron (NM_181645, intron 3 of 13) intron (NM_181645, intron 3 of 13) 25778 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 352-58 chr10 105079282 105079579 + 3 NA intron (NM_014978, intron 5 of 26) intron (NM_014978, intron 5 of 26) -413214 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 472-152 chr2 72275446 72275707 + 3 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -127714 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 987-12 chr5 11818079 11818729 + 3 NA intron (NM_001288717, intron 1 of 20) AluSz|SINE|Alu 86042 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 673-69 chr20 57869132 57869539 + 3 NA Intergenic Intergenic -134569 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 402-229 chr4 30563249 30563385 + 3 NA Intergenic L1MA6|LINE|L1 -157052 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 510-283 chr8 129405091 129405286 + 3 NA intron (NR_130920, intron 1 of 3) L1ME3Cz|LINE|L1 78954 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 643-122 chr8 31678342 31678723 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 38780 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 808-47 chr5 166133697 166134158 + 3 NA Intergenic HERVFH21-int|LTR|ERV1 792443 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 465-294 chr8 112988308 112988567 + 3 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 344944 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 270-234 chr3 73177092 73177271 + 3 NA Intergenic MLT2D|LTR|ERVL 115522 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 516-83 chr15 60060885 60061130 + 3 NA Intergenic Intergenic 56696 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 390-430 chrX 11393151 11393319 + 3 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) 34583 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 679-61 chr20 13861496 13861877 + 3 NA intron (NR_073206, intron 18 of 20) L2a|LINE|L2 76658 NR_147978 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 463-54 chr11 39252644 39252801 + 3 NA Intergenic L1ME3C|LINE|L1 603864 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 340-478 chr6 62915014 62915242 + 3 NA Intergenic L1MD|LINE|L1 404849 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 884-43 chr6 134607233 134607708 + 3 NA Intergenic Intergenic -67465 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 214-149 chr2 9789157 9789296 + 3 NA Intergenic Intergenic -54216 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 465-91 chr15 90907686 90907934 + 3 NA intron (NR_135502, intron 8 of 22) intron (NR_135502, intron 8 of 22) 3620 NR_135504 4122 Hs.116459 NM_006122 ENSG00000196547 MAN2A2 MANA2X mannosidase alpha class 2A member 2 protein-coding 210-25 chr10 33606595 33606693 + 3 NA Intergenic Intergenic 166036 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 745-39 chr3 180007450 180007932 + 3 NA intron (NM_016559, intron 1 of 14) THE1A-int|LTR|ERVL-MaLR 29246 NM_001349401 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 826-64 chr8 120841755 120842141 + 3 NA Intergenic Intergenic -29902 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 540-119 chr2 124686814 124687093 + 3 NA intron (NM_130773, intron 13 of 23) MER3|DNA|hAT-Charlie 661666 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 788-41 chr4 166762990 166763466 + 3 NA intron (NM_001204356, intron 6 of 9) L1MEc|LINE|L1 471198 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 623-26 chr11 115592877 115593236 + 3 NA Intergenic Intergenic -88641 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 1343 chr10 16977765 16978518 + 3 NA intron (NM_001081, intron 31 of 66) intron (NM_001081, intron 31 of 66) 151676 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 750-17 chr13 91954378 91954846 + 3 NA intron (NM_004466, intron 6 of 7) L1ME3|LINE|L1 397595 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 592-152 chr6 47187251 47187487 + 3 NA Intergenic L2b|LINE|L2 122536 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 366-42 chr10 27908879 27909044 + 3 NA intron (NM_001290021, intron 9 of 13) intron (NM_001290021, intron 9 of 13) 72910 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 445-252 chr7 52128030 52128203 + 3 NA Intergenic Intergenic -734860 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 537-12 chr1 157603888 157604208 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie -5963 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 448-26 chr10 10964691 10964887 + 3 NA intron (NM_001326319, intron 4 of 16) intron (NM_001326319, intron 4 of 16) -12626 NR_024411 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 566-193 chr8 85892504 85892907 + 3 NA Intergenic L1M4|LINE|L1 -64763 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 583-120 chr4 28848597 28848862 + 3 NA Intergenic L1M2a|LINE|L1 29147 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 968-32 chr9 38264375 38264962 + 3 NA Intergenic L1MA4|LINE|L1 -128034 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 469-48 chr11 37652540 37652759 + 3 NA Intergenic L1MA8|LINE|L1 -285952 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 746-91 chrX 77747506 77747803 + 3 NA intron (NM_000489, intron 1 of 34) L2c|LINE|L2 38562 NM_138270 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 605 chr1 49847367 49847630 + 3 NA intron (NM_001323575, intron 2 of 12) L1PB4|LINE|L1 176456 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 838-45 chr9 89032462 89032859 + 3 NA intron (NM_016848, intron 11 of 11) intron (NM_016848, intron 11 of 11) 41192 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 484-207 chr5 30542503 30542713 + 3 NA Intergenic L1MA3|LINE|L1 -651078 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 380-331 chr6 28195075 28195260 + 3 NA Intergenic L1MD1|LINE|L1 23762 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 245-325 chr7 39114807 39114993 + 3 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -101333 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 492-121 chr2 11538185 11538397 + 3 NA intron (NM_014668, intron 1 of 32) intron (NM_014668, intron 1 of 32) -1528 NM_148903 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 618-105 chr6 11844718 11845082 + 3 NA Intergenic Intergenic -65853 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 493-20 chr1 221798906 221799214 + 3 NA Intergenic Intergenic 41606 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 545-125 chr2 180316954 180317218 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -309789 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 798 chr1 65192649 65193111 + 3 NA intron (NM_001005353, intron 3 of 5) MSTD-int|LTR|ERVL-MaLR 43886 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 478-301 chr8 133105510 133105680 + 3 NA intron (NM_003235, intron 43 of 47) L2|LINE|L2 -2993 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 546-111 chr2 114944034 114944461 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -110699 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 479-276 chr9 87234760 87235022 + 3 NA Intergenic Intergenic 86247 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 600-51 chr18 50769861 50770066 + 3 NA Intergenic MLT2A2|LTR|ERVL 50053 NM_031939 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 231-64 chr12 9145303 9145450 + 3 NA Intergenic L1MB1|LINE|L1 -29147 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 686-85 chr8 129391610 129392022 + 3 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 92326 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 339-42 chr1 218243155 218243413 + 3 NA Intergenic Intergenic -42009 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 599-31 chr12 88497310 88497577 + 3 NA intron (NM_000899, intron 9 of 9) L2a|LINE|L2 83028 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 659-71 chr3 84300988 84301477 + 3 NA Intergenic Intergenic 568343 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 471-50 chr11 80475640 80475853 + 3 NA Intergenic Intergenic 287057 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 803-8 chr11 55023144 55023542 + 3 NA Intergenic ALR/Alpha|Satellite|centr -238812 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 536-89 chr16 62490284 62490545 + 3 NA Intergenic MLT2B3|LTR|ERVL -453976 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 1212-6 chr2 129739458 129740015 + 3 NA Intergenic Intergenic 137755 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 420-204 chr4 81356781 81356945 + 3 NA Intergenic L1PA17|LINE|L1 115044 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 491-211 chr5 74998527 74998771 + 3 NA Intergenic L1MC1|LINE|L1 53909 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 536-62 chr12 96142080 96142286 + 3 NA Intergenic L2a|LINE|L2 -52192 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 445-275 chr8 103274547 103274824 + 3 NA intron (NR_148215, intron 2 of 3) L1M4a2|LINE|L1 -23809 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 530-172 chr3 152876275 152876552 + 3 NA Intergenic AluSz|SINE|Alu 41282 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 337-149 chr14 46109419 46109588 + 3 NA intron (NR_102702, intron 1 of 3) L1MA3|LINE|L1 45344 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 380-72 chr11 91048428 91048649 + 3 NA Intergenic MER50B|LTR|ERV1 -179336 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 505-83 chr14 55945094 55945369 + 3 NA Intergenic Intergenic -148557 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 321-386 chr3 132991224 132991377 + 3 NA Intergenic MIRc|SINE|MIR -46988 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 423-13 chr1 104430082 104430269 + 3 NA Intergenic L1MC1|LINE|L1 357152 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 702-82 chr5 100923686 100924073 + 3 NA Intergenic L1PBa|LINE|L1 -20597 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 631-61 chr2 29648680 29649050 + 3 NA intron (NM_004304, intron 3 of 28) HAL1|LINE|L1 -173488 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 272-311 chr4 80106404 80106556 + 3 NA Intergenic Intergenic -33008 NM_001286780 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 435-52 chr11 109611638 109611857 + 3 NA Intergenic MER45A|DNA|hAT-Tip100 189557 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 533-68 chr15 94563015 94563222 + 3 NA Intergenic L1M7|LINE|L1 207188 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 737-9 chr11 13545988 13546371 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -50004 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 423-245 chr6 121032243 121032534 + 3 NA Intergenic Intergenic 302092 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 330-16 chr1 60480000 60480151 + 3 NA Intergenic L1MEc|LINE|L1 142610 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 719-49 chr3 73968900 73969276 + 3 NA Intergenic Intergenic 159844 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 550-215 chr7 54185645 54185991 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -144879 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 525-7 chr1 88310621 88310857 + 3 NA Intergenic L2a|LINE|L2 -373405 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 506-225 chr5 42242802 42243077 + 3 NA Intergenic Intergenic -67594 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 468-202 chr3 88240743 88241031 + 3 NA Intergenic Intergenic 90928 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 516-189 chr4 58242071 58242254 + 3 NA Intergenic Intergenic 294166 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 450-86 chr14 71774850 71775087 + 3 NA Intergenic MER4A1|LTR|ERV1 -157203 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 658-127 chr8 132332491 132332812 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 114611 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 505-66 chr12 118570681 118570961 + 3 NA Intergenic Intergenic 190858 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 571-82 chr2 143436721 143437007 + 3 NA intron (NM_018460, intron 7 of 13) intron (NM_018460, intron 7 of 13) 307445 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 570-120 chr2 236223715 236223978 + 3 NA intron (NM_212556, intron 3 of 5) L1ME2|LINE|L1 40499 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 492-2 chr1 49014161 49014359 + 3 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -237291 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 672-49 chr19 46326658 46327031 + 3 NA intron (NM_152796, intron 10 of 11) MLT1F1-int|LTR|ERVL-MaLR -20243 NM_001204284 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 389-324 chr6 116851430 116851654 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -22485 NM_001286355 222545 Hs.266745 NM_148963 ENSG00000173612 GPRC6A GPCR|bA86F4.3 G protein-coupled receptor class C group 6 member A protein-coding 625-102 chr7 41903733 41904047 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -200800 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 471-93 chr15 80232340 80232544 + 3 NA intron (NM_001352888, intron 1 of 2) intron (NM_001352888, intron 1 of 2) 19771 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 356-154 chr14 78475261 78475444 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 71633 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 318-548 chr8 106130297 106130482 + 3 NA Intergenic Intergenic -69886 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 368-348 chr4 188927022 188927294 + 3 NA Intergenic LTR62|LTR|ERVL 150501 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 661-22 chr14 20164474 20164820 + 3 NA Intergenic L1M2|LINE|L1 20911 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 746-51 chr3 115527252 115527749 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -96010 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 749-61 chr20 20804366 20804691 + 3 NA Intergenic Intergenic -91884 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 614-13 chr10 88841850 88842300 + 3 NA intron (NM_144590, intron 1 of 5) intron (NM_144590, intron 1 of 5) 9769 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 358-307 chr3 121651095 121651276 + 3 NA intron (NM_001292041, intron 3 of 12) L1ME2|LINE|L1 9718 NM_001292041 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 460-283 chr8 48326614 48326812 + 3 NA Intergenic Intergenic -224854 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 555-96 chr2 81785927 81786123 + 3 NA Intergenic MER90|LTR|ERV1 -319079 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 502-90 chr14 72272220 72272435 + 3 NA intron (NM_001370288, intron 2 of 16) MIR3|SINE|MIR -244493 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 298-361 chr5 41061002 41061164 + 3 NA intron (NM_173489, intron 6 of 41) intron (NM_173489, intron 6 of 41) 10259 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 364-116 chr13 41563551 41563722 + 3 NA Intergenic Intergenic 4759 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 371-318 chr5 97462370 97462515 + 3 NA Intergenic Intergenic -42254 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 536-111 chr2 36034861 36035064 + 3 NA Intergenic Intergenic 320608 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 679-52 chr2 51847977 51848312 + 3 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -522504 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 560-140 chr5 121449052 121449305 + 3 NA Intergenic L1MA2|LINE|L1 126628 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 397-193 chr21 35238182 35238385 + 3 NA Intergenic Intergenic -188985 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 222-29 chr10 18154941 18155051 + 3 NA intron (NM_201593, intron 2 of 13) MLT1B|LTR|ERVL-MaLR 14572 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 455-262 chr7 124140206 124140442 + 3 NA Intergenic L1MA1|LINE|L1 -107257 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 744-29 chr2 30865701 30866051 + 3 NA Intergenic Intergenic -58430 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 490-249 chr6 132174596 132174764 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 40702 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 422-207 chr4 32936053 32936251 + 3 NA Intergenic Intergenic 585114 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 275-103 chr14 37791840 37792036 + 3 NA intron (NM_001310135, intron 18 of 32) intron (NM_001310135, intron 18 of 32) 19555 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 429-46 chr10 123451157 123451340 + 3 NA Intergenic Intergenic -215107 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 375-106 chr12 118869552 118869765 + 3 NA Intergenic MER21B|LTR|ERVL -36122 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 409-186 chr22 26283488 26283687 + 3 NA intron (NM_001184776, intron 1 of 14) L1ME3C|LINE|L1 114113 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 580-69 chr18 78665954 78666163 + 3 NA Intergenic Intergenic -314217 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 691-38 chr2 49469759 49470184 + 3 NA Intergenic L1M2|LINE|L1 -315444 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 523-164 chr22 27926482 27926846 + 3 NA intron (NR_026963, intron 1 of 4) L1ME2|LINE|L1 -6052 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 507-80 chr14 43259790 43260027 + 3 NA Intergenic Intergenic 1247375 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 580-84 chr2 122977380 122977754 + 3 NA Intergenic L1MC1|LINE|L1 95914 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 604-126 chr5 17812510 17812860 + 3 NA TTS (NR_134287) TTS (NR_134287) 5411 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 396-218 chr3 59213550 59213697 + 3 NA Intergenic Intergenic -163591 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 427-114 chr2 50550370 50550616 + 3 NA intron (NM_001330093, intron 9 of 22) intron (NM_001330093, intron 9 of 22) 145769 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 726-52 chr3 68710985 68711495 + 3 NA Intergenic L1MB7|LINE|L1 210603 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 830-3 chr1 163491528 163491910 + 3 NA Intergenic Intergenic -68528 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 384-289 chr5 36288763 36289046 + 3 NA intron (NM_001323279, intron 1 of 12) L1ME2|LINE|L1 12998 NM_001323279 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 476-220 chr5 73700712 73700975 + 3 NA intron (NM_001177693, intron 2 of 35) intron (NM_001177693, intron 2 of 35) 74685 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 814-52 chr5 178976989 178977549 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 18051 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 754-38 chr2 33765679 33766028 + 3 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -37636 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 456-282 chr6 114727854 114728172 + 3 NA Intergenic Intergenic -665136 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 246-264 chr3 104074379 104074511 + 3 NA Intergenic Intergenic -550329 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 709-49 chr20 60964358 60964786 + 3 NA Intergenic Intergenic -114492 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 446-36 chr10 35093813 35094049 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie -3317 NM_001198777 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 375-362 chr6 141030521 141030736 + 3 NA Intergenic Intergenic 346814 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 599-35 chr14 37096288 37096601 + 3 NA intron (NM_001171170, intron 1 of 10) L1M1|LINE|L1 -75582 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 516-44 chr12 18898256 18898509 + 3 NA Intergenic Intergenic 160263 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 666-50 chr19 37387647 37388016 + 3 NA intron (NM_032453, intron 4 of 4) L2a|LINE|L2 16732 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 393-191 chr2 235824333 235824569 + 3 NA intron (NM_001037131, intron 9 of 17) intron (NM_001037131, intron 9 of 17) -306530 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 231-159 chr2 49860832 49860999 + 3 NA Intergenic Intergenic 113288 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 501-244 chr7 69040180 69040493 + 3 NA Intergenic Intergenic 557288 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 357-439 chr8 82746744 82746942 + 3 NA Intergenic Intergenic -165261 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 635-18 chr10 106391500 106391932 + 3 NA Intergenic Intergenic 251551 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 548-146 chr3 70077599 70077973 + 3 NA Intergenic Intergenic 78042 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 621-64 chr2 193014200 193014499 + 3 NA Intergenic L1PB4|LINE|L1 264504 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 425-139 chr2 116181114 116181338 + 3 NA Intergenic L1ME1|LINE|L1 837411 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 690-33 chr14 35618527 35619041 + 3 NA intron (NM_014990, intron 34 of 40) intron (NM_014990, intron 34 of 40) 84620 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 559-39 chr13 20336967 20337162 + 3 NA Intergenic HAL1b|LINE|L1 96782 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 237-116 chr15 47260960 47261130 + 3 NA intron (NM_001198999, intron 1 of 19) L1MDa|LINE|L1 76956 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 675-38 chr19 28388606 28389082 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -217844 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 272-437 chr8 29653360 29653487 + 3 NA Intergenic Intergenic 94686 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 510-12 chr1 110865098 110865346 + 3 NA Intergenic L1PA15|LINE|L1 -5977 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 447-230 chr6 71819648 71819895 + 3 NA Intergenic L1PA16|LINE|L1 -66932 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 802-62 chr7 54250947 54251316 + 3 NA Intergenic L1ME4c|LINE|L1 -79566 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 573-136 chr5 7992062 7992329 + 3 NA Intergenic MIRb|SINE|MIR 123047 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 391-48 chr10 111038255 111038448 + 3 NA Intergenic L1MC4|LINE|L1 -38678 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 528-198 chr5 26160214 26160513 + 3 NA Intergenic L1MC3|LINE|L1 878223 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 414-324 chr8 63293726 63293901 + 3 NA Intergenic Intergenic 124810 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 425-96 chr15 56986726 56986931 + 3 NA intron (NM_207038, intron 3 of 19) intron (NM_207038, intron 3 of 19) 67383 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 436-298 chr8 58241811 58242094 + 3 NA Intergenic L1MC3|LINE|L1 30149 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 453-220 chr5 176686935 176687251 + 3 NA Intergenic L1MEf|LINE|L1 39609 NM_001366491 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 838-19 chr2 52328714 52329153 + 3 NA intron (NR_135237, intron 8 of 10) L1MA6|LINE|L1 -41715 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 341-270 chr2 157530427 157530687 + 3 NA 3' UTR (NM_001111033, exon 7 of 7) 3' UTR (NM_001111033, exon 7 of 7) 67003 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 896-37 chr8 87721163 87721783 + 3 NA Intergenic L1P3|LINE|L1 152542 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 458-116 chr19 56441648 56441975 + 3 NA exon (NM_001321356, exon 7 of 7) exon (NM_001321356, exon 7 of 7) 35534 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 534-133 chr2 170251440 170251638 + 3 NA intron (NM_001083615, intron 7 of 33) MLT1B|LTR|ERVL-MaLR 73392 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 390-244 chr3 86346678 86346871 + 3 NA Intergenic Intergenic -135169 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 495-109 chr2 72463406 72463690 + 3 NA intron (NM_001321729, intron 18 of 22) L1MEg1|LINE|L1 -315686 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 500-160 chr2 215529455 215529697 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger 75869 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 485-217 chr5 18036142 18036342 + 3 NA Intergenic Intergenic 228968 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 293-116 chr14 60214781 60214977 + 3 NA Intergenic Intergenic -30871 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 321-572 chr8 120072108 120072319 + 3 NA Intergenic L1ME2z|LINE|L1 -52889 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 446-230 chr5 15345417 15345641 + 3 NA Intergenic Intergenic -78969 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 373-236 chr20 31188681 31188921 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -68863 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 760-62 chr5 127797347 127797659 + 3 NA intron (NM_001317938, intron 4 of 6) intron (NM_001317938, intron 4 of 6) 94114 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 390-17 chr1 172081603 172081780 + 3 NA intron (NM_001278252, intron 11 of 14) intron (NM_001278252, intron 11 of 14) -57117 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 517-287 chr9 36861088 36861414 + 3 NA intron (NM_001280549, intron 6 of 7) L2a|LINE|L2 3057 NR_039766 100616278 NR_039766 ENSG00000264922 MIR4540 - microRNA 4540 ncRNA 1468-3 chr22 48385152 48385800 + 3 NA Intergenic L1PA16|LINE|L1 -104077 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 705-67 chr3 61645275 61645661 + 3 NA intron (NM_002841, intron 1 of 29) MLT1N2|LTR|ERVL-MaLR 83897 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 681-23 chr16 24171593 24171907 + 3 NA intron (NM_002738, intron 10 of 16) AluSx1|SINE|Alu -31366 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 426-241 chr5 95377102 95377340 + 3 NA Intergenic L1ME4a|LINE|L1 -14145 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 562-25 chr10 89832965 89833262 + 3 NA intron (NR_038382, intron 2 of 3) MER34B|LTR|ERV1 3620 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 545-29 chr10 88395538 88395783 + 3 NA intron (NM_018363, intron 4 of 6) L1MB7|LINE|L1 187658 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 215-27 chr10 24420610 24420694 + 3 NA intron (NM_019590, intron 3 of 20) L1ME3G|LINE|L1 -28762 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 500-322 chr9 112639853 112640101 + 3 NA intron (NM_001287036, intron 3 of 4) L1ME3A|LINE|L1 78140 NR_138055 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 507-180 chr4 31915206 31915469 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -82042 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 280-97 chr12 88915538 88915732 + 3 NA Intergenic L1MA4A|LINE|L1 104057 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 314-8 chr1 38687448 38687629 + 3 NA Intergenic L2|LINE|L2 172234 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 1103 chr1 18191400 18191830 + 3 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 83817 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 454-266 chr5 176570041 176570221 + 3 NA intron (NM_017675, intron 5 of 31) intron (NM_017675, intron 5 of 31) 20789 NM_017675 54825 Hs.4205 NM_017675 ENSG00000074276 CDHR2 PCDH24|PCLKC cadherin related family member 2 protein-coding 275-123 chr15 98259101 98259291 + 3 NA Intergenic Intergenic 72362 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 367-111 chr13 60253253 60253454 + 3 NA intron (NR_047022, intron 1 of 2) intron (NR_047022, intron 1 of 2) 14751 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 632-70 chr22 34279222 34279678 + 3 NA Intergenic MLT2B2|LTR|ERVL -356562 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 445-198 chr4 62017746 62018014 + 3 NA intron (NM_001371343, intron 20 of 23) AluSg7|SINE|Alu 143885 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 576-63 chr17 51956482 51956773 + 3 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 202087 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 606-128 chr5 18247121 18247402 + 3 NA Intergenic LTR47B2|LTR|ERVL 439987 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 451-202 chr6 145175481 145175723 + 3 NA Intergenic L1MA2|LINE|L1 511275 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 435-77 chr14 49104092 49104337 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 482166 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 526-251 chr8 122899131 122899422 + 3 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 117621 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 523-157 chr20 50620336 50620714 + 3 NA intron (NM_001290268, intron 2 of 21) AluSx|SINE|Alu -5740 NR_031634 100302146 NR_031634 ENSG00000221091 MIR1302-5 MIRN1302-5|hsa-mir-1302-5 microRNA 1302-5 ncRNA 342-43 chr1 208712642 208712773 + 3 NA Intergenic L1MB8|LINE|L1 -15981 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 395-344 chr8 126792204 126792424 + 3 NA Intergenic Intergenic -220840 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 796-49 chr7 4494983 4495484 + 3 NA Intergenic L1MC5a|LINE|L1 -187062 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 428-295 chr8 76421675 76421972 + 3 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 15169 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 525-77 chr15 39759410 39759640 + 3 NA intron (NM_152597, intron 5 of 11) intron (NM_152597, intron 5 of 11) 23316 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 776-26 chr2 119620992 119621275 + 3 NA intron (NR_073132, intron 15 of 24) AluSp|SINE|Alu -58034 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 148-8 chr10 9100446 9100504 + 3 NA Intergenic Intergenic -175138 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 482-257 chr7 104482257 104482444 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 153694 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 487-156 chr2 193808125 193808339 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -536037 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 543-228 chr7 45517107 45517456 + 3 NA Intergenic L1MEf|LINE|L1 -56859 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 481-246 chr5 39360621 39360803 + 3 NA intron (NM_001737, intron 1 of 10) L1ME4b|LINE|L1 3783 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 324-513 chr7 143140677 143140828 + 3 NA intron (NM_001130026, intron 9 of 10) LTR1B0|LTR|ERV1 8675 NM_002652 5304 Hs.99949 NM_002652 ENSG00000159763 PIP GCDFP-15|GCDFP15|GPIP4 prolactin induced protein protein-coding 545-133 chr21 29755044 29755300 + 3 NA intron (NR_027021, intron 2 of 4) intron (NR_027021, intron 2 of 4) 6997 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 438-193 chr4 54661845 54662107 + 3 NA intron (NM_000222, intron 1 of 20) Charlie8|DNA|hAT-Charlie 4048 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 261-215 chr20 44876627 44876724 + 3 NA Intergenic L1MC2|LINE|L1 -9030 NM_003404 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 592-149 chr5 167200472 167200778 + 3 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -32224 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 593-142 chr7 111799943 111800241 + 3 NA intron (NM_001363540, intron 30 of 52) HUERS-P3-int|LTR|ERV1 -8413 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 721-19 chr15 67873908 67874287 + 3 NA Intergenic LTR41|LTR|ERVL -34052 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 615-154 chrX 77311491 77311852 + 3 NA Intergenic L1M2|LINE|L1 -135718 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 273-5 chr1 40448263 40448411 + 3 NA Intergenic L1M5|LINE|L1 -1727 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 283-49 chr10 39532515 39532701 + 3 NA Intergenic ALR/Alpha|Satellite|centr 836012 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 506-276 chr8 58649128 58649374 + 3 NA intron (NM_003580, intron 1 of 30) MSTB-int|LTR|ERVL-MaLR 10156 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 375-390 chr7 121516336 121516511 + 3 NA Intergenic Intergenic -120055 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 448-293 chr9 5220916 5221183 + 3 NA Intergenic L1M3|LINE|L1 -10370 NM_002195 3641 Hs.418506 NM_002195 ENSG00000120211 INSL4 EPIL|PLACENTIN insulin like 4 protein-coding 298-97 chr12 79762311 79762486 + 3 NA Intergenic L1ME4a|LINE|L1 -71301 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 385-189 chr2 154273606 154273825 + 3 NA intron (NM_052917, intron 8 of 12) Tigger3a|DNA|TcMar-Tigger 183723 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 498-73 chr13 79748787 79749110 + 3 NA Intergenic Intergenic -55438 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 713-60 chr3 190471373 190471662 + 3 NA Intergenic L1MA4|LINE|L1 -21641 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 570-141 chr3 190869718 190870145 + 3 NA Intergenic L1ME4a|LINE|L1 -7237 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 195-51 chr12 34474529 34474605 + 3 NA Intergenic ALR/Alpha|Satellite|centr 452071 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 303-235 chr2 194161537 194161672 + 3 NA Intergenic HERVP71A-int|LTR|ERV1 -182665 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 772-26 chr17 60309390 60309767 + 3 NA intron (NM_032582, intron 2 of 33) AluJb|SINE|Alu -77933 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 610-6 chr1 117159593 117159964 + 3 NA intron (NR_045603, intron 2 of 5) intron (NR_045603, intron 2 of 5) -38029 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 417-119 chr18 65819784 65820028 + 3 NA intron (NM_001362438, intron 4 of 11) intron (NM_001362438, intron 4 of 11) 68894 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 495-63 chr14 80417201 80417435 + 3 NA intron (NR_038355, intron 8 of 8) L1M5|LINE|L1 -186261 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 1042-5 chr12 30229823 30230484 + 3 NA Intergenic Intergenic -445394 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 389-137 chr17 71255148 71255334 + 3 NA Intergenic Intergenic -53062 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 890-15 chr19 24383263 24383904 + 3 NA Intergenic ALR/Alpha|Satellite|centr -220136 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 659-61 chr20 24410443 24410876 + 3 NA Intergenic L1MB4|LINE|L1 -58540 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 460-81 chr14 48346580 48346809 + 3 NA Intergenic L1MC5|LINE|L1 -551680 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 487-121 chr18 79930782 79931034 + 3 NA intron (NM_001146345, intron 3 of 4) L1M4b|LINE|L1 20745 NM_025078 80148 Hs.288284 NM_025078 ENSG00000122490 SLC66A2 PQLC1 solute carrier family 66 member 2 protein-coding 413-169 chr20 49365536 49365702 + 3 NA 3' UTR (NM_004975, exon 2 of 2) 3' UTR (NM_004975, exon 2 of 2) 84936 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 762-53 chr5 28014759 28015172 + 3 NA Intergenic Intergenic 272700 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 1753 chr12 65540366 65541400 + 3 NA intron (NR_120433, intron 3 of 4) intron (NR_120433, intron 3 of 4) 16428 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 415-96 chr17 52910326 52910510 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 48297 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 676-63 chr2 136646792 136647163 + 3 NA Intergenic Intergenic -118568 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 706-56 chr5 43764125 43764506 + 3 NA Intergenic L1M3|LINE|L1 -161085 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 509-97 chr18 2533160 2533405 + 3 NA Intergenic MLT1E2-int|LTR|ERVL-MaLR 38223 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 466-12 chr1 115293034 115293348 + 3 NA intron (NM_002506, intron 2 of 2) MIR|SINE|MIR 10157 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 441-41 chr11 41562636 41562803 + 3 NA Intergenic Intergenic -103067 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 347-58 chr10 89966750 89966874 + 3 NA Intergenic MER21C|LTR|ERVL -9439 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 895-13 chr17 40664514 40665119 + 3 NA intron (NM_152349, intron 1 of 5) intron (NM_152349, intron 1 of 5) 361 NM_152349 125113 Hs.6920 NM_152349 ENSG00000213424 KRT222 KA21|KRT222P keratin 222 protein-coding 183-115 chr5 25961589 25961658 + 3 NA Intergenic L1MEd|LINE|L1 770670 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 770-49 chr3 99382420 99382886 + 3 NA Intergenic L1MDa|LINE|L1 -255941 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 326-293 chr20 32995800 32995950 + 3 NA intron (NM_080675, intron 7 of 12) intron (NM_080675, intron 7 of 12) 8558 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 434-295 chr8 127120631 127120954 + 3 NA Intergenic Intergenic -38571 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 528-44 chr10 123792039 123792379 + 3 NA intron (NM_198148, intron 6 of 13) intron (NM_198148, intron 6 of 13) 99598 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 425-8 chr1 112176482 112176696 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 186053 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 1206-4 chr18 6387445 6387963 + 3 NA intron (NM_001365765, intron 1 of 18) HAL1ME|LINE|L1 -13279 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 497-8 chr1 102081119 102081416 + 3 NA Intergenic Intergenic -84033 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 416-146 chr17 71422079 71422224 + 3 NA Intergenic Intergenic -219972 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 272-114 chr14 48363529 48363633 + 3 NA Intergenic Intergenic -568567 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 495-264 chr8 135382795 135383102 + 3 NA Intergenic L1PREC2|LINE|L1 -74508 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 999-15 chr8 83797728 83798277 + 3 NA Intergenic L1MA3|LINE|L1 -384785 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 486-10 chr1 97873766 97873975 + 3 NA intron (NM_000110, intron 2 of 22) L2a|LINE|L2 47189 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 882-6 chr10 64568516 64569062 + 3 NA Intergenic Intergenic -256739 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 195-61 chr14 47027619 47027705 + 3 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 315584 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 272-291 chr4 14241228 14241359 + 3 NA Intergenic Intergenic 129325 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 366-143 chr15 87166414 87166619 + 3 NA Intergenic Tigger4|DNA|TcMar-Tigger -178090 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 219-190 chr2 208606748 208606906 + 3 NA intron (NR_136588, intron 2 of 5) MLT1C|LTR|ERVL-MaLR 64185 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 393-84 chr13 82970018 82970235 + 3 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 912267 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 576-64 chr17 58913362 58913657 + 3 NA intron (NM_014906, intron 1 of 6) LTR8|LTR|ERV1 157640 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 1135-3 chr18 5801579 5802323 + 3 NA Intergenic L1MB7|LINE|L1 -38744 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 321-297 chr2 124121244 124121388 + 3 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 96029 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 600-65 chr2 79485219 79485435 + 3 NA Intergenic UCON40|Unknown|Unknown 15517 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 385-34 chr10 69647578 69647815 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 17449 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 479-271 chr9 11517492 11517686 + 3 NA Intergenic Intergenic 904383 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 888 chr10 94880828 94881317 + 3 NA Intergenic L1M2|LINE|L1 -57586 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 464-49 chr13 68002026 68002231 + 3 NA Intergenic L1M2|LINE|L1 629741 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 350-103 chr12 74239926 74240103 + 3 NA intron (NR_038300, intron 3 of 6) ERVL-B4-int|LTR|ERVL 52617 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 337-45 chr10 33362710 33362895 + 3 NA Intergenic Intergenic -27897 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 872-39 chr5 153078475 153078832 + 3 NA Intergenic Intergenic -106304 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 489-97 chr16 31917780 31918002 + 3 NA TTS (NM_003414) TTS (NM_003414) 44084 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 561-99 chr2 80824907 80825147 + 3 NA Intergenic Intergenic 511648 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 406-320 chrX 62729527 62729749 + 3 NA Intergenic ALR/Alpha|Satellite|centr 621694 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 300-261 chr22 49047745 49047866 + 3 NA Intergenic Intergenic 181035 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 369-32 chr10 28782624 28782826 + 3 NA intron (NR_120652, intron 2 of 3) intron (NR_120652, intron 2 of 3) 13325 NR_038375 100507605 Hs.119207 NR_038374 ENSG00000235824 LINC00837 - long intergenic non-protein coding RNA 837 ncRNA 321-563 chr8 90758619 90758773 + 3 NA Intergenic Intergenic -33079 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 374-24 chr1 245233054 245233257 + 3 NA intron (NR_151721, intron 1 of 4) L2c|LINE|L2 1362 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 447-55 chr12 30155829 30155997 + 3 NA Intergenic MamRTE1|LINE|RTE-BovB -371154 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 374-233 chr21 28375843 28376064 + 3 NA Intergenic Intergenic -147286 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 369-168 chr18 65056289 65056459 + 3 NA Intergenic Intergenic -693878 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 524-189 chr5 3991229 3991564 + 3 NA Intergenic Intergenic 395564 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 550-123 chr2 174185461 174185757 + 3 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 62923 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 552-146 chr3 132920871 132921283 + 3 NA Intergenic L1MEd|LINE|L1 -117211 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 402-251 chr4 148893007 148893162 + 3 NA Intergenic Intergenic 49294 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 661-23 chr14 86526423 86526804 + 3 NA Intergenic Intergenic -379165 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 429-78 chr13 33474307 33474579 + 3 NA intron (NM_001243476, intron 4 of 17) LOR1-int|LTR|ERV1 -139177 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 989-25 chr9 38169669 38170370 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -100792 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 469-270 chr7 80255512 80255780 + 3 NA Intergenic (TTTACCC)n|Simple_repeat|Simple_repeat 118793 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 519-200 chr6 88096389 88096642 + 3 NA Intergenic L1MEc|LINE|L1 48674 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 790-39 chr5 22438103 22438568 + 3 NA intron (NM_004061, intron 2 of 14) L2c|LINE|L2 -224485 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 468-56 chr12 25031019 25031281 + 3 NA intron (NM_001321724, intron 11 of 17) intron (NM_001321724, intron 11 of 17) -21078 NM_001366542 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 410-138 chr2 70762636 70762829 + 3 NA intron (NM_017482, intron 1 of 12) AluSq2|SINE|Alu 4983 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 541-134 chr2 238932791 238932984 + 3 NA Intergenic L1MD1|LINE|L1 -6618 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 537-219 chr6 132173421 132173603 + 3 NA Intergenic L1MEd|LINE|L1 39534 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 407-226 chr4 95698788 95699097 + 3 NA Intergenic Intergenic -141151 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 775-36 chr17 14506772 14507252 + 3 NA Intergenic L1ME1|LINE|L1 203272 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 627-61 chr2 228980007 228980366 + 3 NA Intergenic L1MEf|LINE|L1 251906 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 736-22 chr12 118743304 118743676 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 18189 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 271-23 chr1 187915019 187915136 + 3 NA Intergenic Intergenic 471449 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 986-3 chr1 116075077 116075626 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -36404 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 557-54 chr14 78408929 78409199 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 5345 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 341-126 chr12 89263393 89263558 + 3 NA Intergenic Intergenic 89026 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 1021-7 chr16 87533319 87533939 + 3 NA Intergenic MER21C|LTR|ERVL 39442 NR_110943 101928737 Hs.579009 NR_110943 ENSG00000260750 LOC101928737 - uncharacterized LOC101928737 ncRNA 431-50 chr11 4034801 4034976 + 3 NA intron (NM_001277962, intron 3 of 12) L1ME1|LINE|L1 -59797 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 691-35 chr2 7514952 7515212 + 3 NA Intergenic Intergenic 93821 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 324-285 chr2 151134510 151134662 + 3 NA Intergenic L1MEc|LINE|L1 127277 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 795-37 chr3 177411593 177411961 + 3 NA Intergenic AluSx1|SINE|Alu -30144 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 515-55 chr12 78948638 78948911 + 3 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) 84000 NM_005639 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 542-205 chr7 88878805 88879075 + 3 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -83203 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 603-105 chr3 9183507 9183716 + 3 NA intron (NM_014850, intron 1 of 21) L1ME4a|LINE|L1 -8882 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 523-204 chr4 97040718 97040940 + 3 NA Intergenic L1MC2|LINE|L1 -326097 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 629-64 chr2 79459454 79459848 + 3 NA Intergenic Intergenic 41193 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 333-232 chr2 43739467 43739653 + 3 NA intron (NM_172069, intron 20 of 29) Arthur1B|DNA|hAT-Tip100 -34479 NM_001193464 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 1066-11 chr2 65788915 65789347 + 3 NA Intergenic AluJb|SINE|Alu -356532 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 391-42 chr10 82872003 82872229 + 3 NA intron (NR_163253, intron 6 of 10) L1MC1|LINE|L1 -639196 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 316-600 chrX 50541967 50542130 + 3 NA Intergenic L1MCa|LINE|L1 -71223 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 645-71 chr21 30372445 30372789 + 3 NA promoter-TSS (NM_181621) promoter-TSS (NM_181621) -346 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 1099-10 chr19 27938471 27939072 + 3 NA intron (NR_146733, intron 2 of 6) intron (NR_146733, intron 2 of 6) -144831 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 348-396 chr5 21023025 21023183 + 3 NA Intergenic L1M3c|LINE|L1 -407569 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 669-102 chr7 31945040 31945496 + 3 NA intron (NM_001322059, intron 3 of 17) L1MCa|LINE|L1 125139 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 559-130 chr4 146684 147000 + 3 NA intron (NR_110527, intron 3 of 4) L1MB1|LINE|L1 18721 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 533-117 chr20 10798162 10798393 + 3 NA Intergenic L1ME2z|LINE|L1 45187 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 634-7 chr1 164032669 164033046 + 3 NA Intergenic L1M4b|LINE|L1 -526503 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 572-179 chr8 126650051 126650347 + 3 NA Intergenic Intergenic -91721 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 968-22 chr5 46186678 46187323 + 3 NA Intergenic ALR/Alpha|Satellite|centr -490620 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 606-122 chr4 101604462 101604871 + 3 NA Intergenic Intergenic -185941 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 570-65 chr14 81042419 81042738 + 3 NA intron (NM_001142626, intron 1 of 8) L1MA6|LINE|L1 86957 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 669-114 chr8 90764153 90764547 + 3 NA Intergenic Intergenic -27425 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 278-299 chr4 30708845 30709004 + 3 NA Intergenic L1M2|LINE|L1 -11445 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 413-82 chr14 45512673 45512839 + 3 NA Intergenic L1MEc|LINE|L1 202846 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 210-189 chr4 33358055 33358155 + 3 NA Intergenic Intergenic 681788 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 556-13 chr1 246996190 246996521 + 3 NA intron (NR_037892, intron 3 of 5) AluSx|SINE|Alu 11702 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 557-59 chr15 95847766 95847961 + 3 NA Intergenic Intergenic 279978 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 701-27 chr15 27684873 27685256 + 3 NA Intergenic MER4B|LTR|ERV1 414251 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 1324-8 chr8 135366107 135366908 + 3 NA Intergenic Intergenic -90949 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 447-67 chr13 98059141 98059437 + 3 NA Intergenic MIR|SINE|MIR -83300 NM_001286839 10160 Hs.403917 NM_005766 ENSG00000152767 FARP1 CDEP|FARP1-IT1|PLEKHC2|PPP1R75 FERM, ARH/RhoGEF and pleckstrin domain protein 1 protein-coding 703-5 chr1 246256264 246256746 + 3 NA intron (NM_022743, intron 5 of 11) L1PA16|LINE|L1 160907 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 484-282 chr9 32838580 32838810 + 3 NA Intergenic Intergenic 55155 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 829-12 chr11 87336824 87337249 + 3 NA Intergenic L1ME1|LINE|L1 299102 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 577-35 chr10 112029601 112029889 + 3 NA Intergenic MER67B|LTR|ERV1 154020 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 444-176 chr4 111202326 111202581 + 3 NA Intergenic Intergenic -341806 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 361-235 chr2 152680084 152680350 + 3 NA intron (NM_001365601, intron 6 of 24) intron (NM_001365601, intron 6 of 24) 37244 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 591-25 chr11 81149812 81150132 + 3 NA Intergenic Intergenic -387169 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 385-11 chr1 166443712 166443896 + 3 NA Intergenic L1MA3|LINE|L1 46235 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 642-44 chr18 38689946 38690373 + 3 NA Intergenic Intergenic 932016 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 496-237 chr6 90872531 90872812 + 3 NA Intergenic Intergenic -285599 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 865-3 chr1 158384190 158384743 + 3 NA Intergenic L1M5|LINE|L1 15000 NM_001004475 128360 Hs.553588 NM_001004475 ENSG00000186306 OR10T2 OR1-3 olfactory receptor family 10 subfamily T member 2 protein-coding 338-215 chr17 61264150 61264296 + 3 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 103481 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 745-49 chr4 93421251 93421742 + 3 NA intron (NM_001286838, intron 8 of 14) intron (NM_001286838, intron 8 of 14) -407257 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 735-7 chr1 247069524 247069882 + 3 NA intron (NM_033213, intron 1 of 3) L1MA2|LINE|L1 9108 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 331-468 chr6 120568417 120568609 + 3 NA Intergenic Intergenic 553334 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 639-91 chr4 115171372 115171699 + 3 NA Intergenic Intergenic -57915 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 324-508 chr7 104114864 104115089 + 3 NA Intergenic L1MB7|LINE|L1 93037 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 765-56 chr5 38765457 38765940 + 3 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -45425 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 308-42 chr1 239331468 239331650 + 3 NA Intergenic L1MC1|LINE|L1 -55009 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 398-149 chr19 52703131 52703336 + 3 NA 3' UTR (NM_030972, exon 7 of 7) 3' UTR (NM_030972, exon 7 of 7) -12652 NM_001277947 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 852-16 chr14 46106213 46106648 + 3 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 42271 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1039-9 chr17 60822511 60823090 + 3 NA intron (NM_001330413, intron 7 of 25) MLT1H2|LTR|ERVL-MaLR 144949 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 358-11 chr1 106259571 106259767 + 3 NA Intergenic L1PB4|LINE|L1 -231416 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 367-322 chr4 32630412 32630618 + 3 NA Intergenic L1M3c|LINE|L1 279477 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 751-25 chr17 70786964 70787261 + 3 NA Intergenic Intergenic 415067 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 381-34 chr1 244572108 244572337 + 3 NA intron (NM_001130957, intron 10 of 21) intron (NM_001130957, intron 10 of 21) -80826 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 337-439 chr5 31130544 31130778 + 3 NA Intergenic Intergenic -63025 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 574-136 chr5 30351593 30351853 + 3 NA Intergenic Intergenic 471163 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 862-25 chr4 31426258 31426775 + 3 NA Intergenic Intergenic -80028 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 492-137 chr2 127994166 127994386 + 3 NA intron (NM_001330303, intron 11 of 19) AluJb|SINE|Alu 33019 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 345-91 chr11 60066439 60066592 + 3 NA intron (NM_001031666, intron 2 of 4) L2a|LINE|L2 9850 NM_001031666 932 Hs.99960 NM_006138 ENSG00000149516 MS4A3 CD20L|HTM4 membrane spanning 4-domains A3 protein-coding 305-504 chr7 41013124 41013306 + 3 NA Intergenic Intergenic -33276 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 456-13 chr1 152698486 152698685 + 3 NA intron (NM_178428, intron 1 of 1) intron (NM_178428, intron 1 of 1) 240 NM_178428 353139 Hs.334054 NM_178428 ENSG00000187173 LCE2A LEP9 late cornified envelope 2A protein-coding 608-163 chr8 137442519 137442833 + 3 NA Intergenic Intergenic -29088 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 693-116 chrX 130439984 130440285 + 3 NA Intergenic L1M1|LINE|L1 38147 NM_016024 51634 Hs.740515 NM_016024 ENSG00000134597 RBMX2 CGI-79|Snu17 RNA binding motif protein X-linked 2 protein-coding 1110-9 chr2 52853327 52854153 + 3 NA Intergenic L1MCa|LINE|L1 -151125 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 437-282 chr8 127076998 127077243 + 3 NA intron (NR_119373, intron 2 of 3) intron (NR_119373, intron 2 of 3) -2754 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 501-9 chr1 106715069 106715344 + 3 NA Intergenic L1PREC2|LINE|L1 -103033 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 543-67 chr12 125714476 125714837 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 92204 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 248-289 chr4 106277447 106277564 + 3 NA intron (NM_001290768, intron 3 of 26) L1ME2z|LINE|L1 -38105 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 587-54 chr16 9829695 9829985 + 3 NA intron (NM_001134408, intron 8 of 13) intron (NM_001134408, intron 8 of 13) 352227 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 525-27 chr10 56090446 56090784 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR 270644 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 748-49 chr2 59642695 59643184 + 3 NA Intergenic L1ME3|LINE|L1 425231 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 502-225 chr5 107264013 107264305 + 3 NA Intergenic Intergenic -253145 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 453-4 chr1 49168305 49168475 + 3 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -89021 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 325-196 chr16 50529189 50529341 + 3 NA Intergenic Intergenic -19131 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 828-49 chr8 95859002 95859446 + 3 NA Intergenic Intergenic 89124 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 485-95 chr16 63895469 63895873 + 3 NA Intergenic Intergenic 1226392 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 536-192 chr6 54169801 54170048 + 3 NA intron (NM_001281746, intron 9 of 11) intron (NM_001281746, intron 9 of 11) 58481 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 613-124 chr7 53312758 53313030 + 3 NA Intergenic Intergenic 277261 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 800-5 chr1 178422166 178422547 + 3 NA intron (NM_004841, intron 3 of 15) intron (NM_004841, intron 3 of 15) 80905 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 496-171 chr3 34135555 34135754 + 3 NA Intergenic L1PB4|LINE|L1 337024 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 539-153 chr3 193306948 193307283 + 3 NA promoter-TSS (NR_046758) promoter-TSS (NR_046758) -129 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 427-3 chr1 56564587 56564737 + 3 NA intron (NM_003713, intron 1 of 5) intron (NM_003713, intron 1 of 5) 14901 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 281-194 chr2 18432590 18432689 + 3 NA Intergenic Intergenic 128014 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 442-99 chr17 12871306 12871547 + 3 NA intron (NM_001321164, intron 1 of 20) MSTA|LTR|ERVL-MaLR 45916 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 267-179 chr2 47220486 47220667 + 3 NA intron (NR_110207, intron 2 of 2) intron (NR_110207, intron 2 of 2) -43640 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 385-123 chr16 55326708 55326880 + 3 NA intron (NM_024335, intron 2 of 5) MIRc|SINE|MIR 2235 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 481-83 chr14 38505782 38506023 + 3 NA Intergenic Intergenic -249809 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 495-32 chr11 16889587 16889895 + 3 NA intron (NM_001329630, intron 3 of 26) L1PA15-16|LINE|L1 36281 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 1251-3 chr11 112829045 112829762 + 3 NA Intergenic L2c|LINE|L2 -132017 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 532-121 chr2 79403402 79403660 + 3 NA Intergenic MER3|DNA|hAT-Charlie 97313 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 594-43 chr13 102282710 102283059 + 3 NA intron (NM_001321940, intron 1 of 5) MER103C|DNA|hAT-Charlie 27802 NM_001321934 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 452-68 chr13 54931910 54932208 + 3 NA Intergenic Intergenic -242395 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 433-32 chr10 108739646 108739837 + 3 NA Intergenic L1PA15|LINE|L1 -670448 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 635 chr1 40493824 40494226 + 3 NA intron (NM_001320178, intron 5 of 5) intron (NM_001320178, intron 5 of 5) -14694 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 434-143 chr2 73479273 73479435 + 3 NA intron (NM_015120, intron 9 of 22) L1MD1|LINE|L1 22251 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 260-397 chr7 11666373 11666561 + 3 NA intron (NM_015204, intron 1 of 26) Tigger4b|DNA|TcMar-Tigger 165731 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 626-153 chr9 118410566 118410884 + 3 NA Intergenic Intergenic -268946 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 564-126 chr3 95812371 95812588 + 3 NA Intergenic Intergenic -129286 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 554-76 chr14 70497537 70497811 + 3 NA Intergenic L1PA12|LINE|L1 -13918 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 539-143 chr3 89498296 89498760 + 3 NA Intergenic Intergenic 390907 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 628-12 chr1 108356801 108357080 + 3 NA Intergenic L1MEc|LINE|L1 -93342 NM_001143988 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 758-33 chr18 27197771 27198246 + 3 NA Intergenic L2c|LINE|L2 -12700 NM_031422 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 779-6 chr1 195071551 195072001 + 3 NA Intergenic L2a|LINE|L2 1016939 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 539-158 chr4 69798562 69798832 + 3 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -38077 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 527-180 chr3 110480212 110480471 + 3 NA Intergenic Intergenic 589618 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 370-400 chr6 95398522 95398726 + 3 NA Intergenic Intergenic 178827 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 691-84 chr8 64465582 64466026 + 3 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 86655 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 552-17 chr10 48762758 48762993 + 3 NA intron (NM_020945, intron 13 of 61) MLT1G3|LTR|ERVL-MaLR 77412 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 668-86 chr5 116722248 116722583 + 3 NA Intergenic Intergenic 39794 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 548-55 chr12 76333115 76333395 + 3 NA Intergenic L2b|LINE|L2 15160 NM_024685 79738 Hs.96322 NM_024685 ENSG00000179941 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 516-236 chr7 80577303 80577577 + 3 NA Intergenic L2|LINE|L2 -24767 NM_001001547 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 359-513 chr9 102654288 102654509 + 3 NA intron (NR_103830, intron 4 of 4) MER6A|DNA|TcMar-Tigger 134761 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 404-304 chr8 34012163 34012405 + 3 NA Intergenic L1MCa|LINE|L1 -412178 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 444-243 chr7 57249572 57249794 + 3 NA Intergenic Intergenic -27509 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 802-19 chr14 55785868 55786183 + 3 NA intron (NR_026796, intron 3 of 3) intron (NR_026796, intron 3 of 3) 10649 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 899-28 chr7 96960085 96960458 + 3 NA Intergenic Intergenic -45282 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 662-54 chr2 228092109 228092434 + 3 NA intron (NM_030623, intron 3 of 10) (TA)n|Simple_repeat|Simple_repeat 89374 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 661-80 chr5 45974880 45975348 + 3 NA Intergenic ALR/Alpha|Satellite|centr -278734 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 299-365 chr5 46161611 46161715 + 3 NA Intergenic ALR/Alpha|Satellite|centr -465283 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 492-211 chr5 101519872 101520074 + 3 NA Intergenic Intergenic -616691 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 568-194 chr8 72432239 72432620 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -104796 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 677-57 chr3 77617204 77617556 + 3 NA intron (NM_001290039, intron 22 of 26) intron (NM_001290039, intron 22 of 26) 431583 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 452-59 chr12 80448249 80448497 + 3 NA intron (NM_001145026, intron 3 of 44) L1PB4|LINE|L1 4138 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 525-35 chr10 119988834 119989076 + 3 NA Intergenic MIR|SINE|MIR 30442 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 375-130 chr14 82071266 82071424 + 3 NA Intergenic Intergenic -328207 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 613-104 chr5 30367545 30367950 + 3 NA Intergenic Intergenic 487187 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 643-96 chr5 102881313 102881686 + 3 NA intron (NR_033440, intron 2 of 23) L1M5|LINE|L1 15676 NR_033440 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 490-307 chr8 132286797 132286986 + 3 NA intron (NM_004519, intron 1 of 14) MSTB2|LTR|ERVL-MaLR 160371 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 1015-9 chr2 101963539 101964116 + 3 NA Intergenic MER67C|LTR|ERV1 -19638 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 302-228 chr2 128585783 128585971 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -267009 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 912-9 chr12 1887221 1887693 + 3 NA intron (NM_172364, intron 6 of 37).2 intron (NM_172364, intron 6 of 37).2 31195 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 415-20 chr1 213965495 213965682 + 3 NA intron (NR_037850, intron 2 of 5) MIRb|SINE|MIR 20565 NR_037850 100505832 Hs.664625 NR_037850 PROX1-AS1 - PROX1 antisense RNA 1 ncRNA 522-116 chr19 27665211 27665412 + 3 NA Intergenic ALR/Alpha|Satellite|centr -128120 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 965-7 chr19 22306808 22307317 + 3 NA intron (NM_001242680, intron 3 of 3) L1M4|LINE|L1 20621 NM_001242680 100287226 Hs.531629 NM_001242680 ENSG00000196350 ZNF729 - zinc finger protein 729 protein-coding 1049-11 chr2 103005987 103006611 + 3 NA Intergenic Intergenic -21870 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 1097-14 chr7 89858562 89859163 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 -260538 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 1085-2 chr10 43553706 43554309 + 3 NA Intergenic L1M4|LINE|L1 14452 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 786-21 chr14 41860188 41860583 + 3 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 253529 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 367-89 chr12 38649419 38649574 + 3 NA Intergenic Intergenic 256095 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 428-219 chr4 101582844 101583047 + 3 NA Intergenic Intergenic -207662 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 502-133 chr2 23353301 23353472 + 3 NA Intergenic AluSc|SINE|Alu -31793 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 414-80 chr14 20210490 20210695 + 3 NA Intergenic Intergenic -13118 NM_001004480 122748 Hs.553575 NM_001004480 ENSG00000176219 OR11H6 - olfactory receptor family 11 subfamily H member 6 protein-coding 472-333 chr8 132165400 132165562 + 3 NA intron (NM_001204824, intron 8 of 14) intron (NM_001204824, intron 8 of 14) -60216 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 507-172 chr3 176513427 176513657 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 -1561 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 491-76 chr15 58573935 58574134 + 3 NA Intergenic MER96B|DNA|hAT -75299 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 744-32 chr2 102798161 102798604 + 3 NA intron (NM_001321345, intron 4 of 4) intron (NM_001321345, intron 4 of 4) 36351 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 370-322 chr3 181101602 181101790 + 3 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) 45016 NR_075092 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 725-47 chr5 32657427 32657813 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -33252 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 1071-10 chr2 114829860 114830677 + 3 NA intron (NR_132105, intron 1 of 1) L2c|LINE|L2 3280 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 430-314 chr8 111665247 111665446 + 3 NA Intergenic Intergenic 288707 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 641-18 chr11 50402907 50403329 + 3 NA Intergenic ALR/Alpha|Satellite|centr -6029 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 388-290 chr5 117183764 117184008 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -231626 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 1014-2 chr1 178672694 178673265 + 3 NA Intergenic L1MA9|LINE|L1 -4770 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 462-272 chr7 110654862 110655136 + 3 NA Intergenic Intergenic -436007 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 839-16 chr16 59287187 59287607 + 3 NA Intergenic L2c|LINE|L2 467794 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 270-153 chr17 54573965 54574147 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -326635 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 549-225 chr9 134257640 134257927 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X 37614 NR_146518 105376310 Hs.573484 NR_146518 ENSG00000223729 LINC02247 - long intergenic non-protein coding RNA 2247 ncRNA 468-289 chr6 148059245 148059525 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -212943 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 448-226 chr5 149058300 149058477 + 3 NA intron (NM_024577, intron 1 of 16) L1M3|LINE|L1 4021 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 391-104 chr14 61687190 61687358 + 3 NA intron (NR_047116, intron 1 of 1) L1MC2|LINE|L1 -8239 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 696-9 chr1 224816154 224816644 + 3 NA Intergenic L1MB2|LINE|L1 -113255 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 536-210 chr7 33766661 33767062 + 3 NA Intergenic L1ME3F|LINE|L1 -138054 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 581-107 chr3 189607659 189608133 + 3 NA intron (NM_001329964, intron 1 of 13) intron (NM_001329964, intron 1 of 13) 11150 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1111-8 chr21 33818036 33818697 + 3 NA exon (NM_001331012, exon 22 of 29) exon (NM_001331012, exon 22 of 29) 97438 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 448-216 chr5 88979013 88979202 + 3 NA intron (NR_136221, intron 3 of 6) MIRb|SINE|MIR -75002 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 512-244 chr6 143295514 143295701 + 3 NA intron (NM_016108, intron 4 of 5) L2b|LINE|L2 130825 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 502-50 chr11 48719282 48719485 + 3 NA Intergenic ALR/Alpha|Satellite|centr 230590 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 909-22 chr5 60002938 60003547 + 3 NA intron (NM_001165899, intron 2 of 16) L1MA9|LINE|L1 -109516 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 604-67 chr18 6365193 6365583 + 3 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 2295 NM_001365770 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 779-24 chr16 67352023 67352476 + 3 NA intron (NM_018296, intron 5 of 13) intron (NM_018296, intron 5 of 13) 4894 NM_001161575 55282 Hs.125139 NM_018296 ENSG00000159708 LRRC36 RORBP70|XLHSRF2 leucine rich repeat containing 36 protein-coding 403-294 chr8 14157056 14157245 + 3 NA intron (NM_001322880, intron 4 of 6) Tigger3b|DNA|TcMar-Tigger 527460 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 556-60 chr14 49091853 49092108 + 3 NA Intergenic LTR16E2|LTR|ERVL 494400 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 515-174 chr4 10385928 10386166 + 3 NA Intergenic Intergenic 71379 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 749-59 chr20 2608319 2608749 + 3 NA intron (NM_080751, intron 11 of 19) AluSx|SINE|Alu -44098 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 537-130 chr2 149362198 149362560 + 3 NA intron (NM_194317, intron 1 of 4) MER39|LTR|ERV1 31792 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 821-53 chr8 72899440 72899927 + 3 NA intron (NM_004770, intron 2 of 2) L1P4|LINE|L1 -109181 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 466-164 chr22 36272922 36273183 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 13855 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 335-252 chr2 103021456 103021704 + 3 NA Intergenic Intergenic -37151 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 648-90 chr3 76120760 76121142 + 3 NA Intergenic Intergenic -335402 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 328-94 chr11 104044316 104044456 + 3 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 7746 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 498-121 chr2 77338438 77338635 + 3 NA intron (NR_146416, intron 1 of 1) L1PA17|LINE|L1 183840 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 476-236 chr5 174154067 174154391 + 3 NA Intergenic L1ME1|LINE|L1 108523 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 669-105 chr7 63947869 63948260 + 3 NA Intergenic L1PA13|LINE|L1 -50742 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 659-73 chr3 99814537 99814988 + 3 NA Intergenic Intergenic -3100 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 1071-25 chr8 103643026 103643614 + 3 NA intron (NM_001348497, intron 1 of 22) L1MD3|LINE|L1 -141410 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 637-27 chr12 38590918 38591244 + 3 NA Intergenic Intergenic 274307 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 361-162 chr16 65153118 65153305 + 3 NA intron (NR_110918, intron 3 of 3) intron (NR_110918, intron 3 of 3) 23362 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 556-183 chr5 150900843 150901080 + 3 NA 3' UTR (NM_001346557, exon 4 of 4) 3' UTR (NM_001346557, exon 4 of 4) 4022 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1096-8 chr17 56734169 56734568 + 3 NA Intergenic MLT1O|LTR|ERVL-MaLR 99552 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 449-18 chr1 215566860 215567066 + 3 NA promoter-TSS (NM_016121) promoter-TSS (NM_016121) -341 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 673-54 chr2 52894663 52895176 + 3 NA Intergenic L1M2|LINE|L1 -192304 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 445-225 chr5 157967826 157968039 + 3 NA Intergenic Intergenic -108787 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 639-95 chr5 46261237 46261648 + 3 NA Intergenic ALR/Alpha|Satellite|centr -565062 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 444-24 chr10 65156537 65156832 + 3 NA Intergenic Intergenic -232166 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 411-41 chr10 108045810 108046049 + 3 NA intron (NR_125760, intron 1 of 4) intron (NR_125760, intron 1 of 4) 23364 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 450-152 chr2 154295166 154295399 + 3 NA intron (NM_052917, intron 8 of 12) LTR78B|LTR|ERV1 162156 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 512-121 chr2 81023317 81023632 + 3 NA Intergenic L1PB2|LINE|L1 443472 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 493-85 chr14 70362688 70363006 + 3 NA intron (NM_001202548, intron 3 of 5) MIRc|SINE|MIR -3164 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 454-51 chr11 36551116 36551341 + 3 NA Intergenic Intergenic -16785 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 496-144 chr2 160156767 160157033 + 3 NA intron (NM_001282390, intron 6 of 13) intron (NM_001282390, intron 6 of 13) 43372 NM_001282389 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 486-255 chr6 39589712 39589882 + 3 NA intron (NM_001289020, intron 7 of 21) intron (NM_001289020, intron 7 of 21) 135611 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 589-149 chr7 49277982 49278226 + 3 NA Intergenic MIR|SINE|MIR 353557 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 615-106 chr5 29918216 29918560 + 3 NA Intergenic L1PA13|LINE|L1 37828 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 527-213 chr5 105349329 105349625 + 3 NA Intergenic Intergenic 250003 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 351-105 chr13 46210685 46210844 + 3 NA Intergenic Intergenic -1164 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 363-149 chr14 87471469 87471676 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 183722 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 699-23 chr12 55557289 55557644 + 3 NA Intergenic L1PB4|LINE|L1 6239 NM_001005494 341418 Hs.495021 NM_001005494 ENSG00000179626 OR6C4 OR12-10 olfactory receptor family 6 subfamily C member 4 protein-coding 450-160 chr2 224399230 224399495 + 3 NA intron (NM_001122779, intron 1 of 1) intron (NM_001122779, intron 1 of 1) 2632 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 587-65 chr19 8809416 8809825 + 3 NA TTS (NM_001304350) TTS (NM_001304350) 12443 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 531-184 chr4 119585290 119585521 + 3 NA intron (NM_033437, intron 3 of 20) intron (NM_033437, intron 3 of 20) 42332 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 692-7 chr1 247031316 247031702 + 3 NA intron (NR_037894, intron 1 of 6) HERVL74-int|LTR|ERVL -23452 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 743-47 chr2 226096447 226096775 + 3 NA Intergenic L1P4a|LINE|L1 -46183 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 684-77 chr3 196698739 196699030 + 3 NA Intergenic Intergenic 13366 NM_032898 84984 Hs.282800 NM_032898 ENSG00000174007 CEP19 C3orf34|MOSPGF centrosomal protein 19 protein-coding 722-51 chr3 74597648 74597968 + 3 NA Intergenic Intergenic -76668 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 482-181 chr4 46517455 46517733 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie -127466 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 556-152 chr4 35713242 35713544 + 3 NA Intergenic L1MA4A|LINE|L1 530546 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 471-75 chr13 76168158 76168522 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -233208 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 499-81 chr17 10920856 10921130 + 3 NA Intergenic Intergenic -82906 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 571-63 chr18 33342836 33343126 + 3 NA intron (NM_001308126, intron 9 of 23) ERVL-int|LTR|ERVL 97590 NM_001371121 446-106 chr15 33841259 33841470 + 3 NA intron (NM_001243996, intron 89 of 102) intron (NM_001243996, intron 89 of 102) -127133 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 793-20 chr15 87499198 87499502 + 3 NA Intergenic Intergenic -77579 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 534-103 chr19 58283308 58283593 + 3 NA intron (NR_144447, intron 1 of 6) MSTC|LTR|ERVL-MaLR 4484 NR_144447 108903150 Hs.715293 NR_144447 ENSG00000267216 ZNF8-ERVK3-1 - ZNF8-ERVK3-1 readthrough ncRNA 312-82 chr11 55200215 55200400 + 3 NA Intergenic ALR/Alpha|Satellite|centr -61848 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 444-15 chr1 187973076 187973277 + 3 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 529548 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 404-20 chr1 176777000 176777204 + 3 NA intron (NM_020318, intron 17 of 22) MIR3|SINE|MIR 252343 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 1193-7 chr2 182022553 182023281 + 3 NA intron (NM_001261425, intron 2 of 5) HAL1b|LINE|L1 37064 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 463-22 chr1 164233938 164234181 + 3 NA Intergenic MIR|SINE|MIR -325301 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 705-30 chr14 104000386 104000887 + 3 NA intron (NM_153046, intron 13 of 35) AluSz|SINE|Alu -58107 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 590-5 chr1 66449871 66450077 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -83619 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 704-88 chr8 129605120 129605535 + 3 NA intron (NR_130917, intron 1 of 3) L1MB7|LINE|L1 -30309 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 470-225 chr5 152169015 152169230 + 3 NA intron (NR_109876, intron 1 of 2) MER113|DNA|hAT-Charlie 210224 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 353-79 chr11 34710341 34710527 + 3 NA Intergenic L1MEc|LINE|L1 77868 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 477-271 chr8 50993865 50994167 + 3 NA Intergenic L1M4|LINE|L1 815429 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 410-270 chr6 165175988 165176262 + 3 NA Intergenic L1M4|LINE|L1 133480 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 352-419 chr5 60437331 60437521 + 3 NA intron (NM_001364599, intron 1 of 16) MIRb|SINE|MIR -50287 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 448-301 chr9 100173614 100173801 + 3 NA intron (NR_134606, intron 3 of 16) AluSz|SINE|Alu 74464 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 280-450 chr9 124704040 124704184 + 3 NA intron (NM_033334, intron 2 of 9) L1MB7|LINE|L1 10402 NR_029782 406956 NR_029782 ENSG00000207737 MIR181B2 MIRN181B2|mir-181b-2 microRNA 181b-2 ncRNA 227-312 chr6 95126913 95127083 + 3 NA Intergenic Intergenic 450453 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 592-186 chrUn_KI270442v1 77823 78137 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 492-184 chr4 32052052 32052255 + 3 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -29731 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 517-171 chr22 43819082 43819407 + 3 NA Intergenic Intergenic -6939 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 298-349 chr5 2675507 2675606 + 3 NA Intergenic Intergenic -37035 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 601-154 chr9 32178044 32178370 + 3 NA Intergenic Intergenic -206396 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 207-86 chr14 82316926 82317006 + 3 NA Intergenic Intergenic -325666 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 666-8 chr10 56481470 56481758 + 3 NA Intergenic L1MB8|LINE|L1 -120341 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 804-20 chr14 86720213 86720762 + 3 NA Intergenic Intergenic -185291 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 626-34 chr12 95762706 95763121 + 3 NA intron (NM_001329701, intron 2 of 9) intron (NM_001329701, intron 2 of 9) 27282 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 504-253 chr8 36374357 36374555 + 3 NA Intergenic L2b|LINE|L2 -409918 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 486-82 chr14 63594022 63594367 + 3 NA Intergenic Intergenic 47677 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 479-179 chr5 4200934 4201232 + 3 NA Intergenic MER21B|LTR|ERVL -572398 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 1142-3 chr2 35993281 35993817 + 3 NA Intergenic Intergenic 362021 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 438-100 chr18 49516058 49516291 + 3 NA Intergenic Intergenic -23710 NM_001199342 6139 Hs.293653 NM_000985 ENSG00000265681 RPL17 L17|PD-1|RPL23 ribosomal protein L17 protein-coding 954-15 chr16 74097246 74097629 + 3 NA Intergenic MER34C_|LTR|ERV1 118084 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 305-323 chr21 35086082 35086241 + 3 NA Intergenic Intergenic -36863 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 803-18 chr18 2469505 2469946 + 3 NA Intergenic L1MC5a|LINE|L1 101780 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 551-149 chr5 31320135 31320365 + 3 NA TTS (NM_001362435) TTS (NM_001362435) 126564 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 587-74 chr2 103718766 103719161 + 3 NA Intergenic L1PREC2|LINE|L1 689369 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 495-54 chr12 118846865 118847139 + 3 NA Intergenic Intergenic -13466 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 725-12 chr10 129204966 129205303 + 3 NA Intergenic Intergenic -262107 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 513-33 chr10 85088527 85088808 + 3 NA Intergenic L1M4|LINE|L1 110238 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 607-99 chr3 85122654 85122894 + 3 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -60510 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 439-312 chrX 62692536 62692802 + 3 NA Intergenic ALR/Alpha|Satellite|centr 658663 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 286-119 chr14 53140575 53140738 + 3 NA intron (NM_030637, intron 1 of 11) L1MCc|LINE|L1 12667 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 519-181 chr5 99008053 99008361 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -78493 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 576-144 chr6 12648044 12648431 + 3 NA Intergenic Intergenic -62833 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 366-146 chr15 98218546 98218711 + 3 NA Intergenic Intergenic 112930 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 981-32 chr8 103725208 103725632 + 3 NA intron (NM_001348496, intron 3 of 23) L1ME2|LINE|L1 -93800 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 619-118 chr7 11777160 11777562 + 3 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 54837 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 643-24 chr12 39672708 39672990 + 3 NA intron (NM_001031748, intron 7 of 12) L1MA4A|LINE|L1 46666 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 500-48 chr11 32141428 32141652 + 3 NA Intergenic AluJb|SINE|Alu 2372 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 411-193 chr3 170459972 170460168 + 3 NA 3' UTR (NM_020949, exon 8 of 8) 3' UTR (NM_020949, exon 8 of 8) -7215 NR_135555 101928583 Hs.407600 NR_135555 ENSG00000285051 SLC7A14-AS1 - SLC7A14 antisense RNA 1 ncRNA 490-296 chr8 106156610 106156848 + 3 NA Intergenic L1ME3G|LINE|L1 -96226 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 586-16 chr1 221559314 221559543 + 3 NA Intergenic Intergenic 177472 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 360-496 chr9 137999229 137999434 + 3 NA intron (NM_001243812, intron 15 of 45) intron (NM_001243812, intron 15 of 45) 45740 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 696-70 chr3 76459466 76459834 + 3 NA Intergenic Intergenic -580449 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 545-157 chr4 36590822 36591123 + 3 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 50928 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 556-207 chr7 62601735 62601999 + 3 NA Intergenic ALR/Alpha|Satellite|centr 702189 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 419-67 chr12 46411458 46411655 + 3 NA intron (NR_125381, intron 2 of 2) L2c|LINE|L2 27449 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 430-331 chr9 29518543 29518739 + 3 NA Intergenic Charlie5|DNA|hAT-Charlie -305040 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 509-211 chr5 180763063 180763355 + 3 NA Intergenic L1M4c|LINE|L1 -23151 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 437-222 chr5 51655255 51655436 + 3 NA Intergenic L2c|LINE|L2 271897 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 467-87 chr14 82419284 82419631 + 3 NA Intergenic L1PA16|LINE|L1 -223175 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 564-141 chr4 61736846 61737101 + 3 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 424792 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 434-28 chr1 227339731 227339923 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -21335 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 432-138 chr2 139665238 139665475 + 3 NA Intergenic Intergenic 768032 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 389-108 chr14 85518237 85518377 + 3 NA Intergenic Intergenic -11718 NR_144386 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 475-250 chr6 169584435 169584647 + 3 NA intron (NM_182552, intron 23 of 25) L1MA9|LINE|L1 117488 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 934-35 chr8 139476028 139476665 + 3 NA Intergenic Intergenic 226777 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 523-290 chr9 138090766 138091056 + 3 NA intron (NM_001243812, intron 35 of 45) L1MA5|LINE|L1 -45840 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 598-37 chr12 63514833 63515286 + 3 NA Intergenic LTR107_Mam|LTR|LTR 153434 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 382-49 chr10 108809879 108810062 + 3 NA Intergenic Intergenic -740677 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 421-223 chr4 130108121 130108393 + 3 NA Intergenic Intergenic -268104 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 556-41 chr11 110934037 110934326 + 3 NA Intergenic MIR3|SINE|MIR 163137 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 439-167 chr21 27154102 27154330 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -187128 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 422-147 chr2 72015786 72016008 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger 131965 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 309-570 chr8 137172268 137172454 + 3 NA Intergenic Intergenic 241227 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 255-222 chr2 199174094 199174236 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 283774 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 223-363 chr9 35175474 35175634 + 3 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 13545 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 498-82 chr14 54164641 54164855 + 3 NA Intergenic MER117|DNA|hAT-Charlie -207857 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 622-17 chr11 107114324 107114641 + 3 NA Intergenic L1PA13|LINE|L1 -96006 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 546-123 chr20 10142957 10143367 + 3 NA intron (NR_040710, intron 2 of 4) MIRb|SINE|MIR -75636 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 753-30 chr17_KI270859v1_alt 30474 30965 + 3 NA NA Intergenic NA NA 1006-12 chr17 33857928 33858343 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 298671 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 535-238 chr8 50639327 50639672 + 3 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 475368 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 713-8 chr1 221893634 221894108 + 3 NA Intergenic AluSx1|SINE|Alu -53205 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 1000-22 chr6 151566504 151566930 + 3 NA intron (NM_025059, intron 5 of 10) Charlie10|DNA|hAT-Charlie 72700 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 761-63 chr7 1617435 1617820 + 3 NA TTS (NR_001288) TTS (NR_001288) 3157 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 1181-16 chr6 63414037 63414877 + 3 NA Intergenic L1MA10|LINE|L1 -94474 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 505-275 chr6 131071166 131071471 + 3 NA Intergenic Intergenic -7996 NM_001350307 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 374-416 chr9 83513377 83513584 + 3 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) 24921 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 315-15 chr1 86634013 86634217 + 3 NA promoter-TSS (NR_024604) promoter-TSS (NR_024604) -161 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 978-2 chr1 159537529 159538025 + 3 NA Intergenic L1ME2|LINE|L1 -1770 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 740-8 chr1 221653281 221653727 + 3 NA Intergenic L1ME2|LINE|L1 83396 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 307-227 chr2 38644530 38644736 + 3 NA Intergenic Intergenic -21481 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 655-68 chr2 226489152 226489446 + 3 NA Intergenic Intergenic 169494 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 347-393 chr5 46088549 46088777 + 3 NA Intergenic ALR/Alpha|Satellite|centr -392283 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 387-236 chr3 140591259 140591449 + 3 NA Intergenic Intergenic -82565 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 664-121 chr8 135372413 135372758 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -84871 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 408-172 chr2 179925452 179925618 + 3 NA Intergenic L1ME2|LINE|L1 -63923 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 309-482 chr6 93491052 93491250 + 3 NA Intergenic MIRc|SINE|MIR -71569 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 388-236 chr3 146764443 146764609 + 3 NA Intergenic Intergenic -157397 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 556-163 chr4 99151799 99152017 + 3 NA intron (NR_037884, intron 2 of 9) MER4-int|LTR|ERV1 -7610 NM_000670 127 Hs.1219 NM_000670 ENSG00000198099 ADH4 ADH-2|HEL-S-4 alcohol dehydrogenase 4 (class II), pi polypeptide protein-coding 1131-7 chr4 37004004 37004575 + 3 NA intron (NR_134669, intron 1 of 1) THE1B|LTR|ERVL-MaLR 2510 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 645-72 chr21 32895656 32895929 + 3 NA Intergenic Intergenic -63096 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 678-22 chr12 70325929 70326267 + 3 NA intron (NM_001199302, intron 5 of 16) intron (NM_001199302, intron 5 of 16) -40192 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 403-38 chr10 122270914 122271079 + 3 NA promoter-TSS (NM_144587) promoter-TSS (NM_144587) -300 NM_001318189 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 700-32 chr15 60061968 60062408 + 3 NA Intergenic Intergenic 57877 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 585-38 chr14 32757043 32757385 + 3 NA intron (NM_004274, intron 11 of 13) L1MA8|LINE|L1 -181665 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 589-32 chr14 63888722 63889089 + 3 NA intron (NM_015180, intron 1 of 114) AluJb|SINE|Alu 35901 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 411-298 chr8 132702396 132702649 + 3 NA Intergenic Intergenic -26977 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 541-8 chr1 94939635 94940022 + 3 NA intron (NR_033998, intron 2 of 3) Tigger2a|DNA|TcMar-Tigger 11800 NR_033998 729970 Hs.297988 NR_033998 ENSG00000235501 LOC729970 - hCG2028352-like ncRNA 285-381 chr7 16402467 16402609 + 3 NA intron (NM_001101426, intron 2 of 9) intron (NM_001101426, intron 2 of 9) 19000 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 583-118 chr3 191702987 191703287 + 3 NA Intergenic L1MA4A|LINE|L1 241974 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 878-2 chr1 50283293 50283761 + 3 NA Intergenic MIR3|SINE|MIR 139916 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 455-132 chr2 143599001 143599179 + 3 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -337977 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 451-173 chr5 21041650 21041927 + 3 NA Intergenic Intergenic -417692 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 901-40 chr9 24697459 24698139 + 3 NA Intergenic L1PA13|LINE|L1 -151902 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 301-446 chr8 70081674 70081786 + 3 NA Intergenic Intergenic -10478 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 357-272 chr3 74938165 74938352 + 3 NA Intergenic Intergenic -276218 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 551-50 chr14 51308426 51308684 + 3 NA intron (NR_145423, intron 1 of 1) intron (NR_145423, intron 1 of 1) 19830 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 467-85 chr14 81963861 81964080 + 3 NA Intergenic Intergenic -220832 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 477-117 chr17 54595693 54595904 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -304893 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 466-140 chr2 126757056 126757237 + 3 NA Intergenic Intergenic 100988 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 317-195 chr18 6514822 6515060 + 3 NA intron (NR_120518, intron 2 of 5) L1MB2|LINE|L1 3525 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 193-196 chr8 99096101 99096209 + 3 NA intron (NR_047582, intron 4 of 8) intron (NR_047582, intron 4 of 8) 82889 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 593-165 chr9 93763616 93763908 + 3 NA Intergenic L1MC1|LINE|L1 -55595 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 492-187 chr4 57815602 57815919 + 3 NA Intergenic Intergenic 389888 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 659-92 chr5 99794114 99794518 + 3 NA Intergenic Intergenic 260326 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 588-66 chr2 35822861 35823225 + 3 NA Intergenic Intergenic 351638 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 439-4 chr1 59265927 59266176 + 3 NA Intergenic Intergenic -30762 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 737-69 chr5 122143542 122143953 + 3 NA intron (NM_207317, intron 1 of 1) intron (NM_207317, intron 1 of 1) 14201 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 315-183 chr17 11412343 11412490 + 3 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) 170993 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 717-83 chr8 91731456 91731818 + 3 NA Intergenic Intergenic 286043 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 475-209 chr4 109310698 109310922 + 3 NA intron (NR_160939, intron 1 of 2) MER4D1|LTR|ERV1 7775 NR_160939 645078 Hs.518784 NM_001039778 ZCCHC23 - zinc finger CCHC-type containing 23 ncRNA 572-14 chr1 237611826 237612205 + 3 NA intron (NM_001035, intron 36 of 104) L1MB8|LINE|L1 140896 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 472-191 chr21 16024853 16025052 + 3 NA Intergenic Intergenic -45536 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 317-362 chr4 100341619 100341766 + 3 NA Intergenic Intergenic 53555 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 694-130 chr8 119313464 119313857 + 3 NA Intergenic L1MA8|LINE|L1 -11511 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 604-128 chr5 28765306 28765739 + 3 NA Intergenic L2|LINE|L2 -161348 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 563-206 chrY 11295617 11295915 + 3 NA Intergenic Intergenic 1125824 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 884-18 chr2 57147889 57148241 + 3 NA Intergenic L1PA10|LINE|L1 -759586 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 937-6 chr13 58703993 58704383 + 3 NA Intergenic L1MDa|LINE|L1 -471071 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 803-22 chr2 15510688 15511005 + 3 NA intron (NR_052013, intron 10 of 50) MIR|SINE|MIR 50488 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 497-261 chr7 50248683 50248945 + 3 NA Intergenic L1MEd|LINE|L1 -55250 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 330-262 chr2 59416802 59416961 + 3 NA Intergenic Intergenic 199173 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 998-15 chr5 117493005 117493632 + 3 NA intron (NR_046089, intron 3 of 5) intron (NR_046089, intron 3 of 5) 77806 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 398-325 chr7 54901660 54901865 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -117255 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 858-2 chr1 239146703 239147077 + 3 NA Intergenic Intergenic -239678 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 452-115 chr19 36927413 36927802 + 3 NA intron (NM_001204835, intron 4 of 6) L1M5|LINE|L1 11275 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 490-304 chr8 129777654 129777918 + 3 NA intron (NM_031415, intron 1 of 13) FLAM_A|SINE|Alu 8838 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 534-204 chr5 131338787 131339029 + 3 NA intron (NM_020240, intron 2 of 5) L1ME1|LINE|L1 74899 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 411-174 chr3 20792756 20792917 + 3 NA Intergenic Intergenic 450368 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 671-2 chr1 41594378 41594855 + 3 NA intron (NM_024503, intron 3 of 8) intron (NM_024503, intron 3 of 8) -109933 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 541-200 chr6 40005118 40005442 + 3 NA Intergenic L1ME3F|LINE|L1 -70818 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 987-15 chr6 141041953 141042431 + 3 NA Intergenic MER61C|LTR|ERV1 358378 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 549-5 chr1 75438617 75438932 + 3 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 172340 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 372-131 chr13 83540568 83540724 + 3 NA Intergenic Intergenic 341747 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 372-518 chr9 98416410 98416609 + 3 NA intron (NM_005458, intron 7 of 18) LTR33A|LTR|ERVL -160860 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 493-308 chr8 142355722 142355988 + 3 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 47327 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 561-79 chr16 66413984 66414260 + 3 NA Intergenic L1ME1|LINE|L1 5598 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 283-155 chr16 8355478 8355642 + 3 NA Intergenic Intergenic 234278 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 368-46 chr10 30286194 30286401 + 3 NA Intergenic Intergenic 63041 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 1060 chr10 41727670 41728338 + 3 NA Intergenic ALR/Alpha|Satellite|centr 640041 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 452-49 chr11 123991924 123992199 + 3 NA Intergenic Intergenic 3100 NM_001355219 79490 NM_001355219 ENSG00000198674 OR10G6 OR10G6P|OR10G6Q olfactory receptor family 10 subfamily G member 6 protein-coding 643-114 chr7 43380834 43381194 + 3 NA intron (NM_001287059, intron 5 of 27) L1ME3A|LINE|L1 141528 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 473-180 chr3 117814245 117814414 + 3 NA Intergenic Intergenic -123404 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 532-216 chr5 166788225 166788611 + 3 NA Intergenic Intergenic 137952 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 375-15 chr1 107196722 107196915 + 3 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 48749 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 453-293 chr8 135057359 135057630 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -176637 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 324-192 chr15 96841781 96841957 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 58434 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 512-9 chr1 159276746 159277022 + 3 NA Intergenic Intergenic -12830 NM_002001 2205 Hs.897 NM_002001 ENSG00000179639 FCER1A FCE1A|FcERI Fc fragment of IgE receptor Ia protein-coding 846-51 chr6 119288696 119289113 + 3 NA intron (NM_005907, intron 5 of 12) intron (NM_005907, intron 5 of 12) 60857 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 330-422 chr5 65958991 65959156 + 3 NA intron (NM_001253697, intron 1 of 25) L1ME3G|LINE|L1 -13500 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 393-144 chr18 33809627 33809806 + 3 NA Intergenic L1MCa|LINE|L1 231497 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 443-221 chr4 57402422 57402769 + 3 NA Intergenic MIR|SINE|MIR -23277 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 478-79 chr14 56194991 56195276 + 3 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 76722 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 605-74 chr3 37587720 37588076 + 3 NA intron (NM_002207, intron 15 of 27) intron (NM_002207, intron 15 of 27) 135757 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 433-288 chr8 128437832 128438030 + 3 NA intron (NR_121672, intron 2 of 7) MIR|SINE|MIR 126748 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 819-23 chr4 43804920 43805455 + 3 NA Intergenic Intergenic -211674 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 350-254 chr2 160823436 160823575 + 3 NA Intergenic L1MA5|LINE|L1 -313450 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 721-65 chr4 66068613 66069114 + 3 NA Intergenic L1MA9|LINE|L1 -207961 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 416-288 chr6 11370460 11370663 + 3 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 11787 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 443-32 chr10 9909221 9909451 + 3 NA Intergenic Intergenic -149386 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 810-31 chr3 3402839 3403301 + 3 NA Intergenic L1M1|LINE|L1 -223353 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 529-96 chr2 16783501 16783691 + 3 NA Intergenic Intergenic -117762 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 584-19 chr10 66418456 66418827 + 3 NA intron (NM_001127384, intron 11 of 17) L1MA4A|LINE|L1 -507395 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 429-126 chr18 27261823 27262004 + 3 NA Intergenic L1MB7|LINE|L1 -76605 NM_031422 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 612-136 chr8 14069605 14070052 + 3 NA Intergenic L1M3c|LINE|L1 440138 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 600-22 chr11 81873279 81873548 + 3 NA Intergenic Intergenic 17423 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 506-34 chr10 32868054 32868385 + 3 NA intron (NM_001321115, intron 42 of 43) L1MB3|LINE|L1 33253 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 488-216 chr5 86136481 86136724 + 3 NA Intergenic Intergenic -145842 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 690-66 chr20 59305564 59305892 + 3 NA intron (NM_207032, intron 2 of 4) MLT2D|LTR|ERVL 5117 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 407-355 chrX 70819445 70819711 + 3 NA intron (NM_001003811, intron 9 of 30) L1MA9|LINE|L1 26717 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 560-171 chr7 46436280 46436602 + 3 NA Intergenic L1MCa|LINE|L1 260681 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 706-15 chr12 7486754 7487052 + 3 NA exon (NM_004244, exon 9 of 17) exon (NM_004244, exon 9 of 17) 16874 NR_163255 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 304-190 chr17 40413517 40413627 + 3 NA exon (NM_001067, exon 5 of 35) exon (NM_001067, exon 5 of 35) 4324 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A DNA topoisomerase II alpha protein-coding 643-38 chr15 65026557 65026927 + 3 NA intron (NM_139242, intron 2 of 8) intron (NM_139242, intron 2 of 8) 2897 NM_139242 123263 Hs.531615 NM_139242 ENSG00000103707 MTFMT COXPD15|FMT1|MC1DN27 mitochondrial methionyl-tRNA formyltransferase protein-coding 543-182 chr4 61209887 61210240 + 3 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 7891 NM_001371342 552-168 chr5 16490716 16490973 + 3 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) 18154 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 524-27 chr10 39231456 39231771 + 3 NA Intergenic ALR/Alpha|Satellite|centr 535017 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 777-17 chr12 62460054 62460382 + 3 NA Intergenic L2c|LINE|L2 -6608 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 356-355 chr4 40724942 40725085 + 3 NA Intergenic MIRb|SINE|MIR -24942 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 560-176 chr8 17817641 17818010 + 3 NA Intergenic AluJb|SINE|Alu -16246 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 661-67 chr3 88193750 88194120 + 3 NA Intergenic MER4A1_|LTR|ERV1 43976 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 564-148 chr5 7144155 7144458 + 3 NA Intergenic Intergenic 125048 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 407-288 chr7 34537517 34537689 + 3 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -120615 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 946-20 chr5 8491937 8492488 + 3 NA Intergenic Intergenic 31287 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 730-85 chr9 81429056 81429432 + 3 NA Intergenic Intergenic 260291 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 505-20 chr1 192396587 192396781 + 3 NA Intergenic Intergenic 79692 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 527-266 chr8 95877408 95877727 + 3 NA Intergenic L1PA13|LINE|L1 70781 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 430-123 chr18 53133295 53133495 + 3 NA intron (NM_005215, intron 7 of 28) LTR88c|LTR|Gypsy? -103706 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 331-179 chr15 97288206 97288456 + 3 NA Intergenic Intergenic 233480 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 840-36 chr4 14227455 14227798 + 3 NA Intergenic Intergenic 115658 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 515-38 chr11 30940045 30940299 + 3 NA intron (NM_001367979, intron 21 of 38) LOR1a|LTR|ERV1 52514 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 314-303 chr2 125072743 125072857 + 3 NA Intergenic L1MB7|LINE|L1 1045185 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 283-250 chr2 193348458 193348604 + 3 NA Intergenic Intergenic 598686 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 544-5 chr1 43494030 43494226 + 3 NA Intergenic L1MEb|LINE|L1 -31909 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 345-395 chr4 122989060 122989224 + 3 NA intron (NM_001317799, intron 10 of 10) L1MA9|LINE|L1 66064 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 1248-5 chr3 98273019 98273949 + 3 NA Intergenic MER34B-int|LTR|ERV1 9240 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 394-203 chr20 53302343 53302527 + 3 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 117152 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 377-164 chr17 78847189 78847358 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -6746 NM_001321291 57602 Hs.464243 NM_025090 ENSG00000055483 USP36 DUB1 ubiquitin specific peptidase 36 protein-coding 445-211 chr4 164766870 164767198 + 3 NA intron (NM_001352885, intron 1 of 2) L2a|LINE|L2 12903 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 589-2 chr1 81642444 81642732 + 3 NA intron (NM_001366008, intron 3 of 26) L1MCa|LINE|L1 -57182 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 593-60 chr17 54728388 54728727 + 3 NA Intergenic L1PA15|LINE|L1 -172134 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 456-273 chr6 34494987 34495311 + 3 NA intron (NM_020804, intron 1 of 9) intron (NM_020804, intron 1 of 9) -19723 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 471-196 chr4 106013439 106013695 + 3 NA intron (NR_125928, intron 3 of 3) L1MEc|LINE|L1 8911 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 316-140 chr12 104415054 104415179 + 3 NA Intergenic LTR82A|LTR|ERVL -41832 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 401-78 chr13 83944890 83945097 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -62519 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 589-154 chr8 72378508 72378781 + 3 NA Intergenic L1PA15-16|LINE|L1 -127010 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 592-75 chr19 31261470 31261881 + 3 NA intron (NR_138036, intron 1 of 4) intron (NR_138036, intron 1 of 4) 87761 NM_020856 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 547-253 chr8 132976019 132976282 + 3 NA intron (NM_003235, intron 34 of 47) intron (NM_003235, intron 34 of 47) 70431 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 472-245 chr5 44038164 44038359 + 3 NA Intergenic L1PA11|LINE|L1 -350471 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 540-139 chr3 20636129 20636408 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 293800 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 243-91 chr12 40636992 40637128 + 3 NA Intergenic Intergenic -55379 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 516-75 chr14 95752364 95752650 + 3 NA intron (NR_148060, intron 2 of 2) (AT)n|Simple_repeat|Simple_repeat 37024 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 462-198 chr4 41530140 41530399 + 3 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -7888 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 805-30 chr3 105971279 105971823 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -102150 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 477-276 chr8 70961530 70961728 + 3 NA Intergenic Intergenic 292290 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 878-45 chr7 113481017 113481583 + 3 NA Intergenic L1MC4|LINE|L1 -362718 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 674-29 chr14 62353408 62353769 + 3 NA Intergenic L1PA4|LINE|L1 -213615 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 779-52 chr8 54985457 54985974 + 3 NA Intergenic L1M4|LINE|L1 -116313 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 503-194 chr3 70174234 70174557 + 3 NA Intergenic Intergenic 138243 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 200-33 chr10 58620116 58620243 + 3 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) -94836 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 370-111 chr12 41010105 41010354 + 3 NA intron (NM_001843, intron 17 of 23) HUERS-P3-int|LTR|ERV1 101872 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 381-260 chr3 175644525 175644683 + 3 NA intron (NM_207015, intron 11 of 13) L1ME3D|LINE|L1 131729 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 496-262 chr7 53964213 53964531 + 3 NA Intergenic MER34A1|LTR|ERV1 -152441 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 439-212 chr4 104245581 104245833 + 3 NA Intergenic L1PA15|LINE|L1 -245258 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 603-116 chr3 191803420 191803764 + 3 NA Intergenic L1MB3|LINE|L1 342429 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 627-77 chr4 32721011 32721309 + 3 NA Intergenic Intergenic 370122 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 774-31 chr17 12883263 12883588 + 3 NA intron (NM_001321164, intron 1 of 20) L1ME3F|LINE|L1 33917 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 487-250 chr6 110030513 110030759 + 3 NA Intergenic L1ME2|LINE|L1 52325 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 573-44 chr11 112439436 112439694 + 3 NA Intergenic L1M1|LINE|L1 -42667 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 491-198 chr4 188797754 188798059 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 21249 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 510-240 chr6 5207272 5207443 + 3 NA intron (NM_001164840, intron 2 of 2) intron (NM_001164840, intron 2 of 2) 53593 NR_104417 57128 Hs.387755 NM_020408 ENSG00000214113 LYRM4 C6orf149|CGI-203|COXPD19|ISD11 LYR motif containing 4 protein-coding 268-264 chr3 192112305 192112483 + 3 NA Intergenic Intergenic -126236 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 843-32 chr4 79774809 79775368 + 3 NA Intergenic L1PB1|LINE|L1 -52383 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 412-138 chr19 16934395 16934557 + 3 NA intron (NM_015692, intron 23 of 41) intron (NM_015692, intron 23 of 41) -37529 NR_147452 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 448-298 chr9 80054372 80054537 + 3 NA Intergenic L1MA9|LINE|L1 79431 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 342-138 chr14 21336617 21336744 + 3 NA intron (NM_020366, intron 20 of 23) intron (NM_020366, intron 20 of 23) 47339 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 405-175 chr20 8683023 8683170 + 3 NA intron (NM_182734, intron 9 of 32) intron (NM_182734, intron 9 of 32) -148089 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 417-264 chr7 62659943 62660110 + 3 NA Intergenic ALR/Alpha|Satellite|centr 644030 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1220-5 chr22 27283220 27283777 + 3 NA Intergenic Intergenic -27153 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 267-454 chrX 23478753 23478868 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 143961 NM_173495 139411 Hs.319503 NM_173495 ENSG00000165186 PTCHD1 AUTSX4 patched domain containing 1 protein-coding 612-142 chr8 99049472 99049710 + 3 NA intron (NM_017890, intron 3 of 61) L1PB1|LINE|L1 36325 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 357-174 chr18 61920714 61920934 + 3 NA Intergenic AluJo|SINE|Alu -27817 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 250-347 chr5 72454867 72455040 + 3 NA intron (NM_152625, intron 3 of 4) MER45A|DNA|hAT-Tip100 52457 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 474-2 chr1 38397602 38397837 + 3 NA Intergenic L1M1|LINE|L1 -77477 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 527-22 chr10 25523485 25523788 + 3 NA intron (NM_020752, intron 5 of 10) L1MB8|LINE|L1 -128076 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 672-86 chr5 10901465 10901824 + 3 NA Intergenic MER4CL34|LTR|ERV1 -140410 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 535-220 chr6 169687667 169688007 + 3 NA intron (NM_182552, intron 2 of 25) MER8|DNA|TcMar-Tigger 14192 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 1064-13 chr4 65805162 65805973 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -135072 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 963-30 chr8 54609860 54610443 + 3 NA Intergenic L2a|LINE|L2 -5945 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 540-210 chr8 100852241 100852453 + 3 NA Intergenic L1PA4|LINE|L1 98224 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 489-233 chr6 148431194 148431392 + 3 NA intron (NM_001346506, intron 2 of 20) AluSx1|SINE|Alu -77206 NM_001346508 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 671-8 chr1 175264052 175264353 + 3 NA Intergenic HAL1|LINE|L1 -71215 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 654-68 chr2 107542718 107543009 + 3 NA intron (NR_146968, intron 2 of 2) intron (NR_146968, intron 2 of 2) 13444 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 855-19 chr17 33654065 33654580 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -120562 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 342-256 chr2 140046136 140046317 + 3 NA Intergenic L1ME3G|LINE|L1 540459 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 1014-4 chr11 32635358 32635995 + 3 NA intron (NM_001008391, intron 14 of 17) intron (NM_001008391, intron 14 of 17) 51845 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 1178-3 chr14 59641866 59642563 + 3 NA intron (NM_021136, intron 3 of 8) L1MEg|LINE|L1 4806 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 451-171 chr5 8500770 8501139 + 3 NA Intergenic Intergenic 40029 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 422-283 chr7 53313474 53313683 + 3 NA Intergenic Intergenic 277945 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 736-50 chr22 34980400 34980812 + 3 NA intron (NR_138042, intron 1 of 4) L1MA8|LINE|L1 17310 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 407-185 chr3 4972432 4972660 + 3 NA intron (NR_125915, intron 1 of 3) L1ME2|LINE|L1 -6891 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 383-175 chr2 8349574 8349848 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -21292 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 345-168 chr15 34700050 34700206 + 3 NA Intergenic Intergenic -44364 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 479-173 chr4 168216232 168216515 + 3 NA TTS (NM_017631) TTS (NM_017631) 102379 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 365-68 chr11 27764480 27764647 + 3 NA Intergenic L2|LINE|L2 -42533 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 480-185 chr3 28372706 28372929 + 3 NA intron (NM_001324170, intron 1 of 6) L1PB3|LINE|L1 23668 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 627-82 chr4 124820757 124821125 + 3 NA Intergenic L1MA9|LINE|L1 -108209 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 449-255 chr7 49176812 49177034 + 3 NA Intergenic Intergenic 252376 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 801-23 chr18 7335251 7335677 + 3 NA Intergenic Intergenic 104360 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 788-29 chr2 50229864 50230426 + 3 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 117609 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 611-57 chr17 3368967 3369204 + 3 NA Intergenic L1PB1|LINE|L1 29325 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 564-100 chr2 57971780 57972119 + 3 NA intron (NM_001288838, intron 1 of 15) L1MC5|LINE|L1 64298 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 385-99 chr14 66131929 66132078 + 3 NA Intergenic Intergenic -354368 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 796-18 chr14 82106668 82107207 + 3 NA Intergenic Intergenic -363799 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 227-327 chr6 151651716 151651872 + 3 NA Intergenic MIRb|SINE|MIR -38702 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 377-157 chr17 53728416 53728684 + 3 NA Intergenic L1MA6|LINE|L1 -94377 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 292-89 chr12 4199303 4199438 + 3 NA Intergenic Intergenic -74392 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 712-50 chr2 211956652 211957080 + 3 NA intron (NM_001042599, intron 2 of 26) AluJr|SINE|Alu 469494 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 409-217 chr4 34888553 34888759 + 3 NA Intergenic L1PA16|LINE|L1 -618909 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 512-91 chr15 95701656 95701916 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 268693 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 620-91 chr3 89735689 89735976 + 3 NA Intergenic Intergenic 628211 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 416-115 chr14 40325231 40325478 + 3 NA Intergenic L1MC1|LINE|L1 -629357 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 570-23 chr10 18865931 18866438 + 3 NA Intergenic Intergenic -182617 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 496-67 chr13 83923057 83923324 + 3 NA Intergenic Tigger15a|DNA|TcMar-Tigger -40716 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 354-284 chr3 18850876 18851037 + 3 NA Intergenic L1MC4|LINE|L1 -297554 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 593-162 chr9 81419285 81419650 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 270068 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 720-18 chr11 98056887 98057248 + 3 NA Intergenic LTR40a|LTR|ERVL -963882 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 696-21 chr11 68663473 68663876 + 3 NA Intergenic Intergenic -20870 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 613-117 chr6 88076729 88077085 + 3 NA Intergenic Intergenic 29066 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 472-315 chr8 89503438 89503657 + 3 NA Intergenic L1PA16|LINE|L1 254164 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 536-255 chrX 50147068 50147354 + 3 NA Intergenic AluJb|SINE|Alu 53161 NM_139289 8852 Hs.97633 NM_003886 ENSG00000147081 AKAP4 AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82 A-kinase anchoring protein 4 protein-coding 521-94 chr15 80815323 80815606 + 3 NA intron (NM_018689, intron 1 of 28) MIRb|SINE|MIR 26609 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 357-441 chr8 83520195 83520398 + 3 NA Intergenic Intergenic 116538 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 1144-7 chr3 188807354 188807941 + 3 NA intron (NM_001167672, intron 7 of 9) L1MCc|LINE|L1 118866 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 632-119 chr8 87786485 87786793 + 3 NA Intergenic Intergenic 87376 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 504-123 chr2 57387371 57387686 + 3 NA Intergenic L1M1|LINE|L1 -520123 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 1135-4 chr2 43832335 43832915 + 3 NA intron (NM_022436, intron 2 of 12) MER5A1|DNA|hAT-Charlie 6214 NM_022436 64240 Hs.132992 NM_022436 ENSG00000138075 ABCG5 STSL ATP binding cassette subfamily G member 5 protein-coding 667-90 chr5 121228225 121228621 + 3 NA Intergenic L1PA16|LINE|L1 -94127 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 584-182 chr9 113849013 113849340 + 3 NA Intergenic L1M4a1|LINE|L1 -27106 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 607-33 chr12 119578184 119578490 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -15437 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 688-102 chr7 118229142 118229485 + 3 NA intron (NM_019644, intron 1 of 6) L2a|LINE|L2 4609 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 357-387 chr6 65002408 65002665 + 3 NA intron (NM_001292009, intron 13 of 43) intron (NM_001292009, intron 13 of 43) -298882 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 327-483 chr8 53636247 53636489 + 3 NA Intergenic MLT2D|LTR|ERVL -112403 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 333-157 chr14 83772039 83772214 + 3 NA Intergenic Intergenic 1129494 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 522-29 chr10 90665498 90665753 + 3 NA Intergenic L1M5|LINE|L1 -124820 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 367-392 chr6 65623375 65623532 + 3 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -43649 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 412-354 chrX 94907765 94907902 + 3 NA Intergenic Intergenic 155393 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 500-81 chr14 56921825 56922112 + 3 NA intron (NR_029385, intron 3 of 3) MSTC-int|LTR|ERVL-MaLR 108810 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 406-312 chr9 71143872 71144092 + 3 NA intron (NM_001366143, intron 1 of 25) L1PA13|LINE|L1 -22361 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 445-40 chr11 109378721 109378952 + 3 NA Intergenic Intergenic -43354 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 407-180 chr22 33692533 33692835 + 3 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) 12236 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 341-32 chr1 171022877 171023060 + 3 NA intron (NM_001163629, intron 17 of 21) intron (NM_001163629, intron 17 of 21) -67937 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 312-154 chr14 78289062 78289193 + 3 NA intron (NM_001366425, intron 3 of 19) intron (NM_001366425, intron 3 of 19) -114592 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 488-107 chr17 61188814 61188979 + 3 NA intron (NM_001330413, intron 23 of 25) AluJb|SINE|Alu 178808 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 591-120 chr5 6079736 6080054 + 3 NA Intergenic L1MB5|LINE|L1 257397 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 469-231 chr5 161471983 161472303 + 3 NA intron (NM_000813, intron 4 of 9) MIR|SINE|MIR 75981 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 266-235 chr3 20656954 20657089 + 3 NA Intergenic L1ME3G|LINE|L1 314553 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 496-15 chr1 113831829 113832156 + 3 NA intron (NM_012411, intron 14 of 18) MIRb|SINE|MIR 19380 NR_125965 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 378-286 chr3 83697576 83697772 + 3 NA Intergenic L1MA8|LINE|L1 1171901 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 468-137 chr2 35854171 35854328 + 3 NA Intergenic Intergenic 382844 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 720-90 chr8 122503993 122504276 + 3 NA intron (NR_131202, intron 2 of 3) MIR3|SINE|MIR 64510 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 460-114 chr18 6265204 6265400 + 3 NA intron (NM_001365769, intron 4 of 16) L1ME4a|LINE|L1 8558 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 436-38 chr10 78957061 78957218 + 3 NA intron (NR_024429, intron 6 of 7) intron (NR_024429, intron 6 of 7) 110309 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 815-33 chr3 78245777 78246264 + 3 NA Intergenic MIR3|SINE|MIR -197057 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 325-341 chr3 30764606 30764828 + 3 NA intron (NM_207359, intron 14 of 14) intron (NM_207359, intron 14 of 14) 129944 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 422-57 chr12 23587607 23587858 + 3 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) -3146 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 772-62 chr9 82476296 82476766 + 3 NA Intergenic Intergenic 487759 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 552-39 chr12 11804209 11804466 + 3 NA intron (NM_001987, intron 2 of 7) L2a|LINE|L2 154483 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 1443-5 chr4 132988849 132989721 + 3 NA Intergenic AluSz|SINE|Alu 159831 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 646-139 chrX 65473995 65474374 + 3 NA Intergenic L1MA6|LINE|L1 -14551 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 867-14 chr14 81731262 81731863 + 3 NA Intergenic Intergenic 11576 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 302-455 chr8 92689735 92689892 + 3 NA Intergenic L1MB7|LINE|L1 -34319 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 435-245 chr8 101368007 101368203 + 3 NA promoter-TSS (NR_002182) promoter-TSS (NR_002182) -788 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 471-69 chr12 97087407 97087565 + 3 NA Intergenic Intergenic 180020 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 463-182 chr3 39844723 39844911 + 3 NA intron (NM_001284424, intron 1 of 15) ERVL-E-int|LTR|ERVL 35157 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 428-18 chr1 197090673 197090851 + 3 NA intron (NM_001206846, intron 22 of 26) intron (NM_001206846, intron 22 of 26) -23495 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 259-335 chr6 4650906 4651057 + 3 NA Intergenic L1ME2|LINE|L1 40416 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 825-30 chr3 45301497 45302064 + 3 NA Intergenic L1M4b|LINE|L1 -75493 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 514-176 chr22 48181447 48181791 + 3 NA Intergenic Intergenic -92745 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 498-227 chr5 167175488 167175788 + 3 NA intron (NM_001122679, intron 1 of 29) L2c|LINE|L2 -7237 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 406-171 chr20 53292498 53292732 + 3 NA intron (NM_173485, intron 2 of 2) AluJr|SINE|Alu 107332 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 434-248 chr6 88675801 88676059 + 3 NA intron (NM_001286428, intron 12 of 13) L1MB7|LINE|L1 -136561 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 349-487 chr8 10749939 10750155 + 3 NA intron (NR_146188, intron 1 of 2) L1MB3|LINE|L1 -19536 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box transcription factor 7 protein-coding 579-169 chr8 101860551 101860790 + 3 NA intron (NM_001040628, intron 4 of 7) HAL1|LINE|L1 -69701 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 449-13 chr1 180743650 180743851 + 3 NA intron (NR_137330, intron 2 of 12) L1MEf|LINE|L1 111728 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 530-176 chr4 60390120 60390393 + 3 NA Intergenic Intergenic -532363 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 790-51 chr7 114488290 114488780 + 3 NA intron (NR_033767, intron 2 of 17) intron (NR_033767, intron 2 of 17) 62033 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 337-330 chr22 47180624 47180796 + 3 NA Intergenic L1MEi|LINE|L1 -164861 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 321-613 chrX 72399852 72399987 + 3 NA intron (NR_051952, intron 8 of 9) L2-3_Crp|LINE|L2 -92762 NM_001144886 4435 Hs.40403 NM_004143 ENSG00000125931 CITED1 MSG1 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 1 protein-coding 1013-18 chr8 99314789 99315478 + 3 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 221597 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 793-12 chr12 97187931 97188382 + 3 NA Intergenic L1PA17|LINE|L1 -274620 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 529-130 chr20 28814115 28814393 + 3 NA Intergenic ALR/Alpha|Satellite|centr -211589 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 340-8 chr1 45111661 45111891 + 3 NA intron (NM_020883, intron 1 of 13) MLT1D|LTR|ERVL-MaLR 94829 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 436-58 chr12 10012972 10013167 + 3 NA intron (NM_001319241, intron 2 of 5) intron (NM_001319241, intron 2 of 5) 2442 NM_001129998 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 302-452 chr8 86301369 86301538 + 3 NA Intergenic Intergenic -41094 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 537-262 chr8 127405002 127405316 + 3 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) 4760 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 771-87 chr8 137993173 137993615 + 3 NA intron (NR_161374, intron 2 of 7) L1PA15|LINE|L1 90151 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 393-27 chr1 216051811 216052126 + 3 NA intron (NM_206933, intron 30 of 71) intron (NM_206933, intron 30 of 71) -20497 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 432-98 chr16 73926114 73926307 + 3 NA Intergenic L1MDa|LINE|L1 289311 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 668-108 chr8 132350324 132350718 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 96741 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 435-140 chr20 52733021 52733266 + 3 NA Intergenic Intergenic 112305 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 454-210 chr3 118725932 118726198 + 3 NA intron (NR_135547, intron 1 of 3) L1MEd|LINE|L1 84297 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 448-131 chr2 175342523 175342798 + 3 NA Intergenic AluJb|SINE|Alu -160950 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 852-30 chr20 52246228 52246682 + 3 NA Intergenic Intergenic -54470 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 522-159 chr20 43829908 43830082 + 3 NA Intergenic Intergenic -64723 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 535-64 chr13 47377919 47378226 + 3 NA Intergenic L1MC|LINE|L1 -480996 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 532-24 chr10 81971499 81971803 + 3 NA intron (NR_163253, intron 2 of 10) L1MEc|LINE|L1 93964 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 248-412 chr8 119179972 119180103 + 3 NA Intergenic L1MB8|LINE|L1 -28326 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 672 chr1 14160218 14160537 + 3 NA Intergenic L1MA2|LINE|L1 259596 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 534-273 chr9 29434701 29434946 + 3 NA Intergenic AluJr4|SINE|Alu -221222 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 546-154 chr3 136798634 136798845 + 3 NA Intergenic AluSz|SINE|Alu -20280 NM_001097599 80723 Hs.477692 NM_025246 ENSG00000168917 SLC35G2 TMEM22 solute carrier family 35 member G2 protein-coding 245-296 chr6 36132133 36132305 + 3 NA intron (NR_072996, intron 2 of 9) intron (NR_072996, intron 2 of 9) 1706 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 405-343 chr9 80932677 80932974 + 3 NA Intergenic Intergenic 756710 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 358-80 chr11 107589533 107589700 + 3 NA Intergenic Intergenic -1475 NM_001130037 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 614-103 chr5 109110865 109111164 + 3 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 186408 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 549-39 chr11 104807714 104808034 + 3 NA Intergenic Intergenic 90796 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 540-134 chr22 26334065 26334297 + 3 NA intron (NM_001184776, intron 9 of 14) L1MB5|LINE|L1 -95079 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 639-25 chr12 15085876 15086235 + 3 NA Intergenic MIRb|SINE|MIR -65868 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 552-190 chr6 115692742 115693065 + 3 NA Intergenic L2c|LINE|L2 -49068 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 470-137 chr2 143965785 143966053 + 3 NA intron (NR_148872, intron 7 of 10) intron (NR_148872, intron 7 of 10) 28852 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 483-10 chr1 102085813 102086029 + 3 NA Intergenic LTR10B2|LTR|ERV1 -88687 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 445-258 chr7 86055624 86055802 + 3 NA Intergenic L1PA15-16|LINE|L1 -588196 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 571-4 chr1 153328384 153328703 + 3 NA Intergenic L1MC5|LINE|L1 -17825 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 491-223 chr6 35541329 35541644 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -28590 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 581-182 chr9 38367609 38367847 + 3 NA Intergenic MER45R|DNA|hAT-Tip100 -24974 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 1702 chr10 17280725 17281921 + 3 NA Intergenic MLT2B2|LTR|ERVL -51338 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 436-191 chr3 112865053 112865222 + 3 NA Intergenic L1MA4A|LINE|L1 -19187 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 421-124 chr2 6540970 6541114 + 3 NA Intergenic Intergenic 92745 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 911-15 chr2 240077765 240078339 + 3 NA Intergenic L1MEi|LINE|L1 -31980 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 675-77 chr5 178332713 178333133 + 3 NA intron (NM_173465, intron 2 of 28) Charlie8|DNA|hAT-Charlie -100101 NR_103510 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 676-20 chr11 94327876 94328126 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 22364 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 491-79 chr15 70614588 70614781 + 3 NA promoter-TSS (NR_126481) promoter-TSS (NR_126481) -863 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 636-71 chr2 60151826 60152137 + 3 NA Intergenic Intergenic 231055 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 500-265 chr7 41516585 41516907 + 3 NA Intergenic L2a|LINE|L2 -177173 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 390-376 chr8 74422016 74422193 + 3 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) 71701 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 498-149 chr20 9002289 9002561 + 3 NA Intergenic Intergenic -66629 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 501-206 chr5 38623086 38623277 + 3 NA intron (NR_103554, intron 2 of 8) intron (NR_103554, intron 2 of 8) -27776 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 801-60 chr8 120876291 120876693 + 3 NA Intergenic L1MA7|LINE|L1 -64446 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 593-155 chr8 128085828 128086228 + 3 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 36876 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 379-43 chr10 66739871 66740109 + 3 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -186046 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 474-169 chr20 46500513 46500703 + 3 NA 3' UTR (NM_001353824, exon 5 of 5) 3' UTR (NM_001353824, exon 5 of 5) 12964 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 1049 chr1 210279422 210279857 + 3 NA Intergenic LTR59|LTR|ERV1 -45754 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 648-124 chr6 27456636 27456999 + 3 NA intron (NM_001347832, intron 5 of 5) intron (NM_001347832, intron 5 of 5) 16081 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 458-117 chr19 56684122 56684333 + 3 NA Intergenic Intergenic -12470 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 395-109 chr15 80303811 80304020 + 3 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 37890 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 506-90 chr14 78872321 78872618 + 3 NA intron (NM_004796, intron 7 of 16) HAL1|LINE|L1 -327513 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 1228-11 chrX 56628582 56629271 + 3 NA Intergenic L1PA14|LINE|L1 65333 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 353-387 chr4 115255564 115255734 + 3 NA Intergenic Intergenic -142029 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 715-56 chr4 19295080 19295445 + 3 NA Intergenic Intergenic -956643 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 814-41 chr3 127191889 127192437 + 3 NA promoter-TSS (NM_001007534) promoter-TSS (NM_001007534) -968 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 848-27 chr20 46526612 46526973 + 3 NA Intergenic AluSx1|SINE|Alu -13220 NM_001270497 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 256-308 chr5 18340879 18340994 + 3 NA Intergenic Intergenic 533662 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 595-26 chr11 15236979 15237266 + 3 NA intron (NM_001042536, intron 10 of 12) L2b|LINE|L2 88020 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 497-187 chr3 171927411 171927653 + 3 NA Intergenic Intergenic -26792 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 391-269 chr4 138213844 138214108 + 3 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 28373 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 393-333 chr7 79769628 79769793 + 3 NA Intergenic Intergenic 315750 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 363-319 chr4 43609163 43609363 + 3 NA Intergenic Intergenic -116720 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 477-191 chr3 8344282 8344592 + 3 NA intron (NR_033378, intron 3 of 3) L1MA5A|LINE|L1 157221 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 492-63 chr12 75241413 75241719 + 3 NA intron (NR_149000, intron 1 of 1) intron (NR_149000, intron 1 of 1) 6826 NR_149000 100130268 Hs.524596 NR_149000 ENSG00000254451 LOC100130268 - uncharacterized LOC100130268 ncRNA 358-288 chr3 6417025 6417322 + 3 NA Intergenic Intergenic 388276 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 901-21 chr4 32631748 32632437 + 3 NA Intergenic Intergenic 281054 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 603-122 chr4 70104511 70104804 + 3 NA Intergenic L1MA8|LINE|L1 -28947 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 451-188 chr5 150950933 150951321 + 3 NA Intergenic Intergenic -4543 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 515-70 chr14 66863619 66863899 + 3 NA intron (NM_001024218, intron 4 of 21) L1MA2|LINE|L1 -325681 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 516-141 chr2 189381075 189381367 + 3 NA Intergenic L1M6|LINE|L1 -60212 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 486-293 chr8 84279113 84279460 + 3 NA intron (NM_001354320, intron 2 of 9) THE1B|LTR|ERVL-MaLR 94620 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 521-25 chr10 21457056 21457372 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 39427 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 466-292 chr9 82501125 82501316 + 3 NA Intergenic L1ME3|LINE|L1 512448 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 639-74 chr20 51330051 51330383 + 3 NA Intergenic (GATA)n|Simple_repeat|Simple_repeat 122760 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 409-48 chr12 28315977 28316221 + 3 NA intron (NM_001352084, intron 6 of 11) HAL1M8|LINE|L1 -125361 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 828-48 chr8 33295858 33296350 + 3 NA Intergenic Intergenic 177042 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 655-13 chr1 210211778 210212046 + 3 NA Intergenic Intergenic -20884 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 497-185 chr3 132830884 132831076 + 3 NA intron (NR_002811, intron 9 of 10) intron (NR_002811, intron 9 of 10) -108521 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 481-324 chrX 81403554 81403737 + 3 NA Intergenic Intergenic 201543 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 406-234 chr5 95867003 95867156 + 3 NA Intergenic Intergenic 14847 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 483-129 chr2 166730582 166730813 + 3 NA Intergenic Intergenic -157790 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 409-20 chr10 32477968 32478211 + 3 NA intron (NR_109826, intron 9 of 16) L1MC2|LINE|L1 31949 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 563-15 chr10 32805101 32805446 + 3 NA intron (NM_001321115, intron 31 of 43) intron (NM_001321115, intron 31 of 43) 96199 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 372-455 chr7 54064313 54064566 + 3 NA Intergenic Intergenic -252508 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 503-144 chr2 31621197 31621452 + 3 NA Intergenic L1MD1|LINE|L1 -40386 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 782-44 chr3 51084683 51085100 + 3 NA intron (NM_004947, intron 7 of 52) L1MA4|LINE|L1 -300400 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 507-197 chr5 25832933 25833159 + 3 NA Intergenic L1P4|LINE|L1 642093 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 929-29 chr5 156950482 156951039 + 3 NA intron (NM_138379, intron 3 of 8) intron (NM_138379, intron 3 of 8) 12466 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 594-26 chr11 55196850 55197204 + 3 NA Intergenic Intergenic -65128 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 468-299 chr7 52408848 52409120 + 3 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -626649 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 408-269 chr5 97752083 97752240 + 3 NA Intergenic L1MA8|LINE|L1 -88597 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 316-281 chr2 115283493 115283718 + 3 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -25632 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 258-246 chr22 40519892 40520055 + 3 NA intron (NM_020831, intron 3 of 14) L1ME1|LINE|L1 -1827 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 841-24 chr3 94902445 94902896 + 3 NA Intergenic Intergenic -35593 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 520-162 chr2 206522666 206522849 + 3 NA intron (NM_003812, intron 3 of 25) intron (NM_003812, intron 3 of 25) 79225 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 329-53 chr10 43950521 43950703 + 3 NA intron (NR_033846, intron 5 of 7) L1PA16|LINE|L1 38210 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 524-101 chr18 70264312 70264628 + 3 NA Intergenic Intergenic -24575 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 365-115 chr14 28936508 28936723 + 3 NA Intergenic Intergenic -150828 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 505-48 chr11 48662218 48662484 + 3 NA Intergenic ALR/Alpha|Satellite|centr 173558 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 705-20 chr12 12250095 12250529 + 3 NA intron (NM_002336, intron 1 of 22).2 intron (NM_002336, intron 1 of 22).2 16732 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 482-134 chr2 155024138 155024362 + 3 NA Intergenic Intergenic 325555 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 314-182 chr15 37231640 37231836 + 3 NA Intergenic L2a|LINE|L2 -130427 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 868-23 chr21 27089758 27090269 + 3 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -122925 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 552-23 chr10 90443376 90443618 + 3 NA intron (NR_110657, intron 3 of 6) L1MA4A|LINE|L1 97308 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 519-168 chr4 173729028 173729241 + 3 NA Intergenic L1M4a2|LINE|L1 -168139 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 464-251 chr8 54993286 54993629 + 3 NA Intergenic L1M4|LINE|L1 -108571 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 510-194 chr3 178064678 178064959 + 3 NA Intergenic L1MD1|LINE|L1 247953 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 626-156 chrX 82600688 82601104 + 3 NA Intergenic L1M1|LINE|L1 -907394 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 743-33 chr2 49106646 49107172 + 3 NA intron (NM_000145, intron 1 of 9) Charlie17a|DNA|hAT-Charlie 47306 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 487-202 chr4 35214464 35214746 + 3 NA Intergenic Intergenic -944858 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 303-342 chr5 6093169 6093347 + 3 NA Intergenic Intergenic 244034 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 450-166 chr20 15670456 15670716 + 3 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 252728 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 684-83 chr4 33675645 33676195 + 3 NA Intergenic L1ME2|LINE|L1 363973 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 425 chr1 5094313 5094596 + 3 NA Intergenic L1ME3A|LINE|L1 439845 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 568-148 chr4 64236896 64237190 + 3 NA Intergenic Intergenic 172407 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 521-125 chr2 130722700 130722905 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -6268 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 578-54 chr14 40231358 40231762 + 3 NA Intergenic Intergenic -723151 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 450-106 chr16 72710242 72710484 + 3 NA Intergenic L1M4c|LINE|L1 -45393 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 960-23 chr2 136493329 136493864 + 3 NA Intergenic L1MC4|LINE|L1 -271949 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 427-247 chr7 64552093 64552313 + 3 NA intron (NM_001130022, intron 1 of 3) AluSx1|SINE|Alu 10868 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 503-186 chr22 47950986 47951224 + 3 NA Intergenic MLT2A1|LTR|ERVL 319431 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 472-45 chr11 24176961 24177132 + 3 NA Intergenic Intergenic -320007 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 596-20 chr10 23834939 23835137 + 3 NA intron (NM_001098500, intron 1 of 18) L2a|LINE|L2 140311 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 448-146 chr22 30607461 30607690 + 3 NA promoter-TSS (NM_001282328) promoter-TSS (NM_001282328) 401 NM_000355 6948 Hs.417948 NM_000355 ENSG00000185339 TCN2 D22S676|D22S750|II|TC|TC II|TC-2|TC2|TCII transcobalamin 2 protein-coding 261-143 chr17 53681580 53681761 + 3 NA Intergenic Intergenic -141257 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 364-213 chr2 103217947 103218106 + 3 NA Intergenic Intergenic -233597 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 549-170 chr5 101493123 101493464 + 3 NA Intergenic Intergenic -590011 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 467-172 chr3 17122294 17122484 + 3 NA Intergenic Intergenic 189193 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 478-156 chr2 196032278 196032515 + 3 NA intron (NM_018897, intron 5 of 64) HAL1ME|LINE|L1 36441 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 260-183 chr18 47940137 47940325 + 3 NA Intergenic Intergenic -9085 NM_001135937 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 610-119 chr3 140392196 140392445 + 3 NA intron (NM_022131, intron 2 of 16) Charlie5|DNA|hAT-Charlie 116469 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 761-53 chr5 16007260 16007565 + 3 NA Intergenic Intergenic 72230 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 346-51 chr10 82451775 82451932 + 3 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -218933 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 369-388 chr7 97479296 97479614 + 3 NA Intergenic Intergenic -252631 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 413-75 chr12 131423640 131423929 + 3 NA Intergenic Intergenic 76314 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 333-95 chr11 82445955 82446154 + 3 NA Intergenic L2a|LINE|L2 -42141 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 454-165 chr2 119830037 119830339 + 3 NA intron (NM_002830, intron 2 of 26) L1MB4|LINE|L1 70266 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 700-60 chr22 48478786 48479104 + 3 NA Intergenic Intergenic -10608 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 594-95 chr3 190237958 190238224 + 3 NA Intergenic MER104|DNA|TcMar-Tc2 84355 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 293-373 chr6 82577460 82577684 + 3 NA Intergenic L1MC3|LINE|L1 213328 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 411-126 chr18 5330559 5330731 + 3 NA Intergenic L1ME3A|LINE|L1 -33592 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 730-57 chr5 42740680 42741009 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -15974 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 741-22 chr15 69683682 69684134 + 3 NA intron (NR_126438, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 91708 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 521-265 chr9 10184866 10185175 + 3 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 385628 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 484-276 chr8 134402719 134403000 + 3 NA Intergenic L2a|LINE|L2 -195212 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 991-6 chr11 58336005 58336545 + 3 NA Intergenic Intergenic 22794 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 606-31 chr11 114823571 114823813 + 3 NA Intergenic L2c|LINE|L2 145165 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 672-87 chr5 11279985 11280323 + 3 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 308763 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 626-119 chr5 131904182 131904522 + 3 NA intron (NM_001303622, intron 8 of 12) L1PA15|LINE|L1 41311 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 321-454 chr5 27358530 27358694 + 3 NA Intergenic Intergenic -113680 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 404-46 chr10 77013783 77014008 + 3 NA intron (NM_001271519, intron 17 of 28) intron (NM_001271519, intron 17 of 28) 125851 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 500-308 chr8 129644327 129644550 + 3 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 35801 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 434-42 chr10 104151287 104151625 + 3 NA intron (NM_025145, intron 28 of 37) L1PREC2|LINE|L1 29285 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 460-207 chr3 144140982 144141182 + 3 NA Intergenic Intergenic 168001 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 522-113 chr18 31121877 31122229 + 3 NA intron (NR_110785, intron 2 of 3) intron (NR_110785, intron 2 of 3) -19632 NM_024422 1824 Hs.95612 NM_004949 ENSG00000134755 DSC2 ARVD11|CDHF2|DG2|DGII/III|DSC3 desmocollin 2 protein-coding 413-227 chr4 168393813 168394057 + 3 NA intron (NM_001345927, intron 28 of 37) AluSg|SINE|Alu -75183 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 1059-11 chr3 15643154 15643810 + 3 NA intron (NM_001370753, intron 3 of 3) AluJb|SINE|Alu 41513 NM_001281725 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 368-207 chr18 36998995 36999151 + 3 NA intron (NR_136303, intron 6 of 13) L1M2|LINE|L1 -75259 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 747-36 chr2 167041961 167042377 + 3 NA intron (NM_152381, intron 2 of 10) L1PA15|LINE|L1 98786 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 968-12 chr21 28639754 28640238 + 3 NA Intergenic Intergenic 100678 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 657-111 chrX 91735619 91736003 + 3 NA Intergenic L1M1|LINE|L1 -99650 NM_001168363 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 515-145 chr20 59382174 59382391 + 3 NA Intergenic Intergenic 81671 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 415-28 chr10 33449490 33449754 + 3 NA Intergenic Intergenic -114717 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 256-77 chr12 3546518 3546624 + 3 NA intron (NM_019854, intron 2 of 9) L1ME2|LINE|L1 -53752 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 698-63 chr3 189404159 189404533 + 3 NA Intergenic Intergenic -163752 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 719-78 chr8 68832987 68833463 + 3 NA Intergenic L1MEc|LINE|L1 270965 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 546-160 chr4 16867942 16868157 + 3 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 30596 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 808-14 chr14 65998932 65999368 + 3 NA Intergenic Intergenic -487221 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 1075-6 chr16 81337589 81338301 + 3 NA intron (NM_022041, intron 1 of 10) intron (NM_022041, intron 1 of 10) 22979 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 441-119 chr2 33616622 33616799 + 3 NA Intergenic HUERS-P1-int|LTR|ERV1 -17348 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 716-18 chr12 43478362 43478708 + 3 NA intron (NM_025003, intron 7 of 38) L1ME3F|LINE|L1 73668 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 550-102 chr19 36423450 36423736 + 3 NA TTS (NR_033748) TTS (NR_033748) 2419 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 549-137 chr3 48326170 48326442 + 3 NA intron (NM_001080525, intron 1 of 4) intron (NM_001080525, intron 1 of 4) 2035 NM_001080525 646424 Hs.257687 NM_001080525 ENSG00000229453 SPINK8 - serine peptidase inhibitor, Kazal type 8 (putative) protein-coding 349-402 chr5 6580569 6580690 + 3 NA Intergenic Intergenic -1507 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 365-319 chr5 54293360 54293527 + 3 NA intron (NM_019087, intron 1 of 4) Charlie15b|DNA|hAT-Charlie 17130 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 298-463 chr8 99928851 99929036 + 3 NA Intergenic Intergenic -35236 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 439-55 chr11 60062769 60062938 + 3 NA intron (NM_006138, intron 3 of 6).2 AluSz|SINE|Alu 6188 NM_001031666 932 Hs.99960 NM_006138 ENSG00000149516 MS4A3 CD20L|HTM4 membrane spanning 4-domains A3 protein-coding 496-185 chr3 134786998 134787233 + 3 NA Intergenic L1MA9|LINE|L1 -8145 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 720-27 chr14 55860938 55861415 + 3 NA Intergenic L1PREC2|LINE|L1 -64502 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 479-112 chr2 154801756 154802061 + 3 NA intron (NM_002239, intron 2 of 2) AluJb|SINE|Alu 103213 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 680-13 chr1 237135201 237135581 + 3 NA intron (NM_001035, intron 1 of 104) AluY|SINE|Alu 93207 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 1061-12 chr7 50370092 50370570 + 3 NA TTS (NM_001291845) TTS (NM_001291845) 51283 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 679-15 chr10 67445206 67445677 + 3 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -42031 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 791-11 chr10 104963220 104963818 + 3 NA intron (NM_014978, intron 3 of 26) L2a|LINE|L2 -297303 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 756-59 chr8 89670279 89670731 + 3 NA Intergenic Intergenic 87206 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 558-103 chr2 123096906 123097209 + 3 NA Intergenic Intergenic -23576 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 645-26 chr14 38446513 38446785 + 3 NA Intergenic L1PA14|LINE|L1 -190556 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 689-64 chr3 130335206 130335595 + 3 NA Intergenic L1MA2|LINE|L1 -10116 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 909-3 chr1 227645437 227645914 + 3 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 52032 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 506-31 chr10 28958358 28958599 + 3 NA Intergenic L1MA6|LINE|L1 112070 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 455-25 chr10 43042367 43042654 + 3 NA Intergenic Intergenic -34517 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 692-66 chr3 104772004 104772516 + 3 NA Intergenic L1M5|LINE|L1 -594453 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 503-243 chr6 65046055 65046403 + 3 NA intron (NM_001292009, intron 13 of 43) intron (NM_001292009, intron 13 of 43) -255189 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 436-323 chr8 139747246 139747401 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -44200 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 215-213 chr4 439387 439565 + 3 NA TTS (NM_133474) TTS (NM_133474) 34733 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 958-4 chr1 189818519 189818870 + 3 NA Intergenic L1ME1|LINE|L1 657316 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 446-68 chr11 92614889 92615222 + 3 NA intron (NM_001008781, intron 2 of 24) L1MB8|LINE|L1 262959 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 388-75 chr12 23624846 23625089 + 3 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -40381 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 376-110 chr14 76216995 76217196 + 3 NA Intergenic Intergenic 62741 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 463-168 chr21 16699984 16700188 + 3 NA Intergenic L1ME1|LINE|L1 109849 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 552-227 chr9 98812907 98813288 + 3 NA intron (NM_024642, intron 1 of 9) L1MEd|LINE|L1 5427 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 648-85 chr3 44702243 44702660 + 3 NA Intergenic Cheshire|DNA|hAT-Charlie -10192 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 586-58 chr16 64078599 64078823 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 1043352 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 288-183 chr2 57031115 57031262 + 3 NA Intergenic Intergenic -845418 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 388-135 chr17 68299686 68299862 + 3 NA intron (NM_001352902, intron 1 of 12) L1MC5|LINE|L1 7639 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 607-75 chr2 78212944 78213215 + 3 NA intron (NR_110288, intron 1 of 3) L1MA3|LINE|L1 77652 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 739-7 chr10 29632870 29633417 + 3 NA intron (NM_001323599, intron 3 of 38) AluSx3|SINE|Alu 1828 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 470-197 chr4 71599580 71599779 + 3 NA Intergenic Intergenic 184400 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 461-296 chrX 37376161 37376436 + 3 NA intron (NM_001173490, intron 1 of 3) L1MEa|LINE|L1 26934 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 432-55 chr11 131096253 131096435 + 3 NA Intergenic Intergenic -179857 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 351-74 chr11 81794199 81794406 + 3 NA Intergenic Intergenic 96534 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 1095-14 chrX 45285936 45286501 + 3 NA Intergenic Intergenic -85342 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 278-80 chr12 113672230 113672330 + 3 NA Intergenic MER33|DNA|hAT-Charlie 101403 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 264-355 chr6 53426687 53426804 + 3 NA Intergenic Intergenic -77566 NM_001242831 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 259-233 chr20 42984382 42984538 + 3 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 15717 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 559-189 chr8 119406132 119406386 + 3 NA Intergenic L1PA16|LINE|L1 -10187 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 452-280 chr8 134244652 134244880 + 3 NA Intergenic L1PA17|LINE|L1 -353305 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 724-51 chr3 78319787 78320266 + 3 NA Intergenic Intergenic -271063 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 575-67 chr17 33401144 33401373 + 3 NA intron (NM_001094, intron 1 of 9) MLT1I|LTR|ERVL-MaLR -108270 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 1745-2 chr12 33040890 33041755 + 3 NA Intergenic L1ME2z|LINE|L1 -144476 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 822-20 chr17 52253877 52254396 + 3 NA Intergenic L1M5|LINE|L1 -94119 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 515-44 chr11 74401710 74401966 + 3 NA Intergenic Intergenic 2601 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 532-39 chr12 13787009 13787223 + 3 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 193240 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 374-299 chr5 17432998 17433165 + 3 NA intron (NR_134274, intron 1 of 1) intron (NR_134274, intron 1 of 1) -3656 NR_134273 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 281-297 chr3 143330235 143330434 + 3 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) -11912 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 437-287 chr8 138743479 138743817 + 3 NA intron (NM_152888, intron 22 of 64) MamGypsy2-LTR|LTR|Gypsy 170393 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 435-97 chr16 80662237 80662452 + 3 NA intron (NM_152342, intron 2 of 6) intron (NM_152342, intron 2 of 6) -89536 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 534-158 chr3 6842385 6842645 + 3 NA Intergenic LTR1D1|LTR|ERV1 -18600 NM_000844 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 399-247 chr5 53568674 53568855 + 3 NA intron (NR_134474, intron 1 of 5) intron (NR_134474, intron 1 of 5) 8125 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 797-28 chr2 150661293 150661805 + 3 NA Intergenic MSTB1-int|LTR|ERVL-MaLR 32652 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 379-293 chr6 68479220 68479357 + 3 NA Intergenic LTR51|LTR|ERV1 -149389 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 664-124 chr9 86091549 86091972 + 3 NA intron (NM_177937, intron 1 of 9) intron (NM_177937, intron 1 of 9) 7798 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 375-295 chr4 91565360 91565558 + 3 NA intron (NM_001145065, intron 10 of 10) L1PA14|LINE|L1 711843 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 453-147 chr22 20946461 20946642 + 3 NA intron (NR_156180, intron 2 of 3) intron (NR_156180, intron 2 of 3) -10541 NR_110537 101928891 Hs.648264 NR_110537 ENSG00000237476 LINC01637 - long intergenic non-protein coding RNA 1637 ncRNA 538-52 chr12 33048034 33048410 + 3 NA Intergenic L2b|LINE|L2 -151376 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 449-230 chr6 38195438 38195620 + 3 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -286067 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 329-578 chr8 90381563 90381805 + 3 NA intron (NR_051989, intron 3 of 3) L1MDb|LINE|L1 160196 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 463-202 chr3 192125397 192125654 + 3 NA Intergenic Intergenic -113105 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 495-47 chr12 48976348 48976673 + 3 NA Intergenic MIRb|SINE|MIR -1812 NM_005430 7471 Hs.248164 NM_005430 ENSG00000125084 WNT1 BMND16|INT1|OI15 Wnt family member 1 protein-coding 240-134 chr14 52873519 52873691 + 3 NA intron (NM_006832, intron 9 of 14) intron (NM_006832, intron 9 of 14) 77445 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 461-3 chr1 60810697 60810981 + 3 NA intron (NR_110628, intron 1 of 5) intron (NR_110628, intron 1 of 5) 14745 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 499-99 chr19 11703776 11704066 + 3 NA Intergenic L1M4c|LINE|L1 29923 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 553-165 chr4 31201437 31201769 + 3 NA intron (NR_125935, intron 4 of 4) L1ME2|LINE|L1 30459 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 422-130 chr18 70990919 70991197 + 3 NA Intergenic Intergenic -340104 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 435-11 chr1 82521242 82521417 + 3 NA Intergenic Intergenic -381854 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 533-141 chr3 144931206 144931582 + 3 NA Intergenic L1MA2|LINE|L1 958313 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 376-63 chr10 124726845 124727021 + 3 NA intron (NM_014661, intron 1 of 4) intron (NM_014661, intron 1 of 4) 17445 NM_014661 9679 Hs.129195 NM_014661 ENSG00000189319 FAM53B KIAA0140|bA12J10.2|smp family with sequence similarity 53 member B protein-coding 486-221 chr4 45890831 45891086 + 3 NA Intergenic LTR34|LTR|ERV1 233096 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 691-29 chr14 104257256 104257836 + 3 NA intron (NR_146612, intron 1 of 2) L1ME1|LINE|L1 33962 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 424-240 chr6 54326606 54326788 + 3 NA intron (NM_014464, intron 3 of 10) intron (NM_014464, intron 3 of 10) 18256 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 446-281 chr7 88673032 88673235 + 3 NA Intergenic HAL1|LINE|L1 -86567 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 507-54 chr11 70488218 70488477 + 3 NA intron (NM_133266, intron 9 of 10) intron (NM_133266, intron 9 of 10) 89818 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 447-110 chr19 29156235 29156458 + 3 NA Intergenic Intergenic 56805 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 1043-4 chr18 11585233 11585759 + 3 NA Intergenic MER50-int|LTR|ERV1 -24062 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 426-66 chr13 22649668 22649851 + 3 NA Intergenic Intergenic 248422 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 632-3 chr1 83958105 83958414 + 3 NA intron (NM_001350214, intron 1 of 21) Charlie21a|DNA|hAT-Charlie 40873 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 625-68 chr3 7225016 7225346 + 3 NA intron (NM_000844, intron 2 of 9) L1ME4c|LINE|L1 310103 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 506-153 chr2 122730762 122731145 + 3 NA Intergenic Intergenic 342528 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 268-128 chr15 36078284 36078421 + 3 NA Intergenic Intergenic 151496 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 470-278 chr8 133698703 133698907 + 3 NA Intergenic AluJr|SINE|Alu -14739 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 437-150 chr2 185738016 185738219 + 3 NA promoter-TSS (NM_173651) promoter-TSS (NM_173651) 602 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 822-67 chr9 30364348 30364958 + 3 NA Intergenic Intergenic 43801 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 569-39 chr11 84699675 84699931 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 21139 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 466-139 chr2 125990845 125991124 + 3 NA Intergenic L1MA3|LINE|L1 127001 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 736-63 chr4 57892413 57892762 + 3 NA Intergenic Intergenic 466715 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 570-70 chr15 77398771 77399083 + 3 NA intron (NM_024776, intron 1 of 7) L1MA3|LINE|L1 21177 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 360-20 chr1 216440239 216440474 + 3 NA Intergenic L1ME3A|LINE|L1 -16908 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 485-226 chr5 60964851 60965153 + 3 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 19797 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 300-10 chr1 80003699 80003804 + 3 NA Intergenic L1ME1|LINE|L1 -532004 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 522-171 chr3 44661373 44661666 + 3 NA TTS (NM_003420) TTS (NM_003420) 12787 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 300-334 chr4 100495546 100495788 + 3 NA intron (NM_001159694, intron 1 of 10) intron (NM_001159694, intron 1 of 10) 22355 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 521-126 chr2 132939902 132940224 + 3 NA intron (NM_207481, intron 8 of 17) L1PB2|LINE|L1 24506 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 548-108 chr2 22715352 22715607 + 3 NA Intergenic Intergenic 179000 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 443-269 chr6 148117928 148118199 + 3 NA Intergenic Intergenic -154265 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 467-277 chr8 62384639 62384876 + 3 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 135903 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 760-72 chr8 20020494 20020975 + 3 NA Intergenic L2c|LINE|L2 81481 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 692-95 chr7 123651048 123651445 + 3 NA Intergenic Intergenic -4620 NM_207163 442721 Hs.592260 NM_207163 ENSG00000170807 LMOD2 C-LMOD|CLMOD leiomodin 2 protein-coding 476-175 chr3 18628893 18629072 + 3 NA Intergenic Intergenic -183390 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 373-155 chr17 48761427 48761563 + 3 NA TTS (NM_173623) TTS (NM_173623) -32746 NM_006361 10481 Hs.66731 NM_006361 ENSG00000159184 HOXB13 HPC9|PSGD homeobox B13 protein-coding 834-19 chr19 53263731 53264127 + 3 NA Intergenic L1M5|LINE|L1 3736 NM_173857 317703 Hs.553685 NM_173857 ENSG00000228567 VN1R4 V1RL4 vomeronasal 1 receptor 4 protein-coding 320-220 chr18 12826815 12826975 + 3 NA intron (NM_080423, intron 4 of 8) intron (NM_080423, intron 4 of 8) 14067 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 457-47 chr12 37801633 37801818 + 3 NA Intergenic ALR/Alpha|Satellite|centr -515049 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1273-3 chr12 42923427 42924104 + 3 NA Intergenic Intergenic 231549 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 640 chr1 31458679 31459078 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 -41207 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LDC1P LINC01225 leucine decarboxylase 1, pseudogene pseudo 358-487 chr8 111523327 111523453 + 3 NA Intergenic L1MA8|LINE|L1 146751 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 537-174 chr4 66021783 66022016 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -254925 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 594-67 chr2 44904496 44904760 + 3 NA Intergenic Intergenic 34260 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 486-275 chr7 40663191 40663436 + 3 NA intron (NM_001193312, intron 11 of 12) L1ME4a|LINE|L1 316626 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 374-157 chr18 71860196 71860335 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -78039 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 522-209 chr5 76095594 76095777 + 3 NA intron (NM_014979, intron 1 of 12) intron (NM_014979, intron 1 of 12) 12302 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 254-357 chr6 138679783 138679894 + 3 NA Intergenic Intergenic -11830 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 334-466 chr6 117653622 117653821 + 3 NA Intergenic Intergenic 21563 NR_110854 101927919 Hs.467500 NR_110854 LOC101927919 - uncharacterized LOC101927919 ncRNA 556-14 chr10 4884434 4884646 + 3 NA intron (NR_026743, intron 7 of 10) L1MB3|LINE|L1 31733 NR_026743 389932 Hs.631812 NR_026743 AKR1C6P TAKR aldo-keto reductase family 1 member C6, pseudogene pseudo 1196-5 chr20 9060773 9061294 + 3 NA Intergenic Intergenic -8021 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 489-200 chr4 176910681 176910887 + 3 NA Intergenic L1PA8A|LINE|L1 35082 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 366-309 chr4 58041647 58041794 + 3 NA Intergenic Intergenic 494608 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 417-19 chr1 215510567 215510815 + 3 NA Intergenic L1MA4|LINE|L1 -56613 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 627-25 chr13 113911380 113911832 + 3 NA intron (NM_001278674, intron 3 of 7) L1MDa|LINE|L1 16503 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 452-12 chr1 159536823 159537023 + 3 NA promoter-TSS (NM_001004469) promoter-TSS (NM_001004469) -916 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 458-51 chr12 107388982 107389314 + 3 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) 68560 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 466-105 chr18 3687502 3687867 + 3 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 83947 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 536-191 chr5 175703685 175703997 + 3 NA intron (NR_160284, intron 3 of 3) L1MB3|LINE|L1 45770 NM_001131055 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 407-87 chr14 87473959 87474153 + 3 NA Intergenic Intergenic 181238 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 306-384 chr5 19679674 19679834 + 3 NA intron (NM_001349562, intron 5 of 13) L1PA15|LINE|L1 206518 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 271-366 chr6 2918907 2919080 + 3 NA Intergenic MER41B|LTR|ERV1 -15684 NM_004155 5272 Hs.104879 NM_004155 ENSG00000170542 SERPINB9 CAP-3|CAP3|PI-9|PI9 serpin family B member 9 protein-coding 517-216 chr5 73017197 73017580 + 3 NA intron (NM_001146032, intron 7 of 24) intron (NM_001146032, intron 7 of 24) 61347 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 668-48 chr2 76775650 76776071 + 3 NA intron (NR_146416, intron 1 of 1) L1PA2|LINE|L1 -210105 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 454-298 chr7 67531422 67531639 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 195554 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 528-26 chr10 16019649 16019861 + 3 NA Intergenic MIRc|SINE|MIR -159222 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 388-140 chr18 65152387 65152624 + 3 NA Intergenic Intergenic -597747 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 677-53 chr22 27729079 27729455 + 3 NA Intergenic Intergenic 72489 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 470-4 chr1 52712342 52712559 + 3 NA Intergenic L1MB7|LINE|L1 -14003 NM_024646 79699 Hs.476280 NM_024646 ENSG00000162378 ZYG11B ZYG11 zyg-11 family member B, cell cycle regulator protein-coding 701-36 chr18 11736808 11737244 + 3 NA intron (NM_182978, intron 1 of 11) L1MC4|LINE|L1 -14446 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 301-467 chr8 134061549 134061688 + 3 NA Intergenic L1MA7|LINE|L1 175122 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 339-496 chr6 85032132 85032348 + 3 NA Intergenic Intergenic -267642 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 746-32 chr19 33745509 33745883 + 3 NA intron (NM_001127895, intron 3 of 4) LTR16A|LTR|ERVL -51174 NM_024076 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 749-46 chr19 24366962 24367473 + 3 NA Intergenic ALR/Alpha|Satellite|centr -203770 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 404-9 chr1 77628743 77628959 + 3 NA intron (NM_001308237, intron 4 of 13) intron (NM_001308237, intron 4 of 13) 53807 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 354-205 chr2 42529109 42529295 + 3 NA intron (NM_001282755, intron 2 of 17) Charlie15a|DNA|hAT-Charlie 34633 NM_001282755 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 524-57 chr13 97398952 97399237 + 3 NA Intergenic Intergenic -35075 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 502-95 chr14 88951969 88952136 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 127401 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 163-55 chr17 53279437 53279508 + 3 NA Intergenic (AATACA)n|Simple_repeat|Simple_repeat 293967 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 507-283 chrX 54672209 54672520 + 3 NA Intergenic Intergenic 125891 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 390-329 chr6 86362738 86362925 + 3 NA Intergenic LTR40a|LTR|ERVL -574697 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 600-57 chr2 13801995 13802311 + 3 NA Intergenic L2|LINE|L2 598805 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 883-18 chr2 115507535 115508029 + 3 NA intron (NM_001321912, intron 5 of 25) L2a|LINE|L2 163967 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 392-133 chr19 44178570 44178748 + 3 NA TTS (NM_001319088) TTS (NM_001319088) 13495 NM_001032372 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 481-99 chr15 56808042 56808241 + 3 NA Intergenic Intergenic -74055 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 549-19 chr10 20034794 20035075 + 3 NA intron (NM_001282736, intron 2 of 12) Tigger3a|DNA|TcMar-Tigger 218502 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 423-75 chr14 56095684 56095915 + 3 NA Intergenic Intergenic -22612 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 323-31 chr1 187756321 187756467 + 3 NA Intergenic Intergenic 312766 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 602-88 chr3 88370110 88370503 + 3 NA intron (NM_001368167, intron 2 of 2) MER65A|LTR|ERV1 31850 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 506-87 chr14 62912095 62912403 + 3 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 133209 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 434-132 chr2 15259061 15259315 + 3 NA intron (NR_052013, intron 44 of 50) intron (NR_052013, intron 44 of 50) 302146 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 404-255 chr5 39297103 39297283 + 3 NA intron (NM_001737, intron 9 of 10) L1MA5A|LINE|L1 -26544 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 455-99 chr17 72294106 72294312 + 3 NA Intergenic Intergenic -48602 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 622-2 chr1 41493326 41493722 + 3 NA Intergenic Intergenic -8841 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 376-348 chr6 77965431 77965625 + 3 NA Intergenic Intergenic 312489 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 530-205 chr5 122167560 122167911 + 3 NA intron (NM_001195535, intron 1 of 2) L1ME1|LINE|L1 7559 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 433-178 chr3 109537450 109537773 + 3 NA Intergenic Intergenic -65217 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 295-271 chr21 32243268 32243426 + 3 NA Intergenic L1ME1|LINE|L1 35702 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 419-272 chr7 51146870 51147039 + 3 NA intron (NM_015198, intron 5 of 12) intron (NM_015198, intron 5 of 12) 169855 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 432-5 chr1 48608693 48608875 + 3 NA intron (NM_001323575, intron 9 of 12) intron (NM_001323575, intron 9 of 12) -136576 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 596-93 chr2 81330496 81330859 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 136269 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 735-69 chr5 46223736 46224271 + 3 NA Intergenic ALR/Alpha|Satellite|centr -527623 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 520-180 chr3 10729166 10729496 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR 34878 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 580-170 chr6 145245714 145246100 + 3 NA Intergenic Intergenic 440970 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 620-156 chrX 75255928 75256179 + 3 NA intron (NM_001363821, intron 4 of 9) L1PBa|LINE|L1 -18006 NM_001307944 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 474-130 chr2 30683284 30683494 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 124057 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 357-245 chr21 18861929 18862068 + 3 NA Intergenic Intergenic -102186 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 596-142 chr6 139431570 139431864 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 42879 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 310-141 chr14 67243023 67243174 + 3 NA intron (NM_001256550, intron 1 of 14) intron (NM_001256550, intron 1 of 14) 1663 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 758-41 chr2 82474812 82475237 + 3 NA Intergenic Intergenic -381779 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 608-24 chr11 78749911 78750211 + 3 NA intron (NM_001098816, intron 19 of 33) intron (NM_001098816, intron 19 of 33) -175197 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 397-275 chr6 50420505 50420777 + 3 NA Intergenic L1MB7|LINE|L1 -292903 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 333-143 chr14 39696453 39696649 + 3 NA Intergenic Intergenic -264051 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 558-55 chr14 72704348 72704585 + 3 NA intron (NM_001280544, intron 6 of 9) intron (NM_001280544, intron 6 of 9) 187646 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 769-31 chr2 137721337 137721869 + 3 NA Intergenic HERVL-int|LTR|ERVL 206329 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 393-199 chr20 39431880 39432109 + 3 NA Intergenic Intergenic -207246 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 576-45 chr14 40269689 40269980 + 3 NA Intergenic Intergenic -684877 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 357-142 chr16 47994741 47994969 + 3 NA Intergenic L2c|LINE|L2 29166 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 678-24 chr12 129683197 129683560 + 3 NA intron (NM_133448, intron 2 of 8) MIR|SINE|MIR 220647 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 767-15 chr16 59149941 59150415 + 3 NA Intergenic Intergenic -415862 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 343-233 chr2 44040121 44040310 + 3 NA Intergenic MER53|DNA|hAT -44226 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 430-162 chr2 152825769 152825983 + 3 NA Intergenic Intergenic 107239 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 695-68 chr3 164944676 164945064 + 3 NA Intergenic Intergenic -113390 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 190-148 chr5 75848623 75848688 + 3 NA Intergenic Intergenic -131218 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 372-351 chr4 31545590 31545845 + 3 NA intron (NR_149121, intron 1 of 2) L1MC3|LINE|L1 39173 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 474-243 chr5 122734687 122735021 + 3 NA Intergenic L1MC5a|LINE|L1 -4294 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 379-85 chr13 105369401 105369614 + 3 NA Intergenic Intergenic -96360 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 533-217 chr7 63201003 63201195 + 3 NA Intergenic Intergenic 102957 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 566-84 chr2 31701812 31702028 + 3 NA Intergenic L1M3b|LINE|L1 102060 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 622-27 chr14 47811907 47812243 + 3 NA Intergenic L1PB1|LINE|L1 -17061 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 393-242 chr4 66993231 66993475 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 428647 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 401-17 chr1 224833234 224833436 + 3 NA Intergenic MIRb|SINE|MIR -96319 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 458-79 chr14 82202583 82202876 + 3 NA Intergenic L1MA9|LINE|L1 -439903 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 387-331 chr7 9934601 9934800 + 3 NA Intergenic L1MC|LINE|L1 300430 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 512-110 chr19 29057472 29057787 + 3 NA Intergenic Intergenic 55074 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 468-15 chr1 188414773 188414959 + 3 NA Intergenic Intergenic 971238 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 500-192 chr3 157061211 157061500 + 3 NA Intergenic L1P5|LINE|L1 -20486 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 393-82 chr13 63398540 63398805 + 3 NA Intergenic Intergenic -70578 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 527-175 chr3 82838146 82838526 + 3 NA Intergenic Intergenic 852194 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 331-552 chr9 31963393 31963541 + 3 NA Intergenic L1PA11|LINE|L1 -421136 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 248-254 chr3 131774216 131774388 + 3 NA intron (NM_130808, intron 2 of 15) MLT1L|LTR|ERVL-MaLR 211629 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 482-243 chr7 33168413 33168670 + 3 NA intron (NM_198428, intron 4 of 22) MER57A-int|LTR|ERV1 38977 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 333-73 chr10 113688564 113688700 + 3 NA intron (NM_001227, intron 1 of 6) L1PBb|LINE|L1 8720 NM_033339 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 684-15 chr10 70799820 70800269 + 3 NA Intergenic MER84-int|LTR|ERV1 -14625 NM_001318241 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 571-64 chr18 75077806 75078008 + 3 NA Intergenic HAL1|LINE|L1 127606 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 540-52 chr12 41247214 41247509 + 3 NA intron (NM_001164595, intron 3 of 9) MER5A|DNA|hAT-Charlie 59041 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 362-419 chr7 144056133 144056279 + 3 NA Intergenic L1MEi|LINE|L1 5804 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 553-154 chr3 100944079 100944405 + 3 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 49248 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 510-294 chr9 133015311 133015518 + 3 NA Intergenic L1ME3|LINE|L1 -5016 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 619-48 chr14 71087943 71088296 + 3 NA intron (NM_014982, intron 28 of 35) intron (NM_014982, intron 28 of 35) 180660 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 654-104 chr5 164128216 164128565 + 3 NA Intergenic Intergenic 339012 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 474-146 chr2 118620306 118620588 + 3 NA Intergenic Intergenic -17481 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 423-197 chr4 65172468 65172762 + 3 NA Intergenic Intergenic -168115 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 230-171 chr2 59481254 59481373 + 3 NA Intergenic Intergenic 263605 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 384-369 chr8 79393120 79393338 + 3 NA Intergenic MIRb|SINE|MIR 61041 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 434-284 chr8 76226943 76227230 + 3 NA Intergenic Intergenic -179568 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 312-319 chr3 24886846 24886955 + 3 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 57577 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 513-258 chr7 13472046 13472298 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 514342 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 322-134 chr12 114235374 114235537 + 3 NA Intergenic L2b|LINE|L2 6315 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 709-39 chr2 59132453 59132950 + 3 NA Intergenic Intergenic -85007 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 420-287 chr8 85501856 85502086 + 3 NA Intergenic MIRb|SINE|MIR -37056 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 973-16 chr20 12308007 12308403 + 3 NA Intergenic L1M3|LINE|L1 390312 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 515-63 chr14 28548498 28548734 + 3 NA Intergenic L1MC|LINE|L1 216703 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 609-132 chr7 143124789 143125099 + 3 NA intron (NM_001130026, intron 9 of 10) LTR49-int|LTR|ERV1 -7133 NM_002652 5304 Hs.99949 NM_002652 ENSG00000159763 PIP GCDFP-15|GCDFP15|GPIP4 prolactin induced protein protein-coding 500-141 chr2 115313256 115313483 + 3 NA intron (NM_001321909, intron 2 of 24) intron (NM_001321909, intron 2 of 24) 4132 NM_020868 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1026-21 chr5 107348044 107348784 + 3 NA Intergenic Plat_L3|LINE|CR1 322523 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 421-7 chr1 75054870 75055116 + 3 NA Intergenic Intergenic -73441 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 530-106 chr19 3939403 3939582 + 3 NA intron (NR_110316, intron 4 of 4) AluSx|SINE|Alu 6389 NR_110316 27231 Hs.135458 NM_014446 ENSG00000077009 NMRK2 ITGB1BP3|MIBP|NRK2 nicotinamide riboside kinase 2 protein-coding 686-33 chr19 12462260 12462629 + 3 NA 3' UTR (NM_152601, exon 4 of 4) 3' UTR (NM_152601, exon 4 of 4) -21423 NM_005815 10224 Hs.636894 NM_005815 ENSG00000180855 ZNF443 ZK1 zinc finger protein 443 protein-coding 605-6 chr1 176347256 176347483 + 3 NA Intergenic Intergenic -115806 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 408-364 chrX 152047142 152047381 + 3 NA Intergenic MER65-int|LTR|ERV1 70678 NM_021049 4104 Hs.18048 NM_021049 MAGEA5 CT1.5|MAGE5|MAGEA4 MAGE family member A5 protein-coding 569-27 chr10 67595548 67595745 + 3 NA intron (NM_001127384, intron 3 of 17) L1PA15|LINE|L1 70014 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 578-86 chr2 75304172 75304470 + 3 NA Intergenic Intergenic -104801 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 284-212 chr2 148499451 148499579 + 3 NA intron (NM_018328, intron 12 of 14) intron (NM_018328, intron 12 of 14) -145236 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 534-220 chr6 113574713 113574918 + 3 NA Intergenic Intergenic 75260 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 822-52 chr6 84433392 84433797 + 3 NA intron (NR_132100, intron 4 of 4) intron (NR_132100, intron 4 of 4) 41335 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 532-218 chr6 10961617 10961925 + 3 NA intron (NM_001040274, intron 28 of 29) intron (NM_001040274, intron 28 of 29) -7682 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 695-72 chr4 107106560 107106827 + 3 NA Intergenic L1MC|LINE|L1 -70380 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 458-228 chr6 149241486 149241737 + 3 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) 15940 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 457-257 chr8 84737985 84738269 + 3 NA intron (NM_001287244, intron 1 of 7) L2c|LINE|L2 32200 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 220-248 chr4 30655404 30655559 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -64888 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 546-118 chr2 150997692 150997987 + 3 NA Intergenic Intergenic 264024 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 201-216 chr6 44822012 44822145 + 3 NA intron (NR_146632, intron 11 of 11) Charlie23a|DNA|hAT-Charlie -270197 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 665-102 chr8 43653559 43653988 + 3 NA Intergenic ALR/Alpha|Satellite|centr 361331 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 363-457 chr8 131190632 131190865 + 3 NA Intergenic Intergenic -149839 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 337-207 chr17 69813668 69813814 + 3 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -147966 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 505-178 chr20 54746028 54746213 + 3 NA Intergenic L1MB7|LINE|L1 270527 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 600-94 chr4 102849988 102850204 + 3 NA intron (NM_181890, intron 1 of 7) L1ME3|LINE|L1 18797 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 1097-7 chr2 98330867 98331363 + 3 NA Intergenic Intergenic -15040 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 537-180 chr4 117122635 117122851 + 3 NA Intergenic Intergenic -37167 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 351-299 chr3 55020174 55020314 + 3 NA intron (NM_018398, intron 35 of 37) L1M5|LINE|L1 -53142 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 698-39 chr2 141437624 141438025 + 3 NA intron (NM_018557, intron 3 of 90) intron (NM_018557, intron 3 of 90) 693877 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 514-228 chr5 100699532 100699842 + 3 NA Intergenic Intergenic 116878 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 797-58 chr8 63940791 63941198 + 3 NA intron (NR_125826, intron 4 of 4) L1MEc|LINE|L1 171564 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 598-89 chr3 86233233 86233611 + 3 NA Intergenic L1ME3F|LINE|L1 -248521 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 828-3 chr1 38592555 38592989 + 3 NA Intergenic L1M5|LINE|L1 117576 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 877-37 chr9 31966315 31966734 + 3 NA Intergenic L1PA8|LINE|L1 -418079 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 664-22 chr10 116416380 116416799 + 3 NA Intergenic Intergenic -11258 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 777-62 chr6 98201491 98201944 + 3 NA Intergenic Intergenic 177186 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 419-223 chr5 15254855 15255030 + 3 NA intron (NR_109944, intron 1 of 2) Charlie8|DNA|hAT-Charlie 11618 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 438-295 chr9 79296557 79296808 + 3 NA Intergenic MIR3|SINE|MIR -151016 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 375-116 chr13 96643890 96644124 + 3 NA intron (NM_153456, intron 1 of 1) L1M4|LINE|L1 216778 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 733-72 chr6 157958784 157959267 + 3 NA Intergenic L1MEc|LINE|L1 -22838 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 666-15 chr11 2224387 2224858 + 3 NA Intergenic L1MCa|LINE|L1 46330 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 928-19 chr3 178396444 178397022 + 3 NA Intergenic Intergenic -22468 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 506-88 chr14 76529240 76529522 + 3 NA Intergenic Intergenic 158034 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 597-135 chr8 142056622 142056964 + 3 NA Intergenic Intergenic -119546 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 575-162 chr5 179046512 179046834 + 3 NA Intergenic Intergenic -13700 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 895-3 chr1 230580698 230581206 + 3 NA Intergenic Intergenic 14631 NR_146479 101927553 Hs.680219 NR_146479 ENSG00000232964 LINC01737 - long intergenic non-protein coding RNA 1737 ncRNA 463-218 chr4 187087494 187087705 + 3 NA Intergenic Intergenic -114387 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 458-201 chr5 40928664 40928934 + 3 NA intron (NM_000587, intron 2 of 17) intron (NM_000587, intron 2 of 17) 19302 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 420-63 chr12 24544040 24544221 + 3 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 18361 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 1242-11 chr5 16278989 16279942 + 3 NA Intergenic Zaphod3|DNA|hAT-Tip100 99224 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 479-212 chr6 46600449 46600662 + 3 NA intron (NM_016593, intron 7 of 11) MER21C|LTR|ERVL 52263 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 369-447 chr9 108113318 108113495 + 3 NA Intergenic Intergenic -623637 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 604-116 chr3 180478298 180478517 + 3 NA Intergenic Intergenic 64234 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 815-10 chr10 66984754 66985284 + 3 NA intron (NR_111911, intron 1 of 6) L2c|LINE|L2 27134 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 569-141 chr5 22767594 22767959 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 85568 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 506-13 chr1 115244667 115244884 + 3 NA Intergenic L1ME3D|LINE|L1 -38259 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 481-108 chr16 31888401 31888749 + 3 NA intron (NM_001265588, intron 4 of 4) L1MA9|LINE|L1 14768 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 507-223 chr6 134412593 134412900 + 3 NA Intergenic Intergenic -24970 NR_038216 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 366-342 chr5 55517419 55517623 + 3 NA intron (NR_103485, intron 1 of 6) intron (NR_103485, intron 1 of 6) -8595 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 459-258 chr6 50400510 50400791 + 3 NA Intergenic L1MA8|LINE|L1 -312894 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 430-46 chr10 130642440 130642713 + 3 NA Intergenic L1MEf|LINE|L1 320092 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 362-52 chr10 31160483 31160631 + 3 NA Intergenic L1MA9|LINE|L1 -27326 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 711-25 chr15 97532037 97532407 + 3 NA Intergenic Intergenic -10411 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 786-50 chr4 185849735 185850152 + 3 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -37687 NM_001145670 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 604-3 chr1 94185664 94185946 + 3 NA intron (NM_001328665, intron 15 of 21) intron (NM_001328665, intron 15 of 21) 51779 NM_001328666 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 313-310 chr20 58287738 58287865 + 3 NA intron (NR_003505, intron 2 of 16) intron (NR_003505, intron 2 of 16) 21638 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 247-426 chr9 27902546 27902661 + 3 NA Intergenic Intergenic -328737 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1505-3 chr4 75475 76175 + 3 NA intron (NM_182524, intron 3 of 3) (T)n|Simple_repeat|Simple_repeat 22504 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 542-200 chr7 37790878 37791205 + 3 NA Intergenic SATR2|Satellite|Satellite -57556 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 439-90 chr14 58913769 58914001 + 3 NA intron (NR_110547, intron 3 of 5) intron (NR_110547, intron 3 of 5) 85597 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 269-218 chr2 228356415 228356559 + 3 NA Intergenic L1ME1|LINE|L1 -174800 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 375-280 chr4 37025426 37025614 + 3 NA Intergenic Intergenic 23741 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 217-164 chr19 50023455 50023572 + 3 NA intron (NM_016440, intron 1 of 14) L2a|LINE|L2 1859 NM_001308420 51231 Hs.443330 NM_016440 ENSG00000105053 VRK3 - VRK serine/threonine kinase 3 protein-coding 404-222 chr3 166973399 166973609 + 3 NA Intergenic Charlie15b|DNA|hAT-Charlie 74821 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 654-95 chr5 33382228 33382590 + 3 NA Intergenic AluJo|SINE|Alu -58287 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 560-128 chr4 111585368 111585618 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -559961 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 548-122 chr2 151484449 151484720 + 3 NA TTS (NM_004543) TTS (NM_004543) 74682 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 392-9 chr1 157685207 157685407 + 3 NA intron (NM_052939, intron 10 of 14) L1MEc|LINE|L1 15462 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 965-19 chr7 3289631 3289986 + 3 NA Intergenic LTR88b|LTR|Gypsy? -11444 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 416-14 chr1 168453551 168453721 + 3 NA Intergenic Intergenic -30980 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 711-33 chr2 34548224 34548624 + 3 NA Intergenic L1M2|LINE|L1 -129133 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 1082-17 chr8 139898474 139898957 + 3 NA intron (NM_001160372, intron 20 of 22) intron (NM_001160372, intron 20 of 22) -195592 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 605-35 chr16 48764754 48765182 + 3 NA Intergenic Intergenic -154788 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 131-58 chr4 80155728 80155814 + 3 NA Intergenic Intergenic -29499 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 361-88 chr11 111069297 111069456 + 3 NA Intergenic Intergenic 27942 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 341-320 chr3 3375377 3375623 + 3 NA Intergenic L1ME3B|LINE|L1 -195783 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 419-69 chr12 48658310 48658496 + 3 NA intron (NM_017822, intron 8 of 9) intron (NM_017822, intron 8 of 9) -1621 NR_002950 677793 Hs.689723 NR_002950 ENSG00000206612 SNORA2A ACA2A small nucleolar RNA, H/ACA box 2A snoRNA 692-88 chr7 34538367 34538826 + 3 NA intron (NR_033665, intron 2 of 3) L1MEc|LINE|L1 -119622 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 457-61 chr14 24512559 24512791 + 3 NA Intergenic Intergenic -4410 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 1360-5 chr5 4332087 4332863 + 3 NA Intergenic Intergenic -441006 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 419-274 chr7 53351812 53351999 + 3 NA Intergenic Intergenic 316272 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 438-226 chr5 105431837 105432102 + 3 NA Intergenic L1MB5|LINE|L1 332495 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 380-39 chr10 42532554 42532761 + 3 NA intron (NR_026777, intron 5 of 7) L1M4c|LINE|L1 20213 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 472-128 chr18 380074 380354 + 3 NA intron (NM_130386, intron 2 of 9) L2b|LINE|L2 -112167 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 524-283 chr9 106048412 106048616 + 3 NA Intergenic Intergenic 353973 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 1071-5 chr15 99939189 99939853 + 3 NA Intergenic L1MA9|LINE|L1 132498 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 436-226 chr5 4261137 4261367 + 3 NA Intergenic Intergenic -512229 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 348-411 chr5 63760690 63760910 + 3 NA Intergenic Intergenic 201492 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 918-25 chr7 9986494 9986980 + 3 NA Intergenic Intergenic 352467 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 435-86 chr15 60867985 60868143 + 3 NA intron (NM_134261, intron 1 of 10) L4_B_Mam|LINE|RTE-X 186495 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 439-54 chr11 59996115 59996464 + 3 NA TTS (NR_130719) TTS (NR_130719) -27514 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 521-76 chr13 65148661 65148983 + 3 NA Intergenic L3|LINE|CR1 -717225 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 893-16 chr12 84356470 84356883 + 3 NA Intergenic HERVL18-int|LTR|ERVL 556123 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 1680-2 chr16 66179882 66180717 + 3 NA Intergenic LOR1b|LTR|ERV1 -186392 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 303-483 chr8 142793714 142793868 + 3 NA Intergenic Intergenic -7252 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 family member D protein-coding 538-81 chr16 61762562 61762914 + 3 NA intron (NM_001796, intron 8 of 11) intron (NM_001796, intron 8 of 11) 273700 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 398-251 chr4 146197614 146197830 + 3 NA Intergenic Intergenic -16816 NM_001354631 345051 Hs.170876 NM_001354631 ENSG00000250673 REELD1 - reeler domain containing 1 protein-coding 1096-5 chr11 31786788 31787368 + 3 NA non-coding (NR_160916, exon 11 of 11) non-coding (NR_160916, exon 11 of 11) 13583 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 856-49 chr8 99492900 99493399 + 3 NA intron (NM_017890, intron 25 of 61) L1MEd|LINE|L1 43581 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 409-90 chr15 52240129 52240286 + 3 NA intron (NM_018728, intron 20 of 40) (T)n|Simple_repeat|Simple_repeat 36993 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 569-19 chr1 240518932 240519234 + 3 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 93072 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 440-56 chr12 130008483 130008727 + 3 NA Intergenic Intergenic 33737 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 341-358 chr3 181501164 181501307 + 3 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -58749 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 463-205 chr4 33341426 33341690 + 3 NA Intergenic Intergenic 698335 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 733-54 chr3 112742246 112742644 + 3 NA intron (NR_110017, intron 1 of 4) intron (NR_110017, intron 1 of 4) 5356 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 626-137 chr8 85598676 85599072 + 3 NA Intergenic MER63D|DNA|hAT-Blackjack 56802 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 470-177 chr3 86671159 86671342 + 3 NA Intergenic Intergenic 189307 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 263-427 chr8 121980512 121980665 + 3 NA Intergenic L1MEc|LINE|L1 -339148 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 424-16 chr1 228198816 228199099 + 3 NA Intergenic Intergenic -9087 NM_052843 84033 Hs.650039 NM_052843 ENSG00000154358 OBSCN ARHGEF30|UNC89 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF protein-coding 440-278 chrX 97817512 97817763 + 3 NA Intergenic MER34C2|LTR|ERV1 -253102 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 919-24 chr8 81017435 81018148 + 3 NA intron (NM_018440, intron 3 of 8) MER5B|DNA|hAT-Charlie 94277 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 396-182 chr2 201501693 201501907 + 3 NA intron (NM_001168216, intron 11 of 12) L1M4|LINE|L1 50060 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 610-135 chr5 28029123 28029456 + 3 NA Intergenic L1M1|LINE|L1 258376 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 505-295 chr8 10278795 10278967 + 3 NA intron (NM_001199729, intron 4 of 6) intron (NM_001199729, intron 4 of 6) 183230 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 597-112 chr6 25725348 25725696 + 3 NA TTS (NM_170745) TTS (NM_170745) 1040 NM_170745 221613 Hs.406739 NM_170745 ENSG00000164508 HIST1H2AA H2AA|H2AFR|TH2A|bA317E16.2 histone cluster 1 H2A family member a protein-coding 279-188 chr2 106764963 106765085 + 3 NA Intergenic Intergenic 121004 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 456-284 chr6 131817054 131817290 + 3 NA intron (NM_006208, intron 1 of 24) intron (NM_006208, intron 1 of 24) 9152 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 497-292 chr8 126392182 126392376 + 3 NA Intergenic Intergenic 66784 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 698-66 chr4 160310518 160310831 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -532890 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 559-162 chr6 132175388 132175644 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 41538 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 636-150 chr8 122957990 122958332 + 3 NA intron (NM_001362797, intron 4 of 4) intron (NM_001362797, intron 4 of 4) 67611 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 434-180 chr3 36584959 36585149 + 3 NA Intergenic L1MA2|LINE|L1 154807 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 283-220 chr2 17353985 17354136 + 3 NA Intergenic Intergenic 164380 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 591-82 chr2 201853289 201853628 + 3 NA intron (NM_001366386, intron 9 of 13) intron (NM_001366386, intron 9 of 13) 46879 NM_001366386 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 305-89 chr11 11310413 11310641 + 3 NA intron (NM_001363464, intron 8 of 9) intron (NM_001363464, intron 8 of 9) 42723 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 360-119 chr14 56652630 56652883 + 3 NA Intergenic Intergenic 72958 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 461-231 chr6 51861542 51861744 + 3 NA intron (NM_138694, intron 48 of 66) intron (NM_138694, intron 48 of 66) 225970 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 377-125 chr14 65358076 65358348 + 3 NA Intergenic L1MA6|LINE|L1 -23029 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 469-243 chr6 53584595 53584802 + 3 NA Intergenic Intergenic -11423 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 405-111 chr17 76450245 76450484 + 3 NA intron (NM_022066, intron 1 of 17) intron (NM_022066, intron 1 of 17) 2788 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 998-18 chr8 16150880 16151354 + 3 NA intron (NM_002445, intron 6 of 8) intron (NM_002445, intron 6 of 8) 35155 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 557-21 chr10 85840776 85841077 + 3 NA intron (NM_017551, intron 8 of 15) L1PA13|LINE|L1 263195 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 1146-5 chr14 25829910 25830519 + 3 NA Intergenic Intergenic 723216 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 354-382 chr5 126135783 126135964 + 3 NA Intergenic Intergenic -43704 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 679-48 chr18 60845269 60845697 + 3 NA Intergenic Intergenic -472708 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 376-108 chr14 71659575 71659795 + 3 NA intron (NM_001354286, intron 10 of 24) intron (NM_001354286, intron 10 of 24) 73387 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 471-250 chr7 25798108 25798384 + 3 NA Intergenic Intergenic -8127 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 516-201 chr5 19257298 19257590 + 3 NA Intergenic Intergenic 628828 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 648-58 chr18 12802839 12803186 + 3 NA intron (NM_080423, intron 7 of 8) L1MA6|LINE|L1 37950 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 775-34 chr16 26112620 26112986 + 3 NA intron (NM_006040, intron 1 of 1) L1ME3F|LINE|L1 87566 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 431-238 chr5 164325415 164325647 + 3 NA Intergenic Intergenic 141871 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 599-48 chr18 12573286 12573667 + 3 NA intron (NM_020148, intron 2 of 15) L1MC2|LINE|L1 83256 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 179-116 chr8 62056208 62056299 + 3 NA Intergenic L1MCa|LINE|L1 166414 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 329-485 chr6 24849703 24849843 + 3 NA intron (NM_001286445, intron 11 of 21) intron (NM_001286445, intron 11 of 21) 27497 NM_015864 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 509-86 chr16 81071777 81071968 + 3 NA intron (NM_152337, intron 1 of 3) intron (NM_152337, intron 1 of 3) 5395 NM_152337 123775 Hs.658684 NM_152337 ENSG00000166455 C16orf46 - chromosome 16 open reading frame 46 protein-coding 616-28 chr12 16023751 16024176 + 3 NA intron (NM_015954, intron 6 of 8) L1MCa|LINE|L1 112631 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 574-54 chr17 51787243 51787623 + 3 NA intron (NM_001082533, intron 4 of 9) L1MA2|LINE|L1 352006 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 501-127 chr2 222204322 222204548 + 3 NA intron (NM_181457, intron 7 of 7) intron (NM_181457, intron 7 of 7) -93712 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 282-170 chr17 68886941 68887072 + 3 NA intron (NM_001288985, intron 26 of 39) intron (NM_001288985, intron 26 of 39) 68386 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 878-9 chr11 76814993 76815474 + 3 NA Intergenic AluSx|SINE|Alu 23481 NM_001318477 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 440-180 chr4 34284544 34284737 + 3 NA Intergenic L1M3|LINE|L1 -14893 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 357-137 chr15 97126184 97126378 + 3 NA Intergenic L1M4b|LINE|L1 342846 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 473-174 chr3 67245996 67246234 + 3 NA Intergenic Intergenic 20651 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 482-123 chr2 59470915 59471112 + 3 NA Intergenic L1ME1|LINE|L1 253305 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 520-124 chr18 12974554 12974863 + 3 NA intron (NM_031216, intron 5 of 8) MIRc|SINE|MIR -16654 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 662-99 chr8 118417467 118417780 + 3 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -203378 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 307-113 chr12 128878792 128878962 + 3 NA intron (NM_144669, intron 2 of 7) AluJo|SINE|Alu 25399 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 556-228 chr8 114987094 114987359 + 3 NA Intergenic AluJb|SINE|Alu 680787 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 928-23 chr4 108615431 108615775 + 3 NA intron (NR_026968, intron 1 of 3) L1M5|LINE|L1 4854 NR_026968 285456 Hs.683863 NM_182591 ENSG00000234492 RPL34-AS1 - RPL34 antisense RNA 1 (head to head) ncRNA 821-28 chr2 189943111 189943502 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 119423 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 297-19 chr1 95683534 95683715 + 3 NA Intergenic Intergenic 173508 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 447-292 chr9 72379167 72379364 + 3 NA Intergenic L1ME3G|LINE|L1 -14057 NM_001102420 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 310-548 chr9 34819975 34820130 + 3 NA Intergenic L1MC|LINE|L1 18534 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 443-77 chr12 133077314 133077500 + 3 NA Intergenic Intergenic -2796 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 333-46 chr1 248100456 248100582 + 3 NA 3' UTR (NM_175911, exon 3 of 3) 3' UTR (NM_175911, exon 3 of 3) -21617 NR_002141 388762 Hs.528509 NR_002141 OR2M1P JCG10|OR2M1|OST037 olfactory receptor family 2 subfamily M member 1 pseudogene pseudo 777-3 chr1 227670078 227670514 + 3 NA intron (NR_102302, intron 5 of 5) L1MA9|LINE|L1 27411 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 318-474 chr6 49282114 49282317 + 3 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat 181038 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 255-91 chr13 57765172 57765280 + 3 NA Intergenic Intergenic 133482 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 296-384 chr5 151928535 151928696 + 3 NA Intergenic MIR3|SINE|MIR -3764 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 487-287 chr8 83408804 83409030 + 3 NA TTS (NR_122034) TTS (NR_122034) 5159 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 1016-18 chr5 118295253 118295791 + 3 NA Intergenic Intergenic 12948 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 570-201 chr8 132253006 132253337 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -147906 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 363-4 chr1 46570548 46570757 + 3 NA TTS (NR_038403) TTS (NR_038403) -18995 NM_001322255 148930 Hs.350764 NM_182516 ENSG00000162456 KNCN Kino|L5 kinocilin protein-coding 337-534 chr8 63815105 63815257 + 3 NA Intergenic Intergenic 45751 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 489-217 chr5 156572121 156572403 + 3 NA intron (NM_001128209, intron 3 of 7) L1MB5|LINE|L1 245098 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 276-124 chr13 42877743 42877911 + 3 NA Intergenic MER67C|LTR|ERV1 -5083 NR_126388 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 323-56 chr10 61589060 61589222 + 3 NA Intergenic Intergenic -73788 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 455-39 chr10 113405672 113405936 + 3 NA Intergenic MIRb|SINE|MIR -145027 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 471-209 chr5 84471176 84471388 + 3 NA Intergenic (T)n|Simple_repeat|Simple_repeat -86402 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 439-82 chr13 39536757 39536989 + 3 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 66320 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 451-252 chr9 68454271 68454423 + 3 NA intron (NM_021965, intron 6 of 10) LTR33|LTR|ERVL 86520 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 805-2 chr1 71780394 71780774 + 3 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) 56428 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 406-39 chr10 75568223 75568456 + 3 NA intron (NM_001305581, intron 2 of 6) L2c|LINE|L2 15881 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 538-198 chr5 85230636 85230973 + 3 NA Intergenic L1M3b|LINE|L1 -845924 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 1387-5 chr3 79637191 79638074 + 3 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 129745 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 306-231 chr2 46501392 46501602 + 3 NA Intergenic L1ME4a|LINE|L1 21932 NM_001145051 388946 Hs.733348 NM_001145051 ENSG00000284701 TMEM247 - transmembrane protein 247 protein-coding 416-150 chr18 73895916 73896097 + 3 NA Intergenic Intergenic 251828 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 482-238 chr7 22548200 22548439 + 3 NA Intergenic LTR106_Mam|LTR|LTR -15018 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 456-71 chr12 127497374 127497658 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 138951 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 598-118 chr6 37543619 37543908 + 3 NA Intergenic Intergenic 11659 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 258-50 chr10 45502519 45502627 + 3 NA intron (NM_001282866, intron 2 of 7) L1MEf|LINE|L1 32798 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 455-220 chr5 60567100 60567298 + 3 NA Intergenic LTR37B|LTR|ERV1 -70913 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 584-36 chr12 33627958 33628301 + 3 NA Intergenic Intergenic -188310 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 373-123 chr14 84647620 84647821 + 3 NA Intergenic Intergenic -624212 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 744-79 chr9 28965457 28965797 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -76672 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 621-116 chr7 45174600 45174963 + 3 NA intron (NM_005856, intron 1 of 2) intron (NM_005856, intron 1 of 2) 16990 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 477-128 chr18 64905168 64905375 + 3 NA Intergenic Intergenic -645216 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 822-57 chr7 72061370 72061791 + 3 NA intron (NM_001363460, intron 3 of 5) L1MEf|LINE|L1 275811 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 456-337 chr9 30050801 30050976 + 3 NA Intergenic Intergenic 357566 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 383-236 chr22 26976253 26976434 + 3 NA Intergenic MLT2C1|LTR|ERVL 73051 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 393-104 chr14 68527160 68527314 + 3 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 101550 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 540-216 chr8 120732899 120733116 + 3 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -28246 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 463-290 chr8 112413319 112413514 + 3 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -230077 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 467-221 chr5 41228388 41228651 + 3 NA intron (NM_001115131, intron 1 of 17) L1MA8|LINE|L1 -14987 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 828-36 chr5 4234896 4235294 + 3 NA Intergenic Intergenic -538386 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 341-388 chr4 99297930 99298133 + 3 NA intron (NR_037884, intron 7 of 9) L1PB1|LINE|L1 -7046 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 638-87 chr3 77820507 77820855 + 3 NA Intergenic Intergenic 228282 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 631-34 chr13 97060560 97060852 + 3 NA Intergenic L1MC5a|LINE|L1 -65976 NM_001346195 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 447-104 chr18 47643759 47643922 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 263344 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 532-219 chr6 27930591 27930821 + 3 NA Intergenic Intergenic -18310 NM_033057 81697 Hs.307111 NM_033057 ENSG00000168131 OR2B2 OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10 olfactory receptor family 2 subfamily B member 2 protein-coding 744-54 chr5 22968445 22968864 + 3 NA Intergenic L1PA10|LINE|L1 -115310 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 575-158 chr5 141373072 141373399 + 3 NA promoter-TSS (NM_032086) promoter-TSS (NM_032086) -656 NM_018919 56109 Hs.368160 NM_018919 ENSG00000253731 PCDHGA6 PCDH-GAMMA-A6 protocadherin gamma subfamily A, 6 protein-coding 268-380 chr7 89905543 89905724 + 3 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -213767 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 597-46 chr14 55222099 55222374 + 3 NA Intergenic Intergenic -30651 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 430-74 chr13 83736535 83736729 + 3 NA Intergenic Intergenic 145761 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 519-199 chr6 86256701 86257037 + 3 NA Intergenic Intergenic -578136 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 482-284 chr8 130601700 130601959 + 3 NA Intergenic Intergenic -158155 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 725-55 chr7 46202572 46203034 + 3 NA Intergenic Intergenic -281531 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 264-447 chr9 133273060 133273229 + 3 NA intron (NM_020469, intron 1 of 6) intron (NM_020469, intron 1 of 6) 2057 NM_020469 28 Hs.654423 NM_020469 ENSG00000175164 ABO A3GALNT|A3GALT1|GTB|NAGAT ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase protein-coding 467-163 chr22 19666730 19666958 + 3 NA Intergenic Intergenic -47659 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 423-24 chr10 43006167 43006346 + 3 NA Intergenic L1MC3|LINE|L1 8693 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 1360-9 chr8 10094501 10095347 + 3 NA promoter-TSS (NM_001135671) promoter-TSS (NM_001135671) -727 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 593-23 chr11 42219562 42219936 + 3 NA intron (NR_038309, intron 4 of 5) L1MA3|LINE|L1 33941 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 454-345 chr9 110960160 110960378 + 3 NA intron (NM_001351417, intron 4 of 5) L1MA4A|LINE|L1 76511 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 357-492 chrX 62877807 62878065 + 3 NA Intergenic L1MA8|LINE|L1 473396 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 811-36 chr4 60915574 60916149 + 3 NA Intergenic L2c|LINE|L2 -6758 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 405-224 chr4 55205518 55205689 + 3 NA Intergenic Intergenic -80008 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 634-118 chr4 111050596 111050839 + 3 NA Intergenic AluYm1|SINE|Alu -190070 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 880-5 chr11 50493712 50494298 + 3 NA Intergenic HERVK11-int|LTR|ERVK 84858 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 843-28 chr20 54450465 54450904 + 3 NA Intergenic MamRep1151|LTR?|LTR? -24909 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 472-343 chr9 37074338 37074511 + 3 NA Intergenic L1ME3G|LINE|L1 -5472 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus like nucleoprotein 3, pseudogene pseudo 343-66 chr10 123975725 123975961 + 3 NA Intergenic L1ME4a|LINE|L1 -84036 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 562-40 chr11 127443360 127443754 + 3 NA Intergenic L3|LINE|CR1 172487 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 331-467 chr6 119927369 119927501 + 3 NA Intergenic MER21-int|LTR|ERVL -87744 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 383-247 chr3 43426201 43426413 + 3 NA intron (NM_001204831, intron 11 of 12) MER4D|LTR|ERV1 -74345 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 556-131 chr20 54560883 54561182 + 3 NA intron (NM_018431, intron 2 of 7) L2c|LINE|L2 85439 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 647 chr1 31476288 31476553 + 3 NA Intergenic L1PBa|LINE|L1 -23665 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LDC1P LINC01225 leucine decarboxylase 1, pseudogene pseudo 527-182 chr3 155869457 155869741 + 3 NA Intergenic Intergenic -1051 NM_003875 8833 Hs.591314 NM_003875 ENSG00000163655 GMPS GATD7 guanine monophosphate synthase protein-coding 340-175 chr15 80330386 80330549 + 3 NA intron (NR_033833, intron 1 of 2) L1ME4a|LINE|L1 11338 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 339-415 chr4 81624113 81624289 + 3 NA Intergenic Intergenic -152294 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 507-121 chr2 57416370 57416611 + 3 NA Intergenic Intergenic -491161 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 303-345 chr5 9120431 9120547 + 3 NA intron (NM_003966, intron 14 of 22) intron (NM_003966, intron 14 of 22) -66594 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 751-47 chr3 145085050 145085505 + 3 NA Intergenic L1ME1|LINE|L1 983908 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 494-202 chr4 59889703 59889938 + 3 NA Intergenic Intergenic 876247 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 608-108 chr4 54726768 54727103 + 3 NA intron (NM_000222, intron 9 of 20) intron (NM_000222, intron 9 of 20) 69007 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 283-432 chr8 52801950 52802097 + 3 NA Intergenic Intergenic -87557 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 377-68 chr11 55764212 55764430 + 3 NA Intergenic L1M5|LINE|L1 -9117 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 797-36 chr4 46561032 46561623 + 3 NA Intergenic Intergenic -171199 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 532-115 chr2 32962688 32962917 + 3 NA intron (NM_206943, intron 2 of 33) MER5A|DNA|hAT-Charlie 15849 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 586-118 chr5 42381365 42381712 + 3 NA Intergenic Intergenic -41901 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 447-13 chr1 192755896 192756160 + 3 NA Intergenic Intergenic 39700 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 558-46 chr12 114007592 114007858 + 3 NA Intergenic LTR16E2|LTR|ERVL -41400 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 532-145 chr20 48087211 48087458 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -97217 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 498-153 chr21 16499359 16499688 + 3 NA intron (NR_136546, intron 2 of 2) (AACC)n|Simple_repeat|Simple_repeat -36049 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 574-50 chr16 65417751 65418032 + 3 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 158409 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 369-250 chr21 29565110 29565298 + 3 NA intron (NM_000830, intron 14 of 16) intron (NM_000830, intron 14 of 16) -30836 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 590-70 chr19 15945331 15945836 + 3 NA Intergenic L1M5|LINE|L1 -3425 NM_001004465 126541 Hs.553579 NM_001004465 ENSG00000176231 OR10H4 OR19-28 olfactory receptor family 10 subfamily H member 4 protein-coding 875-41 chrX 73670675 73671085 + 3 NA intron (NM_001300884, intron 3 of 4) L1M2|LINE|L1 107732 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 539-179 chr6 55467172 55467474 + 3 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 111891 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 462-77 chr14 42254955 42255249 + 3 NA Intergenic Intergenic 648246 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 466-69 chr12 133111864 133112149 + 3 NA Intergenic L2b|LINE|L2 18467 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 264-420 chr8 95906767 95906878 + 3 NA Intergenic L1ME4b|LINE|L1 41526 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 454-343 chr9 96194100 96194298 + 3 NA Intergenic Intergenic -52264 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 470-121 chr2 34116087 34116269 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 48952 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 272-269 chr3 68338479 68338648 + 3 NA intron (NM_001252216, intron 2 of 4) MIRb|SINE|MIR -162074 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 483-89 chr17 22525617 22525823 + 3 NA Intergenic Intergenic 2609 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 262-373 chr6 64724018 64724111 + 3 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -577354 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 675-91 chr7 114864626 114864893 + 3 NA Intergenic Intergenic -57395 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 252-160 chr18 2588589 2588740 + 3 NA intron (NM_006101, intron 8 of 16) intron (NM_006101, intron 8 of 16) 17107 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 437-123 chr2 21457609 21457832 + 3 NA Intergenic L1ME2|LINE|L1 252932 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 325-162 chr14 43915894 43916135 + 3 NA Intergenic L1MA3|LINE|L1 591269 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 446-184 chr3 53034921 53035155 + 3 NA intron (NM_016329, intron 1 of 20) intron (NM_016329, intron 1 of 20) 11035 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 490-80 chr13 90449685 90449953 + 3 NA Intergenic L1MEg2|LINE|L1 -43469 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 489-92 chr15 69923721 69923941 + 3 NA Intergenic L1MEd|LINE|L1 88597 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 416-137 chr16 85968808 85968981 + 3 NA Intergenic AluJb|SINE|Alu 50547 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 700-69 chr4 12880910 12881262 + 3 NA Intergenic Intergenic 603254 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 548-210 chr7 63046927 63047287 + 3 NA Intergenic Intergenic 256949 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 739-40 chr2 129132996 129133483 + 3 NA Intergenic LOR1-int|LTR|ERV1 140652 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 464-90 chr17 52004781 52005018 + 3 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 153815 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 582-119 chr5 41547734 41548048 + 3 NA Intergenic Intergenic -37290 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 251-198 chr20 9638932 9639132 + 3 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -124034 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 186-131 chr5 101519265 101519328 + 3 NA Intergenic Intergenic -616014 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 456-186 chr21 31390549 31390853 + 3 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -46347 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 716-4 chr1 209500038 209500501 + 3 NA Intergenic L1M2a|LINE|L1 68136 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 526-143 chr2 170562778 170563031 + 3 NA intron (NM_001083615, intron 31 of 33) intron (NM_001083615, intron 31 of 33) 151663 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 378-445 chr8 132522732 132522972 + 3 NA Intergenic Intergenic 38627 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 413-84 chr14 59531561 59531803 + 3 NA intron (NM_001164399, intron 14 of 19) intron (NM_001164399, intron 14 of 19) 45130 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 488-190 chr4 52812078 52812248 + 3 NA intron (NR_040106, intron 4 of 4) L2a|LINE|L2 22169 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 389-169 chr2 62361328 62361541 + 3 NA Intergenic Intergenic 144761 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 481-12 chr1 198825755 198825936 + 3 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) 33137 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 350-90 chr12 26135909 26136064 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -10949 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 765-11 chr11 97661441 97661828 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 1153209 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1027-11 chr3 88595708 88596201 + 3 NA Intergenic Intergenic 257498 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 541-229 chr8 41395841 41396090 + 3 NA Intergenic Intergenic -30690 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 739-58 chr5 45187820 45188249 + 3 NA Intergenic Intergenic 379087 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 772-6 chr1 112081290 112081736 + 3 NA Intergenic Intergenic 90977 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 637-4 chr1 94573332 94573694 + 3 NA Intergenic L1PA11|LINE|L1 29811 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 585-100 chr3 114513662 114513971 + 3 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 60223 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 1034-18 chr8 120024570 120025152 + 3 NA intron (NM_022783, intron 8 of 8) MLT1J|LTR|ERVL-MaLR -100241 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 661-41 chr19 41689538 41689871 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -1434 NM_001291485 1087 Hs.74466 NM_006890 ENSG00000007306 CEACAM7 CGM2 carcinoembryonic antigen related cell adhesion molecule 7 protein-coding 623-40 chr16 52851212 52851543 + 3 NA Intergenic L1M2|LINE|L1 201496 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 318-483 chr6 102012201 102012346 + 3 NA intron (NM_001166247, intron 13 of 16) L1MC1|LINE|L1 613288 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 1391-4 chr5 134953542 134954681 + 3 NA intron (NM_032151, intron 2 of 3) AluJr|SINE|Alu -13796 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 536-245 chr8 142350281 142350627 + 3 NA intron (NM_001366903, intron 2 of 9) L1ME3E|LINE|L1 52728 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 816-34 chr4 156733077 156733420 + 3 NA Intergenic L1MDa|LINE|L1 238551 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 526-33 chr11 17686363 17686724 + 3 NA Intergenic Intergenic 10396 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 619-89 chr3 195595499 195595789 + 3 NA Intergenic Intergenic -11704 NM_001647 347 Hs.522555 NM_001647 ENSG00000189058 APOD - apolipoprotein D protein-coding 450-2 chr1 34443891 34444074 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 225712 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 490-138 chr2 53649653 53649844 + 3 NA Intergenic LTR8A|LTR|ERV1 -118035 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 821-42 chr5 3045963 3046319 + 3 NA Intergenic Intergenic 128287 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 481-189 chr3 1629693 1629899 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -469007 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 468-285 chr6 119824412 119824679 + 3 NA intron (NR_134600, intron 2 of 3) L1MEc|LINE|L1 -190634 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 972-23 chr7 53998892 53999311 + 3 NA Intergenic L1MB8|LINE|L1 -187170 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 442-24 chr10 31777389 31777591 + 3 NA Intergenic L1MB4|LINE|L1 131436 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 581-97 chr3 29646083 29646472 + 3 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 287879 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 477-125 chr18 55893498 55893738 + 3 NA intron (NR_110755, intron 3 of 3) intron (NR_110755, intron 3 of 3) 26581 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 679-67 chr22 24859843 24860114 + 3 NA intron (NM_001098498, intron 9 of 23) intron (NM_001098498, intron 9 of 23) 53757 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 599-18 chr10 107536335 107536730 + 3 NA Intergenic Intergenic -371826 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 1104-4 chr2 78569092 78569567 + 3 NA Intergenic Intergenic 23798 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 491-218 chr5 130800484 130800830 + 3 NA Intergenic L1MA9|LINE|L1 364599 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 539-178 chr6 55084039 55084362 + 3 NA Intergenic Intergenic -22260 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 265-95 chr13 87085949 87086103 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 174106 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 572-17 chr10 54123961 54124323 + 3 NA intron (NM_001354411, intron 16 of 34) L1PA16|LINE|L1 -362088 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 494-159 chr21 38186254 38186448 + 3 NA Intergenic L1MEb|LINE|L1 -19805 NR_027695 259234 Hs.147695 NM_148676 ENSG00000233316 DSCR10 - Down syndrome critical region 10 ncRNA 657-10 chr1 209499549 209499879 + 3 NA Intergenic L1MA4|LINE|L1 67581 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 764-21 chr13 39181854 39182148 + 3 NA Intergenic L1MC5a|LINE|L1 143545 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 361-204 chr2 21961398 21961668 + 3 NA Intergenic Intergenic -250881 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 549-176 chr6 8291456 8291762 + 3 NA Intergenic L1ME1|LINE|L1 143936 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 733-82 chr8 124982771 124983243 + 3 NA Intergenic Intergenic 9712 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 521-194 chr5 64279163 64279499 + 3 NA intron (NM_001113561, intron 5 of 7) L2|LINE|L2 113488 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 512-129 chr2 126333490 126333818 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -215669 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 452-246 chr7 43529418 43529630 + 3 NA intron (NM_001287059, intron 22 of 27) intron (NM_001287059, intron 22 of 27) -6982 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 310-392 chr5 21086379 21086500 + 3 NA Intergenic Intergenic -373041 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 391-258 chr4 49109457 49109692 + 3 NA Intergenic (CATTC)n|Satellite|Satellite 122932 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 412-117 chr17 33865819 33865989 + 3 NA intron (NM_001094, intron 1 of 9) L1ME3|LINE|L1 290902 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 483-121 chr2 118626125 118626376 + 3 NA Intergenic L1M4|LINE|L1 -23284 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 281-409 chr7 11672775 11672968 + 3 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 159327 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 521-234 chr7 53050692 53050978 + 3 NA Intergenic Intergenic 15202 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 462-147 chr2 144108281 144108472 + 3 NA intron (NM_001354355, intron 7 of 13) AluY|SINE|Alu 103203 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 550-124 chr2 174496965 174497383 + 3 NA Intergenic Intergenic -10086 NM_001267051 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 595-44 chr13 48923824 48924236 + 3 NA Intergenic Intergenic -51882 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 1045-9 chr2 74754318 74754911 + 3 NA Intergenic Intergenic -78041 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 366-184 chr2 4584690 4584974 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 71390 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 486-315 chr9 103158195 103158368 + 3 NA intron (NR_121578, intron 8 of 9) L1P4a|LINE|L1 162948 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 528-37 chr10 82172387 82172695 + 3 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 60379 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 958-6 chr10 64014758 64015196 + 3 NA Intergenic LTR52|LTR|ERVL -493087 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 340-552 chr8 122959338 122959501 + 3 NA intron (NM_001362797, intron 4 of 4) (TGAA)n|Simple_repeat|Simple_repeat 66353 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 487-312 chrX 6577097 6577362 + 3 NA Intergenic Intergenic -42111 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 1042-11 chr20 53956111 53956642 + 3 NA intron (NM_001366297, intron 7 of 8) MLT1A|LTR|ERVL-MaLR -80667 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 515-60 chr13 88511225 88511451 + 3 NA Intergenic Intergenic -29491 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 350-3 chr1 61511984 61512163 + 3 NA Intergenic MIR|SINE|MIR -142169 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 498-221 chr5 71856268 71856471 + 3 NA Intergenic L1MEc|LINE|L1 137094 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 315-272 chr20 11027966 11028132 + 3 NA intron (NR_146878, intron 2 of 3) intron (NR_146878, intron 2 of 3) 1505 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 649-10 chr11 38808297 38808627 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 159604 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 527-115 chr19 9282240 9282551 + 3 NA Intergenic Intergenic 27443 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 562-31 chr11 25706465 25706807 + 3 NA Intergenic Intergenic -482487 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 331-476 chr6 155452740 155452959 + 3 NA intron (NM_015718, intron 4 of 13) intron (NM_015718, intron 4 of 13) 2990 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 458-23 chr10 75285770 75285938 + 3 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -10529 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 601-71 chr2 31452215 31452424 + 3 NA Intergenic L1M1|LINE|L1 -37577 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 471-178 chr3 190766443 190766635 + 3 NA Intergenic Intergenic 96155 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 610-130 chr5 5077158 5077567 + 3 NA intron (NR_134266, intron 1 of 1) MER4D|LTR|ERV1 949 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 191-115 chr2 202195916 202196036 + 3 NA intron (NM_001277372, intron 21 of 23) L1MA5|LINE|L1 42621 NM_001005781 7341 Hs.81424 NM_003352 ENSG00000116030 SUMO1 DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1 small ubiquitin like modifier 1 protein-coding 849-17 chr16 10409331 10409752 + 3 NA intron (NM_024997, intron 1 of 11) AluY|SINE|Alu 23480 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 596-46 chr12 40497523 40497829 + 3 NA intron (NM_173600, intron 59 of 173) intron (NM_173600, intron 59 of 173) 104282 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 731-39 chr2 48092134 48092530 + 3 NA Intergenic Intergenic -186539 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 710-39 chr19 36890119 36890506 + 3 NA 3' UTR (NM_001171979, exon 6 of 6) 3' UTR (NM_001171979, exon 6 of 6) 25727 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 425-26 chr10 8163184 8163471 + 3 NA Intergenic AluSc|SINE|Alu 104978 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 377-237 chr2 212149410 212149580 + 3 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 276865 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 509-195 chr5 64046815 64047065 + 3 NA Intergenic L1M1|LINE|L1 -84648 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 529-154 chr4 32634274 32634569 + 3 NA Intergenic L1PA7|LINE|L1 283383 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 468-206 chr3 96157230 96157398 + 3 NA Intergenic L1PA12|LINE|L1 -202650 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 540-32 chr10 107075177 107075459 + 3 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 89388 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 504-16 chr1 220973940 220974250 + 3 NA Intergenic HAL1|LINE|L1 -93955 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 542-45 chr12 38814799 38815137 + 3 NA intron (NM_153634, intron 6 of 19) intron (NM_153634, intron 6 of 19) 90623 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 547-32 chr11 30175928 30176184 + 3 NA Intergenic Intergenic -54958 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 590-131 chr5 43879291 43879684 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -276257 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 507-272 chr9 35758295 35758566 + 3 NA 3' UTR (NM_001080496, exon 9 of 9) 3' UTR (NM_001080496, exon 9 of 9) -4154 NM_001044264 692094 Hs.571601 NM_001044264 ENSG00000215183 MSMP PSMP microseminoprotein, prostate associated protein-coding 405-103 chr16 62960308 62960528 + 3 NA Intergenic Intergenic -923980 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 336-21 chr1 68201123 68201274 + 3 NA intron (NM_024911, intron 1 of 11) intron (NM_024911, intron 1 of 11) -17588 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 480-79 chr14 66114965 66115254 + 3 NA Intergenic Intergenic -371262 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 817-16 chr15 38861070 38861411 + 3 NA Intergenic MLT2C1|LTR|ERVL 164642 NR_160786 633-26 chr11 98026707 98027049 + 3 NA Intergenic Intergenic -994071 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 555-93 chr2 59495654 59495951 + 3 NA Intergenic L1PA16|LINE|L1 278094 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 422-168 chr20 52197003 52197277 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -5155 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 908-30 chr3 156745942 156746466 + 3 NA Intergenic Intergenic 65817 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 259-132 chr15 39462807 39463006 + 3 NA Intergenic Intergenic -118173 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 239-44 chr10 90379014 90379190 + 3 NA Intergenic Intergenic 161703 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 473-70 chr13 63608474 63608686 + 3 NA Intergenic L1M2|LINE|L1 -128855 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 532-276 chr8 107348905 107349297 + 3 NA intron (NM_001199859, intron 1 of 8) MLT1K|LTR|ERVL-MaLR -12586 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 777-60 chr6 12243697 12244104 + 3 NA Intergenic Intergenic -46461 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 566-20 chr11 29020909 29021141 + 3 NA Intergenic L1MC5a|LINE|L1 -543477 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 850-41 chr6 34002699 34003374 + 3 NA Intergenic Intergenic -2985 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 573-191 chr8 46709725 46710022 + 3 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -92230 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 449-291 chr9 28604905 28605090 + 3 NA intron (NM_152570, intron 2 of 6) MIR|SINE|MIR 114308 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 746-70 chr7 22617980 22618340 + 3 NA Intergenic L1MEg|LINE|L1 47373 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 429-190 chr3 44496472 44496675 + 3 NA Intergenic Intergenic 14044 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 500-209 chr4 83637390 83637632 + 3 NA Intergenic Intergenic 101403 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 792-44 chr4 172967565 172968026 + 3 NA intron (NM_001034845, intron 10 of 12) MER44A|DNA|TcMar-Tigger -201016 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 516-40 chr11 115926925 115927114 + 3 NA Intergenic Intergenic -166819 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 515-13 chr1 216130447 216130651 + 3 NA intron (NM_206933, intron 21 of 71) (TA)n|Simple_repeat|Simple_repeat 58084 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 378-154 chr16 6546084 6546250 + 3 NA intron (NM_018723, intron 2 of 15) MER30|DNA|hAT-Charlie -227642 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 556-214 chr7 154544998 154545269 + 3 NA intron (NR_157196, intron 4 of 25) intron (NR_157196, intron 4 of 25) 239974 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 540-25 chr10 12831217 12831492 + 3 NA 3' UTR (NM_153498, exon 11 of 11) 3' UTR (NM_153498, exon 11 of 11) -106001 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 437-265 chr8 25797665 25797843 + 3 NA Intergenic Intergenic 247659 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 840-46 chr7 86106536 86106868 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -537207 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 387-199 chr20 22059489 22059689 + 3 NA intron (NR_038394, intron 1 of 3) intron (NR_038394, intron 1 of 3) 5499 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 556-229 chr8 115942002 115942287 + 3 NA Intergenic Intergenic -273169 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 392-328 chr8 104540194 104540380 + 3 NA intron (NM_013437, intron 1 of 6) MLT1B|LTR|ERVL-MaLR 48737 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 615-126 chr7 33600999 33601310 + 3 NA intron (NR_145411, intron 22 of 23) MIRb|SINE|MIR -303761 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 1255-8 chr2 132465590 132466295 + 3 NA intron (NM_001508, intron 1 of 1) L1ME4a|LINE|L1 32231 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 394-102 chr14 52207881 52208126 + 3 NA Intergenic Intergenic -59695 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 742-38 chr2 74784229 74784761 + 3 NA Intergenic Intergenic -48160 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 901-39 chr8 136840533 136841106 + 3 NA intron (NR_147196, intron 4 of 5) L1MEg|LINE|L1 310021 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 529-43 chr12 14286529 14286815 + 3 NA Intergenic Intergenic -78960 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 535-97 chr16 51198869 51199176 + 3 NA intron (NR_039672, intron 5 of 6) LTR16C|LTR|ERVL -47750 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 391-33 chr10 36517220 36517413 + 3 NA Intergenic Intergenic -608541 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 600-78 chr21 21599139 21599468 + 3 NA Intergenic L1P4|LINE|L1 138016 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 353-195 chr17 71954897 71955107 + 3 NA Intergenic Intergenic 70977 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 539-46 chr12 6258120 6258479 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -52137 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 632-101 chr5 154537373 154537643 + 3 NA Intergenic L1MA9|LINE|L1 58564 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 491-118 chr2 65475997 65476234 + 3 NA Intergenic Intergenic -43516 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 655-74 chr21 30161384 30161794 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 5216 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 644-18 chr14 29196923 29197430 + 3 NA Intergenic Intergenic -411389 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 612-135 chr7 98258326 98258708 + 3 NA Intergenic AluSx|SINE|Alu -6285 NM_015395 25851 Hs.592281 NM_015395 ENSG00000205356 TECPR1 - tectonin beta-propeller repeat containing 1 protein-coding 465-34 chr10 104082434 104082675 + 3 NA intron (NM_000494, intron 1 of 55) intron (NM_000494, intron 1 of 55) 3326 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 622-158 chrX 89126232 89126481 + 3 NA Intergenic L1PA13|LINE|L1 379131 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 566-2 chr1 42101117 42101420 + 3 NA Intergenic L1MB3|LINE|L1 -52142 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 362-390 chr6 152932433 152932628 + 3 NA Intergenic Intergenic 50511 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 752-53 chr3 165938648 165939120 + 3 NA Intergenic AluSx1|SINE|Alu -101461 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 327-377 chr4 149696231 149696447 + 3 NA intron (NM_001363507, intron 5 of 13) L2a|LINE|L2 119504 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 591-19 chr10 129653049 129653384 + 3 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 185975 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 410-11 chr1 117772543 117772742 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 156979 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 487-208 chr4 63030627 63030961 + 3 NA Intergenic Intergenic -869029 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 566-26 chr11 130734210 130734423 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 61360 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 554-104 chr19 29164918 29165279 + 3 NA Intergenic Intergenic 48053 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 538-55 chr12 103188033 103188362 + 3 NA Intergenic Intergenic 36355 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 625-54 chr2 159337092 159337454 + 3 NA intron (NM_001329858, intron 32 of 36) intron (NM_001329858, intron 32 of 36) -50570 NM_001128212 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 567-52 chr14 49238254 49238658 + 3 NA Intergenic L1PA16|LINE|L1 347924 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 295-502 chr9 92168338 92168492 + 3 NA Intergenic L1M4|LINE|L1 22741 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 801-6 chr11 127919695 127920119 + 3 NA Intergenic LTR8B|LTR|ERV1 -288859 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 381-186 chr2 38164479 38164642 + 3 NA intron (NR_027252, intron 2 of 2) (AT)n|Simple_repeat|Simple_repeat 33455 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 359-101 chr11 115868468 115868710 + 3 NA Intergenic L1MA4A|LINE|L1 -108389 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 595-132 chr5 79813886 79814150 + 3 NA Intergenic L1ME3A|LINE|L1 -122561 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 373-135 chr15 95180913 95181109 + 3 NA Intergenic Intergenic 146089 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 454-314 chr8 105612874 105613211 + 3 NA intron (NM_001362837, intron 4 of 7) L2b|LINE|L2 293499 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 430-78 chr14 25263177 25263368 + 3 NA Intergenic Intergenic -212975 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 1207-5 chr2 35767826 35768484 + 3 NA Intergenic L1PA4|LINE|L1 296750 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 434-204 chr4 39096342 39096540 + 3 NA intron (NM_199039, intron 4 of 9) L1ME4a|LINE|L1 34209 NM_015990 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 643-113 chr7 41720645 41720881 + 3 NA intron (NR_027118, intron 2 of 3) MIRb|SINE|MIR -17673 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 428-99 chr18 4538995 4539237 + 3 NA Intergenic L1ME3A|LINE|L1 -83809 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 451-61 chr14 46358232 46358417 + 3 NA intron (NR_102702, intron 3 of 3) L1MA6|LINE|L1 -113035 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 445-250 chr7 49825715 49825909 + 3 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 50479 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 349-239 chr2 16296375 16296552 + 3 NA Intergenic L2c|LINE|L2 246036 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 406-249 chr5 156618129 156618413 + 3 NA intron (NM_001128209, intron 5 of 7) intron (NM_001128209, intron 5 of 7) -232024 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 584-40 chr14 40811020 40811250 + 3 NA Intergenic Intergenic -143576 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 352-55 chr10 91454133 91454263 + 3 NA intron (NM_182765, intron 2 of 20) L1MD1|LINE|L1 43913 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 669-108 chr7 107100209 107100522 + 3 NA intron (NM_002736, intron 2 of 10) L1M4a1|LINE|L1 55660 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 472-85 chr14 59671310 59671577 + 3 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -24423 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 333-394 chr4 63332195 63332365 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1077170 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 628-94 chr4 34148745 34149187 + 3 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) -109073 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 602-11 chr10 70619867 70620242 + 3 NA Intergenic L1M8|LINE|L1 -17266 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 735-51 chr21 21026983 21027259 + 3 NA intron (NM_001352595, intron 1 of 14) AluSz|SINE|Alu 28712 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 674-8 chr1 202878117 202878481 + 3 NA TTS (NM_002871) TTS (NM_002871) 10850 NM_002871 5877 Hs.90875 NM_002871 ENSG00000183155 RABIF MSS4|RASGFR3|RASGRF3 RAB interacting factor protein-coding 495-70 chr15 88281623 88281929 + 3 NA Intergenic Intergenic -25037 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 190-56 chr14 58770003 58770115 + 3 NA Intergenic Intergenic -58229 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 1188 chr1 247154840 247155520 + 3 NA 3' UTR (NM_001297568, exon 4 of 4) 3' UTR (NM_001297568, exon 4 of 4) 16837 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 344-434 chr6 122131999 122132202 + 3 NA Intergenic Intergenic -267451 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 732-32 chr17 28928003 28928299 + 3 NA intron (NM_001033561, intron 2 of 14) MLT1H1|LTR|ERVL-MaLR 1876 NR_110803 101927018 Hs.665702 NR_110803 ENSG00000265845 LOC101927018 - uncharacterized LOC101927018 ncRNA 734-51 chr3 181981406 181981875 + 3 NA intron (NR_104146, intron 5 of 7) intron (NR_104146, intron 5 of 7) 29276 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 1129-19 chr7 19955144 19955812 + 3 NA intron (NR_110114, intron 5 of 5) MSTA-int|LTR|ERVL-MaLR -181861 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 295-79 chr11 87821870 87822028 + 3 NA Intergenic L1ME2|LINE|L1 -102538 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 209-139 chr19 29357819 29357929 + 3 NA intron (NR_040029, intron 9 of 9) L1MA8|LINE|L1 -144723 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 343-70 chr11 19222082 19222256 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 18776 NM_024680 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 989-19 chr4 122254658 122255160 + 3 NA exon (NM_015312, exon 37 of 84) exon (NM_015312, exon 37 of 84) 84306 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 527-241 chr7 27020514 27020787 + 3 NA Intergenic Intergenic 75350 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 884-20 chr2 85831800 85832264 + 3 NA Intergenic AluSz6|SINE|Alu 16902 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 471-84 chr14 70104406 70104603 + 3 NA intron (NM_033262, intron 2 of 7) L1M4|LINE|L1 -24287 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 427-241 chr7 31041965 31042127 + 3 NA Intergenic Intergenic -10262 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 483-267 chr8 88034263 88034470 + 3 NA 3' UTR (NM_005941, exon 10 of 10) 3' UTR (NM_005941, exon 10 of 10) -160351 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 562-88 chr18 67723168 67723456 + 3 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 91510 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 625-53 chr2 156238515 156238857 + 3 NA intron (NR_110250, intron 1 of 3) L1ME4c|LINE|L1 16245 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 490-104 chr16 35800220 35800425 + 3 NA Intergenic HERVK22-int|LTR|ERVK 53770 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 454-66 chr12 9254883 9255085 + 3 NA intron (NR_137434, intron 4 of 6) intron (NR_137434, intron 4 of 6) 14981 NR_137436 100499405 Hs.182314 NR_036466 ENSG00000237248 LINC00987 - long intergenic non-protein coding RNA 987 ncRNA 886-31 chr6 63215377 63215827 + 3 NA Intergenic Intergenic 104375 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 304-368 chr3 196552132 196552287 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 16345 NM_001345917 348793 Hs.385865 NM_182627 ENSG00000185798 WDR53 - WD repeat domain 53 protein-coding 669-43 chr18 4876369 4876663 + 3 NA Intergenic L1MEg|LINE|L1 -204666 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1045-4 chr14 69163106 69163631 + 3 NA Intergenic L1MA2|LINE|L1 -10171 NM_001284206 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 357-283 chr3 125170903 125171109 + 3 NA intron (NM_001195483, intron 4 of 12) intron (NM_001195483, intron 4 of 12) -19454 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 388-2 chr1 24388824 24389016 + 3 NA intron (NM_178122, intron 2 of 7) MIR3|SINE|MIR -24567 NM_001322854 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 507-97 chr16 49143678 49143955 + 3 NA Intergenic Intergenic 138022 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 353-399 chr5 8972962 8973128 + 3 NA Intergenic L1MA4A|LINE|L1 80850 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 568-140 chr3 169901721 169901973 + 3 NA Intergenic AluJb|SINE|Alu -9725 NR_130713 344658 Hs.439922 NM_182610 ENSG00000187033 SAMD7 - sterile alpha motif domain containing 7 protein-coding 466-58 chr12 18648774 18648979 + 3 NA TTS (NM_004570) TTS (NM_004570) 88633 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 545-170 chr5 1962591 1962923 + 3 NA Intergenic Intergenic 75426 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 547-210 chr6 156512213 156512408 + 3 NA Intergenic Intergenic 133560 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 525-213 chr5 175198922 175199155 + 3 NA Intergenic Intergenic -203307 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 507-75 chr13 79439605 79439856 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie 33421 NR_038991 100505538 Hs.600720 NR_038991 ENSG00000227354 RBM26-AS1 - RBM26 antisense RNA 1 ncRNA 607-28 chr11 114838982 114839279 + 3 NA Intergenic L1MEd|LINE|L1 160603 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 385-110 chr15 56357409 56357671 + 3 NA Intergenic L1ME1|LINE|L1 -7884 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 393-293 chr5 166344259 166344507 + 3 NA Intergenic Intergenic 581987 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 448-305 chrX 47939807 47939968 + 3 NA Intergenic L1MC4a|LINE|L1 64102 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 702-7 chr10 36190936 36191222 + 3 NA Intergenic L1MEd|LINE|L1 412777 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 648-40 chr14 63082323 63082745 + 3 NA Intergenic L1MA4A|LINE|L1 -37076 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 636-76 chr2 78443342 78443801 + 3 NA Intergenic Intergenic -101960 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 407-12 chr1 165703346 165703518 + 3 NA intron (NR_036683, intron 2 of 3) AluJr|SINE|Alu 4682 NR_036683 440700 Hs.568703 NR_036683 ENSG00000215838 LOC440700 - carbonic anhydrase 14 pseudogene pseudo 494-248 chr6 63613322 63613622 + 3 NA Intergenic Intergenic -22330 NM_001370350 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 610-54 chr15 33358803 33359127 + 3 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 47998 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 297-117 chr13 42317674 42317886 + 3 NA intron (NM_016248, intron 12 of 12) MIR|SINE|MIR 45628 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 647-16 chr11 97813705 97814067 + 3 NA Intergenic Intergenic -1207063 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 279-269 chr3 110607703 110607885 + 3 NA Intergenic L1M4c|LINE|L1 462165 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 560-23 chr10 75585746 75586044 + 3 NA intron (NM_001305581, intron 2 of 6) L1MB1|LINE|L1 33437 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 514-170 chr20 19451141 19451323 + 3 NA intron (NM_020689, intron 2 of 16) MER91A|DNA|hAT-Tip100 -166636 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 372-467 chr7 113409596 113409811 + 3 NA Intergenic Intergenic -291121 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 669-39 chr17 61864478 61864824 + 3 NA TTS (NM_020748) TTS (NM_020748) -1092 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 536-94 chr17 57405214 57405477 + 3 NA intron (NM_001322250, intron 6 of 13) MER58A|DNA|hAT-Charlie 118252 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 542-86 chr19 42641245 42641444 + 3 NA intron (NR_073180, intron 2 of 2) intron (NR_073180, intron 2 of 2) -46420 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 784-45 chr4 30375946 30376368 + 3 NA Intergenic Intergenic -344212 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 379-157 chr2 52600840 52601003 + 3 NA Intergenic Intergenic 101694 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 377-283 chr4 33914963 33915240 + 3 NA intron (NR_125902, intron 4 of 4) MER66-int|LTR|ERV1 124792 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 480-305 chr8 135921026 135921327 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 463720 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1171-3 chr14 76019665 76020293 + 3 NA intron (NM_001102564, intron 2 of 8) L1M2|LINE|L1 34216 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 492-249 chr8 4470052 4470260 + 3 NA intron (NM_033225, intron 2 of 69) L2|LINE|L2 524758 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 331-152 chr14 52484489 52484668 + 3 NA intron (NM_001160047, intron 12 of 20) Tigger3b|DNA|TcMar-Tigger 67927 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 424-259 chr7 53874594 53874836 + 3 NA Intergenic L1PB2|LINE|L1 -62784 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 687-5 chr1 43327601 43327953 + 3 NA Intergenic L1MB8|LINE|L1 -10027 NM_005373 4352 Hs.82906 NM_005373 ENSG00000117400 MPL C-MPL|CD110|MPLV|THCYT2|THPOR|TPOR MPL proto-oncogene, thrombopoietin receptor protein-coding 319-128 chr13 85444183 85444403 + 3 NA intron (NR_046989, intron 1 of 3) L3|LINE|CR1 80690 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 513-236 chr5 179058694 179059001 + 3 NA Intergenic L1M2|LINE|L1 -1526 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 746-59 chr5 28545176 28545534 + 3 NA Intergenic L1PA13|LINE|L1 -257690 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 509-8 chr1 95704873 95705157 + 3 NA Intergenic L1M2|LINE|L1 194899 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 389-400 chrX 99831088 99831281 + 3 NA Intergenic L1PA13|LINE|L1 579089 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 402-214 chr3 104902399 104902545 + 3 NA Intergenic L1M4c|LINE|L1 -464241 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 262-283 chr3 103502404 103502593 + 3 NA Intergenic Intergenic 21618 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 591-170 chr8 135359906 135360301 + 3 NA Intergenic Intergenic -97353 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 670-24 chr11 92423659 92423923 + 3 NA intron (NM_001008781, intron 1 of 24) MLT2C1|LTR|ERVL 71695 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 457-225 chr7 26481593 26481842 + 3 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) 57108 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 523-94 chr16 26992240 26992587 + 3 NA Intergenic Intergenic -74514 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 356-20 chr1 167475992 167476172 + 3 NA intron (NM_000734, intron 1 of 7) intron (NM_000734, intron 1 of 7) 42447 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 614-61 chr2 186474272 186474652 + 3 NA Intergenic L1PREC2|LINE|L1 -11798 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 677-11 chr10 52202361 52202623 + 3 NA intron (NM_001098512, intron 9 of 17) L1PA15|LINE|L1 111636 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 666-20 chr12 26364316 26364629 + 3 NA intron (NM_002223, intron 55 of 56) MIRc|SINE|MIR 168899 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 492-133 chr2 106773164 106773379 + 3 NA Intergenic MER4A1|LTR|ERV1 112757 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 589-48 chr18 12778170 12778460 + 3 NA Intergenic Intergenic -28893 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 465-137 chr2 140171843 140172042 + 3 NA Intergenic L2b|LINE|L2 414743 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 469-132 chr2 72043247 72043543 + 3 NA Intergenic L1MEh|LINE|L1 104467 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 372-379 chr4 143010279 143010563 + 3 NA Intergenic L1MD2|LINE|L1 -163886 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 476-53 chr11 99256492 99256738 + 3 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 235666 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 553-9 chr1 190856584 190856878 + 3 NA Intergenic L1PA13|LINE|L1 231841 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 909-16 chr2 124662307 124662735 + 3 NA intron (NM_130773, intron 13 of 23) MIR|SINE|MIR 637234 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 395-156 chr2 7323196 7323369 + 3 NA Intergenic Intergenic -97979 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 275-389 chr9 127607740 127607908 + 3 NA Intergenic Intergenic -4453 NM_001032221 6812 Hs.288229 NM_003165 ENSG00000136854 STXBP1 MUNC18-1|NSEC1|P67|RBSEC1|UNC18 syntaxin binding protein 1 protein-coding 532-235 chr7 8467418 8467752 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 33976 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 846-25 chr2 149602978 149603447 + 3 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -15437 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 548-225 chr8 28264049 28264259 + 3 NA Intergenic LTR12F|LTR|ERV1 -53114 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 249-11 chr1 75058451 75058585 + 3 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -69916 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 497-76 chr14 66964227 66964509 + 3 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -225072 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 536-32 chr10 58497264 58497460 + 3 NA Intergenic Intergenic -15510 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 423-50 chr11 79123783 79124056 + 3 NA intron (NM_001098816, intron 4 of 33) MER103C|DNA|hAT-Charlie 278190 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 302-136 chr14 86555696 86555811 + 3 NA Intergenic L1MA6|LINE|L1 -350025 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 1338-6 chr5 46238660 46239398 + 3 NA Intergenic ALR/Alpha|Satellite|centr -542649 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 456-143 chr19 48081973 48082160 + 3 NA intron (NM_001159323, intron 10 of 16) AluSz|SINE|Alu 20695 NR_132365 106144526 Hs.622570 NR_132363 ENSG00000269420 PLA2G4C-AS1 - PLA2G4C antisense RNA 1 ncRNA 865 chr1 990799 991210 + 3 NA Intergenic L1MEc|LINE|L1 -8911 NM_001291367 84808 Hs.271462 NM_032722 ENSG00000187642 PERM1 C1orf170 PPARGC1 and ESRR induced regulator, muscle 1 protein-coding 377-87 chr12 34504613 34504836 + 3 NA Intergenic ALR/Alpha|Satellite|centr 482228 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 548-116 chr2 103940247 103940520 + 3 NA Intergenic L1MA4|LINE|L1 467949 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 553-134 chr2 171055667 171055967 + 3 NA intron (NM_001136555, intron 4 of 18) intron (NM_001136555, intron 4 of 18) 11156 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 496-14 chr1 101349492 101349711 + 3 NA intron (NR_126402, intron 3 of 4) AluJr|SINE|Alu 25764 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 946-8 chr18 67815503 67816003 + 3 NA promoter-TSS (NR_146471) promoter-TSS (NR_146471) -931 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 631-80 chr21 30938430 30938774 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -57022 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 680-109 chr7 39055078 39055637 + 3 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -41790 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 907-22 chr5 46123913 46124415 + 3 NA Intergenic ALR/Alpha|Satellite|centr -427784 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 529-114 chr2 149733594 149733928 + 3 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) 125430 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 383-272 chr4 32589747 32589959 + 3 NA Intergenic Intergenic 238815 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 465-260 chr6 151559543 151559783 + 3 NA intron (NM_025059, intron 5 of 10) L1MA4A|LINE|L1 65646 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 635-39 chr17 34896591 34896821 + 3 NA Intergenic Intergenic 64754 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 427-153 chr3 5691463 5691707 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 -441330 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 594-124 chr6 4442662 4442937 + 3 NA Intergenic L1MEd|LINE|L1 -45999 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 369-342 chr5 155454620 155454781 + 3 NA Intergenic Intergenic 440945 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 531-191 chr5 22834177 22834481 + 3 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 19015 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 458-162 chr22 30977358 30977584 + 3 NA non-coding (NR_152867, exon 4 of 4) non-coding (NR_152867, exon 4 of 4) 8260 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 561-148 chr4 71545573 71545879 + 3 NA intron (NM_003759, intron 15 of 22) intron (NM_003759, intron 15 of 22) 206673 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 403 chr1 18296178 18296396 + 3 NA intron (NM_032880, intron 3 of 9) MER39|LTR|ERV1 -184643 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 456-269 chr5 178801962 178802177 + 3 NA intron (NR_135095, intron 3 of 10) L2c|LINE|L2 16366 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 492-188 chr4 64762195 64762426 + 3 NA Intergenic L1MB5|LINE|L1 242190 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 305-422 chr5 12655312 12655504 + 3 NA intron (NR_033383, intron 2 of 3) L1MEf|LINE|L1 -12451 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 555-147 chr4 78105418 78105695 + 3 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 47986 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 557-200 chr8 105184239 105184536 + 3 NA Intergenic L1PA16|LINE|L1 -134051 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 754-42 chr2 71956980 71957416 + 3 NA Intergenic L1PA16|LINE|L1 190664 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 573-81 chr18 65452990 65453258 + 3 NA Intergenic L1MEd|LINE|L1 -297128 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 853-16 chr2 41195514 41195914 + 3 NA Intergenic Intergenic -681841 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 943-22 chr6 123442832 123443236 + 3 NA intron (NR_110844, intron 1 of 2) intron (NR_110844, intron 1 of 2) 3430 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 417-76 chr14 38063094 38063297 + 3 NA Intergenic LTR54|LTR|ERV1 -144709 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 455-126 chr2 84655822 84656006 + 3 NA intron (NM_001370, intron 35 of 76) L1MC2|LINE|L1 139459 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 600-42 chr16 8268345 8268585 + 3 NA Intergenic L1PB1|LINE|L1 321373 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 760-6 chr1 164024486 164024898 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -534668 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 228-58 chr11 91491400 91491513 + 3 NA Intergenic Intergenic -622254 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 347-80 chr11 97443157 97443395 + 3 NA Intergenic Intergenic 934851 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 398-211 chr3 103267976 103268115 + 3 NA Intergenic Intergenic 256071 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 454-93 chr14 71262747 71262912 + 3 NA Intergenic Intergenic -57647 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 1242-9 chr3 68171532 68172150 + 3 NA intron (NM_001252216, intron 2 of 4) L1MB7|LINE|L1 167594 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 1340-8 chr5 131843065 131843774 + 3 NA intron (NM_001303622, intron 11 of 12) MSTA-int|LTR|ERVL-MaLR -46402 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 457-69 chr14 55225378 55225598 + 3 NA Intergenic L1MC5|LINE|L1 -33903 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 451-26 chr10 32675098 32675359 + 3 NA intron (NM_001321115, intron 22 of 43) L1M4c|LINE|L1 226244 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 398-166 chr2 86578413 86578648 + 3 NA intron (NM_001198954, intron 3 of 7) L1MB7|LINE|L1 -15087 NR_036454 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 463-118 chr18 73935549 73935711 + 3 NA Intergenic Intergenic 212204 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 376-139 chr17 59910684 59910941 + 3 NA intron (NR_161462, intron 2 of 13) intron (NR_161462, intron 2 of 13) 17691 NR_161457 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 462-15 chr1 203093724 203094001 + 3 NA Intergenic L1MEc|LINE|L1 -7850 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 798-41 chr4 30193121 30193467 + 3 NA Intergenic Intergenic -527075 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1161-5 chr3 27244273 27244758 + 3 NA intron (NM_199347, intron 24 of 24) LTR41B|LTR|ERVL -27992 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 795-23 chr17 3445632 3446108 + 3 NA intron (NM_001321336, intron 7 of 8) MLT1D|LTR|ERVL-MaLR -12029 NM_003554 8388 Hs.533931 NM_003554 ENSG00000127780 OR1E2 OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529 olfactory receptor family 1 subfamily E member 2 protein-coding 1051-4 chr11 73516116 73516758 + 3 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 81675 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 591-89 chr20 53033095 53033493 + 3 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 60936 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 467-296 chr9 30827063 30827325 + 3 NA Intergenic L1M5|LINE|L1 -418740 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 547-13 chr10 4567983 4568255 + 3 NA Intergenic Intergenic -88037 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 411-237 chr5 124827811 124827959 + 3 NA Intergenic Intergenic -82773 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 484-265 chr8 90116816 90117093 + 3 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -34075 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 302-135 chr14 84527118 84527307 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -744720 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 845-38 chr7 137229055 137229500 + 3 NA intron (NM_001321386, intron 4 of 4) intron (NM_001321386, intron 4 of 4) 39578 NM_001321386 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 505-308 chr8 112854111 112854313 + 3 NA intron (NM_001363185, intron 9 of 66) LTR33A|LTR|ERVL 210719 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 292-292 chr3 110044088 110044235 + 3 NA Intergenic Intergenic 441333 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 505-148 chr2 79380554 79380856 + 3 NA Intergenic Intergenic 120139 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 615-100 chr4 162357650 162357891 + 3 NA Intergenic MER54B|LTR|ERVL -193736 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 518-285 chr7 114353859 114354173 + 3 NA intron (NR_033766, intron 2 of 19) MLT2B1|LTR|ERVL -60799 NR_033767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 699-32 chr14 87329860 87330169 + 3 NA Intergenic Intergenic 325280 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 541-193 chr5 144018732 144019060 + 3 NA Intergenic Intergenic 151763 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 535-260 chr9 110662675 110662921 + 3 NA Intergenic L1MA8|LINE|L1 -5993 NM_001166281 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 734-21 chr15 65058352 65058741 + 3 NA exon (NM_016563, exon 4 of 5) exon (NM_016563, exon 4 of 5) 9445 NM_016563 51285 Hs.27018 NM_016563 ENSG00000103710 RASL12 RIS RAS like family 12 protein-coding 116-23 chr20 59503577 59503616 + 3 NA Intergenic Intergenic -73913 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 403-19 chr1 208391495 208391667 + 3 NA Intergenic L1ME3Cz|LINE|L1 -147197 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 806-50 chr6 67301392 67301920 + 3 NA Intergenic Intergenic -753695 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 413-105 chr16 60621099 60621374 + 3 NA Intergenic Intergenic -261443 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 1006-13 chr17_GL000205v2_random 32433 33069 + 3 NA Intergenic CER|Satellite|Satellite 25215 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 903-5 chr11 50530760 50531324 + 3 NA Intergenic ALR/Alpha|Satellite|centr 121895 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 865-28 chr20 42344900 42345396 + 3 NA intron (NM_133170, intron 11 of 31) MER3|DNA|hAT-Charlie -340335 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 417 chr1 22942641 22942917 + 3 NA Intergenic Intergenic 30087 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 463-52 chr11 29714178 29714355 + 3 NA Intergenic Intergenic 95464 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 612-96 chr3 167233724 167233960 + 3 NA Intergenic Intergenic 146441 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 573-12 chr1 185918132 185918544 + 3 NA intron (NM_031935, intron 6 of 106) MLT2B3|LTR|ERVL 183947 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 480-39 chr11 19224642 19224865 + 3 NA exon (NM_001256371, exon 13 of 13) exon (NM_001256371, exon 13 of 13) 16192 NM_024680 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 627-114 chr7 122500567 122500886 + 3 NA intron (NM_001167940, intron 9 of 29) intron (NM_001167940, intron 9 of 29) -195976 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 165-114 chr6 129118564 129118669 + 3 NA intron (NM_000426, intron 4 of 64) L4_C_Mam|LINE|RTE-X 235475 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 363-415 chr7 52562313 52562470 + 3 NA Intergenic L2a|LINE|L2 -473242 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 990-22 chr5 162595327 162595809 + 3 NA Intergenic MIRb|SINE|MIR 527926 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 401-128 chr17 56437628 56437786 + 3 NA intron (NM_001370326, intron 8 of 20) intron (NM_001370326, intron 8 of 20) -155992 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 517-232 chr6 16719397 16719732 + 3 NA intron (NM_000332, intron 3 of 8) intron (NM_000332, intron 3 of 8) 40620 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 580-88 chr2 137429760 137430099 + 3 NA intron (NM_001316349, intron 14 of 27) intron (NM_001316349, intron 14 of 27) 498003 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 443-188 chr21 18212675 18212909 + 3 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -32041 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 263-20 chr1 159722165 159722315 + 3 NA Intergenic L1ME3Cz|LINE|L1 -7651 NM_000567 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 503-291 chr8 129096868 129097090 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -130978 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 433-22 chr10 33784090 33784359 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -11544 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 735-74 chr6 131069506 131069803 + 3 NA Intergenic L1M5|LINE|L1 -6332 NM_001350307 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 804-53 chr5 27286191 27286720 + 3 NA Intergenic Intergenic -185837 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 754-79 chr8 118969426 118969722 + 3 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 17311 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 572-96 chr2 179633688 179633889 + 3 NA intron (NR_148056, intron 3 of 9) L1PA6|LINE|L1 26406 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 742-56 chr4 33339045 33339339 + 3 NA Intergenic L1PB4|LINE|L1 700701 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 479-54 chr14 27226417 27226695 + 3 NA Intergenic L1MD|LINE|L1 317914 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 188-178 chr6 42853059 42853169 + 3 NA intron (NM_001318819, intron 8 of 13) intron (NM_001318819, intron 8 of 13) -26502 NM_001366481 285855 Hs.520133 NM_198486 ENSG00000146223 RPL7L1 dJ475N16.4 ribosomal protein L7 like 1 protein-coding 274-272 chr3 178458317 178458413 + 3 NA Intergenic Intergenic 39164 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 387-361 chr8 72181379 72181596 + 3 NA Intergenic Intergenic 70147 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 511-179 chr3 150380099 150380320 + 3 NA Intergenic Intergenic -28089 NM_014779 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 512-22 chr1 227343041 227343361 + 3 NA Intergenic Mam_R4|LINE|Dong-R4 -24709 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 567-169 chr7 54597273 54597663 + 3 NA Intergenic L1MB1|LINE|L1 40498 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 399-302 chr8 33636164 33636410 + 3 NA Intergenic L2c|LINE|L2 -36181 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 639-65 chr2 185092388 185092805 + 3 NA Intergenic L1PA16|LINE|L1 74476 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 495-111 chr2 77702206 77702451 + 3 NA Intergenic Intergenic -179895 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 395-165 chr2 53118971 53119142 + 3 NA Intergenic L1ME3A|LINE|L1 -416441 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 485-218 chr5 22225368 22225658 + 3 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -11663 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 863-8 chr11 111854554 111854935 + 3 NA intron (NR_147984, intron 6 of 15) L2c|LINE|L2 16537 NM_001352416 79796 Hs.745155 NM_024740 ENSG00000086848 ALG9 CDG1L|DIBD1|GIKANIS|LOH11CR1J ALG9 alpha-1,2-mannosyltransferase protein-coding 504-183 chr4 33633280 33633555 + 3 NA Intergenic MER44C|DNA|TcMar-Tigger 406476 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 563-8 chr1 208568862 208569104 + 3 NA Intergenic L2b|LINE|L2 -159705 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 512-42 chr10 94026001 94026261 + 3 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 32200 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 228-138 chr18 559027 559110 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21312 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 738-65 chr7 72034951 72035356 + 3 NA intron (NM_001363460, intron 3 of 5) L1MB3|LINE|L1 302238 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 480-125 chr18 53270984 53271282 + 3 NA intron (NM_005215, intron 12 of 28) intron (NM_005215, intron 12 of 28) 34032 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 431-195 chr4 58678505 58678723 + 3 NA Intergenic LTR49-int|LTR|ERV1 -142286 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 504-208 chr5 33116176 33116418 + 3 NA Intergenic L1MCa|LINE|L1 -113438 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 226-161 chr2 61207109 61207205 + 3 NA intron (NM_014709, intron 70 of 79) intron (NM_014709, intron 70 of 79) 29739 NR_152211 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 671-57 chr22 48454856 48455235 + 3 NA Intergenic Intergenic -34508 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 900-21 chr2 222984330 222984880 + 3 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -67325 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 700-26 chr13 105048642 105049083 + 3 NA Intergenic Intergenic -417005 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 215-337 chr9 71387038 71387162 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 59871 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 776-53 chr7 95333563 95334185 + 3 NA Intergenic L1ME3|LINE|L1 -9342 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 171-141 chr8 129397623 129397683 + 3 NA intron (NR_130918, intron 1 of 2) L1M2|LINE|L1 86489 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 462-131 chr2 24186459 24186763 + 3 NA intron (NM_001040710, intron 5 of 5) L1ME3B|LINE|L1 11558 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 301-476 chr9 11743619 11743745 + 3 NA Intergenic L1MA7|LINE|L1 -949703 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 530-236 chr7 64237715 64238086 + 3 NA intron (NM_153363, intron 1 of 4) MER21C|LTR|ERVL 9426 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 809-4 chr10 117593723 117594357 + 3 NA Intergenic MIR|SINE|MIR -48972 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 507-161 chr3 79617401 79617795 + 3 NA intron (NM_002941, intron 1 of 30) L1PB4|LINE|L1 109711 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 755-3 chr1 58940911 58941255 + 3 NA Intergenic MIRb|SINE|MIR -79393 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 469-27 chr10 49251657 49251864 + 3 NA Intergenic Intergenic 47133 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 713-27 chr15 69204735 69205120 + 3 NA intron (NM_001324094, intron 2 of 5) intron (NM_001324094, intron 2 of 5) 44292 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 642-9 chr10 32082569 32082801 + 3 NA Intergenic Intergenic -26260 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 1104 chr13 106390109 106390687 + 3 NA Intergenic Intergenic 13834 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 482-35 chr10 74285488 74285679 + 3 NA intron (NM_001369124, intron 3 of 9) AluJb|SINE|Alu 108820 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 324-30 chr1 178337071 178337205 + 3 NA intron (NM_170692, intron 3 of 17) intron (NM_170692, intron 3 of 17) -4313 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 430-203 chr3 178765794 178765979 + 3 NA intron (NR_126560, intron 2 of 7) intron (NR_126560, intron 2 of 7) 94519 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 937-16 chr2 33939847 33940494 + 3 NA intron (NR_126403, intron 3 of 5) MSTB1|LTR|ERVL-MaLR -127056 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 453-87 chr16 86451368 86451636 + 3 NA Intergenic (GATATA)n|Simple_repeat|Simple_repeat 57358 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 960-29 chr5 45962737 45963186 + 3 NA Intergenic ALR/Alpha|Satellite|centr -266581 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1036-17 chr22 34812835 34813348 + 3 NA intron (NR_138042, intron 3 of 4) MLT1K|LTR|ERVL-MaLR 184825 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 277-364 chr6 161554897 161555068 + 3 NA intron (NM_004562, intron 8 of 11) L1MC5a|LINE|L1 84005 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 655-119 chr8 28250502 28250999 + 3 NA Intergenic (TAATATAG)n|Simple_repeat|Simple_repeat -66518 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 273-258 chr20 33508842 33509030 + 3 NA intron (NM_001032999, intron 1 of 10) intron (NM_001032999, intron 1 of 10) 18840 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 840-30 chr2 209812553 209812939 + 3 NA intron (NM_032504, intron 7 of 63) intron (NM_032504, intron 7 of 63) 40753 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 311-249 chr2 50382953 50383091 + 3 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -35266 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 408-117 chr15 79915147 79915315 + 3 NA intron (NR_037653, intron 1 of 2) MER103C|DNA|hAT-Charlie -7540 NR_028330 283687 Hs.722219 NM_175898 ST20-AS1 C15orf37 ST20 antisense RNA 1 ncRNA 572-148 chr6 944406 944671 + 3 NA Intergenic Intergenic 76040 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 579-80 chr2 223571695 223571913 + 3 NA Intergenic L1M4|LINE|L1 30557 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 464-185 chr4 91361580 91361835 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 915595 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 536-29 chr10 29930816 29931064 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger 128646 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 511-256 chr8 77972517 77972922 + 3 NA Intergenic Intergenic 522022 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 323-87 chr11 76563465 76563625 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 106393 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 418-263 chr7 53311933 53312172 + 3 NA Intergenic Intergenic 276419 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 451-11 chr1 164347992 164348239 + 3 NA Intergenic L1PA14|LINE|L1 -211245 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 438-77 chr15 34180872 34181054 + 3 NA intron (NM_024713, intron 1 of 9) intron (NM_024713, intron 1 of 9) 29133 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 471-283 chr9 35978486 35978794 + 3 NA Intergenic L1MDa|LINE|L1 -20486 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 576-16 chr10 56219191 56219440 + 3 NA Intergenic Intergenic 141944 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 732-74 chr5 64775819 64776328 + 3 NA intron (NM_001297645, intron 2 of 10) (GA)n|Simple_repeat|Simple_repeat 7143 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 375-231 chr2 240667502 240667674 + 3 NA Intergenic L1MC3|LINE|L1 15297 NM_001102467 653437 Hs.437167 NM_001102467 ENSG00000185176 AQP12B INSSA3 aquaporin 12B protein-coding 740-55 chr3 63143773 63144112 + 3 NA Intergenic MER65A|LTR|ERV1 41254 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 464-149 chr20 58117544 58117885 + 3 NA Intergenic L1MC3|LINE|L1 -33188 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 435-244 chr8 99719595 99719784 + 3 NA intron (NM_017890, intron 37 of 61) intron (NM_017890, intron 37 of 61) 174018 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 625-66 chr22 48671884 48672189 + 3 NA intron (NM_001082967, intron 2 of 3) MIRb|SINE|MIR 95696 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 443-232 chr4 171073795 171073989 + 3 NA Intergenic Intergenic 33290 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 754-3 chr1 194588639 194589152 + 3 NA Intergenic L1M3|LINE|L1 1284150 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 481-273 chr7 17990104 17990264 + 3 NA Intergenic AluSx1|SINE|Alu 37662 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 439-190 chr3 119761260 119761545 + 3 NA intron (NM_033364, intron 17 of 17) L1MA8|LINE|L1 -19082 NM_003889 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 634-84 chr2 156252425 156252762 + 3 NA intron (NR_110250, intron 1 of 3) AluSx|SINE|Alu 2338 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 489-158 chr2 230355056 230355338 + 3 NA intron (NM_001352892, intron 2 of 18) L1ME2|LINE|L1 28026 NM_001352894 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 392-86 chr14 78779112 78779262 + 3 NA intron (NR_073547, intron 8 of 20) L1ME3Cz|LINE|L1 375468 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 868-41 chr7 100975922 100976492 + 3 NA intron (NM_001164462, intron 1 of 11) AluJr|SINE|Alu 6584 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 741-9 chr10 53653452 53653860 + 3 NA Intergenic Intergenic -832574 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 273-368 chr5 128658293 128658441 + 3 NA Intergenic L1M5|LINE|L1 -120122 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 432-167 chr22 34458889 34459196 + 3 NA Intergenic LTR78|LTR|ERV1 -536154 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 1083 chr1 180105830 180106382 + 3 NA intron (NM_014810, intron 37 of 37) intron (NM_014810, intron 37 of 37) -48727 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 533-20 chr10 85807518 85807814 + 3 NA intron (NM_017551, intron 8 of 15) L1MEh|LINE|L1 229935 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 442-317 chr9 101708745 101709039 + 3 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 29688 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 278-113 chr14 58721985 58722176 + 3 NA Intergenic L2b|LINE|L2 83243 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 321-580 chr8 131959656 131959871 + 3 NA intron (NR_136616, intron 8 of 23) intron (NR_136616, intron 8 of 23) 42990 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 488-99 chr16 64075141 64075355 + 3 NA Intergenic Intergenic 1046815 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 401-26 chr10 48315425 48315628 + 3 NA intron (NM_001323327, intron 2 of 12) intron (NM_001323327, intron 2 of 12) 8849 NR_136584 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 567-99 chr20 42849312 42849638 + 3 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -119268 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 538-38 chr11 42473373 42473703 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -219848 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 398-60 chr11 83658648 83658858 + 3 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) 23672 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 913-16 chr17 74615507 74615920 + 3 NA intron (NM_181449, intron 2 of 3) intron (NM_181449, intron 2 of 3) 8025 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 650-88 chr4 77506977 77507227 + 3 NA Intergenic Intergenic -4651 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 596-90 chr2 72479155 72479441 + 3 NA intron (NM_001321730, intron 16 of 21) intron (NM_001321730, intron 16 of 21) -331436 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 591-4 chr1 49445107 49445577 + 3 NA intron (NR_046839, intron 2 of 3) L1MA4A|LINE|L1 26743 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 474-119 chr18 71740773 71741087 + 3 NA intron (NR_126324, intron 1 of 4) L1PA15-16|LINE|L1 41296 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 524-218 chr6 24312506 24312845 + 3 NA intron (NM_016356, intron 2 of 9) intron (NM_016356, intron 2 of 9) -44228 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 431-225 chr5 58284039 58284244 + 3 NA Intergenic Intergenic -161800 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 505-157 chr2 106738142 106738321 + 3 NA Intergenic L1MB5|LINE|L1 147797 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 385-218 chr20 57201615 57201753 + 3 NA intron (NM_001719, intron 3 of 6) intron (NM_001719, intron 3 of 6) -12012 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 541-211 chr7 6703169 6703406 + 3 NA intron (NM_006956, intron 2 of 5) intron (NM_006956, intron 2 of 5) 3660 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 449-201 chr5 3015133 3015410 + 3 NA Intergenic L1ME2|LINE|L1 97417 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 525-209 chr5 147777833 147778094 + 3 NA intron (NM_001270934, intron 1 of 20) MamTip1|DNA|hAT-Tip100 4765 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 495-138 chr21 18328198 18328509 + 3 NA intron (NM_002772, intron 15 of 24) intron (NM_002772, intron 15 of 24) 75432 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 367-172 chr17 74323638 74323795 + 3 NA Intergenic Intergenic -2510 NM_153209 124602 Hs.372773 NM_153209 ENSG00000196169 KIF19 KIF19A kinesin family member 19 protein-coding 627-8 chr10 31554724 31555036 + 3 NA Intergenic L1MCa|LINE|L1 -155125 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 484-273 chr8 129974290 129974517 + 3 NA intron (NM_001353245, intron 1 of 13) intron (NM_001353245, intron 1 of 13) 34050 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 451-254 chr9 84581209 84581401 + 3 NA Intergenic L1ME3F|LINE|L1 -87153 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 302-80 chr11 79811448 79811595 + 3 NA Intergenic Intergenic -370491 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 936-31 chr7 80172314 80172730 + 3 NA intron (NM_001256414, intron 1 of 7) Tigger13a|DNA|TcMar-Tigger 36738 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 543-60 chr12 37733519 37733754 + 3 NA Intergenic ALR/Alpha|Satellite|centr -583138 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 528-73 chr12 129924845 129925155 + 3 NA Intergenic Intergenic -20975 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 660-101 chr7 79141388 79141787 + 3 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 132599 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 619-8 chr1 112229949 112230275 + 3 NA Intergenic Intergenic -166102 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 420 chr1 13970218 13970417 + 3 NA Intergenic MIR|SINE|MIR 220902 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 616-39 chr14 20121308 20121760 + 3 NA Intergenic L1M2a|LINE|L1 4066 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 390-366 chr7 133915731 133915868 + 3 NA intron (NM_021807, intron 12 of 17) intron (NM_021807, intron 12 of 17) -90911 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 394-211 chr3 30307339 30307555 + 3 NA Intergenic MER113|DNA|hAT-Charlie -211421 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 948-34 chr8 98802275 98802799 + 3 NA intron (NM_001256312, intron 3 of 12) L1MC5|LINE|L1 23134 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 742-50 chr3 25530924 25531377 + 3 NA intron (NR_110892, intron 3 of 6) LTR16C|LTR|ERVL 72840 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 215-274 chr6 38652042 38652163 + 3 NA Intergenic L1MD|LINE|L1 -12173 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 467-269 chr7 72046080 72046338 + 3 NA intron (NM_001363460, intron 3 of 5) AluJo|SINE|Alu 291182 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 512-234 chr6 49698488 49698761 + 3 NA intron (NM_001261822, intron 5 of 8) intron (NM_001261822, intron 5 of 8) 14919 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 558-225 chr8 135067620 135068032 + 3 NA Intergenic HAL1|LINE|L1 -166305 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1025-16 chr5 99786338 99786733 + 3 NA Intergenic L1MC2|LINE|L1 252545 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 271-462 chr8 129512308 129512486 + 3 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -28255 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 459-32 chr10 55721308 55721554 + 3 NA Intergenic L1MC|LINE|L1 -93489 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 591-64 chr19 37138873 37139268 + 3 NA Intergenic L1PA16|LINE|L1 33366 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 782-2 chr1 111839612 111839938 + 3 NA intron (NM_172198, intron 2 of 6) MIR|SINE|MIR 17130 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 534-119 chr2 96236837 96237096 + 3 NA intron (NR_046322, intron 1 of 3) ERVL-E-int|LTR|ERVL 22327 NR_145789 109623481 NR_145789 SNORA112 - small nucleolar RNA, H/ACA box 112 snoRNA 470-151 chr20 6758736 6758925 + 3 NA Intergenic Intergenic -8856 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 397-162 chr2 102920696 102920848 + 3 NA Intergenic MIR3|SINE|MIR -25050 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 607-5 chr1 71163967 71164205 + 3 NA intron (NR_046217, intron 2 of 3) MIR|SINE|MIR 82762 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 582-51 chr17 11265537 11265813 + 3 NA intron (NM_001173461, intron 2 of 3) intron (NM_001173461, intron 2 of 3) 24252 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 393-39 chr10 83007023 83007201 + 3 NA Intergenic MIRb|SINE|MIR 669977 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 778-21 chr14 38921048 38921562 + 3 NA Intergenic Intergenic -4423 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 554-19 chr1 213562049 213562234 + 3 NA Intergenic Intergenic -362608 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 343-469 chr6 67837941 67838087 + 3 NA Intergenic Intergenic -217337 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 452-7 chr1 99412852 99413049 + 3 NA Intergenic Intergenic 74854 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 658-3 chr1 43105165 43105625 + 3 NA Intergenic L1M4|LINE|L1 -42509 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 474-301 chr8 139072911 139073192 + 3 NA Intergenic MIRc|SINE|MIR -159010 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 440-68 chr14 47635543 47635869 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 39248 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 400-129 chr17 54964306 54964532 + 3 NA intron (NM_001162861, intron 2 of 3) intron (NM_001162861, intron 2 of 3) 4235 NR_027942 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 397-188 chr20 56239365 56239525 + 3 NA Intergenic L2|LINE|L2 -9287 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 724-45 chr20 46103705 46104034 + 3 NA Intergenic Intergenic -13907 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 298-70 chr11 38857798 38857981 + 3 NA Intergenic Intergenic 209031 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 591-173 chr9 27809950 27810274 + 3 NA Intergenic MamRep605|LTR?|LTR? -236246 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 503-315 chrX 155661501 155661812 + 3 NA intron (NM_001304990, intron 1 of 2) L1PB4|LINE|L1 -48704 NM_018196 55217 Hs.133321 NM_018196 ENSG00000185973 TMLHE AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130 trimethyllysine hydroxylase, epsilon protein-coding 512-69 chr12 119062868 119063143 + 3 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 81464 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 289-282 chr22 28274120 28274279 + 3 NA intron (NM_001145418, intron 5 of 22) L1ME3A|LINE|L1 -185670 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 792-43 chr4 98401752 98402210 + 3 NA intron (NM_021159, intron 6 of 14) intron (NM_021159, intron 6 of 14) 140597 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 915-2 chr11 20898724 20899106 + 3 NA intron (NM_201551, intron 5 of 18) L1ME3A|LINE|L1 229329 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 424-184 chr4 31314894 31315058 + 3 NA Intergenic Intergenic 143832 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 736-69 chr5 46023560 46023913 + 3 NA Intergenic ALR/Alpha|Satellite|centr -327356 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 424-82 chr15 79680527 79680688 + 3 NA Intergenic Intergenic 216390 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 404-159 chr2 50962955 50963224 + 3 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 69043 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 300-336 chr4 102508461 102508604 + 3 NA intron (NM_001319226, intron 1 of 23) intron (NM_001319226, intron 1 of 23) -6046 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 516-203 chr5 29602180 29602496 + 3 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -206362 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 479-95 chr19 42007841 42008048 + 3 NA intron (NM_002088, intron 14 of 18) L1MEc|LINE|L1 -13714 NM_152296 478 Hs.515427 NM_152296 ENSG00000105409 ATP1A3 AHC2|ATP1A1|CAPOS|DYT12|RDP ATPase Na+/K+ transporting subunit alpha 3 protein-coding 479-209 chr5 174967185 174967513 + 3 NA intron (NR_046113, intron 2 of 2) L1PA15|LINE|L1 28382 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 309-267 chr2 136520348 136520538 + 3 NA Intergenic L1MD2|LINE|L1 -245102 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 456-42 chr10 118056897 118057082 + 3 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -10048 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 346-516 chr9 14749355 14749526 + 3 NA intron (NR_163242, intron 5 of 11) intron (NR_163242, intron 5 of 11) -26707 NM_005454 9350 Hs.248204 NM_005454 ENSG00000147869 CER1 DAND4 cerberus 1, DAN family BMP antagonist protein-coding 850-14 chr16 20016882 20017470 + 3 NA Intergenic AluJr|SINE|Alu 56602 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 518-190 chr3 188921817 188922021 + 3 NA Intergenic Intergenic 25720 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 554-185 chr6 129779515 129779726 + 3 NA Intergenic L1MEd|LINE|L1 -69443 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 544-108 chr2 27998501 27998734 + 3 NA intron (NM_199193, intron 5 of 13) intron (NM_199193, intron 5 of 13) 2250 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 382-444 chrX 45459669 45459859 + 3 NA Intergenic L1PA17|LINE|L1 -45624 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 535-183 chr4 66816620 66816911 + 3 NA Intergenic Intergenic 539941 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 565-165 chr7 4300500 4300838 + 3 NA Intergenic MER63A|DNA|hAT-Blackjack -165832 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 645-110 chr7 16837553 16837801 + 3 NA Intergenic Intergenic -32678 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 1253-8 chr4 95345739 95346440 + 3 NA intron (NM_003728, intron 1 of 15) L1MA3|LINE|L1 202884 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 561-92 chr2 14937232 14937557 + 3 NA Intergenic MER70A|LTR|ERVL 304677 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 421-205 chr4 26487523 26487756 + 3 NA intron (NM_000730, intron 2 of 4) intron (NM_000730, intron 2 of 4) 2845 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 574-20 chr11 22011754 22012074 + 3 NA Intergenic Intergenic -181171 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 558-131 chr3 25129503 25129756 + 3 NA intron (NM_001290216, intron 3 of 10) L2a|LINE|L2 -211173 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 405-121 chr18 74699175 74699361 + 3 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 68305 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 668-15 chr11 92794993 92795378 + 3 NA intron (NM_001008781, intron 8 of 24) intron (NM_001008781, intron 8 of 24) 120443 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 838-24 chr3 180001381 180001709 + 3 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) -27320 NM_001256755 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 322-528 chr8 85144439 85144637 + 3 NA intron (NM_033402, intron 18 of 18) AluSp|SINE|Alu 32503 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 496-225 chr5 163310125 163310333 + 3 NA Intergenic L2a|LINE|L2 -127342 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 390-178 chr2 48188424 48188668 + 3 NA Intergenic MamRep1151|LTR?|LTR? -126136 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 779-3 chr1 49711741 49712243 + 3 NA intron (NM_001323575, intron 2 of 12) MIR|SINE|MIR -239907 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 437-187 chr4 29175130 29175281 + 3 NA Intergenic Intergenic -39087 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 351-458 chr7 103750391 103750602 + 3 NA intron (NM_005045, intron 5 of 64) THE1C|LTR|ERVL-MaLR 239020 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 430-170 chr2 231990554 231990854 + 3 NA intron (NR_046477, intron 1 of 18) intron (NR_046477, intron 1 of 18) 28991 NM_001257281 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 429-84 chr13 88803601 88803844 + 3 NA Intergenic Intergenic 176869 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 810-49 chr6 154670538 154671059 + 3 NA Intergenic L1MEg|LINE|L1 -62580 NM_001286199 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 821-57 chr9 31781097 31781428 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -399772 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 419-265 chr6 164744183 164744451 + 3 NA Intergenic L2a|LINE|L2 77746 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 450-34 chr10 83740416 83740673 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -63455 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 647-12 chr10 68200104 68200566 + 3 NA intron (NR_045663, intron 15 of 17) intron (NR_045663, intron 15 of 17) 31778 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 433-196 chr4 34426025 34426299 + 3 NA Intergenic Intergenic -156415 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 358-234 chr2 129626515 129626653 + 3 NA Intergenic L2a|LINE|L2 250907 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 526-258 chr9 28267824 28268103 + 3 NA intron (NM_152570, intron 5 of 6) MIR|SINE|MIR 451342 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 791-67 chr8 106944533 106945131 + 3 NA Intergenic Intergenic -174588 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 1098-6 chr5 117713240 117713775 + 3 NA Intergenic LTR76|LTR|ERV1 -16854 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 538-197 chr5 63993082 63993280 + 3 NA Intergenic L1MC4|LINE|L1 -30889 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 671-114 chrX 128636180 128636418 + 3 NA Intergenic Intergenic -583896 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 784-25 chr19 43906325 43906692 + 3 NA Intergenic L1M4|LINE|L1 -4705 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 291-230 chr2 117369328 117369456 + 3 NA Intergenic MER101-int|LTR|ERV1 -445299 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 331-376 chr4 43217254 43217421 + 3 NA Intergenic Intergenic 275206 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 377-327 chr5 100251890 100252088 + 3 NA Intergenic Intergenic 136265 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 260-148 chr15 60883408 60883547 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 201908 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 265-358 chr7 44901485 44901612 + 3 NA Intergenic MLT2D|LTR|ERVL -16018 NM_033224 5814 Hs.349150 NM_033224 ENSG00000146676 PURB PURBETA purine rich element binding protein B protein-coding 414-275 chr5 152738350 152738503 + 3 NA intron (NR_109877, intron 3 of 4) L1MA9|LINE|L1 233923 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 1112-4 chr11 39746647 39747118 + 3 NA Intergenic Intergenic 546248 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 505-228 chr4 135586820 135587104 + 3 NA Intergenic Intergenic 301131 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 723-75 chr8 53337133 53337447 + 3 NA Intergenic Intergenic -85593 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 444-171 chr4 64153460 64153750 + 3 NA Intergenic Intergenic 255845 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 570-13 chr1 216648386 216648662 + 3 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 74905 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 457-279 chrX 145313060 145313295 + 3 NA Intergenic L3|LINE|CR1 65674 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 638-71 chr2 114029684 114030048 + 3 NA Intergenic Intergenic -49882 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 326-468 chr6 137636868 137637044 + 3 NA Intergenic L1MB1|LINE|L1 -28690 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 260-42 chr10 36098000 36098090 + 3 NA Intergenic L1ME3Cz|LINE|L1 319743 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 426-199 chr4 32401998 32402241 + 3 NA Intergenic L1MEc|LINE|L1 51081 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 496-301 chr8 142707884 142708274 + 3 NA intron (NR_038925, intron 2 of 2) L1M5|LINE|L1 7968 NM_001160354 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 518-237 chr5 63265126 63265427 + 3 NA Intergenic L1P4|LINE|L1 686457 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 614-19 chr11 84617938 84618244 + 3 NA intron (NM_001351274, intron 5 of 26) L2c|LINE|L2 102851 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 298-270 chr21 30010035 30010213 + 3 NA Intergenic Intergenic -70072 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 476-134 chr2 41980684 41980866 + 3 NA Intergenic Intergenic -26969 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 613-49 chr18 75790739 75791050 + 3 NA Intergenic L1MB8|LINE|L1 -78491 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 566-191 chr8 51196762 51197057 + 3 NA Intergenic L1MC3|LINE|L1 612536 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 691-60 chr5 1747104 1747430 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -38399 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 1291 chr1 213563726 213564334 + 3 NA Intergenic L1MEd|LINE|L1 -360719 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 426-20 chr10 8699520 8699778 + 3 NA Intergenic Intergenic -105258 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 700-83 chr5 84453477 84453844 + 3 NA Intergenic L1MA7|LINE|L1 -68780 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 486-88 chr14 72875236 72875505 + 3 NA intron (NM_001280542, intron 1 of 10) AluJb|SINE|Alu 17279 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 526-247 chr8 85169013 85169325 + 3 NA Intergenic Intergenic 7872 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 339-387 chr3 177205747 177205955 + 3 NA Intergenic L2a|LINE|L2 -8369 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 400-158 chr2 47687813 47688001 + 3 NA Intergenic LTR41|LTR|ERVL -95175 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 797-18 chr17 33404737 33405151 + 3 NA intron (NM_001094, intron 1 of 9) L4_C_Mam|LINE|RTE-X -111956 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 503-206 chr3 192049219 192049433 + 3 NA Intergenic L1MA3|LINE|L1 -189304 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 914-20 chr20 16153825 16154346 + 3 NA Intergenic L1MC1|LINE|L1 -168203 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 440-193 chr5 28064099 28064256 + 3 NA Intergenic L1ME2|LINE|L1 223488 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 576-114 chr4 11449180 11449396 + 3 NA Intergenic Intergenic -20394 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 1053-9 chr17 62912876 62913486 + 3 NA Intergenic AluSx3|SINE|Alu -31034 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 390-198 chr2 147392784 147393038 + 3 NA Intergenic Intergenic -451606 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 690-5 chr10 20802154 20802453 + 3 NA intron (NM_001173484, intron 5 of 6) intron (NM_001173484, intron 5 of 6) 95299 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 618-104 chr6 9847174 9847540 + 3 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR -557145 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 473-10 chr1 106381941 106382132 + 3 NA Intergenic Intergenic -353783 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 300-222 chr2 213661075 213661249 + 3 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -96905 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 385-294 chr5 40115302 40115486 + 3 NA Intergenic Intergenic 63103 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 446-282 chr7 91482853 91483016 + 3 NA Intergenic Intergenic 218501 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 389-306 chr5 169646503 169646718 + 3 NA intron (NR_156756, intron 1 of 52) intron (NR_156756, intron 1 of 52) 9335 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 423-140 chr2 136070578 136070840 + 3 NA Intergenic L1MB2|LINE|L1 45526 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 822-34 chr2 130310253 130310794 + 3 NA Intergenic Intergenic 31585 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 610-74 chr18 52493625 52493908 + 3 NA intron (NM_005215, intron 1 of 28) L1MEg|LINE|L1 153569 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 999-14 chr8 82983168 82983763 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 71361 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 412-87 chr14 49239092 49239375 + 3 NA Intergenic L1PA16|LINE|L1 347147 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 626-139 chr8 88683655 88683897 + 3 NA Intergenic L1MA4|LINE|L1 -356293 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 643-62 chr2 217099094 217099376 + 3 NA Intergenic Intergenic -183498 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 773-21 chr20 54536781 54537236 + 3 NA intron (NM_018431, intron 1 of 7) L1MDa|LINE|L1 61415 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 607-151 chr8 138061187 138061509 + 3 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 22197 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 517-244 chr7 7153770 7153955 + 3 NA Intergenic Intergenic -28753 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 673-68 chr20 40326407 40326789 + 3 NA Intergenic Intergenic 322137 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 435-145 chr22 45347392 45347550 + 3 NA intron (NM_001291501, intron 21 of 22) intron (NM_001291501, intron 21 of 22) 29028 NM_001349913 55007 Hs.265018 NM_017911 ENSG00000100376 FAM118A C22orf8 family with sequence similarity 118 member A protein-coding 465-44 chr11 25545469 25545787 + 3 NA Intergenic Intergenic -643495 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 465-146 chr2 199872873 199873069 + 3 NA Intergenic AluSc|SINE|Alu -21798 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 346-243 chr2 79616640 79616817 + 3 NA intron (NM_001282598, intron 1 of 17) L1MEi|LINE|L1 32631 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 697-19 chr13 36764435 36764775 + 3 NA Intergenic Intergenic -54597 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 485-229 chr5 101174585 101174838 + 3 NA Intergenic Intergenic -271429 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 382-233 chr20 550227 550383 + 3 NA Intergenic Intergenic -6515 NM_177559 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 708-76 chr7 37057646 37057973 + 3 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 60013 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 373-411 chr8 82373586 82373802 + 3 NA Intergenic SATR1|Satellite|Satellite -531408 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 785-42 chr4 96447334 96447752 + 3 NA intron (NR_147149, intron 1 of 3) THE1B|LTR|ERVL-MaLR 136840 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 696-33 chr12 86045033 86045538 + 3 NA intron (NM_001351283, intron 2 of 5) MER102c|DNA|hAT-Charlie 170990 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 643-116 chr7 45165224 45165544 + 3 NA intron (NM_005856, intron 1 of 2) L1MEc|LINE|L1 7593 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 607-159 chrX 58370157 58370524 + 3 NA Intergenic ALR/Alpha|Satellite|centr -459707 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 192-175 chr6 64286817 64286886 + 3 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 480015 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 600-7 chr1 211119375 211119624 + 3 NA intron (NM_002238, intron 1 of 10) intron (NM_002238, intron 1 of 10) 13875 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 689-40 chr17 32167737 32168073 + 3 NA intron (NM_001288755, intron 1 of 18) AluJr4|SINE|Alu -16334 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 430-327 chr9 11402855 11403126 + 3 NA Intergenic L1MC1|LINE|L1 789784 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 426-30 chr10 66964485 66964650 + 3 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 38531 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 185-47 chr12 62299923 62300008 + 3 NA intron (NR_147080, intron 2 of 19) L1MB8|LINE|L1 39561 NR_147082 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 590-28 chr11 130177711 130177917 + 3 NA intron (NM_021978, intron 1 of 18) intron (NM_021978, intron 1 of 18) 18032 NM_021978 6768 Hs.504315 NM_021978 ENSG00000149418 ST14 ARCI11|HAI|MT-SP1|MTSP1|PRSS14|SNC19|TADG15|TMPRSS14 suppression of tumorigenicity 14 protein-coding 527-137 chr2 106674074 106674283 + 3 NA Intergenic L1PA10|LINE|L1 186814 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 638-58 chr18 1684500 1684927 + 3 NA Intergenic Intergenic -325084 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 520-205 chr4 31533340 31533550 + 3 NA intron (NR_149121, intron 1 of 2) intron (NR_149121, intron 1 of 2) 26901 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 492-196 chr4 112831963 112832190 + 3 NA intron (NM_001354275, intron 1 of 43) intron (NM_001354275, intron 1 of 43) 14079 NM_001354239 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 410-262 chr6 66481962 66482202 + 3 NA Intergenic Intergenic 694203 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 467-218 chr5 24961778 24961947 + 3 NA Intergenic L1MB7|LINE|L1 -121279 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 494-217 chr5 12844551 12844788 + 3 NA Intergenic Intergenic 176810 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 372-325 chr3 39035148 39035341 + 3 NA intron (NM_001349253, intron 1 of 29) L1MA3|LINE|L1 16700 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 444-58 chr12 133073009 133073184 + 3 NA Intergenic Intergenic -7107 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 514-34 chr10 84576624 84576815 + 3 NA Intergenic L1M4|LINE|L1 151550 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 365-368 chr7 22353400 22353563 + 3 NA intron (NM_012294, intron 1 of 25) L1MC5a|LINE|L1 3673 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 545-217 chr7 7443784 7444086 + 3 NA intron (NM_001037763, intron 19 of 34) intron (NM_001037763, intron 19 of 34) 91938 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 538-200 chr5 86663793 86664113 + 3 NA Intergenic LTR90B|LTR|LTR 43447 NR_145802 109623460 NR_037402 SNORD138 MIR3607|mir-3607 small nucleolar RNA, C/D box 138 snoRNA 434-124 chr18 72447320 72447488 + 3 NA Intergenic L2a|LINE|L2 96938 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 675-35 chr16 80102887 80103323 + 3 NA Intergenic Intergenic 307856 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 856-32 chr3 179992904 179993535 + 3 NA intron (NM_016559, intron 1 of 14) L1ME3G|LINE|L1 -18994 NM_001256755 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 890-3 chr10 30570160 30570553 + 3 NA Intergenic L1MC1|LINE|L1 59397 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 358-262 chr20 47039245 47039442 + 3 NA intron (NM_172110, intron 5 of 13) MER58B|DNA|hAT-Charlie -127624 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 418-75 chr14 84851310 84851580 + 3 NA Intergenic Intergenic -420487 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 1198-10 chr5 180260994 180261692 + 3 NA intron (NM_001364608, intron 6 of 12) L1MC4|LINE|L1 19265 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 455-40 chr10 114016037 114016340 + 3 NA Intergenic L1MB3|LINE|L1 -27678 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 396-326 chr7 26443554 26443716 + 3 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -44217 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 254-21 chr1 190466383 190466476 + 3 NA intron (NM_199051, intron 1 of 7) intron (NM_199051, intron 1 of 7) 9581 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 500-252 chr6 86540716 86540940 + 3 NA Intergenic L2a|LINE|L2 -396700 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 475-236 chr5 179904844 179905044 + 3 NA intron (NM_198868, intron 1 of 21) intron (NM_198868, intron 1 of 21) 2953 NM_015043 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 461-254 chr7 124914480 124914855 + 3 NA intron (NM_001042594, intron 3 of 17) MER2|DNA|TcMar-Tigger 15158 NM_015450 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 1163-12 chr5 45306331 45306930 + 3 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 389750 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 876-35 chr7 82763445 82763991 + 3 NA intron (NM_033026, intron 22 of 24) intron (NM_033026, intron 22 of 24) -319762 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 449-229 chr6 21261033 21261305 + 3 NA Intergenic MIRb|SINE|MIR 250723 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 160-40 chr2 102652954 102653027 + 3 NA intron (NM_003048, intron 1 of 11) intron (NM_003048, intron 1 of 11) 33437 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 660-36 chr19 9524028 9524415 + 3 NA 3' UTR (NM_024106, exon 8 of 8) 3' UTR (NM_024106, exon 8 of 8) 14424 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 728-5 chr1 112165731 112166207 + 3 NA Intergenic MIRb|SINE|MIR 175433 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 757-38 chr3 21594240 21594768 + 3 NA intron (NM_024697, intron 2 of 7) LTR16A2|LTR|ERVL 51715 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 689-82 chr5 94334253 94334615 + 3 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -222735 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 221-226 chr4 99498652 99498785 + 3 NA Intergenic Intergenic -12303 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 489-145 chr2 136592318 136592506 + 3 NA Intergenic Intergenic -173133 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 361-33 chr10 15933249 15933410 + 3 NA Intergenic Intergenic -72796 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 493-250 chr5 155450549 155450735 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 436887 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 489-79 chr14 67820992 67821210 + 3 NA intron (NM_133509, intron 1 of 10) intron (NM_133509, intron 1 of 10) 1322 NM_001321814 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 532-65 chr14 28155648 28155922 + 3 NA Intergenic L1MEj|LINE|L1 -482564 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 633-96 chr5 44057457 44057885 + 3 NA Intergenic Intergenic -331061 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 1230-3 chr18 4798186 4798906 + 3 NA Intergenic L2a|LINE|L2 -282636 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 514-133 chr19 29031101 29031406 + 3 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 28698 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 505-113 chr17 20061682 20061952 + 3 NA intron (NM_001243439, intron 1 of 14) L2a|LINE|L2 -25205 NM_001033553 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 537-232 chr7 36592630 36592904 + 3 NA intron (NM_001177507, intron 11 of 19) MIRb|SINE|MIR 7353 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 475-297 chr9 86755571 86755882 + 3 NA Intergenic Intergenic 191780 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 511-274 chr9 14575306 14575562 + 3 NA Intergenic Intergenic -43357 NM_001369458 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 635-82 chr4 70575012 70575312 + 3 NA Intergenic Intergenic -17094 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 508-166 chr4 55053530 55053821 + 3 NA Intergenic Intergenic 71920 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 384-206 chr21 23578414 23578622 + 3 NA Intergenic Intergenic -193683 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 245-106 chr12 117544642 117544836 + 3 NA intron (NM_173598, intron 9 of 19) L1MD2|LINE|L1 -182937 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 480-103 chr16 55697289 55697599 + 3 NA intron (NM_001172504, intron 8 of 13) intron (NM_001172504, intron 8 of 13) 25773 NM_001172502 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 559-90 chr2 57205107 57205340 + 3 NA Intergenic Intergenic -702428 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 623-21 chr11 45606816 45607240 + 3 NA Intergenic Intergenic 58594 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 478-7 chr1 74935383 74935557 + 3 NA Intergenic Intergenic -192964 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 524-187 chr4 186688183 186688489 + 3 NA intron (NM_005245, intron 2 of 26) intron (NM_005245, intron 2 of 26) 35520 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 643-97 chr5 108819623 108820001 + 3 NA intron (NM_001308028, intron 3 of 17) intron (NM_001308028, intron 3 of 17) 70864 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 411-319 chrX 45752579 45752738 + 3 NA Intergenic Intergenic -5534 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 791-26 chr15 68540055 68540630 + 3 NA intron (NM_001324014, intron 2 of 12) Charlie1a|DNA|hAT-Charlie 21969 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 628-4 chr1 42762259 42762627 + 3 NA exon (NM_001146289, exon 2 of 15) exon (NM_001146289, exon 2 of 15) 4641 NM_001146289 64175 Hs.720014 NM_022356 ENSG00000117385 P3H1 GROS1|LEPRE1|OI8 prolyl 3-hydroxylase 1 protein-coding 474-236 chr5 97353602 97353862 + 3 NA Intergenic L1PA13|LINE|L1 -150964 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 206-219 chr5 141865318 141865429 + 3 NA exon (NM_032420, exon 3 of 5) exon (NM_032420, exon 3 of 5) 829 NM_001278615 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 1164-3 chr18 9999275 9999874 + 3 NA Intergenic L1M2|LINE|L1 85558 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 255-61 chr11 81848570 81848660 + 3 NA Intergenic L1MEd|LINE|L1 42221 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 633-21 chr11 55387546 55387844 + 3 NA Intergenic Intergenic 19811 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 498-247 chr7 38156501 38156749 + 3 NA Intergenic L1MB2|LINE|L1 -21620 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 564-190 chr7 71117505 71117864 + 3 NA Intergenic AluSx1|SINE|Alu -14460 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 498-252 chr7 64977007 64977291 + 3 NA 3' UTR (NM_015852, exon 4 of 4) 3' UTR (NM_015852, exon 4 of 4) 13887 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 538-93 chr18 25772880 25773197 + 3 NA Intergenic L1MEg|LINE|L1 317575 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 540-26 chr10 24079870 24080185 + 3 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -128764 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 455-110 chr19 27558042 27558291 + 3 NA Intergenic ALR/Alpha|Satellite|centr -235265 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1100-2 chr1 246967357 246967860 + 3 NA intron (NR_037892, intron 5 of 5) L2a|LINE|L2 -35660 NM_001323343 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 419-154 chr2 157650779 157650949 + 3 NA Intergenic L1ME4b|LINE|L1 -22000 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 683-53 chr3 53949316 53949633 + 3 NA Intergenic L1MB7|LINE|L1 -57615 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 510-217 chr5 7912132 7912349 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 43092 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 765-49 chr4 108960906 108961393 + 3 NA intron (NM_001256074, intron 6 of 31) intron (NM_001256074, intron 6 of 31) -198096 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 537-67 chr14 52623492 52623824 + 3 NA intron (NR_148417, intron 4 of 7) Charlie1|DNA|hAT-Charlie 70822 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 830-52 chr8 84096544 84097120 + 3 NA Intergenic Intergenic -85955 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 557-115 chr2 185506278 185506705 + 3 NA Intergenic Intergenic 232228 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 513-27 chr10 55868036 55868323 + 3 NA Intergenic Intergenic -240237 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 495-186 chr4 159926587 159926897 + 3 NA Intergenic MER76|LTR|ERVL -148958 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 315-194 chr17 66170830 66170980 + 3 NA intron (NM_001353129, intron 4 of 26) intron (NM_001353129, intron 4 of 26) 20987 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 367-308 chr4 76335 76535 + 3 NA intron (NM_182524, intron 3 of 3) L1M3a|LINE|L1 23114 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 591-92 chr21 41984838 41985143 + 3 NA Intergenic Intergenic -24204 NR_119384 150142 Hs.143833 NM_198078 ENSG00000237232 ZNF295-AS1 C21orf121|NCRNA00318|PRED87 ZNF295 antisense RNA 1 ncRNA 476-55 chr11 110559737 110560024 + 3 NA Intergenic L1MD2|LINE|L1 129932 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 930-13 chr16 58270832 58271280 + 3 NA intron (NM_014157, intron 7 of 8) L1MC3|LINE|L1 21120 NM_014157 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 503-104 chr15 26100001 26100241 + 3 NA Intergenic L1MC3|LINE|L1 -15692 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 508-21 chr1 248796787 248797033 + 3 NA Intergenic AluJb|SINE|Alu 28456 NM_001322463 80851 Hs.298573 NM_030645 ENSG00000175137 SH3BP5L - SH3 binding domain protein 5 like protein-coding 383-5 chr1 57529291 57529464 + 3 NA intron (NM_001353980, intron 4 of 5) L1MEg|LINE|L1 -104456 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 385-153 chr19 15959712 15959963 + 3 NA Intergenic AluJb|SINE|Alu 10829 NM_001004465 126541 Hs.553579 NM_001004465 ENSG00000176231 OR10H4 OR19-28 olfactory receptor family 10 subfamily H member 4 protein-coding 516-213 chr5 140795897 140796225 + 3 NA exon (NM_018905, exon 1 of 4) exon (NM_018905, exon 1 of 4) 1209 NM_018905 56146 Hs.199343 NM_018905 ENSG00000204969 PCDHA2 PCDH-ALPHA2 protocadherin alpha 2 protein-coding 567-137 chr4 150392072 150392395 + 3 NA intron (NM_001367550, intron 47 of 56) MLT1A|LTR|ERVL-MaLR -186856 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 737-22 chr13 96647773 96648076 + 3 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 220695 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 541-30 chr11 23134865 23135150 + 3 NA Intergenic L1PA13|LINE|L1 -274533 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 451-191 chr6 2279897 2280106 + 3 NA intron (NR_046229, intron 3 of 6) L1MA9|LINE|L1 34248 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 1315-6 chr7 55941362 55942094 + 3 NA 3' UTR (NM_001366796, exon 7 of 7) 3' UTR (NM_001366796, exon 7 of 7) -10149 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 612-54 chr19 27590289 27590558 + 3 NA Intergenic ALR/Alpha|Satellite|centr -203008 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 565-146 chr5 105764827 105765186 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 665532 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 576-81 chr2 46103142 46103426 + 3 NA intron (NM_005400, intron 11 of 14) L1MC3|LINE|L1 -194123 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 602-103 chr5 32835152 32835425 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -112155 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 590-180 chr9 95420438 95420850 + 3 NA Intergenic Intergenic -42965 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 382-317 chr5 15555949 15556134 + 3 NA intron (NM_001278317, intron 1 of 3) (ATCT)n|Simple_repeat|Simple_repeat 54603 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 675-67 chr4 100535972 100536324 + 3 NA Intergenic L1MA1|LINE|L1 -18126 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 252-401 chr7 64935305 64935471 + 3 NA Intergenic L1M2|LINE|L1 32146 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 430-227 chr4 181911800 181911994 + 3 NA Intergenic Intergenic -81924 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 485-27 chr10 36004675 36004866 + 3 NA Intergenic L1ME4a|LINE|L1 226468 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 454-161 chr2 106768471 106768727 + 3 NA Intergenic Intergenic 117429 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 608-16 chr10 82567603 82567967 + 3 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -334865 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 838-22 chr21 31468661 31469033 + 3 NA intron (NM_003253, intron 1 of 28) LTR33|LTR|ERVL 90240 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 488-224 chr5 120397784 120397947 + 3 NA Intergenic Intergenic -66413 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 438-14 chr1 118702892 118703045 + 3 NA Intergenic L1MA4|LINE|L1 285375 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 440-230 chr7 8036285 8036469 + 3 NA intron (NM_138426, intron 3 of 7) L1PB4|LINE|L1 67581 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 526-196 chr5 45547989 45548278 + 3 NA intron (NM_021072, intron 2 of 7) L3|LINE|CR1 148247 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 844-51 chr5 25643034 25643342 + 3 NA Intergenic Intergenic 452235 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 378-334 chr5 22551971 22552170 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 301274 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 912-46 chr8 126691252 126691699 + 3 NA Intergenic Intergenic -132997 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 260-141 chr15 26455514 26455665 + 3 NA Intergenic MER41B|LTR|ERV1 173501 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 1236-8 chr8 121760893 121761446 + 3 NA Intergenic Intergenic -119729 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 462-219 chr4 184524519 184524682 + 3 NA intron (NR_147158, intron 1 of 2) L1PA11|LINE|L1 12983 NR_147158 105377585 Hs.519127 NR_147158 ENSG00000271538 LINC02427 - long intergenic non-protein coding RNA 2427 ncRNA 967-25 chr7 40659520 40660148 + 3 NA intron (NM_001193312, intron 11 of 12) (TACAC)n|Simple_repeat|Simple_repeat 320105 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 1196-10 chr5 179072173 179072896 + 3 NA intron (NM_014594, intron 2 of 4) L1MEb|LINE|L1 12161 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 1254-3 chr2 13041055 13041766 + 3 NA Intergenic L1PA8A|LINE|L1 -34397 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 578-156 chr7 37036691 37037083 + 3 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 39091 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 411-180 chr3 60677581 60677802 + 3 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) -59821 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 406-204 chr4 41330881 41331050 + 3 NA Intergenic Intergenic -28642 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 427-110 chr2 35688242 35688428 + 3 NA Intergenic L1MD3|LINE|L1 216930 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 520-245 chr5 121128341 121128553 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -194103 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 789-15 chr12 86881518 86881957 + 3 NA Intergenic Zaphod3|DNA|hAT-Tip100 -42737 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 466-33 chr10 83000840 83001077 + 3 NA Intergenic Intergenic 676131 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 418-185 chr4 80796764 80796908 + 3 NA intron (NM_001206997, intron 4 of 6) ERVL-E-int|LTR|ERVL -233872 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 399-51 chr11 37270863 37271021 + 3 NA Intergenic L1PB4|LINE|L1 -667659 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 521-82 chr14 66192273 66192594 + 3 NA Intergenic Intergenic -293938 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 874-11 chr2 53572490 53573105 + 3 NA Intergenic Intergenic -194986 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 477-14 chr1 102497077 102497376 + 3 NA Intergenic Intergenic -499992 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 279-233 chr21 20266687 20266818 + 3 NA Intergenic Intergenic -8067 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 205-241 chr6 64593521 64593644 + 3 NA intron (NM_001292009, intron 24 of 43) intron (NM_001292009, intron 24 of 43) -707836 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 502-126 chr19 56868192 56868452 + 3 NA Intergenic Intergenic 27420 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 584-94 chr3 10767089 10767435 + 3 NA Intergenic Intergenic -3053 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 420-171 chr22 26337230 26337455 + 3 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -91918 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 981-29 chr7 64994944 64995487 + 3 NA intron (NM_001007253, intron 1 of 1) HERV3-int|LTR|ERV1 -4179 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 379-365 chr8 135037304 135037460 + 3 NA Intergenic L1PA16|LINE|L1 187447 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 466-183 chr4 28997446 28997720 + 3 NA intron (NR_146499, intron 1 of 2) THE1B|LTR|ERVL-MaLR 799 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 280-366 chr7 1309459 1309620 + 3 NA Intergenic (ATGATG)n|Simple_repeat|Simple_repeat 76667 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 566-73 chr18 57108206 57108555 + 3 NA Intergenic Intergenic -36261 NR_048536 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 446-254 chr5 162707986 162708189 + 3 NA Intergenic Intergenic 640445 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 525-103 chr2 4402556 4402896 + 3 NA Intergenic MIR|SINE|MIR 253496 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 549-198 chr7 91413841 91414229 + 3 NA Intergenic Intergenic 149602 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 403-128 chr17 39884521 39884692 + 3 NA Intergenic Intergenic 16404 NM_199321 124626 Hs.367245 NM_198844 ENSG00000186075 ZPBP2 ZPBPL zona pellucida binding protein 2 protein-coding 380-288 chr4 137228367 137228511 + 3 NA Intergenic Intergenic -15640 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 525-20 chr1 248315413 248315747 + 3 NA Intergenic L1PA10|LINE|L1 8988 NM_001004691 391196 Hs.530570 NM_001004691 ENSG00000177186 OR2M7 OR1-58 olfactory receptor family 2 subfamily M member 7 protein-coding 971-2 chr10 18147249 18147700 + 3 NA intron (NM_001167945, intron 1 of 13) intron (NM_001167945, intron 1 of 13) 7050 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 293-123 chr14 81643752 81643919 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -20774 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 310-516 chr8 76015787 76015962 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -390780 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 381-62 chr10 104569241 104569457 + 3 NA Intergenic L1MA8|LINE|L1 -71941 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 1095-9 chr5 171605510 171606195 + 3 NA Intergenic L1MC4a|LINE|L1 -180020 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 599-114 chr6 50173735 50173946 + 3 NA Intergenic L1ME2|LINE|L1 -123911 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 847-43 chr6 134702925 134703410 + 3 NA Intergenic Intergenic -163162 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 463-128 chr19 46101821 46102105 + 3 NA Intergenic LTR76|LTR|ERV1 22725 NM_207393 388555 Hs.365496 NM_207393 ENSG00000188624 IGFL3 UNQ483 IGF like family member 3 protein-coding 569-77 chr18 62338317 62338511 + 3 NA intron (NM_001270949, intron 1 of 8) L1MB4|LINE|L1 13104 NM_001278268 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 482-288 chr8 140692188 140692391 + 3 NA intron (NR_148037, intron 28 of 34) intron (NR_148037, intron 28 of 34) 26280 NM_001352752 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 475-15 chr1 213521678 213521894 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -402963 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 322-255 chr2 102642899 102643103 + 3 NA intron (NM_003048, intron 1 of 11) L1MDa|LINE|L1 23448 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 759-48 chr3 27251866 27252183 + 3 NA intron (NM_199347, intron 24 of 24) intron (NM_199347, intron 24 of 24) -35501 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 530-156 chr21 30699691 30699908 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 18978 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 526-129 chr2 102919257 102919570 + 3 NA Intergenic Intergenic -23691 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 603-153 chr7 40340177 40340554 + 3 NA intron (NM_024728, intron 9 of 14) CR1_Mam|LINE|CR1 205389 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 502-197 chr4 41322267 41322526 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -37211 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 487-214 chr4 74616926 74617247 + 3 NA Intergenic L1MEf|LINE|L1 171950 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 512-285 chr8 134130635 134130832 + 3 NA Intergenic L1MEd|LINE|L1 244237 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 270-362 chr7 67844693 67844865 + 3 NA Intergenic L1ME4a|LINE|L1 -175474 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 484-89 chr16 78061202 78061475 + 3 NA Intergenic Intergenic -38316 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 375-350 chr6 52075240 52075425 + 3 NA intron (NM_138694, intron 6 of 66) intron (NM_138694, intron 6 of 66) 12281 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 692-97 chr8 59987586 59988006 + 3 NA Intergenic L1MA8|LINE|L1 293604 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 535-248 chr8 132808878 132809148 + 3 NA intron (NM_198513, intron 7 of 7) intron (NM_198513, intron 7 of 7) 33625 NM_016018 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 681-62 chr4 184045314 184045822 + 3 NA Intergenic L1MC4|LINE|L1 140261 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 453-188 chr4 126057044 126057250 + 3 NA Intergenic Intergenic 549888 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 530-187 chr5 9851939 9852169 + 3 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -2323 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 409-108 chr17 34830406 34830588 + 3 NA Intergenic FLAM_A|SINE|Alu 130963 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 506-167 chr20 55578809 55579050 + 3 NA Intergenic Intergenic -151732 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 754-73 chr6 144869153 144869675 + 3 NA Intergenic Intergenic 463759 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 482-186 chr4 71446576 71446776 + 3 NA intron (NM_003759, intron 5 of 22) MIRc|SINE|MIR 107623 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 651-46 chr16 48311209 48311463 + 3 NA intron (NM_031490, intron 11 of 14) L1M2|LINE|L1 54551 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 618-15 chr10 115190008 115190324 + 3 NA intron (NM_207303, intron 8 of 28) Tigger3b|DNA|TcMar-Tigger 96801 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 700-88 chr6 51107034 51107473 + 3 NA Intergenic Intergenic 288382 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 705-87 chr6 54828982 54829304 + 3 NA Intergenic Intergenic -17628 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 524-47 chr12 64368653 64369027 + 3 NA intron (NM_001099676, intron 1 of 10) MIR3|SINE|MIR 21918 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 546-106 chr2 78319597 78320040 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -29087 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 916-35 chr8 124820732 124821420 + 3 NA promoter-TSS (NR_039806) promoter-TSS (NR_039806) -909 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 550-136 chr20 58145434 58145700 + 3 NA Intergenic Intergenic -5335 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 338-138 chr12 117249477 117249635 + 3 NA intron (NM_001204213, intron 16 of 27) MamRep434|DNA|TcMar-Tigger 55496 NM_001204213 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 355-412 chr5 121541305 121541515 + 3 NA Intergenic MER67D|LTR|ERV1 218860 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 590-72 chr19 56423482 56423832 + 3 NA exon (NM_001159861, exon 5 of 5) exon (NM_001159861, exon 5 of 5) 19325 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 586-96 chr3 5962512 5962870 + 3 NA Intergenic Intergenic -712436 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 362-276 chr3 104046645 104046824 + 3 NA Intergenic Intergenic -522618 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 371-306 chr5 38138136 38138301 + 3 NA intron (NR_147009, intron 2 of 2) L1MB8|LINE|L1 -10262 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 361-375 chr5 146438099 146438348 + 3 NA Intergenic AluJo|SINE|Alu -9110 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 760-66 chr6 45242067 45242606 + 3 NA intron (NM_001350325, intron 2 of 10) L1M4a2|LINE|L1 -44566 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 792-22 chr14 57851469 57851981 + 3 NA intron (NM_001352012, intron 1 of 8) L1MD3|LINE|L1 13274 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 492-11 chr1 119249163 119249330 + 3 NA intron (NR_125975, intron 4 of 6) intron (NR_125975, intron 4 of 6) -79006 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 612-104 chr4 74492175 74492560 + 3 NA Intergenic Intergenic 47231 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 957-7 chr12 59431744 59432541 + 3 NA Intergenic Intergenic -163887 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 592-133 chr5 2850886 2851237 + 3 NA Intergenic Intergenic -66793 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 581-177 chr8 127538600 127538870 + 3 NA Intergenic Intergenic -56596 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 404-160 chr2 52827862 52828095 + 3 NA Intergenic Intergenic -125363 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 475-284 chr8 98608108 98608426 + 3 NA intron (NM_001256313, intron 4 of 8) Charlie1a|DNA|hAT-Charlie 181309 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 584-80 chr2 117414137 117414381 + 3 NA Intergenic Intergenic -400432 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 445-249 chr7 39425481 39425667 + 3 NA intron (NM_001370959, intron 6 of 9) intron (NM_001370959, intron 6 of 9) -19228 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 621-94 chr5 36122912 36123276 + 3 NA intron (NM_001007527, intron 7 of 17) intron (NM_001007527, intron 7 of 17) 24894 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 312-348 chr3 153291824 153291977 + 3 NA Intergenic L2a|LINE|L2 129674 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 343-438 chr5 92536280 92536418 + 3 NA Intergenic L1MEf|LINE|L1 1034994 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 1085-8 chr19 9341848 9342424 + 3 NA exon (NM_032497, exon 7 of 7) exon (NM_032497, exon 7 of 7) 17441 NM_001202425 100529215 Hs.728944 NM_001172650 ENSG00000270011 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 648-130 chr7 1588535 1588892 + 3 NA non-coding (NR_021487, exon 6 of 6) non-coding (NR_021487, exon 6 of 6) 18640 NR_027329 114796 Hs.436146 NR_021487 ENSG00000230487 PSMG3-AS1 - PSMG3 antisense RNA 1 (head to head) ncRNA 370-215 chr2 13499275 13499462 + 3 NA Intergenic L1MD|LINE|L1 -492355 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 308-31 chr1 163920789 163920958 + 3 NA Intergenic L1ME3A|LINE|L1 -497682 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 616-174 chr8 132280999 132281508 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 166009 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 874-12 chr2 75038866 75039315 + 3 NA Intergenic Intergenic -51722 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 376-56 chr10 85198215 85198489 + 3 NA intron (NR_120667, intron 1 of 3) intron (NR_120667, intron 1 of 3) 553 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 326-378 chr4 98275671 98275882 + 3 NA intron (NM_001100427, intron 1 of 14) L2|LINE|L2 14392 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 552-186 chr6 34019780 34020102 + 3 NA 3' UTR (NM_001256812, exon 10 of 10) 3' UTR (NM_001256812, exon 10 of 10) -19890 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 554-73 chr14 62602262 62602523 + 3 NA Intergenic L1MA8|LINE|L1 443066 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 433-273 chr8 53858965 53859133 + 3 NA intron (NM_001286674, intron 1 of 2) L1MC5a|LINE|L1 7254 NM_001286675 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 686-61 chr5 29878569 29878971 + 3 NA Intergenic Intergenic -1790 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 908 chr10 30279710 30280098 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 68052 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 640-23 chr11 43701886 43702297 + 3 NA intron (NM_016142, intron 1 of 10) L1MA1|LINE|L1 21353 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 486-22 chr10 9040171 9040464 + 3 NA Intergenic L2a|LINE|L2 142328 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 316-327 chr20 58034792 58034969 + 3 NA Intergenic L1M8|LINE|L1 30976 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 827-31 chr22 34768789 34769317 + 3 NA intron (NR_138042, intron 3 of 4) MIR|SINE|MIR 228863 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 554-44 chr11 36203174 36203573 + 3 NA intron (NM_001304264, intron 4 of 5) MIRb|SINE|MIR 86051 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 557-82 chr19 40023639 40023955 + 3 NA Intergenic Intergenic 26737 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 535-85 chr15 51300489 51300676 + 3 NA intron (NM_000103, intron 1 of 9) intron (NM_000103, intron 1 of 9) -12244 NM_001347250 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 378-247 chr2 179920853 179921032 + 3 NA Intergenic L1MEd|LINE|L1 -59330 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 1134-15 chr7 19392912 19393531 + 3 NA Intergenic Intergenic -247800 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 540-225 chr9 40925886 40926198 + 3 NA Intergenic CER|Satellite|Satellite 3050 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 695-83 chr5 117227603 117228036 + 3 NA Intergenic Intergenic -187693 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 402-226 chr4 448699 448896 + 3 NA intron (NM_133474, intron 2 of 2) L1MB2|LINE|L1 25412 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 162-62 chr2 175831326 175831388 + 3 NA Intergenic L1MEc|LINE|L1 170910 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 510-171 chr20 60007979 60008370 + 3 NA intron (NM_021810, intron 5 of 5) intron (NM_021810, intron 5 of 5) 11800 NM_001348204 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 468-47 chr11 43966767 43967075 + 3 NA Intergenic L1M7|LINE|L1 24284 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 319-177 chr16 74008089 74008299 + 3 NA Intergenic Intergenic 207327 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 364-208 chr2 72635636 72635797 + 3 NA intron (NR_135774, intron 6 of 19) L1MDa|LINE|L1 190317 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 676-98 chr5 178925701 178926146 + 3 NA intron (NM_030613, intron 4 of 4) AluJb|SINE|Alu -15275 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 486-230 chr4 122469392 122469626 + 3 NA Intergenic L1MB7|LINE|L1 -13014 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 528-267 chrX 82512945 82513227 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -995204 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 313-361 chr3 143809399 143809606 + 3 NA intron (NM_173653, intron 2 of 15) intron (NM_173653, intron 2 of 15) 38966 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 724-92 chr7 52676717 52677030 + 3 NA Intergenic Intergenic -358760 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 568-171 chr6 63218573 63218919 + 3 NA Intergenic Intergenic 101231 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 789 chr1 86799646 86799933 + 3 NA Intergenic Intergenic 95213 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 527-117 chr19 24375733 24376035 + 3 NA Intergenic ALR/Alpha|Satellite|centr -212437 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 841-30 chr5 3943944 3944365 + 3 NA Intergenic Intergenic 348322 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 328-561 chr8 57900348 57900534 + 3 NA Intergenic Intergenic -77917 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 553-61 chr14 42520739 42521033 + 3 NA Intergenic L1M3b|LINE|L1 914030 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 479-113 chr2 165460230 165460416 + 3 NA Intergenic L1MC5a|LINE|L1 -9375 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 496-240 chr6 105740241 105740486 + 3 NA Intergenic Intergenic -337281 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 460-116 chr18 23097163 23097326 + 3 NA Intergenic AluSx1|SINE|Alu -37320 NR_023359 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 650-49 chr2 18674174 18674502 + 3 NA Intergenic L1PB3|LINE|L1 -84758 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 480-106 chr16 75949610 75949875 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -223252 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 437-245 chr6 154579316 154579557 + 3 NA Intergenic Intergenic -68751 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 605-136 chrX 34077490 34077857 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 54657 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 391-230 chr3 54495254 54495492 + 3 NA intron (NM_018398, intron 4 of 37) L1ME2|LINE|L1 144484 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 554-9 chr1 78058023 78058428 + 3 NA intron (NM_017655, intron 1 of 5) MIR|SINE|MIR 12259 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 579-19 chr10 101161984 101162207 + 3 NA Intergenic Intergenic -14227 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 954-3 chr10 44443099 44443726 + 3 NA Intergenic L1MC3|LINE|L1 -58315 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 1354-3 chr11 60562183 60562909 + 3 NA Intergenic L1P3|LINE|L1 47154 NM_001278320 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 588-19 chr11 29971824 29972115 + 3 NA Intergenic L2a|LINE|L2 10424 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 501-276 chr9 29817082 29817276 + 3 NA Intergenic L1M2c|LINE|L1 591275 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 793-50 chr8 88991868 88992288 + 3 NA Intergenic MER68B|LTR|ERVL -664595 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 744-34 chr2 114830962 114831347 + 3 NA intron (NR_132105, intron 1 of 1) intron (NR_132105, intron 1 of 1) 2394 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 581-32 chr12 65577635 65577986 + 3 NA intron (NR_120434, intron 3 of 4) L1ME1|LINE|L1 -20499 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 642-64 chr20 19256803 19257099 + 3 NA intron (NR_024564, intron 6 of 7) MER33|DNA|hAT-Charlie 27645 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 243-469 chr9 22931898 22932001 + 3 NA Intergenic Intergenic 285749 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 527-34 chr10 76185904 76186192 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 403287 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 267-255 chr3 61125247 61125419 + 3 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 126119 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 409-301 chr8 129229477 129229663 + 3 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 11670 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 1509-2 chr9 96791902 96793003 + 3 NA Intergenic L1PREC2|LINE|L1 -14323 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 777-34 chr2 107627763 107628092 + 3 NA Intergenic L1MC3|LINE|L1 98508 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 718-76 chr5 102450176 102450629 + 3 NA intron (NM_173488, intron 6 of 13) L1PA15|LINE|L1 48599 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 567-2 chr1 41199783 41199995 + 3 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) -36872 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 425-221 chr5 13543760 13543948 + 3 NA Intergenic LTR8B|LTR|ERV1 400626 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 379-308 chr6 156152185 156152378 + 3 NA Intergenic Intergenic 205484 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 466-82 chr14 85647358 85647596 + 3 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 114128 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 500-105 chr17 34777506 34777705 + 3 NA Intergenic Intergenic 183855 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 383-342 chr6 112716916 112717109 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 369682 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 365-412 chr8 128250998 128251182 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 100974 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 493-246 chr5 104859142 104859340 + 3 NA Intergenic Intergenic -240233 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 606-77 chr2 16979743 16980043 + 3 NA Intergenic Intergenic -314059 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 446-53 chr10 106030167 106030322 + 3 NA Intergenic MIR|SINE|MIR -109921 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 748-15 chr10 86642389 86642786 + 3 NA Intergenic AluSx1|SINE|Alu -11960 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 397-198 chr22 49991251 49991439 + 3 NA TTS (NM_001371417) TTS (NM_001371417) 21420 NM_001371416 255-414 chr8 54282529 54282632 + 3 NA Intergenic Intergenic -48106 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 686-66 chr5 89198747 89199167 + 3 NA intron (NR_136219, intron 6 of 9) AluSz|SINE|Alu -294852 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 305-23 chr1 107165288 107165433 + 3 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 17291 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 500-125 chr2 27727168 27727376 + 3 NA intron (NR_160725, intron 2 of 2) AluSx|SINE|Alu 11149 NR_160725 105374378 NR_160725 LOC105374378 - uncharacterized LOC105374378 ncRNA 409-14 chr1 229209133 229209309 + 3 NA Intergenic MIR1_Amn|SINE|MIR -34420 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 751-21 chr15 47559783 47560243 + 3 NA intron (NM_001198999, intron 3 of 19) L1M4a2|LINE|L1 -157492 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 494-100 chr18 625036 625271 + 3 NA intron (NM_199167, intron 4 of 8) intron (NM_199167, intron 4 of 8) 8453 NM_199167 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 1351-3 chr3 26087601 26088626 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -214418 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 445-155 chr20 48097375 48097622 + 3 NA Intergenic Intergenic -107381 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 501-249 chr7 114884086 114884265 + 3 NA Intergenic Intergenic -37979 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 333-286 chr2 208757476 208757658 + 3 NA intron (NR_136588, intron 3 of 5) LTR33B|LTR|ERVL 214925 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 446-192 chr3 96368748 96369033 + 3 NA Intergenic L1M5|LINE|L1 8926 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 432-14 chr1 189228249 189228418 + 3 NA Intergenic Intergenic 1247677 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 253-213 chr2 230118891 230118992 + 3 NA Intergenic Intergenic -50017 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 385-251 chr3 121306758 121307022 + 3 NA intron (NM_001348343, intron 20 of 27) L1M4b|LINE|L1 239098 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 687-119 chr8 87514953 87515438 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 358820 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 267-196 chr2 108794822 108794985 + 3 NA intron (NM_144978, intron 5 of 14) intron (NM_144978, intron 5 of 14) 8132 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 463-289 chr8 110009649 110009812 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -33959 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 927-11 chr3 193966772 193967269 + 3 NA intron (NR_033944, intron 1 of 2) L1M6|LINE|L1 27218 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 329-110 chr12 13112319 13112461 + 3 NA Intergenic Intergenic -8723 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 421-209 chr4 43327203 43327435 + 3 NA Intergenic MER34A|LTR|ERV1 165224 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 576-101 chr21 19121757 19122074 + 3 NA Intergenic Intergenic -362103 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 514-31 chr10 82490215 82490470 + 3 NA intron (NR_163253, intron 3 of 10) L2a|LINE|L2 -257422 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 620-101 chr4 123931509 123931877 + 3 NA TTS (NR_027105) TTS (NR_027105) 157429 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 477-18 chr1 165170934 165171172 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 185188 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 400-63 chr11 116466368 116466644 + 3 NA Intergenic Intergenic -172916 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 473-153 chr20 7687980 7688250 + 3 NA Intergenic L1PB2|LINE|L1 252343 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 280-456 chrX 96907118 96907338 + 3 NA intron (NM_007309, intron 5 of 26) intron (NM_007309, intron 5 of 26) 23320 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 561-135 chr3 95112752 95113029 + 3 NA Intergenic L1M4|LINE|L1 174627 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 462-154 chr2 192986573 192986860 + 3 NA Intergenic L1MD|LINE|L1 236871 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 843-16 chr14 25359344 25359988 + 3 NA Intergenic Intergenic -309369 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 558-157 chr4 78843411 78843717 + 3 NA intron (NM_017593, intron 4 of 13) LTR89|LTR|ERVL? 67186 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 616-158 chr7 41409134 41409433 + 3 NA Intergenic Intergenic -284636 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 408-106 chr14 70483078 70483306 + 3 NA intron (NR_037933, intron 1 of 1) (TA)n|Simple_repeat|Simple_repeat 564 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 358-255 chr20 37827134 37827353 + 3 NA intron (NM_001281495, intron 12 of 16) L1ME2z|LINE|L1 -75884 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 299-267 chr22 33160094 33160307 + 3 NA Intergenic Intergenic 51671 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 280-290 chr4 72642206 72642335 + 3 NA Intergenic Intergenic -73049 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 1214-2 chr11 130734603 130735204 + 3 NA Intergenic Intergenic 61947 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 313-541 chr8 131013594 131013814 + 3 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 27205 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 449-71 chr14 20113334 20113575 + 3 NA Intergenic MIRc|SINE|MIR -4014 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 263-104 chr14 50042380 50042577 + 3 NA intron (NR_131171, intron 4 of 8) MLT1J2|LTR|ERVL-MaLR -34958 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 613-66 chr2 201737133 201737503 + 3 NA intron (NM_020919, intron 12 of 33) MER2|DNA|TcMar-Tigger -38674 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 498-140 chr2 196375560 196375798 + 3 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) -13502 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 488-57 chr12 1902624 1902820 + 3 NA intron (NM_172364, intron 6 of 37).2 L1MA3|LINE|L1 15930 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 450-97 chr15 97674772 97674959 + 3 NA Intergenic L1ME3C|LINE|L1 -114167 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 407-283 chr7 14144276 14144542 + 3 NA TTS (NM_001350716) TTS (NM_001350716) -152984 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 591-122 chr5 8039359 8039694 + 3 NA Intergenic L1PA15|LINE|L1 170378 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 527-209 chr5 68087976 68088310 + 3 NA Intergenic Intergenic -101733 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 490-313 chr9 70889943 70890173 + 3 NA intron (NM_001366143, intron 1 of 25) (TA)n|Simple_repeat|Simple_repeat -21006 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 860-14 chr14 79698033 79698522 + 3 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) 418897 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 575-173 chr6 93461097 93461407 + 3 NA Intergenic Intergenic -41670 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 592-116 chr3 118217209 118217546 + 3 NA Intergenic L1MA6|LINE|L1 -424391 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 562-194 chr6 131010778 131011025 + 3 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) 2708 NM_001350309 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 1246-2 chr14 50842296 50842843 + 3 NA Intergenic Intergenic -11448 NM_016350 51199 Hs.310429 NM_016350 ENSG00000100503 NIN SCKL7 ninein protein-coding 669-37 chr16 83445746 83446137 + 3 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -62405 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 440-125 chr2 118652574 118652753 + 3 NA Intergenic L1MB5|LINE|L1 -49697 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 413-304 chr8 82937890 82938063 + 3 NA intron (NR_134295, intron 2 of 3) L1PA15|LINE|L1 25872 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 850-10 chr12 1294184 1294636 + 3 NA intron (NR_027948, intron 15 of 19) intron (NR_027948, intron 15 of 19) -206081 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 503-227 chr5 26867801 26868133 + 3 NA Intergenic Intergenic 170619 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 490-155 chr2 139643619 139644030 + 3 NA Intergenic L1PA15-16|LINE|L1 746500 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 335-170 chr15 34093828 34093939 + 3 NA intron (NM_020154, intron 2 of 4) AluJo|SINE|Alu 7979 NM_020154 56851 Hs.160565 NM_020154 ENSG00000134153 EMC7 C11orf3|C15orf24|HT022|ORF1-FL1 ER membrane protein complex subunit 7 protein-coding 337-347 chr3 36292735 36292991 + 3 NA Intergenic MER33|DNA|hAT-Charlie -87624 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 497-68 chr13 52967941 52968225 + 3 NA Intergenic Intergenic -60730 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 444-283 chr9 92840702 92841031 + 3 NA Intergenic Intergenic 31255 NR_026868 138649 Hs.643597 NM_001010925 ENSG00000187984 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 538-248 chr8 139754983 139755178 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -51957 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 348-547 chr9 13556467 13556624 + 3 NA Intergenic Intergenic -125216 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 402-234 chr4 63067437 63067643 + 3 NA Intergenic L1MC1|LINE|L1 -905775 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1086-16 chr20 43028130 43028698 + 3 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 59671 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 589-35 chr15 59832199 59832643 + 3 NA Intergenic Intergenic -143101 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 400-52 chr11 47016480 47016645 + 3 NA intron (NR_103472, intron 2 of 7) L1M5|LINE|L1 79801 NM_001003677 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 638-12 chr10 29220741 29221108 + 3 NA Intergenic L1MB4|LINE|L1 -68146 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 803-23 chr2 34232332 34232785 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 165332 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 470-208 chr5 13765446 13765654 + 3 NA intron (NM_001369, intron 59 of 78) L1ME3|LINE|L1 178930 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 385-36 chr10 83714764 83714917 + 3 NA Intergenic L1MD1|LINE|L1 -37751 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 910-6 chr10 107208437 107209088 + 3 NA Intergenic Intergenic -44056 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 432 chr1 14231526 14231796 + 3 NA Intergenic Intergenic 188312 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 282-49 chr10 71153059 71153220 + 3 NA Intergenic Intergenic -59431 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 547-106 chr2 118293868 118294242 + 3 NA Intergenic L1M2|LINE|L1 -107669 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 777-72 chr8 131333840 131334330 + 3 NA Intergenic L1M4c|LINE|L1 -293176 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 464-182 chr4 63820940 63821174 + 3 NA Intergenic L2|LINE|L2 588393 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 492-3 chr1 63178281 63178560 + 3 NA intron (NR_038252, intron 6 of 11) intron (NR_038252, intron 6 of 11) 138837 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 497-49 chr11 113389698 113389979 + 3 NA intron (NM_178510, intron 1 of 7) intron (NM_178510, intron 1 of 7) 2059 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 511-235 chr6 120143805 120143987 + 3 NA Intergenic Intergenic 128717 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 977-19 chr8 136336980 136337687 + 3 NA Intergenic L1MCb|LINE|L1 -193465 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 952-20 chr3 192888625 192889314 + 3 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 28887 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 545-231 chr8 46493109 46493375 + 3 NA Intergenic ALR/Alpha|Satellite|centr 124401 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 565-5 chr1 87459808 87460075 + 3 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -88286 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 427-122 chr2 99901885 99902043 + 3 NA intron (NM_001025108, intron 6 of 23) L2a|LINE|L2 203619 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 430-4 chr1 92725869 92726111 + 3 NA intron (NM_001350198, intron 2 of 19) L1MEc|LINE|L1 59118 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 418-121 chr2 117073153 117073355 + 3 NA Intergenic Intergenic -741437 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 1126-10 chr5 123477836 123478568 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -33897 NM_001031812 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 632-121 chr8 127211256 127211523 + 3 NA intron (NR_108049, intron 1 of 1) L1ME4a|LINE|L1 7879 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLO5|CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 ncRNA 309-500 chr6 169059931 169060097 + 3 NA Intergenic L1M2|LINE|L1 -7772 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 540-80 chr15 83979250 83979475 + 3 NA intron (NM_207517, intron 20 of 29) intron (NM_207517, intron 20 of 29) -100825 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 525-158 chr3 51313268 51313567 + 3 NA intron (NM_004947, intron 31 of 52) intron (NM_004947, intron 31 of 52) -71874 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 458-38 chr11 84263009 84263315 + 3 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 10118 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 713-52 chr22 33790486 33790877 + 3 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 65695 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 954-42 chr5 179085044 179085550 + 3 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 24924 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 480-131 chr19 51965333 51965547 + 3 NA exon (NM_021632, exon 5 of 5) exon (NM_021632, exon 5 of 5) 16306 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 509-98 chr18 12998555 12998895 + 3 NA intron (NM_032142, intron 1 of 44) intron (NM_032142, intron 1 of 44) 7363 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 466-102 chr17 47770470 47770637 + 3 NA Intergenic Intergenic 37317 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 1002-7 chr20 16111391 16112124 + 3 NA Intergenic Intergenic -125875 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 479-240 chr8 64467272 64467459 + 3 NA Intergenic Intergenic 88216 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 580-30 chr11 114709098 114709429 + 3 NA Intergenic Charlie25|DNA|hAT-Charlie 30736 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 454-111 chr16 22812391 22812629 + 3 NA Intergenic MIR|SINE|MIR -1652 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 899-18 chr3 29025783 29026327 + 3 NA Intergenic L1MB3|LINE|L1 254884 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 112-16 chr16 64269267 64269314 + 3 NA Intergenic Intergenic 852773 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 752-62 chr5 112304173 112304565 + 3 NA intron (NM_001347887, intron 2 of 23) intron (NM_001347887, intron 2 of 23) 76086 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 471-161 chr22 47436094 47436265 + 3 NA Intergenic L1MDb|LINE|L1 50932 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 440-36 chr11 50530049 50530273 + 3 NA Intergenic ALR/Alpha|Satellite|centr 121014 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 853-19 chr2 173300153 173300491 + 3 NA Intergenic MER61E|LTR|ERV1 -18286 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 279-253 chr3 50239258 50239371 + 3 NA intron (NM_001282618, intron 1 of 7) intron (NM_001282618, intron 1 of 7) 3110 NM_002070 2771 Hs.77269 NM_002070 ENSG00000114353 GNAI2 GIP|GNAI2B|H_LUCA15.1|H_LUCA16.1 G protein subunit alpha i2 protein-coding 1901-2 chr14 100882853 100883690 + 3 NA TTS (NR_029696) TTS (NR_029696) 292 NR_029696 406914 NR_029696 ENSG00000207608 MIR127 MIRN127|miRNA127|mir-127 microRNA 127 ncRNA 396-316 chr6 124217151 124217318 + 3 NA intron (NM_001300737, intron 2 of 7) HAL1|LINE|L1 -65771 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 767-13 chr14 71962189 71962673 + 3 NA intron (NM_001370288, intron 1 of 16) intron (NM_001370288, intron 1 of 16) 28904 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 441-47 chr11 121735931 121736247 + 3 NA Intergenic L1MB3|LINE|L1 283775 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 554-189 chr7 29521610 29521917 + 3 NA Intergenic L1M2|LINE|L1 37947 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 538-32 chr10 108083573 108083805 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -14396 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 515-150 chr21 39783076 39783351 + 3 NA intron (NM_001080444, intron 5 of 8) L1MA5|LINE|L1 37806 NM_001080444 150084 Hs.422120 NM_001080444 ENSG00000183067 IGSF5 GSF5|JAM4 immunoglobulin superfamily member 5 protein-coding 667-28 chr14 56819865 56820247 + 3 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 6898 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 444-62 chr13 80512382 80512533 + 3 NA Intergenic Intergenic -171331 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 523-85 chr15 36274340 36274528 + 3 NA Intergenic Intergenic -305192 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 215-319 chr8 119083722 119083837 + 3 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -14997 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 814-35 chr2 106523792 106524234 + 3 NA intron (NM_001368307, intron 5 of 5) LOR1b|LTR|ERV1 36649 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 596-49 chr12 77154459 77154786 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -89053 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 981-25 chr5 102348216 102348695 + 3 NA Intergenic L1PB1|LINE|L1 -52171 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 455-227 chr5 92207410 92207681 + 3 NA Intergenic Intergenic -824228 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 636-138 chr7 71396813 71397220 + 3 NA intron (NM_022479, intron 3 of 10) L1MB7|LINE|L1 -89246 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 458-181 chr4 36423048 36423231 + 3 NA Intergenic LTR16A|LTR|ERVL 3289 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 477-225 chr4 63078076 63078271 + 3 NA Intergenic Intergenic -916408 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 511-47 chr12 44071083 44071283 + 3 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 235102 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 375-368 chr7 19502296 19502481 + 3 NA Intergenic L1PA10|LINE|L1 203048 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 1141-8 chr6 61512868 61513384 + 3 NA Intergenic ALR/Alpha|Satellite|centr -61004 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 635-102 chr7 62657594 62657970 + 3 NA Intergenic ALR/Alpha|Satellite|centr 646274 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 338-399 chr4 181174197 181174338 + 3 NA Intergenic Intergenic -15118 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 673 chr1 62583926 62584380 + 3 NA TTS (NM_001272002) TTS (NM_001272002) -13367 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 936-14 chr18 73047732 73048212 + 3 NA Intergenic Intergenic 178932 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 430-24 chr10 16024799 16025014 + 3 NA Intergenic Intergenic -164373 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 714-7 chr1 227721040 227721467 + 3 NA Intergenic LTR10F|LTR|ERV1 -6915 NM_001323933 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 689-102 chr9 30985323 30985690 + 3 NA Intergenic L1PA14|LINE|L1 395984 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 200-123 chr2 32402924 32403049 + 3 NA intron (NM_016252, intron 8 of 73) intron (NM_016252, intron 8 of 73) 45958 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 545-26 chr10 82243956 82244214 + 3 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -11165 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 260-50 chr10 53987050 53987204 + 3 NA intron (NM_001354411, intron 22 of 34) L1M6|LINE|L1 -499103 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 203-10 chr1 96186224 96186346 + 3 NA Intergenic Intergenic 187840 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 1063-13 chr17 55217807 55218347 + 3 NA Intergenic Intergenic -46883 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 189-166 chr5 113817399 113817517 + 3 NA Intergenic HAL1b|LINE|L1 303764 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 361-272 chr3 86128 86334 + 3 NA Intergenic Intergenic 74480 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 1324-3 chr2 124135506 124136419 + 3 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 110675 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 359-85 chr11 38644343 38644536 + 3 NA intron (NR_120554, intron 1 of 4) intron (NR_120554, intron 1 of 4) 1917 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 651-76 chr20 4307698 4308115 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -58619 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 432-69 chr12 119062022 119062314 + 3 NA intron (NM_194286, intron 1 of 12) Tigger3b|DNA|TcMar-Tigger 80627 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 460-71 chr12 119351525 119351811 + 3 NA intron (NM_178499, intron 1 of 13) MSTA|LTR|ERVL-MaLR 16939 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 564-15 chr10 44359858 44360218 + 3 NA Intergenic Intergenic 25059 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 507-79 chr14 30148102 30148398 + 3 NA Intergenic L1M2|LINE|L1 -220403 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 581-180 chr8 137333873 137334095 + 3 NA Intergenic Intergenic 79604 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 369-11 chr1 102085060 102085318 + 3 NA Intergenic Ricksha|DNA|MULE-MuDR -87955 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 334-3 chr1 33780017 33780185 + 3 NA intron (NM_052896, intron 12 of 69) intron (NM_052896, intron 12 of 69) -80374 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 798-35 chr21 34144945 34145372 + 3 NA Intergenic Intergenic -35519 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 620-120 chr6 117892900 117893290 + 3 NA Intergenic Intergenic -14169 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 428-47 chr12 37909031 37909260 + 3 NA Intergenic ALR/Alpha|Satellite|centr -407629 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 799-9 chr10 131258775 131259092 + 3 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 52788 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 696-103 chr7 121507960 121508368 + 3 NA Intergenic HERVIP10B3-int|LTR|ERV1 -111796 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 425-202 chr4 49089480 49089646 + 3 NA Intergenic ALR/Alpha|Satellite|centr 102921 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 962-18 chr5 7740322 7740777 + 3 NA intron (NM_020546, intron 14 of 24) intron (NM_020546, intron 14 of 24) 110584 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 693-51 chr2 5200282 5200684 + 3 NA Intergenic Intergenic 490635 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 736-7 chr1 223405505 223405958 + 3 NA Intergenic AluSc8|SINE|Alu 12316 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 489-85 chr14 101296903 101297199 + 3 NA Intergenic L1PREC2|LINE|L1 110871 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 718-45 chr2 167453602 167454044 + 3 NA Intergenic Intergenic 266451 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 620-104 chr5 10834831 10835085 + 3 NA Intergenic L1MC5a|LINE|L1 -73724 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 689-31 chr14 45833230 45833607 + 3 NA Intergenic SATR1|Satellite|Satellite -117816 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 280-54 chr10 66509471 66509639 + 3 NA intron (NM_001127384, intron 11 of 17) L1MA5A|LINE|L1 -416481 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 566-68 chr17 55978089 55978297 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -175282 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 417-7 chr1 68794782 68794951 + 3 NA Intergenic L2c|LINE|L2 -261032 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 660-30 chr15 24587008 24587441 + 3 NA intron (NR_026646, intron 8 of 8) L1M4|LINE|L1 29067 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 517-197 chr4 78266123 78266394 + 3 NA intron (NM_001166133, intron 7 of 41) MLT1L|LTR|ERVL-MaLR -22727 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 427-76 chr14 86118239 86118498 + 3 NA intron (NR_110155, intron 2 of 3) L1PREC2|LINE|L1 183690 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 745-56 chr5 173370878 173371299 + 3 NA Intergenic Intergenic 23633 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 517-204 chr4 186209271 186209459 + 3 NA intron (NM_207352, intron 10 of 10) intron (NM_207352, intron 10 of 10) 17798 NM_207352 285440 Hs.587231 NM_207352 ENSG00000145476 CYP4V2 BCD|CYP4AH1 cytochrome P450 family 4 subfamily V member 2 protein-coding 793-46 chr7 37367998 37368411 + 3 NA intron (NM_001206480, intron 1 of 21) L1ME3E|LINE|L1 -14536 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 1057-9 chr19 35227188 35227849 + 3 NA intron (NM_152481, intron 1 of 1) AluSx|SINE|Alu 1207 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 757-3 chr1 115998084 115998540 + 3 NA intron (NM_018420, intron 2 of 11) L1M1|LINE|L1 -21036 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 759-70 chr8 78948163 78948639 + 3 NA Intergenic LTR16A|LTR|ERVL 110872 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 755-49 chr4 176554647 176555072 + 3 NA Intergenic Intergenic 234893 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 391-248 chr3 189553971 189554140 + 3 NA Intergenic L1ME1|LINE|L1 -42691 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 323-373 chr4 66159645 66159842 + 3 NA Intergenic Intergenic -117081 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 1091-8 chr7 67466614 67467296 + 3 NA Intergenic Intergenic 130979 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 268-288 chr4 98163324 98163523 + 3 NA Intergenic HUERS-P1-int|LTR|ERV1 -19947 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 352-18 chr1 95882812 95883003 + 3 NA Intergenic MARNA|DNA|TcMar-Mariner -109161 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 571-138 chr5 101837979 101838191 + 3 NA Intergenic L1PA15|LINE|L1 458199 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 673-2 chr1 76660980 76661340 + 3 NA Intergenic L1MC1|LINE|L1 118107 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 426-263 chr6 169077314 169077483 + 3 NA Intergenic Intergenic 9612 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 439-10 chr1 101848037 101848283 + 3 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) -1080 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 458-36 chr11 55051566 55051797 + 3 NA Intergenic ALR/Alpha|Satellite|centr -210474 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 778-31 chr17 61635709 61636262 + 3 NA Intergenic L1MA4|LINE|L1 -44766 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 396-179 chr2 169677617 169677776 + 3 NA intron (NM_001085447, intron 2 of 8) L1ME1|LINE|L1 16709 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 598-159 chrX 85536579 85536909 + 3 NA Intergenic L1MA8|LINE|L1 -157079 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 224-284 chr6 136197910 136198082 + 3 NA Intergenic Intergenic 52315 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 524-31 chr10 58250732 58251024 + 3 NA intron (NM_152230, intron 1 of 5) L1MA4|LINE|L1 17016 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 494 chr1 14718340 14718612 + 3 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 119759 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 514-196 chr4 28271120 28271335 + 3 NA Intergenic L1ME3C|LINE|L1 -548355 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 638-158 chr8 112014909 112015321 + 3 NA Intergenic L1ME1|LINE|L1 -628378 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 1033-12 chr8 80948824 80949343 + 3 NA Intergenic Intergenic -74302 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 610-152 chr6 158903364 158903694 + 3 NA intron (NR_160979, intron 2 of 2) intron (NR_160979, intron 2 of 2) 15052 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 789-5 chr10 58451218 58451775 + 3 NA Intergenic Intergenic -61376 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 313-408 chr4 142411470 142411596 + 3 NA intron (NM_001331040, intron 5 of 25) intron (NM_001331040, intron 5 of 25) 435002 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 693-69 chr3 99219366 99219615 + 3 NA Intergenic L1MA3|LINE|L1 -317795 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 417-268 chr7 85371772 85372014 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -49229 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 688-61 chr2 58405399 58405775 + 3 NA Intergenic Intergenic -115166 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 482-236 chr7 11273446 11273682 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 299692 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 557-23 chr10 112074059 112074263 + 3 NA Intergenic Intergenic 109604 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 222-149 chr18 56048727 56048820 + 3 NA intron (NR_146511, intron 1 of 2) intron (NR_146511, intron 1 of 2) 6495 NR_146510 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 403-120 chr16 48583074 48583324 + 3 NA intron (NM_153029, intron 1 of 6) L1MA8|LINE|L1 26981 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 477-129 chr19 12337393 12337719 + 3 NA Intergenic Intergenic -3923 NM_001363608 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 741-45 chr4 31535853 31536232 + 3 NA intron (NR_149121, intron 1 of 2) L1M2|LINE|L1 29498 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 625-101 chr7 36848061 36848446 + 3 NA Intergenic Intergenic 71179 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 1194-7 chr7 105732245 105732820 + 3 NA intron (NM_020725, intron 3 of 11) intron (NM_020725, intron 3 of 11) -53370 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 209-120 chr16 78622637 78622790 + 3 NA intron (NM_001291997, intron 7 of 7) MLT1E1A|LTR|ERVL-MaLR 523059 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 439-179 chr3 44250789 44251047 + 3 NA intron (NM_001145030, intron 2 of 19) intron (NM_001145030, intron 2 of 19) 9032 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 258-253 chr3 36675397 36675542 + 3 NA Intergenic Intergenic 64392 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 570-194 chr8 65423970 65424254 + 3 NA Intergenic Intergenic 138554 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 512-292 chrUn_KI270756v1 14029 14260 + 3 NA NA (CCATTCCATT)n|Simple_repeat|Simple_repeat NA NA 670-125 chr8 120304160 120304595 + 3 NA intron (NM_021110, intron 36 of 47) L1PREC2|LINE|L1 140773 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 1035-15 chr9 75288511 75289145 + 3 NA Intergenic Intergenic 200314 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 454-308 chr8 71222155 71222397 + 3 NA intron (NM_001370336, intron 12 of 17) intron (NM_001370336, intron 12 of 17) 134430 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 320-223 chr18 33042121 33042286 + 3 NA intron (NM_001308126, intron 21 of 23) L1MC4|LINE|L1 -269180 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 373-59 chr10 75305734 75305968 + 3 NA intron (NR_038226, intron 2 of 3) L1MB3|LINE|L1 9468 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 282-145 chr15 60550745 60550900 + 3 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 41704 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 362-442 chr8 104707763 104707929 + 3 NA Intergenic Intergenic -118822 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 391-132 chr16 84187702 84187877 + 3 NA promoter-TSS (NM_001243159) promoter-TSS (NM_001243159) -719 NM_001243157 9013 Hs.153022 NM_005679 ENSG00000103168 TAF1C MGC:39976|SL1|TAFI110|TAFI95 TATA-box binding protein associated factor, RNA polymerase I subunit C protein-coding 493-214 chr3 162339570 162339805 + 3 NA Intergenic L1ME3Cz|LINE|L1 842879 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 696-37 chr14 19916452 19916850 + 3 NA Intergenic MER54B|LTR|ERVL -3956 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 768-7 chr10 43840760 43841204 + 3 NA Intergenic L1M5|LINE|L1 -4324 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 526-163 chr3 3453719 3454048 + 3 NA Intergenic Intergenic -274166 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 355-539 chr9 105366600 105366783 + 3 NA intron (NM_001330731, intron 12 of 15) intron (NM_001330731, intron 12 of 15) -81343 NM_001145313 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 508-235 chr8 89650920 89651171 + 3 NA Intergenic L1M2c|LINE|L1 106666 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 492-74 chr13 35359095 35359338 + 3 NA intron (NM_015678, intron 38 of 57) intron (NM_015678, intron 38 of 57) 117473 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 421-178 chr3 4044462 4044714 + 3 NA Intergenic Intergenic -243713 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 580-200 chr8 119620639 119620957 + 3 NA intron (NM_001330600, intron 4 of 25) intron (NM_001330600, intron 4 of 25) 18041 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 623-83 chr3 74573502 74573920 + 3 NA Intergenic L1MB7|LINE|L1 -52571 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 731-35 chr18 54601887 54602340 + 3 NA Intergenic L1MD|LINE|L1 10954 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 428-55 chr13 58252424 58252763 + 3 NA Intergenic Intergenic -19476 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 664-53 chr2 80422346 80422670 + 3 NA intron (NM_001282599, intron 3 of 11) L1MEg1|LINE|L1 109129 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 388-191 chr20 56604645 56604797 + 3 NA Intergenic L1MC5a|LINE|L1 -24585 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 827-40 chr4 184042381 184042720 + 3 NA Intergenic L1MB3|LINE|L1 137243 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 750-67 chr8 60186124 60186556 + 3 NA non-coding (NR_135821, exon 10 of 10) non-coding (NR_135821, exon 10 of 10) 95060 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 488-245 chr6 130868599 130868827 + 3 NA intron (NM_001252660, intron 12 of 16) intron (NM_001252660, intron 12 of 16) 41308 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 477-181 chr20 61111634 61111918 + 3 NA Intergenic Intergenic 32712 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 635-88 chr5 46288747 46288985 + 3 NA Intergenic ALR/Alpha|Satellite|centr -592486 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 716-61 chr5 16048774 16049135 + 3 NA Intergenic Intergenic 113772 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 505-159 chr2 124499138 124499431 + 3 NA intron (NM_001367498, intron 7 of 23) intron (NM_001367498, intron 7 of 23) 473997 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 463-225 chr5 16316287 16316469 + 3 NA Intergenic Intergenic 124724 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 591-13 chr10 54876189 54876530 + 3 NA intron (NM_001354404, intron 4 of 34) Tigger1|DNA|TcMar-Tigger -75068 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 574-106 chr3 44538808 44539105 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie -16237 NM_001288592 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 368-263 chr20 16663349 16663543 + 3 NA Intergenic MER34A|LTR|ERV1 -66580 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 439-84 chr13 74654497 74654643 + 3 NA Intergenic Intergenic 101727 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 308-527 chr8 137307184 137307308 + 3 NA Intergenic Intergenic 106342 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 864-45 chr7 94842688 94843281 + 3 NA Intergenic AluSx1|SINE|Alu -64610 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 784-22 chr17 49004379 49004790 + 3 NA intron (NM_001160423, intron 2 of 12) intron (NM_001160423, intron 2 of 12) 7199 NM_006546 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 524-143 chr22 48262374 48262555 + 3 NA Intergenic Intergenic -11900 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 456-235 chr4 136383346 136383626 + 3 NA Intergenic MLT2B1|LTR|ERVL -469806 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 825-57 chr8 140215769 140216350 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -115524 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 505-41 chr10 124317238 124317568 + 3 NA Intergenic Intergenic 101520 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 585-49 chr15 54547583 54547799 + 3 NA intron (NM_001329919, intron 26 of 31) intron (NM_001329919, intron 26 of 31) -509056 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 650-64 chr20 11491018 11491460 + 3 NA Intergenic MIRb|SINE|MIR -217856 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 473-181 chr3 135848538 135848861 + 3 NA Intergenic L1MEd|LINE|L1 -117029 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 488-35 chr10 118631633 118631820 + 3 NA Intergenic L1ME3Cz|LINE|L1 -36078 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 479 chr1 25942700 25942992 + 3 NA Intergenic AluJb|SINE|Alu -35969 NM_203399 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 549-93 chr19 30181793 30182047 + 3 NA Intergenic L1MEf|LINE|L1 -190464 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 413-90 chr14 85494231 85494396 + 3 NA Intergenic MIRb|SINE|MIR -35712 NR_144386 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 567-58 chr15 44075556 44075877 + 3 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) 118730 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 323-215 chr19 34026989 34027138 + 3 NA Intergenic MIR|SINE|MIR -145441 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 515-149 chr21 36877379 36877619 + 3 NA intron (NM_001352515, intron 6 of 10) L1ME2z|LINE|L1 84859 NM_001352518 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 699-58 chr2 219412525 219412948 + 3 NA Intergenic L1ME4b|LINE|L1 -5641 NM_001927 1674 Hs.594952 NM_001927 ENSG00000175084 DES CDCD3|CMD1F|CSM1|CSM2|LGMD1D|LGMD1E|LGMD2R desmin protein-coding 444-229 chr6 161429764 161429965 + 3 NA intron (NM_004562, intron 9 of 11) LTR40a|LTR|ERVL -41113 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 197-135 chr3 68802318 68802410 + 3 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 130183 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 618-51 chr18 79931896 79932224 + 3 NA intron (NM_001146345, intron 3 of 4) L1M4b|LINE|L1 19593 NM_025078 80148 Hs.288284 NM_025078 ENSG00000122490 SLC66A2 PQLC1 solute carrier family 66 member 2 protein-coding 181-157 chr8 82630353 82630439 + 3 NA Intergenic Intergenic -281708 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 468-79 chr14 51422431 51422655 + 3 NA Intergenic Intergenic -25408 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 347-491 chr8 29512605 29512819 + 3 NA Intergenic Intergenic -162028 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 358-17 chr1 176344415 176344568 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -118684 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 809-19 chr19 39786680 39787049 + 3 NA TTS (NM_001143832) TTS (NM_001143832) 10270 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 628-16 chr1 165849564 165849844 + 3 NA intron (NM_012474, intron 1 of 6) intron (NM_012474, intron 1 of 6) 22090 NM_001363568 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 464-175 chr3 182557926 182558140 + 3 NA Intergenic Intergenic -50909 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 357-81 chr12 25716632 25716835 + 3 NA Intergenic Intergenic -68155 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 502-153 chr2 234185613 234185809 + 3 NA Intergenic Intergenic 135009 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 458-17 chr10 14285334 14285695 + 3 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 45370 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 348-275 chr21 23163403 23163589 + 3 NA Intergenic Kanga1d|DNA|TcMar-Tc2 84212 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 506-199 chr4 30274759 30274950 + 3 NA Intergenic L1PB4|LINE|L1 -445515 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 593-57 chr17 14954470 14954864 + 3 NA Intergenic MER74A|LTR|ERVL -60138 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 658-82 chr3 119541536 119541792 + 3 NA intron (NM_005191, intron 3 of 6) MER5A1|DNA|hAT-Charlie 17950 NM_005191 941 Hs.838 NM_005191 ENSG00000121594 CD80 B7|B7-1|B7.1|BB1|CD28LG|CD28LG1|LAB7 CD80 molecule protein-coding 582-132 chr5 165118100 165118464 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 648003 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 940-2 chr1 237898035 237898530 + 3 NA intron (NR_027247, intron 4 of 11) MER5A|DNA|hAT-Charlie -7360 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 546-171 chr4 66262045 66262294 + 3 NA Intergenic L1MCb|LINE|L1 -14655 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 458-104 chr18 1914436 1914710 + 3 NA Intergenic L1PA15-16|LINE|L1 -554944 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 291-200 chr19 52363366 52363558 + 3 NA intron (NM_001161425, intron 5 of 5) L1M4c|LINE|L1 -6461 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 468-184 chr22 27348107 27348403 + 3 NA Intergenic MER113|DNA|hAT-Charlie 37604 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 272-357 chr5 110649741 110649930 + 3 NA intron (NM_001039763, intron 2 of 13) MIR|SINE|MIR 76836 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 993-6 chr12 119132761 119133371 + 3 NA intron (NM_194286, intron 8 of 12) intron (NM_194286, intron 8 of 12) 43418 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 712-38 chr19 36397773 36398159 + 3 NA intron (NM_001321917, intron 4 of 4) L1MD|LINE|L1 -18765 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 452-113 chr19 27718578 27718831 + 3 NA Intergenic HSAT4|Satellite|centr -74727 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 513-3 chr1 56975838 56976145 + 3 NA Intergenic Intergenic -9851 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 1025-20 chr8 128163030 128163633 + 3 NA Intergenic Intergenic 13215 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 660-12 chr10 130496400 130496705 + 3 NA Intergenic Intergenic 360143 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 211-134 chr2 12465829 12465917 + 3 NA intron (NR_110196, intron 4 of 5) L1MC4a|LINE|L1 -250999 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 334-409 chr5 12012875 12013091 + 3 NA Intergenic Intergenic -108537 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 275-3 chr1 41941956 41942119 + 3 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -23115 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 440-119 chr2 71762789 71762968 + 3 NA Intergenic Intergenic 296179 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 401-15 chr1 213655475 213655659 + 3 NA Intergenic Intergenic -269182 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 459-220 chr4 108947636 108947927 + 3 NA intron (NM_001256074, intron 6 of 31) intron (NM_001256074, intron 6 of 31) -184728 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 235-405 chrX 50522772 50522893 + 3 NA Intergenic Intergenic -52007 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 722-18 chr11 11719632 11720132 + 3 NA Intergenic Intergenic -63160 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 430-152 chr2 133635708 133635953 + 3 NA Intergenic Intergenic -67367 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 478-257 chr6 137664715 137664960 + 3 NA promoter-TSS (NR_125867) promoter-TSS (NR_125867) -809 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 694-91 chr3 146302726 146303216 + 3 NA Intergenic L1M1|LINE|L1 -51792 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 528-169 chr3 180726566 180726881 + 3 NA intron (NR_109986, intron 10 of 13) MLT1A|LTR|ERVL-MaLR -47234 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 328-608 chr9 89801639 89801837 + 3 NA Intergenic Intergenic 161955 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 559-93 chr2 77953347 77953670 + 3 NA intron (NR_110288, intron 1 of 3) L1MA3|LINE|L1 1518 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 485-130 chr2 57788588 57788762 + 3 NA Intergenic L1MA1|LINE|L1 -118976 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 700-3 chr1 62057782 62058213 + 3 NA intron (NM_001350145, intron 31 of 43) intron (NM_001350145, intron 31 of 43) -20789 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 436-65 chr12 46721868 46722046 + 3 NA Intergenic Intergenic 104040 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 918-33 chrX 99877054 99877577 + 3 NA Intergenic L1PA7|LINE|L1 532958 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 708-59 chr5 53688632 53689088 + 3 NA Intergenic L1PA11|LINE|L1 128221 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 894-50 chr8 90965390 90965984 + 3 NA intron (NM_001363275, intron 4 of 5) L1MB5|LINE|L1 19390 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 518-112 chr18 4936026 4936373 + 3 NA Intergenic L1MEc|LINE|L1 -144983 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 576-133 chr5 40217586 40217938 + 3 NA Intergenic MER44C|DNA|TcMar-Tigger 165471 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 995-16 chr3 175049409 175049789 + 3 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 65643 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 365-141 chr16 56211989 56212132 + 3 NA intron (NM_138736, intron 2 of 7) intron (NM_138736, intron 2 of 7) -17535 NR_026889 26077 Hs.721567 NR_026889 ENSG00000261439 DKFZP434H168 - uncharacterized LOC26077 ncRNA 599-4 chr1 92654579 92654971 + 3 NA intron (NM_005665, intron 11 of 17) L1PB4|LINE|L1 130333 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 489-235 chr7 30012526 30012744 + 3 NA non-coding (NR_046479, exon 3 of 3) non-coding (NR_046479, exon 3 of 3) 14067 NR_046479 55033 Hs.390838 NM_017946 ENSG00000106080 FKBP14 EDSKMH|EDSKSCL2|FKBP22|IPBP12 FKBP prolyl isomerase 14 protein-coding 627-32 chr14 70086800 70087172 + 3 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -6769 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 499-152 chr21 27413525 27413721 + 3 NA Intergenic Intergenic -308756 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 947-32 chr9 104571731 104572256 + 3 NA Intergenic LTR50|LTR|ERVL 2825 NM_001004483 138802 Hs.553599 NM_001004483 ENSG00000186943 OR13C8 OR37H|OR9-10 olfactory receptor family 13 subfamily C member 8 protein-coding 384-67 chr12 7170875 7171047 + 3 NA Intergenic MER66-int|LTR|ERV1 -17724 NM_001351124 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 629-94 chr4 174877196 174877573 + 3 NA Intergenic HERVL-int|LTR|ERVL -40974 NM_001278125 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 375-13 chr1 82992265 82992426 + 3 NA intron (NR_147074, intron 3 of 10) MIRb|SINE|MIR -6137 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 518-189 chr3 176070504 176070749 + 3 NA Intergenic Intergenic -173925 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 547-174 chr5 17956130 17956322 + 3 NA Intergenic Intergenic 148952 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 637-108 chr7 38002090 38002453 + 3 NA Intergenic L1MEf|LINE|L1 80952 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 587-57 chr16 73309952 73310220 + 3 NA Intergenic AluSg|SINE|Alu -76719 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 538-101 chr19 57133186 57133470 + 3 NA TTS (NM_052882) TTS (NM_052882) 11874 NM_052882 114026 Hs.348622 NM_052882 ENSG00000141946 ZIM3 ZNF264|ZNF657 zinc finger imprinted 3 protein-coding 775-50 chr2 217703172 217703613 + 3 NA intron (NR_026597, intron 1 of 12) MIRb|SINE|MIR 53201 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 740-44 chr2 165879956 165880356 + 3 NA intron (NM_024753, intron 27 of 28) intron (NM_024753, intron 27 of 28) -8215 NR_045375 100506124 Hs.709870 NR_045375 LOC100506124 - uncharacterized LOC100506124 ncRNA 240-55 chr10 64004286 64004379 + 3 NA Intergenic L1MC5a|LINE|L1 -482442 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 491-86 chr16 78624598 78624925 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 525107 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 1038-3 chr12 26302153 26302782 + 3 NA Intergenic Intergenic 106894 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 286-413 chr7 38167262 38167409 + 3 NA Intergenic L1MB2|LINE|L1 -10910 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 382-320 chr5 22571601 22571827 + 3 NA intron (NM_004061, intron 1 of 14) Tigger1|DNA|TcMar-Tigger 281630 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 522-182 chr3 137563808 137564039 + 3 NA Intergenic L1MEj|LINE|L1 -200392 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 253-289 chr4 32722090 32722276 + 3 NA Intergenic L1MCb|LINE|L1 371145 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 257-445 chr9 137908581 137908683 + 3 NA intron (NM_001243812, intron 3 of 45) AluY|SINE|Alu -16062 NR_121583 100133077 Hs.640081 NR_121583 ENSG00000203987 LOC100133077 - uncharacterized LOC100133077 ncRNA 633-94 chr5 7471602 7472067 + 3 NA intron (NM_020546, intron 2 of 24) L1ME4a|LINE|L1 75696 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 582-134 chr6 55979017 55979350 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -103593 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 299-23 chr1 116745248 116745410 + 3 NA Intergenic HERVIP10B3-int|LTR|ERV1 -9101 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 348-438 chr5 165508704 165508910 + 3 NA Intergenic L1M4|LINE|L1 1038528 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 635-45 chr19 27624951 27625374 + 3 NA Intergenic ALR/Alpha|Satellite|centr -168269 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 456-194 chr3 6778876 6779058 + 3 NA intron (NR_110125, intron 2 of 3) intron (NR_110125, intron 2 of 3) 26482 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 472-306 chr8 18334684 18334873 + 3 NA Intergenic Intergenic -56504 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 789-37 chr5 20535153 20535529 + 3 NA intron (NM_001349558, intron 1 of 15) MLT1E2|LTR|ERVL-MaLR 40372 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 846-52 chr7 16384658 16385183 + 3 NA intron (NM_001101426, intron 2 of 9) L1M4b|LINE|L1 36618 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 425-320 chr8 134135030 134135214 + 3 NA Intergenic MIRb|SINE|MIR 248626 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 296-178 chr16 73593343 73593510 + 3 NA Intergenic L1MEd|LINE|L1 206621 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 449-115 chr2 25471088 25471360 + 3 NA intron (NM_033147, intron 10 of 19) intron (NM_033147, intron 10 of 19) -128634 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 693-81 chr5 39989371 39989816 + 3 NA Intergenic L1ME3E|LINE|L1 -62698 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 507-118 chr2 29471467 29471724 + 3 NA intron (NM_004304, intron 4 of 28) L1ME3|LINE|L1 3782 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 711-64 chr6 133116823 133117303 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 28983 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 977-12 chr3 135228176 135228833 + 3 NA intron (NM_004441, intron 12 of 15) intron (NM_004441, intron 12 of 15) 433244 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 303-295 chr3 134346018 134346211 + 3 NA Intergenic MIRb|SINE|MIR 21748 NR_106885 102466744 NR_106885 ENSG00000277723 MIR6827 hsa-mir-6827 microRNA 6827 ncRNA 501-218 chr5 140778188 140778464 + 3 NA Intergenic Intergenic -7810 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 336-260 chr2 38563820 38563976 + 3 NA 3' UTR (NM_001142650, exon 14 of 14) 3' UTR (NM_001142650, exon 14 of 14) 39030 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 461-68 chr12 129019383 129019573 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -90212 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 587-89 chr20 51146762 51146973 + 3 NA Intergenic L1ME3A|LINE|L1 -123760 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 469-275 chr8 33835179 33835359 + 3 NA Intergenic MamRep137|DNA|TcMar-Tigger -235163 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 342-518 chr8 98956930 98957077 + 3 NA Intergenic Intergenic 12561 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 454-6 chr1 70771174 70771465 + 3 NA intron (NR_125938, intron 5 of 6) L1PA14|LINE|L1 64866 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 467-56 chr11 118086343 118086572 + 3 NA intron (NM_001173552, intron 1 of 11) intron (NM_001173552, intron 1 of 11) 506 NM_001354434 100526771 Hs.627426 NM_001354434 SMIM35 TMPRSS4-AS1 small integral membrane protein 35 protein-coding 386-124 chr16 62160039 62160242 + 3 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -123702 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 509-194 chr5 63597368 63597610 + 3 NA Intergenic L1M5|LINE|L1 364803 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 370-199 chr19 16814412 16814588 + 3 NA intron (NM_001347994, intron 18 of 18) MIRb|SINE|MIR -14898 NM_015260 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 659-12 chr11 15351707 15352011 + 3 NA Intergenic L1ME1|LINE|L1 202757 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 1090-6 chr19 24391264 24391801 + 3 NA Intergenic ALR/Alpha|Satellite|centr -228085 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 787-34 chr4 40046380 40046810 + 3 NA intron (NR_027277, intron 1 of 2) intron (NR_027277, intron 1 of 2) -10255 NM_018177 55728 Hs.391463 NM_018177 ENSG00000078177 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 390-285 chr5 22225081 22225240 + 3 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -11310 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 508-250 chr8 144613129 144613380 + 3 NA intron (NM_001308207, intron 1 of 11) L1MEc|LINE|L1 249 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 336-521 chr7 69066125 69066279 + 3 NA Intergenic L1MD2|LINE|L1 531422 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 510-17 chr1 199100391 199100616 + 3 NA Intergenic Intergenic -48095 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 655-33 chr13 73770868 73771235 + 3 NA intron (NM_007249, intron 5 of 7) intron (NM_007249, intron 5 of 7) 206807 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 513-170 chr22 26879676 26879961 + 3 NA intron (NR_146604, intron 4 of 5) MER97a|DNA|hAT-Tip100 19607 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 611-68 chr19 24405511 24405824 + 3 NA Intergenic ALR/Alpha|Satellite|centr -242220 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 626-20 chr10 111949625 111949863 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 234021 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 686-86 chr8 134933521 134933876 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 83763 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 557-208 chr8 124654827 124655113 + 3 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 73503 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 370-291 chr21 46340283 46340478 + 3 NA intron (NM_001315529, intron 3 of 46) L1MEg|LINE|L1 15713 NM_001315529 5116 Hs.474069 NM_006031 ENSG00000160299 PCNT KEN|MOPD2|PCN|PCNT2|PCNTB|PCTN2|SCKL4 pericentrin protein-coding 644-77 chr5 82963476 82963815 + 3 NA Intergenic Intergenic 100692 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 532-54 chr12 115848342 115848601 + 3 NA Intergenic L1MC5a|LINE|L1 300183 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 614-135 chr8 91732870 91733187 + 3 NA Intergenic Intergenic 284652 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 293-268 chr3 95035310 95035428 + 3 NA Intergenic L1PB2|LINE|L1 97106 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 468-311 chr8 57409098 57409381 + 3 NA Intergenic L1MC3|LINE|L1 65452 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 473-31 chr10 60925668 60925972 + 3 NA intron (NM_001350908, intron 2 of 11) L1MA5|LINE|L1 18365 NM_001350904 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 328-298 chr2 212572114 212572267 + 3 NA Intergenic Intergenic -33388 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 521-178 chr4 59927717 59928137 + 3 NA Intergenic L1MA2|LINE|L1 914354 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 250-447 chr8 137774099 137774199 + 3 NA Intergenic Intergenic 309396 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 572-90 chr2 99797082 99797372 + 3 NA intron (NM_001025108, intron 7 of 23) L1ME1|LINE|L1 -307210 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 379-323 chr7 106190480 106190696 + 3 NA Intergenic MIR|SINE|MIR -78012 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 551-14 chr10 44330849 44331157 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 38253 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 563-21 chr10 75114805 75115117 + 3 NA intron (NM_144660, intron 1 of 4) intron (NM_144660, intron 1 of 4) 3305 NM_001174156 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 436-227 chr5 4328881 4329095 + 3 NA Intergenic Intergenic -444493 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 488-240 chr6 115578293 115578527 + 3 NA Intergenic LTR85a|LTR|Gypsy? 65425 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 688-92 chr6 9261072 9261511 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 609082 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 636-58 chr17 61183251 61183586 + 3 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 184286 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 1070-7 chr12 133023642 133024215 + 3 NA 3' UTR (NM_001330513, exon 5 of 5) 3' UTR (NM_001330513, exon 5 of 5) 13294 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 299-457 chr8 102073358 102073461 + 3 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 50925 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 455-201 chr4 175132764 175132956 + 3 NA Intergenic Intergenic 214502 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 496-155 chr2 236799197 236799479 + 3 NA Intergenic Intergenic 229513 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 303-254 chr20 54018187 54018330 + 3 NA intron (NM_001366297, intron 4 of 8) L2a|LINE|L2 40762 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 508-172 chr4 95208621 95208820 + 3 NA intron (NM_003728, intron 10 of 15) L3|LINE|CR1 117229 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 414-268 chr5 64413136 64413433 + 3 NA Intergenic Intergenic -92731 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 645-106 chr6 50376628 50376973 + 3 NA Intergenic L1MB8|LINE|L1 -326871 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 743-3 chr1 68952003 68952323 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -103735 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 568-130 chr3 19820253 19820509 + 3 NA Intergenic L2b|LINE|L2 113836 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 364-82 chr11 21633923 21634104 + 3 NA Intergenic L2b|LINE|L2 -559072 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 437-77 chr14 70835019 70835233 + 3 NA Intergenic Intergenic -25613 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 588-21 chr11 48665776 48666146 + 3 NA Intergenic ALR/Alpha|Satellite|centr 177168 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 477-27 chr1 227136260 227136486 + 3 NA intron (NM_001366019, intron 10 of 36) L1ME3|LINE|L1 182119 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 591-127 chr5 24360159 24360494 + 3 NA Intergenic Intergenic 284652 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 797 chr1 34404044 34404475 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR 227352 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 448-113 chr2 102859813 102860106 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 35763 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 610-61 chr16 22875799 22876160 + 3 NA intron (NM_006043, intron 1 of 1) Tigger3b|DNA|TcMar-Tigger 61817 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 800-58 chr7 49699375 49699832 + 3 NA Intergenic Intergenic -74035 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 239-372 chr7 45283981 45284137 + 3 NA Intergenic AluSz|SINE|Alu 126268 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 342-370 chr4 126636902 126637076 + 3 NA Intergenic Intergenic -995968 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 333-499 chr6 45748680 45748879 + 3 NA Intergenic Intergenic 188818 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 479-282 chrX 57358203 57358525 + 3 NA intron (NR_148564, intron 5 of 11) L1MB1|LINE|L1 71510 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 551-107 chr20 53946929 53947181 + 3 NA intron (NM_001366297, intron 8 of 8) (AGTATAT)n|Simple_repeat|Simple_repeat -71346 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 516-166 chr3 18291035 18291316 + 3 NA Intergenic L1ME4a|LINE|L1 134164 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 424-264 chr7 86060345 86060499 + 3 NA Intergenic L1MA5A|LINE|L1 -583487 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 312-275 chr2 226220225 226220396 + 3 NA Intergenic Intergenic 77516 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 673-45 chr18 75255637 75255993 + 3 NA intron (NM_001308210, intron 1 of 1) intron (NM_001308210, intron 1 of 1) 44286 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 227-306 chr6 34074665 34074814 + 3 NA intron (NM_001282847, intron 2 of 9) intron (NM_001282847, intron 2 of 9) 31228 NM_001256813 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 625-116 chr8 111924090 111924488 + 3 NA Intergenic Intergenic 547650 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 1084-14 chr3 192505448 192506011 + 3 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -9293 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 566-156 chr5 54337589 54337968 + 3 NA intron (NR_126379, intron 1 of 4) L1M2|LINE|L1 16834 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 531-205 chr5 165510749 165511060 + 3 NA Intergenic L1MEg2|LINE|L1 1040625 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 312-377 chr4 86691471 86691590 + 3 NA intron (NM_080685, intron 5 of 47) intron (NM_080685, intron 5 of 47) 97215 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 1021-16 chr9 79983134 79983715 + 3 NA intron (NR_121212, intron 2 of 4) intron (NR_121212, intron 2 of 4) 8401 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 601-109 chr4 75282492 75282820 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -71420 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 618-107 chr6 62648803 62649155 + 3 NA Intergenic LTR25-int|LTR|ERV1 -362752 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 252-290 chr4 38999896 39000065 + 3 NA intron (NM_001303228, intron 1 of 6) MLT1D|LTR|ERVL-MaLR 32429 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 412-346 chr9 90387873 90388049 + 3 NA intron (NR_109795, intron 1 of 2) intron (NR_109795, intron 1 of 2) 45528 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 298-275 chr22 25917684 25917804 + 3 NA intron (NM_001318245, intron 33 of 43) L1ME3Cz|LINE|L1 175556 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 473-179 chr3 116735144 116735330 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 25449 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 407-179 chr22 33363687 33363860 + 3 NA intron (NM_133642, intron 9 of 14) MER44B|DNA|TcMar-Tigger 72896 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 653-16 chr10 56460173 56460544 + 3 NA Intergenic Intergenic -99085 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 559-142 chr4 141495229 141495577 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -141180 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 657-73 chr5 1756310 1756710 + 3 NA Intergenic L1M5|LINE|L1 43327 NM_032479 64979 Hs.719465 NM_032479 ENSG00000171421 MRPL36 BRIP1|L36mt|MRP-L36|PRPL36|RPMJ mitochondrial ribosomal protein L36 protein-coding 418-223 chr5 100474608 100474878 + 3 NA Intergenic L1MEf|LINE|L1 -60631 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 351-101 chr12 125418326 125418459 + 3 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 91776 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 656-139 chr9 89984119 89984540 + 3 NA intron (NR_109791, intron 2 of 2) intron (NR_109791, intron 2 of 2) 14913 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 500-238 chr5 151361534 151361729 + 3 NA Intergenic L1M3f|LINE|L1 -14072 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 497-250 chr6 95811769 95812030 + 3 NA Intergenic L1MD1|LINE|L1 -204075 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 545-39 chr11 74887270 74887584 + 3 NA intron (NM_001270381, intron 8 of 15) L1PREC2|LINE|L1 61664 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 377-196 chr2 39582200 39582326 + 3 NA intron (NR_037875, intron 5 of 5) L1MA4|LINE|L1 -83235 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 499-215 chr5 156679297 156679618 + 3 NA intron (NM_001128209, intron 6 of 7) MER91B|DNA|hAT-Tip100 -170838 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 494-323 chrX 133917369 133917563 + 3 NA intron (NM_001164619, intron 1 of 6) intron (NM_001164619, intron 1 of 6) 20023 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 321-428 chr4 79114952 79115108 + 3 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 143282 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 426-260 chr6 148725872 148726109 + 3 NA Intergenic L1ME1|LINE|L1 -21040 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 659-127 chr9 79097065 79097318 + 3 NA Intergenic L1M4|LINE|L1 48475 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 495-152 chr3 41572855 41573068 + 3 NA intron (NR_136342, intron 29 of 34) intron (NR_136342, intron 29 of 34) 373456 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 480-252 chr6 67192983 67193230 + 3 NA Intergenic Intergenic -862245 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 540-91 chr16 59553538 59553875 + 3 NA Intergenic Intergenic 201485 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 542-218 chr8 54257696 54257959 + 3 NA Intergenic Intergenic -72859 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 444-273 chr8 137471098 137471300 + 3 NA Intergenic Intergenic -57611 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 954-14 chr14 99709510 99709872 + 3 NA intron (NM_006668, intron 7 of 14) L1MA4A|LINE|L1 25393 NM_006668 10858 Hs.25121 NM_006668 ENSG00000036530 CYP46A1 CP46|CYP46 cytochrome P450 family 46 subfamily A member 1 protein-coding 470-251 chr7 54411583 54411769 + 3 NA Intergenic L1MA9|LINE|L1 80979 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 566-29 chr12 32552353 32552785 + 3 NA intron (NM_001304480, intron 1 of 16) AluSx1|SINE|Alu 18276 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 531-244 chr8 122789186 122789493 + 3 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 7684 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 811-46 chr8 83566408 83566752 + 3 NA Intergenic Intergenic 162822 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 329-470 chr5 112482869 112483058 + 3 NA Intergenic MIR|SINE|MIR 63380 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 632-66 chr20 60641877 60642249 + 3 NA Intergenic Intergenic 77501 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 562-212 chr8 15763422 15763700 + 3 NA intron (NM_006765, intron 10 of 10) intron (NM_006765, intron 10 of 10) 223298 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 207-174 chr22 25878536 25878646 + 3 NA intron (NM_001318245, intron 25 of 43) L1ME3D|LINE|L1 136403 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 383-276 chr4 43300175 43300347 + 3 NA Intergenic Intergenic 192282 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 280-71 chr11 31223624 31223767 + 3 NA intron (NM_001367979, intron 9 of 38) L1ME3Cz|LINE|L1 146044 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 359-471 chr8 74094539 74094744 + 3 NA Intergenic Intergenic 103249 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 286-376 chr5 173508864 173508980 + 3 NA Intergenic L1ME3A|LINE|L1 -70712 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 250-413 chr7 155526787 155526954 + 3 NA intron (NM_001369813, intron 2 of 4) L1M5|LINE|L1 6992 NR_163158 285888 Hs.146751 NM_001103176 ENSG00000146910 CNPY1 - canopy FGF signaling regulator 1 protein-coding 513-113 chr18 50768993 50769291 + 3 NA Intergenic L1MA4A|LINE|L1 50874 NM_031939 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 392-313 chr7 133131197 133131427 + 3 NA Intergenic Intergenic -22801 NR_133931 105375512 Hs.521205 NR_133931 LOC105375512 - uncharacterized LOC105375512 ncRNA 474-245 chr5 163045333 163045514 + 3 NA Intergenic L1MA4|LINE|L1 -392148 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 345-454 chr6 24363844 24364012 + 3 NA intron (NM_001195610, intron 1 of 10) L2b|LINE|L2 -5869 NM_016356 51473 Hs.61345 NM_016356 ENSG00000146038 DCDC2 DCDC2A|DFNB66|NPHP19|NSC|RU2|RU2S doublecortin domain containing 2 protein-coding 508-109 chr2 106689967 106690170 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 195960 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 964-4 chr10 79598475 79598986 + 3 NA Intergenic L1MA5|LINE|L1 -12209 NM_001164647 653509 Hs.535295 NM_005411 ENSG00000122852 SFTPA1 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 surfactant protein A1 protein-coding 383-32 chr10 58950544 58950827 + 3 NA Intergenic Intergenic -48833 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 631-110 chr6 40222951 40223258 + 3 NA Intergenic Intergenic 132902 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 460-97 chr16 55318107 55318346 + 3 NA Intergenic L2a|LINE|L2 -6333 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 352-288 chr20 55093264 55093454 + 3 NA Intergenic L1MD2|LINE|L1 -329684 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 328-335 chr22 30008705 30008855 + 3 NA TTS (NR_110541) TTS (NR_110541) 1731 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 757-60 chr7 138695151 138695503 + 3 NA Intergenic AluJb|SINE|Alu -16282 NM_001139456 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 331-470 chr6 136442418 136442574 + 3 NA intron (NM_001198617, intron 1 of 15) MER5B|DNA|hAT-Charlie 24379 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 987-17 chr8 16630757 16631187 + 3 NA Intergenic Intergenic 371373 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 397-213 chr3 183585290 183585545 + 3 NA Intergenic Intergenic -29711 NM_130446 89857 Hs.659147 NM_130446 ENSG00000172578 KLHL6 - kelch like family member 6 protein-coding 474-152 chr2 158432223 158432574 + 3 NA intron (NM_138803, intron 1 of 13) L1MEc|LINE|L1 24355 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 579-121 chr4 103685059 103685515 + 3 NA intron (NM_001059, intron 1 of 4) L1MD|LINE|L1 34698 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 599-135 chr8 88721530 88721793 + 3 NA Intergenic L1MA9|LINE|L1 -394178 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 885-14 chr21 27364606 27365133 + 3 NA Intergenic Intergenic -357510 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 1039-16 chr4 178533793 178534197 + 3 NA Intergenic Intergenic -626059 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 659-107 chr7 62778725 62779052 + 3 NA Intergenic ALR/Alpha|Satellite|centr 525168 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 482-111 chr18 69945121 69945421 + 3 NA intron (NM_001303619, intron 1 of 4) intron (NM_001303619, intron 1 of 4) 2602 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 480-13 chr1 106248913 106249098 + 3 NA Intergenic Intergenic -220752 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 743-10 chr10 36445116 36445591 + 3 NA Intergenic MER4A1|LTR|ERV1 667051 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 777-8 chr10 49704624 49705025 + 3 NA intron (NM_182554, intron 2 of 2) L1ME4b|LINE|L1 25173 NM_182554 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 522-43 chr11 35439998 35440354 + 3 NA intron (NM_015430, intron 8 of 11) intron (NM_015430, intron 8 of 11) -20118 NM_001195728 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 373-283 chr4 42186214 42186373 + 3 NA Intergenic Intergenic -33638 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 1098-2 chr13 51023465 51024039 + 3 NA intron (NR_003923, intron 9 of 16) intron (NR_003923, intron 9 of 16) 42405 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 454-215 chr3 144520580 144520773 + 3 NA Intergenic LTR78|LTR|ERV1 547595 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 432-9 chr1 97455077 97455278 + 3 NA intron (NM_000110, intron 13 of 22) L1ME3D|LINE|L1 -341744 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 493-295 chr8 66283442 66283692 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 91453 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 499-73 chr15 27178529 27178766 + 3 NA intron (NM_001270873, intron 3 of 5) MER39B|LTR|ERV1 -17328 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 422-140 chr2 22969481 22969718 + 3 NA Intergenic Intergenic -415580 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 406-305 chr8 136780607 136780826 + 3 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 249918 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 514-40 chr10 112233147 112233351 + 3 NA Intergenic Intergenic -49484 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 330-426 chr5 73461905 73462054 + 3 NA intron (NR_126410, intron 3 of 4) LTR9D|LTR|ERV1 10987 NR_126410 104355294 Hs.127927 NR_126410 ENSG00000251324 LINC01386 - long intergenic non-protein coding RNA 1386 ncRNA 671-39 chr2 21187226 21187530 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 63392 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 577-206 chr9 106057059 106057358 + 3 NA Intergenic Intergenic 362667 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 620-149 chr8 131358195 131358492 + 3 NA Intergenic L1PA15|LINE|L1 -317434 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 585-85 chr2 223211216 223211548 + 3 NA Intergenic L1MA4A|LINE|L1 159452 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 591-14 chr10 89492160 89492408 + 3 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 36293 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 544-196 chr6 64682085 64682412 + 3 NA intron (NM_001292009, intron 22 of 43) AluYm1|SINE|Alu -619170 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 786-27 chr18 45475342 45475646 + 3 NA intron (NR_110899, intron 6 of 7) L1PA7|LINE|L1 31542 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 509-201 chr5 99435487 99435670 + 3 NA Intergenic Intergenic -98412 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 815 chr1 64566095 64566410 + 3 NA intron (NM_020925, intron 2 of 26) L2a|LINE|L2 -13595 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 524-186 chr4 186453210 186453442 + 3 NA intron (NR_033901, intron 1 of 6) LTR8B|LTR|ERV1 47732 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 559-44 chr13 71417044 71417250 + 3 NA Intergenic L1PB4|LINE|L1 402006 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 268-210 chr2 137078484 137078652 + 3 NA intron (NM_001316349, intron 3 of 27) L1MC4|LINE|L1 313023 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 505-65 chr12 112960569 112960854 + 3 NA intron (NM_006187, intron 7 of 15) MIR|SINE|MIR -17808 NM_002535 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 468-123 chr18 13349306 13349533 + 3 NA intron (NM_181482, intron 2 of 5) L1MB2|LINE|L1 71314 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 427-11 chr1 163635248 163635450 + 3 NA Intergenic L1MCa|LINE|L1 -212158 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 612-58 chr2 22410478 22410876 + 3 NA Intergenic L2a|LINE|L2 -125802 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 462-221 chr5 8553948 8554236 + 3 NA Intergenic Intergenic 93167 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 225-24 chr10 4729769 4729907 + 3 NA Intergenic Intergenic -51768 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 913-34 chr6 65149866 65150469 + 3 NA intron (NM_001292009, intron 12 of 43) THE1C|LTR|ERVL-MaLR -151251 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 439-35 chr10 64875785 64875975 + 3 NA Intergenic Intergenic 48638 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 406-111 chr17 61626815 61626988 + 3 NA Intergenic L1M4|LINE|L1 -35682 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 449-100 chr17 71270697 71270891 + 3 NA Intergenic MER53|DNA|hAT -68615 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 676-17 chr10 50498332 50498888 + 3 NA intron (NM_147156, intron 3 of 10) L1MB3|LINE|L1 125346 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 516-99 chr16 84859818 84860061 + 3 NA intron (NM_031476, intron 6 of 14) HERVL-int|LTR|ERVL 39954 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 533-113 chr2 197055079 197055382 + 3 NA intron (NM_001367496, intron 16 of 27) L1M5|LINE|L1 -128523 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 394-165 chr2 55680869 55681150 + 3 NA intron (NM_033109, intron 5 of 27) MIR|SINE|MIR 12835 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 377-379 chr7 91724600 91724846 + 3 NA Intergenic L1MA4|LINE|L1 155979 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 237-17 chr1 118636753 118636901 + 3 NA Intergenic L2|LINE|L2 351516 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 556-178 chr5 105701367 105701589 + 3 NA Intergenic L1MA7|LINE|L1 602004 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 590-163 chr8 9505233 9505645 + 3 NA Intergenic Intergenic -50473 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 619-119 chr7 34568698 34569039 + 3 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -89350 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 1015-19 chr8 83313758 83314259 + 3 NA Intergenic MER83|LTR|ERV1 -89750 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 645-50 chr19 37672507 37672831 + 3 NA intron (NM_152605, intron 3 of 3) L1M5|LINE|L1 -16408 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 463-198 chr3 156768894 156769256 + 3 NA intron (NR_038387, intron 1 of 2) L1ME3G|LINE|L1 42946 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 596-38 chr11 79518894 79519207 + 3 NA Intergenic Intergenic -78020 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 482-274 chr8 110563495 110563656 + 3 NA Intergenic Intergenic 463858 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 437-280 chr8 125275915 125276171 + 3 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -154315 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 463-133 chr2 30370944 30371213 + 3 NA Intergenic Intergenic 24432 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 332-551 chr8 128355475 128355606 + 3 NA Intergenic Intergenic 205424 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 1216 chr1 63291123 63291663 + 3 NA intron (NR_038252, intron 3 of 11) intron (NR_038252, intron 3 of 11) 25864 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 617-113 chr5 146545533 146545842 + 3 NA Intergenic Intergenic -29574 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 500-255 chr6 117459893 117460250 + 3 NA Intergenic L1MD1|LINE|L1 -22533 NM_173674 285761 Hs.658304 NM_173674 ENSG00000164465 DCBLD1 dJ94G16.1 discoidin, CUB and LCCL domain containing 1 protein-coding 785-53 chr6 129042727 129043180 + 3 NA intron (NM_000426, intron 1 of 64) L1ME2z|LINE|L1 159812 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 566-93 chr2 111627174 111627525 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -132188 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 536-130 chr2 147763202 147763432 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -81200 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 621-107 chr6 22369433 22369719 + 3 NA Intergenic L2c|LINE|L2 -66741 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 562-27 chr10 118761341 118761629 + 3 NA Intergenic Intergenic -6515 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 385-57 chr11 104058223 104058387 + 3 NA intron (NM_025208, intron 1 of 6) L1ME1|LINE|L1 21665 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 488-3 chr1 35790995 35791316 + 3 NA Intergenic Intergenic -16481 NR_146062 192670 Hs.744858 NM_017629 ENSG00000134698 AGO4 EIF2C4 argonaute RISC component 4 protein-coding 409-107 chr17 5651877 5652125 + 3 NA Intergenic MIRc|SINE|MIR -67492 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 580-185 chr7 64713012 64713209 + 3 NA Intergenic Intergenic 34046 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 341-155 chr14 86549213 86549374 + 3 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -356485 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 535-133 chr2 125428519 125428774 + 3 NA Intergenic Intergenic 689339 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 658-67 chr2 128938794 128939092 + 3 NA Intergenic Intergenic 74343 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 519-167 chr4 166612265 166612625 + 3 NA Intergenic Intergenic 621981 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 220-108 chr14 48450935 48451036 + 3 NA Intergenic Intergenic -655971 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 467-168 chr3 1545600 1545781 + 3 NA Intergenic MER6A|DNA|TcMar-Tigger 452666 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 355-487 chr8 28174772 28175033 + 3 NA intron (NM_018091, intron 14 of 14) L1MB4|LINE|L1 81763 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 304-129 chr13 88166430 88166612 + 3 NA intron (NR_131919, intron 1 of 4) intron (NR_131919, intron 1 of 4) 23654 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 433-270 chr8 26723919 26724127 + 3 NA Intergenic L1ME3G|LINE|L1 141632 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 522-198 chr5 5387879 5388193 + 3 NA Intergenic L1M5|LINE|L1 -34641 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 394-337 chr8 136270185 136270403 + 3 NA Intergenic Intergenic -260504 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 454-211 chr3 122108217 122108519 + 3 NA intron (NM_176892, intron 4 of 5) intron (NM_176892, intron 4 of 5) 30519 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 203-89 chr18 3098195 3098313 + 3 NA intron (NM_019856, intron 24 of 36) intron (NM_019856, intron 24 of 36) -86307 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 778-46 chr3 26934023 26934418 + 3 NA Intergenic MamRep605|LTR?|LTR? 239663 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 307-277 chr20 56235982 56236185 + 3 NA Intergenic Intergenic -12649 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 467-120 chr19 6904737 6905021 + 3 NA intron (NM_001974, intron 8 of 20) L2b|LINE|L2 17300 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 551-85 chr2 35843326 35843540 + 3 NA Intergenic MER112|DNA|hAT-Charlie 372028 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 403-17 chr1 181443441 181443662 + 3 NA Intergenic Intergenic -39966 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 338-502 chr7 49942160 49942339 + 3 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 150997 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 1071-14 chr4 115601283 115602010 + 3 NA Intergenic MER5C1|DNA|hAT-Charlie -488026 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 256-75 chr12 992685 992819 + 3 NA intron (NR_027948, intron 1 of 19) intron (NR_027948, intron 1 of 19) 1529 NR_027948 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 642-42 chr18 1442143 1442453 + 3 NA Intergenic L1M7|LINE|L1 -82669 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 496-31 chr10 39152084 39152366 + 3 NA Intergenic ALR/Alpha|Satellite|centr 455629 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 504-122 chr2 55037226 55037459 + 3 NA intron (NM_001321904, intron 2 of 9) LTR40b|LTR|ERVL 9984 NM_001321863 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 472-291 chr7 12678397 12678709 + 3 NA Intergenic Intergenic -8274 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 309-547 chr8 85117455 85117667 + 3 NA intron (NM_033402, intron 6 of 18) intron (NM_033402, intron 6 of 18) 10323 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 750-21 chr15 93531847 93532129 + 3 NA Intergenic L1M4|LINE|L1 -324572 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 370-208 chr19 58117758 58117929 + 3 NA intron (NR_027135, intron 1 of 1) intron (NR_027135, intron 1 of 1) 583 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 301-161 chr17 54910438 54910563 + 3 NA intron (NM_001321176, intron 4 of 16) intron (NM_001321176, intron 4 of 16) 9648 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 472-10 chr1 76649087 76649386 + 3 NA Intergenic L2c|LINE|L2 130031 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 450-332 chrX 95966078 95966359 + 3 NA Intergenic L2a|LINE|L2 371684 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 787-27 chr3 42238055 42238448 + 3 NA Intergenic L1MA3|LINE|L1 25696 NM_001174138 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 522-279 chrX 155407225 155407530 + 3 NA Intergenic L1P4|LINE|L1 -24179 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 295-37 chr10 4616513 4616696 + 3 NA Intergenic MER21B|LTR|ERVL -39552 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 447-28 chr10 58251682 58251870 + 3 NA intron (NM_152230, intron 1 of 5) L1MA4|LINE|L1 16118 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 295-450 chr7 110117887 110118052 + 3 NA Intergenic Intergenic -157756 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 510-203 chr4 60612696 60613032 + 3 NA Intergenic Intergenic -309755 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 282-53 chr10 78155596 78155785 + 3 NA Intergenic L1MB5|LINE|L1 -92935 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 429-314 chr8 133876144 133876328 + 3 NA Intergenic L1MB2|LINE|L1 -10260 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 362-272 chr3 82395919 82396135 + 3 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 409885 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 741-6 chr10 18577698 18578037 + 3 NA intron (NM_182543, intron 8 of 10) LTR10F|LTR|ERV1 73720 NM_001351115 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 586-124 chr5 101636512 101636775 + 3 NA Intergenic Intergenic 659641 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 381-24 chr1 216990252 216990433 + 3 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) -50669 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 540-9 chr1 73751675 73752013 + 3 NA Intergenic Intergenic 77165 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 1014-17 chr22 34828458 34828994 + 3 NA intron (NR_138042, intron 3 of 4) MLT2B4|LTR|ERVL 169190 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 314-4 chr1 30592696 30592923 + 3 NA Intergenic L1MB3|LINE|L1 -125963 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 382-155 chr18 57181985 57182163 + 3 NA Intergenic L1MA7|LINE|L1 -10880 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 681 chr10 12289107 12289586 + 3 NA Intergenic Intergenic -60201 NM_020397 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 483-298 chrX 89202383 89202599 + 3 NA Intergenic Intergenic 455266 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 514-225 chr5 67823904 67824080 + 3 NA Intergenic MSTB1-int|LTR|ERVL-MaLR 30779 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 353-168 chr15 97993737 97993936 + 3 NA Intergenic MIR|SINE|MIR -9202 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 286-130 chr14 86604331 86604489 + 3 NA Intergenic Intergenic -301368 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 573-4 chr1 93010606 93010895 + 3 NA Intergenic L1MB7|LINE|L1 -49228 NM_001252269 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 915-31 chr9 105627422 105627908 + 3 NA intron (NR_147213, intron 9 of 9) intron (NR_147213, intron 9 of 9) -34792 NM_005421 6887 Hs.247978 NM_005421 ENSG00000186051 TAL2 - TAL bHLH transcription factor 2 protein-coding 581-34 chr12 113670840 113671096 + 3 NA Intergenic MIR|SINE|MIR 102715 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 427-290 chrX 155035021 155035227 + 3 NA intron (NM_023934, intron 2 of 4) L1ME3B|LINE|L1 8280 NM_023934 65991 Hs.356050 NM_023934 ENSG00000165775 FUNDC2 DC44|HCBP6|HCC3|PD03104 FUN14 domain containing 2 protein-coding 781-61 chr8 10005855 10006251 + 3 NA Intergenic L1M5|LINE|L1 -48239 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 663-83 chr5 8804474 8804849 + 3 NA Intergenic L1PB1|LINE|L1 -35071 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 879-9 chr16 7563128 7563593 + 3 NA intron (NM_145893, intron 2 of 13) MIR|SINE|MIR 230515 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 184-72 chr17 53900585 53900698 + 3 NA Intergenic (TTTTAAT)n|Simple_repeat|Simple_repeat 77714 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 906-22 chr20 15366278 15366764 + 3 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 169681 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 389-46 chr10 108532694 108532851 + 3 NA Intergenic L1P1|LINE|L1 -463479 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 582-148 chr8 46779056 46779301 + 3 NA Intergenic BSR/Beta|Satellite|Satellite -61708 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 621-98 chr5 92598456 92598772 + 3 NA Intergenic L1M5|LINE|L1 972729 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 798-71 chr9 138081984 138082420 + 3 NA intron (NM_001243812, intron 35 of 45) L1M4|LINE|L1 -37131 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 374-308 chr5 46009861 46010057 + 3 NA Intergenic ALR/Alpha|Satellite|centr -313579 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 410-334 chr9 96810611 96810950 + 3 NA Intergenic AluJo|SINE|Alu -32651 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 722-26 chr14 27536987 27537352 + 3 NA intron (NR_148991, intron 2 of 2) L1ME3B|LINE|L1 -75419 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 660-76 chr5 3632567 3632948 + 3 NA Intergenic Intergenic 36925 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 731-11 chr10 16132539 16133020 + 3 NA Intergenic L1ME3|LINE|L1 -272246 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 887-6 chr11 71315037 71315422 + 3 NA Intergenic L1MCa|LINE|L1 -90433 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 693-88 chr6 40208613 40209006 + 3 NA Intergenic L1MC5|LINE|L1 147197 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 546-149 chr3 94150338 94150622 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 87419 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 446-291 chr7 134625154 134625364 + 3 NA Intergenic L1ME2|LINE|L1 -21520 NM_001293085 669 Hs.198365 NM_001724 ENSG00000172331 BPGM DPGM|ECYT8 bisphosphoglycerate mutase protein-coding 391-98 chr14 46634436 46634643 + 3 NA Intergenic L1PA13|LINE|L1 17242 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 443-120 chr17 49463938 49464207 + 3 NA Intergenic Intergenic -2323 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LINC02075 - long intergenic non-protein coding RNA 2075 ncRNA 409-209 chr3 175509376 175509599 + 3 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 139947 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 772-64 chrX 84732929 84733384 + 3 NA Intergenic L1M4b|LINE|L1 -200995 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 403-338 chrX 90018413 90018709 + 3 NA Intergenic L1MA6|LINE|L1 96653 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 963-12 chr15 38151219 38151727 + 3 NA Intergenic Intergenic -78483 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 482-295 chr9 78198222 78198543 + 3 NA Intergenic L1MEd|LINE|L1 -37693 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 777-26 chr15 58505068 58505400 + 3 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -6499 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 779-55 chr8 98943363 98943711 + 3 NA promoter-TSS (NM_001256312) promoter-TSS (NM_001256312) -866 NM_053001 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 415-66 chr14 20552677 20552879 + 3 NA Intergenic Intergenic 8153 NM_001110359 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 730-42 chr21 30660223 30660678 + 3 NA Intergenic L1MB7|LINE|L1 17586 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 471-253 chr7 54341292 54341563 + 3 NA intron (NR_120516, intron 1 of 2) L2|LINE|L2 10730 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 521-51 chr11 81141143 81141368 + 3 NA Intergenic Intergenic -378452 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 748-80 chr7 37693465 37693856 + 3 NA intron (NM_001329994, intron 3 of 3) L1M2a|LINE|L1 9894 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 505-193 chr3 54884522 54884824 + 3 NA intron (NM_018398, intron 21 of 37) intron (NM_018398, intron 21 of 37) 16582 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 291-145 chr15 27492881 27493016 + 3 NA intron (NM_033223, intron 6 of 9) intron (NM_033223, intron 6 of 9) -331629 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 572-71 chr17 73682174 73682408 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -37846 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 484-79 chr15 95693078 95693360 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 260126 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 774-60 chr3 99027106 99027520 + 3 NA Intergenic L1M3f|LINE|L1 -125618 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 393-300 chr6 40572295 40572458 + 3 NA intron (NM_020737, intron 1 of 2) MIR1_Amn|SINE|MIR 14988 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 512-3 chr1 29485539 29485838 + 3 NA Intergenic Intergenic -135574 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 477-244 chr6 91359478 91359757 + 3 NA Intergenic Intergenic -162043 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 575-209 chr9 26123547 26123890 + 3 NA Intergenic Intergenic 57043 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 259-151 chr16 27117395 27117592 + 3 NA Intergenic L3|LINE|CR1 50566 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 370-11 chr1 89174067 89174219 + 3 NA intron (NM_207398, intron 1 of 10) L1MC4a|LINE|L1 1860 NM_207398 388646 Hs.591450 NM_207398 ENSG00000213512 GBP7 GBP4L guanylate binding protein 7 protein-coding 672-83 chr4 144301576 144302081 + 3 NA Intergenic Intergenic -161110 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 643-6 chr1 191149300 191149591 + 3 NA Intergenic Intergenic 79053 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 597-47 chr14 58733350 58733692 + 3 NA Intergenic Charlie13a|DNA|hAT-Charlie 94684 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 775-39 chr18 11428636 11429176 + 3 NA Intergenic Intergenic -25572 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 566-159 chr5 129068006 129068312 + 3 NA Intergenic Intergenic -26590 NM_016048 51015 Hs.483296 NM_016048 ENSG00000066583 ISOC1 CGI-111 isochorismatase domain containing 1 protein-coding 729-35 chr2 21457864 21458370 + 3 NA Intergenic L1ME2|LINE|L1 252535 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 292-391 chr7 1136538 1136651 + 3 NA intron (NM_001134396, intron 1 of 4) L1MEc|LINE|L1 1653 NM_001318252 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 549-31 chr10 91778744 91779008 + 3 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 19320 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 279-293 chr4 59448493 59448675 + 3 NA Intergenic Intergenic 435011 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 480-311 chr9 27789010 27789191 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -215234 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 174-142 chr8 77248246 77248351 + 3 NA Intergenic LTR49|LTR|ERV1 -202399 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 583-112 chr3 109445495 109445866 + 3 NA intron (NR_109841, intron 2 of 4) L1M1|LINE|L1 35690 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 482-28 chr1 232333661 232333960 + 3 NA Intergenic Intergenic 181798 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 324-13 chr1 79224540 79224715 + 3 NA Intergenic LTR67B|LTR|ERVL -217897 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 181-50 chr16 60510150 60510245 + 3 NA Intergenic Intergenic -150404 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 510-99 chr16 62462225 62462575 + 3 NA Intergenic L1PA15-16|LINE|L1 -425962 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 607-38 chr14 41079801 41080318 + 3 NA intron (NR_109758, intron 3 of 3) HAL1b|LINE|L1 125348 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 733-76 chr8 46512486 46512838 + 3 NA Intergenic ALR/Alpha|Satellite|centr 104981 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 388-272 chr5 33129741 33129954 + 3 NA Intergenic Intergenic -99888 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 577-50 chr12 67833986 67834191 + 3 NA Intergenic Intergenic -95147 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 401-350 chr9 111520907 111521073 + 3 NA Intergenic L2|LINE|L2 -4189 NM_133464 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 463-248 chr6 40204037 40204282 + 3 NA Intergenic L1MA9|LINE|L1 151847 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 557-92 chr2 51167457 51167719 + 3 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 134987 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 548-217 chr7 103644074 103644311 + 3 NA intron (NM_005045, intron 16 of 64) L1PB4|LINE|L1 -197985 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 725-54 chr7 25453759 25454038 + 3 NA Intergenic LTR78|LTR|ERV1 209242 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 836-59 chr8 27072054 27072508 + 3 NA Intergenic Intergenic -23318 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 295-33 chr1 231825443 231825609 + 3 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -7009 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 270-374 chr8 11297048 11297250 + 3 NA intron (NM_015458, intron 2 of 9).2 intron (NM_015458, intron 2 of 9).2 12333 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 204-129 chr19 6648260 6648360 + 3 NA Intergenic MER58B|DNA|hAT-Charlie 21848 NM_172014 8740 Hs.129708 NM_003807 ENSG00000125735 TNFSF14 CD258|HVEML|LIGHT|LTg TNF superfamily member 14 protein-coding 431-57 chr11 80226707 80226924 + 3 NA Intergenic MER3|DNA|hAT-Charlie 535988 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 431-292 chr8 87501433 87501598 + 3 NA Intergenic Intergenic 372500 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 494-96 chr17 71294251 71294480 + 3 NA Intergenic Intergenic -92186 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 946-11 chr2 39362620 39363137 + 3 NA intron (NM_003618, intron 2 of 33) L1MB1|LINE|L1 74407 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 573-124 chr4 35500359 35500650 + 3 NA Intergenic Intergenic 743435 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 455-102 chr17 77667850 77668131 + 3 NA Intergenic L1M5|LINE|L1 60569 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 805-49 chr8 136901732 136902290 + 3 NA Intergenic Intergenic 371213 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 395-42 chr10 76048190 76048371 + 3 NA intron (NM_001305581, intron 4 of 6) intron (NM_001305581, intron 4 of 6) 265519 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 514-136 chr2 5157120 5157426 + 3 NA Intergenic L1ME2|LINE|L1 -501051 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 473-91 chr14 86875738 86875933 + 3 NA Intergenic Intergenic -29943 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 1086-2 chr1 49796920 49797748 + 3 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 226620 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 345-529 chr8 111137147 111137364 + 3 NA intron (NR_125418, intron 1 of 3) L1MA3|LINE|L1 98948 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 617-31 chr13 94419114 94419394 + 3 NA Intergenic MER45B|DNA|hAT-Tip100 60428 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 312-234 chr2 62050398 62050556 + 3 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) 144835 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 467-83 chr14 62441196 62441441 + 3 NA Intergenic Intergenic -301345 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 376-409 chr8 114826623 114826864 + 3 NA Intergenic Intergenic 841270 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 557-105 chr2 118919924 118920198 + 3 NA Intergenic L1ME1|LINE|L1 -22108 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 447-33 chr10 88086523 88086788 + 3 NA Intergenic Intergenic 223030 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 539-83 chr16 6699055 6699279 + 3 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -74642 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 851-19 chr2 51636594 51637215 + 3 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 604303 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 446-150 chr2 79406612 79406834 + 3 NA Intergenic Intergenic 94121 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 468-92 chr15 76563679 76563969 + 3 NA intron (NR_148227, intron 23 of 32) L1PREC2|LINE|L1 -22823 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 480-232 chr5 40998354 40998647 + 3 NA intron (NM_173489, intron 41 of 41) intron (NM_173489, intron 41 of 41) 72842 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 573-109 chr21 28683213 28683571 + 3 NA Intergenic Ricksha_0|DNA|MULE-MuDR 144074 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 532-46 chr12 50836112 50836430 + 3 NA Intergenic L1PB1|LINE|L1 -6655 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 350-275 chr20 42884704 42884886 + 3 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -83948 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 532-84 chr16 9609641 9609906 + 3 NA Intergenic Intergenic -154268 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 459-294 chr8 60941759 60941955 + 3 NA Intergenic MIR|SINE|MIR 25891 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 527-43 chr11 32283168 32283520 + 3 NA Intergenic L1PA15|LINE|L1 117056 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 876-39 chrX 62726371 62726872 + 3 NA Intergenic ALR/Alpha|Satellite|centr 624711 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 742-6 chr1 169257957 169258333 + 3 NA intron (NR_104229, intron 7 of 12) AluJr|SINE|Alu 109652 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 473-177 chr3 104976466 104976743 + 3 NA Intergenic Intergenic -390109 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 402-59 chr12 14123825 14124006 + 3 NA Intergenic Intergenic -143559 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 281-273 chr21 33221719 33221857 + 3 NA Intergenic L1MCb|LINE|L1 -8107 NM_001289125 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 470-284 chr9 28454429 28454662 + 3 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 264760 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 651-105 chr7 8700463 8700794 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 267019 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 976-27 chr9 96763262 96763830 + 3 NA exon (NM_014930, exon 4 of 6) exon (NM_014930, exon 4 of 6) 14541 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 1227-2 chr12 37797002 37797762 + 3 NA Intergenic ALR/Alpha|Satellite|centr -519392 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 590-135 chr5 97640192 97640476 + 3 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 135638 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 413-268 chr6 67570488 67570658 + 3 NA Intergenic L1ME2|LINE|L1 -484778 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 541-238 chr8 107680795 107681067 + 3 NA Intergenic Intergenic -183013 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 658-27 chr11 29107183 29107548 + 3 NA Intergenic Intergenic -487048 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 572-78 chr19 21809219 21809587 + 3 NA exon (NM_001256648, exon 7 of 7) exon (NM_001256648, exon 7 of 7) 26779 NM_003423 7594 Hs.534365 NM_003423 ENSG00000198521 ZNF43 HTF6|KOX27|ZNF39L1 zinc finger protein 43 protein-coding 677-10 chr10 39304024 39304544 + 3 NA Intergenic ALR/Alpha|Satellite|centr 607688 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 533-154 chr4 58074866 58075130 + 3 NA Intergenic Intergenic 461330 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 499-209 chr5 124759807 124760053 + 3 NA Intergenic AluJr|SINE|Alu -14818 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 446-10 chr1 70836557 70836808 + 3 NA Intergenic Intergenic 130229 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 497-219 chr5 22015929 22016169 + 3 NA intron (NM_004061, intron 5 of 14) intron (NM_004061, intron 5 of 14) -126202 NM_001364109 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 514-26 chr10 43237075 43237327 + 3 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) -7462 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 642-29 chr12 113550071 113550468 + 3 NA Intergenic AluSx|SINE|Alu 78266 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 503-313 chrX 67090511 67090725 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -451320 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 378-415 chr7 99487385 99487550 + 3 NA exon (NM_213603, exon 5 of 5) exon (NM_213603, exon 5 of 5) 12814 NM_032164 84124 Hs.386324 NM_032164 ENSG00000160908 ZNF394 ZKSCAN14|ZSCAN46 zinc finger protein 394 protein-coding 485-122 chr2 14259460 14259843 + 3 NA intron (NR_103814, intron 2 of 3) L1P4|LINE|L1 141307 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 410-28 chr10 21743687 21743995 + 3 NA TTS (NR_136736) TTS (NR_136736) 209669 NM_001195630 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 578-15 chr1 221332675 221333002 + 3 NA non-coding (NR_024236, exon 2 of 2) non-coding (NR_024236, exon 2 of 2) 3458 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 373-127 chr15 34817085 34817332 + 3 NA Intergenic L1MEg|LINE|L1 -21659 NM_005159 70 Hs.118127 NM_005159 ENSG00000159251 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin alpha cardiac muscle 1 protein-coding 364-92 chr11 80482818 80483004 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 279892 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 641-80 chr4 30369003 30369357 + 3 NA Intergenic Intergenic -351189 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 267-77 chr12 14748638 14748787 + 3 NA Intergenic Intergenic 22419 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 479-269 chr9 1088724 1089067 + 3 NA Intergenic L1M5|LINE|L1 37408 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 476-104 chr16 61474140 61474393 + 3 NA Intergenic L1MA1|LINE|L1 -418500 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 539-84 chr16 27888952 27889189 + 3 NA promoter-TSS (NM_144675) promoter-TSS (NM_144675) -913 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 394-103 chr14 53915227 53915363 + 3 NA Intergenic MIR|SINE|MIR 33189 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 546-71 chr14 57923427 57923811 + 3 NA Intergenic Intergenic -57527 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 855-34 chr3 33348937 33349442 + 3 NA intron (NR_146129, intron 4 of 15) L1MA2|LINE|L1 71747 NR_146133 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 572-175 chr8 119283605 119283876 + 3 NA Intergenic L2c|LINE|L2 -36883 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 651-122 chr8 125971302 125971718 + 3 NA Intergenic Intergenic -20313 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 511-32 chr10 120012437 120012716 + 3 NA Intergenic Intergenic 54063 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 552-155 chr4 71170327 71170596 + 3 NA Intergenic Intergenic -16798 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 476-270 chr8 115037681 115038063 + 3 NA Intergenic LTR12C|LTR|ERV1 630141 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 414-95 chr15 25819348 25819511 + 3 NA intron (NM_024490, intron 1 of 20) L1PB4|LINE|L1 29396 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 382-111 chr14 59153320 59153585 + 3 NA Intergenic Intergenic -35215 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 464-99 chr18 41796793 41797106 + 3 NA Intergenic X7B_LINE|LINE|CR1 -158285 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 307-78 chr11 21419484 21419704 + 3 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 750008 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 417-185 chr3 167558725 167558955 + 3 NA intron (NM_001348951, intron 9 of 18) intron (NM_001348951, intron 9 of 18) -84708 NM_001012303 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 439-43 chr11 2765856 2766045 + 3 NA intron (NM_181798, intron 11 of 15) L1MEg|LINE|L1 -65952 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 355-52 chr10 54493048 54493236 + 3 NA intron (NR_134503, intron 1 of 5) THE1B|LTR|ERVL-MaLR 6912 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 596-135 chr5 144631217 144631423 + 3 NA Intergenic L1MA1|LINE|L1 425929 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 443-91 chr14 51878265 51878433 + 3 NA intron (NM_001243773, intron 2 of 3) L1MC5|LINE|L1 17737 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 947-5 chr13 47549194 47549552 + 3 NA Intergenic Kanga1b|DNA|TcMar-Tc2 383249 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 413-160 chr2 210489279 210489598 + 3 NA intron (NM_001122633, intron 1 of 38) intron (NM_001122633, intron 1 of 38) 11753 NM_001122633 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 488-141 chr2 103903476 103903768 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 504710 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 364-170 chr17 60892945 60893107 + 3 NA intron (NM_001330413, intron 10 of 25) L1PB4|LINE|L1 215175 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 641-6 chr1 214740379 214740735 + 3 NA Intergenic L1ME4a|LINE|L1 137362 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 333-249 chr2 84145793 84145947 + 3 NA Intergenic Intergenic -144812 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 536-39 chr10 128390710 128391060 + 3 NA Intergenic L1ME3|LINE|L1 104935 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 790-59 chr9 6606389 6606773 + 3 NA intron (NM_000170, intron 5 of 24) intron (NM_000170, intron 5 of 24) 39111 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 669-15 chr11 24374644 24375092 + 3 NA Intergenic Intergenic -122185 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 520-141 chr2 51301030 51301215 + 3 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 268521 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 436-198 chr3 191247317 191247509 + 3 NA intron (NM_198184, intron 3 of 4) intron (NM_198184, intron 3 of 4) -12808 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 473-136 chr2 84011770 84012051 + 3 NA Intergenic L1MC1|LINE|L1 -278772 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 468-204 chr3 93741933 93742176 + 3 NA Intergenic ALR/Alpha|Satellite|centr 232027 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 407-187 chr3 10901698 10901910 + 3 NA intron (NM_014229, intron 6 of 13) intron (NM_014229, intron 6 of 13) 85576 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 751-42 chr21 17311805 17312269 + 3 NA Intergenic L1PA7|LINE|L1 -126853 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 349-213 chr18 8012315 8012501 + 3 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 354626 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 498-238 chr6 129450651 129450822 + 3 NA intron (NM_000426, intron 45 of 64) intron (NM_000426, intron 45 of 64) 259441 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 560-159 chr6 163870819 163871093 + 3 NA Intergenic AluJr|SINE|Alu -199472 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 432-164 chr21 31439153 31439380 + 3 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -94912 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 259-121 chr14 61031468 61031564 + 3 NA intron (NR_033344, intron 6 of 16) intron (NR_033344, intron 6 of 16) -49826 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 264-65 chr10 115060051 115060196 + 3 NA Intergenic Intergenic -33242 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 362-195 chr18 2412479 2412633 + 3 NA Intergenic Intergenic 158949 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 550-173 chr4 161433225 161433472 + 3 NA intron (NM_001128428, intron 14 of 14) L1MA3|LINE|L1 -589385 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 404-290 chr7 37080974 37081154 + 3 NA intron (NM_001206480, intron 15 of 21) L2a|LINE|L2 83268 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 410-188 chr3 45784348 45784591 + 3 NA intron (NM_022405, intron 1 of 9) L1MD|LINE|L1 12067 NM_020208 54716 Hs.413095 NM_020208 ENSG00000163817 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 member 20 protein-coding 450-114 chr17 71549745 71549982 + 3 NA Intergenic Intergenic -347684 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 675-47 chr2 211134326 211134662 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 516923 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 484-80 chr15 100458749 100459047 + 3 NA intron (NM_001290341, intron 12 of 13) L1ME4b|LINE|L1 85388 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 486-249 chr5 146865370 146865658 + 3 NA intron (NM_181678, intron 2 of 10) L2a|LINE|L2 13271 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 389-389 chr9 136036543 136036781 + 3 NA intron (NM_144653, intron 2 of 5) intron (NM_144653, intron 2 of 5) 58627 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 515-123 chr2 107594864 107595069 + 3 NA Intergenic Intergenic 65547 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 582-99 chr3 88351847 88352195 + 3 NA intron (NM_001368167, intron 2 of 2) Kanga2_a|DNA|TcMar-Tc2 13565 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 508-259 chr9 85215639 85216017 + 3 NA Intergenic Intergenic 509927 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 539-80 chr15 80475694 80475996 + 3 NA intron (NM_014862, intron 5 of 18) intron (NM_014862, intron 5 of 18) 71463 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 490-9 chr1 70705550 70705811 + 3 NA promoter-TSS (NR_125938) promoter-TSS (NR_125938) -773 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 422-174 chr22 32693826 32694048 + 3 NA intron (NM_003490, intron 6 of 13) L1M7|LINE|L1 -106879 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 638-68 chr2 100117995 100118399 + 3 NA intron (NM_002285, intron 1 of 23) intron (NM_002285, intron 1 of 23) -12614 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 568-57 chr14 98756521 98756803 + 3 NA Intergenic Intergenic 45049 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 625-106 chr7 116264650 116264947 + 3 NA Intergenic Intergenic 21866 NR_130923 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 214-150 chr2 11892489 11892603 + 3 NA Intergenic Intergenic -55560 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 374-345 chr6 126217563 126217830 + 3 NA Intergenic L1MA3|LINE|L1 -122093 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 598-136 chr8 46933488 46933891 + 3 NA Intergenic Intergenic 92803 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 427-82 chr15 79847783 79847940 + 3 NA intron (NR_037654, intron 2 of 2) L1MB1|LINE|L1 49136 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 480-200 chr3 163674134 163674319 + 3 NA Intergenic Intergenic -370925 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 319-328 chr3 44403481 44403669 + 3 NA intron (NM_001282915, intron 10 of 10) intron (NM_001282915, intron 10 of 10) 19362 NM_001351479 102724231 Hs.131918 NM_001351479 C3orf86 LINC00694 chromosome 3 open reading frame 86 protein-coding 300-53 chr10 94033533 94033654 + 3 NA intron (NM_001288989, intron 2 of 32) Charlie4a|DNA|hAT-Charlie 39662 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 645-45 chr17 69822879 69823222 + 3 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -138657 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 565-55 chr16 52015943 52016223 + 3 NA Intergenic Intergenic 57852 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 509-24 chr10 51748424 51748644 + 3 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -48939 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 640-50 chr16 83309503 83310035 + 3 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -198577 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 259-434 chr9 94721743 94721905 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -4845 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 636-148 chr8 114015721 114015956 + 3 NA Intergenic Intergenic -578899 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 553-117 chr2 80656184 80656534 + 3 NA Intergenic L1MB4|LINE|L1 342980 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 226-14 chr1 92759882 92759999 + 3 NA intron (NM_001308248, intron 1 of 18) L1MB4|LINE|L1 25168 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 369-114 chr14 54503832 54504008 + 3 NA Intergenic Intergenic -5986 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 403-200 chr3 113187503 113187676 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -19858 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 665-52 chr2 193200350 193200682 + 3 NA Intergenic Tigger14a|DNA|TcMar-Tigger 450671 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 506-131 chr2 40718150 40718474 + 3 NA Intergenic Intergenic -205877 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 744-76 chr8 138866139 138866621 + 3 NA intron (NM_152888, intron 3 of 64) intron (NM_152888, intron 3 of 64) 47661 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 284-338 chr5 166241213 166241345 + 3 NA Intergenic Intergenic 685091 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 552-117 chr2 241580457 241580715 + 3 NA Intergenic L1MC5a|LINE|L1 -21443 NR_033346 100379249 Hs.621128 NR_033346 BOK-AS1 BOK-AS|BOKAS|NAToB|NCRNA00151 BOK antisense RNA 1 ncRNA 546-221 chr7 52577168 52577394 + 3 NA Intergenic Intergenic -458352 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 570-163 chr5 111706018 111706258 + 3 NA intron (NR_040093, intron 2 of 6) MamRep1151|LTR?|LTR? 50113 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 501-90 chr19 9721582 9721759 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 -20894 NR_146446 729648 Hs.626848 NM_001199814 ZNF812P ZNF812 zinc finger protein 812, pseudogene pseudo 303-12 chr1 112078966 112079142 + 3 NA Intergenic Intergenic 88518 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 472-41 chr10 111962359 111962635 + 3 NA Intergenic MER92B|LTR|ERV1 221268 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 426-246 chr5 117056241 117056479 + 3 NA Intergenic Intergenic -294151 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 495-193 chr5 30213041 30213230 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 332575 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 523-208 chr4 141094068 141094426 + 3 NA intron (NM_020724, intron 1 of 6) L1ME3E|LINE|L1 39222 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 488-210 chr5 53044442 53044707 + 3 NA intron (NR_073106, intron 3 of 29) intron (NR_073106, intron 3 of 29) 55222 NR_073107 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 897-39 chr8 136627121 136627666 + 3 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 96595 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 681-64 chr5 68413430 68413777 + 3 NA Intergenic Intergenic 121026 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 505-35 chr10 102153156 102153536 + 3 NA intron (NM_001284388, intron 1 of 12) intron (NM_001284388, intron 1 of 12) 957 NM_004741 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 488-12 chr1 159268832 159269083 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -20757 NM_002001 2205 Hs.897 NM_002001 ENSG00000179639 FCER1A FCE1A|FcERI Fc fragment of IgE receptor Ia protein-coding 558-226 chr8 136290112 136290397 + 3 NA Intergenic Intergenic -240544 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 643-106 chr6 104889388 104889829 + 3 NA Intergenic Intergenic -29689 NR_146789 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 193-83 chr18 9998171 9998247 + 3 NA Intergenic L1M2|LINE|L1 84193 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 735-83 chr8 127155435 127155824 + 3 NA Intergenic L1PB1|LINE|L1 41998 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 383-268 chr4 6155049 6155206 + 3 NA intron (NM_144720, intron 1 of 12) intron (NM_144720, intron 1 of 12) 39492 NM_001306133 152789 Hs.479066 NM_144720 ENSG00000152969 JAKMIP1 Gababrbp|JAMIP1|MARLIN1 janus kinase and microtubule interacting protein 1 protein-coding 868-42 chr7 106403356 106403936 + 3 NA Intergenic Intergenic -118663 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 565-7 chr1 118930459 118930741 + 3 NA intron (NM_152380, intron 2 of 7) AluSx1|SINE|Alu 57743 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 740-83 chrX 124907507 124908024 + 3 NA intron (NM_014253, intron 1 of 30) intron (NM_014253, intron 1 of 30) 56052 NM_001163278 10178 Hs.23796 NM_014253 ENSG00000009694 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1|ten-1 teneurin transmembrane protein 1 protein-coding 837-31 chr3 191462172 191462594 + 3 NA TTS (NM_001083308) TTS (NM_001083308) 1220 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 244-77 chr13 47044893 47045054 + 3 NA Intergenic Intergenic -147897 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 708-61 chr5 81780588 81780937 + 3 NA Intergenic Intergenic -29509 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 491-283 chrX 20625507 20625797 + 3 NA Intergenic Intergenic -358743 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 598-115 chr5 132241532 132241802 + 3 NA Intergenic L1ME3|LINE|L1 -13814 NM_001017974 8974 Hs.519568 NM_004199 ENSG00000072682 P4HA2 MYP25 prolyl 4-hydroxylase subunit alpha 2 protein-coding 645-87 chr4 61529355 61529696 + 3 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 327353 NM_001371342 333-251 chr2 95263152 95263279 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -11234 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 488-301 chrX 86710311 86710591 + 3 NA intron (NM_001139515, intron 5 of 11) L1MC2|LINE|L1 447483 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 418-86 chr16 7621766 7622124 + 3 NA intron (NM_001142333, intron 10 of 14) MER58B|DNA|hAT-Charlie 289100 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 918-26 chr8 72277588 72277981 + 3 NA Intergenic Intergenic -26150 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 620-96 chr4 19430527 19430801 + 3 NA Intergenic L1M4|LINE|L1 -821241 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 548-194 chr6 27360806 27361099 + 3 NA intron (NR_024553, intron 4 of 4) intron (NR_024553, intron 4 of 4) 10573 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 830-18 chr16 75712244 75712589 + 3 NA Intergenic Intergenic -10955 NM_001351309 100033411 NM_001351307 ENSG00000282757 DUXB - double homeobox B protein-coding 534-236 chr7 55721752 55722105 + 3 NA Intergenic AluSx|SINE|Alu -17361 NR_003949 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 596-42 chr12 13845345 13845661 + 3 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 134853 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 411-167 chr21 15543526 15543798 + 3 NA Intergenic L1M1|LINE|L1 -186272 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 477-13 chr1 97862160 97862408 + 3 NA intron (NM_000110, intron 2 of 22) L1M6|LINE|L1 58775 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 408-308 chr7 2950007 2950241 + 3 NA intron (NM_001324281, intron 3 of 25) L1MB8|LINE|L1 93743 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 490-4 chr1 49464549 49464863 + 3 NA intron (NR_046839, intron 2 of 3) intron (NR_046839, intron 2 of 3) 7379 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 411-28 chr10 56772344 56772548 + 3 NA Intergenic L1M4|LINE|L1 -411173 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 493-156 chr2 102574208 102574429 + 3 NA Intergenic L1MA5|LINE|L1 -45235 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 521-3 chr1 37177880 37178107 + 3 NA Intergenic Intergenic 16430 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 963-5 chr11 104768171 104768627 + 3 NA Intergenic Intergenic 130271 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 1045-6 chr18 7724137 7724733 + 3 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 157119 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 453-131 chr2 189939566 189939845 + 3 NA Intergenic L1M3f|LINE|L1 123024 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 508-27 chr10 52833090 52833305 + 3 NA Intergenic L1MA4|LINE|L1 -61497 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 986-21 chr3 77318078 77318764 + 3 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 220409 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 754-20 chr14 71312808 71313186 + 3 NA Intergenic L2a|LINE|L2 -7479 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 475-120 chr2 1020635 1020815 + 3 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -69333 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 453-97 chr18 13919301 13919581 + 3 NA Intergenic Intergenic -3734 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 540-168 chr5 8043791 8044104 + 3 NA Intergenic Intergenic 174799 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 815-15 chr14 28425709 28426230 + 3 NA Intergenic L1MEg|LINE|L1 339350 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 362-220 chr2 99025969 99026197 + 3 NA intron (NM_001349013, intron 13 of 16) L1MB7|LINE|L1 -89858 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 611-95 chr21 32016727 32017049 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 69407 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 751-51 chr4 54130891 54131373 + 3 NA Intergenic Intergenic 30969 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 488-218 chr5 93993351 93993527 + 3 NA intron (NR_028080, intron 3 of 8) intron (NR_028080, intron 3 of 8) 118224 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 548-174 chr5 2615537 2615857 + 3 NA Intergenic Intergenic -96894 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 595-137 chr5 144691929 144692241 + 3 NA Intergenic L1MCa|LINE|L1 486694 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 766-72 chr8 137610743 137611338 + 3 NA Intergenic AluSq2|SINE|Alu -197452 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 410-183 chr3 8566124 8566373 + 3 NA intron (NM_014583, intron 5 of 5) intron (NM_014583, intron 5 of 5) -5534 NR_024065 29931 Hs.433151 NM_013343 LINC00312 ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312 long intergenic non-protein coding RNA 312 ncRNA 508-98 chr2 56570227 56570529 + 3 NA Intergenic Intergenic -384608 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 585-41 chr14 62736574 62736986 + 3 NA intron (NM_172375, intron 9 of 9) LTR19A|LTR|ERV1 308678 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 440-38 chr12 4578189 4578373 + 3 NA intron (NM_001371301, intron 2 of 14) L1MEd|LINE|L1 -11791 NM_003845 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 745-40 chr3 183528798 183529135 + 3 NA intron (NM_130446, intron 1 of 6) L1PA13|LINE|L1 -19769 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 468-243 chr5 35580334 35580529 + 3 NA Intergenic Intergenic -37432 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 441-244 chr7 33409911 33410211 + 3 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 280497 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 780-48 chr5 53242806 53243147 + 3 NA Intergenic Intergenic 133134 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 458-168 chr3 35476182 35476416 + 3 NA Intergenic L1MC|LINE|L1 -82276 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 485-152 chr2 184242320 184242666 + 3 NA Intergenic Intergenic -136482 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 592-59 chr16 47754430 47754809 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -103962 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 412-277 chr6 63359757 63359929 + 3 NA Intergenic L1PA4|LINE|L1 -39860 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 445-58 chr13 65670064 65670217 + 3 NA Intergenic L1MA9|LINE|L1 -195907 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 335-402 chr4 172468753 172468963 + 3 NA intron (NM_001034845, intron 5 of 12) LTR50|LTR|ERVL 220059 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 472-234 chr4 113004654 113004891 + 3 NA intron (NM_001354275, intron 2 of 43) Tigger3b|DNA|TcMar-Tigger -44642 NM_020977 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 580-76 chr2 18362863 18363196 + 3 NA Intergenic L2a|LINE|L2 197624 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 452-76 chr14 47882610 47882895 + 3 NA Intergenic Intergenic -87738 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 490-50 chr11 21518456 21518785 + 3 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -674465 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 515-101 chr19 33533403 33533630 + 3 NA Intergenic Intergenic -11725 NM_001166056 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 459-35 chr10 65309617 65309843 + 3 NA Intergenic Intergenic -261695 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 704-53 chr3 111597115 111597458 + 3 NA intron (NM_001318889, intron 5 of 7) intron (NM_001318889, intron 5 of 7) -1940 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 500-152 chr2 154125330 154125579 + 3 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 181060 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 528-231 chr7 25592589 25592824 + 3 NA TTS (NR_157808) TTS (NR_157808) 70434 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 600-30 chr12 115388869 115389208 + 3 NA Intergenic Intergenic -704863 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 648-31 chr12 114440278 114440512 + 3 NA Intergenic CpG -31953 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 715-76 chr6 55394858 55395171 + 3 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 67545 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 257-290 chr4 30680762 30680914 + 3 NA Intergenic Intergenic -39531 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 248-44 chr10 79133558 79133663 + 3 NA intron (NM_020338, intron 2 of 24) intron (NM_020338, intron 2 of 24) 64644 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 593-41 chr13 107046904 107047109 + 3 NA Intergenic Intergenic 273957 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 1059-5 chr13 57427199 57427794 + 3 NA Intergenic L1PA10|LINE|L1 -204248 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 317-150 chr14 62646218 62646412 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 399143 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 529-193 chr6 38799784 38800178 + 3 NA intron (NM_001371, intron 20 of 91) AluJo|SINE|Alu 84670 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 729-30 chr17 21906960 21907510 + 3 NA Intergenic (ATGGAATGGA)n|Simple_repeat|Simple_repeat 214712 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 245-252 chr4 40914568 40914687 + 3 NA intron (NM_173075, intron 9 of 16) Tigger17a|DNA|TcMar-Tigger -57435 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 507-159 chr3 46459189 46459379 + 3 NA intron (NM_001321122, intron 5 of 19) intron (NM_001321122, intron 5 of 19) 4370 NM_001199149 4057 Hs.529517 NM_002343 ENSG00000012223 LTF GIG12|HEL110|HLF2|LF lactotransferrin protein-coding 545-71 chr14 59176837 59177245 + 3 NA Intergenic Intergenic -11626 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 309-99 chr12 25659839 25659993 + 3 NA Intergenic Intergenic -11338 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 814-7 chr10 68859183 68859600 + 3 NA intron (NM_152709, intron 1 of 3) intron (NM_152709, intron 1 of 3) 31854 NM_001130159 219736 Hs.37636 NM_152709 ENSG00000165730 STOX1 C10orf24 storkhead box 1 protein-coding 635-108 chr8 83134630 83134950 + 3 NA Intergenic L1M4b|LINE|L1 222686 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 319-588 chrX 96313022 96313237 + 3 NA Intergenic Intergenic 24773 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 726-39 chr19 56418562 56419161 + 3 NA intron (NM_001159860, intron 4 of 4) L1ME2|LINE|L1 14529 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 492-290 chrX 80203463 80203713 + 3 NA Intergenic L1PB4|LINE|L1 131730 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 397-305 chr7 51844392 51844674 + 3 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -451277 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 1260-7 chr8 138152546 138153430 + 3 NA exon (NM_001362965, exon 13 of 20) exon (NM_001362965, exon 13 of 20) -69443 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 404-13 chr1 87780650 87780859 + 3 NA Intergenic Intergenic -409099 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 417-194 chr4 39017570 39017741 + 3 NA intron (NM_001303228, intron 1 of 6) L1MEd|LINE|L1 14754 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 778-12 chr10 111877658 111878048 + 3 NA Intergenic Intergenic 305912 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 492-146 chr2 224714723 224714976 + 3 NA Intergenic Intergenic -129452 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 539-139 chr22 35254708 35255003 + 3 NA Intergenic Intergenic -2638 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 805-50 chr9 11383155 11383629 + 3 NA Intergenic L1MB1|LINE|L1 770186 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 599-76 chr22 27875789 27876125 + 3 NA intron (NM_001284278, intron 7 of 11) intron (NM_001284278, intron 7 of 11) 43257 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 633-32 chr12 58119740 58120098 + 3 NA Intergenic Intergenic 32027 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 452-157 chr20 58587214 58587425 + 3 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -47453 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 436-195 chr3 145662304 145662535 + 3 NA Intergenic Intergenic 406766 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 239-329 chr5 123203160 123203288 + 3 NA Intergenic Intergenic -112908 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 688-17 chr10 122649546 122650022 + 3 NA Intergenic MER63B|DNA|hAT-Blackjack -23098 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 935-16 chr17 70285640 70286159 + 3 NA Intergenic L1MA7|LINE|L1 116364 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 534-122 chr2 102382991 102383260 + 3 NA intron (NM_003855, intron 6 of 10) L1MEg2|LINE|L1 26842 NM_003855 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 1102-12 chr5 12483487 12484000 + 3 NA Intergenic Intergenic -91114 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 679-18 chr11 8115865 8116321 + 3 NA intron (NM_001135109, intron 1 of 1) L1MA8|LINE|L1 34731 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 624-76 chr20 57102870 57103404 + 3 NA Intergenic Intergenic -110559 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 310-486 chr7 81934492 81934665 + 3 NA Intergenic Intergenic -74599 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 504-256 chr8 75110653 75110931 + 3 NA Intergenic L1MA9|LINE|L1 110637 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 678-31 chr15 97676953 97677355 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -116456 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 202-40 chr11 27259154 27259259 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR -39093 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 302-494 chrX 54872001 54872193 + 3 NA Intergenic L1MD|LINE|L1 -48466 NM_001271183 7216 Hs.633653 NM_016157 ENSG00000067445 TRO MAGE-d3|MAGED3 trophinin protein-coding 671-112 chrX 84413860 84414237 + 3 NA intron (NM_001177478, intron 4 of 9) intron (NM_001177478, intron 4 of 9) 88405 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 334-42 chr1 242554989 242555162 + 3 NA Intergenic Intergenic -30378 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 323-541 chr8 72711962 72712118 + 3 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -20005 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 601-96 chr3 122418567 122418886 + 3 NA intron (NR_125405, intron 1 of 2) intron (NR_125405, intron 1 of 2) 2520 NR_125405 102723582 Hs.675056 NR_125405 ENSG00000272758 LOC102723582 - uncharacterized LOC102723582 ncRNA 378-283 chr3 77405385 77405606 + 3 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 307483 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 547-138 chr3 89888521 89888887 + 3 NA Intergenic Intergenic 781083 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 282-135 chr14 79255065 79255272 + 3 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -24212 NM_001272020 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 405-279 chr6 67967953 67968114 + 3 NA Intergenic Intergenic -87318 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 272-259 chr3 22788640 22788784 + 3 NA Intergenic L1MB8|LINE|L1 413866 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 783-66 chr6 55489554 55489876 + 3 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 89499 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 437-40 chr11 50243063 50243216 + 3 NA Intergenic Intergenic 55323 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 638-66 chr2 53309788 53310063 + 3 NA Intergenic L1MA8|LINE|L1 -457858 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 558-224 chr8 133974251 133974610 + 3 NA Intergenic L2a|LINE|L2 87934 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 520-287 chr7 128661170 128661442 + 3 NA TTS (NR_024368) TTS (NR_024368) -10960 NM_001128926 346653 Hs.445236 NM_001012454 ENSG00000205085 FAM71F2 FAM137B family with sequence similarity 71 member F2 protein-coding 629-29 chr11 100311202 100311560 + 3 NA intron (NM_001243270, intron 20 of 23) L2a|LINE|L2 -375907 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 414-161 chr2 118555165 118555399 + 3 NA Intergenic Intergenic 47684 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 739-65 chr7 38687974 38688399 + 3 NA Intergenic L2|LINE|L2 -1097 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 846-54 chr7 53214196 53214629 + 3 NA Intergenic L1M3de|LINE|L1 178779 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 518-122 chr2 15220773 15221065 + 3 NA intron (NM_015909, intron 47 of 51) intron (NM_015909, intron 47 of 51) 340415 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 489-211 chr5 135081318 135081575 + 3 NA intron (NR_161235, intron 2 of 5) HAL1|LINE|L1 -41399 NR_105049 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 Epist C5orf66 antisense RNA 1 ncRNA 437-97 chr16 35921681 35921979 + 3 NA Intergenic ALR/Alpha|Satellite|centr 175278 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 408-347 chr8 133160052 133160284 + 3 NA Intergenic L1MC4a|LINE|L1 -30871 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 523-80 chr14 75212377 75212615 + 3 NA Intergenic Intergenic -35884 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 292-179 chr18 4828618 4828769 + 3 NA Intergenic L1ME2|LINE|L1 -252489 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 654-38 chr14 82531473 82531782 + 3 NA Intergenic HAL1b|LINE|L1 -111005 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 465-175 chr3 88716235 88716539 + 3 NA Intergenic L1MA1|LINE|L1 377931 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 572-10 chr1 198120083 198120502 + 3 NA Intergenic MER119|DNA|hAT-Charlie -36706 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 375-157 chr16 61136787 61136981 + 3 NA Intergenic Intergenic -81118 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 825-44 chr6 78152427 78152846 + 3 NA Intergenic LTR9D|LTR|ERV1 386673 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 285-141 chr16 12325433 12325571 + 3 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 348768 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 454-276 chr6 79768226 79768461 + 3 NA Intergenic L1MB5|LINE|L1 43903 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 500-227 chr5 57123939 57124227 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -49865 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 449-50 chr12 14073780 14074046 + 3 NA Intergenic Intergenic -93557 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 755-8 chr1 163636238 163636660 + 3 NA Intergenic Intergenic -213258 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 830-17 chr16 74196487 74196861 + 3 NA intron (NR_104657, intron 3 of 3) intron (NR_104657, intron 3 of 3) 18847 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 363-182 chr17 69894435 69894655 + 3 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -67162 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 402-106 chr16 74054182 74054375 + 3 NA Intergenic L2a|LINE|L2 161243 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 451-200 chr6 116805039 116805197 + 3 NA intron (NM_001286354, intron 3 of 5) intron (NM_001286354, intron 3 of 5) 23939 NM_148963 222545 Hs.266745 NM_148963 ENSG00000173612 GPRC6A GPCR|bA86F4.3 G protein-coupled receptor class C group 6 member A protein-coding 551-27 chr11 20229835 20230142 + 3 NA Intergenic L1MB4|LINE|L1 -69513 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 592-145 chr5 113770640 113770962 + 3 NA Intergenic Intergenic 257107 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 421-145 chr2 108310757 108310941 + 3 NA TTS (NM_176825) TTS (NM_176825) -11389 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 707-10 chr1 239668394 239668779 + 3 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 39513 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 1143-2 chr10 9430490 9431150 + 3 NA Intergenic Intergenic -135227 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 822-66 chr9 25731952 25732369 + 3 NA Intergenic L1P1|LINE|L1 -47896 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 952 chr1 37428682 37429320 + 3 NA Intergenic MIR|SINE|MIR 45442 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 478-215 chr4 102689436 102689687 + 3 NA intron (NM_005908, intron 7 of 16) intron (NM_005908, intron 7 of 16) 71407 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 499-262 chr8 75580028 75580256 + 3 NA Intergenic L1MC1|LINE|L1 40174 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 281-123 chr14 66975191 66975335 + 3 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -214177 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 557-192 chr8 37656592 37656808 + 3 NA Intergenic AluSq2|SINE|Alu -39082 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 385-301 chr5 80112979 80113239 + 3 NA intron (NR_126061, intron 13 of 13) L1ME4a|LINE|L1 -29444 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 574-195 chr9 134308105 134308296 + 3 NA Intergenic Intergenic -12803 NR_146518 105376310 Hs.573484 NR_146518 ENSG00000223729 LINC02247 - long intergenic non-protein coding RNA 2247 ncRNA 611-14 chr10 48582224 48582581 + 3 NA intron (NM_001347736, intron 3 of 3) intron (NM_001347736, intron 3 of 3) 22671 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 991-17 chr4 155329088 155329489 + 3 NA Intergenic Intergenic -24928 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 282-379 chr5 73182670 73182892 + 3 NA Intergenic Intergenic 9588 NM_153217 134288 Hs.508588 NM_153217 ENSG00000164325 TMEM174 - transmembrane protein 174 protein-coding 707-78 chr5 13193670 13194057 + 3 NA Intergenic LTR37A|LTR|ERV1 -160977 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 579-154 chr7 25521212 25521585 + 3 NA Intergenic Intergenic 141742 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 509-247 chr8 46069245 46069530 + 3 NA Intergenic ALR/Alpha|Satellite|centr 548256 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 306-86 chr11 95901244 95901473 + 3 NA intron (NM_016156, intron 1 of 14) intron (NM_016156, intron 1 of 14) 22749 NM_001243571 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 558-2 chr1 29487863 29488052 + 3 NA Intergenic (AAGGTC)n|Simple_repeat|Simple_repeat -137843 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 741-65 chr7 41478603 41479001 + 3 NA Intergenic Intergenic -215117 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 418-215 chr5 55308613 55308804 + 3 NA intron (NM_015360, intron 1 of 26) intron (NM_015360, intron 1 of 26) 719 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 928-28 chr6 54932191 54932629 + 3 NA intron (NM_001010872, intron 4 of 4) L1M4|LINE|L1 85639 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 515-135 chr2 205625635 205625943 + 3 NA Intergenic Intergenic -56711 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 336-562 chr8 134268723 134268865 + 3 NA Intergenic Intergenic -329277 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 880-47 chr8 98864560 98865134 + 3 NA intron (NM_001256312, intron 3 of 12) MLT1J|LTR|ERVL-MaLR -39159 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 450-73 chr13 73478093 73478298 + 3 NA Intergenic L1MC4a|LINE|L1 -86049 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 758-69 chr7 8134741 8135027 + 3 NA intron (NM_001350836, intron 13 of 14) intron (NM_001350836, intron 13 of 14) 127168 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 454-44 chr10 119777648 119777815 + 3 NA intron (NM_014937, intron 2 of 19) intron (NM_014937, intron 2 of 19) -41526 NM_001243194 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 379-214 chr3 60676438 60676655 + 3 NA intron (NM_001320900, intron 5 of 9) L2a|LINE|L2 -58676 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 397-226 chr4 74858595 74858877 + 3 NA Intergenic Intergenic -64213 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 486-237 chr5 26354717 26354911 + 3 NA Intergenic L1MA4A|LINE|L1 683772 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 521-5 chr1 48521521 48521698 + 3 NA Intergenic Intergenic -49401 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 611-17 chr10 96364463 96364833 + 3 NA TTS (NM_012465) TTS (NM_012465) -5283 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 741-4 chr1 203094845 203095207 + 3 NA Intergenic L1MEc|LINE|L1 -9014 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 669-93 chr5 162659530 162659923 + 3 NA Intergenic Intergenic 592084 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 499-252 chr7 119887190 119887392 + 3 NA intron (NR_131960, intron 1 of 4) L1MA3|LINE|L1 20084 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 1030-5 chr1 180570263 180570680 + 3 NA Intergenic L1MC4|LINE|L1 11497 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 1009 chr1 59205432 59205988 + 3 NA Intergenic Intergenic -58903 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 216-188 chr2 210996689 210996787 + 3 NA Intergenic Intergenic 379167 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 442-194 chr3 116329225 116329538 + 3 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -30643 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 498-179 chr3 171907688 171908011 + 3 NA Intergenic Intergenic -7109 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 418-313 chrX 98297728 98297897 + 3 NA Intergenic Intergenic -733277 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 810-3 chr10 85460381 85460902 + 3 NA intron (NR_120671, intron 3 of 5) intron (NR_120671, intron 3 of 5) 11049 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 873-21 chr3 37310363 37310712 + 3 NA intron (NM_001172713, intron 11 of 22) intron (NM_001172713, intron 11 of 22) -66342 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 440-78 chr15 58201453 58201736 + 3 NA Intergenic L1MB7|LINE|L1 63213 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 544-61 chr13 113577729 113578049 + 3 NA Intergenic L1M4|LINE|L1 -6799 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 771-32 chr16 72749972 72750337 + 3 NA Intergenic L1MEi|LINE|L1 -85184 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 415-77 chr14 87782006 87782291 + 3 NA Intergenic Intergenic -126854 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 502-276 chr8 127089056 127089328 + 3 NA non-coding (NR_109833, exon 1 of 1) non-coding (NR_109833, exon 1 of 1) -6971 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 737-6 chr1 225188018 225188485 + 3 NA intron (NM_001367479, intron 37 of 85) MER44D|DNA|TcMar-Tigger 239787 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 473-98 chr15 96923811 96924120 + 3 NA Intergenic Intergenic 140530 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 1043-6 chr2 237652776 237653405 + 3 NA intron (NM_001137550, intron 1 of 23) MSTA|LTR|ERVL-MaLR 25503 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 538-112 chr2 79545565 79545878 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 22538 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 693-93 chr7 11567398 11567739 + 3 NA intron (NM_015204, intron 4 of 26) MER5B|DNA|hAT-Charlie 264630 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 458-151 chr2 192931356 192931680 + 3 NA Intergenic L2b|LINE|L2 181673 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 213-26 chr10 5429650 5429737 + 3 NA intron (NM_001047160, intron 3 of 11) MER102b|DNA|hAT-Charlie -16858 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 524-99 chr18 64302080 64302384 + 3 NA intron (NR_033881, intron 5 of 9) Tigger7|DNA|TcMar-Tigger -42177 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 671-74 chr5 9313184 9313493 + 3 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -197995 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 431-14 chr1 83633247 83633410 + 3 NA intron (NR_119375, intron 2 of 2) LTR79|LTR|ERVL 187274 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 439-287 chr8 102379389 102379587 + 3 NA intron (NM_001282873, intron 1 of 58) intron (NM_001282873, intron 1 of 58) 33201 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 532-105 chr19 32831122 32831322 + 3 NA intron (NM_001126335, intron 12 of 12) intron (NM_001126335, intron 12 of 12) 38545 NM_001243036 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 330-324 chr20 55949625 55949774 + 3 NA Intergenic L2a|LINE|L2 55820 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 515-199 chr5 25862799 25863005 + 3 NA Intergenic MER65A|LTR|ERV1 671949 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 473-24 chr1 239887841 239888048 + 3 NA intron (NM_001347716, intron 7 of 7) Arthur1C|DNA|hAT-Tip100 11928 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 469-227 chr5 144553921 144554112 + 3 NA Intergenic L1PA15|LINE|L1 348625 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 458-251 chr8 63497666 63497877 + 3 NA Intergenic L1M4|LINE|L1 31922 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 212-11 chr1 115254600 115254690 + 3 NA Intergenic Intergenic -28389 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 495-233 chr7 35026408 35026684 + 3 NA intron (NM_015283, intron 1 of 21) MER5A|DNA|hAT-Charlie 10939 NM_001366673 23333 Hs.408623 NM_015283 ENSG00000173852 DPY19L1 - dpy-19 like C-mannosyltransferase 1 protein-coding 1485 chr19 27618359 27619329 + 3 NA Intergenic ALR/Alpha|Satellite|centr -174587 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 445-69 chr14 63293999 63294187 + 3 NA TTS (NM_020663) TTS (NM_020663) 24842 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 422-76 chr14 53510317 53510467 + 3 NA Intergenic Intergenic 357038 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 388-7 chr1 70708067 70708332 + 3 NA intron (NR_125938, intron 2 of 6) intron (NR_125938, intron 2 of 6) 1746 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 645-81 chr3 140222212 140222474 + 3 NA intron (NM_022131, intron 2 of 16) L1MA2|LINE|L1 286446 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 491-56 chr12 127542224 127542401 + 3 NA Intergenic Intergenic 94155 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 436-295 chr8 41433307 41433520 + 3 NA Intergenic MLT2B1|LTR|ERVL 6758 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 548-161 chr4 47051283 47051531 + 3 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 19840 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 680-73 chr20 31309452 31309858 + 3 NA Intergenic L1M1|LINE|L1 -1070 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 511-245 chr7 31213538 31213841 + 3 NA Intergenic Intergenic 127037 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 469-60 chr11 118953035 118953385 + 3 NA Intergenic Intergenic -3088 NM_006760 7379 Hs.379613 NM_006760 ENSG00000110375 UPK2 UP2|UPII uroplakin 2 protein-coding 231-322 chr7 7485331 7485413 + 3 NA intron (NM_001037763, intron 13 of 34) L1MD|LINE|L1 50501 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 599-20 chr11 6044515 6044871 + 3 NA Intergenic AluSg|SINE|Alu -16952 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 454-352 chrX 95596095 95596372 + 3 NA Intergenic Intergenic -533007 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 558-30 chr11 30771037 30771410 + 3 NA Intergenic MIR|SINE|MIR -184870 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 507-2 chr1 34447961 34448259 + 3 NA Intergenic Intergenic 221584 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 559-51 chr14 82291975 82292222 + 3 NA Intergenic MIRb|SINE|MIR -350534 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 630-39 chr17 21328510 21328721 + 3 NA Intergenic L1M8|LINE|L1 40579 NM_002756 5606 Hs.514012 NM_002756 ENSG00000034152 MAP2K3 MAPKK3|MEK3|MKK3|PRKMK3|SAPKK-2|SAPKK2 mitogen-activated protein kinase kinase 3 protein-coding 462-42 chr11 21520035 21520236 + 3 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -672950 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 657-103 chr8 136419578 136419927 + 3 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -111046 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 449-227 chr5 166413180 166413487 + 3 NA Intergenic L1P4|LINE|L1 513037 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 538-103 chr2 7399801 7399992 + 3 NA Intergenic Intergenic -21365 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 577-107 chr21 15476709 15476991 + 3 NA Intergenic L1ME1|LINE|L1 -253084 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 734-26 chr18 6307458 6307862 + 3 NA intron (NM_001365769, intron 3 of 16) intron (NM_001365769, intron 3 of 16) 50916 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 615-73 chr20 43810976 43811273 + 3 NA Intergenic L1MB7|LINE|L1 -83594 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 1120-7 chr2 221903990 221904561 + 3 NA Intergenic L1ME3A|LINE|L1 -330073 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 910-3 chr1 195943852 195944326 + 3 NA Intergenic Intergenic 144626 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 877-9 chr17 34751309 34751835 + 3 NA Intergenic Intergenic 170823 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 772-45 chr6 62403761 62404257 + 3 NA Intergenic Intergenic -117782 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 868-9 chr11 127372508 127372866 + 3 NA Intergenic HAL1|LINE|L1 101617 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 596-18 chr10 15866753 15867206 + 3 NA Intergenic LTR16A1|LTR|ERVL -6446 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 669-86 chr5 17911765 17912198 + 3 NA intron (NR_134286, intron 5 of 7) intron (NR_134286, intron 5 of 7) 104707 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 234-167 chr2 59694916 59695066 + 3 NA Intergenic L1MEd|LINE|L1 477283 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 592-155 chr6 119913772 119913993 + 3 NA Intergenic Intergenic -101297 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 371-168 chr2 68885353 68885530 + 3 NA Intergenic Intergenic -14044 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 732-8 chr10 53097235 53097504 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -325669 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 465-295 chr8 113666777 113667040 + 3 NA Intergenic Intergenic -229969 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 471-83 chr14 63083243 63083491 + 3 NA Intergenic L1MA4A|LINE|L1 -37909 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 402-321 chr7 78699977 78700258 + 3 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -308871 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 439-248 chr6 62820470 62820732 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 499376 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 362-395 chr6 162807966 162808120 + 3 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 80073 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 464-187 chr4 101483705 101483931 + 3 NA Intergenic Intergenic 136041 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 296-131 chr14 25919469 25919598 + 3 NA Intergenic Intergenic 633897 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 828-33 chr3 162398796 162399167 + 3 NA Intergenic Intergenic 902173 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 508-74 chr17 17423078 17423378 + 3 NA Intergenic Intergenic -53772 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 923-13 chr2 107650315 107650721 + 3 NA Intergenic Intergenic -103594 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 763-60 chr7 19845707 19846250 + 3 NA Intergenic Intergenic -72361 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 515-90 chr17 79551177 79551508 + 3 NA intron (NM_001350451, intron 1 of 14) MSTB|LTR|ERVL-MaLR -35194 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 536-5 chr1 67614189 67614407 + 3 NA Intergenic Intergenic -70903 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 625-62 chr21 19740871 19741337 + 3 NA Intergenic Intergenic 158651 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 940-14 chr2 128917846 128918384 + 3 NA Intergenic L1M4|LINE|L1 53515 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 606-27 chr11 2491778 2492003 + 3 NA intron (NM_181798, intron 1 of 15) L1M1|LINE|L1 30436 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 240-257 chr20 16982233 16982333 + 3 NA Intergenic Intergenic 233930 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 704-39 chr2 46284341 46284660 + 3 NA Intergenic L2a|LINE|L2 -12907 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 412-114 chr16 80347486 80347661 + 3 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -193161 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 549-126 chr2 240661500 240661806 + 3 NA Intergenic L1MC1|LINE|L1 21232 NM_001102467 653437 Hs.437167 NM_001102467 ENSG00000185176 AQP12B INSSA3 aquaporin 12B protein-coding 301-176 chr18 47621850 47622024 + 3 NA Intergenic L1MEf|LINE|L1 241441 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 494-111 chr18 70725634 70725865 + 3 NA Intergenic Intergenic -74795 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 371-152 chr19 37734120 37734247 + 3 NA Intergenic AluSc8|SINE|Alu -14422 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 623-81 chr3 13759713 13760148 + 3 NA Intergenic L1PA15|LINE|L1 109209 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 758-30 chr15 80728585 80728936 + 3 NA intron (NM_021214, intron 1 of 2) intron (NM_021214, intron 1 of 2) 33450 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 388-323 chr7 40680944 40681171 + 3 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 298882 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 472-210 chr3 118390990 118391287 + 3 NA Intergenic L1MDa|LINE|L1 -250630 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 366-170 chr17 69585660 69585916 + 3 NA Intergenic L1PA16|LINE|L1 -8199 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 442-32 chr10 90976025 90976212 + 3 NA intron (NR_131214, intron 3 of 5) L2b|LINE|L2 28818 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 453-144 chr20 47085542 47085945 + 3 NA intron (NM_172110, intron 7 of 13) L1ME1|LINE|L1 -81224 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 351-337 chr4 31568384 31568597 + 3 NA Intergenic Intergenic 61946 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 516 chr1 34537884 34538135 + 3 NA Intergenic Intergenic 131685 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 296-239 chr2 124673626 124673838 + 3 NA intron (NM_130773, intron 13 of 23) MIRb|SINE|MIR 648445 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 565-57 chr17 47910313 47910577 + 3 NA intron (NR_103856, intron 2 of 2) MER112|DNA|hAT-Charlie 14209 NM_003110 6668 Hs.514276 NM_003110 ENSG00000167182 SP2 - Sp2 transcription factor protein-coding 343-267 chr2 122694478 122694676 + 3 NA Intergenic Intergenic 378904 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 505-270 chr6 75412677 75412895 + 3 NA intron (NR_125859, intron 3 of 8) (ATATGT)n|Simple_repeat|Simple_repeat -15621 NR_039670 100616389 NR_039670 ENSG00000263533 MIR4463 - microRNA 4463 ncRNA 1189-6 chr8 102018788 102019455 + 3 NA intron (NM_001040624, intron 3 of 7) L1M5|LINE|L1 34689 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 489-202 chr5 31051651 31051870 + 3 NA Intergenic Intergenic -141926 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 408-118 chr15 80375396 80375591 + 3 NA Intergenic Intergenic -28889 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 456-145 chr2 6842456 6842681 + 3 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -2104 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 241-411 chr8 135598200 135598305 + 3 NA intron (NM_006558, intron 6 of 8) intron (NM_006558, intron 6 of 8) 140796 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 489-236 chr7 31702930 31703274 + 3 NA intron (NM_001145123, intron 3 of 3) MIRb|SINE|MIR 15887 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 371-408 chr9 24183911 24184066 + 3 NA Intergenic L1ME3|LINE|L1 -333387 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 500-171 chr21 10753220 10753489 + 3 NA Intergenic ALR/Alpha|Satellite|centr 231840 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 335-364 chr3 130596269 130596437 + 3 NA intron (NM_001102608, intron 17 of 35) intron (NM_001102608, intron 17 of 35) 36019 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 476-231 chr5 144807784 144808094 + 3 NA Intergenic L1PA12|LINE|L1 602548 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 379-102 chr15 54983577 54983796 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -73061 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 572-108 chr3 77649533 77649802 + 3 NA 3' UTR (NM_002942, exon 26 of 26) 3' UTR (NM_002942, exon 26 of 26) 399296 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 326-376 chr4 66713029 66713206 + 3 NA Intergenic AluJr|SINE|Alu 436293 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 231-105 chr14 98374764 98374898 + 3 NA Intergenic Intergenic -336782 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 930-11 chr14 84801681 84802263 + 3 NA Intergenic Intergenic -469960 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 316-11 chr1 70089431 70089552 + 3 NA intron (NM_001370785, intron 24 of 26) intron (NM_001370785, intron 24 of 26) 116088 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 577-146 chr5 36816395 36816739 + 3 NA Intergenic L1MEi|LINE|L1 60127 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 528-140 chr2 226176442 226176783 + 3 NA intron (NR_046102, intron 5 of 6) intron (NR_046102, intron 5 of 6) 33818 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 593-150 chr8 87601916 87602191 + 3 NA Intergenic L1ME3B|LINE|L1 271962 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 457-156 chr3 41008667 41009053 + 3 NA Intergenic L1M4c|LINE|L1 -190645 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 317-527 chr9 75798390 75798560 + 3 NA Intergenic Intergenic -92169 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 355-480 chr7 125691952 125692108 + 3 NA Intergenic L1M5|LINE|L1 -427739 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 402-118 chr18 6473712 6473927 + 3 NA Intergenic L2|LINE|L2 -37597 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 580-51 chr15 27483487 27483762 + 3 NA intron (NM_033223, intron 6 of 9) intron (NM_033223, intron 6 of 9) -322305 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 561-60 chr13 87310902 87311162 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 307708 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 431-328 chrX 116272643 116272818 + 3 NA Intergenic Intergenic 101986 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 592-74 chr19 30104337 30104576 + 3 NA Intergenic Intergenic 162217 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 508-252 chr9 1139670 1139931 + 3 NA Intergenic L1M3b|LINE|L1 88313 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 376-268 chr4 31907244 31907473 + 3 NA Intergenic Intergenic -90021 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 731-78 chr9 28259439 28259960 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 459606 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 365-295 chr4 95643885 95644125 + 3 NA Intergenic LTR57|LTR|ERVL -95032 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 506-59 chr11 92488054 92488288 + 3 NA intron (NM_001008781, intron 1 of 24) MLT1F2|LTR|ERVL-MaLR 136075 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 722-14 chr10 62318374 62318742 + 3 NA Intergenic Intergenic -49714 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 663-92 chr6 64626889 64627217 + 3 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -674365 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 731-29 chr14 89487316 89487635 + 3 NA intron (NM_001085471, intron 1 of 6) MER5A|DNA|hAT-Charlie 70121 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 354-345 chr4 103904868 103905035 + 3 NA Intergenic Intergenic -184966 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 416-358 chrX 51656275 51656527 + 3 NA Intergenic L1ME1|LINE|L1 26430 NM_001355278 441495 Hs.187774 NM_001355278 ENSG00000283093 CENPVL2 CENPVP2 centromere protein V like 2 protein-coding 721-42 chr2 236805107 236805509 + 3 NA Intergenic Intergenic 235483 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 523-190 chr3 161040420 161040674 + 3 NA intron (NR_134243, intron 4 of 5) intron (NR_134243, intron 4 of 5) 64185 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 355-145 chr13 86790006 86790234 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -121800 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 487-196 chr3 169915775 169916099 + 3 NA intron (NM_182610, intron 2 of 8) L1MA10|LINE|L1 4365 NM_182610 344658 Hs.439922 NM_182610 ENSG00000187033 SAMD7 - sterile alpha motif domain containing 7 protein-coding 348-379 chr4 131451225 131451345 + 3 NA Intergenic Intergenic -313553 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 668-55 chr20 42996334 42996644 + 3 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 27746 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 263-256 chr3 65468983 65469095 + 3 NA intron (NM_001365904, intron 5 of 24) intron (NM_001365904, intron 5 of 24) -424777 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 151-28 chr16 48476771 48476863 + 3 NA Intergenic L1MCa|LINE|L1 -91404 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 214-309 chr7 137865290 137865450 + 3 NA Intergenic LTR16A|LTR|ERVL -18506 NM_001321708 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 547-60 chr14 23814662 23814872 + 3 NA Intergenic Intergenic -139003 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 404-352 chrX 121777188 121777373 + 3 NA Intergenic L1PB3|LINE|L1 406308 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 474-238 chr5 102646212 102646518 + 3 NA intron (NR_103753, intron 1 of 2) L1MA2|LINE|L1 25099 NR_103754 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 555-46 chr12 128240382 128240710 + 3 NA Intergenic Intergenic -26857 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 427-267 chr8 125993472 125993646 + 3 NA Intergenic HERVP71A-int|LTR|ERV1 -42362 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 543-82 chr15 91517898 91518089 + 3 NA Intergenic L1ME3|LINE|L1 54654 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 412-154 chr2 57525512 57525793 + 3 NA Intergenic L1PB4|LINE|L1 -381999 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 412-334 chr8 126306027 126306185 + 3 NA Intergenic L1MEc|LINE|L1 -19389 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 252-272 chr3 116694880 116695025 + 3 NA Intergenic Intergenic -14836 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 800-25 chr15 94986791 94987229 + 3 NA Intergenic L1MD1|LINE|L1 131647 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 462-283 chr8 88473325 88473528 + 3 NA Intergenic L1MEg|LINE|L1 -145943 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 551-150 chr5 31710135 31710392 + 3 NA intron (NM_178140, intron 1 of 24) LTR103_Mam|LTR|ERV1? 71132 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 969 chr1 87782454 87782997 + 3 NA Intergenic Intergenic -411070 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 703-83 chr6 149184603 149184889 + 3 NA Intergenic L1PB1|LINE|L1 -33178 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 341-11 chr1 49808554 49808760 + 3 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 215297 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 553-180 chr4 111969499 111969719 + 3 NA Intergenic L1ME4a|LINE|L1 -175845 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 430-60 chr12 11576540 11576730 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 28605 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 335-578 chrX 40653596 40653762 + 3 NA intron (NM_004229, intron 30 of 30) intron (NM_004229, intron 30 of 30) -6118 NM_144970 159013 Hs.495961 NM_144970 ENSG00000185753 CXorf38 - chromosome X open reading frame 38 protein-coding 462-217 chr4 162695218 162695483 + 3 NA Intergenic L1MA5|LINE|L1 398278 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 374-88 chr13 78077235 78077404 + 3 NA intron (NR_047001, intron 1 of 5) L1ME3G|LINE|L1 22464 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 456-109 chr15 69708303 69708531 + 3 NA Intergenic THE1A-int|LTR|ERVL-MaLR 116217 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 526-204 chr5 123626717 123626932 + 3 NA Intergenic AluSz6|SINE|Alu 81407 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 688-47 chr15 25052190 25052551 + 3 NA TTS (NR_003316) TTS (NR_003316) 894 NR_003316 100033413 NR_003316 ENSG00000207063 SNORD116-1 HBII-85-1|PWCR1 small nucleolar RNA, C/D box 116-1 snoRNA 535-46 chr11 123761135 123761428 + 3 NA Intergenic L1ME2|LINE|L1 -6763 NM_001005188 390260 Hs.553759 NM_001005188 ENSG00000221931 OR6X1 OR11-270 olfactory receptor family 6 subfamily X member 1 protein-coding 630-52 chr2 63105243 63105642 + 3 NA Intergenic L1MA4A|LINE|L1 14100 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 508-247 chr8 132294429 132294727 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 152684 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 652-26 chr11 37697290 37697709 + 3 NA Intergenic Intergenic -241102 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 379-374 chr9 26606636 26606860 + 3 NA Intergenic MER68-int|LTR|ERVL 286054 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 615-110 chr5 82960667 82961047 + 3 NA Intergenic L1ME3A|LINE|L1 -101021 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 624-85 chr3 190531507 190531888 + 3 NA intron (NM_001364879, intron 1 of 10) intron (NM_001364879, intron 1 of 10) 17612 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 708-6 chr10 8373315 8373671 + 3 NA Intergenic MIRb|SINE|MIR -105188 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 702-92 chr7 26939284 26939776 + 3 NA Intergenic AluSq2|SINE|Alu -74940 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 590-24 chr11 74201474 74201755 + 3 NA intron (NM_001271593, intron 1 of 13) MIRb|SINE|MIR 30325 NM_001271593 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 468-164 chr2 163811302 163811584 + 3 NA Intergenic L3|LINE|CR1 -75435 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 687-103 chr6 54405538 54405801 + 3 NA Intergenic Intergenic 97228 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 1422-3 chr5 5602922 5603785 + 3 NA Intergenic HAL1ME|LINE|L1 180676 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 417-61 chr12 65089771 65090032 + 3 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 31404 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 399-169 chr2 179359822 179359985 + 3 NA Intergenic Intergenic -95071 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 771-20 chr12 119497393 119497828 + 3 NA intron (NM_178499, intron 5 of 13) intron (NM_178499, intron 5 of 13) -96164 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 190-189 chr8 137997839 137997923 + 3 NA intron (NR_161374, intron 2 of 7) L1MEc|LINE|L1 85664 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 485-189 chr3 111277488 111277779 + 3 NA Intergenic Intergenic 205817 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 540-107 chr2 12605545 12605924 + 3 NA Intergenic MIRb|SINE|MIR -111138 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 565-77 chr2 57222250 57222596 + 3 NA Intergenic L1MD3|LINE|L1 -685228 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 424-113 chr18 75573563 75573722 + 3 NA Intergenic Intergenic 138761 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 663-100 chr6 158967652 158967922 + 3 NA Intergenic L1M4|LINE|L1 32400 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 771-48 chr2 239356193 239356618 + 3 NA intron (NM_006037, intron 1 of 26) intron (NM_006037, intron 1 of 26) -4601 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 717-51 chr20 41901953 41902353 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger -283776 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 493-277 chr7 56441142 56441402 + 3 NA intron (NR_029420, intron 1 of 5) L1MA3|LINE|L1 7103 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 416-213 chr22_KI270738v1_random 66767 67036 + 3 NA NA Intergenic NA NA 494-61 chr13 105816938 105817249 + 3 NA Intergenic Intergenic 110263 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 695-43 chr18 56062642 56063054 + 3 NA intron (NR_148972, intron 3 of 8) MIRb|SINE|MIR 20570 NR_146510 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 475-235 chr5 174449195 174449457 + 3 NA intron (NR_125806, intron 2 of 5) AluJr|SINE|Alu 112972 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 525-30 chr10 62015924 62016259 + 3 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -33266 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 506-20 chr1 179526405 179526596 + 3 NA intron (NR_073544, intron 22 of 25) MIRb|SINE|MIR 49448 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 456-134 chr18 11571007 11571262 + 3 NA Intergenic AluJo|SINE|Alu -38424 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 589-55 chr19 36394651 36395034 + 3 NA intron (NM_001321917, intron 4 of 4) intron (NM_001321917, intron 4 of 4) -15641 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 747-69 chr8 119037994 119038491 + 3 NA intron (NM_001324095, intron 3 of 7) MIRb|SINE|MIR -29005 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 745-58 chr6 41263282 41263701 + 3 NA Intergenic L1P4|LINE|L1 14114 NR_002794 221438 Hs.639392 NR_002794 TREML5P TLT5|TREML2P|TREML2P1 triggering receptor expressed on myeloid cells like 5, pseudogene pseudo 505-313 chr8 125450649 125450861 + 3 NA Intergenic L1ME1|LINE|L1 18546 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 367-98 chr12 112782475 112782679 + 3 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -8961 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 666-26 chr13 95784466 95784775 + 3 NA intron (NM_006260, intron 9 of 11) MER68|LTR|ERVL 107481 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 629-74 chr20 15494810 15495148 + 3 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 298139 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 547-20 chr10 54093101 54093319 + 3 NA intron (NM_001354411, intron 16 of 34) intron (NM_001354411, intron 16 of 34) -393020 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 584-149 chr6 63910675 63911038 + 3 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 104020 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 524-64 chr14 60045233 60045497 + 3 NA intron (NR_075071, intron 29 of 32) L1PA11|LINE|L1 -46546 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 410-47 chr11 27938156 27938332 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -118571 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 555-178 chr6 129357700 129358072 + 3 NA intron (NM_000426, intron 32 of 64) intron (NM_000426, intron 32 of 64) 352291 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 578-99 chr2 226420148 226420424 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 238507 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 446-270 chr6 120187697 120187941 + 3 NA Intergenic Intergenic 172640 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 544-33 chr10 83476610 83476908 + 3 NA Intergenic MIRb|SINE|MIR 200330 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 488-290 chr9 35580128 35580341 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -16356 NM_001287238 730112 Hs.98959 NM_001099951 ENSG00000215187 FAM166B - family with sequence similarity 166 member B protein-coding 537-201 chr5 125246409 125246721 + 3 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 209734 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 409-80 chr14 73386669 73386865 + 3 NA intron (NM_001005743, intron 2 of 12) intron (NM_001005743, intron 2 of 12) 71813 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 639-3 chr1 90677037 90677432 + 3 NA Intergenic L1MEf|LINE|L1 19484 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 551-205 chr8 31887987 31888368 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -137559 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 665-101 chr7 154487226 154487702 + 3 NA intron (NR_157196, intron 3 of 25) intron (NR_157196, intron 3 of 25) 182305 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 484-116 chr2 21281220 21281520 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 157384 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 293-169 chr18 65702648 65702800 + 3 NA Intergenic Intergenic -47528 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 533-245 chr9 79065648 79065829 + 3 NA Intergenic Intergenic 79928 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 718-25 chr14 78326800 78327266 + 3 NA intron (NR_073547, intron 4 of 20) MIR|SINE|MIR -76686 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 493-230 chr4 186137335 186137565 + 3 NA intron (NM_001367768, intron 1 of 13) intron (NM_001367768, intron 1 of 13) -6837 NM_001006655 25854 Hs.744961 NM_015398 ENSG00000109794 FAM149A MST119|MSTP119 family with sequence similarity 149 member A protein-coding 394-142 chr18 7465739 7465888 + 3 NA Intergenic Intergenic -4807 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 487-94 chr15 24623365 24623584 + 3 NA Intergenic L1M4|LINE|L1 -51920 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 630-146 chr8 135193430 135193763 + 3 NA Intergenic Intergenic -40535 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 468-191 chr3 25087551 25087778 + 3 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) -253138 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 564-44 chr12 86427251 86427672 + 3 NA intron (NM_001351286, intron 3 of 7) intron (NM_001351286, intron 3 of 7) -170162 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 649-36 chr17 63139589 63140072 + 3 NA intron (NM_025185, intron 4 of 25) AluJr|SINE|Alu 173595 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 703-54 chr22 19645654 19646137 + 3 NA Intergenic L1ME1|LINE|L1 -68608 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 347-161 chr16 6872835 6873015 + 3 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 99116 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 426-230 chr5 36009617 36009802 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -8687 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 256-47 chr10 67847591 67847776 + 3 NA Intergenic L1ME4b|LINE|L1 -9495 NM_021800 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 757-39 chr3 88029540 88029898 + 3 NA Intergenic L1ME5|LINE|L1 29277 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 340-431 chr5 13642248 13642394 + 3 NA Intergenic MIR|SINE|MIR 302159 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 216-36 chr10 60560719 60560826 + 3 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 12184 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 850-31 chr3 187285903 187286378 + 3 NA intron (NM_139125, intron 1 of 10) intron (NM_139125, intron 1 of 10) -5132 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 475-20 chr10 37890128 37890494 + 3 NA Intergenic L1ME3Cz|LINE|L1 -32208 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 214-316 chr8 67809623 67809753 + 3 NA Intergenic Intergenic -63328 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 369-238 chr20 5421330 5421496 + 3 NA Intergenic L1PB3|LINE|L1 24335 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 554-203 chr8 91172861 91173185 + 3 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -32462 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 238-257 chr4 35237703 35237866 + 3 NA Intergenic L1MB8|LINE|L1 -968037 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 689-107 chrX 88968729 88969000 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger 221639 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 659-8 chr10 14123341 14123708 + 3 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 49240 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 732-68 chr4 39214582 39215192 + 3 NA intron (NM_025132, intron 10 of 36) AluSx|SINE|Alu 32358 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 649-119 chr9 32208010 32208303 + 3 NA Intergenic Intergenic -176447 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 406-318 chrX 47423319 47423555 + 3 NA Intergenic AluSx|SINE|Alu 34787 NR_003710 100124540 Hs.693443 NR_003710 ENSG00000221459 SNORA11C - small nucleolar RNA, H/ACA box 11C snoRNA 1200-4 chr2 144690200 144690848 + 3 NA intron (NR_033870, intron 1 of 4) L2a|LINE|L2 22557 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 1003-12 chr2 115389647 115390221 + 3 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 46119 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 758-9 chr10 33343592 33344209 + 3 NA Intergenic Intergenic -8995 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 434-283 chr8 73716994 73717250 + 3 NA intron (NM_001164380, intron 3 of 14) intron (NM_001164380, intron 3 of 14) 29718 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 486-269 chr7 4860200 4860385 + 3 NA exon (NM_020144, exon 1 of 1) exon (NM_020144, exon 1 of 1) 1738 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 787-6 chr12 34508162 34508567 + 3 NA Intergenic ALR/Alpha|Satellite|centr 485868 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 511-96 chr18 55705618 55705883 + 3 NA Intergenic L1ME2z|LINE|L1 -69793 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 462-258 chr7 15788034 15788280 + 3 NA Intergenic L1MA3|LINE|L1 99779 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 426-279 chr7 141109062 141109303 + 3 NA intron (NM_001195278, intron 1 of 3) THE1B|LTR|ERVL-MaLR 35118 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 354-465 chr8 86976650 86976904 + 3 NA intron (NM_173538, intron 4 of 10) L1MA7|LINE|L1 110362 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 518-243 chr5 141171867 141172105 + 3 NA promoter-TSS (NM_018940) promoter-TSS (NM_018940) -658 NM_018940 56129 Hs.203830 NM_018940 ENSG00000113212 PCDHB7 PCDH-BETA7 protocadherin beta 7 protein-coding 321-14 chr1 87887006 87887150 + 3 NA Intergenic Intergenic -515423 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 210-132 chr2 82364457 82364612 + 3 NA Intergenic L2a|LINE|L2 -492269 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 415-290 chr8 113417453 113417617 + 3 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 19404 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 484-7 chr1 75402501 75402719 + 3 NA intron (NM_001320285, intron 2 of 25) L1PA7|LINE|L1 208504 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 349-252 chr2 50798703 50798905 + 3 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -102542 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 730-81 chr8 136556423 136556927 + 3 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 25877 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 416-94 chr12 73536407 73536609 + 3 NA Intergenic Intergenic 377318 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 466-16 chr1 194902625 194902799 + 3 NA Intergenic Intergenic 1186003 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 615-61 chr2 59169196 59169530 + 3 NA Intergenic Intergenic -48345 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 575-14 chr1 237750838 237751113 + 3 NA intron (NM_001035, intron 80 of 104) intron (NM_001035, intron 80 of 104) -111200 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 712-12 chr10 25889509 25889861 + 3 NA Intergenic MIR|SINE|MIR 44025 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 554-188 chr7 1683581 1683892 + 3 NA Intergenic L1MB8|LINE|L1 -4383 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 323-501 chr7 62788635 62788785 + 3 NA Intergenic ALR/Alpha|Satellite|centr 515346 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 342-450 chr6 48405314 48405505 + 3 NA Intergenic L1ME1|LINE|L1 -336720 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 824-41 chr5 141217015 141217455 + 3 NA 3' UTR (NM_018933, exon 1 of 1) 3' UTR (NM_018933, exon 1 of 1) 3316 NM_018933 56123 Hs.283803 NM_018933 ENSG00000187372 PCDHB13 PCDH-BETA13 protocadherin beta 13 protein-coding 509-189 chr5 45965483 45965703 + 3 NA Intergenic ALR/Alpha|Satellite|centr -269213 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 509-130 chr20 55593161 55593397 + 3 NA Intergenic L1M5|LINE|L1 -166082 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 418-69 chr14 53530692 53531024 + 3 NA Intergenic Intergenic 377504 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 911-6 chr13 97490518 97490892 + 3 NA Intergenic L1MEg|LINE|L1 56536 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 661-85 chr6 69355442 69355897 + 3 NA intron (NM_001704, intron 27 of 31) intron (NM_001704, intron 27 of 31) 440797 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 586-51 chr14 63169334 63169643 + 3 NA Intergenic L1MA7|LINE|L1 -34955 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 576-65 chr17 61117694 61117919 + 3 NA intron (NM_001330413, intron 23 of 25) L1MC1|LINE|L1 249898 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 513-8 chr1 95666619 95666915 + 3 NA Intergenic LTR16|LTR|ERVL 156651 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 464-235 chr7 25959370 25959633 + 3 NA Intergenic Intergenic -9515 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 436-209 chr4 60949409 60949582 + 3 NA Intergenic Intergenic 26876 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 239-274 chr4 36851629 36851797 + 3 NA Intergenic Intergenic -150066 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 380-306 chr5 60936648 60936815 + 3 NA intron (NM_001007234, intron 1 of 5) L1PB1|LINE|L1 8339 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 380-78 chr11 121709732 121709890 + 3 NA Intergenic L1ME4a|LINE|L1 257497 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 227-29 chr1 247916296 247916450 + 3 NA Intergenic Intergenic -4645 NM_001005522 343172 Hs.521114 NM_001005522 ENSG00000177462 OR2T8 OR2T8P olfactory receptor family 2 subfamily T member 8 protein-coding 505-50 chr11 69545683 69545972 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 60266 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 264-148 chr15 76762922 76763075 + 3 NA intron (NR_148227, intron 14 of 32) L1MA9|LINE|L1 98946 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 554-92 chr17 51861991 51862217 + 3 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 296610 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 551-7 chr1 95205563 95205889 + 3 NA intron (NR_125949, intron 2 of 3) intron (NR_125949, intron 2 of 3) 28256 NR_125949 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 663-75 chr4 61039633 61040101 + 3 NA Intergenic Intergenic -103789 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 468-344 chrX 73678858 73679026 + 3 NA intron (NM_001300884, intron 3 of 4) intron (NM_001300884, intron 3 of 4) -113263 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 446-55 chr10 112569658 112569850 + 3 NA intron (NM_001365712, intron 6 of 8) MER5A|DNA|hAT-Charlie -64416 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 304-170 chr15 87203025 87203206 + 3 NA Intergenic Intergenic -214689 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 337-502 chr6 124780358 124780554 + 3 NA intron (NM_001040214, intron 4 of 6) L2c|LINE|L2 -182089 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 522-218 chr6 35706544 35706755 + 3 NA intron (NM_001145775, intron 2 of 11) L1ME4b|LINE|L1 -17707 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 288-444 chr8 89033601 89033738 + 3 NA Intergenic L1PA16|LINE|L1 -706186 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 469-30 chr10 51265319 51265644 + 3 NA intron (NM_001098512, intron 2 of 17) MER53|DNA|hAT -34092 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 256-324 chr5 95618417 95618592 + 3 NA Intergenic Intergenic -1583 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 843-4 chr10 56987173 56987618 + 3 NA Intergenic Intergenic 317164 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 363-12 chr1 107323801 107324030 + 3 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 175846 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 511-213 chr5 124236941 124237157 + 3 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 201471 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 572-136 chr5 38306603 38306830 + 3 NA intron (NM_152403, intron 1 of 21) MLT1G1|LTR|ERVL-MaLR -15730 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 341-10 chr1 48560399 48560553 + 3 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -88268 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 749-60 chr20 19471752 19472274 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -187417 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 565-44 chr14 79798144 79798438 + 3 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) -413128 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 462-141 chr2 126028545 126028816 + 3 NA Intergenic L1M4b|LINE|L1 89305 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 382-209 chr2 116713983 116714200 + 3 NA Intergenic MIRb|SINE|MIR -1100600 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 919-28 chr9 103583254 103583851 + 3 NA Intergenic Intergenic -258519 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 509-210 chr5 171766827 171767078 + 3 NA Intergenic HAL1M8|LINE|L1 -18920 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 865-41 chr7 26482006 26482496 + 3 NA intron (NR_148500, intron 2 of 5) MER63C|DNA|hAT-Blackjack 56574 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 516-137 chr2 152859448 152859713 + 3 NA Intergenic Intergenic 140943 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 400-207 chr3 2209545 2209802 + 3 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -29156 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 395-329 chr8 34596559 34596743 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -187270 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 483-78 chr15 96802337 96802669 + 3 NA Intergenic Intergenic 19068 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 524-151 chr3 62523109 62523333 + 3 NA intron (NM_003716, intron 13 of 29) intron (NM_003716, intron 13 of 29) -149671 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 493-187 chr21 27303332 27303522 + 3 NA Intergenic MER34B-int|LTR|ERV1 -336339 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 471-103 chr17 53035124 53035528 + 3 NA Intergenic L2a|LINE|L2 49821 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 458-109 chr18 68299554 68299730 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger 415466 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 553-197 chr5 161465366 161465626 + 3 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 82628 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 461-62 chr12 40918336 40918607 + 3 NA intron (NM_001256064, intron 3 of 15) intron (NM_001256064, intron 3 of 15) 10114 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 871-9 chr17 68598734 68599118 + 3 NA intron (NM_001243746, intron 1 of 11) intron (NM_001243746, intron 1 of 11) 2441 NM_017565 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 274-152 chr16 60601715 60601875 + 3 NA Intergenic L1ME3A|LINE|L1 -242002 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 367-85 chr12 17919097 17919315 + 3 NA Intergenic L1ME1|LINE|L1 170987 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 569-48 chr12 88135310 88135632 + 3 NA intron (NM_025114, intron 6 of 53) intron (NM_025114, intron 6 of 53) 6745 NM_025114 80184 Hs.150444 NM_025114 ENSG00000198707 CEP290 3H11Ag|BBS14|CT87|JBTS5|LCA10|MKS4|NPHP6|POC3|SLSN6|rd16 centrosomal protein 290 protein-coding 415-15 chr1 173005751 173005907 + 3 NA Intergenic L1M1|LINE|L1 45134 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 303-130 chr14 79207983 79208149 + 3 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 8084 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 648-134 chr7 33135314 33135622 + 3 NA intron (NM_001348044, intron 1 of 18) L1MB7|LINE|L1 5904 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 774-85 chr8 105187229 105187655 + 3 NA Intergenic Intergenic -130996 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 368-267 chr20 52826352 52826520 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR -145922 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 796-56 chr7 78519959 78520447 + 3 NA intron (NM_001301128, intron 4 of 20) intron (NM_001301128, intron 4 of 20) 172961 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 405-132 chr2 30134383 30134656 + 3 NA Intergenic Intergenic -12488 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 594-14 chr10 52048979 52049323 + 3 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) 264977 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 424-19 chr10 7711697 7711913 + 3 NA intron (NM_002216, intron 4 of 20) MER20B|DNA|hAT-Charlie 8489 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 791-4 chr1 114047995 114048414 + 3 NA Intergenic MLT2B3|LTR|ERVL 68730 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 382-31 chr10 44216554 44216772 + 3 NA Intergenic L1MEg|LINE|L1 -76087 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 466-232 chr6 142179299 142179538 + 3 NA intron (NM_001286371, intron 4 of 6) L1ME2|LINE|L1 32155 NM_016485 51534 Hs.431367 NM_016485 ENSG00000009844 VTA1 C6orf55|DRG-1|DRG1|HSPC228|LIP5|My012|SBP1 vesicle trafficking 1 protein-coding 473-87 chr14 66580293 66580508 + 3 NA intron (NM_001024218, intron 1 of 21) L1M1|LINE|L1 72993 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 991-7 chr11 112860463 112860855 + 3 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat -100761 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 467-3 chr1 41586863 41587135 + 3 NA intron (NM_024503, intron 3 of 8) L4_B_Mam|LINE|RTE-X -102316 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 320-270 chr2 115158833 115158970 + 3 NA intron (NR_036580, intron 1 of 2) intron (NR_036580, intron 1 of 2) 2442 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 463-5 chr1 38749376 38749538 + 3 NA Intergenic Intergenic 110315 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 382-3 chr1 25051127 25051393 + 3 NA Intergenic L2b|LINE|L2 27757 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 436-293 chr8 16373232 16373400 + 3 NA Intergenic Intergenic -180525 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 649-14 chr11 80972677 80973018 + 3 NA Intergenic L2|LINE|L2 -210044 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 245-337 chr8 14359021 14359201 + 3 NA intron (NM_001322881, intron 2 of 6) L1M1|LINE|L1 494399 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 506-91 chr14 87541442 87541768 + 3 NA Intergenic Intergenic 113689 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 468-49 chr11 54805194 54805473 + 3 NA Intergenic ALR/Alpha|Satellite|centr 98501 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 303-482 chr8 139450419 139450595 + 3 NA Intergenic Intergenic 252616 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 289-363 chr5 21794986 21795162 + 3 NA intron (NM_004061, intron 10 of 14) intron (NM_004061, intron 10 of 14) -89380 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 354-97 chr11 133616119 133616379 + 3 NA Intergenic L1MEg|LINE|L1 -83748 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 334-15 chr1 76599885 76600105 + 3 NA intron (NR_146056, intron 4 of 5) MLT1A|LTR|ERVL-MaLR 179272 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 543-172 chr3 150707429 150707664 + 3 NA intron (NR_121674, intron 2 of 3) THE1C|LTR|ERVL-MaLR 3571 NR_121674 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 436-113 chr18 12405385 12405639 + 3 NA Intergenic AluSz|SINE|Alu -2417 NM_006553 10650 Hs.514718 NM_006553 ENSG00000141391 PRELID3A C18orf43|HFL-EDDG1|SLMO1 PRELI domain containing 3A protein-coding 408-71 chr11 100273611 100273764 + 3 NA intron (NM_001243270, intron 17 of 23) L1PA13|LINE|L1 -413601 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 649-23 chr13 28948205 28948582 + 3 NA intron (NM_001366651, intron 2 of 14) L3|LINE|CR1 -76064 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 635-17 chr10 96146180 96146494 + 3 NA intron (NM_001330737, intron 4 of 6) L1ME3Cz|LINE|L1 15715 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 459-61 chr12 16988221 16988398 + 3 NA promoter-TSS (NR_036619) promoter-TSS (NR_036619) -438 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 333-319 chr21 24339339 24339576 + 3 NA Intergenic LTR52-int|LTR|ERVL -18080 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 693-47 chr18 59173759 59174156 + 3 NA Intergenic L1MEc|LINE|L1 34073 NM_001307941 90701 Hs.45107 NM_033280 ENSG00000166562 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C, signal peptidase complex subunit protein-coding 882-8 chr10 120305499 120305855 + 3 NA Intergenic FLAM_A|SINE|Alu 49546 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 522-236 chr7 64989195 64989437 + 3 NA intron (NM_001348050, intron 1 of 3) L1PREC2|LINE|L1 1720 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 315-87 chr11 78378243 78378370 + 3 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) -36426 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 647-84 chr5 104697920 104698310 + 3 NA Intergenic L1PA15-16|LINE|L1 -401359 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 333-508 chr6 95968694 95968898 + 3 NA Intergenic L1MA9|LINE|L1 -47178 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 727-63 chr5 74226403 74226722 + 3 NA Intergenic Intergenic 81763 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 503-228 chr5 27861301 27861496 + 3 NA Intergenic Intergenic 389106 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 455-118 chr2 26545379 26545556 + 3 NA intron (NM_194248, intron 1 of 46) L1ME2|LINE|L1 13289 NM_001287489 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 311-350 chr3 111285476 111285634 + 3 NA Intergenic L2b|LINE|L2 213739 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 475-220 chr5 25339555 25339748 + 3 NA Intergenic Intergenic 148698 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 257-220 chr2 181589639 181589821 + 3 NA intron (NR_027690, intron 2 of 11) L1MC5|LINE|L1 67375 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 485-184 chr3 96455787 96455977 + 3 NA Intergenic L1MA4|LINE|L1 95918 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 710-41 chr2 97985027 97985446 + 3 NA intron (NM_015348, intron 1 of 40) L1M3|LINE|L1 10712 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 455-187 chr4 84534446 84534623 + 3 NA Intergenic AluSg4|SINE|Alu -36300 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 496-281 chr8 68887462 68887653 + 3 NA Intergenic Intergenic 216633 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 321-243 chr18 11443119 11443317 + 3 NA Intergenic L1M4a1|LINE|L1 -11260 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 496-132 chr2 65725617 65725830 + 3 NA Intergenic MER21C|LTR|ERVL -293124 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 467-190 chr3 173959986 173960190 + 3 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -39292 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 384-342 chr7 32519539 32519704 + 3 NA intron (NM_015060, intron 1 of 15) MER4B-int|LTR|ERV1 24132 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 787-32 chr4 35394838 35395190 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 848925 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 484-102 chr18 44659248 44659432 + 3 NA Intergenic Intergenic -20733 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 314-94 chr11 38701787 38701926 + 3 NA Intergenic Intergenic 52998 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 424-229 chr5 143463086 143463334 + 3 NA Intergenic L1ME1|LINE|L1 -27698 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 577-43 chr11 60387423 60387727 + 3 NA intron (NM_021201, intron 4 of 6) intron (NM_021201, intron 4 of 6) -8439 NM_001261827 84689 Hs.709736 NM_032597 ENSG00000166928 MS4A14 MS4A16|NYD-SP21 membrane spanning 4-domains A14 protein-coding 387-382 chr9 11141881 11142146 + 3 NA Intergenic Intergenic 528807 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 493-317 chr9 94304074 94304304 + 3 NA Intergenic Intergenic 24455 NM_017561 54754 Hs.648183 NM_017561 ENSG00000130950 NUTM2F FAM22F|NUTMF NUT family member 2F protein-coding 455-42 chr11 14002120 14002369 + 3 NA intron (NM_006108, intron 2 of 15) MER5A|DNA|hAT-Charlie 39521 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 449-295 chr9 113005355 113005641 + 3 NA intron (NM_001101338, intron 2 of 4) L1ME3G|LINE|L1 6694 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 378-462 chrX 6967548 6967799 + 3 NA Intergenic MER39B|LTR|ERV1 -179617 NM_001320750 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 1132-10 chr4 103989931 103990692 + 3 NA Intergenic L1MA3|LINE|L1 -270326 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 449-113 chr2 22101922 22102072 + 3 NA Intergenic L1MEc|LINE|L1 -391345 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 497-214 chr5 2414972 2415175 + 3 NA Intergenic Intergenic -102872 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 1075-2 chr1 218507644 218508307 + 3 NA intron (NR_031644, intron 2 of 6) THE1C-int|LTR|ERVL-MaLR -2120 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 666-27 chr14 37553509 37553831 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger 41579 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 619-39 chr14 25180748 25181053 + 3 NA Intergenic LTR33A|LTR|ERVL -130603 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 446-14 chr1 105901242 105901462 + 3 NA Intergenic LOR1-int|LTR|ERV1 126901 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 307-151 chr14 83799665 83799830 + 3 NA Intergenic Intergenic 1157115 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 759-65 chr7 41479857 41480303 + 3 NA Intergenic Intergenic -213839 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 367-472 chr9 1905903 1906163 + 3 NA Intergenic Intergenic -109314 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 912-24 chr2 122302933 122303380 + 3 NA Intergenic L1PA15|LINE|L1 547505 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 356-519 chrX 98969795 98969951 + 3 NA Intergenic Intergenic -1405338 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 537-154 chr3 51832917 51833169 + 3 NA Intergenic L1M4a1|LINE|L1 6160 NM_001085479 401067 Hs.729443 NM_001085479 ENSG00000229972 IQCF3 - IQ motif containing F3 protein-coding 507-86 chr14 68757020 68757198 + 3 NA Intergenic Intergenic 36805 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 809-47 chr7 3422318 3422764 + 3 NA intron (NM_152744, intron 1 of 44) AluJo|SINE|Alu 121289 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 604-97 chr20 41976387 41976609 + 3 NA Intergenic Intergenic -358121 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 575-100 chr20 19445128 19445339 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -160637 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 375-327 chr5 93397397 93397557 + 3 NA Intergenic Intergenic 173866 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 444-84 chr16 27387722 27387967 + 3 NA Intergenic Intergenic -14330 NM_181079 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 451-175 chr5 57964786 57965012 + 3 NA Intergenic L1PB4|LINE|L1 -65737 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 732-80 chr6 40651275 40651632 + 3 NA Intergenic Intergenic -64089 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 415-97 chr17 54705146 54705329 + 3 NA Intergenic L1ME2|LINE|L1 -195454 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 877-12 chr2 20239052 20239469 + 3 NA Intergenic AluJr|SINE|Alu -13827 NM_001006946 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 409-184 chr21 31449332 31449543 + 3 NA intron (NM_001353690, intron 1 of 27) AluSx|SINE|Alu -105083 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 506-270 chr7 62976740 62976973 + 3 NA Intergenic MER11C|LTR|ERVK 327200 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 389-383 chr9 89796161 89796319 + 3 NA Intergenic Intergenic 156457 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 619-21 chr10 83787984 83788190 + 3 NA Intergenic L1PB4|LINE|L1 -110998 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 390-364 chr7 110281893 110282129 + 3 NA Intergenic Intergenic -321798 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 483-143 chr20 55661917 55662152 + 3 NA Intergenic Intergenic -234837 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 946-22 chr6 27453723 27454313 + 3 NA intron (NM_001347832, intron 5 of 5) intron (NM_001347832, intron 5 of 5) 18880 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 492-21 chr10 41808036 41808356 + 3 NA Intergenic ALR/Alpha|Satellite|centr 559849 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 722-65 chr6 38625885 38626270 + 3 NA intron (NM_052893, intron 1 of 11) intron (NM_052893, intron 1 of 11) 13852 NM_001099272 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 1002-12 chr4 85460293 85460805 + 3 NA Intergenic MIRb|SINE|MIR -14601 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 474-59 chr12 16428059 16428456 + 3 NA Intergenic L1M8|LINE|L1 74840 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 307-360 chr4 174259191 174259327 + 3 NA intron (NM_012180, intron 3 of 5) intron (NM_012180, intron 3 of 5) -24645 NM_001145314 80817 Hs.555989 NM_030633 ENSG00000164118 CEP44 KIAA1712|PS1TP3 centrosomal protein 44 protein-coding 539-125 chr2 143476759 143477033 + 3 NA intron (NM_018460, intron 8 of 13) intron (NM_018460, intron 8 of 13) 347477 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 564-201 chr8 105188921 105189137 + 3 NA Intergenic L1M3|LINE|L1 -129409 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 444-182 chr4 154051576 154051775 + 3 NA Intergenic MER96B|DNA|hAT-Tip100 -262592 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 625-50 chr2 95824213 95824522 + 3 NA non-coding (NR_103734, exon 1 of 3) non-coding (NR_103734, exon 1 of 3) 2614 NR_103734 150759 Hs.503463 NR_103734 LINC00342 NCRNA00342 long intergenic non-protein coding RNA 342 ncRNA 321-557 chr8 87340929 87341090 + 3 NA intron (NM_173538, intron 8 of 10) L1M4|LINE|L1 474594 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 372-256 chr2 128950426 128950683 + 3 NA Intergenic Intergenic 85954 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 685-44 chr2 62239711 62240097 + 3 NA Intergenic Intergenic 24383 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 280-237 chr21 21493891 21494048 + 3 NA intron (NM_001352592, intron 16 of 18) intron (NM_001352592, intron 16 of 18) 243350 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 289-303 chr3 87876922 87877062 + 3 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) 84286 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 491-237 chr6 168480861 168481091 + 3 NA intron (NM_001166412, intron 1 of 12) L1MB3|LINE|L1 39792 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 440-200 chr5 84421074 84421336 + 3 NA Intergenic HAL1|LINE|L1 -36325 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 517-229 chr5 166136446 166136719 + 3 NA Intergenic L1M2|LINE|L1 789788 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 610-63 chr16 63211433 63211929 + 3 NA Intergenic L1M4|LINE|L1 -1175243 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 1047-15 chr4 31916494 31916926 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -80669 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 386-385 chrX 28319388 28319571 + 3 NA Intergenic L1MA4A|LINE|L1 176184 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 818 chr1 55746193 55746774 + 3 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 198480 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 1226-8 chr8 142257998 142258749 + 3 NA intron (NM_001366901, intron 12 of 13) intron (NM_001366901, intron 12 of 13) 60017 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 539-54 chr12 89190313 89190611 + 3 NA Intergenic L1MA8|LINE|L1 162039 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 524-237 chr7 47065358 47065674 + 3 NA Intergenic Intergenic -368394 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 454-114 chr16 65798506 65798846 + 3 NA Intergenic Intergenic -222376 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 638-83 chr3 39947807 39948167 + 3 NA intron (NM_001284424, intron 2 of 15) MER5B|DNA|hAT-Charlie 138327 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 422-318 chrX 83948892 83949136 + 3 NA Intergenic L1M2|LINE|L1 87868 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 615-75 chr21 30939333 30939723 + 3 NA Intergenic MIR|SINE|MIR -57948 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 492-4 chr1 71392439 71392638 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 311214 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 713-41 chr2 82495184 82495583 + 3 NA Intergenic Intergenic -361420 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 586-92 chr20 54492129 54492411 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 16677 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 257-52 chr10 115848544 115848738 + 3 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 346148 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 515-21 chr10 28287327 28287548 + 3 NA intron (NR_134518, intron 1 of 16) Charlie1a|DNA|hAT-Charlie 1913 NR_107053 102465880 NR_107053 ENSG00000275036 MIR8086 hsa-mir-8086 microRNA 8086 ncRNA 384-26 chr1 210435039 210435189 + 3 NA intron (NM_001122834, intron 7 of 11) L1MA4|LINE|L1 105748 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 583-157 chr7 120445780 120446146 + 3 NA intron (NM_012281, intron 1 of 5) L2c|LINE|L2 172788 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 545-85 chr16 66073455 66073794 + 3 NA Intergenic L1MC2|LINE|L1 -293067 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 373-194 chr2 71986241 71986409 + 3 NA Intergenic L1MEg|LINE|L1 161537 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 478-210 chr4 66208022 66208314 + 3 NA Intergenic L1MB8|LINE|L1 -68656 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 427-107 chr2 29633821 29634069 + 3 NA intron (NM_004304, intron 3 of 28) L1MD1|LINE|L1 -158568 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 768-39 chr5 15641406 15641756 + 3 NA intron (NM_001278317, intron 2 of 3) MLT2B4|LTR|ERVL -26579 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 428-180 chr3 74843031 74843258 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -322004 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 307-502 chr9 5206355 5206474 + 3 NA Intergenic L1MA4|LINE|L1 -20775 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 325-482 chr6 160540664 160540830 + 3 NA intron (NM_005577, intron 35 of 38) MSTB|LTR|ERVL-MaLR -29623 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 714-23 chr14 82482146 82482421 + 3 NA Intergenic LTR82B|LTR|ERVL -160349 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 226-272 chr5 17445727 17445844 + 3 NA non-coding (NR_134271, exon 2 of 2) non-coding (NR_134271, exon 2 of 2) 1775 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 664-70 chr3 9405259 9405680 + 3 NA intron (NM_001080517, intron 1 of 22) intron (NM_001080517, intron 1 of 22) 7769 NM_001080517 55209 Hs.288164 NM_018187 ENSG00000168137 SETD5 - SET domain containing 5 protein-coding 837-33 chr5 5100418 5100896 + 3 NA Intergenic L1MA10|LINE|L1 -22346 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 310-214 chr19 39124042 39124206 + 3 NA Intergenic Intergenic -1662 NM_001014831 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 703-29 chr14 81685084 81685396 + 3 NA Intergenic Intergenic 57898 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 437-7 chr1 77094749 77095011 + 3 NA intron (NM_005482, intron 10 of 10) intron (NM_005482, intron 10 of 10) 34737 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 543-208 chr5 162711674 162711933 + 3 NA Intergenic Intergenic 644161 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 902-29 chr4 174054475 174054968 + 3 NA Intergenic L1MB8|LINE|L1 157448 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 416-230 chr3 117061169 117061324 + 3 NA Intergenic Intergenic 139815 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 468-67 chr13 45596803 45597114 + 3 NA exon (NM_182542, exon 3 of 15) exon (NM_182542, exon 3 of 15) 18781 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 528-176 chr4 60849405 60849677 + 3 NA Intergenic L1ME3A|LINE|L1 -73078 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 478-86 chr14 76684233 76684459 + 3 NA Intergenic L1MA9|LINE|L1 -77122 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 404-166 chr2 76746730 76746976 + 3 NA TTS (NM_001134745) TTS (NM_001134745) -239112 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 493-205 chr3 89397016 89397278 + 3 NA intron (NM_182644, intron 6 of 6) intron (NM_182644, intron 6 of 6) 289526 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 431-85 chr14 84204667 84204946 + 3 NA Intergenic Intergenic -1067126 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 385-277 chr4 83393562 83393747 + 3 NA Intergenic Charlie15b|DNA|hAT-Charlie -58501 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 610-129 chr4 148127150 148127488 + 3 NA intron (NR_148974, intron 4 of 6) intron (NR_148974, intron 4 of 6) 315095 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 497-111 chr2 12862744 12862991 + 3 NA Intergenic L1MEc|LINE|L1 125500 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 748-32 chr14 78518074 78518510 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 114573 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 793-2 chr1 169579893 169580222 + 3 NA intron (NM_000130, intron 2 of 24) L2c|LINE|L2 6474 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 225-175 chr20 6977268 6977417 + 3 NA Intergenic Intergenic 209656 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 505-212 chr4 33416747 33417191 + 3 NA Intergenic MER50|LTR|ERV1 622924 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 711-45 chr3 17597320 17597717 + 3 NA intron (NM_001349088, intron 2 of 21) intron (NM_001349088, intron 2 of 21) 102502 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 462-184 chr3 99657330 99657610 + 3 NA intron (NM_020351, intron 1 of 3) intron (NM_020351, intron 1 of 3) 18876 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 638-51 chr16 6287684 6288136 + 3 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 268207 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 726-50 chr22 34733678 34734069 + 3 NA Intergenic Intergenic 264043 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 350-320 chr3 106798154 106798324 + 3 NA Intergenic L1ME2|LINE|L1 442399 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 573-68 chr14 82128110 82128386 + 3 NA Intergenic Intergenic -385110 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 827-48 chr6 39413612 39414199 + 3 NA intron (NM_001289024, intron 2 of 9) intron (NM_001289024, intron 2 of 9) 17485 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 819-6 chr12 64876087 64876423 + 3 NA 3' UTR (NM_015279, exon 12 of 12) 3' UTR (NM_015279, exon 12 of 12) -7519 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 457-83 chr16 35637366 35637667 + 3 NA Intergenic Intergenic -109036 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 381-257 chr3 121974093 121974231 + 3 NA Intergenic Intergenic 48085 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 1196-9 chr5 174594527 174595070 + 3 NA Intergenic Intergenic -129784 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 1032-17 chr5 141400425 141401174 + 3 NA TTS (NM_032099) TTS (NM_032099) -2154 NM_032089 56107 Hs.368160 NM_018921 ENSG00000261934 PCDHGA9 PCDH-GAMMA-A9 protocadherin gamma subfamily A, 9 protein-coding 561-206 chr8 117391795 117392022 + 3 NA Intergenic Intergenic -128805 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 591-131 chr5 76764186 76764590 + 3 NA Intergenic L1M2|LINE|L1 48262 NM_001311313 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 462-166 chr22 34926452 34926733 + 3 NA intron (NR_138042, intron 1 of 4) L1PA5|LINE|L1 71324 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 667-23 chr12 14425622 14425947 + 3 NA intron (NM_001286515, intron 2 of 12) intron (NM_001286515, intron 2 of 12) 40503 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 503-178 chr20 57192932 57193110 + 3 NA intron (NM_001719, intron 3 of 6) intron (NM_001719, intron 3 of 6) -20675 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 543-17 chr1 207153653 207153961 + 3 NA Intergenic Intergenic 49574 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 370-155 chr15 34478053 34478203 + 3 NA Intergenic Intergenic -40320 NR_027409 23015 Hs.182982 NM_181077 ENSG00000175265 GOLGA8A GM88|GOLGA8B golgin A8 family member A protein-coding 357-29 chr10 12609976 12610116 + 3 NA intron (NM_001351032, intron 4 of 11) MER63B|DNA|hAT-Blackjack 31293 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 626-150 chr9 87110663 87110950 + 3 NA Intergenic L2a|LINE|L2 -25581 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 1278 chr12 124048352 124049026 + 3 NA intron (NM_001347902, intron 2 of 4) HAL1b|LINE|L1 75474 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 796-34 chr3 30380530 30381013 + 3 NA Intergenic L1MA1|LINE|L1 -138097 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 746-35 chr2 14924025 14924402 + 3 NA Intergenic Intergenic 291496 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 819-24 chr4 85268402 85268943 + 3 NA Intergenic Intergenic -206478 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 823-32 chr9 27530935 27531398 + 3 NA Intergenic Intergenic -1352 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 416-95 chr12 75552523 75552719 + 3 NA Intergenic MARNA|DNA|TcMar-Mariner -41012 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 469-216 chr5 35010775 35011004 + 3 NA intron (NM_001306173, intron 9 of 12) intron (NM_001306173, intron 9 of 12) 37060 NM_001306173 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 941-8 chr14 75381156 75381597 + 3 NA Intergenic L1MC3|LINE|L1 -46348 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 555-187 chr7 79079360 79079678 + 3 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 70531 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 676-25 chr12 39129772 39130125 + 3 NA Intergenic Intergenic -224357 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 626-64 chr2 56839713 56840099 + 3 NA Intergenic L1MEd|LINE|L1 -654136 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 480-94 chr16 6480257 6480531 + 3 NA intron (NM_018723, intron 2 of 15) MER58B|DNA|hAT-Charlie -293415 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 495-46 chr12 46930016 46930309 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -104165 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 415-69 chr14 37164348 37164592 + 3 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -7556 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 1094 chr14 57671598 57672263 + 3 NA intron (NM_001352014, intron 1 of 9) LTR16A2|LTR|ERVL -178073 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 410-348 chrX 136501844 136502035 + 3 NA intron (NM_014500, intron 4 of 8) intron (NM_014500, intron 4 of 8) 4347 NM_014500 27336 Hs.204475 NM_014500 ENSG00000102241 HTATSF1 TAT-SF1|TATSF1|dJ196E23.2 HIV-1 Tat specific factor 1 protein-coding 979-7 chr15 61510168 61510595 + 3 NA Intergenic Intergenic -219537 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 566-102 chr2 163306333 163306566 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 429559 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 464-119 chr2 70629707 70630088 + 3 NA Intergenic L2a|LINE|L2 -76071 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 798-50 chr5 53195829 53196325 + 3 NA Intergenic Intergenic 86235 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 250-379 chr6 114539816 114539999 + 3 NA Intergenic Intergenic -477030 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 733-52 chr3 56441024 56441456 + 3 NA intron (NR_132749, intron 1 of 17) MLT1H|LTR|ERVL-MaLR 27227 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 438-42 chr10 126539618 126539823 + 3 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) -18227 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 520-177 chr22 43646400 43646589 + 3 NA intron (NM_198856, intron 15 of 29) intron (NM_198856, intron 15 of 29) 130240 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 378-341 chr5 83296311 83296543 + 3 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -175247 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 515-206 chr5 67846858 67847055 + 3 NA Intergenic L1MB8|LINE|L1 53743 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 851-18 chr19 57421497 57422015 + 3 NA 3' UTR (NM_006959, exon 3 of 3) 3' UTR (NM_006959, exon 3 of 3) 10595 NM_006959 7565 Hs.729403 NM_006959 ENSG00000186272 ZNF17 HPF3|KOX10 zinc finger protein 17 protein-coding 732-55 chr21 14562977 14563373 + 3 NA intron (NM_001256370, intron 2 of 8) intron (NM_001256370, intron 2 of 8) -16815 NM_001286523 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 613-103 chr5 28990727 28991071 + 3 NA Intergenic Intergenic 64029 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 375-256 chr22 43588495 43588741 + 3 NA intron (NM_198856, intron 22 of 29) HAL1|LINE|L1 72364 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 474-5 chr1 59293082 59293338 + 3 NA Intergenic MIRc|SINE|MIR -3603 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 528-43 chr10 123206962 123207179 + 3 NA Intergenic L1M5|LINE|L1 52668 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 396-303 chr5 180274940 180275093 + 3 NA intron (NM_001364608, intron 3 of 12) L1ME3B|LINE|L1 5592 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 423-176 chr3 61089695 61089903 + 3 NA intron (NR_148922, intron 2 of 3) L3|LINE|CR1 161653 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 698-11 chr1 231744015 231744415 + 3 NA intron (NM_001164544, intron 3 of 8) Charlie17a|DNA|hAT-Charlie 74302 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 875-34 chr7 130811010 130811420 + 3 NA Intergenic HAL1ME|LINE|L1 65595 NR_029503 407021 NR_029503 ENSG00000284032 MIR29A MIRN29|MIRN29A|hsa-mir-29|hsa-mir-29a|miRNA29A|mir-29a microRNA 29a ncRNA 293-338 chr5 60642103 60642253 + 3 NA intron (NM_001145208, intron 6 of 9) intron (NM_001145208, intron 6 of 9) 57988 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 477-291 chr8 126134348 126134597 + 3 NA Intergenic MamGypLTR1b|LTR|Gypsy -183275 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 482-300 chr9 105735106 105735472 + 3 NA intron (NM_018112, intron 4 of 5) L1M2a|LINE|L1 40748 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 967-24 chr7 33538690 33539142 + 3 NA intron (NM_001362679, intron 21 of 21) MIR|SINE|MIR -365999 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 536-43 chr11 15044469 15044795 + 3 NA Intergenic Intergenic -28961 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 461-60 chr12 28367766 28367998 + 3 NA intron (NM_001330367, intron 7 of 11) MLT2D|LTR|ERVL -177144 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 547-101 chr2 106660327 106660596 + 3 NA Intergenic Intergenic 173097 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 463-164 chr20 23934314 23934509 + 3 NA Intergenic LOR1-int|LTR|ERV1 52464 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 382-258 chr3 22646245 22646523 + 3 NA Intergenic L1MA1|LINE|L1 556194 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 1033-2 chr12 14474099 14474797 + 3 NA intron (NM_181352, intron 10 of 14) AluSx4|SINE|Alu 89167 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 772-32 chr20 17006195 17006602 + 3 NA Intergenic L1ME3C|LINE|L1 -219709 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 373-264 chr3 117260592 117260751 + 3 NA Intergenic Intergenic 339240 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 438-45 chr11 8117623 8117777 + 3 NA intron (NM_001135109, intron 1 of 1) L1MA8|LINE|L1 36338 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 893-22 chr16 51279871 51280567 + 3 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -128947 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 528-96 chr15 81898087 81898315 + 3 NA Intergenic Intergenic 147817 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 496-88 chr14 70102275 70102531 + 3 NA intron (NM_033262, intron 2 of 7) L1MEf|LINE|L1 -22186 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 480-63 chr13 93017503 93017696 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -27742 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 1141-5 chr16 9348892 9349487 + 3 NA Intergenic L1MA3|LINE|L1 -6399 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 522-140 chr2 107429184 107429520 + 3 NA Intergenic ORSL-2a|DNA|hAT-Tip100 -79827 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 910-29 chr3 96943042 96943359 + 3 NA intron (NM_001080448, intron 2 of 17) L1MA6|LINE|L1 128606 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 791-63 chr6 71078370 71078880 + 3 NA Intergenic L2a|LINE|L2 -121565 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 441-82 chr14 97890133 97890380 + 3 NA Intergenic Intergenic 87868 NR_152748 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 372-255 chr2 128906617 128906795 + 3 NA Intergenic L1M5|LINE|L1 42106 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 501-241 chr7 54591605 54591915 + 3 NA Intergenic Intergenic 34790 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 518-222 chr5 8586254 8586557 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 125480 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 930-29 chr6 137496218 137496718 + 3 NA Intergenic Intergenic -2074 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 426-249 chr5 121599504 121599669 + 3 NA Intergenic L1PA16|LINE|L1 -252296 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 530-74 chr14 57032102 57032286 + 3 NA Intergenic MER20B|DNA|hAT-Charlie 219036 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 684-98 chr5 87989992 87990329 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 278685 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 375-346 chr6 9896739 9896957 + 3 NA Intergenic Intergenic -507654 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 385-324 chr6 45788658 45788829 + 3 NA Intergenic MER94|DNA|hAT-Blackjack 148854 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 496-259 chr7 32134147 32134445 + 3 NA intron (NM_001322059, intron 3 of 17) L1MEf|LINE|L1 -62860 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 1139-3 chr14 38059626 38060270 + 3 NA Intergenic Charlie20a|DNA|hAT-Charlie -147956 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 1231-9 chr9 96754208 96754836 + 3 NA TTS (NM_014930) TTS (NM_014930) 23565 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 507-53 chr11 59304775 59305049 + 3 NA Intergenic L1M2|LINE|L1 -59547 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 954-17 chr18 42140151 42140602 + 3 NA Intergenic L1PA16|LINE|L1 -46292 NR_046456 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 817-26 chr2 100320090 100320559 + 3 NA intron (NM_198461, intron 1 of 11) intron (NM_198461, intron 1 of 11) 2409 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 606-33 chr12 4000090 4000482 + 3 NA Intergenic Intergenic -126838 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 573-74 chr17 27894912 27895154 + 3 NA Intergenic Intergenic -1668 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 487-135 chr2 34022009 34022188 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -45128 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 979-19 chr7 80735638 80736330 + 3 NA Intergenic L1PA15|LINE|L1 89331 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 613-53 chr2 34884439 34884761 + 3 NA Intergenic L1MCc|LINE|L1 207043 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 687-62 chr2 107481436 107481702 + 3 NA Intergenic L1MEf|LINE|L1 -47850 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 566-144 chr4 66427270 66427627 + 3 NA Intergenic L1M1|LINE|L1 150624 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 506-220 chr5 5759769 5760026 + 3 NA Intergenic (ATATGT)n|Simple_repeat|Simple_repeat 337220 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 349-75 chr10 81695500 81695658 + 3 NA Intergenic Intergenic -179615 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 491-266 chr8 116893271 116893438 + 3 NA Intergenic Intergenic -18488 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 630-139 chr8 115777524 115777796 + 3 NA Intergenic Intergenic -108685 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 1495-4 chr19 52477121 52477991 + 3 NA intron (NM_001366182, intron 3 of 5) HERVK3-int|LTR|ERVK 24003 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 961-15 chr4 175594180 175594587 + 3 NA Intergenic AluJo|SINE|Alu 193293 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 558-171 chr5 33272370 33272650 + 3 NA Intergenic Intergenic 42775 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 421-57 chr12 114033312 114033566 + 3 NA Intergenic Intergenic -67114 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 316-466 chr5 155106562 155106703 + 3 NA Intergenic Intergenic 92877 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 271-262 chr3 36899659 36899791 + 3 NA intron (NM_001329998, intron 3 of 23) intron (NM_001329998, intron 3 of 23) 45329 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 592-185 chr9 105562955 105563265 + 3 NA intron (NM_001351498, intron 1 of 9) intron (NM_001351498, intron 1 of 9) 4979 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 324-461 chr6 51576397 51576596 + 3 NA Intergenic L1PA16|LINE|L1 -45374 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 407-242 chr5 23243515 23243690 + 3 NA Intergenic Intergenic -264007 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 557-209 chr8 134147950 134148221 + 3 NA Intergenic MIRc|SINE|MIR 261589 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 663-50 chr19 13475528 13475873 + 3 NA intron (NM_023035, intron 1 of 46) MIRc|SINE|MIR 30760 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 358-155 chr17 6112659 6112892 + 3 NA intron (NM_015253, intron 7 of 8) L1MA5|LINE|L1 42161 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 488-200 chr4 160489657 160489854 + 3 NA Intergenic MER41-int|LTR|ERV1 -711971 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 356-507 chr9 99280470 99280626 + 3 NA Intergenic Intergenic 58266 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - SEC61 translocon beta subunit protein-coding 399-24 chr1 225167051 225167248 + 3 NA intron (NM_001367479, intron 35 of 85) intron (NM_001367479, intron 35 of 85) 237474 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 430-286 chr7 48828179 48828421 + 3 NA Intergenic Intergenic -96247 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 554-134 chr20 24181124 24181457 + 3 NA Intergenic Intergenic -18477 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 424-252 chr7 4909225 4909404 + 3 NA intron (NR_072989, intron 7 of 8) FLAM_C|SINE|Alu -25598 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 640-88 chr3 191167026 191167377 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -32040 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 346-361 chr4 121915940 121916105 + 3 NA intron (NM_001130698, intron 3 of 11) intron (NM_001130698, intron 3 of 11) 17091 NM_003305 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 728-85 chr7 13479682 13480112 + 3 NA Intergenic Intergenic 506617 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 218-215 chr3 78185059 78185196 + 3 NA Intergenic Intergenic -136164 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 505-244 chr5 86452018 86452252 + 3 NA Intergenic Intergenic -165806 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 729-78 chr8 100368727 100369228 + 3 NA Intergenic L1ME4b|LINE|L1 -13786 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 524-158 chr3 161462830 161463016 + 3 NA Intergenic L1M2|LINE|L1 -33885 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 481-177 chr20 44160771 44161025 + 3 NA intron (NM_020433, intron 1 of 5) AluJb|SINE|Alu 26290 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 441-251 chr7 78555875 78556061 + 3 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 208726 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 445-61 chr13 97484105 97484321 + 3 NA Intergenic Intergenic 50044 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 492-86 chr14 56213121 56213358 + 3 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 94828 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 504-249 chr8 5759109 5759403 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 647292 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 735-49 chr2 223467320 223467694 + 3 NA Intergenic L1M5|LINE|L1 134854 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 323-206 chr18 69076362 69076568 + 3 NA Intergenic L1M5|LINE|L1 278385 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 667-131 chrX 66830974 66831395 + 3 NA Intergenic L1M1|LINE|L1 -191886 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 509-23 chr10 43557884 43558131 + 3 NA exon (NM_001099284, exon 3 of 3) exon (NM_001099284, exon 3 of 3) 10452 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 687-9 chr1 227384088 227384554 + 3 NA Intergenic L1MC1|LINE|L1 -65829 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 900-15 chr18 13353995 13354424 + 3 NA intron (NM_181482, intron 2 of 5) FAM|SINE|Alu 73325 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 489-268 chr9 71267293 71267498 + 3 NA intron (NM_001366143, intron 1 of 25) L2c|LINE|L2 -145774 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 676-55 chr2 49364051 49364498 + 3 NA Intergenic L1MEf|LINE|L1 -209747 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 477-187 chr22 41277354 41277662 + 3 NA intron (NM_001317930, intron 2 of 15) intron (NM_001317930, intron 2 of 15) 8679 NM_001278651 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 948-15 chr16 78724347 78724752 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 624895 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 490-139 chr2 57239196 57239479 + 3 NA Intergenic L1MA8|LINE|L1 -668314 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 438-218 chr5 57579684 57579946 + 3 NA intron (NR_120607, intron 4 of 5) L1PA17|LINE|L1 9473 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 678-104 chr8 102189268 102189657 + 3 NA Intergenic Intergenic 49369 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 556-218 chr8 69292192 69292517 + 3 NA Intergenic MER77|LTR|ERVL 155890 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 541-129 chr2 156770592 156771057 + 3 NA Intergenic L1M4|LINE|L1 334445 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 512-54 chr11 107105531 107105861 + 3 NA Intergenic L1PB3|LINE|L1 -87220 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 491-98 chr18 7485414 7485771 + 3 NA Intergenic AluSc5|SINE|Alu -24586 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 373-109 chr14 53471060 53471238 + 3 NA Intergenic L3b|LINE|CR1 317795 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 207-59 chr11 112651631 112651709 + 3 NA Intergenic Intergenic -95868 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 518-247 chr5 166677404 166677690 + 3 NA Intergenic Intergenic 248823 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 390-20 chr1 185013848 185014183 + 3 NA Intergenic Intergenic 12488 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 308-6 chr1 31091192 31091309 + 3 NA Intergenic AluSg|SINE|Alu -25533 NM_001020658 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 541-19 chr10 62299241 62299443 + 3 NA Intergenic L2a|LINE|L2 -30498 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 430-176 chr21 7925737 7925888 + 3 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -96180 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 366-173 chr18 12908865 12909019 + 3 NA Intergenic Intergenic -24607 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 520-335 chrX 88672262 88672576 + 3 NA Intergenic Intergenic -74806 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 476-120 chr18 53289069 53289250 + 3 NA intron (NM_005215, intron 12 of 28) intron (NM_005215, intron 12 of 28) 52058 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 387-224 chr3 76638300 76638599 + 3 NA Intergenic Intergenic -401650 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 659-33 chr14 65651796 65652198 + 3 NA intron (NM_004480, intron 5 of 9) MLT1C|LTR|ERVL-MaLR 180895 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 576-80 chr2 43007858 43008186 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 31521 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 1076-11 chr2 42413436 42414040 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -44781 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 603-117 chr4 32608584 32608858 + 3 NA Intergenic L1M4|LINE|L1 257683 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 337-513 chr7 34492114 34492274 + 3 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -166024 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 577-138 chr4 157341542 157341826 + 3 NA intron (NM_001083620, intron 12 of 15) intron (NM_001083620, intron 12 of 15) 120956 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 580-166 chr6 100039488 100039781 + 3 NA intron (NR_038384, intron 2 of 2) THE1C-int|LTR|ERVL-MaLR -45396 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 403-220 chr4 58526938 58527226 + 3 NA intron (NR_133943, intron 2 of 2) MLT2D|LTR|ERVL 9246 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 507-240 chr8 46885994 46886227 + 3 NA Intergenic BSR/Beta|Satellite|Satellite 45224 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 414-53 chr11 105372668 105372918 + 3 NA Intergenic Intergenic -233024 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 713-26 chr15 57798691 57799023 + 3 NA Intergenic Intergenic 92143 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 379-342 chr8 85021502 85021689 + 3 NA Intergenic Intergenic -85643 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 1165-8 chr2 168795446 168795953 + 3 NA intron (NM_001171631, intron 2 of 20) intron (NM_001171631, intron 2 of 20) -6891 NM_001039724 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 559-158 chr6 66256257 66256512 + 3 NA Intergenic L1MA3|LINE|L1 468505 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 585-46 chr14 84264259 84264674 + 3 NA Intergenic Intergenic -1007466 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 830-55 chr8 117060601 117060962 + 3 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -74214 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 464-168 chr3 112228949 112229165 + 3 NA intron (NM_001320531, intron 12 of 27).2 L1MA5|LINE|L1 65159 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 337-507 chr6 154118248 154118401 + 3 NA intron (NR_104348, intron 4 of 4) intron (NR_104348, intron 4 of 4) 28562 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 662-72 chr5 25284766 25285118 + 3 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 93989 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 744-46 chr3 187951129 187951631 + 3 NA Intergenic Intergenic 25027 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 468-282 chr6 92435805 92436107 + 3 NA Intergenic Intergenic -745528 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 636-8 chr1 170851891 170852219 + 3 NA Intergenic Intergenic -83416 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 497-140 chr2 180147656 180147936 + 3 NA Intergenic Intergenic -140499 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 453-141 chr20 11826108 11826288 + 3 NA intron (NR_110635, intron 1 of 1) intron (NR_110635, intron 1 of 1) 44517 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 384-125 chr15 80637699 80637947 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 56720 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 589-57 chr19 37625240 37625522 + 3 NA Intergenic L1M2|LINE|L1 30084 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 555-98 chr2 113021987 113022278 + 3 NA TTS (NM_014438) TTS (NM_014438) 16673 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 201-11 chr1 147176521 147176607 + 3 NA intron (NM_001348451, intron 2 of 23) intron (NM_001348451, intron 2 of 23) -1287 NR_002305 171423 Hs.658566 NR_002305 PDIA3P1 ERp60|GRP58P|PDIA3P protein disulfide isomerase family A member 3 pseudogene 1 pseudo 577-63 chr15 24801434 24801732 + 3 NA Intergenic L1MC3|LINE|L1 -22025 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 251-325 chr6 4452798 4452913 + 3 NA Intergenic Intergenic -35943 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 1105-10 chr2 221645962 221646566 + 3 NA Intergenic Intergenic -72062 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 437-228 chr5 111655683 111655927 + 3 NA intron (NR_040093, intron 1 of 6) MIR|SINE|MIR 100446 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 397-298 chr7 25719554 25719694 + 3 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 31408 NR_157815 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 623-33 chr13 109463031 109463371 + 3 NA Intergenic L1MA7|LINE|L1 62505 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 731-44 chr3 29019712 29020134 + 3 NA Intergenic Intergenic 261016 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 337-565 chr8 135440847 135441057 + 3 NA Intergenic Intergenic -16504 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 297-482 chr8 106941650 106941826 + 3 NA Intergenic Intergenic -171494 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 390-262 chr4 41598952 41599098 + 3 NA exon (NM_001330792, exon 4 of 25) exon (NM_001330792, exon 4 of 25) -13684 NM_001330674 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 527-192 chr4 74045703 74046000 + 3 NA Intergenic L1MA4A|LINE|L1 -7162 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 981-12 chr19 56561942 56562488 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -5253 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 622-108 chr5 104498006 104498370 + 3 NA Intergenic Intergenic -601286 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 405-309 chr7 111961699 111961867 + 3 NA intron (NM_001363540, intron 8 of 52) intron (NM_001363540, intron 8 of 52) 153278 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 1050-3 chr10 94650593 94651168 + 3 NA Intergenic MLT2A2|LTR|ERVL -32849 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 514-250 chr6 62514040 62514374 + 3 NA Intergenic Intergenic -227980 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 587-3 chr1 49249012 49249374 + 3 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -8218 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 469-290 chr8 127233379 127233634 + 3 NA Intergenic MIR|SINE|MIR -11131 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 627-18 chr11 55027093 55027365 + 3 NA Intergenic ALR/Alpha|Satellite|centr -234926 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 744-72 chr8 38074339 38074697 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -30975 NM_001282272 9070 Hs.521530 NM_004674 ENSG00000129691 ASH2L ASH2|ASH2L1|ASH2L2|Bre2 ASH2 like, histone lysine methyltransferase complex subunit protein-coding 634-43 chr12 41815014 41815434 + 3 NA Intergenic Intergenic 51035 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 531-127 chr2 199171253 199171563 + 3 NA Intergenic L1M5|LINE|L1 286531 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 404-186 chr2 225636170 225636341 + 3 NA intron (NM_001371273, intron 6 of 7) L2b|LINE|L2 235369 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 721-24 chr17 41472262 41472660 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -5075 NM_002278 3882 Hs.41752 NM_002278 ENSG00000108759 KRT32 HA2|HKA2|KRTHA2|hHa2 keratin 32 protein-coding 415-126 chr2 77465340 77465503 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 56955 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 457-4 chr1 42599745 42599933 + 3 NA intron (NM_001080850, intron 10 of 16) MSTA|LTR|ERVL-MaLR -58584 NM_006347 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 520-230 chr5 35959499 35959797 + 3 NA intron (NM_152404, intron 4 of 6) L1MB4|LINE|L1 20847 NR_104630 100506406 Hs.116864 NR_104630 ENSG00000249748 LOC100506406 - uncharacterized LOC100506406 ncRNA 429-278 chr7 77438658 77438930 + 3 NA Intergenic L1MA10|LINE|L1 -22445 NM_001350899 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 445-209 chr4 140070383 140070561 + 3 NA intron (NM_018717, intron 1 of 4) intron (NM_018717, intron 1 of 4) -57543 NR_147610 101927516 Hs.662570 NR_147610 LOC101927516 - uncharacterized LOC101927516 ncRNA 691-46 chr20 4502379 4502898 + 3 NA Intergenic Intergenic -183818 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 282-418 chr7 25524014 25524222 + 3 NA Intergenic L2a|LINE|L2 139022 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 372-244 chr2 103655167 103655353 + 3 NA Intergenic Intergenic -670831 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 563 chr1 14300729 14301007 + 3 NA Intergenic Intergenic 119105 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 771-39 chr2 13687637 13688088 + 3 NA Intergenic MER57-int|LTR|ERV1 -680849 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 385-114 chr15 67878359 67878549 + 3 NA Intergenic AluJb|SINE|Alu -38409 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 618-131 chr8 85282589 85283022 + 3 NA 3' UTR (NM_198584, exon 7 of 7) 3' UTR (NM_198584, exon 7 of 7) 37347 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 446-114 chr16 47293882 47294139 + 3 NA intron (NM_030790, intron 10 of 17) L1PB4|LINE|L1 149942 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 379-61 chr11 86735925 86736143 + 3 NA Intergenic Intergenic -55037 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 499-116 chr2 41272379 41272598 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -605067 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 920-23 chr6 134566701 134567270 + 3 NA Intergenic Intergenic -26980 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 674-111 chrX 93183813 93184267 + 3 NA Intergenic L1M5|LINE|L1 -359137 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 665-103 chr8 43799018 43799368 + 3 NA Intergenic ALR/Alpha|Satellite|centr 506751 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 292-359 chr5 124005186 124005300 + 3 NA Intergenic Intergenic 433277 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 663-2 chr1 34500681 34501061 + 3 NA Intergenic Intergenic 168823 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 460-26 chr10 19851050 19851251 + 3 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 34718 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 397-82 chr14 47198875 47199102 + 3 NA intron (NM_001113498, intron 3 of 16) MLT2C2|LTR|ERVL 144258 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 665-106 chr8 74072967 74073214 + 3 NA Intergenic MLT2F|LTR|ERVL 81698 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 829-11 chr10 130508085 130508511 + 3 NA Intergenic Intergenic 371889 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 594-71 chr2 115701571 115701952 + 3 NA intron (NM_001321912, intron 8 of 25) L1M4c|LINE|L1 357946 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 341-112 chr12 39685121 39685321 + 3 NA intron (NM_001031748, intron 10 of 12) MSTA|LTR|ERVL-MaLR 59038 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 493-272 chr7 28856935 28857157 + 3 NA Intergenic L2b|LINE|L2 101284 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 595-78 chr2 36473368 36473779 + 3 NA intron (NM_016441, intron 5 of 16) L1MB7|LINE|L1 117795 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 707-69 chr3 98947278 98947746 + 3 NA Intergenic Intergenic -45817 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 465-245 chr5 162023481 162023757 + 3 NA Intergenic L1MA1|LINE|L1 -22423 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 411-68 chr12 18010251 18010453 + 3 NA Intergenic L1MEc|LINE|L1 79841 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 469-276 chr8 51283929 51284160 + 3 NA Intergenic Intergenic 525401 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 400-182 chr2 180533021 180533195 + 3 NA Intergenic Intergenic -158996 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 378-104 chr12 41472191 41472409 + 3 NA intron (NM_013377, intron 1 of 7) AluSp|SINE|Alu 34561 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 761-25 chr2 141991548 141991920 + 3 NA intron (NM_018557, intron 1 of 90) MIRb|SINE|MIR 139967 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 279-223 chr20 45973319 45973469 + 3 NA Intergenic Intergenic -1191 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 839-46 chr7 86752221 86752703 + 3 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 108548 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 721-50 chr21 31207855 31208263 + 3 NA intron (NM_001353686, intron 11 of 27) intron (NM_001353686, intron 11 of 27) -47119 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 514-139 chr2 41881536 41881729 + 3 NA intron (NR_033996, intron 1 of 2) intron (NR_033996, intron 1 of 2) 4077 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 548-143 chr3 25928238 25928461 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -54654 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 564-22 chr10 117034011 117034344 + 3 NA intron (NM_001258300, intron 2 of 17) L1MA2|LINE|L1 -28600 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 590-76 chr2 28097958 28098233 + 3 NA intron (NM_199193, intron 7 of 13) L1MD|LINE|L1 101728 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 616-180 chr9 36250230 36250461 + 3 NA intron (NM_001128227, intron 1 of 11) intron (NM_001128227, intron 1 of 11) 8103 NM_005476 10020 Hs.5920 NM_005476 ENSG00000159921 GNE DMRV|GLCNE|IBM2|NM|Uae1 glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase protein-coding 1082-14 chr8 46505145 46505871 + 3 NA Intergenic ALR/Alpha|Satellite|centr 112135 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 580-163 chr6 74014784 74015127 + 3 NA Intergenic MADE1|DNA|TcMar-Mariner -54496 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 984-13 chr6 48384243 48384771 + 3 NA Intergenic L1PB2|LINE|L1 -315818 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 400-245 chr4 54505610 54505838 + 3 NA Intergenic L1ME1|LINE|L1 101407 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 181-4 chr1 65915340 65915403 + 3 NA intron (NM_001297441, intron 2 of 15) intron (NM_001297441, intron 2 of 15) 2126 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 581-94 chr21 44617585 44617796 + 3 NA intron (NM_144991, intron 1 of 11) intron (NM_144991, intron 1 of 11) 5611 NM_198695 386681 Hs.528021 NM_198695 ENSG00000187766 KRTAP10-8 KAP10.8|KRTAP18-8|KRTAP18.8 keratin associated protein 10-8 protein-coding 624-54 chr18 4951839 4952094 + 3 NA Intergenic Intergenic -129216 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 711-26 chr16 35132496 35132948 + 3 NA Intergenic Intergenic 37669 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 1111-2 chr11 29686334 29687061 + 3 NA Intergenic MIR|SINE|MIR 67895 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 391-334 chr7 153546230 153546506 + 3 NA Intergenic L1M5|LINE|L1 -134134 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 232-135 chr17 69872164 69872296 + 3 NA intron (NR_109972, intron 4 of 4) L2c|LINE|L2 -89477 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 640-45 chr16 73454828 73455156 + 3 NA Intergenic Intergenic 68187 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 412-99 chr15 49785904 49786193 + 3 NA Intergenic L1MC1|LINE|L1 165000 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 1359-6 chrX 58449632 58450341 + 3 NA Intergenic ALR/Alpha|Satellite|centr -539353 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 468-154 chr2 116729263 116729559 + 3 NA Intergenic Intergenic -1085280 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 697-80 chr9 92861881 92862215 + 3 NA intron (NM_001007101, intron 1 of 3) L1MEf|LINE|L1 15920 NM_001354536 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 370-128 chr13 41821180 41821406 + 3 NA intron (NM_001009814, intron 14 of 25) intron (NM_001009814, intron 14 of 25) 139792 NM_001009814 23078 Hs.368282 NM_015058 ENSG00000102763 VWA8 KIAA0564|P7BP2 von Willebrand factor A domain containing 8 protein-coding 1161-6 chr3 122583285 122583799 + 3 NA intron (NM_001113523, intron 1 of 11) L1MEc|LINE|L1 5892 NM_001308320 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 191-29 chr11 28190870 28190963 + 3 NA intron (NM_001113528, intron 3 of 6) intron (NM_001113528, intron 3 of 6) 82528 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 397-350 chr9 11139469 11139622 + 3 NA Intergenic Intergenic 526339 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 1014-13 chr2 148408711 148409198 + 3 NA intron (NM_018328, intron 5 of 14) MER2|DNA|TcMar-Tigger -235797 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 593-113 chr5 2809810 2810192 + 3 NA Intergenic AluSq2|SINE|Alu 57870 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 658-111 chr6 124315618 124315971 + 3 NA intron (NM_001040214, intron 2 of 6) intron (NM_001040214, intron 2 of 6) 32789 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 353-93 chr11 98982834 98983023 + 3 NA Intergenic L1MDa|LINE|L1 -38021 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 488-293 chr9 87356808 87357109 + 3 NA Intergenic L1ME1|LINE|L1 -140270 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 684-18 chr10 111412390 111412639 + 3 NA Intergenic L1MC3|LINE|L1 298223 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 238-55 chr10 119717610 119717723 + 3 NA Intergenic Intergenic -8381 NM_001243195 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 544-105 chr2 7473738 7473942 + 3 NA Intergenic Intergenic 52579 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 230-66 chr11 99450302 99450423 + 3 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -105783 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 513-183 chr3 78029124 78029311 + 3 NA Intergenic Intergenic 19746 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 863-18 chr2 41084925 41085435 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -572745 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 738 chr1 45093049 45093449 + 3 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 80995 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 986-25 chr4 66022876 66023410 + 3 NA Intergenic L1PA15|LINE|L1 -253681 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 535-12 chr1 80604534 80604821 + 3 NA intron (NR_125940, intron 2 of 3) LTR24C|LTR|ERV1 -36610 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 623 chr1 15677253 15677530 + 3 NA Intergenic LTR19B|LTR|ERV1 -6929 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology and RUN domain containing M2 protein-coding 305-16 chr1 82086542 82086660 + 3 NA Intergenic Intergenic 284148 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 279-225 chr20 57756777 57756969 + 3 NA Intergenic Intergenic -45337 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 615-55 chr18 72659091 72659542 + 3 NA Intergenic Intergenic -114974 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 1435 chr10 31304919 31305438 + 3 NA Intergenic Intergenic -13239 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 552-183 chr5 167691929 167692124 + 3 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -62903 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 669-48 chr2 49400256 49400596 + 3 NA Intergenic Intergenic -245899 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 484-225 chr5 136385527 136385755 + 3 NA Intergenic Intergenic -20165 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 475-227 chr5 66908127 66908301 + 3 NA intron (NM_001164664, intron 4 of 28) intron (NM_001164664, intron 4 of 28) -50859 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 297-128 chr14 44030521 44030640 + 3 NA Intergenic L1MEg|LINE|L1 476703 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 403-73 chr12 38568238 38568458 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 251574 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 505-263 chr6 27401780 27401973 + 3 NA 3' UTR (NM_001322289, exon 4 of 4) 3' UTR (NM_001322289, exon 4 of 4) 13158 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 579-3 chr1 117208766 117209025 + 3 NA intron (NM_024626, intron 1 of 5) intron (NM_024626, intron 1 of 5) 2032 NM_024626 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 538-123 chr2 125984448 125984627 + 3 NA Intergenic MIRb|SINE|MIR 133448 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 789-47 chr8 90710942 90711460 + 3 NA Intergenic Intergenic -65118 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 363-191 chr19 13616585 13616779 + 3 NA Intergenic L2a|LINE|L2 -110203 NM_023035 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 517-227 chr5 164378403 164378697 + 3 NA Intergenic L1MA6|LINE|L1 88852 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 814-46 chr4 105303448 105303977 + 3 NA intron (NR_126420, intron 2 of 5) L1M4|LINE|L1 49169 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 773-32 chr4 88628429 88628812 + 3 NA intron (NM_001318505, intron 3 of 8) intron (NM_001318505, intron 3 of 8) 36140 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 177-30 chr11 28105499 28105603 + 3 NA intron (NM_031217, intron 1 of 16) L1MA9|LINE|L1 2605 NM_031217 81930 Hs.301052 NM_031217 ENSG00000121621 KIF18A MS-KIF18A|PPP1R99 kinesin family member 18A protein-coding 480-165 chr2 211187894 211188152 + 3 NA Intergenic HAL1|LINE|L1 570452 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 483-152 chr22 26253450 26253770 + 3 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 84136 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 512-162 chr3 34170769 34171089 + 3 NA Intergenic Intergenic 372299 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 505-78 chr14 47835680 47835883 + 3 NA Intergenic Intergenic -40767 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 625-49 chr2 88117680 88118096 + 3 NA Intergenic L2|LINE|L2 10174 NM_001443 2168 Hs.380135 NM_001443 ENSG00000163586 FABP1 FABPL|L-FABP fatty acid binding protein 1 protein-coding 602-31 chr14 58916977 58917392 + 3 NA intron (NR_110547, intron 3 of 5) LTR89|LTR|ERVL? 88896 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 223-66 chr12 43421702 43421800 + 3 NA intron (NM_025003, intron 28 of 38) intron (NM_025003, intron 28 of 38) 130452 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 745-81 chr9 28342786 28343170 + 3 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 376327 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 634-82 chr2 154077359 154077601 + 3 NA intron (NM_052917, intron 3 of 12) L1M4|LINE|L1 133086 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 627-35 chr15 70614239 70614552 + 3 NA Intergenic MamGypLTR1c|LTR|Gypsy -1152 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 1293-2 chr1 237324229 237324977 + 3 NA intron (NM_001035, intron 2 of 104) intron (NM_001035, intron 2 of 104) -146516 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 478-81 chr14 68204928 68205151 + 3 NA intron (NM_133509, intron 7 of 10) L1ME4a|LINE|L1 381447 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 232-334 chr6 135764886 135765004 + 3 NA Intergenic L1ME1|LINE|L1 -86756 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 277-289 chr4 70625919 70626074 + 3 NA Intergenic Intergenic -2748 NM_031889 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 639-18 chr10 123649561 123649950 + 3 NA Intergenic Intergenic -16600 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 853-47 chr9 80463708 80464082 + 3 NA Intergenic L2c|LINE|L2 488872 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1124-12 chr7 53992704 53993489 + 3 NA Intergenic Intergenic -181165 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 459-84 chr14 73845134 73845341 + 3 NA Intergenic AluJb|SINE|Alu -6594 NM_001371335 870-24 chr4 18940611 18941090 + 3 NA Intergenic Intergenic -918975 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 250-232 chr2 204557929 204558036 + 3 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 12507 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 521-70 chr12 114106042 114106421 + 3 NA Intergenic Intergenic 135539 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 455-209 chr5 15728083 15728319 + 3 NA intron (NM_001278317, intron 2 of 3) L1M4c|LINE|L1 -113199 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 520-101 chr15 91781753 91782082 + 3 NA Intergenic Intergenic -71791 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 459-224 chr4 137877958 137878257 + 3 NA Intergenic Intergenic -210907 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 413-235 chr5 32747284 32747614 + 3 NA intron (NM_001364460, intron 2 of 6) HAL1|LINE|L1 36128 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 399-166 chr2 142559894 142560108 + 3 NA Intergenic Intergenic -317663 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 655-105 chr6 49318716 49319062 + 3 NA Intergenic L1MA8|LINE|L1 144364 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 451-70 chr14 65608682 65608898 + 3 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 137688 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 403-180 chr20 55425757 55425954 + 3 NA intron (NR_110064, intron 1 of 2) MIR|SINE|MIR 1342 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 866-32 chr4 62536705 62537445 + 3 NA Intergenic Intergenic -375310 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 583-87 chr2 59469303 59469612 + 3 NA Intergenic L1ME1|LINE|L1 251749 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 613-122 chr7 35365387 35365658 + 3 NA intron (NR_038864, intron 2 of 2) intron (NR_038864, intron 2 of 2) 51667 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 976-26 chr9 95431181 95431660 + 3 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -32189 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 585-9 chr1 194034429 194034864 + 3 NA Intergenic Intergenic 729901 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 659-84 chr4 79683471 79684025 + 3 NA Intergenic Intergenic -143723 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 344-387 chr5 61949316 61949482 + 3 NA Intergenic Intergenic -213701 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 601-76 chr2 79294639 79295002 + 3 NA Intergenic Intergenic -135067 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 1603-2 chr21 20239687 20240523 + 3 NA Intergenic L1MA5|LINE|L1 18580 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 558-37 chr11 102991949 102992264 + 3 NA Intergenic L2c|LINE|L2 -36374 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 421-143 chr2 103380743 103380893 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -396389 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 409-56 chr12 65524871 65525127 + 3 NA intron (NR_120431, intron 2 of 3) intron (NR_120431, intron 2 of 3) 32312 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 307-527 chrX 2910155 2910287 + 3 NA intron (NM_001669, intron 7 of 9) intron (NM_001669, intron 7 of 9) 5317 NR_144459 100506356 Hs.528631 NR_144459 ENSG00000229851 ARSD-AS1 - ARSD antisense RNA 1 ncRNA 951-3 chr10 29185088 29185589 + 3 NA Intergenic MER57A1|LTR|ERV1 -103732 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 455-211 chr5 20117421 20117621 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -129321 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 460-226 chr4 134134143 134134317 + 3 NA Intergenic Intergenic 67559 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 767-41 chr5 166237191 166237642 + 3 NA Intergenic L1MB3|LINE|L1 688954 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 714-40 chr2 171650559 171651004 + 3 NA Intergenic L1MA3|LINE|L1 -36688 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 667-76 chr4 59395104 59395526 + 3 NA Intergenic L1M4|LINE|L1 381742 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 410-84 chr14 70219824 70220010 + 3 NA intron (NR_135825, intron 2 of 3) AluJr|SINE|Alu 27884 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 491-187 chr4 97194464 97194700 + 3 NA Intergenic Intergenic -172344 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 431-42 chr10 61012134 61012388 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -4014 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 500-62 chr12 13413086 13413352 + 3 NA Intergenic L1MA4|LINE|L1 -36474 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 710-5 chr1 207366932 207367283 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 45429 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 437-63 chr13 71259661 71259870 + 3 NA Intergenic Intergenic 244624 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 670-15 chr10 78875286 78875633 + 3 NA Intergenic Intergenic 191989 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 550-74 chr14 68267712 68268090 + 3 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 360886 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 458-206 chr5 94977267 94977560 + 3 NA intron (NM_001297777, intron 2 of 19) L1MB1|LINE|L1 104453 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 950-5 chr1 209560141 209560673 + 3 NA Intergenic Intergenic -23307 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 250-3 chr1 59616998 59617148 + 3 NA intron (NM_001350794, intron 9 of 14) intron (NM_001350794, intron 9 of 14) 101443 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 564-9 chr1 238075328 238075760 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -184622 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 217-55 chr11 7236801 7236913 + 3 NA Intergenic Intergenic 2091 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 552-85 chr17 56731357 56731726 + 3 NA Intergenic Intergenic 102379 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 383-378 chr8 73861298 73861507 + 3 NA intron (NR_073119, intron 1 of 5) intron (NR_073119, intron 1 of 5) 17460 NR_073120 55284 Hs.128841 NM_018299 ENSG00000104343 UBE2W UBC-16|UBC16 ubiquitin conjugating enzyme E2 W protein-coding 368-149 chr14 72083032 72083211 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 149594 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 625-10 chr10 39405580 39405964 + 3 NA Intergenic ALR/Alpha|Satellite|centr 709176 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 666-25 chr13 91225661 91226040 + 3 NA Intergenic HERVL40-int|LTR|ERVL -14152 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 864-31 chr5 4234219 4234752 + 3 NA Intergenic HAL1|LINE|L1 -538996 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 467-13 chr1 167135157 167135350 + 3 NA Intergenic L2a|LINE|L2 41178 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27, atypical protein-coding 381-297 chr5 18225494 18225662 + 3 NA Intergenic L1MC3|LINE|L1 418304 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 575-122 chr3 105946762 105947090 + 3 NA Intergenic L3|LINE|CR1 -77525 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 567-126 chr4 24366918 24367299 + 3 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 105797 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 314-356 chr22 48934973 48935239 + 3 NA Intergenic L1MB8|LINE|L1 68336 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 438-121 chr2 67980346 67980532 + 3 NA Intergenic HAL1|LINE|L1 82565 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 444-197 chr5 73846968 73847146 + 3 NA intron (NM_001177693, intron 12 of 35) intron (NM_001177693, intron 12 of 35) 33511 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 1060-24 chr7 110652915 110653655 + 3 NA Intergenic Intergenic -437721 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 391-116 chr15 27838219 27838402 + 3 NA intron (NM_001300984, intron 22 of 22) L1MD1|LINE|L1 261005 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 590-6 chr1 73483655 73483934 + 3 NA Intergenic Intergenic 177624 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 390-396 chr8 127516006 127516229 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity -33978 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 495-266 chr8 138004849 138005109 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 78566 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 469-89 chr15 33793982 33794153 + 3 NA intron (NM_001243996, intron 67 of 102) (TA)n|Simple_repeat|Simple_repeat -174430 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 569-63 chr15 59604977 59605280 + 3 NA Intergenic MER57B2|LTR|ERV1 -6655 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 462-204 chr4 62424320 62424624 + 3 NA Intergenic MLT2A2|LTR|ERVL -262707 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 341-485 chr7 15287692 15287935 + 3 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 274202 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 243-375 chr5 171931084 171931268 + 3 NA intron (NM_033644, intron 1 of 12) L1MC1|LINE|L1 75697 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 611-10 chr10 15955943 15956235 + 3 NA Intergenic L1M4|LINE|L1 -95556 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 543-14 chr1 147880273 147880505 + 3 NA Intergenic L1ME1|LINE|L1 -22406 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 416-139 chr17 35461376 35461565 + 3 NA Intergenic Intergenic -12704 NM_144682 146857 Hs.462833 NM_144682 ENSG00000154760 SLFN13 SLFN10|hSLFN13 schlafen family member 13 protein-coding 918-5 chr11 30060810 30061353 + 3 NA Intergenic L1MB7|LINE|L1 -44051 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 703-86 chr7 45903523 45903971 + 3 NA Intergenic L1MB8|LINE|L1 15259 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 405-267 chr5 166991755 166991977 + 3 NA Intergenic Intergenic -65496 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 500-97 chr15 56366096 56366366 + 3 NA intron (NM_001286449, intron 2 of 12) L2a|LINE|L2 807 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 446-225 chr4 150122087 150122308 + 3 NA intron (NM_001040260, intron 2 of 15) Tigger1|DNA|TcMar-Tigger 43752 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 717-37 chr19 36564403 36564886 + 3 NA intron (NM_001145650, intron 2 of 4) L1PA16|LINE|L1 -8426 NR_110703 101927599 Hs.515376 NR_110703 ENSG00000233527 ZNF529-AS1 - ZNF529 antisense RNA 1 ncRNA 647-76 chr4 145516217 145516566 + 3 NA intron (NM_005900, intron 2 of 6) intron (NM_005900, intron 2 of 6) 803 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 488-53 chr11 97641613 97641794 + 3 NA Intergenic L1MEc|LINE|L1 1133278 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 513-51 chr11 96474166 96474504 + 3 NA intron (NR_047481, intron 1 of 4) L1MA4A|LINE|L1 32542 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 429-33 chr10 43539183 43539364 + 3 NA Intergenic AluSx|SINE|Alu 29186 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 395-57 chr11 83192439 83192733 + 3 NA intron (NR_149011, intron 2 of 3) MIRb|SINE|MIR 1083 NR_149011 100506282 Hs.585502 NM_018705 LOC100506282 - uncharacterized LOC100506282 ncRNA 291-37 chr10 8714793 8714953 + 3 NA Intergenic MIRb|SINE|MIR -120482 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 691-44 chr2 104288771 104289218 + 3 NA Intergenic Intergenic 119338 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 1037-10 chr22 49405940 49406591 + 3 NA Intergenic MIR|SINE|MIR 137201 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 516-122 chr2 56930748 56931066 + 3 NA Intergenic Intergenic -745137 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 383-224 chr20 48159546 48159712 + 3 NA Intergenic Intergenic -169512 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 457-107 chr2 18933417 18933636 + 3 NA Intergenic Intergenic 93445 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 262-25 chr1 211864145 211864262 + 3 NA Intergenic L1MC1|LINE|L1 33242 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 314-60 chr10 29005462 29005713 + 3 NA Intergenic Intergenic 159179 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 411-103 chr15 85059887 85060231 + 3 NA intron (NM_173454, intron 1 of 20) L1MB3|LINE|L1 78085 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 243-106 chr13 22818868 22818956 + 3 NA Intergenic L1MA6|LINE|L1 79269 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 945-16 chr8 127180914 127181478 + 3 NA Intergenic Intergenic 16431 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 812-5 chr1 186735844 186736426 + 3 NA Intergenic L2c|LINE|L2 55481 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 393-203 chr21 27582673 27582874 + 3 NA Intergenic Intergenic -139606 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 658-130 chr8 138411845 138412216 + 3 NA intron (NM_001362965, intron 1 of 19) L1PA16|LINE|L1 85231 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 621-5 chr1 158588041 158588388 + 3 NA Intergenic L1MDa|LINE|L1 -8315 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 264-214 chr2 136105298 136105448 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 10862 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 629-148 chrX 88931991 88932356 + 3 NA Intergenic Intergenic 184948 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 430-85 chr14 53214904 53215229 + 3 NA Intergenic L2|LINE|L2 61712 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 451-75 chr14 82926329 82926676 + 3 NA Intergenic L1ME3A|LINE|L1 283870 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 252-17 chr1 115208445 115208595 + 3 NA Intergenic MER30|DNA|hAT-Charlie -74514 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 506-79 chr13 102052814 102053026 + 3 NA intron (NM_175929, intron 1 of 4) L1M1|LINE|L1 -6916 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 536-140 chr2 223212023 223212242 + 3 NA Intergenic L1MA4A|LINE|L1 160202 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 766-34 chr2 90065183 90065631 + 3 NA Intergenic L1PA13|LINE|L1 -427500 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 608-84 chr20 40156659 40156914 + 3 NA Intergenic Intergenic 152325 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 720-74 chr5 163743706 163744119 + 3 NA Intergenic Intergenic 238293 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 224-300 chr7 71399287 71399398 + 3 NA intron (NM_022479, intron 3 of 10) HAL1|LINE|L1 -91572 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 677-40 chr17 69649578 69649956 + 3 NA intron (NR_109972, intron 3 of 4) L1MB4|LINE|L1 55780 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 483-17 chr1 219346484 219346720 + 3 NA Intergenic Intergenic 171633 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 894-10 chr12 15181187 15181630 + 3 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 29485 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 586-113 chr4 79076585 79076859 + 3 NA intron (NR_038342, intron 2 of 5) L1PA15|LINE|L1 104974 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 951-6 chr12 16744511 16745274 + 3 NA Intergenic Intergenic -136678 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 266-7 chr1 60399585 60399711 + 3 NA Intergenic (ATAAT)n|Simple_repeat|Simple_repeat 223037 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 894-38 chr5 179022713 179023083 + 3 NA promoter-TSS (NM_001136116) promoter-TSS (NM_001136116) -906 NM_001353372 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 541-169 chr4 83821221 83821524 + 3 NA Intergenic Intergenic 285264 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 378-68 chr10 113029297 113029468 + 3 NA intron (NM_001367943, intron 4 of 14) intron (NM_001367943, intron 4 of 14) -15973 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 807-13 chr13 33898038 33898418 + 3 NA intron (NM_181558, intron 8 of 8) L1MA4|LINE|L1 80079 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 545-106 chr2 29900056 29900257 + 3 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 21430 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 414-126 chr17 78260376 78260552 + 3 NA TTS (NR_073178) TTS (NR_073178) 18028 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 547-186 chr5 76728156 76728468 + 3 NA intron (NM_001992, intron 1 of 1) L1MA8|LINE|L1 12186 NM_001311313 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 560-105 chr21 27470357 27470574 + 3 NA Intergenic Intergenic -251914 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 246-117 chr14 60321334 60321443 + 3 NA Intergenic Intergenic -1808 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 854-18 chr15 87438458 87438854 + 3 NA Intergenic L1MB8|LINE|L1 -138273 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 811 chr1 40465188 40465722 + 3 NA Intergenic Intergenic -11835 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 424-5 chr1 85604701 85605044 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR 24111 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 489-262 chr8 139499405 139499643 + 3 NA Intergenic Intergenic 203599 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 591-32 chr12 126012882 126013176 + 3 NA Intergenic Intergenic -29655 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 424-209 chr4 178707040 178707298 + 3 NA Intergenic Intergenic -799233 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 333-443 chr5 39030312 39030445 + 3 NA intron (NM_001285439, intron 2 of 38) intron (NM_001285439, intron 2 of 38) 44021 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 337-401 chr4 75787914 75788146 + 3 NA intron (NM_003715, intron 10 of 23) HAL1|LINE|L1 63508 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 339-232 chr19 21181202 21181381 + 3 NA intron (NM_001319126, intron 5 of 5) L1MB2|LINE|L1 39251 NM_001319126 170959 Hs.156256 NM_133473 ENSG00000196705 ZNF431 - zinc finger protein 431 protein-coding 288-293 chr4 42894363 42894546 + 3 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 1188 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 1505-2 chr10 105572463 105573222 + 3 NA Intergenic Intergenic 247491 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 568-161 chr5 93196223 93196496 + 3 NA Intergenic Intergenic 374984 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 497-11 chr1 211008053 211008263 + 3 NA intron (NM_002238, intron 6 of 10) L1MB3|LINE|L1 125216 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 324-383 chr4 44097917 44098057 + 3 NA Intergenic L1ME3A|LINE|L1 80925 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 519-256 chr9 113700196 113700513 + 3 NA Intergenic L2|LINE|L2 106225 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 306-447 chr6 156220705 156220866 + 3 NA Intergenic L1MEf|LINE|L1 -157965 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 780-39 chr3 106420345 106420730 + 3 NA Intergenic Intergenic -551136 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 510-110 chr18 2425650 2425911 + 3 NA Intergenic Intergenic 145725 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 746-68 chr7 8961917 8962307 + 3 NA Intergenic Intergenic 528503 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 894-46 chr7 35472162 35472605 + 3 NA Intergenic Intergenic 158528 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 587-154 chr7 68904170 68904537 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 693271 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 606-118 chr4 72493138 72493542 + 3 NA intron (NM_014243, intron 3 of 21) L1MA9|LINE|L1 75881 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 264-150 chr16 8364581 8364738 + 3 NA Intergenic Intergenic 225179 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 421-188 chr3 99217403 99217633 + 3 NA Intergenic L2a|LINE|L2 -315823 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 407-264 chr5 163714974 163715146 + 3 NA Intergenic L2c|LINE|L2 209441 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 552-5 chr1 65305685 65305877 + 3 NA intron (NM_014787, intron 1 of 18) MIRc|SINE|MIR -3762 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 370-194 chr18 37765605 37765764 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 108549 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 489-137 chr2 83362049 83362330 + 3 NA Intergenic Intergenic -160625 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 522-270 chr9 77080282 77080643 + 3 NA Intergenic Intergenic 60807 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 788-35 chr3 51014551 51015161 + 3 NA intron (NM_004947, intron 5 of 52) L1M1|LINE|L1 339776 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 339-115 chr11 127915821 127916031 + 3 NA Intergenic L1MCa|LINE|L1 -292840 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 483-75 chr15 38135551 38135741 + 3 NA Intergenic L1ME1|LINE|L1 -62656 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 434-200 chr3 192680693 192680867 + 3 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 46761 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 828-35 chr4 102489688 102490332 + 3 NA intron (NR_136202, intron 1 of 4) L1PB1|LINE|L1 -11349 NM_003998 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 620-18 chr10 91327926 91328297 + 3 NA intron (NR_024467, intron 4 of 4) L1MB7|LINE|L1 -81124 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 873-29 chr5 53287850 53288242 + 3 NA Intergenic AluSx3|SINE|Alu 178204 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 517-139 chr2 126924818 126925094 + 3 NA Intergenic L1M2|LINE|L1 26066 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 842-29 chr21 40417570 40418064 + 3 NA intron (NR_073202, intron 3 of 32) intron (NR_073202, intron 3 of 32) 34733 NR_038899 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 214-212 chr3 87995520 87995616 + 3 NA Intergenic Intergenic 12992 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 481-319 chrX 14469865 14470147 + 3 NA Intergenic Intergenic -59292 NM_001171942 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 532-16 chr1 241689948 241690292 + 3 NA intron (NM_001367482, intron 8 of 27) L1MC1|LINE|L1 37839 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 297-171 chr17 33121327 33121475 + 3 NA intron (NM_001094, intron 1 of 9) L2a|LINE|L2 128550 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 831-30 chr22 24710524 24710827 + 3 NA Intergenic L1M4|LINE|L1 -51528 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 445-186 chr4 30218332 30218577 + 3 NA Intergenic Intergenic -501915 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 322-404 chr5 4657646 4657801 + 3 NA Intergenic Intergenic -115758 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 436-159 chr20 12572969 12573160 + 3 NA Intergenic Intergenic 363899 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 578-174 chr8 77801909 77802290 + 3 NA Intergenic Intergenic 351402 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 149-88 chr5 124457151 124457222 + 3 NA Intergenic Intergenic -18666 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 345-415 chr5 42624422 42624552 + 3 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 58623 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 484-191 chr4 91999392 91999651 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 277781 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 420-296 chr8 126021053 126021320 + 3 NA Intergenic MIR3|SINE|MIR -69989 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 278-123 chr14 86597678 86597875 + 3 NA Intergenic MLT1E1|LTR|ERVL-MaLR -308002 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 863-5 chr11 27134710 27135205 + 3 NA intron (NR_125767, intron 3 of 4) L1M2|LINE|L1 83811 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 618-59 chr2 77542547 77542902 + 3 NA Intergenic L1P4|LINE|L1 -20291 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 441-287 chrX 134646761 134646993 + 3 NA intron (NM_001316887, intron 2 of 3) intron (NM_001316887, intron 2 of 3) 11594 NM_021796 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2B|OOSP2L placenta enriched 1 protein-coding 481-79 chr13 73180104 73180320 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 121207 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 787-7 chr12 34581622 34581996 + 3 NA Intergenic L1PA3|LINE|L1 559313 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 812-18 chr14 25353097 25353594 + 3 NA Intergenic Intergenic -303048 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 414-169 chr2 156125929 156126157 + 3 NA intron (NR_110250, intron 1 of 3) LTR81AB|LTR|Gypsy 128888 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 572-16 chr10 48641144 48641470 + 3 NA intron (NM_001347738, intron 2 of 10) L1MB7|LINE|L1 11195 NM_001256025 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 628-64 chr19 56530198 56530518 + 3 NA TTS (NM_020813) TTS (NM_020813) -8590 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 490-52 chr11 24033064 24033315 + 3 NA Intergenic L1PA11|LINE|L1 -463864 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 388-90 chr12 119388729 119388942 + 3 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 54106 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 607-43 chr14 78675229 78675600 + 3 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 271695 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 448-51 chr11 72884003 72884203 + 3 NA intron (NM_014824, intron 12 of 19) L1MC5a|LINE|L1 69692 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 520-77 chr13 90893140 90893423 + 3 NA intron (NR_027039, intron 5 of 5) L1P2|LINE|L1 33316 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 877-21 chr4 59463683 59464147 + 3 NA Intergenic Intergenic 450342 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 869-32 chr2 99258698 99259242 + 3 NA Intergenic L1M5|LINE|L1 -3863 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 708-42 chr3 24782779 24783078 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -46395 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 891-10 chr14 29565620 29566297 + 3 NA Intergenic L1MA7|LINE|L1 361138 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 438-223 chr5 95366728 95366946 + 3 NA Intergenic L1ME4a|LINE|L1 -24529 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 586-104 chr3 157736386 157736598 + 3 NA Intergenic L1M3f|LINE|L1 193148 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 508 chr1 5191578 5191898 + 3 NA Intergenic Intergenic 537129 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 830-36 chr3 193954905 193955330 + 3 NA Intergenic L1MA5|LINE|L1 39121 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 482-122 chr2 51989209 51989553 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -381267 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 370-444 chr8 103651769 103651901 + 3 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -149925 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 802-22 chr14 95379785 95380248 + 3 NA Intergenic HAL1M8|LINE|L1 50432 NR_110127 101929080 Hs.525567 NR_110127 ENSG00000258630 LINC02292 - long intergenic non-protein coding RNA 2292 ncRNA 365-290 chr4 59653648 59653788 + 3 NA Intergenic Intergenic 640145 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 559-35 chr12 49547699 49548011 + 3 NA intron (NM_012284, intron 7 of 14) intron (NM_012284, intron 7 of 14) 8825 NM_012284 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 362-447 chr8 120552626 120552804 + 3 NA intron (NM_021021, intron 4 of 6) MER1A|DNA|hAT-Charlie 107296 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 435-237 chr8 79678718 79678894 + 3 NA Intergenic L1M6|LINE|L1 67689 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 607-160 chrX 82405946 82406277 + 3 NA Intergenic L1MA7|LINE|L1 -1102179 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 532-8 chr1 118457606 118457922 + 3 NA Intergenic Intergenic -272536 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 238-320 chr6 62969660 62969829 + 3 NA Intergenic Intergenic 350233 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 497-122 chr2 57937229 57937476 + 3 NA intron (NM_001288838, intron 1 of 15) (TTTC)n|Simple_repeat|Simple_repeat 29701 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 624-130 chr9 88606815 88607168 + 3 NA Intergenic Intergenic 71813 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 411-259 chr6 103263221 103263398 + 3 NA Intergenic Intergenic 1596237 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 885-30 chr8 136223971 136224408 + 3 NA Intergenic Intergenic -306609 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 433-220 chr5 41314487 41314657 + 3 NA intron (NM_001005473, intron 2 of 2) L2a|LINE|L2 -53103 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 606-35 chr12 17892978 17893265 + 3 NA Intergenic Intergenic 197072 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 1099-9 chr18 14102769 14103356 + 3 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 29373 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 873-16 chr2 43137891 43138416 + 3 NA Intergenic AluSx|SINE|Alu -35708 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 572-115 chr3 173505574 173505864 + 3 NA intron (NM_014932, intron 2 of 6) L2a|LINE|L2 -78715 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 395-218 chr3 47680863 47681066 + 3 NA intron (NM_003074, intron 14 of 27) intron (NM_003074, intron 14 of 27) -19270 NR_145791 109623484 NR_145791 SNORD146 - small nucleolar RNA, C/D box 146 snoRNA 412-243 chr4 159663138 159663380 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 114525 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 616-33 chr12 87425353 87425691 + 3 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat 94783 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 535-263 chrX 57677089 57677323 + 3 NA 3' UTR (NM_001319967, exon 1 of 1) 3' UTR (NM_001319967, exon 1 of 1) 3054 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 570-145 chr4 61394487 61394740 + 3 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 192441 NM_001371342 268-351 chr6 117110280 117110454 + 3 NA Intergenic L3|LINE|CR1 -155191 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 531-57 chr14 35749420 35749615 + 3 NA intron (NM_014990, intron 9 of 40) MIR3|SINE|MIR 13414 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 681-72 chr6 67203158 67203517 + 3 NA Intergenic L1PB4|LINE|L1 -852014 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 467-162 chr21 35930476 35930775 + 3 NA Intergenic Intergenic 44180 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 759 chr1 60220097 60220583 + 3 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -146570 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 457-115 chr2 51685451 51685665 + 3 NA intron (NR_135237, intron 5 of 10) L1MA9|LINE|L1 652957 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 469-2 chr1 40428818 40429065 + 3 NA Intergenic (AAATA)n|Simple_repeat|Simple_repeat -21123 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 475-289 chr8 129425589 129425894 + 3 NA intron (NR_130920, intron 1 of 3) L1PB1|LINE|L1 58401 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 944 chr1 73811983 73812459 + 3 NA Intergenic L1ME4b|LINE|L1 137542 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 334-117 chr12 115460876 115461103 + 3 NA Intergenic L1ME3G|LINE|L1 687665 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 1048-18 chr4 80452440 80452850 + 3 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 116925 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 673-106 chr6 164973436 164973806 + 3 NA Intergenic Intergenic -151558 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 412-165 chr2 114298617 114298901 + 3 NA Intergenic Intergenic -143882 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 504-23 chr10 49087503 49087847 + 3 NA intron (NM_001031746, intron 2 of 7) L1MEg|LINE|L1 27847 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 352-268 chr2 211202238 211202412 + 3 NA Intergenic Intergenic 584754 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 504-17 chr1 223115828 223116056 + 3 NA intron (NM_003268, intron 5 of 5) L2a|LINE|L2 27306 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 760-34 chr2 145619623 145619985 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 951837 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 385-46 chr11 27765363 27765521 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -43412 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 437-221 chr5 45735368 45735552 + 3 NA Intergenic Intergenic -39080 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 389-73 chr12 3528489 3528656 + 3 NA intron (NM_019854, intron 1 of 9) L1MB3|LINE|L1 -35753 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 672-19 chr12 59155205 59155596 + 3 NA Intergenic L1MC4a|LINE|L1 -234862 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 361-457 chr8 118710469 118710642 + 3 NA intron (NR_038210, intron 3 of 4) MER102b|DNA|hAT-Charlie -88592 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 538-91 chr17 72792253 72792480 + 3 NA intron (NM_001352692, intron 6 of 9) LTR53B|LTR|ERVL -151894 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 1189-3 chr6 40117179 40117851 + 3 NA Intergenic Intergenic -183053 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 583-126 chr4 100588104 100588493 + 3 NA Intergenic Intergenic -70276 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 441-80 chr14 77979504 77979676 + 3 NA Intergenic LTR16E1|LTR|ERVL 179481 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 640-82 chr3 88684485 88684786 + 3 NA Intergenic Intergenic 346179 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 417-139 chr2 81279858 81280035 + 3 NA Intergenic Intergenic 187000 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 333-227 chr2 31486937 31487073 + 3 NA Intergenic L1M5|LINE|L1 -72263 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 726-53 chr3 193418484 193418975 + 3 NA intron (NM_032279, intron 25 of 29) L1MA6|LINE|L1 -39976 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 471-154 chr21 26754242 26754487 + 3 NA Intergenic Intergenic 91045 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 817-5 chr1 175605116 175605462 + 3 NA intron (NM_003285, intron 1 of 22) MIRb|SINE|MIR 138306 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 453-284 chr8 102724961 102725211 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 68838 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 472-117 chr17 5089982 5090159 + 3 NA intron (NM_153018, intron 1 of 1) intron (NM_153018, intron 1 of 1) 11603 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 472-119 chr17 32841506 32841725 + 3 NA intron (NM_015194, intron 1 of 21) L2c|LINE|L2 35509 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 515-15 chr1 223468006 223468229 + 3 NA Intergenic L1MB8|LINE|L1 74702 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 235-144 chr18 5339555 5339661 + 3 NA Intergenic LTR55|LTR|ERVL? -42555 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 485-96 chr16 64015599 64015917 + 3 NA Intergenic Intergenic 1106305 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 229-237 chr21 32012967 32013049 + 3 NA Intergenic (AAAAC)n|Simple_repeat|Simple_repeat 73287 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 486-85 chr14 71030471 71030665 + 3 NA intron (NM_014982, intron 16 of 35) L4_B_Mam|LINE|RTE-X 123109 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 385-8 chr1 111328483 111328687 + 3 NA Intergenic L1PREC2|LINE|L1 -17975 NR_125338 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 421-185 chr3 76371017 76371233 + 3 NA Intergenic (GTATGT)n|Simple_repeat|Simple_repeat -585576 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 528-98 chr15 87334923 87335206 + 3 NA Intergenic L1MC3|LINE|L1 -241865 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 1251-2 chr1 113442968 113443752 + 3 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 52845 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 375-141 chr15 48560366 48560530 + 3 NA intron (NM_000138, intron 6 of 65) intron (NM_000138, intron 6 of 65) 85340 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 370-488 chrX 68971645 68971809 + 3 NA Intergenic L1MA9|LINE|L1 142730 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 599-139 chr8 138663493 138663866 + 3 NA intron (NM_152888, intron 42 of 64) intron (NM_152888, intron 42 of 64) -165949 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1036-15 chr2 142547324 142547837 + 3 NA Intergenic L1MB1|LINE|L1 -330084 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 538-120 chr2 125436490 125436837 + 3 NA Intergenic L1MB4|LINE|L1 681322 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 710-3 chr1 76978599 76979005 + 3 NA intron (NM_001320274, intron 2 of 2) L1MA6|LINE|L1 -81341 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 452-183 chr4 42985458 42985724 + 3 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 92325 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 853-4 chr11 88643497 88644018 + 3 NA intron (NM_001143831, intron 3 of 8) intron (NM_001143831, intron 3 of 8) 139181 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 612-47 chr17 70966090 70966395 + 3 NA Intergenic L1ME1|LINE|L1 235937 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 404-345 chr9 100211961 100212216 + 3 NA intron (NR_134606, intron 3 of 16) intron (NR_134606, intron 3 of 16) 112845 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 477-223 chr4 61485162 61485405 + 3 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 283111 NM_001371342 326-544 chr8 109637457 109637626 + 3 NA intron (NM_001099746, intron 1 of 5) intron (NM_001099746, intron 1 of 5) 5649 NM_001099756 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 581-118 chr4 95892075 95892337 + 3 NA Intergenic L1MEg|LINE|L1 52113 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 571-172 chr8 86226339 86226571 + 3 NA intron (NM_138817, intron 1 of 3) L2|LINE|L2 3926 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 687-130 chrUn_GL000216v2 13330 13782 + 3 NA NA (CATTC)n|Satellite|Satellite NA NA 620-27 chr12 99944724 99945077 + 3 NA intron (NM_152788, intron 1 of 25) L2a|LINE|L2 39754 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 1094-3 chr14 71425914 71426462 + 3 NA intron (NM_015556, intron 4 of 26) L1MB3|LINE|L1 -12751 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 553-241 chr8 130698143 130698521 + 3 NA Intergenic L1ME3G|LINE|L1 -254658 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 351-355 chr4 114856394 114856590 + 3 NA intron (NM_022569, intron 7 of 13) BLACKJACK|DNA|hAT-Blackjack 199733 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 736-59 chr3 186300232 186300667 + 3 NA intron (NM_001346, intron 3 of 24) intron (NM_001346, intron 3 of 24) 61785 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 712-26 chr13 94558830 94559171 + 3 NA Intergenic MER51A|LTR|ERV1 -9594 NM_001322185 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 502-149 chr2 152328283 152328458 + 3 NA Intergenic AluJr|SINE|Alu -6804 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 695-104 chr8 123723650 123724057 + 3 NA intron (NM_004306, intron 1 of 10) L2b|LINE|L2 13540 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 327-113 chr12 40954756 40954948 + 3 NA intron (NM_001256064, intron 14 of 15) MER77B|LTR|ERVL 46495 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 901-18 chr3 119915552 119916308 + 3 NA intron (NM_002093, intron 5 of 11) L1ME4b|LINE|L1 133220 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 188-99 chr2 83437482 83437564 + 3 NA Intergenic Intergenic -85291 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 518-268 chr7 16016829 16017058 + 3 NA Intergenic L1ME2z|LINE|L1 -193543 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 393-142 chr18 33241430 33241618 + 3 NA intron (NM_001308126, intron 15 of 23) L1MA5A|LINE|L1 199047 NM_001371121 333-428 chr5 7443817 7443943 + 3 NA intron (NM_020546, intron 2 of 24) L1MC5a|LINE|L1 47742 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 390-93 chr14 56110978 56111143 + 3 NA Intergenic L1MB1|LINE|L1 -7351 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 282-125 chr14 53225176 53225346 + 3 NA Intergenic L1MA5A|LINE|L1 71907 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 520-89 chr14 54020988 54021298 + 3 NA Intergenic L1PA15|LINE|L1 -64252 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 456-243 chr5 19438183 19438358 + 3 NA Intergenic Intergenic 448002 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 359-70 chr10 106745806 106745947 + 3 NA intron (NM_001206569, intron 5 of 25) L1MD3|LINE|L1 418830 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 726-60 chr5 46188801 46189240 + 3 NA Intergenic ALR/Alpha|Satellite|centr -492640 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 453-130 chr2 185602318 185602634 + 3 NA Intergenic L1MEg|LINE|L1 136243 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 505-230 chr4 173066490 173066699 + 3 NA Intergenic L1PB1|LINE|L1 -102217 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 321-284 chr2 57966763 57966970 + 3 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 59215 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 351-421 chr6 88034375 88034525 + 3 NA Intergenic L1MC|LINE|L1 -13391 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 912-17 chr17 50432332 50432761 + 3 NA intron (NM_001288968, intron 2 of 16) intron (NM_001288968, intron 2 of 16) 6388 NM_001288968 80221 Hs.288959 NM_025149 ENSG00000167107 ACSF2 ACSMW|AVYV493 acyl-CoA synthetase family member 2 protein-coding 558-200 chr7 48060675 48060999 + 3 NA 3' UTR (NM_001267866, exon 7 of 7) 3' UTR (NM_001267866, exon 7 of 7) 25294 NM_001100159 136288 Hs.258357 NM_001100159 ENSG00000164746 C7orf57 - chromosome 7 open reading frame 57 protein-coding 456-92 chr14 61946608 61946832 + 3 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 19025 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 1013 chr12 130538189 130538684 + 3 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 90020 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 434-236 chr5 166508103 166508344 + 3 NA Intergenic MamRTE1|LINE|RTE-BovB 418147 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 454-283 chr7 6015038 6015237 + 3 NA intron (NM_001326610, intron 2 of 4) intron (NM_001326610, intron 2 of 4) -1740 NR_145771 109616999 NR_145771 ENSG00000207217 SNORA80D - small nucleolar RNA, H/ACA box 80D snoRNA 361-264 chr21 23960943 23961093 + 3 NA Intergenic MER89|LTR|ERV1 360359 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 461-258 chr8 46070745 46070994 + 3 NA Intergenic ALR/Alpha|Satellite|centr 546774 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 382-421 chr8 126001779 126002031 + 3 NA Intergenic L1ME3|LINE|L1 -50708 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 415-203 chr4 186132078 186132230 + 3 NA intron (NM_001367768, intron 1 of 13) intron (NM_001367768, intron 1 of 13) -12133 NM_001006655 25854 Hs.744961 NM_015398 ENSG00000109794 FAM149A MST119|MSTP119 family with sequence similarity 149 member A protein-coding 592-45 chr14 43121579 43121872 + 3 NA Intergenic L1MC3|LINE|L1 1385558 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 876-26 chr3 166291267 166291850 + 3 NA Intergenic Intergenic -454135 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 460-176 chr20 48058490 48058677 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -68466 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 540-97 chr17 69966233 69966515 + 3 NA intron (NR_110875, intron 2 of 4) MLT1J1-int|LTR|ERVL-MaLR 4667 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 350-300 chr3 7852150 7852398 + 3 NA Intergenic Intergenic 164033 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 414-266 chr5 42510406 42510617 + 3 NA intron (NM_001242401, intron 2 of 10) Tigger9a|DNA|TcMar-Tigger -37532 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 464-234 chr7 25785570 25785843 + 3 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 4413 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 814-43 chr4 7589107 7589630 + 3 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) 129340 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 474-8 chr1 78549528 78549728 + 3 NA Intergenic L1PA16|LINE|L1 58654 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 400-117 chr16 19676295 19676472 + 3 NA intron (NM_001300743, intron 24 of 27) intron (NM_001300743, intron 24 of 27) -40073 NM_001305122 124152 Hs.460217 NM_153208 ENSG00000174628 IQCK - IQ motif containing K protein-coding 284-347 chr6 48668249 48668392 + 3 NA Intergenic Intergenic -599631 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 286-289 chr3 98392347 98392539 + 3 NA TTS (NM_001005516) TTS (NM_001005516) 1777 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 527-245 chr7 53394347 53394537 + 3 NA Intergenic L1MD|LINE|L1 358809 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 885-35 chrX 76753669 76754097 + 3 NA intron (NR_110400, intron 1 of 3) L1PA17|LINE|L1 165477 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 814-49 chr5 36999099 36999456 + 3 NA intron (NM_015384, intron 11 of 45) intron (NM_015384, intron 11 of 45) 122508 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 382-443 chrX 43449349 43449581 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -205442 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 481-282 chr7 69909373 69909569 + 3 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 310996 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 515-53 chr12 13909077 13909318 + 3 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 71159 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 245-240 chr3 176849847 176849949 + 3 NA Intergenic Intergenic -32897 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 413-148 chr2 125578507 125578659 + 3 NA Intergenic Intergenic 539402 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 503-136 chr19 36599497 36599807 + 3 NA intron (NM_001145650, intron 1 of 4) L1ME3|LINE|L1 5605 NM_001145649 57711 Hs.654960 NM_020951 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 447-291 chr9 71429099 71429316 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 17764 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 569-178 chr8 106898524 106898830 + 3 NA Intergenic Intergenic -128433 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 505-196 chr3 97256855 97257076 + 3 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -182642 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 373-122 chr14 82471249 82471441 + 3 NA Intergenic MER34|LTR|ERV1 -171287 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 776-47 chr5 153956890 153957232 + 3 NA Intergenic Intergenic -58074 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 361-53 chr10 95541920 95542076 + 3 NA intron (NM_001290295, intron 1 of 24) intron (NM_001290295, intron 1 of 24) 19373 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 465-60 chr12 40969646 40969864 + 3 NA intron (NM_001843, intron 15 of 23) Chap1_Mam|DNA|hAT-Charlie 61398 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 430-87 chr14 59059819 59060088 + 3 NA Intergenic Intergenic -128714 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 822-3 chr1 71166784 71167262 + 3 NA intron (NR_046217, intron 2 of 3) intron (NR_046217, intron 2 of 3) 85699 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 1072 chr1 205882050 205882555 + 3 NA intron (NR_046097, intron 1 of 2) L1MA5A|LINE|L1 -7718 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 542-230 chr8 125363631 125363922 + 3 NA intron (NM_001349486, intron 7 of 7) intron (NM_001349486, intron 7 of 7) -66582 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 479-19 chr10 21485599 21485846 + 3 NA Intergenic Intergenic 10919 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 475-7 chr1 106033825 106034109 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -5714 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 454-7 chr1 72752667 72752894 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -470241 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 885-25 chr7 22644129 22644562 + 3 NA Intergenic L1MA9|LINE|L1 21188 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 498-110 chr18 75941266 75941469 + 3 NA Intergenic MIRb|SINE|MIR -181631 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 449-170 chr3 99538503 99538828 + 3 NA Intergenic Intergenic -99929 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 582-25 chr12 38027437 38027653 + 3 NA Intergenic ALR/Alpha|Satellite|centr -289229 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 775-62 chr4 164663189 164663625 + 3 NA Intergenic Intergenic -90724 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 946-19 chr5 2553413 2554020 + 3 NA Intergenic L1ME2|LINE|L1 -158875 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 322-431 chr5 74453987 74454194 + 3 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 82886 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 570-109 chr2 79456692 79457078 + 3 NA Intergenic Intergenic 43959 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 306-426 chr6 39950248 39950383 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -15853 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1196-13 chr9 100494785 100495293 + 3 NA intron (NM_003692, intron 1 of 9) Charlie22a|DNA|hAT-Charlie 21890 NM_003692 8577 Hs.598100 NM_003692 ENSG00000241697 TMEFF1 C9orf2|CT120.1|H7365|TR-1 transmembrane protein with EGF like and two follistatin like domains 1 protein-coding 679-44 chr17 69860757 69861034 + 3 NA intron (NR_109972, intron 4 of 4) intron (NR_109972, intron 4 of 4) -100812 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 869-2 chr1 79311096 79311447 + 3 NA Intergenic Intergenic -304541 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 431-229 chr5 85563402 85563623 + 3 NA Intergenic Intergenic -718932 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 440-71 chr14 87339342 87339588 + 3 NA Intergenic Intergenic 315829 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 351-47 chr10 61033153 61033271 + 3 NA Intergenic L2|LINE|L2 16937 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 964-18 chr20 52657082 52657710 + 3 NA Intergenic L2a|LINE|L2 36558 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 375-31 chr1 247186694 247186920 + 3 NA Intergenic Intergenic -14790 NM_001297567 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 690-57 chr2 81452656 81452992 + 3 NA Intergenic Intergenic 14122 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 731-28 chr14 46139423 46139868 + 3 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 75486 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 606-96 chr20 42727215 42727556 + 3 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 41902 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 680-15 chr10 26792127 26792539 + 3 NA intron (NM_001012752, intron 2 of 9) intron (NM_001012752, intron 2 of 9) 68754 NM_001348029 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 311-144 chr14 71198536 71198702 + 3 NA Intergenic LTR34|LTR|ERV1 -121857 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 497-190 chr3 186038969 186039247 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie 69981 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 334-150 chr14 66562169 66562283 + 3 NA intron (NM_001024218, intron 1 of 21) MER34A1|LTR|ERV1 54819 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 253-73 chr11 42274881 42274976 + 3 NA Intergenic L1M2|LINE|L1 -21238 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 339-603 chr9 22889239 22889386 + 3 NA Intergenic L2|LINE|L2 243112 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 592-140 chr5 58347699 58347977 + 3 NA Intergenic MLT2C1|LTR|ERVL 112248 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 872-18 chr14 78521467 78522026 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 118027 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 634-128 chr5 153780699 153781051 + 3 NA intron (NR_047578, intron 12 of 13) LTR84b|LTR|ERVL 118112 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 411-82 chr13 114094775 114094929 + 3 NA intron (NM_001320821, intron 1 of 25).2 intron (NM_001320821, intron 1 of 25).2 -16897 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 748-76 chr5 147993281 147993799 + 3 NA Intergenic Intergenic -70432 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 429-20 chr1 187863185 187863386 + 3 NA Intergenic Intergenic 419657 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 554-16 chr1 170821414 170821705 + 3 NA Intergenic Intergenic -113912 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 518-278 chr7 63132427 63132755 + 3 NA Intergenic L1MA3|LINE|L1 171465 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 876-33 chr6 130540059 130540403 + 3 NA Intergenic L1PREC2|LINE|L1 103114 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 217-170 chr2 58935938 58936064 + 3 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -281707 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 464-42 chr12 32053546 32053748 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger -53160 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 688-80 chr3 154837694 154838048 + 3 NA Intergenic L2a|LINE|L2 -186253 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 593-107 chr4 78011690 78011994 + 3 NA Intergenic AluSp|SINE|Alu -45481 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 349-329 chr3 74957460 74957656 + 3 NA Intergenic L1MA6|LINE|L1 -256918 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 761-14 chr14 39541149 39541555 + 3 NA Intergenic L1PREC2|LINE|L1 -108852 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 502-254 chr8 40293282 40293491 + 3 NA Intergenic Intergenic 49977 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 981-30 chr8 27218376 27218964 + 3 NA Intergenic Intergenic 39734 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 598-138 chr8 76423354 76423705 + 3 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 16875 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 645-62 chr2 173535482 173535923 + 3 NA Intergenic Intergenic 180830 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 340-246 chr2 49998554 49998697 + 3 NA intron (NM_001330093, intron 21 of 22) Tigger15a|DNA|TcMar-Tigger -24422 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 198-151 chr22 40887243 40887335 + 3 NA intron (NM_022098, intron 4 of 9) MER68C|LTR|ERVL -25176 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 522-109 chr17 74077344 74077728 + 3 NA Intergenic MIR|SINE|MIR -126142 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 283-256 chr20 7191933 7192083 + 3 NA intron (NR_110609, intron 3 of 7) intron (NR_110609, intron 3 of 7) 62194 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 509-25 chr10 56373661 56373981 + 3 NA Intergenic Intergenic -12548 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 360-338 chr4 164542021 164542273 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -158892 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 711-34 chr2 59384066 59384422 + 3 NA Intergenic Intergenic 166536 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 273-388 chr6 56157219 56157416 + 3 NA intron (NM_030820, intron 9 of 29) AluSz|SINE|Alu -65655 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 555-175 chr6 64058104 64058366 + 3 NA intron (NM_001292009, intron 33 of 43) THE1B|LTR|ERVL-MaLR 251399 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 611-63 chr18 4939673 4940085 + 3 NA Intergenic Intergenic -141303 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 717-26 chr14 49270627 49270988 + 3 NA Intergenic L2b|LINE|L2 315573 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 763-68 chr9 35144656 35145056 + 3 NA Intergenic MER51-int|LTR|ERV1 -17153 NM_001371189 561-136 chr3 99876536 99876824 + 3 NA promoter-TSS (NM_001282793) promoter-TSS (NM_001282793) -477 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 385-315 chr5 179079231 179079433 + 3 NA exon (NM_014594, exon 5 of 5) exon (NM_014594, exon 5 of 5) 18959 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 408-98 chr13 86032381 86032553 + 3 NA Intergenic L2a|LINE|L2 -233048 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 912-19 chr19 33576301 33576714 + 3 NA Intergenic Intergenic -45446 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 444-206 chr5 125857527 125857739 + 3 NA Intergenic L1MEf|LINE|L1 -321944 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 506-26 chr1 214578200 214578448 + 3 NA Intergenic Intergenic -24871 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 518-321 chr9 138108073 138108425 + 3 NA intron (NM_001243812, intron 38 of 45) AluJo|SINE|Alu -41864 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 689-28 chr13 108074925 108075440 + 3 NA Intergenic MER92-int|LTR|ERV1 139600 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 626-90 chr3 43826958 43827275 + 3 NA Intergenic L1MEd|LINE|L1 -135522 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 669-2 chr1 47650396 47650840 + 3 NA Intergenic Intergenic -213301 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 542-164 chr5 45887416 45887684 + 3 NA Intergenic MER110|LTR|ERV1 -191170 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 566-196 chr8 119466676 119466909 + 3 NA Intergenic L1PA13|LINE|L1 50346 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 352-433 chr5 141092309 141092491 + 3 NA Intergenic L1MC5a|LINE|L1 -2215 NM_018936 56133 Hs.533023 NM_018936 ENSG00000112852 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 363-320 chr4 44362190 44362344 + 3 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 86542 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 542-159 chr5 6836091 6836409 + 3 NA Intergenic Intergenic -8329 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 699-76 chr4 104103319 104103725 + 3 NA Intergenic L1M6|LINE|L1 -383537 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 390-40 chr10 71157188 71157365 + 3 NA Intergenic AluJb|SINE|Alu -55294 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 294-410 chr6 91928847 91929053 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -238522 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 435-90 chr16 18032728 18032964 + 3 NA Intergenic MADE2|DNA|TcMar-Mariner 299816 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 459-114 chr18 11220258 11220505 + 3 NA Intergenic Intergenic -71619 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 775-2 chr1 99366133 99366535 + 3 NA Intergenic Intergenic 102042 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 405-207 chr3 111158418 111158634 + 3 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 86710 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 766-11 chr12 2416399 2416848 + 3 NA intron (NM_199460, intron 3 of 49).2 MIR|SINE|MIR 146847 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 576-174 chr8 129276831 129277151 + 3 NA Intergenic Intergenic -35751 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 610-124 chr4 45243517 45243922 + 3 NA Intergenic Intergenic -517085 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 971-21 chrX 62981362 62981788 + 3 NA Intergenic L1PA16|LINE|L1 369757 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 595-84 chr2 97930526 97930910 + 3 NA intron (NM_015348, intron 1 of 40) intron (NM_015348, intron 1 of 40) 65230 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 307-346 chr4 90100353 90100511 + 3 NA Intergenic LTR8B|LTR|ERV1 -27101 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 498-220 chr5 64860702 64860989 + 3 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 91915 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 572-13 chr1 236622267 236622543 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -17889 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 405-65 chr12 68103282 68103507 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 56346 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 441-145 chr20 42040254 42040501 + 3 NA Intergenic Intergenic -422000 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 437-68 chr14 28271013 28271192 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 494217 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 331-78 chr11 7104882 7105003 + 3 NA Intergenic L1ME3B|LINE|L1 15944 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 373-68 chr10 114794158 114794358 + 3 NA Intergenic L2a|LINE|L2 -25954 NM_001322886 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 333-104 chr11 132520489 132520627 + 3 NA intron (NM_002545, intron 3 of 6) L1MC4a|LINE|L1 236256 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 291-330 chr4 125273942 125274039 + 3 NA Intergenic Intergenic -42422 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 531-266 chr9 82258454 82258647 + 3 NA Intergenic Intergenic 269778 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 646-109 chr5 156780941 156781348 + 3 NA Intergenic Intergenic -69151 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 429-241 chr5 105810066 105810216 + 3 NA Intergenic Intergenic 710667 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 414-276 chr5 156603206 156603406 + 3 NA intron (NM_001128209, intron 5 of 7) L1MA6|LINE|L1 -246989 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 597-102 chr4 167889419 167889658 + 3 NA Intergenic L2c|LINE|L2 -202999 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 524-233 chr7 34692448 34692635 + 3 NA intron (NM_001300934, intron 2 of 6) L1PB4|LINE|L1 34302 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 387-44 chr10 90223336 90223467 + 3 NA Intergenic LTR38A1|LTR|ERV1 -266028 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 466-168 chr22 49562969 49563238 + 3 NA intron (NR_110523, intron 1 of 4) (CCATCA)n|Simple_repeat|Simple_repeat -19637 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 906-30 chr8 139808792 139809406 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -105976 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 715-4 chr10 60690252 60690645 + 3 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) 43080 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 921-2 chr1 196872479 196873123 + 3 NA Intergenic PABL_B-int|LTR|ERV1 -15251 NM_001201550 10877 Hs.710100 NM_006684 ENSG00000134365 CFHR4 CFHL4|FHR-4|FHR4 complement factor H related 4 protein-coding 427-256 chr8 82494545 82494740 + 3 NA Intergenic Intergenic -417462 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 545-82 chr16 8503959 8504175 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner 85771 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 382-65 chr11 96707714 96707858 + 3 NA Intergenic Intergenic 199361 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 480-225 chr5 8172004 8172263 + 3 NA Intergenic Intergenic 285431 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 479-262 chr8 126082237 126082483 + 3 NA Intergenic LTR50|LTR|ERVL -131163 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 661-9 chr11 2662406 2662851 + 3 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 37370 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 551-59 chr14 87782980 87783255 + 3 NA Intergenic Intergenic -127823 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 818-44 chr4 95140493 95140960 + 3 NA intron (NM_001256792, intron 8 of 10) intron (NM_001256792, intron 8 of 10) 49235 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 733-65 chr5 100108514 100108937 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 279529 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 261-307 chr5 36344430 36344565 + 3 NA Intergenic L1MD|LINE|L1 -42595 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 660-13 chr11 40671773 40672260 + 3 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -378886 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 651-18 chr10 75840796 75841108 + 3 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 58191 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 551-183 chr6 160301288 160301490 + 3 NA Intergenic Intergenic -42568 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 624-31 chr12 60355182 60355628 + 3 NA Intergenic Intergenic 666035 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 387-330 chr7 9638675 9638867 + 3 NA Intergenic L1MA5|LINE|L1 4501 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 399-96 chr14 78374866 78375039 + 3 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -28767 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 375-69 chr11 24214810 24215051 + 3 NA Intergenic L1PA10|LINE|L1 -282123 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 733-32 chr2 33852068 33852591 + 3 NA intron (NR_126403, intron 1 of 5) LOR1a|LTR|ERV1 -124112 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 209-293 chr7 31316349 31316489 + 3 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 24307 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 910-17 chr2 23106448 23107055 + 3 NA Intergenic Intergenic -278428 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 555-198 chr8 50766294 50766523 + 3 NA intron (NR_135797, intron 20 of 20) intron (NR_135797, intron 20 of 20) 602277 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 740-25 chr13 45187420 45187862 + 3 NA intron (NM_004128, intron 4 of 7) Tigger19a|DNA|TcMar-Tigger 13404 NM_198404 386618 Hs.23406 NM_198404 ENSG00000180332 KCTD4 bA321C24.3 potassium channel tetramerization domain containing 4 protein-coding 765-34 chr20 40793052 40793585 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -78695 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 541-201 chr6 50908156 50908467 + 3 NA Intergenic L2c|LINE|L2 89440 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 504-227 chr6 119174751 119174922 + 3 NA Intergenic Intergenic -25643 NM_001100411 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 426-102 chr17 14842754 14842931 + 3 NA Intergenic Intergenic -171963 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 401-87 chr14 47150660 47150893 + 3 NA intron (NM_001113498, intron 3 of 16) AluSx|SINE|Alu 192470 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 523-295 chrY 11329895 11330083 + 3 NA Intergenic BSR/Beta|Satellite|Satellite 1091601 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 676-43 chr16 86484167 86484523 + 3 NA intron (NR_033925, intron 1 of 3) MLT1J|LTR|ERVL-MaLR 24515 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 795-40 chr4 79791040 79791388 + 3 NA Intergenic L1PBa|LINE|L1 -36257 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 602-132 chr8 111118625 111118922 + 3 NA intron (NR_125418, intron 1 of 3) MLT2C1|LTR|ERVL -91340 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 411-190 chr3 132870091 132870279 + 3 NA intron (NR_002811, intron 10 of 10) intron (NR_002811, intron 10 of 10) -147726 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 319-448 chr6 15421427 15421633 + 3 NA intron (NM_004973, intron 3 of 17) intron (NM_004973, intron 3 of 17) 172675 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 1307-8 chr5 141359033 141359995 + 3 NA promoter-TSS (NM_032096) promoter-TSS (NM_032096) -622 NM_032096 56103 Hs.368160 NM_018923 ENSG00000253910 PCDHGB2 PCDH-GAMMA-B2 protocadherin gamma subfamily B, 2 protein-coding 418-312 chrX 87086048 87086227 + 3 NA Intergenic L1PA13|LINE|L1 -431665 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 1212-10 chr5 21213170 21213858 + 3 NA Intergenic Intergenic -245966 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 302-377 chr6 49035741 49035896 + 3 NA Intergenic L1MEc|LINE|L1 427435 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 460-44 chr11 35962938 35963182 + 3 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 18998 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 657-83 chr6 54255465 54255878 + 3 NA intron (NM_138569, intron 11 of 12) intron (NM_138569, intron 11 of 12) -52770 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 624-29 chr12 43549521 43549829 + 3 NA intron (NM_025003, intron 2 of 38) intron (NM_025003, intron 2 of 38) 2528 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 496-195 chr4 60121733 60121902 + 3 NA Intergenic Intergenic -800802 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 289-226 chr2 77021020 77021196 + 3 NA intron (NR_146416, intron 1 of 1) (TATC)n|Simple_repeat|Simple_repeat 35143 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 505-125 chr19 36964631 36965003 + 3 NA intron (NM_001204839, intron 5 of 8) intron (NM_001204839, intron 5 of 8) 48485 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 374-216 chr20 6985820 6986053 + 3 NA Intergenic L1PA15|LINE|L1 218250 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 667-116 chr8 112410948 112411399 + 3 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -232320 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 578-108 chr3 3057560 3057761 + 3 NA 3' UTR (NM_001206956, exon 16 of 16) 3' UTR (NM_001206956, exon 16 of 16) 3485 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 484-17 chr1 152836867 152837051 + 3 NA Intergenic L1M4b|LINE|L1 -5897 NM_001128600 448835 Hs.62927 NM_001128600 ENSG00000235942 LCE6A C1orf44 late cornified envelope 6A protein-coding 482-150 chr20 54533418 54533704 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 57968 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 508-69 chr16 7736806 7736997 + 3 NA Intergenic MLT2A2|LTR|ERVL 404056 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 270-363 chr7 85368416 85368581 + 3 NA Intergenic L1MA8|LINE|L1 -52624 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 467-59 chr11 134375319 134375540 + 3 NA 3' UTR (NM_138342, exon 19 of 20) 3' UTR (NM_138342, exon 19 of 20) 36489 NM_018644 27087 Hs.381050 NM_018644 ENSG00000109956 B3GAT1 CD57|GLCATP|GLCUATP|HNK1|LEU7|NK-1|NK1 beta-1,3-glucuronyltransferase 1 protein-coding 552-97 chr2 12908747 12909158 + 3 NA Intergenic Intergenic 98061 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 464-132 chr2 155577012 155577386 + 3 NA Intergenic Intergenic 677732 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 842-40 chr5 140731878 140732224 + 3 NA Intergenic L1ME3A|LINE|L1 5892 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 489-140 chr2 104193734 104193986 + 3 NA Intergenic L1M4|LINE|L1 214472 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 531-171 chr4 37047008 37047329 + 3 NA Intergenic Intergenic 45389 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 388-130 chr17 9201144 9201421 + 3 NA intron (NM_004822, intron 5 of 6) intron (NM_004822, intron 5 of 6) -22164 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 614-3 chr1 84234959 84235262 + 3 NA intron (NM_182948, intron 9 of 9) intron (NM_182948, intron 9 of 9) 53478 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 279-408 chr8 16303185 16303314 + 3 NA Intergenic L1MEc|LINE|L1 -110458 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 514-84 chr14 53071434 53071689 + 3 NA intron (NM_030637, intron 6 of 11) intron (NM_030637, intron 6 of 11) 81762 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 308-425 chr6 75276742 75276921 + 3 NA intron (NM_018247, intron 1 of 6) L2a|LINE|L2 7961 NM_018247 55754 Hs.108530 NM_018247 ENSG00000112697 TMEM30A C6orf67|CDC50A transmembrane protein 30A protein-coding 271-105 chr12 80568130 80568271 + 3 NA intron (NM_001145026, intron 25 of 44) Tigger6a|DNA|TcMar-Tigger 123965 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 276-281 chr3 6533956 6534112 + 3 NA Intergenic Intergenic 271415 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 532-222 chr6 53672301 53672597 + 3 NA Intergenic Intergenic -6693 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 596-173 chr8 136386265 136386626 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -144353 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 535-42 chr11 58469271 58469453 + 3 NA Intergenic L1MB8|LINE|L1 -29189 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 404-243 chr4 163459905 163460159 + 3 NA Intergenic LTR37-int|LTR|ERV1 13722 NM_032136 84076 Hs.303923 NM_032136 ENSG00000151005 TKTL2 - transketolase like 2 protein-coding 415-312 chrX 70855896 70856159 + 3 NA intron (NM_001003811, intron 6 of 30) HAL1ME|LINE|L1 -9732 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 427-136 chr20 41859542 41859805 + 3 NA Intergenic L1MC4|LINE|L1 -241296 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 537-273 chr9 72143932 72144329 + 3 NA intron (NM_001242507, intron 1 of 13) AluSx1|SINE|Alu -5221 NM_001242505 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 426-259 chr6 130328968 130329248 + 3 NA intron (NM_001258275, intron 1 of 13) intron (NM_001258275, intron 1 of 13) 36760 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 305-272 chr2 139663190 139663376 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 765959 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 513-173 chr3 25348843 25349100 + 3 NA intron (NM_001290300, intron 1 of 7) Charlie7|DNA|hAT-Charlie 8169 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 278-108 chr14 53586942 53587100 + 3 NA Intergenic AluY|SINE|Alu 361463 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 601-129 chr5 144277418 144277856 + 3 NA intron (NM_001370487, intron 2 of 2) L1MD2|LINE|L1 72246 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 535-232 chr7 112672447 112672833 + 3 NA intron (NR_110158, intron 5 of 7) L1ME1|LINE|L1 50259 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 436-331 chr9 102639709 102639996 + 3 NA intron (NR_103830, intron 3 of 4) intron (NR_103830, intron 3 of 4) 120215 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 534-83 chr16 9971824 9972076 + 3 NA intron (NM_001134408, intron 2 of 13) L1MEf|LINE|L1 210117 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 531-15 chr1 241252783 241253025 + 3 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 102922 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 364-148 chr15 83147334 83147517 + 3 NA intron (NM_016073, intron 5 of 5) L2|LINE|L2 39780 NM_001353884 53346 Hs.513094 NM_023003 ENSG00000136404 TM6SF1 - transmembrane 6 superfamily member 1 protein-coding 289-20 chr1 164085857 164086069 + 3 NA Intergenic Intergenic -473397 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 278-463 chrX 80443208 80443435 + 3 NA exon (NM_001170574, exon 5 of 5) exon (NM_001170574, exon 5 of 5) 22874 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 380-279 chr4 78695922 78696130 + 3 NA Intergenic MER41-int|LTR|ERV1 50032 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 730-18 chr15 38982506 38982890 + 3 NA Intergenic L1PA17|LINE|L1 -267971 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 268-238 chr3 20435407 20435546 + 3 NA Intergenic Intergenic 93008 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 586-43 chr12 58669345 58669563 + 3 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 77752 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 766-57 chr6 16041792 16042191 + 3 NA Intergenic Intergenic -87095 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 396-246 chr4 33574192 33574478 + 3 NA Intergenic Intergenic 465558 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 940-24 chr4 58552101 58552548 + 3 NA Intergenic Intergenic -15996 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 655-69 chr2 239172006 239172252 + 3 NA intron (NM_006037, intron 5 of 26) L1ME3A|LINE|L1 23328 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 508-223 chr7 53663151 53663487 + 3 NA intron (NR_038371, intron 5 of 5) L1PB2|LINE|L1 148612 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 473-235 chr5 169640108 169640385 + 3 NA intron (NR_156756, intron 1 of 52) intron (NR_156756, intron 1 of 52) 2971 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 430-228 chr5 4970963 4971129 + 3 NA Intergenic Intergenic -63313 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 533-92 chr19 52795460 52795800 + 3 NA Intergenic AluSx1|SINE|Alu -8839 NM_198457 162966 Hs.696848 NM_198457 ENSG00000189190 ZNF600 KR-ZNF1 zinc finger protein 600 protein-coding 360-204 chr2 15487682 15487861 + 3 NA intron (NR_052013, intron 12 of 50) intron (NR_052013, intron 12 of 50) 73563 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 519-235 chr8 83206234 83206488 + 3 NA Intergenic Intergenic -197397 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 328-31 chr1 195532728 195532911 + 3 NA Intergenic L1MA4|LINE|L1 555896 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 467-149 chr20 14133454 14133730 + 3 NA intron (NM_001351663, intron 3 of 17) L2a|LINE|L2 138076 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 406-108 chr16 83112403 83112612 + 3 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -122209 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 470-276 chr8 131491336 131491566 + 3 NA Intergenic Intergenic -412642 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 770-74 chr9 71864838 71865142 + 3 NA TTS (NM_001025780) TTS (NM_001025780) 46255 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 514-212 chr4 133432229 133432442 + 3 NA Intergenic Intergenic 283041 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 169-88 chr4 111001178 111001279 + 3 NA Intergenic Intergenic -140581 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 564-156 chr5 84019649 84019894 + 3 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -298916 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 617-55 chr18 61686800 61687154 + 3 NA Intergenic L1MD2|LINE|L1 -61199 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 810-56 chr8 91534891 91535317 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR 285785 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 460-220 chr4 64324131 64324368 + 3 NA intron (NM_001363796, intron 3 of 11) L1ME3C|LINE|L1 85201 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 487-274 chr7 64563524 64563803 + 3 NA promoter-TSS (NM_178558) promoter-TSS (NM_178558) -536 NM_001130022 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 553-63 chr14 62083978 62084265 + 3 NA intron (NM_001367661, intron 7 of 8) intron (NM_001367661, intron 7 of 8) -33236 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 652-98 chr5 102576338 102576755 + 3 NA Intergenic L1MC5|LINE|L1 -4822 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 488-25 chr10 41826885 41827172 + 3 NA Intergenic ALR/Alpha|Satellite|centr 541017 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 567-41 chr12 12546816 12547170 + 3 NA intron (NM_030640, intron 1 of 6).2 intron (NM_030640, intron 1 of 6).2 15870 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 531-138 chr20 42782734 42782967 + 3 NA intron (NM_133170, intron 3 of 31) intron (NM_133170, intron 3 of 31) 97367 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 420-178 chr3 8816296 8816510 + 3 NA Intergenic Intergenic -46789 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 372-368 chr4 85525498 85525629 + 3 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 50413 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 579-131 chr5 64595537 64595751 + 3 NA intron (NM_001271891, intron 2 of 3) intron (NM_001271891, intron 2 of 3) 19994 NM_001271890 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 519-116 chr2 136760449 136760698 + 3 NA Intergenic Intergenic -4972 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 265-33 chr10 52610383 52610541 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -139929 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 732-98 chr9 9674528 9675083 + 3 NA intron (NM_002839, intron 7 of 45) L1MEd|LINE|L1 -124587 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 372-498 chr8 130186166 130186367 + 3 NA intron (NM_001362925, intron 7 of 29) intron (NM_001362925, intron 7 of 29) -101498 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 283-158 chr16 20020630 20020786 + 3 NA Intergenic Intergenic 53070 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 556-216 chr8 36257088 36257443 + 3 NA Intergenic L1MC3|LINE|L1 -527109 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 722-63 chr6 22780332 22780796 + 3 NA Intergenic HERVL40-int|LTR|ERVL -62640 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 541-174 chr4 122034826 122035010 + 3 NA Intergenic L2b|LINE|L2 -82858 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 522-104 chr17 34047255 34047467 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 109445 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 433-42 chr11 34558647 34558888 + 3 NA Intergenic Intergenic -44973 NM_001422 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 743-86 chr8 124914239 124914689 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -27544 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 899-21 chr4 45357303 45357806 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -630920 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 528-124 chr2 21991468 21991775 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -280969 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 638-94 chr3 163919624 163919894 + 3 NA Intergenic Intergenic 251797 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 860-9 chr11 90743830 90744230 + 3 NA intron (NR_104190, intron 3 of 6) L1MB7|LINE|L1 125172 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 608-67 chr2 31106237 31106480 + 3 NA intron (NM_001329095, intron 1 of 15) L1M7|LINE|L1 23282 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 866-4 chr1 195322662 195323047 + 3 NA Intergenic L1MA3|LINE|L1 765861 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 277-58 chr10 76434204 76434310 + 3 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -453787 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 285-44 chr10 93793761 93793964 + 3 NA intron (NM_001308275, intron 7 of 7) intron (NM_001308275, intron 7 of 7) 35926 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 276-341 chr4 74051018 74051129 + 3 NA Intergenic L1MA4A|LINE|L1 4326 NR_026769 10895 Hs.3134 NM_006692 ENSG00000248848 PPBPP2 PPBPL2|SPBPBP pro-platelet basic protein pseudogene 2 pseudo 258-79 chr12 15419700 15419847 + 3 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 97265 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 666-101 chr5 170283489 170283798 + 3 NA intron (NM_005565, intron 3 of 20) intron (NM_005565, intron 3 of 20) 14134 NM_005565 3937 Hs.304475 NM_005565 ENSG00000043462 LCP2 SLP-76|SLP76 lymphocyte cytosolic protein 2 protein-coding 157-11 chr1 171496536 171496600 + 3 NA intron (NM_015172, intron 1 of 33) L1MC4|LINE|L1 11038 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 356-344 chr4 12040514 12040697 + 3 NA Intergenic Intergenic -182846 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 705-78 chr5 8598447 8598905 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 137751 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 293-302 chr4 66041809 66041989 + 3 NA Intergenic L1MCa|LINE|L1 -234925 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 428-280 chr7 135150790 135150998 + 3 NA intron (NM_018295, intron 1 of 1) Charlie22a|DNA|hAT-Charlie 2822 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 304-343 chr3 87724648 87724773 + 3 NA Intergenic L1M2|LINE|L1 -67996 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 718-67 chr5 12002700 12003093 + 3 NA Intergenic Intergenic -98450 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 415-241 chr6 101959702 101959962 + 3 NA intron (NM_001166247, intron 13 of 16) L1PB4|LINE|L1 560847 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 565-195 chr9 91635426 91635712 + 3 NA promoter-TSS (NR_037472) promoter-TSS (NR_037472) -682 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 516-274 chr9 120094119 120094332 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 150825 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 483-94 chr18 9003177 9003382 + 3 NA Intergenic L1MEi|LINE|L1 -99420 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 988-8 chr14 78662543 78663277 + 3 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 259191 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 460-46 chr11 50380402 50380680 + 3 NA Intergenic ALR/Alpha|Satellite|centr -28606 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 557-53 chr14 61447034 61447276 + 3 NA intron (NM_006255, intron 4 of 13) L1MC|LINE|L1 123039 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 296-444 chr7 85655079 85655218 + 3 NA Intergenic Intergenic 234026 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 588-25 chr11 124169327 124169773 + 3 NA Intergenic Intergenic -15666 NM_001355213 26497 Hs.538726 NM_001355213 ENSG00000197309 OR10D3 HTPCRX09|OR10D3P olfactory receptor family 10 subfamily D member 3 (putative) protein-coding 487-69 chr12 82788291 82788719 + 3 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 101350 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 498-145 chr2 221112851 221113063 + 3 NA Intergenic MER58B|DNA|hAT-Charlie 459347 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 892-36 chr8 62807902 62808330 + 3 NA intron (NM_001304533, intron 4 of 6) L1MEd|LINE|L1 -169745 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 576-152 chr6 100934948 100935201 + 3 NA Intergenic L1MB2|LINE|L1 -53702 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 799-27 chr2 63272726 63273253 + 3 NA intron (NR_148704, intron 14 of 18) L1M2|LINE|L1 -153447 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 353-568 chrX 94144584 94144826 + 3 NA Intergenic MLT2B2|LTR|ERVL 470499 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 239-337 chr5 150983348 150983480 + 3 NA Intergenic L1M4a2|LINE|L1 -36830 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 372-465 chr7 105191389 105191584 + 3 NA intron (NM_182692, intron 3 of 15) AluJb|SINE|Alu 77591 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 603-90 chr2 117261991 117262244 + 3 NA Intergenic L1MA9|LINE|L1 -552574 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 274-268 chr3 143376745 143376933 + 3 NA intron (NM_173653, intron 13 of 15) intron (NM_173653, intron 13 of 15) 34593 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 286-327 chr4 166780343 166780542 + 3 NA intron (NM_001204356, intron 6 of 9) L1MCc|LINE|L1 453984 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 775-12 chr10 126163456 126163870 + 3 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) -190390 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 537-190 chr5 21397832 21398188 + 3 NA Intergenic L1M2|LINE|L1 -61470 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 523-116 chr18 71508257 71508465 + 3 NA Intergenic MIRb|SINE|MIR 70595 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 525-285 chrX 47937990 47938364 + 3 NA Intergenic AluJr4|SINE|Alu 65812 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 605-52 chr2 107723316 107723688 + 3 NA Intergenic Intergenic -30610 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 380-23 chr1 165046109 165046309 + 3 NA Intergenic Intergenic -271568 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 899-14 chr2 63285817 63286318 + 3 NA intron (NR_148704, intron 14 of 18) AluJr|SINE|Alu 151940 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 349-6 chr1 21329602 21329779 + 3 NA intron (NM_001113348, intron 1 of 18) intron (NM_001113348, intron 1 of 18) 15814 NM_001113348 1889 Hs.195080 NM_001397 ENSG00000117298 ECE1 ECE endothelin converting enzyme 1 protein-coding 455-299 chr9 73775368 73775634 + 3 NA Intergenic Intergenic -596030 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 492-161 chr21 27328689 27328961 + 3 NA Intergenic Intergenic -361737 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 506-40 chr10 81230012 81230320 + 3 NA Intergenic Intergenic 580369 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 435-41 chr10 107062007 107062315 + 3 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 102545 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 384-357 chr7 121171128 121171286 + 3 NA intron (NM_001105533, intron 15 of 17) intron (NM_001105533, intron 15 of 17) -154160 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 638-26 chr11 70512319 70512781 + 3 NA intron (NM_133266, intron 2 of 10) HAL1|LINE|L1 114021 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 448-122 chr2 134557107 134557325 + 3 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 161784 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 384-57 chr11 49926906 49927050 + 3 NA Intergenic Intergenic -25413 NM_001001955 283092 Hs.553668 NM_001001955 ENSG00000258817 OR4C13 - olfactory receptor family 4 subfamily C member 13 protein-coding 591-153 chr7 26527624 26528034 + 3 NA intron (NR_148500, intron 5 of 5) intron (NR_148500, intron 5 of 5) 10996 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 791-23 chr14 78479007 78479435 + 3 NA intron (NM_004796, intron 1 of 16) MER5B|DNA|hAT-Charlie 75502 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 451-168 chr4 160620247 160620454 + 3 NA Intergenic L2|LINE|L2 -842566 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 566-195 chr8 115721304 115721585 + 3 NA Intergenic Intergenic -52469 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 511 chr1 17951271 17951631 + 3 NA Intergenic MIR|SINE|MIR -114206 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 413-60 chr12 14013602 14013818 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -33354 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 382-188 chr2 51834861 51835074 + 3 NA intron (NR_135237, intron 6 of 10) L1MC5a|LINE|L1 -535681 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 405-75 chr13 35936237 35936411 + 3 NA intron (NM_001330071, intron 4 of 16) LTR78|LTR|ERV1 -80463 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 541-159 chr3 111296801 111297139 + 3 NA Intergenic L1MA3|LINE|L1 225154 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 705-51 chr2 64885939 64886273 + 3 NA Intergenic L1MB7|LINE|L1 -22475 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 464-76 chr15 81960202 81960423 + 3 NA Intergenic MIR|SINE|MIR 85706 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 990 chr1 15399616 15400062 + 3 NA Intergenic Intergenic -10049 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 802-27 chr19 9342971 9343335 + 3 NA 3' UTR (NM_032497, exon 7 of 7) 3' UTR (NM_032497, exon 7 of 7) 18458 NM_001202425 100529215 Hs.728944 NM_001172650 ENSG00000270011 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 782-30 chr2 116585652 116586139 + 3 NA Intergenic Intergenic -1228796 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 319-425 chr5 120246066 120246286 + 3 NA Intergenic Intergenic -218102 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 384-173 chr2 100867317 100867537 + 3 NA intron (NM_002518, intron 1 of 20) L1MEd|LINE|L1 47288 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 585-146 chr7 9363219 9363545 + 3 NA Intergenic Intergenic -270888 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 505-106 chr16 62676904 62677098 + 3 NA Intergenic LTR8A|LTR|ERV1 -640563 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 495-165 chr3 176899222 176899567 + 3 NA Intergenic L2a|LINE|L2 -82393 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 729-48 chr22 47602431 47602778 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 28965 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 283-323 chr4 61337766 61337908 + 3 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 135665 NM_001371342 479-45 chr12 95935018 95935228 + 3 NA intron (NM_182496, intron 2 of 15) L1ME4b|LINE|L1 7491 NM_182496 120935 Hs.210377 NM_182496 ENSG00000165972 CCDC38 - coiled-coil domain containing 38 protein-coding 459-68 chr12 114086121 114086374 + 3 NA Intergenic Intergenic -119922 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 622-41 chr17 53944744 53945051 + 3 NA Intergenic L1MC1|LINE|L1 121970 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 959-17 chr2 67993029 67993548 + 3 NA Intergenic Intergenic 69716 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 312-156 chr14 82255534 82255685 + 3 NA Intergenic L1ME3G|LINE|L1 -387023 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 662-36 chr18 1993114 1993541 + 3 NA Intergenic L1ME1|LINE|L1 578178 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 262-465 chrX 101521920 101522105 + 3 NA intron (NR_045864, intron 11 of 12) L1M4|LINE|L1 -28535 NM_016608 51309 Hs.9728 NM_016608 ENSG00000126947 ARMCX1 ALEX1|GASP7 armadillo repeat containing X-linked 1 protein-coding 462-125 chr19 46550958 46551223 + 3 NA intron (NM_001370550, intron 1 of 2) L1MEg|LINE|L1 49826 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 389-359 chr8 72141382 72141646 + 3 NA Intergenic Intergenic -65930 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 368-427 chr7 68129603 68129764 + 3 NA Intergenic Intergenic 109430 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 389-104 chr14 71901586 71901809 + 3 NA Intergenic Intergenic -30474 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 730-12 chr11 128742344 128742736 + 3 NA intron (NM_002017, intron 1 of 8) MER3|DNA|hAT-Charlie -46517 NR_038908 100507392 Hs.657715 NR_038908 ENSG00000254703 SENCR FLI1-AS1|lncRNA9 smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA ncRNA 564-21 chr10 115843571 115843778 + 3 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 351115 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 414-338 chr8 131656620 131656916 + 3 NA Intergenic Intergenic -247325 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 510-284 chr8 130958260 130958477 + 3 NA intron (NM_001115, intron 2 of 17) L2a|LINE|L2 82541 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 398-393 chrX 65918572 65918835 + 3 NA Intergenic L1PB1|LINE|L1 -100167 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 543-180 chr4 42753797 42753987 + 3 NA Intergenic Intergenic -96787 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 1209-8 chr8 77546845 77547492 + 3 NA Intergenic L1PA16|LINE|L1 96471 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 389-231 chr3 85729706 85729907 + 3 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 3324 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 488-272 chr8 109933786 109933958 + 3 NA Intergenic AluSz|SINE|Alu 41899 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 330-41 chr1 216154549 216154722 + 3 NA intron (NM_206933, intron 21 of 71) L1ME1|LINE|L1 82170 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 373-82 chr11 114939552 114939765 + 3 NA Intergenic LTR85a|LTR|Gypsy? 261131 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 566-164 chr6 22365003 22365359 + 3 NA Intergenic Intergenic -62346 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 580-119 chr3 118039649 118039904 + 3 NA Intergenic Intergenic -348851 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 532-199 chr5 5873089 5873360 + 3 NA Intergenic L1MEg|LINE|L1 450547 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 708-41 chr20 7263951 7264460 + 3 NA Intergenic Intergenic -10003 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 878-22 chr19 28985337 28985867 + 3 NA Intergenic Intergenic -16953 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 315-236 chr2 63157983 63158182 + 3 NA intron (NR_148704, intron 16 of 18) L1ME1|LINE|L1 -38540 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 537-21 chr10 25273946 25274280 + 3 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -97837 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 716-56 chr4 93699137 93699497 + 3 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -129436 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 459-265 chr6 140530582 140530782 + 3 NA Intergenic Intergenic -153132 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 277-436 chr8 134240266 134240432 + 3 NA Intergenic Intergenic 353853 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 575-49 chr14 37817996 37818339 + 3 NA intron (NM_001368142, intron 8 of 12) intron (NM_001368142, intron 8 of 12) 45784 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 568-58 chr15 24083029 24083282 + 3 NA intron (NR_126392, intron 4 of 5) ERVL-B4-int|LTR|ERVL 86793 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 953-12 chr19 29100795 29101287 + 3 NA Intergenic LTR40b|LTR|ERVL 98486 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 232-13 chr1 113012586 113012705 + 3 NA non-coding (NR_103777, exon 3 of 3) non-coding (NR_103777, exon 3 of 3) 56230 NR_103743 100506392 Hs.418285 NR_103743 ENSG00000226419 SLC16A1-AS1 - SLC16A1 antisense RNA 1 ncRNA 431-69 chr12 82776375 82776611 + 3 NA intron (NM_001320321, intron 1 of 10) AluJb|SINE|Alu 89338 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 528-65 chr12 84096577 84096779 + 3 NA Intergenic Intergenic 816121 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 339-245 chr2 27900217 27900369 + 3 NA intron (NM_199193, intron 3 of 13) intron (NM_199193, intron 3 of 13) -9179 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 262-108 chr13 69369460 69369555 + 3 NA Intergenic L1PA16|LINE|L1 147161 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 337-418 chr4 164487819 164487982 + 3 NA Intergenic Intergenic -104645 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 915-10 chr2 115564827 115565403 + 3 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 221300 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 780-29 chr2 171375362 171375828 + 3 NA intron (NM_001321158, intron 1 of 8) L1ME1|LINE|L1 58395 NM_001321154 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 448-84 chr14 65201561 65201859 + 3 NA Intergenic Intergenic 20637 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 936-32 chr7 127450161 127450659 + 3 NA Intergenic L1PA15-16|LINE|L1 -26473 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 497-170 chr3 30963269 30963510 + 3 NA Intergenic Intergenic -68728 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 191-113 chr2 182793265 182793395 + 3 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 73307 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 430-164 chr2 160640458 160640706 + 3 NA Intergenic L1MB8|LINE|L1 -146775 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 523-229 chr5 141257195 141257518 + 3 NA Intergenic L1MEf|LINE|L1 11961 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 645-2 chr1 10893190 10893485 + 3 NA Intergenic L2a|LINE|L2 73350 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 540-48 chr12 23849286 23849562 + 3 NA intron (NM_001330785, intron 2 of 14) MIR|SINE|MIR 100246 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 429-188 chr3 38990626 38990901 + 3 NA intron (NM_001349253, intron 2 of 29) MIR|SINE|MIR -40202 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 595-126 chr4 139777234 139777528 + 3 NA intron (NM_018717, intron 2 of 4) L2b|LINE|L2 111562 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 398-237 chr4 32608173 32608318 + 3 NA Intergenic L1PA16|LINE|L1 257207 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 356-284 chr20 37473210 37473452 + 3 NA Intergenic MIR1_Amn|SINE|MIR 46972 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 743-80 chr7 53894152 53894531 + 3 NA Intergenic Intergenic -82410 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 271-216 chr2 185604416 185604554 + 3 NA Intergenic Intergenic 134234 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 473-278 chr8 107415566 107415820 + 3 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -79178 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 532-60 chr13 69676662 69676983 + 3 NA Intergenic MER21C|LTR|ERVL -430391 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 509-61 chr12 128376047 128376233 + 3 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 82048 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 370-28 chr1 244937336 244937550 + 3 NA Intergenic Intergenic -32426 NM_032328 84288 Hs.134857 NM_032328 ENSG00000203666 EFCAB2 CFAP200|DRC8 EF-hand calcium binding domain 2 protein-coding 507-237 chr7 97222339 97222512 + 3 NA Intergenic Intergenic 105832 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 683-72 chr6 62902222 62902472 + 3 NA Intergenic Intergenic 417630 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 500-27 chr10 55693276 55693612 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -65502 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 483-6 chr1 71744471 71744785 + 3 NA intron (NM_173808, intron 3 of 6) LTR49-int|LTR|ERV1 92384 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 815-20 chr16 63467474 63468020 + 3 NA Intergenic Intergenic -1431309 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 550-2 chr1 14059052 14059332 + 3 NA Intergenic MLT2B3|LTR|ERVL 309777 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 742-48 chr21 29583997 29584385 + 3 NA intron (NM_000830, intron 12 of 16) intron (NM_000830, intron 12 of 16) -11849 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 740-22 chr12 16402810 16403366 + 3 NA Intergenic L1MEd|LINE|L1 49671 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 584-16 chr1 238189773 238190039 + 3 NA Intergenic Intergenic 296111 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 487-48 chr10 116187606 116187817 + 3 NA intron (NM_145793, intron 3 of 8) Tigger19a|DNA|TcMar-Tigger 7078 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 446-49 chr10 68844575 68844815 + 3 NA intron (NM_152709, intron 1 of 3) L1MC|LINE|L1 17158 NM_001130159 219736 Hs.37636 NM_152709 ENSG00000165730 STOX1 C10orf24 storkhead box 1 protein-coding 393-244 chr4 91188962 91189190 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 954045 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 490-21 chr1 164251985 164252222 + 3 NA Intergenic L1MC4|LINE|L1 -307257 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 449-173 chr3 113364416 113364612 + 3 NA intron (NM_001164496, intron 19 of 34) intron (NM_001164496, intron 19 of 34) -39484 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 427-128 chr2 150302490 150302717 + 3 NA Intergenic L1ME3|LINE|L1 -45596 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 459-230 chr5 24687965 24688239 + 3 NA Intergenic L1MA2|LINE|L1 -43124 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 352-46 chr10 57458856 57459082 + 3 NA Intergenic Intergenic -154410 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 377-221 chr2 142184905 142185050 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -53276 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 438-266 chr8 33951180 33951387 + 3 NA Intergenic L1M2a1|LINE|L1 -351177 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 404-213 chr3 70618211 70618390 + 3 NA Intergenic Intergenic -305662 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 470-86 chr15 98043811 98043984 + 3 NA Intergenic Intergenic 40859 NR_146563 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 552-59 chr14 56680238 56680495 + 3 NA Intergenic Intergenic 100568 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 544-174 chr5 35039688 35039921 + 3 NA intron (NM_031900, intron 2 of 13) intron (NM_031900, intron 2 of 13) 8145 NM_001306173 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 403-102 chr14 69547590 69547743 + 3 NA Intergenic Intergenic 27205 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 745-42 chr4 30567570 30568023 + 3 NA Intergenic L1MA6|LINE|L1 -152573 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 550-118 chr2 114387720 114387936 + 3 NA Intergenic Intergenic -54813 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 392-101 chr16 7672480 7672682 + 3 NA intron (NM_145893, intron 10 of 13) AluSz6|SINE|Alu 339736 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 274-162 chr17 40526306 40526414 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -24737 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 471-133 chr2 81236397 81236568 + 3 NA Intergenic Intergenic 230464 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 679-35 chr15 94529746 94530074 + 3 NA Intergenic Intergenic 173980 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 352-229 chr2 46212815 46212968 + 3 NA Intergenic L1M1|LINE|L1 -84516 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 660-32 chr16 13429968 13430355 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -489996 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 471-201 chr4 160928419 160928648 + 3 NA Intergenic LTR33A|LTR|ERVL -1094200 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 422-166 chr20 12897993 12898170 + 3 NA intron (NR_109868, intron 8 of 11) MIR|SINE|MIR 38882 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 347-67 chr11 34375235 34375382 + 3 NA Intergenic L1M4c|LINE|L1 -17298 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 465-56 chr11 105048558 105048837 + 3 NA Intergenic Intergenic -3362 NM_001017534 114769 Hs.348365 NM_052889 ENSG00000204397 CARD16 COP|COP1|PSEUDO-ICE caspase recruitment domain family member 16 protein-coding 484-114 chr2 18092895 18093203 + 3 NA Intergenic L2a|LINE|L2 214382 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 646-57 chr2 36475306 36475564 + 3 NA intron (NM_016441, intron 5 of 16) L1MB7|LINE|L1 119657 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 385-295 chr5 42266700 42266988 + 3 NA Intergenic Intergenic -91499 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 314-412 chr4 33530503 33530694 + 3 NA Intergenic Intergenic 509295 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 465-284 chr8 43793710 43794013 + 3 NA Intergenic ALR/Alpha|Satellite|centr 501419 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 427-126 chr2 128046162 128046312 + 3 NA Intergenic AluSc5|SINE|Alu -18178 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 339-565 chr8 65254604 65254814 + 3 NA Intergenic L1ME3Cz|LINE|L1 -74369 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 253-269 chr3 118017623 118017727 + 3 NA Intergenic Intergenic -326750 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 1143-15 chr5 155736749 155737359 + 3 NA Intergenic MIRb|SINE|MIR -589703 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 416-331 chr8 59233031 59233283 + 3 NA Intergenic Intergenic 113947 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 746-11 chr10 32764553 32764998 + 3 NA intron (NM_001321115, intron 29 of 43) ERVL-B4-int|LTR|ERVL 136697 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 605-18 chr10 120062720 120062921 + 3 NA Intergenic Intergenic 104307 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 516-48 chr12 41816055 41816420 + 3 NA Intergenic MER6A|DNA|TcMar-Tigger 52048 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 638-129 chr5 178923474 178923933 + 3 NA intron (NM_030613, intron 4 of 4) L1M6|LINE|L1 -17495 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 527-205 chr5 29914223 29914495 + 3 NA Intergenic L1PA13|LINE|L1 33799 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 362-292 chr4 32811182 32811377 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 460241 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 500-212 chr4 96573818 96574094 + 3 NA intron (NR_147149, intron 2 of 3) L1MEc|LINE|L1 263253 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 419-238 chr5 144077373 144077548 + 3 NA Intergenic L1PA15|LINE|L1 93199 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 400-313 chr6 145363835 145364119 + 3 NA Intergenic L1ME4b|LINE|L1 322900 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 538-58 chr12 126423190 126423472 + 3 NA intron (NR_147498, intron 2 of 3) HERVL-int|LTR|ERVL -2815 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 433-304 chr9 102155309 102155539 + 3 NA Intergenic AluJr|SINE|Alu -364213 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 375-132 chr14 83861421 83861715 + 3 NA Intergenic Intergenic 1218936 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 842-38 chr5 61997367 61997751 + 3 NA Intergenic MIR|SINE|MIR -261861 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 582-79 chr2 156925109 156925397 + 3 NA Intergenic MER6A|DNA|TcMar-Tigger -332452 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 611-148 chr8 92595185 92595456 + 3 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 60174 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 339-277 chr2 135371711 135371877 + 3 NA intron (NM_001286569, intron 3 of 21) MLT1A0|LTR|ERVL-MaLR 158791 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 507-137 chr2 134509273 134509511 + 3 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 209608 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 478-202 chr4 17463443 17463673 + 3 NA Intergenic (GATA)n|Simple_repeat|Simple_repeat 48532 NM_000320 5860 Hs.75438 NM_000320 ENSG00000151552 QDPR DHPR|HDHPR|PKU2|SDR33C1 quinoid dihydropteridine reductase protein-coding 674-19 chr11 92168169 92168680 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -56610 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 651-27 chr11 114020209 114020494 + 3 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -39360 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 346-162 chr15 81994863 81995029 + 3 NA Intergenic L1M1|LINE|L1 51072 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 795-29 chr2 29897375 29897760 + 3 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 24019 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 459-304 chr8 118154770 118154964 + 3 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -43048 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 653-135 chrX 47974786 47975077 + 3 NA TTS (NM_001007088) TTS (NM_001007088) 29058 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 692-18 chr12 14034386 14034750 + 3 NA Intergenic Intergenic -54212 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 987-16 chr7 61099643 61100004 + 3 NA Intergenic ALR/Alpha|Satellite|centr 2204233 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 492-169 chr3 6645178 6645349 + 3 NA intron (NR_110123, intron 2 of 3) L1ME3Cz|LINE|L1 160186 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 558-235 chr9 119474497 119474715 + 3 NA Intergenic L1MB8|LINE|L1 -105171 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 1040-11 chr2 62739975 62740507 + 3 NA intron (NM_001142615, intron 2 of 22) intron (NM_001142615, intron 2 of 22) 33344 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 578-135 chr5 39259206 39259552 + 3 NA intron (NM_001243093, intron 1 of 18) L1MEi|LINE|L1 11270 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 502-28 chr10 16139769 16140025 + 3 NA Intergenic L1PREC2|LINE|L1 -279364 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 400-372 chrX 44475802 44475999 + 3 NA Intergenic Intergenic 66959 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 608-85 chr20 47056628 47056963 + 3 NA intron (NM_172110, intron 5 of 13) AluJo|SINE|Alu -110172 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 421-95 chr15 98825581 98825742 + 3 NA intron (NM_000875, intron 2 of 20) MER1B|DNA|hAT-Charlie 41235 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 407-314 chr8 20885243 20885457 + 3 NA Intergenic Intergenic -68283 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 777-6 chr10 39247193 39247672 + 3 NA Intergenic ALR/Alpha|Satellite|centr 550836 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 440-93 chr17 71244226 71244411 + 3 NA Intergenic Intergenic -42139 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 376-92 chr13 52825283 52825472 + 3 NA Intergenic L1ME1|LINE|L1 15327 NR_031582 100313778 NR_031582 ENSG00000211579 MIR759 hsa-mir-759 microRNA 759 ncRNA 287-378 chr7 45629037 45629220 + 3 NA intron (NM_001281768, intron 5 of 9) L1ME1|LINE|L1 54760 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 351-449 chr7 51266871 51267009 + 3 NA intron (NM_015198, intron 1 of 12) Charlie21a|DNA|hAT-Charlie 49869 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 434-48 chr11 13198190 13198404 + 3 NA Intergenic L1PA16|LINE|L1 -78355 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 407-352 chrX 55054110 55054319 + 3 NA Intergenic AluSc8|SINE|Alu -20816 NM_001015038 389860 Hs.293317 NM_001015038 ENSG00000238269 PAGE2B CT16.5|GAGEE3|PAGE-2B PAGE family member 2B protein-coding 175-146 chr6 95850381 95850445 + 3 NA Intergenic Intergenic -165561 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 844-38 chr2 119830651 119830980 + 3 NA intron (NM_002830, intron 2 of 26) MSTA|LTR|ERVL-MaLR 70893 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 687-74 chr3 34891804 34892269 + 3 NA intron (NR_110817, intron 2 of 3) MIR|SINE|MIR 501987 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 578-169 chr8 29833395 29833762 + 3 NA Intergenic MER63C|DNA|hAT-Blackjack -5074 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 777-66 chr7 67375249 67375639 + 3 NA Intergenic AluJr|SINE|Alu 39468 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 348-538 chr8 129439189 129439414 + 3 NA intron (NR_130920, intron 1 of 3) L1ME3C|LINE|L1 44841 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 450-17 chr1 210781965 210782190 + 3 NA intron (NM_002238, intron 9 of 10) L2b|LINE|L2 351297 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 736-51 chr3 16727310 16727735 + 3 NA Intergenic Intergenic -122099 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 564-26 chr10 130289192 130289463 + 3 NA Intergenic Intergenic 152918 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 212-84 chr12 63841996 63842087 + 3 NA Intergenic Intergenic -2659 NM_020762 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 530-188 chr5 12618061 12618409 + 3 NA intron (NR_033383, intron 2 of 3) L1PB3|LINE|L1 43378 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 531-17 chr10 5135436 5135849 + 3 NA Intergenic Intergenic 41228 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 525-23 chr10 25998642 25998907 + 3 NA intron (NM_001368265, intron 6 of 7) intron (NM_001368265, intron 6 of 7) 64545 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 215-333 chr9 25475424 25475503 + 3 NA Intergenic Intergenic 203395 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 455-294 chr8 142057607 142057765 + 3 NA Intergenic L1ME4a|LINE|L1 -118653 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 1026 chr1 93789843 93790515 + 3 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -14796 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 402-30 chr10 30252239 30252430 + 3 NA Intergenic L1ME1|LINE|L1 40482 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 546-213 chr6 159569555 159569805 + 3 NA Intergenic MER21C|LTR|ERVL 123561 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 550-171 chr4 154372678 154372926 + 3 NA intron (NM_001358235, intron 2 of 19) (TAGCAG)n|Simple_repeat|Simple_repeat 118997 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 562-121 chr2 181791590 181791806 + 3 NA Intergenic Intergenic -100032 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 422-310 chr9 74057753 74058012 + 3 NA Intergenic L1MEd|LINE|L1 -313649 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 536-83 chr15 97665438 97665627 + 3 NA Intergenic MLT2B5|LTR|ERVL -104834 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 334-170 chr15 49571658 49571823 + 3 NA intron (NM_152647, intron 8 of 15) L1MA7|LINE|L1 49078 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 594-109 chr5 6986871 6987122 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -159075 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 518-135 chr2 99848301 99848600 + 3 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 257133 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 513-68 chr13 107407314 107407567 + 3 NA intron (NM_001080396, intron 1 of 2) L1MA3|LINE|L1 -86477 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 488-167 chr22 47020867 47021134 + 3 NA intron (NM_001284305, intron 10 of 12) MLT1E1|LTR|ERVL-MaLR -104958 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 789-44 chr7 103015313 103015789 + 3 NA intron (NR_105043, intron 7 of 20) AluSz6|SINE|Alu 42121 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 453-257 chr7 50861774 50862052 + 3 NA Intergenic Intergenic -68460 NM_001371008 477-114 chr17 2584404 2584604 + 3 NA Intergenic AluSx3|SINE|Alu -9150 NM_000430 5048 Hs.77318 NM_000430 ENSG00000007168 PAFAH1B1 LIS1|LIS2|MDCR|MDS|NudF|PAFAH platelet activating factor acetylhydrolase 1b regulatory subunit 1 protein-coding 557-150 chr5 8237224 8237552 + 3 NA Intergenic Intergenic 220176 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 492-183 chr4 30039584 30039865 + 3 NA Intergenic Intergenic -680645 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 779-19 chr12 133115429 133115753 + 3 NA Intergenic Intergenic 14882 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 613-56 chr2 51541834 51542160 + 3 NA intron (NR_135237, intron 5 of 10) L1MEg|LINE|L1 509396 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 474-225 chr5 12224758 12224941 + 3 NA Intergenic L1MA3|LINE|L1 -320403 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 363-209 chr2 59397858 59398025 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 180233 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 522-169 chr3 27219034 27219353 + 3 NA intron (NM_199347, intron 24 of 24) MER67C|LTR|ERV1 -2670 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 663-3 chr1 39876094 39876428 + 3 NA intron (NM_017646, intron 1 of 10) intron (NM_017646, intron 1 of 10) 7243 NM_017646 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 808-22 chr18 46124681 46125043 + 3 NA non-coding (NR_026978, exon 7 of 9) non-coding (NR_026978, exon 7 of 9) 20477 NM_138443 115106 Hs.436617 NM_138443 ENSG00000152240 HAUS1 CCDC5|HEI-C|HEIC|HsT1461 HAUS augmin like complex subunit 1 protein-coding 727-71 chr6 100097897 100098193 + 3 NA Intergenic Intergenic -103807 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 582-101 chr3 176876613 176876855 + 3 NA Intergenic L1M1|LINE|L1 -59733 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 579-102 chr3 105307440 105307740 + 3 NA Intergenic L1M3|LINE|L1 -59123 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 447-114 chr2 8670228 8670419 + 3 NA TTS (NR_110154) TTS (NR_110154) 11538 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 749-50 chr2 42102116 42102420 + 3 NA Intergenic Intergenic 54247 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 623-59 chr2 56652807 56653181 + 3 NA Intergenic Intergenic -467224 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 273-152 chr15 100178157 100178340 + 3 NA intron (NM_139057, intron 8 of 21) L1MD2|LINE|L1 163727 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 449-158 chr22 28308013 28308227 + 3 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -151749 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 709-36 chr2 19689163 19689657 + 3 NA Intergenic Intergenic -179444 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 442-177 chr22 49560998 49561291 + 3 NA intron (NR_110523, intron 1 of 4) MLT1A1|LTR|ERVL-MaLR -17678 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 528-47 chr11 15373997 15374232 + 3 NA Intergenic LTR37A|LTR|ERV1 225012 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 650-67 chr20 40340580 40340975 + 3 NA Intergenic Intergenic 336316 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 618-99 chr5 101137002 101137418 + 3 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat -233928 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 775 chr1 68984540 68985015 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR -71121 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 511-224 chr6 40646561 40646877 + 3 NA Intergenic Intergenic -59355 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 403-297 chr8 24170169 24170381 + 3 NA Intergenic L1MCc|LINE|L1 -123765 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 505-281 chr7 11544882 11545106 + 3 NA intron (NM_015204, intron 4 of 26) intron (NM_015204, intron 4 of 26) 287204 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 441-142 chr20 19137675 19137863 + 3 NA Intergenic Intergenic -74873 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 331-517 chr8 34054262 34054460 + 3 NA Intergenic L1PBa|LINE|L1 -454255 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 626-91 chr3 68777639 68777986 + 3 NA intron (NM_001005527, intron 3 of 5) Tigger3a|DNA|TcMar-Tigger 154735 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 496-37 chr10 78683515 78683804 + 3 NA Intergenic MIRb|SINE|MIR 383789 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 258-389 chr8 84310599 84310746 + 3 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -104812 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 497-192 chr4 4806202 4806380 + 3 NA Intergenic L1ME3|LINE|L1 -38146 NR_125765 103695434 Hs.550830 NR_125765 ENSG00000273396 LINC01396 - long intergenic non-protein coding RNA 1396 ncRNA 878-24 chr19 51957243 51957638 + 3 NA intron (NR_103847, intron 1 of 2) ERV24_Prim-int|LTR|ERV1 8306 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 497-144 chr2 214305167 214305360 + 3 NA intron (NR_047660, intron 14 of 14) L1PA13|LINE|L1 -105791 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 667-55 chr20 13542097 13542382 + 3 NA intron (NM_001323602, intron 4 of 9) L1MEd|LINE|L1 96693 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 373-285 chr4 59849657 59849802 + 3 NA Intergenic Intergenic 836156 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 486-234 chr5 4572414 4572593 + 3 NA Intergenic L1MD3|LINE|L1 -200978 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 305-191 chr17 12532014 12532250 + 3 NA Intergenic L1MEd|LINE|L1 -17836 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 562-62 chr15 33268598 33268846 + 3 NA Intergenic L1MA1|LINE|L1 -21167 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 424-142 chr2 143711570 143711742 + 3 NA intron (NM_018460, intron 13 of 13) AluJo|SINE|Alu -225411 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 435-184 chr5 12831210 12831433 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 163462 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 847-42 chr5 125275379 125275975 + 3 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -217584 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 158-77 chr3 131535643 131535736 + 3 NA intron (NM_130808, intron 15 of 15) intron (NM_130808, intron 15 of 15) -32718 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 237-399 chr8 135800716 135800849 + 3 NA Intergenic L1ME3F|LINE|L1 343326 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 895 chr1 42067696 42068090 + 3 NA Intergenic L1ME3Cz|LINE|L1 -31959 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 528-36 chr10 63393475 63393867 + 3 NA intron (NM_001322258, intron 1 of 24) L1M2|LINE|L1 -20623 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 821-54 chr8 112013996 112014347 + 3 NA Intergenic L1ME1|LINE|L1 -629322 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 367-79 chr11 86712998 86713257 + 3 NA Intergenic Intergenic -40491 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 500-278 chr7 111947499 111947835 + 3 NA intron (NM_001363540, intron 8 of 52) intron (NM_001363540, intron 8 of 52) 139162 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 519-173 chr5 41558046 41558348 + 3 NA Intergenic L1MA7|LINE|L1 -47596 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 273-13 chr1 79574718 79574845 + 3 NA Intergenic Intergenic -568051 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 318-561 chr8 134397260 134397400 + 3 NA Intergenic Intergenic -200741 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 657-18 chr11 55022283 55022664 + 3 NA Intergenic ALR/Alpha|Satellite|centr -239682 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 468-199 chr3 75984212 75984477 + 3 NA Intergenic Intergenic -198795 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 720-34 chr16 74828752 74829137 + 3 NA Intergenic AluJb|SINE|Alu -54124 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 429-63 chr12 13547662 13547960 + 3 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -171066 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 326-326 chr3 23314932 23315177 + 3 NA intron (NM_001370225, intron 3 of 5) L1M1|LINE|L1 111727 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 623-4 chr1 40469017 40469323 + 3 NA Intergenic MIR|SINE|MIR -8120 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 382-5 chr1 34357377 34357569 + 3 NA Intergenic Intergenic 180566 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 655-109 chr7 4889669 4890057 + 3 NA Intergenic AluJb|SINE|Alu -6147 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 622-67 chr2 123898189 123898612 + 3 NA Intergenic L1MA4|LINE|L1 126774 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 440-199 chr5 68571552 68571757 + 3 NA Intergenic L1PB1|LINE|L1 279077 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 510-72 chr14 49764633 49764882 + 3 NA Intergenic Intergenic -3396 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 497-296 chr8 141856895 141857195 + 3 NA Intergenic Intergenic -70732 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 642-105 chr8 76550161 76550388 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -130973 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 609-44 chr18 1667662 1667948 + 3 NA Intergenic Intergenic -308176 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 656-82 chr3 161021823 161022050 + 3 NA intron (NM_001317912, intron 3 of 4) L1M4|LINE|L1 82796 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 615-10 chr10 85370721 85371031 + 3 NA Intergenic Intergenic 61896 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 516-59 chr13 28901785 28902057 + 3 NA intron (NM_001366651, intron 2 of 14) L1MD2|LINE|L1 81582 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 371-276 chr4 59507294 59507489 + 3 NA Intergenic Intergenic 493818 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1169-9 chr8 132388080 132388848 + 3 NA intron (NM_004519, intron 1 of 14) L1ME4a|LINE|L1 58798 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 552-95 chr19 44448872 44449147 + 3 NA promoter-TSS (NM_014518) promoter-TSS (NM_014518) -431 NM_001278510 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 508-137 chr21 27634224 27634592 + 3 NA Intergenic Intergenic -87971 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 535-45 chr11 121703862 121704154 + 3 NA Intergenic Intergenic 251694 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 479-30 chr10 116419180 116419455 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie -8530 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 332-253 chr2 82117481 82117623 + 3 NA Intergenic MIR|SINE|MIR -650606 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 414-231 chr4 49063799 49064031 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR 77273 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 489-179 chr3 140523417 140523613 + 3 NA intron (NM_022131, intron 8 of 16) intron (NM_022131, intron 8 of 16) -14726 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 552-8 chr1 119074874 119075167 + 3 NA intron (NM_015836, intron 2 of 5) L1PB4|LINE|L1 27615 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 427-96 chr17 68404799 68404962 + 3 NA intron (NM_001352910, intron 11 of 12) L1M3|LINE|L1 -8743 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 454-250 chr5 15443316 15443577 + 3 NA Intergenic Intergenic -56734 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 359-94 chr11 81231124 81231266 + 3 NA Intergenic MIRb|SINE|MIR -468392 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 409-151 chr2 139470886 139471026 + 3 NA Intergenic MER89|LTR|ERV1 573632 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 499-134 chr2 185975222 185975428 + 3 NA Intergenic Intergenic 110992 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 930-23 chr3 54316586 54316968 + 3 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 194225 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 631-46 chr16 13807810 13808136 + 3 NA Intergenic Intergenic -112184 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 457-72 chr14 82099929 82100212 + 3 NA Intergenic Intergenic -356932 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 472-294 chr7 18082364 18082547 + 3 NA Intergenic L1M3e|LINE|L1 -4370 NM_001321871 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 539-59 chr13 34978980 34979217 + 3 NA intron (NM_015678, intron 1 of 57) L1ME2z|LINE|L1 36811 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 891-45 chr9 137825509 137826143 + 3 NA intron (NM_001354263, intron 25 of 26) intron (NM_001354263, intron 25 of 26) -12593 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 430-332 chr9 68742149 68742400 + 3 NA intron (NM_001278253, intron 1 of 13) Tigger16a|DNA|TcMar-Tigger 36860 NM_001278253 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 381-108 chr14 72206810 72207044 + 3 NA intron (NM_001370288, intron 2 of 16) L1ME3G|LINE|L1 273400 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 577-119 chr3 68689097 68689407 + 3 NA Intergenic L1MB4|LINE|L1 188615 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 610-169 chr8 31337642 31337971 + 3 NA Intergenic Intergenic -301946 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 619-10 chr1 163939157 163939537 + 3 NA Intergenic AluJr|SINE|Alu -516156 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 632-114 chr8 26907453 26907818 + 3 NA Intergenic L1M3b|LINE|L1 -40357 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 416-325 chr8 36437015 36437188 + 3 NA Intergenic L2c|LINE|L2 -347273 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 587-63 chr17_GL000205v2_random 44138 44534 + 3 NA Intergenic MER49|LTR|ERV1 13630 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 457-34 chr10 129770671 129770871 + 3 NA 3' UTR (NM_002412, exon 5 of 5) 3' UTR (NM_002412, exon 5 of 5) 72603 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 323-480 chr7 13776245 13776470 + 3 NA Intergenic Intergenic 210157 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 591-60 chr18 35596430 35596752 + 3 NA Intergenic Intergenic 4854 NR_039771 100616257 NR_039771 ENSG00000283514 MIR3975 - microRNA 3975 ncRNA 650-43 chr19 29154805 29155150 + 3 NA Intergenic Intergenic 58174 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 586-49 chr14 53741067 53741397 + 3 NA Intergenic Intergenic 207252 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 659-96 chr6 91553261 91553723 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 31832 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 834-48 chr8 65856139 65856624 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -14317 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 507-72 chr13 37956322 37956640 + 3 NA Intergenic Intergenic -86056 NM_001354806 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 453-149 chr22 32962829 32963002 + 3 NA intron (NM_003490, intron 3 of 13) (TA)n|Simple_repeat|Simple_repeat 43906 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 345-500 chr7 87493770 87493944 + 3 NA Intergenic LTR33|LTR|ERVL -18154 NM_018850 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 576-9 chr1 208702095 208702355 + 3 NA Intergenic L1ME2|LINE|L1 -26463 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 474-17 chr1 174404468 174404678 + 3 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -43391 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 1028-3 chr12 105638465 105639043 + 3 NA Intergenic (CTTAAT)n|Simple_repeat|Simple_repeat -65449 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 451-30 chr10 81607564 81607743 + 3 NA Intergenic Intergenic -267541 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 494-283 chr8 57946935 57947208 + 3 NA Intergenic L1PA15-16|LINE|L1 -31287 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 527-29 chr10 55212961 55213286 + 3 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -385919 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 473-212 chr5 42075006 42075286 + 3 NA Intergenic L1MB8|LINE|L1 100199 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 552-211 chr8 105734925 105735316 + 3 NA intron (NM_001362837, intron 5 of 7) (AT)n|Simple_repeat|Simple_repeat 325383 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 443-108 chr15 81867842 81867998 + 3 NA Intergenic Intergenic 178098 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 267-205 chr2 126412573 126412727 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -243285 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 704-12 chr11 37675423 37675745 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -263017 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 364-460 chr8 134082511 134082756 + 3 NA Intergenic Intergenic 196137 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 446-2 chr1 13695649 13695872 + 3 NA Intergenic Intergenic -4428 NM_001135610 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 501-68 chr14 68228454 68228825 + 3 NA intron (NM_133509, intron 7 of 10) L2a|LINE|L2 400148 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 556-44 chr12 2441339 2441562 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 171674 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 589-169 chr9 115380973 115381327 + 3 NA intron (NR_163556, intron 5 of 7) THE1A-int|LTR|ERVL-MaLR 239332 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 704-26 chr14 66442703 66443046 + 3 NA Intergenic Intergenic -43497 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 982-26 chr8 32941290 32941880 + 3 NA Intergenic L1M2|LINE|L1 219750 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 357-256 chr22 33628099 33628297 + 3 NA intron (NM_133642, intron 3 of 14) MIR|SINE|MIR 76722 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 1027-5 chr15 69570995 69571705 + 3 NA TTS (NR_026979) TTS (NR_026979) 9630 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 497-281 chr8 88631797 88631979 + 3 NA Intergenic Intergenic -304405 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 511-163 chr3 6560598 6560834 + 3 NA Intergenic Intergenic 244733 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 825-23 chr2 185240515 185240887 + 3 NA Intergenic L1ME1|LINE|L1 -73629 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 244-384 chr9 30286245 30286350 + 3 NA Intergenic Intergenic 122157 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 265-195 chr2 146319499 146319627 + 3 NA Intergenic Intergenic -267494 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 407-93 chr15 96122593 96122754 + 3 NA intron (NR_158193, intron 2 of 7) (TA)n|Simple_repeat|Simple_repeat 5168 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 239-50 chr11 5523795 5523925 + 3 NA Intergenic Intergenic -2075 NR_133006 101927763 NR_133006 OLFM5P - olfactomedin family member 5, pseudogene pseudo 477-56 chr11 37822035 37822307 + 3 NA Intergenic Intergenic -116430 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 653-57 chr19 28764837 28765139 + 3 NA Intergenic L1PBa|LINE|L1 -37294 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 1072-4 chr14 43000151 43000719 + 3 NA Intergenic L3|LINE|CR1 1393579 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 511-109 chr2 12394686 12394960 + 3 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 195693 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 321-283 chr2 49025497 49025705 + 3 NA intron (NM_000145, intron 2 of 9) intron (NM_000145, intron 2 of 9) -34002 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 382-126 chr15 96607737 96608052 + 3 NA Intergenic Intergenic 173760 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 546-217 chr7 27075792 27076096 + 3 NA Intergenic FLAM_A|SINE|Alu 20056 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 618-69 chr2 187813642 187814033 + 3 NA Intergenic Intergenic -259332 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 472-67 chr12 126902647 126902847 + 3 NA Intergenic Intergenic -28057 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 397-165 chr2 112334356 112334583 + 3 NA 3' UTR (NM_198581, exon 12 of 12) 3' UTR (NM_198581, exon 12 of 12) 58872 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 491-154 chr21 29224257 29224427 + 3 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 30848 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 478-84 chr14 72075442 72075630 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 142009 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 261-303 chr5 10910062 10910188 + 3 NA Intergenic L1ME4c|LINE|L1 -148891 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 327-470 chr7 99922109 99922282 + 3 NA Intergenic L1MCa|LINE|L1 -2665 NM_033091 89122 Hs.50749 NM_033017 ENSG00000146833 TRIM4 RNF87 tripartite motif containing 4 protein-coding 438-37 chr10 82006813 82007023 + 3 NA intron (NR_163253, intron 2 of 10) L1ME3Cz|LINE|L1 129231 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 401-69 chr12 90885706 90885921 + 3 NA Intergenic L2a|LINE|L2 -32210 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 424-104 chr17 72477288 72477547 + 3 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 115387 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 532 chr1 43460179 43460516 + 3 NA Intergenic Intergenic -6358 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 412-201 chr22 46431254 46431430 + 3 NA intron (NM_014246, intron 5 of 34) intron (NM_014246, intron 5 of 34) 95628 NM_001282782 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 477-153 chr2 80004330 80004527 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -137845 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 360-296 chr3 21564882 21565128 + 3 NA intron (NM_024697, intron 2 of 7) intron (NM_024697, intron 2 of 7) 22216 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 491-171 chr3 104169817 104170007 + 3 NA Intergenic LTR80B|LTR|ERVL -645796 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 359-62 chr10 65024007 65024149 + 3 NA Intergenic L1MC|LINE|L1 -99560 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 500-195 chr3 168532452 168532628 + 3 NA intron (NR_021485, intron 4 of 15) MER57E2|LTR|ERV1 -19314 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 480-11 chr1 90697487 90697777 + 3 NA Intergenic Intergenic 19670 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 505-274 chr6 123281537 123281816 + 3 NA intron (NM_006073, intron 24 of 40) intron (NM_006073, intron 24 of 40) -157928 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 513-92 chr15 100814692 100814982 + 3 NA Intergenic LTR39|LTR|ERV1 -34915 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 645-107 chr6 76190142 76190384 + 3 NA Intergenic Intergenic -117585 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 806-33 chr2 236269221 236269539 + 3 NA Intergenic MIR|SINE|MIR -5035 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 563-167 chr7 4899215 4899534 + 3 NA intron (NR_072989, intron 8 of 8) intron (NR_072989, intron 8 of 8) -15658 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 415-128 chr2 112997892 112998089 + 3 NA Intergenic Intergenic -7469 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 524-246 chr7 146734491 146734749 + 3 NA Intergenic Intergenic -39651 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 526-138 chr2 133587999 133588257 + 3 NA Intergenic Charlie9|DNA|hAT-Charlie -19665 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 623-135 chr9 99665573 99665834 + 3 NA intron (NR_109802, intron 3 of 6) L2a|LINE|L2 154186 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 553 chr1 2845594 2845871 + 3 NA Intergenic L1ME3A|LINE|L1 -44864 NM_001242672 100287898 Hs.632363 NM_001242672 ENSG00000215912 TTC34 - tetratricopeptide repeat domain 34 protein-coding 743-42 chr2 128030936 128031250 + 3 NA Intergenic L2c|LINE|L2 -3034 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 283-203 chr18 72102691 72102809 + 3 NA Intergenic Intergenic -320524 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 593-109 chr4 86296561 86296957 + 3 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 57885 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 612-119 chr5 153920455 153920811 + 3 NA Intergenic L2c|LINE|L2 -21646 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 482-155 chr22 33932950 33933221 + 3 NA Intergenic L1M6|LINE|L1 -10197 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 513-249 chr6 85275859 85276153 + 3 NA Intergenic L1PA15|LINE|L1 114180 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 514-43 chr10 127628351 127628690 + 3 NA Intergenic L1MA4A|LINE|L1 79171 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 473-32 chr10 65611004 65611244 + 3 NA intron (NR_120647, intron 2 of 5) intron (NR_120647, intron 2 of 5) 39699 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 538-102 chr2 6474288 6474509 + 3 NA Intergenic Intergenic -98976 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 598-41 chr13 108554127 108554502 + 3 NA Intergenic Intergenic -41591 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 513-225 chr5 97086539 97086830 + 3 NA Intergenic Intergenic 55927 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 675-17 chr11 96472140 96472500 + 3 NA intron (NR_047481, intron 1 of 4) L1MA4A|LINE|L1 34557 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 401-292 chr6 145385152 145385347 + 3 NA Intergenic Intergenic 301628 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 727-96 chr9 138041449 138041723 + 3 NA non-coding (NR_121582, exon 3 of 3) non-coding (NR_121582, exon 3 of 3) 3485 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 552-121 chr20 33030671 33030894 + 3 NA promoter-TSS (NM_174897) promoter-TSS (NM_174897) -866 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 724-20 chr16 24391675 24391994 + 3 NA Intergenic Intergenic 136281 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 487-207 chr4 61752237 61752551 + 3 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 409371 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 478-302 chr8 136219436 136219645 + 3 NA Intergenic Intergenic -311258 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 952-19 chr3 34790647 34791252 + 3 NA Intergenic Intergenic 603074 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 700-84 chr5 101504930 101505306 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -601836 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 289-266 chr20 45523269 45523508 + 3 NA Intergenic LTR33|LTR|ERVL -7766 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 515-166 chr3 104603295 104603507 + 3 NA Intergenic Intergenic -763312 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 592-114 chr3 111242041 111242334 + 3 NA Intergenic MER52A|LTR|ERV1 170371 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 481-75 chr13 36975430 36975633 + 3 NA intron (NM_013338, intron 6 of 9) intron (NM_013338, intron 6 of 9) 23809 NM_013338 29880 Hs.507769 NM_013338 ENSG00000120697 ALG5 bA421P11.2 ALG5 dolichyl-phosphate beta-glucosyltransferase protein-coding 526-169 chr3 68383965 68384272 + 3 NA intron (NM_001252216, intron 2 of 4) L1PREC2|LINE|L1 -116519 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 462-252 chr6 112767362 112767545 + 3 NA Intergenic MER68|LTR|ERVL 420123 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 466-75 chr14 58895453 58895728 + 3 NA intron (NR_110547, intron 2 of 5) intron (NR_110547, intron 2 of 5) 67302 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 374-184 chr2 59682373 59682507 + 3 NA Intergenic MER58B|DNA|hAT-Charlie 464732 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 418-294 chr8 121279528 121279766 + 3 NA Intergenic MIRb|SINE|MIR -359699 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 308-200 chr18 47366606 47366743 + 3 NA intron (NR_147192, intron 1 of 2) L1MA5|LINE|L1 -13822 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 380-361 chr7 33794756 33795012 + 3 NA Intergenic Intergenic -110031 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 324-172 chr14 86622204 86622388 + 3 NA Intergenic MER20|DNA|hAT-Charlie -283482 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 603-21 chr11 16687754 16688094 + 3 NA intron (NM_001367872, intron 2 of 16) L1MEc|LINE|L1 50553 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 946-14 chr3 88672990 88673401 + 3 NA Intergenic Intergenic 334739 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 1163 chr11 34072403 34073060 + 3 NA intron (NM_005898, intron 4 of 18) intron (NM_005898, intron 4 of 18) 21000 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 706-54 chr5 12293760 12294119 + 3 NA Intergenic Intergenic -280918 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 502-146 chr2 134230421 134230738 + 3 NA intron (NM_001371457, intron 1 of 16) L1MA5A|LINE|L1 -23493 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 547-28 chr10 121650111 121650348 + 3 NA Intergenic Intergenic -51771 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 562-170 chr5 27677277 27677607 + 3 NA Intergenic Intergenic 205150 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 442 chr1 29020525 29020796 + 3 NA intron (NM_001166007, intron 7 of 17) intron (NM_001166007, intron 7 of 17) 101841 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 659-18 chr11 101081456 101081737 + 3 NA intron (NR_073142, intron 2 of 6) L1PA16|LINE|L1 47467 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 227-324 chr6 139650432 139650522 + 3 NA Intergenic L2a|LINE|L2 -120596 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 587-169 chr8 126074758 126075102 + 3 NA Intergenic Intergenic -123733 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 369-306 chr4 161874908 161875054 + 3 NA intron (NM_001128428, intron 4 of 14) intron (NM_001128428, intron 4 of 14) -147752 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 438-139 chr2 226162323 226162514 + 3 NA intron (NR_046102, intron 2 of 6) intron (NR_046102, intron 2 of 6) 19624 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 650-130 chr8 122391414 122391683 + 3 NA Intergenic Intergenic 177096 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 494-148 chr20 6600075 6600416 + 3 NA Intergenic Intergenic 135891 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 522-252 chr8 99463309 99463600 + 3 NA intron (NM_017890, intron 23 of 61) intron (NM_017890, intron 23 of 61) 73276 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 477-156 chr2 98018374 98018544 + 3 NA Intergenic AluSp|SINE|Alu -22511 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 505-255 chr5 156173694 156173942 + 3 NA Intergenic Intergenic -152939 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 308-102 chr12 22765324 22765516 + 3 NA Intergenic Intergenic 140249 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 546-170 chr4 59085028 59085388 + 3 NA Intergenic Intergenic 71635 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 302-172 chr17 62958659 62958865 + 3 NA Intergenic Intergenic -7473 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 329-376 chr3 103090579 103090837 + 3 NA Intergenic L1MA2|LINE|L1 433408 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 394-163 chr2 52855134 52855358 + 3 NA Intergenic Intergenic -152631 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 892-42 chr9 118207025 118207563 + 3 NA Intergenic Intergenic -472377 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 387-407 chrX 123200181 123200425 + 3 NA intron (NM_007325, intron 2 of 15) intron (NM_007325, intron 2 of 15) 16025 NM_001256743 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 833-41 chr8 139848231 139848659 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -145322 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 267-440 chr8 140249472 140249563 + 3 NA intron (NM_001160372, intron 16 of 22) L1MC4|LINE|L1 -148982 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 592-26 chr11 85367564 85367988 + 3 NA intron (NM_001142699, intron 3 of 27) MIR|SINE|MIR 259494 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 554-180 chr5 156433918 156434235 + 3 NA intron (NM_001128209, intron 2 of 7) MLT1K|LTR|ERVL-MaLR 106912 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 759-19 chr13 109399260 109399740 + 3 NA Intergenic LTR12B|LTR|ERV1 -1196 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 619-61 chr18 5149411 5149773 + 3 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 47665 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 437-185 chr4 12382878 12383119 + 3 NA Intergenic L1PA10|LINE|L1 159547 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 536-72 chr14 51879184 51879495 + 3 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 18727 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 424-291 chr9 34535798 34536029 + 3 NA Intergenic L2|LINE|L2 -12923 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 228-208 chr22 48236681 48236853 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -37597 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 610-65 chr16 74011361 74011580 + 3 NA Intergenic Intergenic 204051 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 118-53 chr7 27536346 27536400 + 3 NA intron (NM_152740, intron 6 of 7) intron (NM_152740, intron 6 of 7) -79601 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 806-49 chr5 125958525 125958950 + 3 NA Intergenic Intergenic -220840 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 385-327 chr6 49932902 49933145 + 3 NA Intergenic L1ME3A|LINE|L1 16421 NR_163261 403339 Hs.745543 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 pseudo 862-15 chr15 94685590 94686067 + 3 NA Intergenic Intergenic -169535 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 528-172 chr3 197875975 197876303 + 3 NA intron (NM_001365717, intron 19 of 19) L1MD3|LINE|L1 73786 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 414-30 chr10 72429370 72429626 + 3 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) -74579 NM_001365080 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 411-63 chr11 114657537 114657753 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie -20882 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 627-70 chr3 40756081 40756510 + 3 NA Intergenic Intergenic 231335 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 909 chr1 48904188 48904556 + 3 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -127403 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 432-174 chr3 76288724 76288920 + 3 NA Intergenic L1PA15|LINE|L1 -503273 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 700-44 chr19 36786948 36787352 + 3 NA Intergenic AluJo|SINE|Alu -10400 NR_040027 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 822-68 chr9 31961959 31962425 + 3 NA Intergenic L1PA11|LINE|L1 -422411 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 351-344 chr4 54744103 54744254 + 3 NA Intergenic MER53|DNA|hAT 86250 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 529-50 chr12 66255350 66255592 + 3 NA TTS (NM_001142523) TTS (NM_001142523) 4389 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 298-224 chr2 103988883 103989122 + 3 NA Intergenic L1MD2|LINE|L1 419330 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 841-22 chr3 26790939 26791291 + 3 NA Intergenic L1MA1|LINE|L1 96558 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 344-136 chr14 65138083 65138231 + 3 NA Intergenic Intergenic -35462 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 450-178 chr21 32148478 32148679 + 3 NA Intergenic L1MEf|LINE|L1 -62283 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 1052-2 chr11 8577868 8578516 + 3 NA intron (NM_001289058, intron 1 of 13) intron (NM_001289058, intron 1 of 13) 15784 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 426-212 chr4 135054248 135054423 + 3 NA Intergenic Intergenic 69224 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 424-232 chr5 162969535 162969798 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -467905 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 372-30 chr1 196005344 196005563 + 3 NA Intergenic Intergenic 83262 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 685-32 chr16 35725999 35726401 + 3 NA Intergenic HSAT4|Satellite|centr -20352 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 763-49 chr4 103256823 103257204 + 3 NA Intergenic Intergenic -58670 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 594-92 chr3 89784665 89785071 + 3 NA Intergenic Intergenic 677247 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 446-183 chr3 44153209 44153468 + 3 NA Intergenic L1ME1|LINE|L1 39126 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 854-28 chr22 33495679 33496255 + 3 NA intron (NM_133642, intron 6 of 14) MLT2A2|LTR|ERVL -59298 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 382-206 chr2 107474250 107474429 + 3 NA Intergenic L1M4|LINE|L1 -55080 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 607-8 chr1 95522571 95522879 + 3 NA Intergenic Intergenic 12609 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 541-53 chr12 125214575 125214755 + 3 NA intron (NM_001366854, intron 1 of 8) MLT1K|LTR|ERVL-MaLR 28279 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 448-177 chr4 40430455 40430718 + 3 NA intron (NM_001098634, intron 6 of 6) intron (NM_001098634, intron 6 of 6) 71533 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 660-21 chr12 41939769 41940024 + 3 NA Intergenic Intergenic 175707 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 414-212 chr3 84169005 84169233 + 3 NA Intergenic Intergenic 700456 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 334-74 chr10 114020377 114020500 + 3 NA Intergenic L1ME1|LINE|L1 -23428 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 723-48 chr3 4130386 4130735 + 3 NA Intergenic HERVL-int|LTR|ERVL -172744 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 298-316 chr4 30410295 30410496 + 3 NA Intergenic L1M2|LINE|L1 -309974 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 528-68 chr12 103410851 103411047 + 3 NA intron (NR_103526, intron 2 of 10) MIRb|SINE|MIR 85019 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 437-96 chr16 24355845 24356083 + 3 NA intron (NM_006539, intron 3 of 3) intron (NM_006539, intron 3 of 3) 100411 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 227-196 chr2 222070234 222070375 + 3 NA Intergenic Intergenic -227843 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 587-32 chr11 97771922 97772327 + 3 NA Intergenic Intergenic -1248825 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 562-129 chr21 28296490 28296849 + 3 NA Intergenic Intergenic -68002 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 516-126 chr2 80954737 80954920 + 3 NA Intergenic L2c|LINE|L2 512118 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 421-130 chr2 27929931 27930182 + 3 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -38942 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 461-6 chr1 87579679 87579892 + 3 NA Intergenic Intergenic -208130 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 431-177 chr3 60971931 60972157 + 3 NA intron (NR_148922, intron 3 of 3) L1MC5|LINE|L1 279408 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 771-79 chr7 17390364 17390864 + 3 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 15697 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 932-2 chr10 94250586 94251320 + 3 NA intron (NM_001165979, intron 7 of 31) intron (NM_001165979, intron 7 of 31) 36117 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 336-116 chr12 2790911 2791078 + 3 NA intron (NR_146317, intron 2 of 3) intron (NR_146317, intron 2 of 3) -3976 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FKBP prolyl isomerase 4 protein-coding 366-137 chr15 49722417 49722620 + 3 NA Intergenic Charlie1|DNA|hAT-Charlie 101470 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 574-71 chr2 50316543 50316873 + 3 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 31046 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 469-182 chr3 96770007 96770250 + 3 NA Intergenic L1M4b|LINE|L1 -44466 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 898-29 chr5 85614785 85615282 + 3 NA Intergenic Intergenic -667411 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 433-96 chr15 76570548 76570822 + 3 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -15962 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 559-132 chr4 19705113 19705503 + 3 NA Intergenic Intergenic -546597 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 993-19 chr5 63006162 63006903 + 3 NA Intergenic L1MA8|LINE|L1 427713 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 387-324 chr6 166362752 166362902 + 3 NA Intergenic Intergenic 20113 NM_001270879 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 586-108 chr3 189591495 189591781 + 3 NA Intergenic L1MA9|LINE|L1 -5108 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 646-102 chr5 60514558 60515064 + 3 NA intron (NR_024617, intron 1 of 3) L1MEg|LINE|L1 -18525 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 610-170 chr8 55333210 55333447 + 3 NA intron (NM_052898, intron 1 of 2) L1M4c|LINE|L1 121993 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 609-47 chr19 27692442 27692788 + 3 NA Intergenic HSAT4|Satellite|centr -100816 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 577-14 chr1 118637148 118637467 + 3 NA Intergenic L2|LINE|L2 351036 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 426-291 chr8 68925705 68925900 + 3 NA intron (NR_039986, intron 3 of 4) intron (NR_039986, intron 3 of 4) 178388 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 483-198 chr5 15130649 15130831 + 3 NA Intergenic L1PA15|LINE|L1 135820 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 440-268 chr9 78507658 78507868 + 3 NA Intergenic MIRb|SINE|MIR 210638 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 890-22 chr3 6048134 6048574 + 3 NA Intergenic LTR9D|LTR|ERV1 757095 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 730-10 chr10 108046864 108047203 + 3 NA intron (NR_125760, intron 1 of 4) MSTB|LTR|ERVL-MaLR 22260 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 520-186 chr3 61123491 61123799 + 3 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 127807 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 955-18 chr6 42520415 42520857 + 3 NA Intergenic Intergenic -43386 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 599-98 chr4 77550269 77550560 + 3 NA intron (NM_006419, intron 1 of 4) L1P2|LINE|L1 38661 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 629-137 chr9 23938986 23939312 + 3 NA Intergenic Intergenic -88548 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 640-28 chr12 132885181 132885576 + 3 NA intron (NM_018223, intron 2 of 17) AluY|SINE|Alu 2240 NM_001161346 55743 Hs.720197 NM_018223 ENSG00000072609 CHFR RNF116|RNF196 checkpoint with forkhead and ring finger domains protein-coding 477-239 chr5 92385262 92385607 + 3 NA Intergenic Intergenic -1002117 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 802-13 chr12 59156884 59157397 + 3 NA Intergenic MER39|LTR|ERV1 -236602 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 622-79 chr20 57624112 57624545 + 3 NA Intergenic Intergenic -3902 NR_136660 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 296-251 chr2 186096928 186097101 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -10697 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 580-74 chr2 6703073 6703383 + 3 NA Intergenic L1MB7|LINE|L1 -52709 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 477-209 chr3 137158427 137158670 + 3 NA Intergenic Intergenic 200565 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 385-352 chr7 36948769 36948916 + 3 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -29410 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 836-66 chr8 139546099 139546399 + 3 NA Intergenic LTR2C|LTR|ERV1 156874 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 340-325 chr20 55741718 55741871 + 3 NA Intergenic Intergenic 263725 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 548-100 chr18 71660227 71660534 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -81424 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 341-499 chr7 64978276 64978489 + 3 NA exon (NM_015852, exon 4 of 4) exon (NM_015852, exon 4 of 4) 12654 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 423-160 chr21 29558419 29558635 + 3 NA intron (NM_000830, intron 15 of 16) intron (NM_000830, intron 15 of 16) -37513 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 930-10 chr14 72004416 72004804 + 3 NA intron (NM_001370288, intron 2 of 16) AluJb|SINE|Alu 71083 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 659-59 chr2 230032061 230032459 + 3 NA Intergenic LTR49-int|LTR|ERV1 36664 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 445-64 chr14 44876998 44877191 + 3 NA Intergenic L1MA3|LINE|L1 -20181 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 493-262 chr6 145250362 145250537 + 3 NA Intergenic Intergenic 436428 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 489-28 chr10 64616143 64616439 + 3 NA Intergenic MamRep605|LTR?|LTR? -209237 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 724-36 chr2 68523505 68523875 + 3 NA intron (NM_173545, intron 5 of 9) intron (NM_173545, intron 5 of 9) 56105 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 605-134 chr9 115627007 115627457 + 3 NA Intergenic Intergenic 117007 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 493-89 chr14 88610618 88610818 + 3 NA intron (NR_136936, intron 14 of 15) AluJo|SINE|Alu 16298 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 380-90 chr12 24158061 24158281 + 3 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -54250 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 599-124 chr7 29834132 29834380 + 3 NA intron (NM_001080529, intron 1 of 8) Tigger15a|DNA|TcMar-Tigger 27702 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 876-7 chr10 123984470 123984876 + 3 NA Intergenic L1MA6|LINE|L1 -92866 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 393-326 chr7 55119923 55120154 + 3 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 10199 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 387-169 chr2 77399137 77399305 + 3 NA intron (NR_146416, intron 1 of 1) L1MA8|LINE|L1 123155 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 185-17 chr1 223141859 223141957 + 3 NA intron (NM_003268, intron 1 of 5) MamRep38|DNA|hAT 1340 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 762-22 chr14 45348797 45349304 + 3 NA Intergenic Intergenic -95848 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 314-340 chr20 39315778 39315925 + 3 NA Intergenic MIRb|SINE|MIR -91103 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 801-12 chr15 46858784 46859178 + 3 NA Intergenic Intergenic -325108 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 465-31 chr10 62661181 62661465 + 3 NA intron (NM_199451, intron 6 of 7) intron (NM_199451, intron 6 of 7) 140875 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 500-302 chr8 117131008 117131231 + 3 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -3876 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 403-225 chr4 82011171 82011361 + 3 NA Intergenic L1PA10|LINE|L1 362725 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 362-85 chr11 24704765 24704959 + 3 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 207809 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 661-62 chr3 59473883 59474247 + 3 NA Intergenic Intergenic 184432 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 996-6 chr12 19581242 19581984 + 3 NA Intergenic L1ME4b|LINE|L1 141014 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 608-115 chr4 147254474 147254766 + 3 NA Intergenic HAL1M8|LINE|L1 90097 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 806-41 chr3 106844892 106845298 + 3 NA Intergenic L2c|LINE|L2 395543 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 396-240 chr3 189056991 189057220 + 3 NA Intergenic Intergenic -109466 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 571-163 chr8 33953439 33953792 + 3 NA Intergenic L1PREC2|LINE|L1 -353509 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 691-82 chr7 110668048 110668327 + 3 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -422819 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 590-88 chr2 238934102 238934426 + 3 NA Intergenic L1MD1|LINE|L1 -7995 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 550-203 chr6 109710627 109710864 + 3 NA intron (NM_014845, intron 1 of 22) L1PA13|LINE|L1 19524 NM_014845 9896 Hs.529959 NM_014845 ENSG00000112367 FIG4 ALS11|BTOP|CMT4J|KIAA0274|SAC3|YVS|dJ249I4.1 FIG4 phosphoinositide 5-phosphatase protein-coding 514-248 chr6 54197025 54197228 + 3 NA intron (NM_001281746, intron 10 of 11) L2a|LINE|L2 85683 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 686-4 chr1 60477186 60477572 + 3 NA Intergenic MIR|SINE|MIR 145306 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 1408-5 chr4 34203647 34204649 + 3 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 65599 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 331-289 chr2 148148691 148148817 + 3 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -127150 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 260-290 chr3 154767351 154767515 + 3 NA Intergenic Intergenic -256691 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 518-116 chr19 9388034 9388256 + 3 NA Intergenic L1MEf|LINE|L1 11829 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 957-11 chr17 68587330 68587829 + 3 NA intron (NM_017565, intron 1 of 10) intron (NM_017565, intron 1 of 10) 13788 NM_017565 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 754-10 chr10 118931353 118931770 + 3 NA Intergenic L1MD1|LINE|L1 -98153 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 801-25 chr18 60096826 60097224 + 3 NA Intergenic Intergenic 197029 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 438-134 chr2 191930429 191930606 + 3 NA Intergenic Intergenic -83429 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 306-432 chr6 62430381 62430530 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -144228 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 533-105 chr2 119831143 119831376 + 3 NA intron (NM_002830, intron 2 of 26) MER1B|DNA|hAT-Charlie 71337 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 169-25 chr12 16120852 16120962 + 3 NA Intergenic Intergenic 156778 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 512-65 chr12 54927559 54927784 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 46061 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 498-11 chr1 182743209 182743471 + 3 NA Intergenic Intergenic 30478 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 395-364 chr9 132671882 132672093 + 3 NA intron (NR_133925, intron 1 of 5) intron (NR_133925, intron 1 of 5) 1523 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 385-253 chr3 142736503 142736658 + 3 NA intron (NM_003304, intron 2 of 11) intron (NM_003304, intron 2 of 11) 12156 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 387-249 chr4 38996873 38997137 + 3 NA intron (NM_001303228, intron 2 of 6) intron (NM_001303228, intron 2 of 6) 35404 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 282-19 chr1 190386459 190386579 + 3 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 89491 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 414-264 chr5 37774260 37774529 + 3 NA Intergenic Intergenic 60428 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 464-231 chr7 13374636 13374881 + 3 NA Intergenic L1MA9|LINE|L1 611756 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 538-201 chr5 91995767 91996035 + 3 NA Intergenic Intergenic -612584 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 635-31 chr14 73384001 73384229 + 3 NA intron (NM_001005743, intron 2 of 12) L1MEg|LINE|L1 74465 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 652-127 chr9 28051583 28052065 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -477958 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 433-99 chr15 81934560 81934846 + 3 NA Intergenic Intergenic 111315 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 500-243 chr6 52059024 52059210 + 3 NA intron (NM_138694, intron 15 of 66) intron (NM_138694, intron 15 of 66) 28496 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 809-32 chr3 86277157 86277493 + 3 NA Intergenic Intergenic -204618 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 761-48 chr3 175070477 175070835 + 3 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 44586 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 968-2 chr10 23822495 23823139 + 3 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 128090 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 754-5 chr1 236381356 236381717 + 3 NA Intergenic L1MEc|LINE|L1 -12750 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 475-46 chr11 97860937 97861125 + 3 NA Intergenic MIR|SINE|MIR -1159918 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 308-213 chr19 56742680 56742828 + 3 NA Intergenic Intergenic -22568 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 377-437 chrX 83275110 83275264 + 3 NA Intergenic Intergenic -233103 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 476-24 chr10 39176046 39176346 + 3 NA Intergenic ALR/Alpha|Satellite|centr 479600 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 771-68 chr5 29676439 29676784 + 3 NA Intergenic L1M4|LINE|L1 -203949 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 324-146 chr13 90949733 90949883 + 3 NA Intergenic Intergenic -23211 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 645-138 chr9 102871316 102871667 + 3 NA Intergenic Intergenic -123842 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 535-124 chr2 56811323 56811693 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -625738 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 869-39 chr4 123581591 123582133 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -68129 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 740-82 chrX 91285225 91285633 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -149410 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 439-202 chr4 33023312 33023510 + 3 NA Intergenic MIRc|SINE|MIR 672373 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 672-120 chr9 96819851 96820189 + 3 NA intron (NM_001001662, intron 5 of 5) intron (NM_001001662, intron 5 of 5) 34494 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 177-132 chr5 113438501 113438568 + 3 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) -3545 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 441-72 chr14 35525488 35525741 + 3 NA Intergenic AluSq2|SINE|Alu -8550 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 472-26 chr1 228733756 228734012 + 3 NA intron (NR_037962, intron 1 of 2) MER96|DNA|hAT-Tip100 -1595 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 354-409 chr6 133310661 133310819 + 3 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 69241 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 499-159 chr3 3659009 3659286 + 3 NA Intergenic Intergenic -140284 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 302-225 chr2 125935786 125935928 + 3 NA Intergenic L1ME2|LINE|L1 182128 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 523-130 chr2 59870987 59871388 + 3 NA Intergenic Intergenic 511849 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 933-28 chr3 109163098 109163644 + 3 NA Intergenic Intergenic -14794 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 351-134 chr14 75521182 75521358 + 3 NA Intergenic Intergenic -1199 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 543-142 chr2 229035917 229036138 + 3 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 196065 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 641-55 chr19 28960396 28960708 + 3 NA Intergenic Intergenic -4579 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 462-193 chr4 15849263 15849562 + 3 NA non-coding (NR_132660, exon 7 of 7) non-coding (NR_132660, exon 7 of 7) 71084 NM_001775 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 484-58 chr14 22131021 22131308 + 3 NA Intergenic L2|LINE|L2 301589 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 563-189 chr8 142083936 142084181 + 3 NA Intergenic L1MCa|LINE|L1 -92281 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 465-303 chr8 133388072 133388370 + 3 NA Intergenic MIR|SINE|MIR -90917 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 554-200 chr8 65077947 65078202 + 3 NA Intergenic Intergenic 102266 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 556-3 chr1 68107004 68107398 + 3 NA intron (NR_040077, intron 6 of 9) intron (NR_040077, intron 6 of 9) -55570 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 515-9 chr1 102937729 102938032 + 3 NA intron (NM_001854, intron 44 of 66) intron (NM_001854, intron 44 of 66) 170616 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 499-145 chr20 16090637 16090851 + 3 NA Intergenic L1MB7|LINE|L1 -104862 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 372-48 chr10 65976878 65977030 + 3 NA intron (NM_001127384, intron 16 of 17) intron (NM_001127384, intron 16 of 17) 405529 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 498-13 chr1 192691229 192691536 + 3 NA Intergenic Intergenic -24946 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 318-48 chr1 247236552 247236770 + 3 NA Intergenic AluY|SINE|Alu -19411 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 445-136 chr2 134781487 134781739 + 3 NA Intergenic L1ME4a|LINE|L1 -57003 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 455-139 chr2 210511836 210512014 + 3 NA intron (NM_001122633, intron 1 of 38) intron (NM_001122633, intron 1 of 38) -7793 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 720-65 chr4 162542241 162542523 + 3 NA Intergenic MIRb|SINE|MIR -378348 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 1216-5 chr3 31437254 31437948 + 3 NA Intergenic L2a|LINE|L2 -95324 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 745-45 chr4 42746710 42747064 + 3 NA Intergenic Intergenic -89782 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 347-379 chr5 24176180 24176456 + 3 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 224970 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 1191-6 chr8 140029963 140030378 + 3 NA intron (NM_001160372, intron 17 of 22) L1MC|LINE|L1 70365 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 254-83 chr12 65001692 65001859 + 3 NA Intergenic L2a|LINE|L2 -9484 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 419-235 chr5 102709081 102709244 + 3 NA Intergenic L2b|LINE|L2 -37698 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 847-25 chr19 32175878 32176424 + 3 NA Intergenic Intergenic -70235 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 1354-2 chr11 39338811 39339569 + 3 NA Intergenic L1MB1|LINE|L1 690332 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 527-51 chr11 109920742 109921036 + 3 NA Intergenic L1MC1|LINE|L1 -172503 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 584-95 chr3 23021751 23022000 + 3 NA Intergenic L1PB1|LINE|L1 180703 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 647-80 chr5 38657084 38657414 + 3 NA intron (NR_103554, intron 8 of 8) intron (NR_103554, intron 8 of 8) -61844 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 835-5 chr1 167815495 167815972 + 3 NA intron (NM_018417, intron 31 of 32) L1MCa|LINE|L1 93751 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 346-442 chr6 133862635 133862866 + 3 NA intron (NR_109982, intron 1 of 8) L1PA14|LINE|L1 26256 NR_109982 100507308 Hs.102408 NR_109982 ENSG00000227954 TARID EYA4-AS1 TCF21 antisense RNA inducing promoter demethylation ncRNA 719-37 chr2 12201450 12201855 + 3 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 2522 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 878-13 chr12 37925607 37925999 + 3 NA Intergenic ALR/Alpha|Satellite|centr -390971 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 470-129 chr2 75034473 75034652 + 3 NA Intergenic Intergenic -56250 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 467-136 chr2 103607622 103607936 + 3 NA Intergenic L1ME2|LINE|L1 -623350 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 939-11 chr13 20751468 20751870 + 3 NA intron (NM_001318939, intron 2 of 4) L1MA4A|LINE|L1 22289 NM_174928 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 EEF1A lysine methyltransferase 1 protein-coding 532-20 chr10 36664724 36665034 + 3 NA Intergenic L1PB1|LINE|L1 -460978 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 517-262 chr8 76088598 76088904 + 3 NA Intergenic L1PB1|LINE|L1 -317903 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 443-253 chr5 143907084 143907315 + 3 NA Intergenic Intergenic 95038 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 567-91 chr2 125728142 125728396 + 3 NA Intergenic Intergenic 389716 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 602-106 chr5 74504464 74504811 + 3 NA intron (NR_126354, intron 1 of 2) intron (NR_126354, intron 1 of 2) 32339 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 439-279 chr8 70528902 70529130 + 3 NA Intergenic AluJb|SINE|Alu 57882 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 614-89 chr4 43007893 43008164 + 3 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 114762 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 414-140 chr19 57030855 57031032 + 3 NA Intergenic Intergenic -89198 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 385-233 chr3 12519867 12520033 + 3 NA intron (NM_025265, intron 8 of 11) MIR|SINE|MIR 25514 NM_001195279 100129480 Hs.572974 NM_001195279 ENSG00000225526 MKRN2OS C3orf83|MKRN2-AS1 MKRN2 opposite strand protein-coding 749-75 chr5 17859021 17859328 + 3 NA intron (NR_134286, intron 4 of 7) Kanga2_a|DNA|TcMar-Tc2 51900 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 470-16 chr1 238928547 238928715 + 3 NA Intergenic LTR75_1|LTR|ERV1 -442614 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 443-42 chr10 106335729 106335911 + 3 NA Intergenic Intergenic 195655 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 525-132 chr2 172663276 172663498 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -72458 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 595-21 chr10 111785048 111785415 + 3 NA Intergenic Intergenic 398534 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 528-219 chr6 44884326 44884575 + 3 NA intron (NM_181356, intron 12 of 12) L1P3|LINE|L1 313320 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 472-20 chr1 172011190 172011368 + 3 NA intron (NM_001278252, intron 4 of 14) L1MEf|LINE|L1 -127529 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 702-11 chr10 115718228 115718751 + 3 NA intron (NM_207303, intron 26 of 28) Charlie24|DNA|hAT-Charlie 476300 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 441-38 chr10 133545448 133545638 + 3 NA Intergenic HERVL74-int|LTR|ERVL 18180 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 495-209 chr5 179113806 179114020 + 3 NA exon (NM_014244, exon 22 of 22) exon (NM_014244, exon 22 of 22) 53540 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 935-26 chr3 10460273 10460634 + 3 NA intron (NM_001353564, intron 2 of 20) intron (NM_001353564, intron 2 of 20) 45131 NM_001363862 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 529-131 chr20 51049469 51049709 + 3 NA Intergenic L1MB3|LINE|L1 -26482 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 354-437 chr7 83484138 83484296 + 3 NA intron (NM_001178129, intron 2 of 16) L2|LINE|L2 157214 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 360-346 chr5 9728172 9728341 + 3 NA intron (NR_027112, intron 5 of 12) intron (NR_027112, intron 5 of 12) -97905 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 465-321 chrX 69376693 69376937 + 3 NA Intergenic L1M4|LINE|L1 -128420 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 525-168 chr3 163840121 163840470 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 331261 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 412-353 chrX 68580476 68580643 + 3 NA Intergenic L2a|LINE|L2 -67110 NM_001142503 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 975-15 chr6 74188483 74189245 + 3 NA intron (NR_110856, intron 1 of 3) L1PREC2|LINE|L1 119413 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 772-49 chr7 54483149 54483580 + 3 NA Intergenic Intergenic -58961 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 936-9 chr14 47789648 47790264 + 3 NA intron (NR_039996, intron 1 of 2) LTR16B1|LTR|ERVL 5058 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 582-111 chr4 66022118 66022428 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -254551 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 518-156 chr20 11899499 11899802 + 3 NA intron (NM_001282550, intron 1 of 4) L1PA8|LINE|L1 7157 NM_001282550 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 340-2 chr1 14090471 14090630 + 3 NA Intergenic L1ME1|LINE|L1 329423 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 764-14 chr11 106483763 106484153 + 3 NA Intergenic Intergenic 232551 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 916-17 chr2 159295205 159295627 + 3 NA Intergenic AluJb|SINE|Alu -8713 NM_001128212 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 664-62 chr2 234173240 234173639 + 3 NA Intergenic AluSx|SINE|Alu 122737 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 454-101 chr15 23547931 23548181 + 3 NA Intergenic Intergenic 14075 NR_039731 100616275 NR_039731 ENSG00000265673 MIR4508 mir-4508 microRNA 4508 ncRNA 551-102 chr20 8580887 8581216 + 3 NA intron (NM_182734, intron 3 of 32) L2b|LINE|L2 -250134 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 741-23 chr17 51851345 51851696 + 3 NA intron (NM_001082533, intron 4 of 9) MIR|SINE|MIR 307194 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 565-175 chr8 25707031 25707363 + 3 NA Intergenic Intergenic 247964 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 597-99 chr4 61329343 61329564 + 3 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 127281 NM_001371342 340-91 chr11 114649136 114649292 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -29313 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 410-203 chr3 180142894 180143103 + 3 NA Intergenic Intergenic -106061 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 340-484 chr6 139909003 139909147 + 3 NA Intergenic Intergenic 54225 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 330-387 chr4 111010656 111010853 + 3 NA Intergenic Intergenic -150107 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 461-99 chr16 83685209 83685401 + 3 NA intron (NM_001220489, intron 9 of 12) MLT1J|LTR|ERVL-MaLR 118671 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 602-42 chr16 83344755 83345138 + 3 NA exon (NM_001257, exon 6 of 14) exon (NM_001257, exon 6 of 14) -163400 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 655-121 chr8 57045314 57045688 + 3 NA Intergenic MLT2B3|LTR|ERVL -51634 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 487-269 chr7 43546394 43546798 + 3 NA intron (NM_001287059, intron 24 of 27) Tigger2|DNA|TcMar-Tigger -24054 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 842-39 chr5 97157751 97158109 + 3 NA Intergenic L1MA3|LINE|L1 -15319 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 472-265 chr6 40210426 40210667 + 3 NA Intergenic Intergenic 145460 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 784-56 chr7 3202843 3203364 + 3 NA Intergenic MER63C|DNA|hAT-Blackjack -44530 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 605-107 chr7 11902425 11902722 + 3 NA Intergenic L1MA6|LINE|L1 -70375 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 726-48 chr22 26965976 26966404 + 3 NA Intergenic MIR|SINE|MIR 62898 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 243-356 chr5 57740248 57740396 + 3 NA Intergenic Intergenic 89662 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 529-38 chr11 114581315 114581543 + 3 NA intron (NM_017678, intron 4 of 5) intron (NM_017678, intron 4 of 5) 14357 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 447-195 chr4 64676480 64676659 + 3 NA Intergenic HERVL-int|LTR|ERVL -267109 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 453-5 chr1 56103426 56103681 + 3 NA Intergenic L1MA5A|LINE|L1 158466 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 443-127 chr18 7925154 7925373 + 3 NA intron (NM_002845, intron 4 of 30) intron (NM_002845, intron 4 of 30) 357947 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 528-22 chr1 214819720 214820070 + 3 NA Intergenic L1PB1|LINE|L1 -185647 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 497-19 chr10 58057742 58057993 + 3 NA Intergenic L1MEd|LINE|L1 210027 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 403-60 chr11 98974576 98974842 + 3 NA Intergenic L1ME3A|LINE|L1 -46240 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 833-20 chr22 49249506 49250040 + 3 NA Intergenic L1MEc|LINE|L1 293693 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 572-160 chr7 7928014 7928340 + 3 NA Intergenic L2a|LINE|L2 40575 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 497-189 chr3 182784841 182785054 + 3 NA Intergenic Intergenic -8557 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 706-2 chr1 71716875 71717184 + 3 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 119983 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 606-149 chr7 46979942 46980200 + 3 NA Intergenic Intergenic -282949 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 536-115 chr2 49541411 49541660 + 3 NA Intergenic L1MA3|LINE|L1 -387008 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 235-30 chr10 5452856 5452986 + 3 NA intron (NM_001047160, intron 6 of 11) intron (NM_001047160, intron 6 of 11) 6312 NM_005863 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 301-315 chr4 61493150 61493346 + 3 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 291076 NM_001371342 652-30 chr12 39810125 39810483 + 3 NA intron (NR_135051, intron 18 of 18) L1ME2|LINE|L1 184121 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 507-25 chr10 6866452 6866630 + 3 NA Intergenic Intergenic 86943 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 316-436 chr5 44529381 44529544 + 3 NA Intergenic L1MC5a|LINE|L1 -19180 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 339-280 chr2 148404314 148404465 + 3 NA intron (NM_018328, intron 5 of 14) L1MEc|LINE|L1 -240362 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 371-45 chr10 52697174 52697324 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 58155 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 773-30 chr4 59363882 59364313 + 3 NA Intergenic Intergenic 350524 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 265-40 chr10 82773750 82773927 + 3 NA intron (NR_163252, intron 3 of 8) L1MA9|LINE|L1 -540918 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 490-41 chr10 58518863 58519158 + 3 NA intron (NM_001080512, intron 1 of 20) MLT1J|LTR|ERVL-MaLR 6138 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 727-50 chr21 29791777 29792181 + 3 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 43804 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 304-462 chr6 67195550 67195707 + 3 NA Intergenic AluSq|SINE|Alu -859723 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 955-22 chr8 88381804 88382190 + 3 NA Intergenic Intergenic -54514 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 594-47 chr15 26322156 26322493 + 3 NA Intergenic Intergenic 206511 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 379-64 chr11 94509137 94509318 + 3 NA Intergenic L1ME3|LINE|L1 -3234 NM_001190462 643037 NM_001190462 ENSG00000257057 C11orf97 LINC01171 chromosome 11 open reading frame 97 protein-coding 1136-2 chr11 24105193 24105777 + 3 NA Intergenic L1PB4|LINE|L1 -391568 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 396-134 chr18 56473494 56473628 + 3 NA Intergenic Intergenic 165031 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 755-36 chr2 72026209 72026506 + 3 NA Intergenic L1ME4a|LINE|L1 121505 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 408-135 chr17 9328198 9328402 + 3 NA intron (NM_004853, intron 7 of 7) MER39|LTR|ERV1 -149182 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 976-23 chr7 51978138 51978485 + 3 NA Intergenic Intergenic -585055 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 522-34 chr10 127624920 127625214 + 3 NA Intergenic L1M6|LINE|L1 75718 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 467-262 chr7 46744248 46744473 + 3 NA Intergenic L1MDa|LINE|L1 -47238 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 442-43 chr11 38970685 38970855 + 3 NA Intergenic Intergenic 321912 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 382-6 chr1 49891686 49891899 + 3 NA intron (NM_001323575, intron 1 of 12) intron (NM_001323575, intron 1 of 12) 132162 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 537-121 chr2 116771595 116771845 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -1042971 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 497-86 chr16 12237244 12237554 + 3 NA intron (NM_032167, intron 14 of 20) LTR86B1|LTR|ERVL 260665 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 411-270 chr7 36741269 36741534 + 3 NA Intergenic Intergenic -16852 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 239-127 chr17 12235790 12235898 + 3 NA Intergenic LTR37A|LTR|ERV1 153945 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 299-221 chr2 126228583 126228772 + 3 NA Intergenic L1MEc|LINE|L1 -110692 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 870-5 chr12 63768866 63769376 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -10788 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 676-10 chr1 182178724 182179101 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -117200 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 238-378 chr8 60335179 60335341 + 3 NA Intergenic L1MA6|LINE|L1 -53860 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 493-39 chr11 6850535 6850741 + 3 NA Intergenic L2c|LINE|L2 4955 NM_178168 144124 Hs.447478 NM_178168 ENSG00000166363 OR10A5 JCG6|OR10A1|OR11-403 olfactory receptor family 10 subfamily A member 5 protein-coding 436-165 chr20 59591808 59591988 + 3 NA intron (NM_001199505, intron 1 of 12) intron (NM_001199505, intron 1 of 12) -12642 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 371-181 chr2 115437792 115437958 + 3 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 94060 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 653-39 chr14 61856089 61856421 + 3 NA intron (NM_001367656, intron 1 of 7) L2|LINE|L2 43552 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 554-4 chr1 33721835 33722112 + 3 NA intron (NM_052896, intron 19 of 69) L1ME4a|LINE|L1 -138502 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 880-26 chr22 43587862 43588445 + 3 NA intron (NM_198856, intron 22 of 29) HAL1|LINE|L1 71899 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 586-80 chr2 145153306 145153677 + 3 NA Intergenic L1ME1|LINE|L1 485524 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 415-227 chr5 162191032 162191248 + 3 NA Intergenic Intergenic 123498 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 404-259 chr5 100738990 100739269 + 3 NA Intergenic L1MB7|LINE|L1 77436 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 726-24 chr13 109387907 109388395 + 3 NA Intergenic Intergenic -12545 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 961-9 chr2 110654012 110654369 + 3 NA intron (NM_001278616, intron 15 of 23) intron (NM_001278616, intron 15 of 23) 4059 NR_132975 106635550 NR_132975 SNORD132 - small nucleolar RNA, C/D box 132 snoRNA 288-90 chr13 19943161 19943310 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -14171 NM_001353159 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 420-115 chr19 21579914 21580063 + 3 NA Intergenic MIRb|SINE|MIR -69680 NR_144514 400682 Hs.568075 NR_144514 LOC400682 - zinc finger protein 100-like pseudo 859-22 chr2 212610697 212611139 + 3 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -72116 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 1280-5 chr5 82559523 82560159 + 3 NA Intergenic Intergenic -280314 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 355-434 chr6 65507711 65507877 + 3 NA intron (NM_001292009, intron 2 of 43) L1MCa|LINE|L1 72010 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 338-83 chr10 112057369 112057523 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger 126319 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 384-35 chr10 41815926 41816129 + 3 NA Intergenic ALR/Alpha|Satellite|centr 552018 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 491-97 chr18 6469203 6469528 + 3 NA Intergenic L1MB2|LINE|L1 -42051 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 466-110 chr19 29450180 29450424 + 3 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 75450 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 941-26 chr7 54036752 54037201 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -225045 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 456-94 chr14 65543254 65543488 + 3 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 72269 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 981-8 chr14 86372482 86373068 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 438097 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 523-167 chr22 47509828 47510222 + 3 NA Intergenic Intergenic -22914 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 411-121 chr17 77581628 77581826 + 3 NA Intergenic AluJr|SINE|Alu 34786 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 345-297 chr2 185706951 185707101 + 3 NA Intergenic L1PA16|LINE|L1 31693 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 762-73 chr8 86718394 86718802 + 3 NA intron (NM_019098, intron 3 of 17) L1MA5A|LINE|L1 25077 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 908-9 chr15 79287274 79287648 + 3 NA intron (NM_001146341, intron 1 of 1) intron (NM_001146341, intron 1 of 1) -3516 NR_038997 729911 Hs.513931 NR_038997 ENSG00000259234 ANKRD34C-AS1 - ANKRD34C antisense RNA 1 ncRNA 914-21 chr22 45652443 45652984 + 3 NA Intergenic AluSz|SINE|Alu -19085 NM_001167621 25814 Hs.475125 NM_013236 ENSG00000130638 ATXN10 E46L|HUMEEP|SCA10 ataxin 10 protein-coding 397-154 chr2 66312412 66312678 + 3 NA Intergenic L1MEf|LINE|L1 45783 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 500-232 chr5 86464744 86465039 + 3 NA Intergenic HERVE-int|LTR|ERV1 -153050 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 1053-21 chr8 121970180 121970781 + 3 NA Intergenic MamTip3|DNA|hAT-Tip100 -329040 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 900-44 chr8 27960899 27961544 + 3 NA intron (NM_173833, intron 3 of 8) MSTB|LTR|ERVL-MaLR 31452 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 534-239 chr7 79764625 79764959 + 3 NA Intergenic Intergenic 310832 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 468-320 chr8 119689732 119689993 + 3 NA Intergenic MIRb|SINE|MIR -16472 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 475-135 chr2 89775291 89775475 + 3 NA Intergenic Intergenic -137476 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 624-41 chr15 87273776 87274079 + 3 NA Intergenic Intergenic -285501 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 868-26 chr3 144292870 144293228 + 3 NA Intergenic Intergenic 319968 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 472-24 chr1 220865187 220865480 + 3 NA intron (NR_046901, intron 1 of 2) L1M4|LINE|L1 -14110 NM_021958 3142 Hs.74870 NM_021958 ENSG00000136630 HLX HB24|HLX1 H2.0 like homeobox protein-coding 780-51 chr5 127844110 127844501 + 3 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 140916 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 774-63 chr4 31430864 31431488 + 3 NA Intergenic Intergenic -75368 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 504-131 chr2 104640369 104640664 + 3 NA Intergenic L2b|LINE|L2 117203 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 432-117 chr2 15343625 15343959 + 3 NA intron (NR_052013, intron 35 of 50) L1M4|LINE|L1 217542 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 419-172 chr3 3283690 3283872 + 3 NA Intergenic L1MCa|LINE|L1 -104064 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 770-64 chr6 52037443 52037832 + 3 NA intron (NM_138694, intron 27 of 66) L1ME4b|LINE|L1 49976 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 817-18 chr16 10571830 10572463 + 3 NA intron (NM_001424, intron 1 of 4) intron (NM_001424, intron 1 of 4) 8452 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 350-287 chr21 27438449 27438611 + 3 NA Intergenic Intergenic -283849 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 486-184 chr21 30317266 30317533 + 3 NA Intergenic L1ME3A|LINE|L1 2916 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 403-20 chr1 212688927 212689099 + 3 NA intron (NM_018664, intron 2 of 2) L2c|LINE|L2 10827 NM_018664 55509 Hs.62919 NM_018664 ENSG00000123685 BATF3 JDP1|JUNDM1|SNFT basic leucine zipper ATF-like transcription factor 3 protein-coding 936-22 chr3 106985473 106986018 + 3 NA Intergenic Intergenic 254893 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 320-137 chr13 98230126 98230357 + 3 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 21717 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 316-394 chr4 56344622 56344823 + 3 NA intron (NM_001323893, intron 10 of 12) intron (NM_001323893, intron 10 of 12) 42769 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 207-10 chr1 74034786 74034913 + 3 NA intron (NM_001322315, intron 7 of 7) intron (NM_001322315, intron 7 of 7) 163327 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 759-41 chr2 167687303 167687779 + 3 NA Intergenic Intergenic -131131 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 389-140 chr18 3802656 3802910 + 3 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 42575 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 528-117 chr19 36891334 36891618 + 3 NA 3' UTR (NM_001171979, exon 6 of 6) 3' UTR (NM_001171979, exon 6 of 6) 24563 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 526-36 chr11 29483448 29483716 + 3 NA Intergenic Intergenic -110831 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 264-232 chr20 8510780 8510889 + 3 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 262130 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 951-5 chr11 11644671 11645083 + 3 NA Intergenic Intergenic 11845 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 667-126 chr9 29823201 29823704 + 3 NA Intergenic L1M4|LINE|L1 585002 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 389-236 chr3 98614156 98614442 + 3 NA Intergenic L1MEf|LINE|L1 -20688 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 512-83 chr15 24835449 24835676 + 3 NA intron (NM_001349459, intron 2 of 11) intron (NM_001349459, intron 2 of 11) 11954 NM_022807 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 1328-2 chr20 47076590 47077414 + 3 NA intron (NM_172110, intron 7 of 13) MLT1K|LTR|ERVL-MaLR -89965 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 573-187 chr7 88191692 88191936 + 3 NA intron (NM_001324419, intron 30 of 31) intron (NM_001324419, intron 30 of 31) -24846 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 729-68 chr6 69526238 69526668 + 3 NA Intergenic Intergenic 270013 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 652-20 chr10 66564694 66565102 + 3 NA intron (NM_001127384, intron 10 of 17) MIRb|SINE|MIR -361138 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 565-148 chr5 123205391 123205751 + 3 NA Intergenic L2b|LINE|L2 -115255 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 688-38 chr14 26896455 26896836 + 3 NA intron (NR_110041, intron 3 of 3) intron (NR_110041, intron 3 of 3) -11997 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 516-119 chr2 40002684 40002932 + 3 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 85174 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 382-164 chr19 43873292 43873478 + 3 NA exon (NM_001033719, exon 2 of 2) exon (NM_001033719, exon 2 of 2) 6751 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 542-181 chr5 150945294 150945510 + 3 NA intron (NR_026867, intron 1 of 4) MER90a|LTR|ERV1 1182 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 391-325 chr7 27272368 27272566 + 3 NA Intergenic Intergenic -25238 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 615-51 chr18 2372003 2372244 + 3 NA Intergenic L1PB1|LINE|L1 199382 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 486-106 chr16 46399399 46399617 + 3 NA Intergenic Intergenic 169589 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 583-97 chr2 214164048 214164398 + 3 NA intron (NR_047660, intron 14 of 14) L2a|LINE|L2 -246831 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 839-21 chr2 72237533 72237876 + 3 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -89842 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 488-225 chr5 142754089 142754372 + 3 NA intron (NR_110558, intron 1 of 3) MLT1K|LTR|ERVL-MaLR 8630 NR_110558 101926975 Hs.638583 NR_110558 ENSG00000236714 LINC01844 - long intergenic non-protein coding RNA 1844 ncRNA 659-88 chr5 38108576 38108956 + 3 NA intron (NR_147009, intron 2 of 2) L1M5|LINE|L1 -39714 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 447-2 chr1 64290961 64291171 + 3 NA Intergenic L2c|LINE|L2 87443 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 554-207 chr8 127326256 127326531 + 3 NA intron (NR_117099, intron 2 of 3) L1MEf|LINE|L1 -74006 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 490-95 chr15 25236723 25236961 + 3 NA TTS (NR_003303).3 TTS (NR_003303).3 757 NR_003303 100033448 NR_003303 ENSG00000200486 SNORD115-11 HBII-52-11 small nucleolar RNA, C/D box 115-11 snoRNA 158-116 chr8 102929580 102929653 + 3 NA intron (NR_126339, intron 2 of 2) MLT1J|LTR|ERVL-MaLR 65345 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 548-204 chr7 10457218 10457470 + 3 NA intron (NR_147499, intron 2 of 2) L1ME2|LINE|L1 -245332 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 311-129 chr14 43721114 43721309 + 3 NA Intergenic Intergenic 786072 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 376-317 chr5 35046697 35046854 + 3 NA intron (NM_031900, intron 1 of 13) intron (NM_031900, intron 1 of 13) 1174 NM_001306173 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 436-167 chr21 16076729 16077001 + 3 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) 5751 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 369-305 chr4 159115458 159115606 + 3 NA intron (NM_001351724, intron 1 of 30) intron (NM_001351724, intron 1 of 30) 11481 NM_001351724 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 445-179 chr3 119613926 119614162 + 3 NA intron (NM_015900, intron 5 of 10) intron (NM_015900, intron 5 of 10) 13773 NM_001293225 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 772-43 chr5 116339979 116340420 + 3 NA Intergenic L1MA6|LINE|L1 34371 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 321-542 chr8 29246018 29246163 + 3 NA intron (NM_015254, intron 1 of 39) L1MB8|LINE|L1 16980 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 791-65 chr7 64473692 64474107 + 3 NA Intergenic Intergenic 40206 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 487-65 chr12 30580332 30580581 + 3 NA Intergenic Intergenic 96788 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 353-133 chr13 111870918 111871102 + 3 NA Intergenic L1M6|LINE|L1 -22368 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 450-296 chr8 59605265 59605511 + 3 NA Intergenic Intergenic 486178 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 183-87 chr22 43642788 43642856 + 3 NA intron (NM_198856, intron 15 of 29) intron (NM_198856, intron 15 of 29) 126568 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 289-251 chr2 200164941 200165117 + 3 NA Intergenic Intergenic -140850 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 504-28 chr10 82011035 82011229 + 3 NA intron (NR_163253, intron 2 of 10) THE1B|LTR|ERVL-MaLR 133445 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 365-254 chr3 38266728 38266958 + 3 NA intron (NM_004256, intron 1 of 9) intron (NM_004256, intron 1 of 9) 1031 NM_004256 9390 Hs.225941 NM_004256 ENSG00000172940 SLC22A13 OAT10|OCTL1|OCTL3|ORCTL-3|ORCTL3 solute carrier family 22 member 13 protein-coding 507-128 chr2 98787415 98787674 + 3 NA Intergenic L3|LINE|CR1 -15646 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 452-205 chr5 7851616 7851898 + 3 NA promoter-TSS (NM_001089584) promoter-TSS (NM_001089584) -624 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 728-71 chr5 19344821 19345322 + 3 NA Intergenic Intergenic 541201 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 587-122 chr4 93367572 93367810 + 3 NA intron (NM_001286838, intron 7 of 14) CR1-16_AMi|LINE|CR1 -461062 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 894-44 chr7 25297263 25297626 + 3 NA Intergenic Intergenic -68958 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 431-131 chr2 56575784 56575941 + 3 NA Intergenic MIR|SINE|MIR -390092 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 404-232 chr4 72074431 72074631 + 3 NA intron (NM_001144756, intron 2 of 4) Tigger7|DNA|TcMar-Tigger 35399 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 226-335 chr8 37287625 37287748 + 3 NA Intergenic L1ME3G|LINE|L1 206227 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 483-122 chr2 126440717 126440916 + 3 NA Intergenic L1MC4|LINE|L1 -215119 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 531-135 chr20 16131005 16131269 + 3 NA Intergenic Intergenic -145255 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 390-410 chr9 26006032 26006269 + 3 NA Intergenic Intergenic -60525 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 498-15 chr1 210029663 210029837 + 3 NA intron (NM_153262, intron 4 of 7) L1MB3|LINE|L1 91533 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 717-64 chr4 92946409 92946863 + 3 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 642237 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 982-13 chr14 42786787 42787464 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 1180269 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 243-56 chr10 85563677 85563776 + 3 NA Intergenic L1ME3A|LINE|L1 -14005 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 533-241 chr8 140019974 140020319 + 3 NA intron (NM_001160372, intron 18 of 22) L1ME2|LINE|L1 80389 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 464-130 chr2 122581917 122582222 + 3 NA Intergenic L1MB5|LINE|L1 491412 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 882-39 chr6 64789453 64789964 + 3 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -511710 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 536-229 chr8 85007973 85008246 + 3 NA Intergenic L1M7|LINE|L1 -99129 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 240-4 chr1 23814645 23814756 + 3 NA intron (NM_000191, intron 4 of 8) intron (NM_000191, intron 4 of 8) 10729 NM_000191 3155 Hs.533444 NM_000191 ENSG00000117305 HMGCL HL 3-hydroxy-3-methylglutaryl-CoA lyase protein-coding 437-227 chr5 104364243 104364480 + 3 NA Intergenic MER57A-int|LTR|ERV1 -735113 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 435-255 chr8 128524012 128524198 + 3 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 40574 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 505-305 chr8 81414765 81415003 + 3 NA Intergenic L1PA12|LINE|L1 32555 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 232-145 chr18 67373176 67373323 + 3 NA Intergenic Intergenic -143297 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 156-85 chr5 159751922 159751977 + 3 NA Intergenic Intergenic 119435 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 996-5 chr1 188188940 188189381 + 3 NA Intergenic Intergenic 745532 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 434-209 chr4 65098376 65098623 + 3 NA Intergenic L1ME1|LINE|L1 -93999 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 577-187 chr7 144041681 144041905 + 3 NA Intergenic Intergenic -8609 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 819 chr1 196280038 196280404 + 3 NA intron (NM_001287820, intron 23 of 26) intron (NM_001287820, intron 23 of 26) -191506 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 430-330 chr9 26965212 26965363 + 3 NA intron (NM_001099224, intron 2 of 13) intron (NM_001099224, intron 2 of 13) 8875 NM_001349928 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 364-259 chr22 26269677 26269832 + 3 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 100280 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 605-72 chr3 26771109 26771330 + 3 NA Intergenic Intergenic 76662 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 808-35 chr21 32084810 32085199 + 3 NA intron (NR_038033, intron 1 of 1) intron (NR_038033, intron 1 of 1) 1291 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 529-118 chr2 185870717 185871045 + 3 NA Intergenic Intergenic -70730 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 547-196 chr5 155791604 155791864 + 3 NA Intergenic L1PA16|LINE|L1 -535023 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 547-130 chr22 27209496 27209742 + 3 NA Intergenic L1ME4b|LINE|L1 15060 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 595-115 chr3 192329697 192330065 + 3 NA intron (NM_004113, intron 4 of 5) Tigger11a|DNA|TcMar-Tigger 79168 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 517-181 chr3 145634596 145634922 + 3 NA Intergenic L1M5|LINE|L1 434426 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 800-8 chr1 199695330 199695794 + 3 NA Intergenic Intergenic -332148 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 932-5 chr12 5932954 5933581 + 3 NA intron (NM_001278597, intron 1 of 25) intron (NM_001278597, intron 1 of 25) 11992 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 729-80 chr8 131099774 131100197 + 3 NA Intergenic L1PA10|LINE|L1 -59076 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 305-145 chr14 43270205 43270371 + 3 NA Intergenic MIR|SINE|MIR 1236995 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 563-102 chr20 10200774 10201054 + 3 NA intron (NR_040710, intron 1 of 4) intron (NR_040710, intron 1 of 4) -17884 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 547-54 chr12 118665105 118665381 + 3 NA Intergenic Tigger18a|DNA|TcMar-Tigger 96436 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 596-45 chr12 30582989 30583228 + 3 NA Intergenic L2c|LINE|L2 94136 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 470-267 chr8 84814509 84814757 + 3 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 108706 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 420-152 chr2 146731383 146731586 + 3 NA Intergenic Intergenic 144427 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 438-231 chr5 165012952 165013211 + 3 NA Intergenic Intergenic 542802 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 752-68 chr7 41905591 41906004 + 3 NA Intergenic L1MEg|LINE|L1 -202707 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 646-117 chr7 38646439 38646703 + 3 NA Intergenic L2a|LINE|L2 -15004 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 529-41 chr12 3832218 3832625 + 3 NA intron (NM_020367, intron 1 of 7) intron (NM_020367, intron 1 of 7) 40978 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 735-56 chr3 29040897 29041347 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 239817 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 684-108 chr6 26619497 26619878 + 3 NA Intergenic Intergenic 22734 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 537-145 chr21 19743565 19743774 + 3 NA Intergenic Intergenic 156086 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 565-64 chr18 14060795 14061036 + 3 NA Intergenic L1PA16|LINE|L1 71520 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 780-63 chr8 15951303 15951614 + 3 NA Intergenic Intergenic 234814 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 598-17 chr10 18224636 18224958 + 3 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) -35925 NM_000724 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 519-232 chr8 77625927 77626148 + 3 NA Intergenic L2b|LINE|L2 175340 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 195-50 chr12 31716869 31716938 + 3 NA intron (NR_103522, intron 2 of 8) L1ME3A|LINE|L1 12118 NM_001113402 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 820-9 chr11 106610079 106610705 + 3 NA Intergenic L1MB7|LINE|L1 358985 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 920-31 chrX 82631148 82631685 + 3 NA Intergenic L1MA1|LINE|L1 -876874 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 575-64 chr16 13635672 13635957 + 3 NA Intergenic Intergenic -284343 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 671-7 chr1 115848823 115849264 + 3 NA Intergenic L1ME1|LINE|L1 -7917 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 413-127 chr19 36626850 36627046 + 3 NA exon (NM_032825, exon 5 of 5) exon (NM_032825, exon 5 of 5) 21635 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 708-81 chr8 124912488 124912823 + 3 NA Intergenic LTR9D|LTR|ERV1 -29353 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 348-432 chr5 140767390 140767552 + 3 NA Intergenic L1M4|LINE|L1 -18665 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 696-56 chr19 36824913 36825341 + 3 NA intron (NR_040028, intron 3 of 3) intron (NR_040028, intron 3 of 3) 12900 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 365-185 chr2 45309831 45310037 + 3 NA Intergenic Intergenic -54993 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 380-257 chr3 121645949 121646089 + 3 NA intron (NM_001292041, intron 4 of 12) (TA)n|Simple_repeat|Simple_repeat 14884 NM_001292041 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 647-19 chr11 115017122 115017513 + 3 NA Intergenic Intergenic -316260 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 404-267 chr6 4820265 4820428 + 3 NA intron (NM_001368127, intron 1 of 5) intron (NM_001368127, intron 1 of 5) -15752 NM_001143970 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 871-18 chr21 31156113 31156630 + 3 NA intron (NM_001353690, intron 16 of 27) intron (NM_001353690, intron 16 of 27) 4569 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 502-259 chr8 58217034 58217341 + 3 NA Intergenic Intergenic 54914 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 793-16 chr12 129442654 129443088 + 3 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 234270 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 745-79 chr8 144980950 144981391 + 3 NA intron (NR_023392, intron 4 of 4) L1M4b|LINE|L1 -13695 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 677-24 chr12 133181025 133181463 + 3 NA promoter-TSS (NM_001165882) promoter-TSS (NM_001165882) -251 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 492-168 chr3 5287486 5287657 + 3 NA Intergenic L1PB|LINE|L1 -37316 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 529-153 chr4 31726184 31726541 + 3 NA Intergenic MER103C|DNA|hAT-Charlie 219818 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 544-155 chr3 161999933 162000278 + 3 NA Intergenic L1M4c|LINE|L1 503297 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 517-221 chr5 101125726 101126138 + 3 NA Intergenic Intergenic -222650 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 493-138 chr2 44712438 44712713 + 3 NA intron (NM_024766, intron 6 of 10) intron (NM_024766, intron 6 of 10) 226313 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 571-84 chr2 152956167 152956558 + 3 NA Intergenic Intergenic 237725 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 879-26 chr7 54382503 54383051 + 3 NA Intergenic Intergenic 52080 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 459-281 chr7 68921302 68921595 + 3 NA Intergenic Intergenic 676176 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 189-152 chr4 112899433 112899571 + 3 NA intron (NM_001354271, intron 1 of 42) intron (NM_001354271, intron 1 of 42) 38515 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 417-189 chr4 17289081 17289318 + 3 NA Intergenic MIRb|SINE|MIR 31683 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 487-154 chr2 189634815 189635005 + 3 NA Intergenic Intergenic -26489 NM_001353493 110599588 Hs.101364 NM_001353493 ENSG00000286053 ASDURF ASNSD1|ASNSD1-SEP|NS3TP1 ASNSD1 upstream reading frame protein-coding 520-215 chr4 62300043 62300349 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -138431 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 628-7 chr1 71637879 71638235 + 3 NA intron (NM_173808, intron 4 of 6) MIRb|SINE|MIR 198955 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 775-45 chr2 99041818 99042211 + 3 NA intron (NR_146001, intron 15 of 18) L1PB|LINE|L1 99166 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 1062-5 chr12 72843909 72844310 + 3 NA Intergenic L1PA13|LINE|L1 -315081 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 492-68 chr12 99288366 99288573 + 3 NA intron (NM_152788, intron 12 of 25) L1MA3|LINE|L1 -133379 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 345-125 chr12 116193350 116193496 + 3 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) -44769 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 689-62 chr3 82755652 82755987 + 3 NA Intergenic L1MD1|LINE|L1 769677 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 432-26 chr10 16043923 16044152 + 3 NA Intergenic Intergenic -183504 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 613-118 chr6 116390547 116390881 + 3 NA intron (NM_013352, intron 1 of 5) intron (NM_013352, intron 1 of 5) -18995 NR_148944 100287467 Hs.458358 NR_148944 LOC100287467 - uncharacterized LOC100287467 ncRNA 178-32 chr12 12202525 12202592 + 3 NA intron (NM_002336, intron 3 of 22).2 intron (NM_002336, intron 3 of 22).2 64486 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 339-580 chr8 107010230 107010380 + 3 NA Intergenic MER57A-int|LTR|ERV1 -240061 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 1428 chr3 74162997 74163927 + 3 NA Intergenic L1M5|LINE|L1 354218 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 394-214 chr3 63685397 63685640 + 3 NA Intergenic Intergenic 32843 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 1046-11 chr2 222335427 222336066 + 3 NA intron (NR_136642, intron 1 of 3) intron (NR_136642, intron 1 of 3) 15085 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 215-144 chr2 58665372 58665461 + 3 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 144663 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 664-37 chr14 45365032 45365421 + 3 NA Intergenic Intergenic -112024 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 612-57 chr2 14110025 14110371 + 3 NA Intergenic L1M4|LINE|L1 290760 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 277-75 chr11 56523391 56523600 + 3 NA Intergenic MIR|SINE|MIR 19762 NM_001005245 219487 Hs.553632 NM_001005245 ENSG00000255223 OR5M11 OR11-199 olfactory receptor family 5 subfamily M member 11 protein-coding 488-258 chr7 92866492 92866793 + 3 NA intron (NR_110087, intron 2 of 2) intron (NR_110087, intron 2 of 2) -30015 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 356-475 chr8 82467958 82468258 + 3 NA Intergenic L1PB|LINE|L1 -443996 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 540-3 chr1 50217688 50217966 + 3 NA Intergenic Intergenic 107994 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 551-24 chr10 117144949 117145294 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -6851 NM_001112704 11023 Hs.441536 NM_199131 ENSG00000148704 VAX1 MCOPS11 ventral anterior homeobox 1 protein-coding 278-240 chr2 189367068 189367251 + 3 NA Intergenic Intergenic -74274 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 831-44 chr6 128662366 128662851 + 3 NA Intergenic Intergenic -142009 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 565-12 chr10 29914545 29914814 + 3 NA Intergenic Intergenic 144907 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 427-132 chr2 214477084 214477382 + 3 NA intron (NM_001080500, intron 3 of 3) intron (NM_001080500, intron 3 of 3) -32949 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 1137-7 chr6 146024970 146025708 + 3 NA Intergenic Intergenic -2368 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 977-4 chr16 56179011 56179400 + 3 NA intron (NR_027078, intron 2 of 4) L1MB3|LINE|L1 11889 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 734-68 chr7 820155 820458 + 3 NA intron (NM_001171945, intron 2 of 6) L1MB5|LINE|L1 3663 NM_001367637 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 289-196 chr19 2836475 2836662 + 3 NA 3' UTR (NM_001102651, exon 5 of 5) 3' UTR (NM_001102651, exon 5 of 5) -4907 NM_001172775 148254 Hs.47712 NM_152791 ENSG00000186300 ZNF555 - zinc finger protein 555 protein-coding 879-11 chr17 68922088 68922518 + 3 NA intron (NM_001288985, intron 11 of 39) intron (NM_001288985, intron 11 of 39) 33089 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 285-467 chrX 80774606 80774794 + 3 NA intron (NM_153252, intron 6 of 40) L2|LINE|L2 35177 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 577-68 chr15 94430797 94431022 + 3 NA intron (NM_001159643, intron 16 of 19) L2a|LINE|L2 74979 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 930-30 chr6 151330989 151331542 + 3 NA intron (NM_144497, intron 1 of 2) intron (NM_144497, intron 1 of 2) 5734 NM_144497 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 454-84 chr13 53383650 53383835 + 3 NA Intergenic Intergenic -231842 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 553-166 chr4 31354376 31354649 + 3 NA Intergenic Intergenic -152032 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 528-200 chr5 46278204 46278427 + 3 NA Intergenic ALR/Alpha|Satellite|centr -581935 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 456-338 chr9 31957363 31957582 + 3 NA Intergenic L1MCa|LINE|L1 -427131 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 302-421 chr7 99824854 99825049 + 3 NA Intergenic LTR49-int|LTR|ERV1 -3062 NM_001278921 64816 Hs.306220 NM_022820 ENSG00000021461 CYP3A43 - cytochrome P450 family 3 subfamily A member 43 protein-coding 376-144 chr17 71347248 71347409 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -145149 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 750-52 chr3 182455091 182455500 + 3 NA intron (NR_040105, intron 2 of 3) MLT1H1|LTR|ERVL-MaLR 31067 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 892-25 chr21 15572265 15572809 + 3 NA Intergenic MIR|SINE|MIR -157397 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 703-76 chr5 141163950 141164507 + 3 NA Intergenic L1MC4|LINE|L1 8229 NR_001280 54661 Hs.284307 NR_001280 ENSG00000255622 PCDHB17P ME4|PCDH-psi1|PCDHB17 protocadherin beta 17 pseudogene pseudo 467-159 chr21 24335220 24335432 + 3 NA Intergenic L2a|LINE|L2 -13949 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 483-62 chr14 53245832 53246093 + 3 NA Intergenic L2c|LINE|L2 92608 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 449-127 chr2 112988649 112988816 + 3 NA Intergenic L1MA8|LINE|L1 10726 NM_019618 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 363-45 chr10 37537048 37537241 + 3 NA Intergenic Intergenic 65787 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 681-24 chr16 51292263 51292707 + 3 NA intron (NR_039672, intron 6 of 6) HAL1ME|LINE|L1 -141213 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 665-77 chr5 109284572 109284986 + 3 NA intron (NR_149040, intron 3 of 3) L1PBa|LINE|L1 41590 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 522-122 chr2 18039386 18039587 + 3 NA Intergenic Intergenic 160819 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 234-87 chr13 82558858 82558986 + 3 NA Intergenic Intergenic 1323471 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 402-69 chr12 113518456 113518663 + 3 NA Intergenic MIR|SINE|MIR 46556 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 361-440 chr8 67527019 67527222 + 3 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 183286 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 764-13 chr11 54816811 54817240 + 3 NA Intergenic ALR/Alpha|Satellite|centr 110193 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 463-110 chr17 15055551 15055779 + 3 NA Intergenic L1MC3|LINE|L1 24690 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 458-58 chr13 38809222 38809414 + 3 NA intron (NM_207361, intron 6 of 23) L1MA3|LINE|L1 18273 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 480-66 chr14 21105823 21106036 + 3 NA Intergenic MIRc|SINE|MIR -1225 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 463-99 chr15 79732734 79732921 + 3 NA Intergenic Intergenic 164170 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 1165-2 chr10 94622785 94623288 + 3 NA Intergenic MER4A|LTR|ERV1 -60693 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 528-118 chr19 37459011 37459255 + 3 NA intron (NM_001330482, intron 2 of 4) L1MCa|LINE|L1 8311 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 521-181 chr4 97703794 97704041 + 3 NA intron (NM_174952, intron 10 of 10) MLT2A1|LTR|ERVL 336991 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 475-248 chr6 165940888 165941063 + 3 NA intron (NR_026860, intron 1 of 1) intron (NR_026860, intron 1 of 1) -46576 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 221-132 chr19 36752461 36752540 + 3 NA intron (NM_001267779, intron 3 of 3) L1MC5|LINE|L1 20307 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 176-123 chr6 153819293 153819356 + 3 NA Intergenic Intergenic -191172 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 577-188 chr8 59397256 59397524 + 3 NA Intergenic Intergenic 278180 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 358-259 chr20 42063587 42063752 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -445292 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 576-145 chr6 39439694 39440040 + 3 NA intron (NM_001289021, intron 12 of 21) UCON105|Unknown|Unknown -8477 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 431-260 chr6 164056825 164057029 + 3 NA Intergenic Intergenic -385443 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 254-139 chr16 64878491 64878619 + 3 NA Intergenic MIRb|SINE|MIR 243508 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 472-229 chr4 96919013 96919202 + 3 NA Intergenic Intergenic -447819 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 356-328 chr3 85703714 85703865 + 3 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -22693 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 260-62 chr10 105373952 105374048 + 3 NA Intergenic Intergenic 446333 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 327-139 chr13 92996802 92996962 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -48459 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 514-163 chr2 240502912 240503190 + 3 NA intron (NM_001282780, intron 9 of 13) intron (NM_001282780, intron 9 of 13) -46351 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 597-51 chr15 61336573 61336823 + 3 NA Intergenic Intergenic -107396 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 453-74 chr14 89646632 89646869 + 3 NA Intergenic Intergenic -27585 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 266-230 chr22 42625470 42625565 + 3 NA intron (NM_007326, intron 7 of 8) intron (NM_007326, intron 7 of 8) 10272 NR_029422 267010 Hs.574857 NR_029422 ENSG00000276027 RNU12 RNU12-1|RNU12L|RNU12P|dJ222E13.7 RNA, U12 small nuclear snRNA 500-229 chr5 63837803 63838035 + 3 NA Intergenic Intergenic 124373 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 462-255 chr7 7502211 7502487 + 3 NA intron (NM_001037763, intron 11 of 34) intron (NM_001037763, intron 11 of 34) 33524 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 258-343 chr6 53545346 53545518 + 3 NA promoter-TSS (NM_001197115) promoter-TSS (NM_001197115) -331 NM_001197115 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 406-263 chr6 144980557 144980728 + 3 NA Intergenic L1MA7|LINE|L1 574987 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 1155-7 chr9 30189190 30189849 + 3 NA Intergenic Intergenic 218935 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 1282-4 chr6 63828607 63829294 + 3 NA intron (NM_001292009, intron 36 of 43) L1PB1|LINE|L1 22114 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 310-160 chr15 79201631 79201763 + 3 NA intron (NR_038997, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR -8091 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 924-14 chr12 16793937 16794318 + 3 NA Intergenic L2a|LINE|L2 -185913 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 692-17 chr12 10297549 10297952 + 3 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) -6696 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 269-339 chr6 46117431 46117591 + 3 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) 12308 NM_001370649 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 400-251 chr4 65710784 65710964 + 3 NA Intergenic L1MEf|LINE|L1 -40379 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 420-202 chr4 71303369 71303552 + 3 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -35593 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 588-157 chr8 79515005 79515458 + 3 NA Intergenic Intergenic -95886 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 740-9 chr10 13807762 13808310 + 3 NA intron (NM_001318336, intron 3 of 23) AluSz|SINE|Alu -100469 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 595-94 chr2 177919934 177920296 + 3 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) 2722 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 582-122 chr5 82607604 82607915 + 3 NA Intergenic L1MA4A|LINE|L1 -232396 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 1089-4 chr15 56012973 56013417 + 3 NA Intergenic LTR26E|LTR|ERV1 -19583 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 582-94 chr21 29986631 29986870 + 3 NA Intergenic L1MD2|LINE|L1 -46698 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 386-328 chr7 45994751 45994904 + 3 NA Intergenic L1M4|LINE|L1 -73555 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 429-297 chr8 75731656 75731991 + 3 NA Intergenic Intergenic 191855 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 370-19 chr1 168853499 168853697 + 3 NA Intergenic L1MEg|LINE|L1 66657 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 298-252 chr20 18355594 18355811 + 3 NA Intergenic L1M4|LINE|L1 -23347 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 294-363 chr5 16475472 16475639 + 3 NA intron (NM_019000, intron 6 of 6) intron (NM_019000, intron 6 of 6) -9755 NM_033414 90441 Hs.60300 NM_033414 ENSG00000173545 ZNF622 ZPR9 zinc finger protein 622 protein-coding 673-116 chr8 43621210 43621629 + 3 NA Intergenic ALR/Alpha|Satellite|centr 328977 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 505-45 chr11 24275095 24275351 + 3 NA Intergenic Intergenic -221830 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 531-42 chr12 22725206 22725430 + 3 NA Intergenic Intergenic 100147 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 639-127 chrX 101994063 101994495 + 3 NA Intergenic L1PA3|LINE|L1 -62252 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 512-56 chr11 114859674 114859913 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 181266 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 498-69 chr12 65450136 65450395 + 3 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 107046 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 473-170 chr3 26545249 26545423 + 3 NA Intergenic L2b|LINE|L2 -77470 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 426-307 chr9 26103054 26103230 + 3 NA intron (NM_001004352, intron 3 of 6) intron (NM_001004352, intron 3 of 6) 36467 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 201-200 chr5 83290357 83290459 + 3 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -181266 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 235-205 chr20 57971928 57972063 + 3 NA Intergenic Intergenic -31909 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 695-9 chr1 241304145 241304508 + 3 NA intron (NM_001282778, intron 2 of 16) L2a|LINE|L2 51500 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 243-449 chr8 89083779 89083937 + 3 NA Intergenic L1M3|LINE|L1 673853 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 468-27 chr10 37990035 37990248 + 3 NA Intergenic Intergenic -13494 NM_001329657 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 589-39 chr16 84707096 84707402 + 3 NA intron (NM_001272075, intron 2 of 14) L2a|LINE|L2 7249 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 499-223 chr6 53947787 53947988 + 3 NA intron (NR_125842, intron 1 of 3) L1PA13|LINE|L1 17905 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 437-235 chr5 174479558 174479823 + 3 NA intron (NR_125806, intron 2 of 5) L1M4|LINE|L1 143336 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 423-276 chr7 89810640 89810859 + 3 NA Intergenic L1PA17|LINE|L1 -308651 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 393-390 chr9 136391539 136391764 + 3 NA intron (NM_003086, intron 9 of 22) intron (NM_003086, intron 9 of 22) 6786 NM_003086 6621 Hs.113265 NM_003086 ENSG00000165684 SNAPC4 PTFalpha|SNAP190 small nuclear RNA activating complex polypeptide 4 protein-coding 388-107 chr14 43826903 43827098 + 3 NA Intergenic L1PB4|LINE|L1 680283 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 479-171 chr4 102121316 102121522 + 3 NA Intergenic L1MA3|LINE|L1 202893 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 791-14 chr11 50524419 50524974 + 3 NA Intergenic ALR/Alpha|Satellite|centr 115549 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 1005-10 chr2 96425785 96426250 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 79340 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 589-52 chr19 9446782 9447010 + 3 NA Intergenic AluSx4|SINE|Alu -11318 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 951-25 chr5 73347288 73347706 + 3 NA Intergenic L1MB7|LINE|L1 9591 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 480-111 chr17 57804609 57804883 + 3 NA Intergenic L1ME3G|LINE|L1 45298 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 545-191 chr5 123144755 123145091 + 3 NA intron (NM_001136239, intron 3 of 7) (ATCC)n|Simple_repeat|Simple_repeat -54607 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 566-174 chr7 4513828 4514254 + 3 NA Intergenic AluY|SINE|Alu -168254 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 790-18 chr17 41143321 41143844 + 3 NA intron (NM_001277332, intron 2 of 5) LTR49|LTR|ERV1 -3095 NM_030976 81871 Hs.307014 NM_030976 ENSG00000198090 KRTAP4-6 KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 keratin associated protein 4-6 protein-coding 535-105 chr17 50227395 50227736 + 3 NA Intergenic L1MC4|LINE|L1 12871 NR_110806 101927230 Hs.514326 NR_110806 LINC01969 - long intergenic non-protein coding RNA 1969 ncRNA 822-6 chr10 25373952 25374533 + 3 NA intron (NM_020752, intron 2 of 10) L1M5|LINE|L1 -197966 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 731-18 chr11 115056240 115056721 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -277097 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 228-91 chr13 104165122 104165241 + 3 NA Intergenic Intergenic 739981 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 677-29 chr14 51496661 51497003 + 3 NA intron (NM_001042481, intron 1 of 14) MLT1H-int|LTR|ERVL-MaLR 7704 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 724-61 chr4 149157793 149158158 + 3 NA intron (NR_125887, intron 2 of 12) intron (NR_125887, intron 2 of 12) 3680 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 552-102 chr2 45484256 45484467 + 3 NA intron (NM_018079, intron 15 of 20) intron (NM_018079, intron 15 of 20) 126906 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 768-14 chr12 20248268 20248676 + 3 NA Intergenic L1M1|LINE|L1 -120571 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 305-565 chr9 106104220 106104355 + 3 NA Intergenic L2b|LINE|L2 409746 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 443-152 chr2 125428891 125429197 + 3 NA Intergenic Intergenic 688941 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 543-136 chr2 192754615 192754881 + 3 NA intron (NR_152587, intron 3 of 3) MER1B|DNA|hAT-Charlie 4903 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 573-10 chr1 171095859 171096167 + 3 NA intron (NM_001319174, intron 2 of 7) intron (NM_001319174, intron 2 of 7) 5108 NM_001319174 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 556-182 chr5 141351213 141351403 + 3 NA exon (NM_032095, exon 1 of 1) exon (NM_032095, exon 1 of 1) 1047 NM_018922 56104 Hs.368160 NM_018922 ENSG00000254221 PCDHGB1 PCDH-GAMMA-B1 protocadherin gamma subfamily B, 1 protein-coding 427-246 chr7 54460778 54461025 + 3 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -81424 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 394-152 chr2 14195070 14195230 + 3 NA Intergenic Intergenic 205808 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 407-151 chr2 144408868 144409043 + 3 NA intron (NM_001171653, intron 3 of 8) intron (NM_001171653, intron 3 of 8) -75886 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 462-13 chr1 163485840 163486050 + 3 NA Intergenic L1MEc|LINE|L1 -62754 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 403-244 chr5 40007364 40007709 + 3 NA Intergenic L1M3c|LINE|L1 -44755 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 472-160 chr2 106646896 106647195 + 3 NA Intergenic Intergenic 159681 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 397-4 chr1 59573385 59573679 + 3 NA intron (NM_001350794, intron 8 of 14) L1MC4|LINE|L1 57902 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 953-6 chr13 40379033 40379703 + 3 NA intron (NR_024506, intron 5 of 5) L1ME3G|LINE|L1 101638 NR_024505 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 481-257 chr5 169610590 169610894 + 3 NA Intergenic L1MCa|LINE|L1 -26533 NM_004946 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 454-160 chr2 103514771 103514987 + 3 NA Intergenic L1ME1|LINE|L1 -530450 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 552-4 chr1 60806164 60806498 + 3 NA intron (NR_110628, intron 1 of 5) L1M2|LINE|L1 19253 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 660-72 chr4 77982311 77982688 + 3 NA Intergenic Intergenic -74824 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 233-382 chr8 121014536 121014637 + 3 NA Intergenic Intergenic -202540 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 423-171 chr3 3899540 3899717 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR -98753 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 490-209 chr4 178612562 178612754 + 3 NA Intergenic Intergenic -704722 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 358-235 chr2 133698766 133698907 + 3 NA Intergenic MER112|DNA|hAT-Charlie -130373 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 504-144 chr2 191133724 191133955 + 3 NA intron (NM_003151, intron 3 of 23) L1MC2|LINE|L1 17155 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 1135-2 chr12 132975616 132976307 + 3 NA Intergenic L1M1|LINE|L1 -10406 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 247-222 chr2 175950139 175950266 + 3 NA intron (NR_130941, intron 9 of 14) intron (NR_130941, intron 9 of 14) 52065 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 446-34 chr10 29652000 29652249 + 3 NA intron (NM_001323599, intron 3 of 38) L1MB8|LINE|L1 -17153 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 780-46 chr4 163912209 163912716 + 3 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) 285249 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 382-93 chr13 79397760 79398025 + 3 NA intron (NM_022118, intron 1 of 20) L1MEf|LINE|L1 8329 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 642-112 chr8 139093075 139093421 + 3 NA Intergenic Intergenic -179207 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 430-277 chr7 9764545 9764874 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 130439 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 996-19 chr4 46810766 46811323 + 3 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 98201 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 735-20 chr14 25743213 25743678 + 3 NA Intergenic LTR16|LTR|ERVL -693148 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 729-40 chr2 108210022 108210359 + 3 NA intron (NR_131251, intron 1 of 4) L1M2|LINE|L1 7651 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 716-76 chr6 50039752 50040101 + 3 NA Intergenic MIRb|SINE|MIR 10003 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 545-196 chr5 164841131 164841369 + 3 NA Intergenic Intergenic 370971 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 376-177 chr2 53320209 53320386 + 3 NA Intergenic L2a|LINE|L2 -447486 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 406-211 chr4 92701420 92701587 + 3 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 397104 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 289-360 chr5 9179417 9179551 + 3 NA intron (NM_003966, intron 11 of 22) intron (NM_003966, intron 11 of 22) -125589 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 453-217 chr5 158103656 158103857 + 3 NA Intergenic Intergenic -244611 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 277-9 chr1 71389472 71389652 + 3 NA Intergenic L1M1|LINE|L1 308238 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 784-57 chr7 7457895 7458248 + 3 NA intron (NM_001037763, intron 15 of 34) MER58A|DNA|hAT-Charlie 77802 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 324-94 chr11 76600627 76600826 + 3 NA Intergenic Intergenic 69212 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 488-289 chr9 29971735 29972109 + 3 NA Intergenic L1MEf|LINE|L1 436532 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 339-400 chr4 40534984 40535220 + 3 NA intron (NM_001098634, intron 2 of 6) MIR|SINE|MIR -19117 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 646-64 chr2 145033282 145033585 + 3 NA intron (NR_033870, intron 3 of 4) L2c|LINE|L2 365466 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 635-114 chr8 121573009 121573415 + 3 NA Intergenic L1M6|LINE|L1 -66134 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 313-489 chr7 25614377 25614568 + 3 NA intron (NR_157815, intron 3 of 4) GA-rich|Low_complexity|Low_complexity 48668 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 488-298 chrX 43863487 43863744 + 3 NA intron (NM_000898, intron 1 of 14) intron (NM_000898, intron 1 of 14) 18835 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 867-21 chr2 34846923 34847573 + 3 NA Intergenic L1PBa|LINE|L1 169691 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 582-42 chr14 87006510 87006891 + 3 NA Intergenic L1MA9|LINE|L1 100922 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 468-65 chr12 108407937 108408170 + 3 NA Intergenic Intergenic 65636 NR_120483 102723562 Hs.455693 NR_120483 ENSG00000247213 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 597-74 chr2 107039094 107039489 + 3 NA Intergenic L1PA14|LINE|L1 -152182 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 569-31 chr10 104092665 104093037 + 3 NA Intergenic Intergenic -6971 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 1153-12 chr3 120534990 120535470 + 3 NA Intergenic L1PA17|LINE|L1 -61106 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 723-3 chr1 89065937 89066347 + 3 NA promoter-TSS (NM_002053) promoter-TSS (NM_002053) -934 NM_002053 2633 Hs.62661 NM_002053 ENSG00000117228 GBP1 - guanylate binding protein 1 protein-coding 266-301 chr4 102102516 102102633 + 3 NA Intergenic Intergenic 221738 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 955-8 chr16 82983868 82984326 + 3 NA intron (NR_110937, intron 1 of 2) intron (NR_110937, intron 1 of 2) 6201 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 294-222 chr2 84362637 84362804 + 3 NA Intergenic L1PB2|LINE|L1 72038 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 679-8 chr1 230897681 230898032 + 3 NA Intergenic MIR3|SINE|MIR 23010 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 426-25 chr10 59215803 59216082 + 3 NA intron (NM_001143774, intron 1 of 4) L2a|LINE|L2 38475 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 693-55 chr2 51609337 51609873 + 3 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 577004 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 448-30 chr10 26757567 26757745 + 3 NA intron (NM_001178122, intron 7 of 9) intron (NM_001178122, intron 7 of 9) 59955 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 452-298 chrX 39284173 39284388 + 3 NA Intergenic L1MEd|LINE|L1 43082 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 725-3 chr1 98370577 98370905 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 160030 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 448-50 chr11 58388616 58388818 + 3 NA Intergenic Intergenic 14692 NM_001005469 441608 Hs.553826 NM_001005469 ENSG00000172769 OR5B3 OR11-239|OR5B13|OST129 olfactory receptor family 5 subfamily B member 3 protein-coding 513-30 chr10 61196469 61196715 + 3 NA Intergenic Intergenic 180317 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 325-400 chr4 80068758 80068954 + 3 NA intron (NM_001286781, intron 3 of 16) intron (NM_001286781, intron 3 of 16) 4373 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 515-102 chr19 37610019 37610315 + 3 NA intron (NM_001172225, intron 4 of 4) intron (NM_001172225, intron 4 of 4) 15291 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 915-30 chr8 139762576 139763008 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -59669 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 575-30 chr11 42504916 42505191 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -251363 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 327-376 chr4 137619261 137619501 + 3 NA Intergenic AluSp|SINE|Alu 73650 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 706-73 chr7 104798836 104799220 + 3 NA TTS (NR_034142) TTS (NR_034142) 5064 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 439-16 chr1 180615654 180615999 + 3 NA Intergenic Intergenic -16196 NM_001135669 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 644-50 chr20 52889193 52889626 + 3 NA Intergenic L2a|LINE|L2 -82949 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 1181-3 chr10 93124730 93125363 + 3 NA Intergenic Intergenic 51153 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 809-17 chr18 10289548 10290025 + 3 NA Intergenic MamGypLTR1c|LTR|Gypsy 124584 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 784-41 chr3 193416195 193416643 + 3 NA intron (NM_032279, intron 25 of 29) L1M4|LINE|L1 -37666 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 563-162 chr6 123668947 123669252 + 3 NA Intergenic MER41B|LTR|ERV1 -32006 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 480-116 chr17 73513692 73514031 + 3 NA intron (NR_135635, intron 1 of 1) L1ME4b|LINE|L1 178 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 374-149 chr17 77167809 77167974 + 3 NA intron (NM_001143999, intron 3 of 16) LTR10B1|LTR|ERV1 -17322 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 436-276 chr7 1436695 1436858 + 3 NA exon (NM_182924, exon 15 of 17) exon (NM_182924, exon 15 of 17) 22694 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 320-534 chr8 52625849 52626016 + 3 NA intron (NM_001083617, intron 22 of 23) intron (NM_001083617, intron 22 of 23) -60502 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 224-349 chr9 30415117 30415276 + 3 NA Intergenic Intergenic -6742 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 748-39 chr17 54744603 54744984 + 3 NA Intergenic Intergenic -155898 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 784-8 chr10 39125490 39125983 + 3 NA Intergenic ALR/Alpha|Satellite|centr 429140 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 662-64 chr3 183716727 183717216 + 3 NA intron (NM_001351371, intron 2 of 21) AluSx1|SINE|Alu 6732 NM_001351369 55689 Hs.632575 NM_018023 ENSG00000163872 YEATS2 - YEATS domain containing 2 protein-coding 414-210 chr3 74241269 74241447 + 3 NA Intergenic Intergenic 279782 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 620-121 chr6 124565864 124566277 + 3 NA intron (NM_001300738, intron 4 of 7) LTR82A|LTR|ERVL 283065 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 516-262 chr8 140962898 140963277 + 3 NA intron (NM_001352719, intron 1 of 32) intron (NM_001352719, intron 1 of 32) 37917 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 1263-5 chr22 32707149 32707900 + 3 NA intron (NM_003490, intron 6 of 13) MIRb|SINE|MIR -93292 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 417-59 chr12 45146028 45146283 + 3 NA Intergenic Intergenic 69851 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 346-326 chr3 120664840 120665085 + 3 NA intron (NM_000187, intron 4 of 13) intron (NM_000187, intron 4 of 13) 17277 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 642-83 chr4 71600699 71601078 + 3 NA Intergenic Intergenic 183191 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 328-387 chr4 27038211 27038396 + 3 NA Intergenic L1PB1|LINE|L1 177462 NM_001169118 57620 Hs.744950 NM_020860 ENSG00000109689 STIM2 - stromal interaction molecule 2 protein-coding 737-23 chr14 44779100 44779476 + 3 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 19838 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 348-534 chr8 124093981 124094166 + 3 NA intron (NM_001039112, intron 34 of 40) intron (NM_001039112, intron 34 of 40) -53291 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 496-125 chr19 34683548 34683914 + 3 NA intron (NM_001012320, intron 4 of 4) intron (NM_001012320, intron 4 of 4) 6053 NM_001289189 55900 Hs.436350 NM_018443 ENSG00000089335 ZNF302 HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 zinc finger protein 302 protein-coding 231-378 chr9 35019943 35020062 + 3 NA Intergenic MER4-int|LTR|ERV1 -21093 NM_001040412 138724 Hs.148250 NM_203299 ENSG00000174038 C9orf131 - chromosome 9 open reading frame 131 protein-coding 508-29 chr10 64392608 64392827 + 3 NA Intergenic Intergenic -432811 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 503-314 chrX 99791562 99791760 + 3 NA Intergenic L1PA16|LINE|L1 618612 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 373-108 chr14 47739837 47740008 + 3 NA Intergenic Intergenic 21182 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 896-33 chr7 9009270 9009644 + 3 NA Intergenic L1MB7|LINE|L1 575848 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 565-63 chr18 13458817 13459055 + 3 NA intron (NM_181482, intron 4 of 5) MLT1D|LTR|ERVL-MaLR -1011 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 470-22 chr10 32694976 32695175 + 3 NA intron (NM_001321115, intron 25 of 43) intron (NM_001321115, intron 25 of 43) 206397 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 475-74 chr14 38477084 38477341 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -221119 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 407-72 chr13 57666360 57666639 + 3 NA exon (NM_001040429, exon 2 of 4) exon (NM_001040429, exon 2 of 4) 34755 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 816-51 chr9 34813752 34814220 + 3 NA Intergenic Intergenic 24600 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 646-73 chr20 59543714 59544043 + 3 NA Intergenic L1M4b|LINE|L1 -33631 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 234-6 chr1 57973494 57973589 + 3 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 112960 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 601-58 chr17 52180666 52181087 + 3 NA Intergenic L1MC5|LINE|L1 -20859 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 721-93 chrX 75615820 75616157 + 3 NA Intergenic L1MD1|LINE|L1 -92486 NM_001146256 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 879-15 chr2 80920308 80920748 + 3 NA Intergenic L1MA2|LINE|L1 546418 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 514-73 chr13 87036429 87036729 + 3 NA Intergenic MER49|LTR|ERV1 124659 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 586-57 chr16 49724083 49724375 + 3 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) -59905 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 565-18 chr10 99184143 99184403 + 3 NA intron (NM_021828, intron 2 of 11) AluSz|SINE|Alu 51602 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 390-112 chr14 89643547 89643772 + 3 NA Intergenic Intergenic -24494 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 570-182 chr7 85376965 85377344 + 3 NA Intergenic Intergenic -43968 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 579-94 chr21 30411623 30411845 + 3 NA Intergenic L1PA16|LINE|L1 14192 NM_181622 337960 Hs.553687 NM_181622 ENSG00000240432 KRTAP13-3 KAP13.3 keratin associated protein 13-3 protein-coding 397-163 chr2 103260806 103260986 + 3 NA Intergenic Intergenic -276467 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 382-302 chr4 92120568 92120844 + 3 NA Intergenic Intergenic 156596 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 696-12 chr10 23421671 23422085 + 3 NA Intergenic Intergenic -17391 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 724-35 chr2 67746686 67747023 + 3 NA Intergenic L2c|LINE|L2 78708 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 493-96 chr15 79767005 79767296 + 3 NA Intergenic LTR78B|LTR|ERV1 129847 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 405-254 chr5 100004967 100005133 + 3 NA Intergenic Tigger3|DNA|TcMar-Tigger 383204 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 485-63 chr13 44291615 44291915 + 3 NA Intergenic Intergenic -81885 NM_001346980 387923 Hs.377972 NM_001010897 ENSG00000151778 SERP2 C13orf21|bA269C23.1 stress associated endoplasmic reticulum protein family member 2 protein-coding 471-150 chr20 38934859 38935158 + 3 NA intron (NM_030919, intron 1 of 3) intron (NM_030919, intron 1 of 3) 8591 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 446-317 chr8 136431715 136431925 + 3 NA Intergenic L1M1|LINE|L1 -98978 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 467-74 chr13 112060756 112060945 + 3 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -6299 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 503-4 chr1 14351622 14351893 + 3 NA intron (NR_149058, intron 3 of 4) ORSL-2b|DNA|hAT-Tip100 68216 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 530-115 chr2 22713162 22713414 + 3 NA Intergenic L1PA17|LINE|L1 176809 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 347-416 chr5 145437779 145437945 + 3 NA Intergenic Intergenic 397480 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 485-244 chr6 65538432 65538619 + 3 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 41279 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 534-168 chr3 144020632 144020942 + 3 NA Intergenic THE1A-int|LTR|ERVL-MaLR 47706 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 763-51 chr5 37184132 37184437 + 3 NA intron (NM_023073, intron 25 of 51) intron (NM_023073, intron 25 of 51) -64762 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 587-133 chr5 60537610 60537955 + 3 NA intron (NR_024617, intron 3 of 3) L1MB5|LINE|L1 -41496 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 596-124 chr3 107611234 107611601 + 3 NA intron (NM_001276286, intron 2 of 16) L1MA3|LINE|L1 88455 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 930-33 chr8 129284960 129285479 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -43979 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 669-24 chr14 49018563 49018953 + 3 NA Intergenic Intergenic 567622 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 680-91 chr4 100312756 100313101 + 3 NA Intergenic Intergenic 82319 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 384-346 chr7 36811990 36812226 + 3 NA Intergenic Intergenic -87559 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 838-8 chr11 20194830 20195276 + 3 NA Intergenic Intergenic -34578 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 521-219 chr6 94840164 94840362 + 3 NA Intergenic L1M5|LINE|L1 737188 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 1118-22 chr8 142847240 142847959 + 3 NA TTS (NM_002066) TTS (NM_002066) 12798 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 857-46 chr5 150949721 150950425 + 3 NA Intergenic Intergenic -3489 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 360-419 chr6 131537803 131537962 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR -35344 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 893-9 chr11 102559535 102559986 + 3 NA Intergenic Intergenic -29013 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 808-50 chr6 168984849 168985190 + 3 NA Intergenic L1MC|LINE|L1 -20637 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 482-84 chr15 78851533 78851773 + 3 NA Intergenic Intergenic -21128 NM_001265603 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 589-36 chr15 79708814 79709019 + 3 NA Intergenic L1MA4|LINE|L1 188081 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 623-35 chr15 24049280 24049617 + 3 NA intron (NR_126392, intron 4 of 5) intron (NR_126392, intron 4 of 5) 74301 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 397-3 chr1 55974697 55974897 + 3 NA Intergenic L5|LINE|RTE-X 29710 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 478-82 chr14 69923166 69923401 + 3 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) 43867 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 1024-13 chr2 50271563 50271970 + 3 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 75988 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 419-302 chr8 130964362 130964577 + 3 NA intron (NM_001115, intron 2 of 17) Tigger13a|DNA|TcMar-Tigger 76440 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 461-197 chr4 78030166 78030367 + 3 NA Intergenic Intergenic -27057 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 719-26 chr14 54102235 54102615 + 3 NA Intergenic Intergenic -145534 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 950-32 chr9 79035924 79036586 + 3 NA Intergenic Intergenic 109411 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 437-168 chr3 17487940 17488128 + 3 NA intron (NM_001349081, intron 2 of 21) L1MC2|LINE|L1 211986 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 857-19 chr14 63230244 63230625 + 3 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 25991 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 972-22 chr6 61556148 61556808 + 3 NA intron (NR_146870, intron 14 of 15) Charlie1a|DNA|hAT-Charlie -17652 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 373-314 chr5 27912492 27912650 + 3 NA Intergenic Intergenic 375094 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 424-123 chr2 17810526 17810782 + 3 NA Intergenic MIRc|SINE|MIR -5806 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 675-2 chr1 41440955 41441369 + 3 NA Intergenic Intergenic 43521 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 306-436 chr6 66810354 66810496 + 3 NA Intergenic Intergenic 1022546 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 513-4 chr1 68783583 68783849 + 3 NA Intergenic MIR|SINE|MIR -272182 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 402-153 chr2 78328097 78328255 + 3 NA Intergenic Intergenic -37445 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 299-3 chr1 14840044 14840233 + 3 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -83991 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 359-42 chr10 17051389 17051573 + 3 NA intron (NM_001081, intron 22 of 66) L1ME2|LINE|L1 78336 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 706-71 chr7 53413296 53413712 + 3 NA Intergenic L2|LINE|L2 377871 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 508-264 chrX 57621356 57621637 + 3 NA Intergenic L1PA10|LINE|L1 29660 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 369-360 chr6 122695447 122695584 + 3 NA intron (NM_181795, intron 3 of 4) intron (NM_181795, intron 3 of 4) 42786 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 678-47 chr2 34342283 34342668 + 3 NA Intergenic LTR16B2|LTR|ERVL 275249 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 497-263 chr7 54429673 54429861 + 3 NA Intergenic Intergenic 99070 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 526-207 chr5 130594495 130594840 + 3 NA Intergenic L1MA5|LINE|L1 570589 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 632-124 chr8 135899338 135899681 + 3 NA Intergenic Intergenic 442053 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 551-223 chr8 125535722 125536103 + 3 NA Intergenic MIRb|SINE|MIR 103703 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 366-144 chr15 90338356 90338530 + 3 NA Intergenic Intergenic 11004 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 342-456 chr6 62437337 62437510 + 3 NA Intergenic L1PB1|LINE|L1 -151196 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 393-8 chr1 60588162 60588322 + 3 NA intron (NR_146508, intron 3 of 7) L3|LINE|CR1 34443 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 534-96 chr18 46515991 46516179 + 3 NA intron (NM_001145472, intron 16 of 23) MER89|LTR|ERV1 3001 NM_001173129 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 397-260 chr5 86761149 86761363 + 3 NA Intergenic Intergenic 14438 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 520-75 chr13 73648473 73648716 + 3 NA Intergenic Intergenic 84350 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 501-253 chr8 53012069 53012367 + 3 NA Intergenic L1MA5A|LINE|L1 72310 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 319-536 chr8 95399006 95399200 + 3 NA intron (NR_038209, intron 2 of 3) intron (NR_038209, intron 2 of 3) -129902 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 530-83 chr15 60928170 60928604 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 246818 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 578-182 chr8 124249326 124249672 + 3 NA Intergenic Intergenic -2101 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 495-257 chr8 107039695 107039864 + 3 NA Intergenic L1MC4|LINE|L1 -269535 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 182-140 chr5 80613876 80614005 + 3 NA intron (NR_125754, intron 1 of 1) L1MC5a|LINE|L1 8584 NR_125754 103689917 Hs.740035 NR_125754 ENSG00000251221 LINC01337 TCONS_00009713 long intergenic non-protein coding RNA 1337 ncRNA 447-182 chr3 143671069 143671329 + 3 NA intron (NM_173653, intron 5 of 15) intron (NM_173653, intron 5 of 15) 177269 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 570-48 chr12 13687920 13688280 + 3 NA intron (NM_000834, intron 3 of 12) MIRb|SINE|MIR 292256 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 500-38 chr10 112841853 112842033 + 3 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 18447 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 457-70 chr14 71942474 71942723 + 3 NA intron (NM_001370288, intron 1 of 16) MIRc|SINE|MIR 9071 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 411-254 chr6 82932203 82932497 + 3 NA intron (NR_146807, intron 10 of 10) intron (NR_146807, intron 10 of 10) 133491 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 441-245 chr7 38649102 38649257 + 3 NA Intergenic L1PA7|LINE|L1 -17612 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 536-155 chr22 42932194 42932455 + 3 NA intron (NM_001184970, intron 1 of 10) L2a|LINE|L2 14717 NM_007229 11252 Hs.162877 NM_007229 ENSG00000100266 PACSIN2 SDPII protein kinase C and casein kinase substrate in neurons 2 protein-coding 617-27 chr12 112606068 112606418 + 3 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 31007 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 320-18 chr1 92415129 92415312 + 3 NA Intergenic AluJo|SINE|Alu 68734 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 437-188 chr4 31547697 31547911 + 3 NA intron (NR_149121, intron 1 of 2) intron (NR_149121, intron 1 of 2) 41260 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 928-14 chr2 22620861 22621423 + 3 NA Intergenic Intergenic 84663 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 827-53 chr8 37116593 37117087 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 332466 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 313-534 chr8 113449192 113449368 + 3 NA Intergenic Intergenic -12341 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 511-226 chr6 48203919 48204158 + 3 NA Intergenic Intergenic -135349 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 588-104 chr3 128505896 128506185 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -1795 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 512-259 chr7 64518451 64518721 + 3 NA Intergenic L1MA8|LINE|L1 44485 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 753-62 chr8 137223600 137223967 + 3 NA Intergenic Intergenic 189805 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 574-113 chr3 150675054 150675356 + 3 NA intron (NM_001308234, intron 10 of 13) L1MEg|LINE|L1 -28359 NR_121675 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 424-211 chr5 9432519 9432676 + 3 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -78736 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 472-104 chr15 82783375 82783611 + 3 NA intron (NM_001007122, intron 3 of 12) intron (NM_001007122, intron 3 of 12) 22576 NM_001281805 123722 Hs.719372 NM_001007122 ENSG00000186628 FSD2 SPRYD1 fibronectin type III and SPRY domain containing 2 protein-coding 536-197 chr6 63139423 63139658 + 3 NA Intergenic L1M1|LINE|L1 180437 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 633-118 chr7 68354298 68354627 + 3 NA Intergenic Intergenic 334209 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 349-271 chr2 123169459 123169600 + 3 NA Intergenic Intergenic -96048 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 566-158 chr5 84709339 84709564 + 3 NA Intergenic Intergenic -324571 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 1258-5 chr20 17121145 17121834 + 3 NA Intergenic L1MC3|LINE|L1 -104618 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 587-114 chr4 32123699 32124065 + 3 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -101460 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 642-110 chr8 134380046 134380426 + 3 NA Intergenic Intergenic -217835 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 222-351 chr7 92191778 92191883 + 3 NA Intergenic L1PA16|LINE|L1 12268 NR_031616 100302218 NR_031616 ENSG00000221520 MIR1285-1 MIRN1285-1|hsa-mir-1285-1 microRNA 1285-1 ncRNA 544-41 chr11 22592431 22592692 + 3 NA Intergenic Intergenic 33280 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 552-163 chr4 159607945 159608196 + 3 NA Intergenic Intergenic 169714 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 414-12 chr1 82038799 82039047 + 3 NA Intergenic L1MEd|LINE|L1 236470 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 949-6 chr15 85720504 85720875 + 3 NA intron (NM_007200, intron 23 of 36) intron (NM_007200, intron 23 of 36) 38036 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 450-208 chr3 135849002 135849190 + 3 NA Intergenic L1MEd|LINE|L1 -116632 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 610-167 chr8 4534056 4534432 + 3 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 460670 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 467-187 chr3 130855532 130855779 + 3 NA intron (NM_001199181, intron 1 of 26) intron (NM_001199181, intron 1 of 26) 5060 NM_001199181 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 176-90 chr3 151038119 151038180 + 3 NA intron (NR_024066, intron 1 of 5) MamRep605|LTR?|LTR? -48649 NM_053002 116931 Hs.744234 NM_053002 ENSG00000144893 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12L protein-coding 355-365 chr4 59598139 59598343 + 3 NA Intergenic L1MA6|LINE|L1 584668 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 850-37 chr5 68558228 68558766 + 3 NA Intergenic Intergenic 265920 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 374-104 chr14 100431320 100431574 + 3 NA intron (NM_001350949, intron 2 of 6) intron (NM_001350949, intron 2 of 6) 54962 NM_024515 79446 Hs.497599 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 421-149 chr2 125065533 125065739 + 3 NA Intergenic L1ME4b|LINE|L1 1040349 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 574-66 chr2 16519001 16519281 + 3 NA Intergenic Intergenic 146693 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 244-294 chr5 35727391 35727492 + 3 NA intron (NM_024867, intron 20 of 36) intron (NM_024867, intron 20 of 36) 109578 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 251-303 chr5 60443977 60444073 + 3 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -43688 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 365-259 chr3 59639801 59639963 + 3 NA intron (NR_149028, intron 3 of 3) MER21C|LTR|ERVL 18615 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 543-63 chr12 70072025 70072363 + 3 NA Intergenic Intergenic -170836 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 269-233 chr21 27277472 27277601 + 3 NA Intergenic L1ME3Cz|LINE|L1 -310448 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 616-70 chr19 37462451 37462767 + 3 NA intron (NM_001330482, intron 2 of 4) L2a|LINE|L2 4835 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 408-230 chr4 44028500 44028759 + 3 NA Intergenic L1MA4A|LINE|L1 11567 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 476-87 chr14 75521730 75522050 + 3 NA promoter-TSS (NM_006399) promoter-TSS (NM_006399) -579 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 460-302 chr9 28127756 28127917 + 3 NA intron (NM_152570, intron 5 of 6) MIRc|SINE|MIR -553970 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 550-38 chr10 109842237 109842421 + 3 NA Intergenic Intergenic 80917 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 527-26 chr10 53715473 53715732 + 3 NA Intergenic MIRb|SINE|MIR -770628 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 434-205 chr4 43714572 43714819 + 3 NA Intergenic Intergenic -222152 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 419-228 chr5 38396077 38396245 + 3 NA intron (NM_152403, intron 6 of 21) intron (NM_152403, intron 6 of 21) 7310 NR_102749 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 536-239 chr8 126262688 126263017 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR -62643 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 497-305 chr9 134610350 134610537 + 3 NA Intergenic L1M5|LINE|L1 -31362 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 421-313 chr8 136973142 136973362 + 3 NA Intergenic L1MD3|LINE|L1 440336 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 441-66 chr13 51081863 51082123 + 3 NA TTS (NR_102432) TTS (NR_102432) -15836 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 495-218 chr6 76574093 76574390 + 3 NA intron (NR_149101, intron 2 of 2) intron (NR_149101, intron 2 of 2) 19382 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 655-72 chr20 45498663 45499008 + 3 NA Intergenic Intergenic 16787 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 366-364 chr5 180224243 180224413 + 3 NA Intergenic L1MEg2|LINE|L1 -15117 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 577-33 chr10 105522735 105523003 + 3 NA Intergenic L2a|LINE|L2 297464 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 470-14 chr1 207249436 207249672 + 3 NA Intergenic Intergenic -72124 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 529-185 chr5 124467520 124467757 + 3 NA Intergenic L1MA9|LINE|L1 -29118 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 529-183 chr5 123206957 123207161 + 3 NA Intergenic Intergenic -116743 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 538-141 chr21 19088647 19088946 + 3 NA Intergenic Intergenic -328984 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 351-478 chr8 60112859 60113084 + 3 NA Intergenic L1ME2z|LINE|L1 168429 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 818-51 chr5 129874391 129874959 + 3 NA Intergenic Intergenic -29790 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 1279-4 chr2 22334670 22335414 + 3 NA Intergenic Intergenic -201437 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 777-22 chr14 61016308 61016669 + 3 NA intron (NR_033344, intron 4 of 16) MIR3|SINE|MIR -34798 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 408-277 chr5 120784865 120785063 + 3 NA Intergenic Intergenic 253500 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 763-21 chr15 79215938 79216427 + 3 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) 6394 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 261-204 chr2 203673754 203673867 + 3 NA Intergenic Intergenic -32665 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 562-214 chr8 83966886 83967340 + 3 NA Intergenic L1M4|LINE|L1 -215674 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1053-3 chr11 109193372 109194153 + 3 NA Intergenic L1M8|LINE|L1 -228428 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 517-11 chr1 171367104 171367315 + 3 NA Intergenic Intergenic 28313 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 524-142 chr22 48008082 48008475 + 3 NA Intergenic L1MC3|LINE|L1 -266086 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 520-223 chr4 173847941 173848248 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -49179 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 448-278 chr8 67549506 67549734 + 3 NA intron (NM_020361, intron 2 of 10) L1MA10|LINE|L1 196740 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 583-28 chr11 27280166 27280485 + 3 NA Intergenic Intergenic -60212 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 440-61 chr13 94782516 94782783 + 3 NA intron (NR_110754, intron 2 of 4) L1MB5|LINE|L1 21708 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 270-312 chr5 109230841 109231002 + 3 NA Intergenic LTR40a|LTR|ERVL 95448 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 408-216 chr3 125414336 125414537 + 3 NA Intergenic Intergenic -39082 NM_001348425 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 479-58 chr14 53838863 53839168 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 109469 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 571-141 chr5 133310584 133310829 + 3 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 117000 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 677-54 chr22 32694749 32695100 + 3 NA intron (NM_003490, intron 6 of 13) L1M7|LINE|L1 -105892 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 603-59 chr16 79472112 79472314 + 3 NA Intergenic Intergenic 128524 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 605-53 chr2 111075842 111076128 + 3 NA intron (NM_001371254, intron 17 of 18) L1MD2|LINE|L1 39603 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 896-34 chr7 34263159 34263574 + 3 NA Intergenic Intergenic 357827 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 397-346 chr8 131787453 131787662 + 3 NA Intergenic Intergenic -116536 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 426-251 chr5 127466191 127466399 + 3 NA Intergenic Intergenic -51345 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 593-7 chr1 104901985 104902330 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 716778 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 591-129 chr5 44479659 44479978 + 3 NA Intergenic Intergenic 30464 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 583-115 chr3 170786458 170786892 + 3 NA Intergenic L1ME2z|LINE|L1 83520 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 375-29 chr1 237400486 237400722 + 3 NA intron (NM_001035, intron 10 of 104) MamGypLTR1c|LTR|Gypsy -70515 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 639-123 chr9 114753982 114754335 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR 38372 NM_001204344 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 455-128 chr2 107341615 107341931 + 3 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 7752 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 465-230 chr5 87598576 87598777 + 3 NA Intergenic L1PREC2|LINE|L1 -63366 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 902-4 chr10 82317035 82317587 + 3 NA intron (NM_001370082, intron 3 of 10) L2a|LINE|L2 -84391 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 672-8 chr10 32775157 32775558 + 3 NA intron (NM_001321115, intron 29 of 43) intron (NM_001321115, intron 29 of 43) 126115 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 949-21 chr7 54731927 54732572 + 3 NA Intergenic Intergenic 26962 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 474-297 chr8 127005558 127005875 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger -7438 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 474-231 chr5 46307656 46307885 + 3 NA Intergenic ALR/Alpha|Satellite|centr -611390 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 543-95 chr17 13807980 13808241 + 3 NA Intergenic Intergenic -206181 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 611-105 chr4 31371074 31371450 + 3 NA Intergenic Intergenic -135282 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 680-95 chr5 30734912 30735256 + 3 NA Intergenic Intergenic -458602 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1150-4 chr14 71769190 71769776 + 3 NA Intergenic L1M4|LINE|L1 -162688 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 469-277 chr8 63719483 63719721 + 3 NA Intergenic Intergenic -49828 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 358-214 chr2 77939295 77939517 + 3 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 15620 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 558-40 chr11 115588423 115588641 + 3 NA Intergenic L2c|LINE|L2 -84117 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 387-138 chr17 15036780 15036925 + 3 NA intron (NR_135638, intron 1 of 1) intron (NR_135638, intron 1 of 1) 5877 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 622-131 chr7 89943132 89943421 + 3 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -176124 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 464-163 chr3 82510851 82511072 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 524819 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 693-95 chr7 130915086 130915396 + 3 NA intron (NR_109780, intron 2 of 3) intron (NR_109780, intron 2 of 3) 1777 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 444-18 chr1 213738977 213739238 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -185642 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 553-211 chr7 40900032 40900291 + 3 NA Intergenic Intergenic 79778 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 1071-4 chr11 54933688 54934446 + 3 NA Intergenic ALR/Alpha|Satellite|centr 227235 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 341-390 chr4 104973227 104973473 + 3 NA Intergenic Intergenic -172525 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 436-30 chr10 35584603 35584791 + 3 NA Intergenic Intergenic -20644 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 479-236 chr7 121502392 121502634 + 3 NA Intergenic LTR39|LTR|ERV1 -106145 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 467-52 chr11 88609525 88609778 + 3 NA intron (NM_001143831, intron 3 of 8) L1P4|LINE|L1 105075 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 692-24 chr12 113689065 113689335 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 84483 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 465-70 chr13 57877180 57877398 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 245545 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 498-161 chr3 1713406 1713617 + 3 NA Intergenic Intergenic -385292 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 369-183 chr2 16147230 16147459 + 3 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat 96917 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 598-119 chr6 40579804 40580083 + 3 NA intron (NM_020737, intron 1 of 2) X7A_LINE|LINE|CR1 7421 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 572-80 chr2 7078005 7078236 + 3 NA promoter-TSS (NR_110252) promoter-TSS (NR_110252) -240 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 381-37 chr10 17126895 17127062 + 3 NA intron (NM_001081, intron 3 of 66) intron (NM_001081, intron 3 of 66) 2839 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 552-176 chr5 116921972 116922303 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -159928 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 532-197 chr5 3583926 3584285 + 3 NA Intergenic Intergenic -11727 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 598-23 chr10 59055664 59056081 + 3 NA Intergenic Intergenic 56354 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 687-42 chr16 26834625 26834952 + 3 NA Intergenic L1MCa|LINE|L1 -232139 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 369-77 chr12 15669919 15670146 + 3 NA intron (NM_004447, intron 4 of 20) intron (NM_004447, intron 4 of 20) 119356 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 259-280 chr4 43117631 43117743 + 3 NA Intergenic L1MA1|LINE|L1 224421 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 446-76 chr12 44120337 44120580 + 3 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 284377 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 413-236 chr5 34603303 34603580 + 3 NA Intergenic Intergenic -52887 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 618-81 chr3 31471307 31471811 + 3 NA Intergenic L2a|LINE|L2 -61366 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 532-229 chr6 121941550 121941797 + 3 NA Intergenic L1PA15|LINE|L1 -457878 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 591-118 chr4 157205619 157206052 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -14749 NM_001083619 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 467-287 chr8 124047706 124047905 + 3 NA intron (NR_103547, intron 3 of 4) intron (NR_103547, intron 3 of 4) -7023 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 434-320 chr9 129300922 129301131 + 3 NA Intergenic L1MDa|LINE|L1 18610 NR_121587 101929331 Hs.522428 NR_121587 ENSG00000224307 LOC101929331 - uncharacterized LOC101929331 ncRNA 453-142 chr20 14117248 14117480 + 3 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 121848 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 639-100 chr5 127756448 127756764 + 3 NA intron (NM_001317938, intron 3 of 6) LTR8|LTR|ERV1 53217 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 617-123 chr7 92945403 92945702 + 3 NA Intergenic Intergenic -108925 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 473-189 chr4 43598783 43598975 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -106336 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 577-88 chr2 5557214 5557568 + 3 NA Intergenic Intergenic 133727 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 514-282 chr8 77903711 77903884 + 3 NA Intergenic Intergenic 453100 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 827 chr1 36896641 36896968 + 3 NA intron (NM_000831, intron 1 of 15) L1MA2|LINE|L1 137711 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 512-249 chr7 8473601 8473851 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 40117 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 875-18 chr2 105959868 105960317 + 3 NA Intergenic L2a|LINE|L2 -105596 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 404-21 chr1 183424498 183424710 + 3 NA Intergenic Intergenic -6224 NM_015039 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 514-17 chr1 221403961 221404201 + 3 NA Intergenic L1M4|LINE|L1 -67785 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 692-15 chr11 98662219 98662624 + 3 NA Intergenic AluSx4|SINE|Alu -358528 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 452-89 chr15 57116030 57116295 + 3 NA intron (NM_207038, intron 5 of 19) MIRb|SINE|MIR -103268 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 761-71 chr8 14726097 14726515 + 3 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 127204 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 435-63 chr12 40633814 40634101 + 3 NA Intergenic Intergenic -58482 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 491-176 chr3 178923267 178923486 + 3 NA Intergenic L1PA5|LINE|L1 -62971 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 396-334 chr7 64474616 64474826 + 3 NA Intergenic Intergenic 41028 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 851-28 chr20 55944306 55944980 + 3 NA Intergenic Intergenic 60876 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 530-67 chr14 23822656 23822857 + 3 NA Intergenic L1PA13|LINE|L1 -131014 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 480-91 chr15 46335565 46335844 + 3 NA Intergenic L1PA17|LINE|L1 630509 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 186-22 chr11 79363669 79363732 + 3 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 38409 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 418-28 chr10 38491925 38492123 + 3 NA Intergenic Intergenic 63878 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 517-58 chr12 38251584 38251816 + 3 NA Intergenic Intergenic -65074 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 247-231 chr20 22777265 22777383 + 3 NA Intergenic Intergenic -91980 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 517-51 chr11 112858179 112858484 + 3 NA Intergenic Intergenic -103089 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 479-239 chr8 50321926 50322135 + 3 NA intron (NR_135797, intron 2 of 20) L1M1|LINE|L1 157899 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 529-61 chr13 109970408 109970636 + 3 NA Intergenic Intergenic -82763 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 692-43 chr18 63188265 63188779 + 3 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 130858 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 531 chr1 35490517 35490736 + 3 NA intron (NM_024874, intron 3 of 20) L1ME1|LINE|L1 66777 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 1336-2 chr19 12379082 12379876 + 3 NA Intergenic AluSc|SINE|Alu -13796 NM_030824 79973 Hs.253193 NM_030824 ENSG00000198342 ZNF442 - zinc finger protein 442 protein-coding 474-194 chr4 376967 377146 + 3 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 26899 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 537-144 chr20 62114087 62114380 + 3 NA Intergenic AluJo|SINE|Alu -8242 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 419-313 chrX 40334123 40334375 + 3 NA Intergenic L1ME5|LINE|L1 71332 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 484-240 chr6 122738425 122738728 + 3 NA Intergenic Intergenic -10625 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 386-9 chr1 103110078 103110318 + 3 NA Intergenic Intergenic -1676 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 324-227 chr18 42524039 42524253 + 3 NA intron (NR_046454, intron 6 of 6) intron (NR_046454, intron 6 of 6) 337478 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 300-487 chr9 29391756 29391951 + 3 NA Intergenic L1MA9|LINE|L1 -178252 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 527-261 chr8 67800622 67800861 + 3 NA Intergenic Intergenic -54381 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 518-292 chr8 28223935 28224120 + 3 NA Intergenic L1PA15|LINE|L1 -93241 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 512-29 chr10 32491447 32491738 + 3 NA intron (NR_109826, intron 9 of 16) MIRb|SINE|MIR 45452 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 339-426 chr4 139625985 139626228 + 3 NA Intergenic L1MA4|LINE|L1 -39662 NM_001204366 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 471-67 chr12 65650622 65650930 + 3 NA Intergenic Intergenic -8404 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 1401-4 chr5 1717300 1718142 + 3 NA Intergenic L1M5|LINE|L1 -8853 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 413-311 chr8 119981039 119981214 + 3 NA intron (NM_022783, intron 4 of 8) MIR|SINE|MIR 107404 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 510-123 chr19 37713055 37713277 + 3 NA intron (NM_032689, intron 1 of 4) intron (NM_032689, intron 1 of 4) 6022 NM_001172677 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 489-42 chr11 70765872 70766103 + 3 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -96803 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 632-19 chr12 16020714 16021006 + 3 NA intron (NM_015954, intron 6 of 8) MSTB-int|LTR|ERVL-MaLR 109528 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 770-44 chr2 187329781 187330138 + 3 NA Intergenic L1PA16|LINE|L1 118293 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 439-300 chr9 14484291 14484561 + 3 NA intron (NM_001369458, intron 1 of 11) L4_A_Mam|LINE|RTE-X 47651 NM_001369468 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 553-106 chr2 31708933 31709264 + 3 NA Intergenic Intergenic 94882 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 500-10 chr1 169760502 169760717 + 3 NA Intergenic L1MC1|LINE|L1 -26530 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 811-22 chr19 28991660 28992127 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -10662 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 1058-14 chr20 45399603 45400171 + 3 NA intron (NR_003189, intron 3 of 5) THE1C-int|LTR|ERVL-MaLR -6106 NM_001197139 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 736-10 chr10 27808640 27809165 + 3 NA Intergenic Intergenic -63083 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 584-25 chr11 14193635 14194042 + 3 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 164647 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 515-217 chr5 117631738 117631959 + 3 NA Intergenic L1MA5|LINE|L1 -98513 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 503-256 chr7 24033055 24033453 + 3 NA Intergenic L1PREC2|LINE|L1 -250936 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 195-64 chr14 56271455 56271571 + 3 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 153102 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 564-209 chr8 141309399 141309610 + 3 NA Intergenic L1ME3A|LINE|L1 -31045 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 348-312 chr3 103716165 103716287 + 3 NA Intergenic L1MA9|LINE|L1 -192110 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 452-224 chr5 166304906 166305135 + 3 NA Intergenic LTR8B|LTR|ERV1 621350 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 636-113 chr5 95147732 95148190 + 3 NA intron (NM_024717, intron 1 of 22) L1PA16|LINE|L1 -66095 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 358-246 chr2 209954487 209954666 + 3 NA intron (NM_032504, intron 47 of 63) intron (NM_032504, intron 47 of 63) -47989 NM_006916 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 1276-7 chr9 118729466 118730260 + 3 NA intron (NR_151725, intron 2 of 3) intron (NR_151725, intron 2 of 3) 50192 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 337-450 chr5 67041517 67041664 + 3 NA intron (NM_001297651, intron 1 of 25) MIRb|SINE|MIR 36935 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 505-226 chr4 129059999 129060287 + 3 NA intron (NM_001300898, intron 2 of 5) L1M2a|LINE|L1 33396 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 493-191 chr3 2203774 2204088 + 3 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -34898 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 281-344 chr5 7778970 7779098 + 3 NA intron (NM_020546, intron 18 of 24) intron (NM_020546, intron 18 of 24) 72099 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 456-322 chr8 114560794 114561073 + 3 NA Intergenic Intergenic 1107080 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 751-88 chrX 89115596 89115990 + 3 NA Intergenic MIR3|SINE|MIR 368568 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 693-64 chr20 55230168 55230468 + 3 NA Intergenic Intergenic -192725 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 366-390 chr6 150728116 150728342 + 3 NA intron (NM_001329803, intron 1 of 13) intron (NM_001329803, intron 1 of 13) 7130 NM_001329801 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 884-25 chr21 14619019 14619475 + 3 NA intron (NM_001256579, intron 1 of 6) intron (NM_001256579, intron 1 of 6) 23860 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 391-324 chr7 11746711 11746872 + 3 NA intron (NM_015204, intron 1 of 26) L1MD3|LINE|L1 85407 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 463-242 chr5 130330552 130330847 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 426234 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 992-13 chr3 27068670 27069089 + 3 NA Intergenic Intergenic 147644 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 432-263 chr7 13782883 13783181 + 3 NA Intergenic Intergenic 203482 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 458-35 chr11 50451709 50451942 + 3 NA Intergenic ALR/Alpha|Satellite|centr 42678 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 775-67 chr5 67644495 67644898 + 3 NA intron (NR_147169, intron 1 of 2) MLT1A|LTR|ERVL-MaLR 2093 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 376-369 chr7 35370123 35370322 + 3 NA intron (NR_038864, intron 2 of 2) intron (NR_038864, intron 2 of 2) 56367 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 392-22 chr10 24026124 24026403 + 3 NA intron (NM_001098500, intron 2 of 18) L1ME1|LINE|L1 -182528 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 338-45 chr10 11389562 11389738 + 3 NA Intergenic Intergenic -44976 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 683-57 chr3 189521713 189522097 + 3 NA Intergenic L1M2a1|LINE|L1 -74841 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 707-63 chr20 31345696 31346097 + 3 NA Intergenic Intergenic -22705 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 586-29 chr11 38125159 38125532 + 3 NA Intergenic Intergenic 186744 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 430-151 chr2 130955530 130955711 + 3 NA intron (NM_001367493, intron 4 of 13) L1M4b|LINE|L1 118706 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 751-65 chr5 155179415 155179711 + 3 NA Intergenic L1MCc|LINE|L1 165808 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 272-17 chr1 168401674 168401847 + 3 NA non-coding (NR_037851, exon 4 of 4) non-coding (NR_037851, exon 4 of 4) 20896 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 647-79 chr5 18549032 18549346 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 741915 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 365-51 chr10 66355887 66356207 + 3 NA intron (NM_001127384, intron 12 of 17) L1MD|LINE|L1 -569989 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 727-5 chr1 214690782 214691170 + 3 NA Intergenic Intergenic 87781 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 204-247 chr6 36706085 36706173 + 3 NA intron (NM_001257357, intron 2 of 13) AluJr4|SINE|Alu 8303 NM_001257357 401258 Hs.485258 NM_207498 ENSG00000255587 RAB44 RASD3|RASL13|dJ431A14.3 RAB44, member RAS oncogene family protein-coding 497-150 chr20 14998934 14999168 + 3 NA intron (NM_001351663, intron 5 of 17) L1M1|LINE|L1 -69533 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 268-233 chr3 4587694 4587829 + 3 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 94413 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 617-20 chr11 80060476 80060692 + 3 NA Intergenic Intergenic -619554 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 486-202 chr3 70082154 70082418 + 3 NA Intergenic Intergenic 82542 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 947-2 chr10 66301370 66302016 + 3 NA intron (NM_001127384, intron 12 of 17) L1MEd|LINE|L1 -624343 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 275-309 chr6 48375536 48375723 + 3 NA Intergenic L1MEg|LINE|L1 -306940 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 486-100 chr15 72876896 72877150 + 3 NA Intergenic L1ME1|LINE|L1 -93265 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 414-329 chr8 88903540 88903708 + 3 NA Intergenic L1MA1|LINE|L1 -576141 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 438-142 chr20 4495392 4495570 + 3 NA Intergenic Intergenic -190975 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 493-319 chrX 47915461 47915718 + 3 NA exon (NM_007137, exon 5 of 5) exon (NM_007137, exon 5 of 5) 78687 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 231-208 chr22 35184005 35184096 + 3 NA intron (NR_126356, intron 2 of 5) L1MEf|LINE|L1 47006 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 371-52 chr10 76824439 76824597 + 3 NA Intergenic Intergenic -63526 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 388-239 chr3 169408472 169408612 + 3 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) -39325 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 788-33 chr3 21030900 21031269 + 3 NA Intergenic LTR85b|LTR|Gypsy? -374642 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 361-207 chr2 31604210 31604370 + 3 NA Intergenic L1MA2|LINE|L1 -23352 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 455-69 chr14 29774869 29775142 + 3 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 152091 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 472-236 chr4 136882603 136882893 + 3 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -311008 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 1149-6 chr20 24510611 24511246 + 3 NA intron (NM_001323606, intron 2 of 4) L1MEd|LINE|L1 40967 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 838-2 chr1 95756329 95756891 + 3 NA Intergenic L1M4c|LINE|L1 -235458 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 537-274 chr9 75537393 75537648 + 3 NA Intergenic L1PA15|LINE|L1 -353124 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 538-109 chr2 67725382 67725569 + 3 NA Intergenic Intergenic 100087 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 449-17 chr1 213024750 213024928 + 3 NA Intergenic L1ME3E|LINE|L1 -8964 NM_001300753 90806 Hs.157078 NM_144567 ENSG00000174606 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 protein-coding 315-514 chr9 95437858 95438012 + 3 NA Intergenic Intergenic -25674 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 710-33 chr15 100553123 100553526 + 3 NA non-coding (NR_073405, exon 1 of 1) non-coding (NR_073405, exon 1 of 1) -5342 NR_135693 102723335 Hs.587819 NR_135693 ENSG00000259540 LOC102723335 - uncharacterized LOC102723335 ncRNA 354-128 chr14 36908528 36908710 + 3 NA intron (NM_001171170, intron 1 of 10) MER3|DNA|hAT-Charlie 43772 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 248-317 chr5 87247868 87247966 + 3 NA non-coding (NR_105018, exon 4 of 4) non-coding (NR_105018, exon 4 of 4) -8716 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 672-108 chr8 14068735 14069115 + 3 NA Intergenic L1M3c|LINE|L1 439235 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 513-55 chr12 7738138 7738483 + 3 NA intron (NM_001371391, intron 3 of 5) MIRb|SINE|MIR 9065 NM_001371390 517-300 chrX 67088105 67088408 + 3 NA Intergenic L1MA4A|LINE|L1 -448958 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 613-70 chr20 2356477 2356699 + 3 NA Intergenic Intergenic -24313 NM_001254734 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 586-45 chr13 49138622 49138971 + 3 NA exon (NM_014923, exon 5 of 24) exon (NM_014923, exon 5 of 24) 28479 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 810-61 chrX 97516465 97516912 + 3 NA intron (NM_006729, intron 26 of 26) intron (NM_006729, intron 26 of 26) 47847 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 902-32 chr5 171604015 171604493 + 3 NA Intergenic L1ME3F|LINE|L1 -181618 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 330-458 chr6 49963795 49963990 + 3 NA intron (NM_001037499, intron 1 of 1) MIRc|SINE|MIR 272 NM_001037499 245928 Hs.381372 NM_001037499 ENSG00000177684 DEFB114 DEFB-14|DEFB14 defensin beta 114 protein-coding 459-219 chr4 94156668 94156927 + 3 NA intron (NR_125922, intron 5 of 8) HERVL-int|LTR|ERVL 50759 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 471-53 chr11 92808472 92808735 + 3 NA intron (NM_001008781, intron 11 of 24) intron (NM_001008781, intron 11 of 24) 107025 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 453-158 chr3 41458414 41458638 + 3 NA intron (NR_136342, intron 31 of 34) intron (NR_136342, intron 31 of 34) 259021 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 775-89 chr9 96745089 96745629 + 3 NA Intergenic AluJb|SINE|Alu 19538 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 407-111 chr17 55689087 55689297 + 3 NA Intergenic L2a|LINE|L2 33672 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 361-255 chr20 45264297 45264580 + 3 NA Intergenic Intergenic -9874 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 526-187 chr4 118160455 118160704 + 3 NA intron (NM_004784, intron 6 of 13) L1PREC2|LINE|L1 -118183 NR_034011 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 524-114 chr2 95290154 95290391 + 3 NA 3' UTR (NM_001165978, exon 24 of 24) 3' UTR (NM_001165978, exon 24 of 24) -7075 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 251-424 chr9 108833069 108833266 + 3 NA Intergenic LTR85a|LTR|Gypsy? 22819 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 460-294 chr8 117467014 117467227 + 3 NA Intergenic L2|LINE|L2 -53593 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 459-43 chr10 119858452 119858622 + 3 NA intron (NM_024834, intron 4 of 15) intron (NM_024834, intron 4 of 15) 14346 NM_024834 79892 Hs.124246 NM_024834 ENSG00000197771 MCMBP C10orf119|MCM-BP minichromosome maintenance complex binding protein protein-coding 564-46 chr13 37180949 37181137 + 3 NA Intergenic MIRb|SINE|MIR -75379 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 377-313 chr5 25526942 25527097 + 3 NA Intergenic L2|LINE|L2 336066 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 484-121 chr2 35697080 35697423 + 3 NA Intergenic L1MC5|LINE|L1 225846 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 288-356 chr6 19965157 19965276 + 3 NA Intergenic Intergenic 127846 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 579-185 chrX 64932480 64932809 + 3 NA intron (NM_001178032, intron 1 of 4) L1PBa|LINE|L1 43806 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 473-197 chr4 96379625 96379833 + 3 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 69026 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 437-271 chr8 77729502 77729699 + 3 NA Intergenic Intergenic 278903 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 499-43 chr11 55399544 55399740 + 3 NA Intergenic Intergenic 31758 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 394-283 chr6 11085276 11085447 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -8473 NM_001135575 221710 Hs.656600 NM_001135575 ENSG00000224531 SMIM13 C6orf228 small integral membrane protein 13 protein-coding 746-73 chr7 79642133 79642579 + 3 NA Intergenic L1M8|LINE|L1 188396 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 324-85 chr11 42270177 42270400 + 3 NA Intergenic L1ME2z|LINE|L1 -16598 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 333-331 chr22 29922531 29922772 + 3 NA intron (NM_153051, intron 1 of 18) L1M3|LINE|L1 39477 NM_153051 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 431-58 chr11 82446415 82446643 + 3 NA Intergenic Intergenic -42616 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 536-202 chr6 104172055 104172400 + 3 NA Intergenic Intergenic 687319 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 433-170 chr3 67332650 67332823 + 3 NA Intergenic L2c|LINE|L2 107272 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 433-193 chr4 32506559 32506799 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 155641 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 555-10 chr1 238860621 238860902 + 3 NA Intergenic Intergenic -374744 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 477-74 chr12 21567979 21568321 + 3 NA intron (NM_021957, intron 5 of 15) MLT1O|LTR|ERVL-MaLR 36697 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 759-72 chr8 87283948 87284407 + 3 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 417762 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1130-6 chr5 46057118 46057540 + 3 NA Intergenic ALR/Alpha|Satellite|centr -360949 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 626-84 chr21 29738713 29739116 + 3 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -9261 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 524-144 chr22 49787794 49788157 + 3 NA intron (NM_001349942, intron 7 of 12) intron (NM_001349942, intron 7 of 12) 36356 NM_001349941 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 527-173 chr3 65692985 65693174 + 3 NA intron (NM_001365904, intron 1 of 24) AluJr|SINE|Alu -200737 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 318-442 chr5 55243841 55244064 + 3 NA Intergenic U2|snRNA|snRNA -10235 NR_125347 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 606-156 chr8 49804952 49805498 + 3 NA Intergenic Intergenic -104571 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 406-179 chr22 49066037 49066203 + 3 NA Intergenic MER30|DNA|hAT-Charlie 199350 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 394-25 chr1 201158599 201158772 + 3 NA intron (NM_001288564, intron 1 of 5) intron (NM_001288564, intron 1 of 5) -4130 NM_001288566 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 469-157 chr20 42825316 42825517 + 3 NA intron (NM_133170, intron 2 of 31) L1ME4a|LINE|L1 139933 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 748-37 chr15 100237977 100238521 + 3 NA intron (NM_139057, intron 7 of 21) L2a|LINE|L2 103726 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 536-50 chr11 81070631 81070859 + 3 NA Intergenic AluSg7|SINE|Alu -307942 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 514-296 chr9 79637002 79637266 + 3 NA intron (NM_001351547, intron 5 of 18) intron (NM_001351547, intron 5 of 18) 63957 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 354-362 chr5 20195651 20195834 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -109809 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 383-248 chr3 56515666 56515853 + 3 NA Intergenic Intergenic -41397 NR_148375 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 171-117 chr7 5079059 5079129 + 3 NA Intergenic AluSz|SINE|Alu 7034 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 446-301 chr8 75179307 75179499 + 3 NA Intergenic L1PA16|LINE|L1 99078 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 481-20 chr10 15851880 15852196 + 3 NA intron (NM_024948, intron 1 of 14) L2c|LINE|L2 8469 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 220-156 chr2 41817768 41817861 + 3 NA Intergenic L1MD1|LINE|L1 -59741 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 459-243 chr5 114288687 114288950 + 3 NA Intergenic L1MB5|LINE|L1 -73252 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 812-48 chr7 53617957 53618344 + 3 NA Intergenic Intergenic 193781 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1182-14 chr5 131846802 131847567 + 3 NA intron (NM_001303622, intron 11 of 12) L1MB7|LINE|L1 -50167 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 561-131 chr3 74006600 74006826 + 3 NA Intergenic Intergenic 197469 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 240-323 chr4 83620702 83620788 + 3 NA Intergenic L1MC4|LINE|L1 84637 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 520-59 chr11 115103448 115103660 + 3 NA Intergenic MIRb|SINE|MIR -230023 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 435-7 chr1 58938088 58938347 + 3 NA Intergenic Intergenic -82259 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 669-92 chr5 114347151 114347516 + 3 NA Intergenic L1MC4a|LINE|L1 -14737 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 721-21 chr17 33361628 33361991 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -68821 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 486-241 chr5 45115600 45115860 + 3 NA Intergenic Intergenic 306783 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 472-80 chr14 33448112 33448357 + 3 NA intron (NM_001165893, intron 3 of 10) L2c|LINE|L2 -260703 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 464-61 chr14 53138765 53138972 + 3 NA intron (NM_030637, intron 1 of 11) L1MCc|LINE|L1 14455 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 283-301 chr3 150782036 150782255 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -18976 NM_005067 6478 Hs.477959 NM_005067 ENSG00000181788 SIAH2 hSiah2 siah E3 ubiquitin protein ligase 2 protein-coding 272-157 chr18 3846852 3847011 + 3 NA intron (NM_001242761, intron 4 of 11) L1MB7|LINE|L1 -1573 NM_001242765 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 306-293 chr22 28655295 28655514 + 3 NA intron (NM_001145418, intron 1 of 22) L3|LINE|CR1 24461 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 245-133 chr14 81878556 81878719 + 3 NA Intergenic MER34A1|LTR|ERV1 -135499 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 172-28 chr12 13153975 13154050 + 3 NA Intergenic Intergenic -42714 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 270-75 chr12 19757721 19757860 + 3 NA Intergenic Intergenic -256895 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 402-345 chr8 108099490 108099811 + 3 NA Intergenic L1MEg|LINE|L1 -16030 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 449-249 chr7 5251688 5251860 + 3 NA Intergenic AluSx|SINE|Alu -31169 NM_001040661 222962 Hs.4302 NM_153247 ENSG00000164638 SLC29A4 ENT4|PMAT solute carrier family 29 member 4 protein-coding 432-228 chr5 108375769 108375979 + 3 NA intron (NM_001163315, intron 1 of 8) L1M4|LINE|L1 6224 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 461-89 chr15 95487334 95487526 + 3 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 54337 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 163-75 chr21 29418565 29418687 + 3 NA Intergenic Intergenic 46125 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 518-323 chrX 85401552 85401783 + 3 NA Intergenic L1MA1|LINE|L1 -22002 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 320-266 chr2 96316056 96316186 + 3 NA Intergenic Intergenic -9203 NM_001008949 150771 Hs.65009 NM_178495 ENSG00000198885 ITPRIPL1 KIAA1754L ITPRIP like 1 protein-coding 404-163 chr2 70099094 70099384 + 3 NA Intergenic AluJb|SINE|Alu 11762 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding 495-205 chr5 121007081 121007267 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -315376 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 378-231 chr2 79426596 79426765 + 3 NA Intergenic Intergenic 74164 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 443-126 chr18 7701479 7701766 + 3 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 134306 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 367-169 chr17 65803936 65804225 + 3 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 22371 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 576-77 chr2 8016432 8016791 + 3 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -39797 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 674-66 chr4 64445052 64445406 + 3 NA Intergenic MER4B-int|LTR|ERV1 -35769 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 791-10 chr10 78142905 78143215 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -105565 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 413-74 chr12 115412962 115413192 + 3 NA Intergenic Intergenic -728902 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 465-166 chr22 34767223 34767504 + 3 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 230553 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 376-24 chr1 194504873 194505111 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 1200247 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 750-66 chr8 24806868 24807317 + 3 NA Intergenic Intergenic -106669 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 521-195 chr5 66098343 66098657 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -45800 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 1129-11 chr2 183959736 183960439 + 3 NA Intergenic AluJo|SINE|Alu -418888 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 1124-3 chr2 118962672 118963161 + 3 NA intron (NM_006770, intron 1 of 16) L1MD1|LINE|L1 20747 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 608-131 chr6 53601921 53602275 + 3 NA Intergenic MER20|DNA|hAT-Charlie -26282 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 555-180 chr6 141005176 141005398 + 3 NA Intergenic Intergenic 321473 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 614-145 chr9 31658749 31659134 + 3 NA Intergenic L1PA11|LINE|L1 -277451 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 514-18 chr1 235039712 235039961 + 3 NA Intergenic Intergenic 29982 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 468-31 chr10 54597476 54597848 + 3 NA intron (NR_134503, intron 2 of 5) L1PA16|LINE|L1 10295 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 587-130 chr5 20306431 20306769 + 3 NA intron (NR_146519, intron 1 of 1) intron (NR_146519, intron 1 of 1) 1049 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 630-74 chr20 43335636 43335861 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -122148 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 391-291 chr5 115928115 115928323 + 3 NA Intergenic Intergenic -28352 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 535-241 chr8 83318042 83318426 + 3 NA Intergenic LOR1a|LTR|ERV1 -85524 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 670-101 chr6 40133241 40133603 + 3 NA Intergenic Intergenic -198960 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 569-35 chr10 132259770 132259962 + 3 NA intron (NM_001318878, intron 1 of 11) intron (NM_001318878, intron 1 of 11) -10758 NR_134911 282974 Hs.469002 NM_173575 ENSG00000165752 STK32C PKE|YANK3 serine/threonine kinase 32C protein-coding 519-254 chr9 91296905 91297121 + 3 NA intron (NM_001698, intron 5 of 9) intron (NM_001698, intron 5 of 9) 64911 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 318-160 chr13 65680882 65681094 + 3 NA Intergenic Intergenic -185059 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 594-162 chr9 32087002 32087429 + 3 NA Intergenic Intergenic -297388 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 426-26 chr10 60458041 60458256 + 3 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -68273 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 807-17 chr14 85335194 85335725 + 3 NA Intergenic MER20|DNA|hAT-Charlie -51816 NR_135155 105370605 NR_135155 ENSG00000258814 LINC02329 - long intergenic non-protein coding RNA 2329 ncRNA 490-145 chr2 76662773 76662990 + 3 NA Intergenic Intergenic -323084 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 392-46 chr11 114710671 114710916 + 3 NA Intergenic L1MB2|LINE|L1 32266 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 549-104 chr2 33759343 33759557 + 3 NA intron (NR_126403, intron 1 of 5) MER66B|LTR|ERV1 -31233 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 269-400 chr8 72370028 72370141 + 3 NA Intergenic Intergenic -118450 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 597-69 chr2 77326939 77327369 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 195222 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 653-109 chr7 40818046 40818578 + 3 NA intron (NM_024728, intron 14 of 14) MLT1M|LTR|ERVL-MaLR 161627 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 643-25 chr12 40524708 40525126 + 3 NA intron (NM_173600, intron 105 of 173) intron (NM_173600, intron 105 of 173) 131523 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 421-62 chr13 36020214 36020434 + 3 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 111058 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 493-73 chr13 104059972 104060338 + 3 NA Intergenic L1M4|LINE|L1 634955 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 1124-4 chr20 43413623 43414108 + 3 NA Intergenic L1P4|LINE|L1 -44031 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 582-121 chr5 72936885 72937244 + 3 NA Intergenic Intergenic -18977 NM_001146032 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 664-40 chr14 75398640 75399019 + 3 NA Intergenic Intergenic -28895 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 505-84 chr14 58932553 58932745 + 3 NA intron (NR_110547, intron 3 of 5) L1M2a|LINE|L1 104361 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 329-308 chr2 210857076 210857328 + 3 NA Intergenic L1ME3C|LINE|L1 239631 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 888-15 chr17 5903154 5903612 + 3 NA intron (NR_040000, intron 3 of 3) L2b|LINE|L2 131149 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 419-112 chr17 33309805 33310007 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -16918 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 666-73 chr22 33229575 33229908 + 3 NA Intergenic L1MEd|LINE|L1 121212 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 331-7 chr1 79982704 79982935 + 3 NA Intergenic Intergenic -552936 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 903-23 chr3 36917723 36918132 + 3 NA intron (NM_001329998, intron 1 of 23) MER106B|DNA|hAT-Charlie 27127 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 480-275 chr7 54184470 54184735 + 3 NA Intergenic Intergenic -146095 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 431-52 chr11 28654461 28654660 + 3 NA Intergenic Intergenic -177012 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 830-56 chr8 123307663 123308072 + 3 NA Intergenic L1MB3|LINE|L1 -32326 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 366-330 chr4 161177031 161177238 + 3 NA Intergenic Intergenic -845599 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 386-285 chr5 33169045 33169288 + 3 NA Intergenic L1ME2z|LINE|L1 -60569 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 495-204 chr5 106191945 106192155 + 3 NA Intergenic Intergenic 818964 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 552-218 chr8 131056370 131056789 + 3 NA Intergenic L2a|LINE|L2 -15670 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 694-83 chr3 25989978 25990447 + 3 NA Intergenic Intergenic -116517 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 387-116 chr15 47419254 47419507 + 3 NA intron (NM_001198999, intron 2 of 19) L2a|LINE|L2 235291 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 501-260 chr8 84357219 84357389 + 3 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -58180 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 470-217 chr5 89939453 89939673 + 3 NA Intergenic MIRc|SINE|MIR 77157 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 571-28 chr11 54858643 54859005 + 3 NA Intergenic ALR/Alpha|Satellite|centr 151992 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 831-43 chr6 87990062 87990530 + 3 NA Intergenic L1MA7|LINE|L1 -57545 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 525-138 chr20 14412162 14412390 + 3 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -74609 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 748-20 chr11 59297972 59298476 + 3 NA Intergenic Intergenic -66235 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 639-19 chr11 5640381 5640716 + 3 NA intron (NM_001003819, intron 10 of 13) L1M4|LINE|L1 8293 NM_130390 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 407-328 chr8 124877347 124877545 + 3 NA Intergenic Intergenic -55388 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 389-19 chr1 216813846 216814066 + 3 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -8571 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 542-149 chr4 59715889 59716217 + 3 NA Intergenic Intergenic 702480 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 753-67 chrX 115077988 115078423 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 48237 NR_145764 109617004 NR_145764 ENSG00000271907 SNORA35B - small nucleolar RNA, H/ACA box 35B snoRNA 388-172 chr2 165779321 165779598 + 3 NA intron (NM_004482, intron 1 of 10) intron (NM_004482, intron 1 of 10) 14788 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 814-42 chr3 147488403 147488742 + 3 NA intron (NR_121655, intron 1 of 2) intron (NR_121655, intron 1 of 2) 67245 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 495-133 chr20 23894520 23894767 + 3 NA Intergenic L1PB1|LINE|L1 -14895 NM_001900 1473 Hs.121489 NM_001900 ENSG00000170367 CST5 - cystatin D protein-coding 339-482 chr5 178884328 178884520 + 3 NA 3' UTR (NM_058230, exon 5 of 5) 3' UTR (NM_058230, exon 5 of 5) -11489 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 1419 chr1 246997750 246998515 + 3 NA intron (NR_037892, intron 3 of 5) L1MA9|LINE|L1 9925 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 439-306 chr9 74243235 74243512 + 3 NA Intergenic L1MA9|LINE|L1 -128158 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 1003-7 chr12 21048762 21049415 + 3 NA intron (NM_001009562, intron 8 of 12) intron (NM_001009562, intron 8 of 12) 33392 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 306-48 chr10 16200813 16200983 + 3 NA Intergenic Intergenic -236045 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 302-406 chr7 24316105 24316277 + 3 NA Intergenic Intergenic 32001 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 449-12 chr1 170498611 170498851 + 3 NA intron (NR_125958, intron 1 of 2) MIR3|SINE|MIR -33391 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 202-211 chr5 92710431 92710499 + 3 NA Intergenic Intergenic 860878 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 404-296 chr7 96906559 96906793 + 3 NA Intergenic Intergenic -98877 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 444-55 chr12 63266559 63266726 + 3 NA Intergenic L1M3d|LINE|L1 -113832 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 451-38 chr11 89514504 89514665 + 3 NA intron (NM_001143837, intron 2 of 20) L1M4|LINE|L1 -22365 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 988-14 chr2 7532062 7532653 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 111096 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 941-2 chr1 222255502 222256099 + 3 NA Intergenic Charlie10|DNA|hAT-Charlie -277280 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 429-262 chr6 138755319 138755537 + 3 NA intron (NR_161203, intron 2 of 3) intron (NR_161203, intron 2 of 3) -18092 NM_015439 25901 Hs.412019 NM_015439 ENSG00000024862 CCDC28A C6orf80|CCRL1AP coiled-coil domain containing 28A protein-coding 583-54 chr13 106321276 106321640 + 3 NA Intergenic Intergenic -55106 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 421-323 chr9 110180796 110181013 + 3 NA Intergenic LTR8B|LTR|ERV1 27229 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 784-3 chr1 50267516 50267864 + 3 NA Intergenic MIRb|SINE|MIR 155753 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 464-243 chr7 47994432 47994697 + 3 NA intron (NM_001030019, intron 7 of 9) intron (NM_001030019, intron 7 of 9) -14949 NR_037917 3364 Hs.152983 NM_004507 ENSG00000136273 HUS1 hHUS1 HUS1 checkpoint clamp component protein-coding 655-55 chr2 60078894 60079198 + 3 NA Intergenic Intergenic 303990 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 622-8 chr10 67214826 67215069 + 3 NA intron (NM_001127384, intron 6 of 17) L1ME3D|LINE|L1 188463 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 610-17 chr10 25356291 25356615 + 3 NA intron (NM_020752, intron 2 of 10) THE1B|LTR|ERVL-MaLR -180177 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 139-48 chr20 12041063 12041147 + 3 NA Intergenic Intergenic 123212 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 479-149 chr3 194532332 194532631 + 3 NA Intergenic L1ME1|LINE|L1 45341 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 913-33 chr5 125670097 125670736 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie 177155 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 641-97 chr6 137107412 137107756 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -62404 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 412-60 chr11 133796129 133796378 + 3 NA intron (NR_120444, intron 2 of 2) intron (NR_120444, intron 2 of 2) 14123 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 482-104 chr18 2122425 2122707 + 3 NA Intergenic Intergenic 448939 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 534-13 chr1 180649658 180649943 + 3 NA intron (NR_137330, intron 1 of 12) HAL1|LINE|L1 17778 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 659-43 chr17 78152656 78153121 + 3 NA intron (NM_001163075, intron 2 of 4) AluSz|SINE|Alu 6503 NM_001163075 100141515 Hs.633034 NM_001163075 ENSG00000187997 C17orf99 IL-40|UNQ464 chromosome 17 open reading frame 99 protein-coding 490-205 chr4 77809092 77809308 + 3 NA intron (NM_001365006, intron 1 of 11) MIR|SINE|MIR 9864 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 432-173 chr3 68577483 68577712 + 3 NA Intergenic Intergenic 76960 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 425-329 chrX 74183517 74183755 + 3 NA intron (NR_028379, intron 5 of 6) L1MA6|LINE|L1 34825 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 870-25 chr4 43375940 43376380 + 3 NA Intergenic L1P3|LINE|L1 116383 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 501-64 chr14 40117870 40118175 + 3 NA Intergenic L1PBa|LINE|L1 -685522 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 673-110 chr7 77210178 77210493 + 3 NA intron (NM_020879, intron 2 of 18) MSTA-int|LTR|ERVL-MaLR -10516 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 208-194 chr4 115675208 115675280 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -561624 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 394-154 chr2 18609330 18609521 + 3 NA Intergenic Intergenic -19845 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 526-156 chr21 25697045 25697285 + 3 NA intron (NR_072999, intron 4 of 9) MLT1E3|LTR|ERVL-MaLR -37807 NM_001197297 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 461-232 chr6 62688098 62688303 + 3 NA Intergenic Intergenic -401973 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 615-17 chr11 40299795 40300054 + 3 NA intron (NM_001258419, intron 4 of 6) MSTA|LTR|ERVL-MaLR -6794 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 833-40 chr8 139563654 139564187 + 3 NA Intergenic Intergenic 139203 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 581-171 chr8 82028820 82029066 + 3 NA Intergenic L2a|LINE|L2 -186657 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 767-35 chr3 83558014 83558406 + 3 NA Intergenic L1MCb|LINE|L1 1311365 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 387-132 chr16 54496201 54496430 + 3 NA Intergenic MER113|DNA|hAT-Charlie -125616 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 551-216 chr8 94753142 94753364 + 3 NA intron (NM_181787, intron 6 of 18) intron (NM_181787, intron 6 of 18) 33353 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 649-80 chr4 30337126 30337469 + 3 NA Intergenic Intergenic -383072 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 800-9 chr10 16277071 16277543 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -159636 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 1146-7 chr16 68566027 68566631 + 3 NA non-coding (NR_130978, exon 5 of 5) non-coding (NR_130978, exon 5 of 5) 27038 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 207-313 chr9 72561457 72561567 + 3 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 39711 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 489 chr1 20017605 20017870 + 3 NA Intergenic L1M1|LINE|L1 -37303 NM_001161727 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 800-21 chr14 84330588 84331121 + 3 NA Intergenic LTR82A|LTR|ERVL -941078 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 292-70 chr11 23490732 23490941 + 3 NA Intergenic MER4D1|LTR|ERV1 -71646 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 817-8 chr1 237222894 237223320 + 3 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 180923 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 1196-8 chr5 107174813 107175389 + 3 NA Intergenic Intergenic -164087 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 964-25 chr5 15741031 15741614 + 3 NA intron (NM_001278317, intron 2 of 3) L3|LINE|CR1 -126320 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 429-72 chr12 125309336 125309554 + 3 NA intron (NM_001366854, intron 1 of 8) intron (NM_001366854, intron 1 of 8) -17171 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 407-113 chr17 56752356 56752591 + 3 NA Intergenic MIR|SINE|MIR 81447 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 726-20 chr12 80586558 80586927 + 3 NA intron (NM_001145026, intron 25 of 44) MER2|DNA|TcMar-Tigger -120892 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 429-52 chr11 50468860 50469056 + 3 NA Intergenic ALR/Alpha|Satellite|centr 59811 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 379-228 chr3 186366615 186366787 + 3 NA Intergenic Intergenic -4467 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 355-188 chr16 78324805 78324964 + 3 NA intron (NM_001291997, intron 4 of 7) L1MB8|LINE|L1 225230 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 585-13 chr10 32533496 32533845 + 3 NA intron (NR_109826, intron 11 of 16) L1M3f|LINE|L1 87530 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 569-129 chr4 11374105 11374459 + 3 NA Intergenic Intergenic 5455 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 386-378 chr9 76969399 76969605 + 3 NA Intergenic Intergenic -50153 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 776-50 chr6 28186690 28187101 + 3 NA Intergenic L1M7|LINE|L1 25134 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 793-13 chr12 114979792 114980240 + 3 NA Intergenic L2a|LINE|L2 -295841 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 520-43 chr10 122527488 122527794 + 3 NA Intergenic L1ME3Cz|LINE|L1 -33024 NM_004406 1755 Hs.279611 NM_004406 ENSG00000187908 DMBT1 GP340|SAG|SALSA|muclin deleted in malignant brain tumors 1 protein-coding 594-68 chr2 51057640 51058062 + 3 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 25250 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 552-63 chr14 72022750 72022988 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 89342 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 308-534 chr9 31178948 31179109 + 3 NA Intergenic Intergenic 202462 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 569-184 chr8 140481230 140481468 + 3 NA Intergenic AluY|SINE|Alu -22770 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 434-11 chr1 101885876 101886065 + 3 NA intron (NR_033424, intron 1 of 1) intron (NR_033424, intron 1 of 1) 13958 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 1036-9 chr14 54466479 54467160 + 3 NA Intergenic LTR78B|LTR|ERV1 22161 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 346-198 chr17 71231733 71231889 + 3 NA Intergenic L1MA7|LINE|L1 -29632 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 573-153 chr5 119588193 119588438 + 3 NA Intergenic Intergenic -41243 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 553-89 chr18 4185968 4186283 + 3 NA intron (NM_001242761, intron 1 of 11) L1PREC2|LINE|L1 -78477 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 517-256 chr8 5532306 5532654 + 3 NA Intergenic Intergenic -537566 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 601-16 chr10 75553223 75553618 + 3 NA TTS (NR_030337) TTS (NR_030337) 962 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 529-156 chr4 43647253 43647558 + 3 NA Intergenic Intergenic -154862 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 512-152 chr21 22506079 22506261 + 3 NA Intergenic Intergenic 407553 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 559-108 chr20 52347127 52347478 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -155317 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 597-11 chr1 184836094 184836483 + 3 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) -81430 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 769-69 chr8 118926905 118927262 + 3 NA intron (NM_002546, intron 3 of 4) intron (NM_002546, intron 3 of 4) 24802 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 601-155 chr9 77025946 77026210 + 3 NA Intergenic Intergenic 6423 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 408-343 chr8 120672690 120672907 + 3 NA intron (NM_021021, intron 2 of 6) LTR33A_|LTR|ERVL -88455 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 292-51 chr10 82076874 82077042 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 155962 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 480-150 chr2 81829249 81829440 + 3 NA Intergenic L1MA7|LINE|L1 -362398 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 545-113 chr2 98244408 98244833 + 3 NA intron (NM_001345864, intron 13 of 21) (TTTA)n|Simple_repeat|Simple_repeat 95087 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 622-22 chr12 22779772 22780165 + 3 NA Intergenic Intergenic 154797 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 480-263 chr6 155926856 155927224 + 3 NA Intergenic L1MB8|LINE|L1 -19757 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 770-7 chr11 37933678 37933995 + 3 NA Intergenic Intergenic -4765 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 647-46 chr2 37466196 37466590 + 3 NA Intergenic L1ME2|LINE|L1 121763 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 459-108 chr17 57312232 57312418 + 3 NA intron (NM_001322250, intron 5 of 13) (TTCC)n|Simple_repeat|Simple_repeat 55306 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 516-212 chr5 136468229 136468450 + 3 NA Intergenic L2a|LINE|L2 -102863 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 580-35 chr12 13584475 13584875 + 3 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -207930 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 437-184 chr4 431815 432000 + 3 NA intron (NR_002451, intron 2 of 2) intron (NR_002451, intron 2 of 2) 42302 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 367-249 chr20 39560411 39560575 + 3 NA Intergenic Intergenic -335745 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 474-120 chr19 13359409 13359607 + 3 NA intron (NM_023035, intron 6 of 46) intron (NM_023035, intron 6 of 46) 146952 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 1214-8 chr6 145289225 145289725 + 3 NA Intergenic L1MEg|LINE|L1 397402 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 534-192 chr5 20641459 20641826 + 3 NA intron (NR_149120, intron 1 of 11) intron (NR_149120, intron 1 of 11) -26107 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 462-19 chr10 4526148 4526317 + 3 NA Intergenic Intergenic 119763 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 298-430 chr7 42658716 42658874 + 3 NA Intergenic L1ME1|LINE|L1 47652 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 586-20 chr10 51150788 51151081 + 3 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 76447 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 550-81 chr15 62161576 62161853 + 3 NA Intergenic L1MA6|LINE|L1 3571 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 342-539 chr8 132771379 132771594 + 3 NA Intergenic Intergenic -3872 NM_001362971 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 745-14 chr14 71869741 71870187 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -62207 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 672-64 chr20 22234213 22234550 + 3 NA Intergenic Intergenic 48420 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 372-209 chr19 36784125 36784354 + 3 NA Intergenic Intergenic 11121 NM_001294306 728485 Hs.157101 NM_001294306 LOC728485 - uncharacterized LOC728485 protein-coding 568-2 chr1 84206949 84207194 + 3 NA intron (NM_182948, intron 8 of 9) intron (NM_182948, intron 8 of 9) 25439 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 309-573 chr9 15320797 15320962 + 3 NA Intergenic Intergenic -13519 NM_001168340 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 799-3 chr1 118397126 118397646 + 3 NA Intergenic Intergenic -212158 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 826-14 chr12 22023680 22024051 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -22309 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 1215-8 chr4 87292376 87293221 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 7785 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 813-38 chr6 164919374 164919918 + 3 NA Intergenic L1M3e|LINE|L1 -97583 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 450-225 chr4 66028891 66029167 + 3 NA Intergenic MIRb|SINE|MIR -247795 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 446-231 chr5 16047981 16048229 + 3 NA Intergenic Intergenic 112923 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 927-27 chr8 142389283 142389958 + 3 NA intron (NM_001366903, intron 1 of 9) L1ME4b|LINE|L1 13562 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 276-61 chr10 77324433 77324602 + 3 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 26244 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 169-53 chr18 10162601 10162697 + 3 NA Intergenic Intergenic 248633 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 293-196 chr2 105534070 105534242 + 3 NA Intergenic L2b|LINE|L2 76403 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 244-91 chr14 57125957 57126122 + 3 NA Intergenic L1MD2|LINE|L1 142866 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 765-15 chr12 38025439 38025869 + 3 NA Intergenic ALR/Alpha|Satellite|centr -291120 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 599-69 chr20 14790777 14791148 + 3 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 138556 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 425-310 chr8 114998401 114998599 + 3 NA Intergenic Intergenic 669513 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 461-35 chr10 76486513 76486706 + 3 NA intron (NM_001305581, intron 6 of 6) L1ME3A|LINE|L1 -401435 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 607-7 chr1 86649001 86649412 + 3 NA non-coding (NR_024604, exon 13 of 15) non-coding (NR_024604, exon 13 of 15) 14930 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 1203-4 chr11 129559935 129560565 + 3 NA Intergenic L1P4d|LINE|L1 57019 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 724-105 chr9 99600448 99600819 + 3 NA intron (NR_109802, intron 3 of 6) Tigger13a|DNA|TcMar-Tigger 219256 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 511-217 chr5 173207066 173207294 + 3 NA Intergenic AluJb|SINE|Alu 28026 NM_001166176 1482 Hs.54473 NM_004387 ENSG00000183072 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 804-71 chr8 101540401 101540743 + 3 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 48133 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 493-242 chr5 59405259 59405489 + 3 NA intron (NM_001165899, intron 3 of 16) L1MA3|LINE|L1 -48404 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 645-38 chr15 61516358 61516876 + 3 NA Intergenic Intergenic -213301 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 724-71 chr5 81741730 81742079 + 3 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 9349 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 595-129 chr5 35625843 35626190 + 3 NA intron (NM_144722, intron 1 of 9) intron (NM_144722, intron 1 of 9) 8153 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 255-464 chr9 117681527 117681683 + 3 NA Intergenic Intergenic -22798 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 557-148 chr4 117173487 117173808 + 3 NA Intergenic Intergenic -88071 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 245-277 chr5 36642321 36642483 + 3 NA intron (NM_004172, intron 3 of 9) intron (NM_004172, intron 3 of 9) 35796 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 828-5 chr10 32618865 32619422 + 3 NA intron (NM_001321115, intron 19 of 43) intron (NM_001321115, intron 19 of 43) 173003 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 431-318 chr9 71519671 71519998 + 3 NA Intergenic Intergenic -72863 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 472-337 chr8 138631678 138631945 + 3 NA intron (NM_152888, intron 49 of 64) L2a|LINE|L2 -134081 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 288-59 chr10 123677154 123677268 + 3 NA intron (NM_153442, intron 2 of 2) intron (NM_153442, intron 2 of 2) 10856 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 421-41 chr11 79475812 79476012 + 3 NA Intergenic HAL1|LINE|L1 -34882 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 795-44 chr5 61888468 61888945 + 3 NA Intergenic L1MA4|LINE|L1 -153008 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 1055-19 chr9 31123877 31124488 + 3 NA Intergenic MER84-int|LTR|ERV1 257308 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 517-225 chr5 151417693 151417905 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -19247 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 513-75 chr14 59996076 59996393 + 3 NA intron (NR_075071, intron 17 of 32) Charlie18a|DNA|hAT-Charlie 76521 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 288-198 chr2 80901407 80901531 + 3 NA Intergenic Intergenic 565477 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 993-8 chr15 57892727 57893085 + 3 NA Intergenic Intergenic 121117 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 569-2 chr1 49853192 49853584 + 3 NA intron (NM_001323575, intron 1 of 12) L1MCc|LINE|L1 170566 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 592-56 chr15 64906598 64906855 + 3 NA Intergenic MER1B|DNA|hAT-Charlie -5176 NM_182703 348094 Hs.207157 NM_182703 ENSG00000166839 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 267-461 chrX 120996722 120996913 + 3 NA Intergenic Intergenic -11033 NM_001080138 728042 Hs.729566 NM_001080138 ENSG00000226600 CT47A9 CT47.9 cancer/testis antigen family 47 member A9 protein-coding 462-82 chr14 65344912 65345139 + 3 NA Intergenic L2b|LINE|L2 -9842 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 509-221 chr6 126669250 126669570 + 3 NA Intergenic Intergenic 184779 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 986-15 chr17 33817854 33818257 + 3 NA intron (NM_001094, intron 1 of 9) MLT1G1|LTR|ERVL-MaLR -284295 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 561-157 chr5 36568182 36568435 + 3 NA Intergenic Intergenic -38047 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 402-334 chr8 46452575 46452840 + 3 NA Intergenic ALR/Alpha|Satellite|centr 164936 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 374-47 chr11 38839710 38839865 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 190929 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 579-37 chr14 68989391 68989722 + 3 NA Intergenic Intergenic 9874 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 487-260 chr7 3017993 3018240 + 3 NA intron (NM_001324281, intron 1 of 25) MER41C|LTR|ERV1 25751 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 370-158 chr15 60494776 60495034 + 3 NA 3' UTR (NM_002943, exon 11 of 11) 3' UTR (NM_002943, exon 11 of 11) 15727 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 618-68 chr2 157510844 157511163 + 3 NA Intergenic L1ME2|LINE|L1 -66914 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 245-155 chr16 86935798 86935967 + 3 NA Intergenic L1MB7|LINE|L1 -121902 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 1069-7 chr21 27190987 27191569 + 3 NA Intergenic Intergenic -224190 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 431-273 chr7 85973653 85973904 + 3 NA Intergenic Intergenic 552656 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 434-310 chr9 23114394 23114620 + 3 NA Intergenic Intergenic 468307 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 829-22 chr22 26920653 26921068 + 3 NA TTS (NR_110540) TTS (NR_110540) 17568 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 557-78 chr18 37906842 37907072 + 3 NA Intergenic Intergenic 249822 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 1166-4 chr20 46502893 46503640 + 3 NA intron (NM_199441, intron 5 of 5) intron (NM_199441, intron 5 of 5) 10306 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 725-16 chr11 84175987 84176423 + 3 NA intron (NM_001142700, intron 1 of 19) intron (NM_001142700, intron 1 of 19) 97075 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 412-75 chr13 36079162 36079335 + 3 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 52134 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 514-37 chr10 101859751 101859992 + 3 NA intron (NM_024541, intron 24 of 25) intron (NM_024541, intron 24 of 25) -15951 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 736-78 chr7 37126913 37127332 + 3 NA intron (NM_001206480, intron 14 of 21) intron (NM_001206480, intron 14 of 21) 129326 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 683-7 chr10 52016207 52016597 + 3 NA intron (NM_001098512, intron 5 of 17) THE1D|LTR|ERVL-MaLR 297726 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 523-26 chr10 39359641 39359849 + 3 NA Intergenic ALR/Alpha|Satellite|centr 663149 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1340-5 chr2 118891235 118891871 + 3 NA Intergenic L1M8|LINE|L1 -43370 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 625-80 chr5 25075461 25075786 + 3 NA Intergenic L1MA3|LINE|L1 115033 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 345-534 chr8 121988232 121988492 + 3 NA Intergenic L1MC1|LINE|L1 -346922 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 519-255 chr9 107267501 107267687 + 3 NA Intergenic Intergenic -15685 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 258-258 chr3 67503427 67503528 + 3 NA intron (NM_001177599, intron 7 of 10) intron (NM_001177599, intron 7 of 10) 151137 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 448-213 chr5 72665208 72665382 + 3 NA Intergenic Intergenic -4626 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 553-97 chr19 37129290 37129592 + 3 NA 3' UTR (NM_144689, exon 5 of 5) 3' UTR (NM_144689, exon 5 of 5) 42995 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 690-76 chr4 36705913 36706350 + 3 NA Intergenic MIR|SINE|MIR -64231 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 545-227 chr7 82700206 82700417 + 3 NA Intergenic MER41B|LTR|ERV1 -256355 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 457-201 chr5 80910943 80911199 + 3 NA Intergenic L1ME1|LINE|L1 -49292 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 442-109 chr18 6532432 6532648 + 3 NA intron (NR_120518, intron 2 of 5) MER61C|LTR|ERV1 21124 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 409-155 chr2 172949697 172949965 + 3 NA intron (NM_001282901, intron 1 of 24) intron (NM_001282901, intron 1 of 24) 21626 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 690-52 chr19 29188800 29189141 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 24181 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 299-128 chr14 45808167 45808341 + 3 NA Intergenic Intergenic -92652 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 492-27 chr10 85226789 85227014 + 3 NA Intergenic Intergenic -27963 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 465-205 chr4 79130972 79131231 + 3 NA intron (NR_038342, intron 3 of 5) L1M3|LINE|L1 159353 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 641-66 chr2 138398813 138399160 + 3 NA Intergenic L1MA3|LINE|L1 -102784 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 534-72 chr14 58825780 58826002 + 3 NA Intergenic MIRb|SINE|MIR -2397 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 392-11 chr1 160931325 160931483 + 3 NA Intergenic L1M5|LINE|L1 -1061 NR_110695 101928372 NR_110695 ENSG00000198358 LOC101928372 - uncharacterized LOC101928372 ncRNA 525-90 chr17 54124798 54124978 + 3 NA Intergenic Intergenic 301961 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 263-262 chr3 100120449 100120609 + 3 NA intron (NM_001167924, intron 1 of 9) intron (NM_001167924, intron 1 of 9) 5599 NM_001167924 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 842-5 chr10 28971771 28972260 + 3 NA Intergenic Intergenic 125607 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 694-116 chr7 4379007 4379398 + 3 NA Intergenic Intergenic -244365 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 1111-10 chr5 38851131 38851635 + 3 NA intron (NM_003999, intron 1 of 17) LTR16B1|LTR|ERVL 5371 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 424-25 chr10 44501850 44502030 + 3 NA Intergenic L1MB7|LINE|L1 -116843 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 446-186 chr3 65625737 65625962 + 3 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -267967 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 893-10 chr11 109613565 109613888 + 3 NA Intergenic L1PA15|LINE|L1 191536 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 327-477 chr8 16494560 16494710 + 3 NA Intergenic Intergenic -301844 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 462-25 chr10 44656321 44656483 + 3 NA Intergenic L1MC|LINE|L1 -254914 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 498-102 chr16 83250720 83250921 + 3 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -257526 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 1023-9 chr14 46233473 46233998 + 3 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 169576 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1041-2 chr13 68085308 68085752 + 3 NA Intergenic Intergenic 713143 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 460-136 chr2 49233962 49234249 + 3 NA Intergenic Intergenic -79578 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 527-134 chr2 95236550 95236823 + 3 NA Intergenic MER31-int|LTR|ERV1 -37763 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 687-91 chr5 63596693 63597137 + 3 NA Intergenic HAL1|LINE|L1 365377 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 263-247 chr22 34268095 34268227 + 3 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -345273 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 591-36 chr13 103588744 103589021 + 3 NA Intergenic L3|LINE|CR1 163682 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 449-35 chr10 91573320 91573548 + 3 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 38026 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 824 chr1 209921217 209921687 + 3 NA Intergenic MLT1O|LTR|ERVL-MaLR -16722 NM_001146261 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 537-28 chr10 66822280 66822645 + 3 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -103574 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 803-32 chr22 33457053 33457563 + 3 NA intron (NM_133642, intron 6 of 14) (T)n|Simple_repeat|Simple_repeat -20639 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 317-543 chrX 27632744 27632948 + 3 NA non-coding (NR_148432, exon 2 of 2) non-coding (NR_148432, exon 2 of 2) 42502 NR_148432 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 475-128 chr2 57402644 57402909 + 3 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -504875 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 500-41 chr10 124272058 124272447 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 146671 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 640-93 chr4 45276379 45276874 + 3 NA Intergenic Intergenic -549992 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 597-137 chr9 74880175 74880419 + 3 NA intron (NM_017662, intron 1 of 38) L1M2|LINE|L1 7050 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 362-456 chr9 2270590 2270753 + 3 NA Intergenic Intergenic 112215 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 168-111 chr8 84746778 84746844 + 3 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 40884 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 528-201 chr5 53383730 53383958 + 3 NA Intergenic MLT2B3|LTR|ERVL -96785 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 311-266 chr2 115614992 115615115 + 3 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 271238 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 560-43 chr13 82338788 82338993 + 3 NA Intergenic L1MA9|LINE|L1 -1111907 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 577-205 chr9 96783479 96783771 + 3 NA Intergenic MER74A|LTR|ERVL -5496 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 604-131 chr5 45856582 45856839 + 3 NA Intergenic L1MA6|LINE|L1 -160330 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 529-85 chr17 34073304 34073603 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 83353 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 386-11 chr1 108804267 108804485 + 3 NA intron (NM_007269, intron 17 of 18) L1MEd|LINE|L1 52718 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 547-62 chr14 29850905 29851277 + 3 NA intron (NM_001330069, intron 1 of 18) L1PA16|LINE|L1 76005 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 773-11 chr14 81036234 81036594 + 3 NA intron (NM_001142626, intron 1 of 8) L1MA6|LINE|L1 80793 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 655-22 chr11 83984454 83984731 + 3 NA intron (NM_001142699, intron 11 of 27) L2b|LINE|L2 288688 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 361-326 chr4 76953628 76953910 + 3 NA intron (NM_018243, intron 1 of 9) intron (NM_018243, intron 1 of 9) 4017 NM_018243 55752 Hs.128199 NM_018243 ENSG00000138758 SEPTIN11 SEPT11 septin 11 protein-coding 505-60 chr12 58769912 58770096 + 3 NA intron (NR_120452, intron 1 of 7) L1PREC2|LINE|L1 11712 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 690-109 chrX 23629514 23629804 + 3 NA Intergenic Intergenic -37834 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 333-283 chr2 202842728 202842947 + 3 NA intron (NM_001288622, intron 1 of 12) L1M2|LINE|L1 -13603 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 269-205 chr2 115542968 115543134 + 3 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 199236 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 519-156 chr4 32421177 32421494 + 3 NA Intergenic L1MA9|LINE|L1 70297 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 217-285 chr5 15247534 15247695 + 3 NA intron (NR_109944, intron 1 of 2) L1MEd|LINE|L1 18946 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 431-204 chr4 88118280 88118494 + 3 NA intron (NM_001257386, intron 6 of 15) intron (NM_001257386, intron 6 of 15) 40252 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 1373-7 chr5 27891318 27892158 + 3 NA Intergenic L1ME3A|LINE|L1 395927 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 704-56 chr3 186007848 186008141 + 3 NA Intergenic AluJb|SINE|Alu 48051 NR_151491 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 421-172 chr21 21976316 21976506 + 3 NA Intergenic Intergenic 122048 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 495-75 chr16 24199792 24199961 + 3 NA intron (NM_212535, intron 16 of 16) intron (NM_212535, intron 16 of 16) -3240 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 581-64 chr18 2268058 2268294 + 3 NA Intergenic Intergenic 303329 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 500-276 chr7 109585784 109586144 + 3 NA Intergenic L1PA16|LINE|L1 374249 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 631-84 chr3 84387333 84387575 + 3 NA Intergenic Intergenic 482121 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 577-210 chrX 99216230 99216482 + 3 NA Intergenic Intergenic 1193917 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 420-305 chr9 29414131 29414372 + 3 NA Intergenic Intergenic -200650 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 517-159 chr20 39901844 39902170 + 3 NA Intergenic L2c|LINE|L2 -102454 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 251-366 chr7 39656426 39656548 + 3 NA intron (NM_005402, intron 1 of 4) intron (NM_005402, intron 1 of 4) 32915 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 616-98 chr20 60604136 60604442 + 3 NA Intergenic Intergenic 39727 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 604-98 chr20 42696827 42697170 + 3 NA intron (NM_133170, intron 6 of 31) MLT1F2|LTR|ERVL-MaLR 11515 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 857-6 chr1 221943235 221943869 + 3 NA intron (NR_149057, intron 1 of 3) MER31-int|LTR|ERV1 -22858 NR_149071 110806276 NR_149071 LINC02474 - long intergenic non-protein coding RNA 2474 ncRNA 308-336 chr4 65201744 65201885 + 3 NA Intergenic Intergenic -197314 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 511-149 chr20 51992976 51993195 + 3 NA Intergenic MER20|DNA|hAT-Charlie 112399 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 465-42 chr11 8305905 8306096 + 3 NA Intergenic L1MEi|LINE|L1 -37213 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 459-332 chrX 41843319 41843551 + 3 NA intron (NM_003688, intron 2 of 26) L1MB7|LINE|L1 79599 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 844-59 chr6 104113430 104113983 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 745840 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 494-218 chr5 15652697 15652873 + 3 NA intron (NM_001278317, intron 2 of 3) Tigger1|DNA|TcMar-Tigger -37783 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 378-13 chr1 81433505 81433682 + 3 NA intron (NM_001366004, intron 2 of 27) MIR|SINE|MIR 124109 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 449-258 chr7 97079730 97080014 + 3 NA Intergenic MER31A|LTR|ERV1 -36721 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 1087-3 chr12 62020207 62020799 + 3 NA intron (NM_178539, intron 1 of 4) L2c|LINE|L2 172336 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 209-42 chr10 71055337 71055462 + 3 NA Intergenic L1MC1|LINE|L1 116346 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 680-80 chr3 6496547 6496991 + 3 NA Intergenic L1MA9|LINE|L1 308680 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 255-88 chr13 26530879 26531042 + 3 NA Intergenic LTR48B|LTR|ERV1 -26723 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 507-221 chr6 61201423 61201609 + 3 NA Intergenic MER52-int|LTR|ERV1 -372614 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 716-63 chr5 55072405 55072810 + 3 NA Intergenic Intergenic -30039 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 287-180 chr19 12633271 12633385 + 3 NA 3' UTR (NM_153358, exon 4 of 4) 3' UTR (NM_153358, exon 4 of 4) 22408 NM_153358 163049 Hs.720677 NM_153358 ENSG00000173875 ZNF791 - zinc finger protein 791 protein-coding 690-81 chr5 21105175 21105590 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -354098 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 348-194 chr17 79055390 79055535 + 3 NA Intergenic L1MB7|LINE|L1 -19475 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 351-108 chr13 56555352 56555618 + 3 NA Intergenic L1ME5|LINE|L1 -585433 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 504-109 chr18 64025861 64026181 + 3 NA Intergenic Intergenic 55940 NM_001366198 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 C18orf53|CAP2|PI-8|PI8|PSS5 serpin family B member 8 protein-coding 513-98 chr16 65934267 65934569 + 3 NA Intergenic Intergenic -358118 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 560-170 chr7 45642241 45642460 + 3 NA intron (NM_001281768, intron 5 of 9) MER74A|LTR|ERVL 67982 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 477-96 chr14 81188322 81188590 + 3 NA intron (NM_015859, intron 7 of 8) L1MB5|LINE|L1 14378 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 538-138 chr20 42826435 42826701 + 3 NA intron (NM_133170, intron 2 of 31) U2|snRNA|snRNA 141085 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 376-94 chr13 84620526 84620740 + 3 NA Intergenic Intergenic -163021 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 678-63 chr22 35197186 35197433 + 3 NA intron (NR_126356, intron 1 of 5) MIRb|SINE|MIR 33747 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 534-88 chr17 42216819 42217073 + 3 NA intron (NM_012448, intron 11 of 18) AluSz|SINE|Alu -22452 NM_001142623 84514 Hs.38039 NM_032484 ENSG00000167925 GHDC D11LGP1|LGP1 GH3 domain containing protein-coding 185-179 chr6 54453146 54453234 + 3 NA Intergenic L2c|LINE|L2 144749 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 767-3 chr1 191465596 191465914 + 3 NA Intergenic Intergenic -237257 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 569-28 chr10 72721685 72721946 + 3 NA TTS (NR_039823) TTS (NR_039823) 786 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 861-29 chr7 135998185 135998649 + 3 NA Intergenic Intergenic -21058 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 435-156 chr3 108707917 108708160 + 3 NA Intergenic L1MC|LINE|L1 49245 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 512-222 chr5 105412825 105413053 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 313465 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 543-185 chr4 79568411 79568762 + 3 NA intron (NR_038826, intron 3 of 3) intron (NR_038826, intron 3 of 3) 75993 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 501-219 chr5 144596903 144597090 + 3 NA Intergenic L2c|LINE|L2 391605 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 469-137 chr2 104244687 104244872 + 3 NA Intergenic L1MA5|LINE|L1 163553 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 630-83 chr3 37642281 37642665 + 3 NA intron (NM_002207, intron 16 of 27) intron (NM_002207, intron 16 of 27) 190332 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 520-119 chr17 69799836 69800150 + 3 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -161714 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 524-161 chr4 10838670 10839056 + 3 NA Intergenic L1MB2|LINE|L1 -154095 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 682-38 chr16 79011854 79012212 + 3 NA intron (NM_001291997, intron 7 of 7) L2a|LINE|L2 588704 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 501-77 chr16 81971892 81972211 + 3 NA Intergenic L1MB1|LINE|L1 39419 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 927 chr11 13401024 13401454 + 3 NA intron (NM_032320, intron 8 of 8) intron (NM_032320, intron 8 of 8) 39040 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 603-165 chr8 101222858 101223206 + 3 NA Intergenic Intergenic -16968 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 646-90 chr3 138670199 138670455 + 3 NA intron (NM_006219, intron 19 of 23) intron (NM_006219, intron 19 of 23) 37294 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 472-206 chr3 74722718 74722884 + 3 NA Intergenic L1MCb|LINE|L1 -201661 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 599-65 chr2 176343442 176343931 + 3 NA Intergenic L1MEc|LINE|L1 74244 NM_001319098 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 520-289 chr8 15883505 15883748 + 3 NA Intergenic L1ME3B|LINE|L1 302646 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 626-26 chr11 85104107 85104356 + 3 NA intron (NM_001351274, intron 5 of 26) L1MB8|LINE|L1 -180810 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 769-67 chr8 103671617 103672101 + 3 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -147361 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 559-118 chr3 11122321 11122635 + 3 NA Intergenic L1MC5|LINE|L1 -14760 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 532-78 chr15 60052548 60052891 + 3 NA Intergenic Intergenic 48408 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 648-55 chr17 5183878 5184205 + 3 NA exon (NM_032530, exon 2 of 2) exon (NM_032530, exon 2 of 2) 7827 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 655-17 chr10 86607106 86607500 + 3 NA Intergenic L1MEg|LINE|L1 -47244 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 564-73 chr17 34458090 34458376 + 3 NA Intergenic Intergenic -95000 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 870-30 chr5 52067362 52067838 + 3 NA Intergenic Intergenic 59569 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 366-296 chr3 194871193 194871450 + 3 NA Intergenic Intergenic -102612 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 491-104 chr19 34728441 34728638 + 3 NA Intergenic L1M5|LINE|L1 -5704 NM_001145665 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 507-33 chr10 66224518 66224755 + 3 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 653211 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 371-192 chr2 153549819 153549985 + 3 NA Intergenic Intergenic -71140 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 558-199 chr7 40738713 40739031 + 3 NA intron (NM_024728, intron 13 of 14) L1ME3E|LINE|L1 241067 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 444-260 chr8 91696925 91697234 + 3 NA Intergenic L1MA1|LINE|L1 320601 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 473-83 chr14 52178650 52178933 + 3 NA Intergenic AluJo|SINE|Alu -88907 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 557-121 chr20 61864747 61865001 + 3 NA intron (NM_001252339, intron 5 of 14) intron (NM_001252339, intron 5 of 14) 88788 NR_031658 100302168 NR_031658 ENSG00000284193 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 565-155 chr6 40718395 40718657 + 3 NA Intergenic MLT2B1|LTR|ERVL -131162 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 507-129 chr2 99743704 99744020 + 3 NA intron (NM_001025108, intron 9 of 23) intron (NM_001025108, intron 9 of 23) -253845 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 637-122 chr9 109267765 109268095 + 3 NA intron (NM_019114, intron 3 of 25) intron (NM_019114, intron 3 of 25) 53034 NM_018424 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 465-232 chr5 98616490 98616751 + 3 NA Intergenic L1MB2|LINE|L1 -152012 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 713-84 chrX 64372029 64372533 + 3 NA intron (NM_017677, intron 1 of 13) L1MD2|LINE|L1 23171 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 557-33 chr11 54959114 54959412 + 3 NA Intergenic ALR/Alpha|Satellite|centr 252431 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 481-5 chr1 90784604 90784774 + 3 NA intron (NR_135038, intron 2 of 2) MIRb|SINE|MIR 51472 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 779-12 chr10 123131697 123132118 + 3 NA Intergenic Intergenic -4063 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 996-14 chr19 56437535 56438390 + 3 NA Intergenic L2a|LINE|L2 33630 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 495-66 chr15 35294316 35294532 + 3 NA Intergenic Intergenic 57098 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 394-49 chr10 95326711 95326956 + 3 NA intron (NM_001034956, intron 24 of 27) MER33|DNA|hAT-Charlie -35830 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 769-23 chr19 37831662 37832071 + 3 NA intron (NR_040015, intron 4 of 5) intron (NR_040015, intron 4 of 5) 14455 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 483-126 chr2 141973347 141973530 + 3 NA intron (NM_018557, intron 1 of 90) (ATGTAT)n|Simple_repeat|Simple_repeat 158263 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 252-246 chr22 48770891 48771048 + 3 NA Intergenic L1M7|LINE|L1 -9326 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 293-447 chr8 119027290 119027418 + 3 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -39893 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 487-275 chr7 68686362 68686557 + 3 NA Intergenic Intergenic 666206 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 564-121 chr3 18818106 18818342 + 3 NA Intergenic L1MB8|LINE|L1 -330286 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 424-116 chr19 36505031 36505182 + 3 NA Intergenic L1MB3|LINE|L1 15479 NR_036504 728752 Hs.729762 NR_036504 ENSG00000267309 LOC728752 - uncharacterized LOC728752 ncRNA 879-10 chr17 65503096 65503539 + 3 NA Intergenic Intergenic 45776 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 767-48 chr7 27357257 27357638 + 3 NA Intergenic Intergenic -110218 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 666-23 chr12 130291119 130291533 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -46561 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 640-135 chr8 105146067 105146360 + 3 NA Intergenic Intergenic -172225 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 360-37 chr10 53148644 53148847 + 3 NA Intergenic Intergenic -377045 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 577-34 chr10 109119644 109119896 + 3 NA Intergenic Intergenic 803476 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 502-241 chr7 25985840 25986133 + 3 NA Intergenic Intergenic -36000 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 484-253 chr7 121670093 121670308 + 3 NA Intergenic L1M4b|LINE|L1 -202961 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 266-259 chr3 107780910 107781007 + 3 NA intron (NM_020235, intron 13 of 16) intron (NM_020235, intron 13 of 16) 97110 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 774-4 chr1 215857208 215857602 + 3 NA intron (NM_206933, intron 44 of 71) MER72|LTR|ERV1 -215060 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 464-123 chr2 98499406 98499594 + 3 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 53490 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 576-131 chr5 33138209 33138504 + 3 NA Intergenic L1M3b|LINE|L1 -91379 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 301-31 chr1 242077080 242077270 + 3 NA Intergenic Intergenic -78077 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 647-82 chr5 46101786 46102219 + 3 NA Intergenic Intergenic -405622 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 614-23 chr12 14127076 14127356 + 3 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -146860 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 490-53 chr11 24979335 24979649 + 3 NA intron (NM_001009909, intron 8 of 11) intron (NM_001009909, intron 8 of 11) 482439 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 269-167 chr18 66655199 66655313 + 3 NA Intergenic Intergenic -51166 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 378-365 chr6 35303976 35304197 + 3 NA intron (NM_022047, intron 1 of 10) AluSq2|SINE|Alu 6268 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6 guanine nucleotide exchange factor protein-coding 635-42 chr18 1141968 1142335 + 3 NA Intergenic Intergenic -214158 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 218-181 chr2 208726319 208726474 + 3 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 183754 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 434-268 chr7 89912090 89912341 + 3 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -207185 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 643-76 chr3 130833847 130834213 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -16565 NM_001199180 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 490-233 chr5 162773676 162773972 + 3 NA Intergenic L1MD1|LINE|L1 -663747 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 548-150 chr3 99400906 99401196 + 3 NA Intergenic Intergenic -237543 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 869-19 chr15 86633294 86633787 + 3 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -299340 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 477-178 chr20 46529030 46529289 + 3 NA Intergenic Intergenic -15587 NM_001270497 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 308-270 chr20 41016940 41017110 + 3 NA intron (NR_145525, intron 2 of 2) L2a|LINE|L2 -11797 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 857-47 chr6 1569995 1570333 + 3 NA Intergenic L1M4b|LINE|L1 -35367 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 553-66 chr14 81825366 81825726 + 3 NA Intergenic Intergenic -82408 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 480-144 chr2 51823199 51823378 + 3 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -547360 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 226-176 chr2 117688314 117688438 + 3 NA Intergenic L1MDa|LINE|L1 -126315 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 931-3 chr10 123876744 123877202 + 3 NA intron (NM_198148, intron 2 of 13) MIR|SINE|MIR 14834 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 542-66 chr15 27595016 27595357 + 3 NA Intergenic Intergenic -433867 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 584-3 chr1 40515727 40516014 + 3 NA 3' UTR (NM_022774, exon 3 of 3) 3' UTR (NM_022774, exon 3 of 3) 7151 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 639-24 chr11 129429565 129429808 + 3 NA intron (NM_003658, intron 1 of 3) L1M5|LINE|L1 53838 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 644-29 chr17 51558048 51558425 + 3 NA Intergenic Intergenic 122809 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 668-69 chr3 178915968 178916414 + 3 NA Intergenic L1PB4|LINE|L1 -55786 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 472-138 chr18 78362018 78362258 + 3 NA Intergenic Intergenic -368411 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 495-155 chr3 54164878 54165078 + 3 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 42426 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 594-107 chr4 149520068 149520439 + 3 NA intron (NM_001363507, intron 12 of 13) MIR|SINE|MIR 295590 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 554-80 chr14 79730881 79731100 + 3 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) 451610 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 419-216 chr4 152252178 152252339 + 3 NA Intergenic L1MC1|LINE|L1 -85397 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 416-19 chr1 194746487 194746644 + 3 NA Intergenic L1M5|LINE|L1 1342150 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 400-91 chr14 59807755 59808044 + 3 NA intron (NM_021136, intron 1 of 8) LTR78|LTR|ERV1 62877 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 273-405 chr6 150262493 150262649 + 3 NA Intergenic Intergenic -106441 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 781-7 chr10 111880291 111880722 + 3 NA Intergenic Intergenic 303259 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 657-54 chr2 147508114 147508404 + 3 NA Intergenic L1MA7|LINE|L1 -336258 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 388-23 chr1 190055764 190056029 + 3 NA Intergenic Intergenic 420114 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 790-56 chr8 123841549 123841993 + 3 NA Intergenic L1M5|LINE|L1 -10216 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 675-34 chr16 73222204 73222528 + 3 NA Intergenic L1MC1|LINE|L1 -77919 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 417-16 chr1 164111861 164112102 + 3 NA Intergenic Intergenic -447379 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 468-26 chr10 32625029 32625313 + 3 NA intron (NM_001321115, intron 19 of 43) L1M3|LINE|L1 179031 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 398-359 chr8 110817318 110817489 + 3 NA Intergenic Intergenic 210030 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 676-64 chr2 156960060 156960430 + 3 NA Intergenic Intergenic -297460 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 1167-8 chr16 68550441 68551328 + 3 NA intron (NR_130976, intron 2 of 4) intron (NR_130976, intron 2 of 4) 11593 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 355-381 chr4 122081199 122081430 + 3 NA Intergenic Intergenic -89289 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 658-79 chr3 77682718 77683049 + 3 NA Intergenic L3|LINE|CR1 366080 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 762-77 chr8 129275844 129276305 + 3 NA Intergenic L1MB5|LINE|L1 -34834 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 479-87 chr18 47478914 47479112 + 3 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 98517 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 610-101 chr21 21410256 21410552 + 3 NA exon (NM_001352591, exon 10 of 18) exon (NM_001352591, exon 10 of 18) 263242 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 509-20 chr10 14053602 14053832 + 3 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) -20567 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 356-190 chr17 13731387 13731567 + 3 NA Intergenic L1MEj|LINE|L1 -129548 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 834-56 chr9 123458422 123458750 + 3 NA intron (NM_001352968, intron 12 of 18) intron (NM_001352968, intron 12 of 18) 27036 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 254-446 chrX 41663489 41663626 + 3 NA intron (NM_003688, intron 7 of 26) intron (NM_003688, intron 7 of 26) -25416 NM_005300 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 492-193 chr4 95789555 95789767 + 3 NA Intergenic Intergenic -50432 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 525-234 chr7 5065282 5065559 + 3 NA exon (NM_021163, exon 5 of 5) exon (NM_021163, exon 5 of 5) -6640 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 532-238 chr7 25295493 25295833 + 3 NA Intergenic Intergenic -67177 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 158-130 chrX 93813755 93813829 + 3 NA Intergenic Intergenic 139586 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 519-147 chr3 68108902 68109094 + 3 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 104751 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 324-50 chr10 32688449 32688611 + 3 NA intron (NM_001321115, intron 23 of 43) L1MC4a|LINE|L1 212942 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 482-45 chr10 125607593 125607775 + 3 NA intron (NM_001318133, intron 3 of 3) L2a|LINE|L2 33313 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 460-42 chr11 15239399 15239675 + 3 NA intron (NM_001042536, intron 11 of 12) L2b|LINE|L2 90435 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 423-37 chr10 105037736 105037896 + 3 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -371600 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 363-476 chr9 82621054 82621217 + 3 NA Intergenic Intergenic 442007 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 453-266 chr7 119893349 119893577 + 3 NA intron (NR_131960, intron 1 of 4) L1MEc|LINE|L1 13912 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 178-150 chr8 119345644 119345732 + 3 NA Intergenic Intergenic 20517 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 902-44 chrX 29558621 29559169 + 3 NA intron (NM_014271, intron 5 of 10) L1MA9|LINE|L1 -15383 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 320-103 chr11 114680455 114680663 + 3 NA intron (NM_182495, intron 2 of 5) intron (NM_182495, intron 2 of 5) 2032 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 370-228 chr2 51822885 51823072 + 3 NA intron (NR_135237, intron 6 of 10) MER5A1|DNA|hAT-Charlie -547670 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 412-220 chr3 131123490 131123688 + 3 NA intron (NM_001353036, intron 5 of 14) intron (NM_001353036, intron 5 of 14) 95861 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 649-50 chr2 67104618 67104927 + 3 NA intron (NR_110564, intron 1 of 4) LTR8A|LTR|ERV1 18326 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 288-29 chr1 184149265 184149398 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger 97601 NM_001300766 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 683-37 chr2 35829525 35829902 + 3 NA Intergenic Intergenic 358308 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 410-17 chr1 176536691 176536990 + 3 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 73665 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 428-5 chr1 114634692 114634860 + 3 NA intron (NM_198459, intron 1 of 17) AluSz6|SINE|Alu 35273 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 316-591 chr9 102074005 102074168 + 3 NA Intergenic L2b|LINE|L2 -335506 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 505-298 chr8 20938228 20938424 + 3 NA Intergenic Intergenic -15307 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 610-20 chr10 67294941 67295287 + 3 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 108296 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 595-50 chr14 68307634 68308007 + 3 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 320967 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 961-3 chr17 29660748 29661354 + 3 NA intron (NM_033389, intron 10 of 14) AluSq2|SINE|Alu -39628 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 728-111 chrX 65473500 65473922 + 3 NA Intergenic L1MA6|LINE|L1 -15024 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 521-47 chr11 50622694 50622991 + 3 NA Intergenic ALR/Alpha|Satellite|centr 213695 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 494-220 chr5 25889814 25890098 + 3 NA Intergenic LTR37-int|LTR|ERV1 699003 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 479-15 chr10 9955483 9955695 + 3 NA Intergenic Intergenic -103133 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 461-247 chr7 37984385 37984541 + 3 NA Intergenic Intergenic 63144 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 243-199 chr2 41296513 41296637 + 3 NA Intergenic Intergenic -580980 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 847-6 chr10 91343484 91343944 + 3 NA intron (NR_024467, intron 4 of 4) intron (NR_024467, intron 4 of 4) -65521 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 200-200 chr5 12793099 12793204 + 3 NA intron (NR_033383, intron 3 of 3) MIR|SINE|MIR 125292 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 468-281 chr6 88147782 88148027 + 3 NA intron (NM_001160226, intron 1 of 2) intron (NM_001160226, intron 1 of 2) -2567 NM_033181 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 501-208 chr5 65077298 65077507 + 3 NA Intergenic Intergenic 308472 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 641-48 chr17 71180051 71180466 + 3 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 21921 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 488-161 chr21 15429379 15429587 + 3 NA Intergenic Intergenic -300451 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 531-214 chr6 53106935 53107232 + 3 NA Intergenic Intergenic 36110 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 705-60 chr20 31161671 31162131 + 3 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -95763 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 638-86 chr3 72987380 72987702 + 3 NA Intergenic Intergenic -9202 NM_001318026 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 520-140 chr2 37289897 37290252 + 3 NA intron (NM_005813, intron 3 of 17) MER58B|DNA|hAT-Charlie 27010 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 373-242 chr21 24141696 24141860 + 3 NA Intergenic L2b|LINE|L2 179599 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 1138-12 chr6 71455677 71456205 + 3 NA intron (NR_121615, intron 6 of 7) L1MEg|LINE|L1 34914 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 549-142 chr3 87750440 87750740 + 3 NA Intergenic AluSx3|SINE|Alu -42116 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 505-276 chr6 148124358 148124591 + 3 NA Intergenic Tigger7|DNA|TcMar-Tigger -147854 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 572-50 chr13 78492366 78492656 + 3 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -103611 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 296-472 chr8 101759409 101759536 + 3 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 31497 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 304-543 chr9 29046637 29046786 + 3 NA intron (NM_001354574, intron 1 of 5) L1PREC2|LINE|L1 -157756 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 571 chr1 85756677 85756896 + 3 NA intron (NR_146345, intron 55 of 59) L1MB3|LINE|L1 -48353 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 312-104 chr12 37390680 37390890 + 3 NA Intergenic ALR/Alpha|Satellite|centr -925989 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 463-260 chr7 19974636 19974881 + 3 NA intron (NR_110114, intron 3 of 5) L1MC1|LINE|L1 165668 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 857 chr1 24457130 24457521 + 3 NA intron (NM_001322868, intron 8 of 9) L2b|LINE|L2 41300 NM_001322857 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 420-41 chr10 81114703 81115026 + 3 NA Intergenic L1MB2|LINE|L1 465067 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 392-47 chr11 124002039 124002324 + 3 NA Intergenic Intergenic -7020 NM_001355219 79490 NM_001355219 ENSG00000198674 OR10G6 OR10G6P|OR10G6Q olfactory receptor family 10 subfamily G member 6 protein-coding 443-43 chr10 110563313 110563483 + 3 NA Intergenic AluJr|SINE|Alu -4293 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 798-13 chr14 61664369 61664838 + 3 NA Intergenic Intergenic -30910 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 594-61 chr19 37683390 37683736 + 3 NA intron (NM_152605, intron 3 of 3) Tigger3|DNA|TcMar-Tigger 8752 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 450-131 chr2 14008567 14008759 + 3 NA Intergenic Intergenic 392295 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 391-133 chr17 28915637 28915857 + 3 NA intron (NM_001033561, intron 7 of 14) intron (NM_001033561, intron 7 of 14) -10528 NR_110803 101927018 Hs.665702 NR_110803 ENSG00000265845 LOC101927018 - uncharacterized LOC101927018 ncRNA 498-214 chr5 53590710 53590934 + 3 NA intron (NR_134475, intron 2 of 5) L1MB3|LINE|L1 30183 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 494-216 chr5 8810556 8810796 + 3 NA Intergenic L1PB1|LINE|L1 -29056 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 373-305 chr5 7642906 7643121 + 3 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 208120 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 450-32 chr10 62658908 62659146 + 3 NA intron (NM_199451, intron 6 of 7) intron (NM_199451, intron 6 of 7) 138579 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 383-121 chr14 84274198 84274379 + 3 NA Intergenic Intergenic -997644 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 399-259 chr5 159806158 159806387 + 3 NA intron (NR_109891, intron 2 of 2) L1M3|LINE|L1 65112 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 604-129 chr5 35670429 35670704 + 3 NA 3' UTR (NM_144722, exon 10 of 10) 3' UTR (NM_144722, exon 10 of 10) 52703 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 658-14 chr10 44443853 44444286 + 3 NA Intergenic L1MC3|LINE|L1 -58972 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 279-272 chr3 119202303 119202452 + 3 NA intron (NM_006952, intron 7 of 7) MIR|SINE|MIR -24109 NR_046574 100874201 Hs.721307 NR_046574 ENSG00000240254 B4GALT4-AS1 - B4GALT4 antisense RNA 1 ncRNA 449-186 chr4 44529229 44529407 + 3 NA Intergenic L2a|LINE|L2 -80509 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 716-15 chr12 7381044 7381494 + 3 NA intron (NM_001297650, intron 8 of 19) intron (NM_001297650, intron 8 of 19) 62916 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 198-88 chr17 28672140 28672232 + 3 NA intron (NM_003170, intron 1 of 36) intron (NM_003170, intron 1 of 36) 9981 NM_001320755 6830 Hs.250429 NM_003170 ENSG00000109111 SUPT6H SPT6|SPT6H|emb-5 SPT6 homolog, histone chaperone and transcription elongation factor protein-coding 505-82 chr14 51535752 51536019 + 3 NA intron (NM_001042481, intron 1 of 14) L1MB7|LINE|L1 46757 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 527-249 chr7 64545621 64545856 + 3 NA intron (NM_001130022, intron 1 of 3) intron (NM_001130022, intron 1 of 3) 17333 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 632-25 chr14 36615894 36616219 + 3 NA Intergenic L1MB1|LINE|L1 -33442 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 512-144 chr20 6158429 6158703 + 3 NA Intergenic L1PA16|LINE|L1 -35022 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 856-16 chr14 62876722 62877081 + 3 NA intron (NM_139318, intron 7 of 10) L1M4|LINE|L1 168557 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 616-54 chr16 26971837 26972248 + 3 NA Intergenic AluSx|SINE|Alu -94885 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 396-27 chr1 192936844 192937004 + 3 NA intron (NR_126003, intron 2 of 2) intron (NR_126003, intron 2 of 2) 11333 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 373-54 chr10 62641689 62641905 + 3 NA intron (NM_199451, intron 5 of 7) intron (NM_199451, intron 5 of 7) 121349 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 1019-9 chr2 35393616 35394191 + 3 NA Intergenic L1MEf|LINE|L1 -77502 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 490-190 chr4 94005 94185 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -30381 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 660-58 chr21 27385387 27385766 + 3 NA Intergenic AluSx|SINE|Alu -336803 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 654-47 chr17 54915678 54916039 + 3 NA exon (NM_005486, exon 7 of 16) exon (NM_005486, exon 7 of 16) 15006 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 178-11 chr1 206553823 206553930 + 3 NA intron (NM_182664, intron 2 of 4) MIR|SINE|MIR -3288 NM_182665 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 604-162 chr8 87451137 87451547 + 3 NA Intergenic AluSc|SINE|Alu 422673 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 628-87 chr3 63164031 63164284 + 3 NA Intergenic L1PA15|LINE|L1 61469 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 462-91 chr15 62155301 62155537 + 3 NA Intergenic Intergenic 9866 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 549-54 chr13 76070087 76070399 + 3 NA Intergenic L1M2|LINE|L1 -135111 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 767-6 chr10 65861689 65862176 + 3 NA Intergenic Intergenic 290507 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 678-68 chr3 73423588 73423955 + 3 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) 10224 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 399-326 chr9 73377282 73377471 + 3 NA Intergenic L1ME1|LINE|L1 225511 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 457-234 chr7 62805183 62805443 + 3 NA Intergenic ALR/Alpha|Satellite|centr 498743 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 319-323 chr3 21068081 21068227 + 3 NA Intergenic L2c|LINE|L2 -337572 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 274-199 chr2 46252109 46252214 + 3 NA Intergenic Intergenic -45246 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 818-14 chr12 20659351 20659704 + 3 NA intron (NM_000921, intron 15 of 15) intron (NM_000921, intron 15 of 15) -35828 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 1148-7 chr4 54988414 54989099 + 3 NA Intergenic L1MA4A|LINE|L1 136839 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 430-10 chr1 118748589 118748871 + 3 NA Intergenic Intergenic 239613 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 442-23 chr10 30793768 30794078 + 3 NA Intergenic Intergenic 70704 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 359-210 chr19 44485211 44485367 + 3 NA intron (NM_001288760, intron 3 of 6) intron (NM_001288760, intron 3 of 6) 15233 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 478-227 chr4 181088814 181089088 + 3 NA intron (NR_033918, intron 2 of 2) intron (NR_033918, intron 2 of 2) 70198 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 814-37 chr2 189994821 189995205 + 3 NA Intergenic L1PB1|LINE|L1 67716 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 643-45 chr18 1181855 1182094 + 3 NA Intergenic MLT2B1|LTR|ERVL 177655 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 444-276 chr8 139573071 139573357 + 3 NA Intergenic Intergenic 129909 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 486-179 chr20 58536708 58536897 + 3 NA intron (NR_034147, intron 5 of 6) THE1B|LTR|ERVL-MaLR -21403 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 832-45 chr8 135799210 135799617 + 3 NA Intergenic Intergenic 341957 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 676-16 chr10 12737979 12738487 + 3 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -12880 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 193-192 chr8 14339980 14340053 + 3 NA intron (NM_001322881, intron 2 of 6) L1ME5|LINE|L1 513494 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 429-121 chr17 69082935 69083213 + 3 NA intron (NM_080284, intron 35 of 38) intron (NM_080284, intron 35 of 38) -16468 NR_049834 100847008 NR_049834 ENSG00000265331 MIR4524B - microRNA 4524b ncRNA 632-13 chr11 21134486 21134910 + 3 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 465112 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 520-216 chr4 79129127 79129311 + 3 NA intron (NR_038342, intron 3 of 5) L1PA13|LINE|L1 157471 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 250-117 chr14 43427170 43427293 + 3 NA Intergenic Intergenic 1080052 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 597-20 chr10 48514010 48514295 + 3 NA intron (NR_144642, intron 3 of 9) L1MB7|LINE|L1 -2563 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 687-18 chr10 99096049 99096432 + 3 NA intron (NM_021828, intron 3 of 11) L1ME4a|LINE|L1 139635 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 750-50 chr3 109467654 109468105 + 3 NA intron (NR_109841, intron 3 of 4) intron (NR_109841, intron 3 of 4) 57889 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 739-29 chr19 37487284 37487845 + 3 NA 3' UTR (NM_001321992, exon 4 of 4) 3' UTR (NM_001321992, exon 4 of 4) 17993 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 409-285 chr7 79815596 79815760 + 3 NA Intergenic Intergenic -319153 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 372-461 chr7 71667464 71667645 + 3 NA intron (NM_022479, intron 7 of 10) MIR|SINE|MIR -359784 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 695-64 chr3 18101037 18101429 + 3 NA intron (NR_161333, intron 4 of 4) LTR85b|LTR|Gypsy? 138681 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 506-42 chr10 83758091 83758321 + 3 NA Intergenic L1M2b|LINE|L1 -81117 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 586-78 chr2 112980248 112980520 + 3 NA intron (NM_001278568, intron 3 of 3) intron (NM_001278568, intron 3 of 3) 2378 NM_019618 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 499-60 chr12 132167429 132167652 + 3 NA Intergenic Intergenic 22155 NR_146452 100996246 NR_146452 ENSG00000256576 LINC02361 - long intergenic non-protein coding RNA 2361 ncRNA 1254-8 chr7 43452942 43453570 + 3 NA intron (NM_015052, intron 12 of 29) L2a|LINE|L2 69286 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 389-121 chr16 50255447 50255667 + 3 NA Intergenic AluJb|SINE|Alu -10994 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 454-307 chr8 68834890 68835183 + 3 NA Intergenic L1MC3|LINE|L1 269154 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 546-95 chr18 65815616 65815934 + 3 NA intron (NM_001362438, intron 4 of 11) intron (NM_001362438, intron 4 of 11) 64763 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 479-232 chr7 77825293 77825656 + 3 NA intron (NM_001366088, intron 1 of 11) HAL1b|LINE|L1 -14654 NM_020432 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 407-88 chr14_GL000225v1_random 102368 102584 + 3 NA NA BSR/Beta|Satellite|Satellite NA NA 458-90 chr15 93834820 93835089 + 3 NA Intergenic Intergenic -21606 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 319-484 chr6 164209490 164209704 + 3 NA Intergenic Intergenic -538113 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 634-100 chr3 36843252 36843560 + 3 NA intron (NM_001329998, intron 17 of 23) intron (NM_001329998, intron 17 of 23) -20906 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 381-134 chr17 16623464 16623646 + 3 NA exon (NM_020787, exon 6 of 6) exon (NM_020787, exon 6 of 6) 30295 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 876-30 chr5 62998952 62999525 + 3 NA Intergenic Tigger4b|DNA|TcMar-Tigger 420419 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 655-38 chr14 63074534 63074940 + 3 NA Intergenic Intergenic -29279 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 918-29 chr8 142328843 142329494 + 3 NA intron (NM_001366903, intron 6 of 9) intron (NM_001366903, intron 6 of 9) 74014 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 405-66 chr12 72971462 72971660 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -187629 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 450-144 chr2 98398307 98398488 + 3 NA 3' UTR (NM_001298, exon 8 of 8) 3' UTR (NM_001298, exon 8 of 8) -46190 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 541-64 chr14 47999073 47999386 + 3 NA Intergenic Intergenic -204215 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 616-74 chr2 16692398 16692831 + 3 NA Intergenic L1M5|LINE|L1 -26780 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 501-65 chr14 44062472 44062692 + 3 NA Intergenic L1MA9|LINE|L1 444701 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 265-123 chr15 77205398 77205517 + 3 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) 19947 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 843-31 chr4 52549547 52549973 + 3 NA Intergenic Intergenic 106779 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 637-34 chr13 109538962 109539418 + 3 NA Intergenic Intergenic 138494 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 389-182 chr2 123414644 123414776 + 3 NA Intergenic L1MD1|LINE|L1 -341229 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 863-39 chr5 166103278 166103750 + 3 NA Intergenic L1P2|LINE|L1 822856 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 581-20 chr10 96440606 96440979 + 3 NA intron (NM_012465, intron 3 of 20) intron (NM_012465, intron 3 of 20) 73134 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 626-111 chr5 29398834 29399131 + 3 NA Intergenic L1M4|LINE|L1 -3006 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 329-229 chr18 4908303 4908487 + 3 NA Intergenic Intergenic -172787 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 549-159 chr5 13447012 13447355 + 3 NA Intergenic L2a|LINE|L2 -414297 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 464-74 chr15 36848712 36848935 + 3 NA Intergenic Intergenic -30317 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 734-30 chr19 30194740 30195142 + 3 NA Intergenic L1M4b|LINE|L1 -177443 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 452-229 chr6 52297439 52297619 + 3 NA Intergenic LTR60B|LTR|ERV1 -12787 NR_158963 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 390-235 chr3 53613644 53613812 + 3 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 119117 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 913-23 chr20 39408015 39408555 + 3 NA Intergenic Intergenic -183537 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 613-109 chr5 114694044 114694464 + 3 NA intron (NR_130785, intron 1 of 12) L1M5|LINE|L1 79159 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 743-79 chr7 34122407 34122855 + 3 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 217092 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 771-4 chr1 210995505 210995821 + 3 NA intron (NM_002238, intron 6 of 10) MER46C|DNA|TcMar-Tigger 137711 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 494-69 chr14 76738768 76739054 + 3 NA Intergenic L1MA4A|LINE|L1 -22557 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 1373-3 chr12 37991188 37991906 + 3 NA Intergenic ALR/Alpha|Satellite|centr -325227 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 848-8 chr11 114049047 114049478 + 3 NA Intergenic Intergenic -10449 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 445-290 chrX 16536851 16537030 + 3 NA Intergenic L1MEd|LINE|L1 90145 NR_039762 100616428 NR_039762 ENSG00000265144 MIR548AM - microRNA 548am ncRNA 513-43 chr11 44390493 44390770 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -80492 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 744-64 chr7 34510266 34510722 + 3 NA intron (NR_033665, intron 2 of 3) MSTD|LTR|ERVL-MaLR -147724 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 469-99 chr15 100487425 100487602 + 3 NA intron (NM_001290341, intron 6 of 13) MIR|SINE|MIR 56773 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 307-351 chr4 107271301 107271509 + 3 NA Intergenic Intergenic -235092 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 286-330 chr4 177765536 177765635 + 3 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 36828 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 232-361 chr7 81231165 81231303 + 3 NA Intergenic Intergenic -308845 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 869-44 chr8 82922954 82923536 + 3 NA intron (NR_134295, intron 2 of 3) L2a|LINE|L2 11141 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 613-96 chr4 58448847 58449179 + 3 NA Intergenic Intergenic 87315 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 517-137 chr2 122714330 122714602 + 3 NA Intergenic L1PA12|LINE|L1 359015 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 918-19 chr3 2330278 2330742 + 3 NA intron (NM_001206955, intron 1 of 23) MER21C|LTR|ERVL 91681 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 353-449 chr6 56017522 56017724 + 3 NA Intergenic Intergenic 74039 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 348-392 chr5 13520151 13520295 + 3 NA Intergenic L1MC3|LINE|L1 424257 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 499-225 chr6 66644499 66644725 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger 856733 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 378-303 chr4 43415704 43415980 + 3 NA Intergenic MER67C|LTR|ERV1 76701 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 422-323 chrX 151866751 151867026 + 3 NA Intergenic L1MEc|LINE|L1 44195 NR_136578 105373368 Hs.256904 NR_136578 MAGEA4-AS1 - MAGEA4 antisense RNA 1 ncRNA 721-81 chr7 71108209 71108747 + 3 NA Intergenic L1M5|LINE|L1 -23666 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 865-16 chr16 11216330 11216866 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 39584 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 363-178 chr17 54912495 54912726 + 3 NA intron (NM_001321176, intron 4 of 16) intron (NM_001321176, intron 4 of 16) 11758 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 967-7 chr14 102741140 102741570 + 3 NA Intergenic AluSx1|SINE|Alu -36094 NM_001199427 7187 Hs.510528 NM_003300 ENSG00000131323 TRAF3 CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118 TNF receptor associated factor 3 protein-coding 436-249 chr5 118734858 118735096 + 3 NA Intergenic L1ME4a|LINE|L1 138789 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 803-12 chr14 45638724 45639239 + 3 NA Intergenic Intergenic 76621 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 591-86 chr20 20921692 20922040 + 3 NA Intergenic Intergenic 184492 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 331-370 chr3 189490679 189490839 + 3 NA Intergenic Intergenic -105987 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 386-55 chr11 79750196 79750363 + 3 NA Intergenic L1MEc|LINE|L1 -309249 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 606-95 chr20 15967134 15967401 + 3 NA intron (NM_001351663, intron 12 of 17) intron (NM_001351663, intron 12 of 17) 18615 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 345-138 chr13 67170412 67170562 + 3 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 59849 NM_001318372 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 427-180 chr4 57670823 57671092 + 3 NA Intergenic Intergenic 245085 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 427-87 chr16 35756817 35757057 + 3 NA TTS (NR_033985) TTS (NR_033985) 10385 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 762-30 chr18 3800210 3800585 + 3 NA intron (NM_001242762, intron 2 of 9) L1ME4b|LINE|L1 44961 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 485-304 chr9 28905423 28905694 + 3 NA intron (NM_001354574, intron 2 of 5) L1MA8|LINE|L1 -16603 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 406-48 chr11 35771811 35772066 + 3 NA intron (NM_017583, intron 4 of 4) THE1-int|LTR|ERVL-MaLR 109163 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 615-44 chr15 47595932 47596246 + 3 NA intron (NM_001198999, intron 3 of 19) L1MA7|LINE|L1 -121416 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 463-156 chr2 214645589 214645864 + 3 NA Intergenic Intergenic 135544 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 423-58 chr12 20555773 20556091 + 3 NA intron (NM_000921, intron 1 of 15) L1M4|LINE|L1 -15932 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 519-170 chr5 8131958 8132242 + 3 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat 262952 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 562-56 chr14 25196900 25197291 + 3 NA Intergenic Intergenic -146798 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 419-38 chr10 90190574 90190731 + 3 NA Intergenic MIRb|SINE|MIR -233279 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 643-104 chr6 88493087 88493423 + 3 NA Intergenic L1M1|LINE|L1 46114 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 513-133 chr2 95133826 95134085 + 3 NA Intergenic L1MD1|LINE|L1 -11928 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 497-284 chr8 104610075 104610247 + 3 NA Intergenic L1PA15|LINE|L1 -21137 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 379-201 chr21 24223218 24223461 + 3 NA Intergenic Intergenic 98038 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 503-181 chr22 24544576 24544952 + 3 NA intron (NM_001284252, intron 4 of 5) AluJr4|SINE|Alu 10374 NM_001284254 83606 Hs.9850 NM_031444 ENSG00000138867 GUCD1 C22orf13|LLN4 guanylyl cyclase domain containing 1 protein-coding 646-49 chr18 37562570 37562912 + 3 NA intron (NM_001353701, intron 1 of 1) intron (NM_001353701, intron 1 of 1) 3057 NM_001353719 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 489-146 chr2 150302990 150303209 + 3 NA Intergenic L1ME3|LINE|L1 -46092 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 872-21 chr16 86094046 86094565 + 3 NA Intergenic Intergenic -101876 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 799-42 chr4 84928564 84929041 + 3 NA intron (NM_014991, intron 2 of 67) MER127|DNA|TcMar-Tigger -36814 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 362-287 chr3 193562155 193562354 + 3 NA Intergenic Intergenic -7359 NM_032279 84239 Hs.674423 NM_032279 ENSG00000127249 ATP13A4 - ATPase 13A4 protein-coding 522-232 chr7 33379093 33379397 + 3 NA intron (NM_198428, intron 17 of 22) L2a|LINE|L2 249681 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 501-18 chr1 248345923 248346156 + 3 NA Intergenic Intergenic -2736 NM_001001918 127066 Hs.553583 NM_001001918 ENSG00000177174 OR14C36 OR5BF1 olfactory receptor family 14 subfamily C member 36 protein-coding 395-172 chr2 102055804 102055966 + 3 NA Intergenic Intergenic -14505 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 455-97 chr17 70035039 70035349 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -16077 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 255-137 chr16 8497337 8497465 + 3 NA Intergenic AluJo|SINE|Alu 92437 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 161-40 chr18 72685289 72685371 + 3 NA Intergenic LTR37-int|LTR|ERV1 -140988 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 1041-6 chr2 67570913 67571520 + 3 NA Intergenic Intergenic 173883 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 638-89 chr3 82900259 82900600 + 3 NA Intergenic Intergenic 914287 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 276-289 chr3 43627689 43627807 + 3 NA intron (NM_001346469, intron 1 of 11) L1M5|LINE|L1 -5671 NM_001204831 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 571-92 chr20 12917816 12918120 + 3 NA intron (NR_109868, intron 6 of 11) intron (NR_109868, intron 6 of 11) 18995 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 1033-7 chr20 18263312 18263827 + 3 NA Intergenic AluSz6|SINE|Alu -24659 NM_001282995 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 494-101 chr18 7527990 7528250 + 3 NA Intergenic Intergenic -39196 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 316-71 chr10 60124851 60125027 + 3 NA intron (NM_001204403, intron 26 of 43) MIRb|SINE|MIR 16077 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 1083-2 chr11 116297259 116297721 + 3 NA Intergenic Intergenic -341932 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 354-87 chr11 102669439 102669585 + 3 NA Intergenic L1PA15|LINE|L1 36257 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 699-73 chr3 99307101 99307488 + 3 NA Intergenic Intergenic -331300 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 942-12 chr18 77688652 77689169 + 3 NA Intergenic Intergenic 304817 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 526-11 chr1 197031912 197032110 + 3 NA Intergenic L1MB3|LINE|L1 35256 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 579-23 chr11 80256146 80256514 + 3 NA Intergenic Intergenic 506473 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 564-113 chr21 23709890 23710154 + 3 NA Intergenic Intergenic -325187 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 575-80 chr2 35672913 35673161 + 3 NA Intergenic L1MA3|LINE|L1 201632 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 384-408 chr9 125901336 125901510 + 3 NA intron (NR_024122, intron 2 of 7) intron (NR_024122, intron 2 of 7) 153240 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 383-58 chr11 88454326 88454593 + 3 NA Intergenic L1ME3B|LINE|L1 -50117 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 349-414 chr5 52047748 52047946 + 3 NA Intergenic L2c|LINE|L2 39816 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 1181-2 chr1 104555594 104556354 + 3 NA Intergenic MLT2A1|LTR|ERVL 482951 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 277-377 chr7 52071687 52071851 + 3 NA Intergenic Intergenic -678513 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 285-272 chr3 87995698 87995868 + 3 NA Intergenic Intergenic 13207 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 462-303 chrX 88463885 88464158 + 3 NA Intergenic L1MA7|LINE|L1 -283204 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 467-68 chr13 58050779 58050942 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -114967 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 1248-7 chr5 79475134 79475812 + 3 NA intron (NM_001277078, intron 1 of 5) intron (NM_001277078, intron 1 of 5) 38363 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 769-39 chr3 10387857 10388237 + 3 NA intron (NM_001001331, intron 6 of 22) intron (NM_001001331, intron 6 of 22) 6515 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 536-98 chr17 74091438 74091689 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -112115 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 690-2 chr1 108835297 108835572 + 3 NA intron (NM_152763, intron 7 of 15) MIR|SINE|MIR 21660 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 325-173 chr14 72521842 72522018 + 3 NA intron (NM_001370288, intron 15 of 16) intron (NM_001370288, intron 15 of 16) 5110 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 591-74 chr2 125153299 125153609 + 3 NA Intergenic L1PA16|LINE|L1 964531 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 618-142 chr9 113042936 113043375 + 3 NA exon (NM_001282515, exon 4 of 4) exon (NM_001282515, exon 4 of 4) 13569 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 468-161 chr2 153062369 153062722 + 3 NA Intergenic Intergenic 343908 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 473-279 chr8 107766787 107767020 + 3 NA Intergenic Intergenic -268985 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 446-172 chr21 29645758 29646026 + 3 NA intron (NM_000830, intron 6 of 16) intron (NM_000830, intron 6 of 16) 49852 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 432-186 chr3 140188962 140189129 + 3 NA intron (NM_022131, intron 2 of 16) L1MD1|LINE|L1 253860 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 510-97 chr16 35844885 35845180 + 3 NA Intergenic L1MB4|LINE|L1 98480 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 770-58 chr5 35426266 35426835 + 3 NA Intergenic Intergenic -191313 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 740-62 chr4 178723124 178723410 + 3 NA Intergenic Intergenic -815331 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 250-440 chr8 109593556 109593649 + 3 NA intron (NM_001099754, intron 3 of 6) intron (NM_001099754, intron 3 of 6) 9857 NM_001363032 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 402-318 chr7 47158703 47158882 + 3 NA Intergenic L1MCa|LINE|L1 306011 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 693-71 chr3 196150136 196150525 + 3 NA intron (NR_034088, intron 2 of 2) LTR61|LTR|ERV1 7694 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 537-186 chr5 13530813 13531122 + 3 NA Intergenic Intergenic 413513 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 507-228 chr7 25582536 25582848 + 3 NA Intergenic Intergenic 80448 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 536-71 chr14 46153915 46154230 + 3 NA intron (NR_102702, intron 1 of 3) L3|LINE|CR1 89913 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 873-34 chr7 11543477 11543856 + 3 NA intron (NM_015204, intron 4 of 26) intron (NM_015204, intron 4 of 26) 288532 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 958-18 chr21 7947473 7948130 + 3 NA Intergenic (CATTC)n|Satellite|Satellite -118169 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 979-2 chr1 115540888 115541451 + 3 NA Intergenic Intergenic -100801 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 593-128 chr6 159415979 159416228 + 3 NA Intergenic L1M3c|LINE|L1 32572 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 304-329 chr3 37569720 37569907 + 3 NA intron (NM_002207, intron 15 of 27) Tigger4b|DNA|TcMar-Tigger 117672 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 346-168 chr15 97396389 97396508 + 3 NA intron (NR_120324, intron 4 of 4) intron (NR_120324, intron 4 of 4) 125363 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 460-31 chr10 32736584 32736865 + 3 NA intron (NM_001321115, intron 29 of 43) L1MCa|LINE|L1 164748 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 518-81 chr14 50790759 50791002 + 3 NA intron (NM_016350, intron 5 of 28) intron (NM_016350, intron 5 of 28) -30917 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 642-62 chr2 211683437 211683743 + 3 NA intron (NM_001042599, intron 12 of 26) L1MD1|LINE|L1 742770 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 807-31 chr2 163244840 163245260 + 3 NA Intergenic Intergenic -406283 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 500-218 chr5 5442750 5443030 + 3 NA intron (NM_015325, intron 5 of 18) intron (NM_015325, intron 5 of 18) 20213 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 676-94 chr5 8109371 8109740 + 3 NA Intergenic L1M5|LINE|L1 240407 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 256-221 chr2 161114897 161115086 + 3 NA Intergenic MamGypLTR1b|LTR|Gypsy -21964 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 629-48 chr16 74072407 74072693 + 3 NA Intergenic MIR|SINE|MIR 142971 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 421-198 chr3 188689722 188689989 + 3 NA TTS (NR_029502) TTS (NR_029502) 1074 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 755-62 chr7 36945176 36945700 + 3 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -26006 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 292-383 chr6 72394879 72395037 + 3 NA intron (NM_001350433, intron 23 of 25) L1MEi|LINE|L1 28212 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 365-428 chr9 104081578 104081798 + 3 NA non-coding (NR_121580, exon 3 of 3) non-coding (NR_121580, exon 3 of 3) 10786 NR_121580 101928550 Hs.144722 NR_121580 ENSG00000270332 SMC2-AS1 - SMC2 antisense RNA 1 (head to head) ncRNA 559-103 chr2 158419100 158419442 + 3 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 37482 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 686-31 chr18 2686657 2687046 + 3 NA intron (NM_015295, intron 5 of 47) L1MEd|LINE|L1 30964 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 454-33 chr10 88463036 88463192 + 3 NA intron (NM_018363, intron 4 of 6) MLT1C|LTR|ERVL-MaLR 120204 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 427-177 chr4 49059192 49059345 + 3 NA intron (NM_001286791, intron 15 of 15) L1MA8|LINE|L1 72626 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 554-84 chr15 100321382 100321593 + 3 NA intron (NM_139057, intron 3 of 21) L1MEd|LINE|L1 20488 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 531-53 chr13 83994642 83994901 + 3 NA Intergenic L1MC1|LINE|L1 -112297 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 558-101 chr2 116486947 116487222 + 3 NA Intergenic L1MA4A|LINE|L1 1143269 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 641-42 chr15 81723016 81723367 + 3 NA Intergenic Intergenic 322827 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 503-177 chr20 57116590 57116897 + 3 NA Intergenic Intergenic -96953 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 582-164 chr8 137987771 137988095 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 95612 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 699-60 chr20 20246619 20246982 + 3 NA intron (NM_015585, intron 19 of 26) intron (NM_015585, intron 19 of 26) -121304 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 991-21 chr5 110472429 110472921 + 3 NA intron (NM_001039763, intron 12 of 13) L1MA4|LINE|L1 41240 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 501-141 chr21 19844953 19845239 + 3 NA Intergenic Intergenic 54659 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 297-529 chrX 131409799 131410024 + 3 NA Intergenic L2a|LINE|L2 -120482 NM_001170961 3547 Hs.22111 NM_001555 ENSG00000147255 IGSF1 CHTE|IGCD1|IGDC1|INHBP|PGSF2|p120 immunoglobulin superfamily member 1 protein-coding 464-85 chr16 73323389 73323655 + 3 NA Intergenic Intergenic -63283 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 390-166 chr19 40717807 40718029 + 3 NA exon (NM_025194, exon 1 of 7) exon (NM_025194, exon 1 of 7) 806 NM_025194 80271 Hs.515415 NM_025194 ENSG00000086544 ITPKC IP3-3KC|IP3KC inositol-trisphosphate 3-kinase C protein-coding 453-209 chr5 88482667 88482935 + 3 NA Intergenic Intergenic -43711 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 1216-3 chr15 67687057 67687886 + 3 NA intron (NM_001206804, intron 13 of 21) intron (NM_001206804, intron 13 of 21) -138038 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 478-262 chr7 36913476 36913777 + 3 NA intron (NM_001206480, intron 16 of 21) LTR101_Mam|LTR|ERVL 5806 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 343-152 chr14 99164809 99164977 + 3 NA Intergenic Intergenic 107304 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 673-84 chr4 23744717 23745087 + 3 NA Intergenic Intergenic 136390 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 390-279 chr5 2604030 2604253 + 3 NA Intergenic Intergenic -108450 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 304-394 chr4 129205754 129205871 + 3 NA Intergenic L1PB4|LINE|L1 109660 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 460-75 chr14 22323420 22323608 + 3 NA Intergenic Intergenic 109239 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 659-89 chr5 42515032 42515351 + 3 NA intron (NM_001242400, intron 2 of 10) intron (NM_001242400, intron 2 of 10) -32852 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 1095-8 chr4 59392069 59392562 + 3 NA Intergenic L1P3|LINE|L1 378742 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 630 chr1 38413615 38413982 + 3 NA Intergenic L1MC3|LINE|L1 -61398 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 506-279 chr8 67920487 67920709 + 3 NA Intergenic MIRb|SINE|MIR -31448 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 809-46 chr6 134324844 134325204 + 3 NA Intergenic Intergenic -6966 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 571-23 chr10 108149994 108150236 + 3 NA Intergenic Intergenic -80822 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 462-171 chr3 15560986 15561331 + 3 NA intron (NM_001284413, intron 15 of 15) intron (NM_001284413, intron 15 of 15) -39452 NM_005677 8292 Hs.146735 NM_005677 ENSG00000206561 COLQ CMS5|EAD collagen like tail subunit of asymmetric acetylcholinesterase protein-coding 445-158 chr21 26952555 26952739 + 3 NA intron (NM_007038, intron 2 of 7) intron (NM_007038, intron 2 of 7) -1314 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 315-510 chr9 28818153 28818316 + 3 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 45472 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 328-615 chr9 118898449 118898567 + 3 NA Intergenic Intergenic 218837 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 554-96 chr17 67302451 67302830 + 3 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -57444 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 648-123 chr5 173378632 173378945 + 3 NA Intergenic AluJr|SINE|Alu 31333 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 277-61 chr10 90380436 90380580 + 3 NA Intergenic Intergenic 160297 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 273-45 chr10 32741056 32741218 + 3 NA intron (NM_001321115, intron 29 of 43) intron (NM_001321115, intron 29 of 43) 160335 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 591-75 chr2 125596005 125596349 + 3 NA Intergenic L1M5|LINE|L1 521808 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 354-81 chr11 59312789 59312970 + 3 NA Intergenic Intergenic -51580 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 471-40 chr10 127063539 127063835 + 3 NA intron (NM_001290223, intron 23 of 51) intron (NM_001290223, intron 23 of 51) 132904 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 908-13 chr18 3834518 3834928 + 3 NA intron (NM_001242761, intron 4 of 11) HAL1ME|LINE|L1 10635 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 715-21 chr15 87504450 87504914 + 3 NA Intergenic Intergenic -72247 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 377-280 chr4 22205661 22205806 + 3 NA Intergenic Intergenic 133933 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 522-73 chr14 42090974 42091297 + 3 NA Intergenic Intergenic 484279 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 150-73 chr3 196872602 196872700 + 3 NA intron (NM_152699, intron 1 of 9) MER3|DNA|hAT-Charlie 4731 NM_152699 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 403-332 chrX 43813182 43813390 + 3 NA intron (NM_000898, intron 3 of 14) MIRb|SINE|MIR 69164 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 620-87 chr3 59846478 59846956 + 3 NA intron (NM_001354590, intron 7 of 8) L1MB3|LINE|L1 -188220 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 942-11 chr17 53633951 53634342 + 3 NA Intergenic L1M8|LINE|L1 -188781 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 348-45 chr10 9258887 9259030 + 3 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -16655 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 737-28 chr16 54005221 54005646 + 3 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -33960 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 318-4 chr1 27983385 27983609 + 3 NA intron (NM_001282562, intron 15 of 16) L1ME3Cz|LINE|L1 24035 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 466-185 chr4 43256615 43256923 + 3 NA Intergenic MER52-int|LTR|ERV1 235774 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 227-235 chr3 133273843 133273975 + 3 NA intron (NM_001282865, intron 2 of 3) intron (NM_001282865, intron 2 of 3) -16788 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 509-186 chr5 36647161 36647499 + 3 NA intron (NM_004172, intron 3 of 9) intron (NM_004172, intron 3 of 9) 40724 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 357-225 chr2 180346495 180346747 + 3 NA Intergenic L1ME1|LINE|L1 -339324 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 427-148 chr22 34807876 34808093 + 3 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 189932 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 372-274 chr2 237137698 237137883 + 3 NA Intergenic L1MC4a|LINE|L1 51901 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 467-24 chr10 39051581 39051742 + 3 NA Intergenic ALR/Alpha|Satellite|centr 355065 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 669-20 chr12 133127891 133128157 + 3 NA intron (NM_001277291, intron 1 of 1) HAL1|LINE|L1 2449 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 832-14 chr2 125577911 125578269 + 3 NA Intergenic L2c|LINE|L2 539895 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 384-227 chr3 75984750 75985016 + 3 NA Intergenic Intergenic -199334 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 677-72 chr6 129778564 129778905 + 3 NA Intergenic L1MEd|LINE|L1 -68557 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 497-226 chr5 39874849 39875151 + 3 NA Intergenic Intergenic -177291 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 522-71 chr14 20200283 20200512 + 3 NA Intergenic L1ME4b|LINE|L1 3061 NM_001005503 390439 Hs.554582 NM_001005503 ENSG00000196832 OR11G2 OR14-34 olfactory receptor family 11 subfamily G member 2 protein-coding 451-13 chr1 165714848 165715129 + 3 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 16238 NR_036683 440700 Hs.568703 NR_036683 ENSG00000215838 LOC440700 - carbonic anhydrase 14 pseudogene pseudo 321-497 chr6 68041970 68042092 + 3 NA Intergenic L1MC1|LINE|L1 -13320 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 207-265 chr7 17792655 17792737 + 3 NA non-coding (NR_146932, exon 25 of 25) non-coding (NR_146932, exon 25 of 25) 147798 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 326-131 chr12 119437506 119437702 + 3 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 102875 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 426-208 chr4 66651472 66651651 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 374737 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 423-101 chr17 61118050 61118218 + 3 NA intron (NM_001330413, intron 23 of 25) L1MDa|LINE|L1 249570 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 396-69 chr11 27228657 27228861 + 3 NA Intergenic Intergenic -8646 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 552-18 chr10 55124468 55124692 + 3 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -323289 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 501-291 chrX 149257892 149258129 + 3 NA Intergenic Intergenic 247296 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 1012-3 chr10 113419799 113420444 + 3 NA Intergenic L1MEd|LINE|L1 -130710 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 465-304 chr8 134264358 134264574 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -333605 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 529-207 chr7 94836776 94837162 + 3 NA Intergenic L1M4c|LINE|L1 -70625 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 235-249 chr4 41555637 41555734 + 3 NA intron (NM_001330786, intron 1 of 22) L2a|LINE|L2 17528 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 539-62 chr13 72563376 72563649 + 3 NA Intergenic LTR40b|LTR|ERVL 164117 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 628-8 chr1 77250065 77250564 + 3 NA Intergenic L1MA5|LINE|L1 -30884 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 556-157 chr4 79770551 79770832 + 3 NA Intergenic L1MA9|LINE|L1 -56780 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 536-56 chr12 14655871 14656209 + 3 NA intron (NM_004963, intron 12 of 26) intron (NM_004963, intron 12 of 26) 40559 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 425-53 chr11 32002143 32002300 + 3 NA Intergenic Intergenic 39097 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 477-247 chr6 122504674 122505005 + 3 NA intron (NM_001270393, intron 3 of 7) intron (NM_001270393, intron 3 of 7) 32922 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 458-44 chr11 108952840 108953018 + 3 NA Intergenic L1MC3|LINE|L1 287860 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 207-98 chr16 49169500 49169573 + 3 NA Intergenic CR1_Mam|LINE|CR1 112302 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 352-397 chr5 8193182 8193394 + 3 NA Intergenic Intergenic 264276 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 283-9 chr1 68122552 68122708 + 3 NA intron (NR_040077, intron 8 of 9) intron (NR_040077, intron 8 of 9) 60980 NR_031664 100302279 NR_031664 ENSG00000221203 MIR1262 MIRN1262|hsa-mir-1262|mir-1262 microRNA 1262 ncRNA 278-253 chr21 27417027 27417198 + 3 NA Intergenic L1M3c|LINE|L1 -305267 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 538-218 chr7 4344421 4344638 + 3 NA Intergenic L1M7|LINE|L1 -209692 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 882-4 chr1 154360045 154360443 + 3 NA Intergenic Intergenic 31446 NM_001367934 57198 Hs.435700 NM_020452 ENSG00000143515 ATP8B2 ATPID ATPase phospholipid transporting 8B2 protein-coding 292-39 chr10 33925509 33925682 + 3 NA Intergenic Intergenic -152915 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 784-9 chr10 39217640 39218165 + 3 NA Intergenic ALR/Alpha|Satellite|centr 521306 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 442-310 chr9 24454856 24455093 + 3 NA Intergenic L1ME2|LINE|L1 90702 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 700-15 chr11 17624053 17624420 + 3 NA intron (NM_001277269, intron 38 of 54) L1PA13|LINE|L1 72703 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 322-251 chr2 79659417 79659612 + 3 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -10155 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 709-102 chrX 147792159 147792575 + 3 NA Intergenic Intergenic 119450 NR_024503 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 417-68 chr13 35930815 35931038 + 3 NA intron (NM_001330071, intron 4 of 16) MER57E1|LTR|ERV1 -75065 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 787-43 chr6 146143807 146144163 + 3 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 114787 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 548-187 chr5 109620179 109620481 + 3 NA Intergenic Intergenic -69036 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 436-181 chr3 34746815 34747015 + 3 NA Intergenic Intergenic 647108 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 942-29 chr4 64161547 64162016 + 3 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat 247669 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 504-7 chr1 98105394 98105718 + 3 NA Intergenic Intergenic -55863 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 450-79 chr14 35458437 35458600 + 3 NA Intergenic L1M2a|LINE|L1 -53764 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 513-24 chr10 41813681 41813973 + 3 NA Intergenic ALR/Alpha|Satellite|centr 554218 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 714-53 chr4 64242699 64243057 + 3 NA Intergenic Intergenic 166572 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 304-353 chr3 128987673 128987810 + 3 NA exon (NM_020741, exon 4 of 8) exon (NM_020741, exon 4 of 8) 4156 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 442-202 chr3 192602863 192603141 + 3 NA intron (NM_004113, intron 2 of 5) L1PA16|LINE|L1 87980 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 711-65 chr6 161014558 161014995 + 3 NA intron (NM_005922, intron 1 of 26) L1MB8|LINE|L1 23007 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 765-38 chr22 49556518 49556938 + 3 NA intron (NR_110523, intron 1 of 4) L1MEc|LINE|L1 -13262 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 377-334 chr5 122731518 122731652 + 3 NA Intergenic L1MA4A|LINE|L1 -1025 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 499-70 chr14 72065948 72066180 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 132537 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 439-63 chr12 14550235 14550425 + 3 NA intron (NM_024829, intron 2 of 10) intron (NM_024829, intron 2 of 10) -17402 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 353-528 chr8 86537338 86537560 + 3 NA intron (NM_003909, intron 6 of 16) intron (NM_003909, intron 6 of 16) 23014 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 450-323 chr9 79760750 79761016 + 3 NA Intergenic Intergenic -63647 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 369-341 chr5 155324347 155324578 + 3 NA Intergenic Intergenic 310707 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 523-41 chr10 76728084 76728403 + 3 NA Intergenic Intergenic -159801 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 760-27 chr2 3000373 3000730 + 3 NA intron (NR_110228, intron 3 of 6) AluSx1|SINE|Alu 125475 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 478-211 chr4 70270482 70270696 + 3 NA Intergenic Intergenic 27973 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 592-177 chr8 121484248 121484699 + 3 NA Intergenic Intergenic -154873 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 751-17 chr14 34420061 34420441 + 3 NA Intergenic L1ME3B|LINE|L1 41989 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 507-151 chr20 42363695 42363981 + 3 NA intron (NM_133170, intron 9 of 31) MIR|SINE|MIR -321645 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 441-139 chr2 237656082 237656267 + 3 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) 28587 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 502-288 chrX 39530884 39531202 + 3 NA Intergenic L2c|LINE|L2 -130173 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 523-77 chr14 46620133 46620406 + 3 NA Intergenic L1M2|LINE|L1 31512 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 346-179 chr16 63970538 63970725 + 3 NA Intergenic Intergenic 1151432 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 297-187 chr19 12519559 12519718 + 3 NA Intergenic L1M2|LINE|L1 31844 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 469-114 chr18 4728987 4729204 + 3 NA Intergenic Intergenic -273788 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 721-91 chr9 134987152 134987538 + 3 NA Intergenic Intergenic -69433 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 320-490 chr6 71255579 71255715 + 3 NA Intergenic Intergenic -33164 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 231-119 chr16 72536320 72536426 + 3 NA intron (NR_159372, intron 3 of 7) (TA)n|Simple_repeat|Simple_repeat 128597 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 454-292 chr7 41561904 41562222 + 3 NA Intergenic Intergenic -131856 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 603-137 chr5 151189985 151190273 + 3 NA intron (NM_015621, intron 4 of 8) L1ME1|LINE|L1 -22005 NR_160730 105378230 NR_160730 LOC105378230 - uncharacterized LOC105378230 ncRNA 488-294 chr9 105449870 105450180 + 3 NA intron (NM_001287191, intron 1 of 13) intron (NM_001287191, intron 1 of 13) 1991 NM_001330739 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 1023-8 chr12 128306391 128306890 + 3 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 12548 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 315-299 chr22 28487362 28487521 + 3 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 27572 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 474-89 chr14 106878394 106878674 + 3 NA Intergenic Intergenic -27535 NR_049827 100847062 NR_049827 ENSG00000265929 MIR5195 - microRNA 5195 ncRNA 589-151 chr7 64122360 64122648 + 3 NA Intergenic AluJb|SINE|Alu 77070 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 396-60 chr10 109745448 109745593 + 3 NA Intergenic Intergenic 177726 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 692-35 chr16 80280648 80281012 + 3 NA intron (NR_120307, intron 2 of 5) THE1B|LTR|ERVL-MaLR -259904 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 306-77 chr11 47835573 47835756 + 3 NA non-coding (NR_134636, exon 7 of 36) non-coding (NR_134636, exon 7 of 36) 12686 NR_134636 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 327-251 chr2 46283227 46283406 + 3 NA Intergenic L1MEf|LINE|L1 -14091 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 498-181 chr3 189873866 189874185 + 3 NA intron (NM_003722, intron 10 of 13) intron (NM_003722, intron 10 of 13) 44103 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 1074-8 chr2 102941339 102941932 + 3 NA Intergenic Intergenic 42794 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 1088-2 chr11 81184088 81184639 + 3 NA Intergenic Intergenic -421560 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 1076-8 chr14 66942523 66943097 + 3 NA intron (NM_020806, intron 8 of 22) MER61-int|LTR|ERV1 -246630 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 487-43 chr10 81476597 81476791 + 3 NA Intergenic L1M5|LINE|L1 -398500 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 518-191 chr4 17983854 17984068 + 3 NA intron (NR_158566, intron 1 of 5) L1PREC2|LINE|L1 37794 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 181-42 chr14 81405085 81405200 + 3 NA intron (NM_001366850, intron 2 of 7) L1M4a1|LINE|L1 22633 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 489-264 chr9 16016528 16016861 + 3 NA Intergenic Intergenic 236413 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 406-207 chr4 57452009 57452212 + 3 NA intron (NR_125907, intron 4 of 5) L1MA8|LINE|L1 26238 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 379-362 chr8 130967314 130967530 + 3 NA intron (NM_001115, intron 2 of 17) MIRb|SINE|MIR 73487 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 402-39 chr10 119351859 119352020 + 3 NA intron (NM_005308, intron 2 of 15) MIR|SINE|MIR -26033 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 472-230 chr4 100932614 100932830 + 3 NA Intergenic Intergenic -257609 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 923-28 chr9 27201695 27202124 + 3 NA intron (NM_001290077, intron 11 of 21) MIRc|SINE|MIR 80884 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 856-25 chr2 192240936 192241417 + 3 NA Intergenic L3|LINE|CR1 -46243 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 435-93 chr16 52918238 52918503 + 3 NA Intergenic L2c|LINE|L2 134503 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 438-141 chr20 4317348 4317636 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -68205 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 416-269 chr5 27768354 27768559 + 3 NA Intergenic Intergenic 296164 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 618-53 chr19 37539789 37540144 + 3 NA 3' UTR (NM_001013659, exon 8 of 8) 3' UTR (NM_001013659, exon 8 of 8) -8983 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 388-40 chr10 43651445 43651606 + 3 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -2644 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 1025-13 chr4 30418013 30418847 + 3 NA Intergenic L1MB5|LINE|L1 -301939 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 376-143 chr17 70527826 70528006 + 3 NA Intergenic Intergenic 358381 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 903-12 chr14 49515137 49515736 + 3 NA Intergenic Tigger7|DNA|TcMar-Tigger 70944 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 581-184 chr9 113730557 113730979 + 3 NA Intergenic AluJb|SINE|Alu 136639 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 663-35 chr14 53563366 53563686 + 3 NA Intergenic L1ME1|LINE|L1 384958 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 533-200 chr6 78050279 78050502 + 3 NA Intergenic L1MD|LINE|L1 397351 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 178-107 chr5 7995613 7995687 + 3 NA Intergenic Intergenic 126502 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 707-94 chr7 41485930 41486288 + 3 NA Intergenic Intergenic -207810 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 379-345 chr8 92390953 92391106 + 3 NA Intergenic Intergenic 264465 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 584-185 chrX 55853508 55853767 + 3 NA Intergenic Intergenic -54486 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 484-261 chr8 75209309 75209503 + 3 NA Intergenic Intergenic 69075 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 357-413 chr7 41761471 41761629 + 3 NA intron (NR_027118, intron 2 of 3) LTR37A|LTR|ERV1 -58460 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 533-144 chr3 170709765 170710039 + 3 NA intron (NR_135556, intron 3 of 5) Tigger1|DNA|TcMar-Tigger -123827 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 461-21 chr1 211206488 211206668 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -52699 NR_146432 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 261-281 chr4 66480136 66480270 + 3 NA Intergenic Intergenic 203379 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 576-2 chr1 62027969 62028247 + 3 NA intron (NM_001350145, intron 29 of 43) L1MB3|LINE|L1 -50678 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 680-78 chr22 47502087 47502523 + 3 NA Intergenic L1ME1|LINE|L1 -15194 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 485-292 chr8 117178315 117178541 + 3 NA Intergenic Intergenic 43433 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 193-218 chr9 126200941 126201028 + 3 NA Intergenic L1MC5|LINE|L1 74931 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 452-42 chr11 41127911 41128153 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 331604 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 407-221 chr4 62300691 62300837 + 3 NA Intergenic Intergenic -138999 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 577-161 chr5 169852477 169852846 + 3 NA intron (NR_156756, intron 27 of 52) MIRb|SINE|MIR 127834 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 515-188 chr4 103256297 103256526 + 3 NA Intergenic L1P5|LINE|L1 -58068 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 483-288 chr9 108675808 108676026 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR 180069 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 608-63 chr19 27683153 27683503 + 3 NA Intergenic ALR/Alpha|Satellite|centr -110103 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 460-153 chr2 165680239 165680435 + 3 NA 3' UTR (NM_001172173, exon 7 of 7) 3' UTR (NM_001172173, exon 7 of 7) 108001 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 1086-3 chr1 69761296 69762134 + 3 NA intron (NM_001370785, intron 3 of 26) L2c|LINE|L2 -157607 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 346-364 chr4 129267842 129267985 + 3 NA Intergenic MER103C|DNA|hAT-Charlie 171761 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 550-107 chr2 21538567 21538768 + 3 NA Intergenic L1M2|LINE|L1 171985 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 622 chr1 40465868 40466210 + 3 NA Intergenic Intergenic -11251 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 598-32 chr11 111385673 111386156 + 3 NA Intergenic AluJo|SINE|Alu -6639 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 445-177 chr3 111636075 111636320 + 3 NA intron (NR_134917, intron 10 of 14) intron (NR_134917, intron 10 of 14) -38479 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 422-229 chr5 6780747 6780952 + 3 NA Intergenic L1M5|LINE|L1 -15031 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 523-39 chr10 75023213 75023419 + 3 NA intron (NM_001370144, intron 14 of 15) intron (NM_001370144, intron 14 of 15) 1583 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 352-387 chr4 127638301 127638461 + 3 NA intron (NM_015693, intron 1 of 15) intron (NM_015693, intron 1 of 15) 5424 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 462-50 chr11 88471175 88471454 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -33262 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 794-27 chr20 51873344 51873885 + 3 NA Intergenic AluSz|SINE|Alu -10701 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 424-153 chr20 181632 181826 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity 7982 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 381-247 chr3 57419386 57419670 + 3 NA intron (NM_001366028, intron 36 of 73) intron (NM_001366028, intron 36 of 73) 124816 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 452-251 chr7 71594651 71594912 + 3 NA intron (NM_022479, intron 6 of 10) MLT1G1|LTR|ERVL-MaLR -287011 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 491-129 chr2 128329918 128330162 + 3 NA Intergenic L2a|LINE|L2 -11172 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 513-271 chr8 25729701 25729884 + 3 NA Intergenic MIR|SINE|MIR 270559 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 474-53 chr11 113507519 113507717 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -32220 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 517-138 chr2 126290335 126290542 + 3 NA Intergenic L1MCa|LINE|L1 -172453 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 845-30 chr5 152204177 152204685 + 3 NA intron (NR_109876, intron 1 of 2) L2c|LINE|L2 200848 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 433-8 chr1 164186622 164186893 + 3 NA Intergenic L1MEi|LINE|L1 -372603 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 630-54 chr2 75645318 75645586 + 3 NA Intergenic L2a|LINE|L2 -1331 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 734-39 chr2 117591250 117591595 + 3 NA Intergenic L1PB1|LINE|L1 -223269 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 703-72 chr5 55095332 55095759 + 3 NA Intergenic Intergenic -7101 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 633-15 chr10 81177047 81177432 + 3 NA Intergenic Intergenic 527442 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 405-13 chr1 169519305 169519461 + 3 NA intron (NM_000130, intron 22 of 24) Tigger12A|DNA|TcMar-Tigger -33413 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 612-106 chr4 148638653 148638978 + 3 NA Intergenic Intergenic -194117 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 429-178 chr20 58325878 58326061 + 3 NA intron (NM_020673, intron 2 of 6) L1MEf|LINE|L1 16254 NM_020673 57403 Hs.529044 NM_020673 ENSG00000124209 RAB22A - RAB22A, member RAS oncogene family protein-coding 625-8 chr1 194133848 194134211 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 829284 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 898-9 chr14 86907167 86907583 + 3 NA intron (NR_038445, intron 1 of 4) intron (NR_038445, intron 1 of 4) 1597 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 332-533 chr8 91683693 91683901 + 3 NA Intergenic L1MA4|LINE|L1 333883 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 441-129 chr2 81376991 81377242 + 3 NA Intergenic Intergenic 89830 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 335-313 chr21 23994800 23994943 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 326506 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 374-350 chr6 157525965 157526224 + 3 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) -3038 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 274-264 chr3 101038204 101038324 + 3 NA Intergenic MLT2B1|LTR|ERVL -44774 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 1005-13 chr3 55102050 55102789 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -75753 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 372-278 chr20 14428298 14428499 + 3 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -90731 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 577-131 chr4 46927079 46927478 + 3 NA 3' UTR (NM_001204266, exon 9 of 9) 3' UTR (NM_001204266, exon 9 of 9) -18033 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 437-128 chr2 34199826 34200043 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 132708 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 491-191 chr4 119929708 119929988 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -9692 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 538-172 chr4 59397820 59398023 + 3 NA Intergenic L2a|LINE|L2 384348 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 651-36 chr14 43641530 43641882 + 3 NA Intergenic L1PB2|LINE|L1 865577 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 545-150 chr3 187366297 187366517 + 3 NA Intergenic L3|LINE|CR1 -1978 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 1065-6 chr19 28902018 28902720 + 3 NA Intergenic AluSx|SINE|Alu -62762 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 1259-5 chr18 7659357 7659821 + 3 NA intron (NM_002845, intron 1 of 30) L2a|LINE|L2 92273 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 807-29 chr2 125516984 125517461 + 3 NA Intergenic L1PA17|LINE|L1 600763 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 293-164 chr18 39940635 39940789 + 3 NA Intergenic Intergenic 99003 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 493-222 chr4 30826367 30826615 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 106122 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 234-274 chr4 67349256 67349390 + 3 NA Intergenic Intergenic 72677 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 767-26 chr2 114277913 114278313 + 3 NA Intergenic Intergenic -164528 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 576-104 chr3 1856732 1857166 + 3 NA Intergenic Intergenic -241854 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 442-220 chr4 125688835 125689089 + 3 NA Intergenic L1MC3|LINE|L1 181703 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 535-98 chr16 56184109 56184334 + 3 NA intron (NR_027078, intron 2 of 4) intron (NR_027078, intron 2 of 4) 6873 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 692-21 chr12 25868508 25868902 + 3 NA Intergenic L1MB8|LINE|L1 5374 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 392-188 chr22 33252681 33252949 + 3 NA Intergenic Intergenic 144286 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 418-302 chr9 13816254 13816594 + 3 NA Intergenic Intergenic -111547 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 378-255 chr20 19229577 19229750 + 3 NA intron (NM_020689, intron 1 of 16) intron (NM_020689, intron 1 of 16) 17021 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 665-17 chr11 55912286 55912686 + 3 NA Intergenic Intergenic 2096 NM_001001960 390148 Hs.554526 NM_001001960 ENSG00000187612 OR5W2 OR5W2P|OR5W3P olfactory receptor family 5 subfamily W member 2 protein-coding 354-268 chr21 27406000 27406241 + 3 NA Intergenic Intergenic -316259 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 520-138 chr19 56585428 56585611 + 3 NA Intergenic L1M4|LINE|L1 -9777 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 358-96 chr12 83932795 83932936 + 3 NA Intergenic L1MA10|LINE|L1 979934 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 318-41 chr1 216802258 216802447 + 3 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) 3033 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 851-23 chr2 134590637 134590998 + 3 NA intron (NM_030923, intron 2 of 7) MER61E|LTR|ERV1 128183 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 636-156 chr9 10819251 10819532 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 206185 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 408-169 chr2 139843690 139843955 + 3 NA Intergenic L1MA4|LINE|L1 742863 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 459-144 chr2 108880859 108881165 + 3 NA intron (NM_001351557, intron 11 of 12) Tigger1|DNA|TcMar-Tigger 94241 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 497-129 chr2 103606590 103606842 + 3 NA Intergenic L1ME2|LINE|L1 -622287 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 708-15 chr11 112993548 112993961 + 3 NA intron (NM_181351, intron 1 of 18) HAL1|LINE|L1 -30294 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 557-195 chr8 71729509 71729833 + 3 NA Intergenic L1MC5|LINE|L1 -113452 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 730-6 chr1 224939977 224940392 + 3 NA intron (NM_001349912, intron 1 of 5) MLT1H1|LTR|ERVL-MaLR 10509 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 484-98 chr17 70914684 70914859 + 3 NA Intergenic Intergenic 287408 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 750-7 chr10 5297034 5297543 + 3 NA Intergenic MER104|DNA|TcMar-Tc2 -26052 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 834-39 chr6 62101796 62102209 + 3 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 184223 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 1091-9 chr8 46007559 46008247 + 3 NA Intergenic ALR/Alpha|Satellite|centr 609740 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 631-73 chr2 146297224 146297584 + 3 NA Intergenic MIR|SINE|MIR -289653 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 622-49 chr2 4285205 4285639 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 311261 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 541-160 chr3 113784828 113785171 + 3 NA intron (NM_001690, intron 5 of 14) intron (NM_001690, intron 5 of 14) 37964 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ARCL2D|ATP6A1|ATP6V1A1|HO68|IECEE3|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 644-10 chr10 118663659 118664015 + 3 NA Intergenic Intergenic -68189 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 1708 chr22 30064131 30065105 + 3 NA intron (NR_110541, intron 1 of 4) L1MB7|LINE|L1 15639 NR_110541 101929664 Hs.592197 NR_110541 HORMAD2-AS1 MTMR3-AS1 HORMAD2 and MTMR3 antisense RNA 1 ncRNA 710-38 chr18 43260168 43260626 + 3 NA Intergenic L1MC5a|LINE|L1 17093 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 697-76 chr8 138050562 138051002 + 3 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 32763 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 674-49 chr20 42662003 42662463 + 3 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -23250 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 552-153 chr4 60979788 60980142 + 3 NA Intergenic Intergenic 57346 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 627-65 chr21 28657873 28658238 + 3 NA Intergenic Intergenic 118737 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 509-126 chr2 176006224 176006499 + 3 NA Intergenic MER34A|LTR|ERV1 -3541 NR_130941 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 1133-3 chr12 2577185 2577788 + 3 NA intron (NM_199460, intron 13 of 49).2 intron (NM_199460, intron 13 of 49).2 94734 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 858 chr1 238235157 238235622 + 3 NA Intergenic Intergenic 250628 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 418-18 chr1 226743465 226743612 + 3 NA Intergenic L1ME1|LINE|L1 -4363 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 553-36 chr11 132216186 132216522 + 3 NA intron (NM_016522, intron 3 of 6) intron (NM_016522, intron 3 of 6) -67948 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 1052-25 chr8 138385912 138386427 + 3 NA intron (NM_001362965, intron 1 of 19) AluSq2|SINE|Alu 111092 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 853-11 chr17 61619397 61619988 + 3 NA Intergenic L1MEf|LINE|L1 -28473 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 458-57 chr13 38148530 38148758 + 3 NA Intergenic Intergenic -5412 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 510-257 chr7 31650683 31651003 + 3 NA intron (NM_194300, intron 10 of 12) intron (NM_194300, intron 10 of 12) -36174 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 392-287 chr6 139701848 139702069 + 3 NA Intergenic Intergenic -69115 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 464-46 chr12 125824939 125825224 + 3 NA Intergenic Intergenic 158293 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 362-303 chr4 61820921 61821088 + 3 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 340761 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 449-88 chr15 68381243 68381424 + 3 NA intron (NM_001004439, intron 2 of 29) intron (NM_001004439, intron 2 of 29) 50830 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 408-85 chr12 67560410 67560613 + 3 NA intron (NR_103861, intron 2 of 2) L1ME4b|LINE|L1 40429 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LINC02408 - long intergenic non-protein coding RNA 2408 ncRNA 735-43 chr2 86695814 86696196 + 3 NA intron (NM_001198954, intron 1 of 7) L1ME1|LINE|L1 -24286 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 525-25 chr10 51185868 51186045 + 3 NA intron (NM_001098512, intron 2 of 17) L1ME4a|LINE|L1 111469 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 509-228 chr7 13513241 13513441 + 3 NA Intergenic L1PREC2|LINE|L1 473173 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 645-13 chr11 21207636 21208089 + 3 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 538276 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 576-66 chr17 67433496 67433825 + 3 NA intron (NM_181671, intron 1 of 9) AluJr|SINE|Alu -37829 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 585-90 chr20 52381871 52382077 + 3 NA Intergenic MIR|SINE|MIR -189989 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 399-263 chr6 35699045 35699261 + 3 NA intron (NM_001145775, intron 2 of 11) MLT1G1|LTR|ERVL-MaLR -10211 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 775-42 chr2 76564333 76564832 + 3 NA Intergenic Intergenic -421383 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 607-113 chr5 7640331 7640700 + 3 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 210618 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 872-8 chr10 24055249 24055651 + 3 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -153341 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 424-92 chr16 63426860 63427108 + 3 NA Intergenic L1MC3|LINE|L1 -1390546 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 752-61 chr5 60016584 60016960 + 3 NA intron (NM_001349243, intron 2 of 16) Tigger1|DNA|TcMar-Tigger -123046 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 414-189 chr20 54729476 54729677 + 3 NA Intergenic LTR16C|LTR|ERVL 253983 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 504-84 chr15 92333290 92333506 + 3 NA Intergenic Intergenic -60483 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 831 chr1 40329485 40329955 + 3 NA Intergenic L1MD2|LINE|L1 -12434 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 776-27 chr2 121727686 121728105 + 3 NA non-coding (NR_037857, exon 4 of 4) non-coding (NR_037857, exon 4 of 4) 8980 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 522-230 chr7 4529163 4529482 + 3 NA Intergenic Intergenic -152973 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 455-76 chr14 87645100 87645264 + 3 NA intron (NR_146551, intron 1 of 2) L1MA9|LINE|L1 10112 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 433-269 chr8 14004654 14004934 + 3 NA Intergenic Intergenic 375104 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 766-40 chr2 229544252 229544661 + 3 NA intron (NM_139072, intron 5 of 12) intron (NM_139072, intron 5 of 12) 170099 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 461-180 chr3 178935530 178935810 + 3 NA Intergenic L1MA7|LINE|L1 -75265 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 540-49 chr12 37973398 37973669 + 3 NA Intergenic ALR/Alpha|Satellite|centr -343241 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 804-9 chr11 15676656 15677129 + 3 NA intron (NM_001293172, intron 1 of 2) L1ME1|LINE|L1 33007 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 240-2 chr1 15278277 15278454 + 3 NA intron (NM_052929, intron 3 of 30) intron (NM_052929, intron 3 of 30) 31140 NM_052929 114827 Hs.659997 NM_052929 ENSG00000142621 FHAD1 - forkhead associated phosphopeptide binding domain 1 protein-coding 928-31 chr7 98098438 98098939 + 3 NA Intergenic L1MB7|LINE|L1 -8174 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 940-7 chr14 81868453 81869093 + 3 NA Intergenic Intergenic -125635 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 493-16 chr1 164519590 164519863 + 3 NA Intergenic Intergenic -39634 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 440-206 chr5 109613047 109613301 + 3 NA Intergenic L3|LINE|CR1 -76192 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 563-57 chr14 87580843 87581107 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 74319 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 411-173 chr3 12567936 12568100 + 3 NA intron (NM_001271707, intron 1 of 6) MER47A|DNA|TcMar-Tigger 10931 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 655-122 chr8 63191589 63191949 + 3 NA intron (NM_152758, intron 4 of 4) L1ME1|LINE|L1 22766 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 522-40 chr11 28800070 28800385 + 3 NA Intergenic Intergenic -322679 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 925-35 chr8 128956129 128956614 + 3 NA intron (NR_145483, intron 2 of 3) AluJb|SINE|Alu 9630 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 814-17 chr12 131537748 131538216 + 3 NA Intergenic Intergenic 110139 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 490-302 chr8 126967502 126967710 + 3 NA Intergenic MIRb|SINE|MIR -45548 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 444-132 chr2 214506417 214506592 + 3 NA intron (NM_001080500, intron 3 of 3) L1ME4a|LINE|L1 -3678 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 464-186 chr4 93013388 93013663 + 3 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 709126 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 750-22 chr16 65936693 65937215 + 3 NA Intergenic LTR16A|LTR|ERVL -360654 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 621-120 chr7 93142125 93142395 + 3 NA intron (NM_001303500, intron 3 of 3) L2a|LINE|L2 6125 NM_001303498 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 681-65 chr5 75006304 75006635 + 3 NA Intergenic AluJo|SINE|Alu 46089 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 315-263 chr2 194938359 194938533 + 3 NA Intergenic Intergenic 207851 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 576-70 chr18 3495572 3495906 + 3 NA TTS (NM_001242764) TTS (NM_001242764) 29489 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 468-335 chr9 78089276 78089553 + 3 NA Intergenic Intergenic -57603 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 1055-11 chr3 104577750 104578459 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -788609 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 480-179 chr21 30980915 30981116 + 3 NA Intergenic Intergenic 57461 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 365-288 chr4 58854560 58854704 + 3 NA Intergenic ALR/Alpha|Satellite|centr -129650 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 379-132 chr18 53277260 53277442 + 3 NA intron (NM_005215, intron 12 of 28) AluSx|SINE|Alu 40250 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 410-250 chr5 127582692 127583009 + 3 NA Intergenic L1MD3|LINE|L1 65210 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 552-167 chr5 15574218 15574536 + 3 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 40625 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 347-192 chr19 44495938 44496102 + 3 NA intron (NM_001288760, intron 3 of 6) intron (NM_001288760, intron 3 of 6) 4502 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 758-51 chr22 37436147 37436452 + 3 NA Intergenic L1MD3|LINE|L1 -8820 NM_052906 114794 Hs.344170 NM_052906 ENSG00000166897 ELFN2 LRRC62|PPP1R29 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding 498-280 chr8 120102893 120103095 + 3 NA Intergenic L1MC5|LINE|L1 -22108 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 453-29 chr10 82936781 82937019 + 3 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -703980 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 514-211 chr4 124476728 124477058 + 3 NA Intergenic MLT2A1|LTR|ERVL 81541 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 535-104 chr17 26653611 26653945 + 3 NA Intergenic ALR/Alpha|Satellite|centr 435463 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 448-309 chrX 125166777 125167052 + 3 NA Intergenic Intergenic -152957 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 623-12 chr10 57647260 57647726 + 3 NA Intergenic Intergenic -342934 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 558-217 chr8 108283491 108283824 + 3 NA Intergenic L2b|LINE|L2 -34940 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 593-59 chr17 34748043 34748408 + 3 NA Intergenic L1ME1|LINE|L1 167476 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 564-51 chr14 53731046 53731304 + 3 NA Intergenic Intergenic 217309 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 467-210 chr4 127456646 127456991 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -176139 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 497-34 chr11 5930254 5930472 + 3 NA Intergenic HERV-Fc2-int|LTR|ERV1 -16984 NM_001003443 390083 Hs.553741 NM_001003443 ENSG00000184478 OR56A3 OR56A2P|OR56A3P|OR56A6 olfactory receptor family 56 subfamily A member 3 protein-coding 409-165 chr20 6677944 6678181 + 3 NA Intergenic Intergenic 58074 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 829-16 chr15 60984707 60985144 + 3 NA intron (NM_134261, intron 1 of 10) MER5C|DNA|hAT-Charlie 244377 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 501-142 chr21 24584477 24584735 + 3 NA Intergenic Intergenic 155866 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 660-82 chr5 57906133 57906545 + 3 NA Intergenic Intergenic -7177 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 253-310 chr4 175724985 175725177 + 3 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 62595 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 686-11 chr10 66897690 66898156 + 3 NA intron (NR_111911, intron 5 of 6) L1MC5a|LINE|L1 -28113 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 375-4 chr1 36743164 36743337 + 3 NA Intergenic MamGypLTR3a|LTR|Gypsy -259936 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 632-116 chr8 75462825 75463239 + 3 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) 55383 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 305-356 chr3 103651388 103651557 + 3 NA Intergenic Intergenic -127356 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 743-53 chr3 110294569 110295002 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 691957 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 1387-3 chr14 57766126 57766628 + 3 NA intron (NR_159373, intron 1 of 10) LTR104_Mam|LTR|Gypsy 98622 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 1122-7 chr17 72627754 72628178 + 3 NA intron (NR_033876, intron 2 of 4) HAL1|LINE|L1 12506 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 379-54 chr11 26391608 26391785 + 3 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 59566 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 351-90 chr12 25862343 25862494 + 3 NA Intergenic L1ME3G|LINE|L1 11661 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 546-121 chr20 3951585 3951802 + 3 NA intron (NM_001134337, intron 2 of 5) L1MC4a|LINE|L1 -34130 NR_031722 100302282 NR_031722 ENSG00000283320 MIR103B2 MIR103-2-AS|MIR103-2AS|MIRN103-2AS|hsa-mir-103-2-as microRNA 103b-2 ncRNA 408-145 chr19 12507462 12507773 + 3 NA Intergenic Intergenic -22801 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 640-16 chr10 83413758 83414060 + 3 NA Intergenic Intergenic 263180 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 587-84 chr2 220059526 220059797 + 3 NA Intergenic Intergenic -153096 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 600-33 chr14 55470833 55471294 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -30518 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 376-309 chr5 19657921 19658175 + 3 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 228224 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 337-324 chr21 29671445 29671588 + 3 NA intron (NM_000830, intron 4 of 16) intron (NM_000830, intron 4 of 16) 75476 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 367-160 chr17 27275080 27275267 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 18823 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 650-131 chr8 136796816 136797187 + 3 NA intron (NR_147196, intron 3 of 5) intron (NR_147196, intron 3 of 5) 266203 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 573-176 chr7 8618890 8619242 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 185457 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 428-191 chr3 125463012 125463203 + 3 NA intron (NM_003794, intron 9 of 13) intron (NM_003794, intron 9 of 13) 57095 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 461-40 chr10 92835038 92835204 + 3 NA intron (NM_001319194, intron 2 of 22) intron (NM_001319194, intron 2 of 22) 4013 NM_001319194 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 929-10 chr15 27176801 27177318 + 3 NA intron (NM_001270873, intron 3 of 5) LTR8B|LTR|ERV1 -15740 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 417-80 chr14 49415785 49416009 + 3 NA Intergenic Intergenic 170483 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 662-63 chr3 116441678 116442113 + 3 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 3592 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 447-64 chr13 67008038 67008283 + 3 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 17274 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 630-90 chr3 138308437 138308803 + 3 NA intron (NM_001349018, intron 6 of 10) intron (NM_001349018, intron 6 of 10) 21231 NM_001349023 347736 Hs.660992 NM_178130 ENSG00000181322 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 1011-2 chr1 90596175 90596809 + 3 NA Intergenic L1MEc|LINE|L1 -61258 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 467-144 chr2 181746709 181746932 + 3 NA Intergenic Intergenic -66155 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 477-35 chr10 32268041 32268214 + 3 NA 3' UTR (NM_025209, exon 15 of 15) 3' UTR (NM_025209, exon 15 of 15) 79031 NM_025209 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 625-25 chr12 33946407 33946797 + 3 NA Intergenic Intergenic -75894 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 913-37 chr7 32307154 32307672 + 3 NA intron (NM_001322059, intron 1 of 17) MLT1J2|LTR|ERVL-MaLR -8085 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 540-176 chr5 104823981 104824247 + 3 NA Intergenic (CATATTA)n|Simple_repeat|Simple_repeat -275360 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 397-5 chr1 65922322 65922539 + 3 NA intron (NM_002600, intron 3 of 16) LTR79|LTR|ERVL 9185 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 485-182 chr3 71471520 71471681 + 3 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) 70489 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 431-105 chr17 71243819 71244059 + 3 NA Intergenic MIR|SINE|MIR -41760 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 692-52 chr2 163774021 163774280 + 3 NA Intergenic Intergenic -38142 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 570-181 chr7 54943922 54944232 + 3 NA Intergenic L1MEc|LINE|L1 -74940 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 425-121 chr18 75835227 75835480 + 3 NA Intergenic Intergenic -122950 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 198-200 chr5 112329922 112329991 + 3 NA intron (NM_001347887, intron 1 of 23) MIRc|SINE|MIR 89321 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 531-112 chr2 75964833 75965032 + 3 NA Intergenic MLT-int|LTR|ERVL-MaLR -254017 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 685-78 chr5 124211972 124212402 + 3 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 226333 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 631-127 chr8 136912929 136913234 + 3 NA Intergenic MER41-int|LTR|ERV1 382283 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 516-38 chr11 106639219 106639522 + 3 NA Intergenic MER57A-int|LTR|ERV1 379106 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 598-34 chr12 10402248 10402643 + 3 NA intron (NM_001199805, intron 4 of 12) L1PREC2|LINE|L1 7312 NM_013431 8302 Hs.721094 NM_013431 ENSG00000183542 KLRC4 NKG2-F|NKG2F killer cell lectin like receptor C4 protein-coding 666-90 chr5 15889372 15889732 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -45630 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 251-161 chr2 28590188 28590300 + 3 NA intron (NR_138141, intron 9 of 35) intron (NR_138141, intron 9 of 35) 23887 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 432-150 chr2 215085188 215085348 + 3 NA intron (NR_103740, intron 2 of 54) intron (NR_103740, intron 2 of 54) -53182 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 492-22 chr10 42305820 42306019 + 3 NA Intergenic Intergenic 62126 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 570-15 chr1 230772529 230772840 + 3 NA intron (NM_016452, intron 7 of 18) FRAM|SINE|Alu 25296 NM_006615 10753 Hs.498021 NM_006615 ENSG00000135773 CAPN9 GC36|nCL-4 calpain 9 protein-coding 867-7 chr1 199497169 199497618 + 3 NA Intergenic L1M2|LINE|L1 348795 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 586-9 chr1 102996208 102996467 + 3 NA intron (NM_001854, intron 26 of 66) intron (NM_001854, intron 26 of 66) 112159 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 493-65 chr12 124212026 124212230 + 3 NA intron (NM_001347902, intron 3 of 4) AluY|SINE|Alu -77036 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 535-222 chr7 5688500 5688726 + 3 NA intron (NM_207111, intron 13 of 16) intron (NM_207111, intron 13 of 16) -8152 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 823-20 chr2 226450804 226451356 + 3 NA Intergenic Intergenic 207713 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 318-60 chr10 41783344 41783521 + 3 NA Intergenic ALR/Alpha|Satellite|centr 584613 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 348-229 chr2 88288480 88288731 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 115466 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 464-60 chr14 49135747 49135978 + 3 NA Intergenic Intergenic 450518 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 480-6 chr1 57258232 57258539 + 3 NA intron (NM_001353980, intron 5 of 5) intron (NM_001353980, intron 5 of 5) 164727 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 459-176 chr3 15607867 15608055 + 3 NA intron (NM_001281725, intron 1 of 3) intron (NM_001281725, intron 1 of 3) 5992 NM_001281725 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 498-17 chr1 213278340 213278543 + 3 NA Intergenic Intergenic 227200 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 985-2 chr1 188814980 188815525 + 3 NA Intergenic L1M5|LINE|L1 1371624 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 472-65 chr12 81062537 81062756 + 3 NA Intergenic Intergenic -15433 NM_001330242 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 477-249 chr6 163504757 163504944 + 3 NA intron (NM_206853, intron 3 of 6) L1ME3Cz|LINE|L1 90132 NM_006775 9444 Hs.510324 NM_006775 ENSG00000112531 QKI Hqk|QK|QK1|QK3|hqkI QKI, KH domain containing RNA binding protein-coding 503-33 chr10 61482576 61482897 + 3 NA intron (NR_120645, intron 2 of 4) MER39|LTR|ERV1 2695 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 580-93 chr2 180633023 180633338 + 3 NA Intergenic L1MC5|LINE|L1 -58924 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 650-80 chr3 158938584 158938947 + 3 NA Intergenic L1PB1|LINE|L1 -130487 NM_001197113 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 610-107 chr22 47940912 47941132 + 3 NA Intergenic Intergenic 309348 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 705-10 chr10 76099947 76100336 + 3 NA intron (NM_001305581, intron 5 of 6) L1MCc|LINE|L1 317380 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 670-121 chr8 99958627 99958980 + 3 NA Intergenic L1MCa|LINE|L1 -45779 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 539-29 chr10 66627377 66627732 + 3 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -298482 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 537-258 chr8 117057795 117057985 + 3 NA intron (NM_001172815, intron 2 of 10) L1MA9|LINE|L1 -77105 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 175-28 chr10 133524794 133524862 + 3 NA Intergenic L1ME3G|LINE|L1 -2535 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 525-121 chr2 98423123 98423483 + 3 NA Intergenic L1M4b|LINE|L1 -21284 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 607-153 chr9 18173835 18174284 + 3 NA Intergenic Intergenic -300094 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 298-394 chr6 44437642 44437772 + 3 NA intron (NM_001253, intron 14 of 15) intron (NM_001253, intron 14 of 15) 2066 NR_039785 100616352 NR_039785 ENSG00000266619 MIR4642 - microRNA 4642 ncRNA 413-80 chr14 33900517 33900750 + 3 NA Intergenic Intergenic 50441 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 258-261 chr3 79171196 79171317 + 3 NA intron (NM_002941, intron 2 of 30) MER63C|DNA|hAT-Blackjack -151797 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 617-66 chr2 129341037 129341384 + 3 NA Intergenic L1M4a2|LINE|L1 -67319 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 630-107 chr5 82698101 82698408 + 3 NA Intergenic Intergenic -141901 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 578-43 chr11 114962875 114963332 + 3 NA Intergenic L2c|LINE|L2 284576 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 479-24 chr10 53343854 53344052 + 3 NA Intergenic L1MCc|LINE|L1 -572253 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 240-232 chr2 141621385 141621493 + 3 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 510262 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 217-221 chr3 41665507 41665621 + 3 NA intron (NR_136342, intron 27 of 34) intron (NR_136342, intron 27 of 34) 296539 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 312-299 chr20 56144139 56144326 + 3 NA Intergenic Intergenic -104500 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 463-176 chr22 43710687 43710878 + 3 NA intron (NM_198856, intron 8 of 29) L1MC5|LINE|L1 101523 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 495-253 chr8 87786914 87787200 + 3 NA Intergenic Intergenic 86958 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 346-443 chr6 141004103 141004313 + 3 NA Intergenic Intergenic 320394 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 876-6 chr10 85749872 85750376 + 3 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 172393 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 802-59 chr6 22173837 22174448 + 3 NA intron (NR_015410, intron 10 of 11) THE1D-int|LTR|ERVL-MaLR -26949 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 705-5 chr10 35704464 35704917 + 3 NA Intergenic Intergenic -63256 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 353-550 chr9 23495474 23495610 + 3 NA Intergenic Intergenic 176857 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 1016-4 chr14 33544850 33545494 + 3 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -163765 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 274-368 chr8 2998798 2998984 + 3 NA intron (NM_033225, intron 53 of 69) intron (NM_033225, intron 53 of 69) -270440 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 819-4 chr10 115670279 115670647 + 3 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 524326 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 677-15 chr10 66054926 66055434 + 3 NA intron (NM_001127384, intron 15 of 17) L1MA5|LINE|L1 483755 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 416-206 chr20 46470709 46470992 + 3 NA Intergenic L1ME3B|LINE|L1 -5558 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 731-23 chr13 39088238 39088697 + 3 NA Intergenic Intergenic 50011 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 792-49 chr5 126049207 126049554 + 3 NA Intergenic Intergenic -130197 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 415-79 chr15 37552355 37552530 + 3 NA Intergenic MIRb|SINE|MIR -382165 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 277-134 chr16 27874618 27874791 + 3 NA intron (NM_001323901, intron 2 of 5) MER21C|LTR|ERVL 13453 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 420-130 chr2 39104758 39105063 + 3 NA intron (NM_005633, intron 1 of 22) L1MB4|LINE|L1 15553 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 505-198 chr3 135374619 135374836 + 3 NA Intergenic L2|LINE|L2 579467 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 486-243 chr5 72727222 72727491 + 3 NA Intergenic Intergenic -66687 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 494-199 chr4 36527954 36528134 + 3 NA intron (NR_149124, intron 3 of 4) L1MA4|LINE|L1 -101616 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 410-63 chr12 2592018 2592197 + 3 NA intron (NM_199460, intron 18 of 49).2 MLT1C|LTR|ERVL-MaLR 80113 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 449-259 chr7 104746472 104746709 + 3 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 57502 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 314-381 chr3 99300420 99300626 + 3 NA Intergenic L1MCa|LINE|L1 -338071 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 678-36 chr16 86165235 86165606 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -30761 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 1040-8 chr17 70782251 70782921 + 3 NA Intergenic Intergenic 419593 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 747-27 chr17 68959788 68960084 + 3 NA Intergenic L1PA16|LINE|L1 -4544 NM_007168 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 641-95 chr5 114694994 114695355 + 3 NA intron (NR_130785, intron 1 of 12) L1MD|LINE|L1 78239 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 546-54 chr12 64356530 64356764 + 3 NA intron (NM_001099676, intron 1 of 10) LTR10A|LTR|ERV1 34111 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 387-181 chr2 123414909 123415209 + 3 NA Intergenic L1MD1|LINE|L1 -341578 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 499-77 chr15 86555203 86555466 + 3 NA intron (NM_152336, intron 21 of 24) intron (NM_152336, intron 21 of 24) -238366 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 575-7 chr1 70667559 70667874 + 3 NA Intergenic Intergenic -38737 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 531-261 chr9 24476763 24477043 + 3 NA Intergenic Intergenic 68773 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 378-364 chr6 18980427 18980655 + 3 NA Intergenic Intergenic 199939 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 662-80 chr5 169417472 169417766 + 3 NA Intergenic Intergenic -116480 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 333-570 chr8 83964648 83964784 + 3 NA Intergenic Intergenic -218071 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 473-150 chr2 203730997 203731213 + 3 NA intron (NM_001243077, intron 3 of 3) intron (NM_001243077, intron 3 of 3) 24466 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 448-18 chr1 182485814 182486046 + 3 NA intron (NM_001366934, intron 7 of 22) MER58B|DNA|hAT-Charlie 35784 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 506-73 chr13 55287785 55288026 + 3 NA Intergenic Intergenic 113451 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 450-197 chr3 84322305 84322565 + 3 NA Intergenic Intergenic 547140 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 402-104 chr16 62804066 62804216 + 3 NA Intergenic L1MA5|LINE|L1 -767703 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 508-143 chr3 36747297 36747531 + 3 NA Intergenic MER34A|LTR|ERV1 -7553 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 512-155 chr22 26241745 26241996 + 3 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 72396 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 504-262 chr8 118164615 118164840 + 3 NA intron (NR_146234, intron 4 of 5) MIRb|SINE|MIR -52908 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 1066-3 chr1 244512351 244512973 + 3 NA intron (NM_001130957, intron 7 of 21) L1MA4|LINE|L1 51291 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 524-90 chr17 61216179 61216398 + 3 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 151416 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 445 chr1 34353711 34354071 + 3 NA Intergenic L1ME4a|LINE|L1 176984 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 380-10 chr1 56223819 56223961 + 3 NA Intergenic MIR|SINE|MIR -191073 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 473-259 chr7 33442403 33442691 + 3 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 312983 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 385-101 chr14 68448882 68449065 + 3 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 179814 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 636-115 chr5 117193486 117193853 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -221843 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 656-94 chr5 44289747 44290114 + 3 NA Intergenic Intergenic -98802 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 365-197 chr2 100117483 100117721 + 3 NA intron (NM_002285, intron 1 of 23) L1MEg|LINE|L1 -12019 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 926-27 chr8 10312487 10313059 + 3 NA intron (NM_001199729, intron 5 of 6) L1ME3B|LINE|L1 -161792 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 499-44 chr11 60430278 60430534 + 3 NA intron (NM_023945, intron 1 of 4) intron (NM_023945, intron 1 of 4) 834 NM_023945 64232 Hs.178066 NM_023945 ENSG00000166930 MS4A5 CD20-L2|CD20L2|TETM4 membrane spanning 4-domains A5 protein-coding 553-237 chr8 120490876 120491226 + 3 NA intron (NM_022045, intron 13 of 21) UCON44|Unknown|Unknown 45632 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 677-47 chr2 204254189 204254576 + 3 NA Intergenic MIR|SINE|MIR -291093 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1063-22 chr8 79226675 79227282 + 3 NA Intergenic L1MA1|LINE|L1 -105210 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 670-5 chr1 160648028 160648381 + 3 NA promoter-TSS (NM_003037) promoter-TSS (NM_003037) -893 NM_003037 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 411-291 chr8 102938471 102938626 + 3 NA intron (NR_126339, intron 2 of 2) MER39B|LTR|ERV1 74277 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 869-14 chr11 94101371 94101775 + 3 NA intron (NM_001098672, intron 14 of 19) L1MC1|LINE|L1 -27268 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 535-134 chr2 126999903 127000175 + 3 NA Intergenic L1M5|LINE|L1 82026 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 565-2 chr1 40516592 40516856 + 3 NA TTS (NM_022774) TTS (NM_022774) 8005 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 909-24 chr6 62673348 62673949 + 3 NA Intergenic Intergenic -387421 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 438-222 chr5 95109328 95109518 + 3 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -27557 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 610-76 chr19 9285828 9286135 + 3 NA Intergenic AluJr|SINE|Alu 23857 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 408-260 chr5 23029532 23029758 + 3 NA Intergenic L2|LINE|L2 -176301 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 817-29 chr20 56083578 56083998 + 3 NA Intergenic L1MEc|LINE|L1 -78269 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 380-404 chr8 117556675 117556885 + 3 NA Intergenic LTR82A|LTR|ERVL 36067 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 379-219 chr3 115550024 115550184 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -73406 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 924-26 chr2 98287043 98287618 + 3 NA intron (NM_001345864, intron 16 of 21) L1MB7|LINE|L1 -58825 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 385-299 chr5 60111182 60111426 + 3 NA intron (NM_001349243, intron 2 of 16) L1MA5|LINE|L1 -217578 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 486-281 chr7 51929230 51929409 + 3 NA Intergenic Intergenic -536063 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 523-97 chr16 56027343 56027564 + 3 NA Intergenic Intergenic -71422 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 795-5 chr1 102063679 102064057 + 3 NA Intergenic L1PA11|LINE|L1 -66634 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 1655-3 chr18 2193002 2193931 + 3 NA Intergenic L1MEg|LINE|L1 378039 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 624-12 chr10 16703808 16704190 + 3 NA intron (NM_152724, intron 6 of 7) MER5A|DNA|hAT-Charlie 113425 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 417-41 chr10 80660320 80660571 + 3 NA Intergenic LTR16A2|LTR|ERVL 10648 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 583-144 chr6 2520137 2520446 + 3 NA Intergenic Intergenic -114209 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 1026-19 chr5 87882152 87882808 + 3 NA Intergenic Intergenic 220438 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 839-4 chr10 117767246 117767782 + 3 NA Intergenic AluSz6|SINE|Alu -222446 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 1158-2 chr10 80298475 80299138 + 3 NA Intergenic Intergenic -9148 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 1205 chr10 32753429 32754016 + 3 NA intron (NM_001321115, intron 29 of 43) intron (NM_001321115, intron 29 of 43) 147750 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 691-5 chr1 229894917 229895281 + 3 NA Intergenic Intergenic -1191 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 559-75 chr17 65832630 65832954 + 3 NA intron (NM_001353129, intron 21 of 26) L1PA14|LINE|L1 -6249 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 513-2 chr1 37698459 37698891 + 3 NA intron (NM_001256875, intron 3 of 9) L1ME3F|LINE|L1 6159 NM_001256875 55143 Hs.524571 NM_018101 ENSG00000134690 CDCA8 BOR|BOREALIN|DasraB|MESRGP cell division cycle associated 8 protein-coding 325-440 chr5 51296839 51297023 + 3 NA Intergenic Intergenic 86401 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 673-3 chr1 79862275 79862680 + 3 NA Intergenic L2b|LINE|L2 -673278 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 802-66 chr7 86728178 86728700 + 3 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 84525 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 971-22 chrX 99523280 99523941 + 3 NA Intergenic L1PB3|LINE|L1 886663 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 936-21 chr3 71608956 71609368 + 3 NA Intergenic Intergenic -25173 NM_001244810 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 528-191 chr4 172877994 172878182 + 3 NA intron (NM_001034845, intron 7 of 12) intron (NM_001034845, intron 7 of 12) -151210 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 463-135 chr2 36193052 36193354 + 3 NA Intergenic Intergenic 162367 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 571-103 chr3 36254072 36254418 + 3 NA Intergenic L1PA10|LINE|L1 -126242 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 772-41 chr5 26012469 26012786 + 3 NA Intergenic Intergenic 821674 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 425-283 chr7 51465837 51466022 + 3 NA Intergenic Intergenic -72673 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 795-42 chr5 13389793 13390269 + 3 NA Intergenic L1PA16|LINE|L1 -357145 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 686-47 chr2 129538399 129538825 + 3 NA Intergenic L1M4|LINE|L1 -264721 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 414-207 chr3 60988511 60988740 + 3 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 262827 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 337-536 chr8 77810008 77810145 + 3 NA Intergenic L1PA16|LINE|L1 359379 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 800-39 chr3 85540320 85540851 + 3 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 35526 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 497-98 chr18 1262910 1263175 + 3 NA Intergenic L1ME1|LINE|L1 96587 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 632-6 chr1 157023186 157023600 + 3 NA intron (NM_014784, intron 1 of 39) L1MB7|LINE|L1 22349 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 395-164 chr2 53108423 53108670 + 3 NA Intergenic Intergenic -405931 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 418-109 chr2 29516574 29516757 + 3 NA intron (NM_004304, intron 4 of 28) MIR|SINE|MIR -41288 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 462-57 chr12 34543443 34543725 + 3 NA Intergenic ALR/Alpha|Satellite|centr 521088 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 533-46 chr13 74705600 74705889 + 3 NA Intergenic Intergenic 152901 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 1793 chr16 73437514 73438325 + 3 NA Intergenic Intergenic 51114 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 562-82 chr17 77170630 77170876 + 3 NA intron (NM_001143999, intron 3 of 16) HERVIP10B3-int|LTR|ERV1 -14460 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 904-8 chr11 131361589 131361947 + 3 NA Intergenic Intergenic -8847 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 453-176 chr4 35948497 35948694 + 3 NA Intergenic Intergenic 295344 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 852-31 chr20 54054663 54055109 + 3 NA intron (NM_001366297, intron 3 of 8) (AT)n|Simple_repeat|Simple_repeat 4134 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 484-262 chr8 79209714 79210063 + 3 NA Intergenic L1ME3B|LINE|L1 -122300 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 868-37 chr7 44315445 44316018 + 3 NA intron (NM_172081, intron 1 of 18) L1MB4|LINE|L1 9863 NM_172084 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 441-51 chr12 11684386 11684642 + 3 NA intron (NM_001987, intron 1 of 7) L1MC5|LINE|L1 34660 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 1027-10 chr21_GL383578v2_alt 27186 27660 + 3 NA NA L1ME4b|LINE|L1 NA NA 658-12 chr10 17569072 17569427 + 3 NA Intergenic Intergenic 48125 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 405-131 chr2 28178362 28178584 + 3 NA intron (NR_120504, intron 1 of 2) L1MA4A|LINE|L1 28488 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 524-139 chr21 31917936 31918231 + 3 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 45063 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 698-83 chr8 82166772 82167153 + 3 NA Intergenic Intergenic -324676 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 462-78 chr14 45365910 45366092 + 3 NA Intergenic Tigger12|DNA|TcMar-Tigger -112799 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 464-269 chr9 102906046 102906309 + 3 NA Intergenic L1PA8|LINE|L1 -89156 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 211-179 chr3 7267704 7267788 + 3 NA intron (NM_000844, intron 2 of 9) LOR1b|LTR|ERV1 267538 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 629-58 chr19 33916902 33917388 + 3 NA Intergenic L1MC4|LINE|L1 120275 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 432-33 chr10 65975442 65975615 + 3 NA intron (NM_001127384, intron 16 of 17) MIRb|SINE|MIR 404103 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 495-272 chrX 23267708 23267962 + 3 NA intron (NR_073010, intron 2 of 11) L1ME3Cz|LINE|L1 25311 NR_073010 100873065 Hs.628459 NR_046436 PTCHD1-AS DDX53-AS1|PTCHD1AS1|PTCHD1AS2 PTCHD1 antisense RNA (head to head) ncRNA 474-61 chr12 24140955 24141162 + 3 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -71363 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 771-62 chr4 113421208 113421657 + 3 NA Intergenic L1MEc|LINE|L1 128593 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 353-70 chr10 96453503 96453754 + 3 NA intron (NM_012465, intron 2 of 20) L1ME4a|LINE|L1 60298 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 1062-8 chr2 79421539 79421990 + 3 NA Intergenic Intergenic 79080 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 274-324 chr5 157294335 157294462 + 3 NA intron (NM_001291721, intron 3 of 29) intron (NM_001291721, intron 3 of 29) 25074 NM_014376 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 467-62 chr12 12544941 12545233 + 3 NA intron (NM_030640, intron 1 of 6).2 L1ME3A|LINE|L1 17776 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 1261-5 chr4 62825422 62826172 + 3 NA Intergenic Intergenic -664032 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 557-149 chr5 3434847 3435108 + 3 NA intron (NR_033898, intron 2 of 4) L2b|LINE|L2 -17839 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 487-141 chr2 57555096 57555407 + 3 NA Intergenic Intergenic -352400 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 598-121 chr6 129973271 129973546 + 3 NA Intergenic L2a|LINE|L2 -44961 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 472-233 chr4 111818357 111818648 + 3 NA Intergenic L1MB3|LINE|L1 -326952 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 470-226 chr5 153014721 153014898 + 3 NA Intergenic L1M3d|LINE|L1 -42460 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 551-116 chr3 26165846 26166176 + 3 NA Intergenic Intergenic -292316 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 433-183 chr3 162909262 162909521 + 3 NA Intergenic Intergenic 393910 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 382-199 chr2 80579896 80580072 + 3 NA intron (NM_001282599, intron 7 of 11) intron (NM_001282599, intron 7 of 11) 266605 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 621-121 chr7 104552784 104553185 + 3 NA intron (NM_199000, intron 1 of 2) MIR|SINE|MIR 224328 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 309-338 chr3 21733468 21733585 + 3 NA intron (NM_024697, intron 1 of 7) L1MC4a|LINE|L1 17684 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 908-31 chr4 35180491 35180970 + 3 NA Intergenic Intergenic -910983 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 243-10 chr1 69397678 69397770 + 3 NA Intergenic Intergenic -35531 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 706-9 chr10 76371353 76371829 + 3 NA intron (NM_001305581, intron 6 of 6) LTR78|LTR|ERV1 -516453 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 574-123 chr4 37468603 37468971 + 3 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 14862 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 775-61 chr3 186858855 186859291 + 3 NA TTS (NM_004797) TTS (NM_004797) 2295 NR_046662 100874095 Hs.638968 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 752-24 chr16 48124525 48124894 + 3 NA intron (NM_033226, intron 9 of 28) intron (NM_033226, intron 9 of 28) 22061 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 646-17 chr10 48730996 48731344 + 3 NA exon (NM_001370154, exon 9 of 11) exon (NM_001370154, exon 9 of 11) 45707 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 745-71 chr7 75860888 75861221 + 3 NA Intergenic AluJb|SINE|Alu -17938 NM_001040457 57414 Hs.488827 NM_020684 ENSG00000005486 RHBDD2 NPD007|RHBDL7 rhomboid domain containing 2 protein-coding 765-48 chr4 97616090 97616412 + 3 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 249325 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 645-96 chr5 28516407 28516852 + 3 NA Intergenic Intergenic -228964 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 433-9 chr1 165460967 165461165 + 3 NA Intergenic Intergenic -15711 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 559-5 chr1 106162009 106162257 + 3 NA Intergenic Intergenic -133880 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 452-208 chr5 30319775 30319976 + 3 NA Intergenic Intergenic 439315 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 502-217 chr5 34551838 34552077 + 3 NA Intergenic Intergenic -104371 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 646-104 chr5 119926886 119927160 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity 297464 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 786-20 chr13 55178666 55179087 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 4422 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 559-134 chr4 31915537 31915725 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -81748 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 1137-3 chr2 22729953 22730767 + 3 NA Intergenic Intergenic 193881 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 1010 chr11 38402286 38402643 + 3 NA Intergenic (CCTT)n|Simple_repeat|Simple_repeat 243892 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 436-184 chr3 84936879 84937156 + 3 NA Intergenic MSTC-int|LTR|ERVL-MaLR -21972 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 708-51 chr3 177229266 177229646 + 3 NA Intergenic Intergenic -31974 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 566-198 chr8 126917639 126917964 + 3 NA Intergenic Intergenic -95353 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 535-171 chr3 111405137 111405374 + 3 NA Intergenic L1M2a|LINE|L1 -136942 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 613-144 chr9 27137664 27137955 + 3 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 28668 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 452-58 chr12 70683730 70683968 + 3 NA intron (NR_073474, intron 5 of 10) intron (NR_073474, intron 5 of 10) -46420 NM_001330204 5787 Hs.201030 NM_002837 ENSG00000127329 PTPRB HPTP-BETA|HPTPB|PTPB|R-PTP-BETA|VEPTP protein tyrosine phosphatase receptor type B protein-coding 452-230 chr6 54576145 54576360 + 3 NA Intergenic MER110|LTR|ERV1 267811 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 307-274 chr20 41841526 41841673 + 3 NA Intergenic L1ME3|LINE|L1 -223222 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 575-79 chr19 44148690 44149081 + 3 NA exon (NM_001144824, exon 4 of 6) exon (NM_001144824, exon 4 of 6) 7331 NM_006630 10780 Hs.235992 NM_006630 ENSG00000263002 ZNF234 HZF4|ZNF269 zinc finger protein 234 protein-coding 467-152 chr20 42646485 42646715 + 3 NA intron (NM_133170, intron 7 of 31) MER3|DNA|hAT-Charlie -38883 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 473-288 chr8 139687119 139687427 + 3 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 15850 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 487-113 chr17 77613499 77613682 + 3 NA Intergenic Intergenic 66649 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 532-117 chr2 66154050 66154281 + 3 NA Intergenic L1MA4A|LINE|L1 204163 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 312-471 chr7 10184436 10184562 + 3 NA Intergenic Intergenic -518177 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 528-100 chr15 96629950 96630166 + 3 NA Intergenic Intergenic 151596 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 583-41 chr12 15868739 15868998 + 3 NA Intergenic L1MD|LINE|L1 -13519 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 514-38 chr10 105817816 105818088 + 3 NA non-coding (NR_120625, exon 3 of 4) non-coding (NR_120625, exon 3 of 4) 2381 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 574 chr1 10025360 10025675 + 3 NA Intergenic Intergenic -7441 NM_006048 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 459-53 chr11 110942554 110942864 + 3 NA Intergenic Intergenic 154609 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 411-111 chr16 79332440 79332735 + 3 NA Intergenic AluSz|SINE|Alu 268150 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 315-368 chr5 26086661 26086777 + 3 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 895766 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 524-146 chr3 5325106 5325363 + 3 NA Intergenic LTR16A1|LTR|ERVL -74979 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 325-555 chr8 131282057 131282202 + 3 NA Intergenic Intergenic -241220 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 468-255 chr5 82959519 82959772 + 3 NA Intergenic L1ME3A|LINE|L1 -99809 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 890-25 chr4 32956621 32957010 + 3 NA Intergenic MIRb|SINE|MIR 605777 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 454-235 chr4 80107697 80107930 + 3 NA Intergenic L1MEg|LINE|L1 -34341 NM_001286780 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 304-376 chr4 45975124 45975350 + 3 NA Intergenic Intergenic 148817 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 473-200 chr4 113156053 113156286 + 3 NA intron (NM_001354241, intron 2 of 45) L1ME4a|LINE|L1 3887 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 408-302 chr6 121675564 121675805 + 3 NA Intergenic Intergenic 240038 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 646-12 chr1 223442343 223442718 + 3 NA Intergenic Intergenic 49115 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 469-79 chr13 103723618 103723812 + 3 NA Intergenic Intergenic 298515 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 550-43 chr11 23723105 23723479 + 3 NA Intergenic Intergenic -304102 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 583-94 chr2 163164906 163165200 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR -326286 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 754-57 chr4 32610392 32610797 + 3 NA Intergenic L1M4|LINE|L1 259556 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 380-113 chr14 25618874 25619033 + 3 NA Intergenic Intergenic -568656 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 422-45 chr11 82661728 82661985 + 3 NA Intergenic MER117|DNA|hAT-Charlie 72008 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 1045-21 chr6 148061187 148061771 + 3 NA Intergenic L1PA11|LINE|L1 -210849 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 439-77 chr12 127249733 127249946 + 3 NA Intergenic L1MC4|LINE|L1 34444 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 405-184 chr20 48050441 48050699 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -60453 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 445-21 chr10 23169695 23169987 + 3 NA Intergenic Intergenic -22471 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 541-177 chr5 4718519 4718712 + 3 NA Intergenic MER66A|LTR|ERV1 -54866 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 385-26 chr10 44020012 44020178 + 3 NA Intergenic Intergenic 107693 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 459-314 chr8 137007033 137007225 + 3 NA Intergenic MamRep137|DNA|TcMar-Tigger 406459 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 395-119 chr16 13085009 13085229 + 3 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 183521 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 801-42 chr5 46015416 46016014 + 3 NA Intergenic ALR/Alpha|Satellite|centr -319335 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 496-126 chr19 52612916 52613233 + 3 NA exon (NM_001277945, exon 6 of 6) exon (NM_001277945, exon 6 of 6) 16390 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 469-158 chr20 54947477 54947807 + 3 NA Intergenic AluJr|SINE|Alu 472049 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 647-98 chr8 14818819 14819234 + 3 NA intron (NM_139167, intron 1 of 7) L1MA6|LINE|L1 34484 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 779-4 chr1 81629432 81629973 + 3 NA intron (NM_001366008, intron 3 of 26) (ATATAT)n|Simple_repeat|Simple_repeat -70068 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 808-38 chr4 48783281 48783618 + 3 NA Intergenic Intergenic -3150 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 890-14 chr17 52803746 52804342 + 3 NA Intergenic L1M1|LINE|L1 -58077 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 403-318 chr8 136848836 136848972 + 3 NA intron (NR_147196, intron 4 of 5) L1PA16|LINE|L1 318106 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 468-239 chr5 19874367 19874533 + 3 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 11822 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 542-128 chr3 54187338 54187669 + 3 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 64951 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 499-160 chr3 3947790 3948122 + 3 NA Intergenic L1M1|LINE|L1 -147081 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 506-38 chr10 50351812 50351995 + 3 NA intron (NM_147156, intron 6 of 10) intron (NM_147156, intron 6 of 10) -103293 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 390-319 chr6 47393624 47393823 + 3 NA Intergenic AluJb|SINE|Alu -83818 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 624-84 chr3 176726363 176726870 + 3 NA Intergenic L2c|LINE|L2 90385 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 480-41 chr11 38971122 38971347 + 3 NA Intergenic Intergenic 322376 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 357-306 chr4 37476202 37476398 + 3 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 22375 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 493-228 chr4 138144555 138144845 + 3 NA intron (NR_038380, intron 3 of 6) MLT1I|LTR|ERVL-MaLR -14015 NR_037866 641365 Hs.435630 NR_037866 ENSG00000248307 LINC00616 - long intergenic non-protein coding RNA 616 ncRNA 463-243 chr5 150818687 150818939 + 3 NA Intergenic L1MA7|LINE|L1 -27708 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 809-51 chr8 84280604 84281219 + 3 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 96245 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 509-264 chr8 135705399 135705690 + 3 NA Intergenic Intergenic 248088 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 679-100 chr7 39006831 39007254 + 3 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) 6525 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 475-19 chr10 25090687 25090877 + 3 NA Intergenic L1MA2|LINE|L1 -22276 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 407-147 chr2 118980845 118981018 + 3 NA intron (NM_006770, intron 8 of 16) intron (NM_006770, intron 8 of 16) 38762 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 482-185 chr4 70916778 70917010 + 3 NA intron (NM_173468, intron 1 of 5) MER51-int|LTR|ERV1 14525 NM_173468 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 533-81 chr17 63310787 63310973 + 3 NA intron (NM_025185, intron 8 of 25) L1M5|LINE|L1 129387 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 267-362 chr5 170591707 170591880 + 3 NA intron (NM_001278339, intron 1 of 7) L1MB3|LINE|L1 87773 NM_014592 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 297-25 chr1 167341098 167341206 + 3 NA intron (NM_001365849, intron 3 of 16) L3|LINE|CR1 12082 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 454-294 chr7 42597524 42597805 + 3 NA Intergenic Intergenic 108783 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 789-50 chr8 127195076 127195541 + 3 NA intron (NR_120364, intron 1 of 2) L1ME3Cz|LINE|L1 2319 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 541-199 chr6 18843341 18843540 + 3 NA Intergenic Intergenic 271656 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 541-257 chrX 139322147 139322544 + 3 NA Intergenic L1ME4b|LINE|L1 -117322 NM_001139501 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 329-48 chr10 36135567 36135679 + 3 NA Intergenic Intergenic 357321 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 1186-11 chr19 6190287 6190805 + 3 NA intron (NM_030924, intron 13 of 14) intron (NM_030924, intron 13 of 14) 54879 NM_001289178 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 530-40 chr11 48276277 48276565 + 3 NA Intergenic L1MA3|LINE|L1 12560 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 449-144 chr20 54513240 54513425 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 37739 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 326-197 chr17 58918178 58918361 + 3 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 162400 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 306-45 chr1 247624491 247624666 + 3 NA Intergenic L1MA3|LINE|L1 18992 NM_001001914 81469 Hs.653227 NM_001001914 ENSG00000177476 OR2G3 OR1-33 olfactory receptor family 2 subfamily G member 3 protein-coding 394-116 chr15 83527847 83528015 + 3 NA intron (NM_001324186, intron 2 of 9) L1MA4A|LINE|L1 37317 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 875-8 chr14 49931352 49931861 + 3 NA Intergenic AluSz|SINE|Alu -34793 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 456-120 chr16 50870347 50870632 + 3 NA Intergenic L1MB5|LINE|L1 -8284 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 454-206 chr3 73965618 73965872 + 3 NA Intergenic L1M5|LINE|L1 156501 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 361-335 chr4 151773277 151773515 + 3 NA Intergenic L1MEc|LINE|L1 -12373 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 378-54 chr10 43783334 43783487 + 3 NA Intergenic Intergenic -4508 NR_134483 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 489-57 chr12 64013877 64014129 + 3 NA intron (NM_001346201, intron 3 of 21) intron (NM_001346201, intron 3 of 21) 169303 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 732-92 chr8 103824236 103824534 + 3 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 5165 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 639-54 chr19 12077014 12077295 + 3 NA non-coding (NR_134326, exon 3 of 3) non-coding (NR_134326, exon 3 of 3) 12423 NM_001136501 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 448-209 chr5 43655447 43655635 + 3 NA intron (NM_012343, intron 14 of 21) Tigger4b|DNA|TcMar-Tigger -52311 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 396-317 chr6 130527801 130527996 + 3 NA Intergenic L1M7|LINE|L1 90781 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 686-69 chr6 23084061 23084431 + 3 NA Intergenic Intergenic -366322 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 424-66 chr14 56176655 56176879 + 3 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 58356 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 650-123 chr8 59815501 59815749 + 3 NA Intergenic L1MC4|LINE|L1 465775 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 429-272 chr7 31298533 31298791 + 3 NA Intergenic L1M5|LINE|L1 42064 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 471-88 chr14 84129725 84129949 + 3 NA Intergenic Intergenic -1142095 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 519-119 chr2 149178743 149178952 + 3 NA intron (NM_001317002, intron 4 of 7) intron (NM_001317002, intron 4 of 7) 60673 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 542-202 chr7 52936734 52937050 + 3 NA Intergenic LTR62|LTR|ERVL -98741 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 461-163 chr21 35752280 35752459 + 3 NA Intergenic Intergenic 31654 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 398-227 chr3 192110250 192110444 + 3 NA Intergenic Intergenic -128283 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 743-60 chr4 41739990 41740416 + 3 NA Intergenic Intergenic 8767 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 554-168 chr5 9709923 9710232 + 3 NA intron (NR_027112, intron 9 of 12) intron (NR_027112, intron 9 of 12) -79726 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 473-71 chr13 84749238 84749500 + 3 NA Intergenic Intergenic -34285 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 519-212 chr7 73940398 73940606 + 3 NA Intergenic L1M4|LINE|L1 79343 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 1028-12 chr4 61361124 61361742 + 3 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 159261 NM_001371342 504-178 chr3 193290042 193290337 + 3 NA intron (NM_198505, intron 25 of 29) intron (NM_198505, intron 25 of 29) -17055 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 888-40 chr8 134749235 134749658 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -36415 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 455-303 chrX 10850154 10850427 + 3 NA Intergenic FLAM_A|SINE|Alu -16607 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 475-61 chr12 47607233 47607428 + 3 NA Intergenic MLT-int|LTR|ERVL-MaLR 98700 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 408-72 chr12 1733484 1733699 + 3 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 42521 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 298-178 chr18 39249442 39249564 + 3 NA intron (NR_024391, intron 3 of 3) L1M5|LINE|L1 372672 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 988-35 chr7 112810212 112810649 + 3 NA Intergenic Intergenic -20007 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 1176-8 chr4 102772954 102773756 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -3682 NR_125932 102723704 Hs.638374 NR_125932 LOC102723704 - uncharacterized LOC102723704 ncRNA 552-219 chr9 1542854 1543165 + 3 NA Intergenic L1PB3|LINE|L1 -472338 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 820-52 chr6 63213361 63213850 + 3 NA Intergenic LOR1a|LTR|ERV1 106372 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 865-20 chr18 78114952 78115487 + 3 NA Intergenic L1MA6|LINE|L1 -121492 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 392-322 chr8 83419038 83419198 + 3 NA Intergenic Intergenic 15360 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 766-49 chr3 44720973 44721448 + 3 NA exon (NM_001134442, exon 3 of 3) exon (NM_001134442, exon 3 of 3) -8396 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 528-141 chr2 234139898 234140130 + 3 NA Intergenic MER63A|DNA|hAT-Blackjack 89312 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 640-81 chr3 60472903 60473215 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 144811 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 560-14 chr10 42541897 42542235 + 3 NA intron (NR_026777, intron 5 of 7) L1M4c|LINE|L1 10804 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 210-16 chr1 150717032 150717117 + 3 NA intron (NM_032132, intron 3 of 14) intron (NM_032132, intron 3 of 14) 3821 NM_032132 84072 Hs.298312 NM_032132 ENSG00000143452 HORMAD1 CT46|NOHMA HORMA domain containing 1 protein-coding 393-34 chr10 19881869 19882167 + 3 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 65586 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 425-315 chr8 125939417 125939624 + 3 NA intron (NR_038447, intron 2 of 3) LTR16A2|LTR|ERVL 11677 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 458-22 chr10 65633869 65634131 + 3 NA intron (NR_120647, intron 3 of 5) L1MA6|LINE|L1 62575 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 260-439 chr8 99605227 99605364 + 3 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -68434 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 409-297 chr8 109043411 109043673 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -43086 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 465-225 chr5 45978531 45978806 + 3 NA Intergenic ALR/Alpha|Satellite|centr -282288 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 452-111 chr18 73218574 73218764 + 3 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 45829 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 431-160 chr20 10564886 10565068 + 3 NA intron (NM_001009608, intron 4 of 7) intron (NM_001009608, intron 4 of 7) 84718 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 406-248 chr5 154257753 154257924 + 3 NA intron (NM_198321, intron 1 of 11) intron (NM_198321, intron 1 of 11) 67105 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 238-386 chr8 88502565 88502712 + 3 NA Intergenic Intergenic -175155 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 414-269 chr5 77846110 77846292 + 3 NA Intergenic Intergenic -38455 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 419-210 chr4 112480732 112480970 + 3 NA Intergenic L1MEc|LINE|L1 -34528 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 715-35 chr2 57458477 57458801 + 3 NA Intergenic L1M5|LINE|L1 -449012 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 615-71 chr2 216000649 216000924 + 3 NA intron (NM_018000, intron 1 of 4) intron (NM_018000, intron 1 of 4) 12765 NM_018000 55686 Hs.620391 NM_018000 ENSG00000118242 MREG DSU|WDT2 melanoregulin protein-coding 305-529 chr8 59178657 59178776 + 3 NA Intergenic L1MB3|LINE|L1 59506 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 398-331 chr7 94334475 94334709 + 3 NA Intergenic L1MA6|LINE|L1 57600 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 460-165 chr2 224742941 224743156 + 3 NA Intergenic Intergenic -157651 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 732-45 chr2 111249962 111250411 + 3 NA intron (NR_136165, intron 2 of 3) intron (NR_136165, intron 2 of 3) 70900 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 637-45 chr15 94540077 94540453 + 3 NA Intergenic Intergenic 184335 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 768-4 chr10 18364884 18365314 + 3 NA intron (NM_201590, intron 1 of 12) MIR3|SINE|MIR 24390 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 731-72 chr8 43812234 43812757 + 3 NA Intergenic ALR/Alpha|Satellite|centr 520053 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 486-118 chr17 75465903 75466252 + 3 NA intron (NM_014738, intron 1 of 31) AluJr4|SINE|Alu 9442 NM_001351202 9772 Hs.514474 NM_014738 ENSG00000177728 TMEM94 IDDCDF|KIAA0195 transmembrane protein 94 protein-coding 1032-15 chr5 8321737 8322266 + 3 NA Intergenic LTR82A|LTR|ERVL 135563 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 430-39 chr10 86308747 86308976 + 3 NA intron (NM_017551, intron 2 of 15) MSTD|LTR|ERVL-MaLR -44073 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 433-261 chr7 29310830 29311113 + 3 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -102001 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 403-117 chr15 94774688 94774842 + 3 NA Intergenic Intergenic -80598 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 492-103 chr16 54904177 54904433 + 3 NA Intergenic L1MC1|LINE|L1 24473 NR_110454 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 590-47 chr14 58853031 58853360 + 3 NA intron (NR_110547, intron 1 of 5) MLT1G1-int|LTR|ERVL-MaLR 24907 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 541-31 chr11 25468791 25469091 + 3 NA Intergenic L1MD2|LINE|L1 -720182 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 324-261 chr2 62908542 62908682 + 3 NA intron (NM_001142615, intron 10 of 22) L1M5|LINE|L1 139099 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 920-15 chr18 1666983 1667633 + 3 NA Intergenic L1ME4b|LINE|L1 -307679 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 622-53 chr2 34828001 34828378 + 3 NA Intergenic L2b|LINE|L2 150632 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 868-19 chr2 21876576 21877179 + 3 NA Intergenic L1PA15|LINE|L1 -166225 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 522-126 chr2 44526564 44526799 + 3 NA intron (NM_024766, intron 3 of 10) MLT2B1|LTR|ERVL 164734 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 424-215 chr5 27310034 27310284 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -162133 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 415-190 chr4 30352297 30352451 + 3 NA Intergenic Intergenic -367995 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 919-7 chr14 77999122 77999561 + 3 NA Intergenic L1ME1|LINE|L1 -171032 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 639-40 chr14 78218067 78218430 + 3 NA intron (NR_073547, intron 1 of 20) AluJr|SINE|Alu 47875 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 439-265 chr7 42504543 42504809 + 3 NA Intergenic L1ME3|LINE|L1 201771 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 482-154 chr22 33425559 33425852 + 3 NA intron (NM_133642, intron 7 of 14) MER103C|DNA|hAT-Charlie 10964 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 942-22 chr20 57697921 57698329 + 3 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) -7439 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 479-235 chr7 114037525 114037705 + 3 NA Intergenic AluSx3|SINE|Alu -48712 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 697-45 chr2 123110820 123111173 + 3 NA Intergenic L1MD3|LINE|L1 -37515 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 310-407 chr5 83055871 83056042 + 3 NA 3' UTR (NM_174909, exon 4 of 4) 3' UTR (NM_174909, exon 4 of 4) 8381 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 357-252 chr21 33136586 33136838 + 3 NA Intergenic Intergenic -13012 NR_109961 101928107 Hs.382669 NR_109961 ENSG00000226527 LOC101928107 - uncharacterized LOC101928107 ncRNA 366-251 chr20 40837772 40838044 + 3 NA Intergenic Intergenic -123285 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 283-22 chr1 162835024 162835186 + 3 NA Intergenic Intergenic 33710 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 346-356 chr4 66191212 66191424 + 3 NA Intergenic Intergenic -85506 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 606-103 chr3 3060611 3060947 + 3 NA intron (NR_046554, intron 1 of 3) intron (NR_046554, intron 1 of 3) 366 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 462-88 chr15 26695468 26695710 + 3 NA intron (NM_001278631, intron 3 of 9) L1MCa|LINE|L1 21176 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 859-10 chr14 39378332 39378698 + 3 NA intron (NM_001354155, intron 22 of 22) MER4-int|LTR|ERV1 53985 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 520-115 chr17 16553550 16553844 + 3 NA intron (NM_020653, intron 5 of 5) intron (NM_020653, intron 5 of 5) 15507 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 773 chr1 69915681 69916020 + 3 NA intron (NM_001370785, intron 7 of 26) MIR|SINE|MIR -3472 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 613-30 chr14 57751509 57751840 + 3 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 113325 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 427-169 chr3 162260341 162260539 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 763632 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 659-40 chr17 51919479 51919959 + 3 NA intron (NM_001082533, intron 4 of 9) AluSx4|SINE|Alu 238995 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 419-148 chr2 117575261 117575468 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -239327 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 611-12 chr10 39115422 39115633 + 3 NA Intergenic ALR/Alpha|Satellite|centr 418931 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 680 chr1 13978179 13978485 + 3 NA Intergenic L1MEg|LINE|L1 228917 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 433-109 chr17 56263102 56263330 + 3 NA intron (NM_001370326, intron 3 of 20) intron (NM_001370326, intron 3 of 20) 109741 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 502-67 chr12 44804803 44805075 + 3 NA intron (NM_006159, intron 4 of 20) intron (NM_006159, intron 4 of 20) 70722 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 510-116 chr18 71366167 71366408 + 3 NA Intergenic L1M2|LINE|L1 212669 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 625-31 chr14 55536128 55536574 + 3 NA Intergenic L1ME1|LINE|L1 43741 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 1522-5 chr9 36786296 36787127 + 3 NA Intergenic LTR16A|LTR|ERVL 36888 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 322-72 chr10 81606319 81606511 + 3 NA Intergenic L1MEd|LINE|L1 -268779 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 693-18 chr11 110943026 110943382 + 3 NA Intergenic Intergenic 154114 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 241-124 chr15 24980717 24980881 + 3 NA intron (NR_146177, intron 14 of 147) intron (NR_146177, intron 14 of 147) -1195 NR_022011 347746 Hs.733072 NR_022011 PWARSN PAR-SN|PARSN Prader Willi/Angelman region RNA, SNRPN neighbor ncRNA 493-50 chr11 87705100 87705299 + 3 NA Intergenic L1MA2|LINE|L1 14212 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 313-17 chr1 98105892 98106017 + 3 NA Intergenic Intergenic -56261 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 447-151 chr20 31061571 31061769 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -195994 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 645-94 chr5 15856845 15857272 + 3 NA intron (NM_001278317, intron 2 of 3) L1ME3G|LINE|L1 -78124 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 413-305 chr8 87016632 87016785 + 3 NA intron (NM_173538, intron 4 of 10) MER4B-int|LTR|ERV1 150293 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 425-160 chr2 240532470 240532652 + 3 NA intron (NR_148698, intron 3 of 5) intron (NR_148698, intron 3 of 5) 25427 NM_017844 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 529 chr1 40586558 40586828 + 3 NA Intergenic Intergenic 55056 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 359-139 chr14 46554314 46554487 + 3 NA Intergenic L1PA15-16|LINE|L1 83041 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 306-23 chr1 106673608 106673773 + 3 NA Intergenic L1ME3A|LINE|L1 -144549 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 567-25 chr10 84598002 84598288 + 3 NA Intergenic Intergenic 172976 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 569-125 chr3 193340384 193340760 + 3 NA intron (NM_198505, intron 9 of 29) intron (NM_198505, intron 9 of 29) 33328 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 341-248 chr2 66018733 66018970 + 3 NA Intergenic Intergenic 339477 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 665-80 chr5 153828253 153828613 + 3 NA Intergenic Intergenic 70554 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 499-133 chr2 183093380 183093657 + 3 NA intron (NR_135688, intron 2 of 2) intron (NR_135688, intron 2 of 2) 14771 NM_001321519 142679 Hs.132237 NM_080876 ENSG00000162999 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 467-121 chr19 16919858 16920132 + 3 NA intron (NM_015692, intron 27 of 41) MIRb|SINE|MIR -23048 NR_147452 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 844-41 chr20 8892262 8892800 + 3 NA Intergenic L2a|LINE|L2 61346 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 166-12 chr11 94529835 94529894 + 3 NA intron (NM_001190462, intron 3 of 3) intron (NM_001190462, intron 3 of 3) -13987 NM_002033 2526 Hs.390420 NM_002033 ENSG00000196371 FUT4 CD15|ELFT|FCT3A|FUC-TIV|FUTIV|LeX|SSEA-1 fucosyltransferase 4 protein-coding 490-230 chr5 132521543 132521840 + 3 NA Intergenic L1M4|LINE|L1 21831 NM_000879 3567 Hs.2247 NM_000879 ENSG00000113525 IL5 EDF|IL-5|TRF interleukin 5 protein-coding 627-127 chrX 75401232 75401594 + 3 NA intron (NM_001146256, intron 9 of 10) L1PA14|LINE|L1 121624 NM_001146257 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 130-19 chr12 94718542 94718591 + 3 NA Intergenic L1MC5|LINE|L1 -68009 NM_020698 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 289-413 chr6 63902516 63902651 + 3 NA intron (NM_001292009, intron 35 of 43) L1M4a2|LINE|L1 95747 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 599-110 chr5 97772943 97773211 + 3 NA Intergenic Intergenic -67681 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 654-53 chr19 9338958 9339298 + 3 NA intron (NM_001172650, intron 3 of 11) intron (NM_001172650, intron 3 of 11) 14433 NM_001202425 100529215 Hs.728944 NM_001172650 ENSG00000270011 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 620-51 chr18 13316338 13316686 + 3 NA intron (NM_181482, intron 2 of 5) L1MEg|LINE|L1 38407 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 523-132 chr2 82982052 82982328 + 3 NA Intergenic MLT2A2|LTR|ERVL 125387 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 433-249 chr6 130505338 130505522 + 3 NA Intergenic L1MA2|LINE|L1 68313 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 610-105 chr22 21885876 21886249 + 3 NA Intergenic AluJb|SINE|Alu -18382 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 364-267 chr3 9208374 9208644 + 3 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) -8386 NR_103443 100288831 Hs.694646 NR_103443 ENSG00000227929 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 265-245 chr3 104278053 104278212 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 -754016 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 403-254 chr5 95705853 95706033 + 3 NA intron (NM_001349303, intron 3 of 8) intron (NM_001349303, intron 3 of 8) -22933 NR_125328 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 454-125 chr18 65221523 65221787 + 3 NA Intergenic Intergenic -528597 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 520-53 chr11 84368746 84369028 + 3 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -51548 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 604-105 chr3 16798471 16798918 + 3 NA Intergenic Intergenic -86261 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 694-77 chr21 16424583 16425015 + 3 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 4504 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 288-106 chr13 109365494 109365612 + 3 NA Intergenic AluJb|SINE|Alu -35143 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 555-9 chr1 231603763 231604027 + 3 NA intron (NR_034037, intron 1 of 1) intron (NR_034037, intron 1 of 1) 8195 NR_034037 100287814 Hs.25555 NR_034037 ENSG00000229228 LINC00582 - long intergenic non-protein coding RNA 582 ncRNA 544-160 chr4 39018348 39018535 + 3 NA intron (NM_001303228, intron 1 of 6) L1MEd|LINE|L1 13968 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 414-320 chr8 54900514 54900711 + 3 NA Intergenic Intergenic -201416 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 664-56 chr2 100314427 100314685 + 3 NA intron (NM_198461, intron 1 of 11) L1ME3|LINE|L1 8177 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 494-271 chr7 71661011 71661192 + 3 NA intron (NM_022479, intron 6 of 10) intron (NM_022479, intron 6 of 10) -353331 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 1122-4 chr11 34808666 34809293 + 3 NA Intergenic Intergenic -107151 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 786-9 chr10 78878818 78879234 + 3 NA Intergenic HAL1b|LINE|L1 188422 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 566-23 chr11 55499338 55499595 + 3 NA Intergenic L1MA5A|LINE|L1 -54803 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 458-61 chr13 79008595 79008779 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -168637 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 320-178 chr15 98798924 98799031 + 3 NA intron (NM_000875, intron 2 of 20) MIR|SINE|MIR 14551 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 572-171 chr8 107721734 107721983 + 3 NA Intergenic L1ME2|LINE|L1 -223940 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 534-148 chr21 31466640 31466841 + 3 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 92347 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 413-55 chr11 103752658 103752853 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -97151 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 388-213 chr3 2814626 2814814 + 3 NA intron (NM_175607, intron 6 of 24) intron (NM_175607, intron 6 of 24) -77495 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 759-50 chr4 11354299 11354747 + 3 NA Intergenic (CAA)n|Simple_repeat|Simple_repeat -14304 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 360-381 chr5 141184889 141185095 + 3 NA 3' UTR (NM_020957, exon 1 of 1) 3' UTR (NM_020957, exon 1 of 1) -2169 NM_019119 56127 Hs.662726 NM_019119 ENSG00000177839 PCDHB9 PCDH-BETA9|PCDH3H protocadherin beta 9 protein-coding 495-189 chr4 175113193 175113388 + 3 NA Intergenic L1M2|LINE|L1 194932 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 247-20 chr1 175494724 175494828 + 3 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) 248819 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 435-51 chr11 79260529 79260720 + 3 NA intron (NM_001098816, intron 2 of 33) L2c|LINE|L2 141485 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 496-305 chr9 78323727 78323919 + 3 NA intron (NM_021154, intron 7 of 7) intron (NM_021154, intron 7 of 7) 26698 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 430-259 chr6 39427609 39427768 + 3 NA intron (NM_001289020, intron 14 of 21) intron (NM_001289020, intron 14 of 21) 3702 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 494-314 chr9 87943314 87943540 + 3 NA Intergenic L1MEc|LINE|L1 -4167 NR_149022 497256 Hs.584108 NR_149022 LOC497256 - uncharacterized LOC497256 ncRNA 657-105 chr9 26647173 26647500 + 3 NA Intergenic Intergenic 245466 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 888-8 chr12 20226086 20226658 + 3 NA Intergenic Intergenic -98471 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 390-268 chr4 90037787 90038031 + 3 NA Intergenic Intergenic -89624 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 297-29 chr1 182360001 182360115 + 3 NA Intergenic Intergenic 31346 NM_001033056 2752 Hs.132016 NM_002065 ENSG00000135821 GLUL GLNS|GS|PIG43|PIG59 glutamate-ammonia ligase protein-coding 201-234 chr8 38583196 38583300 + 3 NA Intergenic Intergenic 18009 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 395-305 chr7 15922144 15922406 + 3 NA Intergenic Intergenic 233897 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 864-13 chr14 71992817 71993212 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 59487 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 794-47 chr8 127318419 127318778 + 3 NA intron (NR_117100, intron 5 of 5) L1M3|LINE|L1 73961 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 472-90 chr14 69958344 69958588 + 3 NA intron (NM_001034852, intron 3 of 11) L1M5|LINE|L1 -19667 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 631-39 chr14 60547348 60547708 + 3 NA Intergenic L1MA5A|LINE|L1 38382 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 662-88 chr7 38303515 38303882 + 3 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -30051 NM_001003799 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 456-293 chr7 11837188 11837385 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -5088 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 1039-3 chr10 89872145 89872802 + 3 NA intron (NR_149080, intron 1 of 1) intron (NR_149080, intron 1 of 1) -15661 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 580-140 chr4 95705925 95706224 + 3 NA Intergenic Intergenic -134019 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 690-48 chr16 77954441 77954805 + 3 NA intron (NM_020927, intron 7 of 8) AluSg|SINE|Alu -67925 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 290-399 chr6 153176483 153176620 + 3 NA Intergenic Intergenic -45269 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 428-65 chr14 43742773 43742973 + 3 NA Intergenic Intergenic 764410 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 451-163 chr4 73355457 73355760 + 3 NA Intergenic L2c|LINE|L2 -48679 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 645-52 chr2 48284440 48284803 + 3 NA Intergenic Intergenic -30061 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 384-251 chr4 33314389 33314630 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 725384 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 514-295 chr9 72895060 72895417 + 3 NA Intergenic MIRb|SINE|MIR -21129 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 450-320 chr9 73800425 73800757 + 3 NA Intergenic L1M2|LINE|L1 -570940 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 655-112 chr7 109086616 109087128 + 3 NA Intergenic L1ME3G|LINE|L1 -202285 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 670-38 chr14 85642909 85643308 + 3 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 109759 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 379-299 chr6 113927165 113927329 + 3 NA Intergenic Intergenic 22860 NR_027060 285759 Hs.376634 NM_173673 ENSG00000175967 FLJ34503 - uncharacterized FLJ34503 ncRNA 317-516 chr8 139170137 139170329 + 3 NA Intergenic Intergenic -256192 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 628-99 chr4 170891409 170891754 + 3 NA Intergenic MIRb|SINE|MIR -147846 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 837-3 chr10 105673833 105674193 + 3 NA intron (NR_120625, intron 3 of 3) MER57B2|LTR|ERV1 146320 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 556-149 chr3 143449826 143450095 + 3 NA intron (NM_173653, intron 12 of 15) (TATATAA)n|Simple_repeat|Simple_repeat 107714 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 321-159 chr14 19923654 19923810 + 3 NA Intergenic L1M5|LINE|L1 3125 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 416-332 chr8 67924852 67925053 + 3 NA Intergenic L1MCa|LINE|L1 -27094 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 217-111 chr14 54306269 54306397 + 3 NA Intergenic Intergenic -90535 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 492-142 chr2 165082570 165082832 + 3 NA Intergenic L1M4b|LINE|L1 121349 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 476-278 chr8 141765521 141765723 + 3 NA Intergenic MER53|DNA|hAT 20691 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 511-246 chr7 40712294 40712495 + 3 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 267545 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 753-3 chr1 165220581 165221017 + 3 NA intron (NM_177398, intron 4 of 8) MIR3|SINE|MIR 135442 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 382-128 chr16 50439641 50439844 + 3 NA Intergenic L1MC1|LINE|L1 -44609 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 425-268 chr6 146962835 146963001 + 3 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -159094 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 783-80 chr9 85420480 85420902 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 321338 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 576-169 chr8 107071889 107072298 + 3 NA Intergenic Intergenic 264422 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 695-74 chr4 152657662 152658112 + 3 NA intron (NM_152680, intron 1 of 6) L1MA4A|LINE|L1 22110 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 691-42 chr2 81398036 81398412 + 3 NA Intergenic Intergenic 68722 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 459-73 chr13 87698614 87698886 + 3 NA Intergenic Intergenic 26135 NM_015567 26050 Hs.591208 NM_015567 ENSG00000165300 SLITRK5 LRRC11|bA364G4.2 SLIT and NTRK like family member 5 protein-coding 521-88 chr15 26504621 26504810 + 3 NA Intergenic Intergenic 124375 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 550-143 chr3 1553865 1554117 + 3 NA Intergenic Intergenic 460967 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 502-100 chr15 92313680 92313892 + 3 NA Intergenic Intergenic -80095 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 758-38 chr2 39655274 39655781 + 3 NA Intergenic L1PA8|LINE|L1 -9971 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 497-167 chr22 43779774 43780024 + 3 NA intron (NM_022785, intron 3 of 31) L1M5|LINE|L1 32406 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 489-104 chr17 41142312 41142576 + 3 NA intron (NM_001277332, intron 2 of 5) intron (NM_001277332, intron 2 of 5) -1957 NM_030976 81871 Hs.307014 NM_030976 ENSG00000198090 KRTAP4-6 KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 keratin associated protein 4-6 protein-coding 572-3 chr1 44142518 44142859 + 3 NA Intergenic Intergenic -1057 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 356-386 chr5 23698219 23698381 + 3 NA Intergenic Intergenic 190645 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 427-261 chr8 102545753 102546029 + 3 NA Intergenic FLAM_C|SINE|Alu -5698 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 822-19 chr17 13480571 13481082 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 62820 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 471-215 chr5 114216719 114216883 + 3 NA Intergenic L1MC1|LINE|L1 -145269 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 327-357 chr4 34492331 34492496 + 3 NA Intergenic Intergenic -222666 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 176-116 chr5 150246550 150246611 + 3 NA intron (NM_001369025, intron 12 of 17) MER102b|DNA|hAT-Charlie 43193 NM_001369025 815 Hs.743976 NM_015981 ENSG00000070808 CAMK2A CAMKA|CaMKIINalpha|MRD53|MRT63 calcium/calmodulin dependent protein kinase II alpha protein-coding 562-190 chr6 24030564 24030783 + 3 NA Intergenic L1MEg|LINE|L1 -95542 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 506-174 chr22 27432428 27432596 + 3 NA Intergenic L2c|LINE|L2 121861 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 838-36 chr8 70240158 70240629 + 3 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 162997 NM_001321707 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 629-88 chr4 79769058 79769455 + 3 NA Intergenic L1MEc|LINE|L1 -58215 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 576-23 chr11 41769609 41769970 + 3 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 55221 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 279-273 chr3 122904956 122905098 + 3 NA Intergenic HAL1|LINE|L1 18514 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 349-143 chr13 61212528 61212664 + 3 NA Intergenic Intergenic -12716 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 594-117 chr5 107487818 107488062 + 3 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 182997 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 756-65 chr8 138972246 138972778 + 3 NA Intergenic L1MA10|LINE|L1 -58471 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 894 chr1 5216619 5217200 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 562300 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 675-28 chr14 54034562 54035003 + 3 NA Intergenic AluJr|SINE|Alu -77891 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 600-111 chr6 129280535 129280907 + 3 NA intron (NM_000426, intron 18 of 64) intron (NM_000426, intron 18 of 64) 397580 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 474-141 chr2 103942774 103943062 + 3 NA Intergenic L1MDa|LINE|L1 465414 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 575-166 chr6 40637725 40638000 + 3 NA Intergenic L2b|LINE|L2 -50498 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 632-80 chr3 167959302 167959687 + 3 NA Intergenic Intergenic 63546 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 916-32 chr6 56620025 56620526 + 3 NA exon (NM_001723, exon 23 of 24) exon (NM_001723, exon 23 of 24) 22614 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 266-288 chr4 65845071 65845207 + 3 NA Intergenic Intergenic -174644 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 312-47 chr10 61317170 61317318 + 3 NA Intergenic MIR|SINE|MIR -135395 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 273-257 chr20 21115782 21115906 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -9486 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 592-118 chr3 124116743 124117107 + 3 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) -16004 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 493-90 chr14_GL000225v1_random 85601 85794 + 3 NA NA BSR/Beta|Satellite|Satellite NA NA 484-205 chr5 26162158 26162336 + 3 NA Intergenic L1MC3|LINE|L1 876339 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 778-38 chr2 189518512 189518994 + 3 NA Intergenic Intergenic 62058 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 571-69 chr19 52469966 52470279 + 3 NA intron (NM_001366182, intron 3 of 5) HERVL-int|LTR|ERVL 16569 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 1022 chr1 66551517 66552208 + 3 NA intron (NM_001350218, intron 1 of 22) intron (NM_001350218, intron 1 of 22) 17709 NM_032291 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 524-244 chr7 115785978 115786308 + 3 NA Intergenic L1MA8|LINE|L1 182170 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 420-194 chr3 174393445 174393667 + 3 NA Intergenic Intergenic -465778 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 359-129 chr13 47879012 47879189 + 3 NA Intergenic Intergenic 53522 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 463-220 chr5 3937844 3938034 + 3 NA Intergenic L1MC1|LINE|L1 342107 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 577-186 chr7 97515144 97515430 + 3 NA Intergenic Intergenic -216799 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 726-6 chr10 16325291 16325664 + 3 NA Intergenic Intergenic -111466 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 386-249 chr3 187658930 187659187 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 11336 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 591-114 chr4 90326158 90326478 + 3 NA intron (NM_207491, intron 3 of 7) AluY|SINE|Alu 91287 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 329-602 chr9 21759346 21759548 + 3 NA Intergenic Intergenic -43189 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 935-24 chr20 46748494 46748846 + 3 NA Intergenic Intergenic 39021 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 378-372 chr6 56389479 56389722 + 3 NA intron (NM_001318752, intron 1 of 28) L1M1|LINE|L1 4528 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 566-202 chr8 139735241 139735498 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -32246 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 479-190 chr5 40883723 40883963 + 3 NA Intergenic Intergenic -25654 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 307-196 chr18 3125194 3125385 + 3 NA intron (NM_019856, intron 18 of 36) L1ME3B|LINE|L1 94679 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 726-78 chr8 102075474 102075946 + 3 NA intron (NM_001040624, intron 1 of 7) AluSg7|SINE|Alu 48624 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 581-130 chr5 11209007 11209342 + 3 NA intron (NM_001288715, intron 9 of 20) L1MD|LINE|L1 379743 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 743-48 chr20 4296011 4296457 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -46947 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 484-34 chr10 111299346 111299525 + 3 NA Intergenic Intergenic 185144 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 440-27 chr10 86205352 86205609 + 3 NA intron (NM_017551, intron 3 of 15) L1MD2|LINE|L1 59308 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 350-547 chr8 136745913 136746178 + 3 NA intron (NR_147196, intron 2 of 5) L1M3b|LINE|L1 215247 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 688-27 chr11 101043561 101043891 + 3 NA intron (NR_073143, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 85337 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 583-110 chr3 84939206 84939524 + 3 NA Intergenic Intergenic -19624 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 782-46 chr3 89903323 89903678 + 3 NA Intergenic L1MEc|LINE|L1 795879 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 571-140 chr5 125896189 125896655 + 3 NA Intergenic Intergenic -283155 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 363-14 chr1 109565376 109565583 + 3 NA intron (NM_006496, intron 1 of 8) intron (NM_006496, intron 1 of 8) 16864 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 843-27 chr2 154659881 154660407 + 3 NA Intergenic Intergenic -38437 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 331-345 chr3 54669518 54669698 + 3 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -29751 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 243-344 chr4 189343488 189343582 + 3 NA Intergenic Intergenic -316071 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 344-145 chr14 83907687 83907863 + 3 NA Intergenic Intergenic 1265143 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 467-205 chr4 71540407 71540605 + 3 NA intron (NM_003759, intron 15 of 22) intron (NM_003759, intron 15 of 22) 201453 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 619-96 chr4 165768906 165769250 + 3 NA Intergenic Intergenic -26007 NR_121677 101928131 Hs.406479 NR_121677 LOC101928131 - uncharacterized LOC101928131 ncRNA 583-17 chr10 43484215 43484444 + 3 NA Intergenic AluSx1|SINE|Alu 47218 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 295-119 chr13 106129956 106130102 + 3 NA Intergenic Intergenic -246535 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 1656 chr19 52031271 52032426 + 3 NA 3' UTR (NM_014650, exon 5 of 5) 3' UTR (NM_014650, exon 5 of 5) -3469 NM_025040 80110 Hs.292336 NM_025040 ENSG00000142556 ZNF614 - zinc finger protein 614 protein-coding 528-126 chr2 63522666 63522937 + 3 NA intron (NR_148705, intron 1 of 16) L1PA13|LINE|L1 65676 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 1108-12 chr2 167464159 167464528 + 3 NA Intergenic Intergenic 276971 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 331-40 chr10 9461999 9462198 + 3 NA Intergenic L1ME3B|LINE|L1 -166505 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 460-14 chr1 176540878 176541054 + 3 NA intron (NM_021936, intron 1 of 4) LTR90B|LTR|LTR 77791 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 216-62 chr11 96519624 96519757 + 3 NA Intergenic L1PA13|LINE|L1 11265 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1173-6 chr19 8714915 8715615 + 3 NA Intergenic L1M4c|LINE|L1 -15689 NM_001004699 284383 Hs.553675 NM_001004699 ENSG00000181733 OR2Z1 OR19-4|OR2Z2 olfactory receptor family 2 subfamily Z member 1 protein-coding 530-61 chr12 84190318 84190672 + 3 NA Intergenic L1PA16|LINE|L1 722304 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 519-140 chr22 27644028 27644279 + 3 NA Intergenic L1ME3E|LINE|L1 157603 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 481-121 chr18 2400352 2400567 + 3 NA Intergenic HAL1|LINE|L1 171046 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 398-55 chr11 23606262 23606447 + 3 NA Intergenic Intergenic -187164 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 537-58 chr13 40522391 40522681 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -41530 NR_024507 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 432-95 chr16 66115225 66115514 + 3 NA Intergenic Intergenic -251322 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 741-77 chr8 126337621 126338145 + 3 NA Intergenic L1PB2|LINE|L1 12388 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 320-115 chr12 27756517 27756704 + 3 NA TTS (NM_001190864) TTS (NM_001190864) 14972 NM_001146221 100287284 NM_001146221 ENSG00000205693 MANSC4 - MANSC domain containing 4 protein-coding 477-171 chr2 193964362 193964544 + 3 NA Intergenic Intergenic -379816 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 454-317 chr8 113115554 113115789 + 3 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 261481 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 593-65 chr19 413623 413837 + 3 NA Intergenic Intergenic -4583 NM_001136263 126567 Hs.223770 NM_001136263 ENSG00000183186 C2CD4C FAM148C|KIAA1957|NLF3 C2 calcium dependent domain containing 4C protein-coding 373-379 chr7 49292208 49292457 + 3 NA Intergenic Intergenic 367785 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 481-111 chr16 54354559 54354746 + 3 NA Intergenic L1ME3A|LINE|L1 15806 NR_134922 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 361-267 chr22 27914942 27915140 + 3 NA intron (NM_012399, intron 1 of 11) intron (NM_012399, intron 1 of 11) 4173 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 777-52 chr5 54762335 54762790 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -18304 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 439-282 chr8 81342198 81342389 + 3 NA Intergenic Intergenic 61757 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 921-29 chr9 134015558 134016206 + 3 NA Intergenic AluSp|SINE|Alu -9594 NR_149319 266655 Hs.654869 NM_001355256 ENSG00000235106 BRD3OS LINC00094|LP2477|NCRNA00094 BRD3 opposite strand protein-coding 746-3 chr1 84829859 84830238 + 3 NA intron (NM_012152, intron 2 of 2) MamRep605|LTR?|LTR? 63158 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 506-240 chr5 127579277 127579587 + 3 NA Intergenic L1MA9|LINE|L1 61792 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 368-162 chr15 64435602 64435766 + 3 NA intron (NM_001321924, intron 11 of 12) L2a|LINE|L2 47848 NR_135855 9325 Hs.500340 NM_016213 ENSG00000103671 TRIP4 ASC-1|ASC1|HsT17391|MDCDC|SMABF1|ZC2HC5 thyroid hormone receptor interactor 4 protein-coding 241-13 chr1 97827260 97827391 + 3 NA intron (NM_000110, intron 3 of 22) intron (NM_000110, intron 3 of 22) 30404 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 614-137 chr8 106947124 106947489 + 3 NA Intergenic Intergenic -177062 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 649-116 chr8 144570349 144570732 + 3 NA intron (NM_025251, intron 2 of 10) L1PA6|LINE|L1 35155 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 952-8 chr14 38328884 38329251 + 3 NA Intergenic L1MA4|LINE|L1 -72974 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 297-393 chr5 174290622 174290832 + 3 NA Intergenic Intergenic -45627 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 517-158 chr20 31057597 31057949 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -199891 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 498-198 chr4 101563612 101563898 + 3 NA Intergenic Intergenic 215978 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 877-26 chr5 81089527 81089962 + 3 NA intron (NM_006909, intron 9 of 26) MIR|SINE|MIR -128837 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 479-18 chr10 18482251 18482505 + 3 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 81803 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 363-434 chr8 60770588 60770756 + 3 NA intron (NM_017780, intron 2 of 37) intron (NM_017780, intron 2 of 37) 29413 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 858-19 chr18 5160776 5161165 + 3 NA intron (NM_001330553, intron 1 of 1) L1ME3B|LINE|L1 36287 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 995 chr10 5702235 5702805 + 3 NA intron (NM_017782, intron 1 of 20) L1MA4|LINE|L1 17682 NM_017782 54906 Hs.610717 NM_017782 ENSG00000108021 TASOR2 C10orf18|FAM208B|bA318E3.2 transcription activation suppressor family member 2 protein-coding 679-55 chr2 178248732 178249104 + 3 NA intron (NM_001201480, intron 1 of 25) L1ME4a|LINE|L1 54406 NM_001201481 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 503-211 chr4 44392265 44392481 + 3 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 56436 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 589-86 chr3 7280560 7280863 + 3 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) 254573 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 678-32 chr15 100303132 100303436 + 3 NA intron (NM_139057, intron 3 of 21) L1MB8|LINE|L1 38691 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 477-6 chr1 41955378 41955684 + 3 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -36609 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 414-125 chr17 72956636 72956830 + 3 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 135955 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 568-186 chr7 135154984 135155249 + 3 NA intron (NM_018295, intron 1 of 1) L1M2a1|LINE|L1 7044 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 461-289 chr9 37233082 37233333 + 3 NA intron (NM_001289120, intron 2 of 8) Tigger5b|DNA|TcMar-Tigger 112609 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 340-118 chr12 119848311 119848470 + 3 NA intron (NM_007174, intron 5 of 46) intron (NM_007174, intron 5 of 46) 28930 NM_001206999 11113 Hs.119594 NM_007174 ENSG00000122966 CIT CITK|CRIK|MCPH17|STK21 citron rho-interacting serine/threonine kinase protein-coding 536-233 chr8 105181882 105182222 + 3 NA Intergenic L1PA16|LINE|L1 -136386 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 356-315 chr3 5999765 5999936 + 3 NA Intergenic Intergenic -749595 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 722-6 chr1 114181886 114182252 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -28200 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 691-73 chr6 39130348 39130792 + 3 NA Intergenic Intergenic -15384 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 529-199 chr6 126494201 126494469 + 3 NA Intergenic Intergenic 9704 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 164-38 chr14 81294107 81294170 + 3 NA intron (NM_001366850, intron 5 of 7) intron (NM_001366850, intron 5 of 7) -72748 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 525-178 chr4 95927793 95928123 + 3 NA Intergenic MER4-int|LTR|ERV1 87865 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 565-30 chr12 5310605 5310895 + 3 NA Intergenic Intergenic -67599 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 517-16 chr1 192718216 192718465 + 3 NA Intergenic L1M1|LINE|L1 2012 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 333-187 chr17 47153598 47153832 + 3 NA intron (NR_148340, intron 6 of 16) intron (NR_148340, intron 6 of 16) 35580 NM_001353050 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 481-48 chr11 22119926 22120189 + 3 NA Intergenic MER3|DNA|hAT-Charlie -73028 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 535-256 chr9 30800872 30801297 + 3 NA Intergenic L1ME1|LINE|L1 -392630 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 482-205 chr5 114935542 114935798 + 3 NA Intergenic L1M5|LINE|L1 -162257 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 683 chr1 50210946 50211288 + 3 NA Intergenic MER61A|LTR|ERV1 101284 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 434-166 chr21 28130479 28130699 + 3 NA non-coding (NR_126010, exon 3 of 5) non-coding (NR_126010, exon 3 of 5) 40186 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 468-84 chr14 86517764 86518172 + 3 NA Intergenic Intergenic -387810 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 364-232 chr2 172676091 172676256 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -59672 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 546-158 chr3 195021415 195021622 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X -73070 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 588-122 chr5 24681439 24681862 + 3 NA Intergenic Intergenic -36672 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 868-8 chr11 115882780 115883362 + 3 NA Intergenic L1ME3A|LINE|L1 -122871 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 482-265 chr8 68488916 68489125 + 3 NA intron (NR_146187, intron 4 of 13) Charlie1|DNA|hAT-Charlie -157529 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 805-19 chr19 24333402 24333832 + 3 NA Intergenic ALR/Alpha|Satellite|centr -170170 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 931-14 chr2 121673232 121673665 + 3 NA intron (NR_037857, intron 2 of 3) AluSx|SINE|Alu 23459 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 365-414 chr8 135773990 135774196 + 3 NA Intergenic L1MA5|LINE|L1 316637 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 551-37 chr12 16440751 16440976 + 3 NA Intergenic L1ME3|LINE|L1 87446 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 534-150 chr22 25497965 25498143 + 3 NA Intergenic L1ME3A|LINE|L1 42408 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 695-54 chr2 174649268 174649642 + 3 NA intron (NM_001077269, intron 1 of 7) MER74B|LTR|ERVL -14850 NM_003387 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 260-3 chr1 42668770 42668909 + 3 NA intron (NM_006347, intron 9 of 9) intron (NM_006347, intron 9 of 9) 10416 NM_001330510 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 518-176 chr3 51430868 51431141 + 3 NA intron (NR_146065, intron 9 of 25) AluJb|SINE|Alu 39719 NM_013286 29890 Hs.118738 NM_013286 ENSG00000259956 RBM15B HUMAGCGB|HsOTT3|OTT3 RNA binding motif protein 15B protein-coding 376-213 chr20 39473731 39473947 + 3 NA Intergenic Intergenic -249091 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 250-109 chr13 84301740 84301904 + 3 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 161220 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 409-315 chr9 120121841 120122004 + 3 NA Intergenic L1M3|LINE|L1 123128 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 523-151 chr20 34238419 34238613 + 3 NA Intergenic L1M4c|LINE|L1 -21849 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 1076-23 chr8 66739821 66740454 + 3 NA intron (NM_001033578, intron 1 of 16) intron (NM_001033578, intron 1 of 16) 27356 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 840-40 chr5 90002828 90003229 + 3 NA Intergenic L1PB1|LINE|L1 13692 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 606-55 chr15 94733825 94734118 + 3 NA Intergenic Intergenic -121392 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 463-267 chr7 54005383 54005671 + 3 NA Intergenic Intergenic -193596 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 558-125 chr22 26252857 26253106 + 3 NA intron (NM_001184776, intron 1 of 14) L1PA16|LINE|L1 83507 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 525-170 chr4 17983208 17983486 + 3 NA intron (NR_158566, intron 1 of 5) L1PREC2|LINE|L1 38408 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 485-175 chr3 4603885 4604182 + 3 NA intron (NM_001168272, intron 4 of 60) L1PA16|LINE|L1 110685 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 519-131 chr20 18035968 18036378 + 3 NA intron (NM_001303461, intron 3 of 3) AluSp|SINE|Alu 21743 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 401-89 chr14 53286383 53286563 + 3 NA Intergenic Intergenic 133119 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 865-38 chr6 40202321 40202697 + 3 NA Intergenic L1MA9|LINE|L1 153497 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 399-341 chrX 97981308 97981542 + 3 NA Intergenic L2a|LINE|L2 -416890 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 655-137 chr9 34829442 34829866 + 3 NA TTS (NR_024481) TTS (NR_024481) 8932 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 573-122 chr4 10208703 10209050 + 3 NA Intergenic Intergenic -92077 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 458-41 chr11 90693362 90693611 + 3 NA intron (NR_104190, intron 3 of 6) THE1C-int|LTR|ERVL-MaLR -137629 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 504-35 chr11 41615498 41615824 + 3 NA Intergenic Intergenic -98907 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 778-30 chr17 60556999 60557445 + 3 NA Intergenic Intergenic -7324 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 456-7 chr1 76650420 76650707 + 3 NA Intergenic L1MD2|LINE|L1 128704 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 745-54 chr5 83028675 83029095 + 3 NA Intergenic Intergenic 35452 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 703-46 chr2 104847469 104847839 + 3 NA intron (NR_037883, intron 1 of 3) intron (NR_037883, intron 1 of 3) 3822 NR_131235 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 830-23 chr2 49532536 49533076 + 3 NA Intergenic L1M4|LINE|L1 -378279 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 727-87 chr9 27920133 27920488 + 3 NA Intergenic Intergenic -346444 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 360-461 chr8 83502077 83502259 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 98410 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 501-59 chr13 53722719 53722963 + 3 NA Intergenic L1M3de|LINE|L1 -92578 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 892-11 chr11 100443443 100443939 + 3 NA Intergenic Intergenic -243597 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 685-23 chr14 88908712 88909206 + 3 NA Intergenic Intergenic 84308 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 628-86 chr3 34829441 34829694 + 3 NA Intergenic MIR|SINE|MIR 564456 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 603-100 chr21 16242545 16242813 + 3 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 42089 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 679-23 chr12 37850848 37851245 + 3 NA Intergenic ALR/Alpha|Satellite|centr -465728 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 581-123 chr4 149665137 149665432 + 3 NA intron (NM_001363507, intron 7 of 13) L1MA6|LINE|L1 150559 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 481-200 chr3 88853998 88854210 + 3 NA Intergenic Intergenic -253517 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 537-281 chrX 66188823 66189122 + 3 NA intron (NM_001367233, intron 5 of 20) intron (NM_001367233, intron 5 of 20) 21222 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 878-27 chr2 71919988 71920528 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 227604 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 393-371 chr8 132378563 132378782 + 3 NA intron (NM_004519, intron 1 of 14) MLT1L|LTR|ERVL-MaLR 68590 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 266-453 chr9 96121097 96121190 + 3 NA Intergenic HAL1|LINE|L1 -4732 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 412-180 chr20 7550594 7550843 + 3 NA Intergenic L1MB1|LINE|L1 179110 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 470-139 chr2 150687146 150687527 + 3 NA Intergenic L1ME3E|LINE|L1 58439 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 641-107 chr8 43854262 43854556 + 3 NA Intergenic ALR/Alpha|Satellite|centr 561967 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 608-50 chr16 51485206 51485504 + 3 NA Intergenic L1M4|LINE|L1 -277164 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 517-123 chr2 33386382 33386568 + 3 NA intron (NM_206943, intron 31 of 33) intron (NM_206943, intron 31 of 33) -32041 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 478-132 chr2 16867224 16867409 + 3 NA Intergenic AluJb|SINE|Alu -201482 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 511-236 chr6 120805572 120805865 + 3 NA Intergenic Intergenic 528762 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 512-119 chr2 59496986 59497276 + 3 NA Intergenic L1PA16|LINE|L1 279423 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 462-172 chr3 26799381 26799647 + 3 NA Intergenic Intergenic 104957 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 901-5 chr10 48282756 48283292 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -8328 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 443-190 chr22 19670756 19670957 + 3 NA Intergenic Intergenic -43647 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 550-35 chr10 71899485 71899676 + 3 NA Intergenic L1M1|LINE|L1 -48329 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 832-48 chr9 84350908 84351400 + 3 NA intron (NM_022127, intron 1 of 18) Tigger3b|DNA|TcMar-Tigger -10396 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 537-132 chr2 172511207 172511578 + 3 NA Intergenic Intergenic -43981 NR_103731 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 334-329 chr3 882909 883122 + 3 NA Intergenic Intergenic -210009 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 443-150 chr2 98350159 98350336 + 3 NA intron (NM_001079878, intron 1 of 6) MIR|SINE|MIR 3791 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 445-260 chr7 111238711 111238972 + 3 NA intron (NM_032549, intron 3 of 5) MIRb|SINE|MIR 147714 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 394-349 chrX 77463730 77463883 + 3 NA Intergenic L1MA7|LINE|L1 16417 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 448-9 chr1 101591553 101591729 + 3 NA Intergenic Intergenic 255439 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 575-81 chr2 49095382 49095628 + 3 NA intron (NM_000145, intron 1 of 9) L1MB7|LINE|L1 35902 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 361-464 chr8 134614174 134614375 + 3 NA intron (NM_020863, intron 3 of 15) intron (NM_020863, intron 3 of 15) 16203 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 631-35 chr14 25198222 25198570 + 3 NA Intergenic Intergenic -148099 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 499-162 chr3 30216699 30216994 + 3 NA Intergenic Intergenic -282690 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 554-86 chr16 51682531 51682863 + 3 NA Intergenic FLAM_A|SINE|Alu -79822 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 754-74 chr6 155386349 155386699 + 3 NA Intergenic MER58C|DNA|hAT-Charlie 69315 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 730-48 chr3 112869759 112870253 + 3 NA Intergenic L1MA3|LINE|L1 -24056 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 480-194 chr3 113416456 113416731 + 3 NA exon (NM_018338, exon 6 of 21) exon (NM_018338, exon 6 of 21) 12595 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 904-38 chr7 64139809 64140476 + 3 NA Intergenic MLT2D|LTR|ERVL -67061 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 362-185 chr17 15433255 15433400 + 3 NA Intergenic Intergenic 34294 NM_001204477 284040 Hs.164595 NM_173622 ENSG00000239704 CDRT4 - CMT1A duplicated region transcript 4 protein-coding 316-505 chr7 14777938 14778168 + 3 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 63397 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 340-467 chr6 410331 410586 + 3 NA non-coding (NR_046000, exon 10 of 10) non-coding (NR_046000, exon 10 of 10) 18706 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 424-50 chr12 18590853 18591169 + 3 NA intron (NM_001288774, intron 29 of 32) MamRep605|LTR?|LTR? 146498 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 780-67 chr8 125654301 125654667 + 3 NA Intergenic Intergenic 222275 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 493-28 chr10 39158072 39158318 + 3 NA Intergenic ALR/Alpha|Satellite|centr 461599 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 538-223 chr7 91386033 91386364 + 3 NA Intergenic Intergenic 121765 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 335-104 chr11 101174187 101174336 + 3 NA Intergenic L2b|LINE|L2 -44448 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 503-15 chr1 118792742 118792939 + 3 NA Intergenic L1MA10|LINE|L1 195503 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 481-4 chr1 82494188 82494454 + 3 NA Intergenic Intergenic -408862 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 331-123 chr12 75408674 75408868 + 3 NA intron (NR_072995, intron 2 of 6) L1ME3G|LINE|L1 17682 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 627-128 chrX 82269173 82269501 + 3 NA Intergenic Intergenic 1067235 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 642-102 chr6 142837948 142838269 + 3 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 107068 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 583-55 chr14 51861913 51862279 + 3 NA intron (NM_001243774, intron 1 of 2) intron (NM_001243774, intron 1 of 2) 1484 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 370-320 chr3 140293672 140293847 + 3 NA intron (NM_022131, intron 2 of 16) intron (NM_022131, intron 2 of 16) 215030 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 439-181 chr3 61930118 61930324 + 3 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 368650 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 476-219 chr5 63280204 63280453 + 3 NA Intergenic L1MB7|LINE|L1 681964 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 889-28 chr4 77553874 77554442 + 3 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 42405 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 453-252 chr7 36943536 36943763 + 3 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -24217 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 452-159 chr21 23551124 23551321 + 3 NA Intergenic Intergenic -166387 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 605-85 chr4 60028466 60028695 + 3 NA Intergenic Intergenic -894039 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 1468-5 chr7 79384409 79385498 + 3 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -68004 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 445-205 chr4 104603325 104603513 + 3 NA intron (NR_125926, intron 1 of 9) L1MA9|LINE|L1 -108525 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 346-47 chr10 58847542 58847702 + 3 NA Intergenic L2b|LINE|L2 132607 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 608-79 chr2 194388491 194388889 + 3 NA intron (NR_110222, intron 4 of 5) intron (NR_110222, intron 4 of 5) 44421 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 449-188 chr4 69472574 69472867 + 3 NA Intergenic L1M4|LINE|L1 23185 NM_001297615 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 825-50 chr7 65406495 65406919 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 32852 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 449-299 chrX 80141117 80141312 + 3 NA Intergenic Intergenic 118154 NM_001303475 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 410-200 chr3 106650286 106650437 + 3 NA Intergenic MLT2B3|LTR|ERVL 590277 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 628-144 chrX 102956575 102956931 + 3 NA intron (NR_146589, intron 10 of 11) L1PA15|LINE|L1 19481 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 296-260 chr20 6920621 6920764 + 3 NA Intergenic MIR3|SINE|MIR 153006 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 505-284 chr7 23250173 23250389 + 3 NA intron (NM_001005340, intron 1 of 10) L1MD1|LINE|L1 3506 NM_001005340 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 533-70 chr16 17592043 17592314 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -121218 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 390-19 chr1 184448541 184448702 + 3 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 61592 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 392-102 chr16 8130873 8131127 + 3 NA Intergenic Intergenic 458838 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 598-9 chr1 170387137 170387494 + 3 NA Intergenic L1PA15|LINE|L1 -103107 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 1135-8 chr8 69205327 69205842 + 3 NA Intergenic L2c|LINE|L2 -101394 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 534-52 chr11 112985202 112985454 + 3 NA intron (NM_181351, intron 1 of 18) L1MA9|LINE|L1 -21868 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 429-242 chr5 110981710 110981917 + 3 NA Intergenic L1M1|LINE|L1 -88267 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 404-89 chr13 62282142 62282393 + 3 NA Intergenic Intergenic -39038 NR_149075 106144607 Hs.562580 NR_149075 ENSG00000227611 LINC01074 - long intergenic non-protein coding RNA 1074 ncRNA 500-219 chr5 23338769 23338986 + 3 NA Intergenic Intergenic -168732 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 883-16 chr19 27658632 27659195 + 3 NA Intergenic HSAT4|Satellite|centr -134518 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 496-168 chr22 27935319 27935615 + 3 NA intron (NR_026963, intron 2 of 4) Tigger2b_Pri|DNA|TcMar-Tigger -14855 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 445-195 chr4 38824317 38824520 + 3 NA 3' UTR (NM_006068, exon 2 of 2) 3' UTR (NM_006068, exon 2 of 2) -19627 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 336-412 chr4 57674907 57675086 + 3 NA Intergenic Intergenic 249124 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 648-5 chr1 162368782 162369042 + 3 NA 3' UTR (NM_001164757, exon 10 of 10) 3' UTR (NM_001164757, exon 10 of 10) 5929 NM_001126060 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 497-184 chr3 114170429 114170637 + 3 NA intron (NM_000796, intron 2 of 6) intron (NM_000796, intron 2 of 6) 8243 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 613-100 chr5 7167866 7168196 + 3 NA Intergenic Intergenic 101323 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 495-44 chr12 26504851 26505134 + 3 NA intron (NM_002223, intron 37 of 56) L1ME3F|LINE|L1 309419 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 567-207 chr9 122619247 122619569 + 3 NA Intergenic L1M4|LINE|L1 4670 NM_012364 158131 Hs.684864 NM_012364 ENSG00000165202 OR1Q1 HSTPCR106|OR1Q2|OR1Q3|OR9-25|OR9-A|OST226|OST226OR9-A|TPCR106 olfactory receptor family 1 subfamily Q member 1 protein-coding 401-254 chr5 29649272 29649470 + 3 NA Intergenic Zaphod3|DNA|hAT-Tip100 -231189 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 650-97 chr5 124460441 124460869 + 3 NA Intergenic Intergenic -22135 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 434-210 chr4 69079692 69079926 + 3 NA intron (NM_001349568, intron 1 of 6) intron (NM_001349568, intron 1 of 6) -16665 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 671-103 chr8 117088717 117089087 + 3 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -46093 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 426-142 chr2 122440867 122441097 + 3 NA Intergenic L1ME3A|LINE|L1 632499 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 463-42 chr10 75444712 75444877 + 3 NA intron (NM_001305581, intron 2 of 6) L1ME4a|LINE|L1 13170 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 333-272 chr2 153101676 153101864 + 3 NA Intergenic Intergenic 376992 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 672-109 chr8 64330526 64330879 + 3 NA intron (NR_125826, intron 1 of 4) L1ME4b|LINE|L1 37856 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 268-274 chr4 56636414 56636583 + 3 NA Intergenic MER34B|LTR|ERV1 20024 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 643-133 chr8 129221461 129221807 + 3 NA intron (NR_033916, intron 2 of 2) L1ME2|LINE|L1 19606 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 480-151 chr2 106365677 106365973 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -3920 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 384-256 chr4 43522198 43522450 + 3 NA Intergenic L2b|LINE|L2 -29781 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 541-110 chr2 39481868 39482107 + 3 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 44571 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 872-32 chr3 112382591 112383125 + 3 NA Intergenic Intergenic 49702 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 338-262 chr2 76618008 76618151 + 3 NA Intergenic L1MA4A|LINE|L1 -367886 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 596-119 chr3 36330476 36330722 + 3 NA Intergenic Intergenic -49888 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 240-200 chr19 11680056 11680173 + 3 NA intron (NR_028594, intron 1 of 2) MSTA-int|LTR|ERVL-MaLR 6116 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 571-38 chr12 83281031 83281268 + 3 NA Intergenic Intergenic 593994 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 472-190 chr20 63386747 63386941 + 3 NA Intergenic Intergenic -25448 NM_000744 1137 Hs.10734 NM_000744 ENSG00000101204 CHRNA4 BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding 251-271 chr4 89473487 89473595 + 3 NA Intergenic Intergenic -165741 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 757-61 chr8 63869752 63870262 + 3 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 100577 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 591-80 chr2 182530696 182531033 + 3 NA Intergenic L1MDa|LINE|L1 -8019 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 368-134 chr14 25114737 25114874 + 3 NA Intergenic Intergenic -64508 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 499-149 chr20 53101981 53102183 + 3 NA intron (NM_173485, intron 1 of 2) UCON55|DNA|TcMar-Tigger -83201 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 916-39 chrX 8611907 8612424 + 3 NA intron (NM_000216, intron 3 of 13) L1MEc|LINE|L1 119972 NM_000216 3730 Hs.521869 NM_000216 ENSG00000011201 ANOS1 ADMLX|HH1|HHA|KAL|KAL1|KALIG-1|KMS|WFDC19 anosmin 1 protein-coding 454-61 chr11 121092093 121092444 + 3 NA Intergenic Intergenic -10398 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 550-164 chr4 92922854 92923206 + 3 NA intron (NM_001286838, intron 2 of 14) L1ME3A|LINE|L1 618631 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 256-349 chr6 678169 678384 + 3 NA intron (NR_073064, intron 2 of 29) MIRc|SINE|MIR 14863 NM_018303 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 480-142 chr2 50385647 50385842 + 3 NA intron (NM_001330093, intron 17 of 22) L3|LINE|CR1 -37988 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1060-19 chr5 164129273 164129792 + 3 NA Intergenic L2b|LINE|L2 337870 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 747-66 chr7 138989359 138989837 + 3 NA Intergenic L2c|LINE|L2 -8209 NM_001164665 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 637-126 chrX 91363635 91363990 + 3 NA Intergenic L1ME3A|LINE|L1 -71027 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 565-59 chr17 56641393 56641644 + 3 NA Intergenic Intergenic 47819 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 1193-5 chr18 71505841 71506700 + 3 NA Intergenic Intergenic 72686 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 483-22 chr10 23559441 23559638 + 3 NA Intergenic L2c|LINE|L2 120270 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 309-477 chr6 64498229 64498403 + 3 NA intron (NM_001292009, intron 26 of 43) MIR|SINE|MIR 691480 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 734-36 chr2 51890618 51891085 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -479797 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 409-196 chr3 39882885 39883063 + 3 NA intron (NM_001284424, intron 1 of 15) L1MEg|LINE|L1 73314 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 366-276 chr3 59968438 59968590 + 3 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 112395 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 429-326 chr9 77300819 77300980 + 3 NA intron (NM_001018038, intron 33 of 68) L2a|LINE|L2 -122982 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 479-186 chr5 17775252 17775462 + 3 NA Intergenic L1MD|LINE|L1 -31917 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 484-285 chr9 90366822 90367133 + 3 NA intron (NR_109795, intron 2 of 2) L1M5|LINE|L1 66512 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 595-41 chr12 73450349 73450675 + 3 NA Intergenic Intergenic 291322 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 482-61 chr12 14532812 14533088 + 3 NA intron (NM_024829, intron 6 of 10) intron (NM_024829, intron 6 of 10) -34782 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 816-27 chr2 172762786 172763286 + 3 NA intron (NM_007023, intron 1 of 30) intron (NM_007023, intron 1 of 30) -26830 NR_026995 91149 Hs.711021 NR_026995 ENSG00000228016 RAPGEF4-AS1 - RAPGEF4 antisense RNA 1 ncRNA 548-230 chr8 69316392 69316579 + 3 NA Intergenic Intergenic 131759 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 344-245 chr2 103073369 103073520 + 3 NA Intergenic L1M1|LINE|L1 -89015 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 329-600 chr8 142849376 142849536 + 3 NA Intergenic L1M4|LINE|L1 14655 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 300-212 chr2 135022852 135023053 + 3 NA intron (NM_001282883, intron 1 of 7) intron (NM_001282883, intron 1 of 7) 697 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 491-38 chr11 95972745 95972988 + 3 NA Intergenic Intergenic -48659 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 629-95 chr4 180707103 180707432 + 3 NA Intergenic L1MEg|LINE|L1 451882 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 456-52 chr11 115059513 115059766 + 3 NA Intergenic Intergenic -273938 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 575-35 chr11 128089415 128089692 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -119213 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 498-29 chr10 58605480 58605743 + 3 NA intron (NM_001080512, intron 1 of 20) MER2|DNA|TcMar-Tigger 92739 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 267-217 chr2 195751163 195751257 + 3 NA intron (NM_018897, intron 63 of 64) intron (NM_018897, intron 63 of 64) 93984 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 484-88 chr16 76935299 76935502 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger 66464 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 467-197 chr4 11859857 11860115 + 3 NA Intergenic Intergenic 76808 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 754-53 chr3 103217286 103217668 + 3 NA Intergenic MIR|SINE|MIR 306639 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 676-99 chr6 9756294 9756789 + 3 NA Intergenic L3|LINE|CR1 -647961 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 538-59 chr12 133118683 133119027 + 3 NA Intergenic Intergenic 11618 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 493-104 chr17 11107092 11107312 + 3 NA Intergenic Intergenic -134011 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 267-273 chr3 176037651 176037809 + 3 NA Intergenic Intergenic -206821 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 833-35 chr7 18079012 18079371 + 3 NA Intergenic L1MA8|LINE|L1 -7634 NM_001321871 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 766-36 chr2 116481294 116481675 + 3 NA Intergenic Intergenic 1137669 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 722-69 chr6 149629028 149629531 + 3 NA intron (NM_001204076, intron 3 of 7) MLT1A|LTR|ERVL-MaLR 19435 NM_007044 11104 Hs.450175 NM_007044 ENSG00000186625 KATNA1 - katanin catalytic subunit A1 protein-coding 739-19 chr14 51785586 51786085 + 3 NA Intergenic L1PREC2|LINE|L1 68552 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 1130-5 chr2 7353677 7354530 + 3 NA Intergenic Intergenic -67158 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 878-47 chr7 132193115 132193467 + 3 NA intron (NM_020911, intron 14 of 31) MSTD|LTR|ERVL-MaLR -67570 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 293-460 chr8 131726755 131726874 + 3 NA Intergenic Intergenic -177279 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 554-190 chr7 37378471 37378723 + 3 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) -24929 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 547-76 chr16 46787256 46787474 + 3 NA Intergenic AluSz6|SINE|Alu -24119 NM_001308301 91807 Hs.130465 NM_182493 ENSG00000140795 MYLK3 MLCK|MLCK2|caMLCK myosin light chain kinase 3 protein-coding 1335-2 chr2 98674588 98675214 + 3 NA intron (NM_012214, intron 4 of 15) intron (NM_012214, intron 4 of 15) -11428 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 438-165 chr3 21578641 21578822 + 3 NA intron (NM_024697, intron 2 of 7) L1MA5|LINE|L1 35942 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 483-128 chr2 151247441 151247624 + 3 NA TTS (NM_198557) TTS (NM_198557) 14331 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 684-120 chr8 113718371 113718818 + 3 NA Intergenic HERV16-int|LTR|ERVL -281655 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 480-321 chrX 64948667 64948832 + 3 NA intron (NM_001178032, intron 1 of 4) MER57-int|LTR|ERV1 27701 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 632-85 chr4 75080373 75080694 + 3 NA Intergenic Intergenic 4175 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 344-199 chr18 7982666 7982865 + 3 NA intron (NM_002845, intron 7 of 30) Tigger3b|DNA|TcMar-Tigger 384269 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 519-237 chr8 89212491 89212684 + 3 NA Intergenic Intergenic 545124 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 494-221 chr5 30629824 30630046 + 3 NA Intergenic Intergenic -563751 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1077-16 chr6 153688387 153689006 + 3 NA Intergenic L2b|LINE|L2 -321800 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 657-14 chr10 62325025 62325355 + 3 NA Intergenic L1PREC2|LINE|L1 -48967 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 459-145 chr2 114842865 114843127 + 3 NA intron (NM_001321910, intron 2 of 26) L1MEd|LINE|L1 -9448 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 786-43 chr3 97691300 97691801 + 3 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -72971 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 658-9 chr1 221692939 221693297 + 3 NA Intergenic Intergenic 43782 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 382-418 chr8 112385829 112386026 + 3 NA intron (NM_001363185, intron 32 of 66) MLT1D|LTR|ERVL-MaLR -257566 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 737-18 chr12 42913747 42914182 + 3 NA Intergenic MIRb|SINE|MIR 221748 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 357-447 chr8 104163924 104164082 + 3 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -59332 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 519-253 chr9 82143354 82143621 + 3 NA Intergenic Intergenic 154715 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 655-12 chr1 195002149 195002501 + 3 NA Intergenic Intergenic 1086390 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 603-178 chrX 88593574 88593896 + 3 NA Intergenic Intergenic -153490 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 571-25 chr10 130776055 130776338 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 186472 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 344-6 chr1 36809555 36809702 + 3 NA intron (NM_000831, intron 13 of 15) intron (NM_000831, intron 13 of 15) 224887 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 490-86 chr14 49052139 49052452 + 3 NA Intergenic Intergenic 534085 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 511-189 chr4 35293836 35294144 + 3 NA Intergenic Intergenic 949949 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 215-293 chr7 21007761 21007888 + 3 NA intron (NR_126381, intron 2 of 5) L1MA4|LINE|L1 172393 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 277-30 chr1 213601210 213601350 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -323469 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 922-40 chr8 136922102 136922595 + 3 NA Intergenic Intergenic 391550 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 456-171 chr2 186300931 186301210 + 3 NA Intergenic Intergenic -185190 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 467-6 chr1 63680267 63680445 + 3 NA Intergenic Intergenic 57140 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 542-244 chrX 65273486 65273878 + 3 NA Intergenic L1M4c|LINE|L1 -215053 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 272-397 chr6 132177620 132177766 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 43715 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 1396-3 chr10 80749062 80749759 + 3 NA Intergenic Intergenic 99613 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 907-25 chr7 53919428 53919842 + 3 NA Intergenic MER89-int|LTR|ERV1 -107704 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 779-41 chr5 6861446 6861926 + 3 NA Intergenic L1ME4b|LINE|L1 -33765 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 465-238 chr5 124844539 124844750 + 3 NA Intergenic MIR3|SINE|MIR -99532 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 552-152 chr4 53790031 53790309 + 3 NA Intergenic LTR86A2|LTR|ERVL 94269 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 404-25 chr10 8737633 8737819 + 3 NA Intergenic Intergenic -143335 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 291-154 chr15 93538228 93538406 + 3 NA Intergenic L1MC3|LINE|L1 -318243 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 601 chr1 38617505 38617835 + 3 NA Intergenic MIRc|SINE|MIR 142474 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 336-399 chr4 39810479 39810630 + 3 NA Intergenic Intergenic 112418 NM_001312646 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 852-37 chr4 21220204 21220541 + 3 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 83534 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 521-204 chr5 130643824 130644078 + 3 NA Intergenic L1MA2|LINE|L1 521305 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 451-215 chr7 47529934 47530226 + 3 NA intron (NM_022748, intron 1 of 30) L1M5|LINE|L1 52031 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 563-40 chr12 66975644 66975934 + 3 NA Intergenic L2a|LINE|L2 120495 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 448-244 chr6 118337660 118337869 + 3 NA Intergenic AluSq|SINE|Alu -163609 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 537-182 chr4 150632527 150632718 + 3 NA intron (NM_001367550, intron 37 of 56) intron (NM_001367550, intron 37 of 56) 50471 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 450-313 chr8 131490810 131491108 + 3 NA Intergenic L2a|LINE|L2 -413134 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 453-78 chr15 81017332 81017586 + 3 NA Intergenic AluJr4|SINE|Alu 16536 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 452-104 chr16 78998515 78998731 + 3 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 602114 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 839-45 chr7 10759127 10759751 + 3 NA intron (NR_147499, intron 1 of 2) LTR10B1|LTR|ERV1 20505 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 642-40 chr16 50767703 50767981 + 3 NA intron (NM_015247, intron 7 of 19) intron (NM_015247, intron 7 of 19) 25537 NR_130462 100422972 NR_130462 ENSG00000264947 MIR3181 - microRNA 3181 ncRNA 478-313 chrUn_KI270442v1 36239 36411 + 3 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 462-69 chr12 118928070 118928339 + 3 NA Intergenic L2a|LINE|L2 -53337 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 908-22 chr20 32993316 32993887 + 3 NA intron (NM_080675, intron 8 of 12) L1MEg|LINE|L1 10832 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 657-78 chr5 37866373 37866778 + 3 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 26137 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 927-3 chr12 24659707 24660269 + 3 NA Intergenic L1MA3|LINE|L1 -75820 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 597-91 chr3 87537682 87537992 + 3 NA Intergenic Intergenic -254869 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 456-331 chr8 136858936 136859135 + 3 NA intron (NR_147196, intron 4 of 5) MER65C|LTR|ERV1 328237 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 198-174 chr3 171908438 171908537 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -7747 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 962-12 chr22 28284202 28284717 + 3 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -175410 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 636-145 chr8 88847400 88847690 + 3 NA Intergenic Intergenic -520062 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 239-30 chr10 34596267 34596360 + 3 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 218983 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 439-273 chr7 109974245 109974522 + 3 NA Intergenic Intergenic -14170 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 364-176 chr17 78011782 78011983 + 3 NA intron (NM_018996, intron 2 of 20) L1ME2z|LINE|L1 7645 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 261-61 chr11 30073374 30073475 + 3 NA Intergenic MIRc|SINE|MIR -56394 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 716-23 chr13 97491654 97492034 + 3 NA Intergenic L1MEg|LINE|L1 57675 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 320-580 chr8 137731903 137732054 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR -318390 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 645-114 chr7 68330143 68330529 + 3 NA Intergenic Intergenic 310083 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 454-151 chr2 64185533 64185724 + 3 NA non-coding (NR_033837, exon 6 of 6) non-coding (NR_033837, exon 6 of 6) 19857 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 521-226 chr6 170195431 170195708 + 3 NA Intergenic L1MD1|LINE|L1 34927 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 371-364 chr7 53913202 53913388 + 3 NA Intergenic Intergenic -101364 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 988-22 chr3 98419063 98419894 + 3 NA Intergenic L1M2|LINE|L1 28812 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 970-17 chr4 59990669 59991166 + 3 NA Intergenic Intergenic -931702 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 413-255 chr5 178872242 178872422 + 3 NA intron (NM_058230, intron 4 of 4) L1MD1|LINE|L1 12379 NM_058230 117608 Hs.724051 NM_058230 ENSG00000178338 ZNF354B KID2 zinc finger protein 354B protein-coding 684-90 chr5 2534421 2534792 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -177985 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 590-45 chr14 46113075 46113349 + 3 NA intron (NR_102702, intron 1 of 3) THE1C-int|LTR|ERVL-MaLR 49053 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 471-132 chr2 71229442 71229616 + 3 NA Intergenic L1MEc|LINE|L1 -2426 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 1003-16 chr5 46048900 46049458 + 3 NA Intergenic ALR/Alpha|Satellite|centr -352799 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 558-69 chr16 80454149 80454522 + 3 NA intron (NR_120307, intron 2 of 5) L1ME4a|LINE|L1 -86399 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 565-72 chr2 15251381 15251627 + 3 NA intron (NR_052013, intron 44 of 50) MER41A|LTR|ERV1 309830 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 531-25 chr10 62587894 62588186 + 3 NA intron (NM_199452, intron 1 of 6) L1ME1|LINE|L1 67592 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 747-20 chr14 54467313 54467819 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 21414 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 437-34 chr10 122360642 122360798 + 3 NA Intergenic L1MD2|LINE|L1 -13988 NM_001330178 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 516-97 chr16 79956513 79956699 + 3 NA Intergenic Intergenic 161357 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 693-43 chr16 83169819 83170150 + 3 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -179686 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 635-57 chr2 168797976 168798289 + 3 NA intron (NM_001171631, intron 2 of 20) (TATTAT)n|Simple_repeat|Simple_repeat -4458 NM_001039724 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 480-135 chr2 8029199 8029398 + 3 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -52484 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 811-40 chr5 129985841 129986321 + 3 NA intron (NM_175856, intron 2 of 2) L1PA15|LINE|L1 81616 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 298-17 chr1 162388362 162388516 + 3 NA Intergenic Intergenic 6711 NM_001085375 400793 Hs.447011 NM_001085375 ENSG00000239887 C1orf226 - chromosome 1 open reading frame 226 protein-coding 620-136 chr7 140984742 140985092 + 3 NA Intergenic Intergenic 29762 NM_016071 51650 Hs.416207 NM_016071 ENSG00000090263 MRPS33 CGI-139|MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 1330 chr12 42725671 42726294 + 3 NA Intergenic Intergenic 33766 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 721-86 chr8 142890915 142891466 + 3 NA Intergenic L1MA2|LINE|L1 -11370 NM_000497 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 523-214 chr5 28168082 28168405 + 3 NA Intergenic Intergenic 119422 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 661-42 chr19 51885918 51886266 + 3 NA intron (NM_001370450, intron 1 of 5) L1ME3|LINE|L1 1844 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 331-415 chr5 35734214 35734408 + 3 NA intron (NM_024867, intron 21 of 36) L2a|LINE|L2 116448 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 200-160 chr20 57244486 57244594 + 3 NA intron (NM_001719, intron 1 of 6) MIRb|SINE|MIR 22101 NM_001719 655 Hs.473163 NM_001719 ENSG00000101144 BMP7 OP-1 bone morphogenetic protein 7 protein-coding 635-104 chr7 108928391 108928714 + 3 NA Intergenic L1PA11|LINE|L1 -43965 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 854-20 chr17 68648036 68648598 + 3 NA intron (NR_110825, intron 2 of 4) L1ME1|LINE|L1 20163 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 513-105 chr17 74591600 74591812 + 3 NA intron (NM_001302809, intron 2 of 2) L1MB7|LINE|L1 577 NM_001115152 100131439 Hs.531099 NM_001115152 ENSG00000204345 CD300LD CD300D|CLM-4|CMRF35-A4|CMRF35A4 CD300 molecule like family member d protein-coding 485-134 chr2 77318216 77318448 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 204044 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 481-105 chr15 95231265 95231570 + 3 NA Intergenic HAL1|LINE|L1 95683 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 455 chr1 17158140 17158320 + 3 NA Intergenic HY3|scRNA|scRNA -31559 NR_148993 400743 Hs.522935 NR_148993 ENSG00000204362 LINC02783 - long intergenic non-protein coding RNA 2783 ncRNA 418-213 chr5 51355323 51355585 + 3 NA Intergenic Intergenic 27878 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 932-30 chr7 62779521 62780056 + 3 NA Intergenic ALR/Alpha|Satellite|centr 524268 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 482-277 chr8 118170855 118171085 + 3 NA intron (NR_146234, intron 4 of 5) L1MB8|LINE|L1 -59151 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 515-267 chr8 120132314 120132518 + 3 NA intron (NM_021110, intron 1 of 47) L1PA16|LINE|L1 7314 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 296-343 chr4 79134071 79134271 + 3 NA intron (NR_038342, intron 3 of 5) L1PA14|LINE|L1 162423 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 487-313 chrX 146567773 146568049 + 3 NA Intergenic L2|LINE|L2 -241860 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 570-164 chr5 128531800 128532132 + 3 NA intron (NM_001999, intron 2 of 64) intron (NM_001999, intron 2 of 64) 6279 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 325-501 chr7 50381812 50381979 + 3 NA intron (NM_001220771, intron 3 of 3) (TCTCTC)n|Simple_repeat|Simple_repeat 62847 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 885-10 chr19 28779519 28779892 + 3 NA Intergenic L1P4a|LINE|L1 -52011 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 546-96 chr19 16913277 16913601 + 3 NA intron (NM_015692, intron 29 of 41) MLT1A|LTR|ERVL-MaLR -16492 NR_147452 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 517-118 chr2 104089 104348 + 3 NA Intergenic L1MA4A|LINE|L1 -57713 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 668-96 chr7 49214830 49215162 + 3 NA Intergenic L1MA9|LINE|L1 290449 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 656-11 chr1 209243053 209243328 + 3 NA Intergenic Intergenic -82266 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 464-105 chr19 15720990 15721179 + 3 NA Intergenic L2b|LINE|L2 -6940 NM_013939 26538 Hs.247694 NM_013939 ENSG00000171942 OR10H2 - olfactory receptor family 10 subfamily H member 2 protein-coding 416-174 chr2 88073657 88073829 + 3 NA intron (NM_001330364, intron 1 of 8) L1ME4a|LINE|L1 5918 NM_001330364 150572 Hs.516176 NM_198274 ENSG00000115593 SMYD1 BOP|KMT3D|ZMYND18|ZMYND22 SET and MYND domain containing 1 protein-coding 337-342 chr3 28549121 28549332 + 3 NA Intergenic Intergenic -26052 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 567-75 chr18 47438004 47438211 + 3 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 57611 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 511-172 chr3 72464346 72464654 + 3 NA Intergenic MER20|DNA|hAT-Charlie -17877 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 243-35 chr10 28345951 28346067 + 3 NA Intergenic Intergenic -42945 NM_001318170 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 655-24 chr11 105532618 105533148 + 3 NA Intergenic L2c|LINE|L2 -77190 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 649-9 chr10 117958002 117958394 + 3 NA Intergenic L1MD2|LINE|L1 -88623 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 407-302 chr7 78756462 78756724 + 3 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -252395 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 540-138 chr22 49688624 49688940 + 3 NA Intergenic Intergenic -31263 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 442-245 chr6 40219790 40220049 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 136087 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 991 chr1 54643584 54644184 + 3 NA intron (NM_001291332, intron 1 of 21) L1MDa|LINE|L1 2098 NM_001039464 374977 Hs.412482 NM_198547 ENSG00000184313 MROH7 C1orf175|HEATR8 maestro heat like repeat family member 7 protein-coding 466-163 chr22 34020504 34020666 + 3 NA Intergenic Intergenic -97697 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 388-347 chr8 89079541 89079682 + 3 NA Intergenic L2b|LINE|L2 678100 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 374-294 chr5 8566464 8566703 + 3 NA Intergenic Intergenic 105658 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 546-50 chr12 16084950 16085215 + 3 NA Intergenic AluY|SINE|Alu 173750 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 510-183 chr3 60165580 60165865 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -84813 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 535-96 chr16 50342748 50343116 + 3 NA intron (NM_013263, intron 5 of 16) intron (NM_013263, intron 5 of 16) 26056 NM_013263 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 399-248 chr5 55825106 55825248 + 3 NA Intergenic Intergenic -26180 NM_001242637 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 1489-2 chr10 105681539 105682238 + 3 NA intron (NR_120625, intron 3 of 3) L1MCb|LINE|L1 138445 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 526-165 chr3 20801731 20801988 + 3 NA Intergenic L1MA8|LINE|L1 459391 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 488-281 chr8 144909655 144909852 + 3 NA Intergenic L1M4|LINE|L1 -7576 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 295-32 chr1 227667635 227667799 + 3 NA intron (NR_102302, intron 5 of 5) Charlie13a|DNA|hAT-Charlie 29990 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 592 chr1 8109166 8109398 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -82973 NM_018948 54206 Hs.605445 NM_018948 ENSG00000116285 ERRFI1 GENE-33|MIG-6|MIG6|RALT ERBB receptor feedback inhibitor 1 protein-coding 737-59 chr4 45740182 45740578 + 3 NA Intergenic L1PREC2|LINE|L1 383674 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 361-154 chr15 56610671 56610901 + 3 NA Intergenic L1MEf|LINE|L1 123300 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 668-42 chr17 70849867 70850321 + 3 NA Intergenic Intergenic 352085 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 580-193 chr8 33952421 33952737 + 3 NA Intergenic Intergenic -352473 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 999-9 chr2 204433260 204433724 + 3 NA Intergenic Intergenic -111983 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 1014-5 chr12 61478135 61478807 + 3 NA Intergenic Intergenic 714368 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 562-14 chr1 208273968 208274309 + 3 NA Intergenic Intergenic -29754 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 621-128 chr8 107161940 107162367 + 3 NA Intergenic L1MA4A|LINE|L1 174362 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 267-68 chr11 90747132 90747253 + 3 NA intron (NR_104190, intron 3 of 6) L1MB7|LINE|L1 122010 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 344-459 chr7 54467474 54467719 + 3 NA Intergenic MamRep605|LTR?|LTR? -74729 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 455-89 chr16 60991748 60992034 + 3 NA Intergenic Intergenic 63875 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 292-393 chr7 4497895 4498094 + 3 NA Intergenic L1ME3Cz|LINE|L1 -184301 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 780-4 chr1 166893958 166894319 + 3 NA Intergenic Intergenic -17874 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 492-33 chr10 116159836 116160045 + 3 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 34849 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 425-287 chr7 61772657 61772923 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1531266 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 503-296 chr8 138057638 138057968 + 3 NA intron (NR_161374, intron 1 of 7) L2c|LINE|L2 25742 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 540-159 chr4 75016887 75017176 + 3 NA intron (NM_015393, intron 2 of 3) L2a|LINE|L2 -46669 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 481-280 chr7 53439498 53439801 + 3 NA Intergenic L1MC3|LINE|L1 372282 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1049-16 chr6 51089654 51090284 + 3 NA Intergenic Intergenic 271098 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 645-125 chr8 103576053 103576505 + 3 NA intron (NM_001348497, intron 1 of 22) L1M3f|LINE|L1 -74369 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 1013-14 chr5 150884511 150885090 + 3 NA intron (NM_001346557, intron 3 of 3) L1PREC2|LINE|L1 20183 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 197-38 chr11 31523306 31523374 + 3 NA intron (NM_001288725, intron 2 of 10) intron (NM_001288725, intron 2 of 10) 13573 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 687-61 chr2 89000903 89001310 + 3 NA Intergenic MER70-int|LTR|ERVL 188736 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 568-136 chr3 94834335 94834567 + 3 NA Intergenic L1PREC2|LINE|L1 -103812 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 588-151 chr7 108930045 108930401 + 3 NA Intergenic L1PA11|LINE|L1 -45636 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 593-17 chr10 64255917 64256242 + 3 NA Intergenic Intergenic -569449 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 702-33 chr17 33808230 33808534 + 3 NA intron (NM_001094, intron 1 of 9) L1MC|LINE|L1 -274622 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 468-224 chr4 75304045 75304293 + 3 NA Intergenic LTR37B|LTR|ERV1 -49907 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 841-16 chr2 52222119 52222636 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -148271 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 432-218 chr5 19629567 19629858 + 3 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 256560 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 524-77 chr16 49287063 49287349 + 3 NA Intergenic Intergenic -5368 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 480-262 chr6 150298437 150298736 + 3 NA Intergenic Intergenic -70426 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 633-34 chr12 119459753 119460181 + 3 NA intron (NM_178499, intron 2 of 13) LTR8|LTR|ERV1 125238 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 496-62 chr12 129378836 129379142 + 3 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 170388 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 618-134 chr8 129600494 129600919 + 3 NA intron (NR_130917, intron 1 of 3) AluJb|SINE|Alu -25688 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 578-63 chr15 27067849 27068070 + 3 NA intron (NM_001270873, intron 3 of 5) LTR41|LTR|ERVL 93360 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 536-242 chr8 136316482 136316757 + 3 NA Intergenic L1MA10|LINE|L1 -214179 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 429-311 chr8 123631841 123632018 + 3 NA Intergenic L1ME3A|LINE|L1 21872 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 831-2 chr1 224013859 224014337 + 3 NA intron (NR_136593, intron 2 of 4) (AATGG)n|Simple_repeat|Simple_repeat 21368 NR_136592 100287497 Hs.568390 NR_136590 LOC100287497 - septin 7 pseudogene pseudo 435-33 chr10 64813687 64813860 + 3 NA Intergenic L2a|LINE|L2 -11755 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 295-181 chr18 8954067 8954280 + 3 NA Intergenic Intergenic -148526 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 408-299 chr6 109179499 109179705 + 3 NA intron (NR_152435, intron 1 of 45) L1MB8|LINE|L1 13771 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 509-223 chr6 132863113 132863391 + 3 NA Intergenic Intergenic 46033 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 401-285 chr6 76724924 76725093 + 3 NA Intergenic Intergenic -131385 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 1141-10 chr8 84380314 84381128 + 3 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -34763 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 492-181 chr4 10419026 10419215 + 3 NA Intergenic Intergenic 38306 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 393-212 chr3 14061176 14061329 + 3 NA intron (NR_002223, intron 1 of 2) intron (NR_002223, intron 1 of 2) 63618 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 496-248 chr6 166721030 166721344 + 3 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -93936 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 229-371 chr7 118240019 118240149 + 3 NA intron (NM_019644, intron 6 of 6) intron (NM_019644, intron 6 of 6) 15380 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 454-21 chr10 25474054 25474335 + 3 NA intron (NM_020752, intron 5 of 10) MLT1D|LTR|ERVL-MaLR -177518 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 629-4 chr1 74638760 74639006 + 3 NA intron (NM_001002912, intron 5 of 14) MLT1J|LTR|ERVL-MaLR 34909 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 428-14 chr1 186611768 186611945 + 3 NA Intergenic LTR49-int|LTR|ERV1 68567 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 532-209 chr5 119647805 119648045 + 3 NA Intergenic Intergenic 18366 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 417-29 chr10 53670514 53670769 + 3 NA Intergenic L1PA16|LINE|L1 -815589 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 674-68 chr4 93508786 93509071 + 3 NA intron (NM_001286838, intron 11 of 14) intron (NM_001286838, intron 11 of 14) -319825 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 449-210 chr5 58074461 58074724 + 3 NA Intergenic Intergenic 47749 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 487-235 chr5 85382286 85382623 + 3 NA Intergenic L1MA4|LINE|L1 -899990 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 884-33 chr3 185895889 185896303 + 3 NA Intergenic AluJb|SINE|Alu 41918 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 466-259 chr8 25694853 25695060 + 3 NA Intergenic Intergenic 235723 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 810-54 chr8 46481319 46481733 + 3 NA Intergenic ALR/Alpha|Satellite|centr 136117 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 361-365 chr5 94758165 94758394 + 3 NA intron (NM_001297777, intron 16 of 19) intron (NM_001297777, intron 16 of 19) 139610 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 347-70 chr11 37849018 37849177 + 3 NA Intergenic Intergenic -89504 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 653-91 chr4 44960507 44960875 + 3 NA Intergenic L1PA15-16|LINE|L1 -234057 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 567-61 chr15 75142761 75142963 + 3 NA Intergenic MER52-int|LTR|ERV1 -59020 NM_015492 56905 Hs.17936 NM_015492 ENSG00000167173 C15orf39 - chromosome 15 open reading frame 39 protein-coding 440-111 chr2 21537041 21537297 + 3 NA Intergenic L1ME1|LINE|L1 173483 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 460-238 chr5 46168290 46168601 + 3 NA Intergenic ALR/Alpha|Satellite|centr -472065 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 793-19 chr14 71883167 71883655 + 3 NA Intergenic MER74C|LTR|ERVL -48760 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 495-110 chr2 73436407 73436712 + 3 NA intron (NM_015120, intron 7 of 22) L1M4a2|LINE|L1 -20544 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 625-22 chr12 22353434 22353841 + 3 NA Intergenic Intergenic -18923 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 500-222 chr5 37122067 37122343 + 3 NA intron (NM_023073, intron 47 of 51) intron (NM_023073, intron 47 of 51) -126841 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 461-188 chr4 45371191 45371486 + 3 NA Intergenic Intergenic -644704 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 319-37 chr1 227155696 227155860 + 3 NA intron (NM_001366019, intron 6 of 36) HAL1|LINE|L1 162714 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 672-88 chr5 45959661 45960211 + 3 NA Intergenic ALR/Alpha|Satellite|centr -263556 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 350-239 chr2 120098823 120099031 + 3 NA intron (NM_001330307, intron 14 of 16) HAL1b|LINE|L1 85850 NM_001184937 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 406-33 chr10 33762094 33762378 + 3 NA intron (NR_038932, intron 2 of 2) MER30|DNA|hAT-Charlie 10444 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 359-105 chr12 1057776 1058011 + 3 NA intron (NR_027949, intron 2 of 15) AluSc5|SINE|Alu 30145 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 443-259 chr6 48295666 48295909 + 3 NA Intergenic L1ME3A|LINE|L1 -227098 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 857-24 chr18 60126018 60126486 + 3 NA Intergenic Intergenic 226256 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 836-54 chr6 165135713 165136217 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 173640 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 513-84 chr15 46977083 46977286 + 3 NA Intergenic L1PB1|LINE|L1 -206905 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 409-167 chr20 10528075 10528242 + 3 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 92853 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 472-18 chr1 158770668 158770922 + 3 NA Intergenic L3|LINE|CR1 -4113 NM_001005185 128372 Hs.553592 NM_001005185 ENSG00000197403 OR6N1 OR1-22 olfactory receptor family 6 subfamily N member 1 protein-coding 600-79 chr21 45214266 45214512 + 3 NA intron (NR_027674, intron 9 of 11) L1ME1|LINE|L1 -19951 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 691-90 chr8 135927424 135927902 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 470207 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 556-130 chr20 53479174 53479505 + 3 NA intron (NM_173485, intron 2 of 2) MER5A1|DNA|hAT-Charlie -73431 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 236-54 chr10 105886719 105886840 + 3 NA Intergenic L1MC3|LINE|L1 -66446 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 252-13 chr1 112096919 112097079 + 3 NA Intergenic Intergenic 106463 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 499-31 chr10 91037454 91037814 + 3 NA intron (NR_134319, intron 1 of 2) AluJr|SINE|Alu 4468 NR_134319 105378430 Hs.512240 NR_134319 LOC105378430 - uncharacterized LOC105378430 ncRNA 490-16 chr1 106365597 106365903 + 3 NA Intergenic Intergenic -337497 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 702-65 chr3 112395809 112396112 + 3 NA Intergenic Intergenic 62804 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 698-41 chr2 150776994 150777341 + 3 NA Intergenic L1MEc|LINE|L1 148270 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 399-116 chr17 52513406 52513635 + 3 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 122998 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 465-223 chr5 44088208 44088473 + 3 NA Intergenic Intergenic -300392 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 594-78 chr2 166846154 166846542 + 3 NA Intergenic Intergenic -42139 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 547-230 chr8 26722263 26722451 + 3 NA Intergenic Intergenic 143298 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 247-17 chr1 157119342 157119450 + 3 NA Intergenic L2b|LINE|L2 -8966 NR_001560 360155 Hs.491808 NR_001560 ENSG00000235700 CYCSP52 HC6|HCP2 CYCS pseudogene 52 pseudo 264-262 chr3 354201 354338 + 3 NA intron (NM_001253388, intron 8 of 24) intron (NM_001253388, intron 8 of 24) 31526 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 293-60 chr11 63311816 63311962 + 3 NA TTS (NR_134874) TTS (NR_134874) 21986 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 625-105 chr7 64360087 64360487 + 3 NA Intergenic AluSx|SINE|Alu 46326 NM_001170905 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 503-55 chr11 79836829 79837033 + 3 NA Intergenic L1MEd|LINE|L1 -395901 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 412-317 chr7 106415799 106415983 + 3 NA Intergenic L1MC|LINE|L1 -130908 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 478-254 chr6 78390948 78391191 + 3 NA Intergenic Intergenic 148240 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 554-126 chr2 171400215 171400489 + 3 NA intron (NM_024770, intron 1 of 9) intron (NM_024770, intron 1 of 9) 33638 NM_001321154 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 514-308 chrX 97739061 97739333 + 3 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -174662 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 419-23 chr1 214954818 214954991 + 3 NA Intergenic Intergenic -50638 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 529-83 chr17 16555691 16555911 + 3 NA intron (NM_020653, intron 5 of 5) intron (NM_020653, intron 5 of 5) 13403 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 251-284 chr5 11652508 11652614 + 3 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -63495 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 461-103 chr17 32825236 32825407 + 3 NA intron (NM_015194, intron 1 of 21) AluJb|SINE|Alu 51803 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 466-254 chr7 78874525 78874832 + 3 NA intron (NM_001301128, intron 2 of 20) L1MA6|LINE|L1 -134310 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 577-182 chr7 34077550 34077797 + 3 NA intron (NM_133468, intron 12 of 15) (ATAAC)n|Simple_repeat|Simple_repeat 172134 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 533-225 chr8 59446651 59446865 + 3 NA Intergenic L1MA2|LINE|L1 327548 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 1361-2 chr12 2385108 2385807 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 115681 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 506-215 chr4 161134825 161135160 + 3 NA Intergenic Intergenic -887741 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 399-44 chr10 99437112 99437307 + 3 NA Intergenic MIRc|SINE|MIR -6585 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 474-314 chrX 76339528 76339790 + 3 NA Intergenic Intergenic -88051 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 492-138 chr2 128884032 128884208 + 3 NA Intergenic Intergenic 19520 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 151-27 chr15 57039817 57039869 + 3 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 120398 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 756-58 chr8 84365493 84365851 + 3 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -49812 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 227-105 chr14 52029012 52029142 + 3 NA intron (NM_007361, intron 10 of 21) intron (NM_007361, intron 10 of 21) 39531 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 381-366 chr7 105821790 105821932 + 3 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 54724 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 549-156 chr4 177195984 177196299 + 3 NA Intergenic MamGypLTR1b|LTR|Gypsy -113733 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 232-51 chr11 10348360 10348468 + 3 NA intron (NR_103765, intron 2 of 3) ERVL-E-int|LTR|ERVL 40101 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 488-191 chr4 65904795 65904966 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -234385 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 377-104 chr13 56137801 56138024 + 3 NA Intergenic Intergenic 963458 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 590-175 chr8 139093503 139093796 + 3 NA Intergenic Intergenic -179608 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 872-40 chr5 170825427 170825900 + 3 NA Intergenic AluSc|SINE|Alu -36355 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 590-77 chr2 33026023 33026287 + 3 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) 79202 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 935-5 chr10 69541457 69541885 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 31751 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 178-154 chr8 130955265 130955350 + 3 NA intron (NM_001115, intron 2 of 17) MIRb|SINE|MIR 85602 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 741-36 chr20 62753919 62754392 + 3 NA intron (NM_002531, intron 1 of 3) intron (NM_002531, intron 1 of 3) 22701 NR_046225 100652730 Hs.254951 NR_046224 LINC00659 - long intergenic non-protein coding RNA 659 ncRNA 891-12 chr14 62835863 62836285 + 3 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 209384 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 586-56 chr15 79878877 79879131 + 3 NA intron (NR_037654, intron 2 of 2) L1M4a1|LINE|L1 17993 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 529-77 chr16 63478289 63478597 + 3 NA Intergenic Intergenic -1442005 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 282-386 chr5 111188105 111188294 + 3 NA Intergenic L1ME4b|LINE|L1 -35384 NM_001323375 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 179-21 chr13 55718162 55718226 + 3 NA Intergenic L1M2|LINE|L1 543740 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 512-49 chr11 41796997 41797228 + 3 NA intron (NR_120584, intron 2 of 5) LTR06|LTR|ERV1 82544 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 431-24 chr1 191325888 191326093 + 3 NA Intergenic Intergenic -97492 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 330-54 chr10 23011733 23011910 + 3 NA intron (NM_001282745, intron 16 of 18) intron (NM_001282745, intron 16 of 18) -83758 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 416-26 chr1 229133730 229133961 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 40956 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 1096-18 chr7 29380253 29380984 + 3 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -99094 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 825-48 chr7 45280788 45281151 + 3 NA Intergenic L1MD2|LINE|L1 123178 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 438-215 chr5 31772662 31772969 + 3 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 133684 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 851-40 chr7 50108814 50109260 + 3 NA intron (NM_001161834, intron 2 of 8) intron (NM_001161834, intron 2 of 8) 12951 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 409-306 chr9 26270821 26271028 + 3 NA Intergenic Intergenic 204249 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 449-163 chr3 65560415 65560721 + 3 NA intron (NM_001365904, intron 2 of 24) intron (NM_001365904, intron 2 of 24) -333248 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 364-400 chr6 161429039 161429188 + 3 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -41864 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 357-54 chr10 127792280 127792485 + 3 NA Intergenic Intergenic 55197 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 525-42 chr11 54804162 54804338 + 3 NA Intergenic ALR/Alpha|Satellite|centr 97418 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 717-40 chr2 27829741 27830087 + 3 NA intron (NM_022128, intron 6 of 7) L1MEi|LINE|L1 58195 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 437-306 chrY 56827078 56827325 + 3 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat -127054 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 459-181 chr3 28159528 28159733 + 3 NA Intergenic L1MA4|LINE|L1 -81989 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 505-318 chr8 133132431 133132743 + 3 NA intron (NM_003235, intron 46 of 47) intron (NM_003235, intron 46 of 47) -29985 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 349-473 chr7 46960188 46960362 + 3 NA Intergenic L1MEg|LINE|L1 -263153 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 295-363 chr4 162069303 162069494 + 3 NA intron (NM_020116, intron 2 of 15) L1MA5|LINE|L1 46665 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 1058-20 chr8 132710048 132710700 + 3 NA 3' UTR (NM_001145153, exon 9 of 9) 3' UTR (NM_001145153, exon 9 of 9) -34829 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 493-72 chr13 96887706 96888000 + 3 NA Intergenic L1MEc|LINE|L1 96319 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 416-74 chr11 85852036 85852224 + 3 NA Intergenic Intergenic -2971 NM_001286159 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 523-286 chr9 88619595 88619865 + 3 NA Intergenic L1MC|LINE|L1 84552 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 353-225 chr19 37449015 37449155 + 3 NA intron (NM_152484, intron 2 of 5) L1MCc|LINE|L1 18359 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 643-39 chr15 97192617 97192988 + 3 NA Intergenic L1MEc|LINE|L1 329009 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 422-116 chr17 69934366 69934559 + 3 NA Intergenic Intergenic -27245 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 360-322 chr4 31153556 31153741 + 3 NA Intergenic Intergenic -17496 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 533-47 chr13 95666790 95667026 + 3 NA Intergenic L1M1|LINE|L1 10017 NR_132117 100289274 Hs.594844 NR_132117 ENSG00000247400 DNAJC3-DT DNAJC3-AS1 DNAJC3 divergent transcript ncRNA 680-45 chr16 83076324 83076729 + 3 NA intron (NM_001220489, intron 3 of 12) L1ME2z|LINE|L1 -86228 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 559-7 chr1 159590741 159591092 + 3 NA Intergenic L2a|LINE|L2 3090 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 731-75 chr8 102177287 102177604 + 3 NA Intergenic Intergenic 52013 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 558-194 chr7 10399921 10400266 + 3 NA Intergenic Intergenic -302583 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 358-59 chr10 131767025 131767283 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 23045 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 396-115 chr15 63485373 63485618 + 3 NA Intergenic AluJr|SINE|Alu -19016 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 543-139 chr2 205213505 205213705 + 3 NA intron (NM_205863, intron 15 of 21) intron (NM_205863, intron 15 of 21) -468895 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 302-245 chr20 20241466 20241641 + 3 NA intron (NM_015585, intron 18 of 26) intron (NM_015585, intron 18 of 26) -126551 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 317-492 chr8 106071544 106071687 + 3 NA Intergenic Intergenic -11112 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 652-116 chr8 78774292 78774627 + 3 NA intron (NM_001199886, intron 2 of 4) intron (NM_001199886, intron 2 of 4) 31004 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 638-42 chr14 87381923 87382251 + 3 NA Intergenic Intergenic 273207 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 480-130 chr19 51853837 51854190 + 3 NA TTS (NM_001370457) TTS (NM_001370457) 33923 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 594-129 chr6 121906802 121907213 + 3 NA Intergenic L1MA6|LINE|L1 471361 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 487-111 chr17 53481916 53482215 + 3 NA Intergenic Intergenic -340862 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 511-112 chr2 33981333 33981669 + 3 NA intron (NR_126403, intron 4 of 5) L2b|LINE|L2 -85725 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 1418-2 chr6 144861906 144862698 + 3 NA Intergenic MER110-int|LTR|ERV1 456647 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 517-269 chr8 110661850 110662091 + 3 NA Intergenic Intergenic 365463 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 426-45 chr11 56393004 56393327 + 3 NA Intergenic Intergenic 17541 NM_001005204 219417 Hs.553618 NM_001005204 ENSG00000172199 OR8U1 - olfactory receptor family 8 subfamily U member 1 protein-coding 659-65 chr21 30632022 30632367 + 3 NA Intergenic Intergenic -3012 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 328-248 chr2 22479018 22479223 + 3 NA Intergenic L2c|LINE|L2 -57359 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 821-59 chrX 66228724 66229193 + 3 NA intron (NM_001367241, intron 15 of 18) L1PB1|LINE|L1 61208 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 644-105 chr8 105821910 105822211 + 3 NA intron (NR_125796, intron 2 of 7) L1MC4a|LINE|L1 238443 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 609-13 chr10 126076138 126076498 + 3 NA intron (NM_001288974, intron 11 of 18) L1PA16|LINE|L1 -103045 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 350-157 chr15 99950384 99950558 + 3 NA Intergenic L1MA8|LINE|L1 143448 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 910-4 chr1 245887862 245888599 + 3 NA intron (NM_022743, intron 8 of 11) intron (NM_022743, intron 8 of 11) 529182 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 596-87 chr2 31684590 31684939 + 3 NA Intergenic L1MA8|LINE|L1 -103826 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 439-14 chr1 119885004 119885208 + 3 NA Intergenic Intergenic 11409 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 457-15 chr1 166927412 166927588 + 3 NA intron (NM_199351, intron 6 of 9) intron (NM_199351, intron 6 of 9) 48040 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 444-202 chr5 113507470 113507664 + 3 NA Intergenic Intergenic -6127 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 436-16 chr1 161386208 161386449 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR -18445 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 563-16 chr10 43949804 43950150 + 3 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 37575 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 389-175 chr2 77696520 77696828 + 3 NA Intergenic LTR16A1|LTR|ERVL -174241 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 452-106 chr17 27201248 27201505 + 3 NA Intergenic Intergenic 92620 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 503-121 chr17 11914384 11914690 + 3 NA intron (NM_001372, intron 61 of 68) HAL1ME|LINE|L1 31635 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 738-11 chr11 60623703 60624059 + 3 NA intron (NR_026946, intron 2 of 6) L1PA13|LINE|L1 8130 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 726-68 chr6 52000593 52000982 + 3 NA intron (NM_138694, intron 35 of 66) intron (NM_138694, intron 35 of 66) 86826 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 577-13 chr1 112175271 112175689 + 3 NA Intergenic Intergenic 184944 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 388-337 chr8 27020667 27020861 + 3 NA Intergenic Intergenic 28199 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 723-20 chr13 50881154 50881692 + 3 NA TTS (NR_046552) TTS (NR_046552) -28255 NM_001142279 79621 Hs.306291 NM_024570 ENSG00000136104 RNASEH2B AGS2|DLEU8 ribonuclease H2 subunit B protein-coding 392-88 chr15 27665153 27665407 + 3 NA Intergenic Intergenic 434035 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 315-285 chr21 14235404 14235539 + 3 NA Intergenic L2a|LINE|L2 19314 NR_135308 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 555-30 chr11 28707285 28707676 + 3 NA Intergenic Intergenic -229932 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 188-110 chr2 189191187 189191268 + 3 NA Intergenic Intergenic -11466 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 377-411 chr8 126123128 126123290 + 3 NA Intergenic MIR|SINE|MIR -172012 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 846-5 chr11 43611910 43612467 + 3 NA Intergenic Intergenic 30794 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 350-131 chr14 49240157 49240290 + 3 NA Intergenic L1PA16|LINE|L1 346157 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 512-45 chr11 22002271 22002607 + 3 NA Intergenic Intergenic -190646 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 1281-4 chr2 147159323 147160097 + 3 NA Intergenic L1MA4|LINE|L1 572653 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 475-78 chr14 59526682 59526868 + 3 NA intron (NM_001164399, intron 15 of 19) intron (NM_001164399, intron 15 of 19) 42258 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 382-114 chr14 68264799 68265008 + 3 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 363884 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 742-39 chr2 75102685 75103063 + 3 NA intron (NM_015727, intron 2 of 3) HAL1b|LINE|L1 12062 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 294-474 chr8 115052675 115052826 + 3 NA Intergenic L1MB1|LINE|L1 615263 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 918-12 chr19 37405065 37405592 + 3 NA Intergenic L1MC1|LINE|L1 34229 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 271-336 chr5 22647940 22648078 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 205335 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 351-464 chr8 25662714 25662939 + 3 NA Intergenic Intergenic 203593 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 504-64 chr14 25388734 25388953 + 3 NA Intergenic Intergenic -338546 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 988-18 chr2 197062132 197062645 + 3 NA intron (NM_001367496, intron 16 of 27) intron (NM_001367496, intron 16 of 27) -135603 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 510-175 chr21 28477512 28477841 + 3 NA Intergenic MER66C|LTR|ERV1 -61642 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 750-49 chr3 94835814 94836216 + 3 NA Intergenic Intergenic -102248 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 415-267 chr7 153641036 153641205 + 3 NA Intergenic MLT2B4|LTR|ERVL -107013 NM_001364498 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 774-10 chr10 101323936 101324495 + 3 NA Intergenic L2b|LINE|L2 -29818 NM_001256856 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 385-19 chr1 215637561 215637843 + 3 NA intron (NM_206933, intron 69 of 71) intron (NM_206933, intron 69 of 71) 70398 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 449-57 chr12 62844570 62844755 + 3 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 90488 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 508-96 chr2 31481298 31481554 + 3 NA Intergenic L1PA14|LINE|L1 -66684 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 505-52 chr11 91699287 91699551 + 3 NA Intergenic Intergenic -525615 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 498-270 chr8 74187555 74187731 + 3 NA Intergenic Intergenic 133718 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 484-53 chr12 125945389 125945578 + 3 NA Intergenic L1MEc|LINE|L1 37891 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 1310 chr14 22328545 22329220 + 3 NA Intergenic L2c|LINE|L2 103871 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 653-40 chr14 66139999 66140388 + 3 NA Intergenic Intergenic -346178 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 439-59 chr11 109884154 109884462 + 3 NA Intergenic Intergenic -209084 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 467-93 chr15 83072451 83072732 + 3 NA Intergenic L1ME4a|LINE|L1 5256 NR_039740 100616404 NR_039740 ENSG00000263643 MIR4515 mir-4515 microRNA 4515 ncRNA 1128-9 chr2 30499511 30500245 + 3 NA intron (NM_001304445, intron 3 of 7) intron (NM_001304445, intron 3 of 7) 52632 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 430-226 chr4 163011441 163011710 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 82053 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 512-184 chr4 28512132 28512317 + 3 NA Intergenic Intergenic -307358 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 345-383 chr4 54635983 54636242 + 3 NA Intergenic L2c|LINE|L2 -21816 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 613-71 chr20 12620272 12620673 + 3 NA Intergenic Intergenic 316491 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 705-40 chr18 4127314 4127590 + 3 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) -137150 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 409-10 chr1 189126267 189126526 + 3 NA Intergenic L1MA4A|LINE|L1 1349614 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 643-19 chr11 114182233 114182516 + 3 NA intron (NM_001354752, intron 2 of 4) L2a|LINE|L2 -113439 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 897 chr1 157779095 157779496 + 3 NA Intergenic Intergenic -2163 NR_125358 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 652-39 chr14 79946834 79947087 + 3 NA Intergenic Intergenic -264459 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 394-192 chr2 185648932 185649149 + 3 NA Intergenic Intergenic 89679 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 832-12 chr2 76708546 76708995 + 3 NA Intergenic L1PA13|LINE|L1 -277195 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 550-139 chr21 20364145 20364338 + 3 NA Intergenic Intergenic -105556 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 428-252 chr6 51998498 51998704 + 3 NA intron (NM_138694, intron 35 of 66) intron (NM_138694, intron 35 of 66) 89012 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 518-308 chr8 140190503 140190694 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -90063 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 471-109 chr17 82741845 82742019 + 3 NA intron (NM_022158, intron 4 of 5) AluSp|SINE|Alu 6317 NM_022158 64122 Hs.151135 NM_022158 ENSG00000167363 FN3K - fructosamine 3 kinase protein-coding 890-23 chr3 26824233 26824638 + 3 NA Intergenic MER61-int|LTR|ERV1 129878 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 677-75 chr7 32451336 32451769 + 3 NA Intergenic LTR37A|LTR|ERV1 6942 NR_038454 100130673 Hs.609282 NR_038454 LOC100130673 - phosphoribosyl pyrophosphate synthetase 2 pseudogene pseudo 300-251 chr21 19108412 19108589 + 3 NA Intergenic LTR16A|LTR|ERVL -348688 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 212-170 chr2 134858183 134858292 + 3 NA TTS (NR_049856) TTS (NR_049856) 417 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 484-77 chr15 93758090 93758325 + 3 NA Intergenic (TACATG)n|Simple_repeat|Simple_repeat -98353 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 269-273 chr4 56260053 56260235 + 3 NA intron (NM_020722, intron 2 of 10) ERVL-B4-int|LTR|ERVL 89949 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 146-50 chr20 62140710 62140765 + 3 NA intron (NM_002792, intron 2 of 6) intron (NM_002792, intron 2 of 6) 2657 NM_002792 5688 Hs.233952 NM_002792 ENSG00000101182 PSMA7 C6|HEL-S-276|HSPC|RC6-1|XAPC7 proteasome subunit alpha 7 protein-coding 828-15 chr13 94399884 94400219 + 3 NA intron (NM_005708, intron 8 of 8) intron (NM_005708, intron 8 of 8) 79631 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 441-3 chr1 48573286 48573642 + 3 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -101256 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 725-64 chrX 91082908 91083319 + 3 NA Intergenic MER52A|LTR|ERV1 -351726 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 482-59 chr12 9213715 9213992 + 3 NA Intergenic L1MB7|LINE|L1 -5458 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 465-30 chr10 58912831 58913056 + 3 NA Intergenic Intergenic -86575 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 532-11 chr1 191103990 191104272 + 3 NA Intergenic Intergenic 124367 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 449-253 chr7 33700506 33700766 + 3 NA Intergenic Intergenic -204279 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 655-46 chr17 39833666 39833904 + 3 NA intron (NM_012481, intron 1 of 7) L1MC2|LINE|L1 30403 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 749-74 chr4 161192976 161193519 + 3 NA Intergenic Intergenic -829486 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 763-7 chr10 58688692 58689159 + 3 NA intron (NM_001080512, intron 2 of 20) L1PA7|LINE|L1 -26090 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 568-124 chr21 20184940 20185212 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 73609 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 832-19 chr20 42032606 42033201 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR -414526 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 464-53 chr13 105826439 105826660 + 3 NA Intergenic Intergenic 119719 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 467-200 chr4 33706861 33707055 + 3 NA Intergenic L1MB1|LINE|L1 332935 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 531-70 chr15 67909054 67909251 + 3 NA Intergenic MER41B|LTR|ERV1 -69107 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 403-305 chr8 79060371 79060606 + 3 NA Intergenic Intergenic 222959 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 615-137 chr8 72400010 72400443 + 3 NA Intergenic Intergenic -136999 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 341-250 chr2 69488347 69488629 + 3 NA intron (NM_014911, intron 17 of 21) MIRb|SINE|MIR 31683 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 735-57 chr3 73981913 73982329 + 3 NA Intergenic Intergenic 172877 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 411-271 chr7 45996656 45996891 + 3 NA Intergenic L1M4|LINE|L1 -75501 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 186-47 chr14 48356551 48356656 + 3 NA Intergenic Intergenic -561589 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 692-101 chr8 106981743 106982123 + 3 NA Intergenic Intergenic -211689 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 564-132 chr3 118012287 118012574 + 3 NA Intergenic Intergenic -321505 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 949-2 chr1 247039483 247040077 + 3 NA intron (NM_033213, intron 1 of 3) intron (NM_033213, intron 1 of 3) -31723 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 506-260 chr6 159190080 159190366 + 3 NA intron (NM_032532, intron 1 of 22) intron (NM_032532, intron 1 of 22) -20216 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 447-297 chr9 118468980 118469276 + 3 NA Intergenic MIRb|SINE|MIR -210543 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 540-70 chr14 77431823 77432140 + 3 NA intron (NM_001193315, intron 16 of 19) L1MA9|LINE|L1 -8925 NM_001113475 122945 Hs.97556 NM_138791 ENSG00000165555 NOXRED1 C14orf148 NADP dependent oxidoreductase domain containing 1 protein-coding 490-160 chr2 182166042 182166357 + 3 NA intron (NM_005019, intron 13 of 14) MLT2B3|LTR|ERVL 75864 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 589-61 chr2 34041836 34042137 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -25240 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 795-60 chr8 139566802 139567385 + 3 NA Intergenic L3|LINE|CR1 136030 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 555-61 chr15 94254686 94254881 + 3 NA Intergenic Intergenic -43418 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 660-55 chr20 60316588 60316811 + 3 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) 8225 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 423-268 chr7 64453287 64453513 + 3 NA Intergenic L1MA6|LINE|L1 19707 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 606-44 chr12 129998427 129998750 + 3 NA Intergenic LTR37A|LTR|ERV1 43754 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 392-352 chr9 115565715 115565925 + 3 NA Intergenic L1PB3|LINE|L1 178419 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 628-38 chr12 72895758 72896067 + 3 NA Intergenic MER115|DNA|hAT-Tip100 -263278 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 1019-11 chr2 100317408 100317907 + 3 NA intron (NM_198461, intron 1 of 11) L1ME3|LINE|L1 5076 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 220-271 chr5 5439699 5439790 + 3 NA intron (NM_015325, intron 3 of 18) intron (NM_015325, intron 3 of 18) 17067 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 478-94 chr15 46174333 46174644 + 3 NA Intergenic Intergenic 469293 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 524-22 chr1 228233507 228233807 + 3 NA intron (NM_052843, intron 9 of 80) L1MEf|LINE|L1 -19993 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 538-87 chr17 58905007 58905290 + 3 NA intron (NM_014906, intron 1 of 6) L1MCa|LINE|L1 149279 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 332-532 chr8 89137654 89137840 + 3 NA Intergenic L1MD|LINE|L1 619964 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 332-431 chr5 127257618 127257751 + 3 NA Intergenic MER4D0|LTR|ERV1 -33080 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 575-86 chr2 98997673 98997909 + 3 NA non-coding (NR_146001, exon 19 of 19) non-coding (NR_146001, exon 19 of 19) -61566 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 534-233 chr7 37086822 37087156 + 3 NA intron (NM_001206480, intron 15 of 21) L1MC|LINE|L1 89193 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 629-22 chr10 76259486 76259893 + 3 NA intron (NM_001305581, intron 5 of 6) L1MA5A|LINE|L1 476928 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 395-343 chr8 122629802 122629978 + 3 NA Intergenic L2c|LINE|L2 -61246 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 584-32 chr11 115816397 115816606 + 3 NA Intergenic L3|LINE|CR1 -56301 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 470-33 chr11 21946983 21947164 + 3 NA Intergenic MIR3|SINE|MIR -246012 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 656-56 chr2 67762506 67762836 + 3 NA Intergenic Intergenic 62891 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 443-124 chr17 73901539 73901776 + 3 NA Intergenic Intergenic -73120 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 628-72 chr2 101814479 101814805 + 3 NA intron (NM_145686, intron 3 of 30) intron (NM_145686, intron 3 of 30) 116935 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 196-257 chr8 119588082 119588210 + 3 NA intron (NM_001330600, intron 13 of 25) intron (NM_001330600, intron 13 of 25) 4862 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 503-209 chr4 34468733 34468979 + 3 NA Intergenic Intergenic -199109 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 332-185 chr16 77557584 77557733 + 3 NA Intergenic MIRc|SINE|MIR -122624 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 246-262 chr3 100670384 100670508 + 3 NA intron (NM_001308362, intron 9 of 9) L1MA3|LINE|L1 34908 NM_001308362 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 812-49 chr7 137474434 137474975 + 3 NA intron (NM_001321710, intron 24 of 32) intron (NM_001321710, intron 24 of 32) -130971 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 313-137 chr14 39945883 39946109 + 3 NA Intergenic L1MA3|LINE|L1 -513496 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 374-147 chr17 65738540 65738770 + 3 NA intron (NR_126542, intron 2 of 5) HAL1b|LINE|L1 87796 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 583-122 chr4 58672611 58673112 + 3 NA Intergenic MER41-int|LTR|ERV1 -136533 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 734-55 chr4 100890858 100891342 + 3 NA Intergenic L1M5|LINE|L1 -215987 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 405-205 chr3 103525056 103525276 + 3 NA Intergenic Intergenic -1050 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 450-57 chr11 116396696 116396974 + 3 NA Intergenic Intergenic -242587 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 491-143 chr20 11172239 11172431 + 3 NA Intergenic (A)n|Simple_repeat|Simple_repeat 101048 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 472-4 chr1 41461639 41461896 + 3 NA Intergenic AluJo|SINE|Alu 22916 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 449-16 chr1 196477477 196477649 + 3 NA intron (NM_001287820, intron 5 of 26) AluJb|SINE|Alu 104918 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 879-24 chr4 107705843 107706451 + 3 NA intron (NM_005443, intron 1 of 11) L1MA8|LINE|L1 14087 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 452-28 chr10 43984452 43984647 + 3 NA Intergenic LTR62|LTR|ERVL 72147 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 323-41 chr10 10227254 10227456 + 3 NA Intergenic L1MEd|LINE|L1 168633 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 314-55 chr10 11347259 11347438 + 3 NA Intergenic MER66-int|LTR|ERV1 -2674 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 467-43 chr11 25508812 25508969 + 3 NA Intergenic Intergenic -680233 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 446-263 chr6 40182763 40183032 + 3 NA Intergenic Intergenic 173109 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 423-241 chr6 64225637 64225809 + 3 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 418887 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 545-64 chr13 76414719 76415029 + 3 NA Intergenic Intergenic 471531 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 436-245 chr5 92791938 92792215 + 3 NA Intergenic L1PA13|LINE|L1 779267 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 1697-2 chr8 126710806 126711714 + 3 NA Intergenic Intergenic -152782 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 301-21 chr1 195253214 195253399 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 835409 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 575-22 chr10 92237638 92237854 + 3 NA intron (NM_001178137, intron 2 of 9) intron (NM_001178137, intron 2 of 9) 5533 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 483-171 chr3 102934967 102935293 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 500115 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 486-148 chr2 117042227 117042535 + 3 NA Intergenic (TATACTA)n|Simple_repeat|Simple_repeat -772310 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 564-41 chr12 46529516 46529849 + 3 NA intron (NR_125380, intron 3 of 3) L1MC1|LINE|L1 145575 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 499-89 chr17 57738690 57738947 + 3 NA Intergenic L1M4|LINE|L1 6481 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 575-83 chr2 76690039 76690404 + 3 NA Intergenic HAL1|LINE|L1 -295744 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 565-78 chr2 60053331 60053596 + 3 NA Intergenic Intergenic 329573 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 476-136 chr2 52683082 52683301 + 3 NA Intergenic L1MA4A|LINE|L1 19424 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 623-64 chr2 108408033 108408288 + 3 NA Intergenic AluSz|SINE|Alu 30206 NM_006588 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 886-3 chr10 34054177 34054567 + 3 NA Intergenic AluJo|SINE|Alu -281692 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 400-249 chr4 61111887 61112151 + 3 NA Intergenic Intergenic -31637 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 717-60 chr4 19338088 19338522 + 3 NA Intergenic Intergenic -913600 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 707-102 chr8 82224811 82225319 + 3 NA Intergenic Intergenic -382779 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 808-36 chr22 23228769 23229190 + 3 NA intron (NM_004327, intron 1 of 22) L1MEf|LINE|L1 -33788 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 595-71 chr18 12791504 12791886 + 3 NA TTS (NM_001308287) TTS (NM_001308287) -42273 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 356-324 chr3 70602394 70602536 + 3 NA Intergenic HAL1|LINE|L1 -289827 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 556-238 chr8 140142628 140142942 + 3 NA intron (NM_001160372, intron 17 of 22) MIRc|SINE|MIR -42250 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 318-126 chr12 3431058 3431293 + 3 NA intron (NM_001256536, intron 1 of 9) L2a|LINE|L2 49826 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 848-9 chr12 59723313 59723830 + 3 NA intron (NM_001270623, intron 3 of 5) L2b|LINE|L2 34201 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 488-235 chr6 70908994 70909223 + 3 NA intron (NM_080742, intron 1 of 3) intron (NM_080742, intron 1 of 3) 47952 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 631-116 chr7 65388273 65388691 + 3 NA intron (NM_001287532, intron 2 of 2) AluSx1|SINE|Alu 14627 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 404-278 chr6 140100851 140101075 + 3 NA Intergenic MIR|SINE|MIR -104289 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 578-61 chr14 70836664 70836985 + 3 NA Intergenic L1ME1|LINE|L1 -27311 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 460-23 chr1 238704525 238704688 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -218589 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 736-31 chr17 34551619 34552134 + 3 NA Intergenic L2a|LINE|L2 27493 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 359-465 chr8 52534827 52535046 + 3 NA intron (NM_207413, intron 4 of 4) intron (NM_207413, intron 4 of 4) 30494 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 659-111 chr7 137553052 137553344 + 3 NA intron (NM_001321710, intron 19 of 32) intron (NM_001321710, intron 19 of 32) -209465 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 626-61 chr2 38206892 38207134 + 3 NA Intergenic L1ME1|LINE|L1 75908 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 469-13 chr1 112237806 112238174 + 3 NA Intergenic L2a|LINE|L2 -158224 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 542-219 chr8 78438257 78438559 + 3 NA Intergenic LTR33A_|LTR|ERVL -77932 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 287-341 chr6 3600874 3601060 + 3 NA Intergenic L1M2|LINE|L1 -144408 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 560-92 chr2 239208441 239208725 + 3 NA intron (NM_006037, intron 3 of 26) L1ME3Cz|LINE|L1 -13126 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 366-459 chr8 138427468 138427629 + 3 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 69713 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 991-14 chr21 29514550 29514904 + 3 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 18680 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 651-71 chr2 156958196 156958523 + 3 NA Intergenic Intergenic -299346 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 462-280 chr8 79994855 79995061 + 3 NA intron (NM_014018, intron 2 of 2) L2c|LINE|L2 35301 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 394-20 chr1 157813091 157813267 + 3 NA intron (NM_001159397, intron 1 of 9) L1MA6|LINE|L1 6941 NM_052938 115350 Hs.656112 NM_052938 ENSG00000163534 FCRL1 CD307a|FCRH1|IFGP1|IRTA5 Fc receptor like 1 protein-coding 1009-16 chr5 55053429 55053893 + 3 NA Intergenic Intergenic 29405 NM_002104 3003 Hs.277937 NM_002104 ENSG00000113088 GZMK TRYP2 granzyme K protein-coding 502-216 chr5 30008468 30008700 + 3 NA Intergenic L1MEi|LINE|L1 128024 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 907-17 chr3 55368778 55369238 + 3 NA Intergenic L2a|LINE|L2 112390 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 506-8 chr1 87660262 87660471 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -288711 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 449-179 chr3 194618489 194618713 + 3 NA intron (NM_001166305, intron 5 of 10) (TA)n|Simple_repeat|Simple_repeat 14818 NM_001166305 93109 Hs.478729 NM_138399 ENSG00000145014 TMEM44 - transmembrane protein 44 protein-coding 316-462 chr5 140089947 140090117 + 3 NA Intergenic FLAM_C|SINE|Alu 17980 NR_102740 100505636 Hs.438871 NR_102739 ENSG00000245146 MALINC1 LINC01024|MA-linc1 mitosis associated long intergenic non-coding RNA 1 ncRNA 820-63 chr8 99376587 99377075 + 3 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 159899 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 479-258 chr8 122966009 122966237 + 3 NA intron (NM_001362797, intron 4 of 4) L1PB1|LINE|L1 59649 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 338-577 chr9 626664 626870 + 3 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) -60000 NM_001354336 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 414-341 chr8 133614336 133614620 + 3 NA Intergenic Intergenic -42591 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 408-257 chr5 6889033 6889241 + 3 NA Intergenic LOR1b|LTR|ERV1 -61216 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 526-79 chr14 82108216 82108490 + 3 NA Intergenic Intergenic -365215 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 429-70 chr12 48308717 48308931 + 3 NA Intergenic Intergenic -20156 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 549-196 chr7 86088978 86089361 + 3 NA Intergenic HERVL-int|LTR|ERVL -554740 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 497-120 chr2 53405191 53405504 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -362436 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 474-273 chr7 96968666 96968904 + 3 NA non-coding (NR_015448, exon 3 of 3) non-coding (NR_015448, exon 3 of 3) -36768 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 500-194 chr3 166662609 166662837 + 3 NA Intergenic L1MA2|LINE|L1 -235960 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 478-46 chr11 84112444 84112726 + 3 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 160695 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 463-311 chr9 90684651 90684918 + 3 NA Intergenic Intergenic -41960 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 522-91 chr15 57804430 57804726 + 3 NA Intergenic L1M5|LINE|L1 97864 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 320-574 chr8 127352529 127352728 + 3 NA intron (NR_117099, intron 3 of 3) MIRb|SINE|MIR -47771 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 425-113 chr18 7632278 7632471 + 3 NA intron (NM_002845, intron 1 of 30) MIRb|SINE|MIR 65058 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 812-43 chr6 47184625 47185064 + 3 NA Intergenic Intergenic 125061 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 530-137 chr2 118212134 118212383 + 3 NA Intergenic L1MD1|LINE|L1 -25872 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 477-43 chr10 75405983 75406178 + 3 NA intron (NR_110302, intron 1 of 1) CpG-3054 1915 NR_110302 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 304-161 chr15 61482702 61482822 + 3 NA Intergenic L1M5|LINE|L1 -247156 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 566-118 chr22 24944403 24944670 + 3 NA intron (NM_001001663, intron 1 of 3) L2a|LINE|L2 2159 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 516-12 chr1 188862944 188863164 + 3 NA Intergenic L1M1|LINE|L1 1419426 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 433-159 chr21 20196200 20196442 + 3 NA Intergenic Intergenic 62364 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 781-36 chr2 234457394 234457741 + 3 NA Intergenic L1MEi|LINE|L1 -2972 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 662-71 chr5 5750985 5751362 + 3 NA Intergenic Intergenic 328496 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 551-162 chr5 103679693 103680007 + 3 NA Intergenic Intergenic -117061 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 595-134 chr5 115191528 115191784 + 3 NA Intergenic Intergenic -11110 NM_001017398 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 428-187 chr3 108144978 108145169 + 3 NA Intergenic Intergenic 19252 NR_110028 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 392-139 chr2 19792341 19792524 + 3 NA Intergenic MER8|DNA|TcMar-Tigger -76422 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 242-41 chr10 73316799 73316924 + 3 NA intron (NM_001367801, intron 10 of 27) L1ME1|LINE|L1 41893 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 458-171 chr3 86141443 86141625 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -313484 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 934-34 chr8 133941182 133941784 + 3 NA Intergenic L1MCa|LINE|L1 54987 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 625-41 chr18 5209199 5209636 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -11665 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 863-47 chr7 97693217 97693727 + 3 NA Intergenic Intergenic -38614 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 540-64 chr14 36396406 36396630 + 3 NA Intergenic Intergenic -75842 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 487-171 chr22 27348482 27348774 + 3 NA Intergenic MER113|DNA|hAT-Charlie 37977 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 614-9 chr10 30204738 30205038 + 3 NA Intergenic L1MEf|LINE|L1 -6964 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 727-42 chr19 27608334 27608732 + 3 NA Intergenic ALR/Alpha|Satellite|centr -184898 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 683-55 chr3 100784182 100784557 + 3 NA intron (NM_001349331, intron 32 of 42) L1PB3|LINE|L1 74827 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 300-266 chr3 20421248 20421407 + 3 NA Intergenic L1ME4a|LINE|L1 78859 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 442-20 chr1 241203908 241204079 + 3 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 71721 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 446-220 chr4 85345248 85345497 + 3 NA Intergenic Intergenic -129778 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 577-92 chr2 60113862 60114132 + 3 NA Intergenic L1MEd|LINE|L1 269039 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 397-210 chr3 104287911 104288151 + 3 NA Intergenic Intergenic -763915 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 1252-2 chr1 105982484 105983383 + 3 NA intron (NR_146609, intron 5 of 5) L1P4|LINE|L1 45320 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 633-68 chr2 170137237 170137696 + 3 NA Intergenic Intergenic -40681 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 499-32 chr10 99284152 99284538 + 3 NA Intergenic L1M4|LINE|L1 -44754 NM_001345888 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 433-95 chr15 71686141 71686402 + 3 NA intron (NM_001286429, intron 2 of 11) intron (NM_001286429, intron 2 of 11) 5268 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 593-24 chr11 50370733 50371065 + 3 NA Intergenic ALR/Alpha|Satellite|centr -38248 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 374-373 chr8 18488405 18488594 + 3 NA Intergenic L1P4|LINE|L1 97217 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 446-11 chr1 71896342 71896576 + 3 NA intron (NM_173808, intron 2 of 6) L1MB7|LINE|L1 -59447 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 290-408 chr7 20767116 20767301 + 3 NA Intergenic Intergenic 19678 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 498-62 chr11 115820895 115821136 + 3 NA Intergenic AluY|SINE|Alu -60815 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 399-222 chr3 192315904 192316108 + 3 NA intron (NM_004113, intron 4 of 5) MLT1K|LTR|ERVL-MaLR 77376 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 353-69 chr10 92606074 92606235 + 3 NA intron (NM_004523, intron 1 of 21) intron (NM_004523, intron 1 of 21) 13024 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 684-73 chr3 75887514 75887863 + 3 NA Intergenic Intergenic -102139 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 541-171 chr4 89384451 89384697 + 3 NA Intergenic MIR|SINE|MIR -76774 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 530-75 chr14 57582410 57582763 + 3 NA intron (NM_001352016, intron 3 of 3) intron (NM_001352016, intron 3 of 3) -88729 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 813-20 chr2 106519142 106519671 + 3 NA intron (NM_001368307, intron 5 of 5) intron (NM_001368307, intron 5 of 5) 32042 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 468-252 chr5 68202904 68203213 + 3 NA Intergenic Intergenic -12698 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 465-269 chr7 20911263 20911459 + 3 NA intron (NR_126381, intron 2 of 5) MLT2B4|LTR|ERVL 75930 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 525-289 chrX 78614183 78614396 + 3 NA Intergenic L1MA3|LINE|L1 45039 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 655-49 chr18 59062914 59063316 + 3 NA Intergenic Intergenic 27436 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 716-85 chr8 83283239 83283606 + 3 NA Intergenic L1MB3|LINE|L1 -120336 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 410-106 chr16 75168752 75168947 + 3 NA intron (NM_001318475, intron 3 of 3) intron (NM_001318475, intron 3 of 3) 19798 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 428-69 chr14 66790825 66791049 + 3 NA intron (NM_001024218, intron 3 of 21) MER57-int|LTR|ERV1 283530 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 529-15 chr10 62123109 62123299 + 3 NA Intergenic L1MA5|LINE|L1 73847 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 669-31 chr15 54962167 54962457 + 3 NA Intergenic Intergenic -94435 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 558-9 chr1 115083910 115084113 + 3 NA intron (NM_005725, intron 1 of 7) intron (NM_005725, intron 1 of 7) 5489 NM_001308315 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 825-2 chr10 18086570 18086991 + 3 NA Intergenic Intergenic -53644 NM_201572 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 482-92 chr16 71559910 71560181 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -4971 NR_103852 100132529 Hs.710296 NR_103851 ENSG00000260886 TAT-AS1 - TAT antisense RNA 1 ncRNA 708-8 chr10 43619690 43620054 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR -8945 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 539-41 chr11 115486444 115486650 + 3 NA intron (NM_001098517, intron 1 of 8) AluJo|SINE|Alu 17868 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 553-145 chr22 16193700 16193968 + 3 NA Intergenic Intergenic -372950 NR_133911 106480334 Hs.643607 NR_133911 ENSG00000232775 BMS1P22 - BMS1 pseudogene 22 pseudo 329-106 chr11 122030882 122031056 + 3 NA intron (NR_137178, intron 4 of 4) L2c|LINE|L2 68875 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 497-137 chr2 155523213 155523495 + 3 NA Intergenic Intergenic 731577 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 699-67 chr21 34709249 34709776 + 3 NA exon (NM_053277, exon 5 of 6) exon (NM_053277, exon 5 of 6) 27670 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 624-117 chr8 84838015 84838374 + 3 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 132267 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 654-102 chr5 133675312 133675680 + 3 NA Intergenic Intergenic -62955 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 643-60 chr2 154507686 154508088 + 3 NA Intergenic Intergenic -50449 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 505-136 chr2 29555695 29555916 + 3 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -80428 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 747-77 chrUn_KI270538v1 23864 24212 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 586-5 chr1 42089715 42090078 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR -53962 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 455-149 chr20 42469676 42469983 + 3 NA intron (NM_133170, intron 8 of 31) intron (NM_133170, intron 8 of 31) -215654 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 1357-2 chr14 97039774 97040528 + 3 NA Intergenic L1MEc|LINE|L1 96572 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 727-74 chr6 143889614 143890081 + 3 NA intron (NM_001013623, intron 4 of 7) L1ME2|LINE|L1 25373 NM_001013623 153918 Hs.121188 NM_001013623 ENSG00000118491 ZC2HC1B C6orf94|FAM164B|dJ468K18.5 zinc finger C2HC-type containing 1B protein-coding 514-242 chr5 156615057 156615356 + 3 NA intron (NM_001128209, intron 5 of 7) intron (NM_001128209, intron 5 of 7) -235089 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 298-236 chr2 150949249 150949461 + 3 NA Intergenic L1ME3B|LINE|L1 312508 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 295-408 chr6 62193131 62193239 + 3 NA intron (NR_146874, intron 1 of 13) (AT)n|Simple_repeat|Simple_repeat 93040 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 494-189 chr3 147446367 147446588 + 3 NA intron (NR_121655, intron 1 of 2) L1ME1|LINE|L1 25150 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 576-51 chr14 76802227 76802519 + 3 NA intron (NM_001370747, intron 9 of 11) L1M7|LINE|L1 10509 NM_001370748 23357 Hs.497448 NM_015305 ENSG00000013523 ANGEL1 Ccr4e|KIAA0759 angel homolog 1 protein-coding 513-294 chr9 5204636 5204946 + 3 NA Intergenic Intergenic -19152 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 508-10 chr1 112179533 112179752 + 3 NA Intergenic Intergenic 189106 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 573-135 chr4 186341114 186341465 + 3 NA intron (NR_033900, intron 1 of 3) intron (NR_033900, intron 1 of 3) 75100 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 413-117 chr18 1558829 1559013 + 3 NA Intergenic L1PA17|LINE|L1 -199292 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 618-100 chr5 111897873 111898232 + 3 NA intron (NM_001142474, intron 2 of 3) L2|LINE|L2 -14456 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 946-17 chr4 46091849 46092292 + 3 NA intron (NM_173536, intron 2 of 8) L1MEg|LINE|L1 31984 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 543-245 chr8 83842012 83842216 + 3 NA Intergenic Intergenic -340673 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 427-143 chr21 25093061 25093341 + 3 NA Intergenic Intergenic 252651 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 350-558 chr9 123571634 123571779 + 3 NA intron (NM_001352968, intron 11 of 18) L1ME1|LINE|L1 -86084 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 426-224 chr5 14275568 14275873 + 3 NA intron (NM_007118, intron 2 of 56) L1MC5a|LINE|L1 132378 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 512-38 chr10 59772990 59773244 + 3 NA Intergenic Intergenic -19662 NM_001304732 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 645-37 chr15 54744764 54745262 + 3 NA Intergenic L1MA6|LINE|L1 -311734 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 475-36 chr11 24288671 24288939 + 3 NA Intergenic Intergenic -208248 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 370-413 chr7 33029230 33029461 + 3 NA intron (NM_001002010, intron 1 of 8) intron (NM_001002010, intron 1 of 8) 11561 NM_016489 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 490-25 chr1 176254615 176254853 + 3 NA Intergenic L1MA5|LINE|L1 -47448 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 683-26 chr17 34880217 34880670 + 3 NA Intergenic L1MEb|LINE|L1 81017 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 248-348 chr6 61687979 61688127 + 3 NA intron (NR_146874, intron 8 of 13) intron (NR_146874, intron 8 of 13) 113923 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 785-40 chr4 72248589 72249026 + 3 NA Intergenic Intergenic 209675 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 662-51 chr2 161713961 161714388 + 3 NA intron (NM_001354443, intron 2 of 25) intron (NM_001354443, intron 2 of 25) 89758 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 450-311 chr8 121924529 121924855 + 3 NA Intergenic Intergenic -283252 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 383-375 chr8 70707386 70707544 + 3 NA intron (NM_001287259, intron 5 of 5) L1ME4b|LINE|L1 38126 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 530-242 chr7 114111717 114111977 + 3 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 25520 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 548-183 chr5 87504214 87504539 + 3 NA Intergenic Intergenic -91343 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 702-13 chr11 28718432 28718691 + 3 NA Intergenic Intergenic -241013 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 557-129 chr3 31473989 31474362 + 3 NA Intergenic Intergenic -58750 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 750-10 chr10 70180844 70181249 + 3 NA Intergenic L1MC3|LINE|L1 -10532 NM_020150 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 631-123 chr7 158209548 158209986 + 3 NA intron (NM_001308267, intron 2 of 21) L1MA3|LINE|L1 323046 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 874-36 chr9 96740707 96741189 + 3 NA Intergenic AluJo|SINE|Alu 15127 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 482-245 chr7 37058707 37058888 + 3 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 61001 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 579-49 chr16 60684124 60684525 + 3 NA Intergenic Intergenic -324531 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 390-297 chr5 86482587 86482736 + 3 NA Intergenic Intergenic -135280 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 619-59 chr16 86461276 86461653 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 47396 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 303-317 chr4 73744312 73744465 + 3 NA TTS (NM_000584) TTS (NM_000584) 3819 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 464-147 chr20 42285219 42285460 + 3 NA intron (NM_133170, intron 12 of 31) L3|LINE|CR1 -400144 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 741-47 chr4 45626109 45626513 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 497743 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 367-174 chr18 4864580 4864821 + 3 NA Intergenic L1MCc|LINE|L1 -216482 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 486-45 chr11 36986239 36986563 + 3 NA Intergenic L1MCa|LINE|L1 -388122 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 707-72 chr4 46182357 46182859 + 3 NA Intergenic L1PA11|LINE|L1 -58554 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 544-237 chr9 29105823 29106033 + 3 NA intron (NM_001354574, intron 1 of 5) MLT1E1A|LTR|ERVL-MaLR 106371 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 893-27 chr21 31073590 31074205 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -35421 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 565-24 chr11 50447011 50447305 + 3 NA Intergenic MER11C|LTR|ERVK 38011 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 535 chr1 1529670 1529904 + 3 NA intron (NM_001170536, intron 15 of 15) intron (NM_001170536, intron 15 of 15) 10837 NM_001114748 339453 Hs.668654 NM_001114748 ENSG00000205090 TMEM240 C1orf70|SCA21 transmembrane protein 240 protein-coding 629-69 chr2 189534654 189535116 + 3 NA Intergenic Intergenic 45926 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 484-59 chr14 45625824 45626065 + 3 NA Intergenic Intergenic 89658 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 604-31 chr11 98237849 98238062 + 3 NA Intergenic L1PA17|LINE|L1 -782994 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 412-184 chr20 42294683 42294963 + 3 NA intron (NM_133170, intron 12 of 31) L1MC4|LINE|L1 -390660 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 425-163 chr20 24727422 24727684 + 3 NA Intergenic L1ME3|LINE|L1 -221716 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 712-82 chr5 174846213 174846572 + 3 NA Intergenic (AGAAAG)n|Simple_repeat|Simple_repeat 94658 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 515-222 chr5 159118494 159118822 + 3 NA Intergenic L1ME3B|LINE|L1 18175 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 480-109 chr17 44987484 44987799 + 3 NA Intergenic Intergenic -19338 NM_006688 10882 Hs.134012 NM_006688 ENSG00000131094 C1QL1 C1QRF|C1QTNF14|CRF|CTRP14 complement C1q like 1 protein-coding 534-215 chr6 54002042 54002275 + 3 NA intron (NR_046832, intron 2 of 3) intron (NR_046832, intron 2 of 3) 3268 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 465-257 chr6 122505570 122505727 + 3 NA intron (NM_001270393, intron 3 of 7) HERVKC4-int|LTR|ERVK 33731 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 700-23 chr12 105636249 105636706 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -67726 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 394-264 chr5 44829061 44829263 + 3 NA Intergenic Intergenic 20215 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 719-81 chr8 113232220 113232720 + 3 NA intron (NM_001363185, intron 3 of 66) MER5A1|DNA|hAT-Charlie 144682 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 547-84 chr18 4839056 4839254 + 3 NA Intergenic Intergenic -242027 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 594-59 chr19 12515633 12515894 + 3 NA Intergenic Intergenic -30947 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 561-43 chr12 17662125 17662383 + 3 NA Intergenic Intergenic -11045 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 723-14 chr10 61492832 61493283 + 3 NA intron (NR_120643, intron 5 of 5) Charlie1a|DNA|hAT-Charlie 13016 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 486-252 chr5 168285699 168285895 + 3 NA Intergenic L2a|LINE|L2 -5848 NM_015238 23286 Hs.484047 NM_015238 ENSG00000113645 WWC1 HBEBP3|HBEBP36|KIBRA|MEMRYQTL|PPP1R168 WW and C2 domain containing 1 protein-coding 685-94 chr8 83788973 83789308 + 3 NA Intergenic Intergenic 385382 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 388-292 chr5 124832419 124832599 + 3 NA Intergenic MER34A|LTR|ERV1 -87397 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 450-133 chr2 19503549 19503780 + 3 NA Intergenic Intergenic -145041 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 939-4 chr1 118175963 118176608 + 3 NA intron (NM_206996, intron 1 of 48) L1MA4|LINE|L1 8943 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 258-224 chr20 9801408 9801584 + 3 NA intron (NM_177990, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat 37580 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 445-202 chr4 97341451 97341625 + 3 NA Intergenic L1PA10|LINE|L1 -25388 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 869-5 chr1 239224026 239224355 + 3 NA Intergenic L1M2|LINE|L1 -162378 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 503-50 chr11 40234175 40234353 + 3 NA intron (NM_020929, intron 3 of 4) MIRb|SINE|MIR 58866 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 235-394 chr9 101410548 101410669 + 3 NA TTS (NM_001278240) TTS (NM_001278240) 11754 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 1132-5 chr17 73033542 73034165 + 3 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 58835 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 448-203 chr5 24583549 24583744 + 3 NA intron (NM_001362460, intron 2 of 9) AluSg7|SINE|Alu 61332 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 921-15 chr3 109696869 109697406 + 3 NA Intergenic L1M5|LINE|L1 94309 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 502-231 chr5 178706605 178706871 + 3 NA Intergenic L1MCb|LINE|L1 23921 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 650-35 chr17 20024638 20024928 + 3 NA intron (NM_001243439, intron 1 of 14) LTR33A_|LTR|ERVL 15424 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 1110-13 chr3 182110250 182110920 + 3 NA Intergenic Intergenic 158221 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 976-15 chr3 78293013 78293698 + 3 NA Intergenic Intergenic -244392 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 467-196 chr4 6504869 6505097 + 3 NA intron (NM_001206994, intron 2 of 9) L1ME2|LINE|L1 -32369 NM_001363388 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 944-16 chr21 20180689 20181264 + 3 NA Intergenic Intergenic 77709 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 648-110 chr5 45179375 45179596 + 3 NA Intergenic Intergenic 370538 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 457-247 chr7 159263100 159263319 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity -118252 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 293-343 chr5 96461016 96461201 + 3 NA intron (NR_130776, intron 4 of 4) L1MB7|LINE|L1 -27860 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 575-43 chr12 47441193 47441524 + 3 NA Intergenic L1MD|LINE|L1 26350 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 496-131 chr2 52281935 52282162 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -88600 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 436-142 chr2 145507185 145507420 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 839335 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 256-142 chr15 87639760 87639869 + 3 NA Intergenic L1ME4a|LINE|L1 62885 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 551-66 chr16 47815326 47815589 + 3 NA Intergenic L1PA17|LINE|L1 -43124 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 715-34 chr2 55731334 55731864 + 3 NA Intergenic MIR|SINE|MIR -37755 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 317-23 chr1 163022071 163022255 + 3 NA Intergenic L1MA8|LINE|L1 -46443 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 578-100 chr2 231776528 231776784 + 3 NA intron (NM_002601, intron 1 of 4) L2c|LINE|L2 4626 NR_110994 5147 Hs.516808 NM_002601 ENSG00000156973 PDE6D JBTS22|PDED phosphodiesterase 6D protein-coding 1127-2 chr2 14110872 14111427 + 3 NA Intergenic L1M1|LINE|L1 289809 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 447-57 chr12 45547716 45547946 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 180090 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 553-75 chr16 31925228 31925564 + 3 NA Intergenic L1MDb|LINE|L1 51589 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 589-123 chr5 82439908 82440205 + 3 NA Intergenic Intergenic 160594 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 926-31 chr9 40924286 40924801 + 3 NA Intergenic CER|Satellite|Satellite 4549 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 445-143 chr2 220434878 220435143 + 3 NA Intergenic L1MC1|LINE|L1 -528445 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 314-359 chr3 5277286 5277428 + 3 NA Intergenic Intergenic -27102 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 396-375 chr9 94134034 94134308 + 3 NA Intergenic L1MEc|LINE|L1 -41786 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 575-124 chr3 109791528 109791812 + 3 NA Intergenic LTR33A|LTR|ERVL 188842 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 408-144 chr18 79938491 79938712 + 3 NA intron (NM_025078, intron 3 of 5) L1ME4a|LINE|L1 13052 NM_025078 80148 Hs.288284 NM_025078 ENSG00000122490 SLC66A2 PQLC1 solute carrier family 66 member 2 protein-coding 383-239 chr22 47867602 47867791 + 3 NA Intergenic L1ME2|LINE|L1 236022 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 230-105 chr14 33726015 33726128 + 3 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) 17134 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 458-83 chr14 98906257 98906661 + 3 NA Intergenic Intergenic 194846 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 561-27 chr10 104507229 104507531 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -27105 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 866-14 chr12 66101336 66101713 + 3 NA Intergenic Intergenic 29226 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 367-358 chr5 61583234 61583497 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger -54395 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 442-254 chr6 84577833 84578030 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -103002 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 523-127 chr2 45646555 45646793 + 3 NA Intergenic Intergenic -5001 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 763-10 chr11 87884368 87884799 + 3 NA Intergenic Intergenic -165172 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 496-299 chr8 137546530 137546731 + 3 NA Intergenic Intergenic -133042 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 483-172 chr3 109849331 109849519 + 3 NA Intergenic L1M1|LINE|L1 246597 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 393-394 chrX 69941884 69942120 + 3 NA intron (NM_001005609, intron 1 of 7) L1MA3|LINE|L1 -80855 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 695-23 chr11 72489077 72489561 + 3 NA Intergenic L1MDa|LINE|L1 -54635 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 357-79 chr12 14473118 14473266 + 3 NA intron (NM_181352, intron 10 of 14) L1M4a1|LINE|L1 87911 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 497-37 chr11 34004449 34004689 + 3 NA Intergenic Intergenic -47162 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 767-18 chr19 44480546 44480897 + 3 NA intron (NM_001278508, intron 2 of 3) Tigger4b|DNA|TcMar-Tigger 19801 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 544-46 chr11 91180505 91180709 + 3 NA Intergenic Intergenic -311405 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 968-15 chr3 137476352 137476821 + 3 NA Intergenic L2a|LINE|L2 -287729 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 315-274 chr20 32996822 32997004 + 3 NA intron (NM_080675, intron 6 of 12) (ATCC)n|Simple_repeat|Simple_repeat 7520 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 174-31 chr12 64487507 64487579 + 3 NA intron (NM_013254, intron 11 of 20) intron (NM_013254, intron 11 of 20) 35423 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 378-179 chr17 71863706 71863969 + 3 NA Intergenic Intergenic 162142 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 780-66 chr8 114860492 114860888 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 807323 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 607-25 chr11 41517174 41517472 + 3 NA Intergenic Intergenic -57671 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 467-246 chr6 56237874 56238136 + 3 NA intron (NM_001318751, intron 1 of 30) intron (NM_001318751, intron 1 of 30) 9575 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 290-432 chr7 87144573 87144712 + 3 NA Intergenic L2|LINE|L2 7675 NR_136252 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 777-36 chr20 50484243 50484716 + 3 NA Intergenic MER20|DNA|hAT-Charlie -25842 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 412-336 chr8 135477288 135477441 + 3 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 19908 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 437-4 chr1 49135917 49136138 + 3 NA intron (NM_001323575, intron 4 of 12) L1ME4a|LINE|L1 -121384 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 625-56 chr2 183932343 183932698 + 3 NA Intergenic Intergenic -446455 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 1521-10 chr7 57471070 57472136 + 3 NA 3' UTR (NM_001159279, exon 4 of 4) 3' UTR (NM_001159279, exon 4 of 4) 21426 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 584-62 chr18 61069707 61070040 + 3 NA Intergenic Intergenic -263557 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 157-137 chr9 29089699 29089767 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 122566 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 761-67 chr7 83113736 83114015 + 3 NA intron (NM_033026, intron 3 of 24) L2a|LINE|L2 49009 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 501-129 chr20 17736704 17737012 + 3 NA TTS (NM_178477) TTS (NM_178477) 36910 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 372-362 chr4 67485659 67485876 + 3 NA intron (NR_155754, intron 17 of 18) MIR|SINE|MIR 59736 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 866-33 chr5 25443048 25443454 + 3 NA Intergenic L1M4c|LINE|L1 252298 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 988-20 chr20 42583986 42584325 + 3 NA intron (NM_133170, intron 7 of 31) MLT1H1|LTR|ERVL-MaLR -101328 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 430-108 chr16 83914753 83914949 + 3 NA intron (NM_012213, intron 4 of 4) intron (NM_012213, intron 4 of 4) 15736 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 264-175 chr18 38005829 38005988 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 348773 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 257-214 chr2 163927255 163927423 + 3 NA Intergenic L1PA15|LINE|L1 -191331 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 299-157 chr16 25305345 25305523 + 3 NA Intergenic L1M5|LINE|L1 -47589 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 795-3 chr1 86287169 86287570 + 3 NA Intergenic Intergenic 70318 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 629-111 chr6 40542952 40543328 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 44224 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 475-147 chr2 144967139 144967428 + 3 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 299316 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 368-216 chr19 29481491 29481732 + 3 NA intron (NR_040029, intron 1 of 9) MER87B|LTR|ERV1 44141 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 389-393 chrX 75743715 75743925 + 3 NA promoter-TSS (NR_030737) promoter-TSS (NR_030737) -741 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 359-408 chr5 115025221 115025398 + 3 NA Intergenic L2c|LINE|L2 144599 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 559-68 chr16 74372251 74372597 + 3 NA Intergenic MIRb|SINE|MIR -4169 NR_026950 283922 Hs.558726 NR_026950 ENSG00000214331 LOC283922 - pyruvate dehydrogenase phosphatase regulatory subunit pseudogene pseudo 682-8 chr10 18946774 18947218 + 3 NA Intergenic L1MC1|LINE|L1 -101805 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 463-56 chr11 41853864 41854066 + 3 NA Intergenic Intergenic 139397 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 735-50 chr20 11563750 11564039 + 3 NA Intergenic Intergenic -290511 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 954-47 chr9 38100498 38100914 + 3 NA Intergenic L1MB7|LINE|L1 -31479 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 1421-3 chr8 129503965 129504743 + 3 NA intron (NR_130917, intron 1 of 3) L1MDa|LINE|L1 -20212 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 1067-6 chr19 45921157 45921680 + 3 NA Intergenic L1M5|LINE|L1 -6640 NM_001029861 339345 Hs.434218 NM_001029861 ENSG00000188425 NANOS2 NOS2|ZC2HC12B nanos C2HC-type zinc finger 2 protein-coding 468-3 chr1 57965093 57965303 + 3 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 104617 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 555-121 chr21 46583996 46584318 + 3 NA Intergenic L1M4b|LINE|L1 20925 NM_006272 6285 Hs.422181 NM_006272 ENSG00000160307 S100B NEF|S100|S100-B|S100beta S100 calcium binding protein B protein-coding 527-68 chr13 29611877 29612135 + 3 NA Intergenic LTR88c|LTR|Gypsy? -16318 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 493-60 chr12 43249601 43249887 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 94429 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 605-13 chr10 53930910 53931285 + 3 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -555133 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 468-340 chr9 104357655 104357844 + 3 NA Intergenic AluSz|SINE|Alu 87520 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 414-124 chr17 72087474 72087667 + 3 NA intron (NR_103738, intron 2 of 6) (ATAATAT)n|Simple_repeat|Simple_repeat 15237 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 442-163 chr20 62103418 62103596 + 3 NA Intergenic Intergenic -18968 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 472-50 chr11 129656433 129656608 + 3 NA Intergenic L1PA13|LINE|L1 -39251 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 270-428 chr9 78519254 78519411 + 3 NA Intergenic L1M4|LINE|L1 222207 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 659-66 chr21 34014319 34014558 + 3 NA Intergenic AluSz|SINE|Alu 38056 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 543-213 chr6 45599774 45600060 + 3 NA Intergenic L1M4a2|LINE|L1 177642 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 581-65 chr18 13167135 13167346 + 3 NA Intergenic L1PB1|LINE|L1 -51520 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 484-228 chr5 143794208 143794444 + 3 NA Intergenic Intergenic -17835 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 438-243 chr6 84871634 84871860 + 3 NA Intergenic Intergenic -107149 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 581-38 chr13 74851544 74851801 + 3 NA Intergenic L3|LINE|CR1 298829 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 608-110 chr4 65232751 65233100 + 3 NA Intergenic Intergenic -228425 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 446-272 chr7 15322756 15322968 + 3 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 239153 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 988-15 chr2 79412524 79412931 + 3 NA Intergenic L1PA3|LINE|L1 88117 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 419-88 chr14 46155236 46155541 + 3 NA intron (NR_102702, intron 1 of 3) MSTD|LTR|ERVL-MaLR 91229 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 569-168 chr7 52172628 52172835 + 3 NA Intergenic Intergenic -779475 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 471-151 chr20 46756911 46757128 + 3 NA Intergenic Intergenic 47370 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 456-83 chr13 100811464 100811738 + 3 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 103276 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 518-28 chr10 44219734 44220018 + 3 NA Intergenic L1M2|LINE|L1 -72874 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 1003 chr1 162912802 162913527 + 3 NA Intergenic L1M4|LINE|L1 -44349 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 468-20 chr10 10376637 10376806 + 3 NA Intergenic Intergenic 85628 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 404-119 chr16 62170814 62171042 + 3 NA Intergenic L1PA17|LINE|L1 -134490 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 645-70 chr20 48807488 48807811 + 3 NA intron (NM_020820, intron 1 of 39) L1ME3G|LINE|L1 20350 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 1006-27 chr7 36088188 36088668 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -6882 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 304-15 chr1 100192391 100192519 + 3 NA 3' UTR (NM_001918, exon 11 of 11) 3' UTR (NM_001918, exon 11 of 11) -14182 NM_001256387 127495 Hs.44277 NM_144620 ENSG00000122477 LRRC39 - leucine rich repeat containing 39 protein-coding 460-158 chr2 206637220 206637547 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -6844 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 888-11 chr14 81858629 81859204 + 3 NA Intergenic Intergenic -115778 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 561-208 chr8 120390690 120390966 + 3 NA Intergenic L1PB3|LINE|L1 54322 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 705-46 chr19 36496533 36496894 + 3 NA Intergenic Intergenic 7086 NR_036504 728752 Hs.729762 NR_036504 ENSG00000267309 LOC728752 - uncharacterized LOC728752 ncRNA 946-3 chr11 106222380 106222759 + 3 NA Intergenic LTR10B2|LTR|ERV1 -27450 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 470-12 chr1 187939052 187939272 + 3 NA Intergenic Intergenic 495534 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 673-61 chr2 100314792 100315199 + 3 NA intron (NM_198461, intron 1 of 11) L1ME3|LINE|L1 7738 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 645-68 chr20 33118919 33119297 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR 37596 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 259-255 chr3 96399540 96399653 + 3 NA Intergenic Intergenic 39632 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 694-63 chr2 60661190 60661625 + 3 NA Intergenic Intergenic -94861 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 475-42 chr11 84786950 84787215 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -66140 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 462-148 chr2 152870841 152871126 + 3 NA Intergenic Intergenic 152346 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 456-210 chr3 130844856 130845188 + 3 NA Intergenic Intergenic -5573 NM_001199180 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 636-153 chr8 135699512 135699921 + 3 NA Intergenic L1MA4|LINE|L1 242260 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 399-315 chr8 131557279 131557479 + 3 NA Intergenic L1MA3|LINE|L1 -346714 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 449-21 chr1 221455067 221455335 + 3 NA Intergenic Intergenic -118905 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 575-54 chr14 70484956 70485313 + 3 NA Intergenic L1MA6|LINE|L1 -1378 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 310-292 chr20 45669468 45669649 + 3 NA intron (NM_147197, intron 1 of 4) intron (NM_147197, intron 1 of 4) 681 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 497-27 chr10 94029977 94030200 + 3 NA intron (NM_001288989, intron 1 of 32) L1MEc|LINE|L1 36157 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 543-269 chrX 56540814 56541128 + 3 NA Intergenic L1M1|LINE|L1 -22622 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 558-219 chr8 123728819 123729089 + 3 NA intron (NM_004306, intron 1 of 10) intron (NM_004306, intron 1 of 10) 8439 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 594-81 chr2 209834196 209834402 + 3 NA intron (NM_032504, intron 17 of 63) intron (NM_032504, intron 17 of 63) 62306 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 488-188 chr4 41967221 41967384 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -14454 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 547-224 chr7 98064231 98064474 + 3 NA Intergenic FRAM|SINE|Alu -42510 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 280-414 chr8 98609072 98609222 + 3 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 182189 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 579-6 chr1 172773166 172773604 + 3 NA Intergenic L2a|LINE|L2 114282 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 444-163 chr3 173538598 173538813 + 3 NA intron (NM_014932, intron 2 of 6) ERVL-B4-int|LTR|ERVL -45729 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 489-6 chr1 73561146 73561411 + 3 NA Intergenic L1MA4|LINE|L1 -113401 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 816-39 chr5 167687031 167687338 + 3 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -67745 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 648-111 chr5 45920406 45920853 + 3 NA Intergenic ALR/Alpha|Satellite|centr -224249 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 498-109 chr18 71367362 71367533 + 3 NA Intergenic Intergenic 211509 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 361-172 chr17 61617246 61617402 + 3 NA Intergenic Intergenic -26105 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 781-62 chr8 84795450 84795842 + 3 NA intron (NM_001354322, intron 3 of 6) intron (NM_001354322, intron 3 of 6) 89719 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 359-84 chr11 30175577 30175743 + 3 NA Intergenic Intergenic -55354 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 389-29 chr10 31552308 31552523 + 3 NA Intergenic L2c|LINE|L2 -152660 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 517-281 chr8 132430540 132430768 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 16608 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 503-37 chr10 82716787 82716985 + 3 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -483966 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 786-61 chr7 52002457 52002920 + 3 NA Intergenic LTR39|LTR|ERV1 -609432 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 428-125 chr2 56944040 56944252 + 3 NA Intergenic L1M1|LINE|L1 -758376 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 613-86 chr3 139182265 139182637 + 3 NA Intergenic MIR3|SINE|MIR 51071 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 354-32 chr1 207649697 207649837 + 3 NA intron (NM_175710, intron 1 of 11) L2b|LINE|L2 4634 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 939-17 chr22 34642820 34643484 + 3 NA Intergenic Intergenic 354764 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 508-47 chr12 63319072 63319375 + 3 NA Intergenic Intergenic -166413 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 397-15 chr1 179505202 179505521 + 3 NA intron (NM_144696, intron 20 of 25) intron (NM_144696, intron 20 of 25) 70587 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 543-230 chr7 62653931 62654153 + 3 NA Intergenic ALR/Alpha|Satellite|centr 650014 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 367-316 chr4 23811049 23811249 + 3 NA intron (NM_001330752, intron 11 of 13) intron (NM_001330752, intron 11 of 13) 70143 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 514-239 chr5 144296318 144296559 + 3 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 91047 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 889-12 chr14 47568882 47569312 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 105857 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 538-39 chr11 50606540 50606827 + 3 NA Intergenic ALR/Alpha|Satellite|centr 197536 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 459-225 chr4 169377146 169377368 + 3 NA Intergenic L1MA4|LINE|L1 -106301 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 617-54 chr18 40872767 40873051 + 3 NA Intergenic Intergenic 647768 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 493-217 chr4 20108349 20108583 + 3 NA Intergenic Intergenic -143439 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 287-317 chr5 75407289 75407398 + 3 NA intron (NM_031361, intron 8 of 16) MamRTE1|LINE|RTE-BovB 70123 NM_000859 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 487-9 chr1 59243683 59243880 + 3 NA Intergenic Intergenic -53032 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 515-231 chr6 40563989 40564256 + 3 NA intron (NM_020737, intron 1 of 2) MIRb|SINE|MIR 23242 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 822-24 chr18 79844489 79844930 + 3 NA Intergenic L1MD1|LINE|L1 -18959 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 400-290 chr5 98008036 98008205 + 3 NA Intergenic MIRc|SINE|MIR 153119 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 520-173 chr21 27770195 27770458 + 3 NA Intergenic (TTCT)n|Simple_repeat|Simple_repeat 47947 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 559-149 chr5 120120817 120121019 + 3 NA Intergenic Intergenic -343360 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 543-141 chr2 224674262 224674610 + 3 NA Intergenic Intergenic -89039 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 651-108 chr7 53307363 53307787 + 3 NA Intergenic Intergenic 271942 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 236-7 chr1 55981766 55981909 + 3 NA Intergenic Intergenic 36750 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 578-46 chr12 238818 239134 + 3 NA intron (NM_001190997, intron 2 of 12) L2a|LINE|L2 18323 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 274-115 chr14 30926488 30926648 + 3 NA intron (NM_001083893, intron 8 of 17) intron (NM_001083893, intron 8 of 17) -36760 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 489-54 chr12 45012072 45012256 + 3 NA Intergenic Intergenic 38935 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 536-152 chr20 62106232 62106672 + 3 NA Intergenic AluSq2|SINE|Alu -16023 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 820-30 chr2 128799415 128799855 + 3 NA Intergenic Intergenic -64965 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 286-267 chr3 18103669 18103828 + 3 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 141196 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 631-120 chr7 89180006 89180387 + 3 NA intron (NM_181646, intron 1 of 3) L1MA3|LINE|L1 -384459 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 529-23 chr10 129254495 129254909 + 3 NA Intergenic (CTCTCC)n|Simple_repeat|Simple_repeat -212539 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 452-243 chr7 17510913 17511264 + 3 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 47821 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 519-145 chr3 61694452 61694692 + 3 NA intron (NM_002841, intron 1 of 29) L1ME4b|LINE|L1 133001 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 466-233 chr6 145551827 145552138 + 3 NA Intergenic L1MEd|LINE|L1 134895 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 488-22 chr10 28845026 28845202 + 3 NA Intergenic L2a|LINE|L2 -1294 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 411-162 chr20 47290930 47291161 + 3 NA intron (NM_001281774, intron 7 of 23) MIRb|SINE|MIR -27457 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 464-79 chr15 91493653 91493872 + 3 NA non-coding (NR_110106, exon 4 of 4) non-coding (NR_110106, exon 4 of 4) 30423 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 359-245 chr2 126991453 126991668 + 3 NA Intergenic L1MDa|LINE|L1 90505 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 230-245 chr3 166851017 166851110 + 3 NA Intergenic L1ME3F|LINE|L1 -47620 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 318-559 chr8 132972799 132972989 + 3 NA intron (NM_003235, intron 34 of 47) MLT1N2|LTR|ERVL-MaLR 73687 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 393-24 chr1 192689675 192689819 + 3 NA Intergenic Intergenic -26581 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 932-4 chr11 109565906 109566375 + 3 NA Intergenic L1PBa|LINE|L1 143950 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 553-189 chr5 25230951 25231164 + 3 NA intron (NR_136209, intron 1 of 3) L1M2|LINE|L1 40104 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 237-203 chr2 228213008 228213156 + 3 NA Intergenic L1MC4|LINE|L1 -31395 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 739-6 chr1 175827944 175828371 + 3 NA Intergenic FLAM_C|SINE|Alu -49186 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 1102-19 chr8 133412780 133413483 + 3 NA Intergenic L1M3|LINE|L1 -115827 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 501-115 chr2 124396739 124396987 + 3 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 371576 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 327-272 chr2 138807277 138807401 + 3 NA Intergenic L1ME1|LINE|L1 -26949 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 321-341 chr21 15373811 15373969 + 3 NA Intergenic Intergenic -308890 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 575-92 chr2 142379484 142379834 + 3 NA Intergenic Intergenic -247958 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 821-40 chr4 96481608 96481981 + 3 NA intron (NR_147149, intron 2 of 3) L1MA3|LINE|L1 171091 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 568-112 chr2 129541231 129541532 + 3 NA Intergenic L1M4|LINE|L1 -267490 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 226-196 chr20 6702230 6702340 + 3 NA Intergenic Intergenic 33851 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 1103-11 chr6 73901354 73902092 + 3 NA Intergenic L1M2|LINE|L1 -167728 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 419-52 chr11 47710219 47710378 + 3 NA intron (NM_024783, intron 4 of 18).2 intron (NM_024783, intron 4 of 18).2 5071 NM_024783 79841 Hs.147377 NM_024783 ENSG00000165923 AGBL2 CCP2 ATP/GTP binding protein like 2 protein-coding 441-173 chr4 12131271 12131440 + 3 NA Intergenic L1MA9|LINE|L1 -92096 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 455-131 chr2 124441466 124441668 + 3 NA intron (NM_130773, intron 5 of 23) intron (NM_130773, intron 5 of 23) 416280 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 316-588 chr9 85396602 85396761 + 3 NA Intergenic MIR|SINE|MIR 345348 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 389-201 chr20 6084375 6084659 + 3 NA intron (NM_017671, intron 12 of 14) intron (NM_017671, intron 12 of 14) -30457 NM_152611 164312 Hs.149133 NM_152611 ENSG00000125872 LRRN4 C20orf75|NLRR-4|NLRR4|dJ1056H1.1 leucine rich repeat neuronal 4 protein-coding 651-128 chr9 23361000 23361374 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 311212 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 302-348 chr5 51393505 51393672 + 3 NA exon (NM_002202, exon 6 of 6) exon (NM_002202, exon 6 of 6) 10140 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 388-343 chr8 77555592 77555841 + 3 NA Intergenic L1MA6|LINE|L1 105019 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 306-107 chr12 64919622 64919781 + 3 NA intron (NR_033988, intron 2 of 2) MLT1A0|LTR|ERVL-MaLR 35927 NR_033988 400046 Hs.591032 NR_033988 ENSG00000255693 LINC02389 - long intergenic non-protein coding RNA 2389 ncRNA 627-111 chr7 48233360 48233775 + 3 NA intron (NM_152701, intron 7 of 61) L1ME3G|LINE|L1 62109 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 545-235 chr8 79340670 79340968 + 3 NA Intergenic MLT1E-int|LTR|ERVL-MaLR 8631 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 289-506 chrX 100109272 100109397 + 3 NA Intergenic G-rich|Low_complexity|Low_complexity 300939 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 453-308 chrX 98497050 98497255 + 3 NA Intergenic L2b|LINE|L2 -932617 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 456-16 chr1 192267461 192267808 + 3 NA Intergenic L2c|LINE|L2 -49358 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 588-90 chr21 29261573 29261883 + 3 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -37194 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 613-83 chr3 96695191 96695465 + 3 NA Intergenic L1MA2|LINE|L1 -119266 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 375-216 chr2 116322086 116322219 + 3 NA Intergenic Intergenic 978337 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 170-49 chr14 75534017 75534109 + 3 NA intron (NM_006399, intron 2 of 2) intron (NM_006399, intron 2 of 2) 11594 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 523-136 chr2 107761285 107761514 + 3 NA intron (NR_126370, intron 2 of 4) MLT2C2|LTR|ERVL 7287 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 1276-6 chr7 6679075 6679826 + 3 NA Intergenic Intergenic 27497 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 703-69 chr4 126526129 126526622 + 3 NA Intergenic MLT1G-int|LTR|ERVL-MaLR 1019116 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 582-13 chr11 30665049 30665320 + 3 NA Intergenic MADE1|DNA|TcMar-Mariner -78831 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 302-179 chr18 2446158 2446309 + 3 NA Intergenic MER4D1|LTR|ERV1 125272 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 366-462 chr8 144568396 144568599 + 3 NA intron (NM_025251, intron 2 of 10) L1ME1|LINE|L1 37198 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 264-390 chr7 81620101 81620248 + 3 NA intron (NR_126026, intron 2 of 8) L3|LINE|CR1 6042 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 750-2 chr1 76696862 76697285 + 3 NA Intergenic L1ME3D|LINE|L1 82194 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 1141-2 chr11 81377447 81377995 + 3 NA Intergenic LTR33C|LTR|ERVL 513115 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 915-4 chr13 96616797 96617414 + 3 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 189876 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 790-55 chr8 119951833 119952358 + 3 NA intron (NM_022783, intron 3 of 8) AluSz6|SINE|Alu 78373 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 751-33 chr2 40575699 40576121 + 3 NA Intergenic Intergenic -63475 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 666-62 chr2 133891787 133892092 + 3 NA Intergenic LTR82A|LTR|ERVL -227996 NM_001371457 495-11 chr1 188192547 188192733 + 3 NA Intergenic L1MD|LINE|L1 749012 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 545-175 chr5 12221237 12221564 + 3 NA Intergenic L1MA3|LINE|L1 -316954 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 639-63 chr2 115694247 115694582 + 3 NA intron (NM_001321912, intron 8 of 25) intron (NM_001321912, intron 8 of 25) 350599 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 484-252 chr7 111156275 111156471 + 3 NA intron (NM_032549, intron 3 of 5) L1ME3|LINE|L1 65246 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 511-187 chr4 31096351 31096631 + 3 NA intron (NM_001173523, intron 2 of 2) X6B_LINE|LINE|CR1 -74653 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 346-251 chr2 117211610 117211851 + 3 NA Intergenic L1ME3D|LINE|L1 -602961 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 879-21 chr4 36061940 36062339 + 3 NA intron (NR_146893, intron 32 of 36) L1MA2|LINE|L1 181800 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 930-31 chr8 46475811 46476405 + 3 NA Intergenic ALR/Alpha|Satellite|centr 141535 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 535-229 chr7 94328766 94329146 + 3 NA Intergenic L2a|LINE|L2 63236 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 1065 chr10 14279874 14280650 + 3 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 50622 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 451-112 chr2 56477077 56477228 + 3 NA Intergenic MER50|LTR|ERV1 -291382 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 605-68 chr21 26912402 26912812 + 3 NA Intergenic Intergenic -41354 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 232-184 chr2 123216590 123216761 + 3 NA Intergenic Intergenic -143194 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 199-46 chr12 48608888 48608968 + 3 NA Intergenic Intergenic -38882 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 456-197 chr3 26968048 26968269 + 3 NA Intergenic L1ME2z|LINE|L1 248365 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 1232-5 chr4 49102238 49102870 + 3 NA Intergenic (CATTC)n|Satellite|Satellite 115912 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 710-14 chr10 72981872 72982346 + 3 NA Intergenic L1MA5A|LINE|L1 -27303 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 540-85 chr16 12866411 12866726 + 3 NA Intergenic AluJr|SINE|Alu -35030 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 650-98 chr5 152985004 152985413 + 3 NA Intergenic Intergenic -12859 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 269-188 chr2 43293893 43294055 + 3 NA intron (NM_001083953, intron 31 of 37) L3|LINE|CR1 66763 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 318-298 chr2 185944789 185945007 + 3 NA Intergenic L1MA10|LINE|L1 141419 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 393-121 chr16 78527180 78527336 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 427604 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 567-192 chr8 112079881 112080243 + 3 NA Intergenic L1PBa|LINE|L1 -563431 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 1011-9 chr18 62478727 62479171 + 3 NA Intergenic L1MC5|LINE|L1 -44076 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 377-414 chr8 129668022 129668166 + 3 NA intron (NR_130917, intron 1 of 3) L1ME1|LINE|L1 12145 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 386-393 chrX 155219530 155219762 + 3 NA intron (NM_001303545, intron 1 of 5) intron (NM_001303545, intron 1 of 5) 3186 NM_003372 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 412-188 chr20 60624573 60624821 + 3 NA Intergenic Intergenic 60135 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 436-84 chr14 51109381 51109621 + 3 NA Intergenic Intergenic -13797 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 513-253 chr6 151561719 151561957 + 3 NA intron (NM_025059, intron 5 of 10) L1PA17|LINE|L1 67821 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 640-149 chr9 135235656 135235993 + 3 NA Intergenic L1MEc|LINE|L1 54215 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 747-10 chr10 116034469 116034910 + 3 NA Intergenic L1M4b|LINE|L1 160100 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 678-43 chr18 7510351 7510602 + 3 NA Intergenic L2|LINE|L2 -49470 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 633-88 chr4 67917956 67918417 + 3 NA intron (NM_001114387, intron 8 of 9) intron (NM_001114387, intron 8 of 9) -34184 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 476-283 chr9 37838059 37838257 + 3 NA intron (NM_001286810, intron 2 of 6) intron (NM_001286810, intron 2 of 6) 37361 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 829 chr1 11505116 11505521 + 3 NA intron (NM_020780, intron 3 of 20) L2b|LINE|L2 26163 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 557-25 chr10 123403874 123404108 + 3 NA Intergenic MER94|DNA|hAT-Blackjack 249589 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 667-8 chr1 201760143 201760381 + 3 NA intron (NM_001167738, intron 1 of 26) AluSz|SINE|Alu 20362 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 455-19 chr1 221224857 221225126 + 3 NA Intergenic L1MA8|LINE|L1 111305 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 744-40 chr20 23454851 23455242 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -2170 NM_130794 140880 Hs.128100 NM_080830 ENSG00000125831 CST11 CST8L|CTES2|SC13|dJ322G13.6 cystatin 11 protein-coding 234-98 chr14 64158005 64158136 + 3 NA intron (NM_015180, intron 85 of 114) intron (NM_015180, intron 85 of 114) -56074 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 411-207 chr4 87882854 87883092 + 3 NA Intergenic Intergenic 48270 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 682-79 chr5 67726870 67727257 + 3 NA Intergenic Intergenic -66150 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 556-96 chr2 57039635 57039939 + 3 NA Intergenic L1M3f|LINE|L1 -854017 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 366-88 chr11 114125887 114126066 + 3 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 62765 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 326-469 chr6 139720943 139721091 + 3 NA Intergenic Intergenic -50056 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 588-42 chr14 88260472 88260774 + 3 NA intron (NM_138317, intron 2 of 6) MIRb|SINE|MIR 10288 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 1424-4 chr2 54057725 54058669 + 3 NA intron (NM_001320587, intron 3 of 5) intron (NM_001320587, intron 3 of 5) -57418 NM_001320589 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 597-50 chr14 92286423 92286859 + 3 NA Intergenic MIRc|SINE|MIR -35940 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 629-109 chr6 17412996 17413372 + 3 NA intron (NM_006366, intron 1 of 12) intron (NM_006366, intron 1 of 12) 19589 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 476-285 chrUn_KI270442v1 85198 85483 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 549-136 chr3 45150762 45150946 + 3 NA Intergenic L1MEd|LINE|L1 -4432 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 528-31 chr10 33464587 33464903 + 3 NA Intergenic (GTTT)n|Simple_repeat|Simple_repeat -129840 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 642-16 chr11 29215693 29216002 + 3 NA Intergenic Intergenic -378566 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 353-219 chr18 80054866 80055063 + 3 NA Intergenic L1PB4|LINE|L1 -12292 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 751-34 chr2 79339421 79339889 + 3 NA Intergenic MIRc|SINE|MIR 161189 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 403-141 chr18 64338525 64338719 + 3 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -78567 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 879-3 chr12 9760459 9760995 + 3 NA intron (NM_001781, intron 1 of 4) intron (NM_001781, intron 1 of 4) 174 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 866-38 chr5 107783124 107783599 + 3 NA Intergenic Intergenic -112424 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 876-22 chr20 13890858 13891410 + 3 NA intron (NR_073206, intron 6 of 20) L1M4c|LINE|L1 99480 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 698-92 chr9 109651784 109652145 + 3 NA intron (NM_001037293, intron 1 of 6) intron (NM_001037293, intron 1 of 6) 11176 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 498-240 chr6 156074997 156075170 + 3 NA Intergenic L2a|LINE|L2 128286 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 477-121 chr17 69123774 69123989 + 3 NA intron (NM_080284, intron 9 of 38) intron (NM_080284, intron 9 of 38) 18014 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 1084-19 chr5 92178455 92178973 + 3 NA Intergenic Intergenic -795397 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 499-19 chr1 247704139 247704397 + 3 NA Intergenic Intergenic 8487 NM_001005286 343169 Hs.591529 NM_001005286 ENSG00000169214 OR6F1 OR1-34|OR1-38|OST731 olfactory receptor family 6 subfamily F member 1 protein-coding 855-29 chr2 117148259 117148623 + 3 NA Intergenic L1MA4|LINE|L1 -666250 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 313-243 chr2 40688643 40688861 + 3 NA Intergenic Intergenic -176317 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 490-273 chr7 90793189 90793576 + 3 NA intron (NM_012395, intron 4 of 13) intron (NM_012395, intron 4 of 13) 83566 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 692-75 chr5 11165227 11165670 + 3 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) -404214 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 264-218 chr2 155018568 155018702 + 3 NA Intergenic L1MCa|LINE|L1 319940 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 1186-6 chr13 101786480 101787204 + 3 NA intron (NM_175929, intron 3 of 4) intron (NM_175929, intron 3 of 4) 129803 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 1608-3 chr5 19846077 19847018 + 3 NA intron (NM_001349562, intron 2 of 13) MER8|DNA|TcMar-Tigger 39725 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 473-111 chr18 133472 133635 + 3 NA Intergenic Intergenic -21214 NR_107045 102466878 NR_107045 ENSG00000277521 MIR8078 hsa-mir-8078 microRNA 8078 ncRNA 584-129 chr5 14940451 14940675 + 3 NA Intergenic AluSq2|SINE|Alu -68785 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 449-267 chr8 40241492 40241734 + 3 NA Intergenic L1M1|LINE|L1 88131 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 615-99 chr4 154953884 154954222 + 3 NA Intergenic MER41-int|LTR|ERV1 172548 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 452-232 chr6 64290983 64291234 + 3 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 484272 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 482-193 chr4 132573320 132573691 + 3 NA Intergenic L1MA8|LINE|L1 -17584 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 535-65 chr13 59157241 59157554 + 3 NA Intergenic Intergenic -855321 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 544-82 chr16 17822187 17822517 + 3 NA Intergenic Intergenic -351392 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 455-271 chr8 59290795 59290993 + 3 NA Intergenic Intergenic 171684 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 430-341 chrUn_KI270538v1 23552 23759 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 733-18 chr15 87471787 87472120 + 3 NA Intergenic L1MC5|LINE|L1 -104976 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 522-134 chr2 88276850 88277127 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 103849 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 212-324 chr8 83185773 83185906 + 3 NA Intergenic Intergenic -217919 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 524-245 chr7 122725118 122725340 + 3 NA intron (NM_001167940, intron 2 of 29) Charlie4a|DNA|hAT-Charlie -22307 NM_198085 378925 Hs.675191 NM_198085 ENSG00000235631 RNF148 - ring finger protein 148 protein-coding 700-65 chr3 109447634 109448056 + 3 NA intron (NR_109841, intron 2 of 4) L1M1|LINE|L1 37855 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 624-22 chr11 55065884 55066204 + 3 NA Intergenic ALR/Alpha|Satellite|centr -196111 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 422-133 chr19 12465534 12465721 + 3 NA exon (NM_152601, exon 4 of 4) exon (NM_152601, exon 4 of 4) 19189 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 483-242 chr7 47027540 47027781 + 3 NA Intergenic Intergenic -330538 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 385-159 chr19 42580451 42580605 + 3 NA 3' UTR (NM_001816, exon 6 of 6) 3' UTR (NM_001816, exon 6 of 6) 14396 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 860-19 chr17 3428477 3429045 + 3 NA Intergenic L1MA5|LINE|L1 5080 NM_003554 8388 Hs.533931 NM_003554 ENSG00000127780 OR1E2 OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529 olfactory receptor family 1 subfamily E member 2 protein-coding 801-27 chr19 37890461 37891140 + 3 NA intron (NM_031951, intron 5 of 5) L1ME1|LINE|L1 15794 NM_001291088 83889 Hs.664194 NM_031951 ENSG00000171804 WDR87 NYD-SP11 WD repeat domain 87 protein-coding 126-5 chr1 182522400 182522444 + 3 NA intron (NM_001366934, intron 11 of 22) L1ME3Cz|LINE|L1 66834 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 429-264 chr6 164596052 164596300 + 3 NA Intergenic Intergenic 225887 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 686-81 chr8 105404961 105405344 + 3 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 85609 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 423-202 chr4 90336759 90336999 + 3 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 101848 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 667-33 chr15 72157844 72158125 + 3 NA Intergenic L1MB3|LINE|L1 39581 NM_145204 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 301-14 chr1 162897926 162898154 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -29225 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 377-30 chr1 229398858 229399000 + 3 NA Intergenic L1MB5|LINE|L1 35167 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 584-105 chr3 114889280 114889554 + 3 NA intron (NM_001164343, intron 3 of 11) intron (NM_001164343, intron 3 of 11) 11208 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 1038-8 chr15 91813262 91813860 + 3 NA Intergenic L1MC1|LINE|L1 -40147 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 515-95 chr18 12577749 12578088 + 3 NA intron (NM_020148, intron 2 of 15) L1ME2|LINE|L1 78814 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 626-10 chr1 198003285 198003729 + 3 NA Intergenic MER110-int|LTR|ERV1 86135 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 509-260 chr8 124990879 124991178 + 3 NA Intergenic ERVL-int|LTR|ERVL 7170 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 859-30 chr4 126008206 126008742 + 3 NA Intergenic L1MD1|LINE|L1 501215 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 222-53 chr10 116249885 116250019 + 3 NA intron (NM_005264, intron 4 of 10) L2a|LINE|L2 5843 NM_001348099 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 451-2 chr1 15400853 15401048 + 3 NA Intergenic Intergenic -8938 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 610-120 chr3 158992041 158992331 + 3 NA Intergenic Intergenic -77066 NM_001197113 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 571-22 chr10 88758803 88759018 + 3 NA Intergenic Intergenic -2496 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 295-149 chr15 43964111 43964248 + 3 NA intron (NM_032892, intron 1 of 13) intron (NM_032892, intron 1 of 13) -86008 NR_003571 728758 Hs.658099 NR_003571 PIN4P1 - peptidylprolyl cis/trans isomerase, NIMA-interacting 4 pseudogene 1 pseudo 490-22 chr1 164960260 164960513 + 3 NA Intergenic Intergenic -185745 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 605-91 chr5 16828884 16829233 + 3 NA intron (NM_012334, intron 2 of 40) intron (NM_012334, intron 2 of 40) 107230 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 479-210 chr5 179328841 179329023 + 3 NA intron (NM_014244, intron 2 of 21) intron (NM_014244, intron 2 of 21) 16529 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 381-294 chr5 7166773 7166977 + 3 NA Intergenic Intergenic 102479 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 422-236 chr5 26422864 26423151 + 3 NA Intergenic Intergenic 615579 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 466-54 chr11 112872539 112872728 + 3 NA Intergenic Intergenic -88787 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 141-23 chr14 62438904 62438974 + 3 NA Intergenic L1M2a|LINE|L1 -298966 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 674-54 chr21 44650877 44651317 + 3 NA intron (NM_144991, intron 1 of 11) intron (NM_144991, intron 1 of 11) 3562 NM_198698 386684 Hs.689664 NM_198698 ENSG00000212933 KRTAP12-4 KRTAP12.4 keratin associated protein 12-4 protein-coding 459-282 chr7 70908152 70908341 + 3 NA Intergenic PABL_A|LTR|ERV1 -223898 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 398-84 chr12 132291854 132292045 + 3 NA intron (NM_001122636, intron 1 of 10) intron (NM_001122636, intron 1 of 10) 16558 NR_024563 100130238 Hs.536338 NR_024563 LOC100130238 - uncharacterized LOC100130238 ncRNA 1547-5 chr8 88758129 88759107 + 3 NA Intergenic Intergenic -431135 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 588-29 chr12 76680950 76681265 + 3 NA Intergenic MER68B|LTR|ERVL -82967 NM_015336 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 891-36 chr6 156518996 156519448 + 3 NA Intergenic HAL1M8|LINE|L1 140472 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 406-153 chr2 124342881 124343048 + 3 NA intron (NM_130773, intron 3 of 23) LTR49-int|LTR|ERV1 317677 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 508-37 chr11 15253340 15253622 + 3 NA Intergenic Intergenic 104379 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 628-35 chr12 41002899 41003112 + 3 NA intron (NM_001843, intron 17 of 23) L1PA13|LINE|L1 94648 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 807-25 chr2 84160060 84160459 + 3 NA Intergenic Intergenic -130423 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 587-159 chr8 30469064 30469514 + 3 NA intron (NM_001008710, intron 1 of 8) intron (NM_001008710, intron 1 of 8) -83888 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 394-159 chr2 34401188 34401429 + 3 NA Intergenic Intergenic -276249 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 526-188 chr4 123978937 123979352 + 3 NA Intergenic L1M4a1|LINE|L1 204880 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 370-58 chr10 84554609 84554807 + 3 NA Intergenic Intergenic 129539 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 431-143 chr2 116538224 116538412 + 3 NA Intergenic MIRc|SINE|MIR 1194503 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 516-202 chr5 25362577 25362821 + 3 NA Intergenic L1MA2|LINE|L1 171746 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 559-199 chr9 84199070 84199326 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 135755 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 656-99 chr5 161342317 161342595 + 3 NA intron (NM_000813, intron 6 of 9) MER103C|DNA|hAT-Charlie 205668 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 593-169 chrX 137671601 137672015 + 3 NA Intergenic L1PA10|LINE|L1 105681 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 226-50 chr10 118636997 118637136 + 3 NA Intergenic Intergenic -41418 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 367-51 chr10 59384393 59384627 + 3 NA Intergenic Intergenic -21329 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 1045-25 chr8 134016070 134016601 + 3 NA Intergenic Intergenic 129839 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 581-73 chr2 22919057 22919311 + 3 NA Intergenic Intergenic 382705 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 171-49 chr18 55638583 55638697 + 3 NA Intergenic Intergenic -2683 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 707-109 chr8 136131181 136131494 + 3 NA Intergenic Intergenic -399461 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 466-153 chr2 206923559 206923735 + 3 NA Intergenic Intergenic -15871 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 749-82 chr6 70920636 70921018 + 3 NA intron (NM_080742, intron 1 of 3) L1PA13|LINE|L1 36233 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 690-69 chr3 23177299 23177749 + 3 NA Intergenic L1MC5|LINE|L1 25054 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 337-326 chr22 25854157 25854378 + 3 NA intron (NM_001318245, intron 21 of 43) intron (NM_001318245, intron 21 of 43) 112079 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 1731 chr2 42867983 42869261 + 3 NA Intergenic L2a|LINE|L2 -76039 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 674-92 chr7 8698388 8698757 + 3 NA intron (NM_152745, intron 2 of 2) MER20B|DNA|hAT-Charlie 264963 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 168-73 chr21 24032744 24032819 + 3 NA Intergenic Intergenic 288596 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 426-60 chr12 27270979 27271324 + 3 NA intron (NM_015000, intron 1 of 13) MIR|SINE|MIR 26865 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 570-39 chr11 38827519 38827874 + 3 NA Intergenic L1PA17|LINE|L1 178838 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 599-50 chr18 69274697 69274925 + 3 NA Intergenic MER65-int|LTR|ERV1 -126077 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 403-194 chr3 35221887 35222110 + 3 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 172025 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 392-232 chr4 77036607 77036804 + 3 NA 3' UTR (NM_018243, exon 10 of 10) 3' UTR (NM_018243, exon 10 of 10) 38205 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 484-123 chr2 48154504 48154694 + 3 NA Intergenic Intergenic -160083 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 566-140 chr4 47751159 47751408 + 3 NA intron (NM_006587, intron 4 of 21) tRNA-Cys-TGY|tRNA|tRNA -80062 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 631-38 chr14 50627695 50628070 + 3 NA intron (NM_015915, intron 11 of 13) intron (NM_015915, intron 11 of 13) 40424 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 615-60 chr2 56442535 56442860 + 3 NA Intergenic L1MA5|LINE|L1 -256927 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 480-308 chr9 24741240 24741459 + 3 NA Intergenic Intergenic -195452 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 439-30 chr10 55863676 55863861 + 3 NA Intergenic Intergenic -235826 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 767-32 chr3 4763304 4763790 + 3 NA intron (NM_001168272, intron 43 of 60) intron (NM_001168272, intron 43 of 60) -11957 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 1237-10 chr8 129011618 129012338 + 3 NA Intergenic Intergenic -45977 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 474-317 chrX 143554920 143555134 + 3 NA Intergenic L3|LINE|CR1 -37552 NM_001009609 139067 Hs.447320 NM_001009609 ENSG00000189252 SPANXN3 CT11.8|SPANX-N3 SPANX family member N3 protein-coding 322-533 chr8 90374606 90374807 + 3 NA intron (NR_051989, intron 3 of 3) L1MDb|LINE|L1 153218 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 555-183 chr7 22227117 22227424 + 3 NA intron (NM_012294, intron 8 of 25) intron (NM_012294, intron 8 of 25) -32460 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 628-73 chr2 102125049 102125347 + 3 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) -16593 NM_001320981 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 156-100 chr7 91686125 91686197 + 3 NA Intergenic Intergenic 194541 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 463-171 chr21 27310696 27310881 + 3 NA Intergenic L1PB4|LINE|L1 -343700 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 795-10 chr10 33967473 33968005 + 3 NA Intergenic L1ME4a|LINE|L1 -195059 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 381-387 chr8 110264392 110264551 + 3 NA Intergenic MIRb|SINE|MIR -288700 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 955-9 chr19 27590607 27591121 + 3 NA Intergenic ALR/Alpha|Satellite|centr -202567 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 534-34 chr10 76563817 76564103 + 3 NA Intergenic L2c|LINE|L2 -324084 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 230-141 chr16 77928642 77928788 + 3 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -93833 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 596-33 chr11 21218773 21219115 + 3 NA intron (NM_201551, intron 13 of 18) L1MA5|LINE|L1 549358 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 176-159 chrX 79191557 79191636 + 3 NA Intergenic L1MB2|LINE|L1 20624 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 385-346 chr6 161475200 161475434 + 3 NA intron (NR_134595, intron 1 of 3) intron (NR_134595, intron 1 of 3) 4340 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 449-150 chr21 20067606 20067913 + 3 NA Intergenic Intergenic -168004 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 393-102 chr14 66660172 66660361 + 3 NA intron (NM_001024218, intron 1 of 21) L1MD1|LINE|L1 152859 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 768-2 chr1 92481281 92481758 + 3 NA intron (NM_001127215, intron 3 of 6) CpG-1333 2435 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 587-66 chr19 9564942 9565230 + 3 NA 3' UTR (NM_001008727, exon 4 of 4) 3' UTR (NM_001008727, exon 4 of 4) 19418 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 638-116 chr5 27390651 27390958 + 3 NA Intergenic Intergenic -81488 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 322-388 chr4 114346518 114346713 + 3 NA Intergenic Intergenic -251787 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 372-18 chr1 99561341 99561466 + 3 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -73599 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 341-160 chr15 27720228 27720460 + 3 NA Intergenic Intergenic 378971 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 771-22 chr14 23900539 23901056 + 3 NA Intergenic MER21C|LTR|ERVL -52973 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 438-114 chr2 37790996 37791283 + 3 NA Intergenic HAL1|LINE|L1 38572 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 540-15 chr1 106398508 106398736 + 3 NA Intergenic Intergenic -370369 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 534-157 chr22 47080195 47080474 + 3 NA intron (NM_001284305, intron 11 of 12) L1ME3B|LINE|L1 -164292 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 374-6 chr1 68911293 68911519 + 3 NA Intergenic Intergenic -144492 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 667-45 chr2 22080866 22081324 + 3 NA Intergenic Intergenic -370443 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 501-255 chr8 65342206 65342444 + 3 NA Intergenic L1PA7|LINE|L1 -161985 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 509-140 chr22 29240908 29241224 + 3 NA intron (NM_001267895, intron 12 of 14) L1MCa|LINE|L1 26915 NR_138044 25807 Hs.106730 NM_012265 ENSG00000100263 RHBDD3 C22orf3|HS984G1A|PTAG rhomboid domain containing 3 protein-coding 458-121 chr2 23337276 23337500 + 3 NA Intergenic L1MA7|LINE|L1 -47791 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 491-4 chr1 101022386 101022667 + 3 NA intron (NM_001077394, intron 2 of 7) intron (NM_001077394, intron 2 of 7) 3258 NM_001077395 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 491-155 chr21 29399796 29400123 + 3 NA Intergenic L1ME1|LINE|L1 27458 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 531-69 chr15 63751774 63752066 + 3 NA intron (NM_003922, intron 8 of 77) intron (NM_003922, intron 8 of 77) 82028 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 505-5 chr1 60568540 60568796 + 3 NA intron (NR_146508, intron 4 of 7) MIRb|SINE|MIR 54017 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 608-49 chr16 23929316 23929664 + 3 NA intron (NM_002738, intron 2 of 16) MIR|SINE|MIR 93507 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 507-202 chr5 101049945 101050123 + 3 NA Intergenic HERV4_I-int|LTR|ERV1 -146752 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 564-114 chr21 29875940 29876284 + 3 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 63884 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 1320-3 chr12 17030854 17031630 + 3 NA Intergenic Intergenic 42495 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 545-182 chr5 46177228 46177521 + 3 NA Intergenic ALR/Alpha|Satellite|centr -480994 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 408-181 chr2 236822264 236822477 + 3 NA Intergenic L2|LINE|L2 233797 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 540-186 chr6 153778700 153778940 + 3 NA Intergenic Intergenic -231676 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 455-292 chr8 139679682 139679925 + 3 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 23320 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 511-11 chr1 163854722 163854956 + 3 NA Intergenic Intergenic -431648 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 727-75 chr7 46267399 46267884 + 3 NA Intergenic Intergenic -346369 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 756-39 chr3 42316997 42317394 + 3 NA Intergenic MER65-int|LTR|ERV1 -51010 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 617-100 chr4 154199385 154199634 + 3 NA Intergenic L1P4a|LINE|L1 292290 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 601-131 chr5 174551349 174551733 + 3 NA Intergenic Intergenic -173041 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 537-141 chr20 43177095 43177363 + 3 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 12677 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 475-246 chr6 161916020 161916338 + 3 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 445202 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 605-129 chr9 79737875 79738189 + 3 NA Intergenic Intergenic -86498 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 336-103 chr11 83619889 83620102 + 3 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 62430 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 719-44 chr21 31572867 31573266 + 3 NA Intergenic Intergenic 13833 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 959-5 chr12 27616472 27617126 + 3 NA intron (NM_001198915, intron 2 of 26) L2|LINE|L2 -79648 NM_001029874 387849 Hs.269836 NM_001029874 ENSG00000174236 REP15 RAB15EP RAB15 effector protein protein-coding 222-166 chr2 25943118 25943223 + 3 NA intron (NM_002254, intron 5 of 7) intron (NM_002254, intron 5 of 7) 39327 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 594-73 chr2 150603547 150603904 + 3 NA Intergenic Intergenic -25172 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 448-116 chr2 118445791 118446008 + 3 NA Intergenic L1ME1|LINE|L1 157067 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 323-517 chr7 112652692 112652913 + 3 NA intron (NR_110158, intron 5 of 7) L1MA9|LINE|L1 30421 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 587-127 chr4 178030776 178030995 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -122949 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 447-196 chr4 71830107 71830314 + 3 NA Intergenic Intergenic -24690 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 488-168 chr3 2460402 2460625 + 3 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 221684 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 405-206 chr3 108905616 108905846 + 3 NA Intergenic LTR50|LTR|ERVL 48115 NM_001363884 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 520-39 chr10 105021054 105021382 + 3 NA intron (NM_014978, intron 4 of 26) MSTD|LTR|ERVL-MaLR -355002 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 559-119 chr3 43337922 43338209 + 3 NA intron (NM_001100594, intron 3 of 5) L1MEd|LINE|L1 13897 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 454-318 chr8 114590467 114590658 + 3 NA Intergenic (AAAAAC)n|Simple_repeat|Simple_repeat 1077451 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 492-28 chr10 89911928 89912167 + 3 NA intron (NR_149079, intron 1 of 1) MLT1J2-int|LTR|ERVL-MaLR 23913 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 483-140 chr20 44262026 44262242 + 3 NA intron (NM_001256740, intron 3 of 3) L2b|LINE|L2 14826 NM_024034 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 704-21 chr13 36020759 36021154 + 3 NA intron (NM_001330071, intron 3 of 16) L1MB7|LINE|L1 110426 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 355-51 chr10 54137211 54137436 + 3 NA intron (NM_001354411, intron 15 of 34) intron (NM_001354411, intron 15 of 34) -348907 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 425-294 chr8 24489716 24489906 + 3 NA TTS (NR_125809) TTS (NR_125809) 25057 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 245-75 chr11 61315933 61316043 + 3 NA intron (NM_001923, intron 12 of 26) L1ME4a|LINE|L1 -17194 NM_001351978 26007 Hs.6278 NM_015533 ENSG00000149476 TKFC DAK|NET45 triokinase and FMN cyclase protein-coding 541-221 chr7 103709543 103709870 + 3 NA intron (NM_005045, intron 8 of 64) intron (NM_005045, intron 8 of 64) -263499 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 470-117 chr2 18071727 18071902 + 3 NA Intergenic Intergenic 193147 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 511-237 chr6 137379740 137379950 + 3 NA Intergenic L1MA9|LINE|L1 114549 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 402-54 chr11 99233401 99233563 + 3 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 212533 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 826-44 chr3 118364809 118365455 + 3 NA Intergenic L1M4b|LINE|L1 -276636 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 521-143 chr20 41196285 41196645 + 3 NA intron (NM_015035, intron 3 of 3) (AT)n|Simple_repeat|Simple_repeat 27442 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 295-63 chr10 131666587 131666735 + 3 NA Intergenic L1MD2|LINE|L1 123538 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 553-14 chr10 16482432 16482765 + 3 NA intron (NM_030664, intron 2 of 5) intron (NM_030664, intron 2 of 5) 39281 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 709-76 chr5 45503040 45503461 + 3 NA intron (NM_021072, intron 2 of 7) L1MC5|LINE|L1 193130 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 339-122 chr12 15430928 15431094 + 3 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 108503 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 578-48 chr12 13677696 13677979 + 3 NA intron (NM_000834, intron 3 of 12) L3|LINE|CR1 -301092 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 539-36 chr11 10045468 10045790 + 3 NA intron (NM_030962, intron 2 of 39) LTR66|LTR|ERVL 206487 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 216-75 chr12 42110076 42110212 + 3 NA intron (NM_173601, intron 3 of 7) intron (NM_173601, intron 3 of 7) 34730 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 775-8 chr1 232895965 232896319 + 3 NA Intergenic MER39|LTR|ERV1 -54469 NR_138026 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 713-78 chr8 104997001 104997498 + 3 NA Intergenic Intergenic -321189 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 415-117 chr2 15944568 15944792 + 3 NA intron (NM_005378, intron 2 of 2) MIRb|SINE|MIR -2247 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 291-179 chr17 70883872 70884113 + 3 NA Intergenic Intergenic 318187 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 683-8 chr10 67035505 67035863 + 3 NA intron (NR_111909, intron 2 of 2) L4_B_Mam|LINE|RTE-X 23418 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 498-273 chr8 98784356 98784550 + 3 NA intron (NM_001256312, intron 3 of 12) L1PA15-16|LINE|L1 41218 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 413-159 chr2 195254415 195254571 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -402465 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 646-74 chr20 62078017 62078388 + 3 NA Intergenic L1MEf|LINE|L1 -12392 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 680-49 chr2 5220567 5220941 + 3 NA Intergenic Intergenic 470364 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 289-49 chr10 22357372 22357486 + 3 NA intron (NM_001253854, intron 3 of 13) intron (NM_001253854, intron 3 of 13) 11933 NM_172242 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 572-77 chr18 7390273 7390488 + 3 NA Intergenic L2a|LINE|L2 70626 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 663-85 chr5 58824760 58825121 + 3 NA intron (NM_138453, intron 3 of 4) intron (NM_138453, intron 3 of 4) 174958 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 311-323 chr22 31363671 31363823 + 3 NA Intergenic MER4A|LTR|ERV1 16988 NR_120386 54944 Hs.648259 NM_017834 LINC01521 - long intergenic non-protein coding RNA 1521 ncRNA 622-103 chr5 28068728 28069060 + 3 NA Intergenic L1PA13|LINE|L1 218771 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 813-2 chr1 190925319 190925683 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 300611 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 466-144 chr2 142305836 142306236 + 3 NA Intergenic Intergenic -174335 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 342-3 chr1 29504656 29504815 + 3 NA Intergenic MIR1_Amn|SINE|MIR -154621 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 490-228 chr5 124379763 124379945 + 3 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 58666 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 724-43 chr2 238671700 238672028 + 3 NA Intergenic L1ME3|LINE|L1 -116365 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 508-110 chr2 108236397 108236678 + 3 NA Intergenic LTR76|LTR|ERV1 -3431 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 474-148 chr2 124150460 124150775 + 3 NA intron (NM_130773, intron 1 of 23) MLT1A0|LTR|ERVL-MaLR 125330 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 296-317 chr3 174761293 174761519 + 3 NA Intergenic Intergenic -97928 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 676-113 chr8 132721013 132721418 + 3 NA intron (NM_144649, intron 7 of 9) L2a|LINE|L2 39367 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 471-117 chr19 27398986 27399318 + 3 NA Intergenic ALR/Alpha|Satellite|centr -394279 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 779-36 chr21 31848713 31849095 + 3 NA Intergenic Intergenic -24116 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 352-85 chr11 100606243 100606440 + 3 NA Intergenic L1PA11|LINE|L1 -80947 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 503-119 chr16 78599078 78599358 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 499564 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 864-49 chr8 91679628 91680107 + 3 NA Intergenic Intergenic 337813 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 735-36 chr19 28790346 28790762 + 3 NA Intergenic Intergenic -62860 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 348-20 chr1 118363572 118363702 + 3 NA Intergenic Intergenic -178409 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 1256-4 chr17 54094024 54094760 + 3 NA Intergenic AluSz6|SINE|Alu 271465 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 631-96 chr4 137668787 137669225 + 3 NA Intergenic Intergenic 123275 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 652-119 chr8 135214808 135215172 + 3 NA Intergenic Intergenic -19141 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 959-22 chr22 44372371 44372831 + 3 NA Intergenic Intergenic -59650 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 541-114 chr2 79516173 79516404 + 3 NA intron (NM_001164883, intron 1 of 16) intron (NM_001164883, intron 1 of 16) 3354 NM_004389 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 551-70 chr17 34859896 34860188 + 3 NA Intergenic Intergenic 101418 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 402-314 chr7 31671187 31671397 + 3 NA Intergenic LTR1D1|LTR|ERV1 -15725 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 645-41 chr17 53911788 53912135 + 3 NA Intergenic L2a|LINE|L2 89034 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 375-445 chr9 32677094 32677354 + 3 NA Intergenic L2|LINE|L2 -41555 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 583-9 chr1 177142573 177142826 + 3 NA intron (NM_207108, intron 1 of 21) intron (NM_207108, intron 1 of 21) 22013 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 236-374 chr8 144518460 144518580 + 3 NA promoter-TSS (NM_004260) promoter-TSS (NM_004260) 528 NM_001272036 9684 Hs.459391 NM_014665 ENSG00000160959 LRRC14 LRRC14A leucine rich repeat containing 14 protein-coding 456-272 chr6 18863986 18864189 + 3 NA Intergenic L1MC3|LINE|L1 292303 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 512-277 chr8 124636679 124636925 + 3 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 91671 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 1459 chr11 88070410 88071021 + 3 NA Intergenic L1MCc|LINE|L1 104728 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 823-15 chr16 82466951 82467308 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -159840 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 505-171 chr20 171152 171449 + 3 NA Intergenic Intergenic 13846 NM_139074 140850 Hs.99362 NM_139074 ENSG00000088782 DEFB127 C20orf73|DEF-27|DEFB-27|DEFB27|bA530N10.2|hBD-27 defensin beta 127 protein-coding 780-15 chr12 29936064 29936567 + 3 NA Intergenic Intergenic -151556 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 488-270 chr8 89017423 89017728 + 3 NA Intergenic L1PB4|LINE|L1 -690092 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 453-106 chr2 17351963 17352138 + 3 NA Intergenic Intergenic 166390 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 608-20 chr11 55401536 55401860 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 33814 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 917-30 chr9 35469613 35470085 + 3 NA intron (NR_003581, intron 12 of 17) intron (NR_003581, intron 12 of 17) -20262 NM_014806 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 793-44 chr5 125116805 125117234 + 3 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 80188 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 748-48 chr2 59616532 59616917 + 3 NA Intergenic L1MB7|LINE|L1 399016 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 380-159 chr18 4664261 4664414 + 3 NA Intergenic L1MB7|LINE|L1 -209030 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 426-120 chr19 57546938 57547128 + 3 NA exon (NM_001277092, exon 4 of 5) exon (NM_001277092, exon 4 of 5) 12830 NM_001277091 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 869-27 chr2 26342568 26342972 + 3 NA intron (NR_135916, intron 1 of 12) intron (NR_135916, intron 1 of 12) 3041 NM_001321975 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 474-72 chr12 131887631 131887888 + 3 NA Intergenic AluSx|SINE|Alu -6863 NM_003565 8408 Hs.47061 NM_003565 ENSG00000177169 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 358-414 chr6 120035872 120036105 + 3 NA Intergenic Intergenic 20809 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 1035-14 chr7 46826691 46827276 + 3 NA Intergenic L1MC3|LINE|L1 -129861 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 289-331 chr4 32072804 32073009 + 3 NA intron (NR_125936, intron 1 of 2) MIR|SINE|MIR -50484 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 483-189 chr4 96739246 96739473 + 3 NA intron (NR_147149, intron 3 of 3) L1MEc|LINE|L1 428656 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 647-22 chr12 103916904 103917289 + 3 NA intron (NR_027249, intron 1 of 15) intron (NR_027249, intron 1 of 15) 13115 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 255-94 chr13 77538614 77538726 + 3 NA intron (NM_003843, intron 1 of 31) intron (NM_003843, intron 1 of 31) 2964 NM_003843 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 282-100 chr12 65145736 65145863 + 3 NA Intergenic Intergenic -23784 NM_014319 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 436-309 chr8 110482927 110483098 + 3 NA Intergenic Intergenic -507241 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 523-212 chr5 8386798 8386972 + 3 NA intron (NR_039984, intron 3 of 5) intron (NR_039984, intron 3 of 5) 70679 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 498-83 chr14 56368370 56368582 + 3 NA Intergenic L1PA11|LINE|L1 -145855 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 400-62 chr11 115891531 115891758 + 3 NA Intergenic Intergenic -131444 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 512-131 chr2 128702569 128702885 + 3 NA Intergenic L1M4b|LINE|L1 -161873 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 440-17 chr1 238820020 238820204 + 3 NA Intergenic L1MC1|LINE|L1 -334095 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 545-102 chr19 51911359 51911588 + 3 NA Intergenic MER58C|DNA|hAT-Charlie -6456 NM_023074 65251 Hs.148322 NM_023074 ENSG00000198093 ZNF649 - zinc finger protein 649 protein-coding 483-278 chr8 141816113 141816336 + 3 NA Intergenic Intergenic -29911 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 420-19 chr1 193955520 193955691 + 3 NA Intergenic Intergenic 650860 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 539-159 chr4 122506287 122506610 + 3 NA Intergenic MamGypLTR3a|LTR|Gypsy -49953 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 702-74 chr5 21397207 21397713 + 3 NA Intergenic L1MC4a|LINE|L1 -62020 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 664-117 chr8 107990005 107990330 + 3 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 91772 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 487-203 chr4 49150877 49151096 + 3 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 164344 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 416-179 chr2 107428690 107428905 + 3 NA Intergenic HAL1|LINE|L1 -79272 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 419-160 chr2 224719410 224719613 + 3 NA Intergenic L1M4|LINE|L1 -134114 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 925-32 chr7 85733462 85733882 + 3 NA Intergenic Intergenic 312550 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 845-11 chr16 53572145 53572529 + 3 NA Intergenic Intergenic -69033 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 394-291 chr6 135965761 135965946 + 3 NA intron (NM_018945, intron 2 of 12) L2a|LINE|L2 106974 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 770-15 chr13 60579041 60579412 + 3 NA Intergenic L1ME1|LINE|L1 -93729 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 1018-12 chr16 34223555 34224142 + 3 NA Intergenic ALR/Alpha|Satellite|centr 60270 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 940-33 chr7 30758834 30759505 + 3 NA intron (NR_037598, intron 2 of 19) intron (NR_037598, intron 2 of 19) 7034 NM_001199219 11185 Hs.632629 NM_006774 ENSG00000241644 INMT TEMT indolethylamine N-methyltransferase protein-coding 667-38 chr17 54073650 54074013 + 3 NA Intergenic Intergenic 250904 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 567-121 chr3 118062107 118062306 + 3 NA Intergenic L1MC2|LINE|L1 -371281 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 630-9 chr10 88595046 88595476 + 3 NA intron (NM_001010939, intron 6 of 10) intron (NM_001010939, intron 6 of 10) 8499 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 1070-11 chr2 11976738 11977363 + 3 NA Intergenic MIRb|SINE|MIR -30066 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 421-278 chr7 35562432 35562617 + 3 NA Intergenic Intergenic 132611 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 899-37 chr9 127708721 127709276 + 3 NA intron (NR_145961, intron 1 of 8) MIR|SINE|MIR 2010 NM_001012502 286207 Hs.652519 NM_001012502 ENSG00000160401 CFAP157 C9orf117 cilia and flagella associated protein 157 protein-coding 405-282 chr6 97640273 97640455 + 3 NA intron (NR_110757, intron 3 of 4) intron (NR_110757, intron 3 of 4) 334778 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 464-72 chr15 27359637 27359886 + 3 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -198442 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 456-162 chr2 116846784 116847081 + 3 NA Intergenic L1ME3|LINE|L1 -967759 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 516-233 chr7 62925445 62925713 + 3 NA Intergenic ALR/Alpha|Satellite|centr 378477 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 506-282 chr8 83468381 83468626 + 3 NA Intergenic Intergenic 64745 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 361-280 chr3 48065202 48065402 + 3 NA intron (NM_002375, intron 1 of 18) MER5A1|DNA|hAT-Charlie 23546 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 580-209 chrX 65246204 65246502 + 3 NA Intergenic L1PA13|LINE|L1 -211612 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 559-124 chr3 104163792 104164142 + 3 NA Intergenic Intergenic -639851 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 323-367 chr4 56302929 56303042 + 3 NA intron (NM_020722, intron 4 of 10) intron (NM_020722, intron 4 of 10) 84506 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 475-151 chr2 172237112 172237402 + 3 NA Intergenic L1ME1|LINE|L1 134251 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 470-88 chr16 13515394 13515666 + 3 NA Intergenic MIRb|SINE|MIR -404627 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 855-26 chr2 67384285 67384731 + 3 NA Intergenic MER63C|DNA|hAT-Blackjack -12825 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 724-62 chr5 2834368 2834801 + 3 NA Intergenic MER5C1|DNA|hAT-Charlie 82453 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 530-125 chr2 60264790 60265056 + 3 NA Intergenic Intergenic 118113 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 531-110 chr2 59522487 59522743 + 3 NA Intergenic Intergenic 304907 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 534-28 chr10 41807704 41807951 + 3 NA Intergenic ALR/Alpha|Satellite|centr 560218 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 600-18 chr11 27291652 27291963 + 3 NA Intergenic Intergenic 71408 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 606-130 chr5 46367795 46368187 + 3 NA Intergenic ALR/Alpha|Satellite|centr -671611 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 500-180 chr3 38749315 38749491 + 3 NA intron (NM_006514, intron 12 of 26) intron (NM_006514, intron 12 of 26) 44607 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 430-25 chr10 33829413 33829585 + 3 NA Intergenic Intergenic -56819 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 760-2 chr1 69730038 69730497 + 3 NA intron (NM_001366839, intron 3 of 25) THE1C-int|LTR|ERVL-MaLR 160926 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 513-109 chr18 11107626 11107954 + 3 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 40972 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 965-2 chr1 178195604 178196019 + 3 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 101707 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 921-20 chr5 178965492 178966056 + 3 NA exon (NM_182594, exon 5 of 5) exon (NM_182594, exon 5 of 5) 24576 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 871-7 chr14 49215852 49216415 + 3 NA Intergenic Intergenic 370247 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 400-120 chr16 63999509 63999677 + 3 NA Intergenic L1M4b|LINE|L1 1122470 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 455-169 chr3 104493606 104493913 + 3 NA Intergenic FLAM_C|SINE|Alu -872954 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 276-274 chr22 26766648 26766768 + 3 NA intron (NR_110543, intron 2 of 5) MLT1I|LTR|ERVL-MaLR -93503 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 471-230 chr6 76177821 76178053 + 3 NA Intergenic L1PA16|LINE|L1 -105259 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 545-183 chr5 58229635 58229838 + 3 NA Intergenic Intergenic -107395 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 1544-2 chr5 141253978 141254844 + 3 NA Intergenic Intergenic 9016 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 839-34 chr3 118720068 118720515 + 3 NA intron (NR_135547, intron 1 of 3) L1MD1|LINE|L1 78523 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 420-93 chr16 61397156 61397394 + 3 NA Intergenic AluY|SINE|Alu -341509 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 723-24 chr17 53415847 53416204 + 3 NA Intergenic Intergenic -406902 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 761-24 chr2 122294699 122295017 + 3 NA Intergenic Intergenic 539207 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 981-19 chr21 32005560 32005994 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 80518 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 502-239 chr7 805538 805747 + 3 NA Intergenic Intergenic -9915 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 531-82 chr16 83024714 83024964 + 3 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) -34541 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 502-24 chr1 239453312 239453583 + 3 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 66879 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 567-63 chr16 8680873 8681296 + 3 NA intron (NM_020686, intron 1 of 15) AluJo|SINE|Alu 6467 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 555-103 chr2 132464674 132465037 + 3 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 31144 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 453-227 chr6 64910481 64910644 + 3 NA intron (NM_001292009, intron 16 of 43) intron (NM_001292009, intron 16 of 43) -390856 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 602-89 chr3 108383774 108384008 + 3 NA intron (NM_014981, intron 40 of 41) intron (NM_014981, intron 40 of 41) 72106 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 518-73 chr13 55933407 55933612 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 759055 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 419-78 chr12 115295551 115295818 + 3 NA Intergenic MIRb|SINE|MIR -611509 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 516-23 chr10 64129868 64130092 + 3 NA Intergenic LTR81C|LTR|Gypsy -608090 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 846-45 chr5 172747668 172748105 + 3 NA Intergenic L1MC5|LINE|L1 -7617 NR_161233 101928093 Hs.646902 NR_161233 LOC101928093 - uncharacterized LOC101928093 ncRNA 655-86 chr4 57933936 57934270 + 3 NA Intergenic Intergenic 508231 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 360-102 chr12 131186218 131186383 + 3 NA intron (NR_026670, intron 1 of 4) L1MA6|LINE|L1 21289 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 639-52 chr17 60702000 60702288 + 3 NA intron (NM_001330413, intron 4 of 25) Tigger2|DNA|TcMar-Tigger 24293 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 262-412 chr7 146488327 146488495 + 3 NA Intergenic Intergenic -285860 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 448-221 chr5 117812497 117812682 + 3 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 82228 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 492-89 chr14 62436454 62436696 + 3 NA Intergenic L1MEc|LINE|L1 -296602 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 328-220 chr18 7487532 7487677 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -26598 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 282-486 chr9 78481039 78481213 + 3 NA Intergenic L1MCb|LINE|L1 184001 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 500-178 chr3 30078131 30078356 + 3 NA Intergenic LTR16C|LTR|ERVL -144087 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 646-48 chr18 5166443 5166897 + 3 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 30587 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 257-288 chr4 21133532 21133715 + 3 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -149614 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 279-2 chr1 7319642 7319879 + 3 NA intron (NM_001349608, intron 4 of 21) L2a|LINE|L2 69994 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 510-145 chr2 66097956 66098187 + 3 NA Intergenic Intergenic 260257 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 510-219 chr5 24600391 24600707 + 3 NA intron (NM_001362460, intron 1 of 9) L2c|LINE|L2 44429 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 733-47 chr3 2677185 2677511 + 3 NA intron (NM_175607, intron 4 of 24) AluYj4|SINE|Alu -214867 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 689-81 chr5 89004014 89004366 + 3 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -100085 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 389-116 chr15 92493914 92494127 + 3 NA intron (NR_161371, intron 2 of 2) intron (NR_161371, intron 2 of 2) 22343 NR_161371 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 370-431 chr8 34006552 34006686 + 3 NA Intergenic Intergenic -406513 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 498-249 chr7 57917494 57917747 + 3 NA Intergenic ALR/Alpha|Satellite|centr 467443 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 354-288 chr3 28780787 28781060 + 3 NA Intergenic Intergenic 205645 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 484-179 chr3 109620832 109621088 + 3 NA Intergenic Intergenic 18132 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 403-187 chr22 28288262 28288519 + 3 NA intron (NM_001145418, intron 5 of 22) L1M5|LINE|L1 -171479 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 1089-12 chr4 175697530 175697989 + 3 NA intron (NM_201592, intron 2 of 6) intron (NM_201592, intron 2 of 6) 89917 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 752-35 chr19 37530712 37531089 + 3 NA intron (NM_001013659, intron 5 of 7) L1MEf|LINE|L1 -18049 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 152-51 chr2 112033990 112034059 + 3 NA Intergenic Intergenic -21245 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 753-37 chr2 204400441 204401066 + 3 NA Intergenic L1ME3|LINE|L1 -144722 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 507-282 chrX 45965112 45965380 + 3 NA Intergenic L1M4c|LINE|L1 -113756 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 919-11 chr2 116561870 116562366 + 3 NA Intergenic L2a|LINE|L2 1218303 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 301-238 chr2 198012754 198012922 + 3 NA intron (NM_006226, intron 1 of 5) MER57E2|LTR|ERV1 208245 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 327-323 chr3 34282262 34282478 + 3 NA Intergenic Intergenic 483740 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 340-129 chr13 51565979 51566200 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie 13500 NR_039852 100616423 NR_039852 ENSG00000266611 MIR4703 - microRNA 4703 ncRNA 324-491 chr7 50237027 50237168 + 3 NA Intergenic Intergenic -66967 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 416-293 chr6 63378357 63378580 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -58485 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 446-19 chr1 176525988 176526219 + 3 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 62928 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 489-178 chr3 131105761 131106028 + 3 NA intron (NM_001353034, intron 5 of 18) MER101-int|LTR|ERV1 78166 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 781-22 chr16 9709252 9709618 + 3 NA Intergenic Intergenic -253930 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 423-134 chr2 82382232 82382453 + 3 NA Intergenic Intergenic -474461 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 486-141 chr2 80494217 80494512 + 3 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 180985 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 443-223 chr4 70407316 70407603 + 3 NA intron (NM_001302807, intron 3 of 3) intron (NM_001302807, intron 3 of 3) 9519 NM_001302807 58503 Hs.661425 NM_021225 ENSG00000171199 OPRPN BPLP|PRL1|PROL1|opiorphin opiorphin prepropeptide protein-coding 412-307 chr7 45470859 45471085 + 3 NA Intergenic MLT2C1|LTR|ERVL -103168 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 753-46 chr4 181582709 181583078 + 3 NA Intergenic Intergenic 247080 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 429-280 chr7 86148226 86148404 + 3 NA Intergenic L1MC2|LINE|L1 -495594 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 519-231 chr8 72385271 72385473 + 3 NA Intergenic L1ME4a|LINE|L1 -133738 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 474-105 chr16 72985416 72985716 + 3 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 62562 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 525-106 chr2 6245431 6245822 + 3 NA Intergenic L1M7|LINE|L1 129796 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 688-64 chr2 66686830 66687283 + 3 NA intron (NR_110156, intron 4 of 5) intron (NR_110156, intron 4 of 5) 16171 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 254-80 chr12 41474846 41474978 + 3 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 37173 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 370-7 chr1 78251851 78252075 + 3 NA intron (NR_027310, intron 3 of 5) intron (NR_027310, intron 3 of 5) 22364 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 800-13 chr10 115995459 115996000 + 3 NA Intergenic Charlie15b|DNA|hAT-Charlie 199060 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 893-42 chr8 74283405 74283911 + 3 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 37703 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 728-38 chr16 72269696 72270036 + 3 NA Intergenic Intergenic -97416 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 544-11 chr1 91109770 91110007 + 3 NA Intergenic Charlie18a|DNA|hAT-Charlie -87633 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 168-40 chr16 56399760 56399845 + 3 NA intron (NM_001144, intron 8 of 13) L1MB5|LINE|L1 25187 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 381-345 chr6 162236181 162236397 + 3 NA intron (NM_004562, intron 3 of 11) MER92B|LTR|ERV1 -490843 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 408-211 chr3 89091100 89091355 + 3 NA Intergenic Intergenic -16394 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 536-74 chr14 75423641 75423940 + 3 NA Intergenic Intergenic -3934 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 502-227 chr5 113838867 113839130 + 3 NA Intergenic L1MA7|LINE|L1 325304 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 308-210 chr19 48039321 48039486 + 3 NA intron (NM_019855, intron 3 of 5) intron (NM_019855, intron 3 of 5) 4676 NM_019855 56344 Hs.117694 NM_016367 ENSG00000105507 CABP5 CABP3 calcium binding protein 5 protein-coding 769-26 chr2 27877625 27878013 + 3 NA intron (NM_001287580, intron 1 of 8) intron (NM_001287580, intron 1 of 8) -10890 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 670-8 chr1 194203284 194203545 + 3 NA Intergenic Intergenic 898669 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 390-64 chr11 98991337 98991509 + 3 NA Intergenic L1MA4A|LINE|L1 -29526 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 712-61 chr3 111005059 111005340 + 3 NA Intergenic Intergenic 64760 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 267-400 chr7 68608150 68608246 + 3 NA Intergenic L2|LINE|L2 587945 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 898-3 chr1 208976840 208977395 + 3 NA Intergenic Intergenic 4663 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 555-73 chr18 67947070 67947380 + 3 NA Intergenic Intergenic -132403 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 913-42 chr8 135281763 135282386 + 3 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 47943 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 688-63 chr2 62598922 62599361 + 3 NA Intergenic L1MD|LINE|L1 -74737 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 527-235 chr6 159162630 159162869 + 3 NA Intergenic Intergenic -6651 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 218-357 chr9 111222492 111222582 + 3 NA Intergenic Intergenic 48677 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 588-16 chr10 131079626 131079848 + 3 NA Intergenic Intergenic -15481 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 429-204 chr3 182298140 182298314 + 3 NA Intergenic Intergenic 188135 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 409-290 chr8 46679117 46679342 + 3 NA Intergenic L1PB2|LINE|L1 -61586 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 695-59 chr20 59655938 59656404 + 3 NA intron (NM_001281507, intron 1 of 12) L1M4b|LINE|L1 -20490 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 564-146 chr4 155623841 155624065 + 3 NA Intergenic L2|LINE|L2 -42757 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 597-132 chr8 91665171 91665518 + 3 NA Intergenic AluJo|SINE|Alu 352336 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 633-81 chr3 118168392 118168758 + 3 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -473193 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 543-116 chr2 34538045 34538269 + 3 NA Intergenic L1M2|LINE|L1 -139400 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 383-244 chr3 35568780 35568982 + 3 NA Intergenic Intergenic -70644 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 543-39 chr10 67067413 67067719 + 3 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 55300 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 387-55 chr11 26845894 26846062 + 3 NA Intergenic MER53|DNA|hAT -123918 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 748-26 chr12 12239079 12239594 + 3 NA intron (NM_002336, intron 2 of 22).2 intron (NM_002336, intron 2 of 22).2 27708 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 755-10 chr10 21933697 21934155 + 3 NA intron (NM_022365, intron 1 of 11) Tigger3b|DNA|TcMar-Tigger 69804 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 215-6 chr1 82723405 82723557 + 3 NA Intergenic Intergenic -179702 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 359-242 chr2 122758503 122758668 + 3 NA Intergenic Intergenic 314896 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 457-235 chr7 64827859 64828114 + 3 NA intron (NR_073391, intron 4 of 4) intron (NR_073391, intron 4 of 4) 33558 NM_006524 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 937 chr10 50509474 50510005 + 3 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 114217 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 335-156 chr14 45462362 45462527 + 3 NA Intergenic Intergenic -209242 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 344-12 chr1 78791483 78791668 + 3 NA Intergenic L1PA17|LINE|L1 141744 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 515-28 chr10 109185724 109186018 + 3 NA Intergenic L1MA5A|LINE|L1 737375 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 659-54 chr2 81184761 81185147 + 3 NA Intergenic Intergenic 281992 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 380-5 chr1 43494726 43494887 + 3 NA Intergenic L1ME4a|LINE|L1 -31231 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 501-8 chr1 104821839 104822091 + 3 NA Intergenic L1MB1|LINE|L1 748942 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 650-46 chr2 5493321 5493762 + 3 NA Intergenic Intergenic 197577 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 308-301 chr3 94911751 94911945 + 3 NA Intergenic Intergenic -26415 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 605-49 chr2 44155062 44155304 + 3 NA Intergenic Intergenic -13620 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 509-78 chr15 64022722 64022999 + 3 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 23625 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 406-140 chr2 48095573 48095763 + 3 NA Intergenic L1MCc|LINE|L1 -189875 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 427-16 chr1 247159321 247159511 + 3 NA intron (NM_003431, intron 2 of 3) MSTA1|LTR|ERVL-MaLR 12601 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 570-71 chr15 85450620 85450849 + 3 NA intron (NM_007200, intron 1 of 36) L1PA14|LINE|L1 70131 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 459-149 chr2 133024352 133024568 + 3 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 108903 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 539-129 chr2 167237892 167238232 + 3 NA intron (NM_001199144, intron 3 of 8) intron (NM_001199144, intron 3 of 8) 50690 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 375-388 chr7 104826129 104826298 + 3 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -22121 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 983-15 chr5 5980676 5981171 + 3 NA Intergenic Intergenic 356369 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 369-267 chr3 84454598 84454770 + 3 NA Intergenic (AATTCT)n|Simple_repeat|Simple_repeat 414891 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 799-8 chr10 129751169 129751534 + 3 NA intron (NM_002412, intron 3 of 4) L1MEf|LINE|L1 92023 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 614-47 chr19 44218055 44218336 + 3 NA intron (NM_001289167, intron 3 of 5) intron (NM_001289167, intron 3 of 5) 5663 NM_182490 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 278-341 chr5 77332194 77332317 + 3 NA intron (NM_001029851, intron 5 of 18) intron (NM_001029851, intron 5 of 18) 121575 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 577-27 chr10 44456894 44457309 + 3 NA Intergenic L1MC3|LINE|L1 -72004 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 399-193 chr22 16817899 16818067 + 3 NA intron (NM_001318251, intron 1 of 3) intron (NM_001318251, intron 1 of 3) 3716 NM_175878 150165 Hs.356069 NM_175878 ENSG00000172967 XKR3 XRG3|XTES XK related 3 protein-coding 372-58 chr10 108515707 108515877 + 3 NA Intergenic L1MB5|LINE|L1 -446499 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 471-203 chr4 172772780 172773043 + 3 NA intron (NM_001034845, intron 5 of 12) MLT1D|LTR|ERVL-MaLR -46033 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 397-203 chr3 30658643 30658832 + 3 NA intron (NM_001024847, intron 4 of 7) intron (NM_001024847, intron 4 of 7) 52136 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 502-250 chr8 2932418 2932619 + 3 NA Intergenic Intergenic -204067 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 340-437 chr5 35155152 35155322 + 3 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) -37115 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 473-264 chr7 159051847 159052046 + 3 NA intron (NR_130758, intron 5 of 12) L1ME3A|LINE|L1 43592 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 483-9 chr1 85721907 85722102 + 3 NA Intergenic L1MEg|LINE|L1 -13571 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 566 chr1 14457959 14458300 + 3 NA Intergenic L1ME5|LINE|L1 -38156 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 423-216 chr5 25634965 25635197 + 3 NA Intergenic L1PA15|LINE|L1 444128 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 464-9 chr1 180658776 180659057 + 3 NA intron (NR_137330, intron 1 of 12) L1MA3|LINE|L1 26894 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 203-208 chr6 131049498 131049578 + 3 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) 13707 NM_001431 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 410-197 chr3 99141668 99141895 + 3 NA Intergenic Intergenic -240086 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 361-14 chr1 111309312 111309539 + 3 NA intron (NM_021797, intron 1 of 8) intron (NM_021797, intron 1 of 8) 18574 NM_001040623 27159 Hs.128814 NM_021797 ENSG00000134216 CHIA AMCASE|CHIT2|TSA1902 chitinase acidic protein-coding 510-45 chr11 50612901 50613211 + 3 NA Intergenic ALR/Alpha|Satellite|centr 203909 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 547-123 chr20 60748756 60749087 + 3 NA Intergenic L2a|LINE|L2 184359 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 580-202 chr8 126708131 126708492 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -149833 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 315-185 chr17 13488332 13488556 + 3 NA Intergenic Intergenic 55202 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 738-27 chr16 75166532 75167006 + 3 NA intron (NM_001318471, intron 3 of 4) intron (NM_001318471, intron 3 of 4) 17718 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 626-114 chr5 53758113 53758414 + 3 NA Intergenic L1MC4|LINE|L1 61419 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 827-16 chr14 62189482 62190092 + 3 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -49814 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 489-19 chr1 221232711 221232981 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 103450 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 727-56 chr3 177655537 177656017 + 3 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -161088 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 567-165 chr7 12517468 12517820 + 3 NA intron (NR_136263, intron 1 of 3) L1MA4A|LINE|L1 13247 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 549-178 chr6 40766314 40766509 + 3 NA Intergenic L1PA13|LINE|L1 -179047 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 384-56 chr11 32606424 32606591 + 3 NA TTS (NM_001307929) TTS (NM_001307929) 22676 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 452-103 chr16 64202739 64203022 + 3 NA Intergenic L2a|LINE|L2 919183 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 611-20 chr11 31089081 31089506 + 3 NA intron (NM_001367979, intron 17 of 38) L1ME1|LINE|L1 -96607 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 304-107 chr12 37794919 37795064 + 3 NA Intergenic ALR/Alpha|Satellite|centr -521783 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 418-62 chr13 79176565 79176739 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 229569 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 565-40 chr13 109641376 109641700 + 3 NA Intergenic Intergenic -86736 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 384-40 chr10 70059606 70059835 + 3 NA intron (NM_018649, intron 1 of 8) intron (NM_018649, intron 1 of 8) 6874 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 619-37 chr12 119515715 119516135 + 3 NA intron (NM_178499, intron 7 of 13) intron (NM_178499, intron 7 of 13) -77849 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 988-36 chr8 33263087 33263494 + 3 NA Intergenic Intergenic 209856 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 353-509 chr8 37707419 37707647 + 3 NA Intergenic AluSx|SINE|Alu -10046 NR_125820 101929622 Hs.127775 NR_125820 LOC101929622 - uncharacterized LOC101929622 ncRNA 421-279 chr7 35799679 35799877 + 3 NA intron (NR_120512, intron 1 of 4) L1ME3Cz|LINE|L1 847 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 532-111 chr2 6737861 6738100 + 3 NA intron (NR_038369, intron 1 of 5) intron (NR_038369, intron 1 of 5) 32331 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 295-31 chr1 224838789 224838958 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -90781 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 611-13 chr10 41773733 41774181 + 3 NA Intergenic ALR/Alpha|Satellite|centr 594088 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 989-10 chr19 58093414 58094065 + 3 NA intron (NM_001145542, intron 1 of 6) intron (NM_001145542, intron 1 of 6) 4492 NM_001145544 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 853-34 chr6 120021914 120022430 + 3 NA Intergenic L1MA8|LINE|L1 6993 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 911-24 chr6 166054104 166054617 + 3 NA Intergenic L1ME1|LINE|L1 -43360 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 426-287 chr8 46869399 46869587 + 3 NA Intergenic L1PA13|LINE|L1 28607 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 350-574 chrX 96466215 96466477 + 3 NA Intergenic Intergenic -128444 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 566-108 chr20 40788436 40788708 + 3 NA Intergenic Intergenic -73949 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 250-35 chr10 19225762 19225919 + 3 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 177039 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 433-205 chr4 80980596 80980787 + 3 NA Intergenic L2c|LINE|L2 -50017 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 252-261 chr3 57843146 57843238 + 3 NA intron (NM_001304420, intron 3 of 21) intron (NM_001304420, intron 3 of 21) -46722 NM_001311179 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 424-72 chr14 66883992 66884198 + 3 NA intron (NM_001024218, intron 5 of 21) L1MEf|LINE|L1 -305345 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 868-38 chr7 56162267 56162890 + 3 NA Intergenic LTR1A1|LTR|ERV1 -46161 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 531-141 chr21 21561038 21561424 + 3 NA Intergenic LTR47B2|LTR|ERVL 176088 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 535-246 chr8 122905591 122905793 + 3 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 120080 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 404-332 chr8 128492791 128492968 + 3 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 71800 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 483-245 chr7 51869466 51869699 + 3 NA Intergenic L2b|LINE|L2 -476326 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 470-282 chr8 136044804 136045050 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger -485871 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 487-45 chr10 83252540 83252736 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR 424451 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 405-300 chr7 41850720 41850899 + 3 NA Intergenic LTR16|LTR|ERVL -147719 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 281-220 chr2 117242553 117242754 + 3 NA Intergenic Intergenic -572038 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 422-58 chr12 38024149 38024421 + 3 NA Intergenic ALR/Alpha|Satellite|centr -292489 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 820-21 chr17 62983992 62984353 + 3 NA intron (NM_025185, intron 1 of 25) L1M2c|LINE|L1 17937 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 408-138 chr17 48531950 48532171 + 3 NA Intergenic Intergenic -1049 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 338-165 chr14 62240913 62241087 + 3 NA Intergenic Intergenic -101027 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 318-33 chr1 181869209 181869378 + 3 NA Intergenic L1MEc|LINE|L1 192419 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 370-457 chr8 134437841 134438052 + 3 NA Intergenic MER63C|DNA|hAT-Blackjack -160125 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 320-470 chr5 161218741 161218864 + 3 NA Intergenic Intergenic -280176 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 457-248 chr8 4070857 4071085 + 3 NA intron (NM_033225, intron 3 of 69) L1MEf|LINE|L1 923943 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 555-214 chr8 141981634 141981909 + 3 NA Intergenic L2c|LINE|L2 -194568 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 543-267 chrX 14667264 14667639 + 3 NA intron (NM_002063, intron 7 of 8) MER58A|DNA|hAT-Charlie 137915 NM_001118886 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 274-45 chr10 57961507 57961642 + 3 NA Intergenic Intergenic 306320 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 292-315 chr4 59811100 59811262 + 3 NA Intergenic Intergenic 797608 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 432-253 chr6 120710477 120710721 + 3 NA Intergenic Intergenic 623881 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 911-28 chr7 63157133 63157594 + 3 NA Intergenic AluJb|SINE|Alu 146693 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 480-81 chr14 71793676 71793964 + 3 NA Intergenic L1MB8|LINE|L1 -138351 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 404-156 chr2 29464980 29465141 + 3 NA intron (NM_004304, intron 4 of 28) L1MEf|LINE|L1 10317 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 686 chr1 50660555 50660868 + 3 NA intron (NM_007051, intron 7 of 18) AluSg|SINE|Alu -237268 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 839-43 chr5 156633617 156634139 + 3 NA intron (NM_001128209, intron 5 of 7) MamGypLTR1b|LTR|Gypsy -216417 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 388-68 chr11 81084641 81084820 + 3 NA Intergenic L1PA16|LINE|L1 -321927 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 460-5 chr1 104606177 104606445 + 3 NA Intergenic L1MA9|LINE|L1 533288 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 495-92 chr18 41257858 41258232 + 3 NA Intergenic Intergenic 262632 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 441-285 chrX 65046184 65046390 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -11546 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 479-17 chr10 17339948 17340180 + 3 NA intron (NM_001004470, intron 4 of 7) MIRb|SINE|MIR -46872 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 632-35 chr16 7778439 7778815 + 3 NA Intergenic Intergenic 445782 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 550-42 chr10 123728348 123728704 + 3 NA Intergenic Intergenic 62171 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 401-5 chr1 56990722 56990884 + 3 NA Intergenic L2a|LINE|L2 -24663 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 278-194 chr19 43891459 43891652 + 3 NA TTS (NR_038334) TTS (NR_038334) 10248 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 890-34 chr7 91749877 91750398 + 3 NA Intergenic L1M2|LINE|L1 130565 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 596-6 chr1 104003086 104003485 + 3 NA Intergenic Intergenic -69738 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 537-230 chr7 24090743 24091000 + 3 NA Intergenic Intergenic -193319 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 565-27 chr11 80811591 80811906 + 3 NA Intergenic Intergenic -48945 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 1060-12 chr2 171966767 171967183 + 3 NA intron (NR_027862, intron 7 of 9) intron (NR_027862, intron 7 of 9) -32978 NR_136273 254042 Hs.298250 NM_199227 ENSG00000172878 METAP1D MAP 1D|MAP1D|MetAP 1D|Metap1l methionyl aminopeptidase type 1D, mitochondrial protein-coding 467-5 chr1 53488856 53489077 + 3 NA Intergenic HAL1|LINE|L1 29567 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 606-43 chr12 126452729 126453222 + 3 NA intron (NR_130748, intron 4 of 11) AluSc|SINE|Alu -3648 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 596-149 chr7 37380391 37380790 + 3 NA intron (NM_001206480, intron 1 of 21) Tigger17a|DNA|TcMar-Tigger -26922 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 464-228 chr7 3340829 3341037 + 3 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 39681 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 626-24 chr11 55631765 55632197 + 3 NA Intergenic L1MEc|LINE|L1 -6377 NM_001004124 81300 NM_001004124 ENSG00000181927 OR4P4 OR4P3P olfactory receptor family 4 subfamily P member 4 protein-coding 475-293 chr9 9690976 9691234 + 3 NA intron (NM_002839, intron 7 of 45) L1MA2|LINE|L1 -108287 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 747-16 chr13 50097719 50098181 + 3 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 15781 NR_109974 10301 Hs.591229 NM_005887 ENSG00000176124 DLEU1 BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 deleted in lymphocytic leukemia 1 ncRNA 348-336 chr3 192790175 192790356 + 3 NA Intergenic Intergenic -62724 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 480-246 chr6 3102839 3103020 + 3 NA intron (NM_001354930, intron 7 of 10) L1MB4|LINE|L1 -15447 NR_026649 670 Hs.10136 NM_004332 ENSG00000137274 BPHL BPH-RP|MCNAA|VACVASE biphenyl hydrolase like protein-coding 360-473 chr8 121323494 121323654 + 3 NA Intergenic Intergenic -315772 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 1086-5 chr1 152238856 152239301 + 3 NA Intergenic L1P1|LINE|L1 -14882 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 1205-10 chr7 92939949 92940462 + 3 NA Intergenic Intergenic -103578 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 539-175 chr5 178920697 178920970 + 3 NA intron (NM_030613, intron 4 of 4) L1MD2|LINE|L1 -20365 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 505-18 chr1 177532601 177532783 + 3 NA Intergenic L1PA15|LINE|L1 -167832 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 712-59 chr3 71742281 71742637 + 3 NA intron (NM_173359, intron 1 of 7) L1MEc|LINE|L1 11132 NM_001282886 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 491-270 chr8 139751535 139751776 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -48532 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 530-152 chr20 59256082 59256292 + 3 NA 3' UTR (NM_178457, exon 5 of 5) 3' UTR (NM_178457, exon 5 of 5) -44424 NM_001302456 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 849-31 chr4 85186080 85186579 + 3 NA Intergenic L1M1|LINE|L1 218845 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 700-59 chr22 43647460 43647905 + 3 NA intron (NM_198856, intron 15 of 29) MLT1C|LTR|ERVL-MaLR 131428 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 391-15 chr1 163566916 163567172 + 3 NA Intergenic L1M5|LINE|L1 -143853 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 729-83 chr9 80205875 80206259 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 231044 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 557-116 chr2 186545440 186545674 + 3 NA Intergenic Intergenic -44499 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 688-72 chr22 34889279 34889731 + 3 NA intron (NR_138042, intron 3 of 4) THE1D-int|LTR|ERVL-MaLR 108411 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 181-103 chr4 47109807 47109902 + 3 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 78287 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 304-409 chr5 27388540 27388737 + 3 NA Intergenic Intergenic -83654 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 197-176 chr5 127862640 127862763 + 3 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 159312 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 407-37 chr10 91657388 91657597 + 3 NA Intergenic L1ME3F|LINE|L1 -24421 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 443-19 chr1 116507578 116507820 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger -28873 NR_125973 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 504-66 chr14 38571648 38571925 + 3 NA Intergenic L1M4|LINE|L1 -310810 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 425-250 chr5 169799038 169799301 + 3 NA intron (NR_156756, intron 25 of 52) intron (NR_156756, intron 25 of 52) 161894 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 575-59 chr15 59957398 59957664 + 3 NA Intergenic Intergenic -46780 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 721-17 chr14 86751390 86751887 + 3 NA Intergenic L1MA3|LINE|L1 -154140 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 176-82 chr3 26712485 26712581 + 3 NA Intergenic Intergenic 17976 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 654-77 chr22 43244104 43244430 + 3 NA intron (NM_173050, intron 6 of 21) intron (NM_173050, intron 6 of 21) 31593 NR_134632 105373051 Hs.629290 NR_134632 ENSG00000236272 LOC105373051 - uncharacterized LOC105373051 ncRNA 1090-12 chr8 103543003 103543586 + 3 NA intron (NM_001348497, intron 1 of 22) L1MA8|LINE|L1 -41384 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 639-34 chr13 93237712 93238151 + 3 NA intron (NM_005708, intron 1 of 8) L1PB3|LINE|L1 11124 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 752-25 chr16 71186988 71187405 + 3 NA intron (NM_001198543, intron 1 of 18) intron (NM_001198543, intron 1 of 18) 43526 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 408-22 chr1 165172680 165172859 + 3 NA Intergenic Intergenic 183472 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 685-9 chr10 66894685 66894996 + 3 NA intron (NR_111911, intron 6 of 6) intron (NR_111911, intron 6 of 6) -31196 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 544-113 chr2 57739999 57740273 + 3 NA Intergenic Intergenic -167515 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 485-241 chr6 28187420 28187727 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 25812 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 1004-10 chr2 65657169 65657768 + 3 NA Intergenic MIRb|SINE|MIR -224869 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 462-116 chr18 61926012 61926235 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -33116 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 550-199 chr6 62109609 62110019 + 3 NA intron (NR_146874, intron 2 of 13) GA-rich|Low_complexity|Low_complexity 176411 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 191-111 chr2 166735581 166735712 + 3 NA Intergenic Intergenic -152841 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 514-82 chr14 42984407 42984638 + 3 NA Intergenic Intergenic 1377666 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 768-15 chr12 106559602 106560171 + 3 NA intron (NR_040246, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger -23021 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 264-195 chr2 36023097 36023221 + 3 NA Intergenic L1MEg|LINE|L1 332411 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 538-9 chr1 95557348 95557547 + 3 NA Intergenic MER11A|LTR|ERVK 47331 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 341-128 chr12 108053380 108053603 + 3 NA Intergenic Intergenic -75797 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 599-33 chr12 125937838 125938128 + 3 NA Intergenic L1MD2|LINE|L1 45391 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 504-71 chr14 62227072 62227394 + 3 NA Intergenic L1ME1|LINE|L1 -87260 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 825-53 chr8 99327564 99327964 + 3 NA intron (NM_017890, intron 19 of 61) LTR102_Mam|LTR|ERVL 208966 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 770-9 chr11 102512047 102512525 + 3 NA Intergenic AluSx1|SINE|Alu 18461 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 370-236 chr2 80580190 80580343 + 3 NA intron (NM_001282599, intron 7 of 11) MIR|SINE|MIR 266887 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 455-223 chr5 63850544 63850740 + 3 NA Intergenic Intergenic 111650 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 544-234 chr9 1897488 1897689 + 3 NA Intergenic Intergenic -117759 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 1320-4 chr12 37935408 37936264 + 3 NA Intergenic ALR/Alpha|Satellite|centr -380938 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 474-48 chr11 73516906 73517094 + 3 NA intron (NM_001286051, intron 1 of 5) L2b|LINE|L2 81112 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 412-330 chr8 108518367 108518556 + 3 NA Intergenic L1MA10|LINE|L1 74837 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 559-10 chr10 8383917 8384108 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -115707 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 336-557 chr8 128436284 128436505 + 3 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 128285 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 409-198 chr3 88241787 88241944 + 3 NA Intergenic Intergenic 91906 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 414-5 chr1 61162955 61163233 + 3 NA intron (NM_001134673, intron 2 of 10) intron (NM_001134673, intron 2 of 10) 80533 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 575-88 chr2 102936938 102937320 + 3 NA Intergenic Intergenic -41407 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 520-328 chr9 104166747 104167088 + 3 NA Intergenic Intergenic 72290 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 530-81 chr14 92248739 92249052 + 3 NA Intergenic L1ME1|LINE|L1 -73686 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 376-14 chr1 107072643 107072955 + 3 NA Intergenic Intergenic 16125 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 412-217 chr3 118262047 118262310 + 3 NA Intergenic HAL1ME|LINE|L1 -379590 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 396-238 chr3 186048364 186048544 + 3 NA 3' UTR (NM_004454, exon 13 of 13) 3' UTR (NM_004454, exon 13 of 13) 60635 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 555-186 chr7 62606338 62606701 + 3 NA Intergenic ALR/Alpha|Satellite|centr 697537 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 746-42 chr2 141914994 141915411 + 3 NA intron (NM_018557, intron 1 of 90) L1PA16|LINE|L1 216499 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 615-56 chr19 56652796 56653255 + 3 NA intron (NR_163263, intron 4 of 4) intron (NR_163263, intron 4 of 4) 9866 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 483-77 chr15 93444122 93444397 + 3 NA Intergenic L1MD3|LINE|L1 238193 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 668-53 chr2 124917249 124917545 + 3 NA 3' UTR (NM_001367498, exon 24 of 24) 3' UTR (NM_001367498, exon 24 of 24) 892110 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 421-118 chr19 9346956 9347174 + 3 NA intron (NM_001172650, intron 3 of 11) intron (NM_001172650, intron 3 of 11) -15948 NM_003451 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 454-347 chrUn_KI270438v1 769 934 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 541-249 chr8 137416020 137416206 + 3 NA Intergenic Intergenic -2525 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 609-123 chr7 8034315 8034659 + 3 NA intron (NM_138426, intron 3 of 7) L1ME1|LINE|L1 65691 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 825-52 chr8 89318145 89318479 + 3 NA Intergenic Intergenic 439399 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 270-82 chr12 38431640 38431810 + 3 NA Intergenic Intergenic 114951 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 447-21 chr10 29165369 29165655 + 3 NA Intergenic L1MEc|LINE|L1 -123558 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 627-74 chr3 106732054 106732463 + 3 NA Intergenic MIR3|SINE|MIR 508380 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 622-14 chr11 38226050 38226356 + 3 NA Intergenic HERVIP10B3-int|LTR|ERV1 287602 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 653-60 chr19 29301537 29301929 + 3 NA intron (NR_040029, intron 9 of 9) L1MEd|LINE|L1 -88582 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 494-16 chr1 196532448 196532756 + 3 NA intron (NM_001287820, intron 1 of 26) A-rich|Low_complexity|Low_complexity 49879 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 448-240 chr6 49423500 49423719 + 3 NA Intergenic Intergenic 39644 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 595-34 chr11 98087140 98087513 + 3 NA Intergenic Intergenic -933623 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 403-307 chr8 85070860 85071094 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -36261 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 473-193 chr4 54614182 54614447 + 3 NA Intergenic Intergenic -7183 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 386-339 chr8 13764797 13765023 + 3 NA Intergenic L1MA9|LINE|L1 135220 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 276-184 chr16 75554572 75554759 + 3 NA intron (NR_074083, intron 2 of 6) intron (NR_074083, intron 2 of 6) 1587 NR_074083 79583 Hs.156784 NM_001077416 ENSG00000205084 TMEM231 ALYE870|JBTS20|MKS11|PRO1886 transmembrane protein 231 protein-coding 703-49 chr2 134632943 134633359 + 3 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 85849 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 485-160 chr20 7270520 7270805 + 3 NA Intergenic Intergenic -16460 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 562-80 chr17 69890991 69891312 + 3 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -70556 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 454-316 chr8 112030432 112030599 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -612978 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 935-21 chr2 56842064 56842623 + 3 NA Intergenic L1MEd|LINE|L1 -656573 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 561-211 chr8 126994297 126994564 + 3 NA Intergenic Intergenic -18724 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 159-101 chr9 31110770 31110831 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie 270690 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 566-199 chr8 130746381 130746649 + 3 NA Intergenic LTR13A|LTR|ERVK 294394 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 312-148 chr14 59500061 59500191 + 3 NA intron (NM_001284204, intron 5 of 5) intron (NM_001284204, intron 5 of 5) 15609 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 576-178 chr9 8301276 8301513 + 3 NA Intergenic Intergenic 432552 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 522-262 chr8 134437258 134437603 + 3 NA Intergenic MIR|SINE|MIR -160641 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 710-12 chr10 39339452 39339853 + 3 NA Intergenic ALR/Alpha|Satellite|centr 643056 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 826-47 chr3 182108163 182108652 + 3 NA Intergenic Intergenic 156043 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 319-458 chr6 63281586 63281722 + 3 NA intron (NM_001143940, intron 3 of 4) intron (NM_001143940, intron 3 of 4) 38323 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 472-97 chr15 27661324 27661525 + 3 NA Intergenic Intergenic 437891 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 897-3 chr1 186543706 186544376 + 3 NA Intergenic L1M2|LINE|L1 -82927 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 415-172 chr3 25822067 25822385 + 3 NA Intergenic Intergenic 32136 NM_017897 54995 Hs.55781 NM_017897 ENSG00000151093 OXSM CEM1|FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 596-86 chr2 16295535 16295965 + 3 NA Intergenic L1MC3|LINE|L1 245323 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 647-7 chr1 191918534 191918847 + 3 NA Intergenic Intergenic -239772 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 997-5 chr11 21352792 21353342 + 3 NA intron (NM_201551, intron 14 of 18) LTR91|LTR|ERVL 683481 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 539-169 chr5 96237069 96237431 + 3 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 158112 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 274-114 chr13 112019653 112019788 + 3 NA intron (NR_120392, intron 1 of 3) L1MD2|LINE|L1 47410 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 534-30 chr10 56958401 56958588 + 3 NA Intergenic Intergenic 346065 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 467-125 chr19 43976029 43976228 + 3 NA Intergenic AluJo|SINE|Alu -8042 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 216-111 chr15 48034161 48034322 + 3 NA Intergenic Intergenic -86749 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 419-166 chr20 54610893 54611066 + 3 NA intron (NM_018431, intron 6 of 7) MER102b|DNA|hAT-Charlie 135386 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 716-30 chr17 57694730 57695168 + 3 NA Intergenic Intergenic 50350 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 574-49 chr16 51619971 51620293 + 3 NA Intergenic Intergenic -142387 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 511-214 chr5 130478011 130478311 + 3 NA Intergenic L1PB2|LINE|L1 573696 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 481-326 chrX 147278425 147278684 + 3 NA TTS (NR_030238) TTS (NR_030238) 790 NR_030238 574516 NR_030238 ENSG00000207868 MIR514A1 MIR514-1|MIRN514-1|hsa-mir-514a-1|mir-514a-1 microRNA 514a-1 ncRNA 381-267 chr4 37086902 37087076 + 3 NA Intergenic Intergenic 85210 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 981-16 chr20 17181615 17182160 + 3 NA Intergenic L1PA6|LINE|L1 -44220 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 884-2 chr10 65035838 65036366 + 3 NA Intergenic Intergenic -111584 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 574-157 chr6 155574173 155574519 + 3 NA Intergenic Intergenic 59502 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 328-262 chr2 58380731 58380874 + 3 NA Intergenic Intergenic 104925 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 221-8 chr1 84668889 84668994 + 3 NA intron (NM_001166417, intron 5 of 14) intron (NM_001166417, intron 5 of 14) 21520 NM_001166294 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 505-293 chr7 113735065 113735414 + 3 NA Intergenic L1MD1|LINE|L1 183770 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 638-70 chr2 103319996 103320392 + 3 NA Intergenic Intergenic -335765 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 511-200 chr5 1719847 1720021 + 3 NA Intergenic Intergenic -11066 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 493-40 chr11 24313285 24313575 + 3 NA Intergenic Intergenic -183623 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 621-134 chr8 121781067 121781380 + 3 NA Intergenic L2a|LINE|L2 -139783 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 261-26 chr1 208343406 208343574 + 3 NA Intergenic Intergenic -99106 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 372-520 chr9 106115104 106115309 + 3 NA Intergenic Intergenic 420665 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 672-62 chr2 165354059 165354448 + 3 NA exon (NM_001371247, exon 17 of 27) exon (NM_001371247, exon 17 of 27) 60198 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 404-228 chr4 46439773 46439928 + 3 NA Intergenic Intergenic -49722 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 265-227 chr22 33902053 33902182 + 3 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 18311 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 795-15 chr10 113258981 113259431 + 3 NA Intergenic L1ME4a|LINE|L1 129935 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 242-403 chr8 113888525 113888692 + 3 NA Intergenic Intergenic -451669 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 569-9 chr1 111351712 111352021 + 3 NA non-coding (NR_125338, exon 4 of 4) non-coding (NR_125338, exon 4 of 4) 5244 NM_181643 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 442-252 chr6 73461604 73461856 + 3 NA promoter-TSS (NM_012123) promoter-TSS (NM_012123) -7 NM_133645 25821 Hs.347614 NM_012123 ENSG00000135297 MTO1 CGI-02|COXPD10 mitochondrial tRNA translation optimization 1 protein-coding 191-44 chr13 29698629 29698755 + 3 NA Intergenic Intergenic 50999 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 668-39 chr17 66063952 66064247 + 3 NA intron (NM_001353129, intron 10 of 26) L2c|LINE|L2 127793 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 357-496 chrX 102025060 102025243 + 3 NA Intergenic L1M3c|LINE|L1 -93124 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 431-99 chr16 78391517 78391794 + 3 NA intron (NM_001291997, intron 5 of 7) AluSz6|SINE|Alu 292001 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 759-69 chr8 49034648 49035132 + 3 NA Intergenic L1P4|LINE|L1 -19446 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 296-473 chr8 103316577 103316699 + 3 NA intron (NM_001317796, intron 2 of 5) HAL1|LINE|L1 7660 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 556-22 chr10 63036598 63036989 + 3 NA Intergenic AluSz|SINE|Alu -96454 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 385-288 chr5 9670304 9670520 + 3 NA intron (NR_027112, intron 9 of 12) MER57B1|LTR|ERV1 -40061 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 434-80 chr14 49252154 49252391 + 3 NA Intergenic L1PA15|LINE|L1 334108 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 575-95 chr2 196006419 196006811 + 3 NA intron (NM_018897, intron 10 of 64) L1MB7|LINE|L1 62222 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 430-262 chr6 69574485 69574672 + 3 NA Intergenic MIR|SINE|MIR 221888 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 530-164 chr3 70075407 70075734 + 3 NA Intergenic Intergenic 75826 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 770-37 chr2 80476522 80477041 + 3 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 163402 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 649-79 chr4 27943759 27944063 + 3 NA Intergenic Intergenic 726432 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 693-72 chr4 2029727 2030075 + 3 NA Intergenic L1PA10|LINE|L1 -12092 NM_001168243 401115 Hs.446474 NM_001141936 ENSG00000243449 C4orf48 CHR4_55 chromosome 4 open reading frame 48 protein-coding 313-334 chr3 39301451 39301623 + 3 NA Intergenic L1MA2|LINE|L1 -19802 NM_001171174 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 806-37 chr21 30419165 30419780 + 3 NA Intergenic L1PA16|LINE|L1 6454 NM_181622 337960 Hs.553687 NM_181622 ENSG00000240432 KRTAP13-3 KAP13.3 keratin associated protein 13-3 protein-coding 493-184 chr20 54586296 54586480 + 3 NA intron (NM_018431, intron 2 of 7) intron (NM_018431, intron 2 of 7) 110795 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 351-347 chr4 58762001 58762178 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -222193 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1005-3 chr11 109439580 109440062 + 3 NA Intergenic Intergenic 17631 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 411-90 chr14 66268642 66268876 + 3 NA Intergenic Intergenic -217612 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 691-79 chr7 10171449 10171757 + 3 NA Intergenic Intergenic -531073 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 312-219 chr2 945023 945146 + 3 NA Intergenic MER41B|LTR|ERV1 -5765 NM_018968 54221 Hs.595069 NM_018968 ENSG00000172554 SNTG2 G2SYN|SYN5 syntrophin gamma 2 protein-coding 490-51 chr11 22202923 22203195 + 3 NA intron (NM_001142649, intron 1 of 21) L1M5|LINE|L1 9883 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 523-276 chr8 112610325 112610558 + 3 NA intron (NM_001363185, intron 20 of 66) MamRep1527|LTR|LTR -33052 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 592-66 chr18 4481652 4481954 + 3 NA Intergenic L3|LINE|CR1 -26496 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 574-100 chr21 14322492 14322861 + 3 NA Intergenic MIR3|SINE|MIR 48877 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 341-456 chr5 170402866 170403033 + 3 NA intron (NR_109899, intron 1 of 2) intron (NR_109899, intron 1 of 2) 13456 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 432-92 chr16 54392661 54392922 + 3 NA Intergenic Intergenic -22092 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 659-98 chr7 4254163 4254558 + 3 NA intron (NM_001079653, intron 18 of 19) L1MB7|LINE|L1 -119523 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 361-115 chr12 94219299 94219545 + 3 NA intron (NM_005761, intron 5 of 30) L1M5|LINE|L1 -43099 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 369-55 chr11 30877033 30877227 + 3 NA intron (NM_001367979, intron 38 of 38) intron (NM_001367979, intron 38 of 38) 115556 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 446-15 chr1 106973365 106973565 + 3 NA Intergenic Intergenic -83209 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 481-15 chr1 222218308 222218520 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -239894 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 403-281 chr7 36933347 36933544 + 3 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -14013 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 360-57 chr10 112027984 112028167 + 3 NA Intergenic Intergenic 155690 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 792-21 chr13 111895313 111895802 + 3 NA intron (NR_120401, intron 1 of 3) intron (NR_120401, intron 1 of 3) 2061 NR_120401 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 372-418 chr5 161787177 161787358 + 3 NA Intergenic Intergenic -59924 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 423-79 chr14 73124785 73124974 + 3 NA TTS (NM_021239) TTS (NM_021239) -11628 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 271-87 chr12 12604976 12605120 + 3 NA Intergenic Intergenic -6828 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 446-211 chr4 31181781 31182100 + 3 NA intron (NR_125935, intron 2 of 4) intron (NR_125935, intron 2 of 4) 10796 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 610-98 chr20 42026006 42026362 + 3 NA Intergenic L2a|LINE|L2 -407807 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 353-28 chr1 153373829 153374081 + 3 NA exon (NM_005621, exon 3 of 3) exon (NM_005621, exon 3 of 3) 1666 NM_005621 6283 Hs.19413 NM_005621 ENSG00000163221 S100A12 CAAF1|CAGC|CGRP|ENRAGE|MRP-6|MRP6|p6 S100 calcium binding protein A12 protein-coding 497-191 chr3 194755881 194756117 + 3 NA intron (NR_037891, intron 3 of 3) intron (NR_037891, intron 3 of 3) 12710 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 567-115 chr3 69578940 69579226 + 3 NA Intergenic Intergenic -160381 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 804-74 chr8 138701650 138702043 + 3 NA intron (NM_152888, intron 31 of 64) intron (NM_152888, intron 31 of 64) -204116 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 416-326 chr8 37448787 37449020 + 3 NA intron (NR_121620, intron 3 of 6) L1ME3D|LINE|L1 45010 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 1736 chr12 34568547 34569465 + 3 NA Intergenic ALR/Alpha|Satellite|centr 546510 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 315-445 chr7 63922836 63922966 + 3 NA Intergenic L1MC2|LINE|L1 -75905 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 535-166 chr3 64313772 64314036 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -45731 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 881-32 chr5 169233856 169234337 + 3 NA intron (NM_003062, intron 3 of 35) L1ME3B|LINE|L1 29598 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 349-58 chr10 54851243 54851526 + 3 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -50093 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 325-306 chr20 31262522 31262710 + 3 NA Intergenic L1MEg|LINE|L1 4952 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 514-175 chr22 34786868 34787210 + 3 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 210877 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 553-168 chr4 36301065 36301368 + 3 NA intron (NM_001170700, intron 5 of 9) intron (NM_001170700, intron 5 of 9) 19600 NM_001170700 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 740-28 chr15 94900001 94900418 + 3 NA Intergenic Intergenic 44846 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 739-33 chr2 27975011 27975334 + 3 NA intron (NM_199193, intron 4 of 13) L1ME1|LINE|L1 -21195 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 747-42 chr3 35069065 35069485 + 3 NA intron (NR_110817, intron 2 of 3) L2a|LINE|L2 324748 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 592-143 chr5 64136188 64136438 + 3 NA Intergenic L1ME1|LINE|L1 -29530 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 386-209 chr20 51295829 51296060 + 3 NA Intergenic Intergenic 157033 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 542-197 chr7 27222594 27222799 + 3 NA Intergenic L1MB8|LINE|L1 -20106 NM_001304519 2128 Hs.369879 NM_001989 ENSG00000106038 EVX1 EVX-1 even-skipped homeobox 1 protein-coding 537-80 chr16 52083272 52083606 + 3 NA non-coding (NR_038233, exon 3 of 3) non-coding (NR_038233, exon 3 of 3) 1670 NR_038233 100505619 Hs.535454 NR_038233 ENSG00000260268 LINC00919 - long intergenic non-protein coding RNA 919 ncRNA 623-76 chr21 19828787 19829198 + 3 NA Intergenic Intergenic 70763 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 496-311 chrX 77985291 77985528 + 3 NA intron (NR_104109, intron 2 of 9) intron (NR_104109, intron 2 of 9) -15771 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 549-151 chr4 63288764 63288976 + 3 NA Intergenic MER33|DNA|hAT-Charlie 1120580 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 448-166 chr3 106583776 106584006 + 3 NA Intergenic Intergenic 656747 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 511-42 chr12 18920098 18920304 + 3 NA Intergenic L1ME4b|LINE|L1 182082 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 482-41 chr10 96444183 96444400 + 3 NA intron (NM_012465, intron 3 of 20) L1ME4a|LINE|L1 69635 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 420-53 chr11 90897171 90897337 + 3 NA intron (NR_104190, intron 6 of 6) L2a|LINE|L2 -28052 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 1092-13 chr22 27643386 27643859 + 3 NA Intergenic L2a|LINE|L2 158134 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 382-341 chr5 133571400 133571652 + 3 NA intron (NM_015082, intron 2 of 15) L1ME3A|LINE|L1 41015 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 550-77 chr14 81897332 81897563 + 3 NA Intergenic L1MA8|LINE|L1 -154309 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 744-49 chr4 33530813 33531220 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 508877 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 330-346 chr3 46836546 46836762 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -2559 NR_160554 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 434-154 chr2 132991881 132992048 + 3 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 76407 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 350-564 chrX 41150521 41150791 + 3 NA intron (NM_001039591, intron 12 of 44) intron (NM_001039591, intron 12 of 44) 65211 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 1401-8 chr8 111215005 111215736 + 3 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) 20833 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 494-149 chr20 24344122 24344352 + 3 NA Intergenic L1PA13|LINE|L1 -124962 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 590-132 chr5 46150518 46150886 + 3 NA Intergenic ALR/Alpha|Satellite|centr -454322 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 494-18 chr1 209520501 209520686 + 3 NA Intergenic MSTB2|LTR|ERVL-MaLR -63121 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 524-262 chr8 104617996 104618347 + 3 NA Intergenic L2c|LINE|L2 -29147 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 440-181 chr4 63460716 63460885 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 948650 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 673-86 chr4 35886002 35886462 + 3 NA Intergenic Intergenic 357707 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 484-167 chr3 28314098 28314393 + 3 NA intron (NM_001331186, intron 3 of 4) intron (NM_001331186, intron 3 of 4) -34476 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 403-66 chr12 18938655 18938907 + 3 NA Intergenic Intergenic -190952 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 444-154 chr3 102150571 102150824 + 3 NA Intergenic L1MA3|LINE|L1 -13008 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 515-176 chr4 34296056 34296424 + 3 NA Intergenic Intergenic -26493 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 422-308 chr9 30241118 30241329 + 3 NA Intergenic Intergenic 167231 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 563-65 chr16 79381281 79381627 + 3 NA Intergenic Intergenic 219283 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 421-81 chr14 53387572 53387780 + 3 NA Intergenic Intergenic 234322 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 1000 chr1 233899390 233899880 + 3 NA Intergenic L1MA9|LINE|L1 -5041 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 521-43 chr11 13636530 13636771 + 3 NA Intergenic Intergenic -32018 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 733-58 chr4 67015350 67015757 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 406447 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 595-118 chr4 26681898 26682132 + 3 NA intron (NM_001292054, intron 8 of 17) intron (NM_001292054, intron 8 of 17) 97931 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 405-354 chrX 58249173 58249397 + 3 NA Intergenic HSAT4|Satellite|centr -338652 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 480-28 chr10 43485743 43485924 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X 48722 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 603-49 chr14 63266079 63266416 + 3 NA intron (NM_020663, intron 1 of 4) MER4D|LTR|ERV1 52688 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 766-63 chr7 4552660 4552966 + 3 NA Intergenic L1M2c|LINE|L1 -129482 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 591-44 chr15 48385795 48386143 + 3 NA Intergenic AluSc8|SINE|Alu 53772 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 505-249 chr5 93180401 93180602 + 3 NA Intergenic L1MEj|LINE|L1 390842 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 640-141 chr8 138374091 138374426 + 3 NA intron (NM_001362965, intron 1 of 19) MER11C|LTR|ERVK 123003 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 474-216 chr4 107422427 107422643 + 3 NA Intergenic L1PA16|LINE|L1 297699 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 446-221 chr4 100840031 100840315 + 3 NA Intergenic Intergenic -165060 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 420-288 chr8 91653005 91653241 + 3 NA Intergenic Intergenic 364557 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 486-190 chr22 26386325 26386601 + 3 NA Intergenic MER44B|DNA|TcMar-Tigger -42797 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 791-57 chr5 104630879 104631326 + 3 NA Intergenic Intergenic -468372 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 579-113 chr4 60469396 60469726 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -453058 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 290-224 chr2 145641739 145641916 + 3 NA Intergenic Intergenic -945230 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 422-75 chr14 49252750 49252918 + 3 NA Intergenic L1PA15|LINE|L1 333546 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 445-267 chr8 53929154 53929331 + 3 NA intron (NR_104579, intron 1 of 3) L1ME1|LINE|L1 48370 NM_003702 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 386-148 chr19 30846251 30846422 + 3 NA Intergenic MER1A|DNA|hAT-Charlie -321174 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 445-286 chr9 79750837 79751048 + 3 NA Intergenic Charlie5|DNA|hAT-Charlie -73588 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 648-117 chr5 121830615 121831050 + 3 NA Intergenic L1P4|LINE|L1 -21050 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 558-123 chr21 28574075 28574303 + 3 NA Intergenic Intergenic 34871 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 444-194 chr5 40133869 40134098 + 3 NA Intergenic Intergenic 81692 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 460-203 chr3 107227146 107227390 + 3 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 13370 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 501-88 chr18 70979980 70980258 + 3 NA Intergenic Intergenic -329165 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 267-103 chr14 28556886 28557023 + 3 NA Intergenic Intergenic 208365 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 772-53 chr8 82321249 82321732 + 3 NA Intergenic Intergenic -479204 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 580-184 chr7 64683219 64683494 + 3 NA intron (NM_001013746, intron 2 of 4) HERVH-int|LTR|ERV1 4292 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 473-230 chr5 143650743 143650935 + 3 NA Intergenic MIRb|SINE|MIR -29021 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 713-36 chr2 51934368 51934790 + 3 NA intron (NR_135237, intron 7 of 10) L2c|LINE|L2 -436069 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 386-279 chr5 14062195 14062455 + 3 NA Intergenic Intergenic -81017 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 636-146 chr8 105017506 105017813 + 3 NA Intergenic Intergenic -300779 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 282-190 chr2 5033145 5033297 + 3 NA Intergenic Intergenic -376999 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 473-101 chr16 7657446 7657736 + 3 NA intron (NM_145893, intron 9 of 13) AluSx1|SINE|Alu 324746 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 775-53 chr22 26176470 26176869 + 3 NA intron (NM_001184776, intron 1 of 14) MIR3|SINE|MIR 7195 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 219-8 chr1 68324751 68324886 + 3 NA Intergenic Intergenic -92272 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 286-170 chr18 6342744 6342934 + 3 NA intron (NM_001365765, intron 1 of 18) L1MA10|LINE|L1 16191 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 546-81 chr16 9522706 9522937 + 3 NA Intergenic L2b|LINE|L2 -67316 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 509-217 chr6 62160700 62160874 + 3 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 125438 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 463-151 chr2 149748325 149748632 + 3 NA intron (NR_110240, intron 2 of 2) L2b|LINE|L2 110713 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 447-105 chr18 57998816 57998984 + 3 NA Intergenic AluJo|SINE|Alu -45326 NM_001144967 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 625-115 chr8 108620330 108620699 + 3 NA intron (NR_136411, intron 2 of 3) MIRb|SINE|MIR 167080 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 552-201 chr7 87810458 87810683 + 3 NA intron (NM_138290, intron 10 of 11) intron (NM_138290, intron 10 of 11) 65790 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 485-222 chr5 45992153 45992448 + 3 NA Intergenic ALR/Alpha|Satellite|centr -295920 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 814-68 chrX 69821284 69821802 + 3 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) -201314 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 703-33 chr15 93686986 93687357 + 3 NA Intergenic L1PA16|LINE|L1 -169389 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 496-30 chr10 32683250 32683561 + 3 NA intron (NM_001321115, intron 22 of 43) L1PA15|LINE|L1 218067 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 421-36 chr11 23202739 23202939 + 3 NA Intergenic LTR2752|LTR|ERV1 216351 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 791-46 chr3 19604260 19604883 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -289640 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 491-18 chr10 63599396 63599598 + 3 NA intron (NM_001001330, intron 5 of 7) intron (NM_001001330, intron 5 of 7) -77607 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 513-296 chr9 99763323 99763602 + 3 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 56427 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 425-232 chr5 53717288 53717488 + 3 NA Intergenic L1PA8|LINE|L1 102294 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 553-157 chr3 118076636 118076930 + 3 NA Intergenic Intergenic -385858 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 763-23 chr18 6162470 6162984 + 3 NA intron (NM_001365769, intron 13 of 16) intron (NM_001365769, intron 13 of 16) -94017 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 1024-8 chr10 48458671 48459093 + 3 NA intron (NR_144646, intron 4 of 8) intron (NR_144646, intron 4 of 8) 34768 NM_001256026 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 439-206 chr4 60304852 60305135 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -617626 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 569-103 chr2 148693481 148693720 + 3 NA intron (NM_015630, intron 2 of 13) L2c|LINE|L2 48849 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 453-177 chr4 36478989 36479274 + 3 NA Intergenic MIR|SINE|MIR -52703 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 348-394 chr5 18443872 18444045 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 636684 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 766-32 chr19 36781342 36781733 + 3 NA Intergenic FLAM_C|SINE|Alu 8419 NM_001294306 728485 Hs.157101 NM_001294306 LOC728485 - uncharacterized LOC728485 protein-coding 699-48 chr2 52055764 52056132 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -314700 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 410-242 chr5 72904302 72904522 + 3 NA intron (NM_001364293, intron 23 of 24) intron (NM_001364293, intron 23 of 24) 25821 NR_039968 100616152 NR_039968 ENSG00000263593 MIR4804 - microRNA 4804 ncRNA 531-100 chr2 18569872 18570094 + 3 NA intron (NM_001199104, intron 9 of 10) L1ME1|LINE|L1 -9330 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 500-177 chr3 4526637 4526808 + 3 NA intron (NM_001168272, intron 4 of 60) MIRb|SINE|MIR 33374 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 315-191 chr17 52490684 52490906 + 3 NA intron (NR_146898, intron 1 of 3) L2a|LINE|L2 100273 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 755-25 chr15 63031275 63031672 + 3 NA Intergenic Intergenic -11274 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 413-286 chr7 144092162 144092378 + 3 NA Intergenic L1PA13|LINE|L1 -2838 NM_001004135 346525 Hs.553708 NM_001004135 ENSG00000221858 OR2A12 OR2A12P|OR2A16P olfactory receptor family 2 subfamily A member 12 protein-coding 265-114 chr14 86400408 86400594 + 3 NA Intergenic LTR107_Mam|LTR|LTR 465823 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 364-454 chr8 130594017 130594215 + 3 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -150442 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 633-52 chr18 3337733 3338192 + 3 NA Intergenic MER31-int|LTR|ERV1 12597 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 450-19 chr1 215829746 215829940 + 3 NA intron (NM_206933, intron 47 of 71) intron (NM_206933, intron 47 of 71) -242622 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 354-398 chr6 53940658 53940806 + 3 NA intron (NR_125842, intron 1 of 3) L1MA9|LINE|L1 10750 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 468-77 chr14 33693451 33693746 + 3 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) -15339 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 215-291 chr7 17541813 17541919 + 3 NA intron (NR_110013, intron 1 of 3) MIRb|SINE|MIR 17043 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 308-197 chr18 38388599 38388844 + 3 NA Intergenic Intergenic 731586 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 701-43 chr2 103092823 103093197 + 3 NA Intergenic L1PREC2|LINE|L1 -108581 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 569-138 chr4 123384888 123385102 + 3 NA Intergenic AluSz|SINE|Alu -11800 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 785-21 chr17 39837065 39837696 + 3 NA intron (NM_012481, intron 1 of 7) L1ME2z|LINE|L1 26808 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 740-10 chr10 32038516 32038828 + 3 NA intron (NM_004521, intron 5 of 25) intron (NM_004521, intron 5 of 25) 17753 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 358-286 chr3 4959279 4959455 + 3 NA intron (NR_125915, intron 1 of 3) L1ME2|LINE|L1 -20070 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 743-22 chr15 94761807 94762244 + 3 NA Intergenic MIRb|SINE|MIR -93338 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 614-46 chr19 43852423 43852777 + 3 NA TTS (NM_181845) TTS (NM_181845) 25279 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 541-188 chr5 110790655 110791027 + 3 NA Intergenic LTR84a|LTR|ERVL 51834 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 1080-9 chr14 72623215 72623805 + 3 NA intron (NM_001280542, intron 9 of 10) L1MC5|LINE|L1 106690 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 897-2 chr1 163629724 163630209 + 3 NA Intergenic L1MC3|LINE|L1 -206775 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 637-79 chr21 27121521 27122017 + 3 NA Intergenic Intergenic -154681 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 521-173 chr4 29119079 29119344 + 3 NA Intergenic L1MC1|LINE|L1 -95081 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 652-40 chr15 25451124 25451550 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -12281 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 721-94 chrX 87805594 87806113 + 3 NA Intergenic Intergenic 288051 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 561-24 chr10 64923187 64923510 + 3 NA intron (NR_134456, intron 1 of 1) L1M2|LINE|L1 1170 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 572-74 chr18 5208608 5208847 + 3 NA Intergenic Intergenic -10975 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 538-151 chr3 96018559 96018786 + 3 NA Intergenic L1MEg|LINE|L1 -335479 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 639-99 chr5 114566537 114566874 + 3 NA intron (NR_130785, intron 3 of 12) L1M5|LINE|L1 -9336 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 350-37 chr10 19079013 19079164 + 3 NA intron (NM_001142308, intron 2 of 39) L1M4|LINE|L1 30287 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 564-159 chr5 120408553 120408918 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -55543 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 515-234 chr6 62643340 62643626 + 3 NA Intergenic Intergenic -357256 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 624-24 chr11 90724005 90724235 + 3 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 145082 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 844-25 chr17_KI270729v1_random 5442 5946 + 3 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 409-22 chr10 41766041 41766355 + 3 NA Intergenic ALR/Alpha|Satellite|centr 601847 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 504-273 chr9 11918153 11918475 + 3 NA Intergenic L1MB3|LINE|L1 -775071 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 943-8 chr14 81416776 81417297 + 3 NA intron (NM_001366850, intron 2 of 7) intron (NM_001366850, intron 2 of 7) 10739 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 604-102 chr22 26146300 26146587 + 3 NA Intergenic Intergenic -23019 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 326-364 chr4 30423119 30423336 + 3 NA Intergenic MIR|SINE|MIR -297142 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 554-172 chr5 63705109 63705460 + 3 NA Intergenic Intergenic 257008 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 334-284 chr2 142870089 142870249 + 3 NA Intergenic Intergenic -7495 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 335-532 chr8 72544113 72544255 + 3 NA intron (NM_004770, intron 1 of 2) L2c|LINE|L2 6959 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 368-478 chr9 28632738 28632928 + 3 NA intron (NM_152570, intron 2 of 6) (AT)n|Simple_repeat|Simple_repeat 86472 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 528-104 chr16 76630537 76630860 + 3 NA Intergenic L1MA9|LINE|L1 -4300 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 284-42 chr10 60792345 60792472 + 3 NA intron (NM_033379, intron 6 of 6) intron (NM_033379, intron 6 of 6) 13930 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 523-69 chr12 129680935 129681219 + 3 NA intron (NM_133448, intron 2 of 8) LTR33A|LTR|ERVL 222948 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 445-96 chr18 3951860 3952095 + 3 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -10376 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 817-7 chr1 219258899 219259416 + 3 NA Intergenic L1PB1|LINE|L1 84188 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 538-174 chr4 65732156 65732415 + 3 NA Intergenic (TATTA)n|Simple_repeat|Simple_repeat -61790 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 508-260 chr9 102270069 102270265 + 3 NA Intergenic L1MA3|LINE|L1 -249470 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 524-269 chr8 128480017 128480302 + 3 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 84520 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 604-93 chr2 186773041 186773361 + 3 NA Intergenic L1PBa|LINE|L1 75969 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 829-23 chr22 27782239 27782675 + 3 NA intron (NM_002430, intron 1 of 1) MIR|SINE|MIR 19299 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 451-22 chr1 234259694 234259889 + 3 NA intron (NM_173508, intron 3 of 7) intron (NM_173508, intron 3 of 7) 45580 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 438-75 chr14 60001687 60001874 + 3 NA intron (NR_075071, intron 19 of 32) intron (NR_075071, intron 19 of 32) 82067 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 487-243 chr5 179029764 179030035 + 3 NA intron (NM_001353372, intron 4 of 4) intron (NM_001353372, intron 4 of 4) 6095 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 556-180 chr5 110969982 110970297 + 3 NA Intergenic Intergenic -99941 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 453-68 chr14 50709791 50710129 + 3 NA Intergenic Intergenic -41654 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 534 chr1 18368816 18369000 + 3 NA intron (NM_032880, intron 6 of 9) intron (NM_032880, intron 6 of 9) -112022 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 332-342 chr3 118134957 118135094 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -444100 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 442-258 chr6 105777485 105777708 + 3 NA Intergenic Intergenic -308740 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 386-74 chr12 28669480 28669712 + 3 NA Intergenic L1PA10|LINE|L1 -478858 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 491-107 chr2 2713467 2713732 + 3 NA Intergenic Intergenic -382324 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 464-273 chrX 93695048 93695343 + 3 NA intron (NM_001171110, intron 3 of 4) intron (NM_001171110, intron 3 of 4) 20989 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 630-45 chr2 5300889 5301280 + 3 NA Intergenic Intergenic 390034 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 520-110 chr16 60464473 60464796 + 3 NA Intergenic L2a|LINE|L2 -104841 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 594-163 chr9 82877756 82878073 + 3 NA Intergenic Intergenic 185228 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 443-243 chr5 50871287 50871482 + 3 NA Intergenic Intergenic 98803 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 554-152 chr3 177936060 177936368 + 3 NA Intergenic Intergenic 119349 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 563-67 chr17 19774037 19774267 + 3 NA 3' UTR (NM_014683, exon 27 of 27) 3' UTR (NM_014683, exon 27 of 27) -25854 NM_001330150 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 634-138 chr6 130531279 130531583 + 3 NA Intergenic L1PBa|LINE|L1 94314 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 776-20 chr17 71178288 71178699 + 3 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 23686 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 802-30 chr2 101810284 101810663 + 3 NA intron (NM_145686, intron 3 of 30) intron (NM_145686, intron 3 of 30) 112766 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 394-113 chr15 57575034 57575193 + 3 NA Intergenic Intergenic -16791 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 908-11 chr17 54916699 54917220 + 3 NA intron (NM_001321173, intron 7 of 9) HAL1ME|LINE|L1 16107 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 398-140 chr18 1810804 1810997 + 3 NA Intergenic L1MC3|LINE|L1 -451271 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 867-2 chr1 54791544 54791940 + 3 NA intron (NM_001114108, intron 1 of 6) intron (NM_001114108, intron 1 of 6) 9581 NM_001114108 55001 Hs.16230 NM_017904 ENSG00000006555 TTC22 - tetratricopeptide repeat domain 22 protein-coding 483-115 chr2 67897659 67897851 + 3 NA Intergenic Intergenic -72193 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 607-98 chr3 71913902 71914128 + 3 NA Intergenic L1PB3|LINE|L1 -128867 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 524-49 chr12 128213387 128213644 + 3 NA Intergenic Intergenic -53888 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 722-44 chr2 32974819 32975228 + 3 NA intron (NM_206943, intron 2 of 33) L1PA15|LINE|L1 28070 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 520-206 chr4 32984163 32984465 + 3 NA Intergenic Intergenic 633276 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 378-343 chr5 94357807 94358016 + 3 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -246212 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 784-19 chr14 79948033 79948402 + 3 NA Intergenic Intergenic -263202 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 321-574 chr8 121066727 121066976 + 3 NA Intergenic L1M4b|LINE|L1 -254805 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 457-200 chr5 74602739 74603014 + 3 NA Intergenic L1MA6|LINE|L1 -37147 NM_001292004 3074 Hs.69293 NM_000521 ENSG00000049860 HEXB ENC-1AS|HEL-248|HEL-S-111 hexosaminidase subunit beta protein-coding 622-15 chr11 58106178 58106436 + 3 NA intron (NM_001005212, intron 2 of 2) L1MA10|LINE|L1 13137 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 746-72 chr7 63032616 63033246 + 3 NA Intergenic L1MEc|LINE|L1 271125 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 398-78 chr12 75427086 75427305 + 3 NA intron (NR_072995, intron 5 of 6) L1M7|LINE|L1 36106 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 442-142 chr2 129096188 129096393 + 3 NA Intergenic L1MB7|LINE|L1 177601 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 1262-11 chr9 70213041 70213705 + 3 NA intron (NM_153267, intron 11 of 13) intron (NM_153267, intron 11 of 13) -37485 NR_040076 100507244 Hs.556816 NR_040076 ENSG00000204706 MAMDC2-AS1 - MAMDC2 antisense RNA 1 ncRNA 459-5 chr1 42506819 42507012 + 3 NA intron (NM_001355227, intron 6 of 18) HUERS-P3b-int|LTR|ERV1 -26105 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 494-268 chr7 54628811 54629125 + 3 NA Intergenic Intergenic 71998 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 367-456 chr8 92103989 92104285 + 3 NA promoter-TSS (NM_175634) promoter-TSS (NM_175634) -752 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 879-28 chr7 70972657 70973095 + 3 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -159268 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 394-336 chr8 131168685 131168841 + 3 NA Intergenic Intergenic -127854 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 491-287 chrX 94044299 94044625 + 3 NA Intergenic MER4-int|LTR|ERV1 370256 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 252-404 chr7 104305993 104306163 + 3 NA Intergenic L1ME3B|LINE|L1 -22578 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 382-102 chr14 27245569 27245795 + 3 NA Intergenic Intergenic 337040 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 442-115 chr19 27491576 27491827 + 3 NA Intergenic ALR/Alpha|Satellite|centr -301730 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 364-127 chr14 58864361 58864609 + 3 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 36197 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 535-6 chr1 43489150 43489446 + 3 NA Intergenic L1MB7|LINE|L1 -35309 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 422-238 chr5 36644408 36644592 + 3 NA intron (NM_004172, intron 3 of 9) intron (NM_004172, intron 3 of 9) 37894 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 459 chr1 11503279 11503525 + 3 NA intron (NM_020780, intron 3 of 20) MLT2B3|LTR|ERVL 24247 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 642-66 chr20 63300104 63300350 + 3 NA intron (NM_020882, intron 3 of 35) L1MEd|LINE|L1 7041 NM_020882 57642 Hs.271285 NM_020882 ENSG00000101203 COL20A1 - collagen type XX alpha 1 chain protein-coding 340-449 chr5 59918959 59919139 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -25323 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 684-126 chr8 139869712 139870033 + 3 NA intron (NM_001160372, intron 21 of 22) L1M2|LINE|L1 -166749 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 431-325 chr9 132673734 132673995 + 3 NA intron (NR_133925, intron 1 of 5) intron (NR_133925, intron 1 of 5) 3400 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 511-31 chr10 118800400 118800730 + 3 NA Intergenic Intergenic -45595 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 271-422 chr8 16027966 16028121 + 3 NA Intergenic Intergenic 158229 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 506-289 chr8 117095703 117095992 + 3 NA intron (NM_001172815, intron 2 of 10) L2a|LINE|L2 -39148 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 653-50 chr17 27056572 27057002 + 3 NA Intergenic L1MA6|LINE|L1 32454 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 441-114 chr2 16831021 16831236 + 3 NA Intergenic Intergenic -165294 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 471-278 chr8 139146758 139147086 + 3 NA Intergenic Intergenic -232881 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 532-120 chr2 79326211 79326466 + 3 NA Intergenic Intergenic -166585 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 703-14 chr10 73303614 73304015 + 3 NA intron (NM_001367801, intron 13 of 27) L4_B_Mam|LINE|RTE-X 51073 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 362-301 chr4 46962947 46963208 + 3 NA intron (NM_001204267, intron 7 of 7) L1MA1|LINE|L1 30504 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 808-24 chr2 22388152 22388605 + 3 NA Intergenic Intergenic -148101 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 453-222 chr6 50433420 50433660 + 3 NA Intergenic L2c|LINE|L2 -280004 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 455-170 chr3 111243745 111243914 + 3 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat 172013 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 967-2 chr1 79163559 79164123 + 3 NA Intergenic Intergenic -157111 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 280-88 chr12 34461491 34461625 + 3 NA Intergenic MER11C|LTR|ERVK 439062 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 503-307 chr9 97404302 97404548 + 3 NA Intergenic L1M4|LINE|L1 -7671 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 595-53 chr15 25604993 25605336 + 3 NA Intergenic L1MB1|LINE|L1 -166108 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 485-70 chr13 92484322 92484620 + 3 NA intron (NM_004466, intron 7 of 7) Tigger3b|DNA|TcMar-Tigger -5692 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 496-291 chr8 104695758 104695940 + 3 NA Intergenic MIR|SINE|MIR -106825 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 418-225 chr5 145275035 145275280 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 560185 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 654-25 chr11 69253340 69253845 + 3 NA Intergenic Intergenic -40563 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 554-111 chr2 34185543 34185892 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 118491 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 330-423 chr5 66502187 66502409 + 3 NA Intergenic L1MEd|LINE|L1 9306 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 548-180 chr5 46393549 46393883 + 3 NA Intergenic ALR/Alpha|Satellite|centr -697336 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 755-22 chr15 56281801 56282152 + 3 NA Intergenic Intergenic -36894 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 486-262 chr6 106810709 106810890 + 3 NA Intergenic L1PA13|LINE|L1 -23258 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 471-57 chr11 107740382 107740569 + 3 NA Intergenic L1P4a|LINE|L1 -28419 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 319-374 chr4 61221461 61221640 + 3 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 19378 NM_001371342 198-147 chr21 20482802 20482888 + 3 NA Intergenic Intergenic -224160 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 614-17 chr11 75112127 75112494 + 3 NA Intergenic L1MDa|LINE|L1 -15420 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 330-129 chr12 112719158 112719371 + 3 NA intron (NM_001347952, intron 1 of 21) LTR16C|LTR|ERVL -24088 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 547-262 chr9 29065579 29065918 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 146551 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 559-34 chr12 30144579 30144866 + 3 NA Intergenic Intergenic -359963 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 281-361 chr5 68961905 68962025 + 3 NA Intergenic Intergenic 67962 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 219-130 chr17 47165067 47165208 + 3 NA intron (NR_148340, intron 2 of 16) L1MD2|LINE|L1 24158 NM_001353050 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 313-569 chrX 55890595 55890778 + 3 NA Intergenic L1MDa|LINE|L1 -17437 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 536-18 chr1 173896590 173896772 + 3 NA 3' UTR (NM_001346115, exon 4 of 4) 3' UTR (NM_001346115, exon 4 of 4) 20646 NM_001365052 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 881-11 chr15 95048096 95048663 + 3 NA Intergenic L1M2|LINE|L1 193016 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 364-359 chr5 116046764 116046920 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -4624 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 477-183 chr21 35506638 35506894 + 3 NA intron (NR_073512, intron 1 of 2) intron (NR_073512, intron 1 of 2) 73998 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 532-129 chr2 112502941 112503317 + 3 NA exon (NM_153712, exon 5 of 7) exon (NM_153712, exon 5 of 7) 20973 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 615-21 chr11 81121026 81121248 + 3 NA Intergenic Intergenic -358334 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 763-54 chr6 39962205 39962721 + 3 NA Intergenic MamRep1151|LTR?|LTR? -28001 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 676-87 chr3 118378702 118379092 + 3 NA Intergenic Intergenic -262871 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 526-225 chr7 8474952 8475155 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 41444 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 543-55 chr11 127459018 127459255 + 3 NA Intergenic Intergenic 188066 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 530-21 chr1 227651619 227651860 + 3 NA intron (NM_001367909, intron 3 of 3) L1M3a|LINE|L1 45968 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 534-238 chr7 67990400 67990703 + 3 NA Intergenic AluSx1|SINE|Alu -29702 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 525-134 chr2 179067711 179067967 + 3 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -17702 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 377-286 chr4 45616687 45616827 + 3 NA Intergenic Intergenic 507297 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 157 chr1 35024712 35024787 + 3 NA intron (NM_007167, intron 2 of 15) intron (NM_007167, intron 2 of 15) 7196 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 305-502 chr7 35476201 35476355 + 3 NA Intergenic L1M4|LINE|L1 162423 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 827-43 chr5 58151254 58151835 + 3 NA Intergenic Intergenic -29203 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 586-111 chr4 54612131 54612511 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -5190 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 560-64 chr17 30005392 30005641 + 3 NA intron (NR_026738, intron 7 of 15) intron (NR_026738, intron 7 of 15) 63882 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 326-8 chr1 51872060 51872254 + 3 NA intron (NM_001101662, intron 1 of 30) AluSx1|SINE|Alu 5883 NM_001242361 4898 Hs.584782 NM_002525 ENSG00000078618 NRDC NRD1|hNRD1|hNRD2 nardilysin convertase protein-coding 275-79 chr12 17185269 17185466 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 196620 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 731-66 chr7 18266823 18267461 + 3 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -22950 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 930-20 chr21 20315386 20315832 + 3 NA Intergenic L1MA4|LINE|L1 -56924 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 236-371 chr8 136451162 136451299 + 3 NA Intergenic LTR1A1|LTR|ERV1 -79568 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 318-138 chr12 39610140 39610287 + 3 NA intron (NM_005164, intron 2 of 9) intron (NM_005164, intron 2 of 9) 9590 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 333-280 chr2 189417867 189418027 + 3 NA Intergenic L1MA4|LINE|L1 -23486 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 506-231 chr5 96029648 96029846 + 3 NA intron (NR_130776, intron 1 of 4) Zaphod|DNA|hAT-Tip100 -49391 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 905-27 chr4 154013340 154013778 + 3 NA Intergenic L1ME3|LINE|L1 -224476 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 880 chr1 60223609 60224017 + 3 NA Intergenic Intergenic -150043 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 391-365 chr8 126144579 126144844 + 3 NA Intergenic Intergenic -180784 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 672-52 chr2 22252461 22252820 + 3 NA Intergenic Intergenic -283839 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 413-58 chr12 4419735 4419931 + 3 NA Intergenic AluJb|SINE|Alu 25781 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 614-77 chr3 5918482 5918924 + 3 NA Intergenic L1MEg|LINE|L1 -668448 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 341-576 chrX 67040064 67040250 + 3 NA Intergenic L1M3a|LINE|L1 -400859 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 645-126 chr8 118843613 118844050 + 3 NA Intergenic LTR82A|LTR|ERVL 108054 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 754-13 chr12 10295562 10296126 + 3 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) -8602 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 809-24 chr2 42412247 42412644 + 3 NA Intergenic Intergenic -43488 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 830-21 chr19 44670372 44670773 + 3 NA promoter-TSS (NM_020219) promoter-TSS (NM_020219) -880 NM_020219 56971 Hs.416925 NM_020219 ENSG00000186567 CEACAM19 CEACM19|CEAL1 carcinoembryonic antigen related cell adhesion molecule 19 protein-coding 495-156 chr3 70838126 70838475 + 3 NA Intergenic L2a|LINE|L2 226624 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 324-196 chr16 25666784 25666976 + 3 NA Intergenic L1M1|LINE|L1 -25079 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 355-350 chr4 7629616 7629771 + 3 NA intron (NM_020777, intron 3 of 26) L2|LINE|L2 -124397 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 569-149 chr5 133113775 133114141 + 3 NA Intergenic Intergenic 61945 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 502-255 chr8 43106865 43107087 + 3 NA intron (NM_032237, intron 4 of 4) MER41-int|LTR|ERV1 13461 NM_032237 84197 Hs.491646 NM_032237 ENSG00000185900 POMK MDDGA12|MDDGC12|SGK196 protein O-mannose kinase protein-coding 469-281 chr8 81478229 81478505 + 3 NA TTS (NM_001442) TTS (NM_001442) 4866 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 295-473 chr8 106783898 106784058 + 3 NA Intergenic Intergenic -13734 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 650-13 chr11 54796414 54796802 + 3 NA Intergenic ALR/Alpha|Satellite|centr 89776 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 680-20 chr10 63371502 63371914 + 3 NA intron (NM_001322258, intron 2 of 24) L1ME4c|LINE|L1 1340 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 2105-2 chr2 95213488 95214655 + 3 NA Intergenic Intergenic 48262 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 526-25 chr10 106652015 106652324 + 3 NA intron (NM_001206569, intron 18 of 25) intron (NM_001206569, intron 18 of 25) 512004 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 267-450 chr9 74135392 74135522 + 3 NA Intergenic L1MD2|LINE|L1 -236074 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 262-51 chr10 60134585 60134760 + 3 NA intron (NM_001204403, intron 25 of 43) intron (NM_001204403, intron 25 of 43) 6344 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 547-118 chr20 1042456 1042771 + 3 NA Intergenic Intergenic -40302 NM_001040007 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 447-303 chrX 67810020 67810180 + 3 NA Intergenic L1MDa|LINE|L1 265477 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 564-104 chr2 136531064 136531359 + 3 NA Intergenic Intergenic -234334 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 769-4 chr1 215341306 215341795 + 3 NA Intergenic L1M7|LINE|L1 -225754 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 498-218 chr5 63884171 63884389 + 3 NA Intergenic L2a|LINE|L2 78012 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 335-314 chr21 25164553 25164725 + 3 NA Intergenic Intergenic 267062 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 312-556 chrX 34383966 34384153 + 3 NA Intergenic Intergenic -251729 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 496-41 chr10 116233599 116233827 + 3 NA intron (NM_005264, intron 4 of 10) intron (NM_005264, intron 4 of 10) 22082 NM_001348099 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 475-304 chrX 58418858 58419146 + 3 NA Intergenic ALR/Alpha|Satellite|centr -508369 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 508-155 chr3 141828046 141828435 + 3 NA Intergenic LTR37A|LTR|ERV1 -48403 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 395-97 chr14 70008180 70008466 + 3 NA intron (NM_001034852, intron 7 of 11) AluJo|SINE|Alu 30190 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 394-260 chr5 33777892 33778100 + 3 NA intron (NM_001324511, intron 2 of 2) L1MA9|LINE|L1 113994 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 456-154 chr2 65958165 65958478 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 400007 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 482 chr1 34122992 34123277 + 3 NA intron (NM_052896, intron 1 of 69) MER21B|LTR|ERVL 42140 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 490-299 chr8 123266632 123266899 + 3 NA intron (NM_001017926, intron 2 of 3) intron (NM_001017926, intron 2 of 3) 7521 NM_007222 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 659-49 chr19 51945002 51945348 + 3 NA exon (NM_024840, exon 6 of 6) exon (NM_024840, exon 6 of 6) -3959 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 684-57 chr2 115676759 115677163 + 3 NA intron (NM_001321912, intron 6 of 25) L1M2|LINE|L1 333146 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 196-171 chr3 83653343 83653413 + 3 NA Intergenic L2|LINE|L2 1216197 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 508-256 chr9 35129395 35129640 + 3 NA Intergenic LTR8|LTR|ERV1 -13655 NM_025182 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 214-153 chr2 22676577 22676671 + 3 NA Intergenic L1MEg|LINE|L1 140145 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 607-123 chr6 49028389 49028757 + 3 NA Intergenic MIRb|SINE|MIR 434680 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 1284-6 chr2 107645041 107645741 + 3 NA Intergenic L1MB1|LINE|L1 -108721 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 193-221 chrX 111781933 111782032 + 3 NA exon (NM_012471, exon 8 of 11) exon (NM_012471, exon 8 of 11) -94069 NM_001195576 100329135 Hs.247868 NM_001195576 ENSG00000204025 TRPC5OS TRPC5-AS1 TRPC5 opposite strand protein-coding 504-271 chr8 139257583 139257839 + 3 NA Intergenic L1MEc|LINE|L1 -343670 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 853-25 chr3 193421318 193421879 + 3 NA intron (NM_032279, intron 25 of 29) L1MA6|LINE|L1 -42845 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 632-38 chr16 34091159 34091446 + 3 NA Intergenic Intergenic -72276 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 986-12 chr12 38026776 38027267 + 3 NA Intergenic ALR/Alpha|Satellite|centr -289753 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 697-7 chr10 81166449 81166818 + 3 NA Intergenic Intergenic 516836 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 414-83 chr14 53109721 53109987 + 3 NA intron (NM_030637, intron 1 of 11) MIRb|SINE|MIR 43469 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 308-169 chr16 7463042 7463245 + 3 NA intron (NM_145893, intron 1 of 13) MLT1A0|LTR|ERVL-MaLR 130298 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 492-78 chr13 90339451 90339670 + 3 NA Intergenic L1MA4|LINE|L1 108378 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 568-82 chr18 552757 553037 + 3 NA Intergenic L1PB1|LINE|L1 -27483 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 1052-13 chr2 51485752 51486133 + 3 NA intron (NR_135237, intron 4 of 10) L2|LINE|L2 453341 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 611-6 chr1 187910647 187910902 + 3 NA Intergenic L2a|LINE|L2 467146 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 846-58 chr8 125713865 125714243 + 3 NA Intergenic L2b|LINE|L2 237143 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 342-78 chr10 94985461 94985690 + 3 NA intron (NM_000771, intron 7 of 8) intron (NM_000771, intron 7 of 8) 46917 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 460-227 chr4 136179936 136180143 + 3 NA Intergenic MER44C|DNA|TcMar-Tigger -266359 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 435-211 chr5 162841292 162841527 + 3 NA Intergenic L1MC4|LINE|L1 -596162 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 352-231 chr2 52499402 52499596 + 3 NA Intergenic Intergenic 128851 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 815-44 chr8 117451884 117452313 + 3 NA Intergenic L1MEg|LINE|L1 -68615 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 485-170 chr21 27113095 27113366 + 3 NA Intergenic Intergenic -146142 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 268-208 chr2 127038499 127038599 + 3 NA Intergenic Intergenic 43516 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 448-246 chr6 126732721 126732950 + 3 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR 248204 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 408-31 chr1 222060030 222060243 + 3 NA Intergenic Intergenic -81616 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 501-167 chr3 73362748 73362949 + 3 NA Intergenic AluJb|SINE|Alu 71147 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 820-5 chr10 72541514 72541899 + 3 NA intron (NM_006077, intron 4 of 11) LTR8B|LTR|ERV1 -17720 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 538-142 chr21 31081921 31082128 + 3 NA Intergenic Intergenic -43548 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 421-11 chr1 88640013 88640258 + 3 NA intron (NR_110682, intron 1 of 3) ERVL-B4-int|LTR|ERVL -44009 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 690-8 chr10 67584677 67584976 + 3 NA intron (NM_001127384, intron 3 of 17) L1PA5|LINE|L1 80834 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 467-127 chr2 15652666 15652977 + 3 NA Intergenic MIRb|SINE|MIR -37961 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 466-135 chr2 116279028 116279291 + 3 NA Intergenic L1PA15-16|LINE|L1 935344 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 769-42 chr3 175954101 175954406 + 3 NA Intergenic Intergenic -177920 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 273-447 chr8 72949973 72950077 + 3 NA Intergenic Intergenic -58839 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 494-249 chr6 84432391 84432651 + 3 NA intron (NR_132100, intron 4 of 4) intron (NR_132100, intron 4 of 4) 42408 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 312-368 chr4 54259661 54259875 + 3 NA intron (NM_001347829, intron 2 of 22) intron (NM_001347829, intron 2 of 22) 25808 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 1125-8 chr20 11695887 11696372 + 3 NA Intergenic Intergenic 174586 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 894-48 chr8 15039205 15039581 + 3 NA intron (NM_139167, intron 1 of 7) L1MA8|LINE|L1 -185883 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 447-83 chr15 80338683 80338913 + 3 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 3007 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 342-525 chr8 114694579 114694767 + 3 NA Intergenic L1MD3|LINE|L1 973340 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 521-230 chr7 46000703 46000964 + 3 NA Intergenic L1M3|LINE|L1 -79561 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 440-18 chr1 240921346 240921610 + 3 NA intron (NM_001282773, intron 4 of 15) L1MC2|LINE|L1 -210794 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 556-126 chr20 24534432 24534678 + 3 NA intron (NM_001323606, intron 2 of 4) intron (NM_001323606, intron 2 of 4) 64594 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 394-314 chr7 126202611 126202757 + 3 NA Intergenic L1ME3F|LINE|L1 855500 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 613-132 chr8 54198787 54199130 + 3 NA Intergenic L1MA4|LINE|L1 63717 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 625-36 chr17 47320657 47320981 + 3 NA intron (NR_110880, intron 1 of 2) AluSx3|SINE|Alu 2794 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 462-203 chr4 61806111 61806397 + 3 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 355511 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 408-28 chr1 197825344 197825610 + 3 NA Intergenic Intergenic -49997 NM_144977 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 655-23 chr11 91826804 91827110 + 3 NA Intergenic L1MC3|LINE|L1 -398077 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 503-11 chr1 86119520 86119711 + 3 NA intron (NM_152890, intron 3 of 59) intron (NM_152890, intron 3 of 59) 36856 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 420-104 chr18 1641072 1641304 + 3 NA Intergenic L1PA4|LINE|L1 -281559 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 365-376 chr7 62773716 62773908 + 3 NA Intergenic ALR/Alpha|Satellite|centr 530244 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 586-81 chr2 150238983 150239186 + 3 NA intron (NR_146972, intron 2 of 2) ERV3-16A3_I-int|LTR|ERVL 17923 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 393-114 chr16 12666797 12667016 + 3 NA intron (NM_001099455, intron 2 of 2) MER63B|DNA|hAT-Blackjack -53415 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 559-58 chr15 87118672 87118897 + 3 NA Intergenic Intergenic -130358 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 550-167 chr4 107483451 107483774 + 3 NA Intergenic L1PA17|LINE|L1 236622 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 807-45 chr7 10297515 10297933 + 3 NA Intergenic Intergenic -404952 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 387-326 chr6 170120341 170120501 + 3 NA Intergenic L1MEf|LINE|L1 -40221 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 673-91 chr5 2832917 2833220 + 3 NA Intergenic Intergenic 80937 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 1054-4 chr14 64713628 64714204 + 3 NA intron (NM_001308147, intron 1 of 16) L1MEd|LINE|L1 9492 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 590-113 chr3 146950037 146950316 + 3 NA Intergenic L1M2|LINE|L1 28253 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 695-11 chr10 37904182 37904520 + 3 NA Intergenic Intergenic -46248 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 649-126 chrX 73710208 73710592 + 3 NA Intergenic L1PREC2|LINE|L1 -81805 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 445-43 chr12 9166970 9167193 + 3 NA intron (NM_002864, intron 17 of 35) intron (NM_002864, intron 17 of 35) 41314 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 654-45 chr16 79668865 79669238 + 3 NA Intergenic L1ME2|LINE|L1 -68314 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 477-175 chr20 10945229 10945510 + 3 NA Intergenic Intergenic -36097 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 394-348 chrX 75795382 75795567 + 3 NA Intergenic L1PA5|LINE|L1 -10220 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 456-182 chr20 60704747 60705005 + 3 NA Intergenic L1MB8|LINE|L1 140314 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 427-80 chr15 47535461 47535666 + 3 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -181942 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 555-53 chr14 35491111 35491340 + 3 NA Intergenic L1MB4|LINE|L1 -42939 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 431-201 chr4 74678814 74678964 + 3 NA Intergenic L1MA2|LINE|L1 115634 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 1255-4 chr19 27623988 27624779 + 3 NA Intergenic ALR/Alpha|Satellite|centr -169048 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 654-127 chr8 121489812 121490359 + 3 NA Intergenic L1M1|LINE|L1 -149261 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 250-355 chr5 103626602 103626744 + 3 NA Intergenic Intergenic -63884 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 310-348 chr3 145426419 145426600 + 3 NA Intergenic Intergenic 642676 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 509-92 chr17 54848909 54849209 + 3 NA Intergenic Intergenic -51632 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 870-11 chr18 1041102 1041547 + 3 NA Intergenic L1PB1|LINE|L1 -113331 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 431-35 chr10 34077482 34077663 + 3 NA Intergenic AluSx|SINE|Alu -304892 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 507-253 chr8 118647539 118647770 + 3 NA intron (NR_038210, intron 2 of 4) L1MA5|LINE|L1 -25691 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 419-119 chr18 10968744 10968902 + 3 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) 179939 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 472-77 chr13 97740014 97740248 + 3 NA Intergenic HAL1|LINE|L1 -213544 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 727-4 chr1 213842160 213842605 + 3 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -82367 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 697-25 chr15 23841845 23842264 + 3 NA Intergenic L1M2|LINE|L1 -133093 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 808-5 chr10 67326850 67327323 + 3 NA intron (NM_001127384, intron 5 of 17) L1PA13|LINE|L1 76324 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 539-26 chr10 55294437 55294661 + 3 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -304493 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 483-79 chr15 100383419 100383708 + 3 NA intron (NR_120374, intron 1 of 4) intron (NR_120374, intron 1 of 4) 10624 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 340-23 chr1 157084741 157084952 + 3 NA Intergenic Intergenic 14962 NM_001004341 440695 Hs.127138 NM_001004341 ENSG00000253831 ETV3L - ETS variant 3 like protein-coding 395-193 chr2 236233124 236233343 + 3 NA intron (NM_212556, intron 3 of 5) L1ME1|LINE|L1 31112 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 673-120 chr8 108152453 108152803 + 3 NA Intergenic L1PA10|LINE|L1 -69008 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 561-195 chr8 27988507 27988798 + 3 NA intron (NM_173833, intron 1 of 8) intron (NM_173833, intron 1 of 8) 4021 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 641-15 chr10 130882371 130882773 + 3 NA Intergenic Intergenic 80096 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 378-131 chr14 45013352 45013623 + 3 NA intron (NM_001308120, intron 7 of 19) intron (NM_001308120, intron 7 of 19) 51297 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 343-95 chr12 13120228 13120480 + 3 NA Intergenic Intergenic -16687 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 249-351 chr6 49693497 49693663 + 3 NA intron (NM_001261822, intron 8 of 8) intron (NM_001261822, intron 8 of 8) 19963 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 304-62 chr10 93182925 93183072 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR 109105 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 505-241 chr5 66691187 66691520 + 3 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 94960 NM_198828 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 278-273 chr3 66686688 66686859 + 3 NA Intergenic Intergenic 51563 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 403-321 chr9 17662380 17662579 + 3 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 83413 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 411-253 chr6 67584092 67584275 + 3 NA Intergenic L1PA16|LINE|L1 -471168 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 473-302 chr9 112776320 112776631 + 3 NA intron (NM_001012994, intron 1 of 8) intron (NM_001012994, intron 1 of 8) 25715 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 353-194 chr17 71411817 71411957 + 3 NA Intergenic MER102c|DNA|hAT-Charlie -209708 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 482-188 chr4 74943631 74943844 + 3 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) 10621 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 284-242 chr21 23675997 23676120 + 3 NA Intergenic Intergenic -291223 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 1326-5 chr5 45986708 45987465 + 3 NA Intergenic ALR/Alpha|Satellite|centr -290706 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 457-187 chr4 149412697 149412965 + 3 NA intron (NM_001363507, intron 13 of 13) L2c|LINE|L2 258536 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 476-269 chr8 107105799 107106136 + 3 NA Intergenic Intergenic 230548 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 761-31 chr2 202680786 202681089 + 3 NA intron (NM_173511, intron 1 of 7) L1ME1|LINE|L1 45968 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 794-24 chr2 161148972 161149485 + 3 NA intron (NM_004180, intron 1 of 7) L1MB5|LINE|L1 -11200 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 617-118 chr6 81964312 81964687 + 3 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) -26078 NR_149134 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 514-120 chr17 71306066 71306401 + 3 NA Intergenic L1PBa|LINE|L1 -104054 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 703-81 chr6 137778955 137779452 + 3 NA Intergenic L2b|LINE|L2 -40166 NR_121619 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 275-127 chr16 28082860 28082986 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -19209 NM_001323901 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 579-20 chr10 109832302 109832593 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 90799 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 548-123 chr2 158783767 158784121 + 3 NA Intergenic Intergenic -11373 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 438-105 chr19 37195321 37195560 + 3 NA intron (NM_152279, intron 2 of 4) L1MD|LINE|L1 15096 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 742-47 chr20 61667839 61668156 + 3 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 51751 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 534-74 chr14 61412159 61412412 + 3 NA intron (NM_006255, intron 2 of 13) L1MEc|LINE|L1 90842 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 454-121 chr17 80660498 80660661 + 3 NA intron (NM_020761, intron 3 of 33) intron (NM_020761, intron 3 of 33) 115741 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 244-21 chr1 187257027 187257148 + 3 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 164245 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 622-120 chr6 114682241 114682665 + 3 NA Intergenic Intergenic -619576 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 1087-11 chr3 76017009 76017471 + 3 NA Intergenic Intergenic -231691 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 809-23 chr2 40834904 40835233 + 3 NA Intergenic L1M4b|LINE|L1 -322633 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 839-25 chr2 210428346 210428774 + 3 NA intron (NR_110606, intron 1 of 4) intron (NR_110606, intron 1 of 4) 48145 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 611-131 chr6 122502734 122503090 + 3 NA intron (NM_001270393, intron 3 of 7) MLT1A|LTR|ERVL-MaLR 30995 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 525-226 chr6 117721212 117721411 + 3 NA Intergenic L1PA3|LINE|L1 45842 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 1101-8 chr20 41870623 41871282 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -252575 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 203-236 chr8 118455363 118455474 + 3 NA intron (NM_001101676, intron 2 of 4) L2b|LINE|L2 -165583 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 460-57 chr11 132106479 132106661 + 3 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) -177732 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 484-292 chrX 98515122 98515388 + 3 NA Intergenic Intergenic -950720 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 431-295 chr8 105490809 105491047 + 3 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 171385 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 401-172 chr2 133223019 133223200 + 3 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -43086 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 348-305 chr3 95122915 95123119 + 3 NA Intergenic Intergenic 184754 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 845-15 chr2 44878643 44879150 + 3 NA Intergenic Intergenic 59992 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 712-19 chr11 115098864 115099318 + 3 NA Intergenic L2b|LINE|L2 -234486 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 662-87 chr7 1220029 1220326 + 3 NA Intergenic Intergenic -12695 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 328-77 chr11 21223008 21223131 + 3 NA intron (NM_201551, intron 13 of 18) L1MA5|LINE|L1 553483 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 456-340 chr9 75931041 75931224 + 3 NA intron (NR_120409, intron 1 of 19) intron (NR_120409, intron 1 of 19) 40459 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 684-127 chr8 142976240 142976639 + 3 NA Intergenic Intergenic -19389 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 373-255 chr3 5712893 5713051 + 3 NA Intergenic Intergenic -462717 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 763-45 chr3 114250216 114250793 + 3 NA Intergenic Intergenic -12926 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 557-125 chr22 33154469 33154822 + 3 NA Intergenic Intergenic 46116 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 369-17 chr1 174139129 174139278 + 3 NA intron (NR_121197, intron 3 of 3) intron (NR_121197, intron 3 of 3) 20084 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 665-48 chr19 58123205 58123574 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -4963 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 501-66 chr14 49229232 49229511 + 3 NA Intergenic Intergenic 357009 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 904-45 chr8 134150076 134150562 + 3 NA Intergenic Intergenic 263823 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 247-285 chr4 27758886 27759020 + 3 NA Intergenic Intergenic 541474 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 862-17 chr17 12870774 12871175 + 3 NA intron (NM_001321164, intron 1 of 20) HAL1ME|LINE|L1 46368 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 629-146 chrX 66581627 66581882 + 3 NA Intergenic L1PA10|LINE|L1 34276 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 147-62 chr3 167981095 167981149 + 3 NA Intergenic Intergenic 85174 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 583-84 chr2 39999386 39999666 + 3 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 81892 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 796-47 chr6 62609168 62609657 + 3 NA Intergenic MER21-int|LTR|ERVL -323185 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 658-24 chr10 123630090 123630497 + 3 NA Intergenic Intergenic -36062 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 492-51 chr12 3555388 3555680 + 3 NA intron (NM_019854, intron 4 of 9) L2a|LINE|L2 -62715 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 477-62 chr11 94990585 94990821 + 3 NA intron (NM_018039, intron 2 of 2) HAL1|LINE|L1 16994 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 417-161 chr2 213752802 213753026 + 3 NA intron (NR_047660, intron 9 of 14) CR1_Mam|LINE|CR1 -5153 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 1010-9 chr5 179882154 179882790 + 3 NA intron (NM_198868, intron 7 of 21) L1M8|LINE|L1 23469 NR_134283 100996419 Hs.314414 NR_134283 ENSG00000245317 LOC100996419 - uncharacterized LOC100996419 ncRNA 453-17 chr1 209537185 209537433 + 3 NA Intergenic Intergenic -46405 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 579-14 chr10 58926321 58926562 + 3 NA Intergenic L1MC4a|LINE|L1 -73077 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 651-119 chr8 87942222 87942503 + 3 NA Intergenic AluSx|SINE|Alu -68347 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 467-272 chr8 5822283 5822625 + 3 NA Intergenic LTR10A|LTR|ERV1 584094 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 1030-24 chr8 135864241 135864824 + 3 NA Intergenic Intergenic 407076 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 348-478 chr6 169470855 169470986 + 3 NA intron (NR_146875, intron 19 of 20) LTR79|LTR|ERVL -216806 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 831-32 chr3 95229459 95229898 + 3 NA Intergenic Intergenic 291415 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 446-287 chr7 111306159 111306332 + 3 NA intron (NM_032549, intron 3 of 5) L1MC1|LINE|L1 215118 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 760-56 chr4 117861861 117862258 + 3 NA intron (NR_147154, intron 1 of 1) intron (NR_147154, intron 1 of 1) 27658 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 1297-6 chr5 13293859 13294763 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -261425 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 310-97 chr12 12035784 12035897 + 3 NA Intergenic Intergenic -14021 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 552-96 chr2 12364888 12365093 + 3 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 165860 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 512-97 chr16 76988163 76988460 + 3 NA Intergenic Intergenic 119375 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 574-31 chr12 86043939 86044169 + 3 NA intron (NM_001351283, intron 2 of 5) L1P4e|LINE|L1 169759 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 194-234 chrX 145520917 145521005 + 3 NA Intergenic L1MCa|LINE|L1 273458 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 738-48 chr5 18477853 18478147 + 3 NA Intergenic Intergenic 670726 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 551-157 chr5 83508169 83508450 + 3 NA intron (NM_001164098, intron 5 of 13) intron (NM_001164098, intron 5 of 13) 36565 NM_004385 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 290-109 chr12 91759817 91760058 + 3 NA Intergenic MLT1-int|LTR|ERVL-MaLR 381776 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 699-8 chr10 25981572 25982073 + 3 NA intron (NM_001368265, intron 4 of 7) L1PBa|LINE|L1 47593 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 574-60 chr18 9154928 9155283 + 3 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 17542 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 578-121 chr3 144070417 144070682 + 3 NA Intergenic L1MB3|LINE|L1 97468 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 758-59 chr4 96719440 96719911 + 3 NA intron (NR_147149, intron 3 of 3) L1PA11|LINE|L1 408972 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 714-30 chr17 74625356 74625828 + 3 NA non-coding (NR_158152, exon 4 of 4) non-coding (NR_158152, exon 4 of 4) -1854 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 250-93 chr12 65226554 65226647 + 3 NA intron (NM_014319, intron 4 of 12) intron (NM_014319, intron 4 of 12) -52083 NM_001031679 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 485-86 chr15 25130767 25130957 + 3 NA intron (NR_146177, intron 61 of 147) L1MC4a|LINE|L1 -4780 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 544-93 chr17 73723722 73724090 + 3 NA Intergenic Intergenic -13948 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 578-92 chr2 126349944 126350199 + 3 NA Intergenic L1MB1|LINE|L1 -232086 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 2518 chr7 39547310 39548700 + 3 NA Intergenic Intergenic -18399 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 496-100 chr15 70712582 70712788 + 3 NA intron (NM_018003, intron 1 of 18) MIR3|SINE|MIR -10403 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 474-4 chr1 56893240 56893481 + 3 NA intron (NM_000562, intron 7 of 10) intron (NM_000562, intron 7 of 10) 38590 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 533-129 chr3 6549149 6549460 + 3 NA Intergenic LTR1F2|LTR|ERV1 256145 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 188-40 chr12 56644013 56644086 + 3 NA promoter-TSS (NR_003046) promoter-TSS (NR_003046) -295 NR_003046 692090 NR_003046 SNORD59B U59B small nucleolar RNA, C/D box 59B snoRNA 849-40 chr6 62122197 62122654 + 3 NA intron (NR_146874, intron 2 of 13) HERVL-int|LTR|ERVL 163800 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 940-18 chr22_KI270736v1_random 166411 166929 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 163-101 chr5 13733513 13733584 + 3 NA intron (NM_001369, intron 68 of 78) intron (NM_001369, intron 68 of 78) 210932 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 339-296 chr2 200064530 200064686 + 3 NA Intergenic Intergenic -109117 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 853-3 chr10 122912812 122913390 + 3 NA TTS (NM_001029888) TTS (NM_001029888) 2491 NM_001029888 118670 Hs.369829 NM_001029888 ENSG00000203795 FAM24A - family with sequence similarity 24 member A protein-coding 908-40 chr6 60239472 60240115 + 3 NA Intergenic ALR/Alpha|Satellite|centr -1334337 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 410-330 chr9 29396934 29397102 + 3 NA Intergenic Intergenic -183417 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 531-96 chr19 30331339 30331536 + 3 NA Intergenic Intergenic -40947 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 512-161 chr3 30797019 30797344 + 3 NA intron (NM_207359, intron 12 of 14) MLT1H|LTR|ERVL-MaLR 97480 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 487-173 chr22 34193178 34193499 + 3 NA Intergenic Intergenic -270450 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 509-235 chr7 67954702 67954879 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -65463 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 415-222 chr5 126961325 126961505 + 3 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 69143 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 1052-22 chr8 32432206 32432720 + 3 NA intron (NM_013962, intron 1 of 4) MIRb|SINE|MIR -8283 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 503-162 chr2 189540217 189540516 + 3 NA Intergenic Intergenic 40445 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 419-176 chr3 10847312 10847551 + 3 NA intron (NM_014229, intron 5 of 13) intron (NM_014229, intron 5 of 13) 31203 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 450-10 chr1 119291203 119291486 + 3 NA Intergenic Intergenic -36908 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 548-249 chr9 31649939 31650265 + 3 NA Intergenic Intergenic -268612 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 471-124 chr19 58191328 58191580 + 3 NA intron (NM_133502, intron 4 of 7) intron (NM_133502, intron 4 of 7) 8393 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 551-153 chr5 44219629 44219873 + 3 NA Intergenic Intergenic -168981 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 377-115 chr14 44589421 44589570 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 82086 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 981-27 chr6 169479308 169479940 + 3 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 222405 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 550-52 chr12 22266312 22266745 + 3 NA intron (NM_003034, intron 2 of 4) AluJr|SINE|Alu 68186 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 300-123 chr14 88254804 88254969 + 3 NA intron (NM_138317, intron 2 of 6) intron (NM_138317, intron 2 of 6) 16025 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 655-140 chrX 99606650 99606992 + 3 NA Intergenic Intergenic 803452 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 632-112 chr8 15956517 15956893 + 3 NA Intergenic Intergenic 229567 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 618-103 chr6 4571620 4571962 + 3 NA Intergenic L1MEi|LINE|L1 -38774 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 490-107 chr16 78161190 78161504 + 3 NA intron (NM_001291997, intron 3 of 7) L1MEg|LINE|L1 61693 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 428-244 chr5 144618247 144618425 + 3 NA Intergenic L1MA7|LINE|L1 412945 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 629-79 chr3 8989582 8989960 + 3 NA intron (NM_014850, intron 21 of 21) MamRep564|Unknown|Unknown -26299 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 341-435 chr5 44682854 44683032 + 3 NA Intergenic Intergenic 125850 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 629-118 chr7 41668613 41669005 + 3 NA Intergenic LTR8A|LTR|ERV1 -25110 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 465-192 chr3 176648887 176649180 + 3 NA Intergenic Intergenic -13501 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 372-230 chr2 65464358 65464653 + 3 NA Intergenic Intergenic -31906 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 352-177 chr17 11529417 11529563 + 3 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -68980 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 426-16 chr1 216122629 216122867 + 3 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 50283 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 615-79 chr22 45819866 45820198 + 3 NA intron (NM_013236, intron 10 of 11) intron (NM_013236, intron 10 of 11) 59508 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 343-428 chr5 67645067 67645267 + 3 NA intron (NR_147169, intron 1 of 2) intron (NR_147169, intron 1 of 2) 1622 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 619-20 chr10 60454072 60454365 + 3 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -64343 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 676-123 chr9 136314564 136315005 + 3 NA Intergenic HAL1|LINE|L1 -7883 NM_001291516 399693 Hs.530383 NM_001291516 ENSG00000260220 CCDC187 - coiled-coil domain containing 187 protein-coding 410-132 chr2 42338059 42338236 + 3 NA intron (NM_001319038, intron 2 of 2) intron (NM_001319038, intron 2 of 2) 21891 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 356-181 chr16 53134224 53134409 + 3 NA intron (NM_001352127, intron 1 of 38) intron (NM_001352127, intron 1 of 38) 3304 NM_001352127 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 527-237 chr6 169974694 169974994 + 3 NA Intergenic Intergenic 12221 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 678-28 chr14 72042828 72043111 + 3 NA intron (NM_001370288, intron 2 of 16) L1ME4a|LINE|L1 109442 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 782-52 chr5 42483968 42484399 + 3 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) 59202 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 462-149 chr2 160519179 160519372 + 3 NA Intergenic HAL1|LINE|L1 -25468 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 253-132 chr14 57706474 57706574 + 3 NA intron (NR_159373, intron 1 of 10) L2b|LINE|L2 158475 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 506-143 chr2 75354136 75354310 + 3 NA Intergenic Intergenic -154703 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 433-68 chr12 126821379 126821641 + 3 NA Intergenic Intergenic -49248 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 466-231 chr6 125403567 125403803 + 3 NA Intergenic L2a|LINE|L2 -101718 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 449-281 chr8 117705835 117706213 + 3 NA Intergenic L2a|LINE|L2 185311 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 394-231 chr4 14770588 14770754 + 3 NA intron (NR_126435, intron 2 of 6) MIRb|SINE|MIR 117498 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 657-112 chrX 154897307 154897713 + 3 NA intron (NM_000132, intron 21 of 25) L2a|LINE|L2 -10052 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 963-13 chr15 67673235 67673780 + 3 NA intron (NM_001206804, intron 13 of 21) intron (NM_001206804, intron 13 of 21) 124413 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 448-132 chr2 177569513 177569721 + 3 NA Intergenic Intergenic -16821 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 280-422 chr8 124927045 124927220 + 3 NA Intergenic Intergenic -14876 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 468-300 chr7 55417515 55417716 + 3 NA intron (NM_018697, intron 6 of 8) L1MEf|LINE|L1 52167 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 559-67 chr16 74057756 74057982 + 3 NA Intergenic L1MB2|LINE|L1 157652 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 931-15 chr2 126348348 126348937 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -230657 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 636-85 chr20 59120379 59120651 + 3 NA Intergenic Intergenic -70505 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 982-10 chr12 20297323 20297796 + 3 NA Intergenic L1PA15|LINE|L1 -71686 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 406-302 chr8 121395972 121396130 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -243295 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 567-31 chr10 120269692 120270013 + 3 NA Intergenic L1ME1|LINE|L1 85371 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 327-533 chrX 42231998 42232194 + 3 NA Intergenic Intergenic -308542 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 470-34 chr11 45762587 45762763 + 3 NA Intergenic L1MB7|LINE|L1 -8757 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 LINC02716 DKFZp779M0652 long intergenic non-protein coding RNA 2716 ncRNA 512-31 chr10 39130898 39131075 + 3 NA Intergenic ALR/Alpha|Satellite|centr 434390 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 874-5 chr11 48195133 48195671 + 3 NA Intergenic L1M4b|LINE|L1 -21408 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 664-66 chr21 15156740 15157222 + 3 NA Intergenic Intergenic -91981 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 849-44 chr8 8436510 8436861 + 3 NA Intergenic L1MEd|LINE|L1 -50246 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 516-142 chr2 193471380 193471650 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 721670 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 766-48 chr3 8073768 8074143 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -57648 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 578-8 chr1 90165865 90166096 + 3 NA Intergenic L2c|LINE|L2 170870 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 322-426 chr5 52224254 52224383 + 3 NA Intergenic Intergenic 216287 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 373-384 chr7 69450649 69450856 + 3 NA Intergenic MIRc|SINE|MIR 146872 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 312-459 chr6 121600282 121600409 + 3 NA Intergenic Intergenic 164699 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 486-129 chr2 10321810 10321983 + 3 NA intron (NM_134421, intron 1 of 5) L1MB7|LINE|L1 -8267 NM_001258357 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 554-81 chr14 81865024 81865320 + 3 NA Intergenic Intergenic -122034 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 674-71 chr4 135604724 135605079 + 3 NA Intergenic Intergenic 283192 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 352-49 chr10 62356031 62356273 + 3 NA intron (NR_104162, intron 1 of 3) ERVL-B4-int|LTR|ERVL -18005 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 285-193 chr2 43956297 43956419 + 3 NA intron (NM_133259, intron 14 of 37) L1MC4|LINE|L1 39631 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 1372-2 chr15 49709479 49710233 + 3 NA Intergenic L1ME3Cz|LINE|L1 88808 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 317-32 chr1 196735586 196735853 + 3 NA intron (NM_000186, intron 15 of 21) intron (NM_000186, intron 15 of 21) -39081 NM_001166624 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 866-44 chr7 2443048 2443589 + 3 NA 3' UTR (NM_018641, exon 2 of 2) 3' UTR (NM_018641, exon 2 of 2) 33065 NM_001291784 402635 NM_001291784 GRIFIN - galectin-related inter-fiber protein protein-coding 637-54 chr19 27563875 27564201 + 3 NA Intergenic ALR/Alpha|Satellite|centr -229393 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 472-58 chr12 27483535 27483791 + 3 NA intron (NM_001145010, intron 5 of 8) AluJr|SINE|Alu 16853 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 510-278 chr8 110938120 110938404 + 3 NA intron (NR_125417, intron 5 of 5) intron (NR_125417, intron 5 of 5) 89171 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 513-102 chr17 54891669 54891906 + 3 NA Intergenic Intergenic -8904 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 398-176 chr2 139260895 139261139 + 3 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat 363693 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 542-4 chr1 45058151 45058439 + 3 NA intron (NM_020883, intron 4 of 13) intron (NM_020883, intron 4 of 13) 46041 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 409-177 chr20 43777748 43778008 + 3 NA Intergenic L1MC2|LINE|L1 -50876 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 900-12 chr15 81241130 81241493 + 3 NA intron (NM_001352686, intron 2 of 18) L1ME3E|LINE|L1 41835 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 528-135 chr2 128961723 128962000 + 3 NA Intergenic L1M4b|LINE|L1 97261 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 541-105 chr19 57744236 57744544 + 3 NA Intergenic MER21-int|LTR|ERVL -2425 NR_145327 284309 Hs.720254 NM_173632 ENSG00000152443 ZNF776 - zinc finger protein 776 protein-coding 423-187 chr3 197160466 197160646 + 3 NA intron (NM_001366204, intron 5 of 24) intron (NM_001366204, intron 5 of 24) 23316 NR_158767 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 550-236 chr8 122514868 122515108 + 3 NA intron (NR_131202, intron 2 of 3) MLT1A|LTR|ERVL-MaLR 53656 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 396-10 chr1 80650591 80650817 + 3 NA Intergenic Intergenic 9417 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 660-98 chr7 53871138 53871428 + 3 NA Intergenic L1PB2|LINE|L1 -59352 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 526-124 chr2 80381722 80382013 + 3 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 68488 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 627-79 chr4 46168226 46168634 + 3 NA Intergenic Intergenic -44376 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 676-67 chr2 216069154 216069516 + 3 NA intron (NM_018441, intron 1 of 7) Tigger6a|DNA|TcMar-Tigger 12474 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 934-6 chr10 90491815 90492410 + 3 NA intron (NR_110657, intron 2 of 6) L1P4a|LINE|L1 48693 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 629-36 chr14 34388165 34388630 + 3 NA Intergenic Intergenic 73843 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 541-244 chr8 129416358 129416619 + 3 NA intron (NR_130920, intron 1 of 3) L2c|LINE|L2 67654 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 562-210 chr7 131241795 131242073 + 3 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 85845 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 655-44 chr16 65762200 65762470 + 3 NA Intergenic LTR9|LTR|ERV1 -186035 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 481-307 chr8 135670024 135670239 + 3 NA Intergenic Intergenic 212675 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1471-4 chr2 107482463 107483371 + 3 NA Intergenic L1MEf|LINE|L1 -46502 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 880-33 chr5 43760701 43761144 + 3 NA Intergenic L1M1|LINE|L1 -157692 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 458-174 chr3 99495747 99495936 + 3 NA Intergenic L1MA8|LINE|L1 -142753 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 761-21 chr18 71563558 71563928 + 3 NA intron (NR_038326, intron 1 of 4) intron (NR_038326, intron 1 of 4) 15213 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 1159-8 chr2 121568525 121569176 + 3 NA intron (NM_015282, intron 2 of 38) intron (NM_015282, intron 2 of 38) 37970 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 584-84 chr2 208586374 208586654 + 3 NA intron (NR_136588, intron 2 of 5) L1ME3F|LINE|L1 43872 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 604-59 chr16 73459300 73459679 + 3 NA Intergenic AluSz|SINE|Alu 72684 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 633-62 chr2 52201113 52201354 + 3 NA intron (NR_135237, intron 7 of 10) L1MA4A|LINE|L1 -169415 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 528-93 chr15 53173864 53174192 + 3 NA Intergenic Intergenic 57663 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 332-324 chr3 58551891 58552131 + 3 NA Intergenic L1M3f|LINE|L1 -14821 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|CBAS6|THCCox acyl-CoA oxidase 2 protein-coding 456-28 chr10 20696981 20697339 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 145190 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 311-112 chr12 118792270 118792447 + 3 NA Intergenic Intergenic -30679 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 1156-2 chr14 84213852 84214518 + 3 NA Intergenic Intergenic -1057747 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 539-124 chr2 139282886 139283088 + 3 NA Intergenic L1PB1|LINE|L1 385663 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 411-125 chr18 4165377 4165566 + 3 NA intron (NM_001242761, intron 1 of 11) L1MDb|LINE|L1 -99131 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 517-292 chr9 105014823 105015140 + 3 NA Intergenic L1MC4|LINE|L1 -86826 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 712-24 chr13 56223720 56224121 + 3 NA Intergenic Intergenic -916998 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 142-47 chr20 53982423 53982479 + 3 NA intron (NM_003657, intron 7 of 11) intron (NM_003657, intron 7 of 11) 76569 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 267-317 chr5 12361451 12361607 + 3 NA Intergenic L1ME2z|LINE|L1 -213328 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 751-29 chr19 37464152 37464590 + 3 NA intron (NM_001330482, intron 2 of 4) AluSc8|SINE|Alu 3073 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 212-211 chr3 79250578 79250707 + 3 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -161085 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 376-397 chr8 59022684 59022854 + 3 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 96378 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 645-91 chr4 97802210 97802459 + 3 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 341142 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 914-27 chr7 42866906 42867476 + 3 NA Intergenic Intergenic 44652 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 553-92 chr18 61554886 61555196 + 3 NA 3' UTR (NM_031891, exon 12 of 12) 3' UTR (NM_031891, exon 12 of 12) -193135 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 734-27 chr18 13602856 13603259 + 3 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -8057 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 431-258 chr6 130217438 130217763 + 3 NA intron (NM_001017373, intron 1 of 11) intron (NM_001017373, intron 1 of 11) -1715 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 493-126 chr19 9499787 9499994 + 3 NA Intergenic L1M4|LINE|L1 -1274 NM_001351678 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 989-11 chr2 18595845 18596251 + 3 NA Intergenic MIRb|SINE|MIR -6468 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 400-308 chr6 64770262 64770501 + 3 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -531037 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 269-302 chr5 22079807 22079976 + 3 NA intron (NM_004061, intron 4 of 14) intron (NM_004061, intron 4 of 14) -62461 NR_003921 5369 Hs.247975 NM_031887 ENSG00000168967 PMCHL1 - pro-melanin concentrating hormone like 1 (pseudogene) pseudo 453-71 chr14 82333491 82333713 + 3 NA Intergenic L1ME1|LINE|L1 -309030 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1125-7 chr2 100500893 100501386 + 3 NA Intergenic Intergenic 30657 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 392-290 chr6 141424053 141424223 + 3 NA Intergenic L1ME3A|LINE|L1 664661 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 396-229 chr3 114524315 114524448 + 3 NA intron (NR_121662, intron 3 of 6) L2a|LINE|L2 70788 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 321-91 chr11 22754246 22754465 + 3 NA intron (NM_005256, intron 5 of 6) intron (NM_005256, intron 5 of 6) 75024 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 458-186 chr4 99979459 99979614 + 3 NA intron (NR_125923, intron 1 of 3) intron (NR_125923, intron 1 of 3) 29042 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 414-344 chr9 4220973 4221164 + 3 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -68885 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 386-324 chr7 33152490 33152654 + 3 NA intron (NM_198428, intron 2 of 22) intron (NM_198428, intron 2 of 22) 23008 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 298-304 chr3 104986534 104986698 + 3 NA Intergenic L2a|LINE|L2 -380097 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 634-148 chr8 539948 540323 + 3 NA intron (NM_001256113, intron 1 of 3) intron (NM_001256113, intron 1 of 3) 4710 NM_001256113 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 284-447 chr9 115422240 115422421 + 3 NA Intergenic Intergenic 280512 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 361-432 chr8 32261840 32262077 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -178788 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 896-21 chr3 43838218 43838676 + 3 NA Intergenic L1MEd|LINE|L1 -146853 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 236-89 chr12 58425401 58425558 + 3 NA Intergenic Intergenic -166223 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 584-183 chr9 119614713 119615121 + 3 NA Intergenic MIRb|SINE|MIR -245482 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 423-115 chr19 12325025 12325288 + 3 NA intron (NM_145276, intron 1 of 3) L1MB4|LINE|L1 8477 NM_145276 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 532-126 chr2 103054505 103054698 + 3 NA Intergenic L1MA2|LINE|L1 -70172 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 625-114 chr8 103950143 103950620 + 3 NA intron (NR_145711, intron 11 of 21) L1M5|LINE|L1 131161 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 957-4 chr10 75342958 75343482 + 3 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) 46837 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 696-13 chr10 39256772 39257149 + 3 NA Intergenic ALR/Alpha|Satellite|centr 560364 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 492-285 chr9 129942147 129942468 + 3 NA intron (NM_001363755, intron 6 of 15) MER102c|DNA|hAT-Charlie 72702 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 822-4 chr1 88039659 88040065 + 3 NA Intergenic L1ME2z|LINE|L1 -644282 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 869-17 chr13 42418039 42418376 + 3 NA Intergenic Intergenic -6685 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 354-4 chr1 33666317 33666516 + 3 NA intron (NM_052896, intron 25 of 69) L1M5|LINE|L1 193771 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 376-196 chr2 128128494 128128683 + 3 NA intron (NR_027671, intron 12 of 40) AluSx3|SINE|Alu 37388 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 462-49 chr11 85438711 85438986 + 3 NA intron (NM_001142699, intron 3 of 27) L1MD2|LINE|L1 188422 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 781-9 chr12 1882561 1883091 + 3 NA intron (NM_172364, intron 13 of 37).2 intron (NM_172364, intron 13 of 37).2 35826 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 1125-5 chr17 19620615 19621214 + 3 NA Intergenic L1M4|LINE|L1 -27236 NM_001369137 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 610-70 chr17 71820992 71821354 + 3 NA Intergenic Intergenic 204806 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 417-128 chr2 40567079 40567324 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -54766 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 485 chr1 1867690 1867953 + 3 NA intron (NM_001282538, intron 1 of 9) intron (NM_001282538, intron 1 of 9) 23266 NM_002074 2782 Hs.430425 NM_002074 ENSG00000078369 GNB1 MRD42 G protein subunit beta 1 protein-coding 1350-2 chr2 17273815 17274556 + 3 NA Intergenic L2|LINE|L2 244255 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 496-239 chr6 103923392 103923766 + 3 NA Intergenic Intergenic 935967 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 320-90 chr11 79779754 79779926 + 3 NA Intergenic L2c|LINE|L2 -338810 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 462-29 chr10 63608095 63608389 + 3 NA intron (NM_001001330, intron 5 of 7) intron (NM_001001330, intron 5 of 7) -86352 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 385-345 chr6 153789218 153789377 + 3 NA Intergenic Intergenic -221199 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 506-23 chr1 194590599 194590938 + 3 NA Intergenic L1MEf|LINE|L1 1286023 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 319-5 chr1 48186000 48186162 + 3 NA Intergenic L1MC|LINE|L1 -3653 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 446-79 chr12 61667375 61667610 + 3 NA Intergenic LTR49-int|LTR|ERV1 525347 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 427-190 chr4 100983078 100983250 + 3 NA Intergenic Intergenic 257708 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 636-45 chr14 61114118 61114522 + 3 NA Intergenic Intergenic -132630 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 331-299 chr2 185042311 185042462 + 3 NA Intergenic L1M2|LINE|L1 124686 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 796-54 chr7 68372490 68372939 + 3 NA Intergenic Intergenic 352461 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 495-122 chr2 178675308 178675547 + 3 NA intron (NM_001256850, intron 145 of 312) intron (NM_001256850, intron 145 of 312) -101499 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 279-300 chr4 104913329 104913469 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -232476 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 610-171 chr8 62312750 62313118 + 3 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 64080 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 462-99 chr16 13848795 13849020 + 3 NA Intergenic Intergenic -71250 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 718-14 chr11 79259874 79260341 + 3 NA intron (NM_001098816, intron 2 of 33) Charlie23a|DNA|hAT-Charlie 142002 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 517-174 chr3 62122155 62122422 + 3 NA intron (NM_002841, intron 5 of 29) intron (NM_002841, intron 5 of 29) 196659 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 443-6 chr1 62379600 62379868 + 3 NA Intergenic L1MC5|LINE|L1 -56570 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 434-75 chr13 92851295 92851514 + 3 NA intron (NM_004466, intron 7 of 7) HAL1|LINE|L1 -129790 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 687-79 chr3 178614096 178614501 + 3 NA intron (NM_001278911, intron 1 of 4) (TATA)n|Simple_repeat|Simple_repeat 55448 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 576-108 chr3 70391702 70392034 + 3 NA Intergenic Intergenic -79230 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 269-64 chr11 41939413 41939547 + 3 NA Intergenic Intergenic 145978 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 457-139 chr20 15892458 15892724 + 3 NA non-coding (NR_130925, exon 2 of 2) non-coding (NR_130925, exon 2 of 2) 30723 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 244-261 chr4 62987587 62987724 + 3 NA Intergenic LTR2752|LTR|ERV1 -825890 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 587-36 chr12 14085759 14086004 + 3 NA Intergenic L1MB7|LINE|L1 -105525 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 606-66 chr18 6001909 6002271 + 3 NA intron (NR_158609, intron 15 of 17) L1M4|LINE|L1 -106136 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 373-289 chr4 77035298 77035466 + 3 NA 3' UTR (NM_018243, exon 10 of 10) 3' UTR (NM_018243, exon 10 of 10) 39528 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 284-284 chr4 56739072 56739243 + 3 NA Intergenic Intergenic -57451 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 434-187 chr3 87470612 87470915 + 3 NA Intergenic Intergenic -194179 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 475-60 chr12 43030096 43030254 + 3 NA Intergenic Intergenic -125140 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 215-254 chr5 61933543 61933658 + 3 NA Intergenic Intergenic -197902 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 305-474 chr6 64297606 64297812 + 3 NA intron (NM_001292009, intron 30 of 43) AluSx|SINE|Alu 490873 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 513-36 chr10 112257391 112257603 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -25903 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 308-51 chr10 27956666 27956768 + 3 NA intron (NM_001290021, intron 3 of 13) intron (NM_001290021, intron 3 of 13) 25154 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 411-175 chr3 26344780 26345098 + 3 NA Intergenic L1MD1|LINE|L1 -277867 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 342-488 chr7 68726696 68726871 + 3 NA Intergenic MER103C|DNA|hAT-Charlie 706530 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 722-84 chr9 31240570 31240860 + 3 NA Intergenic MER57A-int|LTR|ERV1 140775 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 602-5 chr1 177126673 177127044 + 3 NA intron (NM_207108, intron 1 of 21) intron (NM_207108, intron 1 of 21) 37854 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 524-80 chr16 60765639 60765907 + 3 NA Intergenic Intergenic 289993 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 461-177 chr3 139190307 139190547 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 43095 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 460-80 chr14 48105099 48105376 + 3 NA Intergenic L1MEc|LINE|L1 -310223 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 408-306 chr6 159331617 159331839 + 3 NA Intergenic Intergenic -51803 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 378-318 chr4 121439220 121439394 + 3 NA Intergenic L1M2|LINE|L1 -58289 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 537-163 chr4 19445213 19445405 + 3 NA Intergenic L1MA4A|LINE|L1 -806596 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 191-192 chr6 157692787 157692929 + 3 NA Intergenic L2c|LINE|L2 -130388 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 610-7 chr1 118369156 118369522 + 3 NA Intergenic L1MB7|LINE|L1 -184111 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 465-262 chr6 161020735 161021005 + 3 NA intron (NM_005922, intron 1 of 26) intron (NM_005922, intron 1 of 26) 29101 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 473-224 chr5 118250171 118250338 + 3 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -32320 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 626-133 chr7 144148718 144149057 + 3 NA Intergenic L1M1|LINE|L1 19774 NM_001001659 135941 Hs.534547 NM_001001659 ENSG00000221938 OR2A14 OR2A14P|OR2A6|OST182 olfactory receptor family 2 subfamily A member 14 protein-coding 917-23 chr7 21163013 21163593 + 3 NA Intergenic Intergenic -264780 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 873-3 chr10 35912843 35913308 + 3 NA Intergenic Intergenic 134773 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 348-348 chr4 34461514 34461683 + 3 NA Intergenic LTR78|LTR|ERV1 -191851 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 359-122 chr12 83567761 83568013 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 880732 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 406-84 chr14 68700786 68701003 + 3 NA Intergenic L1MD|LINE|L1 -72107 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 979-9 chr16 75490734 75491272 + 3 NA intron (NR_163480, intron 1 of 3) intron (NR_163480, intron 1 of 3) 4438 NM_021615 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST carbohydrate sulfotransferase 6 protein-coding 277-90 chr12 30651519 30651655 + 3 NA intron (NM_006390, intron 19 of 24) (TATG)n|Simple_repeat|Simple_repeat 25657 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 935-19 chr2 49601421 49601781 + 3 NA Intergenic Intergenic 372602 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 484-232 chr5 168941609 168941862 + 3 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -71492 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 400-7 chr1 78175692 78175920 + 3 NA Intergenic L1M5|LINE|L1 -53793 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 408-158 chr2 74430802 74431011 + 3 NA intron (NM_033046, intron 3 of 12) intron (NM_033046, intron 3 of 12) 9176 NM_001320824 84058 Hs.643480 NM_032118 ENSG00000005448 WDR54 - WD repeat domain 54 protein-coding 730-74 chr7 111573037 111573438 + 3 NA Intergenic L1MA1|LINE|L1 -10720 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 472-135 chr18 68752299 68752509 + 3 NA intron (NM_001093729, intron 3 of 9) intron (NM_001093729, intron 3 of 9) 37188 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 394-174 chr2 81687452 81687634 + 3 NA Intergenic LTR45B|LTR|ERV1 -220597 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 562-48 chr12 65815159 65815437 + 3 NA intron (NR_026825, intron 1 of 1) L1PB1|LINE|L1 -9162 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 1004-5 chr10 74343065 74343412 + 3 NA intron (NM_001369124, intron 4 of 9) Tigger2a|DNA|TcMar-Tigger 166475 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 824-56 chrX 85714698 85715115 + 3 NA Intergenic L1MB1|LINE|L1 -120874 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 594-21 chr11 7363887 7364367 + 3 NA intron (NM_175733, intron 3 of 6) L2c|LINE|L2 101708 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 387-211 chr21 27656966 27657230 + 3 NA Intergenic Intergenic -65281 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 485-67 chr13 78059319 78059571 + 3 NA intron (NR_047001, intron 1 of 5) LTR17|LTR|ERV1 4590 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 576-118 chr4 61030045 61030379 + 3 NA Intergenic MIRb|SINE|MIR 107593 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 380-50 chr10 83989024 83989229 + 3 NA Intergenic MIRb|SINE|MIR -150383 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 453-2 chr1 11219288 11219473 + 3 NA intron (NM_004958, intron 19 of 57) L1MEd|LINE|L1 30025 NM_021146 10218 Hs.146559 NM_021146 ENSG00000171819 ANGPTL7 AngX|CDT6|dJ647M16.1 angiopoietin like 7 protein-coding 594-150 chr8 113168694 113169054 + 3 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 208278 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 635-61 chr20 46657967 46658388 + 3 NA intron (NM_001193340, intron 2 of 12) L1ME1|LINE|L1 -6718 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 423-237 chr5 163621957 163622272 + 3 NA Intergenic Intergenic 116495 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 272-333 chr5 26251486 26251636 + 3 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 787025 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 820-11 chr12 33719905 33720242 + 3 NA Intergenic MER39|LTR|ERV1 -280254 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 520-33 chr10 57344059 57344255 + 3 NA Intergenic LTR12_|LTR|ERV1 -39598 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 531-12 chr1 180733968 180734250 + 3 NA intron (NR_137330, intron 2 of 12) MIR|SINE|MIR 102087 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 364-218 chr2 114770432 114770631 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 63017 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 640-3 chr1 106998672 106998993 + 3 NA Intergenic MER70A|LTR|ERVL -57842 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 881-26 chr3 13983568 13984022 + 3 NA intron (NR_002223, intron 1 of 2) L1MA2|LINE|L1 46488 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 282-110 chr13 44838513 44838644 + 3 NA Intergenic Intergenic -28948 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 414-171 chr2 169214795 169215008 + 3 NA intron (NM_004525, intron 35 of 78) intron (NM_004525, intron 35 of 78) 133794 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 278-219 chr2 84703326 84703514 + 3 NA exon (NM_001370, exon 50 of 77) exon (NM_001370, exon 50 of 77) 177664 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 530-279 chr9 130546526 130546784 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 32839 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 461-243 chr7 9231823 9232021 + 3 NA Intergenic Intergenic -402348 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 1059-3 chr11 98129118 98129670 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -891555 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 342-296 chr21 21256622 21256863 + 3 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 109580 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 861-5 chr12 133002833 133003340 + 3 NA intron (NM_001256279, intron 2 of 4) intron (NM_001256279, intron 2 of 4) 16719 NM_019591 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 470-209 chr5 19345355 19345517 + 3 NA Intergenic Intergenic 540836 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 418-77 chr15 27315892 27316041 + 3 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -154647 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 291-92 chr12 28245712 28245900 + 3 NA intron (NM_001352082, intron 2 of 13) L1ME3F|LINE|L1 -55068 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 871-23 chr4 43028412 43028921 + 3 NA intron (NM_001080476, intron 3 of 3) intron (NM_001080476, intron 3 of 3) 135400 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 453-191 chr4 150296358 150296518 + 3 NA intron (NM_001199282, intron 53 of 56) intron (NM_001199282, intron 53 of 56) 217993 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 459-264 chr6 138198058 138198378 + 3 NA intron (NM_020340, intron 2 of 33) MADE2|DNA|TcMar-Mariner 20272 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 566-110 chr20 44250477 44250737 + 3 NA intron (NR_046353, intron 1 of 3) MIRb|SINE|MIR 3299 NM_024034 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 149-30 chr14 51090256 51090317 + 3 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 5418 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 301-286 chr3 106755212 106755416 + 3 NA Intergenic L1MA3|LINE|L1 485324 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 655-95 chr5 44991627 44992104 + 3 NA Intergenic L2a|LINE|L2 182918 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 331-446 chr6 13240185 13240351 + 3 NA intron (NM_001322308, intron 9 of 13) intron (NM_001322308, intron 9 of 13) 43174 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 480-282 chr7 113289615 113289883 + 3 NA Intergenic L1MEd|LINE|L1 -171167 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 336-294 chr2 157721138 157721278 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -92344 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 433-101 chr15 90643189 90643394 + 3 NA 3' UTR (NM_022769, exon 15 of 15) 3' UTR (NM_022769, exon 15 of 15) -16943 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 826-61 chr7 153556501 153557064 + 3 NA Intergenic Intergenic -144548 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 466-294 chr9 122630441 122630629 + 3 NA promoter-TSS (NM_001004450) promoter-TSS (NM_001004450) -1000 NM_001004450 347169 Hs.553710 NM_001004450 ENSG00000280094 OR1B1 OR9-26|OR9-B olfactory receptor family 1 subfamily B member 1 (gene/pseudogene) protein-coding 618-91 chr4 52043270 52043664 + 3 NA Intergenic Intergenic -1338 NR_147189 105377652 Hs.298335 NR_147189 ENSG00000251040 LINC02480 - long intergenic non-protein coding RNA 2480 ncRNA 637-55 chr19 30110973 30111303 + 3 NA Intergenic Intergenic 168899 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 454-155 chr2 75976563 75976813 + 3 NA Intergenic L1PB1|LINE|L1 -265773 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 701-11 chr10 70016676 70017112 + 3 NA Intergenic L1MB3|LINE|L1 -35952 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 457-118 chr2 80077327 80077581 + 3 NA intron (NM_001282598, intron 7 of 17) L1MB7|LINE|L1 -210871 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 568-72 chr16 31918967 31919276 + 3 NA Intergenic MER41D|LTR|ERV1 45314 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 340-455 chr5 80752209 80752416 + 3 NA intron (NM_002439, intron 12 of 23) intron (NM_002439, intron 12 of 23) -97329 NM_000791 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 457-60 chr13 112684748 112685030 + 3 NA TTS (NM_207440) TTS (NM_207440) -5440 NM_032189 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 724-97 chr7 135428136 135428461 + 3 NA intron (NM_013316, intron 2 of 10) intron (NM_013316, intron 2 of 10) 81804 NM_013316 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 273-201 chr2 21551513 21551640 + 3 NA Intergenic Intergenic 159076 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 309-367 chr3 161005272 161005440 + 3 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 99376 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 596-71 chr15 58556895 58557133 + 3 NA intron (NM_000236, intron 6 of 8) intron (NM_000236, intron 6 of 8) -58279 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 834-22 chr2 76200253 76200682 + 3 NA Intergenic L1M5|LINE|L1 -489552 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 615-67 chr2 128956357 128956670 + 3 NA Intergenic AluSq|SINE|Alu 91913 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 542-136 chr3 90169161 90169400 + 3 NA Intergenic Intergenic 1061659 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 337-325 chr21 30421427 30421593 + 3 NA Intergenic Intergenic 4416 NM_181622 337960 Hs.553687 NM_181622 ENSG00000240432 KRTAP13-3 KAP13.3 keratin associated protein 13-3 protein-coding 646-14 chr1 239018082 239018423 + 3 NA Intergenic Intergenic -368316 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 519-15 chr1 239433932 239434263 + 3 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 47529 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 770-16 chr13 74875470 74875830 + 3 NA Intergenic CR1-L3A_Croc|LINE|CR1 322807 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 485-230 chr5 101494468 101494743 + 3 NA Intergenic Intergenic -591323 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 310-437 chr5 176414792 176414975 + 3 NA intron (NR_045724, intron 1 of 5) L2c|LINE|L2 1656 NM_001834 1212 Hs.484241 NM_001834 ENSG00000175416 CLTB LCB clathrin light chain B protein-coding 500-46 chr11 22293400 22293657 + 3 NA Intergenic Intergenic -44853 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 604-5 chr1 105528553 105528813 + 3 NA Intergenic Intergenic 90252 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 840-28 chr2 108880357 108880828 + 3 NA intron (NM_001351557, intron 11 of 12) Tigger1|DNA|TcMar-Tigger 93821 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 670-40 chr15 66532983 66533354 + 3 NA intron (NM_001287823, intron 13 of 17) L2a|LINE|L2 27842 NM_001287823 55055 Hs.21331 NM_017975 ENSG00000174442 ZWILCH KNTC1AP|hZwilch zwilch kinetochore protein protein-coding 515-73 chr14 79941451 79941834 + 3 NA Intergenic L1MCa|LINE|L1 -269777 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 1209-2 chr10 49657320 49658165 + 3 NA intron (NM_001142929, intron 13 of 14) HAL1|LINE|L1 -21909 NM_001042427 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 514-205 chr4 99222538 99222751 + 3 NA intron (NR_037884, intron 4 of 9) intron (NR_037884, intron 4 of 9) -3398 NM_001102470 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 401-63 chr12 40774623 40774813 + 3 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) -53220 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 417-205 chr4 98650997 98651164 + 3 NA intron (NM_005723, intron 1 of 7) L1MC4|LINE|L1 7531 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 480-180 chr22 19541247 19541436 + 3 NA Intergenic L1MDa|LINE|L1 -16004 NM_003277 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 772-18 chr13 53596126 53596538 + 3 NA Intergenic Intergenic -219087 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 477-298 chr9 25383837 25384155 + 3 NA Intergenic Intergenic 294862 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 854-34 chr4 71870681 71871063 + 3 NA Intergenic MLT2B3|LTR|ERVL -65352 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 378-288 chr3 95600497 95600675 + 3 NA Intergenic L1MC|LINE|L1 82607 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 1249-8 chr8 78864150 78864845 + 3 NA Intergenic Intergenic 26968 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 507-147 chr20 39728659 39728904 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -275680 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 589-138 chr6 14260444 14260903 + 3 NA Intergenic Intergenic 24781 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 416-44 chr10 65436407 65436595 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -134924 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 426-158 chr20 6311592 6311820 + 3 NA Intergenic L1PA15-16|LINE|L1 -115026 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 692-6 chr1 219393925 219394315 + 3 NA Intergenic MER57A-int|LTR|ERV1 163204 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 574-28 chr12 20662268 20662495 + 3 NA intron (NM_000921, intron 15 of 15) THE1C-int|LTR|ERVL-MaLR -32974 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 545-259 chrX 81870678 81870912 + 3 NA Intergenic HUERS-P1-int|LTR|ERV1 668693 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 315-96 chr12 15117080 15117255 + 3 NA intron (NM_001190726, intron 2 of 3) intron (NM_001190726, intron 2 of 3) -34756 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 448-279 chr8 70877198 70877479 + 3 NA Intergenic MIRb|SINE|MIR 207999 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 500-156 chr2 167448739 167449058 + 3 NA Intergenic L1PBa1|LINE|L1 261526 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 393-97 chr14 55473846 55474042 + 3 NA Intergenic L1M5|LINE|L1 -33399 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 529-133 chr21 23321443 23321632 + 3 NA Intergenic Intergenic 63298 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 542-172 chr5 102689787 102690151 + 3 NA Intergenic Intergenic -18505 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 627-95 chr5 134800087 134800315 + 3 NA intron (NM_001300860, intron 15 of 22) AluSz|SINE|Alu 41422 NM_001300860 9879 Hs.406549 NM_014829 ENSG00000145833 DDX46 PRPF5|Prp5 DEAD-box helicase 46 protein-coding 605-105 chr7 721679 721967 + 3 NA intron (NM_001164759, intron 1 of 10) L1MDa|LINE|L1 -4876 NM_017802 54919 Hs.535896 NM_017802 ENSG00000164818 DNAAF5 CILD18|HEATR2 dynein axonemal assembly factor 5 protein-coding 434-70 chr13 22414205 22414501 + 3 NA Intergenic L1M4|LINE|L1 204068 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 809-3 chr10 69587097 69587551 + 3 NA Intergenic LTR16A|LTR|ERVL -13902 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 647-97 chr7 131885163 131885659 + 3 NA Intergenic Intergenic -24809 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 519-27 chr10 86613856 86614060 + 3 NA Intergenic AluSx|SINE|Alu -40589 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 491-235 chr6 164751935 164752139 + 3 NA Intergenic Intergenic 70026 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 689-106 chrX 75813105 75813392 + 3 NA Intergenic L1PB2|LINE|L1 -27994 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 549-23 chr10 33806303 33806639 + 3 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -33791 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 816 chr1 87628979 87629347 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -257508 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 728-28 chr13 104191285 104191664 + 3 NA Intergenic Intergenic 766274 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 975-16 chr6 125457203 125457636 + 3 NA Intergenic L1MCa|LINE|L1 -155452 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 593-68 chr19 37452536 37452787 + 3 NA intron (NM_152484, intron 2 of 5) L1M4c|LINE|L1 14783 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 476-33 chr10 98561956 98562211 + 3 NA intron (NM_021828, intron 9 of 11) Tigger3|DNA|TcMar-Tigger -115120 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 323-294 chr20 23322425 23322603 + 3 NA Intergenic L1PB3|LINE|L1 -28277 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 486-213 chr3 147902235 147902551 + 3 NA Intergenic L1MEi|LINE|L1 -175766 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 401-111 chr15 96954093 96954369 + 3 NA Intergenic L1MD2|LINE|L1 170796 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 474-269 chr7 62898520 62898802 + 3 NA Intergenic ALR/Alpha|Satellite|centr 405395 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 492-281 chr9 71594988 71595248 + 3 NA Intergenic MER4D1|LTR|ERV1 -148147 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 899-12 chr17 9213923 9214497 + 3 NA intron (NM_004822, intron 5 of 6) L1M6|LINE|L1 -35092 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 723-80 chr8 119060953 119061366 + 3 NA intron (NM_001324095, intron 3 of 7) HAL1|LINE|L1 -6088 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 733-8 chr10 48785746 48786168 + 3 NA intron (NM_020945, intron 19 of 61) L1MD2|LINE|L1 100494 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 402-24 chr1 239577111 239577314 + 3 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -51861 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 509-52 chr11 129163247 129163473 + 3 NA intron (NM_001142685, intron 2 of 21) Cheshire|DNA|hAT-Charlie 28838 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 623-43 chr16 85505997 85506338 + 3 NA Intergenic MER3|DNA|hAT-Charlie -105242 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 328-359 chr3 104017005 104017177 + 3 NA Intergenic Intergenic -492975 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 783-57 chr5 7156496 7156885 + 3 NA Intergenic L1PA15-16|LINE|L1 112664 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 447-245 chr7 29221280 29221440 + 3 NA intron (NM_001293072, intron 1 of 12) L1MEf|LINE|L1 -12390 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 373-402 chr8 66768980 66769266 + 3 NA intron (NM_001033578, intron 1 of 16) L1MEc|LINE|L1 -1089 NR_002734 26255 Hs.647156 NR_002734 ENSG00000213005 PTTG3P PTTG3|rcPTTG1 pituitary tumor-transforming 3, pseudogene pseudo 460-187 chr3 711415 711703 + 3 NA intron (NR_110118, intron 1 of 3) L1MC1|LINE|L1 119454 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 502-162 chr21 28752364 28752655 + 3 NA Intergenic Intergenic 132858 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 383-380 chr8 78850749 78850955 + 3 NA Intergenic Intergenic 13323 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 557-182 chr7 45248179 45248423 + 3 NA Intergenic L1M4|LINE|L1 90510 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 549-48 chr12 87596335 87596561 + 3 NA Intergenic Intergenic -172364 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 497-265 chr7 79914022 79914388 + 3 NA Intergenic Intergenic -220626 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 529-68 chr14 62700064 62700291 + 3 NA 3' UTR (NM_172375, exon 10 of 10) 3' UTR (NM_172375, exon 10 of 10) 345281 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 401-223 chr4 30562994 30563216 + 3 NA Intergenic L1MA6|LINE|L1 -157264 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 360-186 chr19 8095568 8095792 + 3 NA intron (NM_032447, intron 45 of 63) L1M5|LINE|L1 42918 NM_001201359 6370 Hs.310511 NM_005624 ENSG00000131142 CCL25 Ckb15|SCYA25|TECK C-C motif chemokine ligand 25 protein-coding 788-36 chr3 116625823 116626103 + 3 NA Intergenic L1MA3|LINE|L1 73490 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 345-116 chr12 21869694 21869891 + 3 NA intron (NM_005691, intron 16 of 37) L2a|LINE|L2 66902 NM_020297 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 454-52 chr11 48300032 48300264 + 3 NA Intergenic L1M1|LINE|L1 -6075 NM_001004725 256148 Hs.553657 NM_001004725 ENSG00000176555 OR4S1 OR11-100 olfactory receptor family 4 subfamily S member 1 protein-coding 663-90 chr6 34509582 34509822 + 3 NA intron (NM_020804, intron 1 of 9) L1MB1|LINE|L1 -5170 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 310-105 chr12 70213648 70213840 + 3 NA Intergenic L1MA9|LINE|L1 -29286 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 413-81 chr14 43698268 43698539 + 3 NA Intergenic L1MC1|LINE|L1 808880 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 579-181 chr9 31715568 31716008 + 3 NA Intergenic Intergenic -334298 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 383-61 chr11 100620084 100620251 + 3 NA Intergenic Intergenic -67121 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 277-69 chr11 23660519 23660675 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -241407 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 560-181 chr8 58268741 58269037 + 3 NA intron (NR_105005, intron 2 of 7) L1P4|LINE|L1 3212 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 1024-23 chr8 18500202 18500643 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 109140 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 480-324 chrX 99549579 99549835 + 3 NA Intergenic Intergenic 860566 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 563-60 chr16 5691586 5691908 + 3 NA Intergenic Intergenic 59280 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 722-75 chr8 49016996 49017383 + 3 NA Intergenic L1PA8A|LINE|L1 -37147 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 446-243 chr5 88987313 88987606 + 3 NA intron (NR_136221, intron 3 of 6) Tigger5b|DNA|TcMar-Tigger -83354 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 507-252 chr8 114956705 114956977 + 3 NA Intergenic Intergenic 711172 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 519-99 chr2 33889708 33889933 + 3 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -161603 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 1293-8 chr8 55646787 55647567 + 3 NA Intergenic L1PA15|LINE|L1 -126199 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 355-398 chr5 44526915 44527067 + 3 NA Intergenic Intergenic -16709 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 540-103 chr19 12235546 12235871 + 3 NA Intergenic FLAM_C|SINE|Alu 40693 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 607-24 chr10 123733831 123734160 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 67640 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 293-399 chr7 34430638 34430798 + 3 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -227500 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 511-140 chr2 235122513 235122695 + 3 NA Intergenic L1ME1|LINE|L1 94869 NM_001371306 328-552 chr8 12967110 12967348 + 3 NA intron (NM_020844, intron 1 of 4) intron (NM_020844, intron 1 of 4) 21556 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 762-28 chr16 79889587 79890010 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR 94549 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 533-121 chr20 56021096 56021441 + 3 NA Intergenic Intergenic -15749 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 512-142 chr2 228205457 228205790 + 3 NA Intergenic Intergenic -23936 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 865-15 chr15 64902234 64902612 + 3 NA Intergenic AluSg|SINE|Alu -9479 NM_182703 348094 Hs.207157 NM_182703 ENSG00000166839 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 382-436 chr9 91231868 91232097 + 3 NA intron (NM_001698, intron 6 of 9) L1MA7|LINE|L1 112920 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 322-195 chr16 82064452 82064674 + 3 NA intron (NM_002153, intron 1 of 4) L1MB7|LINE|L1 29310 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 301-354 chr5 33670793 33670957 + 3 NA intron (NM_001324512, intron 5 of 21) L1MD2|LINE|L1 221115 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 545-245 chr8 127729621 127729920 + 3 NA TTS (NR_117101) TTS (NR_117101) 4197 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 457-120 chr2 114540384 114540632 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 78931 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 531-212 chr6 45212148 45212357 + 3 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -14482 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 293-449 chr8 119375372 119375547 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -40987 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 696-29 chr12 37306827 37307188 + 3 NA Intergenic ALR/Alpha|Satellite|centr -1009767 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 768-44 chr6 160662062 160662357 + 3 NA intron (NM_005577, intron 1 of 38) intron (NM_005577, intron 1 of 38) 2050 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 668-41 chr17 70673201 70673454 + 3 NA Intergenic Intergenic 503792 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 432-8 chr1 88159562 88159791 + 3 NA Intergenic Intergenic -524468 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 583-90 chr2 118164475 118164739 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 21779 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 375-406 chr8 83910590 83910728 + 3 NA Intergenic Intergenic -272128 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 400-202 chr22 30687174 30687400 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -6495 NM_001282738 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 535-203 chr5 104575014 104575269 + 3 NA Intergenic Intergenic -524333 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 989-5 chr13 80625853 80626255 + 3 NA Intergenic L1M5|LINE|L1 -284928 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 715-74 chr6 21025592 21026033 + 3 NA intron (NM_017774, intron 11 of 15) intron (NM_017774, intron 11 of 15) 486080 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 367-377 chr5 162975595 162975769 + 3 NA Intergenic MIRb|SINE|MIR -461889 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 260-343 chr5 28672845 28673019 + 3 NA Intergenic Intergenic -253938 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 514-23 chr10 27646024 27646305 + 3 NA Intergenic Intergenic -98451 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 743-92 chr9 73291351 73291752 + 3 NA Intergenic Intergenic 139686 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 862-8 chr10 101208444 101209068 + 3 NA Intergenic LTR45C|LTR|ERV1 20204 NM_006562 10660 Hs.37128 NM_006562 ENSG00000138136 LBX1 HPX-6|HPX6|LBX1H|homeobox ladybird homeobox 1 protein-coding 598-27 chr11 26167811 26168115 + 3 NA Intergenic Intergenic -21160 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 434-171 chr22 28581597 28581888 + 3 NA intron (NM_001145418, intron 2 of 22) AluJo|SINE|Alu 98123 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 675-94 chr8 69171761 69172162 + 3 NA Intergenic L1MB2|LINE|L1 -67771 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 869-8 chr10 52625166 52625546 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 130048 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 278-385 chr6 154146616 154146721 + 3 NA intron (NM_001008503, intron 3 of 3) intron (NM_001008503, intron 3 of 3) 56906 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 420-65 chr12 41550387 41550647 + 3 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 112778 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 584-165 chr7 158038496 158038828 + 3 NA intron (NM_130843, intron 10 of 21) (AT)n|Simple_repeat|Simple_repeat 184077 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 1300-4 chr3 175140707 175141286 + 3 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -25754 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 351-503 chr8 135313148 135313340 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 79113 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 344-444 chr6 164698115 164698305 + 3 NA Intergenic L1ME3A|LINE|L1 123853 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 467-291 chr8 142904728 142904960 + 3 NA Intergenic Intergenic 12999 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 584-37 chr12 44301624 44302019 + 3 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 465740 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 453-307 chrX 86472574 86472752 + 3 NA intron (NM_001139515, intron 2 of 11) intron (NM_001139515, intron 2 of 11) 209695 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 239-180 chr2 106074845 106074987 + 3 NA intron (NM_032411, intron 3 of 3) L1ME4c|LINE|L1 9228 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 1214-5 chr3 44711973 44712686 + 3 NA promoter-TSS (NM_001134442) promoter-TSS (NM_001134442) -314 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 468-48 chr11 50664095 50664264 + 3 NA Intergenic ALR/Alpha|Satellite|centr 255032 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 495-245 chr8 31819869 31820045 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 180205 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 769-61 chr7 37139420 37139856 + 3 NA intron (NM_001206480, intron 13 of 21) L1PB1|LINE|L1 141842 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 468-315 chr8 96443088 96443316 + 3 NA Intergenic Intergenic -50611 NM_002998 6383 Hs.1501 NM_002998 ENSG00000169439 SDC2 CD362|HSPG|HSPG1|SYND2 syndecan 2 protein-coding 252-50 chr10 81652703 81652905 + 3 NA Intergenic L1MA8|LINE|L1 -222390 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 264-168 chr17 69891856 69892039 + 3 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -69760 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 524-67 chr14 83045326 83045675 + 3 NA Intergenic L1MA9|LINE|L1 402868 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 911-18 chr20 34207041 34207485 + 3 NA Intergenic L1MA4|LINE|L1 -53102 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 605-83 chr3 197918287 197918519 + 3 NA intron (NM_001323030, intron 7 of 7) intron (NM_001323030, intron 7 of 7) 31522 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 690-74 chr3 176583017 176583447 + 3 NA Intergenic Intergenic 52300 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 652-84 chr4 39186690 39186992 + 3 NA intron (NM_025132, intron 3 of 36) intron (NM_025132, intron 3 of 36) 4312 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 353-43 chr1 241382444 241382707 + 3 NA Intergenic L1MEg|LINE|L1 -25345 NM_002924 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 924-16 chr13 112729603 112729970 + 3 NA intron (NM_032189, intron 1 of 28) intron (NM_032189, intron 1 of 28) 24945 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 734-18 chr12 83640169 83640579 + 3 NA Intergenic L1MA4A|LINE|L1 953219 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 309-463 chr5 161018106 161018266 + 3 NA Intergenic L1MB1|LINE|L1 -79560 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 645-95 chr5 26805517 26805870 + 3 NA Intergenic L1MCa|LINE|L1 232893 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 549-13 chr1 161762037 161762333 + 3 NA Intergenic L1M5|LINE|L1 -4135 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 1172-5 chr5 2482351 2482962 + 3 NA Intergenic L1M4|LINE|L1 -170455 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 982-9 chr11 108438009 108438603 + 3 NA intron (NR_147053, intron 3 of 12) AluSz|SINE|Alu 29223 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 236-107 chr13 101555966 101556061 + 3 NA intron (NM_001271756, intron 1 of 9) intron (NM_001271756, intron 1 of 9) 66061 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 387-67 chr11 98129731 98130046 + 3 NA Intergenic Intergenic -891061 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 1100 chr1 176620606 176621288 + 3 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 157772 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 402-152 chr2 74431706 74431844 + 3 NA intron (NM_033046, intron 3 of 12) intron (NM_033046, intron 3 of 12) 8808 NM_033046 6242 Hs.192854 NM_033046 ENSG00000114993 RTKN - rhotekin protein-coding 1081-2 chr10 60843627 60844314 + 3 NA Intergenic Intergenic 65492 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 630-152 chr9 113038368 113038773 + 3 NA 3' UTR (NM_001282515, exon 4 of 4) 3' UTR (NM_001282515, exon 4 of 4) 18154 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 615-65 chr2 102921126 102921367 + 3 NA Intergenic MIR3|SINE|MIR -25524 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 344-343 chr4 5919929 5920145 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 3291 NR_039608 100616201 NR_039608 ENSG00000263631 MIR378D1 mir-378d-1 microRNA 378d-1 ncRNA 693-41 chr16 17090887 17091266 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR -43428 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 304-185 chr16 62250964 62251188 + 3 NA Intergenic L2|LINE|L2 -214638 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 512-238 chr6 67489874 67490199 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -565315 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 488-51 chr11 91522830 91523135 + 3 NA Intergenic L2|LINE|L2 -653780 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 533-21 chr10 106056827 106057118 + 3 NA Intergenic Intergenic -83193 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 633-44 chr14 72221165 72221437 + 3 NA intron (NM_001370288, intron 2 of 16) MLT1J|LTR|ERVL-MaLR 287774 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 356-149 chr14 66855769 66855913 + 3 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -333599 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 802-48 chr4 43442120 43442622 + 3 NA Intergenic Intergenic 50172 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 725-19 chr12 133102799 133103240 + 3 NA intron (NM_001300778, intron 5 of 5) intron (NM_001300778, intron 5 of 5) 22816 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 522-111 chr17_GL000205v2_random 17484 17709 + 3 NA Intergenic CER|Satellite|Satellite 40370 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 331-478 chr6 161953801 161953944 + 3 NA intron (NM_004562, intron 6 of 11) MIRb|SINE|MIR 482895 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 521-34 chr10 91561890 91562143 + 3 NA intron (NR_024467, intron 1 of 4) THE1C-int|LTR|ERVL-MaLR 49444 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 598-66 chr19 52202388 52202703 + 3 NA intron (NR_033500, intron 2 of 13) MIR|SINE|MIR 1349 NM_001363656 5518 Hs.467192 NM_014225 ENSG00000105568 PPP2R1A MRD36|PP2A-Aalpha|PP2AA|PP2AAALPHA|PR65A protein phosphatase 2 scaffold subunit Aalpha protein-coding 506-70 chr13 22856429 22856725 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR 41604 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 756-55 chr8 48960202 48960636 + 3 NA Intergenic L1M4b|LINE|L1 -38990 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 502-103 chr16 58879623 58879875 + 3 NA Intergenic L1PA16|LINE|L1 -145433 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 428-25 chr10 66236114 66236450 + 3 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 664857 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 519-223 chr8 3855295 3855603 + 3 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) -1126998 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 432-278 chr7 124316118 124316327 + 3 NA Intergenic MLT2B1|LTR|ERVL 35874 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 638-173 chrX 42089642 42089902 + 3 NA Intergenic L1MB5|LINE|L1 -166218 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 611-87 chr2 214653182 214653620 + 3 NA Intergenic L1ME4b|LINE|L1 143219 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 1006-4 chr10 116602709 116603076 + 3 NA intron (NM_006229, intron 10 of 12) (TGTG)n|Simple_repeat|Simple_repeat 11879 NM_001303135 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 700-74 chr4 168870553 168870877 + 3 NA intron (NM_001367567, intron 1 of 11) intron (NM_001367567, intron 1 of 11) 38620 NM_001367570 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 361-331 chr4 128354469 128354773 + 3 NA Intergenic MIR3|SINE|MIR -66808 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 395-161 chr2 33336786 33336996 + 3 NA intron (NM_001166264, intron 20 of 28) intron (NM_001166264, intron 20 of 28) -81625 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 244-199 chr20 39862154 39862295 + 3 NA Intergenic MIRb|SINE|MIR -142237 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 537-134 chr2 233886415 233886697 + 3 NA Intergenic L1ME4b|LINE|L1 -18147 NR_024322 151507 Hs.355809 NM_001166217 ENSG00000224287 MSL3P1 MSL3L2 MSL complex subunit 3 pseudogene 1 pseudo 596-110 chr20 24215558 24215765 + 3 NA intron (NR_040102, intron 2 of 3) L1MC1|LINE|L1 15894 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 602-77 chr20 47558151 47558457 + 3 NA intron (NM_181659, intron 1 of 22) AluSp|SINE|Alu 56417 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 507-134 chr2 122675456 122675669 + 3 NA Intergenic Intergenic 397919 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 363-469 chr9 25169962 25170162 + 3 NA Intergenic Intergenic 508796 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 575-164 chr6 13226314 13226671 + 3 NA intron (NM_001322308, intron 7 of 13) intron (NM_001322308, intron 7 of 13) 56950 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 623-113 chr6 28303160 28303505 + 3 NA TTS (NM_001184743) TTS (NM_001184743) 21795 NM_032507 84547 Hs.144527 NM_032507 ENSG00000137338 PGBD1 HUCEP-4|SCAND4|dJ874C20.4 piggyBac transposable element derived 1 protein-coding 339-170 chr15 25198009 25198137 + 3 NA TTS (NR_003307) TTS (NR_003307) 497 NR_003307 100033453 NR_003307 ENSG00000201679 SNORD115-15 HBII-52-15 small nucleolar RNA, C/D box 115-15 snoRNA 777-19 chr13 89284358 89284710 + 3 NA Intergenic Intergenic -47644 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 448-16 chr1 170229708 170229924 + 3 NA intron (NR_146891, intron 2 of 4) intron (NR_146891, intron 2 of 4) 54392 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 597-136 chr9 22872030 22872405 + 3 NA Intergenic L1MDa|LINE|L1 226017 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 404-98 chr14 52225383 52225556 + 3 NA Intergenic Intergenic -42229 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 808-12 chr13 58110624 58110978 + 3 NA Intergenic Intergenic -55026 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 351-489 chr8 86774778 86775002 + 3 NA Intergenic Intergenic -31215 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 526-174 chr3 112349426 112349607 + 3 NA intron (NR_158642, intron 5 of 6) MIRb|SINE|MIR 16360 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 438-47 chr11 20822677 20822950 + 3 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 153227 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 526-206 chr5 129717929 129718162 + 3 NA intron (NM_133638, intron 21 of 22) intron (NM_133638, intron 21 of 22) -30049 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 306-285 chr20 52507650 52507787 + 3 NA Intergenic L1MA3|LINE|L1 -113120 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 450-214 chr3 181505969 181506240 + 3 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -63618 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 638-147 chr7 31555498 31555740 + 3 NA intron (NM_194300, intron 3 of 12) MER104|DNA|TcMar-Tc2 2617 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 486-39 chr10 108137505 108137810 + 3 NA Intergenic Intergenic -68364 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 638-117 chr5 30634269 30634500 + 3 NA Intergenic L1ME4a|LINE|L1 -559302 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 411-67 chr12 16681948 16682138 + 3 NA Intergenic Tigger4b|DNA|TcMar-Tigger -73829 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 550-181 chr5 61856631 61856955 + 3 NA Intergenic L1M5|LINE|L1 -121095 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 500-19 chr1 233554563 233554783 + 3 NA Intergenic Intergenic -59433 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 619-99 chr5 13824798 13825125 + 3 NA intron (NM_001369, intron 38 of 78) intron (NM_001369, intron 38 of 78) 119519 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 431-213 chr4 130866841 130867072 + 3 NA Intergenic L1M4b|LINE|L1 490595 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 617-109 chr5 57343469 57343764 + 3 NA Intergenic MIRb|SINE|MIR 129542 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 533-108 chr2 143497924 143498147 + 3 NA intron (NM_018460, intron 9 of 13) intron (NM_018460, intron 9 of 13) 368616 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 623-86 chr3 104576281 104576722 + 3 NA Intergenic L1PA16|LINE|L1 -790212 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 251-130 chr17 65925372 65925572 + 3 NA intron (NM_001353129, intron 19 of 26) intron (NM_001353129, intron 19 of 26) -98929 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 356-98 chr12 10020122 10020292 + 3 NA intron (NR_120484, intron 2 of 2) intron (NR_120484, intron 2 of 2) 9580 NM_001129998 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 586-38 chr11 114446113 114446461 + 3 NA intron (NM_015523, intron 5 of 6) L2a|LINE|L2 6820 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 657-27 chr14 52181658 52182136 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -85801 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 454-192 chr21 27063694 27063873 + 3 NA Intergenic L1PA16|LINE|L1 -96695 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 970-6 chr13 68320449 68320983 + 3 NA Intergenic L1PA17|LINE|L1 564609 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 476-273 chr8 119626311 119626615 + 3 NA intron (NM_001330600, intron 3 of 25) intron (NM_001330600, intron 3 of 25) 12376 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 218-145 chr2 20869077 20869183 + 3 NA Intergenic L1MB4|LINE|L1 -46000 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 533-72 chr16 54227507 54227882 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 43185 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 504-41 chr11 84278167 84278395 + 3 NA intron (NM_001142699, intron 7 of 27) L1MEc|LINE|L1 -5001 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 866-11 chr12 6339450 6339800 + 3 NA intron (NR_144351, intron 1 of 8) intron (NR_144351, intron 1 of 8) 2451 NM_001346092 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 356-420 chr6 40604624 40604786 + 3 NA Intergenic Intergenic -17341 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 788-30 chr2 154600038 154600514 + 3 NA Intergenic L1MEd|LINE|L1 -98305 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 353-129 chr13 78745257 78745457 + 3 NA Intergenic Intergenic -86202 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 551-124 chr3 102717456 102717697 + 3 NA Intergenic Intergenic 282561 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 443-258 chr6 40089860 40090038 + 3 NA Intergenic LTR23|LTR|ERV1 -155487 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 451-17 chr1 211063104 211063270 + 3 NA intron (NM_002238, intron 5 of 10) L1MA3|LINE|L1 70187 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 416-52 chr10 90411305 90411476 + 3 NA intron (NR_110657, intron 3 of 6) L1M1|LINE|L1 129415 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 564-101 chr2 70655385 70655756 + 3 NA Intergenic AluSp|SINE|Alu -101744 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 535-113 chr19 12328855 12329177 + 3 NA intron (NM_145276, intron 1 of 3) L1MCa|LINE|L1 4617 NM_145276 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 547-263 chr9 35110531 35110947 + 3 NA intron (NM_025182, intron 1 of 8) intron (NM_025182, intron 1 of 8) 713 NM_001317991 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 419-136 chr2 49627862 49628149 + 3 NA Intergenic L2a|LINE|L2 346198 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 323-185 chr17 5691019 5691174 + 3 NA Intergenic Intergenic -81138 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 608-30 chr12 24878933 24879339 + 3 NA intron (NM_001178091, intron 3 of 9) L1M4|LINE|L1 23086 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 1387 chr10 29165768 29166441 + 3 NA Intergenic L1MEc|LINE|L1 -122966 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 623-131 chr8 142227959 142228307 + 3 NA intron (NM_001366901, intron 13 of 13) MLT1F|LTR|ERVL-MaLR 29777 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 547-104 chr2 116199834 116200205 + 3 NA Intergenic L1MC1|LINE|L1 856204 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 663-99 chr6 154581090 154581414 + 3 NA Intergenic L1MEc|LINE|L1 -70567 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 449-203 chr5 12529605 12529826 + 3 NA Intergenic MIRb|SINE|MIR -45142 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 473-285 chr8 133524606 133524844 + 3 NA intron (NM_003033, intron 2 of 8) MER52A|LTR|ERV1 47162 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 466-246 chr7 31160911 31161107 + 3 NA Intergenic Intergenic 108548 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 555-2 chr1 55882423 55882678 + 3 NA Intergenic Intergenic 62413 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 845-20 chr2 141870896 141871458 + 3 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 260524 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 276-199 chr18 22552294 22552400 + 3 NA Intergenic Intergenic -134432 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 878-4 chr1 82963349 82963745 + 3 NA intron (NR_147074, intron 2 of 10) intron (NR_147074, intron 2 of 10) 21375 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 362-358 chr5 126517013 126517191 + 3 NA Intergenic L3b|LINE|CR1 51952 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 379-146 chr2 6614115 6614329 + 3 NA Intergenic L1M1|LINE|L1 19565 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 343-375 chr4 23179462 23179641 + 3 NA Intergenic L1MC3|LINE|L1 465462 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 510-100 chr16 63022193 63022517 + 3 NA Intergenic Intergenic -985917 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 391-282 chr5 23494535 23494776 + 3 NA Intergenic Intergenic -12954 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 337-219 chr18 13801698 13801851 + 3 NA Intergenic Intergenic -22375 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 398-174 chr2 124305677 124305875 + 3 NA intron (NM_130773, intron 3 of 23) MSTD|LTR|ERVL-MaLR 280489 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 122-36 chr3 121065503 121065562 + 3 NA intron (NR_145517, intron 5 of 8) MLT1F2|LTR|ERVL-MaLR 15892 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 547-223 chr7 85975325 85975644 + 3 NA Intergenic Intergenic 554362 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 510-82 chr14 82422972 82423223 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -219535 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 846-16 chr15 60600233 60600865 + 3 NA intron (NR_120342, intron 4 of 5) intron (NR_120342, intron 4 of 5) -8023 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 516-145 chr2 238941547 238941791 + 3 NA Intergenic Tigger15a|DNA|TcMar-Tigger -15400 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 520-256 chr6 74347519 74347799 + 3 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 278208 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 849-26 chr22 23349949 23350419 + 3 NA Intergenic L1PA8A|LINE|L1 23568 NR_149133 102724679 Hs.517462 NR_149133 ENSG00000236611 LINC02556 - long intergenic non-protein coding RNA 2556 ncRNA 598-65 chr19 31151732 31152091 + 3 NA intron (NR_138036, intron 4 of 4) intron (NR_138036, intron 4 of 4) -15599 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 380-6 chr1 45284099 45284318 + 3 NA Intergenic AluY|SINE|Alu -19702 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 304-474 chr6 163122094 163122233 + 3 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -68002 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 482-173 chr3 179419487 179419776 + 3 NA intron (NM_021629, intron 3 of 9) intron (NM_021629, intron 3 of 9) 31839 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 444-264 chr8 108003665 108003891 + 3 NA intron (NM_178565, intron 2 of 5) MIRb|SINE|MIR 78161 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 316-572 chr8 142197711 142197827 + 3 NA promoter-TSS (NR_024378) promoter-TSS (NR_024378) -587 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 449-78 chr14 68135033 68135318 + 3 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 311583 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 559-206 chrX 65254604 65254880 + 3 NA Intergenic L1PA14|LINE|L1 -220001 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 428-140 chr2 154763005 154763203 + 3 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 64409 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 758-49 chr20 36326328 36326739 + 3 NA intron (NM_001365621, intron 1 of 12) L1ME3|LINE|L1 20194 NM_001365621 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 456-121 chr16 55072389 55072588 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 141289 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 373-36 chr1 237317253 237317425 + 3 NA intron (NM_001035, intron 2 of 104) intron (NM_001035, intron 2 of 104) -153780 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 567-3 chr1 51567176 51567622 + 3 NA intron (NR_161259, intron 5 of 8) intron (NR_161259, intron 5 of 8) 16332 NR_161259 441884 NR_161259 CALR4P - calreticulin 4, pseudogene pseudo 310-125 chr14 26446128 26446301 + 3 NA 3' UTR (NM_001366394, exon 4 of 4) 3' UTR (NM_001366394, exon 4 of 4) 107216 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 416-359 chrX 87539659 87539872 + 3 NA intron (NM_057162, intron 1 of 10) intron (NM_057162, intron 1 of 10) 21963 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 552-228 chr9 104524728 104525046 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 2322 NM_001001919 138804 Hs.553601 NM_001001919 ENSG00000148136 OR13C4 HSHTPCRX17|HTPCRX17|OR2K1|OR37F|OR9-7 olfactory receptor family 13 subfamily C member 4 protein-coding 443-138 chr19 36748099 36748284 + 3 NA exon (NM_001193552, exon 5 of 5) exon (NM_001193552, exon 5 of 5) 24616 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 774-56 chr22 47911538 47911911 + 3 NA Intergenic L1MEf|LINE|L1 280050 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 738-78 chrX 98342427 98342876 + 3 NA Intergenic L1MA4A|LINE|L1 -778116 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 437 chr1 14045817 14046065 + 3 NA Intergenic Intergenic 296526 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 325-485 chr6 163688492 163688642 + 3 NA Intergenic Intergenic -17083 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 477-241 chr5 159474415 159474590 + 3 NA Intergenic L1MA9|LINE|L1 -8226 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 868-43 chr8 43786803 43787285 + 3 NA Intergenic ALR/Alpha|Satellite|centr 494602 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 456-17 chr1 204169698 204169930 + 3 NA Intergenic MER49|LTR|ERV1 -3477 NM_000537 5972 Hs.3210 NM_000537 ENSG00000143839 REN HNFJ2 renin protein-coding 395-11 chr1 88374806 88375014 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -309234 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 511-7 chr1 118374846 118375028 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -189709 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 486-286 chr7 130567890 130568137 + 3 NA intron (NM_001290033, intron 9 of 19) AluSq2|SINE|Alu 24560 NR_024086 53844 Hs.6421 NR_024086 COPG2IT1 CIT1|COPG2AS|DKFZP761N09121|NCRNA00170 COPG2 imprinted transcript 1 ncRNA 409-67 chr13 112643258 112643447 + 3 NA Intergenic L1MC5a|LINE|L1 -3692 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 428-265 chr6 162444690 162444918 + 3 NA intron (NM_004562, intron 1 of 11) MIRc|SINE|MIR -282328 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 556-124 chr20 10553337 10553745 + 3 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 96154 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 964-30 chr7 24271527 24271982 + 3 NA Intergenic Intergenic -12436 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 551-232 chr9 32036227 32036468 + 3 NA Intergenic L1MEf|LINE|L1 -348256 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 392-83 chr14 69332595 69332768 + 3 NA intron (NM_020692, intron 7 of 15) L2a|LINE|L2 65618 NM_004450 2079 Hs.509791 NM_004450 ENSG00000100632 ERH DROER ERH mRNA splicing and mitosis factor protein-coding 602-45 chr17 68672070 68672419 + 3 NA intron (NR_110825, intron 3 of 4) intron (NR_110825, intron 3 of 4) 44090 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 787-19 chr2 98262520 98263022 + 3 NA intron (NM_001345864, intron 15 of 21) L1M3c|LINE|L1 -83384 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 442-127 chr2 48027583 48027837 + 3 NA Intergenic L1MEd|LINE|L1 -121917 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 538-159 chr3 147053263 147053683 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 131550 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 402-219 chr3 151502261 151502416 + 3 NA Intergenic Intergenic -43629 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 732-31 chr16 8404491 8404918 + 3 NA Intergenic Intergenic 185134 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 313-5 chr1 41306427 41306616 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -54913 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 337-335 chr3 9285512 9285684 + 3 NA Intergenic MER39|LTR|ERV1 35842 NR_146969 101927440 NR_146969 ENSG00000235830 SRGAP3-AS4 - SRGAP3 antisense RNA 4 ncRNA 612-69 chr2 139557467 139557767 + 3 NA Intergenic L1MA7|LINE|L1 660293 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 921-4 chr10 105600482 105601144 + 3 NA Intergenic L1ME3A|LINE|L1 219520 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 643-79 chr3 188096263 188096606 + 3 NA Intergenic Charlie15a|DNA|hAT-Charlie -57464 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 464-239 chr7 36972445 36972682 + 3 NA intron (NM_001206480, intron 16 of 21) MLT1B|LTR|ERVL-MaLR 12549 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 568-191 chr8 32083197 32083399 + 3 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 57080 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 935-39 chr7 97231383 97232042 + 3 NA Intergenic Intergenic 115119 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 800-50 chr5 44172177 44172634 + 3 NA Intergenic L1PA13|LINE|L1 -216327 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 390-283 chr5 9798473 9798638 + 3 NA intron (NR_027112, intron 4 of 12) MIR3|SINE|MIR -55822 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 430-144 chr2 81565927 81566111 + 3 NA Intergenic L1MB1|LINE|L1 -99073 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 769-28 chr2 103592551 103592981 + 3 NA Intergenic L1PA16|LINE|L1 -608337 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 597-2 chr1 19955542 19955939 + 3 NA Intergenic MER66A|LTR|ERV1 23919 NM_001161729 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 705-58 chr2 229239819 229240081 + 3 NA intron (NM_001330158, intron 1 of 3) intron (NM_001330158, intron 1 of 3) -7858 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 516-20 chr10 43570378 43570715 + 3 NA intron (NM_001324353, intron 2 of 4) L2|LINE|L2 -2087 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 520-260 chr6 114295412 114295664 + 3 NA intron (NR_125845, intron 9 of 9) intron (NR_125845, intron 9 of 9) -232661 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 654-76 chr21 22626329 22626707 + 3 NA Intergenic (GATATA)n|Simple_repeat|Simple_repeat -452766 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 320-248 chr2 5856631 5856853 + 3 NA Intergenic Intergenic -44146 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 320-188 chr16 55468372 55468569 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -6173 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 332-23 chr1 158918860 158919086 + 3 NA Intergenic Intergenic -12579 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 912-26 chr2 183393307 183393725 + 3 NA Intergenic L1MEg|LINE|L1 269073 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 377-36 chr10 23389295 23389446 + 3 NA Intergenic Intergenic -44573 NM_001351306 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552 chromosome 10 open reading frame 67 protein-coding 777-14 chr11 112893499 112893932 + 3 NA Intergenic L2c|LINE|L2 -67705 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 831-24 chr20 18402115 18402616 + 3 NA intron (NM_001367611, intron 13 of 20) MER50|LTR|ERV1 23316 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 667-2 chr1 71592367 71592871 + 3 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 244393 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 492-85 chr14 55874385 55874766 + 3 NA Intergenic Intergenic -77901 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 549-202 chr7 131903047 131903373 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -7010 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 768-56 chr8 130940140 130940646 + 3 NA intron (NM_001115, intron 4 of 17) intron (NM_001115, intron 4 of 17) 100516 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 460-30 chr10 29756272 29756441 + 3 NA Intergenic L1ME1|LINE|L1 -19420 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 562-71 chr16 48671605 48671940 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -61592 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 489-232 chr6 147212295 147212618 + 3 NA intron (NM_139244, intron 2 of 25) MIR3|SINE|MIR -7842 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 589-129 chr5 114536954 114537291 + 3 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) -38919 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 535-136 chr2 138109663 138109970 + 3 NA Intergenic Intergenic 7932 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 548-196 chr6 52375978 52376287 + 3 NA intron (NM_133367, intron 1 of 1) intron (NM_133367, intron 1 of 1) 13981 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 481-86 chr14 47069569 47069786 + 3 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 273569 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 666-111 chr8 71077620 71078001 + 3 NA Intergenic L1MA7|LINE|L1 278896 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 249-206 chr2 106014166 106014263 + 3 NA Intergenic L1MA9|LINE|L1 -51474 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 261-6 chr1 43499334 43499465 + 3 NA Intergenic Intergenic -26638 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 662-107 chrX 38378395 38378766 + 3 NA intron (NM_000531, intron 3 of 9) intron (NM_000531, intron 3 of 9) 25976 NM_000531 5009 Hs.117050 NM_000531 ENSG00000036473 OTC OCTD ornithine carbamoyltransferase protein-coding 453-156 chr3 22514056 22514340 + 3 NA Intergenic L1MA2|LINE|L1 557059 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 337-117 chr12 42804511 42804673 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 112376 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 550-238 chr8 135015174 135015614 + 3 NA Intergenic L1MC5|LINE|L1 165459 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 411-257 chr6 93709451 93709713 + 3 NA intron (NR_015362, intron 1 of 9) intron (NR_015362, intron 1 of 9) 2580 NR_015362 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 403-291 chr7 95481218 95481401 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -4592 NM_145872 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 484-272 chr8 128942353 128942681 + 3 NA Intergenic L2|LINE|L2 23484 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 348-559 chr9 82497774 82497916 + 3 NA Intergenic L1ME3B|LINE|L1 509073 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 553-167 chr4 35717715 35718044 + 3 NA Intergenic L1MA4A|LINE|L1 526060 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 254-349 chr6 70487185 70487344 + 3 NA intron (NM_020819, intron 9 of 20) intron (NM_020819, intron 9 of 20) -73306 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 377-442 chrX 120405212 120405379 + 3 NA Intergenic L1MEc|LINE|L1 43206 NM_001142447 23439 Hs.292599 NM_012069 ENSG00000101892 ATP1B4 - ATPase Na+/K+ transporting family member beta 4 protein-coding 551-211 chr8 71078505 71078805 + 3 NA Intergenic Intergenic 278051 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 484-11 chr1 105348345 105348587 + 3 NA Intergenic L1PA14|LINE|L1 270469 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 640-132 chr8 56407078 56407428 + 3 NA Intergenic AluSq2|SINE|Alu -16543 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 479-201 chr5 128446315 128446556 + 3 NA intron (NM_001999, intron 7 of 64) intron (NM_001999, intron 7 of 64) 91810 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 919-22 chr7 48343377 48344106 + 3 NA intron (NM_152701, intron 29 of 61) intron (NM_152701, intron 29 of 61) 172283 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 664-95 chr6 40200050 40200415 + 3 NA Intergenic L1MA9|LINE|L1 155774 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 700-31 chr15 27534337 27534787 + 3 NA 3' UTR (NM_033223, exon 10 of 10) 3' UTR (NM_033223, exon 10 of 10) -373243 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 468-203 chr3 88531329 88531587 + 3 NA Intergenic Intergenic 193002 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 474-207 chr4 56540000 56540284 + 3 NA intron (NM_001256475, intron 1 of 8) MIR|SINE|MIR 9536 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 757-49 chr5 84006504 84006837 + 3 NA intron (NM_001278642, intron 8 of 9) L1PA15|LINE|L1 -285815 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 595-58 chr16 8329980 8330381 + 3 NA Intergenic Intergenic 259658 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 522-149 chr2 191902945 191903199 + 3 NA Intergenic L1ME4b|LINE|L1 -55984 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 258-105 chr13 47586285 47586380 + 3 NA Intergenic L1PA15|LINE|L1 346290 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 436-55 chr11 110803800 110804053 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie -90737 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 834-4 chr11 21676016 21676419 + 3 NA Intergenic Intergenic -516868 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 584-90 chr21 31415746 31416117 + 3 NA intron (NM_001353690, intron 1 of 27) L2|LINE|L2 -71577 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 514-160 chr2 206662384 206662602 + 3 NA intron (NM_001093730, intron 11 of 11) intron (NM_001093730, intron 11 of 11) 18266 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 642-101 chr6 131311553 131311927 + 3 NA Intergenic L1M4|LINE|L1 61336 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 1024 chr1 78998628 78999050 + 3 NA intron (NM_022159, intron 2 of 14) intron (NM_022159, intron 2 of 14) 7891 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 439-45 chr11 15571657 15571874 + 3 NA Intergenic Intergenic -72120 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 561-133 chr3 86756826 86757177 + 3 NA Intergenic L1PB2|LINE|L1 234148 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 465-241 chr5 145741064 145741280 + 3 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 94170 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 409-21 chr10 33795569 33795825 + 3 NA Intergenic Intergenic -23017 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 1002-21 chr7 51722549 51723184 + 3 NA Intergenic L1MB3|LINE|L1 -329610 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 413-252 chr5 156011089 156011268 + 3 NA Intergenic MIRb|SINE|MIR -315579 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 568-6 chr1 229894033 229894330 + 3 NA promoter-TSS (NR_146475) promoter-TSS (NR_146475) -273 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 530-272 chr9 29278610 29278808 + 3 NA Intergenic L1P4|LINE|L1 -65108 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 782-68 chr8 46055515 46056025 + 3 NA Intergenic ALR/Alpha|Satellite|centr 561873 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 489-205 chr5 58934697 58934948 + 3 NA Intergenic Intergenic 65076 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 482-226 chr6 70834756 70835053 + 3 NA intron (NM_001044305, intron 6 of 10) intron (NM_001044305, intron 6 of 10) 122156 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 371-47 chr10 55050995 55051213 + 3 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -249813 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 719-85 chr8 140002393 140002772 + 3 NA intron (NM_001160372, intron 18 of 22) L1ME1|LINE|L1 97953 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 469-301 chr9 132721512 132721709 + 3 NA Intergenic Intergenic 51146 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 501-112 chr2 121659511 121659793 + 3 NA intron (NR_037857, intron 2 of 3) MIR3|SINE|MIR 9663 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 430-45 chr10 129592673 129592946 + 3 NA intron (NM_002412, intron 2 of 4) Charlie1|DNA|hAT-Charlie 125568 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 554-127 chr2 175420565 175420899 + 3 NA Intergenic Intergenic -239022 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 854-14 chr13 93132704 93133165 + 3 NA Intergenic L1M5|LINE|L1 87593 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 386-194 chr2 208741658 208741827 + 3 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 199100 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 591-156 chr7 45538880 45539297 + 3 NA Intergenic L1MB7|LINE|L1 -35052 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 964-20 chr21 30678995 30679620 + 3 NA Intergenic L1MA4A|LINE|L1 36443 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 451-57 chr14 37464744 37464940 + 3 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 130407 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 528-76 chr13 67728783 67729116 + 3 NA Intergenic L1M1|LINE|L1 356562 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 482-146 chr20 40214083 40214245 + 3 NA Intergenic MER33|DNA|hAT-Charlie 209703 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 485-17 chr1 192671259 192671521 + 3 NA Intergenic Intergenic 35243 NM_144766 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 493-61 chr12 103082131 103082356 + 3 NA Intergenic MER94|DNA|hAT-Blackjack -69599 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 406-139 chr2 45154661 45154868 + 3 NA Intergenic (TTTT)n|Simple_repeat|Simple_repeat 100177 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 503-273 chr7 158220659 158220944 + 3 NA intron (NM_001308267, intron 2 of 21) L1PA16|LINE|L1 312012 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 322-43 chr1 216441384 216441546 + 3 NA Intergenic L1ME3A|LINE|L1 -18017 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 733-45 chr22 28572438 28572819 + 3 NA intron (NM_001145418, intron 2 of 22) L1ME3D|LINE|L1 107237 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 518-110 chr17 65508711 65508979 + 3 NA Intergenic L1ME2|LINE|L1 51304 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 811-49 chr8 126281613 126281998 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -43690 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 631-124 chr8 81335378 81335775 + 3 NA Intergenic Intergenic 55040 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 867-26 chr20 58118404 58118993 + 3 NA Intergenic L1MC3|LINE|L1 -32204 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 892-18 chr17 52936686 52937176 + 3 NA Intergenic LTR8|LTR|ERV1 -48574 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 234-35 chr10 47082216 47082391 + 3 NA Intergenic LTR12_|LTR|ERV1 170581 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 683-79 chr7 34336062 34336527 + 3 NA Intergenic L1MB7|LINE|L1 -321924 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 306-376 chr5 5927886 5928033 + 3 NA Intergenic AluY|SINE|Alu 409333 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 237-381 chr8 105009968 105010144 + 3 NA Intergenic Intergenic -308382 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 231-179 chr2 141755252 141755364 + 3 NA intron (NM_018557, intron 2 of 90) L1ME3G|LINE|L1 376393 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 505-306 chr8 84597026 84597292 + 3 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -108768 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 695-78 chr5 24579685 24580175 + 3 NA intron (NM_001362460, intron 2 of 9) L2a|LINE|L2 65048 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 256-331 chr5 109675371 109675552 + 3 NA Intergenic Intergenic -13905 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 807-37 chr21 21260112 21260613 + 3 NA intron (NM_001352592, intron 2 of 18) L1PA17|LINE|L1 113200 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 668-8 chr10 70040941 70041243 + 3 NA Intergenic Intergenic -11754 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 754-78 chr8 46513363 46513771 + 3 NA Intergenic ALR/Alpha|Satellite|centr 104076 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 359-169 chr16 51532676 51532840 + 3 NA Intergenic MIRb|SINE|MIR -229761 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 483-208 chr5 67499437 67499741 + 3 NA Intergenic L1PA16|LINE|L1 147200 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 422-12 chr1 111638969 111639234 + 3 NA intron (NM_001010935, intron 2 of 8) intron (NM_001010935, intron 2 of 8) -18703 NR_160737 107985184 NR_160737 LOC107985184 - uncharacterized LOC107985184 ncRNA 549-117 chr2 132366797 132367157 + 3 NA Intergenic Intergenic 14310 NR_135203 339742 Hs.98178 NR_135203 FAM201B - family with sequence similarity 201 member B ncRNA 556-75 chr16 72760613 72760900 + 3 NA Intergenic L1M4c|LINE|L1 -95786 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 512-265 chr8 33616640 33616920 + 3 NA Intergenic L1M3e|LINE|L1 -16674 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 454-280 chr6 145974767 145974949 + 3 NA Intergenic MIRb|SINE|MIR -10500 NM_001370327 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 494-79 chr15 91373040 91373300 + 3 NA Intergenic L1PREC2|LINE|L1 -90169 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 349-385 chr4 127741996 127742152 + 3 NA intron (NM_001318467, intron 1 of 6) L1M3|LINE|L1 11674 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 364-418 chr7 86200865 86201057 + 3 NA Intergenic Intergenic -442948 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 340-180 chr15 94824114 94824353 + 3 NA Intergenic Intergenic -31130 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 515-220 chr5 150950630 150950888 + 3 NA Intergenic Intergenic -4175 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 549-46 chr12 65422446 65422804 + 3 NA intron (NM_001031679, intron 5 of 6) L1MA8|LINE|L1 134686 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 334-230 chr18 77732223 77732457 + 3 NA Intergenic L1MA7|LINE|L1 261387 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 467-243 chr6 43985340 43985552 + 3 NA Intergenic Intergenic -15139 NR_160955 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 212-33 chr10 32846619 32846763 + 3 NA intron (NM_001321115, intron 38 of 43) intron (NM_001321115, intron 38 of 43) 54781 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 345-292 chr2 162974882 162975122 + 3 NA Intergenic Intergenic -136235 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 826-11 chr10 73003112 73003485 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -48492 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 766-59 chr6 71211258 71211705 + 3 NA Intergenic L1ME3Cz|LINE|L1 -77330 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 1061-18 chrUn_GL000216v2 15702 16278 + 3 NA NA (CATTC)n|Satellite|Satellite NA NA 540-154 chr4 33554244 33554560 + 3 NA Intergenic Intergenic 485491 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 468-106 chr17 5647406 5647634 + 3 NA Intergenic L1MEi|LINE|L1 -63011 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 508-238 chr8 102139340 102139548 + 3 NA Intergenic L1MB8|LINE|L1 14012 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 537-138 chr20 19528568 19528780 + 3 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -244078 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 821-20 chr18 37042556 37043075 + 3 NA intron (NM_001353920, intron 7 of 10) L1M4a2|LINE|L1 -119001 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 440-225 chr6 134460432 134460700 + 3 NA intron (NR_125852, intron 2 of 4) intron (NR_125852, intron 2 of 4) 18331 NR_125852 101928231 Hs.634168 NR_125852 CT69 - cancer/testis associated transcript 69 ncRNA 474-54 chr12 5935512 5935783 + 3 NA intron (NM_001278597, intron 1 of 25) X6A_LINE|LINE|CR1 9612 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 581-126 chr4 186365256 186365452 + 3 NA intron (NR_033900, intron 1 of 3) L2|LINE|L2 99165 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 517-194 chr4 72561992 72562267 + 3 NA intron (NM_014243, intron 2 of 21) intron (NM_014243, intron 2 of 21) 7092 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 146-23 chr13 96486912 96486994 + 3 NA intron (NM_153456, intron 1 of 1) L4_C_Mam|LINE|RTE-X 59724 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 666-120 chr9 27169915 27170284 + 3 NA intron (NM_001290077, intron 4 of 21) THE1C|LTR|ERVL-MaLR 60958 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 394-35 chr10 25778256 25778539 + 3 NA Intergenic Intergenic 126685 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 462-106 chr16 76036170 76036360 + 3 NA Intergenic HERV4_I-int|LTR|ERV1 -241136 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 415-127 chr2 80734974 80735222 + 3 NA Intergenic Intergenic 421719 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 251-266 chr4 41829960 41830130 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 52566 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 449-211 chr5 75302154 75302403 + 3 NA Intergenic MER83B-int|LTR|ERV1 -34890 NM_001364187 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 450-189 chr3 24148707 24148911 + 3 NA intron (NM_001354708, intron 5 of 9) intron (NM_001354708, intron 5 of 9) -2515 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 838-14 chr14 51986724 51987125 + 3 NA Intergenic L1PA16|LINE|L1 -2622 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 443-261 chr6 62320660 62320952 + 3 NA Intergenic Intergenic -34579 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 312-503 chr7 144052903 144053050 + 3 NA Intergenic Intergenic 2574 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 403-61 chr11 104793854 104793997 + 3 NA Intergenic Intergenic 104745 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 955-4 chr10 98049564 98050144 + 3 NA Intergenic L1ME1|LINE|L1 -19026 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 622-80 chr20 58481980 58482339 + 3 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 32779 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 173-76 chr2 182835185 182835251 + 3 NA intron (NM_001463, intron 5 of 5) intron (NM_001463, intron 5 of 5) 31419 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 629 chr1 47664020 47664512 + 3 NA Intergenic Intergenic -226949 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 331-182 chr16 3465770 3465918 + 3 NA intron (NM_001317095, intron 1 of 5) L2b|LINE|L2 7799 NM_001317094 79903 Hs.513296 NM_024845 ENSG00000122390 NAA60 HAT4|NAT15|NatF|hNaa60 N(alpha)-acetyltransferase 60, NatF catalytic subunit protein-coding 548-243 chr8 131698805 131699056 + 3 NA Intergenic Intergenic -205163 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 835-8 chr11 65748831 65749362 + 3 NA Intergenic L1MB7|LINE|L1 -28158 NM_032193 84153 Hs.718438 NM_032193 ENSG00000172922 RNASEH2C AGS3|AYP1 ribonuclease H2 subunit C protein-coding 499-97 chr18 62751317 62751538 + 3 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 35886 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 345-153 chr14 61099331 61099497 + 3 NA Intergenic Intergenic -117724 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 359-201 chr18 64588844 64589032 + 3 NA Intergenic L1M5|LINE|L1 -328883 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 820-15 chr13 92770232 92770762 + 3 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -48883 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 544-124 chr2 128218616 128218828 + 3 NA Intergenic L1MD2|LINE|L1 100146 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 703-50 chr2 137734172 137734637 + 3 NA Intergenic L1MB1|LINE|L1 193528 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 369-68 chr11 101585843 101586070 + 3 NA Intergenic MIRc|SINE|MIR -1949 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 637-82 chr3 88346943 88347325 + 3 NA intron (NM_001368167, intron 2 of 2) Tigger1|DNA|TcMar-Tigger 8678 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 316-222 chr18 12724137 12724273 + 3 NA intron (NM_147163, intron 5 of 6) intron (NM_147163, intron 5 of 6) 21163 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 505-185 chr22 20998609 20998963 + 3 NA TTS (NM_030573) TTS (NM_030573) -3136 NR_027052 439931 Hs.517430 NR_027051 ENSG00000230513 THAP7-AS1 - THAP7 antisense RNA 1 ncRNA 612-90 chr3 60423649 60423989 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 194051 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 528-25 chr10 7145835 7146134 + 3 NA Intergenic Intergenic 40800 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 430-197 chr3 106479932 106480188 + 3 NA Intergenic L1MA9|LINE|L1 -610659 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 467-307 chrX 106563483 106563670 + 3 NA Intergenic Intergenic -48354 NM_001184782 55086 Hs.274267 NM_018015 ENSG00000147231 RADX CXorf57 RPA1 related single stranded DNA binding protein, X-linked protein-coding 647-100 chr8 36520554 36520945 + 3 NA Intergenic Intergenic -263625 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 489-124 chr2 22417211 22417453 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -119147 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 434-79 chr14 47236996 47237186 + 3 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 106155 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 496-306 chr9 80581162 80581522 + 3 NA Intergenic Intergenic 606319 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 380-250 chr3 95155599 95155772 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 217422 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 405-295 chr7 28025226 28025463 + 3 NA intron (NM_175061, intron 1 of 4) MIRc|SINE|MIR -155113 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 470-223 chr5 150952213 150952488 + 3 NA Intergenic Intergenic -5766 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 482-211 chr5 141262175 141262417 + 3 NA Intergenic AluSz|SINE|Alu 16901 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 599-43 chr17 52699827 52700147 + 3 NA Intergenic Intergenic -162134 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 639-26 chr12 18000236 18000578 + 3 NA Intergenic MER70B|LTR|ERVL 89786 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 522-131 chr2 78510878 78511204 + 3 NA Intergenic Intergenic -34490 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 345-296 chr2 181204008 181204147 + 3 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 80240 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 635-89 chr5 103869469 103869761 + 3 NA Intergenic Intergenic -306826 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 612-124 chr6 130343973 130344285 + 3 NA intron (NM_001258275, intron 1 of 13) L1ME4a|LINE|L1 21739 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 553-39 chr12 13002275 13002595 + 3 NA non-coding (NR_002774, exon 1 of 1) non-coding (NR_002774, exon 1 of 1) 1993 NR_002774 93164 Hs.593282 NR_002774 ENSG00000183935 HTR7P1 HTR7P 5-hydroxytryptamine receptor 7 pseudogene 1 pseudo 382-34 chr10 54583025 54583201 + 3 NA intron (NR_134503, intron 2 of 5) L1ME3D|LINE|L1 24844 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 429-217 chr4 143033515 143033694 + 3 NA Intergenic MIRb|SINE|MIR 151257 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 395-207 chr21 31034516 31034728 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 3854 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 634-119 chr4 123291133 123291407 + 3 NA intron (NM_001345856, intron 15 of 15) L1PB3|LINE|L1 -105525 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 497-215 chr5 11034615 11034825 + 3 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -273486 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 352-149 chr14 62876149 62876309 + 3 NA intron (NM_139318, intron 7 of 10) L1M4|LINE|L1 169229 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 516-96 chr16 77009787 77010019 + 3 NA Intergenic Intergenic 140967 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 466-129 chr2 81718260 81718513 + 3 NA Intergenic MIRb|SINE|MIR -251440 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 492-48 chr11 115161372 115161678 + 3 NA Intergenic L2b|LINE|L2 -172052 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 612-39 chr14 78324269 78324646 + 3 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -79262 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 339-247 chr2 34340851 34341060 + 3 NA Intergenic L1MB5|LINE|L1 273729 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 290-241 chr20 20189322 20189473 + 3 NA intron (NM_015585, intron 14 of 26) Charlie1a|DNA|hAT-Charlie 132751 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 1006-19 chr3 68464982 68465400 + 3 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) -35446 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 346-111 chr12 118910022 118910233 + 3 NA Intergenic AluJr4|SINE|Alu -71414 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 516-78 chr15 24990754 24990950 + 3 NA intron (NR_146177, intron 15 of 147) intron (NR_146177, intron 15 of 147) 3927 NR_001292 338427 NR_001292 ENSG00000239014 SNORD108 HBII-437 small nucleolar RNA, C/D box 108 snoRNA 651-112 chr7 114458031 114458433 + 3 NA intron (NR_033767, intron 2 of 17) intron (NR_033767, intron 2 of 17) 31730 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 521-159 chr3 36796485 36796794 + 3 NA Intergenic Intergenic 25861 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 414-111 chr16 77106920 77107182 + 3 NA Intergenic L2|LINE|L2 -84139 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 569-65 chr15 98828841 98829091 + 3 NA intron (NM_000875, intron 2 of 20) MamRep434|DNA|TcMar-Tigger 44540 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 810-47 chr6 40112954 40113396 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -178713 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 308-29 chr1 162562847 162563020 + 3 NA intron (NM_001324113, intron 2 of 10) intron (NM_001324113, intron 2 of 10) 1034 NM_001324113 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 1080-22 chr5 125087103 125087681 + 3 NA intron (NR_109882, intron 2 of 5) L2a|LINE|L2 50561 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 405-216 chr3 197360311 197360475 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -61072 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 539-91 chr17 55965122 55965387 + 3 NA Intergenic Intergenic -188221 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 359-404 chr5 102627963 102628109 + 3 NA intron (NR_103755, intron 1 of 2) LTR81B|LTR|Gypsy 43428 NR_103754 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 294-308 chr3 119615149 119615302 + 3 NA intron (NM_015900, intron 5 of 10) intron (NM_015900, intron 5 of 10) 14954 NM_001293225 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 549-45 chr12 60402244 60402590 + 3 NA Intergenic Intergenic 713047 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 251-111 chr15 60450016 60450190 + 3 NA TTS (NM_001276385) TTS (NM_001276385) 29039 NM_001276385 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 485-193 chr3 187207270 187207496 + 3 NA non-coding (NR_110052, exon 1 of 5) non-coding (NR_110052, exon 1 of 5) 246 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 859-36 chr6 40230511 40230950 + 3 NA Intergenic MSTB1-int|LTR|ERVL-MaLR 125276 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 478-125 chr19 27394279 27394539 + 3 NA Intergenic ALR/Alpha|Satellite|centr -399022 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 524-241 chr7 91471945 91472326 + 3 NA Intergenic Intergenic 207702 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 511-212 chr5 123145303 123145627 + 3 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -55149 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 405-306 chr7 97807410 97807644 + 3 NA Intergenic L1MA4A|LINE|L1 64638 NM_001178077 440 Hs.489207 NM_001673 ENSG00000070669 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 549-40 chr12 9221757 9221974 + 3 NA Intergenic Intergenic 12342 NR_040112 3 Hs.569125 NR_040112 ENSG00000256069 A2MP1 A2MP alpha-2-macroglobulin pseudogene 1 pseudo 582-80 chr2 180337894 180338149 + 3 NA Intergenic MER61-int|LTR|ERV1 -330724 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 563-132 chr4 3877413 3877729 + 3 NA Intergenic HAL1|LINE|L1 77857 NR_130742 348926 Hs.591720 NR_024253 ENSG00000251669 FAM86EP - family with sequence similarity 86, member A pseudogene pseudo 673-78 chr3 88520246 88520658 + 3 NA Intergenic L1PA8A|LINE|L1 181996 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 325-368 chr3 178275016 178275174 + 3 NA Intergenic L2c|LINE|L2 -144106 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 607-116 chr5 21858267 21858709 + 3 NA intron (NM_004061, intron 6 of 14) intron (NM_004061, intron 6 of 14) -25966 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 439-256 chr7 4530330 4530507 + 3 NA Intergenic L1MB4|LINE|L1 -151877 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 489-90 chr15 59795720 59795999 + 3 NA Intergenic Intergenic -106539 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 705-29 chr14 84394495 84394858 + 3 NA Intergenic Intergenic -877256 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 394-193 chr2 186093168 186093414 + 3 NA Intergenic Intergenic -6974 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 829-46 chr8 114890673 114891280 + 3 NA Intergenic L1PREC2|LINE|L1 777037 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 429-224 chr5 16188865 16189162 + 3 NA Intergenic Intergenic 8772 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 520-291 chr8 71442951 71443212 + 3 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -81012 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 545-60 chr12 128490459 128490728 + 3 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 196501 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 511-264 chr8 110367542 110367792 + 3 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -391896 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 480-134 chr19 58260888 58261099 + 3 NA exon (NM_001320767, exon 7 of 7) exon (NM_001320767, exon 7 of 7) -17962 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 1837-2 chr19 12044256 12045200 + 3 NA exon (NM_001080404, exon 4 of 4) exon (NM_001080404, exon 4 of 4) 8233 NM_001080404 729747 Hs.704229 NM_001080404 ENSG00000257446 ZNF878 - zinc finger protein 878 protein-coding 515-131 chr2 184873646 184874046 + 3 NA intron (NM_194250, intron 2 of 3) L1M5|LINE|L1 275317 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 627-105 chr6 152925790 152926050 + 3 NA Intergenic Intergenic 57121 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 358-293 chr3 63174811 63174936 + 3 NA Intergenic L1M4c|LINE|L1 72185 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 527-2 chr1 50098464 50098674 + 3 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) -5340 NM_001144776 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 555-69 chr17 51864270 51864503 + 3 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 294328 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 359-296 chr21 30016095 30016261 + 3 NA Intergenic Intergenic -76126 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 513-6 chr1 75411776 75412003 + 3 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 199225 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 220-365 chr8 82074217 82074297 + 3 NA Intergenic Intergenic -231971 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 457-86 chr16 79741945 79742192 + 3 NA intron (NR_104663, intron 4 of 5) L1MB7|LINE|L1 -28403 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 232-100 chr14 64529058 64529149 + 3 NA intron (NM_014950, intron 2 of 2) intron (NM_014950, intron 2 of 2) 11265 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 400-311 chr6 131453147 131453391 + 3 NA Intergenic L1MD|LINE|L1 -119957 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 238-127 chr16 48716480 48716597 + 3 NA Intergenic L2a|LINE|L2 -106358 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 933-43 chr8 138532614 138533201 + 3 NA Intergenic LTR106_Mam|LTR|LTR -35177 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 370-217 chr2 15656691 15656854 + 3 NA Intergenic Intergenic -34010 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 971-20 chrX 39390119 39390672 + 3 NA intron (NR_110385, intron 1 of 5) Mam_R4|LINE|Dong-R4 1379 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 500-20 chr1 234667243 234667561 + 3 NA Intergenic Intergenic 21113 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 859-21 chr2 42467084 42467451 + 3 NA intron (NM_172344, intron 1 of 1) L1M5|LINE|L1 26715 NM_133329 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 368-53 chr10 49219165 49219375 + 3 NA Intergenic L2|LINE|L2 -30879 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 516-21 chr10 43894288 43894627 + 3 NA intron (NR_038268, intron 4 of 4) MLT2A2|LTR|ERVL -14839 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 376-162 chr19 34811624 34811810 + 3 NA Intergenic L1M5|LINE|L1 21152 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 552-108 chr2 102759483 102759797 + 3 NA intron (NM_001321344, intron 2 of 5) MLT1D|LTR|ERVL-MaLR -2391 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 782-11 chr11 81481019 81481525 + 3 NA Intergenic L2a|LINE|L2 409564 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 653-65 chr2 48775928 48776261 + 3 NA intron (NM_001198593, intron 10 of 10) intron (NM_001198593, intron 10 of 10) -20370 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 613-140 chr8 125022393 125022695 + 3 NA TTS (NM_003129) TTS (NM_003129) 24039 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 388-114 chr14 79348033 79348299 + 3 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 68786 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 758-62 chr5 6034119 6034619 + 3 NA Intergenic MIRb|SINE|MIR 302923 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 510-177 chr21 35479667 35479872 + 3 NA intron (NR_073512, intron 1 of 2) L1MEd|LINE|L1 100995 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 449-47 chr11 107083491 107083710 + 3 NA Intergenic L1ME1|LINE|L1 -65124 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 543-108 chr18 75583245 75583606 + 3 NA Intergenic Intergenic 128978 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 525-150 chr22 27000830 27001049 + 3 NA Intergenic Intergenic 59579 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 833-10 chr18 2039898 2040469 + 3 NA Intergenic L1MD2|LINE|L1 531322 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 503-312 chrX 42515143 42515472 + 3 NA Intergenic L1MEg|LINE|L1 262856 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 318-398 chr4 58086925 58087064 + 3 NA Intergenic Intergenic 449334 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 601-29 chr12 46328832 46329112 + 3 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat 43801 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 543-101 chr17 70695614 70695935 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 506405 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 605-19 chr11 80548234 80548446 + 3 NA Intergenic AluSg|SINE|Alu 214463 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 680-81 chr3 10908704 10909063 + 3 NA intron (NM_014229, intron 6 of 13) MLT1K|LTR|ERVL-MaLR -83851 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 454 chr1 14842153 14842398 + 3 NA intron (NM_201628, intron 1 of 14) L2a|LINE|L2 -81854 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 535-35 chr10 131303596 131303857 + 3 NA intron (NM_174937, intron 3 of 11) intron (NM_174937, intron 3 of 11) 7995 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 313-395 chr4 92069147 92069374 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 208042 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 248-435 chr9 102092878 102093047 + 3 NA Intergenic L1MCa|LINE|L1 -354382 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 261-75 chr12 14747921 14748013 + 3 NA Intergenic HAL1|LINE|L1 23164 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 296-503 chrX 62829265 62829474 + 3 NA Intergenic L2|LINE|L2 521963 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 539-102 chr2 6848375 6848661 + 3 NA non-coding (NR_046236, exon 5 of 5) non-coding (NR_046236, exon 5 of 5) -8054 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 315-51 chr10 47014726 47014876 + 3 NA Intergenic Intergenic 103079 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 230-52 chr10 125568812 125568897 + 3 NA Intergenic L2a|LINE|L2 -5517 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 283-363 chr5 62269748 62269908 + 3 NA Intergenic Intergenic -36334 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 361-96 chr12 21176923 21177075 + 3 NA intron (NM_006446, intron 5 of 14) intron (NM_006446, intron 5 of 14) 45805 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 710-40 chr2 4207732 4208058 + 3 NA Intergenic L1MD|LINE|L1 233734 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 1212-13 chr8 79576181 79576713 + 3 NA Intergenic Intergenic -34670 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 943-23 chr6 145158029 145158680 + 3 NA Intergenic Intergenic 528523 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 512-157 chr22 27641693 27642036 + 3 NA Intergenic Intergenic 159892 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 824-24 chr2 171098233 171098764 + 3 NA intron (NM_012290, intron 2 of 20) L1MB7|LINE|L1 -31525 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 331-429 chr5 108650852 108651034 + 3 NA Intergenic HAL1ME|LINE|L1 77318 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 403-233 chr4 182027049 182027347 + 3 NA Intergenic L1MA2|LINE|L1 117317 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 841-27 chr4 44078852 44079192 + 3 NA Intergenic Intergenic 61960 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 437-173 chr3 68647429 68647728 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 146941 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 780-6 chr10 11639272 11639679 + 3 NA Intergenic Intergenic -27686 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 235-387 chr9 68486500 68486620 + 3 NA intron (NM_021965, intron 9 of 10) L1MB8|LINE|L1 54307 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 595-2 chr1 49470075 49470368 + 3 NA intron (NR_046839, intron 1 of 3) intron (NR_046839, intron 1 of 3) 1864 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 628-106 chr5 83239229 83239547 + 3 NA intron (NM_001318012, intron 6 of 7) L2c|LINE|L2 161841 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 726-34 chr18 54335873 54336206 + 3 NA intron (NM_001371102, intron 3 of 5) intron (NM_001371102, intron 3 of 5) 18534 NR_138549 147323 Hs.438779 NM_139171 ENSG00000174448 STARD6 - StAR related lipid transfer domain containing 6 protein-coding 872-41 chr6 20329979 20330461 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -71659 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 275-302 chr5 150473950 150474137 + 3 NA Intergenic MIRb|SINE|MIR 11949 NR_105061 102546298 Hs.570892 NR_105061 ENSG00000254333 NDST1-AS1 - NDST1 antisense RNA 1 ncRNA 539-24 chr10 51225306 51225502 + 3 NA intron (NM_001098512, intron 2 of 17) MLT1A0|LTR|ERVL-MaLR -74169 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 859-29 chr4 45988761 45989152 + 3 NA Intergenic MER67C|LTR|ERV1 135098 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 645-97 chr5 32671469 32671712 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -19282 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 550-133 chr20 42242053 42242347 + 3 NA intron (NM_133170, intron 15 of 31) intron (NM_133170, intron 15 of 31) -443283 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 448-8 chr1 97041491 97041735 + 3 NA Intergenic L1PA15|LINE|L1 -54310 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 750-5 chr1 226422041 226422350 + 3 NA Intergenic L1ME3D|LINE|L1 -14102 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 1281 chr1 180378304 180378892 + 3 NA intron (NM_032360, intron 6 of 7) L1MC4a|LINE|L1 59792 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 513-252 chr6 124785790 124786067 + 3 NA intron (NM_001040214, intron 4 of 6) L1MDa|LINE|L1 -176617 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 459-172 chr22 43691582 43691778 + 3 NA intron (NM_198856, intron 8 of 29) intron (NM_198856, intron 8 of 29) 120625 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 521-196 chr5 67337372 67337595 + 3 NA Intergenic Intergenic -140684 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 580-124 chr3 168326745 168327146 + 3 NA intron (NR_021485, intron 3 of 15) MER77B|LTR|ERVL 77423 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 552-2 chr1 29566354 29566645 + 3 NA Intergenic PABL_B-int|LTR|ERV1 -216385 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 445-83 chr15 96209685 96209871 + 3 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -81937 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 530-132 chr2 106836206 106836383 + 3 NA intron (NR_136313, intron 1 of 4) Charlie1a|DNA|hAT-Charlie 49734 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 1394-3 chr6 60714169 60714863 + 3 NA Intergenic Intergenic -859614 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 663-13 chr10 125311641 125312109 + 3 NA Intergenic L1PA16|LINE|L1 -150845 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 420-315 chrX 72568248 72568464 + 3 NA intron (NM_001166422, intron 3 of 4) MIR3|SINE|MIR 4487 NM_001166418 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 838-43 chr9 72921378 72921827 + 3 NA intron (NM_000689, intron 7 of 12) L1HS|LINE|L1 31451 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 547-82 chr18 2887620 2887972 + 3 NA intron (NM_032048, intron 3 of 7) L1ME4a|LINE|L1 40790 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 502-141 chr2 81894567 81895000 + 3 NA Intergenic Intergenic -427837 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 489-210 chr5 129431108 129431311 + 3 NA Intergenic Intergenic -29089 NM_133638 171019 Hs.23751 NM_133638 ENSG00000145808 ADAMTS19 - ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding 1344-5 chr5 118623790 118624637 + 3 NA intron (NR_104998, intron 4 of 4) intron (NR_104998, intron 4 of 4) 28025 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 378-106 chr12 65259962 65260170 + 3 NA Intergenic L1MB8|LINE|L1 -18617 NM_001031679 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 317-392 chr5 89032216 89032419 + 3 NA TTS (NR_109941) TTS (NR_109941) -128212 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 700-67 chr3 183597832 183598233 + 3 NA Intergenic L1MEc|LINE|L1 -37591 NM_001349417 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 401-332 chr8 131349864 131350022 + 3 NA Intergenic Intergenic -309034 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 471-252 chr7 52661076 52661395 + 3 NA Intergenic L1M4|LINE|L1 -374398 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 690-32 chr14 30069995 30070287 + 3 NA Intergenic Kanga1b|DNA|TcMar-Tc2 -142294 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 511-75 chr15 69067991 69068283 + 3 NA Intergenic L2c|LINE|L2 -12713 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 801-10 chr12 133193138 133193616 + 3 NA intron (NM_001165885, intron 4 of 4) MLT1A1|LTR|ERVL-MaLR 11882 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 522-67 chr12 103500344 103500644 + 3 NA Intergenic Intergenic 4454 NR_135004 105369945 Hs.742785 NR_135004 LOC105369945 - uncharacterized LOC105369945 ncRNA 636-46 chr14 69843849 69844185 + 3 NA Intergenic Intergenic 32257 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 322-457 chr6 55731628 55731840 + 3 NA Intergenic Intergenic 143856 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 487-271 chr7 47705388 47705556 + 3 NA Intergenic Intergenic 50228 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 570-105 chr2 49290632 49290942 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -136260 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 510-258 chr7 34787814 34788181 + 3 NA intron (NM_207172, intron 3 of 8) Tigger1|DNA|TcMar-Tigger -29725 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 354-244 chr2 193416991 193417158 + 3 NA Intergenic L1M2|LINE|L1 667229 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 412-333 chr8 122133947 122134116 + 3 NA Intergenic Intergenic 434613 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 684-11 chr1 217377393 217377740 + 3 NA Intergenic L2|LINE|L2 -239864 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 442-164 chr20_KI270871v1_alt 26907 27154 + 3 NA intron (NM_172109, intron 4 of 6) HERVIP10FH-int|LTR|ERV1 6209 NM_172109 3785 Hs.161851 NM_004518 ENSG00000075043 KCNQ2 BFNC|EBN|EBN1|ENB1|HNSPC|KCNA11|KV7.2 potassium voltage-gated channel subfamily Q member 2 protein-coding 403-341 chrX 141393793 141393949 + 3 NA Intergenic L1ME1|LINE|L1 -108978 NR_037183 619455 Hs.590784 NR_037183 ENSG00000277215 SPANXA2-OT1 CXorf18 SPANXA2 overlapping transcript 1 ncRNA 230-150 chr17 80652324 80652403 + 3 NA intron (NM_020761, intron 3 of 33) L1MB5|LINE|L1 107525 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 454-167 chr2 122333006 122333194 + 3 NA Intergenic Intergenic 577449 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 621-101 chr5 133529848 133530243 + 3 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 82496 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 523-159 chr21 15161178 15161402 + 3 NA Intergenic Intergenic -96290 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 1096-3 chr10 72982974 72983621 + 3 NA Intergenic L1M4|LINE|L1 -28491 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 593-119 chr6 26621962 26622178 + 3 NA Intergenic L1M4|LINE|L1 25117 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 192-225 chrM 14452 14523 + 3 NA Intergenic Intergenic -6973 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 466-65 chr12 82397936 82398221 + 3 NA intron (NR_144942, intron 3 of 10) L1ME1|LINE|L1 -39273 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 557-80 chr18 74447036 74447228 + 3 NA exon (NM_001044369, exon 2 of 4) exon (NM_001044369, exon 2 of 4) 10136 NM_001044369 125704 Hs.371690 NM_001044369 ENSG00000187773 DIPK1C C18orf51|FAM69C divergent protein kinase domain 1C protein-coding 833-39 chr8 79325098 79325519 + 3 NA Intergenic Intergenic -6880 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 819-13 chr18 1184021 1184446 + 3 NA Intergenic Intergenic 175396 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 405-141 chr2 75888136 75888382 + 3 NA Intergenic Intergenic -177344 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 426-101 chr16 79076163 79076427 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 524442 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 527-216 chr5 146663242 146663576 + 3 NA intron (NM_181678, intron 6 of 10) L1ME3G|LINE|L1 -147296 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 523-228 chr5 133218667 133218915 + 3 NA intron (NM_015082, intron 12 of 15) L2a|LINE|L2 166778 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 903-32 chr6 157506302 157506890 + 3 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) -22536 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 1310-3 chr2 34458750 34459502 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -218431 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 338-69 chr10 76625902 76626055 + 3 NA Intergenic Intergenic -262066 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 450-61 chr12 10098079 10098365 + 3 NA intron (NM_001297750, intron 1 of 6) intron (NM_001297750, intron 1 of 6) 763 NM_001297749 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 464-118 chr2 63302457 63302643 + 3 NA intron (NR_148704, intron 14 of 18) HUERS-P3b-int|LTR|ERV1 135457 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 393-263 chr5 9406288 9406510 + 3 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -104934 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 1304-4 chr4 255308 256083 + 3 NA non-coding (NR_027481, exon 2 of 2) non-coding (NR_027481, exon 2 of 2) 43095 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 527-85 chr14 56770127 56770355 + 3 NA Intergenic MLT1O|LTR|ERVL-MaLR 35426 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 239-294 chr4 185880226 185880332 + 3 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -68023 NM_001145670 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 503-241 chr6 8297223 8297566 + 3 NA Intergenic Intergenic 138151 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 1126-13 chr7 57890545 57891219 + 3 NA Intergenic ALR/Alpha|Satellite|centr 440705 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 303-65 chr11 37128246 37128431 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -530059 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 399-226 chr4 42850860 42851078 + 3 NA Intergenic AluJb|SINE|Alu -42297 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 639-89 chr4 59113988 59114315 + 3 NA Intergenic L1MD3|LINE|L1 100578 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 898-32 chr6 40459235 40459629 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 81095 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 524-287 chrX 62924265 62924487 + 3 NA Intergenic L1PA10|LINE|L1 426956 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 550-85 chr17 13848309 13848692 + 3 NA Intergenic L1ME3A|LINE|L1 -175998 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 710-27 chr13 96806543 96806948 + 3 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 177427 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 1315-5 chr7 47962228 47962927 + 3 NA TTS (NM_001363683) TTS (NM_001363683) -14086 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 582-113 chr4 71389854 71390208 + 3 NA intron (NM_003759, intron 3 of 22) intron (NM_003759, intron 3 of 22) 50978 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 254-122 chr14 86301379 86301540 + 3 NA Intergenic HAL1ME|LINE|L1 366781 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 988-16 chr2 116366427 116366836 + 3 NA Intergenic Intergenic 1022816 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 904-35 chr6 49882165 49882622 + 3 NA Intergenic L1MA3|LINE|L1 -5297 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 460-299 chr8 134621478 134621660 + 3 NA intron (NM_020863, intron 3 of 15) intron (NM_020863, intron 3 of 15) 23498 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 370-443 chr8 103531233 103531451 + 3 NA intron (NM_001348497, intron 1 of 22) L1MEg|LINE|L1 -29432 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 546-141 chr3 28112775 28113083 + 3 NA Intergenic LTR78|LTR|ERV1 -128690 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 605-54 chr2 137573406 137573756 + 3 NA intron (NM_001316349, intron 17 of 27) intron (NM_001316349, intron 17 of 27) 354351 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 148-78 chr6 56092441 56092520 + 3 NA promoter-TSS (NM_001318753) promoter-TSS (NM_001318753) -818 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 1038-12 chr3 4195167 4195730 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X -107856 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 864-52 chr8 139069544 139070138 + 3 NA Intergenic Intergenic -155800 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 464-70 chr14 81245536 81245789 + 3 NA Intergenic L1MA5A|LINE|L1 -24272 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 586-27 chr11 25021711 25021957 + 3 NA intron (NM_001009909, intron 9 of 11) intron (NM_001009909, intron 9 of 11) 524781 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 824-49 chr8 84629498 84629903 + 3 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -76227 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 441-123 chr2 51876926 51877116 + 3 NA intron (NR_135237, intron 7 of 10) L1MA2|LINE|L1 -493627 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 727-34 chr14 81878073 81878484 + 3 NA Intergenic L1MCa|LINE|L1 -135140 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 872-22 chr17 61565330 61565927 + 3 NA Intergenic L1PA8|LINE|L1 25591 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 369-233 chr2 233746551 233746743 + 3 NA intron (NM_019093, intron 1 of 4) L2c|LINE|L2 -2649 NM_001001394 414061 Hs.725533 NM_001001394 DNAJB3 HCG3 DnaJ heat shock protein family (Hsp40) member B3 protein-coding 659-91 chr5 96389417 96389719 + 3 NA TTS (NM_000439) TTS (NM_000439) 42591 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 461-104 chr17 32985583 32985758 + 3 NA Intergenic Intergenic -6177 NM_001317226 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 267-226 chr20 31856286 31856424 + 3 NA intron (NM_001320479, intron 6 of 9) intron (NM_001320479, intron 6 of 9) -10751 NM_004118 2307 Hs.516971 NM_004118 ENSG00000179772 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 497-153 chr20 18331543 18331843 + 3 NA Intergenic L1MA9|LINE|L1 43166 NM_001352462 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 1073-7 chr2 79057601 79058106 + 3 NA Intergenic L1MC4a|LINE|L1 30140 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 658-89 chr4 55052601 55052879 + 3 NA Intergenic Intergenic 72855 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 421-92 chr15 81546686 81546876 + 3 NA Intergenic Intergenic -172568 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 413-331 chrX 36028497 36028667 + 3 NA intron (NM_001304548, intron 22 of 63) L1PB4|LINE|L1 108848 NM_001304548 286464 Hs.376425 NM_152632 ENSG00000165164 CFAP47 CHDC2|CXorf22|CXorf30|CXorf59 cilia and flagella associated protein 47 protein-coding 396-351 chr8 79010582 79010821 + 3 NA Intergenic L1M1|LINE|L1 173172 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 604-56 chr16 19387168 19387470 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR -23220 NM_001308161 79838 Hs.115838 NM_024780 ENSG00000103534 TMC5 - transmembrane channel like 5 protein-coding 451-258 chrX 64778182 64778414 + 3 NA Intergenic L1MA4A|LINE|L1 198152 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 425-88 chr14 70334974 70335285 + 3 NA intron (NM_001202549, intron 3 of 4) L1M1|LINE|L1 24554 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 505-219 chr4 78198465 78198670 + 3 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) -90418 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 308-83 chr11 41227944 41228141 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 231594 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 527-91 chr14 68646232 68646517 + 3 NA intron (NM_001321818, intron 10 of 10) L1ME4a|LINE|L1 -17587 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 799-39 chr3 120153898 120154422 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -59713 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 486-297 chr8 118776742 118776933 + 3 NA Intergenic Intergenic -154874 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 735-65 chr4 76421785 76422165 + 3 NA Intergenic Intergenic -13254 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 1064 chr1 57640443 57641024 + 3 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -215812 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 863-34 chr5 31292340 31292792 + 3 NA intron (NM_001362435, intron 2 of 10) intron (NM_001362435, intron 2 of 10) 98880 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 275-115 chr14 71766860 71767032 + 3 NA Intergenic L1MEg2|LINE|L1 -165225 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 720-13 chr10 113427226 113427585 + 3 NA Intergenic Intergenic -123426 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 254-354 chr6 114097945 114098037 + 3 NA intron (NR_125845, intron 5 of 9) intron (NR_125845, intron 5 of 9) -35114 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 493-322 chrX 98438873 98439158 + 3 NA Intergenic Intergenic -874480 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 1032-18 chr5 163076063 163076503 + 3 NA Intergenic L1MEf|LINE|L1 -361288 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 999-11 chr5 114220702 114221190 + 3 NA Intergenic L1MEi|LINE|L1 -141124 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 1198 chr1 60583725 60584395 + 3 NA intron (NR_146508, intron 4 of 7) L1MEd|LINE|L1 38625 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 522-90 chr15 26429949 26430172 + 3 NA Intergenic L1MD2|LINE|L1 199030 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 271-9 chr1 78860728 78860846 + 3 NA Intergenic L1MC3|LINE|L1 145943 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 431-294 chr8 88618496 88618664 + 3 NA Intergenic L1M4|LINE|L1 -291097 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 503-57 chr11 83357408 83357633 + 3 NA Intergenic Intergenic -71113 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 396-384 chrX 94288304 94288488 + 3 NA Intergenic Intergenic 614190 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 952-29 chr8 134767782 134768421 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 32506 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 458-175 chr3 115518644 115518951 + 3 NA Intergenic Intergenic -104713 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 590-185 chrX 137738560 137738867 + 3 NA Intergenic L1MA4A|LINE|L1 172586 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 354-256 chr20 13794024 13794207 + 3 NA intron (NM_001039375, intron 4 of 9) L1M4|LINE|L1 9087 NR_147978 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 548-113 chr2 54861396 54861628 + 3 NA intron (NM_001039753, intron 11 of 40) L1M3de|LINE|L1 136500 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 458-197 chr4 187049822 187050037 + 3 NA Intergenic Intergenic -152057 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 457-80 chr16 31918286 31918489 + 3 NA Intergenic Intergenic 44580 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 1014-16 chr21 30969282 30969941 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 68865 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 411-156 chr2 117737981 117738185 + 3 NA Intergenic Intergenic -76608 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 724-68 chr5 24008129 24008617 + 3 NA intron (NR_131245, intron 4 of 4) L1PA15|LINE|L1 57025 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 535-84 chr15 27654626 27654976 + 3 NA Intergenic L1M2|LINE|L1 444514 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 215-180 chr21 27660165 27660286 + 3 NA Intergenic Intergenic -62154 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 543-146 chr20 13632179 13632601 + 3 NA intron (NM_017714, intron 1 of 13) AluSg|SINE|Alu 6542 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 292-364 chr5 152682118 152682296 + 3 NA intron (NR_109877, intron 4 of 4) L1MB7|LINE|L1 -276928 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 856-51 chr8 136907571 136908096 + 3 NA Intergenic MER41-int|LTR|ERV1 377035 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 417-26 chr10 28944594 28944757 + 3 NA Intergenic L1MD2|LINE|L1 98267 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 278-205 chr2 40769934 40770045 + 3 NA Intergenic L1MA7|LINE|L1 -257554 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 416-226 chr3 102883840 102883991 + 3 NA Intergenic Intergenic 448900 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 462-161 chr21 27046160 27046324 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -79154 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 542-228 chr8 119976193 119976463 + 3 NA intron (NM_022783, intron 4 of 8) L2a|LINE|L2 102606 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 666-59 chr2 123576737 123577143 + 3 NA Intergenic Intergenic 448234 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1029-14 chr5 153015591 153016355 + 3 NA Intergenic L1M4c|LINE|L1 -43624 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 461-16 chr1 177227655 177227832 + 3 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 56785 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 988-27 chr5 13069310 13069930 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -36734 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 596-117 chr22 32027088 32027353 + 3 NA intron (NR_149128, intron 4 of 4) L1MB3|LINE|L1 -16041 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 302-231 chr2 144124180 144124351 + 3 NA intron (NM_001354355, intron 7 of 13) MIRb|SINE|MIR 87314 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 380-427 chrX 79591389 79591554 + 3 NA Intergenic L1M4|LINE|L1 -223919 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 740-67 chr6 130995325 130995609 + 3 NA intron (NM_001135554, intron 1 of 14) AluJo|SINE|Alu 5300 NM_001252660 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 752-21 chr15 67544180 67544556 + 3 NA intron (NM_002757, intron 1 of 20) intron (NM_002757, intron 1 of 20) 1665 NM_002757 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 954-16 chr18 3203911 3204314 + 3 NA intron (NM_019856, intron 2 of 36) L1M4a2|LINE|L1 15856 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 673-111 chr7 77493859 77494230 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -43251 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 494-74 chr14 82625287 82625487 + 3 NA Intergenic Intergenic -17245 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 435-161 chr3 168733987 168734312 + 3 NA intron (NR_021485, intron 6 of 15) L1MA4|LINE|L1 -167796 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 484-66 chr14 77938318 77938502 + 3 NA Intergenic Intergenic 138301 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 730-83 chr8 138092127 138092525 + 3 NA Intergenic L1MA4|LINE|L1 -8781 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 584-113 chr4 44351821 44352167 + 3 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 96815 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 478-150 chr2 166746691 166746971 + 3 NA Intergenic Intergenic -141656 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 747-72 chr9 25186419 25186889 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 492204 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 222-72 chr11 88717450 88717525 + 3 NA intron (NM_001143831, intron 2 of 8) MIRb|SINE|MIR 212911 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 690-56 chr2 62387167 62387526 + 3 NA Intergenic MER34C2|LTR|ERV1 118849 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 568-144 chr4 30870956 30871298 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 150758 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 591-17 chr10 108297718 108297994 + 3 NA Intergenic Intergenic -228563 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 693-13 chr10 25352633 25353208 + 3 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -176644 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 473-228 chr5 130425948 130426153 + 3 NA Intergenic Charlie6|DNA|hAT-Charlie 521585 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 677-61 chr4 67857533 67857873 + 3 NA intron (NM_004262, intron 2 of 9) L1MA4A|LINE|L1 26299 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 615-144 chr8 139300406 139300682 + 3 NA Intergenic L1MB3|LINE|L1 -386503 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 474-157 chr2 200104788 200105022 + 3 NA Intergenic AluSz6|SINE|Alu -149414 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 553-223 chr7 104358519 104358816 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 30011 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 785-58 chr8 87601475 87601860 + 3 NA Intergenic Intergenic 272348 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 731-60 chr5 133527256 133527620 + 3 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 85103 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 376-393 chr8 39053822 39053970 + 3 NA intron (NR_027638, intron 12 of 20) MLT1A|LTR|ERVL-MaLR -35211 NR_145988 109616979 NR_145736 ENSG00000207199 SNORD38D - small nucleolar RNA, C/D box 38D snoRNA 448-120 chr2 133227579 133227757 + 3 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -38527 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 658-10 chr1 229051031 229051322 + 3 NA Intergenic L1PB1|LINE|L1 123625 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 563-106 chr20 21823128 21823364 + 3 NA Intergenic Intergenic 117582 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 277-63 chr10 106979165 106979283 + 3 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 185482 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 330-26 chr1 118764516 118764661 + 3 NA Intergenic L1MB1|LINE|L1 223755 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 499-128 chr2 123969496 123969797 + 3 NA Intergenic Intergenic 55528 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 537-53 chr12 54626382 54626619 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 8395 NM_033277 90070 Hs.307096 NM_033277 ENSG00000135413 LACRT - lacritin protein-coding 594-147 chr8 103968219 103968549 + 3 NA intron (NR_145711, intron 12 of 21) L1MC1|LINE|L1 149164 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 643-41 chr16 10049066 10049302 + 3 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 132883 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 1082-6 chr17 41141073 41141734 + 3 NA promoter-TSS (NM_030976) promoter-TSS (NM_030976) -916 NM_030976 81871 Hs.307014 NM_030976 ENSG00000198090 KRTAP4-6 KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 keratin associated protein 4-6 protein-coding 479-72 chr15 49560394 49560607 + 3 NA intron (NM_001330293, intron 8 of 10) L1PA16|LINE|L1 60318 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 569-4 chr1 65564726 65565095 + 3 NA intron (NM_001198687, intron 1 of 18) intron (NM_001198687, intron 1 of 18) 39221 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 436-134 chr2 76049942 76050127 + 3 NA Intergenic L1M3f|LINE|L1 -339119 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 323-326 chr3 60466106 60466349 + 3 NA intron (NM_001320900, intron 6 of 9) L1MA3|LINE|L1 151643 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 554-53 chr12 1904135 1904502 + 3 NA intron (NM_172364, intron 6 of 37).2 L1MA3|LINE|L1 14334 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 504-93 chr16 72530360 72530657 + 3 NA intron (NR_159372, intron 3 of 7) CR1-3_Croc|LINE|CR1 134462 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 688-4 chr1 81487435 81487904 + 3 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) 70033 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 605-130 chr9 86165214 86165568 + 3 NA Intergenic Intergenic 37851 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 876-17 chr16 83507238 83507708 + 3 NA promoter-TSS (NR_036147) promoter-TSS (NR_036147) -873 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 478-259 chr6 154066207 154066422 + 3 NA intron (NM_001285522, intron 1 of 1) L1MB3|LINE|L1 -20193 NM_001285526 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 556-161 chr4 92262453 92262734 + 3 NA TTS (NR_125920) TTS (NR_125920) 14709 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 482-69 chr13 37223120 37223296 + 3 NA Intergenic L1MC1|LINE|L1 -117544 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 873 chr1 180384936 180385393 + 3 NA intron (NM_032360, intron 6 of 7) L1MA4A|LINE|L1 53226 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 384-245 chr3 187127703 187127857 + 3 NA intron (NM_052969, intron 2 of 2) intron (NM_052969, intron 2 of 2) 11716 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 203-147 chr3 57043389 57043457 + 3 NA intron (NM_001128615, intron 1 of 12) intron (NM_001128615, intron 1 of 12) -17241 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 336-493 chr6 72878714 72878889 + 3 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 88952 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 439-286 chr8 91377670 91377881 + 3 NA intron (NM_134266, intron 15 of 18) L1PA17|LINE|L1 128456 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 542-43 chr12 15547439 15547703 + 3 NA intron (NM_030671, intron 1 of 13) intron (NM_030671, intron 1 of 13) 960 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 500-52 chr11 63101354 63101600 + 3 NA intron (NM_001136506, intron 5 of 9) intron (NM_001136506, intron 5 of 9) 42744 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 326-29 chr1 153264412 153264598 + 3 NA Intergenic L1MDa|LINE|L1 4818 NM_000427 4014 Hs.251680 NM_000427 ENSG00000203782 LOR - loricrin protein-coding 589-103 chr4 42694756 42695116 + 3 NA Intergenic Intergenic -37831 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 805-8 chr11 45709775 45710175 + 3 NA Intergenic Intergenic -12333 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 682-91 chr6 62142850 62143263 + 3 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 143169 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 468-234 chr4 164623642 164623944 + 3 NA Intergenic L1MA4A|LINE|L1 -130338 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 827-23 chr2 100523064 100523497 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -39713 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 545-172 chr5 6904713 6904961 + 3 NA Intergenic AluSz|SINE|Alu -76916 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 343-441 chr5 104027428 104027604 + 3 NA Intergenic MER52-int|LTR|ERV1 -464727 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 390-105 chr14 71868378 71868555 + 3 NA Intergenic LTR78B|LTR|ERV1 -63705 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 261-146 chr17 60778396 60778546 + 3 NA intron (NM_001330413, intron 6 of 25) intron (NM_001330413, intron 6 of 25) 100620 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 468-333 chr9 19467521 19467724 + 3 NA Intergenic Intergenic 58613 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 1813 chr1 34510926 34512085 + 3 NA Intergenic L1ME1|LINE|L1 158189 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 651-124 chr8 130951324 130951724 + 3 NA intron (NM_001115, intron 3 of 17) intron (NM_001115, intron 3 of 17) 89385 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 255-29 chr10 55317518 55317644 + 3 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -281461 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 545-47 chr11 98786275 98786502 + 3 NA Intergenic Intergenic -234561 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 280-217 chr2 150866636 150866803 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR 237822 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 595-49 chr14 56463883 56464238 + 3 NA Intergenic Intergenic -50271 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 372-174 chr16 54853901 54854058 + 3 NA Intergenic MIRc|SINE|MIR -5746 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 369-426 chr8 132287945 132288205 + 3 NA intron (NM_004519, intron 1 of 14) L1ME4c|LINE|L1 159187 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 532-190 chr4 95650062 95650363 + 3 NA Intergenic Intergenic -101239 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 470-170 chr3 37725080 37725264 + 3 NA intron (NM_002207, intron 18 of 27) intron (NM_002207, intron 18 of 27) 136608 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 497-253 chr7 395417 395711 + 3 NA Intergenic L1M4b|LINE|L1 16139 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 1169-2 chr10 5108484 5109077 + 3 NA Intergenic Intergenic 14366 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 326-321 chr3 1025171 1025387 + 3 NA Intergenic Intergenic -67745 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 581-151 chr6 126490510 126490871 + 3 NA Intergenic L1M3b|LINE|L1 6059 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 542-18 chr10 16667369 16667626 + 3 NA intron (NM_152724, intron 7 of 7) AluSz6|SINE|Alu -145618 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 488-46 chr11 41277491 41277695 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 182043 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 339-17 chr1 79150903 79151096 + 3 NA Intergenic Intergenic -144269 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 369-354 chr6 53631394 53631605 + 3 NA TTS (NR_125841) TTS (NR_125841) 3119 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 455-95 chr17 62126323 62126543 + 3 NA Intergenic Intergenic -61155 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 809-15 chr17 51982614 51982933 + 3 NA intron (NM_001082533, intron 3 of 9) L2c|LINE|L2 175941 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 751-46 chr3 129667362 129667646 + 3 NA intron (NM_015008, intron 2 of 3) intron (NM_015008, intron 2 of 3) 21228 NM_015008 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 364-443 chr8 81749746 81749923 + 3 NA intron (NM_152284, intron 1 of 4) THE1D-int|LTR|ERVL-MaLR 17386 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 370-231 chr2 61609048 61609183 + 3 NA Intergenic AluSz|SINE|Alu -70759 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 627-24 chr13 53978837 53979254 + 3 NA Intergenic L1MA4|LINE|L1 153826 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 628-75 chr2 133723545 133723776 + 3 NA Intergenic L1MB7|LINE|L1 -155197 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 668-52 chr2 106623174 106623553 + 3 NA Intergenic Intergenic 135999 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 614-117 chr7 14289836 14290278 + 3 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -298632 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 628-40 chr14 46616491 46616764 + 3 NA Intergenic L1MA9|LINE|L1 35154 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 269-306 chr5 28340135 28340291 + 3 NA Intergenic Intergenic -52548 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 570-10 chr1 118607707 118608035 + 3 NA Intergenic L1MA10|LINE|L1 380472 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 713-69 chr5 101062326 101062899 + 3 NA Intergenic L1M1|LINE|L1 -159330 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 265-144 chr17 58107193 58107327 + 3 NA Intergenic L1MD2|LINE|L1 23841 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 379-307 chr6 156099981 156100192 + 3 NA Intergenic Intergenic 153289 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 301-207 chr2 77341933 77342091 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 180364 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 477-138 chr2 16657865 16658146 + 3 NA intron (NM_030797, intron 1 of 11) intron (NM_030797, intron 1 of 11) 7829 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 531-186 chr4 172895359 172895647 + 3 NA intron (NM_001034845, intron 8 of 12) L1MA4|LINE|L1 -168625 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 390-339 chr6 138838179 138838422 + 3 NA intron (NM_001077706, intron 4 of 21) intron (NM_001077706, intron 4 of 21) 42189 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 149-66 chr3 37230682 37230742 + 3 NA Intergenic Intergenic -12559 NM_001172713 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 488-263 chr8 20416860 20417102 + 3 NA Intergenic Intergenic -113018 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 433-60 chr12 43484710 43484955 + 3 NA intron (NM_025003, intron 7 of 38) L1PB3|LINE|L1 67371 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 518-319 chr9 120634753 120635059 + 3 NA intron (NM_001080497, intron 2 of 5) L1MA5|LINE|L1 -54736 NM_001272039 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 299-193 chr2 16224161 16224272 + 3 NA Intergenic Intergenic 173789 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 1570 chr2 76179043 76179932 + 3 NA Intergenic L1M1|LINE|L1 -468572 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 445-15 chr1 237196272 237196537 + 3 NA intron (NM_001035, intron 1 of 104) MIRc|SINE|MIR 154220 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 448-297 chr9 35264212 35264498 + 3 NA intron (NM_006377, intron 7 of 38) MLT1A-int|LTR|ERVL-MaLR -77541 NM_001371188 549-223 chr9 105591905 105592109 + 3 NA intron (NM_001351502, intron 5 of 13) MSTA-int|LTR|ERVL-MaLR 33876 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 755-4 chr1 67972753 67973249 + 3 NA intron (NR_040077, intron 1 of 9) L1MA3|LINE|L1 78630 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 275-32 chr10 10773297 10773471 + 3 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 21530 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 439-299 chr9 10332722 10332976 + 3 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 280153 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 741-31 chr2 69971619 69971910 + 3 NA intron (NR_033872, intron 9 of 10) intron (NR_033872, intron 9 of 10) -9499 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 736-2 chr1 86129829 86130244 + 3 NA intron (NM_152890, intron 2 of 59) L1M8|LINE|L1 26435 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 695-39 chr17 51326186 51326621 + 3 NA intron (NR_110751, intron 3 of 5) HAL1M8|LINE|L1 8759 NR_110751 101927274 Hs.591168 NR_110751 ENSG00000249383 LINC02071 - long intergenic non-protein coding RNA 2071 ncRNA 591-149 chr6 91000810 91001233 + 3 NA Intergenic Intergenic -413949 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 446-28 chr1 224283623 224283858 + 3 NA intron (NM_002533, intron 15 of 22) intron (NM_002533, intron 15 of 22) -26630 NR_031574 100313769 NR_031574 ENSG00000221406 MIR320B2 MIR320B-2|MIRN320B2|mir-320b-2 microRNA 320b-2 ncRNA 462-266 chr7 54153493 54153670 + 3 NA Intergenic Intergenic -177116 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 420-112 chr18 65452338 65452506 + 3 NA Intergenic L1MEd|LINE|L1 -297830 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 521-111 chr19 24317378 24317698 + 3 NA Intergenic ALR/Alpha|Satellite|centr -154091 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 481-106 chr16 7879831 7880121 + 3 NA Intergenic Intergenic 547131 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 475-12 chr1 182901696 182902016 + 3 NA intron (NM_030933, intron 9 of 9) MER5A|DNA|hAT-Charlie 51310 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 454-91 chr14 68811093 68811267 + 3 NA Intergenic Intergenic -14937 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 807-38 chr3 69511059 69511625 + 3 NA Intergenic Intergenic -125254 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 546-163 chr4 30715897 30716245 + 3 NA Intergenic Intergenic -4298 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 455-37 chr10 107694319 107694513 + 3 NA Intergenic L3|LINE|CR1 374877 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 589-161 chr8 119545963 119546279 + 3 NA Intergenic MIRb|SINE|MIR 46887 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 301-56 chr11 8461625 8461791 + 3 NA intron (NM_001352388, intron 7 of 14) intron (NM_001352388, intron 7 of 14) 132268 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 604-180 chrX 80610282 80610593 + 3 NA Intergenic L1PA15|LINE|L1 189990 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 355-509 chr8 112685839 112686004 + 3 NA intron (NM_001363185, intron 12 of 66) intron (NM_001363185, intron 12 of 66) 42428 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 593-28 chr12 3356265 3356617 + 3 NA intron (NR_148995, intron 1 of 11) intron (NR_148995, intron 1 of 11) 9681 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 950-20 chr3 14221604 14222035 + 3 NA Intergenic L1MB5|LINE|L1 43002 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 535-236 chr8 40150572 40150907 + 3 NA Intergenic L2b|LINE|L2 -2743 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 606-53 chr14 60502864 60503192 + 3 NA Intergenic MER131|DNA?|DNA? -6118 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 763-22 chr16 64766361 64766727 + 3 NA Intergenic Intergenic 355519 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 374-325 chr5 154504308 154504519 + 3 NA Intergenic L1ME3G|LINE|L1 -26186 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 520-262 chr6 129194365 129194590 + 3 NA intron (NM_000426, intron 12 of 64) intron (NM_000426, intron 12 of 64) 311336 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 781-60 chr7 35560033 35560548 + 3 NA Intergenic AluSq2|SINE|Alu 134845 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 973-13 chr2 184155081 184155495 + 3 NA Intergenic Intergenic -223687 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 640-19 chr10 113208077 113208352 + 3 NA Intergenic L1M4|LINE|L1 78943 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 525-197 chr5 37869937 37870169 + 3 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 29615 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 499-24 chr10 32773005 32773248 + 3 NA intron (NM_001321115, intron 29 of 43) L1M3b|LINE|L1 128346 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 551-172 chr5 156519433 156519798 + 3 NA intron (NM_001128209, intron 3 of 7) L1PA6|LINE|L1 192451 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 403-193 chr3 33732834 33733021 + 3 NA Intergenic Intergenic -14673 NM_001365627 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 961-13 chr4 100082264 100082768 + 3 NA Intergenic L2c|LINE|L2 -107517 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 329-42 chr10 16248827 16248958 + 3 NA Intergenic L1PA16|LINE|L1 -188051 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 547-236 chr8 51715588 51715862 + 3 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 93720 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 534-252 chr8 63660823 63661121 + 3 NA Intergenic Intergenic -108458 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 783-10 chr1 248691148 248691579 + 3 NA Intergenic L2b|LINE|L2 -5699 NR_125950 101928226 NR_125950 LYPD9P - LY6/PLAUR domain containing 9, pseudogene pseudo 534-242 chr7 110553359 110553662 + 3 NA Intergenic Intergenic -537496 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 910-11 chr12 47336669 47337087 + 3 NA Intergenic L1MD1|LINE|L1 27391 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 590-36 chr12 118875720 118876047 + 3 NA Intergenic Intergenic -42347 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 535-141 chr2 189383508 189383756 + 3 NA Intergenic L1MA4|LINE|L1 -57801 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 597-134 chr8 135088943 135089325 + 3 NA Intergenic L2a|LINE|L2 -144997 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 544-189 chr5 156351374 156351593 + 3 NA intron (NM_001128209, intron 2 of 7) MIR|SINE|MIR 24319 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 522-219 chr6 40621772 40622054 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -34549 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 295-41 chr10 15546488 15546670 + 3 NA intron (NM_001291494, intron 26 of 28) MER20|DNA|hAT-Charlie 173343 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 574-162 chr7 35323897 35324188 + 3 NA intron (NR_038864, intron 1 of 2) L1MD|LINE|L1 10187 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 857-4 chr1 147302373 147302750 + 3 NA Intergenic L1MA8|LINE|L1 59419 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 457-54 chr12 129317948 129318126 + 3 NA intron (NM_133448, intron 4 of 8) L1PB4|LINE|L1 109436 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 390-49 chr10 117400887 117401066 + 3 NA Intergenic L1MB7|LINE|L1 -25536 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 771-27 chr14 81740767 81741108 + 3 NA intron (NR_146498, intron 1 of 2) MLT1A0|LTR|ERVL-MaLR 2201 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 846-23 chr2 131000827 131001227 + 3 NA intron (NM_001367493, intron 4 of 13) AluSz|SINE|Alu 92135 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 630-49 chr2 48801922 48802229 + 3 NA Intergenic Intergenic -46351 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 433-94 chr15 69544212 69544390 + 3 NA Intergenic Intergenic -17419 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 363-108 chr12 97439415 97439599 + 3 NA Intergenic L1M7|LINE|L1 -23269 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 527-36 chr10 78346690 78346941 + 3 NA Intergenic AluJb|SINE|Alu 79473 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 608-69 chr2 35256223 35256632 + 3 NA Intergenic L1MC4|LINE|L1 -214978 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 363-181 chr17 68684614 68684824 + 3 NA Intergenic Intergenic 56565 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 467-238 chr5 169850364 169850640 + 3 NA intron (NR_156756, intron 27 of 52) (GTGTAT)n|Simple_repeat|Simple_repeat 129993 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 452-199 chr4 135742321 135742534 + 3 NA Intergenic Intergenic 145666 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 625-86 chr5 123715427 123715803 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie 170198 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 534-111 chr2 52700344 52700538 + 3 NA Intergenic ORSL|DNA|hAT-Tip100 2174 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 397-237 chr4 174742293 174742475 + 3 NA intron (NM_006529, intron 3 of 9) intron (NM_006529, intron 3 of 9) 86863 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 711-75 chr9 93738355 93738879 + 3 NA Intergenic L1MCa|LINE|L1 -80740 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 483-256 chr8 50910286 50910472 + 3 NA Intergenic MER57A-int|LTR|ERV1 746248 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 534-95 chr18 38351139 38351453 + 3 NA Intergenic HERV16-int|LTR|ERVL 694161 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 632-102 chr5 160756921 160757155 + 3 NA intron (NM_001366652, intron 2 of 24) L1ME1|LINE|L1 -71647 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 614-69 chr20 47112297 47112609 + 3 NA intron (NM_172110, intron 9 of 13) intron (NM_172110, intron 9 of 13) -54514 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 517-214 chr5 42366353 42366626 + 3 NA Intergenic Intergenic -56950 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 440-21 chr10 29338378 29338641 + 3 NA Intergenic Intergenic 49439 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 505-61 chr12 60931104 60931481 + 3 NA Intergenic LTR103b_Mam|LTR|ERV1? 1241922 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 440-260 chr8 142905635 142905967 + 3 NA Intergenic HERVL74-int|LTR|ERVL 12042 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 635-40 chr17 73857631 73858053 + 3 NA Intergenic Intergenic -29305 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 544-72 chr14 96641823 96642083 + 3 NA Intergenic L1ME1|LINE|L1 -99238 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 521-98 chr16 47936464 47936761 + 3 NA Intergenic L1MC4|LINE|L1 -29077 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 532-152 chr22 48572834 48573097 + 3 NA intron (NM_001082967, intron 1 of 3) Charlie4a|DNA|hAT-Charlie -3375 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 1512-3 chr3 31468966 31469651 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -63617 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 917-5 chr12 61881164 61881822 + 3 NA intron (NM_178539, intron 1 of 4) Tigger3a|DNA|TcMar-Tigger 311346 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 390-335 chr6 126311208 126311385 + 3 NA Intergenic L1PA11|LINE|L1 -28493 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 954-7 chr11 91786526 91786911 + 3 NA Intergenic Intergenic -438316 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 407-235 chr5 2321224 2321393 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -9107 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 451-261 chrX 126756280 126756519 + 3 NA Intergenic Intergenic -63330 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 598-83 chr22 24815624 24815921 + 3 NA intron (NM_001098498, intron 2 of 23) LOR1a|LTR|ERV1 9551 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 379-11 chr1 83571569 83571802 + 3 NA Intergenic MER102c|DNA|hAT-Charlie 125631 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 391-164 chr2 34770142 34770356 + 3 NA Intergenic L1MA3|LINE|L1 92692 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 506-209 chr4 88183615 88183822 + 3 NA intron (NM_001257386, intron 1 of 15) L1MA4|LINE|L1 -24395 NM_001348989 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 853-32 chr6 40370112 40370801 + 3 NA Intergenic L1MA9|LINE|L1 -7881 NR_160958 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 413-119 chr18 6787336 6787539 + 3 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -47048 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 727-29 chr14 46800210 46800576 + 3 NA Intergenic L1MEb|LINE|L1 -148612 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 686-76 chr7 64622734 64623121 + 3 NA Intergenic AluSg|SINE|Alu 40317 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 477-284 chr8 109288374 109288595 + 3 NA intron (NM_032869, intron 5 of 9) intron (NM_032869, intron 5 of 9) 41449 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 400-274 chr5 20402185 20402342 + 3 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 96712 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 519-174 chr5 46066418 46066685 + 3 NA Intergenic ALR/Alpha|Satellite|centr -370171 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1673-2 chr5 113766237 113767298 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 253073 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 812-50 chr8 25714189 25714714 + 3 NA Intergenic Intergenic 255218 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 470-195 chr4 64501624 64501925 + 3 NA Intergenic Intergenic -92314 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 933-42 chr8 121222300 121222718 + 3 NA Intergenic Intergenic -410463 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 826-29 chr2 228929735 228930149 + 3 NA Intergenic L1MD|LINE|L1 302150 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 518-34 chr10 83577720 83578007 + 3 NA Intergenic L1PA16|LINE|L1 99226 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 529-84 chr17 33527218 33527532 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 6385 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 544-157 chr3 184932950 184933158 + 3 NA intron (NM_001009921, intron 33 of 46) MER5A|DNA|hAT-Charlie 120547 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 795-48 chr6 149198235 149198614 + 3 NA Intergenic MIR|SINE|MIR -19500 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 430-192 chr3 67289120 67289293 + 3 NA Intergenic L1MC3|LINE|L1 63742 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 465-58 chr12 28960289 28960518 + 3 NA Intergenic Intergenic -188875 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 948-8 chr12 14537483 14537886 + 3 NA intron (NM_024829, intron 4 of 10) intron (NM_024829, intron 4 of 10) -30048 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 619-62 chr18 5179441 5179774 + 3 NA intron (NM_001330553, intron 1 of 1) L1PB4|LINE|L1 17650 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 381-67 chr10 126114881 126115106 + 3 NA intron (NM_001288974, intron 6 of 18) intron (NM_001288974, intron 6 of 18) -141720 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 903-25 chr3 138544387 138544890 + 3 NA intron (NM_001288967, intron 2 of 13) L1MA4|LINE|L1 47318 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 820-48 chr5 55422546 55422988 + 3 NA intron (NM_015360, intron 25 of 26) intron (NM_015360, intron 25 of 26) 86159 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 439-234 chr5 99068624 99068807 + 3 NA Intergenic Intergenic -139001 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 519-118 chr2 145586654 145586984 + 3 NA Intergenic Intergenic 918852 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 435-45 chr11 19663986 19664223 + 3 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) -48733 NM_182964 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 479-84 chr17 73636843 73637170 + 3 NA intron (NM_001144952, intron 1 of 44) MIRb|SINE|MIR 7439 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 510-227 chr5 56681147 56681364 + 3 NA Intergenic Intergenic -74999 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 539-31 chr10 99335212 99335538 + 3 NA intron (NM_020348, intron 1 of 10) L2c|LINE|L2 6019 NM_020348 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 1028-2 chr10 75569625 75570217 + 3 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 17463 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 1125-18 chrX 67047320 67047879 + 3 NA Intergenic L3|LINE|CR1 -408301 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 483-57 chr13 81293421 81293686 + 3 NA Intergenic Intergenic -66570 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 552-128 chr22 49145854 49146149 + 3 NA Intergenic L1M5|LINE|L1 279231 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 468-245 chr5 41614473 41614651 + 3 NA Intergenic L2b|LINE|L2 -103961 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 366-422 chr7 117511964 117512145 + 3 NA intron (NM_000492, intron 3 of 26) intron (NM_000492, intron 3 of 26) 32091 NM_000492 1080 Hs.489786 NM_000492 ENSG00000001626 CFTR ABC35|ABCC7|CF|CFTR/MRP|MRP7|TNR-CFTR|dJ760C5.1 CF transmembrane conductance regulator protein-coding 284-19 chr1 159417216 159417323 + 3 NA intron (NM_001363558, intron 3 of 3) L1MA4A|LINE|L1 -14923 NR_145510 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 570-180 chr7 53546317 53546641 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 265452 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1164 chr1 171887761 171888318 + 3 NA intron (NM_001278252, intron 1 of 14) L3b|LINE|CR1 23847 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 423-63 chr12 112871614 112871841 + 3 NA intron (NM_001143854, intron 10 of 21) (ATATACA)n|Simple_repeat|Simple_repeat -35050 NM_002534 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 466-300 chrX 45704364 45704530 + 3 NA Intergenic Intergenic -26641 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 537-83 chr17 34505673 34506074 + 3 NA Intergenic L1ME1|LINE|L1 73496 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 870-9 chr15 93533749 93534205 + 3 NA Intergenic L1M5|LINE|L1 -322583 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 531-251 chr8 133993101 133993434 + 3 NA Intergenic MIRb|SINE|MIR 106771 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 596-107 chr2 217527906 217528118 + 3 NA intron (NR_026597, intron 2 of 12) intron (NR_026597, intron 2 of 12) 228581 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 681-34 chr19 34643468 34643795 + 3 NA intron (NR_027620, intron 1 of 3) L1MA4A|LINE|L1 -2242 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 345-269 chr2 101867667 101867805 + 3 NA intron (NM_145686, intron 19 of 30) intron (NM_145686, intron 19 of 30) -115729 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 689-14 chr10 78723483 78723868 + 3 NA Intergenic L1ME1|LINE|L1 343773 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 337-237 chr2 21883612 21883737 + 3 NA Intergenic Intergenic -173022 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 303-68 chr11 62033241 62033397 + 3 NA Intergenic Intergenic -65685 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 317-217 chr2 31713230 31713392 + 3 NA Intergenic L1M1|LINE|L1 90669 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 460-122 chr19 12530377 12530629 + 3 NA intron (NM_144976, intron 1 of 3) intron (NM_144976, intron 1 of 3) 20979 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 537-266 chr8 134361631 134361950 + 3 NA Intergenic Intergenic -236281 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 778-66 chr8 101799523 101799983 + 3 NA intron (NM_001040628, intron 4 of 7) L1MD1|LINE|L1 -8784 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 366-159 chr17 14355512 14355670 + 3 NA Intergenic Intergenic 51851 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 391-296 chr5 131765243 131765485 + 3 NA intron (NM_133372, intron 1 of 17) intron (NM_133372, intron 1 of 17) 31653 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 843-35 chr5 162272480 162272884 + 3 NA Intergenic LTR37A|LTR|ERV1 205040 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 281-317 chr4 65126226 65126441 + 3 NA Intergenic Intergenic -121833 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 328-390 chr4 32002325 32002466 + 3 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) 5016 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 280-28 chr1 192824619 192824796 + 3 NA Intergenic L1MDa|LINE|L1 15668 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 378-360 chr6 1570381 1570686 + 3 NA Intergenic L1M4b|LINE|L1 -34998 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 1406 chr14 45910098 45910886 + 3 NA Intergenic LTR1F2|LTR|ERV1 -153667 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 540-101 chr18 33960144 33960538 + 3 NA intron (NM_001353232, intron 6 of 9) intron (NM_001353232, intron 6 of 9) 88271 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 444-187 chr5 12177936 12178161 + 3 NA Intergenic FAM|SINE|Alu -273602 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 426-109 chr18 2265887 2266126 + 3 NA Intergenic Intergenic 305499 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 626-11 chr1 211075020 211075353 + 3 NA intron (NM_002238, intron 5 of 10) intron (NM_002238, intron 5 of 10) 58188 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 310-93 chr11 122299050 122299164 + 3 NA intron (NR_137179, intron 1 of 4) MSTB-int|LTR|ERVL-MaLR 10380 NR_137193 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 153-15 chr10 63862750 63862842 + 3 NA Intergenic MER106A|DNA|hAT-Charlie -340906 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 476-144 chr2 114622721 114622904 + 3 NA intron (NM_001321908, intron 2 of 25) MLT1K|LTR|ERVL-MaLR 161235 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 284-94 chr12 89269698 89269874 + 3 NA Intergenic Intergenic 82715 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 378-218 chr2 35267048 35267214 + 3 NA Intergenic Intergenic -204274 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 625-85 chr5 123627279 123627625 + 3 NA Intergenic L1MA8|LINE|L1 82035 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 518-233 chr5 59360629 59360886 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -3787 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 263-349 chr6 17639398 17639533 + 3 NA intron (NM_001278210, intron 14 of 20) intron (NM_001278210, intron 14 of 20) 39163 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 458-249 chr8 59577723 59577970 + 3 NA Intergenic L1ME1|LINE|L1 458636 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 844-33 chr2 75450474 75450892 + 3 NA Intergenic L1MA4A|LINE|L1 -73385 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 462-205 chr4 65061420 65061576 + 3 NA Intergenic Intergenic -56998 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 459-130 chr2 34732138 34732393 + 3 NA Intergenic Intergenic 54708 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 414-285 chr6 67697582 67697767 + 3 NA Intergenic L1MC1|LINE|L1 -357677 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 897-37 chr8 46362748 46363232 + 3 NA Intergenic ALR/Alpha|Satellite|centr 254653 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 460-254 chr6 19914752 19914964 + 3 NA Intergenic L1PA16|LINE|L1 77488 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 870-20 chr20 62110871 62111343 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -11368 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 571-119 chr3 193010808 193011125 + 3 NA Intergenic MIR3|SINE|MIR -93110 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 990-23 chr6 37863986 37864570 + 3 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 44551 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 262-124 chr14 56321793 56321915 + 3 NA Intergenic Intergenic -192477 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 260-189 chr19 14460936 14461097 + 3 NA intron (NM_002741, intron 9 of 21) (TATC)n|Simple_repeat|Simple_repeat 14338 NM_000955 5731 Hs.159360 NM_000955 ENSG00000160951 PTGER1 EP1 prostaglandin E receptor 1 protein-coding 1102-14 chr5 96222977 96223690 + 3 NA intron (NR_130776, intron 1 of 4) L1MA4A|LINE|L1 144195 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 381-169 chr19 44154306 44154519 + 3 NA intron (NM_006630, intron 5 of 5) intron (NM_006630, intron 5 of 5) -10650 NM_001146220 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 638-131 chr6 45264285 45264638 + 3 NA intron (NM_001350325, intron 2 of 10) AluSz|SINE|Alu -63856 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 516-243 chr8 15444072 15444353 + 3 NA Intergenic Intergenic -95875 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 472-266 chr6 40683057 40683350 + 3 NA Intergenic Intergenic -95839 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 764-51 chr4 54413210 54413637 + 3 NA Intergenic L1MEd|LINE|L1 80531 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 434-179 chr3 32042162 32042324 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR -60393 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 695-66 chr3 31470662 31471023 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -62083 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 391-297 chr5 136959895 136960051 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -168224 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 310-39 chr10 22795598 22795765 + 3 NA Intergenic L1ME1|LINE|L1 -81103 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 451-178 chr5 86053780 86054078 + 3 NA Intergenic Intergenic -228515 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 501-273 chr8 137015485 137015790 + 3 NA Intergenic L1MEc|LINE|L1 397951 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 465-135 chr2 129478651 129478954 + 3 NA Intergenic Intergenic -204911 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 304-81 chr11 73721790 73721991 + 3 NA intron (NM_198896, intron 2 of 7) intron (NM_198896, intron 2 of 7) 38203 NM_001243719 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 339-106 chr11 84698522 84698708 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 22327 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 998-9 chr16 80372598 80373117 + 3 NA intron (NR_120307, intron 2 of 5) MIR|SINE|MIR -167877 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 891-3 chr11 80899090 80899450 + 3 NA Intergenic L1MB8|LINE|L1 -136467 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 469-285 chr8 110046357 110046548 + 3 NA Intergenic Intergenic -70681 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 526-76 chr14 54098387 54098630 + 3 NA Intergenic L1MB8|LINE|L1 -141617 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 283-483 chrX 146194955 146195137 + 3 NA Intergenic Intergenic -167174 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 981-13 chr2 147620730 147621341 + 3 NA Intergenic Intergenic -223482 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 227-77 chr12 25533139 25533223 + 3 NA intron (NM_152590, intron 3 of 8) intron (NM_152590, intron 3 of 8) 20102 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 446-5 chr1 43111909 43112153 + 3 NA Intergenic L1M5|LINE|L1 -35873 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 974-16 chr5 163142407 163142904 + 3 NA Intergenic L1PA16|LINE|L1 -294916 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 589-43 chr17 58431339 58431736 + 3 NA intron (NM_001080439, intron 5 of 5) Tigger3d|DNA|TcMar-Tigger -13955 NM_017763 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 327-48 chr10 54684831 54685011 + 3 NA intron (NM_001354404, intron 4 of 34) Tigger3b|DNA|TcMar-Tigger -76964 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 500-205 chr4 66027246 66027500 + 3 NA Intergenic Intergenic -249451 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 488-177 chr3 122027464 122027692 + 3 NA Intergenic L1ME3Cz|LINE|L1 -5331 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 925-30 chr7 33301763 33302317 + 3 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 172476 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 481-74 chr12 129765912 129766195 + 3 NA intron (NM_133448, intron 1 of 8) MLT1I|LTR|ERVL-MaLR 137972 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 490-72 chr12 61330483 61330717 + 3 NA Intergenic Intergenic 862239 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 250-114 chr14 21108097 21108248 + 3 NA Intergenic Intergenic -3468 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 1300 chr11 97010347 97011053 + 3 NA Intergenic Intergenic 502275 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 489-185 chr4 34170546 34170756 + 3 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 99096 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 518-24 chr10 39179136 39179317 + 3 NA Intergenic ALR/Alpha|Satellite|centr 482630 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 684-8 chr1 157793444 157793772 + 3 NA TTS (NM_001159398) TTS (NM_001159398) -16476 NR_125358 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 604-117 chr4 34409573 34409949 + 3 NA Intergenic L1PA14|LINE|L1 -140014 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 408-246 chr4 104389681 104389858 + 3 NA Intergenic Intergenic -101196 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 515-64 chr14 30165067 30165350 + 3 NA Intergenic Intergenic -237361 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 1149-5 chr2 229124444 229124978 + 3 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 107381 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 453-171 chr3 175893395 175893562 + 3 NA Intergenic Intergenic -117145 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 382-87 chr13 28083619 28083877 + 3 NA intron (NM_004119, intron 1 of 23) L1M4|LINE|L1 16828 NR_130706 2322 Hs.507590 NM_004119 ENSG00000122025 FLT3 CD135|FLK-2|FLK2|STK1 fms related tyrosine kinase 3 protein-coding 168-75 chr3 3542274 3542369 + 3 NA Intergenic Intergenic -257110 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 434-150 chr2 111114673 111114918 + 3 NA intron (NR_122074, intron 1 of 3) intron (NR_122074, intron 1 of 3) 793 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 500-285 chr8 42113523 42113815 + 3 NA Intergenic Intergenic -39277 NM_001134296 10947 Hs.654529 NM_006803 ENSG00000070718 AP3M2 AP47B|CLA20|P47B adaptor related protein complex 3 subunit mu 2 protein-coding 613-52 chr2 23610940 23611261 + 3 NA intron (NM_052920, intron 3 of 13) L1MEg|LINE|L1 225921 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 584-166 chr8 21455564 21455780 + 3 NA Intergenic MER2B|DNA|TcMar-Tigger 157433 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 416-122 chr14 70427002 70427362 + 3 NA Intergenic AluJb|SINE|Alu -10092 NM_018373 55333 Hs.443661 NM_018373 ENSG00000213463 SYNJ2BP ARIP2|OMP25 synaptojanin 2 binding protein protein-coding 323-273 chr2 136680662 136680848 + 3 NA Intergenic L1PA10|LINE|L1 -84790 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 675-42 chr2 46246979 46247260 + 3 NA Intergenic L1PA15|LINE|L1 -50288 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 567-141 chr4 181514051 181514266 + 3 NA Intergenic Intergenic -249129 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 371-119 chr15 59361596 59361759 + 3 NA intron (NM_004998, intron 1 of 27) L1ME3Cz|LINE|L1 11194 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 518-88 chr15 35161957 35162205 + 3 NA Intergenic L2a|LINE|L2 -75245 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 557-29 chr11 12918353 12918669 + 3 NA intron (NM_021961, intron 10 of 12) intron (NM_021961, intron 10 of 12) 71037 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 461-53 chr11 103566563 103566751 + 3 NA Intergenic L2a|LINE|L2 -283249 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 759-13 chr11 31177574 31178041 + 3 NA intron (NM_001367979, intron 9 of 38) L1MA6|LINE|L1 -185121 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 537-204 chr5 141285999 141286280 + 3 NA Intergenic L1ME3B|LINE|L1 17910 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 1096-11 chr4 37355287 37355837 + 3 NA intron (NM_001144990, intron 2 of 6) intron (NM_001144990, intron 2 of 6) -98363 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 473-252 chr7 4941203 4941476 + 3 NA intron (NR_072989, intron 1 of 8) intron (NR_072989, intron 1 of 8) 17848 NM_001100600 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 468-112 chr17 51691277 51691491 + 3 NA intron (NM_001082533, intron 5 of 9) L1MA8|LINE|L1 255957 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 291-233 chr2 132879132 132879290 + 3 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) -36346 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 385-180 chr2 114423452 114423669 + 3 NA Intergenic Intergenic -19081 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 545-127 chr2 237305638 237305991 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 108350 NM_057166 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 375-61 chr10 111752890 111753161 + 3 NA Intergenic L1ME1|LINE|L1 430740 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 346-3 chr1 24689916 24690031 + 3 NA Intergenic AluJb|SINE|Alu 46394 NM_001366597 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 635-74 chr4 35364536 35364816 + 3 NA Intergenic L1PB1|LINE|L1 879263 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 544-194 chr6 56379703 56379970 + 3 NA intron (NM_001318752, intron 1 of 28) L1ME4b|LINE|L1 14292 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 542-217 chr8 51774915 51775311 + 3 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 34332 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 631-122 chr7 98096647 98096881 + 3 NA Intergenic L1MB7|LINE|L1 -10098 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 428-254 chr6 65420167 65420426 + 3 NA intron (NM_198283, intron 4 of 9) Tigger1|DNA|TcMar-Tigger 118878 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 476-20 chr1 239477971 239478245 + 3 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 91540 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 403-44 chr11 15391174 15391397 + 3 NA Intergenic AluSg|SINE|Alu 242183 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 402-248 chr4 122746549 122746766 + 3 NA Intergenic HERVL40-int|LTR|ERVL 13953 NM_152618 166379 Hs.400698 NM_152618 ENSG00000181004 BBS12 C4orf24 Bardet-Biedl syndrome 12 protein-coding 794-45 chr8 115112840 115113358 + 3 NA Intergenic Intergenic 554914 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 758-80 chr9 30326389 30326810 + 3 NA Intergenic Intergenic 81855 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 613-87 chr3 140779347 140779722 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 101470 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 484-122 chr2 41212680 41212915 + 3 NA Intergenic Intergenic -664758 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 312-222 chr2 22380100 22380277 + 3 NA Intergenic Intergenic -156291 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 661-7 chr10 75551651 75552041 + 3 NA promoter-TSS (NR_030337) promoter-TSS (NR_030337) -612 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 406-29 chr10 8549834 8550047 + 3 NA Intergenic Intergenic 44451 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 608-132 chr6 65536510 65536807 + 3 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 43146 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 749-84 chr7 41156965 41157283 + 3 NA Intergenic Intergenic 55520 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 619-58 chr16 78832502 78832915 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 733054 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 470-125 chr2 46670717 46671037 + 3 NA Intergenic Intergenic -28083 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 491-212 chr5 81449811 81450015 + 3 NA intron (NM_012446, intron 10 of 16) intron (NM_012446, intron 10 of 16) -55779 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 774-14 chr11 91575147 91575550 + 3 NA Intergenic Intergenic -649686 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 1231-3 chr2 49155648 49156446 + 3 NA Intergenic L1ME3F|LINE|L1 -1520 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 737-8 chr10 118902473 118902890 + 3 NA Intergenic AluSg|SINE|Alu -127033 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 626-30 chr11 121470127 121470429 + 3 NA intron (NM_003105, intron 2 of 47) intron (NM_003105, intron 2 of 47) 17964 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 786-23 chr15 53049217 53049676 + 3 NA Intergenic L1MB2|LINE|L1 -66919 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 606-68 chr18 47591003 47591438 + 3 NA intron (NR_147192, intron 2 of 2) MIRb|SINE|MIR 210724 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 498-176 chr3 118644991 118645222 + 3 NA TTS (NR_135573) TTS (NR_135573) 3338 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 334-293 chr2 170291675 170291871 + 3 NA intron (NM_001083615, intron 7 of 33) L1MA4|LINE|L1 59170 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 338-96 chr11 42165531 42165682 + 3 NA Intergenic L1M5|LINE|L1 -80148 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 500-200 chr4 41324036 41324235 + 3 NA Intergenic LTR31|LTR|ERV1 -35472 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 388-295 chr5 165588146 165588298 + 3 NA Intergenic Intergenic 1117943 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 474-138 chr2 78739623 78739845 + 3 NA Intergenic Intergenic 194203 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 651-106 chr7 17549032 17549315 + 3 NA intron (NR_110013, intron 1 of 3) AluJr4|SINE|Alu 9736 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 384-386 chr8 134513610 134513799 + 3 NA intron (NM_020863, intron 13 of 15) intron (NM_020863, intron 13 of 15) -84367 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 404-300 chr7 130360229 130360404 + 3 NA intron (NM_080385, intron 6 of 12) intron (NM_080385, intron 6 of 12) 6811 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 722-86 chrX 79071035 79071317 + 3 NA Intergenic L2c|LINE|L2 -99796 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 698-78 chr7 24269193 24269543 + 3 NA Intergenic L1ME4b|LINE|L1 -14822 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 282-382 chr5 101815380 101815550 + 3 NA Intergenic MIR|SINE|MIR 480819 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 652-93 chr5 21599864 21600320 + 3 NA Intergenic Intergenic 140612 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 550-198 chr6 50986514 50986859 + 3 NA Intergenic Intergenic 167815 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 437-108 chr18 32494476 32494628 + 3 NA Intergenic Intergenic -17111 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 489-216 chr5 155450801 155450971 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 437131 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 515-77 chr15 95625246 95625531 + 3 NA Intergenic Intergenic 192295 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 442-143 chr2 142910971 142911149 + 3 NA intron (NM_001199241, intron 3 of 14) L1PA16|LINE|L1 33396 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 191-95 chr2 53380714 53380806 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -387023 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 670-136 chr9 129941422 129941774 + 3 NA intron (NM_001363755, intron 6 of 15) AluJb|SINE|Alu 71993 NR_106914 102466750 NR_106914 ENSG00000276124 MIR6855 hsa-mir-6855 microRNA 6855 ncRNA 548-118 chr2 108125835 108126149 + 3 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat -73237 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 462-140 chr2 123751139 123751362 + 3 NA Intergenic L1M5|LINE|L1 273924 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 326-247 chr2 80906787 80907017 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 560044 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 668-90 chr6 88234370 88234666 + 3 NA Intergenic L1MA8|LINE|L1 -67169 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 356-253 chr2 99760342 99760505 + 3 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -270406 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 521-244 chr7 110846056 110846289 + 3 NA intron (NM_001350963, intron 5 of 5) MIR3|SINE|MIR -244834 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 311-254 chr2 78465446 78465586 + 3 NA Intergenic Intergenic -80015 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 500-128 chr2 46049375 46049616 + 3 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -247912 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 339-77 chr10 113502879 113503027 + 3 NA Intergenic Intergenic -47878 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 416-124 chr14 82136484 82136674 + 3 NA Intergenic Intergenic -393441 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 181-150 chr7 131228016 131228097 + 3 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 99723 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 946-25 chr8 81718627 81719135 + 3 NA intron (NR_033195, intron 1 of 6) (AT)n|Simple_repeat|Simple_repeat 2419 NM_024699 79752 Hs.655453 NM_024699 ENSG00000104231 ZFAND1 - zinc finger AN1-type containing 1 protein-coding 421-194 chr3 139412120 139412294 + 3 NA intron (NR_121609, intron 1 of 4) L1PB2|LINE|L1 22404 NR_121608 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 532-82 chr15 80622019 80622371 + 3 NA Intergenic L1MB3|LINE|L1 41092 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 579-78 chr2 207338446 207338753 + 3 NA Intergenic Intergenic -69175 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 979-5 chr12 15093560 15094052 + 3 NA Intergenic Intergenic -58117 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 365-106 chr13 26715694 26715896 + 3 NA Intergenic L1ME4b|LINE|L1 44991 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 332-242 chr2 32119487 32119628 + 3 NA intron (NM_001363875, intron 6 of 15) intron (NM_001363875, intron 6 of 15) -46284 NM_001193515 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 1057-16 chr7 83466563 83467229 + 3 NA intron (NM_001178129, intron 3 of 16) intron (NM_001178129, intron 3 of 16) 174535 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 1084-9 chr2 5158664 5159102 + 3 NA Intergenic L1ME2|LINE|L1 -502661 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 583-124 chr4 71092124 71092433 + 3 NA Intergenic Intergenic -94981 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 1089-14 chr5 167976236 167976815 + 3 NA intron (NM_001368145, intron 3 of 26) intron (NM_001368145, intron 3 of 26) -189320 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 582-96 chr22 35016411 35016794 + 3 NA Intergenic Intergenic -18686 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 358-122 chr14 71903712 71903897 + 3 NA Intergenic Intergenic -28367 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 653-24 chr11 79823922 79824282 + 3 NA Intergenic Intergenic -383072 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 543-128 chr2 115249546 115249844 + 3 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -59542 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 718-21 chr14 56509171 56509706 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger -4893 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 1348-7 chr5 15989239 15989986 + 3 NA Intergenic L1MA9|LINE|L1 54430 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 1084-28 chrUn_KI270517v1 2477 3246 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 358-62 chr11 30482985 30483134 + 3 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 97434 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 693-114 chrX 67971966 67972302 + 3 NA Intergenic L1PA3|LINE|L1 427511 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 751-36 chr2 112754665 112755057 + 3 NA intron (NR_130712, intron 5 of 9) L2b|LINE|L2 9748 NM_001304361 150468 Hs.434250 NM_152515 ENSG00000169607 CKAP2L - cytoskeleton associated protein 2 like protein-coding 499-108 chr2 3833724 3833932 + 3 NA intron (NM_001287444, intron 10 of 10) intron (NM_001287444, intron 10 of 10) 126986 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 732-36 chr18 1037558 1037926 + 3 NA Intergenic Intergenic -109749 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 858-27 chr2 186282380 186282896 + 3 NA Intergenic Intergenic -196321 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 333-43 chr1 225028800 225029008 + 3 NA intron (NM_001367479, intron 11 of 85) L1ME1|LINE|L1 99229 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 407-5 chr1 73722045 73722289 + 3 NA intron (NR_146300, intron 3 of 3) ERVL-int|LTR|ERVL 47488 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 745-11 chr12 107055016 107055550 + 3 NA intron (NM_004075, intron 1 of 12) L1MEg|LINE|L1 38266 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 925-20 chr2 228207254 228207860 + 3 NA Intergenic MIRc|SINE|MIR -25870 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 389-141 chr18 8216808 8216984 + 3 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 150138 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 185-23 chr10 67745670 67745764 + 3 NA Intergenic L1MA4|LINE|L1 -49522 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 439-137 chr2 98858675 98858984 + 3 NA intron (NM_207362, intron 1 of 9) L1MB7|LINE|L1 77396 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 739-45 chr21 17419192 17419742 + 3 NA Intergenic Intergenic -19423 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 551-101 chr2 211692224 211692583 + 3 NA intron (NM_001042599, intron 12 of 26) MLT1D|LTR|ERVL-MaLR 733957 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 666-54 chr2 73383888 73384289 + 3 NA Intergenic MER110-int|LTR|ERV1 -1670 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 1075-8 chr20 41363956 41364541 + 3 NA intron (NM_052846, intron 2 of 3) intron (NM_052846, intron 2 of 3) 2570 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 507-229 chr7 26560550 26560863 + 3 NA Intergenic Intergenic -21881 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 562-230 chrX 4919767 4920090 + 3 NA Intergenic Intergenic -286356 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 573-38 chr11 44464966 44465216 + 3 NA Intergenic MIRb|SINE|MIR -100572 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 501-250 chr7 133658658 133658963 + 3 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 166078 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 606-23 chr10 111064546 111064920 + 3 NA Intergenic L1MA5A|LINE|L1 -12296 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 651-109 chr7 61776480 61776892 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1527370 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 768-34 chr3 34315727 34316098 + 3 NA Intergenic Intergenic 517282 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 387-280 chr5 58712251 58712442 + 3 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 129271 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 390-236 chr3 53981019 53981217 + 3 NA Intergenic Intergenic -89259 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 1012-11 chr5 14821597 14822066 + 3 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 4181 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 527-21 chr10 11771865 11772217 + 3 NA Intergenic MER113A|DNA|hAT-Charlie 29659 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 826-46 chr3 145393982 145394299 + 3 NA Intergenic Intergenic 675045 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 497-287 chr8 111377652 111377889 + 3 NA intron (NR_146282, intron 1 of 3) L1MEf|LINE|L1 1131 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 368-19 chr1 102280569 102280800 + 3 NA Intergenic Intergenic -283450 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 393-53 chr11 76905739 76905904 + 3 NA intron (NM_001300953, intron 1 of 9) L1ME3Cz|LINE|L1 44903 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 428-139 chr2 149279642 149279886 + 3 NA Intergenic Intergenic -50221 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 423-146 chr2 197761858 197762037 + 3 NA intron (NM_001284361, intron 7 of 11) L1MA5A|LINE|L1 23372 NM_001284362 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 605-22 chr12 34424642 34424914 + 3 NA Intergenic ALR/Alpha|Satellite|centr 402282 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 350-99 chr12 65966209 65966359 + 3 NA TTS (NM_003483) TTS (NM_003483) 57442 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 531-213 chr6 51220745 51220959 + 3 NA Intergenic Intergenic -401018 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 470-260 chr8 27626205 27626511 + 3 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -7544 NM_016240 51435 Hs.128856 NM_016240 ENSG00000168077 SCARA3 APC7|CSR|CSR1|MSLR1|MSRL1 scavenger receptor class A member 3 protein-coding 620-73 chr2 232958211 232958498 + 3 NA intron (NM_019850, intron 3 of 14) intron (NM_019850, intron 3 of 14) -30203 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 428-156 chr20 42087094 42087417 + 3 NA intron (NM_133170, intron 28 of 31) AluSc8|SINE|Alu -468878 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 481-211 chr3 189668451 189668656 + 3 NA intron (NM_003722, intron 1 of 13) L1M4a1|LINE|L1 37164 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 775-74 chr6 50239225 50239658 + 3 NA Intergenic Intergenic -189512 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 179-32 chr16 83729612 83729686 + 3 NA intron (NM_001220489, intron 9 of 12) MIR|SINE|MIR 74327 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 540-116 chr2 107147179 107147491 + 3 NA Intergenic MIR|SINE|MIR 202190 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 403-13 chr1 157222504 157222759 + 3 NA Intergenic L1MA8|LINE|L1 -84040 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 442-93 chr15 59199793 59200041 + 3 NA intron (NM_004998, intron 16 of 27) intron (NM_004998, intron 16 of 27) -6926 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 516-230 chr7 4514426 4514739 + 3 NA Intergenic Intergenic -167713 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 350-174 chr17 34505415 34505623 + 3 NA Intergenic L1ME1|LINE|L1 73850 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 490-263 chr7 42663909 42664153 + 3 NA intron (NR_110833, intron 2 of 2) intron (NR_110833, intron 2 of 2) 42416 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 546-146 chr3 60124254 60124447 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -43441 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 631-117 chr7 71965732 71966022 + 3 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 371514 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 347-290 chr22 49109786 49110015 + 3 NA Intergenic Intergenic 243130 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 756-54 chr8 34002004 34002328 + 3 NA Intergenic Intergenic -402060 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 344-138 chr14 67700169 67700325 + 3 NA Intergenic MER101-int|LTR|ERV1 -1639 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 538-118 chr2 122124722 122124946 + 3 NA Intergenic L1PA7|LINE|L1 369183 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 554-60 chr12 59077210 59077453 + 3 NA Intergenic MIRb|SINE|MIR -156793 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 604-46 chr14 53889848 53890115 + 3 NA Intergenic Intergenic 58503 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 798-46 chr5 17410799 17411336 + 3 NA intron (NR_134274, intron 1 of 1) Tigger17a|DNA|TcMar-Tigger 6921 NR_134274 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 639-28 chr12 46762787 46763093 + 3 NA Intergenic L1MDa|LINE|L1 63057 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 440-274 chrX 7469133 7469352 + 3 NA Intergenic Intergenic 216769 NM_001320754 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 703-7 chr10 13138291 13138704 + 3 NA TTS (NM_021980) TTS (NM_021980) -23061 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 513-247 chr6 64542197 64542396 + 3 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 735460 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 485-76 chr14 53125337 53125556 + 3 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 27877 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 600-77 chr20 55075460 55075735 + 3 NA Intergenic Intergenic -347446 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 592-174 chr8 90257670 90258050 + 3 NA intron (NR_051989, intron 2 of 3) L1MEf|LINE|L1 36372 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 1133-7 chr5 32722100 32722872 + 3 NA intron (NM_000908, intron 1 of 7) MamRep605|LTR?|LTR? 11165 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 629-116 chr7 9627144 9627500 + 3 NA Intergenic Intergenic -6948 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 694-48 chr16 72673594 72673918 + 3 NA Intergenic L1MB4|LINE|L1 -8786 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 443-181 chr20 51316067 51316296 + 3 NA Intergenic AluSx1|SINE|Alu 136796 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 895-23 chr2 213500012 213500626 + 3 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 215855 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 542-107 chr2 193867050 193867313 + 3 NA Intergenic Intergenic -477088 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 686-87 chr9 2262356 2262606 + 3 NA Intergenic MIRc|SINE|MIR 104025 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 297-35 chr1 237836623 237836789 + 3 NA Intergenic Intergenic -25469 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 618-115 chr7 19631138 19631443 + 3 NA Intergenic L1M1|LINE|L1 74146 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 400-343 chr8 86922589 86922804 + 3 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 56281 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 630-38 chr16 73600786 73600996 + 3 NA Intergenic L2b|LINE|L2 214086 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 628-23 chr10 39265550 39265964 + 3 NA Intergenic ALR/Alpha|Satellite|centr 569161 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 331-524 chr8 70277330 70277462 + 3 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 125994 NM_001321707 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 227-69 chr11 86430741 86430882 + 3 NA Intergenic MIR|SINE|MIR 55924 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 589-42 chr17 56452099 56452365 + 3 NA intron (NM_001370326, intron 11 of 20) intron (NM_001370326, intron 11 of 20) -141467 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 1049-21 chr8 104613359 104613921 + 3 NA Intergenic L1PA15|LINE|L1 -24616 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 622-6 chr10 18375620 18375906 + 3 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) -24812 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 601-81 chr2 163211473 163211756 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -372847 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 814-66 chr9 80636389 80636813 + 3 NA Intergenic L1MCb|LINE|L1 661578 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 497-271 chr7 112370692 112370886 + 3 NA Intergenic Intergenic -52355 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 753-32 chr2 39214508 39214942 + 3 NA intron (NM_001009565, intron 2 of 7) LTR86B1|LTR|ERVL 14863 NM_001009565 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 1019-10 chr2 68612454 68613024 + 3 NA Intergenic AluSx1|SINE|Alu -30849 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 410-171 chr20 55769546 55769787 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 235853 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 619-131 chr8 137588605 137588837 + 3 NA Intergenic LTR8A|LTR|ERV1 -175133 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 913-8 chr13 109641842 109642328 + 3 NA Intergenic Intergenic -86189 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 605-25 chr14 37934726 37935029 + 3 NA Intergenic Intergenic -32753 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 493-299 chr8 119336452 119336682 + 3 NA Intergenic Intergenic 11396 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 399-122 chr17 69880589 69880780 + 3 NA intron (NR_109971, intron 5 of 5) L2c|LINE|L2 -81023 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 313-255 chr2 61361442 61361569 + 3 NA intron (NM_014709, intron 10 of 79) L1MA9|LINE|L1 55872 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 442-223 chr4 172969296 172969472 + 3 NA intron (NM_001034845, intron 10 of 12) L1M8|LINE|L1 -199427 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 668-22 chr12 132350026 132350417 + 3 NA Intergenic Intergenic 20371 NR_120467 101928416 NR_120467 ENSG00000255916 LOC101928416 - uncharacterized LOC101928416 ncRNA 429-3 chr1 52217297 52217478 + 3 NA intron (NM_007324, intron 2 of 17) intron (NM_007324, intron 2 of 17) 75293 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 543-110 chr19 37448184 37448513 + 3 NA intron (NM_152484, intron 2 of 5) L1MCc|LINE|L1 19096 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 501-177 chr3 156760792 156761013 + 3 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 51119 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 440-240 chr8 26781027 26781212 + 3 NA intron (NM_001322504, intron 1 of 1) MER1A|DNA|hAT-Charlie 84536 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 781-21 chr16 7179297 7179639 + 3 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -153377 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 476-23 chr10 22891522 22891808 + 3 NA Intergenic L1PB3|LINE|L1 -36359 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 529-237 chr9 103604211 103604501 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -279323 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 533-106 chr2 123822012 123822356 + 3 NA Intergenic L1MC3|LINE|L1 202990 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 517-73 chr14 19892110 19892343 + 3 NA Intergenic L1PB4|LINE|L1 15958 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 522-211 chr5 97600041 97600340 + 3 NA intron (NR_105028, intron 2 of 3) L1MA7|LINE|L1 95494 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 352-145 chr14 59609300 59609528 + 3 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) 725 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 531-185 chr4 155727258 155727601 + 3 NA intron (NM_001130685, intron 9 of 9) MIRc|SINE|MIR -31592 NM_001291953 2983 Hs.77890 NM_000857 ENSG00000061918 GUCY1B1 GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3 guanylate cyclase 1 soluble subunit beta 1 protein-coding 573-14 chr1 203652608 203652862 + 3 NA intron (NM_001365784, intron 1 of 20) Tigger1|DNA|TcMar-Tigger 24798 NM_001365784 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 633-12 chr10 48826348 48826753 + 3 NA intron (NM_020945, intron 35 of 61) L1PA10|LINE|L1 87685 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 937-11 chr15 96095199 96095616 + 3 NA intron (NR_158193, intron 6 of 7) intron (NR_158193, intron 6 of 7) 32434 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 520-296 chr8 89244415 89244635 + 3 NA Intergenic L1ME3C|LINE|L1 513186 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 596-32 chr10 111651190 111651520 + 3 NA Intergenic MIR|SINE|MIR 532410 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 1195-14 chr7 8732446 8733149 + 3 NA intron (NM_152745, intron 2 of 2) Tigger3b|DNA|TcMar-Tigger 299188 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 706-10 chr10 126120914 126121392 + 3 NA intron (NM_001288974, intron 5 of 18) (AT)n|Simple_repeat|Simple_repeat -147880 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 889-36 chr8 77266087 77266535 + 3 NA Intergenic Intergenic -184386 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 417-137 chr2 74758045 74758282 + 3 NA Intergenic L2a|LINE|L2 -74492 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 401-183 chr2 235458495 235458702 + 3 NA Intergenic Intergenic -35445 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 771-57 chr3 138538609 138539050 + 3 NA intron (NM_001288967, intron 2 of 13) L1M4|LINE|L1 53127 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 515-45 chr11 78745621 78745922 + 3 NA intron (NM_001098816, intron 19 of 33) intron (NM_001098816, intron 19 of 33) -170907 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 468-237 chr5 14480924 14481195 + 3 NA intron (NM_007118, intron 43 of 56) FLAM_C|SINE|Alu 17076 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 557-41 chr12 16088210 16088396 + 3 NA Intergenic Intergenic 176971 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 250-362 chr5 136862863 136862960 + 3 NA Intergenic L1MC4a|LINE|L1 -265286 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 377-393 chr8 65220965 65221159 + 3 NA Intergenic Intergenic -40722 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 944-19 chr4 14752374 14752923 + 3 NA intron (NR_126435, intron 2 of 6) THE1C-int|LTR|ERVL-MaLR 135521 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 656-55 chr2 64978846 64979082 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -9515 NM_001193493 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 269-144 chr16 12193375 12193547 + 3 NA intron (NM_032167, intron 13 of 20) AluSq|SINE|Alu 216727 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 686-84 chr8 124675388 124675861 + 3 NA intron (NM_001282971, intron 3 of 14) L1MB5|LINE|L1 52849 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 405-264 chr5 155373115 155373338 + 3 NA Intergenic L1ME4a|LINE|L1 359471 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 1072-6 chr14 70700199 70700667 + 3 NA intron (NR_125769, intron 2 of 3) MIR|SINE|MIR 1735 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 455-6 chr1 79667653 79667951 + 3 NA Intergenic Intergenic -661072 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 525-201 chr5 96517841 96518171 + 3 NA intron (NR_130776, intron 4 of 4) MIR|SINE|MIR -84758 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 702-32 chr16 82518848 82519180 + 3 NA Intergenic Intergenic -107955 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 696-30 chr12 61124471 61124858 + 3 NA Intergenic AluJb|SINE|Alu 1068175 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 391-24 chr1 194309211 194309442 + 3 NA Intergenic Intergenic 1004581 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 1181-5 chr11 112684750 112685274 + 3 NA Intergenic L1M5|LINE|L1 -129210 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 961-11 chr3 23640844 23641411 + 3 NA Intergenic Intergenic -164828 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 549-71 chr16 27147110 27147312 + 3 NA Intergenic LTR16A|LTR|ERVL -56315 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 580-135 chr4 53186288 53186495 + 3 NA intron (NM_152540, intron 4 of 8) L2c|LINE|L2 179670 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 273-46 chr10 35441996 35442111 + 3 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 105179 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 631-29 chr11 105779713 105780133 + 3 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 169217 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 330-56 chr10 31212344 31212494 + 3 NA intron (NR_134478, intron 1 of 2) L1M2|LINE|L1 24536 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 652-34 chr13 85253927 85254154 + 3 NA Intergenic L1PA7|LINE|L1 -105983 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 527-112 chr17 71017574 71017791 + 3 NA Intergenic MER21A|LTR|ERVL 184497 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 500-275 chr7 80317050 80317351 + 3 NA Intergenic Intergenic 57239 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 503-249 chr6 128905150 128905475 + 3 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 22171 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 801-14 chr15 94333629 94334055 + 3 NA intron (NM_018349, intron 3 of 21) intron (NM_018349, intron 3 of 21) -22088 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 573-207 chr9 11405348 11405584 + 3 NA Intergenic Intergenic 792260 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 897-40 chr9 90651746 90652217 + 3 NA Intergenic L1MB3|LINE|L1 -9157 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 360-142 chr15 60734625 60734814 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 53150 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 405-93 chr15 33529662 33529924 + 3 NA intron (NM_001243996, intron 3 of 102) intron (NM_001243996, intron 3 of 102) 218826 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 806-2 chr1 81593986 81594518 + 3 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -36550 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 349-435 chr5 169190979 169191210 + 3 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 72600 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 650-37 chr17 61180057 61180360 + 3 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 187496 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 681-48 chr3 104606574 104606939 + 3 NA Intergenic L2a|LINE|L2 -759957 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 406-141 chr2 50630990 50631257 + 3 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 65139 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 351-35 chr10 24950957 24951089 + 3 NA intron (NM_020200, intron 1 of 8) intron (NM_020200, intron 1 of 8) 1583 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 490-97 chr15 27227074 27227399 + 3 NA intron (NM_001270873, intron 3 of 5) AluJb|SINE|Alu -65917 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 485-117 chr19 34762234 34762599 + 3 NA intron (NM_001007248, intron 3 of 3) L1ME3F|LINE|L1 10799 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 513-111 chr18 32214462 32214780 + 3 NA intron (NM_005925, intron 11 of 14) intron (NM_005925, intron 11 of 14) 24582 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 531-227 chr7 63374619 63374820 + 3 NA Intergenic Intergenic 24322 NR_028349 100287834 Hs.742597 NR_028349 LOC100287834 - uncharacterized LOC100287834 ncRNA 1234-2 chr19 56524096 56524666 + 3 NA exon (NM_020813, exon 5 of 5) exon (NM_020813, exon 5 of 5) -14567 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 341-413 chr4 182958436 182958583 + 3 NA Intergenic MER34C_|LTR|ERV1 -41032 NM_001351748 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 547-35 chr11 55031361 55031620 + 3 NA Intergenic ALR/Alpha|Satellite|centr -230665 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 321-457 chr5 38691763 38691895 + 3 NA Intergenic Intergenic 28444 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 162-71 chr20 35456673 35456752 + 3 NA intron (NM_007186, intron 1 of 34) MIRc|SINE|MIR 1114 NM_007186 11190 Hs.443976 NM_007186 ENSG00000126001 CEP250 C-NAP1|CEP2|CNAP1|CRDHL2 centrosomal protein 250 protein-coding 572 chr1 34879355 34879762 + 3 NA intron (NM_001080418, intron 8 of 11) intron (NM_001080418, intron 8 of 11) -19809 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 558-233 chr9 82653789 82654139 + 3 NA Intergenic L1ME3Cz|LINE|L1 409178 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 1121-10 chr7 47813456 47813982 + 3 NA intron (NR_161269, intron 2 of 3) intron (NR_161269, intron 2 of 3) 18428 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 471-41 chr11 4462919 4463176 + 3 NA Intergenic HERVIP10B3-int|LTR|ERV1 13752 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 513-222 chr5 35948681 35948983 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 10031 NR_104630 100506406 Hs.116864 NR_104630 ENSG00000249748 LOC100506406 - uncharacterized LOC100506406 ncRNA 666-127 chrX 74981981 74982344 + 3 NA Intergenic L1PBa|LINE|L1 -56710 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 379-151 chr2 20862576 20862718 + 3 NA Intergenic Intergenic -39517 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 730-9 chr10 60265800 60266123 + 3 NA intron (NM_001204403, intron 6 of 43) L2b|LINE|L2 123914 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 459-71 chr13 77755866 77756151 + 3 NA intron (NM_001242868, intron 5 of 6) MIRb|SINE|MIR 14789 NM_001242870 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 820-54 chr6 145426460 145426880 + 3 NA Intergenic Intergenic 260207 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 474-192 chr3 193149519 193149735 + 3 NA Intergenic MLT2B2|LTR|ERVL -91595 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 649-117 chr9 13698793 13699147 + 3 NA Intergenic L1MC1|LINE|L1 -229001 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 241-391 chr8 54178933 54179038 + 3 NA Intergenic Intergenic 43744 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 263-141 chr16 64189517 64189654 + 3 NA Intergenic Intergenic 932478 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 664-68 chr22 26738860 26739303 + 3 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 66238 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 407-318 chr8 78987046 78987219 + 3 NA Intergenic L1MA8|LINE|L1 149603 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 480-247 chr6 25681270 25681518 + 3 NA intron (NM_006998, intron 6 of 10) LTR81B|LTR|Gypsy 29179 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 368-40 chr10 18282550 18282727 + 3 NA intron (NM_000724, intron 1 of 12) MIR|SINE|MIR 21916 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 495-269 chr9 30978683 30978969 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 402664 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 523-68 chr12 126138569 126138816 + 3 NA Intergenic Intergenic 42700 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 809-21 chr2 15120674 15121233 + 3 NA Intergenic Intergenic 440381 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 546-248 chr8 133106972 133107369 + 3 NA intron (NM_003235, intron 43 of 47) MIR1_Amn|SINE|MIR -4568 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 657-109 chrX 43591055 43591318 + 3 NA Intergenic AluSx1|SINE|Alu -63721 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 873-40 chr9 118949917 118950373 + 3 NA Intergenic Intergenic 270474 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 306-238 chr2 75150038 75150155 + 3 NA intron (NM_015727, intron 1 of 3) L1PA8|LINE|L1 49424 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 450 chr1 12745427 12745620 + 3 NA promoter-TSS (NM_152290) promoter-TSS (NM_152290) -677 NM_152290 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 860-29 chr2 125908281 125908795 + 3 NA Intergenic Intergenic 209447 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 725-44 chr4 111122509 111122944 + 3 NA Intergenic Intergenic -262079 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 379-280 chr5 152875052 152875224 + 3 NA intron (NR_109877, intron 2 of 4) L1PA15|LINE|L1 97211 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 510-5 chr1 81307644 81307831 + 3 NA intron (NM_001366008, intron 1 of 26) intron (NM_001366008, intron 1 of 26) 1342 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 494-289 chr8 98786027 98786228 + 3 NA intron (NM_001256312, intron 3 of 12) L1PA15-16|LINE|L1 39544 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 662-53 chr2 208968738 208969150 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 426302 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 561-63 chr13 100506671 100506975 + 3 NA intron (NR_148027, intron 22 of 23) intron (NR_148027, intron 22 of 23) -25808 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 659-52 chr2 39549705 39550089 + 3 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) 112481 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 305-339 chr3 14973179 14973350 + 3 NA intron (NM_003298, intron 1 of 14) AluJo|SINE|Alu -24823 NR_046251 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 499-22 chr10 27876625 27876833 + 3 NA intron (NM_001290021, intron 10 of 13) intron (NM_001290021, intron 10 of 13) 105142 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 452-118 chr2 19282235 19282479 + 3 NA Intergenic MIR3|SINE|MIR -66072 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 279-178 chr2 71288438 71288635 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie -43219 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 581-52 chr16 75173006 75173375 + 3 NA TTS (NM_153688).2 TTS (NM_153688).2 24139 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 510-268 chr7 118562062 118562402 + 3 NA Intergenic L1MB7|LINE|L1 337528 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 330-302 chr2 177566038 177566194 + 3 NA Intergenic Intergenic -13320 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 421-170 chr21 20010957 20011115 + 3 NA Intergenic AluJr4|SINE|Alu -111281 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 1028-15 chr7 95635891 95636348 + 3 NA Intergenic Intergenic -39603 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 581-87 chr2 194428696 194428986 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR 84572 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 150-53 chr2 126367451 126367520 + 3 NA Intergenic L1MEf|LINE|L1 -249500 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 457-198 chr5 63771800 63772035 + 3 NA Intergenic Intergenic 190375 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 826-39 chr21 30869419 30869904 + 3 NA Intergenic L2c|LINE|L2 11919 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 335-241 chr2 53454694 53454851 + 3 NA Intergenic Intergenic -313011 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 509-91 chr17 53683156 53683421 + 3 NA Intergenic L1PREC2|LINE|L1 -139639 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 492-82 chr14 32053186 32053444 + 3 NA Intergenic Intergenic 23384 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 793-45 chr5 162221531 162222065 + 3 NA Intergenic Intergenic 154156 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 776-43 chr5 44307252 44307688 + 3 NA intron (NM_004465, intron 2 of 2) intron (NM_004465, intron 2 of 2) -81262 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 1141-4 chr15 100274180 100274671 + 3 NA intron (NM_139057, intron 4 of 21) L1MB3|LINE|L1 67550 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 241-264 chr4 47726635 47726725 + 3 NA intron (NM_006587, intron 5 of 21) L1ME3B|LINE|L1 74011 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 1108-8 chr14 62358248 62358862 + 3 NA Intergenic Intergenic -218582 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 334-331 chr3 13286862 13287046 + 3 NA Intergenic HAL1ME|LINE|L1 133368 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 932 chr1 106106471 106107095 + 3 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -78530 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 359-184 chr17 60542721 60542975 + 3 NA Intergenic Intergenic -16606 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 927-16 chr5 45150014 45150420 + 3 NA Intergenic L1ME4a|LINE|L1 341270 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 528-28 chr10 25094635 25094870 + 3 NA Intergenic L1MA2|LINE|L1 -18306 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 609-30 chr14 37833313 37833563 + 3 NA intron (NM_001368142, intron 11 of 12) L1MA4|LINE|L1 61055 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 541-78 chr16 61666874 61667094 + 3 NA intron (NM_001796, intron 10 of 11) intron (NM_001796, intron 10 of 11) 369454 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 623-25 chr11 60671346 60671620 + 3 NA intron (NR_026946, intron 6 of 6) L1M4b|LINE|L1 -28129 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 761-40 chr3 2464518 2464896 + 3 NA intron (NM_175607, intron 3 of 24) MER5A|DNA|hAT-Charlie 225878 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 737-35 chr18 2263814 2264128 + 3 NA Intergenic Intergenic 307534 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 546-168 chr4 47188537 47188740 + 3 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 157071 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 443-58 chr11 101755107 101755278 + 3 NA Intergenic Intergenic -159818 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 675-95 chr8 75812609 75812958 + 3 NA Intergenic Intergenic 272815 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 856-8 chr10 57000565 57000928 + 3 NA Intergenic L1PA8|LINE|L1 303813 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 351-417 chr6 54387043 54387230 + 3 NA intron (NM_014464, intron 10 of 10) L1ME3|LINE|L1 78695 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 465-87 chr15 56389452 56389680 + 3 NA intron (NM_198524, intron 6 of 12) intron (NM_198524, intron 6 of 12) 24142 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 460-186 chr22 44060367 44060689 + 3 NA intron (NM_001243386, intron 1 of 11) intron (NM_001243386, intron 1 of 11) -8589 NM_001243385 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 377-22 chr1 167439736 167439946 + 3 NA intron (NM_000734, intron 2 of 7) CpG-1944 78688 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 447-281 chr8 135719762 135720000 + 3 NA Intergenic Intergenic 262425 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 408-264 chr5 31360698 31360933 + 3 NA Intergenic HAL1ME|LINE|L1 167129 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 440-223 chr6 123102949 123103140 + 3 NA Intergenic Intergenic 106809 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 551-159 chr5 90333173 90333468 + 3 NA Intergenic Intergenic -43249 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 440-247 chr8 79398246 79398477 + 3 NA Intergenic Intergenic 66173 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 441-121 chr2 34274430 34274684 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 207331 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 353-295 chr21 20318579 20318780 + 3 NA Intergenic L1MEf|LINE|L1 -59994 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 457-30 chr10 102957595 102957846 + 3 NA intron (NM_199076, intron 1 of 6) intron (NM_199076, intron 1 of 6) -39385 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 450-64 chr12 46306541 46306761 + 3 NA Intergenic L1MB3|LINE|L1 -37608 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 541-51 chr12 83667218 83667415 + 3 NA Intergenic Intergenic 980161 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 587-138 chr5 131126490 131126758 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 38632 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 616-48 chr15 59360962 59361271 + 3 NA intron (NM_004998, intron 1 of 27) MLT1H2|LTR|ERVL-MaLR 11755 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 633-70 chr2 200074433 200074896 + 3 NA Intergenic Intergenic -119173 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 425-66 chr12 11447403 11447644 + 3 NA intron (NR_148969, intron 2 of 4) intron (NR_148969, intron 2 of 4) 39155 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 766-45 chr21 18983588 18984040 + 3 NA Intergenic MER4A1|LTR|ERV1 -224002 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 218-73 chr12 78598730 78598837 + 3 NA Intergenic Intergenic -239037 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 532-252 chr7 84320278 84320591 + 3 NA Intergenic Intergenic -125645 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 346-188 chr17 33555777 33555942 + 3 NA intron (NM_001094, intron 1 of 9) LTR85b|LTR|Gypsy? -22099 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 547-156 chr4 48766709 48766975 + 3 NA intron (NM_015030, intron 1 of 63) L1MC5a|LINE|L1 13457 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 541-102 chr19 42649980 42650229 + 3 NA intron (NR_073180, intron 2 of 2) intron (NR_073180, intron 2 of 2) -55180 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 410-34 chr10 52624376 52624543 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 130945 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 859-25 chr22 49986155 49986698 + 3 NA Intergenic L1M4|LINE|L1 23560 NR_106879 102465493 NR_106879 ENSG00000276753 MIR6821 hsa-mir-6821 microRNA 6821 ncRNA 538-212 chr6 103367410 103367726 + 3 NA Intergenic MER67C|LTR|ERV1 1491978 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 305-277 chr2 155403357 155403485 + 3 NA Intergenic Intergenic 704726 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 783-83 chr9 115945625 115946011 + 3 NA Intergenic Intergenic -20611 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 551-212 chr8 77811394 77811647 + 3 NA Intergenic L1MA5A|LINE|L1 360823 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 473-287 chr8 135113835 135114093 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -120167 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1129-10 chr2 83380741 83381228 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -141830 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 508-142 chr3 21355828 21356134 + 3 NA Intergenic Intergenic -49745 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 536-101 chr18 5370802 5371119 + 3 NA Intergenic AluJo|SINE|Alu -73907 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 577-32 chr10 75287696 75287946 + 3 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -8562 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 1260 chr1 238976013 238977055 + 3 NA Intergenic L1ME3F|LINE|L1 -410034 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 411-309 chr9 80182724 80183020 + 3 NA Intergenic MER58D|DNA|hAT-Charlie 207849 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 510-148 chr2 91411903 91412129 + 3 NA Intergenic Intergenic 247933 NR_027238 654342 Hs.469287 NR_027238 LSP1P4 - LSP1 pseudogene 4 pseudo 462-36 chr10 113223397 113223686 + 3 NA Intergenic MIRb|SINE|MIR 94270 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 563-147 chr5 7684488 7684809 + 3 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 166485 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 568-202 chr8 135730065 135730273 + 3 NA Intergenic Intergenic 272713 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 446-152 chr2 99022381 99022606 + 3 NA intron (NM_001349013, intron 13 of 16) L1MB7|LINE|L1 -86268 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 465-76 chr13 103097168 103097474 + 3 NA Intergenic MIRb|SINE|MIR -30904 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 447-107 chr18 71969052 71969249 + 3 NA Intergenic L2b|LINE|L2 -186924 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 331-186 chr16 10348649 10348840 + 3 NA Intergenic AluSx|SINE|Alu -37317 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 1182-3 chr11 93269878 93270559 + 3 NA Intergenic Intergenic -60499 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 508-218 chr7 10616069 10616348 + 3 NA intron (NR_147499, intron 1 of 2) Tigger3c|DNA|TcMar-Tigger -86468 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 594-60 chr19 16060867 16061097 + 3 NA Intergenic MIR|SINE|MIR -4705 NR_146442 105372292 Hs.635664 NR_146442 ENSG00000267517 LINC01855 - long intergenic non-protein coding RNA 1855 ncRNA 557-63 chr16 54379033 54379437 + 3 NA Intergenic Intergenic -8536 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 571-79 chr2 136475108 136475327 + 3 NA Intergenic Intergenic -290328 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 596-75 chr16 77322485 77322815 + 3 NA intron (NM_199355, intron 13 of 22) intron (NM_199355, intron 13 of 22) 112384 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 178-124 chr6 110074371 110074452 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 96100 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 391-233 chr3 80877639 80877927 + 3 NA Intergenic Intergenic 107079 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 135-63 chr6 123752809 123752888 + 3 NA Intergenic L2a|LINE|L2 -50998 NM_001300738 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 355-285 chr20 43906912 43907111 + 3 NA Intergenic Intergenic -7841 NM_001098797 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 371-278 chr4 65147208 65147459 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -142833 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 429-172 chr20 7660342 7660525 + 3 NA Intergenic MIRb|SINE|MIR 280025 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 821-13 chr12 68241217 68241734 + 3 NA Intergenic L2a|LINE|L2 12129 NM_020525 50616 Hs.287369 NM_020525 ENSG00000127318 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 1008-6 chr15 27522615 27523092 + 3 NA intron (NM_033223, intron 7 of 9) L1MEf|LINE|L1 -361534 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 908-39 chr5 158361811 158362298 + 3 NA intron (NR_109888, intron 4 of 6) intron (NR_109888, intron 4 of 6) 47719 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 723-35 chr2 34994906 34995309 + 3 NA Intergenic Intergenic 317550 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 547-169 chr4 153742707 153742984 + 3 NA intron (NM_173662, intron 3 of 8) intron (NM_173662, intron 3 of 8) 17179 NM_173662 285533 Hs.388364 NM_173662 ENSG00000145428 RNF175 - ring finger protein 175 protein-coding 1014-22 chr5 162652357 162652886 + 3 NA Intergenic L1MA4|LINE|L1 584979 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 538-130 chr2 213327988 213328224 + 3 NA intron (NR_047660, intron 4 of 14) intron (NR_047660, intron 4 of 14) 43642 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 427-97 chr18 6112864 6113116 + 3 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -143754 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 471-199 chr4 135209224 135209456 + 3 NA Intergenic Intergenic -85781 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 512-181 chr4 18202674 18202938 + 3 NA Intergenic Intergenic -180931 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 449-106 chr19 51768008 51768339 + 3 NA intron (NM_001462, intron 1 of 1) intron (NM_001462, intron 1 of 1) 4784 NM_001462 2358 Hs.99855 NM_001462 ENSG00000171049 FPR2 ALXR|FMLP-R-II|FMLPX|FPR2A|FPRH1|FPRH2|FPRL1|HM63|LXA4R formyl peptide receptor 2 protein-coding 605-103 chr6 139067056 139067435 + 3 NA Intergenic Intergenic 38500 NM_021243 58527 Hs.600861 NM_021243 ENSG00000146386 ABRACL C6orf115|Costars|HSPC280|PRO2013 ABRA C-terminal like protein-coding 418-157 chr3 67008402 67008547 + 3 NA 3' UTR (NM_032505, exon 4 of 4) 3' UTR (NM_032505, exon 4 of 4) 10167 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 638-169 chr9 78163015 78163502 + 3 NA Intergenic HAL1|LINE|L1 -72817 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 1296-7 chr5 52326335 52327025 + 3 NA Intergenic Intergenic 318649 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 486-224 chr4 56740642 56740891 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -59060 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 414-23 chr10 49580597 49580905 + 3 NA Intergenic L1MEc|LINE|L1 -28344 NM_020984 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 589-100 chr3 189417487 189417761 + 3 NA Intergenic Intergenic -177030 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 349-403 chr5 12261306 12261532 + 3 NA Intergenic L2a|LINE|L2 -313438 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 260-222 chr2 153118634 153118805 + 3 NA Intergenic MIR|SINE|MIR 360043 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 642-6 chr1 185959134 185959457 + 3 NA intron (NM_031935, intron 11 of 106) intron (NM_031935, intron 11 of 106) 224904 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 500-260 chr6 141137782 141138065 + 3 NA Intergenic Intergenic 454109 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 471-222 chr6 22455708 22455963 + 3 NA Intergenic L1ME1|LINE|L1 -113731 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 457-137 chr20 7004207 7004447 + 3 NA Intergenic L1MD2|LINE|L1 236641 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 834-15 chr16 61833171 61833634 + 3 NA intron (NM_001796, intron 4 of 11) (TA)n|Simple_repeat|Simple_repeat 203036 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 401-317 chr8 65974348 65974512 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR -40548 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 371-362 chr7 45531293 45531492 + 3 NA Intergenic Intergenic -42748 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 444-105 chr18 57364977 57365223 + 3 NA 3' UTR (NM_015879, exon 4 of 4) 3' UTR (NM_015879, exon 4 of 4) 12543 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 446-171 chr21 24804036 24804226 + 3 NA Intergenic L2c|LINE|L2 -36419 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 424-194 chr4 71407839 71408078 + 3 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 68905 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 1146-8 chr21 7916258 7916680 + 3 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -86837 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 393-341 chr7 124700810 124700960 + 3 NA Intergenic Intergenic 64907 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 675-6 chr1 191042490 191042765 + 3 NA Intergenic L1MA7|LINE|L1 185871 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 273-296 chr3 83586797 83586946 + 3 NA Intergenic L1MA5A|LINE|L1 1282704 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 500-233 chr5 89673722 89673931 + 3 NA Intergenic Intergenic 342894 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 813-46 chr8 43773423 43773807 + 3 NA Intergenic ALR/Alpha|Satellite|centr 481173 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 478-169 chr21 26490260 26490548 + 3 NA intron (NM_052954, intron 2 of 3) L2c|LINE|L2 82882 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 429-198 chr3 106542853 106543058 + 3 NA Intergenic HERV35I-int|LTR|ERV1 -673554 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 625-82 chr5 44655545 44655845 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -145413 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 524-79 chr16 59493646 59493976 + 3 NA Intergenic MIR3|SINE|MIR 261380 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 855-35 chr3 89497027 89497534 + 3 NA Intergenic L1ME1|LINE|L1 389659 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 674-46 chr2 108229863 108230277 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -9898 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 472-74 chr13 50824743 50825092 + 3 NA intron (NM_001306135, intron 1 of 1) L1MEd|LINE|L1 17062 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 416-275 chr5 87406275 87406454 + 3 NA intron (NM_001239, intron 4 of 8) L2b|LINE|L2 6540 NM_001199189 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 376-431 chr9 81341238 81341436 + 3 NA Intergenic L1MD|LINE|L1 348198 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 1115-9 chr22 26977846 26978534 + 3 NA Intergenic MER102c|DNA|hAT-Charlie 74898 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 521-217 chr6 67275648 67276000 + 3 NA Intergenic Intergenic -779527 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 477-210 chr3 160109768 160110189 + 3 NA intron (NR_108088, intron 3 of 9) MER5B|DNA|hAT-Charlie 89329 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 652-124 chr8 144979955 144980274 + 3 NA intron (NR_023392, intron 4 of 4) intron (NR_023392, intron 4 of 4) -14751 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 447-86 chr15 100390624 100390902 + 3 NA intron (NR_120374, intron 1 of 4) L1MC4|LINE|L1 17824 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 663-68 chr3 26445320 26445576 + 3 NA Intergenic (ATA)n|Simple_repeat|Simple_repeat -177358 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 409-58 chr12 118370895 118371128 + 3 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 1896 NM_001346488 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 582-97 chr3 24782371 24782734 + 3 NA Intergenic Intergenic -46771 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 375-192 chr19 57619587 57619765 + 3 NA intron (NM_003435, intron 2 of 2) intron (NM_003435, intron 2 of 2) 5434 NM_003435 7693 Hs.469694 NM_003435 ENSG00000213762 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 365-369 chr7 29996592 29996758 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -6386 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 409-93 chr15 60509033 60509211 + 3 NA intron (NM_134260, intron 6 of 11) intron (NM_134260, intron 6 of 11) 29944 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 505-302 chr8 53383000 53383297 + 3 NA Intergenic L1MA7|LINE|L1 -131451 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 575-165 chr6 40044044 40044396 + 3 NA Intergenic L1PA10|LINE|L1 -109758 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 396-200 chr21 27207922 27208081 + 3 NA Intergenic Intergenic -240913 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 516-270 chr9 81961218 81961497 + 3 NA Intergenic L1MCa|LINE|L1 17857 NM_207416 389762 Hs.522246 NM_207416 ENSG00000186788 SPATA31D3 FAM75D3 SPATA31 subfamily D member 3 protein-coding 535-161 chr22 50004586 50004926 + 3 NA intron (NM_001371416, intron 2 of 14) AluSx|SINE|Alu 8009 NM_001371416 262-374 chr6 65183934 65184054 + 3 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -117424 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 458-269 chr8 136824171 136824437 + 3 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 293506 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 403-300 chr8 40630619 40630834 + 3 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) 267100 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 902-43 chr8 145036773 145037372 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -15395 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 554-199 chr8 51304437 51304792 + 3 NA Intergenic L1M5|LINE|L1 504831 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 267-363 chr5 175741063 175741253 + 3 NA Intergenic MIRc|SINE|MIR -55375 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 560-46 chr14 29917383 29917607 + 3 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 9601 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 1730-5 chr7 62869349 62870243 + 3 NA Intergenic ALR/Alpha|Satellite|centr 434260 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 575-72 chr18 7745537 7745777 + 3 NA intron (NM_002845, intron 1 of 30) L1MEg|LINE|L1 178341 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 465-156 chr20 47770985 47771196 + 3 NA intron (NM_198596, intron 1 of 20) intron (NM_198596, intron 1 of 20) 14974 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 769-19 chr15 26703520 26703928 + 3 NA intron (NM_001278631, intron 3 of 9) MLT1A1-int|LTR|ERVL-MaLR 13041 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 596-175 chr9 15345549 15345824 + 3 NA Intergenic AluSx3|SINE|Alu -38326 NM_001168340 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 720-9 chr10 47202412 47202954 + 3 NA Intergenic Intergenic -97514 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 622-157 chrX 65299333 65299676 + 3 NA Intergenic Intergenic -189231 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 549-74 chr16 75992802 75993033 + 3 NA Intergenic L1ME3A|LINE|L1 -266427 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 281-337 chr4 173252543 173252687 + 3 NA intron (NM_017423, intron 2 of 11) intron (NM_017423, intron 2 of 11) -15545 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 635-68 chr3 128559202 128559512 + 3 NA Intergenic MIR|SINE|MIR 16729 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 675-97 chr8 115250099 115250462 + 3 NA Intergenic Intergenic 417733 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 969-20 chr5 157436297 157436816 + 3 NA intron (NR_136204, intron 1 of 3) L1M4c|LINE|L1 -23463 NM_001099287 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA like domain containing 4 protein-coding 558-51 chr14 31907862 31908089 + 3 NA Intergenic AluSx3|SINE|Alu -36878 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 511-196 chr4 97765308 97765596 + 3 NA intron (NM_174952, intron 9 of 10) MLT1I|LTR|ERVL-MaLR 378024 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 403-69 chr12 32076430 32076736 + 3 NA Intergenic Intergenic -30224 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 447-108 chr19 6907519 6907797 + 3 NA intron (NM_001974, intron 9 of 20) L1MB5|LINE|L1 20079 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 510-16 chr1 194555705 194555890 + 3 NA Intergenic Intergenic 1251052 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 649-42 chr19 43911060 43911443 + 3 NA Intergenic L1ME1|LINE|L1 -9448 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 949-20 chr7 48375879 48376587 + 3 NA intron (NM_152701, intron 34 of 61) intron (NM_152701, intron 34 of 61) 204775 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 549-18 chr1 246990127 246990505 + 3 NA intron (NR_037892, intron 3 of 5) L1MA2|LINE|L1 17741 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 822-65 chr9 24213437 24213779 + 3 NA Intergenic (T)n|Simple_repeat|Simple_repeat 332068 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 741-61 chr6 116086851 116087286 + 3 NA Intergenic Intergenic -13785 NM_152729 221294 Hs.520341 NM_152729 ENSG00000178425 NT5DC1 C6orf200|LP2642|NT5C2L1 5'-nucleotidase domain containing 1 protein-coding 485-171 chr22 33576615 33576865 + 3 NA intron (NM_133642, intron 5 of 14) MER2|DNA|TcMar-Tigger 128180 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 669-103 chr7 53788333 53788579 + 3 NA intron (NR_038371, intron 1 of 5) L1ME3F|LINE|L1 23475 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 950-30 chr8 64862217 64862719 + 3 NA Intergenic Intergenic -63731 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 479-230 chr7 54259608 54259880 + 3 NA Intergenic Intergenic -70953 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 356-426 chr6 74704076 74704295 + 3 NA Intergenic Intergenic 424597 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 518-130 chr2 59802854 59803137 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 580041 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 531-243 chr8 118191897 118192237 + 3 NA non-coding (NR_109794, exon 5 of 5) non-coding (NR_109794, exon 5 of 5) -80248 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 575-56 chr15 25043741 25043956 + 3 NA intron (NR_146177, intron 23 of 147) L1MB7|LINE|L1 1874 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 287-410 chr8 99380595 99380752 + 3 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 156057 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 612-97 chr4 14751824 14752184 + 3 NA intron (NR_126435, intron 2 of 6) THE1C-int|LTR|ERVL-MaLR 136165 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 684-115 chr8 41052739 41053106 + 3 NA Intergenic L1PBa|LINE|L1 -155096 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 640-42 chr16 50672563 50672917 + 3 NA 3' UTR (NM_182854, exon 4 of 4) 3' UTR (NM_182854, exon 4 of 4) 3885 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 555-207 chr8 115724009 115724299 + 3 NA Intergenic L2b|LINE|L2 -55179 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 652-9 chr1 219684003 219684348 + 3 NA Intergenic L1MA4|LINE|L1 -71030 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 560-60 chr16 3301345 3301681 + 3 NA 5' UTR (NM_033208, exon 2 of 2) 5' UTR (NM_033208, exon 2 of 2) -3893 NM_153028 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 603-81 chr2 35840464 35840813 + 3 NA Intergenic Intergenic 369233 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 462-110 chr17 71154297 71154617 + 3 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 47722 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 607-70 chr2 34350507 34350880 + 3 NA Intergenic MIRb|SINE|MIR 283467 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 417-271 chr7 106729112 106729344 + 3 NA Intergenic L1MB8|LINE|L1 -68070 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 528-110 chr17 74072461 74072733 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -131081 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 309-568 chr8 136459261 136459478 + 3 NA Intergenic L1MDa|LINE|L1 -71429 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 477-211 chr3 165481441 165481672 + 3 NA intron (NR_125764, intron 3 of 5) MSTB2|LTR|ERVL-MaLR 274596 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 783-46 chr2 205572610 205573008 + 3 NA intron (NM_205863, intron 21 of 21) L2c|LINE|L2 -109691 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 863-49 chr8 72443445 72443913 + 3 NA Intergenic L1MC3|LINE|L1 -93546 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 568-52 chr14 66970346 66970592 + 3 NA intron (NM_001024218, intron 8 of 21) MamSINE1|SINE|tRNA-RTE -218971 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 478-223 chr4 145395926 145396095 + 3 NA Intergenic L1M5|LINE|L1 -55591 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 950-23 chr4 40362550 40363034 + 3 NA Intergenic Intergenic 27459 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 632-18 chr12 15165681 15166028 + 3 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 13931 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 516-57 chr12 133147862 133148045 + 3 NA intron (NM_015394, intron 2 of 4) L1ME1|LINE|L1 17326 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 775-17 chr11 81107657 81108075 + 3 NA Intergenic L1ME4c|LINE|L1 -345063 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 864-42 chr7 17971262 17971768 + 3 NA Intergenic Intergenic -31007 NM_001350868 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 414-202 chr3 8531564 8531791 + 3 NA intron (NM_001278233, intron 1 of 4) intron (NM_001278233, intron 1 of 4) 29854 NM_001278235 29995 Hs.475353 NM_014583 ENSG00000071282 LMCD1 - LIM and cysteine rich domains 1 protein-coding 858-49 chr8 123743355 123743721 + 3 NA Intergenic Intergenic -6145 NM_004306 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 557-169 chr6 48866225 48866477 + 3 NA Intergenic Intergenic 596902 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 684-71 chr3 45278436 45278857 + 3 NA Intergenic L1MA4|LINE|L1 -52359 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 375-300 chr4 113045619 113045801 + 3 NA intron (NM_001354275, intron 2 of 43) MIRc|SINE|MIR -3704 NM_020977 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 690-100 chr8 114978999 114979383 + 3 NA Intergenic Intergenic 688822 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 401-43 chr10 102277950 102278206 + 3 NA intron (NM_001199378, intron 3 of 39) AluJr|SINE|Alu 32546 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 701-76 chr5 113993442 113993816 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -368441 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 165-46 chr18 65114495 65114565 + 3 NA Intergenic L2c|LINE|L2 -635722 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 404-106 chr14 81684443 81684609 + 3 NA Intergenic Intergenic 58612 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 326-74 chr10 72652312 72652446 + 3 NA Intergenic L1ME1|LINE|L1 -26188 NM_001363513 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 1132-2 chr11 130740633 130741309 + 3 NA Intergenic L1MEc|LINE|L1 68015 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 482-201 chr5 50918895 50919130 + 3 NA Intergenic Intergenic 51175 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 672-50 chr2 14008179 14008530 + 3 NA Intergenic MER45C|DNA|hAT-Tip100 392604 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 581-60 chr17 70753470 70753846 + 3 NA Intergenic Intergenic 448521 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 644-99 chr7 126312912 126313194 + 3 NA Intergenic Intergenic 745131 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 573-17 chr1 233324036 233324359 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -3527 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 406-208 chr4 71884232 71884433 + 3 NA Intergenic L1MEd|LINE|L1 -78812 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 883-38 chr8 23598791 23599149 + 3 NA Intergenic Intergenic 70014 NM_001317814 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 702-43 chr2 40839730 40840019 + 3 NA Intergenic L1ME3|LINE|L1 -327439 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 287-48 chr10 29043134 29043300 + 3 NA Intergenic L1MC5a|LINE|L1 196809 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 459-291 chr8 34566558 34566719 + 3 NA Intergenic L1MC4|LINE|L1 -217283 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 804-3 chr1 164966428 164967090 + 3 NA Intergenic MamRep1894|DNA|hAT -192118 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 640-43 chr16 51258094 51258383 + 3 NA intron (NR_039672, intron 6 of 6) MLT1B|LTR|ERVL-MaLR -106966 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 326-389 chr4 175054031 175054277 + 3 NA Intergenic Intergenic 135796 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 255-147 chr16 60673674 60673842 + 3 NA Intergenic Intergenic -313965 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 418-120 chr2 108613717 108613957 + 3 NA intron (NM_001193482, intron 1 of 9) intron (NM_001193482, intron 1 of 9) 6690 NM_001193482 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 873-30 chr5 66482434 66482882 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 28946 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 637-58 chr2 30869186 30869574 + 3 NA Intergenic L1MB4|LINE|L1 -61934 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 377-317 chr5 29255020 29255213 + 3 NA Intergenic L1ME3A|LINE|L1 111613 NR_130777 101929660 Hs.171348 NR_130777 LINC02109 - long intergenic non-protein coding RNA 2109 ncRNA 288-318 chr5 20317886 20318063 + 3 NA intron (NR_146519, intron 1 of 1) MER103C|DNA|hAT-Charlie 12423 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 346-116 chr13 42415057 42415206 + 3 NA Intergenic Intergenic -9761 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 340-263 chr2 79940255 79940425 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -73757 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 248-290 chr4 111733748 111733952 + 3 NA Intergenic Intergenic -411604 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 470-37 chr11 78095092 78095301 + 3 NA Intergenic L1ME4b|LINE|L1 -15334 NM_001204055 4718 Hs.407860 NM_004549 ENSG00000151366 NDUFC2 B14.5b|CI-B14.5b|HLC-1|NADHDH2 NADH:ubiquinone oxidoreductase subunit C2 protein-coding 399-269 chr6 97985892 97986120 + 3 NA Intergenic L1MD2|LINE|L1 -38525 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 287-65 chr10 82814310 82814478 + 3 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -581474 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 381-39 chr10 20728939 20729094 + 3 NA Intergenic L1MEc|LINE|L1 168586 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 312-196 chr18 3751255 3751461 + 3 NA intron (NM_001242762, intron 2 of 9) AluJr|SINE|Alu 94000 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 636-158 chr9 25988743 25989044 + 3 NA Intergenic Intergenic -77782 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 499-235 chr6 162245526 162245790 + 3 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -481474 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 507-203 chr5 106274688 106274897 + 3 NA Intergenic Intergenic 736222 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 473-117 chr19 6619999 6620275 + 3 NA Intergenic L1M1|LINE|L1 -28987 NM_001330332 970 Hs.501497 NM_001252 ENSG00000125726 CD70 CD27-L|CD27L|CD27LG|LPFS3|TNFSF7|TNLG8A CD70 molecule protein-coding 352-125 chr13 83320844 83321090 + 3 NA Intergenic L1MC3|LINE|L1 561426 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 896-2 chr10 30203485 30204030 + 3 NA Intergenic L1MEf|LINE|L1 -8095 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 581-50 chr16 12685395 12685658 + 3 NA intron (NM_001099455, intron 2 of 2) MIRb|SINE|MIR -34795 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 156-53 chr2 78429155 78429236 + 3 NA Intergenic Intergenic -116336 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 918-18 chr22 32595060 32595515 + 3 NA intron (NM_003490, intron 7 of 13) intron (NM_003490, intron 7 of 13) 120050 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 508-230 chr8 14468037 14468219 + 3 NA intron (NM_001322881, intron 2 of 6) MIR|SINE|MIR 385382 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 456-56 chr12 24511550 24511789 + 3 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 50822 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 681-51 chr3 145674456 145674877 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 394519 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 446-101 chr14 67102079 67102364 + 3 NA intron (NM_001024218, intron 12 of 21) intron (NM_001024218, intron 12 of 21) -87219 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 539-9 chr1 103123143 103123393 + 3 NA Intergenic L1MB5|LINE|L1 -14746 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 360-62 chr11 35868796 35868960 + 3 NA Intergenic HAL1|LINE|L1 -75103 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 543-177 chr4 30685318 30685582 + 3 NA Intergenic Intergenic -34919 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 712-43 chr2 52468032 52468368 + 3 NA Intergenic LTR48|LTR|ERV1 97552 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 403-129 chr17 43085427 43085586 + 3 NA intron (NR_027676, intron 11 of 22) intron (NR_027676, intron 11 of 22) 38609 NM_007298 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 699-74 chr4 66101073 66101479 + 3 NA Intergenic Intergenic -175548 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 434-291 chr8 119563227 119563430 + 3 NA intron (NM_001330600, intron 24 of 25) intron (NM_001330600, intron 24 of 25) 29680 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 958-17 chr2 2884583 2885102 + 3 NA Intergenic L1MA8|LINE|L1 241184 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 485-66 chr13 77452257 77452472 + 3 NA Intergenic Intergenic -83310 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 197-16 chr1 210868477 210868592 + 3 NA intron (NM_002238, intron 7 of 10) L1ME1|LINE|L1 264840 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 452-69 chr13 76177451 76177644 + 3 NA Intergenic Intergenic -242415 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 370-432 chr8 50426346 50426494 + 3 NA intron (NR_135795, intron 4 of 18) Tigger3b|DNA|TcMar-Tigger 262289 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 414-290 chr6 132400179 132400349 + 3 NA intron (NM_015529, intron 1 of 11) intron (NM_015529, intron 1 of 11) 1211 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 532-104 chr19 19932875 19933165 + 3 NA intron (NM_031218, intron 3 of 3) intron (NM_031218, intron 3 of 3) 32074 NM_031218 81931 Hs.301059 NM_031218 ENSG00000184635 ZNF93 HPF34|HTF34|TF34|ZNF505 zinc finger protein 93 protein-coding 359-212 chr19 53693297 53693523 + 3 NA promoter-TSS (NR_030190) promoter-TSS (NR_030190) -983 NR_030190 574468 NR_030190 ENSG00000207580 MIR526B MIRN526B microRNA 526b ncRNA 671-47 chr2 118753894 118754177 + 3 NA Intergenic L1ME4a|LINE|L1 94148 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 529-94 chr19 34776017 34776303 + 3 NA Intergenic Intergenic -2945 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 361-113 chr12 77179775 77179943 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -114290 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 439-21 chr10 16664655 16664885 + 3 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -142891 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 399-312 chr8 112191738 112191886 + 3 NA Intergenic Intergenic -451681 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 578-77 chr19 36669621 36669929 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -2938 NM_001322823 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 509-26 chr10 81974161 81974392 + 3 NA intron (NR_163253, intron 2 of 10) L1PA13|LINE|L1 96589 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 208-131 chr2 159028675 159028788 + 3 NA intron (NM_001350063, intron 2 of 24) L1MB1|LINE|L1 60091 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 434-10 chr1 99219179 99219368 + 3 NA Intergenic L1MB1|LINE|L1 -45019 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 611-89 chr20 7592878 7593221 + 3 NA Intergenic Intergenic 221441 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 841-39 chr7 37054472 37054800 + 3 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 56840 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 393-259 chr5 3371396 3371560 + 3 NA Intergenic L1MA6|LINE|L1 -81338 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 581-165 chr8 53662509 53662758 + 3 NA Intergenic MER87B|LTR|ERV1 -138668 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 679-104 chr7 123215973 123216461 + 3 NA Intergenic Intergenic -16246 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 452-174 chr3 133731256 133731473 + 3 NA intron (NM_001354703, intron 7 of 22) intron (NM_001354703, intron 7 of 22) -15029 NM_001354704 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 531-221 chr6 164963055 164963239 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -141084 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 378-291 chr3 132812098 132812261 + 3 NA intron (NR_002811, intron 5 of 10) MLT1L|LTR|ERVL-MaLR -89720 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 590-26 chr11 105988929 105989300 + 3 NA Intergenic Intergenic 33126 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 476-27 chr10 62717494 62717764 + 3 NA Intergenic Intergenic -87091 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 769-54 chr5 121000580 121001015 + 3 NA Intergenic MER81|DNA|hAT-Blackjack -321753 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 569-18 chr1 232316912 232317210 + 3 NA Intergenic Intergenic 198547 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 325-217 chr17 34837977 34838163 + 3 NA Intergenic Intergenic 123390 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 500-37 chr10 111606918 111607102 + 3 NA Intergenic Intergenic 492719 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 503-208 chr4 12448741 12448991 + 3 NA Intergenic Intergenic 225415 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 585-68 chr2 35591027 35591414 + 3 NA Intergenic Intergenic 119815 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 197-178 chr5 137791521 137791628 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger -9619 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 904-23 chr2 15705599 15705959 + 3 NA intron (NR_110201, intron 4 of 5) MLT1C|LTR|ERVL-MaLR 14997 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 721-92 chrX 54675759 54676204 + 3 NA Intergenic L1PA13|LINE|L1 122274 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 1006-20 chr3 110509536 110510068 + 3 NA Intergenic L1PB1|LINE|L1 560157 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 912-28 chr22 25632188 25632668 + 3 NA intron (NM_001362778, intron 2 of 19) L1ME1|LINE|L1 67753 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 854-32 chr3 191598806 191599183 + 3 NA Intergenic L1ME1|LINE|L1 137831 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 570-135 chr3 56167254 56167605 + 3 NA intron (NR_132749, intron 4 of 17) intron (NR_132749, intron 4 of 17) 301038 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 735-44 chr2 100039468 100039988 + 3 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 65855 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 504-102 chr17 75644457 75644637 + 3 NA intron (NM_004259, intron 8 of 19) AluJo|SINE|Alu -1704 NM_001162997 100130933 Hs.662541 NM_001162997 ENSG00000259120 SMIM6 C17orf110|ELN small integral membrane protein 6 protein-coding 466-219 chr5 153703171 153703354 + 3 NA intron (NM_000827, intron 10 of 15) MER103C|DNA|hAT-Charlie 195725 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 352-182 chr17 44052177 44052311 + 3 NA intron (NM_001369486, intron 1 of 3) AluJr|SINE|Alu 14427 NM_001369484 124801 Hs.355570 NM_152344 ENSG00000161654 LSM12 PNAS-135 LSM12 homolog protein-coding 273-33 chr1 224339017 224339165 + 3 NA Intergenic AluSz|SINE|Alu -8902 NM_001243146 4931 Hs.497867 NM_002533 ENSG00000143748 NVL NVL2 nuclear VCP like protein-coding 408-270 chr5 100220907 100221082 + 3 NA Intergenic Tigger20a|DNA|TcMar-Tigger 167260 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 449-238 chr6 64476016 64476200 + 3 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 669272 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 590-104 chr3 80228744 80229028 + 3 NA Intergenic (ATATA)n|Simple_repeat|Simple_repeat -460888 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 534-57 chr11 130323198 130323543 + 3 NA intron (NR_148980, intron 1 of 6) intron (NR_148980, intron 1 of 6) 8377 NR_148980 646383 Hs.155288 NM_001039787 ENSG00000175773 ZBTB44-DT - ZBTB44 divergent transcript ncRNA 522-260 chr8 129414873 129415173 + 3 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 69119 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 356-309 chr22 49988790 49989035 + 3 NA Intergenic L1M4|LINE|L1 23853 NM_001371416 903-31 chr6 155991478 155991994 + 3 NA Intergenic L1PA8|LINE|L1 44939 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 385-284 chr4 145510224 145510546 + 3 NA intron (NM_001354817, intron 1 of 6) L1MEg|LINE|L1 6809 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 663-7 chr1 221153719 221154048 + 3 NA Intergenic L2b|LINE|L2 182413 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 713-79 chr9 71303321 71303787 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 143417 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 916-9 chr15 58023797 58024337 + 3 NA intron (NM_170696, intron 1 of 11) AluSp|SINE|Alu -10044 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 514-96 chr14 98794053 98794490 + 3 NA Intergenic Intergenic 82658 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 221-154 chr2 181132015 181132101 + 3 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 8221 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 461-133 chr2 82288230 82288527 + 3 NA Intergenic Intergenic -568425 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 488-234 chr6 61501760 61501999 + 3 NA Intergenic ALR/Alpha|Satellite|centr -72251 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 564-187 chr7 42680238 42680566 + 3 NA intron (NR_110833, intron 1 of 2) L1MA5A|LINE|L1 26045 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 470-294 chr9 124169043 124169404 + 3 NA Intergenic L1MEf|LINE|L1 -88383 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 409-318 chrX 50328262 50328419 + 3 NA intron (NM_033031, intron 8 of 12) MSTA|LTR|ERVL-MaLR 43798 NM_033670 85417 Hs.130310 NM_033031 ENSG00000147082 CCNB3 - cyclin B3 protein-coding 667-53 chr2 158701809 158702150 + 3 NA intron (NR_135242, intron 1 of 3) THE1D|LTR|ERVL-MaLR 33023 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 505-95 chr15 37406425 37406606 + 3 NA Intergenic Intergenic -305204 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 387-149 chr18 70272122 70272309 + 3 NA Intergenic LTR60B|LTR|ERV1 -16830 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 638-112 chr5 10890647 10891009 + 3 NA Intergenic Intergenic -129594 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 625-75 chr4 70055385 70055819 + 3 NA 3' UTR (NM_002159, exon 5 of 6) 3' UTR (NM_002159, exon 5 of 6) 5164 NM_001368990 3346 Hs.250959 NM_002159 ENSG00000126550 HTN1 HIS1 histatin 1 protein-coding 633-90 chr4 74397291 74397636 + 3 NA Intergenic L1MC4|LINE|L1 32318 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 1030-10 chr14 75797332 75797708 + 3 NA intron (NM_015072, intron 27 of 31) L1PB1|LINE|L1 136274 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 686-20 chr12 112742807 112743198 + 3 NA intron (NM_001347952, intron 1 of 21) MLT1D|LTR|ERVL-MaLR -47826 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 671-23 chr12 30325686 30326210 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 351296 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 542-81 chr18 4962733 4963148 + 3 NA Intergenic L1MA2|LINE|L1 -118242 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 434-238 chr5 173587567 173587733 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 8016 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 701-82 chr6 45258641 45258890 + 3 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -60995 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 543-191 chr4 167682897 167683132 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -409523 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 499-117 chr2 48780063 48780255 + 3 NA Intergenic L1MB7|LINE|L1 -24435 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 444-104 chr18 57306622 57306863 + 3 NA Intergenic Intergenic -45815 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 715-27 chr19 37130428 37130801 + 3 NA TTS (NM_001329522) TTS (NM_001329522) 41822 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 305-261 chr2 80048102 80048258 + 3 NA intron (NM_001282598, intron 7 of 17) MER53|DNA|hAT -181597 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 454-187 chr20 19524451 19524608 + 3 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -239933 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 351-390 chr5 104544635 104544857 + 3 NA Intergenic Intergenic -554728 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 526-106 chr18 57718540 57718773 + 3 NA intron (NM_005603, intron 2 of 27) L1M1|LINE|L1 84659 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 653-25 chr11 95532563 95532944 + 3 NA Intergenic L1MDa|LINE|L1 257029 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 392-76 chr13 66810335 66810565 + 3 NA intron (NM_020403, intron 2 of 3) MIRb|SINE|MIR -14719 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 427-43 chr12 22610921 22611142 + 3 NA intron (NR_135031, intron 1 of 1) (AT)n|Simple_repeat|Simple_repeat 14015 NR_135031 105369691 Hs.556287 NR_135030 LOC105369691 - uncharacterized LOC105369691 ncRNA 420-264 chr7 3200783 3200967 + 3 NA Intergenic MIRc|SINE|MIR -42302 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 637-100 chr6 18615192 18615421 + 3 NA intron (NR_149116, intron 4 of 7) intron (NR_149116, intron 4 of 7) 43522 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 741-82 chr9 132693009 132693404 + 3 NA non-coding (NR_133925, exon 6 of 6) non-coding (NR_133925, exon 6 of 6) 22742 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 489-224 chr6 45876200 45876491 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 61252 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 937-2 chr10 111366505 111366945 + 3 NA Intergenic Intergenic 252434 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 962-6 chr12 18019627 18020023 + 3 NA Intergenic L1PA15|LINE|L1 70368 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 706-17 chr12 45147487 45147809 + 3 NA Intergenic LOR1a|LTR|ERV1 68358 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 619-135 chr9 78952341 78952674 + 3 NA Intergenic Intergenic 193159 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 496-251 chr7 7272432 7272805 + 3 NA intron (NR_108073, intron 3 of 3) Charlie11|DNA|hAT-Charlie 17464 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 910-22 chr2 145704515 145705227 + 3 NA Intergenic L1MA2|LINE|L1 -882186 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 638-148 chr7 37018935 37019440 + 3 NA intron (NM_001206480, intron 15 of 21) MIR|SINE|MIR 21391 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 418-132 chr2 189962789 189963021 + 3 NA Intergenic Intergenic 99824 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 883-40 chr8 109450973 109451568 + 3 NA intron (NM_177531, intron 41 of 77) intron (NM_177531, intron 41 of 77) -88430 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 418-260 chr7 41584559 41584710 + 3 NA Intergenic Intergenic -109285 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 711-58 chr5 91807557 91807898 + 3 NA Intergenic Intergenic -424410 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 911-27 chr7 62838383 62838888 + 3 NA Intergenic ALR/Alpha|Satellite|centr 465421 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 576-160 chr7 86367995 86368240 + 3 NA Intergenic Intergenic -275792 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 411-300 chr8 135224548 135224766 + 3 NA Intergenic Intergenic -9474 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 784-5 chr1 175544211 175544750 + 3 NA intron (NM_003285, intron 1 of 22) L2c|LINE|L2 199115 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 1052-15 chr2 118521954 118522468 + 3 NA Intergenic MIR1_Amn|SINE|MIR 80755 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 873-22 chr3 79399102 79399636 + 3 NA intron (NM_002941, intron 2 of 30) L2|LINE|L2 -12358 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 499-156 chr22 28981625 28981875 + 3 NA intron (NM_032173, intron 1 of 8) AluSx1|SINE|Alu 49726 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 778-23 chr14 75204103 75204482 + 3 NA Intergenic Intergenic -27680 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 400-14 chr1 117981210 117981387 + 3 NA exon (NM_206996, exon 43 of 49) exon (NM_206996, exon 43 of 49) 51559 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 308-96 chr12 10324626 10324729 + 3 NA non-coding (NR_147040, exon 5 of 5) non-coding (NR_147040, exon 5 of 5) 13615 NR_159946 113523642 Hs.539490 NR_159946 LINC02617 - long intergenic non-protein coding RNA 2617 ncRNA 716-73 chr6 36081157 36081515 + 3 NA intron (NM_001315, intron 8 of 11) L1MB4|LINE|L1 -49177 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 536-223 chr8 24214894 24215255 + 3 NA Intergenic Intergenic -78966 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 351-212 chr2 48976945 48977168 + 3 NA intron (NM_000145, intron 8 of 9) L1PA7|LINE|L1 -82547 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 518-320 chr9 135595087 135595346 + 3 NA Intergenic L1MD|LINE|L1 20291 NR_034016 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 806-53 chr9 80464989 80465432 + 3 NA Intergenic Intergenic 490187 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 430-91 chr14 84078595 84078820 + 3 NA Intergenic LTR16B2|LTR|ERVL -1193225 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 698-74 chr6 130170416 130170683 + 3 NA intron (NM_001277185, intron 7 of 10) L1PA8|LINE|L1 45336 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 800-16 chr12 31491529 31491884 + 3 NA intron (NM_144973, intron 2 of 20) intron (NM_144973, intron 2 of 20) -98217 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 396-389 chrX 119157233 119157422 + 3 NA Intergenic Intergenic -6748 NM_020721 57481 Hs.97594 NM_020721 ENSG00000250423 KIAA1210 - KIAA1210 protein-coding 1081-5 chr14 72220491 72221079 + 3 NA intron (NM_001370288, intron 2 of 16) ERVL-E-int|LTR|ERVL 287258 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 579-70 chr2 110687139 110687364 + 3 NA Intergenic MER21C|LTR|ERVL -9144 NM_001278617 699 Hs.469649 NM_004336 ENSG00000169679 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 616-19 chr10 84045801 84046183 + 3 NA Intergenic Intergenic -93517 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 433-3 chr1 70703237 70703404 + 3 NA Intergenic Intergenic -3133 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 447-189 chr4 12370453 12370662 + 3 NA Intergenic Intergenic 147106 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 463-174 chr21 43948854 43949131 + 3 NA intron (NM_001037553, intron 1 of 8) L1M5|LINE|L1 23594 NM_001037553 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 274-69 chr11 39511317 39511419 + 3 NA Intergenic HAL1|LINE|L1 781762 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 168-130 chrX 82159739 82159830 + 3 NA Intergenic Tigger6a|DNA|TcMar-Tigger 957682 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 565-109 chr21 44672633 44672857 + 3 NA intron (NM_144991, intron 1 of 11) MSTA|LTR|ERVL-MaLR -5818 NM_181684 353323 Hs.567902 NM_181684 ENSG00000221864 KRTAP12-2 KAP12.2|KRTAP12.2 keratin associated protein 12-2 protein-coding 237-220 chr22 27230686 27230793 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -6060 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 704-18 chr12 25712742 25713109 + 3 NA Intergenic L1ME5|LINE|L1 -64347 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 527-53 chr11 125193753 125193983 + 3 NA intron (NM_022062, intron 1 of 12) MIRc|SINE|MIR 29117 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 688-16 chr10 111867502 111868000 + 3 NA Intergenic Intergenic 316014 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 668-44 chr19 57472015 57472270 + 3 NA 3' UTR (NM_001330613, exon 3 of 3) 3' UTR (NM_001330613, exon 3 of 3) 5424 NM_001330613 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 536-120 chr2 78444292 78444511 + 3 NA Intergenic L1M1|LINE|L1 -101130 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 652-74 chr20 51303192 51303521 + 3 NA Intergenic Intergenic 149621 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 535-155 chr20 44782808 44783000 + 3 NA intron (NM_001205317, intron 1 of 5) intron (NM_001205317, intron 1 of 5) 27642 NM_182970 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 384-201 chr20 39477591 39477780 + 3 NA Intergenic Intergenic -252937 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 370-471 chr9 35135071 35135252 + 3 NA Intergenic Intergenic -19299 NM_025182 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 376-435 chrX 7571468 7571617 + 3 NA Intergenic Intergenic -270720 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 410-40 chr10 82377107 82377315 + 3 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -144291 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 1013-8 chr2 119600565 119601252 + 3 NA intron (NR_073132, intron 7 of 24) Tigger2|DNA|TcMar-Tigger 56459 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 561-124 chr3 8079378 8079606 + 3 NA Intergenic LTR85b|LTR|Gypsy? -63185 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 1129-7 chr19 9413205 9413941 + 3 NA exon (NM_001271314, exon 11 of 11) exon (NM_001271314, exon 11 of 11) 22000 NM_001370397 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 600-47 chr17 58843407 58843756 + 3 NA intron (NM_014906, intron 1 of 6) AluJb|SINE|Alu 87712 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 950-31 chr8 86951009 86951497 + 3 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 84838 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 748-56 chr22 24111188 24111569 + 3 NA intron (NM_012295, intron 26 of 36) MER1B|DNA|hAT-Charlie -70109 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 538-226 chr7 123850990 123851249 + 3 NA intron (NM_012269, intron 2 of 4) intron (NM_012269, intron 2 of 4) 5950 NM_012269 23553 Hs.28673 NM_012269 ENSG00000106302 HYAL4 CSHY|HYAL-4 hyaluronidase 4 protein-coding 401-149 chr2 7626923 7627165 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR 205783 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 457-24 chr10 23084765 23084952 + 3 NA Intergenic L1MA7|LINE|L1 -10721 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 442-320 chrX 4277531 4277697 + 3 NA Intergenic Intergenic 355958 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 868-47 chr9 102970438 102970961 + 3 NA Intergenic L1MA7|LINE|L1 -24634 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 498-239 chr6 135530678 135531038 + 3 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 33057 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 514-141 chr2 44157779 44157996 + 3 NA Intergenic Intergenic -10916 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 539-119 chr2 116044410 116044705 + 3 NA Intergenic L1PREC2|LINE|L1 700742 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 446-8 chr1 60158827 60159057 + 3 NA Intergenic MIR3|SINE|MIR -85172 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 653-95 chr4 126384434 126384824 + 3 NA Intergenic Intergenic 877370 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 492-107 chr17 53956424 53956651 + 3 NA Intergenic Intergenic 133610 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 448-269 chr8 16799147 16799370 + 3 NA Intergenic LTR40A1|LTR|ERVL 203087 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 585-24 chr11 45595240 45595470 + 3 NA Intergenic Intergenic 70267 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 423-55 chr12 5584401 5584575 + 3 NA intron (NM_001278596, intron 21 of 25) intron (NM_001278596, intron 21 of 25) 90356 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 359-364 chr4 85877975 85878176 + 3 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) 50138 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 547-231 chr8 31549326 31549613 + 3 NA Intergenic L1MC4|LINE|L1 -90283 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 462-59 chr12 60184808 60185109 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 495588 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 360-350 chr5 17029997 17030176 + 3 NA Intergenic AluY|SINE|Alu -93798 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 403-309 chr8 109016710 109016881 + 3 NA Intergenic Intergenic -69833 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 284-437 chr9 28884776 28884899 + 3 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 4118 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 546-61 chr13 26510048 26510236 + 3 NA Intergenic Intergenic -47541 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 753-14 chr12 29878620 29879015 + 3 NA Intergenic Intergenic -94058 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 430-289 chr7 56468147 56468480 + 3 NA Intergenic Intergenic 15006 NR_108095 100240728 Hs.292105 NR_108095 ENSG00000225488 LOC100240728 - uncharacterized LOC100240728 ncRNA 258-19 chr1 173136140 173136243 + 3 NA Intergenic Intergenic 69341 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 380-358 chr7 23337313 23337457 + 3 NA intron (NM_006547, intron 10 of 14) intron (NM_006547, intron 10 of 14) 38046 NM_138446 115416 Hs.87385 NM_138446 ENSG00000156928 MALSU1 C7orf30|mtRsfA mitochondrial assembly of ribosomal large subunit 1 protein-coding 640-12 chr10 57289284 57289698 + 3 NA Intergenic Intergenic 15068 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 378-282 chr3 71350254 71350420 + 3 NA intron (NM_001349340, intron 3 of 19) intron (NM_001349340, intron 3 of 19) -45566 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 327-214 chr18 38992919 38993087 + 3 NA Intergenic Intergenic 629172 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 507-36 chr10 94437149 94437501 + 3 NA intron (NM_015188, intron 1 of 12) AluY|SINE|Alu 34784 NM_015188 23232 Hs.500598 NM_015188 ENSG00000108239 TBC1D12 - TBC1 domain family member 12 protein-coding 872-25 chr19 8812965 8813448 + 3 NA exon (NM_144693, exon 8 of 10) exon (NM_144693, exon 8 of 10) 8857 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 438-110 chr2 22834997 22835205 + 3 NA Intergenic L2a|LINE|L2 298622 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 437-262 chr7 140413294 140413506 + 3 NA intron (NM_001008749, intron 3 of 3) L1M1|LINE|L1 9342 NM_001008749 401409 Hs.583545 NM_001008749 ENSG00000146955 RAB19 RAB19B RAB19, member RAS oncogene family protein-coding 673-13 chr10 42393953 42394304 + 3 NA Intergenic Intergenic -26083 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 452-210 chr5 58938000 58938220 + 3 NA Intergenic Intergenic 61788 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 536-180 chr5 11767437 11767698 + 3 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 136879 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 315-124 chr14 39213295 39213523 + 3 NA Intergenic MER33|DNA|hAT-Charlie -20506 NM_001329214 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 513-292 chr8 139746928 139747206 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -43944 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 454-131 chr19 29538488 29538705 + 3 NA intron (NM_001146339, intron 4 of 4) MSTB|LTR|ERVL-MaLR 12012 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 499-187 chr4 98403814 98404081 + 3 NA intron (NM_021159, intron 6 of 14) intron (NM_021159, intron 6 of 14) 142563 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 463-271 chr7 80933317 80933546 + 3 NA Intergenic Intergenic -11042 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 542-83 chr18 56228664 56228899 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -37519 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 364-316 chr4 127323160 127323324 + 3 NA Intergenic Intergenic -309715 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 539-219 chr9 119391217 119391468 + 3 NA Intergenic L1ME1|LINE|L1 -21907 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 356-357 chr4 45024222 45024432 + 3 NA Intergenic Intergenic -297693 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 842-20 chr2 34643906 34644308 + 3 NA Intergenic Intergenic -33450 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 249-424 chr8 108430025 108430191 + 3 NA Intergenic Intergenic -13475 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 928-29 chr7 8476479 8476973 + 3 NA intron (NM_152745, intron 2 of 2) HAL1M8|LINE|L1 43117 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 651-83 chr3 40531223 40531560 + 3 NA intron (NM_001287245, intron 4 of 5) intron (NM_001287245, intron 4 of 5) 6431 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 535-174 chr3 180539572 180539805 + 3 NA Intergenic MIRb|SINE|MIR -62475 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 1112-13 chr8 88694381 88694913 + 3 NA Intergenic L1M3f|LINE|L1 -367164 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 357-41 chr10 82775624 82775764 + 3 NA intron (NR_163252, intron 3 of 8) L1MA9|LINE|L1 -542774 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 466-20 chr1 221056834 221057046 + 3 NA Intergenic Intergenic -176800 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 535-181 chr4 42989096 42989352 + 3 NA intron (NM_001080476, intron 2 of 3) MLT1B|LTR|ERVL-MaLR 95958 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 451-80 chr14 89787023 89787278 + 3 NA Intergenic MLT2A2|LTR|ERVL 167386 NM_001284268 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 1016-7 chr2 54367183 54367970 + 3 NA Intergenic Intergenic 36692 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 449-234 chr6 52452646 52452840 + 3 NA exon (NM_018100, exon 4 of 11) exon (NM_018100, exon 4 of 11) 31735 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 276-167 chr15 68670456 68670580 + 3 NA intron (NM_006091, intron 2 of 11) intron (NM_006091, intron 2 of 11) 29015 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 488-117 chr19 34061493 34061848 + 3 NA Intergenic Intergenic -110834 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 324-434 chr5 116744705 116744886 + 3 NA intron (NR_104678, intron 3 of 3) intron (NR_104678, intron 3 of 3) 17414 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 583-22 chr10 97983870 97984199 + 3 NA intron (NM_001206528, intron 2 of 14) LTR84b|LTR|ERVL 46587 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 481-155 chr2 142913347 142913601 + 3 NA intron (NM_001199241, intron 3 of 14) L1PA16|LINE|L1 35810 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 298-462 chr8 83790616 83790752 + 3 NA Intergenic Intergenic 386926 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 369-263 chr3 41341800 41341966 + 3 NA intron (NR_136342, intron 33 of 34) intron (NR_136342, intron 33 of 34) 142378 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 439-114 chr18 6313154 6313346 + 3 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 45780 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 1118-7 chr18 75004944 75005493 + 3 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 200295 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 243-202 chr2 44916579 44916711 + 3 NA Intergenic Intergenic 22243 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 681-2 chr10 14352870 14353230 + 3 NA Intergenic Intergenic -22126 NM_018027 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 593-151 chr8 88969456 88969685 + 3 NA Intergenic Intergenic -642087 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 364-469 chr9 28954437 28954711 + 3 NA intron (NM_001354574, intron 1 of 5) Charlie1a|DNA|hAT-Charlie -65619 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 620-9 chr1 224757591 224757912 + 3 NA Intergenic MIR|SINE|MIR 141434 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 525-111 chr2 28036730 28037048 + 3 NA intron (NM_199193, intron 6 of 13) L2c|LINE|L2 40522 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 442-219 chr4 114201638 114201869 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -222106 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 390-416 chr9 38760510 38760725 + 3 NA Intergenic L1MCb|LINE|L1 139529 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 526-88 chr16 6840354 6840582 + 3 NA intron (NM_001142334, intron 1 of 13) MLT1A0|LTR|ERVL-MaLR 66659 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 401-249 chr5 12594996 12595170 + 3 NA intron (NR_033383, intron 1 of 3) intron (NR_033383, intron 1 of 3) 20226 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 417-247 chr6 129976959 129977191 + 3 NA Intergenic MLT2B3|LTR|ERVL -41294 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 515-66 chr14 42947438 42947675 + 3 NA Intergenic L1P4a|LINE|L1 1340700 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 425-173 chr22 26668910 26669242 + 3 NA non-coding (NR_003491, exon 5 of 5) non-coding (NR_003491, exon 5 of 5) -3767 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 556-150 chr3 168085101 168085444 + 3 NA intron (NM_001308155, intron 1 of 14) MLT1F2-int|LTR|ERVL-MaLR 10652 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 821-43 chr5 3396899 3397328 + 3 NA Intergenic Intergenic -55703 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 606-105 chr3 34477748 34478107 + 3 NA Intergenic L1M3|LINE|L1 679297 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 953-2 chr1 80919829 80920369 + 3 NA Intergenic MSTB2|LTR|ERVL-MaLR 278812 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 468-6 chr1 76728167 76728413 + 3 NA Intergenic L2a|LINE|L2 50977 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 597-7 chr1 69441681 69442075 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 8623 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 522-22 chr10 59154875 59155222 + 3 NA Intergenic LTR40c|LTR|ERVL 21416 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 870-36 chr6 96399581 96400036 + 3 NA Intergenic L1ME2z|LINE|L1 -121998 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 514-289 chr8 126189618 126189850 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -135761 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 579-148 chr7 8865506 8865843 + 3 NA Intergenic L2a|LINE|L2 432065 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 893-34 chr3 130457576 130458108 + 3 NA intron (NM_001278298, intron 37 of 40) intron (NM_001278298, intron 37 of 40) -102492 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 693-108 chr8 142376058 142376388 + 3 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 26959 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 917-2 chr1 232932573 232933054 + 3 NA Intergenic LTR40a|LTR|ERVL -17798 NR_138026 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 566-54 chr15 48841799 48842005 + 3 NA intron (NM_203349, intron 10 of 11) intron (NM_203349, intron 10 of 11) -30833 NM_014985 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 490-39 chr10 44153395 44153583 + 3 NA Intergenic L1PA8|LINE|L1 -139261 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 271-92 chr12 31504900 31505020 + 3 NA intron (NM_001308339, intron 1 of 22) MLT1J2|LTR|ERVL-MaLR -84963 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 586-24 chr10 111101272 111101758 + 3 NA Intergenic Intergenic -12776 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 478-285 chr8 65044240 65044487 + 3 NA Intergenic Intergenic 135977 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 503-263 chr7 50841654 50841881 + 3 NA Intergenic MIRb|SINE|MIR -48314 NM_001371008 778-26 chr15 58466159 58466511 + 3 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 32400 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 287-230 chr21 19145221 19145375 + 3 NA Intergenic Intergenic -385486 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 704-58 chr4 35067470 35067846 + 3 NA Intergenic Intergenic -797911 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 652-87 chr4 52265292 52265651 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 214167 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 385-400 chr9 16947788 16947964 + 3 NA Intergenic L1ME4a|LINE|L1 -77206 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 453-237 chr6 149052026 149052239 + 3 NA intron (NM_005715, intron 7 of 7) intron (NM_005715, intron 7 of 7) -19471 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 442-30 chr10 66652501 66652771 + 3 NA intron (NM_001127384, intron 9 of 17) L1MA8|LINE|L1 -273400 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 888-27 chr3 1885644 1886187 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -212888 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 649-88 chr5 102292940 102293378 + 3 NA intron (NM_180991, intron 1 of 12) intron (NM_180991, intron 1 of 12) 3125 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 388-320 chr7 20317749 20317940 + 3 NA Intergenic Intergenic -13056 NM_002214 3696 Hs.592171 NM_002214 ENSG00000105855 ITGB8 - integrin subunit beta 8 protein-coding 174-56 chr18 27818969 27819028 + 3 NA Intergenic Intergenic 217643 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 448-150 chr22 47971589 47971815 + 3 NA Intergenic MER3|DNA|hAT-Charlie -302662 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 772-35 chr3 16006908 16007380 + 3 NA Intergenic Intergenic 133373 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 239-86 chr13 50613177 50613273 + 3 NA Intergenic Intergenic -85776 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 612-74 chr2 224482160 224482531 + 3 NA intron (NM_001257197, intron 12 of 14) intron (NM_001257197, intron 12 of 14) -80238 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 388-365 chr9 30518357 30518533 + 3 NA Intergenic L1MDb|LINE|L1 -109991 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 882-43 chr8 58299883 58300226 + 3 NA Intergenic LTR35|LTR|ERV1 -27953 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 636-151 chr8 124878154 124878439 + 3 NA Intergenic L2c|LINE|L2 -56238 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 425-71 chr12 71319774 71320062 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie -119880 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 886-35 chr8 137451848 137452358 + 3 NA Intergenic Intergenic -38515 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 560-119 chr3 180294606 180294990 + 3 NA Intergenic Intergenic -119375 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 944-24 chr7 147672987 147673394 + 3 NA TTS (NR_133929) TTS (NR_133929) 1511 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 835-53 chr8 72393867 72394219 + 3 NA Intergenic HERV9-int|LTR|ERV1 -142409 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 485-325 chrX 99797552 99797800 + 3 NA Intergenic Intergenic 612597 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 2048 chr11 50457385 50458605 + 3 NA Intergenic ALR/Alpha|Satellite|centr 48848 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 360-266 chr20 46482389 46482660 + 3 NA Intergenic (TTAATTT)n|Simple_repeat|Simple_repeat -17232 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 410-306 chr8 64684827 64685066 + 3 NA intron (NM_004820, intron 1 of 5) L1MB8|LINE|L1 -103054 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 486-291 chr8 79131205 79131386 + 3 NA Intergenic L2a|LINE|L2 -200893 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 609-129 chr7 63989138 63989429 + 3 NA Intergenic Intergenic -9523 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 410-75 chr12 129634825 129635060 + 3 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 269083 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 344-528 chrX 4233297 4233532 + 3 NA Intergenic Intergenic -312672 NR_146579 729162 Hs.657302 NR_146578 FAM239B - zinc finger protein 839 pseudogene pseudo 403-214 chr4 33627089 33627298 + 3 NA Intergenic Intergenic 412700 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 1826-2 chr2 97973031 97973982 + 3 NA intron (NM_015348, intron 1 of 40) L1ME1|LINE|L1 22442 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 687-37 chr15 23720861 23721234 + 3 NA Intergenic L1MA8|LINE|L1 -33742 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 308-385 chr5 74070346 74070461 + 3 NA Intergenic MIR|SINE|MIR 237922 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 1123-6 chr14 40406842 40407450 + 3 NA Intergenic FordPrefect|DNA|hAT-Tip100 -547565 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 398-168 chr2 102345123 102345283 + 3 NA non-coding (NR_104167, exon 9 of 9) non-coding (NR_104167, exon 9 of 9) 7946 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 477-80 chr12 91218738 91219015 + 3 NA Intergenic Intergenic -36059 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 860-46 chr9 70481891 70482417 + 3 NA Intergenic AluY|SINE|Alu -67497 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 788-39 chr3 189242542 189243033 + 3 NA intron (NM_198485, intron 4 of 5) L1ME4b|LINE|L1 -2193 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 1109-5 chr18 12841456 12841972 + 3 NA promoter-TSS (NM_001308287) promoter-TSS (NM_001308287) -752 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 561-193 chr7 144053534 144053840 + 3 NA Intergenic Intergenic 3285 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 648-97 chr3 158265851 158266106 + 3 NA intron (NM_001271838, intron 4 of 9) L1MEb|LINE|L1 155889 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 693-87 chr6 28191961 28192292 + 3 NA Intergenic L1MD1|LINE|L1 26803 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 356-142 chr14 46124416 46124577 + 3 NA intron (NR_102702, intron 1 of 3) L1MEg|LINE|L1 60337 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 732-16 chr11 27266670 27267028 + 3 NA Intergenic L2b|LINE|L2 -46736 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 1084-7 chr19 33851164 33851776 + 3 NA Intergenic L1M2|LINE|L1 54600 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 443-306 chr9 26769561 26769837 + 3 NA Intergenic MamRep605|LTR?|LTR? 123103 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 696-113 chr9 81382571 81383124 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 306688 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 751-18 chr14 61823609 61824057 + 3 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 11130 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 303-511 chrX 143054787 143054963 + 3 NA Intergenic Intergenic 28947 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 348-42 chr1 240724784 240724971 + 3 NA Intergenic AluJb|SINE|Alu -112722 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 528-54 chr11 115562803 115562994 + 3 NA Intergenic L2|LINE|L2 -58483 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 413-93 chr14 98503928 98504135 + 3 NA Intergenic Intergenic -207582 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 340-398 chr4 47350477 47350669 + 3 NA intron (NM_000812, intron 5 of 8) MIRb|SINE|MIR 113129 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 476-146 chr2 119508852 119509083 + 3 NA intron (NM_002980, intron 1 of 12) intron (NM_002980, intron 1 of 12) 15485 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 420-137 chr2 73356162 73356353 + 3 NA Intergenic L1MB8|LINE|L1 -29501 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 318-280 chr2 116486058 116486252 + 3 NA Intergenic L1MA4A|LINE|L1 1142340 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 562-109 chr2 84569879 84570202 + 3 NA intron (NM_001370, intron 11 of 76) L1MC5a|LINE|L1 53585 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 847-45 chr7 5101773 5102471 + 3 NA Intergenic AluJr|SINE|Alu 30062 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 524-232 chr7 32194977 32195257 + 3 NA intron (NM_001322059, intron 2 of 17) L1MD1|LINE|L1 104211 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 446-3 chr1 34212580 34212788 + 3 NA intron (NM_032884, intron 6 of 6) intron (NM_032884, intron 6 of 6) 35777 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 328-206 chr17 28790254 28790506 + 3 NA 5' UTR (NM_001288637, exon 2 of 5) 5' UTR (NM_001288637, exon 2 of 5) 22091 NM_001288634 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 461-77 chr14 62211164 62211338 + 3 NA Intergenic Intergenic -71278 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 378-174 chr17 68549909 68550050 + 3 NA intron (NM_017565, intron 4 of 10) intron (NM_017565, intron 4 of 10) 8448 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 425-44 chr10 108197567 108197793 + 3 NA Intergenic L1MA7|LINE|L1 -128387 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 153-105 chrX 111900490 111900573 + 3 NA intron (NM_001195578, intron 3 of 3) intron (NM_001195578, intron 3 of 3) 18634 NM_001195577 100329135 Hs.247868 NM_001195576 ENSG00000204025 TRPC5OS TRPC5-AS1 TRPC5 opposite strand protein-coding 867 chr1 40513091 40513561 + 3 NA intron (NM_001346951, intron 2 of 2) intron (NM_001346951, intron 2 of 2) 4607 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 619-29 chr11 58249363 58249598 + 3 NA Intergenic L1PA13|LINE|L1 18780 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 520-99 chr15 85354841 85355034 + 3 NA Intergenic Intergenic -25659 NR_106993 102465803 NR_106993 ENSG00000284160 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 367-469 chr8 138353722 138353945 + 3 NA intron (NM_015912, intron 2 of 19) L2|LINE|L2 143428 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 412-287 chr6 128991695 128991912 + 3 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 108662 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 886-15 chr2 48092982 48093640 + 3 NA Intergenic Intergenic -187518 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 496-48 chr11 78791450 78791659 + 3 NA intron (NM_001098816, intron 15 of 33) L2b|LINE|L2 -216690 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 702-67 chr3 151009530 151009955 + 3 NA intron (NR_024066, intron 1 of 5) intron (NR_024066, intron 1 of 5) -36743 NM_001195794 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 572-119 chr4 30576913 30577208 + 3 NA Intergenic Intergenic -143309 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 359-226 chr2 35634213 35634410 + 3 NA Intergenic Intergenic 162906 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 559-60 chr16 9358162 9358515 + 3 NA intron (NR_135195, intron 1 of 2) intron (NR_135195, intron 1 of 2) 2750 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 344-224 chr2 13921325 13921485 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 479553 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 544-95 chr18 68182097 68182292 + 3 NA Intergenic Intergenic -367372 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 506-12 chr1 115121988 115122176 + 3 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -32579 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 481-298 chr8 114058949 114059211 + 3 NA Intergenic L1M2|LINE|L1 -622141 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 278-24 chr1 240647224 240647360 + 3 NA Intergenic Intergenic -35137 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 263-363 chr6 88335487 88335661 + 3 NA Intergenic L1MC5|LINE|L1 -168225 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 246-217 chr2 199867549 199867697 + 3 NA Intergenic Intergenic -16450 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 365-351 chr6 66702797 66703022 + 3 NA Intergenic MER84-int|LTR|ERV1 915030 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 517-180 chr3 123836063 123836308 + 3 NA intron (NM_001321309, intron 2 of 32) MER39B|LTR|ERV1 48147 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 852-20 chr18 7844511 7845108 + 3 NA intron (NM_002845, intron 2 of 30) MLT1G3-int|LTR|ERVL-MaLR 277493 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 675-82 chr6 143223488 143223792 + 3 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 58858 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 468-329 chr8 136057476 136057652 + 3 NA Intergenic L1MB2|LINE|L1 -473234 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 504-197 chr4 107285512 107285716 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -249301 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 492-60 chr12 37981422 37981613 + 3 NA Intergenic ALR/Alpha|Satellite|centr -335257 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 388-29 chr1 197140638 197140795 + 3 NA intron (NM_001206846, intron 3 of 26) L2c|LINE|L2 5953 NM_018136 259266 Hs.121028 NM_018136 ENSG00000066279 ASPM ASP|Calmbp1|MCPH5 abnormal spindle microtubule assembly protein-coding 984-9 chr4 68260805 68261262 + 3 NA Intergenic MER41-int|LTR|ERV1 -15339 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 908-15 chr19 51972479 51972903 + 3 NA intron (NM_021632, intron 2 of 4) (AT)n|Simple_repeat|Simple_repeat 14149 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 357-116 chr14 60582901 60583064 + 3 NA Intergenic L1MEd|LINE|L1 -56234 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 437-140 chr2 108952124 108952309 + 3 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 37004 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 782-15 chr12 34633133 34633471 + 3 NA Intergenic ALR/Alpha|Satellite|centr 610806 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 765-64 chr8 119173349 119173932 + 3 NA Intergenic Intergenic -34723 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 584-30 chr11 114975504 114975764 + 3 NA Intergenic Intergenic 297107 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 506-262 chr7 3070848 3071022 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -27068 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 623-38 chr15 83042008 83042272 + 3 NA intron (NM_001011885, intron 3 of 6) intron (NM_001011885, intron 3 of 6) 25112 NM_025238 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 765-55 chr5 37649031 37649408 + 3 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 185603 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 624-73 chr2 238747563 238747960 + 3 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 100146 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 563-33 chr11 86539476 86539797 + 3 NA intron (NM_001014811, intron 3 of 13) intron (NM_001014811, intron 3 of 13) 132562 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 460-295 chr8 118537057 118537306 + 3 NA intron (NM_001101676, intron 2 of 4) L1M1|LINE|L1 -83820 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 619-78 chr21 22003361 22003727 + 3 NA Intergenic Intergenic 94915 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 323-161 chr15 37423702 37423838 + 3 NA Intergenic Intergenic -322459 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 330-53 chr10 22172081 22172221 + 3 NA Intergenic Intergenic 37832 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 1184-7 chr8 139817364 139817995 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -114556 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 498-64 chr12 34555178 34555466 + 3 NA Intergenic ALR/Alpha|Satellite|centr 532826 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 435-186 chr5 18857458 18857670 + 3 NA Intergenic Intergenic 1028708 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 457-48 chr12 37902332 37902700 + 3 NA Intergenic ALR/Alpha|Satellite|centr -414258 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 751 chr1 17758214 17758636 + 3 NA intron (NM_030812, intron 1 of 2) ERVL-E-int|LTR|ERVL 3092 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 775-30 chr15 87385262 87385620 + 3 NA Intergenic Intergenic -191488 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 319-545 chr8 118498083 118498308 + 3 NA intron (NM_001101676, intron 2 of 4) Helitron1Na_Mam|RC|Helitron -122806 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 532-143 chr20 42180050 42180368 + 3 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -505274 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 240-20 chr1 178279630 178279736 + 3 NA intron (NM_170692, intron 1 of 17) Charlie1a|DNA|hAT-Charlie -61768 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 466-154 chr2 226904786 226905085 + 3 NA intron (NM_001349069, intron 5 of 8) intron (NM_001349069, intron 5 of 8) 68881 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 380-51 chr10 85803917 85804072 + 3 NA intron (NM_017551, intron 8 of 15) L1ME2|LINE|L1 226263 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 232-400 chr9 80556835 80556930 + 3 NA Intergenic Intergenic 581859 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1630-3 chr5 46071605 46072507 + 3 NA Intergenic ALR/Alpha|Satellite|centr -375676 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 338-19 chr1 101077252 101077412 + 3 NA intron (NR_109849, intron 2 of 4) intron (NR_109849, intron 2 of 4) 51486 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 448-296 chr9 31892456 31892749 + 3 NA Intergenic MIRb|SINE|MIR -492001 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 745-8 chr11 42319427 42319859 + 3 NA Intergenic MIRc|SINE|MIR -65953 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 489-122 chr2 7530040 7530338 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 108928 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 819-32 chr7 42555954 42556383 + 3 NA Intergenic L2a|LINE|L2 150279 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 254-85 chr12 73009592 73009743 + 3 NA Intergenic LTR5_Hs|LTR|ERVK -149523 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 624-102 chr5 100979510 100979734 + 3 NA Intergenic L1MEc|LINE|L1 -76340 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 488-33 chr10 97195464 97195795 + 3 NA intron (NR_037909, intron 11 of 14) intron (NR_037909, intron 11 of 14) -9670 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 534-44 chr11 50377841 50378141 + 3 NA Intergenic ALR/Alpha|Satellite|centr -31156 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 510-253 chr6 160295427 160295754 + 3 NA Intergenic MIRc|SINE|MIR -36769 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 465-204 chr4 76294416 76294591 + 3 NA intron (NM_001242939, intron 6 of 6) MER63D|DNA|hAT-Blackjack -11523 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 471-249 chr7 22710912 22711145 + 3 NA Intergenic Intergenic -16172 NM_001371096 329-174 chr15 23769550 23769694 + 3 NA Intergenic L1MC3|LINE|L1 -82317 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 495-130 chr20 5497314 5497614 + 3 NA non-coding (NR_015406, exon 2 of 2) non-coding (NR_015406, exon 2 of 2) 7132 NR_015406 149837 Hs.123609 NR_015406 ENSG00000205181 LINC00654 - long intergenic non-protein coding RNA 654 ncRNA 907-23 chr5 117722736 117723200 + 3 NA Intergenic L1M3|LINE|L1 -7393 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 509-32 chr10 121713221 121713480 + 3 NA Intergenic Intergenic -114892 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 563-111 chr21 22846093 22846401 + 3 NA Intergenic LTR25-int|LTR|ERV1 -233037 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 729-64 chr5 87833824 87834130 + 3 NA Intergenic Intergenic 171935 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 378-210 chr2 7299428 7299574 + 3 NA Intergenic Intergenic -121760 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 487-253 chr6 139613524 139613729 + 3 NA Intergenic L1M5|LINE|L1 -139030 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 505-286 chr7 52516621 52516797 + 3 NA Intergenic L1M3c|LINE|L1 -518924 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 520-120 chr17 70037104 70037365 + 3 NA Intergenic Intergenic -14037 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 637-116 chr8 91532765 91533100 + 3 NA Intergenic MIRb|SINE|MIR 283613 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 422-82 chr14 63296695 63296869 + 3 NA Intergenic Intergenic 22153 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 714-34 chr2 24756801 24757184 + 3 NA intron (NM_001362950, intron 20 of 23) intron (NM_001362950, intron 20 of 23) -36123 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 439-243 chr6 19558883 19559130 + 3 NA Intergenic Intergenic 109185 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 743-88 chr8 136698887 136699195 + 3 NA intron (NR_147196, intron 2 of 5) L1PA15|LINE|L1 168243 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 624-128 chr9 24788808 24789055 + 3 NA Intergenic Intergenic -243034 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 504-145 chr2 216965823 216966012 + 3 NA Intergenic LTR33|LTR|ERVL 95145 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 513-11 chr1 166514821 166515019 + 3 NA Intergenic L1MEf|LINE|L1 -24881 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 520-146 chr2 79601646 79601944 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 47564 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 702-109 chr9 32328990 32329384 + 3 NA Intergenic L1MA4|LINE|L1 -55416 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 799-56 chr9 29083638 29084078 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 128441 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 474-84 chr14 68426646 68426942 + 3 NA intron (NM_133509, intron 9 of 10) MSTD-int|LTR|ERVL-MaLR 201993 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 668-77 chr5 3165944 3166519 + 3 NA Intergenic Intergenic -11604 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 412-53 chr11 60096146 60096400 + 3 NA 3' UTR (NM_001256916, exon 6 of 6) 3' UTR (NM_001256916, exon 6 of 6) 7609 NM_001256916 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 446-132 chr18 38945097 38945374 + 3 NA Intergenic Intergenic 676940 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 585-57 chr17 58171253 58171556 + 3 NA TTS (NM_001004707) TTS (NM_001004707) 1748 NM_001004707 124538 Hs.446879 NM_001004707 ENSG00000255713 OR4D2 BC2009|OR17-24 olfactory receptor family 4 subfamily D member 2 protein-coding 788-21 chr15 37548952 37549298 + 3 NA Intergenic Intergenic -385482 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 473-291 chr9 16127547 16127790 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 125439 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 451-194 chr6 27925598 27925813 + 3 NA Intergenic AluSx|SINE|Alu -13309 NM_033057 81697 Hs.307111 NM_033057 ENSG00000168131 OR2B2 OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10 olfactory receptor family 2 subfamily B member 2 protein-coding 766-52 chr3 161420870 161421205 + 3 NA Intergenic L2a|LINE|L2 -5390 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 431-146 chr2 139860700 139860877 + 3 NA Intergenic L1MB2|LINE|L1 725897 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 521-107 chr18 72132767 72133080 + 3 NA Intergenic L1MC5|LINE|L1 -350697 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 816-49 chr8 135005155 135005661 + 3 NA Intergenic Intergenic 155473 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 474-242 chr5 118634004 118634174 + 3 NA Intergenic L1MCa|LINE|L1 37901 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 483-197 chr5 13321473 13321667 + 3 NA Intergenic Intergenic -288684 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 330-548 chr9 25249321 25249463 + 3 NA Intergenic L1M4c|LINE|L1 429466 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 413-276 chr7 46719690 46719852 + 3 NA Intergenic Intergenic -22649 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 387-10 chr1 110175569 110175729 + 3 NA intron (NM_001010898, intron 5 of 11) MIR3|SINE|MIR 25155 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 887-11 chr17 52599044 52599557 + 3 NA Intergenic Intergenic 208778 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 296-243 chr2 149974005 149974124 + 3 NA Intergenic Intergenic -114873 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 502-285 chr8 140032860 140033118 + 3 NA intron (NM_001160372, intron 17 of 22) L1ME4b|LINE|L1 67546 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 481-49 chr11 25106384 25106684 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 609481 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 621-108 chr6 27058809 27059259 + 3 NA Intergenic Intergenic -38728 NR_026776 100270746 Hs.590428 NR_026776 LOC100270746 - uncharacterized LOC100270746 ncRNA 941-4 chr10 115893010 115893372 + 3 NA intron (NM_207303, intron 28 of 28) L2|LINE|L2 301598 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 908-8 chr15 59554789 59555120 + 3 NA Intergenic Intergenic -56829 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 1246-4 chr17 51961221 51961810 + 3 NA intron (NM_001082533, intron 3 of 9) L1MEf|LINE|L1 197199 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 457-16 chr1 168718034 168718228 + 3 NA intron (NM_001937, intron 1 of 3) intron (NM_001937, intron 1 of 3) 11075 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 466-199 chr5 35633384 35633628 + 3 NA intron (NM_144722, intron 2 of 9) L1M4|LINE|L1 15643 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 483-252 chr7 89059776 89060087 + 3 NA intron (NM_181646, intron 1 of 3) Ricksha_c|DNA|MULE-MuDR -264194 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 290-213 chr2 88839833 88839949 + 3 NA Intergenic Intergenic 27521 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 486-268 chr6 169964539 169964728 + 3 NA intron (NR_027434, intron 1 of 2) intron (NR_027434, intron 1 of 2) 2010 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 741-37 chr22 24715708 24716067 + 3 NA Intergenic L1MEg|LINE|L1 -48614 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 598-68 chr19 58036492 58036739 + 3 NA intron (NM_182572, intron 2 of 5) AluSx|SINE|Alu 2590 NM_182572 284312 Hs.643437 NM_182572 ENSG00000152467 ZSCAN1 MZF-1|ZNF915 zinc finger and SCAN domain containing 1 protein-coding 381-372 chr8 14329430 14329750 + 3 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 523920 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 522-245 chr8 19709412 19709603 + 3 NA intron (NR_148898, intron 1 of 9) L2a|LINE|L2 -26746 NR_024040 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 555-14 chr10 9771380 9771723 + 3 NA Intergenic L1M4c|LINE|L1 -287171 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 982-6 chr10 125619440 125619892 + 3 NA intron (NM_001318133, intron 3 of 3) AluSg|SINE|Alu 45295 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 977-15 chr7 35378293 35378835 + 3 NA Intergenic Intergenic 64709 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 766-23 chr16 68613695 68614114 + 3 NA Intergenic L1ME4b|LINE|L1 -31406 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 596-56 chr13 101174780 101175003 + 3 NA intron (NM_001350749, intron 15 of 43) intron (NM_001350749, intron 15 of 43) -230527 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 447-20 chr10 9652624 9652801 + 3 NA Intergenic Intergenic -357119 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 839-53 chr8 126631201 126631733 + 3 NA Intergenic Intergenic -72989 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 392-126 chr18 65220217 65220446 + 3 NA Intergenic Intergenic -529921 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 779-59 chr9 91234730 91235102 + 3 NA intron (NM_001698, intron 6 of 9) L2b|LINE|L2 115854 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 323-136 chr14 35088201 35088431 + 3 NA intron (NM_017917, intron 11 of 12) intron (NM_017917, intron 11 of 12) 7235 NR_110415 101927178 Hs.617139 NR_110415 ENSG00000151327 LOC101927178 - uncharacterized LOC101927178 ncRNA 593-50 chr15 83079947 83080277 + 3 NA Intergenic Intergenic 12777 NR_039740 100616404 NR_039740 ENSG00000263643 MIR4515 mir-4515 microRNA 4515 ncRNA 356-146 chr14 57576099 57576307 + 3 NA intron (NM_001306087, intron 4 of 7) intron (NM_001306087, intron 4 of 7) -82346 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 317-428 chr6 139861209 139861387 + 3 NA TTS (NR_038399) TTS (NR_038399) 6448 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 361-277 chr3 29659769 29659915 + 3 NA intron (NM_001003792, intron 4 of 13) L1MB3|LINE|L1 274314 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 306-270 chr2 238583799 238583962 + 3 NA Intergenic L1MCa|LINE|L1 -28381 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 355-278 chr20 8622628 8622774 + 3 NA intron (NM_182734, intron 3 of 32) LTR16C|LTR|ERVL -208484 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 478-106 chr16 53563949 53564176 + 3 NA Intergenic Intergenic -60758 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 695-47 chr2 44907883 44908278 + 3 NA Intergenic Intergenic 30808 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 1011-8 chr11 42967841 42968339 + 3 NA Intergenic Intergenic 301279 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 500-314 chr9 28520677 28520938 + 3 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 198498 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 228-142 chr18 44274562 44274672 + 3 NA Intergenic Intergenic 257080 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 758-17 chr11 110470381 110470898 + 3 NA Intergenic L2a|LINE|L2 40691 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 704-25 chr14 47669728 47670189 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 4996 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 883-15 chr19 6978353 6978849 + 3 NA intron (NR_024075, intron 6 of 15) L1M5|LINE|L1 12245 NR_024075 326342 Hs.688043 NM_001080498 ENSG00000268758 ADGRE4P EMR4|EMR4P|FIRE|GPR127|PGR16 adhesion G protein-coupled receptor E4, pseudogene pseudo 345-42 chr1 242738118 242738280 + 3 NA Intergenic L1ME3A|LINE|L1 -213502 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 1206-9 chr7 8076404 8077089 + 3 NA intron (NM_138426, intron 6 of 7) L2a|LINE|L2 107950 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 761-79 chr9 119771403 119771919 + 3 NA Intergenic L2c|LINE|L2 -163399 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 502-130 chr2 17571793 17572111 + 3 NA intron (NM_001366806, intron 1 of 3) L2a|LINE|L2 31256 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 1060-2 chr10 43545437 43546027 + 3 NA Intergenic Intergenic 22727 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 504-51 chr12 18056310 18056653 + 3 NA Intergenic Intergenic 33712 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 558-87 chr19 37414313 37414562 + 3 NA intron (NM_001330482, intron 4 of 4) intron (NM_001330482, intron 4 of 4) 43338 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 376-221 chr20 50441145 50441339 + 3 NA Intergenic MIR|SINE|MIR -69079 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 470-130 chr2 79780533 79780726 + 3 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 85954 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 800-32 chr2 106007399 106007779 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -58099 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 301-74 chr11 85110115 85110273 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -186773 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 497-31 chr10 115984267 115984591 + 3 NA Intergenic L1ME1|LINE|L1 210360 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 418-31 chr10 95745811 95746017 + 3 NA intron (NM_001098175, intron 1 of 9) intron (NM_001098175, intron 1 of 9) -9738 NM_001164181 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 392-162 chr2 173548140 173548371 + 3 NA Intergenic Intergenic 193383 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 517-188 chr4 33517685 33517993 + 3 NA Intergenic Intergenic 522054 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 792-37 chr21 26493604 26494139 + 3 NA intron (NM_052954, intron 2 of 3) intron (NM_052954, intron 2 of 3) 79415 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 323-321 chr3 25128212 25128366 + 3 NA intron (NM_001290216, intron 3 of 10) MIRb|SINE|MIR -212513 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 565-65 chr18 78117670 78118038 + 3 NA Intergenic L1MA6|LINE|L1 -124127 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 888-26 chr20 42076411 42076903 + 3 NA 3' UTR (NM_007050, exon 31 of 31) 3' UTR (NM_007050, exon 31 of 31) -458280 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 487-242 chr5 162244326 162244571 + 3 NA Intergenic Intergenic 176806 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 518-305 chr8 134471379 134471568 + 3 NA Intergenic MIR3|SINE|MIR -126598 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 524-227 chr7 10354168 10354360 + 3 NA Intergenic L1MA2|LINE|L1 -348412 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 739-26 chr17 5094695 5095098 + 3 NA 3' UTR (NM_153018, exon 2 of 2) 3' UTR (NM_153018, exon 2 of 2) 16429 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 571-131 chr5 35604158 35604504 + 3 NA Intergenic L1PB2|LINE|L1 -13532 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 575-121 chr3 100980759 100981003 + 3 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 12609 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 585-125 chr5 58968255 58968553 + 3 NA TTS (NM_001197219) TTS (NM_001197219) 31494 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 418-212 chr5 45990553 45990773 + 3 NA Intergenic ALR/Alpha|Satellite|centr -294283 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 827-59 chr9 29127786 29128122 + 3 NA intron (NM_001354574, intron 1 of 5) LOR1-int|LTR|ERV1 84345 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 670-31 chr12 130593906 130594167 + 3 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 34420 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 423-275 chr7 86369866 86370148 + 3 NA Intergenic L1MA8|LINE|L1 -273902 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 491-158 chr22 36691972 36692154 + 3 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 10795 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 647-103 chr8 137269725 137270080 + 3 NA Intergenic L1PREC2|LINE|L1 143686 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 548-117 chr2 105995061 105995256 + 3 NA Intergenic MER21C|LTR|ERVL -70530 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 287-97 chr11 103981773 103981958 + 3 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -54775 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 513-228 chr5 110839680 110839922 + 3 NA Intergenic L1ME3|LINE|L1 100794 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 994-8 chr2 49530432 49531021 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -376199 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 467-76 chr14 43166313 43166492 + 3 NA Intergenic Intergenic 1340881 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 573-166 chr6 77319236 77319663 + 3 NA Intergenic Intergenic 144573 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 849-2 chr10 30772267 30772849 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR 49339 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 311-551 chr9 131942267 131942417 + 3 NA intron (NM_001253881, intron 3 of 6) intron (NM_001253881, intron 3 of 6) 137525 NM_001253882 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 681-60 chr4 100058647 100058906 + 3 NA Intergenic LTR16B|LTR|ERVL 108282 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 677-2 chr1 29493569 29493991 + 3 NA Intergenic L1MB2|LINE|L1 -143666 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 315-55 chr10 59065615 59065801 + 3 NA Intergenic Intergenic 66190 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 567-36 chr11 98977315 98977621 + 3 NA Intergenic L1PB1|LINE|L1 -43481 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 370-271 chr20 39889377 39889544 + 3 NA Intergenic Intergenic -115001 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 522-258 chr8 123994947 123995295 + 3 NA intron (NM_001039112, intron 12 of 40) L1PB3|LINE|L1 45661 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 641-2 chr1 59379389 59379775 + 3 NA intron (NM_001350794, intron 5 of 14) Tigger3b|DNA|TcMar-Tigger 69550 NM_001350790 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 603-28 chr12 6582113 6582477 + 3 NA promoter-TSS (NR_003012) promoter-TSS (NR_003012) -686 NR_003012 677780 Hs.689692 NR_003012 ENSG00000251898 SCARNA11 ACA57 small Cajal body-specific RNA 11 ncRNA 491-234 chr6 164291091 164291310 + 3 NA Intergenic Intergenic 530863 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 828-28 chr2 193635145 193635492 + 3 NA Intergenic L1M1|LINE|L1 -708951 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 576-119 chr4 68305597 68305905 + 3 NA Intergenic Intergenic 44339 NM_001330698 91746 Hs.175955 NM_133370 ENSG00000083896 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 523-114 chr18 66639212 66639470 + 3 NA Intergenic Intergenic -35251 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 360-79 chr12 11549956 11550114 + 3 NA intron (NR_033890, intron 2 of 7) L2a|LINE|L2 2005 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 479-116 chr2 211081374 211081592 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR 463912 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 512-263 chr8 5927818 5928038 + 3 NA Intergenic L1MEg1|LINE|L1 478620 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 471-227 chr6 63246733 63247055 + 3 NA Intergenic Intergenic 73083 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 531-269 chr9 108367998 108368218 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 487878 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 517-63 chr12 129683758 129684041 + 3 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 220126 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 519-101 chr2 41204145 41204351 + 3 NA Intergenic Intergenic -673307 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 964-22 chr3 103743955 103744625 + 3 NA Intergenic Intergenic -220174 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 767-53 chr7 111362771 111363171 + 3 NA intron (NM_032549, intron 3 of 5) Charlie2a|DNA|hAT-Charlie 199320 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 512-89 chr15 66914149 66914372 + 3 NA Intergenic Intergenic 42255 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 525-144 chr21 27054725 27055066 + 3 NA Intergenic HERVL-int|LTR|ERVL -87807 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 443 chr1 40003028 40003289 + 3 NA Intergenic Intergenic -36907 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 699-57 chr2 208335438 208335876 + 3 NA intron (NM_015040, intron 25 of 41) intron (NM_015040, intron 25 of 41) -24035 NM_001309516 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 557-120 chr20 17765686 17766011 + 3 NA Intergenic Intergenic 65900 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 520-136 chr19 52067138 52067323 + 3 NA exon (NM_001352298, exon 6 of 6) exon (NM_001352298, exon 6 of 6) -18392 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 309-133 chr13 83340459 83340627 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR 541850 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 455-250 chr6 140631379 140631600 + 3 NA Intergenic Intergenic -52325 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 411-104 chr15 88354095 88354293 + 3 NA Intergenic HAL1|LINE|L1 -97455 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 289-71 chr10 110069059 110069239 + 3 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -60768 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 929-3 chr10 43953832 43954473 + 3 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 41750 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 501-80 chr17 30037781 30038018 + 3 NA intron (NR_026738, intron 8 of 15) Tigger1|DNA|TcMar-Tigger -78908 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 696-28 chr12 29412357 29412795 + 3 NA intron (NR_073172, intron 1 of 1) intron (NR_073172, intron 1 of 1) 23282 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 698-29 chr17 71075440 71075891 + 3 NA Intergenic MIR|SINE|MIR 126514 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 617-126 chr8 16992620 16993022 + 3 NA 3' UTR (NM_019851, exon 3 of 3) 3' UTR (NM_019851, exon 3 of 3) 9524 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 645-103 chr5 159303199 159303587 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 27080 NM_002187 3593 Hs.674 NM_002187 ENSG00000113302 IL12B CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2 interleukin 12B protein-coding 429-216 chr4 132940824 132940977 + 3 NA Intergenic L1M2a|LINE|L1 208216 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 750-11 chr11 56666547 56666866 + 3 NA Intergenic L1MA1|LINE|L1 3020 NM_001004730 219493 Hs.553633 NM_001004730 ENSG00000172459 OR5AR1 OR11-209 olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene) protein-coding 281-117 chr14 60231887 60232033 + 3 NA Intergenic L1M4|LINE|L1 -13790 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 392-336 chr8 127227267 127227520 + 3 NA Intergenic MIR|SINE|MIR -8125 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLO5|CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 ncRNA 281-278 chr3 6850858 6851027 + 3 NA Intergenic L1MEc|LINE|L1 -10173 NM_000844 2917 Hs.606393 NM_000844 ENSG00000196277 GRM7 GLUR7|GPRC1G|MGLU7|MGLUR7|PPP1R87 glutamate metabotropic receptor 7 protein-coding 788-48 chr8 56237846 56238330 + 3 NA Intergenic Intergenic 26299 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 426-292 chr8 79003611 79003849 + 3 NA Intergenic L1ME3F|LINE|L1 166201 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 731-5 chr1 190980699 190981068 + 3 NA Intergenic L3b|LINE|CR1 247615 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 550-185 chr5 104605203 104605442 + 3 NA Intergenic Intergenic -494152 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 466-263 chr8 51864092 51864296 + 3 NA intron (NM_001363193, intron 1 of 5) L1MA6|LINE|L1 34842 NM_001363193 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 628-56 chr17 73923377 73923723 + 3 NA Intergenic L1MEd|LINE|L1 -95013 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 713-77 chr8 46540747 46541167 + 3 NA Intergenic ALR/Alpha|Satellite|centr 76686 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 592-112 chr3 84528537 84528895 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 340859 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 349-386 chr4 129588145 129588303 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 183254 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 931-21 chr5 125255126 125255688 + 3 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 218576 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 451-77 chr14 86916498 86916781 + 3 NA intron (NR_038445, intron 3 of 4) MIR|SINE|MIR 10861 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 714-70 chr8 60158474 60158802 + 3 NA Intergenic L1PBa1|LINE|L1 122762 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 645-6 chr1 82935112 82935487 + 3 NA intron (NR_147074, intron 2 of 10) intron (NR_147074, intron 2 of 10) 32116 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 520-35 chr10 67124006 67124195 + 3 NA intron (NM_001127384, intron 7 of 17) MER5A|DNA|hAT-Charlie 111834 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 326-543 chr8 109263539 109263710 + 3 NA intron (NM_032869, intron 8 of 9) intron (NM_032869, intron 8 of 9) 66309 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 410-316 chr8 131707112 131707263 + 3 NA Intergenic Intergenic -196906 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 1291-3 chr19 37484847 37485366 + 3 NA exon (NM_001321992, exon 4 of 4) exon (NM_001321992, exon 4 of 4) 15535 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 225-170 chr2 191411271 191411411 + 3 NA intron (NM_012223, intron 25 of 28) intron (NM_012223, intron 25 of 28) 165937 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 1170-7 chr8 87014558 87015135 + 3 NA intron (NM_173538, intron 4 of 10) MER4B-int|LTR|ERV1 148431 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 680-18 chr10 47201687 47202171 + 3 NA Intergenic Intergenic -98268 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 782-62 chr7 50223033 50223425 + 3 NA Intergenic L1MB5|LINE|L1 -80835 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 556-198 chr6 160823266 160823555 + 3 NA Intergenic Intergenic 121217 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 467-250 chr6 65217735 65217949 + 3 NA intron (NM_001292009, intron 12 of 43) L2a|LINE|L2 -83576 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 517-56 chr12 31909848 31910122 + 3 NA Intergenic Intergenic -22782 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 787-25 chr20 54081966 54082437 + 3 NA Intergenic Intergenic -11436 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 669-77 chr4 37482848 37483219 + 3 NA intron (NM_001104629, intron 1 of 3) THE1C|LTR|ERVL-MaLR 29108 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 478-17 chr1 221063300 221063485 + 3 NA Intergenic L1MDa|LINE|L1 -183252 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 752-80 chr9 29564768 29565187 + 3 NA Intergenic Intergenic -351376 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 496-135 chr2 76436043 76436251 + 3 NA Intergenic L1ME3A|LINE|L1 -549818 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 560-53 chr15 27395274 27395584 + 3 NA intron (NM_001270873, intron 5 of 5) L1ME1|LINE|L1 -234110 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 296-451 chr7 146449278 146449469 + 3 NA Intergenic L1MDa|LINE|L1 -324898 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 379-40 chr10 62173361 62173505 + 3 NA Intergenic L1P1|LINE|L1 95411 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 535-91 chr15 91814731 91815043 + 3 NA Intergenic Intergenic -38821 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 614-110 chr6 103754382 103754782 + 3 NA Intergenic Intergenic 1104964 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 400-334 chr8 52066169 52066423 + 3 NA Intergenic L1PB1|LINE|L1 -128066 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 295-122 chr14 20223660 20223811 + 3 NA promoter-TSS (NM_001004480) promoter-TSS (NM_001004480) 25 NM_001004480 122748 Hs.553575 NM_001004480 ENSG00000176219 OR11H6 - olfactory receptor family 11 subfamily H member 6 protein-coding 382-26 chr1 238968056 238968280 + 3 NA Intergenic Intergenic -418400 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 484-264 chr8 86202372 86202672 + 3 NA Intergenic Intergenic 27859 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 680-99 chr5 152096089 152096529 + 3 NA intron (NR_109876, intron 1 of 2) L2a|LINE|L2 137411 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 781-28 chr19 37410136 37410559 + 3 NA TTS (NM_001330482) TTS (NM_001330482) 39248 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 431-31 chr1 240531196 240531496 + 3 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 80809 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 710-69 chr4 30668989 30669462 + 3 NA Intergenic Intergenic -51144 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 511-123 chr2 105602862 105603208 + 3 NA intron (NR_038891, intron 1 of 3) L1MC1|LINE|L1 7524 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 372-149 chr14 67230251 67230388 + 3 NA Intergenic AluJo|SINE|Alu -11116 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 437-29 chr10 101174477 101174707 + 3 NA Intergenic L1MEh|LINE|L1 -1730 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 567-103 chr21 30032626 30032964 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -92743 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 653-98 chr5 42340852 42341182 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -82422 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 496-29 chr10 19529938 19530144 + 3 NA intron (NM_001142308, intron 31 of 39) L1MCa|LINE|L1 198509 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 426-74 chr14 83785232 83785489 + 3 NA Intergenic L1ME3|LINE|L1 1142728 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 634-92 chr21 20130757 20131220 + 3 NA Intergenic Intergenic 127697 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 623-16 chr10 106875160 106875666 + 3 NA intron (NM_001206569, intron 2 of 25) L1PB3|LINE|L1 289293 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 574-160 chr7 8475815 8476033 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 42315 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 340-340 chr21 46583303 46583516 + 3 NA Intergenic L1M4b|LINE|L1 21673 NM_006272 6285 Hs.422181 NM_006272 ENSG00000160307 S100B NEF|S100|S100-B|S100beta S100 calcium binding protein B protein-coding 372-75 chr11 78997957 78998097 + 3 NA intron (NM_001098816, intron 6 of 33) MLT1A|LTR|ERVL-MaLR 404082 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 369-268 chr3 96257435 96257587 + 3 NA Intergenic Intergenic -102453 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 1188-11 chr8 123944076 123944699 + 3 NA intron (NM_001039112, intron 1 of 40) MIRc|SINE|MIR 92400 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 234-275 chr4 70130704 70130825 + 3 NA Intergenic Intergenic -2840 NR_033311 100337616 Hs.729824 NR_033311 CSN1S2BP CSN1S2B casein alpha s2 like B, pseudogene pseudo 628-69 chr2 65997431 65997743 + 3 NA Intergenic AluJb|SINE|Alu 360741 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 579-64 chr2 4800135 4800394 + 3 NA Intergenic L1ME1|LINE|L1 -144042 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 505-80 chr14 51378548 51378747 + 3 NA Intergenic L1ME4c|LINE|L1 18488 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 381-166 chr19 37515569 37515724 + 3 NA intron (NM_001013659, intron 2 of 7) L1M5|LINE|L1 -8559 NR_110723 101927720 Hs.18070 NR_110723 ENSG00000266916 ZNF793-AS1 - ZNF793 antisense RNA 1 (head to head) ncRNA 714-9 chr10 53643637 53644019 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -842402 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 637-16 chr10 36629203 36629547 + 3 NA Intergenic Intergenic -496482 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 413-298 chr8 46344060 46344256 + 3 NA Intergenic ALR/Alpha|Satellite|centr 273485 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 350-451 chr6 132692882 132693025 + 3 NA intron (NM_004666, intron 4 of 6) intron (NM_004666, intron 4 of 6) 21102 NM_004666 8876 Hs.12114 NM_004666 ENSG00000112299 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 505-134 chr2 27979217 27979406 + 3 NA intron (NM_199193, intron 4 of 13) AluSx|SINE|Alu -17056 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 704-51 chr3 22630445 22630725 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie 571993 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 501-92 chr19 22467225 22467524 + 3 NA intron (NR_160728, intron 1 of 1) intron (NR_160728, intron 1 of 1) -45028 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 737-46 chr20 21895756 21896158 + 3 NA Intergenic Intergenic -158133 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 483-25 chr10 33571737 33572039 + 3 NA Intergenic Intergenic 200792 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 512-291 chr9 103575238 103575457 + 3 NA Intergenic L1MA4|LINE|L1 -250314 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 491-256 chr8 83202782 83203021 + 3 NA Intergenic (TTTTTA)n|Simple_repeat|Simple_repeat -200857 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 762-9 chr10 70039619 70039934 + 3 NA Intergenic HAL1|LINE|L1 -13070 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 732-40 chr19 53236733 53237162 + 3 NA 3' UTR (NM_182609, exon 5 of 5) 3' UTR (NM_182609, exon 5 of 5) 17903 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 515-22 chr10 30987887 30988246 + 3 NA intron (NM_001143766, intron 1 of 7) BLACKJACK|DNA|hAT-Blackjack 11451 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 335-525 chr8 31889137 31889310 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -136513 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 1140-14 chr9 81359908 81360585 + 3 NA Intergenic AluJb|SINE|Alu 329289 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 509-157 chr3 150190515 150190854 + 3 NA Intergenic L1MC1|LINE|L1 -47835 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 516-195 chr4 73826034 73826363 + 3 NA Intergenic Intergenic -10480 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 695-51 chr2 122103105 122103483 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR 347643 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 473-305 chrUn_KI270757v1 60100 60383 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 716-10 chr10 31165947 31166296 + 3 NA Intergenic L1M3c|LINE|L1 -21762 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 524-207 chr5 112443255 112443454 + 3 NA Intergenic Intergenic 23771 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 707-18 chr12 120432317 120432802 + 3 NA Intergenic Intergenic -5554 NM_004373 1337 Hs.369624 NM_004373 ENSG00000111775 COX6A1 CMTRID|COX6A|COX6AL cytochrome c oxidase subunit 6A1 protein-coding 584-98 chr3 33189294 33189772 + 3 NA intron (NM_015551, intron 3 of 4) L1MC5a|LINE|L1 29277 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 454-291 chr7 40678704 40678870 + 3 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 301152 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 205-60 chr11 112764067 112764170 + 3 NA Intergenic MIR|SINE|MIR -197302 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 340-294 chr2 187076926 187077139 + 3 NA Intergenic L1MC4a|LINE|L1 -227862 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 666-117 chr9 13598060 13598366 + 3 NA Intergenic Intergenic -166884 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 442-182 chr3 29170348 29170562 + 3 NA Intergenic MIR|SINE|MIR 110484 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 230-214 chr21 24398459 24398576 + 3 NA Intergenic Intergenic -30223 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 425-262 chr6 97851635 97851937 + 3 NA Intergenic Intergenic -172745 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 464-208 chr5 146991607 146991929 + 3 NA intron (NM_001271900, intron 2 of 10) L1M3|LINE|L1 64369 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 1236-7 chr8 89153683 89154153 + 3 NA Intergenic Intergenic 603793 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 493-83 chr14 52321626 52321840 + 3 NA intron (NM_000956, intron 1 of 1) MIRb|SINE|MIR 7421 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 340-307 chr20 8647914 8648075 + 3 NA intron (NM_182734, intron 6 of 32) intron (NM_182734, intron 6 of 32) -183191 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 752-39 chr2 78574329 78574750 + 3 NA Intergenic Intergenic 29008 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 255-340 chr5 127971378 127971536 + 3 NA intron (NR_152803, intron 1 of 1) intron (NR_152803, intron 1 of 1) 111718 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 525-52 chr12 15545356 15545618 + 3 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -1124 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 493-254 chr6 34436870 34437060 + 3 NA Intergenic LTR12D|LTR|ERV1 -10840 NM_001202470 100529239 Hs.188882 NM_001202470 ENSG00000270800 RPS10-NUDT3 - RPS10-NUDT3 readthrough protein-coding 501-47 chr12 18905537 18905836 + 3 NA Intergenic L3|LINE|CR1 167567 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 983-2 chr10 41761924 41762445 + 3 NA Intergenic ALR/Alpha|Satellite|centr 605861 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 319-415 chr5 77908375 77908620 + 3 NA intron (NR_105012, intron 1 of 1) intron (NR_105012, intron 1 of 1) 23841 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 497-91 chr17 35296068 35296343 + 3 NA Intergenic L1M2|LINE|L1 53133 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 590-66 chr18 64945877 64946136 + 3 NA Intergenic MER66-int|LTR|ERV1 -685951 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 687-93 chr5 80243018 80243321 + 3 NA intron (NR_126061, intron 1 of 13) intron (NR_126061, intron 1 of 13) 12879 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 250-47 chr10 81008472 81008555 + 3 NA Intergenic L1MEb|LINE|L1 358716 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 597-88 chr22 35667308 35667705 + 3 NA 3' UTR (NM_030641, exon 3 of 3) 3' UTR (NM_030641, exon 3 of 3) 19060 NM_030641 80830 Hs.257352 NM_030641 ENSG00000221963 APOL6 APOL-VI|APOLVI apolipoprotein L6 protein-coding 422-162 chr2 202118004 202118223 + 3 NA intron (NM_001277372, intron 11 of 23) intron (NM_001277372, intron 11 of 23) -1055 NR_135243 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 387-399 chrUn_KI270442v1 24216 24446 + 3 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 503-20 chr1 233964588 233964886 + 3 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 60061 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 671-101 chr8 101384965 101385317 + 3 NA Intergenic L1ME4a|LINE|L1 16248 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 466-293 chr9 118291263 118291475 + 3 NA Intergenic HAL1|LINE|L1 -388302 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 470-100 chr17 77669305 77669562 + 3 NA Intergenic L1MEc|LINE|L1 59126 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 556-189 chr6 44053935 44054180 + 3 NA intron (NR_125864, intron 1 of 4) intron (NR_125864, intron 1 of 4) 20595 NR_125864 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 640-55 chr19 56576503 56576833 + 3 NA intron (NM_001001668, intron 5 of 5) intron (NM_001001668, intron 5 of 5) 9200 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 470-18 chr10 7407788 7408043 + 3 NA intron (NM_001029880, intron 1 of 20) CpG 1426 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 217-338 chr6 163178956 163179062 + 3 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 12993 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 1386-6 chr8 89651538 89652410 + 3 NA Intergenic L1M2c|LINE|L1 105737 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 711-7 chr1 220946777 220947128 + 3 NA Intergenic Intergenic -66812 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 886-21 chr21 28602744 28603293 + 3 NA Intergenic LTR16A2|LTR|ERVL 63700 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 476 chr1 18829998 18830204 + 3 NA Intergenic AluJb|SINE|Alu 29560 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 386-242 chr3 104392868 104393003 + 3 NA Intergenic MER34|LTR|ERV1 -868819 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 620-67 chr2 138211184 138211574 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity 109495 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 878-42 chr7 15337860 15338341 + 3 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 223915 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 483-221 chr5 161452676 161452963 + 3 NA intron (NM_000813, intron 5 of 9) AluJb|SINE|Alu 95305 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 585-166 chr9 10298468 10298762 + 3 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 314387 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 547-256 chr8 139691962 139692372 + 3 NA intron (NR_104210, intron 1 of 3) MLT1J|LTR|ERVL-MaLR 10956 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 266-448 chr9 35745609 35745786 + 3 NA intron (NM_020944, intron 1 of 16) intron (NM_020944, intron 1 of 16) 3531 NM_001330660 57704 Hs.443134 NM_020944 ENSG00000070610 GBA2 AD035|NLGase|SPG46 glucosylceramidase beta 2 protein-coding 491-215 chr5 93024533 93024795 + 3 NA Intergenic Intergenic 546679 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 407-175 chr21 30380500 30380709 + 3 NA Intergenic L1ME1|LINE|L1 -5226 NR_036221 100422891 NR_036221 ENSG00000265007 MIR4327 - microRNA 4327 ncRNA 736-96 chrX 93971197 93971576 + 3 NA Intergenic Intergenic 297180 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 458-172 chr3 86685824 86686116 + 3 NA Intergenic L1MEg|LINE|L1 204027 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 371-105 chr14 56793099 56793330 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie 12453 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 220-25 chr1 192283214 192283363 + 3 NA Intergenic Intergenic -33704 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 762-7 chr10 39100750 39101035 + 3 NA Intergenic ALR/Alpha|Satellite|centr 404296 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 438-64 chr12 18587258 18587469 + 3 NA intron (NM_001288774, intron 29 of 32) L1PREC2|LINE|L1 150146 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 684-78 chr4 70780 71121 + 3 NA intron (NM_182524, intron 3 of 3) L1MA3|LINE|L1 17629 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 356-380 chr5 8497490 8497718 + 3 NA Intergenic L1M3c|LINE|L1 36679 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 668-68 chr3 114490910 114491249 + 3 NA intron (NR_121661, intron 1 of 2) L2b|LINE|L2 37486 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 476-202 chr4 144316151 144316501 + 3 NA Intergenic Intergenic -175608 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 367-56 chr10 84072816 84073058 + 3 NA Intergenic L1MA4A|LINE|L1 -66572 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 754-25 chr15 59958516 59958917 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -45595 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 365-423 chr9 30244658 30244834 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR 163708 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 446-61 chr11 42096901 42097115 + 3 NA Intergenic MIRb|SINE|MIR -11550 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 428-199 chr3 176187972 176188151 + 3 NA Intergenic Intergenic -56490 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 508-210 chr6 104191730 104191993 + 3 NA Intergenic L1PBb|LINE|L1 667685 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 814-59 chr8 68368604 68368892 + 3 NA intron (NR_146187, intron 1 of 13) L1MEd|LINE|L1 -37257 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 253-238 chr22 19635966 19636132 + 3 NA Intergenic L1MB3|LINE|L1 -69210 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 492-42 chr11 69164203 69164374 + 3 NA intron (NR_104161, intron 2 of 2) L1M5|LINE|L1 7274 NR_104161 338694 Hs.564235 NR_104161 ENSG00000261070 LOC338694 - uncharacterized LOC338694 ncRNA 1128-2 chr1 180734338 180735062 + 3 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) 102678 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 793-29 chr2 190921799 190922169 + 3 NA intron (NM_014905, intron 9 of 17) L1MC4|LINE|L1 41163 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 246-64 chr11 31118221 31118313 + 3 NA intron (NM_001367979, intron 11 of 38) intron (NM_001367979, intron 11 of 38) -125581 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 540-46 chr12 4211947 4212142 + 3 NA Intergenic Intergenic -61718 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 397-281 chr6 82761753 82761934 + 3 NA Intergenic L1MEi|LINE|L1 303998 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 547-88 chr19 12319691 12319895 + 3 NA exon (NM_001363608, exon 4 of 5) exon (NM_001363608, exon 4 of 5) 13840 NM_145276 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 633-30 chr12 30213553 30213818 + 3 NA Intergenic L2c|LINE|L2 -428926 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 651-42 chr15 38906508 38906960 + 3 NA Intergenic HAL1b|LINE|L1 210136 NR_160786 855-15 chr14 60197421 60198094 + 3 NA Intergenic L1MA3|LINE|L1 -27893 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 677-88 chr9 28370815 28371166 + 3 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 348315 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 250-151 chr16 82524340 82524460 + 3 NA Intergenic Intergenic -102569 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 527-240 chr7 16914597 16914877 + 3 NA Intergenic Intergenic -32754 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 447-237 chr6 144262261 144262471 + 3 NA Intergenic Intergenic -29371 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 452-145 chr2 188955460 188955726 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie -18780 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 616-17 chr10 76259053 76259412 + 3 NA intron (NM_001305581, intron 5 of 6) L1MA5A|LINE|L1 476471 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 222-382 chr8 138896175 138896266 + 3 NA intron (NM_152888, intron 1 of 64) L1MDa|LINE|L1 17821 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 1056-16 chr6 62654384 62655085 + 3 NA Intergenic Intergenic -368507 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 469-296 chr9 25260189 25260381 + 3 NA Intergenic Intergenic 418573 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 414-195 chr21 44385139 44385381 + 3 NA intron (NM_003307, intron 9 of 31) L1MB3|LINE|L1 31659 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 252-93 chr12 58684193 58684341 + 3 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 92565 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 575-139 chr4 115534033 115534307 + 3 NA Intergenic Intergenic -420550 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 690-58 chr2 104440601 104441093 + 3 NA intron (NR_015399, intron 1 of 3) intron (NR_015399, intron 1 of 3) 6500 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 397-285 chr6 126952617 126952827 + 3 NA Intergenic Intergenic -165949 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 712-9 chr1 209745777 209746314 + 3 NA Intergenic Charlie7a|DNA|hAT-Charlie -3483 NR_134510 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 433-132 chr2 80082377 80082615 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -215913 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 569-115 chr3 17558441 17558689 + 3 NA intron (NM_001349075, intron 1 of 22) intron (NM_001349075, intron 1 of 22) 141455 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 969-15 chr2 187155672 187156317 + 3 NA Intergenic MLT2D|LTR|ERVL 292258 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 655-78 chr3 22273482 22273794 + 3 NA Intergenic LTR37A|LTR|ERV1 316499 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 530-44 chr11 103353698 103353895 + 3 NA intron (NM_001377, intron 82 of 88) intron (NM_001377, intron 82 of 88) 244370 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 428-103 chr18 60393852 60394118 + 3 NA Intergenic Intergenic -21210 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 566-141 chr4 58712409 58712824 + 3 NA Intergenic Intergenic -176288 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 447-59 chr12 54178655 54178863 + 3 NA Intergenic Intergenic 10198 NM_001351250 23583 Hs.632721 NM_014311 ENSG00000123415 SMUG1 FDG|HMUDG|UNG3 single-strand-selective monofunctional uracil-DNA glycosylase 1 protein-coding 563-7 chr1 193825680 193826026 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 521108 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 724-90 chr7 27442764 27443108 + 3 NA Intergenic MER39|LTR|ERV1 -173038 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 182-133 chr5 20310673 20310754 + 3 NA intron (NR_146519, intron 1 of 1) intron (NR_146519, intron 1 of 1) 5162 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 1091-10 chr8 131383956 131384591 + 3 NA Intergenic Intergenic -343364 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 432-252 chr6 104321584 104321771 + 3 NA Intergenic Intergenic 537869 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 519-158 chr4 33597951 33598197 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 441819 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 511-275 chr9 28347647 28347879 + 3 NA intron (NM_001354574, intron 4 of 5) MER5B|DNA|hAT-Charlie 371542 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 506-45 chr10 116988636 116988918 + 3 NA intron (NM_001258300, intron 2 of 17) AluJr4|SINE|Alu 16410 NM_018330 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 436-46 chr11 48273302 48273572 + 3 NA Intergenic MIRb|SINE|MIR 9576 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 350-115 chr13 32622492 32622682 + 3 NA intron (NM_015032, intron 1 of 34) L1ME3A|LINE|L1 36135 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 511-203 chr5 9906779 9907044 + 3 NA Intergenic Intergenic -3087 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 627-41 chr18 4303929 4304307 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 39516 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 580-139 chr4 85224509 85224773 + 3 NA Intergenic L1PA16|LINE|L1 -250509 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 503-16 chr1 163195737 163196048 + 3 NA intron (NM_001254748, intron 2 of 5) MIRc|SINE|MIR 7024 NM_001195303 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 432-4 chr1 42302713 42303013 + 3 NA intron (NM_001198850, intron 2 of 12) intron (NM_001198850, intron 2 of 12) 32092 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 922-12 chr15 87451726 87452266 + 3 NA Intergenic Intergenic -124933 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 529-20 chr10 113694024 113694248 + 3 NA intron (NM_033338, intron 2 of 7) L1M3c|LINE|L1 14224 NM_033339 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 579-26 chr12 10019749 10019953 + 3 NA intron (NR_120484, intron 2 of 2) intron (NR_120484, intron 2 of 2) 9224 NM_001129998 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 304-451 chr6 4148889 4149089 + 3 NA intron (NR_103764, intron 2 of 3) L1M1|LINE|L1 12917 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 494-146 chr2 224180015 224180261 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -140819 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 433-129 chr2 34209549 34209713 + 3 NA intron (NR_126403, intron 4 of 5) L1PA13|LINE|L1 142405 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 687-24 chr11 30472336 30472718 + 3 NA intron (NM_001584, intron 3 of 5) L1MB3|LINE|L1 107966 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 401-271 chr5 154483064 154483266 + 3 NA Intergenic Intergenic -4938 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 632-23 chr12 56863992 56864314 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 70255 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 694-89 chr3 110872081 110872433 + 3 NA Intergenic L1ME1|LINE|L1 197702 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 713-34 chr2 19737386 19737820 + 3 NA Intergenic Intergenic -131251 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 548-83 chr16 49187639 49187906 + 3 NA Intergenic L1ME2z|LINE|L1 94066 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 658-78 chr3 28087894 28088313 + 3 NA Intergenic Intergenic -153516 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 423-289 chr8 43855013 43855199 + 3 NA Intergenic ALR/Alpha|Satellite|centr 562664 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 277-104 chr13 97838007 97838222 + 3 NA Intergenic AluJb|SINE|Alu -115561 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 778-8 chr10 61837864 61838197 + 3 NA Intergenic Intergenic -63669 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 713-74 chr7 1131240 1131503 + 3 NA intron (NM_001134396, intron 1 of 4) intron (NM_001134396, intron 1 of 4) 6876 NM_001318252 84310 Hs.653258 NM_032350 ENSG00000146540 C7orf50 YCR016W chromosome 7 open reading frame 50 protein-coding 843-21 chr18 6601335 6601651 + 3 NA Intergenic Intergenic 90077 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 394-281 chr5 139920603 139920745 + 3 NA intron (NM_013983, intron 1 of 10) L2c|LINE|L2 122625 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 760-50 chr3 175933646 175933996 + 3 NA Intergenic L1MCb|LINE|L1 -157488 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 524-273 chr8 138128706 138128911 + 3 NA Intergenic Intergenic -45263 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 281-10 chr1 99046439 99046587 + 3 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -41652 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 478-126 chr19 30099128 30099318 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 156984 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 474-272 chr7 89694862 89695066 + 3 NA Intergenic L1MA1|LINE|L1 -424436 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 297-360 chr5 24739436 24739630 + 3 NA Intergenic Intergenic -94555 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 397-286 chr6 134055980 134056178 + 3 NA Intergenic L1ME2z|LINE|L1 -3455 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 326-410 chr5 58969175 58969429 + 3 NA 3' UTR (NM_001197219, exon 15 of 15) 3' UTR (NM_001197219, exon 15 of 15) 30596 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1010-14 chr9 15916699 15917211 + 3 NA intron (NM_001355547, intron 23 of 24) intron (NM_001355547, intron 23 of 24) 336152 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 726-41 chr2 22712552 22712987 + 3 NA Intergenic L1PA17|LINE|L1 176290 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 441-174 chr4 18938027 18938341 + 3 NA Intergenic Intergenic -916309 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 449-280 chr8 117288445 117288713 + 3 NA Intergenic Intergenic 153584 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 731-43 chr20 32916576 32916993 + 3 NA intron (NM_001143967, intron 17 of 26) L2a|LINE|L2 57861 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 826-66 chr9 28060928 28061301 + 3 NA intron (NM_152570, intron 5 of 6) L2a|LINE|L2 -487248 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 497-299 chr9 27958224 27958423 + 3 NA intron (NM_001354574, intron 5 of 5) L1ME3|LINE|L1 -384457 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 817-34 chr3 32597817 32598204 + 3 NA Intergenic Intergenic -27086 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 495-137 chr20 58758352 58758554 + 3 NA Intergenic Intergenic -14972 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 320-343 chr3 39639879 39640051 + 3 NA Intergenic Intergenic 137899 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 489-260 chr8 135405413 135405643 + 3 NA Intergenic Intergenic -51928 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 504-141 chr2 171629888 171630164 + 3 NA Intergenic Intergenic -57443 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 675-101 chr9 26177374 26177648 + 3 NA Intergenic Intergenic 110836 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 709-66 chr4 49105100 49105504 + 3 NA Intergenic (CATTC)n|Satellite|Satellite 118660 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 762-26 chr16 5734999 5735524 + 3 NA Intergenic Intergenic 102794 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 355-9 chr1 82215713 82215862 + 3 NA Intergenic Intergenic 413334 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 264-435 chr9 21726171 21726336 + 3 NA Intergenic Intergenic -76383 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 428-332 chrX 123242120 123242327 + 3 NA intron (NM_007325, intron 2 of 15) intron (NM_007325, intron 2 of 15) 57945 NM_001256743 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 526-203 chr5 114940641 114940880 + 3 NA Intergenic Intergenic -167347 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 693-49 chr19 30196565 30196914 + 3 NA Intergenic L1MC4a|LINE|L1 -175645 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 492-109 chr17 70712931 70713195 + 3 NA Intergenic Intergenic 489116 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 496-36 chr10 64466897 64467199 + 3 NA Intergenic Intergenic -358480 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 417-178 chr3 95995964 95996120 + 3 NA Intergenic Intergenic -312849 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 489-130 chr2 62848870 62849141 + 3 NA intron (NM_001142615, intron 7 of 22) MLT1H1|LTR|ERVL-MaLR 142108 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 845-33 chr6 4417036 4417556 + 3 NA Intergenic L1MEg|LINE|L1 -71502 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 317-82 chr11 55793447 55793571 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR -2047 NM_001004735 219436 Hs.553622 NM_001004735 ENSG00000186113 OR5D14 OR11-141|OR11-150 olfactory receptor family 5 subfamily D member 14 protein-coding 493-112 chr17 72215361 72215605 + 3 NA Intergenic Intergenic 94463 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 899-29 chr7 124065653 124066013 + 3 NA Intergenic LTR33C|LTR|ERVL -32766 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 376-286 chr4 83609655 83609822 + 3 NA Intergenic L1MA5|LINE|L1 73630 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 434-55 chr11 114934640 114934883 + 3 NA Intergenic L3|LINE|CR1 256234 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 948-38 chr9 30823795 30824184 + 3 NA Intergenic Intergenic -415535 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 595-20 chr10 81151389 81151704 + 3 NA Intergenic L1M4a1|LINE|L1 501749 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 553-200 chr5 171160412 171160689 + 3 NA intron (NM_022897, intron 14 of 27) MIR|SINE|MIR -148698 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 225-43 chr10 97893459 97893551 + 3 NA intron (NM_001206528, intron 11 of 14) intron (NM_001206528, intron 11 of 14) -17608 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 477-21 chr1 169632311 169632473 + 3 NA Intergenic AluJb|SINE|Alu -2268 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 488-32 chr10 88174296 88174533 + 3 NA Intergenic L1MA5|LINE|L1 310789 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 546-133 chr21 31476916 31477236 + 3 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 82011 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 967-27 chr8 71724475 71724898 + 3 NA Intergenic Intergenic -118437 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 667-7 chr1 197333617 197333870 + 3 NA intron (NM_001193640, intron 2 of 9) intron (NM_001193640, intron 2 of 9) 65491 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 531-167 chr3 189112021 189112363 + 3 NA Intergenic L1MC4|LINE|L1 -59779 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 626-100 chr4 52063169 52063443 + 3 NA intron (NM_001297608, intron 4 of 11) L1ME4a|LINE|L1 12002 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 360-362 chr5 44191911 44192082 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -196736 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 788-51 chr8 103413274 103413617 + 3 NA non-coding (NR_102338, exon 2 of 8) non-coding (NR_102338, exon 2 of 8) 1662 NM_030780 81034 Hs.532265 NM_030780 ENSG00000164933 SLC25A32 MFT|MFTC|RREI solute carrier family 25 member 32 protein-coding 648-28 chr12 60648581 60648978 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 959409 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 517-283 chr8 136751058 136751348 + 3 NA intron (NR_147196, intron 2 of 5) L1M3b|LINE|L1 220405 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 537-46 chr11 96616263 96616486 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 107949 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 503-38 chr10 83571616 83571809 + 3 NA Intergenic LTR16A|LTR|ERVL 105377 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 735-5 chr1 113365928 113366423 + 3 NA Intergenic MER96B|DNA|hAT-Tip100 -24340 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 323-497 chr7 48227656 48227825 + 3 NA intron (NM_152701, intron 6 of 61) L1ME4c|LINE|L1 56282 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 469-98 chr15 97797491 97797793 + 3 NA intron (NR_024172, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 76787 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 837-9 chr15 87334258 87334704 + 3 NA Intergenic L1MC3|LINE|L1 -242448 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 467-199 chr4 33242762 33243057 + 3 NA Intergenic L1MC5a|LINE|L1 796984 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 713-39 chr2 61729125 61729638 + 3 NA Intergenic Intergenic 124679 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 584-169 chr8 86308786 86309025 + 3 NA Intergenic LTR40a|LTR|ERVL -33642 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 396-23 chr1 164007659 164007819 + 3 NA Intergenic L1M5|LINE|L1 -551621 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 439-274 chr7 120155932 120156160 + 3 NA Intergenic L1MA9|LINE|L1 -117129 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 637-24 chr12 15268398 15268750 + 3 NA Intergenic Intergenic -47157 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 417-62 chr12 67127120 67127405 + 3 NA Intergenic Intergenic -30978 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 406-281 chr7 95953691 95953881 + 3 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 181280 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 948-2 chr1 164190378 164190966 + 3 NA Intergenic Intergenic -368688 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 939-27 chr8 16069278 16069819 + 3 NA Intergenic L1ME3A|LINE|L1 116724 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 475-219 chr5 24716319 24716622 + 3 NA Intergenic Intergenic -71492 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 636-108 chr5 19900585 19900858 + 3 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -14449 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 465-129 chr2 84098086 84098281 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -192499 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 442-231 chr5 45448025 45448305 + 3 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 248215 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 395-307 chr7 21647941 21648155 + 3 NA intron (NM_001277115, intron 28 of 81) MIRb|SINE|MIR 105009 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 373-290 chr4 78251006 78251222 + 3 NA intron (NM_001166133, intron 4 of 41) intron (NM_001166133, intron 4 of 41) -37871 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 532-259 chr8 14498165 14498390 + 3 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 355233 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 778-45 chr22 48219330 48219856 + 3 NA Intergenic Intergenic -54771 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 483-13 chr1 172782863 172783139 + 3 NA Intergenic L1MA2|LINE|L1 123898 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 601-100 chr3 178410975 178411296 + 3 NA Intergenic L3|LINE|CR1 -8066 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 368-311 chr3 176575183 176575372 + 3 NA Intergenic Intergenic 60174 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 706-29 chr15 69008781 69009180 + 3 NA intron (NR_033672, intron 2 of 16) MER57A-int|LTR|ERV1 -5715 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 574-45 chr15 88348361 88348679 + 3 NA Intergenic (TTCAA)n|Simple_repeat|Simple_repeat -91781 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 385-196 chr2 186141311 186141535 + 3 NA Intergenic L2a|LINE|L2 -55106 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 584-106 chr3 151483201 151483432 + 3 NA Intergenic L1MA9|LINE|L1 -24607 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 238-207 chr20 46605182 46605356 + 3 NA intron (NM_001193340, intron 4 of 12) (TGA)n|Simple_repeat|Simple_repeat 46190 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 590-18 chr10 68099080 68099327 + 3 NA Intergenic Intergenic -6804 NR_045662 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 592-36 chr12 59477085 59477293 + 3 NA Intergenic L1MB7|LINE|L1 -118840 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 499-6 chr1 82952735 82952917 + 3 NA intron (NR_147074, intron 2 of 10) intron (NR_147074, intron 2 of 10) 32096 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 523-254 chr7 1793668 1793908 + 3 NA Intergenic L1ME3A|LINE|L1 50465 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 515-36 chr11 27133649 27133843 + 3 NA intron (NR_125767, intron 3 of 4) L1M2|LINE|L1 85022 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 821-10 chr10 112125308 112125756 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie 58233 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 667-72 chr3 197249864 197250186 + 3 NA intron (NM_001366216, intron 4 of 23) L1M3f|LINE|L1 43923 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 591-81 chr2 189368969 189369263 + 3 NA Intergenic Intergenic -72317 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 435-26 chr10 31598764 31598962 + 3 NA Intergenic Intergenic -199108 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 457-155 chr3 39858403 39858702 + 3 NA intron (NM_001284424, intron 1 of 15) L1MA9|LINE|L1 48892 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 384-153 chr19 56549724 56549905 + 3 NA intron (NM_001308440, intron 5 of 6) intron (NM_001308440, intron 5 of 6) 10866 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 467-65 chr12 92063392 92063578 + 3 NA intron (NR_132341, intron 1 of 4) intron (NR_132341, intron 1 of 4) 78228 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 272-250 chr22 47004517 47004659 + 3 NA intron (NM_001284305, intron 10 of 12) intron (NM_001284305, intron 10 of 12) -88546 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 416-130 chr15 67914329 67914570 + 3 NA Intergenic Intergenic -74404 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 691-18 chr12 30176236 30176603 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -391660 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 418-170 chr3 161139313 161139568 + 3 NA Intergenic Intergenic -34068 NM_001349159 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 780-21 chr16 49187092 49187558 + 3 NA Intergenic L1MA9|LINE|L1 94513 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 261-180 chr2 42146066 42146198 + 3 NA intron (NR_110584, intron 3 of 3) MIR|SINE|MIR -23221 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 467-108 chr17 68746423 68746641 + 3 NA Intergenic AluY|SINE|Alu 118378 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 537-37 chr11 23377650 23377869 + 3 NA Intergenic Intergenic 41431 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 552-138 chr3 82154489 82154839 + 3 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 168522 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 699-47 chr2 48027160 48027488 + 3 NA Intergenic L1MEd|LINE|L1 -121531 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 569-55 chr14 30201324 30201599 + 3 NA Intergenic Intergenic -273614 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 742-11 chr10 44704189 44704668 + 3 NA Intergenic L1M4b|LINE|L1 -206888 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 1216-7 chr5 169484396 169485216 + 3 NA Intergenic L1ME1|LINE|L1 -98967 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 716-44 chr20 54230130 54230467 + 3 NA Intergenic Intergenic 22211 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 689-36 chr14 65709556 65710006 + 3 NA intron (NR_038167, intron 7 of 8) intron (NR_038167, intron 7 of 8) 238679 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 499-203 chr5 39535695 39535972 + 3 NA Intergenic Intergenic 15402 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 176-74 chr21 35364521 35364584 + 3 NA Intergenic L2c|LINE|L2 216212 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 1639-5 chr3 150517292 150518387 + 3 NA Intergenic MER9a2|LTR|ERVK 28657 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 444-166 chr3 191953421 191953680 + 3 NA Intergenic L1MC5a|LINE|L1 -285080 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 689-37 chr14 88418099 88418391 + 3 NA intron (NM_001040428, intron 4 of 10) L1MCb|LINE|L1 32588 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 272-117 chr14 67148288 67148416 + 3 NA intron (NM_001024218, intron 17 of 21) intron (NM_001024218, intron 17 of 21) -41088 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 415-83 chr15 87063823 87064112 + 3 NA Intergenic Intergenic -75541 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 496-204 chr5 13088638 13088879 + 3 NA Intergenic MIR|SINE|MIR -55872 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 513-106 chr18 144934 145213 + 3 NA Intergenic L1MC4|LINE|L1 -13484 NM_005151 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 504-203 chr4 157453615 157453843 + 3 NA Intergenic Intergenic -118761 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 567-102 chr21 16760318 16760584 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 170214 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 354-189 chr18 77980100 77980270 + 3 NA intron (NR_104127, intron 1 of 1) intron (NR_104127, intron 1 of 1) 13542 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 198-193 chr5 20124023 20124164 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -135893 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 672-71 chr3 40852200 40852709 + 3 NA Intergenic Intergenic 327494 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 481-37 chr10 67438384 67438617 + 3 NA intron (NM_001127384, intron 5 of 17) L1M1|LINE|L1 -35090 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 945 chr1 77608633 77609025 + 3 NA intron (NM_001308237, intron 4 of 13) L1MA9|LINE|L1 73829 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 540-205 chr8 50224551 50224909 + 3 NA intron (NR_135797, intron 2 of 20) MER4D1|LTR|ERV1 60599 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 888-5 chr11 11062537 11063142 + 3 NA Intergenic Intergenic 204622 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 751-76 chr7 145487825 145488345 + 3 NA Intergenic MER51-int|LTR|ERV1 -652032 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 1015-11 chr5 28024087 28024770 + 3 NA Intergenic Intergenic 263237 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 694-51 chr18 359436 359866 + 3 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -91604 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 343-221 chr2 8588292 8588537 + 3 NA Intergenic Intergenic -4622 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 778-69 chr8 139067327 139067792 + 3 NA Intergenic Intergenic -153518 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 445-241 chr6 131054500 131054749 + 3 NA intron (NM_001135554, intron 1 of 14) LTR3B_|LTR|ERVK 8621 NM_001431 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 553-218 chr7 64723430 64723722 + 3 NA Intergenic MIR3|SINE|MIR 44512 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 490-10 chr1 77060780 77061070 + 3 NA TTS (NR_106978) TTS (NR_106978) 782 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 501-61 chr13 99782769 99783008 + 3 NA intron (NR_120421, intron 1 of 4) L1MEd|LINE|L1 -53887 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 662-65 chr4 37162195 37162542 + 3 NA Intergenic Intergenic 79623 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 402-316 chr7 31949789 31949962 + 3 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 120532 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 495-48 chr12 65730023 65730258 + 3 NA Intergenic Intergenic -87768 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 365-70 chr11 42924968 42925176 + 3 NA Intergenic Intergenic 344297 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 270-29 chr10 20081668 20081805 + 3 NA intron (NM_032812, intron 4 of 13) L1MC3|LINE|L1 265304 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 1577-2 chr10 21828008 21828998 + 3 NA intron (NM_022365, intron 8 of 11) intron (NM_022365, intron 8 of 11) 175227 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 577-164 chr6 414745 414942 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 23091 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 512-168 chr3 79822157 79822511 + 3 NA Intergenic Intergenic -54336 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 358-209 chr2 71806074 71806269 + 3 NA Intergenic Intergenic 339472 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 481-197 chr3 68285290 68285537 + 3 NA intron (NM_001252216, intron 2 of 4) L1ME3|LINE|L1 -215224 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 146-61 chr4 10774197 10774278 + 3 NA Intergenic Intergenic -89469 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 550-99 chr18 74428526 74428709 + 3 NA Intergenic Intergenic 19169 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 380-383 chr8 38891930 38892085 + 3 NA Intergenic Intergenic -9339 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing A2 protein-coding 346-476 chr8 9836982 9837212 + 3 NA Intergenic L1MEg|LINE|L1 66232 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 1164-6 chr2 114003989 114004611 + 3 NA intron (NR_148508, intron 1 of 1) MSTB|LTR|ERVL-MaLR -24316 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 867-15 chr16 3319422 3319867 + 3 NA Intergenic L2a|LINE|L2 13432 NM_001324041 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 351-320 chr3 169714124 169714287 + 3 NA Intergenic L1MEf|LINE|L1 -50493 NM_001366466 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 562-231 chrX 64039165 64039547 + 3 NA Intergenic L1MA3|LINE|L1 166352 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 488-9 chr1 80567818 80568062 + 3 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 32185 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 342-190 chr17 47141335 47141522 + 3 NA intron (NM_001256, intron 12 of 18) intron (NM_001256, intron 12 of 18) 47867 NM_001353050 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 418-214 chr5 54596641 54596833 + 3 NA Intergenic MIR3|SINE|MIR 78978 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 412-6 chr1 49732549 49732861 + 3 NA intron (NM_001323575, intron 2 of 12) L1M4a1|LINE|L1 -260620 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 516-51 chr12 59318154 59318406 + 3 NA Intergenic L1M5|LINE|L1 -277749 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 603-18 chr10 97432153 97432371 + 3 NA intron (NM_002629, intron 3 of 3) intron (NM_002629, intron 3 of 3) 4585 NM_001317079 5223 Hs.632918 NM_002629 ENSG00000171314 PGAM1 HEL-S-35|PGAM-B|PGAMA phosphoglycerate mutase 1 protein-coding 726-70 chr7 34105905 34106328 + 3 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 200577 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 605-16 chr10 111492705 111493091 + 3 NA Intergenic L1M1|LINE|L1 378607 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 264-375 chr6 163273210 163273364 + 3 NA intron (NM_001080379, intron 4 of 4) L1M5|LINE|L1 51186 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 426-319 chrX 43327823 43328051 + 3 NA Intergenic L1PBa|LINE|L1 150943 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 933-26 chr3 49234009 49234512 + 3 NA intron (NM_001135197, intron 2 of 7) AluSx|SINE|Alu 34762 NM_001135197 339834 Hs.631931 NM_178173 ENSG00000173421 CCDC36 CT74 coiled-coil domain containing 36 protein-coding 507-78 chr13 104357676 104357995 + 3 NA Intergenic Intergenic 932635 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 577-167 chr6 50527161 50527522 + 3 NA Intergenic Intergenic -186203 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 281-364 chr5 80895075 80895193 + 3 NA Intergenic HERV4_I-int|LTR|ERV1 -65229 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 425-23 chr1 237557926 237558130 + 3 NA intron (NM_001035, intron 27 of 104) L2c|LINE|L2 86909 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 695-80 chr5 46064983 46065401 + 3 NA Intergenic ALR/Alpha|Satellite|centr -368812 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 484-141 chr2 148240918 148241171 + 3 NA intron (NM_018328, intron 4 of 14) L1MEf|LINE|L1 -219440 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 522-27 chr10 83462042 83462362 + 3 NA Intergenic Intergenic 214887 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 481-239 chr5 21606389 21606599 + 3 NA Intergenic MIR|SINE|MIR 147014 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 464-212 chr6 53841590 53841810 + 3 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 46695 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 452-290 chr9 35505000 35505209 + 3 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) 14993 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 747-57 chr6 17040353 17040747 + 3 NA Intergenic L1ME1|LINE|L1 -61708 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 555-190 chr7 120246072 120246344 + 3 NA Intergenic Intergenic -26967 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 419-236 chr5 131837180 131837407 + 3 NA intron (NM_001303622, intron 11 of 12) L1PA13|LINE|L1 -40276 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 288-75 chr11 115285961 115286126 + 3 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -47534 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 339-43 chr1 224823270 224823422 + 3 NA Intergenic Intergenic -106308 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 359-275 chr20 6207389 6207665 + 3 NA Intergenic L1M3c|LINE|L1 -83983 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 536-51 chr11 81705112 81705352 + 3 NA Intergenic L1MCb|LINE|L1 185604 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 597-3 chr1 34115946 34116280 + 3 NA intron (NM_052896, intron 1 of 69) L1MB2|LINE|L1 49161 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 412-108 chr16 51799843 51800049 + 3 NA Intergenic Intergenic 37427 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 358-116 chr14 44828619 44828794 + 3 NA Intergenic Intergenic -29580 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 294-239 chr2 149399057 149399160 + 3 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 68521 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 508-107 chr2 104283947 104284203 + 3 NA Intergenic L2a|LINE|L2 124257 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 532-41 chr12 22339313 22339603 + 3 NA Intergenic L1MCa|LINE|L1 -4744 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 600-26 chr12 15272826 15273100 + 3 NA Intergenic LTR78B|LTR|ERV1 -49545 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 431-270 chr7 62929755 62929979 + 3 NA Intergenic ALR/Alpha|Satellite|centr 374189 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 584-142 chr5 124389030 124389315 + 3 NA intron (NR_125774, intron 3 of 5) L1MB3|LINE|L1 49348 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 511-138 chr2 195206020 195206246 + 3 NA Intergenic MIRb|SINE|MIR -450825 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 396-256 chr4 107118497 107118664 + 3 NA Intergenic Intergenic -82267 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 586-170 chrX 74367709 74367908 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -53685 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 668-54 chr2 128703208 128703631 + 3 NA Intergenic L1M4b|LINE|L1 -161181 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 450-48 chr11 48586514 48586804 + 3 NA Intergenic Intergenic 97866 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 824-29 chr3 120454080 120454465 + 3 NA Intergenic L1ME3Cz|LINE|L1 -3280 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 446-94 chr13 82759337 82759543 + 3 NA Intergenic L1PB4|LINE|L1 1122953 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 786-41 chr3 44385105 44385536 + 3 NA intron (NM_001282915, intron 5 of 10) intron (NM_001282915, intron 5 of 10) 37617 NM_001351479 102724231 Hs.131918 NM_001351479 C3orf86 LINC00694 chromosome 3 open reading frame 86 protein-coding 556-166 chr4 172283010 172283322 + 3 NA intron (NM_001034845, intron 3 of 12) intron (NM_001034845, intron 3 of 12) 405751 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 644-67 chr3 157008648 157009075 + 3 NA intron (NM_001004316, intron 9 of 12) L1ME3E|LINE|L1 -72980 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 888-12 chr15 93682487 93683017 + 3 NA Intergenic Intergenic -173808 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 1107-6 chr2 20879861 20880374 + 3 NA Intergenic MER52A|LTR|ERV1 -56987 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 661-36 chr17 34717802 34718217 + 3 NA Intergenic Intergenic 137260 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 525-199 chr5 87812793 87813049 + 3 NA Intergenic L1ME1|LINE|L1 150879 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 529-89 chr18 8464483 8464850 + 3 NA Intergenic Intergenic -97632 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 1053-16 chr4 67007615 67008153 + 3 NA Intergenic Intergenic 414116 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 405-137 chr2 63058498 63058680 + 3 NA TTS (NM_014562) TTS (NM_014562) 7759 NR_130153 5013 Hs.734360 NM_014562 ENSG00000115507 OTX1 - orthodenticle homeobox 1 protein-coding 328-250 chr2 37441014 37441162 + 3 NA Intergenic Intergenic 96458 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 822-29 chr2 49119170 49119593 + 3 NA intron (NM_000145, intron 1 of 9) (TTTGTT)n|Simple_repeat|Simple_repeat 35134 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 492-171 chr3 31073511 31073820 + 3 NA Intergenic LTR16A2|LTR|ERVL 88122 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 581-89 chr2 214289312 214289670 + 3 NA intron (NR_047660, intron 14 of 14) L1MA4A|LINE|L1 -121563 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 483-159 chr3 24905658 24905883 + 3 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 76447 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 471-286 chr9 82192964 82193192 + 3 NA Intergenic Intergenic 204306 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 484-118 chr2 29930573 29930908 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -9154 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 494-192 chr3 177579989 177580282 + 3 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 138214 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 510-58 chr12 40195501 40195775 + 3 NA Intergenic Intergenic -29359 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 785-16 chr11 50489531 50489870 + 3 NA Intergenic HERVK11-int|LTR|ERVK 80553 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 525-203 chr5 103515570 103516014 + 3 NA Intergenic MER110A|LTR|ERV1 26193 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 522-100 chr16 82784591 82784781 + 3 NA intron (NR_110938, intron 1 of 2) L2a|LINE|L2 11367 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 538-85 chr16 79670934 79671247 + 3 NA Intergenic L2c|LINE|L2 -70353 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 549 chr1 13904916 13905204 + 3 NA Intergenic L1MEd|LINE|L1 155645 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 532-161 chr3 28360563 28360865 + 3 NA intron (NM_001324170, intron 1 of 6) L1M3|LINE|L1 11565 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 521-121 chr2 89837511 89837765 + 3 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -199731 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 615-59 chr2 36150755 36151115 + 3 NA Intergenic Intergenic 204635 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 330-433 chr5 116092742 116092928 + 3 NA intron (NM_001308080, intron 4 of 6) Tigger5b|DNA|TcMar-Tigger 7373 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 720-86 chr7 75805381 75805791 + 3 NA Intergenic LTR8A|LTR|ERV1 8220 NM_002991 6369 Hs.247838 NM_002991 ENSG00000106178 CCL24 Ckb-6|MPIF-2|MPIF2|SCYA24 C-C motif chemokine ligand 24 protein-coding 453-186 chr4 103733131 103733313 + 3 NA Intergenic Intergenic -13237 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 353-508 chr8 31540759 31540902 + 3 NA Intergenic Intergenic -98922 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 411-248 chr6 8995901 8996144 + 3 NA Intergenic L1PB4|LINE|L1 343813 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 709-30 chr18 2197476 2197866 + 3 NA Intergenic Intergenic 373834 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 542-52 chr13 74927201 74927402 + 3 NA Intergenic L1MB7|LINE|L1 313080 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 408-309 chr7 4622098 4622300 + 3 NA Intergenic MER44B|DNA|TcMar-Tigger -60096 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 274-333 chr6 49970821 49970990 + 3 NA Intergenic Intergenic -1280 NM_001037729 245927 Hs.582789 NM_001037729 ENSG00000214642 DEFB113 DEFB-13 defensin beta 113 protein-coding 596-14 chr1 218621384 218621645 + 3 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 111419 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 503-69 chr12 41379619 41379900 + 3 NA intron (NM_001164595, intron 3 of 9) L1MA9|LINE|L1 -57980 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 535-22 chr10 8211369 8211615 + 3 NA Intergenic Intergenic 56813 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 1055-16 chr4 160816603 160816964 + 3 NA Intergenic (TTTTAAC)n|Simple_repeat|Simple_repeat -1038999 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 554-52 chr11 124211507 124211721 + 3 NA Intergenic Intergenic -13025 NM_001291438 26492 Hs.381319 NM_001291438 OR8G2P HSTPCR120|OR8G2|OR8G4|ORL206|ORL486|TPCR120 olfactory receptor family 8 subfamily G member 2 pseudogene protein-coding 476-34 chr10 103954903 103955222 + 3 NA Intergenic Intergenic -12078 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 520-70 chr12 63182998 63183249 + 3 NA Intergenic MIR3|SINE|MIR -30313 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 516-168 chr3 42345009 42345330 + 3 NA Intergenic Intergenic 65441 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 575-204 chr8 128999930 129000266 + 3 NA Intergenic Intergenic -34097 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 208-155 chr22 27297965 27298035 + 3 NA Intergenic Intergenic -12651 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 512-257 chr7 48229241 48229572 + 3 NA intron (NM_152701, intron 6 of 61) intron (NM_152701, intron 6 of 61) 57948 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 410-265 chr6 129520024 129520231 + 3 NA Intergenic Intergenic 190050 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 381-308 chr5 41254465 41254598 + 3 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 6938 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 404-180 chr2 189998550 189998729 + 3 NA Intergenic L1M4|LINE|L1 64090 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 781-14 chr13 53915894 53916211 + 3 NA Intergenic L2b|LINE|L2 100633 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 1078-18 chr9 113008560 113009091 + 3 NA intron (NM_001101338, intron 2 of 4) L2|LINE|L2 3367 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 661 chr1 49020702 49021139 + 3 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -236491 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 249-313 chr5 150993 151175 + 3 NA intron (NM_052909, intron 6 of 19) L1ME1|LINE|L1 -40411 NM_001080478 389257 Hs.103142 NM_001080478 ENSG00000185028 LRRC14B - leucine rich repeat containing 14B protein-coding 542-109 chr2 203957620 203957802 + 3 NA intron (NM_012092, intron 3 of 4) intron (NM_012092, intron 3 of 4) 20963 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 826-24 chr18 13731164 13731631 + 3 NA intron (NM_003799, intron 2 of 11) AluSq2|SINE|Alu 4724 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 389-355 chr8 31676044 31676215 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 36377 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 631-130 chr9 27287169 27287568 + 3 NA intron (NM_001161585, intron 5 of 6) intron (NM_001161585, intron 5 of 6) -4575 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 462-159 chr20 42710075 42710378 + 3 NA intron (NM_133170, intron 6 of 31) MSTB-int|LTR|ERVL-MaLR 24743 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 307-405 chr5 155800848 155801028 + 3 NA Intergenic L1MEj|LINE|L1 -525819 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 510-70 chr14 28298294 28298469 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 466938 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 540-234 chrX 73065910 73066225 + 3 NA Intergenic L1MB1|LINE|L1 13445 NM_001012977 340529 Hs.450320 NM_001012977 ENSG00000186288 PABPC1L2A RBM32A poly(A) binding protein cytoplasmic 1 like 2A protein-coding 664 chr1 15950040 15950435 + 3 NA intron (NM_001287603, intron 2 of 15) intron (NM_001287603, intron 2 of 15) 25895 NM_003443 7709 Hs.433764 NM_003443 ENSG00000116809 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 407-333 chr8 133845978 133846172 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -40421 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 345-357 chr3 106250379 106250640 + 3 NA Intergenic AluJr|SINE|Alu -381108 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 698-30 chr18 9473190 9473534 + 3 NA Intergenic Intergenic -2151 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 464-259 chr8 107665757 107666092 + 3 NA Intergenic L3|LINE|CR1 -168006 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 487-104 chr16 26554171 26554363 + 3 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -512660 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 322-453 chr6 48172650 48172846 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -104059 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 409-26 chr10 56606499 56606779 + 3 NA Intergenic Intergenic -245366 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 485-163 chr20 42218556 42218790 + 3 NA intron (NM_133170, intron 16 of 31) intron (NM_133170, intron 16 of 31) -466810 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 426-52 chr11 108327131 108327364 + 3 NA intron (NM_001351834, intron 48 of 63) intron (NM_001351834, intron 48 of 63) 103718 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 642-68 chr22 20743082 20743326 + 3 NA intron (NM_001362862, intron 29 of 53) AluSz|SINE|Alu -30909 NM_000185 3053 Hs.474270 NM_000185 ENSG00000099937 SERPIND1 D22S673|HC2|HCF2|HCII|HLS2|LS2|THPH10 serpin family D member 1 protein-coding 791-37 chr2 118518290 118518750 + 3 NA Intergenic L1MEg|LINE|L1 84446 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 346-50 chr10 77335955 77336106 + 3 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 14731 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 451-185 chr5 144491190 144491383 + 3 NA Intergenic L1PB3|LINE|L1 285895 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 552-135 chr3 41382661 41382886 + 3 NA intron (NM_001322500, intron 35 of 35) intron (NM_001322500, intron 35 of 35) 183268 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 635-79 chr4 59295293 59295621 + 3 NA Intergenic L1MB4|LINE|L1 281884 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 295-60 chr10 125678003 125678144 + 3 NA intron (NM_001128202, intron 1 of 3) L1MA3|LINE|L1 5090 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 580-13 chr1 239076061 239076329 + 3 NA Intergenic L1MA2|LINE|L1 -310373 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 548-202 chr6 162550117 162550309 + 3 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -176919 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 492-248 chr7 145266758 145266995 + 3 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -430823 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 539-171 chr5 110825327 110825600 + 3 NA Intergenic MER52-int|LTR|ERV1 86456 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 599-77 chr22 39797173 39797396 + 3 NA intron (NM_152512, intron 5 of 6) L1M2|LINE|L1 96476 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 412-47 chr11 20619466 20619747 + 3 NA intron (NM_004211, intron 7 of 15) intron (NM_004211, intron 7 of 15) 20206 NM_004211 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 499-216 chr5 162750197 162750486 + 3 NA Intergenic Intergenic 682699 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 506-103 chr16 60125789 60125988 + 3 NA Intergenic Intergenic 233905 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 619-116 chr6 164738242 164738539 + 3 NA Intergenic Intergenic 83673 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 629-101 chr5 85084883 85085135 + 3 NA Intergenic Intergenic -700129 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 494-108 chr18 46583503 46583730 + 3 NA intron (NM_144612, intron 12 of 39) L1MA6|LINE|L1 -24304 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 580-3 chr1 96442258 96442488 + 3 NA Intergenic Intergenic -68248 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 588-70 chr2 76637219 76637528 + 3 NA Intergenic Intergenic -348592 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 701-18 chr12 98406246 98406641 + 3 NA Intergenic L2a|LINE|L2 50702 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 513-79 chr14 67368395 67368711 + 3 NA intron (NM_004094, intron 2 of 7) MER74B|LTR|ERVL 8225 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 538-71 chr14 71199755 71200160 + 3 NA Intergenic LTR35B|LTR|ERV1 -120519 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 256-61 chr11 8791803 8791914 + 3 NA intron (NR_120590, intron 4 of 4) intron (NR_120590, intron 4 of 4) 18816 NM_213618 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 511-166 chr3 21966051 21966331 + 3 NA intron (NR_046876, intron 2 of 3) intron (NR_046876, intron 2 of 3) 9052 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 881-5 chr10 129578621 129579117 + 3 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 111628 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 627-123 chr9 9057546 9057981 + 3 NA intron (NM_002839, intron 10 of 45) Tigger19a|DNA|TcMar-Tigger 199745 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 481-289 chr8 50722717 50722962 + 3 NA intron (NM_001287814, intron 16 of 16) intron (NM_001287814, intron 16 of 16) 558708 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 537-87 chr17 54587454 54587750 + 3 NA Intergenic L1MA2|LINE|L1 -313089 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 801-39 chr4 179714645 179715091 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 1444281 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 1046-21 chr8 59812839 59813421 + 3 NA Intergenic AluSg|SINE|Alu 468270 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 687-107 chr7 47036392 47036772 + 3 NA Intergenic MIRb|SINE|MIR -339460 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 442-265 chr6 143823249 143823605 + 3 NA intron (NM_001100165, intron 11 of 11) intron (NM_001100165, intron 11 of 11) -19846 NM_001329953 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 641-81 chr4 31399389 31399852 + 3 NA Intergenic L1PA7|LINE|L1 -106924 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 408-245 chr4 100723073 100723311 + 3 NA Intergenic L1MEf|LINE|L1 -48079 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 538-31 chr10 91570805 91571046 + 3 NA intron (NR_024467, intron 1 of 4) L1ME3A|LINE|L1 40535 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 904-39 chr7 71659469 71660086 + 3 NA intron (NM_022479, intron 6 of 10) MLT1H|LTR|ERVL-MaLR -352007 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 1186 chr1 194112275 194112789 + 3 NA Intergenic Intergenic 807787 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 423-92 chr16 7526964 7527134 + 3 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 194204 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 573-116 chr3 67328801 67329088 + 3 NA Intergenic L2c|LINE|L2 103480 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 316-487 chr6 67267174 67267332 + 3 NA Intergenic Intergenic -788098 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 505-101 chr15 80222524 80222709 + 3 NA intron (NM_001352888, intron 1 of 2) L1MC5a|LINE|L1 29597 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 507-256 chr8 122421479 122421779 + 3 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 147015 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 470-27 chr10 76708222 76708379 + 3 NA Intergenic L1HS|LINE|L1 -179744 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 486-25 chr10 25165401 25165683 + 3 NA intron (NR_027333, intron 1 of 1) intron (NR_027333, intron 1 of 1) -9459 NM_020752 57512 Hs.499108 NM_020752 ENSG00000151025 GPR158 - G protein-coupled receptor 158 protein-coding 425-188 chr3 98251068 98251244 + 3 NA Intergenic L1PA12|LINE|L1 -13088 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 430-187 chr3 30488577 30488806 + 3 NA Intergenic HAL1|LINE|L1 -30177 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 492-104 chr16 74099220 74099426 + 3 NA Intergenic L1MC2|LINE|L1 116198 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 338-340 chr3 75910779 75910988 + 3 NA Intergenic Intergenic -125334 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 327-206 chr18 1177371 1177606 + 3 NA Intergenic L1MB1|LINE|L1 182141 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 947-23 chr6 40458110 40458654 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 80045 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 745-6 chr10 88260397 88260810 + 3 NA Intergenic Intergenic 322715 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 540-213 chr8 114825317 114825744 + 3 NA Intergenic AluY|SINE|Alu 842483 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 566-78 chr19 29040881 29041135 + 3 NA Intergenic Intergenic 38453 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 435-273 chrX 83453722 83453922 + 3 NA Intergenic Intergenic -54468 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 402-280 chr5 100981049 100981293 + 3 NA Intergenic L1MEc|LINE|L1 -77889 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 473-175 chr3 73965916 73966152 + 3 NA Intergenic L1M5|LINE|L1 156790 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 414-199 chr22 32706382 32706571 + 3 NA intron (NM_003490, intron 6 of 13) L1MEc|LINE|L1 -94340 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 541-45 chr12 37956475 37956770 + 3 NA Intergenic ALR/Alpha|Satellite|centr -360152 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 774-23 chr13 39513261 39513616 + 3 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 89755 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 637-103 chr6 116862445 116862751 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -14644 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 518-140 chr2 119851153 119851330 + 3 NA intron (NM_002830, intron 2 of 26) MER50B|LTR|ERV1 91319 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 489-14 chr1 184784373 184784641 + 3 NA Intergenic Intergenic -29649 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 1073-10 chr21 26815433 26816038 + 3 NA Intergenic Intergenic 29674 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 925-7 chr11 24044425 24044943 + 3 NA Intergenic L1M4c|LINE|L1 -452369 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 294-135 chr15 53074731 53074910 + 3 NA Intergenic Intergenic -41545 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 476-61 chr12 14404037 14404289 + 3 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 18882 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 341-238 chr2 29838034 29838220 + 3 NA intron (NM_004304, intron 1 of 28) L1MEc|LINE|L1 83459 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 900-35 chr5 44040356 44040928 + 3 NA Intergenic L1PA11|LINE|L1 -348090 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 692-51 chr2 161259131 161259385 + 3 NA Intergenic Intergenic -4615 NR_110593 101929512 Hs.666488 NR_110593 LOC101929512 - uncharacterized LOC101929512 ncRNA 284-130 chr15 27860898 27861107 + 3 NA intron (NM_001300984, intron 20 of 22) intron (NM_001300984, intron 20 of 22) 238313 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 535-109 chr18 1939122 1939405 + 3 NA Intergenic L1MEc|LINE|L1 -579634 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 397-360 chr9 104713268 104713552 + 3 NA Intergenic Intergenic 18988 NM_001004484 286365 Hs.553683 NM_001004484 ENSG00000179055 OR13D1 OR9-15 olfactory receptor family 13 subfamily D member 1 protein-coding 486-67 chr13 59244226 59244425 + 3 NA Intergenic Intergenic -768393 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 466-74 chr14 25714253 25714517 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -664088 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 642-59 chr2 172199749 172200137 + 3 NA Intergenic Intergenic 96937 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 538-236 chr8 105185533 105185729 + 3 NA Intergenic L1PA16|LINE|L1 -132807 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 332-474 chr7 27800163 27800377 + 3 NA intron (NM_001362795, intron 13 of 14) intron (NM_001362795, intron 13 of 14) 60175 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 459-137 chr2 75227211 75227463 + 3 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -27817 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 400-141 chr18 49158238 49158517 + 3 NA intron (NM_001353210, intron 14 of 16) intron (NM_001353210, intron 14 of 16) -108609 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 489-195 chr4 73782769 73783070 + 3 NA Intergenic Intergenic 42350 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 497-309 chrX 87242893 87243125 + 3 NA Intergenic L1M1|LINE|L1 -274793 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 537-203 chr5 141181240 141181571 + 3 NA promoter-TSS (NM_020957) promoter-TSS (NM_020957) -285 NM_020957 57717 Hs.147674 NM_020957 ENSG00000272674 PCDHB16 ME1|PCDH-BETA16|PCDH3X|PCDHB8a protocadherin beta 16 protein-coding 563-14 chr10 19829831 19830250 + 3 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 13608 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 543-96 chr17 49118897 49119227 + 3 NA Intergenic Intergenic -13398 NM_001159388 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 710-93 chr8 112827073 112827512 + 3 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 183799 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 499-30 chr10 84492855 84493119 + 3 NA intron (NM_001284240, intron 9 of 9) L1MDa|LINE|L1 67818 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 619-91 chr4 30264117 30264493 + 3 NA Intergenic Intergenic -456064 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 487-257 chr6 164237143 164237397 + 3 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -565786 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 333-441 chr5 33169813 33170013 + 3 NA Intergenic L1ME2z|LINE|L1 -59822 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 729-74 chr8 30879404 30879703 + 3 NA intron (NR_146525, intron 2 of 6) L1MD2|LINE|L1 9153 NR_146525 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 723-30 chr19 51969487 51969821 + 3 NA intron (NM_021632, intron 2 of 4) AluJo|SINE|Alu 17186 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 598-126 chr6 169206071 169206466 + 3 NA Intergenic L1MA4|LINE|L1 -6944 NR_134621 101929523 Hs.442696 NR_134621 ENSG00000226445 LOC101929523 - uncharacterized LOC101929523 ncRNA 552-79 chr16 13442359 13442575 + 3 NA Intergenic AluSx|SINE|Alu -477690 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 1140-2 chr11 49135581 49136177 + 3 NA Intergenic Intergenic 72723 NM_001193471 2346 Hs.551896 NM_004476 ENSG00000086205 FOLH1 FGCP|FOLH|GCP2|GCPII|NAALAD1|NAALAdase|PSM|PSMA|mGCP folate hydrolase 1 protein-coding 681-8 chr11 14158715 14159180 + 3 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 196224 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 371-17 chr1 166341505 166341776 + 3 NA Intergenic L1M5|LINE|L1 148399 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 551-32 chr11 50715081 50715378 + 3 NA Intergenic ALR/Alpha|Satellite|centr 306082 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 840-37 chr4 28606883 28607294 + 3 NA Intergenic AluSc8|SINE|Alu -212494 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 694-24 chr12 7569673 7570070 + 3 NA Intergenic Intergenic -66053 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 620-22 chr11 43659578 43659961 + 3 NA Intergenic L1ME1|LINE|L1 -20969 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 216-206 chr22 29941611 29941752 + 3 NA intron (NM_153051, intron 1 of 18) L1ME2|LINE|L1 58507 NM_153051 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 595-151 chr7 33823746 33824209 + 3 NA Intergenic Intergenic -80938 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 532-3 chr1 68603793 68604119 + 3 NA Intergenic Intergenic -106874 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 576-190 chrX 101856374 101856738 + 3 NA intron (NR_159739, intron 1 of 18) intron (NR_159739, intron 1 of 18) 1021 NR_159737 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 807-11 chr11 116114613 116115003 + 3 NA Intergenic FordPrefect_a|DNA|hAT-Tip100 -354608 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 492-101 chr15 100209309 100209488 + 3 NA intron (NM_139057, intron 7 of 21) intron (NM_139057, intron 7 of 21) 132577 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 335-189 chr16 71471349 71471529 + 3 NA Intergenic Intergenic -9192 NM_001304492 7571 Hs.656643 NM_145911 ENSG00000167377 ZNF23 KOX16|ZNF359|ZNF612|Zfp612 zinc finger protein 23 protein-coding 494-34 chr11 27818897 27819062 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -96949 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 731-6 chr1 233559912 233560296 + 3 NA Intergenic Intergenic -54002 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 555-70 chr17 54861816 54862072 + 3 NA Intergenic MIRb|SINE|MIR -38747 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 382-250 chr22 35293297 35293567 + 3 NA intron (NM_001003681, intron 10 of 10) intron (NM_001003681, intron 10 of 10) -5843 NM_001135729 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 502-137 chr2 57037653 57037897 + 3 NA Intergenic L1M3f|LINE|L1 -852005 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 673-82 chr3 159672962 159673253 + 3 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 95505 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 391-180 chr2 83095730 83095899 + 3 NA Intergenic L1MEc|LINE|L1 239011 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 621-105 chr5 162777161 162777546 + 3 NA Intergenic L1MD1|LINE|L1 -660218 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 489-167 chr22 27251856 27252111 + 3 NA Intergenic Intergenic -27304 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 478-186 chr3 65283336 65283605 + 3 NA Intergenic L1MB2|LINE|L1 -595470 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 449-89 chr15 86432063 86432328 + 3 NA intron (NM_152336, intron 18 of 24) L1MC3|LINE|L1 -115227 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 448-34 chr10 54727321 54727474 + 3 NA intron (NM_001354404, intron 4 of 34) L1PA15|LINE|L1 73834 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 492-173 chr3 73240105 73240459 + 3 NA Intergenic L1MA1|LINE|L1 178623 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 392-116 chr17 78682281 78682536 + 3 NA intron (NM_001365041, intron 10 of 12) HAL1|LINE|L1 34624 NM_001292019 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 404-262 chr5 118076958 118077286 + 3 NA intron (NR_104997, intron 2 of 2) LTR37B|LTR|ERV1 -205452 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 594-155 chr8 137030961 137031216 + 3 NA Intergenic Intergenic 382500 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 295-186 chr18 36049795 36049969 + 3 NA intron (NM_001303411, intron 1 of 7) L1MB3|LINE|L1 17677 NM_001303412 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 522-128 chr2 51249788 51250066 + 3 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 217326 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 455-287 chr8 129990060 129990307 + 3 NA intron (NM_001353245, intron 1 of 13) L2a|LINE|L2 18270 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 702-83 chr5 179067860 179068298 + 3 NA intron (NM_014594, intron 2 of 4) AluJr|SINE|Alu 7706 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 318-242 chr2 4752926 4753139 + 3 NA Intergenic Intergenic -96810 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 502-257 chr8 49605930 49606125 + 3 NA Intergenic L1MB7|LINE|L1 -93847 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 458-82 chr14 92788734 92789043 + 3 NA Intergenic L2b|LINE|L2 -5417 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 588-46 chr16 22786300 22786532 + 3 NA Intergenic Intergenic -27746 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 475-223 chr5 44845695 44845916 + 3 NA Intergenic Intergenic 36858 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 364-221 chr2 123131488 123131682 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -58104 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 604-72 chr18 73434603 73435012 + 3 NA Intergenic Intergenic 109866 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 358-507 chr9 17760469 17760645 + 3 NA intron (NM_003026, intron 2 of 8) intron (NM_003026, intron 2 of 8) 181491 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 266-326 chr5 44002901 44003026 + 3 NA Intergenic Intergenic -385769 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 343-132 chr14 39547810 39548019 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -115414 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 946-7 chr16 68562508 68563010 + 3 NA intron (NM_001305204, intron 4 of 4) intron (NM_001305204, intron 4 of 4) 23468 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 445-150 chr20 10659633 10659822 + 3 NA intron (NM_000214, intron 3 of 25) intron (NM_000214, intron 3 of 25) -10032 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 800-51 chr5 67358590 67358858 + 3 NA Intergenic L2c|LINE|L2 -161925 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 268-279 chr4 66883781 66883918 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 538151 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 407-341 chr9 13563353 13563532 + 3 NA Intergenic Intergenic -132113 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 728-95 chr7 82855235 82855654 + 3 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 307440 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 246-164 chr18 7102688 7102811 + 3 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 15048 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 412-191 chr21 27469494 27469677 + 3 NA Intergenic Intergenic -252794 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 296-278 chr21 30483353 30483494 + 3 NA Intergenic Intergenic -3056 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 627-75 chr3 181460435 181460972 + 3 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -18217 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 788-5 chr10 81232243 81232711 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 582680 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 370-249 chr2 150366618 150366849 + 3 NA Intergenic Intergenic -109726 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 996-20 chr5 24154126 24154513 + 3 NA intron (NR_131245, intron 4 of 4) L1MA2|LINE|L1 202971 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 387-193 chr20 12718751 12718915 + 3 NA Intergenic Intergenic 218130 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 556-212 chr7 114061148 114061409 + 3 NA Intergenic Intergenic -25049 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 440-226 chr6 139715006 139715261 + 3 NA Intergenic Intergenic -55940 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 582-136 chr6 126417785 126418132 + 3 NA intron (NR_104462, intron 2 of 3) L1M4|LINE|L1 -66673 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 804-44 chr3 180777705 180778107 + 3 NA intron (NR_109986, intron 4 of 13) L1PA15|LINE|L1 92272 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 356-252 chr2 99294551 99294754 + 3 NA intron (NM_174898, intron 3 of 6) L2c|LINE|L2 6545 NM_174898 129530 Hs.164589 NM_174898 ENSG00000144214 LYG1 SALW1939 lysozyme g1 protein-coding 457-8 chr1 95405022 95405302 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -53055 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 617-37 chr14 82127141 82127530 + 3 NA Intergenic Intergenic -384197 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 509-145 chr3 37826208 37826432 + 3 NA intron (NR_110532, intron 3 of 5) intron (NR_110532, intron 3 of 5) 35460 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 459-298 chr8 82280036 82280206 + 3 NA Intergenic L1MA1|LINE|L1 -437835 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 576-132 chr5 36823838 36824157 + 3 NA Intergenic L1PB2|LINE|L1 52697 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 911-30 chr8 134773339 134773781 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 27047 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 465-249 chr6 39294820 39295133 + 3 NA Intergenic Intergenic 19443 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 519-85 chr18 61751117 61751395 + 3 NA intron (NR_103449, intron 3 of 3) (TTTA)n|Simple_repeat|Simple_repeat 3080 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 441-268 chr8 126024835 126025132 + 3 NA Intergenic Intergenic -73786 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 318-179 chr15 46393800 46393997 + 3 NA Intergenic L1MA7|LINE|L1 688703 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 429-103 chr15 94515566 94515744 + 3 NA Intergenic HAL1ME|LINE|L1 159725 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 393-347 chr8 49345296 49345484 + 3 NA Intergenic Intergenic 166790 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 505-211 chr4 31442971 31443291 + 3 NA Intergenic Intergenic -63413 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 871-25 chr4 73971537 73972086 + 3 NA Intergenic L1PREC2|LINE|L1 10216 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 337-273 chr2 138132748 138132932 + 3 NA Intergenic Intergenic 30956 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 333-408 chr4 116292789 116292974 + 3 NA Intergenic Intergenic -6844 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 1079-5 chr19 43966882 43967435 + 3 NA exon (NM_001297588, exon 5 of 5) exon (NM_001297588, exon 5 of 5) 15913 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 502-134 chr2 26666833 26667096 + 3 NA Intergenic LTR16B1|LTR|ERVL -25598 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 342-85 chr11 11947260 11947403 + 3 NA intron (NM_001282659, intron 20 of 27) intron (NM_001282659, intron 20 of 27) 61308 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 778-22 chr14 63182567 63183079 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -21620 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 614-86 chr3 189778577 189778808 + 3 NA intron (NM_003722, intron 3 of 13) intron (NM_003722, intron 3 of 13) -10967 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 450-187 chr3 5856764 5857066 + 3 NA Intergenic Intergenic -606660 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 718-55 chr3 112122330 112122914 + 3 NA 3' UTR (NM_001190260, exon 5 of 5).2 3' UTR (NM_001190260, exon 5 of 5).2 9821 NR_030292 693152 NR_030292 ENSG00000207940 MIR567 MIRN567|hsa-mir-567 microRNA 567 ncRNA 471-71 chr12 106554993 106555169 + 3 NA intron (NR_040246, intron 1 of 3) MLT1D|LTR|ERVL-MaLR -27826 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 438-210 chr5 12148346 12148527 + 3 NA Intergenic L1PB4|LINE|L1 -243990 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 416-37 chr10 49194253 49194391 + 3 NA Intergenic Intergenic -5931 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 321-70 chr10 86278072 86278255 + 3 NA intron (NM_017551, intron 2 of 15) L1M1|LINE|L1 -13375 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 1012-6 chr21 28748800 28749471 + 3 NA Intergenic L3|LINE|CR1 136232 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 404-158 chr2 39970193 39970418 + 3 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 52671 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 744-7 chr10 7720662 7721175 + 3 NA exon (NM_002216, exon 7 of 21) exon (NM_002216, exon 7 of 21) 17602 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 815-2 chr1 68578518 68579023 + 3 NA Intergenic L1PA17|LINE|L1 -81688 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 499-57 chr12 94603419 94603685 + 3 NA intron (NM_020698, intron 1 of 3) L1ME3|LINE|L1 12449 NM_001301036 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 269-337 chr6 38735531 38735672 + 3 NA intron (NM_001371, intron 4 of 91) (TTCA)n|Simple_repeat|Simple_repeat 20290 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 511-155 chr21 21962584 21962835 + 3 NA Intergenic Intergenic 135750 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 405-280 chr6 76057920 76058098 + 3 NA intron (NM_001563, intron 1 of 16) intron (NM_001563, intron 1 of 16) 14653 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 567-182 chr8 77727212 77727454 + 3 NA Intergenic Intergenic 276636 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 719-61 chr5 36286631 36286976 + 3 NA intron (NM_001323279, intron 1 of 12) L2a|LINE|L2 15099 NM_001323279 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 335-191 chr16 82822516 82822659 + 3 NA intron (NR_110938, intron 1 of 2) AluJo|SINE|Alu 49268 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 594-98 chr4 30305163 30305524 + 3 NA Intergenic LTR16E1|LTR|ERVL -415026 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 370-31 chr10 5391393 5391648 + 3 NA Intergenic LTR45C|LTR|ERV1 13308 NM_024803 79861 Hs.163079 NM_024803 ENSG00000178462 TUBAL3 - tubulin alpha like 3 protein-coding 566-157 chr5 68853968 68854276 + 3 NA Intergenic L1PREC2|LINE|L1 175805 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 613-139 chr8 123919237 123919525 + 3 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 67394 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 633-14 chr10 66005441 66005775 + 3 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 434183 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 581-49 chr16 6791829 6792078 + 3 NA intron (NM_001142334, intron 1 of 13) MIR1_Amn|SINE|MIR 18144 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 822-8 chr10 68768571 68769152 + 3 NA intron (NR_104262, intron 16 of 23) intron (NR_104262, intron 16 of 23) 13689 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 213-5 chr1 69892280 69892364 + 3 NA intron (NM_001370785, intron 7 of 26) intron (NM_001370785, intron 7 of 26) -27000 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 439-239 chr5 173731270 173731561 + 3 NA intron (NR_108027, intron 1 of 2) MLT2D|LTR|ERVL 14794 NR_108027 101928136 Hs.449267 NR_108027 ENSG00000253686 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 576-58 chr15 69190214 69190471 + 3 NA intron (NM_001324093, intron 2 of 5) L1MEc|LINE|L1 29707 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 535-153 chr20 22639688 22640017 + 3 NA Intergenic L1M4|LINE|L1 -32335 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 484-166 chr3 28092708 28092989 + 3 NA Intergenic L1MC3|LINE|L1 -148771 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 499-274 chr8 137632676 137632903 + 3 NA Intergenic Intergenic -219201 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 786-2 chr1 80254198 80254602 + 3 NA Intergenic L2a|LINE|L2 -281355 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 689-79 chr5 32687729 32688190 + 3 NA Intergenic Intergenic -2913 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 423-66 chr13 44871136 44871315 + 3 NA Intergenic Intergenic -61595 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 915-12 chr2 216476189 216476550 + 3 NA intron (NM_001127207, intron 15 of 17) AluJb|SINE|Alu -22475 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 671-62 chr3 94682213 94682577 + 3 NA Intergenic L1PA10|LINE|L1 -255868 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 869-7 chr10 48558305 48558739 + 3 NA intron (NR_144642, intron 2 of 9) AluJb|SINE|Alu 46551 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 507-182 chr4 40427645 40427830 + 3 NA intron (NM_001098634, intron 6 of 6) intron (NM_001098634, intron 6 of 6) 74382 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 548-90 chr17 17392301 17392538 + 3 NA Intergenic LTR12_|LTR|ERV1 -84581 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 447-212 chr5 36334721 36334881 + 3 NA Intergenic Intergenic -32899 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 1542-2 chr2 60155733 60156552 + 3 NA Intergenic Intergenic 226894 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 761-35 chr21 30954166 30954635 + 3 NA Intergenic Intergenic -72820 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 467-257 chr7 11281716 11281937 + 3 NA Intergenic L1ME2z|LINE|L1 307954 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 486-201 chr3 45884058 45884285 + 3 NA intron (NM_001276379, intron 2 of 9) intron (NM_001276379, intron 2 of 9) -2333 NM_001256369 10803 Hs.225946 NM_006641 ENSG00000173585 CCR9 CC-CKR-9|CDw199|GPR-9-6|GPR28 C-C motif chemokine receptor 9 protein-coding 454-90 chr14 68614047 68614236 + 3 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 14646 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 447-271 chr8 96076607 96076800 + 3 NA Intergenic L1MEc|LINE|L1 84103 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 758-46 chr2 170910152 170910616 + 3 NA Intergenic L1MB5|LINE|L1 -18093 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 667-14 chr10 62287257 62287738 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -18653 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 510-125 chr19 52384926 52385110 + 3 NA exon (NM_001145434, exon 4 of 4) exon (NM_001145434, exon 4 of 4) 12739 NR_125345 102724105 Hs.188680 NR_125345 ENSG00000269834 ZNF528-AS1 - ZNF528 antisense RNA 1 ncRNA 632-27 chr14 84140556 84140771 + 3 NA Intergenic Intergenic -1131269 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 406-55 chr11 116654538 116654707 + 3 NA intron (NR_135069, intron 2 of 2) L2c|LINE|L2 15200 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 616-67 chr19 9570981 9571191 + 3 NA intron (NM_001308269, intron 1 of 4) ERVL-E-int|LTR|ERVL 13418 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 620-48 chr17 52184310 52184698 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -24487 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 667-109 chr8 29028685 29028971 + 3 NA intron (NM_001324384, intron 6 of 10) intron (NM_001324384, intron 6 of 10) 137514 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 655-77 chr3 13909992 13910358 + 3 NA Intergenic L1PB2|LINE|L1 -22881 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 582-77 chr2 135305930 135306238 + 3 NA intron (NM_001286569, intron 8 of 21) L1M2|LINE|L1 169456 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 513-178 chr3 63767989 63768286 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -51162 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 654-78 chr3 44175048 44175309 + 3 NA Intergenic Intergenic 60966 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 492-185 chr4 33644994 33645223 + 3 NA Intergenic UCON27|Unknown|Unknown 394785 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 376-102 chr14 48126524 48126759 + 3 NA Intergenic Intergenic -331627 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 643-85 chr4 61628085 61628557 + 3 NA intron (NM_001371343, intron 5 of 23) MIR|SINE|MIR 426149 NM_001371342 640-77 chr22 26524343 26524585 + 3 NA 3' UTR (NM_001362922, exon 6 of 6) 3' UTR (NM_001362922, exon 6 of 6) 11932 NR_144529 100507599 Hs.405877 NR_144529 LOC100507599 - uncharacterized LOC100507599 ncRNA 491-144 chr20 12136560 12136849 + 3 NA Intergenic L1MA4A|LINE|L1 218811 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 731-42 chr20 22965342 22965832 + 3 NA Intergenic LTR47A|LTR|ERVL -69833 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 448-237 chr6 45802703 45802946 + 3 NA Intergenic MER33|DNA|hAT-Charlie 134773 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 682-105 chr8 123578953 123579376 + 3 NA Intergenic Charlie7a|DNA|hAT-Charlie -37958 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 579-143 chr6 114755230 114755430 + 3 NA Intergenic Intergenic -692453 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 437-179 chr3 163436431 163436695 + 3 NA Intergenic L1MA3|LINE|L1 -133262 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 511-70 chr14 86713067 86713366 + 3 NA Intergenic Intergenic -192562 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 1057-15 chr6 113576592 113577134 + 3 NA Intergenic Intergenic 73212 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 567 chr1 30297687 30298000 + 3 NA Intergenic Intergenic -260231 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 244-19 chr1 169257669 169257809 + 3 NA intron (NR_104229, intron 7 of 12) L1PB3|LINE|L1 110058 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 580-199 chr8 107009392 107009708 + 3 NA Intergenic L1PB1|LINE|L1 -239306 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 314-395 chr3 152360993 152361167 + 3 NA intron (NM_001314057, intron 2 of 11) intron (NM_001314057, intron 2 of 11) -20090 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 553-121 chr2 102126612 102126989 + 3 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) -14991 NM_001320981 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 541-62 chr14 41897969 41898226 + 3 NA intron (NR_144388, intron 4 of 5) intron (NR_144388, intron 4 of 5) 291241 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 543-76 chr14 59990427 59990620 + 3 NA intron (NR_075071, intron 17 of 32) AluJr|SINE|Alu 70810 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 398-139 chr17 71870254 71870454 + 3 NA Intergenic Intergenic 155625 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 472-110 chr16 60147164 60147400 + 3 NA Intergenic Intergenic 212511 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 228-256 chr4 116353599 116353715 + 3 NA Intergenic Intergenic 53932 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 434-275 chr8 33085211 33085393 + 3 NA Intergenic L1M2a|LINE|L1 363467 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 522-53 chr11 99584382 99584681 + 3 NA intron (NM_175566, intron 1 of 21) Charlie1a|DNA|hAT-Charlie 28386 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 472-228 chr4 69573350 69573611 + 3 NA Intergenic Intergenic -47466 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 775-9 chr10 8787530 8787861 + 3 NA Intergenic L1MEd|LINE|L1 -110294 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 737-49 chr21 23772786 23773304 + 3 NA Intergenic Intergenic -388210 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 552-90 chr18 38534086 38534368 + 3 NA Intergenic L1M3c|LINE|L1 877092 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 414-232 chr4 56111780 56112049 + 3 NA Intergenic Intergenic -58281 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 323-506 chr7 83529725 83529929 + 3 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 111604 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 628-134 chr8 127121028 127121259 + 3 NA Intergenic AluSz6|SINE|Alu -38922 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 668-64 chr3 20885148 20885575 + 3 NA Intergenic L1ME2|LINE|L1 -520365 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 576-84 chr2 82006315 82006547 + 3 NA Intergenic Intergenic -539485 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 518-54 chr11 79816407 79816718 + 3 NA Intergenic L2c|LINE|L2 -375532 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 246-201 chr2 110951311 110951446 + 3 NA intron (NM_001142807, intron 12 of 17) L1MEd|LINE|L1 164210 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 555-170 chr6 15092393 15092660 + 3 NA Intergenic Intergenic -153543 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 660-19 chr12 38630765 38631241 + 3 NA Intergenic Intergenic 274588 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 523-288 chr9 111477517 111477818 + 3 NA intron (NM_001364929, intron 1 of 49) intron (NM_001364929, intron 1 of 49) 5895 NM_001364931 23392 Hs.368255 NM_001080398 ENSG00000136813 ECPAS ECM29|KIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 486-188 chr22 16984072 16984423 + 3 NA intron (NM_001037814, intron 3 of 9) L1M2|LINE|L1 23975 NM_001037814 128954 Hs.434113 NM_001037814 ENSG00000215568 GAB4 - GRB2 associated binding protein family member 4 protein-coding 874-27 chr6 84433849 84434323 + 3 NA intron (NR_132100, intron 4 of 4) intron (NR_132100, intron 4 of 4) 40843 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 413-231 chr5 15033076 15033273 + 3 NA Intergenic Intergenic -161396 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 454-72 chr12 65022718 65022963 + 3 NA Intergenic L2b|LINE|L2 -30549 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 407-80 chr14 47742806 47743017 + 3 NA Intergenic Intergenic 18193 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 372-332 chr3 105854217 105854370 + 3 NA intron (NR_135809, intron 2 of 18) intron (NR_135809, intron 2 of 18) 13298 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 431-11 chr1 71585722 71585966 + 3 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 251168 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 574-73 chr2 57931801 57932108 + 3 NA intron (NM_001288838, intron 1 of 15) L1MA9|LINE|L1 24303 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 995-7 chr17 6886363 6886857 + 3 NA intron (NR_002710, intron 2 of 13) L1MA3|LINE|L1 -7167 NR_120453 245 Hs.378695 NR_002710 ENSG00000262943 ALOX12P2 ALOX12E arachidonate 12-lipoxygenase pseudogene 2 pseudo 530-173 chr4 31894952 31895278 + 3 NA Intergenic Intergenic -102264 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 286-62 chr11 25115607 25115723 + 3 NA Intergenic Intergenic 618612 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 679-88 chr5 27419937 27420368 + 3 NA Intergenic L1MA3|LINE|L1 -52140 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 254-401 chr8 31797353 31797496 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 157672 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 816-40 chr6 40553253 40553703 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 33886 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 523-50 chr11 39399568 39399869 + 3 NA Intergenic L1MC2|LINE|L1 750860 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 345-349 chr3 59587854 59588041 + 3 NA Intergenic L1M2|LINE|L1 70550 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 459-269 chr7 3881783 3881993 + 3 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -247797 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 692-48 chr2 104079190 104079458 + 3 NA Intergenic L1MC1|LINE|L1 329008 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 440-192 chr5 23455878 23456215 + 3 NA Intergenic Intergenic -51563 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 681-42 chr2 234761595 234762010 + 3 NA Intergenic Intergenic 79134 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 439-313 chrX 63951347 63951548 + 3 NA Intergenic L1MB3|LINE|L1 -165360 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 529-149 chr3 168953389 168953663 + 3 NA Intergenic Intergenic 51581 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 192-81 chr16 83293197 83293271 + 3 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -215112 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 715-48 chr21 31975558 31975962 + 3 NA intron (NM_014586, intron 7 of 10) Charlie7|DNA|hAT-Charlie 102740 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 902-15 chr18 7836174 7836575 + 3 NA intron (NM_002845, intron 2 of 30) L1MA2|LINE|L1 269058 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 454-349 chrX 65908774 65909061 + 3 NA Intergenic L1M4|LINE|L1 -109953 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 538-145 chr3 5519278 5519551 + 3 NA Intergenic MIR|SINE|MIR -269159 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 600-132 chr8 120967182 120967529 + 3 NA Intergenic Intergenic -155309 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 347-566 chrX 100749020 100749185 + 3 NA Intergenic Tigger7|DNA|TcMar-Tigger -16981 NM_001129896 94121 Hs.592224 NM_080737 ENSG00000102362 SYTL4 SLP4 synaptotagmin like 4 protein-coding 696-15 chr10 85811252 85811582 + 3 NA intron (NM_017551, intron 8 of 15) L1M2c|LINE|L1 233686 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 317-419 chr6 84292812 84293042 + 3 NA Intergenic HAL1M8|LINE|L1 -65284 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 566-134 chr3 160149534 160149764 + 3 NA intron (NR_108088, intron 3 of 9) intron (NR_108088, intron 3 of 9) 57443 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 443-130 chr18 41466901 41467149 + 3 NA Intergenic Intergenic 53652 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 169-98 chr5 64045853 64045923 + 3 NA Intergenic L1M1|LINE|L1 -83596 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 665-93 chr7 57436037 57436456 + 3 NA Intergenic Intergenic -13931 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 676-12 chr1 186822713 186823183 + 3 NA Intergenic Intergenic -5952 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 250-5 chr1 63182122 63182268 + 3 NA intron (NR_038252, intron 6 of 11) (CATA)n|Simple_repeat|Simple_repeat 135062 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 422-3 chr1 33826965 33827190 + 3 NA intron (NM_052896, intron 6 of 69) L2a|LINE|L2 -33398 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 367-88 chr12 30595003 30595199 + 3 NA Intergenic Intergenic 82143 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 1077 chr10 115991659 115992315 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 202802 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 613-21 chr10 129714929 129715281 + 3 NA intron (NM_002412, intron 3 of 4) intron (NM_002412, intron 3 of 4) 128269 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 765-37 chr22 30978589 30978948 + 3 NA non-coding (NR_152867, exon 4 of 4) non-coding (NR_152867, exon 4 of 4) 9557 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 589-50 chr18 54108517 54108746 + 3 NA Intergenic Intergenic 113781 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 715-20 chr14 99113679 99114007 + 3 NA Intergenic L1MEi|LINE|L1 158354 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 274-238 chr20 43725579 43725758 + 3 NA TTS (NM_001008901) TTS (NM_001008901) 1334 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 495-106 chr2 43168096 43168371 + 3 NA Intergenic Intergenic 58373 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 452-283 chr9 883833 883994 + 3 NA intron (NM_001363767, intron 2 of 4) intron (NM_001363767, intron 2 of 4) 40624 NM_001363767 1761 Hs.98586 NM_021951 ENSG00000137090 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 416-39 chr10 52132915 52133153 + 3 NA intron (NM_001098512, intron 7 of 17) L1MA1|LINE|L1 181094 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 804-18 chr14 34925877 34926262 + 3 NA intron (NR_151701, intron 2 of 4) FRAM|SINE|Alu -13853 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 447-167 chr3 53565544 53565789 + 3 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 71055 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 353-523 chr8 77516673 77516922 + 3 NA Intergenic Intergenic 66100 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 395-353 chr9 75166356 75166558 + 3 NA Intergenic L1MB4|LINE|L1 77943 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 746-65 chr6 124761374 124761771 + 3 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -200973 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 398-73 chr12 33236853 33237115 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 202835 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 585-94 chr3 7107177 7107505 + 3 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -213324 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 599-73 chr20 54501868 54502111 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 26396 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 380-106 chr13 28423814 28424049 + 3 NA intron (NM_002019, intron 10 of 29) intron (NM_002019, intron 10 of 29) 71197 NM_002019 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 686-71 chr6 66821826 66822170 + 3 NA Intergenic L1PA8|LINE|L1 1034119 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 417-18 chr1 210899036 210899198 + 3 NA intron (NM_002238, intron 7 of 10) Charlie1b|DNA|hAT-Charlie 234257 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 534-120 chr2 98323413 98323741 + 3 NA Intergenic L1M4a1|LINE|L1 -22578 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 354-47 chr10 39527965 39528096 + 3 NA Intergenic ALR/Alpha|Satellite|centr 831434 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 331-340 chr3 16758998 16759173 + 3 NA Intergenic L1MA2|LINE|L1 -125870 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 447-145 chr2 192960713 192960978 + 3 NA Intergenic Intergenic 211000 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 691-78 chr7 7855445 7855842 + 3 NA intron (NM_001302350, intron 4 of 4) THE1D-int|LTR|ERVL-MaLR 113109 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 461-250 chr7 46898440 46898670 + 3 NA Intergenic L3|LINE|CR1 -201433 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 342-151 chr14 84955597 84955826 + 3 NA Intergenic Intergenic -316221 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 502-183 chr3 102321704 102321911 + 3 NA Intergenic L1PA15|LINE|L1 -113208 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 407-342 chr9 36789986 36790273 + 3 NA Intergenic Intergenic 33470 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 915-25 chr5 151837782 151838380 + 3 NA intron (NM_000171, intron 7 of 8) L1MB7|LINE|L1 -65905 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 793-21 chr16 80883057 80883568 + 3 NA intron (NR_131948, intron 1 of 2) intron (NR_131948, intron 1 of 2) 9284 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 544-146 chr3 45303519 45303899 + 3 NA Intergenic L1M4b|LINE|L1 -77422 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 655-132 chr8 129057647 129057959 + 3 NA Intergenic Intergenic -91802 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 481-213 chr4 30564605 30564789 + 3 NA Intergenic L1MA6|LINE|L1 -155672 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 764-18 chr12 40077697 40077990 + 3 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 28238 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 494-241 chr6 23135383 23135752 + 3 NA Intergenic L1MA4|LINE|L1 -417643 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 480-55 chr12 28917382 28917643 + 3 NA Intergenic L1PA16|LINE|L1 -231766 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 353-203 chr18 2384399 2384556 + 3 NA Intergenic Intergenic 187028 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 473-244 chr6 113438784 113439112 + 3 NA Intergenic Intergenic -5501 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 535-68 chr13 99764066 99764320 + 3 NA intron (NR_120421, intron 3 of 4) AluJb|SINE|Alu -35192 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 609-62 chr2 209377365 209377647 + 3 NA Intergenic Intergenic -46541 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 254-112 chr14 54018763 54018923 + 3 NA Intergenic L1PREC2|LINE|L1 -61952 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 669-28 chr14 67926954 67927355 + 3 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 103562 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 549-65 chr15 57045350 57045694 + 3 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 126077 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 816-56 chrX 80790625 80790998 + 3 NA intron (NM_153252, intron 6 of 40) intron (NM_153252, intron 6 of 40) 19066 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 342-170 chr15 99044642 99044869 + 3 NA Intergenic AluSx|SINE|Alu 30051 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 853-44 chr8 129330227 129330707 + 3 NA Intergenic LTR16C|LTR|ERVL -89227 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 512-103 chr18 4016766 4017095 + 3 NA intron (NM_001242761, intron 2 of 11) MIRb|SINE|MIR 54577 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 235-407 chrX 76653457 76653539 + 3 NA Intergenic L1M4|LINE|L1 225788 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 361-450 chr8 90821465 90821631 + 3 NA intron (NM_022351, intron 2 of 12) L2c|LINE|L2 29773 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 530-228 chr7 19617993 19618315 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger 87282 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 565-115 chr3 75234587 75234838 + 3 NA Intergenic Intergenic 20236 NR_049831 100846999 NR_049831 ENSG00000266780 MIR4444-2 - microRNA 4444-2 ncRNA 311-73 chr10 125580055 125580171 + 3 NA intron (NM_001318133, intron 3 of 3) intron (NM_001318133, intron 3 of 3) 5742 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 652-16 chr10 36068499 36068960 + 3 NA Intergenic Intergenic 290427 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 422-129 chr18 66482204 66482417 + 3 NA Intergenic Intergenic 121780 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 330-533 chr8 128473463 128473643 + 3 NA intron (NR_121672, intron 2 of 7) L1MC4|LINE|L1 91126 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 872-43 chr6 126047308 126047692 + 3 NA intron (NR_146803, intron 15 of 16) LTR1F|LTR|ERV1 60960 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 694-50 chr17 53825790 53826217 + 3 NA TTS (NM_032559) TTS (NM_032559) 3076 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 637-44 chr15 92888117 92888476 + 3 NA intron (NR_037602, intron 3 of 4) intron (NR_037602, intron 3 of 4) 5000 NR_037602 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 460-24 chr10 11241598 11241851 + 3 NA intron (NM_001025076, intron 3 of 13) intron (NM_001025076, intron 3 of 13) 76694 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 366-85 chr11 95345694 95345864 + 3 NA Intergenic Intergenic -113304 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 595-128 chr5 23661425 23661683 + 3 NA Intergenic Intergenic 153899 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 255-131 chr15 89268851 89269003 + 3 NA intron (NM_001113378, intron 10 of 37) intron (NM_001113378, intron 10 of 37) 24948 NM_018193 55215 Hs.513126 NM_018193 ENSG00000140525 FANCI KIAA1794 FA complementation group I protein-coding 411-179 chr3 50050557 50050742 + 3 NA intron (NM_001349194, intron 4 of 17) L1MB5|LINE|L1 -38270 NR_036627 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 518-33 chr10 77954670 77954917 + 3 NA Intergenic AluSx1|SINE|Alu 27981 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 648-127 chr6 76872491 76872886 + 3 NA Intergenic L1PA14|LINE|L1 -279065 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 1159 chr11 100406135 100406702 + 3 NA Intergenic MIRc|SINE|MIR -280870 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 511-222 chr6 39992863 39993037 + 3 NA Intergenic Intergenic -58488 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 475-233 chr5 145624700 145624876 + 3 NA Intergenic L1ME3F|LINE|L1 210554 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 552-51 chr13 29136944 29137168 + 3 NA intron (NM_001033602, intron 3 of 13) MER21B|LTR|ERVL 112599 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 348-267 chr20 41016448 41016623 + 3 NA intron (NR_145525, intron 2 of 2) L2a|LINE|L2 -12287 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 757-42 chr3 177676141 177676678 + 3 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -140456 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 533-13 chr10 29043389 29043781 + 3 NA Intergenic L1MC5a|LINE|L1 197177 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 940-16 chr20 2605890 2606506 + 3 NA intron (NM_080751, intron 11 of 19) HAL1M8|LINE|L1 -46434 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 472-238 chr4 156766881 156767214 + 3 NA intron (NM_016205, intron 5 of 5) intron (NM_016205, intron 5 of 5) 204752 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 690-16 chr11 26357371 26357854 + 3 NA intron (NM_031418, intron 1 of 26) L1ME1|LINE|L1 25482 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 424-230 chr5 150911502 150911668 + 3 NA Intergenic L1M3de|LINE|L1 -6602 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 634-55 chr14 62828934 62829378 + 3 NA intron (NM_139318, intron 8 of 10) THE1D-int|LTR|ERVL-MaLR 216302 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 492-50 chr12 1552643 1553022 + 3 NA Intergenic Intergenic -20640 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 338-492 chr7 21802953 21803215 + 3 NA intron (NM_001277115, intron 62 of 81) intron (NM_001277115, intron 62 of 81) 142815 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 801-29 chr2 81559172 81559690 + 3 NA Intergenic L1MC1|LINE|L1 -92485 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 446-78 chr12 60207659 60207828 + 3 NA Intergenic Intergenic 518373 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 489-249 chr8 30952386 30952589 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -39479 NM_001350162 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 621-68 chr21 30171540 30171894 + 3 NA Intergenic AluSg|SINE|Alu -4912 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 454-196 chr21 41157207 41157418 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -9248 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 527-11 chr1 179405996 179406342 + 3 NA intron (NR_073544, intron 11 of 25) L1M2|LINE|L1 40125 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 704-11 chr10 82528768 82529086 + 3 NA intron (NR_163253, intron 3 of 10) BLACKJACK|DNA|hAT-Blackjack -296007 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 506-52 chr11 31571634 31571976 + 3 NA intron (NM_001288725, intron 3 of 10) Tigger1|DNA|TcMar-Tigger 62038 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 373-396 chr8 29971049 29971196 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -13774 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 568-98 chr2 19390661 19390943 + 3 NA Intergenic Intergenic -32179 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 589-106 chr4 59206228 59206436 + 3 NA Intergenic Intergenic 192759 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 657-42 chr17 74644272 74644560 + 3 NA Intergenic L1MDa|LINE|L1 -20678 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 360-293 chr3 14712727 14712919 + 3 NA intron (NM_001184957, intron 7 of 16) L1M4|LINE|L1 37682 NM_032137 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 636-124 chr6 46065053 46065327 + 3 NA intron (NM_001370649, intron 1 of 5) L1ME1|LINE|L1 15158 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 447-7 chr1 115120053 115120354 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -30700 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 262-42 chr10 31475155 31475280 + 3 NA intron (NM_001323678, intron 2 of 6) L1PA3|LINE|L1 -75462 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 451-88 chr16 86338026 86338337 + 3 NA non-coding (NR_024406, exon 3 of 7) non-coding (NR_024406, exon 3 of 7) 7498 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 458-193 chr4 141604108 141604362 + 3 NA Intergenic L1MC2|LINE|L1 -32348 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 350-529 chr8 116614933 116615140 + 3 NA Intergenic Intergenic -37064 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 361-304 chr3 134894526 134894675 + 3 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 99340 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 329-509 chr6 140715704 140715947 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner 32011 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 442-170 chr21 27064908 27065106 + 3 NA Intergenic L1PA16|LINE|L1 -97919 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 493-226 chr4 66953983 66954284 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 467867 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 436-131 chr2 59721139 59721481 + 3 NA Intergenic Intergenic 503602 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 544-170 chr5 11609487 11609738 + 3 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -20546 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 282-108 chr13 36430133 36430284 + 3 NA Intergenic Intergenic -1622 NM_001111046 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 675-41 chr2 5292860 5293266 + 3 NA Intergenic Intergenic 398055 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 565-80 chr2 77433956 77434215 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 88291 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 340-98 chr12 7100255 7100456 + 3 NA intron (NM_001297642, intron 3 of 5) L1ME4b|LINE|L1 -7910 NM_001733 715 Hs.524224 NM_001733 ENSG00000159403 C1R EDSPD1 complement C1r protein-coding 683-75 chr6 125671661 125672142 + 3 NA Intergenic L1MC4|LINE|L1 -2452 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 353-527 chr8 84510846 84510990 + 3 NA intron (NM_001354308, intron 2 of 9) L1MA7|LINE|L1 95434 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 209-233 chr4 119042182 119042291 + 3 NA 3' UTR (NM_001128933, exon 4 of 4) 3' UTR (NM_001128933, exon 4 of 4) -93548 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 404-205 chr22 49329216 49329370 + 3 NA Intergenic MER20|DNA|hAT-Charlie 214173 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 408-78 chr12 33324841 33325021 + 3 NA Intergenic Intergenic 114888 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 646-11 chr1 222933060 222933466 + 3 NA intron (NM_001369594, intron 1 of 7) intron (NM_001369594, intron 1 of 7) 4839 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 529-126 chr20 5384191 5384454 + 3 NA Intergenic L1MA4A|LINE|L1 61426 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 220-246 chr3 181438590 181438663 + 3 NA non-coding (NR_125407, exon 3 of 5) non-coding (NR_125407, exon 3 of 5) 3860 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 692-25 chr14 25568818 25569163 + 3 NA Intergenic L1MA2|LINE|L1 -518693 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 760-60 chr5 89790681 89791152 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 225804 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 754-44 chr2 139703823 139704378 + 3 NA Intergenic Intergenic 806776 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 1715-4 chr5 119262608 119263726 + 3 NA Intergenic Intergenic -5592 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 652-101 chr6 39599697 39600046 + 3 NA intron (NM_001289020, intron 6 of 21) intron (NM_001289020, intron 6 of 21) 125537 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 535-11 chr1 75981647 75981915 + 3 NA Intergenic Intergenic -29543 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 479-245 chr8 75692510 75692702 + 3 NA Intergenic Intergenic 152638 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 526-248 chr8 103672528 103672816 + 3 NA intron (NM_001348488, intron 3 of 25) MSTA|LTR|ERVL-MaLR -146548 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 580-129 chr4 17159507 17159854 + 3 NA Intergenic L1PB1|LINE|L1 26377 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 694-96 chr4 122774196 122774505 + 3 NA Intergenic Intergenic 41646 NM_152618 166379 Hs.400698 NM_152618 ENSG00000181004 BBS12 C4orf24 Bardet-Biedl syndrome 12 protein-coding 722-57 chr4 71219175 71219477 + 3 NA intron (NM_001098484, intron 1 of 25) Tigger1|DNA|TcMar-Tigger 32040 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 408-21 chr1 154086227 154086414 + 3 NA intron (NM_001159484, intron 16 of 37) L1MB7|LINE|L1 18272 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 655-3 chr1 60177318 60177668 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -103723 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 259-433 chr9 91828880 91829013 + 3 NA intron (NM_001318204, intron 1 of 7) L1ME4a|LINE|L1 121282 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 575-152 chr5 84000333 84000684 + 3 NA intron (NM_001278642, intron 8 of 9) L1M1|LINE|L1 -279653 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 476-68 chr12 129396939 129397123 + 3 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 188430 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 581-108 chr3 195011559 195011944 + 3 NA Intergenic L1ME3|LINE|L1 -82837 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 596-146 chr7 26724636 26724889 + 3 NA intron (NM_003930, intron 9 of 12) intron (NM_003930, intron 9 of 12) 86891 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 717-53 chr22 47486388 47486726 + 3 NA intron (NR_109967, intron 1 of 2) L1MCb|LINE|L1 554 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 998-11 chr19 36392685 36393298 + 3 NA exon (NM_133466, exon 5 of 5) exon (NM_133466, exon 5 of 5) -13790 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 362-121 chr12 65435154 65435292 + 3 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 122088 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 515-165 chr3 97120942 97121202 + 3 NA intron (NM_001080448, intron 3 of 17) MIRc|SINE|MIR 306478 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 567-109 chr3 5989514 5989738 + 3 NA Intergenic Intergenic -739371 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 370-107 chr12 16392756 16393000 + 3 NA Intergenic L1MC4|LINE|L1 39461 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 618-64 chr2 134613451 134613788 + 3 NA intron (NM_030923, intron 2 of 7) L1M4|LINE|L1 105381 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 981-23 chr5 46070602 46070989 + 3 NA Intergenic ALR/Alpha|Satellite|centr -374415 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 471-91 chr15 60161748 60162041 + 3 NA Intergenic Intergenic 157583 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 524-59 chr13 109510472 109510647 + 3 NA Intergenic Intergenic 109863 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 769-3 chr1 83076914 83077305 + 3 NA intron (NR_147074, intron 6 of 10) MIRb|SINE|MIR -90901 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 403-21 chr1 219726961 219727197 + 3 NA Intergenic L1M2c|LINE|L1 -113934 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 297-433 chr7 44177495 44177665 + 3 NA intron (NM_001354800, intron 1 of 10) MER53|DNA|hAT 11859 NM_000162 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 1223-6 chr18 60770612 60771380 + 3 NA Intergenic Intergenic -398221 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 562-81 chr17 69960036 69960472 + 3 NA Intergenic Intergenic -1453 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 584-38 chr12 124136519 124136873 + 3 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) -152468 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 446-131 chr18 14064427 14064722 + 3 NA Intergenic Intergenic 67861 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 566-30 chr12 33616404 33616602 + 3 NA Intergenic Intergenic -176684 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 412-95 chr14 68679978 68680175 + 3 NA intron (NM_001321818, intron 10 of 10) MER63C|DNA|hAT-Blackjack -51289 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 806-6 chr10 106843455 106843838 + 3 NA intron (NM_001206569, intron 2 of 25) AluY|SINE|Alu 321060 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 388-118 chr15 100174106 100174326 + 3 NA intron (NM_139057, intron 8 of 21) intron (NM_139057, intron 8 of 21) 167759 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 780-42 chr3 184402261 184402582 + 3 NA intron (NR_161198, intron 1 of 2) MER2|DNA|TcMar-Tigger 884 NR_161199 105374250 Hs.129464 NR_161198 LINC02054 - long intergenic non-protein coding RNA 2054 ncRNA 459-214 chr4 67670518 67670682 + 3 NA intron (NM_018227, intron 7 of 32) intron (NM_018227, intron 7 of 32) 30555 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 444-66 chr14 32265803 32265988 + 3 NA Intergenic L1ME4a|LINE|L1 -62626 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 531-36 chr11 80779414 80779690 + 3 NA Intergenic Intergenic -16749 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 397-258 chr5 80372551 80372732 + 3 NA Intergenic Intergenic -20675 NR_003665 441089 Hs.568291 NR_003665 CRSP8P - mediator complex subunit 27 pseudogene pseudo 720-64 chr4 104066598 104066932 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -346780 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 439-46 chr11 17983736 17983978 + 3 NA intron (NR_104040, intron 8 of 11) L2a|LINE|L2 29190 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 582-69 chr2 58702780 58703132 + 3 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 182203 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 497-109 chr19 46327605 46327924 + 3 NA intron (NM_152796, intron 10 of 11) MER77B|LTR|ERVL -19323 NM_001204284 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 528-177 chr4 60999786 61000041 + 3 NA Intergenic L1M3d|LINE|L1 77294 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 436-32 chr10 49267823 49268053 + 3 NA Intergenic L1MDa|LINE|L1 30955 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 466-297 chrX 7783652 7783903 + 3 NA Intergenic Intergenic -58485 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 560-175 chr7 68825901 68826264 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 771542 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 619-98 chr5 4565630 4566015 + 3 NA Intergenic L1M1|LINE|L1 -207659 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 286-268 chr3 18928014 18928157 + 3 NA Intergenic (ATAATTT)n|Simple_repeat|Simple_repeat -220425 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 440-137 chr2 239710083 239710288 + 3 NA Intergenic L1MB8|LINE|L1 -52675 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 429-137 chr19 56663353 56663608 + 3 NA 3' UTR (NM_001005850, exon 2 of 2) 3' UTR (NM_001005850, exon 2 of 2) 8277 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 591-39 chr14 72392281 72392659 + 3 NA intron (NM_001370288, intron 3 of 16) MLT2F|LTR|ERVL -124350 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 406-89 chr14 87354137 87354307 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 301072 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 486-113 chr17 58912248 58912410 + 3 NA intron (NM_014906, intron 1 of 6) LTR10B1|LTR|ERV1 156460 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 397-88 chr14 53464914 53465172 + 3 NA Intergenic Tigger16a|DNA|TcMar-Tigger 311689 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 339-385 chr3 175030726 175031002 + 3 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 84378 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 479-188 chr5 19240605 19240911 + 3 NA Intergenic Intergenic 645514 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 883-43 chr9 65055356 65055927 + 3 NA Intergenic ALR/Alpha|Satellite|centr -87417 NR_160671 105379443 NR_160670 LOC105379443 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene pseudo 472-142 chr19 46557896 46558127 + 3 NA intron (NM_001370550, intron 1 of 2) LTR37-int|LTR|ERV1 42905 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 644-43 chr2 170909410 170909774 + 3 NA Intergenic L1MB5|LINE|L1 -18885 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 504-14 chr1 190086300 190086617 + 3 NA Intergenic Intergenic 389552 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 432-145 chr2 193511741 193511890 + 3 NA Intergenic Intergenic 761970 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 464-174 chr3 176007861 176008055 + 3 NA Intergenic L3|LINE|CR1 -231625 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 370-99 chr11 110627515 110627702 + 3 NA intron (NM_020809, intron 4 of 15) intron (NM_020809, intron 4 of 15) 84217 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 524-123 chr2 161534504 161534784 + 3 NA Intergenic L1M3b|LINE|L1 -26742 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 500-86 chr14 86182386 86182621 + 3 NA Intergenic L1PA16|LINE|L1 247825 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 292-114 chr12 103396419 103396536 + 3 NA intron (NR_103526, intron 3 of 10) (AT)n|Simple_repeat|Simple_repeat 99491 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 667-44 chr2 6847935 6848227 + 3 NA TTS (NM_207315) TTS (NM_207315) -7617 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 258-214 chr2 214045623 214045715 + 3 NA intron (NR_047660, intron 12 of 14) L1MA3|LINE|L1 287602 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 556-80 chr17 59608113 59608486 + 3 NA TTS (NM_001166301) TTS (NM_001166301) -11390 NM_001288653 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 359-8 chr1 56540005 56540207 + 3 NA intron (NM_003713, intron 1 of 5) MIRb|SINE|MIR 39457 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 1032-24 chr8 133601097 133601575 + 3 NA Intergenic MER58C|DNA|hAT-Charlie -29449 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 768-21 chr16 17926567 17926872 + 3 NA Intergenic Intergenic 405943 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 416-240 chr3 196946284 196946473 + 3 NA TTS (NM_025163) TTS (NM_025163) 3704 NM_001355243 152217 Hs.118820 NM_001355243 ENSG00000270170 NCBP2AS2 HIAR|NCBP2-AS2 NCBP2 antisense 2 (head to head) protein-coding 631-102 chr5 88614403 88614736 + 3 NA intron (NR_152235, intron 2 of 3) L1MC3|LINE|L1 52370 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 455-10 chr1 102847906 102848139 + 3 NA Intergenic L1MA2|LINE|L1 260474 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 495-238 chr7 62756674 62756850 + 3 NA Intergenic ALR/Alpha|Satellite|centr 547294 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 529-40 chr11 129297316 129297492 + 3 NA Intergenic Intergenic -14240 NR_145484 399975 NM_207431 LOC399975 - uncharacterized LOC399975 ncRNA 410-39 chr10 72553065 72553230 + 3 NA intron (NM_006077, intron 3 of 11) intron (NM_006077, intron 3 of 11) -29161 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 577-60 chr14 81900019 81900361 + 3 NA Intergenic L1MA8|LINE|L1 -157052 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 492-39 chr11 58322160 58322423 + 3 NA Intergenic L1MB8|LINE|L1 36778 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 368-442 chr8 32313448 32313715 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -127165 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 708-44 chr3 30873640 30874062 + 3 NA intron (NM_207359, intron 1 of 14) intron (NM_207359, intron 1 of 14) 20810 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 512-60 chr12 25265394 25265676 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -14606 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 538-238 chr8 108381292 108381579 + 3 NA Intergenic Intergenic -62148 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 564-84 chr19 27892787 27893082 + 3 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -98994 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 449-4 chr1 64441502 64441687 + 3 NA Intergenic L2b|LINE|L2 -28535 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 539-113 chr2 81022340 81022544 + 3 NA Intergenic L1PB2|LINE|L1 444504 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 399-205 chr3 41413336 41413576 + 3 NA intron (NR_136342, intron 32 of 34) L1M4|LINE|L1 213951 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 618-7 chr1 105808936 105809313 + 3 NA Intergenic L1M1|LINE|L1 -190189 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 716-40 chr20 21423591 21424018 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -26278 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 143-74 chr6 121156248 121156341 + 3 NA intron (NR_104452, intron 27 of 35) L1P4a|LINE|L1 178186 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 641-34 chr14 45666475 45666797 + 3 NA Intergenic L1MA4|LINE|L1 48966 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 959-4 chr10 116033759 116034375 + 3 NA Intergenic L1M4b|LINE|L1 160722 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 380-188 chr2 103958039 103958172 + 3 NA Intergenic Intergenic 450227 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 503-7 chr1 48630244 48630546 + 3 NA intron (NM_001323575, intron 9 of 12) intron (NM_001323575, intron 9 of 12) 146496 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 435-181 chr5 9107722 9107915 + 3 NA intron (NM_003966, intron 16 of 22) intron (NM_003966, intron 16 of 22) -53923 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 396-321 chr7 5094711 5094947 + 3 NA Intergenic L1M4|LINE|L1 22769 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 548-13 chr1 197427626 197428069 + 3 NA exon (NM_001257965, exon 9 of 15) exon (NM_001257965, exon 9 of 15) 159595 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 576-164 chr8 59867843 59868185 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 413386 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 288-66 chr11 29065818 29065954 + 3 NA Intergenic Intergenic -528527 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 596-162 chr8 65393471 65393768 + 3 NA Intergenic Intergenic 169047 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 694-25 chr12 13542325 13542789 + 3 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -165812 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 386-367 chr8 136010740 136011052 + 3 NA Intergenic Intergenic -519902 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 441-184 chr4 90765149 90765428 + 3 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 530257 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 390-157 chr18 55826406 55826563 + 3 NA Intergenic L1MB3|LINE|L1 -44759 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 669-104 chr7 54905360 54905674 + 3 NA Intergenic MER41D|LTR|ERV1 -113500 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 483-109 chr2 40717626 40717825 + 3 NA Intergenic Intergenic -205290 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 287-450 chrX 58444284 58444477 + 3 NA Intergenic ALR/Alpha|Satellite|centr -533747 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 606-172 chr8 139454734 139455118 + 3 NA Intergenic Intergenic 248197 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 487-23 chr1 180380761 180380965 + 3 NA intron (NM_032360, intron 6 of 7) L1MA4A|LINE|L1 57527 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 423-12 chr1 101145175 101145398 + 3 NA Intergenic L2c|LINE|L2 91242 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 757-19 chr15 57479699 57480202 + 3 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) 103445 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 518-65 chr12 65690208 65690497 + 3 NA Intergenic Intergenic -47980 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 446-93 chr13 45568459 45568686 + 3 NA intron (NM_182542, intron 8 of 14) intron (NM_182542, intron 8 of 14) 47167 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 856-44 chr6 169944583 169944922 + 3 NA Intergenic L1ME1|LINE|L1 -17871 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 726-17 chr12 40551894 40552258 + 3 NA intron (NM_173600, intron 158 of 173) L1PA16|LINE|L1 -140363 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 593-13 chr10 41795111 41795424 + 3 NA Intergenic ALR/Alpha|Satellite|centr 572778 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 488-247 chr6 151624956 151625160 + 3 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -65438 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 783-51 chr3 29326185 29326668 + 3 NA intron (NM_001003792, intron 1 of 13) L2c|LINE|L2 45114 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 448-311 chrX 150383813 150384048 + 3 NA intron (NM_001177465, intron 1 of 4) L1MB7|LINE|L1 20613 NM_001177465 10046 Hs.20136 NM_005491 ENSG00000013619 MAMLD1 CG1|CXorf6|F18|HYSP2 mastermind like domain containing 1 protein-coding 566-17 chr10 105580789 105581118 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie 239380 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 703-67 chr4 71854696 71855096 + 3 NA Intergenic Intergenic -49376 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 565-101 chr20 43418449 43418679 + 3 NA Intergenic L1M2c|LINE|L1 -39332 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 378-289 chr3 96062011 96062222 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -297848 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 487-28 chr1 208715426 208715700 + 3 NA Intergenic Intergenic -13125 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 468-39 chr10 116780389 116780596 + 3 NA intron (NM_001330164, intron 2 of 12) AluJb|SINE|Alu -37926 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 1205-8 chr5 135519314 135519976 + 3 NA Intergenic L1MCc|LINE|L1 16319 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 493-309 chr8 142443794 142444031 + 3 NA Intergenic Intergenic -5737 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 943-19 chr3 5458543 5458996 + 3 NA Intergenic Intergenic -208514 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 291-342 chr5 40089031 40089197 + 3 NA Intergenic MER4-int|LTR|ERV1 36823 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 262-341 chr5 42071208 42071359 + 3 NA Intergenic L2-1_AMi|LINE|L2 104062 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 288-337 chr5 114910418 114910585 + 3 NA Intergenic L1MC1|LINE|L1 -137088 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 393-111 chr15 37294068 37294271 + 3 NA Intergenic Intergenic -192858 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 293-328 chr5 12371826 12372048 + 3 NA Intergenic Intergenic -202920 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 536-57 chr12 40378321 40378519 + 3 NA Intergenic Intergenic -14974 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 464-13 chr1 247975736 247975977 + 3 NA intron (NM_001304535, intron 1 of 1) intron (NM_001304535, intron 1 of 1) 10524 NM_001004491 391191 Hs.690413 NM_001004491 ENSG00000187080 OR2AK2 OR1-47|OR2AK1P olfactory receptor family 2 subfamily AK member 2 protein-coding 349-441 chr6 41296641 41296810 + 3 NA Intergenic L1PA15|LINE|L1 -9980 NR_136332 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 701-102 chr8 136861260 136861619 + 3 NA intron (NR_147196, intron 4 of 5) L1MC|LINE|L1 330641 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 711-43 chr22 34013834 34014302 + 3 NA Intergenic L1MCb|LINE|L1 -91180 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 875-22 chr4 13080653 13081098 + 3 NA Intergenic L2a|LINE|L2 403465 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 713-20 chr13 48554656 48555150 + 3 NA Intergenic L1M2|LINE|L1 -19008 NM_001352429 1102 Hs.652712 NM_001268 ENSG00000136161 RCBTB2 CHC1L|RLG RCC1 and BTB domain containing protein 2 protein-coding 453-216 chr5 157042995 157043315 + 3 NA intron (NM_001173393, intron 5 of 8) intron (NM_001173393, intron 5 of 8) 15086 NM_012206 26762 Hs.129711 NM_012206 ENSG00000113249 HAVCR1 CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 739-44 chr20 55733012 55733323 + 3 NA Intergenic Intergenic 272352 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 264-71 chr11 9818399 9818552 + 3 NA intron (NM_030962, intron 28 of 39) intron (NM_030962, intron 28 of 39) -20667 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 704-42 chr2 106951410 106951780 + 3 NA Intergenic L1M2|LINE|L1 -64486 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 425-180 chr3 34359605 34359807 + 3 NA Intergenic Intergenic 561076 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 469-75 chr13 44672442 44672614 + 3 NA intron (NR_149082, intron 3 of 3) intron (NR_149082, intron 3 of 3) 32159 NR_149082 106144541 Hs.578031 NR_149082 LINC00407 - long intergenic non-protein coding RNA 407 ncRNA 927-25 chr8 26984792 26985394 + 3 NA Intergenic L1M7|LINE|L1 63870 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 1481-3 chr2 76710617 76711446 + 3 NA Intergenic (TACA)n|Simple_repeat|Simple_repeat -274934 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 425-175 chr22 47858058 47858223 + 3 NA Intergenic L1PA6|LINE|L1 226466 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 547-7 chr1 166049000 166049285 + 3 NA Intergenic L2a|LINE|L2 105656 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 626-7 chr1 114950015 114950289 + 3 NA intron (NM_001282541, intron 27 of 31) MLT1I|LTR|ERVL-MaLR -79672 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 567-173 chr7 155177598 155177962 + 3 NA Intergenic L1ME3A|LINE|L1 -106223 NR_038945 100128264 Hs.248137 NR_038945 ENSG00000220575 HTR5A-AS1 HTR5AOS HTR5A antisense RNA 1 ncRNA 487-150 chr2 124687886 124688157 + 3 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 662734 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 647-14 chr11 19481681 19482055 + 3 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 25361 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 639-41 chr14 82286609 82286963 + 3 NA Intergenic Intergenic -355846 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 333-216 chr19 56255685 56255858 + 3 NA intron (NM_001322061, intron 2 of 6) intron (NM_001322061, intron 2 of 6) -16977 NM_001354658 100506374 Hs.631532 NM_001354658 ENSG00000267710 EDDM13 - epididymal protein 13 protein-coding 250-392 chr7 25274619 25274708 + 3 NA Intergenic Intergenic -46177 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 689-63 chr3 89640411 89640778 + 3 NA Intergenic L1MA3|LINE|L1 532973 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 352-385 chr4 116318861 116319020 + 3 NA Intergenic Intergenic 19215 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 347-367 chr5 3271743 3271987 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 94030 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 382-12 chr1 112198034 112198203 + 3 NA Intergenic Intergenic -198096 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 481-11 chr1 189826590 189826779 + 3 NA Intergenic L1PA12|LINE|L1 649326 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 250-258 chr21 38232666 38232817 + 3 NA intron (NM_001276438, intron 1 of 2) L1MB8|LINE|L1 2815 NM_001276438 3772 Hs.411299 NM_002243 ENSG00000157551 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium voltage-gated channel subfamily J member 15 protein-coding 570-128 chr21 30929435 30929830 + 3 NA Intergenic Intergenic -48052 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 989-6 chr15 67351993 67352513 + 3 NA intron (NM_001031715, intron 6 of 20) L1MEd|LINE|L1 -97055 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 453-225 chr6 61907600 61907832 + 3 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 333586 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 533-147 chr4 12980514 12980829 + 3 NA Intergenic L2a|LINE|L2 503669 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 547-141 chr3 100889503 100889790 + 3 NA intron (NM_001349332, intron 4 of 35) intron (NM_001349332, intron 4 of 35) 103844 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 423-34 chr10 96616259 96616429 + 3 NA intron (NM_152309, intron 13 of 16) intron (NM_152309, intron 13 of 16) -29332 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 487-21 chr1 175334312 175334519 + 3 NA intron (NM_003285, intron 20 of 22) LTR8B|LTR|ERV1 -141428 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 419-273 chr7 52944987 52945205 + 3 NA Intergenic Intergenic -90537 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 509-216 chr6 56233471 56233734 + 3 NA intron (NM_001318751, intron 1 of 30) intron (NM_001318751, intron 1 of 30) 13978 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 828-43 chr6 61767640 61768033 + 3 NA intron (NR_146874, intron 6 of 13) L1M1|LINE|L1 193706 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 379-378 chr9 80980858 80981186 + 3 NA Intergenic L1MEg|LINE|L1 708513 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 386-88 chr14 39573159 39573358 + 3 NA Intergenic L1MA4|LINE|L1 -140758 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 628-115 chr6 126725164 126725568 + 3 NA Intergenic Intergenic 240735 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 499-92 chr17 71400594 71400874 + 3 NA Intergenic Intergenic -198555 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 705-32 chr15 54444072 54444463 + 3 NA intron (NM_001329919, intron 18 of 31) L1MA4A|LINE|L1 431619 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 475-194 chr4 16438098 16438317 + 3 NA Intergenic LTR26|LTR|ERV1 211544 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 1113-3 chr2 146300169 146300836 + 3 NA Intergenic L1PB1|LINE|L1 -286555 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 472-217 chr3 176949343 176949553 + 3 NA Intergenic Intergenic -132447 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 671-58 chr3 17382836 17383125 + 3 NA intron (NM_014744, intron 9 of 21) intron (NM_014744, intron 9 of 21) 317040 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 431-96 chr16 13700009 13700183 + 3 NA Intergenic Intergenic -220061 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 825-18 chr2 73313925 73314373 + 3 NA Intergenic Intergenic -20601 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 363-237 chr2 175543795 175544005 + 3 NA Intergenic L1MB7|LINE|L1 -362190 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 707-12 chr10 39281934 39282307 + 3 NA Intergenic ALR/Alpha|Satellite|centr 585524 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 566-153 chr5 37018536 37018726 + 3 NA intron (NM_015384, intron 24 of 45) intron (NM_015384, intron 24 of 45) 141862 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 552-144 chr3 122152092 122152294 + 3 NA Intergenic L1MB7|LINE|L1 -31475 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 701-103 chr9 69862039 69862464 + 3 NA intron (NM_001308084, intron 4 of 4) intron (NM_001308084, intron 4 of 4) 41434 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 358-277 chr22 16835542 16835698 + 3 NA Intergenic Intergenic 8146 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 635-9 chr1 179487336 179487676 + 3 NA intron (NR_073544, intron 17 of 25) Charlie7|DNA|hAT-Charlie 88442 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 410-235 chr5 33005100 33005317 + 3 NA Intergenic Intergenic 57765 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 370-103 chr11 122397724 122397895 + 3 NA intron (NR_137179, intron 1 of 4) MER5C1|DNA|hAT-Charlie 25062 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 914-17 chr2 171486033 171486450 + 3 NA Intergenic Intergenic -35992 NM_001256909 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 449-152 chr21 21902174 21902361 + 3 NA Intergenic LTR12C|LTR|ERV1 155282 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 510-261 chr7 54416129 54416504 + 3 NA Intergenic L1MA9|LINE|L1 85619 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 452-98 chr16 10005639 10005883 + 3 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 176306 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 455-151 chr20 50628946 50629271 + 3 NA intron (NM_001290268, intron 2 of 21) L2b|LINE|L2 7810 NM_080829 140876 Hs.372578 NM_080829 ENSG00000042062 RIPOR3 C20orf175|C20orf176|FAM65C RIPOR family member 3 protein-coding 447-36 chr10 112832542 112832808 + 3 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 9179 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 463-130 chr2 16315556 16315750 + 3 NA Intergenic Intergenic 265226 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 564 chr1 7047159 7047489 + 3 NA intron (NM_001349608, intron 2 of 21) L2c|LINE|L2 261870 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 663-77 chr4 94521185 94521595 + 3 NA intron (NM_001256428, intron 2 of 11) intron (NM_001256428, intron 2 of 11) 69448 NM_001256428 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 477-168 chr2 158713001 158713210 + 3 NA intron (NR_135242, intron 1 of 3) L1MD1|LINE|L1 21897 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 503-52 chr11 50466942 50467277 + 3 NA Intergenic ALR/Alpha|Satellite|centr 57962 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 518-257 chr6 69921096 69921429 + 3 NA intron (NM_001858, intron 4 of 50) (AT)n|Simple_repeat|Simple_repeat 54706 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 636-65 chr19 28816476 28816784 + 3 NA Intergenic Intergenic -88936 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 392-249 chr5 35301595 35301749 + 3 NA Intergenic L1ME2|LINE|L1 -71185 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 365-25 chr1 179751406 179751677 + 3 NA intron (NM_001329719, intron 1 of 4) L2b|LINE|L2 8250 NM_173509 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 755-44 chr4 60657796 60658129 + 3 NA Intergenic Intergenic -264657 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 503-97 chr14 62735330 62735567 + 3 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 310010 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 749-73 chr4 128915065 128915511 + 3 NA intron (NM_144643, intron 18 of 20) intron (NM_144643, intron 18 of 20) 103444 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 810-4 chr10 100105803 100106229 + 3 NA Intergenic L1M5|LINE|L1 -24147 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 293-344 chr5 98047701 98047891 + 3 NA Intergenic Intergenic 113443 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 580-81 chr2 68902109 68902520 + 3 NA Intergenic L1MA4|LINE|L1 -30917 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 477-233 chr5 45366631 45366854 + 3 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 329638 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 351-372 chr5 24681902 24682046 + 3 NA Intergenic L1MEb|LINE|L1 -36996 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 121-16 chr17 57662496 57662574 + 3 NA intron (NM_138962, intron 11 of 13) MIR|SINE|MIR -54123 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 590-174 chr8 127643919 127644300 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 89858 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 899-32 chr8 78016985 78017424 + 3 NA Intergenic L1MB7|LINE|L1 -499136 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 404-74 chr12 19469900 19470160 + 3 NA intron (NM_001114176, intron 2 of 8) intron (NM_001114176, intron 2 of 8) 29431 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 607-109 chr4 116012661 116013034 + 3 NA Intergenic L1MA9|LINE|L1 -286878 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 910-34 chr5 136017503 136018191 + 3 NA Intergenic Intergenic -11141 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 539-63 chr14 22360229 22360418 + 3 NA Intergenic L1P4a|LINE|L1 72430 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 490-56 chr11 70692478 70692729 + 3 NA intron (NM_012309, intron 14 of 24) L1ME4b|LINE|L1 -30762 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 527-146 chr2 192685785 192686054 + 3 NA Intergenic Intergenic -63926 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 555-136 chr4 33681986 33682251 + 3 NA Intergenic Intergenic 357775 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 770-69 chr7 31697541 31697983 + 3 NA intron (NM_001145123, intron 3 of 3) MIR|SINE|MIR 10547 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 771-11 chr10 112220019 112220489 + 3 NA Intergenic LTR8A|LTR|ERV1 -36489 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 450-67 chr12 102725663 102725904 + 3 NA Intergenic Intergenic 98616 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 667-112 chr8 78285678 78286034 + 3 NA Intergenic MER77B|LTR|ERVL -230484 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 391-370 chr8 136407600 136407808 + 3 NA Intergenic (TATATT)n|Simple_repeat|Simple_repeat -123094 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 466-6 chr1 98514986 98515232 + 3 NA Intergenic L2a|LINE|L2 -146612 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 746-14 chr10 85943286 85943732 + 3 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 321279 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 491-150 chr21 16700416 16700689 + 3 NA Intergenic L1ME1|LINE|L1 110315 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 443-136 chr19 23229497 23229709 + 3 NA intron (NM_001355404, intron 3 of 3) L1M3a|LINE|L1 20791 NM_001355404 440519 Hs.675814 NM_001355404 ENSG00000196081 ZNF724 ZNF724P zinc finger protein 724 protein-coding 672-98 chr7 13937411 13937780 + 3 NA intron (NM_001370555, intron 6 of 12) intron (NM_001370555, intron 6 of 12) 48919 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 979-23 chr9 22794749 22795336 + 3 NA intron (NR_038977, intron 4 of 5) intron (NR_038977, intron 4 of 5) 148842 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 388-77 chr12 40881414 40881570 + 3 NA intron (NM_001256064, intron 1 of 15) MER119|DNA|hAT-Charlie -26865 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 635-65 chr3 28540356 28540797 + 3 NA Intergenic MER11A|LTR|ERVK -34702 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 1400 chr1 75827838 75828576 + 3 NA intron (NM_002440, intron 7 of 19) L1PA17|LINE|L1 31325 NM_002440 4438 Hs.216639 NM_002440 ENSG00000057468 MSH4 - mutS homolog 4 protein-coding 503-149 chr2 76140835 76141102 + 3 NA Intergenic L1MEg|LINE|L1 -430053 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 458-75 chr14 62710644 62710814 + 3 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 334729 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 924-29 chr21 30947686 30948073 + 3 NA Intergenic Intergenic -66299 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 576-83 chr2 67367439 67367677 + 3 NA Intergenic L1ME1|LINE|L1 -29775 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 770-29 chr17 67658009 67658512 + 3 NA intron (NM_181671, intron 6 of 9) LTR28C|LTR|ERV1 -59573 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 548-229 chr8 69305201 69305570 + 3 NA Intergenic Intergenic 142859 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 638-35 chr13 93051850 93052188 + 3 NA intron (NR_126360, intron 2 of 3) L1MC1|LINE|L1 6678 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 741-35 chr20 59434910 59435330 + 3 NA Intergenic Intergenic 134509 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 320-322 chr21 28698279 28698456 + 3 NA Intergenic MIR|SINE|MIR 159049 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 762-41 chr20 58173053 58173488 + 3 NA Intergenic MER102b|DNA|hAT-Charlie 22368 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 424-255 chr7 28228711 28228923 + 3 NA intron (NR_034097, intron 3 of 3) intron (NR_034097, intron 3 of 3) -48022 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 446-107 chr15 39342770 39342987 + 3 NA Intergenic L2c|LINE|L2 92209 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 669-21 chr13 55835317 55835663 + 3 NA Intergenic L1MB7|LINE|L1 661036 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 586-47 chr14 23451863 23452288 + 3 NA Intergenic L1MB7|LINE|L1 -16415 NM_000257 4625 Hs.719946 NM_000257 ENSG00000092054 MYH7 CMD1S|CMH1|MPD1|MYHCB|SPMD|SPMM myosin heavy chain 7 protein-coding 850-16 chr16 86600871 86601433 + 3 NA Intergenic MER58B|DNA|hAT-Charlie 22643 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 500-132 chr2 80175014 80175187 + 3 NA intron (NM_001282598, intron 7 of 17) L2b|LINE|L2 129652 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 338-464 chr6 22713449 22713652 + 3 NA intron (NR_134614, intron 1 of 2) intron (NR_134614, intron 1 of 2) 4374 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 343-274 chr2 145378967 145379188 + 3 NA Intergenic Intergenic 711110 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 485-80 chr14 72127419 72127620 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 193992 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 393-357 chr8 89117452 89117643 + 3 NA Intergenic L1MA9|LINE|L1 640164 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 443-179 chr20 42962328 42962626 + 3 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -6266 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 342-549 chr9 32208805 32208956 + 3 NA Intergenic MIR|SINE|MIR -175723 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 699-10 chr10 104372810 104373307 + 3 NA intron (NM_001008723, intron 7 of 17) L1ME3G|LINE|L1 19225 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 398-30 chr10 10473402 10473595 + 3 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 10948 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 747-24 chr15 48045002 48045421 + 3 NA Intergenic Intergenic -75779 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 483-149 chr21 23275451 23275648 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 109286 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 687-75 chr3 64843202 64843515 + 3 NA intron (NR_038264, intron 3 of 5) intron (NR_038264, intron 3 of 5) -155358 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 540-37 chr11 56016104 56016306 + 3 NA Intergenic Intergenic -14214 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 257-351 chr6 62349539 62349639 + 3 NA Intergenic Intergenic -63362 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 702-71 chr4 73598102 73598473 + 3 NA intron (NM_001270392, intron 2 of 9) L1ME4b|LINE|L1 22149 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 439-207 chr4 66093668 66093857 + 3 NA Intergenic Intergenic -183062 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 402-287 chr5 143075144 143075368 + 3 NA intron (NR_146198, intron 17 of 22) intron (NR_146198, intron 17 of 22) -117244 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 444-188 chr5 14048435 14048691 + 3 NA Intergenic Intergenic -94779 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 490-188 chr3 173808869 173809091 + 3 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 111816 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 356-359 chr4 48033575 48033756 + 3 NA intron (NM_207330, intron 4 of 5) intron (NM_207330, intron 4 of 5) 16893 NM_207330 152519 Hs.134190 NM_207330 ENSG00000163293 NIPAL1 NPAL1 NIPA like domain containing 1 protein-coding 543-47 chr11 11666549 11666749 + 3 NA Intergenic Charlie26a|DNA|hAT-Charlie -9927 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 707-110 chr8 139061463 139061817 + 3 NA Intergenic Intergenic -147599 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 555-115 chr21 19955224 19955431 + 3 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -55572 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 776-14 chr12 133032978 133033349 + 3 NA non-coding (NR_110091, exon 3 of 3) non-coding (NR_110091, exon 3 of 3) 4059 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 523-227 chr5 129654789 129654993 + 3 NA intron (NM_133638, intron 14 of 22) intron (NM_133638, intron 14 of 22) -93203 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 543-100 chr17 70551942 70552213 + 3 NA Intergenic Intergenic 382542 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 410-100 chr16 31556012 31556187 + 3 NA Intergenic L1MEg|LINE|L1 -2532 NR_146571 105371173 NR_146571 LINC02190 - long intergenic non-protein coding RNA 2190 ncRNA 518-13 chr1 210794734 210795041 + 3 NA intron (NM_002238, intron 9 of 10) intron (NM_002238, intron 9 of 10) 338487 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 541-100 chr19 7125609 7125851 + 3 NA intron (NM_001079817, intron 15 of 20) intron (NM_001079817, intron 15 of 20) 56027 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 574-16 chr10 115816695 115817020 + 3 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 377932 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 507-84 chr14 63246581 63246837 + 3 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 42266 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 467-248 chr6 63927720 63927924 + 3 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 120986 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 518-175 chr3 47996218 47996600 + 3 NA intron (NM_002375, intron 2 of 18) intron (NM_002375, intron 2 of 18) 92439 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 484-287 chr9 100194233 100194443 + 3 NA intron (NR_134606, intron 3 of 16) L1ME1|LINE|L1 95095 NM_014425 27130 Hs.558477 NM_014425 ENSG00000119509 INVS INV|NPH2|NPHP2 inversin protein-coding 536-162 chr3 74479275 74479608 + 3 NA intron (NM_020872, intron 3 of 21) HAL1|LINE|L1 41699 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 861-22 chr4 7600317 7600642 + 3 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) 140451 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 475-157 chr2 217721417 217721720 + 3 NA intron (NR_026597, intron 1 of 12) L1ME1|LINE|L1 35025 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 383-401 chr8 133759176 133759390 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 18069 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 339-585 chr8 116087002 116087221 + 3 NA intron (NR_046215, intron 7 of 13) MIR|SINE|MIR 237948 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 589-119 chr5 46056491 46056697 + 3 NA Intergenic ALR/Alpha|Satellite|centr -360214 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 471-127 chr2 11255359 11255581 + 3 NA intron (NM_001321643, intron 3 of 32) L1M4a1|LINE|L1 89166 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 826-38 chr20 60812310 60812719 + 3 NA Intergenic L1ME4a|LINE|L1 247952 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 483-67 chr14 67006292 67006589 + 3 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -183000 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 610-13 chr1 238880508 238880821 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -394647 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 477-91 chr14 66171450 66171714 + 3 NA Intergenic Intergenic -314789 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 484-65 chr14 71794614 71794925 + 3 NA Intergenic L1MB8|LINE|L1 -137402 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 869-15 chr12 24516513 24516966 + 3 NA intron (NM_152989, intron 1 of 17) L3|LINE|CR1 45752 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 873-19 chr21 30073511 30074080 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 93010 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 919-25 chr8 131569475 131569816 + 3 NA Intergenic L1PB1|LINE|L1 -334448 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 359-254 chr2 172574403 172574644 + 3 NA intron (NM_002610, intron 8 of 10) L1MB7|LINE|L1 18433 NM_002610 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 696-88 chr5 178566941 178567281 + 3 NA intron (NM_173465, intron 1 of 28) L1MC4a|LINE|L1 23282 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 246-305 chr4 141706208 141706343 + 3 NA intron (NM_172175, intron 3 of 9) L1MA6|LINE|L1 69692 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 467-8 chr1 68596286 68596516 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -99319 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 377-329 chr5 104631380 104631548 + 3 NA Intergenic Intergenic -468010 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 837-4 chr10 123368286 123368829 + 3 NA Intergenic Intergenic 214155 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 755-32 chr2 6671614 6672082 + 3 NA Intergenic Intergenic -21329 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 559-87 chr2 9747850 9748079 + 3 NA Intergenic AluJr|SINE|Alu -95478 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 415-11 chr1 99632642 99632896 + 3 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -13344 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 398-46 chr10 105234180 105234346 + 3 NA intron (NM_014978, intron 20 of 26) L1MCa|LINE|L1 -568047 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 205-128 chr19 28278238 28278322 + 3 NA Intergenic Intergenic -328408 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 508-225 chr7 106342099 106342368 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -57250 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 631-95 chr4 132517912 132518371 + 3 NA Intergenic Intergenic -72948 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 479-51 chr13 96829901 96830292 + 3 NA intron (NM_153456, intron 1 of 1) MER47A|DNA|TcMar-Tigger 154076 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 140-52 chr4 38256863 38256924 + 3 NA Intergenic L1ME1|LINE|L1 -110021 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 477-136 chr2 5905779 5906003 + 3 NA Intergenic L2c|LINE|L2 -26796 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 511-253 chr8 35846741 35847061 + 3 NA Intergenic L1MA8|LINE|L1 -136581 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 367-90 chr12 52604544 52604750 + 3 NA Intergenic Intergenic -3184 NM_001146225 140807 Hs.662013 NM_080747 ENSG00000170486 KRT72 K6IRS2|K6irs|KRT6|KRT6IRS2 keratin 72 protein-coding 1114-5 chr6 75894770 75895275 + 3 NA intron (NM_001368865, intron 29 of 35) intron (NM_001368865, intron 29 of 35) 145783 NM_004999 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 423-270 chr7 67733062 67733376 + 3 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -287034 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 258-290 chr4 63441784 63441955 + 3 NA Intergenic Intergenic 967581 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 268-196 chr2 73460043 73460229 + 3 NA TTS (NR_046762) TTS (NR_046762) 3033 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 621-43 chr16 72423279 72423726 + 3 NA TTS (NR_159371) TTS (NR_159371) 241468 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 494-147 chr2 229037763 229037967 + 3 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 194227 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 528-39 chr10 86590454 86590759 + 3 NA Intergenic Intergenic -63941 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 588-69 chr2 68939342 68939652 + 3 NA Intergenic L1PA16|LINE|L1 13396 NM_182536 200504 Hs.16757 NM_182536 ENSG00000183607 GKN2 BRICD1B|GDDR|PRO813|TFIZ1|VLTI465 gastrokine 2 protein-coding 1734 chr11 84113123 84114049 + 3 NA intron (NM_001142699, intron 9 of 27) Charlie1a|DNA|hAT-Charlie 159694 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 418-314 chrX 125227183 125227329 + 3 NA Intergenic Intergenic -92615 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 385-72 chr12 108023616 108023781 + 3 NA Intergenic MIRb|SINE|MIR -105590 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 539-212 chr8 138134732 138135036 + 3 NA intron (NM_015912, intron 19 of 19) intron (NM_015912, intron 19 of 19) -51339 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 397-75 chr13 89574031 89574291 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -9748 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 319-36 chr1 220034878 220035076 + 3 NA exon (NM_004446, exon 3 of 32) exon (NM_004446, exon 3 of 32) 11528 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 509-265 chr8 136159942 136160198 + 3 NA Intergenic Intergenic -370728 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 272-284 chr3 176368078 176368260 + 3 NA Intergenic L1ME3|LINE|L1 123618 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 951-24 chr5 44979044 44979592 + 3 NA Intergenic L1PA16|LINE|L1 170371 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 633-66 chr2 119632892 119633275 + 3 NA intron (NR_073132, intron 20 of 24) L1MB1|LINE|L1 -46084 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 397-122 chr18 9518261 9518468 + 3 NA intron (NM_006788, intron 3 of 9) intron (NM_006788, intron 3 of 9) 42851 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 555-138 chr4 39881282 39881610 + 3 NA intron (NM_001100399, intron 17 of 32) intron (NM_001100399, intron 17 of 32) 96465 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 589-144 chr6 159908570 159908825 + 3 NA 3' UTR (NM_002377, exon 3 of 3) 3' UTR (NM_002377, exon 3 of 3) 17709 NM_002377 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 760-7 chr10 14124572 14125094 + 3 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 50549 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 420-144 chr2 103715033 103715250 + 3 NA Intergenic L1MA4A|LINE|L1 693191 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 832-5 chr11 29107743 29108117 + 3 NA Intergenic LTR81C|LTR|Gypsy -486483 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 475-171 chr22 47468858 47469141 + 3 NA intron (NR_109967, intron 1 of 2) intron (NR_109967, intron 1 of 2) 18112 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 443-216 chr4 34477242 34477527 + 3 NA Intergenic Intergenic -207637 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 407-138 chr2 52597090 52597306 + 3 NA Intergenic Intergenic 105417 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 190-39 chr12 60816627 60816751 + 3 NA Intergenic Intergenic 1127319 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 644-22 chr14 78514676 78515015 + 3 NA intron (NM_004796, intron 1 of 16) L2a|LINE|L2 111126 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 445-194 chr4 38544155 38544401 + 3 NA Intergenic Intergenic -19725 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 585-89 chr20 50098437 50098832 + 3 NA intron (NM_199203, intron 5 of 7) L2a|LINE|L2 14516 NM_001257395 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 230-145 chr17 10972514 10972648 + 3 NA Intergenic Intergenic -134494 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 580-46 chr14 53266107 53266426 + 3 NA Intergenic MIRb|SINE|MIR 112912 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 550-44 chr11 41165196 41165482 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 294297 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 468-242 chr5 34543877 34544043 + 3 NA Intergenic AluJb|SINE|Alu -112368 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 524-249 chr8 28272565 28272771 + 3 NA Intergenic MIRb|SINE|MIR -44600 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 544-4 chr1 37199422 37199673 + 3 NA Intergenic L1MA9|LINE|L1 37984 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 497-193 chr4 16921776 16921999 + 3 NA Intergenic L1MC5|LINE|L1 -23078 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 717-68 chr5 58674549 58674916 + 3 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 91657 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 588-60 chr18 74323337 74323591 + 3 NA intron (NM_001174123, intron 4 of 13) intron (NM_001174123, intron 4 of 13) 7625 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 310-275 chr2 183907754 183907989 + 3 NA Intergenic L1MD1|LINE|L1 -471104 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 255-245 chr22 27971592 27971790 + 3 NA intron (NR_026963, intron 2 of 4) intron (NR_026963, intron 2 of 4) -51079 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 982-2 chr1 234645394 234645867 + 3 NA promoter-TSS (NR_125944) promoter-TSS (NR_125944) -659 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 584-85 chr20 16717237 16717462 + 3 NA Intergenic Intergenic -12677 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 325-135 chr12 88209788 88209948 + 3 NA Intergenic L1M2|LINE|L1 67561 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 426-39 chr11 22978393 22978573 + 3 NA Intergenic MIR|SINE|MIR -118009 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 394-247 chr4 116961419 116961572 + 3 NA Intergenic Intergenic 124081 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 540-90 chr16 54762775 54763101 + 3 NA Intergenic Intergenic 85295 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 448-140 chr20 61044762 61045033 + 3 NA Intergenic Intergenic -34167 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 363-25 chr1 194590255 194590458 + 3 NA Intergenic L1MEf|LINE|L1 1285611 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 707-61 chr20 12297025 12297549 + 3 NA Intergenic L1M2|LINE|L1 379394 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 487-283 chr8 63621014 63621294 + 3 NA Intergenic Intergenic -148276 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 702-102 chr8 92311158 92311535 + 3 NA Intergenic L1PA6|LINE|L1 -207961 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 355-408 chr5 109089907 109090120 + 3 NA intron (NR_146155, intron 16 of 19) intron (NR_146155, intron 16 of 19) 165407 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 1002-22 chr7 61770659 61771222 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1533116 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 541-47 chr12 52759466 52759757 + 3 NA Intergenic Intergenic 17734 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 639-118 chr8 122144284 122144551 + 3 NA Intergenic Intergenic 424227 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 334-91 chr11 82715946 82716100 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 17841 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 248-47 chr10 90629555 90629647 + 3 NA Intergenic L1ME2|LINE|L1 -88796 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 390-307 chr5 145347963 145348232 + 3 NA Intergenic Intergenic 487245 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 319-420 chr5 93406646 93406820 + 3 NA Intergenic Intergenic 164610 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 310-77 chr11 39096308 39096451 + 3 NA Intergenic L1MB2|LINE|L1 447521 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 498-22 chr10 20960793 20961028 + 3 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -63308 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 564-103 chr2 105958868 105959151 + 3 NA Intergenic AluJo|SINE|Alu -106679 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 444-14 chr1 173057522 173057771 + 3 NA Intergenic Intergenic -6683 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 492-29 chr10 99008108 99008334 + 3 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -83653 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 429-30 chr10 9895724 9895934 + 3 NA Intergenic Intergenic -162893 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 503-81 chr12 115517867 115518116 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 630663 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 631-93 chr4 72501351 72501688 + 3 NA intron (NM_014243, intron 3 of 21) L1PA15-16|LINE|L1 67702 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 863-48 chr8 64908260 64908576 + 3 NA Intergenic Intergenic -109681 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 431-232 chr5 125951215 125951407 + 3 NA Intergenic L1MC4a|LINE|L1 -228266 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 465-168 chr3 1050345 1050615 + 3 NA Intergenic Intergenic -42544 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 549-102 chr2 22615265 22615587 + 3 NA Intergenic Intergenic 78947 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 742-78 chr8 100408109 100408491 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 25537 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 572-51 chr13 88849355 88849675 + 3 NA Intergenic Intergenic 222662 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 511-6 chr1 115971884 115972188 + 3 NA intron (NR_125970, intron 1 of 4) L1MEi|LINE|L1 -4477 NM_018420 55356 Hs.125482 NM_018420 ENSG00000163393 SLC22A15 FLIPT1|PRO34686 solute carrier family 22 member 15 protein-coding 307-266 chr2 226931040 226931160 + 3 NA intron (NM_001349069, intron 8 of 8) L1PB3|LINE|L1 95046 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 388-200 chr21 25377592 25377765 + 3 NA Intergenic L1M3f|LINE|L1 54023 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 370-191 chr18 10361585 10361780 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 52688 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 414-63 chr12 26760138 26760301 + 3 NA intron (NM_002223, intron 2 of 56) MER2B|DNA|TcMar-Tigger 72975 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 453-204 chr5 40593494 40593770 + 3 NA Intergenic Intergenic -86283 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 700-89 chr6 67214989 67215395 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -840159 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 758-18 chr11 121768562 121768991 + 3 NA Intergenic MLT2A2|LTR|ERVL 316462 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 678-40 chr17 69903820 69904169 + 3 NA TTS (NR_109971) TTS (NR_109971) -57713 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 314-131 chr12 62292880 62292999 + 3 NA intron (NR_147080, intron 1 of 19) L1PA15-16|LINE|L1 32535 NR_147082 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 820-24 chr19 39617133 39617464 + 3 NA Intergenic L1PB1|LINE|L1 14774 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 282-270 chr21 23220611 23220798 + 3 NA Intergenic L1MEc|LINE|L1 141420 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 862-13 chr14 59528261 59528661 + 3 NA intron (NM_001164399, intron 14 of 19) HAL1|LINE|L1 43944 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 319-126 chr13 55861963 55862136 + 3 NA Intergenic MER52-int|LTR|ERV1 687595 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 430-253 chr5 131242001 131242189 + 3 NA Intergenic Intergenic -21914 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 628-43 chr14 62817607 62818082 + 3 NA intron (NM_139318, intron 8 of 10) (AT)n|Simple_repeat|Simple_repeat 227614 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 224-168 chr2 227004980 227005090 + 3 NA 3' UTR (NM_000092, exon 48 of 48) 3' UTR (NM_000092, exon 48 of 48) 159524 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 428-80 chr15 96210603 96210791 + 3 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -82856 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 757-25 chr18 67837611 67838081 + 3 NA intron (NR_033921, intron 3 of 4) L1MA2|LINE|L1 -23024 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 501-175 chr3 134081985 134082286 + 3 NA Intergenic L1MC5a|LINE|L1 -24487 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 519-66 chr15 53493322 53493512 + 3 NA Intergenic MER33|DNA|hAT-Charlie 47435 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 476-226 chr5 101513449 101513647 + 3 NA Intergenic Intergenic -610266 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 663-109 chr7 62678008 62678379 + 3 NA Intergenic ALR/Alpha|Satellite|centr 625863 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 429-284 chr7 131280506 131280678 + 3 NA intron (NM_001145354, intron 2 of 18) L1MB7|LINE|L1 47187 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 273-358 chr5 58179822 58179989 + 3 NA Intergenic Intergenic -57564 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 476-211 chr5 30447839 30448102 + 3 NA Intergenic L1MEh|LINE|L1 567410 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 249-52 chr10 64402878 64403019 + 3 NA Intergenic Intergenic -422580 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 715-91 chr9 28155679 28156086 + 3 NA intron (NM_152570, intron 5 of 6) MLT1A0|LTR|ERVL-MaLR 563423 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 503-185 chr22 43816751 43816962 + 3 NA Intergenic Intergenic -4551 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 595-133 chr5 86145974 86146369 + 3 NA Intergenic Intergenic -136273 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 417-305 chr9 77570972 77571139 + 3 NA intron (NM_004297, intron 1 of 6) MIRb|SINE|MIR 77267 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 396-237 chr3 181023839 181024114 + 3 NA Intergenic L1MB7|LINE|L1 -32704 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 309-309 chr20 54319048 54319177 + 3 NA Intergenic L1MEf|LINE|L1 111025 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 761-11 chr11 23439396 23439894 + 3 NA Intergenic Intergenic -20455 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 487-262 chr7 7231546 7231745 + 3 NA intron (NM_020156, intron 1 of 3) L1MEg|LINE|L1 -23509 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 268-255 chr3 160838673 160838860 + 3 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) -3383 NM_001317911 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 529-17 chr10 63815684 63815896 + 3 NA Intergenic L1PREC2|LINE|L1 -293900 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 390-426 chr9 107581750 107582016 + 3 NA Intergenic L1M5|LINE|L1 -92114 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 561-100 chr2 98425626 98425945 + 3 NA Intergenic L1M4b|LINE|L1 -18802 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 564-177 chr6 150833398 150833642 + 3 NA intron (NM_001329803, intron 13 of 13) intron (NM_001329803, intron 13 of 13) -32159 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 424-122 chr2 12472992 12473159 + 3 NA intron (NR_110196, intron 4 of 5) L1MEd|LINE|L1 -243797 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 611-128 chr6 14845469 14845850 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -400410 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 287-222 chr20 11492405 11492535 + 3 NA Intergenic Intergenic -219087 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 654-16 chr10 43819382 43819723 + 3 NA Intergenic Intergenic -25754 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 534-271 chr9 1059224 1059415 + 3 NA Intergenic Intergenic 7832 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 609-11 chr10 64682780 64683226 + 3 NA Intergenic X8_LINE|LINE|CR1 -142525 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 912-29 chr22 33374017 33374620 + 3 NA intron (NM_133642, intron 9 of 14) MER101-int|LTR|ERV1 62351 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 554-147 chr3 111133178 111133423 + 3 NA intron (NM_001243288, intron 5 of 8) intron (NM_001243288, intron 5 of 8) 61484 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 784-55 chr6 66898301 66898662 + 3 NA Intergenic Intergenic 1110602 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 744-17 chr12 14018016 14018419 + 3 NA Intergenic L1ME1|LINE|L1 -37861 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 596-157 chr7 110234717 110235086 + 3 NA Intergenic Intergenic -274688 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 433-69 chr13 28831183 28831379 + 3 NA intron (NM_001366651, intron 1 of 14) L1MB7|LINE|L1 10942 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 438-92 chr17 53914205 53914438 + 3 NA Intergenic Intergenic 91394 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 866-50 chr7 113228465 113229028 + 3 NA Intergenic L1ME3A|LINE|L1 -110164 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 505-264 chr6 40459873 40460168 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 81683 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 364-60 chr10 49554480 49554678 + 3 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -15041 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 482-252 chr7 64033932 64034258 + 3 NA Intergenic Intergenic -3993 NR_039987 100506050 Hs.405628 NR_039987 ENSG00000228564 LINC01005 - long intergenic non-protein coding RNA 1005 ncRNA 742-28 chr15 49755192 49755512 + 3 NA Intergenic Intergenic 134304 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 449-204 chr5 12586553 12586747 + 3 NA intron (NR_033383, intron 1 of 3) intron (NR_033383, intron 1 of 3) 11793 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 686-25 chr15 27733241 27733638 + 3 NA Intergenic Intergenic 365876 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 901-38 chr8 114572592 114573205 + 3 NA Intergenic MER50|LTR|ERV1 1095115 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 705-102 chr8 83333219 83333709 + 3 NA Intergenic Intergenic -70294 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 662-12 chr10 66082425 66082768 + 3 NA intron (NM_001127384, intron 14 of 17) L1MC4a|LINE|L1 511171 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 709-41 chr2 110953957 110954510 + 3 NA intron (NM_001142807, intron 12 of 17) L1MEd|LINE|L1 161355 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 469-261 chr7 34009605 34009909 + 3 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 104218 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 1439-6 chr6 60702973 60703679 + 3 NA Intergenic MIRb|SINE|MIR -870804 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 518-85 chr14 80433622 80433969 + 3 NA intron (NR_038355, intron 8 of 8) intron (NR_038355, intron 8 of 8) -202738 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 321-370 chr3 60790570 60790804 + 3 NA intron (NR_148921, intron 4 of 4) L1MC2|LINE|L1 -172817 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 351-83 chr12 4225745 4225961 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -47909 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 338-10 chr1 62626084 62626265 + 3 NA intron (NM_001367561, intron 11 of 49) L1MB7|LINE|L1 28654 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 673-75 chr3 54483556 54483958 + 3 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 156100 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 485-232 chr5 110218886 110219075 + 3 NA Intergenic L1PA8A|LINE|L1 294935 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 797-54 chr7 97256969 97257285 + 3 NA Intergenic Intergenic 140534 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 542-232 chr8 138204578 138204965 + 3 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -121226 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 574-93 chr20 9138328 9138746 + 3 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 69483 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 372-344 chr3 185267383 185267541 + 3 NA Intergenic Intergenic -13413 NM_001966 1962 Hs.429879 NM_001966 ENSG00000113790 EHHADH ECHD|FRTS3|L-PBE|LBFP|LBP|PBFE enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase protein-coding 411-94 chr14 84135088 84135326 + 3 NA Intergenic Intergenic -1136725 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 499-147 chr20 43299979 43300216 + 3 NA Intergenic Intergenic -110191 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 902-10 chr13 26650822 26651315 + 3 NA intron (NM_006646, intron 3 of 9) L1MCa|LINE|L1 93365 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 833-29 chr4 96452081 96452471 + 3 NA intron (NR_147149, intron 2 of 3) L1PA14|LINE|L1 141573 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 470-196 chr4 66795124 66795438 + 3 NA Intergenic Intergenic 518457 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 840-20 chr17 26603393 26603988 + 3 NA Intergenic ALR/Alpha|Satellite|centr 485551 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 202-98 chr17 76623539 76623656 + 3 NA Intergenic L1MC4a|LINE|L1 20160 NR_110309 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 433-98 chr15 81476570 81476917 + 3 NA Intergenic Intergenic -102530 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 597-113 chr6 40014712 40014961 + 3 NA Intergenic L1MA4|LINE|L1 -80374 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 360-203 chr2 15239688 15239835 + 3 NA intron (NR_052013, intron 44 of 50) intron (NR_052013, intron 44 of 50) 321573 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 484-263 chr8 82502027 82502241 + 3 NA Intergenic Intergenic -409970 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 515-5 chr1 67262501 67262693 + 3 NA Intergenic Intergenic -44767 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 685-65 chr3 98868110 98868452 + 3 NA intron (NM_080927, intron 2 of 15) L1MC4a|LINE|L1 33414 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 525-146 chr21 28704047 28704259 + 3 NA Intergenic Intergenic 164835 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 609-15 chr11 38848217 38848479 + 3 NA Intergenic L1P4|LINE|L1 199490 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 171-33 chr14 73611085 73611171 + 3 NA intron (NM_001365789, intron 1 of 3) MER70A|LTR|ERVL 183 NM_001365789 641372 Hs.122038 NM_001037162 ENSG00000205669 ACOT6 C14orf42|c14_5530 acyl-CoA thioesterase 6 protein-coding 448-58 chr12 26189378 26189609 + 3 NA Intergenic L2|LINE|L2 -5843 NM_001135823 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 656-96 chr5 60793828 60794173 + 3 NA intron (NM_001104558, intron 1 of 7) intron (NM_001104558, intron 1 of 7) 50269 NM_001297617 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 292-296 chr3 173770146 173770271 + 3 NA intron (NM_001365928, intron 3 of 6) L2c|LINE|L2 150588 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 1550-2 chr12 34486389 34487129 + 3 NA Intergenic ALR/Alpha|Satellite|centr 464263 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 817-36 chr3 83997997 83998336 + 3 NA Intergenic Intergenic 871409 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 507-255 chr8 122236531 122236851 + 3 NA Intergenic Intergenic 331953 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 598-117 chr5 180158746 180158957 + 3 NA intron (NM_175062, intron 1 of 13) HAL1|LINE|L1 50360 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 466-59 chr12 23030077 23030319 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X -145438 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 522-19 chr10 43476847 43477042 + 3 NA intron (NM_001355444, intron 3 of 3) L2|LINE|L2 39833 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 354-78 chr11 39626829 39626978 + 3 NA Intergenic Intergenic 666227 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 228-381 chrX 28601450 28601547 + 3 NA intron (NM_014271, intron 1 of 10) intron (NM_014271, intron 1 of 10) 14052 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 477-258 chr7 45322818 45323059 + 3 NA Intergenic L1MDa|LINE|L1 165147 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 566-85 chr2 38099501 38099885 + 3 NA Intergenic Intergenic -23512 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 519-211 chr7 64513215 64513570 + 3 NA Intergenic LTR25-int|LTR|ERV1 49679 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 635-10 chr1 208870219 208870584 + 3 NA Intergenic L1MEc|LINE|L1 -102053 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 310-440 chr6 9362273 9362420 + 3 NA Intergenic Intergenic 710137 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 711-68 chr8 56127562 56128090 + 3 NA Intergenic L1MEc|LINE|L1 -13844 NM_005372 4342 Hs.533432 NM_005372 ENSG00000172680 MOS MSV MOS proto-oncogene, serine/threonine kinase protein-coding 474-60 chr12 22362915 22363237 + 3 NA Intergenic L1ME1|LINE|L1 -28362 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 514-279 chr8 5389187 5389373 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -394366 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 560-13 chr10 19122168 19122393 + 3 NA intron (NM_001142308, intron 5 of 39) L2a|LINE|L2 73479 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 857-50 chr7 35323344 35323829 + 3 NA intron (NR_038864, intron 1 of 2) intron (NR_038864, intron 1 of 2) 9731 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 622-136 chr8 18567892 18568293 + 3 NA intron (NM_015310, intron 14 of 15) MSTB|LTR|ERVL-MaLR 176810 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 464-164 chr3 88156693 88156923 + 3 NA 3' UTR (NM_173824, exon 3 of 3) 3' UTR (NM_173824, exon 3 of 3) 6849 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 544-18 chr1 210168894 210169181 + 3 NA 3' UTR (NM_001146264, exon 9 of 9) 3' UTR (NM_001146264, exon 9 of 9) -63759 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 760-23 chr17 59304993 59305285 + 3 NA Intergenic Intergenic -26516 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 928-18 chr2 193453774 193454360 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie 704222 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 381-214 chr2 163924121 163924320 + 3 NA Intergenic L1ME1|LINE|L1 -188212 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 469-223 chr5 114822862 114823127 + 3 NA Intergenic Intergenic -49581 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 646-41 chr16 8396355 8396682 + 3 NA Intergenic Intergenic 193320 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 579-172 chr8 117929629 117929960 + 3 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -8881 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 569-104 chr2 184276537 184276931 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -102241 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 269-97 chr12 103472489 103472675 + 3 NA intron (NR_103526, intron 2 of 10) intron (NR_103526, intron 2 of 10) 23386 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 447-31 chr10 67477605 67477799 + 3 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -74292 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 361-166 chr17 15190039 15190212 + 3 NA Intergenic Intergenic 61571 NR_039884 100616125 NR_039884 ENSG00000265110 MIR4731 - microRNA 4731 ncRNA 518-154 chr2 223391645 223391832 + 3 NA Intergenic L1MC3|LINE|L1 210623 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 593-160 chr9 73989664 73989993 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -381703 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 614-39 chr17 26812820 26813220 + 3 NA Intergenic Intergenic 276221 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 323-107 chr12 26383965 26384194 + 3 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 188506 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 359-280 chr20 22672789 22672950 + 3 NA intron (NR_146527, intron 2 of 2) intron (NR_146527, intron 2 of 2) 12475 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 742-17 chr11 91534045 91534455 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -665048 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 530-107 chr19 13679533 13679774 + 3 NA Intergenic MIR|SINE|MIR -52099 NM_001320567 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 396-186 chr2 239316223 239316416 + 3 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) 10857 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 855-36 chr3 163497799 163498116 + 3 NA Intergenic Intergenic -194656 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 941-17 chr2 238545952 238546535 + 3 NA intron (NR_037809, intron 2 of 2) intron (NR_037809, intron 2 of 2) 9256 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 456-114 chr15 87487230 87487395 + 3 NA Intergenic Intergenic -89617 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 257-147 chr17 57139697 57139861 + 3 NA Intergenic L1MD3|LINE|L1 44290 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 884-23 chr2 207363536 207364095 + 3 NA Intergenic Intergenic -94391 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 556-109 chr2 157591066 157591503 + 3 NA intron (NM_145259, intron 1 of 8) intron (NM_145259, intron 1 of 8) 6276 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 518-206 chr4 73575281 73575538 + 3 NA 3' UTR (NM_001270392, exon 10 of 10) 3' UTR (NM_001270392, exon 10 of 10) 45027 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 174-78 chr20 40319744 40319815 + 3 NA Intergenic Intergenic 315318 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 635-95 chr6 69327494 69327831 + 3 NA intron (NM_001704, intron 21 of 31) intron (NM_001704, intron 21 of 31) 468804 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 295-133 chr14 70101185 70101341 + 3 NA intron (NM_033262, intron 2 of 7) L2a|LINE|L2 -21046 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 627-96 chr5 136540169 136540572 + 3 NA Intergenic L1MA6|LINE|L1 -174894 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 437-118 chr19 50284119 50284293 + 3 NA intron (NM_024729, intron 31 of 40) L1ME1|LINE|L1 45171 NM_004977 3748 Hs.467146 NM_004977 ENSG00000131398 KCNC3 KSHIIID|KV3.3|SCA13 potassium voltage-gated channel subfamily C member 3 protein-coding 408-74 chr12 14758996 14759174 + 3 NA Intergenic Intergenic 12046 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 607-71 chr2 44654360 44654628 + 3 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 284394 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 828-53 chr9 87949227 87949823 + 3 NA Intergenic L1MEc|LINE|L1 -10265 NR_149022 497256 Hs.584108 NR_149022 LOC497256 - uncharacterized LOC497256 ncRNA 553-126 chr2 125609186 125609505 + 3 NA Intergenic Intergenic 508640 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 726-81 chr8 136342066 136342385 + 3 NA Intergenic L1MA4|LINE|L1 -188573 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 418-277 chr8 33872455 33872701 + 3 NA Intergenic Intergenic -272472 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 472-209 chr3 118050468 118050696 + 3 NA Intergenic L1ME2|LINE|L1 -359657 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 473-28 chr10 25410979 25411177 + 3 NA intron (NM_020752, intron 3 of 10) intron (NM_020752, intron 3 of 10) -234802 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 789-3 chr10 10382885 10383411 + 3 NA Intergenic Intergenic 79201 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 748-86 chr8 131173663 131174092 + 3 NA Intergenic L1M6|LINE|L1 -132968 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 406-241 chr5 131863123 131863369 + 3 NA intron (NM_001303622, intron 9 of 12) L1M2|LINE|L1 -66229 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 348-492 chr7 49449027 49449290 + 3 NA Intergenic L1MB7|LINE|L1 -324480 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 539-57 chr12 118865795 118866074 + 3 NA Intergenic Intergenic -32398 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 560-198 chrX 21069928 21070259 + 3 NA Intergenic L1MB1|LINE|L1 -304325 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 511-238 chr6 140018883 140019089 + 3 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -27725 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 388-63 chr11 59516629 59516832 + 3 NA TTS (NM_001004711) TTS (NM_001004711) 1817 NM_001004711 390199 Hs.553757 NM_001004711 ENSG00000172742 OR4D9 OR11-253 olfactory receptor family 4 subfamily D member 9 protein-coding 522-16 chr10 30404721 30404903 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -29209 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 569-32 chr10 110802059 110802350 + 3 NA intron (NM_001134363, intron 7 of 13) intron (NM_001134363, intron 7 of 13) 68700 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 772-2 chr1 64708712 64709220 + 3 NA Intergenic Intergenic -36007 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 741-78 chr8 126605701 126606090 + 3 NA Intergenic MIR|SINE|MIR -47417 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 197-129 chr3 6812441 6812517 + 3 NA Intergenic Intergenic -7030 NR_110125 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 449-87 chr15 57781002 57781330 + 3 NA Intergenic MIRb|SINE|MIR 74452 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 393-192 chr2 239960774 239960956 + 3 NA non-coding (NR_136156, exon 8 of 8) non-coding (NR_136156, exon 8 of 8) -17771 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 593-19 chr10 90063676 90063976 + 3 NA Intergenic Intergenic -106453 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 375-93 chr12 20432423 20432569 + 3 NA intron (NM_000921, intron 1 of 15) L1MA10|LINE|L1 63251 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 243-277 chr3 59219697 59219869 + 3 NA Intergenic LTR32|LTR|ERVL -169751 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 484-277 chr8 134998287 134998595 + 3 NA Intergenic Intergenic 148506 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 456-278 chr6 63086619 63086826 + 3 NA Intergenic LTR12F|LTR|ERV1 233255 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 528-182 chr4 95864901 95865113 + 3 NA Intergenic L1MB8|LINE|L1 24914 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 315-235 chr2 56574799 56574979 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -389119 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 727-31 chr14 59642952 59643357 + 3 NA intron (NM_021136, intron 3 of 8) AluJr4|SINE|Alu 3866 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 491-49 chr12 24547548 24547798 + 3 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 14818 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 533-231 chr8 95675648 95675997 + 3 NA intron (NR_038205, intron 2 of 2) ERVL-E-int|LTR|ERVL 272526 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 658-25 chr10 125580238 125580586 + 3 NA intron (NM_001318133, intron 3 of 3) intron (NM_001318133, intron 3 of 3) 6041 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 526-192 chr4 184526202 184526467 + 3 NA intron (NR_147158, intron 1 of 2) intron (NR_147158, intron 1 of 2) 11249 NR_147158 105377585 Hs.519127 NR_147158 ENSG00000271538 LINC02427 - long intergenic non-protein coding RNA 2427 ncRNA 289-5 chr1 44313893 44314051 + 3 NA intron (NM_001301698, intron 3 of 7) (TTGGT)n|Simple_repeat|Simple_repeat 41285 NM_001301698 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 545-179 chr5 28824286 28824655 + 3 NA Intergenic Intergenic -102400 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 434-301 chr8 132726307 132726552 + 3 NA intron (NM_001145153, intron 5 of 8) intron (NM_001145153, intron 5 of 8) 34153 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 522-168 chr3 19927952 19928137 + 3 NA intron (NM_001330688, intron 3 of 14) L1M5|LINE|L1 6173 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 467-156 chr20 47328208 47328499 + 3 NA intron (NM_001281774, intron 3 of 23) intron (NM_001281774, intron 3 of 23) 9851 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 620-152 chr9 74056758 74057180 + 3 NA Intergenic L1MEd|LINE|L1 -314562 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 442-262 chr6 133177547 133177734 + 3 NA Intergenic L1MEd|LINE|L1 -63717 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 162-64 chr2 189946545 189946656 + 3 NA Intergenic Intergenic 116129 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 637-47 chr16 64630991 64631390 + 3 NA Intergenic MIR3|SINE|MIR 490873 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 472-350 chrX 42423517 42423838 + 3 NA Intergenic L1ME3A|LINE|L1 354486 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 863-43 chr7 55869419 55869967 + 3 NA Intergenic LTR12C|LTR|ERV1 -6941 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 525-154 chr3 20821841 20822153 + 3 NA Intergenic Intergenic 479529 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 801-38 chr4 66563659 66564056 + 3 NA Intergenic Intergenic 287033 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 975-5 chr12 112771530 112772145 + 3 NA intron (NM_001347952, intron 1 of 21) MER112|DNA|hAT-Charlie -19701 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 721-72 chr5 123680824 123681212 + 3 NA Intergenic Intergenic 135601 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 246-165 chr18 10664339 10664499 + 3 NA non-coding (NR_110777, exon 3 of 3) non-coding (NR_110777, exon 3 of 3) 2486 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 596-178 chr9 85490893 85491244 + 3 NA Intergenic LTR1|LTR|ERV1 250961 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 409-141 chr2 54584413 54584635 + 3 NA intron (NM_178313, intron 1 of 30) intron (NM_178313, intron 1 of 30) 26130 NM_178313 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 433-258 chr7 4398159 4398344 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -263414 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 680-119 chr8 135887019 135887352 + 3 NA Intergenic Intergenic 429729 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 315-226 chr2 26954310 26954452 + 3 NA Intergenic L1MC3|LINE|L1 -16256 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 315-438 chr7 25035438 25035661 + 3 NA Intergenic L2b|LINE|L2 -55371 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 538-192 chr5 40916362 40916601 + 3 NA intron (NM_000587, intron 1 of 17) intron (NM_000587, intron 1 of 17) 6984 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 349-290 chr20 40261598 40261714 + 3 NA Intergenic Intergenic 257195 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 664-13 chr1 199870340 199870777 + 3 NA Intergenic MIR3|SINE|MIR -157152 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 610-86 chr2 119852497 119852862 + 3 NA intron (NM_002830, intron 2 of 26) L1MDa|LINE|L1 92757 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 288-472 chr9 99834296 99834418 + 3 NA TTS (NM_173199) TTS (NM_173199) 12472 NM_006981 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 535-150 chr20 1702184 1702463 + 3 NA Intergenic Intergenic -44544 NM_080816 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 273-392 chr6 91900034 91900131 + 3 NA Intergenic Intergenic -209654 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 524-274 chr8 138360355 138360629 + 3 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 136769 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 356-397 chr5 63402167 63402344 + 3 NA Intergenic L2a|LINE|L2 560037 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 434-225 chr5 76899610 76899880 + 3 NA intron (NM_130772, intron 4 of 4) L1MA1|LINE|L1 49731 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 354-324 chr4 55531166 55531353 + 3 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 14673 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 708-5 chr1 175952683 175953126 + 3 NA intron (NM_022457, intron 18 of 19) AluJo|SINE|Alu 15575 NR_162097 113839518 NR_162097 MIR1843 - microRNA 1843 ncRNA 536-110 chr2 22966880 22967125 + 3 NA Intergenic Intergenic -418177 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 812-35 chr3 144371634 144372199 + 3 NA Intergenic L1PA13|LINE|L1 398835 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 393-346 chr8 38804937 38805153 + 3 NA promoter-TSS (NM_001352802) promoter-TSS (NM_001352802) -405 NM_001352802 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 507-62 chr12 1058194 1058560 + 3 NA intron (NR_027949, intron 2 of 15) L1P4|LINE|L1 30629 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 654-28 chr12 56851550 56851824 + 3 NA Intergenic L1MB7|LINE|L1 82721 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 480-152 chr2 109441578 109441816 + 3 NA intron (NM_001099289, intron 7 of 9) L1MEc|LINE|L1 -128072 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 573-90 chr2 29341963 29342321 + 3 NA intron (NM_004304, intron 5 of 28) L1MB2|LINE|L1 -118242 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 625-55 chr2 171225448 171225855 + 3 NA intron (NM_001136554, intron 1 of 20) L1M4|LINE|L1 5642 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 710 chr1 29844005 29844378 + 3 NA Intergenic L2a|LINE|L2 193421 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 672-6 chr1 233494032 233494380 + 3 NA Intergenic Intergenic -119900 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 280-441 chr9 89049362 89049491 + 3 NA intron (NM_016848, intron 7 of 11) intron (NM_016848, intron 7 of 11) 57958 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 222-93 chr12 117158674 117158754 + 3 NA intron (NM_033624, intron 9 of 11) intron (NM_033624, intron 9 of 11) 31756 NM_015002 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 667-59 chr21 29984108 29984484 + 3 NA Intergenic L1MD2|LINE|L1 -44244 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 510-222 chr5 28982619 28982886 + 3 NA Intergenic AluJo|SINE|Alu 55882 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 179-117 chr8 78742595 78742681 + 3 NA intron (NM_001199886, intron 2 of 4) (CTTTAT)n|Simple_repeat|Simple_repeat -18264 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 304-73 chr11 21373427 21373590 + 3 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 703922 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 711-52 chr4 100230332 100230696 + 3 NA Intergenic HERVK11-int|LTR|ERVK -40046 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 478-40 chr11 42323737 42323993 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -70175 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 879-34 chr9 101585926 101586510 + 3 NA intron (NM_133445, intron 6 of 8) L2a|LINE|L2 8751 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 368-280 chr3 10895311 10895520 + 3 NA intron (NM_014229, intron 6 of 13) L1PA10|LINE|L1 79187 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 452-142 chr2 164346719 164346872 + 3 NA Intergenic HERVL-int|LTR|ERVL 221700 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 732-57 chr3 39197389 39197836 + 3 NA Intergenic L1M3|LINE|L1 -5017 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 585-149 chr7 26263387 26263736 + 3 NA Intergenic L2c|LINE|L2 -28317 NM_001362753 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 861-13 chr2 77176169 77176787 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 190513 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 807-30 chr2 126875142 126875535 + 3 NA Intergenic LTR10A|LTR|ERV1 -23552 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 491-88 chr17 5462119 5462373 + 3 NA intron (NM_001199699, intron 2 of 10) intron (NM_001199699, intron 2 of 10) 6736 NM_020162 56919 Hs.250456 NM_020162 ENSG00000005100 DHX33 DDX33 DEAH-box helicase 33 protein-coding 624-69 chr2 115281925 115282226 + 3 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -27162 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 377-345 chr6 62165473 62165616 + 3 NA intron (NR_146874, intron 2 of 13) L1M5|LINE|L1 120681 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 759-45 chr21 30907800 30908097 + 3 NA Intergenic L1MA7|LINE|L1 -26368 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 448-85 chr15 27130865 27131065 + 3 NA intron (NM_001270873, intron 3 of 5) L1MB3|LINE|L1 30354 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 562-182 chr5 119260409 119260610 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -8250 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 569-118 chr3 68675836 68676194 + 3 NA Intergenic Intergenic 175378 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 385-377 chr8 54196467 54196702 + 3 NA Intergenic L1MA4|LINE|L1 61343 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 469-33 chr10 63375997 63376255 + 3 NA intron (NM_001322258, intron 2 of 24) L1MB3|LINE|L1 -3078 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 498-290 chr9 122643723 122643982 + 3 NA Intergenic L1PA7|LINE|L1 -14317 NM_001004450 347169 Hs.553710 NM_001004450 ENSG00000280094 OR1B1 OR9-26|OR9-B olfactory receptor family 1 subfamily B member 1 (gene/pseudogene) protein-coding 577-209 chrX 73205120 73205354 + 3 NA Intergenic L1M4c|LINE|L1 9614 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 412-135 chr18 44459859 44460043 + 3 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 71746 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 404-3 chr1 41400605 41400800 + 3 NA Intergenic Intergenic -25033 NR_135817 101929901 NR_135817 ENSG00000229901 LOC101929901 - uncharacterized LOC101929901 ncRNA 528-254 chr8 115795365 115795649 + 3 NA Intergenic Intergenic -126532 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 294-434 chr7 46298877 46299020 + 3 NA Intergenic L1MDa|LINE|L1 -377676 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 429-235 chr5 63701351 63701619 + 3 NA Intergenic L1PA15|LINE|L1 260807 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 369-159 chr17 71579156 71579420 + 3 NA Intergenic MIR|SINE|MIR -377109 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 382-427 chr8 136387035 136387205 + 3 NA Intergenic Intergenic -143678 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1077-8 chr2 51406029 51406792 + 3 NA intron (NR_135237, intron 4 of 10) L1MC1|LINE|L1 373809 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 281-102 chr13 48800993 48801178 + 3 NA Intergenic Intergenic 147156 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 553-30 chr11 42687076 42687421 + 3 NA Intergenic L1MA9|LINE|L1 -433558 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 469-194 chr4 33528228 33528474 + 3 NA Intergenic Intergenic 511542 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 496-235 chr6 54075305 54075494 + 3 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -27805 NR_046710 100873951 NR_046710 MLIP-AS1 - MLIP antisense RNA 1 ncRNA 464-58 chr14 46667765 46668042 + 3 NA Intergenic Intergenic -16122 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 561-207 chr8 118401080 118401463 + 3 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -219730 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 231-321 chr7 3534539 3534701 + 3 NA intron (NM_152744, intron 1 of 44) L1MB1|LINE|L1 233368 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 517-21 chr1 221522824 221523028 + 3 NA Intergenic MER58C|DNA|hAT-Charlie -186630 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 294-23 chr1 216066804 216066998 + 3 NA intron (NM_206933, intron 30 of 71) MIRb|SINE|MIR -5564 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 494-14 chr1 159614397 159614680 + 3 NA Intergenic Intergenic 26712 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 281-434 chr8 98835181 98835387 + 3 NA intron (NM_001256312, intron 3 of 12) LTR41|LTR|ERVL -9596 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 246-132 chr15 80534780 80534927 + 3 NA intron (NM_014862, intron 8 of 18) intron (NM_014862, intron 8 of 18) 28091 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 263-98 chr14 40554272 40554389 + 3 NA Intergenic Intergenic -400381 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 523-193 chr4 16750356 16750548 + 3 NA TTS (NR_130734) TTS (NR_130734) 148193 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 1136-5 chr14 101167437 101168173 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 46949 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 1038-11 chr22 34541258 34541779 + 3 NA Intergenic L1ME1|LINE|L1 456398 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 431-70 chr12 130224920 130225202 + 3 NA Intergenic Intergenic 62602 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 501-106 chr2 71327484 71327733 + 3 NA Intergenic L2a|LINE|L2 -4147 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 461-171 chr3 61041871 61042173 + 3 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 209430 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 737-12 chr11 115822276 115822682 + 3 NA Intergenic L1M5|LINE|L1 -62279 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 966-12 chr19 27484682 27485086 + 3 NA Intergenic ALR/Alpha|Satellite|centr -308547 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 433-218 chr5 33696664 33696856 + 3 NA intron (NM_001324512, intron 3 of 21) intron (NM_001324512, intron 3 of 21) 195230 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 637-66 chr2 117111058 117111381 + 3 NA Intergenic L1MC3|LINE|L1 -703472 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 710-48 chr2 194007771 194008215 + 3 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -336276 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 771-42 chr2 127035956 127036386 + 3 NA Intergenic LTR37-int|LTR|ERV1 45894 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 447-262 chr8 68369672 68369845 + 3 NA intron (NR_146187, intron 1 of 13) ERVL-E-int|LTR|ERVL -38267 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 807-20 chr15 87263028 87263505 + 3 NA Intergenic L2a|LINE|L2 -274840 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 542-231 chr8 137387459 137387704 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 26007 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 312-13 chr1 86589510 86589649 + 3 NA intron (NR_135837, intron 4 of 4) L1ME3A|LINE|L1 42501 NM_012128 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 463-115 chr18 14062255 14062542 + 3 NA Intergenic MER67B|LTR|ERV1 70037 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 421-231 chr5 17907682 17907857 + 3 NA intron (NR_134286, intron 5 of 7) intron (NR_134286, intron 5 of 7) 100495 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 610-147 chr6 69249720 69250095 + 3 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 546559 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 626-102 chr4 76414504 76414849 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR -7371 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 216-256 chr4 97093481 97093555 + 3 NA Intergenic AluSx1|SINE|Alu -273408 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 548-20 chr10 10348486 10348736 + 3 NA Intergenic L1MA3|LINE|L1 113738 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 579-167 chr8 82280848 82281094 + 3 NA Intergenic L1MEg|LINE|L1 -438685 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 1026-27 chrX 64944817 64945238 + 3 NA intron (NM_001178032, intron 1 of 4) L1P3|LINE|L1 31423 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 702-53 chr20 15850309 15850901 + 3 NA intron (NM_001351663, intron 8 of 17) MamRep1527|LTR|LTR 72709 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 388-95 chr13 61621367 61621574 + 3 NA Intergenic Tigger3|DNA|TcMar-Tigger -193524 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 385-199 chr2 203202001 203202163 + 3 NA intron (NM_001114132, intron 49 of 54) intron (NM_001114132, intron 49 of 54) -36359 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 954-6 chr11 84806387 84806884 + 3 NA intron (NM_001351274, intron 5 of 26) L1MD1|LINE|L1 -85693 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 558-210 chr8 52181006 52181262 + 3 NA intron (NM_014682, intron 8 of 25) intron (NM_014682, intron 8 of 25) -13228 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 484-12 chr1 110866124 110866371 + 3 NA Intergenic L1PA15|LINE|L1 -4952 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 653-13 chr1 247030361 247030798 + 3 NA intron (NR_037894, intron 1 of 6) L1MC|LINE|L1 -22522 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 427-72 chr14 65404704 65404933 + 3 NA Intergenic Intergenic -5774 NR_038167 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 556-195 chr6 98806168 98806485 + 3 NA Intergenic L1MEc|LINE|L1 25374 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 304-197 chr17 66118048 66118273 + 3 NA intron (NM_001353129, intron 6 of 26) L1MA5A|LINE|L1 73732 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 282-202 chr2 50986631 50986782 + 3 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 45426 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 540-2 chr1 40440235 40440464 + 3 NA Intergenic AluJb|SINE|Alu -9715 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 553-187 chr5 15307763 15308054 + 3 NA Intergenic L1PA16|LINE|L1 -41348 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 430-89 chr14 63090755 63090997 + 3 NA Intergenic L2a|LINE|L2 -45418 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 452-87 chr15 25100452 25100658 + 3 NA TTS (NR_003340) TTS (NR_003340) -1019 NR_003341 100033439 NR_003341 ENSG00000251896 SNORD116-27 HBII-85-27 small nucleolar RNA, C/D box 116-27 snoRNA 475-191 chr3 189738371 189738620 + 3 NA intron (NM_003722, intron 2 of 13) MIRc|SINE|MIR -51164 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 600-140 chr9 27203356 27203571 + 3 NA intron (NM_001290077, intron 12 of 21) intron (NM_001290077, intron 12 of 21) 79330 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 540-72 chr14 89108299 89108607 + 3 NA Intergenic LTR33|LTR|ERVL 283802 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 485-172 chr22 33913978 33914220 + 3 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 6329 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 1146-11 chr4 101555419 101556035 + 3 NA Intergenic Intergenic 207950 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 522-127 chr2 48160276 48160572 + 3 NA Intergenic L1MA4|LINE|L1 -154258 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 897-16 chr18 47700644 47701330 + 3 NA Intergenic Intergenic 229672 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 512-262 chr7 113993625 113993912 + 3 NA Intergenic L1MA3|LINE|L1 -74759 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 384-137 chr16 63364544 63364744 + 3 NA Intergenic MER113|DNA|hAT-Charlie -1328206 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 430-234 chr5 17294222 17294399 + 3 NA Intergenic Intergenic 76679 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 439-41 chr10 121532362 121532632 + 3 NA intron (NR_073009, intron 4 of 16) intron (NR_073009, intron 4 of 16) -1183 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 535-264 chrX 99503194 99503394 + 3 NA Intergenic L2|LINE|L2 906979 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 651-95 chr4 117182356 117182733 + 3 NA Intergenic L1PA7|LINE|L1 -96968 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 414-94 chr15 22898224 22898382 + 3 NA intron (NM_001033028, intron 7 of 15) AluSc8|SINE|Alu 19010 NM_001033028 23191 Hs.26704 NM_014608 ENSG00000273749 CYFIP1 P140SRA-1|SHYC|SRA-1|SRA1 cytoplasmic FMR1 interacting protein 1 protein-coding 1509 chr4 68209183 68210009 + 3 NA intron (NR_104048, intron 2 of 9) intron (NR_104048, intron 2 of 9) 8484 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 698-28 chr17 3122221 3122679 + 3 NA Intergenic L1M3|LINE|L1 5101 NM_003555 8390 Hs.248183 NM_003555 ENSG00000183024 OR1G1 OR17-130|OR17-209|OR1G2 olfactory receptor family 1 subfamily G member 1 protein-coding 443-251 chr5 136686535 136686695 + 3 NA Intergenic L1PA15-16|LINE|L1 -321139 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 294-107 chr14 34277549 34277776 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 184578 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 772-56 chr8 106039999 106040350 + 3 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 20329 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 637-46 chr16 6918766 6919101 + 3 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 145124 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 621-115 chr7 20188920 20189299 + 3 NA intron (NM_182762, intron 1 of 6) L2a|LINE|L2 28275 NM_182762 346389 Hs.598388 NM_182762 ENSG00000183742 MACC1 7A5|SH3BP4L MET transcriptional regulator MACC1 protein-coding 632-111 chr8 5746911 5747221 + 3 NA Intergenic L1MC3|LINE|L1 659482 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 565-68 chr19 37784164 37784399 + 3 NA Intergenic L1MA9|LINE|L1 -4691 NM_152360 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 466-161 chr21 27413066 27413319 + 3 NA Intergenic Intergenic -309187 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 330-376 chr4 46971863 46972114 + 3 NA intron (NM_000809, intron 6 of 8) intron (NM_000809, intron 6 of 8) 21593 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 628-14 chr1 112303180 112303548 + 3 NA Intergenic Intergenic -92850 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 708-12 chr11 7295389 7295765 + 3 NA intron (NM_175733, intron 1 of 6) MLT1A0-int|LTR|ERVL-MaLR 43673 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 530-98 chr17 52350350 52350644 + 3 NA Intergenic Intergenic -40025 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 920-3 chr1 75002437 75003061 + 3 NA Intergenic Intergenic -125685 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 243-164 chr17 51643310 51643463 + 3 NA intron (NM_001082533, intron 7 of 9) intron (NM_001082533, intron 7 of 9) 207959 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 836-28 chr19 35164708 35165016 + 3 NA intron (NM_014164, intron 6 of 8) L2a|LINE|L2 10127 NM_144779 53827 Hs.333418 NM_014164 ENSG00000089327 FXYD5 DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 761-37 chr21 44632772 44633138 + 3 NA intron (NM_144991, intron 1 of 11) L1M4|LINE|L1 -4401 NM_181688 353333 Hs.474001 NM_181688 ENSG00000221859 KRTAP10-10 KAP10.10|KAP18.10|KRTAP18-10|KRTAP18.10 keratin associated protein 10-10 protein-coding 444-92 chr17 3457355 3457583 + 3 NA intron (NM_001321336, intron 5 of 8) L1MA9|LINE|L1 14278 NM_032598 84690 Hs.351068 NM_032598 ENSG00000141255 SPATA22 NYD-SP20|NYDSP20 spermatogenesis associated 22 protein-coding 540-56 chr12 111133683 111133991 + 3 NA intron (NM_001370598, intron 1 of 21) ERVL-B4-int|LTR|ERVL 33833 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 478-276 chr7 103876454 103876734 + 3 NA intron (NM_005045, intron 2 of 64) intron (NM_005045, intron 2 of 64) 112922 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 541-2 chr1 40496489 40496726 + 3 NA TTS (NM_001320179) TTS (NM_001320179) -12112 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 440-272 chr9 96793085 96793295 + 3 NA Intergenic L1PREC2|LINE|L1 -15061 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 518-171 chr3 32625167 32625455 + 3 NA Intergenic Intergenic -54387 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 648-151 chr9 88649192 88649594 + 3 NA Intergenic L1MEc|LINE|L1 96512 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 292-298 chr3 177749371 177749528 + 3 NA intron (NR_047568, intron 3 of 3) MSTD|LTR|ERVL-MaLR -67416 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 890-37 chr8 71578334 71578849 + 3 NA Intergenic L1MEg|LINE|L1 -30497 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 556-169 chr5 2366242 2366563 + 3 NA Intergenic Intergenic -54201 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 535-217 chr6 61270262 61270475 + 3 NA Intergenic Intergenic -303762 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 637-73 chr20 22904981 22905303 + 3 NA Intergenic Intergenic -130278 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 470-277 chr8 132150502 132150687 + 3 NA intron (NM_001204824, intron 9 of 14) MER61-int|LTR|ERV1 -45329 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 399-17 chr1 194195469 194195684 + 3 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR 890831 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 826-56 chr6 75042751 75043095 + 3 NA Intergenic L1MB1|LINE|L1 85859 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 900-43 chr7 87205534 87205960 + 3 NA intron (NR_138030, intron 1 of 3) THE1B-int|LTR|ERVL-MaLR 13985 NM_024315 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 208-48 chr11 109070024 109070127 + 3 NA Intergenic L1M4b|LINE|L1 -352115 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 431-193 chr4 37704548 37704741 + 3 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -18268 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 715-45 chr20 2607111 2607568 + 3 NA intron (NM_080751, intron 11 of 19) HAL1M8|LINE|L1 -45293 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 941-22 chr4 149209328 149209854 + 3 NA intron (NR_125887, intron 5 of 12) MIR3|SINE|MIR 55296 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 623-60 chr2 77145122 77145382 + 3 NA intron (NR_146416, intron 1 of 1) (TA)n|Simple_repeat|Simple_repeat 159287 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 493-143 chr2 62218197 62218483 + 3 NA intron (NM_001319075, intron 1 of 1) intron (NM_001319075, intron 1 of 1) 2819 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 1072-17 chr5 180923404 180924091 + 3 NA intron (NM_001159710, intron 2 of 6) L1M5|LINE|L1 14183 NM_001159710 79908 Hs.189109 NM_024850 ENSG00000113303 BTNL8 BTN9.2 butyrophilin like 8 protein-coding 559-55 chr15 69895323 69895561 + 3 NA Intergenic L2a|LINE|L2 60208 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 1009-12 chr2 80823733 80824381 + 3 NA Intergenic LTR82B|LTR|ERVL 510678 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 626-3 chr1 38414265 38414672 + 3 NA Intergenic L1MC3|LINE|L1 -60728 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 502-186 chr3 146236153 146236427 + 3 NA intron (NM_001128304, intron 2 of 10) intron (NM_001128304, intron 2 of 10) 14325 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 932-32 chr8 49283331 49283755 + 3 NA Intergenic Intergenic 211199 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 1293-9 chr8 129571009 129571869 + 3 NA intron (NR_130917, intron 1 of 3) L1M4|LINE|L1 3579 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 533-88 chr18 64909052 64909380 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -649161 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 540-39 chr11 81376516 81376771 + 3 NA Intergenic Intergenic 514193 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 440-60 chr13 90802649 90802798 + 3 NA Intergenic Intergenic 123874 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 228-323 chr7 83619927 83620036 + 3 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 21450 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 364-366 chr5 145845463 145845620 + 3 NA Intergenic Intergenic -10199 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 236-147 chr17 71858425 71858516 + 3 NA Intergenic Intergenic 167509 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 1054-8 chr21 31243428 31243958 + 3 NA intron (NM_001353686, intron 6 of 27) L1M4a1|LINE|L1 -82753 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 484-211 chr5 43267080 43267360 + 3 NA intron (NR_072980, intron 2 of 3) L1PB3|LINE|L1 45961 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 412-46 chr11 20608433 20608726 + 3 NA intron (NM_004211, intron 5 of 15) intron (NM_004211, intron 5 of 15) 9179 NM_004211 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 445-118 chr2 50875275 50875607 + 3 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 156691 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 846-21 chr2 41439323 41439684 + 3 NA Intergenic L1MA1|LINE|L1 -438052 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 449-140 chr20 11288447 11288615 + 3 NA Intergenic MIR|SINE|MIR -15148 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 932-31 chr7 64508800 64509188 + 3 NA Intergenic LTR25-int|LTR|ERV1 54077 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 520-104 chr16 24381392 24381590 + 3 NA Intergenic LTR26D|LTR|ERV1 125938 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 449-172 chr3 111817285 111817555 + 3 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -41760 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 438-172 chr3 97141851 97142127 + 3 NA intron (NM_001080448, intron 3 of 17) MER75|DNA|PiggyBac -297618 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 542-192 chr6 170121043 170121243 + 3 NA Intergenic L1MEf|LINE|L1 -39499 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 406-86 chr14 72125943 72126180 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 192534 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 435-9 chr1 61548890 61549081 + 3 NA Intergenic L1M1|LINE|L1 -105257 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 483-107 chr2 21964089 21964390 + 3 NA Intergenic L1ME4a|LINE|L1 -253587 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 668-76 chr4 182072546 182073040 + 3 NA Intergenic Intergenic 71722 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 270-292 chr5 30215932 30216049 + 3 NA Intergenic Intergenic 335430 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 645-58 chr2 118428989 118429380 + 3 NA Intergenic (ATATGT)n|Simple_repeat|Simple_repeat 173782 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 316-385 chr4 33442409 33442570 + 3 NA Intergenic Intergenic 597404 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 608-31 chr12 51550647 51551040 + 3 NA Intergenic L1ME2|LINE|L1 -40390 NM_014191 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 343-203 chr18 11238972 11239129 + 3 NA Intergenic L1ME1|LINE|L1 -90288 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 207-27 chr1 232764231 232764325 + 3 NA Intergenic Intergenic -21563 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 977-10 chr2 171428911 171429296 + 3 NA intron (NM_001321157, intron 1 of 10) Charlie29a|DNA|hAT-Charlie 4887 NM_001321154 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 458-224 chr6 67377553 67377711 + 3 NA Intergenic Intergenic -677719 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 366-230 chr2 154580697 154580910 + 3 NA Intergenic L1MC3|LINE|L1 -117778 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 460-180 chr21 17015955 17016163 + 3 NA Intergenic L1PA8A|LINE|L1 -422831 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 414-363 chrX 70077108 70077414 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 14804 NM_207320 139562 Hs.447381 NM_207320 ENSG00000189401 OTUD6A DUBA2|HSHIN6 OTU deubiquitinase 6A protein-coding 526-164 chr3 13816387 13816659 + 3 NA 3' UTR (NM_004625, exon 4 of 4) 3' UTR (NM_004625, exon 4 of 4) 63548 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 487-306 chr9 28716467 28716710 + 3 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 2717 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 584-154 chr6 93593733 93594100 + 3 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR -110101 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 312-75 chr11 16652206 16652312 + 3 NA intron (NM_001367872, intron 2 of 16) L1PB1|LINE|L1 86218 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 557-61 chr16 17045964 17046434 + 3 NA Intergenic L1MA9|LINE|L1 -88305 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 563-199 chrX 58394072 58394409 + 3 NA Intergenic ALR/Alpha|Satellite|centr -483607 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 633-82 chr3 192774890 192775251 + 3 NA Intergenic THE1A-int|LTR|ERVL-MaLR -47529 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 650-84 chr4 36863349 36863594 + 3 NA Intergenic Intergenic -138308 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 313-560 chr9 108736090 108736284 + 3 NA Intergenic L1MA3|LINE|L1 119799 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 515-34 chr11 15510958 15511168 + 3 NA Intergenic L1ME2|LINE|L1 -132822 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 684-87 chr4 66820740 66821190 + 3 NA Intergenic Intergenic 544141 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 455-222 chr5 63751730 63751995 + 3 NA Intergenic Intergenic 210430 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 429-28 chr1 244190056 244190322 + 3 NA Intergenic Intergenic 136984 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 759-21 chr14 53329089 53329478 + 3 NA Intergenic MIRb|SINE|MIR 175929 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 493-194 chr3 26966982 26967353 + 3 NA Intergenic L1ME2z|LINE|L1 249356 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 647-37 chr18 2361007 2361347 + 3 NA Intergenic Intergenic 210328 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 218-186 chr20 14015734 14015840 + 3 NA intron (NM_001351663, intron 2 of 17) L1MB4|LINE|L1 20271 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 641-86 chr4 61058501 61058846 + 3 NA Intergenic Intergenic -84983 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 279-189 chr2 111933207 111933345 + 3 NA intron (NM_006343, intron 2 of 18) intron (NM_006343, intron 2 of 18) 34669 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 615-19 chr11 70448911 70449381 + 3 NA Intergenic Tigger16a|DNA|TcMar-Tigger 50617 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 582-153 chr8 84402351 84402638 + 3 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -12990 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 660-110 chr8 122885988 122886378 + 3 NA intron (NM_001362797, intron 3 of 4) L1MC2|LINE|L1 104528 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 475-142 chr2 121857658 121857975 + 3 NA Intergenic Intergenic 102165 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 515-192 chr4 162099518 162099779 + 3 NA intron (NM_020116, intron 2 of 15) L1MC1|LINE|L1 64352 NM_020116 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 624-107 chr6 46314500 46314844 + 3 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) 11220 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 721-4 chr1 102762455 102762768 + 3 NA Intergenic MIRc|SINE|MIR 345885 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 883-44 chr9 107890659 107891072 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -401096 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 563-155 chr5 143911477 143911778 + 3 NA Intergenic Intergenic 99466 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 595-64 chr16 84708569 84708823 + 3 NA intron (NM_001272075, intron 2 of 14) intron (NM_001272075, intron 2 of 14) 8696 NR_073578 9100 Hs.136778 NM_005153 ENSG00000103194 USP10 UBPO ubiquitin specific peptidase 10 protein-coding 626-70 chr2 116232749 116233140 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 889129 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 442-238 chr5 118736302 118736565 + 3 NA Intergenic Intergenic 140245 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 427-61 chr12 133076275 133076527 + 3 NA Intergenic Intergenic -3802 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 342-436 chr5 167211642 167211841 + 3 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -43340 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 349-140 chr12 125905389 125905585 + 3 NA Intergenic Intergenic 77887 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 462-282 chr8 88440563 88440859 + 3 NA Intergenic Intergenic -113228 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 435-146 chr3 3416261 3416527 + 3 NA Intergenic L1PB1|LINE|L1 -236677 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 346-355 chr4 65151516 65151643 + 3 NA Intergenic Intergenic -147079 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 604-176 chr9 126042582 126042964 + 3 NA Intergenic L1MD|LINE|L1 233142 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 335-272 chr2 164458599 164458731 + 3 NA Intergenic Intergenic 109830 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 441-17 chr1 230437254 230437498 + 3 NA Intergenic Intergenic -11044 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 711-35 chr2 201700724 201701150 + 3 NA 3' UTR (NM_020919, exon 34 of 34) 3' UTR (NM_020919, exon 34 of 34) -2293 NM_033066 58538 Hs.63085 NM_033066 ENSG00000082126 MPP4 ALS2CR5|DLG6 membrane palmitoylated protein 4 protein-coding 233-178 chr2 122375066 122375204 + 3 NA Intergenic LTR85c|LTR|Gypsy? 619484 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 554-139 chr21 27080558 27080921 + 3 NA Intergenic L2|LINE|L2 -113651 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 515-39 chr11 31077139 31077414 + 3 NA intron (NM_001367979, intron 18 of 38) MER58A|DNA|hAT-Charlie -84590 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 390-8 chr1 68540058 68540267 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 -43080 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 659-78 chr4 35036913 35037308 + 3 NA Intergenic L1MB1|LINE|L1 -767363 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 482-24 chr1 214798501 214798786 + 3 NA Intergenic L1PA17|LINE|L1 195448 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 205-162 chr2 225888532 225888612 + 3 NA Intergenic MLT2B3|LTR|ERVL -254222 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 641-41 chr15 57439192 57439639 + 3 NA exon (NM_001252335, exon 3 of 20) exon (NM_001252335, exon 3 of 20) 62910 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 662-102 chr8 124119289 124119696 + 3 NA intron (NM_001039112, intron 40 of 40) intron (NM_001039112, intron 40 of 40) 52030 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 590-121 chr4 46555949 46556303 + 3 NA Intergenic Intergenic -165998 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 491-182 chr4 39607314 39607641 + 3 NA intron (NM_174921, intron 1 of 4) FLAM_C|SINE|Alu 19644 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 786-6 chr10 30490045 30490519 + 3 NA Intergenic AluJo|SINE|Alu 55636 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 294-403 chr6 46409290 46409435 + 3 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) 81961 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 636-132 chr6 165594306 165594567 + 3 NA intron (NM_006661, intron 1 of 22) L1MC4a|LINE|L1 67664 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 180-156 chr7 53172536 53172636 + 3 NA Intergenic Intergenic 136953 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 487-251 chr6 121218589 121218798 + 3 NA intron (NR_104452, intron 22 of 35) MLT2A1|LTR|ERVL 115787 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 593-76 chr2 107633376 107633770 + 3 NA Intergenic L1MC3|LINE|L1 104154 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 509-55 chr12 532432 532607 + 3 NA intron (NM_173593, intron 1 of 19) MER31B|LTR|ERV1 53967 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 399-192 chr22 16814630 16814783 + 3 NA intron (NM_001318251, intron 1 of 3) L1MB7|LINE|L1 6993 NM_175878 150165 Hs.356069 NM_175878 ENSG00000172967 XKR3 XRG3|XTES XK related 3 protein-coding 351-128 chr14 62922936 62923159 + 3 NA intron (NM_139318, intron 7 of 10) L1MA9|LINE|L1 122411 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 409-274 chr7 12341908 12342062 + 3 NA intron (NM_001135924, intron 23 of 28) intron (NM_001135924, intron 23 of 28) 61880 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 777-61 chr6 61626452 61626923 + 3 NA intron (NR_146870, intron 13 of 15) intron (NR_146870, intron 13 of 15) 52557 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 562-155 chr3 193933171 193933442 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 60932 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 558-141 chr3 122061583 122061867 + 3 NA intron (NM_001206925, intron 1 of 5) L1MD2|LINE|L1 6363 NM_001206925 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 469-64 chr12 38795746 38795916 + 3 NA intron (NM_153634, intron 6 of 19) L1MB2|LINE|L1 109760 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 609-90 chr4 69572951 69573240 + 3 NA Intergenic Intergenic -47081 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 402-309 chr7 2950450 2950668 + 3 NA intron (NM_001324281, intron 3 of 25) L1MB8|LINE|L1 93308 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 522-191 chr4 64493829 64494018 + 3 NA Intergenic Intergenic -84463 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 458-221 chr6 52880256 52880430 + 3 NA Intergenic Intergenic 29355 NM_001363542 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 276-123 chr13 42528640 42528841 + 3 NA Intergenic L1MC4a|LINE|L1 -33996 NM_033012 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 464-247 chr8 12949917 12950118 + 3 NA intron (NM_020844, intron 1 of 4) AluJo|SINE|Alu 4344 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 518-283 chr7 94372768 94372966 + 3 NA intron (NR_147206, intron 5 of 5) MER5A|DNA|hAT-Charlie 19325 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 263-36 chr10 7221774 7221903 + 3 NA intron (NM_001029880, intron 10 of 20) L1ME1|LINE|L1 -35054 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 498-271 chr8 75759169 75759424 + 3 NA Intergenic Intergenic 219328 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 369-59 chr11 57966236 57966468 + 3 NA Intergenic L1PREC2|LINE|L1 -57529 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 482-19 chr1 172347525 172347763 + 3 NA intron (NM_015569, intron 17 of 20) L1MEd|LINE|L1 -73041 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 578-163 chr7 135334242 135334599 + 3 NA Intergenic Intergenic 102441 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 671 chr1 34562209 34562703 + 3 NA Intergenic Intergenic 107238 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 694-53 chr18 6471703 6472122 + 3 NA Intergenic L2|LINE|L2 -39504 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 426-154 chr2 203768190 203768425 + 3 NA Intergenic L1ME3E|LINE|L1 61668 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 454-198 chr22 46164056 46164207 + 3 NA intron (NM_001001928, intron 2 of 7) AluSq2|SINE|Alu 13336 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 594-135 chr7 9058028 9058291 + 3 NA Intergenic L1MA7|LINE|L1 -576111 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 432-190 chr3 177454994 177455188 + 3 NA intron (NR_047568, intron 1 of 3) MER113|DNA|hAT-Charlie 13170 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 1164-9 chr5 63778489 63779115 + 3 NA Intergenic Intergenic 183490 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 335-518 chr7 133658102 133658263 + 3 NA intron (NM_021807, intron 10 of 17) L2b|LINE|L2 166706 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 734-16 chr11 113127282 113127617 + 3 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 146452 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 851-30 chr21 30484497 30485077 + 3 NA Intergenic Intergenic 2649 NM_181608 337969 Hs.553692 NM_181608 ENSG00000186965 KRTAP19-2 KAP19.2 keratin associated protein 19-2 protein-coding 493-193 chr3 25348516 25348757 + 3 NA intron (NM_001290300, intron 1 of 7) Charlie7|DNA|hAT-Charlie 7834 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 435-234 chr8 55253372 55253662 + 3 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 151489 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 636-135 chr7 49313941 49314383 + 3 NA Intergenic L1MD2|LINE|L1 389615 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 544-6 chr1 49487301 49487523 + 3 NA intron (NR_136623, intron 2 of 12) THE1D|LTR|ERVL-MaLR -15327 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 283-185 chr17 68608011 68608153 + 3 NA Intergenic L1ME1|LINE|L1 -6715 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 434-311 chr9 26308514 26308749 + 3 NA Intergenic MIRb|SINE|MIR 241956 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 972-25 chr9 118920358 118921087 + 3 NA Intergenic L1MA2|LINE|L1 241051 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 620-111 chr5 94405548 94405773 + 3 NA intron (NM_001145678, intron 15 of 20) intron (NM_001145678, intron 15 of 20) 212944 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 467-133 chr2 71468561 71468773 + 3 NA intron (NM_001130985, intron 1 of 54) L2b|LINE|L2 1968 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 647-88 chr6 133189702 133190012 + 3 NA Intergenic Intergenic -51500 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 500-301 chr8 107136821 107137131 + 3 NA Intergenic Intergenic 199539 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 1013-12 chr20 52701094 52701664 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie 80541 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 629-24 chr10 98083851 98084254 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -50572 NM_001256620 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 480-120 chr18 14057633 14057911 + 3 NA Intergenic Intergenic 74663 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 398-65 chr11 135018945 135019130 + 3 NA Intergenic L1MD3|LINE|L1 33685 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 335-295 chr20 42062972 42063199 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -444708 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 693-16 chr10 116528698 116529060 + 3 NA Intergenic LTR27|LTR|ERV1 -17052 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 543-186 chr4 84638974 84639325 + 3 NA intron (NM_001263, intron 9 of 12) intron (NM_001263, intron 9 of 12) 56022 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 809-7 chr12 28900526 28900907 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -248562 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 420-184 chr3 62999030 62999326 + 3 NA Intergenic Intergenic -103510 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 493-298 chr8 114410365 114410631 + 3 NA Intergenic L1M5|LINE|L1 -973559 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 237-175 chr2 62362088 62362173 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 144065 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 441-170 chr3 188833511 188833712 + 3 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 114028 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 553-164 chr3 193595868 193596185 + 3 NA intron (NM_130831, intron 1 of 27) Charlie7a|DNA|hAT-Charlie 2818 NM_001354663 4976 Hs.594504 NM_015560 ENSG00000198836 OPA1 BERHS|MGM1|MTDPS14|NPG|NTG|largeG OPA1 mitochondrial dynamin like GTPase protein-coding 516-280 chrX 94563318 94563565 + 3 NA Intergenic L1M1|LINE|L1 499785 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 684-89 chr4 96595612 96595928 + 3 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 285067 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 470-6 chr1 97909183 97909356 + 3 NA intron (NM_000110, intron 1 of 22) L2a|LINE|L2 11790 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 489-9 chr1 110772309 110772596 + 3 NA Intergenic LTR16|LTR|ERVL -97512 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 627-42 chr18 5268902 5269159 + 3 NA Intergenic L1MA2|LINE|L1 26696 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 395-235 chr3 158026820 158027080 + 3 NA Intergenic Intergenic 79213 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 712-31 chr16 5170644 5171028 + 3 NA Intergenic Intergenic -73016 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 557-77 chr18 12555572 12555922 + 3 NA intron (NM_020148, intron 2 of 15) L1MA3|LINE|L1 100985 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 398-363 chr8 115278100 115278292 + 3 NA Intergenic L1MB1|LINE|L1 389817 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 904-9 chr12 7245930 7246379 + 3 NA Intergenic L1ME2z|LINE|L1 55792 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 712-80 chr5 119697980 119698392 + 3 NA Intergenic L1M2|LINE|L1 68627 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 447-261 chr8 64153919 64154143 + 3 NA intron (NR_125826, intron 2 of 4) intron (NR_125826, intron 2 of 4) 214527 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 740-78 chr9 4163727 4164164 + 3 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -11762 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 296-197 chr18 38302226 38302358 + 3 NA Intergenic Intergenic 645157 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 444-88 chr16 74186001 74186181 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 29430 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 426-114 chr18 64492189 64492460 + 3 NA Intergenic Intergenic -232269 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 947-17 chr2 197665663 197666326 + 3 NA intron (NM_144629, intron 1 of 8) L1MA4A|LINE|L1 9593 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 610-103 chr21 26990014 26990341 + 3 NA Intergenic Intergenic -23089 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 346-515 chr9 11461119 11461311 + 3 NA Intergenic Intergenic 848009 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 541-234 chr8 89642114 89642332 + 3 NA Intergenic L1M2|LINE|L1 115488 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 331-63 chr10 81538788 81539042 + 3 NA Intergenic L1ME3A|LINE|L1 -336279 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 498-295 chrX 82526578 82526834 + 3 NA Intergenic L1MA9|LINE|L1 -981584 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 720-48 chr2 205799415 205799730 + 3 NA Intergenic Intergenic 117071 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 402-126 chr18 70588798 70589052 + 3 NA Intergenic L1M3de|LINE|L1 62029 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 427-217 chr5 145202648 145202924 + 3 NA Intergenic MER3|DNA|hAT-Charlie 632556 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 359-314 chr3 40825155 40825317 + 3 NA Intergenic Intergenic 300276 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 689-46 chr2 75236375 75236753 + 3 NA Intergenic L1PA17|LINE|L1 -37044 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 501-50 chr12 34636094 34636263 + 3 NA Intergenic ALR/Alpha|Satellite|centr 613682 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 729-56 chr4 32357872 32358245 + 3 NA Intergenic L1MA9|LINE|L1 7020 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 554-125 chr2 169504399 169504634 + 3 NA exon (NM_152384, exon 12 of 12) exon (NM_152384, exon 12 of 12) -5186 NM_006063 10324 Hs.50550 NM_006063 ENSG00000239474 KLHL41 KBTBD10|Krp1|SARCOSIN kelch like family member 41 protein-coding 336-383 chr3 178275315 178275572 + 3 NA Intergenic Intergenic -143758 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 437-182 chr3 183129426 183129603 + 3 NA intron (NM_014398, intron 5 of 5) HAL1b|LINE|L1 -29927 NR_120639 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 250-210 chr2 78120748 78120880 + 3 NA intron (NR_110287, intron 5 of 5) MER53|DNA|hAT 32084 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 478-220 chr4 129164740 129165037 + 3 NA Intergenic Intergenic 68736 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 469-191 chr4 14252947 14253253 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 141132 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 817-32 chr22 49223436 49224045 + 3 NA Intergenic L1MB2|LINE|L1 319726 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 749-41 chr18 3881826 3882353 + 3 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -3264 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 958-7 chr12 4480425 4480980 + 3 NA Intergenic MIRc|SINE|MIR -35088 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 208-30 chr10 111398970 111399061 + 3 NA Intergenic Intergenic 284724 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 498-265 chr8 48311109 48311364 + 3 NA Intergenic L1MA9|LINE|L1 -240331 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 493-150 chr2 80963457 80963730 + 3 NA Intergenic L1PA13|LINE|L1 503353 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 430-115 chr17 70020513 70020739 + 3 NA Intergenic Intergenic -30645 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 546-185 chr5 25645630 25645993 + 3 NA Intergenic Intergenic 454858 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 386-163 chr2 36472218 36472414 + 3 NA intron (NM_016441, intron 5 of 16) intron (NM_016441, intron 5 of 16) 116538 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 591-123 chr5 13935217 13935512 + 3 NA intron (NM_001369, intron 1 of 78) intron (NM_001369, intron 1 of 78) 9116 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 453-297 chr9 29389700 29389922 + 3 NA Intergenic L1MA9|LINE|L1 -176210 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 288-391 chr7 2965264 2965390 + 3 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 78540 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 439-255 chr6 166982745 166982981 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 15049 NR_037504 100500857 NR_037504 ENSG00000265828 MIR3939 mir-3939 microRNA 3939 ncRNA 302-481 chr9 20056450 20056579 + 3 NA Intergenic Intergenic -269495 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 577-199 chr8 143414194 143414566 + 3 NA Intergenic AluJr|SINE|Alu -3299 NR_126358 104326051 Hs.202140 NR_126358 ENSG00000254338 MAFA-AS1 TCONS_00014882 MAFA antisense RNA 1 ncRNA 627-106 chr6 159022687 159023064 + 3 NA Intergenic L1MEf|LINE|L1 19478 NM_001278733 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 469-152 chr20 31252619 31252855 + 3 NA Intergenic L1MA6|LINE|L1 -4927 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 561-125 chr3 10614543 10614898 + 3 NA intron (NM_001353564, intron 1 of 20) MIRc|SINE|MIR 5241 NM_001353564 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 883-32 chr4 155316088 155316599 + 3 NA Intergenic Intergenic -37873 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 410-264 chr6 86648667 86648860 + 3 NA Intergenic Intergenic -288765 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 543-259 chr9 4075830 4076089 + 3 NA intron (NM_001042413, intron 4 of 10) L1ME2|LINE|L1 76224 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 417-38 chr10 67611670 67611863 + 3 NA intron (NM_001127384, intron 2 of 17) intron (NM_001127384, intron 2 of 17) 53894 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 558-187 chr6 48840017 48840288 + 3 NA Intergenic L1PREC2|LINE|L1 623101 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 404-162 chr2 65473914 65474105 + 3 NA Intergenic MIRb|SINE|MIR -41410 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 609-12 chr10 116758202 116758635 + 3 NA intron (NM_001330164, intron 2 of 12) MIRc|SINE|MIR -15852 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 222-227 chr3 19304505 19304645 + 3 NA intron (NM_144633, intron 3 of 15) L1MEg|LINE|L1 10356 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 316-28 chr1 171976148 171976290 + 3 NA intron (NM_001278252, intron 2 of 14) L1M5|LINE|L1 112027 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 568-164 chr5 125139344 125139688 + 3 NA intron (NR_109882, intron 2 of 5) L2c|LINE|L2 102685 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 437-62 chr13 68127641 68127846 + 3 NA Intergenic Intergenic 755356 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 708-63 chr5 110812240 110812685 + 3 NA Intergenic L1PA16|LINE|L1 73455 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 711-13 chr12 34475866 34476325 + 3 NA Intergenic ALR/Alpha|Satellite|centr 453599 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 389-300 chr5 141292018 141292187 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 11947 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 410-154 chr2 175536484 175536641 + 3 NA Intergenic MLT2B4|LTR|ERVL -354852 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 351-373 chr5 25594242 25594423 + 3 NA Intergenic Intergenic 403379 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 572-129 chr4 120810553 120810936 + 3 NA intron (NM_001300824, intron 7 of 13) intron (NM_001300824, intron 7 of 13) 112122 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 630-11 chr11 4916291 4916627 + 3 NA promoter-TSS (NM_001005238) promoter-TSS (NM_001005238) -796 NM_001005238 81282 Hs.542302 NM_001005238 ENSG00000176893 OR51G2 OR11-28 olfactory receptor family 51 subfamily G member 2 protein-coding 358-207 chr2 66660775 66660914 + 3 NA intron (NR_110156, intron 1 of 5) L1PA13|LINE|L1 42383 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 470-245 chr7 7147722 7147916 + 3 NA Intergenic L2a|LINE|L2 -34796 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 469-160 chr20 56628104 56628431 + 3 NA Intergenic CpG -1039 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 777-41 chr21 28311201 28311749 + 3 NA Intergenic L1M4|LINE|L1 -82808 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 524-102 chr19 22429928 22430200 + 3 NA Intergenic MER4-int|LTR|ERV1 -7718 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 480-77 chr14 58948864 58949127 + 3 NA intron (NR_110547, intron 4 of 5) L1MEc|LINE|L1 120707 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 466-87 chr15 88352795 88352978 + 3 NA Intergenic HAL1|LINE|L1 -96147 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 727-7 chr10 14126445 14126756 + 3 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 52316 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 238-35 chr10 34123987 34124143 + 3 NA intron (NM_001184789, intron 21 of 22) intron (NM_001184789, intron 21 of 22) -351385 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 450-283 chr7 68506923 68507180 + 3 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 486798 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 494-30 chr10 111710786 111711086 + 3 NA Intergenic Intergenic 472829 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 595-147 chr6 150462461 150462707 + 3 NA Intergenic Intergenic 93572 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 591-69 chr2 76666019 76666449 + 3 NA Intergenic L1ME4a|LINE|L1 -319731 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 889-10 chr12 25059732 25060233 + 3 NA intron (NM_001204126, intron 1 of 19) Tigger15a|DNA|TcMar-Tigger 7276 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 616-84 chr2 81122131 81122392 + 3 NA Intergenic L1MB7|LINE|L1 344685 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 396-150 chr2 16370126 16370289 + 3 NA Intergenic L1M5|LINE|L1 295627 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 859-17 chr17 77715837 77716317 + 3 NA Intergenic L1ME1|LINE|L1 12482 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 489-125 chr2 29648003 29648300 + 3 NA intron (NM_004304, intron 3 of 28) L2c|LINE|L2 -172774 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 440-118 chr2 69606029 69606394 + 3 NA intron (NM_014911, intron 2 of 21) L2c|LINE|L2 37528 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 428-255 chr6 65701781 65701978 + 3 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 5346 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 473-277 chr8 101389030 101389325 + 3 NA Intergenic Intergenic 20284 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 558-173 chr5 42300315 42300560 + 3 NA Intergenic Intergenic -123002 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 892-24 chr2 217100456 217101062 + 3 NA Intergenic Intergenic -181974 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 552-124 chr20 54563241 54563546 + 3 NA intron (NM_018431, intron 2 of 7) HAL1ME|LINE|L1 87800 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 1159-9 chr2 156235871 156236683 + 3 NA intron (NR_110250, intron 1 of 3) AluSx|SINE|Alu 18654 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 885-15 chr3 140998041 140998489 + 3 NA Intergenic L1M5|LINE|L1 -53082 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 592-150 chr6 41613902 41614165 + 3 NA Intergenic HAL1|LINE|L1 15310 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 383-185 chr2 53109356 53109514 + 3 NA Intergenic Intergenic -406820 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 515-228 chr6 15881554 15881791 + 3 NA Intergenic Intergenic -218614 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 414-366 chrX 122925609 122925886 + 3 NA Intergenic L1MA5|LINE|L1 -258496 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 567-116 chr3 82959322 82959603 + 3 NA Intergenic Intergenic 973320 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 496-157 chr20 712896 713087 + 3 NA Intergenic AluSg|SINE|Alu -37189 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 447-149 chr2 239709836 239710044 + 3 NA Intergenic MLT2C1|LTR|ERVL -52920 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 558-56 chr14 78117390 78117650 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -52853 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 628-79 chr20 19461371 19461706 + 3 NA intron (NM_020689, intron 2 of 16) AluSz|SINE|Alu -176942 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 428-330 chrX 87564630 87564882 + 3 NA intron (NM_057162, intron 1 of 10) L1MB5|LINE|L1 46954 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 660-40 chr2 70971025 70971482 + 3 NA Intergenic L1MB8|LINE|L1 -7192 NM_001369683 79998 Hs.512744 NM_024933 ENSG00000144031 ANKRD53 - ankyrin repeat domain 53 protein-coding 739-38 chr2 107630802 107631203 + 3 NA Intergenic AluSx|SINE|Alu 101583 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 215-228 chr4 87239832 87239938 + 3 NA Intergenic Intergenic -19267 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 1076-22 chr7 53215223 53215818 + 3 NA Intergenic Intergenic 179887 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 816-16 chr17 62862282 62862702 + 3 NA Intergenic AluJo|SINE|Alu 53990 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 796-38 chr4 62538614 62539047 + 3 NA Intergenic L1MC1|LINE|L1 -377065 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 329-198 chr16 7635513 7635707 + 3 NA intron (NM_145893, intron 8 of 13) intron (NM_145893, intron 8 of 13) 302765 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 1280 chr18 1048746 1049441 + 3 NA Intergenic L1MA6|LINE|L1 -121100 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 555-118 chr21 27279239 27279507 + 3 NA Intergenic L1ME3Cz|LINE|L1 -312285 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 484-249 chr7 43106779 43107000 + 3 NA Intergenic Intergenic -5758 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 490-119 chr18 47792471 47792704 + 3 NA Intergenic L1ME3Cz|LINE|L1 138072 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 301-106 chr13 79120513 79120656 + 3 NA Intergenic Intergenic -280534 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 527-164 chr22 39192597 39193000 + 3 NA Intergenic L1MD1|LINE|L1 -40118 NM_001346743 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 252-372 chr6 73073593 73073768 + 3 NA intron (NM_001160132, intron 3 of 13) intron (NM_001160132, intron 3 of 13) 69834 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 467-194 chr3 181817691 181817871 + 3 NA Intergenic Intergenic 105856 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 485-318 chrX 43348163 43348374 + 3 NA Intergenic L1PA17|LINE|L1 171274 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 691-51 chr3 68757617 68758124 + 3 NA intron (NM_001005527, intron 3 of 5) MER104|DNA|TcMar-Tc2 174677 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 847-12 chr11 133189479 133189812 + 3 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -245877 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 512-193 chr4 72498537 72498802 + 3 NA intron (NM_014243, intron 3 of 21) (CA)n|Simple_repeat|Simple_repeat 70552 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 733-11 chr11 94894451 94894730 + 3 NA Intergenic L1MA5|LINE|L1 78966 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 716-47 chr3 30027762 30028172 + 3 NA Intergenic MER39|LTR|ERV1 -93811 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 559-100 chr2 146150076 146150305 + 3 NA Intergenic Intergenic -436867 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 317-373 chr5 9304205 9304430 + 3 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -207016 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 576-141 chr5 119134559 119134872 + 3 NA intron (NM_001290321, intron 13 of 43) intron (NM_001290321, intron 13 of 43) -19922 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 439-203 chr4 38404341 38404559 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 37536 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 374-302 chr5 24373349 24373498 + 3 NA Intergenic Intergenic 271555 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 918-23 chr6 45132652 45133202 + 3 NA intron (NM_001350325, intron 2 of 10) MIRb|SINE|MIR 64843 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 597-5 chr1 60203404 60203766 + 3 NA Intergenic Intergenic -129815 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 390-293 chr5 56449763 56450028 + 3 NA Intergenic Intergenic 31874 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 259-14 chr1 115272001 115272151 + 3 NA Intergenic L2b|LINE|L2 -10958 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 750-71 chr8 131578499 131578988 + 3 NA Intergenic Intergenic -325350 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 834-8 chr12 93866303 93866685 + 3 NA intron (NR_135147, intron 3 of 3) HAL1|LINE|L1 77112 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 383-317 chr5 58714416 58714664 + 3 NA intron (NM_138453, intron 2 of 4) L1MEd|LINE|L1 131465 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 407-206 chr3 115367785 115368095 + 3 NA Intergenic L1MA9|LINE|L1 -220652 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 411-78 chr13 25988739 25988984 + 3 NA intron (NM_016529, intron 35 of 36) intron (NM_016529, intron 35 of 36) 62199 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 445-167 chr22 48665499 48665849 + 3 NA intron (NM_001082967, intron 2 of 3) intron (NM_001082967, intron 2 of 3) 89334 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 817-44 chr5 124019462 124019808 + 3 NA Intergenic L1MEg|LINE|L1 418885 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 247-50 chr11 7329444 7329562 + 3 NA intron (NM_175733, intron 3 of 6) intron (NM_175733, intron 3 of 6) 77599 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 473-260 chr7 47311460 47311659 + 3 NA intron (NM_022748, intron 20 of 30) L1MEg|LINE|L1 153244 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 700-52 chr2 188838999 188839420 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -49086 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 436-278 chr7 20205941 20206140 + 3 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 11344 NM_182762 346389 Hs.598388 NM_182762 ENSG00000183742 MACC1 7A5|SH3BP4L MET transcriptional regulator MACC1 protein-coding 308-87 chr11 89508357 89508550 + 3 NA intron (NM_001143837, intron 2 of 20) intron (NM_001143837, intron 2 of 20) -16234 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 404-108 chr14 87707850 87708034 + 3 NA Intergenic MIRb|SINE|MIR -52648 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 491-285 chrX 63949539 63949843 + 3 NA Intergenic L1MB3|LINE|L1 -163604 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 405-256 chr5 115861004 115861197 + 3 NA intron (NM_001002924, intron 2 of 6) L2c|LINE|L2 18613 NR_157087 1176 Hs.406191 NM_001284 ENSG00000177879 AP3S1 CLAPS3|Sigma3A adaptor related protein complex 3 subunit sigma 1 protein-coding 453-203 chr5 31828870 31829057 + 3 NA intron (NM_178140, intron 2 of 24) L1MB8|LINE|L1 107196 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 558-42 chr12 43629909 43630186 + 3 NA Intergenic L1MEf|LINE|L1 -77844 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 664-116 chr8 89661989 89662241 + 3 NA Intergenic LTR78B|LTR|ERV1 95596 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 784-40 chr3 187854442 187854844 + 3 NA Intergenic Intergenic -109175 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 456-239 chr5 3423123 3423327 + 3 NA intron (NR_033898, intron 2 of 4) L1M3|LINE|L1 -29591 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 693-70 chr3 192000537 192000827 + 3 NA Intergenic AluSz|SINE|Alu -237948 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 908-16 chr2 15246102 15246606 + 3 NA intron (NR_052013, intron 44 of 50) L2c|LINE|L2 314980 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 872-45 chr7 37803047 37803742 + 3 NA Intergenic L1MCa|LINE|L1 -45203 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 450-6 chr1 90155339 90155590 + 3 NA Intergenic L1PB1|LINE|L1 160354 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 320-38 chr1 212418572 212418733 + 3 NA Intergenic LTR8A|LTR|ERV1 -3751 NM_001198862 55248 Hs.445386 NM_018252 ENSG00000065600 PACC1 C1orf75|PAC|TMEM206 proton activated chloride channel 1 protein-coding 766-41 chr20 12768526 12769021 + 3 NA Intergenic MER63D|DNA|hAT-Blackjack 168190 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 562-3 chr1 80618599 80618931 + 3 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) -22522 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 571-53 chr15 93685302 93685615 + 3 NA Intergenic L1PA16|LINE|L1 -171102 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 563-109 chr20 62566802 62566996 + 3 NA intron (NM_001302812, intron 4 of 4) intron (NM_001302812, intron 4 of 4) 1987 NR_029676 406923 NR_029676 ENSG00000284508 MIR133A2 MIRN133A2|mir-133a-2 microRNA 133a-2 ncRNA 433-172 chr3 68707510 68707796 + 3 NA Intergenic AluJo|SINE|Alu 207016 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 840-17 chr16 48704042 48704619 + 3 NA Intergenic L1ME4b|LINE|L1 -94150 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 399-238 chr5 13677305 13677485 + 3 NA Intergenic Intergenic 267085 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 527-238 chr7 5434619 5434893 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -5829 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 272-76 chr11 83577642 83577793 + 3 NA intron (NM_001142699, intron 19 of 27) (TA)n|Simple_repeat|Simple_repeat 104708 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 618-47 chr18 6171054 6171431 + 3 NA intron (NM_001365769, intron 13 of 16) intron (NM_001365769, intron 13 of 16) -85502 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 789-28 chr21 14712895 14713380 + 3 NA Intergenic L1M4|LINE|L1 -70030 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 518-96 chr15 91433628 91433913 + 3 NA Intergenic L1ME1|LINE|L1 -29569 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 321-350 chr22 34232620 34232790 + 3 NA Intergenic L1MA4|LINE|L1 -309817 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 317-106 chr12 30783949 30784174 + 3 NA Intergenic Intergenic -11620 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 283-384 chr5 165653980 165654138 + 3 NA Intergenic Intergenic 1183780 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 448-125 chr2 146097491 146097760 + 3 NA Intergenic Intergenic -489432 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 725-42 chr3 177880940 177881293 + 3 NA intron (NR_110826, intron 1 of 2) L1ME4a|LINE|L1 64251 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 368-496 chrX 107286668 107286856 + 3 NA Intergenic Intergenic 80130 NM_001169154 139212 Hs.128836 NM_173494 ENSG00000080572 PIH1D3 CILD36|CXorf41|DNAAF6|NYSAR97|TWISTER PIH1 domain containing 3 protein-coding 576-18 chr10 81086752 81087127 + 3 NA Intergenic L1MC1|LINE|L1 437142 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 485-233 chr5 117458246 117458505 + 3 NA intron (NR_046089, intron 2 of 5) L2a|LINE|L2 42863 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 491-140 chr2 240488858 240489109 + 3 NA intron (NM_017844, intron 11 of 13) L1MA4A|LINE|L1 -32283 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 681-7 chr10 105034756 105035208 + 3 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -368766 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 698-86 chr8 135720306 135720603 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 262998 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 611-62 chr18 629669 629948 + 3 NA intron (NM_199167, intron 5 of 8) intron (NM_199167, intron 5 of 8) 13108 NM_199167 27098 Hs.732341 NM_014410 ENSG00000079101 CLUL1 RA337M clusterin like 1 protein-coding 433-169 chr3 51580244 51580409 + 3 NA intron (NM_001322253, intron 3 of 23) MER21C|LTR|ERVL 38737 NM_001322257 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 516-258 chr8 127309301 127309524 + 3 NA intron (NR_117100, intron 5 of 5) MIRb|SINE|MIR 64775 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 651-21 chr11 5312083 5312419 + 3 NA Intergenic L2c|LINE|L2 -10305 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 579-38 chr14 72251706 72252021 + 3 NA intron (NM_001370288, intron 2 of 16) L1PA16|LINE|L1 -264957 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 472-99 chr15 39297745 39298023 + 3 NA Intergenic Intergenic 47215 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 389-174 chr2 77696286 77696486 + 3 NA Intergenic Intergenic -173953 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 377-155 chr17 31645899 31646130 + 3 NA Intergenic L1MC4|LINE|L1 70603 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 472-269 chr6 51275635 51275849 + 3 NA Intergenic Intergenic -346128 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 491-167 chr3 56717630 56717828 + 3 NA Intergenic L1MEc|LINE|L1 -34464 NM_001365636 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 334-453 chr6 37542575 37542700 + 3 NA Intergenic MIR|SINE|MIR 12785 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 531-34 chr11 42927249 42927520 + 3 NA Intergenic Intergenic 341985 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 489-154 chr2 197760557 197760849 + 3 NA intron (NM_001284361, intron 7 of 11) L1MA5A|LINE|L1 24616 NM_001284362 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 371-171 chr2 82711185 82711316 + 3 NA Intergenic LTR82B|LTR|ERVL -145553 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 375-200 chr2 31713883 31714051 + 3 NA Intergenic L1M1|LINE|L1 90013 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 435-163 chr4 32821814 32822049 + 3 NA Intergenic L1MEc|LINE|L1 470893 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 282-10 chr1 97080532 97080724 + 3 NA intron (NM_000110, intron 22 of 22) intron (NM_000110, intron 22 of 22) -15295 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 520-337 chrX 116885210 116885437 + 3 NA Intergenic Intergenic -67463 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 518-37 chr10 90242835 90243104 + 3 NA Intergenic L1MEi|LINE|L1 -285596 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 752-70 chr8 103260339 103260772 + 3 NA intron (NR_148216, intron 1 of 1) L1M4|LINE|L1 -37939 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 923-29 chr9 89090815 89091182 + 3 NA intron (NM_016848, intron 2 of 11) intron (NM_016848, intron 2 of 11) 87820 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 500-288 chr8 63494153 63494350 + 3 NA Intergenic L1MC4|LINE|L1 28402 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 449-273 chr8 88431101 88431374 + 3 NA Intergenic L1M2|LINE|L1 -103754 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 363-473 chr9 71221232 71221468 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -99729 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 577-150 chr5 62287357 62287569 + 3 NA Intergenic Intergenic -18699 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 565-151 chr5 141353539 141353742 + 3 NA TTS (NM_032095) TTS (NM_032095) -1381 NM_018917 56111 Hs.368160 NM_018917 ENSG00000262576 PCDHGA4 PCDH-GAMMA-A4 protocadherin gamma subfamily A, 4 protein-coding 1083-3 chr12 118552181 118552891 + 3 NA Intergenic MER20|DNA|hAT-Charlie 175981 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 817-50 chr7 88870617 88871166 + 3 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -75154 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 703-11 chr10 52139499 52139945 + 3 NA intron (NM_001098512, intron 8 of 17) MamTip3|DNA|hAT-Tip100 174406 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 477-99 chr15 24926367 24926634 + 3 NA intron (NM_001349456, intron 4 of 12) intron (NM_001349456, intron 4 of 12) -28393 NM_001349463 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 451-65 chr14 58526751 58527016 + 3 NA intron (NM_001329945, intron 29 of 29) intron (NM_001329945, intron 29 of 29) 87202 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 636-160 chr9 82100374 82100735 + 3 NA Intergenic L1PA16|LINE|L1 111782 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 457-148 chr21 34765041 34765295 + 3 NA intron (NR_038885, intron 1 of 2) intron (NR_038885, intron 1 of 2) 19343 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 554-106 chr19 33671272 33671552 + 3 NA intron (NM_001127895, intron 2 of 4) L2a|LINE|L2 -13116 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 641-115 chr8 131295253 131295553 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -254494 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 511-131 chr2 148594335 148594608 + 3 NA Intergenic Intergenic -50280 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 260-283 chr3 113465982 113466119 + 3 NA intron (NM_001331078, intron 10 of 17) L1ME4b|LINE|L1 -24536 NM_018338 55779 Hs.584936 NM_018338 ENSG00000206530 CFAP44 SPGF20|WDR52 cilia and flagella associated protein 44 protein-coding 401-92 chr14 61306450 61306646 + 3 NA Intergenic L1MEf|LINE|L1 -14895 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 541-17 chr10 43776699 43777042 + 3 NA TTS (NR_134484) TTS (NR_134484) 1955 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 747-47 chr3 179252220 179252650 + 3 NA promoter-TSS (NM_171830) promoter-TSS (NM_171830) -578 NM_171830 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 731-67 chr7 31026289 31026615 + 3 NA Intergenic Intergenic -25856 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 666-80 chr3 99799066 99799479 + 3 NA TTS (NM_020351) TTS (NM_020351) -18590 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 702-10 chr10 83460717 83461062 + 3 NA Intergenic Intergenic 216200 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 311-56 chr10 71170953 71171187 + 3 NA Intergenic Intergenic -41500 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 452-213 chr5 67747659 67747987 + 3 NA Intergenic L1MCa|LINE|L1 -45390 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 627-110 chr7 40922755 40923243 + 3 NA Intergenic Intergenic 56940 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 541-226 chr8 12795564 12795891 + 3 NA intron (NR_102423, intron 1 of 1) intron (NR_102423, intron 1 of 1) 1487 NR_102423 101409254 Hs.571476 NR_102423 ENSG00000255494 LINC00681 - long intergenic non-protein coding RNA 681 ncRNA 328-585 chr8 131575488 131575630 + 3 NA Intergenic L1PREC2|LINE|L1 -328534 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 234-322 chr5 131878016 131878152 + 3 NA intron (NM_001303622, intron 9 of 12) Tigger7|DNA|TcMar-Tigger 67579 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 425-149 chr2 155793179 155793376 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger 461654 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 425-223 chr5 17175712 17176029 + 3 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -19878 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 629-14 chr1 231791448 231791711 + 3 NA intron (NM_001164547, intron 6 of 7) MARNA|DNA|TcMar-Mariner 26938 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 522-135 chr2 98220906 98221102 + 3 NA intron (NR_144297, intron 14 of 18) L1PA8|LINE|L1 71471 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 520-50 chr11 50428794 50429095 + 3 NA Intergenic ALR/Alpha|Satellite|centr 19797 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 498-243 chr6 170203198 170203425 + 3 NA Intergenic L2a|LINE|L2 42669 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 612-93 chr3 118409342 118409681 + 3 NA Intergenic L1MB2|LINE|L1 -232257 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 416-222 chr3 62553737 62554047 + 3 NA intron (NM_003716, intron 10 of 29) intron (NM_003716, intron 10 of 29) -180342 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 617-12 chr10 42309362 42309788 + 3 NA Intergenic Intergenic 58470 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 468-214 chr3 193893911 193894148 + 3 NA Intergenic Intergenic -50020 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 457-20 chr1 219489454 219489635 + 3 NA intron (NR_135822, intron 1 of 3) intron (NR_135822, intron 1 of 3) 67780 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 703-55 chr22 22994216 22994596 + 3 NA Intergenic Intergenic -76113 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 680-52 chr2 35992220 35992684 + 3 NA Intergenic MIR3|SINE|MIR 363118 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 486-246 chr5 120340477 120340728 + 3 NA Intergenic Intergenic -123676 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 494-158 chr21 31937582 31937917 + 3 NA intron (NM_014586, intron 2 of 10) Kanga2_a|DNA|TcMar-Tc2 64729 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 413-136 chr2 65863421 65863730 + 3 NA Intergenic Intergenic -430976 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 489-219 chr5 158574772 158575095 + 3 NA Intergenic Intergenic -165160 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 812-8 chr10 64725880 64726311 + 3 NA Intergenic MER44D|DNA|TcMar-Tigger -99433 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 816-24 chr2 59587630 59587926 + 3 NA Intergenic Intergenic 370070 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 349-286 chr20 1682321 1682498 + 3 NA Intergenic L1MA8|LINE|L1 -24630 NM_080816 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 434-65 chr12 108217809 108218047 + 3 NA intron (NM_001304447, intron 5 of 9) intron (NM_001304447, intron 5 of 9) 86142 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 477-275 chr8 70523826 70524124 + 3 NA Intergenic L2b|LINE|L2 52841 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 337-168 chr15 34744626 34744832 + 3 NA Intergenic Intergenic 10269 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 315-427 chr6 140404480 140404604 + 3 NA Intergenic L1MA9|LINE|L1 199290 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 403-48 chr11 31274259 31274539 + 3 NA intron (NM_181807, intron 7 of 8) L2b|LINE|L2 95340 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 556-84 chr17 70582257 70582585 + 3 NA Intergenic Intergenic 412886 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 1021-11 chr4 82768873 82769584 + 3 NA intron (NM_001037582, intron 1 of 4) MIR3|SINE|MIR -15798 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 567-201 chr9 16881617 16881920 + 3 NA Intergenic Intergenic -11098 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 612-147 chr8 135983107 135983387 + 3 NA Intergenic Intergenic 525791 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 728-82 chr6 118639589 118640060 + 3 NA intron (NM_001178035, intron 2 of 13) intron (NM_001178035, intron 2 of 13) 11767 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 389-271 chr4 114461582 114461726 + 3 NA Intergenic Intergenic -136748 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 405-244 chr5 42229932 42230167 + 3 NA Intergenic L1PREC2|LINE|L1 -54704 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 498-269 chr8 64924925 64925132 + 3 NA Intergenic Intergenic -126291 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 716-12 chr10 52425359 52425707 + 3 NA Intergenic LTR8|LTR|ERV1 29739 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 637-105 chr7 7054696 7055076 + 3 NA Intergenic Intergenic 12159 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 486-2 chr1 38396933 38397245 + 3 NA Intergenic L1M1|LINE|L1 -78107 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 564-194 chr7 131238649 131239017 + 3 NA intron (NM_001145354, intron 2 of 18) MLT1J2|LTR|ERVL-MaLR 88946 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 433-232 chr5 140756891 140757091 + 3 NA Intergenic Intergenic -29145 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 787-24 chr20 15998103 15998448 + 3 NA intron (NM_001351663, intron 15 of 17) L1MA9|LINE|L1 -12393 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 1108-6 chr12 40086953 40087664 + 3 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 18773 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 658-18 chr10 81328214 81328644 + 3 NA Intergenic Intergenic -546765 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 658-119 chr8 51572342 51572726 + 3 NA intron (NM_144651, intron 3 of 22) L1MB4|LINE|L1 236911 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 283-374 chr5 105022802 105022912 + 3 NA Intergenic Intergenic -76617 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 249-312 chr4 181061401 181061544 + 3 NA Intergenic Intergenic 97677 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 721-61 chr4 30872996 30873324 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 152791 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 699-110 chrX 76956177 76956619 + 3 NA intron (NR_110403, intron 1 of 3) L1PA15|LINE|L1 -37038 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 586-107 chr3 182056366 182056726 + 3 NA Intergenic L2a|LINE|L2 104182 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 452-193 chr4 99443517 99443782 + 3 NA Intergenic Intergenic -8139 NM_000673 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 707-85 chr5 127695205 127695749 + 3 NA Intergenic Intergenic -7912 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 569-64 chr15 62157081 62157331 + 3 NA Intergenic Intergenic 8079 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 584-119 chr4 97927982 97928225 + 3 NA intron (NM_174952, intron 8 of 10) L1MEd|LINE|L1 215373 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 576-56 chr15 26646610 26646829 + 3 NA intron (NM_001278631, intron 3 of 9) L1MB7|LINE|L1 -17629 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 734-43 chr21 25366323 25366751 + 3 NA Intergenic Intergenic 65164 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 503-73 chr12 68862172 68862359 + 3 NA intron (NM_001874, intron 7 of 8) AluSx1|SINE|Alu 53241 NM_001278462 4193 Hs.484551 NM_002392 ENSG00000135679 MDM2 ACTFS|HDMX|hdm2 MDM2 proto-oncogene protein-coding 398-105 chr14 61885596 61885753 + 3 NA intron (NM_001367661, intron 2 of 8) Tigger1|DNA|TcMar-Tigger -42021 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 529-158 chr4 51917878 51918199 + 3 NA Intergenic Intergenic 74459 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 350-156 chr15 92320362 92320508 + 3 NA Intergenic Intergenic -73446 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 421-276 chr7 26069423 26069586 + 3 NA Intergenic Intergenic -82694 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 1066-2 chr1 227652030 227652542 + 3 NA intron (NM_001367909, intron 3 of 3) L1MA9|LINE|L1 45421 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 628-50 chr15 59037994 59038387 + 3 NA intron (NM_001270529, intron 2 of 13) Kanga2_a|DNA|TcMar-Tc2 50044 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 542-21 chr10 56454246 56454707 + 3 NA Intergenic HAL1|LINE|L1 -93203 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 501-55 chr12 91124138 91124341 + 3 NA Intergenic Intergenic -12745 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 611-47 chr15 97506477 97506781 + 3 NA intron (NR_120324, intron 2 of 4) Charlie10|DNA|hAT-Charlie 15182 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 907-13 chr2 19152077 19152583 + 3 NA Intergenic MER4A|LTR|ERV1 -125359 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 465-191 chr3 164220404 164220658 + 3 NA Intergenic Intergenic -48975 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 560-19 chr10 64965008 64965286 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -40629 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 401-235 chr4 94177768 94177936 + 3 NA intron (NR_125922, intron 1 of 8) MER92-int|LTR|ERV1 29704 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 285-43 chr10 84495901 84496024 + 3 NA intron (NM_001284240, intron 9 of 9) L1MDa|LINE|L1 70793 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 707-8 chr1 219072711 219072988 + 3 NA intron (NR_031644, intron 6 of 6) L1MB7|LINE|L1 100939 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 1461 chr15 60045679 60046284 + 3 NA Intergenic L2a|LINE|L2 41670 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 559-181 chr8 54405424 54405678 + 3 NA Intergenic L1MB8|LINE|L1 -52384 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 377-199 chr2 56813647 56813786 + 3 NA Intergenic L1MC1|LINE|L1 -627946 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 374-140 chr17 18145569 18145723 + 3 NA intron (NM_016239, intron 28 of 64) AluJb|SINE|Alu 36890 NM_016239 51168 Hs.462390 NM_016239 ENSG00000091536 MYO15A DFNB3|MYO15 myosin XVA protein-coding 751-80 chr8 135636984 135637508 + 3 NA intron (NM_006558, intron 7 of 8) intron (NM_006558, intron 7 of 8) 179790 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 573-101 chr2 228970069 228970418 + 3 NA Intergenic L2|LINE|L2 261849 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 364-257 chr22 22099557 22099753 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -55721 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 820-13 chr12 41106289 41106814 + 3 NA Intergenic L2a|LINE|L2 -81769 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 448-61 chr12 41239274 41239541 + 3 NA intron (NM_001164595, intron 3 of 9) L1PA11|LINE|L1 51087 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 711-51 chr4 38657278 38657762 + 3 NA intron (NR_026804, intron 1 of 7) intron (NR_026804, intron 1 of 7) -6679 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 211-239 chr5 84125513 84125637 + 3 NA intron (NM_001278642, intron 4 of 9) intron (NM_001278642, intron 4 of 9) 259292 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 1219-4 chr10 65163914 65164706 + 3 NA Intergenic L1ME2|LINE|L1 -239792 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 501-46 chr12 16291816 16292042 + 3 NA Intergenic Intergenic -14244 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 676-33 chr14 62597236 62597611 + 3 NA Intergenic L1MA8|LINE|L1 448035 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 458-163 chr22 33788280 33788533 + 3 NA intron (NM_001362953, intron 1 of 14) THE1B|LTR|ERVL-MaLR 63420 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 347-36 chr1 234580362 234580522 + 3 NA Intergenic Intergenic 29083 NM_001077397 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 CVID14 interferon regulatory factor 2 binding protein 2 protein-coding 593-167 chr9 133503500 133503848 + 3 NA Intergenic L1MEd|LINE|L1 21285 NM_001080483 389827 NM_001080483 ENSG00000187616 MYMK MYOMAKER|TMEM226|TMEM8C myomaker, myoblast fusion factor protein-coding 563-94 chr2 158664596 158664956 + 3 NA intron (NM_001005476, intron 15 of 20) MIR|SINE|MIR 70226 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 350-168 chr16 63478841 63479032 + 3 NA Intergenic Intergenic -1442498 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 799-20 chr16 76834343 76834972 + 3 NA Intergenic Intergenic -34279 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 409-194 chr3 11992266 11992450 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -12002 NM_003178 6854 Hs.445503 NM_003178 ENSG00000157152 SYN2 SYNII synapsin II protein-coding 562-225 chr9 18126324 18126644 + 3 NA Intergenic L2c|LINE|L2 -347669 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 414-314 chr7 110224192 110224441 + 3 NA Intergenic Intergenic -264103 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 422-305 chr8 136163949 136164189 + 3 NA Intergenic Intergenic -366729 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 384-392 chr9 25618164 25618328 + 3 NA Intergenic Intergenic 60612 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 672-54 chr2 38831262 38831571 + 3 NA intron (NM_001329963, intron 13 of 23) AluSq10|SINE|Alu 44518 NM_198963 90957 Hs.468226 NM_198963 ENSG00000163214 DHX57 DDX57 DExH-box helicase 57 protein-coding 634-154 chr8 125659927 125660217 + 3 NA Intergenic Intergenic 227863 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 470-40 chr11 100229571 100229847 + 3 NA intron (NM_001243270, intron 15 of 23) intron (NM_001243270, intron 15 of 23) -457579 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 491-82 chr16 52305664 52305843 + 3 NA Intergenic L1ME3G|LINE|L1 47189 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 623-58 chr2 53083460 53083836 + 3 NA Intergenic MLT2C1|LTR|ERVL -381033 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 498-78 chr14 33823356 33823631 + 3 NA Intergenic L1M1|LINE|L1 114556 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 389-294 chr5 117714732 117714924 + 3 NA Intergenic L1MC2|LINE|L1 -15533 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 494-282 chr8 52308186 52308355 + 3 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -53778 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 797-32 chr3 95382064 95382461 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 300931 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 407-109 chr17 53175867 53176051 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger 190454 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 673-71 chr21 23129584 23129853 + 3 NA Intergenic Intergenic 50434 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 723-57 chr5 18987849 18988260 + 3 NA Intergenic Intergenic 898218 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 428-326 chrX 10929431 10929586 + 3 NA Intergenic Intergenic -95825 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 587-163 chr8 69244617 69244958 + 3 NA Intergenic L1MEg|LINE|L1 -140597 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 469-150 chr20 12001335 12001631 + 3 NA Intergenic Intergenic 83590 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 825-39 chr4 101802372 101802998 + 3 NA intron (NM_001127507, intron 1 of 15) MIR|SINE|MIR -11157 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 577-93 chr2 80542304 80542636 + 3 NA intron (NM_001282599, intron 3 of 11) L1MC5|LINE|L1 229091 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 498-132 chr2 123584391 123584572 + 3 NA Intergenic MIR|SINE|MIR 440693 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 1215-4 chr19 29389551 29390202 + 3 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) 135876 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 319-7 chr1 66822067 66822202 + 3 NA intron (NM_024763, intron 16 of 16) MIRb|SINE|MIR -20875 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 935-4 chr1 198797889 198798312 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 60882 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 724-21 chr16 49394679 49395063 + 3 NA intron (NM_144602, intron 3 of 4) AluJo|SINE|Alu 21067 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 1153-10 chr2 103622456 103623182 + 3 NA Intergenic L1PA16|LINE|L1 -638390 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 338-327 chr3 40246716 40246896 + 3 NA intron (NM_001284424, intron 12 of 15) intron (NM_001284424, intron 12 of 15) 62892 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 377-99 chr12 119958490 119958661 + 3 NA Intergenic AluSz6|SINE|Alu -30661 NM_001367886 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 431-16 chr1 85845882 85846077 + 3 NA intron (NM_152890, intron 39 of 59) L1ME4b|LINE|L1 -137546 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 792-41 chr4 42973594 42974108 + 3 NA intron (NM_001080476, intron 2 of 3) MIRb|SINE|MIR 80585 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 340-231 chr19 58115330 58115531 + 3 NA intron (NR_027135, intron 1 of 1) L1ME4a|LINE|L1 2996 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 493-294 chr8 50556691 50556942 + 3 NA intron (NR_135795, intron 12 of 18) intron (NR_135795, intron 12 of 18) 392685 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 591-97 chr3 44581891 44582221 + 3 NA intron (NM_001288592, intron 5 of 5) intron (NM_001288592, intron 5 of 5) -2908 NM_173658 285349 Hs.733134 NM_173658 ENSG00000144792 ZNF660 - zinc finger protein 660 protein-coding 946 chr11 43405722 43406222 + 3 NA intron (NM_001307943, intron 13 of 19) intron (NM_001307943, intron 13 of 19) 47052 NM_018259 55761 Hs.191186 NM_018259 ENSG00000052841 TTC17 - tetratricopeptide repeat domain 17 protein-coding 552-192 chr6 156025897 156026266 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 79284 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 1172-3 chr2 65674683 65675294 + 3 NA Intergenic L1MEg|LINE|L1 -242389 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 573-86 chr19 9452160 9452429 + 3 NA Intergenic L1PA16|LINE|L1 -16716 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 424-279 chr8 103484785 103485030 + 3 NA intron (NR_145700, intron 2 of 2) intron (NR_145700, intron 2 of 2) 14324 NR_145704 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 173-149 chrM 11756 11841 + 3 NA Intergenic Intergenic -4284 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 842-34 chr4 61124532 61124999 + 3 NA Intergenic L1MCa|LINE|L1 -18891 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 478-279 chr7 113991615 113991889 + 3 NA Intergenic L1MA3|LINE|L1 -72743 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 519-247 chr9 10491315 10491596 + 3 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 121547 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 388-59 chr11 38037666 38037822 + 3 NA Intergenic Intergenic 99143 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 653-58 chr19 29042212 29042569 + 3 NA Intergenic AluJo|SINE|Alu 39835 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 345-32 chr1 188952331 188952531 + 3 NA Intergenic L1MDb|LINE|L1 1508803 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 551-20 chr10 62140112 62140386 + 3 NA Intergenic L1ME3|LINE|L1 90892 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 587-11 chr1 232584452 232584732 + 3 NA Intergenic MER39B|LTR|ERV1 -68984 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 656-61 chr2 116457099 116457471 + 3 NA Intergenic L1PBa|LINE|L1 1113470 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 400-169 chr2 79646969 79647172 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 2289 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 283-88 chr11 114962017 114962203 + 3 NA Intergenic AluSx|SINE|Alu 283583 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 1101-10 chr3 137271502 137272105 + 3 NA Intergenic L2c|LINE|L2 313820 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 677-56 chr3 18577322 18577810 + 3 NA Intergenic Intergenic -131974 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 490-243 chr6 78746472 78746739 + 3 NA Intergenic L1MB7|LINE|L1 -120946 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 1006-2 chr1 229975420 229976188 + 3 NA Intergenic L2-1_AMi|LINE|L2 -26913 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 463-252 chr6 51091001 51091194 + 3 NA Intergenic Intergenic 272226 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 596-118 chr3 4106844 4107231 + 3 NA Intergenic Intergenic -196267 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 458-161 chr22 24927088 24927249 + 3 NA TTS (NM_133454) TTS (NM_133454) 19527 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 464-167 chr3 110112670 110112892 + 3 NA Intergenic Intergenic 509953 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 378-331 chr5 15395276 15395433 + 3 NA Intergenic Intergenic -104826 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 422-316 chrX 66153822 66153993 + 3 NA Intergenic L1MA7|LINE|L1 -8764 NM_138737 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 752-74 chr8 120557873 120558258 + 3 NA intron (NM_021021, intron 4 of 6) intron (NM_021021, intron 4 of 6) 112646 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 298-159 chr17 7776359 7776557 + 3 NA intron (NM_020877, intron 31 of 85) AluSz|SINE|Alu 22138 NR_002778 118432 Hs.658086 NR_002778 ENSG00000240480 RPL29P2 RPL29_10_1510 ribosomal protein L29 pseudogene 2 pseudo 1360 chr10 97943102 97943924 + 3 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) -67616 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 696-42 chr15 53747810 53748203 + 3 NA intron (NR_102334, intron 1 of 19) intron (NR_102334, intron 1 of 19) 11657 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 358-420 chr6 159418829 159418984 + 3 NA Intergenic L1ME2z|LINE|L1 35375 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 559-201 chr9 89646345 89646689 + 3 NA intron (NR_024280, intron 1 of 5) intron (NR_024280, intron 1 of 5) 6734 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 1076-21 chr5 46259940 46260610 + 3 NA Intergenic ALR/Alpha|Satellite|centr -563895 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 232-24 chr10 1050159 1050272 + 3 NA promoter-TSS (NM_004508) promoter-TSS (NM_004508) -849 NM_004508 3422 Hs.283652 NM_004508 ENSG00000067064 IDI1 IPP1|IPPI1 isopentenyl-diphosphate delta isomerase 1 protein-coding 571-160 chr7 145399287 145399489 + 3 NA Intergenic Intergenic -563335 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 791-3 chr1 106118245 106118708 + 3 NA Intergenic MER41-int|LTR|ERV1 -90223 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 581-51 chr16 64269701 64269959 + 3 NA Intergenic L1M4c|LINE|L1 852233 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 510-286 chr8 138530996 138531179 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -33357 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 555-16 chr10 31171621 31171940 + 3 NA Intergenic Intergenic -16103 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 648-16 chr10 91657649 91657884 + 3 NA Intergenic L1ME1|LINE|L1 -24695 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 399-84 chr14 45630952 45631132 + 3 NA Intergenic L1MC3|LINE|L1 84560 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 473-127 chr2 33965782 33966045 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -101313 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 525-221 chr6 64183512 64183861 + 3 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 376850 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 910-10 chr12 11940103 11940647 + 3 NA Intergenic L1MC5a|LINE|L1 -109486 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 429-6 chr1 73245510 73245687 + 3 NA Intergenic L1PA16|LINE|L1 -60572 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 505-103 chr15 97352071 97352471 + 3 NA Intergenic Intergenic 169540 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 735-26 chr15 69371194 69371637 + 3 NA intron (NM_001104554, intron 3 of 8) Zaphod|DNA|hAT-Tip100 -42934 NM_001367804 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 681-70 chr5 180383467 180383884 + 3 NA Intergenic AluSc8|SINE|Alu -30339 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 378-141 chr14 72716574 72716816 + 3 NA intron (NM_001280544, intron 5 of 9) L2a|LINE|L2 175954 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 471-17 chr1 240983811 240984037 + 3 NA intron (NM_001350116, intron 3 of 16) intron (NM_001350116, intron 3 of 16) -148348 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 465-55 chr11 96207762 96207980 + 3 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -133567 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 673-23 chr11 108587845 108588077 + 3 NA intron (NM_015065, intron 1 of 5) AluSq2|SINE|Alu 5807 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 793-17 chr14 48807003 48807456 + 3 NA Intergenic OldhAT1|DNA|hAT-Ac 779151 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 397-336 chr8 79491753 79492042 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -119220 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 227-41 chr10 66024683 66024807 + 3 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 453320 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 510-161 chr2 229645669 229645926 + 3 NA intron (NM_139072, intron 1 of 12) L2b|LINE|L2 68758 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 480-18 chr1 241303551 241303787 + 3 NA intron (NM_001282778, intron 2 of 16) L1MC5|LINE|L1 52157 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 734-70 chr7 31924175 31924648 + 3 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 145996 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 541-194 chr5 144695215 144695521 + 3 NA Intergenic L1MB5|LINE|L1 489977 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 436-68 chr12 61566323 61566560 + 3 NA Intergenic L2c|LINE|L2 626398 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 680-70 chr2 230524291 230524598 + 3 NA intron (NM_001080391, intron 24 of 28) LOR1-int|LTR|ERV1 107688 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 663-28 chr12 42598530 42598940 + 3 NA Intergenic Intergenic -8989 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 349-48 chr10 20751496 20751688 + 3 NA Intergenic L1MA8|LINE|L1 146010 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 419-314 chrX 51078838 51079077 + 3 NA Intergenic Intergenic 92464 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 380-406 chr8 124782760 124782963 + 3 NA Intergenic Intergenic -39124 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 347-11 chr1 67513113 67513257 + 3 NA Intergenic LTR9C|LTR|ERV1 -82783 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 533-206 chr6 162524252 162524486 + 3 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -202763 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 481-290 chr8 65261716 65261903 + 3 NA Intergenic Intergenic -81469 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 638-151 chr8 25703999 25704346 + 3 NA Intergenic Intergenic 244939 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 483-56 chr13 78548561 78548836 + 3 NA intron (NR_047001, intron 3 of 5) L1MC3|LINE|L1 -47424 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 299-152 chr16 7208733 7208880 + 3 NA intron (NM_018723, intron 4 of 15) AluJr|SINE|Alu -124039 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 431-253 chr6 121564237 121564415 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 128680 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 506-202 chr4 38891702 38892119 + 3 NA intron (NM_001330764, intron 3 of 13) intron (NM_001330764, intron 3 of 13) 23878 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 332-250 chr2 78756159 78756368 + 3 NA Intergenic L1MC4a|LINE|L1 210732 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 823 chr1 32415652 32416030 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 -21400 NM_001143888 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 876-14 chr15 97118433 97118904 + 3 NA Intergenic Intergenic 335233 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 301-63 chr11 42914080 42914190 + 3 NA Intergenic Intergenic 355234 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 884-16 chr19 36448898 36449466 + 3 NA exon (NM_001145343, exon 5 of 5) exon (NM_001145343, exon 5 of 5) 28008 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 416-286 chr5 152040312 152040535 + 3 NA intron (NR_109876, intron 1 of 2) MLT1G|LTR|ERVL-MaLR 81525 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 291-457 chr8 92573096 92573258 + 3 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 82317 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 584-171 chr8 90345807 90346129 + 3 NA intron (NR_051989, intron 2 of 3) L1ME4b|LINE|L1 124480 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 252-303 chr4 98102942 98103079 + 3 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 40466 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 498-159 chr22 45816968 45817234 + 3 NA intron (NM_013236, intron 10 of 11) intron (NM_013236, intron 10 of 11) 56577 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 460-21 chr1 221361756 221361987 + 3 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -25575 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 997-2 chr1 162910906 162911487 + 3 NA Intergenic L1M4|LINE|L1 -42381 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 439-262 chr7 29139139 29139312 + 3 NA intron (NM_001371261, intron 2 of 13) MIR3|SINE|MIR 7312 NM_019029 54504 Hs.233389 NM_019029 ENSG00000106066 CPVL HVLP carboxypeptidase vitellogenic like protein-coding 488-144 chr2 123984430 123984708 + 3 NA Intergenic L1ME1|LINE|L1 40605 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 444-49 chr12 38874725 38875102 + 3 NA intron (NM_153634, intron 1 of 19) intron (NM_153634, intron 1 of 19) 30678 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 540-183 chr6 54104275 54104678 + 3 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -6967 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 460-233 chr5 21702742 21703039 + 3 NA Intergenic L1ME1|LINE|L1 -181564 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 438-200 chr4 106625029 106625246 + 3 NA Intergenic L1ME1|LINE|L1 191513 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 563-35 chr11 103803160 103803396 + 3 NA Intergenic LTR88c|LTR|Gypsy? -46628 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 313-7 chr1 45352297 45352415 + 3 NA intron (NM_007170, intron 5 of 10) intron (NM_007170, intron 5 of 10) -11886 NM_001350651 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 406-118 chr18 13339475 13339730 + 3 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 61497 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 404-292 chr7 55915313 55915480 + 3 NA intron (NM_182633, intron 4 of 6) intron (NM_182633, intron 4 of 6) 27940 NM_182633 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 629-96 chr4 183571137 183571416 + 3 NA Intergenic Intergenic 65194 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 205-94 chr14 86381361 86381467 + 3 NA Intergenic MIRb|SINE|MIR 446736 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 1067-3 chr12 13656422 13657244 + 3 NA intron (NM_000834, intron 4 of 12) MIR3|SINE|MIR -280088 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 1888-3 chr17 67047123 67048383 + 3 NA intron (NM_000727, intron 1 of 3) L1M4|LINE|L1 3199 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 631-58 chr2 18093344 18093602 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 214806 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 360-344 chr5 8495007 8495168 + 3 NA Intergenic Intergenic 34162 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 1135-7 chr5 3358505 3359231 + 3 NA Intergenic Tigger4b|DNA|TcMar-Tigger -93948 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 460-251 chr5 159708613 159708891 + 3 NA Intergenic L1ME3F|LINE|L1 162632 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 541-155 chr3 71543518 71543819 + 3 NA promoter-TSS (NM_001244816) promoter-TSS (NM_001244816) -111 NM_001244816 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 757-30 chr2 111626538 111626970 + 3 NA Intergenic L1MDa|LINE|L1 -131593 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 299-269 chr22 34842308 34842461 + 3 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 155532 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 450-230 chr4 166021939 166022192 + 3 NA intron (NM_001204760, intron 8 of 9) intron (NM_001204760, intron 8 of 9) 148828 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 267-243 chr22 28223431 28223603 + 3 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -236352 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 762-65 chr7 40383539 40383896 + 3 NA intron (NM_024728, intron 9 of 14) L2c|LINE|L2 248741 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 489-204 chr5 53138560 53138887 + 3 NA Intergenic Intergenic 28881 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 431-36 chr10 37825042 37825254 + 3 NA intron (NM_001352493, intron 5 of 6) intron (NM_001352493, intron 5 of 6) -29973 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 617-135 chr8 114721324 114721672 + 3 NA Intergenic Intergenic 946515 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 932-19 chr4 116550169 116550672 + 3 NA Intergenic Intergenic 250695 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 691-70 chr5 155358175 155358642 + 3 NA Intergenic L1PA15|LINE|L1 344653 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 563-108 chr20 61463896 61464279 + 3 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -35334 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 408-6 chr1 60448525 60448694 + 3 NA Intergenic Intergenic 174076 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 580-117 chr3 102039687 102039965 + 3 NA Intergenic Intergenic 98967 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 455-145 chr20 11164699 11164851 + 3 NA Intergenic Intergenic 108608 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 347-373 chr5 13287314 13287538 + 3 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -254540 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 371-44 chr10 49302960 49303178 + 3 NA intron (NM_001135196, intron 1 of 2) intron (NM_001135196, intron 1 of 2) 3899 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 546-52 chr12 42673859 42674097 + 3 NA intron (NR_135026, intron 4 of 4) intron (NR_135026, intron 4 of 4) -18238 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 343-162 chr15 70405977 70406149 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR 99865 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 424-46 chr11 79065256 79065524 + 3 NA intron (NM_001098816, intron 5 of 33) L2c|LINE|L2 336719 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 465-92 chr16 9395411 9395701 + 3 NA intron (NR_135195, intron 1 of 2) intron (NR_135195, intron 1 of 2) 39968 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 463-90 chr14 46550619 46550897 + 3 NA Intergenic MER41G|LTR|ERV1 79399 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 452-99 chr16 17358015 17358370 + 3 NA intron (NM_022166, intron 1 of 11) AluJr|SINE|Alu 112768 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 534-272 chr9 3082713 3083030 + 3 NA Intergenic Intergenic -98718 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 306-563 chrX 86124436 86124628 + 3 NA Intergenic L1PREC2|LINE|L1 -23919 NM_001139514 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 302-447 chr8 79129770 79129907 + 3 NA Intergenic Intergenic -202350 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 730-75 chr7 126260890 126261275 + 3 NA Intergenic Intergenic 797102 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 456-136 chr18 55903473 55903740 + 3 NA intron (NR_110755, intron 1 of 3) intron (NR_110755, intron 1 of 3) 16593 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 181-149 chr7 126556760 126556837 + 3 NA intron (NM_001371085, intron 8 of 10) intron (NM_001371085, intron 8 of 10) 501386 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 483-147 chr21 21074693 21074955 + 3 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) -72338 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 256-90 chr12 77876156 77876311 + 3 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 45339 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 331-374 chr4 34906424 34906591 + 3 NA Intergenic Intergenic -636760 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 737-30 chr16 88545100 88545476 + 3 NA Intergenic Intergenic -14235 NR_148997 100128882 Hs.722546 NR_148997 ENSG00000261744 LOC100128882 - uncharacterized LOC100128882 ncRNA 552-33 chr11 55637973 55638254 + 3 NA promoter-TSS (NM_001004124) promoter-TSS (NM_001004124) -245 NM_001004124 81300 NM_001004124 ENSG00000181927 OR4P4 OR4P3P olfactory receptor family 4 subfamily P member 4 protein-coding 356-312 chr3 4240271 4240574 + 3 NA Intergenic Intergenic -62882 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 668-56 chr21 30887569 30888024 + 3 NA Intergenic MER113A|DNA|hAT-Charlie -6216 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 572-113 chr3 126820150 126820408 + 3 NA intron (NM_032343, intron 4 of 7) L1ME3|LINE|L1 116039 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 543-56 chr11 128229977 128230284 + 3 NA intron (NR_146647, intron 3 of 3) L1MEd|LINE|L1 21364 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 549-56 chr13 106485205 106485439 + 3 NA Intergenic Intergenic 49718 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 465-111 chr17 80009751 80009920 + 3 NA intron (NM_019020, intron 3 of 11) intron (NM_019020, intron 3 of 11) 26037 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 532-96 chr17 71890113 71890413 + 3 NA Intergenic Intergenic 135716 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 379-184 chr20 16129792 16130030 + 3 NA Intergenic Intergenic -144029 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 921-18 chr5 116879111 116879593 + 3 NA Intergenic Intergenic -117143 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 504-82 chr15 87123737 87124034 + 3 NA Intergenic Intergenic -135459 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 485-7 chr1 51056095 51056263 + 3 NA Intergenic L1M4|LINE|L1 -3658 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 528-268 chrX 100499137 100499409 + 3 NA Intergenic L1MA5|LINE|L1 -85663 NM_022144 64102 Hs.132957 NM_022144 ENSG00000000005 TNMD BRICD4|CHM1L|TEM tenomodulin protein-coding 236-252 chr4 39212922 39213079 + 3 NA intron (NM_025132, intron 9 of 36) L1MD2|LINE|L1 30471 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 183-145 chr7 54016046 54016107 + 3 NA Intergenic Intergenic -204145 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 487-298 chr8 131370735 131371083 + 3 NA Intergenic MIR|SINE|MIR -330000 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 650-62 chr20 7488041 7488331 + 3 NA Intergenic LTR39|LTR|ERV1 116578 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 329-497 chr6 64562773 64562947 + 3 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) -738558 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 521-255 chr8 74695579 74695781 + 3 NA intron (NR_033830, intron 2 of 5) L1PB1|LINE|L1 -10013 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 418-114 chr2 67776578 67776784 + 3 NA Intergenic Intergenic 48881 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 446-7 chr1 53402720 53402940 + 3 NA Intergenic LTR27E|LTR|ERV1 37190 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 537-193 chr5 46324897 46325245 + 3 NA Intergenic ALR/Alpha|Satellite|centr -628691 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 827-4 chr10 78851516 78851853 + 3 NA Intergenic MER121|DNA|hAT? 215764 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 847-3 chr1 181694447 181694905 + 3 NA intron (NM_001205293, intron 7 of 47) MSTD|LTR|ERVL-MaLR 211159 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 782-50 chr4 102999691 103000064 + 3 NA intron (NR_047515, intron 1 of 10) THE1D|LTR|ERVL-MaLR 19828 NM_139173 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 584-161 chr7 34540860 34541079 + 3 NA intron (NR_033665, intron 2 of 3) L1PA8|LINE|L1 -117249 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 456-116 chr15 91394519 91394757 + 3 NA Intergenic L1MA9|LINE|L1 -68701 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 791-30 chr17 60775804 60776175 + 3 NA intron (NM_001330413, intron 6 of 25) intron (NM_001330413, intron 6 of 25) 98138 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 781-19 chr14 70450217 70450681 + 3 NA Intergenic L1MDa|LINE|L1 -1725 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 450-68 chr12 112748823 112749009 + 3 NA intron (NM_001347952, intron 1 of 21) MER102a|DNA|hAT-Charlie -42622 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 539-155 chr4 31101804 31102080 + 3 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -69202 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 743-28 chr17 58893206 58893658 + 3 NA intron (NM_014906, intron 1 of 6) L1MC1|LINE|L1 137563 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 433-107 chr17 52138522 52138734 + 3 NA intron (NM_001082533, intron 2 of 9) MLT1N2|LTR|ERVL-MaLR 20086 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 575-40 chr12 33306354 33306724 + 3 NA Intergenic Intergenic 133280 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 478-143 chr2 113681304 113681575 + 3 NA Intergenic AluSq2|SINE|Alu 39929 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 652-85 chr4 44517910 44518281 + 3 NA Intergenic Intergenic -69286 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 1198-11 chr8 19627583 19628299 + 3 NA intron (NR_148898, intron 1 of 9) L1MD2|LINE|L1 -25396 NM_001354491 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 163-57 chr17 71964601 71964665 + 3 NA Intergenic Intergenic 61346 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 853-15 chr2 11975610 11976201 + 3 NA Intergenic MIRb|SINE|MIR -31211 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 634-76 chr2 79838903 79839328 + 3 NA intron (NM_001282598, intron 3 of 17) L1ME3Cz|LINE|L1 27468 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 805-7 chr10 66898828 66899283 + 3 NA intron (NR_111911, intron 5 of 6) L1MB1|LINE|L1 -26981 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 532-7 chr1 113264803 113265024 + 3 NA Intergenic L2a|LINE|L2 -58660 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 571-78 chr2 125182626 125183001 + 3 NA Intergenic L1PA16|LINE|L1 935172 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 430-157 chr2 142250278 142250461 + 3 NA Intergenic L1ME2z|LINE|L1 -118668 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 691-68 chr5 44128585 44128887 + 3 NA Intergenic Intergenic -259996 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 912-30 chr22 48748469 48748865 + 3 NA intron (NM_001082967, intron 3 of 3) intron (NM_001082967, intron 3 of 3) -31628 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 680-103 chr6 45878548 45879041 + 3 NA Intergenic Intergenic 58803 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 545-151 chr3 190842681 190842980 + 3 NA Intergenic MIR|SINE|MIR 19864 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 493-195 chr3 33260520 33260760 + 3 NA Intergenic L1M4|LINE|L1 -16385 NM_001349319 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 396-8 chr1 62380072 62380331 + 3 NA Intergenic L1MC5|LINE|L1 -56103 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 527-239 chr7 7285997 7286239 + 3 NA Intergenic L1MA9|LINE|L1 30964 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 670-81 chr3 159558267 159558665 + 3 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 210146 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 822-12 chr14 19838162 19838581 + 3 NA Intergenic L1PA13|LINE|L1 30802 NR_145507 283617 NM_001348266 ENSG00000176290 OR4K3 OR14-10|OR4K3P olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding 638-6 chr1 106653910 106654369 + 3 NA Intergenic Intergenic -164100 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 725-2 chr1 66690652 66691062 + 3 NA intron (NM_001350218, intron 15 of 22) intron (NM_001350218, intron 15 of 22) -61602 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 373-111 chr14 56920405 56920592 + 3 NA non-coding (NR_146411, exon 3 of 3) non-coding (NR_146411, exon 3 of 3) 107340 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 593-115 chr5 34060219 34060499 + 3 NA intron (NR_146599, intron 7 of 11) Tigger3c|DNA|TcMar-Tigger -17146 NM_181435 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 349-445 chr6 56195793 56196027 + 3 NA intron (NM_001318752, intron 1 of 28) L1MA9|LINE|L1 51670 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 354-169 chr17 13571516 13571709 + 3 NA intron (NM_006042, intron 1 of 1) L1ME2z|LINE|L1 -27966 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 445-97 chr18 5366495 5366804 + 3 NA Intergenic Intergenic -69596 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 610-15 chr10 16560483 16560918 + 3 NA Intergenic L2a|LINE|L2 -38821 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 477-102 chr15 57023600 57023843 + 3 NA intron (NM_001322164, intron 3 of 19) Tigger13a|DNA|TcMar-Tigger 104276 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 498-151 chr20 47079791 47080146 + 3 NA intron (NM_172110, intron 7 of 13) L1ME4b|LINE|L1 -86999 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 435-190 chr5 26841418 26841582 + 3 NA Intergenic Intergenic 197086 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 443-286 chr7 114127430 114127682 + 3 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 41229 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 516-152 chr20 19125677 19125903 + 3 NA Intergenic L1MA9|LINE|L1 -86852 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 553-160 chr3 144018203 144018411 + 3 NA Intergenic Intergenic 45226 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 566-11 chr10 33939667 33939958 + 3 NA Intergenic Intergenic -167132 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 981-3 chr11 54756351 54756932 + 3 NA Intergenic ALR/Alpha|Satellite|centr 49809 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 368-327 chr4 45863606 45863872 + 3 NA Intergenic L1MD|LINE|L1 260315 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 443-298 chr8 131677894 131678097 + 3 NA Intergenic MIR|SINE|MIR -226098 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 459-209 chr4 57682911 57683139 + 3 NA Intergenic Intergenic 257153 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 534-128 chr2 132890255 132890571 + 3 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) -25144 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 634-58 chr14 71614421 71614902 + 3 NA intron (NM_001354286, intron 6 of 24) intron (NM_001354286, intron 6 of 24) 28363 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 388-3 chr1 37206109 37206253 + 3 NA Intergenic L1MA7|LINE|L1 44618 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 327-298 chr20 49242081 49242326 + 3 NA exon (NM_001348187, exon 19 of 22) exon (NM_001348187, exon 19 of 22) 22908 NM_001348187 55661 Hs.65234 NM_017895 ENSG00000124228 DDX27 DRS1|Drs1p|HSPC259|PP3241|RHLP|dJ686N3.1 DEAD-box helicase 27 protein-coding 497-104 chr18 64534817 64535023 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -274865 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 408-151 chr2 19709452 19709670 + 3 NA Intergenic L1M4|LINE|L1 -159293 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 439-146 chr2 152419444 152419631 + 3 NA intron (NM_052905, intron 1 of 25) L1MA7|LINE|L1 84363 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 405-73 chr13 27680767 27680998 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 58990 NM_152705 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 471-25 chr10 30995504 30995680 + 3 NA intron (NM_001143766, intron 1 of 7) L1M4b|LINE|L1 3925 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 540-8 chr1 71315183 71315466 + 3 NA Intergenic Intergenic 234000 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 460-213 chr3 181622161 181622472 + 3 NA intron (NR_075090, intron 2 of 2) intron (NR_075090, intron 2 of 2) 11982 NR_004053 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 527-179 chr3 106875234 106875426 + 3 NA Intergenic MIR|SINE|MIR 365308 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 314-19 chr1 86478737 86478874 + 3 NA intron (NM_001285, intron 4 of 13) intron (NM_001285, intron 4 of 13) 9878 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 1023-7 chr12 128198372 128199199 + 3 NA Intergenic Intergenic -68618 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 531-71 chr15 68257811 68258066 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -19807 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 349-376 chr4 87937911 87938100 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -37645 NM_000582 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 665-51 chr2 171246938 171247302 + 3 NA Intergenic L2c|LINE|L2 -15827 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 425-205 chr4 63344010 63344200 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1065345 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 662-32 chr16 35579644 35580011 + 3 NA Intergenic Intergenic -72657 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 526-146 chr2 208584919 208585132 + 3 NA intron (NR_136588, intron 2 of 5) intron (NR_136588, intron 2 of 5) 42383 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 755-34 chr2 39844081 39844450 + 3 NA Intergenic Intergenic -64989 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 330-494 chr7 83543463 83543612 + 3 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 97894 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 398-329 chr7 62839988 62840290 + 3 NA Intergenic ALR/Alpha|Satellite|centr 463917 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 628-62 chr19 43878962 43879315 + 3 NA intron (NM_001033719, intron 1 of 1) L1MEg|LINE|L1 998 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 745-17 chr16 73632872 73633208 + 3 NA Intergenic AluY|SINE|Alu 246235 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 523-92 chr16 8469054 8469300 + 3 NA Intergenic Intergenic 120661 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 609-79 chr3 106450248 106450546 + 3 NA Intergenic Intergenic -580996 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 388-133 chr17 27377170 27377393 + 3 NA Intergenic LTR8|LTR|ERV1 -40724 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 410-335 chr9 116893855 116894050 + 3 NA intron (NM_014010, intron 9 of 21) intron (NM_014010, intron 9 of 21) 206647 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 354-225 chr2 134618766 134618936 + 3 NA intron (NM_030923, intron 2 of 7) L1MB7|LINE|L1 100149 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 571-59 chr16 78913761 78914003 + 3 NA intron (NM_001291997, intron 7 of 7) AluJr|SINE|Alu 686855 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 916-14 chr2 133459955 133460394 + 3 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 108289 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 393-251 chr4 127750891 127751036 + 3 NA intron (NM_001318467, intron 2 of 6) L1MA7|LINE|L1 20563 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 711-42 chr21 32123905 32124264 + 3 NA Intergenic HAL1|LINE|L1 -37789 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 317-507 chr8 132086924 132087064 + 3 NA intron (NM_001145095, intron 9 of 15) intron (NM_001145095, intron 9 of 15) 18271 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 436-108 chr17 35586511 35586730 + 3 NA promoter-TSS (NM_001282) promoter-TSS (NM_001282) -702 NM_001030006 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 653-117 chr8 32948047 32948395 + 3 NA Intergenic L1M4|LINE|L1 226386 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 342-195 chr17 71098400 71098562 + 3 NA non-coding (NR_104152, exon 4 of 4) non-coding (NR_104152, exon 4 of 4) 103698 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 509-203 chr5 108779220 108779442 + 3 NA intron (NM_005246, intron 2 of 19) L1MC1|LINE|L1 30383 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 1112-2 chr1 230032645 230033376 + 3 NA Intergenic MIRb|SINE|MIR -24779 NM_001291866 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 518-148 chr2 164411742 164412073 + 3 NA Intergenic Intergenic 156588 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 403-172 chr2 228519344 228519560 + 3 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 91943 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 407-35 chr10 76734092 76734359 + 3 NA Intergenic Charlie16a|DNA|hAT-Charlie -153819 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 380-53 chr10 96140343 96140487 + 3 NA intron (NM_001330737, intron 4 of 6) intron (NM_001330737, intron 4 of 6) 9793 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 775-16 chr11 79344792 79345160 + 3 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 57133 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 511-50 chr12 58289330 58289656 + 3 NA Intergenic L2c|LINE|L2 201601 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 1287-5 chr4 35654382 35655107 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 589195 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 520-31 chr10 39186779 39187011 + 3 NA Intergenic ALR/Alpha|Satellite|centr 490299 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 797-43 chr6 40468189 40468701 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 90108 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 627-91 chr5 58708856 58709129 + 3 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 125917 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 293-139 chr15 100468856 100469014 + 3 NA intron (NM_001290341, intron 12 of 13) MIRb|SINE|MIR 75351 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 309-398 chr4 76313740 76313947 + 3 NA intron (NM_001042784, intron 23 of 23) L1ME3G|LINE|L1 7817 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 473-307 chrX 57191910 57192183 + 3 NA Intergenic L1MA2|LINE|L1 -54421 NM_019003 54466 Hs.460725 NM_019003 ENSG00000147059 SPIN2A DXF34|SPIN2|TDRD25|dJ323P24.1 spindlin family member 2A protein-coding 602-56 chr2 57147203 57147489 + 3 NA Intergenic L1PA10|LINE|L1 -760305 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 705-91 chr7 21323984 21324274 + 3 NA Intergenic AluSg|SINE|Alu -103954 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 372-450 chr7 14730541 14730710 + 3 NA intron (NM_001350717, intron 5 of 24) intron (NM_001350717, intron 5 of 24) 110825 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 428-154 chr20 39606899 39607122 + 3 NA Intergenic MIRb|SINE|MIR -382262 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 567-158 chr6 63925865 63926112 + 3 NA intron (NM_001292009, intron 35 of 43) L1PA8|LINE|L1 119152 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 553-245 chr9 10261176 10261423 + 3 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 351703 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 1008-12 chr3 80743488 80743970 + 3 NA Intergenic Intergenic -21168 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 744-9 chr10 71097568 71098095 + 3 NA Intergenic L1MB7|LINE|L1 -114739 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 705-6 chr10 41762804 41763323 + 3 NA Intergenic ALR/Alpha|Satellite|centr 604982 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 573-18 chr1 240018606 240018938 + 3 NA Intergenic L1MB3|LINE|L1 11248 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 338-580 chr9 27706716 27706920 + 3 NA Intergenic MIRb|SINE|MIR -132952 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 497-43 chr11 80877210 80877545 + 3 NA Intergenic Intergenic -114574 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 862-31 chr7 89318960 89319445 + 3 NA intron (NM_181646, intron 2 of 3) MER9a1|LTR|ERVK -523465 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 221 chr1 25110320 25110436 + 3 NA Intergenic Intergenic 86875 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 431-9 chr1 61565294 61565610 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -88790 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 574-6 chr1 119458674 119458911 + 3 NA Intergenic L1MC1|LINE|L1 43642 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 408-116 chr15 71431036 71431212 + 3 NA intron (NM_024817, intron 6 of 16) LTR49-int|LTR|ERV1 -116112 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 487-279 chr7 113533237 113533455 + 3 NA Intergenic L1PA2|LINE|L1 385663 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 159-49 chr20 21695735 21695797 + 3 NA intron (NR_109878, intron 1 of 4) intron (NR_109878, intron 1 of 4) 7819 NR_109878 101929608 Hs.694665 NR_109878 ENSG00000280350 LINC01726 - long intergenic non-protein coding RNA 1726 ncRNA 423-210 chr4 189344195 189344370 + 3 NA Intergenic Intergenic -315324 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 305-480 chr6 100936098 100936227 + 3 NA Intergenic L1MEh|LINE|L1 -54790 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 386-30 chr10 34140854 34141035 + 3 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -368264 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 694-12 chr10 37791363 37791878 + 3 NA intron (NR_147992, intron 6 of 8) intron (NR_147992, intron 6 of 8) 3555 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 323-366 chr4 56220927 56221079 + 3 NA intron (NM_020722, intron 2 of 10) L2b|LINE|L2 50808 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 588-7 chr1 206492432 206492650 + 3 NA intron (NM_001193321, intron 17 of 20) MER5B|DNA|hAT-Charlie -14990 NM_182664 83593 Hs.497579 NM_031437 ENSG00000266094 RASSF5 Maxp1|NORE1|NORE1A|NORE1B|RAPL|RASSF3 Ras association domain family member 5 protein-coding 555-203 chr8 90452825 90453046 + 3 NA Intergenic Intergenic 153128 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 442-208 chr4 41883307 41883566 + 3 NA promoter-TSS (NR_104143) promoter-TSS (NR_104143) -825 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 306-9 chr1 71259536 71259715 + 3 NA Intergenic Intergenic 178301 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 551-167 chr5 122136133 122136445 + 3 NA intron (NM_207317, intron 1 of 1) L1MA4|LINE|L1 6743 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 489-131 chr2 65758084 65758304 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -325595 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 714-59 chr5 41042964 41043335 + 3 NA intron (NM_173489, intron 18 of 41) intron (NM_173489, intron 18 of 41) 28193 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 347-437 chr6 121555148 121555317 + 3 NA Intergenic L1MA9|LINE|L1 119586 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 538-211 chr6 96098763 96099048 + 3 NA intron (NM_006581, intron 1 of 2) intron (NM_006581, intron 1 of 2) 82931 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 346-321 chr3 103252371 103252613 + 3 NA Intergenic LTR33C|LTR|ERVL 271624 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 459-7 chr1 51824956 51825272 + 3 NA intron (NM_001101662, intron 6 of 30) intron (NM_001101662, intron 6 of 30) 11288 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 665-114 chr9 32802410 32802766 + 3 NA Intergenic Intergenic 19048 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 293-151 chr17 17026597 17026797 + 3 NA Intergenic L1MA9|LINE|L1 -15760 NM_001364716 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 519-218 chr7 113476519 113476792 + 3 NA Intergenic L1MC3|LINE|L1 -358073 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 370-250 chr2 157147006 157147230 + 3 NA Intergenic Intergenic -110587 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 957-8 chr12 108230219 108230884 + 3 NA intron (NM_001304447, intron 7 of 9) MIR|SINE|MIR 90111 NM_001142345 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 556-56 chr12 111304558 111304766 + 3 NA TTS (NR_106818) TTS (NR_106818) 520 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 409-305 chr9 9610187 9610535 + 3 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -189031 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 641-27 chr12 24519313 24519774 + 3 NA intron (NM_152989, intron 1 of 17) L2a|LINE|L2 42948 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 1053-4 chr12 37966380 37967153 + 3 NA Intergenic Intergenic -350008 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 558-77 chr18 6787697 6787951 + 3 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -46661 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 270-419 chr8 142085862 142086055 + 3 NA Intergenic L1MEc|LINE|L1 -90381 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 562-185 chr5 163555948 163556167 + 3 NA Intergenic Intergenic 50438 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 502-163 chr21 29457032 29457210 + 3 NA Intergenic MIRc|SINE|MIR -38926 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 861-4 chr10 130911633 130912155 + 3 NA Intergenic L1MB8|LINE|L1 50774 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 764-43 chr21 19471477 19471953 + 3 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR 428040 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 426-317 chrM 13074 13265 + 3 NA Intergenic Intergenic -5655 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 532-6 chr1 111063735 111063983 + 3 NA Intergenic L1ME3B|LINE|L1 -75524 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 900-46 chr9 89195011 89195367 + 3 NA Intergenic L1MA6|LINE|L1 -16371 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 580-23 chr10 109524879 109525257 + 3 NA Intergenic L1MB8|LINE|L1 398178 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 514-156 chr2 156936267 156936612 + 3 NA Intergenic Intergenic -321266 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 414-27 chr10 66397846 66398087 + 3 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -528070 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 267-54 chr10 80573355 80573463 + 3 NA intron (NM_207372, intron 3 of 6) L1ME3Cz|LINE|L1 32590 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 777-70 chr8 127469071 127469630 + 3 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 12789 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 563-100 chr2 232242087 232242525 + 3 NA intron (NR_046477, intron 10 of 18) intron (NR_046477, intron 10 of 18) 69653 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 460-161 chr2 211686140 211686296 + 3 NA intron (NM_001042599, intron 12 of 26) L1MD1|LINE|L1 740142 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 532-171 chr3 117314911 117315189 + 3 NA Intergenic MER4D1|LTR|ERV1 375875 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 395-203 chr21 27803407 27803597 + 3 NA Intergenic Intergenic 81123 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 891-43 chr9 4904535 4904845 + 3 NA Intergenic Intergenic 54393 NR_029836 406894 NR_029836 ENSG00000199065 MIR101-2 MIRN101-2|mir-101-2 microRNA 101-2 ncRNA 730-37 chr20 19415329 19415696 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -130916 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 620-122 chr6 125868057 125868342 + 3 NA intron (NM_181782, intron 3 of 15) L1M5|LINE|L1 -49341 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 525-128 chr2 148148366 148148658 + 3 NA intron (NM_018328, intron 2 of 14) L1M4|LINE|L1 -126908 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 468-267 chr5 145198236 145198447 + 3 NA Intergenic MIRb|SINE|MIR 637001 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 542-31 chr10 118096113 118096473 + 3 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -49352 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 485-321 chrX 58129191 58129389 + 3 NA Intergenic HSAT4|Satellite|centr -218657 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 511-24 chr10 85457850 85458026 + 3 NA intron (NR_120671, intron 3 of 5) MIRb|SINE|MIR 8346 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 546-76 chr15 25262626 25262892 + 3 NA intron (NR_146177, intron 139 of 147) L1MCa|LINE|L1 -1768 NR_003498 100036566 NR_003498 SNORD115-45 HBII-52-45|SNORD115-48 small nucleolar RNA, C/D box 115-45 snoRNA 443-48 chr11 15446462 15446643 + 3 NA Intergenic MIR|SINE|MIR -197333 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 464-270 chr9 137973668 137973946 + 3 NA intron (NM_001243812, intron 11 of 45) intron (NM_001243812, intron 11 of 45) -26747 NR_132978 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 873-6 chr11 103375641 103376078 + 3 NA intron (NM_001377, intron 83 of 88) THE1D-int|LTR|ERVL-MaLR 266433 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 552-91 chr18 64892098 64892471 + 3 NA Intergenic Intergenic -632229 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 566-165 chr6 50306619 50306849 + 3 NA Intergenic PABL_A|LTR|ERV1 -256805 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 967-5 chr12 114165707 114166102 + 3 NA Intergenic Intergenic 75866 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 498-107 chr18 2187081 2187390 + 3 NA Intergenic Intergenic 384270 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 388-47 chr10 75301795 75302014 + 3 NA intron (NR_038226, intron 2 of 3) L1M4a2|LINE|L1 5521 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 353-351 chr4 11289075 11289263 + 3 NA Intergenic MIR|SINE|MIR -79658 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 742-67 chr5 175152840 175153282 + 3 NA Intergenic Intergenic -157330 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 467-7 chr1 68468974 68469235 + 3 NA Intergenic Intergenic -19150 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 445-84 chr16 8420332 8420520 + 3 NA Intergenic L2b|LINE|L2 169412 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 569-158 chr6 126670167 126670382 + 3 NA Intergenic L1M7|LINE|L1 185643 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 530-46 chr11 114586694 114586971 + 3 NA intron (NM_017678, intron 2 of 5) HUERS-P3-int|LTR|ERV1 8954 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 469-156 chr20 42034929 42035121 + 3 NA Intergenic Intergenic -416648 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 490-156 chr2 142950604 142950870 + 3 NA intron (NM_001199241, intron 5 of 14) Tigger1|DNA|TcMar-Tigger 73073 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 163-15 chr10 24230421 24230529 + 3 NA intron (NM_019590, intron 2 of 20) MIR|SINE|MIR 21337 NM_019590 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 604-133 chr5 105706176 105706571 + 3 NA Intergenic MER6|DNA|TcMar-Tigger 606899 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 389-325 chr6 126384172 126384410 + 3 NA intron (NR_104462, intron 2 of 3) L1PREC2|LINE|L1 44176 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 737-4 chr1 104305883 104306235 + 3 NA Intergenic L1MA2|LINE|L1 233036 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 301-495 chrX 48235577 48235756 + 3 NA Intergenic MER101-int|LTR|ERV1 -19726 NM_005635 6756 Hs.434142 NM_005635 ENSG00000126752 SSX1 CT5.1|SSRC SSX family member 1 protein-coding 541-239 chr8 109035238 109035626 + 3 NA Intergenic L1ME3F|LINE|L1 -51196 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 325-409 chr4 123790033 123790176 + 3 NA intron (NR_027106, intron 1 of 2) L1PA8|LINE|L1 15840 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 496-12 chr1 76179183 76179391 + 3 NA intron (NM_001349108, intron 1 of 3) L2a|LINE|L2 104541 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 778-33 chr19 29555573 29555954 + 3 NA intron (NM_001146339, intron 4 of 4) L1PA10|LINE|L1 29179 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 751-87 chrX 58386767 58387250 + 3 NA Intergenic ALR/Alpha|Satellite|centr -476375 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 410-273 chr7 7832543 7832734 + 3 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -114031 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 400-262 chr4 127725810 127726061 + 3 NA 3' UTR (NM_015693, exon 16 of 16) 3' UTR (NM_015693, exon 16 of 16) -4465 NM_031291 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 467-224 chr5 53281623 53281843 + 3 NA Intergenic L1MEc|LINE|L1 171891 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 448-27 chr10 17367691 17367902 + 3 NA intron (NM_001004470, intron 3 of 7) intron (NM_001004470, intron 3 of 7) -19140 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 872-2 chr1 59633969 59634381 + 3 NA intron (NM_001350794, intron 10 of 14) AluSc|SINE|Alu 99121 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 183-28 chr11 120912680 120912753 + 3 NA intron (NM_001282470, intron 12 of 19) L2c|LINE|L2 -17919 NR_132790 101929227 Hs.627156 NR_132790 ENSG00000250493 LOC101929227 - uncharacterized LOC101929227 ncRNA 411-29 chr10 56967519 56967723 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 336938 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 402-290 chr5 161593931 161594115 + 3 NA Intergenic L1ME2z|LINE|L1 -45619 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 727-12 chr11 29082148 29082593 + 3 NA Intergenic L1MEg|LINE|L1 -512043 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 708-36 chr2 33997338 33997804 + 3 NA intron (NR_126403, intron 4 of 5) L1M3e|LINE|L1 -69655 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 448-295 chr9 27922748 27922979 + 3 NA Intergenic Intergenic -348997 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 595-33 chr11 97810376 97810748 + 3 NA Intergenic L1MCc|LINE|L1 -1210387 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 440-158 chr3 36530202 36530440 + 3 NA intron (NM_001292049, intron 8 of 8) LTR81A|LTR|Gypsy 149834 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 277-159 chr18 10016967 10017083 + 3 NA Intergenic Intergenic 103009 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 486-204 chr3 84934225 84934446 + 3 NA Intergenic L1M4b|LINE|L1 -24654 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 388-212 chr22 47404039 47404293 + 3 NA Intergenic Intergenic 58595 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 332-412 chr5 51070692 51070911 + 3 NA Intergenic L1M1|LINE|L1 -100614 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 450-210 chr3 151990162 151990352 + 3 NA Intergenic Tigger8|DNA|TcMar-Tigger -62082 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 553-139 chr2 226178720 226178974 + 3 NA intron (NR_046102, intron 5 of 6) intron (NR_046102, intron 5 of 6) 36053 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 621-113 chr7 6153392 6153670 + 3 NA intron (NM_032172, intron 14 of 17) L1PA3|LINE|L1 18606 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 413-290 chr8 9573735 9574036 + 3 NA intron (NM_003747, intron 1 of 26) intron (NM_003747, intron 1 of 26) 17973 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 594-141 chr7 92927227 92927588 + 3 NA Intergenic Intergenic -90780 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 429-328 chrX 62719613 62719828 + 3 NA Intergenic ALR/Alpha|Satellite|centr 631612 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 1408-7 chr5 46162954 46163687 + 3 NA Intergenic ALR/Alpha|Satellite|centr -466940 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 460-175 chr20 45730974 45731177 + 3 NA Intergenic L1M2c|LINE|L1 8728 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 905-31 chr8 50777093 50777570 + 3 NA intron (NR_135797, intron 20 of 20) L1MDa|LINE|L1 613200 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 401-325 chr8 108264057 108264240 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -15431 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 394-250 chr4 141150127 141150398 + 3 NA Intergenic L2a|LINE|L2 -16793 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 834-29 chr3 96655741 96656113 + 3 NA Intergenic L1ME3B|LINE|L1 -158667 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 1377-2 chr8 29691477 29692300 + 3 NA Intergenic L1ME3F|LINE|L1 56221 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 452-164 chr3 31124670 31124863 + 3 NA Intergenic MER34A|LTR|ERV1 37021 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 542-154 chr4 107779650 107780023 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -44729 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 963-24 chr5 110229464 110230106 + 3 NA Intergenic L1MA4A|LINE|L1 284130 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 383-147 chr16 76857706 76857914 + 3 NA Intergenic L1PBa|LINE|L1 -11126 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 449-102 chr18 11682246 11682447 + 3 NA Intergenic L1ME3Cz|LINE|L1 -6918 NM_182978 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 760-73 chr8 88360968 88361314 + 3 NA Intergenic L1MEc|LINE|L1 -33658 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 528-178 chr4 80789104 80789412 + 3 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -241450 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 627-22 chr12 42907035 42907271 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 214937 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 520-212 chr4 46172941 46173169 + 3 NA Intergenic Intergenic -49001 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 879-16 chr2 122128611 122128979 + 3 NA Intergenic L1MA4A|LINE|L1 373144 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 1000-16 chr3 26473634 26473983 + 3 NA Intergenic Intergenic -148998 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 526-137 chr2 132801653 132801867 + 3 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -113797 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 499-98 chr19 6155146 6155329 + 3 NA intron (NM_001289180, intron 5 of 14) L1MEd|LINE|L1 19570 NM_001289178 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 870-13 chr19 52113858 52114262 + 3 NA non-coding (NR_135823, exon 5 of 5) non-coding (NR_135823, exon 5 of 5) -18295 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 445-123 chr2 80449498 80449712 + 3 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 136226 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 1048-16 chr21 20483607 20484144 + 3 NA Intergenic Intergenic -225190 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 545-66 chr13 99070713 99070975 + 3 NA intron (NM_015296, intron 1 of 55) intron (NM_015296, intron 1 of 55) 15850 NM_001318849 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 808-4 chr10 48896359 48896730 + 3 NA intron (NM_020945, intron 44 of 61) intron (NM_020945, intron 44 of 61) 17691 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 456-141 chr18 76886164 76886477 + 3 NA intron (NM_001306089, intron 9 of 30) intron (NM_001306089, intron 9 of 30) 62160 NM_007345 7776 Hs.719137 NM_007345 ENSG00000130856 ZNF236 ZNF236A|ZNF236B zinc finger protein 236 protein-coding 487-143 chr2 75453153 75453398 + 3 NA Intergenic Intergenic -70793 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 442-15 chr1 115585667 115585914 + 3 NA Intergenic MER89|LTR|ERV1 -56180 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 426-218 chr5 3860037 3860236 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 264304 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 696-105 chr8 83676205 83676575 + 3 NA Intergenic L1MD|LINE|L1 272632 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 941-10 chr17 69630597 69631090 + 3 NA intron (NR_109972, intron 3 of 4) L1MC4|LINE|L1 36856 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 269-264 chr4 21410092 21410204 + 3 NA intron (NM_147182, intron 2 of 8) DNA1_Mam|DNA|TcMar 54610 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 498-116 chr2 33308106 33308296 + 3 NA intron (NM_206943, intron 22 of 33) intron (NM_206943, intron 22 of 33) -110315 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 434-252 chr6 122100757 122101012 + 3 NA Intergenic Intergenic -298667 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 502-113 chr17 61084950 61085378 + 3 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 282540 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 316-176 chr14 83316940 83317065 + 3 NA Intergenic Intergenic 674370 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 367-311 chr4 11135976 11136183 + 3 NA Intergenic Intergenic -232748 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 239-334 chr5 147212752 147212943 + 3 NA intron (NR_147191, intron 2 of 2) intron (NR_147191, intron 2 of 2) 22012 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 582-154 chr8 85339088 85339329 + 3 NA intron (NM_001738, intron 3 of 8) Tigger1|DNA|TcMar-Tigger 2506 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 437-166 chr22 27692452 27692713 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 109174 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 273-389 chr6 56666265 56666402 + 3 NA intron (NM_001144770, intron 7 of 94) intron (NM_001144770, intron 7 of 94) -23444 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 434-186 chr3 85437946 85438108 + 3 NA intron (NM_001167674, intron 1 of 9) L1ME4a|LINE|L1 52317 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 710-45 chr2 136986451 136986919 + 3 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 221140 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 444-207 chr5 127765653 127765849 + 3 NA intron (NM_001317938, intron 3 of 6) intron (NM_001317938, intron 3 of 6) 62362 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 454-40 chr10 107642423 107642680 + 3 NA Intergenic Intergenic 426742 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 608-114 chr4 108973973 108974183 + 3 NA intron (NM_001256074, intron 6 of 31) intron (NM_001256074, intron 6 of 31) -211025 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 840-13 chr14 48635880 48636316 + 3 NA Intergenic Intergenic -841084 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 428-108 chr19 32215392 32215601 + 3 NA Intergenic Intergenic -109580 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 800-62 chr8 4980019 4980511 + 3 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 14649 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 288-461 chr8 137281013 137281193 + 3 NA Intergenic MLT2B1|LTR|ERVL 132485 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 341-362 chr3 188414046 188414186 + 3 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 154550 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 397-38 chr10 78340835 78341136 + 3 NA Intergenic L1MCa|LINE|L1 73643 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 509-254 chr8 102637676 102637942 + 3 NA Intergenic Intergenic 16155 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 439-11 chr1 104046048 104046301 + 3 NA Intergenic L1PA15-16|LINE|L1 -26849 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 771-60 chr4 71383159 71383507 + 3 NA intron (NM_003759, intron 3 of 22) intron (NM_003759, intron 3 of 22) 44280 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 263-128 chr16 8428290 8428455 + 3 NA Intergenic Intergenic 161466 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 334-32 chr1 177814884 177815084 + 3 NA Intergenic L2c|LINE|L2 114460 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 511-3 chr1 49974124 49974408 + 3 NA intron (NM_001323575, intron 1 of 12) L3b|LINE|CR1 49688 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 667-115 chr8 108103040 108103344 + 3 NA Intergenic Intergenic -19572 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 477-123 chr18 5226859 5227185 + 3 NA Intergenic Intergenic 11007 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 459-193 chr3 103714626 103714828 + 3 NA Intergenic L1M2|LINE|L1 -190611 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 422-52 chr11 118336231 118336435 + 3 NA Intergenic Intergenic 6372 NM_001040651 915 Hs.504048 NM_000732 ENSG00000167286 CD3D CD3-DELTA|IMD19|T3D CD3d molecule protein-coding 1019-12 chr2 161563258 161563804 + 3 NA Intergenic L1PB4|LINE|L1 -55629 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 663-11 chr10 51833296 51833623 + 3 NA intron (NM_001098512, intron 4 of 17) MIRb|SINE|MIR -133864 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 859-24 chr21 32136658 32137027 + 3 NA Intergenic Intergenic -50547 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 418-146 chr22 27269649 27269802 + 3 NA Intergenic Intergenic -40926 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 321-382 chr3 117527513 117527720 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 163309 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 574-74 chr2 59433528 59433872 + 3 NA Intergenic Intergenic 215992 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 565-82 chr2 100647498 100647805 + 3 NA Intergenic Intergenic 43912 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 216-187 chr2 210511710 210511791 + 3 NA intron (NM_001122633, intron 1 of 38) intron (NM_001122633, intron 1 of 38) -7968 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 1614 chr10 56369786 56370648 + 3 NA Intergenic AluJo|SINE|Alu -8944 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 832-8 chr14 38229461 38229969 + 3 NA Intergenic Intergenic 21811 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 473-184 chr3 154921478 154921769 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -102501 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 775-10 chr10 11743430 11743989 + 3 NA intron (NM_024693, intron 1 of 4) intron (NM_024693, intron 1 of 4) 1327 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 523-28 chr10 48575021 48575314 + 3 NA 3' UTR (NM_001347737, exon 3 of 3) 3' UTR (NM_001347737, exon 3 of 3) 29906 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 346-76 chr11 87408534 87408772 + 3 NA Intergenic Intergenic 310758 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 585-135 chr6 26620740 26621172 + 3 NA Intergenic L1M4|LINE|L1 24003 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 450-84 chr14 66208048 66208288 + 3 NA Intergenic Intergenic -278203 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 447-254 chr8 23187772 23188078 + 3 NA Intergenic MER101-int|LTR|ERV1 -23898 NM_003840 8793 Hs.213467 NM_003840 ENSG00000173530 TNFRSF10D CD264|DCR2|TRAIL-R4|TRAILR4|TRUNDD TNF receptor superfamily member 10d protein-coding 656-38 chr13 93011491 93011870 + 3 NA Intergenic Intergenic -33661 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 571-73 chr2 39360743 39361029 + 3 NA intron (NM_003618, intron 2 of 33) THE1C|LTR|ERVL-MaLR 76399 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 533-36 chr12 53902872 53903121 + 3 NA Intergenic L1ME3E|LINE|L1 -35835 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 501-103 chr2 66939394 66939665 + 3 NA intron (NR_110169, intron 3 of 4) intron (NR_110169, intron 3 of 4) -17039 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 840-9 chr11 48594466 48595152 + 3 NA Intergenic Intergenic 106016 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 1068-13 chr3 53970689 53971307 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -79139 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 657-50 chr2 116611564 116611888 + 3 NA Intergenic Intergenic -1202965 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 495-228 chr7 5037378 5037670 + 3 NA Intergenic AluSx|SINE|Alu -8336 NM_021163 57786 Hs.396178 NM_021163 ENSG00000146587 RBAK ZNF769 RB associated KRAB zinc finger protein-coding 667-3 chr1 113514767 113515208 + 3 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 124472 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 987-7 chr20 42031670 42032201 + 3 NA Intergenic MIR|SINE|MIR -413558 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 469-166 chr21 34141857 34142163 + 3 NA intron (NM_032476, intron 2 of 2) intron (NM_032476, intron 2 of 2) -38667 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 301-211 chr2 82671853 82671959 + 3 NA Intergenic Intergenic -184897 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 614-8 chr10 22447569 22447853 + 3 NA Intergenic Intergenic -9782 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 972-6 chr14 83919020 83919586 + 3 NA Intergenic L1MA8|LINE|L1 1276671 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 587-48 chr14 76543220 76543465 + 3 NA Intergenic Intergenic 171995 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 701-50 chr20 39754302 39754721 + 3 NA Intergenic Intergenic -249950 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 777-76 chrUn_KI270442v1 70720 71125 + 3 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 568-174 chr6 137407410 137407696 + 3 NA Intergenic L1PA14|LINE|L1 86841 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 775-37 chr17 73654767 73655191 + 3 NA Intergenic L2b|LINE|L2 -10534 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 580-168 chr6 144838117 144838427 + 3 NA intron (NM_007124, intron 70 of 73) intron (NM_007124, intron 70 of 73) 432617 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 731-71 chr8 43811320 43811706 + 3 NA Intergenic ALR/Alpha|Satellite|centr 519071 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 249-203 chr2 84872550 84872654 + 3 NA intron (NM_001307978, intron 1 of 4) intron (NM_001307978, intron 1 of 4) 8482 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 560-136 chr5 38656585 38656822 + 3 NA intron (NR_103554, intron 8 of 8) intron (NR_103554, intron 8 of 8) -61298 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 408-160 chr2 81159363 81159601 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 307464 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 843-23 chr2 104497171 104497593 + 3 NA intron (NR_110113, intron 4 of 5) intron (NR_110113, intron 4 of 5) 13127 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 488-302 chrX 95006212 95006395 + 3 NA Intergenic L1MC1|LINE|L1 56923 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 685-22 chr14 56395116 56395601 + 3 NA Intergenic L1MC1|LINE|L1 -118973 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 643-61 chr2 168631407 168631782 + 3 NA intron (NM_001256126, intron 4 of 10) (TA)n|Simple_repeat|Simple_repeat 48651 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 387-61 chr11 56595784 56595951 + 3 NA Intergenic Intergenic 17635 NM_001004740 390168 Hs.553751 NM_001004740 ENSG00000255012 OR5M1 OR11-208|OST050 olfactory receptor family 5 subfamily M member 1 protein-coding 162-93 chr4 27154072 27154155 + 3 NA Intergenic Intergenic -63366 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 393-166 chr2 81144189 81144392 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 322656 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 473-34 chr10 83980532 83980803 + 3 NA Intergenic Intergenic -158842 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 802-14 chr12 60903893 60904327 + 3 NA Intergenic Intergenic 1214740 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 523-46 chr10 110855736 110855975 + 3 NA Intergenic Tigger15a|DNA|TcMar-Tigger 15049 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 704-91 chr9 20219747 20220144 + 3 NA Intergenic Intergenic 191293 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 438-225 chr5 102618434 102618608 + 3 NA TTS (NR_047462) TTS (NR_047462) 37153 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 255-170 chr18 64313413 64313518 + 3 NA intron (NR_033881, intron 5 of 9) ORSL|DNA|hAT-Tip100 -53410 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 493-237 chr5 17298917 17299141 + 3 NA Intergenic Intergenic 81398 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 363-248 chr20 713885 714073 + 3 NA Intergenic L1MEc|LINE|L1 -38177 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 503-130 chr18 21725731 21726020 + 3 NA Intergenic Intergenic -15454 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 766-54 chr4 41045503 41046071 + 3 NA intron (NM_001330658, intron 3 of 15) L2a|LINE|L2 168755 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 834-43 chr7 46467094 46467584 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 229783 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 744-50 chr4 63342713 63343173 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1066507 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 466-2 chr1 40512474 40512678 + 3 NA intron (NM_001346951, intron 2 of 2) L1ME3Cz|LINE|L1 3857 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 554-117 chr2 114154664 114154919 + 3 NA Intergenic MIRb|SINE|MIR -174807 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 864-17 chr16 60610283 60610641 + 3 NA Intergenic L1MA4A|LINE|L1 -250669 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 504-176 chr3 171795859 171796086 + 3 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 14511 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 937-23 chr4 32288985 32289542 + 3 NA Intergenic Intergenic -61775 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 478-56 chr12 14237855 14238204 + 3 NA Intergenic LTR33|LTR|ERVL -127603 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 460-125 chr19 30332984 30333246 + 3 NA Intergenic AluJb|SINE|Alu -39269 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 243-446 chr8 78790028 78790185 + 3 NA intron (NM_001199886, intron 2 of 4) intron (NM_001199886, intron 2 of 4) 15357 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 923-10 chr17 52697553 52698005 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -164342 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 304-517 chr8 87707983 87708094 + 3 NA Intergenic L1MA3|LINE|L1 165977 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 695-42 chr17_GL000205v2_random 27298 27774 + 3 NA Intergenic CER|Satellite|Satellite 30430 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 891-41 chr8 134801685 134802110 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -1290 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 616-52 chr15 100273612 100273867 + 3 NA intron (NM_139057, intron 4 of 21) L1MB3|LINE|L1 68236 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 467-75 chr14 26750000 26750244 + 3 NA intron (NR_147061, intron 3 of 6) L1MEf|LINE|L1 -59226 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 503-182 chr22 27319386 27319560 + 3 NA Intergenic L1ME3A|LINE|L1 8822 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 724-65 chr5 14543989 14544466 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -37565 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 511-281 chr9 85327353 85327645 + 3 NA Intergenic L1PB1|LINE|L1 414530 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 453-221 chr6 17135179 17135373 + 3 NA Intergenic L1PA16|LINE|L1 33018 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 449-40 chr11 24999029 24999221 + 3 NA intron (NM_001009909, intron 9 of 11) intron (NM_001009909, intron 9 of 11) 502072 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 543-88 chr16 46534527 46534763 + 3 NA intron (NR_026556, intron 6 of 16) intron (NR_026556, intron 6 of 16) 34452 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 805-22 chr2 124418443 124418849 + 3 NA intron (NM_130773, intron 4 of 23) intron (NM_130773, intron 4 of 23) 393359 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 286-192 chr2 31313096 31313229 + 3 NA Intergenic MIRb|SINE|MIR 79010 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 633-113 chr7 37522561 37522906 + 3 NA Intergenic Intergenic -73407 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 501-81 chr17 70246795 70247157 + 3 NA Intergenic Intergenic 77441 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 449-54 chr12 58514601 58514777 + 3 NA Intergenic Intergenic -77013 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 443-241 chr5 38444331 38444522 + 3 NA intron (NM_182798, intron 12 of 16) L1MA5A|LINE|L1 -1120 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 326-302 chr20 55594671 55594786 + 3 NA Intergenic L1M5|LINE|L1 -167531 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 319-200 chr18 22121742 22121942 + 3 NA Intergenic L1MB1|LINE|L1 47126 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 307-103 chr12 42674455 42674609 + 3 NA intron (NR_135026, intron 4 of 4) MIR|SINE|MIR -17684 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 728-37 chr16 52503685 52504164 + 3 NA intron (NM_001080430, intron 1 of 6) intron (NM_001080430, intron 1 of 6) 43219 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 692-23 chr12 101010161 101010559 + 3 NA intron (NM_001286616, intron 7 of 26) intron (NM_001286616, intron 7 of 26) 108714 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 304-203 chr17 76799690 76799833 + 3 NA intron (NR_110837, intron 1 of 2) intron (NR_110837, intron 1 of 2) 717 NR_110837 101928514 Hs.617206 NR_110837 ENSG00000267065 LINC02080 - long intergenic non-protein coding RNA 2080 ncRNA 304-355 chr3 137367391 137367628 + 3 NA Intergenic L1MB8|LINE|L1 -396806 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 554-40 chr10 123386315 123386565 + 3 NA Intergenic L1MC5a|LINE|L1 232038 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 367-140 chr15 81781576 81781772 + 3 NA Intergenic MIR3|SINE|MIR 264344 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 568-34 chr12 21946767 21947021 + 3 NA Intergenic L1MA9|LINE|L1 -10200 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 1189-8 chr8 135317992 135318920 + 3 NA Intergenic L2c|LINE|L2 84325 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 592-16 chr10 64328302 64328622 + 3 NA Intergenic Intergenic -497066 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 468-229 chr4 95581344 95581608 + 3 NA Intergenic L1M2|LINE|L1 -32503 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 728-39 chr16 86024135 86024616 + 3 NA Intergenic L1MDa|LINE|L1 106028 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 563-174 chr7 54470087 54470361 + 3 NA Intergenic Intergenic -72101 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 458-86 chr15 48063944 48064129 + 3 NA Intergenic Intergenic -56954 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 416-316 chr7 81635441 81635649 + 3 NA intron (NR_126025, intron 1 of 10) L1ME2|LINE|L1 -9329 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 414-47 chr11 71366847 71367125 + 3 NA Intergenic Intergenic 56368 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 666-22 chr12 51756488 51756784 + 3 NA intron (NM_001369788, intron 14 of 25) intron (NM_001369788, intron 14 of 25) 75281 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 361-376 chr5 149310807 149311015 + 3 NA intron (NM_152406, intron 8 of 18) MIR|SINE|MIR -34588 NM_152407 134266 Hs.511816 NM_152407 ENSG00000164284 GRPEL2 Mt-GrpE#2 GrpE like 2, mitochondrial protein-coding 896-20 chr20 42710494 42711155 + 3 NA intron (NM_133170, intron 6 of 31) MSTB-int|LTR|ERVL-MaLR 25341 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 762-2 chr1 172635848 172636275 + 3 NA Intergenic Intergenic -22947 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 791-35 chr2 33087976 33088328 + 3 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -46445 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 574-200 chrX 121283271 121283561 + 3 NA Intergenic L1M3f|LINE|L1 -87556 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 384-117 chr14 86160474 86160672 + 3 NA Intergenic L1PB2|LINE|L1 225895 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 514-39 chr10 111590361 111590702 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 476240 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 862-30 chr7 33302740 33303250 + 3 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 173431 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 565-113 chr3 44729635 44729847 + 3 NA 5' UTR (NM_001258280, exon 1 of 3) 5' UTR (NM_001258280, exon 1 of 3) 106 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 438-137 chr2 211303540 211303826 + 3 NA Intergenic Intergenic 686112 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 388-342 chr8 77449276 77449451 + 3 NA Intergenic Intergenic -1334 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 709-23 chr14 52605031 52605349 + 3 NA intron (NM_001099652, intron 3 of 6) L1MA4|LINE|L1 52354 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 273-265 chr20 61822889 61823047 + 3 NA intron (NM_001252339, intron 3 of 14) MLT2C1|LTR|ERVL -103220 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 454-199 chr3 11101101 11101282 + 3 NA Intergenic L1MB7|LINE|L1 -36047 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 759-14 chr11 50486192 50486566 + 3 NA Intergenic ALR/Alpha|Satellite|centr 77232 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 343-239 chr2 62273757 62273986 + 3 NA Intergenic MER21C|LTR|ERVL 58350 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 519-17 chr10 6007040 6007357 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -28457 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 537-125 chr2 122844539 122844735 + 3 NA Intergenic Intergenic 228844 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 523-272 chr8 89115472 89115743 + 3 NA Intergenic L1MA9|LINE|L1 642104 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 368-301 chr3 116653556 116653717 + 3 NA Intergenic Intergenic -56152 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 558-126 chr22 34059582 34059812 + 3 NA Intergenic Intergenic -136809 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 285-265 chr3 42642589 42642730 + 3 NA intron (NM_001349126, intron 16 of 18) intron (NM_001349126, intron 16 of 18) -11038 NM_145166 92999 Hs.409561 NM_145166 ENSG00000114853 ZBTB47 ZNF651 zinc finger and BTB domain containing 47 protein-coding 364-33 chr1 192306776 192306965 + 3 NA Intergenic Intergenic -10122 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 257-138 chr16 65572317 65572489 + 3 NA intron (NR_027755, intron 1 of 8) intron (NR_027755, intron 1 of 8) 3897 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 493-34 chr10 66101248 66101594 + 3 NA intron (NM_001127384, intron 14 of 17) intron (NM_001127384, intron 14 of 17) 529996 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 1075-14 chr8 69515639 69516178 + 3 NA intron (NR_156414, intron 2 of 20) MSTA-int|LTR|ERVL-MaLR 23061 NR_156415 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 907-24 chr6 156577394 156577945 + 3 NA Intergenic AluJb|SINE|Alu 198919 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 342-206 chr18 53264010 53264189 + 3 NA intron (NM_005215, intron 12 of 28) intron (NM_005215, intron 12 of 28) 26998 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 531-196 chr5 37990566 37990820 + 3 NA Intergenic L2b|LINE|L2 -35004 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 378-387 chr7 3424228 3424379 + 3 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 123051 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 669-57 chr2 160593934 160594349 + 3 NA Intergenic L1MB8|LINE|L1 -100334 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 346-5 chr1 64716830 64716983 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -28067 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 539-55 chr12 99122228 99122536 + 3 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) 29023 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 570-25 chr10 39174904 39175279 + 3 NA Intergenic ALR/Alpha|Satellite|centr 478495 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 983-3 chr11 44055164 44055765 + 3 NA intron (NM_001031854, intron 9 of 13) intron (NM_001031854, intron 9 of 13) 7483 NM_001031854 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 665-72 chr4 146586083 146586363 + 3 NA Intergenic Intergenic -52670 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 611-127 chr5 155219168 155219454 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 205556 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 454-79 chr12 122787849 122788011 + 3 NA intron (NR_027918, intron 4 of 12) Tigger9a|DNA|TcMar-Tigger 13358 NM_201435 84660 Hs.592008 NM_032573 ENSG00000130783 CCDC62 CT109|ERAP75|TSP-NY coiled-coil domain containing 62 protein-coding 395-288 chr6 63968795 63969108 + 3 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 162115 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 416-277 chr5 104867507 104867651 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -231895 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 718-35 chr18 4579071 4579429 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -123943 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 737-62 chr4 134597408 134597899 + 3 NA Intergenic L1PB1|LINE|L1 173785 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 435-35 chr10 69790424 69790686 + 3 NA Intergenic MIR|SINE|MIR -11351 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 962-17 chr4 104099429 104099830 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -379644 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 850-17 chr17 11425161 11425741 + 3 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -173019 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 453-43 chr11 99851841 99852184 + 3 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 295867 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 453-65 chr14 38013519 38013785 + 3 NA Intergenic Intergenic -111528 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 854-29 chr22 43620592 43621032 + 3 NA intron (NM_198856, intron 18 of 29) L1MEf|LINE|L1 104558 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 705-12 chr11 12038668 12039044 + 3 NA intron (NR_135109, intron 1 of 1) L1PA15|LINE|L1 7981 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 490-35 chr10 5161061 5161326 + 3 NA intron (NR_027916, intron 4 of 7) intron (NR_027916, intron 4 of 7) 23994 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 485-242 chr6 49026238 49026482 + 3 NA Intergenic L1PA16|LINE|L1 436893 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 270-10 chr1 69141331 69141488 + 3 NA intron (NR_146608, intron 3 of 4) L1PA7|LINE|L1 85511 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 309-554 chr8 108045442 108045632 + 3 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 36402 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 659-94 chr6 66450881 66451194 + 3 NA Intergenic Intergenic 663158 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 602-113 chr6 17392021 17392340 + 3 NA Intergenic Intergenic -1325 NM_001363533 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 400-323 chr7 51795547 51795826 + 3 NA Intergenic L1MC|LINE|L1 -402430 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 455-108 chr18 75979335 75979559 + 3 NA Intergenic Intergenic -143551 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 318-468 chr5 180160689 180160884 + 3 NA intron (NM_175062, intron 1 of 13) intron (NM_175062, intron 1 of 13) 48425 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 559-122 chr3 68593840 68594122 + 3 NA Intergenic Intergenic 93344 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 433-260 chr7 13006516 13006743 + 3 NA Intergenic Intergenic 318996 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 380-417 chr9 25595973 25596138 + 3 NA Intergenic L1MA10|LINE|L1 82803 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 556-191 chr6 50634522 50634824 + 3 NA Intergenic L1MA9|LINE|L1 -78871 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 507-233 chr7 68011555 68011870 + 3 NA Intergenic Intergenic -8541 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 828-13 chr12 33224099 33224636 + 3 NA Intergenic LTR16B1|LTR|ERVL 215452 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 848-42 chr6 169544834 169545213 + 3 NA intron (NR_146875, intron 19 of 20) L1MD|LINE|L1 157006 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 391-232 chr3 67921897 67922078 + 3 NA intron (NR_109992, intron 6 of 6) intron (NR_109992, intron 6 of 6) -69605 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 554-157 chr4 63002402 63002793 + 3 NA Intergenic L1ME3|LINE|L1 -840832 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 723-59 chr5 91110185 91110737 + 3 NA intron (NR_003149, intron 87 of 89) MamRep38|DNA|hAT 203941 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 484-128 chr2 62087373 62087703 + 3 NA intron (NM_001321781, intron 2 of 2) AluSq2|SINE|Alu -108577 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 257-209 chr2 133869055 133869187 + 3 NA Intergenic L1M5|LINE|L1 -250814 NM_001371457 374-257 chr3 117847995 117848181 + 3 NA Intergenic Intergenic -157163 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 393-206 chr22 23624962 23625131 + 3 NA intron (NM_016449, intron 2 of 11) intron (NM_016449, intron 2 of 11) 7275 NM_016449 51233 Hs.517466 NM_016449 ENSG00000189269 DRICH1 C22orf43|KB-208E9.1 aspartate rich 1 protein-coding 191-137 chr3 88792890 88792953 + 3 NA Intergenic L1MA2|LINE|L1 -314700 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 288-284 chr3 193763558 193763675 + 3 NA Intergenic L2a|LINE|L2 80393 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 1521-4 chr22 47987131 47988009 + 3 NA Intergenic L1MB7|LINE|L1 -286794 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 472-150 chr2 44132382 44132671 + 3 NA Intergenic Intergenic -36277 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 356-109 chr12 61287897 61288044 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 904869 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 494-84 chr16 34572046 34572232 + 3 NA Intergenic (GAATG)n|Satellite|Satellite -190659 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 280-399 chr8 36458100 36458240 + 3 NA Intergenic Intergenic -326204 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 383-300 chr5 11750918 11751094 + 3 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 153440 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 703-19 chr11 50774380 50774700 + 3 NA Intergenic ALR/Alpha|Satellite|centr 365393 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 525-70 chr14 35700355 35700535 + 3 NA intron (NM_001346245, intron 16 of 41) intron (NM_001346245, intron 16 of 41) 62486 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 330-506 chr8 37042457 37042610 + 3 NA Intergenic Intergenic 258159 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 408-205 chr3 27557917 27558079 + 3 NA Intergenic Intergenic -73614 NM_001321104 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 1080-17 chr2 185508714 185509428 + 3 NA Intergenic L1M5|LINE|L1 229648 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 586-64 chr18 48403223 48403436 + 3 NA intron (NM_001371287, intron 1 of 5) intron (NM_001371287, intron 1 of 5) 6054 NM_001371285 607-124 chr6 50585204 50585592 + 3 NA Intergenic Intergenic -128146 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 620-2 chr1 80049988 80050256 + 3 NA Intergenic Intergenic -485633 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 339-453 chr5 92972024 92972303 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 599180 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 584-58 chr18 11976073 11976537 + 3 NA Intergenic Intergenic -5202 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 508-75 chr17 33389641 33389949 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -96807 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 472-40 chr10 108618658 108618826 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -549449 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 644-90 chr6 165958602 165958925 + 3 NA intron (NR_026860, intron 1 of 1) (AAGA)n|Simple_repeat|Simple_repeat -28788 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 351-76 chr11 84077260 84077433 + 3 NA intron (NM_001142699, intron 10 of 27) L2b|LINE|L2 195934 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 387-139 chr17 30061782 30061975 + 3 NA intron (NM_198529, intron 14 of 22) intron (NM_198529, intron 14 of 22) -54929 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 485-110 chr18 22405549 22405729 + 3 NA Intergenic L1MC5a|LINE|L1 12276 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 1199 chr10 83719678 83720361 + 3 NA Intergenic Intergenic -42930 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 796-40 chr4 85035364 85035884 + 3 NA Intergenic Intergenic 68140 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 523-213 chr5 8794570 8794859 + 3 NA Intergenic Intergenic -45018 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 481-34 chr10 64454388 64454629 + 3 NA Intergenic AluJr4|SINE|Alu -371020 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 471-168 chr3 89065557 89065794 + 3 NA Intergenic Intergenic -41946 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 440-155 chr3 21176924 21177093 + 3 NA Intergenic L1MA5|LINE|L1 -228718 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 360-188 chr19 17292948 17293092 + 3 NA intron (NM_024527, intron 4 of 4) intron (NM_024527, intron 4 of 4) 10405 NM_024527 79575 Hs.515664 NM_024527 ENSG00000127220 ABHD8 - abhydrolase domain containing 8 protein-coding 368-209 chr18 38062155 38062346 + 3 NA Intergenic Intergenic 405115 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 498-57 chr11 94723485 94723666 + 3 NA intron (NR_135096, intron 1 of 6) intron (NR_135096, intron 1 of 6) 16780 NR_135094 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 469-255 chr6 164211228 164211410 + 3 NA Intergenic Intergenic -539835 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 474-218 chr4 108896480 108896668 + 3 NA intron (NM_198721, intron 15 of 36) intron (NM_198721, intron 15 of 36) -133521 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 343-232 chr2 41791963 41792118 + 3 NA Intergenic Intergenic -85515 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 590-168 chr8 115159647 115159982 + 3 NA Intergenic AluJo|SINE|Alu 508199 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 476-160 chr20 32794781 32794975 + 3 NA intron (NM_006892, intron 10 of 22) intron (NM_006892, intron 10 of 22) 15026 NM_175850 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 249-190 chr2 51568852 51568954 + 3 NA intron (NR_135237, intron 5 of 10) L1MEc|LINE|L1 536302 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 1403-2 chr10 94031556 94032617 + 3 NA exon (NM_016341, exon 2 of 33) exon (NM_016341, exon 2 of 33) 38155 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 508-160 chr3 178866705 178867032 + 3 NA Intergenic Intergenic -6463 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 503-49 chr11 25850877 25851063 + 3 NA Intergenic L1M3c|LINE|L1 -338153 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 552-82 chr16 86450167 86450394 + 3 NA Intergenic Intergenic 58580 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 655-34 chr13 86550374 86550713 + 3 NA Intergenic Intergenic -361377 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 593-21 chr11 15861580 15861837 + 3 NA Intergenic Intergenic 107913 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 440-210 chr5 163897719 163897897 + 3 NA Intergenic Intergenic 392189 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 604-14 chr10 41785420 41785751 + 3 NA Intergenic ALR/Alpha|Satellite|centr 582460 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 240-360 chr5 131931051 131931189 + 3 NA intron (NM_001303622, intron 5 of 12) L1MB1|LINE|L1 14543 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 534-97 chr18 47516599 47516828 + 3 NA intron (NR_147192, intron 1 of 2) L1MB7|LINE|L1 136217 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 233-144 chr18 72265438 72265598 + 3 NA Intergenic Intergenic 278824 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 597-127 chr7 66304887 66305197 + 3 NA intron (NM_003596, intron 3 of 5) AluJr|SINE|Alu 95366 NR_026873 285908 Hs.50755 NM_181722 ENSG00000179406 LINC00174 NCRNA00174 long intergenic non-protein coding RNA 174 ncRNA 523-48 chr10 111393684 111393978 + 3 NA Intergenic Intergenic 279540 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 511-185 chr4 24176698 24176917 + 3 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) -286760 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 468-83 chr14 71854346 71854527 + 3 NA Intergenic MIRb|SINE|MIR -77735 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 898-21 chr2 21154099 21154608 + 3 NA Intergenic L2c|LINE|L2 30367 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 787-40 chr5 136644540 136645014 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -279301 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 590-93 chr20 44993232 44993584 + 3 NA intron (NM_001352385, intron 5 of 11) intron (NM_001352385, intron 5 of 11) 26896 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 772-28 chr2 16860351 16860675 + 3 NA Intergenic Intergenic -194679 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 426-284 chr8 24513459 24513669 + 3 NA intron (NR_125809, intron 2 of 4) intron (NR_125809, intron 2 of 4) 1304 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 447-73 chr14 52238720 52238970 + 3 NA Intergenic Intergenic -28853 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 311-118 chr13 54273914 54274093 + 3 NA Intergenic Intergenic 38045 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 425-93 chr14 95907636 95907861 + 3 NA intron (NR_132398, intron 2 of 2) MER52C|LTR|ERV1 30976 NR_132398 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 602-21 chr11 55791251 55791544 + 3 NA Intergenic Intergenic -4159 NM_001004735 219436 Hs.553622 NM_001004735 ENSG00000186113 OR5D14 OR11-141|OR11-150 olfactory receptor family 5 subfamily D member 14 protein-coding 354-323 chr4 52173594 52173785 + 3 NA Intergenic L2b|LINE|L2 122385 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 453-295 chr9 13314613 13314853 + 3 NA Intergenic Intergenic -35020 NM_001330637 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 347-477 chr7 81603277 81603443 + 3 NA intron (NR_126025, intron 4 of 10) L2c|LINE|L2 22856 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 477-186 chr22 26306577 26306753 + 3 NA intron (NM_001184776, intron 6 of 14) intron (NM_001184776, intron 6 of 14) -122595 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 513-139 chr2 119113352 119113530 + 3 NA Intergenic Intergenic 45310 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 367-390 chr6 53501535 53501714 + 3 NA intron (NM_001498, intron 12 of 15) intron (NM_001498, intron 12 of 15) 43477 NM_001498 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 822-58 chr7 92928185 92928592 + 3 NA Intergenic MER124|DNA?|DNA? -91761 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 830-51 chr8 46663641 46664054 + 3 NA Intergenic AluJo|SINE|Alu -46204 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 472-323 chr8 116458602 116458870 + 3 NA Intergenic Intergenic -133677 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 405-327 chr8 112369033 112369261 + 3 NA intron (NM_001363185, intron 34 of 66) intron (NM_001363185, intron 34 of 66) -274346 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 535-80 chr14 87230736 87230991 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 325085 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 410-266 chr6 140289072 140289251 + 3 NA Intergenic Intergenic 83909 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 421-212 chr4 55141596 55141848 + 3 NA Intergenic Intergenic -16127 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 319-11 chr1 82352374 82352604 + 3 NA Intergenic L2c|LINE|L2 550036 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 549-120 chr2 149573278 149573732 + 3 NA intron (NM_015702, intron 6 of 7) LTR54B|LTR|ERV1 -13853 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 260-396 chr7 8361355 8361492 + 3 NA Intergenic L2a|LINE|L2 -72186 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 526-58 chr12 38550578 38550897 + 3 NA Intergenic Intergenic 233963 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 467-11 chr1 108882544 108882782 + 3 NA intron (NM_001321038, intron 1 of 14) intron (NM_001321038, intron 1 of 14) 5678 NM_013296 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 241-92 chr12 125720963 125721099 + 3 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 98579 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 971-13 chr2 104611064 104611640 + 3 NA Intergenic L1P2|LINE|L1 -100843 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 479-74 chr15 56120337 56120598 + 3 NA intron (NM_001370561, intron 7 of 11) L1MA3|LINE|L1 69465 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 828-39 chr5 105274329 105274929 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie 175155 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 564-65 chr15 94935110 94935319 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 79851 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 458-253 chr8 80523096 80523293 + 3 NA 3' UTR (NM_023929, exon 7 of 7) 3' UTR (NM_023929, exon 7 of 7) 36968 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 576-95 chr2 213526122 213526532 + 3 NA intron (NR_047660, intron 9 of 14) HAL1|LINE|L1 -231740 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 796-29 chr2 164944835 164945202 + 3 NA intron (NM_001351539, intron 1 of 8) intron (NM_001351539, intron 1 of 8) 10507 NM_001351537 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 389-216 chr22 16987747 16987918 + 3 NA intron (NM_001037814, intron 3 of 9) intron (NM_001037814, intron 3 of 9) 20390 NM_001037814 128954 Hs.434113 NM_001037814 ENSG00000215568 GAB4 - GRB2 associated binding protein family member 4 protein-coding 244-201 chr20 43890759 43890927 + 3 NA Intergenic L1MB7|LINE|L1 -3875 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 823-17 chr17 70059612 70060106 + 3 NA intron (NR_104130, intron 1 of 1) MIRb|SINE|MIR 8588 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 298-129 chr14 86627884 86628056 + 3 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -277808 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 310-423 chr5 120562697 120562928 + 3 NA intron (NM_001308088, intron 1 of 3) L1MA2|LINE|L1 31348 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 548-167 chr4 80906287 80906575 + 3 NA intron (NM_152770, intron 4 of 5) THE1C-int|LTR|ERVL-MaLR -124277 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 453-281 chr8 84930704 84930953 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity -176410 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 689-104 chrX 37393813 37394232 + 3 NA intron (NM_000950, intron 2 of 4) MIRc|SINE|MIR 44658 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 590-40 chr13 88435756 88436083 + 3 NA Intergenic L1MA9|LINE|L1 -104910 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 589-130 chr5 128271482 128271735 + 3 NA intron (NM_001999, intron 62 of 64) intron (NM_001999, intron 62 of 64) 187842 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 393-158 chr2 49028804 49029019 + 3 NA intron (NM_000145, intron 2 of 9) intron (NM_000145, intron 2 of 9) -30692 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 593-139 chr7 82963483 82963797 + 3 NA intron (NM_033026, intron 4 of 24) Charlie7|DNA|hAT-Charlie 199244 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 336-53 chr10 5992483 5992693 + 3 NA Intergenic L1MEf|LINE|L1 -13847 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 427-271 chr8 135062720 135062997 + 3 NA Intergenic Intergenic -171273 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 384-178 chr2 118239015 118239211 + 3 NA Intergenic AluJo|SINE|Alu -52727 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 384-365 chr8 55391770 55391959 + 3 NA intron (NM_052898, intron 2 of 2) L1MC5a|LINE|L1 63457 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 417-121 chr19 6983635 6983929 + 3 NA intron (NR_024075, intron 4 of 15) MLT1F2|LTR|ERVL-MaLR 7064 NR_024075 326342 Hs.688043 NM_001080498 ENSG00000268758 ADGRE4P EMR4|EMR4P|FIRE|GPR127|PGR16 adhesion G protein-coupled receptor E4, pseudogene pseudo 427-269 chr8 128971978 128972152 + 3 NA Intergenic Intergenic -6064 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 304-447 chr5 167590218 167590354 + 3 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 16627 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 453-303 chr9 85283668 85283923 + 3 NA Intergenic Intergenic 458234 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 442-11 chr1 104604124 104604302 + 3 NA Intergenic L1MA9|LINE|L1 531190 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 360-258 chr20 4332891 4333102 + 3 NA Intergenic LTR16C|LTR|ERVL -83709 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 421-65 chr13 66219137 66219361 + 3 NA TTS (NR_039853) TTS (NR_039853) 999 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 415-249 chr7 19470981 19471219 + 3 NA Intergenic Intergenic 234336 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 479-71 chr15 26339491 26339762 + 3 NA Intergenic Intergenic 223813 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 488-208 chr5 45358977 45359252 + 3 NA intron (NM_021072, intron 4 of 7) LTR49|LTR|ERV1 337266 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 496-227 chr5 179174101 179174309 + 3 NA intron (NM_014244, intron 5 of 21) L1ME4a|LINE|L1 113832 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 493-135 chr2 23825557 23825827 + 3 NA intron (NR_125717, intron 15 of 28) intron (NR_125717, intron 15 of 28) 101431 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 625-59 chr20 31064402 31064732 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -193097 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 545-136 chr22 39876566 39876884 + 3 NA intron (NM_152512, intron 2 of 6) L1ME3|LINE|L1 17035 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 374-321 chr5 123729559 123729690 + 3 NA Intergenic L1MA2|LINE|L1 184207 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 810-18 chr19 24363931 24364373 + 3 NA Intergenic ALR/Alpha|Satellite|centr -200705 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 777-39 chr20 59677808 59678214 + 3 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) 1350 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 603-4 chr1 80615240 80615446 + 3 NA intron (NR_125940, intron 2 of 3) L1PA15-16|LINE|L1 -25944 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 864-39 chr6 40253942 40254507 + 3 NA Intergenic Intergenic 101782 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 456-29 chr10 25851071 25851397 + 3 NA Intergenic Intergenic 82476 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 578-93 chr2 142488799 142489249 + 3 NA Intergenic Intergenic -357323 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 460-74 chr13 42332694 42333020 + 3 NA Intergenic L1ME3D|LINE|L1 60705 NM_016248 11215 Hs.105105 NM_016248 ENSG00000023516 AKAP11 AKAP-11|AKAP220|PPP1R44|PRKA11 A-kinase anchoring protein 11 protein-coding 446-227 chr5 2761880 2762110 + 3 NA Intergenic L1MB7|LINE|L1 9864 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 391-7 chr1 64242092 64242245 + 3 NA intron (NM_001366232, intron 8 of 9) intron (NM_001366232, intron 8 of 9) 38545 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 527-67 chr13 21678721 21678907 + 3 NA intron (NM_002010, intron 1 of 2) intron (NM_002010, intron 1 of 2) 7741 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 712-97 chr8 131014011 131014416 + 3 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 26696 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 455-124 chr2 77607379 77607604 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -85058 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 484-45 chr12 41809676 41809871 + 3 NA Intergenic L1PA16|LINE|L1 45584 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 475-163 chr20 59794500 59794773 + 3 NA intron (NM_080672, intron 7 of 12) L1M2|LINE|L1 73426 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1092-20 chr9 79220625 79221191 + 3 NA Intergenic Intergenic -75242 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 441-65 chr13 47074696 47074952 + 3 NA Intergenic L1PA15|LINE|L1 -177748 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 382-33 chr10 52471593 52471774 + 3 NA Intergenic Intergenic -1150 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 434-221 chr5 40164795 40165078 + 3 NA Intergenic L1PA16|LINE|L1 112645 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 387-125 chr16 5012232 5012429 + 3 NA intron (NM_014692, intron 15 of 15) intron (NM_014692, intron 15 of 15) -21372 NR_038913 100507589 Hs.729936 NR_038913 NAGPA-AS1 - NAGPA antisense RNA 1 ncRNA 600-127 chr8 68903553 68903864 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 200482 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 289-185 chr18 5323198 5323321 + 3 NA Intergenic Intergenic -26206 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 583-88 chr2 71239887 71240231 + 3 NA Intergenic Intergenic -12956 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 469-92 chr15 57990355 57990554 + 3 NA intron (NM_170696, intron 6 of 11) L1ME3G|LINE|L1 23569 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 964-35 chrX 67050871 67051461 + 3 NA Intergenic Intergenic -411868 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 1174-2 chr14 56841895 56842557 + 3 NA intron (NR_146411, intron 2 of 2) MER58B|DNA|hAT-Charlie 29068 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 390-100 chr14 62366677 62366825 + 3 NA Intergenic MER89-int|LTR|ERV1 -226778 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 542-64 chr15 25096383 25096744 + 3 NA intron (NR_146177, intron 47 of 147) L1MDb|LINE|L1 -1099 NR_003339 100033436 NR_003339 ENSG00000252326 SNORD116-25 HBII-85-25 small nucleolar RNA, C/D box 116-25 snoRNA 524-98 chr18 55989056 55989373 + 3 NA Intergenic Intergenic -53064 NR_146511 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 654-114 chr7 39144303 39144639 + 3 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -130904 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 662-56 chr21 30630806 30631233 + 3 NA Intergenic L1MA4|LINE|L1 -4187 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 215-65 chr12 45002349 45002456 + 3 NA Intergenic L2a|LINE|L2 48697 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 505-123 chr19 29550884 29551080 + 3 NA intron (NM_001146339, intron 4 of 4) intron (NM_001146339, intron 4 of 4) 24398 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 685-4 chr1 218747631 218748091 + 3 NA intron (NR_031644, intron 4 of 6) L1MA3|LINE|L1 170650 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 485-97 chr16 73519275 73519501 + 3 NA Intergenic Intergenic 132583 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 502-289 chrX 45964206 45964479 + 3 NA Intergenic L1M4c|LINE|L1 -112852 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 395-289 chr6 78791514 78791734 + 3 NA Intergenic L1PA13|LINE|L1 -75927 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 452-96 chr15 100754041 100754239 + 3 NA Intergenic L1MC5a|LINE|L1 -95612 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 537-236 chr7 55328317 55328525 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -37027 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 801-22 chr17 70988399 70988778 + 3 NA Intergenic Intergenic 213591 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 494-180 chr3 94474083 94474344 + 3 NA Intergenic Intergenic 411152 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 394-88 chr12 72849323 72849562 + 3 NA Intergenic L2b|LINE|L2 -309748 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 825-7 chr13 107021196 107021526 + 3 NA Intergenic Intergenic 299602 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 454-86 chr13 105089104 105089367 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -376632 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 438-224 chr5 97321715 97321925 + 3 NA Intergenic Intergenic -138573 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 410-57 chr11 80340404 80340590 + 3 NA Intergenic L1M5|LINE|L1 422306 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 914-16 chr2 129515851 129516270 + 3 NA Intergenic L1PA15|LINE|L1 -242169 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 764-61 chr6 140020389 140020833 + 3 NA intron (NR_121623, intron 1 of 1) MSTA-int|LTR|ERVL-MaLR -29350 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 249-246 chr21 30895193 30895377 + 3 NA Intergenic L1M6|LINE|L1 -13705 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 220-373 chr8 103653909 103653990 + 3 NA intron (NM_001348488, intron 3 of 25) intron (NM_001348488, intron 3 of 25) -152039 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 428-49 chr12 55030459 55030748 + 3 NA TTS (NM_021191) TTS (NM_021191) 10629 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 663-112 chr8 33996613 33996945 + 3 NA Intergenic Intergenic -396673 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 458-92 chr16 906805 907103 + 3 NA intron (NR_147885, intron 4 of 11) L1M5|LINE|L1 -14079 NR_110945 101929387 Hs.737087 NR_110945 ENSG00000260439 LMF1-AS1 LA16c-366D3.1 LMF1 antisense RNA 1 ncRNA 366-48 chr10 57514701 57514920 + 3 NA Intergenic Intergenic -210251 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 568-141 chr3 177309960 177310212 + 3 NA intron (NR_047465, intron 1 of 1) L1ME1|LINE|L1 15644 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 533-52 chr14 60952967 60953270 + 3 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 27961 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 430-142 chr2 46786193 46786352 + 3 NA Intergenic L1ME2|LINE|L1 -30396 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 330-290 chr2 133107947 133108144 + 3 NA intron (NM_207481, intron 6 of 17) L3b|LINE|CR1 -158150 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 1973-2 chr21 29200284 29201232 + 3 NA intron (NR_027072, intron 1 of 1) L1M4|LINE|L1 7264 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 474-88 chr14 85910356 85910523 + 3 NA Intergenic Intergenic -24239 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 478-176 chr3 7584886 7585149 + 3 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -49733 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 275-150 chr18 653500 653665 + 3 NA intron (NM_001012716, intron 1 of 1) Charlie2b|DNA|hAT-Charlie -4071 NM_001354867 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 783-39 chr2 79992363 79992831 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -126014 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 560-51 chr14 54245853 54246209 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -150837 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 386-300 chr5 125237442 125237742 + 3 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 200761 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 533-136 chr3 97816152 97816383 + 3 NA Intergenic Intergenic -5744 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 443-110 chr15 82035847 82036033 + 3 NA Intergenic MIR|SINE|MIR 10078 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 725-7 chr1 245206843 245207211 + 3 NA intron (NR_151721, intron 4 of 4) intron (NR_151721, intron 4 of 4) 27490 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 524-134 chr20 60375765 60375950 + 3 NA Intergenic L1MA4|LINE|L1 67383 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 724-47 chr22 48329866 48330239 + 3 NA Intergenic Intergenic 55688 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 608-94 chr22 47420200 47420632 + 3 NA Intergenic Intergenic 66695 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 729-43 chr2 155089117 155089455 + 3 NA Intergenic L1PA15|LINE|L1 390591 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 506-128 chr2 34820482 34820760 + 3 NA Intergenic L1M5|LINE|L1 143064 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 397-67 chr12 72877319 72877537 + 3 NA Intergenic L1MB3|LINE|L1 -281762 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 309-77 chr11 36179032 36179199 + 3 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -101214 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 447-52 chr12 2548151 2548357 + 3 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 123966 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 480-284 chr7 136456176 136456354 + 3 NA Intergenic Intergenic -412387 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 338-392 chr4 113509782 113510045 + 3 NA intron (NM_001221, intron 12 of 18) intron (NM_001221, intron 12 of 18) 217074 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 615-31 chr14 48957279 48957616 + 3 NA Intergenic MLT-int|LTR|ERVL-MaLR 628933 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 522-151 chr2 208550633 208550812 + 3 NA intron (NR_136588, intron 1 of 5) L1MB1|LINE|L1 8080 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 453-15 chr1 193818854 193819074 + 3 NA Intergenic Intergenic 514219 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 610-4 chr1 74021627 74021970 + 3 NA Intergenic Intergenic 176378 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 743-64 chr5 26337361 26337822 + 3 NA Intergenic L1MA7|LINE|L1 700995 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 384-165 chr2 54052419 54052666 + 3 NA intron (NM_001320586, intron 3 of 6) intron (NM_001320586, intron 3 of 6) -63073 NM_001320589 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 511-268 chr8 128308072 128308297 + 3 NA Intergenic Intergenic 158068 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 446-135 chr19 28847539 28847806 + 3 NA Intergenic Intergenic -117459 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 775-15 chr11 22134421 22134836 + 3 NA Intergenic L1M4c|LINE|L1 -58457 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 498-168 chr3 64571081 64571330 + 3 NA intron (NM_001318781, intron 27 of 38) MIRb|SINE|MIR 9859 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 576-173 chr8 120671340 120671637 + 3 NA intron (NM_021021, intron 2 of 6) MLT1C|LTR|ERVL-MaLR -89765 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 450-15 chr1 194496101 194496308 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1191459 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 832-27 chr4 30598856 30599340 + 3 NA Intergenic LTR82B|LTR|ERVL -121271 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 499-234 chr6 153594245 153594516 + 3 NA Intergenic Intergenic -416116 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 418-180 chr4 45803056 45803262 + 3 NA Intergenic MIR|SINE|MIR 320895 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 1007 chr1 42295946 42296641 + 3 NA intron (NM_001198850, intron 2 of 12) L1PB4|LINE|L1 38662 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 621-54 chr2 56790208 56790641 + 3 NA Intergenic L2a|LINE|L2 -604654 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 964-6 chr12 68593550 68594097 + 3 NA Intergenic L1ME1|LINE|L1 -17076 NM_015646 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 648-146 chr8 114476959 114477354 + 3 NA Intergenic L1MA3|LINE|L1 -1040217 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 795-55 chr8 49007708 49008217 + 3 NA Intergenic L1MDa|LINE|L1 -46374 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 796-9 chr11 62224696 62225092 + 3 NA Intergenic MER51-int|LTR|ERV1 16221 NM_002407 4246 Hs.97644 NM_002407 ENSG00000124939 SCGB2A1 LPHC|LPNC|MGB2|UGB3 secretoglobin family 2A member 1 protein-coding 500-168 chr20 45177369 45177772 + 3 NA Intergenic Intergenic 2668 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 320-395 chr4 80733021 80733162 + 3 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -297617 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 826-65 chr8 128432814 128433236 + 3 NA intron (NR_121672, intron 2 of 7) L1PA16|LINE|L1 131654 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 481-171 chr20 15241342 15241670 + 3 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 44666 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 297-412 chr6 97478886 97478999 + 3 NA intron (NR_110757, intron 1 of 4) L1MB2|LINE|L1 173356 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 551-109 chr20 59482303 59482670 + 3 NA Intergenic Intergenic -95023 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 500-136 chr2 99053153 99053388 + 3 NA intron (NR_146001, intron 15 of 18) L1MA9|LINE|L1 87910 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 416-46 chr10 68115596 68115768 + 3 NA intron (NM_001256268, intron 2 of 23) L2a|LINE|L2 6194 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 500-250 chr6 82799585 82799895 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 266101 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 362-384 chr6 135643738 135643937 + 3 NA intron (NR_152842, intron 3 of 5) L1MEf|LINE|L1 146036 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 440-120 chr2 74749334 74749504 + 3 NA Intergenic Intergenic -83236 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 477-46 chr10 82608031 82608301 + 3 NA intron (NR_163253, intron 3 of 10) L1MC2|LINE|L1 -375246 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 350-527 chr8 113343713 113343879 + 3 NA intron (NM_001363185, intron 1 of 66) AluY|SINE|Alu 33356 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 412-93 chr14 61755619 61755825 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -4625 NR_144368 105370526 Hs.661638 NR_144368 ENSG00000258667 HIF1A-AS3 - HIF1A antisense RNA 3 ncRNA 475-196 chr4 27470046 27470372 + 3 NA Intergenic L2a|LINE|L2 252730 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 412-161 chr2 98243871 98244086 + 3 NA intron (NM_001345864, intron 13 of 21) intron (NM_001345864, intron 13 of 21) 94445 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 1101-11 chr4 72274557 72275170 + 3 NA Intergenic Intergenic 235731 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 354-102 chr12 23379135 23379328 + 3 NA Intergenic L1PA17|LINE|L1 203595 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 463-13 chr1 91061800 91062032 + 3 NA Intergenic Intergenic -39661 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 804-34 chr2 239198626 239198994 + 3 NA intron (NM_006037, intron 3 of 26) intron (NM_006037, intron 3 of 26) -3353 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 635-77 chr4 43459429 43459677 + 3 NA intron (NR_146993, intron 1 of 2) intron (NR_146993, intron 1 of 2) 32990 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 620-26 chr12 57702859 57703238 + 3 NA intron (NM_001017956, intron 5 of 13) L1MB4|LINE|L1 8916 NM_006812 10956 Hs.527861 NM_006812 ENSG00000135506 OS9 ERLEC2|OS-9 OS9 endoplasmic reticulum lectin protein-coding 748-46 chr19 47801147 47801490 + 3 NA TTS (NM_198479) TTS (NM_198479) 2286 NM_198479 284355 Hs.629812 NM_198479 ENSG00000178928 TPRX1 TPRX tetrapeptide repeat homeobox 1 protein-coding 788-47 chr8 15524996 15525453 + 3 NA Intergenic MER87B|LTR|ERV1 -14863 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 624-66 chr2 86649765 86650163 + 3 NA intron (NM_001198954, intron 2 of 7) L1MEc|LINE|L1 -26087 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 580-195 chr8 43755883 43756114 + 3 NA Intergenic ALR/Alpha|Satellite|centr 463556 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 711-3 chr1 102284669 102285175 + 3 NA Intergenic L1MA1|LINE|L1 -287688 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 402-99 chr15 80323223 80323472 + 3 NA intron (NR_033833, intron 1 of 2) L1ME1|LINE|L1 18458 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 479-42 chr12 47443166 47443381 + 3 NA Intergenic Intergenic 28265 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 403-25 chr10 36487186 36487388 + 3 NA Intergenic L1ME3B|LINE|L1 -638570 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 361-399 chr6 143112894 143113062 + 3 NA intron (NM_001366344, intron 2 of 6) L4_B_Mam|LINE|RTE-X -13161 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 507-125 chr2 80681422 80681616 + 3 NA Intergenic Intergenic 368140 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 562-28 chr10 130275520 130275765 + 3 NA Intergenic L1ME4b|LINE|L1 139233 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 545-20 chr10 33625117 33625431 + 3 NA Intergenic Intergenic 147406 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 589-162 chr8 131537250 131537601 + 3 NA Intergenic L1MB7|LINE|L1 -366668 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 551-16 chr10 52456228 52456549 + 3 NA intron (NR_120641, intron 2 of 3) L2b|LINE|L2 -1116 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 418-81 chr15 96565549 96565722 + 3 NA Intergenic Intergenic 216019 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 860-3 chr10 11303738 11304236 + 3 NA intron (NM_001025076, intron 9 of 13) intron (NM_001025076, intron 9 of 13) 40687 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 405-237 chr4 189042174 189042328 + 3 NA Intergenic Intergenic 265594 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 595-45 chr13 91534042 91534278 + 3 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 135539 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 367-97 chr12 107041626 107041770 + 3 NA intron (NM_004075, intron 1 of 12) intron (NM_004075, intron 1 of 12) 51851 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 647-44 chr19 30753653 30754015 + 3 NA Intergenic MIRb|SINE|MIR 381450 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 454-300 chr7 109248692 109248926 + 3 NA Intergenic Intergenic -364222 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 482-62 chr12 17405932 17406255 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 182985 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 574-99 chr20 54504361 54504691 + 3 NA intron (NM_018431, intron 1 of 7) MER113|DNA|hAT-Charlie 28933 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 694-7 chr1 218933862 218934319 + 3 NA intron (NR_031644, intron 6 of 6) (TA)n|Simple_repeat|Simple_repeat -15579 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 439-211 chr4 100327970 100328174 + 3 NA Intergenic Intergenic 67175 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 389-241 chr3 118976692 118976860 + 3 NA intron (NM_001353325, intron 1 of 7) intron (NM_001353325, intron 1 of 7) 33700 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 548-233 chr8 83376344 83376606 + 3 NA Intergenic MER58B|DNA|hAT-Charlie -27283 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 532-237 chr7 19043943 19044130 + 3 NA Intergenic Intergenic 73600 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 732-11 chr10 65365782 65366324 + 3 NA Intergenic Intergenic -205372 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 424-261 chr7 70248779 70248977 + 3 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 650403 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 922-3 chr1 163740088 163740762 + 3 NA Intergenic L1MA2|LINE|L1 -317234 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 827-10 chr12 117245811 117246354 + 3 NA intron (NM_001204213, intron 17 of 27) intron (NM_001204213, intron 17 of 27) -55612 NM_033624 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 1116-11 chr3 180505930 180506640 + 3 NA Intergenic Intergenic 92112 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 336-32 chr1 115244295 115244441 + 3 NA Intergenic L1ME3D|LINE|L1 -38666 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 696-6 chr1 99037421 99037856 + 3 NA intron (NR_033940, intron 1 of 2) THE1B|LTR|ERVL-MaLR -32777 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 450-274 chr7 12865678 12865888 + 3 NA Intergenic L1M1|LINE|L1 178150 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 434-234 chr5 141369076 141369268 + 3 NA intron (NM_018918, intron 1 of 3) intron (NM_018918, intron 1 of 3) -1070 NM_032097 56102 Hs.368160 NM_018924 ENSG00000262209 PCDHGB3 PCDH-GAMMA-B3 protocadherin gamma subfamily B, 3 protein-coding 810-29 chr20 51271640 51272204 + 3 NA Intergenic Intergenic 181055 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 486-21 chr1 241685775 241685986 + 3 NA intron (NM_001367482, intron 7 of 27) intron (NM_001367482, intron 7 of 27) 33599 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 687-3 chr1 31194803 31195088 + 3 NA intron (NM_024522, intron 1 of 6) AluSg|SINE|Alu 44942 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 488-268 chr8 63241266 63241556 + 3 NA Intergenic Intergenic 72408 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 424-8 chr1 106581744 106581967 + 3 NA Intergenic L1PREC2|LINE|L1 -236384 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 708-38 chr2 126942405 126942839 + 3 NA Intergenic Intergenic 43732 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 545-193 chr5 124010193 124010445 + 3 NA Intergenic Intergenic 428201 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 630-71 chr20 9845328 9845598 + 3 NA Intergenic L1MD2|LINE|L1 -6387 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 483-294 chrX 77239411 77239653 + 3 NA Intergenic L1MA2|LINE|L1 -207857 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 719-12 chr11 21092601 21093049 + 3 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 423239 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 683-90 chr8 100966254 100966565 + 3 NA Intergenic AluSc|SINE|Alu -13027 NM_003406 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 614-78 chr3 8252218 8252513 + 3 NA intron (NR_033378, intron 3 of 3) L1PREC2|LINE|L1 -236058 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 587-112 chr4 23539961 23540321 + 3 NA Intergenic Intergenic 341151 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 307-255 chr2 175343034 175343145 + 3 NA Intergenic L1MA4A|LINE|L1 -161379 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 499-137 chr2 215259767 215260114 + 3 NA Intergenic Intergenic -52119 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 498-127 chr2 106326306 106326626 + 3 NA Intergenic L1ME4b|LINE|L1 -43279 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 456-292 chr7 11488295 11488555 + 3 NA intron (NM_015204, intron 6 of 26) MIRc|SINE|MIR 343773 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 420-2 chr1 18436970 18437123 + 3 NA Intergenic Intergenic -43884 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 475-122 chr2 27991368 27991604 + 3 NA intron (NM_199193, intron 5 of 13) L1MB7|LINE|L1 -4881 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 618-36 chr14 57767534 57767908 + 3 NA intron (NR_159373, intron 1 of 10) L1MD|LINE|L1 97278 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 439-47 chr11 24689680 24689872 + 3 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 192723 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 1307-3 chr12 55573196 55573672 + 3 NA promoter-TSS (NM_001258285) promoter-TSS (NM_001258285) -981 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 386-114 chr15 50131548 50131806 + 3 NA Intergenic Intergenic -12444 NR_073596 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 399-120 chr17 61085760 61085990 + 3 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 281829 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 562-74 chr16 68594929 68595124 + 3 NA Intergenic AluSz|SINE|Alu -50284 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 474-246 chr5 166473565 166473817 + 3 NA Intergenic Intergenic 452679 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 454-324 chr8 129450942 129451168 + 3 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 33087 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 546-53 chr12 47516015 47516280 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 101139 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 503-234 chr5 82246980 82247166 + 3 NA intron (NM_031482, intron 5 of 7) L1M4a1|LINE|L1 31281 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 412-175 chr2 183080225 183080523 + 3 NA intron (NR_135688, intron 1 of 2) intron (NR_135688, intron 1 of 2) 1627 NM_001321519 142679 Hs.132237 NM_080876 ENSG00000162999 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 466-131 chr2 103555422 103555697 + 3 NA Intergenic L1M1|LINE|L1 -571130 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 569-131 chr4 34063873 34064207 + 3 NA Intergenic Intergenic -24147 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 642-50 chr19 51917390 51917837 + 3 NA Intergenic Intergenic -9859 NM_024840 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 595-66 chr17 33358459 33358740 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -65611 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 515-169 chr3 164029518 164029824 + 3 NA Intergenic Intergenic 141885 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 297-203 chr2 24544727 24544845 + 3 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) -39691 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 658-41 chr13 103262892 103263368 + 3 NA Intergenic L1M2|LINE|L1 -162070 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 571-157 chr7 94853511 94853730 + 3 NA Intergenic L1MA5A|LINE|L1 -53974 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 369-457 chrX 94078884 94079062 + 3 NA Intergenic L1MA4|LINE|L1 404767 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 414-278 chr5 164891158 164891354 + 3 NA Intergenic Intergenic 420977 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 775-68 chr5 98384672 98385218 + 3 NA Intergenic L1M1|LINE|L1 -223706 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 467-51 chr11 82092754 82093042 + 3 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -202062 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 311-167 chr15 99969467 99969594 + 3 NA Intergenic L2|LINE|L2 162507 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 511-81 chr15 95224728 95224920 + 3 NA Intergenic MER31B|LTR|ERV1 102276 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 308-373 chr5 15956877 15957031 + 3 NA Intergenic Intergenic 21772 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 473-245 chr6 122223425 122223613 + 3 NA Intergenic Intergenic -176032 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 882-20 chr19 44426430 44426865 + 3 NA non-coding (NR_103551, exon 6 of 6) non-coding (NR_103551, exon 6 of 6) 21825 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 475-245 chr6 144902450 144902621 + 3 NA Intergenic L1MB5|LINE|L1 496880 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 252-198 chr2 85288104 85288224 + 3 NA intron (NM_031283, intron 4 of 11) intron (NM_031283, intron 4 of 11) 39825 NM_001206841 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 300-26 chr1 203446236 203446462 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -29457 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 307-176 chr16 64006578 64006769 + 3 NA Intergenic Intergenic 1115390 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 368-345 chr4 177816817 177817002 + 3 NA intron (NR_108092, intron 1 of 1) L1ME2|LINE|L1 88152 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 758-65 chr5 110069755 110070076 + 3 NA Intergenic L1PA13|LINE|L1 186733 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 805-21 chr2 43104878 43105397 + 3 NA Intergenic Intergenic -2692 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 609-72 chr21 33075167 33075430 + 3 NA Intergenic Intergenic 5157 NM_138983 116448 Hs.56663 NM_138983 ENSG00000184221 OLIG1 BHLHB6|BHLHE21 oligodendrocyte transcription factor 1 protein-coding 631-76 chr20 40406318 40406605 + 3 NA Intergenic Intergenic 282775 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 609-113 chr5 145485078 145485380 + 3 NA Intergenic L2a|LINE|L2 350113 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 445-149 chr20 9476552 9476729 + 3 NA intron (NM_182797, intron 35 of 35) intron (NM_182797, intron 35 of 35) -37718 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 689-91 chr7 13036972 13037311 + 3 NA Intergenic Intergenic 349508 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 607-14 chr1 212030345 212030781 + 3 NA intron (NM_015434, intron 1 of 19) AluSq2|SINE|Alu -4990 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 805-32 chr4 33097667 33098018 + 3 NA Intergenic FordPrefect|DNA|hAT-Tip100 746804 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 403-99 chr14 66581791 66582040 + 3 NA intron (NM_001024218, intron 1 of 21) L1MA8|LINE|L1 74508 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 640-57 chr2 13296392 13296840 + 3 NA Intergenic Intergenic -289603 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 304-233 chr2 2073326 2073454 + 3 NA intron (NM_015025, intron 3 of 24) intron (NM_015025, intron 3 of 24) -245842 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 301-70 chr11 75569657 75569820 + 3 NA intron (NM_001207014, intron 5 of 5) MIR|SINE|MIR 7485 NM_001235 871 Hs.596449 NM_001235 ENSG00000149257 SERPINH1 AsTP3|CBP1|CBP2|HSP47|OI10|PIG14|PPROM|RA-A47|SERPINH2|gp46 serpin family H member 1 protein-coding 337-37 chr1 235008796 235008962 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -44880 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 272-467 chr9 9073318 9073485 + 3 NA intron (NM_002839, intron 10 of 45) MLT2C2|LTR|ERVL 215383 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 1049-14 chr3 16724491 16724932 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -119288 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 395-342 chr8 122419078 122419237 + 3 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 149487 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 821-11 chr11 29658322 29658696 + 3 NA Intergenic Intergenic 39707 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 309-313 chr21 20714055 20714251 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 88955 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 401-42 chr10 96036028 96036310 + 3 NA intron (NR_134320, intron 2 of 3) L1MEf|LINE|L1 -7414 NM_001134375 54619 Hs.596479 NM_019084 ENSG00000107443 CCNJ bA690P14.1 cyclin J protein-coding 523-240 chr6 26617236 26617493 + 3 NA Intergenic L1MD|LINE|L1 20411 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 787-31 chr4 16806939 16807310 + 3 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 91521 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 679-12 chr10 10953559 10954029 + 3 NA intron (NM_001326319, intron 4 of 16) L1ME4b|LINE|L1 -1631 NR_024411 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 901-17 chr2 22165785 22166339 + 3 NA Intergenic L1MA8|LINE|L1 -370417 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 534-56 chr11 123891413 123891598 + 3 NA Intergenic Intergenic -5835 NM_001363605 338661 Hs.98377 NM_001013743 ENSG00000204300 TMEM225 PMP22CD|PPP1R154|SPATA47 transmembrane protein 225 protein-coding 540-231 chrX 27905347 27905540 + 3 NA Intergenic Intergenic 76006 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 461-67 chr12 104810102 104810411 + 3 NA intron (NM_032148, intron 11 of 11) intron (NM_032148, intron 11 of 11) 148034 NM_001352171 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 595-160 chr8 77688171 77688534 + 3 NA Intergenic L1MCa|LINE|L1 237655 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 495-200 chr5 68752079 68752250 + 3 NA Intergenic Intergenic 277763 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 550-178 chr5 39766970 39767348 + 3 NA Intergenic L1PA13|LINE|L1 246728 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 428-57 chr13 82228728 82228912 + 3 NA Intergenic Intergenic -1001837 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 471-19 chr10 743082 743286 + 3 NA Intergenic L1MEf|LINE|L1 -53516 NM_014974 22982 Hs.432397 NM_014974 ENSG00000151240 DIP2C KIAA0934 disco interacting protein 2 homolog C protein-coding 598-134 chr7 91524026 91524379 + 3 NA Intergenic L1MC1|LINE|L1 259769 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 463-148 chr2 136656712 136656921 + 3 NA Intergenic Intergenic -108729 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 574-85 chr2 163165503 163165731 + 3 NA Intergenic HAL1|LINE|L1 -326850 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 578-194 chrX 37938334 37938733 + 3 NA Intergenic Intergenic -52246 NM_012274 25763 Hs.122959 NM_012274 ENSG00000187516 HYPM CXorf27|HIP17 huntingtin interacting protein M protein-coding 299-312 chr4 27606174 27606344 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 388780 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 695-57 chr20 31229902 31230250 + 3 NA Intergenic Intergenic -27588 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 867-3 chr1 56956119 56956589 + 3 NA intron (NM_000066, intron 3 of 11) MIRc|SINE|MIR 9661 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 467-202 chr4 58594930 58595153 + 3 NA Intergenic L1M5|LINE|L1 -58713 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 490-165 chr20 39480352 39480536 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -255696 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 322-16 chr1 83109866 83110092 + 3 NA intron (NR_147074, intron 9 of 10) MLT1A|LTR|ERVL-MaLR -123771 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 560-144 chr6 41205875 41206361 + 3 NA Intergenic Intergenic -4969 NM_024807 79865 Hs.164797 NM_024807 ENSG00000112195 TREML2 C6orf76|TLT-2|TLT2|dJ238O23.1 triggering receptor expressed on myeloid cells like 2 protein-coding 488-214 chr5 82561311 82561689 + 3 NA Intergenic L2c|LINE|L2 -278655 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 547-18 chr10 43033553 43033916 + 3 NA Intergenic L1M4c|LINE|L1 36171 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 448-259 chr7 49569555 49569786 + 3 NA Intergenic L1M4|LINE|L1 -203968 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 727-14 chr11 40604803 40605147 + 3 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -311845 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 515-50 chr11 116075285 116075601 + 3 NA Intergenic Intergenic -315243 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 812-51 chr8 33837889 33838423 + 3 NA Intergenic L1MEd|LINE|L1 -238050 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 210-139 chr2 135274357 135274446 + 3 NA intron (NM_001286569, intron 9 of 21) intron (NM_001286569, intron 9 of 21) 137773 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 563-198 chr9 137871225 137871570 + 3 NA intron (NR_121583, intron 3 of 3) AluJb|SINE|Alu -6385 NM_000718 774 Hs.495522 NM_000718 ENSG00000148408 CACNA1B BIII|CACNL1A5|CACNN|Cav2.2|DYT23 calcium voltage-gated channel subunit alpha1 B protein-coding 740-48 chr2 234572646 234573137 + 3 NA Intergenic MER110A|LTR|ERV1 -75810 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 454-289 chr7 31446836 31447081 + 3 NA Intergenic Intergenic -67113 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 613-7 chr1 81611606 81611978 + 3 NA intron (NM_001366008, intron 3 of 26) THE1D|LTR|ERVL-MaLR -54090 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 815-17 chr14 57667052 57667400 + 3 NA intron (NM_001352014, intron 1 of 9) G-rich|Low_complexity|Low_complexity -173369 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 402-143 chr2 51443488 51443701 + 3 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 410993 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 588-15 chr10 129749071 129749339 + 3 NA intron (NM_002412, intron 3 of 4) L1MC3|LINE|L1 94169 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 386-184 chr2 136541121 136541352 + 3 NA Intergenic L1ME3A|LINE|L1 -224309 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 580-58 chr16 13695925 13696284 + 3 NA Intergenic MER57E1|LTR|ERV1 -224053 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 420-124 chr2 21747145 21747443 + 3 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -36642 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 565-137 chr5 7365106 7365362 + 3 NA Intergenic L1ME2|LINE|L1 -17257 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 865-46 chr8 126692664 126693050 + 3 NA Intergenic Intergenic -134379 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 866-41 chr6 55994219 55994828 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 97139 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 602-43 chr17 14694021 14694348 + 3 NA Intergenic Intergenic -320621 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 348-551 chr9 29196876 29197043 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 15340 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 872-50 chr8 69405117 69405687 + 3 NA Intergenic Intergenic 42842 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 517-271 chr8 117517818 117518045 + 3 NA Intergenic L2a|LINE|L2 -2782 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 816-42 chr6 78367425 78367934 + 3 NA Intergenic Intergenic 171630 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 575-190 chr7 130627858 130628155 + 3 NA intron (NM_001290033, intron 5 of 19) intron (NM_001290033, intron 5 of 19) 40742 NM_012133 26958 Hs.6421 NM_012133 ENSG00000158623 COPG2 2-COP|gamma-2-COP coatomer protein complex subunit gamma 2 protein-coding 464-87 chr16 90011826 90012100 + 3 NA intron (NM_001288708, intron 1 of 4) intron (NM_001288708, intron 1 of 4) -1842 NM_024043 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding 761-19 chr16 62550699 62551280 + 3 NA Intergenic Intergenic -514551 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 370-381 chr5 160456416 160456539 + 3 NA Intergenic AluJr|SINE|Alu -11774 NR_132748 107075116 Hs.735831 NR_132748 ENSG00000253522 MIR3142HG - MIR3142 host gene ncRNA 509-181 chr5 16346528 16346759 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 94459 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 434-147 chr2 81791069 81791356 + 3 NA Intergenic L1ME1|LINE|L1 -324266 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 462-232 chr5 109868914 109869103 + 3 NA 3' UTR (NM_002372, exon 22 of 22) 3' UTR (NM_002372, exon 22 of 22) -14174 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 622-126 chr7 17435440 17435798 + 3 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 60702 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 469-58 chr11 111323461 111323773 + 3 NA Intergenic MIRc|SINE|MIR -18569 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 215-21 chr1 220852728 220852828 + 3 NA intron (NR_046901, intron 1 of 2) L1MA4|LINE|L1 23523 NR_110797 101929730 Hs.398159 NR_110797 ENSG00000238078 LINC01352 - long intergenic non-protein coding RNA 1352 ncRNA 539-201 chr8 19349061 19349290 + 3 NA intron (NM_001363110, intron 4 of 8) intron (NM_001363110, intron 4 of 8) 35199 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 1108-9 chr19 11780504 11781125 + 3 NA exon (NM_152355, exon 4 of 4) exon (NM_152355, exon 4 of 4) 13814 NM_152355 126068 Hs.675132 NM_152355 ENSG00000197044 ZNF441 - zinc finger protein 441 protein-coding 504-280 chr9 111462455 111462654 + 3 NA intron (NM_001363756, intron 1 of 48) L1M5|LINE|L1 21008 NM_001364931 23392 Hs.368255 NM_001080398 ENSG00000136813 ECPAS ECM29|KIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 436-162 chr20 33946732 33946943 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -47074 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 600-36 chr15 39089693 39090002 + 3 NA Intergenic Intergenic -160822 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 538-60 chr13 27228856 27229163 + 3 NA Intergenic L1MB8|LINE|L1 8248 NR_120429 102723332 Hs.133166 NR_120429 LINC00412 - long intergenic non-protein coding RNA 412 ncRNA 574-34 chr12 118604734 118605007 + 3 NA Intergenic MIRb|SINE|MIR 156809 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 559-65 chr16 65873645 65873987 + 3 NA Intergenic Intergenic -297516 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 413-44 chr10 120916982 120917200 + 3 NA Intergenic Intergenic 65729 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 488-58 chr12 5373414 5373694 + 3 NA Intergenic Intergenic -58554 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 302-280 chr3 26604903 26605070 + 3 NA Intergenic MIR|SINE|MIR -17820 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 537-184 chr4 187376855 187377082 + 3 NA intron (NR_038931, intron 1 of 4) L1MCb|LINE|L1 6320 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 441-190 chr5 9492637 9492806 + 3 NA intron (NM_003966, intron 1 of 22) L1MC1|LINE|L1 -18612 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 721-57 chr3 135958370 135958718 + 3 NA Intergenic L1M3f|LINE|L1 -7184 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 469-43 chr10 98070849 98071103 + 3 NA Intergenic Intergenic -40148 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 513-54 chr11 133749816 133750062 + 3 NA Intergenic (TCCC)n|Simple_repeat|Simple_repeat 60437 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 572-75 chr18 5794880 5795242 + 3 NA non-coding (NR_038839, exon 5 of 5) non-coding (NR_038839, exon 5 of 5) -45634 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 498-42 chr10 111703675 111703932 + 3 NA Intergenic Intergenic 479962 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 691-25 chr14 66433934 66434315 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -52247 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 494-208 chr4 98401411 98401634 + 3 NA intron (NM_021159, intron 6 of 14) HAL1|LINE|L1 140138 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 404-195 chr20 41499052 41499238 + 3 NA intron (NM_032221, intron 6 of 36) intron (NM_032221, intron 6 of 36) 119232 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 563-165 chr6 158956531 158956823 + 3 NA Intergenic Intergenic 43510 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 603-93 chr2 188756976 188757235 + 3 NA intron (NR_161166, intron 1 of 1) L1P4e|LINE|L1 33018 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 1083-10 chr3 90306323 90306923 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1199002 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 403-8 chr1 79180016 79180256 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -173406 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 504-233 chr6 170043230 170043520 + 3 NA Intergenic Intergenic 80752 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 650-126 chr8 84219610 84220054 + 3 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 35166 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1112-16 chr9 27763130 27763623 + 3 NA Intergenic Intergenic -189510 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 650-139 chrX 96161308 96161668 + 3 NA Intergenic L1M5|LINE|L1 176414 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 504-136 chr2 124363871 124364160 + 3 NA intron (NM_130773, intron 3 of 23) L2a|LINE|L2 338728 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 308-462 chr7 48420816 48420930 + 3 NA intron (NM_152701, intron 41 of 61) L1MC4|LINE|L1 249415 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 388-192 chr20 56777455 56777628 + 3 NA Intergenic Intergenic 148235 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 537-52 chr12 45020328 45020656 + 3 NA intron (NM_001004329, intron 3 of 3) L1ME3A|LINE|L1 30607 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 651-65 chr2 125534114 125534397 + 3 NA Intergenic Intergenic 583730 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 493-19 chr1 211141526 211141813 + 3 NA Intergenic L1PA15-16|LINE|L1 -7521 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 384-155 chr2 4378286 4378495 + 3 NA Intergenic Intergenic 277832 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 1056-8 chr3 44723578 44724342 + 3 NA TTS (NM_001134442) TTS (NM_001134442) -5646 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 307-404 chr5 153341801 153341989 + 3 NA Intergenic Intergenic -148629 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 509-143 chr3 5492257 5492505 + 3 NA Intergenic L2b|LINE|L2 -242126 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 400-285 chr5 67004728 67004895 + 3 NA promoter-TSS (NR_111908) promoter-TSS (NR_111908) 156 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 511-38 chr11 91856979 91857163 + 3 NA Intergenic Intergenic -367963 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 515-4 chr1 50273511 50273742 + 3 NA Intergenic Intergenic 149817 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 414-223 chr3 185440534 185440703 + 3 NA intron (NM_004721, intron 3 of 13) intron (NM_004721, intron 3 of 13) 58417 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 462-195 chr4 33370116 33370450 + 3 NA Intergenic Intergenic 669610 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 633-24 chr11 90714749 90715041 + 3 NA intron (NR_104190, intron 3 of 6) THE1D|LTR|ERVL-MaLR 154307 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 282-396 chr6 35857141 35857312 + 3 NA intron (NM_003137, intron 13 of 15) intron (NM_003137, intron 13 of 15) 51874 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 612-139 chr8 53135871 53136216 + 3 NA Intergenic Intergenic 115594 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 426-124 chr2 12848409 12848642 + 3 NA Intergenic Intergenic 111158 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 370-116 chr12 68091275 68091442 + 3 NA Intergenic Intergenic 68382 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 574-5 chr1 111366114 111366326 + 3 NA Intergenic Intergenic 19598 NM_181643 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 294-130 chr14 101281256 101281376 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 126606 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 322-177 chr15 68088234 68088367 + 3 NA intron (NM_016166, intron 2 of 13) Tigger17a|DNA|TcMar-Tigger 33724 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 725-27 chr17 71363237 71363598 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -161238 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 567-203 chr9 103201575 103201852 + 3 NA intron (NR_121578, intron 7 of 9) Charlie1a|DNA|hAT-Charlie 123320 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 550-170 chr4 153867781 153867994 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -78804 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 556-42 chr11 110948762 110949133 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 148371 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 428-28 chr10 90242035 90242257 + 3 NA Intergenic L1MEi|LINE|L1 -284773 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 595-136 chr5 125130146 125130466 + 3 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 93475 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 566-112 chr20 59136178 59136375 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -54744 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 1074 chr1 195883655 195884243 + 3 NA Intergenic Intergenic 204766 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 318-267 chr2 66359189 66359367 + 3 NA promoter-TSS (NR_039938) promoter-TSS (NR_039938) -950 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 305-328 chr22 40493227 40493412 + 3 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -28481 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 361-322 chr4 60637928 60638082 + 3 NA Intergenic L1PA16|LINE|L1 -284614 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 551-91 chr2 94512567 94512879 + 3 NA Intergenic ALR/Alpha|Satellite|centr 74460 NR_024443 100133920 Hs.645503 NR_024443 ENSG00000261522 LOC100133920 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene pseudo 428-281 chr7 136238697 136238856 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -261417 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 539-193 chr7 37540421 37540685 + 3 NA Intergenic Intergenic -91227 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 607-125 chr6 58432939 58433261 + 3 NA Intergenic ALR/Alpha|Satellite|centr -471654 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 404-173 chr2 126911689 126911935 + 3 NA Intergenic Intergenic 12922 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 917-29 chr8 136914302 136914925 + 3 NA Intergenic MER41-int|LTR|ERV1 383815 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 169-101 chr5 120954878 120954947 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR -367638 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 454-69 chr12 17674010 17674271 + 3 NA TTS (NR_039770) TTS (NR_039770) 841 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 357-318 chr4 96253223 96253487 + 3 NA Intergenic Intergenic -57348 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 664-102 chr7 4577611 4577918 + 3 NA Intergenic AluSx|SINE|Alu -104531 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 471-261 chr8 74617233 74617536 + 3 NA intron (NR_033830, intron 2 of 5) L1PB4|LINE|L1 17518 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 480-143 chr2 51452680 51452938 + 3 NA intron (NR_135237, intron 4 of 10) MER31A|LTR|ERV1 420208 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 620-25 chr12 37838776 37839023 + 3 NA Intergenic ALR/Alpha|Satellite|centr -477875 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 243-458 chr8 129295209 129295363 + 3 NA Intergenic Intergenic -54046 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 352-539 chr8 112342847 112342976 + 3 NA intron (NM_001363185, intron 37 of 66) intron (NM_001363185, intron 37 of 66) -300582 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 630-149 chr9 75728396 75728663 + 3 NA Intergenic Intergenic -162115 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 930-24 chr3 84823449 84823963 + 3 NA intron (NR_033860, intron 8 of 20) intron (NR_033860, intron 8 of 20) 45869 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 820-23 chr17_GL000205v2_random 15257 15757 + 3 NA Intergenic CER|Satellite|Satellite 42459 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 416-236 chr3 181047493 181047660 + 3 NA Intergenic Intergenic -9104 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 584-69 chr2 40671263 40671627 + 3 NA Intergenic Intergenic -159010 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 391-178 chr2 78804122 78804309 + 3 NA Intergenic Intergenic -221487 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 736-91 chr8 138391668 138392083 + 3 NA intron (NM_001362965, intron 1 of 19) MIR|SINE|MIR 105386 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 333-529 chr7 15696236 15696383 + 3 NA non-coding (NR_110094, exon 2 of 2) non-coding (NR_110094, exon 2 of 2) 7931 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 1186-5 chr12 133164957 133165685 + 3 NA Intergenic L1MB4|LINE|L1 -16174 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 575-177 chr7 11442703 11442934 + 3 NA intron (NM_015204, intron 13 of 26) intron (NM_015204, intron 13 of 26) 389380 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 370-37 chr10 30770643 30770848 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR 47526 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 419-292 chr8 87503218 87503454 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 370679 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 488-93 chr16 6405438 6405798 + 3 NA intron (NM_018723, intron 2 of 15) MLT1I|LTR|ERVL-MaLR -368191 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 535-168 chr3 80189537 80189748 + 3 NA Intergenic Intergenic -421644 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 470-149 chr2 234669161 234669413 + 3 NA Intergenic Intergenic -13381 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 409-199 chr3 95543866 95544106 + 3 NA Intergenic L1MEc|LINE|L1 139207 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 358-263 chr20 51241631 51241797 + 3 NA Intergenic L2a|LINE|L2 211263 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 269-182 chr2 32076074 32076222 + 3 NA intron (NM_001363875, intron 1 of 15) AluSz6|SINE|Alu 12537 NM_199436 6683 Hs.468091 NM_014946 ENSG00000021574 SPAST ADPSP|FSP2|SPG4 spastin protein-coding 244-15 chr1 145840736 145840834 + 3 NA intron (NM_006468, intron 13 of 14) intron (NM_006468, intron 13 of 14) -4845 NM_001012758 200035 Hs.585066 NM_001012758 ENSG00000186364 NUDT17 - nudix hydrolase 17 protein-coding 367-204 chr2 78917571 78917718 + 3 NA Intergenic Intergenic -108058 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 459-3 chr1 22844202 22844466 + 3 NA intron (NM_004442, intron 3 of 15) MIRb|SINE|MIR 18892 NR_036214 100422914 NR_036214 ENSG00000264014 MIR4253 - microRNA 4253 ncRNA 363-56 chr10 65215992 65216185 + 3 NA Intergenic AluJr4|SINE|Alu -291570 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 638-8 chr1 195656006 195656351 + 3 NA Intergenic Intergenic 432537 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 228-196 chr21 20184067 20184194 + 3 NA Intergenic Intergenic 74555 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 575-29 chr11 42406339 42406625 + 3 NA Intergenic MamGypLTR2c|LTR|Gypsy -152792 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 535-88 chr15 57985970 57986209 + 3 NA intron (NM_170696, intron 6 of 11) L1MEc|LINE|L1 27934 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 260-259 chr3 29620822 29620977 + 3 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 313257 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 368-250 chr2 181409615 181409832 + 3 NA Intergenic L2b|LINE|L2 -47169 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 524-107 chr2 21205443 21205669 + 3 NA Intergenic LTR101_Mam|LTR|ERVL 81570 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 951-23 chr4 107428549 107428994 + 3 NA Intergenic (AGACTG)n|Simple_repeat|Simple_repeat 291463 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 562-172 chr5 41547008 41547327 + 3 NA Intergenic MIRb|SINE|MIR -36566 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 482-203 chr5 83500908 83501158 + 3 NA intron (NM_001164098, intron 5 of 13) L1M4|LINE|L1 29289 NM_004385 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 670-107 chr6 164484672 164484987 + 3 NA Intergenic Intergenic 337234 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 419-209 chr4 103816071 103816318 + 3 NA Intergenic Intergenic -96209 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 151-12 chr10 66375940 66376002 + 3 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -550065 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 509-269 chr9 92532720 92532993 + 3 NA intron (NM_001197296, intron 1 of 9) L1MEg|LINE|L1 3236 NM_001197296 1842 Hs.117060 NM_001393 ENSG00000106823 ECM2 - extracellular matrix protein 2 protein-coding 721-5 chr1 110772663 110773067 + 3 NA Intergenic L1PA13|LINE|L1 -97925 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 311-35 chr1 220136073 220136206 + 3 NA intron (NM_018060, intron 15 of 22) AluSz|SINE|Alu -17898 NR_029711 406969 NR_029711 ENSG00000207624 MIR194-1 MIRN194-1|mir-194-1 microRNA 194-1 ncRNA 325-234 chr18 1400479 1400706 + 3 NA Intergenic L1ME3C|LINE|L1 -40963 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 883-41 chr8 135322397 135322854 + 3 NA Intergenic L1M5|LINE|L1 88494 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 619-110 chr6 54449687 54450063 + 3 NA Intergenic L1MB3|LINE|L1 141434 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 997-8 chr18 51598807 51599193 + 3 NA Intergenic Intergenic 206958 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 866-36 chr5 45956534 45957093 + 3 NA Intergenic ALR/Alpha|Satellite|centr -260433 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 836-12 chr10 52318612 52319078 + 3 NA Intergenic Intergenic 4564 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 896-42 chr9 28167934 28168408 + 3 NA intron (NM_152570, intron 5 of 6) MLT1K|LTR|ERVL-MaLR 551134 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 395 chr1 4176019 4176189 + 3 NA Intergenic Intergenic -227124 NR_147024 105376672 Hs.435087 NR_147024 ENSG00000226374 LINC01345 - long intergenic non-protein coding RNA 1345 ncRNA 430-27 chr10 44105113 44105380 + 3 NA Intergenic L1MB2|LINE|L1 -187504 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 445-110 chr2 11273355 11273696 + 3 NA intron (NM_001321643, intron 3 of 32) L1M4c|LINE|L1 71111 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 223-252 chr4 93554590 93554694 + 3 NA intron (NM_001286838, intron 12 of 14) AluJb|SINE|Alu -274111 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 508-40 chr11 29689731 29689954 + 3 NA Intergenic Intergenic 71040 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 358-233 chr2 125784696 125784871 + 3 NA Intergenic L1M8|LINE|L1 333202 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 1021-6 chr15 80410433 80410805 + 3 NA intron (NM_014862, intron 1 of 18) L4_C_Mam|LINE|RTE-X 6237 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 396-305 chr6 19407132 19407338 + 3 NA Intergenic Intergenic -42586 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 352-275 chr20 1308681 1308894 + 3 NA 3' UTR (NM_014723, exon 6 of 6) 3' UTR (NM_014723, exon 6 of 6) 4886 NM_015685 27111 Hs.657015 NM_015685 ENSG00000125775 SDCBP2 SITAC|SITAC18|ST-2|ST2 syndecan binding protein 2 protein-coding 697-62 chr5 167104807 167105175 + 3 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) 31749 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 754-81 chr8 126671785 126672120 + 3 NA Intergenic LTR48|LTR|ERV1 -113474 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 347-382 chr5 28025939 28026139 + 3 NA Intergenic Intergenic 261626 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 422-107 chr16 72753083 72753300 + 3 NA Intergenic Intergenic -88221 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 680-40 chr15 70994224 70994629 + 3 NA intron (NM_017691, intron 11 of 15) L1M5|LINE|L1 101983 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 531-247 chr8 124947661 124947960 + 3 NA intron (NR_027321, intron 3 of 3) L1MEc|LINE|L1 5802 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 671-64 chr3 125130281 125130792 + 3 NA intron (NM_001195483, intron 5 of 12) AluSz6|SINE|Alu 21016 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 447-99 chr18 801375 801601 + 3 NA intron (NM_005433, intron 1 of 11) L3|LINE|CR1 10754 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 839-13 chr14 82505986 82506331 + 3 NA Intergenic Intergenic -136474 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1015-4 chr13 62989820 62990367 + 3 NA Intergenic L1M1|LINE|L1 -182734 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 590-184 chrX 84645025 84645348 + 3 NA Intergenic Intergenic -142733 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 438-234 chr6 9077783 9078002 + 3 NA Intergenic Intergenic 425683 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 1084-23 chr5 153935647 153936207 + 3 NA Intergenic Intergenic -36940 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 955-14 chr4 104257762 104258292 + 3 NA Intergenic L1MC1|LINE|L1 -232938 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 478-87 chr14 81747558 81747770 + 3 NA Intergenic Intergenic -4526 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 286-37 chr10 31101589 31101756 + 3 NA Intergenic AluSx|SINE|Alu -69735 NM_001143768 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 782-13 chr11 96607682 96608014 + 3 NA Intergenic Intergenic 99423 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 193-141 chr3 68149474 68149558 + 3 NA intron (NM_001252216, intron 2 of 4) MSTB1|LTR|ERVL-MaLR 145269 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 405-299 chr7 40656354 40656581 + 3 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 323472 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 284-382 chr7 49954380 49954559 + 3 NA intron (NM_001159878, intron 7 of 7) L1MEc|LINE|L1 138777 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 773-23 chr22 48776654 48777032 + 3 NA Intergenic L1M7|LINE|L1 -3452 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 726-9 chr10 75292009 75292416 + 3 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -4171 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 446-17 chr1 158512273 158512462 + 3 NA Intergenic Intergenic 32489 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 583-53 chr13 100247703 100247964 + 3 NA intron (NM_001352612, intron 8 of 21) intron (NM_001352612, intron 8 of 21) 158740 NR_148028 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 481-278 chr7 52322148 52322366 + 3 NA Intergenic MER39|LTR|ERV1 -713376 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 409-205 chr3 147139492 147139689 + 3 NA Intergenic Intergenic 217667 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 289-500 chrX 57257670 57257892 + 3 NA Intergenic L1MA9|LINE|L1 -28896 NM_001353840 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 407-126 chr19 29382226 29382395 + 3 NA intron (NR_040029, intron 9 of 9) Charlie18a|DNA|hAT-Charlie 143442 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 517-50 chr11 108654661 108654997 + 3 NA Intergenic MIRb|SINE|MIR -10240 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 454-15 chr1 240902344 240902575 + 3 NA intron (NM_001282773, intron 4 of 15) intron (NM_001282773, intron 4 of 15) -229813 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 432-309 chrX 135286823 135287042 + 3 NA 3' UTR (NM_007131, exon 7 of 7) 3' UTR (NM_007131, exon 7 of 7) 9107 NM_001185063 7626 Hs.371717 NM_007131 ENSG00000186376 ZNF75D D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28 zinc finger protein 75D protein-coding 567-24 chr10 44525807 44526160 + 3 NA Intergenic L1MD2|LINE|L1 -140886 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 369-373 chr6 167960444 167960589 + 3 NA intron (NM_001040000, intron 29 of 29) intron (NM_001040000, intron 29 of 29) 16423 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 263-372 chr6 137829287 137829468 + 3 NA intron (NR_049793, intron 3 of 3) intron (NR_049793, intron 3 of 3) -37882 NM_001270507 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 466-7 chr1 103500077 103500369 + 3 NA intron (NM_001347929, intron 1 of 5) intron (NM_001347929, intron 1 of 5) 25288 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 542-90 chr2 13518255 13518520 + 3 NA Intergenic Intergenic -511374 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 378-327 chr5 3241778 3241977 + 3 NA Intergenic L1MC1|LINE|L1 64042 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 216-211 chr3 31256789 31256935 + 3 NA Intergenic Intergenic -95075 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 376-345 chr6 47394229 47394388 + 3 NA Intergenic AluSx|SINE|Alu -83481 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 621-74 chr3 8382954 8383358 + 3 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 118502 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 514-63 chr12 72740644 72740887 + 3 NA Intergenic L1PA15|LINE|L1 -418425 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 241-345 chr6 155110415 155110503 + 3 NA intron (NM_012454, intron 1 of 25) intron (NM_012454, intron 1 of 25) 20170 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 553-109 chr2 41472703 41472956 + 3 NA Intergenic Intergenic -404726 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 333-215 chr19 42467335 42467461 + 3 NA intron (NR_073179, intron 1 of 1) intron (NR_073179, intron 1 of 1) -24452 NR_133910 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 1300-2 chr2 31686503 31687383 + 3 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -106005 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 612-31 chr11 119466936 119467221 + 3 NA intron (NR_034160, intron 2 of 3) L1MA3|LINE|L1 -42093 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 360-249 chr2 194209093 194209257 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -135094 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 587-2 chr1 44479806 44480159 + 3 NA intron (NM_001319957, intron 1 of 13) MLT1H2-int|LTR|ERVL-MaLR 55981 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 400-9 chr1 84817073 84817241 + 3 NA intron (NM_012152, intron 2 of 2) L3|LINE|CR1 76049 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 613-13 chr10 4601293 4601550 + 3 NA Intergenic L1MC4|LINE|L1 -54735 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 442-192 chr3 110619335 110619502 + 3 NA Intergenic Intergenic 450541 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 592-69 chr18 37525739 37526081 + 3 NA intron (NM_001353701, intron 1 of 1) MER5A|DNA|hAT-Charlie 39888 NM_001353719 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 814-62 chr8 130831521 130832029 + 3 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 209134 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 488-83 chr14 72125366 72125580 + 3 NA intron (NM_001370288, intron 2 of 16) LTR31|LTR|ERV1 191946 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 360-409 chr6 67189830 67190016 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -865428 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 604-164 chr8 92337087 92337447 + 3 NA Intergenic L1PB2|LINE|L1 -233882 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 752-51 chr3 103862500 103863026 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -338647 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 421-97 chr16 50945748 50945921 + 3 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 67061 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 666-66 chr2 224616749 224617171 + 3 NA Intergenic Intergenic -31563 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 728-20 chr12 39014885 39015268 + 3 NA Intergenic L2a|LINE|L2 -109485 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 478-289 chr8 77587588 77587809 + 3 NA Intergenic Intergenic 137001 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 674-10 chr10 80191446 80191863 + 3 NA intron (NM_001278408, intron 1 of 16) intron (NM_001278408, intron 1 of 16) 12837 NM_001278408 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ALS23|ANX11|CAP-50|CAP50 annexin A11 protein-coding 410-331 chr9 31250310 31250555 + 3 NA Intergenic L1MA2|LINE|L1 131058 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 543-78 chr14 72361497 72361775 + 3 NA intron (NM_001370288, intron 3 of 16) L2a|LINE|L2 -155184 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 373-238 chr20 42186828 42186996 + 3 NA intron (NM_133170, intron 17 of 31) L2a|LINE|L2 -498571 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 697-66 chr7 21331567 21331995 + 3 NA Intergenic L1M4a2|LINE|L1 -96302 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 504-226 chr6 51360923 51361111 + 3 NA Intergenic Intergenic -260853 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 335-210 chr18 21136836 21137013 + 3 NA Intergenic L1M4|LINE|L1 -25111 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 636-35 chr13 37160429 37160844 + 3 NA Intergenic L1PA16|LINE|L1 -54972 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 447-275 chr8 108806144 108806422 + 3 NA Intergenic L1PB1|LINE|L1 -18689 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 712-96 chr8 84522690 84523197 + 3 NA intron (NM_001354308, intron 2 of 9) THE1B|LTR|ERVL-MaLR 107459 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 472-308 chr8 36190913 36191120 + 3 NA Intergenic MER21B|LTR|ERVL -480696 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 459-279 chr7 62822309 62822543 + 3 NA Intergenic ALR/Alpha|Satellite|centr 481630 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 424-108 chr18 1978580 1978820 + 3 NA Intergenic L1MA9|LINE|L1 592805 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 337-115 chr12 39879107 39879287 + 3 NA intron (NM_052885, intron 4 of 9) MSTA-int|LTR|ERVL-MaLR 226884 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 652-75 chr20 53053079 53053539 + 3 NA intron (NM_173485, intron 1 of 2) L1MB7|LINE|L1 80951 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 461-29 chr10 33972187 33972393 + 3 NA Intergenic L1MB8|LINE|L1 -199610 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 448-257 chr7 44338679 44338939 + 3 NA Intergenic L1ME3A|LINE|L1 -13178 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 530-26 chr10 49172030 49172350 + 3 NA intron (NM_001288742, intron 1 of 4) intron (NM_001288742, intron 1 of 4) 16201 NM_001288740 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 544-62 chr14 24567737 24568022 + 3 NA Intergenic L1M2a1|LINE|L1 8371 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 420-211 chr4 134496364 134496527 + 3 NA intron (NR_147155, intron 3 of 3) L1MA4A|LINE|L1 72577 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 486-295 chr8 112774535 112774777 + 3 NA intron (NM_001363185, intron 11 of 66) L2|LINE|L2 131163 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 267-84 chr12 29040143 29040300 + 3 NA Intergenic LTR16E1|LTR|ERVL -109057 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 543-210 chr5 179077377 179077635 + 3 NA intron (NM_014594, intron 4 of 4) intron (NM_014594, intron 4 of 4) 17133 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 531-140 chr20 55188747 55189007 + 3 NA Intergenic Intergenic -234166 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 587-146 chr6 125622199 125622521 + 3 NA Intergenic MER33|DNA|hAT-Charlie -51993 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 542-233 chr8 144968405 144968746 + 3 NA Intergenic Intergenic -17695 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 1146-13 chr4 111481166 111481776 + 3 NA Intergenic MamRep1527|LTR|LTR -620824 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 611-55 chr16 80073723 80074015 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie 278620 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 599-38 chr15 57478615 57478866 + 3 NA intron (NM_032866, intron 8 of 18) AluJb|SINE|Alu 102235 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 420-239 chr5 115345866 115346033 + 3 NA Intergenic L1MEg|LINE|L1 -49295 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 279-150 chr18 75571816 75571978 + 3 NA Intergenic MER57B1|LTR|ERV1 140506 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 230-88 chr12 83948436 83948587 + 3 NA Intergenic Intergenic 964288 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 310-139 chr14 63849662 63849842 + 3 NA Intergenic Intergenic -3213 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 682-98 chr8 43591241 43591648 + 3 NA Intergenic ALR/Alpha|Satellite|centr 299002 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 575-16 chr10 34981757 34981995 + 3 NA Intergenic Intergenic 92407 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 340-369 chr3 96683581 96683848 + 3 NA Intergenic L1MA1|LINE|L1 -130880 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 736-77 chr6 80535758 80536299 + 3 NA Intergenic L1MC4|LINE|L1 429357 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 380-100 chr12 77162372 77162614 + 3 NA Intergenic Intergenic -96924 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 228-28 chr10 9179295 9179383 + 3 NA Intergenic Intergenic -96274 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 517-41 chr11 7241412 7241730 + 3 NA Intergenic Intergenic 6805 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 541-219 chr7 68142106 68142453 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR 122026 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 456-65 chr12 66959420 66959694 + 3 NA Intergenic Intergenic 136727 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 517-92 chr16 20517344 20517759 + 3 NA Intergenic Intergenic 58816 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 516-174 chr3 73716753 73717029 + 3 NA Intergenic L2a|LINE|L2 -91950 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 755-6 chr1 94283016 94283575 + 3 NA Intergenic Intergenic -35549 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 955-13 chr4 30302771 30303274 + 3 NA Intergenic Intergenic -417347 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 480-281 chr7 106612338 106612578 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 48700 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 749-86 chr7 54053813 54054297 + 3 NA Intergenic Intergenic -242124 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 454-247 chr4 171604929 171605169 + 3 NA intron (NR_147157, intron 3 of 4) L1MDa|LINE|L1 33714 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 469-204 chr4 124591579 124591820 + 3 NA Intergenic Intergenic -33265 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 893-25 chr2 76688020 76688492 + 3 NA Intergenic Intergenic -297709 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 526-202 chr5 113703672 113703950 + 3 NA Intergenic Intergenic 190117 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 426-89 chr15 86888164 86888351 + 3 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -44623 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 402-330 chr7 143198290 143198516 + 3 NA intron (NM_001130026, intron 8 of 10) L1MA10|LINE|L1 14984 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 504-264 chr8 118536179 118536425 + 3 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -84699 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 421-260 chr6 80780876 80781084 + 3 NA Intergenic L1M2c|LINE|L1 674309 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 822-41 chr3 84477097 84477622 + 3 NA Intergenic Intergenic 392216 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 477-248 chr6 163363419 163363682 + 3 NA Intergenic (TAAA)n|Simple_repeat|Simple_repeat -16517 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 423-89 chr15 92863303 92863483 + 3 NA Intergenic AluSz6|SINE|Alu -19450 NR_037600 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 216-277 chr5 65690521 65690621 + 3 NA intron (NM_019072, intron 5 of 10) L1MEd|LINE|L1 31538 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 605-89 chr5 15737949 15738303 + 3 NA intron (NM_001278317, intron 2 of 3) MIRc|SINE|MIR -123124 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 898-8 chr14 71645561 71646181 + 3 NA intron (NM_001354286, intron 8 of 24) Charlie1a|DNA|hAT-Charlie 59573 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 587-43 chr14 46684841 46685055 + 3 NA Intergenic L1MA4A|LINE|L1 -33167 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 939-23 chr6 76562796 76563279 + 3 NA intron (NR_149101, intron 2 of 2) intron (NR_149101, intron 2 of 2) 30586 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 487-24 chr1 181624678 181624925 + 3 NA intron (NM_001205293, intron 6 of 47) Tigger1|DNA|TcMar-Tigger 141284 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 414-4 chr1 48797509 48797748 + 3 NA intron (NR_136623, intron 5 of 12) AluSz|SINE|Alu -20659 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 483-157 chr3 1730086 1730258 + 3 NA Intergenic Intergenic -368631 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 300-355 chr5 26796634 26796740 + 3 NA Intergenic L1MB7|LINE|L1 241899 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 369-424 chr8 130742773 130742925 + 3 NA Intergenic Intergenic 298060 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 253-307 chr4 130425545 130425691 + 3 NA Intergenic Intergenic 49257 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 356-446 chr7 33480147 33480282 + 3 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 350650 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 550-172 chr4 161373057 161373302 + 3 NA Intergenic L1M4b|LINE|L1 -649554 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 834-51 chr8 89614026 89614493 + 3 NA Intergenic L2c|LINE|L2 143452 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 942-5 chr10 58728682 58729155 + 3 NA intron (NM_001080512, intron 3 of 20) Tigger1|DNA|TcMar-Tigger 13903 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 440-73 chr14 97943789 97944026 + 3 NA intron (NR_152750, intron 2 of 2) intron (NR_152750, intron 2 of 2) 34217 NR_152748 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 555-75 chr19 30404479 30404714 + 3 NA intron (NM_014717, intron 1 of 4) MIR|SINE|MIR 32212 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 390-402 chr8 134407376 134407665 + 3 NA Intergenic L2c|LINE|L2 -190551 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 536-35 chr10 91096648 91096934 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 50983 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 357-297 chr4 178905 179159 + 3 NA intron (NR_110527, intron 3 of 4) L1M3|LINE|L1 -33568 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 537-50 chr12 13685445 13685736 + 3 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 294766 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 541-98 chr18 78317018 78317318 + 3 NA Intergenic Intergenic -323441 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 382-230 chr2 228320391 228320563 + 3 NA Intergenic Intergenic -138790 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 550-20 chr10 12693477 12693725 + 3 NA intron (NM_001351032, intron 5 of 11) AluJb|SINE|Alu 31752 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 1032-22 chr8 35225855 35226437 + 3 NA Intergenic Intergenic -9329 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 773-25 chr3 137648607 137649052 + 3 NA Intergenic Intergenic -115486 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 398-99 chr14 44500456 44500616 + 3 NA Intergenic L1ME1|LINE|L1 6747 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 336-314 chr20 7014412 7014573 + 3 NA Intergenic Intergenic 239710 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 418-43 chr11 50645385 50645553 + 3 NA Intergenic ALR/Alpha|Satellite|centr 236322 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 460-279 chr7 126332706 126332966 + 3 NA Intergenic L1MC4a|LINE|L1 725348 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 441-231 chr6 135732156 135732439 + 3 NA Intergenic Intergenic -119404 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 675-4 chr1 79526119 79526531 + 3 NA Intergenic Intergenic -519595 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 686-78 chr7 111174001 111174318 + 3 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 83032 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 463-213 chr4 106395254 106395412 + 3 NA Intergenic L1M4c|LINE|L1 -27898 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 696-83 chr4 149351612 149351994 + 3 NA TTS (NM_001363507) TTS (NM_001363507) 197508 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 418-4 chr1 83821446 83821782 + 3 NA intron (NR_119374, intron 2 of 2) L1MC1|LINE|L1 38932 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 674-87 chr6 40082127 40082441 + 3 NA Intergenic Intergenic -147822 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 577-196 chr8 138990974 138991261 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -77076 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 533-74 chr17 33715520 33715753 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -181876 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 389-164 chr2 45304835 45304964 + 3 NA Intergenic MamTip2|DNA|hAT-Tip100 -49958 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 347-237 chr2 116090159 116090306 + 3 NA Intergenic L1MA4A|LINE|L1 746417 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 507-50 chr11 50391831 50392105 + 3 NA Intergenic ALR/Alpha|Satellite|centr -17179 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 569-82 chr19 48980518 48980763 + 3 NA intron (NM_002103, intron 8 of 15) AluSz|SINE|Alu 12669 NM_002103 2997 Hs.386225 NM_002103 ENSG00000104812 GYS1 GSY|GYS glycogen synthase 1 protein-coding 467-50 chr11 81423129 81423404 + 3 NA Intergenic Intergenic 467570 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 423-14 chr1 105344938 105345185 + 3 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 273874 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 452-62 chr12 117881154 117881327 + 3 NA intron (NM_173598, intron 1 of 19) intron (NM_173598, intron 1 of 19) 87750 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 955-7 chr16 35124055 35124623 + 3 NA Intergenic Intergenic 46052 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 253-286 chr4 30571776 30571877 + 3 NA Intergenic MIR|SINE|MIR -148543 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 644-15 chr12 46800686 46801040 + 3 NA intron (NM_001143824, intron 1 of 15) intron (NM_001143824, intron 1 of 15) 25134 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 539-204 chr8 86323700 86323991 + 3 NA Intergenic L2b|LINE|L2 -18702 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 781-70 chr9 75808106 75808569 + 3 NA Intergenic Intergenic -82307 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 314-179 chr15 25136655 25136787 + 3 NA non-coding (NR_022009, exon 1 of 1) non-coding (NR_022009, exon 1 of 1) 1079 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 419-244 chr5 175688926 175689258 + 3 NA intron (NM_001367711, intron 2 of 2) intron (NM_001367711, intron 2 of 2) 31021 NM_001131055 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 429-41 chr10 88400440 88400640 + 3 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 182778 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 305-336 chr3 7816924 7817031 + 3 NA Intergenic MIRb|SINE|MIR 199330 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 497-123 chr2 58314087 58314313 + 3 NA Intergenic LTR7|LTR|ERV1 38323 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 437-100 chr16 76349759 76349996 + 3 NA intron (NM_001322191, intron 2 of 22) intron (NM_001322191, intron 2 of 22) 40025 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 428-188 chr3 109964868 109965128 + 3 NA Intergenic Intergenic 362170 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 280-15 chr1 85938088 85938265 + 3 NA intron (NM_152890, intron 24 of 59) ERV3-16A3_I-int|LTR|ERVL 218295 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 226-324 chr7 39327339 39327478 + 3 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 1726 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 885-33 chr9 83546568 83546889 + 3 NA Intergenic AluSc|SINE|Alu -8327 NM_174938 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 400-152 chr2 29951437 29951602 + 3 NA Intergenic Intergenic -29933 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 683-9 chr10 83434236 83434579 + 3 NA Intergenic LTR49-int|LTR|ERV1 242682 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 382-372 chr7 8560017 8560261 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 126530 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 985-8 chr11 115858791 115859321 + 3 NA Intergenic L1ME3|LINE|L1 -98856 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 505-227 chr4 129673466 129673651 + 3 NA Intergenic Intergenic 97920 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 466-90 chr16 7908774 7909044 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 576064 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 634-26 chr10 133072717 133072933 + 3 NA Intergenic Intergenic 13872 NR_111905 100128127 Hs.694139 NR_111905 ADGRA1-AS1 GPR123-AS1 adhesion G protein-coupled receptor A1 antisense RNA 1 ncRNA 418-41 chr11 32992769 32992981 + 3 NA Intergenic Intergenic -23003 NM_001077242 91614 Hs.280990 NM_139160 ENSG00000121690 DEPDC7 TR2|dJ85M6.4 DEP domain containing 7 protein-coding 369-175 chr19 34742021 34742173 + 3 NA exon (NM_001145665, exon 4 of 4) exon (NM_001145665, exon 4 of 4) 7854 NM_001029997 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 673-105 chr6 132039278 132039609 + 3 NA Intergenic L1M2|LINE|L1 75820 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 537-239 chr7 68009360 68009710 + 3 NA Intergenic LTR72B|LTR|ERV1 -10718 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 446-137 chr19 35579786 35580058 + 3 NA Intergenic L1M4|LINE|L1 -16264 NM_000704 495 Hs.36992 NM_000704 ENSG00000105675 ATP4A ATP6A ATPase H+/K+ transporting subunit alpha protein-coding 837-25 chr3 26822550 26822963 + 3 NA Intergenic MER61-int|LTR|ERV1 128199 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 782-17 chr12 125524268 125524683 + 3 NA intron (NM_052907, intron 4 of 8) MIR|SINE|MIR -97977 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 344-192 chr17 79661762 79662024 + 3 NA Intergenic L1ME3A|LINE|L1 45356 NR_039893 100616170 NR_039893 ENSG00000266665 MIR4739 mir-4739 microRNA 4739 ncRNA 301-136 chr15 72895137 72895305 + 3 NA Intergenic L1ME1|LINE|L1 -111463 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 916-4 chr12 17847095 17847723 + 3 NA Intergenic L1MCa|LINE|L1 174110 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 427-159 chr3 74005426 74005612 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 196275 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 448-75 chr13 79115694 79115879 + 3 NA Intergenic L1MEf|LINE|L1 -275736 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 503-214 chr4 63859328 63859679 + 3 NA Intergenic Intergenic 549947 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 324-147 chr13 92704778 92704902 + 3 NA intron (NR_049776, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat 15115 NR_049776 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 575-117 chr3 68402521 68402843 + 3 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -97955 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 619-138 chr9 112996870 112997242 + 3 NA TTS (NM_001101338) TTS (NM_001101338) 15136 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 689-55 chr20 1070093 1070453 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -42956 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 585-138 chr6 64697257 64697513 + 3 NA intron (NM_001292009, intron 22 of 43) L1M2|LINE|L1 -604033 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 1520 chr14 78802212 78803191 + 3 NA intron (NR_073547, intron 8 of 20) AluSz|SINE|Alu -397281 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 1155-3 chr17 55816120 55816765 + 3 NA intron (NM_001330378, intron 5 of 5) intron (NM_001330378, intron 5 of 5) 65337 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 684-72 chr3 60113115 60113499 + 3 NA intron (NM_001320900, intron 6 of 9) L2a|LINE|L2 -32398 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 293-333 chr5 28903547 28903718 + 3 NA Intergenic Intergenic -23238 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 523-179 chr3 88753323 88753497 + 3 NA Intergenic Intergenic -354211 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 377-246 chr20 19484042 19484247 + 3 NA intron (NM_020689, intron 2 of 16) Tigger4b|DNA|TcMar-Tigger -199548 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 412-83 chr13 89346425 89346593 + 3 NA Intergenic L1MEf|LINE|L1 -109619 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 902-11 chr13 61011885 61012436 + 3 NA Intergenic Intergenic 187720 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 659-113 chr8 64945339 64945725 + 3 NA Intergenic Intergenic -146795 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 423-230 chr5 115325993 115326137 + 3 NA Intergenic HAL1ME|LINE|L1 -29411 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 643-31 chr14 59824757 59825201 + 3 NA intron (NM_021136, intron 1 of 8) L1MA9|LINE|L1 45797 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 515-40 chr11 38752009 38752319 + 3 NA Intergenic LOR1a|LTR|ERV1 103306 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 509-11 chr1 147444771 147445038 + 3 NA intron (NR_038423, intron 3 of 3) L1MB4|LINE|L1 72971 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 340-58 chr10 89291985 89292164 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -9972 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 186-150 chr7 42323720 42323787 + 3 NA Intergenic HAL1ME|LINE|L1 -86544 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 743-56 chr3 186389750 186390162 + 3 NA Intergenic Intergenic -27722 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 417-165 chr20 41827915 41828111 + 3 NA Intergenic MER54A|LTR|ERVL -209636 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 376-142 chr17 68707057 68707242 + 3 NA Intergenic Intergenic 78995 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 340-468 chr6 518705 518883 + 3 NA intron (NM_018303, intron 23 of 27) intron (NM_018303, intron 23 of 27) 127042 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 580-141 chr4 101804029 101804350 + 3 NA intron (NM_001127507, intron 1 of 15) Tigger2b_Pri|DNA|TcMar-Tigger -9653 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 638-17 chr10 64779122 64779486 + 3 NA Intergenic Intergenic -46224 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 583-63 chr16 60693429 60693756 + 3 NA Intergenic L2|LINE|L2 -333799 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 674-6 chr1 110755305 110755556 + 3 NA Intergenic L1ME2|LINE|L1 -80490 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 833-17 chr2 170251914 170252420 + 3 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 74020 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 524-6 chr1 67958877 67959221 + 3 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 92582 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 540-14 chr1 95490596 95490900 + 3 NA Intergenic L2a|LINE|L2 16011 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 429-287 chr8 31706605 31706786 + 3 NA intron (NM_013962, intron 1 of 4) L1ME4b|LINE|L1 66943 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 570-35 chr10 129573458 129573669 + 3 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 106322 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 771-86 chr8 136373233 136373660 + 3 NA Intergenic Intergenic -157352 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 599-36 chr14 73210156 73210449 + 3 NA intron (NM_000021, intron 9 of 11) HAL1|LINE|L1 -27204 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 466-238 chr6 169477060 169477426 + 3 NA intron (NR_146875, intron 19 of 20) L1M5|LINE|L1 -223129 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 1408-3 chr20 29262651 29263666 + 3 NA Intergenic ALR/Alpha|Satellite|centr 153803 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 828-20 chr16 10413192 10413700 + 3 NA intron (NM_024997, intron 1 of 11) THE1A|LTR|ERVL-MaLR 27385 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 374-386 chr8 79134485 79134648 + 3 NA Intergenic L2a|LINE|L2 -197622 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 468-226 chr4 77077376 77077603 + 3 NA Intergenic L2b|LINE|L2 -1500 NM_006835 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 557-179 chr7 19599484 19599773 + 3 NA Intergenic L1PA16|LINE|L1 105808 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 527-260 chr8 59634886 59635103 + 3 NA Intergenic Intergenic 515784 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 251-302 chr5 53918428 53918521 + 3 NA intron (NM_019087, intron 4 of 4) AluJo|SINE|Alu 33125 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 1312 chr11 78880964 78881530 + 3 NA intron (NM_001098816, intron 9 of 33) intron (NM_001098816, intron 9 of 33) -306383 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 552-208 chr8 87496053 87496368 + 3 NA Intergenic L1MC1|LINE|L1 377805 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 710-31 chr14 72532218 72532703 + 3 NA intron (NM_001370288, intron 15 of 16) Tigger1|DNA|TcMar-Tigger 15640 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 304-434 chr5 140004666 140004804 + 3 NA intron (NM_013983, intron 1 of 10) L1MC4a|LINE|L1 38564 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 626-134 chr8 43764689 43765150 + 3 NA Intergenic ALR/Alpha|Satellite|centr 472477 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 1147-6 chr7 38132746 38133310 + 3 NA Intergenic L1ME1|LINE|L1 -45217 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 442-56 chr12 44959329 44959484 + 3 NA Intergenic Intergenic -45478 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 375-378 chr7 46610611 46610764 + 3 NA Intergenic Intergenic 86435 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 790-6 chr10 58145400 58145793 + 3 NA Intergenic Intergenic 122298 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 826-10 chr10 62409459 62409931 + 3 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -34568 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 463-142 chr2 82363958 82364186 + 3 NA Intergenic L2a|LINE|L2 -492731 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 314-427 chr4 62961205 62961354 + 3 NA Intergenic Intergenic -799514 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 882-45 chr9 120807693 120808223 + 3 NA Intergenic L1MA8|LINE|L1 14462 NR_027442 100288842 Hs.706815 NR_027442 B3GNT10 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 10 (putative) pseudo 701-45 chr2 147399810 147400123 + 3 NA Intergenic Intergenic -444551 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 972-18 chr4 43405507 43405940 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 86820 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 490-124 chr19 11687559 11687798 + 3 NA Intergenic MER101-int|LTR|ERV1 13680 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 298-249 chr20 10485090 10485285 + 3 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 49882 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 618-96 chr5 44093572 44093926 + 3 NA Intergenic Intergenic -294983 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 517-132 chr2 81934616 81934870 + 3 NA Intergenic L2|LINE|L2 -467797 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 365-280 chr4 32791877 32792088 + 3 NA Intergenic Intergenic 440944 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 485-158 chr2 220412379 220412643 + 3 NA Intergenic L1PREC2|LINE|L1 -505946 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 417-200 chr4 59203582 59203803 + 3 NA Intergenic Intergenic 190119 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 452-291 chr9 37213522 37213727 + 3 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 93026 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 599-90 chr3 110954445 110954654 + 3 NA Intergenic Intergenic 115410 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 552-10 chr1 190359349 190359665 + 3 NA intron (NM_199051, intron 2 of 7) FLAM_A|SINE|Alu 116503 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 320-89 chr11 62771008 62771181 + 3 NA promoter-TSS (NM_006473) promoter-TSS (NM_006473) -302 NM_006473 10629 Hs.714400 NM_006473 ENSG00000162227 TAF6L PAF65A TATA-box binding protein associated factor 6 like protein-coding 333-19 chr1 79920683 79920817 + 3 NA Intergenic Intergenic -615005 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 394-162 chr2 50056236 50056403 + 3 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -82116 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 566-42 chr12 133052793 133053211 + 3 NA intron (NM_001127372, intron 4 of 4) intron (NM_001127372, intron 4 of 4) 15420 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 517-201 chr4 100375955 100376221 + 3 NA Intergenic L1MB3|LINE|L1 19159 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 390-401 chr8 134285132 134285287 + 3 NA Intergenic L2b|LINE|L2 -312862 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 809-59 chrX 101909605 101910037 + 3 NA intron (NM_001282401, intron 1 of 8) L1MA1|LINE|L1 22206 NM_001282400 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 766-55 chr5 21632702 21633121 + 3 NA Intergenic Intergenic 173431 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 491-243 chr7 29052310 29052588 + 3 NA intron (NM_001371256, intron 15 of 16) (A)n|Simple_repeat|Simple_repeat 72482 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 582-8 chr10 52407767 52408101 + 3 NA Intergenic Intergenic 47338 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 422-266 chr6 109275275 109275470 + 3 NA intron (NR_152435, intron 23 of 45) L1MB7|LINE|L1 106367 NM_001346500 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 534-159 chr3 18244256 18244555 + 3 NA intron (NR_161333, intron 4 of 4) MIRb|SINE|MIR 180934 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 249-392 chr7 104314842 104314956 + 3 NA Intergenic L1MB2|LINE|L1 -13757 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 399-211 chr3 86472817 86472976 + 3 NA Intergenic Intergenic -9047 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 591-161 chr8 33120730 33121083 + 3 NA Intergenic Intergenic 352240 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 451-25 chr10 28194941 28195163 + 3 NA intron (NR_134518, intron 2 of 16) L1MB8|LINE|L1 87071 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 758-35 chr19 29175564 29176002 + 3 NA Intergenic L1MA2|LINE|L1 37368 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 473-232 chr5 150815640 150815859 + 3 NA Intergenic L1M4|LINE|L1 -30772 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 1225-8 chr8 29891785 29892425 + 3 NA Intergenic L2|LINE|L2 -29408 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 634-50 chr13 84045717 84045955 + 3 NA Intergenic Intergenic -94766 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 438-108 chr2 12020472 12020666 + 3 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 13453 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 574-42 chr14 82138219 82138461 + 3 NA Intergenic Intergenic -395202 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 228-352 chr8 126165908 126166004 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -159539 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 716-29 chr16 71349587 71350010 + 3 NA Intergenic Intergenic -8915 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 496-142 chr2 153769721 153770003 + 3 NA Intergenic L1PB4|LINE|L1 -102060 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 494-110 chr18 66217175 66217423 + 3 NA Intergenic Intergenic 386791 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 894-9 chr11 78618427 78618871 + 3 NA Intergenic MLT2A1|LTR|ERVL -43785 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 607-44 chr15 42098130 42098442 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 -3724 NM_178034 283748 Hs.380225 NM_178034 ENSG00000159337 PLA2G4D cPLA2delta phospholipase A2 group IVD protein-coding 622-50 chr2 13686736 13687049 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 -679879 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 856-3 chr1 112104122 112104507 + 3 NA Intergenic (TATAT)n|Simple_repeat|Simple_repeat 113778 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 433-252 chr6 141957411 141957570 + 3 NA Intergenic PABL_B-int|LTR|ERV1 131309 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 317-229 chr2 78738603 78738777 + 3 NA Intergenic Intergenic 193159 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 366-51 chr10 61634330 61634538 + 3 NA Intergenic Intergenic -28495 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 723-50 chr3 102596891 102597249 + 3 NA Intergenic Intergenic 162055 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 573-155 chr5 124153533 124153794 + 3 NA intron (NR_125774, intron 4 of 5) L1MD1|LINE|L1 284857 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 702-86 chr6 62016178 62016547 + 3 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 269863 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 476-54 chr11 109465775 109466065 + 3 NA Intergenic L1MCa|LINE|L1 43730 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 505-122 chr19 12344649 12344854 + 3 NA Intergenic L1MB4|LINE|L1 -11118 NM_001363608 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 515-163 chr3 83211523 83211772 + 3 NA Intergenic Intergenic 1225505 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 538-247 chr8 137293528 137293891 + 3 NA Intergenic Intergenic 119879 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 485-99 chr16 82395836 82396069 + 3 NA Intergenic L2c|LINE|L2 -225728 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 564-81 chr18 49737093 49737368 + 3 NA Intergenic L1M5|LINE|L1 76303 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 409-73 chr14 52770800 52770950 + 3 NA intron (NM_001130701, intron 11 of 11) intron (NM_001130701, intron 11 of 11) 20732 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 479-91 chr19 29636421 29636677 + 3 NA Intergenic MIR3|SINE|MIR -28912 NM_024310 79156 Hs.466383 NM_024310 ENSG00000166289 PLEKHF1 APPD|LAPF|PHAFIN1|ZFYVE15 pleckstrin homology and FYVE domain containing 1 protein-coding 238-312 chr5 180267093 180267200 + 3 NA intron (NM_001364608, intron 4 of 12) L1ME4a|LINE|L1 13462 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 600-124 chr8 36178897 36179181 + 3 NA Intergenic L1MEc|LINE|L1 -468719 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 664-5 chr1 39908645 39909068 + 3 NA Intergenic MER77B|LTR|ERVL -6939 NM_005376 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 MYCL proto-oncogene, bHLH transcription factor protein-coding 445-51 chr12 46501859 46502150 + 3 NA intron (NR_125380, intron 3 of 3) L1M3d|LINE|L1 117897 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 1057-12 chr3 25728561 25729154 + 3 NA intron (NM_018297, intron 10 of 11) intron (NM_018297, intron 10 of 11) 54586 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 431-241 chr6 38653897 38654173 + 3 NA Intergenic L2a|LINE|L2 -14106 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 398-381 chr9 31952391 31952642 + 3 NA Intergenic L1MA9|LINE|L1 -432087 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 534-9 chr1 107833778 107834151 + 3 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -63259 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 367-422 chr7 54038248 54038473 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -226429 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 672-32 chr16 6652924 6653340 + 3 NA intron (NM_018723, intron 2 of 15) L2a|LINE|L2 -120677 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 489-111 chr17 73580743 73580985 + 3 NA intron (NM_001144952, intron 1 of 44) Tigger4a|DNA|TcMar-Tigger 63581 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 676-29 chr14 27577158 27577508 + 3 NA intron (NR_148991, intron 2 of 2) L1PA16|LINE|L1 -35255 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 659-87 chr5 22874093 22874458 + 3 NA Intergenic Intergenic -20931 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 416-29 chr10 9547385 9547660 + 3 NA Intergenic Intergenic -251929 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 340-574 chr9 118750503 118750715 + 3 NA Intergenic L1M3c|LINE|L1 70938 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 437-254 chr7 50549920 50550198 + 3 NA intron (NM_001082971, intron 1 of 14) Tigger1|DNA|TcMar-Tigger 11012 NM_001242887 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 473-8 chr1 95334601 95334866 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR -16470 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 890-44 chrX 45577961 45578363 + 3 NA Intergenic L1MA8|LINE|L1 72774 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 893-30 chr3 61140349 61140888 + 3 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 110834 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 316-414 chr4 163952716 163952868 + 3 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) 244919 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 350-493 chr7 106994910 106995121 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -49690 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 301-282 chr3 89171463 89171694 + 3 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 63957 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 734-47 chr3 95574905 95575256 + 3 NA Intergenic Intergenic 108113 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 379-328 chr7 119956615 119956829 + 3 NA Intergenic Intergenic -49347 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 240-311 chr4 30621871 30622048 + 3 NA Intergenic Intergenic -98410 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 518-245 chr5 153253098 153253297 + 3 NA Intergenic L1M2|LINE|L1 -237327 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 1102-8 chr2 67568472 67568984 + 3 NA Intergenic Intergenic 171395 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 596-134 chr5 144009668 144010029 + 3 NA Intergenic MER57A-int|LTR|ERV1 160811 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 423-188 chr4 29038953 29039245 + 3 NA Intergenic Intergenic 42315 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 880-17 chr18 60429584 60430084 + 3 NA Intergenic L1M5|LINE|L1 -57059 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 342-48 chr1 238216821 238217037 + 3 NA Intergenic Intergenic 269088 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 717-59 chr3 184012710 184013058 + 3 NA intron (NR_135125, intron 2 of 6) intron (NR_135125, intron 2 of 6) 5000 NR_135125 10057 Hs.368563 NM_005688 ENSG00000114770 ABCC5 ABC33|EST277145|MOAT-C|MOATC|MRP5|SMRP|pABC11 ATP binding cassette subfamily C member 5 protein-coding 463-147 chr2 134509044 134509241 + 3 NA intron (NM_030923, intron 4 of 7) MER3|DNA|hAT-Charlie 209858 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 638-166 chr8 142893711 142894068 + 3 NA Intergenic L1MA2|LINE|L1 -14069 NM_000497 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 501-239 chr7 49903036 49903349 + 3 NA intron (NR_136188, intron 2 of 3) L1MD2|LINE|L1 127859 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 426-130 chr2 38655277 38655477 + 3 NA Intergenic Intergenic -10737 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 460-53 chr11 106486584 106486839 + 3 NA Intergenic Intergenic 235304 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 474-162 chr2 223408482 223408716 + 3 NA Intergenic Intergenic 193762 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 336-537 chr8 69503257 69503473 + 3 NA intron (NR_156414, intron 2 of 20) intron (NR_156414, intron 2 of 20) 10518 NR_156415 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 543-203 chr5 54634730 54634915 + 3 NA Intergenic Intergenic 68502 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 289-64 chr10 76607048 76607257 + 3 NA Intergenic L1MEg|LINE|L1 -280892 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 490-123 chr18 80055502 80055774 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -11618 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 571-122 chr4 83629942 83630288 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 94007 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 466-99 chr17 11013269 11013597 + 3 NA Intergenic L2b|LINE|L2 -175346 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 476-229 chr5 122530382 122530565 + 3 NA Intergenic Intergenic -51386 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 593-152 chr8 112260107 112260551 + 3 NA intron (NM_001363185, intron 57 of 66) intron (NM_001363185, intron 57 of 66) -383164 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 399-187 chr21 19551842 19552061 + 3 NA Intergenic LTR8|LTR|ERV1 347804 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 506-161 chr2 200052915 200053172 + 3 NA Intergenic Intergenic -97552 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 302-37 chr10 18102961 18103163 + 3 NA Intergenic LTR90B|LTR|LTR -37362 NM_201572 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 489-138 chr2 83699473 83699750 + 3 NA Intergenic L1ME3G|LINE|L1 176797 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 357-91 chr12 124213202 124213370 + 3 NA intron (NM_001347902, intron 3 of 4) MER63A|DNA|hAT-Blackjack -75878 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 467-234 chr5 141086150 141086386 + 3 NA Intergenic Intergenic -8237 NR_105056 101926905 Hs.570900 NR_105056 LOC101926905 - uncharacterized LOC101926905 ncRNA 575-114 chr3 44528179 44528501 + 3 NA Intergenic Intergenic -17723 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 370-29 chr1 247155908 247156060 + 3 NA 3' UTR (NM_001297568, exon 4 of 4) 3' UTR (NM_001297568, exon 4 of 4) 16033 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 320-25 chr1 164059707 164059857 + 3 NA Intergenic Intergenic -499578 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 539-127 chr2 161562323 161562562 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -54540 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 469-113 chr17 71553885 71554062 + 3 NA Intergenic MIR1_Amn|SINE|MIR -351794 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 763-35 chr20 41286098 41286474 + 3 NA intron (NM_015035, intron 1 of 3) L1MEd|LINE|L1 13834 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 438-40 chr10 115484394 115484607 + 3 NA intron (NM_207303, intron 24 of 28) intron (NM_207303, intron 24 of 28) 391135 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 326-116 chr12 4769550 4769722 + 3 NA intron (NM_017417, intron 10 of 10) L1ME4a|LINE|L1 -39540 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 527-157 chr21 23651109 23651474 + 3 NA Intergenic AluSp|SINE|Alu -266456 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 545-178 chr5 26653933 26654278 + 3 NA Intergenic Intergenic 384481 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 468-170 chr2 223584704 223584915 + 3 NA Intergenic Intergenic 17552 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 931-12 chr2 17069622 17070153 + 3 NA Intergenic MLT2A2|LTR|ERVL -404053 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 445-131 chr2 115788481 115788659 + 3 NA intron (NM_001321912, intron 18 of 25) L1MEc|LINE|L1 444755 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 387-273 chr5 26029170 26029354 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 838309 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 475-30 chr10 89833550 89833822 + 3 NA intron (NR_038382, intron 2 of 3) HAL1|LINE|L1 4193 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 555-125 chr3 25952534 25952839 + 3 NA Intergenic Intergenic -78991 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 452-242 chr7 4317037 4317247 + 3 NA Intergenic L1ME4a|LINE|L1 -182305 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 408-25 chr1 185772199 185772358 + 3 NA intron (NM_031935, intron 1 of 106) L2b|LINE|L2 37887 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 459-6 chr1 50165519 50165811 + 3 NA intron (NM_001144774, intron 2 of 6) (AT)n|Simple_repeat|Simple_repeat 55832 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 599-16 chr10 83421641 83421919 + 3 NA Intergenic Intergenic 255309 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 722-10 chr10 20717134 20717547 + 3 NA Intergenic Intergenic 165370 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 424-9 chr1 118980514 118980711 + 3 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 7731 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 442-227 chr5 27747741 27747973 + 3 NA Intergenic L1PA17|LINE|L1 275565 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 425-245 chr5 153165862 153166060 + 3 NA Intergenic Helitron3Na_Mam|RC|Helitron -193612 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 398-313 chr7 10456951 10457120 + 3 NA intron (NR_147499, intron 2 of 2) L1ME2|LINE|L1 -245641 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 315-93 chr11 107636430 107636582 + 3 NA intron (NM_001308018, intron 7 of 12) intron (NM_001308018, intron 7 of 12) 45359 NM_018712 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 610-49 chr14 49140027 49140344 + 3 NA Intergenic Intergenic 446195 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 520-196 chr3 164032033 164032342 + 3 NA Intergenic MER57B2|LTR|ERV1 139369 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 523-279 chr8 131578043 131578327 + 3 NA Intergenic MIRb|SINE|MIR -325908 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 484-181 chr3 113923301 113923503 + 3 NA intron (NM_001172105, intron 5 of 12) L1HS|LINE|L1 -24499 NM_001363952 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 529-140 chr3 106552886 106553167 + 3 NA Intergenic Intergenic -683625 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 325-21 chr1 118607022 118607221 + 3 NA Intergenic L1MA10|LINE|L1 381222 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 510-238 chr5 170736281 170736464 + 3 NA 3' UTR (NM_001034838, exon 8 of 8) 3' UTR (NM_001034838, exon 8 of 8) -47347 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 1046-20 chr7 47004833 47005480 + 3 NA Intergenic L1MC2|LINE|L1 -308034 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 182-103 chr21 14116612 14116715 + 3 NA intron (NM_001303001, intron 7 of 7) HERV1_I-int|LTR|ERV1 90286 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 485-265 chr7 48762917 48763339 + 3 NA Intergenic Intergenic -161419 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 405-117 chr18 12541046 12541226 + 3 NA intron (NM_020148, intron 3 of 15) L1MEg|LINE|L1 108362 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 368-152 chr14 82797567 82797710 + 3 NA Intergenic Intergenic 155006 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 650-48 chr2 17318813 17319193 + 3 NA Intergenic L3|LINE|CR1 199437 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 352-283 chr20 42217817 42217995 + 3 NA intron (NM_133170, intron 16 of 31) MIRb|SINE|MIR -467577 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 195-4 chr1 50970874 50970980 + 3 NA intron (NM_078626, intron 1 of 1) intron (NM_078626, intron 1 of 1) 682 NM_078626 1031 Hs.525324 NM_001262 ENSG00000123080 CDKN2C INK4C|p18|p18-INK4C cyclin dependent kinase inhibitor 2C protein-coding 550-119 chr2 114489353 114489676 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 27937 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 659-126 chr8 144080175 144080671 + 3 NA TTS (NR_106906) TTS (NR_106906) 549 NR_106906 102465510 NR_106906 ENSG00000284200 MIR6847 hsa-mir-6847 microRNA 6847 ncRNA 522-265 chr8 142691830 142692107 + 3 NA Intergenic MER4-int|LTR|ERV1 -8143 NM_001160355 54742 Hs.69517 NM_017527 ENSG00000160886 LY6K CT97|HSJ001348|URLC10|ly-6K lymphocyte antigen 6 family member K protein-coding 464-244 chr7 53665108 53665283 + 3 NA intron (NR_038371, intron 5 of 5) L1PB2|LINE|L1 146736 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 534-156 chr22 44517014 44517269 + 3 NA Intergenic Intergenic -18908 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 774-39 chr2 20963618 20964014 + 3 NA Intergenic Intergenic 80257 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 635-21 chr12 16099192 16099424 + 3 NA Intergenic Intergenic 178377 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 342-454 chr6 56850243 56850400 + 3 NA intron (NR_125866, intron 1 of 3) intron (NR_125866, intron 1 of 3) 1595 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 451-243 chr8 126149947 126150201 + 3 NA Intergenic L1PA16|LINE|L1 -175421 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 380-160 chr18 7743917 7744094 + 3 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 176689 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 701-55 chr20 58526665 58527076 + 3 NA intron (NR_034147, intron 5 of 6) L1ME1|LINE|L1 -11471 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 435-89 chr16 17032881 17033167 + 3 NA Intergenic L1ME3A|LINE|L1 -101480 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 308-101 chr12 15245677 15245796 + 3 NA Intergenic Intergenic -24319 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 268-348 chr6 84600463 84600597 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -88928 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 563-187 chr8 133935355 133935732 + 3 NA Intergenic PRIMA4_LTR|LTR|ERV1 49047 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 281-438 chr8 111262426 111262600 + 3 NA Intergenic LTR16B|LTR|ERVL -26310 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 857-15 chr11 131279600 131280323 + 3 NA Intergenic Intergenic -90654 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 1054-14 chr7 24082857 24083659 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -200932 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 450-92 chr15 54367051 54367252 + 3 NA intron (NM_001329919, intron 16 of 31) intron (NM_001329919, intron 16 of 31) 354503 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 534-167 chr3 130588995 130589194 + 3 NA exon (NM_001102608, exon 11 of 36) exon (NM_001102608, exon 11 of 36) 28760 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 511-74 chr15 62607191 62607446 + 3 NA Intergenic Intergenic 37863 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 995-14 chr2 198826020 198826459 + 3 NA Intergenic Tigger12|DNA|TcMar-Tigger -451142 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 461-98 chr16 72591695 72591939 + 3 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 73153 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 376-296 chr4 129546395 129546574 + 3 NA Intergenic L1M5|LINE|L1 224994 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 536-179 chr5 6186909 6187148 + 3 NA Intergenic MER21C|LTR|ERVL 150264 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 355-94 chr11 80042907 80043121 + 3 NA Intergenic Intergenic -601984 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 798-40 chr4 21449789 21450091 + 3 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 14818 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 553-49 chr12 73094741 73095020 + 3 NA Intergenic Intergenic -64310 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 375-195 chr2 13698968 13699239 + 3 NA Intergenic Intergenic -692090 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 263-196 chr2 57355470 57355606 + 3 NA Intergenic Intergenic -552113 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 972-24 chr8 83871964 83872318 + 3 NA Intergenic L2|LINE|L2 -310646 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 450-69 chr12 121460320 121460675 + 3 NA intron (NM_001005366, intron 12 of 22) AluJb|SINE|Alu -16145 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 927-23 chr7 79949843 79950298 + 3 NA Intergenic Intergenic -184761 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 986-34 chr8 136551960 136552492 + 3 NA intron (NR_147196, intron 2 of 5) L1M2|LINE|L1 21428 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 409-229 chr4 137846115 137846271 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -242821 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 496-145 chr2 161482932 161483206 + 3 NA Intergenic L1MA5A|LINE|L1 24833 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 322-359 chr3 180366868 180366999 + 3 NA Intergenic L1MC1|LINE|L1 -47240 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 573-113 chr22 33143059 33143326 + 3 NA Intergenic Intergenic 34663 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 977-18 chr8 131152820 131153240 + 3 NA Intergenic Intergenic -112121 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 793-3 chr1 223473310 223473715 + 3 NA Intergenic L1ME4a|LINE|L1 80097 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 861-26 chr5 57821326 57821852 + 3 NA Intergenic L1MEc|LINE|L1 77573 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 363-398 chr6 156573966 156574125 + 3 NA Intergenic L1MA4A|LINE|L1 195295 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 364-285 chr3 110316515 110316677 + 3 NA Intergenic Intergenic 713768 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 475-195 chr4 24759833 24760031 + 3 NA Intergenic L3b|LINE|CR1 -35641 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 765-13 chr11 117157416 117157817 + 3 NA intron (NR_110269, intron 2 of 7) intron (NR_110269, intron 2 of 7) 13329 NM_001309431 5049 Hs.728488 NM_002572 ENSG00000168092 PAFAH1B2 HEL-S-303 platelet activating factor acetylhydrolase 1b catalytic subunit 2 protein-coding 501-277 chr9 78482973 78483269 + 3 NA Intergenic L1MEf|LINE|L1 185996 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 491-282 chrUn_KI270757v1 66461 66764 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 572-152 chr6 53054976 53055177 + 3 NA intron (NM_014920, intron 1 of 13) intron (NM_014920, intron 1 of 13) 6726 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 391-170 chr2 59816684 59816908 + 3 NA Intergenic Intergenic 566240 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 261-320 chr5 141257598 141257751 + 3 NA Intergenic L1MEf|LINE|L1 12279 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 455-123 chr2 72437613 72437931 + 3 NA intron (NM_001321729, intron 18 of 22) intron (NM_001321729, intron 18 of 22) -289910 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 638-167 chr8 144565133 144565518 + 3 NA intron (NM_025251, intron 2 of 10) L1ME1|LINE|L1 -36214 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 662-50 chr2 145579820 145580144 + 3 NA Intergenic MER20|DNA|hAT-Charlie 912015 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 420-220 chr5 4306441 4306677 + 3 NA Intergenic Intergenic -466922 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 521-26 chr10 33894336 33894659 + 3 NA Intergenic Intergenic -121817 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 765-6 chr10 111971238 111971776 + 3 NA Intergenic L2c|LINE|L2 212258 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 823-24 chr4 136599291 136599820 + 3 NA Intergenic L1MA3|LINE|L1 -594201 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 710-80 chr5 163396548 163396974 + 3 NA Intergenic AluSg|SINE|Alu -40810 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 360-134 chr14 98815527 98815794 + 3 NA Intergenic Intergenic 104047 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 237-272 chr4 104686137 104686281 + 3 NA intron (NR_125926, intron 9 of 9) intron (NR_125926, intron 9 of 9) -191315 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 423-186 chr3 196078116 196078278 + 3 NA intron (NM_001313966, intron 1 of 16) intron (NM_001313966, intron 1 of 16) 3893 NM_003234 7037 Hs.529618 NM_003234 ENSG00000072274 TFRC CD71|IMD46|T9|TFR|TFR1|TR|TRFR|p90 transferrin receptor protein-coding 482-148 chr20 43052950 43053158 + 3 NA intron (NM_133170, intron 1 of 31) L1MB7|LINE|L1 84311 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 576-85 chr2 106777479 106777689 + 3 NA Intergenic L1M4c|LINE|L1 108444 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 474-229 chr5 31362782 31363059 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 169173 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 981-33 chr8 140141620 140142135 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -41342 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 429-98 chr14 95752090 95752245 + 3 NA intron (NR_148060, intron 2 of 2) MSTA|LTR|ERVL-MaLR 36684 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 439-226 chr5 24615783 24616009 + 3 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 29082 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 448-98 chr17 63270025 63270323 + 3 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 170093 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 516-124 chr2 79034323 79034626 + 3 NA Intergenic Intergenic 8772 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 707-35 chr15 98849697 98850004 + 3 NA intron (NM_000875, intron 2 of 20) L1ME4b|LINE|L1 65424 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 522-156 chr20 24194656 24194914 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -4982 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 343-590 chrX 49826314 49826471 + 3 NA Intergenic Intergenic -2868 NM_001318877 9506 Hs.441038 NM_007003 ENSG00000101951 PAGE4 CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4 PAGE family member 4 protein-coding 573-168 chr6 103322763 103322989 + 3 NA Intergenic L1MDa|LINE|L1 1536670 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 429-182 chr21 27575640 27575796 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -146661 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 463-217 chr4 185883022 185883192 + 3 NA intron (NM_021069, intron 1 of 20) L1ME1|LINE|L1 -70851 NM_001145670 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 454-205 chr3 67276497 67276856 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger 51212 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 401-93 chr14 62335070 62335351 + 3 NA Intergenic Intergenic -195237 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 431-12 chr1 76748565 76748746 + 3 NA Intergenic Intergenic 30612 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 1042-3 chr10 82798832 82799404 + 3 NA intron (NR_163252, intron 3 of 8) L2c|LINE|L2 -566198 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 628-131 chr8 91589228 91589537 + 3 NA Intergenic L2c|LINE|L2 340063 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 564-47 chr13 55321959 55322202 + 3 NA Intergenic Intergenic 147626 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 380-131 chr15 26325563 26325717 + 3 NA Intergenic LTR49|LTR|ERV1 209827 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 954-46 chr7 84095480 84096090 + 3 NA intron (NM_006080, intron 4 of 16) intron (NM_006080, intron 4 of 16) 99004 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 412-199 chr22 28526075 28526293 + 3 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR 66315 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 575-184 chr7 50115064 50115333 + 3 NA intron (NM_001161834, intron 2 of 8) L1MEc|LINE|L1 19112 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 351-434 chr7 19605088 19605265 + 3 NA Intergenic L1MC5|LINE|L1 100260 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 384-30 chr10 11728846 11729039 + 3 NA Intergenic MER87B|LTR|ERV1 -13440 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 543-201 chr5 42116379 42116593 + 3 NA Intergenic HERV9NC-int|LTR|ERV1 58859 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 813-47 chr8 56331836 56332417 + 3 NA Intergenic AluSx1|SINE|Alu -11350 NM_001318050 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 572-30 chr11 132416840 132417095 + 3 NA 3' UTR (NM_001012393, exon 8 of 8) 3' UTR (NM_001012393, exon 8 of 8) 132665 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 494-75 chr15 25080784 25081103 + 3 NA promoter-TSS (NR_003330) promoter-TSS (NR_003330) -343 NR_003330 100033427 NR_003330 ENSG00000207174 SNORD116-15 HBII-85-15 small nucleolar RNA, C/D box 116-15 snoRNA 1175-2 chr17 72354726 72355344 + 3 NA non-coding (NR_135222, exon 4 of 4) non-coding (NR_135222, exon 4 of 4) 12224 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 476-189 chr3 191892369 191892563 + 3 NA Intergenic Intergenic -346164 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 493-315 chr9 93789823 93790033 + 3 NA Intergenic L1MB4|LINE|L1 -29429 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 754-37 chr19 58108259 58108747 + 3 NA non-coding (NR_027135, exon 2 of 2) non-coding (NR_027135, exon 2 of 2) 9923 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 320-87 chr11 57924633 57924877 + 3 NA Intergenic L1M2|LINE|L1 -99126 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 353-36 chr1 216674330 216674560 + 3 NA intron (NM_001243506, intron 2 of 6) intron (NM_001243506, intron 2 of 6) 48984 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 656-123 chr8 33968208 33968489 + 3 NA Intergenic L1MA5A|LINE|L1 -368242 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 675-98 chr8 122946204 122946548 + 3 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 79396 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 269-113 chr14 46047801 46047953 + 3 NA Intergenic L1M1|LINE|L1 -16282 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 332-57 chr10 43009944 43010149 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 12483 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 389-351 chr7 117307647 117307801 + 3 NA intron (NM_003391, intron 3 of 4) intron (NM_003391, intron 3 of 4) 15334 NM_003391 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 344-356 chr4 53027276 53027421 + 3 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 165031 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 487-252 chr6 126902389 126902558 + 3 NA Intergenic Intergenic -216198 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 518-71 chr13 36726760 36726935 + 3 NA Intergenic Intergenic 52827 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 429-256 chr6 98369621 98369860 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 345209 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 353-432 chr5 176567777 176567935 + 3 NA intron (NM_017675, intron 3 of 31) AluJr4|SINE|Alu 18514 NM_017675 54825 Hs.4205 NM_017675 ENSG00000074276 CDHR2 PCDH24|PCLKC cadherin related family member 2 protein-coding 900-11 chr14 57350491 57350938 + 3 NA Intergenic AluJb|SINE|Alu -39872 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 450-8 chr1 106307458 106307664 + 3 NA Intergenic L1MA4|LINE|L1 -279308 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 680-46 chr17 82739854 82740249 + 3 NA intron (NM_022158, intron 2 of 5) AluSx3|SINE|Alu 4436 NM_022158 64122 Hs.151135 NM_022158 ENSG00000167363 FN3K - fructosamine 3 kinase protein-coding 405-226 chr4 59073344 59073568 + 3 NA Intergenic L1MEc|LINE|L1 59883 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 809-6 chr12 14148805 14149337 + 3 NA Intergenic Intergenic -168715 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 623-133 chr9 26171955 26172393 + 3 NA Intergenic Intergenic 105499 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 387-23 chr1 218689403 218689586 + 3 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 179399 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 524-258 chr8 83380230 83380461 + 3 NA Intergenic Intergenic -23413 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 594-25 chr11 50763211 50763480 + 3 NA Intergenic ALR/Alpha|Satellite|centr 354198 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 519-250 chr9 69629864 69630061 + 3 NA intron (NM_001163, intron 1 of 12) L2a|LINE|L2 42409 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 474-198 chr4 30927080 30927288 + 3 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) 206815 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 472-275 chr6 76944112 76944318 + 3 NA Intergenic L1MA1|LINE|L1 -350592 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 490-118 chr18 43822068 43822390 + 3 NA Intergenic Intergenic -544739 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 272-85 chr12 9743083 9743173 + 3 NA Intergenic L1M4|LINE|L1 -9829 NM_001253750 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 276-143 chr14 45628454 45628607 + 3 NA Intergenic Intergenic 87072 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 833-9 chr15 80365877 80366458 + 3 NA Intergenic LTR9|LTR|ERV1 -24362 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 445-251 chr7 51560271 51560535 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -167147 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 638-22 chr11 15530385 15530722 + 3 NA Intergenic L1MA6|LINE|L1 -113332 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 391-109 chr14 66433577 66433820 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -52673 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 566-71 chr17 65939458 65939804 + 3 NA intron (NM_001353129, intron 18 of 26) L1MA7|LINE|L1 -113088 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 429-324 chr9 31712544 31712815 + 3 NA Intergenic Intergenic -331189 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 445-278 chr8 126257321 126257584 + 3 NA Intergenic L1ME3D|LINE|L1 -68043 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 506-11 chr1 113466672 113466974 + 3 NA intron (NM_001142782, intron 1 of 20) L1MA4|LINE|L1 76308 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 535-179 chr4 31816707 31817018 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -180517 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 384-156 chr2 5570610 5570830 + 3 NA Intergenic Intergenic 120398 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 311-222 chr19 3916210 3916395 + 3 NA intron (NM_033064, intron 9 of 12) L1MB3|LINE|L1 -16801 NM_001289117 27231 Hs.135458 NM_014446 ENSG00000077009 NMRK2 ITGB1BP3|MIBP|NRK2 nicotinamide riboside kinase 2 protein-coding 680-93 chr4 148782809 148783259 + 3 NA Intergenic Intergenic 159344 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 439-133 chr2 73147866 73148104 + 3 NA Intergenic Intergenic -35037 NM_001371272 580-72 chr19 34946488 34946772 + 3 NA Intergenic HERVL74-int|LTR|ERVL 17599 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 1040 chr10 75285137 75285688 + 3 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -10971 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 490-120 chr18 64912859 64913049 + 3 NA Intergenic Intergenic -652899 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 490-12 chr1 82636755 82636981 + 3 NA Intergenic Intergenic -266315 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 793-30 chr20 59837084 59837417 + 3 NA intron (NM_080672, intron 9 of 12) intron (NM_080672, intron 9 of 12) 96387 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 252-450 chr9 95862361 95862452 + 3 NA intron (NR_023390, intron 1 of 2) L1M3|LINE|L1 -13285 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 352-429 chr5 124918712 124918893 + 3 NA Intergenic Intergenic -118029 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 536-147 chr20 42108363 42108673 + 3 NA intron (NM_133170, intron 24 of 31) intron (NM_133170, intron 24 of 31) -490141 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 597-36 chr11 85198496 85198814 + 3 NA intron (NM_001142699, intron 4 of 27) intron (NM_001142699, intron 4 of 27) -275234 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 294-66 chr11 82212695 82212856 + 3 NA intron (NR_120571, intron 3 of 7) L1MA9|LINE|L1 191138 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 416-82 chr12 4204148 4204343 + 3 NA Intergenic Intergenic -69517 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 430-210 chr4 42981238 42981399 + 3 NA intron (NM_001080476, intron 2 of 3) L1MA8|LINE|L1 88052 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 1036-18 chr3 13701731 13702182 + 3 NA intron (NR_027103, intron 2 of 5) L2c|LINE|L2 51235 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 585-16 chr10 59496420 59496791 + 3 NA Intergenic L1MA5|LINE|L1 -133424 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 491-19 chr10 65415042 65415355 + 3 NA Intergenic Intergenic -156227 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 326-371 chr4 57451123 57451370 + 3 NA intron (NR_125907, intron 4 of 5) L1MA8|LINE|L1 25374 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 457-178 chr4 96977662 96977911 + 3 NA Intergenic MIR3|SINE|MIR -389140 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 1318-2 chr5 26161427 26162089 + 3 NA Intergenic L1MC3|LINE|L1 876828 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 500-25 chr10 39156235 39156466 + 3 NA Intergenic ALR/Alpha|Satellite|centr 459754 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 716-87 chr8 135024226 135024663 + 3 NA Intergenic Intergenic 174509 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 1135-5 chr21 19101811 19102313 + 3 NA Intergenic Intergenic -342250 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 431-118 chr2 13127656 13127861 + 3 NA Intergenic Intergenic -120745 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 401-348 chr9 93769040 93769196 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -50239 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 566-180 chr7 47194979 47195199 + 3 NA Intergenic Intergenic 269714 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 301-422 chr7 48938061 48938259 + 3 NA Intergenic Intergenic 13613 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 781-12 chr12 66087565 66088160 + 3 NA Intergenic AluSx|SINE|Alu 42888 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 295-21 chr1 166476344 166476466 + 3 NA intron (NR_146890, intron 2 of 2) intron (NR_146890, intron 2 of 2) 13634 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 329-147 chr13 110710883 110711103 + 3 NA Intergenic Intergenic -1630 NM_198217 3621 Hs.46700 NM_005537 ENSG00000153487 ING1 p24ING1c|p33|p33ING1|p33ING1b|p47|p47ING1a inhibitor of growth family member 1 protein-coding 461-234 chr6 68863157 68863356 + 3 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 227974 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 630-109 chr5 101743521 101743846 + 3 NA Intergenic L1PA15|LINE|L1 552601 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 826-22 chr16 75171315 75171813 + 3 NA 3' UTR (NM_153688, exon 4 of 4) 3' UTR (NM_153688, exon 4 of 4) 22513 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 717-21 chr11 81471049 81471401 + 3 NA Intergenic MER83C|LTR|ERV1 419611 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 759-27 chr18 8533112 8533529 + 3 NA Intergenic L1PA14|LINE|L1 -76125 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 535-128 chr2 81778312 81778604 + 3 NA Intergenic L1MEc|LINE|L1 -311512 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 473-239 chr6 51116472 51116654 + 3 NA Intergenic Intergenic 297692 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 421-175 chr21 29881677 29881936 + 3 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 58190 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 850-33 chr4 79389903 79390502 + 3 NA Intergenic Intergenic 18026 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 478-236 chr5 45990982 45991143 + 3 NA Intergenic ALR/Alpha|Satellite|centr -294682 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 513-138 chr2 114747476 114747809 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 85906 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 692-47 chr2 82085235 82085724 + 3 NA Intergenic Intergenic -618533 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 438-249 chr7 10036339 10036573 + 3 NA Intergenic Intergenic 402186 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 606-104 chr3 3294586 3294791 + 3 NA Intergenic L1PA16|LINE|L1 -114971 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 727-47 chr2 112940711 112941000 + 3 NA Intergenic Charlie17|DNA|hAT-Charlie 25662 NM_173205 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 463-238 chr5 107842731 107842991 + 3 NA Intergenic Intergenic -171924 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 608-121 chr5 38767557 38767826 + 3 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -47418 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 991-26 chrX 134628709 134629283 + 3 NA intron (NM_001316887, intron 2 of 3) intron (NM_001316887, intron 2 of 3) 29475 NM_021796 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2B|OOSP2L placenta enriched 1 protein-coding 384-285 chr5 21870149 21870322 + 3 NA intron (NM_004061, intron 6 of 14) THE1A|LTR|ERVL-MaLR -14219 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 595-68 chr17 65867536 65867983 + 3 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -41216 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 487-95 chr15 24728072 24728318 + 3 NA Intergenic MER54B|LTR|ERVL 52801 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 415-257 chr7 51962740 51962895 + 3 NA Intergenic Intergenic -569561 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 441-223 chr6 66530190 66530344 + 3 NA Intergenic L1MEf|LINE|L1 742388 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 385-212 chr20 45553422 45553578 + 3 NA intron (NM_130896, intron 4 of 5) intron (NM_130896, intron 4 of 5) -6099 NM_001198986 100526773 Hs.274876 NM_001198986 ENSG00000249139 EPPIN-WFDC6 SPINLW1-WFDC6 EPPIN-WFDC6 readthrough protein-coding 392-196 chr3 792224 792394 + 3 NA intron (NR_110118, intron 2 of 3) intron (NR_110118, intron 2 of 3) 200204 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 657-90 chr7 45300251 45300588 + 3 NA Intergenic L1MA9|LINE|L1 142628 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 331-183 chr16 5300866 5301094 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -203160 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 338-180 chr15 35246784 35246949 + 3 NA Intergenic Intergenic 9540 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 655-82 chr3 177323460 177323813 + 3 NA TTS (NR_047465) TTS (NR_047465) 29194 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 452-265 chr8 75754283 75754460 + 3 NA Intergenic Intergenic 214403 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 948-31 chr5 158524236 158524807 + 3 NA Intergenic Intergenic -114748 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 401-306 chr7 114686631 114686792 + 3 NA intron (NR_033767, intron 17 of 17) intron (NR_033767, intron 17 of 17) 33366 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 239-234 chr3 39159745 39159862 + 3 NA Intergenic L1ME4b|LINE|L1 -5162 NM_001320560 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 525-255 chr8 43378034 43378294 + 3 NA Intergenic MER101-int|LTR|ERV1 85722 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 475-118 chr19 58103903 58104120 + 3 NA intron (NM_001145542, intron 1 of 6) Tigger1|DNA|TcMar-Tigger -5648 NM_001145543 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 338-494 chr7 22799794 22799956 + 3 NA Intergenic Intergenic 22974 NM_019059 54543 Hs.112318 NM_019059 ENSG00000196683 TOMM7 TOM7 translocase of outer mitochondrial membrane 7 protein-coding 420-215 chr4 177136540 177136778 + 3 NA Intergenic Intergenic -173215 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 470-107 chr19 22629264 22629571 + 3 NA Intergenic Intergenic -4907 NM_020855 57615 Hs.232108 NM_020855 ENSG00000229676 ZNF492 ZNF115 zinc finger protein 492 protein-coding 334-480 chr6 156345101 156345262 + 3 NA Intergenic Intergenic -33569 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 356-226 chr2 19294584 19294822 + 3 NA Intergenic Intergenic -53726 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 928-7 chr15 97030381 97030779 + 3 NA Intergenic L1MD1|LINE|L1 247145 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 370-449 chr8 121387807 121388043 + 3 NA Intergenic Intergenic -251421 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 909-12 chr2 259415 259899 + 3 NA intron (NM_001282682, intron 1 of 10) L1MC|LINE|L1 1473 NR_104227 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 464-127 chr2 112711302 112711692 + 3 NA Intergenic MER46C|DNA|TcMar-Tigger -9989 NM_001350494 284958 Hs.589714 NM_001350494 ENSG00000144130 NT5DC4 - 5'-nucleotidase domain containing 4 protein-coding 528-92 chr15 49762563 49762814 + 3 NA Intergenic L1MB1|LINE|L1 141640 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 499-276 chr8 140394624 140394871 + 3 NA intron (NM_001160372, intron 7 of 22) intron (NM_001160372, intron 7 of 22) 62997 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 547-14 chr10 16276045 16276379 + 3 NA Intergenic Intergenic -160731 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 400-139 chr18 10204991 10205216 + 3 NA Intergenic MIR|SINE|MIR 209267 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 902-41 chr8 136189475 136189904 + 3 NA Intergenic Intergenic -341109 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 404-161 chr2 62214654 62214884 + 3 NA promoter-TSS (NM_001319075) promoter-TSS (NM_001319075) -752 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 575-189 chr7 104748755 104749027 + 3 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 55201 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 452-78 chr14 52769292 52769504 + 3 NA intron (NM_001130701, intron 11 of 11) intron (NM_001130701, intron 11 of 11) 22209 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 694-42 chr15 37673411 37673654 + 3 NA Intergenic HAL1M8|LINE|L1 -261075 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 991-20 chr5 57270868 57271380 + 3 NA Intergenic L2c|LINE|L2 57050 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 115-11 chr13 54215540 54215582 + 3 NA Intergenic Intergenic -82690 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 481-142 chr2 67550049 67550323 + 3 NA Intergenic MIR|SINE|MIR 152853 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 651-58 chr2 33848817 33849197 + 3 NA intron (NR_126403, intron 1 of 5) MER4B-int|LTR|ERV1 -120790 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 582-89 chr20 57122991 57123242 + 3 NA Intergenic Intergenic -90580 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 610-168 chr8 16804277 16804527 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 197943 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 467-175 chr3 28399993 28400261 + 3 NA intron (NM_001040432, intron 2 of 9) L1PB1|LINE|L1 50978 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 769-16 chr14 64620506 64620964 + 3 NA Intergenic L1ME4a|LINE|L1 70774 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 277-150 chr17 54875454 54875634 + 3 NA Intergenic Intergenic -25147 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 443-217 chr4 38844286 38844515 + 3 NA intron (NM_006068, intron 1 of 1) L1M6|LINE|L1 12417 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 480-203 chr3 192992679 192992959 + 3 NA Intergenic MER41B|LTR|ERV1 -74963 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 518-282 chr7 93006462 93006640 + 3 NA Intergenic Intergenic 111428 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 515-242 chr6 169947937 169948214 + 3 NA Intergenic L1ME1|LINE|L1 -14548 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 1240-2 chr2 52659114 52659619 + 3 NA Intergenic HAL1M8|LINE|L1 43249 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 439-51 chr11 41800143 41800369 + 3 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 85688 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 828-22 chr17 54211544 54211968 + 3 NA Intergenic Intergenic 388829 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 751-54 chr5 4381976 4382440 + 3 NA Intergenic Intergenic -391273 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 581-12 chr10 37787317 37787757 + 3 NA intron (NR_147992, intron 6 of 8) L1ME1|LINE|L1 7638 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 425-102 chr15 95222937 95223130 + 3 NA Intergenic L1MA8|LINE|L1 104067 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 875-40 chrX 55883462 55883977 + 3 NA Intergenic L1PA14|LINE|L1 -24404 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 585-158 chr8 65091504 65091753 + 3 NA Intergenic L1PBa|LINE|L1 88712 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 370-277 chr21 15331500 15331658 + 3 NA Intergenic L1M4|LINE|L1 -266579 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 539-108 chr2 56222148 56222359 + 3 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -36483 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 364-237 chr2 201034130 201034347 + 3 NA intron (NM_001321624, intron 1 of 11) intron (NM_001321624, intron 1 of 11) 37433 NM_001321629 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 534-210 chr6 4184567 4184901 + 3 NA Intergenic L1ME4a|LINE|L1 5295 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 924-41 chr8 136786369 136786965 + 3 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 255869 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 500-42 chr10 128403816 128404134 + 3 NA Intergenic Intergenic 118025 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 357-211 chr2 116198411 116198645 + 3 NA Intergenic L1MC1|LINE|L1 854713 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 614-76 chr22_KI270736v1_random 172442 172679 + 3 NA NA Intergenic NA NA 533-25 chr11 39382541 39382783 + 3 NA Intergenic Intergenic 733804 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 373-258 chr3 25065350 25065551 + 3 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) 236127 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 463-263 chr7 33611501 33611775 + 3 NA intron (NM_001348041, intron 22 of 22) (TAATATA)n|Simple_repeat|Simple_repeat -293277 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 771-61 chr4 78010956 78011558 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -46066 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 761-18 chr16 51013153 51013563 + 3 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -4400 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 571-88 chr2 197742992 197743327 + 3 NA exon (NM_001284362, exon 10 of 11) exon (NM_001284362, exon 10 of 11) 37790 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 488-28 chr10 64661093 64661282 + 3 NA Intergenic L1ME1|LINE|L1 -164341 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 483-184 chr4 38997804 38998070 + 3 NA intron (NM_001303228, intron 2 of 6) L2a|LINE|L2 34472 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 504-90 chr16 56069899 56070230 + 3 NA Intergenic AluJr|SINE|Alu -114033 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 574-8 chr1 215561324 215561629 + 3 NA Intergenic Intergenic -5828 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 712-3 chr1 104459484 104459889 + 3 NA Intergenic Intergenic 386663 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 569-76 chr18 59328087 59328513 + 3 NA 3' UTR (NM_005570, exon 13 of 13) 3' UTR (NM_005570, exon 13 of 13) -9651 NM_181654 339302 Hs.449884 NM_181654 ENSG00000166569 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 741-83 chrX 100277672 100278079 + 3 NA Intergenic Intergenic 132398 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 376-208 chr20 5713086 5713274 + 3 NA Intergenic Intergenic -37207 NM_001303478 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 450-31 chr10 39086919 39087204 + 3 NA Intergenic ALR/Alpha|Satellite|centr 390465 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 703-84 chr7 34704062 34704640 + 3 NA intron (NM_001300934, intron 2 of 6) L1M6|LINE|L1 46112 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 537-92 chr18 47442523 47442739 + 3 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 62135 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 717-71 chr5 128604038 128604481 + 3 NA Intergenic L1MA3|LINE|L1 -66014 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 619-74 chr20 15944128 15944442 + 3 NA intron (NM_001351663, intron 12 of 17) L1ME4a|LINE|L1 -20971 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 671-46 chr2 117285783 117286209 + 3 NA Intergenic L1MA4|LINE|L1 -528695 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 1249-5 chr3 112859009 112859598 + 3 NA Intergenic Intergenic -13353 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 499-191 chr4 175528028 175528288 + 3 NA Intergenic Intergenic 259518 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 517-3 chr1 44236301 44236656 + 3 NA intron (NR_110056, intron 2 of 3) L2c|LINE|L2 7805 NR_046817 100874278 Hs.132497 NR_046817 ENSG00000233602 ERI3-IT1 - ERI3 intronic transcript 1 ncRNA 324-451 chr6 23236177 23236324 + 3 NA Intergenic L1MC2|LINE|L1 -518326 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 1175-5 chr8 137385663 137386455 + 3 NA Intergenic L1MC4|LINE|L1 27529 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 282-449 chr8 82732573 82732771 + 3 NA Intergenic Intergenic -179432 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 291-428 chr8 26958475 26958667 + 3 NA Intergenic L1MD2|LINE|L1 90392 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 871-30 chr5 122846045 122846594 + 3 NA intron (NM_014035, intron 1 of 6) intron (NM_014035, intron 1 of 6) 706 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 301-164 chr17 62081713 62081931 + 3 NA Intergenic AluSp|SINE|Alu -16544 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 455-68 chr13 110791343 110791587 + 3 NA Intergenic L1MCc|LINE|L1 21619 NR_135280 283486 Hs.447504 NR_135280 ENSG00000259831 LINC00567 - long intergenic non-protein coding RNA 567 ncRNA 616-34 chr12 114198978 114199385 + 3 NA Intergenic L1MEd|LINE|L1 42589 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 280-27 chr1 192670365 192670487 + 3 NA Intergenic Intergenic 34279 NM_144766 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 611-72 chr2 38138873 38139244 + 3 NA intron (NR_027252, intron 2 of 2) intron (NR_027252, intron 2 of 2) 7953 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 501-86 chr18 9181966 9182229 + 3 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 44534 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 634-18 chr10 78886668 78887005 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 180612 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 294-60 chr11 60418111 60418292 + 3 NA TTS (NM_001079692) TTS (NM_001079692) -11371 NM_023945 64232 Hs.178066 NM_023945 ENSG00000166930 MS4A5 CD20-L2|CD20L2|TETM4 membrane spanning 4-domains A5 protein-coding 236-366 chr8 124199273 124199426 + 3 NA intron (NR_125420, intron 2 of 2) MER117|DNA|hAT-Charlie -27827 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 513-52 chr11 96976279 96976498 + 3 NA Intergenic Intergenic 467963 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 408-265 chr5 44447683 44447893 + 3 NA Intergenic LTR49-int|LTR|ERV1 -58368 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 514-273 chr7 61929745 61929920 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1374224 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 499-279 chr9 2314835 2315141 + 3 NA Intergenic L1MA2|LINE|L1 156532 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 416-323 chr8 26150916 26151136 + 3 NA Intergenic Intergenic -105613 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 488-202 chr5 26078725 26078966 + 3 NA Intergenic Intergenic 887892 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 546-254 chr9 29392243 29392596 + 3 NA Intergenic L1MA9|LINE|L1 -178818 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1029-15 chr6 137590568 137591275 + 3 NA Intergenic L1PB4|LINE|L1 -74725 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 359-514 chr9 108826924 108827126 + 3 NA Intergenic Intergenic 28961 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 312-131 chr13 105904257 105904402 + 3 NA Intergenic Intergenic 197499 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 491-87 chr17 3334930 3335237 + 3 NA Intergenic L1MC|LINE|L1 24838 NR_024128 390756 Hs.632245 NM_001005334 ENSG00000180068 OR3A4P OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P olfactory receptor family 3 subfamily A member 4 pseudogene pseudo 454-162 chr2 108264576 108264873 + 3 NA intron (NM_001008743, intron 6 of 7) intron (NM_001008743, intron 6 of 7) -24171 NM_001056 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 629-45 chr14 87697574 87698005 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -42495 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 412-77 chr13 48555179 48555417 + 3 NA Intergenic Intergenic -19403 NM_001352429 1102 Hs.652712 NM_001268 ENSG00000136161 RCBTB2 CHC1L|RLG RCC1 and BTB domain containing protein 2 protein-coding 347-390 chr5 42397655 42397822 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -25701 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 447-282 chr8 137790628 137790833 + 3 NA Intergenic Intergenic 292815 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 401-66 chr12 44584412 44584670 + 3 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 291120 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 490-164 chr20 20126085 20126325 + 3 NA intron (NM_015585, intron 8 of 26) L1PB1|LINE|L1 69559 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 259-252 chr3 86038676 86038832 + 3 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -210704 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 505-238 chr5 45935682 45935896 + 3 NA Intergenic ALR/Alpha|Satellite|centr -239409 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 518-75 chr13 97420344 97420529 + 3 NA Intergenic Intergenic -13733 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 336-269 chr2 64581369 64581590 + 3 NA intron (NM_203437, intron 8 of 9) intron (NM_203437, intron 8 of 9) -25833 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 341-355 chr3 175174064 175174310 + 3 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -58945 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 518-131 chr2 60226585 60226942 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 156273 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 347-526 chr8 125129279 125129455 + 3 NA intron (NM_001349486, intron 3 of 7) MIR3|SINE|MIR 37507 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 337-358 chr3 90699802 90699992 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1592276 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 639-20 chr11 17369346 17369819 + 3 NA intron (NM_001202439, intron 4 of 4) intron (NM_001202439, intron 4 of 4) 17782 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 498-183 chr4 155456 155721 + 3 NA intron (NR_110527, intron 3 of 4) THE1B-int|LTR|ERVL-MaLR 27467 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 455-71 chr14 60420795 60421027 + 3 NA Intergenic L1MA8|LINE|L1 65152 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 553-148 chr22 36152422 36152706 + 3 NA intron (NM_030644, intron 1 of 4) intron (NM_030644, intron 1 of 4) 8191 NM_145639 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 409-6 chr1 159967903 159968060 + 3 NA intron (NR_038849, intron 1 of 2) L1MA7|LINE|L1 6757 NR_038849 100505633 Hs.445045 NR_038849 ENSG00000224259 LINC01133 - long intergenic non-protein coding RNA 1133 ncRNA 563-53 chr14 71283345 71283634 + 3 NA Intergenic L3|LINE|CR1 -36987 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 418-156 chr3 62822186 62822439 + 3 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 53104 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 503-306 chr9 96704328 96704563 + 3 NA Intergenic L1MCa|LINE|L1 -21376 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 382-107 chr14 48077280 48077439 + 3 NA Intergenic Intergenic -282345 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 579-41 chr14 78378948 78379253 + 3 NA intron (NR_073547, intron 4 of 20) L1MDa|LINE|L1 -24619 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 561-8 chr1 113485453 113485734 + 3 NA intron (NM_001142782, intron 1 of 20) L1PB1|LINE|L1 95078 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 1805 chr3 56013697 56014534 + 3 NA intron (NR_132749, intron 8 of 17) intron (NR_132749, intron 8 of 17) -161521 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 813-29 chr4 31306307 31306745 + 3 NA Intergenic L2c|LINE|L2 135382 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 470-15 chr1 213809900 213810172 + 3 NA Intergenic Intergenic -114713 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 494-165 chr3 23678871 23679164 + 3 NA Intergenic Intergenic -126938 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 223-308 chr6 141596830 141596932 + 3 NA Intergenic Intergenic 491918 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 352-446 chr6 40020065 40020253 + 3 NA Intergenic MIRb|SINE|MIR -85697 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 413-68 chr12 46805116 46805275 + 3 NA intron (NM_018018, intron 1 of 16) intron (NM_018018, intron 1 of 16) 20802 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 600-58 chr2 17468987 17469310 + 3 NA Intergenic L1MA8|LINE|L1 49292 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 586-74 chr2 81666437 81666794 + 3 NA Intergenic Intergenic -199669 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 638-53 chr16 77339788 77340144 + 3 NA intron (NM_199355, intron 11 of 22) intron (NM_199355, intron 11 of 22) 95068 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 278-448 chr9 27364823 27364982 + 3 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -67752 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 587-155 chr7 94577000 94577352 + 3 NA Intergenic L1M4|LINE|L1 67367 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 436-171 chr21 45238848 45239001 + 3 NA intron (NR_135279, intron 1 of 2) L1M1|LINE|L1 4584 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 368-58 chr10 66553097 66553240 + 3 NA intron (NM_001127384, intron 10 of 17) L1MEg|LINE|L1 -372868 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 361-484 chr9 106841373 106841508 + 3 NA Intergenic Intergenic -21726 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 351-132 chr14 68742395 68742575 + 3 NA Intergenic Intergenic 51429 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 299-490 chr9 113023202 113023324 + 3 NA Intergenic L1M4b|LINE|L1 -11071 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 486-258 chr6 54142472 54142727 + 3 NA intron (NM_001281746, intron 4 of 11) L2a|LINE|L2 31156 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 408-61 chr11 29013742 29014010 + 3 NA Intergenic Intergenic -536328 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 367-141 chr15 101834586 101834859 + 3 NA Intergenic L1M3|LINE|L1 -7397 NR_046417 390651 Hs.578689 NR_046417 ENSG00000214344 OR4F13P GPCRLTM7 olfactory receptor family 4 subfamily F member 13 pseudogene pseudo 752-59 chr5 24912368 24912917 + 3 NA Intergenic L1MDa|LINE|L1 -72059 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 1076-4 chr10 66450377 66451014 + 3 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -475341 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 425-266 chr6 134195091 134195323 + 3 NA intron (NM_001143676, intron 3 of 13) intron (NM_001143676, intron 3 of 13) -17346 NM_001143677 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 1257-5 chr3 41470915 41471611 + 3 NA intron (NR_136342, intron 30 of 34) L1MA7|LINE|L1 271758 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 550-104 chr2 6844852 6845161 + 3 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -4542 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 867-30 chr3 124210498 124210866 + 3 NA intron (NM_001024660, intron 1 of 59) MIRc|SINE|MIR 77753 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 271-282 chr3 163690632 163690768 + 3 NA Intergenic L1M5|LINE|L1 -387399 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 337-331 chr3 157109 157277 + 3 NA Intergenic Intergenic -39403 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 938-16 chr2 220229898 220230247 + 3 NA Intergenic Intergenic -323507 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 482-272 chr8 105533017 105533290 + 3 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 213610 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 724-26 chr18 2342722 2343026 + 3 NA Intergenic L1M4|LINE|L1 228631 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 506-274 chr8 34716055 34716394 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -67697 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 219-176 chr2 107453611 107453692 + 3 NA Intergenic Intergenic -75768 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 461-292 chr9 80765302 80765610 + 3 NA Intergenic Intergenic 790433 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1290-5 chr5 72501847 72502696 + 3 NA intron (NM_152625, intron 1 of 4) intron (NM_152625, intron 1 of 4) 5139 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 812-34 chr22 35665159 35665623 + 3 NA 3' UTR (NM_030641, exon 3 of 3) 3' UTR (NM_030641, exon 3 of 3) 16945 NM_030641 80830 Hs.257352 NM_030641 ENSG00000221963 APOL6 APOL-VI|APOLVI apolipoprotein L6 protein-coding 603-123 chr4 71653453 71653754 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner 130476 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 608-56 chr18 1452790 1453122 + 3 NA Intergenic L1MA2|LINE|L1 -93327 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 224-101 chr15 63796161 63796253 + 3 NA intron (NM_003922, intron 1 of 77) intron (NM_003922, intron 1 of 77) 37741 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 687-32 chr12 118588389 118588833 + 3 NA Intergenic AluSx3|SINE|Alu 173068 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 250-294 chr3 174833341 174833512 + 3 NA Intergenic L1M5|LINE|L1 -25908 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 371-143 chr17 51614971 51615272 + 3 NA Intergenic Intergenic 179694 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 343-557 chr8 125005742 125005888 + 3 NA intron (NM_003129, intron 3 of 10) intron (NM_003129, intron 3 of 10) 7310 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 668-104 chr8 65028737 65029085 + 3 NA Intergenic L1M4|LINE|L1 151429 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 486-116 chr17 70611068 70611304 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 441651 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 618-62 chr2 98353427 98353772 + 3 NA intron (NM_001079878, intron 1 of 6) MER2|DNA|TcMar-Tigger 7143 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 802-65 chr7 80042865 80043252 + 3 NA Intergenic Intergenic -91773 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 176-149 chr8 140856365 140856441 + 3 NA intron (NR_148037, intron 6 of 34) L1ME2z|LINE|L1 -123750 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 736-75 chr6 62102823 62103246 + 3 NA intron (NR_146874, intron 2 of 13) LTR2752|LTR|ERV1 183191 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 293-405 chr7 52068443 52068601 + 3 NA Intergenic L1ME3B|LINE|L1 -675266 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 700-85 chr5 153785594 153786151 + 3 NA intron (NR_047578, intron 12 of 13) L3|LINE|CR1 113115 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 434-156 chr2 139057385 139057583 + 3 NA Intergenic Intergenic 160160 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 765-4 chr10 29237669 29238031 + 3 NA Intergenic Intergenic -51220 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 325-202 chr16 71434115 71434314 + 3 NA intron (NM_001367365, intron 1 of 9) MIRb|SINE|MIR -7750 NR_146574 105371333 Hs.578738 NR_146574 ENSG00000261348 LINC02136 - long intergenic non-protein coding RNA 2136 ncRNA 269-17 chr1 158293910 158294077 + 3 NA 3' UTR (NM_001765, exon 6 of 6) 3' UTR (NM_001765, exon 6 of 6) 4070 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 598-69 chr2 12650054 12650335 + 3 NA Intergenic Intergenic -66678 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 275-162 chr18 47668936 47669075 + 3 NA Intergenic Intergenic 261654 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 417-20 chr1 224832756 224833009 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -96772 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 541-24 chr10 117595467 117595681 + 3 NA Intergenic LTR33|LTR|ERVL -50506 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 715-5 chr10 80758608 80759031 + 3 NA Intergenic L1M4|LINE|L1 109022 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 657-66 chr3 145630256 145630713 + 3 NA Intergenic L1M4|LINE|L1 438701 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 428-60 chr13 94225607 94225796 + 3 NA intron (NM_005708, intron 4 of 8) Tigger17a|DNA|TcMar-Tigger -37710 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 919-27 chr9 28630872 28631230 + 3 NA intron (NM_152570, intron 2 of 6) L1MD2|LINE|L1 88254 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 630-140 chr8 118204786 118205114 + 3 NA intron (NM_001101676, intron 4 of 4) MLT2B4|LTR|ERVL -93131 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 581-72 chr2 10841539 10841798 + 3 NA Intergenic LTR41C|LTR|ERVL -3956 NM_001282705 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 386-85 chr13 86405827 86406080 + 3 NA Intergenic Intergenic -505967 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 513-83 chr15 27326073 27326300 + 3 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -164867 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 620-13 chr10 41876546 41876868 + 3 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 491338 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 455-147 chr20 39569925 39570245 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -345337 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 633-77 chr3 10744834 10745187 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 19199 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 419-121 chr18 14043901 14044092 + 3 NA Intergenic MER110-int|LTR|ERV1 88439 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 499-76 chr15 86543942 86544270 + 3 NA intron (NM_152336, intron 19 of 24) MLT1H|LTR|ERVL-MaLR -227138 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 486-260 chr6 87172212 87172413 + 3 NA intron (NM_015021, intron 1 of 7) intron (NM_015021, intron 1 of 7) 16747 NM_015021 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 364-268 chr3 10698245 10698461 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 65856 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 633-108 chr6 163750937 163751308 + 3 NA Intergenic Intergenic -79638 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 1089-9 chr3 144692782 144693173 + 3 NA Intergenic Intergenic 719896 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 654-21 chr10 98759888 98760367 + 3 NA intron (NM_021828, intron 3 of 11) L1M3|LINE|L1 164441 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 824-26 chr2 236224521 236224985 + 3 NA intron (NM_212556, intron 3 of 5) MIRb|SINE|MIR 39592 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 455-81 chr15 63557539 63557731 + 3 NA intron (NM_001256702, intron 4 of 13) intron (NM_001256702, intron 4 of 13) -39752 NM_001367808 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 422-237 chr5 27108907 27109095 + 3 NA Intergenic Intergenic -70415 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 307-257 chr2 177808242 177808410 + 3 NA intron (NM_001077197, intron 10 of 20) intron (NM_001077197, intron 10 of 20) 80430 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 513-74 chr14 59899464 59899776 + 3 NA Intergenic Intergenic -20093 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 1162-6 chr2 126622003 126622789 + 3 NA Intergenic Intergenic -33539 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 265-319 chr5 125493467 125493653 + 3 NA intron (NR_109887, intron 1 of 3) ERV3-16A3_I-int|LTR|ERVL 299 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 610-146 chr6 62361536 62361871 + 3 NA Intergenic Tigger19a|DNA|TcMar-Tigger -75476 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 659-108 chr7 66641469 66641747 + 3 NA 3' UTR (NM_153033, exon 4 of 4) 3' UTR (NM_153033, exon 4 of 4) 12727 NM_153033 154881 Hs.546627 NM_153033 ENSG00000243335 KCTD7 CLN14|EPM3 potassium channel tetramerization domain containing 7 protein-coding 622-105 chr5 42353163 42353398 + 3 NA Intergenic L1PA6|LINE|L1 -70159 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 536-124 chr2 103079773 103080004 + 3 NA Intergenic L1MA5A|LINE|L1 -95459 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 472-203 chr3 19560846 19561136 + 3 NA Intergenic L1ME1|LINE|L1 -246060 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 868-28 chr4 157641170 157641680 + 3 NA Intergenic Intergenic 68935 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 475-35 chr11 21345197 21345407 + 3 NA intron (NM_201551, intron 14 of 18) MIR3|SINE|MIR 675716 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 639-103 chr6 54620553 54620828 + 3 NA Intergenic Intergenic -226081 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 305-193 chr17 33434739 33434918 + 3 NA intron (NM_001094, intron 1 of 9) HAL1M8|LINE|L1 98932 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 418-3 chr1 74102596 74102808 + 3 NA intron (NM_001105659, intron 5 of 7) intron (NM_001105659, intron 5 of 7) 95474 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 548-7 chr1 106469316 106469605 + 3 NA Intergenic L1M2|LINE|L1 -348779 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 505-89 chr14 81056628 81056803 + 3 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 101094 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 299-444 chr8 55412892 55413016 + 3 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 42367 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 395-249 chr4 59609207 59609368 + 3 NA Intergenic Intergenic 595714 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1258-4 chr2 75126774 75127393 + 3 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 36271 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 877-29 chr5 141231621 141232161 + 3 NA Intergenic L1MEd|LINE|L1 -2442 NR_001281 54660 Hs.676071 NR_001281 ENSG00000146001 PCDHB18P PCDH-psi2|PCDHB18 protocadherin beta 18 pseudogene pseudo 511-220 chr6 39463865 39464159 + 3 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -32622 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 601-21 chr11 39028362 39028605 + 3 NA Intergenic Intergenic 379625 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 502-228 chr5 131782033 131782229 + 3 NA intron (NM_133372, intron 1 of 17) AluJr|SINE|Alu 14886 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 430-135 chr19 36651386 36651614 + 3 NA intron (NM_001322821, intron 4 of 5) L1MD2|LINE|L1 15337 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 527-143 chr2 158070019 158070224 + 3 NA intron (NM_001135098, intron 2 of 8) LTR41|LTR|ERVL -31749 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 383-24 chr1 228672644 228672812 + 3 NA intron (NR_037962, intron 1 of 2) intron (NR_037962, intron 1 of 2) -26570 NR_023372 100169761 NR_023372 ENSG00000199910 RNA5S10 RN5S10 RNA, 5S ribosomal 10 rRNA 616-61 chr17 56080279 56080599 + 3 NA Intergenic L1ME3G|LINE|L1 -73036 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 600-5 chr1 115541773 115542134 + 3 NA Intergenic Intergenic -100017 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 222-180 chr2 103116569 103116709 + 3 NA Intergenic Intergenic -132210 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 414-352 chr9 74192420 74192640 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -179001 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 417-229 chr5 158867843 158868013 + 3 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 230028 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 758-48 chr2 220292212 220292550 + 3 NA Intergenic L1M7|LINE|L1 -385816 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 489-261 chr8 137806539 137806707 + 3 NA Intergenic Intergenic 276922 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 337-246 chr2 39232446 39232646 + 3 NA intron (NR_144521, intron 1 of 10) intron (NR_144521, intron 1 of 10) -2958 NM_001346911 344387 Hs.403201 NM_001009565 ENSG00000205111 CDKL4 - cyclin dependent kinase like 4 protein-coding 1004-15 chr5 109554836 109555349 + 3 NA Intergenic L1ME3A|LINE|L1 -134274 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 772-46 chr6 64295939 64296443 + 3 NA intron (NM_001292009, intron 30 of 43) Charlie1a|DNA|hAT-Charlie 489355 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 559-112 chr21 31483448 31483757 + 3 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 75485 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 769-7 chr10 52418808 52419085 + 3 NA Intergenic Intergenic 36326 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 368-36 chr1 245299934 245300106 + 3 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) -65503 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 531-204 chr5 159624459 159624809 + 3 NA Intergenic MER51B|LTR|ERV1 -158358 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 937-25 chr4 124982451 124983017 + 3 NA Intergenic L2c|LINE|L2 -270002 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 540-92 chr16 60728727 60729031 + 3 NA Intergenic Intergenic 326887 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 494-68 chr14 70606373 70606654 + 3 NA Intergenic L2c|LINE|L2 -5823 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 467-294 chr9 26241623 26241867 + 3 NA Intergenic Intergenic 175070 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 413-196 chr3 127891733 127891990 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 -23371 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 468-301 chr7 56441505 56441702 + 3 NA intron (NR_029420, intron 1 of 5) L1MA3|LINE|L1 6772 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 366-192 chr2 31573347 31573601 + 3 NA intron (NM_000348, intron 1 of 4) intron (NM_000348, intron 1 of 4) 7464 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 622-28 chr14 62500079 62500436 + 3 NA Intergenic Intergenic -360284 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 651-66 chr2 133693599 133693937 + 3 NA Intergenic L1MEg|LINE|L1 -125305 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 419-100 chr15 46074384 46074572 + 3 NA Intergenic L1MA8|LINE|L1 369283 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 531-7 chr1 113444673 113444907 + 3 NA intron (NM_001142782, intron 1 of 20) L1M4c|LINE|L1 54275 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 659-48 chr19 36636679 36636922 + 3 NA 3' UTR (NM_001322826, exon 5 of 5) 3' UTR (NM_001322826, exon 5 of 5) 30037 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 547-220 chr7 53240629 53241000 + 3 NA Intergenic L1MD3|LINE|L1 205181 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 740-75 chr8 64148999 64149396 + 3 NA intron (NR_125826, intron 3 of 4) intron (NR_125826, intron 3 of 4) 219361 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 417-85 chr14 61349092 61349303 + 3 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 27754 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 313-190 chr16 76865322 76865494 + 3 NA Intergenic Intergenic -3528 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 568-87 chr18 43168500 43168768 + 3 NA Intergenic MER61-int|LTR|ERV1 -52942 NM_001272077 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 511-198 chr4 175174184 175174417 + 3 NA Intergenic Intergenic 255942 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 548-211 chr7 63107572 63107857 + 3 NA Intergenic Intergenic 196342 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 652-108 chr7 47232680 47232941 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 231993 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 627-60 chr2 128416535 128416839 + 3 NA Intergenic Intergenic -97819 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 561-156 chr5 29303695 29303933 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 92162 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 570-207 chr9 26812246 26812452 + 3 NA Intergenic L1PA17|LINE|L1 80453 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 1003-4 chr10 130282000 130282455 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR 145818 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 377-243 chr20 15545623 15545823 + 3 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 348883 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 416-54 chr10 99481674 99481903 + 3 NA Intergenic L1MEc|LINE|L1 49389 NR_120618 101927324 Hs.642588 NR_120618 ENSG00000257582 LINC01475 - long intergenic non-protein coding RNA 1475 ncRNA 443-67 chr12 48483662 48483897 + 3 NA intron (NM_152319, intron 2 of 8) intron (NM_152319, intron 2 of 8) 1281 NM_152319 121273 Hs.98202 NM_152319 ENSG00000177627 C12orf54 HSD-29|HSD-30 chromosome 12 open reading frame 54 protein-coding 268-10 chr1 96635808 96635916 + 3 NA Intergenic Intergenic -85743 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 372-267 chr2 189982327 189982561 + 3 NA Intergenic L1PA17|LINE|L1 80285 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 407-160 chr2 210837347 210837557 + 3 NA Intergenic Intergenic 219881 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 450-179 chr21 34300787 34301100 + 3 NA Intergenic Intergenic -63081 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 414-303 chr7 39106430 39106604 + 3 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -92950 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 775-75 chr6 57328611 57328931 + 3 NA intron (NM_000947, intron 5 of 13) L1MB5|LINE|L1 11141 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 823-22 chr3 48364867 48365390 + 3 NA Intergenic L1MD2|LINE|L1 -7091 NM_207102 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 380-415 chr8 140144130 140144364 + 3 NA intron (NM_001160372, intron 17 of 22) L1M5|LINE|L1 -43712 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 605-55 chr2 168972210 168972582 + 3 NA intron (NM_003742, intron 13 of 27) intron (NM_003742, intron 13 of 27) 58928 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 173-111 chr5 77763948 77764061 + 3 NA intron (NM_004607, intron 1 of 3) L1ME3F|LINE|L1 12335 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 521-89 chr15 63203212 63203411 + 3 NA intron (NM_016530, intron 1 of 7) MIRb|SINE|MIR 13705 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 402-29 chr10 20896508 20896693 + 3 NA intron (NM_006393, intron 2 of 27) intron (NM_006393, intron 2 of 27) 1002 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 669-40 chr17 65568809 65569219 + 3 NA Intergenic Intergenic -7366 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 466-95 chr16 58999962 59000174 + 3 NA Intergenic Intergenic -265752 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 341-19 chr1 73838581 73838810 + 3 NA Intergenic L1MA9|LINE|L1 164016 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 492-170 chr3 7868109 7868315 + 3 NA Intergenic AluSq2|SINE|Alu 148095 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 728-45 chr2 52563664 52564068 + 3 NA Intergenic Intergenic 138749 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 762-81 chrX 65109416 65109822 + 3 NA Intergenic L1MB8|LINE|L1 -74878 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 484-214 chr5 64550902 64551112 + 3 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) -24643 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 776-17 chr14 84072181 84072592 + 3 NA Intergenic Intergenic -1199546 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 336-87 chr11 28514493 28514632 + 3 NA Intergenic Intergenic -37014 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 513-132 chr2 94501868 94502064 + 3 NA Intergenic ALR/Alpha|Satellite|centr 85217 NR_024443 100133920 Hs.645503 NR_024443 ENSG00000261522 LOC100133920 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene pseudo 401-231 chr4 73550049 73550284 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 41363 NR_046377 728040 Hs.640574 NR_046377 ENSG00000250436 LINC02499 - long intergenic non-protein coding RNA 2499 ncRNA 635-58 chr2 170181888 170182233 + 3 NA intron (NM_001083615, intron 1 of 33) intron (NM_001083615, intron 1 of 33) 3913 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 517-136 chr2 122541484 122541822 + 3 NA Intergenic Intergenic 531828 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 479-26 chr10 66176413 66176660 + 3 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 605111 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 950-12 chr19 32114566 32115036 + 3 NA Intergenic L1MC4|LINE|L1 -8885 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 440-14 chr1 209196608 209196877 + 3 NA Intergenic Intergenic -128714 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 651-54 chr18 78126460 78126723 + 3 NA Intergenic CpG -132864 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 813-8 chr12 23461684 23462056 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 122716 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 636-64 chr19 24362123 24362397 + 3 NA Intergenic ALR/Alpha|Satellite|centr -198813 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 784-46 chr4 52553771 52554061 + 3 NA Intergenic Intergenic 102623 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 424-290 chr9 32805455 32805737 + 3 NA Intergenic L1MC1|LINE|L1 22056 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 703-41 chr2 29909895 29910287 + 3 NA intron (NM_004304, intron 1 of 28) L1MEc|LINE|L1 11495 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 341-121 chr12 60098641 60098849 + 3 NA Intergenic Intergenic 409375 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 1041-11 chr8 129526358 129526972 + 3 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -42523 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 786-66 chr8 119625721 119626277 + 3 NA intron (NM_001330600, intron 3 of 25) MamRTE1|LINE|RTE-BovB 12840 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 320-570 chr8 122417516 122417669 + 3 NA intron (NR_131202, intron 2 of 3) MLT1G3-int|LTR|ERVL-MaLR 151052 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 403-209 chr4 8715866 8716044 + 3 NA Intergenic L1MEc|LINE|L1 123190 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 474-260 chr7 16113765 16113965 + 3 NA intron (NM_001101426, intron 9 of 9) L1MEd|LINE|L1 -96621 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 149-24 chr12 79079577 79079653 + 3 NA intron (NM_005639, intron 3 of 10) intron (NM_005639, intron 3 of 10) 33923 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 685-29 chr15 95008237 95008483 + 3 NA Intergenic Intergenic 152997 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 308-166 chr15 99586805 99586947 + 3 NA intron (NM_001352616, intron 1 of 10) L1ME2|LINE|L1 20393 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 722-62 chr5 52368529 52368958 + 3 NA Intergenic LTR33A|LTR|ERVL 360712 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 440-175 chr4 18429072 18429298 + 3 NA Intergenic MIRc|SINE|MIR -407310 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 723-17 chr12 37916560 37917031 + 3 NA Intergenic ALR/Alpha|Satellite|centr -399979 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 451-217 chr7 53012900 53013207 + 3 NA Intergenic Intergenic -22580 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 933-10 chr13 76121511 76122089 + 3 NA Intergenic L1PA16|LINE|L1 -186668 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 429-22 chr1 190520840 190521074 + 3 NA Intergenic LTR16D1|LTR|ERVL 42406 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 412-295 chr6 169413463 169413666 + 3 NA Intergenic Intergenic -159450 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 431-278 chr7 126995469 126995759 + 3 NA intron (NM_001371085, intron 3 of 10) L1MB3|LINE|L1 62570 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 629-141 chr9 79325973 79326328 + 3 NA Intergenic Intergenic -180484 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 288-14 chr1 87228928 87229117 + 3 NA intron (NM_001290053, intron 2 of 3) MIRc|SINE|MIR 16353 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 368-335 chr4 71878256 71878474 + 3 NA Intergenic Intergenic -72845 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 477-59 chr11 63661076 63661410 + 3 NA intron (NM_001290048, intron 1 of 12) AluSz|SINE|Alu 10133 NM_015459 25923 Hs.356719 NM_015459 ENSG00000184743 ATL3 HSN1F atlastin GTPase 3 protein-coding 444-121 chr2 118601125 118601427 + 3 NA intron (NR_110272, intron 2 of 2) MER21-int|LTR|ERVL 1690 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 693-33 chr14 87910550 87910921 + 3 NA Intergenic L1PA13|LINE|L1 82447 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 275-128 chr16 52390126 52390274 + 3 NA Intergenic L1MA6|LINE|L1 131636 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 328-85 chr11 61942787 61942978 + 3 NA Intergenic L1M4|LINE|L1 -6939 NM_001363592 7439 Hs.524910 NM_004183 ENSG00000167995 BEST1 ARB|BEST|BMD|Best1V1Delta2|RP50|TU15B|VMD2 bestrophin 1 protein-coding 239-304 chr5 27412031 27412202 + 3 NA Intergenic Intergenic -60176 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 262-44 chr10 43592121 43592322 + 3 NA Intergenic HERV3-int|LTR|ERV1 -14186 NM_001318142 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 680-55 chr2 79261929 79262334 + 3 NA Intergenic Intergenic -102378 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 146-64 chr4 111551214 111551275 + 3 NA Intergenic Intergenic -594210 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 485-139 chr2 104806025 104806306 + 3 NA non-coding (NR_037883, exon 4 of 4) non-coding (NR_037883, exon 4 of 4) 45311 NR_131235 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 811-43 chr6 62676448 62676755 + 3 NA Intergenic Intergenic -390374 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 580-44 chr13 79628119 79628424 + 3 NA Intergenic AluY|SINE|Alu 61544 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 339-236 chr19 53192039 53192269 + 3 NA intron (NM_001353458, intron 1 of 4) intron (NM_001353458, intron 1 of 4) 1204 NM_001353458 79788 Hs.745230 NM_024733 ENSG00000197497 ZNF665 ZFP160L zinc finger protein 665 protein-coding 258-49 chr10 44750031 44750188 + 3 NA Intergenic L1MCa|LINE|L1 -161207 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 945-3 chr1 170769232 170769779 + 3 NA Intergenic Intergenic 105374 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 688-96 chr6 73951589 73952057 + 3 NA Intergenic Intergenic -117628 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 462-289 chr8 135131383 135131637 + 3 NA Intergenic Intergenic -102621 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 452-121 chr2 31451032 31451254 + 3 NA Intergenic L1M1|LINE|L1 -36401 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 459-239 chr5 96953319 96953515 + 3 NA intron (NM_005575, intron 1 of 17) intron (NM_005575, intron 1 of 17) -5016 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 559-57 chr15 86643168 86643510 + 3 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -289541 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 623-53 chr2 14828581 14828990 + 3 NA Intergenic L2a|LINE|L2 196068 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 602-105 chr5 55129283 55129553 + 3 NA intron (NM_001145734, intron 6 of 10) L1MEf|LINE|L1 26772 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 430-100 chr15 89098365 89098510 + 3 NA intron (NM_007011, intron 2 of 14) intron (NM_007011, intron 2 of 14) 9981 NM_007011 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 348-561 chr9 112957374 112957575 + 3 NA Intergenic Intergenic 54718 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 717-8 chr1 79151701 79152127 + 3 NA Intergenic Intergenic -145184 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 461-287 chr9 27919666 27919901 + 3 NA Intergenic L1MEc|LINE|L1 -345917 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 498-120 chr2 44642139 44642382 + 3 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 280313 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 595-117 chr4 17698740 17698991 + 3 NA intron (NM_015688, intron 5 of 17) L1MEc|LINE|L1 82756 NM_015688 27146 Hs.744951 NM_015688 ENSG00000047662 FAM184B - family with sequence similarity 184 member B protein-coding 562-232 chrX 66510485 66510838 + 3 NA Intergenic L1PA15|LINE|L1 105369 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 657-74 chr5 7441443 7441748 + 3 NA intron (NM_020546, intron 2 of 24) MER63B|DNA|hAT-Blackjack 45457 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 390-358 chr7 73940181 73940334 + 3 NA Intergenic L1M4|LINE|L1 79098 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 550-115 chr2 99232634 99232946 + 3 NA Intergenic L1PA15-16|LINE|L1 22317 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 344-443 chr6 161903086 161903287 + 3 NA intron (NM_004562, intron 6 of 11) MER63A|DNA|hAT-Blackjack 432209 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 254-376 chr7 32391510 32391631 + 3 NA intron (NM_001322059, intron 1 of 17) L1MC4a|LINE|L1 36654 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 336-315 chr20 9187646 9187821 + 3 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -29657 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 462-218 chr4 165603857 165604217 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -80602 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 356-334 chr3 144423228 144423483 + 3 NA Intergenic Intergenic 450274 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 685-76 chr5 94246995 94247341 + 3 NA intron (NM_001145678, intron 20 of 20) MamTip2|DNA|hAT-Tip100 -135469 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 502-106 chr16 78067038 78067245 + 3 NA Intergenic Intergenic -32513 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 533-32 chr12 10014082 10014306 + 3 NA intron (NM_001319241, intron 2 of 5) intron (NM_001319241, intron 2 of 5) 3567 NM_001129998 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 587-179 chrX 82234640 82234942 + 3 NA Intergenic L1PREC2|LINE|L1 1032689 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 633-60 chr2 29965115 29965556 + 3 NA Intergenic Intergenic -43749 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 417-22 chr1 235003166 235003371 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -39269 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 453-160 chr3 58559375 58559535 + 3 NA Intergenic AluJo|SINE|Alu 17936 NM_007177 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 685-80 chr6 53215403 53215794 + 3 NA Intergenic Intergenic -61395 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 327-82 chr11 32008077 32008264 + 3 NA Intergenic L1ME4a|LINE|L1 33148 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 613-4 chr1 36776756 36777140 + 3 NA Intergenic Intergenic 257567 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 443-64 chr12 33319847 33320068 + 3 NA Intergenic LTR16A1|LTR|ERVL 119862 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 979-20 chr8 46071589 46072057 + 3 NA Intergenic ALR/Alpha|Satellite|centr 545820 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 587-103 chr3 63048510 63048904 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -53981 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 450-161 chr2 229074673 229074944 + 3 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 157284 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 764-50 chr3 190290347 190290818 + 3 NA Intergenic Intergenic 31864 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 1159-5 chr18 80091333 80091949 + 3 NA Intergenic L1MD3|LINE|L1 -17621 NM_014913 22850 Hs.131915 NM_014913 ENSG00000101544 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 467-134 chr2 75616678 75616899 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -29995 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 462-119 chr18 66073329 66073589 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 322447 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 687-76 chr3 74567347 74567795 + 3 NA Intergenic Intergenic -46431 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 361-451 chr8 98808073 98808319 + 3 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) 17475 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 891-23 chr3 44679869 44680488 + 3 NA intron (NR_157564, intron 1 of 2) Tigger3|DNA|TcMar-Tigger 5475 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 490-178 chr3 19832254 19832485 + 3 NA Intergenic L1MA4|LINE|L1 101848 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 303-440 chr8 13253663 13253818 + 3 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) 22781 NM_001316668 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 742-18 chr11 94627667 94628079 + 3 NA intron (NR_135096, intron 4 of 6) intron (NR_135096, intron 4 of 6) 60505 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 589-4 chr1 90619188 90619464 + 3 NA Intergenic HSMAR1|DNA|TcMar-Mariner -38424 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 453-25 chr10 53546740 53546961 + 3 NA Intergenic MER4D|LTR|ERV1 -775150 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 437-112 chr19 10043014 10043197 + 3 NA intron (NR_027300, intron 4 of 29) intron (NR_027300, intron 4 of 29) 1749 NR_027300 388503 Hs.655363 NM_001013640 ENSG00000167798 C3P1 CPLP complement component 3 precursor pseudogene pseudo 399-28 chr10 22642725 22642940 + 3 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 71276 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 555-22 chr10 75669059 75669430 + 3 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 21735 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 746-46 chr20 55135558 55135988 + 3 NA Intergenic Intergenic -287270 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 782-59 chr6 160651718 160652105 + 3 NA intron (NM_005577, intron 1 of 38) L1MCc|LINE|L1 12348 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 419-186 chr3 81886289 81886456 + 3 NA Intergenic Intergenic -99770 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 527-14 chr1 234145689 234145881 + 3 NA intron (NM_173508, intron 2 of 7) MER2|DNA|TcMar-Tigger -68426 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 670-42 chr15 75990155 75990504 + 3 NA intron (NM_138573, intron 3 of 5) L1MEc|LINE|L1 22095 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 1241-3 chr19 24370975 24371561 + 3 NA Intergenic ALR/Alpha|Satellite|centr -207821 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 648-120 chr5 153085787 153086230 + 3 NA Intergenic Intergenic -113659 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 379-319 chr7 89319736 89319983 + 3 NA intron (NM_181646, intron 2 of 3) L1MEg|LINE|L1 -524122 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 665-107 chr8 102192680 102193034 + 3 NA Intergenic Intergenic 45974 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 964-14 chr2 59346534 59347207 + 3 NA Intergenic Intergenic 129162 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 710-96 chr8 135008047 135008445 + 3 NA Intergenic Intergenic 158311 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 641-50 chr18 5802807 5803179 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -37702 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 307-139 chr14 53156456 53156594 + 3 NA non-coding (NR_110062, exon 2 of 3) non-coding (NR_110062, exon 2 of 3) 3171 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 459-113 chr18 5117536 5117786 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 36479 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 400-74 chr12 98407970 98408213 + 3 NA Intergenic Intergenic 49054 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 717-20 chr11 30449834 30450158 + 3 NA intron (NM_001584, intron 3 of 5) MER34A|LTR|ERV1 126892 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 872-3 chr1 105647473 105647998 + 3 NA Intergenic L1MA1|LINE|L1 -28800 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 584-146 chr6 54776618 54776843 + 3 NA Intergenic AluSx1|SINE|Alu -70041 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 725-6 chr1 199752705 199753163 + 3 NA Intergenic Intergenic -274776 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 491-156 chr22 25853377 25853582 + 3 NA intron (NM_001318245, intron 21 of 43) intron (NM_001318245, intron 21 of 43) 111291 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 488-127 chr2 18165846 18166012 + 3 NA Intergenic L1PA7|LINE|L1 287262 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 416-71 chr11 60662893 60663134 + 3 NA intron (NR_026946, intron 6 of 6) L2a|LINE|L2 -36599 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 971-12 chr2 22861122 22861735 + 3 NA Intergenic L1MA3|LINE|L1 324949 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 463-35 chr10 37729986 37730181 + 3 NA Intergenic Intergenic 65092 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 390-184 chr2 66962519 66962698 + 3 NA intron (NR_110169, intron 4 of 4) intron (NR_110169, intron 4 of 4) -40118 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 1073-3 chr10 28217970 28218575 + 3 NA intron (NR_134517, intron 2 of 16) intron (NR_134517, intron 2 of 16) 63851 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 413-87 chr14 75373071 75373317 + 3 NA Intergenic L2b|LINE|L2 -54530 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 440-213 chr6 39576671 39576860 + 3 NA intron (NM_001289020, intron 10 of 21) LTR33A|LTR|ERVL -145375 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 626-16 chr10 56737880 56738263 + 3 NA Intergenic Intergenic -376798 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 1507-2 chr3 42975687 42976584 + 3 NA Intergenic Intergenic -3176 NM_001129908 729085 Hs.729533 NM_001129908 ENSG00000144649 GASK1A C3orf41|FAM198A golgi associated kinase 1A protein-coding 518-217 chr4 137717277 137717565 + 3 NA Intergenic Intergenic 171690 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 374-56 chr11 97605448 97605689 + 3 NA Intergenic L2a|LINE|L2 1097143 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 760-5 chr1 116303839 116304347 + 3 NA Intergenic L1MB7|LINE|L1 -69151 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 544-168 chr4 137458984 137459350 + 3 NA Intergenic Intergenic 73327 NM_001300828 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 782-65 chr7 130478022 130478441 + 3 NA Intergenic L1M5|LINE|L1 -7944 NM_177524 4232 Hs.270978 NM_002402 ENSG00000106484 MEST PEG1 mesoderm specific transcript protein-coding 554-33 chr10 76804533 76804837 + 3 NA Intergenic Intergenic -83359 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 279-141 chr17 63107854 63108056 + 3 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 141720 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 557-111 chr2 145088582 145088780 + 3 NA Intergenic Intergenic 420714 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 423-74 chr14 25999647 25999838 + 3 NA Intergenic L1MCa|LINE|L1 553688 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 549-36 chr11 41759902 41760313 + 3 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 45539 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 625-83 chr5 46113230 46113576 + 3 NA Intergenic Intergenic -417023 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 678-23 chr12 120044361 120044622 + 3 NA intron (NR_147894, intron 3 of 8) intron (NR_147894, intron 3 of 8) 54647 NR_147892 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 396-266 chr5 4601052 4601292 + 3 NA Intergenic Intergenic -172309 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 375-213 chr2 103456733 103456926 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -472400 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 489-194 chr4 72614696 72615088 + 3 NA Intergenic L1MEd|LINE|L1 -45671 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 395-16 chr1 172379877 172380042 + 3 NA intron (NR_146559, intron 18 of 20) intron (NR_146559, intron 18 of 20) -40726 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 474-180 chr3 44188204 44188408 + 3 NA Intergenic Intergenic -53580 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 374-168 chr2 4396569 4396724 + 3 NA Intergenic L1MEf|LINE|L1 259576 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 515-139 chr2 237046364 237046592 + 3 NA Intergenic Intergenic 9689 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 256-425 chr8 92569063 92569152 + 3 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 86387 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 405-200 chr3 59697249 59697463 + 3 NA Intergenic Intergenic -38859 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 513-103 chr17 70844433 70844755 + 3 NA Intergenic L1MEf|LINE|L1 357585 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 430-326 chr8 139076821 139077006 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -162872 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 569-43 chr11 109298354 109298727 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -123650 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 498-212 chr5 44469355 44469663 + 3 NA Intergenic L1M4a1|LINE|L1 40773 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 903-15 chr15 56369863 56370272 + 3 NA intron (NM_001286449, intron 2 of 12) L1MEd|LINE|L1 4643 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 550-94 chr18 10830108 10830419 + 3 NA intron (NM_022068, intron 7 of 51) L1M1|LINE|L1 -70614 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 551-186 chr7 21523335 21523559 + 3 NA Intergenic Kanga1d|DNA|TcMar-Tc2 -19592 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 509-158 chr3 166699410 166699609 + 3 NA Intergenic Intergenic -199174 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 592-178 chr8 128270657 128271039 + 3 NA Intergenic Intergenic 120732 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 460-276 chr7 92977711 92977872 + 3 NA Intergenic L1M4|LINE|L1 140188 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 652-27 chr11 40463736 40464131 + 3 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -170803 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 496-266 chr7 89747441 89747747 + 3 NA Intergenic Intergenic -371806 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 285-31 chr10 25565383 25565531 + 3 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -86255 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 1121-3 chr12 16103246 16103836 + 3 NA Intergenic L1ME1|LINE|L1 174144 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 743-87 chr8 136310462 136310845 + 3 NA Intergenic Intergenic -220145 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 336-548 chr8 110679623 110679800 + 3 NA Intergenic AluJo|SINE|Alu 347722 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 427-40 chr11 114864018 114864256 + 3 NA Intergenic Intergenic 185610 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 232-243 chr3 84295579 84295736 + 3 NA Intergenic Intergenic 573918 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 468-29 chr10 41869368 41869560 + 3 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 498581 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 547-23 chr10 95851101 95851432 + 3 NA intron (NM_001098175, intron 7 of 9) intron (NM_001098175, intron 7 of 9) -56699 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 685-2 chr1 71099322 71099749 + 3 NA intron (NR_046217, intron 2 of 3) intron (NR_046217, intron 2 of 3) 18211 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 376-290 chr4 98863676 98863886 + 3 NA Intergenic AluSp|SINE|Alu 65352 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 316-577 chr9 23309183 23309334 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 363141 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 533-169 chr4 176859615 176859865 + 3 NA Intergenic L1MA6|LINE|L1 -15962 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 1232-10 chr9 69780645 69781267 + 3 NA Intergenic L1PB1|LINE|L1 -20945 NM_001366937 375743 Hs.744192 NM_001099666 ENSG00000188647 PTAR1 - protein prenyltransferase alpha subunit repeat containing 1 protein-coding 491-69 chr14 60368258 60368579 + 3 NA Intergenic MamRTE1|LINE|RTE-BovB 45222 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 487-97 chr15 47626282 47626609 + 3 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -91060 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 447-148 chr2 226070744 226070903 + 3 NA Intergenic Intergenic -71971 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 371-162 chr2 41600560 41600758 + 3 NA Intergenic Intergenic -276896 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 451-203 chr6 148120768 148120981 + 3 NA Intergenic Intergenic -151454 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 940-5 chr11 50431792 50432140 + 3 NA Intergenic ALR/Alpha|Satellite|centr 22819 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 447-210 chr5 33104901 33105114 + 3 NA Intergenic L1PA15-16|LINE|L1 -124728 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 437-209 chr5 22497065 22497253 + 3 NA intron (NM_004061, intron 2 of 14) L2a|LINE|L2 -283309 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 1339-4 chr2 79483751 79484561 + 3 NA Intergenic AluJb|SINE|Alu 16688 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 681-17 chr14 45473657 45473981 + 3 NA Intergenic Intergenic -220617 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 396-208 chr3 6405405 6405612 + 3 NA Intergenic L1MCa|LINE|L1 399941 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 936-20 chr20 47059477 47059951 + 3 NA intron (NM_172110, intron 5 of 13) MamGypLTR1c|LTR|Gypsy -107253 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 292-93 chr12 20216378 20216543 + 3 NA Intergenic L2a|LINE|L2 -88559 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 464-143 chr20 13976168 13976387 + 3 NA intron (NM_001363752, intron 1 of 16) AluSg|SINE|Alu 14337 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 664-35 chr12 60321030 60321309 + 3 NA Intergenic Intergenic 631799 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 656-110 chr6 101828464 101828912 + 3 NA intron (NM_001166247, intron 9 of 16) L1PA17|LINE|L1 429703 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 664-11 chr1 187862674 187863038 + 3 NA Intergenic Intergenic 419228 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 848-6 chr10 39268099 39268497 + 3 NA Intergenic ALR/Alpha|Satellite|centr 571702 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 583-132 chr5 21264301 21264635 + 3 NA Intergenic Intergenic -195012 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 534-176 chr4 53897862 53898144 + 3 NA Intergenic Intergenic 89279 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 619-46 chr14 60907888 60908239 + 3 NA intron (NM_001177963, intron 6 of 6) Zaphod3|DNA|hAT-Tip100 73016 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 492-223 chr5 154433692 154433919 + 3 NA intron (NR_037897, intron 2 of 2) Tigger8|DNA|TcMar-Tigger 12017 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 603-31 chr12 60226088 60226343 + 3 NA Intergenic L1M4c|LINE|L1 536845 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 285-189 chr2 15389316 15389498 + 3 NA intron (NR_052013, intron 28 of 50) intron (NR_052013, intron 28 of 50) 171927 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 1030-12 chr16 68482082 68482626 + 3 NA Intergenic L1MEd|LINE|L1 -33846 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 599-75 chr22 25046396 25046678 + 3 NA intron (NM_001145206, intron 3 of 10) (TATTT)n|Simple_repeat|Simple_repeat 18563 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 571-60 chr17 12835374 12835829 + 3 NA intron (NM_001321164, intron 1 of 20) intron (NM_001321164, intron 1 of 20) -45317 NR_104607 100128006 Hs.567641 NR_104607 ENSG00000265489 LOC100128006 - uncharacterized LOC100128006 ncRNA 522-176 chr3 73388971 73389307 + 3 NA intron (NM_001303139, intron 5 of 7) intron (NM_001303139, intron 5 of 7) 44856 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 612-83 chr22 33383706 33383969 + 3 NA intron (NM_133642, intron 8 of 14) intron (NM_133642, intron 8 of 14) 52832 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 438-15 chr1 172729410 172729596 + 3 NA Intergenic L1PA15-16|LINE|L1 70400 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 474-44 chr11 26825661 26825905 + 3 NA Intergenic L1ME2|LINE|L1 -103723 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 335-380 chr4 39306664 39306786 + 3 NA intron (NM_001204747, intron 13 of 24) intron (NM_001204747, intron 13 of 24) 59637 NM_002913 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 323-301 chr21 7950777 7950963 + 3 NA Intergenic (CATTC)n|Satellite|Satellite -121238 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 477-157 chr2 102653809 102654015 + 3 NA intron (NM_003048, intron 1 of 11) intron (NM_003048, intron 1 of 11) 34359 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 486-211 chr3 134081459 134081731 + 3 NA Intergenic LTR40c|LTR|ERVL -23947 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 353-109 chr12 41866116 41866309 + 3 NA Intergenic Intergenic 102023 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 670-34 chr14 62032815 62033082 + 3 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -84409 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 892-17 chr15 100510425 100510860 + 3 NA intron (NM_001290341, intron 3 of 13) MLT1J2|LTR|ERVL-MaLR 33644 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 505-47 chr11 40981922 40982122 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 477614 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 495-232 chr7 20733007 20733289 + 3 NA intron (NM_178559, intron 14 of 18) MIRb|SINE|MIR 53738 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 456-261 chr5 146885593 146885778 + 3 NA intron (NM_001271900, intron 2 of 10) L1MB7|LINE|L1 -6758 NR_073527 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 184-29 chr10 68392496 68392619 + 3 NA intron (NR_103476, intron 7 of 18) intron (NR_103476, intron 7 of 18) 14632 NM_017987 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 420-203 chr4 71582171 71582328 + 3 NA Intergenic L1MC3|LINE|L1 201830 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 333-622 chrX 68972594 68972780 + 3 NA Intergenic L1MA9|LINE|L1 143690 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 431-234 chr5 151586507 151586734 + 3 NA Intergenic Intergenic -17676 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 551-125 chr3 158510355 158510641 + 3 NA intron (NM_001271838, intron 7 of 9) intron (NM_001271838, intron 7 of 9) -16210 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 550-47 chr11 88264520 88264710 + 3 NA Intergenic L1PA14|LINE|L1 73121 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 695-5 chr1 110829799 110830201 + 3 NA Intergenic MER21C|LTR|ERVL -41199 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 259-378 chr8 28224810 28224998 + 3 NA Intergenic Intergenic -92364 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 649-22 chr12 128526156 128526512 + 3 NA intron (NM_001136103, intron 2 of 8) MLT1A0|LTR|ERVL-MaLR 232242 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 603-85 chr2 77841279 77841636 + 3 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -74477 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 550-60 chr12 87028544 87028869 + 3 NA Intergenic Intergenic -189706 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 636-92 chr3 67870141 67870421 + 3 NA intron (NR_109992, intron 5 of 6) intron (NR_109992, intron 5 of 6) -121311 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 688-86 chr5 9916882 9917325 + 3 NA Intergenic Intergenic -13279 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 567-46 chr13 51104245 51104522 + 3 NA intron (NR_102432, intron 1 of 3) intron (NR_102432, intron 1 of 3) 6845 NM_001351589 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 455-203 chr4 184135317 184135602 + 3 NA intron (NM_153343, intron 2 of 7) L1ME3Cz|LINE|L1 82414 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 347-110 chr13 69055939 69056091 + 3 NA Intergenic L1PB4|LINE|L1 -166331 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 450-241 chr5 55270790 55271034 + 3 NA intron (NR_144323, intron 18 of 26) intron (NR_144323, intron 18 of 26) 36782 NR_144324 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 460-296 chr8 122489776 122489947 + 3 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 78783 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 759-5 chr1 166057718 166058059 + 3 NA non-coding (NR_135199, exon 3 of 3) non-coding (NR_135199, exon 3 of 3) 96910 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 568-151 chr4 64934388 64934654 + 3 NA intron (NR_033976, intron 5 of 6) L1MB1|LINE|L1 69979 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 391-20 chr1 189477271 189477492 + 3 NA Intergenic Intergenic 998629 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 592-40 chr12 127894043 127894424 + 3 NA intron (NR_033987, intron 2 of 2) intron (NR_033987, intron 2 of 2) 12616 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 781-55 chr5 151812901 151813345 + 3 NA TTS (NM_005754) TTS (NM_005754) -40947 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 681-79 chr7 78171265 78171642 + 3 NA intron (NM_001301128, intron 13 of 20) MER5A|DNA|hAT-Charlie -175789 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 705-2 chr1 157320276 157320555 + 3 NA Intergenic L1PA6|LINE|L1 -181824 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 578-147 chr5 158595287 158595621 + 3 NA Intergenic Intergenic -185681 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 642-17 chr11 34765713 34766024 + 3 NA Intergenic L1M2a|LINE|L1 133302 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 416-267 chr5 24055987 24056222 + 3 NA intron (NR_131245, intron 4 of 4) L1MA3|LINE|L1 104756 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 1141-9 chr8 46507909 46508548 + 3 NA Intergenic ALR/Alpha|Satellite|centr 109415 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 548-184 chr5 92973500 92973749 + 3 NA Intergenic Intergenic 597719 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 395-73 chr12 64378108 64378290 + 3 NA intron (NM_001099676, intron 1 of 10) MLT1I|LTR|ERVL-MaLR 12559 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 542-121 chr20 51810401 51810765 + 3 NA Intergenic Intergenic -8062 NM_001318031 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 640-65 chr2 125563088 125563478 + 3 NA Intergenic Intergenic 554702 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 397-61 chr12 25798622 25798836 + 3 NA Intergenic L2c|LINE|L2 75350 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 438-283 chr8 129052944 129053204 + 3 NA Intergenic Intergenic -87073 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 533-5 chr1 78763387 78763704 + 3 NA Intergenic Intergenic 113714 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 1531 chr13 19110612 19111463 + 3 NA intron (NR_146902, intron 3 of 4) MER4-int|LTR|ERV1 7246 NR_146902 107984132 Hs.614937 NR_146902 LOC107984132 - uncharacterized LOC107984132 ncRNA 1071-27 chr9 28742661 28743211 + 3 NA intron (NM_001354574, intron 2 of 5) L1M4b|LINE|L1 -23631 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 544-78 chr15 87368201 87368411 + 3 NA Intergenic L1PA16|LINE|L1 -208623 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 650-89 chr4 87708205 87708593 + 3 NA Intergenic MIRb|SINE|MIR 58119 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 1531-2 chr21 17033442 17034147 + 3 NA Intergenic Intergenic -405096 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 694-29 chr12 123644694 123645231 + 3 NA intron (NM_001271866, intron 2 of 10) intron (NM_001271866, intron 2 of 10) 11133 NM_001271867 2967 Hs.355348 NM_001516 ENSG00000111358 GTF2H3 BTF2|P34|TFB4|TFIIH general transcription factor IIH subunit 3 protein-coding 596-22 chr10 29720740 29721057 + 3 NA intron (NM_001323599, intron 1 of 38) AluSz6|SINE|Alu 14903 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 426-219 chr5 3898930 3899138 + 3 NA Intergenic Intergenic 303202 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 432-296 chr9 25204879 25205108 + 3 NA Intergenic L1ME5|LINE|L1 473865 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 806-44 chr4 45987561 45987960 + 3 NA Intergenic L1MA7|LINE|L1 136294 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 499-64 chr13 57572908 57573142 + 3 NA Intergenic L1PA16|LINE|L1 -58719 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 546-194 chr5 103737976 103738183 + 3 NA Intergenic Intergenic -175290 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 240-343 chr5 22599756 22599906 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 253513 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 718-54 chr3 100796219 100796483 + 3 NA intron (NM_001349330, intron 46 of 61) intron (NM_001349330, intron 46 of 61) 86809 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 796-22 chr18 23914962 23915481 + 3 NA intron (NM_001127717, intron 57 of 73) intron (NM_001127717, intron 57 of 73) 42201 NM_000227 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 541-137 chr20 16532261 16532550 + 3 NA intron (NM_001199866, intron 1 of 22) intron (NM_001199866, intron 1 of 22) 41043 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 574-128 chr4 90799964 90800176 + 3 NA intron (NM_001145065, intron 7 of 10) L1PA13|LINE|L1 565039 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 613-89 chr3 189719562 189719901 + 3 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) -69928 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 511-4 chr1 80332429 80332676 + 3 NA Intergenic Intergenic -203203 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 509-50 chr11 124061779 124062127 + 3 NA Intergenic L1PA11|LINE|L1 -22952 NM_001004463 390265 Hs.553761 NM_001004463 ENSG00000182634 OR10G7 OR11-283 olfactory receptor family 10 subfamily G member 7 protein-coding 463-287 chr8 89723195 89723483 + 3 NA intron (NR_125822, intron 3 of 4) MIR|SINE|MIR 34372 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 275-291 chr5 63910962 63911070 + 3 NA Intergenic L2a|LINE|L2 51276 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 766-76 chrX 45702526 45702879 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -28386 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 364-178 chr18 1815056 1815240 + 3 NA Intergenic L1MB8|LINE|L1 -455519 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 499-211 chr5 132718081 132718343 + 3 NA intron (NM_007054, intron 5 of 16) L1ME3G|LINE|L1 19334 NM_007054 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 363-70 chr10 129080305 129080495 + 3 NA Intergenic L1ME3|LINE|L1 167567 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 627-5 chr1 217057659 217058031 + 3 NA intron (NM_001243509, intron 1 of 8) MER30|DNA|hAT-Charlie 19147 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 500-24 chr10 32863440 32863857 + 3 NA intron (NM_001321115, intron 42 of 43) L1M2a|LINE|L1 37824 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 352-171 chr16 62382489 62382730 + 3 NA Intergenic Intergenic -346171 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 844-12 chr12 17398523 17398870 + 3 NA Intergenic L2a|LINE|L2 190382 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 682-107 chr8 132586610 132586983 + 3 NA intron (NR_135913, intron 9 of 10) LTR16A|LTR|ERVL -25317 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 473-109 chr17 65338581 65338887 + 3 NA Intergenic L1M5|LINE|L1 -118807 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 578-12 chr1 178016703 178017047 + 3 NA intron (NR_151484, intron 3 of 3) intron (NR_151484, intron 3 of 3) 21101 NR_151492 111240474 NM_001356505 CRYZL2P-SEC16B - CRYZL2P-SEC16B readthrough protein-coding 462-281 chr8 80190088 80190300 + 3 NA Intergenic MER89-int|LTR|ERV1 -18630 NR_105034 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 492-218 chr5 122294032 122294370 + 3 NA Intergenic L1PA17|LINE|L1 -17490 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 297-438 chr7 51884339 51884475 + 3 NA Intergenic Intergenic -491151 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 437-17 chr10 9888689 9888880 + 3 NA Intergenic Intergenic -169938 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 408-83 chr12 51293574 51293822 + 3 NA intron (NM_001290007, intron 9 of 12) L1ME3C|LINE|L1 -23283 NM_001031628 57228 Hs.652389 NM_001031628 ENSG00000170545 SMAGP hSMAGP small cell adhesion glycoprotein protein-coding 455-73 chr14 70755928 70756138 + 3 NA intron (NM_033141, intron 3 of 12) intron (NM_033141, intron 3 of 12) 27419 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 878-16 chr14 87759473 87759971 + 3 NA Intergenic Intergenic -104428 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 428-250 chr6 5744300 5744568 + 3 NA intron (NM_006567, intron 6 of 6) MIRb|SINE|MIR -49162 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 707-49 chr2 47969143 47969624 + 3 NA Intergenic L1MB7|LINE|L1 -63590 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 555-157 chr5 39359369 39359668 + 3 NA intron (NM_001737, intron 1 of 10) L2a|LINE|L2 4977 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 454-41 chr10 111667875 111668086 + 3 NA Intergenic L1MCa|LINE|L1 515785 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 479-228 chr7 31231303 31231537 + 3 NA Intergenic Intergenic 109306 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 1292-2 chr11 63469569 63470496 + 3 NA intron (NM_054108, intron 3 of 5) AluSx|SINE|Alu 21135 NM_001146728 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 707-99 chr7 106404316 106404715 + 3 NA Intergenic Intergenic -119532 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 415-16 chr1 178980206 178980368 + 3 NA Intergenic L1MA4|LINE|L1 -45517 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 559-165 chr6 158733020 158733362 + 3 NA intron (NM_001242394, intron 11 of 17) LTR10E|LTR|ERV1 31562 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 425-114 chr18 10998690 10998920 + 3 NA intron (NM_022068, intron 2 of 51) intron (NM_022068, intron 2 of 51) 149957 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 541-116 chr2 80340970 80341183 + 3 NA intron (NM_001282599, intron 1 of 11) MER21C|LTR|ERVL 27697 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 527-135 chr2 99024696 99024989 + 3 NA intron (NM_001349013, intron 13 of 16) L1MB7|LINE|L1 -88617 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 642-86 chr4 173342870 173343193 + 3 NA Intergenic Intergenic -8673 NM_001130688 3148 Hs.434953 NM_002129 ENSG00000164104 HMGB2 HMG2 high mobility group box 2 protein-coding 582-165 chr9 581212 581482 + 3 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) 76792 NM_001354333 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 485-111 chr18 60162803 60163023 + 3 NA Intergenic Intergenic 209862 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 448-5 chr1 82908872 82909157 + 3 NA intron (NR_147074, intron 2 of 10) L2a|LINE|L2 5831 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 457-262 chr8 123896164 123896337 + 3 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 44263 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 483-210 chr5 82142114 82142428 + 3 NA intron (NM_031482, intron 3 of 7) L2c|LINE|L2 136083 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 539-136 chr21 21915671 21916100 + 3 NA Intergenic Intergenic 168900 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 508-39 chr11 18806847 18807112 + 3 NA Intergenic L1MA7|LINE|L1 -14258 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 796-8 chr11 41551010 41551480 + 3 NA Intergenic Intergenic -91593 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 509-147 chr3 44564086 44564341 + 3 NA intron (NR_157564, intron 2 of 2) intron (NR_157564, intron 2 of 2) 9020 NM_025169 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 690-90 chr6 54248926 54249407 + 3 NA intron (NM_138569, intron 11 of 12) intron (NM_138569, intron 11 of 12) -59275 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 454-141 chr2 21572191 21572368 + 3 NA Intergenic L2a|LINE|L2 138373 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 616-153 chr7 7485795 7486050 + 3 NA intron (NM_001037763, intron 13 of 34) L1MD|LINE|L1 49951 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 647-50 chr2 126897590 126898040 + 3 NA Intergenic AluSp|SINE|Alu -1075 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 587-161 chr8 43801015 43801235 + 3 NA Intergenic ALR/Alpha|Satellite|centr 508683 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 359-238 chr2 107476294 107476452 + 3 NA Intergenic L1M4|LINE|L1 -53046 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 490-34 chr1 245214072 245214383 + 3 NA intron (NR_151721, intron 3 of 4) AluJr|SINE|Alu 20290 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 452-181 chr4 32746864 32747155 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 395971 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 455-155 chr22 39862841 39863117 + 3 NA intron (NM_152512, intron 2 of 6) MLT1A1|LTR|ERVL-MaLR 30781 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 523-100 chr16 73352774 73353026 + 3 NA Intergenic Intergenic -33905 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 547-165 chr4 103980773 103980977 + 3 NA Intergenic L2c|LINE|L2 -260890 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 355-212 chr18 14048431 14048585 + 3 NA Intergenic L1PA14|LINE|L1 83927 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 655-10 chr1 179407577 179408002 + 3 NA intron (NR_073544, intron 11 of 25) L1M2|LINE|L1 41745 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 615-150 chrX 40451899 40452269 + 3 NA Intergenic LTR102_Mam|LTR|ERVL -128886 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 673-34 chr15 60843713 60844140 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 162357 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 626-118 chr5 100144740 100145058 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 243355 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 569-181 chr8 129029454 129029825 + 3 NA Intergenic Intergenic -63638 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 462-126 chr19 51959070 51959305 + 3 NA intron (NR_103847, intron 1 of 2) L2b|LINE|L2 10053 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 474-94 chr15 69700903 69701277 + 3 NA Intergenic Intergenic 108890 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 531-206 chr5 165824307 165824606 + 3 NA Intergenic L1MB3|LINE|L1 1101914 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 737-10 chr11 78289088 78289470 + 3 NA intron (NM_080491, intron 1 of 9) L1MD|LINE|L1 52601 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 433-64 chr12 88032398 88032597 + 3 NA Intergenic Intergenic -3039 NM_001009894 91298 Hs.591009 NM_001009894 ENSG00000133641 C12orf29 - chromosome 12 open reading frame 29 protein-coding 349-109 chr12 2064278 2064489 + 3 NA intron (NM_199460, intron 1 of 49).2 intron (NM_199460, intron 1 of 49).2 11098 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 662-35 chr17 69980980 69981411 + 3 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 19488 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 687-115 chr8 25520214 25520551 + 3 NA Intergenic LOR1b|LTR|ERV1 61149 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 322-582 chrX 80210933 80211132 + 3 NA Intergenic LOR1-int|LTR|ERV1 124286 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 761-78 chr9 69840669 69841169 + 3 NA intron (NR_131757, intron 1 of 2) L4_C_Mam|LINE|RTE-X 20102 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 677-5 chr1 69189755 69190085 + 3 NA Intergenic Intergenic 134022 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 506-71 chr13 36768561 36768731 + 3 NA Intergenic Intergenic -50556 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 539-156 chr4 32448876 32449076 + 3 NA Intergenic Intergenic 97938 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 1224-7 chr5 79408189 79408960 + 3 NA intron (NM_004272, intron 5 of 8) L1MCc|LINE|L1 105262 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 431-306 chr8 134406250 134406504 + 3 NA Intergenic L1MA9|LINE|L1 -191694 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 957-2 chr1 60330645 60331254 + 3 NA Intergenic Intergenic -257179 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 215-61 chr12 5598902 5598990 + 3 NA intron (NM_001278596, intron 21 of 25) intron (NM_001278596, intron 21 of 25) 104814 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 661-19 chr12_GL877875v1_alt 48353 48723 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -12244 NM_001170738 440073 Hs.536319 NM_015232 ENSG00000120645 IQSEC3 - IQ motif and Sec7 domain 3 protein-coding 837-12 chr19 31862413 31862769 + 3 NA Intergenic L1MEg|LINE|L1 -163271 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 556-120 chr2 226231786 226232039 + 3 NA Intergenic L1ME3|LINE|L1 89118 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 1267-8 chr8 63617725 63618373 + 3 NA Intergenic L1PA16|LINE|L1 -151381 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 524-181 chr4 79872412 79872637 + 3 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat 45053 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 496-38 chr10 78820896 78821140 + 3 NA Intergenic Intergenic 246430 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 658-74 chr20 42140366 42140684 + 3 NA intron (NM_133170, intron 19 of 31) intron (NM_133170, intron 19 of 31) -522148 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 374-172 chr2 14644093 14644249 + 3 NA intron (NR_144632, intron 3 of 4) intron (NR_144632, intron 3 of 4) 11454 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 950-19 chr3 5657866 5658499 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -407927 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 782-61 chr7 50025145 50025700 + 3 NA intron (NM_001159878, intron 5 of 7) L1MC|LINE|L1 67824 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 472-31 chr10 42388271 42388478 + 3 NA Intergenic AluSx1|SINE|Alu -20329 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 223-269 chr5 28608286 28608405 + 3 NA Intergenic Intergenic -318525 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 668-30 chr14 61902381 61902856 + 3 NA intron (NM_001367661, intron 2 of 8) MLT1C|LTR|ERVL-MaLR -25077 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 376-230 chr21 27062528 27062822 + 3 NA Intergenic Intergenic -95587 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 959-6 chr12 73177616 73178218 + 3 NA intron (NR_110130, intron 2 of 3) L1M1|LINE|L1 18727 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 857-27 chr2 47116073 47116586 + 3 NA intron (NM_001163561, intron 5 of 6) intron (NM_001163561, intron 5 of 6) 38979 NM_001163561 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 413-171 chr20 53526426 53526627 + 3 NA Intergenic AluJo|SINE|Alu -26244 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 297-345 chr4 149630424 149630672 + 3 NA intron (NM_001363507, intron 7 of 13) intron (NM_001363507, intron 7 of 13) 185295 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 396-9 chr1 67508705 67508865 + 3 NA Intergenic Intergenic -78383 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 780-54 chr6 24161724 24162165 + 3 NA Intergenic Intergenic 35729 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 519-67 chr15 81649698 81650075 + 3 NA Intergenic L1PB3|LINE|L1 -275673 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 601-62 chr18 13703420 13703761 + 3 NA intron (NM_001098801, intron 1 of 4) MER57-int|LTR|ERV1 22968 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 492-14 chr1 191718181 191718394 + 3 NA Intergenic L2a|LINE|L2 -440175 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 335-531 chr8 70750048 70750223 + 3 NA Intergenic Intergenic 80796 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 565-122 chr3 143102882 143103178 + 3 NA Intergenic L1PA16|LINE|L1 -16741 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 478-135 chr2 48348709 48349019 + 3 NA intron (NM_002158, intron 3 of 6) L1MEg|LINE|L1 34182 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 376-337 chr5 163657011 163657231 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 151502 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 648-113 chr5 62848179 62848446 + 3 NA Intergenic L1M2|LINE|L1 269493 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 712-49 chr2 202742976 202743457 + 3 NA intron (NM_173511, intron 4 of 7) L1M2|LINE|L1 86018 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 865-18 chr18 1231545 1231978 + 3 NA Intergenic L1PA13|LINE|L1 127868 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 267-105 chr14 43472112 43472222 + 3 NA Intergenic Intergenic 1035116 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 567-154 chr6 38474177 38474509 + 3 NA intron (NM_001172418, intron 5 of 10) AluSx|SINE|Alu -7253 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 737-82 chr8 55344168 55344632 + 3 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 110921 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 473-218 chr5 54335768 54336127 + 3 NA intron (NR_126379, intron 1 of 4) L1M2|LINE|L1 15003 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 644-104 chr8 87230193 87230672 + 3 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 364017 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 534-256 chr8 83614989 83615282 + 3 NA Intergenic Intergenic 211377 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 398-203 chr3 58996287 58996522 + 3 NA intron (NR_147235, intron 4 of 6) intron (NR_147235, intron 4 of 6) 53621 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 540-190 chr7 3107342 3107589 + 3 NA Intergenic Intergenic 51108 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 524-95 chr18 7649269 7649486 + 3 NA intron (NM_002845, intron 1 of 30) Tigger1|DNA|TcMar-Tigger 82061 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 743-32 chr19 27653447 27653995 + 3 NA Intergenic HSAT4|Satellite|centr -139710 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 572-2 chr1 37289318 37289674 + 3 NA Intergenic Intergenic 127933 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 440-26 chr10 75731881 75732067 + 3 NA intron (NR_132791, intron 1 of 2) intron (NR_132791, intron 1 of 2) 19519 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 299-236 chr2 179626256 179626413 + 3 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 33860 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 596-62 chr14 79767705 79767986 + 3 NA intron (NR_073547, intron 18 of 20) L1PA3|LINE|L1 -443574 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 696-43 chr15 70679680 70680019 + 3 NA intron (NM_018003, intron 9 of 18) intron (NM_018003, intron 9 of 18) 22433 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 818-3 chr1 180309158 180309471 + 3 NA intron (NM_032360, intron 7 of 7) intron (NM_032360, intron 7 of 7) -34633 NR_037642 100527964 Hs.496545 NR_037642 ENSG00000230124 LHX4-AS1 - LHX4 antisense RNA 1 ncRNA 409-70 chr14 34373566 34373760 + 3 NA Intergenic Intergenic 88577 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 368-225 chr2 24397791 24397980 + 3 NA Intergenic L1ME3E|LINE|L1 -37349 NM_001348185 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 771-76 chr6 80991807 80992178 + 3 NA Intergenic L1ME1|LINE|L1 760689 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 407-95 chr15 100460624 100460875 + 3 NA intron (NM_001290341, intron 12 of 13) intron (NM_001290341, intron 12 of 13) 83537 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 627-2 chr1 80805420 80805858 + 3 NA Intergenic Intergenic 164352 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 602-74 chr20 143871 144082 + 3 NA intron (NM_030931, intron 1 of 1) intron (NM_030931, intron 1 of 1) 1386 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 667-102 chr7 30590953 30591400 + 3 NA Intergenic L1ME2|LINE|L1 -3559 NM_001316772 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 416-105 chr13 66893535 66893719 + 3 NA intron (NR_046527, intron 4 of 5) MER112|DNA|hAT-Charlie 68458 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 480-73 chr14 53760487 53760782 + 3 NA Intergenic HAL1ME|LINE|L1 187850 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 470-212 chr5 42526749 42527058 + 3 NA intron (NM_001242400, intron 2 of 10) L1PREC2|LINE|L1 -21140 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 456-203 chr3 88972397 88972665 + 3 NA Intergenic HAL1b|LINE|L1 -135090 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 985-12 chr19 36451417 36451840 + 3 NA intron (NM_001145345, intron 4 of 4) MIRb|SINE|MIR 30454 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 565-163 chr6 158968698 158969142 + 3 NA Intergenic AluSc|SINE|Alu 31267 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 573-49 chr12 29462215 29462544 + 3 NA intron (NM_001353179, intron 18 of 25) (AT)n|Simple_repeat|Simple_repeat 37314 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 485-30 chr10 42849119 42849421 + 3 NA Intergenic MLT2B4|LTR|ERVL -22251 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 454-188 chr20 39968870 39969025 + 3 NA Intergenic Intergenic -35514 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 494-214 chr4 173035937 173036116 + 3 NA intron (NM_001034845, intron 12 of 12) MIRb|SINE|MIR -132785 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 478-183 chr3 42470731 42470949 + 3 NA Intergenic AluJo|SINE|Alu -18459 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 564-19 chr10 64571643 64571922 + 3 NA Intergenic Intergenic -253746 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 536-159 chr3 34330415 34330599 + 3 NA Intergenic L1MA8|LINE|L1 531877 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 316-13 chr1 76664487 76664626 + 3 NA Intergenic Intergenic 114711 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 518-224 chr5 14551505 14551718 + 3 NA Intergenic LTR40a|LTR|ERVL -30181 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 683-63 chr5 20669832 20670225 + 3 NA intron (NR_149120, intron 2 of 11) L1ME3|LINE|L1 -54493 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 782-75 chr9 29812183 29812655 + 3 NA Intergenic L1MA9|LINE|L1 596035 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 914-14 chr2 279790 280193 + 3 NA 3' UTR (NM_001002919, exon 6 of 6) 3' UTR (NM_001002919, exon 6 of 6) 8100 NM_001002919 285016 Hs.355207 NM_001002919 ENSG00000189292 ALKAL2 AUGA|FAM150B|PRO1097|RGPG542 ALK and LTK ligand 2 protein-coding 612-152 chr9 96275762 96276116 + 3 NA intron (NM_000197, intron 2 of 10) L1MA9|LINE|L1 26237 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 933-39 chr7 62982906 62983590 + 3 NA Intergenic ALR/Alpha|Satellite|centr 320808 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 485-155 chr2 187145791 187146016 + 3 NA Intergenic L1M4|LINE|L1 -296733 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 558-159 chr4 94599790 94600046 + 3 NA intron (NM_006457, intron 7 of 12) L2a|LINE|L2 147976 NM_001256428 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 586-48 chr14 26054121 26054470 + 3 NA Intergenic Intergenic 499135 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 786-29 chr2 15029212 15029745 + 3 NA Intergenic Tigger20a|DNA|TcMar-Tigger 396761 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 435-58 chr12 17580515 17580787 + 3 NA Intergenic Intergenic 8427 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 367-344 chr5 12248674 12248861 + 3 NA Intergenic L1MEf|LINE|L1 -326090 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 709-64 chr4 18751077 18751395 + 3 NA Intergenic Intergenic -729361 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 658-66 chr2 115625677 115626063 + 3 NA intron (NM_001321912, intron 6 of 25) L1MC4a|LINE|L1 282055 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 477-141 chr2 19175020 19175228 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -148153 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 444-73 chr15 56753926 56754077 + 3 NA Intergenic MIRb|SINE|MIR -19915 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 373-76 chr11 23893267 23893453 + 3 NA Intergenic Intergenic -474170 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 603-118 chr4 34301423 34301870 + 3 NA Intergenic Intergenic -31899 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 623-124 chr8 11520810 11521243 + 3 NA intron (NM_001330465, intron 1 of 11).2 L1ME4a|LINE|L1 26639 NM_001330465 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 838-11 chr13 20334849 20335199 + 3 NA Intergenic L3|LINE|CR1 98822 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 499-20 chr1 248232905 248233184 + 3 NA Intergenic Intergenic -5885 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 294-298 chr3 82252959 82253110 + 3 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 266892 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 652-54 chr17 53663810 53664214 + 3 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -158915 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 465-20 chr10 9514901 9515171 + 3 NA Intergenic MIR|SINE|MIR -219443 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 580-173 chr7 1635411 1635770 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 21120 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 285-242 chr20 34576693 34576884 + 3 NA intron (NM_080476, intron 10 of 11) L1MC1|LINE|L1 18070 NM_032514 84557 Hs.632273 NM_032514 ENSG00000101460 MAP1LC3A ATG8E|LC3|LC3A|MAP1ALC3|MAP1BLC3 microtubule associated protein 1 light chain 3 alpha protein-coding 708-79 chr8 43592914 43593235 + 3 NA Intergenic ALR/Alpha|Satellite|centr 300632 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 400-162 chr2 57001031 57001172 + 3 NA Intergenic L1PA12|LINE|L1 -815331 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 543-232 chr7 64916700 64916911 + 3 NA intron (NM_021148, intron 1 of 3) L1PA8|LINE|L1 13563 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 299-410 chr7 23784796 23785006 + 3 NA intron (NM_031414, intron 17 of 23) intron (NM_031414, intron 17 of 23) 74682 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 491-183 chr4 66433019 66433322 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 156346 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 818-11 chr11 91585934 91586256 + 3 NA Intergenic Intergenic -638939 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 521-240 chr7 85160490 85160792 + 3 NA Intergenic CR1-L3A_Croc|LINE|CR1 -38710 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 509-175 chr4 61474564 61474835 + 3 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 272527 NM_001371342 375-17 chr1 114793619 114793775 + 3 NA Intergenic LTR57-int|LTR|ERVL -13012 NM_025073 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 1011-13 chr3 169056486 169057058 + 3 NA Intergenic Intergenic 88751 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 398-336 chr7 125867460 125867687 + 3 NA Intergenic Intergenic -603282 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 424-151 chr2 215643264 215643479 + 3 NA intron (NR_037195, intron 5 of 9) MER102a|DNA|hAT-Charlie -74672 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 522-28 chr10 85212490 85212789 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -13701 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 474-261 chr7 25343228 25343515 + 3 NA Intergenic Intergenic -114885 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 397-326 chr8 25502518 25502805 + 3 NA intron (NM_001317906, intron 12 of 13) intron (NM_001317906, intron 12 of 13) 43428 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 345-410 chr5 24168401 24168546 + 3 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 217125 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 490-245 chr6 113379577 113379860 + 3 NA Intergenic Intergenic 53729 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 453-47 chr12 22252592 22252840 + 3 NA intron (NM_001304450, intron 2 of 3) intron (NM_001304450, intron 2 of 3) 81998 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 541-123 chr2 115412649 115412883 + 3 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 68951 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 290-34 chr1 228800726 228800843 + 3 NA Intergenic L2|LINE|L2 65305 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 620-141 chr8 59680491 59681001 + 3 NA Intergenic AluSx1|SINE|Alu 561536 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 563-117 chr22 45394685 45395020 + 3 NA intron (NM_148674, intron 7 of 24) intron (NM_148674, intron 7 of 24) 18747 NM_148674 27127 Hs.334176 NM_148674 ENSG00000077935 SMC1B SMC1BETA|SMC1L2 structural maintenance of chromosomes 1B protein-coding 653-62 chr2 3873648 3874129 + 3 NA Intergenic Intergenic 100144 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 341-532 chr8 114946189 114946390 + 3 NA Intergenic HUERS-P1-int|LTR|ERV1 721724 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 383-285 chr4 68618613 68618786 + 3 NA Intergenic L1M1|LINE|L1 -50172 NM_001077 7367 Hs.575083 NM_001077 ENSG00000197888 UGT2B17 BMND12|UDPGT2B17 UDP glucuronosyltransferase family 2 member B17 protein-coding 593-56 chr17 13743190 13743419 + 3 NA Intergenic Intergenic -141375 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 468-312 chr8 64954810 64955070 + 3 NA Intergenic L1PA4|LINE|L1 -156203 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 524-157 chr3 141578437 141578630 + 3 NA intron (NM_006506, intron 15 of 23) MIRb|SINE|MIR -84666 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 478-58 chr12 21962008 21962191 + 3 NA Intergenic L1M2|LINE|L1 -25405 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 465-211 chr4 176006432 176006680 + 3 NA Intergenic LTR49-int|LTR|ERV1 -3865 NM_201592 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 851-5 chr10 83039046 83039491 + 3 NA Intergenic LTR80A|LTR|ERVL 637821 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 459-167 chr21 29255466 29255807 + 3 NA intron (NR_027072, intron 1 of 1) L1ME1|LINE|L1 -43286 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 898-36 chr7 65396528 65396953 + 3 NA intron (NM_001287533, intron 4 of 4) AluJr|SINE|Alu 22885 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 559-48 chr14 68347632 68347940 + 3 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 281001 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 550-95 chr18 13596410 13596656 + 3 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -14581 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 577-211 chrX 149422161 149422500 + 3 NA Intergenic L1MEc|LINE|L1 82976 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 285-9 chr1 67954143 67954290 + 3 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 97415 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 634-149 chr8 20661372 20661738 + 3 NA Intergenic Intergenic -46629 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 541-12 chr10 6356390 6356691 + 3 NA Intergenic L1MEd|LINE|L1 6224 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 447-113 chr19 55865833 55866016 + 3 NA intron (NM_134444, intron 5 of 9) L1PA15|LINE|L1 -29162 NM_145007 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 564-34 chr11 92815843 92816071 + 3 NA intron (NM_001008781, intron 12 of 24) intron (NM_001008781, intron 12 of 24) 99671 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 604-52 chr15 95437258 95437686 + 3 NA intron (NR_027133, intron 1 of 5) MIRb|SINE|MIR 4379 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 328-128 chr13 40524019 40524202 + 3 NA Intergenic L1MA5A|LINE|L1 -43104 NR_024507 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 704-69 chr5 123245672 123245999 + 3 NA Intergenic L1ME4a|LINE|L1 -155519 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 1600-4 chr4 89445032 89445874 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -137653 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 430-84 chr14 51832423 51832657 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -28072 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 986-35 chr9 29361370 29362041 + 3 NA Intergenic L1PB|LINE|L1 -148104 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 498-223 chr5 87621756 87621931 + 3 NA Intergenic Intergenic -40199 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 473-290 chr8 144905684 144905909 + 3 NA Intergenic Intergenic -3619 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 452-188 chr4 83512321 83512537 + 3 NA Intergenic Intergenic -23485 NM_001256422 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 525-173 chr4 59244167 59244404 + 3 NA Intergenic L1MB1|LINE|L1 230712 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 373-263 chr3 114918976 114919177 + 3 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -18451 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 451-92 chr17 66866409 66866692 + 3 NA intron (NM_145811, intron 1 of 5) L1PA10|LINE|L1 31433 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 548-228 chr8 54899835 54900144 + 3 NA Intergenic Intergenic -202039 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 462-222 chr5 26084859 26085166 + 3 NA Intergenic L2a|LINE|L2 894059 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 777-18 chr12 118990994 118991467 + 3 NA intron (NM_194286, intron 1 of 12) L2b|LINE|L2 9689 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 857-21 chr14 97897069 97897622 + 3 NA Intergenic Intergenic 80779 NR_152748 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 412-337 chr8 142422216 142422433 + 3 NA Intergenic L1ME1|LINE|L1 -19142 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 413-327 chr9 106803282 106803531 + 3 NA Intergenic L1MA5A|LINE|L1 -59760 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 679-116 chr9 73622102 73622420 + 3 NA Intergenic L1ME4a|LINE|L1 470396 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 447-181 chr3 140054740 140055003 + 3 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 119686 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 610-140 chr5 118672607 118673086 + 3 NA Intergenic L1MA7|LINE|L1 76658 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 568-117 chr2 178463656 178463952 + 3 NA 3' UTR (NM_181342, exon 4 of 4) 3' UTR (NM_181342, exon 4 of 4) 10565 NM_001369912 494513 Hs.87734 NM_001042702 ENSG00000204311 PJVK DFNB59 pejvakin protein-coding 634-33 chr11 111025040 111025325 + 3 NA Intergenic Intergenic 72136 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 377-152 chr16 80897348 80897517 + 3 NA Intergenic Intergenic -4836 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 449-196 chr4 147026601 147026789 + 3 NA Intergenic Intergenic -80809 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 306-522 chr8 122353449 122353624 + 3 NA Intergenic L1MB4|LINE|L1 215108 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 877-15 chr2 78044230 78044745 + 3 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -44243 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 716-94 chrX 40184834 40185329 + 3 NA Intergenic L1M5|LINE|L1 -7752 NM_001123383 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 384-248 chr4 28109622 28109808 + 3 NA Intergenic Intergenic -709867 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 825-19 chr2 117419276 117419726 + 3 NA Intergenic Intergenic -395190 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 429-283 chr7 111386245 111386462 + 3 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 175938 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 581-127 chr5 2530887 2531237 + 3 NA Intergenic Intergenic -181529 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 542-160 chr5 7701294 7701574 + 3 NA intron (NM_020546, intron 7 of 24) intron (NM_020546, intron 7 of 24) 149699 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 334-543 chr8 102186094 102186324 + 3 NA Intergenic LTR78|LTR|ERV1 52622 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 280-448 chr9 119989841 119990020 + 3 NA Intergenic Intergenic 54870 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 622-25 chr13 20215861 20216220 + 3 NA Intergenic L1MD1|LINE|L1 15193 NM_006783 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 691-13 chr11 94100552 94100908 + 3 NA intron (NM_001098672, intron 13 of 19) intron (NM_001098672, intron 13 of 19) -28111 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 151-24 chr14 60454142 60454202 + 3 NA intron (NM_174978, intron 16 of 17) intron (NM_174978, intron 16 of 17) 31891 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 543-103 chr18 3901703 3901999 + 3 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 16498 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 382-426 chr8 135756983 135757157 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR 299614 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 442-169 chr21 24858206 24858491 + 3 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 17798 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 808-37 chr22 26379142 26379689 + 3 NA intron (NM_001184776, intron 14 of 14) MLT1F2|LTR|ERVL-MaLR -49845 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 383-341 chr6 78421626 78421806 + 3 NA Intergenic Intergenic 117593 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 458-259 chr8 91205971 91206177 + 3 NA TTS (NR_039805) TTS (NR_039805) 589 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 629-66 chr2 100056510 100056790 + 3 NA intron (NM_001025108, intron 2 of 23) L3|LINE|CR1 48933 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 688-25 chr11 80749715 80750122 + 3 NA Intergenic Intergenic 12885 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 948-5 chr10 65554344 65554782 + 3 NA Intergenic Intergenic -16862 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 443-230 chr4 157849819 157850137 + 3 NA Intergenic Intergenic 277488 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 419-189 chr3 90578695 90578879 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1471166 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 977-8 chr2 57175553 57176228 + 3 NA Intergenic Intergenic -731761 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 582-2 chr1 38720709 38721036 + 3 NA Intergenic Intergenic 138900 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 421-128 chr2 13972196 13972388 + 3 NA Intergenic MIRb|SINE|MIR 428666 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 497-180 chr3 102321380 102321650 + 3 NA Intergenic L1PA15|LINE|L1 -113500 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 581-33 chr12 98482014 98482344 + 3 NA Intergenic AluJr4|SINE|Alu 21676 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LINC02453 - long intergenic non-protein coding RNA 2453 ncRNA 806-23 chr17 35466846 35467232 + 3 NA Intergenic HERVL74-int|LTR|ERVL -18273 NM_144682 146857 Hs.462833 NM_144682 ENSG00000154760 SLFN13 SLFN10|hSLFN13 schlafen family member 13 protein-coding 804-49 chr4 94426120 94426464 + 3 NA Intergenic L1PA17|LINE|L1 -25565 NR_046186 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 302-86 chr11 101634472 101634610 + 3 NA Intergenic L1ME4a|LINE|L1 -50534 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 489-133 chr2 71877356 71877670 + 3 NA Intergenic AluSx1|SINE|Alu 270349 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 325-51 chr10 21826356 21826488 + 3 NA intron (NM_022365, intron 8 of 11) FLAM_C|SINE|Alu 177308 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 729-27 chr15 68969840 68970226 + 3 NA intron (NM_001184780, intron 1 of 15) L1M4|LINE|L1 39508 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 607-141 chr7 126190300 126190717 + 3 NA Intergenic L1M3|LINE|L1 867676 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 463-129 chr2 13176169 13176392 + 3 NA Intergenic L1ME2|LINE|L1 -169267 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 700-7 chr10 33587000 33587406 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 185477 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 414-79 chr13 34689552 34689715 + 3 NA Intergenic Intergenic -48948 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 2073 chr8 111264972 111266185 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -29375 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 537-199 chr5 96122921 96123177 + 3 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 43911 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 1239 chr2 22202425 22203202 + 3 NA Intergenic MER53|DNA|hAT -333666 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 499-132 chr2 178929857 178930105 + 3 NA intron (NM_001316745, intron 6 of 11) intron (NM_001316745, intron 6 of 11) 120156 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 392-48 chr11 130485601 130485775 + 3 NA Intergenic Intergenic 36714 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 337-8 chr1 66887973 66888149 + 3 NA intron (NM_024763, intron 4 of 16) MER63B|DNA|hAT-Blackjack 36795 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 500-225 chr5 45449172 45449390 + 3 NA intron (NM_021072, intron 3 of 7) MIR|SINE|MIR 247099 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 275-190 chr2 52983307 52983445 + 3 NA Intergenic L2a|LINE|L2 -280761 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 340-218 chr18 64908042 64908276 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -648104 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 554-66 chr12 129948451 129948755 + 3 NA Intergenic MIR|SINE|MIR -44578 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 244-64 chr12 12591804 12591950 + 3 NA Intergenic Intergenic -19999 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 495-50 chr12 91875653 91875960 + 3 NA Intergenic L1PREC2|LINE|L1 265907 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 559-163 chr6 145890998 145891275 + 3 NA intron (NM_001370328, intron 30 of 31) L2a|LINE|L2 72961 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 637-87 chr4 90202558 90203063 + 3 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -32221 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 1014-7 chr14 45257596 45258388 + 3 NA Intergenic L1M4|LINE|L1 -4790 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 948-27 chr4 42831783 42832236 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -61257 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 852-27 chr2 49075240 49075586 + 3 NA intron (NM_000145, intron 1 of 9) L1ME3Cz|LINE|L1 15810 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 392-288 chr6 139725273 139725432 + 3 NA Intergenic L2|LINE|L2 -45721 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 557-100 chr2 103693822 103694112 + 3 NA Intergenic L1PA10|LINE|L1 -709538 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 718-2 chr1 66173416 66173790 + 3 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -122885 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 492-52 chr12 3562478 3562685 + 3 NA intron (NM_019854, intron 4 of 9) MER63A|DNA|hAT-Blackjack -69762 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 480-168 chr2 229752901 229753091 + 3 NA Intergenic MIR3|SINE|MIR -38441 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 766-14 chr12 39148111 39148558 + 3 NA Intergenic L1MA2|LINE|L1 -242743 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 618-144 chrX 86424043 86424264 + 3 NA intron (NM_001139515, intron 2 of 11) L1MA1|LINE|L1 161185 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 487-125 chr19 46552428 46552732 + 3 NA intron (NM_001370550, intron 1 of 2) L1MB7|LINE|L1 48336 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 366-211 chr2 113833282 113833447 + 3 NA intron (NR_110174, intron 3 of 4) L1ME4b|LINE|L1 -56570 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 551-8 chr1 110867003 110867232 + 3 NA Intergenic L1PA15|LINE|L1 -4082 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 277-311 chr5 27745866 27746038 + 3 NA Intergenic L1PA17|LINE|L1 273660 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 291-347 chr5 51974827 51974976 + 3 NA Intergenic MER70B|LTR|ERVL -33130 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 990-11 chr17 78953089 78953637 + 3 NA Intergenic AluSx|SINE|Alu 26560 NM_005567 3959 Hs.514535 NM_005567 ENSG00000108679 LGALS3BP 90K|BTBD17B|CyCAP|M2BP|MAC-2-BP|TANGO10B|gp90 galectin 3 binding protein protein-coding 286-174 chr18 41896092 41896279 + 3 NA Intergenic LTR23|LTR|ERV1 -59049 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 535-25 chr10 22914111 22914391 + 3 NA Intergenic AluJo|SINE|Alu -13773 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 532-22 chr10 68882276 68882456 + 3 NA intron (NM_001130160, intron 2 of 2) intron (NM_001130160, intron 2 of 2) -18949 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 559-38 chr12 128509672 128510068 + 3 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 215778 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 511-249 chr7 87273016 87273284 + 3 NA Intergenic L1MA4A|LINE|L1 -52563 NR_138030 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 699-95 chr6 155835387 155835747 + 3 NA Intergenic Charlie15b|DNA|hAT-Charlie -111230 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 235-210 chr21 29020188 29020280 + 3 NA promoter-TSS (NM_016940) promoter-TSS (NM_016940) -863 NM_001320724 10069 Hs.713123 NM_016940 ENSG00000156253 RWDD2B C21orf6|GL011 RWD domain containing 2B protein-coding 541-44 chr12 34411796 34412070 + 3 NA Intergenic ALR/Alpha|Satellite|centr 389437 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 558-107 chr2 191789414 191789654 + 3 NA Intergenic Intergenic -3306 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 491-137 chr2 204219000 204219239 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 282371 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 296-223 chr2 65711979 65712142 + 3 NA Intergenic Intergenic -279461 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 458-196 chr4 172692453 172692670 + 3 NA intron (NR_125894, intron 1 of 2) L1M5|LINE|L1 -3644 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 503-159 chr2 146088591 146088934 + 3 NA Intergenic Intergenic -498295 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 396-178 chr2 145149622 145149797 + 3 NA Intergenic L1ME1|LINE|L1 481742 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 361-160 chr16 13976434 13976711 + 3 NA Intergenic Intergenic 39446 NR_110909 101927311 NR_110909 ENSG00000262097 LINC02185 - long intergenic non-protein coding RNA 2185 ncRNA 493-216 chr4 116881 117123 + 3 NA Intergenic Intergenic -7474 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 414-28 chr10 67844149 67844390 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -6081 NM_021800 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 569-74 chr18 5233715 5233909 + 3 NA Intergenic L1ME3E|LINE|L1 4217 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 430-104 chr16 26332227 26332418 + 3 NA Intergenic L1MC2|LINE|L1 307085 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 444-22 chr10 60176932 60177173 + 3 NA intron (NM_001204403, intron 19 of 43) L2c|LINE|L2 -36036 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 194-53 chr14 44765587 44765666 + 3 NA intron (NR_146457, intron 4 of 4) intron (NR_146457, intron 4 of 4) 33500 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 611-54 chr16 62994570 62994861 + 3 NA Intergenic L1PA3|LINE|L1 -958277 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 492-246 chr7 120162311 120162620 + 3 NA Intergenic L1MC3|LINE|L1 -110710 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 474-137 chr2 72575330 72575579 + 3 NA intron (NR_135774, intron 7 of 19) intron (NR_135774, intron 7 of 19) 250579 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 684-68 chr22 27274845 27275261 + 3 NA Intergenic Intergenic -35598 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 646-15 chr10 21831179 21831481 + 3 NA intron (NM_022365, intron 8 of 11) L1MB4|LINE|L1 172400 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 606-51 chr14 51095778 51096040 + 3 NA promoter-TSS (NM_052978) promoter-TSS (NM_052978) -205 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 523-266 chr8 77614081 77614379 + 3 NA Intergenic Intergenic 163533 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 453-182 chr4 69517618 69517818 + 3 NA intron (NM_001297616, intron 1 of 6) intron (NM_001297616, intron 1 of 6) 8296 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 310-189 chr17 69897731 69897919 + 3 NA intron (NR_109971, intron 5 of 5) MLT1E1A|LTR|ERVL-MaLR -63882 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 818-50 chr5 107591150 107591563 + 3 NA intron (NM_001962, intron 1 of 4) MER102c|DNA|hAT-Charlie 79581 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 647-56 chr20 42255195 42255702 + 3 NA intron (NM_007050, intron 13 of 30) intron (NM_007050, intron 13 of 30) -430035 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 527-272 chr8 131521949 131522324 + 3 NA Intergenic Intergenic -381957 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 491-180 chr4 36325510 36325842 + 3 NA intron (NM_001170700, intron 8 of 9) intron (NM_001170700, intron 8 of 9) 44060 NM_001170700 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 358-335 chr4 69548539 69548706 + 3 NA Intergenic Intergenic -22608 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 372-385 chr5 9724389 9724599 + 3 NA intron (NR_027112, intron 5 of 12) intron (NR_027112, intron 5 of 12) -94143 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 473-75 chr14 28311705 28311891 + 3 NA Intergenic Intergenic 453521 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 638-69 chr2 101074839 101075180 + 3 NA intron (NM_001102426, intron 2 of 19) L1MC5a|LINE|L1 72720 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 962-4 chr10 37980010 37980518 + 3 NA Intergenic Intergenic -3617 NM_001329657 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 680-77 chr22 28413493 28413948 + 3 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -46149 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 635-35 chr15 85060503 85060742 + 3 NA intron (NM_173454, intron 1 of 20) MER2|DNA|TcMar-Tigger 78648 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 303-202 chr2 51026685 51026839 + 3 NA intron (NM_001135659, intron 2 of 23) intron (NM_001135659, intron 2 of 23) 5370 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 783-75 chr8 43512430 43512746 + 3 NA Intergenic Intergenic 220146 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 779-18 chr12 116015825 116016188 + 3 NA intron (NM_015335, intron 7 of 30) intron (NM_015335, intron 7 of 30) 132648 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 403-77 chr12 46306833 46307011 + 3 NA Intergenic L1MB3|LINE|L1 -37879 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 538-57 chr12 115184082 115184512 + 3 NA Intergenic L1MA9|LINE|L1 -500122 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 726-12 chr11 115528795 115529257 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -24611 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 430-101 chr15 100878947 100879132 + 3 NA promoter-TSS (NM_001293815) promoter-TSS (NM_001293815) -792 NM_001293815 220 Hs.459538 NM_000693 ENSG00000184254 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family member A3 protein-coding 587-42 chr14 30792750 30793108 + 3 NA Intergenic L1ME3B|LINE|L1 -81606 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 496-232 chr6 40567638 40568040 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 19525 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 656-26 chr10 121004024 121004526 + 3 NA Intergenic L1PA15-16|LINE|L1 152913 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 444-193 chr5 36313242 36313509 + 3 NA Intergenic Intergenic -11473 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 434-153 chr2 123001801 123002001 + 3 NA Intergenic Intergenic 71580 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 358-356 chr5 3552117 3552359 + 3 NA Intergenic L1PA11|LINE|L1 -16144 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 449-261 chr7 113371100 113371270 + 3 NA Intergenic Intergenic -252603 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 331-271 chr2 79526623 79526836 + 3 NA intron (NM_001282598, intron 1 of 17) L1MB7|LINE|L1 3546 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 401-113 chr15 98724106 98724286 + 3 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -60230 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 552-206 chr8 83162805 83163053 + 3 NA Intergenic Intergenic -240829 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 680-26 chr12 15438583 15438940 + 3 NA intron (NM_030667, intron 1 of 26) L1PA16|LINE|L1 -107850 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 430-98 chr15 71270440 71270654 + 3 NA intron (NM_024817, intron 5 of 16) MIR|SINE|MIR -81488 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 413-183 chr3 24064336 24064525 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 38817 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 549-206 chr8 46316870 46317196 + 3 NA Intergenic ALR/Alpha|Satellite|centr 300610 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 701-6 chr10 5182384 5182744 + 3 NA intron (NR_027916, intron 1 of 7) LTR25-int|LTR|ERV1 2623 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 730-33 chr2 128718756 128719232 + 3 NA Intergenic AluSx1|SINE|Alu -145606 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 922-30 chr5 164327588 164328110 + 3 NA Intergenic MER11A|LTR|ERVK 139553 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 481-266 chr6 93076418 93076689 + 3 NA Intergenic Intergenic 343006 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 827-8 chr11 131053467 131053947 + 3 NA Intergenic Intergenic -137220 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 686-38 chr2 3990610 3990987 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 16637 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 487-301 chr8 140121571 140121818 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -21159 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 410-147 chr2 149443328 149443490 + 3 NA intron (NM_194317, intron 2 of 4) intron (NM_194317, intron 2 of 4) 112822 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 429-149 chr2 62725165 62725339 + 3 NA intron (NM_001142615, intron 2 of 22) L1PA13|LINE|L1 18355 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 507-7 chr1 68260520 68260942 + 3 NA Intergenic Intergenic -28185 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 403-97 chr14 55935439 55935667 + 3 NA Intergenic Intergenic -138879 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 1109-11 chr9 123702883 123703567 + 3 NA intron (NM_001352968, intron 4 of 18) AluSz|SINE|Alu -217603 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 705-17 chr11 110916695 110917121 + 3 NA Intergenic Intergenic 180410 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 291-326 chr4 98910221 98910363 + 3 NA intron (NM_001331017, intron 1 of 7) intron (NM_001331017, intron 1 of 7) 18841 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 720-77 chr6 43207817 43208156 + 3 NA intron (NM_015089, intron 26 of 40) L1MEd|LINE|L1 21495 NM_006443 10591 Hs.109752 NM_006443 ENSG00000112667 DNPH1 C6orf108|RCL|dJ330M21.3 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 protein-coding 1013-22 chr9 72859442 72859980 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 14398 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 411-305 chr9 25108318 25108536 + 3 NA Intergenic Intergenic -562530 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 835-2 chr1 60652958 60653558 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -30573 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 398-219 chr3 131913704 131913938 + 3 NA intron (NM_001289112, intron 1 of 15) MIR|SINE|MIR 72110 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 668-32 chr14 63823837 63824156 + 3 NA Intergenic L1MA2|LINE|L1 -28969 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 379-263 chr5 54705248 54705414 + 3 NA intron (NR_104658, intron 1 of 2) LTR67B|LTR|ERVL -2007 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 403-190 chr3 3548188 3548441 + 3 NA Intergenic L1MC|LINE|L1 -251117 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 412-177 chr2 225195071 225195341 + 3 NA Intergenic Intergenic -152738 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 1000-27 chr8 126227300 126227681 + 3 NA Intergenic LTR101_Mam|LTR|ERVL -98005 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 367-126 chr14 71234657 71234896 + 3 NA Intergenic Intergenic -85700 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 415-40 chr10 123474444 123474665 + 3 NA Intergenic Intergenic -191801 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 681-35 chr19 36643120 36643438 + 3 NA intron (NM_001297623, intron 4 of 4) L1ME3A|LINE|L1 23558 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 386-253 chr4 17415575 17415793 + 3 NA Intergenic L1MEi|LINE|L1 -94802 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 611-75 chr2 49479845 49480126 + 3 NA Intergenic L1MC|LINE|L1 -325458 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 313-165 chr15 46822975 46823193 + 3 NA Intergenic L1MA1|LINE|L1 -361005 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 393-366 chr8 127056327 127056519 + 3 NA Intergenic L1ME3D|LINE|L1 -23451 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 673-123 chr8 126037912 126038254 + 3 NA Intergenic Intergenic -86886 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 539-87 chr16 60118058 60118459 + 3 NA Intergenic L1MEf|LINE|L1 241535 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 655-130 chr8 127557261 127557624 + 3 NA Intergenic MIRc|SINE|MIR -75303 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 402-201 chr22 47478624 47478865 + 3 NA intron (NR_109967, intron 1 of 2) L1MB7|LINE|L1 8367 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 464-111 chr2 31543678 31543968 + 3 NA intron (NM_000348, intron 1 of 4) L1MB3|LINE|L1 37115 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 471-246 chr7 18246130 18246314 + 3 NA intron (NM_001321872, intron 2 of 11) L2a|LINE|L2 -43870 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 1046-8 chr2 17001995 17002587 + 3 NA Intergenic Intergenic -336457 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 457-76 chr15 96809213 96809451 + 3 NA Intergenic Intergenic 25897 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 712-84 chr6 65232085 65232468 + 3 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -69142 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 443-279 chr7 56438443 56438629 + 3 NA intron (NR_029420, intron 1 of 5) L1MA3|LINE|L1 9839 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 361-151 chr15 27626755 27626996 + 3 NA Intergenic Intergenic -465556 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 450-143 chr2 97729092 97729369 + 3 NA intron (NM_001079, intron 4 of 13) MIR|SINE|MIR -5176 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 355-12 chr1 92084990 92085182 + 3 NA intron (NM_183242, intron 1 of 8) intron (NM_183242, intron 1 of 8) 4741 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 488-54 chr11 100528753 100528945 + 3 NA Intergenic L1PA13|LINE|L1 -158439 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 465-127 chr2 56219337 56219609 + 3 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -33703 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 602-91 chr4 22872767 22873074 + 3 NA Intergenic Intergenic 158831 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 223-209 chr3 68034364 68034452 + 3 NA intron (NM_001252216, intron 2 of 4) MIR|SINE|MIR 30161 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 581-26 chr11 44995848 44996187 + 3 NA Intergenic Intergenic 22115 NR_026681 221122 Hs.551656 NR_026681 ENSG00000254654 LINC02685 - long intergenic non-protein coding RNA 2685 ncRNA 502-158 chr20 54397606 54397829 + 3 NA Intergenic Intergenic -77876 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 1022-15 chr22 34185302 34185865 + 3 NA Intergenic L1M7|LINE|L1 -262695 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 400-319 chr7 31008909 31009155 + 3 NA Intergenic HAL1|LINE|L1 -43276 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 308-17 chr1 80446449 80446615 + 3 NA Intergenic Intergenic -89223 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 307-40 chr10 16371417 16371551 + 3 NA Intergenic Intergenic -65459 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 414-313 chr7 97273712 97273970 + 3 NA Intergenic HERVL74-int|LTR|ERVL 157248 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 281-22 chr1 193962733 193962921 + 3 NA Intergenic Intergenic 658082 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 826-27 chr2 106236497 106237090 + 3 NA Intergenic L1M1|LINE|L1 -42454 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 582-104 chr4 39835129 39835334 + 3 NA intron (NM_001100399, intron 32 of 32) AluSz|SINE|Alu 137095 NM_001312646 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 468-298 chr7 50521939 50522176 + 3 NA intron (NM_001242889, intron 4 of 12) L1MC2|LINE|L1 -9702 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 429-164 chr2 136673309 136673638 + 3 NA Intergenic Intergenic -92072 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 402-90 chr14 82992060 82992344 + 3 NA Intergenic L1ME3|LINE|L1 349570 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 550-13 chr1 187989123 187989489 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 545678 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 623-55 chr2 21743882 21744262 + 3 NA Intergenic Intergenic -33420 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 283-318 chr4 43845410 43845582 + 3 NA Intergenic Intergenic -171365 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 412-126 chr17 77032217 77032411 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -56329 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 399-237 chr5 8410129 8410341 + 3 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 47329 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 649-45 chr2 48399320 48399590 + 3 NA Intergenic Intergenic -41311 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 314-442 chr4 166835899 166836109 + 3 NA intron (NM_001040159, intron 6 of 10) AluSp|SINE|Alu 398422 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 417-263 chr7 53095201 53095422 + 3 NA Intergenic Intergenic 59678 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 437-22 chr10 57308427 57308657 + 3 NA Intergenic Intergenic -3983 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 940-20 chr3 28214138 28214640 + 3 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -27230 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 428-83 chr16 35278264 35278462 + 3 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 82604 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 730-43 chr22 43729607 43729965 + 3 NA intron (NM_198856, intron 6 of 29) HAL1b|LINE|L1 82519 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 825-5 chr10 107125585 107126141 + 3 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 38843 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 561-159 chr5 42722882 42723226 + 3 NA Intergenic LTR87|LTR|ERVL? -33764 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 903-27 chr4 63676660 63677265 + 3 NA Intergenic L1MC4|LINE|L1 732488 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 415-195 chr4 45050311 45050517 + 3 NA Intergenic Intergenic -323780 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 491-59 chr13 55279100 55279323 + 3 NA Intergenic L1MA5A|LINE|L1 104757 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 1112-3 chr1 247185469 247186267 + 3 NA Intergenic Intergenic -13851 NM_001297567 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 409-32 chr10 94030455 94030611 + 3 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 36602 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 543-69 chr12 128680256 128680445 + 3 NA intron (NM_001136103, intron 5 of 8) MIRb|SINE|MIR 143608 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 542-37 chr11 107199230 107199530 + 3 NA Intergenic Intergenic -180904 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 659-70 chr3 70463445 70463801 + 3 NA Intergenic Intergenic -150985 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 733-12 chr11 122298315 122298681 + 3 NA intron (NR_137179, intron 1 of 4) MSTB-int|LTR|ERVL-MaLR 10989 NR_137193 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 440-248 chr8 81346099 81346278 + 3 NA Intergenic L1MB7|LINE|L1 65652 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 461-285 chr9 26901746 26902048 + 3 NA Intergenic L1MC5a|LINE|L1 -9069 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 606-50 chr14 43196019 43196422 + 3 NA Intergenic L1PA13|LINE|L1 1311063 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 518-193 chr4 30385503 30385694 + 3 NA Intergenic (AATAAC)n|Simple_repeat|Simple_repeat -334771 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 1097-13 chr5 8319969 8320380 + 3 NA Intergenic Intergenic 137390 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 451-211 chr7 25331400 25331677 + 3 NA Intergenic Intergenic -103052 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 1192-7 chr5 147212 148013 + 3 NA intron (NM_052909, intron 6 of 19) intron (NM_052909, intron 6 of 19) -43883 NM_001080478 389257 Hs.103142 NM_001080478 ENSG00000185028 LRRC14B - leucine rich repeat containing 14B protein-coding 139-56 chr3 140555367 140555434 + 3 NA intron (NM_022131, intron 10 of 16) intron (NM_022131, intron 10 of 16) -46611 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 790-5 chr10 48990533 48991021 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -5190 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 447-208 chr5 30513498 30513690 + 3 NA Intergenic L2c|LINE|L2 633034 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 619-97 chr4 174535934 174536250 + 3 NA Intergenic Intergenic -13194 NM_001145816 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 471-43 chr11 39167211 39167539 + 3 NA Intergenic L1MEg|LINE|L1 518517 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 1068-3 chr12 37908281 37908919 + 3 NA Intergenic ALR/Alpha|Satellite|centr -408174 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 397-171 chr2 147869530 147869662 + 3 NA intron (NM_001278579, intron 2 of 11) intron (NM_001278579, intron 2 of 11) 24567 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 403-266 chr6 40248809 40249001 + 3 NA Intergenic MER3|DNA|hAT-Charlie 107101 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 1277-2 chr19 58179697 58180529 + 3 NA Intergenic MER46C|DNA|TcMar-Tigger -2876 NM_001278734 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 355-60 chr10 81752683 81752846 + 3 NA Intergenic Intergenic -122430 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 773-2 chr1 157780818 157781218 + 3 NA Intergenic Intergenic -3886 NR_125358 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 442-283 chr8 51965870 51966097 + 3 NA Intergenic L1M4|LINE|L1 -66797 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 539-17 chr1 186636412 186636684 + 3 NA Intergenic MamRep605|LTR?|LTR? 43875 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 821-38 chr3 181996173 181996625 + 3 NA intron (NR_104146, intron 5 of 7) MIR|SINE|MIR 44035 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 631-77 chr20 55251398 55251766 + 3 NA Intergenic Intergenic -171461 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 439-118 chr19 34653997 34654336 + 3 NA intron (NR_027620, intron 1 of 3) L1MA10|LINE|L1 8293 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 536-217 chr7 54121573 54121889 + 3 NA Intergenic Intergenic -208966 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 504-107 chr18 34136462 34136760 + 3 NA intron (NM_001353232, intron 1 of 9) L1MB8|LINE|L1 85859 NM_001282527 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 347-143 chr15 24910126 24910268 + 3 NA intron (NM_001349456, intron 2 of 12) MLT1A1-int|LTR|ERVL-MaLR -44696 NM_001349463 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 436-34 chr10 69606816 69607024 + 3 NA Intergenic L1MD1|LINE|L1 -23327 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 480-96 chr16 26764408 26764622 + 3 NA Intergenic MLT2A2|LTR|ERVL -302412 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 490-214 chr5 15433774 15434081 + 3 NA Intergenic L1ME1|LINE|L1 -66253 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 500-120 chr19 44195181 44195481 + 3 NA Intergenic MER65-int|LTR|ERV1 -17197 NM_001289171 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 871-10 chr18 4940668 4941292 + 3 NA Intergenic L1M5|LINE|L1 -140202 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 631-131 chr9 74718509 74718761 + 3 NA Intergenic Intergenic 103101 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 217-211 chr21 21062875 21062967 + 3 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 64512 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 859-7 chr12 33190319 33190841 + 3 NA Intergenic L1PB4|LINE|L1 249239 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 505-234 chr5 12125147 12125410 + 3 NA Intergenic Intergenic -220832 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 485-8 chr1 55793247 55793511 + 3 NA Intergenic Intergenic 151584 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 546-7 chr1 150431908 150432168 + 3 NA intron (NM_015203, intron 2 of 10) L1MB3|LINE|L1 -55381 NM_001271895 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 368-328 chr4 47129108 47129347 + 3 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 97660 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 528-238 chr7 54273319 54273621 + 3 NA Intergenic L1M3b|LINE|L1 -57227 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 580-154 chr5 96523850 96524178 + 3 NA intron (NR_130776, intron 4 of 4) MLT1J|LTR|ERVL-MaLR -90766 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 333-254 chr2 104989739 104989863 + 3 NA intron (NR_110603, intron 1 of 2) L2a|LINE|L2 -48268 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 491-248 chr7 61916815 61917036 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1387131 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 544-65 chr14 62795191 62795531 + 3 NA intron (NM_139318, intron 9 of 10) MER2|DNA|TcMar-Tigger 250097 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 549-162 chr5 31947729 31948067 + 3 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -11739 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 550-57 chr12 45760220 45760591 + 3 NA intron (NM_152641, intron 3 of 20) intron (NM_152641, intron 3 of 20) 30696 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 511-150 chr20 53452899 53453084 + 3 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -99779 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 365-63 chr10 109572043 109572219 + 3 NA Intergenic L1MA8|LINE|L1 351115 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 424-2 chr1 28042260 28042567 + 3 NA intron (NM_001282562, intron 3 of 16) intron (NM_001282562, intron 3 of 16) 46197 NM_001282560 2140 Hs.185774 NM_001990 ENSG00000158161 EYA3 - EYA transcriptional coactivator and phosphatase 3 protein-coding 466-275 chr8 126053855 126054062 + 3 NA Intergenic L1MC2|LINE|L1 -102761 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 422-155 chr2 126876331 126876532 + 3 NA Intergenic MIRb|SINE|MIR -22459 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 363-307 chr3 191203634 191203796 + 3 NA intron (NM_198184, intron 1 of 4) intron (NM_198184, intron 1 of 4) 4474 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 644-12 chr12 17313005 17313458 + 3 NA Intergenic Intergenic 275847 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 599 chr1 37015328 37015664 + 3 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 19019 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 787-14 chr17 15069665 15070181 + 3 NA Intergenic Intergenic 36264 NR_103559 94151 Hs.98684 NR_103559 CDRT8 - CMT1A duplicated region transcript 8 ncRNA 451-99 chr18 10087158 10087331 + 3 NA Intergenic L2c|LINE|L2 173228 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 379-220 chr3 121562372 121562550 + 3 NA Intergenic Intergenic -5488 NM_001012659 503582 Hs.224976 NM_001012659 ENSG00000186103 ARGFX - arginine-fifty homeobox protein-coding 635-16 chr10 95072089 95072386 + 3 NA Intergenic L1MC2|LINE|L1 -2740 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 387-41 chr10 66650202 66650384 + 3 NA intron (NM_001127384, intron 9 of 17) L1MA8|LINE|L1 -275743 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 380-394 chr8 79868268 79868427 + 3 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 3390 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 793-7 chr10 109709153 109709571 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 213884 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 406-126 chr19 12252183 12252360 + 3 NA Intergenic L1MCa|LINE|L1 42341 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 372-5 chr1 31808816 31808972 + 3 NA intron (NM_001281988, intron 1 of 14) intron (NM_001281988, intron 1 of 14) 7157 NM_001281988 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 334-350 chr3 78019589 78019732 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 29303 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 644-26 chr17 10261177 10261451 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -62708 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 461-164 chr22 34649745 34649963 + 3 NA Intergenic MIR|SINE|MIR 348062 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 527-86 chr14 59700490 59700763 + 3 NA intron (NM_021136, intron 3 of 8) L1MB7|LINE|L1 -53606 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 530-80 chr14 83680175 83680509 + 3 NA Intergenic Intergenic 1037710 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 413-170 chr20 52054548 52054787 + 3 NA Intergenic AluSz|SINE|Alu 50817 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 635-67 chr3 122145599 122145945 + 3 NA Intergenic AluJr|SINE|Alu -37896 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 509-63 chr12 130527531 130527751 + 3 NA intron (NM_001351226, intron 2 of 21) L1PA10|LINE|L1 100815 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 568-209 chrX 80610707 80611142 + 3 NA Intergenic L1PA15|LINE|L1 190477 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 247-423 chr9 1894729 1894843 + 3 NA Intergenic Intergenic -120561 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 589-121 chr5 51965090 51965349 + 3 NA Intergenic Intergenic -42812 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 524-87 chr17 10990760 10991048 + 3 NA Intergenic Intergenic -152817 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 320-507 chr7 26568979 26569204 + 3 NA Intergenic L1ME3D|LINE|L1 -30266 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 736-17 chr11 104379714 104380087 + 3 NA Intergenic L1MC3|LINE|L1 -215753 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 475-75 chr14 39536147 39536357 + 3 NA Intergenic L1PREC2|LINE|L1 -103752 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 423-213 chr5 12229728 12229998 + 3 NA Intergenic MADE2|DNA|TcMar-Mariner -325417 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 230-121 chr14 84148459 84148559 + 3 NA Intergenic Intergenic -1123423 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 472-328 chr8 124856559 124856907 + 3 NA Intergenic Intergenic -34675 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 688-10 chr10 5136086 5136630 + 3 NA Intergenic AluSz|SINE|Alu 41944 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 415-84 chr15 98814132 98814340 + 3 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 29810 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 693-96 chr8 43583797 43584201 + 3 NA Intergenic ALR/Alpha|Satellite|centr 291557 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 455-148 chr20 40163208 40163366 + 3 NA Intergenic MIRb|SINE|MIR 158826 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 547-237 chr8 64226096 64226457 + 3 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 142282 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 499-126 chr2 113012540 113012730 + 3 NA Intergenic L1MEi|LINE|L1 7176 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 463-87 chr14 41528481 41528750 + 3 NA Intergenic Intergenic -78241 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 597-43 chr12 133172098 133172386 + 3 NA Intergenic L1PB4|LINE|L1 -9253 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 307-409 chr5 169201304 169201441 + 3 NA intron (NM_003062, intron 3 of 35) intron (NM_003062, intron 3 of 35) 62322 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 459-56 chr11 121506510 121506744 + 3 NA intron (NM_003105, intron 6 of 47) THE1B|LTR|ERVL-MaLR 54313 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 353-378 chr4 81136527 81136682 + 3 NA intron (NM_006259, intron 13 of 18) intron (NM_006259, intron 13 of 18) 17553 NM_001282482 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 480-43 chr11 40143644 40143839 + 3 NA intron (NM_020929, intron 3 of 4) L2a|LINE|L2 149389 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1036-3 chr1 247663725 247664253 + 3 NA Intergenic L1MA8|LINE|L1 9052 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 507-81 chr14 53750796 53751047 + 3 NA Intergenic HAL1b|LINE|L1 197563 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 435-206 chr5 125953647 125953850 + 3 NA Intergenic L1ME3F|LINE|L1 -225829 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 595-98 chr2 217140096 217140448 + 3 NA Intergenic L1MB8|LINE|L1 -142461 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 299-417 chr7 50568498 50568629 + 3 NA Intergenic L1MC|LINE|L1 -3158 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 390-271 chr4 98064599 98064819 + 3 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 78767 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 417-299 chr9 7030639 7030880 + 3 NA intron (NR_148680, intron 16 of 21) intron (NR_148680, intron 16 of 21) 273409 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 340-343 chr22 48138132 48138310 + 3 NA Intergenic Intergenic -136143 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 295-487 chr8 137800399 137800554 + 3 NA Intergenic Intergenic 283069 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 296-65 chr10 115953206 115953357 + 3 NA Intergenic Intergenic 241508 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 1579-2 chr5 9023278 9024171 + 3 NA Intergenic L1PA16|LINE|L1 30171 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 659-72 chr3 89655614 89656063 + 3 NA Intergenic L1PREC2|LINE|L1 548217 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 323-17 chr1 103978735 103978925 + 3 NA Intergenic L2|LINE|L2 -94193 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 616-129 chr5 22284817 22285041 + 3 NA intron (NM_001364104, intron 2 of 13) GA-rich|Low_complexity|Low_complexity -71079 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 490-224 chr5 111813626 111813839 + 3 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -55514 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 318-494 chr6 154720121 154720306 + 3 NA Intergenic L1MEd|LINE|L1 -13165 NM_001286199 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 456-226 chr4 84044470 84044626 + 3 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 254621 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 904-33 chr5 111035644 111036022 + 3 NA Intergenic L1PA4|LINE|L1 -34247 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 532-250 chr7 63469519 63469828 + 3 NA Intergenic L1PA2|LINE|L1 -70632 NR_028349 100287834 Hs.742597 NR_028349 LOC100287834 - uncharacterized LOC100287834 ncRNA 358-270 chr21 18100342 18100484 + 3 NA intron (NM_001204178, intron 2 of 5) HAL1ME|LINE|L1 -144420 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 374-229 chr20 60001956 60002124 + 3 NA intron (NR_145482, intron 15 of 17) L1MC4a|LINE|L1 5666 NM_001348204 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 452-254 chr7 88052032 88052239 + 3 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 117884 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 511-56 chr12 132988563 132988776 + 3 NA intron (NM_001330514, intron 2 of 4) L1MCa|LINE|L1 2302 NM_019591 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 737-48 chr20 37621242 37621571 + 3 NA intron (NR_047461, intron 2 of 2) AluJb|SINE|Alu 1713 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 585-40 chr14 62587272 62587622 + 3 NA Intergenic L1ME2z|LINE|L1 -447474 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 845-12 chr18 4248122 4248483 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -16300 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 294-61 chr11 68745107 68745231 + 3 NA intron (NM_001039656, intron 3 of 5) intron (NM_001039656, intron 3 of 5) 6351 NM_001039656 9633 Hs.145932 NM_004923 ENSG00000132749 TESMIN CXCDC2|MTL5|MTLT testis expressed metallothionein like protein protein-coding 540-94 chr16 82599950 82600175 + 3 NA Intergenic Intergenic -26907 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 408-142 chr18 40000014 40000235 + 3 NA Intergenic Intergenic -66162 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 559-42 chr13 65547475 65547724 + 3 NA Intergenic L1PA13|LINE|L1 -318448 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 407-128 chr19 53224791 53225058 + 3 NA Intergenic Intergenic 11976 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 444-190 chr5 22356506 22356747 + 3 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -142776 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 490-77 chr13 28884804 28885015 + 3 NA intron (NM_001366651, intron 2 of 14) intron (NM_001366651, intron 2 of 14) 64570 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 441-73 chr14 44829368 44829585 + 3 NA Intergenic Intergenic -30350 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 530-56 chr12 34591390 34591684 + 3 NA Intergenic ALR/Alpha|Satellite|centr 569041 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 703-100 chr8 135180066 135180407 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -53895 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 556-105 chr2 103003515 103003811 + 3 NA Intergenic Intergenic -19234 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 460-148 chr2 125230562 125230771 + 3 NA Intergenic L1MA4A|LINE|L1 887319 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 887-23 chr5 11030275 11030845 + 3 NA intron (NM_001288715, intron 15 of 20) L1M4c|LINE|L1 -269326 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 375-35 chr10 17183252 17183404 + 3 NA intron (NM_004412, intron 1 of 10) HAL1b|LINE|L1 18344 NM_001321006 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 516-92 chr16 35337797 35338094 + 3 NA Intergenic Intergenic -25471 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 369-195 chr2 50592278 50592414 + 3 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 103916 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 284 chr1 14205247 14205408 + 3 NA Intergenic Intergenic 214646 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 478-54 chr12 9804229 9804496 + 3 NA intron (NR_159359, intron 1 of 5) L1M4b|LINE|L1 4310 NR_159359 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 459-4 chr1 34285485 34285669 + 3 NA Intergenic Intergenic 108670 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 636-39 chr13 61866219 61866603 + 3 NA Intergenic L1M2|LINE|L1 163137 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 592-111 chr3 84430553 84430767 + 3 NA Intergenic Intergenic 438915 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 506-269 chr7 54284268 54284601 + 3 NA Intergenic Intergenic -46263 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 521-28 chr10 48392269 48392526 + 3 NA intron (NM_001323302, intron 3 of 13) MER21A|LTR|ERVL -9215 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 466-216 chr5 148921734 148922008 + 3 NA Intergenic Intergenic 95278 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 400-232 chr3 156112747 156112980 + 3 NA Intergenic Intergenic -7685 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 532-125 chr2 83466649 83466934 + 3 NA Intergenic Intergenic -56023 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 578-105 chr21 29569044 29569376 + 3 NA intron (NM_000830, intron 14 of 16) intron (NM_000830, intron 14 of 16) -26830 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 503-46 chr11 13547386 13547696 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -51366 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 405-42 chr11 38609376 38609554 + 3 NA Intergenic Intergenic 36891 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 294-42 chr10 64722383 64722552 + 3 NA Intergenic Intergenic -103061 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 656-47 chr18 7858896 7859194 + 3 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 291729 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 514-299 chr9 94628744 94629055 + 3 NA intron (NM_000507, intron 1 of 6) intron (NM_000507, intron 1 of 6) 10619 NM_000507 2203 Hs.494496 NM_000507 ENSG00000165140 FBP1 FBP fructose-bisphosphatase 1 protein-coding 587-168 chr8 119677752 119678059 + 3 NA Intergenic Intergenic -4515 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 554-116 chr2 78548054 78548334 + 3 NA intron (NR_136312, intron 1 of 3) intron (NR_136312, intron 1 of 3) 2663 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 637-71 chr20 10925912 10926293 + 3 NA Intergenic Intergenic -16830 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 264-383 chr7 33612430 33612583 + 3 NA intron (NM_001348041, intron 22 of 22) intron (NM_001348041, intron 22 of 22) -292409 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 429-189 chr3 43335510 43335741 + 3 NA intron (NM_001100594, intron 3 of 5) L1MEd|LINE|L1 16337 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 460-236 chr5 27741396 27741667 + 3 NA Intergenic L1M5|LINE|L1 269239 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 451-142 chr3 30889108 30889331 + 3 NA intron (NM_207359, intron 1 of 14) THE1B|LTR|ERVL-MaLR 5442 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 419-285 chr8 37288026 37288204 + 3 NA Intergenic Intergenic 205798 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 323-277 chr2 162846242 162846406 + 3 NA Intergenic L1MEc|LINE|L1 -7557 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 788-19 chr14 82124397 82125019 + 3 NA Intergenic Intergenic -381570 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 298-264 chr20 60771054 60771219 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 206574 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 548-171 chr4 135725719 135726104 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 162182 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 477-257 chr7 33517064 33517320 + 3 NA intron (NM_198428, intron 20 of 22) MIR|SINE|MIR 387628 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 363-124 chr13 85495001 85495191 + 3 NA intron (NR_046989, intron 1 of 3) LTR40b|LTR|ERVL 131493 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 500-145 chr2 117009586 117009872 + 3 NA Intergenic L1ME3F|LINE|L1 -804962 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 531-98 chr2 10335015 10335244 + 3 NA intron (NM_001258357, intron 1 of 4) MLT1F2|LTR|ERVL-MaLR 4966 NM_001258357 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 932-6 chr12 16109793 16110231 + 3 NA Intergenic Intergenic 167673 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 448-189 chr4 106007564 106007717 + 3 NA intron (NR_125928, intron 3 of 3) L1PB1|LINE|L1 14838 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 496-26 chr10 6295636 6295900 + 3 NA Intergenic L1MCb|LINE|L1 -30776 NR_040079 399715 NR_040079 ENSG00000215244 LINC02649 - long intergenic non-protein coding RNA 2649 ncRNA 486-191 chr22 26932467 26932683 + 3 NA Intergenic L1ME5|LINE|L1 29283 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 488-109 chr17 72051002 72051244 + 3 NA intron (NR_110877, intron 1 of 2) L1ME4b|LINE|L1 6611 NR_110877 102723517 Hs.600042 NR_110877 ENSG00000234899 LOC102723517 - uncharacterized LOC102723517 ncRNA 429-191 chr3 54611213 54611429 + 3 NA intron (NM_018398, intron 9 of 37) intron (NM_018398, intron 9 of 37) 28536 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 397-327 chr8 33308156 33308311 + 3 NA Intergenic L1MEc|LINE|L1 164913 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 488-227 chr5 156930862 156931099 + 3 NA intron (NM_001146726, intron 4 of 7) MLT1D|LTR|ERVL-MaLR 32246 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 649-61 chr20 24303813 24304154 + 3 NA Intergenic Intergenic 104216 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 528-53 chr11 87843584 87843893 + 3 NA Intergenic MIRc|SINE|MIR -124327 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 290-94 chr12 624349 624517 + 3 NA intron (NM_016533, intron 1 of 3) L2c|LINE|L2 -6458 NR_122124 100049716 Hs.655804 NR_122124 ENSG00000177406 LOC100049716 - uncharacterized LOC100049716 ncRNA 608-135 chr6 148048680 148048944 + 3 NA Intergenic L1MEd|LINE|L1 -223516 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 919-10 chr2 106003751 106004165 + 3 NA Intergenic L1MB8|LINE|L1 -61730 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 484-41 chr11 99408818 99409085 + 3 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -147194 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 641-67 chr2 180221554 180221998 + 3 NA Intergenic Intergenic -214479 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 598-33 chr12 2674814 2675193 + 3 NA TTS (NR_045725) TTS (NR_045725) -2783 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 461-162 chr21 34010845 34011003 + 3 NA Intergenic L1MC3|LINE|L1 34542 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 817-4 chr1 167844953 167845581 + 3 NA intron (NM_018417, intron 21 of 32) intron (NM_018417, intron 21 of 32) 68867 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 731-62 chr6 70243860 70244374 + 3 NA intron (NM_001851, intron 28 of 37) intron (NM_001851, intron 28 of 37) 39080 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 796-53 chr7 46964519 46964888 + 3 NA Intergenic L1MB5|LINE|L1 -267581 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 764-9 chr10 20255474 20255867 + 3 NA intron (NM_032812, intron 13 of 13) intron (NM_032812, intron 13 of 13) -296300 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 692-45 chr2 31795207 31795639 + 3 NA intron (NR_146994, intron 2 of 3) L1PA5|LINE|L1 8557 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 556-86 chr18 4514687 4515020 + 3 NA Intergenic Intergenic -59546 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 458-263 chr8 112558813 112559099 + 3 NA intron (NM_001363185, intron 22 of 66) intron (NM_001363185, intron 22 of 66) -84537 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 557-98 chr2 63202889 63203190 + 3 NA intron (NR_148705, intron 13 of 16) L1M8|LINE|L1 -83497 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 1249 chr10 31505779 31506502 + 3 NA intron (NM_001323638, intron 8 of 12) L1MA4A|LINE|L1 -106385 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 343-492 chr7 3112286 3112456 + 3 NA Intergenic L1ME2|LINE|L1 46202 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 640-106 chr5 22668645 22669148 + 3 NA intron (NM_004061, intron 1 of 14) (TC)n|Simple_repeat|Simple_repeat 184448 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 567-81 chr2 12862199 12862535 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 125000 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 441-18 chr1 237188271 237188527 + 3 NA intron (NM_001035, intron 1 of 104) MIRb|SINE|MIR 146215 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 644-82 chr6 25206143 25206509 + 3 NA Intergenic AluJb|SINE|Alu 55081 NR_110862 101928663 Hs.561600 NR_110862 LOC101928663 - uncharacterized LOC101928663 ncRNA 402-228 chr4 30492974 30493111 + 3 NA Intergenic L1MC2|LINE|L1 -227327 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 540-87 chr16 13408531 13408838 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 507086 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 441-283 chrX 57548311 57548507 + 3 NA Intergenic L1PBa|LINE|L1 -43427 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 438-261 chr7 86397030 86397251 + 3 NA Intergenic Intergenic -246769 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 428-204 chr4 17341935 17342077 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -21124 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 607-23 chr10 106953379 106953652 + 3 NA intron (NM_001206569, intron 2 of 25) MER2|DNA|TcMar-Tigger 211191 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 533-2 chr1 37154466 37154818 + 3 NA Intergenic Intergenic -6921 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 1076-5 chr11 50365284 50365942 + 3 NA Intergenic ALR/Alpha|Satellite|centr -43534 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 867-40 chr6 78065055 78065642 + 3 NA Intergenic L1MC3|LINE|L1 412309 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 278-466 chrX 83413724 83413846 + 3 NA Intergenic L1MA3|LINE|L1 -94505 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 288-401 chr7 41290749 41290939 + 3 NA Intergenic Intergenic 189240 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 425-2 chr1 34587235 34587407 + 3 NA Intergenic Intergenic 82373 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 596-52 chr12 132922137 132922519 + 3 NA 3' UTR (NM_183238, exon 5 of 5) 3' UTR (NM_183238, exon 5 of 5) 33978 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 321-578 chr8 129749814 129749975 + 3 NA intron (NM_031415, intron 12 of 13) intron (NM_031415, intron 12 of 13) 36730 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 599-125 chr7 31114058 31114410 + 3 NA Intergenic Intergenic 61773 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 228-179 chr2 145100363 145100468 + 3 NA Intergenic Intergenic 432448 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 648-27 chr12 54431817 54432131 + 3 NA intron (NR_120487, intron 3 of 3) intron (NR_120487, intron 3 of 3) 12189 NR_120488 102724050 Hs.670941 NR_120486 ENSG00000258137 LOC102724050 - uncharacterized LOC102724050 ncRNA 452-108 chr17 71233077 71233279 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -30999 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 815-16 chr14 42711609 42712145 + 3 NA Intergenic Intergenic 1105021 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 707-91 chr6 121819937 121820405 + 3 NA Intergenic LTR10A|LTR|ERV1 384525 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 598-155 chr9 118479135 118479434 + 3 NA Intergenic Intergenic -200387 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 373-174 chr19 22049799 22050014 + 3 NA Intergenic BSR/Beta|Satellite|Satellite -2578 NM_001316996 113835 Hs.283900 NM_033468 ENSG00000197134 ZNF257 BMZF-4|BMZF4 zinc finger protein 257 protein-coding 376-347 chr6 63317974 63318113 + 3 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 1934 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 533-75 chr17 48374959 48375276 + 3 NA intron (NM_001075099, intron 2 of 12) intron (NM_001075099, intron 2 of 12) 55097 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 561-181 chr7 51489432 51489684 + 3 NA Intergenic AluSx1|SINE|Alu -96302 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 608-128 chr5 168826132 168826494 + 3 NA intron (NM_003062, intron 6 of 35) intron (NM_003062, intron 6 of 35) -58058 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 507-242 chr8 48989718 48990024 + 3 NA Intergenic L1M4b|LINE|L1 -64465 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 998-3 chr10 33678113 33678648 + 3 NA Intergenic MLT2C1|LTR|ERVL 94300 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 286-147 chr16 12732163 12732316 + 3 NA intron (NM_018340, intron 2 of 3) HAL1|LINE|L1 11918 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 388-353 chr8 129690050 129690320 + 3 NA Intergenic MIR1_Amn|SINE|MIR -9946 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 671-15 chr11 38099387 38099742 + 3 NA Intergenic Intergenic 160963 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 460-140 chr2 73490773 73490968 + 3 NA exon (NM_015120, exon 10 of 23) exon (NM_015120, exon 10 of 23) 33767 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 659-117 chr8 89214499 89214849 + 3 NA Intergenic Intergenic 543037 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 668-27 chr14 44294381 44294828 + 3 NA Intergenic Intergenic 212679 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 477-109 chr16 52285839 52286060 + 3 NA Intergenic L2a|LINE|L2 27385 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 483-30 chr10 85866620 85866832 + 3 NA intron (NM_017551, intron 6 of 15) MIRb|SINE|MIR 288995 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 332-491 chr7 70862444 70862625 + 3 NA Intergenic Intergenic -269610 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 447-250 chr7 68326155 68326405 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 306027 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 616-122 chr4 85962189 85962497 + 3 NA intron (NM_031305, intron 2 of 6) intron (NM_031305, intron 2 of 6) 32327 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 954-35 chr4 22159154 22159789 + 3 NA Intergenic L1PREC2|LINE|L1 180195 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 299-272 chr22 47502742 47502947 + 3 NA Intergenic L1MB8|LINE|L1 -15733 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 520-189 chr3 89530143 89530469 + 3 NA Intergenic Intergenic 422685 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 751-86 chr9 119871225 119871663 + 3 NA Intergenic MIRb|SINE|MIR -63616 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 851-39 chr6 146525008 146525472 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -18593 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 551-142 chr4 136951951 136952182 + 3 NA intron (NR_149105, intron 2 of 3) L1MC3|LINE|L1 -241690 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 443-249 chr5 125905941 125906218 + 3 NA Intergenic Intergenic -273498 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 385-232 chr3 12172092 12172259 + 3 NA intron (NM_133625, intron 10 of 12) MIR3|SINE|MIR -13263 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 652-18 chr10 43564360 43564785 + 3 NA intron (NM_001099283, intron 1 of 1) AluJb|SINE|Alu 3887 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 751-73 chr7 34118417 34118895 + 3 NA intron (NM_133468, intron 14 of 15) MLT2D|LTR|ERVL 213117 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 549-147 chr4 35639103 35639385 + 3 NA Intergenic Intergenic 604695 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 459-50 chr11 50684422 50684599 + 3 NA Intergenic ALR/Alpha|Satellite|centr 275363 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 669-16 chr11 70519805 70520243 + 3 NA intron (NM_133266, intron 2 of 10) AluJo|SINE|Alu -111070 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 690-75 chr4 34514297 34514785 + 3 NA Intergenic LTR50|LTR|ERVL -244794 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 277-140 chr16 60019024 60019183 + 3 NA intron (NR_110917, intron 1 of 3) L1PB4|LINE|L1 163750 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 452-220 chr5 145627984 145628251 + 3 NA Intergenic Intergenic 207225 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 391-111 chr14 70038251 70038438 + 3 NA Intergenic Intergenic 41873 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 343-336 chr3 49594246 49594415 + 3 NA intron (NM_003458, intron 1 of 11) L1MD2|LINE|L1 39853 NM_003458 8927 Hs.194684 NM_003458 ENSG00000164061 BSN ZNF231 bassoon presynaptic cytomatrix protein protein-coding 554-191 chr7 41350472 41350835 + 3 NA Intergenic Intergenic 249049 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 370-366 chr5 22705285 22705481 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 147961 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 659-74 chr3 120751330 120751710 + 3 NA intron (NM_005513, intron 2 of 4) intron (NM_005513, intron 2 of 4) 8776 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 1616-2 chr19 24372369 24373435 + 3 NA Intergenic ALR/Alpha|Satellite|centr -209455 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 300-458 chr8 72364046 72364232 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -112505 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 577-168 chr6 51923670 51923928 + 3 NA intron (NM_138694, intron 37 of 66) intron (NM_138694, intron 37 of 66) 163814 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 409-249 chr5 84712806 84713073 + 3 NA Intergenic L1M4|LINE|L1 -328059 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 799-18 chr16 26282604 26283071 + 3 NA Intergenic MLT2C2|LTR|ERVL 257600 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 584-93 chr22 27005101 27005443 + 3 NA Intergenic MER20B|DNA|hAT-Charlie 55246 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 698-75 chr6 135381273 135381663 + 3 NA intron (NM_017651, intron 22 of 27) intron (NM_017651, intron 22 of 27) 116272 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 467-161 chr21 28596467 28596837 + 3 NA Intergenic Intergenic 57334 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 721-27 chr17 70562674 70562956 + 3 NA Intergenic Intergenic 393280 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 409-123 chr19 37158475 37158725 + 3 NA intron (NM_001288800, intron 2 of 4) L1MC5a|LINE|L1 13836 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 746-23 chr14 51837844 51838154 + 3 NA Intergenic LTR37B|LTR|ERV1 -22613 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 591-88 chr20 40905407 40905730 + 3 NA Intergenic Intergenic -75145 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 471-138 chr2 122518613 122518837 + 3 NA Intergenic Intergenic 554756 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 301-255 chr20 49629103 49629284 + 3 NA Intergenic L1ME3G|LINE|L1 -61056 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 694-114 chr6 145586985 145587296 + 3 NA Intergenic Intergenic 99737 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 774-22 chr13 30201465 30201889 + 3 NA TTS (NM_001014380) TTS (NM_001014380) -48603 NR_138041 102157400 Hs.639879 NR_138041 LINC00384 - long intergenic non-protein coding RNA 384 ncRNA 905-11 chr14 87166585 87167052 + 3 NA Intergenic L2a|LINE|L2 261040 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 569-117 chr3 25353339 25353671 + 3 NA intron (NM_001290300, intron 1 of 7) intron (NM_001290300, intron 1 of 7) 12703 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 403-121 chr16 60543568 60543744 + 3 NA Intergenic Intergenic -183863 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 1205-5 chr17 55095180 55095690 + 3 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -126650 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 402-296 chr6 53675203 53675398 + 3 NA Intergenic Intergenic -9544 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 702-78 chr5 39722121 39722394 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 201826 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 483-185 chr4 51957924 51958192 + 3 NA Intergenic Intergenic 62305 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 457-233 chr7 52724466 52724684 + 3 NA Intergenic Intergenic -311058 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 460-212 chr3 180852621 180852877 + 3 NA intron (NR_109986, intron 1 of 13) L1MEc|LINE|L1 17429 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 615-63 chr2 77331820 77332249 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 190342 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 1117-6 chr20 42597968 42598572 + 3 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -87213 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 531-26 chr10 83752818 83753122 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -75881 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 357-460 chr8 131560242 131560410 + 3 NA Intergenic L1MA3|LINE|L1 -343767 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 889-15 chr15 47754670 47755017 + 3 NA intron (NM_153618, intron 1 of 18) L1MEg|LINE|L1 36354 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 301-364 chr5 107975028 107975139 + 3 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -304146 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 505-191 chr3 37580669 37580973 + 3 NA intron (NM_002207, intron 15 of 27) intron (NM_002207, intron 15 of 27) 128680 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 449-161 chr3 10902914 10903133 + 3 NA intron (NM_014229, intron 6 of 13) MIR|SINE|MIR 86795 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 385-305 chr5 103868225 103868425 + 3 NA Intergenic Intergenic -305536 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 337-293 chr2 207247140 207247319 + 3 NA intron (NR_110283, intron 1 of 3) MIR|SINE|MIR 7087 NR_110283 101927865 Hs.574609 NR_110283 MYOSLID-AS1 - MYOSLID antisense RNA 1 ncRNA 599-15 chr10 71160959 71161237 + 3 NA Intergenic Intergenic -51472 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 433-57 chr12 37929516 37929745 + 3 NA Intergenic ALR/Alpha|Satellite|centr -387144 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 493-107 chr17 55572252 55572496 + 3 NA Intergenic MIR|SINE|MIR 150490 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 230-135 chr16 6114594 6114681 + 3 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 94934 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 388-346 chr8 81389266 81389424 + 3 NA Intergenic Intergenic 58094 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 448-198 chr5 6854006 6854308 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -26236 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 546-184 chr5 18874271 18874517 + 3 NA Intergenic Intergenic 1011878 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 473-53 chr12 13513232 13513464 + 3 NA Intergenic L1MB3|LINE|L1 -136603 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 329-371 chr3 96455132 96455366 + 3 NA Intergenic L1M5|LINE|L1 95285 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 379-137 chr19 28788717 28788949 + 3 NA Intergenic Intergenic -61139 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 526-263 chr9 104360845 104361251 + 3 NA Intergenic Intergenic 90819 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 469-32 chr10 62141597 62141823 + 3 NA Intergenic L1ME3|LINE|L1 92353 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 630-133 chr7 80683794 80684051 + 3 NA Intergenic Intergenic 37269 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 505-208 chr4 8313060 8313248 + 3 NA Intergenic L1MB1|LINE|L1 -7022 NR_149126 105374374 Hs.145224 NR_149125 ENSG00000249145 LINC02517 - long intergenic non-protein coding RNA 2517 ncRNA 430-266 chr6 94996059 94996241 + 3 NA Intergenic L1MA9|LINE|L1 581301 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 579-96 chr22 26265516 26265873 + 3 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 96220 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 530-155 chr21 21293717 21294052 + 3 NA intron (NM_001352592, intron 6 of 18) intron (NM_001352592, intron 6 of 18) 146722 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 615-25 chr12 34546773 34547060 + 3 NA Intergenic ALR/Alpha|Satellite|centr 524420 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 499-288 chrX 14224102 14224344 + 3 NA Intergenic Intergenic -20042 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 421-112 chr18 5139819 5140037 + 3 NA Intergenic Intergenic 57329 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 351-162 chr16 53593910 53594086 + 3 NA Intergenic Intergenic -90694 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 564-210 chr8 142334741 142335095 + 3 NA intron (NM_001291931, intron 2 of 10) L1MEf|LINE|L1 68264 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 566-51 chr14 66179123 66179463 + 3 NA Intergenic L2c|LINE|L2 -307078 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 430-291 chr7 68872674 68872910 + 3 NA Intergenic Intergenic 724832 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 431-150 chr2 176478337 176478573 + 3 NA Intergenic Intergenic 122597 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 603-101 chr22 23552168 23552520 + 3 NA Intergenic (CATC)n|Simple_repeat|Simple_repeat 14242 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 ncRNA 337-348 chr3 38142774 38142990 + 3 NA 3' UTR (NM_001365877, exon 4 of 4) 3' UTR (NM_001365877, exon 4 of 4) 4221 NM_001365876 4615 Hs.82116 NM_002468 ENSG00000172936 MYD88 MYD88D MYD88 innate immune signal transduction adaptor protein-coding 370-198 chr19 6957801 6957959 + 3 NA intron (NR_024075, intron 13 of 15) intron (NR_024075, intron 13 of 15) 32966 NR_024075 326342 Hs.688043 NM_001080498 ENSG00000268758 ADGRE4P EMR4|EMR4P|FIRE|GPR127|PGR16 adhesion G protein-coupled receptor E4, pseudogene pseudo 518-244 chr5 144692873 144693170 + 3 NA Intergenic L1MCa|LINE|L1 487630 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 510-163 chr2 234569703 234569894 + 3 NA Intergenic Intergenic -72717 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 519-138 chr20 56045054 56045359 + 3 NA Intergenic Intergenic -39687 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 424-87 chr16 3859596 3859835 + 3 NA intron (NM_004380, intron 1 of 30) MER21B|LTR|ERVL 20405 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 717-50 chr20 180481 180895 + 3 NA Intergenic L1MA8|LINE|L1 9023 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 637-84 chr4 30402548 30402867 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -317662 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 483-260 chr8 77467828 77468049 + 3 NA intron (NR_125830, intron 2 of 2) intron (NR_125830, intron 2 of 2) 17241 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 273-198 chr19 32450097 32450264 + 3 NA intron (NM_207325, intron 8 of 18) L1MB7|LINE|L1 44055 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like C-mannosyltransferase 3 protein-coding 543-198 chr5 36091597 36091845 + 3 NA Intergenic MER75|DNA|PiggyBac -24839 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 482-147 chr20 42458326 42458650 + 3 NA intron (NM_133170, intron 8 of 31) MIR|SINE|MIR -226995 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 426-165 chr21 16738651 16738833 + 3 NA Intergenic Intergenic 148505 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 556-62 chr14 59035009 59035289 + 3 NA Intergenic MIRb|SINE|MIR -153518 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 603-126 chr4 93935446 93935772 + 3 NA Intergenic L1MA2|LINE|L1 106856 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 790-31 chr22 47994163 47994634 + 3 NA Intergenic Intergenic -279966 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 562-20 chr10 26347094 26347395 + 3 NA Intergenic L1M5|LINE|L1 -91097 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 600-92 chr4 61052936 61053288 + 3 NA Intergenic Intergenic -90544 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 1137 chr10 69794444 69795087 + 3 NA Intergenic Intergenic -7141 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 289-194 chr18 71052027 71052151 + 3 NA Intergenic Intergenic -401135 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 522-2 chr1 65978433 65978650 + 3 NA intron (NM_002600, intron 3 of 16) intron (NM_002600, intron 3 of 16) -14075 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 490-135 chr2 22961500 22961707 + 3 NA Intergenic L2c|LINE|L2 -423576 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 244-68 chr12 45687644 45687776 + 3 NA Intergenic MER21-int|LTR|ERVL 40211 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 346-36 chr1 219521601 219521737 + 3 NA intron (NR_135822, intron 1 of 3) MER45R|DNA|hAT-Tip100 35655 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 521-134 chr2 228312137 228312415 + 3 NA Intergenic Intergenic -130589 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 727-17 chr12 2047143 2047661 + 3 NA promoter-TSS (NR_046768) promoter-TSS (NR_046768) -950 NR_046768 100874369 Hs.208723 NR_046768 ENSG00000256257 CACNA1C-IT2 - CACNA1C intronic transcript 2 ncRNA 826-60 chr7 77818945 77819475 + 3 NA intron (NM_001366088, intron 1 of 11) L1MA5A|LINE|L1 20239 NM_001366086 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 227-233 chr3 130471441 130471567 + 3 NA intron (NM_153264, intron 39 of 39) intron (NM_153264, intron 39 of 39) -88830 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 395-23 chr1 211888588 211888809 + 3 NA Intergenic MIR|SINE|MIR 57737 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 318-454 chr5 114805608 114805766 + 3 NA Intergenic MIRb|SINE|MIR -32274 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 613-107 chr5 89582540 89582767 + 3 NA Intergenic MIR|SINE|MIR 434067 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 347-249 chr2 178166943 178167116 + 3 NA Intergenic Intergenic -27452 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 310-415 chr5 95601486 95601689 + 3 NA intron (NM_198150, intron 7 of 7) MIRb|SINE|MIR -18500 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 312-78 chr11 38755765 38755948 + 3 NA Intergenic LOR1-int|LTR|ERV1 106998 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 809-56 chr8 129793693 129794165 + 3 NA Intergenic L1PB|LINE|L1 -7305 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 1073-4 chr10 57239584 57240120 + 3 NA Intergenic MIRb|SINE|MIR 64707 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 552-165 chr4 187098626 187098968 + 3 NA Intergenic L1PA11|LINE|L1 -103189 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 384-364 chr8 53828714 53828901 + 3 NA intron (NM_213620, intron 4 of 13) intron (NM_213620, intron 4 of 13) 14235 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 372-4 chr1 18156750 18156912 + 3 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 49033 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 320-213 chr17 71932026 71932195 + 3 NA Intergenic Intergenic 93869 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 691-12 chr11 81189140 81189502 + 3 NA Intergenic Intergenic -426518 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 378-67 chr10 105825436 105825640 + 3 NA Intergenic Intergenic -5205 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 628-138 chr9 71181799 71182252 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -60404 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 644-58 chr3 59545344 59545600 + 3 NA Intergenic Intergenic 113025 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 425-301 chr8 87251651 87251877 + 3 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 385349 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 603-47 chr14 56261785 56262038 + 3 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 143500 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 544-77 chr15 60852137 60852342 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 170670 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 452-51 chr12 13503786 13503991 + 3 NA Intergenic Intergenic -127143 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 393-157 chr2 33942806 33942991 + 3 NA intron (NR_126403, intron 3 of 5) intron (NR_126403, intron 3 of 5) -124328 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 307-31 chr1 210895715 210895885 + 3 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 237574 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 516-88 chr16 4063143 4063522 + 3 NA intron (NM_001116, intron 2 of 10) L1M4|LINE|L1 53110 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 460-181 chr21 31771692 31771928 + 3 NA Intergenic MIRc|SINE|MIR -39692 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 527-158 chr21 27738500 27738724 + 3 NA intron (NR_024357, intron 1 of 3) ORSL-2b|DNA|hAT-Tip100 16233 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 400-187 chr2 227857021 227857262 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -14235 NR_138459 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 571-115 chr3 131360268 131360536 + 3 NA intron (NR_038976, intron 2 of 3) intron (NR_038976, intron 2 of 3) -1443 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 442-288 chr8 89281744 89282026 + 3 NA Intergenic MER4D|LTR|ERV1 475826 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 381-93 chr13 67686418 67686610 + 3 NA Intergenic Intergenic 314127 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 615-49 chr16 68575432 68575788 + 3 NA intron (NM_001305204, intron 4 of 4) LTR27C|LTR|ERV1 36319 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 806-8 chr11 80228915 80229361 + 3 NA Intergenic L1MA6|LINE|L1 533665 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 424-236 chr5 179173316 179173612 + 3 NA intron (NM_014244, intron 5 of 21) L1ME4a|LINE|L1 113091 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 226-150 chr2 15384955 15385056 + 3 NA intron (NR_052013, intron 28 of 50) intron (NR_052013, intron 28 of 50) 176329 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 774-26 chr14 87398462 87399100 + 3 NA Intergenic LTR37-int|LTR|ERV1 256513 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 368-74 chr11 31698231 31698386 + 3 NA intron (NM_001288726, intron 10 of 11) intron (NM_001288726, intron 10 of 11) 102353 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 362-443 chr8 106291173 106291393 + 3 NA intron (NM_018002, intron 1 of 15) L1PA16|LINE|L1 21105 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 377-95 chr12 93668220 93668404 + 3 NA Intergenic Intergenic -9059 NR_135147 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 511-182 chr3 177004410 177004658 + 3 NA Intergenic L1MD3|LINE|L1 -187533 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 676-36 chr14 86243644 86244126 + 3 NA Intergenic L1MC1|LINE|L1 309207 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 404-338 chr9 24767004 24767261 + 3 NA Intergenic Intergenic -221235 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 410-310 chr8 99470275 99470545 + 3 NA intron (NM_017890, intron 24 of 61) L1ME1|LINE|L1 66320 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 763-32 chr2 162943582 162944086 + 3 NA Intergenic L1M2|LINE|L1 -105067 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 306-521 chr8 120116319 120116540 + 3 NA Intergenic HAL1|LINE|L1 -8673 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 478-117 chr17 60755488 60755859 + 3 NA intron (NM_001330413, intron 6 of 25) L1ME4a|LINE|L1 77822 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 673-102 chr5 111121709 111122087 + 3 NA intron (NM_139281, intron 19 of 22) intron (NM_139281, intron 19 of 22) 29726 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 553-244 chr9 2432256 2432600 + 3 NA Intergenic Intergenic -189359 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 775-90 chr9 137362041 137362387 + 3 NA intron (NM_017820, intron 7 of 21) L1MEc|LINE|L1 -59943 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 504-216 chr5 110640390 110640581 + 3 NA intron (NM_001039763, intron 4 of 13) A-rich|Low_complexity|Low_complexity 86186 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 547-144 chr3 111353496 111353848 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -188525 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 420-310 chr9 89269841 89270060 + 3 NA Intergenic L1MA8|LINE|L1 -41245 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 458-72 chr14 60476644 60476860 + 3 NA intron (NM_174978, intron 5 of 17) L4_A_Mam|LINE|RTE-X 9311 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 396-332 chr7 52590550 52590823 + 3 NA Intergenic Intergenic -444947 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 621-20 chr11 55026622 55027001 + 3 NA Intergenic ALR/Alpha|Satellite|centr -235344 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 532-103 chr19 9551643 9551915 + 3 NA Intergenic Intergenic 13113 NR_134921 101928238 Hs.324978 NR_134920 ENSG00000278611 ZNF426-DT - ZNF426 divergent transcript ncRNA 385-39 chr10 97266508 97266680 + 3 NA intron (NM_032900, intron 1 of 11) THE1B|LTR|ERVL-MaLR 4063 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 430-49 chr11 8303770 8303963 + 3 NA Intergenic Intergenic -35079 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 509-205 chr5 150978606 150978889 + 3 NA Intergenic Intergenic -32163 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 728-98 chr8 81382548 81382954 + 3 NA Intergenic L1MA4A|LINE|L1 64688 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 849-38 chr5 146686218 146686730 + 3 NA intron (NM_181678, intron 6 of 10) MIR|SINE|MIR -170361 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 449-124 chr2 95133094 95133252 + 3 NA Intergenic L1MD1|LINE|L1 -11146 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 441-207 chr5 116546036 116546254 + 3 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -28273 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 873-27 chr4 131410623 131411058 + 3 NA Intergenic LOR1a|LTR|ERV1 -353998 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 424-225 chr5 90134892 90135171 + 3 NA Intergenic Intergenic -118311 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 703-39 chr17 70205467 70205772 + 3 NA Intergenic UCON26|Unknown|Unknown 36084 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 636-67 chr2 5404928 5405304 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 286002 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 1223-3 chr12 133086110 133086884 + 3 NA intron (NM_001300777, intron 4 of 4) L1ME3B|LINE|L1 6294 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 502-177 chr3 53661574 53661944 + 3 NA intron (NM_001128840, intron 5 of 47) intron (NM_001128840, intron 5 of 47) 167148 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 556-222 chr8 83703734 83704149 + 3 NA Intergenic Intergenic 300183 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 1385 chr11 50480338 50481067 + 3 NA Intergenic ALR/Alpha|Satellite|centr 71555 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 489-214 chr5 153059545 153059731 + 3 NA Intergenic LTR39|LTR|ERV1 -87289 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 464-125 chr2 106574543 106574792 + 3 NA Intergenic Intergenic 87303 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 683-68 chr5 58212950 58213254 + 3 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -90761 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 532-234 chr6 168399971 168400236 + 3 NA Intergenic Intergenic -41081 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 383-192 chr2 86007345 86007548 + 3 NA Intergenic L1MA8|LINE|L1 98440 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 646-61 chr2 114849567 114849970 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -16220 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 1100-5 chr12 14378401 14378948 + 3 NA intron (NM_001286515, intron 1 of 12) intron (NM_001286515, intron 1 of 12) -6607 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 846-24 chr2 143869756 143870179 + 3 NA Intergenic L1MD1|LINE|L1 -67100 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 439-169 chr21 32970312 32970504 + 3 NA Intergenic Intergenic 11520 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 798-59 chr7 15243074 15243428 + 3 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -268393 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 485-146 chr2 149186275 149186533 + 3 NA intron (NM_001317002, intron 4 of 7) Tigger1|DNA|TcMar-Tigger 68230 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 475-242 chr6 101139741 101139943 + 3 NA Intergenic Intergenic -258470 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 423-4 chr1 47262291 47262445 + 3 NA intron (NM_001282938, intron 17 of 18) intron (NM_001282938, intron 17 of 18) -30033 NM_001290403 6886 Hs.705618 NM_003189 ENSG00000162367 TAL1 SCL|TCL5|bHLHa17|tal-1 TAL bHLH transcription factor 1, erythroid differentiation factor protein-coding 499-113 chr2 37453008 37453226 + 3 NA Intergenic MamRTE1|LINE|RTE-BovB 108487 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 450-223 chr4 60959456 60959760 + 3 NA Intergenic LTR86A2|LTR|ERVL 36989 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 419-208 chr4 97896207 97896479 + 3 NA intron (NM_174952, intron 8 of 10) intron (NM_174952, intron 8 of 10) 247133 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 1014-19 chr4 77525991 77526599 + 3 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 14542 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 464-177 chr4 30325274 30325568 + 3 NA Intergenic L1PREC2|LINE|L1 -394948 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 841-10 chr14 51832715 51833255 + 3 NA Intergenic Intergenic -27627 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 305-246 chr2 43091590 43091808 + 3 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 10746 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 774-83 chr8 83930225 83930590 + 3 NA Intergenic Intergenic -252380 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 314-574 chr8 101122332 101122539 + 3 NA Intergenic Intergenic 70381 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 400-259 chr4 117360447 117360620 + 3 NA promoter-TSS (NR_147152) promoter-TSS (NR_147152) 106 NR_147151 105377389 Hs.129401 NR_147151 ENSG00000224932 LINC02262 - long intergenic non-protein coding RNA 2262 ncRNA 824-7 chr12 24157022 24157571 + 3 NA intron (NM_152989, intron 4 of 17) Helitron1Na_Mam|RC|Helitron -55125 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 703-32 chr15 57432372 57432805 + 3 NA intron (NM_001252335, intron 2 of 19) intron (NM_001252335, intron 2 of 19) 56083 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 508-201 chr6 40078354 40078545 + 3 NA Intergenic Intergenic -143987 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 464-178 chr4 31647772 31647983 + 3 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 141333 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 521-119 chr2 37829726 37829980 + 3 NA promoter-TSS (NR_110011) promoter-TSS (NR_110011) -142 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 525-141 chr20 43603657 43603882 + 3 NA exon (NM_001303459, exon 4 of 13) exon (NM_001303459, exon 4 of 13) 12832 NM_001323580 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 547-68 chr14 62576466 62576801 + 3 NA Intergenic L1MA1|LINE|L1 -436660 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 602-134 chr8 130830365 130830637 + 3 NA intron (NM_001115, intron 12 of 17) LTR9|LTR|ERV1 210408 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 529-238 chr9 111131577 111131851 + 3 NA Intergenic L2|LINE|L2 -92716 NM_001351397 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 853-38 chr7 29067512 29068133 + 3 NA intron (NM_001371256, intron 13 of 16) MIR|SINE|MIR -57211 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 734-37 chr2 63136257 63136660 + 3 NA intron (NR_148704, intron 18 of 18) (TATAATA)n|Simple_repeat|Simple_repeat -16916 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 373-401 chr8 61451138 61451419 + 3 NA intron (NM_173519, intron 3 of 5) L1ME4a|LINE|L1 163308 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 387-362 chr8 80943277 80943435 + 3 NA Intergenic Intergenic -68575 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 412-15 chr1 203458564 203458750 + 3 NA Intergenic L1MEd|LINE|L1 -17149 NM_201348 5549 Hs.632481 NM_002725 ENSG00000188783 PRELP MST161|MSTP161|SLRR2A proline and arginine rich end leucine rich repeat protein protein-coding 593-125 chr6 129834641 129834847 + 3 NA intron (NM_001010876, intron 3 of 4) intron (NM_001010876, intron 3 of 4) 26571 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 741-2 chr1 113495716 113496180 + 3 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 105433 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 519-176 chr5 62679552 62679796 + 3 NA Intergenic AluJr|SINE|Alu 100855 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 433-299 chr9 38251657 38251843 + 3 NA Intergenic Intergenic -140952 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 341-206 chr18 8095697 8095911 + 3 NA intron (NM_002845, intron 11 of 30) intron (NM_002845, intron 11 of 30) 271230 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 449-195 chr4 113922750 113922978 + 3 NA intron (NM_001354211, intron 4 of 6) MLT2D|LTR|ERVL 56783 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 347-167 chr16 63118973 63119123 + 3 NA Intergenic L1ME1|LINE|L1 -1082610 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 234-244 chr3 95368860 95369015 + 3 NA Intergenic Intergenic 314256 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 667-82 chr5 3077325 3077709 + 3 NA Intergenic Intergenic -100318 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 698 chr1 23539527 23539861 + 3 NA Intergenic AluSz|SINE|Alu -8461 NM_004091 1870 Hs.194333 NM_004091 ENSG00000007968 E2F2 E2F-2 E2F transcription factor 2 protein-coding 427-272 chr8 136841408 136841661 + 3 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 310736 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 332-14 chr1 100700469 100700604 + 3 NA Intergenic Intergenic -19104 NM_080682 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 549-149 chr4 58627921 58628118 + 3 NA Intergenic AluSx|SINE|Alu -91691 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 577-169 chr6 60674757 60675093 + 3 NA Intergenic L1M4|LINE|L1 -899205 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 935-23 chr2 238000840 238001227 + 3 NA intron (NR_037904, intron 4 of 18) L1ME1|LINE|L1 32240 NM_001278305 140739 Hs.471785 NM_080678 ENSG00000184182 UBE2F NCE2 ubiquitin conjugating enzyme E2 F (putative) protein-coding 537-109 chr2 55976072 55976376 + 3 NA intron (NR_126406, intron 2 of 2) L2a|LINE|L2 6852 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 539-215 chr9 27760036 27760255 + 3 NA Intergenic Intergenic -186279 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 657-39 chr17 54579877 54580375 + 3 NA Intergenic L1M1|LINE|L1 -320565 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 761-74 chr8 90102553 90102969 + 3 NA Intergenic L1MA9|LINE|L1 -19882 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 1942 chr18 5926474 5927637 + 3 NA Intergenic L1MEi|LINE|L1 -31101 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 540-220 chr8 143413481 143413823 + 3 NA Intergenic Intergenic -4027 NR_126358 104326051 Hs.202140 NR_126358 ENSG00000254338 MAFA-AS1 TCONS_00014882 MAFA antisense RNA 1 ncRNA 568-176 chr6 150891273 150891566 + 3 NA intron (NM_001350486, intron 7 of 27) L1ME3Cz|LINE|L1 24933 NM_001350491 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 692-91 chr7 42761428 42761799 + 3 NA Intergenic Intergenic -55166 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 582-128 chr5 121562127 121562444 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR 239735 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 444-71 chr15 25025411 25025586 + 3 NA intron (NR_146177, intron 23 of 147) intron (NR_146177, intron 23 of 147) -6375 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 516-26 chr10 108139477 108139721 + 3 NA Intergenic Intergenic -70306 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 252-463 chrX 81727356 81727528 + 3 NA Intergenic L1PA14|LINE|L1 525340 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 627-14 chr10 119172358 119172662 + 3 NA intron (NR_126103, intron 2 of 4) intron (NR_126103, intron 2 of 4) 6302 NR_126105 10935 Hs.523302 NM_006793 ENSG00000165672 PRDX3 AOP-1|AOP1|HBC189|MER5|PRO1748|SP-22|prx-III peroxiredoxin 3 protein-coding 468-273 chr5 180749831 180750022 + 3 NA Intergenic Intergenic -9868 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 444-203 chr5 115047234 115047450 + 3 NA Intergenic L2b|LINE|L2 122566 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 510-24 chr1 240711841 240712053 + 3 NA Intergenic Intergenic -99792 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 445-152 chr20 16087658 16087926 + 3 NA Intergenic L1MA5A|LINE|L1 -101910 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 1057-5 chr16 80661415 80662019 + 3 NA intron (NM_152342, intron 2 of 6) intron (NM_152342, intron 2 of 6) -88909 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 465-26 chr10 38138571 38138755 + 3 NA intron (NM_001324258, intron 6 of 6) intron (NM_001324258, intron 6 of 6) -37008 NR_024524 100129055 Hs.148265 NR_024524 LOC100129055 - cyclin Y like 1 pseudogene pseudo 437-25 chr10 64226140 64226326 + 3 NA Intergenic L1MA5|LINE|L1 -599295 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 609-98 chr5 45172167 45172507 + 3 NA Intergenic Intergenic 363390 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 338-295 chr20 24372526 24372687 + 3 NA Intergenic Intergenic -96593 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 291-162 chr16 63960955 63961151 + 3 NA Intergenic Intergenic 1161010 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 688-75 chr3 70147934 70148345 + 3 NA Intergenic L1MD|LINE|L1 148395 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 644-21 chr14 71892999 71893331 + 3 NA Intergenic LTR82B|LTR|ERVL -39006 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 514-128 chr18 64508010 64508291 + 3 NA Intergenic Intergenic -248095 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 572-141 chr5 77709223 77709729 + 3 NA intron (NM_004607, intron 1 of 3) intron (NM_004607, intron 1 of 3) 66863 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 530-179 chr4 69947373 69947643 + 3 NA TTS (NM_001025104) TTS (NM_001025104) 13503 NM_001302770 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 612-141 chr8 86912617 86912913 + 3 NA intron (NM_173538, intron 3 of 10) Tigger3b|DNA|TcMar-Tigger 46350 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1012-4 chr12 48597137 48597788 + 3 NA Intergenic Intergenic -27416 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 386-206 chr20 38874937 38875093 + 3 NA intron (NM_015568, intron 2 of 10) intron (NM_015568, intron 2 of 10) -51402 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 966-19 chr5 10188525 10189017 + 3 NA Intergenic MIRb|SINE|MIR 61117 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 633-65 chr2 117019569 117020045 + 3 NA Intergenic Intergenic -794884 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 468-196 chr3 68876849 68877059 + 3 NA intron (NM_001005527, intron 3 of 5) MIR|SINE|MIR 55593 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 465-316 chr9 68629071 68629341 + 3 NA Intergenic Intergenic -76034 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 276-331 chr4 57095057 57095221 + 3 NA intron (NM_001553, intron 1 of 4) Tigger17a|DNA|TcMar-Tigger -14623 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 491-20 chr10 67401376 67401578 + 3 NA intron (NM_001127384, intron 5 of 17) L1P4a|LINE|L1 1933 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 298-209 chr2 49518410 49518619 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -363987 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 651-92 chr4 60986388 60986711 + 3 NA Intergenic HAL1|LINE|L1 63930 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 851-14 chr17 49116487 49117056 + 3 NA Intergenic MamRep1151|LTR?|LTR? -15689 NM_001159388 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 515-156 chr3 19085179 19085437 + 3 NA Intergenic L1MC1|LINE|L1 -63202 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 486-9 chr1 97026950 97027155 + 3 NA Intergenic L1P3|LINE|L1 -68871 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 673-127 chr9 23969118 23969403 + 3 NA Intergenic L1M4|LINE|L1 -118659 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 1112-9 chr4 93284655 93285239 + 3 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -543806 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 561-116 chr21 16699538 16699795 + 3 NA Intergenic L1ME1|LINE|L1 109429 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 506-122 chr2 14689113 14689313 + 3 NA Intergenic L3|LINE|CR1 56496 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 335-187 chr16 61500582 61500776 + 3 NA Intergenic Intergenic -444913 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 653-134 chrX 45630838 45631265 + 3 NA Intergenic L1MCb|LINE|L1 -100037 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 817-42 chr5 4563113 4563487 + 3 NA Intergenic L1M1|LINE|L1 -210181 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 584-147 chr6 54905985 54906270 + 3 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 59356 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 637-51 chr18 28383574 28383948 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -206631 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 527-263 chr8 76781717 76782089 + 3 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -98628 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 648-108 chr5 26824090 26824440 + 3 NA Intergenic Intergenic 214321 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 430-154 chr2 142026571 142026819 + 3 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 105006 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 376-319 chr5 45203726 45203920 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 394876 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 493-91 chr15 25071630 25071923 + 3 NA intron (NR_146177, intron 32 of 147) intron (NR_146177, intron 32 of 147) -1330 NR_003318 100033415 NR_003318 ENSG00000207014 SNORD116-3 HBII-85-3 small nucleolar RNA, C/D box 116-3 snoRNA 482-141 chr2 228910194 228910604 + 3 NA Intergenic L1PA10|LINE|L1 -299004 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 485-22 chr1 240710473 240710637 + 3 NA Intergenic L1MA2|LINE|L1 -98400 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 501-171 chr3 86713890 86714127 + 3 NA Intergenic Intergenic 232065 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 685-95 chr8 84401691 84402111 + 3 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -13583 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 460-83 chr14 68220518 68220733 + 3 NA intron (NM_133509, intron 7 of 10) L1PB1|LINE|L1 397033 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 301-110 chr14 26831051 26831230 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -9020 NR_110033 101927062 NR_110033 ENSG00000257845 LINC02294 - long intergenic non-protein coding RNA 2294 ncRNA 980-14 chr4 47414389 47415064 + 3 NA intron (NM_000812, intron 8 of 8) intron (NM_000812, intron 8 of 8) 48976 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 344-240 chr2 76846549 76846688 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -139347 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 393-46 chr10 108049918 108050054 + 3 NA intron (NR_125760, intron 1 of 4) intron (NR_125760, intron 1 of 4) 19307 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 597-95 chr3 120987985 120988346 + 3 NA intron (NR_145517, intron 3 of 8) L1MD|LINE|L1 -61475 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 1107 chr1 113512330 113513086 + 3 NA intron (NM_001142782, intron 1 of 20) L1PA3|LINE|L1 122193 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 636-161 chr9 103161114 103161443 + 3 NA intron (NR_121578, intron 8 of 9) intron (NR_121578, intron 8 of 9) 163755 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 826-7 chr10 30157689 30158071 + 3 NA Intergenic L1M5|LINE|L1 -42386 NM_001350021 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 342-416 chr5 105563431 105563584 + 3 NA Intergenic Intergenic 464033 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 571-16 chr10 64815345 64815732 + 3 NA Intergenic Intergenic -9990 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 521-56 chr11 105058362 105058673 + 3 NA Intergenic (TAGA)n|Simple_repeat|Simple_repeat 13013 NR_131905 440067 Hs.446758 NR_131905 CASP1P2 - caspase 1 pseudogene 2 pseudo 340-244 chr2 42870147 42870351 + 3 NA Intergenic L1ME3A|LINE|L1 -77666 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 566-88 chr2 56728292 56728666 + 3 NA Intergenic Intergenic -542709 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 447-158 chr21 30148173 30148438 + 3 NA Intergenic Intergenic 18500 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 601-37 chr14 31747497 31747885 + 3 NA intron (NM_001201574, intron 1 of 5) L1M2|LINE|L1 33122 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 540-175 chr5 80191065 80191303 + 3 NA intron (NR_126061, intron 2 of 13) LTR54|LTR|ERV1 64864 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 397-185 chr20 28804496 28804646 + 3 NA Intergenic ALR/Alpha|Satellite|centr -201906 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 592-142 chr5 62993770 62994030 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 415081 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 419-111 chr17 30780294 30780468 + 3 NA intron (NR_144395, intron 8 of 9) MER77|LTR|ERVL 44311 NM_015986 51379 Hs.649372 NM_015986 ENSG00000176390 CRLF3 CREME-9|CREME9|CRLM9|CYTOR4|FRWS|p48.2 cytokine receptor like factor 3 protein-coding 797-22 chr19 51946625 51947058 + 3 NA TTS (NM_024840) TTS (NM_024840) -2293 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 536-212 chr7 37063469 37063794 + 3 NA intron (NM_001206480, intron 15 of 21) L2|LINE|L2 65835 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 263-34 chr1 241773953 241774050 + 3 NA intron (NM_001367482, intron 20 of 27) intron (NM_001367482, intron 20 of 27) -74190 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 525-140 chr20 37635972 37636302 + 3 NA Intergenic Intergenic -13018 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 901-8 chr10 99028554 99028946 + 3 NA intron (NM_021828, intron 3 of 11) L1MA1|LINE|L1 -104182 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 411-269 chr7 27620697 27620889 + 3 NA intron (NR_122122, intron 2 of 2) L1M2|LINE|L1 4819 NR_122122 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 475-69 chr13 47748682 47748886 + 3 NA Intergenic Intergenic 183838 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 363-130 chr14 32670919 32671080 + 3 NA intron (NM_004274, intron 7 of 13) L2a|LINE|L2 -267880 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 422-55 chr12 7369861 7370060 + 3 NA intron (NM_001297650, intron 14 of 19) intron (NM_001297650, intron 14 of 19) 65628 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 509-173 chr4 55908936 55909194 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -39880 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 411-152 chr2 103599636 103599971 + 3 NA Intergenic L1PA16|LINE|L1 -615374 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 530 chr1 4206435 4206748 + 3 NA Intergenic L1PB4|LINE|L1 -205460 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 566-55 chr15 57145535 57145748 + 3 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -73789 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 266-76 chr11 114696923 114697091 + 3 NA intron (NM_182495, intron 2 of 5) MER44A|DNA|TcMar-Tigger 18480 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 606-92 chr2 187162568 187162963 + 3 NA Intergenic Intergenic 285487 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 932-18 chr4 64024809 64025483 + 3 NA Intergenic L1PA15-16|LINE|L1 384304 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 494-105 chr18 21733399 21733628 + 3 NA Intergenic AluJr|SINE|Alu -7816 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 547-21 chr10 57544898 57545201 + 3 NA Intergenic L1ME1|LINE|L1 -240490 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 414-230 chr4 48526912 48527138 + 3 NA intron (NM_015030, intron 53 of 63) (TGTATA)n|Simple_repeat|Simple_repeat 36773 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 651-53 chr18 46581136 46581463 + 3 NA intron (NM_144612, intron 12 of 39) L2|LINE|L2 -21987 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 368-259 chr20 2868655 2868938 + 3 NA intron (NM_002836, intron 5 of 27) intron (NM_002836, intron 5 of 27) 4601 NM_002836 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 678-8 chr10 50593074 50593424 + 3 NA intron (NM_147156, intron 1 of 10) MLT1F|LTR|ERVL-MaLR 30707 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 501-16 chr1 214882162 214882519 + 3 NA Intergenic L1MB7|LINE|L1 -123202 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 401-233 chr4 87988942 87989113 + 3 NA Intergenic Intergenic 13313 NM_001040058 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 300-425 chr7 44366532 44366683 + 3 NA Intergenic L1MD2|LINE|L1 -40976 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 1076-18 chr4 64770462 64771010 + 3 NA Intergenic Intergenic 233764 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 608-117 chr4 158954986 158955351 + 3 NA intron (NM_152543, intron 3 of 4) (AC)n|Simple_repeat|Simple_repeat 80061 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 865-31 chr22 27953413 27954014 + 3 NA intron (NR_026963, intron 2 of 4) L1ME4b|LINE|L1 -33101 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 1203-2 chr1 217189495 217190195 + 3 NA Intergenic L1ME1|LINE|L1 -52143 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 480-132 chr19 52389528 52389757 + 3 NA intron (NR_125345, intron 6 of 6) THE1B-int|LTR|ERVL-MaLR 8115 NR_125345 102724105 Hs.188680 NR_125345 ENSG00000269834 ZNF528-AS1 - ZNF528 antisense RNA 1 ncRNA 650-103 chr6 52032761 52033143 + 3 NA intron (NM_138694, intron 29 of 66) intron (NM_138694, intron 29 of 66) 54661 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 623-24 chr11 60270784 60271128 + 3 NA Intergenic L1PA15|LINE|L1 -9710 NM_001243266 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 508-195 chr5 145923784 145924041 + 3 NA Intergenic L1ME4b|LINE|L1 -12666 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 271-312 chr4 70797317 70797417 + 3 NA intron (NM_001037442, intron 14 of 17) HSMAR2|DNA|TcMar-Mariner 42136 NM_001098477 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 432-286 chr8 68007393 68007667 + 3 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 55484 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 553-4 chr1 47562437 47562714 + 3 NA Intergenic Intergenic -125258 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 788-26 chr18 62075103 62075443 + 3 NA intron (NM_176787, intron 28 of 30) L1MD1|LINE|L1 111783 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 530-247 chr8 26982798 26982996 + 3 NA Intergenic L1MA10|LINE|L1 66066 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 405-83 chr14 36665425 36665706 + 3 NA intron (NM_006194, intron 3 of 4) intron (NM_006194, intron 3 of 4) 7997 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 384-110 chr14 66574947 66575140 + 3 NA intron (NM_001024218, intron 1 of 21) Ricksha_c|DNA|MULE-MuDR 67636 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 717-19 chr10 98886283 98886716 + 3 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 38069 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 1129-18 chr6 47978630 47979119 + 3 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 89815 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 407-247 chr5 58185259 58185436 + 3 NA Intergenic Intergenic -63006 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 737-52 chr22 48728242 48728634 + 3 NA intron (NM_001082967, intron 3 of 3) MIR|SINE|MIR -51857 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 416-243 chr4 35560428 35560603 + 3 NA Intergenic Intergenic 683424 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 1123-20 chrUn_KI270465v1 164 659 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 752-56 chr4 88509663 88510128 + 3 NA Intergenic Intergenic 13881 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 544-88 chr16 73406496 73406792 + 3 NA intron (NR_038234, intron 1 of 2) intron (NR_038234, intron 1 of 2) 19839 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 855-17 chr15 57100195 57100677 + 3 NA intron (NM_207038, intron 5 of 19) FLAM_C|SINE|Alu -118994 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 797-38 chr4 130985839 130986283 + 3 NA Intergenic L1ME3E|LINE|L1 609700 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 715-75 chr6 26643782 26644265 + 3 NA intron (NM_001242799, intron 1 of 2) intron (NM_001242799, intron 1 of 2) 15723 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 415-212 chr5 32731718 32731985 + 3 NA intron (NM_001363652, intron 2 of 7) MLT1J|LTR|ERVL-MaLR 20530 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 487-217 chr4 119084423 119084728 + 3 NA Intergenic L1PB4|LINE|L1 -51209 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 801-36 chr4 8337080 8337524 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 17126 NR_149125 105374374 Hs.145224 NR_149125 ENSG00000249145 LINC02517 - long intergenic non-protein coding RNA 2517 ncRNA 651-60 chr2 48006930 48007450 + 3 NA Intergenic HAL1M8|LINE|L1 -101397 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 522-248 chr8 81384741 81385009 + 3 NA Intergenic L1MA4A|LINE|L1 62564 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 468-180 chr21 24972410 24972773 + 3 NA intron (NR_046198, intron 2 of 3) L1MB8|LINE|L1 132041 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 1622-2 chr14 89597770 89598700 + 3 NA intron (NM_001085471, intron 1 of 6) L1MEg|LINE|L1 20930 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 359-227 chr2 36867833 36868066 + 3 NA intron (NM_003162, intron 11 of 17) intron (NM_003162, intron 11 of 17) 98587 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 578-153 chr7 3420449 3420711 + 3 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 119328 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 499-102 chr19 30051768 30052004 + 3 NA Intergenic Intergenic 109647 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 669-5 chr1 69414427 69414685 + 3 NA Intergenic L1ME3A|LINE|L1 -18699 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 423-150 chr20 6288636 6288805 + 3 NA Intergenic L1MB1|LINE|L1 -138012 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 571-111 chr3 116728559 116728955 + 3 NA Intergenic Intergenic 18969 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 1005-8 chr18 73312665 73313343 + 3 NA Intergenic Intergenic -11937 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 504-34 chr11 12932868 12933048 + 3 NA intron (NM_021961, intron 12 of 12) Tigger3c|DNA|TcMar-Tigger 56590 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 541-250 chr8 139066323 139066566 + 3 NA Intergenic Intergenic -152403 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 922-33 chr7 45537716 45538326 + 3 NA Intergenic MLT2D|LTR|ERVL -36119 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 532-228 chr6 88320693 88320881 + 3 NA Intergenic Intergenic -153438 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 448-86 chr15 27143652 27143879 + 3 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 17554 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 719-60 chr5 19015579 19016020 + 3 NA Intergenic L1MA10|LINE|L1 870473 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 545-225 chr7 68345262 68345628 + 3 NA Intergenic L1MEg|LINE|L1 325192 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 538-105 chr2 27974515 27974735 + 3 NA intron (NM_199193, intron 4 of 13) L1ME1|LINE|L1 -21742 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 370-221 chr2 39537096 39537308 + 3 NA intron (NR_037875, intron 5 of 5) L1MD3|LINE|L1 99786 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 601-86 chr22 34624588 34625020 + 3 NA Intergenic AluSg|SINE|Alu 373112 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 533-152 chr4 48467073 48467309 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -16152 NM_152679 201780 Hs.132591 NM_152679 ENSG00000145248 SLC10A4 P4 solute carrier family 10 member 4 protein-coding 461-246 chr7 29130350 29130553 + 3 NA intron (NM_001371261, intron 2 of 13) MER103C|DNA|hAT-Charlie 5418 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 557-181 chr7 29252945 29253159 + 3 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -44082 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 418-287 chr8 90254312 90254537 + 3 NA intron (NR_051989, intron 2 of 3) L1MEf|LINE|L1 32936 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 525-227 chr6 123412310 123412576 + 3 NA intron (NM_001251987, intron 12 of 20) MER3|DNA|hAT-Charlie -27161 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 532-12 chr1 203894772 203895100 + 3 NA Intergenic L1MEc|LINE|L1 33089 NM_001328638 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 278-420 chr8 111400092 111400290 + 3 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 23552 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 441-254 chr8 2831585 2831853 + 3 NA Intergenic Intergenic -103268 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 361-233 chr2 133245768 133245973 + 3 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -20325 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 564-184 chr7 36003562 36003884 + 3 NA Intergenic Intergenic -91587 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 249-23 chr1 172990425 172990542 + 3 NA Intergenic L1M5|LINE|L1 60480 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 442-67 chr13 90476644 90476946 + 3 NA Intergenic Intergenic -16493 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 352-384 chr4 115917418 115917574 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -382229 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 485-289 chr8 110087731 110087952 + 3 NA Intergenic Intergenic -112070 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 407-196 chr3 70232764 70233006 + 3 NA intron (NM_001364677, intron 2 of 3) intron (NM_001364677, intron 2 of 3) 79753 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 262-386 chr6 147370724 147370857 + 3 NA intron (NM_139244, intron 23 of 25) intron (NM_139244, intron 23 of 25) -137900 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 480-217 chr4 66131012 66131293 + 3 NA Intergenic L1ME3B|LINE|L1 -145672 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 447-283 chr8 141927095 141927357 + 3 NA Intergenic L5|LINE|RTE-X -140913 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 403-237 chr5 13112021 13112266 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -79257 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 301-437 chr8 25152830 25153016 + 3 NA Intergenic Charlie10|DNA|hAT-Charlie -31766 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 320-491 chr6 92902406 92902584 + 3 NA Intergenic L1ME3A|LINE|L1 517064 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 500-5 chr1 71125568 71125805 + 3 NA intron (NR_046217, intron 2 of 3) L1M3f|LINE|L1 44362 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 461-14 chr1 159701517 159701697 + 3 NA Intergenic LTR39|LTR|ERV1 12982 NM_001329058 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 525-165 chr3 97124480 97124713 + 3 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 310002 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 898-41 chr8 136978004 136978619 + 3 NA Intergenic Intergenic 435277 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 516-110 chr19 27649391 27649573 + 3 NA Intergenic HSAT4|Satellite|centr -143949 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 418-250 chr6 147871071 147871256 + 3 NA Intergenic Intergenic 362473 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 524-5 chr1 56001861 56002066 + 3 NA Intergenic LTR33A_|LTR|ERVL 56876 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 616-65 chr18 30780871 30781238 + 3 NA Intergenic Intergenic 261688 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 341-152 chr14 70447674 70447822 + 3 NA Intergenic L1MC5|LINE|L1 -4426 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 641-29 chr12 60069168 60069532 + 3 NA Intergenic Intergenic 379980 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 236-134 chr16 50535288 50535449 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -13028 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 360-101 chr12 128212034 128212207 + 3 NA Intergenic Intergenic -55283 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 575-141 chr5 7008761 7009098 + 3 NA Intergenic Intergenic -181008 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 529-210 chr8 32477375 32477759 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 36821 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 705-53 chr2 81990728 81991036 + 3 NA Intergenic L1MEf|LINE|L1 -523936 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 486-294 chr8 85934276 85934466 + 3 NA Intergenic (AAAACA)n|Simple_repeat|Simple_repeat -106429 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 606-11 chr1 190301350 190301633 + 3 NA intron (NM_199051, intron 2 of 7) L1MDa|LINE|L1 174519 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 610-127 chr4 91387262 91387625 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 889859 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 437-273 chr8 81271824 81272024 + 3 NA Intergenic Intergenic -8612 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 649-85 chr5 24621277 24621666 + 3 NA intron (NM_001362460, intron 1 of 9) L2a|LINE|L2 23507 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 778-56 chr5 135680918 135681292 + 3 NA intron (NM_001349335, intron 3 of 10) AluSp|SINE|Alu -27170 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 406-11 chr1 101844632 101844801 + 3 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 2364 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 455-178 chr4 31755994 31756214 + 3 NA Intergenic Intergenic -241275 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 547-149 chr3 173466183 173466585 + 3 NA intron (NM_014932, intron 2 of 6) MER63A|DNA|hAT-Blackjack 68640 NM_001365931 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 460-245 chr5 114823823 114824161 + 3 NA Intergenic Intergenic -50579 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 488-43 chr11 16205103 16205401 + 3 NA intron (NM_033326, intron 4 of 15) intron (NM_033326, intron 4 of 15) 151294 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 600-105 chr5 155243869 155244116 + 3 NA Intergenic L1PB2|LINE|L1 230237 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 411-232 chr5 97549177 97549375 + 3 NA intron (NR_105028, intron 2 of 3) HAL1ME|LINE|L1 44580 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 628-136 chr8 134375086 134375368 + 3 NA Intergenic L1MEg|LINE|L1 -222844 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 809-29 chr22 22092432 22092931 + 3 NA Intergenic L1MA6|LINE|L1 -48747 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 277-186 chr2 47568412 47568540 + 3 NA intron (NM_022055, intron 1 of 1) intron (NM_022055, intron 1 of 1) 1855 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 413-178 chr22 26777106 26777292 + 3 NA intron (NR_110543, intron 4 of 5) intron (NR_110543, intron 4 of 5) -83012 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 546-85 chr17 16614258 16614512 + 3 NA Intergenic L1MEg|LINE|L1 39465 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 604-74 chr19 57699997 57700440 + 3 NA non-coding (NR_110974, exon 4 of 4) non-coding (NR_110974, exon 4 of 4) 8986 NR_110974 7710 Hs.646378 NM_003444 ENSG00000179909 ZNF154 pHZ-92 zinc finger protein 154 protein-coding 480-89 chr15 24893668 24893950 + 3 NA intron (NM_001349456, intron 2 of 12) U13_|snRNA|snRNA 37297 NM_001349462 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 495-58 chr13 67587092 67587297 + 3 NA Intergenic L1MA4A|LINE|L1 214807 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 473-119 chr19 21424826 21425071 + 3 NA exon (NM_001076678, exon 4 of 4) exon (NM_001076678, exon 4 of 4) 27815 NM_145326 284443 Hs.656558 NM_145326 ENSG00000196268 ZNF493 - zinc finger protein 493 protein-coding 592-62 chr17 34269047 34269305 + 3 NA Intergenic Intergenic -1045 NM_006273 6354 Hs.251526 NM_006273 ENSG00000108688 CCL7 FIC|MARC|MCP-3|MCP3|NC28|SCYA6|SCYA7 C-C motif chemokine ligand 7 protein-coding 647-107 chrX 73636285 73636658 + 3 NA intron (NM_001300884, intron 3 of 4) L1M4|LINE|L1 73323 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 332-381 chr4 90744372 90744579 + 3 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 509444 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 474-69 chr12 118913529 118913746 + 3 NA Intergenic Intergenic -67904 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 421-131 chr2 29606326 29606512 + 3 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -131042 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 567-11 chr1 162838717 162838926 + 3 NA Intergenic LTR8|LTR|ERV1 29994 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 349-149 chr14 30189760 30189918 + 3 NA Intergenic L2|LINE|L2 -261992 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 201-6 chr1 75895686 75895814 + 3 NA intron (NM_002440, intron 17 of 19) ERVL-B4-int|LTR|ERVL 36654 NR_026546 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 493-18 chr1 176747763 176748006 + 3 NA intron (NM_020318, intron 14 of 22) MLT1F2|LTR|ERVL-MaLR 281561 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 401-47 chr11 4551464 4551704 + 3 NA Intergenic HUERS-P2-int|LTR|ERV1 6393 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 1119-8 chr5 28231912 28232559 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 55430 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 241-17 chr1 118344422 118344572 + 3 NA Intergenic Intergenic -159269 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 362-130 chr12 132924788 132924990 + 3 NA 3' UTR (NM_183238, exon 5 of 5) 3' UTR (NM_183238, exon 5 of 5) 31417 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 281-50 chr10 107794084 107794206 + 3 NA Intergenic Intergenic 275148 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 529-230 chr9 30388982 30389206 + 3 NA non-coding (NR_046204, exon 3 of 3) non-coding (NR_046204, exon 3 of 3) 19360 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 638-85 chr3 71744200 71744562 + 3 NA intron (NM_173359, intron 1 of 7) HAL1|LINE|L1 9210 NM_001282886 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 421-135 chr2 51407325 51407615 + 3 NA intron (NR_135237, intron 4 of 10) L1MC1|LINE|L1 374869 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 785-51 chr6 65678410 65678833 + 3 NA intron (NM_001292009, intron 1 of 43) L1MB1|LINE|L1 28604 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 563-64 chr16 71852067 71852403 + 3 NA 3' UTR (NM_001137675, exon 3 of 3) 3' UTR (NM_001137675, exon 3 of 3) 6259 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1 like protein-coding 500-53 chr11 70937836 70938161 + 3 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -65630 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 636-84 chr20 56141695 56142119 + 3 NA Intergenic LTR8B|LTR|ERV1 -106825 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 988-26 chr4 110469059 110469500 + 3 NA Intergenic Intergenic -6876 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 859-9 chr13 89488592 89488983 + 3 NA intron (NR_131228, intron 1 of 1) intron (NR_131228, intron 1 of 1) 11722 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 536-185 chr5 90066366 90066654 + 3 NA Intergenic Intergenic -49790 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 856-22 chr2 105254231 105254810 + 3 NA intron (NM_001328646, intron 11 of 11) intron (NM_001328646, intron 11 of 11) 12777 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 503-3 chr1 14171871 14172209 + 3 NA Intergenic Intergenic 247933 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 328-150 chr14 58744012 58744153 + 3 NA Intergenic Intergenic -84206 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 373-87 chr12 19609656 19609826 + 3 NA Intergenic Intergenic 169142 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 429-223 chr5 11347596 11347824 + 3 NA intron (NM_001288715, intron 7 of 20) intron (NM_001288715, intron 7 of 20) 241207 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 542-129 chr3 54544124 54544424 + 3 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 95583 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 883-45 chrX 58340937 58341550 + 3 NA Intergenic ALR/Alpha|Satellite|centr -430610 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 271-289 chr4 2097000 2097207 + 3 NA intron (NM_181808, intron 19 of 25) L1MB4|LINE|L1 37776 NM_178557 339983 Hs.318529 NM_178557 ENSG00000185818 NAT8L CML3|NACED|NAT8-LIKE N-acetyltransferase 8 like protein-coding 434-30 chr1 247261807 247262120 + 3 NA Intergenic Intergenic 5891 NR_160309 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 1163-14 chr7 31869216 31869856 + 3 NA intron (NM_001191059, intron 7 of 18) L1MA4A|LINE|L1 182321 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 462-139 chr2 106633813 106634005 + 3 NA Intergenic Intergenic 146545 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 499-119 chr2 63468234 63468552 + 3 NA intron (NR_148704, intron 7 of 18) HAL1|LINE|L1 -30386 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 339-286 chr2 166996678 166996908 + 3 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 108306 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 346-53 chr10 104893821 104893993 + 3 NA intron (NM_014978, intron 2 of 26) X1_LINE|LINE|CR1 -227691 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 747-7 chr10 56093333 56093719 + 3 NA Intergenic L1PA10|LINE|L1 267733 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 506-3 chr1 59836798 59837010 + 3 NA exon (NM_015888, exon 7 of 22) exon (NM_015888, exon 7 of 22) 21955 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 316-302 chr2 199352432 199352554 + 3 NA intron (NM_001172509, intron 6 of 10) intron (NM_001172509, intron 6 of 10) 105446 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 359-520 chrX 52256345 52256563 + 3 NA Intergenic L1MC1|LINE|L1 65832 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 464-24 chr10 91670904 91671106 + 3 NA Intergenic Intergenic -37934 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 939-21 chr5 161196467 161196865 + 3 NA Intergenic AluSq2|SINE|Alu -258040 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 431-34 chr10 28846678 28846934 + 3 NA intron (NM_001278522, intron 1 of 4) intron (NM_001278522, intron 1 of 4) 398 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 182-14 chr1 201652357 201652461 + 3 NA intron (NM_020443, intron 1 of 29) intron (NM_020443, intron 1 of 29) 4087 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 592-122 chr3 187306406 187306823 + 3 NA Intergenic Intergenic -14592 NM_001031849 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 364-104 chr12 44444060 44444257 + 3 NA Intergenic MIRc|SINE|MIR 431503 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 504-85 chr15 92602142 92602554 + 3 NA Intergenic Intergenic -30085 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 337-378 chr4 10358189 10358371 + 3 NA Intergenic Intergenic 99146 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 703-90 chr8 21873671 21874079 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 39815 NM_003974 9046 Hs.71215 NM_003974 ENSG00000147443 DOK2 p56DOK|p56dok-2 docking protein 2 protein-coding 414-155 chr2 98781272 98781528 + 3 NA Intergenic Intergenic -9502 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 801-63 chr8 131439615 131440043 + 3 NA Intergenic Intergenic -398920 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 412-127 chr18 3333130 3333407 + 3 NA Intergenic Intergenic 17291 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 467-240 chr6 15420411 15420673 + 3 NA intron (NM_004973, intron 3 of 17) L1MEc|LINE|L1 171687 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 521-263 chr8 142299877 142300197 + 3 NA 3' UTR (NM_001366902, exon 10 of 10) 3' UTR (NM_001366902, exon 10 of 10) 101681 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 771-5 chr1 221819288 221819780 + 3 NA Intergenic Intergenic 21132 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 439 chr1 12626732 12626966 + 3 NA Intergenic MIRb|SINE|MIR -8639 NM_004753 9249 Hs.289347 NM_004753 ENSG00000162496 DHRS3 DD83.1|RDH17|Rsdr1|SDR1|SDR16C1|retSDR1 dehydrogenase/reductase 3 protein-coding 435-17 chr1 119403551 119403845 + 3 NA Intergenic L1MC1|LINE|L1 -11233 NM_001166120 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 344-252 chr2 150653480 150653712 + 3 NA Intergenic Intergenic 24699 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 1061-11 chr4 133540256 133540690 + 3 NA Intergenic MER4B|LTR|ERV1 391179 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 341-150 chr14 67719835 67719982 + 3 NA intron (NM_152443, intron 1 of 8) L1ME4b|LINE|L1 18022 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 936-12 chr17 33396226 33396643 + 3 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR -103446 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 386-175 chr2 81738537 81738717 + 3 NA Intergenic Intergenic -271681 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 444-191 chr5 23673994 23674275 + 3 NA Intergenic Intergenic 166479 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 950-29 chr8 54948805 54949380 + 3 NA Intergenic L1MC4|LINE|L1 -152936 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 766-53 chr4 29848198 29848623 + 3 NA Intergenic Intergenic 634118 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 922-16 chr18 78708014 78708528 + 3 NA Intergenic L1MD2|LINE|L1 -272004 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 413-95 chr15 33552400 33552657 + 3 NA intron (NM_001243996, intron 10 of 102) intron (NM_001243996, intron 10 of 102) 241561 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 298-204 chr2 34437576 34437752 + 3 NA Intergenic Intergenic -239893 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 454-252 chr5 22759947 22760280 + 3 NA intron (NM_004061, intron 1 of 14) MLT2D|LTR|ERVL 93231 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 875-11 chr16 10703639 10704184 + 3 NA Intergenic SATR2|Satellite|Satellite -8981 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 532-53 chr12 89751171 89751562 + 3 NA Intergenic Intergenic -42000 NM_001366530 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 662-82 chr6 28158045 28158332 + 3 NA 3' UTR (NM_001278119, exon 7 of 7) 3' UTR (NM_001278119, exon 7 of 7) -3573 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 456-232 chr4 112489299 112489492 + 3 NA Intergenic Intergenic -25984 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 767-33 chr3 5408374 5408774 + 3 NA Intergenic MIRb|SINE|MIR -158319 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 507-211 chr6 19199179 19199412 + 3 NA Intergenic L1PA13|LINE|L1 -18815 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 388-79 chr12 44057424 44057600 + 3 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 221431 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 170-92 chr3 32828285 32828355 + 3 NA intron (NM_001039111, intron 1 of 3) intron (NM_001039111, intron 1 of 3) 10323 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 477-292 chr8 126591274 126591510 + 3 NA Intergenic L2c|LINE|L2 -32914 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 436-273 chr6 159046343 159046630 + 3 NA Intergenic Intergenic -1334 NM_152133 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 610-12 chr1 232324934 232325235 + 3 NA Intergenic Intergenic 190524 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 648-25 chr12 32775277 32775730 + 3 NA Intergenic Intergenic -19606 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 469-103 chr16 35814855 35815132 + 3 NA Intergenic Intergenic 68441 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 286-321 chr4 126817750 126817896 + 3 NA Intergenic L1MEd|LINE|L1 -815134 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 500-133 chr2 80686708 80686933 + 3 NA Intergenic L1MD1|LINE|L1 373441 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 1058-18 chr8 79118519 79119160 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -213349 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 500-305 chr8 121790301 121790503 + 3 NA Intergenic Intergenic -148962 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 663-88 chr5 162720207 162720477 + 3 NA Intergenic Intergenic 652700 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 496-22 chr1 172739738 172739935 + 3 NA Intergenic L1MEf|LINE|L1 80733 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 652-132 chr9 130248967 130249363 + 3 NA Intergenic L1MD|LINE|L1 7778 NR_162140 113219459 NR_162140 MIR12126 - microRNA 12126 ncRNA 367-430 chr7 111836016 111836193 + 3 NA intron (NM_001363540, intron 25 of 52) intron (NM_001363540, intron 25 of 52) 27599 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 525-85 chr16 56058193 56058493 + 3 NA Intergenic L1ME5|LINE|L1 -102312 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 302-58 chr10 108756452 108756579 + 3 NA Intergenic Intergenic -687222 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 435-132 chr2 188899953 188900227 + 3 NA Intergenic Intergenic -74283 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 664-76 chr3 89615855 89616344 + 3 NA Intergenic Intergenic 508478 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 938-2 chr11 50481646 50482310 + 3 NA Intergenic ALR/Alpha|Satellite|centr 72831 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 521-200 chr5 108506916 108507200 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -124960 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 673-81 chr3 152075137 152075657 + 3 NA Intergenic Intergenic 130032 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 617-62 chr2 57708960 57709352 + 3 NA Intergenic Intergenic -198495 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 697-51 chr21 21565579 21565938 + 3 NA Intergenic Intergenic 171561 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 281-410 chr7 31590788 31590982 + 3 NA intron (NM_194300, intron 8 of 12) MIR|SINE|MIR 37883 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 488-61 chr12 13883847 13884120 + 3 NA intron (NM_000834, intron 1 of 12) L1ME1|LINE|L1 96373 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 570-44 chr11 81036657 81037034 + 3 NA Intergenic HERVK22-int|LTR|ERVK -274042 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 450-314 chr8 133875199 133875403 + 3 NA Intergenic L1MB2|LINE|L1 -11195 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 369-247 chr21 14873385 14873600 + 3 NA intron (NR_146322, intron 1 of 3) intron (NR_146322, intron 1 of 3) 45176 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 358-152 chr16 78549343 78549510 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 449772 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 556-48 chr12 19718478 19718805 + 3 NA Intergenic Intergenic 278042 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 361-306 chr3 139074975 139075178 + 3 NA Intergenic L1MA4|LINE|L1 -29109 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 497-277 chr8 86014840 86015113 + 3 NA Intergenic Intergenic 54692 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 311-514 chr8 101887073 101887241 + 3 NA 5' UTR (NM_001040626, exon 4 of 7) 5' UTR (NM_001040626, exon 4 of 7) -96188 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 444-140 chr20 24354969 24355259 + 3 NA Intergenic L1MC4|LINE|L1 -114085 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 447-127 chr2 81534637 81534937 + 3 NA Intergenic Intergenic -67841 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 598-144 chr8 115281553 115281904 + 3 NA Intergenic L1MB1|LINE|L1 386285 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 596-112 chr20 45624472 45624757 + 3 NA intron (NM_147198, intron 1 of 4) L1MA5A|LINE|L1 -5125 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 542-166 chr5 67926736 67927109 + 3 NA Intergenic Intergenic 133709 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 736-43 chr2 213997766 213998224 + 3 NA intron (NR_047660, intron 11 of 14) intron (NR_047660, intron 11 of 14) 239928 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 1335-3 chr7 14084531 14085307 + 3 NA Intergenic L1MEg2|LINE|L1 -93494 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 313-430 chr5 60561737 60561876 + 3 NA Intergenic L1M5|LINE|L1 -65520 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 470-53 chr12 48570656 48570939 + 3 NA promoter-TSS (NM_002289) promoter-TSS (NM_002289) -751 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 511-73 chr15 33483928 33484142 + 3 NA intron (NM_001243996, intron 2 of 102) L1MEf|LINE|L1 173068 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 280-82 chr12 8062441 8062585 + 3 NA intron (NM_004054, intron 1 of 1) intron (NM_004054, intron 1 of 1) 3846 NM_004054 719 Hs.504656 NM_004054 ENSG00000171860 C3AR1 AZ3B|C3AR|HNFAG09 complement C3a receptor 1 protein-coding 416-350 chr9 35030200 35030372 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -10809 NM_001040412 138724 Hs.148250 NM_203299 ENSG00000174038 C9orf131 - chromosome 9 open reading frame 131 protein-coding 593-81 chr2 127180139 127180408 + 3 NA Intergenic L1MEd|LINE|L1 25494 NM_001001665 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 456-133 chr18 6330640 6330827 + 3 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) 28297 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 683-73 chr6 114929307 114929673 + 3 NA Intergenic L1PA16|LINE|L1 714345 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 488-276 chr8 127682330 127682555 + 3 NA Intergenic AluSz6|SINE|Alu 51525 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 546-212 chr6 150509183 150509502 + 3 NA Intergenic MER4D|LTR|ERV1 -90543 NR_138139 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 548-188 chr5 113876839 113877105 + 3 NA Intergenic Intergenic 363278 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 661-81 chr5 94566037 94566368 + 3 NA intron (NM_001145678, intron 2 of 20) intron (NM_001145678, intron 2 of 20) 52402 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 458-209 chr5 117328042 117328237 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -87373 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 536-241 chr8 127232598 127232813 + 3 NA Intergenic L2c|LINE|L2 -11932 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 559-59 chr15 98829908 98830179 + 3 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 45617 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 496-151 chr2 190108853 190109185 + 3 NA Intergenic Intergenic -28758 NM_001042521 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 344-331 chr3 126719456 126719598 + 3 NA intron (NM_032343, intron 1 of 7) intron (NM_032343, intron 1 of 7) 15287 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 538-189 chr5 18144585 18144820 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie 337428 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 592-15 chr10 39130167 39130530 + 3 NA Intergenic ALR/Alpha|Satellite|centr 433752 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 508-208 chr6 51179477 51179815 + 3 NA Intergenic HAL1ME|LINE|L1 360775 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 496-105 chr16 6192907 6193168 + 3 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 173334 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 835-36 chr20 47691676 47692063 + 3 NA intron (NM_198596, intron 4 of 20) intron (NM_198596, intron 4 of 20) 94195 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 689-25 chr13 34019011 34019345 + 3 NA Intergenic Intergenic 201029 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 455-216 chr5 50760447 50760631 + 3 NA intron (NM_024615, intron 5 of 25) intron (NM_024615, intron 5 of 25) 93125 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 736-45 chr20 11467342 11467670 + 3 NA Intergenic L1PB4|LINE|L1 -194123 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 601-130 chr5 169215615 169215958 + 3 NA intron (NM_003062, intron 3 of 35) intron (NM_003062, intron 3 of 35) 47908 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 463-201 chr3 190917567 190917751 + 3 NA Intergenic L1PA15|LINE|L1 39729 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 803-49 chr6 105714144 105714670 + 3 NA Intergenic L1ME1|LINE|L1 -311325 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 624-44 chr15 101127880 101128283 + 3 NA Intergenic MER63A|DNA|hAT-Blackjack 123967 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 803-55 chr8 41738603 41738959 + 3 NA intron (NM_020475, intron 2 of 41) intron (NM_020475, intron 2 of 41) 58841 NM_020476 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 438-237 chr6 47925420 47925611 + 3 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 138447 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 628-22 chr10 36213705 36213957 + 3 NA Intergenic L2a|LINE|L2 435529 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 487-193 chr3 139184202 139184433 + 3 NA Intergenic Intergenic 49205 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 471-266 chr8 90748728 90748970 + 3 NA Intergenic L1P3b|LINE|L1 -42926 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 432-256 chr6 133733884 133734074 + 3 NA intron (NR_109982, intron 4 of 8) L1MB2|LINE|L1 -87168 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 458-242 chr7 113121814 113122067 + 3 NA Intergenic MIR|SINE|MIR -3358 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 658-125 chr8 121067184 121067573 + 3 NA Intergenic L1M4b|LINE|L1 -255332 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 486-207 chr3 102601951 102602153 + 3 NA Intergenic Intergenic 167037 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 759-10 chr10 63952654 63953091 + 3 NA Intergenic Intergenic -430982 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 686-37 chr19 56473814 56474223 + 3 NA 5' UTR (NM_001321356, exon 2 of 7) 5' UTR (NM_001321356, exon 2 of 7) 3327 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 820-40 chr4 124791854 124792450 + 3 NA Intergenic Intergenic -79420 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 439-85 chr14 33892978 33893136 + 3 NA Intergenic L1MA9|LINE|L1 58017 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 416-97 chr12 99047740 99047892 + 3 NA intron (NM_152788, intron 17 of 25) L1MEc|LINE|L1 -45543 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 468-87 chr15 33776384 33776577 + 3 NA intron (NM_001243996, intron 64 of 102) intron (NM_001243996, intron 64 of 102) -192017 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 366-242 chr2 225845893 225846138 + 3 NA Intergenic Intergenic -296779 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 396-120 chr16 5805433 5805618 + 3 NA Intergenic Intergenic 173058 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 383-75 chr12 5356692 5356904 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -75310 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 274-22 chr1 195691590 195691741 + 3 NA Intergenic L1M4|LINE|L1 397050 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 311-444 chr6 125922963 125923131 + 3 NA intron (NM_001199621, intron 12 of 14) L1MC5a|LINE|L1 3792 NM_001199622 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 401-194 chr21 23366474 23366734 + 3 NA intron (NR_040254, intron 3 of 4) intron (NR_040254, intron 3 of 4) 18231 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 456-204 chr3 89701814 89702088 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 594330 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 297-332 chr4 65802965 65803090 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -132532 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 512-175 chr3 147296178 147296389 + 3 NA Intergenic Intergenic 96147 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 535-138 chr2 166750880 166751194 + 3 NA Intergenic Intergenic -137450 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 459-323 chr9 6151248 6151486 + 3 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -63782 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 734-49 chr3 113541231 113541689 + 3 NA intron (NM_001322297, intron 1 of 24) AluSx1|SINE|Alu 8905 NR_136283 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 561-145 chr4 62495494 62495746 + 3 NA Intergenic Intergenic -333855 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 660-26 chr14 44525476 44525790 + 3 NA intron (NR_135257, intron 2 of 2) intron (NR_135257, intron 2 of 2) 18224 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 339-9 chr1 50782065 50782335 + 3 NA intron (NM_007051, intron 4 of 18) Tigger3b|DNA|TcMar-Tigger 178067 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 478-245 chr5 161155160 161155355 + 3 NA Intergenic Intergenic -216631 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 763-12 chr12 16399545 16400025 + 3 NA Intergenic Intergenic 46368 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 817-23 chr2 11949605 11950015 + 3 NA Intergenic L1ME1|LINE|L1 -57306 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 570-42 chr11 78952038 78952279 + 3 NA intron (NM_001098816, intron 6 of 33) L2b|LINE|L2 -377294 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 485-149 chr2 155513211 155513386 + 3 NA Intergenic Intergenic 741633 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 461-31 chr10 43987466 43987632 + 3 NA Intergenic (CTT)n|Simple_repeat|Simple_repeat 75147 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 276-280 chr3 6430398 6430541 + 3 NA Intergenic Intergenic 374980 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 487-163 chr20 18769826 18770115 + 3 NA Intergenic L1MA3|LINE|L1 24012 NR_026884 29075 Hs.584899 NM_014162 LINC00652 HSPC072 long intergenic non-protein coding RNA 652 ncRNA 978-15 chr4 136259276 136259707 + 3 NA Intergenic Intergenic -345811 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 546-186 chr5 25795044 25795345 + 3 NA Intergenic LTR57-int|LTR|ERVL 604241 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 546-175 chr4 93401492 93401833 + 3 NA intron (NM_001286838, intron 8 of 14) intron (NM_001286838, intron 8 of 14) -427091 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 353-490 chr7 71180448 71180639 + 3 NA intron (NM_022479, intron 1 of 10) MIRc|SINE|MIR 48399 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 638-55 chr17 61374719 61375128 + 3 NA intron (NM_001099432, intron 24 of 24) MER112|DNA|hAT-Charlie -7219 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 573-36 chr11 38865300 38865594 + 3 NA Intergenic L1PB1|LINE|L1 216589 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 497-173 chr3 40340047 40340296 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 30464 NM_005875 10289 Hs.315230 NM_005875 ENSG00000114784 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 421-136 chr2 52465556 52465708 + 3 NA Intergenic Intergenic 94984 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 272-73 chr11 55487434 55487597 + 3 NA Intergenic Intergenic -66754 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 377-165 chr18 4356629 4356788 + 3 NA intron (NM_001242761, intron 1 of 11) L2a|LINE|L2 92106 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 447-202 chr4 137076406 137076630 + 3 NA intron (NR_149105, intron 2 of 3) intron (NR_149105, intron 2 of 3) -117238 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 324-199 chr16 35438275 35438448 + 3 NA Intergenic MER31-int|LTR|ERV1 42235 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 1293-6 chr5 36485582 36486379 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -120375 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 523-93 chr16 13481829 13482045 + 3 NA Intergenic MIRb|SINE|MIR -438220 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 701-8 chr10 36487585 36488008 + 3 NA Intergenic Intergenic -638061 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 470-270 chr8 104397636 104397979 + 3 NA intron (NM_001385, intron 7 of 9) MamRep4096|DNA|hAT-Tip100 57981 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 400-43 chr10 125089033 125089295 + 3 NA intron (NM_001321013, intron 1 of 9) intron (NM_001321013, intron 1 of 9) -56294 NR_036178 100423041 NR_036178 ENSG00000264572 MIR4296 - microRNA 4296 ncRNA 390-291 chr5 46154135 46154270 + 3 NA Intergenic ALR/Alpha|Satellite|centr -457822 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 399-121 chr17 69378128 69378355 + 3 NA Intergenic L1ME3B|LINE|L1 -36456 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 513-47 chr11 79927645 79927896 + 3 NA Intergenic MIRb|SINE|MIR -486740 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 559-114 chr22 27152062 27152447 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -35262 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 681-22 chr16 7015208 7015586 + 3 NA intron (NM_001142334, intron 1 of 13) MER5B|DNA|hAT-Charlie 241588 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 598-137 chr8 65937264 65937582 + 3 NA Intergenic (TATAA)n|Simple_repeat|Simple_repeat -77555 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 476-66 chr12 118721776 118722066 + 3 NA Intergenic L2a|LINE|L2 39758 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 915-24 chr5 32679099 32679466 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -11590 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 437-122 chr2 21398488 21398727 + 3 NA Intergenic Intergenic 274621 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 1155-5 chr5 105420340 105420877 + 3 NA Intergenic Intergenic 321134 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 655-90 chr4 85245048 85245437 + 3 NA Intergenic Intergenic -229908 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 478-47 chr11 85421034 85421279 + 3 NA intron (NM_001142699, intron 3 of 27) L1PA7|LINE|L1 206114 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 530-38 chr10 126227961 126228262 + 3 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) 160366 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 468-208 chr3 109902321 109902534 + 3 NA Intergenic MER4E|LTR|ERV1 299599 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 400-193 chr20 51278063 51278256 + 3 NA Intergenic L2c|LINE|L2 174818 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 622-152 chr9 87109717 87110075 + 3 NA Intergenic Intergenic -24671 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 348-54 chr10 56882095 56882248 + 3 NA Intergenic Intergenic 422388 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 760-57 chr5 5756368 5756817 + 3 NA Intergenic Intergenic 333915 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 572-61 chr15 76541865 76542264 + 3 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -44583 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 434-46 chr10 121199777 121200022 + 3 NA Intergenic MamRep1879|DNA|hAT-Tip100? 331415 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 404-8 chr1 55858404 55858627 + 3 NA Intergenic Intergenic 86448 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 166-80 chr3 170630926 170630995 + 3 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -44885 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 520-325 chr9 25504317 25504500 + 3 NA Intergenic Intergenic 174450 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 530-76 chr14 64045244 64045606 + 3 NA intron (NM_015180, intron 45 of 114) intron (NM_015180, intron 45 of 114) 49700 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 427-229 chr6 98680367 98680592 + 3 NA Intergenic Intergenic 151221 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 518-202 chr4 61151589 61151946 + 3 NA intron (NR_147148, intron 3 of 3) intron (NR_147148, intron 3 of 3) 8111 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 218-350 chr9 81209184 81209337 + 3 NA Intergenic MER68|LTR|ERVL 480275 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 541-166 chr4 64768936 64769281 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 235392 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 429-194 chr3 82514737 82514915 + 3 NA Intergenic Intergenic 528684 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 424-169 chr3 11123648 11123860 + 3 NA Intergenic MER33|DNA|hAT-Charlie -13484 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 1167-14 chr20 47070380 47071038 + 3 NA intron (NM_172110, intron 5 of 13) L1MB3|LINE|L1 -96258 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 957-20 chr3 77134848 77135259 + 3 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 37041 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 822-55 chr7 38275299 38275654 + 3 NA Intergenic L2c|LINE|L2 -1829 NM_001003799 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 856-24 chr2 147506065 147506562 + 3 NA Intergenic L1ME4a|LINE|L1 -338204 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 506-75 chr13 81810122 81810352 + 3 NA Intergenic L1MA3|LINE|L1 -583254 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 464-112 chr2 34592016 34592236 + 3 NA Intergenic Intergenic -85431 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 547-42 chr11 113626371 113626597 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 79824 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 542-53 chr14 37689901 37690084 + 3 NA intron (NM_001310135, intron 5 of 32) L1MA2|LINE|L1 -82391 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 706-50 chr3 178413483 178413932 + 3 NA Intergenic Intergenic -5494 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 864-37 chr5 118462264 118462881 + 3 NA intron (NR_104610, intron 9 of 9) AluSg|SINE|Alu 99545 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 546-249 chr8 133794197 133794512 + 3 NA Intergenic Intergenic -17002 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 549-8 chr1 90837060 90837366 + 3 NA intron (NR_147930, intron 1 of 1) intron (NR_147930, intron 1 of 1) -1052 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 288-338 chr5 122289370 122289491 + 3 NA Intergenic Intergenic -22261 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 343-594 chrX 82289740 82289929 + 3 NA Intergenic L1P4|LINE|L1 1087732 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 555-64 chr16 7261435 7261739 + 3 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -71258 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 363-72 chr10 130126143 130126306 + 3 NA Intergenic Intergenic -10151 NM_001199868 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 395-28 chr10 5434083 5434248 + 3 NA intron (NM_001047160, intron 3 of 11) HAL1M8|LINE|L1 -12386 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 682-26 chr12 125565881 125566333 + 3 NA intron (NM_052907, intron 4 of 8) intron (NM_052907, intron 4 of 8) -56345 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 404-179 chr2 187809928 187810079 + 3 NA Intergenic L1MC3|LINE|L1 -255498 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 690-49 chr17 31702751 31703237 + 3 NA Intergenic Intergenic 127583 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 1134-12 chr21 27141784 27142541 + 3 NA Intergenic L2a|LINE|L2 -175074 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 513-268 chr7 111632314 111632518 + 3 NA Intergenic L1MA4A|LINE|L1 -69899 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 498-47 chr11 25421593 25421840 + 3 NA Intergenic MLT2D|LTR|ERVL -767407 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 525-171 chr4 28377102 28377324 + 3 NA Intergenic Intergenic -442369 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 316-135 chr12 49711028 49711154 + 3 NA Intergenic Intergenic -3686 NM_198900 91010 Hs.179838 NM_175736 ENSG00000161791 FMNL3 FHOD3|FRL2|WBP-3|WBP3 formin like 3 protein-coding 527-174 chr3 67975279 67975480 + 3 NA Intergenic Intergenic -16213 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 762-74 chr8 111578756 111579254 + 3 NA Intergenic Intergenic 202366 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 609-42 chr17 72246420 72246719 + 3 NA Intergenic Intergenic -96242 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 618-128 chr8 70099696 70100075 + 3 NA Intergenic L1MEf|LINE|L1 -28633 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 769-9 chr11 102856225 102856545 + 3 NA Intergenic Intergenic -12776 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 610-47 chr14 46392507 46392922 + 3 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -78645 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 558-99 chr2 59057092 59057423 + 3 NA intron (NR_033873, intron 12 of 13) intron (NR_033873, intron 12 of 13) -160451 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 497 chr1 37183116 37183373 + 3 NA Intergenic L1MC2|LINE|L1 21681 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 406-142 chr2 52401040 52401233 + 3 NA intron (NR_135237, intron 10 of 10) intron (NR_135237, intron 10 of 10) 30488 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 295-447 chr7 93194265 93194494 + 3 NA intron (NM_001346642, intron 8 of 9) intron (NM_001346642, intron 8 of 9) 25192 NM_001288810 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 684-75 chr3 96929853 96930196 + 3 NA intron (NM_001080448, intron 2 of 17) L1PA10|LINE|L1 115430 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 447-69 chr14 45488921 45489109 + 3 NA Intergenic L1MA2|LINE|L1 226587 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 548-17 chr1 228385030 228385471 + 3 NA Intergenic L1M2|LINE|L1 11859 NR_106800 102465444 NR_106800 ENSG00000284311 MIR6742 hsa-mir-6742 microRNA 6742 ncRNA 364-43 chr10 15924241 15924401 + 3 NA Intergenic L1M4c|LINE|L1 -63788 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 552-86 chr17 66518622 66519057 + 3 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -101985 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 848-33 chr4 63940930 63941502 + 3 NA Intergenic Intergenic 468234 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 496-260 chr7 50908406 50908729 + 3 NA Intergenic L1MA5|LINE|L1 -115114 NM_001371008 288-259 chr3 55083575 55083716 + 3 NA Intergenic Intergenic -94527 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 607-128 chr6 116947682 116948138 + 3 NA Intergenic Intergenic 70668 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 520-285 chr7 90445713 90446030 + 3 NA Intergenic Intergenic -23768 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 401-239 chr4 146598271 146598461 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -40527 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 695-46 chr2 26045630 26045894 + 3 NA intron (NM_016131, intron 1 of 5) SVA_E|Retroposon|SVA 11678 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 328-72 chr11 5963334 5963475 + 3 NA Intergenic L1MA8|LINE|L1 5090 NM_001146033 390084 Hs.719888 NM_001146033 ENSG00000188691 OR56A5 OR56A5P olfactory receptor family 56 subfamily A member 5 protein-coding 482-96 chr17 49421228 49421486 + 3 NA Intergenic L1MA4A|LINE|L1 -6452 NM_001281715 5245 Hs.514303 NM_002634 ENSG00000167085 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 693-61 chr2 181227390 181227725 + 3 NA intron (NR_130784, intron 2 of 4) intron (NR_130784, intron 2 of 4) 78095 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 424-53 chr12 39869445 39869701 + 3 NA intron (NM_052885, intron 5 of 9) intron (NM_052885, intron 5 of 9) 236508 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 314-279 chr2 60888685 60888826 + 3 NA intron (NM_002908, intron 1 of 10) intron (NM_002908, intron 1 of 10) 7181 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 441-205 chr5 106442870 106443077 + 3 NA Intergenic Intergenic 568041 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 536-65 chr13 53563345 53563566 + 3 NA Intergenic L1ME1|LINE|L1 -251964 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 477-132 chr19 51303476 51303680 + 3 NA Intergenic MER21-int|LTR|ERVL -8270 NM_001101372 402665 NM_001101372 ENSG00000142549 IGLON5 - IgLON family member 5 protein-coding 667-10 chr1 239741739 239742223 + 3 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -22862 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 500-174 chr21 32893597 32893886 + 3 NA Intergenic Intergenic -65147 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 528-19 chr1 180671248 180671528 + 3 NA intron (NR_137330, intron 1 of 12) intron (NR_137330, intron 1 of 12) 39366 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 386-227 chr3 5243660 5243869 + 3 NA Intergenic LTR84b|LTR|ERVL 6491 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 207-250 chr5 155088007 155088095 + 3 NA Intergenic L3|LINE|CR1 74296 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 438-17 chr1 178017756 178018009 + 3 NA intron (NR_151484, intron 3 of 3) L1ME1|LINE|L1 20094 NR_151492 111240474 NM_001356505 CRYZL2P-SEC16B - CRYZL2P-SEC16B readthrough protein-coding 425-264 chr6 115563889 115564089 + 3 NA Intergenic L1PA17|LINE|L1 79846 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 398-100 chr14 52560204 52560444 + 3 NA intron (NM_001353361, intron 1 of 7) L1ME1|LINE|L1 7488 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 453-21 chr10 19689949 19690162 + 3 NA intron (NM_001142308, intron 36 of 39) Helitron2Na_Mam|RC?|Helitron? 38495 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 471-141 chr2 188427922 188428191 + 3 NA intron (NM_016315, intron 2 of 11) MSTA-int|LTR|ERVL-MaLR 130564 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 241-44 chr10 82941300 82941402 + 3 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -708431 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 332-130 chr12 112723700 112723908 + 3 NA intron (NM_001347952, intron 1 of 21) Tigger2b_Pri|DNA|TcMar-Tigger -28628 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 362-167 chr15 35595261 35595525 + 3 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) 49198 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 759-12 chr11 30060125 30060567 + 3 NA Intergenic L2a|LINE|L2 -43316 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 334-228 chr18 65406488 65406733 + 3 NA Intergenic Intergenic -343642 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 415-142 chr2 198865582 198865784 + 3 NA Intergenic Intergenic -490586 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 1045-18 chr5 110305332 110305948 + 3 NA Intergenic L1MA1|LINE|L1 208275 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 272-319 chr4 150911877 150912000 + 3 NA intron (NM_001367550, intron 9 of 56) L1MB2|LINE|L1 103329 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 461-9 chr1 103966365 103966634 + 3 NA Intergenic L1ME1|LINE|L1 -106524 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 413-123 chr18 39438289 39438458 + 3 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 183802 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 784-7 chr10 39042254 39042695 + 3 NA Intergenic Intergenic 345878 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 371-305 chr5 30287831 30288008 + 3 NA Intergenic L1M2|LINE|L1 407359 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1341 chr4 96931649 96932498 + 3 NA Intergenic Intergenic -434853 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 431-202 chr4 83612664 83612938 + 3 NA Intergenic L1MA5|LINE|L1 76693 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 479-192 chr5 45295520 45295779 + 3 NA intron (NM_021072, intron 6 of 7) intron (NM_021072, intron 6 of 7) 400731 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 230-317 chr5 158855923 158856015 + 3 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 241987 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 441-158 chr3 75130543 75130825 + 3 NA Intergenic L1MA9|LINE|L1 -83792 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 237-135 chr16 64810240 64810396 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 311745 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 516-32 chr11 58971960 58972306 + 3 NA intron (NR_033853, intron 5 of 5) L1MB4|LINE|L1 28884 NM_080661 92292 Hs.38085 NM_080661 ENSG00000166840 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase like 1 protein-coding 721-49 chr21 27717447 27717812 + 3 NA Intergenic Intergenic -4750 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 899-23 chr4 63357349 63357882 + 3 NA Intergenic Intergenic 1051835 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 468-310 chr8 57046315 57046546 + 3 NA Intergenic Intergenic -52563 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 459-296 chr8 77570790 77571073 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 120234 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 521-22 chr1 246649313 246649652 + 3 NA intron (NM_152609, intron 9 of 10) intron (NM_152609, intron 9 of 10) -74927 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 352-119 chr12 119053319 119053468 + 3 NA intron (NM_194286, intron 1 of 12) MER113|DNA|hAT-Charlie 71852 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 481-217 chr4 60778647 60778894 + 3 NA Intergenic Intergenic -143849 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 404-322 chr8 105172349 105172580 + 3 NA Intergenic L1M4|LINE|L1 -145974 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 601-12 chr10 36467676 36468070 + 3 NA Intergenic HAL1b|LINE|L1 -657984 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 950-10 chr15 83276061 83276680 + 3 NA intron (NM_001717, intron 1 of 4) intron (NM_001717, intron 1 of 4) 7087 NM_001301206 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 557-178 chr7 4820223 4820489 + 3 NA intron (NM_018059, intron 6 of 14) intron (NM_018059, intron 6 of 14) 17094 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 641-20 chr11 91397086 91397454 + 3 NA Intergenic L2a|LINE|L2 -528068 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 173-82 chr20 34935084 34935202 + 3 NA intron (NM_000178, intron 9 of 12) intron (NM_000178, intron 9 of 12) 20492 NM_001322495 2937 Hs.82327 NM_000178 ENSG00000100983 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 266-89 chr12 59367457 59367608 + 3 NA Intergenic Intergenic -228497 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 376-115 chr15 47005296 47005577 + 3 NA Intergenic L1M1|LINE|L1 -178653 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 224-235 chr4 167950638 167950727 + 3 NA Intergenic L1MEd|LINE|L1 -141855 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 665-95 chr7 82104522 82104803 + 3 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 95485 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 502-131 chr2 19357288 19357594 + 3 NA intron (NM_145260, intron 1 of 2) CpG 1182 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 493-149 chr2 80299155 80299347 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 5501 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 450-182 chr22 33714389 33714663 + 3 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) -9606 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 433-229 chr5 118584409 118584638 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie -11665 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 510-128 chr2 4493780 4494107 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 162279 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 392-70 chr12 105611255 105611412 + 3 NA Intergenic MIR|SINE|MIR -92870 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 400-255 chr4 72155517 72155815 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 116534 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 504-232 chr6 163314554 163314757 + 3 NA intron (NR_028390, intron 4 of 5) intron (NR_028390, intron 4 of 5) 9818 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 315-237 chr2 68488768 68488882 + 3 NA intron (NM_173545, intron 1 of 9) intron (NM_173545, intron 1 of 9) 21240 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 722-59 chr4 79852492 79852855 + 3 NA intron (NR_026555, intron 1 of 1) intron (NR_026555, intron 1 of 1) 25202 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 752-8 chr11 79736660 79736994 + 3 NA Intergenic Intergenic -295797 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 356-178 chr16 17707756 17707952 + 3 NA Intergenic Intergenic -236894 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 637-21 chr11 50628802 50629272 + 3 NA Intergenic ALR/Alpha|Satellite|centr 219890 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 409-59 chr12 118997969 118998121 + 3 NA intron (NM_194286, intron 1 of 12) MIR1_Amn|SINE|MIR 16504 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 426-15 chr1 213553363 213553583 + 3 NA Intergenic L1PA15|LINE|L1 -371276 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 759-60 chr5 158656435 158656782 + 3 NA Intergenic Intergenic -246835 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 581-145 chr5 164403914 164404264 + 3 NA Intergenic Intergenic 63313 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 768-29 chr2 121922800 121923141 + 3 NA Intergenic L1MC5|LINE|L1 167319 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 179-104 chr6 70502143 70502250 + 3 NA intron (NM_020819, intron 10 of 20) intron (NM_020819, intron 10 of 20) -64734 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 542-41 chr12 14206367 14206735 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -159081 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 661-11 chr11 37228866 37229256 + 3 NA Intergenic Intergenic -630782 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 231-58 chr11 93429135 93429309 + 3 NA intron (NM_181645, intron 13 of 13) intron (NM_181645, intron 13 of 13) 98505 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 478-194 chr3 106824093 106824332 + 3 NA Intergenic LTR39|LTR|ERV1 416426 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 434-125 chr19 22084504 22084685 + 3 NA intron (NM_033468, intron 3 of 3) L1MB2|LINE|L1 32110 NM_001316997 113835 Hs.283900 NM_033468 ENSG00000197134 ZNF257 BMZF-4|BMZF4 zinc finger protein 257 protein-coding 365-11 chr1 83662735 83662901 + 3 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 197728 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 595-155 chr8 8624658 8624908 + 3 NA Intergenic L1MB3|LINE|L1 -77154 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 485-179 chr3 35006618 35006903 + 3 NA intron (NR_110817, intron 2 of 3) HAL1ME|LINE|L1 387263 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 396-158 chr2 44737465 44737673 + 3 NA intron (NM_024766, intron 7 of 10) L1MEc|LINE|L1 201319 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 516-275 chrX 22401643 22401937 + 3 NA intron (NR_073010, intron 4 of 11) MLT1H2|LTR|ERVL-MaLR 128877 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 339-545 chr7 119161935 119162053 + 3 NA Intergenic Intergenic 745381 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 485-216 chr5 4747541 4747710 + 3 NA Intergenic Intergenic -25856 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 455-53 chr11 84002635 84002805 + 3 NA intron (NM_001142699, intron 11 of 27) THE1D-int|LTR|ERVL-MaLR 270560 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 734-64 chr5 146725278 146725811 + 3 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 153241 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 465-234 chr5 99915826 99916056 + 3 NA Intergenic Intergenic 381951 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 629-27 chr11 42850729 42851093 + 3 NA Intergenic L1MEc|LINE|L1 418458 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 516-60 chr13 29726449 29726718 + 3 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 78890 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 550-90 chr18 4088394 4088732 + 3 NA intron (NM_001242761, intron 2 of 11) L1MCc|LINE|L1 126210 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 758-76 chr8 118336047 118336531 + 3 NA intron (NM_001101676, intron 4 of 4) L3b|LINE|CR1 -224470 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 534-164 chr3 119656999 119657232 + 3 NA intron (NM_001369919, intron 1 of 3) intron (NM_001369919, intron 1 of 3) 3475 NM_022135 64091 Hs.534383 NM_022135 ENSG00000121577 POPDC2 POP2 popeye domain containing 2 protein-coding 254-58 chr11 68227773 68227947 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger -14212 NM_001300909 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 859-11 chr14 43232096 43232655 + 3 NA Intergenic Intergenic 1274908 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 615-54 chr18 13778431 13778718 + 3 NA Intergenic Intergenic -45575 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 473-281 chr8 121673634 121673959 + 3 NA Intergenic Intergenic -32356 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 524-137 chr21 25477384 25477691 + 3 NA Intergenic L1M5|LINE|L1 -45836 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 394-101 chr14 51973476 51973649 + 3 NA Intergenic Intergenic -15984 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 638-146 chr7 17688413 17688844 + 3 NA Intergenic Intergenic -129719 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 530-101 chr17 60491478 60491811 + 3 NA intron (NM_006380, intron 3 of 12) AluSx1|SINE|Alu 34596 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 751-26 chr18 10079950 10080436 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 166177 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 495-167 chr3 182999584 182999811 + 3 NA Intergenic L1PA13|LINE|L1 -13779 NM_001308101 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 460-22 chr1 227590717 227590888 + 3 NA intron (NR_102302, intron 2 of 5) Harlequin-int|LTR|ERV1 27246 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 732-2 chr1 115521466 115521837 + 3 NA Intergenic MamRep1151|LTR?|LTR? -120319 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 556-28 chr10 103946057 103946377 + 3 NA Intergenic Intergenic -20923 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 396-116 chr15 66879159 66879400 + 3 NA Intergenic Charlie22a|DNA|hAT-Charlie 77236 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 548-235 chr8 102132053 102132363 + 3 NA Intergenic L1MA7|LINE|L1 6776 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 332-206 chr17 72243511 72243688 + 3 NA Intergenic Intergenic -99212 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 1143-16 chr6 62336431 62336970 + 3 NA Intergenic LTR16E2|LTR|ERVL -50473 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 952-26 chr8 36526103 36526639 + 3 NA Intergenic Intergenic -258003 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 283-280 chr3 9605663 9605810 + 3 NA Intergenic L1MB5|LINE|L1 -43769 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 604-115 chr3 156872343 156872692 + 3 NA intron (NM_001004316, intron 3 of 12) L1MA4A|LINE|L1 46164 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 389-10 chr1 80167478 80167770 + 3 NA Intergenic Intergenic -368131 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 678-91 chr5 123915781 123916124 + 3 NA Intergenic Intergenic 370535 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 322-398 chr4 178318351 178318511 + 3 NA Intergenic Intergenic -410495 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 1253-2 chr14 72764906 72765705 + 3 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 127344 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 973-17 chr20 15996713 15997335 + 3 NA intron (NM_001351663, intron 15 of 17) L1MA9|LINE|L1 -11142 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 468-194 chr3 53996936 53997117 + 3 NA Intergenic Intergenic -105167 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 494-185 chr3 114689969 114690184 + 3 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 53449 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 501-230 chr6 122503233 122503427 + 3 NA intron (NM_001270393, intron 3 of 7) intron (NM_001270393, intron 3 of 7) 31413 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 652-29 chr12 31802432 31802715 + 3 NA Intergenic L1MC4|LINE|L1 -10275 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 538-22 chr10 5229420 5229635 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 32690 NM_001818 1109 Hs.567245 NM_001818 ENSG00000198610 AKR1C4 3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA aldo-keto reductase family 1 member C4 protein-coding 379-338 chr8 64951869 64952123 + 3 NA Intergenic L1M4|LINE|L1 -153259 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 320-551 chr8 88535966 88536165 + 3 NA Intergenic Intergenic -208582 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 754-64 chr5 23455321 23455813 + 3 NA Intergenic Intergenic -52042 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 550-252 chrX 90274994 90275239 + 3 NA Intergenic Intergenic 353208 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 837-6 chr12 2526678 2527351 + 3 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 145206 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 537-179 chr4 102293956 102294247 + 3 NA intron (NM_022154, intron 5 of 7) L1ME3Cz|LINE|L1 30211 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 383-113 chr14 65549087 65549265 + 3 NA intron (NM_004480, intron 2 of 9) L1MD3|LINE|L1 78074 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 1254-2 chr19 28765179 28765892 + 3 NA Intergenic L1PBa|LINE|L1 -37841 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 626-136 chr8 80701639 80701988 + 3 NA intron (NM_001033723, intron 2 of 8) L2|LINE|L2 172655 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 536-174 chr4 83502406 83502683 + 3 NA Intergenic Intergenic -17444 NM_139076 84142 Hs.334772 NM_139076 ENSG00000163322 ABRAXAS1 ABRA1|CCDC98|FAM175A abraxas 1, BRCA1 A complex subunit protein-coding 570-66 chr14 84831425 84831644 + 3 NA Intergenic Intergenic -440398 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 620-54 chr18 62287495 62287887 + 3 NA intron (NR_144409, intron 29 of 31) intron (NR_144409, intron 29 of 31) -37596 NM_001270949 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 883-27 chr3 166665223 166665747 + 3 NA Intergenic Intergenic -233198 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 1001-8 chr16 73448162 73448657 + 3 NA Intergenic HAL1b|LINE|L1 61604 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 524-155 chr3 96286628 96286965 + 3 NA Intergenic Intergenic -73168 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 588-2 chr1 35124902 35125278 + 3 NA Intergenic L1MEc|LINE|L1 45705 NM_024772 79830 Hs.471243 NM_024772 ENSG00000197056 ZMYM1 MYM zinc finger MYM-type containing 1 protein-coding 332-578 chr9 118345443 118345625 + 3 NA Intergenic L2|LINE|L2 -334137 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 473-176 chr3 76420130 76420354 + 3 NA Intergenic AluJo|SINE|Alu -619857 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 551-127 chr4 73482 73765 + 3 NA intron (NM_182524, intron 3 of 3) intron (NM_182524, intron 3 of 3) 20302 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 584-60 chr18 41103393 41103729 + 3 NA Intergenic L1MD2|LINE|L1 417116 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 467-310 chrX 145843148 145843421 + 3 NA Intergenic Intergenic 21936 NM_001144008 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 517-38 chr10 125385162 125385372 + 3 NA Intergenic L1PA15|LINE|L1 -189104 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 682-3 chr1 77247268 77247631 + 3 NA Intergenic L1MA5|LINE|L1 -28019 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 781-57 chr6 66100153 66100693 + 3 NA Intergenic MER21A|LTR|ERVL 312544 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 683-32 chr18 5956584 5957068 + 3 NA intron (NM_001365769, intron 16 of 16) L1ME4a|LINE|L1 -60872 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 584-141 chr5 109983995 109984284 + 3 NA Intergenic L1MA9|LINE|L1 100957 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 708-84 chr9 100811863 100812312 + 3 NA Intergenic MIR|SINE|MIR -216640 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 447-157 chr21 24728379 24728713 + 3 NA Intergenic Intergenic -112004 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 623-9 chr1 245960876 245961215 + 3 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 456367 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 437-8 chr1 100315268 100315456 + 3 NA Intergenic AluJr|SINE|Alu -29653 NM_001319211 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 377-381 chr7 104283847 104284008 + 3 NA Intergenic Intergenic -44729 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 607-29 chr11 124052408 124052828 + 3 NA Intergenic L1PA8A|LINE|L1 -13617 NM_001004463 390265 Hs.553761 NM_001004463 ENSG00000182634 OR10G7 OR11-283 olfactory receptor family 10 subfamily G member 7 protein-coding 548-101 chr19 52425777 52426056 + 3 NA Intergenic Intergenic -3232 NM_001291368 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 505-319 chr8 134409395 134409591 + 3 NA Intergenic Intergenic -188578 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 532-149 chr22 21826182 21826470 + 3 NA intron (NM_002745, intron 1 of 8) MIRb|SINE|MIR 41354 NM_138957 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 481-228 chr4 109224905 109225203 + 3 NA intron (NM_198721, intron 3 of 36) MER5A|DNA|hAT-Charlie 77604 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 388-266 chr5 4827395 4827600 + 3 NA Intergenic Intergenic 54016 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 308-32 chr1 168319440 168319583 + 3 NA Intergenic L1MB8|LINE|L1 38634 NM_005149 9095 Hs.716656 NM_005149 ENSG00000143178 TBX19 TBS19|TPIT|dJ747L4.1 T-box transcription factor 19 protein-coding 247-270 chr3 106842728 106842894 + 3 NA Intergenic Intergenic 397827 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 488-123 chr19 57689787 57690068 + 3 NA non-coding (NR_073102, exon 2 of 2) non-coding (NR_073102, exon 2 of 2) 7950 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 487-147 chr2 97975982 97976251 + 3 NA intron (NM_015348, intron 1 of 40) L1ME1|LINE|L1 19832 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 604-11 chr10 32521059 32521337 + 3 NA intron (NR_109826, intron 11 of 16) L1MA2|LINE|L1 75058 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 441-209 chr5 120351702 120351950 + 3 NA Intergenic Intergenic -112452 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 377-4 chr1 49553698 49553894 + 3 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -81711 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 402-284 chr5 125812284 125812447 + 3 NA Intergenic Intergenic 319104 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 326-320 chr3 160044 160185 + 3 NA Intergenic Intergenic -36482 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 268-162 chr18 41318522 41318621 + 3 NA Intergenic (ATATAA)n|Simple_repeat|Simple_repeat 202106 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 299-428 chr7 100959172 100959364 + 3 NA exon (NM_005960, exon 2 of 12) exon (NM_005960, exon 2 of 12) 9734 NM_005960 4584 Hs.703577 NM_005960 ENSG00000169894 MUC3A MUC-3A|MUC3 mucin 3A, cell surface associated protein-coding 676-82 chr3 72226057 72226429 + 3 NA Intergenic L1M4b|LINE|L1 74986 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 366-43 chr10 29277839 29278019 + 3 NA Intergenic Intergenic -11141 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 531-88 chr18 7996943 7997315 + 3 NA intron (NM_002845, intron 7 of 30) L1MA4|LINE|L1 369905 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 447-298 chrUn_GL000216v2 69152 69433 + 3 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 478-24 chr10 65076876 65077083 + 3 NA Intergenic Intergenic -152461 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 388-372 chr9 96762846 96763056 + 3 NA intron (NM_001314060, intron 4 of 4) L1ME3B|LINE|L1 15136 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 460-272 chr7 41526882 41527118 + 3 NA Intergenic Intergenic -166919 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 485-207 chr4 85335937 85336223 + 3 NA Intergenic Intergenic -139070 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 472-240 chr5 10849148 10849362 + 3 NA Intergenic MLT2F|LTR|ERVL -88021 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 666-21 chr12 41770791 41771226 + 3 NA Intergenic Intergenic 6819 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 538-213 chr6 103974797 103975045 + 3 NA Intergenic Intergenic 884625 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 535-258 chr9 99209469 99209785 + 3 NA Intergenic Tigger10|DNA|TcMar-Tigger 12315 NR_024532 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2 alpha-1,3/1,6-mannosyltransferase protein-coding 537-250 chr8 76033577 76033860 + 3 NA Intergenic Intergenic -372936 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 619-14 chr1 221800683 221801039 + 3 NA Intergenic Intergenic 39805 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 707-57 chr2 216585501 216585881 + 3 NA Intergenic Intergenic 21247 NR_110392 101928232 Hs.694592 NR_110392 LINC01280 - long intergenic non-protein coding RNA 1280 ncRNA 225-209 chr3 79231240 79231330 + 3 NA intron (NM_002941, intron 2 of 30) L1PA13|LINE|L1 -180442 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 411-140 chr2 31816123 31816380 + 3 NA Intergenic Intergenic -12271 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 301-120 chr14 51168815 51168964 + 3 NA Intergenic Intergenic -71358 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 454-244 chr4 155676326 155676625 + 3 NA intron (NM_000856, intron 3 of 10) intron (NM_000856, intron 3 of 10) 8813 NM_001130684 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 596-79 chr17 68624983 68625386 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -2970 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 394-141 chr18 5743490 5743621 + 3 NA Intergenic AluJr|SINE|Alu -5264 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 405-9 chr1 83746782 83746998 + 3 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 113656 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 452-231 chr6 55036053 55036249 + 3 NA Intergenic L2a|LINE|L2 -70309 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 451-134 chr21 27449865 27450070 + 3 NA Intergenic Intergenic -272412 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 399-105 chr16 13383092 13383246 + 3 NA Intergenic L2a|LINE|L2 481571 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 365-74 chr11 78924606 78924798 + 3 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -349838 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 514-30 chr10 72773583 72773782 + 3 NA intron (NR_073062, intron 3 of 9) L1MA4|LINE|L1 52653 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 358-298 chr3 97846758 97846898 + 3 NA intron (NM_153605, intron 2 of 21) intron (NM_153605, intron 2 of 21) 24817 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 399-209 chr3 72650913 72651088 + 3 NA Intergenic Intergenic 13249 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 567-82 chr2 33949171 33949535 + 3 NA intron (NR_126403, intron 4 of 5) L2|LINE|L2 -117873 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 447-265 chr8 79108286 79108482 + 3 NA Intergenic Intergenic -223804 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 565-93 chr2 238768395 238768639 + 3 NA Intergenic Intergenic 79390 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 1026-3 chr1 147300851 147301398 + 3 NA Intergenic L1MA8|LINE|L1 57982 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 519-50 chr12 105861755 105862011 + 3 NA Intergenic MIRb|SINE|MIR 155109 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 822-13 chr14 57281865 57282390 + 3 NA exon (NM_018229, exon 4 of 8) exon (NM_018229, exon 4 of 8) 13156 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 224-242 chr5 19818965 19819066 + 3 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 67257 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 470-255 chr7 70971548 70971861 + 3 NA Intergenic Intergenic -160440 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 256-433 chr8 127202712 127202851 + 3 NA Intergenic L1ME3|LINE|L1 -5154 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 826-23 chr17 54868485 54868971 + 3 NA Intergenic L1ME1|LINE|L1 -31963 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 762-3 chr1 173899993 173900442 + 3 NA 3' UTR (NM_001346115, exon 4 of 4) 3' UTR (NM_001346115, exon 4 of 4) 17110 NM_001365052 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 647-38 chr18 4435704 4435965 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 19432 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 434-315 chr9 39016988 39017200 + 3 NA Intergenic L1MC2|LINE|L1 271209 NM_033655 79937 Hs.128474 NM_033655 ENSG00000106714 CNTNAP3 CASPR3|CNTNAP3A contactin associated protein like 3 protein-coding 533-38 chr12 83392102 83392453 + 3 NA Intergenic L1ME2|LINE|L1 705122 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 617-81 chr3 36948199 36948537 + 3 NA Intergenic HAL1|LINE|L1 -3314 NM_001329998 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 518-70 chr12 129993873 129994118 + 3 NA Intergenic Intergenic 48347 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 243-93 chr12 44510317 44510411 + 3 NA intron (NM_006159, intron 20 of 20) MIRb|SINE|MIR 365297 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 668-74 chr4 97337316 97337588 + 3 NA Intergenic L1PA10|LINE|L1 -29474 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 536-132 chr2 175501309 175501645 + 3 NA Intergenic Intergenic -319767 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 2123-2 chr3 28099761 28101008 + 3 NA Intergenic L1M4b|LINE|L1 -141235 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 423-6 chr1 80143992 80144230 + 3 NA Intergenic L1M2|LINE|L1 -391644 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 592-10 chr10 23572046 23572367 + 3 NA Intergenic L1M1|LINE|L1 -122521 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 379-361 chr8 127718947 127719135 + 3 NA intron (NR_117102, intron 1 of 3) intron (NR_117102, intron 1 of 3) 14926 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 466-156 chr20 41610783 41610988 + 3 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 7492 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 725-36 chr2 146295634 146296051 + 3 NA Intergenic L1MCc|LINE|L1 -291215 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 797-57 chr8 48180918 48181427 + 3 NA Intergenic Intergenic 172741 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 456-72 chr12 133175357 133175512 + 3 NA Intergenic L1PB4|LINE|L1 -6061 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 366-72 chr11 23493355 23493505 + 3 NA Intergenic Intergenic -74240 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 650-24 chr13 22409884 22410274 + 3 NA Intergenic Intergenic 199794 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 646-7 chr1 183479768 183480217 + 3 NA intron (NM_001174061, intron 1 of 21) intron (NM_001174061, intron 1 of 21) 7493 NM_001174061 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 427-223 chr6 40650508 40650708 + 3 NA Intergenic Intergenic -63244 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 498-117 chr2 35612156 35612392 + 3 NA Intergenic AluSz6|SINE|Alu 140869 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 483-200 chr5 15661224 15661434 + 3 NA intron (NM_001278317, intron 2 of 3) L1MEc|LINE|L1 -46327 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 826-40 chr21 43201697 43202058 + 3 NA Intergenic L1MEi|LINE|L1 31641 NM_001320719 102724652 Hs.184085 NM_001314050 ENSG00000276076 CRYAA2 CRYAA crystallin alpha A2 protein-coding 175-15 chr1 197634532 197634598 + 3 NA intron (NR_125340, intron 9 of 19) intron (NR_125340, intron 9 of 19) 140915 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 628-101 chr5 17703026 17703364 + 3 NA Intergenic Intergenic -47557 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 1005-4 chr12 3406802 3407351 + 3 NA intron (NM_001256536, intron 1 of 9) THE1C|LTR|ERVL-MaLR 25727 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 554-34 chr10 77343632 77343911 + 3 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 6990 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 469-116 chr18 54048686 54048934 + 3 NA Intergenic Intergenic 173602 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 677-7 chr1 118731185 118731620 + 3 NA Intergenic L1M1|LINE|L1 256941 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 503-145 chr2 34151764 34152180 + 3 NA intron (NR_126403, intron 4 of 5) L1MA1|LINE|L1 84746 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 366-188 chr2 15094221 15094357 + 3 NA Intergenic Intergenic 461572 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 279-52 chr10 80572163 80572359 + 3 NA intron (NM_207372, intron 3 of 6) intron (NM_207372, intron 3 of 6) 31442 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 525-107 chr2 11418447 11418761 + 3 NA Intergenic L1MC2|LINE|L1 24623 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 435-27 chr10 34950354 34950587 + 3 NA Intergenic Intergenic 123813 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 324-551 chr8 130669715 130669918 + 3 NA Intergenic L1MA5|LINE|L1 -226142 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 308-185 chr17 57468011 57468179 + 3 NA intron (NM_001322250, intron 6 of 13) MIRb|SINE|MIR 55502 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 615-129 chr7 55124062 55124389 + 3 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 14386 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 628 chr1 4899530 4899749 + 3 NA Intergenic Intergenic 245030 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 607-136 chr7 69013223 69013576 + 3 NA Intergenic MLT2B2|LTR|ERVL 584225 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 382-96 chr13 86735771 86735933 + 3 NA Intergenic L1MA4A|LINE|L1 -176068 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 556-118 chr2 224058005 224058330 + 3 NA Intergenic Intergenic -18848 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 779-8 chr10 25735260 25735791 + 3 NA Intergenic L1MB5|LINE|L1 83813 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 442-250 chr6 47434168 47434338 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger -43536 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 549-173 chr5 142344224 142344522 + 3 NA intron (NR_120664, intron 1 of 3) intron (NR_120664, intron 1 of 3) 19080 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 434-22 chr1 209040816 209041060 + 3 NA Intergenic Intergenic 68484 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 408-100 chr14 37183214 37183506 + 3 NA Intergenic L1MA8|LINE|L1 -10754 NM_001171170 89874 Hs.730857 NM_030631 ENSG00000183032 SLC25A21 ODC|ODC1 solute carrier family 25 member 21 protein-coding 579-116 chr4 74980235 74980497 + 3 NA intron (NM_015393, intron 1 of 3) L1PA10|LINE|L1 -10004 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 1443-7 chr6 110551733 110552331 + 3 NA Intergenic Intergenic -75419 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 390-109 chr14 83347605 83347752 + 3 NA Intergenic Intergenic 705046 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 519-213 chr7 95148630 95148918 + 3 NA intron (NM_017650, intron 4 of 15) L1MC1|LINE|L1 175758 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 388-362 chr9 22571167 22571344 + 3 NA Intergenic L1PA15|LINE|L1 -74945 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 494-247 chr6 62109217 62109449 + 3 NA intron (NR_146874, intron 2 of 13) L1ME1|LINE|L1 176892 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 483-76 chr15 92409941 92410202 + 3 NA intron (NM_001330416, intron 1 of 4) MIR3|SINE|MIR 16184 NM_001330416 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 424-49 chr11 125387656 125387823 + 3 NA intron (NM_022062, intron 6 of 12) intron (NM_022062, intron 6 of 12) -107475 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 529-19 chr10 105264601 105264951 + 3 NA 3' UTR (NM_014978, exon 27 of 27) 3' UTR (NM_014978, exon 27 of 27) 555557 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 633-48 chr16 55632679 55633033 + 3 NA Intergenic MER50-int|LTR|ERV1 -23208 NM_001172501 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 454-129 chr19 27596160 27596365 + 3 NA Intergenic ALR/Alpha|Satellite|centr -197169 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 354-44 chr10 31549455 31549648 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -149796 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 406-44 chr11 14168355 14168520 + 3 NA intron (NM_006108, intron 6 of 15) HUERS-P1-int|LTR|ERV1 190048 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 423-217 chr5 25968479 25968722 + 3 NA Intergenic MER65-int|LTR|ERV1 777647 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 453-95 chr17 80122254 80122454 + 3 NA Intergenic Intergenic 20773 NM_000152 2548 Hs.1437 NM_000152 ENSG00000171298 GAA LYAG glucosidase alpha, acid protein-coding 300-36 chr10 20222143 20222350 + 3 NA intron (NM_032812, intron 12 of 13) intron (NM_032812, intron 12 of 13) -329724 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 406-300 chr8 116665268 116665481 + 3 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 13274 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 719-92 chrX 134593327 134593823 + 3 NA intron (NM_001316889, intron 1 of 1) L1MDa|LINE|L1 43551 NR_038998 100506757 Hs.130961 NR_038998 LINC00629 LINC00629A|LINC00629B|LINC00629C|LINC00629D long intergenic non-protein coding RNA 629 ncRNA 333-457 chr5 86740236 86740411 + 3 NA Intergenic Intergenic -6495 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 576-191 chrX 147965211 147965567 + 3 NA Intergenic Intergenic -15948 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 685-85 chr7 13658000 13658438 + 3 NA Intergenic LTR16D|LTR|ERVL 328295 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 492-273 chr8 138376779 138376993 + 3 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 120375 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 828-7 chr10 48757111 48757588 + 3 NA intron (NM_020945, intron 12 of 61) L1ME1|LINE|L1 71886 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 542-48 chr12 112778156 112778378 + 3 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -13271 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 378-232 chr2 80369870 80370045 + 3 NA intron (NM_001282599, intron 1 of 11) MLT1D|LTR|ERVL-MaLR 56578 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 713-5 chr1 179507463 179507980 + 3 NA intron (NR_073544, intron 20 of 25) MER63A|DNA|hAT-Blackjack 68227 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 407-275 chr6 53598167 53598350 + 3 NA Intergenic L1MEf|LINE|L1 -24983 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 939-32 chr8 135138164 135138713 + 3 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -95693 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 479-128 chr20 52850079 52850332 + 3 NA Intergenic Intergenic -122153 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 500-290 chr8 67905767 67906063 + 3 NA Intergenic MLT2B4|LTR|ERVL -46131 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 482-140 chr2 226808288 226808669 + 3 NA 5' UTR (NM_001349069, exon 3 of 9) 5' UTR (NM_001349069, exon 3 of 9) 8319 NM_001349069 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 404-305 chr8 35208281 35208527 + 3 NA Intergenic Intergenic -27071 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 516-241 chr7 128195588 128195810 + 3 NA Intergenic L1MEf|LINE|L1 -12173 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 553-52 chr13 28660635 28660875 + 3 NA intron (NM_015932, intron 1 of 5) intron (NM_015932, intron 1 of 5) 1625 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 700-94 chr7 118482868 118483173 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 258316 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 476-276 chr8 129050566 129050795 + 3 NA Intergenic L1ME3A|LINE|L1 -84679 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 410-170 chr20 55725690 55725913 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 279718 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 651-114 chr8 33220970 33221332 + 3 NA Intergenic L1MC4|LINE|L1 251995 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 556-16 chr10 9575314 9575697 + 3 NA Intergenic MLT2D|LTR|ERVL -279912 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 399-265 chr6 64213686 64213850 + 3 NA intron (NM_001292009, intron 31 of 43) MER121|DNA|hAT? 406932 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 942-15 chr2 107483405 107483926 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -45754 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 419-164 chr20 24016982 24017174 + 3 NA Intergenic Intergenic -28299 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 344-393 chr5 106175626 106175808 + 3 NA Intergenic L1MB4|LINE|L1 835297 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 272-452 chr8 103547686 103547884 + 3 NA intron (NM_001348497, intron 1 of 22) L1PA15|LINE|L1 -45875 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 348-66 chr10 110075912 110076110 + 3 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -67630 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 365-324 chr5 91014794 91014950 + 3 NA intron (NR_003149, intron 85 of 89) L1PREC2|LINE|L1 299530 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 521-163 chr3 99907927 99908332 + 3 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -31926 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 1207-9 chr6 154224981 154225925 + 3 NA intron (NM_015553, intron 5 of 11) L1MB5|LINE|L1 104628 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 963-16 chr16 67316980 67317357 + 3 NA intron (NM_001100915, intron 2 of 15) MER33|DNA|hAT-Charlie 9573 NM_001100915 146212 Hs.299127 NM_001100915 ENSG00000168676 KCTD19 - potassium channel tetramerization domain containing 19 protein-coding 450-35 chr10 106031209 106031378 + 3 NA Intergenic Intergenic -108872 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 571-108 chr3 89175808 89176156 + 3 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 68361 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 301-356 chr5 44516159 44516335 + 3 NA Intergenic Intergenic -5965 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 875-19 chr2 153757307 153757861 + 3 NA Intergenic L1MA7|LINE|L1 -114338 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 704-65 chr5 9458975 9459317 + 3 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -52187 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 383-262 chr3 173849819 173850050 + 3 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 70862 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 580-191 chr7 101950401 101950728 + 3 NA intron (NM_001202544, intron 2 of 21) L1MB3|LINE|L1 132938 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 444-294 chrX 149199438 149199723 + 3 NA Intergenic L1PA10|LINE|L1 305726 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 429-100 chr15 61773701 61773958 + 3 NA Intergenic L1MEc|LINE|L1 43911 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 952-7 chr11 133720927 133721535 + 3 NA Intergenic Intergenic 89145 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 439-289 chr8 118474750 118474969 + 3 NA intron (NM_001101676, intron 2 of 4) MSTB1|LTR|ERVL-MaLR -146142 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 330-569 chrX 134116785 134116990 + 3 NA Intergenic L1MB7|LINE|L1 52565 NR_029852 574031 NR_029852 ENSG00000284499 MIR363 MIR-363|MIRN363|hsa-mir-363 microRNA 363 ncRNA 521-122 chr2 107184746 107184999 + 3 NA intron (NR_049853, intron 2 of 3) MER21A|LTR|ERVL 164653 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 370-412 chr7 31868773 31868930 + 3 NA intron (NM_001191059, intron 7 of 18) L1MA4A|LINE|L1 181636 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 561-65 chr14 40289357 40289653 + 3 NA Intergenic MER75|DNA|PiggyBac -665206 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 404-6 chr1 49670273 49670435 + 3 NA intron (NR_136623, intron 2 of 12) L1M4a1|LINE|L1 -198269 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 455-261 chr7 109217449 109217635 + 3 NA Intergenic L1MEd|LINE|L1 -332955 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 794-8 chr10 12911975 12912367 + 3 NA intron (NM_001282658, intron 6 of 6) L1MA8|LINE|L1 89542 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 460-120 chr18 64046652 64046961 + 3 NA Intergenic Intergenic -57285 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 458-106 chr18 6068469 6068761 + 3 NA intron (NM_173464, intron 16 of 19) L1PB2|LINE|L1 -172661 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 554-13 chr1 118129488 118129764 + 3 NA intron (NM_206996, intron 3 of 48) intron (NM_206996, intron 3 of 48) 55602 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 622-100 chr4 146128572 146128930 + 3 NA Intergenic Intergenic -6838 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 555-162 chr5 81136692 81137137 + 3 NA intron (NM_006909, intron 17 of 26) L1MCa|LINE|L1 -96406 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 473-221 chr5 68365404 68365682 + 3 NA Intergenic Intergenic 72966 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 722-43 chr19 36445520 36446025 + 3 NA 3' UTR (NM_001145343, exon 5 of 5) 3' UTR (NM_001145343, exon 5 of 5) 24598 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 525 chr1 40475259 40475561 + 3 NA Intergenic L1MEg|LINE|L1 -1880 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 480-259 chr6 120648968 120649225 + 3 NA Intergenic Intergenic 633917 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 679-68 chr3 2873870 2874226 + 3 NA intron (NM_175607, intron 8 of 24) intron (NM_175607, intron 8 of 24) -18167 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 516-22 chr10 61337362 61337573 + 3 NA Intergenic L3|LINE|CR1 -115172 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 511-283 chrUn_KI270417v1 426 621 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 404-341 chr9 27076715 27076877 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -32345 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 479-63 chr14 66677186 66677534 + 3 NA intron (NM_001024218, intron 1 of 21) L1MA5|LINE|L1 169953 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 779-48 chr6 123870268 123870646 + 3 NA intron (NM_001040214, intron 1 of 6) L2a|LINE|L2 66592 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 504-157 chr21 31829209 31829565 + 3 NA Intergenic Intergenic -43633 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 498-23 chr10 23147389 23147696 + 3 NA Intergenic Intergenic -44770 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 437-233 chr5 166852014 166852277 + 3 NA Intergenic Intergenic 74225 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 347-207 chr2 45572914 45573194 + 3 NA intron (NM_018079, intron 9 of 20) MIR3|SINE|MIR 38213 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 243-267 chr22 33774984 33775124 + 3 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 50068 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 331-444 chr5 168625443 168625668 + 3 NA Intergenic L1MEh|LINE|L1 -46187 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 433-243 chr6 61805235 61805436 + 3 NA intron (NR_146874, intron 6 of 13) THE1C-int|LTR|ERVL-MaLR 231205 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 229-304 chr5 74108751 74108903 + 3 NA Intergenic MIRc|SINE|MIR 199498 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 341-244 chr2 59778192 59778354 + 3 NA Intergenic Intergenic 560565 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 474-181 chr3 64243945 64244142 + 3 NA intron (NM_001370528, intron 1 of 7) intron (NM_001370528, intron 1 of 7) -18577 NM_198859 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 597-138 chrX 40842273 40842710 + 3 NA Intergenic LTR8A|LTR|ERV1 -9295 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 374-198 chr2 123029555 123029775 + 3 NA Intergenic L1M4a1|LINE|L1 43816 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 690-11 chr10 109670196 109670623 + 3 NA Intergenic L1PB3|LINE|L1 252837 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 347-285 chr22 23081196 23081356 + 3 NA intron (NM_002073, intron 1 of 2) Tigger13a|DNA|TcMar-Tigger 10757 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 686-45 chr2 80719471 80719768 + 3 NA Intergenic Intergenic 406240 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 468-80 chr14 57419850 57420130 + 3 NA Intergenic Intergenic 29404 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 212-67 chr11 68478453 68478556 + 3 NA intron (NM_001352362, intron 2 of 24) L1MB8|LINE|L1 17752 NM_001352377 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 492-139 chr2 129089650 129090077 + 3 NA Intergenic MIR|SINE|MIR 184028 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 552-14 chr10 17879824 17880130 + 3 NA intron (NM_002438, intron 19 of 29) intron (NM_002438, intron 19 of 29) 34870 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 326-412 chr5 62900763 62900894 + 3 NA Intergenic Intergenic 322009 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 641-45 chr16 82270908 82271306 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR -100883 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 599-57 chr2 42582426 42582762 + 3 NA intron (NM_001330443, intron 3 of 16) AluJr|SINE|Alu 13962 NM_001330444 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 484-220 chr5 111582679 111582951 + 3 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -70218 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 444-107 chr18 77505535 77505780 + 3 NA Intergenic (TTCTTT)n|Simple_repeat|Simple_repeat 255809 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 315-364 chr5 17659008 17659150 + 3 NA Intergenic L1PB1|LINE|L1 -3441 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 799-28 chr2 70709929 70710245 + 3 NA intron (NM_001185055, intron 1 of 11) intron (NM_001185055, intron 1 of 11) 57628 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 676-21 chr11 100424492 100424889 + 3 NA Intergenic L1M2|LINE|L1 -262598 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 626-141 chr8 109466517 109466875 + 3 NA exon (NM_177531, exon 50 of 78) exon (NM_177531, exon 50 of 78) -73004 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 583-177 chrX 6554047 6554294 + 3 NA Intergenic Intergenic -19052 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 419-144 chr2 79776704 79776938 + 3 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 89762 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 506-27 chr1 215496702 215496968 + 3 NA Intergenic Intergenic -70469 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 604-30 chr11 92132680 92132895 + 3 NA Intergenic LTR16A1|LTR|ERVL -92247 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 448-33 chr10 52833983 52834170 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -62376 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 664-3 chr1 34507829 34508266 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 161647 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 282-473 chr8 139379853 139380018 + 3 NA Intergenic Intergenic 323188 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 856-43 chr6 155533166 155533695 + 3 NA Intergenic L1MEd|LINE|L1 18586 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 473-164 chr21 25973150 25973338 + 3 NA intron (NM_001136131, intron 9 of 15) L1MEc|LINE|L1 167146 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 924-15 chr12 126833838 126834463 + 3 NA Intergenic L1PA16|LINE|L1 40540 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 652-112 chr7 154705231 154705602 + 3 NA intron (NR_157196, intron 7 of 25) intron (NR_157196, intron 7 of 25) -223101 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 588-137 chr6 103662924 103663136 + 3 NA Intergenic Intergenic 1196516 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 687-127 chr9 75807592 75808038 + 3 NA Intergenic Intergenic -82829 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 336-125 chr12 31910403 31910628 + 3 NA Intergenic AluSp|SINE|Alu -23312 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 692-19 chr12 14611440 14611880 + 3 NA TTS (NM_004963) TTS (NM_004963) -43777 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 485-115 chr19 30336680 30336978 + 3 NA Intergenic Intergenic -35555 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 461-244 chr7 19608237 19608515 + 3 NA Intergenic L1MB3|LINE|L1 97060 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 884-8 chr12 107284131 107284690 + 3 NA Intergenic L2c|LINE|L2 -34024 NM_001347943 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 507-24 chr1 237346787 237347003 + 3 NA intron (NM_001035, intron 3 of 104) intron (NM_001035, intron 3 of 104) -124224 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 924-3 chr1 92621629 92622172 + 3 NA intron (NM_001350198, intron 16 of 19) AluSg7|SINE|Alu -134975 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 401-230 chr4 72156256 72156572 + 3 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 117282 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 546-72 chr14 73375787 73376054 + 3 NA intron (NM_001005743, intron 2 of 12) L1MC|LINE|L1 82660 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 609-139 chr8 113648056 113648384 + 3 NA Intergenic L1ME3G|LINE|L1 -211281 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 616-40 chr14 29841657 29842003 + 3 NA intron (NM_001330069, intron 1 of 18) Tigger3b|DNA|TcMar-Tigger 85266 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 466-226 chr6 64250290 64250480 + 3 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 443549 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 454-105 chr15 67310192 67310377 + 3 NA intron (NM_001322475, intron 3 of 17) Charlie15b|DNA|hAT-Charlie -55086 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 474-121 chr19 23722210 23722524 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 -35155 NM_138330 171392 Hs.264345 NM_138330 ENSG00000197372 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 296-236 chr2 114813557 114813705 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 19917 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 999-13 chr7 110204820 110205301 + 3 NA Intergenic L1MA2|LINE|L1 -244847 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 658-76 chr3 6304667 6305148 + 3 NA Intergenic L1PA16|LINE|L1 500542 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 370-295 chr22 27049165 27049378 + 3 NA 3' UTR (NM_001318329, exon 2 of 2) 3' UTR (NM_001318329, exon 2 of 2) 11247 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 445-22 chr10 26507564 26507732 + 3 NA intron (NM_019043, intron 6 of 14) intron (NM_019043, intron 6 of 14) 69307 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 500-270 chr7 45965280 45965545 + 3 NA Intergenic Intergenic -44140 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 365-299 chr4 111694305 111694443 + 3 NA Intergenic Intergenic -451080 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 495-247 chr8 58214706 58214987 + 3 NA Intergenic L1M2|LINE|L1 57255 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 526-62 chr12 76978788 76979005 + 3 NA Intergenic L1MA9|LINE|L1 86673 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 835-45 chr5 13886861 13887343 + 3 NA intron (NM_001369, intron 17 of 78) intron (NM_001369, intron 17 of 78) 57378 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 532-71 chr14 72256838 72257180 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -259811 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 915-15 chr21 45036528 45037015 + 3 NA Intergenic HAL1ME|LINE|L1 -32044 NR_024089 378825 Hs.534828 NR_024089 ENSG00000275874 PICSAR C21orf113|LINC00162|NCRNA00162|NLC1-C|NLC1C|PRED74 P38 inhibited cutaneous squamous cell carcinoma associated lincRNA ncRNA 565-15 chr10 62971045 62971295 + 3 NA Intergenic Intergenic -152003 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 432-202 chr4 83343721 83343938 + 3 NA Intergenic L1MC5|LINE|L1 -8676 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 272-324 chr5 380267 380431 + 3 NA intron (NM_020731, intron 4 of 11) L1MC4|LINE|L1 62811 NR_126522 116349 Hs.446702 NM_138464 ENSG00000221990 EXOC3-AS1 C5orf55 EXOC3 antisense RNA 1 ncRNA 464-216 chr6 66311179 66311413 + 3 NA Intergenic Intergenic 523417 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 517-189 chr4 41373264 41373555 + 3 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 12602 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 498-286 chr9 22355621 22355845 + 3 NA Intergenic MIRb|SINE|MIR -91091 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 511-269 chr8 130671971 130672250 + 3 NA Intergenic L2a|LINE|L2 -228436 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 818-33 chr22 22831118 22831583 + 3 NA Intergenic L1MC4a|LINE|L1 8574 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 429-69 chr12 42892776 42893042 + 3 NA Intergenic Intergenic 200693 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 802-70 chr8 122529699 122530162 + 3 NA intron (NR_131202, intron 2 of 3) L2b|LINE|L2 38714 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 488-206 chr5 33230782 33231120 + 3 NA intron (NR_147008, intron 1 of 3) intron (NR_147008, intron 1 of 3) 1216 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 558-132 chr3 31281905 31282137 + 3 NA Intergenic MIRb|SINE|MIR -120234 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 404-11 chr1 80571225 80571519 + 3 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 35617 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 981-6 chr13 22300543 22301229 + 3 NA Intergenic L1MEc|LINE|L1 90601 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 224-296 chr7 40928420 40928552 + 3 NA Intergenic L1MEi|LINE|L1 51453 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 298-199 chr2 18403719 18403872 + 3 NA Intergenic Intergenic 156858 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 526-179 chr4 32084022 32084330 + 3 NA intron (NR_125936, intron 1 of 2) L1PB3|LINE|L1 -61754 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 332-7 chr1 58275036 58275199 + 3 NA Intergenic L1MB2|LINE|L1 -24570 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 544-136 chr20 23530237 23530637 + 3 NA intron (NR_001279, intron 2 of 3) L1MA9|LINE|L1 11291 NR_001279 164380 Hs.400007 NR_001279 ENSG00000204663 CST13P CSTT|CTES6 cystatin 13, pseudogene pseudo 927-12 chr4 116201830 116202547 + 3 NA Intergenic Intergenic -97537 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 662-42 chr19 58211733 58212046 + 3 NA intron (NM_133502, intron 7 of 7) intron (NM_133502, intron 7 of 7) -16792 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 281-211 chr2 77847921 77848129 + 3 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -67909 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 462-47 chr11 50520954 50521133 + 3 NA Intergenic ALR/Alpha|Satellite|centr 111896 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 461-63 chr12 41149756 41149924 + 3 NA Intergenic Arthur1A|DNA|hAT-Tip100 -38480 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 834-23 chr2 154347623 154348064 + 3 NA intron (NM_052917, intron 9 of 12) MIR|SINE|MIR 109595 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 352-567 chr9 117588415 117588565 + 3 NA Intergenic Intergenic -60116 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 342-569 chrX 62835628 62835833 + 3 NA Intergenic Intergenic 515602 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 344-204 chr18 78425480 78425643 + 3 NA Intergenic Intergenic -431834 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 510-199 chr4 32178801 32179044 + 3 NA Intergenic L1M4c|LINE|L1 -156500 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 408-332 chr8 60813446 60813654 + 3 NA intron (NM_017780, intron 7 of 37) L1MC4a|LINE|L1 72291 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 403-217 chr4 52092722 52092934 + 3 NA intron (NM_001346103, intron 7 of 8) L1PA13|LINE|L1 41524 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 434-206 chr4 61081081 61081363 + 3 NA Intergenic Intergenic -62434 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 669-84 chr5 5545496 5545956 + 3 NA Intergenic L1ME3A|LINE|L1 123049 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 556-45 chr12 14506882 14507135 + 3 NA exon (NM_024829, exon 9 of 11) exon (NM_024829, exon 9 of 11) -60724 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 853-7 chr14 52575493 52576155 + 3 NA intron (NM_001353361, intron 1 of 7) MIR3|SINE|MIR 22988 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 498-28 chr10 48935898 48936186 + 3 NA intron (NM_020945, intron 47 of 61) intron (NM_020945, intron 47 of 61) -21807 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 500-153 chr2 156089390 156089710 + 3 NA intron (NR_110250, intron 1 of 3) L1MC1|LINE|L1 165381 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 237-338 chr6 160406807 160406888 + 3 NA intron (NM_021977, intron 2 of 10) intron (NM_021977, intron 2 of 10) 58469 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 788-2 chr10 29833736 29834258 + 3 NA Intergenic L3|LINE|CR1 -97061 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 606-89 chr2 153117562 153117944 + 3 NA Intergenic Intergenic 361009 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 645-14 chr11 35338099 35338465 + 3 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 81276 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 462-153 chr2 190658508 190658709 + 3 NA promoter-TSS (NM_001321315) promoter-TSS (NM_001321315) -550 NM_001321314 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 747-67 chr8 82150473 82150730 + 3 NA Intergenic Intergenic -308315 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 653-26 chr11 97185291 97185578 + 3 NA Intergenic MER33|DNA|hAT-Charlie 677009 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 1080-2 chr1 118430838 118431469 + 3 NA Intergenic Intergenic -245925 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 634-157 chr8 136574953 136575278 + 3 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 44317 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 523-60 chr11 131823440 131823771 + 3 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -86319 NM_001352009 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 382-420 chr8 123995912 123996159 + 3 NA intron (NM_001039112, intron 12 of 40) L1M1|LINE|L1 44747 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 629-83 chr3 118040127 118040365 + 3 NA Intergenic L1MA9|LINE|L1 -349321 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 796-61 chrX 58410175 58410592 + 3 NA Intergenic ALR/Alpha|Satellite|centr -499750 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 579-119 chr4 98755921 98756190 + 3 NA Intergenic L1ME3Cz|LINE|L1 97153 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 781-69 chr9 73361835 73362262 + 3 NA Intergenic Intergenic 210183 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 280-77 chr11 105952431 105952545 + 3 NA intron (NR_046356, intron 14 of 16) intron (NR_046356, intron 14 of 16) 69752 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 460-147 chr2 123147352 123147643 + 3 NA Intergenic L1MB5|LINE|L1 -74016 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 496-228 chr6 13075239 13075431 + 3 NA intron (NM_001322308, intron 4 of 13) MIR|SINE|MIR 61781 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 437-51 chr12 40551031 40551314 + 3 NA intron (NM_173600, intron 158 of 173) L1PA16|LINE|L1 -141267 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 494-56 chr12 114801875 114802128 + 3 NA Intergenic L1MC5a|LINE|L1 -117826 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 588-113 chr4 98501142 98501422 + 3 NA intron (NM_005723, intron 2 of 7) intron (NM_005723, intron 2 of 7) 157329 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 542-84 chr18 61406959 61407300 + 3 NA intron (NM_031891, intron 1 of 11) MER67C|LTR|ERV1 73699 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 559-170 chr7 29761227 29761553 + 3 NA Intergenic Intergenic -45164 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 1069-14 chrX 85431330 85431821 + 3 NA Intergenic L2c|LINE|L2 -51910 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 579-138 chr6 41289038 41289263 + 3 NA Intergenic Intergenic -2405 NR_136332 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 351-487 chr8 81482459 81482683 + 3 NA intron (NM_001442, intron 1 of 3) intron (NM_001442, intron 1 of 3) 662 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 358-351 chr4 169376797 169376946 + 3 NA Intergenic L1MA4|LINE|L1 -105915 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 623-125 chr8 26141268 26141600 + 3 NA Intergenic (GA)n|Simple_repeat|Simple_repeat -96021 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 323-534 chr8 54229325 54229453 + 3 NA Intergenic L1MA3|LINE|L1 94148 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 285-373 chr6 155251923 155252059 + 3 NA exon (NM_012454, exon 22 of 26) exon (NM_012454, exon 22 of 26) -12022 NM_001001346 49861 Hs.567491 NM_001001346 ENSG00000171217 CLDN20 - claudin 20 protein-coding 337-435 chr5 25434373 25434587 + 3 NA Intergenic Intergenic 243527 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 715-92 chr9 28252993 28253489 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 466064 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 471-6 chr1 76971489 76971791 + 3 NA intron (NM_001320274, intron 2 of 2) L1MEg|LINE|L1 -88503 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 158-60 chr2 157585363 157585426 + 3 NA intron (NM_001111031, intron 2 of 8) intron (NM_001111031, intron 2 of 8) 12166 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 393-350 chr8 64323619 64323844 + 3 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 44827 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 305-479 chr6 93597471 93597602 + 3 NA Intergenic L1MCc|LINE|L1 -106481 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 460-284 chr8 68953290 68953478 + 3 NA intron (NR_039986, intron 3 of 4) L1ME2|LINE|L1 150806 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 525-207 chr5 141290972 141291266 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 12930 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 458-160 chr21 44826318 44826589 + 3 NA Intergenic Intergenic -8324 NM_001286416 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 765-43 chr3 166573502 166573827 + 3 NA Intergenic Intergenic -325019 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 471-49 chr11 79348471 79348764 + 3 NA intron (NM_001098816, intron 1 of 33) MLT1B|LTR|ERVL-MaLR 53492 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 935-12 chr14 80795098 80795518 + 3 NA intron (NM_152446, intron 13 of 24) intron (NM_152446, intron 13 of 24) 146430 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 755-21 chr14 72360283 72360615 + 3 NA intron (NM_001370288, intron 3 of 16) AluYm1|SINE|Alu -156371 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 615-123 chr6 86277086 86277450 + 3 NA Intergenic Intergenic -598535 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 821-5 chr1 236648756 236649103 + 3 NA Intergenic Intergenic -37525 NM_001103 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 912-31 chr3 84859449 84859968 + 3 NA intron (NR_033860, intron 7 of 20) AluSz|SINE|Alu 9867 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 379-181 chr2 226008724 226008904 + 3 NA Intergenic L2c|LINE|L2 -133980 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 586-106 chr3 179035276 179035633 + 3 NA intron (NM_152240, intron 3 of 6) L2a|LINE|L2 36355 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 616-91 chr2 183418714 183419077 + 3 NA Intergenic L1PA8|LINE|L1 294452 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 700-91 chr6 140375370 140375961 + 3 NA Intergenic Intergenic 170413 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 368-356 chr5 30524971 30525127 + 3 NA Intergenic Intergenic 644489 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 407-114 chr17 65306778 65306968 + 3 NA Intergenic L1MC4|LINE|L1 -150668 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 283-354 chr5 33002290 33002462 + 3 NA Intergenic L1MEc|LINE|L1 54933 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 316-265 chr2 74218585 74218781 + 3 NA 3' UTR (NM_133478, exon 31 of 31) 3' UTR (NM_133478, exon 31 of 31) 20068 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 478-221 chr4 136076552 136076757 + 3 NA Intergenic MIR|SINE|MIR -162974 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 679-66 chr21 30377361 30377636 + 3 NA Intergenic AluJr4|SINE|Alu -2120 NR_036221 100422891 NR_036221 ENSG00000265007 MIR4327 - microRNA 4327 ncRNA 647-69 chr3 175546689 175547024 + 3 NA intron (NM_207015, intron 9 of 13) L1PA13|LINE|L1 177316 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 369-105 chr14 40804369 40804577 + 3 NA Intergenic Intergenic -150238 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 702-84 chr5 180251282 180251660 + 3 NA intron (NM_001364608, intron 6 of 12) MER91B|DNA|hAT-Tip100 29137 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 667-36 chr16 79576259 79576773 + 3 NA Intergenic Intergenic 24221 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 379-186 chr20 25078471 25078697 + 3 NA TTS (NM_199425) TTS (NM_199425) 3795 NM_199425 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 476-70 chr13 34711773 34711972 + 3 NA Intergenic Kanga1|DNA|TcMar-Tc2 -71187 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 805 chr1 40430552 40431168 + 3 NA Intergenic AluSz|SINE|Alu -19204 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 470-56 chr12 82230193 82230436 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 128073 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 362-362 chr5 155223055 155223246 + 3 NA Intergenic Intergenic 209395 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 365-17 chr1 111068075 111068201 + 3 NA Intergenic L1MA4A|LINE|L1 -71245 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 445-187 chr4 30360536 30360732 + 3 NA Intergenic L1PA15|LINE|L1 -359735 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 260-182 chr18 32809357 32809514 + 3 NA Intergenic LTR78|LTR|ERV1 -36412 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 793-37 chr4 49642173 49642790 + 3 NA Intergenic (GAATG)n|Satellite|Satellite 655839 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 469-168 chr22 45853610 45853810 + 3 NA Intergenic FLAM_A|SINE|Alu 93186 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 534-152 chr22 27229156 27229449 + 3 NA Intergenic Intergenic -4623 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 442-100 chr17 14769599 14769809 + 3 NA Intergenic LTR41|LTR|ERVL -245101 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 505-142 chr2 49006073 49006326 + 3 NA intron (NM_000145, intron 4 of 9) MLT2A2|LTR|ERVL -53404 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 370-67 chr10 109502517 109502691 + 3 NA Intergenic L1MC4|LINE|L1 420642 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 242-343 chr6 63807837 63807936 + 3 NA intron (NR_157848, intron 1 of 1) intron (NR_157848, intron 1 of 1) 1050 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 960-19 chr2 5397084 5397841 + 3 NA Intergenic Intergenic 293656 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 728-49 chr2 123153578 123154051 + 3 NA Intergenic Intergenic -80333 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 409-195 chr3 37248128 37248339 + 3 NA intron (NM_001172713, intron 1 of 22) AluJr|SINE|Alu -4038 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 572-42 chr12 66022645 66022859 + 3 NA TTS (NR_106722) TTS (NR_106722) 974 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 811-20 chr16 82465321 82465870 + 3 NA Intergenic Intergenic -161374 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 633-43 chr14 60018810 60019184 + 3 NA intron (NR_075071, intron 25 of 32) intron (NR_075071, intron 25 of 32) -72914 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 411-3 chr1 50239237 50239515 + 3 NA Intergenic MIRb|SINE|MIR 129543 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 450-155 chr2 167481089 167481323 + 3 NA Intergenic Intergenic 293834 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 542-49 chr13 30935582 30935910 + 3 NA intron (NM_001353390, intron 1 of 4) MER52C|LTR|ERV1 3090 NM_001353388 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 494-287 chr8 82506953 82507298 + 3 NA Intergenic L2a|LINE|L2 -404979 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 416-343 chr8 127862762 127862949 + 3 NA intron (NR_003367, intron 1 of 8) L1M5|LINE|L1 66893 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 501-150 chr22 47269958 47270242 + 3 NA Intergenic Intergenic -75471 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 262-371 chr6 55153670 55153815 + 3 NA intron (NM_001526, intron 1 of 7) intron (NM_001526, intron 1 of 7) 47282 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 369-119 chr14 69104935 69105092 + 3 NA intron (NM_003861, intron 5 of 8) L1MC5|LINE|L1 47586 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 428-251 chr6 40153953 40154223 + 3 NA Intergenic Intergenic 201918 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 948-28 chr4 131026285 131026627 + 3 NA Intergenic Intergenic 650095 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 408-114 chr15 67580515 67580747 + 3 NA intron (NM_001206804, intron 3 of 21) intron (NM_001206804, intron 3 of 21) 31537 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 439-192 chr3 139726967 139727258 + 3 NA Intergenic L2b|LINE|L2 -49062 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 355-414 chr5 125261863 125262026 + 3 NA intron (NR_109882, intron 4 of 5) L1M5|LINE|L1 225113 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 460-126 chr19 36513872 36514063 + 3 NA 3' UTR (NM_001166037, exon 3 of 3) 3' UTR (NM_001166037, exon 3 of 3) 14304 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 412-123 chr17 65340044 65340241 + 3 NA Intergenic L1MC3|LINE|L1 -117399 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 511-164 chr3 10793129 10793299 + 3 NA Intergenic MIRb|SINE|MIR -23014 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 708-70 chr7 1391121 1391606 + 3 NA Intergenic Intergenic 68107 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 427-22 chr10 49202203 49202516 + 3 NA Intergenic L1M5|LINE|L1 -13968 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 604-145 chr6 164415458 164415878 + 3 NA Intergenic Intergenic 406395 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 483-164 chr3 54647789 54648012 + 3 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -8043 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 216-289 chr5 120206456 120206545 + 3 NA Intergenic L1MDa|LINE|L1 -257778 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 1203-9 chr3 96751470 96752194 + 3 NA Intergenic Intergenic -62762 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 508-168 chr4 57960089 57960323 + 3 NA Intergenic MamRep137|DNA|TcMar-Tigger 534334 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 568-69 chr16 17755431 17755755 + 3 NA Intergenic Intergenic -284633 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 545-139 chr3 62737902 62738236 + 3 NA intron (NM_003716, intron 3 of 29) L2a|LINE|L2 137347 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 426-197 chr4 29217720 29217967 + 3 NA intron (NR_146996, intron 2 of 2) intron (NR_146996, intron 2 of 2) 3551 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 783-28 chr15 55025023 55025385 + 3 NA Intergenic AluSz6|SINE|Alu -31543 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 296-299 chr3 89538160 89538337 + 3 NA Intergenic L1M5|LINE|L1 430627 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 350-507 chr8 40485579 40485796 + 3 NA Intergenic Intergenic -142324 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 211-326 chr9 90725975 90726151 + 3 NA Intergenic LTR81A|LTR|Gypsy -75537 NM_001174168 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 554-55 chr12 14610329 14610618 + 3 NA intron (NR_120465, intron 2 of 5) L1M1|LINE|L1 -42590 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 562-11 chr1 184740362 184740680 + 3 NA intron (NM_025191, intron 2 of 19) Tigger6a|DNA|TcMar-Tigger 14337 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 593-164 chr9 92340370 92340803 + 3 NA intron (NM_001286969, intron 2 of 6) MER11C|LTR|ERVK 14633 NM_001012267 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 606-163 chr8 99585613 99585927 + 3 NA intron (NM_017890, intron 33 of 61) L1ME1|LINE|L1 -48909 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 358-332 chr4 58064324 58064552 + 3 NA Intergenic Intergenic 471890 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 619-55 chr16 14026093 14026417 + 3 NA Intergenic L1MD2|LINE|L1 -5178 NR_110915 101927348 Hs.569621 NR_110915 ENSG00000261856 LINC02186 - long intergenic non-protein coding RNA 2186 ncRNA 540-111 chr2 71463953 71464219 + 3 NA intron (NM_003494, intron 1 of 54) intron (NM_003494, intron 1 of 54) -2613 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 386-90 chr14 46242350 46242531 + 3 NA intron (NR_102702, intron 3 of 3) L2b|LINE|L2 178281 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 524-15 chr1 181690791 181691106 + 3 NA intron (NM_001205293, intron 7 of 47) L1MEd|LINE|L1 207431 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 362-383 chr6 133830534 133830680 + 3 NA intron (NR_027030, intron 1 of 2) intron (NR_027030, intron 1 of 2) 9460 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 290-208 chr2 69002228 69002383 + 3 NA Intergenic HAL1|LINE|L1 -10839 NM_053034 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 335-304 chr20 53300224 53300398 + 3 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 115028 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 672-115 chr8 137360049 137360446 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 53341 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 443-141 chr2 11418823 11419076 + 3 NA Intergenic Intergenic 24968 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 514-191 chr3 105916969 105917142 + 3 NA Intergenic L1M3b|LINE|L1 -47654 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 804-43 chr3 144166791 144167084 + 3 NA Intergenic AluSq2|SINE|Alu 193856 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 822-49 chr5 153428950 153429351 + 3 NA Intergenic MIRc|SINE|MIR -61374 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 254-321 chr5 125873109 125873286 + 3 NA Intergenic LTR1D1|LTR|ERV1 -306380 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 558-88 chr19 53325382 53325696 + 3 NA Intergenic MER21C|LTR|ERVL -8180 NM_001321524 91664 Hs.720672 NM_138374 ENSG00000213799 ZNF845 - zinc finger protein 845 protein-coding 637-43 chr15 70390784 70391078 + 3 NA Intergenic L1ME2|LINE|L1 114997 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 401-195 chr21 35288808 35289004 + 3 NA Intergenic Intergenic -239608 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 342-526 chr8 117636813 117637012 + 3 NA Intergenic Intergenic 116199 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 587-83 chr2 217268282 217268560 + 3 NA Intergenic MIR3|SINE|MIR -14312 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 1371 chr6 81630193 81631095 + 3 NA Intergenic L1MEd|LINE|L1 122037 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 521-127 chr2 132979257 132979493 + 3 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 63818 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 547-12 chr1 225595380 225595752 + 3 NA intron (NM_001008493, intron 1 of 14) intron (NM_001008493, intron 1 of 14) 57557 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 355-427 chr6 27980795 27980935 + 3 NA Intergenic Intergenic 23624 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 520-156 chr2 151696316 151696600 + 3 NA intron (NM_001271208, intron 17 of 182) intron (NM_001271208, intron 17 of 182) 38018 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 498-202 chr4 165959791 165960115 + 3 NA intron (NM_001204760, intron 1 of 9) L1PA16|LINE|L1 86716 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 404-314 chr8 84227860 84228074 + 3 NA intron (NM_001354323, intron 1 of 7) L2c|LINE|L2 43301 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 617-29 chr13 63265133 63265504 + 3 NA intron (NR_126409, intron 2 of 6) L1M5|LINE|L1 62776 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 525-195 chr5 30801821 30802098 + 3 NA Intergenic Intergenic -391727 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 392-157 chr2 136887433 136887675 + 3 NA intron (NM_001316349, intron 2 of 27) MSTB|LTR|ERVL-MaLR 122009 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 665-15 chr10 82837967 82838388 + 3 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -605257 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 598-56 chr17 68331455 68331803 + 3 NA intron (NM_001352899, intron 2 of 12) AluSx1|SINE|Alu 39494 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 245-250 chr4 34418180 34418305 + 3 NA Intergenic (ACATAT)n|Simple_repeat|Simple_repeat -148495 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 519-126 chr2 214067826 214068060 + 3 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) 309876 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 456-238 chr4 160051640 160051803 + 3 NA Intergenic Intergenic -273937 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 534-227 chr6 148047676 148047909 + 3 NA Intergenic L1MEd|LINE|L1 -224536 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 398-305 chr6 124290001 124290226 + 3 NA intron (NM_001040214, intron 2 of 6) intron (NM_001040214, intron 2 of 6) 7108 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 510-80 chr14 80188184 80188450 + 3 NA Intergenic Intergenic -23102 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 982 chr1 164365909 164366456 + 3 NA Intergenic L1MCc|LINE|L1 -193178 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 572-83 chr2 35356841 35357204 + 3 NA Intergenic Intergenic -114383 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 485-129 chr2 40684805 40685047 + 3 NA Intergenic L1PA7|LINE|L1 -172491 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 430-179 chr21 22509917 22510066 + 3 NA Intergenic L1M5|LINE|L1 411374 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 396-386 chrX 96207355 96207544 + 3 NA Intergenic L1MA1|LINE|L1 130453 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 408-190 chr20 61869007 61869192 + 3 NA intron (NM_001252339, intron 5 of 14) Charlie18a|DNA|hAT-Charlie 84563 NR_031658 100302168 NR_031658 ENSG00000284193 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 604-150 chr7 18816570 18816851 + 3 NA intron (NM_058176, intron 16 of 22) intron (NM_058176, intron 16 of 22) 300926 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 410-65 chr12 22783887 22784069 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 158807 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 443-163 chr2 206477633 206477895 + 3 NA intron (NM_003812, intron 2 of 25) intron (NM_003812, intron 2 of 25) 34232 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 590-33 chr12 58274591 58274902 + 3 NA Intergenic Intergenic 186854 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 453-263 chr7 88962765 88962947 + 3 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -167119 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 373-348 chr5 174029932 174030158 + 3 NA Intergenic L1MEg|LINE|L1 -15661 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 923-4 chr14 37765929 37766392 + 3 NA intron (NM_001310135, intron 16 of 32) L1M4|LINE|L1 -6223 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 386-258 chr4 56582436 56582602 + 3 NA intron (NM_001256475, intron 5 of 8) L1MB7|LINE|L1 51913 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 271-170 chr18 1842899 1843043 + 3 NA Intergenic Intergenic -483342 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 466-149 chr2 183517596 183517866 + 3 NA Intergenic Intergenic 393288 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 748-5 chr1 164978699 164979104 + 3 NA Intergenic Intergenic -204260 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 534-155 chr22 33819804 33820153 + 3 NA intron (NM_001362953, intron 1 of 14) MLT1J1|LTR|ERVL-MaLR 94992 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 400-140 chr18 41458251 41458468 + 3 NA Intergenic Intergenic 62318 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 473-19 chr1 199611905 199612286 + 3 NA Intergenic Intergenic -415615 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 689-50 chr2 135348286 135348746 + 3 NA intron (NM_001286569, intron 5 of 21) L1ME3D|LINE|L1 182069 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 348-258 chr20 9627954 9628143 + 3 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -113050 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 508-120 chr2 185688579 185688834 + 3 NA Intergenic Intergenic 50013 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 912-16 chr16 46468867 46469342 + 3 NA TTS (NR_026556) TTS (NR_026556) 99993 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 797-41 chr5 123070213 123070658 + 3 NA Intergenic Intergenic -18806 NM_001136239 93166 Hs.135118 NM_001136239 ENSG00000061455 PRDM6 KMT8C|PDA3|PRISM PR/SET domain 6 protein-coding 692-46 chr2 59928632 59929009 + 3 NA Intergenic Intergenic 454216 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 310-286 chr20 4605179 4605319 + 3 NA Intergenic L1MA7|LINE|L1 -81207 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 522-173 chr3 63594498 63594804 + 3 NA intron (NM_001130003, intron 4 of 5) MIR|SINE|MIR -44600 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 438-257 chr7 48187035 48187286 + 3 NA intron (NM_152701, intron 1 of 61) HAL1b|LINE|L1 15702 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 898-5 chr10 67052856 67053386 + 3 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 40855 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 394-87 chr12 62898654 62898900 + 3 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 36373 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 549-21 chr10 30853008 30853403 + 3 NA intron (NM_001143766, intron 6 of 7) intron (NM_001143766, intron 6 of 7) 129986 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 309-461 chr5 142347166 142347320 + 3 NA intron (NR_120664, intron 2 of 3) L1MA5|LINE|L1 21950 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 1143-4 chr12 29116777 29117364 + 3 NA Intergenic Intergenic -32208 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 726-49 chr22 32550404 32550952 + 3 NA intron (NM_003490, intron 7 of 13) L1MC5a|LINE|L1 75441 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 479-20 chr10 25485571 25485885 + 3 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -165984 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 603-30 chr12 37828982 37829268 + 3 NA Intergenic ALR/Alpha|Satellite|centr -487649 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 459-313 chr8 136819478 136819730 + 3 NA intron (NR_147196, intron 4 of 5) L1P4|LINE|L1 288806 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 226-330 chr7 111944599 111944764 + 3 NA intron (NM_001363540, intron 10 of 52) intron (NM_001363540, intron 10 of 52) 136176 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 786-64 chr8 49016422 49016937 + 3 NA Intergenic L1PA8A|LINE|L1 -37657 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 354-91 chr11 113494484 113494647 + 3 NA Intergenic L1MC4a|LINE|L1 -19167 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 612-108 chr4 181705317 181705619 + 3 NA Intergenic Intergenic 124505 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 452-288 chr9 29276898 29277153 + 3 NA Intergenic Intergenic -63424 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 315-314 chr3 99954386 99954521 + 3 NA intron (NM_001042459, intron 1 of 4) MIRb|SINE|MIR 9945 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 776-42 chr4 176860250 176860649 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -15253 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 1040-15 chr20 4736844 4737509 + 3 NA intron (NR_024269, intron 1 of 1) intron (NR_024269, intron 1 of 1) 3492 NR_024267 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 416-57 chr10 111899752 111899954 + 3 NA Intergenic Intergenic 283912 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 721-23 chr17 39837997 39838337 + 3 NA intron (NM_012481, intron 1 of 7) L1ME2z|LINE|L1 26021 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 464-2 chr1 38753387 38753656 + 3 NA Intergenic L1ME4a|LINE|L1 106251 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 377-153 chr16 86479017 86479296 + 3 NA intron (NR_033925, intron 1 of 3) L1M5|LINE|L1 29704 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 411-272 chr7 47779581 47779747 + 3 NA intron (NM_138295, intron 56 of 56) intron (NM_138295, intron 56 of 56) -15627 NR_161268 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 505-14 chr1 157644985 157645315 + 3 NA Intergenic Intergenic -47065 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 1302-2 chr10 111226383 111227119 + 3 NA Intergenic Intergenic 112460 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 181-118 chr5 23047907 23048031 + 3 NA Intergenic Intergenic -194625 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 470-82 chr15 62937469 62937672 + 3 NA Intergenic Intergenic -105177 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 745-72 chr7 116440781 116441087 + 3 NA Intergenic MER3|DNA|hAT-Charlie -58804 NM_001206747 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 525-265 chr8 109459482 109459690 + 3 NA intron (NM_177531, intron 46 of 77) intron (NM_177531, intron 46 of 77) -80114 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 330-91 chr11 47482356 47482511 + 3 NA intron (NM_001172639, intron 9 of 15) intron (NM_001172639, intron 9 of 15) 6591 NM_001172640 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 344-354 chr4 47443957 47444141 + 3 NA Intergenic L1MEc|LINE|L1 19653 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 440-196 chr5 59639025 59639266 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -51520 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 402-7 chr1 63125010 63125331 + 3 NA Intergenic Intergenic -112699 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 495-67 chr15 46981195 46981377 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -202803 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 405-130 chr2 27311541 27311679 + 3 NA intron (NM_002437, intron 7 of 7) intron (NM_002437, intron 7 of 7) -3165 NM_003353 7349 Hs.534363 NM_003353 ENSG00000163794 UCN UI|UROC urocortin protein-coding 426-116 chr18 71462448 71462604 + 3 NA Intergenic (TTCT)n|Simple_repeat|Simple_repeat 116430 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 458-62 chr13 90714964 90715206 + 3 NA Intergenic MLT2D|LTR|ERVL 211512 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 738-54 chr6 39500758 39501211 + 3 NA intron (NM_001289021, intron 12 of 21) L1PA11|LINE|L1 -69594 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 220-3 chr1 55628221 55628312 + 3 NA Intergenic Kanga11a|DNA|TcMar-Tc2 316697 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 781-48 chr4 118887589 118887941 + 3 NA intron (NM_001286754, intron 1 of 4) MER6|DNA|TcMar-Tigger -1076 NM_001286755 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 380-176 chr2 58277728 58277899 + 3 NA intron (NR_147010, intron 1 of 2) intron (NR_147010, intron 1 of 2) 1936 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 890-35 chr8 26260739 26261225 + 3 NA Intergenic AluSx3|SINE|Alu -30526 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 517-239 chr6 148611723 148611922 + 3 NA Intergenic UCON132b|DNA|hAT-Tip100 102671 NM_001346509 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 500-32 chr10 75860039 75860261 + 3 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 77389 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 306-492 chr8 31476174 31476305 + 3 NA Intergenic Intergenic -163513 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 566-44 chr13 81696627 81696871 + 3 NA Intergenic L1MA3|LINE|L1 -469766 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 423-261 chr7 6912210 6912426 + 3 NA Intergenic MER21-int|LTR|ERVL -86023 NM_198097 221960 Hs.567779 NM_198097 ENSG00000146574 CCZ1B C7orf28A|C7orf28B|CCZ1|H_NH0577018.2 CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated protein-coding 335-147 chr13 106882738 106882906 + 3 NA Intergenic Intergenic 228942 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 642-115 chr9 124070213 124070595 + 3 NA Intergenic L1MB2|LINE|L1 58636 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 303-132 chr14 82297234 82297388 + 3 NA Intergenic Intergenic -345321 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 496-10 chr1 61940762 61940981 + 3 NA intron (NM_001350145, intron 27 of 43) intron (NM_001350145, intron 27 of 43) 94796 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 479-3 chr1 51026161 51026347 + 3 NA Intergenic L1M4a1|LINE|L1 -33583 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 352-93 chr12 13305456 13305594 + 3 NA Intergenic Intergenic 71220 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 428-85 chr16 72454023 72454297 + 3 NA intron (NR_159371, intron 3 of 5) L1MA2|LINE|L1 210810 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 437-136 chr2 80929882 80930121 + 3 NA Intergenic L1MB5|LINE|L1 536945 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 562-55 chr13 109247377 109247678 + 3 NA Intergenic L1ME1|LINE|L1 -80224 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 375-168 chr17 62302666 62302931 + 3 NA Intergenic AluJb|SINE|Alu -27143 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 389-197 chr2 221519462 221519608 + 3 NA intron (NM_001363748, intron 3 of 17) intron (NM_001363748, intron 3 of 17) 52769 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 482-291 chr9 17562154 17562392 + 3 NA Intergenic L1MEg|LINE|L1 -16793 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 536-157 chr3 1810370 1810563 + 3 NA Intergenic L1ME3G|LINE|L1 -288337 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 385-90 chr14 21186420 21186681 + 3 NA Intergenic L1M5|LINE|L1 18953 NR_038970 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 366-231 chr2 154835322 154835496 + 3 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 136714 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 412-90 chr14 53272042 53272333 + 3 NA Intergenic L2a|LINE|L2 118833 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 495-263 chr8 128958852 128959144 + 3 NA intron (NR_145483, intron 2 of 3) intron (NR_145483, intron 2 of 3) 7003 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 782-32 chr2 186158436 186158907 + 3 NA Intergenic L1PA14|LINE|L1 -72354 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 607-82 chr2 132491057 132491423 + 3 NA intron (NM_001508, intron 1 of 1) UCON37|Unknown|Unknown 57529 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 644-87 chr6 135087052 135087356 + 3 NA Intergenic MIR|SINE|MIR -32382 NM_001145158 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 530-27 chr10 51332028 51332370 + 3 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 32626 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 321-575 chr8 121081279 121081458 + 3 NA Intergenic Intergenic -269322 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 712-75 chr5 81942987 81943461 + 3 NA Intergenic L1MCc|LINE|L1 -28799 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 265-84 chr12 125788598 125788736 + 3 NA Intergenic Intergenic 166215 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 649-35 chr17 61732381 61732797 + 3 NA intron (NM_032043, intron 16 of 19) L2c|LINE|L2 130970 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 495-210 chr5 180731925 180732108 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 8042 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 864-47 chr8 43820308 43820895 + 3 NA Intergenic ALR/Alpha|Satellite|centr 528159 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 733-36 chr2 65681722 65682103 + 3 NA Intergenic Intergenic -249313 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 414-184 chr20 23502787 23503036 + 3 NA Intergenic Intergenic 11794 NM_005492 10047 Hs.121602 NM_005492 ENSG00000125815 CST8 CRES|CTES5 cystatin 8 protein-coding 544-89 chr17 11068693 11068958 + 3 NA Intergenic Intergenic -172388 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 336-27 chr1 93251166 93251351 + 3 NA intron (NM_001306076, intron 23 of 28) L1M1|LINE|L1 70542 NM_206886 343099 Hs.482873 NM_206886 ENSG00000122483 CCDC18 NY-SAR-41 coiled-coil domain containing 18 protein-coding 580-110 chr3 26573880 26574103 + 3 NA Intergenic L1PA3|LINE|L1 -48815 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 521-160 chr3 40756556 40756776 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 231706 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 737-89 chr9 113000278 113000789 + 3 NA intron (NM_001101338, intron 3 of 4) intron (NM_001101338, intron 3 of 4) 11659 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 841-12 chr14 69867619 69868217 + 3 NA Intergenic LTR8B|LTR|ERV1 -11498 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 431-80 chr14 57939579 57939882 + 3 NA Intergenic LTR81|LTR|Gypsy -73638 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 799-33 chr20 61021630 61022174 + 3 NA Intergenic Intergenic -57162 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 242-158 chr19 40058751 40058845 + 3 NA Intergenic L1MEc|LINE|L1 -2567 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 457-185 chr4 125880761 125880970 + 3 NA Intergenic L1M4c|LINE|L1 373606 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 434-181 chr3 45392478 45392715 + 3 NA intron (NM_015340, intron 2 of 21) intron (NM_015340, intron 2 of 21) 4020 NM_001368263 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 842-54 chr8 89508169 89508743 + 3 NA Intergenic L1ME3B|LINE|L1 249255 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 724-75 chr5 150921419 150921769 + 3 NA Intergenic L1MDa|LINE|L1 -16611 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 273-148 chr15 78051281 78051409 + 3 NA intron (NM_144572, intron 2 of 12) MIRc|SINE|MIR 26307 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 474-154 chr2 188780809 188781044 + 3 NA intron (NR_161166, intron 1 of 1) L3|LINE|CR1 9197 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 468-102 chr16 54630697 54630929 + 3 NA Intergenic L1ME3Cz|LINE|L1 217420 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 494-298 chr8 127324414 127324583 + 3 NA intron (NR_117099, intron 2 of 3) L1MEf|LINE|L1 -75901 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 566-213 chrX 152046282 152046515 + 3 NA Intergenic MER65-int|LTR|ERV1 71541 NM_021049 4104 Hs.18048 NM_021049 MAGEA5 CT1.5|MAGE5|MAGEA4 MAGE family member A5 protein-coding 483-104 chr2 17109655 17109967 + 3 NA Intergenic L1MA8|LINE|L1 408629 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 564-58 chr14 83528750 83528955 + 3 NA Intergenic Intergenic 886220 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 597-117 chr6 62468142 62468428 + 3 NA Intergenic Intergenic -182058 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 504-120 chr2 44913299 44913496 + 3 NA Intergenic Intergenic 25491 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 607-47 chr15 69867683 69868080 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 32647 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 523-101 chr16 77359166 77359477 + 3 NA exon (NM_001326358, exon 8 of 23) exon (NM_001326358, exon 8 of 23) 75713 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 371-109 chr14 66579757 66580012 + 3 NA intron (NM_001024218, intron 1 of 21) L1M1|LINE|L1 72477 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 1023-4 chr10 13621843 13622376 + 3 NA intron (NM_003675, intron 9 of 9) Charlie14a|DNA|hAT-Charlie 35144 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 423-182 chr3 133217111 133217308 + 3 NA intron (NM_001282865, intron 1 of 3) L1MA8|LINE|L1 39912 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 657-81 chr5 153008801 153009115 + 3 NA Intergenic Intergenic -36609 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 420-66 chr12 46113115 46113459 + 3 NA Intergenic Intergenic -122713 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 652-60 chr19 29358217 29358547 + 3 NA intron (NR_040029, intron 9 of 9) L1MA8|LINE|L1 -145231 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 279-284 chr4 30645676 30645862 + 3 NA Intergenic Intergenic -74600 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 554-27 chr10 36099030 36099254 + 3 NA Intergenic L1MCa|LINE|L1 320840 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 409-230 chr4 144494880 144495080 + 3 NA Intergenic MIR|SINE|MIR 151039 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 473-144 chr2 173280882 173281175 + 3 NA intron (NR_033882, intron 1 of 7) AluSz6|SINE|Alu 1008 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 453-26 chr10 67463911 67464156 + 3 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -60623 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 431-179 chr3 79636665 79636941 + 3 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 128916 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 935-13 chr15 72983950 72984405 + 3 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -68286 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 636-134 chr7 49209921 49210262 + 3 NA Intergenic MIR|SINE|MIR 285544 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 540-69 chr14 72574569 72574898 + 3 NA Intergenic L2c|LINE|L2 57913 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 485-49 chr11 110671701 110671921 + 3 NA intron (NM_020809, intron 3 of 15) L1ME1|LINE|L1 40014 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 564-29 chr11 27119910 27120241 + 3 NA intron (NM_003986, intron 7 of 8) intron (NM_003986, intron 7 of 8) 79260 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 418-122 chr2 117162645 117162881 + 3 NA Intergenic Intergenic -651928 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 291-357 chr5 74005019 74005177 + 3 NA Intergenic L1MEc|LINE|L1 191552 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 314-410 chr4 32046440 32046555 + 3 NA intron (NR_125936, intron 1 of 2) L1M1|LINE|L1 -24075 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 763-3 chr1 190653363 190653960 + 3 NA intron (NR_033922, intron 1 of 4) L1MA7|LINE|L1 28771 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 478-228 chr5 2627395 2627709 + 3 NA Intergenic Intergenic -85039 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 462-234 chr5 123816770 123817066 + 3 NA Intergenic Intergenic 271501 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 578-35 chr11 20960499 20960767 + 3 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 291047 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 515-256 chr7 95389113 95389402 + 3 NA intron (NM_000940, intron 3 of 8) intron (NM_000940, intron 3 of 8) 7118 NM_000940 5446 Hs.440967 NM_000940 ENSG00000105852 PON3 - paraoxonase 3 protein-coding 726-79 chr8 104965547 104966050 + 3 NA Intergenic MIRb|SINE|MIR -352640 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 447-241 chr7 616768 616961 + 3 NA intron (NM_001164760, intron 4 of 10) intron (NM_001164760, intron 4 of 10) 13466 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 417-259 chr7 31005968 31006195 + 3 NA Intergenic Intergenic 42128 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 354-280 chr3 1722250 1722478 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -376439 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 311-366 chr4 17228688 17228884 + 3 NA Intergenic L1MEf|LINE|L1 -42729 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 152-98 chr9 38049675 38049753 + 3 NA intron (NM_003028, intron 1 of 5) MIRc|SINE|MIR 19513 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 282-5 chr1 60794345 60794494 + 3 NA intron (NR_110628, intron 1 of 5) intron (NR_110628, intron 1 of 5) 31165 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 332-276 chr2 193666751 193666928 + 3 NA Intergenic Intergenic -677430 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 422-81 chr14 62869932 62870115 + 3 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 175435 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 466-81 chr14 81671481 81671778 + 3 NA Intergenic L1MEc|LINE|L1 -48568 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 591-145 chr5 178916756 178917036 + 3 NA intron (NM_030613, intron 4 of 4) intron (NM_030613, intron 4 of 4) 20983 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 513-140 chr2 122550578 122550783 + 3 NA Intergenic L2a|LINE|L2 522801 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 451-187 chr5 150922641 150922935 + 3 NA Intergenic L1MDa|LINE|L1 -17805 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 466-253 chr7 62889130 62889333 + 3 NA Intergenic ALR/Alpha|Satellite|centr 414825 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 231-303 chr6 21175230 21175329 + 3 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 336613 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 647-17 chr11 109951390 109951772 + 3 NA Intergenic MER21B|LTR|ERVL -141811 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 578-44 chr11 125187393 125187678 + 3 NA intron (NM_022062, intron 1 of 12) L1MB4|LINE|L1 22784 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 267-292 chr4 66618083 66618180 + 3 NA Intergenic L1PA16|LINE|L1 341307 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 484-226 chr5 137911671 137911952 + 3 NA intron (NM_001300921, intron 8 of 14) L1MA9|LINE|L1 22354 NM_014386 27039 Hs.716884 NM_014386 ENSG00000078795 PKD2L2 TRPP5 polycystin 2 like 2, transient receptor potential cation channel protein-coding 478-152 chr2 181208942 181209153 + 3 NA intron (NR_130784, intron 1 of 4) L1PA15|LINE|L1 85210 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 479-96 chr2 6682378 6682689 + 3 NA Intergenic L1PBa|LINE|L1 -32014 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 581-148 chr6 2385602 2385940 + 3 NA intron (NR_046229, intron 4 of 6) intron (NR_046229, intron 4 of 6) 140018 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 432-200 chr4 63765329 63765606 + 3 NA Intergenic Intergenic 643983 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 279-149 chr18 70931065 70931206 + 3 NA Intergenic Intergenic -280181 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 831-11 chr14 49555300 49555755 + 3 NA Intergenic MER31A|LTR|ERV1 30853 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 295-418 chr6 132681813 132681984 + 3 NA 3' UTR (NM_004666, exon 7 of 7) 3' UTR (NM_004666, exon 7 of 7) 32157 NM_004666 8876 Hs.12114 NM_004666 ENSG00000112299 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 367-178 chr18 62068209 62068409 + 3 NA intron (NM_176787, intron 30 of 30) intron (NM_176787, intron 30 of 30) 118747 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 539-106 chr2 44432625 44432869 + 3 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 70800 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 820-3 chr10 20468861 20469361 + 3 NA Intergenic L1MEc|LINE|L1 -82859 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 243-419 chr7 54007707 54007854 + 3 NA Intergenic Intergenic -195849 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 931-25 chr6 146170816 146171223 + 3 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 141821 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 694-69 chr2 171630810 171631210 + 3 NA Intergenic MER4CL34|LTR|ERV1 -56459 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 948-14 chr15 97443121 97443594 + 3 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 78454 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 989-4 chr13 54320203 54320831 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -8469 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 486-137 chr2 53837631 53837884 + 3 NA intron (NM_001164165, intron 1 of 9) AluY|SINE|Alu 11448 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 624-43 chr15 96191798 96192062 + 3 NA intron (NR_125738, intron 2 of 4) L1MB7|LINE|L1 -64089 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 400-92 chr14 59857176 59857408 + 3 NA intron (NM_021136, intron 1 of 8) L2|LINE|L2 13484 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 570-117 chr2 185521808 185522085 + 3 NA Intergenic Intergenic 216773 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 496-143 chr2 155038018 155038267 + 3 NA Intergenic L1MA4|LINE|L1 339447 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 271-292 chr4 12507314 12507527 + 3 NA Intergenic Intergenic 283969 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 540-51 chr12 40470104 40470372 + 3 NA intron (NM_173600, intron 51 of 173) L1MC5a|LINE|L1 76844 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 377-67 chr11 54859486 54859670 + 3 NA Intergenic ALR/Alpha|Satellite|centr 152746 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 571-27 chr11 44025017 44025371 + 3 NA Intergenic L1MB7|LINE|L1 -22787 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 555-49 chr13 55543395 55543733 + 3 NA Intergenic L1MC5a|LINE|L1 369110 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 798-65 chr8 82320683 82321080 + 3 NA Intergenic Intergenic -478595 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 820-65 chr8 119317549 119317932 + 3 NA Intergenic Intergenic -7431 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 237-393 chr8 126888475 126888642 + 3 NA Intergenic (TTAT)n|Simple_repeat|Simple_repeat -124596 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 729-45 chr21 23087440 23087918 + 3 NA Intergenic L1MB7|LINE|L1 8395 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 420-37 chr10 66407913 66408116 + 3 NA intron (NM_001127384, intron 11 of 17) MER2B|DNA|TcMar-Tigger -518022 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 663-69 chr3 71491895 71492286 + 3 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) 49999 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 395-335 chr8 81756592 81756805 + 3 NA intron (NM_152284, intron 3 of 4) intron (NM_152284, intron 3 of 4) 24250 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 614-116 chr7 6703813 6704171 + 3 NA intron (NM_006956, intron 2 of 5) intron (NM_006956, intron 2 of 5) 2955 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 878-29 chr20 42166895 42167336 + 3 NA intron (NM_133170, intron 17 of 31) MIRb|SINE|MIR -518368 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 449-159 chr22 34208112 34208356 + 3 NA Intergenic L2c|LINE|L2 -285346 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 304-38 chr10 16221361 16221587 + 3 NA Intergenic L1ME3C|LINE|L1 -215469 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 716-89 chr8 142053003 142053417 + 3 NA Intergenic L1MD1|LINE|L1 -123129 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 621-129 chr8 113249506 113249910 + 3 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 127444 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 572-37 chr12 18061197 18061436 + 3 NA Intergenic AluSx1|SINE|Alu 28877 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 514-179 chr3 2966707 2967014 + 3 NA intron (NM_175607, intron 13 of 24) intron (NM_175607, intron 13 of 24) 74645 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 422-143 chr2 29374054 29374257 + 3 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) 101222 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 418-56 chr12 65321531 65321760 + 3 NA intron (NM_001031679, intron 2 of 6) intron (NM_001031679, intron 2 of 6) 42658 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 463-226 chr5 19331808 19332065 + 3 NA Intergenic Intergenic 554336 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 937-15 chr19 44320199 44320741 + 3 NA Intergenic L1MA4|LINE|L1 -15445 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 416-30 chr10 18992413 18992555 + 3 NA Intergenic L1MA1|LINE|L1 -56317 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 433-298 chr9 35172303 35172455 + 3 NA intron (NM_006377, intron 1 of 38) L1MA4|LINE|L1 10370 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 721-83 chr8 91269163 91269582 + 3 NA intron (NM_134266, intron 2 of 18) L1MA6|LINE|L1 20053 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 515-16 chr1 237273815 237274185 + 3 NA intron (NM_001035, intron 2 of 104) (AT)n|Simple_repeat|Simple_repeat -197119 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 446-87 chr12 128633398 128633615 + 3 NA intron (NM_001136103, intron 4 of 8) Charlie1|DNA|hAT-Charlie 190452 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 586-40 chr12 28739260 28739588 + 3 NA Intergenic Intergenic -409854 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 609-6 chr1 248249666 248250022 + 3 NA Intergenic Intergenic 10915 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 400-244 chr4 43791782 43791964 + 3 NA Intergenic Intergenic -224988 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 545-24 chr10 58046764 58047067 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR 220979 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 429-75 chr12 128525841 128526100 + 3 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 231878 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 467-220 chr5 41191719 41191954 + 3 NA intron (NM_000065, intron 5 of 17) L1MA5|LINE|L1 21696 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 387-129 chr16 50823902 50824160 + 3 NA Intergenic L1PA17|LINE|L1 17359 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 636-14 chr10 21451797 21452044 + 3 NA Intergenic AluSx1|SINE|Alu 44721 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 901-33 chr7 18262715 18263233 + 3 NA intron (NM_001321872, intron 2 of 11) L1M4|LINE|L1 -27118 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 397-180 chr2 231111603 231111757 + 3 NA intron (NM_000867, intron 3 of 3) intron (NM_000867, intron 3 of 3) 13362 NM_001320758 3357 Hs.421649 NM_000867 ENSG00000135914 HTR2B 5-HT(2B)|5-HT-2B|5-HT2B 5-hydroxytryptamine receptor 2B protein-coding 696-87 chr5 129256754 129257165 + 3 NA Intergenic Intergenic 140188 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 555-205 chr8 112213319 112213555 + 3 NA Intergenic Intergenic -430056 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 853-42 chr8 59852345 59852832 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger 428812 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 254-336 chr5 171564765 171564958 + 3 NA Intergenic L1ME1|LINE|L1 145214 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 643-86 chr4 66038663 66038926 + 3 NA Intergenic Intergenic -238030 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 432-271 chr7 62792866 62793139 + 3 NA Intergenic ALR/Alpha|Satellite|centr 511054 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 603-159 chr7 96901690 96902104 + 3 NA Intergenic Intergenic -103656 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 477-208 chr3 120610976 120611251 + 3 NA Intergenic Intergenic 14777 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 680-122 chr9 84639398 84639845 + 3 NA Intergenic Intergenic -28837 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 421-6 chr1 70455825 70456085 + 3 NA Intergenic HAL1|LINE|L1 44687 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 524-219 chr6 38826307 38826487 + 3 NA intron (NM_001371, intron 28 of 91) intron (NM_001371, intron 28 of 91) 111086 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 378-19 chr1 115314794 115315000 + 3 NA intron (NM_002506, intron 1 of 2) L2a|LINE|L2 23339 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 563-120 chr3 25250851 25251203 + 3 NA intron (NM_001290216, intron 4 of 10) L1MA4A|LINE|L1 -89775 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 323-381 chr4 136736639 136736780 + 3 NA Intergenic Intergenic -457047 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 892-21 chr2 113001735 113002197 + 3 NA Intergenic Intergenic -3493 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 700-11 chr10 59468033 59468616 + 3 NA Intergenic L1MC3|LINE|L1 -105143 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 356-504 chr9 75391286 75391499 + 3 NA Intergenic MIR|SINE|MIR 302878 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 842-51 chr8 51120587 51120959 + 3 NA Intergenic Intergenic 688672 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 349-77 chr10 94878541 94878702 + 3 NA Intergenic L1PBa|LINE|L1 -60037 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 457-43 chr11 127333644 127333924 + 3 NA intron (NR_120580, intron 1 of 2) intron (NR_120580, intron 1 of 2) 62714 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 347-182 chr18 7780093 7780294 + 3 NA intron (NM_002845, intron 2 of 30) MIRc|SINE|MIR 212877 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 419-13 chr1 90593204 90593360 + 3 NA Intergenic L1PA17|LINE|L1 -64468 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 292-252 chr20 42248876 42249007 + 3 NA intron (NM_007050, intron 13 of 30) MIRb|SINE|MIR -436542 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 401-143 chr19 27607174 27607367 + 3 NA Intergenic ALR/Alpha|Satellite|centr -186161 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 546-225 chr7 64970739 64970990 + 3 NA TTS (NM_015852) TTS (NM_015852) 20172 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 499-229 chr6 137004779 137005107 + 3 NA intron (NM_001278724, intron 4 of 5) intron (NM_001278724, intron 4 of 5) -11712 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 495-236 chr7 49121519 49121764 + 3 NA Intergenic Intergenic 197094 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 1718 chr11 112861182 112861925 + 3 NA Intergenic L1MEi|LINE|L1 -99867 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 302-419 chr7 92529628 92529773 + 3 NA intron (NM_001363367, intron 2 of 4) intron (NM_001363367, intron 2 of 4) 905 NM_032120 84060 Hs.21590 NM_032120 ENSG00000127993 RBM48 C7orf64|HSPC304 RNA binding motif protein 48 protein-coding 302-401 chr7 14207903 14208113 + 3 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -216583 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 433-102 chr16 67764575 67764847 + 3 NA intron (NM_001320240, intron 3 of 16) AluJo|SINE|Alu 41849 NM_001320239 57610 Hs.368569 NM_020850 ENSG00000141084 RANBP10 - RAN binding protein 10 protein-coding 434-203 chr4 33119551 33119716 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie 768595 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 672-43 chr18 8930987 8931311 + 3 NA Intergenic LTR49|LTR|ERV1 -171550 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 536-73 chr14 56781722 56781988 + 3 NA Intergenic Intergenic 23812 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 393-343 chr8 10092016 10092205 + 3 NA intron (NM_001135670, intron 1 of 4) L1MB7|LINE|L1 -3541 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 561-16 chr10 13151352 13151702 + 3 NA Intergenic L1MC2|LINE|L1 -10031 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 1000-24 chr7 52878037 52878491 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -157369 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 392-194 chr22 48852347 48852602 + 3 NA Intergenic MER134|DNA?|DNA? -14296 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 654 chr1 14044563 14044948 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR 295340 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 1032-21 chr6 77016570 77017049 + 3 NA Intergenic Intergenic -423186 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 557-114 chr2 185003945 185004148 + 3 NA Intergenic Intergenic 163026 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 306-211 chr18 77871003 77871176 + 3 NA Intergenic Intergenic 122638 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 511-41 chr12 15577828 15578021 + 3 NA intron (NM_030671, intron 7 of 13) intron (NM_030671, intron 7 of 13) 31313 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 887-19 chr20 61241558 61242235 + 3 NA Intergenic Intergenic -10365 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 309-448 chr5 102750301 102750473 + 3 NA Intergenic Intergenic -4396 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 447-142 chr2 181250868 181251090 + 3 NA intron (NR_130784, intron 2 of 4) intron (NR_130784, intron 2 of 4) 54673 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 900-14 chr17_KI270729v1_random 28118 28517 + 3 NA NA (GAATG)n|Satellite|Satellite NA NA 660-8 chr10 32555560 32555805 + 3 NA intron (NR_109826, intron 13 of 16) intron (NR_109826, intron 13 of 16) 109542 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 259-113 chr14 53058700 53058791 + 3 NA intron (NM_030637, intron 8 of 11) intron (NM_030637, intron 8 of 11) 94578 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 546-164 chr4 30760070 30760312 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 39822 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 267-98 chr13 91307091 91307277 + 3 NA Intergenic Intergenic -40636 NR_027349 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 581-103 chr3 114635985 114636198 + 3 NA intron (NM_001348803, intron 6 of 13) L1M4c|LINE|L1 -11146 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 543-265 chr9 93749298 93749657 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -69880 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 717-42 chr2 79774493 79774843 + 3 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 91915 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 770-63 chr6 13958999 13959396 + 3 NA intron (NM_001165033, intron 1 of 1) MSTB1|LTR|ERVL-MaLR 34004 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 568-138 chr3 152591945 152592283 + 3 NA Intergenic L2b|LINE|L2 -243017 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 478-145 chr2 122620095 122620282 + 3 NA Intergenic L1MEd|LINE|L1 453293 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 273-450 chr8 82127873 82128027 + 3 NA Intergenic Intergenic -285664 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 470-163 chr21 27250858 27251102 + 3 NA Intergenic Intergenic -283892 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 677-80 chr7 132743442 132743966 + 3 NA Intergenic L1MEd|LINE|L1 -15266 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 536-86 chr16 13332567 13332834 + 3 NA Intergenic Intergenic 431102 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 896-15 chr2 13004149 13004610 + 3 NA intron (NR_038434, intron 1 of 5) intron (NR_038434, intron 1 of 5) 2634 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 815-38 chr7 13659230 13659605 + 3 NA Intergenic L1MB3|LINE|L1 327097 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 518-26 chr10 39395709 39395886 + 3 NA Intergenic ALR/Alpha|Satellite|centr 699201 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 616-99 chr21 15178648 15178900 + 3 NA Intergenic Intergenic -113774 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 702-42 chr2 31571059 31571442 + 3 NA intron (NM_000348, intron 1 of 4) L1PA15|LINE|L1 9688 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 727-76 chr7 78248187 78248618 + 3 NA intron (NM_001301128, intron 10 of 20) L1ME1|LINE|L1 -98840 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 456-345 chr9 101403887 101404190 + 3 NA intron (NM_197977, intron 3 of 3) intron (NM_197977, intron 3 of 3) 5184 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 420-75 chr14 39842341 39842532 + 3 NA Intergenic Intergenic -409936 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 567-16 chr1 214687603 214687829 + 3 NA Intergenic Intergenic 84521 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 430-307 chr8 68338793 68338984 + 3 NA intron (NR_146187, intron 1 of 13) L1ME1|LINE|L1 -7397 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 465-212 chr4 179123379 179123638 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR -1215572 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 594-110 chr5 31093139 31093452 + 3 NA Intergenic Intergenic -100391 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 279-208 chr2 214036454 214036624 + 3 NA intron (NR_047660, intron 12 of 14) L1MC4|LINE|L1 278472 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 447-233 chr6 99944758 99945073 + 3 NA intron (NM_001040179, intron 3 of 5) L2a|LINE|L2 -49123 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 587-81 chr2 167075783 167076160 + 3 NA intron (NM_152381, intron 2 of 10) AluSq2|SINE|Alu 64984 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 514-10 chr1 107202151 107202427 + 3 NA intron (NM_001113226, intron 1 of 6) MIR|SINE|MIR 54220 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 357-101 chr14 20075297 20075506 + 3 NA Intergenic L1MA8|LINE|L1 15356 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 541-104 chr19 52151675 52151908 + 3 NA Intergenic MER4-int|LTR|ERV1 -11853 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 340-45 chr10 41903413 41903608 + 3 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 464535 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 520-225 chr5 8311398 8311753 + 3 NA Intergenic L1M1|LINE|L1 145989 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 437-299 chrX 23376144 23376358 + 3 NA intron (NM_173495, intron 1 of 2) intron (NM_173495, intron 1 of 2) 41402 NM_173495 139411 Hs.319503 NM_173495 ENSG00000165186 PTCHD1 AUTSX4 patched domain containing 1 protein-coding 239-400 chr8 63003906 63004062 + 3 NA Intergenic Intergenic 26123 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 503-80 chr12 114928498 114928841 + 3 NA Intergenic L1MA10|LINE|L1 -244494 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 681-53 chr3 180571424 180571765 + 3 NA Intergenic Intergenic -30569 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 490-264 chr7 46548634 46548857 + 3 NA Intergenic Intergenic 148377 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 563-203 chrX 90015935 90016307 + 3 NA Intergenic L1PB1|LINE|L1 94213 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 674-31 chr14 86513606 86514036 + 3 NA Intergenic MIR|SINE|MIR -391957 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 485-91 chr15 67904267 67904573 + 3 NA Intergenic LTR19A|LTR|ERV1 -64375 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 462-51 chr11 99333703 99333960 + 3 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -222314 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 500-267 chr7 42553151 42553424 + 3 NA Intergenic MER1A|DNA|hAT-Charlie 153160 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 849-6 chr11 85408005 85408313 + 3 NA intron (NM_001142699, intron 3 of 27) L1ME4a|LINE|L1 219111 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 638-79 chr3 8058230 8058520 + 3 NA Intergenic Intergenic -42068 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 685-36 chr18 69412906 69413211 + 3 NA intron (NM_152721, intron 1 of 7) MLT1N2|LTR|ERVL-MaLR 12170 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 390-237 chr3 58813255 58813387 + 3 NA intron (NM_001351530, intron 13 of 15) intron (NM_001351530, intron 13 of 15) -11150 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 680-51 chr2 18720269 18720605 + 3 NA Intergenic MIRc|SINE|MIR -130857 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 427-102 chr18 74257324 74257482 + 3 NA intron (NM_001914, intron 3 of 5) intron (NM_001914, intron 3 of 5) 34560 NM_001190807 1528 Hs.465413 NM_001914 ENSG00000166347 CYB5A CYB5|MCB5|METAG cytochrome b5 type A protein-coding 614-75 chr22 34477701 34478054 + 3 NA Intergenic Intergenic 520039 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 463-28 chr1 199495817 199496116 + 3 NA Intergenic L1M2|LINE|L1 347368 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 575-23 chr10 122314804 122315091 + 3 NA intron (NM_001318189, intron 10 of 15) L1ME3A|LINE|L1 43651 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 436-23 chr1 230157058 230157254 + 3 NA intron (NM_004481, intron 1 of 15) MIRb|SINE|MIR 89918 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 458-165 chr3 4151046 4151323 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -152120 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 403-232 chr4 178780752 178780925 + 3 NA Intergenic Intergenic -872902 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 491-66 chr14 42812226 42812475 + 3 NA Intergenic Intergenic 1205494 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 456-205 chr3 103812905 103813178 + 3 NA Intergenic Intergenic -288925 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 349-273 chr2 125464931 125465157 + 3 NA Intergenic L1ME3A|LINE|L1 652941 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 349-515 chr9 7276031 7276239 + 3 NA Intergenic Intergenic 518785 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 556-177 chr5 96901792 96902116 + 3 NA intron (NM_001329229, intron 10 of 17) intron (NM_001329229, intron 10 of 17) 26015 NM_022350 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 742-69 chr6 163047083 163047408 + 3 NA intron (NR_110871, intron 2 of 3) intron (NR_110871, intron 2 of 3) 6916 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 653-122 chr8 94100982 94101266 + 3 NA Intergenic Intergenic 107431 NM_004063 1015 Hs.591853 NM_004063 ENSG00000079112 CDH17 CDH16|HPT-1|HPT1 cadherin 17 protein-coding 436-252 chr5 144730532 144730801 + 3 NA Intergenic L1PB2|LINE|L1 525275 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 376-20 chr1 186077474 186077721 + 3 NA intron (NM_031935, intron 54 of 106) L1MC4|LINE|L1 -218676 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 474-68 chr12 112998414 112998582 + 3 NA intron (NM_002535, intron 5 of 9) MLT1C|LTR|ERVL-MaLR 19979 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 655-108 chr7 1639374 1639762 + 3 NA Intergenic Intergenic 25098 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 545-61 chr13 50783975 50784279 + 3 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -23728 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 536-138 chr2 217485879 217486206 + 3 NA intron (NR_026597, intron 2 of 12) Tigger3d|DNA|TcMar-Tigger 203309 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 487-44 chr10 82427335 82427514 + 3 NA intron (NR_163253, intron 3 of 10) L1M4|LINE|L1 -194504 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 436-294 chr8 33698109 33698289 + 3 NA Intergenic L1PA4|LINE|L1 -98093 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 555-122 chr22 39931262 39931578 + 3 NA intron (NM_001291828, intron 1 of 4) intron (NM_001291828, intron 1 of 4) 4816 NM_001291824 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 523-221 chr5 83300061 83300289 + 3 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -171499 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 1145-13 chr8 136068466 136069023 + 3 NA Intergenic Intergenic -462054 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 468-182 chr21 28383962 28384173 + 3 NA Intergenic Intergenic -155251 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 857-32 chr20 39323189 39323691 + 3 NA Intergenic LTR16C|LTR|ERVL -98692 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 591-135 chr5 101509818 101510133 + 3 NA Intergenic Intergenic -606693 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 361-92 chr12 14284871 14285067 + 3 NA Intergenic Intergenic -80663 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 1233-3 chr13 52064890 52065702 + 3 NA 3' UTR (NM_199289, exon 22 of 22) 3' UTR (NM_199289, exon 22 of 22) 40605 NM_021645 9724 Hs.512963 NM_021645 ENSG00000253797 UTP14C 2700066J21Rik|KIAA0266|UTP14B UTP14C small subunit processome component protein-coding 422-272 chr7 2990161 2990346 + 3 NA intron (NM_001324281, intron 1 of 25) L1ME2|LINE|L1 53614 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 482-89 chr16 62662943 62663141 + 3 NA Intergenic Intergenic -626604 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 647-32 chr15 49772163 49772554 + 3 NA Intergenic L1M5|LINE|L1 151310 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 286-446 chr8 60699097 60699253 + 3 NA intron (NM_017780, intron 1 of 37) intron (NM_017780, intron 1 of 37) 20435 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 184-31 chr10 105391161 105391272 + 3 NA Intergenic Intergenic 429117 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 914-7 chr12 118759271 118759887 + 3 NA intron (NR_134999, intron 1 of 1) MIR|SINE|MIR 2100 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 475-124 chr2 30676221 30676513 + 3 NA Intergenic L1MEd|LINE|L1 131079 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 334-116 chr12 109277420 109277568 + 3 NA TTS (NM_213596) TTS (NM_213596) 31790 NM_213596 121643 Hs.528316 NM_213596 ENSG00000139445 FOXN4 - forkhead box N4 protein-coding 581-41 chr13 106340859 106341253 + 3 NA Intergenic AluSz|SINE|Alu -35508 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 447-74 chr14 56085283 56085441 + 3 NA Intergenic L2a|LINE|L2 -33049 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 607-102 chr3 178987672 178988059 + 3 NA Intergenic LTR8B|LTR|ERV1 83944 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 494-104 chr18 14048743 14048989 + 3 NA Intergenic L1PA16|LINE|L1 83569 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 343-586 chr9 117726086 117726224 + 3 NA Intergenic MIRb|SINE|MIR 21752 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 490-254 chr6 164153749 164154069 + 3 NA Intergenic Intergenic -482425 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 539-96 chr18 647766 648055 + 3 NA intron (NM_199167, intron 8 of 8) intron (NM_199167, intron 8 of 8) -9743 NM_001354867 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 297-419 chr6 145325248 145325374 + 3 NA Intergenic Intergenic 361566 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 803-30 chr20 59139743 59140190 + 3 NA Intergenic Kanga1b|DNA|TcMar-Tc2 -51054 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 663-101 chr7 16989959 16990483 + 3 NA Intergenic Intergenic -108238 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 454-116 chr16 84243413 84243620 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -3766 NM_172347 93107 Hs.335877 NM_133490 ENSG00000168418 KCNG4 KV6.3|KV6.4 potassium voltage-gated channel modifier subfamily G member 4 protein-coding 449-279 chr8 113584874 113585113 + 3 NA Intergenic Intergenic -148054 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 519-263 chrX 81856993 81857198 + 3 NA Intergenic L1M3b|LINE|L1 654993 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 481-240 chr5 23364140 23364340 + 3 NA Intergenic Intergenic -143369 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 1033-11 chr7 51605133 51605632 + 3 NA Intergenic Intergenic -212126 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 674-85 chr6 9848009 9848423 + 3 NA Intergenic MIR|SINE|MIR -556286 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 628-132 chr8 100054473 100054802 + 3 NA intron (NM_015668, intron 9 of 27) intron (NM_015668, intron 9 of 27) 50055 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 651-91 chr4 60461737 60462232 + 3 NA Intergenic L1M3d|LINE|L1 -460635 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 287-155 chr16 36070986 36071197 + 3 NA Intergenic ALR/Alpha|Satellite|centr 324539 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 514-233 chr5 123685405 123685720 + 3 NA Intergenic L1PA16|LINE|L1 140145 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 540-143 chr3 83085683 83086082 + 3 NA Intergenic Intergenic 1099740 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 364-20 chr1 98106733 98106890 + 3 NA Intergenic Intergenic -57118 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 482-126 chr2 79797851 79798056 + 3 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 68630 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 459-276 chr7 48746165 48746483 + 3 NA Intergenic Intergenic -178223 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 1269-3 chr12 10467780 10468579 + 3 NA Intergenic L1P4a|LINE|L1 -13494 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 607-143 chr8 88432790 88433171 + 3 NA Intergenic L1M2|LINE|L1 -105497 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 687-26 chr11 58044462 58044890 + 3 NA intron (NM_001005212, intron 1 of 2) intron (NM_001005212, intron 1 of 2) 13723 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 545-57 chr12 58681546 58681824 + 3 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 89983 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 498-8 chr1 99813120 99813414 + 3 NA Intergenic LTR33|LTR|ERVL -37094 NM_000642 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 501-259 chr8 84283883 84284207 + 3 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 99379 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 556-53 chr12 65708567 65708856 + 3 NA Intergenic L1MA5|LINE|L1 -66339 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 273-474 chr9 119193801 119193964 + 3 NA intron (NM_014618, intron 7 of 7) MLT1H1|LTR|ERVL-MaLR 175553 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 276-74 chr11 12940087 12940247 + 3 NA 3' UTR (NM_021961, exon 13 of 13) 3' UTR (NM_021961, exon 13 of 13) 49381 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 693-92 chr7 9411170 9411590 + 3 NA Intergenic Intergenic -222890 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 319-96 chr11 93040755 93040931 + 3 NA Intergenic L1ME3B|LINE|L1 71220 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 636-7 chr1 114972078 114972547 + 3 NA intron (NM_001282541, intron 27 of 31) L1M1|LINE|L1 -57512 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 398-145 chr19 28254587 28254844 + 3 NA Intergenic Intergenic -351973 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 887-5 chr11 3209587 3210268 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -8405 NR_027138 283303 Hs.151154 NM_173590 ENSG00000236301 MRGPRG-AS1 C11orf36|HSD-40 MRGPRG antisense RNA 1 ncRNA 581-46 chr14 70967151 70967599 + 3 NA intron (NM_014982, intron 3 of 35) intron (NM_014982, intron 3 of 35) 59916 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 304-201 chr17 73485636 73485820 + 3 NA intron (NM_001144952, intron 2 of 44) MER58B|DNA|hAT-Charlie -27955 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 901-32 chr7 1768824 1769339 + 3 NA Intergenic MER51E|LTR|ERV1 -26771 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 611-122 chr5 120764489 120764959 + 3 NA Intergenic Intergenic 233260 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 352-195 chr18 40303203 40303426 + 3 NA Intergenic L1PA17|LINE|L1 237028 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 484-246 chr7 17283264 17283497 + 3 NA Intergenic Intergenic -15272 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 490-58 chr11 100966676 100966929 + 3 NA intron (NM_001367945, intron 19 of 25) intron (NM_001367945, intron 19 of 25) 32528 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 747-54 chr5 89494073 89494640 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 522364 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 512-273 chr8 91707073 91707251 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 310518 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 502-185 chr3 111484000 111484283 + 3 NA Intergenic Intergenic -58056 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 414-307 chr7 50141187 50141399 + 3 NA exon (NM_001161834, exon 7 of 9) exon (NM_001161834, exon 7 of 9) 45207 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 523-79 chr14 66569570 66569922 + 3 NA intron (NM_001024218, intron 1 of 21) L1MA8|LINE|L1 62339 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 643-50 chr19 48524793 48525034 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie -11724 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 832-30 chr4 63010871 63011204 + 3 NA Intergenic MER57-int|LTR|ERV1 -849272 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 472-342 chr9 31474114 31474378 + 3 NA Intergenic Intergenic -92756 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 529-187 chr5 146728438 146728626 + 3 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 150253 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 381-272 chr4 63782035 63782199 + 3 NA Intergenic L1MA9|LINE|L1 627333 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 485-109 chr18 4791202 4791517 + 3 NA Intergenic L1PA12|LINE|L1 -289823 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 332-76 chr10 113333988 113334145 + 3 NA Intergenic L1ME3B|LINE|L1 204795 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 447-139 chr2 173582938 173583208 + 3 NA Intergenic Intergenic 228201 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 590-75 chr2 25734097 25734481 + 3 NA 3' UTR (NM_018263, exon 12 of 12) 3' UTR (NM_018263, exon 12 of 12) 60402 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 394-155 chr2 19318235 19318473 + 3 NA Intergenic L1M5|LINE|L1 -30075 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 492-49 chr11 120703360 120703589 + 3 NA intron (NM_001282470, intron 2 of 19) intron (NM_001282470, intron 2 of 19) 115641 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 710-73 chr5 2549040 2549408 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -163367 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 594-142 chr7 95360841 95361245 + 3 NA intron (NM_000940, intron 8 of 8) intron (NM_000940, intron 8 of 8) 35332 NM_000940 5446 Hs.440967 NM_000940 ENSG00000105852 PON3 - paraoxonase 3 protein-coding 967-29 chr9 114886101 114886545 + 3 NA Intergenic LTR79|LTR|ERVL 44272 NM_001244 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 278-15 chr1 165006007 165006158 + 3 NA Intergenic Intergenic -231441 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 618-33 chr13 93035598 93035887 + 3 NA Intergenic Intergenic -9599 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 538-207 chr5 159623314 159623508 + 3 NA Intergenic L1PB1|LINE|L1 -157135 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 465-150 chr2 226037075 226037307 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -105603 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 714-78 chr9 4439040 4439443 + 3 NA Intergenic L1MB8|LINE|L1 -51227 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 424-88 chr16 17635991 17636276 + 3 NA Intergenic Intergenic -165173 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 679-73 chr3 86947697 86947972 + 3 NA intron (NM_001320494, intron 3 of 3) intron (NM_001320494, intron 3 of 3) 43315 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 336-232 chr18 65258225 65258366 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -491957 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 374-282 chr4 91954765 91954942 + 3 NA Intergenic L1ME1|LINE|L1 322449 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 542-130 chr3 59504180 59504373 + 3 NA Intergenic L2a|LINE|L2 154221 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 1006-8 chr13 108152945 108153470 + 3 NA Intergenic LTR8B|LTR|ERV1 61575 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 477-83 chr12 129149648 129149821 + 3 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) 40044 NR_104172 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 477-133 chr19 53259752 53259936 + 3 NA TTS (NM_173856) TTS (NM_173856) 1552 NM_173856 317701 Hs.553684 NM_173856 ENSG00000196131 VN1R2 V1RL2 vomeronasal 1 receptor 2 protein-coding 531-211 chr6 24328763 24328965 + 3 NA intron (NM_016356, intron 2 of 9) L2c|LINE|L2 -28039 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 437-223 chr5 61893966 61894184 + 3 NA Intergenic L1MEc|LINE|L1 -158377 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 1029-4 chr12 37802123 37802822 + 3 NA Intergenic ALR/Alpha|Satellite|centr -514302 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 632-107 chr7 61957725 61957981 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1346203 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1020-16 chr4 92612728 92613352 + 3 NA intron (NM_001286838, intron 2 of 14) L1MB7|LINE|L1 308641 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 514-301 chr9 120139769 120140029 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 105151 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 497-300 chr9 84103590 84103931 + 3 NA Intergenic Intergenic 40317 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 475-214 chr5 8319657 8319882 + 3 NA Intergenic Intergenic 137795 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 917-19 chr5 97708251 97708758 + 3 NA Intergenic L1MA2|LINE|L1 -132254 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 671-79 chr5 72119900 72120218 + 3 NA intron (NM_005909, intron 2 of 6) intron (NM_005909, intron 2 of 6) 12584 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 470-264 chr8 61530662 61530848 + 3 NA intron (NM_004318, intron 21 of 24) HAL1|LINE|L1 159056 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 679-30 chr14 52985228 52985635 + 3 NA Intergenic L2|LINE|L2 -34334 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 289-412 chr6 62548625 62548826 + 3 NA Intergenic Intergenic -262498 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 537-108 chr2 52705891 52706133 + 3 NA Intergenic Intergenic -3397 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 550-108 chr2 21783086 21783299 + 3 NA Intergenic Intergenic -72540 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 405-86 chr14 67173936 67174106 + 3 NA intron (NM_001024218, intron 20 of 21) L1M2a|LINE|L1 -15419 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 531-170 chr4 33968784 33969093 + 3 NA intron (NR_125902, intron 3 of 4) L1MA7|LINE|L1 70955 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 302-303 chr3 187003542 187003726 + 3 NA intron (NM_173216, intron 2 of 7) L1M5|LINE|L1 -18221 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 1037-12 chr4 104314889 104315561 + 3 NA Intergenic L1MB4|LINE|L1 -175740 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 698-55 chr3 36171045 36171323 + 3 NA Intergenic Intergenic -209303 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 607-130 chr6 139452229 139452518 + 3 NA Intergenic Intergenic 22223 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 264-345 chr5 159520622 159520798 + 3 NA Intergenic Intergenic -54434 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 785-10 chr1 241176464 241176822 + 3 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 44371 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 864-6 chr11 90740454 90740901 + 3 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 128525 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 627-93 chr5 94212306 94212542 + 3 NA intron (NM_001145678, intron 20 of 20) LTR40a|LTR|ERVL -100725 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 396-123 chr16 79733454 79733718 + 3 NA intron (NR_104663, intron 5 of 5) MIRc|SINE|MIR -36885 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 669-9 chr1 208122029 208122416 + 3 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 122162 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 906-27 chr7 117896871 117897199 + 3 NA Intergenic MER20|DNA|hAT-Charlie -23594 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 319-329 chr3 45941444 45941606 + 3 NA intron (NM_024513, intron 14 of 17) intron (NM_024513, intron 14 of 17) -1939 NM_006564 10663 Hs.34526 NM_006564 ENSG00000172215 CXCR6 BONZO|CD186|STRL33|TYMSTR C-X-C motif chemokine receptor 6 protein-coding 775-40 chr19 30455572 30455941 + 3 NA intron (NM_014717, intron 2 of 4) L1MA4|LINE|L1 83372 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 307-362 chr4 184143200 184143417 + 3 NA intron (NM_153343, intron 2 of 7) intron (NM_153343, intron 2 of 7) 74565 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 676-5 chr1 89554009 89554396 + 3 NA intron (NM_001134476, intron 3 of 7) intron (NM_001134476, intron 3 of 7) 29364 NM_001369819 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 692-9 chr10 41760283 41760564 + 3 NA Intergenic ALR/Alpha|Satellite|centr 607622 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 453-58 chr12 105878218 105878471 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 171570 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 701-70 chr4 96920728 96921100 + 3 NA Intergenic Intergenic -446012 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 578-42 chr11 103637897 103638193 + 3 NA Intergenic LTR85a|LTR|Gypsy? -211861 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 294-8 chr1 80035576 80035753 + 3 NA Intergenic L1M4|LINE|L1 -500091 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 1028 chr1 235243855 235244649 + 3 NA intron (NR_135074, intron 7 of 24) intron (NR_135074, intron 7 of 24) -54136 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 382-98 chr13 107018538 107018716 + 3 NA Intergenic Intergenic 302336 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 636-83 chr20 24295538 24295933 + 3 NA Intergenic Intergenic 95968 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 232-178 chr2 108629092 108629208 + 3 NA intron (NM_001193484, intron 1 of 9) intron (NM_001193484, intron 1 of 9) 7899 NM_001193484 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 483-52 chr13 29613294 29613476 + 3 NA Intergenic Intergenic -17697 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 270-103 chr13 104455362 104455466 + 3 NA Intergenic L1PA13|LINE|L1 -1010453 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 492-252 chr8 36193065 36193365 + 3 NA Intergenic Intergenic -482895 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 511-195 chr4 90711774 90711954 + 3 NA intron (NM_207491, intron 6 of 7) L1PA11|LINE|L1 476833 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 771-82 chr8 86716672 86717175 + 3 NA intron (NM_019098, intron 3 of 17) L1MA5A|LINE|L1 26752 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 992-7 chr13 37551355 37551939 + 3 NA TTS (NR_040244) TTS (NR_040244) 16707 NR_040244 400121 Hs.558894 NR_040244 ENSG00000275226 LINC00547 - long intergenic non-protein coding RNA 547 ncRNA 286-210 chr2 82125998 82126177 + 3 NA Intergenic LTR1E|LTR|ERV1 -659141 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 764-23 chr14 43399336 43399761 + 3 NA Intergenic L2b|LINE|L2 1107735 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 309-41 chr10 28184128 28184282 + 3 NA intron (NR_134518, intron 2 of 16) intron (NR_134518, intron 2 of 16) 97918 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 618-54 chr19 37720644 37720968 + 3 NA Intergenic Intergenic -1045 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 416-58 chr10 115076249 115076429 + 3 NA Intergenic Intergenic -17026 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 476-213 chr5 33074099 33074297 + 3 NA Intergenic MIRb|SINE|MIR 126755 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 505-34 chr10 87627325 87627533 + 3 NA Intergenic MER57A-int|LTR|ERV1 -32449 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 445-14 chr1 227653626 227653876 + 3 NA intron (NM_001367909, intron 3 of 3) intron (NM_001367909, intron 3 of 3) 43956 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 571-89 chr2 210277572 210277762 + 3 NA Intergenic L2c|LINE|L2 25948 NM_079422 4632 Hs.187338 NM_079420 ENSG00000168530 MYL1 MLC1F|MLC3F|MYOFTA myosin light chain 1 protein-coding 298-458 chr8 66354820 66354971 + 3 NA Intergenic L1ME2|LINE|L1 74082 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 509-224 chr6 138902760 138902994 + 3 NA 3' UTR (NM_001195037, exon 21 of 21) 3' UTR (NM_001195037, exon 21 of 21) 85384 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 479-147 chr3 139749853 139750076 + 3 NA Intergenic L1M4c|LINE|L1 -71914 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 392-93 chr15 60049010 60049185 + 3 NA Intergenic Intergenic 44786 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 474-64 chr12 77869337 77869501 + 3 NA intron (NM_001024383, intron 1 of 39) intron (NM_001024383, intron 1 of 39) 38525 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 534-145 chr21 21771472 21771714 + 3 NA intron (NR_109958, intron 2 of 4) Zaphod3|DNA|hAT-Tip100 24608 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 434-47 chr10 125237657 125237954 + 3 NA Intergenic AluSx1|SINE|Alu -76775 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 628-61 chr19 29129689 29130157 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 83228 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 492-289 chrX 78388239 78388436 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -60646 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 217-149 chr17 53617960 53618043 + 3 NA Intergenic L1MEi|LINE|L1 -204926 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 672-77 chr3_KI270778v1_alt 55247 55674 + 3 NA NA Intergenic NA NA 587-101 chr3 34624873 34625209 + 3 NA Intergenic L1MB4|LINE|L1 768982 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 1172-2 chr16 76595459 76596340 + 3 NA Intergenic Intergenic -39099 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 443-44 chr10 111322672 111322909 + 3 NA Intergenic Intergenic 208499 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 1281-3 chr14 78395962 78396867 + 3 NA intron (NR_073547, intron 4 of 20) L1MD1|LINE|L1 -7305 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 479-61 chr14 57947546 57947733 + 3 NA Intergenic L1PBa|LINE|L1 -81547 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 763-33 chr2 214543106 214543550 + 3 NA intron (NR_159945, intron 4 of 4) intron (NR_159945, intron 4 of 4) 33146 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 365-55 chr10 86375849 86376085 + 3 NA Intergenic L1ME4a|LINE|L1 -9172 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 858-15 chr14 59654854 59655312 + 3 NA intron (NM_021136, intron 3 of 8) L1MB7|LINE|L1 -8063 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 467-178 chr3 59431346 59431510 + 3 NA Intergenic Intergenic 227069 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 592-135 chr5 6407337 6407772 + 3 NA Intergenic Intergenic -29007 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 503-210 chr4 38505651 38505823 + 3 NA intron (NR_110951, intron 1 of 7) HAL1|LINE|L1 -4030 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 426-58 chr12 13069976 13070174 + 3 NA intron (NM_020853, intron 9 of 12) MIR|SINE|MIR 25600 NM_001206845 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 471-62 chr12 23420829 23420994 + 3 NA Intergenic AluSx|SINE|Alu 163675 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 608-130 chr6 36266697 36267055 + 3 NA intron (NM_173676, intron 1 of 7) intron (NM_173676, intron 1 of 7) -3584 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 303-355 chr5 45320995 45321165 + 3 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 375300 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 299-136 chr14 60914795 60914922 + 3 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 66221 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 727-37 chr16 73937300 73937783 + 3 NA Intergenic Intergenic 277980 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 931-2 chr10 112054255 112054974 + 3 NA Intergenic Intergenic 129151 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 489-86 chr14_GL000225v1_random 111386 111639 + 3 NA NA BSR/Beta|Satellite|Satellite NA NA 545-7 chr1 95695145 95695368 + 3 NA Intergenic Intergenic 185140 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 360-443 chr7 113735822 113736031 + 3 NA Intergenic L1MD1|LINE|L1 183083 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 266-46 chr10 76656074 76656190 + 3 NA Intergenic L1PA16|LINE|L1 -231912 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 532-210 chr5 148526257 148526582 + 3 NA intron (NM_001040172, intron 3 of 5) intron (NM_001040172, intron 3 of 5) 110642 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 507-207 chr5 124921634 124921819 + 3 NA Intergenic Intergenic -115105 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 736-83 chr7 111144117 111144449 + 3 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 53156 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 728-102 chr8 126130500 126130951 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -179528 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 499-243 chr7 53477504 53477684 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 334337 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 464-44 chr12 119655965 119656213 + 3 NA Intergenic L1MEf|LINE|L1 -12044 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 398-287 chr6 2277175 2277444 + 3 NA intron (NR_046229, intron 3 of 6) AluY|SINE|Alu 31556 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 589-132 chr5 141271177 141271466 + 3 NA Intergenic MER21-int|LTR|ERVL 25926 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 617-71 chr2 199874889 199875216 + 3 NA Intergenic LTR48B|LTR|ERV1 -23879 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 558-105 chr2 128396416 128396717 + 3 NA Intergenic Intergenic -77698 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 615-2 chr1 51042351 51042579 + 3 NA Intergenic AluSz|SINE|Alu -17372 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 413-112 chr17 52653333 52653510 + 3 NA Intergenic Intergenic -208700 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 370-17 chr1 157697476 157697655 + 3 NA intron (NM_052939, intron 5 of 14) intron (NM_052939, intron 5 of 14) 3204 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 432-183 chr3 103633518 103633752 + 3 NA Intergenic L1M3|LINE|L1 -109519 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 282-494 chr9 122025018 122025132 + 3 NA intron (NM_194252, intron 3 of 3) L1ME1|LINE|L1 68531 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 674-20 chr12 14324275 14324707 + 3 NA Intergenic AluJo|SINE|Alu -41141 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 343-277 chr2 150074639 150074833 + 3 NA Intergenic L1MA8|LINE|L1 182271 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 614-10 chr10 41737696 41738158 + 3 NA Intergenic ALR/Alpha|Satellite|centr 630118 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 613-120 chr6 122092519 122092870 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -306857 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 457-17 chr1 177419443 177419644 + 3 NA Intergenic L2b|LINE|L2 67957 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 395-301 chr7 3395461 3395632 + 3 NA intron (NM_152744, intron 1 of 44) L1MB4|LINE|L1 94294 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 484-6 chr1 56812640 56812879 + 3 NA intron (NM_001004303, intron 1 of 19) intron (NM_001004303, intron 1 of 19) 6645 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 828-14 chr13 53427091 53427597 + 3 NA Intergenic AluSq|SINE|Alu -275444 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 1103-16 chr8 141851494 141852024 + 3 NA Intergenic Intergenic -65446 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 576-42 chr13 93686973 93687242 + 3 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 171366 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 1018-24 chr21 27619895 27620457 + 3 NA Intergenic L1MCa|LINE|L1 -102203 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 442-156 chr20 13354752 13355045 + 3 NA Intergenic HAL1|LINE|L1 -115211 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 857-22 chr16 57596527 57597095 + 3 NA Intergenic L1ME3B|LINE|L1 -22927 NM_001370435 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 546-42 chr11 100415475 100415686 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -271708 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 302-353 chr5 111104841 111105072 + 3 NA intron (NM_139281, intron 9 of 22) intron (NM_139281, intron 9 of 22) 12784 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 510-39 chr11 21531029 21531352 + 3 NA intron (NM_201551, intron 15 of 18) L2c|LINE|L2 -661895 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 416-266 chr5 15774901 15775126 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -160011 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 890-16 chr2 23066142 23066688 + 3 NA Intergenic Intergenic -318764 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 472-193 chr21 27244326 27244563 + 3 NA Intergenic Intergenic -277356 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 425-288 chr7 62748439 62748662 + 3 NA Intergenic ALR/Alpha|Satellite|centr 555506 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 389-68 chr11 106792826 106793044 + 3 NA intron (NM_001256424, intron 5 of 8) L1MA9|LINE|L1 225541 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 586-135 chr6 121003268 121003522 + 3 NA Intergenic L1MA4|LINE|L1 331085 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 249-282 chr3 183936882 183937049 + 3 NA intron (NM_001320032, intron 26 of 29) intron (NM_001320032, intron 26 of 29) 50165 NR_039650 100616127 NR_039650 ENSG00000263932 MIR4448 - microRNA 4448 ncRNA 713-31 chr18 47761480 47762045 + 3 NA Intergenic L1PA16|LINE|L1 168897 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 503-152 chr2 114881852 114882081 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -48418 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 546-200 chr5 160839592 160839870 + 3 NA intron (NM_001366652, intron 1 of 24) L1MC4|LINE|L1 12480 NM_025153 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 802-18 chr14 51918284 51918800 + 3 NA promoter-TSS (NR_126331) promoter-TSS (NR_126331) 29 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 695-53 chr2 133033072 133033380 + 3 NA intron (NM_207481, intron 6 of 17) L1MA1|LINE|L1 117669 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 507-154 chr21 27298985 27299219 + 3 NA Intergenic L1MDa|LINE|L1 -332014 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 450-278 chr7 40734336 40734568 + 3 NA intron (NM_024728, intron 13 of 14) MIRb|SINE|MIR 245487 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 550-168 chr4 128421482 128421810 + 3 NA Intergenic Intergenic -6370 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 697-52 chr21 30532041 30532558 + 3 NA Intergenic L1MA9|LINE|L1 9565 NM_001303120 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 325-386 chr4 41533337 41533554 + 3 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -4712 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 567-209 chrX 40050937 40051126 + 3 NA TTS (NM_001123385) TTS (NM_001123385) 46435 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 353-11 chr1 56010304 56010468 + 3 NA Intergenic L1PREC2|LINE|L1 65299 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 464-198 chr5 36004406 36004614 + 3 NA Intergenic LTR50|LTR|ERVL -3488 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 650-94 chr5 46127515 46127918 + 3 NA Intergenic ALR/Alpha|Satellite|centr -431336 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1212-11 chr5 121790821 121791573 + 3 NA Intergenic Intergenic -60685 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 341-426 chr5 25369938 25370207 + 3 NA Intergenic L1MA2|LINE|L1 179119 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 827-44 chr5 98016300 98016746 + 3 NA Intergenic Intergenic 144716 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 188-73 chr16 71716069 71716171 + 3 NA promoter-TSS (NM_001289003) promoter-TSS (NM_001289003) -280 NM_001289003 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 799-14 chr14 82084512 82084953 + 3 NA Intergenic MIRb|SINE|MIR -341594 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 505-272 chr6 93031330 93031653 + 3 NA Intergenic Intergenic 388068 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 378-172 chr17 57386139 57386367 + 3 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 129234 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 819-14 chr18 73178813 73179378 + 3 NA intron (NR_034133, intron 3 of 5) L1MA9|LINE|L1 85403 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 776-5 chr1 195832657 195833011 + 3 NA Intergenic Intergenic 255881 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 434-61 chr12 53780938 53781088 + 3 NA Intergenic L2c|LINE|L2 -23979 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 601-128 chr5 139943024 139943352 + 3 NA intron (NM_013983, intron 1 of 10) AluSc8|SINE|Alu 100111 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 554-218 chrX 42268603 42268922 + 3 NA Intergenic L1MB4|LINE|L1 -345208 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 616-13 chr10 30956206 30956515 + 3 NA intron (NR_026560, intron 1 of 6) L1MA6|LINE|L1 43157 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 670-14 chr10 64586419 64586911 + 3 NA Intergenic Intergenic -238863 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 195-244 chr8 137246987 137247075 + 3 NA Intergenic L1PB4|LINE|L1 166557 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 262-370 chr6 55106444 55106547 + 3 NA promoter-TSS (NM_001526) promoter-TSS (NM_001526) 35 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 454-273 chr6 57094741 57094944 + 3 NA intron (NM_001257273, intron 2 of 3) intron (NM_001257273, intron 2 of 3) 4654 NM_001031623 26036 Hs.485628 NM_015555 ENSG00000112200 ZNF451 COASTER|dJ417I1.1 zinc finger protein 451 protein-coding 518-271 chr7 34337781 34338026 + 3 NA Intergenic L1MB7|LINE|L1 -320315 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 508-156 chr3 145561305 145561657 + 3 NA Intergenic L1MA9|LINE|L1 507704 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 407-67 chr12 74152698 74152978 + 3 NA intron (NR_038300, intron 5 of 6) MER103C|DNA|hAT-Charlie 139793 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 338-459 chr6 4393919 4394100 + 3 NA Intergenic Intergenic -94789 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 385-231 chr3 4439646 4439911 + 3 NA intron (NM_001164674, intron 2 of 7) FLAM_C|SINE|Alu 27491 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 877-30 chr6 149052746 149053223 + 3 NA intron (NM_005715, intron 7 of 7) intron (NM_005715, intron 7 of 7) -20323 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 279-106 chr14 78435492 78435652 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 31853 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 620-21 chr10 131503807 131504266 + 3 NA Intergenic L1MEi|LINE|L1 -192315 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 1106-6 chr2 23210988 23211450 + 3 NA Intergenic Intergenic -173960 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 464-191 chr4 184059708 184059969 + 3 NA Intergenic Charlie18a|DNA|hAT-Charlie 154531 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 398-119 chr15 71633677 71633879 + 3 NA intron (NM_001286429, intron 1 of 11) MIRb|SINE|MIR 57761 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 344-176 chr16 62299818 62299949 + 3 NA Intergenic Intergenic -263445 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 642-26 chr12 15198635 15198937 + 3 NA intron (NM_032918, intron 2 of 4) MLT1D|LTR|ERVL-MaLR 22631 NM_032918 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 619-33 chr12 33758886 33759318 + 3 NA Intergenic LTR16B1|LTR|ERVL -263394 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 533-11 chr10 19148340 19148613 + 3 NA intron (NM_001142308, intron 11 of 39) intron (NM_001142308, intron 11 of 39) 99675 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 465-253 chr6 71697747 71697916 + 3 NA Intergenic Intergenic -188872 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 393-274 chr5 37228121 37228429 + 3 NA intron (NM_023073, intron 9 of 51) intron (NM_023073, intron 9 of 51) -20771 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 552-16 chr10 34145242 34145484 + 3 NA intron (NM_001184789, intron 20 of 22) HAL1|LINE|L1 -372683 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 407-304 chr7 87809988 87810164 + 3 NA intron (NM_138290, intron 10 of 11) intron (NM_138290, intron 10 of 11) 66284 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 997-23 chr4 182031385 182031968 + 3 NA Intergenic L1PA10|LINE|L1 112839 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 191-158 chr4 169373760 169373858 + 3 NA Intergenic L1ME3E|LINE|L1 -102853 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 696-55 chr19 9577234 9577792 + 3 NA intron (NM_001308269, intron 1 of 4) L1MA4|LINE|L1 6991 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 435-85 chr15 50967373 50967582 + 3 NA intron (NM_001252127, intron 14 of 20) MLT1D|LTR|ERVL-MaLR 23348 NR_027642 100132724 Hs.730493 NR_027642 DCAF13P3 - DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo 679-45 chr17 71296105 71296557 + 3 NA Intergenic MER77|LTR|ERVL -94152 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 704-60 chr4 61195800 61196185 + 3 NA Intergenic Intergenic -5238 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 352-343 chr3 194505846 194506082 + 3 NA Intergenic L1MC4|LINE|L1 18824 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 375-148 chr15 88970293 88970457 + 3 NA Intergenic L1MA5A|LINE|L1 -56996 NM_001114614 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 490-289 chr8 82465132 82465440 + 3 NA Intergenic Intergenic -446818 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 440-198 chr5 67748846 67749115 + 3 NA Intergenic Intergenic -44233 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 404-127 chr17 47770962 47771203 + 3 NA Intergenic Intergenic 37846 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 574-18 chr11 9109430 9109717 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 15210 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 414-194 chr21 32028548 32028871 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 57586 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 631-103 chr5 88921535 88921794 + 3 NA intron (NR_109941, intron 3 of 3) intron (NR_109941, intron 3 of 3) -17559 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 524-133 chr20 53933369 53933692 + 3 NA Intergenic Intergenic -57821 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 535-196 chr5 30791351 30791642 + 3 NA Intergenic Intergenic -402190 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 827-6 chr10 85070877 85071306 + 3 NA Intergenic L1MA10|LINE|L1 127814 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 579-33 chr14 22090707 22091030 + 3 NA Intergenic L1ME3G|LINE|L1 341885 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 533-161 chr4 81229708 81229907 + 3 NA Intergenic L2c|LINE|L2 -14585 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 757-28 chr2 40676826 40677118 + 3 NA Intergenic HERV9N-int|LTR|ERV1 -164537 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 399-223 chr4 11187215 11187365 + 3 NA Intergenic Intergenic -181537 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 459-248 chr5 153941640 153941899 + 3 NA Intergenic L2b|LINE|L2 -42782 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 475-21 chr10 41899431 41899667 + 3 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 468496 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 512-253 chr7 27027131 27027423 + 3 NA Intergenic Intergenic 68723 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 621-142 chr9 81365324 81365794 + 3 NA Intergenic L1PREC2|LINE|L1 323976 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 406-195 chr3 143824323 143824503 + 3 NA intron (NM_173653, intron 2 of 15) L2a|LINE|L2 24055 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 482-18 chr1 170116671 170116917 + 3 NA Intergenic L2c|LINE|L2 -29253 NM_001136107 149281 Hs.553612 NM_001136107 ENSG00000203740 METTL11B C1orf184|HOMT1B|NTM1B methyltransferase like 11B protein-coding 385-242 chr3 77959135 77959296 + 3 NA Intergenic L1ME1|LINE|L1 89748 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 337-457 chr5 105286311 105286455 + 3 NA Intergenic L1ME3B|LINE|L1 186909 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 383-384 chr8 86245731 86245914 + 3 NA Intergenic L1MA1|LINE|L1 -15441 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 507-42 chr10 130282685 130282927 + 3 NA Intergenic Intergenic 146397 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 556-223 chr8 86924615 86924852 + 3 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 58318 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 511-165 chr3 21388694 21388954 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -16902 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 243-80 chr11 111142964 111143141 + 3 NA Intergenic L2a|LINE|L2 -45734 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 383-123 chr14 104232413 104232632 + 3 NA intron (NR_146612, intron 1 of 2) (TCA)n|Simple_repeat|Simple_repeat 8938 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 477-2 chr1 30041410 30041663 + 3 NA Intergenic MER63B|DNA|hAT-Blackjack -3924 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 288-87 chr12 113993133 113993308 + 3 NA Intergenic AluSz|SINE|Alu -26895 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 589-59 chr19 37808635 37808958 + 3 NA Intergenic Intergenic -8615 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 668-63 chr3 1466450 1466672 + 3 NA Intergenic HAL1|LINE|L1 373537 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 490-133 chr2 14219336 14219593 + 3 NA Intergenic Intergenic 181494 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 698-14 chr10 37832788 37833152 + 3 NA exon (NM_001352470, exon 6 of 6) exon (NM_001352470, exon 6 of 6) 24640 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 741-72 chr8 87784194 87784573 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 89632 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 739-12 chr11 26402018 26402412 + 3 NA intron (NM_031418, intron 1 of 26) L1PA13|LINE|L1 70085 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 531-109 chr2 54807547 54807844 + 3 NA intron (NM_001039753, intron 1 of 40) MER63C|DNA|hAT-Blackjack 82683 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 882-29 chr3 118156857 118157244 + 3 NA Intergenic L1MA7|LINE|L1 -466125 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 882-19 chr18 79930282 79930658 + 3 NA intron (NM_001146345, intron 3 of 4) L1M4b|LINE|L1 21183 NM_025078 80148 Hs.288284 NM_025078 ENSG00000122490 SLC66A2 PQLC1 solute carrier family 66 member 2 protein-coding 510-27 chr10 33407273 33407497 + 3 NA Intergenic Intergenic -72480 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 549-63 chr15 34798947 34799214 + 3 NA intron (NR_120329, intron 2 of 2) MIR|SINE|MIR -3531 NM_005159 70 Hs.118127 NM_005159 ENSG00000159251 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin alpha cardiac muscle 1 protein-coding 640-148 chr9 119783673 119783917 + 3 NA Intergenic Intergenic -151265 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 535-223 chr7 10602095 10602327 + 3 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -100465 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 547-24 chr10 102316696 102316882 + 3 NA intron (NM_001199378, intron 3 of 39) intron (NM_001199378, intron 3 of 39) 71257 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 775-38 chr17 74437719 74438143 + 3 NA intron (NM_018653, intron 1 of 3) intron (NM_018653, intron 1 of 3) 4234 NM_018653 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 494-201 chr4 57941645 57941855 + 3 NA Intergenic Zaphod2|DNA|hAT-Tip100 515878 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 523-115 chr18 69715807 69716051 + 3 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 231944 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 260-140 chr15 24766973 24767139 + 3 NA Intergenic Intergenic -56552 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 383-387 chr8 106420492 106420668 + 3 NA intron (NM_018002, intron 2 of 15) A-rich|Low_complexity|Low_complexity -27344 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 366-449 chr8 114960091 114960322 + 3 NA Intergenic Intergenic 707807 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 437-230 chr5 141181776 141181951 + 3 NA 5' UTR (NM_020957, exon 1 of 1) 5' UTR (NM_020957, exon 1 of 1) 173 NM_020957 57717 Hs.147674 NM_020957 ENSG00000272674 PCDHB16 ME1|PCDH-BETA16|PCDH3X|PCDHB8a protocadherin beta 16 protein-coding 367-259 chr21 29267024 29267177 + 3 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -31822 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 379-138 chr19 36901070 36901229 + 3 NA intron (NM_001037232, intron 5 of 5) L1MB8|LINE|L1 14890 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 526-91 chr16 79973862 79974184 + 3 NA Intergenic Intergenic 178774 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 991-22 chr6 161218636 161219156 + 3 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) 55165 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 477-54 chr11 24749887 24750123 + 3 NA intron (NM_001009909, intron 4 of 11) MLT2B3|LTR|ERVL 252952 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 647-23 chr13 53076114 53076545 + 3 NA Intergenic Intergenic 47516 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 1230-8 chr6 120896561 120897078 + 3 NA Intergenic Intergenic 437661 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 465-86 chr15 35891220 35891378 + 3 NA Intergenic Intergenic -35557 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 284-64 chr11 15173243 15173387 + 3 NA intron (NM_001042536, intron 2 of 12) L1ME4a|LINE|L1 24213 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 437-117 chr19 30576816 30576999 + 3 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 204523 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 478-23 chr10 44795287 44795559 + 3 NA Intergenic LTR88c|LTR|Gypsy? -115893 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 650-133 chr8 137015037 137015392 + 3 NA Intergenic L1MEc|LINE|L1 398374 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 488-116 chr19 30764038 30764350 + 3 NA Intergenic L1MC2|LINE|L1 391810 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 488-211 chr5 60958988 60959266 + 3 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 13922 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 479-29 chr10 116344380 116344752 + 3 NA intron (NM_198515, intron 5 of 8) Tigger3b|DNA|TcMar-Tigger 20118 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 435-76 chr14 48633820 48634095 + 3 NA Intergenic Intergenic -838943 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 736-62 chr4 34187229 34187650 + 3 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 82308 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 688-48 chr15 57784152 57784554 + 3 NA Intergenic Intergenic 77639 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 453-143 chr20 17928315 17928480 + 3 NA Intergenic Intergenic 34549 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 566-36 chr12 64574720 64575173 + 3 NA Intergenic L1M5|LINE|L1 -35549 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 653-43 chr14 77091004 77091300 + 3 NA Intergenic Intergenic -7106 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 233-168 chr2 68970359 68970482 + 3 NA Intergenic Intergenic -4153 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 379-81 chr13 53670372 53670582 + 3 NA Intergenic L1ME3A|LINE|L1 -144942 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 923-22 chr6 39150862 39151225 + 3 NA Intergenic L1MC5a|LINE|L1 -35857 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 516-227 chr6 86106606 86106902 + 3 NA Intergenic Intergenic -428021 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 241-376 chr7 85134227 85134421 + 3 NA Intergenic Intergenic -12393 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 545-22 chr10 52114420 52114756 + 3 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 199540 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 523-267 chr8 83463862 83464080 + 3 NA Intergenic Intergenic 60213 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 469-221 chr5 63549130 63549354 + 3 NA Intergenic Intergenic 413050 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 852-2 chr1 103959339 103959844 + 3 NA Intergenic Intergenic -113432 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 356-12 chr1 82691981 82692177 + 3 NA Intergenic Intergenic -211104 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 715-13 chr12 82024607 82024918 + 3 NA Intergenic L1PB4|LINE|L1 71043 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 328-398 chr4 46983218 46983360 + 3 NA intron (NM_001204267, intron 2 of 7) intron (NM_001204267, intron 2 of 7) 10292 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 502-3 chr1 41445687 41445956 + 3 NA Intergenic Intergenic 38862 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 888-33 chr5 53692970 53693503 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 126446 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 341-196 chr17 52539937 52540113 + 3 NA Intergenic Intergenic 149503 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 323-142 chr14 56013470 56013617 + 3 NA Intergenic Intergenic -104868 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 533-151 chr4 38312017 38312213 + 3 NA Intergenic Intergenic -54799 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 257-34 chr10 17857938 17858049 + 3 NA intron (NM_002438, intron 9 of 29) intron (NM_002438, intron 9 of 29) 12886 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 391-31 chr10 16579670 16579888 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -57900 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 678-109 chr8 134529261 134529699 + 3 NA intron (NM_020863, intron 12 of 15) intron (NM_020863, intron 12 of 15) -68591 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 508-76 chr17 55946248 55946534 + 3 NA Intergenic MIR|SINE|MIR 195286 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 508-248 chr8 132685688 132685881 + 3 NA Intergenic Intergenic -10239 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 746-25 chr14 87787938 87788281 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -132815 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 535-233 chr7 131589291 131589621 + 3 NA Intergenic L1PB4|LINE|L1 -32828 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 398-210 chr3 98940921 98941078 + 3 NA Intergenic Intergenic -39304 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 1150-3 chr11 41162458 41163025 + 3 NA intron (NM_001258419, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger 296895 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 496-295 chr8 128930262 128930591 + 3 NA Intergenic Intergenic 35575 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 382-217 chr2 126522621 126522816 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -133217 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 431-237 chr5 162205177 162205423 + 3 NA Intergenic L1MA9|LINE|L1 137658 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 293-285 chr3 175230824 175231033 + 3 NA intron (NM_207015, intron 2 of 13) L1M5|LINE|L1 40168 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 537-111 chr2 80147849 80148177 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 156739 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 421-148 chr2 121437348 121437579 + 3 NA intron (NM_015282, intron 19 of 38) L1ME3F|LINE|L1 -93417 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 1109-9 chr6 159262013 159262640 + 3 NA intron (NM_032532, intron 19 of 22) intron (NM_032532, intron 19 of 22) -92319 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 414-355 chr9 102348562 102348721 + 3 NA Intergenic MER110A|LTR|ERV1 -170996 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 515-191 chr4 159692977 159693241 + 3 NA intron (NR_146278, intron 2 of 2) THE1C-int|LTR|ERVL-MaLR 84675 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 752-32 chr18 54133839 54134362 + 3 NA Intergenic Intergenic 88312 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 930-3 chr10 34073686 34074273 + 3 NA Intergenic (GAAA)n|Simple_repeat|Simple_repeat -301299 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 618-83 chr3 112859647 112860021 + 3 NA Intergenic L1MB5|LINE|L1 -13884 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 190-155 chr6 53047951 53048047 + 3 NA intron (NM_014920, intron 1 of 13) intron (NM_014920, intron 1 of 13) 13803 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 455-213 chr5 28302638 28302878 + 3 NA Intergenic Intergenic -15093 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 436-214 chr4 91996441 91996728 + 3 NA Intergenic Intergenic 280718 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 817-39 chr4 33596536 33596830 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 443210 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 350-472 chr7 29592004 29592203 + 3 NA Intergenic Intergenic 26570 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 417-192 chr4 36054213 36054410 + 3 NA intron (NR_146893, intron 33 of 36) intron (NR_146893, intron 33 of 36) 189628 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 656-138 chr9 89270412 89270679 + 3 NA Intergenic L1MA8|LINE|L1 -40650 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 519-91 chr2 5108622 5108877 + 3 NA Intergenic L1MB7|LINE|L1 -452527 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 373-316 chr5 31220017 31220187 + 3 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 26416 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1257-10 chr8 49076913 49077573 + 3 NA Intergenic Intergenic 4899 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 533-146 chr3 191688732 191689082 + 3 NA Intergenic LTR22B1|LTR|ERVK 227744 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 725-15 chr11 63496610 63496889 + 3 NA Intergenic L1MA2|LINE|L1 -5582 NM_054108 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 595-65 chr17 5888303 5888514 + 3 NA intron (NR_040000, intron 2 of 3) intron (NR_040000, intron 2 of 3) 116174 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 453-197 chr5 11485594 11485764 + 3 NA intron (NM_001288715, intron 2 of 20) L1M4|LINE|L1 103238 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 336-554 chr8 121492611 121492759 + 3 NA Intergenic MIRb|SINE|MIR -146661 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 594-27 chr11 79093084 79093462 + 3 NA intron (NM_001098816, intron 4 of 33) MLT1J|LTR|ERVL-MaLR 308836 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 616-49 chr15 64017374 64017615 + 3 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 28991 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 936-27 chr5 110841654 110842217 + 3 NA Intergenic Intergenic 102928 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 382-279 chr3 157190286 157190492 + 3 NA Intergenic L1PA13|LINE|L1 -29629 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 338-462 chr6 14239756 14239933 + 3 NA Intergenic L1ME3G|LINE|L1 45610 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 551-184 chr7 4385484 4385811 + 3 NA Intergenic L2a|LINE|L2 -250810 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 383-118 chr14 79235981 79236235 + 3 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 36126 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 575-126 chr3 135322231 135322565 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X 527138 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 428-21 chr1 227249103 227249330 + 3 NA intron (NM_001366019, intron 2 of 36) L1MA2|LINE|L1 69276 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 366-151 chr16 48863997 48864164 + 3 NA Intergenic L2c|LINE|L2 -253900 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 489-31 chr10 83438162 83438477 + 3 NA Intergenic MER101-int|LTR|ERV1 238770 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 182-70 chr17 49046441 49046512 + 3 NA intron (NM_001160423, intron 12 of 12) intron (NM_001160423, intron 12 of 12) 49091 NM_006546 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 1177-2 chr10 120697222 120697870 + 3 NA Intergenic L1MA6|LINE|L1 99597 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 366-60 chr10 99128911 99129060 + 3 NA intron (NM_021828, intron 3 of 11) L1PB1|LINE|L1 106890 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 460-234 chr5 21818553 21818816 + 3 NA intron (NM_004061, intron 8 of 14) intron (NM_004061, intron 8 of 14) -65770 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 921-8 chr19 27564358 27564838 + 3 NA Intergenic ALR/Alpha|Satellite|centr -228833 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 365-164 chr18 10819988 10820165 + 3 NA intron (NM_022068, intron 7 of 51) L1MEf|LINE|L1 -60427 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 505-283 chr7 19893096 19893368 + 3 NA Intergenic L1M3a|LINE|L1 -119615 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 327-490 chr8 87677829 87678056 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 196073 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 534-39 chr11 4963540 4963855 + 3 NA Intergenic L1PA11|LINE|L1 -7984 NM_001004748 401667 Hs.553805 NM_001004748 ENSG00000205496 OR51A2 - olfactory receptor family 51 subfamily A member 2 protein-coding 583-127 chr4 111834457 111834799 + 3 NA Intergenic Intergenic -310826 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 919-19 chr5 33428895 33429352 + 3 NA Intergenic L1P3|LINE|L1 -11573 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 411-31 chr10 76310950 76311106 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 528267 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 939-26 chr7 35324403 35324885 + 3 NA intron (NR_038864, intron 1 of 2) L1MD|LINE|L1 10789 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 392-260 chr5 128690356 128690563 + 3 NA Intergenic L1ME3B|LINE|L1 -152214 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 555-153 chr4 136656982 136657244 + 3 NA Intergenic AluJb|SINE|Alu -536643 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 350-560 chr9 135315895 135316082 + 3 NA Intergenic L1MEg|LINE|L1 -27261 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 496-269 chr7 104542278 104542469 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 213717 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 783-24 chr14 48703422 48703966 + 3 NA Intergenic Intergenic 882686 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 834-12 chr15 24992667 24992998 + 3 NA intron (NR_146177, intron 15 of 147) intron (NR_146177, intron 15 of 147) 5907 NR_001292 338427 NR_001292 ENSG00000239014 SNORD108 HBII-437 small nucleolar RNA, C/D box 108 snoRNA 831-52 chr9 28057637 28058127 + 3 NA intron (NM_152570, intron 5 of 6) L2b|LINE|L2 -484016 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 276-163 chr15 54104487 54104689 + 3 NA intron (NM_001329919, intron 2 of 31) HAL1|LINE|L1 91940 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 324-331 chr22 28549756 28549942 + 3 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 89980 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 737-91 chrX 80541500 80541797 + 3 NA Intergenic L1MA8|LINE|L1 121201 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 547-188 chr5 101179386 101179697 + 3 NA Intergenic Intergenic -276259 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 364-32 chr1 187352586 187352766 + 3 NA intron (NR_126347, intron 3 of 3) L1MD3|LINE|L1 -90952 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 473 chr1 29438362 29438759 + 3 NA Intergenic AluSx|SINE|Alu -88446 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 1005-9 chr19 56710098 56710510 + 3 NA Intergenic Intergenic -38547 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 440-53 chr12 127002223 127002496 + 3 NA intron (NR_104646, intron 2 of 6) MamRep137|DNA|TcMar-Tigger 58038 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 364-391 chr6 136856342 136856523 + 3 NA intron (NM_000288, intron 5 of 9) MLT1K|LTR|ERVL-MaLR 33840 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 469-239 chr6 39500367 39500611 + 3 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -69099 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 460-9 chr1 115173357 115173696 + 3 NA Intergenic Intergenic -84023 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 395-309 chr7 31450475 31450726 + 3 NA Intergenic L2|LINE|L2 -63471 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 581-135 chr5 46167794 46168123 + 3 NA Intergenic ALR/Alpha|Satellite|centr -471578 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 334-206 chr17 31821319 31821497 + 3 NA Intergenic Intergenic 37554 NM_001330176 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 433-112 chr17 65805315 65805529 + 3 NA intron (NR_126542, intron 1 of 5) intron (NR_126542, intron 1 of 5) 21029 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 1133-9 chr5 109508817 109509360 + 3 NA Intergenic MIRc|SINE|MIR -99114 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 590-8 chr1 155043308 155043644 + 3 NA exon (NM_001143687, exon 9 of 16) exon (NM_001143687, exon 9 of 16) 7689 NR_040772 100505666 Hs.657533 NR_040772 DCST1-AS1 - DCST1 antisense RNA 1 ncRNA 748-51 chr2 107648243 107648605 + 3 NA Intergenic L1PA13|LINE|L1 -105688 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 339-569 chr8 79775623 79775773 + 3 NA intron (NR_110954, intron 4 of 5) L1PB4|LINE|L1 7556 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 267-395 chr7 55012470 55012606 + 3 NA Intergenic L1MC1|LINE|L1 -6479 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 470-17 chr1 245937624 245937810 + 3 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 479695 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 688-36 chr13 68519466 68519916 + 3 NA Intergenic Intergenic 365634 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 367-30 chr1 180007976 180008206 + 3 NA intron (NM_014810, intron 8 of 37) intron (NM_014810, intron 8 of 37) 53281 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 555-172 chr6 40469110 40469310 + 3 NA intron (NM_020737, intron 1 of 2) MLT1C|LTR|ERVL-MaLR 90873 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 325-328 chr22 43584684 43584870 + 3 NA intron (NM_198856, intron 22 of 29) L1MCb|LINE|L1 68523 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 529-135 chr22 49390913 49391272 + 3 NA Intergenic Intergenic 152374 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 472-56 chr12 22883724 22883893 + 3 NA Intergenic Intergenic 258637 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 496-133 chr2 69666505 69666709 + 3 NA intron (NM_001320698, intron 2 of 14) L1MB8|LINE|L1 22799 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 461-203 chr4 153764123 153764353 + 3 NA Intergenic Intergenic -4214 NM_173662 285533 Hs.388364 NM_173662 ENSG00000145428 RNF175 - ring finger protein 175 protein-coding 1482 chr3 98936575 98937533 + 3 NA Intergenic L1PA16|LINE|L1 -35359 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 963-15 chr16 24149691 24150094 + 3 NA intron (NM_002738, intron 9 of 16) intron (NM_002738, intron 9 of 16) -53224 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 698-32 chr18 13597009 13597477 + 3 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -13871 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 413-301 chr8 51574021 51574248 + 3 NA intron (NM_144651, intron 3 of 22) L1MD1|LINE|L1 235311 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 629-130 chr8 102631435 102631781 + 3 NA Intergenic L1ME4a|LINE|L1 22356 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 706-62 chr5 156649810 156650185 + 3 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -200298 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 1031-16 chr8 128465684 128466236 + 3 NA intron (NR_121672, intron 2 of 7) MLT1H|LTR|ERVL-MaLR 98719 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 453-18 chr1 221645697 221645897 + 3 NA Intergenic Intergenic 91103 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 502-18 chr1 186885111 186885388 + 3 NA intron (NM_024420, intron 3 of 17) L1MEg|LINE|L1 56300 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 928-9 chr17 34913861 34914375 + 3 NA Intergenic AluSz|SINE|Alu 47342 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 280-191 chr2 51730326 51730517 + 3 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -640227 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 402-323 chr7 90011850 90012098 + 3 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -107426 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 307-383 chr5 44020962 44021146 + 3 NA Intergenic Intergenic -367678 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 409-71 chr14 42921115 42921276 + 3 NA Intergenic Intergenic 1314339 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 698-68 chr5 11882688 11883104 + 3 NA intron (NM_001288717, intron 1 of 20) L1MA9|LINE|L1 21550 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 494-222 chr5 31085934 31086208 + 3 NA Intergenic Intergenic -107615 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 940-37 chr8 58848249 58848689 + 3 NA intron (NM_014729, intron 4 of 8) intron (NM_014729, intron 4 of 8) -188616 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 474-34 chr10 54614451 54614826 + 3 NA intron (NR_134503, intron 3 of 5) intron (NR_134503, intron 3 of 5) -6681 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 506-47 chr10 123932535 123932714 + 3 NA Intergenic Intergenic -40817 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 1036-13 chr2 79645705 79646463 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 3275 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 728-105 chr8 136233843 136234269 + 3 NA Intergenic L1P3|LINE|L1 -296742 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 329-454 chr5 43211946 43212140 + 3 NA intron (NR_072980, intron 1 of 3) intron (NR_072980, intron 1 of 3) 19191 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 893-33 chr3 106848130 106848499 + 3 NA Intergenic Intergenic 392324 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 413-199 chr3 140082931 140083097 + 3 NA intron (NM_022131, intron 1 of 16) L2b|LINE|L2 147829 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 397-8 chr1 154073826 154074031 + 3 NA intron (NM_001159484, intron 16 of 37) MER63A|DNA|hAT-Blackjack 30664 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 422-46 chr11 83951139 83951296 + 3 NA intron (NM_001142699, intron 14 of 27) L1ME4a|LINE|L1 -268792 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 743-54 chr3 123840918 123841309 + 3 NA intron (NM_001321309, intron 2 of 32) L3|LINE|CR1 43219 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 918-8 chr12 61255324 61255849 + 3 NA Intergenic L1M4b|LINE|L1 937253 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 586-34 chr11 81208408 81208623 + 3 NA Intergenic LTR12C|LTR|ERV1 -445712 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 465-325 chrX 112295484 112295753 + 3 NA intron (NM_001004308, intron 2 of 2) intron (NM_001004308, intron 2 of 2) 212593 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 RTL4 Mar4|Mart4|SIRH11|ZCCHC16 retrotransposon Gag like 4 protein-coding 655-8 chr1 114988431 114988923 + 3 NA intron (NR_104211, intron 31 of 32) L1M4c|LINE|L1 -41147 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 875-3 chr11 71226945 71227448 + 3 NA Intergenic L1MD1|LINE|L1 -2400 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 696-51 chr18 7810149 7810586 + 3 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 243051 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 588-22 chr11 90776589 90776941 + 3 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 92437 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 275-318 chr6 118220899 118221114 + 3 NA intron (NM_001029858, intron 2 of 7) intron (NM_001029858, intron 2 of 7) 135103 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 368-277 chr22 40597310 40597477 + 3 NA intron (NM_020831, intron 1 of 14) intron (NM_020831, intron 1 of 14) 39326 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 465-231 chr5 91712067 91712387 + 3 NA Intergenic L1MEc|LINE|L1 -328910 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 398-117 chr15 62632461 62632626 + 3 NA Intergenic Intergenic 12638 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 491-41 chr11 114015466 114015737 + 3 NA Intergenic Intergenic 38101 NM_001161772 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 527-251 chr7 86122737 86123093 + 3 NA Intergenic L1ME1|LINE|L1 -520994 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 362-150 chr14 62281442 62281631 + 3 NA Intergenic Intergenic -141563 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 472-231 chr4 102982864 102983060 + 3 NA intron (NR_047513, intron 3 of 10) L1MC1|LINE|L1 36743 NM_139173 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 289-122 chr12 123321942 123322117 + 3 NA intron (NM_018183, intron 16 of 31) intron (NM_018183, intron 16 of 31) 42814 NR_107039 102466877 NR_107039 ENSG00000284425 MIR8072 hsa-mir-8072 microRNA 8072 ncRNA 845-22 chr20 63146339 63146771 + 3 NA Intergenic L1ME2|LINE|L1 -31945 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 273-31 chr1 219336312 219336469 + 3 NA Intergenic MIRb|SINE|MIR 161421 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 748-3 chr1 73742782 73743244 + 3 NA Intergenic Intergenic 68334 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 441-238 chr7 11062931 11063122 + 3 NA intron (NR_033436, intron 15 of 16) intron (NR_033436, intron 15 of 16) 89154 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 417-157 chr2 185603802 185603974 + 3 NA Intergenic Intergenic 134831 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 797-51 chr7 47010833 47011202 + 3 NA Intergenic L1MDb|LINE|L1 -313895 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 1102-4 chr14 62535302 62536063 + 3 NA Intergenic Intergenic -395709 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 482-256 chr7 89313725 89313978 + 3 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -518114 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 472-47 chr11 106247333 106247625 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -2540 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 421-30 chr10 74711421 74711616 + 3 NA Intergenic L1ME2z|LINE|L1 -113737 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 316-345 chr3 51292270 51292430 + 3 NA intron (NM_004947, intron 27 of 52) L1PA5|LINE|L1 -92941 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 353-382 chr4 98319217 98319470 + 3 NA intron (NM_021159, intron 2 of 14) intron (NM_021159, intron 2 of 14) 57959 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 836-48 chr5 31763268 31763698 + 3 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 124352 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 283-475 chrX 45651498 45651628 + 3 NA Intergenic Intergenic -79525 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 318-459 chr5 136903597 136903742 + 3 NA Intergenic L1MEa|LINE|L1 -224528 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 432-185 chr3 124305071 124305387 + 3 NA intron (NM_001024660, intron 6 of 59) L1MB8|LINE|L1 -69103 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 816-43 chr6 134561537 134561894 + 3 NA Intergenic L1PB2|LINE|L1 -21710 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 371-104 chr14 54092171 54092341 + 3 NA Intergenic Intergenic -135365 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 404-208 chr3 25098505 25098658 + 3 NA intron (NM_001290216, intron 3 of 10) MER58A|DNA|hAT-Charlie -242221 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 146-88 chr8 111667887 111667965 + 3 NA Intergenic Intergenic 291287 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 553-199 chr5 169370169 169370486 + 3 NA Intergenic L1PB3|LINE|L1 -69188 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 454-299 chr7 104537110 104537413 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 208605 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 1179-5 chr5 5563070 5563729 + 3 NA Intergenic L1MB5|LINE|L1 140722 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 404-211 chr3 41601693 41601890 + 3 NA intron (NR_136342, intron 29 of 34) L1MC3|LINE|L1 360312 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 724-89 chr7 19652582 19652949 + 3 NA Intergenic L1PREC2|LINE|L1 52671 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 1055-10 chr2 150649846 150650531 + 3 NA Intergenic Intergenic 21291 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 543-170 chr3 89435998 89436277 + 3 NA intron (NM_005233, intron 13 of 16) AluJb|SINE|Alu 328516 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 468-279 chr6 67386167 67386480 + 3 NA Intergenic L1MEg|LINE|L1 -669028 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 611-8 chr1 209197045 209197318 + 3 NA Intergenic LTR48|LTR|ERV1 -128275 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 538-119 chr2 122274851 122275213 + 3 NA Intergenic Intergenic 519381 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 392-29 chr10 63956169 63956361 + 3 NA Intergenic Ricksha_0|DNA|MULE-MuDR -434375 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 418-290 chr8 113976541 113976719 + 3 NA Intergenic Intergenic -539691 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 445-255 chr7 72195681 72196028 + 3 NA intron (NM_001363460, intron 2 of 5) L1MB8|LINE|L1 141537 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 780-8 chr10 81275367 81275714 + 3 NA Intergenic Intergenic -599654 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 519-257 chr9 117252938 117253141 + 3 NA intron (NM_014010, intron 2 of 21) intron (NM_014010, intron 2 of 21) -71838 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 376-383 chr7 80252897 80253077 + 3 NA Intergenic L1P4|LINE|L1 117203 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 834-27 chr21 32236857 32237316 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 41963 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 497-240 chr5 158035404 158035618 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -176366 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 532-260 chr8 18133766 18134037 + 3 NA Intergenic L1MB3|LINE|L1 -36566 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 470-72 chr14 57344077 57344349 + 3 NA Intergenic Intergenic -46373 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 284-281 chr4 33676550 33676651 + 3 NA Intergenic L1ME2|LINE|L1 363293 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 477-272 chr8 59441421 59441731 + 3 NA Intergenic L1MA2|LINE|L1 322366 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 255-445 chr8 133775405 133775547 + 3 NA TTS (NR_125422) TTS (NR_125422) 1876 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 579-71 chr2 110719482 110719862 + 3 NA Intergenic Intergenic -12901 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 570-63 chr14 78002573 78002896 + 3 NA Intergenic L1MEf|LINE|L1 -167639 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 859-38 chr8 140016079 140016591 + 3 NA intron (NM_001160372, intron 18 of 22) MER81|DNA|hAT-Blackjack 84200 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 382-391 chr7 114852069 114852218 + 3 NA Intergenic Intergenic -70011 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 614-73 chr21 34048667 34048881 + 3 NA Intergenic L1ME3B|LINE|L1 -24804 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 399-317 chr8 135430455 135430606 + 3 NA Intergenic MIRb|SINE|MIR -26926 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 854-44 chr9 104466038 104466408 + 3 NA Intergenic Intergenic -38040 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 538-208 chr5 165738416 165738662 + 3 NA Intergenic Intergenic 1187831 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 577-133 chr4 58297273 58297655 + 3 NA Intergenic Intergenic 238864 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 270-323 chr6 14262971 14263124 + 3 NA Intergenic L1MEg|LINE|L1 22407 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 471-120 chr19 31850478 31850797 + 3 NA Intergenic L1MC3|LINE|L1 -175225 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 518-167 chr21 45047278 45047533 + 3 NA Intergenic L1M7|LINE|L1 25806 NR_027292 728039 Hs.309203 NM_032653 ENSG00000235374 SSR4P1 C21orf122|PRED57|PRED90 signal sequence receptor subunit 4 pseudogene 1 pseudo 648-88 chr3 65074469 65074816 + 3 NA Intergenic Intergenic -386642 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 569-7 chr1 106529616 106529874 + 3 NA Intergenic L1PA15|LINE|L1 -288494 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 444-12 chr1 104112374 104112600 + 3 NA Intergenic Intergenic 39464 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 384-46 chr10 113429413 113429648 + 3 NA Intergenic L1ME4a|LINE|L1 -121301 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 453-192 chr4 175514702 175515013 + 3 NA Intergenic Intergenic 272819 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 551-23 chr10 107316015 107316348 + 3 NA Intergenic Intergenic -151475 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 420-98 chr17 35480350 35480524 + 3 NA intron (NM_001363830, intron 2 of 4) L1M5|LINE|L1 7302 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 263-48 chr10 56871951 56872121 + 3 NA Intergenic L1PA7|LINE|L1 432523 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 434-207 chr4 62811137 62811353 + 3 NA Intergenic MLT2A2|LTR|ERVL -649480 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 309-29 chr1 214154461 214154681 + 3 NA Intergenic Intergenic -126588 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 708-37 chr2 67440982 67441553 + 3 NA Intergenic L1MA2|LINE|L1 43934 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 397-255 chr5 74399907 74400093 + 3 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 77514 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 380-426 chrX 40319871 40320096 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger 57066 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 573-92 chr2 40021559 40021895 + 3 NA intron (NR_038441, intron 2 of 4) THE1B-int|LTR|ERVL-MaLR 104093 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 424-6 chr1 96923410 96923667 + 3 NA Intergenic Intergenic -172385 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 543-163 chr22 49985216 49985451 + 3 NA Intergenic L1M4|LINE|L1 22467 NR_106879 102465493 NR_106879 ENSG00000276753 MIR6821 hsa-mir-6821 microRNA 6821 ncRNA 748-45 chr19 40062758 40063141 + 3 NA Intergenic L1M4b|LINE|L1 -6718 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 699-109 chrX 64354775 64355119 + 3 NA intron (NM_017677, intron 3 of 13) intron (NM_017677, intron 3 of 13) 40505 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 421-33 chr10 93227239 93227387 + 3 NA Intergenic L1MC4|LINE|L1 153420 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 374-25 chr1 248692899 248693085 + 3 NA Intergenic Intergenic -4070 NR_125950 101928226 NR_125950 LYPD9P - LY6/PLAUR domain containing 9, pseudogene pseudo 357-37 chr10 64212449 64212667 + 3 NA Intergenic Intergenic -612970 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 839-36 chr3 193099208 193099782 + 3 NA Intergenic MER20|DNA|hAT-Charlie -141727 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 393-374 chr8 138292263 138292481 + 3 NA intron (NM_015912, intron 3 of 19) L1M3|LINE|L1 204889 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 979-8 chr15 93259043 93259609 + 3 NA Intergenic MER44B|DNA|TcMar-Tigger 53260 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 392-164 chr2 184402361 184402564 + 3 NA Intergenic L3|LINE|CR1 23487 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 613-20 chr10 112187406 112187828 + 3 NA Intergenic L1MEc|LINE|L1 -3852 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 1021-17 chr9 118062112 118062543 + 3 NA Intergenic L1ME1|LINE|L1 357924 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 452-81 chr14 72264508 72264768 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -252182 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 464-140 chr2 214078561 214078759 + 3 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) 320593 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 461-209 chr5 26088748 26088926 + 3 NA Intergenic L2a|LINE|L2 897884 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 568-71 chr16 21713801 21714135 + 3 NA intron (NM_170664, intron 3 of 18) MamGypLTR3a|LTR|Gypsy 9005 NM_170664 146183 Hs.408336 NM_144672 ENSG00000155719 OTOA CT108|DFNB22 otoancorin protein-coding 576-154 chr6 137982416 137982816 + 3 NA Intergenic Intergenic -36816 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 479-174 chr4 174129523 174129800 + 3 NA intron (NR_125896, intron 1 of 4) intron (NR_125896, intron 1 of 4) 90737 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 637-123 chrX 45177885 45178242 + 3 NA intron (NM_024689, intron 2 of 2) intron (NM_024689, intron 2 of 2) 22813 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 446-153 chr2 122615683 122615886 + 3 NA Intergenic L1M4|LINE|L1 457697 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 715-63 chr4 84612339 84612699 + 3 NA intron (NM_001263, intron 3 of 12) intron (NM_001263, intron 3 of 12) 29392 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 389-297 chr5 124851719 124851984 + 3 NA Intergenic AluSz|SINE|Alu -106739 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 360-130 chr14 81642637 81642784 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -19649 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 676-124 chrX 45932995 45933358 + 3 NA Intergenic Intergenic -81686 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 393-332 chr7 70086171 70086331 + 3 NA intron (NM_015570, intron 2 of 18) L1ME1|LINE|L1 487776 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 573-3 chr1 64120631 64120997 + 3 NA intron (NM_005012, intron 4 of 8) intron (NM_005012, intron 4 of 8) -7023 NR_110665 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 496-118 chr18 40862663 40862834 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 657929 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 371-215 chr20 18370848 18371016 + 3 NA Intergenic L1PB4|LINE|L1 -8117 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 310-366 chr4 57885331 57885534 + 3 NA Intergenic L1MA9|LINE|L1 459560 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 533-77 chr17 56760113 56760353 + 3 NA Intergenic MIRc|SINE|MIR 73687 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 321-292 chr2 114575104 114575299 + 3 NA intron (NM_001321908, intron 2 of 25) A-rich|Low_complexity|Low_complexity 113624 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 497-264 chr7 62762405 62762705 + 3 NA Intergenic ALR/Alpha|Satellite|centr 541501 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 646-50 chr18 77816525 77816921 + 3 NA Intergenic MER21C|LTR|ERVL 177004 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 528-246 chr8 64229760 64230101 + 3 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 138628 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 469-297 chr9 75497398 75497710 + 3 NA Intergenic L2|LINE|L2 -393090 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 516-149 chr20 6187144 6187353 + 3 NA Intergenic MIR|SINE|MIR -63704 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 594-39 chr12 119095482 119095838 + 3 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 80824 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 338-47 chr10 11644549 11644690 + 3 NA Intergenic AluJo|SINE|Alu -32830 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 713-10 chr1 238162455 238162828 + 3 NA Intergenic L1MA2|LINE|L1 -271719 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 805-5 chr10 57675304 57675642 + 3 NA Intergenic Intergenic -370914 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 460-197 chr3 77908395 77908684 + 3 NA Intergenic L1MA9|LINE|L1 140424 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 641-93 chr5 9987219 9987562 + 3 NA Intergenic MIR3|SINE|MIR -83566 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 209-225 chr4 64553419 64553544 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -144021 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1158-6 chr2 89792402 89792981 + 3 NA Intergenic Intergenic -154784 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 749-78 chr5 96272465 96272869 + 3 NA intron (NR_130776, intron 1 of 4) L1MA4|LINE|L1 159492 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 688-105 chr8 87038998 87039395 + 3 NA intron (NM_173538, intron 4 of 10) HAL1|LINE|L1 172781 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 430-336 chr9 87361734 87361963 + 3 NA Intergenic L1MA3|LINE|L1 -135380 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 558-27 chr10 111705290 111705648 + 3 NA Intergenic Intergenic 478296 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 282-388 chr5 121122499 121122617 + 3 NA Intergenic L1ME3|LINE|L1 -199992 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 310-393 chr5 24482581 24482726 + 3 NA Intergenic L2a|LINE|L2 162325 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 453-162 chr3 77884196 77884422 + 3 NA Intergenic Intergenic 164654 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 552-29 chr10 131493598 131493817 + 3 NA Intergenic Intergenic -181986 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 560-17 chr10 54656140 54656413 + 3 NA TTS (NR_134503) TTS (NR_134503) -48319 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 223-246 chr4 45978480 45978608 + 3 NA Intergenic Charlie1|DNA|hAT-Charlie 145510 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 526-75 chr14 42306472 42306731 + 3 NA Intergenic Intergenic 699745 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 623-37 chr15 61661381 61661701 + 3 NA Intergenic Intergenic -68377 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 655-103 chr5 180839233 180839710 + 3 NA Intergenic L1PA15|LINE|L1 -7853 NR_045680 100859930 Hs.655606 NR_045680 ENSG00000278970 HEIH HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA ncRNA 388-169 chr2 128877047 128877346 + 3 NA Intergenic Intergenic 12596 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 442-52 chr12 21345702 21345925 + 3 NA intron (NM_134431, intron 2 of 15) intron (NM_134431, intron 2 of 15) -9147 NM_001329201 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 680-75 chr20 40797396 40797792 + 3 NA Intergenic L2c|LINE|L2 -82971 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 432-46 chr11 34478831 34479077 + 3 NA 3' UTR (NM_001243081, exon 6 of 6) 3' UTR (NM_001243081, exon 6 of 6) 32770 NM_198381 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 694-132 chr8 131409076 131409400 + 3 NA Intergenic Intergenic -368329 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 559-54 chr15 65680583 65680815 + 3 NA intron (NM_005848, intron 22 of 31) Tigger1|DNA|TcMar-Tigger 16237 NR_145750 109617020 NR_145750 ENSG00000238311 SNORD13E - small nucleolar RNA, C/D box 13E snoRNA 524-8 chr1 77500100 77500318 + 3 NA intron (NM_012093, intron 10 of 13) MamGypsy2-I|LTR|Gypsy 182449 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 564-71 chr16 79856511 79856858 + 3 NA Intergenic L1PA8A|LINE|L1 61435 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 483-271 chr8 114054818 114055072 + 3 NA Intergenic MIR|SINE|MIR -618006 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 420-150 chr2 134225256 134225469 + 3 NA intron (NM_001371457, intron 1 of 16) MER5A1|DNA|hAT-Charlie -28710 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 807-26 chr2 103579243 103579853 + 3 NA Intergenic L1MB7|LINE|L1 -595119 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 570-19 chr10 9593012 9593253 + 3 NA Intergenic L1ME1|LINE|L1 -297539 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 515-14 chr1 216320899 216321153 + 3 NA intron (NM_206933, intron 9 of 71) L1ME3G|LINE|L1 102370 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 429-5 chr1 72480870 72481086 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -198439 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 340-371 chr3 99161274 99161429 + 3 NA Intergenic L1MEf|LINE|L1 -259656 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 420-222 chr5 9475931 9476168 + 3 NA intron (NM_003966, intron 1 of 22) L1MC4a|LINE|L1 -35284 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 561-51 chr12 125256407 125256751 + 3 NA intron (NM_001366854, intron 1 of 8) MER58A|DNA|hAT-Charlie -70037 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 486-323 chrX 75028872 75029086 + 3 NA Intergenic L1PA16|LINE|L1 -103527 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 394-38 chr10 36228128 36228301 + 3 NA Intergenic L1MB1|LINE|L1 449912 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 451-117 chr2 112989488 112989785 + 3 NA Intergenic L1MA8|LINE|L1 11630 NM_019618 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 506-293 chr8 133749554 133749742 + 3 NA Intergenic MER33|DNA|hAT-Charlie 27704 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 398-199 chr3 17300033 17300236 + 3 NA intron (NM_014744, intron 14 of 21) intron (NM_014744, intron 14 of 21) 366938 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 753-6 chr10 26026886 26027233 + 3 NA intron (NM_017433, intron 10 of 34) intron (NM_017433, intron 10 of 34) 92830 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 731-56 chr5 4475951 4476480 + 3 NA Intergenic Intergenic -297266 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 492-204 chr5 31745341 31745601 + 3 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 106340 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 319-293 chr20 53170288 53170490 + 3 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -14894 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 325-499 chr7 45588065 45588254 + 3 NA intron (NM_001281768, intron 2 of 9) L1MC3|LINE|L1 13791 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 348-175 chr16 80405404 80405551 + 3 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -135257 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 537-42 chr11 60267492 60267812 + 3 NA Intergenic Intergenic -13014 NM_001243266 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 440-228 chr6 148091662 148091957 + 3 NA Intergenic L1M3c|LINE|L1 -180519 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 828-32 chr3 143920737 143921247 + 3 NA Intergenic MLT2A1|LTR|ERVL -50806 NM_173552 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 334-467 chr6 120246882 120247097 + 3 NA Intergenic L2|LINE|L2 231810 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 1020-14 chr4 30426946 30427522 + 3 NA Intergenic Intergenic -293135 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 419-72 chr12 58519499 58519748 + 3 NA Intergenic MIRb|SINE|MIR -72079 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 550-29 chr10 56084586 56084834 + 3 NA Intergenic MER90a|LTR|ERV1 276549 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 1134-14 chr6 27450861 27451541 + 3 NA 3' UTR (NM_001318893, exon 6 of 6) 3' UTR (NM_001318893, exon 6 of 6) 21697 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 336-148 chr13 44085926 44086075 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -24549 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 472-132 chr18 47659449 47659622 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 271124 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 738-5 chr10 33148516 33148881 + 3 NA Intergenic L1MB3|LINE|L1 -31891 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 223-108 chr16 60517810 60517962 + 3 NA Intergenic L1MA4A|LINE|L1 -158093 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 851-34 chr4 38242526 38242882 + 3 NA Intergenic Intergenic 122750 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 839-26 chr2 213461366 213461753 + 3 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 177095 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 675-48 chr20 28812707 28813076 + 3 NA Intergenic ALR/Alpha|Satellite|centr -210226 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 754-18 chr14 52397375 52397827 + 3 NA Intergenic Intergenic 83289 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 542-67 chr15 75421577 75421842 + 3 NA intron (NM_015477, intron 3 of 20) intron (NM_015477, intron 3 of 20) 29981 NM_015477 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 425-169 chr21 28102437 28102619 + 3 NA intron (NR_126011, intron 2 of 2) L4_C_Mam|LINE|RTE-X 12125 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 435-195 chr5 83748389 83748617 + 3 NA Intergenic L1M4|LINE|L1 -27648 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 410-14 chr1 164074926 164075142 + 3 NA Intergenic MIRc|SINE|MIR -484326 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 500-107 chr17 54387682 54388015 + 3 NA Intergenic Intergenic -512843 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 571-24 chr10 127847082 127847346 + 3 NA Intergenic Intergenic 45727 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 398-161 chr2 53934056 53934257 + 3 NA intron (NM_014614, intron 8 of 46) intron (NM_014614, intron 8 of 46) 36837 NM_014614 23198 Hs.413801 NM_014614 ENSG00000068878 PSME4 PA200 proteasome activator subunit 4 protein-coding 610-89 chr2 146859014 146859367 + 3 NA Intergenic MamRep605|LTR?|LTR? 272133 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 542-213 chr7 157938047 157938365 + 3 NA intron (NM_130843, intron 10 of 21) intron (NM_130843, intron 10 of 21) 83621 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 482-105 chr18 3979380 3979621 + 3 NA intron (NR_102696, intron 1 of 4) L1MA7|LINE|L1 17147 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 391-120 chr15 76635493 76635672 + 3 NA intron (NR_148227, intron 21 of 32) L1MB4|LINE|L1 48935 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 465-39 chr10 121679964 121680195 + 3 NA Intergenic MIR|SINE|MIR -81621 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 586-50 chr14 61861181 61861515 + 3 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 48645 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 543-154 chr20 58121100 58121370 + 3 NA Intergenic L1MC3|LINE|L1 -29667 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 353-472 chr6 164726726 164726903 + 3 NA Intergenic L1MC5a|LINE|L1 95249 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 754-86 chrX 74894822 74895379 + 3 NA intron (NM_001008537, intron 1 of 3) L1M1|LINE|L1 30352 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 682-108 chr8 137776756 137777147 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 306594 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 466-10 chr1 110969582 110969814 + 3 NA Intergenic L1PA13|LINE|L1 -5754 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 1184-3 chr14 53825824 53826630 + 3 NA Intergenic L1PB4|LINE|L1 122257 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 724-11 chr12 2574389 2574692 + 3 NA intron (NM_199460, intron 13 of 49).2 intron (NM_199460, intron 13 of 49).2 97680 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 686-39 chr2 49530054 49530399 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -375699 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 473-120 chr19 30182441 30182751 + 3 NA Intergenic L1MEf|LINE|L1 -189788 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 177-40 chr12 127514368 127514463 + 3 NA Intergenic L1MC4a|LINE|L1 122052 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 258-52 chr10 57381297 57381459 + 3 NA Intergenic Intergenic -76819 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 475-204 chr4 45539695 45539896 + 3 NA Intergenic L1MEi|LINE|L1 584259 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 657-19 chr12 19021463 19021719 + 3 NA Intergenic LTR26C|LTR|ERV1 -108142 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 496-27 chr10 10184892 10185184 + 3 NA Intergenic Intergenic 126316 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 673-96 chr5 24628932 24629234 + 3 NA intron (NM_001362460, intron 1 of 9) intron (NM_001362460, intron 1 of 9) 15895 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 519-84 chr18 38758795 38759045 + 3 NA Intergenic Intergenic 863255 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 420-164 chr20 7916098 7916271 + 3 NA intron (NM_017545, intron 2 of 7) intron (NM_017545, intron 2 of 7) 24274 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 431-155 chr2 210784155 210784421 + 3 NA Intergenic Intergenic 166717 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 701-94 chr8 77884398 77884858 + 3 NA Intergenic Intergenic 433931 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 636-136 chr7 64779224 64779517 + 3 NA Intergenic L1MB2|LINE|L1 -15058 NM_001271638 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 965-14 chr22 26411052 26411538 + 3 NA Intergenic Intergenic -17965 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 338-132 chr12 82292565 82292770 + 3 NA Intergenic Intergenic 65720 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 405-217 chr4 28208417 28208613 + 3 NA Intergenic Intergenic -611067 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 523-170 chr3 7423396 7423762 + 3 NA intron (NM_000844, intron 5 of 9) intron (NM_000844, intron 5 of 9) 111705 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 509-120 chr2 144252476 144252828 + 3 NA intron (NM_001354354, intron 1 of 12) L1MC2|LINE|L1 -3953 NR_148872 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 1492-3 chr2 108118982 108119655 + 3 NA Intergenic Intergenic -66563 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 488-110 chr17 72800031 72800268 + 3 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -159677 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 297-410 chr6 94292296 94292521 + 3 NA Intergenic L1MD3|LINE|L1 574105 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 602-128 chr7 154634864 154635193 + 3 NA intron (NM_001290252, intron 5 of 23) intron (NM_001290252, intron 5 of 23) -293489 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 485-20 chr1 223147502 223147808 + 3 NA Intergenic L1M5|LINE|L1 -4407 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 433-176 chr3 107292506 107292775 + 3 NA intron (NR_028302, intron 2 of 3) intron (NR_028302, intron 2 of 3) 51948 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 1344-4 chr5 110232388 110233357 + 3 NA Intergenic L1MA4A|LINE|L1 281043 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 578-176 chr8 103640576 103641082 + 3 NA intron (NM_001348497, intron 1 of 22) L1MD3|LINE|L1 -138919 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 553-195 chr5 133379029 133379391 + 3 NA intron (NM_015082, intron 4 of 15) L1M4b|LINE|L1 48496 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 488-40 chr10 127762720 127762889 + 3 NA Intergenic L1MCb|LINE|L1 25619 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 549-219 chr8 141613767 141613969 + 3 NA Intergenic Intergenic -106638 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 955-19 chr6 125028763 125029248 + 3 NA intron (NM_152553, intron 3 of 8) intron (NM_152553, intron 3 of 8) 45637 NM_152553 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 347-7 chr1 45354088 45354248 + 3 NA intron (NM_007170, intron 5 of 10) intron (NM_007170, intron 5 of 10) -13698 NM_001350651 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 415-282 chr8 87568141 87568339 + 3 NA Intergenic UCON29|DNA|PiggyBac? 305775 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 840-38 chr4 33596939 33597439 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 442704 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 533-188 chr5 125073334 125073615 + 3 NA intron (NR_109882, intron 2 of 5) L1MA9|LINE|L1 36643 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 548-131 chr20 712184 712466 + 3 NA Intergenic Intergenic -36523 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 341-68 chr10 82111059 82111263 + 3 NA intron (NR_163253, intron 2 of 10) L3|LINE|CR1 121759 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 549-70 chr16 5074810 5075176 + 3 NA intron (NM_019109, intron 3 of 12) AluJr|SINE|Alu 2745 NM_001330504 56052 Hs.592086 NM_019109 ENSG00000033011 ALG1 CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1 ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase protein-coding 381-11 chr1 110271914 110272144 + 3 NA Intergenic Intergenic 61715 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 377-33 chr10 10801616 10801778 + 3 NA intron (NM_001326327, intron 1 of 14) intron (NM_001326327, intron 1 of 14) 2972 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 397-186 chr20 42561602 42561798 + 3 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -123783 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 739-56 chr5 25211740 25212222 + 3 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 21028 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 442-137 chr2 100534562 100534781 + 3 NA Intergenic Intergenic -28322 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 610-82 chr2 47549165 47549532 + 3 NA intron (NM_022055, intron 1 of 1) L1MEc|LINE|L1 20983 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 390-353 chr7 56224490 56224688 + 3 NA Intergenic Intergenic -108172 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 517-298 chrX 63445126 63445330 + 3 NA intron (NR_152612, intron 1 of 2) L1ME3|LINE|L1 -93896 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 844-10 chr11 97812648 97813006 + 3 NA Intergenic Intergenic -1208122 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 705-23 chr12 46108710 46109078 + 3 NA Intergenic L1MEd|LINE|L1 -118320 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 447-45 chr11 103563624 103563792 + 3 NA Intergenic AluJb|SINE|Alu -286198 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 453-59 chr12 111234094 111234352 + 3 NA intron (NM_015267, intron 3 of 21) intron (NM_015267, intron 3 of 21) -69919 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 423-170 chr3 1447501 1447737 + 3 NA Intergenic Intergenic 354595 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 651-78 chr22 19365616 19365985 + 3 NA intron (NM_003325, intron 15 of 24) 7SLRNA|srpRNA|srpRNA 65933 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 517-22 chr1 232534991 232535323 + 3 NA Intergenic Intergenic -19549 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 738-25 chr16 5045011 5045622 + 3 NA intron (NM_152459, intron 7 of 7) intron (NM_152459, intron 7 of 7) -11381 NM_016256 51172 Hs.21334 NM_016256 ENSG00000103174 NAGPA APAA|UCE N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase protein-coding 436-47 chr11 57000861 57001066 + 3 NA Intergenic HUERS-P2-int|LTR|ERV1 12049 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 420-271 chr7 83411252 83411550 + 3 NA intron (NM_001178129, intron 5 of 16) intron (NM_001178129, intron 5 of 16) 230030 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 547-91 chr19 50060948 50061271 + 3 NA intron (NR_138096, intron 1 of 4) intron (NR_138096, intron 1 of 4) 10520 NR_027257 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 556-21 chr10 49168188 49168466 + 3 NA intron (NM_001288742, intron 1 of 4) intron (NM_001288742, intron 1 of 4) 20064 NM_001288740 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 313-396 chr4 97460382 97460552 + 3 NA intron (NR_102713, intron 3 of 5) L1MEd|LINE|L1 93541 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 380-367 chr7 54217011 54217192 + 3 NA Intergenic L1M1|LINE|L1 -113596 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 421-40 chr11 70414892 70415111 + 3 NA intron (NM_005231, intron 6 of 17) intron (NM_005231, intron 6 of 17) 16472 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 403-228 chr4 100277638 100277893 + 3 NA Intergenic Intergenic -87297 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 569-53 chr13 56645038 56645342 + 3 NA Intergenic Intergenic -495728 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 670-105 chr6 140645849 140646168 + 3 NA Intergenic MLT2A1|LTR|ERVL -37806 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 299-445 chr8 60285567 60285717 + 3 NA Intergenic L2c|LINE|L2 -4242 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 396-308 chr6 48724199 48724380 + 3 NA Intergenic L1MA4|LINE|L1 -655600 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 394-255 chr5 17666851 17667061 + 3 NA Intergenic L1MA8|LINE|L1 -11318 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 604-60 chr16 75316354 75316565 + 3 NA intron (NM_006324, intron 5 of 6) AluJr|SINE|Alu -48452 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 278-256 chr22 16850045 16850206 + 3 NA Intergenic LTR57-int|LTR|ERVL 22651 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 309-587 chrX 99365342 99365490 + 3 NA Intergenic L1M1|LINE|L1 1044857 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 377-406 chr8 98806207 98806397 + 3 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) 19369 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 859-26 chr3 124670246 124670625 + 3 NA intron (NM_007064, intron 14 of 26) intron (NM_007064, intron 14 of 26) -59931 NR_033434 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 317-88 chr11 84001547 84001714 + 3 NA intron (NM_001142699, intron 11 of 27) L1MA4A|LINE|L1 271650 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 405-308 chr7 111653197 111653356 + 3 NA Intergenic Intergenic -90759 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 499-135 chr2 189340104 189340336 + 3 NA Intergenic LOR1-int|LTR|ERV1 -101213 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 523-275 chr8 107687766 107688119 + 3 NA Intergenic Intergenic -190024 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 492-201 chr5 8090817 8091025 + 3 NA Intergenic Intergenic 221773 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 411-252 chr6 62382277 62382512 + 3 NA Intergenic Intergenic -96167 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 319-193 chr17 72080735 72080893 + 3 NA non-coding (NR_103737, exon 4 of 4) non-coding (NR_103737, exon 4 of 4) 8481 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 222-85 chr12 62670652 62670736 + 3 NA intron (NM_020700, intron 8 of 9) X2_LINE|LINE|CR1 67008 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 319-417 chr5 85500346 85500488 + 3 NA Intergenic L1MC4a|LINE|L1 -782027 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 545-63 chr13 66424163 66424508 + 3 NA intron (NM_001318373, intron 3 of 3) L3|LINE|CR1 206085 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 895-9 chr14 62705365 62705821 + 3 NA 3' UTR (NM_172375, exon 10 of 10) 3' UTR (NM_172375, exon 10 of 10) 339865 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 332-52 chr10 26461549 26461713 + 3 NA intron (NM_019043, intron 2 of 14) L1M5|LINE|L1 23290 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 619-38 chr13 74365305 74365785 + 3 NA Intergenic Intergenic 53570 NR_144452 100288208 Hs.532467 NM_001013669 ENSG00000177596 LOC100288208 - uncharacterized LOC100288208 ncRNA 473-166 chr22 25557823 25558096 + 3 NA Intergenic L2a|LINE|L2 -6716 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 607-89 chr20 62631961 62632201 + 3 NA Intergenic L1MB3|LINE|L1 -10422 NM_016354 28231 Hs.235782 NM_016354 ENSG00000101187 SLCO4A1 OATP-E|OATP1|OATP4A1|OATPE|OATPRP1|POAT|SLC21A12 solute carrier organic anion transporter family member 4A1 protein-coding 466-258 chr8 10461741 10461922 + 3 NA Intergenic L1M8|LINE|L1 -12734 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 359-334 chr3 147787927 147788095 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -290148 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 430-182 chr22 48404511 48404678 + 3 NA Intergenic Intergenic -84959 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 1277-5 chr5 22286535 22287287 + 3 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -73061 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 453-88 chr17 30065589 30065741 + 3 NA intron (NM_198529, intron 14 of 22) AluSc|SINE|Alu -51142 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 346-209 chr18 39871763 39871910 + 3 NA intron (NR_151703, intron 6 of 8) MIR3|SINE|MIR 30127 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 441-171 chr3 190391731 190392010 + 3 NA intron (NM_006580, intron 1 of 4) intron (NM_006580, intron 1 of 4) 3998 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 408-210 chr3 66282645 66282848 + 3 NA intron (NM_001350992, intron 4 of 8) L1MD2|LINE|L1 61743 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 567-127 chr4 31919107 31919470 + 3 NA Intergenic Intergenic -78091 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 604-41 chr12 133193758 133194101 + 3 NA intron (NM_152943, intron 6 of 6) intron (NM_152943, intron 6 of 6) 12434 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 455-79 chr15 62182435 62182694 + 3 NA Intergenic L1MA4|LINE|L1 -17279 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 680-50 chr2 9233222 9233574 + 3 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 26586 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 881-16 chr18 6388670 6389066 + 3 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) -14443 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 441-168 chr3 163021330 163021625 + 3 NA Intergenic Intergenic 281824 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 442-113 chr18 57174928 57175173 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -3856 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 556-220 chr8 79362911 79363123 + 3 NA Intergenic AluJr4|SINE|Alu 30829 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 455-70 chr14 48978851 48979101 + 3 NA Intergenic Intergenic 607404 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 441-157 chr3 44744023 44744235 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 14494 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 479-206 chr5 156966363 156966616 + 3 NA Intergenic Intergenic -3263 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 855-11 chr12 119377641 119378122 + 3 NA intron (NM_178499, intron 1 of 13) LTR9D|LTR|ERV1 43152 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 403-148 chr2 643146 643383 + 3 NA Intergenic Intergenic 33440 NM_001352681 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 536-49 chr11 81028275 81028557 + 3 NA Intergenic Intergenic -265613 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 333-389 chr4 60720601 60720765 + 3 NA Intergenic LTR49-int|LTR|ERV1 -201936 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 536-199 chr6 65114430 65114735 + 3 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -186836 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 472-54 chr12 20525786 20525961 + 3 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -45991 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 424-241 chr6 119001812 119002130 + 3 NA intron (NM_024581, intron 9 of 17) intron (NM_024581, intron 9 of 17) -66809 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 362-213 chr2 65877398 65877578 + 3 NA Intergenic Intergenic -444889 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 297-518 chr9 135833646 135833771 + 3 NA intron (NM_015447, intron 7 of 16) L1MA9|LINE|L1 73838 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 405-211 chr3 156399309 156399535 + 3 NA intron (NM_172159, intron 1 of 13) intron (NM_172159, intron 1 of 13) 47514 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 519 chr1 32484396 32484743 + 3 NA intron (NM_001145720, intron 3 of 3) MSTA|LTR|ERVL-MaLR 19497 NM_001145720 728116 Hs.647658 NM_001145720 ENSG00000273274 ZBTB8B ZNF916B zinc finger and BTB domain containing 8B protein-coding 260-8 chr1 91168802 91168961 + 3 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat -146626 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 515-186 chr4 98764791 98765066 + 3 NA Intergenic L1MB7|LINE|L1 106026 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 382-17 chr1 176090998 176091146 + 3 NA intron (NM_022457, intron 9 of 19) L1ME3F|LINE|L1 116172 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 338-559 chr8 119291833 119292074 + 3 NA Intergenic L1MA8|LINE|L1 -33218 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 474-191 chr3 192044010 192044312 + 3 NA Intergenic L1M1|LINE|L1 -194469 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 568-62 chr15 63967373 63967579 + 3 NA intron (NM_014326, intron 4 of 11) AluSx1|SINE|Alu 39202 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 619-66 chr2 37964219 37964525 + 3 NA intron (NR_102712, intron 2 of 3) L1MB3|LINE|L1 13908 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 240-290 chr3 105710577 105710692 + 3 NA intron (NR_135808, intron 10 of 19) intron (NR_135808, intron 10 of 19) 156957 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 680-63 chr2 119905136 119905429 + 3 NA intron (NM_002830, intron 10 of 26) L1M2|LINE|L1 -107795 NM_001184938 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 391-364 chr8 118424136 118424315 + 3 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -196776 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 570-165 chr5 147801721 147801994 + 3 NA Intergenic Intergenic -19129 NM_001270941 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 1171-9 chr2 98285918 98286574 + 3 NA intron (NM_001345864, intron 16 of 21) L1MB7|LINE|L1 -59909 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 438-288 chr8 139559902 139560148 + 3 NA Intergenic Intergenic 143098 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 772-23 chr16 20231868 20232253 + 3 NA Intergenic Intergenic 95453 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 382-227 chr2 217288913 217289204 + 3 NA intron (NR_026597, intron 12 of 12) intron (NR_026597, intron 12 of 12) 6325 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 407-291 chr7 39321647 39321876 + 3 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 7373 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 466-25 chr10 22227905 22228211 + 3 NA Intergenic Intergenic -18075 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 585-10 chr1 240939933 240940257 + 3 NA intron (NM_001350116, intron 4 of 16) MER34D|LTR|ERV1 -192177 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 432-38 chr10 105528953 105529100 + 3 NA Intergenic L1ME3E|LINE|L1 291307 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 634-124 chr5 54767044 54767329 + 3 NA Intergenic LTR16A|LTR|ERVL -22928 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 580-7 chr1 162745245 162745502 + 3 NA intron (NM_006182, intron 3 of 17) L1MB1|LINE|L1 -45329 NM_016371 51478 Hs.492925 NM_016371 ENSG00000132196 HSD17B7 PRAP|SDR37C1 hydroxysteroid 17-beta dehydrogenase 7 protein-coding 792-60 chr8 79186209 79186750 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -145709 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 529-3 chr1 160597289 160597591 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -17924 NM_001184882 8832 Hs.398093 NM_003874 ENSG00000066294 CD84 LY9B|SLAMF5|hCD84|mCD84 CD84 molecule protein-coding 403-219 chr4 55931082 55931367 + 3 NA Intergenic Intergenic -17721 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 866-45 chr7 26570327 26570921 + 3 NA Intergenic L1ME3D|LINE|L1 -31799 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 587-108 chr3 98960026 98960338 + 3 NA Intergenic Intergenic -58487 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 843-12 chr11 106230106 106230670 + 3 NA Intergenic LTR10B2|LTR|ERV1 -19631 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 749-79 chr5 107050987 107051411 + 3 NA Intergenic L1ME2|LINE|L1 -40185 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 748-57 chr22 33866241 33866545 + 3 NA intron (NM_001362949, intron 1 of 15) MER3|DNA|hAT-Charlie 54035 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 427-213 chr5 121587514 121587753 + 3 NA Intergenic L1M3|LINE|L1 -264249 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 475-5 chr1 102500111 102500414 + 3 NA Intergenic MIR|SINE|MIR -503028 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 956 chr1 65806310 65806776 + 3 NA intron (NM_002600, intron 1 of 16) Kanga1b|DNA|TcMar-Tc2 13648 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 496-274 chr8 10953919 10954175 + 3 NA intron (NM_173683, intron 1 of 2) L1MB7|LINE|L1 81255 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 572-56 chr14 86320490 86320749 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 385941 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 482-152 chr21 29733170 29733381 + 3 NA intron (NM_000830, intron 1 of 16) MER63D|DNA|hAT-Blackjack -14900 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 440-116 chr2 52645808 52646046 + 3 NA Intergenic MIR|SINE|MIR 56688 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 570-119 chr2 191652465 191652800 + 3 NA Intergenic HAL1|LINE|L1 -25440 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 735-54 chr3 3355574 3356074 + 3 NA Intergenic Intergenic -176107 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 590-89 chr20 16489962 16490298 + 3 NA intron (NM_001199866, intron 12 of 22) MLT1B|LTR|ERVL-MaLR 83318 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 527-114 chr18 75142270 75142523 + 3 NA Intergenic Intergenic 63117 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 564-160 chr5 129492744 129493122 + 3 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -32244 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 252-355 chr6 18468451 18468560 + 3 NA 3' UTR (NM_182757, exon 8 of 8) 3' UTR (NM_182757, exon 8 of 8) -54242 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 266-226 chr22 22842503 22842624 + 3 NA Intergenic L1M4|LINE|L1 19787 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 321-607 chr9 111246251 111246455 + 3 NA Intergenic L1MC4|LINE|L1 24861 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 244-205 chr21 22913092 22913266 + 3 NA Intergenic Intergenic -166105 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 1056-9 chr3 62735846 62736545 + 3 NA intron (NM_003716, intron 3 of 29) MIRc|SINE|MIR 139221 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 427-12 chr1 164098933 164099095 + 3 NA Intergenic L1MA9|LINE|L1 -460346 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 711-38 chr20 17690034 17690412 + 3 NA Intergenic Intergenic -3452 NM_001159495 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 347-27 chr1 189265233 189265450 + 3 NA Intergenic Intergenic 1210669 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 469-6 chr1 50008157 50008407 + 3 NA intron (NM_001323575, intron 1 of 12) L1MA1|LINE|L1 15672 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 1034 chr1 14843324 14843854 + 3 NA intron (NM_201628, intron 1 of 14) L2b|LINE|L2 -80540 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 640-140 chr8 133383437 133383777 + 3 NA Intergenic Intergenic -86303 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 591-155 chr7 40487447 40487814 + 3 NA intron (NM_024728, intron 11 of 14) L1MA10|LINE|L1 352654 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 461-82 chr14 87827410 87827615 + 3 NA Intergenic L1MD1|LINE|L1 165670 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 382-28 chr10 2176757 2176972 + 3 NA Intergenic Intergenic -100775 NR_106720 102465944 NR_106720 ENSG00000278069 MIR6072 hsa-mir-6072 microRNA 6072 ncRNA 446-278 chr7 64912476 64912765 + 3 NA intron (NM_021148, intron 1 of 3) intron (NM_021148, intron 1 of 3) 9378 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 662-37 chr18 6685927 6686277 + 3 NA Intergenic L2|LINE|L2 -43614 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 575-210 chr9 28036788 28037152 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -463104 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 780-16 chr12 88447693 88448180 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 132535 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 532-74 chr15 39697390 39697637 + 3 NA intron (NM_152597, intron 10 of 11) intron (NM_152597, intron 10 of 11) 85328 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 283-440 chr8 90343750 90343904 + 3 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 122339 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 976-16 chr3 124525353 124525726 + 3 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -59119 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 574-9 chr1 219370752 219371033 + 3 NA Intergenic Intergenic 186432 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 366-7 chr1 67986086 67986230 + 3 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 65473 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 1303-4 chr3 36680866 36681480 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 58688 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 584-144 chr5 150941551 150941758 + 3 NA intron (NR_026867, intron 4 of 4) intron (NR_026867, intron 4 of 4) 4930 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 593-37 chr12 120388115 120388394 + 3 NA Intergenic L1MB5|LINE|L1 -19090 NM_002442 4440 Hs.158311 NM_002442 ENSG00000135097 MSI1 - musashi RNA binding protein 1 protein-coding 986-9 chr11 11055674 11056253 + 3 NA Intergenic L3|LINE|CR1 197746 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 427-48 chr12 46643179 46643415 + 3 NA intron (NR_125377, intron 3 of 3) L1PA14|LINE|L1 182700 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 295-218 chr2 81779260 81779390 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -312379 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 670-43 chr16 51290727 51291176 + 3 NA intron (NR_039672, intron 6 of 6) L1MA5|LINE|L1 -139679 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 436-334 chr9 137791000 137791328 + 3 NA intron (NM_001354263, intron 16 of 26) intron (NM_001354263, intron 16 of 26) -2758 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 326-507 chr7 99646024 99646166 + 3 NA intron (NM_001350985, intron 5 of 5) L1M1|LINE|L1 29149 NM_145115 221785 Hs.446297 NM_145115 ENSG00000197037 ZSCAN25 ZNF498 zinc finger and SCAN domain containing 25 protein-coding 228-269 chr5 59739610 59739730 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 29178 NM_001364603 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 384-218 chr3 35825622 35825853 + 3 NA Intergenic L1MCb|LINE|L1 81261 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 405-150 chr2 115371401 115371590 + 3 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 27680 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 521-239 chr7 78862872 78863096 + 3 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -146004 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 490-112 chr17 78306250 78306534 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -27900 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 450-60 chr12 2442456 2442635 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 172769 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 472-111 chr16 62746692 62746993 + 3 NA Intergenic L2b|LINE|L2 -710404 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 483-173 chr3 111037276 111037604 + 3 NA Intergenic L1MA4A|LINE|L1 32519 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 454-83 chr13 52989259 52989428 + 3 NA Intergenic L1M5|LINE|L1 -39470 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 709-89 chr8 80956769 80957149 + 3 NA Intergenic Intergenic -82178 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 340-548 chr8 117677753 117677880 + 3 NA Intergenic L2a|LINE|L2 157103 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 436-220 chr4 122662272 122662472 + 3 NA intron (NR_104126, intron 10 of 10) intron (NR_104126, intron 10 of 10) -41306 NM_021803 59067 Hs.567559 NM_021803 ENSG00000138684 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 775-51 chr20 39222507 39223084 + 3 NA intron (NR_027124, intron 1 of 3) MIRc|SINE|MIR 1953 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 590-155 chr7 52846898 52847226 + 3 NA Intergenic MER66C|LTR|ERV1 -188571 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 559-71 chr17 50745682 50746021 + 3 NA exon (NM_016424, exon 8 of 10) exon (NM_016424, exon 8 of 10) 21667 NM_001358683 55018 Hs.389460 NM_017928 ENSG00000167117 ANKRD40CL C17orf73|LINC00483 ANKRD40 C-terminal like protein-coding 688-52 chr16 13527478 13527881 + 3 NA Intergenic MLT1O|LTR|ERVL-MaLR -392478 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 569-144 chr5 45500059 45500281 + 3 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 196210 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 650-82 chr4 32955616 32955884 + 3 NA Intergenic LTR73|LTR|ERV1 604712 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 969-5 chr10 121619122 121619773 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -20989 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 446-88 chr13 21637218 21637450 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -33164 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 640-143 chr9 24499940 24500255 + 3 NA Intergenic HAL1|LINE|L1 45579 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 597-6 chr1 67998759 67999063 + 3 NA intron (NR_040077, intron 1 of 9) L1ME1|LINE|L1 52720 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 470-132 chr2 89846455 89846732 + 3 NA Intergenic Intergenic -208686 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 548-58 chr12 118678311 118678506 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 83271 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 320-451 chr5 101265010 101265143 + 3 NA Intergenic Intergenic -361794 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 462-256 chr7 8786657 8786894 + 3 NA Intergenic L2|LINE|L2 353166 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 952-14 chr19 36638625 36639170 + 3 NA exon (NM_001322826, exon 5 of 5) exon (NM_001322826, exon 5 of 5) 27940 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 516-49 chr12 45141097 45141323 + 3 NA Intergenic L1M5|LINE|L1 74796 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 462-220 chr5 7648806 7649035 + 3 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 202213 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 506-291 chr8 125804900 125805227 + 3 NA Intergenic MER50|LTR|ERV1 146134 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 281-371 chr5 121953682 121953795 + 3 NA Intergenic L1ME1|LINE|L1 -8237 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 598-84 chr22 47868999 47869255 + 3 NA Intergenic L1MB7|LINE|L1 237453 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 689-66 chr4 31190816 31191150 + 3 NA intron (NR_125935, intron 2 of 4) MamSINE1|SINE|tRNA-RTE 19839 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 513-147 chr2 147732801 147733105 + 3 NA Intergenic L1PA2|LINE|L1 -111564 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 273-171 chr17 60041563 60041665 + 3 NA Intergenic Intergenic 1491 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 513-290 chr8 137662430 137662686 + 3 NA Intergenic Intergenic -248970 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 845-39 chr8 106016336 106016780 + 3 NA intron (NR_125797, intron 1 of 4) L1MEc|LINE|L1 43945 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 716-86 chr8 102639525 102639896 + 3 NA Intergenic Intergenic 14254 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 359-350 chr4 30413106 30413316 + 3 NA Intergenic L1MB5|LINE|L1 -307158 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 503-43 chr10 108095220 108095525 + 3 NA Intergenic MIR|SINE|MIR -26079 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 597-60 chr17 64288349 64288651 + 3 NA Intergenic AluSz6|SINE|Alu -25240 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 1036-10 chr17 69089549 69090104 + 3 NA intron (NM_080284, intron 26 of 38) intron (NM_080284, intron 26 of 38) -9716 NR_049834 100847008 NR_049834 ENSG00000265331 MIR4524B - microRNA 4524b ncRNA 558-5 chr1 71400678 71400909 + 3 NA 3' UTR (NM_173808, exon 7 of 7) 3' UTR (NM_173808, exon 7 of 7) 319469 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 620-12 chr10 34078057 34078327 + 3 NA Intergenic Intergenic -305512 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 487-241 chr5 158578305 158578543 + 3 NA Intergenic L1PB1|LINE|L1 -168651 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 682-83 chr5 120861039 120861354 + 3 NA Intergenic LTR105_Mam|LTR|ERVL 329732 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 587-62 chr17 71582034 71582375 + 3 NA Intergenic L1ME3A|LINE|L1 -380025 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 289-417 chr6 78595946 78596136 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -56732 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 710-21 chr11 78014047 78014380 + 3 NA Intergenic AluJo|SINE|Alu 9063 NM_023930 65987 Hs.709780 NM_023930 ENSG00000151364 KCTD14 - potassium channel tetramerization domain containing 14 protein-coding 569-98 chr2 114491073 114491419 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 29669 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 343-434 chr5 83575254 83575460 + 3 NA intron (NM_001164098, intron 12 of 13) intron (NM_001164098, intron 12 of 13) -13043 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 246-222 chr2 223624049 223624225 + 3 NA Intergenic L1M5|LINE|L1 -21776 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 849-3 chr10 75312279 75312851 + 3 NA intron (NR_038226, intron 2 of 3) L1MDa|LINE|L1 16182 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 513-160 chr20 31163598 31163952 + 3 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -93889 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 277-225 chr20 16116770 16116981 + 3 NA Intergenic L1PA13|LINE|L1 -130993 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 622-24 chr12 104016873 104017218 + 3 NA intron (NM_031302, intron 4 of 11) MER113|DNA|hAT-Charlie 47132 NM_031302 83468 Hs.631650 NM_031302 ENSG00000120820 GLT8D2 - glycosyltransferase 8 domain containing 2 protein-coding 407-357 chrX 91424445 91424603 + 3 NA intron (NR_110659, intron 1 of 3) L1MCa|LINE|L1 -10315 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 715-7 chr11 43016142 43016510 + 3 NA Intergenic Intergenic 253043 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 540-36 chr11 44502060 44502312 + 3 NA Intergenic MIR3|SINE|MIR -63477 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 451-214 chr7 45169078 45169453 + 3 NA intron (NM_005856, intron 1 of 2) L1MB7|LINE|L1 11474 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 664-20 chr10 78307949 78308285 + 3 NA Intergenic L1M5|LINE|L1 40775 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 636-28 chr12 38764833 38765121 + 3 NA intron (NM_153634, intron 8 of 19) intron (NM_153634, intron 8 of 19) 140614 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 491-253 chr8 61890900 61891082 + 3 NA intron (NR_149085, intron 1 of 3) intron (NR_149085, intron 1 of 3) 1152 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 493-42 chr11 31116127 31116454 + 3 NA intron (NM_001367979, intron 11 of 38) intron (NM_001367979, intron 11 of 38) -123604 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 305-81 chr10 112075852 112076083 + 3 NA Intergenic Intergenic 107798 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 359-323 chr3 80289990 80290178 + 3 NA Intergenic L1M5|LINE|L1 -474813 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 564-70 chr16 76896225 76896492 + 3 NA Intergenic L1M4b|LINE|L1 27422 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 505-6 chr1 78242907 78243090 + 3 NA intron (NR_027310, intron 1 of 5) L2a|LINE|L2 13399 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 401-202 chr3 45500977 45501145 + 3 NA intron (NM_001368263, intron 14 of 20) intron (NM_001368263, intron 14 of 20) 8484 NR_048543 100885795 Hs.641094 NR_048543 LARS2-AS1 - LARS2 antisense RNA 1 ncRNA 514-254 chr6 140186267 140186460 + 3 NA Intergenic L1PA16|LINE|L1 -18889 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 407-130 chr19 56578432 56578640 + 3 NA exon (NM_001001668, exon 6 of 6) exon (NM_001001668, exon 6 of 6) 11068 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 475-266 chr7 62614407 62614575 + 3 NA Intergenic ALR/Alpha|Satellite|centr 689565 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 626-112 chr5 33269424 33269811 + 3 NA Intergenic L2a|LINE|L2 39882 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 422-267 chr6 113125337 113125515 + 3 NA Intergenic Intergenic 308021 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 397-192 chr21 19109668 19109867 + 3 NA Intergenic HERV16-int|LTR|ERVL -349955 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 683-88 chr8 80934729 80934991 + 3 NA Intergenic L1MA6|LINE|L1 -60079 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 289-349 chr4 155271671 155271833 + 3 NA Intergenic L1MEc|LINE|L1 63116 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 538-121 chr2 125724073 125724293 + 3 NA Intergenic Intergenic 393802 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 474-29 chr10 39157544 39157879 + 3 NA Intergenic ALR/Alpha|Satellite|centr 461115 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 488-228 chr5 179400660 179400843 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -55290 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 497-59 chr12 87568053 87568341 + 3 NA Intergenic LTR8B|LTR|ERV1 -200615 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 524-285 chrX 10116319 10116621 + 3 NA exon (NM_015691, exon 10 of 23) exon (NM_015691, exon 10 of 23) -40475 NM_001256944 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 566-60 chr16 55272552 55272840 + 3 NA Intergenic Intergenic -51863 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 771-50 chr20 47570894 47571353 + 3 NA intron (NM_181659, intron 1 of 22) AluSx|SINE|Alu 69236 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 529-181 chr5 115483363 115483545 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 61321 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 377-89 chr12 39683488 39683718 + 3 NA intron (NM_001031748, intron 9 of 12) MamRep605|LTR?|LTR? 57420 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 518-106 chr17 33528955 33529132 + 3 NA TTS (NR_037584) TTS (NR_037584) 4717 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 718-59 chr4 31451966 31452332 + 3 NA Intergenic L1MB7|LINE|L1 -54395 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 443-172 chr20 194038 194277 + 3 NA Intergenic HERV17-int|LTR|ERV1 -4446 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 399-300 chr8 25616869 25617067 + 3 NA Intergenic L1M4c|LINE|L1 157735 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 315-482 chr8 91353120 91353324 + 3 NA intron (NM_134266, intron 11 of 18) intron (NM_134266, intron 11 of 18) 103903 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 801 chr1 91306952 91307427 + 3 NA intron (NM_001017975, intron 30 of 38) L1MB7|LINE|L1 97648 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 880-51 chr8 137510564 137511092 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -97240 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 687-92 chr5 66545888 66546266 + 3 NA Intergenic L1ME1|LINE|L1 -34473 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 533-142 chr3 147955261 147955596 + 3 NA Intergenic Intergenic -122731 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 537-142 chr20 46468867 46469064 + 3 NA Intergenic Intergenic -3673 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 520-96 chr14 83867504 83867681 + 3 NA Intergenic Intergenic 1224960 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 388-244 chr4 11048782 11048952 + 3 NA Intergenic L1MA10|LINE|L1 -319960 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 276-476 chr9 27966152 27966313 + 3 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -392366 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 830-16 chr15 88149124 88149569 + 3 NA intron (NM_001007156, intron 5 of 15) intron (NM_001007156, intron 5 of 15) 56628 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 369-455 chrX 80366270 80366430 + 3 NA intron (NM_001170574, intron 3 of 4) intron (NM_001170574, intron 3 of 4) 30846 NM_001170574 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 372-301 chr22 33848793 33849060 + 3 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 71502 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 597-116 chr6 61863481 61863778 + 3 NA intron (NM_001350622, intron 6 of 9) L1PA12|LINE|L1 289499 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 551-54 chr14 78372775 78372972 + 3 NA intron (NR_073547, intron 4 of 20) (AATAA)n|Simple_repeat|Simple_repeat -30846 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 218-83 chr13 68738317 68738456 + 3 NA Intergenic Intergenic 146939 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 558-215 chr8 86999327 86999592 + 3 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 133044 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 283-117 chr13 27517606 27517751 + 3 NA Intergenic L1MB7|LINE|L1 -67076 NM_001166263 219402 Hs.534582 NM_152912 ENSG00000122033 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 569-6 chr1 106065144 106065408 + 3 NA Intergenic Intergenic -37023 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 389-166 chr2 51706826 51706982 + 3 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -663744 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 510-55 chr12 2176772 2177067 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 46562 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 396-145 chr19 37871973 37872218 + 3 NA Intergenic LTR9A1|LTR|ERV1 -16899 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 495-182 chr4 95763190 95763364 + 3 NA Intergenic L1MA3|LINE|L1 -76816 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 377-278 chr3 197265023 197265214 + 3 NA intron (NM_001366216, intron 4 of 23) Kanga2_a|DNA|TcMar-Tc2 28830 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 636-26 chr12 13618416 13618880 + 3 NA intron (NM_000834, intron 4 of 12) L2|LINE|L2 -241903 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 413-53 chr11 40862443 40862691 + 3 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -569437 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 565-47 chr15 61750646 61751015 + 3 NA Intergenic Intergenic 20912 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 856-20 chr19 33988905 33989321 + 3 NA Intergenic Intergenic -183391 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 869-12 chr11 32194293 32194783 + 3 NA Intergenic Intergenic -50626 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 463-144 chr2 107713429 107713684 + 3 NA Intergenic Intergenic -40556 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 218-296 chr7 1440471 1440549 + 3 NA intron (NM_182924, intron 8 of 16) OldhAT1|DNA|hAT-Ac 18960 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 435-101 chr17 12620552 12620737 + 3 NA intron (NR_034145, intron 3 of 3) L1MC1|LINE|L1 -45246 NM_153604 93649 Hs.462257 NM_153604 ENSG00000141052 MYOCD MYCD myocardin protein-coding 880-13 chr16 71206046 71206524 + 3 NA intron (NM_001198543, intron 1 of 18) L1PREC2|LINE|L1 24437 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 189-56 chr14 63758426 63758546 + 3 NA Intergenic AluYh7|SINE|Alu -30421 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 401-127 chr17 54830616 54830792 + 3 NA Intergenic L1ME3B|LINE|L1 -69987 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 938-6 chr13 65446192 65446639 + 3 NA Intergenic L1M3b|LINE|L1 -419632 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 805-46 chr8 78032772 78033295 + 3 NA Intergenic Intergenic -483307 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 481-237 chr5 6398940 6399126 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -20486 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 352-187 chr17 79821148 79821391 + 3 NA Intergenic Intergenic -2183 NR_146504 105371919 NR_146504 ENSG00000262772 LINC01977 - long intergenic non-protein coding RNA 1977 ncRNA 583-21 chr10 95535409 95535622 + 3 NA intron (NM_001290295, intron 1 of 24) L1MC|LINE|L1 25856 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 474-241 chr5 112429730 112429955 + 3 NA Intergenic Intergenic 10259 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 441-200 chr5 38724457 38724739 + 3 NA intron (NR_109951, intron 3 of 3) intron (NR_109951, intron 3 of 3) -4325 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 401-135 chr18 4786821 4786990 + 3 NA Intergenic Intergenic -294277 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 547-154 chr4 31477755 31478153 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -28590 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 459-64 chr12 37984481 37984764 + 3 NA Intergenic ALR/Alpha|Satellite|centr -332152 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 415-72 chr14 72159002 72159164 + 3 NA intron (NM_001370288, intron 2 of 16) MIR|SINE|MIR 225556 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 377-380 chr7 95047711 95047901 + 3 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 137908 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 282-25 chr1 216494992 216495111 + 3 NA Intergenic L1ME3A|LINE|L1 -71603 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 532-62 chr13 78420974 78421170 + 3 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -175050 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 336-382 chr3 174984946 174985185 + 3 NA intron (NM_207015, intron 1 of 13) Charlie13a|DNA|hAT-Charlie 125731 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 525-33 chr10 88125620 88125796 + 3 NA Intergenic Intergenic 262083 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 655-99 chr5 120175795 120176061 + 3 NA Intergenic L1MA1|LINE|L1 -288350 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 422-123 chr18 10592125 10592302 + 3 NA Intergenic Intergenic 34207 NR_146509 102724470 NR_146509 LINC01887 - long intergenic non-protein coding RNA 1887 ncRNA 543-109 chr19 36873323 36873657 + 3 NA intron (NM_001242476, intron 3 of 3) L1MA9|LINE|L1 21839 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 551-147 chr5 13686947 13687337 + 3 NA Intergenic L1MA7|LINE|L1 257338 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 546-98 chr2 3902202 3902499 + 3 NA Intergenic Intergenic 71682 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 306-156 chr14 84210053 84210261 + 3 NA Intergenic Intergenic -1061775 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 463-200 chr3 189514881 189515136 + 3 NA Intergenic Intergenic -81738 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 1055-2 chr11 14337593 14338189 + 3 NA intron (NM_001177314, intron 1 of 5) L1MDa|LINE|L1 20594 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 377-412 chr8 126275060 126275242 + 3 NA Intergenic Intergenic -50344 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 427-248 chr7 88849630 88849848 + 3 NA intron (NM_181646, intron 1 of 3) A-rich|Low_complexity|Low_complexity -54002 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 540-68 chr14 65901654 65901924 + 3 NA Intergenic MER51A|LTR|ERV1 430687 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 522-160 chr21 19987272 19987581 + 3 NA Intergenic Intergenic -87671 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 475-68 chr13 43656736 43656957 + 3 NA intron (NM_001347964, intron 2 of 17) intron (NM_001347964, intron 2 of 17) -27369 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 459-177 chr3 21246253 21246435 + 3 NA Intergenic L1MCa|LINE|L1 -159382 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 272-484 chr9 137341298 137341436 + 3 NA intron (NM_017820, intron 17 of 21) MER68|LTR|ERVL -39096 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 573-96 chr2 105940895 105941265 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 89233 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 685-51 chr2 151119106 151119453 + 3 NA Intergenic Intergenic 142584 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 749-29 chr14 29677675 29678064 + 3 NA intron (NM_001330069, intron 2 of 18) L1M5|LINE|L1 249227 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 286-10 chr1 57034966 57035143 + 3 NA intron (NM_001353986, intron 9 of 14) intron (NM_001353986, intron 9 of 14) -68914 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 797-45 chr6 62114193 62114685 + 3 NA intron (NR_146874, intron 2 of 13) MIRb|SINE|MIR 171786 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 356-505 chr9 80546889 80547058 + 3 NA Intergenic L1MA5|LINE|L1 571950 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 301-459 chr8 110532356 110532549 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 494981 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 426-269 chr7 36860973 36861249 + 3 NA intron (NM_001206480, intron 21 of 21) intron (NM_001206480, intron 21 of 21) 58321 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 477-95 chr14 73810786 73811047 + 3 NA Intergenic L2c|LINE|L2 19219 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 527-106 chr16 80738900 80739097 + 3 NA intron (NM_152342, intron 1 of 6) L1MB3|LINE|L1 65600 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 1923 chr2 200149919 200150890 + 3 NA Intergenic HAL1|LINE|L1 -155475 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 855-16 chr14 70896188 70896753 + 3 NA Intergenic L1PA16|LINE|L1 -10989 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 1298 chr10 41743624 41744349 + 3 NA Intergenic ALR/Alpha|Satellite|centr 624059 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 720-7 chr10 8208216 8208607 + 3 NA Intergenic Intergenic 59894 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 549-107 chr2 74172497 74172827 + 3 NA exon (NM_001317110, exon 2 of 6) exon (NM_001317110, exon 2 of 6) 5652 NM_001317111 55233 Hs.602092 NM_018221 ENSG00000114978 MOB1A C2orf6|MATS1|MOB1|MOBK1B|MOBKL1B|Mob4B MOB kinase activator 1A protein-coding 1062-18 chr5 164891869 164892501 + 3 NA Intergenic Intergenic 421906 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 891-21 chr20 20943382 20943914 + 3 NA Intergenic MIR|SINE|MIR 162710 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 428-190 chr3 121013311 121013509 + 3 NA intron (NR_145517, intron 3 of 8) L1PA17|LINE|L1 -36230 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 472-121 chr17 41441825 41442034 + 3 NA promoter-TSS (NM_006771) promoter-TSS (NM_006771) -585 NM_006771 8687 Hs.248188 NM_006771 ENSG00000171360 KRT38 HA8|KRTHA8|hHa8 keratin 38 protein-coding 259-371 chr7 56197112 56197217 + 3 NA Intergenic Intergenic -80747 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 453-100 chr18 72297869 72298107 + 3 NA Intergenic L2b|LINE|L2 246354 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 504-235 chr7 3099004 3099175 + 3 NA Intergenic MER1A|DNA|hAT-Charlie -55222 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 760-64 chr6 20318082 20318383 + 3 NA Intergenic Kanga1c|DNA|TcMar-Tc2 -83647 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 383-174 chr2 4319122 4319297 + 3 NA Intergenic Intergenic 337013 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 425-210 chr4 100459313 100459489 + 3 NA intron (NM_016242, intron 4 of 11) L1MA8|LINE|L1 58621 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 1255-9 chr3 118038883 118039492 + 3 NA Intergenic Intergenic -348262 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 294-423 chr6 150328628 150328736 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -40330 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 526-121 chr2 57130461 57130817 + 3 NA Intergenic L1MC1|LINE|L1 -777012 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 223-82 chr14 35972020 35972174 + 3 NA Intergenic Intergenic -98330 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 173-85 chr21 44543535 44543612 + 3 NA intron (NM_144991, intron 2 of 11) MLT1C|LTR|ERVL-MaLR -3378 NM_198691 386677 Hs.688631 NM_198691 ENSG00000215455 KRTAP10-1 KAP10.1|KAP18-1|KAP18.1|KRTAP10.1|KRTAP18-1|KRTAP18.1 keratin associated protein 10-1 protein-coding 566-87 chr2 56450353 56450635 + 3 NA Intergenic Intergenic -264724 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 470-36 chr11 77806791 77807035 + 3 NA intron (NM_016578, intron 1 of 15) intron (NM_016578, intron 1 of 15) 13921 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 607-39 chr14 57348222 57348573 + 3 NA Intergenic Intergenic -42189 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 1080-14 chr2 74736457 74737113 + 3 NA Intergenic HAL1|LINE|L1 82538 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 284-121 chr14 72132590 72132710 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 199123 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 640-11 chr10 41898650 41899065 + 3 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 469188 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 382-280 chr3 162972732 162972902 + 3 NA Intergenic Intergenic 330484 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 417-262 chr7 52376500 52376656 + 3 NA Intergenic Intergenic -659055 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 497-198 chr4 40774842 40775029 + 3 NA exon (NM_001330648, exon 6 of 11) exon (NM_001330648, exon 6 of 11) 24980 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 638-114 chr5 22236933 22237296 + 3 NA intron (NM_001364104, intron 2 of 13) Tigger3b|DNA|TcMar-Tigger -23264 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 568-133 chr3 45905779 45906039 + 3 NA intron (NM_001276379, intron 2 of 9) intron (NM_001276379, intron 2 of 9) 9815 NM_001276378 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 940-21 chr3 84202968 84203387 + 3 NA Intergenic L1PREC2|LINE|L1 666398 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 811-27 chr2 115392630 115393164 + 3 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 49082 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 492-286 chr9 137863521 137863726 + 3 NA Intergenic Intergenic -14159 NM_000718 774 Hs.495522 NM_000718 ENSG00000148408 CACNA1B BIII|CACNL1A5|CACNN|Cav2.2|DYT23 calcium voltage-gated channel subunit alpha1 B protein-coding 627 chr1 44363714 44363972 + 3 NA Intergenic L2c|LINE|L2 -8564 NM_001301700 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 512-283 chr8 130671005 130671238 + 3 NA Intergenic Intergenic -227447 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 526-70 chr13 86746907 86747098 + 3 NA Intergenic LTR16D|LTR|ERVL -164918 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 430-242 chr5 46219015 46219180 + 3 NA Intergenic ALR/Alpha|Satellite|centr -522717 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 569-159 chr6 159297188 159297406 + 3 NA Intergenic Intergenic -86234 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 301-145 chr16 31163028 31163165 + 3 NA Intergenic AluSp|SINE|Alu -13030 NM_173502 146547 Hs.256632 NM_173502 ENSG00000178226 PRSS36 - serine protease 36 protein-coding 449-20 chr1 219500845 219501096 + 3 NA intron (NR_135822, intron 1 of 3) L1ME2|LINE|L1 56354 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 645-11 chr10 105805885 105806222 + 3 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 14280 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 579-180 chr9 26283893 26284226 + 3 NA Intergenic Intergenic 217384 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 514-300 chr9 105223533 105223708 + 3 NA Intergenic MER41B|LTR|ERV1 -20985 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 457-97 chr18 4935001 4935169 + 3 NA Intergenic L1MEc|LINE|L1 -146097 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 601-102 chr4 32023516 32023837 + 3 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -1254 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 789-53 chr9 24204994 24205552 + 3 NA Intergenic L1MCa|LINE|L1 340403 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 494-5 chr1 55676506 55676689 + 3 NA Intergenic L1PA16|LINE|L1 268366 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 557-84 chr2 13177071 13177400 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -170222 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 877-38 chrX 6522842 6523335 + 3 NA Intergenic MADE1|DNA|TcMar-Mariner 12030 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 618-93 chr4 109466063 109466399 + 3 NA intron (NM_001300813, intron 3 of 24) MER119|DNA|hAT-Charlie -22467 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 970-8 chr14 61577201 61577706 + 3 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -6800 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 595-97 chr2 215157715 215158012 + 3 NA Intergenic Intergenic -19237 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 287-192 chr2 57525205 57525433 + 3 NA Intergenic L1PB4|LINE|L1 -382332 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 380-140 chr15 87217743 87217904 + 3 NA Intergenic Intergenic -229397 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 442-278 chr7 118626147 118626358 + 3 NA Intergenic Intergenic 401548 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 914-9 chr14 78703335 78703775 + 3 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 299836 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 429-145 chr2 47990998 47991198 + 3 NA Intergenic Intergenic -85305 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 232-286 chr5 4604933 4605089 + 3 NA Intergenic Intergenic -168470 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 557-17 chr10 26446384 26446659 + 3 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 8180 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 405-28 chr10 43244720 43244914 + 3 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -15078 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 670-46 chr17 64437156 64437433 + 3 NA Intergenic MER41B|LTR|ERV1 -11821 NM_001291317 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 507-43 chr11 2070158 2070442 + 3 NA Intergenic (TTCTCCA)n|Simple_repeat|Simple_repeat 63909 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 541-99 chr18 79769003 79769333 + 3 NA Intergenic Intergenic 87738 NM_001202504 9150 Hs.465490 NM_004715 ENSG00000060069 CTDP1 CCFDN|FCP1 CTD phosphatase subunit 1 protein-coding 944-3 chr1 99575394 99575951 + 3 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -70441 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 630-127 chr7 47003417 47003857 + 3 NA Intergenic Intergenic -306515 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 852-29 chr2 240264982 240265529 + 3 NA Intergenic L1ME2|LINE|L1 -124597 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 601-142 chr7 138052846 138053156 + 3 NA Intergenic Intergenic -23458 NM_001190906 6718 Hs.201667 NM_005989 ENSG00000122787 AKR1D1 3o5bred|CBAS2|SRD5B1 aldo-keto reductase family 1 member D1 protein-coding 629-54 chr19 24389881 24390285 + 3 NA Intergenic ALR/Alpha|Satellite|centr -226636 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 399-214 chr3 124507426 124507601 + 3 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -77145 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 220-375 chr8 118901000 118901145 + 3 NA Intergenic Intergenic 50813 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 671-108 chr9 30446480 30446885 + 3 NA Intergenic AluJo|SINE|Alu -38228 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 508-152 chr3 111262014 111262293 + 3 NA Intergenic L1MB2|LINE|L1 190337 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 399-286 chr7 80557645 80557857 + 3 NA Intergenic L1ME3Cz|LINE|L1 -44456 NM_001001547 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 490-5 chr1 55541209 55541398 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger 315662 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 558-33 chr11 50529342 50529626 + 3 NA Intergenic ALR/Alpha|Satellite|centr 120337 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 696-46 chr16 48647432 48647854 + 3 NA Intergenic L1MA5A|LINE|L1 -37463 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 621-92 chr5 31099210 31099568 + 3 NA Intergenic Intergenic -94297 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 542-87 chr19 44449338 44449777 + 3 NA promoter-TSS (NM_001278510) promoter-TSS (NM_001278510) -979 NM_001278510 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 1016 chr1 227678089 227678637 + 3 NA non-coding (NR_102302, exon 6 of 6) non-coding (NR_102302, exon 6 of 6) 19344 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 796-55 chr7 71448596 71449091 + 3 NA intron (NM_022479, intron 5 of 10) L1MA10|LINE|L1 -141073 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 344-51 chr10 47269014 47269211 + 3 NA Intergenic Intergenic -31085 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 346-401 chr5 122472199 122472388 + 3 NA intron (NR_051996, intron 2 of 5) intron (NR_051996, intron 2 of 5) 6794 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 466-147 chr2 160588623 160588906 + 3 NA Intergenic L1MA4|LINE|L1 -94957 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 398-214 chr3 109446528 109446715 + 3 NA intron (NR_109841, intron 2 of 4) L1M1|LINE|L1 36631 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 483-249 chr7 62565457 62565689 + 3 NA Intergenic ALR/Alpha|Satellite|centr 738483 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 497-216 chr5 12348114 12348385 + 3 NA Intergenic Intergenic -226608 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 327-35 chr10 2249915 2250065 + 3 NA Intergenic L1MC1|LINE|L1 65084 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 440-254 chr8 130834629 130834853 + 3 NA intron (NM_001115, intron 12 of 17) L1ME3Cz|LINE|L1 206168 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 957-26 chr5 32775740 32776224 + 3 NA intron (NM_001364460, intron 3 of 6) L1ME4b|LINE|L1 64661 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 456-249 chr5 53694612 53694860 + 3 NA Intergenic L1MA9|LINE|L1 124946 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 791-40 chr2 168238378 168238869 + 3 NA intron (NM_013233, intron 1 of 17) intron (NM_013233, intron 1 of 17) 8972 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 572-109 chr3 95981419 95981844 + 3 NA Intergenic L1MA4|LINE|L1 -298438 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 587-129 chr5 5098152 5098496 + 3 NA Intergenic Intergenic -20013 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 564-99 chr2 56470145 56470460 + 3 NA Intergenic Intergenic -284532 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1078-6 chr2 136430432 136430911 + 3 NA Intergenic L1MC1|LINE|L1 -312516 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 509-184 chr5 32638615 32638940 + 3 NA Intergenic AluJo|SINE|Alu -52095 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 751-4 chr10 36025443 36025742 + 3 NA Intergenic Intergenic 247290 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 504-243 chr7 89389501 89389698 + 3 NA Intergenic L1M5|LINE|L1 -593862 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 820-26 chr2 16799397 16799826 + 3 NA Intergenic Intergenic -133777 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 571-39 chr12 89820693 89820977 + 3 NA Intergenic L1MC5a|LINE|L1 -111469 NM_001366530 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 473-304 chrUn_KI270519v1 135853 136052 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 358-50 chr10 76605317 76605518 + 3 NA Intergenic L1M4|LINE|L1 -282627 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 445-122 chr2 79594522 79594757 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 54720 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 450-288 chr7 110566591 110566924 + 3 NA Intergenic L2a|LINE|L2 -524249 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 874-33 chr8 106795186 106795833 + 3 NA Intergenic Intergenic -25265 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 1340-2 chr12 34651318 34652324 + 3 NA Intergenic ALR/Alpha|Satellite|centr 629325 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 621-84 chr4 59032186 59032535 + 3 NA intron (NR_133942, intron 1 of 1) L1MB7|LINE|L1 18787 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 690-79 chr4 63708480 63708914 + 3 NA Intergenic Intergenic 700753 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 534-180 chr4 96261385 96261761 + 3 NA Intergenic Intergenic -49130 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 730-16 chr14 72218452 72218963 + 3 NA intron (NM_001370288, intron 2 of 16) AluSc|SINE|Alu 285180 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 566-173 chr7 384854 385249 + 3 NA Intergenic AluY|SINE|Alu 5626 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 557-81 chr19 35608160 35608423 + 3 NA Intergenic L2b|LINE|L2 -4444 NM_015302 23354 Hs.7426 NM_015302 ENSG00000249115 HAUS5 KIAA0841|dgt5 HAUS augmin like complex subunit 5 protein-coding 225-327 chr7 43152737 43152863 + 3 NA intron (NR_135295, intron 5 of 6) intron (NR_135295, intron 5 of 6) 1905 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 448-307 chrX 85227032 85227275 + 3 NA intron (NM_001367858, intron 1 of 11) L2|LINE|L2 16447 NR_110651 101928128 Hs.636014 NR_110651 LOC101928128 - uncharacterized LOC101928128 ncRNA 380-263 chr3 178688956 178689110 + 3 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 130183 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 645-51 chr19 39780405 39780801 + 3 NA intron (NM_001143832, intron 1 of 2) HAL1|LINE|L1 4009 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 942-36 chr6 61517700 61518143 + 3 NA Intergenic ALR/Alpha|Satellite|centr -56209 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 544-153 chr3 137157806 137158192 + 3 NA Intergenic MIRb|SINE|MIR 200016 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 499-270 chr8 121218829 121219117 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -406927 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 518-198 chr4 46132515 46132724 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -8565 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 345-548 chr9 26007192 26007452 + 3 NA Intergenic Intergenic -59353 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 435-136 chr20 3501199 3501394 + 3 NA intron (NM_001323332, intron 1 of 25) L1PA3|LINE|L1 30278 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 297-527 chrX 91734072 91734287 + 3 NA Intergenic L1PA10|LINE|L1 -101282 NM_001168363 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 336-240 chr19 29176078 29176217 + 3 NA Intergenic L1MA2|LINE|L1 37004 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 628-90 chr3 117800031 117800300 + 3 NA Intergenic Intergenic -109240 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 722-52 chr3 148272913 148273351 + 3 NA Intergenic Intergenic -7759 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 481-263 chr6 63486302 63486524 + 3 NA Intergenic LTR75B|LTR|ERVL -85599 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 293-233 chr20 57775862 57775974 + 3 NA Intergenic L1M5|LINE|L1 -64382 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 400-220 chr3 99334417 99334685 + 3 NA Intergenic L1MC2|LINE|L1 -304043 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 508-25 chr10 35390318 35390526 + 3 NA intron (NM_001282852, intron 1 of 8) intron (NM_001282852, intron 1 of 8) 53548 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 349-523 chr9 119886161 119886360 + 3 NA Intergenic MER58B|DNA|hAT-Charlie -48800 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 484-219 chr5 106156458 106156682 + 3 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 854444 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 486-226 chr4 76795458 76795641 + 3 NA Intergenic MER39|LTR|ERV1 102595 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 309-563 chr8 129784349 129784524 + 3 NA intron (NM_031415, intron 1 of 13) L1MA2|LINE|L1 2188 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 175-102 chr3 97871459 97871559 + 3 NA intron (NM_153605, intron 3 of 21) intron (NM_153605, intron 3 of 21) 49498 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 670-82 chr3 191981958 191982301 + 3 NA Intergenic Intergenic -256501 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 582-22 chr11 134100976 134101177 + 3 NA intron (NM_001205329, intron 1 of 7) intron (NM_001205329, intron 1 of 7) 32004 NM_032801 83700 Hs.150718 NM_032801 ENSG00000166086 JAM3 JAM-2|JAM-3|JAM-C|JAMC junctional adhesion molecule 3 protein-coding 577-20 chr1 233443171 233443381 + 3 NA Intergenic Intergenic 115552 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 447-225 chr5 178819913 178820155 + 3 NA Intergenic Intergenic -1599 NR_135095 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 773-29 chr4 31688004 31688468 + 3 NA Intergenic Intergenic 181692 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 552-212 chr8 108635516 108635871 + 3 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 151901 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 587-15 chr10 81734248 81734639 + 3 NA Intergenic Intergenic -140751 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 489-263 chr9 14381374 14381676 + 3 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) 17458 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 517-151 chr2 212064625 212064900 + 3 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 361598 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 473-237 chr6 15103238 15103535 + 3 NA Intergenic Intergenic -142683 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 302-203 chr2 29425632 29425739 + 3 NA intron (NM_004304, intron 4 of 28) L1M4b|LINE|L1 49692 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 1009-14 chr3 133022081 133022489 + 3 NA Intergenic Intergenic -16003 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 1070-17 chr6 164514544 164515256 + 3 NA Intergenic MIR|SINE|MIR 307163 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 321-361 chr3 10745437 10745656 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 18663 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 415-61 chr12 91953618 91953816 + 3 NA Intergenic Intergenic 187996 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 218-319 chr8 62232177 62232341 + 3 NA Intergenic Intergenic -16595 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 779-34 chr2 185754273 185754637 + 3 NA intron (NM_173651, intron 8 of 22) intron (NM_173651, intron 8 of 22) -13978 NR_110217 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 404-48 chr10 81859165 81859328 + 3 NA Intergenic L1MA9|LINE|L1 -15948 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 733-3 chr1 57528198 57528523 + 3 NA intron (NM_001353980, intron 4 of 5) L1MEg|LINE|L1 -103439 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 474-99 chr16 12590088 12590253 + 3 NA Intergenic AluSz|SINE|Alu -130151 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 374-236 chr22 40438831 40439024 + 3 NA intron (NM_020831, intron 4 of 14) intron (NM_020831, intron 4 of 14) 24513 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 388-57 chr10 120552494 120552713 + 3 NA intron (NM_001030059, intron 5 of 6) intron (NM_001030059, intron 5 of 6) -45346 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 463-230 chr5 42195681 42195886 + 3 NA Intergenic Intergenic -20438 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 549-75 chr16 78653038 78653281 + 3 NA intron (NM_001291997, intron 7 of 7) L1ME4a|LINE|L1 553505 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 650-42 chr19 2877311 2877748 + 3 NA exon (NM_024967, exon 4 of 4) exon (NM_024967, exon 4 of 4) 10194 NR_145838 80032 Hs.287433 NM_024967 ENSG00000172000 ZNF556 - zinc finger protein 556 protein-coding 514-94 chr14 86056478 86056781 + 3 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 121951 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 486-267 chr6 164843005 164843383 + 3 NA Intergenic Intergenic -21131 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 595-122 chr4 56724339 56724671 + 3 NA Intergenic L1ME3|LINE|L1 -42799 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 1071 chr1 168381311 168381881 + 3 NA Intergenic L2|LINE|L2 6072 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 1109-4 chr18 4786020 4786661 + 3 NA Intergenic L1ME2|LINE|L1 -294842 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 616-18 chr10 81984889 81985255 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 107385 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 599-104 chr5 13226587 13226886 + 3 NA Intergenic Intergenic -193850 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 616-103 chr3 22691985 22692268 + 3 NA Intergenic Intergenic 510452 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 398-223 chr3 163166523 163166708 + 3 NA Intergenic L1MA1|LINE|L1 136686 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 492-117 chr19 29157223 29157408 + 3 NA Intergenic Intergenic 55836 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 454-47 chr11 11130749 11131040 + 3 NA Intergenic L1MC4a|LINE|L1 222356 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 848-29 chr3 67969853 67970440 + 3 NA Intergenic Intergenic -21446 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 738-50 chr5 30516305 30516702 + 3 NA Intergenic Intergenic 635943 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 543-174 chr4 360939 361298 + 3 NA 3' UTR (NM_001348279, exon 4 of 4) 3' UTR (NM_001348279, exon 4 of 4) 10961 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 728-103 chr8 126768318 126768827 + 3 NA Intergenic Intergenic -210094 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 434-191 chr3 107354297 107354529 + 3 NA Intergenic L1MEg|LINE|L1 -23026 NM_032600 84692 Hs.164799 NM_032600 ENSG00000138483 CCDC54 NYD-SP17|SP17 coiled-coil domain containing 54 protein-coding 943-3 chr10 51730061 51730457 + 3 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -30664 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 622-18 chr12 10756854 10757163 + 3 NA intron (NR_120463, intron 1 of 6) AluSx|SINE|Alu 6774 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 276-119 chr12 127274686 127274893 + 3 NA intron (NR_146537, intron 3 of 3) intron (NR_146537, intron 3 of 3) 9494 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 366-40 chr10 16076958 16077145 + 3 NA Intergenic Intergenic -216518 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 332-537 chr8 105462198 105462360 + 3 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 142736 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 634-152 chr8 59100617 59100975 + 3 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 18351 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 378-156 chr16 26368593 26368750 + 3 NA Intergenic Intergenic 343434 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 361-448 chr8 88070789 88070958 + 3 NA intron (NM_005941, intron 7 of 9) L1ME1|LINE|L1 -196858 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 448-268 chr7 113941436 113941625 + 3 NA Intergenic Intergenic -22521 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 407-240 chr5 13694228 13694469 + 3 NA intron (NM_001369, intron 78 of 78) MER131|DNA?|DNA? 250132 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 410-50 chr11 32464762 32465025 + 3 NA Intergenic AluJb|SINE|Alu 28854 NR_120546 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 989-9 chr19 30875793 30876235 + 3 NA Intergenic Intergenic -291496 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 721-55 chr3 74279784 74280245 + 3 NA intron (NM_020872, intron 19 of 21) L1MA1|LINE|L1 241126 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 428-63 chr14 23601898 23602124 + 3 NA Intergenic Intergenic -23221 NM_001146028 84502 Hs.597841 NM_032452 ENSG00000092051 JPH4 JP4|JPHL1 junctophilin 4 protein-coding 681-39 chr2 106361524 106361840 + 3 NA Intergenic L1MC4|LINE|L1 -8063 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 345-562 chr9 118074526 118074715 + 3 NA Intergenic Intergenic 370217 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 267-453 chrUn_KI270442v1 356935 357107 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 518-15 chr1 227646192 227646510 + 3 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 51356 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 445-36 chr11 63359402 63359630 + 3 NA Intergenic L1PA12|LINE|L1 -10269 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 644-91 chr7 7481514 7481873 + 3 NA intron (NM_001037763, intron 13 of 34) intron (NM_001037763, intron 13 of 34) 54180 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 788-28 chr19 36832522 36832863 + 3 NA intron (NM_001242800, intron 1 of 4) MLT1F|LTR|ERVL-MaLR 5335 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 878-36 chr5 92877932 92878464 + 3 NA Intergenic Intergenic 693145 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 741-54 chr5 62072422 62072840 + 3 NA Intergenic Intergenic -233531 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 462-18 chr1 233952275 233952496 + 3 NA intron (NM_173508, intron 2 of 7) L1M7|LINE|L1 47709 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 483-47 chr12 29117404 29117603 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -31775 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 206-178 chr4 43757483 43757584 + 3 NA Intergenic Intergenic -259328 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 372-363 chr4 70368620 70368775 + 3 NA Intergenic L2a|LINE|L2 7937 NM_012390 26952 Hs.701334 NM_012390 ENSG00000109208 SMR3A P-B1|PBI|PRL5|PROL5 submaxillary gland androgen regulated protein 3A protein-coding 729-82 chr9 27803294 27803614 + 3 NA Intergenic Intergenic -229588 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1129-13 chr22 44064067 44064542 + 3 NA intron (NM_001243386, intron 1 of 11) intron (NM_001243386, intron 1 of 11) -4813 NM_001243385 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 384-223 chr3 68602776 68603000 + 3 NA Intergenic L1MA8|LINE|L1 102251 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 874-10 chr19 57988039 57988542 + 3 NA exon (NM_001348022, exon 6 of 7) exon (NM_001348022, exon 6 of 7) -13756 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 433-141 chr2 156642851 156643094 + 3 NA Intergenic L1MA6|LINE|L1 206593 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 481-143 chr2 69199751 69199927 + 3 NA intron (NM_032208, intron 17 of 17) intron (NM_032208, intron 17 of 17) 96157 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 445-145 chr2 228331185 228331432 + 3 NA Intergenic L3|LINE|CR1 -149621 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 934-20 chr3 68691285 68691881 + 3 NA Intergenic L1MEd|LINE|L1 190946 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 588-165 chr8 136969037 136969396 + 3 NA Intergenic Intergenic 438418 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 430-350 chrX 154974817 154975081 + 3 NA intron (NM_000132, intron 6 of 25) L1MA6|LINE|L1 47774 NM_000132 2157 Hs.632836 NM_000132 ENSG00000185010 F8 AHF|DXS1253E|F8B|F8C|FVIII|HEMA coagulation factor VIII protein-coding 398-165 chr2 79739905 79740130 + 3 NA intron (NM_001282598, intron 2 of 17) L1PA13|LINE|L1 -90658 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 511-33 chr10 122964154 122964403 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -10051 NM_024942 80007 Hs.501286 NM_024942 ENSG00000119965 C10orf88 - chromosome 10 open reading frame 88 protein-coding 653-23 chr11 70489036 70489410 + 3 NA intron (NM_133266, intron 9 of 10) intron (NM_133266, intron 9 of 10) 90694 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 401-262 chr5 79583903 79584097 + 3 NA Intergenic L1ME3Cz|LINE|L1 -28417 NM_001114394 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 452-130 chr2 101947763 101948034 + 3 NA Intergenic Intergenic -35567 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 377-10 chr1 85920914 85921067 + 3 NA intron (NM_152890, intron 24 of 59) L1PA6|LINE|L1 -212557 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 720-53 chr20 47507687 47508160 + 3 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 6036 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 773-24 chr3 21101741 21102116 + 3 NA Intergenic L1PA15|LINE|L1 -303798 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 371-190 chr2 146359078 146359293 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -227872 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 550-25 chr10 33497572 33497810 + 3 NA Intergenic Intergenic -162786 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 614-113 chr6 138415290 138415696 + 3 NA 3' UTR (NM_001326381, exon 4 of 4) 3' UTR (NM_001326381, exon 4 of 4) 11270 NM_014320 23593 Hs.486589 NM_014320 ENSG00000051620 HEBP2 C6ORF34B|C6orf34|PP23|SOUL heme binding protein 2 protein-coding 783-35 chr18 75788118 75788691 + 3 NA Intergenic Intergenic -76001 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 532-131 chr2 125600810 125601095 + 3 NA Intergenic Intergenic 517033 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 852-33 chr3 59002845 59003268 + 3 NA intron (NR_147235, intron 4 of 6) intron (NR_147235, intron 4 of 6) 46969 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 625-119 chr8 126483034 126483396 + 3 NA Intergenic Intergenic 75263 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 535-200 chr5 78856306 78856536 + 3 NA intron (NM_198709, intron 6 of 7) MamGypsy2-I|LTR|Gypsy 128889 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 495-198 chr5 64111418 64111626 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR -54321 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 669-101 chr7 22648094 22648442 + 3 NA Intergenic Intergenic 17265 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 445-226 chr5 158786763 158786950 + 3 NA intron (NM_001324107, intron 9 of 15) intron (NM_001324107, intron 9 of 15) 311100 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 983-12 chr22 43576896 43577489 + 3 NA intron (NM_198856, intron 23 of 29) intron (NM_198856, intron 23 of 29) 60938 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 278-366 chr6 56282816 56282956 + 3 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) -35306 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 587-14 chr10 76080772 76081150 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 298200 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 431-285 chr8 13937863 13938138 + 3 NA Intergenic L2a|LINE|L2 308310 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 881-14 chr16 83736140 83736724 + 3 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 67544 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 417-226 chr5 101010618 101010855 + 3 NA Intergenic Intergenic -107454 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 890-19 chr2 123237469 123237900 + 3 NA Intergenic Intergenic -164203 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 350-509 chr8 57964030 57964277 + 3 NA Intergenic Intergenic -14205 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 369-258 chr3 26198830 26198988 + 3 NA Intergenic Intergenic -325214 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 897-20 chr2 95212784 95213360 + 3 NA Intergenic Intergenic 47263 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 774-75 chr5 141367610 141367988 + 3 NA intron (NM_018918, intron 1 of 3) intron (NM_018918, intron 1 of 3) -2443 NM_032097 56102 Hs.368160 NM_018924 ENSG00000262209 PCDHGB3 PCDH-GAMMA-B3 protocadherin gamma subfamily B, 3 protein-coding 854-46 chrX 64716584 64717073 + 3 NA Intergenic L1MA5|LINE|L1 259622 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 313-240 chr2 31816870 31817016 + 3 NA Intergenic L1MA2|LINE|L1 -12963 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 353-375 chr4 67304067 67304287 + 3 NA Intergenic Intergenic 117823 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 400-23 chr1 215284266 215284432 + 3 NA Intergenic Intergenic 201612 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 535-249 chr8 134942227 134942444 + 3 NA Intergenic Intergenic 92400 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 416-306 chr7 33279390 33279609 + 3 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 149935 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 549-96 chr19 37799037 37799278 + 3 NA Intergenic Intergenic -18254 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 548-222 chr8 14426095 14426419 + 3 NA intron (NM_001322881, intron 2 of 6) L2a|LINE|L2 427253 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 580-31 chr11 115994103 115994380 + 3 NA Intergenic L2a|LINE|L2 -234041 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 550-208 chr7 4523993 4524268 + 3 NA Intergenic Intergenic -158165 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 798-43 chr4 70279400 70279796 + 3 NA Intergenic Intergenic 36982 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 425-116 chr18 58677330 58677493 + 3 NA intron (NM_006785, intron 1 of 16) intron (NM_006785, intron 1 of 16) -5538 NM_001289967 101927322 Hs.644875 NM_001289967 LOC101927322 - uncharacterized LOC101927322 protein-coding 690-64 chr2 206359173 206359635 + 3 NA Intergenic L1M2|LINE|L1 -84128 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 489-208 chr5 89233881 89234115 + 3 NA intron (NR_136219, intron 7 of 9) MER63C|DNA|hAT-Blackjack -329893 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 617-121 chr7 22616086 22616521 + 3 NA Intergenic L1M6|LINE|L1 49230 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 523-30 chr10 53187846 53188130 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -416288 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 615-30 chr14 38009542 38009897 + 3 NA Intergenic Intergenic -107595 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 577-123 chr3 121360151 121360491 + 3 NA intron (NM_001348343, intron 21 of 27) L1MA1|LINE|L1 185667 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 964 chr1 37204328 37204852 + 3 NA Intergenic L1MA7|LINE|L1 43027 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 467-211 chr5 6019784 6019957 + 3 NA Intergenic Intergenic 317422 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 364-304 chr4 62926152 62926320 + 3 NA Intergenic Intergenic -764471 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 497-29 chr10 109366913 109367136 + 3 NA Intergenic L1PREC2|LINE|L1 556222 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 603-91 chr2 119885793 119886262 + 3 NA intron (NM_002830, intron 9 of 26) intron (NM_002830, intron 9 of 26) 126105 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 501-130 chr20 17761472 17761760 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR 61668 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 646-137 chr9 80620270 80620563 + 3 NA Intergenic L1MEg|LINE|L1 645393 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 411-208 chr4 90344777 90345024 + 3 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 109869 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 212-199 chr22 34735725 34735835 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 262136 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 143-35 chr18 4749636 4749697 + 3 NA Intergenic Intergenic -294359 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 623-36 chr15 59183547 59183841 + 3 NA intron (NM_004998, intron 18 of 27) L1MA2|LINE|L1 -12432 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 456-311 chr8 59689920 59690203 + 3 NA Intergenic Intergenic 570851 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 718-98 chr9 111544399 111544861 + 3 NA 3' UTR (NM_133464, exon 6 of 6) 3' UTR (NM_133464, exon 6 of 6) 19451 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 684-91 chr5 12842858 12843236 + 3 NA Intergenic L1PA10|LINE|L1 175188 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 598-25 chr11 14046918 14047296 + 3 NA intron (NM_006108, intron 3 of 15) L1M5|LINE|L1 84384 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 519-242 chr8 129671151 129671460 + 3 NA intron (NR_130917, intron 1 of 3) L1ME1|LINE|L1 8934 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 689-80 chr5 46154409 46154829 + 3 NA Intergenic ALR/Alpha|Satellite|centr -458239 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 436-248 chr5 118400677 118400929 + 3 NA intron (NR_104610, intron 9 of 9) L1PA16|LINE|L1 118229 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 495-168 chr4 19542979 19543312 + 3 NA Intergenic Intergenic -708760 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 481-174 chr20 39732793 39733052 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -271539 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 337-261 chr2 106785180 106785370 + 3 NA Intergenic Intergenic 100753 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 708-50 chr3 153555885 153556277 + 3 NA intron (NR_146713, intron 4 of 6) intron (NR_146713, intron 4 of 6) 71586 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 136-65 chr4 84941705 84941755 + 3 NA intron (NM_014991, intron 1 of 67) L1M5|LINE|L1 -23886 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 260-52 chr10 57591760 57591891 + 3 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -287266 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 582-167 chr9 86215121 86215410 + 3 NA Intergenic L1MEg|LINE|L1 40768 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 1112-10 chr4 104353375 104353959 + 3 NA Intergenic L1MA3|LINE|L1 -137298 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 570-95 chr17 71267129 71267459 + 3 NA Intergenic L1MC3|LINE|L1 -65115 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 553-102 chr2 16590178 16590549 + 3 NA intron (NM_030797, intron 2 of 11) intron (NM_030797, intron 2 of 11) 75471 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 383-406 chr8 140035192 140035397 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 65241 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 396-109 chr14 84396371 84396578 + 3 NA Intergenic L2a|LINE|L2 -875458 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 1368-3 chr7 40441123 40441885 + 3 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 306528 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 1273-5 chr15 71310868 71311642 + 3 NA intron (NM_024817, intron 5 of 16) MLT1J|LTR|ERVL-MaLR -122196 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 705-62 chr21 14299785 14300206 + 3 NA non-coding (NR_003087, exon 6 of 6) non-coding (NR_003087, exon 6 of 6) 26196 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 348-409 chr5 60372871 60373027 + 3 NA promoter-TSS (NM_001364600) promoter-TSS (NM_001364600) -286 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 528-78 chr13 92822947 92823175 + 3 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -101447 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 589-166 chr9 90500782 90501031 + 3 NA intron (NR_034157, intron 5 of 5) MER4B|LTR|ERV1 -67417 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 563-24 chr10 82940131 82940584 + 3 NA intron (NR_163253, intron 6 of 10) MLT1C|LTR|ERVL-MaLR -707437 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 437-36 chr11 11203100 11203277 + 3 NA Intergenic Intergenic 150062 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 247-296 chr4 58415787 58415908 + 3 NA Intergenic Intergenic 120481 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 803-58 chr8 118247335 118247802 + 3 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -135749 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 680-11 chr1 217307555 217307902 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -170026 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 323-362 chr4 38255073 38255211 + 3 NA Intergenic Intergenic -111772 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 378-450 chr9 29391245 29391458 + 3 NA Intergenic L1MA9|LINE|L1 -177750 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 443-24 chr1 206877842 206878172 + 3 NA Intergenic LTR8|LTR|ERV1 12198 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 427-274 chr9 11151942 11152158 + 3 NA Intergenic L1ME1|LINE|L1 538844 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 456-253 chr5 86030117 86030440 + 3 NA Intergenic Intergenic -252166 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 468-192 chr3 25499314 25499544 + 3 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 41119 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 1123-19 chr7 104454124 104454829 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 125820 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 552-30 chr11 10436548 10436771 + 3 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -13662 NM_001172431 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 834-24 chr2 213430228 213430767 + 3 NA intron (NR_047660, intron 8 of 14) MER30|DNA|hAT-Charlie 146033 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 760-51 chr4 32706252 32706670 + 3 NA Intergenic Intergenic 355423 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 748-53 chr20 15494354 15494713 + 3 NA intron (NM_001351663, intron 7 of 17) L1ME3|LINE|L1 297693 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 495-29 chr10 78563830 78564152 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 296649 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 548-76 chr14 68241629 68241971 + 3 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 386987 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 671-50 chr2 168021142 168021531 + 3 NA intron (NM_013233, intron 14 of 17) intron (NM_013233, intron 14 of 17) -80192 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 803-6 chr10 85078065 85078356 + 3 NA Intergenic L1MC|LINE|L1 120695 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 588-97 chr3 67644799 67645037 + 3 NA intron (NM_001177599, intron 1 of 10) intron (NM_001177599, intron 1 of 10) 9696 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 451-82 chr15 97015544 97015793 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 232233 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 395-176 chr2 129033551 129033781 + 3 NA Intergenic L1PB3|LINE|L1 169066 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 256-354 chr6 38007527 38007662 + 3 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 187867 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 392-136 chr2 13782463 13782749 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 618352 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 477-232 chr5 9090862 9091193 + 3 NA intron (NM_003966, intron 16 of 22) intron (NM_003966, intron 16 of 22) -37132 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 926-16 chr2 225889137 225889689 + 3 NA Intergenic Intergenic -253381 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 464-8 chr1 107384778 107385076 + 3 NA intron (NM_001113226, intron 2 of 6) intron (NM_001113226, intron 2 of 6) 236858 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 1106-8 chr5 92872610 92873362 + 3 NA Intergenic L1M1|LINE|L1 698357 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 454-186 chr20 15311990 15312191 + 3 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 115250 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 963-14 chr16 11451638 11452121 + 3 NA intron (NM_001370704, intron 28 of 66) intron (NM_001370704, intron 28 of 66) -13381 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 919-9 chr18 5120389 5120956 + 3 NA Intergenic L1M2|LINE|L1 39490 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 396-387 chrX 99931739 99931960 + 3 NA Intergenic L2b|LINE|L2 478424 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 444-3 chr1 34304215 34304385 + 3 NA Intergenic AluSz|SINE|Alu 127393 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 564-153 chr5 46258786 46258986 + 3 NA Intergenic ALR/Alpha|Satellite|centr -562506 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 666-78 chr3 82961262 82961616 + 3 NA Intergenic Intergenic 975297 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 475-301 chr9 137338227 137338471 + 3 NA intron (NM_017820, intron 17 of 21) L1MEd|LINE|L1 -36078 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 580-153 chr5 72413993 72414348 + 3 NA Intergenic Intergenic 93240 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 351-20 chr1 205417671 205417833 + 3 NA intron (NM_001199051, intron 2 of 4) intron (NM_001199051, intron 2 of 4) 4304 NM_001199050 93273 Hs.655520 NM_001001552 ENSG00000186007 LEMD1 CT50|LEMP-1 LEM domain containing 1 protein-coding 444-270 chr8 126957177 126957475 + 3 NA Intergenic Intergenic -55828 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 435-104 chr17 61738297 61738473 + 3 NA intron (NM_032043, intron 16 of 19) intron (NM_032043, intron 16 of 19) 125174 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 478-32 chr10 97207651 97207856 + 3 NA intron (NR_037909, intron 11 of 14) intron (NR_037909, intron 11 of 14) -21794 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 685-21 chr14 48064031 48064495 + 3 NA Intergenic L1MCa|LINE|L1 -269249 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 750-47 chr3 82943458 82944010 + 3 NA Intergenic L1MEf|LINE|L1 957592 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 614-81 chr3 48632561 48632970 + 3 NA TTS (NR_106882) TTS (NR_106882) 933 NR_106882 102465495 NR_106882 ENSG00000284364 MIR6824 hsa-mir-6824 microRNA 6824 ncRNA 602-37 chr15 24968778 24969061 + 3 NA TTS (NM_022804) TTS (NM_022804) -13075 NR_022011 347746 Hs.733072 NR_022011 PWARSN PAR-SN|PARSN Prader Willi/Angelman region RNA, SNRPN neighbor ncRNA 987-14 chr6 49733205 49733670 + 3 NA intron (NM_001368123, intron 5 of 7) intron (NM_001368123, intron 5 of 7) 10951 NM_006061 10321 Hs.404466 NM_006061 ENSG00000096006 CRISP3 Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 cysteine rich secretory protein 3 protein-coding 381-259 chr3 166941080 166941266 + 3 NA Intergenic Intergenic 42490 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 412-306 chr7 36397074 36397321 + 3 NA intron (NM_001284302, intron 2 of 22) intron (NM_001284302, intron 2 of 22) -6840 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 394-253 chr5 7004862 7005025 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -177022 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 594-49 chr15 96715153 96715382 + 3 NA Intergenic Intergenic 66387 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 386-216 chr21 31830829 31831059 + 3 NA Intergenic Intergenic -42076 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 412-244 chr5 2923722 2923883 + 3 NA Intergenic L1M5|LINE|L1 5948 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 577-163 chr5 178942891 178943189 + 3 NA intron (NM_001323307, intron 2 of 4) MIRb|SINE|MIR 1842 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 526-246 chr8 65335985 65336192 + 3 NA Intergenic Intergenic -155748 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 403-226 chr4 82036946 82037125 + 3 NA Intergenic Intergenic 336956 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 674-9 chr10 65889102 65889609 + 3 NA Intergenic Intergenic 317930 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 437-293 chr9 29075393 29075590 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 136808 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 746-41 chr2 125440937 125441308 + 3 NA Intergenic L1ME3A|LINE|L1 676863 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 378-274 chr3 16862187 16862408 + 3 NA Intergenic Intergenic -22658 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 480-52 chr12 20100940 20101210 + 3 NA Intergenic Intergenic 26826 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 419-35 chr10 78881700 78881886 + 3 NA Intergenic L1MD2|LINE|L1 185655 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 526-230 chr7 53484512 53484846 + 3 NA Intergenic Intergenic 327252 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 542-38 chr11 116060213 116060549 + 3 NA Intergenic L2c|LINE|L2 -300181 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 589-84 chr3 670982 671259 + 3 NA intron (NR_110118, intron 1 of 3) L1MD2|LINE|L1 79015 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 1152-10 chr7 46462690 46463454 + 3 NA Intergenic Intergenic 234050 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 238-371 chr8 31878436 31878571 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -147233 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 826 chr1 49319667 49320040 + 3 NA intron (NR_136623, intron 2 of 12) MLT1A1|LTR|ERVL-MaLR 62442 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 736-5 chr1 160369412 160369787 + 3 NA intron (NM_005598, intron 1 of 1) L1MB2|LINE|L1 2528 NM_005598 4807 Hs.30956 NM_005598 ENSG00000171786 NHLH1 HEN1|NSCL|NSCL1|bHLHa35 nescient helix-loop-helix 1 protein-coding 242-102 chr14 55652862 55653004 + 3 NA exon (NM_001271014, exon 27 of 44) exon (NM_001271014, exon 27 of 44) 72726 NR_073129 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 520-330 chrX 45770676 45770884 + 3 NA Intergenic Intergenic -23656 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 688-37 chr13 70998381 70998788 + 3 NA Intergenic L1M4a1|LINE|L1 -16557 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 889-33 chr7 36937273 36937633 + 3 NA intron (NM_001206480, intron 16 of 21) MLT1C|LTR|ERVL-MaLR -18021 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 982-22 chr4 86348217 86348662 + 3 NA intron (NM_001363657, intron 2 of 13) MIR|SINE|MIR 6205 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 324-313 chr20 45117458 45117655 + 3 NA Intergenic L1M4|LINE|L1 -2382 NM_145652 149708 Hs.375031 NM_145652 ENSG00000175121 WFDC5 PRG5|WAP1|dJ211D12.5 WAP four-disulfide core domain 5 protein-coding 825-10 chr14 88292030 88292478 + 3 NA intron (NM_021161, intron 1 of 6) LTR78B|LTR|ERV1 -21343 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 245-78 chr11 84535707 84535868 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 185155 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 508-162 chr4 30091217 30091521 + 3 NA Intergenic Intergenic -629000 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 587-38 chr12 23062856 23063224 + 3 NA Intergenic Intergenic -112596 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 485-245 chr6 67304826 67305063 + 3 NA Intergenic L1PB3|LINE|L1 -750407 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 1237-6 chr5 105701773 105702350 + 3 NA Intergenic LTR43|LTR|ERV1 602587 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 417-202 chr4 71210284 71210443 + 3 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 23077 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 218-221 chr3 104072521 104072658 + 3 NA Intergenic L1ME3A|LINE|L1 -548473 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 406-34 chr10 53798481 53798723 + 3 NA Intergenic Intergenic -687628 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 1192-6 chr22 26919675 26920548 + 3 NA intron (NR_110540, intron 2 of 2) MIRc|SINE|MIR 16819 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 321-360 chr3 8929208 8929420 + 3 NA intron (NM_020165, intron 7 of 12) L1ME1|LINE|L1 34158 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 382-239 chr20 40138969 40139121 + 3 NA Intergenic L1ME3F|LINE|L1 134584 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 444-138 chr20 19697808 19698080 + 3 NA intron (NM_020689, intron 14 of 16) MSTA|LTR|ERVL-MaLR -188577 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 376-294 chr4 116095529 116095718 + 3 NA Intergenic Intergenic -204102 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 581-67 chr18 69806966 69807289 + 3 NA intron (NM_152721, intron 7 of 7) MER5A|DNA|hAT-Charlie 140746 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 426-93 chr16 51484409 51484592 + 3 NA Intergenic L1M4|LINE|L1 -278019 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 736-28 chr15 100747286 100747737 + 3 NA Intergenic L1MDa|LINE|L1 -102241 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 637-68 chr2 189349189 189349628 + 3 NA Intergenic Intergenic -92025 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 607-132 chr6 164840911 164841233 + 3 NA Intergenic Intergenic -19009 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 341-149 chr14 66640870 66641050 + 3 NA intron (NM_001024218, intron 1 of 21) L1ME3A|LINE|L1 133553 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 513-71 chr14 45446636 45446904 + 3 NA Intergenic L1MA4A|LINE|L1 -193568 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 886-32 chr6 152653325 152653752 + 3 NA Intergenic L1PA8|LINE|L1 -16176 NM_182961 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 317-218 chr2 34605305 34605430 + 3 NA Intergenic Intergenic -72190 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 335-431 chr5 104717177 104717395 + 3 NA Intergenic Intergenic -382188 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 634-146 chr7 104565173 104565728 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 236794 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 441-19 chr1 239478731 239478972 + 3 NA intron (NM_001347716, intron 1 of 7) L1MEf|LINE|L1 92283 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 346-117 chr13 54667777 54667952 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -355816 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 251-139 chr18 40830170 40830286 + 3 NA Intergenic Intergenic 690449 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 719-30 chr16 63198424 63198740 + 3 NA Intergenic L1MA9|LINE|L1 -1162144 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 775-32 chr15 95765747 95766119 + 3 NA Intergenic L1M5|LINE|L1 332840 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 716-79 chr6 147567618 147568085 + 3 NA 3' UTR (NM_001030060, exon 2 of 2) 3' UTR (NM_001030060, exon 2 of 2) 59161 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 823-14 chr16 35767127 35767725 + 3 NA Intergenic ALR/Alpha|Satellite|centr 20874 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 293-441 chr8 92612752 92612970 + 3 NA intron (NR_125827, intron 3 of 4) MIR3|SINE|MIR 42633 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 685-66 chr3 104480823 104481209 + 3 NA Intergenic L1PREC2|LINE|L1 -885697 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 390-42 chr10 78652065 78652260 + 3 NA Intergenic Intergenic 384820 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 483-101 chr19 58224646 58224876 + 3 NA Intergenic Intergenic -3920 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 775-70 chr5 129275598 129275990 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 121353 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 435-142 chr21 23029764 23030041 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -49382 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 457-14 chr1 166272769 166272933 + 3 NA Intergenic MER20|DNA|hAT-Charlie -106096 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 525-71 chr14 52576436 52576620 + 3 NA intron (NM_001353361, intron 1 of 7) L1PB4|LINE|L1 23692 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 498-294 chrX 80116422 80116752 + 3 NA Intergenic L1MA10|LINE|L1 93527 NM_001303475 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 448-260 chr7 54090619 54090777 + 3 NA Intergenic Intergenic -239999 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 278-165 chr18 954439 954600 + 3 NA Intergenic Intergenic -26526 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 536-235 chr8 115041135 115041408 + 3 NA Intergenic Intergenic 626742 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 830-50 chr8 36319280 36319807 + 3 NA Intergenic Intergenic -464831 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 400-55 chr11 70942933 70943159 + 3 NA intron (NM_012309, intron 9 of 24) L2a|LINE|L2 -70678 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 521-151 chr21 44620499 44620825 + 3 NA intron (NM_144991, intron 1 of 11) L1MEg|LINE|L1 -6431 NM_198690 386676 Hs.474000 NM_198690 ENSG00000221837 KRTAP10-9 KAP10.9|KAP18.9|KRTAP18-9 keratin associated protein 10-9 protein-coding 339-572 chr8 82235474 82235660 + 3 NA Intergenic L1M5|LINE|L1 -393281 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 664-96 chr6 40593478 40593950 + 3 NA Intergenic L2b|LINE|L2 -6350 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 384-215 chr22 47185903 47186181 + 3 NA Intergenic L1MA1|LINE|L1 -159529 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 546-189 chr5 60466206 60466420 + 3 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -21400 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 499-85 chr17 16615679 16616001 + 3 NA Intergenic L1MEg|LINE|L1 38010 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 585-168 chr9 27605711 27606204 + 3 NA Intergenic Intergenic -32091 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 465-21 chr10 19000819 19001066 + 3 NA Intergenic Intergenic -47859 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 750-44 chr21 14482473 14482788 + 3 NA Intergenic Intergenic 63685 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 666-43 chr18 4942640 4943052 + 3 NA Intergenic MIR|SINE|MIR -138336 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 375-364 chr6 153209813 153210013 + 3 NA Intergenic Intergenic -78631 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 395-324 chr7 144471762 144471956 + 3 NA intron (NM_001042482, intron 7 of 7) intron (NM_001042482, intron 7 of 7) -61632 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 612-113 chr5 64548162 64548631 + 3 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) -27254 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 662-47 chr2 114205414 114205675 + 3 NA Intergenic Intergenic -225560 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 446-144 chr2 54879291 54879488 + 3 NA intron (NM_001039753, intron 15 of 40) L1MA6|LINE|L1 130883 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 408-221 chr3 189629921 189630107 + 3 NA intron (NM_001329964, intron 1 of 13) intron (NM_001329964, intron 1 of 13) -1375 NM_001329148 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 576-89 chr2 130934517 130934886 + 3 NA intron (NM_001367493, intron 3 of 13) AluSz|SINE|Alu 97787 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 578-164 chr7 138232123 138232456 + 3 NA Intergenic Intergenic 108531 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 920-7 chr12 37931354 37931971 + 3 NA Intergenic ALR/Alpha|Satellite|centr -385112 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1897-2 chr5 46230218 46231340 + 3 NA Intergenic ALR/Alpha|Satellite|centr -534399 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 341-558 chr9 20538755 20538906 + 3 NA intron (NM_001286691, intron 2 of 10) Tigger1|DNA|TcMar-Tigger -36488 NR_039685 100616441 NR_039685 ENSG00000264941 MIR4474 - microRNA 4474 ncRNA 627-87 chr5 32443293 32443547 + 3 NA intron (NM_016107, intron 2 of 19) intron (NM_016107, intron 2 of 19) 1320 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 392-56 chr12 24533583 24533845 + 3 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 28777 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 373-222 chr2 173518148 173518298 + 3 NA Intergenic L1MEc|LINE|L1 163351 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 913-4 chr10 81795687 81796143 + 3 NA Intergenic Intergenic -79279 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 462-83 chr14 66411918 66412179 + 3 NA Intergenic Intergenic -74323 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 396-157 chr2 36112338 36112533 + 3 NA Intergenic L1ME4c|LINE|L1 243135 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 285-64 chr11 63184460 63184605 + 3 NA intron (NM_199352, intron 4 of 8) intron (NM_199352, intron 4 of 8) -40311 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 430-102 chr16 7057271 7057475 + 3 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -275472 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 489-88 chr15 49555513 49555721 + 3 NA intron (NM_001330293, intron 8 of 10) L1PA13|LINE|L1 65201 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 458-282 chrX 99538205 99538503 + 3 NA Intergenic L1M3d|LINE|L1 871919 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 399-241 chr5 24686018 24686206 + 3 NA Intergenic L1MA2|LINE|L1 -41134 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 404-27 chr10 23707008 23707237 + 3 NA intron (NM_001098500, intron 1 of 18) L2b|LINE|L2 12395 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 565-67 chr19 29316143 29316446 + 3 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -103143 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 605-34 chr16 35754002 35754215 + 3 NA intron (NR_033985, intron 2 of 2) 5S|rRNA|rRNA 7556 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 298-498 chr9 71138703 71138891 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -17176 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 508-186 chr5 46190345 46190726 + 3 NA Intergenic ALR/Alpha|Satellite|centr -494155 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1191-3 chr3 83342556 83343319 + 3 NA Intergenic Intergenic 1356795 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 467-235 chr5 141419806 141419979 + 3 NA exon (NM_032101, exon 1 of 1) exon (NM_032101, exon 1 of 1) -1159 NM_032091 56105 Hs.368160 NM_018914 ENSG00000253873 PCDHGA11 PCDH-GAMMA-A11 protocadherin gamma subfamily A, 11 protein-coding 527-163 chr22 38856163 38856571 + 3 NA Intergenic L1MB3|LINE|L1 -12339 NM_014293 23467 Hs.91622 NM_014293 ENSG00000221890 NPTXR NPR neuronal pentraxin receptor protein-coding 531-233 chr7 139949200 139949519 + 3 NA intron (NM_001366537, intron 4 of 11) intron (NM_001366537, intron 4 of 11) 114362 NR_130117 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 802-55 chr5 102611046 102611413 + 3 NA intron (NR_103756, intron 1 of 1) intron (NR_103756, intron 1 of 1) 29861 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 381-61 chr10 99146342 99146478 + 3 NA intron (NM_021828, intron 2 of 11) intron (NM_021828, intron 2 of 11) 89465 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 485-297 chr8 124943842 124944084 + 3 NA non-coding (NR_027321, exon 2 of 4) non-coding (NR_027321, exon 2 of 4) 1955 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 559-143 chr4 187511934 187512219 + 3 NA Intergenic Intergenic -6463 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 424-139 chr2 126091958 126092214 + 3 NA Intergenic AluJr4|SINE|Alu 25899 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 584-50 chr16 51009633 51009828 + 3 NA intron (NR_039672, intron 2 of 6) MIR|SINE|MIR -8028 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 304-487 chr7 47666696 47666813 + 3 NA Intergenic Intergenic 11510 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 559-139 chr4 124071697 124072033 + 3 NA Intergenic L1MB2|LINE|L1 297601 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 538-215 chr6 159960837 159961155 + 3 NA Intergenic Intergenic -8103 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 734-45 chr3 27710806 27711252 + 3 NA Intergenic L1MC5|LINE|L1 11294 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 518-225 chr5 15766561 15766826 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -151691 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 381-324 chr5 178708480 178708636 + 3 NA Intergenic Intergenic 22101 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 314-565 chr8 71174868 71175082 + 3 NA Intergenic Intergenic 181731 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 470-215 chr5 60438189 60438475 + 3 NA intron (NM_001364599, intron 1 of 16) L2a|LINE|L2 -49381 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 318-49 chr1 247978999 247979218 + 3 NA intron (NM_001304535, intron 1 of 1) intron (NM_001304535, intron 1 of 1) -11159 NR_002145 26247 Hs.684887 NR_002145 ENSG00000224227 OR2L1P HSHTPCRX02|HTPCRX02|OR2L1|OR2L7P olfactory receptor family 2 subfamily L member 1 pseudogene pseudo 421-274 chr7 19908400 19908601 + 3 NA Intergenic L1MA3|LINE|L1 -134883 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 770-68 chr7 13685858 13686168 + 3 NA Intergenic Intergenic 300501 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 404-131 chr17 71256162 71256445 + 3 NA Intergenic Intergenic -54124 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 436-101 chr16 51920453 51920659 + 3 NA Intergenic Intergenic 153379 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 462-286 chr8 104802022 104802305 + 3 NA Intergenic Intergenic -213139 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 492-214 chr5 117223655 117223969 + 3 NA Intergenic Intergenic -191700 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 522-99 chr16 65484855 65485101 + 3 NA intron (NR_027755, intron 2 of 8) L4_C_Mam|LINE|RTE-X 91322 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 329-90 chr11 23683583 23683818 + 3 NA Intergenic Intergenic -264510 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 638-100 chr4 32036138 32036492 + 3 NA intron (NR_125936, intron 1 of 2) MER31A|LTR|ERV1 -13893 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 284-226 chr2 229181987 229182161 + 3 NA intron (NM_001100818, intron 1 of 2) L1MC1|LINE|L1 50018 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 405-12 chr1 169064247 169064397 + 3 NA intron (NR_104091, intron 1 of 4) L1MDa|LINE|L1 22683 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 359-138 chr14 44235182 44235415 + 3 NA Intergenic Intergenic 271985 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 393-257 chr4 186494121 186494351 + 3 NA intron (NR_033901, intron 1 of 6) L1MCc|LINE|L1 6822 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 401-334 chr8 134468361 134468520 + 3 NA Intergenic L2a|LINE|L2 -129631 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 504-58 chr13 42085722 42085977 + 3 NA intron (NM_178009, intron 1 of 29) intron (NM_178009, intron 1 of 29) 37201 NM_152910 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 566-143 chr4 62768689 62768940 + 3 NA Intergenic Intergenic -607049 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 554-183 chr6 61526090 61526429 + 3 NA Intergenic Intergenic -47871 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 452-61 chr12 115064448 115064681 + 3 NA Intergenic MIRb|SINE|MIR -380389 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 583-151 chr7 63892992 63893363 + 3 NA Intergenic Intergenic -105629 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 649-103 chr7 35348133 35348513 + 3 NA intron (NR_038864, intron 1 of 2) intron (NR_038864, intron 1 of 2) 34468 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 1123-3 chr1 97691378 97692289 + 3 NA intron (NM_000110, intron 6 of 22) intron (NM_000110, intron 6 of 22) -105088 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 832 chr1 62584654 62585194 + 3 NA intron (NM_001272002, intron 15 of 15) L2c|LINE|L2 -12596 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 607-4 chr1 60559062 60559447 + 3 NA intron (NR_146508, intron 4 of 7) intron (NR_146508, intron 4 of 7) 63431 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 702-40 chr2 19498006 19498491 + 3 NA Intergenic L1MEc|LINE|L1 -139625 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 654-27 chr12 17706054 17706308 + 3 NA Intergenic L2a|LINE|L2 32882 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 527-246 chr7 54271350 54271809 + 3 NA Intergenic Intergenic -59118 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 349-262 chr2 101173595 101173811 + 3 NA Intergenic AluJo|SINE|Alu 22043 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 571-50 chr14 86640666 86641041 + 3 NA Intergenic Intergenic -264925 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 395-128 chr16 73458407 73458559 + 3 NA Intergenic AluSx1|SINE|Alu 71678 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 921-5 chr12 30602999 30603582 + 3 NA Intergenic L1PA16|LINE|L1 73954 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 534-60 chr12 33472344 33472766 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -32736 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 348-364 chr4 67287450 67287660 + 3 NA Intergenic L2a|LINE|L2 134445 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 541-156 chr3 78272154 78272378 + 3 NA Intergenic Intergenic -223303 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 238-334 chr6 121628157 121628256 + 3 NA Intergenic Intergenic 192560 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 340-349 chr3 2857365 2857497 + 3 NA intron (NM_175607, intron 7 of 24) intron (NM_175607, intron 7 of 24) -34784 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 477-147 chr2 36699430 36699795 + 3 NA intron (NM_001177969, intron 1 of 14) (ATAG)n|Simple_repeat|Simple_repeat 2905 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 878-20 chr16 50529700 50530137 + 3 NA Intergenic Intergenic -18478 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 521-23 chr10 15417171 15417381 + 3 NA Intergenic L1MEg|LINE|L1 -45987 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 489-61 chr12 112820816 112821110 + 3 NA intron (NM_001347955, intron 2 of 20) intron (NM_001347955, intron 2 of 20) 29215 NM_001347955 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 268-439 chr9 83111776 83111939 + 3 NA Intergenic Intergenic -48715 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 219-87 chr13 60431748 60431885 + 3 NA intron (NM_001146070, intron 1 of 13) intron (NM_001146070, intron 1 of 13) 34596 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 432-40 chr10 111214556 111214796 + 3 NA Intergenic L1MC4a|LINE|L1 100385 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 487-304 chr9 27964244 27964591 + 3 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -390551 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 549-10 chr1 117835165 117835481 + 3 NA Intergenic Intergenic 94298 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 452-198 chr4 130927266 130927449 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 550996 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 398-354 chr8 83650545 83650738 + 3 NA Intergenic MER70-int|LTR|ERVL 246883 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 309-111 chr12 61523695 61523873 + 3 NA Intergenic L2a|LINE|L2 669055 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 848-40 chr6 56184772 56185242 + 3 NA intron (NM_001318752, intron 1 of 28) L1MEc|LINE|L1 62573 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 582-160 chr8 127542573 127542926 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -60610 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 396-42 chr10 27477924 27478129 + 3 NA Intergenic Intergenic -26148 NM_001256412 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 487-148 chr2 114270251 114270550 + 3 NA Intergenic Intergenic -172241 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 224-289 chr6 160754139 160754271 + 3 NA TTS (NM_000301) TTS (NM_000301) 52012 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 448-37 chr10 68316108 68316362 + 3 NA intron (NM_001033083, intron 1 of 8) L1M4|LINE|L1 -15458 NM_001322438 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 451-23 chr1 238814555 238814848 + 3 NA Intergenic L1MEc|LINE|L1 -328684 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 432-131 chr2 86428655 86428922 + 3 NA Intergenic L1M2|LINE|L1 -12583 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 885-36 chrX 95531973 95532386 + 3 NA Intergenic L1M4a2|LINE|L1 -468953 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 726-10 chr10 126035390 126035862 + 3 NA intron (NM_003474, intron 21 of 22) intron (NM_003474, intron 21 of 22) -62353 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 487-117 chr18 12312541 12312783 + 3 NA intron (NM_001303525, intron 3 of 3) intron (NM_001303525, intron 3 of 3) 4421 NM_001303528 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 497-2 chr1 59609648 59609944 + 3 NA intron (NM_001350794, intron 9 of 14) intron (NM_001350794, intron 9 of 14) 94166 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 332-497 chr7 93107995 93108167 + 3 NA intron (NM_001193307, intron 1 of 1) L1ME3|LINE|L1 9898 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 488-145 chr2 143232790 143233023 + 3 NA intron (NM_018460, intron 5 of 13) L1ME3B|LINE|L1 103487 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 858-46 chr8 102216947 102217385 + 3 NA intron (NM_001172477, intron 6 of 8) L1ME4a|LINE|L1 21665 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 492-209 chr5 58240068 58240334 + 3 NA Intergenic Intergenic -117860 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 742-12 chr10 65743316 65743673 + 3 NA intron (NR_120647, intron 5 of 5) L1ME3E|LINE|L1 172069 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 1021-14 chr6 143917425 143917936 + 3 NA intron (NM_001013623, intron 6 of 7) Tigger4a|DNA|TcMar-Tigger 43730 NM_001317157 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 735-22 chr14 53480941 53481231 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 327732 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 500-137 chr2 102222984 102223221 + 3 NA intron (NM_001351447, intron 6 of 9) intron (NM_001351447, intron 6 of 9) 35788 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 514-83 chr14 47416007 47416247 + 3 NA intron (NM_001113498, intron 1 of 16) MLT1A0-int|LTR|ERVL-MaLR -72881 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 313-40 chr10 32153030 32153230 + 3 NA Intergenic L1MDa|LINE|L1 -96705 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 379-248 chr4 116790756 116790966 + 3 NA Intergenic Intergenic 294715 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 652-46 chr16 5302286 5302517 + 3 NA Intergenic L1ME2|LINE|L1 -204581 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 654-36 chr14 71851214 71851625 + 3 NA Intergenic Intergenic -80752 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 275-75 chr12 517156 517253 + 3 NA intron (NM_173593, intron 1 of 19) L2a|LINE|L2 57265 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 524-23 chr10 10205163 10205407 + 3 NA Intergenic Zaphod3|DNA|hAT-Tip100 146563 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 541-91 chr17 64151211 64151394 + 3 NA intron (NM_018469, intron 10 of 11) HAL1b|LINE|L1 4963 NR_002995 677842 Hs.405444 NR_002995 ENSG00000277887 SNORA50C ACA62|SNORA76|SNORA76C small nucleolar RNA, H/ACA box 50C snoRNA 811-7 chr11 42785877 42786416 + 3 NA Intergenic Intergenic 483223 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 414-25 chr10 55422531 55422839 + 3 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -176357 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 459-227 chr5 4480902 4481108 + 3 NA Intergenic Intergenic -292476 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 459-229 chr5 12933061 12933387 + 3 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 99662 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 784-27 chr2 13233160 13233764 + 3 NA Intergenic L1M5|LINE|L1 -226449 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 452-234 chr6 81077249 81077458 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 675328 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 577-3 chr1 49143837 49144029 + 3 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -113478 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 540-192 chr7 24436535 24436726 + 3 NA Intergenic Intergenic -136822 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 922-31 chr6 49650685 49651063 + 3 NA Intergenic Intergenic -14000 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 493-99 chr16 35975723 35975921 + 3 NA Intergenic ALR/Alpha|Satellite|centr 229270 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 403-103 chr14 70589047 70589280 + 3 NA intron (NM_001284210, intron 5 of 6) intron (NM_001284210, intron 5 of 6) 11527 NM_001284210 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 225-373 chr8 123787137 123787215 + 3 NA intron (NM_144963, intron 12 of 23) intron (NM_144963, intron 12 of 23) 18737 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 404-293 chr7 79881375 79881539 + 3 NA Intergenic Intergenic -253374 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 735-77 chr7 106620364 106620836 + 3 NA Intergenic Intergenic 40558 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 345-420 chr5 57664196 57664421 + 3 NA intron (NR_104668, intron 1 of 2) intron (NR_104668, intron 1 of 2) 13648 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 371-146 chr17 74034043 74034224 + 3 NA Intergenic Intergenic -169545 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 354-12 chr1 82321975 82322185 + 3 NA Intergenic Intergenic 519627 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 621-17 chr10 76617182 76617644 + 3 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat -270631 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 349-57 chr10 52582994 52583132 + 3 NA intron (NR_155748, intron 1 of 2) Tigger1|DNA|TcMar-Tigger -112530 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 792-38 chr3 21529384 21529893 + 3 NA intron (NM_024697, intron 3 of 7) intron (NM_024697, intron 3 of 7) -13151 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 468-150 chr2 107376442 107376686 + 3 NA Intergenic L1MC3|LINE|L1 -27039 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 1016-6 chr18 21144240 21144751 + 3 NA Intergenic Intergenic -32682 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 588-149 chr7 88934003 88934324 + 3 NA intron (NM_181646, intron 1 of 3) L1PB2|LINE|L1 -138426 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 658-52 chr16 65447975 65448273 + 3 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 128176 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 511-125 chr2 108444854 108445130 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -4214 NM_181453 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 629-119 chr7 61911361 61911656 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1392548 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 271-93 chr12 32586003 32586169 + 3 NA intron (NM_001370298, intron 4 of 16) intron (NM_001370298, intron 4 of 16) 51793 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 324-266 chr2 84037081 84037192 + 3 NA Intergenic Intergenic -253546 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 701-80 chr5 157122628 157123024 + 3 NA Intergenic L1M2c|LINE|L1 -13782 NM_032782 84868 Hs.710500 NM_032782 ENSG00000135077 HAVCR2 CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3 hepatitis A virus cellular receptor 2 protein-coding 580-128 chr4 237207 237467 + 3 NA intron (NR_027481, intron 1 of 1) L1M4c|LINE|L1 24737 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 882-2 chr1 99489022 99489443 + 3 NA Intergenic Intergenic -1428 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 440-29 chr10 108173653 108173834 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -104450 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 705-61 chr20 52516510 52516902 + 3 NA Intergenic MER113|DNA|hAT-Charlie -104132 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 379-161 chr2 83250283 83250515 + 3 NA Intergenic L1MB7|LINE|L1 -272415 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 341-24 chr1 98425565 98425700 + 3 NA Intergenic L3|LINE|CR1 214921 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 252-26 chr1 213894478 213894626 + 3 NA intron (NR_037850, intron 4 of 5) MIR|SINE|MIR -30197 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 368-44 chr10 26541227 26541357 + 3 NA intron (NM_019043, intron 10 of 14) L1MA5A|LINE|L1 38015 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 953-27 chr7 10334716 10335291 + 3 NA Intergenic Intergenic -367673 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 1807 chr10 31558584 31559804 + 3 NA Intergenic AluSx1|SINE|Alu -159439 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 715-36 chr2 63241061 63241368 + 3 NA intron (NR_148705, intron 13 of 16) intron (NR_148705, intron 13 of 16) -121672 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 466-277 chr8 128413807 128414016 + 3 NA intron (NR_121672, intron 6 of 7) intron (NR_121672, intron 6 of 7) 150768 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 473-112 chr18 22484840 22485104 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -67057 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 689-99 chr8 125864501 125864809 + 3 NA Intergenic L1MA9|LINE|L1 86542 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 180-115 chr4 59416406 59416509 + 3 NA Intergenic Intergenic 402884 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 407-265 chr5 165029551 165029728 + 3 NA Intergenic Intergenic 559360 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 676-85 chr3 98356469 98356981 + 3 NA Intergenic Intergenic 2871 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 655-16 chr10 57788749 57789065 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 478987 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 539-8 chr1 87646970 87647197 + 3 NA Intergenic Intergenic -275428 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 562-2 chr1 31611345 31611590 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -6233 NM_001525 3061 Hs.388226 NM_001525 ENSG00000121764 HCRTR1 OX1R hypocretin receptor 1 protein-coding 597-26 chr10 90464179 90464568 + 3 NA intron (NR_110657, intron 2 of 6) intron (NR_110657, intron 2 of 6) 76432 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 613-108 chr5 89831921 89832289 + 3 NA Intergenic Intergenic 184615 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 485-275 chr7 125756795 125757005 + 3 NA Intergenic L1MA7|LINE|L1 -492609 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 461-128 chr2 63405712 63406019 + 3 NA intron (NR_148704, intron 10 of 18) L1MC4a|LINE|L1 32142 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 439-98 chr15 59464049 59464344 + 3 NA intron (NM_152450, intron 3 of 8) L1MA5A|LINE|L1 26010 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 1112-8 chr3 2481324 2481988 + 3 NA intron (NM_175607, intron 3 of 24) THE1C|LTR|ERVL-MaLR 242827 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 396-251 chr4 45209954 45210269 + 3 NA Intergenic Intergenic -483477 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 955-10 chr19 52367112 52367646 + 3 NA TTS (NM_001161426) TTS (NM_001161426) -2544 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 237-185 chr2 108428576 108428707 + 3 NA Intergenic L1MC4|LINE|L1 -20565 NM_181453 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 386-33 chr10 44543536 44543699 + 3 NA Intergenic L1PA16|LINE|L1 -158520 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 427-168 chr3 159116907 159117175 + 3 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 47722 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 502-80 chr13 104312610 104312785 + 3 NA Intergenic HAL1ME|LINE|L1 887497 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 828-55 chr9 116402889 116403247 + 3 NA TTS (NM_002581) TTS (NM_002581) -2462 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 810-8 chr11 106559114 106559494 + 3 NA Intergenic L2a|LINE|L2 307897 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 398-59 chr11 73006839 73007025 + 3 NA intron (NM_014824, intron 4 of 19) MIRb|SINE|MIR 135386 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 478-160 chr20 6498456 6498656 + 3 NA intron (NR_109953, intron 3 of 3) intron (NR_109953, intron 3 of 3) 71824 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 559-84 chr19 29156627 29156910 + 3 NA Intergenic L1MEd|LINE|L1 56383 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 402-31 chr10 53219733 53219894 + 3 NA Intergenic Intergenic -448113 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 286-177 chr19 27620876 27621011 + 3 NA Intergenic ALR/Alpha|Satellite|centr -172488 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 500-138 chr2 103480673 103480926 + 3 NA Intergenic MER41B|LTR|ERV1 -496370 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 494-27 chr10 77139789 77139995 + 3 NA promoter-TSS (NR_120654) promoter-TSS (NR_120654) -939 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 425-103 chr16 48342409 48342614 + 3 NA intron (NM_031490, intron 12 of 14) intron (NM_031490, intron 12 of 14) 23376 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 576-129 chr5 15899249 15899587 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -35764 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 463-23 chr1 166358687 166358932 + 3 NA Intergenic Intergenic 131230 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 390-243 chr3 84490180 84490489 + 3 NA Intergenic L1M1|LINE|L1 379241 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 1048-15 chr20 61869655 61870125 + 3 NA intron (NM_001252339, intron 5 of 14) intron (NM_001252339, intron 5 of 14) 83772 NR_031658 100302168 NR_031658 ENSG00000284193 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 514-286 chr8 109715841 109716112 + 3 NA Intergenic L1MB4|LINE|L1 -24185 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 436-6 chr1 70841537 70841698 + 3 NA Intergenic Intergenic 135164 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 337-343 chr3 31609337 31609465 + 3 NA intron (NM_178862, intron 5 of 15) intron (NM_178862, intron 5 of 15) 76476 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 567-211 chrX 64949226 64949564 + 3 NA intron (NM_001178032, intron 1 of 4) MER57-int|LTR|ERV1 27055 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 435-185 chr5 16132921 16133092 + 3 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 46785 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 161-79 chr4 171087264 171087344 + 3 NA Intergenic AluJr4|SINE|Alu 46702 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 581-138 chr5 63479515 63479732 + 3 NA Intergenic L1M4|LINE|L1 482669 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 267-266 chr3 130659578 130659777 + 3 NA intron (NM_001102608, intron 33 of 35) MIR|SINE|MIR 87152 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 277-131 chr16 7692932 7693094 + 3 NA intron (NM_145892, intron 11 of 12) intron (NM_145892, intron 11 of 12) 360168 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 434-112 chr17 72650520 72650692 + 3 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -10134 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 760-3 chr1 70901333 70901710 + 3 NA intron (NR_028293, intron 2 of 4) intron (NR_028293, intron 2 of 4) -144985 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 864-48 chr8 77528742 77529227 + 3 NA Intergenic Intergenic 78287 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 427-57 chr12 93827612 93827856 + 3 NA intron (NM_001320100, intron 2 of 2) L1ME1|LINE|L1 -89911 NR_110093 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 601-83 chr2 221991305 221991669 + 3 NA Intergenic Intergenic -306660 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 728-46 chr2 65148225 65148467 + 3 NA Intergenic AluJo|SINE|Alu -18045 NM_015543 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 394-209 chr3 18803106 18803255 + 3 NA Intergenic Intergenic -345330 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 749-47 chr19 30319752 30320133 + 3 NA Intergenic Intergenic -52442 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 319-102 chr11 124442404 124442537 + 3 NA Intergenic Intergenic -1385 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 459-85 chr14 80605874 80606117 + 3 NA intron (NM_152446, intron 19 of 24) (TTATT)n|Simple_repeat|Simple_repeat 335743 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 428-207 chr4 60396827 60397110 + 3 NA Intergenic Intergenic -525651 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 756-34 chr20 54552519 54552957 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 77145 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 532-136 chr2 188723811 188724005 + 3 NA Intergenic Intergenic 66215 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 677-22 chr12 40994776 40995224 + 3 NA intron (NM_001843, intron 17 of 23) MIRb|SINE|MIR 86643 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 477-32 chr10 24433013 24433172 + 3 NA exon (NM_001282767, exon 4 of 19) exon (NM_001282767, exon 4 of 19) -16322 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 736-15 chr11 93971257 93971649 + 3 NA Intergenic Intergenic -49901 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 345-282 chr2 126299922 126300060 + 3 NA Intergenic Intergenic -182006 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 348-248 chr2 209085942 209086131 + 3 NA Intergenic Intergenic -338011 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 209-283 chr6 147615538 147615662 + 3 NA Intergenic Intergenic 106910 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 406-77 chr14 53907333 53907582 + 3 NA Intergenic Intergenic 41027 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 624-61 chr2 74690270 74690521 + 3 NA Intergenic Intergenic 36148 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 680-111 chr7 50376979 50377328 + 3 NA intron (NM_001220771, intron 3 of 3) intron (NM_001220771, intron 3 of 3) 58105 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 378-342 chr5 87740525 87740686 + 3 NA Intergenic Intergenic 78563 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 862-5 chr10 59487952 59488430 + 3 NA Intergenic L3b|LINE|CR1 -125010 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 511-147 chr20 39963062 39963395 + 3 NA Intergenic Intergenic -41233 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 526-118 chr2 40780093 40780360 + 3 NA Intergenic L1MA9|LINE|L1 -267791 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 603-94 chr2 200160559 200160859 + 3 NA Intergenic MER50|LTR|ERV1 -145170 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 363-161 chr16 20518560 20518740 + 3 NA Intergenic MIRb|SINE|MIR 57717 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 672-99 chr7 26472459 26472886 + 3 NA intron (NR_148500, intron 2 of 5) L1ME4a|LINE|L1 66153 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 266-146 chr17 32364102 32364263 + 3 NA intron (NM_001032293, intron 7 of 10) intron (NM_001032293, intron 7 of 10) 14044 NM_003457 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 639-125 chrX 55824602 55824988 + 3 NA Intergenic L1MA2|LINE|L1 -83328 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 474-93 chr15 59486968 59487205 + 3 NA intron (NM_152450, intron 3 of 8) L1MA3|LINE|L1 48900 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 557-34 chr11 81350611 81350855 + 3 NA Intergenic Intergenic 540103 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 471-82 chr14 62262169 62262392 + 3 NA Intergenic MIRb|SINE|MIR -122307 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 530-9 chr1 82674729 82675026 + 3 NA Intergenic Intergenic -228306 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 576-183 chr9 104641025 104641369 + 3 NA Intergenic L1PA13|LINE|L1 -22993 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 1004-18 chr5 174261516 174262150 + 3 NA Intergenic Intergenic -74521 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 325-20 chr1 115248194 115248312 + 3 NA Intergenic HAL1M8|LINE|L1 -34781 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 598-114 chr5 131841423 131841727 + 3 NA intron (NM_001303622, intron 11 of 12) L1M1|LINE|L1 -44558 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 545-32 chr10 122805269 122805716 + 3 NA Intergenic MER102b|DNA|hAT-Charlie 40365 NM_022034 50624 Hs.647182 NM_022034 ENSG00000138161 CUZD1 ERG-1|ERG1|ITMAP1|UO-44 CUB and zona pellucida like domains 1 protein-coding 443-47 chr11 13084911 13085078 + 3 NA Intergenic Intergenic 75678 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 611-100 chr3 34919126 34919455 + 3 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 474733 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 322-531 chr8 89997809 89998056 + 3 NA Intergenic MamGypLTR1b|LTR|Gypsy -3420 NM_001330575 1666 Hs.492212 NM_001359 ENSG00000104325 DECR1 DECR|NADPH|SDR18C1 2,4-dienoyl-CoA reductase 1 protein-coding 745-59 chr6 45137036 45137491 + 3 NA intron (NM_001350325, intron 2 of 10) L1M4a2|LINE|L1 60507 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 658-128 chr8 134672464 134672923 + 3 NA intron (NM_020863, intron 1 of 15) L1MDa|LINE|L1 23862 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 227-153 chr19 39816299 39816483 + 3 NA Intergenic Intergenic 13411 NR_106777 102465974 NR_106777 ENSG00000277759 MIR6719 hsa-mir-6719 microRNA 6719 ncRNA 571-58 chr16 49432749 49433065 + 3 NA Intergenic Intergenic 59103 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 360-472 chr8 118239273 118239440 + 3 NA intron (NM_001101676, intron 4 of 4) L2a|LINE|L2 -127537 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 762-39 chr2 145927963 145928410 + 3 NA Intergenic Intergenic -658871 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 419-7 chr1 53405664 53405847 + 3 NA Intergenic Intergenic 34265 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 176-4 chr1 103295685 103295757 + 3 NA Intergenic Intergenic -187199 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 253-161 chr17 69224460 69224631 + 3 NA intron (NM_080282, intron 4 of 39) intron (NM_080282, intron 4 of 39) 10467 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 453-236 chr6 136882998 136883289 + 3 NA intron (NM_000288, intron 8 of 9) ORSL-2b|DNA|hAT-Tip100 -39158 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 291-201 chr2 3943779 3943975 + 3 NA Intergenic Intergenic 30155 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 305-532 chr8 66260391 66260510 + 3 NA Intergenic L1MA8|LINE|L1 68336 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 552-66 chr14 90434932 90435213 + 3 NA Intergenic Intergenic 20045 NR_146492 101930294 NR_146492 ENSG00000258678 LINC02317 - long intergenic non-protein coding RNA 2317 ncRNA 518-72 chr13 46237636 46237832 + 3 NA intron (NM_001282460, intron 5 of 9) L1M4|LINE|L1 25806 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 1450-4 chr5 57830272 57830900 + 3 NA Intergenic Intergenic 68576 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 558-92 chr2 27818296 27818632 + 3 NA intron (NM_022128, intron 7 of 7) intron (NM_022128, intron 7 of 7) 46745 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 585-27 chr12 13159198 13159552 + 3 NA Intergenic L1M5|LINE|L1 -37351 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 447-6 chr1 90785030 90785294 + 3 NA intron (NR_135038, intron 2 of 2) L2a|LINE|L2 50999 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 221-201 chr3 118660424 118660577 + 3 NA intron (NR_135547, intron 2 of 3) MSTB|LTR|ERVL-MaLR 18732 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 749-99 chr8 129937197 129937593 + 3 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 2416 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 269-311 chr5 43852743 43852897 + 3 NA Intergenic Intergenic -249590 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 803 chr1 47601446 47601817 + 3 NA Intergenic L1M7|LINE|L1 -164314 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 532-14 chr1 221896874 221897199 + 3 NA Intergenic L1ME1|LINE|L1 -56370 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 343-244 chr2 75305028 75305214 + 3 NA Intergenic Intergenic -105601 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 924-6 chr1 197420040 197420754 + 3 NA intron (NM_001193640, intron 3 of 9) intron (NM_001193640, intron 3 of 9) 152145 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 838-12 chr14 32804762 32805285 + 3 NA intron (NM_004274, intron 12 of 13) MER11A|LTR|ERVK -133856 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 725-24 chr14 94617597 94617955 + 3 NA intron (NM_001085, intron 2 of 4) intron (NM_001085, intron 2 of 4) 5385 NM_001085 12 Hs.534293 NM_001085 ENSG00000196136 SERPINA3 AACT|ACT|GIG24|GIG25 serpin family A member 3 protein-coding 547-189 chr5 106352410 106352669 + 3 NA Intergenic L1MC1|LINE|L1 658475 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 404-97 chr14 49314899 49315085 + 3 NA Intergenic Intergenic 271388 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 871-15 chr2 238676989 238677622 + 3 NA Intergenic L1MC5|LINE|L1 -121806 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 320-481 chr6 54110788 54110946 + 3 NA promoter-TSS (NM_001281747) promoter-TSS (NM_001281747) -576 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 385-217 chr20 56049367 56049589 + 3 NA Intergenic Intergenic -43959 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 473-74 chr14 28086234 28086414 + 3 NA Intergenic Intergenic -413103 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 395-311 chr7 46382461 46382778 + 3 NA Intergenic L1MCa|LINE|L1 314503 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 697-4 chr1 237617969 237618422 + 3 NA intron (NM_001035, intron 38 of 104) intron (NM_001035, intron 38 of 104) 147076 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 1334-3 chr6 161555204 161556235 + 3 NA intron (NM_004562, intron 8 of 11) L1MC5a|LINE|L1 84742 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 398-96 chr14 38392285 38392437 + 3 NA Intergenic Intergenic -136268 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 432-57 chr12 11599582 11599830 + 3 NA Intergenic Intergenic -50148 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 552-203 chr7 109857480 109857952 + 3 NA Intergenic L1MEd|LINE|L1 102497 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 460-38 chr10 79598162 79598315 + 3 NA Intergenic LOR1a|LTR|ERV1 -12701 NM_001164647 653509 Hs.535295 NM_005411 ENSG00000122852 SFTPA1 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 surfactant protein A1 protein-coding 526-19 chr10 25239878 25240185 + 3 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -63755 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 490-85 chr14 45596011 45596350 + 3 NA Intergenic Intergenic 119422 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 616-43 chr14 53706270 53706568 + 3 NA Intergenic MIRb|SINE|MIR 242065 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 380-289 chr4 142821067 142821278 + 3 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 25363 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 688-53 chr16 25302339 25302710 + 3 NA Intergenic Intergenic -44679 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 618-139 chr8 142843438 142843733 + 3 NA intron (NM_002066, intron 3 of 3) L1ME3A|LINE|L1 8784 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 645-100 chr5 117225921 117226169 + 3 NA Intergenic L1ME2z|LINE|L1 -189467 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 505-297 chr8 19282342 19282648 + 3 NA Intergenic L1PB3|LINE|L1 -31075 NR_156444 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 311-369 chr4 32498166 32498374 + 3 NA Intergenic Intergenic 147232 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 721-28 chr18 7717596 7717965 + 3 NA intron (NM_002845, intron 1 of 30) LTR1D|LTR|ERV1 150464 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 530-251 chr8 83933377 83933731 + 3 NA Intergenic Intergenic -249233 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 323-200 chr18 37931186 37931362 + 3 NA Intergenic Intergenic 274139 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 946-16 chr4 23656829 23657148 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 224304 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 232-265 chr4 58244640 58244746 + 3 NA Intergenic Intergenic 291635 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 398-135 chr17 8069605 8069760 + 3 NA Intergenic Intergenic 18034 NM_001139 242 Hs.136574 NM_001139 ENSG00000179477 ALOX12B 12R-LOX|ARCI2 arachidonate 12-lipoxygenase, 12R type protein-coding 1019-6 chr15 81243880 81244463 + 3 NA intron (NM_001352686, intron 2 of 18) L1MD1|LINE|L1 44695 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 373-279 chr4 31348536 31348762 + 3 NA Intergenic Intergenic -157895 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 492-243 chr7 86355041 86355310 + 3 NA Intergenic L1MC1|LINE|L1 -288734 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 251-28 chr10 21193485 21193578 + 3 NA Intergenic MamRep1879|DNA|hAT-Tip100? 19229 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 882-25 chr20 38185476 38185973 + 3 NA Intergenic L1MB8|LINE|L1 -19216 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 543-87 chr16 17763913 17764158 + 3 NA Intergenic L1ME3Cz|LINE|L1 -293075 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 296-368 chr5 52097311 52097537 + 3 NA Intergenic Intergenic 89393 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 578-181 chr8 123896669 123896957 + 3 NA intron (NM_001039112, intron 1 of 40) L2|LINE|L2 44826 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 454-109 chr15 95155960 95156300 + 3 NA Intergenic LTR84a|LTR|ERVL 170970 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 453-246 chr7 21013622 21013857 + 3 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 178308 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 381-143 chr17 66100736 66100934 + 3 NA intron (NM_001353129, intron 6 of 26) MER2|DNA|TcMar-Tigger 91057 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 590-46 chr14 54510620 54511029 + 3 NA intron (NM_006568, intron 1 of 5) intron (NM_006568, intron 1 of 5) 918 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 287-371 chr7 4272911 4273087 + 3 NA Intergenic Intergenic -138162 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 486-273 chr7 31205159 31205378 + 3 NA Intergenic L1MB5|LINE|L1 135458 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 929-35 chr8 117030513 117031251 + 3 NA intron (NM_001172813, intron 2 of 10) intron (NM_001172813, intron 2 of 10) 79907 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 668-40 chr17 69582229 69582656 + 3 NA Intergenic L1M5|LINE|L1 -11545 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 360-287 chr22 49257235 49257428 + 3 NA Intergenic Intergenic 286135 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 570-177 chr7 40249398 40249708 + 3 NA intron (NM_001193312, intron 7 of 12) intron (NM_001193312, intron 7 of 12) 114577 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 296-199 chr18 71086105 71086280 + 3 NA Intergenic Intergenic -435238 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 969-19 chr5 30211706 30212170 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 331378 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 268-396 chr8 58032713 58032870 + 3 NA intron (NM_147189, intron 2 of 4) intron (NM_147189, intron 2 of 4) 38268 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 419-10 chr1 60212144 60212365 + 3 NA Intergenic Intergenic -138484 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 436-279 chr7 27682452 27682634 + 3 NA Intergenic AluSx1|SINE|Alu -19660 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 695-58 chr20 35323314 35323801 + 3 NA intron (NM_001184977, intron 5 of 7) intron (NM_001184977, intron 5 of 7) -31132 NM_178468 128876 Hs.592149 NM_178468 ENSG00000125998 FAM83C C20orf128|dJ614O4.7 family with sequence similarity 83 member C protein-coding 604-29 chr11 43294597 43294859 + 3 NA Intergenic L1MA4A|LINE|L1 -17268 NM_001243747 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 615-68 chr2 154674098 154674381 + 3 NA Intergenic Intergenic -24342 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 616-55 chr16 62944970 62945311 + 3 NA Intergenic Intergenic -908702 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 619-32 chr12 18735417 18735747 + 3 NA intron (NM_001330774, intron 3 of 14) L1MA10|LINE|L1 1927 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 1228-3 chr16 2803623 2804341 + 3 NA intron (NM_001354586, intron 5 of 6) L1M4|LINE|L1 -7450 NR_145775 109616997 NR_145775 ENSG00000221719 SNORA3C - small nucleolar RNA, H/ACA box 3C snoRNA 240-99 chr12 16648541 16648643 + 3 NA Intergenic L1MC2|LINE|L1 -40378 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 717-84 chr8 126675340 126675763 + 3 NA Intergenic L1ME3Cz|LINE|L1 -117073 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 513-162 chr20 45160835 45161198 + 3 NA Intergenic L1M3de|LINE|L1 -13886 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 529-70 chr14 72283504 72283757 + 3 NA intron (NM_001370288, intron 2 of 16) THE1B|LTR|ERVL-MaLR -233190 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 260-33 chr1 239959859 239960051 + 3 NA Intergenic L1MEc|LINE|L1 -47569 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 686-18 chr12 10735789 10736118 + 3 NA Intergenic Intergenic -12630 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 421-183 chr3 35962732 35962913 + 3 NA Intergenic MIRc|SINE|MIR 218346 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 584-102 chr3 63366992 63367197 + 3 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) -76218 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 802-10 chr11 11056886 11057340 + 3 NA Intergenic Intergenic 198896 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 329-547 chr7 104346893 104347107 + 3 NA intron (NM_199000, intron 1 of 2) MIR|SINE|MIR 18344 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 403-41 chr11 4777328 4777565 + 3 NA Intergenic Intergenic -7508 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 485-144 chr2 128645267 128645502 + 3 NA Intergenic MER4A1|LTR|ERV1 -219216 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 438-190 chr4 34380201 34380368 + 3 NA Intergenic Intergenic -110537 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 830-26 chr2 151075693 151076132 + 3 NA Intergenic L1MA8|LINE|L1 185951 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 725-9 chr10 78355708 78356158 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 88591 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 458-126 chr2 44735899 44736088 + 3 NA intron (NM_024766, intron 7 of 10) L1MEc|LINE|L1 202895 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 1128-8 chr2 16157480 16157951 + 3 NA Intergenic Intergenic 107288 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 548-130 chr2 228492063 228492261 + 3 NA intron (NR_151716, intron 2 of 3) intron (NR_151716, intron 2 of 3) 119233 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 621-106 chr6 11572455 11572822 + 3 NA intron (NM_001100829, intron 2 of 2) L1ME3G|LINE|L1 34889 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 394-84 chr12 55758129 55758338 + 3 NA TTS (NM_005811) TTS (NM_005811) 15111 NM_005811 10220 Hs.600883 NM_005811 ENSG00000135414 GDF11 BMP-11|BMP11 growth differentiation factor 11 protein-coding 540-174 chr5 57556861 57557128 + 3 NA Intergenic Intergenic -13348 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 468-23 chr10 28016447 28016728 + 3 NA Intergenic Intergenic -17508 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 548-37 chr11 80498893 80499220 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 263747 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 730-23 chr19 13450671 13451051 + 3 NA intron (NM_023035, intron 3 of 46) AluJr|SINE|Alu 55599 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 547-173 chr5 5993643 5994015 + 3 NA Intergenic L1PA15|LINE|L1 343463 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 449-252 chr7 28200045 28200230 + 3 NA intron (NR_034097, intron 2 of 3) intron (NR_034097, intron 2 of 3) -19342 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 572-144 chr5 93651412 93651667 + 3 NA intron (NM_032042, intron 10 of 10) L1M4a1|LINE|L1 -30751 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 564-197 chr8 27740116 27740423 + 3 NA intron (NR_130761, intron 6 of 6) intron (NR_130761, intron 6 of 6) 32371 NR_156432 55246 Hs.445512 NM_018246 ENSG00000147419 CCDC25 - coiled-coil domain containing 25 protein-coding 569-170 chr7 85796682 85796921 + 3 NA Intergenic L1MA3|LINE|L1 375679 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 588-94 chr3 28099244 28099533 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -142231 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 397-28 chr10 43486555 43486727 + 3 NA Intergenic L1M2|LINE|L1 49530 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 676-51 chr19 37245029 37245412 + 3 NA 3' UTR (NM_001345947, exon 5 of 5) 3' UTR (NM_001345947, exon 5 of 5) -6665 NR_110719 101927667 Hs.633102 NR_110718 ENSG00000226686 LINC01535 - long intergenic non-protein coding RNA 1535 ncRNA 363-327 chr4 61805635 61805792 + 3 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 356052 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 624-51 chr17 51865028 51865368 + 3 NA intron (NM_001082533, intron 4 of 9) L2a|LINE|L2 293516 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 347-218 chr2 63398125 63398313 + 3 NA intron (NR_148704, intron 11 of 18) L2|LINE|L2 39788 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 262-156 chr16 49655916 49656081 + 3 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) 8326 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 553-110 chr2 48893938 48894261 + 3 NA Intergenic Intergenic -138375 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 777-53 chr5 67078950 67079285 + 3 NA intron (NM_001297651, intron 2 of 25) L1ME4b|LINE|L1 74462 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 378-396 chr7 35475891 35476042 + 3 NA Intergenic L1M4|LINE|L1 162111 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 313-571 chrX 58443012 58443166 + 3 NA Intergenic ALR/Alpha|Satellite|centr -532456 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 443-244 chr5 63147415 63147708 + 3 NA Intergenic L1ME3A|LINE|L1 568742 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 1102-15 chr6 70790775 70791379 + 3 NA intron (NM_021940, intron 4 of 9) intron (NM_021940, intron 4 of 9) 122547 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 766-37 chr2 145994928 145995245 + 3 NA Intergenic L1M4b|LINE|L1 -591971 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 728-50 chr2 128337499 128337842 + 3 NA Intergenic L1ME2|LINE|L1 -18802 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 546-82 chr16 14176507 14176725 + 3 NA intron (NM_001308142, intron 3 of 16) intron (NM_001308142, intron 3 of 16) -10070 NM_001365413 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 459-203 chr4 27430269 27430497 + 3 NA Intergenic L1MEd|LINE|L1 212904 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 567-8 chr1 115986480 115986743 + 3 NA intron (NM_018420, intron 1 of 11) intron (NM_018420, intron 1 of 11) -9335 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 399-236 chr4 129294827 129295010 + 3 NA Intergenic L2a|LINE|L2 198766 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 415-137 chr2 132679733 132679958 + 3 NA intron (NM_207481, intron 17 of 17) intron (NM_207481, intron 17 of 17) -8319 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 851-37 chr5 155090990 155091381 + 3 NA Intergenic Intergenic 77430 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 454-137 chr2 11934378 11934612 + 3 NA Intergenic AluSz|SINE|Alu -72621 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 295-488 chr9 9755660 9755800 + 3 NA intron (NM_002839, intron 6 of 45) intron (NM_002839, intron 6 of 45) -43662 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 576-188 chrX 73572646 73572898 + 3 NA intron (NM_001300884, intron 1 of 4) L1PA16|LINE|L1 9624 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 259-160 chr17 60749156 60749295 + 3 NA intron (NM_001330413, intron 6 of 25) HAL1|LINE|L1 71374 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 167-107 chr7 71570935 71571007 + 3 NA intron (NM_022479, intron 5 of 10) AluSp|SINE|Alu -263201 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 451-166 chr4 116580916 116581111 + 3 NA Intergenic Intergenic 281288 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 560-158 chr6 162523918 162524123 + 3 NA intron (NM_004562, intron 1 of 11) MIRb|SINE|MIR -203112 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 384-7 chr1 64682725 64682902 + 3 NA intron (NM_020925, intron 26 of 26) intron (NM_020925, intron 26 of 26) -62160 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 521-233 chr7 52859803 52860057 + 3 NA Intergenic Intergenic -175703 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 324-574 chr9 122772207 122772334 + 3 NA Intergenic L1M4c|LINE|L1 -16663 NM_001001923 392391 Hs.534761 NM_001001923 ENSG00000148215 OR5C1 OR5C2P|OR9-31|OR9-F olfactory receptor family 5 subfamily C member 1 protein-coding 1059-9 chr17 62707514 62708146 + 3 NA intron (NR_147886, intron 2 of 2) L2c|LINE|L2 1624 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 493-233 chr5 6271885 6272063 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR 65318 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 432-122 chr2 41678720 41678990 + 3 NA Intergenic L1MA5|LINE|L1 -198700 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 752-52 chr3 119213307 119213830 + 3 NA intron (NM_003778, intron 7 of 7) L1ME3D|LINE|L1 -12918 NR_046574 100874201 Hs.721307 NR_046574 ENSG00000240254 B4GALT4-AS1 - B4GALT4 antisense RNA 1 ncRNA 575-18 chr10 43241277 43241592 + 3 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -11695 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 465-145 chr2 193617485 193617764 + 3 NA Intergenic Intergenic -726645 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 529-107 chr2 106298869 106299266 + 3 NA Intergenic Intergenic -70678 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 373-148 chr16 76738878 76739043 + 3 NA Intergenic L1MB4|LINE|L1 103962 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 373-428 chr8 139985082 139985310 + 3 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 115339 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 184-73 chr17 78106545 78106647 + 3 NA TTS (NR_040071) TTS (NR_040071) 5203 NR_040071 100131096 Hs.635442 NR_040071 ENSG00000204282 TNRC6C-AS1 TMC6|lnc TNRC6C antisense RNA 1 ncRNA 166-4 chr1 217006033 217006098 + 3 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) -66392 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 272-55 chr10 80564348 80564492 + 3 NA intron (NM_001145719, intron 1 of 6) L2|LINE|L2 23601 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 384-127 chr15 95222569 95222775 + 3 NA Intergenic L1MA8|LINE|L1 104428 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 344-153 chr15 57078777 57078976 + 3 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -140554 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 258-165 chr18 5369914 5370043 + 3 NA Intergenic MER3|DNA|hAT-Charlie -72925 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 413-224 chr4 100831200 100831420 + 3 NA Intergenic Intergenic -156197 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 362-308 chr4 73242729 73242961 + 3 NA intron (NM_032217, intron 1 of 33) intron (NM_032217, intron 1 of 33) 15953 NM_198889 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 462-118 chr18 65833535 65833829 + 3 NA intron (NM_001362438, intron 6 of 11) intron (NM_001362438, intron 6 of 11) 82670 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 393-258 chr5 2508237 2508464 + 3 NA Intergenic Intergenic -196149 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 363-39 chr10 16036136 16036319 + 3 NA Intergenic L1MDa|LINE|L1 -175694 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 586-163 chr9 17389077 17389406 + 3 NA intron (NM_001365029, intron 14 of 25) intron (NM_001365029, intron 14 of 25) -189825 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 390-341 chr6 163341053 163341240 + 3 NA non-coding (NR_033862, exon 3 of 4) non-coding (NR_033862, exon 3 of 4) 5887 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 566-15 chr10 85144606 85144927 + 3 NA Intergenic Intergenic 54139 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 551-146 chr5 13363957 13364206 + 3 NA Intergenic MLT2B2|LTR|ERVL -331195 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 279-176 chr2 65726505 65726679 + 3 NA Intergenic Intergenic -293993 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 453-208 chr5 84370712 84370914 + 3 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 14054 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 747-62 chr7 44362392 44362852 + 3 NA Intergenic L1MD2|LINE|L1 -36991 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 820-22 chr17 73962834 73963438 + 3 NA Intergenic L1ME2z|LINE|L1 -134599 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 401-29 chr10 52289411 52289562 + 3 NA intron (NM_001098512, intron 16 of 17) intron (NM_001098512, intron 16 of 17) 24642 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 778-18 chr11 118812694 118813100 + 3 NA Intergenic Tigger15a|DNA|TcMar-Tigger -21733 NM_004397 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 911-32 chrX 49617569 49617927 + 3 NA Intergenic MER104|DNA|TcMar-Tc2 18735 NM_001040663 2543 Hs.278606 NM_001468 ENSG00000205777 GAGE1 CT4.1|CT4.4|GAGE-1|GAGE-4|GAGE4 G antigen 1 protein-coding 434-250 chr6 94482439 94482654 + 3 NA Intergenic Intergenic 764243 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 742-79 chr8 115137883 115138248 + 3 NA Intergenic L1PA13|LINE|L1 529948 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 444-250 chr8 20988405 20988658 + 3 NA intron (NR_033894, intron 3 of 4) L1MD1|LINE|L1 14545 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 277-145 chr16 83677943 83678117 + 3 NA intron (NM_001220489, intron 8 of 12) Arthur1C|DNA|hAT-Tip100 125946 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 432-274 chr7 63022414 63022582 + 3 NA Intergenic Intergenic 281558 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 518-229 chr5 46055200 46055496 + 3 NA Intergenic ALR/Alpha|Satellite|centr -358968 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 493-37 chr10 81999922 82000235 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 122391 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 1064-2 chr11 20947592 20948078 + 3 NA intron (NM_201551, intron 11 of 18) intron (NM_201551, intron 11 of 18) 278249 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 541-39 chr11 131183512 131183710 + 3 NA Intergenic Intergenic -187004 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 271-485 chr9 106047465 106047581 + 3 NA Intergenic L1M6|LINE|L1 352982 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 426-190 chr3 161886413 161886638 + 3 NA Intergenic Intergenic 389717 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 754-33 chr18 2387199 2387706 + 3 NA Intergenic L1ME1|LINE|L1 184053 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 592-8 chr1 211868090 211868485 + 3 NA Intergenic L1MC1|LINE|L1 37326 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 919-5 chr12 34658523 34658988 + 3 NA Intergenic ALR/Alpha|Satellite|centr 636259 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 320-193 chr16 63127945 63128093 + 3 NA Intergenic L1MD|LINE|L1 -1091581 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 498-236 chr6 115077281 115077497 + 3 NA Intergenic Intergenic 566446 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 463-132 chr2 19780996 19781255 + 3 NA Intergenic Intergenic -87729 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 626-155 chrX 63516519 63517052 + 3 NA intron (NR_152613, intron 1 of 3) intron (NR_152613, intron 1 of 3) 44310 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 1077-18 chr9 84748767 84749278 + 3 NA intron (NM_001018064, intron 11 of 17) AluSp|SINE|Alu 43121 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 769-70 chr9 96752086 96752484 + 3 NA Intergenic L1MB5|LINE|L1 25802 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 553-62 chr14 47559033 47559245 + 3 NA intron (NM_001113498, intron 1 of 16) L1PA15|LINE|L1 115815 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 471-112 chr18 44065325 44065613 + 3 NA Intergenic Intergenic 466228 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 660-37 chr19 28781390 28781828 + 3 NA Intergenic L1PA15-16|LINE|L1 -53915 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 436-138 chr2 116501925 116502178 + 3 NA Intergenic Intergenic 1158236 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 373-151 chr16 85903366 85903542 + 3 NA intron (NM_001363907, intron 2 of 8) (CTCTT)n|Simple_repeat|Simple_repeat 439 NM_001363908 3394 Hs.137427 NM_002163 ENSG00000140968 IRF8 H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8 interferon regulatory factor 8 protein-coding 497-95 chr17 73587291 73587516 + 3 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 57042 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 704-83 chr8 43846558 43846943 + 3 NA Intergenic ALR/Alpha|Satellite|centr 554308 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 417-261 chr7 36632046 36632318 + 3 NA intron (NM_001177507, intron 4 of 19) intron (NM_001177507, intron 4 of 19) -32062 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 485-25 chr10 29207137 29207301 + 3 NA Intergenic AluJo|SINE|Alu -81851 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 745-23 chr19 29177431 29177860 + 3 NA Intergenic L1MA2|LINE|L1 35506 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 717-43 chr2 110215291 110215741 + 3 NA intron (NM_001355251, intron 6 of 8) L2c|LINE|L2 -10503 NM_000272 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 1007-13 chr5 9298192 9298698 + 3 NA intron (NM_003966, intron 5 of 22) MLT1C|LTR|ERVL-MaLR -212888 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 1053-13 chr2 80745289 80745842 + 3 NA Intergenic Intergenic 432186 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 438-107 chr2 11037118 11037337 + 3 NA Intergenic L1PB3|LINE|L1 94949 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 543-218 chr6 63224265 63224556 + 3 NA Intergenic L2c|LINE|L2 95567 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 837-30 chr3 182140767 182141163 + 3 NA Intergenic MIRc|SINE|MIR 188601 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 551-96 chr2 133010926 133011149 + 3 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 95480 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 286-71 chr11 71316567 71316766 + 3 NA Intergenic L1MCa|LINE|L1 -91870 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 345-419 chr5 55728938 55729069 + 3 NA Intergenic L1MC4|LINE|L1 -9014 NM_001142549 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 336-361 chr3 31339369 31339632 + 3 NA Intergenic L1M5|LINE|L1 -177713 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 428-289 chr8 54609419 54609578 + 3 NA Intergenic Intergenic -6598 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 587-123 chr4 96265849 96266107 + 3 NA Intergenic Intergenic -44725 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 679-114 chr9 2311415 2311904 + 3 NA Intergenic L1MA2|LINE|L1 153203 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 628-135 chr8 132601935 132602259 + 3 NA intron (NR_135913, intron 9 of 10) L1MEg|LINE|L1 -40618 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 650-27 chr14 52156048 52156511 + 3 NA Intergenic Intergenic -87220 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 550-26 chr10 33538023 33538237 + 3 NA Intergenic Intergenic -203225 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 491-251 chr7 98695524 98695787 + 3 NA Intergenic Intergenic 78370 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 541-189 chr5 118830534 118830776 + 3 NA Intergenic Intergenic -143931 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 540-147 chr3 105196339 105196584 + 3 NA Intergenic Intergenic -170252 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 429-80 chr13 55298868 55299086 + 3 NA Intergenic Intergenic 124523 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 404-206 chr3 5635889 5636070 + 3 NA Intergenic MIR|SINE|MIR -385724 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 385-230 chr22 48935374 48935576 + 3 NA Intergenic L1MB8|LINE|L1 68705 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 802-47 chr4 4975850 4976409 + 3 NA intron (NR_125893, intron 2 of 2) L1MB3|LINE|L1 43329 NM_018659 54360 Hs.13872 NM_018659 ENSG00000170891 CYTL1 C17|C4orf4 cytokine like 1 protein-coding 724-63 chr5 3794982 3795379 + 3 NA Intergenic (GTGG)n|Simple_repeat|Simple_repeat 199348 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 433-149 chr20 8208311 8208599 + 3 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) -40249 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 389-127 chr16 83190851 83191150 + 3 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -200702 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 1220-3 chr2 49016867 49017439 + 3 NA intron (NM_000145, intron 4 of 9) intron (NM_000145, intron 4 of 9) -42450 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 453-27 chr10 79008284 79008567 + 3 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 59023 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 456-46 chr11 50599103 50599342 + 3 NA Intergenic ALR/Alpha|Satellite|centr 190075 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 759-6 chr1 176506161 176506463 + 3 NA intron (NM_021936, intron 1 of 4) L1PA16|LINE|L1 43137 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 677-31 chr15 25255184 25255600 + 3 NA intron (NR_146177, intron 139 of 147) L1MCa|LINE|L1 4533 NR_003359 100033818 NR_003359 ENSG00000202261 SNORD115-44 HBII-52-44 small nucleolar RNA, C/D box 115-44 snoRNA 640-75 chr21 32107404 32107724 + 3 NA Intergenic L1ME1|LINE|L1 -21269 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 435-103 chr17 53058748 53058967 + 3 NA Intergenic L1MA4|LINE|L1 73352 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 1122-6 chr15 62216038 62216676 + 3 NA Intergenic AluY|SINE|Alu -13039 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 495-268 chr8 142308891 142309123 + 3 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 94175 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 748-25 chr12 11583820 11584275 + 3 NA Intergenic Intergenic 36017 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 755-38 chr2 123900422 123900881 + 3 NA Intergenic L1MA4|LINE|L1 124523 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 443-95 chr14 64436674 64436890 + 3 NA intron (NM_005956, intron 16 of 27) intron (NM_005956, intron 16 of 27) -28717 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 747-53 chr5 39324838 39325173 + 3 NA intron (NM_001737, intron 5 of 10) intron (NM_001737, intron 5 of 10) 39490 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 264-242 chr20 47186892 47187018 + 3 NA intron (NM_172110, intron 13 of 13) FRAM|SINE|Alu 19988 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 327-385 chr5 9650157 9650393 + 3 NA intron (NR_027112, intron 11 of 12) intron (NR_027112, intron 11 of 12) -19924 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 623-50 chr18 51878345 51878865 + 3 NA Intergenic Intergenic -461592 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 304-99 chr12 9153671 9153868 + 3 NA intron (NM_002864, intron 29 of 35) intron (NM_002864, intron 29 of 35) -37540 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 303-246 chr20 21385479 21385640 + 3 NA intron (NM_001317960, intron 28 of 29) intron (NM_001317960, intron 28 of 29) 11967 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 593-55 chr16 83423669 83424026 + 3 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -84499 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 527-40 chr10 131154382 131154715 + 3 NA intron (NM_174937, intron 6 of 11) intron (NM_174937, intron 6 of 11) 59330 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 445-72 chr14 78517147 78517369 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 113539 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 623-89 chr4 10371388 10371900 + 3 NA Intergenic Intergenic 85782 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 557-216 chr9 29087409 29087771 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 124709 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 1352-4 chr19 44482594 44483344 + 3 NA intron (NM_001278508, intron 2 of 3) intron (NM_001278508, intron 2 of 3) 17553 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 481-312 chr9 1367545 1367783 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 316177 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 742-44 chr20 77266 77559 + 3 NA Intergenic L1M1|LINE|L1 -10260 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 468-130 chr19 31871572 31871804 + 3 NA Intergenic L1ME4a|LINE|L1 -154174 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 866-19 chr16 7707442 7707909 + 3 NA intron (NM_145893, intron 12 of 13) LTR16A1|LTR|ERVL 374830 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 366-125 chr14 53555630 53555771 + 3 NA Intergenic Intergenic 392784 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 445-188 chr4 31296999 31297255 + 3 NA Intergenic L1MB7|LINE|L1 125983 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 503-154 chr2 121798899 121799112 + 3 NA Intergenic MIRb|SINE|MIR 43354 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 486-169 chr20 21605958 21606309 + 3 NA intron (NR_109880, intron 1 of 3) HAL1ME|LINE|L1 36109 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 569-107 chr2 222010535 222010772 + 3 NA Intergenic Intergenic -287494 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 532-100 chr18 37646000 37646360 + 3 NA Intergenic Intergenic -10955 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 450-260 chr6 67324220 67324534 + 3 NA Intergenic Intergenic -730974 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 493-163 chr2 136270643 136270862 + 3 NA Intergenic L1MA10|LINE|L1 -152597 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 939-24 chr7 4416191 4416716 + 3 NA Intergenic Intergenic -265842 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 326-123 chr12 19085816 19086005 + 3 NA Intergenic Intergenic -43823 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 727-23 chr12 61421071 61421518 + 3 NA Intergenic Intergenic 771545 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 665-16 chr10 106639026 106639472 + 3 NA intron (NM_001206569, intron 18 of 25) intron (NM_001206569, intron 18 of 25) 499084 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 555-6 chr1 164011355 164011706 + 3 NA Intergenic L1MB1|LINE|L1 -547830 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 649-78 chr4 22865783 22866003 + 3 NA Intergenic Intergenic 151804 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 426-220 chr5 7011936 7012162 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -184128 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 726-88 chrX 84696341 84696684 + 3 NA Intergenic Intergenic -194059 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 539-68 chr14 59406580 59406867 + 3 NA Intergenic Intergenic 58657 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 422-191 chr3 94753110 94753281 + 3 NA Intergenic (TT)n|Simple_repeat|Simple_repeat -185068 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 241-136 chr16 74671519 74671654 + 3 NA TTS (NM_152649) TTS (NM_152649) -4709 NM_001370535 55159 Hs.567525 NM_018124 ENSG00000168411 RFWD3 FANCW|RNF201 ring finger and WD repeat domain 3 protein-coding 478-78 chr14 56153983 56154214 + 3 NA intron (NM_021255, intron 1 of 5) L1ME4a|LINE|L1 35687 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 508-71 chr16 11224238 11224449 + 3 NA Intergenic Intergenic 31839 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 318-320 chr20 42444277 42444402 + 3 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -241144 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 343-591 chrX 58017633 58017809 + 3 NA Intergenic L1PREC2|LINE|L1 -107088 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 657-38 chr17 41639991 41640259 + 3 NA promoter-TSS (NR_033415) promoter-TSS (NR_033415) 74 NR_033415 284116 Hs.725790 NR_033415 ENSG00000214514 KRT42P - keratin 42 pseudogene pseudo 289-388 chr5 123335759 123335933 + 3 NA Intergenic Intergenic 87746 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 988-17 chr2 156988076 156988467 + 3 NA Intergenic Intergenic -269434 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 416-13 chr1 161972789 161972966 + 3 NA Intergenic Intergenic 51588 NM_015441 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 676-45 chr18 535040 535439 + 3 NA Intergenic AluJb|SINE|Alu -19945 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 500-129 chr2 61626947 61627154 + 3 NA Intergenic L2c|LINE|L2 -88694 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 358-313 chr3 153158269 153158455 + 3 NA Intergenic L2c|LINE|L2 -3864 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 468-332 chr8 142422749 142422979 + 3 NA Intergenic L1ME1|LINE|L1 -19682 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 408-111 chr15 24604986 24605180 + 3 NA Intergenic LTR47B2|LTR|ERVL 46926 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 478-231 chr5 25149662 25149830 + 3 NA intron (NR_147006, intron 3 of 4) intron (NR_147006, intron 3 of 4) 40910 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 344-378 chr5 31221853 31222014 + 3 NA intron (NM_001362435, intron 1 of 10) MIRb|SINE|MIR 28247 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 759-56 chr4 179392769 179393216 + 3 NA Intergenic LTR16|LTR|ERVL -1485056 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 370-235 chr2 80133739 80133936 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 170915 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 399-36 chr10 59494887 59495126 + 3 NA Intergenic L1MA5|LINE|L1 -131825 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 303-180 chr19 6292755 6292939 + 3 NA Intergenic MER52-int|LTR|ERV1 -12872 NM_005934 4298 Hs.10095 NM_005934 ENSG00000130382 MLLT1 ENL|LTG19|YEATS1 MLLT1 super elongation complex subunit protein-coding 605-108 chr7 22769362 22769623 + 3 NA Intergenic L1MA9|LINE|L1 -41872 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 432-244 chr6 49556261 49556523 + 3 NA intron (NR_146864, intron 4 of 4) intron (NR_146864, intron 4 of 4) 5724 NR_146859 135398 Hs.722010 NM_153344 ENSG00000197261 C6orf141 - chromosome 6 open reading frame 141 protein-coding 750-45 chr22 34960597 34961018 + 3 NA intron (NR_138042, intron 1 of 4) L1ME3Cz|LINE|L1 37109 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 578-159 chr7 64971646 64971986 + 3 NA TTS (NM_015852) TTS (NM_015852) 19220 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 597-84 chr21 16962184 16962437 + 3 NA Intergenic L1M2a|LINE|L1 372073 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 241-184 chr2 60177243 60177437 + 3 NA Intergenic MLT2B3|LTR|ERVL 205696 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 518-291 chr8 26833677 26833850 + 3 NA intron (NM_001322504, intron 1 of 1) intron (NM_001322504, intron 1 of 1) 31892 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 637-40 chr14 61849206 61849536 + 3 NA intron (NM_001367656, intron 1 of 7) L1MA2|LINE|L1 36668 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 373-5 chr1 23947054 23947246 + 3 NA Intergenic L1MB3|LINE|L1 -12678 NM_017761 55629 Hs.7862 NM_017761 ENSG00000189266 PNRC2 - proline rich nuclear receptor coactivator 2 protein-coding 645-20 chr12 37744768 37745116 + 3 NA Intergenic ALR/Alpha|Satellite|centr -571832 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 713-21 chr13 83034668 83035030 + 3 NA Intergenic L1MA10|LINE|L1 847544 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 559-89 chr2 22739426 22739787 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 203127 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 477-204 chr3 88330640 88330922 + 3 NA Intergenic Intergenic -7675 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 724-37 chr2 118923710 118924170 + 3 NA Intergenic Tigger4|DNA|TcMar-Tigger -18229 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 336-427 chr4 109692217 109692406 + 3 NA intron (NM_001226, intron 5 of 6) MIR|SINE|MIR 11134 NM_032992 839 Hs.654616 NM_001226 ENSG00000138794 CASP6 MCH2 caspase 6 protein-coding 522-92 chr15 76255458 76255828 + 3 NA intron (NM_000126, intron 9 of 11) Charlie1|DNA|hAT-Charlie 4509 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 602-81 chr22 34266248 34266671 + 3 NA Intergenic L1ME3A|LINE|L1 -343571 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 527-161 chr21 45518344 45518657 + 3 NA intron (NM_001352510, intron 5 of 5) L1MD1|LINE|L1 16256 NM_001205207 6573 Hs.84190 NM_003056 ENSG00000173638 SLC19A1 CHMD|FOLT|IFC-1|IFC1|REFC|RFC|RFC1 solute carrier family 19 member 1 protein-coding 844-3 chr1 104413480 104413825 + 3 NA Intergenic Intergenic 340629 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 369-249 chr21 20955963 20956141 + 3 NA Intergenic Intergenic -42357 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 726-8 chr10 35653998 35654464 + 3 NA Intergenic Intergenic -12797 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 870-17 chr2 125939303 125939905 + 3 NA Intergenic L1ME2|LINE|L1 178381 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 537-20 chr1 226729768 226730009 + 3 NA intron (NM_002221, intron 2 of 7) AluSx|SINE|Alu 9287 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 335-360 chr3 116211797 116211981 + 3 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -148135 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 390-305 chr5 144737114 144737255 + 3 NA Intergenic L1PA16|LINE|L1 531793 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 700-79 chr5 24913807 24914111 + 3 NA Intergenic Intergenic -73376 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 465-162 chr21 24005290 24005528 + 3 NA Intergenic Intergenic 315968 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 500-94 chr15 45966824 45967090 + 3 NA Intergenic LTR33A|LTR|ERVL 261762 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 623-22 chr11 48592464 48592903 + 3 NA Intergenic L1MEc|LINE|L1 103890 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 940-6 chr14 62620665 62621194 + 3 NA Intergenic Intergenic 424529 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 510-198 chr4 438637 438909 + 3 NA intron (NR_002451, intron 2 of 2) intron (NR_002451, intron 2 of 2) 35436 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 451-247 chr8 141150459 141150651 + 3 NA intron (NM_001362798, intron 5 of 21) intron (NM_001362798, intron 5 of 21) 21966 NM_001352890 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 580-4 chr1 115390402 115390623 + 3 NA Intergenic ERVL-int|LTR|ERVL -52276 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 580-196 chr8 82947324 82947536 + 3 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 35326 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 396-54 chr10 67587916 67588125 + 3 NA intron (NM_001127384, intron 3 of 17) L1PA3|LINE|L1 77640 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 884-6 chr12 37976889 37977424 + 3 NA Intergenic ALR/Alpha|Satellite|centr -339618 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 692-20 chr12 16132695 16133188 + 3 NA Intergenic MIR|SINE|MIR 144744 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 707-83 chr5 93001977 93002485 + 3 NA Intergenic Intergenic 569112 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 375-215 chr2 113692259 113692471 + 3 NA Intergenic L1M4a1|LINE|L1 29003 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 849-32 chr4 126748317 126748701 + 3 NA Intergenic L1MB8|LINE|L1 -884448 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 662-46 chr2 113018114 113018349 + 3 NA Intergenic Intergenic 12772 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 462-102 chr16 62757296 62757547 + 3 NA Intergenic Intergenic -720983 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 912-21 chr2 31024758 31025204 + 3 NA intron (NM_024572, intron 1 of 14) MIR3|SINE|MIR 104659 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 412-320 chr8 16618917 16619074 + 3 NA Intergenic L1MCc|LINE|L1 383350 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 392-167 chr2 224134808 224135029 + 3 NA Intergenic Intergenic -95599 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 461-121 chr2 24975328 24975545 + 3 NA intron (NR_034113, intron 1 of 2) L1MC4a|LINE|L1 3324 NR_034113 729723 Hs.436366 NR_034113 ENSG00000224165 DNAJC27-AS1 - DNAJC27 antisense RNA 1 ncRNA 501-119 chr2 184717007 184717333 + 3 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 118641 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 435-22 chr1 221692261 221692613 + 3 NA Intergenic Intergenic 44463 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 435-180 chr5 6987199 6987411 + 3 NA Intergenic L1PREC2|LINE|L1 -159384 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 476-272 chr8 115427486 115427760 + 3 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 240390 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 738-3 chr1 162732154 162732505 + 3 NA intron (NM_006182, intron 3 of 17) intron (NM_006182, intron 3 of 17) -58373 NM_016371 51478 Hs.492925 NM_016371 ENSG00000132196 HSD17B7 PRAP|SDR37C1 hydroxysteroid 17-beta dehydrogenase 7 protein-coding 546-131 chr21 29913877 29914131 + 3 NA intron (NM_000830, intron 1 of 16) MLT1L|LTR|ERVL-MaLR 25992 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 505-315 chr8 126305282 126305572 + 3 NA Intergenic L1MEc|LINE|L1 -20068 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 528-143 chr20 8910203 8910536 + 3 NA Intergenic Intergenic 79184 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 813-23 chr2 212739418 212739813 + 3 NA Intergenic Intergenic -55716 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 408-223 chr4 12937716 12937906 + 3 NA Intergenic L2|LINE|L2 546529 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 665-105 chr8 70433220 70433500 + 3 NA Intergenic Intergenic -29143 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 344-364 chr4 117735640 117735797 + 3 NA Intergenic MIR3|SINE|MIR -98683 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 237-359 chr7 84882297 84882395 + 3 NA Intergenic MER53|DNA|hAT 239585 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 480-86 chr14 83830173 83830510 + 3 NA Intergenic Intergenic 1187709 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 599-23 chr11 78893993 78894201 + 3 NA intron (NM_001098816, intron 7 of 33) intron (NM_001098816, intron 7 of 33) -319233 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 319-370 chr4 60019615 60019793 + 3 NA Intergenic Intergenic -902915 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 700-8 chr10 44307528 44307959 + 3 NA Intergenic MER74A|LTR|ERVL 14993 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 380-104 chr12 130548832 130548991 + 3 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 79545 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 913-18 chr2 79336236 79336796 + 3 NA Intergenic Intergenic 164328 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 390-44 chr10 106450780 106450935 + 3 NA Intergenic Intergenic 310692 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 695-82 chr5 79721747 79722061 + 3 NA intron (NM_153610, intron 1 of 12) L1MEg|LINE|L1 32068 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 825-38 chr4 98024227 98024693 + 3 NA intron (NM_174952, intron 5 of 10) Charlie25|DNA|hAT-Charlie 119016 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 434-289 chr8 108956401 108956608 + 3 NA Intergenic Intergenic -130124 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 427-195 chr4 159849508 159849776 + 3 NA Intergenic Intergenic -71858 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 525-240 chr7 54131776 54132113 + 3 NA Intergenic Intergenic -198753 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 436-296 chr8 53181382 53181530 + 3 NA Intergenic L1ME1|LINE|L1 70181 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 401-125 chr17 31424926 31425120 + 3 NA intron (NM_032932, intron 1 of 14) intron (NM_032932, intron 1 of 14) 33348 NM_032932 84440 Hs.406788 NM_032932 ENSG00000131242 RAB11FIP4 FIP4-Rab11|RAB11-FIP4 RAB11 family interacting protein 4 protein-coding 485-196 chr4 13050598 13050818 + 3 NA Intergenic Intergenic 433632 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 310-256 chr2 123615937 123616130 + 3 NA Intergenic L1MA2|LINE|L1 409141 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 861-21 chr3 96126832 96127404 + 3 NA Intergenic Intergenic -232846 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 437-19 chr10 27448953 27449132 + 3 NA Intergenic Intergenic -34674 NM_001034842 374308 Hs.631832 NM_001034842 ENSG00000182077 PTCHD3 PTR patched domain containing 3 protein-coding 479-242 chr8 65794021 65794257 + 3 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) -5082 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 551-81 chr2 8204146 8204443 + 3 NA intron (NR_034135, intron 7 of 8) L2b|LINE|L2 124125 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 896-17 chr2 52640151 52640520 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 62280 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 386-50 chr11 38799471 38799623 + 3 NA Intergenic Intergenic 150689 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 404-142 chr18 37110443 37110616 + 3 NA intron (NR_136303, intron 8 of 13) intron (NR_136303, intron 8 of 13) -163931 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 550-80 chr15 60779700 60779915 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 98238 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 154-82 chr4 119635077 119635167 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -6318 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 619-101 chr5 39405419 39405768 + 3 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 19387 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 481-323 chrX 73023769 73023937 + 3 NA Intergenic L1MA7|LINE|L1 20340 NM_001042506 645974 Hs.567854 NM_001042506 ENSG00000184388 PABPC1L2B RBM32B poly(A) binding protein cytoplasmic 1 like 2B protein-coding 690-45 chr15 100480929 100481404 + 3 NA intron (NM_001290341, intron 7 of 13) MIRc|SINE|MIR 63120 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 639-117 chr8 113980142 113980442 + 3 NA Intergenic L1PA16|LINE|L1 -543353 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 278-306 chr4 36572821 36572992 + 3 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 68994 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 346-114 chr13 33890970 33891165 + 3 NA intron (NM_181558, intron 8 of 8) intron (NM_181558, intron 8 of 8) 72918 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 435-179 chr5 2218488 2218644 + 3 NA Intergenic Intergenic 93635 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 367-277 chr3 34317353 34317554 + 3 NA Intergenic LTR52|LTR|ERVL 518823 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 512-215 chr5 52591244 52591605 + 3 NA Intergenic Intergenic -196492 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 793-33 chr3 96100028 96100476 + 3 NA Intergenic Intergenic -259712 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 437-146 chr2 145656285 145656510 + 3 NA Intergenic Intergenic -930660 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 968-17 chr3 194794741 194795342 + 3 NA Intergenic AluY|SINE|Alu -26332 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 595-127 chr5 15320464 15320795 + 3 NA Intergenic Intergenic -54069 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 420-199 chr4 62335072 62335248 + 3 NA Intergenic L1PB1|LINE|L1 -173395 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1573 chr11 41757315 41758194 + 3 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 43186 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 520-143 chr2 66205854 66206181 + 3 NA Intergenic Intergenic 152311 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 367-319 chr4 30460997 30461233 + 3 NA Intergenic LTR52-int|LTR|ERVL -259254 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 343-495 chr7 8453509 8453673 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 19982 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 659-3 chr1 162660439 162660692 + 3 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 28101 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 576-97 chr20 7245253 7245657 + 3 NA intron (NR_110609, intron 2 of 7) MLT1F2|LTR|ERVL-MaLR 8747 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 287-195 chr2 67636723 67636831 + 3 NA Intergenic Intergenic 188785 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 660-69 chr4 20649337 20649781 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -46723 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 1106-5 chr16 73678349 73678829 + 3 NA Intergenic Intergenic 291784 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 453-91 chr17 69098138 69098395 + 3 NA intron (NM_080284, intron 22 of 38) L1MB2|LINE|L1 -1276 NR_049834 100847008 NR_049834 ENSG00000265331 MIR4524B - microRNA 4524b ncRNA 158 chr1 4458316 4458383 + 3 NA Intergenic L1ME4a|LINE|L1 46298 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 466-27 chr10 36512228 36512438 + 3 NA Intergenic Intergenic -613524 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 618-109 chr6 74036225 74036514 + 3 NA Intergenic L2|LINE|L2 -33082 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 880-40 chr6 125712294 125712729 + 3 NA intron (NR_038906, intron 3 of 3) L1MEc|LINE|L1 -37121 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 565-180 chr8 62465519 62465764 + 3 NA intron (NM_001304533, intron 1 of 6) L2c|LINE|L2 216787 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 540-144 chr3 85090048 85090243 + 3 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -27881 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 477-72 chr12 14022472 14022768 + 3 NA Intergenic (CTTTTTT)n|Simple_repeat|Simple_repeat -42264 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 921-13 chr2 193160880 193161480 + 3 NA Intergenic Intergenic 411335 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 385-5 chr1 106157731 106157894 + 3 NA Intergenic (AGAGAC)n|Simple_repeat|Simple_repeat -129559 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 516-101 chr17 28046265 28046640 + 3 NA intron (NM_016231, intron 1 of 10) intron (NM_016231, intron 1 of 10) 3775 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 348-308 chr3 97739432 97739600 + 3 NA intron (NM_001080448, intron 16 of 17) intron (NM_001080448, intron 16 of 17) -25005 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 486-80 chr14 62686407 62686625 + 3 NA Intergenic L1MD2|LINE|L1 358942 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 638-23 chr11 21014795 21015182 + 3 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 345402 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 643-123 chr8 34462078 34462487 + 3 NA Intergenic Intergenic -321639 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 719-4 chr1 118483944 118484349 + 3 NA Intergenic Intergenic -298918 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 506-53 chr11 38882325 38882570 + 3 NA Intergenic Intergenic 233589 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 422-8 chr1 71482412 71482616 + 3 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 354498 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 616-115 chr4 22111500 22111771 + 3 NA Intergenic L1ME1|LINE|L1 -162884 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 588-102 chr3 110600302 110600696 + 3 NA Intergenic Intergenic 469460 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 716-65 chr5 63002793 63003245 + 3 NA Intergenic L1MA8|LINE|L1 424200 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 674-75 chr5 29553279 29553641 + 3 NA Intergenic L1MA5|LINE|L1 -157484 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 505-8 chr1 86657164 86657391 + 3 NA intron (NR_135837, intron 4 of 4) L1PA15|LINE|L1 23001 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 187-11 chr1 87070758 87070826 + 3 NA intron (NM_012262, intron 1 of 6) intron (NM_012262, intron 1 of 6) -58973 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 568-108 chr2 86662522 86662970 + 3 NA intron (NM_001198954, intron 2 of 7) L1M5|LINE|L1 -38869 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 526-176 chr3 139828456 139828701 + 3 NA Intergenic MIRb|SINE|MIR -106607 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 349-212 chr18 3888402 3888550 + 3 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 3123 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 1074-3 chr10 39105922 39106471 + 3 NA Intergenic ALR/Alpha|Satellite|centr 409600 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 242-241 chr3 102905222 102905375 + 3 NA Intergenic Intergenic 470283 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 755-67 chr8 4930264 4930762 + 3 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 64401 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 523-262 chr8 52911670 52911999 + 3 NA Intergenic Intergenic -28074 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 594-132 chr7 4534363 4534622 + 3 NA Intergenic AluSq2|SINE|Alu -147803 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 661-61 chr3 4582666 4583028 + 3 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 89499 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 529-228 chr8 144973528 144973906 + 3 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -21148 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 483-293 chrX 73647867 73648238 + 3 NA intron (NM_001300884, intron 3 of 4) L1PA8A|LINE|L1 84904 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 445-289 chrUn_GL000216v2 60913 61154 + 3 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 543-261 chr9 32629890 32630258 + 3 NA 3' UTR (NM_153809, exon 1 of 1) 3' UTR (NM_153809, exon 1 of 1) 5595 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 487-218 chr4 133701207 133701525 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 500423 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 451-37 chr11 80478402 80478605 + 3 NA Intergenic Intergenic 284300 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 760-49 chr3 140671010 140671477 + 3 NA Intergenic L1MB7|LINE|L1 -6821 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 895-19 chr2 82490481 82490986 + 3 NA Intergenic Intergenic -366070 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 662-14 chr10 130267041 130267383 + 3 NA Intergenic Intergenic 130803 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 696-81 chr4 61563459 61563753 + 3 NA intron (NM_001371343, intron 4 of 23) Tigger1|DNA|TcMar-Tigger 361434 NM_001371342 790-36 chr4 35024327 35024929 + 3 NA Intergenic Intergenic -754881 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 648-99 chr3 191923129 191923502 + 3 NA Intergenic L1PBa|LINE|L1 -315315 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 673-70 chr21 20652289 20652613 + 3 NA Intergenic Intergenic 150657 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 539-75 chr14 86845512 86845750 + 3 NA Intergenic Intergenic -60147 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 689-68 chr4 43420684 43421107 + 3 NA Intergenic Intergenic 71648 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 365-312 chr5 25209141 25209305 + 3 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 18270 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 806-54 chrX 77750395 77750822 + 3 NA intron (NM_000489, intron 1 of 34) L1PA8|LINE|L1 35608 NM_138270 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 390-97 chr14 59314673 59314850 + 3 NA intron (NM_001270520, intron 3 of 24) intron (NM_001270520, intron 3 of 24) 51320 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 712-71 chr5 22540227 22540554 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 312954 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 502-65 chr12 34553951 34554224 + 3 NA Intergenic ALR/Alpha|Satellite|centr 531591 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 414-54 chr11 114548465 114548694 + 3 NA intron (NM_152315, intron 2 of 5) L1M5|LINE|L1 11302 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 314-165 chr14 46930271 46930530 + 3 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -278619 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 530-51 chr12 4906239 4906521 + 3 NA Intergenic LTR16D|LTR|ERVL -3525 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 643-20 chr12 4831123 4831506 + 3 NA intron (NM_002235, intron 1 of 1) intron (NM_002235, intron 1 of 1) 22138 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 332-255 chr2 103793282 103793473 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 614955 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 588-127 chr5 117715328 117715580 + 3 NA Intergenic Intergenic -14907 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 369-281 chr4 30354853 30355015 + 3 NA Intergenic (ATA)n|Simple_repeat|Simple_repeat -365435 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 461-265 chr8 83396142 83396332 + 3 NA Intergenic Intergenic -7521 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 367-125 chr14 70509338 70509518 + 3 NA Intergenic L1M2|LINE|L1 25576 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 474-226 chr5 23978167 23978336 + 3 NA intron (NR_131245, intron 3 of 4) HERVIP10B3-int|LTR|ERV1 26903 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 464-57 chr14 43437081 43437281 + 3 NA Intergenic Intergenic 1070102 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 821-18 chr16 13657795 13658203 + 3 NA Intergenic L1ME3Cz|LINE|L1 -262158 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 422-104 chr15 98220909 98221104 + 3 NA Intergenic Intergenic 110552 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 1026-16 chr3 30233136 30233772 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie -285414 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 559-144 chr5 29407541 29407778 + 3 NA Intergenic L1MA6|LINE|L1 -11683 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 740-19 chr11 92619337 92619793 + 3 NA intron (NM_001008781, intron 2 of 24) L1M4|LINE|L1 267469 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 654-132 chr9 103200447 103200802 + 3 NA intron (NR_121578, intron 7 of 9) intron (NR_121578, intron 7 of 9) 124409 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 803-28 chr2 198973117 198973824 + 3 NA Intergenic L1PBa|LINE|L1 484469 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 465-148 chr2 223509940 223510158 + 3 NA Intergenic Intergenic 92312 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 535-32 chr10 112241160 112241352 + 3 NA Intergenic L1MA3|LINE|L1 -42144 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 608-147 chr7 62782400 62782725 + 3 NA Intergenic ALR/Alpha|Satellite|centr 521494 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 708-13 chr11 57198266 57198669 + 3 NA Intergenic Intergenic 16514 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 321-109 chr11 106167229 106167484 + 3 NA Intergenic LTR8B|LTR|ERV1 -35240 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 587-134 chr5 61984450 61984773 + 3 NA Intergenic Intergenic -248913 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 454-71 chr12 39286716 39287008 + 3 NA Intergenic Intergenic 156258 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 529-243 chrX 86359194 86359433 + 3 NA intron (NM_001139515, intron 1 of 11) intron (NM_001139515, intron 1 of 11) 96345 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 186-13 chr1 241567828 241567938 + 3 NA intron (NM_003679, intron 9 of 14) intron (NM_003679, intron 9 of 14) 35505 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 489-40 chr11 15675607 15675884 + 3 NA intron (NM_001293172, intron 1 of 2) L1ME1|LINE|L1 31860 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 389-165 chr2 49521115 49521387 + 3 NA Intergenic L2|LINE|L2 -366724 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 437-53 chr12 73997944 73998122 + 3 NA Intergenic MER91B|DNA|hAT-Tip100 294598 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 523-169 chr3 1759572 1759797 + 3 NA Intergenic L1PA16|LINE|L1 -339119 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 527-131 chr2 78578644 78578842 + 3 NA Intergenic Intergenic 33212 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 429-226 chr5 21036399 21036650 + 3 NA Intergenic Intergenic -420989 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 612-131 chr7 53190113 53190467 + 3 NA Intergenic L1PA12|LINE|L1 154657 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 917-18 chr4 60276445 60276963 + 3 NA Intergenic L1MA9|LINE|L1 -645915 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 468-151 chr2 107407185 107407394 + 3 NA Intergenic Intergenic -57764 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 803-15 chr15 101585330 101585790 + 3 NA Intergenic L1MD1|LINE|L1 28779 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 342-383 chr5 19220212 19220376 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 665978 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 369-370 chr6 153740416 153740661 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -269958 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 363-306 chr3 178683653 178683862 + 3 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 124907 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 632-103 chr6 63013969 63014299 + 3 NA Intergenic LTR16D1|LTR|ERVL 305843 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 748-23 chr11 94357973 94358423 + 3 NA Intergenic Intergenic 43221 NM_016540 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 641-13 chr10 76344220 76344452 + 3 NA intron (NM_001305581, intron 6 of 6) L1MC4|LINE|L1 -543708 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 809-54 chr8 105030388 105030889 + 3 NA Intergenic Intergenic -287800 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 292-204 chr2 30668319 30668484 + 3 NA Intergenic L1MCc|LINE|L1 139045 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 562-176 chr5 52303392 52303727 + 3 NA Intergenic Intergenic 295528 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 542-98 chr2 71753564 71753873 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 287019 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 911-13 chr2 145203497 145203875 + 3 NA Intergenic Intergenic 535719 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 417-135 chr2 70740059 70740299 + 3 NA intron (NM_017482, intron 1 of 12) L1M6|LINE|L1 27536 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 276-41 chr10 4756394 4756555 + 3 NA Intergenic L1MC1|LINE|L1 -69703 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 199-243 chr8 121403945 121404049 + 3 NA Intergenic Intergenic -235349 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 786-69 chr8 138713125 138713592 + 3 NA intron (NM_152888, intron 30 of 64) MIR|SINE|MIR 200683 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 412-174 chr2 163365243 163365501 + 3 NA Intergenic L1MC1|LINE|L1 370636 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 218-59 chr11 103586257 103586350 + 3 NA Intergenic MIR|SINE|MIR -263603 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 372-266 chr2 186577057 186577198 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -12929 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 460-13 chr1 166026245 166026449 + 3 NA Intergenic MIRc|SINE|MIR 118426 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 711-46 chr3 18314446 18314914 + 3 NA Intergenic L1MA2|LINE|L1 110659 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 473-64 chr12 110149584 110149744 + 3 NA intron (NM_031473, intron 10 of 11) LTR1A2|LTR|ERV1 25307 NR_144951 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19 intraflagellar transport 81 protein-coding 737-17 chr12 40361542 40361935 + 3 NA intron (NM_198578, intron 47 of 50) intron (NM_198578, intron 47 of 50) -31656 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 363-205 chr2 37079049 37079217 + 3 NA exon (NM_019024, exon 3 of 36) exon (NM_019024, exon 3 of 36) 5239 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 313-186 chr16 70317410 70317599 + 3 NA exon (NM_001363938, exon 5 of 12) exon (NM_001363938, exon 5 of 12) 18451 NM_001257175 11269 Hs.221761 NM_007242 ENSG00000157349 DDX19B DBP5|DDX19|RNAh DEAD-box helicase 19B protein-coding 546-32 chr11 6101606 6101841 + 3 NA Intergenic Intergenic -5961 NM_001005181 196335 Hs.632154 NM_001005181 ENSG00000180919 OR56B4 OR11-67 olfactory receptor family 56 subfamily B member 4 protein-coding 565-105 chr21 23741592 23741880 + 3 NA Intergenic (TTTAA)n|Simple_repeat|Simple_repeat -356901 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 407-199 chr3 89492659 89492843 + 3 NA Intergenic L1MDa|LINE|L1 385130 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 521-152 chr22 25192964 25193245 + 3 NA 3' UTR (NM_001145206, exon 11 of 11) 3' UTR (NM_001145206, exon 11 of 11) -6754 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 463-301 chr9 18534378 18534666 + 3 NA intron (NM_052866, intron 3 of 12) intron (NM_052866, intron 3 of 12) -38784 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 395-328 chr8 25021627 25021867 + 3 NA Intergenic Intergenic -64878 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 205-148 chr2 133450829 133450957 + 3 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 117570 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 380-322 chr5 155796274 155796456 + 3 NA Intergenic L1MEg|LINE|L1 -530392 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 621-119 chr7 81815908 81816242 + 3 NA Intergenic Intergenic -46028 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 465-33 chr10 85675970 85676262 + 3 NA intron (NM_017551, intron 12 of 15) intron (NM_017551, intron 12 of 15) 98385 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 664-69 chr22 49219423 49219828 + 3 NA Intergenic L1MCa|LINE|L1 323841 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 516-261 chr8 137345698 137345895 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 67792 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 686-62 chr5 33190372 33190830 + 3 NA Intergenic MamRep38|DNA|hAT -39134 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 380-56 chr10 128444369 128444585 + 3 NA Intergenic Tigger6a|DNA|TcMar-Tigger 158527 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 252-97 chr12 118463071 118463164 + 3 NA Intergenic MER90a|LTR|ERV1 86562 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 913-2 chr1 40894105 40894660 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -32019 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 486-20 chr1 229804137 229804412 + 3 NA Intergenic Intergenic 81544 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 528-89 chr15 27524321 27524666 + 3 NA intron (NM_033223, intron 7 of 9) L1MDa|LINE|L1 -363174 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 517-146 chr2 163270283 163270602 + 3 NA Intergenic L1ME1|LINE|L1 -431675 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 912-42 chr7 104712766 104713123 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 91148 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 508-212 chr6 122496625 122496917 + 3 NA intron (NM_001270393, intron 3 of 7) L1PA15-16|LINE|L1 24854 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 499-84 chr17 14460811 14461045 + 3 NA Intergenic Intergenic 157188 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 551-31 chr11 42948776 42949127 + 3 NA Intergenic Intergenic 320418 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 491-16 chr10 49305493 49305760 + 3 NA intron (NM_001135196, intron 1 of 2) intron (NM_001135196, intron 1 of 2) 6456 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 1118-8 chr19 36924663 36925145 + 3 NA intron (NM_001204835, intron 3 of 6) intron (NM_001204835, intron 3 of 6) 8572 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 914-29 chr8 87060937 87061472 + 3 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 194789 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 192-105 chr2 154165509 154165593 + 3 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 221157 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 531-16 chr1 244027374 244027693 + 3 NA intron (NR_033883, intron 8 of 11) intron (NR_033883, intron 8 of 11) -21406 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 579-35 chr14 55917624 55917889 + 3 NA Intergenic Intergenic -121082 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 582-65 chr2 30474085 30474362 + 3 NA intron (NM_182551, intron 2 of 6) LTR37A|LTR|ERV1 26977 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 833-19 chr20 58718715 58719134 + 3 NA Intergenic Intergenic 26124 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 877-2 chr11 11724246 11724669 + 3 NA Intergenic L1MA9|LINE|L1 58765 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 353-331 chr3 86355524 86355673 + 3 NA Intergenic L1MA8|LINE|L1 -126345 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 509-57 chr12 28606323 28606632 + 3 NA Intergenic L1M3de|LINE|L1 -415739 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 518-183 chr3 104973693 104974003 + 3 NA Intergenic L1MEa|LINE|L1 -392865 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 766-27 chr18 10947045 10947410 + 3 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) -187578 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 660-83 chr5 60027681 60027972 + 3 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -134100 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 134-38 chr17 79833461 79833536 + 3 NA 3' UTR (NM_003655, exon 5 of 5) 3' UTR (NM_003655, exon 5 of 5) 5942 NM_003655 8535 Hs.405046 NM_003655 ENSG00000141582 CBX4 NBP16|PC2 chromobox 4 protein-coding 425-327 chr9 126315999 126316232 + 3 NA Intergenic L1MC1|LINE|L1 -10714 NM_001011703 89853 Hs.162659 NM_033446 ENSG00000196814 MVB12B C9orf28|FAM125B multivesicular body subunit 12B protein-coding 535-189 chr4 136943114 136943440 + 3 NA intron (NR_149105, intron 2 of 3) L1MCa|LINE|L1 -250479 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 429-68 chr12 41004824 41005002 + 3 NA intron (NM_001843, intron 17 of 23) L1PA13|LINE|L1 96556 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 563-72 chr17 77694543 77694827 + 3 NA Intergenic LTR16B|LTR|ERVL 33874 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 276-263 chr20 42539941 42540102 + 3 NA intron (NM_133170, intron 7 of 31) HAL1|LINE|L1 -145462 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 892-15 chr14 48632370 48632959 + 3 NA Intergenic L2a|LINE|L2 -837650 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 349-201 chr16 80888115 80888306 + 3 NA intron (NR_131948, intron 1 of 2) intron (NR_131948, intron 1 of 2) 4386 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 609-145 chr9 111228521 111228802 + 3 NA Intergenic L1ME3A|LINE|L1 42553 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 459-16 chr1 169293198 169293464 + 3 NA intron (NR_104229, intron 6 of 12) intron (NR_104229, intron 6 of 12) 74466 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 427-166 chr3 137246659 137246929 + 3 NA Intergenic Intergenic 288811 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 355-239 chr2 62867953 62868116 + 3 NA intron (NM_001142615, intron 9 of 22) L1ME1|LINE|L1 161137 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 438-155 chr22 26692684 26692853 + 3 NA intron (NR_110543, intron 1 of 5) MLT1I|LTR|ERVL-MaLR 19925 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 337-585 chr9 82385437 82385590 + 3 NA Intergenic Intergenic 396741 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 751-74 chr7 64982035 64982417 + 3 NA intron (NM_001348050, intron 1 of 3) intron (NM_001348050, intron 1 of 3) 8810 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 718-94 chr8 89734051 89734438 + 3 NA intron (NR_125822, intron 1 of 4) THE1B|LTR|ERVL-MaLR 23467 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 593-104 chr4 30777961 30778176 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 57699 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 802-52 chr5 13969998 13970359 + 3 NA Intergenic L1PB1|LINE|L1 -25698 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 507-236 chr7 93748178 93748372 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR 31347 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 910-42 chr9 82052666 82053191 + 3 NA Intergenic Intergenic 64156 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 417-280 chr8 79022188 79022402 + 3 NA Intergenic Intergenic 184766 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 617-23 chr12 18374982 18375405 + 3 NA intron (NM_001288774, intron 13 of 32) MSTA-int|LTR|ERVL-MaLR 113653 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 349-399 chr5 5555581 5555804 + 3 NA Intergenic Intergenic 133015 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 393-283 chr5 113986037 113986234 + 3 NA Intergenic Intergenic -375935 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 289-98 chr12 28738935 28739091 + 3 NA Intergenic Intergenic -410265 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 712-47 chr2 165780441 165780808 + 3 NA intron (NM_004482, intron 1 of 10) ERVL-E-int|LTR|ERVL 13623 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 955-3 chr10 56951169 56951580 + 3 NA Intergenic Intergenic 353185 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 568-154 chr4 166182970 166183173 + 3 NA Intergenic Intergenic 309834 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 585-12 chr10 22825865 22826200 + 3 NA Intergenic MER61A|LTR|ERV1 -101992 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 601-45 chr15 34173060 34173406 + 3 NA intron (NM_024713, intron 1 of 9) L1M6|LINE|L1 36863 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 695-26 chr12 42811490 42811925 + 3 NA Intergenic LTR53|LTR|ERVL 119491 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 367-9 chr1 45454768 45454940 + 3 NA intron (NM_001320800, intron 1 of 9) L1MB4|LINE|L1 36309 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 689-105 chrX 44898724 44899086 + 3 NA intron (NR_111960, intron 2 of 27) L1MD1|LINE|L1 25730 NM_001291417 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 403-165 chr2 133250973 133251158 + 3 NA intron (NM_207481, intron 4 of 17) MER2|DNA|TcMar-Tigger -15130 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 204-218 chr4 65901923 65902035 + 3 NA Intergenic L1PB3|LINE|L1 -231484 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 989-15 chr20 42168330 42169134 + 3 NA intron (NM_133170, intron 17 of 31) MamRep137|DNA|TcMar-Tigger -516751 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 397-159 chr2 83305302 83305486 + 3 NA Intergenic Intergenic -217420 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 740-73 chr7 125835961 125836419 + 3 NA Intergenic Intergenic -571899 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 265-276 chr4 90823156 90823304 + 3 NA intron (NM_001145065, intron 8 of 10) (CA)n|Simple_repeat|Simple_repeat 588199 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 427-117 chr2 80410459 80410691 + 3 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 97196 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 384-385 chr8 134096900 134097114 + 3 NA Intergenic L2a|LINE|L2 210511 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 410-104 chr16 65897242 65897456 + 3 NA Intergenic Intergenic -321049 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 1060-23 chr7 4482307 4482920 + 3 NA Intergenic Intergenic -199682 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 790-32 chr3 46727447 46727914 + 3 NA intron (NR_147121, intron 3 of 3) L1ME4b|LINE|L1 8747 NR_147121 100287362 Hs.673244 NM_001205271 ENSG00000261603 PRSS46P PRSS46|TESSP6 serine protease 46, pseudogene pseudo 372-43 chr10 52941516 52941718 + 3 NA Intergenic L1ME2|LINE|L1 -169917 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 371-73 chr11 99108749 99108957 + 3 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 87904 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 292-59 chr10 105978230 105978375 + 3 NA Intergenic Charlie7a|DNA|hAT-Charlie -157969 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 288-231 chr20 49424902 49425134 + 3 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 57650 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 733-78 chr8 53277271 53277559 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity -25718 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 536-207 chr7 15713090 15713345 + 3 NA Intergenic L1MC1|LINE|L1 24839 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 752-58 chr4 168902025 168902340 + 3 NA intron (NM_001367567, intron 4 of 11) intron (NM_001367567, intron 4 of 11) 70087 NM_001367570 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 941-23 chr5 28890159 28890727 + 3 NA Intergenic MLT2A2|LTR|ERVL -36427 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 234-190 chr2 154488465 154488622 + 3 NA Intergenic Intergenic -31105 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 704-79 chr7 52587512 52587899 + 3 NA Intergenic MIR|SINE|MIR -447928 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 433-10 chr1 186584838 186585071 + 3 NA Intergenic Ricksha_0|DNA|MULE-MuDR 95469 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 338-592 chr9 80898414 80898577 + 3 NA Intergenic Intergenic 791040 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 856 chr1 56144344 56144787 + 3 NA Intergenic LTR16D|LTR|ERVL 199478 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 698-12 chr10 23346115 23346500 + 3 NA Intergenic Intergenic -1510 NM_001351306 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552 chromosome 10 open reading frame 67 protein-coding 658-135 chr9 103133751 103134100 + 3 NA Intergenic Intergenic 138592 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 790-41 chr5 116295058 116295450 + 3 NA Intergenic AluJb|SINE|Alu 39511 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 548-197 chr6 83836343 83836647 + 3 NA Intergenic Intergenic -16771 NM_001009994 134701 Hs.149454 NM_001009994 ENSG00000203877 RIPPLY2 C6orf159|SCDO6|dJ237I15.1 ripply transcriptional repressor 2 protein-coding 815-21 chr16 68739922 68740256 + 3 NA intron (NM_001317185, intron 2 of 15) intron (NM_001317185, intron 2 of 15) 2797 NM_004360 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 535-177 chr4 444363 444624 + 3 NA intron (NM_133474, intron 2 of 2) intron (NM_133474, intron 2 of 2) 29716 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 280-343 chr6 34388240 34388441 + 3 NA intron (NM_001202470, intron 5 of 8) intron (NM_001202470, intron 5 of 8) 4329 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 566-99 chr2 153506722 153507081 + 3 NA Intergenic L1PB1|LINE|L1 -28139 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 495-224 chr6 148994549 148994782 + 3 NA intron (NM_005715, intron 5 of 7) intron (NM_005715, intron 5 of 7) -29981 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 500-63 chr12 27809605 27809920 + 3 NA Intergenic AluJo|SINE|Alu 29529 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 451-130 chr20 39218148 39218442 + 3 NA intron (NR_027124, intron 1 of 3) L1ME4a|LINE|L1 6453 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 806-43 chr4 16388616 16389122 + 3 NA Intergenic Intergenic 162206 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 189-120 chr22 28567415 28567479 + 3 NA intron (NM_001145418, intron 2 of 22) (AC)n|Simple_repeat|Simple_repeat 107578 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 504-69 chr14 49010295 49010555 + 3 NA Intergenic Intergenic 575955 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 344-183 chr17 21089953 21090151 + 3 NA intron (NR_110895, intron 2 of 2) ERVL-E-int|LTR|ERVL 14496 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 791-42 chr20 42777193 42777756 + 3 NA intron (NM_133170, intron 4 of 31) L2a|LINE|L2 91991 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 983-18 chr6 126669605 126670018 + 3 NA Intergenic L1M7|LINE|L1 185180 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 213-228 chr5 36536858 36536939 + 3 NA Intergenic Intergenic -69457 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 918-4 chr11 22435316 22435695 + 3 NA Intergenic AluY|SINE|Alu 56514 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 415-99 chr17 68398349 68398634 + 3 NA intron (NM_001352899, intron 10 of 12) intron (NM_001352899, intron 10 of 12) -15132 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 530-71 chr14 47836267 47836487 + 3 NA Intergenic Intergenic -41363 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 711-4 chr1 158910144 158910486 + 3 NA Intergenic L1M1|LINE|L1 -21237 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 277-360 chr6 140439539 140439666 + 3 NA Intergenic Intergenic 234350 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 509-125 chr2 170548835 170549076 + 3 NA intron (NM_001083615, intron 31 of 33) Tigger15a|DNA|TcMar-Tigger 165612 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 335-495 chr7 28235107 28235344 + 3 NA intron (NR_034097, intron 3 of 3) intron (NR_034097, intron 3 of 3) -54430 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 738-20 chr15 62653493 62653885 + 3 NA intron (NM_015059, intron 4 of 55) AluSx1|SINE|Alu 6378 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 362-133 chr13 58920708 58920921 + 3 NA Intergenic Intergenic -687697 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 661-33 chr16 66932219 66932735 + 3 NA intron (NR_046109, intron 4 of 4) intron (NR_046109, intron 4 of 4) 1925 NM_016062 51647 Hs.9825 NM_016062 ENSG00000166595 CIAO2B CGI-128|CIA2B|FAM96B|MIP18 cytosolic iron-sulfur assembly component 2B protein-coding 620-5 chr1 153236549 153236896 + 3 NA Intergenic L1M5|LINE|L1 19138 NM_001195571 574414 Hs.135098 NM_001195571 ENSG00000203783 PRR9 - proline rich 9 protein-coding 373-156 chr17 53302311 53302508 + 3 NA Intergenic Intergenic 316904 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 567-29 chr10 111039001 111039263 + 3 NA Intergenic L1M1|LINE|L1 -37897 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 421-168 chr21 15472628 15472956 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -257142 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 347-326 chr3 186291365 186291539 + 3 NA intron (NM_001346, intron 5 of 24) L1ME1|LINE|L1 70782 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 706-58 chr5 57814471 57814898 + 3 NA Intergenic Intergenic 84478 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 555-215 chr8 144978109 144978314 + 3 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -16654 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 461-19 chr1 192487442 192487659 + 3 NA Intergenic L1MC4|LINE|L1 -88223 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 531-129 chr2 224199636 224199901 + 3 NA Intergenic Intergenic -160449 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 267-101 chr13 101902767 101902939 + 3 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) 13792 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 389-47 chr10 109175530 109175681 + 3 NA Intergenic Intergenic 747641 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 717-32 chr16 25529134 25529598 + 3 NA Intergenic HAL1ME|LINE|L1 -162593 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 763-44 chr3 104276242 104276732 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 -752371 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 602-145 chrX 142330296 142330743 + 3 NA Intergenic Intergenic -125229 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 429-34 chr10 43661741 43661931 + 3 NA intron (NR_038867, intron 1 of 4) L1ME2|LINE|L1 -12955 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 380-84 chr12 5352296 5352563 + 3 NA Intergenic L1MB7|LINE|L1 -79679 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 903-45 chr9 91784690 91785096 + 3 NA intron (NM_001318204, intron 1 of 7) L2a|LINE|L2 -148548 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 309-230 chr19 58136260 58136482 + 3 NA intron (NM_024620, intron 3 of 3) L1MB8|LINE|L1 14418 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 399-177 chr20 7572285 7572471 + 3 NA Intergenic Intergenic 200770 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 494-312 chr9 78036379 78036652 + 3 NA Intergenic Intergenic -4704 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 685-73 chr4 70082560 70082997 + 3 NA intron (NR_003720, intron 12 of 12) intron (NR_003720, intron 12 of 12) 15392 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 451-149 chr3 119198312 119198542 + 3 NA intron (NM_006952, intron 6 of 7) intron (NM_006952, intron 6 of 7) 24829 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 357-249 chr21 28098132 28098296 + 3 NA intron (NR_126011, intron 1 of 2) L1ME4a|LINE|L1 7811 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 630-144 chr8 127707282 127707712 + 3 NA intron (NR_117102, intron 2 of 3) intron (NR_117102, intron 2 of 3) 26470 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 270-223 chr22 25251854 25252013 + 3 NA Intergenic L1MB5|LINE|L1 32294 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 238-310 chr5 169238746 169238895 + 3 NA intron (NM_003062, intron 3 of 35) L1MC3|LINE|L1 24874 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 445-163 chr21 44361914 44362068 + 3 NA intron (NM_003307, intron 2 of 31) AluSz|SINE|Alu 8390 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 514-124 chr18 33500779 33501113 + 3 NA Intergenic Intergenic -59906 NM_001371120 556-234 chr8 129787542 129787827 + 3 NA Intergenic MER65A|LTR|ERV1 -1060 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 434-195 chr3 139093504 139093799 + 3 NA Intergenic Intergenic -10534 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 525-286 chrX 55803052 55803275 + 3 NA Intergenic Intergenic 85414 NR_148683 10325 Hs.50282 NM_006064 ENSG00000083750 RRAGB RAGB|bA465E19.1 Ras related GTP binding B protein-coding 339-81 chr10 130386388 130386556 + 3 NA Intergenic Intergenic 250063 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 520-290 chr8 46297531 46297764 + 3 NA Intergenic ALR/Alpha|Satellite|centr 319996 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 658-65 chr2 95232901 95233200 + 3 NA Intergenic Intergenic -41399 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 509-197 chr5 78572405 78572745 + 3 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 76197 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 463-197 chr3 139412572 139412798 + 3 NA intron (NR_121609, intron 1 of 4) L1PB2|LINE|L1 22882 NR_121608 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 614-100 chr5 81806198 81806540 + 3 NA Intergenic L1MA5A|LINE|L1 -55116 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 415-315 chrX 96592316 96592470 + 3 NA Intergenic Intergenic -92270 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 582-33 chr13 84362785 84363059 + 3 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 222320 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 473-44 chr11 19757511 19757685 + 3 NA intron (NM_182964, intron 1 of 37) MIRc|SINE|MIR 2485 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 465-324 chrX 89037158 89037451 + 3 NA Intergenic L1PBa|LINE|L1 290079 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 487-124 chr19 36638311 36638551 + 3 NA 3' UTR (NM_001322826, exon 5 of 5) 3' UTR (NM_001322826, exon 5 of 5) 28406 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 872-26 chr2 115374261 115374665 + 3 NA intron (NM_001321912, intron 4 of 25) MSTA-int|LTR|ERVL-MaLR 30648 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 670-17 chr10 110690814 110691127 + 3 NA intron (NM_001134363, intron 1 of 13) MLT1A0|LTR|ERVL-MaLR 46634 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 402-187 chr20 52929400 52929576 + 3 NA Intergenic Intergenic -42870 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 468-177 chr20 58731866 58732100 + 3 NA Intergenic L1MA7|LINE|L1 39183 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 554-206 chr8 120369848 120370122 + 3 NA intron (NM_021110, intron 47 of 47) intron (NM_021110, intron 47 of 47) 75165 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 959-23 chr3 43832340 43832908 + 3 NA Intergenic L1M7|LINE|L1 -141030 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 576-94 chr2 173518373 173518632 + 3 NA Intergenic L1MEc|LINE|L1 163630 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 514-81 chr14 42577657 42577936 + 3 NA Intergenic L1MA3|LINE|L1 970940 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 476-156 chr2 220199640 220199870 + 3 NA Intergenic Intergenic -293190 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 504-210 chr5 38277115 38277346 + 3 NA intron (NM_152403, intron 1 of 21) L1MA8|LINE|L1 13756 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 301-102 chr13 53567429 53567630 + 3 NA Intergenic Intergenic -247890 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 1074-4 chr12 2543662 2544255 + 3 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 128262 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 441-60 chr12 112522650 112522938 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -52442 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 532-141 chr2 228714101 228714406 + 3 NA Intergenic L1ME2z|LINE|L1 -102858 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 622-29 chr14 62608332 62608653 + 3 NA Intergenic (ATATA)n|Simple_repeat|Simple_repeat 436966 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 678-2 chr1 191052945 191053316 + 3 NA Intergenic Intergenic 175368 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 633-20 chr11 43087842 43088073 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 181412 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 460-10 chr1 119041659 119041877 + 3 NA intron (NM_015836, intron 4 of 5) intron (NM_015836, intron 4 of 5) -5637 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 337-580 chr9 74040388 74040547 + 3 NA Intergenic Intergenic -331064 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 501-40 chr11 115908962 115909141 + 3 NA Intergenic Intergenic -148851 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 503-218 chr4 79644589 79644814 + 3 NA Intergenic Intergenic 152108 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 962-22 chr8 24586737 24587294 + 3 NA Intergenic Intergenic -38397 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 436-218 chr4 98358679 98358864 + 3 NA intron (NM_001100430, intron 4 of 12) L1MD2|LINE|L1 97387 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 440-214 chr6 40563642 40563840 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 23623 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 320-3 chr1 15981469 15981624 + 3 NA Intergenic MER49|LTR|ERV1 -5414 NM_001242884 7709 Hs.433764 NM_003443 ENSG00000116809 ZBTB17 MIZ-1|ZNF151|ZNF60|pHZ-67 zinc finger and BTB domain containing 17 protein-coding 744-77 chr8 139085223 139085627 + 3 NA Intergenic Intergenic -171384 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 545-142 chr3 96412123 96412329 + 3 NA Intergenic Intergenic 52262 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 273-51 chr10 52714583 52714773 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 40726 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 840-16 chr15 66977615 66977974 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -21279 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 367-168 chr17 65652478 65652700 + 3 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -90941 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 446-59 chr11 37695768 37696069 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -242683 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 481-277 chr7 40704602 40704847 + 3 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 275215 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 502-205 chr4 127847482 127847791 + 3 NA Intergenic L1PA17|LINE|L1 -33257 NM_014264 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 570-50 chr12 55130847 55131221 + 3 NA TTS (NM_001005243) TTS (NM_001005243) 1265 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 511-114 chr2 46951116 46951306 + 3 NA intron (NM_001288951, intron 2 of 20) intron (NM_001288951, intron 2 of 20) -9356 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 542-82 chr18 38525809 38526009 + 3 NA Intergenic L1MCa|LINE|L1 868774 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 716-46 chr21 30353392 30353697 + 3 NA Intergenic L2b|LINE|L2 -4938 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 440-147 chr21 46105524 46105750 + 3 NA intron (NM_058174, intron 1 of 27) L1M4c|LINE|L1 7518 NM_058175 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 244-3 chr1 34313063 34313243 + 3 NA Intergenic L1MDb|LINE|L1 136246 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 554-97 chr17 79445237 79445495 + 3 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 70782 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 321-131 chr12 43344546 43344704 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 189310 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 530-175 chr4 58404410 58404710 + 3 NA Intergenic Intergenic 131768 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 483-110 chr2 51778407 51778625 + 3 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -592132 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 346-126 chr13 107563641 107563822 + 3 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -32483 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 597-110 chr5 124014262 124014604 + 3 NA Intergenic Intergenic 424087 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 664-2 chr1 30491154 30491479 + 3 NA Intergenic MER1A|DNA|hAT-Charlie -227456 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 757-24 chr18 5114639 5115064 + 3 NA Intergenic L1MA3|LINE|L1 33669 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 458-199 chr5 25598073 25598275 + 3 NA Intergenic Intergenic 407221 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 506-244 chr5 151932681 151932939 + 3 NA Intergenic L1MD3|LINE|L1 -7959 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 437-35 chr10 123706246 123706459 + 3 NA Intergenic Intergenic 39997 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 385-69 chr12 96867374 96867709 + 3 NA intron (NM_001306084, intron 67 of 67) L1MA8|LINE|L1 -39716 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 326-404 chr5 39839375 39839596 + 3 NA Intergenic Intergenic -212806 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 506-156 chr2 156460535 156460811 + 3 NA intron (NM_000408, intron 1 of 16) intron (NM_000408, intron 1 of 16) 24294 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 460-167 chr2 227977340 227977648 + 3 NA Intergenic Intergenic 105863 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 755-43 chr3 100499700 100500131 + 3 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 7296 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 448-308 chrX 92257188 92257353 + 3 NA intron (NM_032969, intron 3 of 5) MSTA|LTR|ERVL-MaLR 421809 NM_032969 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 712-53 chr21 21570784 21571213 + 3 NA Intergenic LTR68|LTR|ERV1 166321 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 660-90 chr6 40046982 40047418 + 3 NA Intergenic Intergenic -112738 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 1041-14 chrUn_KI270757v1 14466 14992 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 483-209 chr5 79140072 79140337 + 3 NA Intergenic Intergenic 28395 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 659-67 chr22 28122458 28122808 + 3 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -202021 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 473-266 chr8 48668058 48668312 + 3 NA intron (NR_105002, intron 2 of 3) intron (NR_105002, intron 2 of 3) 47782 NR_105004 101929217 Hs.547790 NR_105004 ENSG00000253455 LOC101929217 - uncharacterized LOC101929217 ncRNA 381-189 chr2 54713760 54714019 + 3 NA Intergenic Intergenic -11123 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 635-98 chr7 25498823 25499212 + 3 NA Intergenic Intergenic 164123 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 452-9 chr1 112206115 112206417 + 3 NA Intergenic AluSp|SINE|Alu -189948 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 539-73 chr14 83060746 83061092 + 3 NA Intergenic Intergenic 418287 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 415-286 chr8 100318431 100318629 + 3 NA intron (NM_001280539, intron 1 of 10) intron (NM_001280539, intron 1 of 10) -8577 NM_183419 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 1188-9 chr3 90453552 90454177 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1346243 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 444-152 chr3 31475807 31476136 + 3 NA Intergenic L1M5|LINE|L1 -56954 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 630-12 chr11 28526550 28526931 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -49192 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 581-11 chr10 31633501 31633882 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -233936 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 637-64 chr2 84899426 84899715 + 3 NA Intergenic MIRb|SINE|MIR -6086 NM_021103 9168 Hs.446574 NM_021103 ENSG00000034510 TMSB10 MIG12|TB10 thymosin beta 10 protein-coding 476-74 chr14 20564373 20564578 + 3 NA Intergenic PABL_B|LTR|ERV1 -3544 NM_001289110 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 608-76 chr2 143556371 143556646 + 3 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -380559 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 567-55 chr14 61362465 61362695 + 3 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 41137 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 924 chr1 22372407 22372884 + 3 NA Intergenic AluSx|SINE|Alu -79206 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 546-66 chr14 29405700 29406036 + 3 NA Intergenic MER53|DNA|hAT 521228 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 698-91 chr9 76528536 76528994 + 3 NA Intergenic LTR12D|LTR|ERV1 28132 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 480-287 chr8 43081048 43081335 + 3 NA intron (NR_033698, intron 5 of 7) intron (NR_033698, intron 5 of 7) -12315 NM_001277971 84197 Hs.491646 NM_032237 ENSG00000185900 POMK MDDGA12|MDDGC12|SGK196 protein O-mannose kinase protein-coding 655-129 chr8 123975468 123975850 + 3 NA intron (NM_001039112, intron 8 of 40) intron (NM_001039112, intron 8 of 40) 65123 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 415-231 chr6 39943200 39943401 + 3 NA Intergenic MIR3|SINE|MIR -8838 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 408-318 chr7 80571569 80571806 + 3 NA Intergenic L1M2b|LINE|L1 -30520 NM_001001547 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 875-27 chr4 87670248 87670608 + 3 NA Intergenic Intergenic 20148 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 408-202 chr22 45045439 45045636 + 3 NA Intergenic CR1_Mam|LINE|CR1 -35532 NM_001135862 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 496-42 chr10 123653985 123654358 + 3 NA Intergenic L1ME2|LINE|L1 -12184 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 461-229 chr6 4238610 4238777 + 3 NA Intergenic L1MD|LINE|L1 -48664 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 526-42 chr11 58200547 58200795 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR 3510 NM_001004459 219958 Hs.553644 NM_001004459 ENSG00000197887 OR1S2 OR11-231 olfactory receptor family 1 subfamily S member 2 protein-coding 394-130 chr16 82399399 82399665 + 3 NA Intergenic Intergenic -227437 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 1306-5 chr8 87134769 87135704 + 3 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 268821 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 284-104 chr13 39770687 39770860 + 3 NA intron (NM_001145079, intron 18 of 18) intron (NM_001145079, intron 18 of 18) -106638 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 610-126 chr4 60969995 60970371 + 3 NA Intergenic Intergenic 47564 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 664-52 chr2 77911766 77912044 + 3 NA intron (NR_110288, intron 1 of 3) L1M2|LINE|L1 -4029 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 570-102 chr2 45108675 45108959 + 3 NA Intergenic L2b|LINE|L2 -99365 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 538-179 chr4 100891611 100891927 + 3 NA Intergenic Intergenic -216656 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 517-82 chr14 72829524 72829723 + 3 NA intron (NM_001280542, intron 1 of 10) AluSx3|SINE|Alu 63026 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 628-15 chr1 158082575 158082914 + 3 NA intron (NM_018240, intron 3 of 14) AluJo|SINE|Alu 57194 NR_145471 100505785 Hs.664656 NR_145471 KIRREL1-IT1 KIRREL-IT1 KIRREL1 intronic transcript 1 ncRNA 261-247 chr3 100960442 100960562 + 3 NA intron (NM_001349332, intron 1 of 35) L1MCc|LINE|L1 32988 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 278-114 chr14 60463836 60464009 + 3 NA intron (NM_174978, intron 11 of 17) intron (NM_174978, intron 11 of 17) 22141 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 511-76 chr15 69940624 69940898 + 3 NA Intergenic Intergenic 105527 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 448-234 chr6 40053667 40053827 + 3 NA Intergenic Intergenic -119285 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 369-111 chr14 49143163 49143355 + 3 NA Intergenic Intergenic 443121 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 529-95 chr19 37449323 37449610 + 3 NA intron (NM_152484, intron 2 of 5) L1MCc|LINE|L1 17978 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 474-208 chr4 64952949 64953205 + 3 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 51423 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 789-34 chr3 189549592 189550072 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -46914 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 807 chr1 12696380 12696796 + 3 NA Intergenic Intergenic -19522 NM_001103170 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 408-256 chr4 178320121 178320293 + 3 NA Intergenic L1M4c|LINE|L1 -412271 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 566-10 chr10 23276141 23276455 + 3 NA intron (NM_001365862, intron 8 of 15) intron (NM_001365862, intron 8 of 15) -67659 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 1434-3 chr19 37636103 37636893 + 3 NA intron (NM_001320666, intron 5 of 5) intron (NM_001320666, intron 5 of 5) 18967 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 562-186 chr5 168768224 168768560 + 3 NA promoter-TSS (NR_029632) promoter-TSS (NR_029632) -137 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 493-68 chr12 133042680 133042950 + 3 NA intron (NM_001127372, intron 2 of 4) L1ME3B|LINE|L1 5233 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 227-394 chr9 68539155 68539239 + 3 NA intron (NM_153237, intron 1 of 1) LTR82A|LTR|ERVL 1670 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 490-150 chr2 116222357 116222678 + 3 NA Intergenic L1M4|LINE|L1 878702 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 926 chr1 56653612 56654045 + 3 NA intron (NM_006252, intron 1 of 8) intron (NM_006252, intron 1 of 8) -8510 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 694-76 chr20 56030064 56030456 + 3 NA Intergenic Intergenic -24741 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 603-152 chr7 34274254 34274516 + 3 NA Intergenic Intergenic 368846 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 362-436 chr8 77206128 77206294 + 3 NA Intergenic Intergenic -205167 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 721-2 chr1 49248620 49248960 + 3 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -8621 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 188-157 chr4 138105698 138105837 + 3 NA non-coding (NR_038380, exon 3 of 7) non-coding (NR_038380, exon 3 of 7) 16753 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 936-16 chr2 105415186 105415696 + 3 NA intron (NM_201557, intron 1 of 5) L1ME4b|LINE|L1 -15774 NM_001318894 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 938-9 chr14 78476264 78476833 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 72829 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 733-48 chr3 6424468 6424750 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 380840 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 1421-2 chr7 91682965 91683879 + 3 NA Intergenic Intergenic 197280 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 660-34 chr18 46498028 46498358 + 3 NA intron (NM_001145472, intron 19 of 23) intron (NM_001145472, intron 19 of 23) 20893 NM_001173129 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 336-352 chr22 30855129 30855256 + 3 NA intron (NM_001282741, intron 1 of 12) L1ME2|LINE|L1 -26489 NM_001282742 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 585-50 chr15 63119099 63119421 + 3 NA Intergenic LTR56|LTR|ERV1 -2601 NM_171846 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 440-19 chr1 242596453 242596638 + 3 NA Intergenic MER57-int|LTR|ERV1 -71848 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 1375-4 chr17 16554629 16555304 + 3 NA intron (NM_020653, intron 5 of 5) MADE2|DNA|TcMar-Mariner 14238 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 432-225 chr5 89204072 89204336 + 3 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -300099 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 512-143 chr2 240533129 240533348 + 3 NA intron (NR_148698, intron 3 of 5) L1ME1|LINE|L1 24750 NM_017844 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 546-208 chr6 67460555 67460764 + 3 NA Intergenic Intergenic -594692 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 325-5 chr1 25933175 25933397 + 3 NA Intergenic Intergenic -26409 NM_203399 3925 Hs.209983 NM_005563 ENSG00000117632 STMN1 C1orf215|LAP18|Lag|OP18|PP17|PP19|PR22|SMN stathmin 1 protein-coding 609-56 chr2 56678842 56679094 + 3 NA Intergenic Intergenic -493198 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 515-168 chr3 153318007 153318300 + 3 NA Intergenic LTR37B|LTR|ERV1 155927 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 444-289 chrX 64872478 64872677 + 3 NA Intergenic L3|LINE|CR1 103873 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 424-278 chr8 91169036 91169179 + 3 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -36378 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 657-86 chr6 118461296 118461623 + 3 NA 3' UTR (NM_001178035, exon 14 of 14) 3' UTR (NM_001178035, exon 14 of 14) -39914 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 697-36 chr16 82343675 82344061 + 3 NA Intergenic Intergenic -173644 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 344-379 chr5 33201804 33201935 + 3 NA Intergenic Intergenic -27866 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 477-290 chr8 123895315 123895599 + 3 NA intron (NM_001039112, intron 1 of 40) MIR|SINE|MIR 43470 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 292-300 chr3 178700376 178700598 + 3 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 141637 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 378-83 chr11 65837150 65837320 + 3 NA intron (NM_152760, intron 1 of 12) L1ME3|LINE|L1 3272 NM_152760 254122 Hs.591950 NM_152760 ENSG00000172803 SNX32 SNX6B sorting nexin 32 protein-coding 498-162 chr3 2556983 2557149 + 3 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 318237 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 447-197 chr4 85689701 85689968 + 3 NA intron (NM_001025616, intron 2 of 9) L1PA16|LINE|L1 -32634 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 428-175 chr3 56161663 56161848 + 3 NA intron (NR_132749, intron 4 of 17) L1PA16|LINE|L1 306712 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 457-126 chr2 158253408 158253640 + 3 NA intron (NM_138803, intron 9 of 13) intron (NM_138803, intron 9 of 13) 86874 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 429-205 chr3 182336494 182336710 + 3 NA Intergenic L1ME2|LINE|L1 149760 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 808-52 chr7 54033545 54033951 + 3 NA Intergenic Intergenic -221817 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 283-236 chr2 106068552 106068706 + 3 NA intron (NM_032411, intron 1 of 3) intron (NM_032411, intron 1 of 3) 2941 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 515-126 chr2 123871407 123871609 + 3 NA Intergenic Intergenic 153666 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 530-139 chr2 129149260 129149520 + 3 NA Intergenic L1MA2|LINE|L1 124501 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 568-103 chr2 54379066 54379366 + 3 NA Intergenic Intergenic 48332 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 862-7 chr10 91344684 91345381 + 3 NA intron (NR_024467, intron 4 of 4) intron (NR_024467, intron 4 of 4) -64203 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 567-48 chr13 92791815 92792077 + 3 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -70332 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 471-10 chr1 96952658 96952886 + 3 NA Intergenic Intergenic -143151 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 527-128 chr2 59795594 59795834 + 3 NA Intergenic Intergenic 578006 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 367-491 chrX 86942388 86942559 + 3 NA Intergenic L1MCa|LINE|L1 -575329 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 655-25 chr12 15492433 15492716 + 3 NA intron (NM_030667, intron 2 of 26) intron (NM_030667, intron 2 of 26) -54037 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 482-285 chr8 132257072 132257371 + 3 NA intron (NM_004519, intron 1 of 14) L1M4|LINE|L1 -151956 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 655-48 chr17 54701434 54701684 + 3 NA Intergenic L1M4|LINE|L1 -199132 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 465-276 chr7 80985680 80985976 + 3 NA Intergenic Intergenic -63439 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 660-103 chr7 118645353 118645763 + 3 NA Intergenic L1MB5|LINE|L1 420854 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 684-49 chr19 37192099 37192520 + 3 NA intron (NM_152279, intron 2 of 4) intron (NM_152279, intron 2 of 4) 18227 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 844-48 chr4 33507172 33507737 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 532439 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 590-14 chr10 45023198 45023476 + 3 NA Intergenic LTR16E1|LTR|ERVL 22414 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 487-280 chr7 120016057 120016254 + 3 NA Intergenic Intergenic -108780 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 738-57 chr6 65457111 65457537 + 3 NA intron (NM_198283, intron 4 of 9) AluJb|SINE|Alu 122480 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 383-371 chr8 50639034 50639197 + 3 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 474984 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 1004-4 chr10 44938676 44939172 + 3 NA intron (NR_033842, intron 1 of 7) L1MB7|LINE|L1 20765 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 612-95 chr3 133140609 133141003 + 3 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 15985 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 277-268 chr3 110409109 110409297 + 3 NA Intergenic L1MA10|LINE|L1 660756 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 1222-4 chr2 49023004 49023519 + 3 NA intron (NM_000145, intron 2 of 9) intron (NM_000145, intron 2 of 9) -36342 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 450-298 chr8 78386323 78386492 + 3 NA Intergenic Intergenic -129933 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 434-149 chr2 108406686 108406852 + 3 NA Intergenic Intergenic 28815 NM_006588 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 362-173 chr15 95293327 95293516 + 3 NA intron (NR_034095, intron 1 of 3) intron (NR_034095, intron 1 of 3) 33679 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 515-253 chr7 74438131 74438377 + 3 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -15652 NM_001199207 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 517-235 chr6 55284427 55284730 + 3 NA Intergenic LFSINE_Vert|SINE|tRNA -42891 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 522-68 chr12 108003453 108003641 + 3 NA Intergenic Intergenic -99776 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 676-31 chr14 57919007 57919458 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -53140 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 368-251 chr2 182363115 182363268 + 3 NA intron (NM_005019, intron 1 of 14) L1PA13|LINE|L1 63857 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 575-183 chr7 45298164 45298476 + 3 NA Intergenic L1MA9|LINE|L1 140529 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 379-182 chr20 14019133 14019387 + 3 NA intron (NM_001351663, intron 2 of 17) LTR8A|LTR|ERV1 23744 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 500-78 chr14 43644548 43644714 + 3 NA Intergenic L1PB2|LINE|L1 862652 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 532-142 chr20 22913554 22913808 + 3 NA Intergenic AluSc8|SINE|Alu -121739 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 560-143 chr6 19908455 19908697 + 3 NA Intergenic Intergenic 71206 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 761-3 chr1 80410536 80410952 + 3 NA Intergenic MLT1E3-int|LTR|ERVL-MaLR -125011 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 449-224 chr5 151360585 151360850 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -13158 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 344-407 chr5 173455023 173455166 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR 107639 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 510-143 chr2 64266559 64266877 + 3 NA Intergenic MLT2C1|LTR|ERVL 38317 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 566-120 chr22 49250936 49251236 + 3 NA Intergenic L1MEc|LINE|L1 292380 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 774-42 chr2 65759158 65759582 + 3 NA Intergenic MER33|DNA|hAT-Charlie -326771 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 428-150 chr20 8835852 8836104 + 3 NA intron (NM_182734, intron 32 of 32) MLT1H|LTR|ERVL-MaLR 4793 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 531-94 chr19 19998399 19998610 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 40751 NM_001077349 91120 Hs.306298 NM_033196 ENSG00000197124 ZNF682 BC39498_3 zinc finger protein 682 protein-coding 353-335 chr3 108289672 108289880 + 3 NA Intergenic Intergenic -6714 NM_001282556 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 1299-6 chr7 27010248 27011105 + 3 NA Intergenic L1MB3|LINE|L1 85324 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 463-258 chr6 156578380 156578624 + 3 NA Intergenic AluSz|SINE|Alu -199353 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 518-174 chr3 44044467 44044669 + 3 NA Intergenic (AAGG)n|Simple_repeat|Simple_repeat -69644 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 422-60 chr12 49175484 49175708 + 3 NA Intergenic Intergenic 13484 NM_006009 7846 Hs.654422 NM_006009 ENSG00000167552 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin alpha 1a protein-coding 424-185 chr4 32059806 32059984 + 3 NA intron (NR_125936, intron 1 of 2) L1MCa|LINE|L1 -37473 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 583-161 chr8 84392733 84393032 + 3 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -22602 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 517-99 chr17 21990180 21990390 + 3 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -212710 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 437-169 chr3 35057147 35057409 + 3 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 336745 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 916-20 chr3 141790186 141790702 + 3 NA intron (NM_139209, intron 2 of 3) intron (NM_139209, intron 2 of 3) 12243 NM_139209 131890 Hs.680654 NM_139209 ENSG00000114124 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 687-16 chr10 67505410 67505787 + 3 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -102188 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 1104-8 chr4 31852336 31853123 + 3 NA Intergenic L1MB5|LINE|L1 -144650 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 339-611 chr9 88769369 88769509 + 3 NA Intergenic L1MC3|LINE|L1 -23534 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 702-50 chr2 193883801 193884136 + 3 NA Intergenic L1MEf|LINE|L1 -460301 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 479-144 chr3 109569410 109569597 + 3 NA Intergenic HAL1|LINE|L1 -33325 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 363-317 chr4 37721413 37721587 + 3 NA Intergenic L1ME3|LINE|L1 -35124 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 456-334 chr9 7780235 7780516 + 3 NA Intergenic L2a|LINE|L2 19403 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 730-30 chr2 115118837 115119222 + 3 NA intron (NM_001178037, intron 1 of 25) MER50|LTR|ERV1 42314 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 944-7 chr12 126462920 126463331 + 3 NA intron (NR_130748, intron 6 of 11) intron (NR_130748, intron 6 of 11) -13798 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 350-512 chr8 78408954 78409107 + 3 NA Intergenic MER104|DNA|TcMar-Tc2 -107310 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 539-205 chr8 87052307 87052653 + 3 NA intron (NM_173538, intron 4 of 10) HUERS-P3-int|LTR|ERV1 186065 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 546-151 chr3 98359443 98359789 + 3 NA Intergenic L1M1|LINE|L1 5762 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 215-12 chr1 165489517 165489619 + 3 NA intron (NR_026744, intron 5 of 6) intron (NR_026744, intron 5 of 6) -44213 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 627-44 chr18 33038112 33038517 + 3 NA intron (NM_001308126, intron 21 of 23) intron (NM_001308126, intron 21 of 23) -265291 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 618-97 chr5 56761812 56762252 + 3 NA Intergenic Intergenic 10839 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 433-225 chr5 79448734 79449026 + 3 NA intron (NM_001277078, intron 3 of 5) intron (NM_001277078, intron 3 of 5) 64956 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 465-161 chr21 16475087 16475254 + 3 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 54875 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 493-185 chr20 60725047 60725213 + 3 NA Intergenic Intergenic 160568 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 349-370 chr4 61031476 61031618 + 3 NA Intergenic L1MB7|LINE|L1 108928 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 1015-15 chr6 67046828 67047460 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -1008207 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 698-13 chr10 31558080 31558549 + 3 NA Intergenic L1MA7|LINE|L1 -158559 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 458-267 chr8 128257931 128258197 + 3 NA Intergenic Intergenic 107948 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 347-396 chr5 51988295 51988445 + 3 NA Intergenic Intergenic -19661 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 509-47 chr11 101504253 101504556 + 3 NA exon (NM_004621, exon 2 of 13) exon (NM_004621, exon 2 of 13) 15501 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 508-138 chr22 19690413 19690712 + 3 NA Intergenic AluJo|SINE|Alu -23941 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 1271-4 chr16 86647989 86648872 + 3 NA Intergenic MIR|SINE|MIR 69921 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 497-252 chr6 158970877 158971060 + 3 NA Intergenic L1M4|LINE|L1 29219 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 688-54 chr16 77538459 77538872 + 3 NA Intergenic Charlie15a|DNA|hAT-Charlie -103631 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 594-30 chr11 91478287 91478703 + 3 NA Intergenic L1PA15|LINE|L1 -609293 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 447-144 chr2 188927203 188927425 + 3 NA Intergenic L1M3b|LINE|L1 -47059 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 228-153 chr2 27438406 27438577 + 3 NA intron (NM_001321361, intron 11 of 18) intron (NM_001321361, intron 11 of 18) -3875 NM_001168364 200634 Hs.59509 NM_173853 ENSG00000157992 KRTCAP3 KCP3 keratinocyte associated protein 3 protein-coding 934-26 chr6 101825390 101825818 + 3 NA intron (NM_001166247, intron 9 of 16) intron (NM_001166247, intron 9 of 16) 426619 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 440-124 chr2 113994372 113994548 + 3 NA intron (NR_148508, intron 1 of 1) L1MB7|LINE|L1 -14476 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 463-86 chr14 32544452 32544636 + 3 NA intron (NM_004274, intron 3 of 13) intron (NM_004274, intron 3 of 13) 215246 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 776-55 chr8 46045685 46046076 + 3 NA Intergenic ALR/Alpha|Satellite|centr 571763 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 574-179 chr8 82271506 82271847 + 3 NA Intergenic Intergenic -429390 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 425-150 chr2 157726934 157727158 + 3 NA Intergenic Intergenic -98182 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 334-447 chr5 169239357 169239499 + 3 NA intron (NM_003062, intron 3 of 35) L1MC3|LINE|L1 24266 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 354-20 chr1 153383756 153383921 + 3 NA Intergenic L1PA17|LINE|L1 7138 NM_001319201 6279 Hs.416073 NM_002964 ENSG00000143546 S100A8 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 S100 calcium binding protein A8 protein-coding 345-36 chr1 206879679 206879857 + 3 NA Intergenic L1MB7|LINE|L1 13959 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 484-256 chr8 34796127 34796388 + 3 NA intron (NR_125746, intron 2 of 3) MER44A|DNA|TcMar-Tigger 12336 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 497-178 chr3 78284541 78284790 + 3 NA Intergenic Intergenic -235702 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 548-82 chr16 49154958 49155162 + 3 NA Intergenic L1MA9|LINE|L1 126778 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 434-85 chr14 75824329 75824519 + 3 NA intron (NM_015072, intron 28 of 31) intron (NM_015072, intron 28 of 31) 157571 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 636-109 chr5 30431402 30431717 + 3 NA Intergenic L1MCa|LINE|L1 550999 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 881-36 chr7 4372865 4373396 + 3 NA Intergenic LTR67B|LTR|ERVL -238293 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 370-162 chr15 92732830 92733080 + 3 NA Intergenic L1MB5|LINE|L1 -62529 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 506-104 chr16 62168273 62168570 + 3 NA Intergenic L1PA17|LINE|L1 -131983 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 508-184 chr5 28205808 28206045 + 3 NA Intergenic Intergenic 81739 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 457-31 chr10 115601096 115601330 + 3 NA intron (NM_207303, intron 26 of 28) L1ME1|LINE|L1 507848 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 575-90 chr2 114275948 114276205 + 3 NA Intergenic HAL1|LINE|L1 -166565 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 497-81 chr14 84267449 84267735 + 3 NA Intergenic Intergenic -1004340 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 492-283 chr9 82439682 82439991 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 451064 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 1054-6 chr2 132836852 132837474 + 3 NA intron (NM_207481, intron 11 of 17) HAL1|LINE|L1 -78394 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 856-40 chr5 159485843 159486343 + 3 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -19817 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 636-106 chr5 19069947 19070228 + 3 NA Intergenic Intergenic 816185 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 211-292 chr8 24599624 24599706 + 3 NA Intergenic L1MD2|LINE|L1 -51047 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 545-13 chr1 190490252 190490674 + 3 NA Intergenic Intergenic 11912 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 541-146 chr21 31496058 31496419 + 3 NA intron (NM_003253, intron 1 of 28) AluSz|SINE|Alu 62849 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 346-495 chr8 114518956 114519131 + 3 NA Intergenic L1MC4|LINE|L1 -1082104 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 438-284 chr8 131356406 131356599 + 3 NA Intergenic L1PA15|LINE|L1 -315593 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 375-39 chr10 34478845 34478999 + 3 NA intron (NM_001184789, intron 3 of 22) intron (NM_001184789, intron 3 of 22) 336374 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 284-114 chr14 52349431 52349628 + 3 NA Intergenic Intergenic 35217 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 478-38 chr11 6955057 6955341 + 3 NA intron (NM_013250, intron 6 of 6) intron (NM_013250, intron 6 of 6) 27537 NM_001354854 7762 Hs.523457 NM_013250 ENSG00000149054 ZNF215 BAZ-2|BAZ2|ZKSCAN11|ZSCAN43 zinc finger protein 215 protein-coding 495-183 chr4 112502073 112502266 + 3 NA Intergenic Intergenic -13210 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 667-93 chr5 144816196 144816581 + 3 NA Intergenic Intergenic 610997 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 561-90 chr2 3852217 3852424 + 3 NA Intergenic Intergenic 121712 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 560-115 chr3 94981491 94981699 + 3 NA intron (NR_015400, intron 4 of 7) L1MC3|LINE|L1 43332 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 331-382 chr4 66276325 66276512 + 3 NA promoter-TSS (NR_031673) promoter-TSS (NR_031673) -406 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 848-45 chr8 106232540 106233133 + 3 NA Intergenic Ricksha_0|DNA|MULE-MuDR -37342 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 501-160 chr3 30504668 30504985 + 3 NA Intergenic AluSx|SINE|Alu -14042 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 560-69 chr18 1234169 1234460 + 3 NA Intergenic L1PA13|LINE|L1 125315 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 345-466 chr6 52311643 52311843 + 3 NA Intergenic Intergenic -27001 NR_158963 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 562-114 chr2 128393720 128393962 + 3 NA Intergenic Intergenic -74973 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 223-250 chr4 89116098 89116235 + 3 NA Intergenic Intergenic 3349 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 883-21 chr20 43038260 43038739 + 3 NA intron (NM_133170, intron 1 of 31) L1M5|LINE|L1 69756 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 182-152 chr6 95814660 95814724 + 3 NA Intergenic Intergenic -201282 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 718-56 chr3 151078377 151078707 + 3 NA intron (NR_024066, intron 5 of 5) L3|LINE|CR1 -8256 NM_053002 116931 Hs.744234 NM_053002 ENSG00000144893 MED12L NOPAR|TNRC11L|TRALP|TRALPUSH mediator complex subunit 12L protein-coding 457-182 chr4 103497049 103497256 + 3 NA Intergenic Intergenic 72110 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 588-152 chr7 153105959 153106391 + 3 NA Intergenic Intergenic 306059 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 474-42 chr11 14328346 14328628 + 3 NA intron (NM_001177314, intron 1 of 5) intron (NM_001177314, intron 1 of 5) 29998 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 278-408 chr8 35568885 35569050 + 3 NA intron (NM_001322818, intron 3 of 16) intron (NM_001322818, intron 3 of 16) 24575 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 523-23 chr10 34160280 34160514 + 3 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -387717 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 372-176 chr16 61912933 61913122 + 3 NA intron (NM_001796, intron 2 of 11) MER2|DNA|TcMar-Tigger 123411 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 549-66 chr15 83630158 83630502 + 3 NA Intergenic L1M5|LINE|L1 -23793 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 471-58 chr12 3706335 3706617 + 3 NA intron (NM_001144958, intron 3 of 19) MIR|SINE|MIR 46633 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 851-11 chr14 66323095 66323607 + 3 NA Intergenic Intergenic -163020 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 543-159 chr21 22002407 22002711 + 3 NA Intergenic Intergenic 95900 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 1492-6 chr8 83799596 83800484 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -382747 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 599-92 chr3 140352318 140352536 + 3 NA intron (NM_022131, intron 2 of 16) LTR90B|LTR|LTR 156362 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 547-158 chr4 63781285 63781665 + 3 NA Intergenic Intergenic 627975 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 524-230 chr7 31208456 31208662 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 132167 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 607-35 chr13 63067627 63067954 + 3 NA Intergenic Intergenic 260304 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 677-67 chr5 39860565 39861124 + 3 NA Intergenic Intergenic -191447 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 515-252 chr7 71766536 71766787 + 3 NA Intergenic L1MC1|LINE|L1 -458891 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 510-43 chr11 42065207 42065540 + 3 NA intron (NR_135065, intron 4 of 9) intron (NR_135065, intron 4 of 9) 20085 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 211-101 chr16 31189735 31189848 + 3 NA exon (NM_001170634, exon 10 of 15) exon (NM_001170634, exon 10 of 15) 9681 NM_001170937 2521 Hs.46894 NM_004960 ENSG00000089280 FUS ALS6|ETM4|FUS1|HNRNPP2|POMP75|TLS FUS RNA binding protein protein-coding 436-110 chr17 57410751 57410968 + 3 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 112738 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 1226 chr10 92856662 92857502 + 3 NA intron (NM_001319195, intron 1 of 21) L1M4b|LINE|L1 8562 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 444-41 chr11 81463987 81464137 + 3 NA Intergenic L2a|LINE|L2 426774 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 788-59 chrX 47413075 47413570 + 3 NA exon (NM_003446, exon 4 of 4) exon (NM_003446, exon 4 of 4) 24672 NR_003710 100124540 Hs.693443 NR_003710 ENSG00000221459 SNORA11C - small nucleolar RNA, H/ACA box 11C snoRNA 571-32 chr12 13732399 13732652 + 3 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 247831 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 1471-6 chr8 29689679 29690548 + 3 NA Intergenic L1ME4b|LINE|L1 57996 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 523-178 chr3 54577912 54578266 + 3 NA intron (NM_018398, intron 8 of 37) intron (NM_018398, intron 8 of 37) 61768 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 587-128 chr5 3973714 3974059 + 3 NA Intergenic L1MEf|LINE|L1 378054 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 583-35 chr11 91564296 91564544 + 3 NA Intergenic L1MDa|LINE|L1 -660614 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 939-33 chr9 27477802 27478483 + 3 NA intron (NM_024761, intron 1 of 3) L1MEd|LINE|L1 -46172 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 453-105 chr19 57465355 57465562 + 3 NA Intergenic L1M1|LINE|L1 -8719 NM_020633 57191 Hs.677423 NM_020633 ENSG00000178201 VN1R1 V1RL1|VNR19I1|ZVNH1|ZVNR1 vomeronasal 1 receptor 1 protein-coding 532-13 chr1 210781476 210781728 + 3 NA intron (NM_002238, intron 9 of 10) intron (NM_002238, intron 9 of 10) 351772 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 663-40 chr15 59427803 59428095 + 3 NA Intergenic L1MA3|LINE|L1 -10237 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 512-236 chr6 60562333 60562638 + 3 NA Intergenic Intergenic -1011645 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 174-43 chr14 47515511 47515596 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 159401 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 341-528 chr8 89265372 89265524 + 3 NA Intergenic Intergenic 492263 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 751-3 chr10 14628756 14629304 + 3 NA intron (NM_001282695, intron 2 of 5) MamRep1151|LTR?|LTR? -24629 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 495-244 chr8 20804708 20805044 + 3 NA Intergenic Intergenic -148757 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 484-22 chr1 225137289 225137510 + 3 NA intron (NM_001367479, intron 27 of 85) AluSx|SINE|Alu 207724 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 352-565 chr9 105426081 105426337 + 3 NA intron (NM_001330731, intron 15 of 15) intron (NM_001330731, intron 15 of 15) -21825 NM_001145313 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 363-22 chr1 175651902 175652031 + 3 NA intron (NM_003285, intron 1 of 22) L1ME3Cz|LINE|L1 91629 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 608-105 chr4 15902151 15902448 + 3 NA Intergenic Intergenic 36441 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 571-43 chr13 59235963 59236217 + 3 NA Intergenic Intergenic -776628 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 642-31 chr14 51692305 51692606 + 3 NA intron (NM_001042481, intron 3 of 14) intron (NM_001042481, intron 3 of 14) -24828 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 424-163 chr21 23782175 23782351 + 3 NA Intergenic Intergenic -397428 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 981-17 chr20 51145437 51146054 + 3 NA Intergenic LTR16E2|LTR|ERVL -122638 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 485-302 chr8 142945441 142945685 + 3 NA Intergenic Intergenic -27720 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 663-59 chr2 129126617 129127007 + 3 NA Intergenic L1MC5a|LINE|L1 147079 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 668-85 chr5 108560327 108560751 + 3 NA Intergenic Intergenic 167722 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 596-154 chr7 70847546 70847762 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 -284490 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 798-16 chr14 76737414 76737876 + 3 NA Intergenic L1MA4A|LINE|L1 -23823 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 426-296 chr8 87345033 87345256 + 3 NA intron (NM_173538, intron 8 of 10) intron (NM_173538, intron 8 of 10) 478729 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 392-2 chr1 58860983 58861167 + 3 NA intron (NR_108106, intron 1 of 1) L2b|LINE|L2 75924 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 445-50 chr12 38689976 38690196 + 3 NA intron (NM_153634, intron 15 of 19) intron (NM_153634, intron 15 of 19) 215505 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 664-99 chr6 121819573 121819896 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 384088 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 561-101 chr2 108142916 108143359 + 3 NA Intergenic L1PREC2|LINE|L1 74704 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 801-21 chr17 60611853 60612239 + 3 NA intron (NM_003620, intron 1 of 5) intron (NM_003620, intron 1 of 5) 11863 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 813-7 chr12 14856635 14857097 + 3 NA Intergenic AluSx1|SINE|Alu -13340 NM_021071 420 Hs.591158 NM_021071 ENSG00000111339 ART4 ARTC4|CD297|DO|DO/ART4|DOK1 ADP-ribosyltransferase 4 (Dombrock blood group) protein-coding 372-138 chr14 49421040 49421193 + 3 NA Intergenic Intergenic 165264 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 609-116 chr6 49065215 49065445 + 3 NA Intergenic Intergenic 397923 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 654-73 chr20 39973685 39974065 + 3 NA Intergenic L1PA8|LINE|L1 -30586 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 722-35 chr16 4198780 4199328 + 3 NA intron (NM_001098814, intron 3 of 5) intron (NM_001098814, intron 3 of 5) 43026 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 410-339 chrX 70862273 70862549 + 3 NA intron (NM_001003811, intron 5 of 30) intron (NM_001003811, intron 5 of 30) -16116 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 340-111 chr12 65313437 65313664 + 3 NA intron (NM_001031679, intron 2 of 6) intron (NM_001031679, intron 2 of 6) 34563 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 180-180 chr9 104053036 104053107 + 3 NA Intergenic L1MEd|LINE|L1 39403 NR_121580 101928550 Hs.144722 NR_121580 ENSG00000270332 SMC2-AS1 - SMC2 antisense RNA 1 (head to head) ncRNA 621-38 chr15 24736597 24736809 + 3 NA Intergenic L1MCa|LINE|L1 61309 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 455-54 chr11 106548540 106548809 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 297267 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 532-135 chr2 186271979 186272185 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -185765 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 525-244 chr7 81913811 81914036 + 3 NA Intergenic L1M3c|LINE|L1 -95254 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 648-47 chr15 47880655 47880951 + 3 NA Intergenic L2|LINE|L2 -34567 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 526-65 chr13 35445186 35445445 + 3 NA intron (NM_015678, intron 39 of 57) intron (NM_015678, intron 39 of 57) 31374 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 693-20 chr12 4887531 4887961 + 3 NA Intergenic L1MB3|LINE|L1 -22159 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 552-76 chr15 92204766 92205074 + 3 NA Intergenic L1M1|LINE|L1 -188961 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 561-122 chr3 6392395 6392729 + 3 NA Intergenic Intergenic 412887 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 317-73 chr11 12696003 12696199 + 3 NA intron (NM_021961, intron 2 of 12) intron (NM_021961, intron 2 of 12) 21680 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 537-207 chr6 9131295 9131534 + 3 NA Intergenic Intergenic 479205 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 591-132 chr5 87997623 87997969 + 3 NA Intergenic L2c|LINE|L2 271049 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 422-25 chr10 10947196 10947414 + 3 NA intron (NR_024411, intron 1 of 3) intron (NR_024411, intron 1 of 3) 4858 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 316-316 chr20 16088797 16088932 + 3 NA Intergenic Intergenic -102982 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 429-179 chr20 58488600 58488867 + 3 NA intron (NR_130908, intron 1 of 1) L1ME3F|LINE|L1 26205 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 797-25 chr2 30065130 30065529 + 3 NA Intergenic L1MA2|LINE|L1 -81678 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 755-23 chr15 60055037 60055455 + 3 NA Intergenic L1MEf|LINE|L1 50935 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 720-19 chr11 113502120 113502619 + 3 NA Intergenic Intergenic -26971 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 472-155 chr2 81833329 81833559 + 3 NA Intergenic L1MA7|LINE|L1 -366498 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 393-155 chr2 13462137 13462353 + 3 NA Intergenic L1MC3|LINE|L1 -455232 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 417-277 chr8 63315107 63315296 + 3 NA Intergenic Intergenic 146198 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 651-102 chr5 134168302 134168527 + 3 NA intron (NM_006930, intron 2 of 4) intron (NM_006930, intron 2 of 4) 8536 NM_170679 6500 Hs.171626 NM_006930 ENSG00000113558 SKP1 EMC19|OCP-II|OCP2|SKP1A|TCEB1L|p19A S-phase kinase associated protein 1 protein-coding 495-13 chr1 196539497 196539839 + 3 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 42813 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 430-51 chr11 39467182 39467408 + 3 NA Intergenic Intergenic 818437 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 369-446 chr9 102763431 102763619 + 3 NA Intergenic L1MC1|LINE|L1 -231808 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 470-115 chr2 5660081 5660288 + 3 NA intron (NR_110580, intron 2 of 4) L1PREC2|LINE|L1 30934 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 543-42 chr10 100083953 100084148 + 3 NA Intergenic L1MB7|LINE|L1 -2181 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 701-32 chr17 34779193 34779501 + 3 NA Intergenic Intergenic 182113 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 594-2 chr1 34235173 34235582 + 3 NA Intergenic MER113|DNA|hAT-Charlie 58470 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 588-50 chr16 76218721 76218961 + 3 NA Intergenic AluJr|SINE|Alu -58560 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 728-88 chr7 28972936 28973277 + 3 NA Intergenic L2|LINE|L2 -6861 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 717-3 chr1 48434819 48435136 + 3 NA intron (NM_019073, intron 3 of 12) intron (NM_019073, intron 3 of 12) 37227 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 988-25 chr4 49637589 49638243 + 3 NA Intergenic (GAATG)n|Satellite|Satellite 651274 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 1036-5 chr11 21003203 21003824 + 3 NA intron (NM_201551, intron 12 of 18) MIR3|SINE|MIR 333927 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 531-208 chr6 5909365 5909572 + 3 NA Intergenic Intergenic 94576 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 317-488 chr8 99737775 99737906 + 3 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 155867 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 487-155 chr2 192647040 192647202 + 3 NA Intergenic MIR|SINE|MIR -102724 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 433-213 chr4 171634415 171634634 + 3 NA intron (NR_147157, intron 2 of 4) L1PREC2|LINE|L1 4239 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 618-55 chr19 58248424 58248822 + 3 NA 3' UTR (NM_001320780, exon 7 of 7) 3' UTR (NM_001320780, exon 7 of 7) 19709 NM_001320787 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 704-17 chr12 15671558 15671955 + 3 NA intron (NM_004447, intron 3 of 20) U6|snRNA|snRNA 117632 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 488-29 chr10 65677413 65677664 + 3 NA intron (NR_120647, intron 3 of 5) L1M5|LINE|L1 106113 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 548-212 chr7 63985107 63985407 + 3 NA Intergenic L1M1|LINE|L1 -13549 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 406-184 chr3 39948991 39949208 + 3 NA intron (NM_001284424, intron 2 of 15) L2|LINE|L2 139439 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 614-127 chr8 46866719 46867101 + 3 NA Intergenic L1PA13|LINE|L1 26024 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 460-280 chr7 153645648 153645930 + 3 NA Intergenic Intergenic -102344 NM_001364498 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 359-311 chr3 26279039 26279248 + 3 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -343663 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 816-46 chr8 101048744 101049161 + 3 NA Intergenic L2|LINE|L2 -3102 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 377-100 chr12 128511385 128511609 + 3 NA intron (NM_001136103, intron 2 of 8) MER77B|LTR|ERVL 217405 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 261-304 chr5 24098950 24099039 + 3 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 147646 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 791-25 chr15 58132914 58133502 + 3 NA Intergenic Intergenic -4961 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 785-54 chr7 46528710 46529128 + 3 NA Intergenic MER41-int|LTR|ERV1 168203 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 450-11 chr1 155523799 155524112 + 3 NA intron (NM_018489, intron 1 of 27) intron (NM_018489, intron 1 of 27) -38087 NR_147964 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 632-8 chr1 195174734 195175082 + 3 NA Intergenic L1PA16|LINE|L1 913807 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 694-108 chr6 48192373 48192882 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger -123938 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 607-27 chr11 50533230 50533504 + 3 NA Intergenic ALR/Alpha|Satellite|centr 124220 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 539-132 chr20 28496901 28497153 + 3 NA Intergenic ALR/Alpha|Satellite|centr 105638 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 472-36 chr10 64373633 64373928 + 3 NA Intergenic L1MC4a|LINE|L1 -451748 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 209-95 chr14 69801304 69801399 + 3 NA Intergenic MIR|SINE|MIR -4110 NM_003049 6554 Hs.952 NM_003049 ENSG00000100652 SLC10A1 NTCP solute carrier family 10 member 1 protein-coding 387-14 chr1 177809774 177809931 + 3 NA Intergenic MARNA|DNA|TcMar-Mariner 109328 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 324-202 chr16 54870880 54871110 + 3 NA Intergenic MIRb|SINE|MIR -22762 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 572-194 chrX 91260206 91260547 + 3 NA Intergenic L2b|LINE|L2 -174463 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 613-57 chr2 57219068 57219456 + 3 NA Intergenic Intergenic -688389 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 752-43 chr2 185809132 185809640 + 3 NA intron (NM_173651, intron 17 of 22) intron (NM_173651, intron 17 of 22) -9235 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 623-111 chr5 158928765 158929071 + 3 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 169038 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 383-213 chr2 214978658 214978862 + 3 NA intron (NR_103740, intron 34 of 54) intron (NR_103740, intron 34 of 54) 53326 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 321-330 chr20 31726121 31726287 + 3 NA Intergenic Intergenic -2241 NM_001322240 598 Hs.516966 NM_001191 ENSG00000171552 BCL2L1 BCL-XL/S|BCL2L|BCLX|Bcl-X|PPP1R52 BCL2 like 1 protein-coding 709-83 chr7 53454199 53454646 + 3 NA Intergenic AluSz|SINE|Alu 357509 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 346-69 chr11 39048659 39048866 + 3 NA Intergenic Intergenic 399904 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 452-262 chr8 43597882 43598081 + 3 NA Intergenic ALR/Alpha|Satellite|centr 305539 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 780-59 chr7 32333536 32333905 + 3 NA intron (NM_001322059, intron 1 of 17) MIRb|SINE|MIR -34392 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 526-102 chr17 73581090 73581277 + 3 NA intron (NM_001144952, intron 1 of 44) Tigger4a|DNA|TcMar-Tigger 63262 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 479-107 chr2 98285350 98285554 + 3 NA intron (NM_001345864, intron 16 of 21) L1MB7|LINE|L1 -60703 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 583-16 chr10 39029281 39029544 + 3 NA Intergenic ALR/Alpha|Satellite|centr 332816 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 443-3 chr1 43886739 43886964 + 3 NA intron (NR_073018, intron 6 of 10) (TTTG)n|Simple_repeat|Simple_repeat -46469 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 603-65 chr17 65800242 65800565 + 3 NA intron (NM_001353129, intron 21 of 26) L1MB7|LINE|L1 26048 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 233-8 chr1 106072090 106072220 + 3 NA Intergenic Intergenic -43902 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 517-251 chr7 62866270 62866514 + 3 NA Intergenic ALR/Alpha|Satellite|centr 437664 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 719-38 chr2 76118072 76118537 + 3 NA Intergenic L1PA14|LINE|L1 -407389 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 685-25 chr14 105120531 105121036 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 26636 NR_110546 102723354 Hs.569410 NR_110546 LINC02298 - long intergenic non-protein coding RNA 2298 ncRNA 386-325 chr7 33571401 33571571 + 3 NA intron (NR_145411, intron 22 of 23) L1M5|LINE|L1 -333429 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 389-330 chr6 156282105 156282294 + 3 NA Intergenic Intergenic -96551 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 288-335 chr5 105864330 105864507 + 3 NA Intergenic L1PA14|LINE|L1 764944 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 377-302 chr5 7970167 7970333 + 3 NA Intergenic Intergenic 101102 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 1003-3 chr10 65671099 65671826 + 3 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 100037 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 600-49 chr18 1212150 1212510 + 3 NA Intergenic L1MA5A|LINE|L1 147299 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 309-405 chr4 100654486 100654652 + 3 NA Intergenic Intergenic 20544 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 729-50 chr3 34161603 34161986 + 3 NA Intergenic Intergenic 363164 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 523-117 chr19 24341674 24341910 + 3 NA Intergenic ALR/Alpha|Satellite|centr -178345 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 747-15 chr12 12694765 12695180 + 3 NA intron (NM_006143, intron 2 of 3) intron (NM_006143, intron 2 of 3) 1211 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 840-3 chr1 199535679 199536122 + 3 NA Intergenic L1M5|LINE|L1 387302 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 376-325 chr5 87949831 87950030 + 3 NA Intergenic MER135|DNA|DNA 287888 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 500-317 chr9 72545168 72545443 + 3 NA intron (NM_138691, intron 1 of 23) Zaphod3|DNA|hAT-Tip100 23504 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 858-4 chr10 41742280 41742871 + 3 NA Intergenic ALR/Alpha|Satellite|centr 625470 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 699-33 chr14 89135148 89135406 + 3 NA Intergenic L1MB4|LINE|L1 281956 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 484-15 chr1 118110338 118110539 + 3 NA intron (NM_206996, intron 4 of 48) intron (NM_206996, intron 4 of 48) 74790 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 452-285 chr9 20325172 20325461 + 3 NA Intergenic Intergenic 85922 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 444-17 chr1 207292916 207293233 + 3 NA Intergenic Intergenic -28604 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 629-25 chr11 34414437 34414804 + 3 NA Intergenic L1MEi|LINE|L1 -24314 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 562-204 chr7 49381226 49381543 + 3 NA Intergenic MER61-int|LTR|ERV1 -392254 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 1011-6 chr10 117055869 117056423 + 3 NA intron (NM_001258300, intron 1 of 17) L1MB3|LINE|L1 -50569 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 391-29 chr1 216508245 216508400 + 3 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -84874 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 846-4 chr1 237206019 237206401 + 3 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 164026 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 427-200 chr5 19803454 19803618 + 3 NA intron (NM_001349559, intron 3 of 12) MER3|DNA|hAT-Charlie 82736 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 302-227 chr2 127845704 127845827 + 3 NA 3' UTR (NM_004805, exon 4 of 4) 3' UTR (NM_004805, exon 4 of 4) 12390 NM_004805 5433 Hs.715348 NM_004805 ENSG00000144231 POLR2D HSRBP4|HSRPB4|RBP4|RPB16 RNA polymerase II subunit D protein-coding 586-32 chr11 54865680 54866038 + 3 NA Intergenic ALR/Alpha|Satellite|centr 159027 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 503-309 chr9 103592136 103592322 + 3 NA Intergenic Intergenic -267196 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 436-168 chr21 28173675 28173866 + 3 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 54897 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 258-20 chr1 175847662 175847819 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -29603 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 836-30 chr2 51532678 51533366 + 3 NA intron (NR_135237, intron 5 of 10) L1ME1|LINE|L1 500421 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 460-199 chr3 82460026 82460322 + 3 NA intron (NR_147146, intron 8 of 8) ERV24B_Prim-int|LTR|ERV1 474032 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 405-323 chr8 86278721 86278877 + 3 NA Intergenic MER4B-int|LTR|ERV1 -48418 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 296-171 chr16 47701129 47701328 + 3 NA 3' UTR (NM_000293, exon 31 of 31) 3' UTR (NM_000293, exon 31 of 31) -157353 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 699-3 chr1 57932322 57932793 + 3 NA intron (NM_021080, intron 1 of 16) L1MC1|LINE|L1 71976 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 591-79 chr2 181534701 181535041 + 3 NA exon (NM_000885, exon 27 of 28) exon (NM_000885, exon 27 of 28) 77485 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 707-15 chr12 9909125 9909470 + 3 NA intron (NM_207375, intron 4 of 4) HERVI-int|LTR|ERV1 23073 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 666-97 chr5 124957413 124957846 + 3 NA Intergenic Intergenic -79202 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 842-10 chr11 34724338 34724833 + 3 NA Intergenic L1MEd|LINE|L1 92019 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 581-160 chr7 89895471 89895741 + 3 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -223794 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 521-171 chr4 7565255 7565553 + 3 NA intron (NM_020777, intron 3 of 26) (GAT)n|Simple_repeat|Simple_repeat 105376 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 581-31 chr12 60416659 60417000 + 3 NA Intergenic Intergenic 727459 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 1224-5 chr3 62382287 62382801 + 3 NA Intergenic (TTCTT)n|Simple_repeat|Simple_repeat -8994 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 348-142 chr14 65708437 65708627 + 3 NA intron (NR_038167, intron 7 of 8) L1M2|LINE|L1 237430 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 658-88 chr4 46310501 46310887 + 3 NA intron (NM_001114175, intron 4 of 8) intron (NM_001114175, intron 4 of 8) 78685 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 402-338 chr8 68834681 68834836 + 3 NA Intergenic L1MEc|LINE|L1 269432 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 425-186 chr3 94872269 94872442 + 3 NA Intergenic Intergenic -65908 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 893-38 chr6 104250564 104250945 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 608792 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 351-394 chr5 117196910 117197150 + 3 NA Intergenic Intergenic -218482 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 483-12 chr1 155430492 155430689 + 3 NA intron (NM_018489, intron 5 of 27) L1M5|LINE|L1 -2590 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 532-109 chr19 56988946 56989236 + 3 NA Intergenic Intergenic -131050 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 645-21 chr12 40399401 40399714 + 3 NA intron (NM_173600, intron 2 of 173) intron (NM_173600, intron 2 of 173) 6163 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 480-58 chr12 72944807 72945054 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -214260 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 562-178 chr5 66264127 66264484 + 3 NA Intergenic L1MC5|LINE|L1 -54859 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 1052-10 chr16 11620482 11621107 + 3 NA Intergenic MER102c|DNA|hAT-Charlie -33328 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 206-46 chr11 37016330 37016443 + 3 NA Intergenic L1MB1|LINE|L1 -418107 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 853-28 chr5 4271100 4271649 + 3 NA Intergenic L1MEf|LINE|L1 -502107 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 289-367 chr5 46312432 46312582 + 3 NA Intergenic ALR/Alpha|Satellite|centr -616127 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 417-108 chr17 66001639 66001848 + 3 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -175200 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 912-40 chr6 101735270 101735648 + 3 NA intron (NM_001166247, intron 6 of 16) THE1B|LTR|ERVL-MaLR 336474 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 569-113 chr22 37436835 37437189 + 3 NA Intergenic L1MD3|LINE|L1 -9533 NM_052906 114794 Hs.344170 NM_052906 ENSG00000166897 ELFN2 LRRC62|PPP1R29 extracellular leucine rich repeat and fibronectin type III domain containing 2 protein-coding 592-20 chr11 5155338 5155797 + 3 NA Intergenic Intergenic -3198 NM_012375 23538 Hs.553520 NM_012375 ENSG00000182070 OR52A1 HPFH1OR olfactory receptor family 52 subfamily A member 1 protein-coding 390-336 chr6 130112901 130113072 + 3 NA intron (NM_001007102, intron 18 of 21) intron (NM_001007102, intron 18 of 21) 93342 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 889-21 chr2 166442638 166443291 + 3 NA intron (NR_045628, intron 13 of 25) intron (NR_045628, intron 13 of 25) 44007 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 269-265 chr4 28439520 28439640 + 3 NA Intergenic Intergenic -380002 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 122-3 chr1 150489265 150489316 + 3 NA intron (NR_073514, intron 3 of 16) intron (NR_073514, intron 3 of 16) 1871 NM_001271896 80222 Hs.288974 NM_025150 ENSG00000143374 TARS2 COXPD21|TARSL1|thrRS threonyl-tRNA synthetase 2, mitochondrial protein-coding 669-59 chr2 183515409 183515822 + 3 NA Intergenic L2c|LINE|L2 391172 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 502-236 chr6 133127071 133127281 + 3 NA Intergenic Intergenic 39096 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 343-571 chr9 6209799 6209964 + 3 NA Intergenic L1M4|LINE|L1 -5268 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 713-75 chr7 8015614 8016077 + 3 NA intron (NM_138426, intron 2 of 7) L1ME4b|LINE|L1 47049 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 459-122 chr19 24350457 24350795 + 3 NA Intergenic ALR/Alpha|Satellite|centr -187179 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 307-141 chr14 60035053 60035223 + 3 NA intron (NR_075071, intron 29 of 32) L1MA4|LINE|L1 -56773 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 444-269 chr8 126330654 126330855 + 3 NA Intergenic Intergenic 5259 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 411-66 chr12 14940567 14940764 + 3 NA Intergenic L1PA16|LINE|L1 -2128 NM_152321 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 298-51 chr10 68313755 68313908 + 3 NA intron (NM_001033083, intron 1 of 8) (ACA)n|Simple_repeat|Simple_repeat -17862 NM_001322438 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 818-45 chr4 99167592 99168026 + 3 NA intron (NR_037884, intron 3 of 9) L1PB3|LINE|L1 -6162 NR_028270 359806 Hs.537400 NR_028270 PCNAP1 p1PCNA proliferating cell nuclear antigen pseudogene 1 pseudo 648-13 chr10 54186968 54187309 + 3 NA intron (NM_001142770, intron 11 of 34) intron (NM_001142770, intron 11 of 34) -299092 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 604-38 chr12 45091359 45091664 + 3 NA Intergenic AluSz6|SINE|Alu -26100 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 425-111 chr17 34854773 34854975 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie 106586 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 210-22 chr1 231888185 231888351 + 3 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -37566 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 787-23 chr2 225971707 225972215 + 3 NA Intergenic Intergenic -170833 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 370-42 chr10 42363199 42363350 + 3 NA intron (NR_024380, intron 1 of 2) MER92B|LTR|ERV1 4771 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1044-4 chr12 33785963 33786635 + 3 NA Intergenic L1MA6|LINE|L1 -236197 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 242-279 chr4 125463048 125463218 + 3 NA intron (NM_001291303, intron 9 of 16) intron (NM_001291303, intron 9 of 16) -44126 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 712-95 chr8 73624132 73624421 + 3 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 122564 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 492-175 chr3 94704139 94704379 + 3 NA Intergenic Intergenic -234004 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 596-131 chr5 57635977 57636262 + 3 NA Intergenic Intergenic -14541 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 855-44 chr6 108788509 108788999 + 3 NA Intergenic L1MEd|LINE|L1 37100 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 423-105 chr18 553092 553396 + 3 NA Intergenic L1MC4a|LINE|L1 -27136 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 377-16 chr1 106761357 106761488 + 3 NA Intergenic Intergenic -56817 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 378-332 chr5 18841137 18841330 + 3 NA Intergenic Intergenic 1033959 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 875-13 chr17 16551851 16552391 + 3 NA exon (NM_001346167, exon 6 of 6) exon (NM_001346167, exon 6 of 6) 17083 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 611-94 chr20 56599124 56599398 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 21698 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 436-297 chr8 53737118 53737305 + 3 NA intron (NM_213620, intron 13 of 13) LTR2|LTR|ERV1 105831 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 958-20 chr5 106724977 106725590 + 3 NA Intergenic Intergenic 285731 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 646-130 chr8 110582746 110583209 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 444456 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 995-15 chr3 31919802 31920262 + 3 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -61718 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 555-185 chr7 57276260 57276499 + 3 NA Intergenic Intergenic -54205 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 547-232 chr8 32088889 32089156 + 3 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 62804 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 491-203 chr5 24374478 24374730 + 3 NA Intergenic Intergenic 270374 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 509-34 chr11 10239103 10239289 + 3 NA intron (NM_030962, intron 1 of 39) L1M5|LINE|L1 55011 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 644-61 chr3 77661971 77662344 + 3 NA Intergenic Intergenic 386806 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 422-268 chr6 136368696 136368859 + 3 NA intron (NM_001198611, intron 7 of 16) L1MB2|LINE|L1 -78926 NM_001077440 9774 Hs.486542 NM_014739 ENSG00000029363 BCLAF1 BTF|bK211L9.1 BCL2 associated transcription factor 1 protein-coding 671-54 chr20 33846973 33847360 + 3 NA intron (NM_176812, intron 1 of 4) MER34C2|LTR|ERV1 35818 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 362-115 chr12 43581094 43581254 + 3 NA Intergenic Intergenic -28971 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 851-16 chr18 2933409 2934070 + 3 NA intron (NM_014646, intron 8 of 19) intron (NM_014646, intron 8 of 19) 12884 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 262-203 chr2 65848247 65848352 + 3 NA Intergenic MIR|SINE|MIR -415700 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 504-282 chr9 135593237 135593416 + 3 NA Intergenic L1M5|LINE|L1 18401 NR_034016 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 456-277 chr6 61855258 61855483 + 3 NA intron (NM_001350622, intron 6 of 9) MIR|SINE|MIR 281240 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 838-21 chr21 27414406 27414969 + 3 NA Intergenic L1M3c|LINE|L1 -307692 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 147-2 chr1 210385297 210385370 + 3 NA intron (NM_001122834, intron 3 of 11) intron (NM_001122834, intron 3 of 11) 55967 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 436-80 chr14 20566705 20566864 + 3 NA Intergenic MER4E1|LTR|ERV1 -5853 NM_001289110 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 403-270 chr6 66327521 66327762 + 3 NA Intergenic Intergenic 539762 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 530-131 chr2 105887135 105887364 + 3 NA intron (NM_001004720, intron 3 of 3) intron (NM_001004720, intron 3 of 3) 35402 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 486-236 chr5 13800917 13801100 + 3 NA intron (NM_001369, intron 47 of 78) L2a|LINE|L2 143472 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 163-119 chr8 52225791 52225901 + 3 NA intron (NM_001352828, intron 4 of 27) intron (NM_001352828, intron 4 of 27) 22798 NR_148196 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 319-234 chr2 37205062 37205200 + 3 NA TTS (NM_001322373) TTS (NM_001322373) 8635 NR_136316 100505876 Hs.666958 NM_001322373 ENSG00000218739 CEBPZOS CEBPZ-AS1 CEBPZ opposite strand protein-coding 566-95 chr2 118744780 118744997 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 103295 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 417-208 chr4 175662585 175662732 + 3 NA intron (NM_001261447, intron 1 of 4) intron (NM_001261447, intron 1 of 4) 125018 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 738-47 chr4 114840784 114841242 + 3 NA intron (NM_022569, intron 10 of 13) intron (NM_022569, intron 10 of 13) 184254 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 375-18 chr1 151038789 151038950 + 3 NA exon (NM_001159642, exon 4 of 10) exon (NM_001159642, exon 4 of 10) 2283 NM_001159642 149428 Hs.591473 NM_138278 ENSG00000163141 BNIPL BNIP-S|BNIP-Salpha|BNIP-Sbeta|BNIPL-1|BNIPL-2|BNIPL1|BNIPL2|BNIPS|PP753 BCL2 interacting protein like protein-coding 211-18 chr1 185068996 185069142 + 3 NA intron (NM_007212, intron 1 of 6) intron (NM_007212, intron 1 of 6) 23511 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 574-90 chr2 224209100 224209488 + 3 NA Intergenic Intergenic -169975 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 463-19 chr1 105506933 105507145 + 3 NA Intergenic Intergenic 111896 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 621-71 chr22 32677944 32678298 + 3 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -122695 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 731-22 chr12 39880325 39880686 + 3 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 225576 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 640-8 chr10 19738772 19739143 + 3 NA Intergenic L1PA13|LINE|L1 -10407 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 601-114 chr4 177153090 177153461 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -156599 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 259-408 chr8 112209065 112209170 + 3 NA Intergenic Intergenic -434376 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 441-5 chr1 61841233 61841557 + 3 NA intron (NM_001350145, intron 17 of 43) intron (NM_001350145, intron 17 of 43) -4680 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 684-55 chr2 79542917 79543321 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 19936 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 502-79 chr13 97073919 97074239 + 3 NA Intergenic L1MB7|LINE|L1 -79349 NM_001346195 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 686-13 chr10 111713902 111714250 + 3 NA Intergenic MER52D|LTR|ERV1 469689 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 376-289 chr4 97446320 97446526 + 3 NA intron (NR_102713, intron 3 of 5) intron (NR_102713, intron 3 of 5) 79497 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 985-15 chr4 42963532 42964087 + 3 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 70543 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 495-7 chr1 153173467 153173778 + 3 NA promoter-TSS (NR_110685) promoter-TSS (NR_110685) -896 NR_110685 101928009 Hs.385720 NR_110685 ENSG00000229699 LOC101928009 - uncharacterized LOC101928009 ncRNA 603-172 chr8 139087875 139088267 + 3 NA Intergenic Intergenic -174030 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 1163-3 chr12 60059358 60059875 + 3 NA Intergenic Intergenic 370246 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 662-28 chr15 39658816 39659087 + 3 NA intron (NM_152597, intron 10 of 11) L1MB7|LINE|L1 77872 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 651-73 chr2 171282613 171283011 + 3 NA Intergenic Intergenic -51519 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 1151-4 chr12 46736494 46737159 + 3 NA Intergenic L1PA15-16|LINE|L1 89171 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 449-36 chr10 100161261 100161588 + 3 NA intron (NR_144757, intron 7 of 10) L1ME3Cz|LINE|L1 24605 NM_001347861 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 769-44 chr4 76331650 76332045 + 3 NA intron (NM_001042784, intron 19 of 23) intron (NM_001042784, intron 19 of 23) 25821 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 467-66 chr12 108264498 108264780 + 3 NA Intergenic L1ME1|LINE|L1 56023 NM_001142345 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 363-139 chr14 61473369 61473579 + 3 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 96720 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 485-124 chr2 21573118 21573310 + 3 NA Intergenic Intergenic 137438 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 904-18 chr16 76206416 76206992 + 3 NA Intergenic Intergenic -70697 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 551-227 chr8 142055044 142055237 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR -121199 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 295-219 chr2 107630157 107630334 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 100826 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 445-54 chr12 126056912 126057086 + 3 NA Intergenic Intergenic -38993 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 554-128 chr2 206872045 206872303 + 3 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat -67344 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 422-135 chr19 33099172 33099375 + 3 NA intron (NR_135270, intron 8 of 20) intron (NR_135270, intron 8 of 20) 18092 NM_018025 55094 Hs.466436 NM_018025 ENSG00000076650 GPATCH1 ECGP|GPATC1 G-patch domain containing 1 protein-coding 463-143 chr2 83760041 83760217 + 3 NA Intergenic L1MA5|LINE|L1 237315 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 408-195 chr21 23412649 23412829 + 3 NA Intergenic Intergenic -27904 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 504-170 chr3 72200865 72201171 + 3 NA Intergenic Intergenic 49761 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 570-197 chr8 79155080 79155372 + 3 NA Intergenic L1MEg|LINE|L1 -176962 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 525-66 chr13 83865008 83865192 + 3 NA Intergenic Intergenic 17293 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 752-19 chr14 77607734 77608112 + 3 NA intron (NM_004863, intron 1 of 11) intron (NM_004863, intron 1 of 11) 8844 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 411-197 chr3 194903078 194903304 + 3 NA Intergenic Charlie5|DNA|hAT-Charlie -134482 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 438-212 chr5 24503752 24503933 + 3 NA intron (NM_001317222, intron 7 of 10) intron (NM_001317222, intron 7 of 10) 141136 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 440-126 chr2 124689597 124689846 + 3 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 664434 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 377-52 chr10 109834946 109835102 + 3 NA Intergenic Intergenic 88222 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 321-231 chr17 52483805 52483943 + 3 NA intron (NR_146898, intron 1 of 3) L1MEg|LINE|L1 93352 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 470-68 chr14 41599177 41599436 + 3 NA Intergenic Intergenic -7550 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1114-8 chr9 7255681 7256269 + 3 NA Intergenic L1MC1|LINE|L1 498625 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 453-102 chr19 37241754 37242094 + 3 NA intron (NM_001345948, intron 5 of 5) (AT)n|Simple_repeat|Simple_repeat -9961 NR_110719 101927667 Hs.633102 NR_110718 ENSG00000226686 LINC01535 - long intergenic non-protein coding RNA 1535 ncRNA 688-95 chr6 69265011 69265461 + 3 NA intron (NM_001704, intron 20 of 31) MER5B|DNA|hAT-Charlie 531230 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 392-55 chr12 23645705 23645933 + 3 NA intron (NM_152989, intron 10 of 17) intron (NM_152989, intron 10 of 17) -61233 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 570-99 chr19 29179348 29179646 + 3 NA Intergenic L1MA2|LINE|L1 33654 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 560-54 chr15 49342789 49343065 + 3 NA intron (NM_152647, intron 13 of 15) L1PA16|LINE|L1 -80315 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 526-191 chr4 181775863 181776286 + 3 NA Intergenic L1MA4A|LINE|L1 53899 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 914-13 chr18 78722172 78722681 + 3 NA Intergenic Intergenic -257849 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 418-196 chr4 108232277 108232481 + 3 NA Intergenic L1PA15|LINE|L1 60259 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 783-19 chr12 30568615 30568975 + 3 NA Intergenic Intergenic 108449 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 304-85 chr11 82032200 82032390 + 3 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -141459 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 377-236 chr2 207588027 207588242 + 3 NA intron (NM_001330133, intron 3 of 3) L1MD3|LINE|L1 29012 NM_001371428 369-379 chr7 13350209 13350406 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 636207 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 534-208 chr5 167117889 167118200 + 3 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) 44802 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 540-60 chr13 26883474 26883679 + 3 NA Intergenic Intergenic -122790 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 244-372 chr8 88971221 88971390 + 3 NA Intergenic Intergenic -643822 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 443-92 chr14 53572502 53572739 + 3 NA Intergenic Intergenic 375864 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 963-3 chr10 16202552 16202989 + 3 NA Intergenic L1MA2|LINE|L1 -234173 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 722-3 chr1 73097236 73097552 + 3 NA Intergenic Intergenic -208776 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 451-114 chr2 69486544 69486727 + 3 NA intron (NM_014911, intron 17 of 21) intron (NM_014911, intron 17 of 21) 33536 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 514-235 chr5 125621841 125622073 + 3 NA Intergenic L2a|LINE|L2 128696 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 504-272 chr8 139511989 139512254 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 191002 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 593-93 chr21 20503648 20503957 + 3 NA Intergenic L1PA15-16|LINE|L1 -245117 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 420-38 chr10 72974978 72975283 + 3 NA Intergenic L1MA5A|LINE|L1 -20324 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 1203-13 chr8 89110025 89110613 + 3 NA Intergenic L1MA9|LINE|L1 647392 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 627-112 chr7 62845031 62845258 + 3 NA Intergenic ALR/Alpha|Satellite|centr 458912 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1084-27 chr8 120920199 120920745 + 3 NA Intergenic Intergenic -108426 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 479-148 chr3 193844275 193844522 + 3 NA promoter-TSS (NR_146718) promoter-TSS (NR_146718) -389 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 296-20 chr1 205363314 205363455 + 3 NA Intergenic AluJb|SINE|Alu -6294 NM_001271865 55220 Hs.10414 NM_018203 ENSG00000162873 KLHDC8A - kelch domain containing 8A protein-coding 405-129 chr2 16212573 16212739 + 3 NA Intergenic (TTTTAT)n|Simple_repeat|Simple_repeat 162229 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 436-69 chr12 87279805 87280043 + 3 NA Intergenic Intergenic -50815 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 579-62 chr19 43910218 43910423 + 3 NA Intergenic Intergenic -8517 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 416-125 chr15 27628689 27628899 + 3 NA Intergenic L1MEg|LINE|L1 -467475 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 751-84 chr9 103308996 103309420 + 3 NA intron (NR_121578, intron 3 of 9) intron (NR_121578, intron 3 of 9) 15825 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 269-329 chr5 157334744 157334932 + 3 NA intron (NM_001037333, intron 21 of 30) L1MC4a|LINE|L1 10839 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 1144-12 chr8 125818663 125819294 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 132219 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 484-3 chr1 43835762 43836039 + 3 NA intron (NM_001363573, intron 5 of 10) intron (NM_001363573, intron 5 of 10) -2722 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 483-113 chr2 65487560 65487854 + 3 NA Intergenic Intergenic -55108 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 252-277 chr3 132316614 132316774 + 3 NA promoter-TSS (NM_001134194) promoter-TSS (NM_001134194) -713 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 460-171 chr20 19012310 19012580 + 3 NA Intergenic MIRb|SINE|MIR -182242 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 360-21 chr1 229215039 229215330 + 3 NA Intergenic L1ME4b|LINE|L1 -40383 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 244-353 chr8 15313579 15313686 + 3 NA Intergenic Intergenic -75201 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 399-134 chr2 14762168 14762329 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 129531 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 544-207 chr7 42655286 42655519 + 3 NA Intergenic L1MEc|LINE|L1 51045 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 672-53 chr2 33773874 33774312 + 3 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -45876 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 506-278 chr8 63334025 63334252 + 3 NA Intergenic Intergenic -131711 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 454-178 chr2 165645411 165645684 + 3 NA intron (NM_024969, intron 2 of 4) intron (NM_024969, intron 2 of 4) 73211 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 406-283 chr7 115386044 115386219 + 3 NA Intergenic Intergenic -154776 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 463-106 chr16 54857253 54857456 + 3 NA Intergenic L1MEc|LINE|L1 -9121 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 896-26 chr5 8111357 8111845 + 3 NA Intergenic Intergenic 242453 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 491-259 chr8 88015431 88015711 + 3 NA Intergenic Intergenic -141556 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 741-28 chr2 16269066 16269536 + 3 NA Intergenic MER21B|LTR|ERVL 218874 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 442-141 chr2 118549796 118550092 + 3 NA Intergenic Intergenic 53022 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 503-190 chr3 27233885 27234129 + 3 NA intron (NM_199347, intron 24 of 24) L1PA12|LINE|L1 -17484 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 533-79 chr17 61396789 61396993 + 3 NA intron (NR_125750, intron 1 of 2) CpG 2715 NR_125751 103689912 Hs.410998 NR_125749 ENSG00000267280 TBX2-AS1 - TBX2 antisense RNA 1 ncRNA 420-213 chr4 146217715 146217993 + 3 NA intron (NM_001354631, intron 3 of 7) L1MA9|LINE|L1 3316 NM_001371071 434-213 chr4 85266379 85266691 + 3 NA Intergenic HAL1|LINE|L1 -208615 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 506-192 chr3 153366542 153366797 + 3 NA Intergenic L1PA12|LINE|L1 -117826 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 283-334 chr4 107238975 107239143 + 3 NA Intergenic L1PB3|LINE|L1 -202746 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 576-139 chr5 112323826 112324018 + 3 NA intron (NM_001347887, intron 1 of 23) L1MEj|LINE|L1 95355 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 552-73 chr15 59818850 59819100 + 3 NA Intergenic Intergenic -129655 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 536-168 chr4 17181792 17182072 + 3 NA intron (NR_125919, intron 1 of 5) Tigger3b|DNA|TcMar-Tigger 4125 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 538-133 chr2 228918262 228918505 + 3 NA Intergenic MIRb|SINE|MIR -306988 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 611-156 chrX 76440166 76440430 + 3 NA Intergenic L1MA4A|LINE|L1 12588 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 333-153 chr14 66933403 66933580 + 3 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -255949 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 387-175 chr2 98422110 98422310 + 3 NA Intergenic L1M4b|LINE|L1 -22377 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 454-217 chr3 159409604 159409867 + 3 NA intron (NM_001197108, intron 1 of 6) L1MA3|LINE|L1 127089 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 292-454 chr8 142650702 142650884 + 3 NA Intergenic MER4-int|LTR|ERV1 12197 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 963-8 chr14 26245607 26246168 + 3 NA Intergenic Intergenic 307543 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 448-251 chr7 11421582 11421948 + 3 NA intron (NM_015204, intron 15 of 26) L1ME4a|LINE|L1 410433 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 633-8 chr1 238126033 238126439 + 3 NA Intergenic MER33|DNA|hAT-Charlie -235314 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 507-92 chr15 42353969 42354276 + 3 NA TTS (NM_198141) TTS (NM_198141) -5378 NM_024344 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 394-230 chr4 11010619 11010910 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -325996 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 805-11 chr13 92316868 92317252 + 3 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 35147 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 418-237 chr6 74208727 74208963 + 3 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 139394 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 591-67 chr2 63132019 63132430 + 3 NA intron (NR_148704, intron 18 of 18) L1MB3|LINE|L1 -12682 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 391-236 chr3 108028472 108028607 + 3 NA Intergenic L1MA5|LINE|L1 62549 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 846-44 chr5 149089123 149089684 + 3 NA intron (NR_122044, intron 2 of 2) L1MB8|LINE|L1 26086 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 526-199 chr5 92509354 92509555 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1061889 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 466-121 chr2 30592369 30592641 + 3 NA intron (NM_182551, intron 6 of 6) intron (NM_182551, intron 6 of 6) 145259 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 1029-9 chr18 71446220 71446838 + 3 NA Intergenic L1PA10|LINE|L1 132427 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 868-22 chr2 144783522 144784279 + 3 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 115933 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 345-216 chr18 21124003 21124252 + 3 NA Intergenic MER113|DNA|hAT-Charlie -12314 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 647-36 chr17 33869330 33869685 + 3 NA intron (NM_001094, intron 1 of 9) L1MB8|LINE|L1 287299 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 425-62 chr11 116161971 116162183 + 3 NA Intergenic MIRb|SINE|MIR -401877 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 448-299 chr9 86730847 86731021 + 3 NA Intergenic Intergenic 216572 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 356-140 chr14 44352082 44352320 + 3 NA Intergenic Intergenic 155082 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 820-57 chr7 27831547 27831948 + 3 NA 3' UTR (NM_175061, exon 5 of 5) 3' UTR (NM_175061, exon 5 of 5) 91652 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 853-17 chr2 153283003 153283399 + 3 NA Intergenic L1PA16|LINE|L1 195561 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 432-15 chr1 194583807 194584121 + 3 NA Intergenic Intergenic 1279219 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 705-86 chr5 158214476 158214834 + 3 NA Intergenic MER3|DNA|hAT-Charlie 195118 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 393-123 chr16 79722236 79722496 + 3 NA intron (NR_104663, intron 5 of 5) MIRb|SINE|MIR -48105 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 640-68 chr2 221735566 221735847 + 3 NA Intergenic Intergenic -161504 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 759-26 chr16 83698620 83698954 + 3 NA intron (NM_001220489, intron 9 of 12) MER58A|DNA|hAT-Charlie 105189 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 831-34 chr4 49099189 49099848 + 3 NA Intergenic (CATTC)n|Satellite|Satellite 112876 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 594-157 chr8 139271920 139272232 + 3 NA Intergenic LTR16A1|LTR|ERVL -358035 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 304-366 chr3 189219466 189219634 + 3 NA intron (NM_198485, intron 3 of 5) intron (NM_198485, intron 3 of 5) 21044 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 686-3 chr1 59034304 59034718 + 3 NA intron (NR_110626, intron 2 of 2) MLT1A0|LTR|ERVL-MaLR 14035 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 492-43 chr11 70766222 70766462 + 3 NA intron (NM_012309, intron 13 of 24) MLT1J|LTR|ERVL-MaLR -96448 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 719-56 chr4 71073882 71074317 + 3 NA Intergenic Intergenic 80450 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 573-59 chr13 66012255 66012612 + 3 NA Intergenic L1PA16|LINE|L1 -46004 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 898-16 chr18 2807797 2808321 + 3 NA Intergenic L1M4b|LINE|L1 -38947 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 603-20 chr10 109035015 109035443 + 3 NA Intergenic L1MDa|LINE|L1 888017 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 464-158 chr3 31991264 31991441 + 3 NA 3' UTR (NM_001137674, exon 2 of 2) 3' UTR (NM_001137674, exon 2 of 2) -9502 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 277-359 chr6 139915554 139915722 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -60681 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 398-380 chr9 29848589 29848821 + 3 NA Intergenic Intergenic 559749 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 455-284 chr8 118514454 118514743 + 3 NA intron (NM_001101676, intron 2 of 4) Charlie22a|DNA|hAT-Charlie -106403 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 374-270 chr4 13988032 13988222 + 3 NA Intergenic Intergenic -123841 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 869-41 chr5 7157338 7157729 + 3 NA Intergenic L1PA15-16|LINE|L1 111821 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 140-77 chr8 82834640 82834715 + 3 NA Intergenic Intergenic -77427 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 409-28 chr10 57564210 57564428 + 3 NA Intergenic L2a|LINE|L2 -259760 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 595-83 chr2 80115856 80116114 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 188767 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 596-67 chr15 25755990 25756295 + 3 NA intron (NM_024490, intron 2 of 20) MER101-int|LTR|ERV1 92683 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 668-25 chr14 35898608 35898933 + 3 NA Intergenic L1M2|LINE|L1 72432 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 733-51 chr3 45303937 45304260 + 3 NA Intergenic L1M4b|LINE|L1 -77811 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 727-64 chr5 74276425 74276922 + 3 NA Intergenic Intergenic 31652 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 886-22 chr21 30458399 30458860 + 3 NA Intergenic L2c|LINE|L2 18350 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 581-91 chr20 58119105 58119416 + 3 NA Intergenic L1MC3|LINE|L1 -31642 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 445-66 chr14 53289211 53289498 + 3 NA Intergenic MER21B|LTR|ERVL 136000 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 360-489 chr9 89807197 89807442 + 3 NA Intergenic Intergenic -162097 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 476-188 chr3 191710390 191710595 + 3 NA Intergenic L1MA4A|LINE|L1 249329 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 508-135 chr21 17994357 17994608 + 3 NA intron (NM_001204177, intron 1 of 4) L1MA4|LINE|L1 77142 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 1057-2 chr10 49448481 49449218 + 3 NA Intergenic L1MB8|LINE|L1 -52760 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 814-40 chr3 109515451 109515906 + 3 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -87150 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 636-52 chr15 60047589 60047894 + 3 NA Intergenic Charlie5|DNA|hAT-Charlie 43430 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 649-97 chr6 120895198 120895542 + 3 NA Intergenic L1ME3E|LINE|L1 439110 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 517-121 chr2 14680994 14681210 + 3 NA Intergenic Intergenic 48385 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 317-285 chr21 30480896 30481108 + 3 NA promoter-TSS (NM_181607) promoter-TSS (NM_181607) -635 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 838-40 chr8 122568900 122569452 + 3 NA promoter-TSS (NR_131202) promoter-TSS (NR_131202) -532 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 513-280 chr8 81887965 81888207 + 3 NA Intergenic Intergenic -45800 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 583-133 chr5 23077365 23077564 + 3 NA Intergenic Intergenic -224120 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 610-68 chr17 55888403 55888789 + 3 NA Intergenic Intergenic 137491 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 350-206 chr2 16704416 16704584 + 3 NA Intergenic Intergenic -38666 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 426-204 chr4 53608054 53608349 + 3 NA Intergenic L1PA15|LINE|L1 15245 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 362-381 chr6 128946674 128946851 + 3 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 63621 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 486-170 chr20 41961095 41961353 + 3 NA Intergenic LTR33|LTR|ERVL -342847 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 392-191 chr22 45042097 45042386 + 3 NA Intergenic Intergenic -32236 NM_001135862 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 875-4 chr12 13801468 13801883 + 3 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 178681 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 470-193 chr4 40019688 40019995 + 3 NA Intergenic Intergenic -37009 NM_018177 55728 Hs.391463 NM_018177 ENSG00000078177 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 976-22 chr6 142301798 142302293 + 3 NA promoter-TSS (NM_198569) promoter-TSS (NM_198569) 38 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 678-54 chr2 98326399 98326783 + 3 NA Intergenic AluJo|SINE|Alu -19564 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 443-178 chr20 42500057 42500306 + 3 NA intron (NM_133170, intron 7 of 31) L1MEd|LINE|L1 -185302 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 566-7 chr1 184756724 184757091 + 3 NA Intergenic Intergenic -2049 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 537-100 chr19 52060606 52060838 + 3 NA intron (NM_001369829, intron 7 of 7) HERV4_I-int|LTR|ERV1 -11884 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 450-177 chr21 32058074 32058278 + 3 NA Intergenic Intergenic 28119 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 904-21 chr18 2244114 2244423 + 3 NA Intergenic Intergenic 327237 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 487-61 chr11 84687749 84688091 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 33022 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 489-166 chr21 30473119 30473313 + 3 NA Intergenic Intergenic 7151 NM_181607 337882 Hs.61552 NM_181607 ENSG00000184351 KRTAP19-1 KAP19.1 keratin associated protein 19-1 protein-coding 663-82 chr5 6469670 6470049 + 3 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 21000 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 519-132 chr20 39626721 39626929 + 3 NA Intergenic Intergenic -377636 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 299-333 chr4 94016741 94016926 + 3 NA Intergenic L1MA3|LINE|L1 188080 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 665-111 chr8 134335358 134335784 + 3 NA Intergenic L1ME3G|LINE|L1 -262500 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 606-13 chr1 216619105 216619482 + 3 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 104136 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 850-23 chr2 133984962 133985529 + 3 NA Intergenic Intergenic -134690 NM_001371457 734-24 chr17 72826375 72826884 + 3 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -186157 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 777-29 chr18 56018620 56019200 + 3 NA intron (NR_148972, intron 8 of 8) intron (NR_148972, intron 8 of 8) -23368 NR_146511 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 534-234 chr7 46701813 46702156 + 3 NA Intergenic MLT2B4|LTR|ERVL -4862 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 447-77 chr14 62414591 62414905 + 3 NA Intergenic L1MD2|LINE|L1 -274775 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 817-43 chr5 43915396 43915949 + 3 NA Intergenic L1P2|LINE|L1 -312442 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 526-38 chr11 39952778 39953053 + 3 NA Intergenic Intergenic 340215 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 282-197 chr2 33905399 33905573 + 3 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -161740 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 482-250 chr7 54472954 54473172 + 3 NA Intergenic Intergenic -69262 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 474-91 chr15 27194829 27195082 + 3 NA intron (NM_001270873, intron 3 of 5) L1MDa|LINE|L1 -33636 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 293-326 chr5 6119685 6119828 + 3 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 217536 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 748-4 chr1 96247490 96247969 + 3 NA Intergenic MLT2A2|LTR|ERVL 126396 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 555-59 chr15 60732479 60732859 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 51100 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 474-159 chr2 214043749 214043958 + 3 NA intron (NR_047660, intron 12 of 14) (TA)n|Simple_repeat|Simple_repeat 285786 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 322-18 chr1 87912589 87912783 + 3 NA Intergenic L1MB7|LINE|L1 -541031 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 416-66 chr11 42619028 42619206 + 3 NA Intergenic Intergenic -365427 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 664-26 chr11 87523610 87523977 + 3 NA Intergenic LTR8B|LTR|ERV1 195618 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 588-145 chr7 50947504 50947836 + 3 NA Intergenic L1M2a|LINE|L1 -154217 NM_001371008 724-9 chr11 88419451 88419800 + 3 NA Intergenic Intergenic -81889 NM_001114173 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 617-82 chr3 55438932 55439316 + 3 NA Intergenic Intergenic 42274 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 511-104 chr19 24358790 24359095 + 3 NA Intergenic ALR/Alpha|Satellite|centr -195495 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 353-467 chr6 143026409 143026650 + 3 NA intron (NR_038987, intron 1 of 2) intron (NR_038987, intron 1 of 2) 11053 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 485-4 chr1 40115467 40115686 + 3 NA Intergenic L1PA16|LINE|L1 -18106 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 654-121 chr8 80293108 80293525 + 3 NA Intergenic L1MB7|LINE|L1 51927 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 490-59 chr11 108736923 108737145 + 3 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 71965 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 736 chr1 75973751 75974306 + 3 NA Intergenic Intergenic -37296 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 300-248 chr20 58218102 58218339 + 3 NA 3' UTR (NM_001304369, exon 4 of 4) 3' UTR (NM_001304369, exon 4 of 4) 10433 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 584-137 chr5 84023477 84023677 + 3 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -302722 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 382-123 chr15 81240250 81240556 + 3 NA intron (NM_001352686, intron 2 of 18) L1ME3E|LINE|L1 40927 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 541-222 chr7 124343808 124344138 + 3 NA intron (NR_110180, intron 2 of 3) L1PB1|LINE|L1 8123 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 390-13 chr1 118476650 118476881 + 3 NA Intergenic MER1B|DNA|hAT-Charlie -291537 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 430-220 chr4 104038734 104038986 + 3 NA Intergenic Intergenic -318875 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 368-420 chr7 46249643 46249803 + 3 NA Intergenic Intergenic -328451 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 556-32 chr11 28623270 28623513 + 3 NA Intergenic Intergenic -145843 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 587-55 chr16 34767255 34767583 + 3 NA Intergenic Intergenic -262930 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 407-153 chr2 146557858 146558142 + 3 NA Intergenic Intergenic -29057 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 807-34 chr20 7055995 7056531 + 3 NA Intergenic L1ME3A|LINE|L1 197939 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 696-68 chr3 5663129 5663455 + 3 NA Intergenic Intergenic -413037 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 515-238 chr6 102855438 102855736 + 3 NA Intergenic Intergenic 1456602 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 584-48 chr16 20257985 20258293 + 3 NA Intergenic Intergenic 69374 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 673-130 chrX 83732536 83732937 + 3 NA Intergenic L1MA4|LINE|L1 -128390 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 525-76 chr15 37328765 37329071 + 3 NA Intergenic Intergenic -227607 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 551-22 chr10 87971065 87971309 + 3 NA 3' UTR (NM_001304718, exon 9 of 9) 3' UTR (NM_001304718, exon 9 of 9) 107562 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 431-72 chr13 49874428 49874638 + 3 NA Intergenic LOR1b|LTR|ERV1 -15876 NR_003268 220429 Hs.448219 NR_003268 ENSG00000181358 CTAGE10P - CTAGE family member 10, pseudogene pseudo 775-41 chr2 49323604 49323994 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -169272 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 785-56 chr7 64380366 64380811 + 3 NA Intergenic BSR/Beta|Satellite|Satellite -53105 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 658-83 chr3 133224024 133224323 + 3 NA intron (NM_001282865, intron 1 of 3) (TTAT)n|Simple_repeat|Simple_repeat 32948 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 418-261 chr7 47006879 47007072 + 3 NA Intergenic L1MC2|LINE|L1 -309853 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 515-268 chr8 120368465 120368750 + 3 NA intron (NM_021110, intron 46 of 47) (A)n|Simple_repeat|Simple_repeat 76543 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 565-196 chr9 92533738 92534043 + 3 NA intron (NM_001197296, intron 1 of 9) L1MEh|LINE|L1 2202 NM_001197296 1842 Hs.117060 NM_001393 ENSG00000106823 ECM2 - extracellular matrix protein 2 protein-coding 511-93 chr17 70899958 70900237 + 3 NA Intergenic L1MC1|LINE|L1 302082 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 483-186 chr4 64069391 64069643 + 3 NA Intergenic Intergenic 339933 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 403-282 chr7 41120946 41121143 + 3 NA intron (NR_110832, intron 4 of 5) intron (NR_110832, intron 4 of 5) 19440 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 522-235 chr7 64975594 64975921 + 3 NA 3' UTR (NM_015852, exon 4 of 4) 3' UTR (NM_015852, exon 4 of 4) 15279 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 539-222 chrX 95780795 95781074 + 3 NA Intergenic L1MEc|LINE|L1 556968 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 456-25 chr1 239541747 239542002 + 3 NA intron (NM_001347716, intron 2 of 7) (CTTT)n|Simple_repeat|Simple_repeat -87199 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 398-115 chr15 25923273 25923457 + 3 NA intron (NR_040082, intron 1 of 4) L1PA13|LINE|L1 21005 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 961-4 chr18 28626065 28626605 + 3 NA Intergenic LTR37-int|LTR|ERV1 -449205 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 701-26 chr14 81951331 81951795 + 3 NA Intergenic LTR37A|LTR|ERV1 -208425 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 414-104 chr16 22777163 22777335 + 3 NA Intergenic L1MEd|LINE|L1 -36913 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 444-218 chr6 63985159 63985342 + 3 NA intron (NM_001292009, intron 34 of 43) MLT1C|LTR|ERVL-MaLR 178414 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 419-192 chr3 112427435 112427620 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 71945 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 1081-6 chr14 78829954 78830579 + 3 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -369716 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 702-5 chr1 80725802 80726276 + 3 NA Intergenic Intergenic 84752 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 433-195 chr4 33317749 33318007 + 3 NA Intergenic Intergenic 722015 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 1476-6 chr6 116298741 116299708 + 3 NA intron (NR_136524, intron 1 of 4) intron (NR_136524, intron 1 of 4) -19107 NM_003309 7259 Hs.458358 NM_003309 ENSG00000189241 TSPYL1 TSPYL TSPY like 1 protein-coding 502-49 chr11 43474515 43474764 + 3 NA intron (NM_018259, intron 21 of 23) L1MC5|LINE|L1 -85017 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 860-16 chr15 94804151 94804673 + 3 NA Intergenic Intergenic -50951 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 489-135 chr2 80184916 80185207 + 3 NA intron (NM_001282598, intron 7 of 17) MLT1F2|LTR|ERVL-MaLR 119691 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 356-288 chr20 41680763 41680934 + 3 NA Intergenic Intergenic -62471 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 1031-14 chr5 61892381 61893124 + 3 NA Intergenic L1MA4|LINE|L1 -157054 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 601-28 chr12 32618069 32618427 + 3 NA intron (NM_001370297, intron 8 of 14) intron (NM_001370297, intron 8 of 14) -60952 NM_001278465 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 502-116 chr17 71378340 71378727 + 3 NA Intergenic Intergenic -176354 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 671-68 chr3 168940873 168941211 + 3 NA Intergenic L1MCb|LINE|L1 39097 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 570-162 chr5 100960660 100960922 + 3 NA Intergenic L1MA1|LINE|L1 -57509 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 720-30 chr15 46133980 46134363 + 3 NA Intergenic L1M3c|LINE|L1 428976 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 918-17 chr20 48010212 48010677 + 3 NA Intergenic Intergenic -20327 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 754-36 chr19 28373773 28374100 + 3 NA Intergenic Intergenic -232752 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 1159-4 chr18 52928599 52929286 + 3 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -308159 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 556-225 chr8 87691187 87691423 + 3 NA Intergenic Intergenic 182710 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 443-291 chr8 75936226 75936498 + 3 NA Intergenic Intergenic 396394 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 629-108 chr6 10933879 10934172 + 3 NA intron (NR_125851, intron 2 of 2) intron (NR_125851, intron 2 of 2) 20064 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 320-591 chr9 70781600 70781797 + 3 NA intron (NM_001366143, intron 7 of 25) intron (NM_001366143, intron 7 of 25) 28386 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 519-64 chr14 78877552 78877806 + 3 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -322303 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 668-107 chr8 126731328 126731654 + 3 NA Intergenic L2|LINE|L2 -173013 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 543-247 chr8 115670271 115670641 + 3 NA Intergenic Intergenic -1481 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 641-91 chr4 132839734 132840052 + 3 NA Intergenic L1M2|LINE|L1 248804 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 600-125 chr8 63514699 63515048 + 3 NA Intergenic Intergenic 49024 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 1040-16 chr22 48932687 48933142 + 3 NA Intergenic L1MB8|LINE|L1 66144 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 378-316 chr4 108117825 108117987 + 3 NA intron (NM_001130713, intron 3 of 10) intron (NM_001130713, intron 3 of 10) 48891 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 429-27 chr1 220930597 220930782 + 3 NA Intergenic Intergenic -50549 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 269-390 chr7 136522609 136522772 + 3 NA Intergenic L1MB8|LINE|L1 -345962 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 1176-3 chr14 62497486 62498064 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -357802 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 463-36 chr10 38141021 38141187 + 3 NA intron (NM_001324258, intron 6 of 6) L1MD3|LINE|L1 -34567 NR_024524 100129055 Hs.148265 NR_024524 LOC100129055 - cyclin Y like 1 pseudogene pseudo 527-233 chr6 145161686 145161919 + 3 NA Intergenic Intergenic 525075 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 559-154 chr6 34116769 34117068 + 3 NA intron (NM_001256809, intron 1 of 8) L1ME3|LINE|L1 -6155 NM_001256812 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 475-205 chr4 47053933 47054149 + 3 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 22474 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 489-192 chr4 65448505 65448700 + 3 NA intron (NM_001281767, intron 5 of 16) AluSz|SINE|Alu 220886 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 306-284 chr20 48438143 48438296 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 78308 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 670-52 chr18 38109764 38109994 + 3 NA Intergenic L1ME2|LINE|L1 452744 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 269-377 chr7 26468390 26468569 + 3 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -69061 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 542-19 chr10 39063728 39064015 + 3 NA Intergenic ALR/Alpha|Satellite|centr 367275 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 641-8 chr10 32235424 32235859 + 3 NA Intergenic AluSx|SINE|Alu 111517 NM_025209 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 1156-4 chr19 37484157 37484778 + 3 NA exon (NM_001321992, exon 4 of 4) exon (NM_001321992, exon 4 of 4) 14896 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 853-24 chr3 184028083 184028462 + 3 NA Intergenic Intergenic -3272 NM_182537 200909 Hs.448004 NM_182537 ENSG00000186090 HTR3D 5HT3D 5-hydroxytryptamine receptor 3D protein-coding 340-536 chr8 87216363 87216607 + 3 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 350070 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 809-44 chr5 143662849 143663252 + 3 NA Intergenic Intergenic -16810 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 721-39 chr2 206375896 206376208 + 3 NA Intergenic L1MA7|LINE|L1 -67480 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 424-164 chr21 24508134 24508346 + 3 NA intron (NR_135519, intron 1 of 2) intron (NR_135519, intron 1 of 2) 79500 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 617-80 chr3 31492403 31492805 + 3 NA Intergenic Intergenic -40321 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 1319-4 chr3 59382710 59383576 + 3 NA Intergenic Intergenic 275354 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 516-245 chr8 38653276 38653635 + 3 NA Intergenic MER41A|LTR|ERV1 -52198 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 379-44 chr10 90171324 90171632 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -214105 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 769-21 chr17 62832111 62832583 + 3 NA intron (NR_135634, intron 1 of 1) L1MC3|LINE|L1 23845 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 476-119 chr18 9448350 9448653 + 3 NA Intergenic AluJr|SINE|Alu -27012 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 1138-7 chr14 76686858 76687478 + 3 NA Intergenic L1MD|LINE|L1 -74300 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 508-118 chr2 172363053 172363236 + 3 NA Intergenic L2a|LINE|L2 -64192 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 935-45 chrX 99416816 99417204 + 3 NA Intergenic L1PA15|LINE|L1 993263 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 513-53 chr11 103400290 103400584 + 3 NA intron (NM_001377, intron 84 of 88) MLT1K|LTR|ERVL-MaLR 291011 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 581-39 chr13 81901043 81901264 + 3 NA Intergenic Intergenic -674170 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 579-53 chr17 34784864 34785071 + 3 NA Intergenic Intergenic 176493 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 508-205 chr6 44843336 44843734 + 3 NA intron (NM_181356, intron 12 of 12) L1ME1|LINE|L1 -291654 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 642-4 chr1 166640614 166640894 + 3 NA Intergenic L1PA16|LINE|L1 36838 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 512-17 chr1 189134194 189134507 + 3 NA Intergenic Intergenic 1341660 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 631-48 chr16 71988647 71989044 + 3 NA intron (NM_181536, intron 4 of 29) MER34|LTR|ERV1 11133 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 872-5 chr1 188859521 188859909 + 3 NA Intergenic L1MA10|LINE|L1 1416087 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 301-493 chrX 34227337 34227517 + 3 NA Intergenic Intergenic -95097 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 687-126 chr9 74490836 74491165 + 3 NA intron (NR_125791, intron 1 of 4) L2a|LINE|L2 -6335 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 736-6 chr1 218503385 218503824 + 3 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) -6491 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 524-190 chr5 6252290 6252612 + 3 NA Intergenic Intergenic 84841 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 630-91 chr3 161832119 161832421 + 3 NA Intergenic MER21C|LTR|ERVL 335462 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 511-193 chr4 49073998 49074195 + 3 NA Intergenic L1P1|LINE|L1 87454 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 701-86 chr7 15619640 15620032 + 3 NA intron (NM_005924, intron 2 of 2) intron (NM_005924, intron 2 of 2) -48111 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 975-6 chr14 48472010 48472447 + 3 NA Intergenic L1MEd|LINE|L1 -677214 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 898-23 chr2 126133122 126133590 + 3 NA Intergenic (TTAAGTT)n|Simple_repeat|Simple_repeat -15371 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 535-176 chr3 191851875 191852201 + 3 NA Intergenic Intergenic -386592 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 709-16 chr11 85483377 85483778 + 3 NA intron (NM_001142699, intron 3 of 27) L1M3e|LINE|L1 143693 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 377-359 chr7 8072596 8072797 + 3 NA intron (NM_138426, intron 6 of 7) intron (NM_138426, intron 6 of 7) 103900 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 723-43 chr2 182207260 182207662 + 3 NA intron (NM_005019, intron 7 of 14) MSTA-int|LTR|ERVL-MaLR 34602 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 275-5 chr1 61620106 61620280 + 3 NA Intergenic Intergenic -34049 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 372-12 chr1 62378962 62379191 + 3 NA Intergenic Intergenic -57228 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 358-74 chr11 84004455 84004608 + 3 NA intron (NM_001142699, intron 11 of 27) L1MA4A|LINE|L1 268749 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 792-14 chr12 28369956 28370381 + 3 NA intron (NM_001330367, intron 7 of 11) THE1D-int|LTR|ERVL-MaLR -179430 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 914-12 chr17 77876199 77876717 + 3 NA Intergenic Intergenic 7629 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 658-23 chr10 120354179 120354466 + 3 NA TTS (NM_000982) TTS (NM_000982) 901 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 785-34 chr3 76274168 76274617 + 3 NA Intergenic Intergenic -488843 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 387-364 chr8 90385441 90385687 + 3 NA intron (NR_051989, intron 3 of 3) intron (NR_051989, intron 3 of 3) 164076 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 369-444 chr9 85240455 85240660 + 3 NA Intergenic L1ME3A|LINE|L1 501472 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 539-188 chr6 164531360 164531597 + 3 NA Intergenic Intergenic 290585 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 469-96 chr15 76069943 76070255 + 3 NA intron (NM_152335, intron 1 of 10) MLT1J|LTR|ERVL-MaLR 10114 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 720-51 chr2 238715179 238715559 + 3 NA Intergenic L1ME3G|LINE|L1 132538 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 404-73 chr12 17939116 17939298 + 3 NA Intergenic Intergenic 150986 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 895-36 chr5 109545211 109545606 + 3 NA Intergenic L1PA10|LINE|L1 -135434 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 209-137 chr18 42668991 42669154 + 3 NA intron (NR_046174, intron 7 of 9) intron (NR_046174, intron 7 of 9) 446613 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 649-34 chr17 32429403 32429888 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -14865 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 454-272 chr6 52183558 52183817 + 3 NA Intergenic Intergenic -2688 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 420-158 chr2 185401173 185401360 + 3 NA Intergenic L1MEg|LINE|L1 -234194 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 1380-3 chr6 40115861 40116601 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -181769 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 918-9 chr13 53019221 53019705 + 3 NA Intergenic Intergenic -9350 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 604-120 chr4 60763637 60763965 + 3 NA Intergenic Intergenic -158818 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 449-75 chr14 43338051 43338351 + 3 NA Intergenic MER57C2|LTR|ERV1 1169082 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 645-39 chr16 35437238 35437712 + 3 NA Intergenic MER57E1|LTR|ERV1 43121 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 475-54 chr12 16102551 16102729 + 3 NA Intergenic L1PB4|LINE|L1 175045 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 615-80 chr22 48869500 48869860 + 3 NA intron (NR_038944, intron 1 of 6) intron (NR_038944, intron 1 of 6) 2910 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 629-19 chr10 39294751 39295055 + 3 NA Intergenic ALR/Alpha|Satellite|centr 598307 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 281-414 chr7 50485615 50485786 + 3 NA intron (NM_001242888, intron 7 of 12) intron (NM_001242888, intron 7 of 12) -35294 NM_001287495 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 577-15 chr1 152963130 152963368 + 3 NA Intergenic Intergenic -7399 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 503-157 chr2 129265708 129265971 + 3 NA intron (NR_122042, intron 1 of 3) MIR3|SINE|MIR 8052 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 432-99 chr16 82325765 82326048 + 3 NA Intergenic Intergenic -155682 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 520-320 chr9 6812292 6812663 + 3 NA intron (NR_148680, intron 3 of 21) MER1B|DNA|hAT-Charlie 55127 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 1148 chr13 63607117 63607825 + 3 NA Intergenic L1M2|LINE|L1 -129964 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 604-155 chr7 104833048 104833340 + 3 NA intron (NM_199000, intron 2 of 2) MLT2A1|LTR|ERVL -29102 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 494-288 chr8 91629682 91629889 + 3 NA Intergenic L2c|LINE|L2 380466 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 348-576 chrX 144222871 144223053 + 3 NA Intergenic Intergenic 338891 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 380-281 chr4 92002155 92002315 + 3 NA Intergenic L1PA10|LINE|L1 275067 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 449-61 chr12 93057357 93057521 + 3 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) -116927 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 315-115 chr13 22731562 22731748 + 3 NA Intergenic Intergenic 166526 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 576-156 chr7 9793921 9794201 + 3 NA Intergenic Intergenic 159791 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 455-204 chr5 2281686 2281912 + 3 NA Intergenic Intergenic 30402 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 394-43 chr10 52610792 52611050 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -140388 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 496-304 chr9 32184985 32185276 + 3 NA Intergenic MER92-int|LTR|ERV1 -199473 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 574-21 chr11 23282896 23283130 + 3 NA Intergenic Intergenic 136177 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 519-46 chr12 17087826 17088181 + 3 NA Intergenic L1MEc|LINE|L1 99256 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 373-45 chr10 21715496 21715752 + 3 NA intron (NM_001195626, intron 14 of 22) intron (NM_001195626, intron 14 of 22) 181452 NM_001195630 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 1115-15 chr8 19708046 19708857 + 3 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) -25690 NR_024040 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 666-96 chr5 116942876 116943325 + 3 NA Intergenic Intergenic -180891 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 394-57 chr11 28188925 28189209 + 3 NA intron (NM_001113528, intron 3 of 6) intron (NM_001113528, intron 3 of 6) 80679 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 527-265 chr8 94978263 94978459 + 3 NA intron (NR_148903, intron 3 of 4) MER21C|LTR|ERVL 28801 NR_148907 137682 Hs.435500 NM_152416 ENSG00000156170 NDUFAF6 C8orf38|MC1DN17 NADH:ubiquinone oxidoreductase complex assembly factor 6 protein-coding 670-66 chr2 125644403 125644812 + 3 NA Intergenic Intergenic 473378 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 362-64 chr10 59129073 59129231 + 3 NA Intergenic L2|LINE|L2 47312 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 302-322 chr4 59159679 59159875 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 146204 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 603-84 chr2 55997146 55997358 + 3 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) 3543 NR_030623 100126319 NR_030623 ENSG00000211520 MIR216B MIRN216B|mir-216b microRNA 216b ncRNA 413-134 chr2 57219537 57219735 + 3 NA Intergenic Intergenic -688015 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 481 chr1 24317644 24317832 + 3 NA Intergenic L2a|LINE|L2 -1619 NM_198174 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 603-13 chr10 74578583 74578880 + 3 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -49407 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 386-53 chr11 58368124 58368398 + 3 NA Intergenic Intergenic -9192 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 685-49 chr2 136489519 136489867 + 3 NA Intergenic Intergenic -275852 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 412-186 chr20 45986865 45987122 + 3 NA Intergenic MIR|SINE|MIR -14790 NM_022095 63925 Hs.174193 NM_022095 ENSG00000198026 ZNF335 MCPH10|NIF-1|NIF1|NIF2 zinc finger protein 335 protein-coding 572-172 chr8 114134578 114134788 + 3 NA Intergenic L1MA4A|LINE|L1 -697744 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 547-148 chr3 165305395 165305658 + 3 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 98566 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 663-70 chr3 118082792 118083090 + 3 NA Intergenic Intergenic -392016 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 378-43 chr1 236989860 236990019 + 3 NA Intergenic L1MCc|LINE|L1 14502 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 758-36 chr2 19830943 19831426 + 3 NA Intergenic Intergenic -37670 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 418-231 chr5 179213314 179213478 + 3 NA intron (NM_014244, intron 3 of 21) L2a|LINE|L2 132065 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 595-80 chr2 53080338 53080734 + 3 NA Intergenic L1MA6|LINE|L1 -377921 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 206-274 chr8 130313193 130313274 + 3 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -16700 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 471-245 chr7 9508167 9508424 + 3 NA Intergenic Intergenic -125975 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 856-42 chr6 79187894 79188390 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -45532 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 532-113 chr2 21717704 21717973 + 3 NA Intergenic Intergenic -7186 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 657-57 chr2 182591648 182592039 + 3 NA Intergenic LTR82B|LTR|ERVL -68998 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 249-340 chr5 114173696 114173840 + 3 NA Intergenic Intergenic -188302 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 376-133 chr16 59079340 59079591 + 3 NA Intergenic L1MEc|LINE|L1 -345149 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 844-27 chr19 30331575 30332237 + 3 NA Intergenic L2a|LINE|L2 -40478 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 691-64 chr5 16098793 16099155 + 3 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 80817 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 867-39 chr5 111623834 111624373 + 3 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -111506 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 418-108 chr2 22559323 22559571 + 3 NA Intergenic Intergenic 22968 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 629-17 chr10 25361632 25362042 + 3 NA intron (NM_020752, intron 2 of 10) L1MB2|LINE|L1 -185561 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 680-123 chr9 96841883 96842333 + 3 NA intron (NM_001346995, intron 2 of 3) L1MD2|LINE|L1 12406 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 555-79 chr19 56423881 56424178 + 3 NA exon (NM_001159861, exon 5 of 5) exon (NM_001159861, exon 5 of 5) 19697 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 603-107 chr3 28094013 28094281 + 3 NA Intergenic LTR8A|LTR|ERV1 -147472 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 661-50 chr2 126447657 126448001 + 3 NA Intergenic Intergenic -208106 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 480-110 chr17 57614866 57615062 + 3 NA intron (NM_001322250, intron 8 of 13) intron (NM_001322250, intron 8 of 13) -6552 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 298-423 chr7 29651327 29651533 + 3 NA intron (NR_024278, intron 1 of 1) intron (NR_024278, intron 1 of 1) 29398 NR_039600 100616354 NR_039600 ENSG00000212024 MIR550A3 mir-550a-3 microRNA 550a-3 ncRNA 534-261 chr8 100587200 100587474 + 3 NA intron (NM_152628, intron 11 of 13) Tigger4|DNA|TcMar-Tigger -27578 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 745-20 chr18 8077077 8077446 + 3 NA intron (NM_002845, intron 9 of 30) intron (NM_002845, intron 9 of 30) 289773 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 480-33 chr10 61376174 61376440 + 3 NA Intergenic Ricksha_c|DNA|MULE-MuDR -76332 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 436-67 chr12 51123107 51123284 + 3 NA intron (NM_005653, intron 1 of 14) intron (NM_005653, intron 1 of 14) -39599 NR_045072 81566 Hs.524425 NM_030809 ENSG00000110925 CSRNP2 C12orf2|C12orf22|FAM130A1|PPP1R72|TAIP-12 cysteine and serine rich nuclear protein 2 protein-coding 555-109 chr20 12460483 12460799 + 3 NA Intergenic Intergenic 476322 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 534-15 chr1 189797073 189797401 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie 678773 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 405-136 chr2 56558078 56558366 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 -372452 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 608-46 chr15 57066326 57066628 + 3 NA intron (NM_207038, intron 4 of 19) intron (NM_207038, intron 4 of 19) 147032 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 734-8 chr1 247244016 247244544 + 3 NA Intergenic AluSp|SINE|Alu -11792 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 469-134 chr2 82114832 82115092 + 3 NA Intergenic Intergenic -648016 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 263-324 chr5 56796860 56797016 + 3 NA Intergenic MamTip3|DNA|hAT-Tip100 -18611 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 656-6 chr1 87931458 87931864 + 3 NA Intergenic Intergenic -560006 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 529-124 chr2 228934182 228934424 + 3 NA Intergenic L1M4c|LINE|L1 297789 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 531-125 chr2 191967156 191967467 + 3 NA intron (NM_001305134, intron 7 of 9) intron (NM_001305134, intron 7 of 9) -120223 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 615-132 chr8 28498752 28499100 + 3 NA intron (NM_145866, intron 1 of 6) intron (NM_145866, intron 1 of 6) 4714 NM_017412 7976 Hs.40735 NM_017412 ENSG00000104290 FZD3 Fz-3 frizzled class receptor 3 protein-coding 311-289 chr2 238673164 238673370 + 3 NA Intergenic L1ME3|LINE|L1 -117768 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 1266-2 chr2 41977058 41977756 + 3 NA Intergenic L1ME3|LINE|L1 -23601 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 776-34 chr3 7432260 7432629 + 3 NA intron (NM_000844, intron 5 of 9) AluSx|SINE|Alu 102840 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 368-386 chr6 6000549 6000713 + 3 NA intron (NM_001278710, intron 3 of 3) intron (NM_001278710, intron 3 of 3) 3413 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 434-247 chr6 86353327 86353512 + 3 NA Intergenic Intergenic -584109 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 710-36 chr17 72663561 72663953 + 3 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -23285 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 364-27 chr1 173367593 173367718 + 3 NA intron (NR_037845, intron 2 of 2) Arthur1B|DNA|hAT-Tip100 93707 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 238-183 chr2 133507785 133507956 + 3 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 60593 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 368-290 chr3 53475954 53476164 + 3 NA Intergenic L1ME2z|LINE|L1 -18552 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 1060-9 chr15 94925570 94926242 + 3 NA Intergenic Intergenic 70543 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 469-187 chr3 116627879 116628065 + 3 NA Intergenic L1MA3|LINE|L1 75499 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 166 chr1 78861083 78861168 + 3 NA Intergenic L1MC3|LINE|L1 145605 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 331-33 chr1 208276444 208276668 + 3 NA Intergenic Intergenic -32172 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 327-242 chr2 21806064 21806277 + 3 NA Intergenic MIR|SINE|MIR -95518 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 456-297 chr7 34048492 34048673 + 3 NA intron (NM_133468, intron 8 of 15) intron (NM_133468, intron 8 of 15) 143043 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 592-103 chr22 40479720 40480064 + 3 NA intron (NM_020831, intron 3 of 14) intron (NM_020831, intron 3 of 14) -16452 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 596-156 chr7 108859554 108859874 + 3 NA Intergenic Intergenic 24873 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 543-257 chr8 139526427 139526727 + 3 NA Intergenic Intergenic 176546 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 857-14 chr11 116664987 116665557 + 3 NA Intergenic L1M3f|LINE|L1 25850 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 423-221 chr5 45162765 45163029 + 3 NA Intergenic Intergenic 353950 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 598-63 chr19 28775078 28775299 + 3 NA Intergenic L1PREC2|LINE|L1 -47494 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 340-43 chr10 32956006 32956222 + 3 NA intron (NM_002211, intron 1 of 15) intron (NM_002211, intron 1 of 15) 1780 NM_133376 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 825-59 chrX 10947456 10947849 + 3 NA Intergenic Intergenic -113969 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 576-122 chr4 94859847 94860311 + 3 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 102124 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 544-145 chr3 45276445 45276860 + 3 NA Intergenic L1MA4|LINE|L1 -50365 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 517-261 chr8 67738520 67738837 + 3 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 7682 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 415-89 chr16 48899134 48899316 + 3 NA Intergenic Intergenic -289045 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 462-27 chr10 46540204 46540492 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 15723 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 444-136 chr20 15343620 15343916 + 3 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 146928 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 459-116 chr18 42985172 42985401 + 3 NA intron (NM_001272077, intron 2 of 5) L1ME3B|LINE|L1 130399 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 360-389 chr5 178881212 178881432 + 3 NA intron (NM_058230, intron 4 of 4) MER20|DNA|hAT-Charlie -14591 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 143-83 chr8 73053771 73053849 + 3 NA Intergenic HAL1ME|LINE|L1 39362 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 439-221 chr5 4396595 4396867 + 3 NA Intergenic Intergenic -376750 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 689-35 chr14 63447054 63447428 + 3 NA intron (NR_104104, intron 2 of 12) Tigger1|DNA|TcMar-Tigger 60997 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 687-124 chr8 134218118 134218644 + 3 NA Intergenic L1PB3|LINE|L1 331885 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 461-117 chr19 57925878 57926088 + 3 NA 3' UTR (NM_001317030, exon 2 of 4) 3' UTR (NM_001317030, exon 2 of 4) -9391 NM_001297734 147687 Hs.567710 NM_152475 ENSG00000173480 ZNF417 - zinc finger protein 417 protein-coding 445-183 chr3 176344627 176344914 + 3 NA Intergenic L1MA4A|LINE|L1 100219 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 429-308 chr8 119329536 119329793 + 3 NA Intergenic Intergenic 4493 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 282-69 chr11 38317249 38317374 + 3 NA Intergenic L1MA3|LINE|L1 329045 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 503-87 chr13 56422533 56422708 + 3 NA Intergenic Intergenic -718298 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 447-18 chr1 231156549 231156722 + 3 NA Intergenic AluJr|SINE|Alu -6293 NM_001300889 440730 Hs.655089 NM_001004342 ENSG00000119283 TRIM67 TNL tripartite motif containing 67 protein-coding 524-281 chr9 84505612 84505835 + 3 NA Intergenic Intergenic -136996 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 329-84 chr10 122755865 122756061 + 3 NA promoter-TSS (NR_003570) promoter-TSS (NR_003570) -731 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 439-123 chr2 22246973 22247191 + 3 NA Intergenic Intergenic -289397 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 516-172 chr3 66648615 66648788 + 3 NA Intergenic Intergenic 89635 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 502-243 chr7 49198618 49198849 + 3 NA Intergenic (TAGATA)n|Simple_repeat|Simple_repeat 274186 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 605-97 chr6 23899384 23899762 + 3 NA Intergenic L1MC3|LINE|L1 -226642 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 655-62 chr2 141915661 141916034 + 3 NA intron (NM_018557, intron 1 of 90) L1PA16|LINE|L1 215854 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 394-150 chr19 51964555 51964799 + 3 NA 3' UTR (NM_021632, exon 5 of 5) 3' UTR (NM_021632, exon 5 of 5) 15543 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 542-179 chr5 124581464 124581749 + 3 NA Intergenic Intergenic -143086 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 790-24 chr2 114238009 114238387 + 3 NA Intergenic MIRb|SINE|MIR -204443 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 590-54 chr14 81835737 81836090 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -92775 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 648-70 chr2 97729578 97729911 + 3 NA intron (NM_001079, intron 4 of 13) intron (NM_001079, intron 4 of 13) -4662 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 377-398 chr8 68918968 68919185 + 3 NA intron (NR_039986, intron 4 of 4) intron (NR_039986, intron 4 of 4) 185114 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 406-193 chr3 112187510 112187701 + 3 NA intron (NM_001320531, intron 19 of 27).2 intron (NM_001320531, intron 19 of 27).2 54182 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 537-75 chr15 68915680 68915909 + 3 NA Intergenic L1MB5|LINE|L1 -14706 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 468-246 chr5 43940530 43940879 + 3 NA Intergenic L1MA1|LINE|L1 -337474 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 519-21 chr10 25688855 25689082 + 3 NA intron (NR_108067, intron 2 of 4) (TATAATA)n|Simple_repeat|Simple_repeat 37256 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 312-502 chr7 138012631 138012799 + 3 NA Intergenic LOR1-int|LTR|ERV1 -10629 NM_001253775 64764 Hs.490273 NM_194071 ENSG00000182158 CREB3L2 BBF2H7 cAMP responsive element binding protein 3 like 2 protein-coding 620-63 chr2 59325586 59326006 + 3 NA Intergenic L1ME4b|LINE|L1 108088 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 651-51 chr17 66162547 66162832 + 3 NA intron (NM_001353129, intron 4 of 26) L1ME3|LINE|L1 29203 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 517-13 chr1 172650078 172650282 + 3 NA Intergenic Intergenic -8828 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 443-169 chr2 229690094 229690304 + 3 NA intron (NM_139072, intron 1 of 12) MER5B|DNA|hAT-Charlie 24356 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 364-197 chr2 17236447 17236604 + 3 NA Intergenic Intergenic 281915 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 340-122 chr12 129053197 129053344 + 3 NA Intergenic Intergenic -56420 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 708-2 chr1 72773041 72773573 + 3 NA Intergenic Intergenic -490768 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 343-296 chr20 14321880 14321998 + 3 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 15673 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 340-414 chr4 107471247 107471492 + 3 NA Intergenic Intergenic 248865 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 436-89 chr14 86113580 86113785 + 3 NA intron (NR_110155, intron 2 of 3) L1ME1|LINE|L1 179004 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 531-66 chr15 36629127 36629495 + 3 NA intron (NM_001290232, intron 1 of 10) intron (NM_001290232, intron 1 of 10) 34434 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 557-163 chr5 107097913 107098316 + 3 NA Intergenic MIR|SINE|MIR -87100 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 527-206 chr5 41657177 41657511 + 3 NA Intergenic MER21C|LTR|ERVL -146743 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 477-180 chr20 53372442 53372626 + 3 NA intron (NM_173485, intron 2 of 2) (GGAA)n|Simple_repeat|Simple_repeat -180236 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 298-379 chr5 126866224 126866416 + 3 NA Intergenic AluSx1|SINE|Alu 89184 NM_005573 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 871-3 chr11 36132456 36133076 + 3 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -54865 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 511-204 chr5 26398688 26398989 + 3 NA Intergenic MLT2A2|LTR|ERVL 639748 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 304-414 chr5 45676786 45677003 + 3 NA intron (NM_021072, intron 1 of 7) (TATC)n|Simple_repeat|Simple_repeat 19486 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 241-202 chr2 151982731 151982891 + 3 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) -8833 NM_001320722 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 947-21 chr4 100441770 100442265 + 3 NA intron (NM_001159694, intron 4 of 10) L1MA9|LINE|L1 -46770 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 580-148 chr5 30998702 30999003 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -194834 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 670-109 chr7 34115774 34116231 + 3 NA intron (NM_133468, intron 14 of 15) L1MB8|LINE|L1 210463 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 507-199 chr5 67200904 67201206 + 3 NA Intergenic Intergenic -4256 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 207-123 chr19 53119601 53119719 + 3 NA intron (NM_001164309, intron 2 of 3) L1M2|LINE|L1 10049 NM_001352135 55786 Hs.147765 NM_018355 ENSG00000170954 ZNF415 Pact|ZfLp zinc finger protein 415 protein-coding 692-32 chr16 12783864 12784225 + 3 NA intron (NM_018340, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR 19843 NM_001099455 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 464-217 chr6 68492420 68492594 + 3 NA Intergenic LTR16B2|LTR|ERVL 141817 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 581-23 chr11 14682556 14682932 + 3 NA intron (NM_000922, intron 1 of 15) L1MD|LINE|L1 38940 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 347-137 chr14 71903075 71903219 + 3 NA Intergenic Intergenic -29024 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 196-63 chr12 129475136 129475243 + 3 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 266588 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 882-11 chr12 34417664 34418100 + 3 NA Intergenic ALR/Alpha|Satellite|centr 395386 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 554-113 chr2 60125458 60125783 + 3 NA Intergenic Intergenic 257416 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 778-44 chr22 34807154 34807623 + 3 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 190528 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 315-167 chr16 17677147 17677338 + 3 NA Intergenic L1MB7|LINE|L1 -206282 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 435-236 chr8 62391269 62391470 + 3 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 142515 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 441-226 chr6 68994088 68994304 + 3 NA intron (NM_001704, intron 11 of 31) AmnSINE1|SINE|5S-Deu-L2 358914 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 506-137 chr2 56419974 56420159 + 3 NA Intergenic L1PA16|LINE|L1 -234296 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 398-355 chr8 86265240 86265462 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -34970 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 456-181 chr20 58217417 58217668 + 3 NA 3' UTR (NM_001304369, exon 4 of 4) 3' UTR (NM_001304369, exon 4 of 4) 11111 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 385-89 chr13 111869858 111870124 + 3 NA Intergenic L1ME4b|LINE|L1 -23387 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 473-207 chr5 3283460 3283722 + 3 NA Intergenic Intergenic 105756 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 707-86 chr5 152923583 152924102 + 3 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 48507 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 982-3 chr1 238715429 238715904 + 3 NA Intergenic Intergenic -229649 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 549-155 chr4 129049633 129049871 + 3 NA intron (NM_001300898, intron 2 of 5) L1PA8|LINE|L1 43787 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 460-241 chr5 89653033 89653218 + 3 NA Intergenic L1MA1|LINE|L1 363595 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 645-121 chr8 79445899 79446216 + 3 NA Intergenic Intergenic 113869 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 448-121 chr2 133486376 133486694 + 3 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 81928 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 684-19 chr11 2231089 2231449 + 3 NA Intergenic L1M3c|LINE|L1 39683 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 494-44 chr11 111075155 111075453 + 3 NA Intergenic Intergenic 22014 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 613-92 chr4 32854325 32854642 + 3 NA Intergenic L1MC4|LINE|L1 503445 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 387-56 chr11 37961593 37961793 + 3 NA Intergenic L1MC3|LINE|L1 23092 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 499-195 chr5 13577666 13577854 + 3 NA Intergenic Intergenic 366720 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 436-147 chr2 167053303 167053488 + 3 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 87560 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 534-55 chr11 122484152 122484433 + 3 NA Intergenic L1MA2|LINE|L1 -61421 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 276-414 chr6 131645630 131645722 + 3 NA intron (NR_133007, intron 2 of 23) HAL1|LINE|L1 8374 NR_133007 5169 Hs.486489 NM_005021 ENSG00000154269 ENPP3 B10|CD203c|NPP3|PD-IBETA|PDNP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 protein-coding 1053-6 chr14 49264748 49265375 + 3 NA Intergenic L2b|LINE|L2 321319 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 609-133 chr8 20828764 20829073 + 3 NA Intergenic Intergenic -124715 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 420-106 chr18 7466756 7466926 + 3 NA Intergenic Intergenic -5835 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 692-49 chr2 138384495 138384836 + 3 NA Intergenic Intergenic -117105 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 464-33 chr11 42933249 42933446 + 3 NA Intergenic Intergenic 336022 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 500-26 chr10 44475360 44475560 + 3 NA Intergenic L1MDb|LINE|L1 -90363 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 423-234 chr5 129464169 129464425 + 3 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -3608 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 470-69 chr14 45859546 45859768 + 3 NA Intergenic L1PREC2|LINE|L1 -144055 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 529-142 chr3 109853341 109853535 + 3 NA Intergenic Intergenic 250610 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 373-278 chr4 30821982 30822154 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 101699 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 298-42 chr10 46323741 46323948 + 3 NA intron (NM_001278688, intron 16 of 16) MER57A-int|LTR|ERV1 36847 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000274209 ANTXRL - ANTXR like protein-coding 488-24 chr10 39308778 39309046 + 3 NA Intergenic ALR/Alpha|Satellite|centr 612316 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 371-393 chr8 128410632 128410834 + 3 NA intron (NR_121672, intron 6 of 7) intron (NR_121672, intron 6 of 7) 153946 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 783-59 chr5 16306213 16306582 + 3 NA Intergenic Intergenic 126156 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 379-266 chr5 72048216 72048454 + 3 NA Intergenic Intergenic -59140 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 495-199 chr5 64898314 64898546 + 3 NA intron (NM_005869, intron 11 of 13) intron (NM_005869, intron 11 of 13) 129500 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 493-192 chr3 5672595 5672842 + 3 NA Intergenic Intergenic -422463 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 545-4 chr1 41296319 41296526 + 3 NA Intergenic MIRc|SINE|MIR -54116 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 382-340 chr5 130174016 130174166 + 3 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 269626 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 367-157 chr17 12696462 12696627 + 3 NA intron (NR_104605, intron 2 of 2) L1MB3|LINE|L1 9591 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 470-174 chr3 64899495 64899800 + 3 NA intron (NR_038264, intron 4 of 5) L2c|LINE|L2 -211647 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 549-123 chr2 217854293 217854542 + 3 NA intron (NM_001308023, intron 15 of 29) intron (NM_001308023, intron 15 of 29) -20684 NR_145792 109623482 NR_145792 SNORA115 - small nucleolar RNA, H/ACA box 115 snoRNA 422-263 chr6 91415027 91415255 + 3 NA Intergenic Intergenic -106519 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 522-254 chr8 111079660 111079910 + 3 NA Intergenic L1MA2|LINE|L1 -52352 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 593-124 chr6 124920772 124921032 + 3 NA intron (NR_026876, intron 5 of 6) THE1B-int|LTR|ERVL-MaLR -41643 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 585-83 chr2 193619563 193619978 + 3 NA Intergenic L1MEf|LINE|L1 -724499 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 420-120 chr19 58212128 58212394 + 3 NA exon (NM_001278734, exon 8 of 8) exon (NM_001278734, exon 8 of 8) -16420 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 425-314 chr8 122977030 122977255 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 48630 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 494-162 chr22 49691719 49691960 + 3 NA Intergenic L1MD3|LINE|L1 -34320 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 373-403 chr8 73965323 73965529 + 3 NA intron (NM_001204858, intron 1 of 4) L1ME2z|LINE|L1 6482 NM_001204861 6921 Hs.533437 NM_005648 ENSG00000154582 ELOC SIII|TCEB1 elongin C protein-coding 514-274 chr7 62920799 62921029 + 3 NA Intergenic ALR/Alpha|Satellite|centr 383142 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 408-312 chr7 8692345 8692560 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 258843 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 703-104 chr9 22843931 22844309 + 3 NA Intergenic Intergenic 197920 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 407-78 chr14 45972358 45972550 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -91705 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 336-560 chr8 133705347 133705507 + 3 NA Intergenic Intergenic -21361 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 327-104 chr11 134699200 134699405 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -36643 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 601-31 chr12 65734642 65734949 + 3 NA Intergenic Intergenic -89665 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 639-72 chr20 20899638 20900060 + 3 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat -187205 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 282-403 chr6 72850673 72850792 + 3 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 117021 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 323-219 chr19 37321919 37322153 + 3 NA intron (NM_001329775, intron 1 of 5) Charlie4a|DNA|hAT-Charlie 4154 NR_148546 284459 Hs.640243 NM_181786 ENSG00000181666 ZNF875 HKR1 zinc finger protein 875 protein-coding 555-67 chr16 73448758 73448989 + 3 NA Intergenic HAL1b|LINE|L1 62068 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 506-283 chr8 87514163 87514435 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 359716 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 463-239 chr5 118318305 118318491 + 3 NA Intergenic Intergenic 35824 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 527-100 chr16 3404768 3405002 + 3 NA 3' UTR (NM_001347870, exon 3 of 3) 3' UTR (NM_001347870, exon 3 of 3) 3670 NM_001347870 7727 Hs.155204 NM_003450 ENSG00000103343 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 375-337 chr5 141143173 141143346 + 3 NA Intergenic L1ME3D|LINE|L1 -6763 NM_018939 56130 Hs.283085 NM_018939 ENSG00000113211 PCDHB6 PCDH-BETA6 protocadherin beta 6 protein-coding 659-35 chr16 48081889 48082194 + 3 NA TTS (NM_033226) TTS (NM_033226) 64729 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 655-45 chr16 76662320 76662628 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger 27476 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 342-106 chr12 15888252 15888453 + 3 NA intron (NM_007178, intron 2 of 9) L2c|LINE|L2 5965 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 304-437 chr5 145633924 145634102 + 3 NA Intergenic Intergenic 201329 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 519-71 chr16 11268051 11268285 + 3 NA intron (NM_005425, intron 1 of 1) intron (NM_005425, intron 1 of 1) 1157 NM_005425 7142 Hs.513349 NM_005425 ENSG00000178279 TNP2 TP2 transition protein 2 protein-coding 315-118 chr13 67837185 67837358 + 3 NA Intergenic L1M3c|LINE|L1 464884 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 875-10 chr15 68031575 68032186 + 3 NA Intergenic Intergenic -22299 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 754-69 chr5 143700980 143701454 + 3 NA Intergenic Intergenic 21357 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 469-111 chr17 60851043 60851245 + 3 NA intron (NM_001330413, intron 7 of 25) L1MC1|LINE|L1 173293 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 488-277 chr8 128483176 128483426 + 3 NA intron (NR_121672, intron 2 of 7) L2a|LINE|L2 81378 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 755-31 chr19 52322262 52322565 + 3 NA exon (NM_001297624, exon 4 of 4) exon (NM_001297624, exon 4 of 4) -13830 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 792-26 chr15 95712353 95712769 + 3 NA Intergenic Intergenic 279468 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 407-61 chr12 17410746 17411068 + 3 NA Intergenic ERVL47-int|LTR|ERVL 178171 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 513-212 chr4 155694811 155695095 + 3 NA intron (NM_000856, intron 3 of 10) intron (NM_000856, intron 3 of 10) 27291 NM_001130684 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 652-36 chr14 44718208 44718458 + 3 NA Intergenic Intergenic 80793 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 585-162 chr8 115051975 115052350 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 615851 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 308-93 chr11 116583091 116583217 + 3 NA Intergenic ORSL|DNA|hAT-Tip100 -56268 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 546-167 chr4 33703908 33704211 + 3 NA Intergenic L1MB1|LINE|L1 335834 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 763-48 chr4 75706737 75707068 + 3 NA Intergenic Intergenic -17620 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 419-262 chr6 159336323 159336498 + 3 NA Intergenic Intergenic -47121 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 552-229 chr9 115040501 115040797 + 3 NA intron (NM_002160, intron 19 of 27) MIRb|SINE|MIR 77508 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 452-274 chr8 121304817 121305109 + 3 NA Intergenic Intergenic -334383 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 416-20 chr1 202787201 202787352 + 3 NA intron (NM_001314042, intron 1 of 27) AluJr|SINE|Alu 22194 NM_006618 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 319-342 chr3 117803342 117803528 + 3 NA Intergenic Intergenic -112510 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 518-287 chr7 148862999 148863215 + 3 NA intron (NM_001203247, intron 1 of 19) AluSz6|SINE|Alu 20378 NM_001203249 2146 Hs.444082 NM_004456 ENSG00000106462 EZH2 ENX-1|ENX1|EZH2b|KMT6|KMT6A|WVS|WVS2 enhancer of zeste 2 polycomb repressive complex 2 subunit protein-coding 394-224 chr3 153959560 153959783 + 3 NA Intergenic Intergenic -161332 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 454-50 chr11 15529579 15529825 + 3 NA Intergenic AluSz|SINE|Alu -114183 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 987-10 chr4 112447430 112447960 + 3 NA Intergenic Intergenic -67684 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 645-80 chr3 108703169 108703561 + 3 NA Intergenic L1MA2|LINE|L1 53918 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 375-186 chr18 76011274 76011441 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -111641 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 489-20 chr1 222367969 222368258 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR 179991 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 486-49 chr11 56986035 56986409 + 3 NA Intergenic Tigger1a_Art|DNA|TcMar-Tigger -2692 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 510-226 chr5 41580638 41580830 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -70133 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 1059-4 chr12 34408031 34408548 + 3 NA Intergenic ALR/Alpha|Satellite|centr 385793 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 179-76 chr4 30562422 30562503 + 3 NA Intergenic Intergenic -157907 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 751-45 chr3 62380579 62380905 + 3 NA Intergenic L1ME3A|LINE|L1 -7192 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 558-45 chr12 105790124 105790324 + 3 NA Intergenic HAL1M8|LINE|L1 83450 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 437-276 chr8 96748263 96748483 + 3 NA intron (NM_016134, intron 1 of 7) intron (NM_016134, intron 1 of 7) 103131 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 658-11 chr10 6509477 6509834 + 3 NA intron (NM_001282644, intron 3 of 17) AluSx1|SINE|Alu 70621 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 394-61 chr11 70646710 70646973 + 3 NA intron (NM_133266, intron 2 of 10) AluSx1|SINE|Alu 15000 NM_133266 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 523-82 chr14 77608293 77608602 + 3 NA intron (NM_004863, intron 1 of 11) L1ME3Cz|LINE|L1 8320 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 298-340 chr4 122630061 122630208 + 3 NA intron (NR_104126, intron 7 of 10) intron (NR_104126, intron 7 of 10) -9068 NM_021803 59067 Hs.567559 NM_021803 ENSG00000138684 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 485-185 chr3 97404346 97404544 + 3 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -35162 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 671-84 chr6 69461118 69461362 + 3 NA Intergenic L1M6|LINE|L1 335226 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 540-28 chr10 54076801 54077158 + 3 NA intron (NM_001354411, intron 18 of 34) intron (NM_001354411, intron 18 of 34) -409251 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 485-276 chr7 153508294 153508586 + 3 NA Intergenic Intergenic -96206 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 398-66 chr12 14475247 14475453 + 3 NA intron (NM_181352, intron 10 of 14) intron (NM_181352, intron 10 of 14) 90069 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 277-349 chr6 57143039 57143235 + 3 NA intron (NM_015555, intron 9 of 13) L1ME2|LINE|L1 29076 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 526-215 chr6 69529465 69529745 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 266861 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 688-28 chr11 107201062 107201421 + 3 NA Intergenic L1ME4a|LINE|L1 -182765 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 531-75 chr15 100424700 100424924 + 3 NA intron (NR_120374, intron 3 of 4) MSTA-int|LTR|ERVL-MaLR 51873 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 485-301 chr8 137885858 137886143 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 197545 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 468-33 chr10 66663920 66664086 + 3 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -262033 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 539-115 chr2 81798769 81799204 + 3 NA Intergenic L1M4c|LINE|L1 -332040 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 761-8 chr10 58254549 58254921 + 3 NA intron (NM_152230, intron 1 of 5) intron (NM_152230, intron 1 of 5) 13159 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 539-33 chr10 109400008 109400324 + 3 NA Intergenic Intergenic 523080 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 548-12 chr1 181162878 181163156 + 3 NA Intergenic Intergenic -11467 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 525-3 chr1 55759652 55759960 + 3 NA Intergenic L1M4a1|LINE|L1 185157 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 191-71 chr16 78369323 78369403 + 3 NA intron (NM_001291997, intron 4 of 7) L1M7|LINE|L1 269709 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 434-208 chr4 63579040 63579272 + 3 NA Intergenic MER52-int|LTR|ERV1 830294 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 610-24 chr10 108833829 108834117 + 3 NA Intergenic L1MB8|LINE|L1 -764680 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 986-11 chr11 54979652 54980168 + 3 NA Intergenic ALR/Alpha|Satellite|centr 273078 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 294-129 chr14 86276749 86276903 + 3 NA Intergenic L1M8|LINE|L1 342148 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 771-51 chr21 9246741 9247086 + 3 NA Intergenic Intergenic -117152 NR_038328 100132288 Hs.487562 NM_174948 ENSG00000188681 TEKT4P2 MAFIPL|TEKT4P tektin 4 pseudogene 2 pseudo 526-57 chr12 20034903 20035191 + 3 NA intron (NR_040098, intron 2 of 2) L3|LINE|CR1 20362 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 511-91 chr17 47758948 47759209 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger 25842 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 388-142 chr19 6189773 6190067 + 3 NA intron (NM_030924, intron 13 of 14) AluSc|SINE|Alu 54253 NM_001289178 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 449-90 chr16 8349489 8349661 + 3 NA Intergenic Intergenic 240263 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 427-216 chr5 137534932 137535114 + 3 NA Intergenic L2a|LINE|L2 -35697 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 562-115 chr2 142792324 142792636 + 3 NA Intergenic L1PREC2|LINE|L1 -85184 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 1383-7 chr7 62752226 62752814 + 3 NA Intergenic ALR/Alpha|Satellite|centr 551536 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 339-422 chr4 113163792 113163987 + 3 NA intron (NM_001354241, intron 2 of 45) L1MB8|LINE|L1 11607 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 507-135 chr2 123706924 123707278 + 3 NA Intergenic L1MB4|LINE|L1 318073 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 719-8 chr1 217786562 217787050 + 3 NA intron (NM_138796, intron 8 of 10) (TTC)n|Simple_repeat|Simple_repeat -1686 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 797-19 chr18 6514307 6514736 + 3 NA intron (NR_120518, intron 2 of 5) L1MB2|LINE|L1 3105 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 693-101 chr8 65801721 65802059 + 3 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) -12833 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 662-52 chr2 186558285 186558692 + 3 NA Intergenic Intergenic -31568 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 255-252 chr3 26470882 26470975 + 3 NA Intergenic Intergenic -151878 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 400-166 chr2 65808420 65808634 + 3 NA Intergenic Intergenic -375928 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 374-113 chr15 64900685 64900928 + 3 NA Intergenic L1ME3G|LINE|L1 -11096 NM_182703 348094 Hs.207157 NM_182703 ENSG00000166839 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 470-156 chr20 39634429 39634796 + 3 NA Intergenic Intergenic -369849 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 489-11 chr1 118723317 118723585 + 3 NA Intergenic L1MB1|LINE|L1 264892 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 561-142 chr4 36775548 36775918 + 3 NA Intergenic Intergenic -133833 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 353-530 chr8 88640533 88640722 + 3 NA Intergenic Intergenic -313144 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 377-176 chr18 76083764 76084068 + 3 NA Intergenic Intergenic -39082 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 350-480 chr7 54516550 54516722 + 3 NA Intergenic L1M4|LINE|L1 -25689 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 271-357 chr5 117849187 117849311 + 3 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 118888 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 413-131 chr2 21700180 21700407 + 3 NA intron (NR_038837, intron 2 of 2) (TA)n|Simple_repeat|Simple_repeat 10359 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 364-363 chr5 122233435 122233589 + 3 NA Intergenic Intergenic 73336 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 596-10 chr1 193876786 193877139 + 3 NA Intergenic L1PA5|LINE|L1 572217 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 500-22 chr10 8748572 8748786 + 3 NA Intergenic Intergenic -149310 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 274-395 chr8 117469247 117469462 + 3 NA Intergenic Intergenic -51359 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 531-255 chr8 136895711 136895926 + 3 NA intron (NR_147196, intron 4 of 5) MER20B|DNA|hAT-Charlie 365020 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 717-12 chr10 39385889 39386337 + 3 NA Intergenic ALR/Alpha|Satellite|centr 689517 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 384-291 chr5 45002766 45002963 + 3 NA Intergenic Intergenic 193917 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 473-185 chr3 188342879 188343067 + 3 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 117568 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 797-24 chr2 20150645 20151003 + 3 NA Intergenic Intergenic 74306 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 204-178 chr21 29669715 29669796 + 3 NA intron (NM_000830, intron 4 of 16) MIRb|SINE|MIR 73715 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 378-76 chr11 31632083 31632233 + 3 NA intron (NM_001288725, intron 6 of 10) intron (NM_001288725, intron 6 of 10) 122391 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 620-140 chr8 57334188 57334485 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -9451 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 479-181 chr5 9734085 9734322 + 3 NA intron (NR_027112, intron 5 of 12) MLT1A0|LTR|ERVL-MaLR -103852 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 430-153 chr2 133646749 133647050 + 3 NA Intergenic L1MB1|LINE|L1 -78436 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 681-32 chr18 71966762 71967101 + 3 NA Intergenic Intergenic -184705 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 1094-6 chr18 13964817 13965295 + 3 NA Intergenic L1MA9|LINE|L1 -49349 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 364-324 chr5 2411739 2411917 + 3 NA Intergenic Intergenic -99627 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 580-207 chrX 45235795 45236036 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR -35039 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 592-57 chr15 69741525 69741802 + 3 NA Intergenic Intergenic -93571 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 662-25 chr14 70226906 70227352 + 3 NA intron (NR_135825, intron 2 of 3) L1PA16|LINE|L1 20672 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 304-146 chr14 63187546 63187795 + 3 NA Intergenic L1MC4|LINE|L1 -16773 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 380-311 chr5 104997226 104997453 + 3 NA Intergenic Intergenic -102135 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 636-22 chr11 61043227 61043673 + 3 NA Intergenic L1ME2|LINE|L1 -50513 NM_001346456 921 Hs.58685 NM_014207 ENSG00000110448 CD5 LEU1|T1 CD5 molecule protein-coding 456-55 chr12 20667263 20667494 + 3 NA intron (NM_000921, intron 15 of 15) L1MA4A|LINE|L1 -27977 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 602-61 chr2 98953327 98953722 + 3 NA Intergenic L1M4|LINE|L1 -17299 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 1439-4 chr22 49991478 49992397 + 3 NA 3' UTR (NM_001371417, exon 15 of 15) 3' UTR (NM_001371417, exon 15 of 15) 20828 NM_001371416 473-246 chr6 141697790 141697999 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 390905 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 548 chr1 42117008 42117311 + 3 NA Intergenic L2-1_AMi|LINE|L2 -36251 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 677-69 chr6 18782571 18782893 + 3 NA Intergenic Intergenic 210948 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 280-7 chr1 69077145 69077374 + 3 NA intron (NR_146608, intron 1 of 4) LTR49-int|LTR|ERV1 21361 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 732-91 chr8 48719647 48720066 + 3 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 15412 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 464-199 chr5 37766119 37766311 + 3 NA Intergenic MER57B1|LTR|ERV1 68607 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 382-393 chr7 127016521 127016679 + 3 NA intron (NM_001371085, intron 3 of 10) MamRTE1|LINE|RTE-BovB 41584 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 367-440 chr8 26921591 26921719 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -54377 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 351-366 chr5 5970269 5970518 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 366899 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 900-13 chr17 77653104 77653560 + 3 NA Intergenic Intergenic 75227 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 450-41 chr10 121601165 121601419 + 3 NA Intergenic Intergenic -2834 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 923-14 chr2 136366321 136366715 + 3 NA Intergenic L1MEd|LINE|L1 -248363 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 360-377 chr5 125729132 125729288 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR 235949 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 533-164 chr4 119015812 119016098 + 3 NA intron (NM_001128934, intron 1 of 4) intron (NM_001128934, intron 1 of 4) -119829 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 430-204 chr3 181399621 181399795 + 3 NA intron (NR_075091, intron 3 of 7) MIR|SINE|MIR 42778 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 584-97 chr3 30785054 30785407 + 3 NA intron (NM_207359, intron 13 of 14) L2a|LINE|L2 109431 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 496-150 chr2 172850884 172851078 + 3 NA intron (NM_001100397, intron 1 of 27) L1PREC2|LINE|L1 -9057 NM_001282900 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 483-131 chr2 183011494 183011665 + 3 NA intron (NM_013436, intron 2 of 30) L1MB7|LINE|L1 26878 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 784-64 chr8 129434148 129434525 + 3 NA intron (NR_130920, intron 1 of 3) L1M1|LINE|L1 49806 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 520-235 chr5 62759428 62759663 + 3 NA Intergenic MER1B|DNA|hAT-Charlie 180726 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 296-179 chr16 76989092 76989247 + 3 NA Intergenic L1M5|LINE|L1 120233 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 525-205 chr5 121148799 121149134 + 3 NA Intergenic L1PB4|LINE|L1 -173584 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 702-98 chr8 62458337 62458745 + 3 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 209687 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 341-525 chr8 86152497 86152643 + 3 NA intron (NM_152565, intron 7 of 7) intron (NM_152565, intron 7 of 7) 53660 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 977-16 chr8 59223025 59223421 + 3 NA Intergenic Intergenic 104013 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 519-186 chr5 158610700 158611008 + 3 NA Intergenic Intergenic -201081 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 596-24 chr10 47093387 47093589 + 3 NA Intergenic AluJr|SINE|Alu 181766 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 391-366 chr8 127028534 127028711 + 3 NA Intergenic Intergenic 15468 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 924-25 chr2 78272640 78273085 + 3 NA intron (NR_110288, intron 1 of 3) L1MA9|LINE|L1 17869 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 631-79 chr21 18610991 18611336 + 3 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 75001 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 391-25 chr1 198914786 198915068 + 3 NA intron (NR_040073, intron 1 of 2) intron (NR_040073, intron 1 of 2) 22502 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 341-401 chr4 136620047 136620221 + 3 NA Intergenic Intergenic -573622 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 482-102 chr17 83141601 83141859 + 3 NA Intergenic L1MA7|LINE|L1 60584 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 385-266 chr4 55286722 55286925 + 3 NA Intergenic Intergenic -59419 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 416-172 chr2 84827972 84828143 + 3 NA intron (NM_001080824, intron 4 of 5) intron (NM_001080824, intron 4 of 5) 53027 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 475-112 chr18 6695226 6695537 + 3 NA Intergenic L1MC5|LINE|L1 -34335 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 514-86 chr14 62172319 62172537 + 3 NA Intergenic Intergenic -32455 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 707-68 chr3 96504672 96505187 + 3 NA Intergenic Intergenic 144965 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 523-185 chr3 118719381 118719629 + 3 NA intron (NR_135547, intron 1 of 3) L1MD1|LINE|L1 77737 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 338-463 chr6 19101097 19101293 + 3 NA intron (NR_110860, intron 6 of 10) intron (NR_110860, intron 6 of 10) 79285 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 855-3 chr1 248113583 248114100 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -8295 NR_002141 388762 Hs.528509 NR_002141 OR2M1P JCG10|OR2M1|OST037 olfactory receptor family 2 subfamily M member 1 pseudogene pseudo 418-203 chr4 184136580 184136768 + 3 NA intron (NM_153343, intron 2 of 7) L1ME3Cz|LINE|L1 81199 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 512-211 chr5 27904099 27904335 + 3 NA Intergenic L1ME3A|LINE|L1 383448 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 847-44 chr6 141550562 141551019 + 3 NA Intergenic L1MB7|LINE|L1 538009 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 486-5 chr1 74660332 74660528 + 3 NA intron (NM_001002912, intron 1 of 14) intron (NM_001002912, intron 1 of 14) 13362 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 885-20 chr5 106544767 106545103 + 3 NA Intergenic L1M3a|LINE|L1 466079 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 484-170 chr3 46515013 46515221 + 3 NA TTS (NM_024512) TTS (NM_024512) 17141 NM_031440 83597 Hs.196584 NM_031440 ENSG00000163825 RTP3 LTM1|TMEM7|Z3CXXC3 receptor transporter protein 3 protein-coding 660-60 chr21 42608686 42609073 + 3 NA intron (NR_131192, intron 1 of 1) MER4B|LTR|ERV1 6216 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 452-82 chr14 78432483 78432674 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 28859 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 818-32 chr21 30370371 30370856 + 3 NA TTS (NM_181621) TTS (NM_181621) 1658 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 863-37 chr5 133376402 133376765 + 3 NA intron (NM_015082, intron 4 of 15) L1M4b|LINE|L1 51123 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 383-420 chrX 63477768 63478005 + 3 NA intron (NR_152612, intron 1 of 2) L1P4|LINE|L1 83209 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 235-175 chr2 82444948 82445090 + 3 NA Intergenic Intergenic -411784 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 389-217 chr22 27000462 27000626 + 3 NA Intergenic Intergenic 59974 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 575-5 chr1 67673806 67674120 + 3 NA Intergenic Intergenic -11238 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 1062-12 chr21 30331749 30332396 + 3 NA Intergenic Intergenic 5622 NM_001077711 643812 Hs.580881 NM_001077711 ENSG00000206107 KRTAP27-1 - keratin associated protein 27-1 protein-coding 568-67 chr16 3223157 3223450 + 3 NA 3' UTR (NM_001145446, exon 5 of 5) 3' UTR (NM_001145446, exon 5 of 5) 7741 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 426-141 chr2 121858089 121858320 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 102553 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 619-128 chr8 82996051 82996371 + 3 NA Intergenic Intergenic 84107 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 493-2 chr1 24452203 24452522 + 3 NA intron (NR_136506, intron 6 of 10) MIR|SINE|MIR 36337 NM_001322857 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 471-35 chr10 82172730 82172972 + 3 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 60069 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 696-78 chr4 32291705 32292131 + 3 NA Intergenic Intergenic -59120 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 245-198 chr2 107518990 107519157 + 3 NA Intergenic L1ME1|LINE|L1 -10346 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 487-270 chr7 46501844 46502109 + 3 NA Intergenic Intergenic 195146 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 280-111 chr13 62356450 62356595 + 3 NA Intergenic L1MEc|LINE|L1 32865 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 590-73 chr2 3978669 3978999 + 3 NA Intergenic Intergenic 4673 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 485-116 chr19 34757769 34758058 + 3 NA TTS (NM_001007248) TTS (NM_001007248) 15302 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 449-7 chr1 88068545 88068762 + 3 NA Intergenic L1MD2|LINE|L1 -615491 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 217-260 chr4 64010607 64010750 + 3 NA Intergenic Intergenic 398772 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 541-147 chr22 19316101 19316450 + 3 NA Intergenic LTR76|LTR|ERV1 -24556 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 991-24 chr8 81032285 81032723 + 3 NA intron (NM_018440, intron 2 of 8) L1MB8|LINE|L1 79564 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 541-136 chr20 7897104 7897428 + 3 NA intron (NM_017545, intron 4 of 7) HAL1|LINE|L1 43192 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 533-112 chr2 192777266 192777595 + 3 NA TTS (NR_002769) TTS (NR_002769) 27585 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 486-235 chr5 5813269 5813507 + 3 NA Intergenic Intergenic 390711 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 452-18 chr1 213343761 213343931 + 3 NA Intergenic L1M7|LINE|L1 292605 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 822-31 chr2 78817780 78818127 + 3 NA Intergenic Intergenic -207749 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 235-212 chr21 29879900 29880018 + 3 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 60037 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 341-446 chr5 126099242 126099393 + 3 NA Intergenic Intergenic -80260 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 408-121 chr15 86130415 86130640 + 3 NA intron (NM_152336, intron 1 of 24) MIR3|SINE|MIR -13810 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 424-148 chr2 198819538 198819789 + 3 NA Intergenic Intergenic -444566 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 351-176 chr17 69723826 69724027 + 3 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 129939 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 402-232 chr4 58835681 58835863 + 3 NA Intergenic Intergenic -148510 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 419-205 chr4 82534794 82535025 + 3 NA intron (NM_001353454, intron 1 of 7) intron (NM_001353454, intron 1 of 7) 27079 NM_001080506 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 876-9 chr12 2749998 2750694 + 3 NA intron (NR_146317, intron 3 of 3) L1P3|LINE|L1 -44624 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FKBP prolyl isomerase 4 protein-coding 359-444 chr7 25306751 25306964 + 3 NA Intergenic Intergenic -78371 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 605-110 chr7 38531945 38532180 + 3 NA intron (NM_001635, intron 2 of 20) intron (NM_001635, intron 2 of 20) 99311 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 296-275 chr21 18199466 18199680 + 3 NA intron (NM_001204178, intron 2 of 5) L1MC2|LINE|L1 -45260 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 921-23 chr7 64570884 64571271 + 3 NA Intergenic Intergenic -3618 NR_077227 100128885 Hs.586332 NR_077227 LOC100128885 - uncharacterized LOC100128885 ncRNA 181-154 chr8 34550706 34550784 + 3 NA Intergenic L1MB1|LINE|L1 -233176 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 227-362 chr8 26252680 26252798 + 3 NA Intergenic AluJb|SINE|Alu -38769 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 363-113 chr12 129613148 129613281 + 3 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 290811 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 430-278 chr7 15076666 15076997 + 3 NA Intergenic Intergenic -101973 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 565-85 chr2 122118117 122118389 + 3 NA Intergenic L1MA4A|LINE|L1 362602 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 437-103 chr17 31089427 31089691 + 3 NA Intergenic HERV16-int|LTR|ERVL 4866 NR_039886 100616266 NR_039886 ENSG00000265444 MIR4733 - microRNA 4733 ncRNA 701-46 chr2 153839022 153839435 + 3 NA Intergenic L1MA9|LINE|L1 -32694 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 211-187 chr3 60733617 60733690 + 3 NA intron (NR_148921, intron 4 of 4) intron (NR_148921, intron 4 of 4) -115783 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 544-49 chr11 114920279 114920526 + 3 NA Intergenic Intergenic 241875 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 402-310 chr7 4503436 4503597 + 3 NA Intergenic L1MD2|LINE|L1 -178779 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 288-58 chr10 90172773 90172948 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -215487 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 1345-7 chr5 27106883 27107868 + 3 NA Intergenic Intergenic -68789 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 784-31 chr2 156135518 156135897 + 3 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 119224 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 562-46 chr12 46313814 46314082 + 3 NA Intergenic L1MB3|LINE|L1 -44905 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 1287-4 chr3 3944713 3945456 + 3 NA Intergenic L1MA1|LINE|L1 -144209 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 449-81 chr14 70135637 70135890 + 3 NA intron (NM_033262, intron 2 of 7) L1MA4|LINE|L1 -51345 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 719-73 chr7 11501726 11502124 + 3 NA intron (NM_015204, intron 6 of 26) L1PA14|LINE|L1 330273 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 587-151 chr7 40753400 40753675 + 3 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 226402 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 430-250 chr5 116331076 116331259 + 3 NA Intergenic Intergenic 43403 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 333-293 chr20 7423078 7423248 + 3 NA Intergenic L1MC5a|LINE|L1 51555 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 780-65 chr8 103271851 103272314 + 3 NA intron (NR_148215, intron 2 of 3) MSTA-int|LTR|ERVL-MaLR -26412 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 627-46 chr18 76095456 76095716 + 3 NA Intergenic L1PA17|LINE|L1 -27412 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 250-338 chr5 40327080 40327199 + 3 NA Intergenic MER57-int|LTR|ERV1 274848 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 553-15 chr10 23686360 23686614 + 3 NA Intergenic MER76|LTR|ERVL -8240 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 443-93 chr14 57794591 57794767 + 3 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 70320 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 594-35 chr12 30247166 30247533 + 3 NA Intergenic Intergenic 429895 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 572-58 chr15 24035507 24035762 + 3 NA intron (NR_126392, intron 4 of 5) PRIMA41-int|LTR|ERV1 60487 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 491-74 chr15 33786982 33787160 + 3 NA intron (NM_001243996, intron 66 of 102) intron (NM_001243996, intron 66 of 102) -181426 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 437-39 chr11 41828579 41828820 + 3 NA intron (NR_120584, intron 4 of 5) intron (NR_120584, intron 4 of 5) 114131 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 380-222 chr20 48532013 48532182 + 3 NA Intergenic AluJb|SINE|Alu 172186 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 545-108 chr2 42560889 42561172 + 3 NA intron (NM_001282755, intron 2 of 17) L2a|LINE|L2 -7015 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 618-12 chr10 41806152 41806486 + 3 NA Intergenic ALR/Alpha|Satellite|centr 561726 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 387-365 chr8 91512054 91512286 + 3 NA Intergenic Intergenic 262851 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 765-30 chr2 116543196 116543614 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 1199590 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 487-278 chr7 111016656 111016926 + 3 NA intron (NM_032549, intron 3 of 5) (TA)n|Simple_repeat|Simple_repeat -74215 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 522-64 chr12 52273188 52273368 + 3 NA Intergenic L1ME3D|LINE|L1 -1367 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 704-27 chr14 72109376 72109968 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 176145 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 251-150 chr19 52851335 52851456 + 3 NA intron (NM_001008801, intron 2 of 3) AluSc8|SINE|Alu 6224 NM_001008801 90333 Hs.467223 NM_199132 ENSG00000204604 ZNF468 - zinc finger protein 468 protein-coding 860-10 chr11 114190265 114190810 + 3 NA intron (NM_006006, intron 4 of 6) intron (NM_006006, intron 4 of 6) -105276 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 372-117 chr12 86449132 86449289 + 3 NA intron (NM_013244, intron 1 of 6) intron (NM_013244, intron 1 of 6) -191911 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 727-70 chr6 99637533 99637799 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 30892 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 428-277 chr7 86196113 86196256 + 3 NA Intergenic L1MEd|LINE|L1 -447725 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 531-74 chr15 92033361 92033645 + 3 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 179199 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 456-43 chr10 123909359 123909521 + 3 NA Intergenic Intergenic -17633 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 612-16 chr10 64881702 64881947 + 3 NA Intergenic Intergenic 42694 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 649-25 chr14 72757755 72758188 + 3 NA intron (NM_001280544, intron 2 of 9) L1MC5a|LINE|L1 134678 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 404-64 chr11 81746097 81746256 + 3 NA Intergenic L2c|LINE|L2 144660 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 604-47 chr14 70211403 70211699 + 3 NA intron (NR_135825, intron 2 of 3) AluJr|SINE|Alu -22481 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 713-13 chr10 85166934 85167314 + 3 NA Intergenic L1M5|LINE|L1 31781 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 291-349 chr5 53830618 53830731 + 3 NA Intergenic L1MC5|LINE|L1 -10992 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 232-414 chrX 95241220 95241395 + 3 NA Intergenic L1MA1|LINE|L1 -178081 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 441-167 chr3 141801445 141801679 + 3 NA intron (NM_139209, intron 2 of 3) L1MC5|LINE|L1 23361 NM_139209 131890 Hs.680654 NM_139209 ENSG00000114124 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 1034-3 chr1 190773330 190773724 + 3 NA intron (NR_033922, intron 2 of 4) intron (NR_033922, intron 2 of 4) 148637 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 574-82 chr2 124844284 124844559 + 3 NA intron (NM_130773, intron 19 of 23) L1PBa|LINE|L1 819134 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 366-288 chr3 153837540 153837708 + 3 NA Intergenic Intergenic -75098 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 506-248 chr6 28373137 28373491 + 3 NA Intergenic L1MDa|LINE|L1 9291 NR_160527 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 170-79 chr2 228652600 228652667 + 3 NA Intergenic Intergenic -41238 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 311-519 chr8 118160200 118160319 + 3 NA intron (NR_146234, intron 4 of 5) L1ME2|LINE|L1 -48440 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 879-12 chr17 71950037 71950424 + 3 NA Intergenic AluJo|SINE|Alu 75749 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 534-270 chr8 142064177 142064461 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -112020 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 1287-7 chr7 53215990 53216541 + 3 NA Intergenic Intergenic 180632 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 497-44 chr11 87046481 87046671 + 3 NA intron (NR_033149, intron 1 of 13) L2c|LINE|L2 8642 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 943-13 chr19 50063245 50063608 + 3 NA intron (NR_138096, intron 2 of 4) L1MB7|LINE|L1 12837 NR_027257 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 747-14 chr11 129166844 129167223 + 3 NA intron (NM_001142685, intron 1 of 21) L1ME3|LINE|L1 25165 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 304-481 chr7 12454199 12454364 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -42148 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 516-118 chr2 30667417 30667666 + 3 NA Intergenic Intergenic 139905 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 263-64 chr11 12297852 12298022 + 3 NA intron (NM_032867, intron 3 of 8) L1ME4b|LINE|L1 11037 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 563-200 chrX 82695170 82695506 + 3 NA Intergenic Intergenic -812952 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 533-126 chr22 27697778 27698057 + 3 NA Intergenic Intergenic 103839 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 639-14 chr10 76506510 76506861 + 3 NA intron (NM_001305581, intron 6 of 6) L1MA4|LINE|L1 -381359 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 592-130 chr4 111324158 111324410 + 3 NA Intergenic Intergenic -463637 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 422-165 chr20 8630850 8631045 + 3 NA intron (NM_182734, intron 4 of 32) intron (NM_182734, intron 4 of 32) -200238 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 470-106 chr18 78271203 78271437 + 3 NA Intergenic AluJo|SINE|Alu -277593 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 449-166 chr3 78477141 78477311 + 3 NA Intergenic LTR24C|LTR|ERV1 -428263 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 332-325 chr3 67717757 67717976 + 3 NA intron (NR_109992, intron 3 of 6) L1MD1|LINE|L1 63169 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 342-76 chr10 83616794 83617002 + 3 NA Intergenic MamRep605|LTR?|LTR? 60191 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 356-488 chr8 122219004 122219176 + 3 NA Intergenic Intergenic 349554 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 338-412 chr5 13351387 13351606 + 3 NA Intergenic Intergenic -318610 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 523-111 chr18 25618212 25618481 + 3 NA Intergenic MER113|DNA|hAT-Charlie -266180 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 286-395 chr6 106208801 106208898 + 3 NA intron (NR_104402, intron 4 of 5) L1MD2|LINE|L1 107417 NR_104402 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 608-143 chr7 33447408 33447676 + 3 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 317978 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 613-64 chr2 137374794 137375061 + 3 NA intron (NM_001316349, intron 12 of 27) MIR3|SINE|MIR 553005 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 353-202 chr18 2090637 2090874 + 3 NA Intergenic Intergenic 480750 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 364-405 chr7 12082693 12082924 + 3 NA Intergenic Intergenic -128486 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 347-356 chr4 113817848 113818076 + 3 NA Intergenic L1MA6|LINE|L1 -56035 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 590-137 chr5 114412530 114412730 + 3 NA intron (NM_021614, intron 3 of 7) intron (NM_021614, intron 3 of 7) -20881 NR_103458 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 570-127 chr21 19722787 19723108 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 176808 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 749-43 chr18 34257668 34258080 + 3 NA Intergenic L1MCa|LINE|L1 -34323 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 518-303 chr8 132502651 132502985 + 3 NA Intergenic Intergenic -21723 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 458-225 chr6 73899808 73900053 + 3 NA Intergenic Intergenic -169521 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 530-79 chr14 82612054 82612371 + 3 NA Intergenic Intergenic -30420 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 515-205 chr5 59730580 59730901 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -27037 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 484-268 chr8 113962511 113962853 + 3 NA Intergenic Intergenic -525743 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 617-89 chr3 94806577 94806873 + 3 NA Intergenic Intergenic -131538 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 285-203 chr2 83866352 83866506 + 3 NA Intergenic Intergenic 343615 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 1087-7 chr2 116075704 116076198 + 3 NA Intergenic Helitron2Na_Mam|RC?|Helitron? 732136 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 263-148 chr16 85455450 85455556 + 3 NA Intergenic Intergenic -149178 NR_049816 100847022 NR_049816 ENSG00000266307 MIR5093 - microRNA 5093 ncRNA 1057-13 chr3 88882549 88883006 + 3 NA Intergenic L1MA2|LINE|L1 -224844 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 475-136 chr2 99107232 99107442 + 3 NA intron (NR_146001, intron 6 of 18) intron (NR_146001, intron 6 of 18) 33843 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 350-373 chr4 178026111 178026359 + 3 NA Intergenic L1ME2|LINE|L1 -118299 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 644-81 chr6 17341409 17341740 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -51931 NM_001363533 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 550-200 chr6 65268442 65268802 + 3 NA intron (NM_001292009, intron 12 of 43) L4_C_Mam|LINE|RTE-X -32796 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 366-86 chr11 100301547 100301710 + 3 NA intron (NM_001243270, intron 19 of 23) intron (NM_001243270, intron 19 of 23) -385660 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 621-60 chr2 163354886 163355269 + 3 NA Intergenic Intergenic 380931 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 551-10 chr1 175768046 175768344 + 3 NA Intergenic Intergenic -24600 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 461-36 chr10 80300274 80300449 + 3 NA Intergenic Intergenic -10703 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 758-13 chr10 127287644 127288010 + 3 NA intron (NM_001290223, intron 29 of 51) L1MC5a|LINE|L1 -91236 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 173-41 chr15 60147907 60147980 + 3 NA Intergenic L2c|LINE|L2 143632 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 586-93 chr21 30836214 30836485 + 3 NA Intergenic Intergenic -6590 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 220-138 chr18 1688233 1688344 + 3 NA Intergenic MER57-int|LTR|ERV1 -328659 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 339-182 chr15 91290360 91290578 + 3 NA intron (NM_001323036, intron 11 of 11) L1M4|LINE|L1 -172870 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 482-57 chr12 1905588 1905803 + 3 NA intron (NM_172364, intron 6 of 37).2 L1M4c|LINE|L1 12957 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 685-13 chr11 27816591 27816986 + 3 NA Intergenic MIR|SINE|MIR -94758 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 272-19 chr1 170881247 170881470 + 3 NA Intergenic MIR|SINE|MIR -54113 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 492-75 chr13 56732074 56732345 + 3 NA Intergenic Intergenic -408709 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 743-11 chr10 47180276 47180770 + 3 NA Intergenic Intergenic -119674 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 702-110 chrX 63664085 63664588 + 3 NA intron (NM_001353922, intron 6 of 8) intron (NM_001353922, intron 6 of 8) 7166 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 403-130 chr17 49593416 49593581 + 3 NA Intergenic Intergenic 17627 NM_007225 11248 Hs.55069 NM_007225 ENSG00000182575 NXPH3 NPH3 neurexophilin 3 protein-coding 356-87 chr11 86724464 86724653 + 3 NA Intergenic Tigger7|DNA|TcMar-Tigger -51922 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 344-413 chr6 35398688 35398812 + 3 NA intron (NM_001171818, intron 3 of 8) L2a|LINE|L2 -53611 NM_021922 2178 Hs.302003 NM_021922 ENSG00000112039 FANCE FACE|FAE FA complementation group E protein-coding 476-199 chr4 88432442 88432821 + 3 NA intron (NM_001165136, intron 16 of 21) AluSz|SINE|Alu -24488 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 695-86 chr5 159904083 159904352 + 3 NA Intergenic MIR3|SINE|MIR -12265 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 572-142 chr5 85329522 85329907 + 3 NA Intergenic Intergenic -944834 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 468-295 chr7 46497128 46497369 + 3 NA Intergenic L1MB7|LINE|L1 199874 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 695-77 chr5 16083224 16083729 + 3 NA intron (NM_001102562, intron 3 of 3) intron (NM_001102562, intron 3 of 3) 96315 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 343-207 chr18 75662439 75662646 + 3 NA Intergenic L1M4a1|LINE|L1 49861 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 404-107 chr14 86424458 86424619 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -481240 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 373-179 chr19 56587973 56588112 + 3 NA Intergenic Intergenic -7254 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 711-55 chr5 16320864 16321309 + 3 NA Intergenic Intergenic 120016 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 394-305 chr7 46390899 46391086 + 3 NA Intergenic Intergenic 306130 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 329-170 chr14 85434740 85434899 + 3 NA Intergenic Intergenic 40904 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 601-125 chr5 122256832 122257179 + 3 NA Intergenic L1PB3|LINE|L1 -54686 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 746-74 chr7 81075364 81075753 + 3 NA Intergenic Intergenic -153169 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 491-28 chr11 3362653 3362938 + 3 NA intron (NR_046381, intron 4 of 6) L1M4|LINE|L1 16351 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 662-108 chrX 57434415 57434716 + 3 NA intron (NR_148564, intron 8 of 11) L1M2|LINE|L1 147711 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 362-241 chr2 209380871 209381019 + 3 NA Intergenic Intergenic -43102 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 213-217 chr4 113422378 113422454 + 3 NA Intergenic L1M8|LINE|L1 129577 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 407-324 chr8 88210812 88211039 + 3 NA intron (NM_005941, intron 1 of 9) MIRb|SINE|MIR 116558 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 598-100 chr4 179503680 179504061 + 3 NA Intergenic L1MC2|LINE|L1 -1595934 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 380-425 chrX 25072781 25073037 + 3 NA Intergenic Intergenic -56944 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 386-133 chr17 77785820 77786012 + 3 NA Intergenic Intergenic -57357 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 320-512 chr7 43561214 43561411 + 3 NA intron (NM_001287059, intron 27 of 27) intron (NM_001287059, intron 27 of 27) -21796 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 759-22 chr14 55822255 55822731 + 3 NA Intergenic LTR8|LTR|ERV1 -25819 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 463-29 chr1 214872525 214872817 + 3 NA Intergenic Intergenic -132871 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 611-24 chr11 59326383 59326755 + 3 NA Intergenic LTR16E2|LTR|ERVL -37890 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 510-192 chr3 170779120 170779329 + 3 NA Intergenic MIRb|SINE|MIR 90971 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 476-165 chr21 17405878 17406075 + 3 NA Intergenic Intergenic -32914 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 592-93 chr2 171653882 171654202 + 3 NA Intergenic Intergenic -33427 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 454-168 chr2 123044682 123044906 + 3 NA Intergenic Intergenic 28687 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 1232-8 chr8 84319955 84320798 + 3 NA intron (NM_001354320, intron 2 of 9) (AT)n|Simple_repeat|Simple_repeat -95108 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 435-39 chr10 82831020 82831204 + 3 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -598192 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 272-227 chr2 195621417 195621587 + 3 NA Intergenic Intergenic -35456 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 891-6 chr12 40086299 40086774 + 3 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 19545 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 291-271 chr22 31517550 31517653 + 3 NA intron (NM_001258326, intron 2 of 30) L1M5|LINE|L1 21065 NM_001007467 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 579-97 chr22 47430168 47430413 + 3 NA Intergenic L2a|LINE|L2 56821 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 1278-3 chr18 3389106 3389809 + 3 NA Intergenic Intergenic -22470 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 397-149 chr2 34635040 34635245 + 3 NA Intergenic Intergenic -42415 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 357-158 chr17 71141723 71141987 + 3 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 60324 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 573-77 chr18 9244146 9244414 + 3 NA intron (NM_001204056, intron 7 of 11) intron (NM_001204056, intron 7 of 11) -90493 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 653-131 chr9 119692478 119692872 + 3 NA Intergenic Intergenic -242385 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 894-52 chr8 139760704 139761345 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -57901 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 367-246 chr20 11724894 11725182 + 3 NA Intergenic (CT)n|Simple_repeat|Simple_repeat 145677 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 477-122 chr18 3405184 3405465 + 3 NA Intergenic MER34|LTR|ERV1 -6603 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 329-135 chr12 119065923 119066056 + 3 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 84448 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 501-94 chr19 31085289 31085535 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -82098 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 469-123 chr2 14145065 14145328 + 3 NA Intergenic Intergenic 255762 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 610-77 chr19 37486164 37486464 + 3 NA 3' UTR (NM_001321992, exon 4 of 4) 3' UTR (NM_001321992, exon 4 of 4) 16743 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 384-83 chr12 67814973 67815128 + 3 NA Intergenic L1MEf|LINE|L1 -85575 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 490-297 chr8 112805091 112805299 + 3 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 161702 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 336-42 chr1 194748809 194748996 + 3 NA Intergenic Intergenic 1339813 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 452-196 chr4 120439102 120439302 + 3 NA Intergenic Intergenic -372354 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 348-455 chr6 81318755 81318905 + 3 NA Intergenic L1PA16|LINE|L1 433851 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 464-242 chr7 46260849 46261050 + 3 NA Intergenic Intergenic -339677 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 258-252 chr3 36106305 36106489 + 3 NA Intergenic L1ME1|LINE|L1 -274090 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 403-289 chr7 91646235 91646422 + 3 NA Intergenic L2c|LINE|L2 234374 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 529-245 chrX 99557032 99557319 + 3 NA Intergenic L1M1|LINE|L1 853098 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 512-100 chr17 53422696 53422956 + 3 NA Intergenic Intergenic -400101 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 301-465 chr8 130658088 130658287 + 3 NA Intergenic MER11A|LTR|ERVK -214513 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 368-174 chr16 35523183 35523338 + 3 NA Intergenic HERVK3-int|LTR|ERVK -16090 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 514-66 chr12 84121534 84121874 + 3 NA Intergenic Intergenic 791095 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 304-352 chr3 118033294 118033417 + 3 NA Intergenic L1MC4|LINE|L1 -342430 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 830-9 chr11 58048026 58048483 + 3 NA intron (NM_001005212, intron 1 of 2) intron (NM_001005212, intron 1 of 2) 17301 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 316-536 chr8 30740839 30741018 + 3 NA Intergenic Intergenic -3236 NM_005671 7993 Hs.153678 NM_005671 ENSG00000104691 UBXN8 D8S2298E|REP8|UBXD6 UBX domain protein 8 protein-coding 915-16 chr3 60275268 60275697 + 3 NA intron (NM_001320900, intron 6 of 9) MER110|LTR|ERV1 -194573 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 390-189 chr2 79536351 79536538 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 13261 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 502-129 chr2 15088106 15088400 + 3 NA Intergenic Intergenic 455536 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 797-8 chr10 112026817 112027426 + 3 NA Intergenic Intergenic 156644 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 580-100 chr20 52254617 52254826 + 3 NA Intergenic L2a|LINE|L2 -62736 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 707-33 chr15 69705534 69705977 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 113555 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 649-110 chr8 91685486 91685886 + 3 NA Intergenic L1MA9|LINE|L1 331994 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 445-165 chr22 22003645 22003870 + 3 NA intron (NR_135291, intron 4 of 6) LTR37A|LTR|ERV1 -20970 NM_001349850 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 454-243 chr4 127117751 127118019 + 3 NA Intergenic Intergenic -515072 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 706-4 chr1 247978504 247978853 + 3 NA intron (NM_001304535, intron 1 of 1) intron (NM_001304535, intron 1 of 1) -11589 NR_002145 26247 Hs.684887 NR_002145 ENSG00000224227 OR2L1P HSHTPCRX02|HTPCRX02|OR2L1|OR2L7P olfactory receptor family 2 subfamily L member 1 pseudogene pseudo 635-103 chr7 88521692 88522106 + 3 NA Intergenic Intergenic -215005 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 1050-10 chr4 37208959 37209574 + 3 NA Intergenic Intergenic 32725 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 488-4 chr1 38659365 38659552 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR 184262 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 508-84 chr18 10999574 10999759 + 3 NA intron (NM_022068, intron 2 of 51) MER2|DNA|TcMar-Tigger 149096 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 486-142 chr2 83622441 83622710 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 99761 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 237-75 chr12 44805766 44805862 + 3 NA intron (NM_006159, intron 4 of 20) intron (NM_006159, intron 4 of 20) 69847 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 329-297 chr2 171138526 171138729 + 3 NA intron (NM_001136554, intron 1 of 20) intron (NM_001136554, intron 1 of 20) 22266 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 787-5 chr11 114532422 114532853 + 3 NA intron (NM_152315, intron 2 of 5) L1M5|LINE|L1 27244 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 1025-2 chr1 179715886 179716393 + 3 NA Intergenic L1M3|LINE|L1 -11637 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 453-53 chr12 37880207 37880515 + 3 NA Intergenic ALR/Alpha|Satellite|centr -436413 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 988-39 chr8 89135357 89135875 + 3 NA Intergenic Intergenic 622095 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 344-334 chr3 147528043 147528220 + 3 NA Intergenic L1PA13|LINE|L1 106804 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 323-597 chrX 75980866 75981028 + 3 NA Intergenic L1MA4|LINE|L1 -191982 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 292-136 chr14 48310065 48310223 + 3 NA Intergenic Intergenic -515130 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 579-176 chr8 131678622 131678875 + 3 NA Intergenic Intergenic -225345 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 452-107 chr17 66875983 66876168 + 3 NA intron (NM_145811, intron 1 of 5) MER5A1|DNA|hAT-Charlie 40958 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 329-365 chr3 78262407 78262607 + 3 NA Intergenic L1MA4A|LINE|L1 -213544 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 378-8 chr1 57491001 57491207 + 3 NA intron (NM_001353980, intron 4 of 5) MIRb|SINE|MIR -66183 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 298-354 chr5 23030867 23031037 + 3 NA Intergenic L2|LINE|L2 -177608 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 345-273 chr2 107049176 107049325 + 3 NA Intergenic L1MA2|LINE|L1 -162141 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 474-232 chr5 64284528 64284709 + 3 NA intron (NM_001113561, intron 5 of 7) L1PA13|LINE|L1 118775 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 512-279 chr8 126640413 126640695 + 3 NA Intergenic Intergenic -82076 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 361-168 chr17 44673505 44673650 + 3 NA intron (NM_001145080, intron 7 of 7) intron (NM_001145080, intron 7 of 7) 16199 NM_144609 124808 Hs.579115 NM_144609 ENSG00000180329 CCDC43 - coiled-coil domain containing 43 protein-coding 608-42 chr14 78226859 78227216 + 3 NA intron (NR_073547, intron 1 of 20) MER117|DNA|hAT-Charlie 56664 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 602-118 chr6 88529006 88529405 + 3 NA non-coding (NR_110867, exon 3 of 3) non-coding (NR_110867, exon 3 of 3) 10164 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 468-89 chr15 47004528 47004796 + 3 NA Intergenic L1M1|LINE|L1 -179427 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 414-173 chr2 189935760 189936073 + 3 NA Intergenic Intergenic 126813 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 425-281 chr7 40138244 40138472 + 3 NA intron (NM_024728, intron 1 of 14) L1PB4|LINE|L1 3382 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 380-32 chr10 4732308 4732527 + 3 NA Intergenic Intergenic -54347 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 378-254 chr20 11689376 11689566 + 3 NA Intergenic L2|LINE|L2 181244 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 510-74 chr14 55901037 55901341 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -104515 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 579-117 chr4 75760246 75760510 + 3 NA intron (NM_003715, intron 4 of 23) intron (NM_003715, intron 4 of 23) 35856 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 601-88 chr22 37357107 37357533 + 3 NA intron (NR_110512, intron 1 of 2) MLT1J|LTR|ERVL-MaLR -2481 NR_110515 100506271 Hs.220558 NR_110515 ENSG00000237862 LOC100506271 - uncharacterized LOC100506271 ncRNA 681-40 chr2 132460182 132460448 + 3 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 26604 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 440-161 chr3 54829298 54829535 + 3 NA intron (NM_018398, intron 14 of 37) intron (NM_018398, intron 14 of 37) 71839 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 318-248 chr2 21165588 21165724 + 3 NA Intergenic Intergenic 41670 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 576-54 chr14 95819190 95819552 + 3 NA Intergenic MamRep4096|DNA|hAT? -57021 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 360-91 chr12 59127623 59127855 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -207201 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 800-11 chr10 73318316 73318775 + 3 NA intron (NM_001367801, intron 10 of 27) MIRb|SINE|MIR 40209 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 369-78 chr12 23522958 23523145 + 3 NA Intergenic L1MEg|LINE|L1 61535 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 208-20 chr10 44730839 44730932 + 3 NA Intergenic L1MB8|LINE|L1 -180431 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 362-70 chr10 76282111 76282352 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 499470 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 698-15 chr11 29613770 29614223 + 3 NA intron (NR_149107, intron 3 of 3) intron (NR_149107, intron 3 of 3) -4806 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 492-153 chr20 40341675 40342010 + 3 NA Intergenic L1MA9|LINE|L1 337381 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 463-299 chr8 140053117 140053345 + 3 NA intron (NM_001160372, intron 17 of 22) L1MC4|LINE|L1 47304 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 431-192 chr4 279968 280218 + 3 NA intron (NM_001137608, intron 3 of 3) intron (NM_001137608, intron 3 of 3) 25381 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 482-74 chr13 112527003 112527214 + 3 NA intron (NM_006322, intron 12 of 21) intron (NM_006322, intron 12 of 21) 61045 NM_001286278 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 372-223 chr2 48400285 48400484 + 3 NA Intergenic Intergenic -40382 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 464-181 chr4 63459577 63459823 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 949750 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 460-58 chr12 11422662 11422857 + 3 NA Intergenic L2a|LINE|L2 -27192 NM_006248 653247 Hs.654486 NM_006248 ENSG00000121335 PRB2 IB-9|PRPPRB1|Ps|cP7 proline rich protein BstNI subfamily 2 protein-coding 832-42 chr7 104604992 104605542 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 198825 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 400-35 chr10 53229004 53229203 + 3 NA Intergenic L1MA4|LINE|L1 -457403 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 529-189 chr5 153429578 153429815 + 3 NA Intergenic Intergenic -60828 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 526-16 chr10 21180606 21180847 + 3 NA Intergenic Intergenic 6424 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 918-24 chr6 169436500 169437171 + 3 NA Intergenic MER65-int|LTR|ERV1 -182721 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 521-105 chr18 21300869 21301098 + 3 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 58741 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 502-157 chr20 52558079 52558304 + 3 NA Intergenic L1MA5A|LINE|L1 -62647 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 651-41 chr14 86094862 86095260 + 3 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 160383 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 1138-10 chr2 79181092 79181759 + 3 NA Intergenic Intergenic -21672 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 426-195 chr4 27340396 27340697 + 3 NA Intergenic Intergenic 123067 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 339-594 chr8 131086660 131086823 + 3 NA Intergenic L1MEd|LINE|L1 -45832 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 527-195 chr4 102002680 102002867 + 3 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 188931 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 233-350 chr7 17939294 17939433 + 3 NA intron (NM_001350862, intron 1 of 25) intron (NM_001350862, intron 1 of 25) 1131 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 671-102 chr8 116901387 116901797 + 3 NA Intergenic (AAGA)n|Simple_repeat|Simple_repeat -26726 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 619-12 chr1 198944384 198944627 + 3 NA Intergenic Intergenic -7076 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 280-234 chr20 52395434 52395580 + 3 NA Intergenic Intergenic -203522 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 580-57 chr15 80340088 80340415 + 3 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 1554 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 532-291 chrX 75039718 75040059 + 3 NA Intergenic L1M1|LINE|L1 -114436 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 506-127 chr2 33732354 33732605 + 3 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -4262 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 907-28 chr8 126638040 126638666 + 3 NA Intergenic Intergenic -79875 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 679-11 chr1 241005953 241006437 + 3 NA intron (NM_001350116, intron 3 of 16) intron (NM_001350116, intron 3 of 16) -126077 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 628-83 chr20 52663877 52664350 + 3 NA Intergenic Intergenic 43275 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 821-9 chr10 93136454 93136886 + 3 NA Intergenic Intergenic 62777 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 465-118 chr19 30586351 30586577 + 3 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 214080 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 415-280 chr8 77743643 77743812 + 3 NA Intergenic L1MB8|LINE|L1 293030 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 754-70 chr6 12827812 12828301 + 3 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) 109357 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 401-246 chr4 184105559 184105757 + 3 NA intron (NM_153343, intron 6 of 7) intron (NM_153343, intron 6 of 7) 112215 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 824-39 chr5 74049853 74050318 + 3 NA Intergenic Intergenic 236539 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 193-204 chr8 120677654 120677720 + 3 NA intron (NM_021021, intron 2 of 6) MIRb|SINE|MIR -83566 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 718-5 chr1 81270111 81270573 + 3 NA Intergenic Intergenic -35850 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 495-25 chr10 43552333 43552518 + 3 NA Intergenic L1M4|LINE|L1 16034 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 534-197 chr5 37995238 37995525 + 3 NA Intergenic Intergenic -30316 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 359-318 chr3 71971665 71971811 + 3 NA Intergenic L1MB2|LINE|L1 128717 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 247-420 chr8 137176220 137176396 + 3 NA Intergenic L2a|LINE|L2 237280 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 1006-16 chr2 122125683 122126138 + 3 NA Intergenic L1MA4A|LINE|L1 370259 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 287-14 chr1 79662626 79662829 + 3 NA Intergenic L2c|LINE|L2 -655997 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 306-253 chr2 134779980 134780141 + 3 NA Intergenic Intergenic -58556 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 415-234 chr6 45326436 45326657 + 3 NA intron (NM_181356, intron 2 of 12) intron (NM_181356, intron 2 of 12) -1771 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 389-308 chr5 179247471 179247646 + 3 NA intron (NM_014244, intron 3 of 21) L1MB7|LINE|L1 97903 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 758-45 chr2 129065859 129066315 + 3 NA Intergenic Intergenic 201487 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 894-37 chr5 140760756 140761452 + 3 NA Intergenic Intergenic -25032 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 461-280 chr8 135010210 135010390 + 3 NA Intergenic MIR|SINE|MIR 160365 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 508-219 chr7 16139407 16139680 + 3 NA intron (NM_001101426, intron 9 of 9) MADE1|DNA|TcMar-Mariner -70943 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 1034-12 chr2 118958096 118958659 + 3 NA intron (NM_006770, intron 1 of 16) L1PB1|LINE|L1 16208 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 583-131 chr5 19028123 19028451 + 3 NA Intergenic L1MEg|LINE|L1 857985 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 686-90 chrX 18791044 18791460 + 3 NA intron (NM_152226, intron 13 of 17) L1MB8|LINE|L1 -98565 NR_046642 100874004 NR_046642 PPEF1-AS1 - PPEF1 antisense RNA 1 ncRNA 555-41 chr12 33767812 33768008 + 3 NA Intergenic L1ME1|LINE|L1 -254586 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 639-22 chr11 82781846 82782112 + 3 NA Intergenic L1MC2|LINE|L1 -48115 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 630-23 chr12 124061425 124061846 + 3 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 88420 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 523-118 chr19 37697670 37698040 + 3 NA 3' UTR (NM_032689, exon 5 of 5) 3' UTR (NM_032689, exon 5 of 5) -5540 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 347-116 chr13 112046737 112046885 + 3 NA intron (NR_120392, intron 1 of 3) L1M4a1|LINE|L1 -20338 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 598-163 chrY 56834644 56834924 + 3 NA Intergenic Intergenic -119471 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 330-549 chr9 27958668 27958853 + 3 NA intron (NM_001354574, intron 5 of 5) MER44A|DNA|TcMar-Tigger -384894 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 328-30 chr1 192492693 192492865 + 3 NA Intergenic HERV16-int|LTR|ERVL -82994 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 522-59 chr12 28402207 28402483 + 3 NA intron (NM_001352082, intron 9 of 13) L1MCa|LINE|L1 -211607 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 832-31 chr4 63166121 63166593 + 3 NA Intergenic L1PREC2|LINE|L1 -1004592 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 534-4 chr1 56130310 56130492 + 3 NA Intergenic AluJr|SINE|Alu 185314 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 352-167 chr16 8426459 8426659 + 3 NA Intergenic Intergenic 163279 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 626-104 chr4 91415574 91415978 + 3 NA intron (NM_001145065, intron 10 of 10) L1PA11|LINE|L1 861526 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 519-160 chr4 36624884 36625159 + 3 NA intron (NR_149124, intron 1 of 4) intron (NR_149124, intron 1 of 4) 16879 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 661-53 chr2 189493129 189493513 + 3 NA Intergenic L1M5|LINE|L1 51847 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 316-189 chr16 2380894 2381074 + 3 NA intron (NR_003574, intron 7 of 16) intron (NR_003574, intron 7 of 16) 40062 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 480-320 chrX 62664363 62664548 + 3 NA Intergenic ALR/Alpha|Satellite|centr 686877 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 575-6 chr1 69361503 69361734 + 3 NA Intergenic MER51-int|LTR|ERV1 -71637 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 684-27 chr12 62177990 62178380 + 3 NA intron (NM_178539, intron 1 of 4) AluJr4|SINE|Alu 14654 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 382-415 chr8 107879584 107879779 + 3 NA Intergenic Intergenic 202258 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 202-278 chrX 40845016 40845126 + 3 NA Intergenic L2c|LINE|L2 -11875 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 813-40 chr7 72173803 72174251 + 3 NA intron (NM_001363460, intron 2 of 5) L1ME1|LINE|L1 163364 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 560-93 chr20 10140755 10140997 + 3 NA intron (NR_040710, intron 2 of 4) L4_C_Mam|LINE|RTE-X -77922 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 702-63 chr3 81447583 81447948 + 3 NA Intergenic Intergenic 313880 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 513-131 chr2 84738542 84738805 + 3 NA intron (NM_001370, intron 62 of 76) L1PA17|LINE|L1 142411 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 459-23 chr10 1502979 1503319 + 3 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -23481 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168 ADARB2 antisense RNA 1 ncRNA 511-72 chr15 27221672 27222071 + 3 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -60552 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 421-174 chr21 27099421 27099639 + 3 NA Intergenic AluSx1|SINE|Alu -132442 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 523-155 chr20 48003300 48003604 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR -13335 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 421-266 chr6 140030785 140030955 + 3 NA intron (NR_121623, intron 1 of 1) MLT1G1|LTR|ERVL-MaLR -39609 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 384-159 chr2 18649399 18649661 + 3 NA Intergenic Intergenic -59950 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 284-407 chr8 86470504 86470605 + 3 NA Intergenic L1MD2|LINE|L1 38132 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 557-67 chr16 74056818 74057101 + 3 NA Intergenic AluJr|SINE|Alu 158562 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 524-169 chr4 46031590 46031862 + 3 NA Intergenic Intergenic 92328 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 620-147 chr8 106683804 106684044 + 3 NA intron (NM_181354, intron 3 of 13) L1ME4b|LINE|L1 26116 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 634-133 chr6 61219873 61220232 + 3 NA Intergenic Intergenic -354078 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 395-146 chr18 76627776 76627950 + 3 NA intron (NR_110784, intron 4 of 4) L1M4|LINE|L1 8086 NR_120419 400660 Hs.131718 NR_120419 ENSG00000266256 LINC00683 - long intergenic non-protein coding RNA 683 ncRNA 505-116 chr18 2471572 2471843 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 99798 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 440-233 chr7 25186796 25187000 + 3 NA Intergenic Intergenic -6544 NM_001371352 492-105 chr16 86420758 86421005 + 3 NA Intergenic L1MC4a|LINE|L1 -75202 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 410-257 chr6 37817132 37817396 + 3 NA Intergenic L2c|LINE|L2 -2463 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 666-30 chr14 67637947 67638358 + 3 NA intron (NM_001172, intron 2 of 7) MLT1J1|LTR|ERVL-MaLR 18232 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 1084-8 chr19 37612736 37613441 + 3 NA exon (NM_001172226, exon 4 of 4) exon (NM_001172226, exon 4 of 4) 18212 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 404-212 chr3 60679758 60680048 + 3 NA intron (NM_001320900, intron 5 of 9) L1ME3C|LINE|L1 -62033 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 475-22 chr10 44041177 44041473 + 3 NA Intergenic L1MEb|LINE|L1 128923 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 512-272 chr8 91586105 91586489 + 3 NA Intergenic L1M3c|LINE|L1 336978 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 390-95 chr14 56737953 56738143 + 3 NA Intergenic Intergenic 67619 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 500-75 chr13 96839415 96839617 + 3 NA TTS (NM_153456) TTS (NM_153456) 144656 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 601-147 chr8 126283055 126283446 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -42245 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 279-36 chr10 48342824 48342982 + 3 NA intron (NM_001323302, intron 3 of 13) L2c|LINE|L2 36226 NR_136584 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 453-172 chr3 187695234 187695429 + 3 NA Intergenic L2b|LINE|L2 -7035 NR_034062 100131635 Hs.434448 NR_034062 ENSG00000228804 LOC100131635 - hCG1645011-like ncRNA 811-29 chr20 42142027 42142355 + 3 NA intron (NM_133170, intron 18 of 31) intron (NM_133170, intron 18 of 31) -523814 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 478-67 chr12 132926542 132926809 + 3 NA exon (NM_183238, exon 5 of 5) exon (NM_183238, exon 5 of 5) 29631 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 480-312 chr9 28967953 28968210 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -79126 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 411-95 chr14 86069612 86069781 + 3 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 135018 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 355-107 chr11 107457160 107457342 + 3 NA intron (NM_152434, intron 1 of 17) intron (NM_152434, intron 1 of 17) 595 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 435-153 chr3 78486809 78487101 + 3 NA Intergenic Intergenic -437992 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 733-81 chr8 124811098 124811474 + 3 NA Intergenic L1MEc|LINE|L1 -10699 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 765-24 chr18 72369186 72369736 + 3 NA Intergenic Intergenic 174881 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 206-255 chr7 69001680 69001811 + 3 NA Intergenic Intergenic 595879 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 323-400 chr5 19268621 19268817 + 3 NA Intergenic Intergenic 617553 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 585-129 chr5 145363878 145364203 + 3 NA Intergenic Intergenic 471302 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 360-146 chr15 88165497 88165651 + 3 NA intron (NM_001007156, intron 5 of 15) intron (NM_001007156, intron 5 of 15) 40400 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 567-90 chr2 125020003 125020237 + 3 NA Intergenic L1M4b|LINE|L1 994833 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 388-288 chr5 105465616 105465821 + 3 NA Intergenic Intergenic 366244 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 590-91 chr20 41935096 41935441 + 3 NA Intergenic Intergenic -316891 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 312-246 chr2 100147702 100147854 + 3 NA Intergenic MIRb|SINE|MIR -5188 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 352-101 chr12 41389461 41389626 + 3 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -48196 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 398-300 chr6 105078191 105078408 + 3 NA intron (NM_001004317, intron 3 of 3) intron (NM_001004317, intron 3 of 3) 58047 NM_147147 11149 Hs.221660 NM_007073 ENSG00000112276 BVES CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1 blood vessel epicardial substance protein-coding 769-41 chr3 159550365 159550677 + 3 NA intron (NM_001197108, intron 1 of 6) L1ME3|LINE|L1 218091 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 644-38 chr2 14508007 14508261 + 3 NA Intergenic Intergenic -107176 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 203-220 chr7 63978649 63978764 + 3 NA Intergenic L1MA9|LINE|L1 -20100 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 444-220 chr6 78124149 78124352 + 3 NA Intergenic L2c|LINE|L2 415059 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 483-205 chr5 34995279 34995535 + 3 NA Intergenic L2a|LINE|L2 52542 NM_001306173 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 471-144 chr2 237553313 237553507 + 3 NA intron (NM_024101, intron 15 of 15) intron (NM_024101, intron 15 of 15) -13164 NM_015893 51052 Hs.247710 NM_015893 ENSG00000071677 PRLH PRH|PRRP prolactin releasing hormone protein-coding 538-49 chr12 14379702 14380019 + 3 NA intron (NM_001286515, intron 1 of 12) HAL1|LINE|L1 -5421 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 473-231 chr5 145405408 145405574 + 3 NA Intergenic L1MA8|LINE|L1 429851 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 771-6 chr1 224910689 224910983 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -18818 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 701-16 chr12 38597335 38597867 + 3 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 280827 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 918-6 chr11 89216671 89217197 + 3 NA intron (NM_000372, intron 2 of 4) MLT1J|LTR|ERVL-MaLR 39059 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 605-65 chr20 33964996 33965315 + 3 NA Intergenic Intergenic -28756 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 709-82 chr7 25317719 25318102 + 3 NA Intergenic Intergenic -89424 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 489-75 chr14 63091339 63091520 + 3 NA Intergenic MIRb|SINE|MIR -45971 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 350-533 chr8 120343092 120343355 + 3 NA intron (NM_021110, intron 44 of 47) intron (NM_021110, intron 44 of 47) 101927 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 436-256 chr5 148755001 148755259 + 3 NA Intergenic L1MA10|LINE|L1 -71463 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 464-179 chr4 43973122 43973329 + 3 NA Intergenic Intergenic -43636 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 478-20 chr10 10578673 10578953 + 3 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 116263 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 347-408 chr5 115661833 115662025 + 3 NA intron (NR_104674, intron 3 of 4) intron (NR_104674, intron 3 of 4) 10723 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 661-59 chr22 27074039 27074539 + 3 NA Intergenic UCON132b|DNA|hAT-Tip100 -13771 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 341-371 chr4 30715182 30715401 + 3 NA Intergenic Intergenic -5078 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 479-78 chr16 82952864 82953162 + 3 NA TTS (NR_110937) TTS (NR_110937) 37285 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 521-213 chr6 41392721 41393033 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR 57269 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 364-195 chr2 13228673 13228854 + 3 NA Intergenic Intergenic -221750 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 1267-7 chr22 44136805 44137428 + 3 NA intron (NM_001243386, intron 7 of 11) intron (NM_001243386, intron 7 of 11) -35840 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 584-72 chr2 61305573 61305985 + 3 NA intron (NM_014709, intron 27 of 79) intron (NM_014709, intron 27 of 79) 111598 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 480-294 chr8 86676995 86677209 + 3 NA intron (NM_019098, intron 3 of 17) MLT1C|LTR|ERVL-MaLR 66573 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 904-25 chr2 144927704 144928363 + 3 NA intron (NR_033870, intron 3 of 4) L1M4|LINE|L1 260066 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 436-153 chr2 227421225 227421483 + 3 NA Intergenic Intergenic -42048 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 377-229 chr2 167819732 167819889 + 3 NA intron (NM_020981, intron 1 of 1) intron (NM_020981, intron 1 of 1) 1138 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 518-270 chr7 34240048 34240330 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X 334650 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 630-3 chr1 100806157 100806452 + 3 NA Intergenic Intergenic 86562 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 222-174 chr2 63366901 63367041 + 3 NA intron (NM_001354045, intron 12 of 12) MIRb|SINE|MIR 71036 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 286-422 chr7 53522085 53522257 + 3 NA Intergenic L1MCb|LINE|L1 289760 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 728-9 chr1 240754652 240755045 + 3 NA Intergenic L1M5|LINE|L1 -142693 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 332-216 chr18 71739102 71739253 + 3 NA intron (NR_126324, intron 1 of 4) intron (NR_126324, intron 1 of 4) 43049 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 811-45 chr8 77303858 77304302 + 3 NA Intergenic Intergenic -146617 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 614-133 chr8 81131390 81131637 + 3 NA Intergenic AluSz|SINE|Alu -19445 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 808-20 chr16 72433023 72433426 + 3 NA intron (NR_159371, intron 3 of 5) L1M5|LINE|L1 231746 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 352-287 chr20 53451622 53451837 + 3 NA intron (NM_173485, intron 2 of 2) L2c|LINE|L2 -101041 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 825-29 chr3 18580632 18581019 + 3 NA Intergenic L1MD3|LINE|L1 -135233 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 559-107 chr20 14017396 14017691 + 3 NA intron (NM_001351663, intron 2 of 17) L1MB4|LINE|L1 22027 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 573-75 chr17 70576885 70577124 + 3 NA Intergenic Intergenic 407469 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 826-32 chr20 6877664 6878211 + 3 NA Intergenic Intergenic 110251 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 495-201 chr5 78945958 78946257 + 3 NA intron (NM_198709, intron 5 of 7) intron (NM_198709, intron 5 of 7) 39203 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 748-35 chr15 63686075 63686405 + 3 NA intron (NM_003922, intron 34 of 77) L1MC4a|LINE|L1 -85413 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 351-470 chr8 34374027 34374239 + 3 NA Intergenic MIR3|SINE|MIR -409788 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 709-11 chr11 24009445 24009841 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -487410 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 364-87 chr11 39500249 39500481 + 3 NA Intergenic Intergenic 792765 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 430-223 chr4 137723866 137724049 + 3 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat 178226 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 353-557 chr9 80491127 80491328 + 3 NA Intergenic Intergenic 516204 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 393-149 chr19 29872122 29872262 + 3 NA Intergenic (TTTTA)n|Simple_repeat|Simple_repeat -51465 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 1032-11 chr20 59654512 59655234 + 3 NA intron (NM_001281507, intron 1 of 12) L1ME2|LINE|L1 -21788 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 545-171 chr5 5504554 5504830 + 3 NA Intergenic L1MD1|LINE|L1 82015 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 491-162 chr3 3224663 3224862 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie -45045 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 727-78 chr7 100690970 100691440 + 3 NA Intergenic MER20|DNA|hAT-Charlie -1757 NM_022574 64599 Hs.414396 NM_022574 ENSG00000146830 GIGYF1 GYF1|PERQ1 GRB10 interacting GYF protein 1 protein-coding 363-303 chr3 162656125 162656346 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity 647066 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 620-108 chr5 27850901 27851243 + 3 NA Intergenic Intergenic 378780 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 610-35 chr12 47476234 47476563 + 3 NA Intergenic L1PA15-16|LINE|L1 61390 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 381-40 chr10 22880384 22880534 + 3 NA Intergenic L1PB3|LINE|L1 -47565 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 757-29 chr2 96917709 96918209 + 3 NA intron (NM_001122646, intron 12 of 16) L1M5|LINE|L1 -1147 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 502-2 chr1 37280244 37280502 + 3 NA Intergenic Intergenic 118810 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 649-6 chr1 241836646 241837024 + 3 NA Intergenic L1ME4a|LINE|L1 -11356 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 481-137 chr2 47220903 47221244 + 3 NA non-coding (NR_110207, exon 2 of 3) non-coding (NR_110207, exon 2 of 3) -44137 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 578-84 chr2 67538924 67539157 + 3 NA Intergenic L1PB3|LINE|L1 141707 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 518-104 chr16 83115421 83115833 + 3 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -125329 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 431-116 chr2 12053024 12053352 + 3 NA intron (NR_110196, intron 2 of 5) L2a|LINE|L2 46072 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 571-175 chr8 126075137 126075429 + 3 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -124086 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 427-182 chr4 63348228 63348492 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1061090 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 523-133 chr2 89811486 89811779 + 3 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -173725 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 992-19 chr7 68868130 68868712 + 3 NA Intergenic L1PREC2|LINE|L1 729203 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 328-434 chr5 20146843 20147000 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -158630 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 533-95 chr2 33872315 33872616 + 3 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -144248 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 368-155 chr14 84836170 84836360 + 3 NA Intergenic Intergenic -435667 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 481-13 chr1 211961705 211961953 + 3 NA intron (NM_015434, intron 16 of 19) L1PREC2|LINE|L1 -73724 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 517-162 chr20 56220304 56220565 + 3 NA Intergenic MIRb|SINE|MIR -28298 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 647-63 chr3 19803046 19803317 + 3 NA Intergenic L1PA16|LINE|L1 131036 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 472-108 chr16 7185599 7185858 + 3 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -147117 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 596-111 chr20 31295804 31296135 + 3 NA Intergenic AluJo|SINE|Alu 12616 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 577-82 chr18 75996921 75997245 + 3 NA Intergenic L1MD1|LINE|L1 -125915 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 598-47 chr15 69706683 69706930 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR 114606 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 667-22 chr11 55772672 55773028 + 3 NA promoter-TSS (NM_001001967) promoter-TSS (NM_001001967) -588 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 707-74 chr4 91666684 91666983 + 3 NA Intergenic L1MB7|LINE|L1 610469 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 474-201 chr4 37699107 37699473 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -12914 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 532-188 chr4 89990403 89990764 + 3 NA Intergenic Intergenic 95729 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 826-31 chr20 3192883 3193200 + 3 NA intron (NM_023935, intron 6 of 8) intron (NM_023935, intron 6 of 8) 11641 NM_023935 65992 Hs.471975 NM_023935 ENSG00000198171 DDRGK1 C20orf116|SEMDSH|UFBP1|dJ1187M17.3 DDRGK domain containing 1 protein-coding 896-38 chr8 104895697 104896167 + 3 NA Intergenic Intergenic -306908 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 630-99 chr4 99208088 99208371 + 3 NA intron (NR_132990, intron 4 of 6) intron (NR_132990, intron 4 of 6) 11017 NM_000672 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 390-322 chr6 51379894 51380116 + 3 NA Intergenic Intergenic -241865 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 429-82 chr13 80557178 80557352 + 3 NA Intergenic Intergenic -216139 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 542-156 chr4 128596679 128596988 + 3 NA Intergenic L2b|LINE|L2 168817 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 394-249 chr4 132140121 132140338 + 3 NA Intergenic L1MC3|LINE|L1 375391 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 470-145 chr2 197767069 197767409 + 3 NA intron (NM_033030, intron 6 of 10) intron (NM_033030, intron 6 of 10) 18080 NM_001284362 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 222-80 chr12 37932404 37932561 + 3 NA Intergenic ALR/Alpha|Satellite|centr -384292 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 363-395 chr6 125897027 125897161 + 3 NA intron (NM_001199621, intron 9 of 14) intron (NM_001199621, intron 9 of 14) -22161 NM_001199622 135112 Hs.171426 NM_181782 ENSG00000111912 NCOA7 ERAP140|ESNA1|NCOA7-AS|Nbla00052|Nbla10993|TLDC4|dJ187J11.3 nuclear receptor coactivator 7 protein-coding 679-76 chr3 187378207 187378590 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 10013 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 399-299 chr8 17433441 17433690 + 3 NA Intergenic Intergenic -20214 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 471-251 chr7 38080012 38080192 + 3 NA Intergenic L1MB3|LINE|L1 -98143 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 518-186 chr3 124524345 124524673 + 3 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -60149 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 379-100 chr15 26411224 26411448 + 3 NA Intergenic L2c|LINE|L2 217754 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 441-247 chr7 41833459 41833677 + 3 NA Intergenic Intergenic -130478 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 489-80 chr14 68533263 68533496 + 3 NA intron (NM_001321818, intron 10 of 10) L2|LINE|L2 95408 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 526-220 chr6 145304550 145304881 + 3 NA Intergenic Intergenic 382162 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 270-269 chr4 77225180 77225300 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 68033 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 504-277 chr9 93420475 93420676 + 3 NA Intergenic L1M3c|LINE|L1 31033 NR_136235 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 431-23 chr1 190356164 190356385 + 3 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 119736 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 419-300 chr8 121865707 121865949 + 3 NA Intergenic L2c|LINE|L2 -224388 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 291-299 chr3 157458962 157459115 + 3 NA TTS (NM_001167915) TTS (NM_001167915) 22188 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 439-198 chr4 8924239 8924462 + 3 NA Intergenic L1M1|LINE|L1 -52511 NM_018942 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 285-459 chr9 78197791 78198013 + 3 NA Intergenic Intergenic -38173 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 541-235 chr8 101216954 101217225 + 3 NA Intergenic L1MA5|LINE|L1 -11025 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 394-287 chr6 65076494 65076653 + 3 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -224845 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 889-7 chr12 14735725 14736203 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 35167 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 686-64 chr5 57039593 57039871 + 3 NA Intergenic Intergenic -87602 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 584-78 chr2 105592330 105592684 + 3 NA TTS (NR_038891) TTS (NR_038891) 18052 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 556-99 chr2 66125036 66125366 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 233127 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 381-331 chr6 63340439 63340723 + 3 NA Intergenic L1M2|LINE|L1 -20598 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 585-7 chr1 107301092 107301390 + 3 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 153172 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 717-55 chr3 34458804 34459287 + 3 NA Intergenic L1M2|LINE|L1 660415 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 370-260 chr2 217389249 217389384 + 3 NA intron (NR_026597, intron 8 of 12) intron (NR_026597, intron 8 of 12) 106583 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 326-572 chr9 80461844 80462017 + 3 NA Intergenic L1MC|LINE|L1 486907 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 551-164 chr5 118018107 118018345 + 3 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -264348 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 596-105 chr2 194183536 194183910 + 3 NA Intergenic MIRc|SINE|MIR -160546 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 487-289 chr8 84754592 84754950 + 3 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 48844 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 805-16 chr15 69218391 69218808 + 3 NA intron (NM_001324092, intron 2 of 3) intron (NM_001324092, intron 2 of 3) 57964 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 875-5 chr12 45177973 45178406 + 3 NA intron (NR_037144, intron 1 of 2) L1M3d|LINE|L1 37817 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 850-7 chr10 124274964 124275558 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 143662 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 375-76 chr11 71323866 71324064 + 3 NA Intergenic Intergenic -99169 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 434-274 chr8 25543496 25543851 + 3 NA Intergenic Intergenic 84440 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 290-280 chr3 61118675 61118797 + 3 NA intron (NR_148922, intron 2 of 3) MIR|SINE|MIR 132716 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 502-37 chr10 97041876 97042090 + 3 NA intron (NM_003061, intron 20 of 36) intron (NM_003061, intron 20 of 36) -60773 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 323-84 chr11 55648700 55648875 + 3 NA Intergenic Intergenic -2117 NM_001004059 219431 Hs.553621 NM_001004059 ENSG00000174982 OR4S2 OR11-137|OR4S2P|OST725 olfactory receptor family 4 subfamily S member 2 protein-coding 434-170 chr22 27343397 27343584 + 3 NA Intergenic L1ME1|LINE|L1 32839 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 583-159 chr8 77589286 77589542 + 3 NA Intergenic Intergenic 138717 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 426-261 chr6 155747687 155747864 + 3 NA Intergenic Intergenic -199022 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 397-240 chr5 5680697 5680931 + 3 NA Intergenic Intergenic 258137 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 438-85 chr15 99645865 99646063 + 3 NA intron (NM_001365201, intron 4 of 11) intron (NM_001365201, intron 4 of 11) 12986 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 880-27 chr3 3942308 3942798 + 3 NA Intergenic L1MA1|LINE|L1 -141678 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 531-60 chr14 52084825 52085090 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -15898 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 425-125 chr19 36523761 36523972 + 3 NA intron (NM_001012756, intron 2 of 3) AluSg|SINE|Alu 4405 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 428-202 chr3 181023436 181023634 + 3 NA Intergenic L1MB7|LINE|L1 -33145 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 500-72 chr12 93619483 93619786 + 3 NA Intergenic MIRb|SINE|MIR 46959 NM_001270471 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 287-421 chr8 134055450 134055677 + 3 NA Intergenic Intergenic 169067 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 466-68 chr12 106090368 106090788 + 3 NA intron (NM_014840, intron 2 of 6) MIR|SINE|MIR 49455 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 536-16 chr1 164334502 164334835 + 3 NA Intergenic Intergenic -224692 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 388-53 chr10 105200930 105201129 + 3 NA intron (NM_014978, intron 15 of 26) intron (NM_014978, intron 15 of 26) -534813 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 408-131 chr16 60858670 60858878 + 3 NA Intergenic Intergenic 196992 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 514-194 chr3 174103374 174103645 + 3 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -182713 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 477-58 chr11 50569520 50569740 + 3 NA Intergenic ALR/Alpha|Satellite|centr 160483 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 503-219 chr4 112723801 112724034 + 3 NA intron (NM_001354269, intron 1 of 43) intron (NM_001354269, intron 1 of 43) 17899 NM_001354269 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 469-139 chr2 114190051 114190242 + 3 NA Intergenic AluSc|SINE|Alu -210162 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 494-144 chr2 199570284 199570607 + 3 NA Intergenic Intergenic -37623 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 424-228 chr5 111029414 111029660 + 3 NA Intergenic Intergenic -40543 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 822-33 chr2 128971583 128972126 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 107254 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 452 chr1 49693807 49694033 + 3 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -221835 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 406-273 chr7 41481478 41481748 + 3 NA Intergenic Intergenic -212306 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 570-24 chr10 37321927 37322302 + 3 NA intron (NR_104061, intron 3 of 4) HUERS-P3-int|LTR|ERV1 12928 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 380-286 chr4 117112392 117112577 + 3 NA Intergenic Intergenic -26908 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 401-94 chr14 62845223 62845431 + 3 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 200131 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 461-125 chr2 47688289 47688504 + 3 NA Intergenic LTR41|LTR|ERVL -94686 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 707-51 chr2 78785240 78785719 + 3 NA Intergenic Intergenic 239948 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 498-136 chr2 154557446 154557672 + 3 NA Intergenic Intergenic -100121 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 303-169 chr17 68899847 68900034 + 3 NA intron (NM_001288985, intron 21 of 39) L1MB8|LINE|L1 55452 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 401-270 chr5 152113339 152113530 + 3 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 154536 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 488-16 chr1 181581669 181581848 + 3 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 98241 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 1078 chr1 57137922 57138608 + 3 NA intron (NM_001365793, intron 3 of 14) MIR3|SINE|MIR -172125 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 602-35 chr14 75607923 75608253 + 3 NA intron (NM_001195283, intron 1 of 9) intron (NM_001195283, intron 1 of 9) 2548 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 420-159 chr2 193418373 193418558 + 3 NA Intergenic L1ME1|LINE|L1 668620 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 796-6 chr10 67155109 67155477 + 3 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 143027 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 808-64 chrX 136001937 136002300 + 3 NA exon (NM_001042537, exon 6 of 16) exon (NM_001042537, exon 6 of 16) 16683 NM_001330652 10479 Hs.62185 NM_006359 ENSG00000198689 SLC9A6 MRSA|NHE6 solute carrier family 9 member A6 protein-coding 517-30 chr10 41724698 41724948 + 3 NA Intergenic ALR/Alpha|Satellite|centr 643222 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 444-241 chr7 44697637 44697903 + 3 NA exon (NM_001165036, exon 17 of 23) exon (NM_001165036, exon 17 of 23) -50796 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 360-221 chr2 78232366 78232524 + 3 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 58286 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 604-137 chr5 163312565 163312905 + 3 NA Intergenic Intergenic -124836 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 481-251 chr5 92510132 92510430 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR 1061062 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 233-47 chr10 107005112 107005216 + 3 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 159542 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 438-178 chr3 119776294 119776551 + 3 NA Intergenic L1M4|LINE|L1 -4062 NM_003889 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 598-149 chr8 142111207 142111474 + 3 NA Intergenic Intergenic -64999 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 535-3 chr1 5061328 5061645 + 3 NA Intergenic L1MB8|LINE|L1 406877 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 586-145 chr7 99937650 99937983 + 3 NA Intergenic L1M4|LINE|L1 -8196 NM_181538 349149 Hs.647524 NM_181538 ENSG00000176402 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein gamma 3 protein-coding 763-41 chr3 23109880 23110316 + 3 NA Intergenic Intergenic 92480 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 896 chr1 227666422 227666947 + 3 NA intron (NR_102302, intron 5 of 5) intron (NR_102302, intron 5 of 5) 31023 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 546-74 chr14 98436977 98437222 + 3 NA Intergenic Intergenic -274514 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 535-102 chr17 11157094 11157384 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -83974 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 463-288 chr8 98622444 98622604 + 3 NA intron (NM_001256313, intron 4 of 8) Mam_R4|LINE|Dong-R4 195566 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 591-18 chr10 111655314 111655660 + 3 NA Intergenic Intergenic 528278 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 844-53 chr5 56003149 56003514 + 3 NA non-coding (NR_102755, exon 2 of 2) non-coding (NR_102755, exon 2 of 2) 8164 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 488-125 chr2 12308207 12308405 + 3 NA intron (NR_110196, intron 3 of 5) L1M7|LINE|L1 109176 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 481-72 chr12 49610167 49610429 + 3 NA Intergenic L1ME1|LINE|L1 -4659 NR_027450 84070 Hs.524406 NM_032130 ENSG00000135436 FAM186B C12orf25 family with sequence similarity 186 member B protein-coding 579-24 chr11 81832892 81833146 + 3 NA Intergenic L1MA4A|LINE|L1 57817 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 545-189 chr5 107363451 107363912 + 3 NA Intergenic MARNA|DNA|TcMar-Mariner 307256 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 495-45 chr12 43196257 43196516 + 3 NA Intergenic Intergenic 41071 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 1112-15 chr8 132279599 132280284 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 167321 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 861-33 chr8 92330846 92331323 + 3 NA Intergenic L1PA11|LINE|L1 -227699 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 552-151 chr4 38964077 38964432 + 3 NA Intergenic Intergenic 68155 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 334-137 chr14 38182889 38183094 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -24913 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 355-411 chr5 120847491 120847665 + 3 NA Intergenic Intergenic 316114 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 845-37 chr7 72136789 72137229 + 3 NA intron (NM_001363460, intron 2 of 5) LTR19A|LTR|ERV1 200382 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 893-26 chr2 195598001 195598568 + 3 NA Intergenic L1M5|LINE|L1 -58674 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 688-43 chr14 66676008 66676367 + 3 NA intron (NM_001024218, intron 1 of 21) L1PA17|LINE|L1 168780 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 410-24 chr10 11069066 11069240 + 3 NA intron (NM_001326345, intron 1 of 13) Looper|DNA|PiggyBac 36335 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 678-52 chr2 84980274 84980583 + 3 NA intron (NM_020122, intron 1 of 6) intron (NM_020122, intron 1 of 6) 9267 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 704-10 chr10 62697538 62697940 + 3 NA Intergenic Intergenic -106981 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 446-199 chr3 118535191 118535383 + 3 NA intron (NR_135547, intron 3 of 3) intron (NR_135547, intron 3 of 3) -106481 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 221-38 chr10 75997289 75997423 + 3 NA intron (NR_131178, intron 3 of 7) L1ME4a|LINE|L1 214595 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 648-2 chr1 64458222 64458647 + 3 NA Intergenic Intergenic -11695 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 362-160 chr14 87381034 87381204 + 3 NA Intergenic Intergenic 274175 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 430-167 chr2 188271979 188272217 + 3 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 15593 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 803-19 chr18 5277660 5278093 + 3 NA Intergenic L1MC4a|LINE|L1 17850 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 697-53 chr4 367672 368092 + 3 NA intron (NM_003441, intron 3 of 3) L1PA7|LINE|L1 17725 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 440-77 chr15 48757371 48757674 + 3 NA intron (NM_014985, intron 19 of 25) MIR3|SINE|MIR 53547 NM_001194998 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 871-40 chr8 124351179 124351671 + 3 NA intron (NM_194291, intron 1 of 6) Tigger6a|DNA|TcMar-Tigger 21274 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 533-84 chr17_GL000205v2_random 10853 11078 + 3 NA Intergenic CER|Satellite|Satellite 47001 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 343-523 chr8 4576616 4576870 + 3 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 418171 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 494-60 chr13 102760436 102760685 + 3 NA Intergenic Intergenic -1488 NM_001146197 643677 Hs.368382 NM_001146197 ENSG00000175820 CCDC168 C13orf40 coiled-coil domain containing 168 protein-coding 464-145 chr20 39942687 39942964 + 3 NA Intergenic Intergenic -61636 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 353-469 chr6 159454941 159455180 + 3 NA Intergenic Intergenic 71529 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 520-316 chr8 139884559 139884904 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -181608 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 283-51 chr10 52600026 52600138 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -129549 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 757-15 chr14 51051953 51052280 + 3 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 43588 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 829-44 chr8 49351870 49352309 + 3 NA Intergenic Intergenic 160091 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 503-279 chr8 92684248 92684566 + 3 NA Intergenic Intergenic -28913 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 557-14 chr10 13636624 13636855 + 3 NA Intergenic L1ME3A|LINE|L1 49774 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 501 chr1 55549560 55549825 + 3 NA Intergenic Intergenic 324051 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 554-159 chr4 67192767 67193110 + 3 NA Intergenic Intergenic 229062 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 295-325 chr4 33813511 33813717 + 3 NA Intergenic L1MEd|LINE|L1 226279 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 457-264 chr8 125843758 125844010 + 3 NA Intergenic Intergenic 107313 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 355-35 chr10 16516968 16517219 + 3 NA intron (NM_001010908, intron 1 of 1) intron (NM_001010908, intron 1 of 1) 4786 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 502-273 chr8 118986530 118986761 + 3 NA intron (NM_001324095, intron 1 of 7) L1MB5|LINE|L1 34382 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 437-9 chr1 118499031 118499247 + 3 NA Intergenic L1M4a1|LINE|L1 -313911 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 347-309 chr3 85871278 85871486 + 3 NA intron (NM_001256502, intron 3 of 10) intron (NM_001256502, intron 3 of 10) -43332 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 297-272 chr21 15206813 15206983 + 3 NA Intergenic Intergenic -141898 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 580-162 chr6 18106244 18106556 + 3 NA Intergenic L1MEf|LINE|L1 16277 NM_198586 378884 Hs.348351 NM_198586 ENSG00000187566 NHLRC1 EPM2A|EPM2B|MALIN|bA204B7.2 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding 650-129 chr8 105062992 105063332 + 3 NA Intergenic Intergenic -255276 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 517-140 chr2 128811061 128811338 + 3 NA Intergenic Intergenic -53401 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 450-233 chr5 12377994 12378294 + 3 NA Intergenic L1ME1|LINE|L1 -196713 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 621-21 chr11 78921889 78922387 + 3 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) -347274 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 964-19 chr21 17875857 17876365 + 3 NA intron (NR_024354, intron 1 of 2) L2b|LINE|L2 9497 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 468-342 chrUn_KI270442v1 78883 79109 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 685-37 chr18 75008612 75009065 + 3 NA intron (NM_017757, intron 7 of 7) L1M5|LINE|L1 196675 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 832-7 chr12 125759182 125759756 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 137017 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 759-73 chr8 90417094 90417496 + 3 NA Intergenic Intergenic 188768 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 581-131 chr5 13140195 13140521 + 3 NA Intergenic Intergenic -107472 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 311-74 chr10 131013754 131013924 + 3 NA Intergenic Intergenic -51171 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 607-10 chr1 118187791 118188047 + 3 NA Intergenic Intergenic -2691 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 623-109 chr5 97319047 97319407 + 3 NA Intergenic L1M5|LINE|L1 -135980 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 352-191 chr18 7951730 7951946 + 3 NA intron (NM_002845, intron 6 of 30) intron (NM_002845, intron 6 of 30) 384522 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 725-30 chr19 29339624 29339990 + 3 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -126656 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 384-254 chr4 38569918 38570094 + 3 NA intron (NR_146991, intron 2 of 2) intron (NR_146991, intron 2 of 2) 6003 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 668-98 chr7 98099847 98100206 + 3 NA Intergenic L1MB7|LINE|L1 -6836 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 624-47 chr16 56639857 56640181 + 3 NA TTS (NM_005946) TTS (NM_005946) 1353 NM_005946 4489 Hs.655199 NM_005946 ENSG00000205362 MT1A MT-1A|MT-IA|MT1|MT1S|MTC metallothionein 1A protein-coding 521-10 chr1 113626740 113626982 + 3 NA intron (NM_001142782, intron 9 of 20) L1MA3|LINE|L1 132294 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 304-186 chr16 74458532 74458668 + 3 NA intron (NR_027264, intron 24 of 26) AluJr|SINE|Alu -37130 NM_001011880 497190 Hs.454670 NM_001011880 ENSG00000140839 CLEC18B MRCL2 C-type lectin domain family 18 member B protein-coding 516-146 chr2 241006650 241006890 + 3 NA intron (NM_001080437, intron 1 of 31) L1MC4|LINE|L1 8152 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 832-41 chr7 37128188 37128663 + 3 NA intron (NM_001206480, intron 14 of 21) intron (NM_001206480, intron 14 of 21) 130629 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 817-12 chr12 119161378 119161863 + 3 NA 3' UTR (NM_194286, exon 13 of 13) 3' UTR (NM_194286, exon 13 of 13) 14864 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 397-86 chr14 51963292 51963436 + 3 NA intron (NM_001243773, intron 3 of 3) intron (NM_001243773, intron 3 of 3) -26182 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 711-69 chr8 91305319 91305769 + 3 NA intron (NM_134266, intron 4 of 18) intron (NM_134266, intron 4 of 18) 56225 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 1821 chr2 95217345 95218396 + 3 NA Intergenic Intergenic 52061 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 402-203 chr3 8400933 8401191 + 3 NA intron (NR_033378, intron 3 of 3) L1ME3A|LINE|L1 100596 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 300-396 chr6 87842799 87842970 + 3 NA intron (NR_110869, intron 2 of 4) intron (NR_110869, intron 2 of 4) 58024 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 1207-11 chr8 48743622 48744247 + 3 NA Intergenic L1ME1|LINE|L1 -8623 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 507-82 chr14 62192857 62193151 + 3 NA Intergenic L1MC1|LINE|L1 -53031 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 885-19 chr5 46309822 46310292 + 3 NA Intergenic ALR/Alpha|Satellite|centr -613677 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 390-77 chr12 97422938 97423146 + 3 NA Intergenic MER72|LTR|ERV1 -39734 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 517-125 chr2 49310896 49311158 + 3 NA Intergenic L1PB4|LINE|L1 -156500 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 523-107 chr17 57985658 57985970 + 3 NA intron (NM_001330393, intron 1 of 6) intron (NM_001330393, intron 1 of 6) 2440 NM_001330393 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 479-105 chr2 82795920 82796132 + 3 NA Intergenic Intergenic -60777 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 283-209 chr19 36992696 36992849 + 3 NA intron (NM_001204839, intron 8 of 8) L1MB7|LINE|L1 76440 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 517-304 chrY 56836284 56836479 + 3 NA Intergenic Intergenic -117874 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 519-194 chr6 40602413 40602619 + 3 NA Intergenic Intergenic -15152 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 597-75 chr2 113105274 113105547 + 3 NA Intergenic Intergenic -12483 NM_173841 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 458-178 chr3 145471674 145471937 + 3 NA Intergenic L1M4|LINE|L1 597380 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 836-52 chr6 66122416 66122910 + 3 NA Intergenic L1PB3|LINE|L1 334784 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 286-306 chr4 31977112 31977247 + 3 NA Intergenic Intergenic -20200 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 577-57 chr14 40207611 40207940 + 3 NA Intergenic Intergenic -746936 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 539-18 chr1 224491124 224491481 + 3 NA intron (NM_001322302, intron 2 of 6) intron (NM_001322302, intron 2 of 6) 56453 NR_136291 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 388-232 chr3 117982197 117982412 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -291379 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 687-57 chr2 43117988 43118422 + 3 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -15760 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 606-42 chr12 125608468 125608754 + 3 NA intron (NM_052907, intron 5 of 8) L1MB7|LINE|L1 -13841 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 419-29 chr10 38577456 38577678 + 3 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -119029 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 241-371 chr7 51504387 51504485 + 3 NA Intergenic Intergenic -111180 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 349-358 chr3 195282355 195282621 + 3 NA intron (NM_012287, intron 22 of 22) intron (NM_012287, intron 22 of 22) -11329 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 402-172 chr2 161781277 161781427 + 3 NA intron (NM_001354453, intron 2 of 24) intron (NM_001354453, intron 2 of 24) 156936 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 501-227 chr6 56403341 56403607 + 3 NA Intergenic MIRb|SINE|MIR -9346 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 551-207 chr8 51130312 51130531 + 3 NA Intergenic L2a|LINE|L2 679024 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 537-126 chr2 125976358 125976725 + 3 NA Intergenic Intergenic 141444 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 436-116 chr18 78041697 78041965 + 3 NA Intergenic L1MC5a|LINE|L1 -48104 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 463-196 chr3 138975462 138975679 + 3 NA Intergenic Intergenic 28353 NM_001040061 401089 Hs.591303 NM_001040061 ENSG00000206262 FOXL2NB C3orf72 FOXL2 neighbor protein-coding 352-318 chr3 67086079 67086278 + 3 NA Intergenic L1MA3|LINE|L1 87871 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 991-23 chr7 4403645 4404178 + 3 NA Intergenic Intergenic -269074 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 591-95 chr22 47910515 47910866 + 3 NA Intergenic L1MEf|LINE|L1 279016 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 683-4 chr1 245883378 245883778 + 3 NA intron (NM_022743, intron 8 of 11) intron (NM_022743, intron 8 of 11) 533834 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 718-78 chr6 5766052 5766410 + 3 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) -70959 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 458-128 chr2 64976345 64976578 + 3 NA Intergenic Intergenic -12018 NM_001193493 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 456-299 chr7 42755083 42755353 + 3 NA Intergenic Intergenic -48771 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 472-122 chr17 51568154 51568356 + 3 NA Intergenic Intergenic 132828 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 656-66 chr2 168445090 168445446 + 3 NA Intergenic Intergenic -11004 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 438-89 chr16 86866016 86866181 + 3 NA Intergenic Intergenic 144007 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 569-75 chr18 44015275 44015551 + 3 NA Intergenic L1MEd|LINE|L1 516284 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 606-17 chr10 28774467 28774777 + 3 NA intron (NR_120652, intron 2 of 3) HAL1ME|LINE|L1 21428 NR_038375 100507605 Hs.119207 NR_038374 ENSG00000235824 LINC00837 - long intergenic non-protein coding RNA 837 ncRNA 581-116 chr4 65888631 65888853 + 3 NA Intergenic MIR|SINE|MIR -218247 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 343-503 chr7 41555610 41555850 + 3 NA Intergenic PRIMA41-int|LTR|ERV1 -138189 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 428-81 chr15 96556083 96556340 + 3 NA Intergenic Intergenic 222446 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 510-130 chr2 7753904 7754242 + 3 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR 145582 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 376-82 chr12 41479705 41479872 + 3 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 42049 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 313-330 chr3 25167528 25167706 + 3 NA intron (NM_001290216, intron 3 of 10) HAL1|LINE|L1 -173185 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 470-7 chr1 113511979 113512240 + 3 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 121594 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 426-283 chr8 21028876 21029091 + 3 NA Intergenic Intergenic 54997 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 691-53 chr3 144203604 144203956 + 3 NA Intergenic FLAM_C|SINE|Alu 230699 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 359-157 chr15 67129469 67129635 + 3 NA intron (NM_001145102, intron 1 of 8) MER44A|DNA|TcMar-Tigger 3836 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 716-31 chr17 71264838 71265280 + 3 NA Intergenic Intergenic -62880 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 502-151 chr2 169241235 169241570 + 3 NA intron (NM_004525, intron 24 of 78) intron (NM_004525, intron 24 of 78) 121132 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 775-48 chr2 119614421 119614738 + 3 NA intron (NR_073132, intron 14 of 24) THE1C|LTR|ERVL-MaLR -64588 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 316-293 chr2 144304800 144305003 + 3 NA intron (NM_001354354, intron 1 of 12) L1M4|LINE|L1 -9588 NM_001354361 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 756-13 chr13 97582454 97582972 + 3 NA Intergenic Intergenic 148544 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 391-209 chr20 45146050 45146272 + 3 NA Intergenic L1M4b|LINE|L1 -21696 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 465-177 chr3 98361896 98362092 + 3 NA Intergenic Intergenic 8140 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 528-226 chr6 66043586 66043900 + 3 NA Intergenic Intergenic 255864 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 468-266 chr5 127964761 127965145 + 3 NA TTS (NR_152798) TTS (NR_152798) 118222 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 465-61 chr12 41651567 41651757 + 3 NA Intergenic Intergenic -112527 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 319-577 chr9 90061051 90061231 + 3 NA Intergenic Intergenic -19642 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 398-21 chr1 187019007 187019180 + 3 NA Intergenic Intergenic -73749 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 583-2 chr1 56313323 56313588 + 3 NA Intergenic HAL1ME|LINE|L1 -101508 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 641-44 chr15 96879296 96879629 + 3 NA Intergenic Intergenic 96027 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 1079-9 chr5 87339860 87340405 + 3 NA intron (NM_022650, intron 5 of 24) L2c|LINE|L2 -16504 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 782-41 chr22 16931247 16931702 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 76748 NM_001037814 128954 Hs.434113 NM_001037814 ENSG00000215568 GAB4 - GRB2 associated binding protein family member 4 protein-coding 750-33 chr2 34651935 34652353 + 3 NA Intergenic Intergenic -25413 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 419-139 chr2 59898978 59899244 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 483925 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 448-294 chr9 24273863 24274079 + 3 NA Intergenic L1ME3B|LINE|L1 271705 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 499-227 chr6 96163890 96164073 + 3 NA intron (NM_006581, intron 2 of 2) MER4B|LTR|ERV1 148007 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 351-382 chr5 46276448 46276586 + 3 NA Intergenic ALR/Alpha|Satellite|centr -580137 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 560-32 chr12 8743763 8744091 + 3 NA intron (NR_147950, intron 2 of 8) intron (NR_147950, intron 2 of 8) 45936 NM_001297776 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 785-17 chr11 82524246 82524536 + 3 NA Intergenic MIRb|SINE|MIR -120478 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 671-55 chr20 40116711 40117036 + 3 NA Intergenic Kanga1d|DNA|TcMar-Tc2 112412 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 861-24 chr4 37085017 37085477 + 3 NA Intergenic L1MB7|LINE|L1 83468 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 637-61 chr2 60019041 60019484 + 3 NA Intergenic L1ME3B|LINE|L1 363774 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 594-145 chr8 56461923 56462189 + 3 NA intron (NR_125813, intron 1 of 3) intron (NR_125813, intron 1 of 3) -15415 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 359-83 chr11 28491092 28491338 + 3 NA Intergenic Intergenic -13667 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 498-204 chr5 2961161 2961358 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 43405 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 1074-15 chr7 64506370 64507022 + 3 NA Intergenic Intergenic 56375 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 591-84 chr2 225933825 225934139 + 3 NA Intergenic MIR3|SINE|MIR -208812 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 638-29 chr12 18907443 18907895 + 3 NA Intergenic L2c|LINE|L2 169550 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 774-57 chr3 50876073 50876435 + 3 NA intron (NM_004947, intron 3 of 52) intron (NM_004947, intron 3 of 52) 201174 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 670-76 chr3 71742857 71743290 + 3 NA intron (NM_173359, intron 1 of 7) L1MEc|LINE|L1 10518 NM_001282886 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 717-90 chr9 88899139 88899555 + 3 NA Intergenic L1MCa|LINE|L1 -91516 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 494-251 chr6 99164837 99165032 + 3 NA Intergenic Intergenic 40325 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 634-147 chr7 112181845 112182345 + 3 NA intron (NM_001363540, intron 1 of 52) MIR|SINE|MIR 24304 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 550-55 chr12 34458938 34459273 + 3 NA Intergenic ALR/Alpha|Satellite|centr 436609 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 543-187 chr4 104795563 104795807 + 3 NA Intergenic Intergenic -300791 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 369-283 chr4 31157201 31157408 + 3 NA Intergenic Intergenic -13840 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 290-492 chrX 58297778 58297930 + 3 NA Intergenic ALR/Alpha|Satellite|centr -387221 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 343-382 chr4 51929462 51929616 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 85960 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 441-86 chr15 36006914 36007122 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 80162 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 486-185 chr21 30569902 30570163 + 3 NA Intergenic Intergenic -8719 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 485-251 chr6 132075568 132075858 + 3 NA Intergenic L2a|LINE|L2 39550 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 621-47 chr17 34745460 34745857 + 3 NA Intergenic L1ME1|LINE|L1 164909 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 382-193 chr2 63266997 63267190 + 3 NA intron (NR_148704, intron 14 of 18) L1MA7|LINE|L1 -147551 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 482-52 chr11 69232527 69232711 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -61057 NR_104161 338694 Hs.564235 NR_104161 ENSG00000261070 LOC338694 - uncharacterized LOC338694 ncRNA 479-37 chr11 102306634 102306948 + 3 NA Intergenic L3|LINE|CR1 -10693 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 597 chr1 11508879 11509274 + 3 NA intron (NM_020780, intron 3 of 20) L1MEc|LINE|L1 29921 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 1033-13 chr8 119279493 119280083 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -32931 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 711-66 chr7 64462223 64462712 + 3 NA Intergenic L1MA8|LINE|L1 28774 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 271-54 chr10 82063303 82063465 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 169536 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 427-273 chr8 137887996 137888235 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 195430 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 157-124 chr7 103005178 103005240 + 3 NA intron (NR_105043, intron 7 of 20) intron (NR_105043, intron 7 of 20) 31779 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 530-229 chr7 21081176 21081509 + 3 NA Intergenic Intergenic 245911 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 457-192 chr5 4668961 4669170 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 -104416 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 424-222 chr5 82822516 82822702 + 3 NA Intergenic Intergenic -17546 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 275-317 chr6 116982909 116983058 + 3 NA Intergenic L1MEc|LINE|L1 105741 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 456-30 chr10 33396035 33396203 + 3 NA Intergenic MIR|SINE|MIR -61214 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 704-73 chr6 120396892 120397277 + 3 NA Intergenic L1PA16|LINE|L1 381905 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 235-260 chr4 74171921 74172073 + 3 NA intron (NM_001351310, intron 3 of 8) L1ME1|LINE|L1 13879 NR_147097 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 707-52 chr2 85941647 85942109 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 52598 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 581-139 chr5 120412989 120413344 + 3 NA Intergenic Intergenic -51112 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 605-78 chr3 114208029 114208362 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -8788 NM_001282563 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 264-128 chr14 53598417 53598530 + 3 NA Intergenic Intergenic 350011 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 413-198 chr3 136908687 136908870 + 3 NA intron (NM_001291999, intron 1 of 3) MLT1J|LTR|ERVL-MaLR -21724 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 431-132 chr2 57783164 57783439 + 3 NA Intergenic L1ME3E|LINE|L1 -124350 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 857-52 chr8 89113081 89113538 + 3 NA Intergenic L1MA9|LINE|L1 644402 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 633-95 chr5 11922942 11923175 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -18612 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 450-14 chr1 182203955 182204183 + 3 NA non-coding (NR_104175, exon 3 of 3) non-coding (NR_104175, exon 3 of 3) 109992 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 540-217 chr8 122188054 122188497 + 3 NA Intergenic Intergenic 380369 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 552-200 chr7 66264634 66264890 + 3 NA intron (NM_003596, intron 2 of 5) L1M4|LINE|L1 59428 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 595-73 chr18 51914615 51914935 + 3 NA Intergenic L1ME4a|LINE|L1 -425422 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 869-18 chr14 35578264 35578803 + 3 NA intron (NM_014990, intron 36 of 40) intron (NM_014990, intron 36 of 40) 44369 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 405-16 chr1 179395288 179395476 + 3 NA intron (NR_073544, intron 11 of 25) intron (NR_073544, intron 11 of 25) 29338 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 319-24 chr1 158679840 158680072 + 3 NA intron (NM_003126, intron 5 of 51) intron (NM_003126, intron 5 of 51) 6759 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 237-142 chr17 59370803 59370920 + 3 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) 4778 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 402-258 chr5 19742643 19742891 + 3 NA intron (NM_001349559, intron 4 of 12) intron (NM_001349559, intron 4 of 12) 143505 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 591-77 chr2 160607693 160608044 + 3 NA Intergenic Intergenic -114061 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 287-239 chr22 43791406 43791544 + 3 NA intron (NM_022785, intron 2 of 31) L2a|LINE|L2 20830 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 792-54 chr6 54316964 54317287 + 3 NA intron (NM_014464, intron 1 of 10) L2|LINE|L2 8684 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 821-26 chr2 136139525 136140101 + 3 NA Intergenic Intergenic -21658 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 542-198 chr7 28738006 28738263 + 3 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 52001 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 682-45 chr19 40032898 40033216 + 3 NA 3' UTR (NM_001005851, exon 5 of 5) 3' UTR (NM_001005851, exon 5 of 5) 23174 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 426-169 chr21 31627930 31628085 + 3 NA Intergenic Intergenic -31615 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 312-235 chr2 63013187 63013364 + 3 NA intron (NM_001142615, intron 19 of 22) intron (NM_001142615, intron 19 of 22) 34436 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 606-85 chr2 89781393 89781792 + 3 NA Intergenic Intergenic -143685 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 681-75 chr6 86100669 86101025 + 3 NA Intergenic L1PB4|LINE|L1 -422114 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 499-184 chr4 69063381 69063622 + 3 NA intron (NM_001349568, intron 1 of 6) HERV3-int|LTR|ERV1 12237 NM_001349568 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 510-184 chr3 79431860 79432099 + 3 NA intron (NR_110133, intron 2 of 2) Charlie17|DNA|hAT-Charlie 20252 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 527-102 chr16 10224709 10225038 + 3 NA Intergenic Intergenic -41965 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 462-60 chr12 62909901 62910133 + 3 NA intron (NM_020700, intron 1 of 9) L2b|LINE|L2 25133 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 507-109 chr19 27346037 27346286 + 3 NA Intergenic ALR/Alpha|Satellite|centr -447270 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 404-253 chr5 26808644 26808814 + 3 NA Intergenic L1MD3|LINE|L1 229857 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 292-258 chr21 19189586 19189703 + 3 NA Intergenic Intergenic -429832 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 318-164 chr13 93003973 93004103 + 3 NA Intergenic L1M4|LINE|L1 -41303 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 394-126 chr16 63080081 63080310 + 3 NA Intergenic Intergenic -1043757 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 386-97 chr14 59721778 59721998 + 3 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -74868 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 899-17 chr3 20840516 20840979 + 3 NA Intergenic Intergenic 498279 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 442-246 chr6 40706168 40706352 + 3 NA Intergenic LTR85b|LTR|Gypsy? -118896 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 469-11 chr1 105687677 105687909 + 3 NA Intergenic Intergenic -68858 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 967-3 chr11 50476336 50476750 + 3 NA Intergenic ALR/Alpha|Satellite|centr 67396 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 230-342 chr7 14056783 14056926 + 3 NA Intergenic L1ME3F|LINE|L1 -65429 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 465-67 chr12 118435021 118435266 + 3 NA Intergenic Intergenic 58588 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 501-232 chr6 153045617 153045908 + 3 NA intron (NM_012419, intron 1 of 4) L1MEi|LINE|L1 -42947 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 466-92 chr16 35596054 35596367 + 3 NA Intergenic HERVIP10FH-int|LTR|ERV1 -89040 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 392-278 chr6 71197424 71197671 + 3 NA Intergenic L2|LINE|L2 -91264 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 402-199 chr22 28495393 28495598 + 3 NA intron (NM_001145418, intron 2 of 22) HAL1|LINE|L1 35626 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 414-367 chrX 125876004 125876229 + 3 NA Intergenic L1MA2|LINE|L1 -233646 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 476-111 chr17 62004680 62004883 + 3 NA intron (NM_005121, intron 9 of 29) L2a|LINE|L2 60497 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 775-79 chr6 146492638 146493097 + 3 NA Intergenic Intergenic -50966 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 217-210 chr21 19378158 19378258 + 3 NA Intergenic Intergenic 521547 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 387-182 chr2 123438839 123439022 + 3 NA Intergenic Intergenic -365449 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 494-176 chr3 78089298 78089663 + 3 NA Intergenic Intergenic -40517 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 471-66 chr12 48318030 48318223 + 3 NA Intergenic Intergenic -10854 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 386-345 chr8 52134519 52134782 + 3 NA intron (NM_014682, intron 19 of 25) intron (NM_014682, intron 19 of 25) -59712 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 591-150 chr7 7489164 7489544 + 3 NA intron (NM_001037763, intron 13 of 34) intron (NM_001037763, intron 13 of 34) 46519 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 1005 chr1 49432047 49432653 + 3 NA intron (NR_046839, intron 2 of 3) PABL_A|LTR|ERV1 39735 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 446-151 chr2 81060473 81060804 + 3 NA Intergenic L1MA7|LINE|L1 406308 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 567-108 chr22 46169717 46170020 + 3 NA intron (NM_001001928, intron 2 of 7) intron (NM_001001928, intron 2 of 7) 19073 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 237-79 chr12 61028302 61028435 + 3 NA Intergenic L1MDa|LINE|L1 1164471 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 891-11 chr14 52970383 52971019 + 3 NA Intergenic L1MA2|LINE|L1 -19604 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 526-37 chr11 35270888 35271168 + 3 NA intron (NM_001252652, intron 10 of 11) L2b|LINE|L2 108078 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 637-124 chrX 70189229 70189559 + 3 NA intron (NM_198512, intron 1 of 6) L1MD|LINE|L1 11911 NM_198512 347516 Hs.454355 NM_198512 ENSG00000184210 DGAT2L6 DC3 diacylglycerol O-acyltransferase 2 like 6 protein-coding 397-325 chr8 20338162 20338334 + 3 NA Intergenic L1MA8|LINE|L1 -34285 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 223-355 chr8 129485218 129485366 + 3 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -1150 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 587-162 chr8 66470193 66470491 + 3 NA Intergenic L1ME4a|LINE|L1 -23224 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 382-8 chr1 64050874 64051031 + 3 NA intron (NM_005012, intron 4 of 8) intron (NM_005012, intron 4 of 8) 61253 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 660-78 chr5 26634857 26635249 + 3 NA Intergenic Intergenic 403533 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 786-7 chr10 31792959 31793267 + 3 NA Intergenic L1ME3|LINE|L1 115813 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 1296-9 chr8 43581076 43581915 + 3 NA Intergenic ALR/Alpha|Satellite|centr 289053 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 569-88 chr2 13689477 13689780 + 3 NA Intergenic Intergenic -682615 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 831-33 chr3 102251472 102251987 + 3 NA Intergenic LTR78|LTR|ERV1 88024 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 1225-4 chr2 114868331 114868878 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -35056 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 536-22 chr1 217010635 217010848 + 3 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 66251 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 669-42 chr18 1504876 1505275 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -145446 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 346-272 chr2 210514553 210514758 + 3 NA intron (NM_001122633, intron 1 of 38) L1PA16|LINE|L1 -5063 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 456-53 chr11 118413027 118413251 + 3 NA intron (NR_046369, intron 3 of 3) MIRc|SINE|MIR 5676 NR_046369 100131626 Hs.721614 NR_046369 LOC100131626 - uncharacterized LOC100131626 ncRNA 762-8 chr10 43572865 43573303 + 3 NA intron (NM_001324353, intron 2 of 4) intron (NM_001324353, intron 2 of 4) 1532 NM_001324351 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 451-122 chr2 212670572 212670747 + 3 NA Intergenic Intergenic -124672 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 364-85 chr11 37120775 37120963 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -522590 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 464-264 chr8 137950734 137950975 + 3 NA intron (NR_161374, intron 2 of 7) L2b|LINE|L2 132691 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 551-28 chr11 21166301 21166693 + 3 NA intron (NM_201551, intron 13 of 18) L1MA3|LINE|L1 496911 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 609-147 chrX 43421334 43421788 + 3 NA Intergenic Intergenic -233346 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 478-252 chr6 67191235 67191431 + 3 NA Intergenic Intergenic -864018 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 619-130 chr8 131841161 131841531 + 3 NA Intergenic Intergenic -62747 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 332-247 chr2 58213003 58213180 + 3 NA intron (NR_156742, intron 1 of 9) intron (NR_156742, intron 1 of 9) 28289 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 237-196 chr2 157031988 157032073 + 3 NA Intergenic Intergenic -225675 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 578-192 chr9 30098258 30098660 + 3 NA Intergenic L1ME4a|LINE|L1 309995 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 308-251 chr2 172886742 172886943 + 3 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) 26804 NM_001282899 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 573-51 chr12 40574040 40574260 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -118289 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 424-186 chr4 34512917 34513168 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -243295 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 444-96 chr17 59527877 59528057 + 3 NA Intergenic Intergenic -1110 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 394-238 chr4 66212045 66212219 + 3 NA Intergenic Intergenic -64692 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 491-2 chr1 71705011 71705289 + 3 NA intron (NM_173808, intron 3 of 6) L1MEc|LINE|L1 131862 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 1058-12 chr18 78710424 78711063 + 3 NA Intergenic L2b|LINE|L2 -269532 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 724-42 chr2 223504963 223505484 + 3 NA Intergenic Intergenic 97138 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 340-55 chr10 78338989 78339219 + 3 NA Intergenic L2c|LINE|L2 71762 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 412-160 chr2 81647795 81648021 + 3 NA Intergenic MER4D1|LTR|ERV1 -180962 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 731-2 chr1 78760288 78760708 + 3 NA Intergenic Intergenic 110667 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 713-28 chr16 51689620 51689884 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -72767 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 338-453 chr5 149022682 149022908 + 3 NA intron (NM_024577, intron 12 of 16) L1MB7|LINE|L1 39614 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 567-80 chr2 6175146 6175445 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 193317 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 501-238 chr7 48781937 48782139 + 3 NA Intergenic L1MCa|LINE|L1 -142509 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 496-44 chr11 15787071 15787312 + 3 NA Intergenic Intergenic 143306 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 514-78 chr14 25285508 25285701 + 3 NA Intergenic HERVL-int|LTR|ERVL -235307 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 287-220 chr20 5379188 5379405 + 3 NA Intergenic Intergenic -62564 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 511-261 chr8 92360131 92360337 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -256849 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 785-29 chr2 239713711 239714171 + 3 NA Intergenic Intergenic -48919 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 417-103 chr16 76130858 76131048 + 3 NA Intergenic LTR33|LTR|ERVL -146448 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 438-296 chr9 88252091 88252353 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -113741 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 607-88 chr20 51300931 51301331 + 3 NA Intergenic Intergenic 151846 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 490-317 chr9 120277330 120277509 + 3 NA Intergenic L1ME4b|LINE|L1 -32369 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 837-34 chr5 36922319 36922713 + 3 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 45747 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 535-117 chr19 43963520 43963864 + 3 NA intron (NM_013359, intron 3 of 5) intron (NM_013359, intron 3 of 5) 12447 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 682-58 chr20 55294288 55294764 + 3 NA Intergenic (CAAT)n|Simple_repeat|Simple_repeat -128517 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 374-9 chr1 106842434 106842571 + 3 NA Intergenic Intergenic 24263 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 418-102 chr19 8012921 8013135 + 3 NA Intergenic AluJr|SINE|Alu -7387 NM_001419 1994 Hs.184492 NM_001419 ENSG00000066044 ELAVL1 ELAV1|HUR|Hua|MelG ELAV like RNA binding protein 1 protein-coding 644-44 chr2 173984866 173985344 + 3 NA Intergenic Intergenic -19403 NM_001172712 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 354-473 chr8 121680339 121680552 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -39005 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 1073-9 chr20 44243433 44244060 + 3 NA Intergenic L1MC5a|LINE|L1 -3353 NM_001256738 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 1008-20 chr8 29633543 29634188 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 114244 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 382-327 chr5 58679498 58679649 + 3 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 96498 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 503-103 chr14 101210167 101210389 + 3 NA Intergenic L1MB5|LINE|L1 89422 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 403-65 chr12 17889431 17889663 + 3 NA Intergenic Intergenic 200646 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 408-292 chr6 56061212 56061380 + 3 NA intron (NM_030820, intron 25 of 29) L2c|LINE|L2 30366 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 387-15 chr1 181340260 181340522 + 3 NA Intergenic L1ME4b|LINE|L1 104003 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 567-38 chr11 103459351 103459631 + 3 NA intron (NM_001377, intron 87 of 88) intron (NM_001377, intron 87 of 88) 350065 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 489-71 chr14 48194605 48194899 + 3 NA Intergenic Intergenic -399738 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 489-155 chr2 221893094 221893286 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -318988 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 831-17 chr18 7503880 7504336 + 3 NA Intergenic Intergenic -43102 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 298-10 chr1 85481429 85481592 + 3 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) -16351 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 629-114 chr6 152143832 152144148 + 3 NA intron (NM_182961, intron 137 of 145) intron (NM_182961, intron 137 of 145) 24297 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 560-153 chr6 109968688 109969018 + 3 NA Intergenic Intergenic -9403 NM_001286099 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 387-379 chr8 139075127 139075444 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -161244 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 397-169 chr2 144038773 144038976 + 3 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 101807 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 466-130 chr2 95224837 95225004 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -49529 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 258-142 chr15 56009778 56009913 + 3 NA Intergenic L1ME3|LINE|L1 -16233 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 184-8 chr1 78636664 78636786 + 3 NA intron (NM_006820, intron 5 of 8) HAL1b|LINE|L1 -13064 NR_135640 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 698-27 chr16 85966408 85966905 + 3 NA Intergenic Intergenic 48309 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 625-97 chr6 147937154 147937455 + 3 NA Intergenic Intergenic -335024 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 630-27 chr13 109062461 109062827 + 3 NA intron (NM_015011, intron 27 of 34) intron (NM_015011, intron 27 of 34) 104659 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 580-41 chr12 125819234 125819603 + 3 NA Intergenic L2a|LINE|L2 163956 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 533-197 chr6 58567979 58568207 + 3 NA Intergenic ALR/Alpha|Satellite|centr -606647 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 488-189 chr4 44438587 44438766 + 3 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 10133 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 452-135 chr2 123286999 123287279 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -213658 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 631-60 chr2 28177404 28177753 + 3 NA intron (NR_120504, intron 1 of 2) L1MA4A|LINE|L1 29383 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 556-36 chr11 54926551 54926836 + 3 NA Intergenic ALR/Alpha|Satellite|centr 219861 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 341-408 chr4 167662051 167662201 + 3 NA Intergenic Intergenic -427536 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 472-197 chr22 25540344 25540532 + 3 NA Intergenic (GTG)n|Simple_repeat|Simple_repeat -24237 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 456-117 chr16 2755411 2755663 + 3 NA intron (NM_016333, intron 1 of 14) intron (NM_016333, intron 1 of 14) 2899 NM_016333 23524 Hs.433343 NM_016333 ENSG00000167978 SRRM2 300-KD|CWF21|Cwc21|HSPC075|SRL300|SRm300 serine/arginine repetitive matrix 2 protein-coding 490-68 chr12 23378699 23378947 + 3 NA Intergenic L1PA17|LINE|L1 203187 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 461-91 chr16 3306624 3306840 + 3 NA intron (NM_001324041, intron 1 of 6) intron (NM_001324041, intron 1 of 6) 520 NM_001324041 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 254-442 chr9 84390181 84390281 + 3 NA Intergenic LTR82B|LTR|ERVL -21504 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 844-57 chr6 53209983 53210627 + 3 NA Intergenic Intergenic -61464 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 589-71 chr2 105245665 105246071 + 3 NA Intergenic Intergenic 4125 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 946-6 chr13 113576245 113576759 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -8186 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 385-37 chr10 91346968 91347218 + 3 NA intron (NR_024467, intron 4 of 4) LTR78B|LTR|ERV1 -62142 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 291-30 chr1 193650546 193650655 + 3 NA Intergenic L1MA3|LINE|L1 345855 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 418-70 chr14 56765893 56766053 + 3 NA Intergenic L1M5|LINE|L1 39694 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 311-226 chr19 24389658 24389852 + 3 NA Intergenic ALR/Alpha|Satellite|centr -226308 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 480-213 chr4 59878310 59878487 + 3 NA Intergenic Intergenic 864825 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 878-48 chr8 30358835 30359339 + 3 NA Intergenic Intergenic -25414 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 788-27 chr18 69718498 69718962 + 3 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 229143 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 416-218 chr3 34177653 34177889 + 3 NA Intergenic Intergenic 379141 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 314-481 chr5 152221234 152221393 + 3 NA intron (NR_109876, intron 1 of 2) L2b|LINE|L2 183966 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 533-100 chr2 69327032 69327226 + 3 NA intron (NM_002056, intron 17 of 18) intron (NM_002056, intron 17 of 18) 60098 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 854-45 chr9 132696622 132697175 + 3 NA Intergenic L1MEg|LINE|L1 26434 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 644-46 chr2 194373534 194373836 + 3 NA intron (NR_110222, intron 2 of 5) L1M6|LINE|L1 29416 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 181-7 chr1 164990433 164990528 + 3 NA Intergenic Intergenic -215839 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 521-238 chr7 69001031 69001288 + 3 NA Intergenic LTR8A|LTR|ERV1 596465 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 364-434 chr8 58360211 58360417 + 3 NA Intergenic L1MA6|LINE|L1 -50950 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 676-75 chr22 39795742 39796208 + 3 NA intron (NM_152512, intron 5 of 6) L1M2|LINE|L1 97785 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 437-193 chr4 68215059 68215288 + 3 NA intron (NR_104048, intron 1 of 9) intron (NR_104048, intron 1 of 9) 2907 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 545-55 chr12 23159571 23159909 + 3 NA Intergenic L1MB7|LINE|L1 -15896 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 528-123 chr2 18578686 18578919 + 3 NA intron (NM_001199104, intron 7 of 10) L1PA15|LINE|L1 10767 NM_033253 93034 Hs.744358 NM_033253 ENSG00000185013 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 374-114 chr15 67634716 67634954 + 3 NA intron (NM_001206804, intron 9 of 21) L1MEc|LINE|L1 85741 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 474-124 chr19 51861310 51861547 + 3 NA intron (NM_001370455, intron 5 of 6) AluSz|SINE|Alu 26508 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 790-13 chr13 53440936 53441373 + 3 NA Intergenic Intergenic -289254 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 175-158 chr8 21853379 21853445 + 3 NA Intergenic L1ME5|LINE|L1 60278 NM_003974 9046 Hs.71215 NM_003974 ENSG00000147443 DOK2 p56DOK|p56dok-2 docking protein 2 protein-coding 582-47 chr16 13695211 13695483 + 3 NA Intergenic Intergenic -224810 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 514-192 chr3 139489069 139489275 + 3 NA intron (NR_121609, intron 3 of 4) L1PB3|LINE|L1 -12656 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 708-9 chr10 62040252 62040706 + 3 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -8878 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 478-6 chr1 74727194 74727441 + 3 NA intron (NM_001889, intron 1 of 8) THE1B|LTR|ERVL-MaLR 5733 NM_001889 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 971-6 chr11 83370980 83371482 + 3 NA Intergenic L1MC3|LINE|L1 -84824 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 121-55 chr5 146751747 146751800 + 3 NA intron (NM_001271899, intron 2 of 9) L2a|LINE|L2 127012 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 287-167 chr18 4480676 4480850 + 3 NA Intergenic Intergenic -25456 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 435-155 chr3 106204080 106204265 + 3 NA Intergenic MLT2B1|LTR|ERVL -334771 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 520-266 chr6 157776804 157777079 + 3 NA Intergenic MIR|SINE|MIR -46305 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 607-73 chr2 52332685 52332946 + 3 NA intron (NR_135237, intron 8 of 10) AluSq|SINE|Alu -37833 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 567-94 chr2 221335849 221336107 + 3 NA Intergenic Intergenic 236326 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 262-390 chr7 10712010 10712114 + 3 NA intron (NR_147499, intron 1 of 2) MIRb|SINE|MIR 9386 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 897-14 chr15 95376606 95377237 + 3 NA Intergenic Intergenic -49821 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 539-58 chr12 127445453 127445739 + 3 NA Intergenic Intergenic -105524 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 450-112 chr17 50012739 50013060 + 3 NA Intergenic Intergenic -17675 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 757-59 chr7 121730309 121730750 + 3 NA Intergenic Intergenic -142632 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 382-91 chr13 74746632 74746877 + 3 NA Intergenic Intergenic 193911 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 1087 chr11 82496965 82497668 + 3 NA Intergenic Intergenic -93403 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 488-181 chr3 174659082 174659268 + 3 NA Intergenic Intergenic -200159 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 502-62 chr12 24075454 24075629 + 3 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -124509 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 365-310 chr5 13208172 13208352 + 3 NA Intergenic Intergenic -175376 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 533-4 chr1 60585794 60586201 + 3 NA intron (NR_146508, intron 4 of 7) intron (NR_146508, intron 4 of 7) 36688 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 647-93 chr7 49710274 49710676 + 3 NA Intergenic Intergenic -63163 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 325-302 chr20 12812002 12812139 + 3 NA Intergenic L1MA4A|LINE|L1 124893 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 387-367 chr8 104420294 104420524 + 3 NA intron (NM_001385, intron 7 of 9) intron (NM_001385, intron 7 of 9) 46646 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 499-166 chr3 61275245 61275444 + 3 NA Intergenic MIR|SINE|MIR -23883 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 747-37 chr2 183104299 183104788 + 3 NA Intergenic L1M1|LINE|L1 -12947 NM_001287584 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 761-41 chr3 19032252 19032778 + 3 NA Intergenic L1MA3|LINE|L1 -115995 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 520-72 chr12 132944893 132945191 + 3 NA intron (NM_001164715, intron 2 of 4) AluSz6|SINE|Alu 11264 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 398-6 chr1 65650504 65650718 + 3 NA Intergenic MER34|LTR|ERV1 124922 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 901-12 chr15 95785643 95786160 + 3 NA Intergenic Intergenic 341940 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 614-98 chr5 46077717 46078012 + 3 NA Intergenic ALR/Alpha|Satellite|centr -381484 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 800-38 chr3 34136340 34136770 + 3 NA Intergenic L1PB4|LINE|L1 337925 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 629-26 chr11 36022444 36022855 + 3 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 12551 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 616-73 chr2 12225545 12225822 + 3 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 26553 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 170-45 chr14 44618367 44618426 + 3 NA Intergenic Intergenic 110987 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 376-77 chr12 14701941 14702123 + 3 NA Intergenic Intergenic -5433 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 953-4 chr11 83488355 83489008 + 3 NA intron (NM_001142699, intron 21 of 27) intron (NM_001142699, intron 21 of 27) 193744 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 840-47 chr8 48278296 48278899 + 3 NA Intergenic Intergenic 270166 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 530-259 chr8 124853571 124853978 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity -31716 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 534-49 chr11 91181661 91182055 + 3 NA Intergenic L1PA13|LINE|L1 -312656 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 371-287 chr4 117112621 117112875 + 3 NA Intergenic Intergenic -27172 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 311-415 chr5 105703525 105703680 + 3 NA Intergenic L1MA7|LINE|L1 604128 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 808-15 chr14 79153972 79154308 + 3 NA intron (NR_073547, intron 14 of 20) MER91C|DNA|hAT-Tip100 -45842 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 278-418 chr8 99644566 99644669 + 3 NA intron (NM_017890, intron 34 of 61) intron (NM_017890, intron 34 of 61) -107756 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 276-488 chrX 65948124 65948293 + 3 NA Intergenic L1MB5|LINE|L1 -70662 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 390-343 chr6 170120004 170120190 + 3 NA Intergenic L1MEf|LINE|L1 -40545 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 360-435 chr7 67784292 67784531 + 3 NA Intergenic Intergenic -235842 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 637-9 chr1 165261687 165262000 + 3 NA intron (NM_177398, intron 3 of 8) L1MB3|LINE|L1 94398 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 776-15 chr14 68699401 68699849 + 3 NA Intergenic L1MD|LINE|L1 -70838 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 812-44 chr6 86618488 86619061 + 3 NA Intergenic L1MEf|LINE|L1 -318754 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 462-68 chr12 118849122 118849372 + 3 NA Intergenic Intergenic -15711 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 563-104 chr20 19024605 19024915 + 3 NA Intergenic Intergenic -187882 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 586-154 chr8 84766868 84767124 + 3 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 61069 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 577-212 chrY 56834113 56834434 + 3 NA Intergenic Intergenic -119982 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 364-271 chr3 30158254 30158438 + 3 NA Intergenic MER31B|LTR|ERV1 -224190 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 441-163 chr3 98314605 98314783 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 31806 NM_001005482 79310 Hs.554711 NM_001005482 ENSG00000197938 OR5H2 OR3-10 olfactory receptor family 5 subfamily H member 2 protein-coding 472-102 chr15 57093848 57094050 + 3 NA intron (NM_207038, intron 5 of 19) AluJr|SINE|Alu -125481 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 729-62 chr5 23033083 23033479 + 3 NA Intergenic Intergenic -179937 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 332-548 chr8 126904634 126904801 + 3 NA Intergenic Intergenic -108437 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 616-82 chr2 72212373 72212740 + 3 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -64694 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 500-179 chr3 36625007 36625263 + 3 NA Intergenic L1MC4|LINE|L1 114726 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 814-14 chr12 18324467 18324937 + 3 NA intron (NM_001288774, intron 7 of 32) intron (NM_001288774, intron 7 of 32) 63162 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 759-78 chr9 137704109 137704600 + 3 NA intron (NM_001354612, intron 1 of 8) intron (NM_001354612, intron 1 of 8) 84052 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 702-75 chr5 31675740 31676101 + 3 NA intron (NM_178140, intron 1 of 24) AluJb|SINE|Alu 36789 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 417-146 chr2 107322374 107322524 + 3 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 27076 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 618-28 chr12 111970344 111970765 + 3 NA intron (NM_001294314, intron 5 of 12) L1MEc|LINE|L1 42611 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 318-308 chr2 226299553 226299699 + 3 NA Intergenic L1MC3|LINE|L1 156832 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 869-40 chr4 166341830 166342213 + 3 NA Intergenic Intergenic 468784 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 430-52 chr11 50430615 50430859 + 3 NA Intergenic ALR/Alpha|Satellite|centr 21590 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 646-42 chr16 76255595 76255940 + 3 NA Intergenic Intergenic -21634 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 622-59 chr2 53352183 53352496 + 3 NA Intergenic L1MA5|LINE|L1 -415444 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 622-98 chr4 97936308 97936631 + 3 NA intron (NM_174952, intron 8 of 10) L1PA10|LINE|L1 207007 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 501-192 chr4 67826773 67826984 + 3 NA intron (NM_004262, intron 8 of 9) AluJr|SINE|Alu 57124 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 856-28 chr20 45605361 45605949 + 3 NA Intergenic L1MA9|LINE|L1 -24084 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 613-38 chr16 36065795 36066061 + 3 NA Intergenic ALR/Alpha|Satellite|centr 319376 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 528-115 chr18 78465920 78466168 + 3 NA Intergenic L1MA5|LINE|L1 -472317 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 453-20 chr1 238375038 238375388 + 3 NA Intergenic OldhAT1|DNA|hAT-Ac 110804 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 780-2 chr1 60194602 60194886 + 3 NA Intergenic L2c|LINE|L2 -120974 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 489-191 chr4 65098856 65099062 + 3 NA Intergenic Intergenic -94459 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 732-78 chr6 23118138 23118523 + 3 NA Intergenic Intergenic -400406 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 341-296 chr20 33878663 33878785 + 3 NA Intergenic Intergenic 67376 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 374-318 chr5 112973583 112973799 + 3 NA Intergenic Intergenic -3107 NR_038352 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 435-204 chr5 116554529 116554696 + 3 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -19806 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 864-46 chr8 30968028 30968550 + 3 NA Intergenic Intergenic -55281 NM_001350162 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 513-239 chr6 33900167 33900490 + 3 NA Intergenic L2c|LINE|L2 1193 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 410-135 chr2 53470519 53470729 + 3 NA Intergenic Intergenic -297159 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 803-61 chr8 138579303 138579702 + 3 NA Intergenic AluJo|SINE|Alu -81772 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 634-140 chr7 21597899 21598160 + 3 NA intron (NM_001277115, intron 14 of 81) intron (NM_001277115, intron 14 of 81) 54990 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 504-112 chr19 28146125 28146416 + 3 NA Intergenic Intergenic -352330 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 744-4 chr1 115208780 115209234 + 3 NA Intergenic HAL1|LINE|L1 -74027 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 475-268 chr7 112358912 112359117 + 3 NA Intergenic Intergenic -64130 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 501-120 chr2 185002680 185002919 + 3 NA Intergenic Intergenic 164273 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 590-17 chr10 64072331 64072604 + 3 NA Intergenic MIRb|SINE|MIR -550577 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 532-19 chr10 31174411 31174673 + 3 NA Intergenic L1MEc|LINE|L1 -13341 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 454-107 chr15 79674781 79674991 + 3 NA Intergenic L2c|LINE|L2 222111 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 880-6 chr11 69758968 69759439 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR 16138 NM_002007 2249 Hs.1755 NM_002007 ENSG00000075388 FGF4 FGF-4|HBGF-4|HST|HST-1|HSTF-1|HSTF1|K-FGF|KFGF fibroblast growth factor 4 protein-coding 497-118 chr2 41757195 41757447 + 3 NA Intergenic MER1A|DNA|hAT-Charlie -120234 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 534-144 chr21 19966694 19966920 + 3 NA Intergenic Intergenic -67052 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 390-306 chr5 144830421 144830622 + 3 NA Intergenic Intergenic 625130 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 312-61 chr10 116940194 116940401 + 3 NA intron (NM_001127211, intron 9 of 16) intron (NM_001127211, intron 9 of 16) 64890 NM_018330 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 467-57 chr11 121988914 121989070 + 3 NA Intergenic Intergenic 110852 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 511-89 chr16 80943029 80943285 + 3 NA Intergenic L1MEf|LINE|L1 -50561 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 465-265 chr6 168178682 168178905 + 3 NA Intergenic Intergenic 47724 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 708-47 chr3 48324688 48325206 + 3 NA intron (NM_001080525, intron 1 of 4) L1MB8|LINE|L1 3394 NM_001080525 646424 Hs.257687 NM_001080525 ENSG00000229453 SPINK8 - serine peptidase inhibitor, Kazal type 8 (putative) protein-coding 566-189 chr8 30043485 30043798 + 3 NA Intergenic Intergenic 39423 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 627-38 chr16 74187307 74187673 + 3 NA Intergenic Intergenic 28031 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 668-51 chr2 101545328 101545592 + 3 NA Intergenic L1M4a1|LINE|L1 -70348 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 540-177 chr5 105646292 105646627 + 3 NA Intergenic Intergenic 546985 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 613-97 chr4 59972341 59972582 + 3 NA Intergenic Intergenic -950158 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 475-97 chr16 47487288 47487554 + 3 NA intron (NM_001031835, intron 2 of 31) (TA)n|Simple_repeat|Simple_repeat 26090 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 513-15 chr1 209258356 209258686 + 3 NA Intergenic MIRb|SINE|MIR -66935 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 797-60 chr8 135959329 135959653 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 502035 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 561-32 chr11 13545649 13545887 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -49593 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 479-256 chr8 118574559 118574749 + 3 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -46347 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 451-147 chr3 89287698 89287887 + 3 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 180171 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 587-132 chr5 36313699 36313999 + 3 NA Intergenic L1MEg|LINE|L1 -11947 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 425-299 chr8 67347475 67347625 + 3 NA intron (NR_136223, intron 2 of 2) AluSx1|SINE|Alu 3716 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 185-43 chr12 14437553 14437631 + 3 NA intron (NM_181352, intron 4 of 14) intron (NM_181352, intron 4 of 14) 52311 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 341-524 chr8 83467947 83468143 + 3 NA Intergenic Intergenic 64287 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 605-81 chr3 177248542 177248926 + 3 NA Intergenic Intergenic -45708 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 923-21 chr5 130060040 130060416 + 3 NA intron (NM_175856, intron 2 of 2) L1PA17|LINE|L1 155763 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 553-217 chr7 62790719 62790999 + 3 NA Intergenic ALR/Alpha|Satellite|centr 513197 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 550-27 chr10 38812320 38812529 + 3 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 115828 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 556-123 chr2 240077402 240077705 + 3 NA Intergenic L1MEg|LINE|L1 -31481 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 595-164 chr8 113500037 113500425 + 3 NA Intergenic L1P3|LINE|L1 -63292 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 540-125 chr2 225036256 225036509 + 3 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 6086 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 399-245 chr5 45337996 45338211 + 3 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 358277 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 640-13 chr10 58544829 58545175 + 3 NA intron (NM_001080512, intron 1 of 20) MLT1B|LTR|ERVL-MaLR 32130 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 786-52 chr5 8232079 8232634 + 3 NA Intergenic Intergenic 225208 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 625-95 chr6 74553738 74553978 + 3 NA intron (NR_110856, intron 2 of 3) L1M1|LINE|L1 484407 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 412-266 chr5 134982821 134983009 + 3 NA intron (NM_178019, intron 2 of 7) L1PB3|LINE|L1 15008 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 972-11 chr2 216962244 216962754 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 91727 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 445-93 chr16 74285439 74285713 + 3 NA Intergenic Intergenic -11238 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 431-205 chr4 96089982 96090171 + 3 NA Intergenic L1MA4|LINE|L1 -220627 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 451-180 chr5 99995541 99995765 + 3 NA Intergenic Intergenic 392601 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 250-255 chr21 31242310 31242493 + 3 NA intron (NM_001353686, intron 6 of 27) AluJr|SINE|Alu -81461 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 634-73 chr2 67140847 67141244 + 3 NA intron (NR_038844, intron 6 of 7) L1MC4|LINE|L1 54599 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 460-205 chr3 118947160 118947373 + 3 NA non-coding (NR_046230, exon 4 of 4) non-coding (NR_046230, exon 4 of 4) 4190 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 342-394 chr5 44655273 44655438 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -145073 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 426-144 chr2 139875014 139875195 + 3 NA Intergenic Intergenic 711581 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 629-99 chr5 27356046 27356322 + 3 NA Intergenic Intergenic -116108 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 779-20 chr14 81239901 81240501 + 3 NA Intergenic L1MA5A|LINE|L1 -18811 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 379-144 chr2 5305951 5306134 + 3 NA Intergenic L1MD1|LINE|L1 385076 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 446-250 chr5 142521166 142521319 + 3 NA Intergenic Intergenic 100092 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 669-73 chr3 53447544 53447933 + 3 NA Intergenic HAL1|LINE|L1 -46873 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 621-57 chr2 66533627 66534058 + 3 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -40188 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 418-15 chr1 194672125 194672362 + 3 NA Intergenic Intergenic 1367498 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 515-194 chr4 175289922 175290214 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 371710 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 317-520 chr9 8066856 8066979 + 3 NA Intergenic L1M5|LINE|L1 -267139 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 815-9 chr10 54660133 54660591 + 3 NA intron (NM_001142771, intron 2 of 34) L1PA17|LINE|L1 -52405 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 308-484 chr8 51710059 51710262 + 3 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 99285 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 590-15 chr10 49035740 49036155 + 3 NA intron (NM_001031746, intron 7 of 7) intron (NM_001031746, intron 7 of 7) -50360 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 930-26 chr5 46125562 46126035 + 3 NA Intergenic ALR/Alpha|Satellite|centr -429418 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 590-99 chr3 8360839 8361140 + 3 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 140669 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 589-64 chr2 51345083 51345449 + 3 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 312665 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 318-523 chr7 104809356 104809483 + 3 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -5327 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 188-54 chr14 55949194 55949295 + 3 NA Intergenic L1ME4c|LINE|L1 -152570 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 515-154 chr3 12035935 12036134 + 3 NA intron (NM_133625, intron 1 of 12) LTR39|LTR|ERV1 31643 NM_133625 6854 Hs.445503 NM_003178 ENSG00000157152 SYN2 SYNII synapsin II protein-coding 355-392 chr5 25662477 25662616 + 3 NA Intergenic Intergenic 471593 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 483-232 chr6 156521668 156521883 + 3 NA Intergenic HAL1M8|LINE|L1 143025 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 479-68 chr14 84047422 84047627 + 3 NA Intergenic Intergenic -1224408 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 671-53 chr20 7804193 7804503 + 3 NA Intergenic L2b|LINE|L2 136110 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 543-27 chr10 26513322 26513577 + 3 NA intron (NM_019043, intron 7 of 14) intron (NM_019043, intron 7 of 14) 65858 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 309-213 chr18 21466491 21466647 + 3 NA intron (NM_001142966, intron 15 of 32) L1MB8|LINE|L1 134135 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 417-55 chr12 23228151 23228309 + 3 NA Intergenic Intergenic 52594 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 549-85 chr18 12720201 12720617 + 3 NA intron (NM_147163, intron 4 of 6) intron (NM_147163, intron 4 of 6) 17367 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 740-15 chr10 62334276 62334741 + 3 NA Intergenic Intergenic -39649 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 501-264 chr8 94644331 94644557 + 3 NA intron (NM_017697, intron 3 of 15) intron (NM_017697, intron 3 of 15) 3270 NM_001122826 54845 Hs.487471 NM_017697 ENSG00000104413 ESRP1 DFNB109|RBM35A|RMB35A epithelial splicing regulatory protein 1 protein-coding 485-35 chr10 93847325 93847527 + 3 NA Intergenic AluJo|SINE|Alu -46552 NM_001345993 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 737-36 chr18 14108801 14109191 + 3 NA intron (NM_145287, intron 2 of 2) AluSp|SINE|Alu 23439 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 311-327 chr22 47506208 47506372 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -19179 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 500-142 chr2 116558220 116558432 + 3 NA Intergenic Intergenic 1214511 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 491-24 chr10 111630856 111631025 + 3 NA Intergenic L2|LINE|L2 516649 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 399-179 chr20 16029492 16029753 + 3 NA intron (NM_001351663, intron 15 of 17) intron (NM_001351663, intron 15 of 17) -43740 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 1022-26 chr8 89029556 89030138 + 3 NA Intergenic L1PA16|LINE|L1 -702364 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 390-90 chr14 49462208 49462388 + 3 NA Intergenic Intergenic 124082 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 456-307 chr7 153103409 153103648 + 3 NA Intergenic MamRep434|DNA|TcMar-Tigger 308706 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 1143-12 chr4 136738293 136739091 + 3 NA Intergenic Intergenic -455064 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 561-21 chr10 43622039 43622325 + 3 NA Intergenic L1MD|LINE|L1 -6635 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 570-20 chr10 15626578 15626934 + 3 NA intron (NM_001291494, intron 12 of 28) MLT1B|LTR|ERVL-MaLR 93166 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 592-139 chr5 45820378 45820646 + 3 NA Intergenic HAL1|LINE|L1 -124132 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 546-165 chr4 31797770 31797976 + 3 NA Intergenic L1MA3|LINE|L1 -199506 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 524-103 chr19 42687241 42687462 + 3 NA Intergenic MER11A|LTR|ERVK 53130 NM_021016 5671 Hs.654413 NM_021016 ENSG00000221826 PSG3 - pregnancy specific beta-1-glycoprotein 3 protein-coding 522-199 chr5 14526222 14526550 + 3 NA Intergenic AluSx|SINE|Alu -55406 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 278-125 chr15 23536467 23536648 + 3 NA Intergenic MER21-int|LTR|ERVL 25574 NR_039731 100616275 NR_039731 ENSG00000265673 MIR4508 mir-4508 microRNA 4508 ncRNA 376-302 chr4 154387309 154387492 + 3 NA intron (NM_001358235, intron 1 of 19) L1ME4a|LINE|L1 104399 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 653-18 chr10 89854380 89854789 + 3 NA intron (NR_149080, intron 1 of 1) intron (NR_149080, intron 1 of 1) 678 NR_149080 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 472-21 chr1 172856396 172856660 + 3 NA Intergenic Intergenic 194435 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 572-28 chr11 81705979 81706282 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 184706 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 239-368 chr7 33743775 33743953 + 3 NA Intergenic Intergenic -161051 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 725-40 chr3 46767635 46768079 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -11002 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 514-258 chr7 7394595 7394899 + 3 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 139593 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 935-10 chr12 23334871 23335468 + 3 NA Intergenic Intergenic 159533 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 502-188 chr3 189610115 189610361 + 3 NA intron (NM_001329964, intron 1 of 13) L1PA14|LINE|L1 13492 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 308-359 chr4 128414019 128414210 + 3 NA Intergenic L1P4a|LINE|L1 -13902 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 538-70 chr14 68559055 68559369 + 3 NA intron (NM_001321818, intron 10 of 10) (AT)n|Simple_repeat|Simple_repeat 69575 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 492-192 chr4 89544833 89545121 + 3 NA Intergenic L1MA9|LINE|L1 -237177 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 487-213 chr4 69840217 69840434 + 3 NA TTS (NM_005420) TTS (NM_005420) 19820 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 328-146 chr14 48054214 48054390 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -259288 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 157-67 chr2 161809415 161809489 + 3 NA intron (NM_001354443, intron 4 of 25) L1PA16|LINE|L1 185036 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 296-372 chr5 62738670 62738866 + 3 NA Intergenic AluJr|SINE|Alu 159949 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 312-531 chr8 120655098 120655265 + 3 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -106072 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 291-421 chr7 83822503 83822633 + 3 NA Intergenic Intergenic -173429 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 610-78 chr19 39286424 39286658 + 3 NA Intergenic L1MB4|LINE|L1 -9866 NM_172140 282618 Hs.406745 NM_172140 ENSG00000182393 IFNL1 IL-29|IL29 interferon lambda 1 protein-coding 757-47 chr5 42236659 42237081 + 3 NA Intergenic Intergenic -61525 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 447-152 chr20 40827524 40827764 + 3 NA Intergenic Intergenic -113021 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 494-66 chr14 66254126 66254463 + 3 NA Intergenic Intergenic -232077 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 499-278 chr8 144565691 144565857 + 3 NA intron (NM_025251, intron 2 of 10) L1ME1|LINE|L1 -36663 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 511-210 chr5 117388548 117388819 + 3 NA Intergenic Intergenic -26829 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 388-163 chr2 86272606 86272811 + 3 NA intron (NM_001164731, intron 1 of 5) L2c|LINE|L2 64918 NM_022912 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 629-68 chr2 174173421 174173796 + 3 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 74924 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 434-53 chr11 110130275 110130464 + 3 NA intron (NM_033390, intron 1 of 5) intron (NM_033390, intron 1 of 5) 36977 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 496-192 chr4 58035788 58036066 + 3 NA Intergenic L1MC3|LINE|L1 500401 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 358-347 chr4 124402668 124402896 + 3 NA Intergenic Intergenic 155652 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 546-172 chr4 67303686 67303874 + 3 NA Intergenic Intergenic 118220 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 341-272 chr2 166088692 166088918 + 3 NA intron (NR_110260, intron 1 of 11) intron (NR_110260, intron 1 of 11) 7274 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 385-198 chr2 198136940 198137124 + 3 NA intron (NM_006226, intron 5 of 5) intron (NM_006226, intron 5 of 5) 238065 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 714-71 chr8 79122964 79123347 + 3 NA Intergenic HERVIP10B3-int|LTR|ERV1 -209033 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 823-31 chr7 67659620 67659989 + 3 NA Intergenic AluSz6|SINE|Alu 323828 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 516-240 chr7 110694727 110695062 + 3 NA intron (NM_001350963, intron 5 of 5) L1MB5|LINE|L1 -396112 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 463-127 chr19 43970912 43971081 + 3 NA Intergenic L1PA11|LINE|L1 -13174 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 540-55 chr12 70811406 70811692 + 3 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) -22629 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 1228-9 chr7 56686008 56686698 + 3 NA Intergenic Intergenic 126383 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 397-306 chr7 52323806 52323985 + 3 NA Intergenic LTR24C|LTR|ERV1 -711738 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 623-66 chr2 124484369 124484701 + 3 NA intron (NM_001367498, intron 7 of 23) MIRc|SINE|MIR 459248 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 499-201 chr5 31340664 31340946 + 3 NA Intergenic AluJb|SINE|Alu 147119 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 835-52 chr8 33024541 33024887 + 3 NA Intergenic L1MD1|LINE|L1 302879 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 495-229 chr7 8478002 8478300 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 44542 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 749-72 chr4 84521629 84522000 + 3 NA Intergenic Intergenic -23580 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 625-34 chr16 26313487 26313912 + 3 NA Intergenic L1MEg|LINE|L1 288462 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 308-278 chr22 24746274 24746459 + 3 NA intron (NM_001008496, intron 12 of 20) L1MA2|LINE|L1 -18135 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 982-16 chr20 23571056 23571715 + 3 NA Intergenic L1M1|LINE|L1 -2901 NM_080610 128821 Hs.121554 NM_080610 ENSG00000101435 CST9L CTES7B|bA218C14.1 cystatin 9 like protein-coding 898-26 chr5 11132259 11132651 + 3 NA intron (NM_001288715, intron 11 of 20) MLT1A0|LTR|ERVL-MaLR -371221 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 459-134 chr2 47122991 47123197 + 3 NA intron (NM_001163561, intron 5 of 6) AluSz|SINE|Alu 32214 NM_001163561 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 502-52 chr11 71226158 71226427 + 3 NA Intergenic L1MD1|LINE|L1 -1496 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 796-27 chr2 58457034 58457439 + 3 NA Intergenic MER63A|DNA|hAT-Blackjack -63517 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 568-54 chr14 70507893 70508155 + 3 NA Intergenic L1PA8|LINE|L1 -24268 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 269-13 chr1 83003130 83003244 + 3 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -16979 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 1323 chr10 13953593 13954286 + 3 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 17957 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 659-20 chr12 3703725 3704131 + 3 NA intron (NM_001144958, intron 3 of 19) L1ME1|LINE|L1 49181 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 546-215 chr7 8049899 8050144 + 3 NA intron (NM_138426, intron 3 of 7) intron (NM_138426, intron 3 of 7) 81225 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 419-290 chr8 81083560 81083843 + 3 NA intron (NM_018440, intron 1 of 8) L1MDa|LINE|L1 28367 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 265-86 chr13 26999991 27000111 + 3 NA Intergenic L1ME4a|LINE|L1 -125482 NR_046547 100874070 Hs.524923 NR_046547 USP12-AS1 - USP12 antisense RNA 1 ncRNA 494-231 chr5 83435905 83436202 + 3 NA Intergenic L2c|LINE|L2 -35621 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 862-27 chr5 130845170 130845736 + 3 NA Intergenic MIR|SINE|MIR 319803 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 490-88 chr14 65902776 65903085 + 3 NA Intergenic L1MC4a|LINE|L1 431828 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 418-24 chr10 22398058 22398295 + 3 NA intron (NM_172242, intron 8 of 9) L1M4|LINE|L1 39753 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 501-197 chr4 120588569 120588759 + 3 NA Intergenic Intergenic 334202 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 649-70 chr3 78793336 78793749 + 3 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 225917 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 210-59 chr12 34544208 34544357 + 3 NA Intergenic ALR/Alpha|Satellite|centr 521786 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 577-4 chr1 49490343 49490644 + 3 NA intron (NR_136623, intron 2 of 12) L1M5|LINE|L1 -18408 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 570-104 chr2 46424436 46424782 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 -4581 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 579-91 chr21 20203292 20203556 + 3 NA Intergenic L1PA8|LINE|L1 55261 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 591-83 chr2 206963878 206964198 + 3 NA intron (NM_173077, intron 7 of 8) intron (NM_173077, intron 7 of 8) 24520 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 458-63 chr13 102419624 102419815 + 3 NA Intergenic L1MEg|LINE|L1 -17276 NM_001321947 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 525-174 chr4 59334003 59334368 + 3 NA Intergenic Intergenic 320612 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 389-372 chr8 126065592 126065857 + 3 NA Intergenic Intergenic -114527 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 576-106 chr3 47129117 47129425 + 3 NA intron (NR_146158, intron 1 of 21) intron (NR_146158, intron 1 of 21) 34706 NM_014159 29072 Hs.517941 NM_012271 ENSG00000181555 SETD2 HBP231|HIF-1|HIP-1|HSPC069|HYPB|KMT3A|LLS|SET2|p231HBP SET domain containing 2, histone lysine methyltransferase protein-coding 962-23 chr8 89035520 89036056 + 3 NA Intergenic Intergenic -708305 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 948-6 chr10 129586763 129587382 + 3 NA intron (NM_002412, intron 2 of 4) L1ME1|LINE|L1 119831 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 663-80 chr4 179402997 179403485 + 3 NA Intergenic Intergenic -1495305 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 877-7 chr14 66804129 66804608 + 3 NA intron (NM_001024218, intron 3 of 21) intron (NM_001024218, intron 3 of 21) 296961 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 952-23 chr6 61518176 61518751 + 3 NA Intergenic ALR/Alpha|Satellite|centr -55667 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 466-80 chr14 81240549 81240825 + 3 NA Intergenic L1MA5A|LINE|L1 -19297 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 400-103 chr14 97569853 97570055 + 3 NA intron (NR_110166, intron 4 of 4) intron (NR_110166, intron 4 of 4) 111138 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 397-302 chr7 34373086 34373282 + 3 NA intron (NR_033665, intron 3 of 3) MLT1G1|LTR|ERVL-MaLR -285034 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 393-5 chr1 33573755 33573931 + 3 NA intron (NM_052896, intron 50 of 69) HAL1ME|LINE|L1 101198 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 691-48 chr3 16081808 16082208 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -92672 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 522-138 chr2 103180692 103180964 + 3 NA Intergenic Intergenic -196399 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 600-137 chr8 137423604 137423810 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity -10119 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 377-179 chr19 12508505 12508711 + 3 NA Intergenic L1M5|LINE|L1 -23792 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 280-166 chr18 1250475 1250636 + 3 NA Intergenic Intergenic 109074 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 538-176 chr4 71092494 71092852 + 3 NA Intergenic Intergenic -94586 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 936-33 chr8 26921948 26922395 + 3 NA Intergenic AluJb|SINE|Alu -54893 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 364-276 chr3 86660352 86660496 + 3 NA Intergenic L2a|LINE|L2 178481 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 253-16 chr1 113627824 113627988 + 3 NA intron (NM_001142782, intron 9 of 20) L1MA3|LINE|L1 131249 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 406-101 chr16 11773006 11773146 + 3 NA intron (NM_014153, intron 9 of 22) MER58B|DNA|hAT-Charlie 24182 NM_014153 29066 Hs.371856 NM_014153 ENSG00000122299 ZC3H7A HSPC055|ZC3H7|ZC3HDC7 zinc finger CCCH-type containing 7A protein-coding 307-441 chr6 164631810 164631912 + 3 NA Intergenic Intergenic 190202 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 468-97 chr16 11491003 11491289 + 3 NA intron (NM_001370704, intron 13 of 66) MIR|SINE|MIR 25886 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 616-53 chr16 8483071 8483407 + 3 NA Intergenic Intergenic 106599 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 518-62 chr11 115835795 115836203 + 3 NA Intergenic L2a|LINE|L2 -75799 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 399-97 chr14 80011948 80012111 + 3 NA Intergenic Intergenic -199390 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 936-3 chr1 171035045 171035550 + 3 NA intron (NM_001163629, intron 20 of 21) L1M5|LINE|L1 -55608 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 437-119 chr2 5294016 5294204 + 3 NA Intergenic MIR1_Amn|SINE|MIR 397008 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 818-65 chr9 106000966 106001455 + 3 NA Intergenic Intergenic 306669 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 507-157 chr3 16655929 16656115 + 3 NA Intergenic L2a|LINE|L2 -50599 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 187-45 chr13 90350954 90351049 + 3 NA Intergenic L2|LINE|L2 119819 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 723-71 chr7 70675974 70676494 + 3 NA intron (NM_015570, intron 5 of 18) AluJb|SINE|Alu -455910 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 515-146 chr21 18781290 18781539 + 3 NA Intergenic Intergenic -21602 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 803-20 chr19 21162926 21163252 + 3 NA intron (NR_138052, intron 3 of 6) MIRb|SINE|MIR 21049 NM_001319126 170959 Hs.156256 NM_133473 ENSG00000196705 ZNF431 - zinc finger protein 431 protein-coding 642-61 chr2 205451419 205451875 + 3 NA intron (NM_057177, intron 19 of 21) intron (NM_057177, intron 19 of 21) -230853 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 416-349 chr9 20059522 20059728 + 3 NA Intergenic L1MB7|LINE|L1 -272606 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 309-30 chr1 215374698 215374949 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -192481 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 519-111 chr2 122290259 122290450 + 3 NA Intergenic L1ME3E|LINE|L1 534703 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 389-305 chr5 158577924 158578058 + 3 NA Intergenic L1PB1|LINE|L1 -168218 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 1006-17 chr2 133794804 133795421 + 3 NA Intergenic L1MC3|LINE|L1 -226649 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 179-22 chr13 73774808 73774896 + 3 NA intron (NM_007249, intron 5 of 7) intron (NM_007249, intron 5 of 7) 210608 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 789-4 chr10 52828859 52829482 + 3 NA Intergenic L1MA4|LINE|L1 -57470 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 490-318 chr9 135047401 135047750 + 3 NA Intergenic Intergenic -27930 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 672-102 chr7 42660945 42661319 + 3 NA TTS (NR_110833) TTS (NR_110833) 45315 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 423-174 chr3 33931340 33931532 + 3 NA Intergenic Intergenic 132806 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 536-206 chr7 13657178 13657557 + 3 NA Intergenic Intergenic 329147 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 641-39 chr15 26626356 26626741 + 3 NA intron (NR_103801, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 2542 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 361-416 chr7 53947777 53948073 + 3 NA Intergenic Intergenic -135994 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 558-179 chr5 118250708 118251046 + 3 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -31697 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 390-195 chr2 118734696 118734867 + 3 NA Intergenic L1ME4c|LINE|L1 113402 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 820-45 chr5 18014223 18014755 + 3 NA Intergenic L1MEg2|LINE|L1 207215 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 481-100 chr15 59852157 59852436 + 3 NA Intergenic Intergenic -152015 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 546-152 chr3 102754247 102754553 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 319385 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 562-126 chr20 22927087 22927357 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger -108198 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 265-75 chr12 28290709 28290853 + 3 NA intron (NM_001352082, intron 4 of 13) intron (NM_001352082, intron 4 of 13) -100043 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 659-47 chr19 34758181 34758478 + 3 NA 3' UTR (NM_001007248, exon 4 of 4) 3' UTR (NM_001007248, exon 4 of 4) 14886 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 323-226 chr2 19000066 19000213 + 3 NA intron (NR_135287, intron 2 of 3) intron (NR_135287, intron 2 of 3) 26832 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 325-247 chr19 29001759 29001912 + 3 NA promoter-TSS (NR_040036) promoter-TSS (NR_040036) -720 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 488-124 chr2 9080223 9080418 + 3 NA Intergenic AluJb|SINE|Alu -76636 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 398-122 chr15 98070918 98071165 + 3 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 17712 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 1105-4 chr11 127699000 127699570 + 3 NA Intergenic L1MC3|LINE|L1 428215 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 1028-7 chr18 67703586 67704147 + 3 NA intron (NR_033921, intron 1 of 4) L1PA16|LINE|L1 110956 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 975-3 chr10 84070254 84070836 + 3 NA Intergenic L1MA4A|LINE|L1 -68964 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 468-61 chr12 66084002 66084209 + 3 NA Intergenic L1MEg|LINE|L1 46645 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 534-38 chr10 127610557 127610905 + 3 NA Intergenic L1MCa|LINE|L1 61382 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 1103-2 chr11 87233421 87233933 + 3 NA intron (NR_033149, intron 4 of 13) L2c|LINE|L2 195743 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 573-91 chr2 32565260 32565571 + 3 NA intron (NR_125793, intron 1 of 1) intron (NR_125793, intron 1 of 1) 9403 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 633-74 chr21 45189569 45189854 + 3 NA intron (NR_027674, intron 8 of 11) L1ME3Cz|LINE|L1 37181 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 649-29 chr15 65903200 65903478 + 3 NA intron (NM_032445, intron 21 of 22) intron (NM_032445, intron 21 of 22) 33848 NM_004663 8766 Hs.321541 NM_004663 ENSG00000103769 RAB11A YL8 RAB11A, member RAS oncogene family protein-coding 466-166 chr22 48573583 48573804 + 3 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) -2647 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 529-69 chr14 70120953 70121153 + 3 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -40836 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 367-399 chr6 104229745 104229947 + 3 NA Intergenic Intergenic 629700 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 677-9 chr10 23573092 23573428 + 3 NA Intergenic L1PA4|LINE|L1 -121467 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 438-3 chr1 34188348 34188605 + 3 NA intron (NM_001134734, intron 1 of 6) MIRb|SINE|MIR 11569 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 776-10 chr11 50554611 50555198 + 3 NA Intergenic ALR/Alpha|Satellite|centr 145757 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 367-292 chr3 112851072 112851285 + 3 NA Intergenic L1PREC2|LINE|L1 -5228 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 536-42 chr11 8139108 8139450 + 3 NA intron (NM_001206671, intron 2 of 5) intron (NM_001206671, intron 2 of 5) 29746 NM_001346694 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 1181 chr1 79555891 79556390 + 3 NA Intergenic Intergenic -549410 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 360-422 chr6 140659194 140659338 + 3 NA Intergenic Intergenic -24548 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 431-41 chr10 59402989 59403161 + 3 NA Intergenic L1MB7|LINE|L1 -39894 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 398-234 chr4 24027353 24027505 + 3 NA intron (NM_001330752, intron 2 of 13) MIR|SINE|MIR -137382 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 1008-16 chr5 30008875 30009560 + 3 NA Intergenic L1MEi|LINE|L1 128657 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 452-249 chr7 51805168 51805379 + 3 NA Intergenic Intergenic -412017 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 658-64 chr2 49658624 49659070 + 3 NA Intergenic Intergenic 315356 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 459-45 chr10 126774313 126774502 + 3 NA Intergenic Intergenic -103897 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 314-373 chr3 59610553 59610722 + 3 NA Intergenic MER3|DNA|hAT-Charlie 47860 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 401-340 chr9 8792075 8792246 + 3 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -58214 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 483-97 chr18 60926369 60926580 + 3 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -406956 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 320-400 chr4 112459733 112459892 + 3 NA Intergenic L1MCc|LINE|L1 -55567 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 280-398 chr8 31247135 31247303 + 3 NA Intergenic Intergenic -213863 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 478-180 chr3 33698685 33698966 + 3 NA intron (NM_001365634, intron 1 of 35) L1MCc|LINE|L1 19429 NM_001365629 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 740-69 chr7 8807175 8807605 + 3 NA Intergenic Intergenic 373781 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 1089-13 chr5 89090241 89090862 + 3 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -186446 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 486-42 chr11 25757586 25757823 + 3 NA Intergenic Intergenic -431419 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 548-22 chr10 19580041 19580391 + 3 NA intron (NM_001142308, intron 33 of 39) intron (NM_001142308, intron 33 of 39) 148334 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 585-82 chr2 190039259 190039571 + 3 NA Intergenic Intergenic 23314 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 300-319 chr4 55841255 55841361 + 3 NA Intergenic Intergenic -12340 NM_001024924 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 567-167 chr7 45310010 45310274 + 3 NA Intergenic L1M2|LINE|L1 152351 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 292-169 chr17 34905850 34905998 + 3 NA Intergenic MamRep1151|LTR?|LTR? 55536 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 586-53 chr14 80997449 80997688 + 3 NA intron (NM_001142626, intron 1 of 8) MIRc|SINE|MIR 41947 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 391-299 chr5 158657450 158657612 + 3 NA Intergenic L2c|LINE|L2 -247758 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 954-38 chr5 28948008 28948522 + 3 NA Intergenic L1ME1|LINE|L1 21395 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 398-94 chr14 27226912 27227095 + 3 NA Intergenic Intergenic 318361 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 323-357 chr4 10897074 10897250 + 3 NA Intergenic Intergenic -212394 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 643-56 chr2 132705813 132706137 + 3 NA intron (NM_207481, intron 17 of 17) (AT)n|Simple_repeat|Simple_repeat -34449 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 588-133 chr6 56353936 56354272 + 3 NA intron (NM_001318752, intron 1 of 28) L1ME3|LINE|L1 40024 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 207-160 chr20 31496060 31496161 + 3 NA Intergenic Intergenic 10332 NR_024358 140875 Hs.283478 NR_024358 ENSG00000233354 LINC00028 C20orf93|NCRNA00028|dJ1093G12.6 long intergenic non-protein coding RNA 28 ncRNA 471 chr1 4910602 4910873 + 3 NA Intergenic MER21C|LTR|ERVL 256128 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 723-26 chr18 1994224 1994568 + 3 NA Intergenic Intergenic 577109 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 451-172 chr5 11213870 11214169 + 3 NA intron (NM_001288715, intron 9 of 20) intron (NM_001288715, intron 9 of 20) 374898 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 1243-6 chr21 32052232 32052943 + 3 NA Intergenic L1ME3A|LINE|L1 33708 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 451-128 chr20 21057616 21057784 + 3 NA Intergenic Intergenic 48658 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 518-69 chr12 126674245 126674517 + 3 NA intron (NR_110034, intron 1 of 2) L1MA4A|LINE|L1 15937 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 740-3 chr1 69999607 70000003 + 3 NA intron (NM_001370785, intron 11 of 26) intron (NM_001370785, intron 11 of 26) 80483 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 531-51 chr12 133065207 133065423 + 3 NA Intergenic HERV16-int|LTR|ERVL -14888 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 757-11 chr12 72198726 72199152 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -73810 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 810-12 chr14 51889641 51890135 + 3 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 28683 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 393-224 chr3 121137569 121137785 + 3 NA intron (NR_145517, intron 7 of 8) L1MA8|LINE|L1 88037 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 387-288 chr5 94230351 94230546 + 3 NA intron (NM_001145678, intron 20 of 20) HAL1|LINE|L1 -118749 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 509-222 chr6 131826869 131827151 + 3 NA intron (NM_006208, intron 1 of 24) intron (NM_006208, intron 1 of 24) 18990 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 503-114 chr16 59945192 59945478 + 3 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 89982 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 577-149 chr5 44217713 44217967 + 3 NA Intergenic Intergenic -170892 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 562-22 chr10 54718215 54718664 + 3 NA intron (NM_001354404, intron 4 of 34) L1PA15-16|LINE|L1 82792 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 648-51 chr16 8383712 8384021 + 3 NA Intergenic MIR|SINE|MIR 205972 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 960-26 chr20 19359783 19360345 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -75468 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 555-18 chr10 63410881 63411139 + 3 NA intron (NM_001322258, intron 1 of 24) MLT1C|LTR|ERVL-MaLR -19565 NR_134312 105378330 Hs.602852 NR_134312 LOC105378330 - uncharacterized LOC105378330 ncRNA 550-22 chr10 18978639 18978960 + 3 NA Intergenic Intergenic -70002 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 338-126 chr12 52153840 52154035 + 3 NA Intergenic MIR3|SINE|MIR 38077 NM_182507 144501 Hs.140978 NM_182507 ENSG00000167767 KRT80 KB20 keratin 80 protein-coding 455-160 chr3 18664536 18664731 + 3 NA Intergenic Intergenic -219041 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 655-125 chr8 112322917 112323300 + 3 NA intron (NM_001363185, intron 41 of 66) intron (NM_001363185, intron 41 of 66) -320385 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 319-89 chr11 63098785 63098961 + 3 NA intron (NM_001136506, intron 5 of 9) L1MA3|LINE|L1 45348 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 360-63 chr11 40683975 40684135 + 3 NA intron (NM_020929, intron 1 of 4) L1MEd|LINE|L1 -390925 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 427-171 chr3 181199105 181199318 + 3 NA intron (NR_075091, intron 3 of 7) MSTA-int|LTR|ERVL-MaLR 24067 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 469-73 chr12 131001647 131001849 + 3 NA intron (NM_198827, intron 9 of 24) MLT1J2|LTR|ERVL-MaLR -7772 NR_131951 105755954 Hs.677534 NR_131950 ADGRD1-AS1 LACAT8 ADGRD1 antisense RNA 1 ncRNA 633-87 chr4 66011817 66012139 + 3 NA Intergenic L1PA8A|LINE|L1 -264846 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 350-234 chr2 107990378 107990581 + 3 NA intron (NM_021815, intron 2 of 8) intron (NM_021815, intron 2 of 8) 3955 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 385-219 chr20 63042133 63042294 + 3 NA intron (NR_033369, intron 1 of 5) L1MB4|LINE|L1 4202 NR_033369 100144597 Hs.636485 NR_033369 ENSG00000237119 LINC01056 - long intergenic non-protein coding RNA 1056 ncRNA 400-326 chr7 83587040 83587207 + 3 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 54308 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 484-117 chr2 24120964 24121173 + 3 NA intron (NM_199346, intron 3 of 4) intron (NM_199346, intron 3 of 4) 2266 NM_199346 375189 Hs.442718 NM_199346 ENSG00000176732 PFN4 - profilin family member 4 protein-coding 429-39 chr10 69706786 69707034 + 3 NA Intergenic L1MEc|LINE|L1 76663 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 666-28 chr14 44420124 44420591 + 3 NA Intergenic L1MA3|LINE|L1 86926 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 392-80 chr14 21028431 21028587 + 3 NA intron (NM_001282211, intron 1 of 14) AluJr|SINE|Alu -1708 NM_173846 122664 Hs.406966 NM_173846 ENSG00000179636 TPPP2 C14orf8|CT152|P18|p25beta tubulin polymerization promoting protein family member 2 protein-coding 808-28 chr2 149963346 149963809 + 3 NA Intergenic Intergenic -104386 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 528-248 chr8 77553216 77553500 + 3 NA Intergenic L1MA6|LINE|L1 102661 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 534-161 chr3 78967058 78967382 + 3 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 52239 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 710-99 chrX 45158671 45159063 + 3 NA intron (NM_176819, intron 2 of 4) MIRb|SINE|MIR 42009 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 531-126 chr2 199125931 199126284 + 3 NA Intergenic Intergenic 331832 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 185-40 chr11 112318483 112318589 + 3 NA intron (NR_126004, intron 2 of 3) MER89|LTR|ERV1 47787 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 913-13 chr16 12712174 12712522 + 3 NA intron (NM_018340, intron 2 of 3) intron (NM_018340, intron 2 of 3) -7973 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 392-272 chr6 39720028 39720190 + 3 NA intron (NM_001289020, intron 2 of 21) MER33|DNA|hAT-Charlie 5299 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 593-69 chr2 7727709 7728018 + 3 NA Intergenic (AG)n|Simple_repeat|Simple_repeat 171792 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 270-432 chr9 96771394 96771497 + 3 NA intron (NM_001314060, intron 2 of 4) L1ME3|LINE|L1 6642 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 233-403 chrX 43031617 43031732 + 3 NA Intergenic Intergenic -145320 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 476-163 chr20 60590786 60591049 + 3 NA Intergenic Intergenic 26355 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 203-243 chr9 26799869 26799959 + 3 NA Intergenic Intergenic 92888 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 893-2 chr1 104357814 104358335 + 3 NA Intergenic Intergenic 285051 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 450-184 chr22 48360485 48360680 + 3 NA Intergenic Intergenic 86218 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 609-125 chr7 23884379 23884614 + 3 NA Intergenic L1ME4b|LINE|L1 174277 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 592-164 chr7 123020530 123020798 + 3 NA Intergenic L1MB3|LINE|L1 -24964 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 983-9 chr20 41831610 41832206 + 3 NA Intergenic Intergenic -213531 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 289-327 chr3 195070728 195070824 + 3 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) -23812 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 776-51 chr7 16854983 16855346 + 3 NA Intergenic L1MA5A|LINE|L1 26819 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 430-268 chr6 117470135 117470315 + 3 NA Intergenic MER21-int|LTR|ERVL -12379 NM_173674 285761 Hs.658304 NM_173674 ENSG00000164465 DCBLD1 dJ94G16.1 discoidin, CUB and LCCL domain containing 1 protein-coding 497-79 chr14 78430925 78431128 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 27307 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 681-56 chr4 32712495 32712832 + 3 NA Intergenic MER49|LTR|ERV1 361625 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 649-86 chr5 61868834 61869134 + 3 NA Intergenic L1MC4|LINE|L1 -133286 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 432-116 chr2 12002258 12002586 + 3 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -4694 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 436-35 chr10 71114305 71114569 + 3 NA Intergenic L1MEc|LINE|L1 -98133 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 568-45 chr14 26647212 26647443 + 3 NA intron (NR_147061, intron 2 of 6) MIR3|SINE|MIR 48680 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 490-151 chr2 121782245 121782434 + 3 NA Intergenic L1PB1|LINE|L1 26688 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 242-193 chr2 107552640 107552801 + 3 NA intron (NR_146968, intron 2 of 2) intron (NR_146968, intron 2 of 2) 23301 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 510-89 chr15 75813566 75813793 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -29768 NM_173469 92912 Hs.23033 NM_173469 ENSG00000140367 UBE2Q2 - ubiquitin conjugating enzyme E2 Q2 protein-coding 525-220 chr6 51927400 51927583 + 3 NA intron (NM_138694, intron 37 of 66) LTR78B|LTR|ERV1 160122 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 750-78 chrX 41846808 41847342 + 3 NA intron (NM_003688, intron 2 of 26) L1MB7|LINE|L1 75959 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 558-216 chr8 101938922 101939263 + 3 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -45340 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 422-88 chr14 73975045 73975278 + 3 NA intron (NM_001249, intron 10 of 15) intron (NM_001249, intron 10 of 15) 24859 NM_182476 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 694-85 chr3 43419018 43419337 + 3 NA intron (NM_001204831, intron 11 of 12) MLT1F|LTR|ERVL-MaLR -67215 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 520-271 chr7 10018013 10018262 + 3 NA Intergenic Intergenic 383867 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 464-192 chr5 3690056 3690334 + 3 NA Intergenic L1ME3C|LINE|L1 94363 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 386-281 chr5 16390802 16390988 + 3 NA intron (NR_104625, intron 7 of 8) MamRep434|DNA|TcMar-Tigger 50207 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 836-2 chr1 91550846 91551225 + 3 NA Intergenic Intergenic 49927 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 497-97 chr18 451903 452210 + 3 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 48645 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 494-276 chr7 135131533 135131846 + 3 NA intron (NM_001345851, intron 10 of 10) L1MD1|LINE|L1 -16383 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 279-9 chr1 71551477 71551626 + 3 NA intron (NM_173808, intron 6 of 6) MIRc|SINE|MIR 285461 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 339-577 chr8 91212292 91212474 + 3 NA intron (NM_001282356, intron 1 of 19) intron (NM_001282356, intron 1 of 19) 2887 NM_001282357 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 355-478 chr7 110028217 110028424 + 3 NA Intergenic L1ME3D|LINE|L1 -68107 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 684-103 chr5 117377582 117377975 + 3 NA Intergenic Intergenic -37734 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 354-62 chr10 118094787 118094979 + 3 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -47942 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 515-115 chr2 80209924 80210186 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 94697 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 771-13 chr11 35273327 35273855 + 3 NA intron (NM_001252652, intron 10 of 11) intron (NM_001252652, intron 10 of 11) 110641 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 453-187 chr4 120732253 120732451 + 3 NA intron (NM_001300824, intron 12 of 13) intron (NM_001300824, intron 12 of 13) 190514 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 395-105 chr15 50267743 50267944 + 3 NA Intergenic L1MB8|LINE|L1 -2117 NM_001306146 3067 Hs.1481 NM_002112 ENSG00000140287 HDC - histidine decarboxylase protein-coding 656-84 chr4 78104359 78104767 + 3 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 46993 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 486-140 chr2 79148164 79148390 + 3 NA Intergenic L1MA9|LINE|L1 -9850 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 695-24 chr11 78371445 78371860 + 3 NA intron (NM_080491, intron 1 of 9) L2a|LINE|L2 -29772 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 979-13 chr4 56627778 56628192 + 3 NA Intergenic Intergenic 28537 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 881-21 chr2 4373742 4374228 + 3 NA Intergenic Intergenic 282237 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 1111-5 chr16 52005223 52005803 + 3 NA Intergenic FordPrefect|DNA|hAT-Tip100 68422 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 787-4 chr11 110754717 110755041 + 3 NA Intergenic L1M5|LINE|L1 -41690 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 419-227 chr5 30757211 30757495 + 3 NA Intergenic Intergenic -436333 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 540-167 chr5 6041331 6041644 + 3 NA Intergenic Intergenic 295805 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 558-64 chr15 78426931 78427150 + 3 NA Intergenic L1MA4|LINE|L1 -10391 NM_001354994 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA iron responsive element binding protein 2 protein-coding 206-9 chr1 98308749 98308826 + 3 NA Intergenic Intergenic 98076 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 579-112 chr4 46938898 46939204 + 3 NA intron (NM_001204267, intron 7 of 7) L2b|LINE|L2 -29806 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 570-45 chr11 87548297 87548583 + 3 NA Intergenic Intergenic 170971 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 564-183 chr7 34542330 34542641 + 3 NA intron (NR_033665, intron 2 of 3) L1MA7|LINE|L1 -115733 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 816-31 chr3 189548890 189549275 + 3 NA Intergenic Intergenic -47664 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 465-95 chr16 35488195 35488574 + 3 NA Intergenic L1MA9|LINE|L1 -7788 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 460-118 chr18 48966454 48966701 + 3 NA Intergenic MIR3|SINE|MIR -15866 NM_001190821 4092 Hs.465087 NM_005904 ENSG00000101665 SMAD7 CRCS3|MADH7|MADH8 SMAD family member 7 protein-coding 521-61 chr12 20994160 20994482 + 3 NA intron (NM_001371097, intron 13 of 15) L1MEh|LINE|L1 -21375 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 388-250 chr4 46624372 46624523 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -234319 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 427-140 chr21 20912574 20912919 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -85663 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 1338-4 chr19 51865867 51866626 + 3 NA TTS (NM_001370449) TTS (NM_001370449) 21690 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 460-183 chr21 32241506 32241767 + 3 NA Intergenic Intergenic 37413 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 400-309 chr6 86644120 86644349 + 3 NA Intergenic Intergenic -293294 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 606-62 chr17 60280536 60280957 + 3 NA intron (NM_032582, intron 5 of 33) intron (NM_032582, intron 5 of 33) -49101 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 529-236 chr9 99689494 99689721 + 3 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 130282 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 540-209 chr8 86535979 86536317 + 3 NA intron (NM_003909, intron 6 of 16) L1MC5|LINE|L1 21713 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 478-243 chr5 111265707 111266010 + 3 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 41474 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 432-259 chr6 169485402 169485564 + 3 NA intron (NR_146875, intron 19 of 20) L1PREC2|LINE|L1 216546 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 510-28 chr10 33560210 33560535 + 3 NA Intergenic Intergenic 212308 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 383-325 chr5 108617328 108617536 + 3 NA Intergenic Intergenic 110829 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 232-11 chr1 110439300 110439435 + 3 NA Intergenic L3|LINE|CR1 -11782 NM_032414 84432 Hs.514793 NM_032414 ENSG00000143125 PROK1 EGVEGF|PK1|PRK1 prokineticin 1 protein-coding 772-21 chr15 50098552 50098912 + 3 NA intron (NR_073597, intron 2 of 26) intron (NR_073597, intron 2 of 26) 14647 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 513-44 chr11 58823108 58823424 + 3 NA Intergenic L1P1|LINE|L1 21438 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 537-233 chr7 45519118 45519380 + 3 NA Intergenic L1MEf|LINE|L1 -54891 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 491-260 chr8 88432374 88432617 + 3 NA Intergenic L1M2|LINE|L1 -105012 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 625-17 chr10 115475001 115475374 + 3 NA intron (NM_207303, intron 24 of 28) intron (NM_207303, intron 24 of 28) 381822 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 486-92 chr14 87578490 87578773 + 3 NA Intergenic Intergenic 76663 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 555-218 chr9 103073692 103073936 + 3 NA Intergenic L1M3|LINE|L1 78481 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 442-166 chr21 14933049 14933334 + 3 NA Intergenic Intergenic -14523 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 388-253 chr4 70351287 70351502 + 3 NA Intergenic Intergenic -9366 NM_012390 26952 Hs.701334 NM_012390 ENSG00000109208 SMR3A P-B1|PBI|PRL5|PROL5 submaxillary gland androgen regulated protein 3A protein-coding 613-77 chr3 8518141 8518443 + 3 NA intron (NM_001278233, intron 1 of 4) intron (NM_001278233, intron 1 of 4) 16469 NM_001278235 29995 Hs.475353 NM_014583 ENSG00000071282 LMCD1 - LIM and cysteine rich domains 1 protein-coding 530-45 chr11 111967261 111967566 + 3 NA intron (NM_001278542, intron 3 of 5) L2a|LINE|L2 -9896 NM_033425 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 356-404 chr5 95992000 95992274 + 3 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 30136 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 344-276 chr20 31812775 31812951 + 3 NA Intergenic MIR|SINE|MIR -6512 NM_033118 85366 Hs.86092 NM_033118 ENSG00000101306 MYLK2 KMLC|MLCK|MLCK2|skMLCK myosin light chain kinase 2 protein-coding 433-137 chr2 118827251 118827401 + 3 NA Intergenic Intergenic 20857 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 411-130 chr18 56094903 56095156 + 3 NA intron (NR_040026, intron 5 of 8) L2|LINE|L2 42507 NR_040026 100505474 Hs.662191 NR_040025 ENSG00000267712 LINC01539 - long intergenic non-protein coding RNA 1539 ncRNA 891-5 chr11 94613139 94613698 + 3 NA intron (NM_152431, intron 15 of 19) L1MA9|LINE|L1 46050 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 768-22 chr16 17982746 17983312 + 3 NA Intergenic Intergenic 349633 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 632-82 chr4 41379105 41379413 + 3 NA intron (NM_001289122, intron 1 of 25) MLT1F1|LTR|ERVL-MaLR 18452 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 326-442 chr6 6578723 6578923 + 3 NA intron (NR_026970, intron 1 of 7) intron (NR_026970, intron 1 of 7) -9897 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 613-17 chr10 94669275 94669546 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -14319 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 578-14 chr1 215715323 215715716 + 3 NA intron (NM_206933, intron 61 of 71) intron (NM_206933, intron 61 of 71) 148215 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 539-151 chr3 182583364 182583696 + 3 NA Intergenic Intergenic -76406 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 461-278 chr8 127556719 127556913 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -74677 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 443-162 chr2 195764371 195764694 + 3 NA intron (NM_018897, intron 61 of 64) L1MA3|LINE|L1 107306 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 512-206 chr5 9891061 9891278 + 3 NA intron (NR_027112, intron 2 of 12) Charlie1a|DNA|hAT-Charlie 12655 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 628-5 chr1 43469934 43470351 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -16153 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 724-57 chr3 165470002 165470358 + 3 NA intron (NR_125764, intron 3 of 5) MIR|SINE|MIR 263220 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 284-334 chr5 144425738 144425837 + 3 NA intron (NM_001370487, intron 2 of 2) MSTD-int|LTR|ERVL-MaLR 220396 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 321-525 chr7 46659711 46659891 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 37321 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 843-15 chr12 103017999 103018350 + 3 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -59733 NM_001354304 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 467-171 chr3 12385484 12385708 + 3 NA intron (NM_001330615, intron 3 of 5) Tigger10|DNA|TcMar-Tigger 34094 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 363-386 chr6 12604177 12604458 + 3 NA Intergenic Intergenic -18913 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 385-200 chr2 206995237 206995408 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 55804 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 382-190 chr2 52721402 52721599 + 3 NA Intergenic L1MC4a|LINE|L1 -18885 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 524-86 chr16 84861842 84862126 + 3 NA intron (NM_031476, intron 6 of 14) intron (NM_031476, intron 6 of 14) 41999 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 500-68 chr12 68444391 68444564 + 3 NA intron (NR_120458, intron 1 of 3) L1MA5A|LINE|L1 7007 NR_120458 100507195 Hs.450772 NR_120458 ENSG00000251301 LINC02384 - long intergenic non-protein coding RNA 2384 ncRNA 527-19 chr1 239425733 239426053 + 3 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 39325 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 609-18 chr11 114589547 114589758 + 3 NA intron (NM_017678, intron 2 of 5) HUERS-P3-int|LTR|ERV1 6134 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 405-311 chr7 141309396 141309592 + 3 NA intron (NM_001195278, intron 2 of 3) L1ME4a|LINE|L1 235430 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 393-267 chr5 14576675 14576850 + 3 NA Intergenic MIR|SINE|MIR -5030 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 518-173 chr3 41568216 41568477 + 3 NA intron (NR_136342, intron 29 of 34) L2a|LINE|L2 368841 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 521-65 chr12 47603805 47604136 + 3 NA Intergenic MIRb|SINE|MIR 102060 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 1099-18 chr3 67732512 67733151 + 3 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 78134 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 299-242 chr2 198177831 198177931 + 3 NA Intergenic L1MA9|LINE|L1 197216 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 372-364 chr4 70383517 70383685 + 3 NA intron (NM_006685, intron 1 of 2) intron (NM_006685, intron 1 of 2) 470 NM_006685 10879 Hs.650650 NM_006685 ENSG00000171201 SMR3B P-B|PBII|PRL3|PROL3|SMR1B submaxillary gland androgen regulated protein 3B protein-coding 596-82 chr18 47906301 47906724 + 3 NA intron (NM_001003652, intron 1 of 10) L1ME2|LINE|L1 24147 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 625-37 chr17 54190734 54191036 + 3 NA Intergenic L1MD1|LINE|L1 367958 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 180-138 chr5 102227567 102227694 + 3 NA Intergenic L1M4a2|LINE|L1 68654 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 207-244 chr5 104404320 104404458 + 3 NA Intergenic Intergenic -695085 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 434-39 chr10 81859384 81859581 + 3 NA Intergenic L1MA9|LINE|L1 -15712 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 472-346 chr9 99192329 99192538 + 3 NA Intergenic Intergenic 29509 NR_024532 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2 alpha-1,3/1,6-mannosyltransferase protein-coding 1293-7 chr5 66484702 66485379 + 3 NA Intergenic L1M4|LINE|L1 26564 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 485-42 chr11 27148278 27148465 + 3 NA intron (NR_125767, intron 3 of 4) GA-rich|Low_complexity|Low_complexity 70397 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 870-39 chr8 131533188 131533635 + 3 NA Intergenic Intergenic -370682 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 316-310 chr2 237273657 237273865 + 3 NA Intergenic L1PREC2|LINE|L1 140403 NM_057166 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 218-235 chr4 30388092 30388230 + 3 NA Intergenic Intergenic -332208 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 463-244 chr5 158625543 158625829 + 3 NA Intergenic Intergenic -215913 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 479-97 chr2 9025456 9025637 + 3 NA Intergenic Intergenic -21862 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 539-131 chr2 197738064 197738431 + 3 NA intron (NM_033030, intron 10 of 10) FLAM_C|SINE|Alu 32878 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 699-36 chr16 2389466 2389961 + 3 NA intron (NR_003574, intron 8 of 16) AluSx|SINE|Alu -39734 NM_001323538 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 367-407 chr6 162658264 162658417 + 3 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -68792 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 900-36 chr6 140267639 140268208 + 3 NA Intergenic L1MEf|LINE|L1 62671 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 473-156 chr20 47993193 47993431 + 3 NA Intergenic MER61E|LTR|ERV1 -3195 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 422-234 chr5 24902806 24902981 + 3 NA Intergenic Intergenic -62310 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 571-181 chr8 135050192 135050547 + 3 NA Intergenic Intergenic -183762 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 866-31 chr4 61069391 61069831 + 3 NA Intergenic MamRTE1|LINE|RTE-BovB -74045 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 565-70 chr2 4369572 4369775 + 3 NA Intergenic Intergenic 286549 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 413-289 chr8 9390650 9390864 + 3 NA Intergenic MER21C|LTR|ERVL 65706 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 245-288 chr5 114942146 114942296 + 3 NA Intergenic Intergenic -168808 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 455-78 chr15 60722066 60722372 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 40650 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 430-2 chr1 30345503 30345689 + 3 NA Intergenic MER58B|DNA|hAT-Charlie -307984 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 546-11 chr1 196035207 196035429 + 3 NA Intergenic L1ME3A|LINE|L1 53397 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 451-250 chr9 12854682 12854878 + 3 NA Intergenic FLAM_A|SINE|Alu -40391 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 448-280 chr8 71063859 71064091 + 3 NA Intergenic Intergenic 292731 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 683-80 chr7 45332072 45332384 + 3 NA Intergenic L1M5|LINE|L1 174437 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 267-141 chr16 88377537 88377641 + 3 NA Intergenic Intergenic -49882 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 591-45 chr15 95462578 95462924 + 3 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 29658 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 442-68 chr13 103034932 103035112 + 3 NA Intergenic Intergenic 31395 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 397-130 chr19 8924738 8924950 + 3 NA intron (NM_024690, intron 8 of 83) (TTAT)n|Simple_repeat|Simple_repeat 56498 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 577-97 chr2 125859926 125860144 + 3 NA Intergenic MER34|LTR|ERV1 257950 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 381-325 chr5 179005253 179005427 + 3 NA Intergenic L1M4|LINE|L1 -10020 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 595-123 chr4 66445180 66445513 + 3 NA Intergenic Intergenic 168522 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 398-220 chr3 152738497 152738665 + 3 NA Intergenic Intergenic -96550 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 659-76 chr3 164870202 164870623 + 3 NA Intergenic Intergenic -38932 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 456-111 chr15 79263648 79263876 + 3 NA intron (NR_038997, intron 1 of 1) L1ME4b|LINE|L1 -18960 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 788-34 chr3 29195535 29196076 + 3 NA Intergenic MLT2B3|LTR|ERVL 85134 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 495-22 chr10 9903084 9903415 + 3 NA Intergenic Intergenic -155473 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 546-136 chr22 26388446 26388728 + 3 NA Intergenic LTR16C|LTR|ERVL -40673 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 803-40 chr5 3938826 3939274 + 3 NA Intergenic L1MC1|LINE|L1 343218 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 598-139 chr8 82312562 82312924 + 3 NA Intergenic Intergenic -470457 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 319-167 chr15 100743925 100744041 + 3 NA Intergenic L1MCa|LINE|L1 -105769 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 679-60 chr2 240270690 240271075 + 3 NA Intergenic L1ME2|LINE|L1 -130224 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 628-77 chr2 192395210 192395557 + 3 NA Intergenic L1M5|LINE|L1 -200450 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 511-169 chr3 51759218 51759480 + 3 NA Intergenic L1M4|LINE|L1 19888 NM_001143833 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 757-43 chr4 30699943 30700353 + 3 NA Intergenic Intergenic -20221 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 895-33 chr5 12191303 12191822 + 3 NA Intergenic L1MC4|LINE|L1 -287116 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 493-182 chr20 49872948 49873223 + 3 NA intron (NR_048540, intron 8 of 11) intron (NR_048540, intron 8 of 11) 9226 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 454-262 chr5 110179767 110179992 + 3 NA Intergenic Intergenic 296697 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 778-71 chr9 17218146 17218721 + 3 NA intron (NM_001365029, intron 2 of 25) intron (NM_001365029, intron 2 of 25) 83393 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 742-37 chr2 51321015 51321529 + 3 NA intron (NR_135237, intron 2 of 10) L3|LINE|CR1 288671 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 743-37 chr2 81792642 81793125 + 3 NA Intergenic Intergenic -325937 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 829-37 chr6 95107420 95107891 + 3 NA Intergenic Intergenic 469796 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 350-201 chr19 44337110 44337321 + 3 NA intron (NM_001348284, intron 1 of 2) L1MC5a|LINE|L1 19465 NM_001348285 7771 Hs.48589 NM_013380 ENSG00000062370 ZNF112 ZFP112|ZNF228 zinc finger protein 112 protein-coding 895-41 chr9 88045715 88046173 + 3 NA Intergenic MER4D|LTR|ERV1 31956 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 548-128 chr2 213338770 213339092 + 3 NA intron (NR_047660, intron 4 of 14) L1PA10|LINE|L1 54467 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 702-70 chr4 67567142 67567527 + 3 NA intron (NM_012108, intron 1 of 8) intron (NM_012108, intron 1 of 8) 8607 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 444-94 chr17 56253085 56253240 + 3 NA intron (NM_001370326, intron 3 of 20) L4_A_Mam|LINE|RTE-X 99687 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 601-118 chr5 13456469 13456698 + 3 NA Intergenic Intergenic -423697 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 375-208 chr2 56593016 56593170 + 3 NA Intergenic Intergenic -407323 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 510-265 chr7 95946987 95947228 + 3 NA intron (NM_004411, intron 6 of 16) MIRb|SINE|MIR 174601 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 948-20 chr2 15137288 15137666 + 3 NA Intergenic Intergenic 423857 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 452-197 chr4 122125269 122125448 + 3 NA Intergenic Intergenic -45245 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 781-4 chr10 29831939 29832421 + 3 NA Intergenic Intergenic -95244 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 850-27 chr20 43731749 43732180 + 3 NA Intergenic Intergenic -4962 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 373-217 chr2 167459844 167459998 + 3 NA Intergenic L1MB3|LINE|L1 272549 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 631-112 chr6 50208482 50208784 + 3 NA Intergenic L1MDa|LINE|L1 -158704 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 490-229 chr5 125700961 125701208 + 3 NA Intergenic Intergenic 207823 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 542-9 chr1 104202641 104202869 + 3 NA Intergenic L1MB7|LINE|L1 129732 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 734-15 chr11 80497546 80497943 + 3 NA Intergenic Intergenic 265059 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 644-79 chr5 147009637 147009946 + 3 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) 46346 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 528-21 chr1 209495603 209495905 + 3 NA Intergenic FLAM_C|SINE|Alu 63621 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 619-69 chr2 74735029 74735332 + 3 NA Intergenic Intergenic 80933 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 587-160 chr8 43584580 43584993 + 3 NA Intergenic ALR/Alpha|Satellite|centr 292344 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 460-2 chr1 67824793 67824982 + 3 NA intron (NM_018841, intron 1 of 3) intron (NM_018841, intron 1 of 3) -7401 NR_040077 100289178 Hs.677603 NR_040077 ENSG00000232284 GNG12-AS1 - GNG12, DIRAS3 and WLS antisense RNA 1 ncRNA 589-171 chrX 46974902 46975328 + 3 NA intron (NM_014735, intron 1 of 10) intron (NM_014735, intron 1 of 10) 62694 NM_014735 9767 Hs.371977 NM_014735 ENSG00000102221 JADE3 JADE-3|PHF16 jade family PHD finger 3 protein-coding 435-164 chr4 33126237 33126495 + 3 NA Intergenic Intergenic 775328 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 579-124 chr4 156986071 156986407 + 3 NA Intergenic L1ME1|LINE|L1 -14440 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 463-272 chr7 88041939 88042183 + 3 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 107810 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 645-93 chr5 14003189 14003560 + 3 NA Intergenic Intergenic -58894 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 505-93 chr14 87647597 87647886 + 3 NA intron (NR_146551, intron 1 of 2) intron (NR_146551, intron 1 of 2) 7553 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 521-190 chr5 37712508 37712884 + 3 NA intron (NM_001345998, intron 13 of 17) AluSx|SINE|Alu 122126 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 554-201 chr8 82231465 82231813 + 3 NA Intergenic L1MA4A|LINE|L1 -389353 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 393-6 chr1 43274141 43274308 + 3 NA TTS (NM_144626) TTS (NM_144626) 4241 NM_001320244 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 300-325 chr4 67006784 67006950 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 415133 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 865-11 chr12 13065001 13065446 + 3 NA intron (NM_020853, intron 5 of 12) L3|LINE|CR1 20842 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 413-176 chr21 28564875 28565023 + 3 NA Intergenic Intergenic 25631 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 742-8 chr1 221330962 221331564 + 3 NA non-coding (NR_024236, exon 2 of 2) non-coding (NR_024236, exon 2 of 2) 5033 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 1039-21 chr9 4199155 4199622 + 3 NA intron (NM_001042413, intron 2 of 10) L1PA16|LINE|L1 -47205 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 720-52 chr20 7510709 7511083 + 3 NA Intergenic Intergenic 139288 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 631-62 chr2 36468822 36469171 + 3 NA intron (NM_016441, intron 5 of 16) L4_B_Mam|LINE|RTE-X 113218 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 558-151 chr4 60877796 60878066 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -44688 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 608-149 chr7 77270586 77270987 + 3 NA intron (NM_020879, intron 9 of 18) intron (NM_020879, intron 9 of 18) -70967 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 540-230 chr9 115896384 115896801 + 3 NA intron (NR_024032, intron 2 of 2) L1MEh|LINE|L1 28615 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 709-53 chr3 58687946 58688418 + 3 NA Intergenic Intergenic -21408 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 242-149 chr18 76269237 76269394 + 3 NA Intergenic Intergenic 59805 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 629-49 chr16 83921385 83921673 + 3 NA 3' UTR (NM_012213, exon 5 of 5) 3' UTR (NM_012213, exon 5 of 5) 22414 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 994-7 chr18 65835466 65836005 + 3 NA intron (NM_001362438, intron 6 of 11) intron (NM_001362438, intron 6 of 11) 84723 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 561-176 chr6 112884335 112884538 + 3 NA Intergenic HAL1ME|LINE|L1 537106 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 332-245 chr2 49343595 49343762 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie -189151 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 347-468 chr7 46451712 46451985 + 3 NA Intergenic Intergenic 245274 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 594-138 chr7 38714072 38714379 + 3 NA Intergenic Intergenic -27136 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 813-22 chr2 133090655 133091149 + 3 NA intron (NM_207481, intron 6 of 17) MSTA|LTR|ERVL-MaLR -175293 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 481-98 chr15 54951859 54952159 + 3 NA Intergenic Intergenic -104738 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 326-190 chr16 73128418 73128563 + 3 NA intron (NM_207385, intron 3 of 3) MIR|SINE|MIR 15957 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 917-9 chr16 68568112 68568620 + 3 NA intron (NM_001305204, intron 4 of 4) L1ME3C|LINE|L1 29075 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 428-96 chr17 71983928 71984100 + 3 NA Intergenic Intergenic 41965 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 657-64 chr3 64603158 64603520 + 3 NA intron (NM_001318781, intron 24 of 38) intron (NM_001318781, intron 24 of 38) 41993 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 645-35 chr14 89052157 89052547 + 3 NA Intergenic AluSx|SINE|Alu 227701 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 1262-3 chr14 78801605 78802112 + 3 NA intron (NR_073547, intron 8 of 20) L2c|LINE|L2 -398124 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 438-30 chr10 47232295 47232549 + 3 NA Intergenic L1M7|LINE|L1 -67775 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 550-235 chr8 120133501 120133766 + 3 NA intron (NM_021110, intron 1 of 47) intron (NM_021110, intron 1 of 47) 8531 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 280-385 chr7 55176756 55176922 + 3 NA intron (NM_001346941, intron 13 of 21) (TA)n|Simple_repeat|Simple_repeat 12110 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 351-231 chr2 124057059 124057229 + 3 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 31857 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 512-72 chr13 93653059 93653260 + 3 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 205314 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 435-102 chr17 52505870 52506084 + 3 NA intron (NR_146898, intron 1 of 3) L2|LINE|L2 115455 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 349-97 chr11 37003023 37003198 + 3 NA Intergenic MER20|DNA|hAT-Charlie -404831 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 590 chr1 14667795 14668016 + 3 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 69188 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 550-207 chr6 169472320 169472665 + 3 NA intron (NR_146875, intron 19 of 20) MIR|SINE|MIR -218378 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 606-157 chr8 54790715 54790932 + 3 NA Intergenic L1M3b|LINE|L1 174727 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 1114-9 chr9 108284660 108285114 + 3 NA Intergenic Intergenic 571099 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 826-18 chr12 133210734 133211325 + 3 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 24807 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 322-26 chr1 152257296 152257445 + 3 NA Intergenic (GTATAT)n|Simple_repeat|Simple_repeat -33174 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 347-121 chr14 42604929 42605065 + 3 NA Intergenic L1PB4|LINE|L1 998141 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 389-337 chr7 19841548 19841774 + 3 NA Intergenic Intergenic -68044 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 527-122 chr2 35640918 35641172 + 3 NA Intergenic Intergenic 169640 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 598-146 chr8 128304933 128305279 + 3 NA Intergenic Intergenic 154990 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 372-217 chr2 31200663 31200845 + 3 NA intron (NM_001321270, intron 5 of 21) MER54B|LTR|ERVL 16761 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 476-40 chr10 126143040 126143279 + 3 NA intron (NM_001288974, intron 4 of 18) (TG)n|Simple_repeat|Simple_repeat -169886 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 702-96 chr7 95722051 95722549 + 3 NA Intergenic Intergenic -50206 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 598-10 chr1 191252108 191252331 + 3 NA Intergenic L1MA4|LINE|L1 -23721 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 864-44 chr7 55138479 55139126 + 3 NA intron (NM_001346900, intron 1 of 27) MSTD|LTR|ERVL-MaLR 28963 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 332-212 chr18 13458591 13458761 + 3 NA intron (NM_181482, intron 4 of 5) MLT1D|LTR|ERVL-MaLR -1271 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 438-22 chr1 197309813 197310008 + 3 NA intron (NM_001257965, intron 3 of 14) intron (NM_001257965, intron 3 of 14) 41658 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 425-200 chr4 38207898 38208145 + 3 NA Intergenic Intergenic 88067 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 776-31 chr21 16435933 16436264 + 3 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 15803 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 524-25 chr10 25266732 25266921 + 3 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -90550 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 615-24 chr12 3690744 3691004 + 3 NA intron (NM_001144958, intron 4 of 19) L1PA13|LINE|L1 62235 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 411-282 chr8 10310418 10310636 + 3 NA intron (NM_001199729, intron 5 of 6) intron (NM_001199729, intron 5 of 6) -164038 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 735-60 chr3 121323664 121324109 + 3 NA intron (NM_001348343, intron 21 of 27) intron (NM_001348343, intron 21 of 27) 222102 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 237-320 chr6 8525670 8525797 + 3 NA intron (NR_038980, intron 2 of 4) intron (NR_038980, intron 2 of 4) 90110 NR_038979 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 379-254 chr5 1928558 1928756 + 3 NA Intergenic Intergenic 41326 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 553-226 chr8 36342002 36342193 + 3 NA Intergenic Intergenic -442277 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 812-33 chr22 33787407 33787857 + 3 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 62646 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 571-109 chr3 106288771 106289018 + 3 NA Intergenic Intergenic -419493 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 989-24 chr8 137220281 137220865 + 3 NA Intergenic Intergenic 193015 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 450-55 chr11 109771812 109772055 + 3 NA Intergenic L1MA6|LINE|L1 -321459 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 351-41 chr10 52549009 52549250 + 3 NA Intergenic Intergenic -78596 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 722-70 chr7 46717357 46717869 + 3 NA Intergenic Intergenic -20491 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 888-25 chr20 32955492 32956032 + 3 NA intron (NM_001143967, intron 23 of 26) intron (NM_001143967, intron 23 of 26) 48671 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 518-277 chr7 62618392 62618689 + 3 NA Intergenic ALR/Alpha|Satellite|centr 685516 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 493-142 chr2 54999714 54999975 + 3 NA intron (NM_153828, intron 1 of 6) intron (NM_153828, intron 1 of 6) 10428 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 343-254 chr2 106807333 106807549 + 3 NA intron (NM_001322362, intron 5 of 5) intron (NM_001322362, intron 5 of 5) 78587 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 561-113 chr20 55911193 55911562 + 3 NA Intergenic Intergenic 94142 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 548-199 chr6 99960049 99960367 + 3 NA intron (NM_032503, intron 1 of 5) L1MB1|LINE|L1 -33830 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 270-4 chr1 24927075 24927252 + 3 NA intron (NM_001320672, intron 4 of 6) intron (NM_001320672, intron 4 of 6) 3113 NM_004350 864 Hs.170019 NM_004350 ENSG00000020633 RUNX3 AML2|CBFA3|PEBP2aC RUNX family transcription factor 3 protein-coding 517-128 chr2 59851655 59851957 + 3 NA Intergenic Intergenic 531230 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 861 chr1 81066886 81067452 + 3 NA Intergenic L1ME5|LINE|L1 -239023 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 777-67 chr8 79213022 79213320 + 3 NA Intergenic Intergenic -119017 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 323-117 chr12 85851240 85851442 + 3 NA Intergenic L1PA16|LINE|L1 -14932 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 493-186 chr21 26564756 26565075 + 3 NA intron (NR_135472, intron 2 of 4) intron (NR_135472, intron 2 of 4) 8371 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 777-12 chr11 50392772 50393154 + 3 NA Intergenic ALR/Alpha|Satellite|centr -16184 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 423-269 chr7 64870557 64870779 + 3 NA Intergenic Intergenic -32574 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 331-188 chr16 20020385 20020567 + 3 NA Intergenic Intergenic 53302 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 743-59 chr4 36525840 36526222 + 3 NA intron (NR_149124, intron 3 of 4) L1MA4|LINE|L1 -99603 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 743-70 chr5 137821222 137821723 + 3 NA Intergenic Intergenic 20279 NR_002713 4888 Hs.643466 NR_002713 ENSG00000226306 NPY6R NPY1RL|NPY6RP|PP2|Y2B neuropeptide Y receptor Y6 (pseudogene) pseudo 487-64 chr12 14605737 14606034 + 3 NA intron (NR_120465, intron 2 of 5) L1M2|LINE|L1 -38002 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 643-47 chr18 70226823 70227199 + 3 NA Intergenic Intergenic -21324 NM_173630 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 866-48 chr7 101030475 101030956 + 3 NA intron (NM_001040105, intron 1 of 12) AluJo|SINE|Alu 10634 NR_133665 140453 Hs.271819 NM_001004430 ENSG00000169876 MUC17 MUC-17|MUC-3|MUC3 mucin 17, cell surface associated protein-coding 1276-4 chr6 123671168 123672031 + 3 NA Intergenic Intergenic -34506 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 267-252 chr3 36286612 36286711 + 3 NA Intergenic L1ME3D|LINE|L1 -93826 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 953-32 chr9 28261075 28261639 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 457948 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 266-132 chr15 87613245 87613396 + 3 NA Intergenic L1MC5a|LINE|L1 36391 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 346-384 chr5 33402812 33402961 + 3 NA Intergenic Intergenic -37810 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 311-251 chr2 53315103 53315324 + 3 NA Intergenic Intergenic -452570 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 735-39 chr2 36628724 36629029 + 3 NA Intergenic LTR49-int|LTR|ERV1 -30708 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 635-115 chr8 126479626 126480022 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 78654 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 749-96 chr8 105390617 105391040 + 3 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 71285 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 378-275 chr3 26520923 26521165 + 3 NA Intergenic L1M1|LINE|L1 -101762 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 317-155 chr14 79464368 79464494 + 3 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 185051 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 511-152 chr20 55716002 55716326 + 3 NA Intergenic Intergenic -288967 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 334-281 chr2 129485434 129485548 + 3 NA Intergenic Intergenic -211600 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 711-27 chr18 10355712 10356001 + 3 NA Intergenic Intergenic 58514 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 348-116 chr12 81015964 81016118 + 3 NA Intergenic L1MA9|LINE|L1 -62038 NM_001330242 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 275-141 chr17 33697967 33698071 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -164259 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 439-126 chr2 36646830 36647021 + 3 NA Intergenic Intergenic -48757 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 453-139 chr20 9365521 9365807 + 3 NA intron (NM_000933, intron 6 of 35) intron (NM_000933, intron 6 of 35) 57864 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 521-101 chr17 34588096 34588333 + 3 NA intron (NM_001304438, intron 1 of 8) L2b|LINE|L2 7465 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 1055-12 chr3 180119295 180120137 + 3 NA Intergenic AluSz|SINE|Alu -82779 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 791-29 chr17 53608626 53609021 + 3 NA Intergenic L1MEd|LINE|L1 -214104 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 404-221 chr3 144869646 144869807 + 3 NA Intergenic Intergenic 896645 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 367-327 chr4 66096360 66096511 + 3 NA Intergenic Intergenic -180389 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 502-10 chr1 93955277 93955594 + 3 NA Intergenic L1MA4A|LINE|L1 -45837 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 502-291 chrX 137704467 137704683 + 3 NA Intergenic AluJr|SINE|Alu 138448 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 762-42 chr22 47826565 47826892 + 3 NA intron (NR_122046, intron 8 of 8) L1P3|LINE|L1 195054 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 445-168 chr3 6522476 6522728 + 3 NA Intergenic Intergenic 282847 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 806-27 chr18 47759427 47759746 + 3 NA Intergenic AluSx1|SINE|Alu 171073 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 516-244 chr8 19536671 19536995 + 3 NA intron (NM_001354497, intron 1 of 7) L1MD|LINE|L1 65712 NM_001354499 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 342-218 chr2 7330456 7330625 + 3 NA Intergenic AluJb|SINE|Alu -90721 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 389-299 chr5 133730929 133731150 + 3 NA Intergenic Intergenic -118498 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 578-25 chr10 31238948 31239287 + 3 NA intron (NR_134478, intron 1 of 2) L1MA5|LINE|L1 51234 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 353-309 chr22 49499193 49499379 + 3 NA intron (NR_110523, intron 1 of 4) AluSz6|SINE|Alu 44180 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 573-5 chr1 102959540 102959828 + 3 NA intron (NM_001854, intron 41 of 66) intron (NM_001854, intron 41 of 66) 148812 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 192-49 chr12 43757729 43757863 + 3 NA intron (NM_031292, intron 1 of 8) L2|LINE|L2 994 NM_031292 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 505-172 chr20 882706 882977 + 3 NA intron (NM_015985, intron 4 of 8) intron (NM_015985, intron 4 of 8) 33493 NM_015985 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 1107-5 chr16 35442100 35442641 + 3 NA Intergenic Intergenic 38226 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 836-22 chr15 27002890 27003296 + 3 NA intron (NM_001270873, intron 2 of 5) intron (NM_001270873, intron 2 of 5) 31912 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 396-390 chrX 141268020 141268220 + 3 NA Intergenic Intergenic -25603 NM_022661 64663 Hs.375036 NM_022661 ENSG00000198573 SPANXC CT11.3|CTp11|SPANX-C|SPANX-E|SPANXE SPANX family member C protein-coding 641-113 chr8 125135461 125135720 + 3 NA intron (NM_001349486, intron 3 of 7) L1MEc|LINE|L1 43730 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 669-98 chr6 120058771 120059331 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 43872 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 477-218 chr4 31870155 31870426 + 3 NA Intergenic Intergenic -127089 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 583-83 chr2 39478804 39479001 + 3 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 41486 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 405-316 chr8 54768371 54768540 + 3 NA Intergenic L2a|LINE|L2 152359 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 815-8 chr10 33617376 33617704 + 3 NA Intergenic UCON2|DNA?|DNA? 155140 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 885 chr1 197732622 197733050 + 3 NA intron (NR_125340, intron 2 of 19) intron (NR_125340, intron 2 of 19) 42644 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 556-102 chr2 79533164 79533421 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 10109 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 463-268 chr7 54275231 54275525 + 3 NA Intergenic L1M3b|LINE|L1 -55319 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 374-328 chr5 166589778 166589963 + 3 NA Intergenic Intergenic 336500 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 587-25 chr11 54823515 54823738 + 3 NA Intergenic ALR/Alpha|Satellite|centr 116794 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 212-289 chr6 163689860 163689970 + 3 NA Intergenic Intergenic -18431 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 467-253 chr6 155759659 155759933 + 3 NA Intergenic Intergenic -187001 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 292-451 chr8 137527106 137527233 + 3 NA Intergenic Intergenic -113581 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 369-187 chr2 24147440 24147593 + 3 NA intron (NM_001145710, intron 7 of 10) L1MCc|LINE|L1 24047 NM_001145710 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 566-45 chr13 107001345 107001641 + 3 NA Intergenic Intergenic 319470 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 320-256 chr2 53644147 53644285 + 3 NA Intergenic Intergenic -123567 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 584-143 chr5 130250007 130250352 + 3 NA Intergenic L1PA17|LINE|L1 345714 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 672-63 chr2 187266948 187267393 + 3 NA Intergenic Intergenic 181082 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 342-431 chr5 150365467 150365621 + 3 NA intron (NM_001008657, intron 3 of 17) intron (NM_001008657, intron 3 of 17) 7847 NM_001135245 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 534-126 chr2 126435365 126435641 + 3 NA Intergenic Intergenic -220432 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 509-49 chr11 112965593 112965865 + 3 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -2269 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 408-258 chr5 12461528 12461757 + 3 NA Intergenic Intergenic -113215 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 609-64 chr2 236541039 236541253 + 3 NA Intergenic Intergenic -28679 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 426-28 chr10 64082247 64082414 + 3 NA Intergenic Intergenic -560440 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 540-180 chr5 155496465 155496742 + 3 NA Intergenic Intergenic 482848 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 283-403 chr6 163007294 163007450 + 3 NA intron (NM_001080379, intron 2 of 4) L1MEc|LINE|L1 46789 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 394-196 chr2 209075251 209075445 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -348699 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 504-201 chr4 149413534 149413739 + 3 NA intron (NM_001363507, intron 13 of 13) intron (NM_001363507, intron 13 of 13) 259341 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 448-44 chr11 23102044 23102234 + 3 NA Intergenic Intergenic -241665 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 647-64 chr3 34457494 34457793 + 3 NA Intergenic L1M2|LINE|L1 659013 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 381-409 chr9 103446952 103447200 + 3 NA Intergenic Intergenic -122043 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 546-24 chr10 70038642 70038993 + 3 NA Intergenic Intergenic -14029 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 299-207 chr2 74616693 74616845 + 3 NA intron (NM_001321739, intron 2 of 10) Charlie2b|DNA|hAT-Charlie 31268 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 457-71 chr14 72471921 72472107 + 3 NA intron (NM_001370288, intron 8 of 16) intron (NM_001370288, intron 8 of 16) -44806 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 502-145 chr2 134203285 134203538 + 3 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) -50661 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 503-30 chr10 56924097 56924428 + 3 NA Intergenic L1MEc|LINE|L1 380297 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 511-17 chr10 6560195 6560455 + 3 NA intron (NM_001323265, intron 1 of 17) intron (NM_001323265, intron 1 of 17) 19951 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 194-166 chr5 60515372 60515440 + 3 NA intron (NR_024617, intron 1 of 3) L1M5|LINE|L1 -19120 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 536-104 chr18 75985566 75985971 + 3 NA Intergenic Intergenic -137230 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 293-361 chr6 13994332 13994430 + 3 NA Intergenic L1MCb|LINE|L1 69188 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 431-262 chr7 3480892 3481094 + 3 NA intron (NM_152744, intron 1 of 44) L1MEd|LINE|L1 179741 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 571-12 chr10 51492318 51492702 + 3 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 192937 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 532-146 chr21 17954099 17954444 + 3 NA intron (NM_001204177, intron 1 of 4) L1MEf|LINE|L1 36931 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 347-188 chr19 12580399 12580549 + 3 NA 3' UTR (NM_020714, exon 5 of 5) 3' UTR (NM_020714, exon 5 of 5) -28992 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 713-7 chr1 213542680 213543138 + 3 NA Intergenic Intergenic -381840 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 352-128 chr13 98805593 98805735 + 3 NA intron (NM_001366682, intron 49 of 53) L1MC5a|LINE|L1 -26420 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 523-53 chr11 77745972 77746221 + 3 NA intron (NM_016578, intron 3 of 15) intron (NM_016578, intron 3 of 15) 74738 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 140-81 chr9 2035490 2035549 + 3 NA intron (NM_001289397, intron 3 of 32) intron (NM_001289397, intron 3 of 32) 13574 NM_001289396 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 535-198 chr5 33653767 33654001 + 3 NA intron (NM_001324512, intron 7 of 21) L1MDa|LINE|L1 213108 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 514-221 chr5 46217084 46217271 + 3 NA Intergenic ALR/Alpha|Satellite|centr -520797 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 715-24 chr17 52213863 52214235 + 3 NA Intergenic L2b|LINE|L2 -54032 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 718-11 chr10 85253329 85253693 + 3 NA Intergenic Intergenic -54573 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 371-348 chr6 158966912 158967103 + 3 NA Intergenic L1M4|LINE|L1 33180 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 486-26 chr10 29112627 29112810 + 3 NA Intergenic Intergenic -176352 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 306-247 chr2 114703747 114703869 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 129740 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 710-61 chr3 38757570 38758064 + 3 NA intron (NM_006514, intron 7 of 26) MamRep605|LTR?|LTR? 36193 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 383-65 chr11 104118441 104118663 + 3 NA intron (NM_025208, intron 1 of 6) L1MC1|LINE|L1 45595 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 687-114 chr8 11877839 11878140 + 3 NA Intergenic Intergenic -9902 NM_147781 1508 Hs.520898 NM_001908 ENSG00000164733 CTSB APPS|CPSB|RECEUP cathepsin B protein-coding 764-30 chr16 51601543 51601966 + 3 NA Intergenic MER21C|LTR|ERVL -160765 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 652-83 chr4 21351052 21351444 + 3 NA intron (NM_147182, intron 2 of 8) THE1B|LTR|ERVL-MaLR -47342 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 736-65 chr4 77689064 77689451 + 3 NA Intergenic Charlie5|DNA|hAT-Charlie 129807 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 563-131 chr4 3717644 3717867 + 3 NA Intergenic HAL1|LINE|L1 -39900 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LINC02171 - long intergenic non-protein coding RNA 2171 ncRNA 501-147 chr21 31936264 31936545 + 3 NA intron (NM_014586, intron 2 of 10) intron (NM_014586, intron 2 of 10) 63384 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 483-8 chr1 79284214 79284431 + 3 NA Intergenic L1ME3D|LINE|L1 -277592 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 306-177 chr16 6326191 6326378 + 3 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 306581 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 397-166 chr2 116859079 116859342 + 3 NA Intergenic L1ME2|LINE|L1 -955481 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 668-33 chr15 26457159 26457485 + 3 NA Intergenic Intergenic 171768 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 444-98 chr18 1557200 1557451 + 3 NA Intergenic L1PA17|LINE|L1 -197696 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 529-120 chr2 195407968 195408266 + 3 NA Intergenic Intergenic -248841 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 461-286 chr9 27267105 27267321 + 3 NA intron (NR_026679, intron 10 of 16) intron (NR_026679, intron 10 of 16) 15580 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 652-118 chr8 132119440 132119837 + 3 NA Intergenic Intergenic -14373 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 605-28 chr14 81038080 81038369 + 3 NA intron (NM_001142626, intron 1 of 8) L1MA6|LINE|L1 82603 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 513-100 chr16 78646872 78647194 + 3 NA intron (NM_001291997, intron 7 of 7) MLT1K|LTR|ERVL-MaLR 547379 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 459-202 chr4 17110712 17110980 + 3 NA Intergenic L1ME1|LINE|L1 75211 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 795-28 chr19 30645495 30645929 + 3 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 273328 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 462-6 chr1 67256046 67256278 + 3 NA intron (NM_144701, intron 10 of 10) intron (NM_144701, intron 10 of 10) -51202 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 427-202 chr5 23121144 23121327 + 3 NA Intergenic Intergenic -267891 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 723-47 chr20 46655593 46656106 + 3 NA intron (NM_001193340, intron 2 of 12) intron (NM_001193340, intron 2 of 12) -4390 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 466-78 chr14 73389852 73390043 + 3 NA intron (NM_001005743, intron 2 of 12) intron (NM_001005743, intron 2 of 12) 68633 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 591-119 chr4 164560952 164561321 + 3 NA Intergenic L1PA17|LINE|L1 -177881 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 465-121 chr19 43860303 43860618 + 3 NA Intergenic L1MA5A|LINE|L1 19676 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 467-226 chr5 66762018 66762372 + 3 NA intron (NM_001290228, intron 2 of 4) intron (NM_001290228, intron 2 of 4) -66578 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 305-90 chr11 20497016 20497174 + 3 NA intron (NM_005788, intron 15 of 15) intron (NM_005788, intron 15 of 15) -102305 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 484-163 chr22 27930086 27930265 + 3 NA intron (NR_026963, intron 1 of 4) L1ME4b|LINE|L1 -9563 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 412-162 chr2 98749790 98749945 + 3 NA Intergenic Intergenic -18735 NM_012214 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 521-74 chr13 35742461 35742666 + 3 NA Intergenic MER34C_|LTR|ERV1 44836 NR_132115 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 478-102 chr15 98063455 98063731 + 3 NA Intergenic Intergenic 25160 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 252-136 chr16 3324795 3324914 + 3 NA Intergenic Tigger1a_Art|DNA|TcMar-Tigger 18642 NM_001324041 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 531-157 chr3 101375690 101375939 + 3 NA intron (NM_001282803, intron 3 of 20) L1MB4|LINE|L1 -55239 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 684-116 chr8 82662014 82662403 + 3 NA Intergenic L1PA16|LINE|L1 -249896 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 424-117 chr19 50287674 50287981 + 3 NA intron (NM_024729, intron 32 of 40) intron (NM_024729, intron 32 of 40) 41550 NM_004977 3748 Hs.467146 NM_004977 ENSG00000131398 KCNC3 KSHIIID|KV3.3|SCA13 potassium voltage-gated channel subfamily C member 3 protein-coding 880-2 chr1 176585386 176585837 + 3 NA intron (NM_021936, intron 2 of 4) L1MA5A|LINE|L1 122436 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 374-398 chr8 124951037 124951306 + 3 NA TTS (NR_027321) TTS (NR_027321) 9163 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 516-198 chr4 96449038 96449413 + 3 NA intron (NR_147149, intron 1 of 3) L1PA14|LINE|L1 138522 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 859-34 chr5 120383273 120383841 + 3 NA Intergenic Intergenic -80721 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 783-7 chr1 242621188 242621755 + 3 NA Intergenic Intergenic -96774 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 727-73 chr6 139886876 139887259 + 3 NA Intergenic Intergenic 32217 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 313-323 chr3 5544983 5545118 + 3 NA Intergenic L1MA8|LINE|L1 -294795 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 369-169 chr18 66071650 66071826 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR 320726 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 420-221 chr5 5718983 5719225 + 3 NA Intergenic Intergenic 296427 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 473-4 chr1 73930343 73930578 + 3 NA Intergenic Intergenic 255781 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 522-177 chr3 81135713 81136049 + 3 NA Intergenic Intergenic 142013 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 455-281 chr8 99282369 99282540 + 3 NA intron (NM_017890, intron 19 of 61) L3|LINE|CR1 254276 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 489-141 chr2 104556325 104556495 + 3 NA Intergenic Intergenic -45901 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 399-320 chr8 144574923 144575219 + 3 NA intron (NM_025251, intron 2 of 10) Tigger3b|DNA|TcMar-Tigger 30624 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 336-517 chr7 54336599 54336805 + 3 NA intron (NR_120516, intron 1 of 2) L1MCa|LINE|L1 6005 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 230-8 chr1 73464619 73464744 + 3 NA Intergenic Intergenic 158511 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 363-194 chr19 32138054 32138226 + 3 NA Intergenic Intergenic -32224 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 809-48 chr7 7447976 7448317 + 3 NA intron (NM_001037763, intron 18 of 34) L1MEc|LINE|L1 87727 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 704-54 chr3 166616793 166617123 + 3 NA Intergenic Intergenic -281725 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 654-17 chr10 60705661 60706163 + 3 NA intron (NM_001204403, intron 1 of 43) AluJb|SINE|Alu 27616 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 422-214 chr4 81133224 81133469 + 3 NA intron (NM_006259, intron 14 of 18) L1MEd|LINE|L1 20811 NM_001282482 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 230-219 chr21 33820372 33820528 + 3 NA intron (NM_001331008, intron 24 of 27) intron (NM_001331008, intron 24 of 27) 95354 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 461-273 chr8 118826779 118827162 + 3 NA Intergenic L1MEj|LINE|L1 124915 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 449-65 chr13 31226735 31226961 + 3 NA intron (NM_194318, intron 3 of 14) intron (NM_194318, intron 3 of 14) 26873 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 543-111 chr2 5599545 5599877 + 3 NA Intergenic Intergenic 91407 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 333-354 chr3 82698045 82698217 + 3 NA Intergenic L1MB8|LINE|L1 711989 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 508-146 chr3 46474833 46475115 + 3 NA intron (NM_001321122, intron 1 of 19) L1MDa|LINE|L1 -10069 NM_002343 4057 Hs.529517 NM_002343 ENSG00000012223 LTF GIG12|HEL110|HLF2|LF lactotransferrin protein-coding 503-272 chr7 118405417 118405728 + 3 NA Intergenic L1ME3|LINE|L1 180868 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 522-132 chr2 80498919 80499262 + 3 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 185711 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 530-42 chr11 70513884 70514267 + 3 NA intron (NM_133266, intron 2 of 10) L1MEf|LINE|L1 115546 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 1053-11 chr2 52497223 52497711 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 126819 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 441-237 chr7 4396328 4396531 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -261592 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 513-226 chr5 105580862 105581072 + 3 NA Intergenic Intergenic 481493 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 486-108 chr16 54555372 54555597 + 3 NA Intergenic L1ME2z|LINE|L1 -184785 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 584-6 chr1 54253553 54253911 + 3 NA intron (NM_018070, intron 6 of 16) intron (NM_018070, intron 6 of 16) 17289 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 913-12 chr15 101144369 101144923 + 3 NA Intergenic L2a|LINE|L2 107402 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 504-132 chr2 108028576 108028769 + 3 NA Intergenic Intergenic 24083 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 434-59 chr12 16346724 16346968 + 3 NA promoter-TSS (NM_001267598) promoter-TSS (NM_001267598) -296 NM_145792 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 693-115 chrX 89062808 89063244 + 3 NA Intergenic Intergenic 315801 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 490-8 chr1 67909996 67910197 + 3 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -76629 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 600-25 chr11 127398815 127399084 + 3 NA Intergenic Intergenic 127879 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 683-64 chr5 30206100 30206405 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 325692 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1072-20 chr9 26877377 26877829 + 3 NA intron (NM_001167575, intron 4 of 5) L1MEj|LINE|L1 15199 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 600-83 chr3 22045246 22045598 + 3 NA Intergenic Intergenic 88283 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 547-10 chr1 197067181 197067532 + 3 NA promoter-TSS (NM_001994) promoter-TSS (NM_001994) -89 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 448-174 chr4 30564856 30565060 + 3 NA Intergenic L1MA6|LINE|L1 -155411 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 338-570 chr8 138253963 138254152 + 3 NA intron (NM_015912, intron 5 of 19) intron (NM_015912, intron 5 of 19) -170512 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 578-50 chr12 99481529 99481848 + 3 NA intron (NM_152788, intron 10 of 25) L1PB3|LINE|L1 -166065 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 271-376 chr6 54519063 54519156 + 3 NA Intergenic Intergenic 210668 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 679-51 chr2 31688608 31689025 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 -107878 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 723-31 chr2 969421 969738 + 3 NA intron (NM_018968, intron 1 of 16) L1MEc|LINE|L1 -18187 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 537-133 chr2 181341525 181341786 + 3 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) -36003 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 709-14 chr11 81225083 81225472 + 3 NA Intergenic Intergenic -462474 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 747-32 chr2 119111748 119112249 + 3 NA Intergenic LTR10A|LTR|ERV1 46753 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 508-194 chr5 143387092 143387377 + 3 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 16049 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 483-203 chr5 30785250 30785414 + 3 NA Intergenic Intergenic -408354 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 530-153 chr20 61330122 61330553 + 3 NA intron (NM_001794, intron 2 of 15) L1PA10|LINE|L1 78076 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 343-442 chr5 106407556 106407736 + 3 NA Intergenic Intergenic 603368 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 368-160 chr15 60652507 60652698 + 3 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -25072 NM_134260 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 997-6 chr12 118848430 118848962 + 3 NA Intergenic LTR16A1|LTR|ERVL -15160 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 434-316 chr9 71414210 71414390 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 32671 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 461 chr1 12640633 12640865 + 3 NA Intergenic LTR10B2|LTR|ERV1 -3798 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 719-74 chr7 42116630 42116944 + 3 NA intron (NM_000168, intron 3 of 14) intron (NM_000168, intron 3 of 14) 120422 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 766-43 chr20 42368577 42369066 + 3 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -316662 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 552-7 chr1 94732230 94732555 + 3 NA non-coding (NR_160780, exon 2 of 6) non-coding (NR_160780, exon 2 of 6) 13508 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 579-63 chr19 57924197 57924429 + 3 NA intron (NM_001317028, intron 5 of 6) intron (NM_001317028, intron 5 of 6) -7721 NM_001297734 147687 Hs.567710 NM_152475 ENSG00000173480 ZNF417 - zinc finger protein 417 protein-coding 609-134 chr8 65290021 65290366 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -109853 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 467-192 chr3 178280402 178280630 + 3 NA Intergenic L1MB3|LINE|L1 -138685 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 906-24 chr4 144539018 144539388 + 3 NA Intergenic MIRc|SINE|MIR 106816 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 188-63 chr15 70977640 70977732 + 3 NA intron (NM_017691, intron 9 of 15) intron (NM_017691, intron 9 of 15) 85243 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 247-54 chr11 24413949 24414047 + 3 NA Intergenic Intergenic -83055 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 569-3 chr1 56027044 56027432 + 3 NA Intergenic Intergenic 82151 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 871-32 chr6 165926365 165926723 + 3 NA intron (NR_026861, intron 1 of 1) intron (NR_026861, intron 1 of 1) -61007 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 663-67 chr3 8710026 8710268 + 3 NA Intergenic MamTip2|DNA|hAT-Tip100 -23653 NM_033337 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|MPDT|RMD2|VIP-21|VIP21 caveolin 3 protein-coding 268-203 chr2 105821134 105821261 + 3 NA intron (NM_003581, intron 2 of 4) intron (NM_003581, intron 2 of 4) -30650 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 407-177 chr22 27152648 27152967 + 3 NA Intergenic Intergenic -34709 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 414-43 chr11 35507882 35508086 + 3 NA intron (NM_015430, intron 1 of 11) L1MA4|LINE|L1 17632 NM_015430 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 638-76 chr2 160580350 160580781 + 3 NA Intergenic Intergenic -86758 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 707-4 chr1 166845572 166845937 + 3 NA intron (NM_001314014, intron 2 of 3) intron (NM_001314014, intron 2 of 3) 6279 NM_001314014 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 1270-3 chr2 14831227 14831800 + 3 NA Intergenic Intergenic 198796 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 413-216 chr4 39437086 39437254 + 3 NA intron (NM_175737, intron 2 of 4) intron (NM_175737, intron 2 of 4) 21778 NM_000661 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 610-10 chr1 221027000 221027307 + 3 NA Intergenic MIRb|SINE|MIR -147013 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 545-48 chr11 99919520 99919775 + 3 NA intron (NM_001243270, intron 6 of 23) L1ME1|LINE|L1 363502 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 479-145 chr3 110325092 110325416 + 3 NA Intergenic Intergenic 722426 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 295-286 chr3 22403963 22404137 + 3 NA Intergenic Intergenic 446911 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 523-183 chr3 108332646 108332835 + 3 NA intron (NM_001370244, intron 2 of 9) intron (NM_001370244, intron 2 of 9) 20955 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 449-289 chr8 131628591 131628771 + 3 NA Intergenic L1MA9|LINE|L1 -275412 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 324-178 chr15 55126082 55126277 + 3 NA Intergenic Intergenic 69432 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 243-87 chr12 23615846 23615970 + 3 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -31322 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 640-66 chr2 172341851 172342155 + 3 NA Intergenic Intergenic -85333 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 698-6 chr1 59088669 59088966 + 3 NA TTS (NR_110626) TTS (NR_110626) 57990 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 709-45 chr2 170913860 170914183 + 3 NA Intergenic LTR26B|LTR|ERV1 -14456 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 640-115 chr6 64310393 64310846 + 3 NA intron (NM_001292009, intron 29 of 43) L1PA13|LINE|L1 503783 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 578-65 chr16 17967372 17967611 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 365171 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 484-165 chr3 21404929 21405115 + 3 NA promoter-TSS (NR_002311) promoter-TSS (NR_002311) -704 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 397-293 chr7 5455772 5455904 + 3 NA intron (NM_001363441, intron 4 of 4) ERV3-16A3_LTR|LTR|ERVL -26911 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 493-269 chr7 13062184 13062412 + 3 NA Intergenic Intergenic 374665 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 478-304 chr9 22998516 22998730 + 3 NA Intergenic Intergenic 352423 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 538-263 chrX 80163259 80163536 + 3 NA Intergenic L1MA4A|LINE|L1 140337 NM_001303475 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 521-132 chr2 188577411 188577618 + 3 NA intron (NM_016315, intron 9 of 11) intron (NM_016315, intron 9 of 11) 212609 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 396-273 chr5 23199590 23199823 + 3 NA Intergenic L1MC1|LINE|L1 -307903 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 764-28 chr15 100142443 100142823 + 3 NA intron (NM_139057, intron 10 of 21) MIR|SINE|MIR 199342 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 446-139 chr19 58109368 58109557 + 3 NA intron (NR_027135, intron 1 of 1) L1ME3A|LINE|L1 8964 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 539-216 chr9 74138947 74139199 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -232458 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 989-23 chr8 137215646 137216324 + 3 NA Intergenic L2a|LINE|L2 197603 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 723-9 chr1 187968791 187969149 + 3 NA Intergenic Intergenic 525342 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 477-245 chr6 95846296 95846600 + 3 NA Intergenic Intergenic -169526 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 1025-7 chr17 34689652 34690328 + 3 NA Intergenic L1ME2z|LINE|L1 109241 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 764-32 chr19 24373553 24374078 + 3 NA Intergenic ALR/Alpha|Satellite|centr -210368 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 681-12 chr11 116076381 116076830 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X -316405 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 520-272 chr7 11889224 11889451 + 3 NA Intergenic Intergenic -57139 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 808-16 chr15 39521180 39521667 + 3 NA Intergenic Intergenic -59656 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 417-140 chr2 81570479 81570684 + 3 NA Intergenic Intergenic -103635 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 324-398 chr4 83345714 83345878 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -10643 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 977-17 chr8 87059940 87060515 + 3 NA intron (NM_173538, intron 4 of 10) MLT1E1A|LTR|ERVL-MaLR 193812 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 501-104 chr2 67198404 67198721 + 3 NA intron (NR_038844, intron 3 of 7) MIRb|SINE|MIR -14846 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 288-81 chr12 29066135 29066357 + 3 NA Intergenic Intergenic -83032 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 656 chr1 14544107 14544502 + 3 NA Intergenic Intergenic -54381 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 273-402 chr6 142100514 142100631 + 3 NA intron (NM_001324308, intron 1 of 2) L1MC1|LINE|L1 -11773 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 552-134 chr3 26280963 26281300 + 3 NA Intergenic Intergenic -341675 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 584-174 chr8 115010305 115010680 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 657521 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 717-7 chr1 78707446 78707774 + 3 NA Intergenic L1MA9|LINE|L1 57779 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 335-308 chr21 15099297 15099500 + 3 NA Intergenic Intergenic -34398 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 611-77 chr2 79378146 79378386 + 3 NA Intergenic Intergenic 122578 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 1133-6 chr4 61100641 61101260 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -42706 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 433-164 chr22 35226862 35227086 + 3 NA intron (NR_126356, intron 1 of 5) LTR78|LTR|ERV1 4082 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 453-181 chr4 69457711 69457960 + 3 NA Intergenic Intergenic 38070 NM_001297615 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 434-326 chrX 100839405 100839660 + 3 NA intron (NM_001306206, intron 14 of 14) intron (NM_001306206, intron 14 of 14) 19169 NM_001306209 1478 Hs.132370 NM_001325 ENSG00000101811 CSTF2 CstF-64 cleavage stimulation factor subunit 2 protein-coding 322-452 chr6 47680916 47681085 + 3 NA intron (NM_001368115, intron 5 of 5) intron (NM_001368115, intron 5 of 5) -17580 NM_153838 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 430-121 chr18 26793213 26793380 + 3 NA Intergenic L1ME4a|LINE|L1 69614 NM_001364289 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 260-61 chr10 97279918 97280022 + 3 NA intron (NM_032900, intron 1 of 11) intron (NM_032900, intron 1 of 11) -9313 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 889-26 chr3 5864720 5865032 + 3 NA Intergenic Intergenic -614621 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 556-74 chr16 25874718 25874953 + 3 NA intron (NM_006040, intron 1 of 1) MIR|SINE|MIR -150402 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 280-106 chr13 38134016 38134151 + 3 NA intron (NR_047500, intron 1 of 5) L1PA15|LINE|L1 9149 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 559-79 chr18 41021901 41022237 + 3 NA Intergenic L1MD3|LINE|L1 498608 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 1327-5 chr2 150104367 150104944 + 3 NA Intergenic Intergenic 152352 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 474-298 chr8 128398444 128398627 + 3 NA Intergenic MIR|SINE|MIR 166144 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 495-8 chr1 166446557 166446841 + 3 NA Intergenic L1PA15|LINE|L1 43340 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 250-391 chr7 14753879 14754070 + 3 NA intron (NM_001350722, intron 3 of 25) intron (NM_001350722, intron 3 of 25) 87476 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 522-208 chr5 66375799 66376102 + 3 NA Intergenic Intergenic 135654 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 598-72 chr2 48343860 48344119 + 3 NA intron (NM_002158, intron 2 of 6) intron (NM_002158, intron 2 of 6) 29307 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 739-17 chr13 111890935 111891313 + 3 NA Intergenic L1M4a2|LINE|L1 -2254 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 509-9 chr1 104217895 104218147 + 3 NA Intergenic L1PA4|LINE|L1 144998 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 476-89 chr14 89004945 89005164 + 3 NA Intergenic L2a|LINE|L2 180403 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 746-61 chr5 46282136 46282569 + 3 NA Intergenic ALR/Alpha|Satellite|centr -585972 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 844-23 chr17 51477637 51478145 + 3 NA Intergenic Intergenic 42464 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 363-212 chr2 77808538 77808765 + 3 NA intron (NR_110288, intron 3 of 3) LTR9A1|LTR|ERV1 -107283 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 622-97 chr4 89447612 89448024 + 3 NA Intergenic Intergenic -140018 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 556-26 chr10 87851191 87851437 + 3 NA Intergenic Intergenic 12123 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53 regulated DNA replication inhibitor protein-coding 1288-4 chr5 16344366 16344958 + 3 NA Intergenic MER34C2|LTR|ERV1 96440 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 480-23 chr10 21461151 21461408 + 3 NA Intergenic Intergenic 35362 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 371-96 chr13 88573209 88573353 + 3 NA Intergenic L2a|LINE|L2 32452 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 690-30 chr13 61009502 61009894 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR 190182 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 855-49 chr8 77056453 77056813 + 3 NA Intergenic Intergenic -55589 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 774-29 chr16 8308150 8308536 + 3 NA Intergenic MIR|SINE|MIR 281495 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 877-28 chr5 125727406 125727878 + 3 NA Intergenic AluJb|SINE|Alu 234381 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 305-154 chr14 69551822 69551983 + 3 NA Intergenic Intergenic 22969 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 407-335 chr8 136862760 136862926 + 3 NA intron (NR_147196, intron 4 of 5) L1ME1|LINE|L1 332045 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 552-53 chr13 94497229 94497505 + 3 NA intron (NM_001322184, intron 1 of 8) MLT2D|LTR|ERVL -17685 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 488-226 chr5 149775633 149775934 + 3 NA intron (NM_001172699, intron 1 of 10) intron (NM_001172699, intron 1 of 10) 3843 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 568-175 chr6 138747854 138748085 + 3 NA intron (NR_161205, intron 2 of 2) intron (NR_161205, intron 2 of 2) -25551 NM_015439 25901 Hs.412019 NM_015439 ENSG00000024862 CCDC28A C6orf80|CCRL1AP coiled-coil domain containing 28A protein-coding 399-64 chr11 104353678 104353921 + 3 NA Intergenic L1M4b|LINE|L1 -189652 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 331-486 chr7 27992710 27992836 + 3 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -187684 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 490-310 chr9 26409154 26409362 + 3 NA Intergenic MER58B|DNA|hAT-Charlie 342583 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 641-35 chr14 53938502 53938754 + 3 NA Intergenic Intergenic 9856 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 577-113 chr22 48978663 48978936 + 3 NA Intergenic L1ME3C|LINE|L1 112029 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 249-200 chr2 81301777 81301938 + 3 NA Intergenic L1MC4|LINE|L1 165089 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 614-128 chr8 47674193 47674586 + 3 NA intron (NR_148204, intron 11 of 19) intron (NR_148204, intron 11 of 19) 14725 NM_001352960 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 359-474 chr8 83214230 83214474 + 3 NA Intergenic Intergenic -189406 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 520-84 chr14 47197379 47197598 + 3 NA intron (NM_001113498, intron 3 of 16) MLT1A0|LTR|ERVL-MaLR 145758 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 655-63 chr2 195110374 195110738 + 3 NA Intergenic L1M1|LINE|L1 379961 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 487-167 chr20 59763933 59764105 + 3 NA intron (NM_183246, intron 4 of 11) intron (NM_183246, intron 4 of 11) 42809 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 369-399 chr8 49287692 49287942 + 3 NA Intergenic L1M4c|LINE|L1 215473 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 213-6 chr1 79374230 79374339 + 3 NA Intergenic Intergenic -367554 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 588-138 chr6 109478892 109479171 + 3 NA intron (NM_014797, intron 2 of 6) HAL1|LINE|L1 4206 NM_001164313 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 709-91 chr8 90887931 90888335 + 3 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 96358 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 966-5 chr12 118702362 118702901 + 3 NA Intergenic Intergenic 59048 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 686-43 chr2 76687107 76687470 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -298677 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 448-63 chr12 64371380 64371529 + 3 NA intron (NM_001099676, intron 1 of 10) L1M4|LINE|L1 19304 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 467-230 chr5 95384970 95385265 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -6249 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 415-289 chr8 113138896 113139156 + 3 NA intron (NM_001363185, intron 4 of 66) L1MD1|LINE|L1 238126 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 735-61 chr3 193111376 193111781 + 3 NA Intergenic MER92-int|LTR|ERV1 -129644 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 1021 chr10 29170618 29171313 + 3 NA Intergenic AluY|SINE|Alu -118105 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 395-366 chr9 135632219 135632391 + 3 NA intron (NM_182974, intron 2 of 4) AluJr|SINE|Alu 7235 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 389-339 chr7 25280612 25280844 + 3 NA Intergenic Intergenic -52242 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 671-45 chr2 102323997 102324468 + 3 NA intron (NM_001282408, intron 1 of 6) L1ME2|LINE|L1 12669 NM_016232 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 473-194 chr4 58198004 58198264 + 3 NA Intergenic HAL1ME|LINE|L1 338194 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 475-283 chr8 92117540 92117746 + 3 NA Intergenic Intergenic -14258 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 217-270 chr4 103192665 103192820 + 3 NA intron (NM_001813, intron 8 of 48) L2|LINE|L2 5601 NM_001813 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 476-97 chr15 87099832 87100005 + 3 NA Intergenic L1MCa|LINE|L1 -111492 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 473-41 chr10 121714885 121715063 + 3 NA Intergenic L1MC5|LINE|L1 -116516 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 671-76 chr5 13938262 13938659 + 3 NA intron (NM_001369, intron 1 of 78) MER44D|DNA|TcMar-Tigger 6020 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 532-198 chr5 4030908 4031278 + 3 NA Intergenic Intergenic 435261 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 701-40 chr2 28486971 28487333 + 3 NA Intergenic L2b|LINE|L2 -8908 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 637-99 chr6 16361194 16361562 + 3 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 122791 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 521-93 chr15 71084502 71084755 + 3 NA Intergenic AluJr|SINE|Alu -56821 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 592-81 chr2 63631177 63631557 + 3 NA Intergenic L1MDa|LINE|L1 42216 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 328-517 chr6 153859770 153859919 + 3 NA Intergenic Intergenic -150652 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 958-5 chr1 195151619 195152105 + 3 NA Intergenic Intergenic 936853 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 765 chr1 96125892 96126347 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 134051 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 485-89 chr15 57020644 57020954 + 3 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 101354 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 248-325 chr5 112931986 112932131 + 3 NA Intergenic Intergenic -9831 NM_005669 7905 Hs.429608 NM_005669 ENSG00000129625 REEP5 C5orf18|D5S346|DP1|TB2|YOP1|Yip2e receptor accessory protein 5 protein-coding 679-105 chr8 26882017 26882425 + 3 NA Intergenic Intergenic -14943 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 375-175 chr18 7140187 7140347 + 3 NA Intergenic L1ME1|LINE|L1 -22470 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 502-251 chr8 4030175 4030446 + 3 NA intron (NM_033225, intron 4 of 69) THE1B-int|LTR|ERVL-MaLR 964604 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 331-393 chr4 126560639 126560829 + 3 NA Intergenic L1MEh|LINE|L1 1053475 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 535-160 chr22 47312361 47312808 + 3 NA Intergenic L1ME1|LINE|L1 -32987 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 609-43 chr17 73944918 73945324 + 3 NA Intergenic Intergenic -116584 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 519-166 chr4 150421281 150421575 + 3 NA intron (NM_001367550, intron 46 of 56) intron (NM_001367550, intron 46 of 56) -157661 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 468-178 chr20 59097392 59097622 + 3 NA Intergenic Intergenic -54661 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 427-263 chr8 117231817 117231979 + 3 NA Intergenic Intergenic 96903 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 511-39 chr12 2129372 2129624 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 76213 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 340-182 chr16 6057098 6057264 + 3 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 37478 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 1321-7 chr4 8714170 8714980 + 3 NA Intergenic L1MEc|LINE|L1 121810 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 401-331 chr8 129435359 129435574 + 3 NA intron (NR_130920, intron 1 of 3) MLT1D-int|LTR|ERVL-MaLR 48676 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 587-27 chr11 69610201 69610502 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -30754 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 1089-6 chr2 103115112 103115679 + 3 NA Intergenic X7A_LINE|LINE|CR1 -130966 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 400-122 chr16 82775026 82775226 + 3 NA intron (NR_110938, intron 1 of 2) MIR|SINE|MIR 1807 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 662-21 chr14 24742490 24742768 + 3 NA Intergenic MER4B|LTR|ERV1 -108439 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 248-233 chr22 28931768 28931911 + 3 NA intron (NM_032173, intron 1 of 8) MamRTE1|LINE|RTE-BovB 14450 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 558-158 chr4 88885533 88885872 + 3 NA intron (NM_014883, intron 6 of 23) L1PB1|LINE|L1 -62341 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 388-146 chr2 6141110 6141289 + 3 NA Intergenic Intergenic 159221 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 541-86 chr17 19616678 19617074 + 3 NA Intergenic AluJr|SINE|Alu -31274 NM_001369137 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 457-36 chr11 42591092 42591370 + 3 NA Intergenic Intergenic -337541 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 620-151 chr8 142846393 142846663 + 3 NA exon (NM_002066, exon 4 of 4) exon (NM_002066, exon 4 of 4) 11727 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 701-96 chr8 83453162 83453619 + 3 NA Intergenic Intergenic 49632 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 702-27 chr15 83047779 83048158 + 3 NA intron (NM_001011885, intron 3 of 6) L2a|LINE|L2 19284 NM_025238 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 763-55 chr6 51765006 51765395 + 3 NA intron (NM_138694, intron 55 of 66) L2a|LINE|L2 143330 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 431-110 chr18 75055967 75056198 + 3 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 149431 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 547-108 chr2 127613402 127613783 + 3 NA intron (NM_001080527, intron 25 of 46) L1MEb|LINE|L1 -32272 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 291-441 chr8 67660649 67660813 + 3 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 85629 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 538-206 chr5 148086599 148086921 + 3 NA intron (NM_006846, intron 5 of 32) MIRc|SINE|MIR 22780 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 1167-3 chr11 60011517 60012208 + 3 NA Intergenic L1M5|LINE|L1 -11941 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 453-128 chr2 145190087 145190293 + 3 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 522223 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 744-10 chr10 105569754 105570083 + 3 NA Intergenic L1M1|LINE|L1 250415 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 601-105 chr4 42971979 42972353 + 3 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 78900 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 592-53 chr14 84974704 84974997 + 3 NA Intergenic (TGTT)n|Simple_repeat|Simple_repeat -297082 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 587-79 chr2 142961716 142962090 + 3 NA intron (NM_001199241, intron 9 of 14) intron (NM_001199241, intron 9 of 14) 84239 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 493-52 chr11 91445961 91446242 + 3 NA Intergenic L1PREC2|LINE|L1 -576899 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 633-111 chr7 33665356 33665632 + 3 NA Intergenic Intergenic -239421 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 504-174 chr3 104934704 104934946 + 3 NA Intergenic LTR16|LTR|ERVL -431888 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 485-60 chr12 133155092 133155376 + 3 NA intron (NM_015394, intron 4 of 4) intron (NM_015394, intron 4 of 4) 24607 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 640-150 chrX 63566703 63567020 + 3 NA Intergenic L1MB8|LINE|L1 -5766 NR_152609 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 701-53 chr20 53510750 53511113 + 3 NA Intergenic Intergenic -41839 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 296-465 chr8 86876412 86876651 + 3 NA intron (NM_173538, intron 1 of 10) L1MD|LINE|L1 10116 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 473-22 chr1 225950133 225950335 + 3 NA Intergenic AluSz6|SINE|Alu -8742 NM_001172425 7044 Hs.520187 NM_003240 ENSG00000143768 LEFTY2 EBAF|LEFTA|LEFTYA|TGFB4 left-right determination factor 2 protein-coding 416-123 chr14 79732952 79733187 + 3 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) 453689 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 733-23 chr17 54541617 54542140 + 3 NA Intergenic L1MA2|LINE|L1 -358813 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 731-15 chr11 41169724 41170173 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 289688 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 405-144 chr2 97931175 97931437 + 3 NA intron (NM_015348, intron 1 of 40) intron (NM_015348, intron 1 of 40) 64642 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 565-86 chr2 126109047 126109343 + 3 NA TTS (NR_146970) TTS (NR_146970) 8790 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 411-150 chr2 99772760 99772970 + 3 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -282848 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 621-88 chr5 4706886 4707126 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -66475 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 414-50 chr11 90835503 90835709 + 3 NA intron (NR_104190, intron 4 of 6) intron (NR_104190, intron 4 of 6) 33596 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 449-269 chr8 56482636 56482887 + 3 NA intron (NR_125813, intron 1 of 3) intron (NR_125813, intron 1 of 3) -36120 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 1073-19 chr9 96816429 96816930 + 3 NA 3' UTR (NM_001346991, exon 5 of 5) 3' UTR (NM_001346991, exon 5 of 5) 37835 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 458-213 chr5 164513837 164514122 + 3 NA intron (NR_105065, intron 2 of 3) MLT1K|LTR|ERVL-MaLR 43700 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 527-220 chr6 27860679 27860974 + 3 NA Intergenic Intergenic -4503 NM_003511 8332 Hs.233568 NM_003511 ENSG00000276903 HIST1H2AL H2A.i|H2A/i|H2AFI|dJ193B12.9 histone cluster 1 H2A family member l protein-coding 451-73 chr14 76016596 76016771 + 3 NA intron (NM_001102564, intron 2 of 8) L1M2|LINE|L1 30920 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 562-206 chr7 88689001 88689262 + 3 NA Intergenic Intergenic -70569 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 396-368 chr9 27145142 27145403 + 3 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 36131 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 454-227 chr4 46784784 46785066 + 3 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 124320 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 500-242 chr6 28214256 28214491 + 3 NA TTS (NR_002936) TTS (NR_002936) 4556 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 557-9 chr1 90521774 90522135 + 3 NA Intergenic L1M4a1|LINE|L1 -135796 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 173-21 chr11 100173090 100173182 + 3 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -514152 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 469-207 chr4 170511840 170512103 + 3 NA Intergenic Intergenic 231764 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 790-57 chr8 138214289 138214796 + 3 NA intron (NM_015912, intron 7 of 19) L2c|LINE|L2 -130997 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 628-117 chr7 25454762 25455089 + 3 NA Intergenic MER20|DNA|hAT-Charlie 208215 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 847-31 chr20 61596822 61597371 + 3 NA intron (NM_001252338, intron 1 of 14) Charlie4a|DNA|hAT-Charlie -2665 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 806-36 chr20 33946251 33946586 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -47493 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 380-230 chr22 19022809 19022962 + 3 NA non-coding (NR_026651, exon 1 of 1) non-coding (NR_026651, exon 1 of 1) 261 NR_026651 26222 Hs.681383 NR_026651 DGCR10 DGS-B DiGeorge syndrome critical region gene 10 ncRNA 415-288 chr8 103685136 103685313 + 3 NA intron (NM_001348488, intron 3 of 25) MSTB|LTR|ERVL-MaLR -133996 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 400-252 chr4 65858950 65859186 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -188573 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 948-24 chr21 28371660 28372155 + 3 NA Intergenic L1MA3|LINE|L1 -143240 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 556-202 chr7 32146859 32147099 + 3 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -75543 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 451-133 chr21 17009952 17010212 + 3 NA Intergenic Intergenic 419845 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 689-9 chr1 215184399 215184803 + 3 NA intron (NM_001017424, intron 5 of 6) THE1C|LTR|ERVL-MaLR 101864 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 511-153 chr21 15676093 15676455 + 3 NA Intergenic Intergenic -53660 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 583-26 chr10 133447573 133447903 + 3 NA Intergenic L1MA5|LINE|L1 -6190 NR_149718 619207 Hs.659384 NM_001033584 ENSG00000214279 SCART1 - scavenger receptor family member expressed on T cells 1 pseudo 477-44 chr10 76883373 76883564 + 3 NA intron (NM_001322830, intron 30 of 30) intron (NM_001322830, intron 30 of 30) -4576 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 175-153 chr7 117429817 117429930 + 3 NA Intergenic L1MD|LINE|L1 -2380 NM_001301821 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 469-222 chr5 66249619 66249821 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -40274 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 450-198 chr3 89432056 89432342 + 3 NA intron (NM_005233, intron 13 of 16) L1ME4a|LINE|L1 324578 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 544-171 chr5 14134189 14134403 + 3 NA Intergenic L1MB7|LINE|L1 -9046 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 469-109 chr17 53974015 53974220 + 3 NA Intergenic Intergenic 151190 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 996-18 chr3 109495042 109495695 + 3 NA TTS (NR_109841) TTS (NR_109841) 85378 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 467-266 chr7 62749924 62750223 + 3 NA Intergenic ALR/Alpha|Satellite|centr 553983 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1429-4 chr4 103970058 103970880 + 3 NA Intergenic Intergenic -250484 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 337-91 chr11 55935481 55935732 + 3 NA exon (NM_006637, exon 1 of 1) exon (NM_006637, exon 1 of 1) 794 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 383-421 chrX 66624144 66624353 + 3 NA intron (NM_001199687, intron 1 of 6) AluSx|SINE|Alu -8218 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 413-211 chr4 35158901 35159131 + 3 NA Intergenic Intergenic -889269 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 344-229 chr2 21723812 21723959 + 3 NA Intergenic Intergenic -13233 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 395-30 chr10 26005685 26005928 + 3 NA intron (NM_001368265, intron 6 of 7) intron (NM_001368265, intron 6 of 7) 71577 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 758-54 chr3 94867484 94867941 + 3 NA Intergenic L1PA13|LINE|L1 -70551 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 520-25 chr1 240226327 240226580 + 3 NA intron (NM_020066, intron 6 of 17) L1M4b|LINE|L1 134570 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 479-104 chr2 79100297 79100479 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -12395 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 264-187 chr19 56903083 56903215 + 3 NA Intergenic L1ME3G|LINE|L1 62247 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 820-32 chr20 58537516 58538066 + 3 NA intron (NR_034147, intron 5 of 6) L1ME3A|LINE|L1 -22392 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 897-24 chr2 146651212 146651812 + 3 NA Intergenic L1MC1|LINE|L1 64455 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 477-286 chr8 109759951 109760128 + 3 NA Intergenic L1MA2|LINE|L1 -68248 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 749-35 chr15 67532977 67533275 + 3 NA Intergenic Intergenic -9577 NM_145160 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 496-256 chr7 23699846 23700027 + 3 NA intron (NM_199136, intron 5 of 6) L4_B_Mam|LINE|RTE-X -10283 NM_031414 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 699-40 chr17 10708694 10709039 + 3 NA intron (NM_020233, intron 3 of 3) MIR3|SINE|MIR 7716 NR_049723 100506898 Hs.674373 NR_049723 MAGOH2P MAGOH2 mago homolog 2, pseudogene pseudo 552-150 chr4 24179039 24179261 + 3 NA intron (NR_148982, intron 1 of 13) MIRc|SINE|MIR -289103 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 403-269 chr6 56941846 56942074 + 3 NA intron (NM_001144769, intron 2 of 96) L1MEf|LINE|L1 12870 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 490-60 chr11 111595626 111595838 + 3 NA Intergenic L1M3|LINE|L1 -6717 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 276-344 chr4 81125581 81125736 + 3 NA intron (NM_006259, intron 14 of 18) L1ME1|LINE|L1 28499 NM_001282482 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 496-218 chr5 86984560 86984844 + 3 NA Intergenic Intergenic 130252 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 705-31 chr15 26910770 26911267 + 3 NA intron (NM_001165037, intron 6 of 10) intron (NM_001165037, intron 6 of 10) 43892 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 404-225 chr4 10526127 10526303 + 3 NA intron (NM_052964, intron 13 of 18) intron (NM_052964, intron 13 of 18) -68789 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 577-128 chr4 31235483 31235937 + 3 NA Intergenic Intergenic 64566 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 739-41 chr2 160501600 160502101 + 3 NA Intergenic Zaphod3|DNA|hAT-Tip100 -8043 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 598-81 chr20 6622086 6622339 + 3 NA Intergenic Intergenic 113924 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 476-262 chr8 68963709 68963901 + 3 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 140385 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 578-82 chr2 66274323 66274764 + 3 NA Intergenic Intergenic 83785 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 422-210 chr4 63947901 63948136 + 3 NA Intergenic L1PA15|LINE|L1 461432 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 602-85 chr3 11552319 11552658 + 3 NA intron (NM_001349238, intron 17 of 17) (CAGTCC)n|Simple_repeat|Simple_repeat 16310 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 459-143 chr2 107180345 107180542 + 3 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 169082 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 439-115 chr18 11543358 11543612 + 3 NA Intergenic Intergenic 53437 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 1062-6 chr13 76039907 76040585 + 3 NA Intergenic Intergenic -105114 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 1100-3 chr10 41814378 41815147 + 3 NA Intergenic ALR/Alpha|Satellite|centr 553283 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 549-82 chr18 1909073 1909355 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -549585 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 580-201 chr8 126087319 126087671 + 3 NA Intergenic Intergenic -136298 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 413-226 chr4 123068336 123068547 + 3 NA intron (NM_001345856, intron 13 of 15) intron (NM_001345856, intron 13 of 15) 145363 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 611-76 chr2 78865869 78866257 + 3 NA Intergenic Intergenic -159639 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 162-133 chr8 106350866 106350956 + 3 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 80733 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 940-9 chr18 6224921 6225503 + 3 NA intron (NM_001365769, intron 10 of 16) L1MCc|LINE|L1 -31532 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 458-147 chr2 166817601 166817760 + 3 NA Intergenic AluSz|SINE|Alu -70807 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 904-3 chr10 55193113 55193734 + 3 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -392132 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 564-54 chr14 81810291 81810496 + 3 NA Intergenic L2a|LINE|L2 -67255 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 878-31 chr3 86145211 86145738 + 3 NA Intergenic Intergenic -317424 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 446-38 chr10 39105620 39105871 + 3 NA Intergenic ALR/Alpha|Satellite|centr 409149 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 478-190 chr3 82632465 82632639 + 3 NA Intergenic HAL1|LINE|L1 646410 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 423-255 chr6 160323804 160324118 + 3 NA Intergenic L1MC4|LINE|L1 -24417 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 516-133 chr2 124303424 124303698 + 3 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 278274 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 535-201 chr5 83013496 83013674 + 3 NA Intergenic Intergenic 50752 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 458-207 chr5 106437112 106437299 + 3 NA Intergenic Intergenic 573809 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 590-58 chr15 56380312 56380534 + 3 NA intron (NM_198524, intron 3 of 12) L1M1|LINE|L1 14999 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 478-267 chr7 43402599 43402794 + 3 NA intron (NM_001287059, intron 6 of 27) intron (NM_001287059, intron 6 of 27) 119846 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 969-8 chr12 129931604 129932146 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -27850 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 438-167 chr3 41410452 41410637 + 3 NA intron (NR_136342, intron 32 of 34) L1MB7|LINE|L1 211039 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 501-173 chr3 98002531 98002905 + 3 NA intron (NM_001105580, intron 7 of 9) intron (NM_001105580, intron 7 of 9) -30267 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 355-303 chr22 32982261 32982506 + 3 NA intron (NM_003490, intron 2 of 13) intron (NM_003490, intron 2 of 13) 24438 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 543-5 chr1 63167637 63167957 + 3 NA intron (NR_038252, intron 7 of 11) Charlie1a|DNA|hAT-Charlie 149460 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 390-345 chr7 14488399 14488656 + 3 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 352923 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 570-5 chr1 71750940 71751143 + 3 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 85971 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 925 chr1 30559541 30559987 + 3 NA Intergenic MER44B|DNA|TcMar-Tigger -159008 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 707-70 chr4 33679772 33680214 + 3 NA Intergenic Intergenic 359900 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 512-8 chr1 100686523 100686806 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -32976 NM_080682 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 492-126 chr2 41369516 41369689 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -507953 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 577-129 chr4 38620781 38621075 + 3 NA intron (NR_026804, intron 6 of 7) (ATAT)n|Simple_repeat|Simple_repeat -43271 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 408-251 chr4 152798555 152798726 + 3 NA intron (NM_001287433, intron 2 of 8) intron (NM_001287433, intron 2 of 8) 18686 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 1215-2 chr14 68108360 68108910 + 3 NA intron (NM_133509, intron 7 of 10) L1MB7|LINE|L1 285043 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 510-281 chr8 122664452 122664711 + 3 NA Intergenic MIRb|SINE|MIR 29525 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 524-239 chr7 64362939 64363244 + 3 NA Intergenic MER61-int|LTR|ERV1 49130 NM_001170905 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 465-237 chr5 123684077 123684304 + 3 NA Intergenic L1MD1|LINE|L1 138773 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 774-19 chr12 40362527 40363097 + 3 NA intron (NM_198578, intron 47 of 50) intron (NM_198578, intron 47 of 50) -30582 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 483-262 chr8 78818095 78818397 + 3 NA Intergenic Intergenic -12723 NM_001199887 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 774-12 chr11 41194079 41194482 + 3 NA intron (NM_001258419, intron 1 of 6) Tigger2|DNA|TcMar-Tigger 265356 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 339-37 chr1 198219210 198219365 + 3 NA intron (NM_133494, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat 62289 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 447-156 chr20 56158231 56158508 + 3 NA Intergenic Intergenic -90363 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 547-265 chr9 110327918 110328305 + 3 NA intron (NM_001286946, intron 2 of 4) MIRb|SINE|MIR 9752 NM_001003936 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 384-49 chr11 11580210 11580369 + 3 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) 41716 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 573-186 chr7 62957598 62957834 + 3 NA Intergenic ALR/Alpha|Satellite|centr 346340 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 984-3 chr14 65396003 65396630 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -14276 NR_038167 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 525-41 chr11 41139549 41139735 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 319994 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 760-32 chr2 117592345 117592917 + 3 NA Intergenic L1PB1|LINE|L1 -222060 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 525-214 chr6 5738268 5738606 + 3 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) -43165 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 356-227 chr2 21516529 21516678 + 3 NA Intergenic L1MEd|LINE|L1 194049 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 438-104 chr19 31524040 31524305 + 3 NA Intergenic L1MEc|LINE|L1 -64017 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 698-20 chr12 44469374 44469791 + 3 NA Intergenic MIR1_Amn|SINE|MIR 406079 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 655-30 chr12 112754063 112754410 + 3 NA intron (NM_001347952, intron 1 of 21) MIRb|SINE|MIR -37302 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 506-286 chr8 108049138 108049365 + 3 NA intron (NM_178565, intron 2 of 5) L1PA6|LINE|L1 32688 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 244-358 chr8 31813736 31813869 + 3 NA intron (NM_013962, intron 1 of 4) AluJb|SINE|Alu 174050 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 457-10 chr1 105197108 105197313 + 3 NA Intergenic L1MC|LINE|L1 421725 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 928-4 chr13 102733851 102734400 + 3 NA exon (NM_001146197, exon 4 of 4) exon (NM_001146197, exon 4 of 4) 24947 NM_001146197 643677 Hs.368382 NM_001146197 ENSG00000175820 CCDC168 C13orf40 coiled-coil domain containing 168 protein-coding 599-97 chr4 55819827 55820131 + 3 NA promoter-TSS (NM_001351575) promoter-TSS (NM_001351575) -24 NM_001351574 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 456-252 chr5 82101488 82101803 + 3 NA intron (NM_031482, intron 3 of 7) L3b|LINE|CR1 129622 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 420-57 chr12 1371744 1371979 + 3 NA exon (NM_178039, exon 15 of 18) exon (NM_178039, exon 15 of 18) -128630 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 614-115 chr7 4672218 4672568 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -9902 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 738-41 chr3 26357295 26357783 + 3 NA Intergenic Intergenic -265267 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 430-111 chr17 39291534 39291699 + 3 NA intron (NM_001370208, intron 6 of 14) AluSz|SINE|Alu -5784 NR_162098 113839521 NR_162098 MIR548BC - microRNA 548BC ncRNA 774-24 chr13 100943915 100944214 + 3 NA intron (NR_047015, intron 1 of 2) intron (NR_047015, intron 1 of 2) 300 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 754-2 chr1 192083305 192083735 + 3 NA Intergenic Intergenic -74942 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 494-264 chr7 39712892 39713133 + 3 NA Intergenic Intergenic -20556 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 620-123 chr6 146153195 146153563 + 3 NA intron (NM_001278065, intron 2 of 9) MIRc|SINE|MIR 124181 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 406-52 chr11 59301733 59301990 + 3 NA Intergenic Intergenic -62598 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 476-65 chr12 69198934 69199152 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -40526 NM_007007 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 350-233 chr2 107355325 107355506 + 3 NA Intergenic L1MB7|LINE|L1 -5890 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 222-321 chr6 40964372 40964480 + 3 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 58854 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 438-248 chr7 3848401 3848658 + 3 NA intron (NM_152744, intron 5 of 44) Charlie2a|DNA|hAT-Charlie -281156 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 399-86 chr14 56461205 56461381 + 3 NA Intergenic Intergenic -53038 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 370-210 chr2 3554867 3555035 + 3 NA intron (NR_148533, intron 2 of 7) intron (NR_148533, intron 2 of 7) 3382 NM_001286837 246243 Hs.568006 NM_002936 ENSG00000171865 RNASEH1 H1RNA|PEOB2|RNH1 ribonuclease H1 protein-coding 419-254 chr6 83840371 83840587 + 3 NA Intergenic L1MC4|LINE|L1 -12787 NM_001009994 134701 Hs.149454 NM_001009994 ENSG00000203877 RIPPLY2 C6orf159|SCDO6|dJ237I15.1 ripply transcriptional repressor 2 protein-coding 365-193 chr2 75881650 75881879 + 3 NA Intergenic Intergenic -170849 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 741-74 chr8 103560741 103561199 + 3 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -59060 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 537-210 chr6 33917877 33918198 + 3 NA Intergenic Intergenic 18902 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 449-225 chr5 151371083 151371315 + 3 NA Intergenic Intergenic -23640 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 624-36 chr14 68317913 68318271 + 3 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 310695 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 714-37 chr2 81831020 81831485 + 3 NA Intergenic L1MA7|LINE|L1 -364306 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 442-273 chr7 38047036 38047225 + 3 NA Intergenic L1MA4A|LINE|L1 125811 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 486-232 chr4 156118443 156118684 + 3 NA Intergenic L1MC1|LINE|L1 -164697 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 563-42 chr12 97235866 97236239 + 3 NA Intergenic L1MC5|LINE|L1 -226724 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 1153-11 chr2 149862701 149863392 + 3 NA Intergenic L1MD2|LINE|L1 -3855 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 694-120 chr7 19604196 19604634 + 3 NA Intergenic L1MC5|LINE|L1 101021 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 639-61 chr2 86265381 86265739 + 3 NA intron (NM_001164731, intron 1 of 5) L1PB4|LINE|L1 66103 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 565-35 chr12 81624128 81624436 + 3 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) -25911 NM_001220477 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 556-54 chr12 90567234 90567467 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 274032 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 621-126 chr8 48389527 48389939 + 3 NA Intergenic L1PA7|LINE|L1 -161834 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 522-238 chr7 94850158 94850346 + 3 NA Intergenic Intergenic -57342 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 857-37 chr3 81035515 81036097 + 3 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 41938 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 775-14 chr11 16706827 16707138 + 3 NA intron (NM_001367872, intron 2 of 16) intron (NM_001367872, intron 2 of 16) 31495 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 633-53 chr19 24304156 24304625 + 3 NA Intergenic ALR/Alpha|Satellite|centr -140943 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 1126-2 chr11 17916156 17916647 + 3 NA intron (NR_104041, intron 8 of 9) intron (NR_104041, intron 8 of 9) 96646 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 446-290 chr7 128098000 128098339 + 3 NA Intergenic L1ME3E|LINE|L1 16308 NR_030324 693178 NR_030324 ENSG00000207588 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 755-20 chr14 46782887 46783290 + 3 NA Intergenic L1P4a|LINE|L1 -131307 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 504-106 chr18 28867692 28867994 + 3 NA Intergenic Intergenic -690713 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 899-11 chr16 63945863 63946438 + 3 NA Intergenic Intergenic 1175913 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 505-111 chr16 83856566 83856866 + 3 NA Intergenic Intergenic -42399 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 514-118 chr17 49176852 49177161 + 3 NA TTS (NM_001159387) TTS (NM_001159387) 32375 NM_031498 2793 Hs.181781 NM_031498 ENSG00000167083 GNGT2 G-GAMMA-8|G-GAMMA-C|GNG8|GNG9|GNGT8 G protein subunit gamma transducin 2 protein-coding 919-26 chr9 23361985 23362508 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 310153 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 232-200 chr2 195620799 195620933 + 3 NA Intergenic Intergenic -36092 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 618-37 chr15 64223978 64224382 + 3 NA intron (NM_001329607, intron 4 of 11) intron (NM_001329607, intron 4 of 11) -61025 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 408-146 chr19 27656297 27656495 + 3 NA Intergenic HSAT4|Satellite|centr -137035 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 1028-18 chr8 137352324 137352946 + 3 NA Intergenic L1PA14|LINE|L1 60953 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 374-30 chr10 43612272 43612496 + 3 NA intron (NM_145312, intron 4 of 4) intron (NM_145312, intron 4 of 4) 5946 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 406-181 chr3 6992383 6992563 + 3 NA intron (NM_000844, intron 1 of 9) LTR33|LTR|ERVL -98456 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 411-264 chr6 145992924 145993106 + 3 NA Intergenic Intergenic -28657 NM_001370327 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 594-5 chr1 104514125 104514414 + 3 NA Intergenic Intergenic 441246 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 999-8 chr2 129033979 129034541 + 3 NA Intergenic L1PB3|LINE|L1 169660 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 581-173 chr8 83421400 83421687 + 3 NA Intergenic HERVL74-int|LTR|ERVL 17785 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 244-245 chr3 180245936 180246082 + 3 NA Intergenic LTR40b|LTR|ERVL -168164 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 390-431 chrX 44047956 44048163 + 3 NA Intergenic Intergenic -74669 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 499-46 chr11 90532814 90533101 + 3 NA intron (NR_104190, intron 1 of 6) MamTip2|DNA|hAT-Tip100 22900 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 706-80 chr9 135626129 135626630 + 3 NA intron (NM_182974, intron 3 of 4) MIR|SINE|MIR 13161 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 443-304 chr9 15986550 15986840 + 3 NA Intergenic Intergenic 266412 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 360-426 chr6 162083431 162083555 + 3 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) 612516 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 921-28 chr9 72922850 72923232 + 3 NA intron (NM_000689, intron 7 of 12) intron (NM_000689, intron 7 of 12) 30012 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 1733-3 chr2 45150621 45151603 + 3 NA Intergenic Intergenic 103829 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 497-131 chr2 106686059 106686285 + 3 NA Intergenic AluY|SINE|Alu 198808 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 273-269 chr21 28077318 28077486 + 3 NA intron (NR_126010, intron 1 of 4) (TA)n|Simple_repeat|Simple_repeat -13001 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 475-26 chr10 69552776 69553042 + 3 NA Intergenic Intergenic 20513 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 706-32 chr17 31644757 31645216 + 3 NA Intergenic MLT2B4|LTR|ERVL 69575 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 478-159 chr2 227003248 227003572 + 3 NA 3' UTR (NM_000092, exon 48 of 48) 3' UTR (NM_000092, exon 48 of 48) 161149 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 861-32 chr8 91911155 91911602 + 3 NA Intergenic MER112|DNA|hAT-Charlie 106302 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 481-164 chr2 235603276 235603550 + 3 NA intron (NM_001037131, intron 1 of 17) L2a|LINE|L2 -85492 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 503-285 chr8 118586805 118587147 + 3 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -34025 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 688-76 chr3 99246465 99246877 + 3 NA Intergenic LTR50|LTR|ERVL -344976 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 550-222 chr7 118493339 118493587 + 3 NA Intergenic HAL1|LINE|L1 268759 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 486-157 chr2 151737160 151737515 + 3 NA Intergenic MIR|SINE|MIR -2850 NM_001164507 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 715-88 chr8 124050632 124051083 + 3 NA intron (NM_001039112, intron 22 of 40) MLT1A|LTR|ERVL-MaLR -10075 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 646-62 chr2 134221638 134222062 + 3 NA intron (NM_001371457, intron 1 of 16) MER4E|LTR|ERV1 -32222 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 825-25 chr2 225873091 225873537 + 3 NA Intergenic L2a|LINE|L2 -269480 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 737-50 chr21 27205427 27205860 + 3 NA Intergenic Intergenic -238555 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 953-11 chr18 7708747 7709271 + 3 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 141693 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 885-22 chr5 121355207 121355752 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X 32929 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 374-381 chr8 51619856 51620053 + 3 NA intron (NM_144651, intron 2 of 22) MER39|LTR|ERV1 189491 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 904-24 chr2 98496283 98496919 + 3 NA intron (NM_001351428, intron 1 of 24) L1M4b|LINE|L1 50591 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 571-153 chr7 11862688 11862975 + 3 NA Intergenic L2c|LINE|L2 -30633 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 404-81 chr12 50929373 50929533 + 3 NA intron (NM_014033, intron 1 of 1) intron (NM_014033, intron 1 of 1) 4438 NM_014033 25840 Hs.711113 NM_014033 ENSG00000185432 METTL7A AAM-B|AAMB methyltransferase like 7A protein-coding 372-441 chr6 110053906 110054054 + 3 NA Intergenic Intergenic 75669 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 549-28 chr10 68209353 68209583 + 3 NA intron (NR_045663, intron 17 of 17) intron (NR_045663, intron 17 of 17) 22645 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 465-131 chr2 110912591 110912922 + 3 NA intron (NM_001371254, intron 11 of 18) L1MB7|LINE|L1 180183 NM_001371254 351-377 chr5 33060359 33060498 + 3 NA Intergenic Intergenic 112985 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 701-64 chr3 95947101 95947457 + 3 NA Intergenic L1MA6|LINE|L1 -264086 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 368-255 chr2 207591825 207591957 + 3 NA intron (NM_001330133, intron 3 of 3) intron (NM_001330133, intron 3 of 3) 32769 NM_001371428 192-2 chr1 24820382 24820463 + 3 NA intron (NM_013943, intron 3 of 5) AluJr|SINE|Alu 74975 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 467-129 chr2 18116052 18116375 + 3 NA Intergenic Intergenic 237546 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 444-141 chr20 40452527 40452764 + 3 NA Intergenic L1PA15|LINE|L1 236591 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 237-154 chr19 37591806 37591956 + 3 NA intron (NM_016536, intron 1 of 3) L1MC5a|LINE|L1 2865 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 268-331 chr6 11516582 11516727 + 3 NA Intergenic Intergenic -21095 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 933-8 chr12 34439423 34440109 + 3 NA Intergenic ALR/Alpha|Satellite|centr 417270 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 425-171 chr21 30093877 30094113 + 3 NA Intergenic Intergenic 72810 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 717-78 chr7 91697913 91698420 + 3 NA Intergenic Intergenic 182536 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 315-25 chr1 154812618 154812803 + 3 NA intron (NM_170782, intron 2 of 7) intron (NM_170782, intron 2 of 7) 47166 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 370-120 chr12 117249188 117249441 + 3 NA intron (NM_001204213, intron 16 of 27) intron (NM_001204213, intron 16 of 27) 55738 NM_001204213 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 467-63 chr12 26200457 26200733 + 3 NA intron (NM_005086, intron 1 of 2) intron (NM_005086, intron 1 of 2) 5022 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 432-118 chr2 15709049 15709249 + 3 NA intron (NR_110201, intron 4 of 5) intron (NR_110201, intron 4 of 5) 18367 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 536-45 chr11 37306570 37306891 + 3 NA Intergenic Intergenic -631871 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 351-126 chr14 61948467 61948627 + 3 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 20852 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 418-139 chr20 10393886 10394048 + 3 NA Intergenic Intergenic 37958 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 482-97 chr17 52374503 52374681 + 3 NA Intergenic Intergenic -15930 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 533-168 chr4 176591318 176591622 + 3 NA Intergenic LTR103b_Mam|LTR|ERV1? 201452 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 481-255 chr5 144025380 144025699 + 3 NA Intergenic L1MEg|LINE|L1 145120 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 483-138 chr20 12463424 12463672 + 3 NA Intergenic L2a|LINE|L2 473415 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 512-44 chr10 129552970 129553155 + 3 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 85821 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 1145-11 chr7 717725 718120 + 3 NA intron (NM_001164759, intron 1 of 10) MLT1F2|LTR|ERVL-MaLR -4715 NM_001164761 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 225-41 chr10 92847170 92847291 + 3 NA intron (NM_001319194, intron 2 of 22) MLT1D|LTR|ERVL-MaLR -1225 NM_001319200 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 546-68 chr14 42889652 42889967 + 3 NA Intergenic L2c|LINE|L2 1282953 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 685-55 chr2 183800398 183800806 + 3 NA Intergenic L1PA8A|LINE|L1 -578373 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 1087-19 chr7 62889868 62890372 + 3 NA Intergenic ALR/Alpha|Satellite|centr 413936 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 210-46 chr11 79945959 79946096 + 3 NA Intergenic L1MEc|LINE|L1 -504997 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 486-239 chr5 41595810 41596097 + 3 NA Intergenic L1MEd|LINE|L1 -85352 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 525-136 chr2 241786027 241786350 + 3 NA intron (NM_022134, intron 1 of 3) MER4-int|LTR|ERV1 9366 NM_022134 64090 Hs.632556 NM_022134 ENSG00000154252 GAL3ST2 GAL3ST-2|GP3ST galactose-3-O-sulfotransferase 2 protein-coding 507-245 chr8 81619031 81619349 + 3 NA intron (NR_146081, intron 6 of 7) LTR56|LTR|ERV1 12087 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 542-74 chr16 65741173 65741358 + 3 NA Intergenic Intergenic -164965 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 523-235 chr5 163286441 163286720 + 3 NA Intergenic MamRep1879|DNA|hAT-Tip100? -150991 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 507-52 chr11 54970460 54970764 + 3 NA Intergenic ALR/Alpha|Satellite|centr 263780 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 391-319 chr6 164520518 164520784 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 301412 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 490-287 chr8 77459832 77460094 + 3 NA intron (NR_125830, intron 1 of 2) intron (NR_125830, intron 1 of 2) 9266 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 331-531 chr8 84301822 84301971 + 3 NA intron (NM_001354320, intron 2 of 9) Tigger6a|DNA|TcMar-Tigger -113588 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 525-118 chr2 75295872 75296101 + 3 NA Intergenic MIRc|SINE|MIR -96466 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 809-58 chrX 77466463 77466962 + 3 NA Intergenic L1MA7|LINE|L1 19323 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 216-216 chr3 58213250 58213356 + 3 NA Intergenic Intergenic -2300 NM_001256560 1776 Hs.476453 NM_004944 ENSG00000163687 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease 1 like 3 protein-coding 254-191 chr2 111084974 111085108 + 3 NA intron (NM_001371254, intron 17 of 18) L1PREC2|LINE|L1 30547 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 413-143 chr2 88625983 88626258 + 3 NA intron (NM_004836, intron 1 of 16) intron (NM_004836, intron 1 of 16) -1191 NM_001313915 9451 Hs.591589 NM_004836 ENSG00000172071 EIF2AK3 PEK|PERK|WRS eukaryotic translation initiation factor 2 alpha kinase 3 protein-coding 991-3 chr10 33115052 33115478 + 3 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 1542 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 381-266 chr4 36534746 36534939 + 3 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 107058 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 489-64 chr12 130503429 130503619 + 3 NA intron (NM_001351226, intron 4 of 21) intron (NM_001351226, intron 4 of 21) 124932 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 982-21 chr4 76914253 76914636 + 3 NA Intergenic Charlie20a|DNA|hAT-Charlie -16300 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 331-44 chr10 21455655 21455870 + 3 NA Intergenic (AGAA)n|Simple_repeat|Simple_repeat 40879 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 873-12 chr18 55937272 55937731 + 3 NA Intergenic HAL1|LINE|L1 -17302 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 893-17 chr14 20071190 20071748 + 3 NA Intergenic AluSx1|SINE|Alu 11424 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 639-81 chr3 100224406 100224781 + 3 NA Intergenic L1MB3|LINE|L1 -36399 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 168-78 chr3 186556159 186556220 + 3 NA intron (NM_001134415, intron 4 of 7) intron (NM_001134415, intron 4 of 7) 11150 NM_018138 55171 Hs.518469 NM_018138 ENSG00000113838 TBCCD1 - TBCC domain containing 1 protein-coding 408-189 chr20 57859308 57859501 + 3 NA Intergenic L1MB7|LINE|L1 -144500 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 335-489 chr7 10512090 10512221 + 3 NA intron (NR_147499, intron 2 of 2) L1M1|LINE|L1 -190521 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 570-85 chr16 78636659 78636911 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 537131 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 466-284 chr8 135401333 135401551 + 3 NA Intergenic Intergenic -56014 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 883-47 chrX 83297913 83298419 + 3 NA Intergenic L1PREC2|LINE|L1 -210124 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 739-55 chr5 21872397 21872852 + 3 NA intron (NM_004061, intron 6 of 14) intron (NM_004061, intron 6 of 14) -11830 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 607-137 chr7 71890357 71890676 + 3 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 446875 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 283-339 chr4 174787142 174787278 + 3 NA intron (NM_006529, intron 2 of 9) intron (NM_006529, intron 2 of 9) 42037 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 312-412 chr5 42640716 42640877 + 3 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 74932 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 344-278 chr20 41911526 41911752 + 3 NA Intergenic L1ME3B|LINE|L1 -293262 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 364-301 chr4 43473529 43473692 + 3 NA intron (NR_146993, intron 1 of 2) L1M1|LINE|L1 18933 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 484-260 chr8 56799095 56799498 + 3 NA Intergenic Intergenic 194571 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 689-58 chr21 19225554 19225904 + 3 NA Intergenic Intergenic -465917 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 535-125 chr2 57736717 57737094 + 3 NA Intergenic MLT2A2|LTR|ERVL -170746 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 434-74 chr13 87031322 87031516 + 3 NA Intergenic Intergenic 119499 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 447-172 chr3 65361081 65361261 + 3 NA exon (NM_001365905, exon 23 of 23) exon (NM_001365905, exon 23 of 23) -532645 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 249-319 chr5 7478329 7478444 + 3 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 82248 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 528-166 chr3 131662461 131662684 + 3 NA intron (NM_130808, intron 7 of 15) L1PA8|LINE|L1 -159601 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 233-376 chr8 98626515 98626677 + 3 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 199075 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 460-275 chr7 88278152 88278399 + 3 NA 3' UTR (NM_001205315, exon 6 of 6) 3' UTR (NM_001205315, exon 6 of 6) 28619 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 573-195 chr8 83579435 83579741 + 3 NA Intergenic Intergenic 175830 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 775-46 chr2 105823495 105823926 + 3 NA intron (NM_003581, intron 2 of 4) intron (NM_003581, intron 2 of 4) -28137 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 764-11 chr10 89394655 89395151 + 3 NA intron (NM_001270930, intron 2 of 2) L1MB5|LINE|L1 2280 NM_001270927 3434 Hs.20315 NM_001548 ENSG00000185745 IFIT1 C56|G10P1|IFI-56|IFI-56K|IFI56|IFIT-1|IFNAI1|ISG56|P56|RNM561 interferon induced protein with tetratricopeptide repeats 1 protein-coding 762-46 chr3 185060900 185061264 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 91978 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 626-92 chr3 84623104 84623512 + 3 NA Intergenic Intergenic 246267 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 640-70 chr20 6913089 6913446 + 3 NA Intergenic Intergenic 145581 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 456-128 chr17 71487227 71487448 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -285158 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 813-15 chr17 50233445 50233907 + 3 NA Intergenic L1MB8|LINE|L1 18982 NR_110806 101927230 Hs.514326 NR_110806 LINC01969 - long intergenic non-protein coding RNA 1969 ncRNA 666-61 chr2 133419513 133419977 + 3 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 148718 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 513-118 chr19 38759118 38759359 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger 14279 NM_002307 3963 Hs.702546 NM_002307 ENSG00000205076 LGALS7 GAL7|LGALS7A galectin 7 protein-coding 622-44 chr17 71896762 71897100 + 3 NA Intergenic Intergenic 129048 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 240-415 chr8 88978025 88978110 + 3 NA Intergenic L1MC5a|LINE|L1 -650584 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 891-38 chr8 50579319 50579869 + 3 NA intron (NR_135797, intron 14 of 20) THE1C-int|LTR|ERVL-MaLR 415463 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 1008-14 chr3 131127930 131128400 + 3 NA intron (NM_001353036, intron 5 of 14) L1MC1|LINE|L1 100437 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 201-86 chr15 46730311 46730397 + 3 NA Intergenic Intergenic -453735 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 591-151 chr7 12074349 12074676 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 -136782 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 549-4 chr1 49311769 49312041 + 3 NA intron (NR_136623, intron 2 of 12) L1MC2|LINE|L1 54494 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 712-57 chr3 20075819 20076231 + 3 NA intron (NM_003884, intron 2 of 17) MER21C|LTR|ERVL 35579 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 463-32 chr10 22790120 22790451 + 3 NA Intergenic L1MA8|LINE|L1 -75707 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 526-30 chr10 131051586 131051780 + 3 NA Intergenic MER21C|LTR|ERVL -43535 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 628-143 chrX 53822973 53823402 + 3 NA Intergenic L1MA7|LINE|L1 -136468 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 433-84 chr14 80050739 80050910 + 3 NA Intergenic L1ME1|LINE|L1 -160595 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 603-74 chr19 44545490 44545741 + 3 NA intron (NR_027754, intron 3 of 7) intron (NR_027754, intron 3 of 7) 11302 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 656-60 chr2 101565296 101565699 + 3 NA Intergenic AluSg|SINE|Alu -90385 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 365-123 chr14 65509980 65510192 + 3 NA intron (NM_004480, intron 2 of 9) L1MA2|LINE|L1 38984 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 732-64 chr3 98676774 98677209 + 3 NA Intergenic L1ME2|LINE|L1 -55245 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 950-6 chr1 214802401 214802937 + 3 NA Intergenic Intergenic 199474 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 495-98 chr19 52384479 52384702 + 3 NA exon (NM_001145434, exon 4 of 4) exon (NM_001145434, exon 4 of 4) 13167 NR_125345 102724105 Hs.188680 NR_125345 ENSG00000269834 ZNF528-AS1 - ZNF528 antisense RNA 1 ncRNA 664-108 chr7 56451427 56451901 + 3 NA Intergenic Intergenic -3289 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 596-182 chrX 115926742 115926975 + 3 NA intron (NR_130730, intron 2 of 2) L1PB4|LINE|L1 42253 NR_132337 642776 Hs.634316 NR_130730 ENSG00000235244 DANT2 - DXZ4 associated non-coding transcript 2, distal ncRNA 340-533 chr8 79459773 79459913 + 3 NA Intergenic Intergenic 127655 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 388-96 chr13 85075459 85075682 + 3 NA intron (NR_126383, intron 3 of 5) intron (NR_126383, intron 3 of 5) 72487 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 507-17 chr1 189215446 189215640 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 1260467 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 494-113 chr19 12218727 12218929 + 3 NA Intergenic L1M1|LINE|L1 23813 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 262-21 chr1 158724310 158724411 + 3 NA Intergenic Intergenic -6245 NM_001005327 391114 Hs.554488 NM_001005327 ENSG00000203757 OR6K3 OR1-18 olfactory receptor family 6 subfamily K member 3 protein-coding 304-63 chr10 108281765 108281873 + 3 NA Intergenic Intergenic -212526 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 493-97 chr16 3917689 3917869 + 3 NA Intergenic FLAM_A|SINE|Alu 32665 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 972-5 chr13 90577360 90577747 + 3 NA Intergenic MamGyp-int|LTR|Gypsy 84265 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 290-91 chr11 121949605 121949821 + 3 NA Intergenic Intergenic 150131 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 441-13 chr1 186167597 186167775 + 3 NA intron (NM_031935, intron 100 of 106) L1MC1|LINE|L1 -128587 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 950-7 chr12 22612185 22612693 + 3 NA intron (NR_135031, intron 1 of 1) intron (NR_135031, intron 1 of 1) 12607 NR_135031 105369691 Hs.556287 NR_135030 LOC105369691 - uncharacterized LOC105369691 ncRNA 508-58 chr14 43499888 43500212 + 3 NA Intergenic L1PA11|LINE|L1 1007233 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 595-77 chr2 33906723 33907123 + 3 NA intron (NR_126403, intron 2 of 5) AluY|SINE|Alu -160303 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 331-556 chr9 74121402 74121622 + 3 NA Intergenic Intergenic -250019 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 544-133 chr2 194863884 194864123 + 3 NA Intergenic Intergenic 133408 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 404-126 chr16 82331033 82331325 + 3 NA Intergenic Intergenic -160955 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 790-9 chr12 59253578 59254052 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -333277 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 551-192 chr7 54626467 54626703 + 3 NA Intergenic L1MB4|LINE|L1 69615 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 385-22 chr10 17567080 17567259 + 3 NA Intergenic L2c|LINE|L2 50205 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 397-197 chr22 47383007 47383326 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 37595 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 850-51 chr8 112106685 112107035 + 3 NA Intergenic L1M4c|LINE|L1 -536633 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 543-183 chr4 63636375 63636708 + 3 NA Intergenic HAL1ME|LINE|L1 772909 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 481-123 chr18 13975616 13975929 + 3 NA Intergenic Intergenic -60065 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 475-237 chr6 11782407 11782648 + 3 NA Intergenic Intergenic -3480 NM_032744 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 636-125 chr6 49147880 49148252 + 3 NA Intergenic L1PA8|LINE|L1 315187 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 652-89 chr4 153864486 153864887 + 3 NA Intergenic L1PBa|LINE|L1 -75603 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 510-241 chr6 9861414 9861683 + 3 NA Intergenic L1MCc|LINE|L1 -542954 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 480-198 chr3 127830151 127830357 + 3 NA Intergenic L1MD2|LINE|L1 -7004 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 222-341 chr7 50369730 50369865 + 3 NA TTS (NM_001291845) TTS (NM_001291845) 50749 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 717-70 chr5 94220656 94220942 + 3 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -109100 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 399-140 chr2 48155874 48156077 + 3 NA Intergenic L1MA4|LINE|L1 -158707 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 521-77 chr13 111884850 111885154 + 3 NA Intergenic Intergenic -8376 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 1212-9 chr4 151775213 151775868 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -14517 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 571-135 chr5 68611916 68612144 + 3 NA Intergenic L1MA4A|LINE|L1 319453 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 489-94 chr16 6579594 6579917 + 3 NA intron (NM_018723, intron 2 of 15) AluJr4|SINE|Alu -194054 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 977-14 chr4 178645966 178646418 + 3 NA Intergenic L1MA3|LINE|L1 -738256 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 533-201 chr6 78822105 78822443 + 3 NA Intergenic HAL1|LINE|L1 -45277 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 541-108 chr2 24150976 24151258 + 3 NA intron (NM_001145710, intron 7 of 10) L1M1|LINE|L1 -23936 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 375-257 chr22 47411897 47412119 + 3 NA Intergenic L1MEc|LINE|L1 66437 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 328-81 chr11 41157256 41157483 + 3 NA intron (NM_001258419, intron 1 of 6) L2a|LINE|L2 302267 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 200-23 chr1 231036583 231036701 + 3 NA intron (NM_198552, intron 1 of 1) intron (NM_198552, intron 1 of 1) 3612 NM_198552 375061 Hs.38516 NM_198552 ENSG00000182118 FAM89A C1orf153 family with sequence similarity 89 member A protein-coding 398-308 chr6 133575799 133576008 + 3 NA intron (NR_109982, intron 4 of 8) L1MDa|LINE|L1 -245244 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 508-241 chr8 107664345 107664677 + 3 NA Intergenic Intergenic -166593 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 321-336 chr20 55260412 55260540 + 3 NA Intergenic Intergenic -162567 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 531-46 chr12 59743800 59744070 + 3 NA intron (NR_073056, intron 3 of 6) MIRb|SINE|MIR 54565 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 169-63 chr2 235123489 235123580 + 3 NA Intergenic L1ME1|LINE|L1 95799 NM_001371306 500-206 chr4 67108929 67109203 + 3 NA Intergenic Intergenic 312934 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 291-306 chr3 192599272 192599426 + 3 NA intron (NM_004113, intron 2 of 5) MIRb|SINE|MIR 84327 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 465-296 chr8 120738004 120738212 + 3 NA intron (NM_021021, intron 1 of 6) MLT1A0|LTR|ERVL-MaLR -23145 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 487-216 chr4 94681232 94681406 + 3 NA Intergenic Intergenic 76214 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 1029-16 chr8 104569531 104570020 + 3 NA intron (NM_013437, intron 1 of 6) L1ME1|LINE|L1 19249 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 559-198 chr8 142321478 142321785 + 3 NA intron (NM_001366903, intron 6 of 9) L1MD|LINE|L1 81551 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 332-382 chr4 91708243 91708422 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR 568970 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 287-184 chr2 10376240 10376400 + 3 NA intron (NM_001258359, intron 1 of 4) intron (NM_001258359, intron 1 of 4) 7556 NM_001258359 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 685-86 chr7 21061626 21061986 + 3 NA Intergenic Intergenic 226375 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 506-5 chr1 67885482 67885748 + 3 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -52148 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 399-40 chr10 88046172 88046331 + 3 NA Intergenic Intergenic 182626 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 462-174 chr3 39522717 39523005 + 3 NA intron (NR_003090, intron 4 of 5) intron (NR_003090, intron 4 of 5) 20795 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 511-5 chr1 95526618 95526826 + 3 NA Intergenic LTR103_Mam|LTR|ERV1? 16606 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 687-68 chr2 238754074 238754506 + 3 NA Intergenic Intergenic 93617 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 285-399 chr8 34104098 34104207 + 3 NA Intergenic L1MEc|LINE|L1 -504046 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 537-128 chr2 133302950 133303165 + 3 NA exon (NM_207363, exon 4 of 20) exon (NM_207363, exon 4 of 20) 36862 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 716-28 chr16 17194012 17194339 + 3 NA intron (NM_022166, intron 5 of 11) intron (NM_022166, intron 5 of 11) 59671 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 769-57 chr6 85886582 85887026 + 3 NA Intergenic Intergenic -208071 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 505-118 chr18 10443409 10443687 + 3 NA Intergenic Intergenic -11087 NM_153000 147495 Hs.293274 NM_153000 ENSG00000154856 APCDD1 B7323|DRAPC1|FP7019|HHS|HTS|HYPT1 APC down-regulated 1 protein-coding 590-156 chr7 62589726 62590117 + 3 NA Intergenic ALR/Alpha|Satellite|centr 714135 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 482-120 chr2 48836402 48836569 + 3 NA Intergenic L1MA6|LINE|L1 -80761 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 358-91 chr12 21960708 21960974 + 3 NA Intergenic L1M2|LINE|L1 -24147 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 297-176 chr17 69962562 69962749 + 3 NA intron (NR_110875, intron 1 of 4) intron (NR_110875, intron 1 of 4) 948 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 391-79 chr12 92740193 92740415 + 3 NA intron (NM_001004330, intron 2 of 11) intron (NM_001004330, intron 2 of 11) 3815 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 385-395 chr8 136455493 136455657 + 3 NA Intergenic MER21B|LTR|ERVL -75223 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 848-22 chr2 37495767 37496339 + 3 NA Intergenic L1PA2|LINE|L1 151423 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 452-218 chr5 143838463 143838692 + 3 NA Intergenic Intergenic 26416 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 353-452 chr6 62946765 62946887 + 3 NA Intergenic MER50B|LTR|ERV1 373151 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 522-189 chr4 43950274 43950502 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -66473 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 558-73 chr17 59846031 59846472 + 3 NA Intergenic Intergenic 4985 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 565-95 chr20 13743697 13743984 + 3 NA intron (NM_001276380, intron 9 of 13) L1MA9|LINE|L1 41046 NM_016649 51575 Hs.369284 NM_016649 ENSG00000089048 ESF1 ABTAP|C20orf6|HDCMC28P|bA526K24.1 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 439-64 chr12 15364255 15364459 + 3 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 41849 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 579-67 chr2 48006283 48006559 + 3 NA Intergenic MER101|LTR|ERV1 -100628 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 360-198 chr2 8208749 8208896 + 3 NA intron (NR_152741, intron 9 of 9) L1MDa|LINE|L1 119597 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 491-269 chr8 135368951 135369209 + 3 NA Intergenic Intergenic -88376 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 382-289 chr4 34161052 34161336 + 3 NA intron (NR_147184, intron 2 of 3) L1MA2|LINE|L1 108553 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 559-64 chr16 61545417 61545633 + 3 NA Intergenic Intergenic -489759 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 447-85 chr15 100100598 100100770 + 3 NA intron (NM_139057, intron 14 of 21) intron (NM_139057, intron 14 of 21) 241291 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 549-185 chr6 140026031 140026304 + 3 NA intron (NR_121623, intron 1 of 1) L1ME1|LINE|L1 -34906 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 505-296 chr8 14809237 14809635 + 3 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 44074 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 835 chr1 49649647 49650023 + 3 NA intron (NR_136623, intron 2 of 12) L1MCa|LINE|L1 -177750 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 456-26 chr1 246999040 246999316 + 3 NA intron (NR_037892, intron 3 of 5) intron (NR_037892, intron 3 of 5) 8879 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 418-236 chr6 55778962 55779176 + 3 NA intron (NM_001329754, intron 3 of 5) intron (NM_001329754, intron 3 of 5) 96521 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 577-100 chr2 184098161 184098412 + 3 NA Intergenic L1PBa|LINE|L1 -280689 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 661-52 chr2 185366952 185367210 + 3 NA Intergenic L1M3|LINE|L1 -200009 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 387-360 chr8 68172207 68172462 + 3 NA intron (NM_024870, intron 35 of 39) intron (NM_024870, intron 35 of 39) -158039 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 798-4 chr1 217186978 217187502 + 3 NA Intergenic Intergenic -49538 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 497-15 chr10 9998266 9998588 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -60295 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 425-65 chr12 5355432 5355597 + 3 NA Intergenic L1MB7|LINE|L1 -76594 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 643-89 chr4 96292364 96292688 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -18177 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 569-81 chr19 37718950 37719172 + 3 NA 5' UTR (NM_001172677, exon 1 of 5) 5' UTR (NM_001172677, exon 1 of 5) 127 NM_001172677 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 551-75 chr18 67743222 67743561 + 3 NA intron (NR_033921, intron 1 of 4) L1PA10|LINE|L1 71431 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 471-9 chr1 90882968 90883165 + 3 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 31307 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 687-50 chr17 30240182 30240559 + 3 NA Intergenic LTR2C|LTR|ERV1 -4673 NM_001045 6532 Hs.29792 NM_001045 ENSG00000108576 SLC6A4 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT solute carrier family 6 member 4 protein-coding 412-101 chr15 63653647 63653917 + 3 NA intron (NM_003922, intron 51 of 77) MER2|DNA|TcMar-Tigger -52955 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 498-258 chr7 108100355 108100661 + 3 NA intron (NM_001318048, intron 10 of 17) intron (NM_001318048, intron 10 of 17) 29853 NM_007356 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 484-157 chr20 60851607 60851893 + 3 NA Intergenic Intergenic -227314 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 916-15 chr2 143908886 143909487 + 3 NA Intergenic MER50|LTR|ERV1 -27881 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 424-15 chr1 202748581 202748814 + 3 NA intron (NM_001314042, intron 15 of 27) AluJo|SINE|Alu -38243 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 511-263 chr8 107369062 107369278 + 3 NA intron (NM_001199859, intron 1 of 8) Tigger1|DNA|TcMar-Tigger -32655 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 520-67 chr12 37739418 37739723 + 3 NA Intergenic ALR/Alpha|Satellite|centr -577204 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 503-293 chr8 131270208 131270527 + 3 NA Intergenic Intergenic -229458 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 557-211 chr8 144921842 144922096 + 3 NA Intergenic Intergenic -19792 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 558-148 chr4 7551552 7551907 + 3 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) 91701 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 332-569 chr9 81184372 81184521 + 3 NA Intergenic Intergenic 505089 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 699-59 chr20 10011969 10012334 + 3 NA Intergenic L1MB7|LINE|L1 -22836 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 478-273 chr7 81293376 81293596 + 3 NA Intergenic Intergenic 268333 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 673-113 chr7 119166047 119166437 + 3 NA Intergenic L1MA4A|LINE|L1 741133 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 868-21 chr2 136629561 136630049 + 3 NA Intergenic Intergenic -135740 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 526-255 chr8 141544539 141544780 + 3 NA Intergenic Intergenic -37429 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 511-286 chrX 42401781 42402102 + 3 NA Intergenic Intergenic 376222 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 955-11 chr20 59659035 59659709 + 3 NA intron (NM_001281507, intron 1 of 12) AluSc|SINE|Alu -17289 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 736-48 chr21 24231428 24231764 + 3 NA Intergenic L1MC3|LINE|L1 89781 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 744-61 chr6 72014934 72015414 + 3 NA intron (NM_001350411, intron 2 of 3) Tigger4b|DNA|TcMar-Tigger 128471 NM_001350412 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 678-62 chr21 32520911 32521315 + 3 NA Intergenic Intergenic 64410 NM_144659 140290 Hs.728804 NM_018277 ENSG00000242220 TCP10L C21orf77|PRED77|TCP10A-1|TCP10A-2 t-complex 10 like protein-coding 530-201 chr5 71849062 71849369 + 3 NA Intergenic L1MEc|LINE|L1 129940 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 364-387 chr6 103065523 103065734 + 3 NA Intergenic L1MA4|LINE|L1 1666643 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 365-117 chr14 38854433 38854661 + 3 NA intron (NR_039982, intron 2 of 4) intron (NR_039982, intron 2 of 4) -28049 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 429-136 chr19 52250323 52250511 + 3 NA Intergenic MLT2B1|LTR|ERVL -19170 NM_001010851 90321 Hs.439662 NM_001010851 ENSG00000196214 ZNF766 - zinc finger protein 766 protein-coding 640-22 chr11 37782867 37783275 + 3 NA Intergenic L1PA11|LINE|L1 -155530 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 425-187 chr3 97204048 97204240 + 3 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -235463 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 478-116 chr17 49378926 49379199 + 3 NA intron (NR_110883, intron 4 of 4) intron (NR_110883, intron 4 of 4) -16589 NM_014897 22834 Hs.463375 NM_014897 ENSG00000198740 ZNF652 - zinc finger protein 652 protein-coding 729-13 chr11 3366254 3366608 + 3 NA intron (NR_046381, intron 4 of 6) L1M4c|LINE|L1 12715 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 701-7 chr10 7353139 7353464 + 3 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 56040 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 303-197 chr2 22133142 22133316 + 3 NA Intergenic Intergenic -403250 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 734 chr1 92024573 92025023 + 3 NA Intergenic L1ME4a|LINE|L1 -5187 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 428-310 chr8 135212044 135212340 + 3 NA Intergenic LTR16E2|LTR|ERVL -21939 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 629-47 chr16 8431329 8431725 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 158311 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 157-85 chr3 194829238 194829319 + 3 NA Intergenic Intergenic -60569 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 565-33 chr12 37768636 37769000 + 3 NA Intergenic ALR/Alpha|Satellite|centr -547956 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 932-9 chr2 115270856 115271501 + 3 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -38059 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 830-5 chr10 43481364 43481802 + 3 NA exon (NM_001355445, exon 4 of 4) exon (NM_001355445, exon 4 of 4) 44472 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 373-16 chr1 88240456 88240607 + 3 NA Intergenic Intergenic -443613 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 777-42 chr22 44029132 44029519 + 3 NA intron (NM_001243386, intron 1 of 11) L1MC1|LINE|L1 3021 NM_001243386 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 810-30 chr20 54045698 54046100 + 3 NA intron (NM_001366297, intron 3 of 8) MER57F|LTR|ERV1 13121 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 570-205 chr8 140051634 140051929 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 48754 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 448-219 chr5 110222511 110222674 + 3 NA Intergenic L1M2c|LINE|L1 291323 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 603-63 chr17 53701305 53701675 + 3 NA Intergenic MIRb|SINE|MIR -121437 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 370-319 chr3 139295312 139295458 + 3 NA Intergenic Intergenic -48609 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22 mitochondrial ribosomal protein S22 protein-coding 1092-9 chr16 49254320 49255044 + 3 NA Intergenic Intergenic 27156 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 402-4 chr1 30500807 30500985 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -217876 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 406-225 chr5 29828163 29828385 + 3 NA Intergenic L1M4c|LINE|L1 -52286 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 826-45 chr3 120542354 120542877 + 3 NA Intergenic L1PB2|LINE|L1 -53721 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 303-310 chr4 42624820 42624965 + 3 NA intron (NM_001105529, intron 3 of 35) L1ME4a|LINE|L1 32213 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 483-195 chr5 6316436 6316618 + 3 NA intron (NR_028351, intron 1 of 1) intron (NR_028351, intron 1 of 1) 20765 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 355-521 chr8 138403425 138403701 + 3 NA intron (NM_001362965, intron 1 of 19) MIRb|SINE|MIR 93698 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 649-24 chr14 59527762 59528175 + 3 NA intron (NM_001164399, intron 14 of 19) HAL1|LINE|L1 43451 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 533-249 chr9 87358500 87358818 + 3 NA Intergenic L1MA3|LINE|L1 -138569 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 346-290 chr22 28490957 28491186 + 3 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 31202 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 271-457 chr8 123674881 123674981 + 3 NA Intergenic Intergenic -21130 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 565-87 chr2 137045211 137045459 + 3 NA intron (NM_001316349, intron 2 of 27) Tigger7|DNA|TcMar-Tigger 279790 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 362-270 chr3 69664676 69664845 + 3 NA Intergenic Intergenic -74704 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 319-262 chr2 143362041 143362182 + 3 NA intron (NM_018460, intron 6 of 13) L2c|LINE|L2 232692 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 498-118 chr2 38972433 38972826 + 3 NA intron (NM_001367623, intron 16 of 16) intron (NM_001367623, intron 16 of 16) -12285 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 274-60 chr11 8525011 8525135 + 3 NA intron (NM_001352388, intron 1 of 14) L1ME3B|LINE|L1 68903 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 445-190 chr4 33610576 33610851 + 3 NA Intergenic L1PA13|LINE|L1 429180 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 526-72 chr14 34708392 34708722 + 3 NA TTS (NM_138638) TTS (NM_138638) 5260 NM_021914 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 569-17 chr1 227696368 227696614 + 3 NA TTS (NR_036753) TTS (NR_036753) 1216 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 706-14 chr12 1462232 1462703 + 3 NA intron (NR_027948, intron 19 of 19) L1ME2|LINE|L1 -38024 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 529-162 chr4 91824595 91824916 + 3 NA Intergenic L1MB1|LINE|L1 452547 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 404-116 chr16 21124138 21124391 + 3 NA intron (NM_001347886, intron 10 of 61) intron (NM_001347886, intron 10 of 61) 26582 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 458-100 chr17 58864053 58864222 + 3 NA intron (NM_014906, intron 1 of 6) FLAM_C|SINE|Alu 108268 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 333-548 chr7 90543406 90543552 + 3 NA Intergenic Intergenic -52842 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 544-118 chr2 88023110 88023404 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger 32526 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 607-34 chr13 47518617 47518937 + 3 NA Intergenic L1ME4a|LINE|L1 413845 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 828-56 chrX 74115350 74115774 + 3 NA intron (NR_028379, intron 5 of 6) L1MC4|LINE|L1 102899 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 513-273 chr8 41189911 41190197 + 3 NA Intergenic Intergenic 81089 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 337-537 chr8 83254569 83254770 + 3 NA Intergenic Intergenic -149089 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 858-34 chr4 146038202 146038550 + 3 NA Intergenic Intergenic 83537 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 630-8 chr10 52664687 52665085 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 90518 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 501-36 chr11 55775039 55775317 + 3 NA TTS (NM_001001967) TTS (NM_001001967) 1740 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 303-469 chr8 125264171 125264329 + 3 NA intron (NM_001349486, intron 5 of 7) Charlie16a|DNA|hAT-Charlie -166108 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 744-14 chr11 109259358 109259760 + 3 NA Intergenic L1MA10|LINE|L1 -162631 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 344-133 chr14 51903588 51903775 + 3 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 14890 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 493-255 chr6 35544299 35544512 + 3 NA Intergenic Intergenic -31509 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 562-193 chr6 125727882 125728186 + 3 NA Intergenic Intergenic -21598 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 467-130 chr2 45506101 45506379 + 3 NA intron (NM_018079, intron 14 of 20) intron (NM_018079, intron 14 of 20) 105027 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 292-190 chr19 7181378 7181514 + 3 NA intron (NM_001079817, intron 3 of 20) intron (NM_001079817, intron 3 of 20) 111743 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 384-55 chr11 31869560 31869775 + 3 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) 43100 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 502-238 chr6 167159398 167159699 + 3 NA Intergenic MIR|SINE|MIR -1717 NM_005299 2853 Hs.248124 NM_005299 ENSG00000120436 GPR31 12-HETER|HETER|HETER1 G protein-coupled receptor 31 protein-coding 612-79 chr20 62772934 62773246 + 3 NA Intergenic Intergenic 3766 NR_046225 100652730 Hs.254951 NR_046224 LINC00659 - long intergenic non-protein coding RNA 659 ncRNA 826-3 chr1 109964580 109965022 + 3 NA Intergenic L1MC1|LINE|L1 -19964 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 1182-4 chr12 34509400 34509916 + 3 NA Intergenic ALR/Alpha|Satellite|centr 487162 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 500-306 chr8 124102251 124102523 + 3 NA intron (NM_001039112, intron 38 of 40) L1ME4a|LINE|L1 -61605 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 459-320 chr8 139543059 139543279 + 3 NA Intergenic L1MA7|LINE|L1 159954 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 815-36 chr6 5641669 5642105 + 3 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) 53385 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 656-101 chr5 172258299 172258664 + 3 NA intron (NM_152277, intron 1 of 2) L1PA15|LINE|L1 25283 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 426-128 chr2 34994387 34994585 + 3 NA Intergenic UCON7|DNA?|DNA? 316929 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 348-488 chr7 25808706 25808907 + 3 NA Intergenic Intergenic -18687 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 118-4 chr1 219312793 219312874 + 3 NA Intergenic Intergenic 137864 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 699-54 chr2 147190860 147191230 + 3 NA Intergenic L1MB2|LINE|L1 603988 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 473-270 chr8 79838299 79838516 + 3 NA intron (NR_110954, intron 2 of 5) L1MC1|LINE|L1 33330 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 660-4 chr1 101040305 101040694 + 3 NA intron (NR_109849, intron 1 of 4) MSTA-int|LTR|ERVL-MaLR 14653 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 571-144 chr5 162297868 162298129 + 3 NA Intergenic L1PA15|LINE|L1 230356 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 540-222 chr9 29088706 29088903 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 123495 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 415-133 chr2 124697892 124698049 + 3 NA intron (NM_130773, intron 13 of 23) MIR|SINE|MIR 672683 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 429-155 chr2 89827104 89827371 + 3 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -189330 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 804-23 chr16 17043629 17043933 + 3 NA Intergenic L1PA13|LINE|L1 -90723 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 277-185 chr2 42468473 42468592 + 3 NA intron (NM_172344, intron 1 of 1) L1M5|LINE|L1 25450 NM_133329 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 698-7 chr1 176648440 176648786 + 3 NA intron (NM_021936, intron 3 of 4) L1MA3|LINE|L1 185438 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 694-124 chr7 78951755 78952126 + 3 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -57048 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 161-106 chr7 71922414 71922493 + 3 NA intron (NM_001363460, intron 4 of 5) (TA)n|Simple_repeat|Simple_repeat 414938 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 459-251 chr5 166811203 166811457 + 3 NA Intergenic AluY|SINE|Alu 115040 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 434-52 chr11 100160577 100160842 + 3 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -526579 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 360-382 chr5 141197315 141197514 + 3 NA Intergenic HAL1|LINE|L1 -2213 NM_018931 56125 Hs.283084 NM_018931 ENSG00000197479 PCDHB11 ME2|PCDH-BETA11 protocadherin beta 11 protein-coding 511-115 chr2 50100710 50100974 + 3 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -126639 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 310-556 chr9 93640855 93640996 + 3 NA intron (NM_005392, intron 3 of 21) L1MCb|LINE|L1 46084 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 453-64 chr14 31566240 31566570 + 3 NA intron (NR_120408, intron 3 of 9) HAL1ME|LINE|L1 5001 NM_025152 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 993-10 chr18 6040096 6040698 + 3 NA intron (NM_001365767, intron 16 of 16) MER20|DNA|hAT-Charlie -144443 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 724-69 chr5 45011070 45011507 + 3 NA Intergenic L1MA9|LINE|L1 202341 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 643-4 chr1 107449628 107449942 + 3 NA intron (NM_001113226, intron 6 of 6) intron (NM_001113226, intron 6 of 6) 238714 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 547-143 chr3 110518890 110519133 + 3 NA Intergenic Intergenic 550948 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 771-63 chr4 119946679 119946962 + 3 NA intron (NR_121639, intron 1 of 1) intron (NR_121639, intron 1 of 1) 7280 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 240-263 chr21 19926134 19926260 + 3 NA Intergenic Intergenic -26442 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 474-204 chr4 43823170 43823381 + 3 NA Intergenic AluJb|SINE|Alu -193586 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 614-60 chr2 159533662 159533919 + 3 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -81504 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 500-164 chr20 20560745 20560993 + 3 NA intron (NM_020343, intron 23 of 39) intron (NM_020343, intron 23 of 39) 151775 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 390-9 chr1 91240106 91240330 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity 164619 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 351-477 chr8 60023161 60023338 + 3 NA Intergenic Intergenic 258151 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 451-176 chr5 67999495 67999684 + 3 NA Intergenic Intergenic -190287 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 835-35 chr20 11330008 11330477 + 3 NA Intergenic Intergenic -56859 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 402-46 chr11 42715000 42715212 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -461416 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 632-125 chr8 137472501 137472910 + 3 NA Intergenic Intergenic -59117 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 531-87 chr17 82652050 82652253 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -3707 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 343-173 chr16 8692701 8692839 + 3 NA intron (NM_020686, intron 1 of 15) intron (NM_020686, intron 1 of 15) 18153 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 417-319 chrX 124982379 124982523 + 3 NA Intergenic Intergenic -18634 NM_001163279 10178 Hs.23796 NM_014253 ENSG00000009694 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1|ten-1 teneurin transmembrane protein 1 protein-coding 433-309 chrX 49793304 49793474 + 3 NA Intergenic Intergenic -35871 NM_001318877 9506 Hs.441038 NM_007003 ENSG00000101951 PAGE4 CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4 PAGE family member 4 protein-coding 701-72 chr5 4206762 4207056 + 3 NA Intergenic Intergenic -566572 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 1174 chr11 97715305 97716189 + 3 NA Intergenic Intergenic 1207322 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 447-62 chr13 33981450 33981641 + 3 NA Intergenic L1M5|LINE|L1 163396 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 446-296 chr8 48480961 48481262 + 3 NA Intergenic L1MB7|LINE|L1 -70456 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 592-126 chr4 83176911 83177317 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -62385 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 737-74 chr6 80388255 80388584 + 3 NA Intergenic HERVL-int|LTR|ERVL 281748 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 463-123 chr19 31848371 31848612 + 3 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -177371 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 478-315 chrX 41644072 41644286 + 3 NA intron (NM_003688, intron 8 of 26) L1PA5|LINE|L1 -44794 NM_005300 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 526-85 chr15 93684450 93684780 + 3 NA Intergenic L1PA16|LINE|L1 -171945 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 470-38 chr11 93363558 93363873 + 3 NA intron (NM_181645, intron 4 of 13) intron (NM_181645, intron 4 of 13) 32998 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 518-146 chr2 150301816 150302119 + 3 NA Intergenic L1ME3|LINE|L1 -44960 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 572-131 chr4 139895271 139895656 + 3 NA intron (NM_018717, intron 1 of 4) MIRb|SINE|MIR 229644 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 434-251 chr6 119887388 119887596 + 3 NA Intergenic Intergenic -127687 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 534-8 chr1 99435569 99435877 + 3 NA Intergenic Intergenic 52081 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 434-296 chr8 128400582 128400778 + 3 NA Intergenic Intergenic 163999 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 516-267 chr9 28017240 28017554 + 3 NA intron (NM_152570, intron 5 of 6) L1PA15|LINE|L1 -443531 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 640-94 chr4 69588743 69589086 + 3 NA 3' UTR (NM_006798, exon 7 of 7) 3' UTR (NM_006798, exon 7 of 7) 50728 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 368-45 chr10 29275296 29275499 + 3 NA Intergenic Intergenic -13673 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 585-55 chr17 33023472 33023867 + 3 NA intron (NM_183377, intron 6 of 9) L2c|LINE|L2 30818 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 175-159 chr8 30825895 30825963 + 3 NA Intergenic L1ME1|LINE|L1 -13111 NM_001009552 5516 Hs.491440 NM_004156 ENSG00000104695 PPP2CB PP2Abeta|PP2CB protein phosphatase 2 catalytic subunit beta protein-coding 947-22 chr4 114112067 114112523 + 3 NA Intergenic MER4A1|LTR|ERV1 -132648 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 513-279 chr8 76751996 76752273 + 3 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -68859 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 527-101 chr16 8465797 8466137 + 3 NA Intergenic Intergenic 123871 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 446-50 chr10 86258728 86258979 + 3 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 5935 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 455-205 chr5 2364956 2365227 + 3 NA Intergenic Intergenic -52890 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 895-8 chr13 80554030 80554551 + 3 NA Intergenic Intergenic -213164 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 341-181 chr16 21285554 21285707 + 3 NA intron (NM_001888, intron 1 of 9).2 LTR49-int|LTR|ERV1 -15219 NR_026675 400508 Hs.578949 NM_001101368 CRYM-AS1 NCRNA00169 CRYM antisense RNA 1 ncRNA 349-247 chr2 31830109 31830269 + 3 NA Intergenic L1M4|LINE|L1 -26209 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 491-205 chr5 33142256 33142545 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -87335 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 482-198 chr5 35893783 35894025 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR 37013 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 435-119 chr2 49531709 49531866 + 3 NA Intergenic L1M4|LINE|L1 -377260 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 307-155 chr15 36124929 36125077 + 3 NA Intergenic Intergenic 198147 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 654-81 chr3 68230299 68230628 + 3 NA intron (NM_001252216, intron 2 of 4) L1MA4|LINE|L1 226216 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 564-30 chr11 27295007 27295266 + 3 NA Intergenic Intergenic 68079 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 495-262 chr8 128952890 128953094 + 3 NA non-coding (NR_145483, exon 4 of 4) non-coding (NR_145483, exon 4 of 4) 13009 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 417-216 chr5 42523277 42523464 + 3 NA intron (NM_001242400, intron 2 of 10) Tigger1|DNA|TcMar-Tigger -24673 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 457-90 chr17 52365252 52365580 + 3 NA Intergenic Intergenic -25106 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 208-172 chr3 115193188 115193291 + 3 NA Intergenic Intergenic -45951 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 194-29 chr11 82380557 82380684 + 3 NA intron (NR_120571, intron 1 of 7) (TA)n|Simple_repeat|Simple_repeat 23293 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 560-6 chr1 111558906 111559296 + 3 NA intron (NM_001370216, intron 1 of 7) L1MEd|LINE|L1 4902 NM_001081976 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 312-116 chr12 124066769 124066901 + 3 NA intron (NM_001347902, intron 2 of 4) AluSq2|SINE|Alu 93620 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 283-444 chr8 122124363 122124519 + 3 NA Intergenic MER74B|LTR|ERVL 444203 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 584-76 chr2 80384265 80384722 + 3 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 71114 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 269-135 chr15 62331388 62331502 + 3 NA Intergenic Intergenic -11584 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 671-6 chr1 110258684 110259179 + 3 NA Intergenic Intergenic 48617 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 297-51 chr10 54969157 54969280 + 3 NA intron (NM_001354404, intron 3 of 34) L1MEc|LINE|L1 -167927 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 400-305 chr6 47036428 47036609 + 3 NA intron (NM_153840, intron 1 of 14) intron (NM_153840, intron 1 of 14) 5814 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 521-114 chr19 52175124 52175298 + 3 NA Intergenic AluSz|SINE|Alu -3590 NM_001102657 162962 Hs.631584 NM_001102657 ENSG00000196267 ZNF836 - zinc finger protein 836 protein-coding 631-71 chr2 115103941 115104165 + 3 NA intron (NM_001178037, intron 1 of 25) Tigger4b|DNA|TcMar-Tigger 39480 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 699-82 chr5 82878858 82879276 + 3 NA Intergenic L1MA4A|LINE|L1 -19231 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 500-313 chr8 138388800 138388985 + 3 NA intron (NM_001362965, intron 1 of 19) L1MC1|LINE|L1 108369 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 378-250 chr2 195286744 195286963 + 3 NA Intergenic Intergenic -370105 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 732-85 chr7 34743630 34744165 + 3 NA intron (NR_015356, intron 2 of 4) L1M5|LINE|L1 14375 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 466-30 chr10 75564570 75564788 + 3 NA intron (NM_001305581, intron 2 of 6) L1PA3|LINE|L1 12221 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 705-33 chr15 70237866 70238336 + 3 NA Intergenic L2c|LINE|L2 -140184 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 447-169 chr3 55221568 55221798 + 3 NA Intergenic L1MA7|LINE|L1 43511 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 595-31 chr11 78626298 78626612 + 3 NA Intergenic L1M1|LINE|L1 -51591 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 691-8 chr10 59442286 59442690 + 3 NA Intergenic L1M4c|LINE|L1 -79307 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 385-25 chr10 39298752 39298936 + 3 NA Intergenic ALR/Alpha|Satellite|centr 602248 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 482-93 chr16 78152876 78153185 + 3 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 53376 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 816-37 chr5 25774248 25774821 + 3 NA Intergenic L1MEc|LINE|L1 583581 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 503-71 chr12 58298488 58298743 + 3 NA Intergenic Intergenic 210723 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 517-14 chr1 179466676 179466869 + 3 NA intron (NM_144696, intron 16 of 25) L1MB8|LINE|L1 100728 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 416-330 chr8 54799878 54800110 + 3 NA Intergenic L1MCa|LINE|L1 183898 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 455-218 chr5 51872021 51872342 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -135850 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 314-423 chr4 58826088 58826246 + 3 NA Intergenic Intergenic -158115 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1193-10 chr8 139120321 139120963 + 3 NA Intergenic Intergenic -206601 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 636-111 chr5 45947949 45948228 + 3 NA Intergenic ALR/Alpha|Satellite|centr -251708 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 606-64 chr17 69444473 69444743 + 3 NA intron (NM_002758, intron 1 of 11) MLT1N2|LTR|ERVL-MaLR 29911 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 281-336 chr4 158505954 158506104 + 3 NA Intergenic L1MA10|LINE|L1 -15685 NM_001363776 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 1279-3 chr2 16357738 16358498 + 3 NA Intergenic L1PB1|LINE|L1 307691 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 338-566 chr8 135891978 135892148 + 3 NA Intergenic L1M4a1|LINE|L1 434607 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 377-198 chr2 42468131 42468323 + 3 NA intron (NM_172344, intron 1 of 1) L1M5|LINE|L1 25755 NM_133329 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 500-279 chr7 113963443 113963684 + 3 NA Intergenic Intergenic -44554 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 518-152 chr2 195026339 195026599 + 3 NA Intergenic Intergenic 295874 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 441-204 chr5 101243886 101244057 + 3 NA Intergenic L1MA7|LINE|L1 -340689 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 329-259 chr2 11918186 11918336 + 3 NA Intergenic MER77|LTR|ERVL -81275 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 564-23 chr10 125405981 125406241 + 3 NA Intergenic L1MA3|LINE|L1 -168260 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 323-247 chr2 63206005 63206194 + 3 NA intron (NR_148705, intron 13 of 16) L1MA2|LINE|L1 -86557 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 349-187 chr16 5707602 5707770 + 3 NA Intergenic MIRb|SINE|MIR 75219 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 350-402 chr5 87020948 87021091 + 3 NA Intergenic L1MEg|LINE|L1 93935 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 511-199 chr4 175819624 175819923 + 3 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) -6659 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 277-458 chrX 52283525 52283674 + 3 NA Intergenic Intergenic 53043 NR_107055 102466880 NR_107055 ENSG00000275335 MIR8088 hsa-mir-8088 microRNA 8088 ncRNA 755-69 chr8 16896557 16896841 + 3 NA Intergenic Intergenic 105646 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 603-151 chr7 28660420 28660910 + 3 NA intron (NM_182899, intron 4 of 9) MER103C|DNA|hAT-Charlie -25468 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 518-11 chr1 188965352 188965578 + 3 NA Intergenic Intergenic 1510545 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 683-23 chr16 26519056 26519416 + 3 NA Intergenic Intergenic 493999 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 436-206 chr4 54748647 54748821 + 3 NA Intergenic LTR56|LTR|ERV1 90806 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 451-192 chr6 4308087 4308370 + 3 NA Intergenic MER97c|DNA|hAT-Tip100 -118199 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 572-112 chr3 118189527 118189752 + 3 NA Intergenic L1PA5|LINE|L1 -452129 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 507-267 chr8 135315157 135315420 + 3 NA Intergenic Intergenic 81157 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 376-315 chr5 29771940 29772108 + 3 NA Intergenic Intergenic -108536 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 288-174 chr2 6642324 6642437 + 3 NA Intergenic Intergenic -7674 NR_110498 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 477-285 chr8 109685843 109686146 + 3 NA intron (NM_001099743, intron 1 of 7) intron (NM_001099743, intron 1 of 7) -4989 NM_001099746 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 436-102 chr16 66404490 66404708 + 3 NA 3' UTR (NM_001795, exon 12 of 12) 3' UTR (NM_001795, exon 12 of 12) -3925 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 440-179 chr4 31404227 31404414 + 3 NA Intergenic Intergenic -102224 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 584-75 chr2 78819206 78819481 + 3 NA Intergenic Intergenic -206359 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 443-154 chr2 148848065 148848286 + 3 NA Intergenic L1PA16|LINE|L1 -27052 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 1932-3 chr5 32662506 32663544 + 3 NA Intergenic MER52-int|LTR|ERV1 -27847 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 372-144 chr14 62595524 62595667 + 3 NA Intergenic MER3|DNA|hAT-Charlie 449863 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 402-356 chr8 133969971 133970255 + 3 NA Intergenic L1MEj|LINE|L1 83617 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 615-32 chr14 49261993 49262314 + 3 NA Intergenic Intergenic 324227 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 342-246 chr2 118347458 118347640 + 3 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -161163 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 547-51 chr12 48417411 48417732 + 3 NA Intergenic Intergenic -55094 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 421-160 chr2 234383080 234383289 + 3 NA Intergenic MIR|SINE|MIR 71411 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 651-85 chr3 167809834 167810353 + 3 NA intron (NM_001122752, intron 6 of 8) intron (NM_001122752, intron 6 of 8) 74370 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 459-82 chr14 62825196 62825433 + 3 NA intron (NM_139318, intron 8 of 10) L1PA16|LINE|L1 220144 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 469-14 chr1 147313170 147313390 + 3 NA Intergenic L1ME4b|LINE|L1 70138 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 384-412 chrX 67199509 67199735 + 3 NA Intergenic Intergenic -344399 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 485-206 chr4 71710080 71710333 + 3 NA Intergenic L1MD2|LINE|L1 73873 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 553-171 chr4 42911665 42911989 + 3 NA intron (NM_001080476, intron 1 of 3) MIR|SINE|MIR 18561 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 687-45 chr16 59922412 59922779 + 3 NA intron (NR_110917, intron 1 of 3) L2a|LINE|L2 67242 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 911-3 chr10 43615842 43616387 + 3 NA intron (NM_145312, intron 4 of 4) intron (NM_145312, intron 4 of 4) 9676 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 502-179 chr3 84799786 84799995 + 3 NA intron (NR_033860, intron 8 of 20) MLT1E3|LTR|ERVL-MaLR 69685 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 527-252 chr7 87329011 87329329 + 3 NA intron (NR_015381, intron 2 of 2) LTR25-int|LTR|ERV1 16322 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 408-179 chr2 228007247 228007442 + 3 NA intron (NM_030623, intron 7 of 10) L1MA7|LINE|L1 135713 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 442-8 chr1 58728834 58729022 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -28866 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 777-11 chr10 107159379 107159753 + 3 NA intron (NM_001206569, intron 1 of 25) MIRb|SINE|MIR 5140 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 818-10 chr11 70039220 70039690 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 24469 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 461-300 chrX 98795837 98796055 + 3 NA Intergenic Intergenic -1231411 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 254-230 chr21 25837228 25837370 + 3 NA Intergenic Intergenic -101645 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 500-210 chr4 88643829 88644165 + 3 NA intron (NM_001318505, intron 3 of 8) L1ME1|LINE|L1 51517 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 460-231 chr5 6887936 6888166 + 3 NA Intergenic Intergenic -60130 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 542-118 chr20 39981373 39981711 + 3 NA Intergenic Intergenic -22919 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 497-117 chr2 38653435 38653611 + 3 NA Intergenic MER21C|LTR|ERVL -12591 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 540-208 chr8 77947868 77948142 + 3 NA Intergenic Intergenic 497308 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 739-8 chr10 61022509 61022841 + 3 NA intron (NR_108052, intron 1 of 1) intron (NR_108052, intron 1 of 1) 6400 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 259-297 chr4 142026986 142027076 + 3 NA 3' UTR (NM_001101669, exon 26 of 26) 3' UTR (NM_001101669, exon 26 of 26) 390448 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 811-23 chr19 31520324 31520703 + 3 NA Intergenic L1ME1|LINE|L1 -67676 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 537-237 chr7 56711736 56712090 + 3 NA Intergenic AluSx1|SINE|Alu 100823 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 368 chr1 14181011 14181226 + 3 NA Intergenic Intergenic 238855 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 337-383 chr4 30223671 30223823 + 3 NA Intergenic Intergenic -496622 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 489-120 chr19 33899417 33899626 + 3 NA Intergenic L1MEg|LINE|L1 102651 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 545-212 chr6 152021842 152022112 + 3 NA intron (NM_001122741, intron 6 of 8) THE1B|LTR|ERVL-MaLR 146310 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 451-42 chr11 120021614 120021848 + 3 NA Intergenic Intergenic 107122 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 651-14 chr10 17583884 17584172 + 3 NA Intergenic Intergenic 33346 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 400-271 chr5 7608828 7609015 + 3 NA intron (NM_020546, intron 3 of 24) MamRep605|LTR?|LTR? 212783 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 625-91 chr5 153923792 153924094 + 3 NA Intergenic L1MA3|LINE|L1 -24956 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 463-246 chr6 2332998 2333206 + 3 NA intron (NR_046229, intron 4 of 6) L1MEd|LINE|L1 87349 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 353-10 chr1 50562641 50562821 + 3 NA intron (NM_007051, intron 13 of 18) L2c|LINE|L2 -139288 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 616-161 chr7 86005861 86006144 + 3 NA Intergenic L1MA5|LINE|L1 584880 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 470-74 chr14 61418703 61418925 + 3 NA intron (NM_006255, intron 2 of 13) AmnSINE1|SINE|5S-Deu-L2 97371 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 499-154 chr22 26684336 26684583 + 3 NA intron (NR_110543, intron 1 of 5) intron (NR_110543, intron 1 of 5) 11616 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 456-354 chrX 95009189 95009390 + 3 NA Intergenic L1MC1|LINE|L1 53937 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 619 chr1 16338483 16338758 + 3 NA intron (NM_018994, intron 1 of 9) intron (NM_018994, intron 1 of 9) 13860 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 486-40 chr10 120054702 120055019 + 3 NA Intergenic Intergenic 96347 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 563-97 chr2 214880339 214880757 + 3 NA intron (NR_110292, intron 2 of 3) MLT1F2-int|LTR|ERVL-MaLR 33601 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 851-32 chr3 35328882 35329211 + 3 NA intron (NR_110817, intron 1 of 3) THE1B|LTR|ERVL-MaLR 64977 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 490-87 chr14 62398730 62398942 + 3 NA Intergenic L1M1|LINE|L1 -258863 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 739-10 chr10 85369774 85370184 + 3 NA Intergenic L1MEd|LINE|L1 62793 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 475-265 chr7 61739396 61739697 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1564510 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 753-27 chr16 79497769 79498304 + 3 NA Intergenic Intergenic 102701 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 346-449 chr6 160507354 160507525 + 3 NA intron (NR_028092, intron 1 of 9) intron (NR_028092, intron 1 of 9) 3685 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 582-9 chr10 58718483 58718867 + 3 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 3660 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 178-79 chr21 21339295 21339389 + 3 NA intron (NM_001352592, intron 9 of 18) intron (NM_001352592, intron 9 of 18) 192180 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 626-140 chr8 105918067 105918366 + 3 NA intron (NR_125796, intron 2 of 7) THE1C-int|LTR|ERVL-MaLR 142287 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 173-92 chr3 98977285 98977390 + 3 NA Intergenic Intergenic -75642 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 474-293 chr8 121852619 121852861 + 3 NA Intergenic Intergenic -211300 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 619-56 chr16 17149531 17149797 + 3 NA intron (NM_022166, intron 6 of 11) intron (NM_022166, intron 6 of 11) 15160 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 477-143 chr2 22102230 22102511 + 3 NA Intergenic L1MEc|LINE|L1 -391718 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 858-24 chr2 56152856 56153428 + 3 NA Intergenic Intergenic -30848 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 706-51 chr4 102572587 102572953 + 3 NA intron (NM_003998, intron 6 of 23) L1MEc|LINE|L1 -70284 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 683-39 chr2 145548091 145548565 + 3 NA Intergenic Intergenic 880361 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 431-71 chr12 131208948 131209144 + 3 NA intron (NR_026670, intron 3 of 4) intron (NR_026670, intron 3 of 4) 44035 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 491-196 chr4 163835705 163835956 + 3 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -222296 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 456-288 chr6 151556792 151557097 + 3 NA intron (NM_025059, intron 5 of 10) L1MA4A|LINE|L1 62927 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 662-89 chr7 107253596 107253914 + 3 NA intron (NM_181733, intron 15 of 20) L2a|LINE|L2 84752 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 661-66 chr3 77571538 77571903 + 3 NA intron (NM_001290039, intron 14 of 26) intron (NM_001290039, intron 14 of 26) 473708 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 452-74 chr14 28022205 28022478 + 3 NA Intergenic Intergenic -349120 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 475-256 chr7 21037442 21037720 + 3 NA Intergenic L1PB1|LINE|L1 202150 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 702-17 chr12 3586735 3587173 + 3 NA intron (NM_019854, intron 8 of 9) intron (NM_019854, intron 8 of 9) -94135 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 858-31 chr21 33783538 33783907 + 3 NA intron (NM_001001132, intron 16 of 29) intron (NM_001001132, intron 16 of 29) 132082 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 1015-6 chr15 27762599 27763554 + 3 NA intron (NM_001300984, intron 22 of 22) L1MDa|LINE|L1 336239 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 470-184 chr3 157444461 157444640 + 3 NA TTS (NM_002852) TTS (NM_002852) 7700 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 495-180 chr4 75615933 75616182 + 3 NA intron (NM_003948, intron 2 of 11) intron (NM_003948, intron 2 of 11) 14471 NM_001330724 8999 Hs.591698 NM_003948 ENSG00000138769 CDKL2 KKIAMRE|P56 cyclin dependent kinase like 2 protein-coding 351-528 chrX 133008663 133008926 + 3 NA Intergenic Intergenic 19478 NM_031907 83844 Hs.333137 NM_031907 ENSG00000134588 USP26 - ubiquitin specific peptidase 26 protein-coding 784-42 chr3 195060846 195061343 + 3 NA Intergenic LTR16|LTR|ERVL -33494 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 725-23 chr14 47519758 47520221 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 154965 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 786-44 chr3 178428565 178429054 + 3 NA intron (NR_046786, intron 1 of 2) intron (NR_046786, intron 1 of 2) 9608 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 928 chr1 8974444 8974899 + 3 NA TTS (NM_001270500) TTS (NM_001270500) 28803 NM_001215 765 Hs.100322 NM_001215 ENSG00000131686 CA6 CA-VI|GUSTIN carbonic anhydrase 6 protein-coding 395-182 chr2 149840796 149840979 + 3 NA intron (NR_145421, intron 2 of 4) MER58B|DNA|hAT-Charlie 18304 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 1029-10 chr19 51595984 51596403 + 3 NA Intergenic Intergenic -1813 NR_034159 729975 Hs.716785 NR_034159 LINC01530 - long intergenic non-protein coding RNA 1530 ncRNA 573-65 chr14 72525894 72526308 + 3 NA intron (NM_001370288, intron 15 of 16) AluY|SINE|Alu 9281 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 572-55 chr14 68801148 68801501 + 3 NA Intergenic L1ME1|LINE|L1 -5081 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 673-95 chr5 23945480 23945844 + 3 NA Intergenic L1MC|LINE|L1 -5686 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 1076 chr1 90641583 90642036 + 3 NA Intergenic HAL1|LINE|L1 -15941 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 857-40 chr3 129697139 129697526 + 3 NA intron (NM_001349271, intron 2 of 4) THE1C-int|LTR|ERVL-MaLR -8600 NM_001349272 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 302-395 chr6 159413737 159413924 + 3 NA Intergenic Intergenic 30299 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 426-131 chr2 48751712 48751933 + 3 NA intron (NM_000233, intron 1 of 10) intron (NM_000233, intron 1 of 10) 3902 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 319-520 chr8 40464664 40464890 + 3 NA Intergenic Intergenic -121414 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 451-227 chr8 51466980 51467232 + 3 NA intron (NM_144651, intron 8 of 22) L1PA17|LINE|L1 342339 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 414-105 chr16 26836719 26836881 + 3 NA Intergenic L1MCa|LINE|L1 -230127 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 719-46 chr22 48781748 48782259 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 1708 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 276-85 chr11 79302444 79302577 + 3 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 99599 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 281-198 chr2 33061928 33062086 + 3 NA intron (NM_206943, intron 3 of 33) L1ME2z|LINE|L1 -72590 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 317-56 chr10 75284867 75285063 + 3 NA intron (NR_120651, intron 1 of 3) L2b|LINE|L2 -11418 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 378-204 chr19 37357967 37358137 + 3 NA intron (NR_138105, intron 7 of 7) L1PA17|LINE|L1 -13047 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 435-65 chr12 72165508 72165779 + 3 NA Intergenic Intergenic -107106 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 422-65 chr12 87745262 87745460 + 3 NA Intergenic Intergenic -23451 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 602-14 chr10 113215772 113216041 + 3 NA Intergenic L1ME4a|LINE|L1 86635 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 338-108 chr11 84627312 84627459 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 93557 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 673-60 chr2 98001382 98001846 + 3 NA Intergenic Intergenic -5666 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 428-159 chr20 51228794 51229058 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -205819 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 329-325 chr20 15740488 15740664 + 3 NA intron (NM_001351663, intron 8 of 17) L2a|LINE|L2 182738 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 338-339 chr3 73422806 73423020 + 3 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) 11082 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 387-270 chr5 22983275 22983500 + 3 NA Intergenic Intergenic -130043 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 416-76 chr11 96539780 96539972 + 3 NA Intergenic MIRb|SINE|MIR 31451 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 674-95 chr7 51946061 51946430 + 3 NA Intergenic Intergenic -552989 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 535-13 chr1 82281613 82281890 + 3 NA Intergenic Intergenic 479298 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 510-79 chr14 79010971 79011238 + 3 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -188878 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 413-189 chr3 76269478 76269648 + 3 NA Intergenic Intergenic -484014 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 397-340 chr8 101481013 101481231 + 3 NA Intergenic Intergenic -11317 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 811-50 chr9 13647744 13648167 + 3 NA Intergenic Intergenic -216626 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 643-125 chr8 69152279 69152533 + 3 NA Intergenic Intergenic -48216 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 468-165 chr2 164386137 164386327 + 3 NA Intergenic Intergenic 182263 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 239-104 chr14 64849432 64849565 + 3 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) -26118 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 786-35 chr20 43789832 43790285 + 3 NA Intergenic L1M4|LINE|L1 -63056 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 899-36 chr8 142423153 142423659 + 3 NA Intergenic FLAM_C|SINE|Alu -20224 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 1223-12 chr5 46296440 46297006 + 3 NA Intergenic ALR/Alpha|Satellite|centr -600343 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 411-48 chr10 131294676 131294896 + 3 NA intron (NM_174937, intron 3 of 11) L1MC5|LINE|L1 16935 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 720-71 chr5 132137843 132138395 + 3 NA Intergenic L1MEc|LINE|L1 -46757 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 442-91 chr15 46851975 46852255 + 3 NA Intergenic Intergenic -331974 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 547-249 chr8 127363488 127363882 + 3 NA intron (NR_117099, intron 3 of 3) MIRb|SINE|MIR -36714 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 500-166 chr20 39956317 39956629 + 3 NA Intergenic Intergenic -47988 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 490-212 chr5 5049198 5049434 + 3 NA intron (NR_026994, intron 2 of 6) MER33|DNA|hAT-Charlie 14957 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 887-31 chr8 107452432 107453008 + 3 NA intron (NM_001199859, intron 1 of 8) MIRb|SINE|MIR 45198 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 459-240 chr5 97389971 97390175 + 3 NA Intergenic L1MC3|LINE|L1 -114623 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 537-227 chr7 9147827 9148133 + 3 NA Intergenic Intergenic -486290 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 824-14 chr17 69994545 69994833 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 32982 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 703-99 chr8 134989533 134989900 + 3 NA Intergenic Intergenic 139781 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 791-74 chrUn_KI270757v1 60923 61545 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 1634 chr1 181959801 181960644 + 3 NA Intergenic L1PA7|LINE|L1 101490 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 283-148 chr15 60275011 60275155 + 3 NA Intergenic Intergenic 122903 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 946-4 chr12 39227578 39227976 + 3 NA Intergenic Intergenic 215343 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 464-184 chr4 90886630 90886915 + 3 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 651741 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 693-94 chr7 36861408 36861783 + 3 NA intron (NM_001206480, intron 21 of 21) intron (NM_001206480, intron 21 of 21) 57837 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 1589-4 chr14 68099092 68100185 + 3 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 276046 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 436-53 chr11 90797805 90798001 + 3 NA intron (NR_104190, intron 3 of 6) L2c|LINE|L2 71299 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 422-322 chrX 142831009 142831318 + 3 NA Intergenic Intergenic -194765 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 476-288 chrX 85687449 85687757 + 3 NA Intergenic MLT2B4|LTR|ERVL -148177 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 505-67 chr12 118808369 118808643 + 3 NA Intergenic L1MA1|LINE|L1 25030 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 563-52 chr14 62308684 62309105 + 3 NA Intergenic Intergenic -168921 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 805-18 chr18 7499826 7500245 + 3 NA Intergenic Intergenic -39029 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 499-251 chr7 109835808 109836127 + 3 NA Intergenic Intergenic 124246 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 458-74 chr14 62347531 62347723 + 3 NA Intergenic Intergenic -207654 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 550-33 chr10 64800404 64800722 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -24965 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 569-92 chr2 59480095 59480301 + 3 NA Intergenic L1MA8|LINE|L1 262490 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 471-269 chr8 115399852 115400070 + 3 NA Intergenic Intergenic 268052 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 444-4 chr1 43108533 43108834 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -39221 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 561-59 chr13 86048139 86048411 + 3 NA Intergenic Intergenic -248856 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 796-35 chr3 102037437 102037842 + 3 NA Intergenic Intergenic 96780 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 809-50 chr8 83077725 83078133 + 3 NA Intergenic Intergenic 165825 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 360-124 chr14 66197446 66197615 + 3 NA Intergenic Intergenic -288841 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 646-83 chr3 6229340 6229778 + 3 NA Intergenic MIRb|SINE|MIR 575890 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 536-119 chr2 66013210 66013413 + 3 NA Intergenic Intergenic 345017 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 264-204 chr2 81662223 81662344 + 3 NA Intergenic Intergenic -195337 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 414-265 chr5 41054387 41054592 + 3 NA intron (NM_173489, intron 11 of 41) intron (NM_173489, intron 11 of 41) 16853 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 502-91 chr14 76014468 76014731 + 3 NA intron (NM_001102564, intron 2 of 8) intron (NM_001102564, intron 2 of 8) 28836 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 606-131 chr5 68804661 68804983 + 3 NA Intergenic L1MEd|LINE|L1 225105 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 716-27 chr15 95065972 95066381 + 3 NA Intergenic L1MA6|LINE|L1 210813 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 707-11 chr10 16269062 16269420 + 3 NA Intergenic L1M4|LINE|L1 -167702 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 519-49 chr12 59676900 59677243 + 3 NA intron (NM_001270622, intron 2 of 5) intron (NM_001270622, intron 2 of 5) -12299 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 526-111 chr19 37698785 37698969 + 3 NA exon (NM_032689, exon 5 of 5) exon (NM_032689, exon 5 of 5) -6562 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 428-149 chr20 6249701 6249914 + 3 NA Intergenic MER74A|LTR|ERVL -126263 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 420-183 chr3 54182231 54182458 + 3 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 59792 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 292-159 chr16 10406892 10407049 + 3 NA intron (NM_024997, intron 1 of 11) L1M2|LINE|L1 20909 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 484-286 chr9 95984141 95984474 + 3 NA intron (NM_020207, intron 17 of 18) (AT)n|Simple_repeat|Simple_repeat 37504 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 448-93 chr16 64758084 64758261 + 3 NA Intergenic Intergenic 363891 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 351-427 chr6 161893457 161893606 + 3 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 422554 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 546-97 chr19 36245788 36246042 + 3 NA promoter-TSS (NM_001366188) promoter-TSS (NM_001366188) 13 NM_001366188 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 546-205 chr6 21504653 21504866 + 3 NA intron (NR_103790, intron 1 of 3) intron (NR_103790, intron 1 of 3) 7133 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 424-106 chr17 73875553 73875747 + 3 NA Intergenic Intergenic -47113 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 371-160 chr2 28484256 28484536 + 3 NA Intergenic Intergenic -11664 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 524-268 chr8 123843271 123843639 + 3 NA Intergenic L1M3c|LINE|L1 -8532 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 690-67 chr21 21213830 21214100 + 3 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 66803 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 359-188 chr17 71267622 71267780 + 3 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -65522 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 656-53 chr2 59726785 59727191 + 3 NA Intergenic Intergenic 509280 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 581-106 chr3 187257701 187258105 + 3 NA intron (NR_033519, intron 3 of 9) MER49|LTR|ERV1 -33369 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 435-71 chr13 85876581 85876859 + 3 NA Intergenic Intergenic -77301 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 558-110 chr2 234760847 234761197 + 3 NA Intergenic L1M7|LINE|L1 78354 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 573-94 chr2 78790349 78790688 + 3 NA Intergenic Intergenic -235184 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 523-2 chr1 45859716 45859923 + 3 NA intron (NM_001324320, intron 3 of 29) intron (NM_001324320, intron 3 of 29) -4529 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 442-271 chr7 25960844 25961030 + 3 NA Intergenic Intergenic -10951 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 343-474 chr6 82049327 82049486 + 3 NA intron (NR_149135, intron 3 of 3) L1MC4|LINE|L1 52359 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 350-175 chr17 47339688 47339876 + 3 NA intron (NM_001195192, intron 5 of 21) GA-rich|Low_complexity|Low_complexity 15827 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 597-17 chr1 238297999 238298307 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 187864 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 271-455 chr8 120307309 120307493 + 3 NA intron (NM_021110, intron 36 of 47) Tigger3d|DNA|TcMar-Tigger 137749 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 565-37 chr13 64334976 64335175 + 3 NA Intergenic Intergenic -259064 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 948-39 chr9 103992762 103993278 + 3 NA Intergenic Intergenic -6689 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 447-296 chr9 108770757 108770936 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 85140 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 711-12 chr12 13113753 13114290 + 3 NA Intergenic (AGT)n|Simple_repeat|Simple_repeat -10354 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 373-3 chr1 14218069 14218294 + 3 NA Intergenic L1MC5|LINE|L1 201792 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 556-93 chr19 36614433 36614631 + 3 NA intron (NM_001256838, intron 4 of 4) L1ME2|LINE|L1 9219 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 268-399 chr8 85998916 85999049 + 3 NA Intergenic Intergenic 70686 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 314-459 chr5 50659768 50659960 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -6067 NM_001178055 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 512-227 chr5 122213864 122214152 + 3 NA Intergenic L1MB2|LINE|L1 53832 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 894-29 chr4 42311388 42311896 + 3 NA intron (NR_134668, intron 1 of 1) L2|LINE|L2 79626 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 417-302 chr9 32920439 32920641 + 3 NA Intergenic L1PA16|LINE|L1 81036 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 407-244 chr5 33109805 33110142 + 3 NA Intergenic L1M2c|LINE|L1 -119762 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 347-565 chrX 99400624 99400777 + 3 NA Intergenic (ACAT)n|Simple_repeat|Simple_repeat 1009573 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 349-3 chr1 9064011 9064243 + 3 NA intron (NM_003039, intron 1 of 11) intron (NM_003039, intron 1 of 11) 5508 NM_001135585 6518 Hs.530003 NM_003039 ENSG00000142583 SLC2A5 GLUT-5|GLUT5 solute carrier family 2 member 5 protein-coding 454-99 chr14 87106521 87106714 + 3 NA Intergenic Intergenic 200839 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 398-187 chr20 24167940 24168159 + 3 NA Intergenic L1ME3A|LINE|L1 -31718 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 436-76 chr13 78021937 78022140 + 3 NA intron (NR_047028, intron 2 of 5) intron (NR_047028, intron 2 of 5) 9155 NR_047028 100874175 Hs.130364 NR_047028 LINC00446 - long intergenic non-protein coding RNA 446 ncRNA 494-8 chr1 97700768 97700966 + 3 NA intron (NM_000110, intron 5 of 22) intron (NM_000110, intron 5 of 22) -96054 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 542-8 chr1 92455417 92455765 + 3 NA Intergenic L1M4|LINE|L1 28363 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 460-160 chr2 210592605 210592850 + 3 NA promoter-TSS (NR_163592) promoter-TSS (NR_163592) -628 NR_163592 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 432-104 chr17 60592568 60592763 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger -7518 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 393-315 chr6 140423122 140423306 + 3 NA Intergenic L1MA1|LINE|L1 217962 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 369-88 chr12 97429921 97430084 + 3 NA Intergenic Intergenic -32774 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 787-55 chr9 28982560 28982954 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -93802 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 263-410 chr8 29966109 29966203 + 3 NA Intergenic L1ME3D|LINE|L1 -8808 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 926-5 chr11 54824059 54824619 + 3 NA Intergenic ALR/Alpha|Satellite|centr 117507 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 280-127 chr14 84085294 84085412 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -1186579 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 584-157 chr6 139479230 139479563 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger -4800 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 357-427 chr8 25274465 25274620 + 3 NA intron (NM_024940, intron 3 of 51) intron (NM_024940, intron 3 of 51) -70860 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 828-38 chr5 88456416 88456903 + 3 NA Intergenic Intergenic -17569 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 309-70 chr11 10850035 10850250 + 3 NA Intergenic Intergenic 7911 NM_021211 58486 Hs.655066 NM_021211 ENSG00000236287 ZBED5 Buster1 zinc finger BED-type containing 5 protein-coding 1151-9 chr22 24903568 24904212 + 3 NA intron (NM_001098498, intron 19 of 23) AluSq2|SINE|Alu 42805 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 491-188 chr4 103179960 103180166 + 3 NA intron (NM_001813, intron 13 of 48) intron (NM_001813, intron 13 of 48) 18280 NM_001813 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 809-34 chr3 194832249 194832767 + 3 NA Intergenic Intergenic -63799 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 538-98 chr19 30199396 30199802 + 3 NA Intergenic Intergenic -172785 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 551-90 chr2 84130129 84130397 + 3 NA Intergenic Intergenic -160419 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 551-33 chr11 82038048 82038349 + 3 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -147362 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 487-89 chr14 72183760 72184060 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 250383 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 356-133 chr13 88522754 88522975 + 3 NA Intergenic Intergenic -17965 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 446-195 chr3 104980954 104981167 + 3 NA Intergenic L1MB7|LINE|L1 -385653 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 458-229 chr7 9917932 9918203 + 3 NA Intergenic Intergenic 283797 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 277-378 chr7 54652065 54652194 + 3 NA Intergenic Intergenic 95159 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 313-206 chr17 74587264 74587398 + 3 NA intron (NM_152460, intron 1 of 2) L1ME1|LINE|L1 2413 NM_152460 146723 Hs.350775 NM_152460 C17orf77 - chromosome 17 open reading frame 77 protein-coding 986-17 chr18 69594558 69595104 + 3 NA intron (NM_152721, intron 2 of 7) FLAM_C|SINE|Alu 124900 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 383-422 chrX 96020075 96020324 + 3 NA Intergenic L1MB1|LINE|L1 317703 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 321-286 chr2 73417316 73417509 + 3 NA intron (NM_015120, intron 2 of 22) intron (NM_015120, intron 2 of 22) 31654 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 380-412 chr8 135097210 135097426 + 3 NA Intergenic L1MDa|LINE|L1 -136813 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 727-13 chr11 30645525 30645946 + 3 NA Intergenic Intergenic -59382 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 260-367 chr6 24945273 24945433 + 3 NA intron (NM_001286446, intron 1 of 13) L1M4|LINE|L1 -9393 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 710-60 chr3 32528972 32529497 + 3 NA intron (NM_016141, intron 11 of 12) L1ME4c|LINE|L1 -22845 NR_106753 102465247 NR_106753 ENSG00000276147 MIR548AY hsa-mir-548ay microRNA 548ay ncRNA 517-129 chr2 62372840 62373045 + 3 NA Intergenic Intergenic 133253 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 334-330 chr3 6966647 6966814 + 3 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -72713 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 511-181 chr3 175669723 175669983 + 3 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 106480 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 458-182 chr4 43708736 43708908 + 3 NA Intergenic MamGypsy2-I|LTR|Gypsy -216279 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 323-422 chr5 89724576 89724695 + 3 NA Intergenic Intergenic 292085 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 609-59 chr2 114904101 114904398 + 3 NA intron (NM_001321910, intron 2 of 26) MLT1B-int|LTR|ERVL-MaLR -70701 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 712-13 chr10 43612677 43613057 + 3 NA intron (NM_145312, intron 4 of 4) L1ME4b|LINE|L1 6429 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 396-118 chr15 94707548 94707760 + 3 NA Intergenic MIR3|SINE|MIR -147709 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 417-249 chr6 146326020 146326275 + 3 NA intron (NM_001278065, intron 4 of 9) intron (NM_001278065, intron 4 of 9) -217686 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 439-106 chr17 48407964 48408127 + 3 NA intron (NM_001075099, intron 1 of 12) intron (NM_001075099, intron 1 of 12) 22169 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 358-490 chr8 116201649 116201802 + 3 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 123334 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 410-319 chr8 136136210 136136433 + 3 NA Intergenic Intergenic -394477 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 524-184 chr4 137924762 137924976 + 3 NA Intergenic Intergenic -164145 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 461-65 chr12 59175422 59175620 + 3 NA Intergenic Intergenic -254983 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 660-17 chr11 133514358 133514740 + 3 NA intron (NM_001012393, intron 1 of 7) MamGypsy2-I|LTR|Gypsy 17952 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 534-116 chr2 79652282 79652475 + 3 NA intron (NM_001282598, intron 2 of 17) MLT1D|LTR|ERVL-MaLR -3019 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 335-423 chr5 40204398 40204610 + 3 NA Intergenic Intergenic 152213 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 517-143 chr2 144177949 144178248 + 3 NA intron (NM_001284238, intron 5 of 13) L2b|LINE|L2 33481 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 545-9 chr1 111962350 111962629 + 3 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 26666 NM_172198 3752 Hs.666367 NM_004980 ENSG00000171385 KCND3 BRGDA9|KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22 potassium voltage-gated channel subfamily D member 3 protein-coding 271-329 chr4 184926720 184926817 + 3 NA Intergenic L1M4a2|LINE|L1 11672 NR_039660 100616111 NR_039660 ENSG00000263458 MIR4455 - microRNA 4455 ncRNA 497-26 chr10 91708429 91708704 + 3 NA Intergenic L1ME4a|LINE|L1 -75495 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 631-119 chr7 86227615 86227962 + 3 NA Intergenic MER76-int|LTR|ERVL -416121 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 883-5 chr12 10456902 10457391 + 3 NA Intergenic L1PA16|LINE|L1 -2461 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 198-35 chr11 26412351 26412430 + 3 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) -61512 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 301-2 chr1 30691610 30691758 + 3 NA Intergenic AluJo|SINE|Alu -27088 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 439-155 chr2 194145494 194145668 + 3 NA Intergenic L1PA13|LINE|L1 -198688 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 666-31 chr14 76893707 76894170 + 3 NA Intergenic Intergenic -65700 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 580-97 chr2 230132822 230133066 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -64020 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 279-402 chr7 115176700 115176824 + 3 NA intron (NR_126407, intron 1 of 4) L1ME1|LINE|L1 54593 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 694-8 chr1 221862680 221863143 + 3 NA Intergenic Intergenic -22245 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 1066-10 chr19 58162852 58163307 + 3 NA Intergenic Intergenic -12290 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 456-36 chr10 76472231 76472446 + 3 NA intron (NM_001305581, intron 6 of 6) L1MB8|LINE|L1 -415706 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 770-18 chr14 50571393 50571712 + 3 NA intron (NM_015915, intron 1 of 13) L1M5|LINE|L1 11527 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 603-69 chr18 9294304 9294706 + 3 NA Intergenic Intergenic -40268 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 432-281 chr8 18905076 18905252 + 3 NA intron (NM_015310, intron 2 of 15) intron (NM_015310, intron 2 of 15) -18107 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 365-366 chr7 6665719 6665941 + 3 NA Intergenic Intergenic 28512 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 1026-6 chr13 104388594 104389335 + 3 NA Intergenic L1ME4a|LINE|L1 963764 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 820-42 chr4 171456184 171456565 + 3 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat 182389 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 1274-5 chr7 62660932 62661668 + 3 NA Intergenic ALR/Alpha|Satellite|centr 642756 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 369-217 chr2 143119754 143119964 + 3 NA Intergenic L1PB1|LINE|L1 -9560 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 495-31 chr10 107789304 107789532 + 3 NA Intergenic (ATTTAC)n|Simple_repeat|Simple_repeat 279875 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 565-114 chr3 46764196 46764517 + 3 NA Intergenic L1M4|LINE|L1 -7501 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 496-166 chr21 44631234 44631530 + 3 NA intron (NM_144991, intron 1 of 11) L1MB5|LINE|L1 4289 NM_198690 386676 Hs.474000 NM_198690 ENSG00000221837 KRTAP10-9 KAP10.9|KAP18.9|KRTAP18-9 keratin associated protein 10-9 protein-coding 755-19 chr13 41517520 41517994 + 3 NA Intergenic Intergenic 50638 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 397-189 chr20 57765581 57765780 + 3 NA Intergenic L1MEf|LINE|L1 -54144 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 983-24 chr8 103361020 103361493 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -10282 NM_138455 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 279-69 chr11 65138781 65138959 + 3 NA Intergenic L1ME1|LINE|L1 -4351 NM_032431 84447 Hs.75859 NM_032431 ENSG00000162298 SYVN1 DER3|HRD1 synoviolin 1 protein-coding 887-24 chr5 46200458 46200854 + 3 NA Intergenic ALR/Alpha|Satellite|centr -504276 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 414-298 chr7 18249814 18250027 + 3 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -40172 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 603-56 chr15 94919628 94919972 + 3 NA Intergenic Intergenic 64437 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 373-409 chr8 80728090 80728219 + 3 NA intron (NM_001033723, intron 2 of 8) MIRb|SINE|MIR 146314 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 799-46 chr5 159386186 159386622 + 3 NA Intergenic L1PB4|LINE|L1 54886 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 557-158 chr5 46165162 46165400 + 3 NA Intergenic ALR/Alpha|Satellite|centr -468901 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 624-116 chr8 72420901 72421238 + 3 NA Intergenic Intergenic -116156 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 483-207 chr5 64290585 64290759 + 3 NA intron (NM_001113561, intron 5 of 7) L1PA10|LINE|L1 124829 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 524-2 chr1 14213308 14213709 + 3 NA Intergenic L2a|LINE|L2 206465 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 576-8 chr1 191218871 191219119 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 9503 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 476-122 chr18 68512301 68512465 + 3 NA Intergenic L1M8|LINE|L1 202725 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 529-233 chr9 86328144 86328433 + 3 NA intron (NM_001185059, intron 11 of 26) (ACTGACA)n|Simple_repeat|Simple_repeat 26122 NM_001185059 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 427-218 chr5 153016948 153017248 + 3 NA Intergenic L1M4c|LINE|L1 -44749 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 497-36 chr11 25457569 25457883 + 3 NA Intergenic AluSx1|SINE|Alu -731397 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 666-32 chr15 65559436 65559712 + 3 NA intron (NM_016395, intron 5 of 10) Charlie15a|DNA|hAT-Charlie 29111 NM_016395 51495 Hs.512973 NM_016395 ENSG00000074696 HACD3 B-IND1|BIND1|HSPC121|PTPLAD1 3-hydroxyacyl-CoA dehydratase 3 protein-coding 487-96 chr15 26490662 26490924 + 3 NA Intergenic Intergenic 138297 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 556-217 chr8 67624565 67624759 + 3 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 121698 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 454-354 chrX 99417426 99417663 + 3 NA Intergenic L1PA15|LINE|L1 992729 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 603-26 chr11 84690735 84691059 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 30045 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 474-92 chr15 48587457 48587773 + 3 NA intron (NM_000138, intron 6 of 65) intron (NM_000138, intron 6 of 65) 58173 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 792-33 chr2 124678997 124679519 + 3 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 653971 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 875-9 chr14 65494259 65494756 + 3 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 23405 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 433-65 chr12 98039647 98039857 + 3 NA Intergenic L1MB8|LINE|L1 -44304 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 597-108 chr5 92570307 92570660 + 3 NA Intergenic Intergenic 1000860 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 524-270 chr8 129017437 129017816 + 3 NA Intergenic MIRb|SINE|MIR -51625 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 812-16 chr12 99557533 99557871 + 3 NA intron (NM_152788, intron 9 of 25) L1PA13|LINE|L1 -90051 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 1224 chr12 18048167 18048857 + 3 NA Intergenic Intergenic 41681 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 394-100 chr14 49709909 49710066 + 3 NA intron (NM_172193, intron 3 of 12) intron (NM_172193, intron 3 of 12) 16867 NM_172193 122773 Hs.509258 NM_172193 ENSG00000197776 KLHDC1 MST025 kelch domain containing 1 protein-coding 346-542 chrX 82479558 82479782 + 3 NA Intergenic L1MB3|LINE|L1 -1028620 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 447-290 chr9 38235660 38235940 + 3 NA Intergenic Intergenic -156902 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 596-100 chr2 126695274 126695581 + 3 NA intron (NM_001256584, intron 4 of 4) intron (NM_001256584, intron 4 of 4) 39269 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 450-215 chr3 193750449 193750737 + 3 NA Intergenic L1MEc|LINE|L1 93416 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 584-100 chr3 44245611 44246149 + 3 NA intron (NM_001145030, intron 2 of 19) intron (NM_001145030, intron 2 of 19) 3994 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 602-13 chr10 107098014 107098288 + 3 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 66555 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 417-144 chr2 102085719 102085985 + 3 NA intron (NM_001320978, intron 1 of 11) L1ME3A|LINE|L1 15462 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 690-93 chr6 130486020 130486441 + 3 NA Intergenic Intergenic 49113 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 505-158 chr2 114372927 114373149 + 3 NA Intergenic Intergenic -69603 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 728-110 chrX 54762965 54763398 + 3 NA intron (NM_198510, intron 6 of 12) intron (NM_198510, intron 6 of 12) 35074 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 774-11 chr10 121120703 121121018 + 3 NA Intergenic Intergenic 269498 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 400-176 chr2 141606403 141606601 + 3 NA intron (NM_018557, intron 2 of 90) MLT1B|LTR|ERVL-MaLR 525199 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 371-341 chr6 81726141 81726377 + 3 NA Intergenic L1MA2|LINE|L1 26422 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 455-235 chr5 160972451 160972628 + 3 NA Intergenic Intergenic -33913 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 279-244 chr3 13185667 13185845 + 3 NA Intergenic MIRb|SINE|MIR -112327 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 414-49 chr11 85462990 85463165 + 3 NA intron (NM_001142699, intron 3 of 27) MLT1B|LTR|ERVL-MaLR 164193 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 693-38 chr15 72425255 72425652 + 3 NA intron (NR_135678, intron 1 of 3) L1M4a1|LINE|L1 27148 NM_001080462 338949 Hs.446069 NM_001080462 ENSG00000187806 TMEM202 - transmembrane protein 202 protein-coding 393-161 chr2 58885489 58885736 + 3 NA intron (NR_033873, intron 3 of 13) MIR3|SINE|MIR -332096 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 460-141 chr2 78031963 78032256 + 3 NA intron (NR_110288, intron 1 of 3) L1MC1|LINE|L1 -56621 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 272-198 chr2 79708498 79708725 + 3 NA intron (NM_001282598, intron 2 of 17) Helitron1Nb_Mam|RC|Helitron -59252 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 464-4 chr1 62767202 62767442 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -16784 NM_178221 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 367-272 chr3 15940214 15940435 + 3 NA Intergenic L2a|LINE|L2 66553 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 522-228 chr6 143571928 143572239 + 3 NA Intergenic Intergenic -2744 NR_027113 285740 Hs.432656 NR_027113 ENSG00000235740 PHACTR2-AS1 - PHACTR2 antisense RNA 1 ncRNA 403-115 chr15 91745257 91745437 + 3 NA Intergenic LTR107_Mam|LTR|LTR -108361 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 418-142 chr20 45668629 45668858 + 3 NA intron (NM_147197, intron 1 of 4) intron (NM_147197, intron 1 of 4) 1496 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 519-216 chr7 104635160 104635415 + 3 NA intron (NM_199000, intron 1 of 2) HAL1|LINE|L1 168805 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 670-128 chr8 127026892 127027294 + 3 NA Intergenic L1PA14|LINE|L1 13939 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 959-31 chr7 32003204 32003647 + 3 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 66982 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 495-117 chr2 147617207 147617423 + 3 NA Intergenic Intergenic -227202 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 243-57 chr10 89208451 89208606 + 3 NA Intergenic Intergenic -1211 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 604-160 chr8 62475811 62476126 + 3 NA intron (NM_001304533, intron 1 of 6) MIR|SINE|MIR 227114 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 460-285 chr8 76568155 76568442 + 3 NA Intergenic Intergenic -112949 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 240-408 chr8 33704261 33704372 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -104210 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 385-84 chr13 72308453 72308667 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 419069 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 311-23 chr1 118976769 118976888 + 3 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 11515 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 905-33 chr9 35140795 35141238 + 3 NA Intergenic MER52-int|LTR|ERV1 -20993 NM_001371189 335-385 chr4 64890962 64891147 + 3 NA Intergenic Intergenic 113446 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 808-39 chr4 122480543 122481070 + 3 NA Intergenic Intergenic -24311 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 684-114 chr7 88259888 88260203 + 3 NA Intergenic Intergenic -33052 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 486-125 chr19 29368064 29368261 + 3 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -155011 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 692-13 chr11 26215058 26215493 + 3 NA intron (NM_001313726, intron 1 of 27) L1MC3|LINE|L1 26152 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 611-30 chr12 15239968 15240330 + 3 NA Intergenic Intergenic -18732 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 560-3 chr1 31843297 31843675 + 3 NA Intergenic Intergenic -27435 NM_144569 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 747-12 chr11 115821329 115821607 + 3 NA Intergenic L1MEd|LINE|L1 -61268 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 311-298 chr20 19789390 19789535 + 3 NA Intergenic Intergenic -97059 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 771-31 chr16 64661170 64661641 + 3 NA Intergenic L1MA9|LINE|L1 460658 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 442-319 chr9 135148487 135148747 + 3 NA Intergenic Intergenic -32992 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 457-6 chr1 74384029 74384282 + 3 NA intron (NM_015978, intron 17 of 24) LFSINE_Vert|SINE|tRNA 99285 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 324-399 chr4 96070518 96070743 + 3 NA Intergenic Intergenic 230537 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 547-31 chr11 20885752 20886090 + 3 NA intron (NM_201551, intron 5 of 18) intron (NM_201551, intron 5 of 18) 216335 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 486-68 chr13 79876544 79876773 + 3 NA intron (NR_120413, intron 1 of 5) MIR3|SINE|MIR 4072 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 440-45 chr12 27448306 27448574 + 3 NA Intergenic Intergenic -1806 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 924-2 chr1 84474728 84475171 + 3 NA Intergenic L1MA9|LINE|L1 -4317 NM_025065 80135 Hs.481202 NM_025065 ENSG00000117133 RPF1 BXDC5 ribosome production factor 1 homolog protein-coding 464-109 chr2 22430155 22430344 + 3 NA Intergenic Intergenic -106230 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 375-202 chr2 36623106 36623275 + 3 NA Intergenic Intergenic -25022 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 630-59 chr2 129918623 129919003 + 3 NA Intergenic L1M3c|LINE|L1 -4364 NR_110285 101927924 Hs.570248 NR_110285 ENSG00000237574 LINC01856 - long intergenic non-protein coding RNA 1856 ncRNA 613-116 chr6 63910212 63910581 + 3 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 103560 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 232-191 chr2 155378537 155378644 + 3 NA Intergenic Intergenic 679895 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 1191-4 chr5 113716689 113717433 + 3 NA Intergenic Intergenic 203367 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 317-287 chr22 31009479 31009703 + 3 NA Intergenic AluSz|SINE|Alu 40380 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 361-202 chr2 11851149 11851305 + 3 NA Intergenic MIRb|SINE|MIR -14241 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 392-87 chr15 27432282 27432478 + 3 NA intron (NM_001270873, intron 5 of 5) L1MB7|LINE|L1 -271061 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 498-94 chr15 33842691 33843019 + 3 NA intron (NM_001243996, intron 90 of 102) intron (NM_001243996, intron 90 of 102) -125642 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 502-109 chr17 33164937 33165256 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 127892 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 490-271 chr7 64508310 64508556 + 3 NA Intergenic Intergenic 54638 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 387-176 chr2 104297656 104297808 + 3 NA Intergenic LTR45C|LTR|ERV1 110600 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 783-43 chr2 114231464 114232041 + 3 NA Intergenic MER4A1|LTR|ERV1 -210889 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 603-109 chr3 74872056 74872330 + 3 NA Intergenic Intergenic -342283 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 458-188 chr4 101459074 101459260 + 3 NA Intergenic L1PA14|LINE|L1 111390 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 493-121 chr18 64277054 64277387 + 3 NA intron (NR_033881, intron 3 of 9) MER92B|LTR|ERV1 -17165 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 512-173 chr3 118256799 118257019 + 3 NA Intergenic Intergenic -384859 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 536-87 chr16 54500014 54500326 + 3 NA Intergenic MER115|DNA|hAT-Tip100 -129471 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 482-239 chr7 24208930 24209234 + 3 NA Intergenic Intergenic -75108 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 907-19 chr3 98114608 98114981 + 3 NA Intergenic MER61A|LTR|ERV1 -17904 NM_001005338 26341 Hs.537383 NM_001005338 ENSG00000231192 OR5H1 HSHTPCRX14|HTPCRX14 olfactory receptor family 5 subfamily H member 1 protein-coding 539-105 chr2 41604997 41605319 + 3 NA Intergenic Intergenic -272397 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 607-49 chr16 6679005 6679369 + 3 NA intron (NM_018723, intron 3 of 15) MER113|DNA|hAT-Charlie -94622 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 878-21 chr16 62288207 62288738 + 3 NA Intergenic MIR|SINE|MIR -252034 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 260-400 chr7 17757181 17757339 + 3 NA Intergenic Intergenic 183234 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 671-81 chr5 178956002 178956417 + 3 NA intron (NM_001178089, intron 4 of 4) HAL1|LINE|L1 15011 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 342-373 chr4 136816291 136816416 + 3 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -377403 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 776-28 chr2 217561810 217562392 + 3 NA intron (NR_026597, intron 2 of 12) MER4D1|LTR|ERV1 194492 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 285-119 chr14 54515444 54515648 + 3 NA intron (NM_006568, intron 1 of 5) L1MEc|LINE|L1 5640 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 604-75 chr2 5545859 5546239 + 3 NA Intergenic Intergenic 145069 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 412-281 chr6 77435607 77435780 + 3 NA Intergenic Intergenic 28329 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 694-65 chr2 77719793 77720133 + 3 NA Intergenic Intergenic -195971 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 196-19 chr1 161501299 161501419 + 3 NA Intergenic Intergenic -4098 NM_001136219 2212 Hs.352642 NM_021642 ENSG00000143226 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG receptor IIa protein-coding 490-238 chr6 33928656 33928951 + 3 NA Intergenic L1M4|LINE|L1 29668 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 503-92 chr14 39446960 39447199 + 3 NA Intergenic L2a|LINE|L2 -14579 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 432-235 chr5 143754277 143754551 + 3 NA Intergenic Intergenic -57747 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 513-209 chr4 79387230 79387552 + 3 NA Intergenic L1ME4a|LINE|L1 20837 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 615-34 chr14 68435817 68436217 + 3 NA intron (NM_133509, intron 9 of 10) L1PA16|LINE|L1 192770 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 451-56 chr14 37155445 37155678 + 3 NA intron (NM_001171170, intron 1 of 10) L1MA4A|LINE|L1 -16465 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 554-48 chr11 83370618 83370907 + 3 NA Intergenic L1MC3|LINE|L1 -84355 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 1063-19 chr4 116727866 116728329 + 3 NA Intergenic Intergenic 357479 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 573-27 chr10 80766945 80767298 + 3 NA Intergenic L1MDa|LINE|L1 117324 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 782-73 chr8 144559513 144559903 + 3 NA intron (NM_025251, intron 2 of 10) Tigger4b|DNA|TcMar-Tigger -30597 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 245-178 chr2 11415014 11415147 + 3 NA Intergenic Intergenic 21099 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 658-50 chr16 9857954 9858317 + 3 NA intron (NM_001134408, intron 4 of 13) MLT1K|LTR|ERVL-MaLR 323932 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 545-214 chr6 153153771 153154013 + 3 NA Intergenic L1M8|LINE|L1 -22610 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 546-75 chr15 24667918 24668191 + 3 NA Intergenic L2c|LINE|L2 -7340 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 594-151 chr8 119337266 119337536 + 3 NA Intergenic Intergenic 12230 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 437-253 chr7 48719986 48720201 + 3 NA Intergenic L1MC5a|LINE|L1 -204454 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 484-86 chr16 64285790 64286098 + 3 NA Intergenic AluJb|SINE|Alu 836119 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 505-324 chr9 28038740 28039009 + 3 NA intron (NM_152570, intron 5 of 6) LTR103_Mam|LTR|ERV1? -465008 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 393-49 chr11 21455519 21455745 + 3 NA intron (NM_201551, intron 15 of 18) L1ME1|LINE|L1 -737453 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 1051-20 chr8 32863757 32864536 + 3 NA Intergenic L1PA15|LINE|L1 142311 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 501-56 chr12 112691414 112691733 + 3 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 3603 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 981-11 chr19 27563040 27563688 + 3 NA Intergenic ALR/Alpha|Satellite|centr -230067 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 538-86 chr17 55927073 55927391 + 3 NA Intergenic MIR|SINE|MIR 176127 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 610-121 chr4 375117 375386 + 3 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 25094 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 1397-3 chr4 54608075 54608880 + 3 NA Intergenic L1MC4|LINE|L1 -1346 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 508-55 chr13 40300502 40300759 + 3 NA Intergenic L1PBa|LINE|L1 -80128 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 322-123 chr12 54845848 54846012 + 3 NA Intergenic L1MC4|LINE|L1 -8586 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 445-5 chr1 67946612 67946773 + 3 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 104939 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 908-32 chr4 62534779 62535372 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -373310 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 368-404 chr6 131040657 131040882 + 3 NA intron (NM_001135554, intron 1 of 14) L1MC5a|LINE|L1 22476 NM_001431 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 370-303 chr3 19294910 19295094 + 3 NA intron (NM_144633, intron 3 of 15) intron (NM_144633, intron 3 of 15) 19929 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 350-289 chr21 28276903 28277117 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -48343 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 578-186 chr8 134146063 134146407 + 3 NA Intergenic Intergenic 259739 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 710-91 chr8 79335800 79336274 + 3 NA Intergenic L1PB1|LINE|L1 3849 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 1027-19 chr8 142932821 142933309 + 3 NA Intergenic L1MEi|LINE|L1 -15222 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 508-267 chrX 84830504 84830720 + 3 NA Intergenic Intergenic -103539 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 378-145 chr14 82444795 82445021 + 3 NA Intergenic Intergenic -197724 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 468-175 chr20 40037358 40037628 + 3 NA Intergenic L1MEf|LINE|L1 33032 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 592-43 chr13 110950885 110951166 + 3 NA Intergenic Intergenic -15002 NR_126378 104355135 Hs.649708 NR_126378 LINC00431 - long intergenic non-protein coding RNA 431 ncRNA 541-145 chr21 26875371 26875645 + 3 NA Intergenic L1MC4a|LINE|L1 -30099 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 1002-9 chr3 41252926 41253493 + 3 NA intron (NR_136342, intron 33 of 34) L1MEf|LINE|L1 53704 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 577-159 chr5 148599698 148599929 + 3 NA intron (NM_001040172, intron 1 of 5) L1ME3|LINE|L1 37248 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 295-406 chr6 54400591 54400738 + 3 NA Intergenic L2a|LINE|L2 92223 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 648-140 chr7 141893367 141893649 + 3 NA Intergenic L1MD3|LINE|L1 -25368 NM_001001656 130075 Hs.690171 NM_001001656 ENSG00000258083 OR9A4 - olfactory receptor family 9 subfamily A member 4 protein-coding 798-62 chr7 112827003 112827342 + 3 NA intron (NM_152556, intron 4 of 4) L1ME1|LINE|L1 -36749 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 751-27 chr18 73632189 73632763 + 3 NA Intergenic L1M4a1|LINE|L1 307535 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 483-4 chr1 50124781 50124988 + 3 NA intron (NM_001324217, intron 1 of 3) MIR|SINE|MIR 15051 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 530-11 chr1 114119322 114119584 + 3 NA intron (NM_001366223, intron 3 of 7) MIR|SINE|MIR 32987 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 248-116 chr14 62716330 62716456 + 3 NA intron (NM_172375, intron 9 of 9) L2c|LINE|L2 329065 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 577-53 chr12 124138717 124138974 + 3 NA intron (NM_001347902, intron 2 of 4) L1ME4a|LINE|L1 -150319 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 852-12 chr11 114632177 114632708 + 3 NA Intergenic (ATAAT)n|Simple_repeat|Simple_repeat -36656 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 776-6 chr10 24158239 24158694 + 3 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -50325 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 1007-3 chr17 63287167 63287662 + 3 NA intron (NM_025185, intron 8 of 25) L1MEc|LINE|L1 152853 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 549-128 chr20 39347408 39347605 + 3 NA Intergenic L1MA9|LINE|L1 -122758 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 648-11 chr10 18744966 18745392 + 3 NA Intergenic Intergenic 85748 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 402-225 chr3 194530093 194530275 + 3 NA Intergenic L1ME1|LINE|L1 43044 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 705-75 chr4 63995957 63996318 + 3 NA Intergenic Intergenic 413313 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 257-93 chr12 80596254 80596414 + 3 NA intron (NM_001145026, intron 26 of 44) intron (NM_001145026, intron 26 of 44) -111300 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 513-157 chr2 228088217 228088474 + 3 NA intron (NM_030623, intron 3 of 10) L1M4b|LINE|L1 93300 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 830-34 chr3 98189522 98189977 + 3 NA Intergenic Intergenic 21049 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 563-107 chr20 47915001 47915215 + 3 NA Intergenic Intergenic -68118 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 1250-3 chr5 46053338 46053950 + 3 NA Intergenic ALR/Alpha|Satellite|centr -357264 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 501-137 chr20 57071775 57071998 + 3 NA Intergenic MIR|SINE|MIR -141810 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 482-289 chr9 9884903 9885099 + 3 NA intron (NM_002839, intron 5 of 45) MLT1D-int|LTR|ERVL-MaLR 85609 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 462-135 chr2 41793736 41794007 + 3 NA Intergenic Intergenic -83684 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 436-10 chr1 81391186 81391429 + 3 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 84912 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 563-89 chr2 67586591 67586882 + 3 NA Intergenic L2a|LINE|L2 189403 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 498-18 chr1 227599612 227599927 + 3 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 36213 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 445-282 chr8 142370067 142370226 + 3 NA intron (NM_001366903, intron 1 of 9) MLT1A0|LTR|ERVL-MaLR 33036 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 228-222 chr3 120045891 120046034 + 3 NA intron (NM_002093, intron 1 of 11) L1MC2|LINE|L1 38686 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 667-16 chr10 117443761 117444111 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -68496 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 619-137 chr9 95618981 95619280 + 3 NA Intergenic Intergenic -102073 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 784-33 chr2 195291800 195292246 + 3 NA Intergenic L1PA10|LINE|L1 -364935 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 581-169 chr8 77056003 77056331 + 3 NA Intergenic Intergenic -55123 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 425-136 chr2 58828468 58828634 + 3 NA intron (NR_033873, intron 2 of 13) L1M1|LINE|L1 307798 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 765-28 chr2 12582902 12583503 + 3 NA Intergenic HAL1|LINE|L1 -133670 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 426-86 chr15 67286843 67287139 + 3 NA intron (NM_001322475, intron 3 of 17) L1PA13|LINE|L1 -31793 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 938-4 chr12 16189222 16189792 + 3 NA 3' UTR (NM_001170798, exon 9 of 9) 3' UTR (NM_001170798, exon 9 of 9) 88178 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 518-166 chr21 43796422 43796676 + 3 NA intron (NM_003683, intron 5 of 12) intron (NM_003683, intron 5 of 12) 6972 NM_003683 8568 Hs.110757 NM_003683 ENSG00000160214 RRP1 D21S2056E|NNP-1|NOP52|RRP1A ribosomal RNA processing 1 protein-coding 506-97 chr15 92206459 92206664 + 3 NA Intergenic L1M2|LINE|L1 -187320 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 511-282 chr9 108694380 108694626 + 3 NA Intergenic Intergenic 161483 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 614-93 chr5 11282586 11283000 + 3 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 306124 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 514-201 chr4 67500051 67500365 + 3 NA intron (NR_155754, intron 12 of 18) Tigger1|DNA|TcMar-Tigger 45295 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 407-135 chr2 21321578 21321754 + 3 NA Intergenic L2|LINE|L2 197680 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 299-248 chr2 239337857 239338017 + 3 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) 13867 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 345-526 chr8 103655110 103655238 + 3 NA intron (NM_001348488, intron 3 of 25) intron (NM_001348488, intron 3 of 25) -153264 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 663-72 chr4 14522565 14523003 + 3 NA intron (NR_126435, intron 5 of 6) MLT1F2|LTR|ERVL-MaLR 365385 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 507-13 chr1 177216907 177217222 + 3 NA intron (NM_021165, intron 1 of 7) L1M3b|LINE|L1 46106 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 452-227 chr6 10863868 10864114 + 3 NA Intergenic Intergenic 17874 NM_004752 9247 Hs.227098 NM_004752 ENSG00000124827 GCM2 GCMB|HRPT4|hGCMb glial cells missing transcription factor 2 protein-coding 260-15 chr1 106920652 106920774 + 3 NA Intergenic Intergenic 102474 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 1113 chr1 110721290 110722001 + 3 NA Intergenic Intergenic -46705 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 437-47 chr12 12496596 12496817 + 3 NA intron (NM_030640, intron 4 of 6).2 intron (NM_030640, intron 4 of 6).2 66157 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 225-81 chr12 133240606 133240722 + 3 NA Intergenic MER96B|DNA|hAT-Tip100 -4828 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 413-166 chr20 31058553 31058757 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -199009 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 632-36 chr16 14188432 14188848 + 3 NA intron (NM_001365411, intron 1 of 14) MIRb|SINE|MIR 1954 NM_001365411 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 946-10 chr2 6596734 6597290 + 3 NA Intergenic MIRb|SINE|MIR 36775 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 518-235 chr5 62193022 62193287 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -113008 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 927-15 chr5 45061869 45062427 + 3 NA Intergenic L1MC4a|LINE|L1 253201 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 467-42 chr11 21090870 21091059 + 3 NA intron (NM_201551, intron 12 of 18) MIRb|SINE|MIR 421378 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 470-98 chr17 66933032 66933217 + 3 NA Intergenic Intergenic -31583 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 523-255 chr7 87032243 87032513 + 3 NA intron (NM_001142749, intron 1 of 21) intron (NM_001142749, intron 1 of 21) 7856 NM_001291990 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 661-73 chr4 98402798 98403312 + 3 NA intron (NM_021159, intron 6 of 14) HAL1|LINE|L1 141671 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 392-180 chr21 20328880 20329026 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -70268 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 588-112 chr4 78550945 78551207 + 3 NA promoter-TSS (NM_005139) promoter-TSS (NM_005139) -694 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 567-162 chr6 162329223 162329478 + 3 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -397782 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 1008-2 chr10 37965423 37966130 + 3 NA intron (NR_138064, intron 2 of 6) L1MB5|LINE|L1 10204 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 546-199 chr5 158255053 158255268 + 3 NA Intergenic Intergenic 154613 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 433-87 chr14 94950490 94950748 + 3 NA Intergenic Intergenic 179977 NR_144432 108868751 NR_144432 GSC-DT DIGIT GSC divergent transcript ncRNA 635-71 chr4 10235578 10235827 + 3 NA Intergenic Intergenic -118903 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 332-522 chr8 71437829 71438080 + 3 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -75885 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 406-87 chr14 72842477 72842666 + 3 NA intron (NM_001280542, intron 1 of 10) L1ME3A|LINE|L1 50078 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 460-129 chr2 6585149 6585448 + 3 NA Intergenic HAL1|LINE|L1 48489 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 525-55 chr12 39670731 39671080 + 3 NA intron (NM_001031748, intron 7 of 12) L1MA4A|LINE|L1 44722 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 388-360 chr8 142328021 142328200 + 3 NA intron (NM_001366903, intron 6 of 9) LTR10E|LTR|ERV1 75072 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 397-42 chr10 108947862 108948027 + 3 NA Intergenic L1M4b|LINE|L1 -878651 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 749-54 chr2 133510573 133510951 + 3 NA intron (NM_207481, intron 3 of 17) MIR|SINE|MIR 57701 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 361-83 chr11 92023364 92023563 + 3 NA Intergenic Intergenic -201571 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 352-123 chr13 55167643 55167816 + 3 NA Intergenic L1PA15|LINE|L1 -6725 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 1016-16 chr5 100968779 100969339 + 3 NA Intergenic Intergenic -65777 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 588-65 chr2 31162819 31163115 + 3 NA Intergenic Intergenic -24527 NM_001329096 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 406-41 chr10 117867544 117867791 + 3 NA Intergenic Intergenic -179154 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 696-74 chr3 107061010 107061423 + 3 NA Intergenic Intergenic 179422 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 516-134 chr2 126092923 126093257 + 3 NA Intergenic L1MA3|LINE|L1 24895 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 654-64 chr2 19644889 19645234 + 3 NA Intergenic L1MD3|LINE|L1 -223793 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 561-49 chr12 48464873 48465168 + 3 NA Intergenic L1PA13|LINE|L1 -7645 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 481-287 chr8 8353881 8354143 + 3 NA intron (NM_001369759, intron 3 of 5) L1M3|LINE|L1 32232 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 1391-3 chr3 173430977 173431804 + 3 NA intron (NM_001365932, intron 1 of 5) intron (NM_001365932, intron 1 of 5) 33646 NM_001365931 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 296-428 chr7 4516226 4516359 + 3 NA Intergenic L1M4c|LINE|L1 -166003 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 486-278 chr7 45311647 45311933 + 3 NA Intergenic L1M2|LINE|L1 153999 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 734-31 chr2 6707027 6707408 + 3 NA Intergenic L1MB7|LINE|L1 -56698 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 413-296 chr8 40428705 40428859 + 3 NA Intergenic L1P4|LINE|L1 -85419 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 494-99 chr17 80698997 80699313 + 3 NA intron (NM_020761, intron 3 of 33) intron (NM_020761, intron 3 of 33) 106477 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 526-113 chr2 12476934 12477251 + 3 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -239780 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 553-216 chr7 55370337 55370651 + 3 NA intron (NM_018697, intron 1 of 8) LTR41|LTR|ERVL 5046 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 522-201 chr5 20184751 20184990 + 3 NA intron (NM_001291956, intron 2 of 14) MIR3|SINE|MIR -120681 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 436-127 chr2 39341875 39342053 + 3 NA intron (NM_003618, intron 4 of 33) intron (NM_003618, intron 4 of 33) 95321 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 425-161 chr20 1847223 1847396 + 3 NA Intergenic L2a|LINE|L2 -46858 NM_001330728 140885 Hs.581021 NM_080792 ENSG00000198053 SIRPA BIT|CD172A|MFR|MYD-1|P84|PTPNS1|SHPS1|SIRP signal regulatory protein alpha protein-coding 503-284 chr8 111529770 111530001 + 3 NA Intergenic Intergenic 153246 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 406-58 chr12 29112120 29112324 + 3 NA Intergenic L1M2|LINE|L1 -37056 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 426-256 chr6 81118971 81119222 + 3 NA Intergenic L1MC1|LINE|L1 633585 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 462-160 chr21 21577630 21577907 + 3 NA Intergenic Intergenic 159551 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 541-195 chr5 147358675 147359065 + 3 NA intron (NM_001112724, intron 7 of 12) L1ME3B|LINE|L1 94822 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 392-280 chr6 85782159 85782370 + 3 NA Intergenic MER21C|LTR|ERVL -103531 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 344-330 chr3 126216207 126216398 + 3 NA Intergenic MIRc|SINE|MIR -35116 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 592-78 chr2 18590575 18590846 + 3 NA Intergenic Intergenic -1130 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 413-175 chr21 24949587 24949760 + 3 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 109123 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 557-152 chr5 12436779 12436976 + 3 NA Intergenic Intergenic -137980 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 388-308 chr6 75137972 75138210 + 3 NA intron (NM_080645, intron 15 of 50) MLT1A|LTR|ERVL-MaLR -9309 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 553-76 chr16 35449869 35450251 + 3 NA Intergenic Intergenic 30536 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 499-86 chr17 41451334 41451634 + 3 NA Intergenic LTR19A|LTR|ERV1 -10140 NM_006771 8687 Hs.248188 NM_006771 ENSG00000171360 KRT38 HA8|KRTHA8|hHa8 keratin 38 protein-coding 635-66 chr3 97722767 97723134 + 3 NA intron (NM_001080448, intron 15 of 17) MIR3|SINE|MIR -41571 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 416-216 chr3 24304340 24304669 + 3 NA intron (NM_001354710, intron 2 of 10) L1M5|LINE|L1 153180 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 574-48 chr16 24676722 24676945 + 3 NA intron (NM_001351850, intron 2 of 23) L2a|LINE|L2 -5771 NR_122072 400511 Hs.592028 NR_122072 ENSG00000224310 LINC01567 LOCCS long intergenic non-protein coding RNA 1567 ncRNA 758-22 chr14 25602507 25602966 + 3 NA Intergenic Intergenic -552439 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 504-265 chr8 122357300 122357517 + 3 NA Intergenic L1PA15|LINE|L1 211236 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 501-183 chr4 16816713 16816940 + 3 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 81819 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 506-197 chr4 12995071 12995339 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 489135 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 405-50 chr11 97189533 97189695 + 3 NA Intergenic MER90a|LTR|ERV1 681189 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 506-237 chr5 110240181 110240457 + 3 NA Intergenic LTR33B|LTR|ERVL 273596 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 745-13 chr14 54722676 54722990 + 3 NA intron (NM_001161576, intron 2 of 10) intron (NM_001161576, intron 2 of 10) -32000 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 288-456 chr8 132166874 132167066 + 3 NA intron (NM_001204824, intron 8 of 14) L1MB7|LINE|L1 -61705 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 512-163 chr3 40734347 40734679 + 3 NA Intergenic L1PB|LINE|L1 209553 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 614-24 chr12 37907138 37907487 + 3 NA Intergenic ALR/Alpha|Satellite|centr -409462 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 514-277 chr7 131083845 131084045 + 3 NA intron (NR_109850, intron 2 of 5) L1MC4|LINE|L1 23085 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 354-42 chr10 15997789 15998050 + 3 NA Intergenic L1PA16|LINE|L1 -137386 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 688-51 chr15 100121543 100121898 + 3 NA intron (NM_139057, intron 12 of 21) L1M4c|LINE|L1 220255 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 709-77 chr5 101012890 101013326 + 3 NA Intergenic Intergenic -109826 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 1110-5 chr12 131398105 131398722 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 50943 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 578-11 chr1 174457128 174457447 + 3 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 9323 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 553-252 chrX 97887784 97888050 + 3 NA Intergenic L1ME2|LINE|L1 -323382 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 395-157 chr2 15115841 15115993 + 3 NA Intergenic Intergenic 445417 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 466-79 chr14 80120759 80120980 + 3 NA Intergenic Intergenic -90550 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 338-320 chr22 44465244 44465426 + 3 NA Intergenic L1MDa|LINE|L1 22008 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 827-19 chr16 13775101 13775503 + 3 NA Intergenic MER3|DNA|hAT-Charlie -144855 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 529-235 chr9 97754478 97754799 + 3 NA intron (NR_147055, intron 5 of 10) L1MD3|LINE|L1 -57229 NR_149093 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 500-64 chr12 33011791 33012042 + 3 NA Intergenic MER45A|DNA|hAT-Tip100 -115070 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 464-120 chr2 71979564 71979795 + 3 NA Intergenic L1PB3|LINE|L1 168183 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 346-191 chr17 54534847 54535015 + 3 NA Intergenic LTR82A|LTR|ERVL -365760 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 671-28 chr14 36858001 36858391 + 3 NA intron (NM_001171170, intron 2 of 10) intron (NM_001171170, intron 2 of 10) 94195 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 751-16 chr13 94421855 94422179 + 3 NA Intergenic Intergenic 57665 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 390-23 chr1 198262991 198263156 + 3 NA intron (NM_133494, intron 4 of 9) intron (NM_133494, intron 4 of 9) 106075 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 577-16 chr1 154295615 154295858 + 3 NA Intergenic L1M4a1|LINE|L1 23107 NM_001018837 10456 Hs.199625 NM_006118 ENSG00000143575 HAX1 HCLSBP1|HS1BP1|SCN3 HCLS1 associated protein X-1 protein-coding 338-231 chr18 65810945 65811079 + 3 NA intron (NM_001362438, intron 3 of 11) intron (NM_001362438, intron 3 of 11) 60000 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 912-12 chr12 29253273 29253739 + 3 NA intron (NM_001271784, intron 1 of 10) MLT2D|LTR|ERVL 29840 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 486-199 chr3 19295505 19295760 + 3 NA intron (NM_144633, intron 3 of 15) intron (NM_144633, intron 3 of 15) 19299 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 858-30 chr20 43665713 43666272 + 3 NA Intergenic Intergenic -1027 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 236-198 chr2 224248135 224248271 + 3 NA Intergenic Intergenic 153791 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 418-100 chr18 77913070 77913228 + 3 NA Intergenic Intergenic 80578 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 831-10 chr12 114133119 114133575 + 3 NA Intergenic Intergenic 108423 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 390-232 chr3 29470010 29470300 + 3 NA intron (NM_001003792, intron 2 of 13) intron (NM_001003792, intron 2 of 13) 188843 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 504-6 chr1 91365517 91365726 + 3 NA intron (NM_001017975, intron 13 of 38) intron (NM_001017975, intron 13 of 38) 39216 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 494-198 chr4 35313602 35313883 + 3 NA Intergenic Tigger5|DNA|TcMar-Tigger 930197 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 423-183 chr3 139497409 139497565 + 3 NA intron (NR_121609, intron 3 of 4) LTR37A|LTR|ERV1 -20971 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 370-292 chr22 23247745 23248016 + 3 NA intron (NM_004327, intron 1 of 22) L1MB3|LINE|L1 -14887 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 441-28 chr10 78714583 78714852 + 3 NA Intergenic Intergenic 352731 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 347-164 chr16 52512654 52512790 + 3 NA intron (NM_001080430, intron 1 of 6) L2a|LINE|L2 34421 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 583-123 chr4 59991367 59991777 + 3 NA Intergenic Intergenic -931047 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 398-146 chr19 30366382 30366667 + 3 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -5860 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 475-98 chr16 50120781 50121109 + 3 NA Intergenic Intergenic -31966 NM_001365323 64282 Hs.514342 NM_022447 ENSG00000121274 TENT4B PAPD5|TRF4-2|TUT3 terminal nucleotidyltransferase 4B protein-coding 639-33 chr13 93001601 93002004 + 3 NA Intergenic Intergenic -43539 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 455-171 chr3 134588620 134588818 + 3 NA Intergenic L1M5|LINE|L1 62299 NM_001366276 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 447-270 chr8 87631246 87631523 + 3 NA Intergenic Intergenic 242631 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 490-96 chr15 25728524 25728828 + 3 NA intron (NM_024490, intron 3 of 20) intron (NM_024490, intron 3 of 20) 120149 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 596-126 chr4 41531147 41531456 + 3 NA intron (NM_001289122, intron 3 of 25) intron (NM_001289122, intron 3 of 25) -6856 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 468-9 chr1 95691648 95691885 + 3 NA Intergenic Intergenic 181650 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 172-109 chr5 178937922 178938012 + 3 NA Intergenic L2c|LINE|L2 -3231 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 597-4 chr1 45256825 45257123 + 3 NA Intergenic Intergenic -46936 NR_024270 400752 Hs.334348 NR_024270 ENSG00000281912 LINC01144 - long intergenic non-protein coding RNA 1144 ncRNA 680-105 chr6 165207531 165207891 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger 101894 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 387-38 chr10 53067301 53067518 + 3 NA Intergenic Intergenic -295709 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 487-15 chr1 102752802 102753004 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 355593 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 986-6 chr10 24671958 24672373 + 3 NA intron (NM_001367447, intron 2 of 24) L2-3_Crp|LINE|L2 -49322 NR_160025 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 456-187 chr21 34165546 34165757 + 3 NA Intergenic MER61-int|LTR|ERV1 -15026 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 424-64 chr14 34416155 34416332 + 3 NA Intergenic Intergenic 45997 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 352-479 chr7 418243 418506 + 3 NA Intergenic Intergenic 38949 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 634-31 chr11 91722583 91722817 + 3 NA Intergenic L1ME1|LINE|L1 -502334 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 558-34 chr11 60004942 60005281 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -18692 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 216-274 chr5 37535193 37535317 + 3 NA intron (NM_001345998, intron 9 of 17) L2a|LINE|L2 155937 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 956-3 chr1 194565338 194565726 + 3 NA Intergenic Intergenic 1260787 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 587-178 chrUn_GL000216v2 72378 72739 + 3 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 513-97 chr16 62535932 62536224 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -499640 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 295-350 chr4 86298348 86298541 + 3 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 56200 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 676-38 chr15 58171518 58171829 + 3 NA intron (NM_020980, intron 2 of 5) intron (NM_020980, intron 2 of 5) 33292 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 549-197 chr7 89713900 89714173 + 3 NA Intergenic L1M5|LINE|L1 -405364 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 696-35 chr13 30249573 30249853 + 3 NA intron (NM_032116, intron 4 of 10) L1ME3A|LINE|L1 57298 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 361-386 chr6 54448114 54448278 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 139755 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 876-8 chr11 116022830 116023268 + 3 NA Intergenic L1MB5|LINE|L1 -262849 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 469-83 chr14 52083420 52083632 + 3 NA Intergenic L1ME4b|LINE|L1 -14467 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 643-7 chr1 247628647 247629024 + 3 NA Intergenic L1M1|LINE|L1 23249 NM_001001914 81469 Hs.653227 NM_001001914 ENSG00000177476 OR2G3 OR1-33 olfactory receptor family 2 subfamily G member 3 protein-coding 367-404 chr6 157237532 157237719 + 3 NA Intergenic Intergenic 86634 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 344-123 chr13 73606518 73606671 + 3 NA Intergenic Intergenic 42350 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 375-288 chr4 59306696 59306927 + 3 NA Intergenic Intergenic 293238 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 597-114 chr6 40095530 40095848 + 3 NA Intergenic Intergenic -161227 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 609-5 chr1 179700444 179700912 + 3 NA Intergenic Intergenic -27098 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 377-94 chr12 73232500 73232693 + 3 NA Intergenic L1MA5|LINE|L1 73406 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 332-357 chr3 180490835 180491026 + 3 NA Intergenic Intergenic 76757 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 618-11 chr10 12752723 12752989 + 3 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -27503 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 379-126 chr18 5473895 5474064 + 3 NA intron (NM_001281535, intron 5 of 21) AluY|SINE|Alu 66577 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 497-17 chr10 33104464 33104649 + 3 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 12251 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 396-227 chr3 110287338 110287522 + 3 NA Intergenic L1M4|LINE|L1 684602 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 1036-8 chr12 118939411 118940022 + 3 NA Intergenic MIRc|SINE|MIR -41825 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 959-24 chr3 187684853 187685470 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR -14767 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 188-182 chr6 66819949 66820077 + 3 NA Intergenic Intergenic 1032134 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 531-199 chr5 60798181 60798508 + 3 NA intron (NM_001104558, intron 1 of 7) intron (NM_001104558, intron 1 of 7) 45925 NM_001297617 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 281-128 chr14 87629647 87629792 + 3 NA Intergenic Intergenic 25575 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 436-98 chr16 26383985 26384278 + 3 NA Intergenic MIR|SINE|MIR 358894 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 399-88 chr14 64176162 64176420 + 3 NA intron (NM_015180, intron 95 of 114) intron (NM_015180, intron 95 of 114) -37853 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 560-49 chr14 49044061 49044453 + 3 NA Intergenic Intergenic 542123 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 554-181 chr6 38431224 38431497 + 3 NA intron (NM_001172418, intron 5 of 10) MIR|SINE|MIR -50236 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 755-61 chr7 21760230 21760597 + 3 NA intron (NM_001277115, intron 54 of 81) LTR82B|LTR|ERVL 185486 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 649-4 chr1 188075259 188075591 + 3 NA Intergenic L1PA15|LINE|L1 631797 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 768-3 chr1 241432197 241432576 + 3 NA Intergenic MIRc|SINE|MIR -75156 NM_002924 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 507-218 chr6 55968295 55968506 + 3 NA Intergenic Intergenic -92810 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 785-11 chr10 61932175 61932707 + 3 NA intron (NM_032199, intron 2 of 9) AluJb|SINE|Alu 30742 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 239-46 chr10 96977257 96977381 + 3 NA intron (NM_001346516, intron 7 of 7) intron (NM_001346516, intron 7 of 7) -125437 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 381-158 chr18 72822905 72823109 + 3 NA intron (NM_001354018, intron 4 of 11) intron (NM_001354018, intron 4 of 11) 30375 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 419-55 chr11 98209037 98209209 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -811826 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 439-38 chr10 107728815 107729039 + 3 NA Intergenic Intergenic 340366 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 293-316 chr4 138577152 138577324 + 3 NA Intergenic L1M3f|LINE|L1 267527 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 491-62 chr13 98931911 98932085 + 3 NA intron (NM_001366682, intron 2 of 53) AluJb|SINE|Alu 46066 NM_001130048 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 476-101 chr16 19427134 19427426 + 3 NA intron (NM_001261841, intron 1 of 21) AluJr|SINE|Alu 9397 NM_001261841 79838 Hs.115838 NM_024780 ENSG00000103534 TMC5 - transmembrane channel like 5 protein-coding 472-78 chr14 25331958 25332212 + 3 NA Intergenic L1MA4A|LINE|L1 -281788 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 467-33 chr10 84996012 84996209 + 3 NA Intergenic Intergenic 202795 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 504-117 chr2 4176686 4177060 + 3 NA Intergenic LTR9|LTR|ERV1 202712 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 284-444 chr9 92195178 92195339 + 3 NA Intergenic L1ME1|LINE|L1 -4102 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 472 chr1 29012106 29012315 + 3 NA intron (NM_001166007, intron 5 of 17) intron (NM_001166007, intron 5 of 17) 97634 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 548-221 chr7 119167680 119167908 + 3 NA Intergenic L1MA4A|LINE|L1 739581 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 1085-6 chr16 8377460 8378053 + 3 NA Intergenic Intergenic 212082 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 453-179 chr4 45543018 45543289 + 3 NA Intergenic L1PREC2|LINE|L1 580901 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 517-266 chr8 90656468 90656685 + 3 NA Intergenic Intergenic -10493 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 334-562 chr9 27972267 27972450 + 3 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -398492 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 696-47 chr17 22724289 22724696 + 3 NA Intergenic ALR/Alpha|Satellite|centr 201381 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 537-254 chr8 90293961 90294194 + 3 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 72589 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 502-247 chr7 63092454 63092624 + 3 NA Intergenic AluSq10|SINE|Alu 211517 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 549-94 chr19 36399937 36400243 + 3 NA intron (NM_001321917, intron 4 of 4) Tigger13a|DNA|TcMar-Tigger 18554 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 468-277 chr6 40259385 40259605 + 3 NA Intergenic Intergenic 96511 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 665-61 chr3 170757739 170758013 + 3 NA Intergenic Intergenic 112319 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 581-125 chr4 166736045 166736374 + 3 NA intron (NM_001040159, intron 10 of 10) intron (NM_001040159, intron 10 of 10) 498217 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 711-60 chr5 136545752 136546168 + 3 NA Intergenic L1M2|LINE|L1 -180484 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 623-92 chr4 55452678 55453019 + 3 NA intron (NM_004898, intron 15 of 22) intron (NM_004898, intron 15 of 22) 56891 NR_073070 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 360-283 chr22 34809820 34809941 + 3 NA intron (NR_138042, intron 3 of 4) AluSc8|SINE|Alu 188036 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 343-235 chr2 47980392 47980531 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -74668 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 297-358 chr5 17086088 17086300 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 69798 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 1039-13 chr20 47072098 47072694 + 3 NA intron (NM_172110, intron 6 of 13) intron (NM_172110, intron 6 of 13) -94571 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 603-150 chr7 26972472 26972778 + 3 NA Intergenic L1PA13|LINE|L1 -108035 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 526-249 chr8 103757806 103758139 + 3 NA intron (NM_001348496, intron 3 of 23) MLT1D|LTR|ERVL-MaLR -61248 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 499-286 chr9 105222837 105223168 + 3 NA Intergenic L2b|LINE|L2 -21603 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 656-30 chr11 85895322 85895598 + 3 NA intron (NM_001286159, intron 6 of 10) intron (NM_001286159, intron 6 of 10) 40359 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 503-269 chr7 92910036 92910264 + 3 NA intron (NR_110086, intron 4 of 4) intron (NR_110086, intron 4 of 4) -73523 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 514-213 chr4 141459107 141459320 + 3 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -126596 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 931-11 chr19 46556056 46556649 + 3 NA intron (NM_001370550, intron 1 of 2) intron (NM_001370550, intron 1 of 2) 44564 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 480-156 chr2 124607263 124607439 + 3 NA intron (NM_130773, intron 11 of 23) MLT1F2|LTR|ERVL-MaLR 582064 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 1476-2 chr14 29293886 29294854 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -508583 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 555-119 chr21 28357811 28358061 + 3 NA Intergenic Intergenic -129269 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 614-107 chr5 148321654 148321949 + 3 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 9378 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 539-95 chr17_KI270730v1_random 82850 83156 + 3 NA NA (GAATG)n|Satellite|Satellite NA NA 287-78 chr11 4053843 4053967 + 3 NA intron (NM_001277962, intron 3 of 12) AluJo|SINE|Alu -40780 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 501-185 chr4 30861406 30861652 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 141160 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 342-266 chr2 212847063 212847231 + 3 NA Intergenic Intergenic 51816 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 445-32 chr11 25364654 25364841 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -824376 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 831-8 chr11 77362214 77362777 + 3 NA intron (NM_001128620, intron 5 of 15) MIR|SINE|MIR -60829 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 468-228 chr4 89713048 89713342 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -123206 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 407-2 chr1 18438285 18438504 + 3 NA Intergenic MIR|SINE|MIR -42536 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 954-4 chr10 118928831 118929277 + 3 NA Intergenic L1MD1|LINE|L1 -100660 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 887-28 chr6 145403969 145404330 + 3 NA Intergenic L1MA1|LINE|L1 282728 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 582-26 chr12 38652002 38652323 + 3 NA TTS (NM_153634) TTS (NM_153634) 253429 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 867-12 chr11 54868158 54868583 + 3 NA Intergenic ALR/Alpha|Satellite|centr 161538 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 517-126 chr2 51359843 51360120 + 3 NA intron (NR_135237, intron 3 of 10) L1PA5|LINE|L1 327380 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 544-28 chr10 48515742 48516007 + 3 NA intron (NR_144642, intron 3 of 9) intron (NR_144642, intron 3 of 9) -4285 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 459-133 chr2 39551652 39551874 + 3 NA intron (NR_037875, intron 5 of 5) MLT1J|LTR|ERVL-MaLR -113735 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 493-80 chr14 42650992 42651289 + 3 NA Intergenic Intergenic 1044284 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 525-160 chr3 83822871 83823166 + 3 NA Intergenic Intergenic 1046557 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 629-51 chr17 61044949 61045314 + 3 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 322573 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 461-179 chr3 167135464 167135694 + 3 NA Intergenic Intergenic 236896 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 452-276 chr8 124588311 124588628 + 3 NA intron (NM_001282971, intron 5 of 14) intron (NM_001282971, intron 5 of 14) 49346 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 474-55 chr12 8501183 8501402 + 3 NA Intergenic Intergenic -12211 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 583-20 chr10 90088131 90088418 + 3 NA Intergenic MER4-int|LTR|ERV1 -130901 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 485-3 chr1 37160552 37160770 + 3 NA promoter-TSS (NR_036217) promoter-TSS (NR_036217) -902 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 851-31 chr22 39796517 39797026 + 3 NA intron (NM_152512, intron 5 of 6) L1M2|LINE|L1 96989 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 675-19 chr12 31561790 31562203 + 3 NA intron (NM_001308339, intron 1 of 22) L2a|LINE|L2 -27927 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 632-126 chr9 71112269 71112571 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 9201 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 347-472 chr7 62865861 62866120 + 3 NA Intergenic ALR/Alpha|Satellite|centr 438066 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 331-217 chr18 12808084 12808259 + 3 NA intron (NM_080423, intron 7 of 8) AluJb|SINE|Alu 32791 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 508-66 chr15 67466007 67466227 + 3 NA intron (NM_001322473, intron 13 of 14) intron (NM_001322473, intron 13 of 14) 54856 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 1346-2 chr15 59227256 59228123 + 3 NA intron (NM_004998, intron 6 of 27) intron (NM_004998, intron 6 of 27) 20846 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 725-59 chr8 85395897 85396348 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -18009 NM_001738 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 642-97 chr5 162919254 162919645 + 3 NA Intergenic L1MB1|LINE|L1 -518122 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 526-253 chr8 135126797 135127067 + 3 NA Intergenic Intergenic -107199 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 622-102 chr4 177151963 177152260 + 3 NA Intergenic L1ME4b|LINE|L1 -157763 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 161-12 chr10 70819048 70819119 + 3 NA intron (NM_003901, intron 2 of 14) intron (NM_003901, intron 2 of 14) 3135 NM_003901 8879 Hs.499984 NM_003901 ENSG00000166224 SGPL1 NPHS14|S1PL|SPL sphingosine-1-phosphate lyase 1 protein-coding 500-284 chr8 26749813 26750112 + 3 NA intron (NM_001322503, intron 1 of 1) intron (NM_001322503, intron 1 of 1) 115693 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 707-30 chr14 98679316 98679697 + 3 NA Intergenic L1M3|LINE|L1 -32107 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 404-68 chr11 103974210 103974442 + 3 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -62314 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 796-10 chr11 133490310 133490823 + 3 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 41935 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 655-114 chr7 127122352 127122804 + 3 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -64394 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 410-313 chr8 117220413 117220572 + 3 NA Intergenic L1MEc|LINE|L1 85497 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 706-24 chr14 81061023 81061439 + 3 NA intron (NM_001142626, intron 1 of 8) intron (NM_001142626, intron 1 of 8) 105610 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 355-330 chr3 97383833 97383987 + 3 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -55697 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 505-147 chr2 78463215 78463467 + 3 NA Intergenic Intergenic -82190 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 486-101 chr15 87108057 87108237 + 3 NA Intergenic L1MA4A|LINE|L1 -119721 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 445-92 chr16 71227269 71227474 + 3 NA intron (NM_001198543, intron 1 of 18) L1PA5|LINE|L1 3351 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 508-231 chr8 31552378 31552634 + 3 NA Intergenic Intergenic -87246 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 521-205 chr5 142431093 142431346 + 3 NA intron (NR_120664, intron 3 of 3) L1MC4|LINE|L1 105926 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 554-158 chr4 63627304 63627642 + 3 NA Intergenic THE1A-int|LTR|ERVL-MaLR 781977 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 295-276 chr22 29948356 29948492 + 3 NA intron (NM_153051, intron 1 of 18) intron (NM_153051, intron 1 of 18) -58625 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 272-159 chr18 4656768 4656942 + 3 NA Intergenic Intergenic -201548 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 1379-6 chr2 98263561 98264223 + 3 NA intron (NM_001345864, intron 15 of 21) L1M3c|LINE|L1 -82263 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 742-52 chr3 29939301 29939588 + 3 NA intron (NM_001177711, intron 11 of 13) MER102c|DNA|hAT-Charlie -5288 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 493-116 chr18 6096268 6096522 + 3 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -160349 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 1084-3 chr10 86607642 86608266 + 3 NA Intergenic L1MEg|LINE|L1 -46593 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 497-154 chr20 42045511 42045779 + 3 NA Intergenic Intergenic -427268 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 897-23 chr2 130934929 130935470 + 3 NA intron (NM_001367493, intron 3 of 13) intron (NM_001367493, intron 3 of 13) 98285 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 311-217 chr18 62206566 62206703 + 3 NA intron (NR_144409, intron 1 of 31) intron (NR_144409, intron 1 of 31) 19379 NR_144408 57614 Hs.465323 NM_020854 ENSG00000134444 RELCH HsT3308|HsT885|KIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 433-191 chr4 30333304 30333501 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -386967 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 342-282 chr20 37477337 37477534 + 3 NA Intergenic Intergenic 42868 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 1022-16 chr3 170668608 170669250 + 3 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -82854 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 791-56 chr5 31327627 31327998 + 3 NA 3' UTR (NM_004932, exon 12 of 12) 3' UTR (NM_004932, exon 12 of 12) 134126 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 328-184 chr15 89007872 89008001 + 3 NA Intergenic HAL1ME|LINE|L1 -80520 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 369-134 chr15 58761384 58761532 + 3 NA Intergenic Intergenic 9516 NR_135474 101928725 Hs.572321 NR_135474 ENSG00000245975 LOC101928725 - uncharacterized LOC101928725 ncRNA 431-190 chr3 194920743 194920956 + 3 NA Intergenic L1MCa|LINE|L1 -152140 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 416-333 chr8 74618695 74618952 + 3 NA intron (NR_033830, intron 2 of 5) L1MA8|LINE|L1 18957 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 437-56 chr12 108502876 108503070 + 3 NA Intergenic L1MB3|LINE|L1 -12304 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 760-40 chr20 35526867 35527218 + 3 NA TTS (NM_001145350) TTS (NM_001145350) 2610 NM_001145350 140873 Hs.158680 NM_080828 ENSG00000125975 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 410-301 chr8 50734092 50734321 + 3 NA intron (NM_001287814, intron 16 of 16) intron (NM_001287814, intron 16 of 16) 570075 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 402-346 chr8 114608363 114608534 + 3 NA Intergenic Intergenic 1059565 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 353-420 chr5 112435509 112435729 + 3 NA Intergenic L2b|LINE|L2 16036 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 287-109 chr12 29504228 29504443 + 3 NA 3' UTR (NM_001193451, exon 18 of 18) 3' UTR (NM_001193451, exon 18 of 18) -4642 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 576-100 chr20 60595133 60595592 + 3 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 30800 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 395-219 chr3 48929978 48930223 + 3 NA intron (NM_001349209, intron 3 of 15) intron (NM_001349209, intron 3 of 15) -10715 NR_161301 646450 Hs.720727 NM_001123040 ENSG00000221883 ARIH2OS C3orf71 ariadne RBR E3 ubiquitin protein ligase 2 opposite strand ncRNA 390-120 chr15 98329179 98329339 + 3 NA intron (NR_146567, intron 1 of 2) intron (NR_146567, intron 1 of 2) 2299 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 875-43 chrX 95902838 95903421 + 3 NA Intergenic MIRb|SINE|MIR 434773 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 598-93 chr3 185857009 185857333 + 3 NA Intergenic L1MEf|LINE|L1 -32129 NM_006548 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 769-66 chr8 88506650 88507162 + 3 NA Intergenic L1MA9|LINE|L1 -179423 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 1813-3 chr8 134580065 134581124 + 3 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -17477 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 504-57 chr12 127795789 127796018 + 3 NA Intergenic L1M5|LINE|L1 -85714 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 265-132 chr16 8304510 8304617 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 285275 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 540-206 chr8 57885256 57885501 + 3 NA Intergenic Intergenic -92980 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 369-36 chr10 48269091 48269258 + 3 NA intron (NM_001018071, intron 1 of 28) L1ME3G|LINE|L1 5522 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 888-39 chr8 122747623 122748105 + 3 NA Intergenic MIR|SINE|MIR -33791 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 545-46 chr11 97617604 97617832 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 1109293 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 368-355 chr5 28146186 28146359 + 3 NA Intergenic L1MA10|LINE|L1 141393 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 679-4 chr1 65744411 65744656 + 3 NA Intergenic L1PA7|LINE|L1 -47977 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 241-260 chr4 38599591 38599717 + 3 NA Intergenic L1MEg|LINE|L1 35651 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 464-107 chr2 11020159 11020386 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR 108338 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 490-278 chr7 141516356 141516677 + 3 NA Intergenic Intergenic -34894 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 369-387 chr7 62703688 62703892 + 3 NA Intergenic ALR/Alpha|Satellite|centr 600266 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 516-205 chr5 41590338 41590588 + 3 NA Intergenic Intergenic -79862 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 387-165 chr2 34922407 34922634 + 3 NA Intergenic Intergenic 244963 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 534-247 chr8 27708265 27708501 + 3 NA Intergenic HAL1|LINE|L1 -6616 NR_037418 100500871 NR_037418 ENSG00000265075 MIR3622B - microRNA 3622b ncRNA 504-195 chr4 103601112 103601334 + 3 NA intron (NM_001059, intron 3 of 4) L1PA4|LINE|L1 118762 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 411-191 chr3 164946807 164946962 + 3 NA Intergenic AluJb|SINE|Alu -115404 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 1203-11 chr4 72959902 72960612 + 3 NA Intergenic L1PA15-16|LINE|L1 109459 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 649-71 chr3 81142722 81143088 + 3 NA Intergenic Intergenic 149037 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 515-2 chr1 34803917 34804165 + 3 NA Intergenic HAL1|LINE|L1 11042 NM_002060 2701 Hs.296310 NM_002060 ENSG00000187513 GJA4 CX37 gap junction protein alpha 4 protein-coding 858-21 chr18 77659856 77660215 + 3 NA Intergenic Intergenic 333692 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 503-151 chr2 80626103 80626333 + 3 NA intron (NM_001320810, intron 12 of 12) MLT1J|LTR|ERVL-MaLR 312839 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 726-74 chr7 145475410 145475783 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -639543 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 485-12 chr1 157836874 157837091 + 3 NA intron (NM_001347698, intron 2 of 5) AluSz|SINE|Alu 4826 NM_001347698 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 550-62 chr12 110996925 110997153 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -37126 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 730-36 chr20 16389099 16389605 + 3 NA intron (NM_001199866, intron 17 of 22) MER45A|DNA|hAT-Tip100 184096 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 350-200 chr19 36963046 36963191 + 3 NA intron (NM_001204839, intron 5 of 8) L1ME1|LINE|L1 46786 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 630-155 chrX 2953742 2954087 + 3 NA intron (NM_001369080, intron 5 of 11) AluJr|SINE|Alu 10539 NM_001282628 415 Hs.386975 NM_000047 ENSG00000157399 ARSE ASE|CDPX|CDPX1|CDPXR arylsulfatase E protein-coding 524-140 chr21 32925490 32925775 + 3 NA Intergenic L1M6B|LINE|L1 -33256 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 567-19 chr1 234777704 234777919 + 3 NA Intergenic AluJr|SINE|Alu -17755 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 569-56 chr14 32789496 32789820 + 3 NA intron (NM_004274, intron 12 of 13) L1PA10|LINE|L1 -149221 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 740-49 chr20 6425705 6426005 + 3 NA promoter-TSS (NR_109953) promoter-TSS (NR_109953) -877 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 676-15 chr10 11725286 11725637 + 3 NA Intergenic Intergenic -16921 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 1376-6 chr5 18069723 18070451 + 3 NA Intergenic Intergenic 262813 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 1006-14 chr19 50881509 50882076 + 3 NA TTS (NR_002948) TTS (NR_002948) 8353 NM_001002231 3817 Hs.515560 NM_005551 ENSG00000167751 KLK2 KLK2A2|hGK-1|hK2 kallikrein related peptidase 2 protein-coding 756-66 chr8 139450800 139451211 + 3 NA Intergenic AluJo|SINE|Alu 252118 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 390-323 chr6 52857167 52857340 + 3 NA Intergenic L1MB7|LINE|L1 -11158 NM_153699 221357 Hs.646984 NM_153699 ENSG00000182793 GSTA5 - glutathione S-transferase alpha 5 protein-coding 356-371 chr4 122373745 122373933 + 3 NA Intergenic Intergenic -5172 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 515-200 chr5 35507042 35507255 + 3 NA Intergenic L1PA13|LINE|L1 -110715 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 601-72 chr2 31745574 31745828 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 58279 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 368-401 chr6 126401083 126401250 + 3 NA intron (NR_104462, intron 2 of 3) L1MCa|LINE|L1 61051 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 573-31 chr10 125596341 125596677 + 3 NA intron (NM_001318133, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 22138 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 558-165 chr4 164024018 164024208 + 3 NA intron (NM_001166373, intron 2 of 7) L1PA16|LINE|L1 173598 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 406-240 chr5 122738523 122738700 + 3 NA Intergenic MIRb|SINE|MIR -8051 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 561-11 chr1 174969903 174970107 + 3 NA intron (NM_001366451, intron 8 of 12) intron (NM_001366451, intron 8 of 12) 5227 NM_001243764 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 472-161 chr2 106904004 106904178 + 3 NA Intergenic L1MDa|LINE|L1 -16982 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 689-21 chr12 129798868 129799324 + 3 NA intron (NM_133448, intron 1 of 8) AluSq4|SINE|Alu 104929 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 366-247 chr20 3470056 3470230 + 3 NA promoter-TSS (NM_139321) promoter-TSS (NM_139321) -875 NM_139322 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 250-9 chr1 85152907 85153001 + 3 NA Intergenic Intergenic 19160 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 484-67 chr14 79678845 79679163 + 3 NA intron (NM_004796, intron 14 of 16) intron (NM_004796, intron 14 of 16) 399624 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 350-267 chr20 6965419 6965569 + 3 NA Intergenic Intergenic 197808 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 403-53 chr11 74544811 74545064 + 3 NA Intergenic Intergenic -47645 NR_046409 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 435-238 chr8 80491268 80491462 + 3 NA intron (NM_001105539, intron 1 of 5) Tigger3c|DNA|TcMar-Tigger 5139 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 573-70 chr15 25926243 25926457 + 3 NA intron (NR_040082, intron 1 of 4) HERV35I-int|LTR|ERV1 23990 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 434-100 chr16 25274742 25275034 + 3 NA Intergenic AluYc|SINE|Alu -17043 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 718-26 chr14 86639332 86639782 + 3 NA Intergenic L1MB8|LINE|L1 -266221 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 702-79 chr5 39867771 39868172 + 3 NA Intergenic L2a|LINE|L2 -184320 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 421-296 chr8 79043845 79044020 + 3 NA Intergenic Intergenic 206403 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 882-37 chr5 30662432 30662905 + 3 NA Intergenic Intergenic -531018 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 336-227 chr18 57110516 57110729 + 3 NA Intergenic Intergenic -36465 NM_001257964 284257 Hs.127882 NM_001257964 ENSG00000228075 BOD1L2 BOD1P|FAM44C biorientation of chromosomes in cell division 1 like 2 protein-coding 759-46 chr22 33077077 33077382 + 3 NA Intergenic MIR|SINE|MIR -18848 NM_001135774 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 465-250 chr6 40311116 40311407 + 3 NA Intergenic Intergenic 44745 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 519-97 chr2 30011249 30011451 + 3 NA Intergenic Intergenic -89764 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 726-36 chr19 8811746 8812123 + 3 NA exon (NM_144693, exon 10 of 10) exon (NM_144693, exon 10 of 10) 10129 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 535-5 chr1 37119528 37119839 + 3 NA Intergenic Intergenic -41880 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 465-134 chr2 126459055 126459365 + 3 NA Intergenic Intergenic -196725 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 321-355 chr22 47438487 47438631 + 3 NA Intergenic MER65A|LTR|ERV1 48552 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 473-258 chr7 17269858 17270087 + 3 NA Intergenic L1M2|LINE|L1 -28680 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 485-263 chr7 41679494 41679750 + 3 NA Intergenic Intergenic -14297 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 404-125 chr16 80292759 80292942 + 3 NA intron (NR_120307, intron 2 of 5) Charlie1a|DNA|hAT-Charlie -247884 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 443-260 chr6 62240736 62240964 + 3 NA intron (NR_146874, intron 1 of 13) L1MC4|LINE|L1 45375 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 729-37 chr2 61984969 61985382 + 3 NA intron (NM_152516, intron 1 of 2) AluY|SINE|Alu 79533 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 521-63 chr12 28282712 28283114 + 3 NA intron (NM_001352082, intron 4 of 13) L1PB3|LINE|L1 -92175 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 398-340 chr8 508977 509187 + 3 NA intron (NM_001256113, intron 1 of 3) THE1C-int|LTR|ERVL-MaLR 6670 NM_001369716 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 648-122 chr5 166778440 166778726 + 3 NA Intergenic AluJo|SINE|Alu 147787 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 1209-4 chr18 2217865 2218858 + 3 NA Intergenic L2a|LINE|L2 353144 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 428-324 chr9 136562803 136562987 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 15053 NR_121577 101928483 Hs.170035 NR_121577 NALT1 LINC01573|MIR4674HG|NALT|TCONS_l2_00029132 NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1 ncRNA 658-98 chr5 99453664 99454051 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 -80133 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 655-118 chr8 26535060 26535388 + 3 NA intron (NM_001197293, intron 1 of 13) MLT1A|LTR|ERVL-MaLR 21193 NM_001197293 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 399-207 chr3 60558941 60559106 + 3 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) 58847 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 925-29 chr6 151524152 151524745 + 3 NA intron (NM_025059, intron 1 of 10) intron (NM_025059, intron 1 of 10) 30431 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 570-58 chr14 45343855 45344104 + 3 NA Intergenic L2a|LINE|L2 -90777 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 499-138 chr2 222784553 222784727 + 3 NA Intergenic Intergenic -76396 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 839-50 chr8 85061980 85062392 + 3 NA Intergenic L2a|LINE|L2 -45052 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 432-62 chr12 41544503 41544683 + 3 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 106854 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 525-21 chr10 6909668 6909843 + 3 NA Intergenic Intergenic 130157 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 567-74 chr18 2180334 2180544 + 3 NA Intergenic L1MC1|LINE|L1 391066 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 477-23 chr1 179496096 179496355 + 3 NA intron (NM_144696, intron 20 of 25) L1ME1|LINE|L1 79723 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 659-112 chr8 59880277 59880556 + 3 NA Intergenic L1MC3|LINE|L1 400984 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 477-199 chr3 50891606 50891826 + 3 NA intron (NM_004947, intron 4 of 52) intron (NM_004947, intron 4 of 52) 216636 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 709-21 chr14 45791875 45792251 + 3 NA Intergenic LTR25-int|LTR|ERV1 -76461 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 484-23 chr1 244371522 244371795 + 3 NA intron (NM_001276349, intron 2 of 3) intron (NM_001276349, intron 2 of 3) 19023 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 639-73 chr20 42054650 42054953 + 3 NA Intergenic Intergenic -436424 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 512-73 chr13 107011162 107011456 + 3 NA Intergenic L1MB7|LINE|L1 309654 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 459-89 chr14 87535947 87536135 + 3 NA Intergenic Intergenic 119253 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 837-38 chr5 170061202 170061612 + 3 NA intron (NR_156756, intron 45 of 52) intron (NR_156756, intron 45 of 52) 32919 NR_039609 100616498 NR_039609 ENSG00000263831 MIR378E mir-378e microRNA 378e ncRNA 456-301 chr7 54965706 54965920 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -53204 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 418-168 chr3 144408705 144408894 + 3 NA Intergenic Intergenic 435718 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 457-94 chr17 69408309 69408558 + 3 NA Intergenic Intergenic -6264 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 463-3 chr1 20014773 20015072 + 3 NA Intergenic L1M1|LINE|L1 -34488 NM_001161727 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 677-83 chr8 98643761 98644150 + 3 NA intron (NM_001256313, intron 4 of 8) AluJr|SINE|Alu 181716 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 454-230 chr4 61990635 61990849 + 3 NA intron (NM_001371343, intron 18 of 23) intron (NM_001371343, intron 18 of 23) 171023 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 1356-4 chr8 129791088 129791819 + 3 NA Intergenic L1MA3|LINE|L1 -4829 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 495-251 chr8 75213601 75213833 + 3 NA Intergenic Intergenic 64764 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 814-18 chr13 27694676 27695109 + 3 NA Intergenic L1PA16|LINE|L1 73000 NM_152705 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 438-109 chr2 15873171 15873367 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -47130 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 494-196 chr4 26114739 26114980 + 3 NA Intergenic MER63B|DNA|hAT-Blackjack 200667 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 322-455 chr6 51713021 51713222 + 3 NA intron (NM_138694, intron 60 of 66) (TAT)n|Simple_repeat|Simple_repeat 91251 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 430-5 chr1 96922634 96922824 + 3 NA Intergenic L1MEi|LINE|L1 -173194 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 345-391 chr4 94634899 94635085 + 3 NA intron (NM_006457, intron 8 of 12) intron (NM_006457, intron 8 of 12) 122541 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 574-144 chr6 414223 414582 + 3 NA Intergenic LTR49-int|LTR|ERV1 22650 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 680-96 chr5 52564621 52565016 + 3 NA Intergenic Intergenic -223098 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 199-14 chr1 191098241 191098332 + 3 NA Intergenic L1MCb|LINE|L1 130212 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 357-486 chr9 93147514 93147724 + 3 NA Intergenic Intergenic -13368 NM_004148 4814 Hs.494457 NM_004148 ENSG00000131669 NINJ1 NIN1|NINJURIN ninjurin 1 protein-coding 370-237 chr2 85843779 85843916 + 3 NA intron (NM_001363847, intron 5 of 5) intron (NM_001363847, intron 5 of 5) 10324 NM_001354248 8869 Hs.415117 NM_003896 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 523-189 chr3 155086509 155086723 + 3 NA intron (NM_000902, intron 3 of 22) intron (NM_000902, intron 3 of 22) 6605 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 325-66 chr10 66650434 66650616 + 3 NA intron (NM_001127384, intron 9 of 17) LTR12C|LTR|ERV1 -275511 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 304-548 chr9 81469598 81469775 + 3 NA Intergenic L2a|LINE|L2 219849 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 465-32 chr10 83937037 83937252 + 3 NA Intergenic Intergenic -202365 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 501-102 chr2 66595424 66595722 + 3 NA intron (NR_110156, intron 1 of 5) L1MC4|LINE|L1 21543 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 605-96 chr6 9381872 9382216 + 3 NA Intergenic Intergenic 729835 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 410-153 chr2 168524387 168524630 + 3 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) -58435 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 516-204 chr5 35432766 35433061 + 3 NA Intergenic Intergenic -184950 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 317-131 chr13 97533460 97533697 + 3 NA Intergenic Intergenic 99409 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 363-137 chr14 56987911 56988129 + 3 NA Intergenic Intergenic 174862 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 544-3 chr1 14329869 14330206 + 3 NA Intergenic Intergenic 89936 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 396-100 chr13 79771865 79772096 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -32406 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 524-248 chr8 26928376 26928710 + 3 NA Intergenic L1MEc|LINE|L1 -61265 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 482-91 chr16 68437104 68437285 + 3 NA intron (NM_018667, intron 1 of 8) L2b|LINE|L2 11314 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 543-192 chr4 180143144 180143350 + 3 NA Intergenic L1MC5|LINE|L1 1015902 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 444-238 chr7 33302456 33302622 + 3 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 172975 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 530-222 chr6 160330623 160330940 + 3 NA Intergenic Intergenic -17597 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 629-61 chr2 56922240 56922627 + 3 NA Intergenic Intergenic -736663 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 802-3 chr1 176115591 176116105 + 3 NA intron (NM_022457, intron 9 of 19) intron (NM_022457, intron 9 of 19) 91396 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 608-34 chr12 118925820 118926121 + 3 NA Intergenic Intergenic -55571 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 628-102 chr5 36397646 36397906 + 3 NA Intergenic Intergenic -95874 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 395-51 chr11 22991564 22991775 + 3 NA Intergenic Intergenic -131195 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 974-18 chr7 64705538 64706129 + 3 NA intron (NM_016220, intron 6 of 6) intron (NM_016220, intron 6 of 6) 26769 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 732-19 chr11 110971550 110971947 + 3 NA Intergenic Intergenic 125570 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 502-20 chr1 212221629 212221927 + 3 NA intron (NR_125982, intron 2 of 3) intron (NR_125982, intron 2 of 3) 12958 NR_125983 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 686-17 chr12 2426425 2426918 + 3 NA intron (NM_199460, intron 3 of 49).2 MLT1H|LTR|ERVL-MaLR 156895 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 1059-8 chr16 6514049 6514632 + 3 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -259469 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 579-30 chr13 53553812 53554155 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -261436 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 406-59 chr12 42956334 42956543 + 3 NA Intergenic Intergenic -198877 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 621-86 chr4 87282754 87283050 + 3 NA Intergenic L1MB2|LINE|L1 17681 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 454-327 chr8 139765277 139765522 + 3 NA intron (NM_001160372, intron 21 of 22) Charlie4z|DNA|hAT-Charlie -62276 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 853-18 chr2 156380266 156380713 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -38369 NR_147695 440918 Hs.641142 NR_147695 FLJ46875 - uncharacterized LOC440918 ncRNA 446-124 chr18 1151931 1152167 + 3 NA Intergenic L1MA2|LINE|L1 207580 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 784-44 chr4 12425097 12425448 + 3 NA Intergenic MER4-int|LTR|ERV1 201821 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 470-262 chr8 52909539 52909743 + 3 NA Intergenic Intergenic -30267 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 579-85 chr20 40469237 40469616 + 3 NA Intergenic Intergenic 219810 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 262-122 chr14 49522797 49522962 + 3 NA Intergenic Intergenic 63501 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 454-181 chr2 189916605 189916780 + 3 NA Intergenic L1MD1|LINE|L1 132242 NR_110332 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 675-55 chr22 49381146 49381541 + 3 NA Intergenic Intergenic 162123 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 443-37 chr10 56797661 56797823 + 3 NA Intergenic Intergenic -436469 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 554-59 chr12 41360473 41360746 + 3 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -77130 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 674-50 chr20 43037745 43038053 + 3 NA intron (NM_133170, intron 1 of 31) LTR16A2|LTR|ERVL 69156 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 601-136 chr7 23743279 23743636 + 3 NA intron (NM_031414, intron 8 of 23) L1M2|LINE|L1 33238 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 329-251 chr19 51884711 51884857 + 3 NA intron (NM_001370450, intron 1 of 5) L1M5|LINE|L1 3152 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 743-75 chr6 130534309 130534725 + 3 NA Intergenic MamGypsy2-I|LTR|Gypsy 97400 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 331-491 chr7 36576572 36576803 + 3 NA intron (NM_001177507, intron 11 of 19) intron (NM_001177507, intron 11 of 19) 23433 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 361-458 chr8 119108209 119108411 + 3 NA 3' UTR (NM_006438, exon 6 of 6) 3' UTR (NM_006438, exon 6 of 6) -39528 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 943-24 chr7 7446232 7446805 + 3 NA intron (NM_001037763, intron 18 of 34) L1M5|LINE|L1 89355 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 720-56 chr21 31057943 31058324 + 3 NA Intergenic Intergenic -19657 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 546-90 chr17 77673725 77673949 + 3 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat 54722 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 727-65 chr5 107105878 107106279 + 3 NA Intergenic Intergenic -95064 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 534-75 chr14 62800569 62800833 + 3 NA intron (NM_139318, intron 9 of 10) intron (NM_139318, intron 9 of 10) 244757 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 272-360 chr5 128135634 128135737 + 3 NA intron (NM_001046, intron 6 of 26) intron (NM_001046, intron 6 of 26) 51919 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 926-29 chr9 34356417 34356890 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger 20245 NM_020702 57462 Hs.522083 NM_020702 ENSG00000164976 MYORG IBGC7|KIAA1161|NET37 myogenesis regulating glycosidase (putative) protein-coding 490-28 chr1 185850833 185851099 + 3 NA intron (NM_031935, intron 2 of 106) intron (NM_031935, intron 2 of 106) 116575 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 469-203 chr4 105641299 105641515 + 3 NA intron (NM_001242729, intron 5 of 13) intron (NM_001242729, intron 5 of 13) 67282 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 591-21 chr11 20901389 20901788 + 3 NA intron (NM_201551, intron 5 of 18) L1ME3C|LINE|L1 232002 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 273-325 chr4 64689016 64689182 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -279639 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 503-297 chr8 144566884 144567143 + 3 NA intron (NM_025251, intron 2 of 10) L1ME1|LINE|L1 -37902 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 555-68 chr16 82872546 82872771 + 3 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 99339 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 536-90 chr16 62801755 62802106 + 3 NA Intergenic Intergenic -765492 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 979 chr1 50266479 50267003 + 3 NA Intergenic MIRc|SINE|MIR 156702 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 794-28 chr21 22033555 22033955 + 3 NA intron (NR_109959, intron 4 of 5) ERV3-16A3_I-int|LTR|ERVL 64704 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 617-116 chr5 174870185 174870595 + 3 NA Intergenic AluSz6|SINE|Alu 118656 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 554-37 chr10 98540920 98541133 + 3 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -94063 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 514-46 chr11 29699377 29699707 + 3 NA Intergenic MER57E1|LTR|ERV1 80740 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 382-308 chr4 137969556 137969815 + 3 NA Intergenic LTR16A1|LTR|ERVL -119329 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 440-138 chr20 23551340 23551566 + 3 NA Intergenic Intergenic 17031 NM_080610 128821 Hs.121554 NM_080610 ENSG00000101435 CST9L CTES7B|bA218C14.1 cystatin 9 like protein-coding 608-19 chr10 107092928 107093352 + 3 NA intron (NM_001206569, intron 1 of 25) MIR|SINE|MIR 71566 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 370-146 chr14 70169184 70169447 + 3 NA intron (NM_033262, intron 1 of 7) intron (NM_033262, intron 1 of 7) -17793 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 517-230 chr5 169638228 169638552 + 3 NA intron (NR_156756, intron 1 of 52) intron (NR_156756, intron 1 of 52) 1115 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 659-27 chr12 133191487 133191848 + 3 NA intron (NM_152943, intron 4 of 6) intron (NM_152943, intron 4 of 6) 10172 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 438-275 chr8 90201432 90201705 + 3 NA Intergenic Intergenic -19920 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 405-347 chr9 92971003 92971183 + 3 NA intron (NM_001369951, intron 1 of 17) MLT1B|LTR|ERVL-MaLR -3343 NM_033086 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 387-106 chr14 62262459 62262604 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -122558 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 337-116 chr12 41006529 41006701 + 3 NA intron (NM_001843, intron 17 of 23) intron (NM_001843, intron 17 of 23) 98258 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 490-281 chr8 19419560 19419809 + 3 NA intron (NM_001130518, intron 7 of 9) intron (NM_001130518, intron 7 of 9) 105708 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 862-22 chr21 31419108 31419622 + 3 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -75011 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 795-27 chr19 12466217 12466589 + 3 NA intron (NM_152601, intron 3 of 3) intron (NM_152601, intron 3 of 3) 18413 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 514-121 chr17 71492371 71492567 + 3 NA Intergenic Intergenic -290290 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 485-294 chr8 119343296 119343615 + 3 NA Intergenic MIR|SINE|MIR 18284 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 430-12 chr1 163647450 163647628 + 3 NA Intergenic Intergenic -224348 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 220-187 chr2 179520912 179521052 + 3 NA intron (NM_001352816, intron 3 of 8) intron (NM_001352816, intron 3 of 8) 41606 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 382-48 chr10 105359444 105359666 + 3 NA Intergenic Intergenic 460778 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 458-69 chr14 44784688 44784976 + 3 NA intron (NR_146457, intron 2 of 4) L2c|LINE|L2 14294 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 584-70 chr2 49320082 49320393 + 3 NA Intergenic L1M4b|LINE|L1 -165710 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 709-63 chr3 165297448 165297796 + 3 NA intron (NR_125764, intron 1 of 5) MLT2B3|LTR|ERVL 90662 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 578-129 chr4 58543562 58543848 + 3 NA Intergenic Intergenic -7377 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 480-171 chr20 8889497 8889702 + 3 NA Intergenic AluJo|SINE|Alu 58414 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 381-245 chr3 36863361 36863572 + 3 NA intron (NM_001329998, intron 10 of 23) intron (NM_001329998, intron 10 of 23) -40966 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 488-251 chr6 167982478 167982749 + 3 NA Intergenic L1MB7|LINE|L1 -5674 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 278-322 chr4 165947660 165947775 + 3 NA intron (NM_001204760, intron 1 of 9) MLT1E2-int|LTR|ERVL-MaLR 74480 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 468-142 chr2 60616449 60616735 + 3 NA Intergenic Intergenic -62938 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 155-19 chr10 9047371 9047436 + 3 NA Intergenic L1MC4a|LINE|L1 149414 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 368-476 chr9 20359402 20359575 + 3 NA intron (NM_001286691, intron 8 of 10) intron (NM_001286691, intron 8 of 10) 51750 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 578-144 chr5 122931406 122931769 + 3 NA intron (NM_014035, intron 1 of 6) intron (NM_014035, intron 1 of 6) 85974 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 331-71 chr10 113316290 113316423 + 3 NA Intergenic MIR|SINE|MIR 187085 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 805-25 chr20 52397548 52398097 + 3 NA Intergenic LTR16A2|LTR|ERVL -205837 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 439-74 chr12 66553108 66553303 + 3 NA intron (NM_001366722, intron 2 of 24) intron (NM_001366722, intron 2 of 24) 125871 NM_001178074 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 247-300 chr4 75719421 75719551 + 3 NA Intergenic MIR|SINE|MIR -5036 NM_003715 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 612-129 chr7 46262714 46263034 + 3 NA Intergenic Intergenic -341602 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 667-35 chr16 35456267 35456771 + 3 NA Intergenic Intergenic 24077 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 857-13 chr11 80551117 80551503 + 3 NA Intergenic L1ME2z|LINE|L1 211493 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 599-27 chr12 9588579 9588800 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR 19227 NM_002258 3820 Hs.169824 NM_002258 ENSG00000111796 KLRB1 CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A killer cell lectin like receptor B1 protein-coding 582-74 chr2 98322355 98322557 + 3 NA Intergenic Intergenic -23699 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 506-135 chr2 48902628 48902886 + 3 NA Intergenic LTR78|LTR|ERV1 -147033 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 333-423 chr4 182023889 182024063 + 3 NA Intergenic Intergenic 120539 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 576-158 chr7 52218712 52219133 + 3 NA Intergenic Intergenic -816711 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 422-27 chr10 17902739 17902972 + 3 NA intron (NM_002438, intron 26 of 29) U4|snRNA|snRNA -48984 NM_001282734 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 748-42 chr18 69263740 69264155 + 3 NA Intergenic Intergenic -136941 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 319-33 chr1 188777279 188777428 + 3 NA Intergenic L2a|LINE|L2 1333725 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 504-236 chr7 3339609 3339806 + 3 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 38455 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 543-196 chr5 23569176 23569502 + 3 NA Intergenic Intergenic 61684 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 337-163 chr14 84420031 84420204 + 3 NA Intergenic Intergenic -851815 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 472-113 chr16 71173358 71173648 + 3 NA intron (NM_017558, intron 5 of 19) intron (NM_017558, intron 5 of 19) 57219 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 352-215 chr2 8911417 8911633 + 3 NA intron (NR_135605, intron 1 of 11) MSTB1|LTR|ERVL-MaLR -73912 NM_001348738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 423-211 chr5 7532839 7533012 + 3 NA intron (NM_020546, intron 3 of 24) MIR|SINE|MIR 136787 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 651-123 chr8 127775825 127776168 + 3 NA Intergenic AluJb|SINE|Alu -18537 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 366-59 chr10 90716209 90716353 + 3 NA Intergenic Intergenic 141758 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 507-18 chr1 191102379 191102589 + 3 NA Intergenic Intergenic 126014 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 493-23 chr10 8742794 8743077 + 3 NA Intergenic Intergenic -148544 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 363-428 chr8 26791598 26791736 + 3 NA intron (NM_001322504, intron 1 of 1) intron (NM_001322504, intron 1 of 1) 73988 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 516-58 chr13 25955073 25955285 + 3 NA intron (NM_016529, intron 33 of 36) L1PA7|LINE|L1 95881 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 490-83 chr14 29445788 29446033 + 3 NA Intergenic Intergenic 481186 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 609-58 chr2 83411322 83411564 + 3 NA Intergenic Intergenic -111371 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 241-171 chr2 2526147 2526270 + 3 NA Intergenic Intergenic -194933 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 342-328 chr3 102993546 102993763 + 3 NA Intergenic L1MEc|LINE|L1 530462 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 446-77 chr12 46418475 46418748 + 3 NA intron (NR_125381, intron 2 of 2) L1PA17|LINE|L1 34504 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 682-13 chr10 129182730 129183174 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 270119 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 439-204 chr4 57852442 57852688 + 3 NA Intergenic Intergenic 426693 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 950-26 chr6 127028451 127028894 + 3 NA Intergenic Intergenic -89999 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 477-20 chr1 168854777 168854994 + 3 NA Intergenic L1MEg|LINE|L1 67944 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 371-183 chr2 121158297 121158440 + 3 NA Intergenic L1MDa|LINE|L1 126834 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 458-152 chr2 206374407 206374651 + 3 NA Intergenic L1MA7|LINE|L1 -69003 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 670-57 chr2 29649316 29649720 + 3 NA intron (NM_004304, intron 3 of 28) HAL1|LINE|L1 -174141 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 796-44 chr5 46311095 46311566 + 3 NA Intergenic ALR/Alpha|Satellite|centr -614950 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 460-41 chr11 11202353 11202546 + 3 NA Intergenic Intergenic 150801 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 815-23 chr19 40046148 40046665 + 3 NA intron (NM_001005851, intron 4 of 4) intron (NM_001005851, intron 4 of 4) 9825 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 570-172 chr6 77604460 77604686 + 3 NA Intergenic Intergenic -45701 NM_001282136 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 475-62 chr12 54928269 54928482 + 3 NA Intergenic Intergenic 45357 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 621-130 chr8 113506869 113507207 + 3 NA Intergenic LTR54|LTR|ERV1 -70099 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 383-407 chr8 140191964 140192127 + 3 NA intron (NM_001160372, intron 17 of 22) MIRb|SINE|MIR -91510 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 557-104 chr2 116986732 116986980 + 3 NA Intergenic L1PB1|LINE|L1 -827835 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 261-369 chr8 46161676 46161828 + 3 NA Intergenic ALR/Alpha|Satellite|centr 455891 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 361-443 chr8 82155557 82155714 + 3 NA Intergenic L1MB8|LINE|L1 -313349 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 705-44 chr18 43487815 43488145 + 3 NA Intergenic Intergenic -210490 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 532-249 chr7 63217354 63217679 + 3 NA Intergenic L1ME5|LINE|L1 86540 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 278-84 chr12 129421337 129421478 + 3 NA intron (NM_133448, intron 3 of 8) MER20|DNA|hAT-Charlie 212806 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 691-92 chr8 137777473 137777769 + 3 NA Intergenic L1MA10|LINE|L1 305924 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 575-58 chr15 27173870 27174203 + 3 NA intron (NM_001270873, intron 3 of 5) L1MC5a|LINE|L1 -12717 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 392-68 chr12 80233810 80233947 + 3 NA intron (NM_001368062, intron 14 of 62) MIRb|SINE|MIR 24425 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 480-187 chr3 63067429 63067696 + 3 NA Intergenic Intergenic -35126 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 545-215 chr6 163025339 163025647 + 3 NA intron (NM_001080379, intron 2 of 4) L1PA16|LINE|L1 28668 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 432-133 chr2 104262109 104262391 + 3 NA Intergenic L1MA9|LINE|L1 146082 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 576-3 chr1 80105822 80106197 + 3 NA Intergenic Intergenic -429746 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 749-17 chr10 62775683 62776116 + 3 NA Intergenic Intergenic -28821 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 410-101 chr16 50411718 50411946 + 3 NA Intergenic L1MB5|LINE|L1 -16699 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 405-6 chr1 77495991 77496219 + 3 NA intron (NM_012093, intron 10 of 13) L2c|LINE|L2 186553 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 229-325 chr5 161052535 161052635 + 3 NA Intergenic MIRc|SINE|MIR -113959 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 321-264 chr19 44097122 44097292 + 3 NA intron (NM_013398, intron 2 of 5) intron (NM_013398, intron 2 of 5) 2846 NM_001321645 7767 Hs.585869 NM_013398 ENSG00000267680 ZNF224 BMZF-2|BMZF2|KOX22|ZNF233|ZNF255|ZNF27 zinc finger protein 224 protein-coding 454-286 chr7 25944535 25944710 + 3 NA Intergenic Kanga1d|DNA|TcMar-Tc2 5364 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 424-96 chr17 54212226 54212420 + 3 NA Intergenic Intergenic 389396 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 494-275 chr7 133898858 133899054 + 3 NA intron (NM_021807, intron 12 of 17) AluSx|SINE|Alu -74068 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 1518 chr10 107151785 107152638 + 3 NA intron (NM_001206569, intron 1 of 25) THE1C-int|LTR|ERVL-MaLR 12495 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 1168 chr17 33001843 33002598 + 3 NA Intergenic L2a|LINE|L2 9369 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 597-79 chr2 167485348 167485593 + 3 NA Intergenic Intergenic 298098 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 445-88 chr16 49948585 49948895 + 3 NA Intergenic L1ME2|LINE|L1 -76466 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 640-47 chr16 75150404 75150811 + 3 NA intron (NM_001318475, intron 1 of 3) L1MD|LINE|L1 1556 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 401-258 chr5 53050752 53050984 + 3 NA intron (NR_073106, intron 6 of 29) intron (NR_073106, intron 6 of 29) 58889 NM_004531 4338 Hs.163645 NM_004531 ENSG00000164172 MOCS2 MCBPE|MOCO1|MOCODB|MPTS molybdenum cofactor synthesis 2 protein-coding 761-45 chr3 118029635 118030164 + 3 NA Intergenic L1MA1|LINE|L1 -338974 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 556-142 chr3 78493966 78494189 + 3 NA Intergenic Intergenic -445114 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 421-72 chr13 100012680 100012892 + 3 NA Intergenic AluSq|SINE|Alu -14877 NR_047483 100861542 Hs.508571 NR_047483 ENSG00000260738 LINC00554 lncZic2 long intergenic non-protein coding RNA 554 ncRNA 910-37 chr7 145286687 145287032 + 3 NA Intergenic Intergenic -450806 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 572-155 chr6 94803766 94804132 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 773502 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 759-30 chr18 62413658 62414219 + 3 NA Intergenic Intergenic 88628 NM_001278268 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 904-12 chr13 83537371 83538004 + 3 NA Intergenic Intergenic 344706 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 460-287 chr8 95454001 95454240 + 3 NA intron (NR_038207, intron 2 of 2) L1MEj|LINE|L1 -184919 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 528-184 chr4 101081266 101081576 + 3 NA intron (NM_001130691, intron 7 of 12) intron (NM_001130691, intron 7 of 12) 159451 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 666-100 chr5 140757889 140758290 + 3 NA Intergenic L1MC4|LINE|L1 -28047 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 601-47 chr16 17432230 17432552 + 3 NA intron (NM_022166, intron 1 of 11) L1MB8|LINE|L1 38569 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 724-23 chr16 77105644 77106047 + 3 NA Intergenic LTR52|LTR|ERVL -85345 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 438-65 chr12 42417710 42417885 + 3 NA intron (NM_016488, intron 9 of 12) intron (NM_016488, intron 9 of 12) 65818 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 729-11 chr10 123957307 123957728 + 3 NA Intergenic MER31-int|LTR|ERV1 -65710 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 644-42 chr2 100502427 100502713 + 3 NA Intergenic L1M4b|LINE|L1 32088 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 693-105 chr8 102935573 102935963 + 3 NA intron (NR_126339, intron 2 of 2) intron (NR_126339, intron 2 of 2) 71497 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 449-53 chr12 39930791 39931092 + 3 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 175140 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 949-3 chr12 118635829 118636259 + 3 NA Intergenic L2c|LINE|L2 125635 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 823-13 chr14 79201789 79202281 + 3 NA TTS (NR_135159) TTS (NR_135159) 2053 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 446-218 chr4 82098554 82098793 + 3 NA Intergenic Intergenic 275318 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 732-3 chr1 154075281 154075698 + 3 NA intron (NM_001159484, intron 16 of 37) L1MB7|LINE|L1 29103 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 689-11 chr10 43680817 43681295 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -32175 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 513-42 chr11 29815246 29815456 + 3 NA Intergenic L1MA1|LINE|L1 167042 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 621-4 chr1 98715098 98715388 + 3 NA intron (NR_033716, intron 8 of 8) L1MC4|LINE|L1 53522 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 525-13 chr1 163235371 163235549 + 3 NA intron (NM_001254748, intron 2 of 5) MLT1G1-int|LTR|ERVL-MaLR -32544 NM_001254749 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 349-111 chr12 12868304 12868481 + 3 NA Intergenic LTR41B|LTR|ERVL -7085 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 398-259 chr5 7496705 7497002 + 3 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 100715 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 527-73 chr14 28286729 28287039 + 3 NA Intergenic MIRb|SINE|MIR 478435 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 505-87 chr14 71078561 71078829 + 3 NA intron (NM_014982, intron 28 of 35) L1MEc|LINE|L1 171236 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 517-301 chrX 70018594 70018810 + 3 NA intron (NM_001005609, intron 2 of 7) L1PB3|LINE|L1 -4155 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 539-211 chr8 128389415 128389602 + 3 NA Intergenic Intergenic 175171 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 596-108 chr20 1823695 1824046 + 3 NA Intergenic MIRc|SINE|MIR -44124 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 543-250 chr8 124006692 124006984 + 3 NA intron (NR_040044, intron 4 of 5) intron (NR_040044, intron 4 of 5) 33944 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 325-103 chr11 43295400 43295660 + 3 NA Intergenic L1MA4A|LINE|L1 -16466 NM_001243747 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 449-76 chr14 47341361 47341520 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 1806 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 622-42 chr17 57219889 57220123 + 3 NA Intergenic AluJo|SINE|Alu -35845 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 487-91 chr14 79149355 79149525 + 3 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -50542 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 580-157 chr5 118646291 118646700 + 3 NA Intergenic L2a|LINE|L2 50307 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 374-278 chr4 62618170 62618323 + 3 NA Intergenic Intergenic -456481 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 421-35 chr11 15126474 15126674 + 3 NA intron (NM_001042536, intron 1 of 12) MIR3|SINE|MIR 11651 NM_001042536 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 586-126 chr5 141429502 141429785 + 3 NA promoter-TSS (NM_003735) promoter-TSS (NM_003735) -864 NM_003735 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 915-3 chr11 31301875 31302262 + 3 NA intron (NM_181807, intron 6 of 8) intron (NM_181807, intron 6 of 8) 67671 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 535-58 chr12 82408693 82409099 + 3 NA intron (NR_144941, intron 6 of 11) intron (NR_144941, intron 6 of 11) -50091 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 909-30 chr8 134180085 134180461 + 3 NA Intergenic L1M4c|LINE|L1 293777 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 434-194 chr3 135638295 135638491 + 3 NA Intergenic Intergenic -327335 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 387-294 chr5 118091038 118091219 + 3 NA intron (NR_104997, intron 2 of 2) L1MCa|LINE|L1 -191446 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 455-74 chr14 70984727 70985003 + 3 NA intron (NM_001308160, intron 6 of 33) intron (NM_001308160, intron 6 of 33) 77406 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 302-420 chr7 95172490 95172654 + 3 NA intron (NM_017650, intron 5 of 15) L1ME1|LINE|L1 151960 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 715-84 chr7 72382702 72383192 + 3 NA intron (NM_001363460, intron 1 of 5) AluSc|SINE|Alu 29391 NM_031468 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 486-111 chr17 34771038 34771230 + 3 NA Intergenic MER20B|DNA|hAT-Charlie 190326 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 586-13 chr1 211800176 211800542 + 3 NA intron (NM_014873, intron 2 of 7) L2|LINE|L2 -29278 NR_135818 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 649-98 chr6 130490542 130490872 + 3 NA Intergenic L1PA11|LINE|L1 53590 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 525-34 chr10 113417519 113417855 + 3 NA Intergenic MIRb|SINE|MIR -133144 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 487-53 chr11 15442418 15442760 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -201296 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 574-94 chr20 42119197 42119425 + 3 NA intron (NM_133170, intron 21 of 31) L1ME4a|LINE|L1 -500934 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 1084-5 chr12 58678582 58679172 + 3 NA intron (NR_120452, intron 1 of 7) L1MA4A|LINE|L1 87175 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 813-5 chr11 14679477 14679822 + 3 NA intron (NM_000922, intron 1 of 15) MER51-int|LTR|ERV1 35845 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 236-169 chr2 73911811 73911930 + 3 NA intron (NM_001615, intron 5 of 8) intron (NM_001615, intron 5 of 8) -14956 NR_134895 1716 Hs.469022 NM_001929 ENSG00000114956 DGUOK MTDPS3|NCPH|PEOB4|dGK deoxyguanosine kinase protein-coding 564-176 chr6 138324641 138324859 + 3 NA intron (NM_020340, intron 31 of 33) L2c|LINE|L2 -52893 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 609-135 chr8 84902694 84902992 + 3 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) 196916 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 460-178 chr20 51362120 51362285 + 3 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 90775 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 377-50 chr10 83757381 83757595 + 3 NA Intergenic L1M2b|LINE|L1 -80399 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 522-54 chr11 100107632 100107835 + 3 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 551588 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 488-171 chr3 52693884 52694096 + 3 NA TTS (NM_001278280) TTS (NM_001278280) 1254 NR_003057 692109 NR_003057 ENSG00000212452 SNORD69 HBII-210 small nucleolar RNA, C/D box 69 snoRNA 1099-16 chr21 30512076 30512660 + 3 NA Intergenic L1M5|LINE|L1 -10227 NM_181611 337972 Hs.553694 NM_181611 ENSG00000186977 KRTAP19-5 KAP19.5 keratin associated protein 19-5 protein-coding 461-27 chr10 22070312 22070521 + 3 NA Intergenic Intergenic -66686 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 494-134 chr2 115553532 115553783 + 3 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 209842 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 667-98 chr6 54127896 54128222 + 3 NA intron (NM_138569, intron 3 of 12) L2|LINE|L2 16616 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 1240-6 chr8 59213049 59213730 + 3 NA Intergenic L1PA11|LINE|L1 94179 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 480-9 chr1 78145848 78146119 + 3 NA Intergenic Intergenic -83616 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 587-51 chr15 33648213 33648575 + 3 NA intron (NM_001243996, intron 30 of 102) intron (NM_001243996, intron 30 of 102) -320103 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 1086-7 chr10 42314685 42315423 + 3 NA Intergenic Intergenic 52991 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 379-173 chr2 142416329 142416523 + 3 NA Intergenic Intergenic -284725 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 479-118 chr2 222985002 222985311 + 3 NA Intergenic Intergenic -66774 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 476-73 chr13 63898560 63898779 + 3 NA Intergenic Intergenic -54544 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 912-41 chr6 161900460 161900890 + 3 NA intron (NM_004562, intron 6 of 11) (AT)n|Simple_repeat|Simple_repeat 429698 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 363-201 chr2 5435064 5435274 + 3 NA Intergenic Intergenic 255949 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 383-111 chr14 57472900 57473088 + 3 NA intron (NM_018168, intron 5 of 5) intron (NM_018168, intron 5 of 5) 20863 NM_001283059 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 706-30 chr15 99545856 99546286 + 3 NA Intergenic Intergenic -19346 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 588-105 chr3 133131936 133132301 + 3 NA intron (NM_001282865, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 7297 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 535-93 chr16 12289964 12290187 + 3 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 313341 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 598-151 chr9 30471385 30471716 + 3 NA Intergenic Intergenic -63096 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 1245-2 chr20 9251702 9252571 + 3 NA intron (NM_182797, intron 1 of 35) Charlie5|DNA|hAT-Charlie 34746 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 717-25 chr14 47811284 47811744 + 3 NA Intergenic L1MA3|LINE|L1 -16500 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 749-24 chr12 16483120 16483612 + 3 NA Intergenic L1ME3G|LINE|L1 122013 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 400-33 chr10 41739078 41739333 + 3 NA Intergenic ALR/Alpha|Satellite|centr 628840 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 404-136 chr18 2770407 2770616 + 3 NA intron (NM_015295, intron 39 of 47) intron (NM_015295, intron 39 of 47) -76495 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 232-23 chr1 239007154 239007282 + 3 NA Intergenic MIRc|SINE|MIR -379350 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 737-88 chr9 69503607 69504014 + 3 NA intron (NM_001163, intron 2 of 12) HAL1|LINE|L1 168561 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 445-170 chr3 48279301 48279478 + 3 NA Intergenic Intergenic 12289 NR_134638 101060195 Hs.670746 NR_134638 FCF1P2 - FCF1 pseudogene 2 pseudo 488-184 chr4 23839433 23839739 + 3 NA intron (NM_001330752, intron 3 of 13) MIR3|SINE|MIR 41706 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 528-265 chrX 12570494 12570737 + 3 NA intron (NM_001368400, intron 1 of 15) intron (NM_001368400, intron 1 of 15) 71935 NM_001368400 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 347-16 chr1 99593958 99594181 + 3 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -52044 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 743-50 chr21 23261746 23262125 + 3 NA Intergenic L1MB2|LINE|L1 122900 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 611-53 chr16 62810078 62810483 + 3 NA Intergenic L1M4|LINE|L1 -773842 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 506-124 chr2 18069149 18069454 + 3 NA Intergenic L1MEi|LINE|L1 190634 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 843-42 chr8 65985463 65985837 + 3 NA Intergenic Intergenic -29328 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 490-259 chr7 30757556 30757769 + 3 NA TTS (NM_001199219) TTS (NM_001199219) 5527 NM_001199219 11185 Hs.632629 NM_006774 ENSG00000241644 INMT TEMT indolethylamine N-methyltransferase protein-coding 546-259 chrX 57192299 57192516 + 3 NA Intergenic L1MA2|LINE|L1 -54782 NM_019003 54466 Hs.460725 NM_019003 ENSG00000147059 SPIN2A DXF34|SPIN2|TDRD25|dJ323P24.1 spindlin family member 2A protein-coding 395-127 chr16 71443604 71443811 + 3 NA Intergenic Intergenic -1653 NM_001367365 485-307 chr9 35416749 35416945 + 3 NA intron (NR_003582, intron 2 of 10) L1PB3|LINE|L1 10092 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 872-15 chr13 68904848 68905468 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -19833 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 491-70 chr14 62333894 62334173 + 3 NA Intergenic L1MEc|LINE|L1 -194060 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 517-173 chr3 54740598 54740880 + 3 NA intron (NM_018398, intron 11 of 37) L3|LINE|CR1 -100882 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 518-3 chr1 87145966 87146163 + 3 NA intron (NR_026989, intron 2 of 2) intron (NR_026989, intron 2 of 2) 14138 NR_026987 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 589-126 chr5 104485001 104485441 + 3 NA Intergenic Intergenic -614253 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 482-77 chr14 71241555 71241763 + 3 NA Intergenic Intergenic -78817 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 482-114 chr19 27939384 27939732 + 3 NA intron (NR_146733, intron 2 of 6) intron (NR_146733, intron 2 of 6) -145618 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 579-17 chr10 82088372 82088810 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 144329 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 533-199 chr6 63338754 63338947 + 3 NA Intergenic L1M2|LINE|L1 -18867 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 315-30 chr1 189388881 189389051 + 3 NA Intergenic Intergenic 1087044 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 1206-6 chr4 58843901 58844578 + 3 NA Intergenic Intergenic -140043 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 521-191 chr5 51071227 51071442 + 3 NA Intergenic L1M1|LINE|L1 -101147 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 486-133 chr2 34450003 34450322 + 3 NA Intergenic L1MA2|LINE|L1 -227395 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 704-20 chr12 65484904 65485321 + 3 NA intron (NR_120431, intron 3 of 3) MSTA-int|LTR|ERVL-MaLR 72199 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 335-503 chr7 49818770 49818917 + 3 NA intron (NR_136188, intron 2 of 3) (AT)n|Simple_repeat|Simple_repeat 43510 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 461-33 chr10 54457575 54457730 + 3 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -28578 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 518-39 chr10 93818590 93818889 + 3 NA Intergenic Intergenic 60803 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 353-130 chr13 83948140 83948367 + 3 NA Intergenic Intergenic -65779 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 714-26 chr15 54450803 54451150 + 3 NA intron (NM_001329919, intron 18 of 31) L1MA4A|LINE|L1 438328 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 561-77 chr16 53818730 53818991 + 3 NA intron (NM_001363905, intron 3 of 9) L1ME4a|LINE|L1 114704 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 457-117 chr2 66824046 66824283 + 3 NA Intergenic Intergenic -80272 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 873-18 chr2 233876263 233876643 + 3 NA Intergenic L1MC1|LINE|L1 -8044 NR_024322 151507 Hs.355809 NM_001166217 ENSG00000224287 MSL3P1 MSL3L2 MSL complex subunit 3 pseudogene 1 pseudo 497-298 chr9 27915508 27915834 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -341805 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 496-3 chr1 18274062 18274295 + 3 NA intron (NM_032880, intron 2 of 9) L2b|LINE|L2 166380 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 822-63 chr8 137548826 137549379 + 3 NA Intergenic L1MA9|LINE|L1 -135514 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 473-59 chr12 47265540 47265813 + 3 NA Intergenic AluJb|SINE|Alu 41723 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 358-99 chr12 103932672 103932821 + 3 NA intron (NM_003299, intron 3 of 17) intron (NM_003299, intron 3 of 17) 2321 NR_037425 100500842 NR_037425 ENSG00000284503 MIR3652 - microRNA 3652 ncRNA 478-127 chr19 30341166 30341464 + 3 NA Intergenic Intergenic -31069 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1005-11 chr2 107804425 107805047 + 3 NA intron (NR_126370, intron 2 of 4) intron (NR_126370, intron 2 of 4) 22033 NR_024439 729121 Hs.386155 NR_024439 ENSG00000230651 RGPD4-AS1 - RGPD4 antisense RNA 1 (head to head) ncRNA 189-22 chr10 81067391 81067495 + 3 NA Intergenic Intergenic 417646 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 320-605 chrX 45391902 45392099 + 3 NA Intergenic L1MA7|LINE|L1 -113388 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 330-107 chr11 134319876 134320043 + 3 NA TTS (NM_001080407) TTS (NM_001080407) -11915 NM_138342 89944 Hs.436178 NM_138342 ENSG00000149328 GLB1L2 MST114|MSTP114 galactosidase beta 1 like 2 protein-coding 741-8 chr10 49659061 49659611 + 3 NA intron (NM_001142929, intron 13 of 14) HAL1|LINE|L1 -20315 NM_001042427 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 562-221 chr8 115895728 115896027 + 3 NA Intergenic Intergenic -226902 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 504-43 chr11 98509075 98509277 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -511773 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 591-72 chr2 88271189 88271480 + 3 NA Intergenic MIR|SINE|MIR 98195 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 488-265 chr8 41710768 41710965 + 3 NA intron (NM_020475, intron 16 of 41) intron (NM_020475, intron 16 of 41) -45592 NM_020478 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 400-8 chr1 80216756 80216939 + 3 NA Intergenic (TTCT)n|Simple_repeat|Simple_repeat -318908 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 489-99 chr16 58822227 58822397 + 3 NA Intergenic L1PA17|LINE|L1 -87996 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 733-27 chr19 28910666 28911055 + 3 NA Intergenic Intergenic -54271 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 258-58 chr10 90409892 90410053 + 3 NA intron (NR_110657, intron 3 of 6) L1MDa|LINE|L1 130833 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 557-122 chr21 25307076 25307290 + 3 NA Intergenic Intergenic 124518 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 342-270 chr2 234461953 234462107 + 3 NA Intergenic Intergenic -7435 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 754-77 chr7 67690142 67690682 + 3 NA Intergenic LTR8|LTR|ERV1 -329841 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 414-93 chr14 88172043 88172202 + 3 NA Intergenic L1PB4|LINE|L1 98789 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 887-21 chr4 61829199 61829625 + 3 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 332353 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 622-66 chr2 104524798 104525101 + 3 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -14440 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 1131-5 chr2 126541106 126541719 + 3 NA Intergenic Intergenic -114523 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 754-72 chr6 63202535 63202819 + 3 NA Intergenic L2a|LINE|L2 117300 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 425-243 chr5 144440496 144440810 + 3 NA intron (NM_001370487, intron 2 of 2) FLAM_C|SINE|Alu 235262 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 537-88 chr17 73652975 73653321 + 3 NA Intergenic Intergenic -8703 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 260-192 chr19 36883371 36883483 + 3 NA intron (NR_038362, intron 2 of 2) L2|LINE|L2 31776 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 574-146 chr6 27454499 27454814 + 3 NA intron (NM_001347832, intron 5 of 5) intron (NM_001347832, intron 5 of 5) 18242 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 546-242 chr8 117128380 117128679 + 3 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -6466 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 897-8 chr11 21212884 21213451 + 3 NA intron (NM_201551, intron 13 of 18) L1MD2|LINE|L1 543581 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 583-72 chr18 4138663 4139026 + 3 NA intron (NM_001242761, intron 2 of 11) L1MA1|LINE|L1 -125758 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 334-280 chr2 129075313 129075512 + 3 NA Intergenic Intergenic 198479 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 671-20 chr11 114521954 114522404 + 3 NA exon (NM_001367953, exon 8 of 8) exon (NM_001367953, exon 8 of 8) 37702 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 145-9 chr10 10756051 10756115 + 3 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 38831 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 825-17 chr2 33197797 33198228 + 3 NA intron (NM_206943, intron 7 of 33) intron (NM_206943, intron 7 of 33) 63415 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 443-35 chr10 43626761 43627008 + 3 NA Intergenic L1MB7|LINE|L1 -1933 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 436-238 chr5 41495799 41496075 + 3 NA intron (NM_001005473, intron 1 of 2) L1M4c|LINE|L1 14664 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 311-461 chr7 13660769 13660935 + 3 NA Intergenic L1MB3|LINE|L1 325662 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 559-148 chr5 113859149 113859347 + 3 NA Intergenic L1M3f|LINE|L1 345554 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 558-76 chr18 4332925 4333231 + 3 NA intron (NM_001242761, intron 1 of 11) MLT1H|LTR|ERVL-MaLR 68476 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 965-4 chr12 121100698 121101197 + 3 NA Intergenic L1MA4|LINE|L1 -31929 NR_033953 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 424-251 chr7 2940866 2941093 + 3 NA intron (NM_001324281, intron 6 of 25) intron (NM_001324281, intron 6 of 25) -96671 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 348-74 chr11 4634336 4634500 + 3 NA Intergenic Intergenic -5297 NM_001004751 390038 Hs.553728 NM_001004751 ENSG00000197428 OR51D1 OR11-14|OR51D1Q olfactory receptor family 51 subfamily D member 1 protein-coding 517-210 chr5 29522430 29522692 + 3 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -126585 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 451-209 chr7 3506323 3506611 + 3 NA intron (NM_152744, intron 1 of 44) L1MEf|LINE|L1 205215 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 282-55 chr10 91860208 91860377 + 3 NA intron (NM_025235, intron 25 of 26) intron (NM_025235, intron 25 of 26) 49194 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 806-45 chr4 65825733 65826038 + 3 NA Intergenic Tigger6a|DNA|TcMar-Tigger -155390 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 1376 chr10 57229849 57230728 + 3 NA Intergenic L1MA4|LINE|L1 74271 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 311-463 chr7 21800233 21800387 + 3 NA intron (NM_001277115, intron 61 of 81) MLT1O|LTR|ERVL-MaLR 145589 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 631-59 chr2 19976073 19976515 + 3 NA intron (NM_001006657, intron 5 of 27) L2c|LINE|L2 13811 NM_001006657 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 810-60 chrX 46376509 46376818 + 3 NA Intergenic MIRb|SINE|MIR -48989 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 219-240 chr3 100969449 100969530 + 3 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 24001 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 513-270 chr8 5697307 5697530 + 3 NA Intergenic L1MC3|LINE|L1 -702504 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 511-247 chr7 71258746 71259022 + 3 NA intron (NM_022479, intron 1 of 10) L2c|LINE|L2 -48790 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 1013-9 chr2 224112535 224112918 + 3 NA Intergenic L1PB3|LINE|L1 -73407 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 705-45 chr19 11942344 11942707 + 3 NA intron (NM_144566, intron 1 of 3) LTR2|LTR|ERV1 17418 NM_144566 90592 Hs.528486 NM_144566 ENSG00000196757 ZNF700 - zinc finger protein 700 protein-coding 400-100 chr14 79521576 79521754 + 3 NA intron (NR_073547, intron 15 of 20) L1M7|LINE|L1 242285 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 314-351 chr21 27320638 27320756 + 3 NA Intergenic Intergenic -353609 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 590-148 chr6 81249524 81249855 + 3 NA Intergenic L1PB1|LINE|L1 502992 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 832-38 chr5 113841753 113842175 + 3 NA Intergenic MIRb|SINE|MIR 328270 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 814-58 chr8 31998171 31998601 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -27350 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 265-83 chr12 94418653 94418803 + 3 NA intron (NM_001368042, intron 1 of 5) L1MB5|LINE|L1 41139 NM_001346457 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 552-148 chr3 195231663 195231890 + 3 NA intron (NM_152531, intron 1 of 3) L1MA3|LINE|L1 16144 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 310-209 chr18 79908312 79908536 + 3 NA intron (NM_001146343, intron 3 of 3) L1MEf|LINE|L1 43229 NM_025078 80148 Hs.288284 NM_025078 ENSG00000122490 SLC66A2 PQLC1 solute carrier family 66 member 2 protein-coding 444-110 chr19 9573065 9573294 + 3 NA intron (NM_001308269, intron 1 of 4) L1M3f|LINE|L1 11325 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 634-46 chr12 103158870 103159178 + 3 NA intron (NR_126333, intron 2 of 6) intron (NR_126333, intron 2 of 6) 7182 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 554-100 chr18 37952513 37952943 + 3 NA Intergenic Intergenic 295593 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 771-69 chr5 53845523 53845840 + 3 NA Intergenic L1PA3|LINE|L1 -25999 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 582-34 chr14 42762868 42763123 + 3 NA Intergenic L1MB7|LINE|L1 1156139 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 471-210 chr5 89155791 89156066 + 3 NA intron (NR_136219, intron 6 of 9) intron (NR_136219, intron 6 of 9) -251823 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 566-50 chr14 63265777 63266014 + 3 NA intron (NM_020663, intron 1 of 4) MER4D|LTR|ERV1 53040 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 591-20 chr11 15354101 15354364 + 3 NA Intergenic Intergenic 205130 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 377-335 chr5 127818057 127818357 + 3 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 114818 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 981-26 chr6 163100979 163101626 + 3 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -47141 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 1020-6 chr16 65364080 65364612 + 3 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) -187773 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 592-95 chr2 200839432 200839817 + 3 NA Intergenic L1M1|LINE|L1 24937 NM_001162407 1195 Hs.433732 NM_004071 ENSG00000013441 CLK1 CLK|CLK/STY|STY CDC like kinase 1 protein-coding 567-32 chr11 55098222 55098522 + 3 NA Intergenic AluY|SINE|Alu -163783 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 495-160 chr3 99402004 99402176 + 3 NA Intergenic Intergenic -236504 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 469-95 chr15 70333389 70333592 + 3 NA Intergenic L1ME2|LINE|L1 172438 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 391-359 chr8 109912579 109912779 + 3 NA Intergenic Intergenic 63092 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 304-120 chr12 97358832 97358987 + 3 NA Intergenic Intergenic -103867 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 676-70 chr20 42591168 42591501 + 3 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -94149 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 366-261 chr22 32689014 32689221 + 3 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -111699 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 310-499 chr7 156249743 156249967 + 3 NA Intergenic L1ME3G|LINE|L1 195733 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 302-438 chr8 46480981 46481196 + 3 NA Intergenic ALR/Alpha|Satellite|centr 136555 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 693-29 chr14 43790879 43791250 + 3 NA Intergenic Intergenic 716219 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 281-195 chr2 24179226 24179346 + 3 NA intron (NM_001040710, intron 3 of 5) intron (NM_001040710, intron 3 of 5) 4233 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 616-145 chr6 117140587 117140922 + 3 NA Intergenic Intergenic -124804 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 373-334 chr5 117970757 117970923 + 3 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) 240479 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 886-33 chr7 31558820 31559402 + 3 NA intron (NM_194300, intron 3 of 12) LTR88b|LTR|Gypsy? 6109 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 763-16 chr14 53374790 53375143 + 3 NA Intergenic Intergenic 221612 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 545-104 chr19 58156694 58156900 + 3 NA Intergenic Intergenic -6008 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 436-217 chr4 97994254 97994427 + 3 NA intron (NM_174952, intron 5 of 10) L1PB1|LINE|L1 149136 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 431-206 chr4 99391332 99391620 + 3 NA Intergenic L1MB2|LINE|L1 -38730 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 428-104 chr18 67949433 67949641 + 3 NA Intergenic Intergenic -134715 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 849-22 chr2 113872352 113872859 + 3 NA intron (NR_110174, intron 1 of 4) MLT1C|LTR|ERVL-MaLR -17329 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 383-409 chr9 24104370 24104577 + 3 NA Intergenic Intergenic -253872 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 700-96 chr8 5533546 5533901 + 3 NA Intergenic LTR9D|LTR|ERV1 -538809 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 384-128 chr15 95693882 95694089 + 3 NA Intergenic L1MCc|LINE|L1 260892 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 476-158 chr20 5387722 5387904 + 3 NA Intergenic L1MA4A|LINE|L1 57935 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 783-64 chr5 141443230 141443712 + 3 NA intron (NM_003735, intron 1 of 3) AluJb|SINE|Alu 12964 NM_032094 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 722-37 chr17 40573016 40573397 + 3 NA Intergenic L1PA12|LINE|L1 -7734 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 171-76 chr3 253539 253633 + 3 NA intron (NM_001253387, intron 2 of 26) intron (NM_001253387, intron 2 of 26) 55697 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 537-91 chr18 40712899 40713205 + 3 NA Intergenic Intergenic 646766 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 294-490 chr9 25227270 25227443 + 3 NA Intergenic Intergenic 451502 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 458-40 chr11 90536337 90536520 + 3 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 19429 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 398-309 chr6 140733787 140733977 + 3 NA Intergenic Intergenic 50068 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 953-24 chr5 116719637 116720176 + 3 NA Intergenic Intergenic 42303 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 449-205 chr5 21445237 21445431 + 3 NA Intergenic L1MC2|LINE|L1 -14146 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 394-123 chr16 47404174 47404347 + 3 NA intron (NM_030790, intron 6 of 17) intron (NM_030790, intron 6 of 17) 56803 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 418-26 chr10 31296660 31296940 + 3 NA Intergenic Intergenic -21617 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 522-239 chr7 106592305 106592569 + 3 NA Intergenic Intergenic 68721 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 628-31 chr12 2442833 2443231 + 3 NA intron (NM_199460, intron 3 of 49).2 MSTB-int|LTR|ERVL-MaLR 173256 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 790-14 chr13 103843763 103844060 + 3 NA Intergenic Intergenic 418711 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 438-48 chr11 22955096 22955317 + 3 NA Intergenic Intergenic -94732 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 637-93 chr5 45934320 45934669 + 3 NA Intergenic ALR/Alpha|Satellite|centr -238114 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 453-51 chr12 30344152 30344313 + 3 NA Intergenic MER77|LTR|ERVL 333012 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 301-231 chr2 153019394 153019556 + 3 NA Intergenic Intergenic 300838 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 536-156 chr3 1777242 1777501 + 3 NA Intergenic Intergenic -321432 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 472-145 chr2 3906037 3906265 + 3 NA Intergenic Intergenic 67881 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 434-246 chr6 53212450 53212640 + 3 NA Intergenic L1MA6|LINE|L1 -63704 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 493-66 chr12 127321114 127321453 + 3 NA Intergenic MIRb|SINE|MIR 18789 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 439-122 chr2 7806086 7806276 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 93474 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 690-4 chr1 218689703 218690113 + 3 NA intron (NR_031644, intron 4 of 6) MLT1F2|LTR|ERVL-MaLR 179813 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 622-156 chrX 28164105 28164326 + 3 NA Intergenic L1ME3F|LINE|L1 -182766 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 500-106 chr17 53984337 53984665 + 3 NA Intergenic Intergenic 161574 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 554-205 chr8 117499324 117499610 + 3 NA Intergenic LTR28B|LTR|ERV1 -21246 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 549-52 chr13 64409673 64410087 + 3 NA Intergenic Intergenic -333869 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 507-28 chr10 41761275 41761483 + 3 NA Intergenic ALR/Alpha|Satellite|centr 606666 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 1031-4 chr11 104354457 104354992 + 3 NA Intergenic L1M4b|LINE|L1 -190577 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 790-62 chrX 130231037 130231360 + 3 NA intron (NM_017666, intron 8 of 18) L1PA17|LINE|L1 37701 NM_017666 55609 Hs.308418 NM_017666 ENSG00000056277 ZNF280C SUHW3|ZNF633|ZPET zinc finger protein 280C protein-coding 506-268 chr7 53583759 53584030 + 3 NA Intergenic L1MCa|LINE|L1 228037 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 644-71 chr4 71649522 71649825 + 3 NA Intergenic Intergenic 134406 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 308-422 chr6 70637712 70637828 + 3 NA Intergenic L1ME4b|LINE|L1 -30113 NM_001044305 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 769-25 chr2 22718577 22719125 + 3 NA Intergenic L2a|LINE|L2 182372 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 586-15 chr1 217985425 217985813 + 3 NA Intergenic Intergenic -57886 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 538-46 chr11 97904797 97905091 + 3 NA Intergenic Intergenic -1116005 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 298-8 chr1 81019134 81019295 + 3 NA Intergenic Intergenic -286978 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 488-139 chr2 79378485 79378789 + 3 NA Intergenic Intergenic 122207 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 522-154 chr20 7203455 7203761 + 3 NA intron (NR_110609, intron 3 of 7) MLT2D|LTR|ERVL 50594 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 747-21 chr14 72276430 72276856 + 3 NA intron (NM_001370288, intron 2 of 16) THE1B|LTR|ERVL-MaLR -240177 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 582-168 chr9 86783512 86783857 + 3 NA Intergenic Intergenic 163822 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 924-30 chr3 36830375 36830910 + 3 NA intron (NM_001329998, intron 22 of 23) intron (NM_001329998, intron 22 of 23) -8142 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 462-58 chr12 39639956 39640124 + 3 NA intron (NM_001031748, intron 1 of 12) intron (NM_001031748, intron 1 of 12) 13857 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 430-130 chr18 67600585 67600757 + 3 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -83951 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 350-403 chr5 93861788 93861977 + 3 NA intron (NM_032042, intron 7 of 10) intron (NM_032042, intron 7 of 10) -120282 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 554-83 chr15 39116067 39116447 + 3 NA Intergenic L1PA16|LINE|L1 -134412 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 773-8 chr14 36407324 36407788 + 3 NA Intergenic Intergenic -86880 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 348-493 chr7 52360911 52361117 + 3 NA Intergenic Intergenic -674619 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 366-98 chr12 37310802 37310933 + 3 NA Intergenic ALR/Alpha|Satellite|centr -1005907 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 387-49 chr11 10080532 10080711 + 3 NA intron (NM_030962, intron 2 of 39) L1M2|LINE|L1 213586 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 899-3 chr11 50527473 50527888 + 3 NA Intergenic ALR/Alpha|Satellite|centr 118533 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 755-75 chr9 107774263 107774681 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -284703 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 433-108 chr17 54169949 54170195 + 3 NA Intergenic Intergenic 347145 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 866-53 chr8 136412735 136413294 + 3 NA Intergenic MIRc|SINE|MIR -117784 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 523-161 chr21 19928215 19928493 + 3 NA Intergenic Intergenic -28599 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 395-205 chr21 30058740 30058925 + 3 NA Intergenic Intergenic 107973 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 444-89 chr16 76669726 76670009 + 3 NA Intergenic L1M4|LINE|L1 34869 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 542-77 chr17 33719208 33719505 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -185596 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 427-265 chr8 119290493 119290686 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -34582 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 470-131 chr2 80783189 80783439 + 3 NA Intergenic L1MEg|LINE|L1 469935 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 352-34 chr1 238699534 238699773 + 3 NA Intergenic Intergenic -213636 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 1471-2 chr19 51864193 51865123 + 3 NA intron (NM_001370455, intron 5 of 6) L2|LINE|L2 23278 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 505-254 chr5 152979756 152980026 + 3 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -7542 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 561-58 chr13 63339513 63339827 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -11576 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 408-263 chr5 28302177 28302355 + 3 NA Intergenic Intergenic -14601 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 563-112 chr22 23271197 23271527 + 3 NA intron (NM_004327, intron 5 of 22) intron (NM_004327, intron 5 of 22) 8595 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 553-104 chr2 19619035 19619255 + 3 NA Intergenic L1PB1|LINE|L1 -249709 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 520-317 chr8 140053874 140054084 + 3 NA intron (NM_001160372, intron 17 of 22) L1PA17|LINE|L1 46556 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 451-205 chr6 162509915 162510126 + 3 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -217112 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 724-53 chr3 96935566 96936089 + 3 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 121233 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 435-44 chr11 2487286 2487519 + 3 NA intron (NM_181798, intron 1 of 15) L1MB2|LINE|L1 25948 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 487-136 chr2 35386126 35386415 + 3 NA Intergenic Intergenic -85135 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 388-383 chrX 131469532 131469706 + 3 NA Intergenic L1MC2|LINE|L1 -74455 NM_001004486 347468 Hs.553711 NM_001004486 ENSG00000171054 OR13H1 ORX1 olfactory receptor family 13 subfamily H member 1 protein-coding 600-72 chr2 144345619 144345889 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -12685 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 568-198 chr8 89608152 89608429 + 3 NA Intergenic Intergenic 149421 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 720-43 chr2 47708746 47709150 + 3 NA Intergenic Intergenic -74134 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 461-295 chrX 27881260 27881559 + 3 NA Intergenic Intergenic 73419 NM_182506 139422 Hs.447363 NM_182506 ENSG00000177689 MAGEB10 - MAGE family member B10 protein-coding 682-31 chr14 68129507 68129901 + 3 NA intron (NM_133509, intron 7 of 10) MamRep605|LTR?|LTR? 306112 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 250-43 chr10 62942182 62942382 + 3 NA Intergenic L1M5|LINE|L1 -123115 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 808-57 chr8 110160364 110160737 + 3 NA Intergenic Intergenic -184779 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 1071-16 chr5 108802678 108803219 + 3 NA intron (NM_001308028, intron 3 of 17) L1PA16|LINE|L1 54000 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 557-180 chr7 22223632 22223858 + 3 NA intron (NM_012294, intron 8 of 25) L2a|LINE|L2 -28935 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 816-19 chr19 9290391 9290785 + 3 NA TTS (NM_198535) TTS (NM_198535) 19250 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 372-337 chr3 131994796 131994999 + 3 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) -8966 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 390-186 chr2 72843794 72843978 + 3 NA Intergenic Intergenic -17853 NM_001321734 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 655-32 chr13 31289423 31289824 + 3 NA intron (NM_194318, intron 12 of 14) L1M2|LINE|L1 89648 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 391-173 chr2 67434280 67434450 + 3 NA Intergenic Intergenic 37032 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 241-26 chr1 225119900 225120074 + 3 NA intron (NM_001367479, intron 26 of 85) LTR8|LTR|ERV1 190312 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 503-9 chr1 60453174 60453447 + 3 NA Intergenic Intergenic 169375 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 302-341 chr5 12263089 12263226 + 3 NA Intergenic Intergenic -311700 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 320-311 chr20 41741062 41741220 + 3 NA Intergenic L1PA16|LINE|L1 -122764 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 923-19 chr3 182272945 182273463 + 3 NA Intergenic MIR|SINE|MIR 213158 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 554-155 chr4 43675215 43675578 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -182853 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 453-206 chr5 62582417 62582756 + 3 NA intron (NR_073584, intron 1 of 3) intron (NR_073584, intron 1 of 3) 3767 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 490-204 chr4 72720563 72720848 + 3 NA Intergenic Intergenic -151484 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 299-176 chr17 73038824 73039028 + 3 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 53762 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 473-187 chr4 13689051 13689316 + 3 NA intron (NR_121681, intron 2 of 3) L1PA13|LINE|L1 34004 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 593-114 chr5 5939328 5939536 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 397860 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 839-52 chr8 107917941 107918425 + 3 NA intron (NM_001282863, intron 4 of 4) MER41-int|LTR|ERV1 163756 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 577-37 chr10 122760749 122761100 + 3 NA intron (NR_003570, intron 3 of 27) intron (NR_003570, intron 3 of 27) 4230 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 480-273 chr7 41180629 41180810 + 3 NA Intergenic Intergenic 79115 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 634-51 chr13 108247786 108248201 + 3 NA Intergenic L1MB8|LINE|L1 -21636 NM_001145645 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 603-17 chr10 91821560 91821836 + 3 NA intron (NM_025235, intron 6 of 26) L2c|LINE|L2 23272 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 406-244 chr5 147324622 147324840 + 3 NA intron (NM_001112724, intron 5 of 12) MIRc|SINE|MIR 89705 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 416-62 chr10 131413856 131414135 + 3 NA Intergenic Intergenic -102274 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 507-184 chr4 71328591 71328776 + 3 NA intron (NM_001098484, intron 3 of 25) L1MA3|LINE|L1 -10370 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 653-123 chr8 100342249 100342537 + 3 NA Intergenic Tigger8|DNA|TcMar-Tigger -6189 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 810-53 chr8 33637362 33637769 + 3 NA Intergenic Intergenic -37459 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 205-229 chr5 137966019 137966099 + 3 NA intron (NM_001101801, intron 9 of 21) intron (NM_001101801, intron 9 of 21) -66715 NR_037900 100130172 Hs.616629 NR_037900 LOC100130172 - uncharacterized LOC100130172 ncRNA 289-310 chr3 98063974 98064109 + 3 NA Intergenic L1M5|LINE|L1 -23132 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 570-64 chr14 80415285 80415709 + 3 NA intron (NR_038355, intron 8 of 8) L2|LINE|L2 -184440 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 829-14 chr14 38802652 38803246 + 3 NA intron (NR_039982, intron 4 of 4) L1MA5|LINE|L1 -79647 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 423-314 chr9 116031442 116031611 + 3 NA Intergenic MIRb|SINE|MIR -106319 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 927-26 chr8 136949123 136949626 + 3 NA Intergenic Intergenic 418576 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 315-350 chr4 132660460 132660721 + 3 NA intron (NR_126401, intron 2 of 3) intron (NR_126401, intron 2 of 3) 69501 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 578-47 chr12 2498153 2498550 + 3 NA intron (NM_199460, intron 7 of 49).2 intron (NM_199460, intron 7 of 49).2 173869 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 797-44 chr6 60675524 60675957 + 3 NA Intergenic L1M4|LINE|L1 -898390 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 685-41 chr19 46292098 46292501 + 3 NA Intergenic L1ME2z|LINE|L1 -4743 NM_152795 64344 Hs.420830 NM_022462 ENSG00000124440 HIF3A HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17 hypoxia inducible factor 3 subunit alpha protein-coding 799-55 chr8 119211830 119212500 + 3 NA intron (NM_052886, intron 1 of 3) intron (NM_052886, intron 1 of 3) 3802 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 437-189 chr4 43441236 43441479 + 3 NA Intergenic Intergenic 51186 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 596-161 chr8 52153521 52153892 + 3 NA intron (NM_014682, intron 15 of 25) intron (NM_014682, intron 15 of 25) -40656 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 683-49 chr22 33389359 33389653 + 3 NA intron (NM_133642, intron 7 of 14) intron (NM_133642, intron 7 of 14) 47163 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 449-246 chr6 162981266 162981561 + 3 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 72748 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 435-233 chr8 52557664 52557920 + 3 NA intron (NM_207413, intron 1 of 4) AluSz|SINE|Alu 7638 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 1744-2 chr12 34663716 34664785 + 3 NA Intergenic ALR/Alpha|Satellite|centr 641754 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 479-222 chr6 140019148 140019403 + 3 NA intron (NR_121623, intron 1 of 1) (TC)n|Simple_repeat|Simple_repeat -28014 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 377-57 chr10 121012780 121012970 + 3 NA Intergenic L1MC1|LINE|L1 161513 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 545-247 chr8 129517732 129517945 + 3 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -33696 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 513-259 chr7 19224446 19224806 + 3 NA Intergenic Intergenic -79205 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 540-12 chr1 81401962 81402143 + 3 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 95657 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 421-237 chr5 52448898 52449113 + 3 NA Intergenic Intergenic -338911 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 390-233 chr3 43234496 43234702 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -51913 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 633-106 chr6 131839927 131840248 + 3 NA intron (NM_006208, intron 1 of 24) intron (NM_006208, intron 1 of 24) 32067 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 605-5 chr1 173562648 173562866 + 3 NA intron (NM_178527, intron 9 of 27) intron (NM_178527, intron 9 of 27) 40315 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 936-10 chr14 86391724 86392219 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 457293 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 648-74 chr2 126470236 126470721 + 3 NA Intergenic Intergenic -185457 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 664-44 chr15 98051457 98051828 + 3 NA Intergenic Intergenic 37111 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 418-128 chr2 135018356 135018583 + 3 NA intron (NM_001321177, intron 2 of 9) AluJr4|SINE|Alu 5180 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 548-157 chr3 178143962 178144420 + 3 NA Intergenic Tigger12c|DNA|TcMar-Tigger -275010 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 509-167 chr4 89262 89436 + 3 NA Intergenic Intergenic -35127 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 463-78 chr13 50205665 50205852 + 3 NA intron (NR_109974, intron 2 of 6) L4_B_Mam|LINE|RTE-X 33740 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 950-17 chr2 239885797 239886431 + 3 NA Intergenic AluJb|SINE|Alu 56980 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 772-12 chr11 115645010 115645398 + 3 NA Intergenic Intergenic 89558 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 721-41 chr2 226591584 226591937 + 3 NA Intergenic L1PA11|LINE|L1 67033 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 1129-21 chr8 130873164 130873824 + 3 NA intron (NM_001115, intron 8 of 17) AluSp|SINE|Alu 167415 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 325-359 chr3 119427429 119427591 + 3 NA Intergenic L1MA7|LINE|L1 36105 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 382-383 chr7 53384377 53384603 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 348857 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 300-101 chr13 87632132 87632266 + 3 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) -13459 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 498-44 chr11 23296644 23296976 + 3 NA Intergenic Intergenic 122380 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 393-337 chr7 93100708 93100885 + 3 NA 3' UTR (NM_001193307, exon 2 of 2) 3' UTR (NM_001193307, exon 2 of 2) 17183 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 601-108 chr4 63352306 63352651 + 3 NA Intergenic Intergenic 1056972 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 543-45 chr10 131115234 131115430 + 3 NA intron (NM_174937, intron 9 of 11) MER54A|LTR|ERVL 20114 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 546-204 chr6 16041139 16041527 + 3 NA Intergenic L1M5|LINE|L1 -87753 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 684-2 chr1 37363675 37364131 + 3 NA Intergenic L2b|LINE|L2 110540 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 665-25 chr13 46353659 46354146 + 3 NA intron (NM_025113, intron 10 of 14) MER3|DNA|hAT-Charlie 33350 NM_001286764 80183 Hs.98117 NM_025113 ENSG00000102445 RUBCNL C13orf18|KIAA0226L|PACER rubicon like autophagy enhancer protein-coding 634-3 chr1 83597011 83597374 + 3 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 151138 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 538-203 chr5 104470770 104470970 + 3 NA Intergenic L1M4|LINE|L1 -628604 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 389-365 chr8 115164491 115164672 + 3 NA Intergenic Intergenic 503432 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 288-94 chr13 37398897 37399061 + 3 NA Intergenic L1PA15|LINE|L1 85805 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 465-89 chr15 62543930 62544093 + 3 NA Intergenic Intergenic 101170 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 433-117 chr18 62686834 62687056 + 3 NA Intergenic Intergenic -28596 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 503-222 chr5 8926514 8926745 + 3 NA Intergenic L1MA2|LINE|L1 86897 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 529-76 chr16 63108231 63108592 + 3 NA Intergenic Intergenic -1071973 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 521-184 chr4 154973019 154973300 + 3 NA Intergenic Intergenic 191654 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 408-304 chr6 140720291 140720501 + 3 NA Intergenic Intergenic 36582 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 993-22 chr7 28659416 28660070 + 3 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -26390 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 413-133 chr2 56230360 56230526 + 3 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -44673 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 1027-13 chr4 405844 406357 + 3 NA Intergenic AluY|SINE|Alu 55943 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 429-144 chr2 29142014 29142294 + 3 NA intron (NM_001287528, intron 6 of 14) L1PA17|LINE|L1 26739 NM_001287527 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 763-19 chr14 76617684 76618049 + 3 NA Intergenic L1MEf|LINE|L1 -143602 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 561-147 chr4 69571673 69571992 + 3 NA Intergenic Intergenic -45818 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 326-528 chr8 81856552 81856711 + 3 NA Intergenic Intergenic -14345 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 603-110 chr3 108841149 108841617 + 3 NA intron (NM_001317747, intron 2 of 4) intron (NM_001317747, intron 2 of 4) 18597 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 453-235 chr6 131480616 131480972 + 3 NA Intergenic Intergenic -92432 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 613-34 chr15 27405256 27405623 + 3 NA intron (NM_001270873, intron 5 of 5) L1ME3Cz|LINE|L1 -244120 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 343-303 chr20 47411961 47412233 + 3 NA promoter-TSS (NR_146494) promoter-TSS (NR_146494) 47 NR_146496 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 340-318 chr20 38214556 38214673 + 3 NA intron (NM_001029864, intron 13 of 13) intron (NM_001029864, intron 13 of 13) -45561 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 390-388 chr8 107270079 107270312 + 3 NA intron (NM_001199859, intron 7 of 8) intron (NM_001199859, intron 7 of 8) 66320 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 758-12 chr10 111717790 111718276 + 3 NA Intergenic L1PA15|LINE|L1 465732 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 551-38 chr12 24384120 24384419 + 3 NA intron (NM_152989, intron 2 of 17) MER1B|DNA|hAT-Charlie 160998 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 570-111 chr2 102194034 102194401 + 3 NA intron (NM_003854, intron 4 of 11) L1ME3A|LINE|L1 6903 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 598-140 chr8 87752181 87752410 + 3 NA Intergenic MER11A|LTR|ERVK 121720 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 372-80 chr11 91755921 91756081 + 3 NA Intergenic L1PA15|LINE|L1 -469033 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 504-25 chr10 64850043 64850264 + 3 NA Intergenic Intergenic 24625 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 1077-6 chr14 97684186 97684824 + 3 NA intron (NR_033943, intron 1 of 3) intron (NR_033943, intron 1 of 3) 2153 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 496 chr1 4257205 4257441 + 3 NA Intergenic Intergenic -154728 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 529-139 chr3 97306962 97307258 + 3 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -132497 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 846-41 chr5 88986598 88987049 + 3 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -82718 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 389-289 chr5 78621349 78621524 + 3 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 27336 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 450-308 chr8 117180268 117180561 + 3 NA Intergenic Intergenic 45419 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 349-118 chr12 20557983 20558147 + 3 NA intron (NM_000921, intron 2 of 15) intron (NM_000921, intron 2 of 15) -13799 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 311-181 chr16 68129395 68129518 + 3 NA intron (NM_004555, intron 3 of 10) HAL1b|LINE|L1 44086 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 530-82 chr15 54941224 54941432 + 3 NA Intergenic Intergenic -115419 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 461-52 chr11 102686757 102687000 + 3 NA Intergenic L1ME1|LINE|L1 18891 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 861-23 chr4 35711604 35712313 + 3 NA Intergenic Intergenic 531981 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 268-78 chr12 20520107 20520260 + 3 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -51681 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 529-33 chr11 70585971 70586181 + 3 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) -45018 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 729-59 chr4 62993709 62994091 + 3 NA Intergenic Intergenic -832135 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 359-342 chr3 190042935 190043096 + 3 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 77882 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 686-68 chr5 143782033 143782444 + 3 NA Intergenic Intergenic -29923 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 261-102 chr14 49355543 49355729 + 3 NA Intergenic Intergenic 230744 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 382-267 chr3 76705713 76705868 + 3 NA Intergenic Intergenic -334309 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 497-269 chr7 102872058 102872292 + 3 NA intron (NR_105043, intron 17 of 20) intron (NR_105043, intron 17 of 20) -40825 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 545-211 chr6 146135457 146135668 + 3 NA intron (NM_001278065, intron 2 of 9) MIR3|SINE|MIR 106364 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 593-83 chr2 214119631 214119922 + 3 NA intron (NR_047660, intron 13 of 14) L1MEi|LINE|L1 -291278 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 1217-3 chr21 20313553 20314193 + 3 NA Intergenic AluJb|SINE|Alu -55188 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 526-236 chr8 15197833 15198133 + 3 NA intron (NM_139167, intron 1 of 7) (AT)n|Simple_repeat|Simple_repeat 40448 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 484-55 chr13 57425906 57426089 + 3 NA Intergenic L1PA10|LINE|L1 -205747 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 637-81 chr3 67282865 67283327 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 57632 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 557-85 chr2 17276589 17276835 + 3 NA Intergenic L2|LINE|L2 241728 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 645-78 chr3 76102266 76102578 + 3 NA Intergenic Intergenic -316873 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 900-22 chr20 12671481 12672000 + 3 NA Intergenic Intergenic 265223 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 608-113 chr4 98065894 98066151 + 3 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 77454 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 532-147 chr21 19752628 19752922 + 3 NA Intergenic L1M5|LINE|L1 146980 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 530-112 chr2 6695939 6696258 + 3 NA Intergenic Tigger4|DNA|TcMar-Tigger -45579 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 410-186 chr3 31057677 31057858 + 3 NA Intergenic L1MD2|LINE|L1 104020 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 412-235 chr4 71612459 71612633 + 3 NA Intergenic Tigger9a|DNA|TcMar-Tigger 171533 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 462-202 chr4 60393504 60393685 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -529025 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 340-329 chr20 59345698 59345819 + 3 NA Intergenic MLT2C1|LTR|ERVL 45147 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 640-6 chr1 175615688 175616066 + 3 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 127718 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 677-3 chr1 42079123 42079493 + 3 NA Intergenic L1MA4A|LINE|L1 -43374 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 552-65 chr14 86862272 86862567 + 3 NA Intergenic (A)n|Simple_repeat|Simple_repeat -43359 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 270-154 chr17 56822633 56822743 + 3 NA intron (NM_001085430, intron 4 of 7) intron (NM_001085430, intron 4 of 7) 11232 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 172-130 chr8 75963695 75963795 + 3 NA Intergenic L1ME2|LINE|L1 423777 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 330-534 chr8 130622829 130622962 + 3 NA Intergenic L1MC4|LINE|L1 -179221 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 250-273 chr3 44593083 44593281 + 3 NA intron (NM_001351734, intron 2 of 6).2 intron (NM_001351734, intron 2 of 6).2 8218 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 818-4 chr10 20617985 20618446 + 3 NA Intergenic Intergenic 66245 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 482-153 chr21 31404073 31404382 + 3 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -59873 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 446-313 chr8 118912942 118913217 + 3 NA Intergenic Intergenic 38806 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 581-35 chr13 24301654 24302018 + 3 NA intron (NM_001286795, intron 9 of 9) intron (NM_001286795, intron 9 of 9) -5330 NM_001303138 338872 Hs.362854 NM_178540 ENSG00000240654 C1QTNF9 AQL1|C1QTNF9A|CTRP9 C1q and TNF related 9 protein-coding 549-209 chr8 65933765 65933987 + 3 NA Intergenic L2b|LINE|L2 -81102 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 452-206 chr5 10023096 10023433 + 3 NA Intergenic L1M3f|LINE|L1 -119440 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 318-590 chrX 66669087 66669246 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -29868 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 445-153 chr20 36380958 36381194 + 3 NA intron (NM_001365621, intron 2 of 12) intron (NM_001365621, intron 2 of 12) 74737 NM_001365621 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 482-108 chr18 52895439 52895723 + 3 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -341520 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 239-308 chr5 30606314 30606437 + 3 NA Intergenic L2|LINE|L2 -587311 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 298-314 chr4 26767238 26767368 + 3 NA Intergenic MER103C|DNA|hAT-Charlie 92941 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 244-78 chr13 49164045 49164198 + 3 NA intron (NM_001079673, intron 8 of 25) L1M2|LINE|L1 53804 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 472-166 chr2 123590254 123590437 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 434829 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 511-101 chr18 78481978 78482160 + 3 NA Intergenic Intergenic -488342 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 542-22 chr10 65265331 65265714 + 3 NA Intergenic L1ME1|LINE|L1 -305903 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 526-162 chr3 950539 950743 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -142383 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 346-245 chr2 82079481 82079643 + 3 NA Intergenic MIRc|SINE|MIR -612616 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 463-60 chr11 82214681 82214885 + 3 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 189130 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 649-95 chr6 22840735 22841046 + 3 NA Intergenic L1M2a1|LINE|L1 -122966 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 1060-14 chr4 60757403 60757972 + 3 NA Intergenic L1MB1|LINE|L1 -164932 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 670-135 chr9 80569961 80570461 + 3 NA Intergenic L1M4c|LINE|L1 595188 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 1087-18 chr7 33816518 33817013 + 3 NA Intergenic MADE1|DNA|TcMar-Mariner -88150 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 370-30 chr1 247751421 247751652 + 3 NA Intergenic L1M3e|LINE|L1 -3378 NM_001355292 388761 Hs.283211 NM_001355292 ENSG00000241128 OR14A2 OR5AX1|OR5AX1P olfactory receptor family 14 subfamily A member 2 protein-coding 325-12 chr1 73076393 73076565 + 3 NA Intergenic L1ME1|LINE|L1 -229691 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 414-292 chr6 152262066 152262238 + 3 NA exon (NM_033071, exon 100 of 146) exon (NM_033071, exon 100 of 146) -76774 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 664-51 chr2 58826784 58827205 + 3 NA intron (NR_033873, intron 2 of 13) L1M1|LINE|L1 306241 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 338-443 chr5 92937350 92937560 + 3 NA Intergenic Intergenic 633888 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 407-63 chr12 29212813 29212991 + 3 NA intron (NM_001271783, intron 1 of 11) MIRb|SINE|MIR -10764 NM_001271784 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 662-33 chr17 52507080 52507548 + 3 NA intron (NR_146898, intron 1 of 3) Tigger2a|DNA|TcMar-Tigger 116792 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 583-96 chr2 196038292 196038682 + 3 NA intron (NM_018897, intron 5 of 64) L1MA5|LINE|L1 30350 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 662-77 chr5 123790637 123791052 + 3 NA Intergenic Intergenic 245427 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 477-48 chr10 131034646 131034930 + 3 NA Intergenic Intergenic -60430 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 679-57 chr2 196501421 196501749 + 3 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 91398 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 431-90 chr15 69103517 69103756 + 3 NA Intergenic MIRb|SINE|MIR 22786 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 641-10 chr10 43547764 43548095 + 3 NA Intergenic Intergenic 20530 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 277-42 chr10 18875744 18875932 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -172963 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 531-56 chr14 24563391 24563569 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 12770 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 479-217 chr6 101256301 101256595 + 3 NA Intergenic L1ME1|LINE|L1 -142537 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 353-455 chr6 66173084 66173270 + 3 NA Intergenic HERVIP10B3-int|LTR|ERV1 385298 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 733-40 chr2 149105041 149105519 + 3 NA intron (NM_001317004, intron 1 of 6) L1ME1|LINE|L1 -12894 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 778-39 chr2 230140502 230140842 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -71748 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 461-192 chr4 61065532 61065802 + 3 NA Intergenic Intergenic -77989 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 504-114 chr19 53388113 53388468 + 3 NA Intergenic Intergenic -6843 NM_001350495 91661 Hs.657821 NM_001040185 ENSG00000196417 ZNF765 - zinc finger protein 765 protein-coding 834-40 chr6 66209392 66209957 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 421795 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 432-86 chr15 46609606 46609923 + 3 NA Intergenic L1MCc|LINE|L1 -574325 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 751-6 chr10 65245475 65246016 + 3 NA Intergenic Intergenic -321227 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 235-330 chr7 53459425 53459572 + 3 NA Intergenic L1ME4b|LINE|L1 352433 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 638-120 chr5 52255139 52255584 + 3 NA Intergenic Intergenic 247330 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 763-64 chr8 107531214 107531594 + 3 NA Intergenic MIRb|SINE|MIR -33486 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 547-16 chr10 35711165 35711527 + 3 NA Intergenic Intergenic -66956 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 805-6 chr10 64659099 64659628 + 3 NA Intergenic L1ME1|LINE|L1 -166165 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 331-32 chr1 199701689 199701833 + 3 NA Intergenic MamGypsy2-I|LTR|Gypsy -325949 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 1761-2 chr7 45604410 45605563 + 3 NA intron (NM_001281768, intron 3 of 9) L1MD1|LINE|L1 30618 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 503-90 chr13 110099794 110100065 + 3 NA Intergenic L1ME1|LINE|L1 -21773 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 372-160 chr15 27717639 27717824 + 3 NA Intergenic Intergenic 381584 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 442-261 chr6 131715827 131716061 + 3 NA intron (NR_133007, intron 15 of 23) L1PA15-16|LINE|L1 -4927 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 358-303 chr3 103111724 103111870 + 3 NA Intergenic Intergenic 412319 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 444-279 chr9 25446426 25446681 + 3 NA Intergenic Intergenic 232305 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 405-155 chr2 125079245 125079423 + 3 NA Intergenic Intergenic 1038651 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 562-34 chr11 69549774 69549972 + 3 NA Intergenic L1MEd|LINE|L1 64312 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 556-67 chr14 72344589 72344952 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -172050 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 413-282 chr7 97042642 97042820 + 3 NA Intergenic Intergenic -17900 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 293-463 chr8 139031211 139031339 + 3 NA Intergenic L1ME3A|LINE|L1 -117234 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 452-35 chr10 113962635 113962914 + 3 NA Intergenic AluJr|SINE|Alu -81092 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 330-14 chr1 56921100 56921336 + 3 NA Intergenic (T)n|Simple_repeat|Simple_repeat 44797 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 432-250 chr6 94088819 94089028 + 3 NA Intergenic Intergenic 370620 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 222-42 chr10 76155479 76155586 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 372771 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 297-461 chr8 64947016 64947170 + 3 NA Intergenic Intergenic -148356 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 361-55 chr10 106275370 106275534 + 3 NA Intergenic Intergenic 135287 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 357-469 chr8 139502380 139502529 + 3 NA Intergenic Intergenic 200669 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 578-27 chr10 60635471 60635755 + 3 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) -62657 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 241-38 chr10 60503996 60504121 + 3 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 68898 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 941-3 chr10 62847827 62848213 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -28853 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 225-102 chr15 64995265 64995413 + 3 NA Intergenic MIR|SINE|MIR -5425 NM_001127890 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 527-219 chr5 155190397 155190644 + 3 NA Intergenic Intergenic 176765 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 588-48 chr16 26785633 26785957 + 3 NA Intergenic MER45A|DNA|hAT-Tip100 -281132 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 501-91 chr19 13261582 13261895 + 3 NA intron (NM_023035, intron 25 of 46) intron (NM_023035, intron 25 of 46) 111327 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 614-138 chr8 113405644 113405961 + 3 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) -28650 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 356-199 chr17 70033269 70033524 + 3 NA Intergenic Intergenic -17875 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 212-268 chr5 148652074 148652157 + 3 NA intron (NR_104445, intron 1 of 7) intron (NR_104445, intron 1 of 7) 2412 NR_104445 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 561-210 chr8 125227613 125227918 + 3 NA intron (NM_001349486, intron 5 of 7) L1ME4a|LINE|L1 135905 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 684-56 chr2 115146803 115147161 + 3 NA intron (NR_036580, intron 1 of 2) MLT1A0|LTR|ERVL-MaLR 14361 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 449-271 chr8 83975936 83976181 + 3 NA Intergenic Intergenic -206729 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 922-5 chr11 22143868 22144263 + 3 NA Intergenic Intergenic -49020 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 287-215 chr2 202069416 202069580 + 3 NA Intergenic Intergenic -3757 NM_001277372 100652824 Hs.686898 NM_001080445 ENSG00000182329 KIAA2012 - KIAA2012 protein-coding 720-57 chr3 8132187 8132644 + 3 NA Intergenic Intergenic -116108 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 804-12 chr11 112706672 112706973 + 3 NA Intergenic L1ME4c|LINE|L1 -151020 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 705-4 chr10 23132521 23132970 + 3 NA Intergenic L1MC5|LINE|L1 37166 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 490-98 chr15 69819732 69819915 + 3 NA Intergenic Intergenic -15411 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 1257-2 chr20 19135096 19135730 + 3 NA Intergenic MER77B|LTR|ERVL -77229 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 405-170 chr2 206375458 206375629 + 3 NA Intergenic L1MA7|LINE|L1 -67989 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 619-86 chr3 26429624 26429842 + 3 NA Intergenic Intergenic -193073 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 811-28 chr2 202350602 202351029 + 3 NA Intergenic Intergenic -25512 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 312-190 chr17 67666316 67666487 + 3 NA intron (NM_181671, intron 6 of 9) intron (NM_181671, intron 6 of 9) -51432 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 846-42 chr5 104625597 104626012 + 3 NA Intergenic Intergenic -473670 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 524-100 chr18 67635878 67636141 + 3 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -119289 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 543-221 chr7 8155601 8155878 + 3 NA intron (NM_001350838, intron 6 of 11) intron (NM_001350838, intron 6 of 11) 106313 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 538-61 chr13 39113047 39113369 + 3 NA Intergenic Arthur1A|DNA|hAT-Tip100 74752 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 779-9 chr10 30524153 30524559 + 3 NA Intergenic Intergenic 89710 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 711-48 chr3 101388423 101388888 + 3 NA intron (NM_001282803, intron 3 of 20) L1M2|LINE|L1 -68080 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 929-15 chr18 1461213 1461629 + 3 NA Intergenic Intergenic -101792 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 416-336 chr8 82368894 82369135 + 3 NA Intergenic SATR1|Satellite|Satellite -526728 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 210-259 chr7 30506022 30506163 + 3 NA Intergenic L1MC5a|LINE|L1 -1251 NM_001199816 79017 Hs.530024 NM_024051 ENSG00000006625 GGCT C7orf24|CRF21|GCTG|GGC gamma-glutamylcyclotransferase protein-coding 458-268 chr8 135306561 135306773 + 3 NA Intergenic Intergenic 72536 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 477-288 chr8 117236336 117236552 + 3 NA Intergenic MIRc|SINE|MIR 101449 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 535-228 chr7 70230830 70231084 + 3 NA intron (NM_015570, intron 4 of 18) L1M4a2|LINE|L1 632482 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 740-23 chr12 40784741 40785167 + 3 NA intron (NM_001256063, intron 1 of 15) L1MEd|LINE|L1 -42984 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 259-63 chr10 121116384 121116510 + 3 NA Intergenic L1MEb|LINE|L1 265085 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 482-207 chr5 122507985 122508239 + 3 NA Intergenic L2a|LINE|L2 -29025 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 550-98 chr18 64568455 64568767 + 3 NA Intergenic L1MC1|LINE|L1 -308556 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 156-65 chr3 65929201 65929277 + 3 NA intron (NR_145422, intron 1 of 2) intron (NR_145422, intron 1 of 2) 25319 NR_145422 151877 Hs.476636 NR_145422 ENSG00000272610 MAGI1-IT1 - MAGI1 intronic transcript 1 ncRNA 530-138 chr2 123363892 123364180 + 3 NA Intergenic Intergenic -290555 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 1014-20 chr5 9577549 9578200 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie 29047 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 293-286 chr3 178116669 178116824 + 3 NA Intergenic Intergenic 299881 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 870-19 chr20 58477107 58477460 + 3 NA intron (NR_130908, intron 1 of 1) L1MC4a|LINE|L1 37655 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 293-398 chr7 34048135 34048344 + 3 NA intron (NM_133468, intron 8 of 15) intron (NM_133468, intron 8 of 15) 142700 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 234-121 chr16 71685758 71685849 + 3 NA intron (NM_015020, intron 4 of 18) L1M5|LINE|L1 12898 NR_033337 100379141 Hs.725116 NR_033337 ENSG00000263666 SNORA70D U70D small nucleolar RNA, H/ACA box 70D snoRNA 516-220 chr5 164950524 164950802 + 3 NA Intergenic Intergenic 480384 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 464-122 chr2 80339299 80339527 + 3 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 26034 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 433-174 chr3 96926418 96926720 + 3 NA intron (NM_001080448, intron 2 of 17) THE1D-int|LTR|ERVL-MaLR 111975 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 538-166 chr4 29846510 29846734 + 3 NA Intergenic MER31A|LTR|ERV1 632330 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 636-154 chr8 139183660 139184060 + 3 NA Intergenic L1MA5A|LINE|L1 -269819 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 671-86 chr7 12344244 12344591 + 3 NA exon (NM_001346972, exon 18 of 27) exon (NM_001346972, exon 18 of 27) 59448 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 566-106 chr20 19302796 19303122 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -18363 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 767-5 chr10 17267218 17267632 + 3 NA Intergenic Intergenic -37440 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 952-18 chr20 53464030 53464718 + 3 NA intron (NM_173485, intron 2 of 2) L2b|LINE|L2 -88396 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 832-2 chr1 105538297 105538872 + 3 NA Intergenic Intergenic 80351 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 385-149 chr18 69061416 69061646 + 3 NA Intergenic Intergenic 263451 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 373-198 chr2 88380358 88380609 + 3 NA Intergenic AluJo|SINE|Alu 72210 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 669-123 chrX 58408834 58409208 + 3 NA Intergenic ALR/Alpha|Satellite|centr -498388 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 472-5 chr1 60103935 60104237 + 3 NA Intergenic Intergenic -30316 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 653-72 chr2 134049402 134049749 + 3 NA Intergenic L1MC1|LINE|L1 -70360 NM_001371457 642-89 chr5 10186184 10186506 + 3 NA Intergenic L1PA16|LINE|L1 63543 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 449-216 chr5 106218558 106218791 + 3 NA Intergenic L2a|LINE|L2 792340 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 263-164 chr18 8175289 8175427 + 3 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 191676 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 583-30 chr11 68863141 68863343 + 3 NA Intergenic Intergenic -21311 NM_001031847 1374 Hs.503043 NM_001876 ENSG00000110090 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A protein-coding 473-3 chr1 62023637 62023879 + 3 NA intron (NM_001350145, intron 29 of 43) intron (NM_001350145, intron 29 of 43) -55028 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 316-453 chr5 110334550 110334696 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 179292 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 723-19 chr13 26038152 26038464 + 3 NA Intergenic L1ME3B|LINE|L1 12752 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 928-22 chr4 43884484 43884831 + 3 NA Intergenic Intergenic -132204 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 379-7 chr1 50232592 50232781 + 3 NA Intergenic L2c|LINE|L2 122853 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 643-74 chr3 121543181 121543557 + 3 NA intron (NM_199420, intron 2 of 29) MIR|SINE|MIR 2619 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 532-51 chr12 79573916 79574098 + 3 NA Intergenic LTR12C|LTR|ERV1 116573 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 457-255 chr8 80417173 80417428 + 3 NA Intergenic Intergenic -68293 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 355-279 chr20 15356369 15356578 + 3 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 159633 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 540-109 chr2 51062156 51062382 + 3 NA intron (NR_135237, intron 2 of 10) L1MB5|LINE|L1 29668 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 192-165 chr5 79538288 79538406 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -24213 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 389-283 chr5 22382198 22382393 + 3 NA intron (NM_001364104, intron 2 of 13) (TA)n|Simple_repeat|Simple_repeat -168445 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 545-258 chrX 77441555 77441860 + 3 NA Intergenic Intergenic -5682 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 445-19 chr10 17944113 17944398 + 3 NA Intergenic Intergenic -7584 NM_001282734 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 861-27 chr5 165507955 165508356 + 3 NA Intergenic L1M4|LINE|L1 1037876 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 425-183 chr3 62118814 62118983 + 3 NA intron (NM_002841, intron 5 of 29) intron (NM_002841, intron 5 of 29) 200049 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 607-112 chr5 2260639 2260991 + 3 NA Intergenic Intergenic 51386 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 387-16 chr1 183424856 183425072 + 3 NA Intergenic Intergenic -6584 NM_015039 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 665-90 chr7 39056749 39057126 + 3 NA intron (NM_007252, intron 2 of 10) L1M7|LINE|L1 -43370 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 960-32 chr5 124239344 124239864 + 3 NA intron (NR_125774, intron 4 of 5) MLT1F1|LTR|ERVL-MaLR 198916 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 456-189 chr22 25537297 25537599 + 3 NA Intergenic AluSx|SINE|Alu -27227 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 443-263 chr6 71241217 71241423 + 3 NA Intergenic L1PB1|LINE|L1 -47491 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 714-5 chr1 111676258 111676793 + 3 NA intron (NM_001370217, intron 1 of 7) intron (NM_001370217, intron 1 of 7) 11731 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 395-155 chr19 57530142 57530352 + 3 NA intron (NM_153263, intron 1 of 2) MER21C|LTR|ERVL 2891 NM_001199295 256051 Hs.744289 NM_153263 ENSG00000121406 ZNF549 - zinc finger protein 549 protein-coding 481-248 chr5 45718212 45718476 + 3 NA Intergenic Intergenic -21964 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 321-331 chr20 39770129 39770330 + 3 NA Intergenic L1MEc|LINE|L1 -234232 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 477-124 chr18 11495267 11495461 + 3 NA intron (NR_110778, intron 1 of 2) intron (NR_110778, intron 1 of 2) 5316 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 561-120 chr22 47213496 47213841 + 3 NA Intergenic Intergenic -131903 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 374-256 chr3 114271206 114271360 + 3 NA Intergenic L1PB1|LINE|L1 -22745 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 666-88 chr5 5992250 5992646 + 3 NA Intergenic L1PA15|LINE|L1 344844 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 446-329 chr9 31748962 31749132 + 3 NA Intergenic L1MA9|LINE|L1 -367557 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 662-95 chr8 50263508 50263910 + 3 NA intron (NR_135797, intron 2 of 20) L1M4b|LINE|L1 99578 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 708-66 chr6 24330682 24331119 + 3 NA intron (NM_016356, intron 2 of 9) intron (NM_016356, intron 2 of 9) -26003 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 393-229 chr3 135874666 135874828 + 3 NA Intergenic L1MB1|LINE|L1 -90981 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 468-22 chr10 22362063 22362232 + 3 NA intron (NM_001253854, intron 5 of 13) (AT)n|Simple_repeat|Simple_repeat 16651 NM_172242 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 569-121 chr3 84432831 84433212 + 3 NA Intergenic Intergenic 436554 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 845-24 chr3 102990769 102991151 + 3 NA Intergenic L1MC4a|LINE|L1 533156 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 751-10 chr11 97237585 97237970 + 3 NA Intergenic Intergenic 729352 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 586-67 chr19 37580936 37581168 + 3 NA intron (NR_038250, intron 2 of 2) intron (NR_038250, intron 2 of 2) 13694 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 547-225 chr7 108944978 108945307 + 3 NA Intergenic Intergenic -60555 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 589-22 chr11 131145734 131145939 + 3 NA Intergenic Intergenic -224779 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 599-140 chr9 13730267 13730562 + 3 NA Intergenic L1ME4a|LINE|L1 -197557 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 532-21 chr10 67678444 67678834 + 3 NA intron (NM_013266, intron 1 of 17) L3|LINE|CR1 -12954 NM_001127384 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 682-42 chr18 55207410 55207791 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -83294 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 465-116 chr18 64434845 64435075 + 3 NA Intergenic L1M4|LINE|L1 -174905 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 543-99 chr17 61678294 61678496 + 3 NA TTS (NM_032043) TTS (NM_032043) -87176 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 390-256 chr3 190743458 190743636 + 3 NA Intergenic L1MEd|LINE|L1 119147 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 457-105 chr2 2518943 2519165 + 3 NA Intergenic Intergenic -187779 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 806-3 chr1 104827924 104828389 + 3 NA Intergenic Intergenic 755133 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 931-31 chr9 75545305 75545878 + 3 NA Intergenic Intergenic -345053 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 740-79 chr9 28358011 28358263 + 3 NA intron (NM_001354574, intron 4 of 5) MIR|SINE|MIR 361168 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 721-36 chr2 67105692 67106086 + 3 NA intron (NR_110564, intron 1 of 4) intron (NR_110564, intron 1 of 4) 19443 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 910-23 chr20 15840528 15840898 + 3 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 82601 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 559-6 chr1 157605283 157605587 + 3 NA Intergenic Intergenic -7350 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 599-107 chr5 43693279 43693555 + 3 NA intron (NM_012343, intron 19 of 21) intron (NM_012343, intron 19 of 21) -90187 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 795-61 chr9 27446068 27446423 + 3 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -78069 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 532-272 chr8 78957435 78957802 + 3 NA Intergenic L1MA9|LINE|L1 120089 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 507-140 chr2 162846580 162846838 + 3 NA Intergenic L1MEc|LINE|L1 -7942 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 580-28 chr11 109443990 109444222 + 3 NA Intergenic Intergenic 21916 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 702-69 chr4 44354723 44355087 + 3 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 93904 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 662 chr1 11043599 11043881 + 3 NA intron (NM_006610, intron 4 of 10) intron (NM_006610, intron 4 of 10) 3499 NM_139208 10747 Hs.655645 NM_006610 ENSG00000009724 MASP2 MAP19|MASP-2|MASP1P1|sMAP mannan binding lectin serine peptidase 2 protein-coding 338-61 chr10 58461275 58461516 + 3 NA Intergenic L1MEd|LINE|L1 -51477 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 532-151 chr22 34001717 34001977 + 3 NA Intergenic Intergenic -78959 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 395-355 chr9 79550457 79550624 + 3 NA Intergenic Intergenic -21233 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 461-42 chr10 117639534 117639750 + 3 NA Intergenic L1MC4|LINE|L1 -94574 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 607-84 chr2 185908635 185908966 + 3 NA Intergenic LTR86B2|LTR|ERVL -108649 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 830-37 chr4 48230939 48231318 + 3 NA intron (NM_003215, intron 1 of 17) MER5A|DNA|hAT-Charlie 38710 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 604-50 chr14 87221341 87221712 + 3 NA Intergenic AluSx3|SINE|Alu 315748 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 273-210 chr2 39711299 39711472 + 3 NA intron (NM_152390, intron 3 of 3) MamRep4096|DNA|hAT-Tip100 45468 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 591-38 chr14 67493924 67494328 + 3 NA intron (NM_001348546, intron 1 of 2) intron (NM_001348546, intron 1 of 2) -5405 NM_001348543 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 508-8 chr1 103169903 103170229 + 3 NA Intergenic Intergenic -61544 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 456-234 chr4 133387926 133388124 + 3 NA Intergenic Intergenic 238731 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 441-97 chr17 80717275 80717472 + 3 NA intron (NM_020761, intron 4 of 33) L2a|LINE|L2 88259 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 587-77 chr2 134614242 134614524 + 3 NA intron (NM_030923, intron 2 of 7) L1M4|LINE|L1 104617 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 465-49 chr11 43765011 43765282 + 3 NA intron (NM_016142, intron 3 of 10) L1MEc|LINE|L1 84408 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 632-78 chr3 115708863 115709146 + 3 NA intron (NM_002045, intron 2 of 2) intron (NM_002045, intron 2 of 2) 85494 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 704-61 chr4 97766325 97766746 + 3 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 376941 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 588-41 chr14 80969895 80970259 + 3 NA intron (NM_001142626, intron 1 of 8) ERVL-E-int|LTR|ERVL 14456 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 625-16 chr10 111228468 111228810 + 3 NA Intergenic L2b|LINE|L2 114348 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 523-251 chr6 145473939 145474257 + 3 NA Intergenic L1M1|LINE|L1 212779 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 816-14 chr16 54700697 54701188 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR 147291 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 1154-8 chr3 28946129 28946750 + 3 NA Intergenic Intergenic 334500 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 931-28 chr8 136969575 136970261 + 3 NA Intergenic Intergenic 439120 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 522-8 chr1 167909569 167909848 + 3 NA intron (NM_018417, intron 1 of 32) L1ME3A|LINE|L1 4426 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 668-78 chr5 11567021 11567363 + 3 NA intron (NM_001288717, intron 2 of 20) AluYj4|SINE|Alu 21725 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 426-157 chr2 234790675 234790877 + 3 NA Intergenic Intergenic 108108 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 478-207 chr4 60090923 60091188 + 3 NA Intergenic L1M4|LINE|L1 -831564 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 728-73 chr5 85685735 85686221 + 3 NA Intergenic L1M4|LINE|L1 -596466 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 479-207 chr5 158296536 158296843 + 3 NA Intergenic Intergenic 113084 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 928-12 chr19 34955922 34956442 + 3 NA TTS (NM_175872) TTS (NM_175872) 8047 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 605-106 chr7 8606992 8607289 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 173531 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 715-2 chr1 227600128 227600433 + 3 NA intron (NR_102302, intron 2 of 5) L1PA13|LINE|L1 36724 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 555-146 chr4 69564731 69564968 + 3 NA Intergenic L1M1|LINE|L1 -38835 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 792-9 chr10 86119214 86119695 + 3 NA intron (NM_017551, intron 4 of 15) L1MC3|LINE|L1 145334 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 466-170 chr3 7468878 7469225 + 3 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) 66233 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 691-10 chr11 25333386 25333825 + 3 NA Intergenic LTR56|LTR|ERV1 836552 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 539-51 chr12 33615800 33616031 + 3 NA Intergenic L1MC4|LINE|L1 -176096 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 396-133 chr18 41164001 41164174 + 3 NA Intergenic L2c|LINE|L2 356590 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 555-124 chr3 2536181 2536442 + 3 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 297482 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 500-90 chr15 26509826 26509999 + 3 NA Intergenic L1M4|LINE|L1 119178 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 835-19 chr14 72305815 72306253 + 3 NA intron (NM_001370288, intron 2 of 16) Tigger1|DNA|TcMar-Tigger -210786 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 529-90 chr18 34460987 34461182 + 3 NA Intergenic Intergenic -32206 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 609-54 chr2 34199365 34199663 + 3 NA intron (NR_126403, intron 4 of 5) HSMAR2|DNA|TcMar-Mariner 132288 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 500-118 chr19 37610649 37610984 + 3 NA intron (NM_001172225, intron 4 of 4) MER5B|DNA|hAT-Charlie 15940 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 429-161 chr2 128610540 128610795 + 3 NA Intergenic Intergenic -253933 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 453-294 chr9 5223071 5223284 + 3 NA Intergenic L1PA11|LINE|L1 -8242 NM_002195 3641 Hs.418506 NM_002195 ENSG00000120211 INSL4 EPIL|PLACENTIN insulin like 4 protein-coding 475-34 chr11 21189403 21189615 + 3 NA intron (NM_201551, intron 13 of 18) L2c|LINE|L2 519923 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 624-8 chr1 192396205 192396518 + 3 NA Intergenic Intergenic 79369 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 546-39 chr11 55034839 55035140 + 3 NA Intergenic ALR/Alpha|Satellite|centr -227166 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 539-177 chr6 45395847 45396079 + 3 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) -18029 NM_001350324 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 524-159 chr3 169758090 169758393 + 3 NA Intergenic Intergenic 6819 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 409-39 chr11 69517876 69518171 + 3 NA Intergenic L1MA9|LINE|L1 32462 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 1076-13 chr2 58829238 58829882 + 3 NA intron (NR_033873, intron 2 of 13) L1M1|LINE|L1 308807 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 659-38 chr17 32395954 32396364 + 3 NA Intergenic AluSx|SINE|Alu 46021 NM_003457 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 446-143 chr2 54175866 54176142 + 3 NA intron (NM_138448, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR 52721 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 483-225 chr6 54122673 54122888 + 3 NA intron (NM_001281746, intron 2 of 11) intron (NM_001281746, intron 2 of 11) 11337 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 555-8 chr1 221331656 221331954 + 3 NA non-coding (NR_024236, exon 2 of 2) non-coding (NR_024236, exon 2 of 2) 4491 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 526-46 chr11 80793928 80794256 + 3 NA Intergenic Intergenic -31289 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 526-98 chr17 62334141 62334347 + 3 NA Intergenic L2a|LINE|L2 -35974 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 312-485 chr7 47955744 47955876 + 3 NA Intergenic L1ME4a|LINE|L1 -7319 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 719-52 chr3 156027344 156027690 + 3 NA Intergenic Intergenic -93031 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 893-4 chr10 39102081 39102483 + 3 NA Intergenic ALR/Alpha|Satellite|centr 405686 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 419 chr1 34438036 34438222 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 231565 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 651-8 chr1 194922013 194922379 + 3 NA Intergenic HERVL-int|LTR|ERVL 1166519 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 326-249 chr2 83733150 83733270 + 3 NA Intergenic Intergenic 210396 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 538-127 chr2 153219844 153220074 + 3 NA Intergenic MIRc|SINE|MIR 258803 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 857-34 chr22 27005726 27006119 + 3 NA Intergenic MER20|DNA|hAT-Charlie 54596 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 434-266 chr7 79249876 79250159 + 3 NA intron (NM_001301128, intron 1 of 20) L1MA3|LINE|L1 -202940 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 278-23 chr1 231992736 231992902 + 3 NA intron (NM_001164538, intron 10 of 10) intron (NM_001164538, intron 10 of 10) 66985 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 928-33 chr9 30653264 30653711 + 3 NA Intergenic Intergenic -245033 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 351-517 chr9 85478988 85479161 + 3 NA Intergenic Intergenic 262955 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 499-275 chr8 138255272 138255599 + 3 NA intron (NM_015912, intron 5 of 19) intron (NM_015912, intron 5 of 19) -171890 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 362-4 chr1 33555704 33555918 + 3 NA intron (NM_052896, intron 54 of 69) Tigger1|DNA|TcMar-Tigger 83166 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 503-283 chr8 109622935 109623153 + 3 NA intron (NM_001099746, intron 1 of 5) (CA)n|Simple_repeat|Simple_repeat -14982 NM_001330596 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 639-37 chr14 55468674 55469129 + 3 NA Intergenic L1MA10|LINE|L1 -28356 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 385-163 chr2 11989102 11989284 + 3 NA Intergenic Intergenic -17923 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 492-282 chr9 80102141 80102360 + 3 NA Intergenic L1MB7|LINE|L1 127227 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 345-323 chr21 27685986 27686143 + 3 NA Intergenic L1M4|LINE|L1 -36315 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 750-34 chr2 67684440 67684919 + 3 NA Intergenic Intergenic 140883 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 297-95 chr12 7951705 7951914 + 3 NA Intergenic MLT1-int|LTR|ERVL-MaLR -15622 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 540-224 chr9 36812879 36813063 + 3 NA Intergenic Intergenic 10628 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 530-168 chr3 100959654 100959835 + 3 NA intron (NM_001349332, intron 1 of 35) L1MCc|LINE|L1 33746 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 423-112 chr18 50760688 50760864 + 3 NA Intergenic Intergenic 59240 NM_031939 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 355-153 chr14 56011579 56011814 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -106715 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 692-58 chr20 55819992 55820287 + 3 NA Intergenic MER103C|DNA|hAT-Charlie 185380 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 485-85 chr14 85719317 85719640 + 3 NA Intergenic L1M4a1|LINE|L1 186129 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 641-22 chr11 111466094 111466421 + 3 NA Intergenic Intergenic -44345 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 451-135 chr21 30081004 30081182 + 3 NA Intergenic Intergenic 85712 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 269-379 chr7 30949769 30949950 + 3 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -14094 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 380-14 chr1 94371300 94371469 + 3 NA Intergenic L1MD|LINE|L1 -46993 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 658-134 chr9 31623594 31624036 + 3 NA Intergenic Intergenic -242325 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 598-90 chr3 90138910 90139247 + 3 NA Intergenic Intergenic 1031457 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 245-164 chr18 6732488 6732643 + 3 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -2703 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 460-282 chr8 37377925 37378091 + 3 NA Intergenic Intergenic 115905 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 370-259 chr2 198213574 198213840 + 3 NA Intergenic Intergenic 161390 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 607-133 chr7 27750590 27750876 + 3 NA intron (NM_001362794, intron 2 of 16) intron (NM_001362794, intron 2 of 16) 10638 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 471-59 chr12 4049774 4050054 + 3 NA Intergenic Intergenic -176466 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 215-275 chr6 39667552 39667638 + 3 NA intron (NM_001289020, intron 3 of 21) Ricksha|DNA|MULE-MuDR 57813 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 632-20 chr12 18340633 18340922 + 3 NA intron (NM_001288774, intron 9 of 32) MIR|SINE|MIR 79237 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 1361 chr1 113156964 113157678 + 3 NA Intergenic AluJr|SINE|Alu 48932 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 412-308 chr7 50949861 50950098 + 3 NA Intergenic L1M2a|LINE|L1 -156526 NM_001371008 918-7 chr11 128384424 128384804 + 3 NA Intergenic Intergenic 137696 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 267-377 chr6 108012325 108012513 + 3 NA Intergenic L1MA1|LINE|L1 -54211 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 444-242 chr7 48199667 48199880 + 3 NA intron (NM_152701, intron 3 of 61) intron (NM_152701, intron 3 of 61) 28315 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 457-109 chr2 34463096 34463292 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR -214363 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 542-185 chr6 34006173 34006390 + 3 NA Intergenic LTR104_Mam|LTR|Gypsy -6230 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 500-235 chr5 98708115 98708371 + 3 NA Intergenic Intergenic -60389 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 659-34 chr15 96918519 96918846 + 3 NA Intergenic MIRb|SINE|MIR 135247 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 500-23 chr10 25308554 25308774 + 3 NA intron (NM_020752, intron 2 of 10) L1MB3|LINE|L1 -132388 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 436-52 chr11 81053480 81053701 + 3 NA Intergenic Intergenic -290787 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 475-49 chr11 114786293 114786565 + 3 NA Intergenic Intergenic 107902 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 532-17 chr10 23560402 23560589 + 3 NA Intergenic L1MD1|LINE|L1 121226 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 520-259 chr6 94061895 94062155 + 3 NA Intergenic Intergenic 343722 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 462-170 chr3 13812639 13812809 + 3 NA Intergenic MIR|SINE|MIR 67347 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 910-36 chr7 88309527 88310012 + 3 NA Intergenic Intergenic -2875 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 429-292 chr8 50568276 50568506 + 3 NA intron (NR_135795, intron 12 of 18) L1MA6|LINE|L1 404260 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 574-47 chr15 101583048 101583378 + 3 NA Intergenic L1MD1|LINE|L1 31126 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 529-74 chr16 6996224 6996404 + 3 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 222505 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 370-239 chr2 102251583 102251732 + 3 NA Intergenic Intergenic -59845 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 401-59 chr12 23523808 23524108 + 3 NA Intergenic L1MEg|LINE|L1 60628 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 624-59 chr2 66874775 66875057 + 3 NA Intergenic Intergenic -29520 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 465-90 chr15 88749642 88749896 + 3 NA Intergenic Intergenic -53667 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 440-222 chr6 121670888 121671100 + 3 NA Intergenic Intergenic 235348 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 545-123 chr2 172314555 172314923 + 3 NA Intergenic Intergenic -112597 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 851-36 chr5 108500296 108500651 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -118375 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 430-328 chr9 23059001 23059242 + 3 NA Intergenic Intergenic 412921 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 502-265 chr8 84457518 84457765 + 3 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 42157 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 421-140 chr2 79556632 79556877 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 33571 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 472-156 chr2 96480936 96481156 + 3 NA Intergenic L1MB5|LINE|L1 24311 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 543 chr1 18066589 18066979 + 3 NA intron (NR_125946, intron 1 of 2) intron (NR_125946, intron 1 of 2) 1127 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 434-276 chr8 47281273 47281462 + 3 NA intron (NM_001352956, intron 2 of 16) Tigger1|DNA|TcMar-Tigger 20429 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 463-173 chr21 32248911 32249128 + 3 NA Intergenic Intergenic 30030 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 810-58 chr8 122992297 122992639 + 3 NA Intergenic AluSx|SINE|Alu 33304 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 480-31 chr10 56293998 56294258 + 3 NA Intergenic Intergenic 67131 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 843-20 chr17 56065997 56066536 + 3 NA Intergenic Intergenic -87209 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 506-308 chrX 121432988 121433338 + 3 NA Intergenic L2a|LINE|L2 62191 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 378-116 chr13 55164007 55164164 + 3 NA Intergenic Intergenic -10369 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 537-24 chr10 54160967 54161224 + 3 NA intron (NM_001354411, intron 14 of 34) L1ME1|LINE|L1 -325135 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 523-70 chr13 29907212 29907440 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger -18921 NR_046510 100874059 Hs.569261 NR_046510 ENSG00000224329 LINC00297 NCRNA00297 long intergenic non-protein coding RNA 297 ncRNA 448-162 chr3 81205403 81205580 + 3 NA Intergenic Intergenic 211623 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 463-234 chr5 57283688 57283918 + 3 NA Intergenic L1MA2|LINE|L1 69729 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 753-12 chr10 107108709 107109106 + 3 NA intron (NM_001206569, intron 1 of 25) MSTA-int|LTR|ERVL-MaLR 55799 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 567-136 chr4 144257802 144258064 + 3 NA Intergenic Intergenic -117215 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 298-148 chr15 95190063 95190213 + 3 NA Intergenic L1PA16|LINE|L1 136962 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 951 chr1 47197204 47197631 + 3 NA Intergenic Tigger4b|DNA|TcMar-Tigger -7381 NM_005764 10158 Hs.431099 NM_005764 ENSG00000162366 PDZK1IP1 DD96|MAP17|SPAP PDZK1 interacting protein 1 protein-coding 855-40 chr5 82032659 82033040 + 3 NA intron (NM_031482, intron 2 of 7) MIR|SINE|MIR 60826 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 318-475 chr6 53838752 53838927 + 3 NA intron (NM_018214, intron 1 of 13) intron (NM_018214, intron 1 of 13) 43834 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 373-254 chr3 4958887 4959085 + 3 NA intron (NR_125915, intron 1 of 3) L1ME2|LINE|L1 -20451 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 629-145 chr9 117565899 117566191 + 3 NA Intergenic L2a|LINE|L2 -82561 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 483-59 chr14 33613660 33613943 + 3 NA intron (NM_001165893, intron 4 of 10) L2c|LINE|L2 -95136 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 400-303 chr6 39420149 39420348 + 3 NA intron (NM_001289020, intron 14 of 21) intron (NM_001289020, intron 14 of 21) 11142 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 405-351 chr9 117764438 117764582 + 3 NA Intergenic L2a|LINE|L2 60107 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 554-187 chr6 169430873 169431107 + 3 NA Intergenic MER65C|LTR|ERV1 -176876 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 493-14 chr1 158108596 158108799 + 3 NA Intergenic Intergenic 31943 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 636-93 chr3 74861904 74862387 + 3 NA Intergenic MIRc|SINE|MIR -341005 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 478-218 chr4 123292026 123292241 + 3 NA intron (NM_001345856, intron 15 of 15) L1PB3|LINE|L1 -104662 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 601-134 chr6 81589363 81589801 + 3 NA Intergenic Intergenic 163099 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 602-87 chr3 68504096 68504483 + 3 NA intron (NR_135532, intron 1 of 1) intron (NR_135532, intron 1 of 1) 3652 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 400-84 chr14 25341347 25341626 + 3 NA Intergenic L1PA7|LINE|L1 -291189 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 557-56 chr15 81249194 81249467 + 3 NA intron (NM_001352686, intron 2 of 18) L1ME3E|LINE|L1 -47640 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 846-28 chr20 19246207 19246780 + 3 NA intron (NR_024564, intron 6 of 7) L1MEd|LINE|L1 33851 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 596-133 chr5 141195411 141195670 + 3 NA 3' UTR (NM_018930, exon 1 of 1) 3' UTR (NM_018930, exon 1 of 1) 3187 NM_018930 56126 Hs.657953 NM_018930 ENSG00000120324 PCDHB10 PCDH-BETA10|PCHB10 protocadherin beta 10 protein-coding 593-8 chr1 115142753 115143151 + 3 NA Intergenic Intergenic -53449 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 481-193 chr3 32825870 32826047 + 3 NA intron (NM_001039111, intron 1 of 3) intron (NM_001039111, intron 1 of 3) 7961 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 524-20 chr1 218207568 218207757 + 3 NA Intergenic Intergenic -77631 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 496-56 chr12 43022479 43022864 + 3 NA Intergenic Intergenic -132644 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 790-27 chr2 184050603 184051115 + 3 NA Intergenic Intergenic -328116 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 381-98 chr14 25275861 25276032 + 3 NA Intergenic Intergenic -225649 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 348-315 chr3 106625214 106625425 + 3 NA Intergenic MER45B|DNA|hAT-Tip100 615319 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 380-206 chr2 222637712 222637875 + 3 NA intron (NR_130154, intron 6 of 17) AluJr4|SINE|Alu 18299 NM_005687 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 341-406 chr4 162753448 162753668 + 3 NA Intergenic Intergenic 340070 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 559-70 chr17 34765402 34765715 + 3 NA Intergenic Intergenic 184809 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 312-344 chr3 123646129 123646297 + 3 NA intron (NM_001321309, intron 26 of 32) L1ME4b|LINE|L1 -25665 NM_053031 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 417-228 chr5 128756895 128757057 + 3 NA Intergenic L2a|LINE|L2 -208151 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 819-3 chr10 43637406 43637826 + 3 NA intron (NR_038867, intron 1 of 4) (ATTTTAT)n|Simple_repeat|Simple_repeat -6256 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 396-63 chr10 116586220 116586429 + 3 NA Intergenic Intergenic -4635 NM_006229 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 976-11 chr2 29460299 29460719 + 3 NA intron (NM_004304, intron 4 of 28) Tigger1|DNA|TcMar-Tigger 14868 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 858-20 chr18 13942826 13943341 + 3 NA Intergenic Intergenic -27376 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 429-156 chr2 98806376 98806588 + 3 NA intron (NM_207362, intron 7 of 9) MIR3|SINE|MIR -34584 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 190-176 chr8 89578100 89578169 + 3 NA Intergenic L1MD1|LINE|L1 179577 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 469-293 chr8 138619078 138619377 + 3 NA intron (NM_152888, intron 53 of 64) intron (NM_152888, intron 53 of 64) -121497 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 436-173 chr22 33635615 33635916 + 3 NA intron (NM_133642, intron 3 of 14) intron (NM_133642, intron 3 of 14) 69155 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 630-126 chr7 41790049 41790414 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -87141 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 509-70 chr14 29269254 29269481 + 3 NA Intergenic L1MC5|LINE|L1 -483580 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 551-196 chr7 97486050 97486412 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -245855 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 422-197 chr3 153479703 153479918 + 3 NA intron (NR_146713, intron 5 of 6) intron (NR_146713, intron 5 of 6) -4685 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 1201-3 chr19 31526119 31526822 + 3 NA Intergenic MIRb|SINE|MIR -61719 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 486-8 chr1 97017346 97017662 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X -78419 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 406-31 chr10 19905518 19905699 + 3 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 89176 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 396-323 chr7 13714620 13714871 + 3 NA Intergenic Intergenic 271769 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 482-212 chr5 146903080 146903369 + 3 NA intron (NM_001271900, intron 2 of 10) Charlie1b|DNA|hAT-Charlie 16282 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 424-124 chr2 23144891 23145057 + 3 NA Intergenic Intergenic -240205 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 388-229 chr3 88601673 88601882 + 3 NA Intergenic Intergenic 263321 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 615-155 chrX 83026580 83026838 + 3 NA Intergenic L1MA2|LINE|L1 -481581 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 375-409 chr8 99720748 99720896 + 3 NA intron (NM_017890, intron 38 of 61) intron (NM_017890, intron 38 of 61) 172885 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 642-48 chr19 28341445 28341785 + 3 NA Intergenic Intergenic -265073 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 693-76 chr4 173631962 173632385 + 3 NA Intergenic L1ME1|LINE|L1 101715 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 614-51 chr2 60018395 60018765 + 3 NA Intergenic L1ME3B|LINE|L1 364456 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 752-34 chr19 24376509 24376935 + 3 NA Intergenic ALR/Alpha|Satellite|centr -213275 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 358-138 chr15 91276378 91276515 + 3 NA intron (NM_001323036, intron 8 of 11) L1MEf|LINE|L1 174650 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 881-29 chr3 188999480 188999843 + 3 NA Intergenic MIR|SINE|MIR -52022 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 636-90 chr3 8519140 8519632 + 3 NA intron (NM_001278233, intron 1 of 4) intron (NM_001278233, intron 1 of 4) 17563 NM_001278235 29995 Hs.475353 NM_014583 ENSG00000071282 LMCD1 - LIM and cysteine rich domains 1 protein-coding 561-204 chr8 112104465 112104734 + 3 NA Intergenic L1M4c|LINE|L1 -538894 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 455-114 chr19 53148635 53148815 + 3 NA exon (NM_001172674, exon 4 of 5) exon (NM_001172674, exon 4 of 5) 10328 NM_032584 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 491-214 chr5 88384848 88385048 + 3 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) -7247 NR_105020 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 483-103 chr2 14938372 14938577 + 3 NA Intergenic MIRb|SINE|MIR 305757 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 880-16 chr18 13854982 13855392 + 3 NA Intergenic L1MCc|LINE|L1 31038 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 486-70 chr13 104555601 104555812 + 3 NA Intergenic Intergenic -910161 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 527-71 chr13 103967905 103968090 + 3 NA Intergenic L2a|LINE|L2 542797 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 491-241 chr7 21660317 21660510 + 3 NA intron (NM_001277115, intron 30 of 81) intron (NM_001277115, intron 30 of 81) 117374 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 472-28 chr10 16353779 16354048 + 3 NA Intergenic L2|LINE|L2 -83030 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 606-136 chr5 131845786 131846073 + 3 NA intron (NM_001303622, intron 11 of 12) L1MB7|LINE|L1 -48912 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 304-425 chr5 100949044 100949181 + 3 NA Intergenic Intergenic -45830 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 585-67 chr2 15304631 15304975 + 3 NA intron (NR_052013, intron 40 of 50) THE1D-int|LTR|ERVL-MaLR 256531 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 351-165 chr16 74204225 74204454 + 3 NA intron (NR_104657, intron 3 of 3) intron (NR_104657, intron 3 of 3) 11182 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 741-7 chr10 31298610 31298977 + 3 NA Intergenic Intergenic -19624 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 625-51 chr2 101948307 101948697 + 3 NA Intergenic Intergenic -34963 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 629-44 chr14 83961268 83961699 + 3 NA Intergenic Intergenic -1310449 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 457-190 chr4 161080530 161080817 + 3 NA Intergenic Intergenic -942060 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 485-93 chr16 47831636 47831930 + 3 NA Intergenic L2c|LINE|L2 -26798 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 496-212 chr5 59407925 59408305 + 3 NA intron (NM_001165899, intron 3 of 16) MSTB-int|LTR|ERVL-MaLR -51145 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 508-136 chr21 23297373 23297575 + 3 NA Intergenic L1MC5|LINE|L1 87361 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 540-88 chr16 49968905 49969281 + 3 NA Intergenic Intergenic -56113 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 410-163 chr20 23792442 23792616 + 3 NA Intergenic L1PBa|LINE|L1 34200 NM_001322 1470 Hs.669305 NM_001322 ENSG00000170369 CST2 - cystatin SA protein-coding 652-31 chr12 40546879 40547265 + 3 NA intron (NM_173600, intron 150 of 173) intron (NM_173600, intron 150 of 173) -145367 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 449-143 chr20 43058602 43058814 + 3 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 89965 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 976-24 chr7 85786903 85787440 + 3 NA Intergenic AluSz|SINE|Alu 366049 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 701-67 chr4 35884773 35885127 + 3 NA Intergenic Intergenic 358989 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 475-252 chr7 5070883 5071074 + 3 NA intron (NM_001204513, intron 4 of 5) AluY|SINE|Alu -1082 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 404-272 chr6 50160294 50160541 + 3 NA Intergenic Intergenic -110488 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 288-455 chr8 131183439 131183664 + 3 NA Intergenic L1P4|LINE|L1 -142642 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 175-55 chr15 91973269 91973389 + 3 NA intron (NR_135775, intron 2 of 10) MIR|SINE|MIR 119025 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 241-403 chr8 120417913 120418021 + 3 NA intron (NM_014078, intron 5 of 6) intron (NM_014078, intron 5 of 6) 27183 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 474-315 chrX 86077162 86077364 + 3 NA Intergenic Intergenic -29705 NM_000390 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM Rab escort protein protein-coding 444-281 chr9 31938456 31938698 + 3 NA Intergenic Charlie1|DNA|hAT-Charlie -446026 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 534-254 chr8 75531269 75531576 + 3 NA intron (NM_001330561, intron 3 of 11) intron (NM_001330561, intron 3 of 11) -8546 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 414-70 chr12 54785074 54785231 + 3 NA Intergenic L1M2|LINE|L1 -69364 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 561-173 chr5 180220703 180221038 + 3 NA Intergenic AluJr|SINE|Alu -11659 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 1002-14 chr5 41966449 41966975 + 3 NA Intergenic Intergenic 41431 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 479-121 chr2 241022267 241022427 + 3 NA intron (NM_001080437, intron 1 of 31) L1MB8|LINE|L1 23729 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 477-166 chr2 155190230 155190406 + 3 NA Intergenic Intergenic 491623 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 426-244 chr5 113828210 113828477 + 3 NA Intergenic MIRb|SINE|MIR 314649 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 505-237 chr5 39213094 39213333 + 3 NA intron (NM_001349333, intron 1 of 19) MIRc|SINE|MIR 6350 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 326-285 chr2 240532300 240532441 + 3 NA intron (NR_148698, intron 3 of 5) L1ME1|LINE|L1 25618 NM_017844 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 599-24 chr11 82977137 82977564 + 3 NA 3' UTR (NM_001286060, exon 5 of 5) 3' UTR (NM_001286060, exon 5 of 5) 56924 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 442-25 chr10 49399462 49399749 + 3 NA Intergenic Intergenic -3516 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 497-74 chr14 31622598 31622900 + 3 NA intron (NM_001201573, intron 2 of 8) THE1D-int|LTR|ERVL-MaLR 44833 NM_001201573 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 361-42 chr10 52494393 52494637 + 3 NA Intergenic Intergenic -23982 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 524-75 chr16 36006074 36006391 + 3 NA Intergenic ALR/Alpha|Satellite|centr 259680 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 473-254 chr7 12461167 12461377 + 3 NA Intergenic L1M4|LINE|L1 -35157 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 458-101 chr17 58922237 58922417 + 3 NA intron (NM_014906, intron 1 of 6) AluJr|SINE|Alu 166458 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 506-171 chr21 16096463 16096735 + 3 NA intron (NR_111005, intron 1 of 6) MIR|SINE|MIR 25485 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 452-37 chr11 5892918 5893201 + 3 NA Intergenic Intergenic -7706 NM_001005166 390082 NM_001005166 ENSG00000277932 OR52E5 OR11-56 olfactory receptor family 52 subfamily E member 5 protein-coding 481-235 chr5 3721078 3721293 + 3 NA Intergenic L1PA10|LINE|L1 125353 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 451-108 chr19 56531041 56531268 + 3 NA TTS (NM_020813) TTS (NM_020813) -7794 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 508-204 chr6 40858466 40858764 + 3 NA Intergenic L1PB1|LINE|L1 164665 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 525-62 chr12 129063233 129063576 + 3 NA Intergenic Intergenic -46286 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 1272 chr11 54925072 54925743 + 3 NA Intergenic ALR/Alpha|Satellite|centr 218575 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 430-284 chr7 46382928 46383153 + 3 NA Intergenic L1MCa|LINE|L1 314082 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 530-163 chr3 65628980 65629382 + 3 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -264635 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 751-78 chr8 23604159 23604503 + 3 NA Intergenic L1MD3|LINE|L1 75375 NM_001317814 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 397-115 chr17 28086590 28086861 + 3 NA intron (NM_016231, intron 1 of 10) intron (NM_016231, intron 1 of 10) 44048 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 490-288 chr8 82128776 82129051 + 3 NA Intergenic Intergenic -286627 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 497-283 chr8 100601058 100601342 + 3 NA intron (NM_152628, intron 8 of 13) MIR|SINE|MIR 17205 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 951-30 chr8 82878964 82879499 + 3 NA Intergenic Intergenic -32873 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 283-244 chr2 136510243 136510399 + 3 NA Intergenic Intergenic -255224 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 445-89 chr16 51719768 51720012 + 3 NA Intergenic Intergenic -42629 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 746-66 chr6 142903985 142904516 + 3 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 40926 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 382-366 chr6 152683362 152683579 + 3 NA Intergenic Intergenic -14425 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 475-50 chr11 133742575 133742827 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 67675 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 709-90 chr8 83038497 83038828 + 3 NA Intergenic Intergenic 126558 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 390-424 chr9 106021937 106022160 + 3 NA Intergenic L2c|LINE|L2 327507 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 463-310 chr9 90482123 90482375 + 3 NA intron (NR_034157, intron 5 of 5) intron (NR_034157, intron 5 of 5) -48760 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 594-159 chr9 10103227 10103565 + 3 NA intron (NM_002839, intron 3 of 45) (AT)n|Simple_repeat|Simple_repeat 304004 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 323-77 chr11 29969888 29970034 + 3 NA Intergenic Intergenic 12432 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 1120-4 chr15 99774642 99775279 + 3 NA Intergenic Intergenic 31967 NR_003260 196968 Hs.567763 NM_194295 ENSG00000182397 DNM1P46 C15orf51|DNM1DN14.2|DNM1DN14@ dynamin 1 pseudogene 46 pseudo 456-352 chrX 77402251 77402516 + 3 NA Intergenic Intergenic -45006 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 687-58 chr2 49565919 49566360 + 3 NA Intergenic Intergenic 408064 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 569-169 chr7 52738803 52739033 + 3 NA Intergenic L1MC1|LINE|L1 -296715 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 547-107 chr2 127600919 127601157 + 3 NA intron (NM_001080527, intron 19 of 46) L1MD1|LINE|L1 -30076 NR_132317 105373609 Hs.677195 NR_132317 LOC105373609 - uncharacterized LOC105373609 ncRNA 537-96 chr19 28811489 28811812 + 3 NA Intergenic Intergenic -83956 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 757-41 chr3 156877440 156877772 + 3 NA intron (NM_001004316, intron 3 of 12) L1PB1|LINE|L1 51253 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 394-167 chr2 58676472 58676683 + 3 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 155824 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 669-68 chr21 14549417 14549824 + 3 NA intron (NM_001256370, intron 2 of 8) intron (NM_001256370, intron 2 of 8) -3260 NM_001286523 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 549-114 chr2 126054904 126055225 + 3 NA Intergenic L1PB4|LINE|L1 62921 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 1054-17 chr7 64590529 64591165 + 3 NA intron (NR_077227, intron 1 of 2) intron (NR_077227, intron 1 of 2) 8237 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 1146-3 chr11 21389811 21390442 + 3 NA intron (NM_201551, intron 15 of 18) L1ME3A|LINE|L1 720540 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 500-108 chr17 79240411 79240666 + 3 NA intron (NM_001082575, intron 3 of 14) MIRb|SINE|MIR 165601 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 650-44 chr19 36710511 36710872 + 3 NA intron (NM_001363651, intron 1 of 4) intron (NM_001363651, intron 1 of 4) 7010 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 434-161 chr2 209806654 209806920 + 3 NA intron (NM_032504, intron 7 of 63) intron (NM_032504, intron 7 of 63) 34794 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 683-56 chr3 187146830 187147365 + 3 NA Intergenic Intergenic -7601 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 774-91 chr9 17252358 17252820 + 3 NA intron (NM_001365029, intron 5 of 25) L1MA4A|LINE|L1 117549 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 258-440 chrX 97239218 97239423 + 3 NA intron (NM_007309, intron 22 of 26) intron (NM_007309, intron 22 of 26) 325215 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 315-278 chr20 42039158 42039308 + 3 NA Intergenic L1MA9|LINE|L1 -420856 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 781-64 chr8 118265689 118266132 + 3 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -154091 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 295-405 chr6 54395762 54395908 + 3 NA Intergenic Intergenic 87394 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 431-19 chr1 182605975 182606141 + 3 NA Intergenic Intergenic -1669 NM_002928 6004 Hs.413297 NM_002928 ENSG00000143333 RGS16 A28-RGS14|A28-RGS14P|RGS-R regulator of G protein signaling 16 protein-coding 430-249 chr5 107320565 107320830 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -309683 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 345-102 chr11 115811150 115811334 + 3 NA Intergenic Intergenic -51042 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 487-57 chr11 59303918 59304110 + 3 NA Intergenic L1M2|LINE|L1 -60445 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 807-44 chr7 3288168 3288647 + 3 NA Intergenic Intergenic -12845 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 537-137 chr20 4281235 4281585 + 3 NA Intergenic Intergenic -32123 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 576-92 chr2 156929383 156929669 + 3 NA Intergenic Intergenic -328179 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 758-44 chr2 115478644 115479180 + 3 NA intron (NM_001321912, intron 4 of 25) L1MB3|LINE|L1 135097 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 270-109 chr14 57460228 57460379 + 3 NA Intergenic L1ME4b|LINE|L1 33554 NM_001283059 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 429-212 chr4 98765484 98765739 + 3 NA Intergenic L1MB7|LINE|L1 106709 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 461-185 chr4 30893632 30893808 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 173351 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 562-116 chr2 145221479 145221698 + 3 NA Intergenic Intergenic 553621 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 396-366 chr9 15652835 15653009 + 3 NA intron (NM_001355547, intron 6 of 24) intron (NM_001355547, intron 6 of 24) 88944 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 590-119 chr4 31359635 31360038 + 3 NA Intergenic Charlie1|DNA|hAT-Charlie -146708 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 877-20 chr3 99865201 99865747 + 3 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) 10699 NM_001370247 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 572-64 chr16 6474839 6475077 + 3 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -298851 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 640-99 chr4 96892118 96892481 + 3 NA Intergenic Intergenic -474627 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 495-33 chr11 25364253 25364448 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -824773 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 678-81 chr4 114043878 114044305 + 3 NA Intergenic Intergenic -64444 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 463-224 chr5 15779521 15779699 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -155572 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 411-15 chr1 209705840 209706010 + 3 NA exon (NM_005525, exon 2 of 6) exon (NM_005525, exon 2 of 6) 1079 NM_005525 3290 Hs.195040 NM_005525 ENSG00000117594 HSD11B1 11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1 hydroxysteroid 11-beta dehydrogenase 1 protein-coding 1025-14 chr4 97139218 97139739 + 3 NA Intergenic HERVH-int|LTR|ERV1 -227448 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 485-126 chr2 33631276 33631653 + 3 NA Intergenic L1MB3|LINE|L1 -32102 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 692-96 chr7 128743415 128743720 + 3 NA intron (NR_074086, intron 1 of 4) AluJb|SINE|Alu 4208 NM_001130674 813 Hs.7753 NM_001219 ENSG00000128595 CALU - calumenin protein-coding 556-221 chr8 79823245 79823520 + 3 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 48355 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 542-182 chr6 1060677 1060926 + 3 NA intron (NR_027116, intron 1 of 3) L1MC4|LINE|L1 40531 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 412-80 chr13 61289157 61289446 + 3 NA Intergenic Intergenic -89421 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 454-225 chr4 30451420 30451709 + 3 NA Intergenic L2a|LINE|L2 -268805 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 725-4 chr1 114845231 114845624 + 3 NA Intergenic Intergenic -9376 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 308-395 chr5 114960632 114960797 + 3 NA Intergenic L1MC4a|LINE|L1 -187301 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 631-5 chr1 67086552 67086913 + 3 NA Intergenic Intergenic -32584 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 162-47 chr18 56423420 56423485 + 3 NA Intergenic Intergenic 215140 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 467-45 chr11 37012566 37012871 + 3 NA Intergenic L1MEg|LINE|L1 -414439 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 523-258 chr7 143222807 143223031 + 3 NA exon (NM_176882, exon 1 of 1) exon (NM_176882, exon 1 of 1) 882 NM_176882 259286 Hs.352241 NM_176882 ENSG00000221937 TAS2R40 GPR60|T2R40|T2R58 taste 2 receptor member 40 protein-coding 749-49 chr2 28157229 28157630 + 3 NA intron (NR_120504, intron 1 of 2) intron (NR_120504, intron 1 of 2) 49532 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 608-145 chr7 46471428 46471774 + 3 NA Intergenic LTR9D|LTR|ERV1 225521 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 372-239 chr2 83356330 83356470 + 3 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat -166414 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 844-66 chr8 64435148 64435636 + 3 NA Intergenic Intergenic 56243 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 875 chr1 215812338 215812916 + 3 NA intron (NM_206933, intron 49 of 71) intron (NM_206933, intron 49 of 71) 245323 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 356-379 chr5 6662515 6662742 + 3 NA intron (NM_001047, intron 3 of 4) intron (NM_001047, intron 3 of 4) 29188 NM_001324323 6715 Hs.552 NM_001047 ENSG00000145545 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 protein-coding 501-62 chr13 103935828 103936059 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 510743 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 416-354 chr9 98366837 98367084 + 3 NA intron (NM_005458, intron 12 of 18) intron (NM_005458, intron 12 of 18) -111311 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 731-12 chr10 44364116 44364546 + 3 NA Intergenic L3|LINE|CR1 20766 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 537-65 chr14 47599339 47599612 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 75479 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 447-15 chr1 210219045 210219305 + 3 NA Intergenic Intergenic -13621 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 514-214 chr4 148488035 148488266 + 3 NA Intergenic Intergenic -43452 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 329-531 chr7 27544669 27544821 + 3 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -71229 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 636-75 chr2 77361365 77361728 + 3 NA intron (NR_146416, intron 1 of 1) L2|LINE|L2 160830 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 964-27 chr6 9331272 9331913 + 3 NA Intergenic MamRep1527|LTR|LTR 679383 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 536-167 chr3 116438283 116438541 + 3 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 7075 NM_002338 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 328-601 chr9 27391894 27392038 + 3 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -94816 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 457-218 chr6 94176331 94176613 + 3 NA Intergenic Intergenic 458169 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 793-56 chr9 84421653 84422124 + 3 NA Intergenic LTR8B|LTR|ERV1 -53161 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 825-12 chr16 55520041 55520367 + 3 NA intron (NM_017839, intron 1 of 13) L1ME2|LINE|L1 11132 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 879-23 chr4 95076436 95076878 + 3 NA intron (NM_001256793, intron 1 of 10) intron (NM_001256793, intron 1 of 10) -14834 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 624-17 chr10 83711110 83711422 + 3 NA Intergenic Intergenic -34177 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 920-9 chr14 54328201 54328937 + 3 NA Intergenic Intergenic -68299 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 410-130 chr2 23448964 23449185 + 3 NA intron (NM_052920, intron 1 of 13) MIRb|SINE|MIR 63895 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 307-372 chr5 11940616 11940787 + 3 NA Intergenic L1MB1|LINE|L1 -36255 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 481-187 chr22 47515376 47515694 + 3 NA Intergenic Intergenic -28424 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 488-30 chr10 85318038 85318399 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 114554 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 352-444 chr6 37595966 37596184 + 3 NA Intergenic L1ME4b|LINE|L1 -40653 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 473-300 chr9 105063569 105063812 + 3 NA Intergenic Intergenic -135535 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 667-114 chr8 87980462 87980825 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -106628 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 899-7 chr12 118842161 118842734 + 3 NA Intergenic L2b|LINE|L2 -8911 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 842 chr1 49289649 49290195 + 3 NA intron (NR_136623, intron 2 of 12) L1ME3|LINE|L1 32511 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 591-108 chr4 41044755 41045127 + 3 NA intron (NM_001330658, intron 3 of 15) HAL1M8|LINE|L1 169601 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 462-158 chr20 42325024 42325259 + 3 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -360342 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 604-146 chr7 385906 386219 + 3 NA Intergenic AluSq2|SINE|Alu 6637 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 281-137 chr15 91545935 91546084 + 3 NA Intergenic Intergenic 82670 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 967-20 chr5 113633262 113633697 + 3 NA Intergenic Intergenic 119785 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 408-155 chr2 54022523 54022702 + 3 NA intron (NM_001320587, intron 2 of 5) AluJr|SINE|Alu 51499 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 777-27 chr15 79658503 79658802 + 3 NA Intergenic MER34|LTR|ERV1 226136 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 795-56 chr8 63835176 63835525 + 3 NA Intergenic Intergenic 65920 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 455-153 chr21 30454150 30454441 + 3 NA Intergenic Intergenic 14016 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 774-62 chr3 190722817 190723127 + 3 NA Intergenic Intergenic 139722 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 518-2 chr1 47669709 47669915 + 3 NA Intergenic L1ME3A|LINE|L1 -232495 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 595-148 chr7 4507284 4507633 + 3 NA Intergenic Intergenic -174837 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 1218-4 chr20 55637445 55638313 + 3 NA Intergenic Intergenic -210682 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 452-175 chr3 157539692 157540018 + 3 NA Intergenic Intergenic -3457 NR_024016 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 417-242 chr6 75469616 75469841 + 3 NA intron (NR_110608, intron 1 of 1) L1ME3G|LINE|L1 24072 NM_001289987 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 315-405 chr5 169877575 169877837 + 3 NA intron (NM_001129891, intron 3 of 3) intron (NM_001129891, intron 3 of 3) 102789 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 233-224 chr3 6993509 6993644 + 3 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -99559 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 484-223 chr5 129154230 129154597 + 3 NA Intergenic L1ME2|LINE|L1 56725 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 421-10 chr1 81875215 81875494 + 3 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 72901 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 703-63 chr4 20657848 20658341 + 3 NA Intergenic MER3|DNA|hAT-Charlie -38188 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 829-45 chr8 77338618 77339093 + 3 NA Intergenic L1M5|LINE|L1 -111842 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 484-146 chr2 187393540 187393809 + 3 NA intron (NM_005795, intron 1 of 14) intron (NM_005795, intron 1 of 14) 54578 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 300-418 chr7 32360675 32360791 + 3 NA intron (NM_001322059, intron 1 of 17) MER45A|DNA|hAT-Tip100 -61405 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 620-75 chr20 42804279 42804684 + 3 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) 118998 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 510-133 chr2 21961015 21961353 + 3 NA Intergenic L1PB2|LINE|L1 -250532 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 543-225 chr7 32577389 32577719 + 3 NA intron (NM_015060, intron 13 of 15) intron (NM_015060, intron 13 of 15) 82065 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 2606 chr11 50398682 50400053 + 3 NA Intergenic ALR/Alpha|Satellite|centr -9780 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 591-107 chr4 32319316 32319568 + 3 NA Intergenic MER52A|LTR|ERV1 -31596 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 463-117 chr18 71364091 71364327 + 3 NA Intergenic Intergenic 214747 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 450-205 chr3 122580789 122580991 + 3 NA intron (NM_001113523, intron 1 of 11) Tigger3a|DNA|TcMar-Tigger 3240 NM_001308320 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 507-273 chr9 37427502 37427776 + 3 NA intron (NM_012203, intron 4 of 8) AluJb|SINE|Alu 4943 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 382-76 chr12 45583422 45583601 + 3 NA Intergenic Intergenic 144410 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 533-63 chr15 79915793 79915982 + 3 NA intron (NR_037653, intron 1 of 2) LTR10E|LTR|ERV1 -6884 NR_028330 283687 Hs.722219 NM_175898 ST20-AS1 C15orf37 ST20 antisense RNA 1 ncRNA 515-197 chr5 7440047 7440283 + 3 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 44027 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 252-200 chr2 98848110 98848221 + 3 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) -76267 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 714-29 chr16 82985066 82985369 + 3 NA intron (NR_110937, intron 1 of 2) intron (NR_110937, intron 1 of 2) 5081 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 578-73 chr17_GL000205v2_random 14851 15154 + 3 NA Intergenic CER|Satellite|Satellite 42964 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 396-181 chr2 197789707 197790041 + 3 NA Intergenic L2|LINE|L2 -3562 NM_001284358 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 417-315 chrX 85743180 85743457 + 3 NA Intergenic L1PA15|LINE|L1 -92462 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 786-40 chr3 24221591 24222056 + 3 NA intron (NM_001354714, intron 2 of 8) intron (NM_001354714, intron 2 of 8) 70499 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 445-269 chr8 64101974 64102182 + 3 NA intron (NR_125826, intron 4 of 4) MLT1D|LTR|ERVL-MaLR 266480 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 687-30 chr12 43436971 43437459 + 3 NA intron (NM_025003, intron 18 of 38) L1MEd|LINE|L1 114988 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 252-190 chr2 65847597 65847705 + 3 NA Intergenic Intergenic -415052 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 493-215 chr3 170212342 170212557 + 3 NA Intergenic L1MB7|LINE|L1 -9975 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 885-17 chr5 2245905 2246431 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 66033 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 512-189 chr4 54899507 54899786 + 3 NA Intergenic L2a|LINE|L2 225949 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 476-77 chr14 42149160 42149435 + 3 NA Intergenic L1MCa|LINE|L1 542441 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 459-241 chr5 107098741 107099001 + 3 NA Intergenic Intergenic -87857 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 493-5 chr1 49409926 49410176 + 3 NA intron (NR_046839, intron 3 of 3) intron (NR_046839, intron 3 of 3) 62034 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 328-196 chr16 68940758 68940914 + 3 NA intron (NM_024562, intron 14 of 17) MER101-int|LTR|ERV1 97305 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 401-205 chr3 68511009 68511206 + 3 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) 10470 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 364-477 chr9 125020218 125020353 + 3 NA intron (NM_173690, intron 8 of 18) Tigger19a|DNA|TcMar-Tigger -79202 NM_002077 2800 Hs.59504 NM_002077 ENSG00000136935 GOLGA1 golgin-97 golgin A1 protein-coding 523-137 chr2 123110131 123110424 + 3 NA Intergenic L1ME1|LINE|L1 -36796 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 638-44 chr15 43156120 43156366 + 3 NA intron (NM_024956, intron 9 of 13) MIRb|SINE|MIR 22657 NM_024956 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 547-40 chr11 111105916 111106170 + 3 NA Intergenic Intergenic -8725 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 414-2 chr1 37355197 37355418 + 3 NA Intergenic Intergenic 119136 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 800-27 chr16 77365530 77365966 + 3 NA intron (NM_199355, intron 4 of 22) MamRep38|DNA|hAT 69286 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 412-169 chr2 143421308 143421540 + 3 NA intron (NM_018460, intron 6 of 13) GA-rich|Low_complexity|Low_complexity 292005 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 835-54 chr8 88669597 88670022 + 3 NA Intergenic L1MC4|LINE|L1 -342326 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 454-325 chr8 130928143 130928373 + 3 NA intron (NM_001115, intron 5 of 17) AluJr4|SINE|Alu 112651 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 468-286 chr6 124379637 124379851 + 3 NA intron (NM_153355, intron 3 of 5) intron (NM_153355, intron 3 of 5) 96739 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 509-53 chr11 129535291 129535532 + 3 NA Intergenic L1MEd|LINE|L1 81858 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 774-5 chr10 16092483 16092944 + 3 NA Intergenic L1ME2|LINE|L1 -232180 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 428-16 chr1 196022973 196023136 + 3 NA Intergenic L2b|LINE|L2 65661 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 458-280 chrX 86190333 86190494 + 3 NA intron (NM_001139514, intron 1 of 11) intron (NM_001139514, intron 1 of 11) 41962 NM_053281 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 268-320 chr5 105971419 105971591 + 3 NA Intergenic (TTGTAA)n|Simple_repeat|Simple_repeat 872031 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 667-32 chr15 61428486 61428782 + 3 NA Intergenic L2c|LINE|L2 -199332 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 479-66 chr14 69943948 69944139 + 3 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -34090 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 354-227 chr2 146794543 146794753 + 3 NA Intergenic MIR3|SINE|MIR 207591 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 531-137 chr20 42376135 42376416 + 3 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -309208 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 547-92 chr2 5350399 5350743 + 3 NA Intergenic Intergenic 340547 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 721-18 chr14 86752378 86752856 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -153161 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 291-367 chr5 125134041 125134218 + 3 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 97298 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 390-367 chr7 157062104 157062271 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 51330 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 363-475 chr9 79437261 79437444 + 3 NA Intergenic Kanga1|DNA|TcMar-Tc2 -134421 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 516-163 chr22 47237322 47237605 + 3 NA Intergenic Intergenic -108108 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 1092-3 chr10 37452761 37453334 + 3 NA Intergenic L1M5|LINE|L1 143861 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 208-63 chr12 83627411 83627538 + 3 NA Intergenic MER47B|DNA|TcMar-Tigger 940319 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 418-303 chr9 27440553 27440836 + 3 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -83620 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 575-135 chr4 33614191 33614569 + 3 NA Intergenic Intergenic 425513 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 649-2 chr1 124961588 124962048 + 3 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 3442706 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 1176-10 chr5 40349973 40350685 + 3 NA Intergenic L1MA2|LINE|L1 298038 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 403-132 chr17 79967658 79967838 + 3 NA intron (NM_019020, intron 3 of 11) L1MB7|LINE|L1 -16895 NM_001271845 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 372-147 chr14 67016078 67016276 + 3 NA intron (NM_001024218, intron 8 of 21) Charlie4a|DNA|hAT-Charlie -173263 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 641-114 chr8 126353807 126354127 + 3 NA Intergenic L1PB1|LINE|L1 28472 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 439-171 chr22 28156461 28156674 + 3 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -235955 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 740-11 chr10 39159124 39159501 + 3 NA Intergenic ALR/Alpha|Satellite|centr 462716 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1146-10 chr3 85167419 85167998 + 3 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -105444 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 520-123 chr18 9503823 9504087 + 3 NA intron (NM_006788, intron 1 of 9) intron (NM_006788, intron 1 of 9) 28442 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 956-19 chr20 40531968 40532587 + 3 NA Intergenic MamGypLTR3a|LTR|Gypsy 156959 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 395-91 chr14 55748651 55748887 + 3 NA Intergenic Intergenic -17476 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 275-107 chr14 46515341 46515497 + 3 NA Intergenic LTR16D|LTR|ERVL 44060 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 558-196 chr7 25362149 25362380 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -133778 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 440-48 chr12 59588780 59588998 + 3 NA Intergenic Intergenic -7140 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 291-504 chrX 56063840 56064052 + 3 NA intron (NM_001324104, intron 2 of 6) L1M2|LINE|L1 155661 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 1233 chr10 64326732 64327482 + 3 NA Intergenic Intergenic -498421 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 288-141 chr16 13308896 13309067 + 3 NA Intergenic MER34|LTR|ERV1 407383 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 404-141 chr18 34062122 34062303 + 3 NA intron (NM_001353233, intron 5 of 11) L1PA12|LINE|L1 -13600 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 485-136 chr2 98887194 98887372 + 3 NA intron (NM_207362, intron 1 of 9) AluJr|SINE|Alu 48942 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 652-42 chr15 62918360 62918715 + 3 NA Intergenic L1MB7|LINE|L1 94580 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 454-148 chr2 51768312 51768497 + 3 NA intron (NR_135237, intron 6 of 10) MSTB1|LTR|ERVL-MaLR -602244 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 493-94 chr15 62359718 62359940 + 3 NA Intergenic L3|LINE|CR1 16800 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 388-87 chr12 110188456 110188635 + 3 NA intron (NR_144950, intron 12 of 18) L2a|LINE|L2 64188 NR_144951 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19 intraflagellar transport 81 protein-coding 384-411 chrX 5520467 5520649 + 3 NA Intergenic L1MD2|LINE|L1 -705800 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 531-177 chr4 59106892 59107181 + 3 NA Intergenic Intergenic 93463 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 354-208 chr2 52680033 52680258 + 3 NA Intergenic Intergenic 22470 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 577-192 chr8 87346506 87346804 + 3 NA intron (NM_173538, intron 8 of 10) intron (NM_173538, intron 8 of 10) 480240 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 657-56 chr2 170187957 170188361 + 3 NA intron (NM_001083615, intron 1 of 33) L1MA3|LINE|L1 10012 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 591-28 chr12 13539088 13539510 + 3 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -162554 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 808 chr1 34545741 34546228 + 3 NA Intergenic Intergenic 123710 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 580-85 chr2 124592455 124592798 + 3 NA intron (NM_130773, intron 11 of 23) L1MC5|LINE|L1 567339 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 273-307 chr3 175756256 175756412 + 3 NA intron (NM_207015, intron 13 of 13) L1PB4|LINE|L1 19999 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 398-293 chr6 56387553 56387718 + 3 NA intron (NM_001318752, intron 1 of 28) L1M1|LINE|L1 6493 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 805-28 chr3 64326215 64326624 + 3 NA Intergenic L1MB7|LINE|L1 -58246 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 513-23 chr10 31535564 31535848 + 3 NA Intergenic Intergenic -135951 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 511-192 chr4 46904256 46904546 + 3 NA intron (NM_130902, intron 1 of 2) L1MC5a|LINE|L1 4844 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 793-25 chr2 5012375 5012784 + 3 NA Intergenic Intergenic -356357 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 709-97 chr9 16969372 16969872 + 3 NA Intergenic Intergenic -98952 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 301-268 chr22 33185669 33185793 + 3 NA Intergenic L1MC1|LINE|L1 77202 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 531-252 chr8 134544895 134545196 + 3 NA intron (NM_020863, intron 11 of 15) L1ME3B|LINE|L1 -53026 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 897-18 chr19 52062850 52063402 + 3 NA intron (NM_001369829, intron 7 of 7) AluSc8|SINE|Alu -14288 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 637-28 chr12 47041929 47042303 + 3 NA Intergenic Intergenic -37487 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 461-38 chr10 88152471 88152707 + 3 NA Intergenic Intergenic 288964 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 346-305 chr3 23233766 23233954 + 3 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 30533 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 458 chr1 27270936 27271149 + 3 NA intron (NM_001276252, intron 3 of 15) L1MC5a|LINE|L1 36410 NM_001276252 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 478-283 chr8 43636681 43636859 + 3 NA Intergenic ALR/Alpha|Satellite|centr 344328 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 460-7 chr1 111562325 111562572 + 3 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) 1555 NM_001081976 57413 Hs.281342 NM_020683 ENSG00000121933 TMIGD3 AD026 transmembrane and immunoglobulin domain containing 3 protein-coding 499-122 chr2 80092883 80093137 + 3 NA intron (NM_001282598, intron 7 of 17) L1PA4|LINE|L1 211742 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 664-85 chr5 36481019 36481328 + 3 NA Intergenic L1MC5a|LINE|L1 -125182 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 746-79 chr8 74601518 74601883 + 3 NA intron (NR_033830, intron 1 of 5) intron (NR_033830, intron 1 of 5) 1834 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 815-26 chr2 75313720 75314187 + 3 NA Intergenic Intergenic -114433 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 532-175 chr3 164004864 164005085 + 3 NA Intergenic L1PA11|LINE|L1 166582 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 630-13 chr11 38828746 38829135 + 3 NA Intergenic L1PA17|LINE|L1 180082 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 555-152 chr4 131070601 131070937 + 3 NA Intergenic MER92-int|LTR|ERV1 -694069 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 276-94 chr11 126744573 126744762 + 3 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) 88581 NR_120533 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 339-291 chr2 187249409 187249604 + 3 NA Intergenic Intergenic 198746 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 499-245 chr7 62856307 62856722 + 3 NA Intergenic ALR/Alpha|Satellite|centr 447542 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1134-4 chr12 52762532 52763082 + 3 NA Intergenic L1ME4b|LINE|L1 14538 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 278-51 chr11 33462417 33462524 + 3 NA intron (NM_012194, intron 1 of 20) L4_B_Mam|LINE|RTE-X 86362 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 663-57 chr2 117590193 117590488 + 3 NA Intergenic L1PB1|LINE|L1 -224351 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 504-139 chr2 162310723 162311029 + 3 NA exon (NM_022168, exon 2 of 16) exon (NM_022168, exon 2 of 16) 7808 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 572-52 chr14 26498053 26498429 + 3 NA intron (NM_001366393, intron 2 of 4) AluY|SINE|Alu 55189 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 507-35 chr10 90709467 90709646 + 3 NA Intergenic Intergenic 148483 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 536-196 chr6 57157718 57158003 + 3 NA intron (NM_015555, intron 12 of 13) intron (NM_015555, intron 12 of 13) 14353 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 535-204 chr5 107156501 107156825 + 3 NA Intergenic L1ME4a|LINE|L1 -145649 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 551-77 chr18 75940826 75941132 + 3 NA Intergenic Intergenic -182019 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 521-183 chr4 111082807 111083126 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -222319 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 831-40 chr5 98675571 98676030 + 3 NA Intergenic L1MA2|LINE|L1 -92832 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 810-59 chr9 92041487 92041925 + 3 NA intron (NM_001368273, intron 13 of 15) L1M5|LINE|L1 73707 NM_006415 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 878-8 chr11 36320715 36321130 + 3 NA intron (NM_001160167, intron 1 of 8) MIRb|SINE|MIR 24634 NM_001160167 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 1599 chr1 159460073 159460982 + 3 NA Intergenic L1MDa|LINE|L1 20805 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 326-540 chr8 99080673 99080882 + 3 NA intron (NR_047582, intron 4 of 8) L1MEi|LINE|L1 67511 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 314-629 chrX 128461899 128462070 + 3 NA Intergenic Intergenic -409581 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 538-217 chr6 166149302 166149588 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR 18406 NM_001366285 6862 Hs.389457 NM_003181 ENSG00000164458 TBXT SAVA|T|TFT T-box transcription factor T protein-coding 340-207 chr17 73019973 73020160 + 3 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 72622 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 420-105 chr18 1926458 1926643 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR -566921 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 542-95 chr2 62322757 62323071 + 3 NA Intergenic LTR56|LTR|ERV1 107393 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 473-69 chr13 41342469 41342816 + 3 NA intron (NM_001110798, intron 9 of 10) intron (NM_001110798, intron 9 of 10) -30604 NM_001354074 9617 Hs.382176 NM_004294 ENSG00000120662 MTRF1 MRF1|MTTRF1|RF1 mitochondrial translation release factor 1 protein-coding 519-92 chr2 5344942 5345254 + 3 NA Intergenic Intergenic 346020 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 413-155 chr2 168944578 168944833 + 3 NA exon (NM_003742, exon 21 of 28) exon (NM_003742, exon 21 of 28) 43414 NM_021176 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 711-36 chr2 213681566 213681919 + 3 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -76325 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 1256-12 chr9 27671555 27672223 + 3 NA Intergenic MIRb|SINE|MIR -98023 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 318-200 chr16 75152020 75152204 + 3 NA intron (NM_001318475, intron 1 of 3) L1MEf|LINE|L1 3061 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 998-10 chr18 70443053 70443690 + 3 NA Intergenic LTR10B2|LTR|ERV1 -58780 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 509-252 chr8 86024847 86025109 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 44690 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 480-30 chr10 51113224 51113480 + 3 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 38865 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 513-143 chr2 131025406 131025712 + 3 NA intron (NM_001367493, intron 4 of 13) intron (NM_001367493, intron 4 of 13) 67603 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 557-72 chr17 72197855 72198180 + 3 NA Intergenic Intergenic 76997 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 356-479 chr8 88619751 88620002 + 3 NA Intergenic L1MB3|LINE|L1 -292393 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 501-164 chr3 60490504 60490821 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 127208 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 322-496 chr7 79064577 79064776 + 3 NA intron (NM_001301128, intron 1 of 20) MLT1J|LTR|ERVL-MaLR 55688 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 383-348 chr7 8695711 8695875 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 262184 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 407-96 chr16 7673937 7674219 + 3 NA intron (NM_145893, intron 10 of 13) intron (NM_145893, intron 10 of 13) 341233 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 1331 chr12 34586589 34587514 + 3 NA Intergenic ALR/Alpha|Satellite|centr 564555 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 395-250 chr4 66218959 66219108 + 3 NA Intergenic Intergenic -57791 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 462-109 chr17 62004396 62004638 + 3 NA intron (NM_005121, intron 9 of 29) L2a|LINE|L2 60761 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 292-85 chr11 114247848 114247969 + 3 NA intron (NM_006006, intron 6 of 6) AluSq|SINE|Alu -47905 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 900-29 chr3 157925875 157926346 + 3 NA Intergenic L1PREC2|LINE|L1 180053 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 413-246 chr5 124005625 124005832 + 3 NA Intergenic Intergenic 432792 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 397-76 chr13 100706225 100706407 + 3 NA Intergenic (CTTCTT)n|Simple_repeat|Simple_repeat -2009 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 578-23 chr10 22605792 22606305 + 3 NA intron (NM_005028, intron 3 of 9) intron (NM_005028, intron 3 of 9) 108060 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 584-34 chr12 13698257 13698551 + 3 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 281952 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 417-211 chr5 16114819 16114990 + 3 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 64887 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 495-76 chr16 59954007 59954199 + 3 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 98750 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 674-35 chr16 60213960 60214227 + 3 NA Intergenic Intergenic 145700 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 877-24 chr5 20361360 20361908 + 3 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 56083 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 391-59 chr11 50565398 50565551 + 3 NA Intergenic ALR/Alpha|Satellite|centr 156327 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 425-82 chr14 59800360 59800521 + 3 NA intron (NM_021136, intron 1 of 8) AluYj4|SINE|Alu 70336 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 402-328 chr7 114134864 114135050 + 3 NA intron (NR_033766, intron 1 of 19) L1ME4c|LINE|L1 48630 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 526-270 chrX 54867019 54867252 + 3 NA Intergenic L1MA8|LINE|L1 52765 NR_002953 677799 Hs.679783 NR_002953 ENSG00000221716 SNORA11 SNORA11A|U107 small nucleolar RNA, H/ACA box 11 snoRNA 594-112 chr5 40917349 40917643 + 3 NA intron (NM_000587, intron 1 of 17) L1MA8|LINE|L1 7999 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 424-127 chr2 42417954 42418183 + 3 NA Intergenic L1MB4|LINE|L1 -49111 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 441-33 chr10 112874249 112874423 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR 50840 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 907 chr1 172785937 172786438 + 3 NA Intergenic L1MA2|LINE|L1 127084 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 550-40 chr10 111833128 111833496 + 3 NA Intergenic Intergenic 350453 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 982-28 chr8 50225682 50226138 + 3 NA intron (NR_135797, intron 2 of 20) Zaphod|DNA|hAT-Tip100 61779 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 521-224 chr6 138038207 138038400 + 3 NA Intergenic Charlie25|DNA|hAT-Charlie 69116 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 535-188 chr4 116882442 116882652 + 3 NA Intergenic L1M5|LINE|L1 203029 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 471-289 chrUn_GL000216v2 10926 11128 + 3 NA NA (CATTC)n|Satellite|Satellite NA NA 354-361 chr5 13194316 13194523 + 3 NA Intergenic Intergenic -161533 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 545-132 chr20 45626622 45626930 + 3 NA intron (NM_147198, intron 1 of 4) L1MA5A|LINE|L1 -2963 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 462-165 chr22 34658214 34658408 + 3 NA Intergenic Tigger3|DNA|TcMar-Tigger 339605 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 229-91 chr12 50688180 50688276 + 3 NA intron (NM_173602, intron 12 of 37) FLAM_C|SINE|Alu -75873 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 486-222 chr4 52086113 52086314 + 3 NA intron (NM_001346103, intron 7 of 8) MamTip3|DNA|hAT-Tip100 34909 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 514-264 chr7 21213835 21214153 + 3 NA Intergenic Intergenic -214089 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 393-169 chr2 129407194 129407356 + 3 NA Intergenic L1M4|LINE|L1 -133384 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 477-250 chr7 4019745 4020007 + 3 NA intron (NM_152744, intron 17 of 44) intron (NM_152744, intron 17 of 44) -109809 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 481-43 chr10 107584229 107584547 + 3 NA Intergenic L1MA9|LINE|L1 -419682 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 555-99 chr2 114844582 114844816 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -11151 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 360-14 chr1 164105382 164105602 + 3 NA Intergenic L1ME4a|LINE|L1 -453868 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 461-11 chr1 112147290 112147660 + 3 NA Intergenic Intergenic 156939 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 627-85 chr5 10928914 10929273 + 3 NA Intergenic L1MEg|LINE|L1 -167859 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 1485-2 chr19 36755676 36756479 + 3 NA intron (NM_001267779, intron 3 of 3) AluSc|SINE|Alu 16730 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 385-148 chr18 64502812 64503007 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -242854 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 749-13 chr10 8167997 8168580 + 3 NA Intergenic L1MEd|LINE|L1 100017 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 739-66 chr7 53232507 53232859 + 3 NA Intergenic Intergenic 197050 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 409-260 chr6 25899745 25899912 + 3 NA Intergenic Intergenic -25585 NM_006632 10786 Hs.327179 NM_006632 ENSG00000124564 SLC17A3 GOUT4|NPT4|UAQTL4 solute carrier family 17 member 3 protein-coding 590-7 chr1 76517821 76518131 + 3 NA intron (NM_001349109, intron 3 of 3) L1MEd|LINE|L1 261291 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 283-293 chr3 60645205 60645387 + 3 NA intron (NM_001320900, intron 5 of 9) LTR78|LTR|ERV1 -27426 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 748-2 chr1 60050889 60051415 + 3 NA intron (NM_152377, intron 3 of 11) L2c|LINE|L2 22618 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 494-37 chr11 43041013 43041196 + 3 NA Intergenic THE1A-int|LTR|ERVL-MaLR 228265 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 479-122 chr20 7098678 7098994 + 3 NA Intergenic L1MA1|LINE|L1 155366 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 898-42 chrX 50279764 50280266 + 3 NA intron (NM_033031, intron 1 of 12) (AT)n|Simple_repeat|Simple_repeat -4527 NM_033670 85417 Hs.130310 NM_033031 ENSG00000147082 CCNB3 - cyclin B3 protein-coding 337-415 chr4 160270144 160270342 + 3 NA Intergenic Intergenic -492459 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 799-36 chr3 41534651 41535081 + 3 NA intron (NR_136342, intron 30 of 34) intron (NR_136342, intron 30 of 34) 335361 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 462-71 chr12 130624066 130624406 + 3 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 4220 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 1767-2 chr20 15807681 15808761 + 3 NA intron (NM_001351663, intron 8 of 17) LTR2|LTR|ERV1 115093 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 463-85 chr13 108624403 108624654 + 3 NA intron (NM_015011, intron 1 of 34) intron (NM_015011, intron 1 of 34) -5083 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 232-371 chr8 83246562 83246671 + 3 NA Intergenic Intergenic -157142 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 434-300 chr8 132568596 132568828 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -7233 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 565-179 chr8 61329521 61329721 + 3 NA intron (NM_173519, intron 2 of 5) L1MA4|LINE|L1 41651 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 575-25 chr10 131485043 131485405 + 3 NA Intergenic Charlie21a|DNA|hAT-Charlie -173503 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 739-69 chr8 112175041 112175561 + 3 NA Intergenic Intergenic -468192 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 522-221 chr6 54332955 54333164 + 3 NA intron (NM_014464, intron 4 of 10) L1PA7|LINE|L1 24618 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 269-292 chr4 111713696 111713830 + 3 NA Intergenic MER112|DNA|hAT-Charlie -431691 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 445-272 chr8 92987238 92987425 + 3 NA Intergenic Intergenic -21187 NM_001171799 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 370-189 chr18 4248578 4248840 + 3 NA intron (NM_001242761, intron 1 of 11) L2a|LINE|L2 -15893 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 305-18 chr1 88227853 88228107 + 3 NA Intergenic Intergenic -456164 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 1047-18 chr5 38168959 38169379 + 3 NA intron (NR_147009, intron 2 of 2) L2a|LINE|L2 20689 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 350-42 chr10 43120534 43120676 + 3 NA intron (NM_020630, intron 15 of 18) intron (NM_020630, intron 15 of 18) 15873 NM_001355216 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 386-225 chr22 49293519 49293764 + 3 NA Intergenic L1M2|LINE|L1 249825 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 1073-11 chr3 112147253 112148043 + 3 NA intron (NM_001320531, intron 27 of 27).2 L1PA16|LINE|L1 14225 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 1077-12 chr4 64225807 64226219 + 3 NA Intergenic Intergenic 183437 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 423-95 chr17 8929311 8929497 + 3 NA intron (NM_001142633, intron 1 of 18) L1MD1|LINE|L1 -16887 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 470-26 chr10 66614609 66614904 + 3 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -311280 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 453-265 chr7 112804721 112804969 + 3 NA Intergenic MIR|SINE|MIR -14422 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 386-292 chr5 67344116 67344320 + 3 NA Intergenic L1M2|LINE|L1 -147419 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 821-60 chrX 150179006 150179367 + 3 NA Intergenic L1MEc|LINE|L1 -48818 NR_031748 100313839 NR_031748 ENSG00000252454 MIR2114 - microRNA 2114 ncRNA 569-153 chr6 54925708 54926068 + 3 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 79117 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 466-76 chr14 60606427 60606678 + 3 NA Intergenic L1MC5a|LINE|L1 -32664 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 653-12 chr1 231189922 231190262 + 3 NA intron (NM_001300889, intron 3 of 11) MLT1D|LTR|ERVL-MaLR -2465 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 360-357 chr5 39537407 39537570 + 3 NA Intergenic Intergenic 17057 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 347-433 chr6 54705831 54706018 + 3 NA Intergenic Intergenic -140847 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 589-47 chr18 1234945 1235363 + 3 NA Intergenic L1PA13|LINE|L1 124475 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 665-63 chr4 31594514 31594972 + 3 NA Intergenic L2a|LINE|L2 88199 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 287-387 chr7 99871543 99871671 + 3 NA Intergenic L1MD2|LINE|L1 5426 NM_001005276 81392 Hs.647523 NM_001005276 ENSG00000244623 OR2AE1 OR2AE2 olfactory receptor family 2 subfamily AE member 1 protein-coding 428-164 chr21 31812763 31813030 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -60124 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 753-29 chr17 67050271 67050709 + 3 NA intron (NM_000727, intron 1 of 3) intron (NM_000727, intron 1 of 3) 5936 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 450-253 chr5 157879630 157879857 + 3 NA Intergenic LTR12C|LTR|ERV1 -20598 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 317-328 chr3 191647204 191647437 + 3 NA Intergenic Intergenic 186157 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 549-200 chr7 94199719 94199962 + 3 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 192352 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 447-285 chr8 142365866 142366175 + 3 NA intron (NM_001366903, intron 1 of 9) L1MC4a|LINE|L1 37162 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 644-74 chr5 8460823 8461212 + 3 NA promoter-TSS (NR_039663) promoter-TSS (NR_039663) 92 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 480-176 chr20 58486619 58486827 + 3 NA intron (NR_130908, intron 1 of 1) L1ME3F|LINE|L1 28215 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 825-41 chr5 7027581 7027908 + 3 NA Intergenic Intergenic -199823 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 754-61 chr4 162208798 162209090 + 3 NA Intergenic L1MB7|LINE|L1 -44910 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 651-26 chr11 103971361 103971690 + 3 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -65115 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 747-19 chr14 38475620 38476077 + 3 NA Intergenic L1ME1|LINE|L1 -219755 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 988-45 chrX 96353418 96353815 + 3 NA Intergenic L1MB4|LINE|L1 -15714 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 578-32 chr10 92165468 92165679 + 3 NA intron (NM_001178137, intron 4 of 9) Tigger1|DNA|TcMar-Tigger 77706 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 445-184 chr3 179854855 179855046 + 3 NA intron (NM_001349408, intron 8 of 14) L2a|LINE|L2 -43244 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 309-97 chr12 15927666 15927823 + 3 NA intron (NM_015954, intron 1 of 8) intron (NM_015954, intron 1 of 8) 16412 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 669-8 chr1 197462387 197462790 + 3 NA intron (NR_047564, intron 11 of 11) intron (NR_047564, intron 11 of 11) 194336 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 450-58 chr11 133113326 133113560 + 3 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -169675 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 480-24 chr10 25534829 25535158 + 3 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -116719 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 361-164 chr17 6871506 6871746 + 3 NA intron (NR_002710, intron 2 of 13) L1MA2|LINE|L1 18050 NR_002710 245 Hs.378695 NR_002710 ENSG00000262943 ALOX12P2 ALOX12E arachidonate 12-lipoxygenase pseudogene 2 pseudo 408-239 chr4 67212862 67213141 + 3 NA Intergenic Intergenic 208999 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 377-311 chr5 23204813 23204973 + 3 NA Intergenic Intergenic -302716 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 586-122 chr5 64382143 64382477 + 3 NA Intergenic Intergenic -123705 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 517-276 chr8 126142151 126142513 + 3 NA Intergenic HAL1|LINE|L1 -183163 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 298-134 chr15 25034085 25034298 + 3 NA non-coding (NR_146168, exon 1 of 1) non-coding (NR_146168, exon 1 of 1) 2318 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 427-46 chr12 45444926 45445165 + 3 NA Intergenic Intergenic 152355 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 520-118 chr17 68553866 68554133 + 3 NA intron (NM_017565, intron 3 of 10) (AT)n|Simple_repeat|Simple_repeat 4428 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 472-32 chr10 43533894 43534086 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 34469 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 330-153 chr14 48849461 48849616 + 3 NA Intergenic Intergenic 736842 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 703-89 chr7 89805347 89805820 + 3 NA Intergenic L1PBa|LINE|L1 -313817 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 502-73 chr13 20307853 20308076 + 3 NA Intergenic Intergenic -75569 NM_001110221 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 509-48 chr11 112436773 112436973 + 3 NA Intergenic L1MC2|LINE|L1 -45359 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 429-202 chr3 158891823 158892057 + 3 NA Intergenic Intergenic 89886 NR_110328 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 693-54 chr2 50038128 50038527 + 3 NA intron (NM_001330093, intron 21 of 22) MLT1F2|LTR|ERVL-MaLR -64124 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 567-39 chr11 104284259 104284474 + 3 NA Intergenic L1ME1|LINE|L1 -120219 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 488-78 chr14 51361674 51361961 + 3 NA intron (NR_038358, intron 4 of 4) intron (NR_038358, intron 4 of 4) 28424 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 456-348 chr9 128073921 128074155 + 3 NA intron (NM_001006641, intron 1 of 9) intron (NM_001006641, intron 1 of 9) 5838 NM_001330988 114789 Hs.5476 NM_052901 ENSG00000148339 SLC25A25 MCSC|PCSCL|SCAMC-2 solute carrier family 25 member 25 protein-coding 513-217 chr5 10891057 10891336 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -129962 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 526-130 chr2 105993735 105994072 + 3 NA Intergenic HERVK14C-int|LTR|ERVK -71785 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 412-159 chr2 76165899 76166147 + 3 NA Intergenic L1ME3A|LINE|L1 -455108 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 695-106 chr8 133166508 133166929 + 3 NA Intergenic Intergenic -24321 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 337-390 chr4 43101451 43101654 + 3 NA Intergenic Intergenic 208286 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 503-22 chr10 16393898 16394228 + 3 NA Intergenic Intergenic -42880 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 499-148 chr20 43890525 43890705 + 3 NA Intergenic L1MB7|LINE|L1 -4103 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 628-63 chr19 44323393 44323691 + 3 NA Intergenic L1MCc|LINE|L1 -18517 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 830-60 chrX 75484424 75484837 + 3 NA intron (NM_001146256, intron 1 of 10) L1ME1|LINE|L1 38407 NM_001146257 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 586-75 chr2 82160952 82161286 + 3 NA Intergenic MIR|SINE|MIR -694173 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 511-257 chr8 79992503 79992732 + 3 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 37642 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 818-60 chr7 132198119 132198433 + 3 NA intron (NM_020911, intron 13 of 31) intron (NM_020911, intron 13 of 31) -62585 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 973-22 chr4 34191864 34192506 + 3 NA intron (NR_147184, intron 2 of 3) MER70B|LTR|ERVL 77562 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 731-48 chr3 176348623 176349058 + 3 NA Intergenic L1ME3A|LINE|L1 104289 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 750-77 chr9 93891646 93892021 + 3 NA Intergenic L2|LINE|L2 63522 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 652-65 chr2 62823448 62823985 + 3 NA intron (NM_001142615, intron 5 of 22) intron (NM_001142615, intron 5 of 22) 116819 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 446-319 chr8 137975491 137975723 + 3 NA intron (NR_161374, intron 2 of 7) L1MEf|LINE|L1 107938 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 333-540 chr7 62837436 62837608 + 3 NA Intergenic ALR/Alpha|Satellite|centr 466534 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 511-26 chr10 93269701 93269901 + 3 NA Intergenic Intergenic 195908 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 416-106 chr13 68848339 68848497 + 3 NA Intergenic Intergenic 36907 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 406-194 chr3 117665813 117666074 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 24982 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 327-366 chr4 73804504 73804720 + 3 NA Intergenic L1PA15|LINE|L1 -32066 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 539-152 chr3 189372718 189373003 + 3 NA Intergenic Intergenic -132266 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 485-239 chr6 6238629 6238890 + 3 NA intron (NM_000129, intron 6 of 14) L1ME2|LINE|L1 -69324 NR_107007 102466866 NR_107007 ENSG00000263572 MIR7853 hsa-mir-7853 microRNA 7853 ncRNA 680-7 chr1 76389542 76389815 + 3 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 314932 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 638-47 chr15 81465529 81465773 + 3 NA Intergenic L1M2|LINE|L1 -91438 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 491-228 chr6 93825124 93825363 + 3 NA Intergenic L1MEf|LINE|L1 106940 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 328-415 chr4 106790195 106790394 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 246019 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 403-184 chr21 45709982 45710213 + 3 NA intron (NM_001348238, intron 2 of 16) L1MC3|LINE|L1 -37917 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 433-90 chr15 46185146 46185477 + 3 NA Intergenic L2b|LINE|L2 480116 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 331-433 chr5 117765502 117765671 + 3 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 35225 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 618-114 chr7 17697385 17697808 + 3 NA Intergenic MamTip1|DNA|hAT-Tip100 -138687 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 824-25 chr2 210993353 210993758 + 3 NA Intergenic L1MEc|LINE|L1 375984 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 168-57 chr2 82441723 82441820 + 3 NA Intergenic Intergenic -415032 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 227-256 chr4 66073104 66073232 + 3 NA Intergenic L1PA15|LINE|L1 -203656 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 255-10 chr1 143197571 143197759 + 3 NA Intergenic Intergenic 224927 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 542-80 chr18 1212683 1212948 + 3 NA Intergenic L1MA5A|LINE|L1 146814 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 370-187 chr17 80231425 80231659 + 3 NA intron (NM_001166348, intron 6 of 16) L1MEc|LINE|L1 11115 NM_001166349 284129 Hs.4866 NM_173626 ENSG00000181045 SLC26A11 - solute carrier family 26 member 11 protein-coding 533-175 chr5 35639490 35639736 + 3 NA intron (NM_144722, intron 2 of 9) intron (NM_144722, intron 2 of 9) 21750 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 780-19 chr14 76681547 76681918 + 3 NA Intergenic L1ME3F|LINE|L1 -79736 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 471-149 chr20 34403170 34403436 + 3 NA intron (NM_001257138, intron 3 of 23) intron (NM_001257138, intron 3 of 23) 40030 NM_031483 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 673-57 chr2 80414539 80414880 + 3 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 101330 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 469-125 chr2 36717552 36717795 + 3 NA intron (NM_001177969, intron 2 of 14) intron (NM_001177969, intron 2 of 14) 20966 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 562-218 chr8 91825115 91825317 + 3 NA Intergenic Intergenic 192464 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 641-49 chr17 79466582 79467028 + 3 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 49343 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 309-471 chr6 49159748 49159950 + 3 NA Intergenic Intergenic 303404 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 663-18 chr11 43068032 43068412 + 3 NA Intergenic Intergenic 201147 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 387-2 chr1 29376567 29376721 + 3 NA Intergenic L1MA4|LINE|L1 -26530 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 402-182 chr2 234643173 234643395 + 3 NA Intergenic MamRep1151|LTR?|LTR? -39384 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 714-74 chr8 104846869 104847392 + 3 NA Intergenic L1PREC2|LINE|L1 -258106 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 403-181 chr21 27427847 27428058 + 3 NA Intergenic Intergenic -294427 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 537-6 chr1 73451796 73452088 + 3 NA Intergenic Intergenic 145772 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 358-2 chr1 5355901 5356089 + 3 NA Intergenic L1MD3|LINE|L1 506746 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 348-330 chr3 165951867 165952120 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -114570 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 622-118 chr6 102469608 102469836 + 3 NA Intergenic L1MC1|LINE|L1 1070737 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 337-77 chr11 22616653 22616778 + 3 NA Intergenic L1MA1|LINE|L1 9126 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 405-119 chr18 46799780 46800068 + 3 NA Intergenic L1MB8|LINE|L1 -42871 NM_001307986 29906 Hs.465025 NM_013305 ENSG00000101638 ST8SIA5 SIAT8-E|SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 522-49 chr11 80180441 80180788 + 3 NA Intergenic L1PA13|LINE|L1 582189 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 318-224 chr18 72077015 72077153 + 3 NA Intergenic Intergenic -294858 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 952-30 chr9 10563156 10563614 + 3 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 49617 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 544-175 chr5 37079305 37079497 + 3 NA Intergenic Intergenic -169645 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 794-31 chr3 113833588 113834039 + 3 NA Intergenic L1M4|LINE|L1 -4975 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 193-148 chr4 21451118 21451238 + 3 NA intron (NM_147182, intron 2 of 8) MamGypsy2-I|LTR|Gypsy 13580 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 375-66 chr10 130680868 130681066 + 3 NA Intergenic Intergenic 281701 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 1038-4 chr13 47503388 47503875 + 3 NA Intergenic Intergenic 428991 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 722-64 chr6 35663467 35663800 + 3 NA intron (NM_001145775, intron 2 of 11) L2a|LINE|L2 1156 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 550-161 chr4 53706651 53707088 + 3 NA intron (NR_125918, intron 1 of 2) intron (NR_125918, intron 1 of 2) 10968 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 659-50 chr19 52088481 52088905 + 3 NA intron (NM_001369830, intron 1 of 2) Tigger2|DNA|TcMar-Tigger 5578 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 546-169 chr4 58780735 58781012 + 3 NA Intergenic Intergenic -203409 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 412-34 chr10 77057929 77058180 + 3 NA intron (NM_001271519, intron 14 of 28) L1ME1|LINE|L1 -82777 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 370-468 chr9 2443734 2443925 + 3 NA Intergenic L1PA10|LINE|L1 -177958 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 540-6 chr1 64973954 64974159 + 3 NA intron (NM_001321853, intron 2 of 26) intron (NM_001321853, intron 2 of 26) -7120 NM_001321856 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 539-52 chr12 46917974 46918298 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -92139 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 455-44 chr11 23635897 23636095 + 3 NA Intergenic L1MA1|LINE|L1 -216806 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 358-506 chr8 144560568 144560784 + 3 NA intron (NM_025251, intron 2 of 10) Cheshire|DNA|hAT-Charlie -31565 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 735-32 chr17 69836866 69837245 + 3 NA intron (NR_109972, intron 3 of 4) L3|LINE|CR1 -124652 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 635-119 chr8 139070928 139071248 + 3 NA Intergenic L1MD3|LINE|L1 -157047 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 465-22 chr10 19171761 19171956 + 3 NA intron (NM_001142308, intron 13 of 39) (TA)n|Simple_repeat|Simple_repeat 123057 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 477-301 chr9 80533976 80534175 + 3 NA Intergenic L1PA11|LINE|L1 559052 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 389-373 chr8 128276426 128276609 + 3 NA Intergenic Intergenic 126401 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 312-35 chr10 26293479 26293671 + 3 NA intron (NM_000818, intron 15 of 16) intron (NM_000818, intron 15 of 16) 76801 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 364-107 chr12 59157534 59157679 + 3 NA Intergenic HAL1|LINE|L1 -237068 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 590-114 chr3 153412680 153413038 + 3 NA intron (NR_146713, intron 5 of 6) L1PA15|LINE|L1 -71636 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 471-129 chr2 46689046 46689326 + 3 NA Intergenic Intergenic -9774 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 293-439 chr8 91761208 91761318 + 3 NA Intergenic Intergenic 256417 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 435-96 chr16 78602608 78602833 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 503066 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 988-37 chr8 59469028 59469554 + 3 NA Intergenic Intergenic 350081 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 784-4 chr1 112889473 112889922 + 3 NA Intergenic LTR47A|LTR|ERVL 7647 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 881-10 chr14 82521566 82522032 + 3 NA Intergenic Intergenic -120833 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 607-22 chr10 75588336 75588759 + 3 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 36089 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 635-37 chr16 74291894 74292281 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR -4727 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 531-13 chr1 181904050 181904263 + 3 NA Intergenic Intergenic 157556 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 492-38 chr11 55352001 55352313 + 3 NA Intergenic Intergenic 8956 NM_001005274 81327 Hs.554530 NM_001005274 ENSG00000181961 OR4A16 OR11-117|OR4A16Q olfactory receptor family 4 subfamily A member 16 protein-coding 451-260 chrX 120338558 120338828 + 3 NA Intergenic L1M5|LINE|L1 -23396 NM_012069 23439 Hs.292599 NM_012069 ENSG00000101892 ATP1B4 - ATPase Na+/K+ transporting family member beta 4 protein-coding 671-60 chr3 76797675 76798054 + 3 NA Intergenic L1MA3|LINE|L1 -242235 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 471-94 chr15 85353415 85353573 + 3 NA Intergenic Intergenic -27102 NR_106993 102465803 NR_106993 ENSG00000284160 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 249-425 chr8 115115186 115115352 + 3 NA Intergenic Intergenic 552744 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 525-260 chr8 96208082 96208312 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 27437 NR_045639 7381 Hs.131255 NM_006294 ENSG00000156467 UQCRB MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC ubiquinol-cytochrome c reductase binding protein protein-coding 304-569 chrX 77987615 77987842 + 3 NA intron (NR_104109, intron 2 of 9) intron (NR_104109, intron 2 of 9) -18090 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 453-10 chr1 104288969 104289158 + 3 NA Intergenic Intergenic 216040 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 692-108 chr9 27292175 27292540 + 3 NA intron (NM_001161585, intron 3 of 6) intron (NM_001161585, intron 3 of 6) 4782 NM_001161585 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 560-173 chr7 49299320 49299623 + 3 NA Intergenic L1M4|LINE|L1 374924 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 1417-7 chr5 178933054 178933831 + 3 NA TTS (NM_030613) TTS (NM_030613) -7756 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 879-6 chr13 47781005 47781375 + 3 NA Intergenic Intergenic 151432 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 465-214 chr5 6260507 6260747 + 3 NA Intergenic Intergenic 76665 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 763-57 chr6 150114811 150115390 + 3 NA Intergenic Intergenic -27944 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 715-82 chr7 62746626 62747036 + 3 NA Intergenic ALR/Alpha|Satellite|centr 557225 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 417-32 chr10 59167876 59168059 + 3 NA Intergenic Intergenic 8497 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 518-58 chr11 92020101 92020349 + 3 NA Intergenic L1MEc|LINE|L1 -204809 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 678-92 chr5 148695452 148695741 + 3 NA Intergenic Intergenic -41069 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 495-38 chr11 120354320 120354642 + 3 NA intron (NM_015313, intron 1 of 40) intron (NM_015313, intron 1 of 40) 18068 NM_015313 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 665-99 chr7 87766143 87766663 + 3 NA intron (NM_138290, intron 7 of 11) L1PA17|LINE|L1 -53080 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 503-191 chr3 27239552 27239856 + 3 NA intron (NM_199347, intron 24 of 24) L3b|LINE|CR1 -23181 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 627-118 chr8 99958176 99958560 + 3 NA Intergenic L1MCa|LINE|L1 -46214 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 414-188 chr20 54378153 54378372 + 3 NA Intergenic L1MEc|LINE|L1 -97331 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 230-375 chr8 79949972 79950099 + 3 NA intron (NM_014018, intron 2 of 2) A-rich|Low_complexity|Low_complexity -78298 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 287-295 chr4 164869116 164869234 + 3 NA Intergenic Intergenic -8003 NM_001297550 100506013 Hs.105196 NM_001297550 ENSG00000248329 APELA ELA|Ende|tdl apelin receptor early endogenous ligand protein-coding 947-6 chr15 26731376 26731937 + 3 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) -14891 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 475-239 chr6 39490576 39490855 + 3 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -59325 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 576-41 chr13 80543338 80543602 + 3 NA Intergenic Intergenic -202344 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 488-187 chr4 38467096 38467304 + 3 NA intron (NR_110951, intron 2 of 7) MIRb|SINE|MIR -42567 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 944-6 chr11 60670174 60670636 + 3 NA intron (NR_026946, intron 6 of 6) L1M4b|LINE|L1 -29207 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 631-135 chrX 62706948 62707245 + 3 NA Intergenic ALR/Alpha|Satellite|centr 644236 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 386-92 chr14 47869466 47869669 + 3 NA Intergenic L1ME2|LINE|L1 -74553 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 474-7 chr1 77406094 77406287 + 3 NA intron (NM_012093, intron 6 of 13) intron (NM_012093, intron 6 of 13) 123103 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 480-193 chr3 111109442 111109702 + 3 NA intron (NM_001243288, intron 1 of 8) L1M5|LINE|L1 37756 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 510-207 chr4 62981980 62982276 + 3 NA Intergenic Intergenic -820363 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 463-264 chr7 41570365 41570572 + 3 NA Intergenic Intergenic -123451 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 430-168 chr2 188860620 188860792 + 3 NA Intergenic L1M4|LINE|L1 -70583 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 705-65 chr21 28394848 28395378 + 3 NA Intergenic HERVL18-int|LTR|ERVL -144205 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 424-274 chr8 68802322 68802479 + 3 NA intron (NR_146187, intron 12 of 13) L1ME4a|LINE|L1 301790 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 693-48 chr19 9384801 9385079 + 3 NA Intergenic L1M5|LINE|L1 8624 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 270-204 chr20 6539821 6540013 + 3 NA Intergenic Intergenic 113185 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 497-220 chr5 25371005 25371244 + 3 NA Intergenic L1MA2|LINE|L1 180171 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 551-122 chr3 98633793 98634159 + 3 NA Intergenic L1M4|LINE|L1 -40365 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 812-56 chr9 26050395 26050941 + 3 NA Intergenic Intergenic -16007 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 687-10 chr1 227584209 227584638 + 3 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 20867 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 408-279 chr5 135637534 135637778 + 3 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) 16279 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 519-246 chr8 139868377 139868643 + 3 NA intron (NM_001160372, intron 21 of 22) MIRb|SINE|MIR -165387 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 637-109 chr7 46826110 46826522 + 3 NA Intergenic L1MC3|LINE|L1 -129194 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 233-75 chr12 33575586 33575701 + 3 NA Intergenic L1M4|LINE|L1 -135824 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 313-577 chrX 152402925 152403098 + 3 NA intron (NM_000808, intron 1 of 9) intron (NM_000808, intron 1 of 9) -8519 NR_029522 406898 NR_029522 ENSG00000207818 MIR105-2 MIRN105-2|mir-105-2 microRNA 105-2 ncRNA 505-161 chr2 176927585 176927889 + 3 NA Intergenic Intergenic 284674 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 279-38 chr10 55709578 55709713 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -81703 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 807-33 chr2 220765729 220766069 + 3 NA Intergenic Intergenic 806405 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 586-90 chr20 52620745 52621054 + 3 NA promoter-TSS (NR_110038) promoter-TSS (NR_110038) 61 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 358-362 chr5 28424082 28424283 + 3 NA Intergenic Intergenic -136517 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 505-175 chr20 16874490 16874806 + 3 NA Intergenic Intergenic 126295 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 363-177 chr17 47329438 47329722 + 3 NA intron (NM_001195192, intron 4 of 21) intron (NM_001195192, intron 4 of 21) 5625 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 908-43 chr8 77357747 77358091 + 3 NA Intergenic L1MDa|LINE|L1 -92778 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 947-9 chr16 65883665 65884225 + 3 NA Intergenic L1ME3Cz|LINE|L1 -307645 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 388-30 chr1 222291576 222291777 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 256428 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 574-97 chr20 52900336 52900623 + 3 NA Intergenic MER58B|DNA|hAT-Charlie -71879 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 697-40 chr2 5943809 5944216 + 3 NA intron (NR_026832, intron 1 of 1) intron (NR_026832, intron 1 of 1) 11325 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 389-128 chr16 87997303 87997479 + 3 NA intron (NM_017869, intron 4 of 11) MIRc|SINE|MIR 27373 NM_001173543 54971 Hs.461705 NM_017869 ENSG00000172530 BANP BEND1|SMAR1|SMARBP1 BTG3 associated nuclear protein protein-coding 560-89 chr2 179375923 179376217 + 3 NA Intergenic Intergenic -111238 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 558-71 chr17 53991176 53991504 + 3 NA Intergenic MER21-int|LTR|ERVL 168413 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 357-125 chr15 24975903 24976139 + 3 NA intron (NM_001349455, intron 8 of 12) intron (NM_001349455, intron 8 of 12) -5973 NR_022011 347746 Hs.733072 NR_022011 PWARSN PAR-SN|PARSN Prader Willi/Angelman region RNA, SNRPN neighbor ncRNA 560-65 chr17 40735119 40735439 + 3 NA Intergenic Intergenic 20052 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 450-42 chr10 130687402 130687600 + 3 NA Intergenic Intergenic 275167 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 689-74 chr5 2361548 2361923 + 3 NA Intergenic L1M3b|LINE|L1 -49534 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 488-217 chr5 86153877 86154164 + 3 NA Intergenic L1MEf|LINE|L1 -128424 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 744-30 chr2 65906642 65907087 + 3 NA Intergenic L1ME3B|LINE|L1 451464 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 772 chr1 9035040 9035493 + 3 NA 3' UTR (NM_001328620, exon 12 of 12) 3' UTR (NM_001328620, exon 12 of 12) -8921 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 758-63 chr5 22328872 22329139 + 3 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -115155 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 530-189 chr5 13908237 13908513 + 3 NA intron (NM_001369, intron 12 of 78) intron (NM_001369, intron 12 of 78) 36105 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 254-134 chr15 86146091 86146247 + 3 NA intron (NM_152336, intron 3 of 24) MER2|DNA|TcMar-Tigger -29452 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 386-177 chr2 99035299 99035564 + 3 NA exon (NM_025244, exon 17 of 21) exon (NM_025244, exon 17 of 21) -99206 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 544-218 chr7 111797345 111797594 + 3 NA intron (NM_001363540, intron 30 of 52) HUERS-P3-int|LTR|ERV1 -11036 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 713-65 chr4 57575140 57575488 + 3 NA Intergenic Intergenic 149442 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 370-175 chr17 13085177 13085423 + 3 NA Intergenic Intergenic -67236 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 601-127 chr5 130816793 130817159 + 3 NA Intergenic Intergenic 348280 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 517-165 chr21 30301317 30301512 + 3 NA Intergenic Intergenic -11900 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 823-3 chr1 169634089 169634639 + 3 NA Intergenic L1MA8|LINE|L1 -4240 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 709-100 chr9 87338596 87339173 + 3 NA Intergenic Intergenic -158344 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 608-138 chr6 169002656 169003027 + 3 NA Intergenic L1MEc|LINE|L1 32802 NR_134622 101929460 Hs.355225 NR_134622 ENSG00000229720 LOC101929460 - uncharacterized LOC101929460 ncRNA 892-6 chr10 62312174 62312551 + 3 NA Intergenic Intergenic -43518 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 433-156 chr20 54748749 54749060 + 3 NA Intergenic MER65A|LTR|ERV1 273311 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 548-179 chr5 37996109 37996361 + 3 NA Intergenic Intergenic -29462 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 533-179 chr5 46058134 46058322 + 3 NA Intergenic ALR/Alpha|Satellite|centr -361848 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 496-293 chr8 115149641 115149916 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR 518235 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 482-124 chr2 63649164 63649483 + 3 NA Intergenic L1MB7|LINE|L1 60172 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 575-163 chr6 6270890 6271158 + 3 NA intron (NM_000129, intron 3 of 14) intron (NM_000129, intron 3 of 14) 49667 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 546-224 chr7 62728453 62728650 + 3 NA Intergenic ALR/Alpha|Satellite|centr 575505 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 182-31 chr11 96722079 96722152 + 3 NA Intergenic L1M5|LINE|L1 213690 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 261-170 chr2 11052074 11052208 + 3 NA Intergenic Intergenic 80035 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 486-30 chr10 43031858 43032146 + 3 NA Intergenic L1M4c|LINE|L1 34439 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 666-103 chr6 69781314 69781731 + 3 NA intron (NM_001367272, intron 2 of 15) intron (NM_001367272, intron 2 of 15) 14944 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 253-433 chr9 80936146 80936314 + 3 NA Intergenic Intergenic 753305 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 394-168 chr2 59619163 59619343 + 3 NA Intergenic Intergenic 401545 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 529-56 chr13 29664257 29664611 + 3 NA Intergenic L1ME3G|LINE|L1 16741 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 407-9 chr1 115746496 115746724 + 3 NA intron (NM_001232, intron 1 of 10) L1MD1|LINE|L1 22195 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 748-36 chr15 80373775 80374213 + 3 NA Intergenic Intergenic -30388 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 285-46 chr10 94569875 94570078 + 3 NA intron (NM_001289075, intron 6 of 20) L1MC5a|LINE|L1 24188 NM_001289073 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 549-44 chr12 30055902 30056211 + 3 NA Intergenic LTR12|LTR|ERV1 -271297 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 441-227 chr6 86221909 86222123 + 3 NA Intergenic L1MA4A|LINE|L1 -543283 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 562-184 chr5 161205173 161205422 + 3 NA Intergenic L1MEc|LINE|L1 -266671 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 341 chr1 4277780 4277957 + 3 NA Intergenic Intergenic -134183 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 436-304 chr8 85477622 85477809 + 3 NA intron (NM_000067, intron 6 of 6) intron (NM_000067, intron 6 of 6) -12800 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 433-265 chr7 55799553 55799859 + 3 NA intron (NM_207366, intron 9 of 9) L1M2|LINE|L1 63046 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 415-34 chr10 99799107 99799397 + 3 NA exon (NM_000392, exon 8 of 32) exon (NM_000392, exon 8 of 32) 16612 NM_000392 1244 Hs.368243 NM_000392 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP binding cassette subfamily C member 2 protein-coding 509-93 chr17 61810582 61810817 + 3 NA intron (NM_032043, intron 6 of 19) intron (NM_032043, intron 6 of 19) 52860 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 557-89 chr2 41497726 41498011 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 -379687 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 321-199 chr15 85351283 85351438 + 3 NA Intergenic Intergenic -29236 NR_106993 102465803 NR_106993 ENSG00000284160 MIR7706 hsa-mir-7706 microRNA 7706 ncRNA 557-65 chr16 72706572 72706833 + 3 NA Intergenic Intergenic -41732 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 939-34 chr9 84638789 84639270 + 3 NA Intergenic Intergenic -29429 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 765-69 chrX 4737218 4737625 + 3 NA Intergenic AluSx1|SINE|Alu -103849 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 474-50 chr11 94012759 94012967 + 3 NA Intergenic Intergenic -8491 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 495 chr1 14322255 14322479 + 3 NA Intergenic Intergenic 97606 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 587-19 chr10 115931079 115931315 + 3 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 263592 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 813 chr1 34444359 34444897 + 3 NA Intergenic Intergenic 225066 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 803-48 chr5 152999046 152999616 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -26982 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 639-17 chr10 98717697 98718036 + 3 NA intron (NM_021828, intron 5 of 11) intron (NM_021828, intron 5 of 11) 206702 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 809-10 chr14 44456824 44457196 + 3 NA Intergenic L1M2|LINE|L1 50273 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 758-81 chrUn_KI270333v1 14 413 + 3 NA NA SAR|Satellite|Satellite NA NA 380-402 chr8 115697869 115698165 + 3 NA Intergenic Intergenic -29042 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 722-45 chr2 146862672 146863042 + 3 NA Intergenic L1MEd|LINE|L1 275800 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 378-153 chr15 94958116 94958345 + 3 NA Intergenic L1MA6|LINE|L1 102867 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 603-6 chr1 154311879 154312258 + 3 NA Intergenic AluSx1|SINE|Alu -9025 NM_080429 89872 Hs.259048 NM_080429 ENSG00000143595 AQP10 AQPA_HUMAN aquaporin 10 protein-coding 463-49 chr11 13506393 13506580 + 3 NA Intergenic Intergenic -10311 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 559-160 chr6 71649248 71649622 + 3 NA Intergenic L1MEg|LINE|L1 228408 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 795-35 chr22 35189312 35189763 + 3 NA intron (NR_126356, intron 2 of 5) L1PREC2|LINE|L1 41519 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 589-173 chrX 94105894 94106168 + 3 NA Intergenic Intergenic 431825 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 591-140 chr5 143320707 143321071 + 3 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 82394 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 368-151 chr14 79092512 79092678 + 3 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -107387 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 380-182 chr2 77984288 77984505 + 3 NA intron (NR_110288, intron 1 of 3) L1MA4|LINE|L1 -29370 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 310-518 chr8 87916636 87916782 + 3 NA Intergenic Intergenic -42694 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 531-154 chr3 65161187 65161599 + 3 NA Intergenic L1MB7|LINE|L1 -473393 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 268-419 chr8 128091609 128091708 + 3 NA intron (NR_003367, intron 6 of 8) intron (NR_003367, intron 6 of 8) 42506 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 679-42 chr16 81840102 81840450 + 3 NA intron (NM_002661, intron 2 of 32) intron (NM_002661, intron 2 of 32) 60985 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 1369-2 chr5 28987440 28988209 + 3 NA Intergenic Intergenic 60954 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 569-109 chr20 19386330 19386659 + 3 NA intron (NM_020689, intron 2 of 16) L1MA9|LINE|L1 -101898 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 475-190 chr3 163863177 163863405 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 308265 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 569-38 chr11 76531855 76532080 + 3 NA intron (NM_001300942, intron 15 of 21) intron (NM_001300942, intron 15 of 21) 86942 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 707-77 chr4 170631215 170631534 + 3 NA Intergenic Intergenic 112361 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 484-69 chr14 92256108 92256290 + 3 NA Intergenic LTR16C|LTR|ERVL -66382 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 395-214 chr22 40524197 40524373 + 3 NA intron (NR_109965, intron 3 of 3) AluJb|SINE|Alu 2485 NR_109965 101927257 Hs.662725 NR_109965 ENSG00000232564 MRTFA-AS1 - MRTFA antisense RNA 1 ncRNA 523-263 chr8 53548497 53548788 + 3 NA Intergenic L1PB4|LINE|L1 -24677 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 455-195 chr4 137850404 137850620 + 3 NA Intergenic L1MCc|LINE|L1 -238502 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 362-228 chr2 139893739 139893890 + 3 NA Intergenic Intergenic 692871 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 524-70 chr14 104017812 104018110 + 3 NA intron (NM_153046, intron 22 of 35) intron (NM_153046, intron 22 of 35) -67739 NM_001080464 374569 Hs.146239 NM_001080464 ENSG00000166183 ASPG C14orf76|GPA/WT|LYSOLP asparaginase protein-coding 721-62 chr4 37196044 37196471 + 3 NA Intergenic Ricksha_0|DNA|MULE-MuDR 45734 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 307-396 chr5 131339378 131339570 + 3 NA intron (NM_020240, intron 2 of 5) L1ME1|LINE|L1 75465 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 464-29 chr10 131845300 131845496 + 3 NA Intergenic Intergenic -55199 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 707-104 chr8 91548025 91548371 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 298879 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 587-96 chr21 31629851 31630248 + 3 NA Intergenic Intergenic -29573 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 652-2 chr1 49274765 49275132 + 3 NA intron (NR_136623, intron 2 of 12) LTR49-int|LTR|ERV1 17537 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 481-227 chr4 105015047 105015318 + 3 NA Intergenic Intergenic -130693 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 518-313 chr9 76743605 76743826 + 3 NA intron (NM_001308048, intron 6 of 17) L1ME3G|LINE|L1 -20721 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 455-207 chr5 8814226 8814470 + 3 NA Intergenic Intergenic -25384 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 1017-4 chr11 54883318 54883847 + 3 NA Intergenic ALR/Alpha|Satellite|centr 176750 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 397-212 chr3 143913093 143913226 + 3 NA Intergenic L1MA2|LINE|L1 -58639 NM_173552 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 878-50 chr8 91908762 91909279 + 3 NA Intergenic Intergenic 108660 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 497-295 chr8 134272322 134272586 + 3 NA Intergenic MER110|LTR|ERV1 -325617 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 581-122 chr4 144259725 144260136 + 3 NA Intergenic L1MA4|LINE|L1 -119212 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 1087-9 chr2 229281711 229282181 + 3 NA Intergenic Intergenic -10659 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 465-27 chr10 44102461 44102636 + 3 NA Intergenic L3|LINE|CR1 190146 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 633-5 chr1 158735684 158736027 + 3 NA Intergenic Intergenic -17740 NM_001005327 391114 Hs.554488 NM_001005327 ENSG00000203757 OR6K3 OR1-18 olfactory receptor family 6 subfamily K member 3 protein-coding 535-245 chr8 119348836 119349162 + 3 NA Intergenic L1MC1|LINE|L1 23828 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 439-233 chr5 53865474 53865662 + 3 NA Intergenic MIRb|SINE|MIR -45886 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 321-236 chr17 69756317 69756547 + 3 NA intron (NR_109972, intron 3 of 4) L3b|LINE|CR1 162445 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 283-355 chr5 41687671 41687838 + 3 NA Intergenic Intergenic 155903 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 474-292 chr8 112092899 112093196 + 3 NA Intergenic L1P4b|LINE|L1 -550446 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 520-302 chr8 112056780 112056983 + 3 NA Intergenic L1PA15|LINE|L1 -586612 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 434-103 chr16 80386015 80386233 + 3 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -154610 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 501-96 chr2 16924185 16924481 + 3 NA Intergenic Intergenic -258499 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 299-106 chr12 78698634 78698761 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -165285 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 657-59 chr20 55388247 55388618 + 3 NA Intergenic LTR79|LTR|ERVL -34611 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 668-93 chr7 694436 694737 + 3 NA intron (NM_001164760, intron 2 of 10) L2c|LINE|L2 17938 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 611-83 chr2 208919669 208919955 + 3 NA Intergenic Intergenic 377170 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 348-105 chr12 13245179 13245388 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 48557 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 475-277 chr8 56490292 56490553 + 3 NA intron (NR_125813, intron 1 of 3) L1MD1|LINE|L1 -43781 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 678-56 chr2 108110283 108110616 + 3 NA Intergenic L1PA11|LINE|L1 -57694 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 445-247 chr7 19827627 19827812 + 3 NA Intergenic L1MA7|LINE|L1 -54102 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 1106-3 chr11 81692123 81692895 + 3 NA Intergenic Intergenic 198327 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 556-181 chr5 124246098 124246498 + 3 NA intron (NR_125774, intron 4 of 5) L1PB3|LINE|L1 192222 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 572-32 chr12 2162801 2163012 + 3 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 60575 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 929-22 chr2 104966802 104967311 + 3 NA intron (NR_110603, intron 1 of 2) L1MC5a|LINE|L1 -71013 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 518-29 chr10 55207250 55207528 + 3 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -391653 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 558-213 chr8 84159536 84159867 + 3 NA Intergenic L1MC3|LINE|L1 -23086 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 1020-2 chr1 193986512 193987081 + 3 NA Intergenic L1PA13|LINE|L1 682051 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 643-23 chr12 37282622 37283001 + 3 NA Intergenic ALR/Alpha|Satellite|centr -1033963 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 508-165 chr4 43302627 43302822 + 3 NA Intergenic L1MA9|LINE|L1 189819 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 577-74 chr17 53867107 53867329 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 44291 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 430-265 chr6 82800162 82800344 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 265588 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 305-25 chr1 112123671 112123795 + 3 NA Intergenic L1M6|LINE|L1 133197 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 593-133 chr7 35369569 35369965 + 3 NA intron (NR_038864, intron 2 of 2) intron (NR_038864, intron 2 of 2) 55912 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 492-172 chr3 38470567 38470816 + 3 NA intron (NM_001106, intron 1 of 10) L1MEd|LINE|L1 -15871 NR_028389 100128640 Hs.570596 NR_028389 ENSG00000229589 ACVR2B-AS1 - ACVR2B antisense RNA 1 ncRNA 483-244 chr7 51496228 51496519 + 3 NA Intergenic L1MA1|LINE|L1 -103117 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 451-150 chr3 121114605 121114845 + 3 NA intron (NR_145517, intron 5 of 8) MIRb|SINE|MIR 65085 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 453-116 chr2 82868831 82868991 + 3 NA Intergenic AluSx|SINE|Alu 12108 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 200-39 chr10 120247055 120247138 + 3 NA Intergenic L2|LINE|L2 108127 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 712-8 chr1 181858896 181859292 + 3 NA Intergenic L3|LINE|CR1 202618 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 426-176 chr3 28967171 28967346 + 3 NA Intergenic L1MA4A|LINE|L1 313681 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 510-81 chr14 82009127 82009451 + 3 NA Intergenic LTR101_Mam|LTR|ERVL -266151 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 458-42 chr11 97735138 97735471 + 3 NA Intergenic L1PA11|LINE|L1 1226879 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 282-274 chr22 19825315 19825493 + 3 NA intron (NM_053004, intron 2 of 7) AluJo|SINE|Alu 29470 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 342-141 chr14 51521877 51522066 + 3 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 32843 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 414-163 chr2 125785201 125785383 + 3 NA Intergenic L1M8|LINE|L1 332693 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 425-257 chr6 37811477 37811650 + 3 NA Intergenic AluY|SINE|Alu -8164 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 466-51 chr11 96635002 96635249 + 3 NA Intergenic L2b|LINE|L2 126700 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 743-9 chr10 29896805 29897184 + 3 NA Intergenic Intergenic -160058 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 652-67 chr2 103859113 103859368 + 3 NA Intergenic Intergenic 549092 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 453-198 chr5 17197128 17197342 + 3 NA intron (NR_027253, intron 1 of 2) HAL1|LINE|L1 -19588 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 492-269 chr8 131900292 131900553 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -3671 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 309-537 chr8 69290592 69290740 + 3 NA Intergenic Intergenic 157578 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 497-9 chr1 107333296 107333662 + 3 NA intron (NM_001113226, intron 2 of 6) MER103C|DNA|hAT-Charlie 185410 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 336-499 chr6 162889236 162889468 + 3 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 161382 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 433-233 chr5 141422221 141422422 + 3 NA exon (NM_032091, exon 1 of 1) exon (NM_032091, exon 1 of 1) 1270 NM_018914 56105 Hs.368160 NM_018914 ENSG00000253873 PCDHGA11 PCDH-GAMMA-A11 protocadherin gamma subfamily A, 11 protein-coding 358-269 chr21 14230885 14231090 + 3 NA Intergenic Intergenic 14830 NR_135308 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 480-46 chr11 71177448 71177680 + 3 NA intron (NM_012309, intron 1 of 24) L1MEc|LINE|L1 47232 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 524-173 chr4 59428184 59428372 + 3 NA Intergenic L1MA6|LINE|L1 414705 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 496-81 chr14 52844475 52844810 + 3 NA Intergenic Intergenic -53035 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 357-471 chr8 142842342 142842516 + 3 NA intron (NM_002066, intron 3 of 3) L1MEg1|LINE|L1 7628 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 473-7 chr1 79589707 79589977 + 3 NA Intergenic Intergenic -583112 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 441-56 chr12 59710763 59711045 + 3 NA intron (NM_001270623, intron 3 of 5) intron (NM_001270623, intron 3 of 5) 21534 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 415-283 chr8 87823630 87823812 + 3 NA Intergenic MER92-int|LTR|ERV1 50294 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 345-511 chr8 29075005 29075154 + 3 NA intron (NM_015254, intron 38 of 39) intron (NM_015254, intron 38 of 39) 183765 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 610-5 chr1 98446295 98446574 + 3 NA Intergenic L1PB4|LINE|L1 -215287 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 487-27 chr1 187536886 187537068 + 3 NA Intergenic Intergenic 93349 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 798-33 chr20 46528152 46528513 + 3 NA Intergenic Intergenic -14760 NM_001270497 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 479-59 chr14 55903790 55903982 + 3 NA Intergenic Intergenic -107212 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 427-238 chr7 25429110 25429373 + 3 NA Intergenic Intergenic -200755 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 464-206 chr5 125209953 125210142 + 3 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 173216 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 775-13 chr11 5022141 5022531 + 3 NA Intergenic L1M3a|LINE|L1 23353 NM_001004755 119682 Hs.553559 NM_001004755 ENSG00000176798 OR51L1 OR11-31 olfactory receptor family 51 subfamily L member 1 protein-coding 453-48 chr12 25007985 25008239 + 3 NA intron (NM_001321724, intron 3 of 17) L1MC5|LINE|L1 10537 NM_001321724 645177 Hs.569157 NM_001321724 LOC645177 - uncharacterized LOC645177 protein-coding 496-34 chr10 54295580 54295823 + 3 NA intron (NM_001354411, intron 8 of 34) LTR12_|LTR|ERV1 -190529 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 305-55 chr10 20540805 20541004 + 3 NA Intergenic Intergenic -11066 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 495-211 chr6 23624903 23625164 + 3 NA Intergenic L1MCc|LINE|L1 -501182 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 586-22 chr10 99283221 99283532 + 3 NA Intergenic AluJb|SINE|Alu -45723 NM_001345888 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 441-15 chr1 214282057 214282259 + 3 NA intron (NM_020197, intron 1 of 11) (TATG)n|Simple_repeat|Simple_repeat 999 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 522-89 chr14 92201802 92202142 + 3 NA Intergenic L2a|LINE|L2 80003 NM_001322270 53981 Hs.657632 NM_017437 ENSG00000165934 CPSF2 CPSF100 cleavage and polyadenylation specific factor 2 protein-coding 485-303 chr9 4256274 4256513 + 3 NA intron (NM_001042413, intron 2 of 10) L1M5|LINE|L1 43675 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 334-319 chr21 30685549 30685758 + 3 NA Intergenic Intergenic 33124 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 507-106 chr18 65692972 65693289 + 3 NA Intergenic Intergenic -57122 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 383-296 chr4 149143792 149144020 + 3 NA Intergenic (TCTTCC)n|Simple_repeat|Simple_repeat -10389 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 575-73 chr18 60514642 60514947 + 3 NA Intergenic Intergenic -142019 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 356-61 chr10 90322138 90322319 + 3 NA Intergenic Intergenic 218577 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 311-256 chr2 81914084 81914288 + 3 NA Intergenic MER1A|DNA|hAT-Charlie -447240 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 782-40 chr21 32121248 32121812 + 3 NA Intergenic Intergenic -35235 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 327-9 chr1 75280901 75281091 + 3 NA intron (NM_001320283, intron 3 of 21) THE1C-int|LTR|ERVL-MaLR 146608 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 622-132 chr7 94996985 94997360 + 3 NA intron (NM_017650, intron 2 of 15) L1MEc|LINE|L1 87274 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 287-265 chr3 148886916 148887090 + 3 NA intron (NM_001870, intron 10 of 10) intron (NM_001870, intron 10 of 10) 21707 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 747-48 chr4 37141917 37142404 + 3 NA Intergenic L1MA1|LINE|L1 99831 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 456-80 chr13 85209582 85209744 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -61606 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 711-32 chr2 5408417 5408783 + 3 NA Intergenic Intergenic 282518 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 569-140 chr5 1742578 1742768 + 3 NA Intergenic L1MC1|LINE|L1 -33805 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 513-251 chr6 110932809 110933036 + 3 NA Intergenic FLAM_A|SINE|Alu -25784 NM_138408 112495 Hs.418520 NM_138408 ENSG00000155115 GTF3C6 C6orf51|TFIIIC35|bA397G5.3 general transcription factor IIIC subunit 6 protein-coding 359-267 chr2 214492650 214492921 + 3 NA intron (NM_001080500, intron 3 of 3) MLT1I|LTR|ERVL-MaLR -17397 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 786-63 chr7 91522529 91523007 + 3 NA Intergenic L1ME2|LINE|L1 258335 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 168-24 chr13 51505318 51505394 + 3 NA Intergenic L1ME2|LINE|L1 -47233 NR_039852 100616423 NR_039852 ENSG00000266611 MIR4703 - microRNA 4703 ncRNA 476-2 chr1 18981229 18981415 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -24646 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 393-41 chr10 89154276 89154545 + 3 NA Intergenic L1MB1|LINE|L1 52907 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 412-234 chr4 62986118 62986327 + 3 NA Intergenic L1MC5a|LINE|L1 -824457 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 251-169 chr2 59335282 59335440 + 3 NA Intergenic L1MA4|LINE|L1 117653 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 663-32 chr12 127404430 127404806 + 3 NA Intergenic Intergenic -64546 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 781-31 chr2 5205460 5205904 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 485436 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 537-248 chr8 70433831 70434175 + 3 NA Intergenic L2|LINE|L2 -29786 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 452-158 chr21 15365354 15365670 + 3 NA Intergenic Intergenic -300512 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 411-284 chr8 16582013 16582252 + 3 NA Intergenic L1M4|LINE|L1 -389341 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 551-171 chr5 141007683 141008010 + 3 NA intron (NM_018911, intron 3 of 3) MER34B|LTR|ERV1 41079 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 369-389 chr7 99311474 99311634 + 3 NA Intergenic Intergenic -14319 NM_001190996 10552 Hs.124126 NM_006409 ENSG00000241685 ARPC1A Arc40|HEL-68|HEL-S-307|SOP2Hs|SOP2L actin related protein 2/3 complex subunit 1A protein-coding 465-112 chr18 1464835 1465054 + 3 NA Intergenic Intergenic -105315 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 471-165 chr3 14740459 14740716 + 3 NA intron (NM_001184957, intron 12 of 16) Tigger1|DNA|TcMar-Tigger 65446 NM_032137 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 635-28 chr14 49197352 49197773 + 3 NA Intergenic Intergenic 388818 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 767-57 chr8 135022806 135023166 + 3 NA Intergenic L1MA4A|LINE|L1 173051 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 642-60 chr2 195548265 195548668 + 3 NA Intergenic LTR1F|LTR|ERV1 -108492 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 652-57 chr18 13971300 13971643 + 3 NA Intergenic Intergenic -55764 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 733-69 chr6 12563137 12563454 + 3 NA Intergenic L1PB1|LINE|L1 22109 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 401-144 chr19 30358488 30358644 + 3 NA Intergenic Intergenic -13818 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 492-71 chr12 119602945 119603245 + 3 NA intron (NM_001136534, intron 1 of 2) AluSx1|SINE|Alu 9321 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 215-101 chr16 58276902 58276979 + 3 NA intron (NM_014157, intron 7 of 8) L1ME4b|LINE|L1 18085 NM_001305173 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 514-148 chr2 82481994 82482386 + 3 NA Intergenic Tigger9b|DNA|TcMar-Tigger -374613 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 594-119 chr5 137721913 137722208 + 3 NA promoter-TSS (NM_001257194) promoter-TSS (NM_001257194) -750 NM_001257194 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 986-10 chr11 29030496 29031075 + 3 NA Intergenic L1ME4b|LINE|L1 -553237 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 239-249 chr3 103553871 103554023 + 3 NA Intergenic Intergenic -29831 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 974-4 chr14 62800990 62801533 + 3 NA intron (NM_139318, intron 9 of 10) intron (NM_139318, intron 9 of 10) 244197 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 1147-7 chr8 111130650 111131145 + 3 NA intron (NR_125418, intron 1 of 3) MIRb|SINE|MIR -103464 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 1140-8 chr2 104167094 104167698 + 3 NA Intergenic Intergenic 240936 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 364-251 chr21 15640120 15640299 + 3 NA Intergenic Intergenic -89725 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 322-259 chr2 113780845 113781025 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -24293 NR_104470 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 412-132 chr18 10977837 10978012 + 3 NA intron (NM_022068, intron 3 of 51) L1MB7|LINE|L1 170838 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 492-150 chr20 17724604 17724933 + 3 NA intron (NM_178477, intron 2 of 3) intron (NM_178477, intron 2 of 3) 24820 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 492-259 chr8 76629331 76629634 + 3 NA intron (NR_024360, intron 2 of 3) intron (NR_024360, intron 2 of 3) -51765 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 445-222 chr5 122735805 122736073 + 3 NA Intergenic L1MC5a|LINE|L1 -5379 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 642-91 chr5 17768630 17769076 + 3 NA Intergenic MIRc|SINE|MIR -38421 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 555-194 chr7 145803848 145804073 + 3 NA Intergenic Intergenic -967907 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 529-62 chr14 24518348 24518576 + 3 NA Intergenic Intergenic -10197 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 533-212 chr7 25617939 25618292 + 3 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 45025 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 299-299 chr3 156920675 156920867 + 3 NA intron (NM_001004316, intron 4 of 12) intron (NM_001004316, intron 4 of 12) 94418 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 453-251 chr7 36171341 36171565 + 3 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 18199 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 268-265 chr3 193106796 193106947 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -134351 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 449-294 chr9 96728951 96729187 + 3 NA Intergenic U2|snRNA|snRNA 3248 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 412-309 chr7 51582915 51583121 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -189762 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 583-45 chr12 87434120 87434392 + 3 NA Intergenic MER57-int|LTR|ERV1 103517 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 488-282 chr9 12010402 12010598 + 3 NA Intergenic Intergenic -682885 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 832-6 chr12 72826893 72827283 + 3 NA Intergenic Intergenic -332102 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 704-6 chr1 181613984 181614317 + 3 NA intron (NM_001205293, intron 6 of 47) Tigger2|DNA|TcMar-Tigger 130633 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 489-110 chr17 71156888 71157110 + 3 NA intron (NR_104152, intron 2 of 3) L2|LINE|L2 45180 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 463-145 chr2 114541213 114541370 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 79714 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 871-12 chr18 72425206 72425672 + 3 NA Intergenic Intergenic 118903 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 417-75 chr14 33521555 33521728 + 3 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -187296 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 791-38 chr2 122301354 122301991 + 3 NA Intergenic L1PA15|LINE|L1 546021 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 502-118 chr18 9142306 9142518 + 3 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 4849 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 447-238 chr6 145095620 145095886 + 3 NA Intergenic Intergenic 591124 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 326-201 chr17 80362338 80362467 + 3 NA intron (NM_001256071, intron 39 of 67) L1ME4a|LINE|L1 -52765 NR_148041 284131 Hs.389678 NM_173627 ENSG00000173818 ENDOV - endonuclease V protein-coding 1064-11 chr3 73040787 73041454 + 3 NA intron (NM_001318025, intron 2 of 7) intron (NM_001318025, intron 2 of 7) -20539 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 560-85 chr2 143990988 143991188 + 3 NA intron (NM_001354353, intron 7 of 9) L1MEd|LINE|L1 54021 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 375-94 chr12 29005508 29005743 + 3 NA Intergenic Intergenic -143653 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 910-7 chr10 126898274 126898690 + 3 NA Intergenic L1MEc|LINE|L1 -6927 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 471-74 chr13 74717748 74717994 + 3 NA Intergenic L1ME1|LINE|L1 165028 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 616-86 chr2 96376770 96377093 + 3 NA 3' UTR (NM_001281710, exon 18 of 18) 3' UTR (NM_001281710, exon 18 of 18) 41165 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 462-231 chr5 103985486 103985795 + 3 NA Intergenic Intergenic -422851 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 1029 chr1 55647786 55648392 + 3 NA Intergenic MIR|SINE|MIR 296874 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 543-12 chr1 113847218 113847495 + 3 NA intron (NM_012411, intron 9 of 18) L1MDa|LINE|L1 -9279 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 501-98 chr2 47504895 47505146 + 3 NA Intergenic MER77|LTR|ERVL -22517 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 349-336 chr3 103160581 103160822 + 3 NA Intergenic Intergenic 363415 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 523-274 chr8 105954400 105954723 + 3 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 105942 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 283-274 chr22 24815021 24815225 + 3 NA intron (NM_001098498, intron 2 of 23) intron (NM_001098498, intron 2 of 23) 8902 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 562-171 chr5 38004225 38004532 + 3 NA Intergenic Intergenic -21319 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 686-16 chr11 78584913 78585284 + 3 NA Intergenic L1ME3A|LINE|L1 -10234 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 485-243 chr6 56220327 56220513 + 3 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 27160 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 978-7 chr14 66990699 66991091 + 3 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -198545 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 427-60 chr12 112705480 112705650 + 3 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -10389 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 446-235 chr5 42329806 42330032 + 3 NA Intergenic Intergenic -93520 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 681-13 chr11 122412665 122412915 + 3 NA intron (NR_137179, intron 1 of 4) LTR49-int|LTR|ERV1 10081 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 387-194 chr20 13175494 13175811 + 3 NA Intergenic L1MEd|LINE|L1 -45622 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 606-37 chr12 18734534 18734873 + 3 NA intron (NM_001330774, intron 3 of 14) L1MA10|LINE|L1 2806 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 704-34 chr18 14047490 14047842 + 3 NA Intergenic L1PA16|LINE|L1 84769 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 983-4 chr11 106284842 106285213 + 3 NA Intergenic Intergenic 33620 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 756-45 chr4 139873963 139874503 + 3 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 208414 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 636-60 chr18 10503197 10503465 + 3 NA Intergenic L1MB5|LINE|L1 -22696 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 500-190 chr3 137304179 137304380 + 3 NA Intergenic Intergenic 346296 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 685-17 chr12 41022523 41022772 + 3 NA intron (NM_001843, intron 20 of 23) intron (NM_001843, intron 20 of 23) 114290 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 855-8 chr11 48663440 48663894 + 3 NA Intergenic ALR/Alpha|Satellite|centr 174874 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 878-25 chr2 50035474 50036025 + 3 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -61546 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 695-102 chr8 32781699 32782127 + 3 NA Intergenic MIRb|SINE|MIR 60078 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 376-398 chr8 68162433 68162668 + 3 NA intron (NM_024870, intron 35 of 39) LTR49-int|LTR|ERV1 -167823 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 485-77 chr14 56287333 56287607 + 3 NA intron (NM_021255, intron 3 of 5) intron (NM_021255, intron 3 of 5) 169059 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 478-34 chr10 120249708 120249892 + 3 NA Intergenic Intergenic 105423 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 1017-27 chrX 70700864 70701385 + 3 NA intron (NM_001003811, intron 14 of 30) Tigger1|DNA|TcMar-Tigger 145171 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 411-157 chr2 184523371 184523522 + 3 NA Intergenic Intergenic -75083 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 630-159 chrX 121695124 121695589 + 3 NA Intergenic L1M2|LINE|L1 324384 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 539-165 chr5 38065714 38065963 + 3 NA intron (NR_147009, intron 2 of 2) L1PA13|LINE|L1 40141 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 728-72 chr5 20020005 20020445 + 3 NA intron (NM_001291956, intron 2 of 14) MSTA-int|LTR|ERVL-MaLR -32025 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 538-255 chr9 77537698 77537957 + 3 NA intron (NM_004297, intron 1 of 6) L1MA4A|LINE|L1 90178 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 412-262 chr5 113818634 113818886 + 3 NA Intergenic L1M5|LINE|L1 305066 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 455-152 chr20 58964580 58964863 + 3 NA Intergenic L1MCa|LINE|L1 -16535 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 350-223 chr2 59009136 59009375 + 3 NA intron (NR_033873, intron 7 of 13) L1ME1|LINE|L1 -208453 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 436-143 chr2 146069747 146069931 + 3 NA Intergenic L1MEf|LINE|L1 -517218 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 488-176 chr3 107758860 107759146 + 3 NA intron (NM_001276286, intron 10 of 16) intron (NM_001276286, intron 10 of 16) 119065 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 335-472 chr6 124180019 124180179 + 3 NA intron (NM_001300737, intron 2 of 7) (TATG)n|Simple_repeat|Simple_repeat -102906 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 601-91 chr3 53990692 53990968 + 3 NA Intergenic Intergenic -98971 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 178-15 chr10 21821967 21822050 + 3 NA intron (NM_022365, intron 8 of 11) intron (NM_022365, intron 8 of 11) 181722 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 347-460 chr7 34422163 34422312 + 3 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -235981 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 353-426 chr5 136338334 136338532 + 3 NA intron (NM_020389, intron 2 of 11) intron (NM_020389, intron 2 of 11) 27043 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 447-14 chr1 209535469 209535630 + 3 NA Intergenic Intergenic -48165 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 624-126 chr8 141908733 141909179 + 3 NA Intergenic Intergenic -122643 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 521-20 chr1 240038630 240038869 + 3 NA Intergenic Intergenic 31225 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 404-112 chr15 52892314 52892479 + 3 NA Intergenic L1ME4a|LINE|L1 -102060 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 301-479 chr9 28128350 28128520 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -554569 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 848-31 chr4 30460135 30460540 + 3 NA Intergenic LTR52|LTR|ERVL -260032 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 558-211 chr8 55695212 55695535 + 3 NA Intergenic L1ME3|LINE|L1 78005 NM_001363177 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 350-511 chr8 62565329 62565483 + 3 NA intron (NM_001304533, intron 1 of 6) MIR|SINE|MIR 316552 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 532-156 chr3 17680378 17680629 + 3 NA intron (NM_001134381, intron 1 of 23) AluJb|SINE|Alu 19517 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 414-240 chr4 86403003 86403270 + 3 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -32269 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 806-39 chr22 43654015 43654507 + 3 NA intron (NM_198856, intron 15 of 29) L1MC3|LINE|L1 138007 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 544-45 chr11 81389743 81389997 + 3 NA Intergenic Intergenic 500966 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 613-9 chr1 164225102 164225466 + 3 NA Intergenic MIRb|SINE|MIR -334076 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 802-29 chr2 17389783 17390178 + 3 NA Intergenic Intergenic 128460 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 637-80 chr21 31456412 31456778 + 3 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) 102492 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 506-82 chr14 44441905 44442112 + 3 NA Intergenic MLT2A1|LTR|ERVL 65275 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 959 chr1 54827631 54828274 + 3 NA intron (NM_001110533, intron 9 of 9) intron (NM_001110533, intron 9 of 9) 21889 NM_152607 163747 Hs.376018 NM_152607 ENSG00000162398 LEXM C1orf177|LEM lymphocyte expansion molecule protein-coding 435-219 chr6 84569436 84569680 + 3 NA Intergenic L1MEg|LINE|L1 -94629 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 665-23 chr12 60099320 60099710 + 3 NA Intergenic Intergenic 410145 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 573-73 chr17 10994302 10994509 + 3 NA Intergenic Intergenic -156318 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 513-153 chr2 170208940 170209210 + 3 NA intron (NM_001083615, intron 3 of 33) MER61-int|LTR|ERV1 30928 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 268-87 chr12 46799151 46799302 + 3 NA intron (NM_001143824, intron 1 of 15) intron (NM_001143824, intron 1 of 15) 26771 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 463-88 chr14 42574457 42574713 + 3 NA Intergenic L1MA3|LINE|L1 967729 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 408-336 chr8 86088335 86088512 + 3 NA Intergenic Intergenic -10487 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 395-256 chr4 109939993 109940229 + 3 NA intron (NM_001357021, intron 1 of 19) intron (NM_001357021, intron 1 of 19) 27228 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 450-4 chr1 67274096 67274307 + 3 NA Intergenic Intergenic -33163 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 521-113 chr19 37445028 37445228 + 3 NA intron (NM_152484, intron 2 of 5) intron (NM_152484, intron 2 of 5) 22316 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 483-21 chr10 20494652 20494950 + 3 NA Intergenic L1MCb|LINE|L1 -57169 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 488-34 chr10 118451691 118451870 + 3 NA Intergenic L1M8|LINE|L1 94672 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 222-109 chr14 39495442 39495553 + 3 NA Intergenic L2c|LINE|L2 -62997 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 525-60 chr12 118755549 118755743 + 3 NA Intergenic Intergenic 6033 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 504-214 chr5 76671114 76671365 + 3 NA intron (NM_006633, intron 23 of 35) AluSz|SINE|Alu -41164 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 468-100 chr16 17182990 17183165 + 3 NA intron (NM_022166, intron 5 of 11) MIRb|SINE|MIR 48573 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 357-242 chr20 51266452 51266658 + 3 NA Intergenic Intergenic 186422 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 555-182 chr7 19172246 19172512 + 3 NA Intergenic Intergenic -26958 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 197-203 chr8 85291853 85291927 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie 46432 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 227-15 chr1 117524459 117524602 + 3 NA 3' UTR (NM_006699, exon 13 of 13) 3' UTR (NM_006699, exon 13 of 13) 81240 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 383-26 chr1 240017593 240017750 + 3 NA Intergenic L1MB8|LINE|L1 10147 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 542-155 chr4 123525333 123525607 + 3 NA Intergenic Intergenic -124521 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 830-47 chr6 148010778 148011293 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -261293 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 360-16 chr1 180589341 180589576 + 3 NA Intergenic Intergenic 30484 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 386-261 chr4 59503203 59503458 + 3 NA Intergenic L1M2a|LINE|L1 489757 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 579-126 chr5 2876552 2876872 + 3 NA Intergenic Intergenic -41142 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 440-169 chr3 180429703 180429925 + 3 NA Intergenic L1M6B|LINE|L1 15641 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 980-4 chr1 223062162 223062526 + 3 NA Intergenic Intergenic 80904 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 326-171 chr15 65677770 65677926 + 3 NA intron (NM_005848, intron 22 of 31) L1M5|LINE|L1 19088 NR_145750 109617020 NR_145750 ENSG00000238311 SNORD13E - small nucleolar RNA, C/D box 13E snoRNA 251-381 chr7 122373078 122373170 + 3 NA intron (NM_001167940, intron 25 of 29) intron (NM_001167940, intron 25 of 29) -68374 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 534-230 chr7 7919979 7920234 + 3 NA Intergenic MIRc|SINE|MIR 48646 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 747-55 chr5 141313968 141314367 + 3 NA Intergenic Intergenic 6617 NM_005642 6879 Hs.438838 NM_005642 ENSG00000178913 TAF7 TAF2F|TAFII55 TATA-box binding protein associated factor 7 protein-coding 844-63 chr7 36859967 36860606 + 3 NA intron (NM_001206480, intron 21 of 21) Tigger2|DNA|TcMar-Tigger 59146 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 602-107 chr5 84961490 84961752 + 3 NA Intergenic MER52A|LTR|ERV1 -576741 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 433-53 chr12 2707980 2708227 + 3 NA Intergenic L1MB2|LINE|L1 -16946 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 633-78 chr3 44597200 44597529 + 3 NA 3' UTR (NM_173658, exon 3 of 3) 3' UTR (NM_173658, exon 3 of 3) 12400 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 557-123 chr21 44623783 44624146 + 3 NA intron (NM_144991, intron 1 of 11) L1MEg|LINE|L1 -3129 NM_198690 386676 Hs.474000 NM_198690 ENSG00000221837 KRTAP10-9 KAP10.9|KAP18.9|KRTAP18-9 keratin associated protein 10-9 protein-coding 1268-11 chr8 87496844 87497826 + 3 NA Intergenic L2a|LINE|L2 376680 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 527-286 chrUn_KI270442v1 96562 96928 + 3 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 839-48 chr8 51556252 51556785 + 3 NA intron (NM_144651, intron 4 of 22) intron (NM_144651, intron 4 of 22) 252927 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 299-502 chrX 99804672 99804836 + 3 NA Intergenic Intergenic 605519 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 413-263 chr6 50676416 50676641 + 3 NA Intergenic L1MC5a|LINE|L1 -37016 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 417-171 chr22 28392924 28393186 + 3 NA intron (NM_001145418, intron 2 of 22) AluJr|SINE|Alu -66814 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 422-244 chr5 111028924 111029237 + 3 NA Intergenic L1ME4b|LINE|L1 -41000 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 336-408 chr4 52054063 52054243 + 3 NA intron (NM_001346103, intron 1 of 8) MER3|DNA|hAT-Charlie 2849 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 226-78 chr13 28550843 28550943 + 3 NA Intergenic Intergenic -55765 NM_001160030 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 462-7 chr1 89180348 89180595 + 3 NA TTS (NM_052941) TTS (NM_052941) -4468 NM_207398 388646 Hs.591450 NM_207398 ENSG00000213512 GBP7 GBP4L guanylate binding protein 7 protein-coding 1270 chr1 79036327 79036960 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -29913 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 404-209 chr3 29594986 29595229 + 3 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 313795 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 640-118 chr6 82459249 82459532 + 3 NA Intergenic MIRb|SINE|MIR 95146 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 439-9 chr1 96190229 96190458 + 3 NA Intergenic L1ME3Cz|LINE|L1 183782 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 595-74 chr19 56526501 56526923 + 3 NA 3' UTR (NM_020813, exon 5 of 5) 3' UTR (NM_020813, exon 5 of 5) -12236 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 531-121 chr2 148386261 148386693 + 3 NA intron (NM_018328, intron 5 of 14) AluYa5|SINE|Alu -258274 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 882-24 chr2 162788762 162789261 + 3 NA intron (NR_110258, intron 4 of 4) L1MA9|LINE|L1 20075 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 809-8 chr12 77989645 77990171 + 3 NA intron (NM_001024383, intron 5 of 39) L1MC5|LINE|L1 159014 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 262-215 chr2 108332398 108332564 + 3 NA intron (NR_037191, intron 3 of 3) intron (NR_037191, intron 3 of 3) 10243 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 461-51 chr11 90680418 90680644 + 3 NA intron (NR_104190, intron 3 of 6) Tigger1|DNA|TcMar-Tigger -124674 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 402-117 chr18 3568431 3568724 + 3 NA intron (NM_001242762, intron 5 of 9) intron (NM_001242762, intron 5 of 9) -25537 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 528-38 chr10 82504436 82504752 + 3 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -271674 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 631-121 chr7 97741303 97741753 + 3 NA Intergenic Intergenic 9442 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 575-41 chr12 37884795 37885014 + 3 NA Intergenic ALR/Alpha|Satellite|centr -431870 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 735-21 chr14 53230515 53230946 + 3 NA Intergenic Intergenic 77376 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 470-119 chr2 30549687 30549995 + 3 NA intron (NM_182551, intron 4 of 6) intron (NM_182551, intron 4 of 6) 102595 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 422-208 chr4 34491442 34491611 + 3 NA Intergenic Intergenic -221779 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 590-38 chr12 133065623 133065993 + 3 NA Intergenic HERV16-int|LTR|ERVL -14395 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 458-215 chr5 172258794 172259041 + 3 NA intron (NM_152277, intron 1 of 2) L1PA15|LINE|L1 24847 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 458-156 chr20 54750731 54751016 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 275280 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 1452-6 chr2 118427022 118427908 + 3 NA Intergenic Intergenic 175501 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 705-100 chr8 70518881 70519264 + 3 NA Intergenic AluJr4|SINE|Alu 47938 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 560-130 chr4 144294249 144294544 + 3 NA Intergenic L1MC5|LINE|L1 -153678 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 728-81 chr6 54930554 54931076 + 3 NA intron (NM_001010872, intron 4 of 4) L1MA4A|LINE|L1 84044 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 556-89 chr18 70900391 70900691 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -249587 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 892-29 chr3 111501918 111502250 + 3 NA Intergenic L1ME1|LINE|L1 -40113 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 426-121 chr19 57963942 57964219 + 3 NA intron (NM_152474, intron 4 of 5) (TGGTTT)n|Simple_repeat|Simple_repeat 10454 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 576-127 chr5 11445496 11445801 + 3 NA intron (NM_001288715, intron 2 of 20) L1MEj|LINE|L1 143269 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 538-25 chr10 34095784 34096176 + 3 NA Intergenic L1M4c|LINE|L1 -323300 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 604-106 chr3 44722469 44722733 + 3 NA 3' UTR (NM_001134442, exon 3 of 3) 3' UTR (NM_001134442, exon 3 of 3) -7005 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 456-108 chr15 68969511 68969703 + 3 NA intron (NM_001184780, intron 1 of 15) L1M4|LINE|L1 39082 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 409-298 chr8 120108886 120109065 + 3 NA Intergenic Intergenic -16127 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 542-206 chr7 93461762 93462133 + 3 NA intron (NM_001164738, intron 6 of 12) intron (NM_001164738, intron 6 of 12) 20908 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 581-90 chr20 54305814 54306163 + 3 NA Intergenic Intergenic 97901 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 436-228 chr5 5766019 5766194 + 3 NA Intergenic Intergenic 343429 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 544-236 chr9 23944635 23944843 + 3 NA Intergenic MER61-int|LTR|ERV1 -94138 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 661-47 chr2 108227059 108227512 + 3 NA Intergenic MER92-int|LTR|ERV1 -9444 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 350-324 chr3 119777566 119777781 + 3 NA Intergenic L1MB4|LINE|L1 -2811 NM_003889 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 569-183 chr8 140070327 140070638 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 30053 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 777-4 chr1 234686834 234687305 + 3 NA Intergenic L1ME1|LINE|L1 -36973 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 624-9 chr1 194133445 194133685 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 828820 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 283-482 chrX 133728784 133728892 + 3 NA intron (NM_001164617, intron 3 of 8) intron (NM_001164617, intron 3 of 8) -168605 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 466-265 chr8 75052714 75052956 + 3 NA Intergenic LTR78|LTR|ERV1 52680 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 351-255 chr20 11687514 11687657 + 3 NA Intergenic Intergenic 183130 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 436-272 chr6 155970880 155971064 + 3 NA Intergenic L2a|LINE|L2 24175 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 533-242 chr9 1671736 1672077 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -343441 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 514-207 chr4 103893924 103894224 + 3 NA Intergenic Intergenic -174089 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 241-192 chr2 116443246 116443421 + 3 NA Intergenic L1MC3|LINE|L1 1099518 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 527-42 chr11 23001789 23002067 + 3 NA Intergenic Intergenic -141454 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 453-267 chr7 121505374 121505563 + 3 NA Intergenic Intergenic -109100 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 401-287 chr6 85811640 85811820 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -132997 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 975-9 chr16 74150399 74150910 + 3 NA Intergenic Intergenic 64867 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 441-152 chr3 26524791 26525003 + 3 NA Intergenic Intergenic -97909 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 377-321 chr5 44103183 44103379 + 3 NA Intergenic Intergenic -285451 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 401-58 chr12 23461332 23461495 + 3 NA Intergenic Intergenic 123173 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 203-217 chr7 32411058 32411155 + 3 NA intron (NM_001322059, intron 1 of 17) L1ME2z|LINE|L1 17118 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 441-159 chr3 78649116 78649275 + 3 NA intron (NM_002941, intron 19 of 30) intron (NM_002941, intron 19 of 30) 370264 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 341-195 chr17 31694557 31694743 + 3 NA Intergenic Intergenic 119239 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 732-39 chr18 71826469 71826882 + 3 NA Intergenic Intergenic -44449 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 500-295 chr8 87265572 87265890 + 3 NA intron (NM_173538, intron 6 of 10) MER58A|DNA|hAT-Charlie 399316 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 402-144 chr2 52176362 52176570 + 3 NA intron (NR_135237, intron 7 of 10) MER57-int|LTR|ERV1 -194182 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 370-156 chr15 46777090 46777341 + 3 NA Intergenic Intergenic -406874 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 964-31 chr8 132068484 132068985 + 3 NA intron (NM_001145095, intron 14 of 15) intron (NM_001145095, intron 14 of 15) -9352 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 308-306 chr3 113971944 113972105 + 3 NA intron (NR_148531, intron 14 of 14) L1MA4|LINE|L1 24011 NM_173570 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 630-106 chr5 59617122 59617377 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -29624 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 566-25 chr11 81741052 81741328 + 3 NA Intergenic Intergenic 149646 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 388-143 chr19 37509531 37509783 + 3 NA intron (NM_001013659, intron 2 of 7) intron (NM_001013659, intron 2 of 7) -2570 NR_110723 101927720 Hs.18070 NR_110723 ENSG00000266916 ZNF793-AS1 - ZNF793 antisense RNA 1 (head to head) ncRNA 463-153 chr2 164626059 164626297 + 3 NA Intergenic L1ME3B|LINE|L1 -4696 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 654-40 chr15 68097695 68098051 + 3 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 43297 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 478-27 chr10 76533689 76533936 + 3 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -354232 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 488-7 chr1 44363442 44363658 + 3 NA Intergenic L2c|LINE|L2 -8271 NM_001301700 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 638-30 chr12 118871177 118871548 + 3 NA Intergenic L1ME1|LINE|L1 -37826 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 563-161 chr6 117720806 117721094 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 45481 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 858-44 chr8 87373780 87374236 + 3 NA intron (NM_173538, intron 10 of 10) intron (NM_173538, intron 10 of 10) 500007 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 759-39 chr2 126837129 126837483 + 3 NA Intergenic Intergenic -61584 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 624-13 chr10 43472085 43472331 + 3 NA intron (NM_001355446, intron 2 of 4) L2|LINE|L2 35097 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 567-139 chr4 178767247 178767612 + 3 NA Intergenic Intergenic -859493 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 1206-12 chr8 24414395 24414938 + 3 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -26360 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 809-35 chr4 89202919 89203379 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 90332 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 604-172 chr9 77125054 77125467 + 3 NA Intergenic Intergenic -52185 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 692-34 chr16 78486087 78486430 + 3 NA intron (NM_001291997, intron 7 of 7) MER63B|DNA|hAT-Blackjack 386604 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 654-50 chr18 60321583 60321886 + 3 NA Intergenic Intergenic 51041 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 231-345 chr8 24102177 24102364 + 3 NA Intergenic Intergenic -191770 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 520-208 chr4 33594096 33594356 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 445667 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 504-56 chr12 110064951 110065129 + 3 NA intron (NR_148514, intron 1 of 3) intron (NR_148514, intron 1 of 3) 2655 NM_207435 400073 Hs.44817 NM_207435 ENSG00000174456 C12orf76 - chromosome 12 open reading frame 76 protein-coding 490-309 chr8 137529658 137529937 + 3 NA Intergenic Intergenic -116209 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 783-38 chr2 79657468 79657973 + 3 NA intron (NM_001282598, intron 2 of 17) L1M5|LINE|L1 -8361 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 438-208 chr5 10046998 10047195 + 3 NA Intergenic Intergenic -143272 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 514-217 chr5 16298016 16298222 + 3 NA Intergenic L1PA13|LINE|L1 117878 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 367-381 chr5 175147437 175147716 + 3 NA Intergenic L1MC3|LINE|L1 -151845 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 290-250 chr20 55283533 55283638 + 3 NA Intergenic Intergenic -139458 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 662-43 chr2 35977547 35977919 + 3 NA Intergenic Intergenic 377837 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 523-129 chr2 49629476 49629864 + 3 NA Intergenic Intergenic 344533 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 629-23 chr10 91656874 91657220 + 3 NA Intergenic Intergenic -23976 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 534-243 chr7 143177553 143177866 + 3 NA intron (NM_001130026, intron 8 of 10) L1MEd|LINE|L1 -5710 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 547-63 chr14 32671739 32672022 + 3 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -266999 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 499-265 chr8 91202687 91202970 + 3 NA intron (NM_001354470, intron 3 of 3) L2a|LINE|L2 -2657 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 967-8 chr16 78804834 78805488 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 705507 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 514-222 chr5 46231383 46231589 + 3 NA Intergenic ALR/Alpha|Satellite|centr -535106 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 369-193 chr2 48304142 48304316 + 3 NA Intergenic Intergenic -10453 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 1100-16 chr6 63314093 63314644 + 3 NA intron (NM_001143940, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR 5609 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 749-19 chr10 106934830 106935309 + 3 NA intron (NM_001206569, intron 2 of 25) L1PB3|LINE|L1 229637 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 652-43 chr15 70593907 70594182 + 3 NA Intergenic L1MEd|LINE|L1 -7438 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 595-171 chr9 30182791 30183124 + 3 NA Intergenic L1PA15|LINE|L1 225497 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 434-227 chr5 81079859 81080046 + 3 NA intron (NM_006909, intron 5 of 26) intron (NM_006909, intron 5 of 26) -119045 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 313-58 chr10 106581912 106582067 + 3 NA intron (NM_001206569, intron 24 of 25) intron (NM_001206569, intron 24 of 25) 441824 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 1019 chr1 57894642 57895275 + 3 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 34377 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 469-179 chr3 82597762 82598015 + 3 NA Intergenic Intergenic 611746 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 518-77 chr14 45573565 45573873 + 3 NA Intergenic Intergenic 141883 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 441-156 chr3 36717491 36717764 + 3 NA intron (NM_033403, intron 4 of 4) intron (NM_033403, intron 4 of 4) 22234 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 292-468 chr9 103775513 103775620 + 3 NA Intergenic L1PB4|LINE|L1 -224143 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 818-9 chr11 67339360 67339855 + 3 NA intron (NR_024469, intron 2 of 3) AluSz6|SINE|Alu 13939 NM_021173 57804 Hs.523829 NM_021173 ENSG00000175482 POLD4 POLDS|p12 DNA polymerase delta 4, accessory subunit protein-coding 249-336 chr5 79170665 79170809 + 3 NA Intergenic L2a|LINE|L2 58928 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 376-197 chr2 130289384 130289564 + 3 NA Intergenic Intergenic 52634 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 514-200 chr4 54479310 54479555 + 3 NA Intergenic L1MEb|LINE|L1 127699 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 677-12 chr10 58009642 58010011 + 3 NA Intergenic Intergenic 258068 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 422-98 chr15 75447095 75447310 + 3 NA intron (NM_001145357, intron 1 of 20) L2a|LINE|L2 4488 NM_015477 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 410-223 chr4 97703419 97703611 + 3 NA intron (NM_174952, intron 10 of 10) (TA)n|Simple_repeat|Simple_repeat 336589 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 555-188 chr7 85999878 86000097 + 3 NA Intergenic Intergenic 578865 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 493-190 chr22 48733266 48733600 + 3 NA intron (NM_001082967, intron 3 of 3) intron (NM_001082967, intron 3 of 3) -46862 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 448-110 chr2 67728838 67729004 + 3 NA Intergenic Intergenic 96641 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 1139 chr1 209873264 209873881 + 3 NA Intergenic Intergenic 45600 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 502-267 chr8 88769030 88769213 + 3 NA Intergenic Intergenic -441638 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 666-83 chr3 173007375 173007626 + 3 NA intron (NM_031955, intron 4 of 10) intron (NM_031955, intron 4 of 10) 133735 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 1102-7 chr19 56523162 56523866 + 3 NA intron (NM_001321768, intron 3 of 3) intron (NM_001321768, intron 3 of 3) -15434 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 464-89 chr17 33545991 33546188 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -12329 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 396-68 chr11 6582869 6583061 + 3 NA Intergenic L1MA3|LINE|L1 20651 NM_015324 23378 Hs.652255 NM_015324 ENSG00000132275 RRP8 KIAA0409|NML ribosomal RNA processing 8 protein-coding 451-41 chr11 112425306 112425582 + 3 NA Intergenic Intergenic -56788 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 503-163 chr2 192247816 192248032 + 3 NA Intergenic Intergenic -52991 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 501-168 chr3 75022058 75022308 + 3 NA Intergenic Intergenic -192293 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 756-48 chr5 174677909 174678381 + 3 NA Intergenic L2b|LINE|L2 -46437 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 719-77 chr8 57638487 57638916 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -107448 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 724-82 chr6 53414701 53415086 + 3 NA Intergenic L2a|LINE|L2 -65714 NM_001242831 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 448-217 chr5 94173064 94173290 + 3 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -61478 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 714-72 chr8 87623142 87623607 + 3 NA Intergenic Intergenic 250641 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 344-67 chr10 125275658 125275794 + 3 NA Intergenic HAL1|LINE|L1 -114696 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 483-239 chr7 36108904 36109171 + 3 NA Intergenic Intergenic 13727 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 736-94 chrX 78342050 78342635 + 3 NA Intergenic L1MD|LINE|L1 -14651 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 635-94 chr6 63141336 63141724 + 3 NA Intergenic L1M1|LINE|L1 178447 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 538-73 chr14 87105646 87106003 + 3 NA Intergenic Intergenic 200046 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 506-233 chr5 98952821 98953172 + 3 NA intron (NR_151718, intron 1 of 3) intron (NR_151718, intron 1 of 3) -23282 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 318-212 chr17 71190460 71190639 + 3 NA intron (NR_104152, intron 1 of 3) intron (NR_104152, intron 1 of 3) 11630 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 298-481 chr8 130654956 130655116 + 3 NA Intergenic L1ME4b|LINE|L1 -211362 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 349 chr1 3238355 3238507 + 3 NA intron (NM_022114, intron 2 of 16) intron (NM_022114, intron 2 of 16) 110456 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 615-50 chr17 71576799 71577174 + 3 NA Intergenic Intergenic -374807 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 604-40 chr12 133113084 133113507 + 3 NA Intergenic Intergenic 17178 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 537-209 chr6 22810387 22810641 + 3 NA Intergenic Intergenic -92590 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 539-111 chr2 75977696 75977964 + 3 NA Intergenic Intergenic -266915 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 468-124 chr18 40678472 40678771 + 3 NA Intergenic Intergenic 612335 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 394-218 chr3 97632686 97632905 + 3 NA intron (NM_001080448, intron 13 of 17) L2b|LINE|L2 -131726 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 1446-2 chr19 43857533 43858236 + 3 NA Intergenic MER1A|DNA|hAT-Charlie 22252 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 451-198 chr6 92448374 92448529 + 3 NA Intergenic L1MEc|LINE|L1 -758023 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 559-19 chr10 118777041 118777371 + 3 NA Intergenic LOR1b|LTR|ERV1 -22236 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 325-52 chr10 22999032 22999238 + 3 NA intron (NM_001282745, intron 11 of 18) L1ME3E|LINE|L1 71082 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 492-144 chr2 205504025 205504189 + 3 NA intron (NM_205863, intron 20 of 21) L1PA4|LINE|L1 -178393 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 318-338 chr22 27205422 27205587 + 3 NA Intergenic Intergenic 17988 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 533-194 chr5 175658475 175658655 + 3 NA intron (NR_160284, intron 1 of 3) CpG 494 NM_001131055 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 519-134 chr20 45233311 45233559 + 3 NA Intergenic MER52C|LTR|ERV1 12062 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 626-89 chr3 3992368 3992652 + 3 NA Intergenic Intergenic -191635 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 811-10 chr12 5941043 5941466 + 3 NA intron (NM_001278597, intron 1 of 25) L1MB7|LINE|L1 4005 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 771-49 chr20 39170003 39170472 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 54511 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 659-10 chr10 41740957 41741444 + 3 NA Intergenic ALR/Alpha|Satellite|centr 626845 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 473-205 chr4 184162582 184162751 + 3 NA intron (NM_153343, intron 1 of 7) intron (NM_153343, intron 1 of 7) 55207 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 469-7 chr1 68709098 68709341 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -212137 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 573-24 chr10 43009241 43009506 + 3 NA Intergenic MER1B|DNA|hAT-Charlie 11810 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 529-225 chr8 134224397 134224621 + 3 NA Intergenic Intergenic 338013 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 427-147 chr22 27693745 27693903 + 3 NA Intergenic AluSq2|SINE|Alu 107932 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 500-14 chr1 196686438 196686650 + 3 NA intron (NM_001014975, intron 7 of 9) intron (NM_001014975, intron 7 of 9) 34666 NM_000186 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 414-16 chr1 152701531 152701731 + 3 NA Intergenic L1ME3B|LINE|L1 3286 NM_178428 353139 Hs.334054 NM_178428 ENSG00000187173 LCE2A LEP9 late cornified envelope 2A protein-coding 619-41 chr14 48354628 48354931 + 3 NA Intergenic Intergenic -559765 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 422-262 chr6 86322068 86322354 + 3 NA Intergenic MER57-int|LTR|ERV1 -615317 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 614-80 chr3 40345245 40345586 + 3 NA Intergenic MER41-int|LTR|ERV1 35708 NM_005875 10289 Hs.315230 NM_005875 ENSG00000114784 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 433-5 chr1 83947658 83947834 + 3 NA intron (NM_001350215, intron 4 of 19) intron (NM_001350215, intron 4 of 19) 51386 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 315-386 chr5 78373324 78373551 + 3 NA intron (NM_001290229, intron 1 of 7) intron (NM_001290229, intron 1 of 7) 12820 NR_110885 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 398-42 chr10 64904624 64904831 + 3 NA intron (NR_134456, intron 1 of 1) intron (NR_134456, intron 1 of 1) 19791 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 465-252 chr6 66917372 66917592 + 3 NA Intergenic Intergenic 1129603 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 545-205 chr6 91393892 91394221 + 3 NA Intergenic Intergenic -127604 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 545-120 chr2 161479973 161480231 + 3 NA Intergenic L1MA5A|LINE|L1 27800 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 509-134 chr21 29282153 29282342 + 3 NA intron (NR_027072, intron 1 of 1) L1MEc|LINE|L1 -16675 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 620-98 chr4 38639132 38639443 + 3 NA intron (NR_026804, intron 1 of 7) Tigger5|DNA|TcMar-Tigger -24912 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 859-35 chr5 137725598 137726004 + 3 NA intron (NM_017415, intron 1 of 14) intron (NM_017415, intron 1 of 14) -4491 NM_001257194 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 591-128 chr5 40413414 40413736 + 3 NA Intergenic Intergenic -266340 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 578-29 chr10 81364706 81365113 + 3 NA Intergenic L1M1|LINE|L1 -510285 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 687-113 chr7 112118146 112118465 + 3 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 88094 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 558-214 chr8 86989727 86990043 + 3 NA intron (NM_173538, intron 4 of 10) L1MA3|LINE|L1 123470 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 463-93 chr14 70218491 70218796 + 3 NA intron (NR_135825, intron 2 of 3) intron (NR_135825, intron 2 of 3) 29158 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 583-143 chr5 171799818 171800244 + 3 NA Intergenic Intergenic 14159 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 445-55 chr12 133015773 133016067 + 3 NA 3' UTR (NM_001330513, exon 5 of 5) 3' UTR (NM_001330513, exon 5 of 5) 21302 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 377-178 chr19 9292200 9292453 + 3 NA 3' UTR (NM_198535, exon 6 of 6) 3' UTR (NM_198535, exon 6 of 6) 17512 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 680-27 chr12 34448299 34448707 + 3 NA Intergenic ALR/Alpha|Satellite|centr 426007 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 515-213 chr5 96236711 96236967 + 3 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 157701 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 562-41 chr11 130903839 130904053 + 3 NA intron (NM_014758, intron 7 of 10) intron (NM_014758, intron 7 of 10) 12541 NM_001347926 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 484-178 chr3 108022164 108022339 + 3 NA Intergenic MER50|LTR|ERV1 68837 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 912-13 chr14 45913204 45913677 + 3 NA Intergenic L1MA9|LINE|L1 -150719 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 1468 chr10 52586684 52587444 + 3 NA intron (NR_155748, intron 1 of 2) L1MA3|LINE|L1 -116531 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 700-98 chr8 125768624 125769133 + 3 NA Intergenic Intergenic 182319 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 430-180 chr21 27506693 27506894 + 3 NA Intergenic Intergenic -215586 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 891-18 chr18 5223740 5224303 + 3 NA Intergenic AluSx|SINE|Alu 14008 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 611-67 chr18 62178465 62178756 + 3 NA intron (NM_176787, intron 1 of 30) FLAM_A|SINE|Alu 8446 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 214-362 chrX 86524943 86525040 + 3 NA intron (NM_001139515, intron 3 of 11) MIRb|SINE|MIR 262023 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 123-18 chr13 65169490 65169561 + 3 NA Intergenic Intergenic -696522 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 449-133 chr2 185623827 185624150 + 3 NA Intergenic Intergenic 114731 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 744-11 chr11 50583733 50584215 + 3 NA Intergenic ALR/Alpha|Satellite|centr 174827 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 520-134 chr19 30753342 30753565 + 3 NA Intergenic Intergenic 381069 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 675-39 chr19 56648693 56649085 + 3 NA intron (NR_163263, intron 4 of 4) intron (NR_163263, intron 4 of 4) 5730 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 449-125 chr2 95190967 95191224 + 3 NA Intergenic Intergenic 25286 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 242-66 chr12 7297496 7297674 + 3 NA Intergenic MER4-int|LTR|ERV1 -6747 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 568-192 chr8 46313601 46313970 + 3 NA Intergenic ALR/Alpha|Satellite|centr 303858 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 468-63 chr12 79798225 79798457 + 3 NA intron (NM_001244990, intron 16 of 24) intron (NM_001244990, intron 16 of 24) -107244 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 378-267 chr22 23579641 23579846 + 3 NA intron (NM_001369906, intron 1 of 2) MER96B|DNA|hAT-Tip100 547 NM_152855 3543 Hs.348935 NM_020070 ENSG00000128322 IGLL1 14.1|AGM2|CD179b|IGL1|IGL5|IGLJ14.1|IGLL|IGO|IGVPB|VPREB2 immunoglobulin lambda like polypeptide 1 protein-coding 594-8 chr1 162415858 162416135 + 3 NA Intergenic Intergenic -3860 NM_053282 117157 Hs.350581 NM_053282 ENSG00000198574 SH2D1B EAT2 SH2 domain containing 1B protein-coding 431-209 chr4 103523842 103524085 + 3 NA Intergenic L1MB3|LINE|L1 98921 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 740-26 chr13 111242520 111242901 + 3 NA intron (NM_001354055, intron 1 of 16) MIRc|SINE|MIR 1536 NM_001354055 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 808-10 chr11 83996096 83996629 + 3 NA intron (NM_001142699, intron 11 of 27) L1MA1|LINE|L1 276918 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 328-596 chr8 142310047 142310227 + 3 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 93045 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 474-90 chr15 23488850 23489056 + 3 NA Intergenic AluJr|SINE|Alu -41710 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 466-3 chr1 70882803 70883089 + 3 NA intron (NR_028293, intron 2 of 4) L1PB4|LINE|L1 -163560 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 563-191 chr9 32668258 32668586 + 3 NA Intergenic MER30|DNA|hAT-Charlie -32753 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 311-207 chr18 3764337 3764527 + 3 NA intron (NM_001242762, intron 2 of 9) L3|LINE|CR1 80926 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 439-96 chr15 26419394 26419575 + 3 NA Intergenic L1PREC2|LINE|L1 209606 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 395-27 chr1 240374914 240375145 + 3 NA intron (NM_020066, intron 14 of 17) Tigger1|DNA|TcMar-Tigger 237126 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 512-19 chr1 196630353 196630581 + 3 NA Intergenic L1MEd|LINE|L1 -21411 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 459-262 chr6 77022718 77022918 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -429195 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 290-352 chr5 95157394 95157547 + 3 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -75604 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 291-186 chr18 9780964 9781137 + 3 NA intron (NM_006868, intron 2 of 6) L1ME4a|LINE|L1 72749 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 719-15 chr12 20159662 20160120 + 3 NA Intergenic L3|LINE|CR1 -31990 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 682-71 chr4 42367061 42367559 + 3 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 23958 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 458-192 chr4 123043153 123043356 + 3 NA intron (NM_001345856, intron 11 of 15) L1MEf|LINE|L1 120176 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 216-181 chr2 148016406 148016534 + 3 NA intron (NM_001190879, intron 1 of 14) HSMAR1|DNA|TcMar-Mariner 4267 NM_001190882 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 326-227 chr2 13316138 13316301 + 3 NA Intergenic Intergenic -309206 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 405-48 chr11 78707503 78707699 + 3 NA intron (NM_001098816, intron 27 of 33) L2c|LINE|L2 -132737 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 561-209 chr8 121343527 121343841 + 3 NA Intergenic L2b|LINE|L2 -295662 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 278-315 chr4 81496055 81496206 + 3 NA Intergenic Intergenic -24223 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 525-256 chr8 71131316 71131514 + 3 NA Intergenic Intergenic 225291 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 461-223 chr5 127719887 127720145 + 3 NA intron (NM_001317938, intron 2 of 6) MSTA-int|LTR|ERVL-MaLR 16627 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 302-209 chr2 56774178 56774302 + 3 NA Intergenic Intergenic -588470 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 638-170 chr9 78924382 78924682 + 3 NA Intergenic MER89-int|LTR|ERV1 221134 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 675 chr1 14042045 14042540 + 3 NA Intergenic HAL1|LINE|L1 292877 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 899-26 chr6 61500230 61500797 + 3 NA Intergenic ALR/Alpha|Satellite|centr -73617 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 646-29 chr12 23166802 23167161 + 3 NA Intergenic Intergenic -8655 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 545-257 chrX 77026347 77026624 + 3 NA Intergenic Intergenic -11953 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 1088-15 chrX 96169962 96170521 + 3 NA Intergenic Intergenic 167661 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 546-130 chr21 21692024 21692356 + 3 NA Intergenic MIR3|SINE|MIR 45129 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 442-22 chr10 23242320 23242677 + 3 NA intron (NM_001365862, intron 12 of 15) L1MEg|LINE|L1 50186 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 484-138 chr2 132762438 132762641 + 3 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -91013 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 509-13 chr1 174545465 174545653 + 3 NA 3' UTR (NM_001366449, exon 7 of 7) 3' UTR (NM_001366449, exon 7 of 7) 97595 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 651-20 chr10 90854696 90854954 + 3 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 3214 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 473-30 chr10 56582389 56582737 + 3 NA Intergenic Intergenic -221290 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 561-38 chr11 85383911 85384214 + 3 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 243208 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 889-6 chr11 104358022 104358386 + 3 NA Intergenic Intergenic -194057 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 493-179 chr20 39577623 39577861 + 3 NA Intergenic Intergenic -352994 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 517-184 chr3 177765399 177765589 + 3 NA Intergenic Intergenic -51371 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 410-103 chr16 52538451 52538701 + 3 NA intron (NM_001146188, intron 1 of 7) intron (NM_001146188, intron 1 of 7) 8567 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 478-253 chr6 68794626 68794798 + 3 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 159430 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 449-189 chr4 72277150 72277325 + 3 NA Intergenic Intergenic 238105 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 577-117 chr3 49236018 49236409 + 3 NA intron (NM_001135197, intron 2 of 7) AluSx|SINE|Alu 36715 NM_001135197 339834 Hs.631931 NM_178173 ENSG00000173421 CCDC36 CT74 coiled-coil domain containing 36 protein-coding 201-73 chr13 94672584 94672688 + 3 NA Intergenic Intergenic 35850 NR_120417 101927248 NR_120417 LOC101927248 - uncharacterized LOC101927248 ncRNA 337-272 chr2 137447962 137448160 + 3 NA intron (NM_001316349, intron 14 of 27) L2|LINE|L2 479871 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 712-48 chr2 189954468 189954845 + 3 NA Intergenic Intergenic 108073 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 442-28 chr10 65230458 65230685 + 3 NA Intergenic (ATTAT)n|Simple_repeat|Simple_repeat -306053 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 540-16 chr1 112897011 112897220 + 3 NA Intergenic MER31-int|LTR|ERV1 15065 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 491-80 chr16 13785023 13785231 + 3 NA Intergenic MIR3|SINE|MIR -135030 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 346-121 chr13 77064523 77064736 + 3 NA exon (NM_015057, exon 73 of 83) exon (NM_015057, exon 73 of 83) -10885 NR_046716 100874212 Hs.569288 NR_046716 ENSG00000236051 MYCBP2-AS1 - MYCBP2 antisense RNA 1 ncRNA 364-160 chr16 77378253 77378374 + 3 NA intron (NM_199355, intron 3 of 22) AluJo|SINE|Alu 56721 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 470-23 chr10 49778437 49778630 + 3 NA Intergenic L1ME3|LINE|L1 -16154 NM_001347820 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 694-73 chr20 6364873 6365305 + 3 NA Intergenic L1M5|LINE|L1 -61643 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 606-90 chr2 160825016 160825349 + 3 NA Intergenic L1MA5|LINE|L1 -311773 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 514-290 chr8 133956507 133956786 + 3 NA Intergenic Intergenic 70150 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 289-124 chr12 126169131 126169310 + 3 NA Intergenic Intergenic 73228 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 638-75 chr2 146706092 146706415 + 3 NA Intergenic L1MA1|LINE|L1 119196 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 536-66 chr13 57544982 57545185 + 3 NA Intergenic LTR16A2|LTR|ERVL -86661 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 364-199 chr2 22635197 22635380 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie 98809 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 353-231 chr2 4567095 4567373 + 3 NA Intergenic L1MA3|LINE|L1 88988 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 587-50 chr15 26252380 26252747 + 3 NA Intergenic L1MB3|LINE|L1 136750 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 584-89 chr21 26300800 26301151 + 3 NA Intergenic Tigger6a|DNA|TcMar-Tigger -92660 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 467-91 chr15 80369319 80369502 + 3 NA Intergenic LTR8|LTR|ERV1 -27605 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 704-45 chr2 138878865 138879337 + 3 NA Intergenic Intergenic -18223 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 402-300 chr6 81314145 81314365 + 3 NA Intergenic L1M3de|LINE|L1 438426 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 613-40 chr16 83029036 83029484 + 3 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) -38962 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 561-83 chr18 10120288 10120562 + 3 NA Intergenic L1MA7|LINE|L1 206409 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 396-187 chr20 9416973 9417141 + 3 NA intron (NM_000933, intron 21 of 35) intron (NM_000933, intron 21 of 35) -97301 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 566-100 chr2 155680277 155680667 + 3 NA Intergenic Intergenic 574459 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 416-238 chr3 189646151 189646306 + 3 NA intron (NM_003722, intron 1 of 13) MER5A|DNA|hAT-Charlie 14839 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 564-82 chr18 52881857 52882106 + 3 NA intron (NM_005215, intron 2 of 28) L1MA2|LINE|L1 -355120 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 707-21 chr14 36609862 36610381 + 3 NA Intergenic L1MB5|LINE|L1 -27507 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 346-342 chr4 23750823 23751029 + 3 NA Intergenic LTR33|LTR|ERVL 130366 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 313-102 chr12 13120509 13120740 + 3 NA Intergenic Intergenic -16957 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 761-49 chr4 32425398 32425839 + 3 NA Intergenic Ricksha_0|DNA|MULE-MuDR 74580 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 718-80 chr6 42712231 42712698 + 3 NA intron (NM_000322, intron 1 of 2) L1MC5a|LINE|L1 10133 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 542-68 chr15 76626903 76627127 + 3 NA intron (NR_148227, intron 21 of 32) intron (NR_148227, intron 21 of 32) 40368 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 494-58 chr13 69607184 69607566 + 3 NA Intergenic AluSx3|SINE|Alu 385029 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 293-371 chr6 66718502 66718698 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 930721 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 349-193 chr16 25428811 25428958 + 3 NA Intergenic Charlie21a|DNA|hAT-Charlie -171039 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 640-124 chr7 54519066 54519435 + 3 NA Intergenic L1M4|LINE|L1 -23075 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 410-231 chr5 8035213 8035466 + 3 NA Intergenic Intergenic 166191 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 572-23 chr11 41847449 41847712 + 3 NA Intergenic Intergenic 133012 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 339-601 chr9 1662445 1662603 + 3 NA Intergenic Intergenic -352823 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 504-268 chr8 131277072 131277293 + 3 NA Intergenic Intergenic -236273 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 342-474 chr7 8474074 8474294 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 40575 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 306-27 chr1 119519572 119519717 + 3 NA Intergenic Intergenic 12434 NM_000862 3283 Hs.364941 NM_000862 ENSG00000203857 HSD3B1 3BETAHSD|HSD3B|HSDB3|HSDB3A|SDR11E1 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 protein-coding 328-401 chr4 62739989 62740196 + 3 NA Intergenic Intergenic -578327 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 382-291 chr4 34503884 34504086 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -234238 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 494-212 chr4 155301476 155301687 + 3 NA Intergenic Intergenic -52635 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 576-93 chr2 172343081 172343350 + 3 NA Intergenic Intergenic -84121 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 788 chr1 165272755 165273298 + 3 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 83215 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 702-52 chr20 15002407 15002800 + 3 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -73085 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 929-19 chr2 18887757 18888241 + 3 NA Intergenic AluJb|SINE|Alu 138972 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 490-15 chr1 104577615 104577865 + 3 NA Intergenic L1MEc|LINE|L1 504717 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 543-229 chr7 56246923 56247257 + 3 NA Intergenic L1M5|LINE|L1 -130673 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 801-28 chr2 45830376 45830783 + 3 NA intron (NM_005400, intron 1 of 14) HAL1ME|LINE|L1 178904 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 622-72 chr2 213651795 213652149 + 3 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -106095 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 531-238 chr8 52805481 52805719 + 3 NA Intergenic Intergenic -91134 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 505-43 chr10 130913589 130913828 + 3 NA Intergenic Intergenic 48960 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 470-182 chr3 122493490 122493708 + 3 NA intron (NR_026698, intron 2 of 14) intron (NR_026698, intron 2 of 14) 21340 NM_002264 3836 Hs.161008 NM_002264 ENSG00000114030 KPNA1 IPOA5|NPI-1|RCH2|SRP1 karyopherin subunit alpha 1 protein-coding 560-129 chr4 127330752 127331052 + 3 NA Intergenic Intergenic -302055 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 807-10 chr11 112386172 112386599 + 3 NA Intergenic L1ME1|LINE|L1 -95847 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 471-65 chr12 38557943 38558257 + 3 NA Intergenic (TTAA)n|Simple_repeat|Simple_repeat 241326 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 778-7 chr10 10065469 10065773 + 3 NA Intergenic Intergenic 6899 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 638-49 chr15 87681152 87681376 + 3 NA Intergenic (AAGCAGG)n|Simple_repeat|Simple_repeat 104335 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 489-269 chr9 84614776 84615048 + 3 NA Intergenic Intergenic -53546 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 391-273 chr5 2553118 2553344 + 3 NA Intergenic L1ME2|LINE|L1 -159360 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 436-104 chr16 82568471 82568742 + 3 NA Intergenic Intergenic -58363 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 699-26 chr13 30894153 30894504 + 3 NA intron (NR_038287, intron 2 of 3) intron (NR_038287, intron 2 of 3) 11766 NR_103813 440132 Hs.729493 NR_103813 ENSG00000236094 LINC00545 - long intergenic non-protein coding RNA 545 ncRNA 517-147 chr2 166660925 166661255 + 3 NA Intergenic Intergenic -174119 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 489-183 chr4 12015235 12015480 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie -208094 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 509-66 chr13 66093206 66093514 + 3 NA Intergenic L1MEd|LINE|L1 -124890 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 519-161 chr4 55345411 55345789 + 3 NA promoter-TSS (NM_024592) promoter-TSS (NM_024592) -642 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 446-248 chr5 109449103 109449411 + 3 NA Intergenic L1M5|LINE|L1 -39283 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 510-93 chr16 7911291 7911597 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger 578599 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 570-178 chr7 51998136 51998617 + 3 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -605120 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 773-51 chr8 139750838 139751280 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -47936 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 507-213 chr6 40045359 40045685 + 3 NA Intergenic L1MB3|LINE|L1 -111060 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 505-110 chr16 79604214 79604412 + 3 NA Intergenic Intergenic -3576 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 630-102 chr4 188027456 188027706 + 3 NA Intergenic L2a|LINE|L2 31810 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 181-151 chr7 133451610 133451728 + 3 NA intron (NM_021807, intron 7 of 17) intron (NM_021807, intron 7 of 17) 160788 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 517-81 chr14 70986753 70986955 + 3 NA intron (NM_001308160, intron 6 of 33) intron (NM_001308160, intron 6 of 33) 79395 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 381-168 chr19 43971607 43971779 + 3 NA Intergenic L1PA11|LINE|L1 -12477 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 748-40 chr17 58920054 58920547 + 3 NA intron (NM_014906, intron 1 of 6) L2|LINE|L2 164431 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 585-39 chr14 62361377 62361739 + 3 NA Intergenic LTR53B|LTR|ERVL -221585 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 419-252 chr6 51251404 51251546 + 3 NA Intergenic Intergenic -370395 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 513-161 chr20 42279348 42279542 + 3 NA intron (NM_133170, intron 13 of 31) MLT1C|LTR|ERVL-MaLR -406038 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 529-239 chr9 115949455 115949651 + 3 NA Intergenic Intergenic -24346 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 930-25 chr5 42148756 42149299 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 26318 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 1006-9 chr14 34270371 34270984 + 3 NA Intergenic Intergenic 191563 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 670-113 chr7 81902368 81902823 + 3 NA Intergenic L1PB2|LINE|L1 -106582 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 573-147 chr5 84522529 84522857 + 3 NA Intergenic MamRep1151|LTR?|LTR? -137813 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 773-28 chr4 15165546 15165927 + 3 NA intron (NR_125911, intron 2 of 5) L1MD2|LINE|L1 163255 NM_182485 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 504-261 chr8 106219419 106219645 + 3 NA Intergenic Intergenic -50646 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 405-235 chr4 126382464 126382658 + 3 NA Intergenic L1MEh|LINE|L1 875302 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 534-114 chr2 76515208 76515472 + 3 NA Intergenic Intergenic -470625 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 520-276 chr7 33588761 33589018 + 3 NA intron (NR_145411, intron 22 of 23) L2a|LINE|L2 -316026 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 514-298 chr9 89323222 89323530 + 3 NA intron (NM_001282689, intron 2 of 16) intron (NM_001282689, intron 2 of 16) 4525 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 539-196 chr7 106157131 106157339 + 3 NA Intergenic L1MEd|LINE|L1 -44659 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 769-20 chr15 81464213 81464587 + 3 NA Intergenic L1M2|LINE|L1 -90187 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 269-137 chr15 79918658 79918800 + 3 NA intron (NR_037653, intron 1 of 2) HERVIP10FH-int|LTR|ERV1 -4042 NR_028330 283687 Hs.722219 NM_175898 ST20-AS1 C15orf37 ST20 antisense RNA 1 ncRNA 512-179 chr4 12084282 12084618 + 3 NA Intergenic MIR|SINE|MIR -139001 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 279-159 chr2 6690998 6691184 + 3 NA Intergenic Intergenic -40572 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 1273-11 chr8 107153716 107154431 + 3 NA Intergenic Intergenic 182442 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 500-115 chr19 9574196 9574365 + 3 NA intron (NM_001308269, intron 1 of 4) AluSc8|SINE|Alu 10224 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 533-214 chr7 33599632 33599978 + 3 NA intron (NR_145411, intron 22 of 23) Tigger16b|DNA|TcMar-Tigger -305110 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 508-106 chr2 102549214 102549447 + 3 NA Intergenic L1M4|LINE|L1 -70223 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 578-109 chr3 29037601 29037981 + 3 NA Intergenic L1MDa|LINE|L1 243148 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 1052-26 chrX 57722868 57723473 + 3 NA Intergenic L1PA13|LINE|L1 -42910 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 578-18 chr1 227989228 227989584 + 3 NA Intergenic L1M4|LINE|L1 -17592 NM_033131 89780 Hs.336930 NM_033131 ENSG00000154342 WNT3A - Wnt family member 3A protein-coding 563-27 chr10 130414205 130414478 + 3 NA Intergenic L1MEc|LINE|L1 277932 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 430-200 chr3 130840848 130841046 + 3 NA Intergenic Intergenic -9648 NM_001199180 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 274-179 chr18 69791930 69792059 + 3 NA intron (NM_152721, intron 7 of 7) L1MA3|LINE|L1 155879 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 403-252 chr5 86860338 86860514 + 3 NA Intergenic Intergenic 113608 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 428-264 chr6 162328877 162329052 + 3 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -398168 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 477-169 chr2 175430888 175431066 + 3 NA Intergenic Intergenic -249267 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 844-34 chr2 76795157 76795785 + 3 NA intron (NR_146416, intron 1 of 1) MER2|DNA|TcMar-Tigger -190494 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 383-7 chr1 66878066 66878282 + 3 NA intron (NM_024763, intron 4 of 16) L1MC3|LINE|L1 46682 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 715-73 chr5 171030565 171030915 + 3 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) 168722 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 426-186 chr3 103854700 103854954 + 3 NA Intergenic L1MA1|LINE|L1 -330711 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 915-33 chrX 51244404 51244898 + 3 NA Intergenic L1MA9|LINE|L1 -73230 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 496-90 chr14 78534518 78534805 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 130942 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 388-39 chr10 39123294 39123485 + 3 NA Intergenic ALR/Alpha|Satellite|centr 426793 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 393-322 chr7 9076608 9076866 + 3 NA Intergenic (TCATA)n|Simple_repeat|Simple_repeat -557533 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 331-108 chr12 13486754 13486876 + 3 NA Intergenic Intergenic -110070 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 534-135 chr2 188226508 188226830 + 3 NA intron (NR_126396, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 61022 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 578-64 chr15 100301024 100301330 + 3 NA intron (NM_139057, intron 3 of 21) intron (NM_139057, intron 3 of 21) 40798 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 940-31 chr5 165529998 165530668 + 3 NA Intergenic Intergenic 1060054 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 455-226 chr5 92098460 92098670 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie -715248 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 562-13 chr1 203095768 203096029 + 3 NA Intergenic L1MEc|LINE|L1 -9886 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 430-294 chr7 95202956 95203144 + 3 NA intron (NM_017650, intron 6 of 15) intron (NM_017650, intron 6 of 15) 121482 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 278-386 chr6 162333478 162333606 + 3 NA intron (NM_004562, intron 2 of 11) Tigger1|DNA|TcMar-Tigger -393590 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 261-352 chr7 48026384 48026476 + 3 NA intron (NM_001030019, intron 1 of 9) L1ME3A|LINE|L1 2677 NM_152782 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 570-94 chr17 63777118 63777438 + 3 NA intron (NM_007372, intron 2 of 18) intron (NM_007372, intron 2 of 18) 3089 NM_007372 11325 Hs.702010 NM_007372 ENSG00000198231 DDX42 DDX42P|RHELP|RNAHP|SF3B8|SF3b125 DEAD-box helicase 42 protein-coding 471-107 chr17 63061658 63061850 + 3 NA intron (NM_025185, intron 2 of 25) HAL1M8|LINE|L1 95519 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 237-378 chr8 88867296 88867488 + 3 NA Intergenic L1M2|LINE|L1 -539909 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 402-283 chr5 121919823 121920044 + 3 NA Intergenic Intergenic -42042 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 488-246 chr6 146373412 146373621 + 3 NA intron (NM_001278065, intron 6 of 9) MSTA|LTR|ERVL-MaLR -170317 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 800-10 chr10 29166474 29166930 + 3 NA Intergenic L1MEc|LINE|L1 -122368 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 367-95 chr12 100847253 100847434 + 3 NA intron (NM_001286615, intron 1 of 27) intron (NM_001286615, intron 1 of 27) 52567 NM_178826 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 417-311 chrX 4650083 4650285 + 3 NA Intergenic Intergenic -16612 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 804-11 chr11 110218723 110219246 + 3 NA intron (NM_001260493, intron 14 of 15) L2a|LINE|L2 77728 NM_001260494 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 610-117 chr3 111259006 111259359 + 3 NA Intergenic L1MB2|LINE|L1 187366 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 549-161 chr5 28676907 28677120 + 3 NA Intergenic L1M5|LINE|L1 -249857 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 568-105 chr2 67512600 67512953 + 3 NA Intergenic Intergenic 115443 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 593-54 chr16 79002409 79002703 + 3 NA intron (NM_001291997, intron 7 of 7) MER53|DNA|hAT 598181 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 485-113 chr18 75719694 75719978 + 3 NA Intergenic Intergenic -7433 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 431-25 chr1 192889762 192890141 + 3 NA Intergenic Intergenic 58306 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 450-38 chr10 111956393 111956664 + 3 NA Intergenic L1PA7|LINE|L1 227237 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 152-71 chr4 53377354 53377457 + 3 NA promoter-TSS (NM_030917) promoter-TSS (NM_030917) -236 NM_030917 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 449-156 chr21 38886926 38887212 + 3 NA intron (NR_120405, intron 3 of 3) LTR49-int|LTR|ERV1 29530 NR_109926 101928398 Hs.122403 NR_109926 LOC101928398 - uncharacterized LOC101928398 ncRNA 431-6 chr1 37252927 37253133 + 3 NA Intergenic MIRb|SINE|MIR 91467 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 580-63 chr16 75182085 75182414 + 3 NA Intergenic L1MA8|LINE|L1 24912 NM_001025200 440387 Hs.610926 NM_001025200 ENSG00000168928 CTRB2 - chymotrypsinogen B2 protein-coding 591-171 chr8 138378096 138378300 + 3 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 119063 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 649-17 chr11 99337879 99338389 + 3 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -218011 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 626-86 chr22 34976807 34977158 + 3 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 20934 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 623-75 chr20 42019221 42019538 + 3 NA Intergenic MIR1_Amn|SINE|MIR -401002 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 496-286 chr8 87043429 87043701 + 3 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 177150 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 424-7 chr1 106317456 106317621 + 3 NA Intergenic Intergenic -289285 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 404-100 chr14 63718270 63718457 + 3 NA intron (NM_030791, intron 1 of 2).2 L1MEc|LINE|L1 9702 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 606-112 chr4 34376444 34376664 + 3 NA Intergenic Intergenic -106807 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 555-74 chr19 22744662 22744960 + 3 NA Intergenic Intergenic 39340 NM_001080409 7652 Hs.737077 NM_001080409 ENSG00000213973 ZNF99 C19orf9|F8281 zinc finger protein 99 protein-coding 587-126 chr4 153879475 153879852 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -90580 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 470-289 chr9 94041818 94042037 + 3 NA intron (NM_177995, intron 1 of 9) L1MC3|LINE|L1 11114 NM_177995 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 241-200 chr2 142338643 142338741 + 3 NA Intergenic Intergenic -206991 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 452-70 chr13 81996031 81996283 + 3 NA Intergenic Intergenic -769174 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 312-525 chr8 105154576 105154730 + 3 NA Intergenic Intergenic -163785 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 413-64 chr12 27011668 27011902 + 3 NA intron (NM_016551, intron 1 of 11) intron (NM_016551, intron 1 of 11) 2599 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 524-16 chr1 189311727 189311964 + 3 NA Intergenic MER34|LTR|ERV1 1164165 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 447-306 chrX 84652447 84652628 + 3 NA Intergenic L1MA1|LINE|L1 -150084 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 509-29 chr10 108017659 108018078 + 3 NA intron (NR_125760, intron 4 of 4) L1M4c|LINE|L1 51425 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 518-178 chr3 84197975 84198272 + 3 NA Intergenic L1M2|LINE|L1 671452 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 745-46 chr4 49051474 49051776 + 3 NA intron (NM_001286791, intron 15 of 15) AluSx|SINE|Alu 64983 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 442-3 chr1 39556502 39556702 + 3 NA non-coding (NR_003929, exon 2 of 9) non-coding (NR_003929, exon 2 of 9) 3096 NR_003929 728448 Hs.472508 NR_003929 ENSG00000243970 PPIEL PPIEP1 peptidylprolyl isomerase E like pseudogene pseudo 642-76 chr3 193425252 193425564 + 3 NA intron (NM_032279, intron 25 of 29) L1MA6|LINE|L1 -46655 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 703-64 chr4 27876263 27876755 + 3 NA Intergenic Intergenic 659030 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 436-285 chr7 45602583 45602788 + 3 NA intron (NM_001281768, intron 3 of 9) intron (NM_001281768, intron 3 of 9) 28317 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 563-156 chr5 150951476 150951821 + 3 NA Intergenic Intergenic -5064 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 853-43 chr8 127343613 127344132 + 3 NA intron (NR_117099, intron 3 of 3) MER58A|DNA|hAT-Charlie -56527 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 672-124 chrX 88407274 88407803 + 3 NA Intergenic Intergenic -339687 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 721-87 chr8 144544864 144545246 + 3 NA intron (NM_025251, intron 5 of 10) intron (NM_025251, intron 5 of 10) -15944 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 594-62 chr2 4208380 4208753 + 3 NA Intergenic L1M5|LINE|L1 234405 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 596-85 chr2 15874230 15874521 + 3 NA Intergenic Intergenic -46024 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 750-42 chr20 23230893 23231269 + 3 NA Intergenic Intergenic -98445 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 378-7 chr1 56391792 56391957 + 3 NA Intergenic Intergenic -23089 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 272-96 chr12 65267843 65267982 + 3 NA Intergenic Intergenic -10771 NM_001031679 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 659-29 chr13 54622388 54622794 + 3 NA Intergenic L2|LINE|L2 -310543 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 723-61 chr5 99610186 99610703 + 3 NA Intergenic L1M5|LINE|L1 76454 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 405-357 chrX 81479525 81479792 + 3 NA Intergenic L1PA13|LINE|L1 277556 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 483-87 chr16 83763437 83763747 + 3 NA intron (NM_001220489, intron 10 of 12) intron (NM_001220489, intron 10 of 12) 40384 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 463-120 chr19 6462024 6462277 + 3 NA Intergenic Intergenic -1627 NM_174882 92359 Hs.150319 NM_139161 ENSG00000130545 CRB3 - crumbs cell polarity complex component 3 protein-coding 447-251 chr7 97267865 97268086 + 3 NA Intergenic Intergenic 151382 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 362-216 chr2 79660694 79660919 + 3 NA intron (NM_001282598, intron 2 of 17) Charlie29a|DNA|hAT-Charlie -11447 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 312-518 chr8 89730983 89731155 + 3 NA intron (NR_125822, intron 1 of 4) L1M1|LINE|L1 26642 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 895-2 chr1 201341586 201342035 + 3 NA Intergenic L1MEf|LINE|L1 35870 NM_001001430 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 454-56 chr11 83417325 83417527 + 3 NA Intergenic L1PA15|LINE|L1 -131019 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 217-259 chr4 62221325 62221427 + 3 NA Intergenic Intergenic -59611 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 376-418 chr8 142143316 142143483 + 3 NA Intergenic Intergenic -32940 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 452-279 chr8 134143993 134144188 + 3 NA Intergenic Intergenic 257594 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 447-24 chr10 51720876 51721089 + 3 NA intron (NM_001098512, intron 3 of 17) AluJb|SINE|Alu -21387 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 527-222 chr6 70713644 70713943 + 3 NA intron (NM_001281440, intron 1 of 10) L1MA9|LINE|L1 45263 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 525-63 chr12 130692210 130692425 + 3 NA intron (NM_001351226, intron 1 of 21) intron (NM_001351226, intron 1 of 21) 23982 NM_001351226 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 543-242 chr8 14980432 14980686 + 3 NA intron (NM_139167, intron 1 of 7) THE1B|LTR|ERVL-MaLR -127049 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 651-77 chr21 30043687 30044000 + 3 NA Intergenic L1M4|LINE|L1 -103791 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 453-213 chr5 126399383 126399587 + 3 NA intron (NM_001146319, intron 1 of 13) THE1D|LTR|ERVL-MaLR -23661 NM_001146320 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 263-276 chr4 17288006 17288164 + 3 NA Intergenic Intergenic 32797 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 837-37 chr5 121768222 121768842 + 3 NA Intergenic Intergenic -83350 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 523-291 chrX 81132380 81132608 + 3 NA intron (NM_030763, intron 1 of 6) L1PA13|LINE|L1 69419 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 531-108 chr2 48033803 48034188 + 3 NA Intergenic L1MD1|LINE|L1 -128202 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 234-378 chr8 5724242 5724363 + 3 NA Intergenic MIRc|SINE|MIR 682246 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 444-54 chr12 63186336 63186505 + 3 NA Intergenic Intergenic -33610 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 1397-2 chr4 53831476 53832425 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 136049 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 866-39 chr5 125051117 125051625 + 3 NA intron (NR_109882, intron 2 of 5) LTR40a|LTR|ERVL 14540 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 643-109 chr6 140364367 140364758 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 159310 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 577-77 chr18 384970 385237 + 3 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 115598 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 687-89 chr5 26254157 26254520 + 3 NA Intergenic L1PB4|LINE|L1 784248 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 445-235 chr6 71703540 71703735 + 3 NA Intergenic L1MC4a|LINE|L1 -183066 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 408-271 chr5 104682150 104682378 + 3 NA Intergenic L1PB1|LINE|L1 -417210 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 592-17 chr10 94823025 94823306 + 3 NA intron (NM_000769, intron 6 of 8) intron (NM_000769, intron 6 of 8) 60484 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 438-254 chr7 29006732 29006994 + 3 NA intron (NR_038965, intron 4 of 4) intron (NR_038965, intron 4 of 4) 26896 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 496-55 chr12 42906727 42906947 + 3 NA Intergenic Intergenic 214621 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 596-139 chr5 172521595 172521870 + 3 NA Intergenic L1MEg|LINE|L1 37282 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 379-251 chr4 162235813 162235976 + 3 NA Intergenic Intergenic -71860 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 292-455 chr9 3911403 3911557 + 3 NA intron (NM_001042413, intron 6 of 10) intron (NM_001042413, intron 6 of 10) 12834 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 625-18 chr10 116906424 116906796 + 3 NA intron (NM_001127211, intron 15 of 16) L3|LINE|CR1 -56888 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 436-4 chr1 42712952 42713203 + 3 NA Intergenic L1MA4A|LINE|L1 27159 NM_148960 149461 Hs.496270 NM_148960 ENSG00000164007 CLDN19 HOMG5 claudin 19 protein-coding 389-251 chr3 196983125 196983344 + 3 NA Intergenic Intergenic -14401 NM_025163 80235 Hs.518403 NM_025163 ENSG00000119227 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis class Z protein-coding 330-329 chr21 29186811 29186954 + 3 NA Intergenic Intergenic -6612 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 499-106 chr19 57114661 57114936 + 3 NA Intergenic Intergenic -5343 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 348-114 chr12 55418664 55418871 + 3 NA Intergenic L1PA14|LINE|L1 -7487 NM_001005183 390326 Hs.553764 NM_001005183 ENSG00000185821 OR6C76 - olfactory receptor family 6 subfamily C member 76 protein-coding 884-12 chr16 8601105 8601605 + 3 NA Intergenic Intergenic -10844 NM_001290097 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 988-34 chr7 36575741 36576307 + 3 NA intron (NM_001177507, intron 12 of 19) intron (NM_001177507, intron 12 of 19) 24096 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 469-250 chr6 141963808 141964064 + 3 NA Intergenic L3b|LINE|CR1 124863 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 389-49 chr10 120670315 120670523 + 3 NA Intergenic Intergenic 72470 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 707-28 chr14 84472395 84472722 + 3 NA Intergenic Intergenic -799374 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 225-148 chr2 40853437 40853550 + 3 NA Intergenic LTR89|LTR|ERVL? -341058 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 525-114 chr2 34222522 34222819 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 155444 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 605-9 chr1 221368468 221368719 + 3 NA Intergenic L1MDa|LINE|L1 -32297 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 718-4 chr1 78973144 78973430 + 3 NA intron (NM_022159, intron 2 of 14) intron (NM_022159, intron 2 of 14) 33443 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 442-16 chr1 146894027 146894296 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -44384 NM_001278141 149013 Hs.666981 NM_001278141 ENSG00000268043 NBPF12 COAS1|KIAA1245 NBPF member 12 protein-coding 508-265 chrX 65184307 65184486 + 3 NA Intergenic MIRc|SINE|MIR -149655 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 1051-16 chr6 104474438 104474877 + 3 NA Intergenic L3b|LINE|CR1 384889 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 508-236 chr8 91922845 91923044 + 3 NA Intergenic Intergenic 94736 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 227-355 chr7 83536194 83536349 + 3 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 105160 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 756-42 chr3 97923228 97923570 + 3 NA intron (NM_153605, intron 17 of 21) intron (NM_153605, intron 17 of 21) 49032 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 837-23 chr20 39386556 39387045 + 3 NA Intergenic L1MA9|LINE|L1 -162052 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 837-26 chr3 44193784 44194240 + 3 NA Intergenic L1MEf|LINE|L1 -47874 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 613-91 chr4 30702711 30702996 + 3 NA Intergenic Intergenic -17516 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 648-84 chr3 35435781 35436138 + 3 NA Intergenic L1MC2|LINE|L1 -41936 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 589-104 chr4 44472635 44472963 + 3 NA Intergenic L2|LINE|L2 -23990 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 339-567 chr8 72737302 72737473 + 3 NA intron (NR_110656, intron 1 of 2) intron (NR_110656, intron 1 of 2) 5342 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 539-149 chr3 133557926 133558286 + 3 NA Intergenic Intergenic -15580 NM_001282762 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 847-23 chr19 352954 353303 + 3 NA Intergenic Intergenic -8287 NM_001346105 54531 Hs.101891 NM_017550 ENSG00000105556 MIER2 KIAA1193|Mi-er2 MIER family member 2 protein-coding 320-327 chr22 28144190 28144429 + 3 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -223697 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 623-62 chr2 99666313 99666648 + 3 NA intron (NM_001025108, intron 11 of 23) L1MDa|LINE|L1 -176463 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 663-118 chr8 127196154 127196637 + 3 NA intron (NR_120364, intron 1 of 2) intron (NR_120364, intron 1 of 2) 1232 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 448-154 chr3 30883845 30884016 + 3 NA intron (NM_207359, intron 1 of 14) intron (NM_207359, intron 1 of 14) 10731 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 567-47 chr13 76296020 76296236 + 3 NA Intergenic Intergenic -360996 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 597-100 chr4 66864713 66864965 + 3 NA Intergenic LTR78|LTR|ERV1 557161 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 451-40 chr11 101295548 101295822 + 3 NA Intergenic L1PB1|LINE|L1 -165872 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 627-7 chr10 19715169 19715543 + 3 NA intron (NR_120646, intron 4 of 4) Charlie1a|DNA|hAT-Charlie 13194 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 447-11 chr1 175589384 175589649 + 3 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 154079 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 664-115 chr8 87329675 87329969 + 3 NA intron (NM_173538, intron 8 of 10) L1MCa|LINE|L1 463407 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 555-166 chr5 112564220 112564537 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -64058 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 677-39 chr17 68605260 68605541 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -4033 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 604-163 chr8 88165222 88165636 + 3 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 162054 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 270-169 chr19 30400818 30400910 + 3 NA intron (NM_014717, intron 1 of 4) L1MD2|LINE|L1 28480 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 352-431 chr5 131300169 131300421 + 3 NA intron (NM_001038702, intron 1 of 4) intron (NM_001038702, intron 1 of 4) 36286 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 752-14 chr12 34618115 34618593 + 3 NA Intergenic ALR/Alpha|Satellite|centr 595858 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 464-23 chr10 83216904 83217109 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 460083 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 349-131 chr12 61642014 61642281 + 3 NA Intergenic Intergenic 550692 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 520-204 chr4 31205013 31205244 + 3 NA intron (NR_125935, intron 4 of 4) intron (NR_125935, intron 4 of 4) 33984 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 399-204 chr3 35099822 35100063 + 3 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 294081 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 180-63 chr17 59134067 59134135 + 3 NA intron (NM_182620, intron 1 of 3) intron (NM_182620, intron 1 of 3) 3771 NR_030411 768216 NR_030411 ENSG00000211514 MIR454 MIRN454|hsa-mir-454|mir-454 microRNA 454 ncRNA 564-199 chr8 36295763 36296221 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -488382 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 677-86 chr8 138418181 138418637 + 3 NA intron (NM_001362965, intron 1 of 19) L1PA15|LINE|L1 78852 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 867-9 chr10 69782138 69782783 + 3 NA Intergenic Intergenic -19446 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 842-57 chr8 138455411 138455778 + 3 NA intron (NM_001362965, intron 1 of 19) MIR|SINE|MIR 41667 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 466-89 chr15 94958942 94959314 + 3 NA Intergenic L1MA6|LINE|L1 103765 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 361-73 chr11 37935726 37935875 + 3 NA Intergenic Intergenic -2801 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 508-87 chr19 9327483 9327772 + 3 NA intron (NM_001202425, intron 1 of 8) L1MC5a|LINE|L1 2932 NM_001202425 100529215 Hs.728944 NM_001172650 ENSG00000270011 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 213-275 chr8 78385924 78386076 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -130340 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 752-30 chr18 35253659 35254145 + 3 NA exon (NM_001288711, exon 2 of 2) exon (NM_001288711, exon 2 of 2) 12868 NM_001135178 84307 Hs.591061 NM_032347 ENSG00000186812 ZNF397 ZNF47|ZSCAN15 zinc finger protein 397 protein-coding 488-129 chr2 33828093 33828271 + 3 NA intron (NR_126403, intron 1 of 5) L1PA15|LINE|L1 -99965 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 668-84 chr5 90045857 90046152 + 3 NA Intergenic Intergenic -29284 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 508-262 chr9 106544016 106544285 + 3 NA Intergenic L1M6|LINE|L1 -56778 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 503-18 chr1 181837829 181838077 + 3 NA Intergenic L1MA6|LINE|L1 223759 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 566-207 chr9 30184900 30185228 + 3 NA Intergenic MER92-int|LTR|ERV1 223390 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 514-91 chr14 69640201 69640391 + 3 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 28700 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 493-232 chr4 187800539 187800726 + 3 NA Intergenic L1MA3|LINE|L1 -127991 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 531-268 chr9 98948899 98949146 + 3 NA intron (NM_001855, intron 2 of 41) L1ME3B|LINE|L1 5115 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 677-14 chr10 58534763 58535231 + 3 NA intron (NM_001080512, intron 1 of 20) L1PB4|LINE|L1 22125 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 350-337 chr4 20906872 20907054 + 3 NA intron (NM_147182, intron 2 of 8) L2a|LINE|L2 -24253 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 545-201 chr6 48432283 48432595 + 3 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -363750 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 323-556 chr8 107119880 107120076 + 3 NA Intergenic L1ME3D|LINE|L1 216537 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 294-63 chr11 79216991 79217148 + 3 NA intron (NM_001098816, intron 2 of 33) MIR3|SINE|MIR 185040 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 470-166 chr3 5673152 5673381 + 3 NA Intergenic Intergenic -423011 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 631 chr1 36829478 36829797 + 3 NA intron (NM_000831, intron 10 of 15) intron (NM_000831, intron 10 of 15) 204878 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 521-267 chr9 38263341 38263693 + 3 NA Intergenic L1MA4|LINE|L1 -129185 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 484-51 chr12 92658198 92658470 + 3 NA Intergenic Intergenic -44509 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 485-102 chr17 11224284 11224547 + 3 NA Intergenic Intergenic -16798 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 384-185 chr2 150508946 150509120 + 3 NA Intergenic Intergenic -21338 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 415-248 chr7 3376697 3376840 + 3 NA intron (NM_152744, intron 1 of 44) L1ME4a|LINE|L1 75516 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 800-53 chr5 154686062 154686504 + 3 NA TTS (NR_031638) TTS (NR_031638) 507 NR_031638 100302284 NR_031638 ENSG00000221552 MIR1303 MIRN1303|hsa-mir-1303 microRNA 1303 ncRNA 472-109 chr16 12621585 12621872 + 3 NA Intergenic Intergenic -98593 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 902-23 chr2 212863076 212863499 + 3 NA Intergenic L1M3f|LINE|L1 -62970 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 532-179 chr4 11536852 11537211 + 3 NA Intergenic Intergenic -108137 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 517-240 chr6 156410785 156410969 + 3 NA Intergenic MLT2B2|LTR|ERVL 32127 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 668-70 chr3 182548858 182549213 + 3 NA Intergenic Intergenic -41911 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 942-28 chr4 31389333 31389726 + 3 NA Intergenic L1MEg|LINE|L1 -117015 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 519-159 chr4 36545673 36545961 + 3 NA intron (NR_149124, intron 3 of 4) L1MEd|LINE|L1 96083 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 456-266 chr5 171567687 171567853 + 3 NA Intergenic L1MD|LINE|L1 148123 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 674-62 chr3 193159732 193160163 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -81275 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 418-209 chr5 20992875 20993033 + 3 NA Intergenic L1PA16|LINE|L1 -377419 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 368-94 chr12 13674818 13675111 + 3 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -298219 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 512-202 chr4 179229453 179229731 + 3 NA Intergenic Intergenic -1321656 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 591-30 chr12 55585241 55585716 + 3 NA Intergenic Intergenic 11063 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 357-141 chr16 8516637 8516834 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 73103 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 425-325 chr9 96766650 96766897 + 3 NA intron (NM_001314060, intron 2 of 4) intron (NM_001314060, intron 2 of 4) 11314 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 520-92 chr14 63024317 63024632 + 3 NA intron (NM_139318, intron 1 of 10) L1MA8|LINE|L1 20984 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 191-154 chr4 111329038 111329125 + 3 NA Intergenic L1MA7|LINE|L1 -468434 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 586-65 chr18 59417865 59418219 + 3 NA Intergenic Intergenic -58777 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 469-52 chr11 54905267 54905533 + 3 NA Intergenic ALR/Alpha|Satellite|centr 198568 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 736-25 chr14 53104292 53104617 + 3 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 48869 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 338-163 chr14 56350452 56350628 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -163791 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 332-416 chr5 60096804 60096969 + 3 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -203160 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 439-294 chr8 139051340 139051548 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -137403 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 1117-8 chr5 11132740 11133579 + 3 NA intron (NM_001288715, intron 11 of 20) intron (NM_001288715, intron 11 of 20) -371925 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 752 chr1 34328751 34329107 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR 152022 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 909-5 chr11 55011802 55012203 + 3 NA Intergenic ALR/Alpha|Satellite|centr -250153 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 865-32 chr3 6046789 6047134 + 3 NA Intergenic L1MA8|LINE|L1 758488 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 514-76 chr13 94284623 94284933 + 3 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -96787 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 667-79 chr4 101380000 101380402 + 3 NA Intergenic L1PA16|LINE|L1 32424 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 535-159 chr21 28395890 28396075 + 3 NA Intergenic HERVL18-int|LTR|ERVL -143336 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 428-71 chr14 78442808 78443005 + 3 NA intron (NM_004796, intron 1 of 16) MIRc|SINE|MIR 39187 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 402-276 chr5 86737785 86738017 + 3 NA Intergenic MER1A|DNA|hAT-Charlie -8917 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 515-79 chr16 12734192 12734491 + 3 NA intron (NM_018340, intron 2 of 3) AluSz6|SINE|Alu 14020 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 290-489 chr9 118469510 118469732 + 3 NA Intergenic Intergenic -210050 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 612-23 chr11 15527625 15527991 + 3 NA Intergenic AluSq2|SINE|Alu -116077 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 447-101 chr18 8520383 8520583 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -88962 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 610-164 chr7 73384968 73385368 + 3 NA Intergenic AluJo|SINE|Alu -48610 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 699-20 chr11 120085957 120086349 + 3 NA Intergenic Intergenic 42700 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 619-67 chr2 60647166 60647488 + 3 NA Intergenic Intergenic -93673 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 632-41 chr17 73906543 73906970 + 3 NA Intergenic Intergenic -78219 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 374-109 chr15 34203142 34203283 + 3 NA intron (NM_024713, intron 1 of 9) L2-1_AMi|LINE|L2 6884 NM_024713 79768 Hs.633566 NM_024713 ENSG00000134152 KATNBL1 C15orf29 katanin regulatory subunit B1 like 1 protein-coding 522-172 chr3 57441943 57442184 + 3 NA intron (NM_001366028, intron 29 of 73) L1MEg|LINE|L1 102281 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 804-22 chr16 9452275 9452855 + 3 NA intron (NR_126349, intron 1 of 4) L1PB2|LINE|L1 2940 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 494-204 chr4 62224118 62224457 + 3 NA Intergenic Intergenic -62522 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 431-28 chr1 231746930 231747113 + 3 NA intron (NM_001164537, intron 4 of 13) AluJb|SINE|Alu 71496 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 844-52 chr5 36489544 36490065 + 3 NA Intergenic Intergenic -116551 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 690-17 chr11 70923019 70923422 + 3 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -50852 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 590-158 chr7 79889897 79890158 + 3 NA Intergenic Intergenic -244804 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 282-77 chr11 109274289 109274495 + 3 NA Intergenic L1PB1|LINE|L1 -147798 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 329-175 chr15 23814785 23815002 + 3 NA Intergenic Intergenic -127588 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 680-25 chr11 115663412 115663785 + 3 NA Intergenic MIR3|SINE|MIR 71164 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 608-35 chr13 20746053 20746432 + 3 NA intron (NM_001318939, intron 2 of 4) AluSg|SINE|Alu 27716 NM_174928 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 EEF1A lysine methyltransferase 1 protein-coding 672-101 chr7 38141301 38141724 + 3 NA Intergenic Intergenic -36733 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 474-158 chr2 200135560 200135727 + 3 NA Intergenic MER21C|LTR|ERVL -170236 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 476-28 chr10 76162857 76163144 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 380239 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 459-104 chr16 83315198 83315493 + 3 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -193001 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 601-146 chr8 113362047 113362518 + 3 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 14870 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 744-42 chr22 41794647 41794961 + 3 NA intron (NM_152513, intron 28 of 30) L2c|LINE|L2 -5818 NM_001304797 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 582-170 chr9 135628467 135628856 + 3 NA intron (NM_182974, intron 3 of 4) L1MB7|LINE|L1 10879 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 453-72 chr14 84888680 84888980 + 3 NA Intergenic L1MEf|LINE|L1 -383102 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 878-34 chr5 9848022 9848474 + 3 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -6129 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 527-232 chr6 143319645 143319860 + 3 NA intron (NM_016108, intron 4 of 5) L1MA10|LINE|L1 122925 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 543-89 chr16 50971112 50971378 + 3 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -46513 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 1140-15 chr9 105562037 105562701 + 3 NA intron (NM_001351498, intron 1 of 9) LTR8B|LTR|ERV1 4238 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 797-34 chr3 154839341 154839863 + 3 NA Intergenic L1MEc|LINE|L1 -184522 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 549-215 chr8 120550036 120550376 + 3 NA intron (NM_021021, intron 4 of 6) intron (NM_021021, intron 4 of 6) 104787 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 446-239 chr5 52367061 52367254 + 3 NA Intergenic Intergenic 359126 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 544-224 chr8 57602290 57602518 + 3 NA Intergenic Intergenic -143745 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 778-73 chr9 74360782 74361318 + 3 NA Intergenic Intergenic -10481 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 537-172 chr4 55643857 55644165 + 3 NA Intergenic L1MA3|LINE|L1 -7218 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 438-21 chr1 193987525 193987824 + 3 NA Intergenic Intergenic 682929 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 504-77 chr15 24200522 24200718 + 3 NA Intergenic FAM|SINE|Alu -30672 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 915 chr1 238826851 238827327 + 3 NA Intergenic Intergenic -341072 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 684-30 chr13 71301014 71301489 + 3 NA Intergenic Intergenic 286110 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 433-80 chr14 67546300 67546507 + 3 NA intron (NM_020715, intron 2 of 28) AluSp|SINE|Alu -12553 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 1193-3 chr12 34585763 34586479 + 3 NA Intergenic ALR/Alpha|Satellite|centr 563625 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 1086-11 chr17 80654959 80655386 + 3 NA intron (NM_020761, intron 3 of 33) AluSz|SINE|Alu 110334 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 496-61 chr12 127779355 127779551 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -102164 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 535-90 chr15 81600366 81600637 + 3 NA Intergenic L1MEg|LINE|L1 -226288 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 590-117 chr4 17362475 17362789 + 3 NA Intergenic MER20|DNA|hAT-Charlie -41750 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 442-12 chr1 112319657 112319840 + 3 NA Intergenic Intergenic -76466 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 505-184 chr21 27679953 27680215 + 3 NA Intergenic LTR28B|LTR|ERV1 -42295 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 472-59 chr12 38498744 38498939 + 3 NA Intergenic L1ME3G|LINE|L1 182067 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 503-140 chr19 58291423 58291759 + 3 NA intron (NM_021089, intron 3 of 3) L2a|LINE|L2 12625 NR_144447 108903150 Hs.715293 NR_144447 ENSG00000267216 ZNF8-ERVK3-1 - ZNF8-ERVK3-1 readthrough ncRNA 917-27 chr8 109148678 109149175 + 3 NA Intergenic Intergenic 62298 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 538-5 chr1 59044665 59044944 + 3 NA intron (NR_110626, intron 2 of 2) Charlie4z|DNA|hAT-Charlie 24328 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 516-171 chr3 60288990 60289195 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -208183 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 795-13 chr10 78651327 78651741 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 384192 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 421-215 chr4 68059078 68059279 + 3 NA intron (NM_207407, intron 9 of 9) MIRb|SINE|MIR 4119 NR_027094 401135 Hs.130270 NM_001014372 SYT14P1 CHR415SYT|SYT14L|SYTDEP synaptotagmin 14 pseudogene 1 pseudo 886-4 chr10 41860238 41860856 + 3 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 507498 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 362-33 chr1 202232180 202232475 + 3 NA intron (NM_001017403, intron 3 of 17) intron (NM_001017403, intron 3 of 17) 18172 NM_001017404 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 417-270 chr7 105488658 105488845 + 3 NA intron (NM_001318164, intron 7 of 15) intron (NM_001318164, intron 7 of 15) 19769 NM_001318163 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 IDDABS pseudouridine synthase 7 protein-coding 502-51 chr11 55105733 55105947 + 3 NA Intergenic ALR/Alpha|Satellite|centr -156315 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 694-93 chr4 34154743 34155092 + 3 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 114830 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 405-106 chr16 82241270 82241485 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -71153 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 240-381 chr6 91635069 91635250 + 3 NA intron (NR_104154, intron 2 of 3) intron (NR_104154, intron 2 of 3) 55269 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 456-323 chr8 118648220 118648437 + 3 NA intron (NR_038210, intron 2 of 4) L2c|LINE|L2 -26365 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 774-6 chr10 19712877 19713363 + 3 NA intron (NR_120646, intron 4 of 4) LTR9B|LTR|ERV1 15430 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 410-169 chr20 54891941 54892170 + 3 NA Intergenic Intergenic 416462 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 629-135 chr8 139575947 139576387 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 126956 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 513-85 chr15 47154755 47155028 + 3 NA Intergenic Intergenic -29198 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 407-279 chr6 90637171 90637420 + 3 NA Intergenic AluJr|SINE|Alu -50223 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 261-123 chr15 67405141 67405297 + 3 NA non-coding (NR_040051, exon 6 of 6) non-coding (NR_040051, exon 6 of 6) 115754 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 347-233 chr2 101430944 101431155 + 3 NA intron (NM_001367509, intron 4 of 13) intron (NM_001367509, intron 4 of 13) -43546 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 490-270 chr7 64273056 64273343 + 3 NA Intergenic Intergenic -40674 NM_001294255 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 179-123 chr8 113604660 113604735 + 3 NA Intergenic Intergenic -167758 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 595-42 chr12 114593941 114594435 + 3 NA Intergenic L1MC5a|LINE|L1 89987 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 604-142 chr6 131452749 131453087 + 3 NA Intergenic LTR67B|LTR|ERVL -120308 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 480-296 chr8 88982192 88982421 + 3 NA Intergenic Intergenic -654823 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 537-98 chr19 32027915 32028245 + 3 NA intron (NR_110674, intron 1 of 2) intron (NR_110674, intron 1 of 2) 2218 NR_110675 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 303-45 chr10 70947947 70948137 + 3 NA intron (NR_134313, intron 1 of 2) AluJr|SINE|Alu 8989 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 701-23 chr14 60231141 60231462 + 3 NA Intergenic L1M4|LINE|L1 -14449 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 458-272 chr9 80766172 80766405 + 3 NA Intergenic Intergenic 791265 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 422-106 chr16 20567302 20567601 + 3 NA intron (NM_001105069, intron 1 of 13) (AT)n|Simple_repeat|Simple_repeat 8916 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 924-31 chr5 9841456 9841944 + 3 NA intron (NR_027112, intron 4 of 12) LTR40c|LTR|ERVL -12677 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 331-484 chr7 21807657 21807825 + 3 NA intron (NM_001277115, intron 62 of 81) intron (NM_001277115, intron 62 of 81) 138158 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 441-77 chr14 54221481 54221659 + 3 NA Intergenic Intergenic -175298 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 581-6 chr1 189695291 189695552 + 3 NA Intergenic Intergenic 780589 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 563-85 chr2 24528081 24528272 + 3 NA intron (NM_001362952, intron 1 of 23) L1MA9|LINE|L1 36299 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 353-91 chr11 93927853 93928007 + 3 NA Intergenic L1MC1|LINE|L1 -77312 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 420-11 chr1 77653111 77653372 + 3 NA intron (NM_001308237, intron 1 of 13) L1MB7|LINE|L1 29417 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 575-99 chr2 236998367 236998638 + 3 NA Intergenic Intergenic 57665 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 276-485 chr9 112998266 112998415 + 3 NA 5' UTR (NM_001101338, exon 5 of 5) 5' UTR (NM_001101338, exon 5 of 5) 13852 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 404-247 chr5 3977725 3977935 + 3 NA Intergenic Intergenic 381998 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 574-22 chr11 23650093 23650306 + 3 NA Intergenic L2|LINE|L2 -231009 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 300-178 chr19 57468505 57468726 + 3 NA TTS (NM_001330613) TTS (NM_001330613) 8951 NM_001330613 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 303-468 chr8 124402741 124402948 + 3 NA Intergenic AluSx|SINE|Alu -30145 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 615-148 chrX 38374376 38374725 + 3 NA intron (NM_000531, intron 3 of 9) intron (NM_000531, intron 3 of 9) 21946 NM_000531 5009 Hs.117050 NM_000531 ENSG00000036473 OTC OCTD ornithine carbamoyltransferase protein-coding 231-323 chr7 11178321 11178409 + 3 NA Intergenic Intergenic 204493 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 304-86 chr11 83356433 83356623 + 3 NA Intergenic Intergenic -70121 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 414-217 chr3 120643860 120644118 + 3 NA intron (NM_000187, intron 10 of 13) intron (NM_000187, intron 10 of 13) 38250 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 863-27 chr3 84891291 84891984 + 3 NA intron (NR_147147, intron 2 of 3) MER67D|LTR|ERV1 9547 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 653-37 chr13 85851283 85851565 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -52005 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 513-216 chr5 8063076 8063391 + 3 NA Intergenic Intergenic 194085 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 348-536 chr8 125122784 125122929 + 3 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 30996 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 293-272 chr3 114905087 114905294 + 3 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -4565 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 510-272 chr8 46154758 46155093 + 3 NA Intergenic ALR/Alpha|Satellite|centr 462718 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 421-176 chr22 27120395 27120648 + 3 NA Intergenic L2a|LINE|L2 -60003 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 525-123 chr2 103586299 103586510 + 3 NA Intergenic Tigger15a|DNA|TcMar-Tigger -601975 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 342-32 chr1 154893257 154893436 + 3 NA Intergenic L1MEc|LINE|L1 -23065 NM_002249 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 573-110 chr21 29602868 29603293 + 3 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 7040 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 434-141 chr2 59420448 59420661 + 3 NA Intergenic Intergenic 202846 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 492-9 chr1 105542708 105542916 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 76123 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 563-157 chr6 27458755 27459064 + 3 NA intron (NR_144688, intron 3 of 8) L1MA5|LINE|L1 13989 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 496-257 chr7 25477761 25477973 + 3 NA Intergenic Charlie13a|DNA|hAT-Charlie 185273 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 354-377 chr5 82666801 82667017 + 3 NA Intergenic L2|LINE|L2 -173246 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 455-49 chr11 39004445 39004674 + 3 NA Intergenic L1MEd|LINE|L1 355701 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 614-144 chr9 30300467 30300843 + 3 NA Intergenic LTR12C|LTR|ERV1 107799 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 467-268 chr7 67400028 67400300 + 3 NA Intergenic L1ME3B|LINE|L1 64188 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 425-304 chr8 91538907 91539094 + 3 NA Intergenic L1M2|LINE|L1 289681 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 478-205 chr4 45928479 45928697 + 3 NA Intergenic Intergenic 195466 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 570-27 chr10 69606147 69606446 + 3 NA Intergenic L1MD1|LINE|L1 -23951 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 420-297 chr8 127467522 127467727 + 3 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 14515 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 492-177 chr3 97248881 97249202 + 3 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -190566 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 459-275 chr7 41488985 41489248 + 3 NA Intergenic MIRb|SINE|MIR -204803 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 367-357 chr5 60075047 60075264 + 3 NA intron (NM_001349243, intron 2 of 16) L1PREC2|LINE|L1 -181429 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 295-105 chr12 125452058 125452246 + 3 NA intron (NM_052907, intron 3 of 8) L1ME2|LINE|L1 125536 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 630-138 chr8 84847938 84848340 + 3 NA intron (NM_001287244, intron 3 of 7) L1MB2|LINE|L1 142212 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 501-138 chr20 59325627 59325804 + 3 NA 3' UTR (NM_001302456, exon 4 of 4) 3' UTR (NM_001302456, exon 4 of 4) 25104 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 730-13 chr11 130895918 130896414 + 3 NA intron (NM_014758, intron 8 of 10) intron (NM_014758, intron 8 of 10) 20321 NM_001347926 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 457-209 chr5 131324643 131324884 + 3 NA intron (NM_020240, intron 2 of 5) intron (NM_020240, intron 2 of 5) 60754 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 604-140 chr6 41263819 41264181 + 3 NA Intergenic L1P4|LINE|L1 14623 NR_002794 221438 Hs.639392 NR_002794 TREML5P TLT5|TREML2P|TREML2P1 triggering receptor expressed on myeloid cells like 5, pseudogene pseudo 393-375 chr8 140177969 140178200 + 3 NA intron (NM_001160372, intron 17 of 22) L1ME1|LINE|L1 -77549 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 463-266 chr7 52137479 52137679 + 3 NA Intergenic Intergenic -744323 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 460-273 chr7 47634135 47634447 + 3 NA Intergenic Intergenic 12352 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 575-187 chr7 71939634 71939944 + 3 NA intron (NM_001363460, intron 4 of 5) LTR51|LTR|ERV1 397602 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 1215-9 chr5 46267573 46268377 + 3 NA Intergenic ALR/Alpha|Satellite|centr -571595 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 1229-8 chrX 40963656 40964270 + 3 NA Intergenic MIRb|SINE|MIR -121482 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 544-140 chr22 33483127 33483440 + 3 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -46614 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 812-14 chr12 77080642 77081033 + 3 NA Intergenic Intergenic -15268 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 753-21 chr14 64312230 64312657 + 3 NA intron (NM_001291712, intron 2 of 13) AluSx|SINE|Alu -18033 NM_001040275 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 439-309 chr9 105119180 105119422 + 3 NA Intergenic Intergenic -125304 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 697-14 chr12 8566741 8567127 + 3 NA Intergenic Intergenic -26029 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 631-9 chr1 173716054 173716313 + 3 NA intron (NM_014458, intron 2 of 11) intron (NM_014458, intron 2 of 11) 1202 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 900-37 chr7 7160235 7160634 + 3 NA Intergenic Intergenic -22181 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 758-64 chr5 101520108 101520492 + 3 NA Intergenic LOR1a|LTR|ERV1 -617018 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 486-69 chr13 87794562 87794767 + 3 NA Intergenic Intergenic 15856 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 436-158 chr20 11414474 11414771 + 3 NA Intergenic L1MC3|LINE|L1 -141239 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 847-9 chr11 91800620 91800959 + 3 NA Intergenic Intergenic -424245 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 314-479 chr5 128185765 128185880 + 3 NA intron (NM_001046, intron 26 of 26) intron (NM_001046, intron 26 of 26) 102056 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 514-173 chr20 52818919 52819155 + 3 NA Intergenic Intergenic -153321 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 417-25 chr10 21067478 21067682 + 3 NA intron (NM_001173484, intron 2 of 6) L3|LINE|CR1 -106410 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 545-75 chr14 100755346 100755657 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 28609 NM_001317172 8788 Hs.116631 NM_003836 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta like non-canonical Notch ligand 1 protein-coding 590-106 chr3 102922405 102922648 + 3 NA Intergenic L1PA7|LINE|L1 487511 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 621-135 chr8 129380809 129381228 + 3 NA intron (NR_130918, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 103124 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 463-241 chr5 124156385 124156699 + 3 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 281978 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 680-47 chr18 37768383 37768874 + 3 NA Intergenic MER31B|LTR|ERV1 111493 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 449-243 chr6 126499857 126500164 + 3 NA Intergenic Intergenic 15379 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 486-130 chr2 11349161 11349448 + 3 NA Intergenic Intergenic -3867 NM_001321643 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 360-216 chr2 65945792 65945944 + 3 NA Intergenic Intergenic 412460 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 896-35 chr7 48892003 48892636 + 3 NA Intergenic MER61-int|LTR|ERV1 -32228 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 478-268 chr7 52351143 52351408 + 3 NA Intergenic Intergenic -684358 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 690-72 chr3 86680629 86681054 + 3 NA Intergenic L1PA16|LINE|L1 198898 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 484-133 chr2 99125014 99125272 + 3 NA intron (NM_001349014, intron 1 of 16) L1MC2|LINE|L1 16037 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 511-202 chr5 2587311 2587622 + 3 NA Intergenic Intergenic -125125 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 441-59 chr12 103917739 103918027 + 3 NA intron (NR_027249, intron 1 of 15) L1MEc|LINE|L1 12328 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 545-110 chr2 65675364 65675725 + 3 NA Intergenic L1MEg|LINE|L1 -242945 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 380-275 chr4 45625637 45625814 + 3 NA Intergenic Intergenic 498329 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 432-105 chr17 61092087 61092307 + 3 NA intron (NM_001330413, intron 23 of 25) L1ME3|LINE|L1 275507 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 438-73 chr14 32546640 32546874 + 3 NA exon (NM_004274, exon 4 of 14) exon (NM_004274, exon 4 of 14) 217459 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 246-404 chr8 91476706 91476890 + 3 NA Intergenic L1MEc|LINE|L1 227479 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 343-100 chr12 37957997 37958168 + 3 NA Intergenic ALR/Alpha|Satellite|centr -358692 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 607-87 chr20 44826953 44827292 + 3 NA Intergenic MER112|DNA|hAT-Charlie -16576 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 362-311 chr4 74127325 74127480 + 3 NA intron (NM_001351311, intron 2 of 7) L1MA4|LINE|L1 4129 NM_001351310 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 291-57 chr10 85115366 85115557 + 3 NA Intergenic Intergenic 83444 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 383-267 chr4 2327427 2327636 + 3 NA intron (NM_001172656, intron 5 of 11) L1M2|LINE|L1 37283 NM_001172660 57732 Hs.292056 NM_020972 ENSG00000159733 ZFYVE28 LST2|LYST2 zinc finger FYVE-type containing 28 protein-coding 483-53 chr13 43645503 43645705 + 3 NA intron (NM_001347964, intron 2 of 17) intron (NM_001347964, intron 2 of 17) -16127 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 177-154 chr7 119167294 119167361 + 3 NA Intergenic L1MA4A|LINE|L1 740048 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 498-108 chr18 64237385 64237658 + 3 NA intron (NR_033983, intron 2 of 2) intron (NR_033983, intron 2 of 2) 22534 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 437-139 chr2 103719438 103719648 + 3 NA Intergenic L1PREC2|LINE|L1 688789 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 382-234 chr20 4095748 4095917 + 3 NA Intergenic L1MEc|LINE|L1 -52947 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 556-29 chr10 113312350 113312830 + 3 NA Intergenic MIRc|SINE|MIR 183319 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 322-411 chr5 11657945 11658120 + 3 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -68966 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 195-112 chr2 126406805 126406924 + 3 NA Intergenic L1MB1|LINE|L1 -249071 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 654-52 chr18 70945308 70945616 + 3 NA Intergenic L1M1|LINE|L1 -294508 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 270-21 chr1 207384606 207384710 + 3 NA Intergenic Intergenic 62980 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 339-113 chr11 117449490 117449667 + 3 NA intron (NM_020693, intron 20 of 32) intron (NM_020693, intron 20 of 32) 121724 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 121-33 chr21 39486084 39486170 + 3 NA intron (NM_001317740, intron 3 of 5) MER92-int|LTR|ERV1 34273 NM_007341 6450 Hs.473847 NM_007341 ENSG00000185437 SH3BGR 21-GARP SH3 domain binding glutamate rich protein protein-coding 944-25 chr8 83771123 83771463 + 3 NA Intergenic Intergenic 367535 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 631-75 chr20 31190248 31190624 + 3 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -67228 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 524-259 chr8 83482800 83483060 + 3 NA Intergenic Intergenic 79172 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 446-35 chr10 31710096 31710376 + 3 NA Intergenic Intergenic 198690 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 647-57 chr20 43776812 43777159 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -49983 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 423-41 chr10 123811928 123812125 + 3 NA intron (NM_198148, intron 4 of 13) L1ME3F|LINE|L1 79781 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 495-141 chr21 27313792 27314060 + 3 NA Intergenic L1PB4|LINE|L1 -346838 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 501-113 chr2 123281137 123281437 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -207806 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 405-259 chr5 123623382 123623572 + 3 NA Intergenic L3|LINE|CR1 78060 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 899-30 chr8 20921369 20921774 + 3 NA Intergenic MIR3|SINE|MIR -32062 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 365-245 chr22 26246298 26246486 + 3 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 76918 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 694-40 chr14 84963339 84963701 + 3 NA Intergenic Intergenic -308412 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 267-12 chr1 81746964 81747114 + 3 NA intron (NM_001297704, intron 1 of 20) (TA)n|Simple_repeat|Simple_repeat 47269 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 615-145 chr9 24137378 24137637 + 3 NA Intergenic Intergenic -286906 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 387-196 chr20 14382651 14382837 + 3 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -45077 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 549-199 chr7 92930912 92931163 + 3 NA Intergenic L1M3c|LINE|L1 -94410 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 601-68 chr19 52321293 52321576 + 3 NA intron (NM_144684, intron 4 of 4) intron (NM_144684, intron 4 of 4) -14809 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 464-65 chr14 59898671 59898968 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie -20894 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 598-22 chr10 52503100 52503353 + 3 NA Intergenic Intergenic -32693 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 532-128 chr2 105971373 105971569 + 3 NA Intergenic Intergenic -94217 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 373-139 chr16 3225774 3226049 + 3 NA intron (NM_198088, intron 4 of 4) intron (NM_198088, intron 4 of 4) 9247 NM_198088 7752 Hs.632222 NM_003454 ENSG00000010539 ZNF200 - zinc finger protein 200 protein-coding 423-257 chr6 162349625 162349803 + 3 NA intron (NM_004562, intron 2 of 11) L1ME1|LINE|L1 -377418 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 633-83 chr4 31531931 31532264 + 3 NA intron (NR_149121, intron 1 of 2) L1MA4|LINE|L1 25553 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 465-197 chr4 29954485 29954689 + 3 NA Intergenic Intergenic 740295 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 542-40 chr12 4743668 4743946 + 3 NA intron (NM_017417, intron 3 of 10) intron (NM_017417, intron 3 of 10) 23407 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 778-49 chr4 35698205 35698656 + 3 NA Intergenic L2c|LINE|L2 545509 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 563-179 chr8 5499707 5500002 + 3 NA Intergenic Intergenic -504940 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 445-65 chr14 47982658 47982834 + 3 NA Intergenic Intergenic -187732 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 586-134 chr6 113171546 113171908 + 3 NA Intergenic Intergenic 261720 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 245-156 chr17 32367518 32367675 + 3 NA intron (NM_003457, intron 8 of 10) intron (NM_003457, intron 8 of 10) 17458 NM_003457 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 389-277 chr5 5792763 5792941 + 3 NA Intergenic Intergenic 370175 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 785-50 chr6 40461711 40462282 + 3 NA intron (NM_020737, intron 1 of 2) MER124|DNA?|DNA? 83659 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 721-68 chr5 62944159 62944521 + 3 NA Intergenic Intergenic 365521 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 387-372 chr8 124108406 124108564 + 3 NA intron (NM_001039112, intron 39 of 40) intron (NM_001039112, intron 39 of 40) 63037 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 485-105 chr17 33821238 33821498 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -287608 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 459-297 chr8 80642349 80642648 + 3 NA intron (NM_001033723, intron 8 of 8) MER44B|DNA|TcMar-Tigger 156272 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 498-46 chr11 24240416 24240732 + 3 NA Intergenic LTR16B|LTR|ERVL -256479 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 448-195 chr4 181025139 181025366 + 3 NA Intergenic Intergenic 133897 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 529-119 chr2 192425082 192425265 + 3 NA Intergenic Intergenic -230240 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 483-253 chr8 5129684 5129892 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -134874 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 518-280 chr7 88510613 88510959 + 3 NA Intergenic Intergenic -203892 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 814-57 chr7 111206306 111206858 + 3 NA intron (NM_032549, intron 3 of 5) L1MA3|LINE|L1 115455 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 517-218 chr5 95096019 95096295 + 3 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -14291 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 679 chr1 13940555 13941002 + 3 NA Intergenic Intergenic 191363 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 398-153 chr2 26753355 26753546 + 3 NA Intergenic LTR26C|LTR|ERV1 -10834 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 618 chr1 10984411 10984824 + 3 NA Intergenic AluJb|SINE|Alu -2580 NM_001170754 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 855-52 chr9 119386286 119386659 + 3 NA Intergenic Intergenic -17037 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 372-443 chr6 138676377 138676605 + 3 NA Intergenic MIR|SINE|MIR -15177 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 521-253 chr8 67905298 67905557 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger -46619 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 460-123 chr19 27368606 27368908 + 3 NA Intergenic ALR/Alpha|Satellite|centr -424674 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 588-134 chr6 61914972 61915367 + 3 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 341039 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 450-37 chr10 111927228 111927399 + 3 NA Intergenic MIRb|SINE|MIR 256452 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 617-139 chr8 134765228 134765492 + 3 NA Intergenic MER63B|DNA|hAT-Blackjack 35247 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 450-20 chr1 218746605 218746786 + 3 NA intron (NR_031644, intron 4 of 6) L1MA3|LINE|L1 171816 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 199-221 chr6 155685910 155685995 + 3 NA Intergenic Intergenic 171108 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 446-96 chr13 107829509 107829702 + 3 NA intron (NR_046848, intron 1 of 1) (ATATTA)n|Simple_repeat|Simple_repeat 5853 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 450-217 chr4 22834797 22835031 + 3 NA Intergenic L1MA9|LINE|L1 120825 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 517-29 chr10 30172078 30172360 + 3 NA Intergenic Intergenic -39633 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 583-113 chr3 109891647 109891921 + 3 NA Intergenic L1MA9|LINE|L1 288956 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 428-160 chr21 28184484 28184637 + 3 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 44107 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 596-43 chr12 15166724 15167192 + 3 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 15035 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 764-69 chr8 86249340 86249775 + 3 NA Intergenic L1MA1|LINE|L1 -19176 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 766-12 chr12 34559927 34560332 + 3 NA Intergenic ALR/Alpha|Satellite|centr 537633 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 727-81 chr8 59609856 59610327 + 3 NA Intergenic Intergenic 490881 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 377-218 chr2 133678198 133678487 + 3 NA Intergenic Intergenic -109879 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 554-17 chr1 175623711 175623989 + 3 NA intron (NM_003285, intron 1 of 22) MIR3|SINE|MIR 119745 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 428-205 chr4 36988867 36989046 + 3 NA Intergenic L1MC5a|LINE|L1 -12823 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 483-112 chr2 62360781 62361103 + 3 NA Intergenic Intergenic 145253 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 586-88 chr20 39161881 39162206 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 62705 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 491-226 chr6 56274006 56274321 + 3 NA intron (NM_001318752, intron 1 of 28) L1PA16|LINE|L1 -26583 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 333-148 chr14 59230867 59231092 + 3 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -32462 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 534-16 chr1 196102659 196102905 + 3 NA Intergenic L1MA1|LINE|L1 -14067 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 679-62 chr20 15722597 15722963 + 3 NA intron (NM_001351663, intron 8 of 17) L1ME3B|LINE|L1 200534 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 337-3 chr1 48011440 48011604 + 3 NA Intergenic Intergenic -14137 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 582-21 chr11 133885842 133886147 + 3 NA Intergenic Intergenic 12587 NR_039846 100616119 NR_039846 ENSG00000284020 MIR4697 - microRNA 4697 ncRNA 401-213 chr3 109198985 109199169 + 3 NA Intergenic MamGyp-int|LTR|Gypsy 20912 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 748-71 chr5 79409669 79410052 + 3 NA intron (NM_004272, intron 5 of 8) L1M4|LINE|L1 103976 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 542-226 chr8 114915821 114916067 + 3 NA Intergenic LTR9D|LTR|ERV1 752069 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 528-112 chr18 60447541 60447888 + 3 NA Intergenic L1PA11|LINE|L1 -74939 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 485-223 chr5 46236864 46237179 + 3 NA Intergenic ALR/Alpha|Satellite|centr -540641 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 381-221 chr20 6212303 6212473 + 3 NA Intergenic L1P4|LINE|L1 -88844 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 577-157 chr5 145191674 145192085 + 3 NA Intergenic Intergenic 643463 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 385-214 chr20 47923417 47923667 + 3 NA Intergenic Intergenic -59684 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 528-14 chr1 88914291 88914595 + 3 NA Intergenic L1MD3|LINE|L1 -22876 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 573-121 chr3 131785710 131785974 + 3 NA intron (NM_130808, intron 2 of 15) L1MEd|LINE|L1 200089 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 441-117 chr2 26772369 26772521 + 3 NA intron (NM_017877, intron 1 of 5) intron (NM_017877, intron 1 of 5) 8161 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 383-104 chr14 45151481 45151800 + 3 NA intron (NM_001308133, intron 4 of 21) intron (NM_001308133, intron 4 of 21) 15701 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 506-284 chr8 87619949 87620275 + 3 NA Intergenic L1ME5|LINE|L1 253903 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 514-113 chr16 65711278 65711617 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -135147 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 552-54 chr13 99834439 99834785 + 3 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) -105611 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 385-338 chr6 122099467 122099618 + 3 NA Intergenic Intergenic -300009 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 472-43 chr11 2650690 2650946 + 3 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 49180 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 349-64 chr10 66973345 66973506 + 3 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 38728 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 432-64 chr12 68087358 68087582 + 3 NA Intergenic L1MEd|LINE|L1 72270 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 470-75 chr14 61872068 61872350 + 3 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) -55486 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 469-295 chr9 19046724 19047024 + 3 NA intron (NM_001287049, intron 1 of 3) AluJr|SINE|Alu 2480 NM_001287049 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 425-47 chr10 130332916 130333202 + 3 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat 196650 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 654-23 chr11 5307102 5307534 + 3 NA Intergenic Intergenic -5372 NM_033179 79339 Hs.679499 NM_033179 ENSG00000183251 OR51B4 HOR5'Beta1 olfactory receptor family 51 subfamily B member 4 protein-coding 486-37 chr10 104981284 104981589 + 3 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -315220 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 1348-3 chr11 60672650 60673450 + 3 NA intron (NR_026946, intron 6 of 6) L1M4b|LINE|L1 -26562 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 643-91 chr4 106853672 106853996 + 3 NA Intergenic MIR|SINE|MIR 182479 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 352-253 chr2 147386615 147386766 + 3 NA Intergenic L3|LINE|CR1 -457827 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 472-30 chr10 39126292 39126562 + 3 NA Intergenic ALR/Alpha|Satellite|centr 429831 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 656-146 chrX 69669301 69669746 + 3 NA intron (NM_001005609, intron 1 of 7) L1MA9|LINE|L1 53410 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 312-43 chr10 54318557 54318711 + 3 NA intron (NM_001142767, intron 6 of 30) L1MC3|LINE|L1 -167596 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 256-297 chr4 115572786 115572892 + 3 NA Intergenic Intergenic -459219 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 703-56 chr22 34136924 34137368 + 3 NA Intergenic AluSx1|SINE|Alu -214258 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 374-293 chr5 4571548 4571731 + 3 NA Intergenic Intergenic -201842 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 688-55 chr17 13902023 13902290 + 3 NA Intergenic MIRb|SINE|MIR -122342 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 711-18 chr12 109690596 109690936 + 3 NA Intergenic MER63C|DNA|hAT-Blackjack -23059 NM_032829 84915 Hs.661785 NM_032829 ENSG00000139438 FAM222A C12orf34 family with sequence similarity 222 member A protein-coding 452-84 chr14 82051894 82052136 + 3 NA Intergenic Intergenic -308877 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 223-195 chr21 46114822 46114911 + 3 NA intron (NM_058174, intron 5 of 27) intron (NM_058174, intron 5 of 27) 16747 NM_058175 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 421-4 chr1 25171465 25171630 + 3 NA Intergenic L2a|LINE|L2 60955 NM_207170 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 562-189 chr6 18625637 18625990 + 3 NA intron (NR_149116, intron 4 of 7) L3|LINE|CR1 54029 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 546-157 chr3 186393296 186393642 + 3 NA Intergenic L1PA16|LINE|L1 -31235 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 348-53 chr10 55911894 55912093 + 3 NA Intergenic Intergenic -284051 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 878-49 chr8 89541433 89542037 + 3 NA Intergenic L2c|LINE|L2 215976 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 667-58 chr21 22539470 22539810 + 3 NA Intergenic L1PA15|LINE|L1 441023 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 410-95 chr14 87305462 87305769 + 3 NA Intergenic Intergenic 349679 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 330-88 chr11 36767118 36767303 + 3 NA Intergenic Intergenic -168931 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 689-12 chr10 54102255 54102619 + 3 NA intron (NM_001354411, intron 16 of 34) HERVL-int|LTR|ERVL -383793 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 277-310 chr5 25825655 25825826 + 3 NA Intergenic Intergenic 634787 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 330-208 chr17 35696090 35696250 + 3 NA intron (NM_001030006, intron 18 of 21) L2a|LINE|L2 -35469 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 333-599 chr9 30245204 30245390 + 3 NA Intergenic Intergenic 163157 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 510-11 chr1 106671636 106671921 + 3 NA Intergenic L1MC1|LINE|L1 -146461 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 407-281 chr6 122523175 122523450 + 3 NA intron (NM_001270393, intron 3 of 7) L1M4|LINE|L1 51395 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 473-76 chr14 36238125 36238387 + 3 NA Intergenic MARNA|DNA|TcMar-Mariner -61605 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 463-273 chr7 95711243 95711474 + 3 NA Intergenic L1MCa|LINE|L1 -61148 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 540-130 chr20 54788970 54789382 + 3 NA Intergenic L1PREC2|LINE|L1 313583 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 369-440 chr9 11502015 11502207 + 3 NA Intergenic L1MEc|LINE|L1 888905 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 475-18 chr1 236369113 236369359 + 3 NA Intergenic L1MCa|LINE|L1 -25050 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 486-322 chrX 58340595 58340782 + 3 NA Intergenic ALR/Alpha|Satellite|centr -430055 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 480-280 chr7 89599004 89599226 + 3 NA Intergenic Intergenic -520285 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 483-146 chr21 18397803 18397990 + 3 NA exon (NM_002772, exon 3 of 25) exon (NM_002772, exon 3 of 25) 5889 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 571-173 chr8 86637004 86637353 + 3 NA intron (NM_019098, intron 10 of 17) L1MA9|LINE|L1 106497 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 372-310 chr3 3222771 3222899 + 3 NA Intergenic Intergenic -43118 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 614-44 chr18 77291651 77291946 + 3 NA Intergenic L1MB7|LINE|L1 41950 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 588-128 chr5 120352285 120352561 + 3 NA Intergenic Intergenic -111855 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 503-260 chr7 42565383 42565597 + 3 NA Intergenic L1MEg|LINE|L1 140957 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 512-187 chr4 41024953 41025298 + 3 NA intron (NM_173075, intron 5 of 16) LTR76|LTR|ERV1 -167933 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 615-18 chr11 50372569 50372880 + 3 NA Intergenic ALR/Alpha|Satellite|centr -36423 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 317-313 chr3 111200812 111200968 + 3 NA Intergenic MIRc|SINE|MIR 129074 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 1005-6 chr14 100735107 100735505 + 3 NA 3' UTR (NM_001317172, exon 6 of 6) 3' UTR (NM_001317172, exon 6 of 6) 8414 NM_001317172 8788 Hs.116631 NM_003836 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta like non-canonical Notch ligand 1 protein-coding 416-285 chr5 151359212 151359354 + 3 NA Intergenic Intergenic -11724 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 394-269 chr5 66528096 66528274 + 3 NA Intergenic Intergenic -16581 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 356-73 chr11 16653428 16653654 + 3 NA intron (NM_001367872, intron 2 of 16) L1PB1|LINE|L1 84936 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 655-14 chr1 227610763 227611122 + 3 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 47386 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 437-170 chr3 53793994 53794238 + 3 NA intron (NM_001128840, intron 40 of 47) intron (NM_001128840, intron 40 of 47) 52303 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 666-33 chr15 92545672 92546068 + 3 NA Intergenic Intergenic 26393 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 612-109 chr5 7051335 7051723 + 3 NA Intergenic Intergenic 217825 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 465-29 chr10 56142618 56142792 + 3 NA Intergenic L1MD|LINE|L1 218554 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 413-113 chr17 56094279 56094439 + 3 NA Intergenic Intergenic -59116 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 692-62 chr22 33834761 33835090 + 3 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 85503 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 559-167 chr7 15226544 15226808 + 3 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -251818 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 474-228 chr5 27509581 27509869 + 3 NA Intergenic Intergenic 37433 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 689-65 chr4 7091093 7091678 + 3 NA Intergenic MER41A|LTR|ERV1 11991 NR_027441 730971 Hs.591718 NR_027441 LINC02447 - long intergenic non-protein coding RNA 2447 ncRNA 401-36 chr10 75556407 75556630 + 3 NA intron (NM_001305581, intron 2 of 6) L1MEf|LINE|L1 4060 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 523-27 chr10 42981362 42981618 + 3 NA promoter-TSS (NR_126352) promoter-TSS (NR_126352) 17 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 561-158 chr5 41474808 41475122 + 3 NA intron (NM_001005473, intron 1 of 2) HERVK3-int|LTR|ERVK 35636 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 530-5 chr1 60669395 60669626 + 3 NA intron (NR_110628, intron 4 of 5) intron (NR_110628, intron 4 of 5) -46825 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 819-37 chr9 94205366 94205788 + 3 NA intron (NR_160773, intron 1 of 2) AluSc|SINE|Alu -1011 NR_046163 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 222-219 chr21 27674829 27674914 + 3 NA Intergenic Intergenic -47508 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 774-40 chr2 22666797 22667272 + 3 NA Intergenic L1MD|LINE|L1 130555 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 499-186 chr4 96772631 96772860 + 3 NA intron (NR_147149, intron 3 of 3) L1MEc|LINE|L1 462042 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 530-197 chr5 46302741 46303013 + 3 NA Intergenic ALR/Alpha|Satellite|centr -606497 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 361-411 chr7 37790262 37790483 + 3 NA Intergenic SATR2|Satellite|Satellite -58225 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 467-214 chr5 11910720 11910983 + 3 NA Intergenic Intergenic -6405 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 893-40 chr7 62673437 62674012 + 3 NA Intergenic ALR/Alpha|Satellite|centr 630332 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 473-132 chr2 52022415 52022709 + 3 NA intron (NR_135237, intron 7 of 10) L2c|LINE|L2 -348086 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 367-338 chr5 67152 67350 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -24917 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 352-188 chr17_GL000205v2_random 19473 19661 + 3 NA Intergenic CER|Satellite|Satellite 38399 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 680-33 chr13 106631255 106631624 + 3 NA non-coding (NR_051977, exon 4 of 4) non-coding (NR_051977, exon 4 of 4) 13629 NR_051977 283483 Hs.651365 NR_051977 ENSG00000272274 LINC00551 - long intergenic non-protein coding RNA 551 ncRNA 329-312 chr2 221550325 221550534 + 3 NA intron (NM_001363748, intron 3 of 17) (GA)n|Simple_repeat|Simple_repeat 21875 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 616-44 chr14 58157491 58157780 + 3 NA Intergenic Intergenic -5422 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 501-39 chr11 85342868 85343158 + 3 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 284257 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 555-78 chr19 36630852 36631196 + 3 NA 3' UTR (NM_032825, exon 5 of 5) 3' UTR (NM_032825, exon 5 of 5) 25711 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 508-24 chr10 21696805 21697058 + 3 NA intron (NM_004641, intron 14 of 23) L2|LINE|L2 162759 NM_001195630 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 356-331 chr3 94689156 94689358 + 3 NA Intergenic L1MA4A|LINE|L1 -249006 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 656-4 chr1 49400603 49401057 + 3 NA intron (NR_046839, intron 3 of 3) L1MA3|LINE|L1 71255 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 793-40 chr5 14976351 14976879 + 3 NA Intergenic Intergenic -104837 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 433-125 chr19 57449221 57449561 + 3 NA Intergenic L1MB2|LINE|L1 7348 NM_020633 57191 Hs.677423 NM_020633 ENSG00000178201 VN1R1 V1RL1|VNR19I1|ZVNH1|ZVNR1 vomeronasal 1 receptor 1 protein-coding 542-180 chr5 131880534 131880946 + 3 NA intron (NM_001303622, intron 8 of 12) L2|LINE|L2 64923 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 569-128 chr4 10205942 10206170 + 3 NA Intergenic Intergenic -89257 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 730-66 chr6 124674981 124675344 + 3 NA intron (NM_001040214, intron 4 of 6) L1MB1|LINE|L1 -287383 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 533-165 chr4 126869889 126870223 + 3 NA Intergenic L1M4|LINE|L1 -762901 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 827-26 chr2 154929953 154930552 + 3 NA Intergenic L1ME3|LINE|L1 231557 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 512-147 chr20 42114133 42114390 + 3 NA intron (NM_133170, intron 23 of 31) MIR|SINE|MIR -495884 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 1080-24 chr8 68946603 68947296 + 3 NA intron (NR_039986, intron 3 of 4) intron (NR_039986, intron 3 of 4) 157241 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 768-9 chr10 75581587 75582147 + 3 NA intron (NM_001305581, intron 2 of 6) L1PA7|LINE|L1 29409 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 486-41 chr10 125287067 125287264 + 3 NA Intergenic Intergenic -126135 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 561-217 chr9 137691940 137692202 + 3 NA intron (NM_001354612, intron 1 of 8) intron (NM_001354612, intron 1 of 8) 73066 NM_001354259 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 475-41 chr11 76309528 76309794 + 3 NA Intergenic Intergenic 71304 NR_130898 5612 Hs.503315 NM_004705 ENSG00000137492 THAP12 DAP4|P52rIPK|PRKRIR|THAP0 THAP domain containing 12 protein-coding 699-42 chr17 58948809 58949051 + 3 NA intron (NM_014906, intron 1 of 6) L1M2c|LINE|L1 157950 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 193-90 chr19 37097248 37097319 + 3 NA non-coding (NR_138039, exon 6 of 6) non-coding (NR_138039, exon 6 of 6) 18850 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 591-54 chr17 62972353 62972712 + 3 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 6297 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 911-26 chr7 46523629 46524010 + 3 NA Intergenic MER41-int|LTR|ERV1 173303 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 495-206 chr5 140779966 140780219 + 3 NA Intergenic AluJb|SINE|Alu -6044 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 556-196 chr6 139331436 139331742 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -39591 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 576-17 chr10 62332352 62332698 + 3 NA Intergenic L1MB5|LINE|L1 -41632 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 753-22 chr14 86208963 86209293 + 3 NA Intergenic Intergenic 274450 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 461-240 chr6 166397434 166397626 + 3 NA Intergenic Intergenic -14517 NR_073093 51660 Hs.172755 NM_016098 ENSG00000060762 MPC1 BRP44L|CGI-129|MPYCD|SLC54A1 mitochondrial pyruvate carrier 1 protein-coding 719-86 chr8 142366800 142367210 + 3 NA intron (NM_001366903, intron 1 of 9) L1MC4a|LINE|L1 36177 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 439-65 chr12 20053531 20053812 + 3 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 38986 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 453-23 chr10 43509437 43509694 + 3 NA Intergenic MLT2A1|LTR|ERVL 58894 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 480-155 chr2 121550374 121550659 + 3 NA intron (NM_015282, intron 2 of 38) L1PA14|LINE|L1 19636 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 407-129 chr19 53633298 53633648 + 3 NA intron (NM_001012728, intron 1 of 2) intron (NM_001012728, intron 1 of 2) 1417 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 455-163 chr3 65592982 65593266 + 3 NA intron (NM_001365904, intron 2 of 24) intron (NM_001365904, intron 2 of 24) -300692 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 798-15 chr14 66440002 66440590 + 3 NA Intergenic L1MEc|LINE|L1 -46075 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 650-6 chr10 36233505 36233894 + 3 NA Intergenic L1MB1|LINE|L1 455397 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 1213-12 chr8 127092814 127093532 + 3 NA TTS (NR_109833) TTS (NR_109833) -10952 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 592-156 chr6 141589029 141589396 + 3 NA Intergenic Intergenic 499587 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 338-352 chr3 129770699 129770912 + 3 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) 23807 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 533-51 chr14 55940081 55940350 + 3 NA Intergenic Intergenic -143541 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 523-125 chr2 34001417 34001665 + 3 NA intron (NR_126403, intron 4 of 5) LTR1B0|LTR|ERV1 -65685 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 633-3 chr1 115584804 115585173 + 3 NA Intergenic Intergenic -56982 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 685-98 chr9 37229148 37229462 + 3 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 108707 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 390-56 chr11 37586323 37586604 + 3 NA Intergenic L1MEc|LINE|L1 -352138 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 717-77 chr7 54240845 54241171 + 3 NA Intergenic Intergenic -89689 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 1012-10 chr5 8887134 8887715 + 3 NA Intergenic L1ME3|LINE|L1 47692 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 158-3 chr1 116033859 116033926 + 3 NA intron (NM_018420, intron 6 of 11) intron (NM_018420, intron 6 of 11) -56616 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 1383-5 chr5 121312842 121313664 + 3 NA Intergenic Intergenic -9297 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 300-344 chr5 6835737 6835854 + 3 NA Intergenic Intergenic -7874 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 486-54 chr12 1772601 1772931 + 3 NA intron (NM_024551, intron 2 of 7).2 intron (NM_024551, intron 2 of 7).2 -47501 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 480-129 chr19 37804976 37805216 + 3 NA Intergenic MIR|SINE|MIR -12315 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 351-399 chr5 141884604 141884739 + 3 NA Intergenic MIRb|SINE|MIR -6261 NM_032420 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 303-401 chr6 108028154 108028323 + 3 NA Intergenic AluY|SINE|Alu 46503 NM_014028 28962 Hs.226780 NM_014028 ENSG00000081087 OSTM1 GIPN|GL|HSPC019|OPTB5 osteoclastogenesis associated transmembrane protein 1 protein-coding 783-32 chr17 63137508 63137928 + 3 NA intron (NM_025185, intron 4 of 25) L2a|LINE|L2 171483 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 572-88 chr2 79102708 79103021 + 3 NA Intergenic Intergenic -14871 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 375-219 chr2 123642582 123642790 + 3 NA Intergenic Intergenic 382488 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 401-286 chr6 77517294 77517485 + 3 NA Intergenic MIRb|SINE|MIR -53367 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 367-72 chr11 37466324 37466476 + 3 NA Intergenic Intergenic -472201 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 636-162 chr9 112127365 112127806 + 3 NA intron (NM_022486, intron 5 of 16) intron (NM_022486, intron 5 of 16) 47712 NM_001282643 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 500-111 chr18 4395140 4395390 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 60001 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 514-20 chr10 20934101 20934436 + 3 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -36666 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 345-245 chr2 31023752 31023940 + 3 NA intron (NM_024572, intron 1 of 14) L2b|LINE|L2 105794 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 495-60 chr14 47053280 47053589 + 3 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 289812 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 556-12 chr1 244674830 244675112 + 3 NA intron (NM_016076, intron 1 of 4) L1MB8|LINE|L1 21845 NM_016076 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 430-230 chr5 7158063 7158264 + 3 NA Intergenic L1PA15-16|LINE|L1 111191 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 442-214 chr4 97380236 97380418 + 3 NA intron (NR_102713, intron 1 of 5) HERVL-int|LTR|ERVL 13401 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 488-233 chr6 56243641 56244012 + 3 NA intron (NM_001318751, intron 1 of 30) MIR|SINE|MIR 3754 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 493-29 chr10 43624451 43624791 + 3 NA Intergenic MER21B|LTR|ERVL -4196 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 753-50 chr5 100527650 100528060 + 3 NA Intergenic L1PB4|LINE|L1 -7519 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 223-84 chr14 49445339 49445501 + 3 NA Intergenic Intergenic 140960 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 693-80 chr5 27439668 27440117 + 3 NA Intergenic LTR12C|LTR|ERV1 -32400 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 524-279 chr9 36709326 36709531 + 3 NA Intergenic Intergenic 114171 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 443-246 chr5 67314248 67314546 + 3 NA Intergenic L1PA15|LINE|L1 -117598 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 883-26 chr3 148477694 148478217 + 3 NA Intergenic L1MEg|LINE|L1 197064 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 530-110 chr19 57543957 57544177 + 3 NA 3' UTR (NM_001277090, exon 5 of 6) 3' UTR (NM_001277090, exon 5 of 6) 15796 NM_001277091 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 533-40 chr12 97830056 97830245 + 3 NA Intergenic Intergenic -73633 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 554-74 chr14 64829384 64829677 + 3 NA intron (NM_001355436, intron 1 of 35) L1MC5a|LINE|L1 -6150 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 904-37 chr7 43627279 43627687 + 3 NA TTS (NM_004760) TTS (NM_004760) 44375 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 494-23 chr10 56073423 56073661 + 3 NA Intergenic Intergenic 287717 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 402-351 chr8 122959954 122960115 + 3 NA intron (NM_001362797, intron 4 of 4) L2b|LINE|L2 65738 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 717-69 chr5 63037951 63038430 + 3 NA Intergenic Intergenic 459371 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 557-213 chr9 18497228 18497541 + 3 NA intron (NM_052866, intron 1 of 12) intron (NM_052866, intron 1 of 12) 23231 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 436-117 chr18 78081337 78081591 + 3 NA Intergenic Intergenic -87737 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 827-29 chr21 28423419 28423811 + 3 NA Intergenic Intergenic -115703 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 428-78 chr15 63650599 63650805 + 3 NA intron (NM_003922, intron 53 of 77) intron (NM_003922, intron 53 of 77) -49875 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 375-311 chr5 6110251 6110528 + 3 NA Intergenic L2a|LINE|L2 226903 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 1126-8 chr3 30481151 30481882 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -37352 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 646-100 chr5 29840990 29841357 + 3 NA Intergenic (CATA)n|Simple_repeat|Simple_repeat -39387 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 325-142 chr12 128458437 128458617 + 3 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 164435 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 445-57 chr13 58229435 58229715 + 3 NA intron (NR_132367, intron 1 of 6) intron (NR_132367, intron 1 of 6) 3542 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 230-134 chr16 843062 843147 + 3 NA Intergenic Intergenic 37661 NM_001013638 388199 Hs.528461 NM_001013638 PRR25 gs64 proline rich 25 protein-coding 439-193 chr3 176279219 176279425 + 3 NA Intergenic L1ME3A|LINE|L1 34771 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 451-97 chr18 4334225 4334523 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 69772 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 498-200 chr4 119718975 119719269 + 3 NA Intergenic L1PB1|LINE|L1 85393 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 400-280 chr5 44049720 44049887 + 3 NA Intergenic Intergenic -338929 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 500-297 chr8 88824151 88824346 + 3 NA Intergenic L1M2b|LINE|L1 -496765 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 494-179 chr3 90296464 90296724 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1188973 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 940-28 chr5 7094547 7095091 + 3 NA Intergenic Intergenic 174535 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 438-116 chr2 50309600 50309832 + 3 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 38038 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 470-136 chr2 143637327 143637565 + 3 NA intron (NM_018460, intron 12 of 13) intron (NM_018460, intron 12 of 13) -299621 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 737-77 chr6 156015762 156016036 + 3 NA Intergenic Intergenic 69102 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 434-111 chr17 72015574 72015797 + 3 NA Intergenic Intergenic 10294 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 653-119 chr8 70848443 70848792 + 3 NA Intergenic L1M2|LINE|L1 179278 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 513-176 chr3 46838949 46839203 + 3 NA Intergenic Intergenic -4981 NR_160554 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 802-60 chr6 23078933 23079460 + 3 NA Intergenic Intergenic -361272 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 473-261 chr7 52257049 52257255 + 3 NA Intergenic Intergenic -778481 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 162-124 chr7 85946766 85946863 + 3 NA Intergenic L1MA3|LINE|L1 525692 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 1242-12 chr6 120455550 120456092 + 3 NA Intergenic Intergenic 440642 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 403-251 chr5 84973364 84973578 + 3 NA Intergenic L1M2|LINE|L1 -588591 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 726-26 chr14 40176029 40176391 + 3 NA Intergenic L1MCa|LINE|L1 -743710 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 642-117 chrX 147154785 147155130 + 3 NA Intergenic Intergenic 34830 NR_031709 100302114 NR_031709 ENSG00000216171 MIR513C MIRN513C|hsa-mir-513c microRNA 513c ncRNA 367-64 chr10 114040866 114041085 + 3 NA Intergenic Intergenic -2891 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 547-36 chr11 60888312 60888705 + 3 NA Intergenic MIR|SINE|MIR 18077 NM_014502 27339 Hs.502705 NM_014502 ENSG00000110107 PRPF19 NMP200|PRP19|PSO4|SNEV|UBOX4|hPSO4 pre-mRNA processing factor 19 protein-coding 519-229 chr8 60016642 60016845 + 3 NA Intergenic Intergenic 264657 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 396-319 chr6 155862196 155862345 + 3 NA Intergenic L1PA16|LINE|L1 -84527 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 300-305 chr4 92226 92422 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -32152 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 374-433 chrX 151292072 151292313 + 3 NA Intergenic L1MA9|LINE|L1 -104403 NM_001363810 203547 Hs.58633 NM_001017980 ENSG00000160131 VMA21 MEAX|XMEA vacuolar ATPase assembly factor VMA21 protein-coding 458-184 chr4 64286160 64286364 + 3 NA intron (NM_001363796, intron 9 of 11) L1MC4|LINE|L1 123188 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 598-67 chr19 56863200 56863437 + 3 NA Intergenic Intergenic 22416 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 689-7 chr1 190930733 190931135 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 297564 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 387-262 chr4 142891577 142891802 + 3 NA Intergenic L1PA15|LINE|L1 -45154 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 668-113 chr9 112965131 112965698 + 3 NA Intergenic L2b|LINE|L2 46778 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 415-221 chr5 111437609 111437816 + 3 NA intron (NM_001744, intron 5 of 10) L2c|LINE|L2 -74514 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 616-142 chr6 66300348 66300711 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 512650 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 524-38 chr11 31016975 31017186 + 3 NA intron (NM_001367979, intron 20 of 38) Charlie7|DNA|hAT-Charlie -24394 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 1120-13 chrX 64051334 64052103 + 3 NA Intergenic L1MA9|LINE|L1 153990 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 351-42 chr10 54099620 54099808 + 3 NA intron (NM_001354411, intron 16 of 34) intron (NM_001354411, intron 16 of 34) -386516 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 792-62 chr8 129639203 129639744 + 3 NA intron (NR_130917, intron 1 of 3) L2|LINE|L2 40766 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 823-12 chr14 66938294 66938663 + 3 NA intron (NM_020806, intron 8 of 22) LTR37-int|LTR|ERV1 -250962 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 618-60 chr2 79441683 79442020 + 3 NA Intergenic L2a|LINE|L2 58993 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 900-7 chr10 100273785 100274335 + 3 NA 3' UTR (NM_001001342, exon 4 of 4) 3' UTR (NM_001001342, exon 4 of 4) -6422 NM_001303407 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19 like cell cycle control factor 1 protein-coding 611-4 chr1 153393205 153393496 + 3 NA intron (NM_001319198, intron 1 of 2) L2c|LINE|L2 -2162 NM_001319196 6279 Hs.416073 NM_002964 ENSG00000143546 S100A8 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 S100 calcium binding protein A8 protein-coding 524-10 chr1 116744529 116744856 + 3 NA Intergenic HERVIP10B3-int|LTR|ERV1 -9738 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 960-20 chr2 9562874 9563340 + 3 NA Intergenic Intergenic -7277 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 289-464 chr8 64974423 64974548 + 3 NA Intergenic L1MA9|LINE|L1 -175748 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 382-314 chr5 13243788 13244034 + 3 NA Intergenic Intergenic -211025 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 651-22 chr11 29040490 29040829 + 3 NA Intergenic Intergenic -553754 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 688-113 chr9 2357743 2358148 + 3 NA Intergenic L2c|LINE|L2 199489 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 771-36 chr18 45198694 45199063 + 3 NA intron (NM_001371319, intron 3 of 23) L1MEi|LINE|L1 -14117 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 348-363 chr4 66333893 66334145 + 3 NA Intergenic Intergenic 57195 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 479-169 chr4 91145208 91145533 + 3 NA intron (NM_001145065, intron 10 of 10) L1PA16|LINE|L1 910339 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 593-103 chr3 181921628 181922004 + 3 NA Intergenic Intergenic -30548 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 251-406 chr8 135021276 135021430 + 3 NA Intergenic GA-rich|Low_complexity|Low_complexity 171418 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 493-78 chr14 37208232 37208424 + 3 NA intron (NM_138731, intron 1 of 13) intron (NM_138731, intron 1 of 13) 10391 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 491-126 chr2 114165899 114166136 + 3 NA Intergenic Intergenic -186033 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 1133 chr11 37759690 37760252 + 3 NA Intergenic Intergenic -178630 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 523-29 chr10 51846460 51846643 + 3 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -146956 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 510-151 chr2 110898520 110898933 + 3 NA intron (NM_001371254, intron 10 of 18) L1MDa|LINE|L1 166153 NM_001371254 506-304 chr9 131800153 131800387 + 3 NA Intergenic Intergenic -60326 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 688-118 chrX 63356322 63356636 + 3 NA Intergenic L1MA6|LINE|L1 -5147 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 620-64 chr2 77332374 77332684 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 189847 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 573-98 chr2 115072317 115072513 + 3 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 7842 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 399-251 chr5 66747266 66747413 + 3 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) -81434 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 405-55 chr12 17401585 17401822 + 3 NA Intergenic Intergenic 187375 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 358-331 chr4 51954652 51954795 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 65640 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 358-239 chr2 191969895 191970041 + 3 NA intron (NM_001305134, intron 7 of 9) Tigger10|DNA|TcMar-Tigger -122880 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 485-227 chr5 98975494 98975758 + 3 NA intron (NR_151718, intron 1 of 3) MSTB|LTR|ERVL-MaLR -45912 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 657-20 chr12 25046650 25047052 + 3 NA intron (NM_001321724, intron 17 of 17) L1M3d|LINE|L1 -5377 NM_001366542 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 490-248 chr6 121682016 121682180 + 3 NA Intergenic Intergenic 246452 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 381-114 chr15 71475645 71475805 + 3 NA intron (NM_024817, intron 6 of 16) AluJr4|SINE|Alu -71511 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 508-164 chr4 43061659 43061972 + 3 NA Intergenic L1MC4|LINE|L1 168549 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 621-61 chr2 172943330 172943669 + 3 NA intron (NM_001282901, intron 1 of 24) MIRb|SINE|MIR 15294 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 412-100 chr15 56232382 56232540 + 3 NA intron (NM_001370561, intron 4 of 11) THE1B-int|LTR|ERVL-MaLR 11418 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 540-179 chr5 148585515 148585802 + 3 NA intron (NM_001040172, intron 1 of 5) MIR3|SINE|MIR 51403 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 690-35 chr14 49631588 49631882 + 3 NA intron (NM_018139, intron 1 of 2) intron (NM_018139, intron 1 of 2) 3495 NM_018139 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 655-11 chr1 187644140 187644436 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 200660 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 398-322 chr7 43031309 43031477 + 3 NA Intergenic L1M6|LINE|L1 -81254 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 618-102 chr5 154226665 154227071 + 3 NA intron (NM_198321, intron 1 of 11) L1ME2|LINE|L1 36135 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 652-96 chr5 36480069 36480445 + 3 NA Intergenic L1MC5a|LINE|L1 -126098 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 434-273 chr7 147794643 147794813 + 3 NA intron (NM_014141, intron 12 of 22) L1MB8|LINE|L1 123049 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 582-169 chr9 89051497 89051930 + 3 NA intron (NM_016848, intron 7 of 11) intron (NM_016848, intron 7 of 11) 60245 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 610-62 chr16 62104593 62104903 + 3 NA Intergenic L1MD|LINE|L1 -68310 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 451-219 chr7 62922491 62922731 + 3 NA Intergenic ALR/Alpha|Satellite|centr 381445 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 364-102 chr12 18052075 18052208 + 3 NA Intergenic L1MA7|LINE|L1 38052 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 1645-3 chr3 44642216 44642993 + 3 NA non-coding (NR_147692, exon 8 of 8) non-coding (NR_147692, exon 8 of 8) -6128 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 556-37 chr11 55627922 55628222 + 3 NA Intergenic L1PA13|LINE|L1 -10286 NM_001004124 81300 NM_001004124 ENSG00000181927 OR4P4 OR4P3P olfactory receptor family 4 subfamily P member 4 protein-coding 516-6 chr1 84096076 84096294 + 3 NA intron (NM_002731, intron 1 of 9) L1ME3|LINE|L1 18106 NM_207578 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 516-151 chr20 13480370 13480577 + 3 NA intron (NM_017714, intron 11 of 13) intron (NM_017714, intron 11 of 13) 158459 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 406-81 chr14 63069247 63069424 + 3 NA Intergenic L1PB1|LINE|L1 -23877 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 223-232 chr3 186993361 186993495 + 3 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -28427 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 497-289 chr8 114612266 114612516 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR 1055622 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 486-122 chr18 13993164 13993463 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -77606 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 445-127 chr2 106000251 106000504 + 3 NA Intergenic Intergenic -65311 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 817-9 chr10 78885715 78886212 + 3 NA Intergenic HAL1b|LINE|L1 181485 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 908-5 chr11 54768002 54768602 + 3 NA Intergenic ALR/Alpha|Satellite|centr 61470 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 1016-13 chr21 28664235 28664682 + 3 NA Intergenic Intergenic 125140 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 469-38 chr10 89342963 89343149 + 3 NA Intergenic MER39|LTR|ERV1 10527 NM_001031683 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 339-256 chr2 63094082 63094322 + 3 NA Intergenic L2a|LINE|L2 25340 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 399-215 chr3 134121658 134121838 + 3 NA Intergenic L1PB4|LINE|L1 -64100 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 555-210 chr8 129664794 129665095 + 3 NA intron (NR_130917, intron 1 of 3) L2a|LINE|L2 15295 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 436-150 chr2 198919795 198920028 + 3 NA Intergenic L1M4b|LINE|L1 538028 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 1041-3 chr16 12701064 12701704 + 3 NA intron (NM_001099455, intron 2 of 2) AluSz|SINE|Alu -18937 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 530-7 chr1 69846526 69846885 + 3 NA intron (NM_001370785, intron 7 of 26) intron (NM_001370785, intron 7 of 26) -72617 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 318-404 chr4 72320015 72320247 + 3 NA intron (NM_014243, intron 7 of 21) intron (NM_014243, intron 7 of 21) 249090 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 281-157 chr17 30096510 30096654 + 3 NA intron (NM_198529, intron 22 of 22) intron (NM_198529, intron 22 of 22) -20225 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 551-43 chr12 37950654 37950915 + 3 NA Intergenic ALR/Alpha|Satellite|centr -365990 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 756-35 chr21 15534439 15534718 + 3 NA Intergenic LTR50|LTR|ERVL -195356 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 406-122 chr18 72048146 72048408 + 3 NA Intergenic L1M3|LINE|L1 -266051 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 564-33 chr11 81432462 81432686 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 458262 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 1162-2 chr19 27355988 27356580 + 3 NA Intergenic ALR/Alpha|Satellite|centr -437147 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 893-29 chr3 55470610 55471314 + 3 NA intron (NM_003392, intron 4 of 4) MIRb|SINE|MIR 10436 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 428-163 chr21 30288671 30288895 + 3 NA TTS (NM_001128598) TTS (NM_001128598) 731 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 459-206 chr4 42760711 42760924 + 3 NA Intergenic FLAM_A|SINE|Alu -103712 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 376-419 chr8 142844337 142844572 + 3 NA intron (NM_002066, intron 3 of 3) L1ME3A|LINE|L1 9653 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 522-268 chr9 26824912 26825091 + 3 NA Intergenic HAL1M8|LINE|L1 67801 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 486-127 chr19 44010104 44010428 + 3 NA intron (NM_006300, intron 4 of 4) intron (NM_006300, intron 4 of 4) 7309 NM_006300 7773 Hs.193583 NM_006300 ENSG00000159882 ZNF230 FDZF2 zinc finger protein 230 protein-coding 550-149 chr3 100924993 100925311 + 3 NA intron (NM_001349332, intron 2 of 35) intron (NM_001349332, intron 2 of 35) 68338 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 603-163 chr8 80598672 80598984 + 3 NA Intergenic L1MC4|LINE|L1 112602 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 421-5 chr1 30092002 30092238 + 3 NA Intergenic L2a|LINE|L2 -54508 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 266-156 chr18 51235808 51235907 + 3 NA Intergenic Intergenic -38176 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 460-17 chr1 191398561 191398811 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -170188 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 524-104 chr2 1008408 1008683 + 3 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -57153 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 490-260 chr7 36086880 36087161 + 3 NA Intergenic Intergenic -8290 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 658-132 chr9 9316731 9317053 + 3 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 458874 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 399-257 chr5 126170084 126170359 + 3 NA Intergenic Intergenic -9356 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 749-16 chr10 47115561 47115935 + 3 NA Intergenic L1MEi|LINE|L1 -184449 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 439-139 chr2 123222798 123223005 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -149420 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 561-106 chr2 188809159 188809503 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -19208 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 945-8 chr16 71223208 71223841 + 3 NA intron (NM_001198543, intron 1 of 18) L1PB2|LINE|L1 7198 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 625-7 chr1 177733416 177733876 + 3 NA Intergenic Intergenic 33122 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 696-63 chr20 13252199 13252633 + 3 NA intron (NM_080826, intron 1 of 5) intron (NM_080826, intron 1 of 5) -12729 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 865-9 chr10 105713285 105713642 + 3 NA intron (NR_120625, intron 3 of 3) AluJr|SINE|Alu 106870 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 1060-21 chr6 56039948 56040496 + 3 NA Intergenic MER103C|DNA|hAT-Charlie 51440 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 430-185 chr3 27918139 27918325 + 3 NA Intergenic L1MC4a|LINE|L1 -84096 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 547-211 chr6 169473502 169473818 + 3 NA intron (NR_146875, intron 19 of 20) MLT1K|LTR|ERVL-MaLR -219546 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 271-435 chr8 75312949 75313055 + 3 NA Intergenic Intergenic -34113 NR_103849 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 463-169 chr21 19761059 19761245 + 3 NA Intergenic Intergenic 138603 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 431-199 chr4 71090419 71090685 + 3 NA Intergenic Intergenic -96707 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 645-47 chr18 7506110 7506417 + 3 NA Intergenic Intergenic -45257 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 414-139 chr19 43943280 43943547 + 3 NA Intergenic L1ME1|LINE|L1 -7810 NM_001297588 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 717-61 chr4 30489609 30490003 + 3 NA Intergenic AluSx3|SINE|Alu -230563 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 748-9 chr1 211034656 211035030 + 3 NA intron (NM_002238, intron 5 of 10) intron (NM_002238, intron 5 of 10) 98531 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 485-46 chr11 77426382 77426719 + 3 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 47513 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 220-253 chr4 49042163 49042330 + 3 NA intron (NM_001286791, intron 13 of 15) MLT1G1|LTR|ERVL-MaLR 55604 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 730-2 chr1 69434095 69434643 + 3 NA intron (NR_147164, intron 1 of 1) intron (NR_147164, intron 1 of 1) 1114 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 476-45 chr11 24864171 24864370 + 3 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 367217 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 574-44 chr15 61788616 61788928 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 58854 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 465-190 chr3 163595979 163596173 + 3 NA Intergenic Intergenic -292775 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 557-219 chr9 89787624 89787819 + 3 NA Intergenic L1MEf|LINE|L1 147938 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 502-58 chr11 109695968 109696271 + 3 NA Intergenic L1PA16|LINE|L1 273929 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 596-57 chr14 20517593 20517853 + 3 NA Intergenic Intergenic 7251 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 495-173 chr4 52654881 52655180 + 3 NA intron (NM_001286767, intron 1 of 8) intron (NM_001286767, intron 1 of 8) 1509 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 367-241 chr2 226729240 226729390 + 3 NA Intergenic Intergenic 69475 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 508-187 chr5 62692611 62692882 + 3 NA Intergenic Intergenic 113927 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 886-27 chr5 3070512 3070982 + 3 NA Intergenic AluSx|SINE|Alu -107088 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 664-46 chr16 79954993 79955337 + 3 NA Intergenic Intergenic 159916 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 682-96 chr7 49552177 49552674 + 3 NA Intergenic Intergenic -221213 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 280-421 chr8 122070231 122070396 + 3 NA Intergenic MER4D1|LTR|ERV1 -428873 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 220-284 chr5 41050631 41050732 + 3 NA intron (NM_173489, intron 13 of 41) intron (NM_173489, intron 13 of 41) 20661 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 660-48 chr2 201054745 201055117 + 3 NA intron (NM_001321629, intron 1 of 12) FLAM_C|SINE|Alu 16740 NM_001321629 285172 Hs.24701 NM_173822 ENSG00000155744 FAM126B HYCC2 family with sequence similarity 126 member B protein-coding 656-32 chr12 14308523 14308839 + 3 NA Intergenic LTR37-int|LTR|ERV1 -56951 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 359-440 chr7 13118004 13118251 + 3 NA Intergenic Intergenic 430494 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 481-230 chr4 114945630 114945860 + 3 NA intron (NM_022569, intron 4 of 13) intron (NM_022569, intron 4 of 13) 167875 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 563-26 chr10 111211969 111212191 + 3 NA Intergenic L1MEd|LINE|L1 97789 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 596-101 chr2 138244612 138244979 + 3 NA Intergenic LTR8B|LTR|ERV1 142911 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 1013-21 chr8 141979084 141979715 + 3 NA Intergenic Intergenic -193086 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 271-67 chr11 28444109 28444255 + 3 NA Intergenic L1ME2|LINE|L1 33366 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 712-46 chr2 124850700 124851148 + 3 NA intron (NM_130773, intron 19 of 23) L2|LINE|L2 825637 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 710-95 chr8 127004717 127005106 + 3 NA Intergenic Intergenic -8243 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 410-332 chr9 72925808 72926038 + 3 NA intron (NM_000689, intron 5 of 12) intron (NM_000689, intron 5 of 12) 27130 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 333-624 chrX 72099154 72099280 + 3 NA intron (NM_001013627, intron 1 of 7) MER33|DNA|hAT-Charlie 32698 NM_001024455 340526 Hs.512180 NM_001024455 ENSG00000242732 RTL5 6430402L03Rik|MAR5|MART5|RGAG4|SIRH8 retrotransposon Gag like 5 protein-coding 490-2 chr1 18500694 18500954 + 3 NA Intergenic L1MC4|LINE|L1 19894 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 455-101 chr17 74129247 74129435 + 3 NA Intergenic Intergenic -74337 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 349-94 chr11 21953831 21953980 + 3 NA Intergenic L1MA2|LINE|L1 -239180 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 456-64 chr12 65561801 65562061 + 3 NA intron (NR_120434, intron 4 of 4) intron (NR_120434, intron 4 of 4) -4620 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 1056-11 chr4 43057887 43058404 + 3 NA Intergenic L1M1|LINE|L1 164879 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 672-68 chr22 46421762 46422111 + 3 NA intron (NM_014246, intron 5 of 34) intron (NM_014246, intron 5 of 34) 86222 NM_001282782 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 563-163 chr6 142462252 142462557 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 160397 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 371-344 chr6 147045968 147046193 + 3 NA intron (NR_034115, intron 5 of 10) L2a|LINE|L2 -112845 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 416-143 chr17 63281508 63281747 + 3 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 158640 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 903-34 chr7 4848351 4848852 + 3 NA intron (NM_018059, intron 2 of 14) HAL1|LINE|L1 -11151 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 407-263 chr5 145431550 145431746 + 3 NA Intergenic L1MC4|LINE|L1 403694 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 470-79 chr14 96161324 96161576 + 3 NA Intergenic Intergenic -43348 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 551-52 chr14 62210178 62210545 + 3 NA Intergenic MER31-int|LTR|ERV1 -70388 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 685-48 chr2 126228825 126229122 + 3 NA Intergenic L1MEc|LINE|L1 -110988 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 543-94 chr16 75970063 75970322 + 3 NA Intergenic Intergenic -243702 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 352-408 chr5 28534339 28534564 + 3 NA Intergenic L1M2|LINE|L1 -246786 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 493-251 chr5 163649697 163649911 + 3 NA Intergenic MER54B|LTR|ERVL 144185 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 899-35 chr8 140882398 140882763 + 3 NA intron (NR_148037, intron 4 of 34) intron (NR_148037, intron 4 of 34) 118424 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 693-7 chr1 167091812 167092199 + 3 NA Intergenic L1ME4b|LINE|L1 -1628 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 446-245 chr5 101924962 101925215 + 3 NA Intergenic LTR56|LTR|ERV1 371196 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 985-10 chr17 72795781 72796302 + 3 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -155569 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 459-199 chr3 187821837 187822031 + 3 NA Intergenic Intergenic -76466 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 380-356 chr7 14937165 14937387 + 3 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) -33620 NM_001350705 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 245-110 chr12 129262780 129262943 + 3 NA intron (NM_133448, intron 4 of 8) intron (NM_133448, intron 4 of 8) 54260 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 378-31 chr1 177862345 177862615 + 3 NA Intergenic L2a|LINE|L2 107442 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 285-396 chr8 14698236 14698346 + 3 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 155219 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 168-39 chr16 11961234 11961308 + 3 NA intron (NM_001355514, intron 2 of 8) intron (NM_001355514, intron 2 of 8) 3167 NM_001355514 729978 Hs.730028 NM_001355514 ENSG00000234719 NPIPB2 - nuclear pore complex interacting protein family, member B2 protein-coding 483-276 chr8 129142706 129143023 + 3 NA Intergenic Intergenic 98376 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 525-113 chr2 30511342 30511673 + 3 NA intron (NM_001304445, intron 3 of 7) MER3|DNA|hAT-Charlie 64261 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 534-149 chr21 32908185 32908516 + 3 NA Intergenic Intergenic -50538 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 952-10 chr14 60066713 60067189 + 3 NA Intergenic Intergenic -24960 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 290-229 chr2 189642902 189643039 + 3 NA Intergenic Intergenic -18429 NM_001353493 110599588 Hs.101364 NM_001353493 ENSG00000286053 ASDURF ASNSD1|ASNSD1-SEP|NS3TP1 ASNSD1 upstream reading frame protein-coding 463-146 chr2 129814958 129815118 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 62453 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 489-139 chr2 102582310 102582512 + 3 NA Intergenic L1MEf|LINE|L1 -37142 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 485-31 chr10 43473275 43473548 + 3 NA intron (NM_001355446, intron 2 of 4) intron (NM_001355446, intron 2 of 4) 36300 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 694-71 chr2 196653245 196653686 + 3 NA intron (NM_001353339, intron 2 of 22) MSTB-int|LTR|ERVL-MaLR 13750 NM_001353339 284992 Hs.132519 NM_173466 ENSG00000144395 CCDC150 - coiled-coil domain containing 150 protein-coding 413-120 chr18 10944569 10944808 + 3 NA intron (NM_022068, intron 3 of 51) L1MEd|LINE|L1 -185039 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 475-126 chr2 37553009 37553181 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 119104 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 584-139 chr5 104670372 104670735 + 3 NA Intergenic Intergenic -428921 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 405-90 chr14 87312031 87312179 + 3 NA Intergenic Intergenic 343189 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 515-6 chr1 67272434 67272712 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -34791 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 285-232 chr2 215564329 215564495 + 3 NA Intergenic Intergenic 110705 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 229-130 chr15 97227640 97227745 + 3 NA Intergenic L1M4a1|LINE|L1 294119 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 473-115 chr18 77564329 77564617 + 3 NA Intergenic L1MC4|LINE|L1 314625 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 402-348 chr8 119186488 119186759 + 3 NA Intergenic L1ME4c|LINE|L1 -21740 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 469-25 chr10 17262977 17263260 + 3 NA Intergenic Intergenic -33133 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 276-109 chr12 38020168 38020297 + 3 NA Intergenic ALR/Alpha|Satellite|centr -296542 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 408-344 chr8 125947068 125947260 + 3 NA intron (NR_038446, intron 1 of 1) MER92-int|LTR|ERV1 4033 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 495-153 chr3 44187630 44187934 + 3 NA Intergenic Intergenic -54104 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 471-187 chr4 43155787 43156103 + 3 NA Intergenic L1PA15|LINE|L1 262679 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 633-71 chr2 221826668 221827077 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -252670 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 475-240 chr6 47902128 47902288 + 3 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 115140 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 428-167 chr22 34938443 34938653 + 3 NA intron (NR_138042, intron 1 of 4) L1MA6|LINE|L1 59368 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 629-147 chrX 85579562 85579814 + 3 NA Intergenic Intergenic -200023 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 376-241 chr3 43633363 43633551 + 3 NA intron (NM_001346469, intron 1 of 11) intron (NM_001346469, intron 1 of 11) -11380 NM_001204831 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 410-83 chr13 107315617 107315890 + 3 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 5210 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 507-107 chr19 9196227 9196580 + 3 NA Intergenic Intergenic 10809 NM_175883 162998 Hs.531755 NM_175883 ENSG00000188000 OR7D2 HTPCRH03|OR19-10|OR19-4 olfactory receptor family 7 subfamily D member 2 protein-coding 452-161 chr22 25908912 25909101 + 3 NA intron (NM_001318245, intron 32 of 43) L1ME3G|LINE|L1 166818 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 648-17 chr10 99309592 99309872 + 3 NA Intergenic Intergenic -19367 NM_001345888 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 401-100 chr15 57005893 57006072 + 3 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 86537 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 465-17 chr1 246991438 246991602 + 3 NA intron (NR_037892, intron 3 of 5) L1MA2|LINE|L1 16537 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 277-301 chr4 176210299 176210452 + 3 NA Intergenic L2c|LINE|L2 -14790 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 756-8 chr11 114047339 114047741 + 3 NA Intergenic MER66B|LTR|ERV1 -12171 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 347-74 chr11 69519837 69520006 + 3 NA Intergenic AluJb|SINE|Alu 34360 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 495-135 chr20 43062836 43063056 + 3 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 94203 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 409-287 chr7 158542033 158542240 + 3 NA promoter-TSS (NM_001308268) promoter-TSS (NM_001308268) -360 NM_001308268 5799 Hs.490789 NM_002847 ENSG00000155093 PTPRN2 IA-2beta|IAR|ICAAR|PTPRP|R-PTP-N2 protein tyrosine phosphatase receptor type N2 protein-coding 587-116 chr4 36666614 36667024 + 3 NA Intergenic Intergenic -24919 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 405-359 chrX 128665141 128665362 + 3 NA Intergenic Intergenic -612848 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 425-326 chr9 103522224 103522418 + 3 NA Intergenic MIR|SINE|MIR -197288 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 538-227 chr8 10671096 10671378 + 3 NA Intergenic Intergenic -1391 NM_001040032 203076 Hs.371776 NM_001040032 ENSG00000171060 C8orf74 - chromosome 8 open reading frame 74 protein-coding 525-268 chr8 120136052 120136323 + 3 NA intron (NM_021110, intron 1 of 47) L1MEb|LINE|L1 11085 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 524-208 chr5 113493220 113493514 + 3 NA Intergenic MER131|DNA?|DNA? -4914 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 434-172 chr22 44376863 44377103 + 3 NA Intergenic L1MEg|LINE|L1 -64032 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 522-130 chr2 75407744 75408052 + 3 NA Intergenic Intergenic -116170 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 357-265 chr3 40863743 40863937 + 3 NA Intergenic AluY|SINE|Alu -335665 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 630-142 chr8 118624050 118624444 + 3 NA intron (NR_038210, intron 2 of 4) L1M5|LINE|L1 -2284 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 386-301 chr5 144021938 144022145 + 3 NA Intergenic Intergenic 148618 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 453-148 chr22 25436697 25436913 + 3 NA Intergenic Intergenic -11282 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 426-132 chr2 50096780 50097028 + 3 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -122701 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 621-9 chr1 189124626 189124979 + 3 NA Intergenic Intergenic 1351208 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 287-344 chr6 25350943 25351099 + 3 NA intron (NM_001173977, intron 2 of 36) intron (NM_001173977, intron 2 of 36) 71647 NM_001173977 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 728-6 chr1 160891743 160892236 + 3 NA Intergenic L1PREC2|LINE|L1 -6809 NM_017625 55600 Hs.50813 NM_017625 ENSG00000179914 ITLN1 HL-1|HL1|INTL|ITLN|LFR|hIntL|omentin intelectin 1 protein-coding 602-27 chr12 133161320 133161686 + 3 NA Intergenic L1M4|LINE|L1 -19992 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 550-192 chr5 164764477 164764694 + 3 NA Intergenic Intergenic 294306 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 521-53 chr11 86709576 86709820 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger -37062 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 398-9 chr1 88368825 88368986 + 3 NA Intergenic AluSz|SINE|Alu -315239 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 435-160 chr3 138646208 138646453 + 3 NA Intergenic L1M2b|LINE|L1 37281 NM_018147 55179 Hs.173438 NM_018147 ENSG00000158234 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 441-7 chr1 83648066 83648407 + 3 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 202182 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 463-203 chr4 2293802 2293980 + 3 NA intron (NM_020972, intron 8 of 12) L1M5|LINE|L1 -31782 NM_006454 10608 Hs.655020 NM_006454 ENSG00000123933 MXD4 MAD4|MST149|MSTP149|bHLHc12 MAX dimerization protein 4 protein-coding 502-63 chr12 28465311 28465531 + 3 NA intron (NM_001352082, intron 12 of 13) L1MA2|LINE|L1 -274683 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 574-53 chr17 34462735 34463076 + 3 NA Intergenic Intergenic -99672 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 789-32 chr22 48391783 48392239 + 3 NA Intergenic Intergenic -97542 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 884-14 chr16 49546598 49547131 + 3 NA intron (NM_001271620, intron 5 of 7) intron (NM_001271620, intron 5 of 7) -28279 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 388-190 chr20 55632319 55632593 + 3 NA Intergenic Intergenic -205259 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 552-149 chr4 14254279 14254551 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR 142447 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 558-161 chr4 100491099 100491323 + 3 NA intron (NM_001159694, intron 1 of 10) L1M2|LINE|L1 26811 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 643-75 chr3 124212312 124212642 + 3 NA intron (NM_001024660, intron 1 of 59) L1ME4a|LINE|L1 79548 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 312-141 chr14 47939243 47939400 + 3 NA Intergenic MER57-int|LTR|ERV1 -144307 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 417-160 chr2 210390759 210390992 + 3 NA intron (NR_110606, intron 1 of 4) intron (NR_110606, intron 1 of 4) 66163 NR_110606 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 990-19 chr4 96545740 96546186 + 3 NA intron (NR_147149, intron 2 of 3) MIR|SINE|MIR 235260 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 872-13 chr12 45064469 45065203 + 3 NA non-coding (NR_026583, exon 1 of 1) non-coding (NR_026583, exon 1 of 1) 575 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 454-22 chr10 29093787 29094001 + 3 NA Intergenic Intergenic -195176 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 608-119 chr5 11034189 11034484 + 3 NA intron (NM_001288715, intron 15 of 20) LTR37-int|LTR|ERV1 -273102 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 454-234 chr4 66954369 66954596 + 3 NA Intergenic Intergenic 467518 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 1061-5 chr15 57006994 57007427 + 3 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 87765 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 421-280 chr7 40453090 40453271 + 3 NA intron (NM_024728, intron 10 of 14) L1MEf|LINE|L1 318204 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 313-160 chr14 86424076 86424224 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie -481628 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 669-91 chr5 31845461 31845746 + 3 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) 90556 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 338-596 chr9 93331241 93331406 + 3 NA 3' UTR (NM_001368813, exon 3 of 3) 3' UTR (NM_001368813, exon 3 of 3) 14980 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 502-30 chr10 25310417 25310674 + 3 NA intron (NM_020752, intron 2 of 10) L1MB3|LINE|L1 -134269 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 481-95 chr15 26963037 26963237 + 3 NA Intergenic L1MC4a|LINE|L1 -8044 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 499-170 chr3 83808688 83809028 + 3 NA Intergenic Intergenic 1060717 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 405-290 chr6 141534865 141535008 + 3 NA Intergenic L1MD2|LINE|L1 553863 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 465-314 chr9 29557754 29557935 + 3 NA Intergenic Intergenic -344243 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 576-59 chr16 25625547 25625933 + 3 NA Intergenic Intergenic -66219 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 477-66 chr11 133033219 133033393 + 3 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -89538 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 629-53 chr19 12240676 12241090 + 3 NA Intergenic L1MB4|LINE|L1 45868 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 887-13 chr17 71053970 71054334 + 3 NA Intergenic Intergenic 148027 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 577-19 chr1 211480218 211480450 + 3 NA intron (NM_183059, intron 2 of 2) LTR103_Mam|LTR|ERV1? 12583 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 733-2 chr1 36795224 36795648 + 3 NA TTS (NM_000831) TTS (NM_000831) 239079 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 483-139 chr20 31228762 31228944 + 3 NA Intergenic Intergenic -28811 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 548-34 chr11 27251059 27251385 + 3 NA Intergenic Intergenic -31109 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 185-35 chr11 42980472 42980580 + 3 NA Intergenic Intergenic 288843 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 427-170 chr3 174720885 174721174 + 3 NA Intergenic Intergenic -138305 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 352-381 chr4 98312124 98312263 + 3 NA intron (NM_021159, intron 2 of 14) intron (NM_021159, intron 2 of 14) 50809 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 586-33 chr11 60531845 60532214 + 3 NA intron (NM_001278320, intron 4 of 4) L1M4a2|LINE|L1 16637 NM_001278320 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 611-102 chr3 144190634 144191053 + 3 NA Intergenic L1MA3|LINE|L1 217762 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 373-342 chr5 159094277 159094452 + 3 NA intron (NM_001324107, intron 4 of 15) intron (NM_001324107, intron 4 of 15) 3592 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 470-233 chr5 173594881 173595070 + 3 NA Intergenic Intergenic 15341 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 414-78 chr13 33777864 33778059 + 3 NA Intergenic Intergenic -40108 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 554-65 chr12 127821438 127821683 + 3 NA Intergenic Intergenic -60057 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 350-410 chr5 122273394 122273592 + 3 NA Intergenic Intergenic -38198 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 1004-3 chr1 218608523 218609037 + 3 NA intron (NR_031644, intron 3 of 6) MER20|DNA|hAT-Charlie 98685 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 656-112 chr6 140407882 140408324 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 202851 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 720-81 chr7 12056458 12056833 + 3 NA Intergenic AluSz|SINE|Alu -154649 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 530-204 chr5 107172160 107172454 + 3 NA Intergenic Intergenic -161293 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 447-4 chr1 71794771 71795049 + 3 NA intron (NR_046218, intron 2 of 2) L1ME3Cz|LINE|L1 42102 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 608-127 chr5 144067598 144067961 + 3 NA Intergenic Intergenic 102880 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 470-9 chr1 163767916 163768198 + 3 NA Intergenic L1MEd|LINE|L1 -344866 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 513-64 chr13 32664313 32664547 + 3 NA intron (NM_015032, intron 6 of 34) L1ME3C|LINE|L1 77978 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 467-135 chr2 89785453 89785631 + 3 NA Intergenic Intergenic -147635 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 198-184 chr4 112309928 112310025 + 3 NA intron (NM_001102406, intron 1 of 15) L2a|LINE|L2 12607 NM_001102406 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 501-144 chr21 28529469 28529786 + 3 NA Intergenic Intergenic -9691 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 315-221 chr2 7494530 7494660 + 3 NA Intergenic L1M5|LINE|L1 73334 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 616-116 chr4 24266741 24266970 + 3 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 206050 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 442-19 chr1 218479122 218479375 + 3 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) -30847 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 521-214 chr6 56422346 56422645 + 3 NA Intergenic L1PB2|LINE|L1 -28367 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 321-576 chr8 123914073 123914233 + 3 NA intron (NM_001039112, intron 1 of 40) MER3|DNA|hAT-Charlie 62166 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 317-168 chr15 82669172 82669304 + 3 NA intron (NM_001278512, intron 14 of 26) L1MA3|LINE|L1 -6563 NM_001348441 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 EIEE48|NAPTB adaptor related protein complex 3 subunit beta 2 protein-coding 852-6 chr1 188775142 188775493 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR 1331689 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 471-265 chr8 87473045 87473332 + 3 NA Intergenic Intergenic 400827 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 629-103 chr5 133399814 133400218 + 3 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 27690 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 470-201 chr4 115499997 115500290 + 3 NA Intergenic (TTATT)n|Simple_repeat|Simple_repeat -386523 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 702-8 chr10 64009559 64010021 + 3 NA Intergenic L2c|LINE|L2 -487900 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 631-6 chr1 69605839 69606189 + 3 NA intron (NM_001366842, intron 1 of 7) intron (NM_001366842, intron 1 of 7) 36673 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 691-96 chr9 138037722 138038265 + 3 NA intron (NM_001243812, intron 20 of 45) L1MC5a|LINE|L1 7078 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 307-85 chr11 77005739 77005855 + 3 NA intron (NM_001300953, intron 6 of 9) MLT1C|LTR|ERVL-MaLR -28601 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 509-108 chr2 29909006 29909240 + 3 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 12463 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 484-151 chr2 237148135 237148369 + 3 NA Intergenic Intergenic 62363 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 803-5 chr10 64776132 64776658 + 3 NA Intergenic Intergenic -49133 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 454-255 chr5 30730161 30730453 + 3 NA Intergenic L1MCb|LINE|L1 -463379 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 555-81 chr19 57420023 57420227 + 3 NA exon (NM_006959, exon 3 of 3) exon (NM_006959, exon 3 of 3) 8964 NM_006959 7565 Hs.729403 NM_006959 ENSG00000186272 ZNF17 HPF3|KOX10 zinc finger protein 17 protein-coding 609-114 chr5 160609024 160609261 + 3 NA intron (NM_001366652, intron 17 of 24) MER113|DNA|hAT-Charlie 76249 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 467-124 chr19 36647425 36647601 + 3 NA intron (NM_001322821, intron 4 of 5) AluSx1|SINE|Alu 19324 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 385-206 chr20 15166359 15166639 + 3 NA intron (NM_001351663, intron 5 of 17) MLT1A0|LTR|ERVL-MaLR -30341 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 961-16 chr5 179304643 179305302 + 3 NA intron (NM_014244, intron 2 of 21) L1MEf|LINE|L1 40489 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 656-80 chr3 88823224 88823722 + 3 NA Intergenic Intergenic -284148 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 305-384 chr4 60340214 60340340 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -582342 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 562-106 chr2 70350717 70350971 + 3 NA Intergenic L1MA9|LINE|L1 -48777 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 413-132 chr2 27590399 27590611 + 3 NA intron (NM_001271286, intron 2 of 12) L1ME1|LINE|L1 7463 NM_032434 84450 Hs.529178 NM_032434 ENSG00000243943 ZNF512 - zinc finger protein 512 protein-coding 545-180 chr5 32672284 32672488 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -18486 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 530-161 chr3 26072322 26072655 + 3 NA Intergenic MIRb|SINE|MIR -198793 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 867-17 chr16 52660997 52661376 + 3 NA Intergenic L1MA5A|LINE|L1 -54211 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 199-182 chr4 94660595 94660709 + 3 NA intron (NM_006457, intron 11 of 12) L2a|LINE|L2 96881 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 474-267 chr7 46966372 46966563 + 3 NA Intergenic L1MB5|LINE|L1 -269345 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 556-175 chr5 75126322 75126702 + 3 NA intron (NM_001164443, intron 16 of 24) L1ME1|LINE|L1 -73954 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 1327-4 chr19 37635251 37635963 + 3 NA exon (NM_001320671, exon 6 of 6) exon (NM_001320671, exon 6 of 6) 19858 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 781-25 chr16 73584001 73584587 + 3 NA Intergenic L1MEd|LINE|L1 197489 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 575-76 chr19 4554718 4554998 + 3 NA intron (NM_032108, intron 8 of 16) intron (NM_032108, intron 8 of 16) 4826 NM_032108 10501 Hs.465642 NM_020241 ENSG00000167680 SEMA6B SEM-SEMA-Y|SEMA-VIB|SEMAN|semaZ semaphorin 6B protein-coding 480-5 chr1 49767578 49767799 + 3 NA intron (NM_001323575, intron 2 of 12) L1PA15-16|LINE|L1 256266 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 521-72 chr12 132933096 132933310 + 3 NA intron (NM_001164715, intron 2 of 4) intron (NM_001164715, intron 2 of 4) 23103 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 444-135 chr20 1057283 1057503 + 3 NA Intergenic MER106A|DNA|hAT-Charlie -55082 NM_001040007 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 426-314 chr9 88233883 88234132 + 3 NA Intergenic Intergenic -95526 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 458-39 chr11 89455106 89455378 + 3 NA intron (NM_001291929, intron 1 of 16) intron (NM_001291929, intron 1 of 16) 35518 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 334-357 chr3 103724047 103724250 + 3 NA Intergenic L1MD1|LINE|L1 -200032 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 601-133 chr6 62030712 62031173 + 3 NA intron (NR_146874, intron 3 of 13) L1ME1|LINE|L1 255283 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 1027-9 chr2 80282067 80282971 + 3 NA intron (NM_001282598, intron 7 of 17) L1MC5|LINE|L1 22233 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 754-47 chr21 23097015 23097370 + 3 NA Intergenic Intergenic 17908 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 387-68 chr11 99093028 99093254 + 3 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 72192 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 827-3 chr10 30769949 30770505 + 3 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 47008 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 630-44 chr2 4372310 4372742 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 283696 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 510-136 chr2 42551179 42551464 + 3 NA intron (NM_001282755, intron 2 of 17) AluSx|SINE|Alu -16724 NM_001282756 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 721-48 chr21 24765976 24766329 + 3 NA Intergenic Intergenic -74398 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 505-115 chr17 53038789 53039103 + 3 NA Intergenic L1MD|LINE|L1 53441 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 1109-10 chr8 54753493 54754302 + 3 NA Intergenic L2c|LINE|L2 137801 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 449-149 chr21 17416803 17416975 + 3 NA Intergenic MIRb|SINE|MIR -22001 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 580-155 chr5 104923732 104923927 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -175645 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 651-6 chr1 174211241 174211583 + 3 NA intron (NM_001366445, intron 1 of 13) L1MA3|LINE|L1 51892 NM_001366446 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 577-136 chr4 111468409 111468616 + 3 NA Intergenic Intergenic -607865 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 607-138 chr7 78699520 78699832 + 3 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -309312 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 795-47 chr6 119976842 119977158 + 3 NA Intergenic Intergenic -38179 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 516-170 chr3 58780335 58780528 + 3 NA intron (NM_001351532, intron 14 of 14) L1MA4A|LINE|L1 -44040 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 393-297 chr5 178965156 178965330 + 3 NA exon (NM_182594, exon 5 of 5) exon (NM_182594, exon 5 of 5) 24045 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 587-4 chr1 53934105 53934400 + 3 NA intron (NM_016126, intron 2 of 5) L1ME2|LINE|L1 11571 NR_133632 51668 Hs.525462 NM_016126 ENSG00000081870 HSPB11 C1orf41|HSPCO34|IFT25|PP25 heat shock protein family B (small) member 11 protein-coding 624-94 chr5 16104020 16104338 + 3 NA intron (NM_001102562, intron 2 of 3) MIR3|SINE|MIR 75612 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 332-526 chr8 80346296 80346522 + 3 NA Intergenic L1ME1|LINE|L1 105020 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 406-168 chr20 48107520 48107786 + 3 NA Intergenic MIRb|SINE|MIR -117536 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 184-190 chrX 83594748 83594855 + 3 NA Intergenic Intergenic 86511 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 570-140 chr3 182611792 182612057 + 3 NA Intergenic Intergenic -104800 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 1122 chr1 239222762 239223460 + 3 NA Intergenic MER4CL34|LTR|ERV1 -163457 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 421-210 chr4 48235693 48235907 + 3 NA intron (NM_003215, intron 1 of 17) MIR|SINE|MIR 34038 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 606-83 chr2 79480623 79481018 + 3 NA Intergenic HAL1ME|LINE|L1 20024 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 436-90 chr14 98531549 98531747 + 3 NA Intergenic Intergenic -179965 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 279-366 chr6 81011288 81011465 + 3 NA Intergenic Intergenic 741305 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 281-454 chr9 1676408 1676617 + 3 NA Intergenic LTR16A|LTR|ERVL -338835 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 623-90 chr4 18227026 18227421 + 3 NA Intergenic Intergenic -205348 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 500-303 chr8 119158296 119158597 + 3 NA Intergenic Intergenic -49917 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 551-131 chr4 40466863 40467157 + 3 NA intron (NM_001098634, intron 2 of 6) intron (NM_001098634, intron 2 of 6) 35109 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 258-273 chr3 176505559 176505678 + 3 NA Intergenic MIR|SINE|MIR -9485 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 485-88 chr15 56872791 56873026 + 3 NA Intergenic L2a|LINE|L2 -45182 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 529-78 chr16 76579244 76579501 + 3 NA Intergenic MER57C2|LTR|ERV1 -55626 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 419-221 chr5 9290759 9290989 + 3 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -220459 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 537-257 chr8 114754327 114754516 + 3 NA Intergenic Intergenic 913592 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 448-126 chr2 147340247 147340414 + 3 NA Intergenic MamGypsy2-I|LTR|Gypsy -504187 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 525-233 chr6 169676351 169676610 + 3 NA intron (NM_182552, intron 2 of 25) MER4D1|LTR|ERV1 25549 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 717-27 chr14 50454993 50455599 + 3 NA intron (NM_198794, intron 14 of 31) L1M5|LINE|L1 -57998 NM_001367064 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 440-246 chr8 77181544 77181771 + 3 NA Intergenic Intergenic -180613 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 426-88 chr15 81447406 81447559 + 3 NA Intergenic L1P5|LINE|L1 -73269 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 517-122 chr2 32888884 32889194 + 3 NA intron (NR_027099, intron 7 of 10) L1MEc|LINE|L1 -38088 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 435-30 chr10 39036227 39036503 + 3 NA Intergenic ALR/Alpha|Satellite|centr 339769 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 442-306 chr8 143854897 143855081 + 3 NA Intergenic L1MEf|LINE|L1 -14016 NM_178564 340371 Hs.521926 NM_178564 ENSG00000185189 NRBP2 TRG16|pp9320 nuclear receptor binding protein 2 protein-coding 408-322 chr7 112605431 112605676 + 3 NA Intergenic Intergenic -12512 NR_110159 100996249 Hs.561749 NR_110159 LOC100996249 - uncharacterized LOC100996249 ncRNA 427-88 chr16 54251048 54251279 + 3 NA intron (NR_126340, intron 1 of 2) L1MB5|LINE|L1 19716 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 684-22 chr11 48275350 48275771 + 3 NA Intergenic L1MA3|LINE|L1 11699 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 680-19 chr10 54618222 54618567 + 3 NA intron (NR_134503, intron 3 of 5) intron (NR_134503, intron 3 of 5) -10437 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 488-131 chr2 41452045 41452310 + 3 NA Intergenic Intergenic -425378 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 795-50 chr7 16339305 16339705 + 3 NA intron (NM_001101417, intron 2 of 8) L1MC1|LINE|L1 82033 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 1099-17 chr22 27968829 27969267 + 3 NA intron (NR_026963, intron 2 of 4) AluSc|SINE|Alu -48436 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 770-65 chr6 138667232 138667622 + 3 NA Intergenic Intergenic -24241 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 589-94 chr3 118051430 118051677 + 3 NA Intergenic L1MEf|LINE|L1 -360628 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 921-16 chr4 81735673 81736294 + 3 NA Intergenic Intergenic -264076 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 363-223 chr2 125904103 125904353 + 3 NA Intergenic Intergenic 213757 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 463-26 chr1 191281569 191281797 + 3 NA Intergenic L1MEc|LINE|L1 -53185 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 1140-5 chr12 102673226 102673859 + 3 NA Intergenic Intergenic 150857 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 407-336 chr8 137382135 137382332 + 3 NA Intergenic Intergenic 31355 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 423-226 chr5 77083840 77083990 + 3 NA non-coding (NR_138050, exon 2 of 2) non-coding (NR_138050, exon 2 of 2) -2883 NR_024398 728723 Hs.161338 NR_024398 ENSG00000250802 ZBED3-AS1 - ZBED3 antisense RNA 1 ncRNA 913-39 chr7 144746037 144746558 + 3 NA intron (NM_001042482, intron 3 of 7) intron (NM_001042482, intron 3 of 7) -7399 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 390-296 chr5 64391637 64391800 + 3 NA Intergenic L1MD2|LINE|L1 -114297 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 526-160 chr22 34023777 34024037 + 3 NA Intergenic Intergenic -101019 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 396-148 chr2 4350496 4350676 + 3 NA Intergenic Intergenic 305636 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 375-466 chrX 87286285 87286435 + 3 NA Intergenic Intergenic -231442 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 650-65 chr20 14827015 14827442 + 3 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 102290 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 382-255 chr22 46786871 46787069 + 3 NA intron (NM_001284305, intron 1 of 12) AluJo|SINE|Alu 13043 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 565-69 chr19 56377269 56377562 + 3 NA non-coding (NR_003127, exon 7 of 7) non-coding (NR_003127, exon 7 of 7) -9032 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 412-351 chrX 12292966 12293110 + 3 NA intron (NM_001368396, intron 1 of 16) intron (NM_001368396, intron 1 of 16) 154565 NM_001368396 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 468-13 chr1 166773517 166773699 + 3 NA Intergenic L1PB4|LINE|L1 -65867 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 835-46 chr5 85624792 85625366 + 3 NA Intergenic Intergenic -657365 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 465-246 chr5 174104949 174105161 + 3 NA intron (NM_015980, intron 4 of 4) MIRb|SINE|MIR 59349 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 658-55 chr17 55753940 55754240 + 3 NA intron (NM_001102402, intron 1 of 5) MER21A|LTR|ERVL 2985 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 430-29 chr10 52287752 52287944 + 3 NA intron (NM_001098512, intron 14 of 17) intron (NM_001098512, intron 14 of 17) 26280 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 481-285 chr7 91333725 91333937 + 3 NA Intergenic Intergenic 69398 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 566-92 chr2 105966399 105966598 + 3 NA Intergenic Intergenic -99190 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 467-58 chr11 125318472 125318684 + 3 NA intron (NM_022062, intron 2 of 12) Tigger1|DNA|TcMar-Tigger 153827 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 270-178 chr2 52417473 52417583 + 3 NA Intergenic Intergenic 46880 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 1162-7 chr21 15702755 15703497 + 3 NA Intergenic L1MCb|LINE|L1 -26808 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 362-90 chr11 68918987 68919151 + 3 NA intron (NM_002180, intron 7 of 14) L1MEc|LINE|L1 15218 NM_002180 3508 Hs.503048 NM_002180 ENSG00000132740 IGHMBP2 CATF1|CMT2S|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7 immunoglobulin mu DNA binding protein 2 protein-coding 430-324 chr8 138056360 138056517 + 3 NA intron (NR_161374, intron 1 of 7) L2a|LINE|L2 27107 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 620-69 chr2 152883336 152883639 + 3 NA Intergenic Arthur1B|DNA|hAT-Tip100 164850 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 394-275 chr5 106823904 106824106 + 3 NA intron (NR_104671, intron 2 of 3) L1ME3G|LINE|L1 187009 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 956-13 chr18 62689783 62690403 + 3 NA Intergenic Intergenic -25448 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 436-316 chr8 129046313 129046514 + 3 NA Intergenic L1ME2|LINE|L1 -80412 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 361-171 chr17 60265192 60265342 + 3 NA intron (NM_032582, intron 9 of 33) L3|LINE|CR1 -33622 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 933-17 chr19 43846897 43847388 + 3 NA exon (NM_181845, exon 7 of 7) exon (NM_181845, exon 7 of 7) 19821 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 731-19 chr12 2565846 2566190 + 3 NA intron (NM_199460, intron 11 of 49).2 MIRb|SINE|MIR 106202 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 523-99 chr16 73201848 73202036 + 3 NA Intergenic Intergenic -57495 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 335-517 chr7 131256419 131256651 + 3 NA intron (NM_001145354, intron 2 of 18) L1M4b|LINE|L1 71244 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 549-163 chr5 34546298 34546665 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -109847 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 370-66 chr10 107557896 107558054 + 3 NA Intergenic Intergenic -393269 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 505-59 chr12 41901813 41902087 + 3 NA Intergenic Intergenic 137761 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 573-80 chr18 56229147 56229441 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -38032 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 476-207 chr5 5150637 5150867 + 3 NA intron (NM_139056, intron 3 of 22) MER70A|LTR|ERVL 10422 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 717-23 chr12 14920104 14920484 + 3 NA intron (NM_152321, intron 4 of 6) intron (NM_152321, intron 4 of 6) 8831 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 406-69 chr13 107396685 107396861 + 3 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -75810 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 543-37 chr10 63007761 63008047 + 3 NA Intergenic MamRep4096|DNA|hAT-Tip100 -125343 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 537-69 chr14 72191576 72191823 + 3 NA intron (NM_001370288, intron 2 of 16) THE1B|LTR|ERVL-MaLR 258172 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 770-14 chr12 128124542 128124978 + 3 NA Intergenic Intergenic 6543 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 521-96 chr15 98358676 98359003 + 3 NA intron (NR_146567, intron 1 of 2) MER50|LTR|ERV1 -27281 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 568-10 chr10 24779795 24780128 + 3 NA Intergenic L3|LINE|CR1 -56074 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 514-271 chr7 53322878 53323145 + 3 NA Intergenic L1M5|LINE|L1 287378 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 438-240 chr6 72496057 72496289 + 3 NA Intergenic Intergenic -125670 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 624-124 chr8 134982569 134982861 + 3 NA Intergenic L1M4a2|LINE|L1 132780 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 452-263 chr8 49174253 49174462 + 3 NA Intergenic Intergenic 102013 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 577-75 chr17 53923138 53923510 + 3 NA Intergenic Intergenic 100397 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 888-18 chr18 10428711 10429307 + 3 NA Intergenic Intergenic -14639 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 497-134 chr2 123433118 123433363 + 3 NA Intergenic Intergenic -359759 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 673-129 chrX 41773224 41773645 + 3 NA intron (NM_003688, intron 3 of 26) L1ME3B|LINE|L1 49253 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 381-202 chr2 121802097 121802277 + 3 NA Intergenic L1MDa|LINE|L1 46536 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 286-74 chr11 84270167 84270327 + 3 NA intron (NM_001142699, intron 7 of 27) L2c|LINE|L2 3033 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 505-38 chr10 106338649 106338959 + 3 NA Intergenic Intergenic 198639 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 726-40 chr2 4204797 4205186 + 3 NA Intergenic LTR50|LTR|ERVL 230830 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 352-244 chr2 88507200 88507350 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -17374 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 1081-12 chr6 144961683 144962513 + 3 NA Intergenic MIRb|SINE|MIR 556443 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 258-11 chr1 100772539 100772675 + 3 NA Intergenic L1MEf|LINE|L1 52865 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 696-73 chr3 98307097 98307484 + 3 NA Intergenic Intergenic 24402 NM_001005482 79310 Hs.554711 NM_001005482 ENSG00000197938 OR5H2 OR3-10 olfactory receptor family 5 subfamily H member 2 protein-coding 606-87 chr2 114478182 114478408 + 3 NA intron (NM_001321908, intron 2 of 25) L1PA4|LINE|L1 16718 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1145-2 chr11 54971440 54972247 + 3 NA Intergenic ALR/Alpha|Satellite|centr 265011 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 923-23 chr6 40435729 40436270 + 3 NA intron (NM_020737, intron 1 of 2) MER33|DNA|hAT-Charlie 57662 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 386-245 chr3 135328217 135328435 + 3 NA Intergenic L3|LINE|CR1 533066 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 930-18 chr20 10167597 10168049 + 3 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -50975 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 492-26 chr10 83671654 83671936 + 3 NA TTS (NR_134317) TTS (NR_134317) 5294 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 417-149 chr2 122526949 122527110 + 3 NA Intergenic L2c|LINE|L2 546452 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 577-87 chr19 57986101 57986426 + 3 NA intron (NM_001348025, intron 6 of 6) AluJb|SINE|Alu -11729 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 836-17 chr12 50916203 50916749 + 3 NA Intergenic MER61-int|LTR|ERV1 -8539 NM_014033 25840 Hs.711113 NM_014033 ENSG00000185432 METTL7A AAM-B|AAMB methyltransferase like 7A protein-coding 190-83 chr2 22544499 22544590 + 3 NA Intergenic L2a|LINE|L2 8065 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 349-310 chr21 45061019 45061196 + 3 NA Intergenic Tigger7|DNA|TcMar-Tigger 12104 NR_027292 728039 Hs.309203 NM_032653 ENSG00000235374 SSR4P1 C21orf122|PRED57|PRED90 signal sequence receptor subunit 4 pseudogene 1 pseudo 878-46 chr7 129012649 129013025 + 3 NA intron (NM_001191028, intron 4 of 21) MER58A|DNA|hAT-Charlie 42336 NR_034053 23534 Hs.193613 NM_012470 ENSG00000064419 TNPO3 IPO12|LGMD1F|LGMDD2|MTR10A|TRN-SR|TRN-SR2|TRNSR transportin 3 protein-coding 457-63 chr14 42948215 42948419 + 3 NA Intergenic L1P4a|LINE|L1 1341461 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 305-453 chr5 142796983 142797114 + 3 NA intron (NM_001349547, intron 1 of 21) intron (NM_001349547, intron 1 of 21) 25821 NM_001349547 23092 Hs.654668 NM_015071 ENSG00000145819 ARHGAP26 GRAF|GRAF1|OPHN1L|OPHN1L1 Rho GTPase activating protein 26 protein-coding 512-233 chr6 10364691 10364958 + 3 NA Intergenic Intergenic -39678 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 434-228 chr5 90189446 90189746 + 3 NA intron (NR_120601, intron 4 of 5) intron (NR_120601, intron 4 of 5) 100475 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 509-246 chr8 36103778 36104126 + 3 NA Intergenic L1MA2|LINE|L1 -393632 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 440-135 chr2 208259081 208259286 + 3 NA Intergenic Intergenic 3950 NR_046452 100507475 Hs.668038 NR_046452 ENSG00000231908 IDH1-AS1 - IDH1 antisense RNA 1 ncRNA 739-31 chr19 53295162 53295637 + 3 NA Intergenic LTR10E|LTR|ERV1 -3965 NR_159880 112401 Hs.348263 NM_033341 ENSG00000163098 BIRC8 ILP-2|ILP2|RNF136|hILP2 baculoviral IAP repeat containing 8 pseudo 558-63 chr15 75980222 75980626 + 3 NA intron (NM_138573, intron 3 of 5) Tigger4b|DNA|TcMar-Tigger 32000 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 785-55 chr7 52819390 52819750 + 3 NA Intergenic L1MA9|LINE|L1 -216063 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 545-40 chr11 80973498 80973774 + 3 NA Intergenic MIR|SINE|MIR -210833 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 782-47 chr4 60602059 60602559 + 3 NA Intergenic L1PA11|LINE|L1 -320310 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 335-42 chr10 6358740 6358934 + 3 NA Intergenic L1M1|LINE|L1 8521 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 527-31 chr10 60051831 60052191 + 3 NA intron (NM_001204403, intron 42 of 43) intron (NM_001204403, intron 42 of 43) 89005 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 486-154 chr2 138469410 138469579 + 3 NA Intergenic Intergenic -32276 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 466-205 chr5 60462541 60462729 + 3 NA intron (NM_001364599, intron 1 of 16) MER94|DNA|hAT-Blackjack -25078 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 793-51 chr8 102254216 102254607 + 3 NA exon (NM_015902, exon 59 of 59) exon (NM_015902, exon 59 of 59) 14960 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 481-3 chr1 48371504 48371775 + 3 NA intron (NM_019073, intron 9 of 12) intron (NM_019073, intron 9 of 12) 100565 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 602-47 chr18 63631600 63631845 + 3 NA Intergenic L1MA8|LINE|L1 12534 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 364-190 chr19 37474860 37475085 + 3 NA intron (NM_144694, intron 2 of 4) AluSx|SINE|Alu 5401 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 495-192 chr5 21837787 21837964 + 3 NA intron (NM_004061, intron 8 of 14) intron (NM_004061, intron 8 of 14) -46579 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 777-71 chr8 129961503 129961918 + 3 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) -21899 NM_001256763 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 550-106 chr2 21534065 21534283 + 3 NA Intergenic L1ME1|LINE|L1 176478 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 308-242 chr2 119728283 119728416 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -31573 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 946-12 chr2 56676733 56677293 + 3 NA Intergenic Intergenic -491243 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 315-410 chr6 23675712 23675862 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -450428 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 937-12 chr17 58950242 58950720 + 3 NA intron (NM_014906, intron 1 of 6) L1M2c|LINE|L1 156399 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 731-81 chrX 94855890 94856241 + 3 NA Intergenic L1PB1|LINE|L1 207161 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 371-72 chr11 81750539 81750741 + 3 NA Intergenic Intergenic 140196 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 513-144 chr2 133030823 133031103 + 3 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 115406 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 235-88 chr12 90375581 90375683 + 3 NA Intergenic Intergenic 82314 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 1680-4 chr2 237943395 237944408 + 3 NA Intergenic MER52A|LTR|ERV1 -23044 NR_037904 100533179 Hs.471785 NR_037904 ENSG00000258984 UBE2F-SCLY - UBE2F-SCLY readthrough (NMD candidate) ncRNA 702-4 chr1 75185971 75186326 + 3 NA Intergenic L1PREC2|LINE|L1 51760 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 516-8 chr1 158463692 158463995 + 3 NA Intergenic Intergenic -1719 NM_001004473 391109 Hs.690410 NM_001004473 ENSG00000173285 OR10K1 OR1-6 olfactory receptor family 10 subfamily K member 1 protein-coding 500-319 chr9 74404480 74404829 + 3 NA Intergenic L1MB4|LINE|L1 33123 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 913-20 chr2 185308271 185308892 + 3 NA Intergenic LTR80B|LTR|ERVL -141509 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 282-442 chr8 77269012 77269174 + 3 NA Intergenic Intergenic -181604 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 561-111 chr20 46615900 46616320 + 3 NA intron (NM_001193340, intron 2 of 12) intron (NM_001193340, intron 2 of 12) 35349 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 298-502 chr9 85411103 85411302 + 3 NA Intergenic L1ME1|LINE|L1 330827 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 414-347 chr9 25596767 25596991 + 3 NA Intergenic L1MA10|LINE|L1 81979 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 724-49 chr3 20918602 20919007 + 3 NA Intergenic L1PB1|LINE|L1 -486922 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 744-68 chr7 75709310 75709714 + 3 NA intron (NM_005338, intron 1 of 30) L1M3|LINE|L1 29429 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 693-9 chr1 211227905 211228168 + 3 NA Intergenic HERV9NC-int|LTR|ERV1 -31241 NR_146432 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 598-21 chr10 47071198 47071572 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 159663 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 489-17 chr1 213091506 213091834 + 3 NA intron (NM_001349671, intron 4 of 12) Charlie1a|DNA|hAT-Charlie 40429 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 1135-6 chr3 190772642 190773269 + 3 NA Intergenic L1MB1|LINE|L1 89739 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 667-108 chr8 27889628 27889973 + 3 NA intron (NM_173833, intron 7 of 8) intron (NM_173833, intron 7 of 8) -3684 NR_036249 100422828 NR_036249 ENSG00000265847 MIR4287 - microRNA 4287 ncRNA 497-267 chr7 91408213 91408497 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 143922 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 519-172 chr5 35425637 35425846 + 3 NA Intergenic Intergenic -192122 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 492-292 chrX 99502136 99502349 + 3 NA Intergenic Intergenic 908031 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 178-27 chr11 8118937 8119058 + 3 NA intron (NM_001135109, intron 1 of 1) L1MEj|LINE|L1 37635 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 303-52 chr10 83626419 83626608 + 3 NA Intergenic Intergenic 50576 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 728-106 chr8 145067732 145068057 + 3 NA Intergenic LTR65|LTR|ERV1 15427 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 448-91 chr16 13846909 13847102 + 3 NA Intergenic Intergenic -73152 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 300-170 chr19 9756387 9756523 + 3 NA intron (NR_148544, intron 5 of 7) intron (NR_148544, intron 5 of 7) 12283 NM_001353799 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 978-9 chr17 54582107 54582503 + 3 NA Intergenic L1PREC2|LINE|L1 -318386 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 422-273 chr7 20291496 20291672 + 3 NA Intergenic HAL1ME|LINE|L1 -5124 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 838-28 chr5 135202812 135203343 + 3 NA intron (NR_161235, intron 3 of 5) L1MC4a|LINE|L1 45100 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 381-265 chr4 36166332 36166483 + 3 NA intron (NR_146894, intron 10 of 32) intron (NR_146894, intron 10 of 32) 77532 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 579-82 chr20 7208227 7208556 + 3 NA intron (NR_110609, intron 3 of 7) MSTD|LTR|ERVL-MaLR 45811 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 408-129 chr16 35267535 35267832 + 3 NA Intergenic LTR6A|LTR|ERV1 71924 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 459-221 chr4 115495092 115495345 + 3 NA Intergenic L1ME1|LINE|L1 -381598 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 735-18 chr12 128419270 128419614 + 3 NA intron (NM_001136103, intron 2 of 8) MER113|DNA|hAT-Charlie 125350 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 438-127 chr2 95262183 95262381 + 3 NA Intergenic Intergenic -12167 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 347-144 chr15 26256511 26256770 + 3 NA Intergenic L1MC3|LINE|L1 140827 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 565-103 chr20 47069940 47070163 + 3 NA intron (NM_172110, intron 5 of 13) L1M4|LINE|L1 -96916 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 337-594 chr9 135435963 135436163 + 3 NA Intergenic L1MB3|LINE|L1 36186 NR_038969 100506599 Hs.561897 NR_038969 ENSG00000225361 PPP1R26-AS1 - PPP1R26 antisense RNA 1 ncRNA 565-36 chr12 128633646 128634020 + 3 NA intron (NM_001136103, intron 4 of 8) intron (NM_001136103, intron 4 of 8) 190125 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 677-16 chr10 75254553 75254949 + 3 NA Intergenic Intergenic -18794 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 660-91 chr6 46492731 46493062 + 3 NA promoter-TSS (NM_001251973) promoter-TSS (NM_001251973) -829 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 580-8 chr1 169314104 169314345 + 3 NA intron (NR_104229, intron 3 of 12) L1MEd|LINE|L1 53573 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 714-19 chr14 59740592 59740973 + 3 NA intron (NM_021136, intron 2 of 8) intron (NM_021136, intron 2 of 8) -93762 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 686-46 chr2 118581924 118582272 + 3 NA Intergenic Intergenic 20868 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 524-199 chr5 56221065 56221454 + 3 NA intron (NM_024669, intron 2 of 11) intron (NM_024669, intron 2 of 11) 12071 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 542-157 chr4 148938087 148938355 + 3 NA Intergenic L1MC4|LINE|L1 4157 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 309-81 chr11 48194926 48195061 + 3 NA Intergenic L1M4b|LINE|L1 -21817 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 338-104 chr11 81532877 81533105 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 357845 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 762-75 chr8 122099192 122099592 + 3 NA Intergenic Intergenic -457952 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 461-86 chr15 92517491 92517792 + 3 NA Intergenic (ATAGATAC)n|Simple_repeat|Simple_repeat 45964 NR_161371 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 453-39 chr11 42416774 42416982 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -163188 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 506-22 chr1 194469888 194470170 + 3 NA Intergenic Intergenic 1165284 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 346-334 chr3 182775384 182775629 + 3 NA Intergenic L1M2|LINE|L1 -17998 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 570-3 chr1 60311198 60311453 + 3 NA Intergenic L1MB3|LINE|L1 -237555 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 359-321 chr3 76029148 76029358 + 3 NA Intergenic Intergenic -243704 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 454-59 chr11 114540306 114540464 + 3 NA intron (NM_152315, intron 2 of 5) L1ME3Cz|LINE|L1 19496 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 331-220 chr18 34074422 34074605 + 3 NA intron (NM_001353233, intron 5 of 11) intron (NM_001353233, intron 5 of 11) -25901 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 900-45 chr9 23968474 23969041 + 3 NA Intergenic L1ME3F|LINE|L1 -118156 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 479-134 chr3 54021282 54021559 + 3 NA Intergenic L2b|LINE|L2 -101132 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 342-510 chr8 55747728 55747904 + 3 NA intron (NM_001286661, intron 3 of 4) intron (NM_001286661, intron 3 of 4) 25562 NM_001363177 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 501-162 chr3 44719541 44719829 + 3 NA intron (NM_001282880, intron 3 of 4) intron (NM_001282880, intron 3 of 4) 7025 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 447-219 chr5 119876667 119876895 + 3 NA Intergenic MIRb|SINE|MIR 247222 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 564-125 chr3 50933916 50934264 + 3 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) 259010 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 233-91 chr14 53401094 53401260 + 3 NA Intergenic Intergenic 247823 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 599-123 chr7 16112386 16112652 + 3 NA intron (NM_001101426, intron 9 of 9) L1M6|LINE|L1 -97967 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 631-20 chr10 75405455 75405792 + 3 NA intron (NR_110302, intron 1 of 1) CpG-3054 1458 NR_110302 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 483-73 chr15 25140273 25140538 + 3 NA intron (NR_146177, intron 61 of 147) MER110-int|LTR|ERV1 4763 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 496-275 chr8 19432639 19432867 + 3 NA intron (NM_001130518, intron 6 of 9) L1MB5|LINE|L1 118777 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 920-8 chr14 49276142 49276524 + 3 NA Intergenic LFSINE_Vert|SINE|tRNA 310047 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 506-109 chr17 33811846 33812172 + 3 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 -278249 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 799-21 chr17 34056675 34057279 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 99829 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 424-13 chr1 181826316 181826603 + 3 NA Intergenic L1M4c|LINE|L1 235253 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 841-29 chr5 2882649 2883203 + 3 NA Intergenic L1ME3|LINE|L1 -34928 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 718-3 chr1 68503968 68504372 + 3 NA intron (NR_110671, intron 1 of 2) L1PB1|LINE|L1 -7088 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 687-40 chr15 97452350 97452720 + 3 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 69276 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 564-105 chr2 146095706 146096007 + 3 NA Intergenic Intergenic -491201 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 615-90 chr4 15876341 15876715 + 3 NA Intergenic Intergenic 62212 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 498-48 chr11 27018731 27018981 + 3 NA Intergenic MIRb|SINE|MIR -21959 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 503-167 chr20 19529083 19529418 + 3 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -244654 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 815-6 chr10 7151984 7152435 + 3 NA Intergenic Intergenic 34575 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 752-81 chr9 72320608 72320961 + 3 NA intron (NR_110952, intron 2 of 4) intron (NR_110952, intron 2 of 4) 15348 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 475-168 chr22 33353162 33353416 + 3 NA intron (NM_133642, intron 9 of 14) Charlie7|DNA|hAT-Charlie 83380 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 508-97 chr2 39914561 39914789 + 3 NA Intergenic Intergenic -2959 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 376-281 chr4 60523307 60523458 + 3 NA Intergenic Intergenic -399237 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 461-41 chr10 98600680 98600912 + 3 NA intron (NM_021828, intron 9 of 11) (AT)n|Simple_repeat|Simple_repeat -153833 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 530-150 chr20 40175105 40175344 + 3 NA Intergenic Intergenic 170763 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 616-143 chr6 99050962 99051269 + 3 NA Intergenic MLT2B1|LTR|ERVL -73494 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 629-139 chr9 35763980 35764289 + 3 NA Intergenic AluJb|SINE|Alu -9858 NM_001044264 692094 Hs.571601 NM_001044264 ENSG00000215183 MSMP PSMP microseminoprotein, prostate associated protein-coding 562-58 chr14 61980145 61980412 + 3 NA intron (NM_001367657, intron 3 of 6) MADE2|DNA|TcMar-Mariner 52583 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 333-17 chr1 74874492 74874670 + 3 NA Intergenic Intergenic -141173 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 473-47 chr11 100251048 100251336 + 3 NA intron (NM_001243270, intron 15 of 23) MLT1G|LTR|ERVL-MaLR -436096 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 905-8 chr12 103593755 103594253 + 3 NA intron (NM_017564, intron 2 of 68) L4_A_Mam|LINE|RTE-X 6731 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 503-166 chr20 119125 119468 + 3 NA Intergenic L1MEg|LINE|L1 -23294 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 599-53 chr19 29171230 29171525 + 3 NA Intergenic L1MEb|LINE|L1 41774 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 461-176 chr3 114276175 114276346 + 3 NA Intergenic L1MC5a|LINE|L1 -17768 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 330-101 chr11 87335780 87335901 + 3 NA Intergenic L1MD|LINE|L1 297906 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 769-35 chr2 226040760 226041347 + 3 NA Intergenic Intergenic -101741 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 481-301 chr8 131178667 131179025 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -137937 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 473-282 chr8 121974975 121975285 + 3 NA Intergenic Intergenic -333690 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 505-100 chr15 56748324 56748695 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -14423 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 478-222 chr4 141420749 141421151 + 3 NA Intergenic L1MA1|LINE|L1 -88333 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 462-229 chr5 96300448 96300619 + 3 NA intron (NR_130776, intron 1 of 4) L1M1|LINE|L1 131626 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 550-71 chr14 45605680 45605899 + 3 NA Intergenic L1PA3|LINE|L1 109813 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 204-24 chr10 33544462 33544549 + 3 NA Intergenic L1MCa|LINE|L1 -209600 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 483-196 chr5 12826411 12826589 + 3 NA Intergenic L1PB4|LINE|L1 158641 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 320-58 chr10 44415029 44415240 + 3 NA Intergenic Intergenic -30037 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 361 chr1 18434435 18434643 + 3 NA Intergenic Intergenic -46391 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 549-158 chr5 4279027 4279273 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -494331 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 478-96 chr15 60824914 60825200 + 3 NA intron (NM_134261, intron 1 of 10) MamSINE1|SINE|tRNA-RTE 143488 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 751-66 chr5 169432187 169432653 + 3 NA Intergenic MER63D|DNA|hAT-Blackjack -131281 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 475-52 chr12 11980886 11981136 + 3 NA Intergenic Intergenic -68850 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 368-371 chr5 116223618 116223862 + 3 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) -32003 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 315-169 chr16 49142114 49142254 + 3 NA Intergenic Intergenic 139654 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 431-45 chr10 76011999 76012276 + 3 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 229376 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 422-80 chr14 62495835 62496080 + 3 NA Intergenic L1M4c|LINE|L1 -355984 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1000-8 chr18 5270023 5270641 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 25394 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 604-70 chr18 29429564 29429828 + 3 NA Intergenic Intergenic -869214 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 444-114 chr2 5421136 5421402 + 3 NA Intergenic Intergenic 269849 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 692-102 chr8 121465209 121465521 + 3 NA Intergenic L1PA16|LINE|L1 -173981 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 385-56 chr11 90230037 90230279 + 3 NA Intergenic L1M4|LINE|L1 -6794 NM_001144073 26973 Hs.22857 NM_012124 ENSG00000110172 CHORDC1 CHP1 cysteine and histidine rich domain containing 1 protein-coding 307-300 chr3 44138606 44138727 + 3 NA Intergenic L1MC5|LINE|L1 24454 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 661-44 chr19 56051025 56051375 + 3 NA intron (NM_153447, intron 12 of 14) AluSx|SINE|Alu -15484 NR_110741 101928886 Hs.434652 NR_110741 ENSG00000267522 LINC01864 - long intergenic non-protein coding RNA 1864 ncRNA 342-277 chr20 6718836 6719083 + 3 NA Intergenic L2c|LINE|L2 17177 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 398-215 chr3 110605195 110605377 + 3 NA Intergenic L1M4c|LINE|L1 464673 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 432-34 chr10 77570957 77571174 + 3 NA intron (NM_001271519, intron 1 of 28) L1MEd|LINE|L1 66743 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 547-2 chr1 34523734 34524017 + 3 NA Intergenic L2c|LINE|L2 145819 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 522-30 chr10 113973446 113973676 + 3 NA Intergenic Intergenic -70305 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 1219-6 chr20 42072334 42073032 + 3 NA TTS (NM_007050) TTS (NM_007050) -454306 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 443-135 chr19 7762830 7763116 + 3 NA promoter-TSS (NR_026707) promoter-TSS (NR_026707) -270 NM_001144906 10332 Hs.421437 NM_014257 ENSG00000104938 CLEC4M CD209L|CD299|DC-SIGN2|DC-SIGNR|DCSIGNR|HP10347|L-SIGN|LSIGN C-type lectin domain family 4 member M protein-coding 625-69 chr3 26842586 26842835 + 3 NA Intergenic Intergenic 148153 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 650-102 chr6 40335821 40336172 + 3 NA Intergenic Intergenic 20010 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 554-56 chr12 15815927 15816293 + 3 NA Intergenic Intergenic -26722 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 435-73 chr13 111869029 111869240 + 3 NA Intergenic L1MEd|LINE|L1 -24244 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 285-211 chr2 144385328 144385453 + 3 NA 3' UTR (NM_014795, exon 10 of 10) 3' UTR (NM_014795, exon 10 of 10) -52321 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 383-215 chr2 232931926 232932135 + 3 NA intron (NM_019850, intron 3 of 14) MLT1A0-int|LTR|ERVL-MaLR -3879 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 699-105 chr8 141695837 141696233 + 3 NA Intergenic L2b|LINE|L2 90278 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 514-164 chr20 2618642 2618833 + 3 NA intron (NM_080751, intron 16 of 19) intron (NM_080751, intron 16 of 19) -33895 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 502-97 chr15 57569912 57570152 + 3 NA Intergenic HAL1|LINE|L1 -21872 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 482-66 chr12 46179983 46180246 + 3 NA Intergenic LTR37-int|LTR|ERV1 86402 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 550-188 chr5 150918193 150918504 + 3 NA Intergenic Intergenic -13365 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 423-19 chr1 244100339 244100653 + 3 NA Intergenic Intergenic 47291 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 415-159 chr20 45735528 45735786 + 3 NA Intergenic L1MA7|LINE|L1 13310 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 865-50 chr9 111542145 111542670 + 3 NA exon (NM_133464, exon 6 of 6) exon (NM_133464, exon 6 of 6) 17228 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 490-116 chr18 13928554 13928738 + 3 NA Intergenic Intergenic -12939 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 263-440 chr8 140137848 140137985 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -37381 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 589-170 chr9 124371682 124371944 + 3 NA intron (NM_002799, intron 6 of 7) intron (NM_002799, intron 6 of 7) 18340 NR_027406 100129034 Hs.654980 NR_027406 LOC100129034 - uncharacterized LOC100129034 ncRNA 671-99 chr8 88354103 88354579 + 3 NA Intergenic AluJb|SINE|Alu -26858 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 839-44 chr6 120971230 120971616 + 3 NA Intergenic L2c|LINE|L2 363057 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 427-255 chr8 80947845 80948107 + 3 NA Intergenic Intergenic -73195 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 467-32 chr10 69556636 69556971 + 3 NA Intergenic Intergenic 16619 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 209-212 chr3 173558174 173558248 + 3 NA intron (NM_014932, intron 2 of 6) L1ME2|LINE|L1 -26223 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 578-180 chr8 117593648 117593965 + 3 NA Intergenic Intergenic 73093 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 404-312 chr8 77432963 77433219 + 3 NA Intergenic L1MA8|LINE|L1 -17606 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 505-205 chr3 178988508 178988841 + 3 NA Intergenic LTR22B1|LTR|ERVK 83135 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 517-114 chr19 33681437 33681732 + 3 NA intron (NM_001127895, intron 2 of 4) intron (NM_001127895, intron 2 of 4) -2944 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 637-70 chr2 229052928 229053192 + 3 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 179032 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 448-262 chr7 64110899 64111264 + 3 NA Intergenic Intergenic 65647 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 360-370 chr5 85884612 85884803 + 3 NA Intergenic Intergenic -397737 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 463-192 chr3 122037990 122038269 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -15882 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 685-88 chr7 29575694 29576057 + 3 NA Intergenic Intergenic 10342 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 473-183 chr3 149399385 149399668 + 3 NA Intergenic Intergenic 21748 NR_046650 100874091 Hs.549633 NR_046650 ENSG00000240541 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 543-167 chr3 51160078 51160354 + 3 NA intron (NM_004947, intron 11 of 52) intron (NM_004947, intron 11 of 52) -225075 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 448-287 chr8 108798257 108798454 + 3 NA Intergenic MER46C|DNA|TcMar-Tigger -10761 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 291-214 chr2 65489198 65489344 + 3 NA Intergenic Intergenic -56672 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 532-26 chr10 113625738 113625963 + 3 NA intron (NM_001322945, intron 21 of 40) intron (NM_001322945, intron 21 of 40) 38191 NM_001322945 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 760-21 chr15 70694730 70695354 + 3 NA exon (NM_001008224, exon 3 of 19) exon (NM_001008224, exon 3 of 19) 7240 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 378-314 chr4 92528962 92529185 + 3 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 224674 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 535-79 chr14 81620222 81620444 + 3 NA intron (NR_110074, intron 1 of 2) intron (NR_110074, intron 1 of 2) 2728 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 453-259 chr7 71266231 71266497 + 3 NA intron (NM_022479, intron 1 of 10) MSTA|LTR|ERVL-MaLR -41310 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 1144-3 chr10 78879400 78879956 + 3 NA Intergenic L1MD2|LINE|L1 187770 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 503-105 chr15 71213738 71214050 + 3 NA intron (NM_024817, intron 2 of 16) MIRb|SINE|MIR -24835 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 431-291 chr8 64325308 64325581 + 3 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 43114 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 441-155 chr3 35438714 35438916 + 3 NA Intergenic MER4D|LTR|ERV1 -44792 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 421-64 chr13 59004494 59004688 + 3 NA Intergenic Helitron3Na_Mam|RC|Helitron -771474 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 429-250 chr6 13970676 13970859 + 3 NA intron (NM_001165032, intron 2 of 3) intron (NM_001165032, intron 2 of 3) 45574 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 914-26 chr6 147578020 147578602 + 3 NA Intergenic Intergenic 69621 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 395-236 chr3 159599625 159599832 + 3 NA intron (NM_001197108, intron 1 of 6) L1MA4A|LINE|L1 168884 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 325-457 chr5 110180061 110180203 + 3 NA Intergenic Intergenic 296950 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 549-2 chr1 41659933 41660265 + 3 NA intron (NM_001127714, intron 1 of 7) intron (NM_001127714, intron 1 of 7) -175416 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 499-131 chr2 163027803 163028097 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -189183 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 513-227 chr5 105769153 105769413 + 3 NA Intergenic Intergenic 669809 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 509-5 chr1 63955090 63955315 + 3 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 157003 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 492-253 chr8 46874490 46874663 + 3 NA Intergenic BSR/Beta|Satellite|Satellite 33690 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 352-351 chr4 31793258 31793387 + 3 NA Intergenic Intergenic -204057 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 494-86 chr16 71196930 71197164 + 3 NA intron (NM_001198543, intron 1 of 18) MER41A|LTR|ERV1 33675 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 516-27 chr10 115017733 115017928 + 3 NA Intergenic MIRc|SINE|MIR 23173 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 487-17 chr1 116143276 116143457 + 3 NA Intergenic L1ME3D|LINE|L1 31611 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 580-150 chr5 42489439 42489690 + 3 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) -58479 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 669-34 chr16 3223669 3224034 + 3 NA 3' UTR (NM_001145446, exon 5 of 5) 3' UTR (NM_001145446, exon 5 of 5) 8289 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 231-329 chr7 40760964 40761052 + 3 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 218931 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 577-2 chr1 33047333 33047621 + 3 NA Intergenic Intergenic -10566 NM_001319143 204 Hs.470907 NM_001625 ENSG00000004455 AK2 ADK2 adenylate kinase 2 protein-coding 643-54 chr2 79048418 79048757 + 3 NA Intergenic L1MA2|LINE|L1 22885 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 801-8 chr12 8976133 8976568 + 3 NA intron (NR_137427, intron 1 of 2) L1M4c|LINE|L1 -13196 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 482-145 chr20 39160022 39160213 + 3 NA Intergenic L2a|LINE|L2 64631 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 793-27 chr2 41752736 41753272 + 3 NA Intergenic L1MC5a|LINE|L1 -124551 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 416-189 chr2 189908791 189908993 + 3 NA Intergenic L1M1|LINE|L1 124442 NR_110332 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 405-276 chr6 49297010 49297243 + 3 NA Intergenic Intergenic 166127 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 423-212 chr5 10214887 10215127 + 3 NA Intergenic L3|LINE|CR1 34881 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 410-327 chr9 8473845 8474061 + 3 NA intron (NM_130392, intron 14 of 30) intron (NM_130392, intron 14 of 30) 259993 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 336-153 chr13 94893044 94893212 + 3 NA intron (NR_110754, intron 2 of 4) MLT1J|LTR|ERVL-MaLR -66913 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 586-18 chr1 243963606 243963868 + 3 NA intron (NR_033883, intron 1 of 11) L1MC5a|LINE|L1 46335 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 467-260 chr7 34646880 34647177 + 3 NA intron (NR_033664, intron 2 of 4) MIR|SINE|MIR -11190 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 488-147 chr2 152047351 152047570 + 3 NA intron (NM_000726, intron 2 of 13) LTR39|LTR|ERV1 51303 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 478-166 chr21 18291614 18291892 + 3 NA intron (NM_002772, intron 21 of 24) intron (NM_002772, intron 21 of 24) 45878 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 553-38 chr12 10639819 10640086 + 3 NA intron (NM_018423, intron 1 of 10) intron (NM_018423, intron 1 of 10) -26343 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 289-126 chr13 54657902 54658019 + 3 NA Intergenic Intergenic -345912 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 814-22 chr14 61909122 61909592 + 3 NA intron (NM_001367661, intron 2 of 8) MLT1C|LTR|ERVL-MaLR -18338 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 583-86 chr2 50821991 50822358 + 3 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -125912 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 543-120 chr2 40110769 40110983 + 3 NA 3' UTR (NM_001112802, exon 8 of 8) 3' UTR (NM_001112802, exon 8 of 8) 193242 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 1101-13 chr5 8803679 8804361 + 3 NA Intergenic L1PB1|LINE|L1 -35712 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 473-65 chr12 114537300 114537589 + 3 NA Intergenic Intergenic -129002 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 850-52 chr9 31958498 31958990 + 3 NA Intergenic L1MA9|LINE|L1 -425859 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 778-62 chr7 35653832 35654241 + 3 NA intron (NM_022373, intron 5 of 8) L1MA4A|LINE|L1 41099 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 740-40 chr2 67893210 67893578 + 3 NA Intergenic LTR81B|LTR|Gypsy -67832 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 406-78 chr14 56971998 56972227 + 3 NA Intergenic L1M5|LINE|L1 158954 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 480-154 chr2 115500081 115500358 + 3 NA intron (NM_001321912, intron 5 of 25) intron (NM_001321912, intron 5 of 25) 156404 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 358-394 chr5 170876980 170877164 + 3 NA intron (NM_022897, intron 1 of 27) intron (NM_022897, intron 1 of 27) 15054 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 627-90 chr5 55406882 55407205 + 3 NA intron (NM_015360, intron 22 of 26) intron (NM_015360, intron 22 of 26) 99054 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 510-48 chr11 74730447 74730672 + 3 NA intron (NM_015424, intron 1 of 11) intron (NM_015424, intron 1 of 11) 867 NM_001278473 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 543-224 chr7 30376124 30376378 + 3 NA Intergenic Intergenic 6201 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 974-8 chr2 224727291 224727854 + 3 NA Intergenic L1MA4|LINE|L1 -142175 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 512-276 chr8 123136906 123137246 + 3 NA intron (NM_001363149, intron 17 of 21) intron (NM_001363149, intron 17 of 21) -41971 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 369-326 chr5 68389164 68389325 + 3 NA Intergenic L1MCc|LINE|L1 96667 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 530-157 chr21 33013777 33014110 + 3 NA Intergenic L1M1|LINE|L1 -11992 NM_005806 10215 Hs.176977 NM_005806 ENSG00000205927 OLIG2 BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19 oligodendrocyte transcription factor 2 protein-coding 609-111 chr5 128845515 128845888 + 3 NA Intergenic L1MA1|LINE|L1 -119426 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 402-335 chr8 48117236 48117397 + 3 NA Intergenic Intergenic 108885 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 585-73 chr2 95146441 95146698 + 3 NA 3' UTR (NM_032788, exon 5 of 5) 3' UTR (NM_032788, exon 5 of 5) 13016 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 481-59 chr11 98191777 98192008 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -829057 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 489-115 chr18 6655423 6655753 + 3 NA Intergenic Intergenic -74128 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 531-52 chr13 63066023 63066255 + 3 NA Intergenic L1MC5a|LINE|L1 -258780 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 752-36 chr2 49322008 49322517 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -167735 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 963-19 chr19 15946575 15947083 + 3 NA Intergenic Intergenic -2179 NM_001004465 126541 Hs.553579 NM_001004465 ENSG00000176231 OR10H4 OR19-28 olfactory receptor family 10 subfamily H member 4 protein-coding 889-35 chr7 145445997 145446633 + 3 NA Intergenic Intergenic -610262 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 403-279 chr7 25577553 25577804 + 3 NA Intergenic Intergenic 85462 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 549-146 chr3 130613834 130614109 + 3 NA intron (NM_001102608, intron 22 of 35) L1PREC2|LINE|L1 53637 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 376-135 chr17 12370318 12370451 + 3 NA Intergenic L2|LINE|L2 -179584 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 443-96 chr14 70891283 70891559 + 3 NA Intergenic Intergenic -16038 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 530-216 chr6 76017599 76017891 + 3 NA intron (NM_001563, intron 7 of 16) AluSx1|SINE|Alu 54917 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 480-199 chr3 145357970 145358250 + 3 NA Intergenic MER57C2|LTR|ERV1 711075 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 290-480 chr9 28037856 28038098 + 3 NA intron (NM_152570, intron 5 of 6) MIR|SINE|MIR -464111 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 507-212 chr6 25954982 25955249 + 3 NA Intergenic AluJo|SINE|Alu -7687 NM_006355 10475 Hs.584851 NM_006355 ENSG00000112343 TRIM38 RNF15|RORET tripartite motif containing 38 protein-coding 416-31 chr10 21902761 21902984 + 3 NA intron (NM_022365, intron 7 of 11) intron (NM_022365, intron 7 of 11) 100858 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 544-25 chr10 23730749 23731103 + 3 NA intron (NM_001098500, intron 1 of 18) L1MC1|LINE|L1 36199 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 229-331 chr6 22444238 22444324 + 3 NA Intergenic Intergenic -125285 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 449-32 chr10 73904441 73904600 + 3 NA Intergenic Intergenic -6581 NM_001145031 5328 Hs.77274 NM_002658 ENSG00000122861 PLAU ATF|BDPLT5|QPD|UPA|URK|u-PA plasminogen activator, urokinase protein-coding 568-48 chr14 49017209 49017559 + 3 NA Intergenic Intergenic 568996 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 289-353 chr4 181945922 181946042 + 3 NA Intergenic Intergenic -116009 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 471-4 chr1 63954791 63955047 + 3 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 157286 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 517-66 chr13 49840021 49840321 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -47489 NM_002267 3839 Hs.527919 NM_002267 ENSG00000102753 KPNA3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 karyopherin subunit alpha 3 protein-coding 683-46 chr21 29529054 29529344 + 3 NA Intergenic Intergenic 33152 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 383-194 chr2 101677674 101677859 + 3 NA Intergenic Intergenic -19937 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 449-98 chr17 40760849 40761118 + 3 NA Intergenic L1MA8|LINE|L1 -5652 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 646-96 chr4 132894087 132894436 + 3 NA Intergenic L1MA8|LINE|L1 254855 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 442-260 chr6 116858600 116858849 + 3 NA Intergenic L1ME3|LINE|L1 -18518 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 387-405 chrX 95782520 95782696 + 3 NA Intergenic L1MEc|LINE|L1 555294 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 165-29 chr14 43597175 43597271 + 3 NA Intergenic MER89-int|LTR|ERV1 910060 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 861-30 chr8 20185796 20186143 + 3 NA Intergenic (AATTTAT)n|Simple_repeat|Simple_repeat -2763 NM_001135691 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 552-154 chr4 61074759 61075052 + 3 NA Intergenic L2a|LINE|L2 -68751 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 283-385 chr5 169286232 169286348 + 3 NA intron (NM_003062, intron 1 of 35) intron (NM_003062, intron 1 of 35) 14849 NM_003062 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 455-12 chr1 111065738 111066002 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -73513 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 393-308 chr6 62191338 62191555 + 3 NA intron (NR_146874, intron 1 of 13) L2c|LINE|L2 94779 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 399-16 chr1 181155695 181155849 + 3 NA Intergenic L1M5|LINE|L1 -18712 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 440-67 chr14 45446222 45446468 + 3 NA Intergenic L1M5|LINE|L1 -193143 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 614-68 chr20 40343161 40343394 + 3 NA Intergenic L1MA9|LINE|L1 338816 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 601-54 chr17 22699591 22700070 + 3 NA Intergenic L1ME1|LINE|L1 176719 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 468-171 chr20 16922214 16922385 + 3 NA Intergenic Intergenic 173946 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 864-33 chr5 21604281 21604749 + 3 NA Intergenic Intergenic 145035 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 419-123 chr18 26488145 26488332 + 3 NA intron (NM_001258221, intron 2 of 4) intron (NM_001258221, intron 2 of 4) 60315 NM_001142730 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5 potassium channel tetramerization domain containing 1 protein-coding 1055-5 chr14 56977518 56978212 + 3 NA Intergenic Intergenic 164707 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 704-92 chr9 117591530 117591911 + 3 NA Intergenic Intergenic -56886 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 294-106 chr14 25657635 25657766 + 3 NA Intergenic Intergenic -607403 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 390-220 chr21 44586538 44586696 + 3 NA intron (NM_144991, intron 1 of 11) L1MB7|LINE|L1 5888 NM_198688 386674 Hs.689666 NM_198688 ENSG00000188155 KRTAP10-6 KAP10.6|KAP18.6|KRTAP18-6|KRTAP18.6 keratin associated protein 10-6 protein-coding 331-572 chrX 88373023 88373154 + 3 NA Intergenic Intergenic -374137 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 713-51 chr21 44581965 44582327 + 3 NA intron (NM_144991, intron 1 of 11) intron (NM_144991, intron 1 of 11) -1542 NM_198694 386680 Hs.688629 NM_198694 ENSG00000241123 KRTAP10-5 KAP10.5|KAP18-5|KAP18.5|KRTAP10.5|KRTAP18-5|KRTAP18.1|KRTAP18.5 keratin associated protein 10-5 protein-coding 663-42 chr17 53943682 53944107 + 3 NA Intergenic (TCAA)n|Simple_repeat|Simple_repeat 120967 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 423-3 chr1 45777828 45778090 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger -25648 NM_001324320 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 538-125 chr2 128962279 128962504 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 97791 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 388-224 chr3 45277379 45277540 + 3 NA Intergenic L1MA4|LINE|L1 -51172 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 629-104 chr5 148301360 148301721 + 3 NA intron (NR_105057, intron 3 of 4) Tigger1|DNA|TcMar-Tigger -10883 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 435-43 chr10 121024440 121024642 + 3 NA Intergenic L1M5|LINE|L1 173179 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 347-209 chr2 47940415 47940595 + 3 NA Intergenic L1ME4a|LINE|L1 -34712 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 286-186 chr2 8716842 8717031 + 3 NA Intergenic L1MC|LINE|L1 34880 NM_002166 3398 Hs.180919 NM_002166 ENSG00000115738 ID2 GIG8|ID2A|ID2H|bHLHb26 inhibitor of DNA binding 2 protein-coding 801-54 chr7 53366452 53366926 + 3 NA Intergenic LTR87|LTR|ERVL? 331056 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 594-161 chr9 31438069 31438350 + 3 NA Intergenic Intergenic -56719 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 486-124 chr19 28998812 28998999 + 3 NA Intergenic Intergenic -3650 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 436-93 chr15 91673932 91674158 + 3 NA Intergenic L1MEc|LINE|L1 -179663 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 645-4 chr1 34494404 34494917 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 175034 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 380-112 chr14 22801283 22801440 + 3 NA intron (NM_001126105, intron 3 of 10) L2c|LINE|L2 14074 NR_040448 9056 Hs.513147 NM_003982 ENSG00000155465 SLC7A7 LAT3|LPI|MOP-2|Y+LAT1|y+LAT-1 solute carrier family 7 member 7 protein-coding 601-97 chr3 123848587 123848966 + 3 NA intron (NM_001321309, intron 2 of 32) MLT1J|LTR|ERVL-MaLR 35556 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 508-100 chr2 67981282 67981495 + 3 NA Intergenic L1MEc|LINE|L1 81616 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 488-175 chr3 105119728 105120059 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -246820 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 273-38 chr10 11242092 11242244 + 3 NA intron (NM_001025076, intron 3 of 13) intron (NM_001025076, intron 3 of 13) 77138 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 433-181 chr3 137675547 137675781 + 3 NA Intergenic L1MA3|LINE|L1 -88651 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 459-93 chr15 76611085 76611373 + 3 NA intron (NR_148227, intron 22 of 32) L1M3|LINE|L1 24582 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 404-37 chr10 44221480 44221648 + 3 NA Intergenic L1ME3A|LINE|L1 -71186 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 855-9 chr12 12424906 12425316 + 3 NA intron (NM_001300742, intron 2 of 3).2 L1PA6|LINE|L1 68033 NM_001330356 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 536-102 chr18 6699406 6699704 + 3 NA Intergenic L1ME1|LINE|L1 -30161 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 484-250 chr7 64626320 64626501 + 3 NA Intergenic BSR/Beta|Satellite|Satellite -39673 NM_001282359 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 435-19 chr1 176530817 176531033 + 3 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 67750 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 1061-10 chr2 192956361 192957095 + 3 NA Intergenic L1ME1|LINE|L1 206883 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 727-28 chr14 44837473 44838072 + 3 NA Intergenic Intergenic -38646 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 360-481 chr8 138531681 138531857 + 3 NA Intergenic MamGypLTR3a|LTR|Gypsy -34039 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 470-274 chr8 118833559 118833893 + 3 NA Intergenic Intergenic 118159 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 449-33 chr10 81678797 81679071 + 3 NA Intergenic Intergenic -196260 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 361-355 chr5 35459884 35460144 + 3 NA Intergenic Intergenic -157849 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 263-270 chr3 165038837 165039033 + 3 NA intron (NM_001041, intron 20 of 47) intron (NM_001041, intron 20 of 47) 39561 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 468-254 chr5 81881825 81882059 + 3 NA Intergenic Intergenic -90081 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 568-132 chr3 44592472 44592794 + 3 NA intron (NM_001351734, intron 2 of 6).2 intron (NM_001351734, intron 2 of 6).2 7669 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 618-82 chr3 88361711 88362025 + 3 NA intron (NM_001368167, intron 2 of 2) L1MA4|LINE|L1 23412 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 234-22 chr1 190204332 190204459 + 3 NA intron (NM_199051, intron 6 of 7) L3|LINE|CR1 271615 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 214-165 chr2 101214276 101214363 + 3 NA Intergenic Intergenic -38567 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 445-254 chr7 71919437 71919633 + 3 NA intron (NM_001363460, intron 4 of 5) L2c|LINE|L2 417856 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 739-67 chr8 43663886 43664372 + 3 NA Intergenic ALR/Alpha|Satellite|centr 371687 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 406-250 chr5 158202216 158202372 + 3 NA Intergenic Intergenic 207479 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 458-31 chr10 110002995 110003218 + 3 NA intron (NM_001320591, intron 1 of 15) intron (NM_001320591, intron 1 of 15) -2841 NM_001320592 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 382-269 chr3 81413841 81414030 + 3 NA Intergenic Intergenic 347710 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 789-43 chr7 69072028 69072359 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR 525431 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 277-153 chr17 70218863 70218977 + 3 NA Intergenic Intergenic 49385 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 465-15 chr1 241017508 241017787 + 3 NA intron (NM_001350116, intron 3 of 16) L1MCb|LINE|L1 -114625 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 506-80 chr13 112157968 112158177 + 3 NA intron (NR_134944, intron 1 of 1) intron (NR_134944, intron 1 of 1) 2638 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 2415 chr17 61699741 61701556 + 3 NA intron (NM_032043, intron 17 of 19) L1MB7|LINE|L1 -109429 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 404-33 chr10 42771237 42771414 + 3 NA Intergenic Intergenic -11470 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 280-21 chr1 118752674 118752794 + 3 NA Intergenic Intergenic 235609 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 322-262 chr2 116527130 116527255 + 3 NA Intergenic Intergenic 1183377 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 416-239 chr3 194302003 194302176 + 3 NA non-coding (NR_024480, exon 3 of 3) non-coding (NR_024480, exon 3 of 3) 10715 NR_024480 100131551 Hs.128066 NR_024480 ENSG00000214145 LINC00887 HEIRCC long intergenic non-protein coding RNA 887 ncRNA 405-124 chr19 37416239 37416506 + 3 NA intron (NM_001330482, intron 4 of 4) intron (NM_001330482, intron 4 of 4) 45273 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 573-33 chr11 15637770 15638041 + 3 NA Intergenic Intergenic -5980 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 438-10 chr1 69921303 69921497 + 3 NA intron (NM_001370785, intron 7 of 26) intron (NM_001370785, intron 7 of 26) 2078 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 340-541 chr8 100295558 100295719 + 3 NA intron (NM_001280539, intron 2 of 10) intron (NM_001280539, intron 2 of 10) 6555 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 776-25 chr2 108329251 108329830 + 3 NA intron (NR_037191, intron 3 of 3) intron (NR_037191, intron 3 of 3) 7302 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 445-34 chr11 37551246 37551401 + 3 NA Intergenic Intergenic -387278 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 439-182 chr3 62686457 62686634 + 3 NA intron (NM_003716, intron 3 of 29) intron (NM_003716, intron 3 of 29) 188871 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 517-87 chr15 93467191 93467432 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR 261245 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 438-164 chr3 6261178 6261433 + 3 NA Intergenic Intergenic 544144 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 442-103 chr17 65836136 65836408 + 3 NA intron (NM_001353129, intron 21 of 26) L1MA4|LINE|L1 -9729 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 408-203 chr3 3029603 3029826 + 3 NA intron (NM_001206956, intron 6 of 15) MIR|SINE|MIR 31431 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 550-183 chr5 68690780 68691115 + 3 NA Intergenic L1ME3C|LINE|L1 338980 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 369-177 chr19 37698267 37698465 + 3 NA exon (NM_032689, exon 5 of 5) exon (NM_032689, exon 5 of 5) -6051 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 511-240 chr7 1969720 1969924 + 3 NA intron (NM_001013837, intron 15 of 18) L1MEf|LINE|L1 -29251 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 522-247 chr8 76316926 76317151 + 3 NA Intergenic L1MEd|LINE|L1 -89616 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 956-2 chr1 178598941 178599329 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 56339 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 455-183 chr4 59229715 59229956 + 3 NA Intergenic Intergenic 216262 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 655-36 chr14 42669481 42669813 + 3 NA Intergenic Intergenic 1062791 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 214-111 chr15 97943031 97943168 + 3 NA Intergenic MLT2B3|LTR|ERVL -17604 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 382-105 chr14 43281734 43281917 + 3 NA Intergenic MLT2B3|LTR|ERVL 1225458 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 553-27 chr11 33125055 33125332 + 3 NA intron (NM_001326, intron 3 of 20) L1MEd|LINE|L1 36287 NM_001326 1479 Hs.44402 NM_001326 ENSG00000176102 CSTF3 CSTF-77 cleavage stimulation factor subunit 3 protein-coding 658-61 chr2 2822827 2823167 + 3 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 303029 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 573-83 chr18 67744145 67744447 + 3 NA intron (NR_033921, intron 1 of 4) L1PA10|LINE|L1 70526 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 566-149 chr4 160463479 160463750 + 3 NA Intergenic LTR1D|LTR|ERV1 -685830 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 636-19 chr11 40625775 40626041 + 3 NA intron (NM_020929, intron 2 of 4) L2a|LINE|L2 -332778 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 929-30 chr5 158284388 158284832 + 3 NA Intergenic L2|LINE|L2 125163 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 450-270 chr7 685966 686131 + 3 NA intron (NM_001164760, intron 2 of 10) AluY|SINE|Alu 26476 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 409-309 chr9 75482492 75482719 + 3 NA Intergenic Intergenic 394091 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 306-131 chr13 89852150 89852257 + 3 NA Intergenic Intergenic 267514 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 737-68 chr5 109939176 109939585 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 56198 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 520-294 chr8 84056934 84057232 + 3 NA Intergenic Intergenic -125704 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 526-24 chr10 105547320 105547545 + 3 NA Intergenic Intergenic 272901 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 462-279 chr8 73182470 73182647 + 3 NA Intergenic Kanga1d|DNA|TcMar-Tc2 76944 NM_001243237 100130301 Hs.202296 NM_001243237 ENSG00000274443 C8orf89 - chromosome 8 open reading frame 89 protein-coding 864-9 chr13 86662231 86662624 + 3 NA Intergenic Intergenic -249493 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 401-297 chr7 46870483 46870727 + 3 NA Intergenic Intergenic -173483 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 771-59 chr4 61081955 61082316 + 3 NA Intergenic Intergenic -61521 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 193-187 chr7 50803295 50803367 + 3 NA Intergenic MIRb|SINE|MIR -9878 NM_001371008 439-87 chr14 45451907 45452126 + 3 NA Intergenic L1MA4A|LINE|L1 -198814 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 499-198 chr5 23091175 23091559 + 3 NA Intergenic Intergenic -238023 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 1183-2 chr19 34917830 34918548 + 3 NA Intergenic LTR8A|LTR|ERV1 8637 NR_110749 102723513 Hs.149702 NR_110749 ZNF30-AS1 - ZNF30 antisense RNA 1 ncRNA 498-123 chr2 79255732 79255961 + 3 NA Intergenic Intergenic -96093 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 431-67 chr12 66341641 66341831 + 3 NA intron (NM_033647, intron 13 of 13) THE1D|LTR|ERVL-MaLR 39191 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 399-190 chr21 25522243 25522409 + 3 NA Intergenic L1M1|LINE|L1 -39819 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene ncRNA 500-13 chr1 193896227 193896469 + 3 NA Intergenic LTR67B|LTR|ERVL 591603 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 477-106 chr16 5783006 5783273 + 3 NA Intergenic Intergenic 150672 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 373-203 chr2 119799295 119799461 + 3 NA intron (NM_002830, intron 1 of 26) intron (NM_002830, intron 1 of 26) 39456 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 543-133 chr2 148089169 148089400 + 3 NA intron (NM_018328, intron 2 of 14) L1PB1|LINE|L1 -67680 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 513-208 chr4 73393215 73393517 + 3 NA Intergenic Intergenic -10921 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 512-159 chr3 18576145 18576330 + 3 NA Intergenic Intergenic -130645 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 489-77 chr14 66436487 66436752 + 3 NA Intergenic Intergenic -49752 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 425-185 chr3 82742341 82742583 + 3 NA Intergenic Intergenic 756320 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 447-161 chr22 40877618 40877804 + 3 NA intron (NM_022098, intron 2 of 9) intron (NM_022098, intron 2 of 9) -15598 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 749-4 chr1 69140719 69141183 + 3 NA intron (NR_146608, intron 3 of 4) L1MEc|LINE|L1 85053 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 298-294 chr3 66208778 66208937 + 3 NA intron (NM_173471, intron 1 of 10) (TA)n|Simple_repeat|Simple_repeat -11885 NM_001350993 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 298-28 chr1 225164922 225165083 + 3 NA intron (NM_001367479, intron 35 of 85) L1MEh|LINE|L1 235327 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 455-140 chr2 218365504 218365686 + 3 NA intron (NM_001320865, intron 7 of 9) intron (NM_001320865, intron 7 of 9) 2307 NR_110573 101928513 Hs.512386 NR_110573 ENSG00000225062 CATIP-AS1 - CATIP antisense RNA 1 ncRNA 494-227 chr5 54224307 54224509 + 3 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 86165 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 608-111 chr4 67845276 67845588 + 3 NA intron (NM_004262, intron 3 of 9) intron (NM_004262, intron 3 of 9) 38570 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 637-3 chr1 90424765 90425189 + 3 NA Intergenic L1MA2|LINE|L1 -232773 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 352-514 chr7 151670719 151670914 + 3 NA intron (NM_016203, intron 4 of 15) L2c|LINE|L2 -38198 NM_001304531 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 507-16 chr1 188284035 188284286 + 3 NA Intergenic Intergenic 840532 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 562-60 chr14 76040535 76040809 + 3 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 54909 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 864-14 chr14 88108383 88108889 + 3 NA Intergenic Intergenic -82324 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 854-35 chr4 78172866 78173395 + 3 NA intron (NM_001166133, intron 2 of 41) MamGypLTR1d|LTR|Gypsy 115560 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 454-100 chr15 23535200 23535374 + 3 NA Intergenic AluY|SINE|Alu 26844 NR_039731 100616275 NR_039731 ENSG00000265673 MIR4508 mir-4508 microRNA 4508 ncRNA 488-166 chr22 34545734 34545920 + 3 NA Intergenic L1P3|LINE|L1 452089 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 841-38 chr7 28204348 28204956 + 3 NA intron (NR_034097, intron 2 of 3) MIR|SINE|MIR -23857 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 672-5 chr1 218674035 218674397 + 3 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 164121 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 336-105 chr11 84274278 84274433 + 3 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -1075 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 465-179 chr3 117237173 117237411 + 3 NA Intergenic Intergenic 315861 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 221-278 chr7 37340110 37340202 + 3 NA intron (NM_001206480, intron 2 of 21) L1MC4|LINE|L1 13512 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 752-73 chr8 114796253 114796761 + 3 NA Intergenic Intergenic 871506 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 564-205 chr8 135375712 135375947 + 3 NA Intergenic MIRc|SINE|MIR -81627 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 527-99 chr15 101817337 101817569 + 3 NA promoter-TSS (NM_001001674) promoter-TSS (NM_001001674) -734 NM_001001674 390649 Hs.554589 NM_001001674 ENSG00000182854 OR4F15 - olfactory receptor family 4 subfamily F member 15 protein-coding 1445-2 chr8 134423355 134424379 + 3 NA Intergenic Intergenic -174204 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 560-71 chr18 7530308 7530576 + 3 NA Intergenic Intergenic -36874 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 735-13 chr12 16139695 16140002 + 3 NA Intergenic Intergenic 137837 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 334-246 chr2 17626809 17626992 + 3 NA intron (NM_001366805, intron 2 of 2) intron (NM_001366805, intron 2 of 2) 86204 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 349-217 chr18 59331845 59332003 + 3 NA intron (NM_005570, intron 11 of 12) MER94|DNA|hAT-Blackjack -13275 NM_181654 339302 Hs.449884 NM_181654 ENSG00000166569 CPLX4 CPX-IV|CPXIV complexin 4 protein-coding 484-187 chr4 37097667 37097892 + 3 NA Intergenic Intergenic 96000 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 451-174 chr5 36523429 36523617 + 3 NA Intergenic Intergenic -82832 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 493-55 chr12 23801647 23801852 + 3 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 147921 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 547-233 chr8 36324850 36325140 + 3 NA Intergenic Intergenic -459379 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 518-310 chr9 27308194 27308441 + 3 NA Intergenic HAL1|LINE|L1 -11167 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 527-46 chr11 43723084 43723458 + 3 NA intron (NM_016142, intron 1 of 10) intron (NM_016142, intron 1 of 10) 42533 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 602-135 chr8 131193082 131193464 + 3 NA Intergenic L1MC3|LINE|L1 -152364 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 591-96 chr3 5582052 5582316 + 3 NA Intergenic Intergenic -331929 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 617-111 chr5 132905779 132905999 + 3 NA intron (NM_014423, intron 5 of 20) L1MB7|LINE|L1 32221 NM_052971 116842 Hs.337588 NM_052971 ENSG00000164406 LEAP2 LEAP-2 liver enriched antimicrobial peptide 2 protein-coding 575-136 chr4 62394316 62394598 + 3 NA Intergenic L2a|LINE|L2 -232692 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 552-225 chr9 93843792 93843992 + 3 NA Intergenic L1MA4|LINE|L1 24535 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 487-258 chr6 165903921 165904230 + 3 NA Intergenic L2|LINE|L2 -83476 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 875-15 chr18 28318815 28319278 + 3 NA Intergenic L1ME3A|LINE|L1 -141916 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 462-39 chr11 15563091 15563394 + 3 NA Intergenic Intergenic -80643 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 346-349 chr4 47740129 47740302 + 3 NA intron (NM_006587, intron 5 of 21) L1MB7|LINE|L1 87546 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 385-125 chr16 63158897 63159069 + 3 NA Intergenic Intergenic -1122545 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 456-355 chrX 137089023 137089298 + 3 NA Intergenic AluSz|SINE|Alu -57486 NM_054021 83550 Hs.350569 NM_054021 ENSG00000165370 GPR101 GPCR6|PAGH2|PITA2 G protein-coupled receptor 101 protein-coding 518-286 chr7 141257909 141258215 + 3 NA intron (NM_001195278, intron 2 of 3) L1M4a2|LINE|L1 183998 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 238-23 chr1 185798987 185799139 + 3 NA intron (NM_031935, intron 1 of 106) L1PA15-16|LINE|L1 64672 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 484-174 chr3 68641804 68642004 + 3 NA Intergenic L1P4e|LINE|L1 141267 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 429-21 chr1 188173266 188173522 + 3 NA Intergenic MIR|SINE|MIR 729766 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 386-323 chr7 29351878 29352131 + 3 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -127708 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 435-235 chr8 59198127 59198417 + 3 NA Intergenic L1MC3|LINE|L1 79062 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 1435-3 chr3 96676163 96676860 + 3 NA Intergenic Intergenic -138083 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 376-109 chr14 72320734 72320986 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -195960 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 1134-5 chr14 61958593 61959347 + 3 NA intron (NM_001367663, intron 1 of 7) L1MA10|LINE|L1 31275 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 473-204 chr4 179926819 179927096 + 3 NA Intergenic L1PA13|LINE|L1 1232192 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 505-176 chr20 24404368 24404665 + 3 NA Intergenic L1MB7|LINE|L1 -64683 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 582-30 chr12 54929399 54929708 + 3 NA Intergenic HERV35I-int|LTR|ERV1 44179 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 397-273 chr6 11230381 11230571 + 3 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) 2192 NM_006403 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 512-34 chr10 44940933 44941277 + 3 NA intron (NR_033842, intron 1 of 7) L1MB7|LINE|L1 18584 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 217-367 chr8 101400272 101400393 + 3 NA Intergenic L1MC1|LINE|L1 31439 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 831-38 chr5 52287126 52287413 + 3 NA Intergenic MER6A|DNA|TcMar-Tigger 279238 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 472-130 chr18 13928782 13929046 + 3 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -13207 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 432-78 chr13 108726054 108726226 + 3 NA intron (NM_015011, intron 3 of 34) intron (NM_015011, intron 3 of 34) 96529 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 487-38 chr10 42777385 42777622 + 3 NA Intergenic L1MC4|LINE|L1 -5292 NM_014753 9790 Hs.10848 NM_014753 ENSG00000165733 BMS1 ACC|BMS1L BMS1 ribosome biogenesis factor protein-coding 628-51 chr16 6453637 6453863 + 3 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -320059 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 532-201 chr5 29850914 29851195 + 3 NA Intergenic MIRb|SINE|MIR -29506 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 329-332 chr20 54507253 54507491 + 3 NA intron (NM_018431, intron 1 of 7) MER33|DNA|hAT-Charlie 31779 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 630-7 chr10 20760650 20761021 + 3 NA Intergenic Intergenic 136767 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 632-33 chr15 100837743 100838005 + 3 NA Intergenic L1ME4b|LINE|L1 -11878 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 832-24 chr21 28194913 28195377 + 3 NA intron (NR_126012, intron 3 of 5) L1PB4|LINE|L1 33522 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 484-142 chr2 165672843 165673114 + 3 NA intron (NM_024969, intron 3 of 4) intron (NM_024969, intron 3 of 4) 100642 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 514-229 chr5 106731494 106731739 + 3 NA Intergenic L1PREC2|LINE|L1 279398 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 586-131 chr6 51443454 51443822 + 3 NA Intergenic L1MA8|LINE|L1 -178232 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 856-4 chr1 115259544 115260096 + 3 NA Intergenic Intergenic -23214 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 613-67 chr2 213632459 213632764 + 3 NA intron (NR_047660, intron 9 of 14) L1M1|LINE|L1 -125456 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 405-230 chr4 76021584 76021765 + 3 NA 3' UTR (NM_001565, exon 4 of 4) 3' UTR (NM_001565, exon 4 of 4) 1823 NM_001565 3627 Hs.632586 NM_001565 ENSG00000169245 CXCL10 C7|IFI10|INP10|IP-10|SCYB10|crg-2|gIP-10|mob-1 C-X-C motif chemokine ligand 10 protein-coding 452-83 chr14 78705843 78706085 + 3 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 302245 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 247-15 chr1 104784139 104784311 + 3 NA Intergenic Intergenic 711202 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 1148-5 chr3 130349440 130350121 + 3 NA intron (NM_001278298, intron 1 of 40) MLT1J|LTR|ERVL-MaLR 4264 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 415-256 chr7 47645940 47646140 + 3 NA Intergenic Intergenic -9204 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 625-40 chr18 3953359 3953763 + 3 NA intron (NM_001242761, intron 3 of 11) L1PB4|LINE|L1 -8792 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 854-30 chr3 164297443 164297831 + 3 NA Intergenic L1ME4b|LINE|L1 -126081 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 355-299 chr22 26503995 26504141 + 3 NA intron (NM_001346861, intron 6 of 14) intron (NM_001346861, intron 6 of 14) 8405 NM_012143 24144 Hs.20225 NM_012143 ENSG00000100109 TFIP11 NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6 tuftelin interacting protein 11 protein-coding 407-188 chr3 24231255 24231462 + 3 NA intron (NM_001354708, intron 2 of 9) intron (NM_001354708, intron 2 of 9) 80034 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 246-123 chr14 72327168 72327345 + 3 NA intron (NM_001370288, intron 2 of 16) MIRb|SINE|MIR -189564 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 542-10 chr1 169369513 169369863 + 3 NA intron (NM_003666, intron 2 of 7) intron (NM_003666, intron 2 of 7) 1493 NM_001320973 8548 Hs.130746 NM_003666 ENSG00000117475 BLZF1 GOLGIN-45|JEM-1|JEM-1s|JEM1 basic leucine zipper nuclear factor 1 protein-coding 380-337 chr6 49241367 49241562 + 3 NA Intergenic Intergenic 221789 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 567-150 chr5 125525841 125526066 + 3 NA intron (NR_109887, intron 3 of 3) L1M7|LINE|L1 32692 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 592-128 chr4 90935074 90935305 + 3 NA intron (NM_001145065, intron 9 of 10) MSTB1|LTR|ERVL-MaLR 700158 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 418-227 chr5 163074026 163074270 + 3 NA Intergenic L1MEf|LINE|L1 -363423 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 530-20 chr1 224937895 224938131 + 3 NA intron (NM_001349912, intron 1 of 5) L1MA4|LINE|L1 8338 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 843-18 chr14 79132164 79132624 + 3 NA intron (NR_073547, intron 14 of 20) Charlie5|DNA|hAT-Charlie -67588 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 572-31 chr12 255924 256180 + 3 NA intron (NR_120482, intron 2 of 2) L2a|LINE|L2 1247 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 558-116 chr20 37489316 37489529 + 3 NA Intergenic LTR33|LTR|ERVL 30881 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 538-76 chr15 86759351 86759684 + 3 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -173363 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 1076-24 chr8 89112243 89112767 + 3 NA Intergenic L1MA9|LINE|L1 645206 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 693-2 chr1 56632874 56633219 + 3 NA intron (NR_135111, intron 2 of 2) intron (NR_135111, intron 2 of 2) -12268 NM_006252 5563 Hs.437039 NM_006252 ENSG00000162409 PRKAA2 AMPK|AMPK2|AMPKa2|PRKAA protein kinase AMP-activated catalytic subunit alpha 2 protein-coding 468-68 chr13 47695545 47695797 + 3 NA Intergenic L1PA16|LINE|L1 236951 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 531-198 chr5 40244056 40244377 + 3 NA Intergenic Intergenic 191925 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 196-82 chr15 47296515 47296587 + 3 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 112462 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 464-88 chr17 16548845 16549109 + 3 NA 3' UTR (NM_001346167, exon 6 of 6) 3' UTR (NM_001346167, exon 6 of 6) 20227 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 414-115 chr17 34205272 34205465 + 3 NA Intergenic Intergenic -21736 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 354-331 chr4 64427726 64427961 + 3 NA Intergenic Intergenic -18383 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 463-80 chr13 86558675 86558951 + 3 NA Intergenic Intergenic -353107 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 363-314 chr4 32678482 32678631 + 3 NA Intergenic L1MEd|LINE|L1 327518 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 343-346 chr3 96741274 96741532 + 3 NA Intergenic Intergenic -73191 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 401-86 chr14 45493907 45494119 + 3 NA Intergenic MIR|SINE|MIR 221589 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 524-28 chr10 43477095 43477413 + 3 NA intron (NM_001355444, intron 3 of 3) AluSz6|SINE|Alu 40143 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 692-26 chr14 62458547 62458866 + 3 NA Intergenic L1MB8|LINE|L1 -318733 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 877-14 chr2 63672773 63673140 + 3 NA Intergenic AluJo|SINE|Alu 83805 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 427-90 chr16 72606942 72607110 + 3 NA intron (NR_159372, intron 1 of 7) L1MB8|LINE|L1 57944 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 431-248 chr6 84297863 84298105 + 3 NA Intergenic Intergenic -70341 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 340-556 chr8 134763354 134763547 + 3 NA Intergenic L2a|LINE|L2 37157 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 285-216 chr2 153997247 153997433 + 3 NA intron (NM_052917, intron 3 of 12) L1MA6|LINE|L1 52946 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 326-580 chrX 13205063 13205190 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger 98326 NR_146309 109729169 Hs.348675 NR_146309 LINC02154 - long intergenic non-protein coding RNA 2154 ncRNA 497-108 chr19 43848391 43848588 + 3 NA exon (NM_181845, exon 7 of 7) exon (NM_181845, exon 7 of 7) 21168 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 410-217 chr4 67249989 67250163 + 3 NA Intergenic Intergenic 171924 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 376-228 chr21 18673956 18674187 + 3 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 12093 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 540-23 chr1 219114430 219114715 + 3 NA intron (NR_038845, intron 3 of 4) L1PA13|LINE|L1 59216 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 512-78 chr14 67139211 67139450 + 3 NA intron (NM_001024218, intron 16 of 21) FAM|SINE|Alu -50110 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 433-76 chr14 59450601 59450919 + 3 NA Intergenic L1MEc|LINE|L1 14620 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 900-34 chr5 36071952 36072474 + 3 NA Intergenic Intergenic -5331 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 430-194 chr3 76411273 76411565 + 3 NA Intergenic Intergenic -625870 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 636-129 chr6 121939865 121940156 + 3 NA Intergenic L1M4|LINE|L1 -459541 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 579-90 chr21 19662154 19662578 + 3 NA Intergenic Tigger4|DNA|TcMar-Tigger 237389 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 499-214 chr5 156210194 156210470 + 3 NA Intergenic L1MA8|LINE|L1 -116425 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 378-103 chr12 27317452 27317733 + 3 NA intron (NM_015000, intron 10 of 13) intron (NM_015000, intron 10 of 13) -15244 NM_001248002 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 1032-10 chr19 37631310 37631952 + 3 NA 3' UTR (NM_001320671, exon 6 of 6) 3' UTR (NM_001320671, exon 6 of 6) 23834 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 425-307 chr8 106152162 106152350 + 3 NA Intergenic Intergenic -91753 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 217-99 chr13 38637020 38637166 + 3 NA intron (NR_126377, intron 2 of 2) intron (NR_126377, intron 2 of 2) 49582 NR_126377 101929121 Hs.618449 NR_126377 LINC00437 TCONS_00021639 long intergenic non-protein coding RNA 437 ncRNA 551-151 chr5 40175938 40176124 + 3 NA Intergenic Intergenic 123740 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 427-84 chr15 100541523 100541695 + 3 NA intron (NM_178842, intron 1 of 12) intron (NM_178842, intron 1 of 12) 2677 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 316-5 chr1 38488052 38488262 + 3 NA Intergenic Intergenic 12961 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 523-205 chr4 100276126 100276400 + 3 NA Intergenic Intergenic -85795 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 477-266 chr7 147381685 147381981 + 3 NA intron (NM_014141, intron 8 of 22) intron (NM_014141, intron 8 of 22) -3712 NR_031645 100313895 NR_031645 ENSG00000221442 MIR548F4 MIR548F-4|MIRN548F4|hsa-mir-548f-4 microRNA 548f-4 ncRNA 439-254 chr6 161793914 161794096 + 3 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 323028 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 250-371 chr6 27437301 27437486 + 3 NA intron (NR_144688, intron 5 of 8) MLT1E3|LTR|ERVL-MaLR 35505 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 472-339 chr9 1063120 1063347 + 3 NA Intergenic Intergenic 11746 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 417-8 chr1 69948939 69949112 + 3 NA intron (NM_001370785, intron 8 of 26) intron (NM_001370785, intron 8 of 26) 29703 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 607-11 chr1 180776938 180777324 + 3 NA intron (NR_137330, intron 2 of 12) MIR3|SINE|MIR -135766 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 373-391 chr7 84859431 84859568 + 3 NA Intergenic Intergenic 262432 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 354-406 chr6 109560125 109560353 + 3 NA intron (NM_001145128, intron 24 of 40) L1MEc|LINE|L1 -77002 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 663-52 chr19 51780796 51781178 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -14170 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 297-257 chr20 13500220 13500344 + 3 NA intron (NR_136631, intron 10 of 13) L1MEg|LINE|L1 138650 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 822-38 chr21 29968807 29969331 + 3 NA Intergenic L1MEc|LINE|L1 -29017 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 603-104 chr22 44134185 44134452 + 3 NA intron (NM_001243386, intron 6 of 11) intron (NM_001243386, intron 6 of 11) -38638 NM_001137605 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 488-11 chr1 157438364 157438629 + 3 NA Intergenic MLT2B4|LTR|ERVL 114019 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 687-63 chr2 115683947 115684289 + 3 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 340303 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 749-45 chr19 12266409 12266836 + 3 NA Intergenic Intergenic 27990 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 519-69 chr15 96677578 96677878 + 3 NA Intergenic Intergenic 103926 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 593-53 chr16 77323812 77324060 + 3 NA intron (NM_199355, intron 13 of 22) intron (NM_199355, intron 13 of 22) 111098 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 1019-7 chr15 92215145 92215754 + 3 NA Intergenic L1MC|LINE|L1 -178432 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 339-223 chr18 5991798 5991935 + 3 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -95912 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 466-206 chr5 64549481 64549722 + 3 NA intron (NM_001029875, intron 2 of 5) MLT1A-int|LTR|ERVL-MaLR -26049 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 892-3 chr1 185437226 185437707 + 3 NA Intergenic Intergenic -102427 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 442-140 chr2 114867284 114867509 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -33848 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 283-239 chr2 112080888 112081003 + 3 NA intron (NM_001329914, intron 6 of 18) intron (NM_001329914, intron 6 of 18) 25676 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 472-292 chr7 17271216 17271385 + 3 NA Intergenic Intergenic -27352 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 607-158 chr9 118669631 118670072 + 3 NA Intergenic Intergenic -9820 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 516-269 chr9 79409207 79409520 + 3 NA Intergenic MIRb|SINE|MIR -162410 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 531-202 chr5 105950797 105951147 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 851498 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 365-176 chr2 90171 90391 + 3 NA Intergenic L1MC|LINE|L1 -43776 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 502-253 chr8 26308518 26308852 + 3 NA intron (NM_001177591, intron 2 of 9) Tigger1|DNA|TcMar-Tigger 15469 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 423-172 chr3 6968407 6968696 + 3 NA intron (NM_000844, intron 1 of 9) MIR|SINE|MIR -74534 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 531-264 chr9 78677562 78677852 + 3 NA Intergenic Intergenic 380582 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 816-26 chr2 167669462 167669922 + 3 NA Intergenic Intergenic -148980 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 1208 chr11 87548706 87549401 + 3 NA Intergenic L1MEi|LINE|L1 170358 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 328-58 chr10 98586989 98587190 + 3 NA intron (NM_021828, intron 9 of 11) (ATC)n|Simple_repeat|Simple_repeat -140126 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 1417-5 chr21 26981193 26981980 + 3 NA Intergenic L1MEi|LINE|L1 -14498 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 382-247 chr22 24710876 24711074 + 3 NA Intergenic L1M4|LINE|L1 -51828 NR_024593 646074 Hs.531306 NM_001025230 POM121L10P - POM121 transmembrane nucleoporin like 10, pseudogene pseudo 282-365 chr5 23364918 23365129 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -142586 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 1854 chr4 32499620 32500639 + 3 NA Intergenic L1MB8|LINE|L1 149091 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 635-96 chr6 144664897 144665130 + 3 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 259358 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 463-188 chr3 84643339 84643529 + 3 NA intron (NR_033860, intron 20 of 20) intron (NR_033860, intron 20 of 20) 226141 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 738-38 chr20 39903024 39903448 + 3 NA Intergenic L1MA10|LINE|L1 -101225 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 254-329 chr5 153332281 153332382 + 3 NA Intergenic Intergenic -158193 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 389-99 chr14 48716276 48716494 + 3 NA Intergenic Intergenic 869995 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 568-178 chr6 162067425 162067706 + 3 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) 596588 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 382-80 chr12 95566697 95566903 + 3 NA Intergenic Intergenic -15324 NM_032147 84101 Hs.646421 NM_032147 ENSG00000136014 USP44 - ubiquitin specific peptidase 44 protein-coding 523-152 chr20 40852520 40852829 + 3 NA Intergenic Intergenic -128039 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 634-99 chr3 33250111 33250398 + 3 NA Intergenic L1MA2|LINE|L1 -26771 NM_001349319 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 547-50 chr12 34400918 34401112 + 3 NA Intergenic GSATII|Satellite|centr 378519 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 360-143 chr15 67216636 67216803 + 3 NA intron (NM_001271885, intron 5 of 9) intron (NM_001271885, intron 5 of 9) 37942 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 191-160 chr5 1693350 1693468 + 3 NA Intergenic L1ME2z|LINE|L1 15459 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 656-122 chr7 106884015 106884373 + 3 NA exon (NM_002649, exon 9 of 11) exon (NM_002649, exon 9 of 11) 18715 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 508-189 chr5 66523298 66523677 + 3 NA Intergenic Intergenic -11883 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 478-16 chr1 208973139 208973355 + 3 NA intron (NR_146915, intron 1 of 1) intron (NR_146915, intron 1 of 1) 793 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 324-388 chr4 60870464 60870680 + 3 NA Intergenic Intergenic -52047 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 298-76 chr11 81186521 81186643 + 3 NA Intergenic L2a|LINE|L2 -423779 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 509-43 chr11 70950984 70951175 + 3 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -78711 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 668-14 chr11 60569644 60570060 + 3 NA Intergenic L1MB4|LINE|L1 -45899 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 504-270 chr8 138105890 138106082 + 3 NA Intergenic Intergenic -22441 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 796-12 chr12 26761866 26762367 + 3 NA intron (NM_002223, intron 2 of 56) L1M2|LINE|L1 71078 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 377-183 chr19 42616049 42616207 + 3 NA intron (NR_073180, intron 2 of 2) LTR49-int|LTR|ERV1 -21204 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 720-84 chr7 65220252 65220721 + 3 NA intron (NR_146906, intron 15 of 17) AluSx3|SINE|Alu 79456 NR_146905 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 306-392 chr5 36988642 36988817 + 3 NA intron (NM_015384, intron 10 of 45) intron (NM_015384, intron 10 of 45) 111960 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 400-379 chrX 153677727 153677899 + 3 NA intron (NM_001366975, intron 2 of 12) (TA)n|Simple_repeat|Simple_repeat -3452 NM_001039582 139728 Hs.436667 NM_198452 ENSG00000130822 PNCK BSTK3|CaMK1b pregnancy up-regulated nonubiquitous CaM kinase protein-coding 492-84 chr14 48061100 48061319 + 3 NA Intergenic Intergenic -266195 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 494-296 chr8 122373978 122374277 + 3 NA Intergenic Intergenic 194517 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 353-198 chr17 73938328 73938519 + 3 NA Intergenic Intergenic -109886 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 531-68 chr15 62721245 62721440 + 3 NA intron (NM_015059, intron 22 of 55) L1ME3Cz|LINE|L1 74031 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 269-10 chr1 65984307 65984423 + 3 NA intron (NM_002600, intron 3 of 16) L1ME1|LINE|L1 -8251 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 678-3 chr1 213944006 213944412 + 3 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 19460 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 547-243 chr8 107268647 107268871 + 3 NA intron (NM_001199859, intron 7 of 8) intron (NM_001199859, intron 7 of 8) 67756 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 450-108 chr16 80813383 80813660 + 3 NA Intergenic Charlie1|DNA|hAT-Charlie -8923 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 459-237 chr5 61714338 61714519 + 3 NA intron (NR_126524, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat -15996 NR_109910 101928651 Hs.662309 NR_109910 ENSG00000248529 LOC101928651 - uncharacterized LOC101928651 ncRNA 469-112 chr17 66216523 66216742 + 3 NA intron (NM_000042, intron 6 of 7) intron (NM_000042, intron 6 of 7) 12783 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 497-237 chr5 125170764 125171040 + 3 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 134071 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 369-407 chr8 79655625 79655781 + 3 NA intron (NM_007029, intron 4 of 4) intron (NM_007029, intron 4 of 4) 44586 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 563-39 chr12 42934747 42935049 + 3 NA Intergenic L1MC1|LINE|L1 -220417 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 506-259 chr6 157237078 157237292 + 3 NA Intergenic MER121|DNA|hAT? 87074 NM_018452 729515 Hs.157212 NM_018452 ENSG00000215712 TMEM242 BM033|C6orf35 transmembrane protein 242 protein-coding 924-27 chr2 197992133 197992714 + 3 NA intron (NM_006226, intron 1 of 5) AluJb|SINE|Alu 187830 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 511-102 chr19 8813682 8814031 + 3 NA intron (NM_001304350, intron 2 of 4) intron (NM_001304350, intron 2 of 4) 8207 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 398-151 chr2 8770829 8771098 + 3 NA intron (NM_001348732, intron 21 of 28) intron (NM_001348732, intron 21 of 28) 66650 NM_020738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 835-50 chr7 40735865 40736196 + 3 NA intron (NM_024728, intron 13 of 14) L1ME3E|LINE|L1 243909 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 454-20 chr10 23838842 23839150 + 3 NA intron (NM_001098500, intron 1 of 18) L1M6|LINE|L1 144269 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 398-397 chrX 118829093 118829294 + 3 NA Intergenic Intergenic 5369 NM_173798 170261 Hs.21417 NM_173798 ENSG00000174460 ZCCHC12 PNMA7A|SIZN|SIZN1 zinc finger CCHC-type containing 12 protein-coding 783-3 chr1 59798362 59798838 + 3 NA Intergenic L1M4|LINE|L1 -16349 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 807-16 chr14 58663597 58664076 + 3 NA Intergenic Intergenic 24999 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 367-421 chr7 53625917 53626114 + 3 NA Intergenic Intergenic 185916 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 385-396 chr8 136891861 136892036 + 3 NA intron (NR_147196, intron 4 of 5) MIRb|SINE|MIR 361150 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 287-114 chr12 39695882 39696058 + 3 NA intron (NM_001031748, intron 11 of 12) L1M1|LINE|L1 69787 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 445-218 chr5 45989743 45989927 + 3 NA Intergenic ALR/Alpha|Satellite|centr -293455 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 522-214 chr5 129221252 129221461 + 3 NA Intergenic HAL1ME|LINE|L1 123668 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 765-35 chr20 42438880 42439363 + 3 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -246362 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 696-10 chr1 240782976 240783456 + 3 NA intron (NM_001350116, intron 16 of 16) intron (NM_001350116, intron 16 of 16) -171061 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 488-66 chr12 130687507 130687755 + 3 NA intron (NM_001351226, intron 1 of 21) HAL1b|LINE|L1 28668 NM_001351226 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 516-16 chr1 243960239 243960482 + 3 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 42958 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 929-32 chr7 5107686 5108289 + 3 NA Intergenic AluJr|SINE|Alu 35927 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 527-90 chr14 68527605 68527970 + 3 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 101000 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 844-18 chr15 61194956 61195530 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 34059 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 641-28 chr12 34492249 34492497 + 3 NA Intergenic ALR/Alpha|Satellite|centr 469877 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 648-56 chr17 53402071 53402458 + 3 NA Intergenic Intergenic 416759 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 505-273 chr6 104888655 104888938 + 3 NA Intergenic Intergenic -28877 NR_146789 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 531-165 chr3 178631300 178631588 + 3 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 72594 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 687-128 chr9 103534801 103535078 + 3 NA Intergenic L1PA15|LINE|L1 -209906 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 638-11 chr1 247248371 247248729 + 3 NA Intergenic L1MA2|LINE|L1 -7522 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 790-43 chr6 44148002 44148374 + 3 NA intron (NM_001318792, intron 12 of 23) MIR|SINE|MIR -10632 NM_007058 11131 Hs.225953 NM_007058 ENSG00000137225 CAPN11 calpain11 calpain 11 protein-coding 458-150 chr2 192696274 192696577 + 3 NA Intergenic Intergenic -53420 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 703-74 chr5 97209874 97210241 + 3 NA Intergenic Intergenic -26810 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 682-101 chr8 88933867 88934264 + 3 NA Intergenic L1PREC2|LINE|L1 -606582 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 275-285 chr5 32903605 32903797 + 3 NA Intergenic L1ME3|LINE|L1 -43742 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 531-235 chr8 6687493 6687784 + 3 NA intron (NR_125386, intron 1 of 4) intron (NR_125386, intron 1 of 4) 20571 NR_125386 100507530 Hs.490892 NR_125386 MCPH1-AS1 - MCPH1 antisense RNA 1 ncRNA 520-28 chr10 15921870 15922220 + 3 NA Intergenic L1MD3|LINE|L1 -61512 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 818-8 chr11 29893045 29893446 + 3 NA Intergenic L1MA8|LINE|L1 89148 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 570-96 chr18 367492 367923 + 3 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -99660 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 369-85 chr12 60857694 60857890 + 3 NA Intergenic L1ME2|LINE|L1 1168422 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 293-216 chr2 181161331 181161527 + 3 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 37592 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 281-176 chr18 34863151 34863345 + 3 NA intron (NM_001198945, intron 9 of 10) intron (NM_001198945, intron 9 of 10) 44867 NM_032980 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 622-12 chr11 10202084 10202447 + 3 NA intron (NM_030962, intron 1 of 39) L2|LINE|L2 91942 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 515-78 chr16 12383058 12383258 + 3 NA intron (NM_032167, intron 16 of 20) L1ME3G|LINE|L1 -337163 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 954-13 chr14 68350383 68350928 + 3 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 278132 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 488-49 chr11 47970295 47970471 + 3 NA Intergenic MER5B|DNA|hAT-Charlie -10176 NM_002843 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 239-205 chr2 221791548 221791657 + 3 NA Intergenic L1MA4A|LINE|L1 -217400 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 772-34 chr20 60289464 60289931 + 3 NA intron (NR_046099, intron 3 of 4) MSTA-int|LTR|ERVL-MaLR -18777 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 540-27 chr10 31623310 31623541 + 3 NA Intergenic Intergenic -223670 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 430-239 chr5 40555886 40556148 + 3 NA Intergenic Intergenic -123898 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 443-196 chr3 42300167 42300366 + 3 NA Intergenic Intergenic -34081 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 515-124 chr2 116419642 116419952 + 3 NA Intergenic Intergenic 1075982 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 335-243 chr2 58457924 58458074 + 3 NA Intergenic Intergenic -62754 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 474-35 chr10 59139219 59139417 + 3 NA Intergenic Intergenic 37146 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 463-285 chr8 86676339 86676674 + 3 NA intron (NM_019098, intron 3 of 17) L2c|LINE|L2 67169 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 595-85 chr2 98424738 98425053 + 3 NA Intergenic L1M4b|LINE|L1 -19692 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 267-408 chr8 10303688 10303837 + 3 NA intron (NM_001199729, intron 5 of 6) intron (NM_001199729, intron 5 of 6) -170803 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 351-131 chr14 66321365 66321527 + 3 NA Intergenic L1MA5|LINE|L1 -164925 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 340-35 chr1 238032353 238032541 + 3 NA Intergenic L1MA9|LINE|L1 -141525 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 545-188 chr5 86135595 86135898 + 3 NA Intergenic Intergenic -146698 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 271-45 chr10 50514143 50514268 + 3 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 109751 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 1089-18 chr8 125293276 125293935 + 3 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -136753 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 640-125 chr7 92952691 92953078 + 3 NA Intergenic L1MC4a|LINE|L1 -116257 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 825-33 chr3 130249275 130249782 + 3 NA intron (NR_027898, intron 17 of 22) L1M5|LINE|L1 36708 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 438-235 chr6 9134026 9134275 + 3 NA Intergenic L3|LINE|CR1 481941 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 501-181 chr4 3206223 3206493 + 3 NA intron (NM_002111, intron 42 of 66) intron (NM_002111, intron 42 of 66) -38011 NM_001330620 345222 Hs.442291 NM_001012982 ENSG00000188981 MSANTD1 C4orf44 Myb/SANT DNA binding domain containing 1 protein-coding 542-223 chr8 89044256 89044447 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 713360 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 1092-5 chr12 39201839 39202357 + 3 NA Intergenic Intergenic 241022 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 743-13 chr10 79969999 79970415 + 3 NA Intergenic L1M2|LINE|L1 -21102 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 525-119 chr2 77552848 77553136 + 3 NA Intergenic Intergenic -30559 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 1468-2 chr20 51289946 51290765 + 3 NA Intergenic L1ME4a|LINE|L1 162622 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 676-80 chr3 27233172 27233547 + 3 NA intron (NM_199347, intron 24 of 24) L1PB2|LINE|L1 -16836 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 441-263 chr8 84155674 84155859 + 3 NA Intergenic Intergenic -27021 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 653-79 chr21 22594940 22595256 + 3 NA Intergenic Intergenic -484186 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 463-44 chr10 82106812 82107048 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 125990 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 286-335 chr5 1561241 1561426 + 3 NA Intergenic Intergenic 33198 NR_003263 728609 Hs.379186 NR_003263 SDHAP3 SDHACL|SDHAL succinate dehydrogenase complex flavoprotein subunit A pseudogene 3 pseudo 1540-4 chr3 144399179 144399967 + 3 NA Intergenic L1MA2|LINE|L1 426492 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 783-20 chr12 133099693 133100146 + 3 NA intron (NM_001300777, intron 4 of 4) L1MC1|LINE|L1 19716 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 769-27 chr2 60079463 60079822 + 3 NA Intergenic L2c|LINE|L2 303394 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 638-60 chr18 12994497 12994926 + 3 NA intron (NM_032142, intron 1 of 44) intron (NM_032142, intron 1 of 44) 3349 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 438-241 chr6 73947339 73947508 + 3 NA Intergenic L1MA4A|LINE|L1 -122028 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 762-57 chr5 109249857 109250383 + 3 NA intron (NR_149040, intron 3 of 3) MER112|DNA|hAT-Charlie 76249 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 520-221 chr4 136928648 136928934 + 3 NA intron (NR_149105, intron 2 of 3) ERV3-16A3_I-int|LTR|ERVL -264965 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 579-182 chr9 82028010 82028341 + 3 NA Intergenic L2c|LINE|L2 39403 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 825-15 chr19 36398844 36399234 + 3 NA intron (NM_001321917, intron 4 of 4) L1MD|LINE|L1 19605 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 676-83 chr3 88932294 88932691 + 3 NA Intergenic Intergenic -175129 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 477-279 chr8 78863242 78863539 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 25861 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 752-16 chr12 97118091 97118562 + 3 NA Intergenic MIRc|SINE|MIR 210860 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 547-139 chr3 96269476 96269776 + 3 NA Intergenic Intergenic -90338 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 506-186 chr3 129744175 129744470 + 3 NA intron (NM_001349271, intron 2 of 4) AluJo|SINE|Alu -20209 NM_001349274 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 558-145 chr3 173114922 173115199 + 3 NA intron (NM_031955, intron 2 of 10) intron (NM_031955, intron 2 of 10) 26175 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 519-251 chr9 78494008 78494371 + 3 NA Intergenic L2c|LINE|L2 197064 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 564-59 chr15 35127640 35128019 + 3 NA Intergenic MamRep4096|DNA|hAT? -42421 NM_001355281 388112 Hs.635882 NM_001355281 ENSG00000255192 NANOGP8 NANOGP1|PN8 Nanog homeobox retrogene P8 protein-coding 386-104 chr14 66586643 66586875 + 3 NA intron (NM_001024218, intron 1 of 21) L1MA8|LINE|L1 79352 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 784-17 chr12 130241716 130242101 + 3 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 79449 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 921-30 chrX 73656486 73656920 + 3 NA intron (NM_001300884, intron 3 of 4) L1PA11|LINE|L1 93555 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 1213-8 chr2 35908434 35909073 + 3 NA Intergenic Intergenic 437348 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 460-228 chr4 136258485 136258777 + 3 NA Intergenic L1P4|LINE|L1 -344951 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 778-27 chr15 61124741 61125223 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 104320 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 531-273 chrX 87562593 87562948 + 3 NA intron (NM_057162, intron 1 of 10) L1M1|LINE|L1 44968 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 548-203 chr7 9386950 9387260 + 3 NA Intergenic L1PREC2|LINE|L1 -247165 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 629-9 chr1 147357634 147358014 + 3 NA Intergenic L1PA10|LINE|L1 114682 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 459-295 chr8 60952730 60952995 + 3 NA Intergenic Intergenic 14886 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 439-235 chr5 123977618 123977808 + 3 NA Intergenic Intergenic 432296 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 719-33 chr18 6643477 6643921 + 3 NA Intergenic Intergenic -86017 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 823-26 chr5 26384218 26384672 + 3 NA Intergenic Intergenic 654141 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 481-78 chr13 69767890 69768145 + 3 NA intron (NM_001286725, intron 6 of 9) intron (NM_001286725, intron 6 of 9) -339196 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 496-199 chr4 97450038 97450312 + 3 NA intron (NR_102713, intron 3 of 5) intron (NR_102713, intron 3 of 5) 83249 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 863-20 chr2 81299674 81300235 + 3 NA Intergenic Intergenic 166992 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 208-176 chr3 155298385 155298455 + 3 NA Intergenic L1M4|LINE|L1 -4737 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 813-31 chr5 4136548 4137012 + 3 NA Intergenic Intergenic 540948 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 598-87 chr3 72032062 72032378 + 3 NA Intergenic Intergenic 68235 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 595-88 chr2 128870650 128870856 + 3 NA Intergenic Intergenic 6153 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 1068-17 chr5 156855867 156856546 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger 5911 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 538-187 chr5 2282680 2283002 + 3 NA Intergenic Intergenic 29360 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 501-240 chr7 52550977 52551311 + 3 NA Intergenic Intergenic -484489 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 356-215 chr19 27953420 27953614 + 3 NA intron (NR_146733, intron 2 of 6) intron (NR_146733, intron 2 of 6) -159577 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 519-264 chrX 96476312 96476580 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -138544 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 413-20 chr1 173107671 173107900 + 3 NA Intergenic L1M4|LINE|L1 -56822 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 372-521 chr9 134560640 134560901 + 3 NA Intergenic L1ME3B|LINE|L1 -81035 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 556-133 chr20 60113547 60113878 + 3 NA Intergenic Intergenic -24780 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 456-126 chr17 9848906 9849129 + 3 NA intron (NM_004246, intron 4 of 12) intron (NM_004246, intron 4 of 12) 23093 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 329-596 chr8 133626696 133626872 + 3 NA Intergenic Intergenic -54897 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 141-9 chr10 42597770 42597833 + 3 NA intron (NM_006955, intron 4 of 4) MER45R|DNA|hAT-Tip100 40769 NR_130951 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 555-106 chr2 188924695 188925028 + 3 NA Intergenic L1M3b|LINE|L1 -49512 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 1447-5 chr4 136776999 136777752 + 3 NA Intergenic Intergenic -416381 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 372-67 chr11 15677575 15677742 + 3 NA intron (NM_001293172, intron 1 of 2) L1ME1|LINE|L1 33773 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 437-155 chr20 73121 73288 + 3 NA Intergenic L1MDa|LINE|L1 -14468 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 464-64 chr14 58494358 58494653 + 3 NA intron (NM_001329944, intron 26 of 31) L1MEh|LINE|L1 54824 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 446-125 chr18 2169019 2169241 + 3 NA Intergenic L2c|LINE|L2 402375 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 668-9 chr10 109339848 109340148 + 3 NA Intergenic Intergenic 583248 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 483-201 chr5 17699540 17699776 + 3 NA Intergenic Intergenic -44020 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 970-7 chr14 53985827 53986471 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -29258 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 422-185 chr3 72338488 72338778 + 3 NA Intergenic Intergenic 107990 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 585-145 chr6 154192048 154192387 + 3 NA intron (NM_015553, intron 10 of 11) L1M5|LINE|L1 102455 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 388-158 chr2 67154745 67154984 + 3 NA intron (NR_038844, intron 4 of 7) intron (NR_038844, intron 4 of 7) -58544 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 524-215 chr6 3637393 3637614 + 3 NA Intergenic Intergenic 114509 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 499-123 chr2 83127431 83127755 + 3 NA Intergenic L1MEc|LINE|L1 270790 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 316-471 chr5 180421081 180421294 + 3 NA Intergenic AluSx1|SINE|Alu -67851 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 525-224 chr6 74014078 74014407 + 3 NA Intergenic Intergenic -55209 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 1128-6 chr13 43196845 43197578 + 3 NA Intergenic Intergenic 84046 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 826-8 chr10 54431562 54432034 + 3 NA intron (NM_001142773, intron 2 of 31) L1MA2|LINE|L1 -54432 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 365-353 chr6 83519959 83520156 + 3 NA intron (NM_153362, intron 1 of 1) AluSc|SINE|Alu 7523 NM_001170423 167681 Hs.98381 NM_153362 ENSG00000146250 PRSS35 C6orf158|dJ223E3.1 serine protease 35 protein-coding 529-232 chr9 78637078 78637314 + 3 NA Intergenic Intergenic 340071 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 249-458 chr9 135598785 135598919 + 3 NA Intergenic HERV35I-int|LTR|ERV1 23927 NR_034016 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 373-247 chr22 23246192 23246392 + 3 NA intron (NM_004327, intron 1 of 22) AluJr|SINE|Alu -16475 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 421-218 chr4 91636562 91636748 + 3 NA Intergenic MIR|SINE|MIR 640647 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 468-162 chr2 153912180 153912407 + 3 NA intron (NM_052917, intron 2 of 12) L1PREC2|LINE|L1 -32101 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 814-12 chr11 130657273 130657606 + 3 NA Intergenic L1MEc|LINE|L1 -9296 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 615-125 chr7 12084136 12084513 + 3 NA Intergenic Intergenic -126970 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 638-132 chr6 46435533 46435913 + 3 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) 55600 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 586-149 chr8 43645108 43645526 + 3 NA Intergenic ALR/Alpha|Satellite|centr 352875 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 793-39 chr4 178586432 178586768 + 3 NA Intergenic L1MB8|LINE|L1 -678664 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 1253-3 chr16 76631882 76632549 + 3 NA Intergenic L1M3c|LINE|L1 -2783 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 430-199 chr3 127981763 127981939 + 3 NA intron (NM_001370224, intron 5 of 6) L1M5|LINE|L1 66619 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 1273-8 chr5 180259646 180260323 + 3 NA intron (NM_001364608, intron 6 of 12) intron (NM_001364608, intron 6 of 12) 20624 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 861-6 chr13 34500952 34501479 + 3 NA intron (NR_047036, intron 2 of 2) intron (NR_047036, intron 2 of 2) 139470 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 888-3 chr10 120093168 120093705 + 3 NA Intergenic L1MB2|LINE|L1 134923 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 872-12 chr11 128081135 128081531 + 3 NA Intergenic L1PA14|LINE|L1 -127433 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 617-137 chr8 123142539 123142847 + 3 NA intron (NM_001363149, intron 19 of 21) intron (NM_001363149, intron 19 of 21) -36354 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 548-3 chr1 66193005 66193208 + 3 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -139002 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 705-28 chr14 33226939 33227225 + 3 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 288203 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 391-294 chr5 122024421 122024579 + 3 NA intron (NM_152546, intron 7 of 7) MLT1J2|LTR|ERVL-MaLR 52674 NM_001317073 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 582-20 chr11 125855744 125856107 + 3 NA Intergenic L1M1|LINE|L1 22609 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 776 chr1 11508140 11508555 + 3 NA intron (NM_020780, intron 3 of 20) AluJr|SINE|Alu 29192 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 514-303 chrX 56046227 56046542 + 3 NA intron (NM_001324104, intron 2 of 6) L1PBa|LINE|L1 138099 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 345-110 chr12 14919488 14919644 + 3 NA intron (NM_152321, intron 4 of 6) intron (NM_152321, intron 4 of 6) 9559 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 1091 chr10 61831668 61832219 + 3 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat -69756 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 271-98 chr12 40543575 40543761 + 3 NA intron (NM_173600, intron 141 of 173) intron (NM_173600, intron 141 of 173) -148771 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 469-82 chr14 51904733 51904995 + 3 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 13707 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 576-21 chr10 121006746 121007035 + 3 NA Intergenic L1PA15-16|LINE|L1 155528 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 315-242 chr2 81282065 81282211 + 3 NA Intergenic Intergenic 184808 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 244-320 chr6 63649086 63649233 + 3 NA intron (NM_001370350, intron 2 of 14) AluJr|SINE|Alu 2633 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 630-60 chr2 137779869 137780190 + 3 NA Intergenic Intergenic 147903 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 481-207 chr3 135478478 135478795 + 3 NA Intergenic L1M3c|LINE|L1 -487092 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 455-225 chr5 86853896 86854210 + 3 NA Intergenic Intergenic 107235 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 445-8 chr1 109121528 109121764 + 3 NA intron (NM_001284352, intron 1 of 20) intron (NM_001284352, intron 1 of 20) 7531 NM_020775 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 1108-19 chr8 139552921 139553674 + 3 NA Intergenic Intergenic 149826 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 475-198 chr4 35323915 35324164 + 3 NA Intergenic Intergenic 919900 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 501-221 chr5 151212385 151212585 + 3 NA intron (NR_160730, intron 1 of 3) L3|LINE|CR1 351 NR_160730 105378230 NR_160730 LOC105378230 - uncharacterized LOC105378230 ncRNA 688-103 chr8 5236224 5236565 + 3 NA Intergenic Intergenic -241480 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 622-139 chr8 87901985 87902298 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -28126 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 522-56 chr11 115905137 115905318 + 3 NA Intergenic Intergenic -145027 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 420-128 chr2 28006432 28006681 + 3 NA intron (NM_199193, intron 5 of 13) Tigger15a|DNA|TcMar-Tigger 10189 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 466-256 chr7 123364638 123364888 + 3 NA Intergenic Intergenic -164792 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 583-65 chr16 68564551 68564939 + 3 NA non-coding (NR_130978, exon 5 of 5) non-coding (NR_130978, exon 5 of 5) 25454 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 421-37 chr11 32952299 32952552 + 3 NA intron (NM_001076786, intron 4 of 12) L1M5|LINE|L1 59614 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 609-67 chr20 43105449 43105710 + 3 NA intron (NM_133170, intron 1 of 31) AluSx|SINE|Alu 84327 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 545-200 chr6 39566591 39566893 + 3 NA intron (NM_001289020, intron 10 of 21) intron (NM_001289020, intron 10 of 21) -135352 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 759-59 chr5 142694192 142694616 + 3 NA intron (NM_001354954, intron 1 of 4) intron (NM_001354954, intron 1 of 4) 3617 NM_001354958 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 389-367 chr8 117144464 117144653 + 3 NA intron (NM_173851, intron 1 of 7) L1ME4a|LINE|L1 9563 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 322-560 chr9 24384435 24384646 + 3 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat 161136 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 764-12 chr10 111040354 111040876 + 3 NA Intergenic L1M1|LINE|L1 -36414 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 518-93 chr15 84024649 84024869 + 3 NA intron (NM_207517, intron 26 of 29) MIRb|SINE|MIR -55428 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 515-264 chr8 87381481 87381718 + 3 NA intron (NM_173538, intron 10 of 10) L1MB1|LINE|L1 492416 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 706-39 chr2 48747744 48748028 + 3 NA intron (NM_000233, intron 1 of 10) intron (NM_000233, intron 1 of 10) 7838 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 421-253 chr5 164204968 164205240 + 3 NA Intergenic Intergenic 262298 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 378-442 chr8 119848612 119848831 + 3 NA intron (NM_024094, intron 3 of 8) L1MB8|LINE|L1 7173 NM_024094 79075 Hs.315167 NM_024094 ENSG00000136982 DSCC1 DCC1 DNA replication and sister chromatid cohesion 1 protein-coding 277-147 chr17 41871777 41871938 + 3 NA intron (NM_198830, intron 23 of 27) intron (NM_198830, intron 23 of 27) -6434 NM_018143 55175 Hs.13268 NM_018143 ENSG00000178502 KLHL11 - kelch like family member 11 protein-coding 212-303 chr7 62626059 62626129 + 3 NA Intergenic ALR/Alpha|Satellite|centr 677962 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 440-271 chr9 93873264 93873533 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR 54041 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 857-45 chr5 136513376 136513746 + 3 NA Intergenic Intergenic -148085 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 601-36 chr13 93195615 93196053 + 3 NA Intergenic L1MEc|LINE|L1 -30973 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 545-248 chr8 130687546 130687783 + 3 NA Intergenic MIRc|SINE|MIR -243990 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 401-267 chr5 141159800 141160035 + 3 NA Intergenic AluSq|SINE|Alu 3918 NR_001280 54661 Hs.284307 NR_001280 ENSG00000255622 PCDHB17P ME4|PCDH-psi1|PCDHB17 protocadherin beta 17 pseudogene pseudo 730-72 chr7 41055717 41056114 + 3 NA Intergenic MamTip2|DNA|hAT-Tip100 -45689 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 340-521 chr8 26770600 26770754 + 3 NA intron (NM_033302, intron 1 of 2) intron (NM_033302, intron 1 of 2) 94978 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 435-246 chr8 101668983 101669205 + 3 NA 3' UTR (NM_001330593, exon 16 of 16) 3' UTR (NM_001330593, exon 16 of 16) 121875 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 357-323 chr5 4556676 4556817 + 3 NA Intergenic Intergenic -216735 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 240-261 chr20 45074809 45074950 + 3 NA intron (NM_001352385, intron 11 of 11) intron (NM_001352385, intron 11 of 11) 26248 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 512-177 chr3 162794018 162794304 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 509140 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 901-6 chr10 57026736 57027136 + 3 NA Intergenic Intergenic 277623 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 608-120 chr5 15246478 15246785 + 3 NA intron (NR_109944, intron 1 of 2) L2a|LINE|L2 19929 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 847-15 chr13 94245648 94246234 + 3 NA intron (NM_005708, intron 4 of 8) L1MA9|LINE|L1 -57950 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 489-15 chr1 185878703 185878889 + 3 NA intron (NM_031935, intron 4 of 106) L2a|LINE|L2 144405 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 668-102 chr8 36298642 36299028 + 3 NA Intergenic Intergenic -485539 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 508-88 chr19 12145883 12146182 + 3 NA exon (NM_145233, exon 4 of 4) exon (NM_145233, exon 4 of 4) -5682 NM_001203250 7568 Hs.512823 NM_021143 ENSG00000132010 ZNF20 KOX13 zinc finger protein 20 protein-coding 322-119 chr12 21138609 21138825 + 3 NA intron (NM_006446, intron 1 of 14) intron (NM_006446, intron 1 of 14) 7523 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 456-34 chr10 72973622 72973824 + 3 NA Intergenic AluJr|SINE|Alu -18917 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 340-240 chr2 27354987 27355172 + 3 NA intron (NM_001521, intron 1 of 19) L1ME3G|LINE|L1 1413 NM_001318909 2976 Hs.75782 NM_001521 ENSG00000115207 GTF3C2 TFIIIC-BETA|TFIIIC110 general transcription factor IIIC subunit 2 protein-coding 617-28 chr13 29029827 29030048 + 3 NA intron (NM_001033602, intron 1 of 13) MSTB1|LTR|ERVL-MaLR 5480 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 588-83 chr20 17473595 17473964 + 3 NA intron (NM_002594, intron 11 of 11) intron (NM_002594, intron 11 of 11) 57600 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 608-25 chr11 91529625 91529941 + 3 NA Intergenic L1M1|LINE|L1 -660581 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 359-459 chr7 145482517 145482720 + 3 NA Intergenic MER51-int|LTR|ERV1 -646565 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 645-19 chr12 28916220 28916620 + 3 NA Intergenic L1PA16|LINE|L1 -232858 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 429-313 chr8 130478379 130478547 + 3 NA Intergenic MER113|DNA|hAT-Charlie -34789 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 175-108 chr4 15810030 15810134 + 3 NA intron (NR_132660, intron 1 of 6) intron (NR_132660, intron 1 of 6) 31754 NM_001775 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 360-255 chr2 214911910 214912184 + 3 NA intron (NR_110292, intron 2 of 3) L4_C_Mam|LINE|RTE-X 65100 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 384-140 chr16 81874244 81874397 + 3 NA intron (NM_002661, intron 7 of 32) intron (NM_002661, intron 7 of 32) 95029 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 439-23 chr10 22603170 22603320 + 3 NA intron (NM_005028, intron 3 of 9) intron (NM_005028, intron 3 of 9) 110863 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 526-15 chr10 6957624 6957971 + 3 NA Intergenic Intergenic 178199 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 674-104 chr8 131558675 131558911 + 3 NA Intergenic L1MA3|LINE|L1 -345300 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 522-175 chr3 73177832 73178087 + 3 NA Intergenic LTR82B|LTR|ERVL 116300 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 827-2 chr1 102055281 102055576 + 3 NA Intergenic L1PBb|LINE|L1 -58194 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 894-4 chr10 17020912 17021357 + 3 NA intron (NM_001081, intron 27 of 66) L1ME4c|LINE|L1 108683 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 346-541 chrX 82322772 82322927 + 3 NA Intergenic L1M1|LINE|L1 1120747 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 289-155 chr15 87040702 87040833 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -52341 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 561-81 chr17 73532641 73532958 + 3 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 19116 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 330-94 chr11 60493821 60494000 + 3 NA intron (NM_017716, intron 1 of 6) intron (NM_017716, intron 1 of 6) 1132 NM_001164470 54860 Hs.272789 NM_017716 ENSG00000071203 MS4A12 Ms4a10 membrane spanning 4-domains A12 protein-coding 629-10 chr1 152249329 152249675 + 3 NA Intergenic Intergenic -25306 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 291-12 chr1 95323900 95324008 + 3 NA Intergenic MIR|SINE|MIR -5691 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 465-196 chr4 29743525 29743704 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 529322 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 352-468 chr6 129557961 129558157 + 3 NA Intergenic Intergenic 152118 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 492-112 chr18 3003135 3003533 + 3 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 8613 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 301-174 chr18 7198161 7198379 + 3 NA Intergenic Intergenic -32834 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 904-29 chr3 118013233 118013597 + 3 NA Intergenic Intergenic -322490 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 565-183 chr8 98670464 98670685 + 3 NA intron (NM_001256313, intron 4 of 8) LTR27B|LTR|ERV1 155097 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 510-288 chr8 139503216 139503499 + 3 NA Intergenic Intergenic 199766 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 443-301 chr8 135846141 135846449 + 3 NA Intergenic Intergenic 388839 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 724-28 chr19 30625504 30625871 + 3 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 253303 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 449-228 chr5 174884835 174885090 + 3 NA Intergenic L1MA9|LINE|L1 110769 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 799-40 chr3 122190382 122190920 + 3 NA intron (NM_001178065, intron 1 of 6) L2b|LINE|L2 6324 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 399-148 chr2 80104763 80104931 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 199905 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 510-213 chr4 152469993 152470255 + 3 NA intron (NM_001349798, intron 2 of 13) intron (NM_001349798, intron 2 of 13) 19292 NR_036092 100422896 NR_036092 ENSG00000264678 MIR3140 mir-3140 microRNA 3140 ncRNA 1054 chr12 37859596 37860305 + 3 NA Intergenic ALR/Alpha|Satellite|centr -456824 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 258-409 chr8 122277677 122277812 + 3 NA Intergenic L1PA10|LINE|L1 290900 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 470-220 chr5 118249707 118249956 + 3 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -32743 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 431-323 chr9 111971375 111971558 + 3 NA Intergenic Intergenic 39366 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 618-73 chr20 50518121 50518414 + 3 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 7884 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 358-474 chr8 82096495 82096653 + 3 NA Intergenic Intergenic -254288 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 764-59 chr6 62650208 62650652 + 3 NA Intergenic MER61-int|LTR|ERV1 -364203 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 473-286 chr8 134605824 134606069 + 3 NA intron (NM_020863, intron 5 of 15) L2c|LINE|L2 7875 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 422-285 chr7 68844205 68844412 + 3 NA Intergenic Intergenic 753316 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 399-98 chr15 38779993 38780154 + 3 NA Intergenic Intergenic 83475 NR_160786 668-16 chr12 17286534 17286844 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 297942 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 638-135 chr6 62014463 62014835 + 3 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 271576 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 796-5 chr1 203896146 203896523 + 3 NA Intergenic L1MEc|LINE|L1 34487 NM_001328638 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 663-21 chr11 102570489 102571002 + 3 NA Intergenic Intergenic -39998 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 318-140 chr12 45217165 45217352 + 3 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) 1163 NM_001025356 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 404-263 chr5 119495523 119495723 + 3 NA intron (NM_001199291, intron 12 of 24) intron (NM_001199291, intron 12 of 24) 43126 NM_001292028 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 290-190 chr19 31836727 31836842 + 3 NA Intergenic Intergenic -189078 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 249-54 chr10 65498074 65498275 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -73251 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 485-267 chr7 50638779 50639041 + 3 NA intron (NM_001350816, intron 6 of 17) L1PB4|LINE|L1 66391 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 670-110 chr7 38034184 38034533 + 3 NA Intergenic Intergenic 113039 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 261-274 chr4 41589804 41589948 + 3 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) -22833 NM_001330674 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 289-83 chr11 69237681 69237849 + 3 NA Intergenic L1MEc|LINE|L1 -56390 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 293-392 chr7 20438221 20438459 + 3 NA Intergenic Intergenic -106578 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 464-156 chr3 1911048 1911374 + 3 NA Intergenic Intergenic -187592 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 689-26 chr13 39776628 39776991 + 3 NA intron (NM_001145079, intron 18 of 18) intron (NM_001145079, intron 18 of 18) -112674 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 478-233 chr5 33155657 33156045 + 3 NA Intergenic L1PA16|LINE|L1 -73884 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 732-95 chr8 124392899 124393238 + 3 NA Intergenic L1PB3|LINE|L1 -20369 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 516-200 chr5 5253286 5253537 + 3 NA intron (NM_139056, intron 17 of 22) MER4A|LTR|ERV1 113081 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 882-3 chr1 101225783 101226147 + 3 NA Intergenic Intergenic 10563 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 518-133 chr2 76894501 76894712 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -91359 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 462-65 chr12 111115768 111115973 + 3 NA intron (NM_001370598, intron 1 of 21) L2b|LINE|L2 15866 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 328-281 chr2 142442012 142442161 + 3 NA Intergenic Intergenic -310385 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 393-153 chr2 3078823 3079062 + 3 NA intron (NR_110228, intron 3 of 6) intron (NR_110228, intron 3 of 6) 47084 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 637-115 chr8 84053560 84053944 + 3 NA Intergenic MER44A|DNA|TcMar-Tigger -129035 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 324-104 chr11 115598702 115598840 + 3 NA Intergenic MIRb|SINE|MIR -94356 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 660-77 chr5 11093390 11093760 + 3 NA intron (NM_001364128, intron 12 of 19) intron (NM_001364128, intron 12 of 19) -332341 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 465-94 chr16 27171674 27171928 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -31725 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 569-145 chr5 61581512 61581752 + 3 NA Intergenic AluJr|SINE|Alu -56128 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 484-281 chr9 538902 539141 + 3 NA intron (NM_001354331, intron 1 of 10) AluSz|SINE|Alu 34466 NM_001354333 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 235-147 chr18 48046880 48047064 + 3 NA intron (NM_001371286, intron 3 of 4) intron (NM_001371286, intron 3 of 4) 90176 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 267-4 chr1 41403683 41403862 + 3 NA Intergenic L2a|LINE|L2 -28103 NR_135817 101929901 NR_135817 ENSG00000229901 LOC101929901 - uncharacterized LOC101929901 ncRNA 475-175 chr3 27969308 27969606 + 3 NA Intergenic L2a|LINE|L2 -135321 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 315-310 chr3 79241193 79241351 + 3 NA intron (NM_002941, intron 2 of 30) MARNA|DNA|TcMar-Mariner -170455 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 488-186 chr4 37324931 37325186 + 3 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 80315 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 615-92 chr4 31398476 31398864 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -107874 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 1007-15 chr5 171606770 171607463 + 3 NA Intergenic L1MC4|LINE|L1 -178756 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 572-101 chr20 13099327 13099561 + 3 NA intron (NM_001349945, intron 7 of 12) MLT1D|LTR|ERVL-MaLR 90472 NM_001349945 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 507-29 chr10 43031113 43031445 + 3 NA Intergenic Intergenic 33716 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 576-47 chr14 62713563 62713860 + 3 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 331747 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 507-278 chr9 108303457 108303764 + 3 NA Intergenic Intergenic 552376 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 607-30 chr12 24498438 24498818 + 3 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 63863 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 426-62 chr12 44688908 44689123 + 3 NA intron (NM_006159, intron 13 of 20) intron (NM_006159, intron 13 of 20) 186646 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 470-105 chr18 77815323 77815510 + 3 NA Intergenic L1MD|LINE|L1 178311 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 693-3 chr1 73313024 73313278 + 3 NA intron (NR_110676, intron 3 of 3) L1MEg|LINE|L1 6981 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 348-469 chr6 130736427 130736620 + 3 NA Intergenic Intergenic -90882 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 436-263 chr6 40521328 40521523 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 65939 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 369-44 chr10 79627401 79627546 + 3 NA Intergenic Intergenic 16534 NM_001164645 653509 Hs.535295 NM_005411 ENSG00000122852 SFTPA1 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 surfactant protein A1 protein-coding 327-439 chr6 65431474 65431608 + 3 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 130123 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 475-225 chr5 56371229 56371503 + 3 NA Intergenic L1MB2|LINE|L1 110403 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 848-25 chr20 9666177 9666574 + 3 NA intron (NM_020341, intron 3 of 10) intron (NM_020341, intron 3 of 10) -151377 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 880-32 chr5 40058558 40059138 + 3 NA Intergenic Intergenic 6557 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 1033-14 chr8 125962673 125963457 + 3 NA Intergenic L2|LINE|L2 -11868 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 618-90 chr4 46393907 46394330 + 3 NA Intergenic Intergenic -3990 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 454-124 chr18 11495708 11495901 + 3 NA intron (NR_110778, intron 1 of 2) ERV3-16A3_I-int|LTR|ERVL 5756 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 477-26 chr1 220854560 220854862 + 3 NA intron (NR_046901, intron 1 of 2) L2c|LINE|L2 -24732 NM_021958 3142 Hs.74870 NM_021958 ENSG00000136630 HLX HB24|HLX1 H2.0 like homeobox protein-coding 739-23 chr16 8502609 8503124 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 86972 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 742-7 chr1 175467488 175468026 + 3 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -274770 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 571-13 chr10 55554253 55554474 + 3 NA intron (NM_001354404, intron 2 of 34) L1MC3|LINE|L1 -44679 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 485-39 chr10 126758889 126759114 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -88491 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 663-73 chr4 21972265 21972721 + 3 NA Intergenic Intergenic -23742 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 687-110 chr7 77516662 77517163 + 3 NA Intergenic Intergenic -20383 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 520-336 chrX 96284022 96284357 + 3 NA Intergenic L1MA9|LINE|L1 53713 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 512-36 chr10 52943262 52943515 + 3 NA Intergenic Intergenic -171688 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 582-137 chr6 128753166 128753522 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -129794 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 732-52 chr20 19907995 19908631 + 3 NA intron (NM_001242581, intron 2 of 11) AluY|SINE|Alu 18747 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 880-3 chr11 13515044 13515469 + 3 NA Intergenic Intergenic -19081 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 605-21 chr12 29182659 29182927 + 3 NA intron (NM_001271783, intron 1 of 11) intron (NM_001271783, intron 1 of 11) 33515 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 308-475 chr7 101450632 101450747 + 3 NA intron (NM_133457, intron 3 of 12) intron (NM_133457, intron 3 of 12) 87814 NM_001278563 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 431-157 chr2 229108922 229109209 + 3 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 123027 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 370-266 chr20 8167491 8167697 + 3 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 35328 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 658-123 chr8 87636892 87637269 + 3 NA Intergenic HAL1|LINE|L1 236935 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 449-181 chr4 10335604 10335881 + 3 NA Intergenic Intergenic 121684 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 380-268 chr4 6162946 6163202 + 3 NA intron (NM_144720, intron 1 of 12) intron (NM_144720, intron 1 of 12) 31545 NM_001306133 152789 Hs.479066 NM_144720 ENSG00000152969 JAKMIP1 Gababrbp|JAMIP1|MARLIN1 janus kinase and microtubule interacting protein 1 protein-coding 391-367 chr8 130934700 130934961 + 3 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 106079 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 542-114 chr20 7592398 7592679 + 3 NA Intergenic AluSg|SINE|Alu 220930 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 886-5 chr10 43489148 43489514 + 3 NA Intergenic Intergenic 52220 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 600-114 chr7 30830797 30831129 + 3 NA intron (NR_037598, intron 8 of 19) intron (NR_037598, intron 8 of 19) 59546 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 550-87 chr17 59041691 59041933 + 3 NA intron (NR_148346, intron 17 of 23) intron (NR_148346, intron 17 of 23) 65068 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 550-211 chr7 34883991 34884254 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR -49791 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 500-296 chr8 88675228 88675469 + 3 NA Intergenic LTR2B|LTR|ERV1 -347865 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 542-88 chr19 48433417 48433598 + 3 NA intron (NM_000836, intron 10 of 12) intron (NM_000836, intron 10 of 12) -12476 NM_031485 83743 Hs.400625 NM_031485 ENSG00000105447 GRWD1 CDW4|GRWD|RRB1|WDR28 glutamate rich WD repeat containing 1 protein-coding 215-117 chr17 71326220 71326326 + 3 NA Intergenic L1MB3|LINE|L1 -124094 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 471-111 chr18 22778009 22778196 + 3 NA intron (NR_110782, intron 1 of 1) LTR78|LTR|ERV1 8735 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 512-85 chr15 33400912 33401089 + 3 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 90033 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 842-53 chr8 72383117 72383674 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -131761 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 1018-19 chr2 134689753 134690358 + 3 NA intron (NM_030923, intron 2 of 7) AluSz6|SINE|Alu 28945 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 593-74 chr2 107053899 107054294 + 3 NA Intergenic Intergenic -166987 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 239-344 chr6 28344012 28344121 + 3 NA intron (NM_001135215, intron 3 of 7) ERV3-16A3_I-int|LTR|ERVL -5881 NM_001242895 80317 Hs.380930 NM_024493 ENSG00000189298 ZKSCAN3 ZF47|ZFP306|ZNF306|ZNF309|ZSCAN13|ZSCAN35|Zfp47|dJ874C20.1|dJ874C20.1.|zfp-47 zinc finger with KRAB and SCAN domains 3 protein-coding 405-11 chr1 163954989 163955178 + 3 NA Intergenic L1M1|LINE|L1 -531892 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 256-463 chrX 95323062 95323155 + 3 NA Intergenic L1PA15-16|LINE|L1 -259882 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 667-39 chr17 69884517 69884979 + 3 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -76959 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 431-239 chr5 170094102 170094417 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -11638 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 758-73 chr8 76141843 76142183 + 3 NA Intergenic Intergenic -264641 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 551-92 chr2 98972901 98973166 + 3 NA Intergenic L1MA4|LINE|L1 -36808 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 285-30 chr10 25232931 25233132 + 3 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -56755 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 434-232 chr5 125583255 125583468 + 3 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 90100 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 471-77 chr13 108643593 108643837 + 3 NA intron (NM_001198950, intron 1 of 34) L1ME1|LINE|L1 14104 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 496-188 chr3 191709729 191710012 + 3 NA Intergenic L1MA4A|LINE|L1 248707 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 468-126 chr18 78167113 78167385 + 3 NA Intergenic Intergenic -173522 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 577-173 chr6 124502387 124502833 + 3 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 219605 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 937-3 chr11 29029856 29030444 + 3 NA Intergenic MER124|DNA?|DNA? -552602 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 423-157 chr20 55731356 55731696 + 3 NA Intergenic Intergenic 273993 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 877-39 chrX 14547686 14548038 + 3 NA intron (NM_001118886, intron 2 of 8) L2b|LINE|L2 18326 NM_001118886 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 504-4 chr1 82243395 82243682 + 3 NA Intergenic Intergenic 441085 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 528-179 chr4 89971971 89972189 + 3 NA Intergenic Intergenic 77226 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 868-40 chr7 92932830 92933360 + 3 NA Intergenic Intergenic -96468 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 657-30 chr15 27327091 27327417 + 3 NA intron (NM_001270873, intron 4 of 5) intron (NM_001270873, intron 4 of 5) -165935 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 281-215 chr2 104017897 104018075 + 3 NA Intergenic Intergenic 390346 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 664-27 chr12 2073948 2074319 + 3 NA intron (NM_199460, intron 1 of 49).2 intron (NM_199460, intron 1 of 49).2 20848 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 408-153 chr2 35428444 35428644 + 3 NA Intergenic Intergenic -42861 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 319-412 chr5 64058522 64058687 + 3 NA Intergenic Intergenic -96312 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 1287-2 chr16 22983437 22984281 + 3 NA Intergenic L1MEd|LINE|L1 165411 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 549-188 chr7 24920101 24920413 + 3 NA intron (NM_015550, intron 1 of 22) L1MB7|LINE|L1 -27636 NR_104112 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 279-56 chr10 111550162 111550294 + 3 NA Intergenic L2c|LINE|L2 435937 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 449-297 chrX 3951267 3951455 + 3 NA Intergenic AluSx1|SINE|Alu -30619 NR_146579 729162 Hs.657302 NR_146578 FAM239B - zinc finger protein 839 pseudogene pseudo 487-210 chr4 64811733 64812002 + 3 NA Intergenic Intergenic 192633 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 472-163 chr2 110897830 110898118 + 3 NA intron (NM_001371254, intron 10 of 18) L1MDa|LINE|L1 165401 NM_001371254 515-81 chr16 56176574 56176925 + 3 NA intron (NR_027078, intron 2 of 4) L1MB7|LINE|L1 14345 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 1277-3 chr2 216232584 216233328 + 3 NA Intergenic L1M2|LINE|L1 16067 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 1059-7 chr14 53422790 53423413 + 3 NA Intergenic MER34C_|LTR|ERV1 269747 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 532-177 chr3 187236728 187237025 + 3 NA intron (NR_033519, intron 9 of 9) intron (NR_033519, intron 9 of 9) -29247 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 429-124 chr17 79754895 79755126 + 3 NA Intergenic AluJb|SINE|Alu -23138 NM_005189 84733 Hs.368410 NM_005189 ENSG00000173894 CBX2 CDCA6|M33|SRXY5 chromobox 2 protein-coding 493 chr1 12749490 12749816 + 3 NA intron (NM_001330361, intron 1 of 2) L1MB3|LINE|L1 3453 NM_001330361 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 413-244 chr5 105641011 105641180 + 3 NA Intergenic MLT2C1|LTR|ERVL 541621 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 240-328 chr4 97804536 97804623 + 3 NA intron (NM_174952, intron 9 of 10) Tigger3b|DNA|TcMar-Tigger 338897 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 751-61 chr5 85496521 85496971 + 3 NA Intergenic L1PB2|LINE|L1 -785698 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 472-258 chr5 125894650 125894919 + 3 NA Intergenic MER65C|LTR|ERV1 -284793 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 545-145 chr3 109805857 109806067 + 3 NA Intergenic Intergenic 203134 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 287-419 chr8 125123950 125124065 + 3 NA intron (NM_001349486, intron 3 of 7) L1MB8|LINE|L1 32147 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 657-97 chr8 69590975 69591373 + 3 NA intron (NR_156414, intron 7 of 20) intron (NR_156414, intron 7 of 20) -1726 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 528-52 chr11 71409897 71410114 + 3 NA intron (NR_038862, intron 2 of 2) L1M2|LINE|L1 13349 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 751-70 chr6 67155519 67155902 + 3 NA Intergenic Intergenic -899641 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 597-52 chr15 91277533 91277832 + 3 NA intron (NM_001323036, intron 8 of 11) L1ME1|LINE|L1 175886 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 475-113 chr18 13524469 13524708 + 3 NA intron (NM_181482, intron 4 of 5) MLT1H|LTR|ERVL-MaLR 64641 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 1402-6 chr3 44734570 44735257 + 3 NA exon (NM_001258280, exon 3 of 3) exon (NM_001258280, exon 3 of 3) 5278 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 349-27 chr1 114073095 114073329 + 3 NA Intergenic Intergenic 79228 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 829-29 chr4 58922189 58922566 + 3 NA Intergenic Intergenic -61905 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 454-236 chr4 82574143 82574340 + 3 NA Intergenic L1MB5|LINE|L1 -11988 NM_001353454 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 658-108 chr6 71739473 71739786 + 3 NA Intergenic L1ME3G|LINE|L1 -147074 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 656-42 chr16 52825833 52826294 + 3 NA Intergenic L2a|LINE|L2 -219088 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 421-121 chr19 37404464 37404684 + 3 NA Intergenic Intergenic 33475 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 360-288 chr3 3660078 3660221 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -139282 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 507-110 chr19 31419577 31419820 + 3 NA Intergenic Intergenic -70262 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 237-323 chr6 47025785 47025923 + 3 NA exon (NM_025048, exon 4 of 8) exon (NM_025048, exon 4 of 8) 16478 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 531-6 chr1 110657382 110657582 + 3 NA non-coding (NR_109846, exon 3 of 3) non-coding (NR_109846, exon 3 of 3) 14293 NR_109846 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 603-162 chr8 55261553 55261927 + 3 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 159712 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 723-6 chr1 115203318 115203742 + 3 NA Intergenic L1MEf|LINE|L1 -79504 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 444-287 chrX 56301335 56301564 + 3 NA Intergenic L1MC4|LINE|L1 68291 NR_136704 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 309-25 chr1 200946415 200946586 + 3 NA intron (NR_147176, intron 4 of 15) L1MEd|LINE|L1 17556 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 473-113 chr18 30230471 30230801 + 3 NA Intergenic Intergenic -68274 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 400-192 chr20 44508822 44509009 + 3 NA intron (NM_006811, intron 5 of 9) intron (NM_006811, intron 5 of 9) 13155 NM_006811 10955 Hs.272168 NM_006811 ENSG00000132824 SERINC3 AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1 serine incorporator 3 protein-coding 694-100 chr5 17440858 17441119 + 3 NA intron (NR_134273, intron 1 of 1) L1MEg2|LINE|L1 -3022 NR_134270 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 916-12 chr16 6507535 6508003 + 3 NA intron (NM_018723, intron 2 of 15) L1MB2|LINE|L1 -266040 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 538-34 chr10 130828041 130828287 + 3 NA Intergenic L1MC3|LINE|L1 134504 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 449-101 chr18 10948112 10948364 + 3 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) -188589 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 372-34 chr1 230040976 230041151 + 3 NA Intergenic L1MEc|LINE|L1 -16726 NM_001291866 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 505-58 chr12 25028665 25028966 + 3 NA intron (NM_001321724, intron 10 of 17) intron (NM_001321724, intron 10 of 17) -23413 NM_001366542 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 511-68 chr14 81971643 81971955 + 3 NA Intergenic Intergenic -228661 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 495-150 chr3 22437094 22437287 + 3 NA Intergenic MIR|SINE|MIR 480051 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 347-502 chr8 67598144 67598318 + 3 NA intron (NM_020361, intron 2 of 10) L1MEg|LINE|L1 148129 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 618-49 chr18 60126898 60127129 + 3 NA Intergenic Intergenic 227017 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 400-228 chr3 139052869 139053081 + 3 NA Intergenic L1M2|LINE|L1 -8083 NM_001134657 389152 Hs.531377 NM_001004315 ENSG00000233701 PRR23C - proline rich 23C protein-coding 482-20 chr1 174454868 174455145 + 3 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 7042 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 621-72 chr22 45279097 45279364 + 3 NA Intergenic Intergenic -5719 NM_001167574 7380 Hs.632787 NM_006953 ENSG00000100373 UPK3A UP3A|UPIII|UPIIIA|UPK3 uroplakin 3A protein-coding 460-306 chr9 111088323 111088489 + 3 NA Intergenic L1MEf|LINE|L1 -49408 NM_001351397 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 447-131 chr2 125902390 125902668 + 3 NA Intergenic L1MEc|LINE|L1 215456 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 481-28 chr10 55004717 55005012 + 3 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -203573 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 649-118 chr9 28524068 28524313 + 3 NA intron (NM_152570, intron 2 of 6) L1MB8|LINE|L1 195115 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 959-34 chr8 52207817 52208526 + 3 NA intron (NM_001352863, intron 9 of 27) intron (NM_001352863, intron 9 of 27) 13809 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 523-277 chr8 129538924 129539345 + 3 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 35884 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 251-251 chr3 140931436 140931588 + 3 NA Intergenic Intergenic -10324 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 438-18 chr1 181842570 181842756 + 3 NA Intergenic L1MEg|LINE|L1 219049 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 691-50 chr3 32102888 32103334 + 3 NA Intergenic AluSz6|SINE|Alu -3400 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 508-34 chr10 115998256 115998452 + 3 NA Intergenic Intergenic 196435 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 705-38 chr16 23011488 23011914 + 3 NA Intergenic Intergenic 137569 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 213-268 chr7 89362645 89362728 + 3 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat -566949 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 745-38 chr3 102361289 102361607 + 3 NA Intergenic Intergenic -73567 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 383-21 chr1 180555017 180555181 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -3875 NR_125716 148756 NR_125716 ENSG00000236719 OVAAL LINC01131|OVAL ovarian adenocarcinoma amplified long non-coding RNA ncRNA 458-18 chr10 34464273 34464577 + 3 NA intron (NM_001184789, intron 4 of 22) intron (NM_001184789, intron 4 of 22) 350871 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 474-295 chr8 125376415 125376673 + 3 NA Intergenic L1MA9|LINE|L1 -53814 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 541-80 chr16 64354230 64354479 + 3 NA Intergenic Intergenic 767709 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 559-62 chr16 25909603 25909958 + 3 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -115457 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 475-185 chr3 90277184 90277354 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1169648 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 666-122 chr9 102916491 102916896 + 3 NA Intergenic Intergenic -78640 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 720-54 chr20 51050996 51051326 + 3 NA Intergenic L2c|LINE|L2 -28054 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 639-36 chr14 43309264 43309607 + 3 NA Intergenic Intergenic 1197848 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 537-164 chr4 19999712 19999962 + 3 NA Intergenic (GA)n|Simple_repeat|Simple_repeat -252068 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 829-28 chr3 178666584 178667175 + 3 NA intron (NM_001278911, intron 1 of 4) MER2|DNA|TcMar-Tigger 108029 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 306-221 chr2 13066306 13066491 + 3 NA Intergenic Intergenic -59385 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 479-80 chr17 19510240 19510472 + 3 NA Intergenic AluSq|SINE|Alu -23498 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 198-186 chr4 131585991 131586133 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -178776 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 467-100 chr16 76102505 76102693 + 3 NA Intergenic L1MB8|LINE|L1 -174802 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 163-108 chr6 65002050 65002104 + 3 NA intron (NM_001292009, intron 13 of 43) intron (NM_001292009, intron 13 of 43) -299341 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 425-208 chr4 75289340 75289546 + 3 NA Intergenic Intergenic -64633 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 821-23 chr2 66168019 66168627 + 3 NA Intergenic L2a|LINE|L2 190005 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 343-176 chr16 35468254 35468500 + 3 NA Intergenic Intergenic 12219 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 377-358 chr7 7435059 7435250 + 3 NA intron (NM_001037763, intron 23 of 34) intron (NM_001037763, intron 23 of 34) 100719 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 228-294 chr6 72173766 72173913 + 3 NA intron (NM_014989, intron 4 of 33) intron (NM_014989, intron 4 of 33) -39054 NM_001350429 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 469-208 chr5 6814430 6814610 + 3 NA intron (NR_146281, intron 1 of 1) intron (NR_146281, intron 1 of 1) 13401 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 422-37 chr10 111665427 111665586 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 518259 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 675-9 chr10 23608526 23608942 + 3 NA Intergenic MIRb|SINE|MIR -85993 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 567-22 chr10 31504492 31504930 + 3 NA intron (NM_001323638, intron 8 of 12) L1MA4A|LINE|L1 -104956 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 596-16 chr1 227583744 227584108 + 3 NA intron (NR_102302, intron 2 of 5) MER77|LTR|ERVL 20370 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 390-161 chr19 27962157 27962346 + 3 NA intron (NR_146734, intron 3 of 7) intron (NR_146734, intron 3 of 7) -168311 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 461-113 chr18 70574117 70574385 + 3 NA Intergenic Intergenic 76703 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 406-301 chr8 119265829 119265996 + 3 NA Intergenic Intergenic -19055 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 380-272 chr4 32596646 32596813 + 3 NA Intergenic Intergenic 245691 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 537-86 chr17 52874305 52874538 + 3 NA intron (NR_146899, intron 1 of 2) intron (NR_146899, intron 1 of 2) 12300 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 754-11 chr11 81457899 81458456 + 3 NA Intergenic L2a|LINE|L2 432659 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 562-104 chr2 65907393 65907619 + 3 NA Intergenic L1ME3B|LINE|L1 450822 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 938-3 chr11 70704300 70704779 + 3 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -42698 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 895-10 chr14 87039754 87040100 + 3 NA Intergenic L1PB2|LINE|L1 134149 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 463-92 chr14 54795722 54795955 + 3 NA Intergenic Intergenic 41005 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 436-322 chr8 138077471 138077675 + 3 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 5972 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 447-192 chr4 43276202 43276407 + 3 NA Intergenic Intergenic 216239 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 366-132 chr14 84807266 84807435 + 3 NA Intergenic (ATTT)n|Simple_repeat|Simple_repeat -464582 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 448-196 chr5 2880080 2880326 + 3 NA Intergenic L1ME3|LINE|L1 -37651 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 755-68 chr8 9466595 9467118 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -89056 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 270-89 chr12 79767384 79767493 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -76341 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 534-46 chr11 54897436 54897719 + 3 NA Intergenic ALR/Alpha|Satellite|centr 190745 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 715-68 chr5 45247919 45248196 + 3 NA Intergenic L2|LINE|L2 439110 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 446-262 chr6 26629821 26630085 + 3 NA Intergenic L1MD1|LINE|L1 29793 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 328-226 chr18 59979558 59979773 + 3 NA Intergenic Intergenic 79669 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 530-8 chr1 80573777 80574128 + 3 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 38197 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 584-73 chr2 76557393 76557663 + 3 NA Intergenic Intergenic -428437 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 643-37 chr14_GL000225v1_random 83530 83888 + 3 NA NA BSR/Beta|Satellite|Satellite NA NA 656-24 chr10 116531965 116532324 + 3 NA Intergenic Charlie25|DNA|hAT-Charlie -13787 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 552-136 chr3 44001936 44002165 + 3 NA Intergenic Intergenic -112162 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 407-110 chr17 55626797 55627007 + 3 NA Intergenic Intergenic 95962 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 532-76 chr15 55130859 55131079 + 3 NA Intergenic L1MA9|LINE|L1 65972 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 550-145 chr3 41960205 41960632 + 3 NA intron (NR_136342, intron 1 of 34) AluSz6|SINE|Alu 1685 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 913-26 chr3 68181915 68182392 + 3 NA intron (NM_001252216, intron 2 of 4) AluJb|SINE|Alu 177906 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 770-27 chr16 79146463 79146963 + 3 NA intron (NM_001291997, intron 7 of 7) L2c|LINE|L2 454024 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 831-21 chr2 54777806 54778154 + 3 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 52968 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 564-112 chr20 41367327 41367615 + 3 NA promoter-TSS (NM_052846) promoter-TSS (NM_052846) -653 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 401-349 chr9 96723499 96723753 + 3 NA Intergenic Intergenic -2195 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 382-189 chr2 51919084 51919252 + 3 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -451480 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 805-17 chr17 73521364 73521697 + 3 NA intron (NM_001144952, intron 1 of 44) (CTGC)n|Simple_repeat|Simple_repeat 7847 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 709-29 chr17 77762474 77762760 + 3 NA Intergenic MER45A|DNA|hAT-Tip100 -34058 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 378-110 chr12 127597544 127597734 + 3 NA Intergenic Intergenic 38828 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 451-119 chr2 158336748 158337009 + 3 NA intron (NM_138803, intron 7 of 13) L2c|LINE|L2 119875 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 447-117 chr2 20855515 20855689 + 3 NA Intergenic FLAM_A|SINE|Alu -32472 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 532-92 chr17 51873246 51873500 + 3 NA intron (NM_001082533, intron 4 of 9) MIRb|SINE|MIR 285341 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 595-12 chr1 191406777 191407002 + 3 NA Intergenic L2|LINE|L2 -178391 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 373-37 chr1 239190914 239191170 + 3 NA Intergenic MIRb|SINE|MIR -195526 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 430-317 chr8 117748090 117748398 + 3 NA Intergenic MIRb|SINE|MIR 172669 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 408-234 chr4 60480161 60480411 + 3 NA Intergenic Intergenic -442333 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 623-116 chr6 143991456 143991801 + 3 NA intron (NM_001289040, intron 1 of 5) MER115|DNA|hAT-Tip100 16631 NM_001317161 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 816-5 chr12 23762423 23762784 + 3 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) -178017 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 516-264 chr9 17989456 17989764 + 3 NA Intergenic L1ME4a|LINE|L1 410544 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 415-156 chr20 31422735 31423036 + 3 NA intron (NR_045677, intron 2 of 2) L1MC5|LINE|L1 6295 NR_045677 245935 Hs.526624 NR_002577 ENSG00000204547 DEFB122 DEFB-22|DEFB122P|DEFB22 defensin beta 122 (pseudogene) pseudo 420-13 chr1 96373249 96373521 + 3 NA intron (NR_110693, intron 1 of 5) HAL1|LINE|L1 740 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 162-73 chr20 53038744 53038840 + 3 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 66434 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 331-192 chr16 62439044 62439193 + 3 NA Intergenic L1MA5A|LINE|L1 -402680 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 850-53 chr9 39588596 39589090 + 3 NA Intergenic Intergenic -124317 NR_003528 401509 Hs.449445 NM_001032297 ZNF658B - zinc finger protein 658B (pseudogene) pseudo 530-232 chr7 48396405 48396767 + 3 NA intron (NM_152701, intron 38 of 61) intron (NM_152701, intron 38 of 61) 225128 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 658-36 chr13 81896519 81896793 + 3 NA Intergenic L1PA13|LINE|L1 -669673 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 310-9 chr1 96731574 96731745 + 3 NA intron (NM_001300990, intron 2 of 12) intron (NM_001300990, intron 2 of 12) 9021 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 424-276 chr8 89079314 89079504 + 3 NA Intergenic Intergenic 678302 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 737-51 chr22 27351674 27352023 + 3 NA Intergenic Intergenic 41197 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 578-4 chr1 49682725 49683118 + 3 NA intron (NR_136623, intron 2 of 12) L2b|LINE|L2 -210836 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 381-21 chr1 188081606 188081765 + 3 NA Intergenic Intergenic 638057 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 879-27 chr7 62870660 62871237 + 3 NA Intergenic ALR/Alpha|Satellite|centr 433108 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 422-41 chr11 40125973 40126251 + 3 NA intron (NR_047674, intron 1 of 1) intron (NR_047674, intron 1 of 1) 167018 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 1170 chr12 22399328 22399861 + 3 NA Intergenic MER34B-int|LTR|ERV1 -64880 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 530-230 chr7 37478723 37478997 + 3 NA Intergenic L1MB8|LINE|L1 -29534 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 535-254 chr8 141815776 141816055 + 3 NA Intergenic L2b|LINE|L2 -29602 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 765-59 chr5 114820209 114820749 + 3 NA Intergenic L1ME1|LINE|L1 -47066 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 284-228 chr20 11874656 11874769 + 3 NA Intergenic Intergenic -3997 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 330-139 chr13 56004719 56004976 + 3 NA Intergenic L1MC3|LINE|L1 830393 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 319-386 chr4 96875992 96876181 + 3 NA Intergenic Intergenic -490840 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 490-117 chr18 43604305 43604553 + 3 NA Intergenic L1PA13|LINE|L1 -326939 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 536-96 chr17 71149102 71149296 + 3 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 52980 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 594-51 chr16 50217957 50218299 + 3 NA intron (NM_001365324, intron 5 of 11) intron (NM_001365324, intron 5 of 11) -48423 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 395-159 chr2 26600509 26600737 + 3 NA intron (NM_001029881, intron 3 of 6) MamGypLTR3a|LTR|Gypsy 38036 NM_001322426 339778 Hs.407083 NM_001105519 ENSG00000173557 C2orf70 - chromosome 2 open reading frame 70 protein-coding 415-245 chr6 158332260 158332438 + 3 NA intron (NM_020245, intron 1 of 13) LTR41B|LTR|ERVL 9367 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 475-86 chr15 27441076 27441338 + 3 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -279888 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 489-254 chr8 73162081 73162269 + 3 NA Intergenic Intergenic -69003 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 797-27 chr2 105436257 105436809 + 3 NA intron (NM_201557, intron 1 of 5) intron (NM_201557, intron 1 of 5) 1980 NM_001318897 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 395-234 chr3 126669893 126670061 + 3 NA intron (NR_034158, intron 4 of 4) L1M5|LINE|L1 7896 NR_034158 255330 Hs.145435 NM_174935 ENSG00000198284 NUP210P1 C3orf46 nucleoporin 210 pseudogene 1 pseudo 721-34 chr2 34674413 34674791 + 3 NA Intergenic L1MA3|LINE|L1 -2955 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 538-47 chr12 4101874 4102249 + 3 NA Intergenic L1MC2|LINE|L1 -171701 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 710-15 chr10 109882635 109883018 + 3 NA intron (NM_020383, intron 9 of 20) L2c|LINE|L2 40420 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 522-193 chr4 87749254 87749611 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger -50122 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 876-38 chr8 126356758 126357261 + 3 NA Intergenic MIR|SINE|MIR 31514 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 423-60 chr12 61105557 61105792 + 3 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat 1087165 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 322-505 chr7 104552517 104552710 + 3 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 223957 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 562-160 chr4 58573158 58573431 + 3 NA Intergenic Intergenic -36966 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 467-309 chrX 142995360 142995655 + 3 NA Intergenic L2a|LINE|L2 -30421 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 416-282 chr5 141169868 141170102 + 3 NA Intergenic HAL1|LINE|L1 -2659 NM_018940 56129 Hs.203830 NM_018940 ENSG00000113212 PCDHB7 PCDH-BETA7 protocadherin beta 7 protein-coding 912-33 chr3 193910762 193911242 + 3 NA Intergenic Intergenic -66993 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 671-82 chr5 179004002 179004327 + 3 NA Intergenic L1M4|LINE|L1 -8844 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 839-14 chr14 98613666 98614027 + 3 NA Intergenic L1MB3|LINE|L1 -97767 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 421-8 chr1 75868095 75868372 + 3 NA intron (NM_002440, intron 9 of 19) L1MC4|LINE|L1 64171 NR_026546 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 490-176 chr3 3351373 3351559 + 3 NA Intergenic Intergenic -171749 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 238-387 chr8 98671413 98671540 + 3 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 154195 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 487-67 chr12 70021791 70022034 + 3 NA Intergenic L1M1|LINE|L1 196685 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 915-19 chr3 178695220 178695750 + 3 NA intron (NM_001278911, intron 1 of 4) THE1C-int|LTR|ERVL-MaLR 136635 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 1187-3 chr13 83211534 83212343 + 3 NA Intergenic L1PREC2|LINE|L1 670455 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 632-91 chr5 11012882 11013137 + 3 NA intron (NM_001288715, intron 17 of 20) MER39|LTR|ERV1 -251775 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 1056-17 chr6 150297510 150298156 + 3 NA Intergenic Intergenic -71179 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 611-113 chr5 19273101 19273393 + 3 NA Intergenic Intergenic 613025 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 282-65 chr11 28991566 28991725 + 3 NA Intergenic Intergenic -514097 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 260-235 chr2 239019954 239020079 + 3 NA Intergenic Intergenic 48898 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 621-73 chr3 1544649 1545159 + 3 NA Intergenic MIR3|SINE|MIR 451880 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 966-26 chr7 68762452 68763010 + 3 NA Intergenic Intergenic 742478 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 1666-2 chr18 13852788 13853612 + 3 NA Intergenic L1MCc|LINE|L1 29051 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 620-45 chr16 17884338 17884870 + 3 NA Intergenic L1MC5|LINE|L1 -413644 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 278-181 chr18 70368606 70368789 + 3 NA Intergenic Intergenic 15894 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 417-143 chr2 96387227 96387415 + 3 NA Intergenic L1M4a1|LINE|L1 51555 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 634-108 chr4 183481 183840 + 3 NA intron (NR_110527, intron 3 of 4) L1PA11|LINE|L1 -28940 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 537-18 chr1 216410885 216411188 + 3 NA intron (NM_206933, intron 3 of 71) L2c|LINE|L2 12360 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 618-101 chr5 124384428 124384789 + 3 NA intron (NR_125774, intron 4 of 5) L1MB3|LINE|L1 53912 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 458-94 chr16 36066358 36066624 + 3 NA Intergenic ALR/Alpha|Satellite|centr 319939 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 183-9 chr10 7796461 7796545 + 3 NA intron (NM_001001973, intron 2 of 9) intron (NM_001001973, intron 2 of 9) 8326 NM_001001973 509 Hs.271135 NM_005174 ENSG00000165629 ATP5F1C ATP5C|ATP5C1|ATP5CL1 ATP synthase F1 subunit gamma protein-coding 483-127 chr2 143903854 143904129 + 3 NA Intergenic Intergenic -33076 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 551-174 chr5 167279010 167279201 + 3 NA intron (NM_001122679, intron 1 of 29) L1MD1|LINE|L1 -110704 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 727-82 chr8 69880188 69880576 + 3 NA Intergenic MLT2B3|LTR|ERVL -45404 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 366-240 chr2 208686856 208687114 + 3 NA intron (NR_136588, intron 3 of 5) Charlie1a|DNA|hAT-Charlie 144343 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 241-195 chr2 127394552 127394650 + 3 NA Intergenic Intergenic -23819 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 634-63 chr16 30124509 30124896 + 3 NA Intergenic Intergenic -1393 NM_001109891 5595 Hs.861 NM_002746 ENSG00000102882 MAPK3 ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK mitogen-activated protein kinase 3 protein-coding 486-34 chr10 74812909 74813222 + 3 NA Intergenic AluSz|SINE|Alu -12190 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 429-239 chr5 87520565 87520793 + 3 NA Intergenic L1MB5|LINE|L1 -107646 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 408-105 chr14 67179740 67180019 + 3 NA intron (NM_001024218, intron 21 of 21) intron (NM_001024218, intron 21 of 21) -9561 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 445-45 chr12 12958888 12959180 + 3 NA intron (NR_149067, intron 1 of 2) L1PA14|LINE|L1 -8650 NM_018654 55507 Hs.644599 NM_018654 ENSG00000111291 GPRC5D - G protein-coupled receptor class C group 5 member D protein-coding 448-254 chr7 37695885 37696130 + 3 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 12241 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 684-59 chr2 135725501 135725850 + 3 NA TTS (NM_015361) TTS (NM_015361) -16180 NM_014607 23190 Hs.591242 NM_014607 ENSG00000144224 UBXN4 UBXD2|UBXDC1|erasin UBX domain protein 4 protein-coding 575-57 chr15 26431697 26431913 + 3 NA Intergenic L1MD2|LINE|L1 197285 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 752-12 chr11 116014821 116015286 + 3 NA Intergenic L1MA9|LINE|L1 -254853 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 891-29 chr5 46239589 46240102 + 3 NA Intergenic ALR/Alpha|Satellite|centr -543465 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 682-39 chr16 82538630 82539015 + 3 NA Intergenic Intergenic -88147 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 656-81 chr3 154569812 154570252 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -139842 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 385-63 chr12 22795310 22795516 + 3 NA Intergenic Intergenic 170242 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 473-110 chr17 70227141 70227425 + 3 NA Intergenic Intergenic 57748 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 431-128 chr2 48870331 48870625 + 3 NA Intergenic Intergenic -114754 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 305-199 chr17 60841063 60841217 + 3 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 163289 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 658-58 chr18 72049008 72049363 + 3 NA Intergenic L1M3|LINE|L1 -266959 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 544-66 chr14 77677229 77677421 + 3 NA intron (NM_006020, intron 4 of 5) AluSx1|SINE|Alu 30698 NM_006020 8846 Hs.94542 NM_006020 ENSG00000100601 ALKBH1 ABH|ABH1|ALKBH|alkB|hABH alkB homolog 1, histone H2A dioxygenase protein-coding 1098-4 chr22 34264416 34265037 + 3 NA Intergenic Intergenic -341838 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 624-62 chr2 76084725 76085149 + 3 NA Intergenic Intergenic -374022 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 746-58 chr4 174974951 174975223 + 3 NA intron (NM_001278126, intron 5 of 5) L1MC5|LINE|L1 56729 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 677-46 chr2 118297276 118297702 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -111103 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 483-155 chr22 44477648 44477895 + 3 NA Intergenic L1MEg|LINE|L1 20462 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 745-62 chr6 49181453 49181770 + 3 NA Intergenic Intergenic 281642 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 816-25 chr2 148091100 148091733 + 3 NA intron (NM_018328, intron 2 of 14) L1PB1|LINE|L1 -69812 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 283-272 chr21 28358762 28358936 + 3 NA Intergenic Intergenic -130182 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 459-335 chrX 98061722 98061880 + 3 NA Intergenic L1M4a1|LINE|L1 -497266 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 466-71 chr13 60373590 60373766 + 3 NA Intergenic Intergenic -22779 NM_030794 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 408-188 chr20 53462843 53463013 + 3 NA intron (NM_173485, intron 2 of 2) MIRb|SINE|MIR -89842 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 481-131 chr2 6646769 6647084 + 3 NA Intergenic Intergenic -3447 NR_106986 102466235 NR_106986 ENSG00000283394 MIR7515 hsa-mir-7515 microRNA 7515 ncRNA 530-78 chr14 78423875 78424173 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 20305 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 165-89 chr4 35439767 35439822 + 3 NA Intergenic Intergenic 804145 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 653-20 chr11 10081347 10081636 + 3 NA intron (NM_030962, intron 2 of 39) AluSc8|SINE|Alu 212716 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 496-63 chr13 25646745 25646928 + 3 NA intron (NM_016529, intron 24 of 36) L1ME3F|LINE|L1 178062 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 521-185 chr4 166542778 166542994 + 3 NA Intergenic L1PB2|LINE|L1 669649 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 440-16 chr1 238166892 238167085 + 3 NA Intergenic Intergenic -276066 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 503-94 chr14 50696353 50696596 + 3 NA Intergenic L1MC|LINE|L1 -28168 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 297-145 chr15 25143173 25143361 + 3 NA intron (NR_146177, intron 61 of 147) MER110-int|LTR|ERV1 7625 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 670-65 chr2 123504772 123505104 + 3 NA Intergenic Intergenic -431457 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 800-2 chr1 64026679 64027220 + 3 NA intron (NM_005012, intron 2 of 8) intron (NM_005012, intron 2 of 8) 85256 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 422-290 chr8 4499665 4499901 + 3 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 495131 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 469-266 chr7 61954703 61954946 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1349232 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 333-279 chr2 184300143 184300328 + 3 NA Intergenic Intergenic -78740 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 421-141 chr2 95220571 95220804 + 3 NA Intergenic Intergenic -53762 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 560-8 chr1 200713853 200714058 + 3 NA Intergenic L1ME3A|LINE|L1 -25617 NM_001297707 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 480-50 chr11 131322687 131322914 + 3 NA Intergenic Intergenic -47815 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 547-131 chr22 28385256 28385560 + 3 NA intron (NM_001145418, intron 2 of 22) MIRb|SINE|MIR -74461 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 536-226 chr8 40444470 40444759 + 3 NA Intergenic Intergenic -101251 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 600-116 chr7 48378991 48379418 + 3 NA intron (NM_152701, intron 35 of 61) intron (NM_152701, intron 35 of 61) 207746 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 267-235 chr20 61370682 61370875 + 3 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 118517 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 566-126 chr3 87567404 87567753 + 3 NA Intergenic Intergenic -225128 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 268-284 chr4 80817721 80817891 + 3 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -212902 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 491-220 chr5 150949423 150949594 + 3 NA Intergenic L1P4|LINE|L1 -2924 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 721-77 chr7 28254281 28254707 + 3 NA Intergenic L1ME1|LINE|L1 -44827 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 403-261 chr5 143407908 143408105 + 3 NA intron (NM_001018075, intron 1 of 8) Tigger13a|DNA|TcMar-Tigger -2651 NM_001364180 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 780-44 chr4 72170099 72170544 + 3 NA Intergenic L1PA17|LINE|L1 131189 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 421-197 chr3 162031501 162031751 + 3 NA Intergenic Intergenic 534818 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 981-21 chr4 61416649 61417163 + 3 NA intron (NM_001371343, intron 2 of 23) MER1A|DNA|hAT-Charlie 214734 NM_001371342 608-13 chr10 76275157 76275504 + 3 NA intron (NM_001305581, intron 5 of 6) HAL1b|LINE|L1 492569 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 615-146 chr9 31259549 31259937 + 3 NA Intergenic Intergenic 121747 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 469-249 chr6 138884523 138884753 + 3 NA intron (NM_001077706, intron 16 of 21) AluSx1|SINE|Alu 88527 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 606-155 chr8 34213981 34214292 + 3 NA Intergenic Intergenic -569785 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 445-236 chr6 88190039 88190238 + 3 NA Intergenic L1MC1|LINE|L1 -22789 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 638-107 chr4 94315350 94315653 + 3 NA intron (NM_014485, intron 3 of 5) intron (NM_014485, intron 3 of 5) 27335 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 516-254 chr8 117288947 117289136 + 3 NA Intergenic Intergenic 154046 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 1524 chr10 52666464 52667313 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 88516 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 745-48 chr4 92718897 92719345 + 3 NA intron (NM_001286838, intron 2 of 14) AluSx1|SINE|Alu 414722 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 405-346 chr9 91553524 91553786 + 3 NA Intergenic L1MC2|LINE|L1 -82596 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 490-166 chr20 55914574 55914771 + 3 NA Intergenic Intergenic 90847 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 729-18 chr12 34511230 34511509 + 3 NA Intergenic ALR/Alpha|Satellite|centr 488873 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 413-104 chr16 35339415 35339652 + 3 NA Intergenic HSAT6|Satellite|Satellite -23883 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 382-424 chr8 129340942 129341168 + 3 NA Intergenic Intergenic -99815 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 775-77 chr6 113253861 113254458 + 3 NA Intergenic L1PA13|LINE|L1 179288 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 486-212 chr3 145024556 145024855 + 3 NA Intergenic Intergenic 1044480 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 502-222 chr5 68400794 68401093 + 3 NA Intergenic Intergenic 108366 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 595-146 chr6 148984265 148984650 + 3 NA intron (NM_005715, intron 5 of 7) intron (NM_005715, intron 5 of 7) -19773 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 655-80 chr3 46765711 46766180 + 3 NA Intergenic L1M4|LINE|L1 -9090 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 630-76 chr20 61856059 61856512 + 3 NA intron (NM_001252339, intron 5 of 14) intron (NM_001252339, intron 5 of 14) 97377 NR_031658 100302168 NR_031658 ENSG00000284193 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 584-5 chr1 50225140 50225501 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 115487 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 709-74 chr5 31622282 31622754 + 3 NA Intergenic Tigger18a|DNA|TcMar-Tigger -16613 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 551-56 chr14 83326472 83326676 + 3 NA Intergenic Intergenic 683942 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 439-229 chr5 33704927 33705148 + 3 NA intron (NM_001324512, intron 3 of 21) L1MA10|LINE|L1 186953 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 727-48 chr2 227185418 227185722 + 3 NA intron (NM_000091, intron 1 of 51) intron (NM_000091, intron 1 of 51) 21005 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 527-242 chr7 29995293 29995626 + 3 NA Intergenic L1MEc|LINE|L1 -5170 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 632-45 chr19 24357520 24357936 + 3 NA Intergenic ALR/Alpha|Satellite|centr -194281 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 292-308 chr4 34037324 34037487 + 3 NA intron (NR_125902, intron 1 of 4) intron (NR_125902, intron 1 of 4) 2488 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 503-169 chr20 20103155 20103382 + 3 NA intron (NM_015585, intron 8 of 26) intron (NM_015585, intron 8 of 26) 46622 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 538-19 chr1 194517742 194518075 + 3 NA Intergenic Intergenic 1213163 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 398-39 chr10 58119170 58119385 + 3 NA Intergenic Intergenic 148617 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 794-3 chr1 64216752 64217217 + 3 NA intron (NR_158768, intron 6 of 9) MER94|DNA|hAT-Blackjack 13361 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 503-54 chr11 58407977 58408270 + 3 NA Intergenic AluSx1|SINE|Alu -4714 NM_001005469 441608 Hs.553826 NM_001005469 ENSG00000172769 OR5B3 OR11-239|OR5B13|OST129 olfactory receptor family 5 subfamily B member 3 protein-coding 514-307 chrX 93189630 93189839 + 3 NA Intergenic L1M5|LINE|L1 -364831 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 715-8 chr11 54886612 54887132 + 3 NA Intergenic ALR/Alpha|Satellite|centr 180040 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 556-121 chr2 228934652 228934982 + 3 NA Intergenic L1MA10|LINE|L1 297275 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 1007-18 chr8 134769865 134770323 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 30513 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 546-114 chr2 143688420 143688608 + 3 NA intron (NM_018460, intron 12 of 13) intron (NM_018460, intron 12 of 13) -248553 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 518-86 chr14 88954340 88954666 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 129852 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 463-223 chr5 12063153 12063343 + 3 NA Intergenic L1ME1|LINE|L1 -158802 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 881-35 chr6 54994267 54994636 + 3 NA Intergenic L1PA15-16|LINE|L1 -112009 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 547-258 chr9 10030835 10031137 + 3 NA intron (NM_002839, intron 4 of 45) intron (NM_002839, intron 4 of 45) 231594 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 644-49 chr20 20099881 20100275 + 3 NA intron (NM_015585, intron 8 of 26) intron (NM_015585, intron 8 of 26) 43432 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 610-96 chr20 20145529 20145771 + 3 NA intron (NM_015585, intron 9 of 26) L1ME1|LINE|L1 89004 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 563-95 chr2 171598781 171599044 + 3 NA Intergenic L1MC5|LINE|L1 76438 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 452-214 chr5 84698340 84698508 + 3 NA Intergenic L1M1|LINE|L1 -313544 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 489-251 chr8 51772724 51772955 + 3 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 36606 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 349-492 chr8 35455007 35455151 + 3 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -89313 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 525-280 chr9 72853748 72854154 + 3 NA Intergenic Intergenic 20158 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 650-70 chr21 26583141 26583541 + 3 NA Intergenic L1MC4a|LINE|L1 -10055 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 471-87 chr14 80072334 80072634 + 3 NA Intergenic MLT2B3|LTR|ERVL -138935 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 519-260 chr9 122987645 122987908 + 3 NA intron (NM_012197, intron 4 of 25) L1ME4c|LINE|L1 -45867 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 618-19 chr11 1500376 1500602 + 3 NA Intergenic L2b|LINE|L2 -13710 NM_001172223 81532 Hs.370360 NM_053005 ENSG00000182208 MOB2 HCCA2 MOB kinase activator 2 protein-coding 430-264 chr6 80193158 80193358 + 3 NA intron (NR_134945, intron 7 of 10) intron (NR_134945, intron 7 of 10) 86587 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 346-366 chr4 132579445 132579629 + 3 NA Intergenic Intergenic -11552 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 571-44 chr14 40733063 40733403 + 3 NA Intergenic Intergenic -221478 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 359-124 chr12 105782288 105782467 + 3 NA Intergenic L1MC5a|LINE|L1 75603 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 622-135 chr7 122162442 122162792 + 3 NA Intergenic Intergenic -18368 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 503-292 chr8 130749577 130749766 + 3 NA Intergenic L2a|LINE|L2 291238 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 418-307 chr9 106519509 106519668 + 3 NA Intergenic MLT2C1|LTR|ERVL -81340 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 432-304 chrX 45464232 45464488 + 3 NA Intergenic L1MEc|LINE|L1 -41028 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 547-217 chr7 37375364 37375675 + 3 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) -21851 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 422-78 chr14 61127052 61127243 + 3 NA Intergenic UCON49|LINE|L2 -145457 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 526-69 chr13 85848201 85848456 + 3 NA Intergenic Intergenic -48909 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 202-11 chr1 173095479 173095556 + 3 NA Intergenic Intergenic -44554 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 427-34 chr10 119625573 119625856 + 3 NA Intergenic Intergenic -25656 NM_004281 9531 Hs.523309 NM_004281 ENSG00000151929 BAG3 BAG-3|BIS|CAIR-1|MFM6 BCL2 associated athanogene 3 protein-coding 639-96 chr5 66491403 66491749 + 3 NA Intergenic MER3|DNA|hAT-Charlie 20028 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 836-10 chr10 36077948 36078285 + 3 NA Intergenic L1PA11|LINE|L1 299814 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 476-235 chr5 170823290 170823541 + 3 NA Intergenic Intergenic -38603 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 259-31 chr1 237691008 237691135 + 3 NA intron (NM_001035, intron 63 of 104) AluYi6|SINE|Alu -171104 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 473-262 chr7 66747283 66747569 + 3 NA intron (NM_001367749, intron 1 of 4) intron (NM_001367749, intron 1 of 4) 6693 NM_014504 27342 Hs.530053 NM_014504 ENSG00000154710 RABGEF1 RABEX5|RAP1|rabex-5 RAB guanine nucleotide exchange factor 1 protein-coding 326-30 chr1 162323534 162323686 + 3 NA intron (NM_014697, intron 4 of 9) MIR|SINE|MIR -18936 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 560-33 chr12 28357141 28357427 + 3 NA intron (NM_001352084, intron 6 of 11) intron (NM_001352084, intron 6 of 11) -166546 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 499-5 chr1 73107028 73107322 + 3 NA Intergenic L1PA17|LINE|L1 -198995 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 498-76 chr14 22181312 22181623 + 3 NA Intergenic Intergenic 251286 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 436-135 chr2 98327755 98327975 + 3 NA Intergenic LTR55|LTR|ERVL? -18290 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 713-71 chr6 15702289 15702679 + 3 NA Intergenic L1M4|LINE|L1 -39426 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 347-112 chr13 76404937 76405131 + 3 NA Intergenic Intergenic -469902 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 1170-2 chr12 118916031 118916589 + 3 NA Intergenic L2b|LINE|L2 -65231 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 462-94 chr15 96206582 96206777 + 3 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -78838 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 362-134 chr13 74425190 74425415 + 3 NA intron (NR_047005, intron 2 of 4) intron (NR_047005, intron 2 of 4) 6129 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 314-281 chr2 61351478 61351608 + 3 NA intron (NM_014709, intron 10 of 79) intron (NM_014709, intron 10 of 79) 65834 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 532-215 chr5 162562053 162562261 + 3 NA Intergenic Intergenic 494515 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 614-40 chr17 34872408 34872817 + 3 NA Intergenic L1MB7|LINE|L1 88848 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 355-394 chr5 31181834 31182096 + 3 NA Intergenic Intergenic -11721 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 514-142 chr2 66138191 66138415 + 3 NA Intergenic MIR|SINE|MIR 220025 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 472-136 chr18 71470085 71470304 + 3 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 108762 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 534-240 chr7 86169781 86170029 + 3 NA Intergenic L2a|LINE|L2 -474004 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 988-32 chr5 174247127 174247771 + 3 NA Intergenic Intergenic -88905 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 932-34 chr8 117263978 117264523 + 3 NA Intergenic Intergenic 129255 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 524-264 chr8 111924519 111924882 + 3 NA Intergenic Intergenic 548061 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 460-224 chr4 86303173 86303375 + 3 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 51370 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 340-447 chr5 58973441 58973657 + 3 NA 3' UTR (NM_001197219, exon 15 of 15) 3' UTR (NM_001197219, exon 15 of 15) 26349 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 763-9 chr11 80027123 80027502 + 3 NA Intergenic L1MA4|LINE|L1 -586282 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 459-146 chr2 116417462 116417709 + 3 NA Intergenic L1PA13|LINE|L1 1073770 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 769 chr1 38621494 38622017 + 3 NA Intergenic Intergenic 146559 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 272-33 chr1 247160891 247161054 + 3 NA intron (NM_003431, intron 1 of 3) L1M5|LINE|L1 11045 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 550-32 chr10 62693275 62693627 + 3 NA Intergenic MIRb|SINE|MIR -111269 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 439-136 chr2 82345852 82346197 + 3 NA Intergenic LTR40a|LTR|ERVL -510779 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 361-36 chr10 23275673 23275926 + 3 NA intron (NM_001365862, intron 8 of 15) L1MEd|LINE|L1 -68158 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 608-97 chr3 72249418 72249763 + 3 NA Intergenic L1PREC2|LINE|L1 98333 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 476-162 chr20 55584479 55584745 + 3 NA Intergenic Intergenic -157415 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 314-614 chr9 99775557 99775756 + 3 NA intron (NR_109802, intron 2 of 6) intron (NR_109802, intron 2 of 6) 44233 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 730-27 chr2 35588175 35588626 + 3 NA Intergenic MER66-int|LTR|ERV1 116995 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 422-204 chr4 13783150 13783338 + 3 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 128065 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 455-188 chr4 87889386 87889574 + 3 NA Intergenic MER11B|LTR|ERVK 54777 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 353-49 chr10 21440078 21440281 + 3 NA Intergenic Intergenic 56462 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 423-91 chr16 6620738 6621001 + 3 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -152940 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 635-100 chr7 47063378 47063656 + 3 NA Intergenic L1MEd|LINE|L1 -366395 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 474-197 chr4 30771671 30771992 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 51462 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 776-58 chr8 105179456 105179977 + 3 NA Intergenic Intergenic -138722 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 841-8 chr12 43124308 43124639 + 3 NA Intergenic L2a|LINE|L2 -30842 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 724-70 chr5 45013406 45013934 + 3 NA Intergenic L1M3|LINE|L1 204723 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 512-16 chr1 188190508 188190772 + 3 NA Intergenic L1MEg|LINE|L1 747012 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 359-430 chr6 105143026 105143160 + 3 NA intron (NR_037157, intron 1 of 3) L1MA9|LINE|L1 5406 NR_037157 154442 Hs.586271 NR_037157 ENSG00000203808 BVES-AS1 C6orf112|bA99L11.2 BVES antisense RNA 1 ncRNA 644-107 chr8 119786631 119786972 + 3 NA intron (NM_003184, intron 14 of 25) AluSx1|SINE|Alu 46040 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 680-120 chr8 139521616 139522142 + 3 NA Intergenic LTR8A|LTR|ERV1 181244 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 663-26 chr12 29423537 29423895 + 3 NA intron (NR_073172, intron 1 of 1) L3|LINE|CR1 34422 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 458-141 chr2 153963340 153963632 + 3 NA intron (NM_052917, intron 3 of 12) L1ME1|LINE|L1 19092 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 842-24 chr2 161935735 161936115 + 3 NA intron (NM_001354443, intron 15 of 25) L1MA8|LINE|L1 138290 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 791-59 chr5 119875228 119875828 + 3 NA Intergenic Intergenic 245969 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 648-33 chr13 47371410 47371831 + 3 NA Intergenic L1MA4|LINE|L1 -474544 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 1324-4 chr3 134564243 134564996 + 3 NA non-coding (NR_148352, exon 13 of 13) non-coding (NR_148352, exon 13 of 13) 78446 NM_001353111 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 610-55 chr15 45086556 45086975 + 3 NA Intergenic L1ME4a|LINE|L1 27396 NM_014080 50506 Hs.71377 NM_014080 ENSG00000140279 DUOX2 LNOX2|NOXEF2|P138-TOX|TDH6|THOX2 dual oxidase 2 protein-coding 422-201 chr3 191132665 191132843 + 3 NA Intergenic Intergenic -66487 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 323-148 chr14 68179058 68179204 + 3 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 355539 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 637-7 chr1 115429031 115429485 + 3 NA Intergenic Intergenic -91022 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 433-136 chr2 116790457 116790676 + 3 NA Intergenic Intergenic -1024125 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 565-50 chr15 65066113 65066453 + 3 NA intron (NM_016563, intron 1 of 4) A-rich|Low_complexity|Low_complexity 1708 NM_016563 51285 Hs.27018 NM_016563 ENSG00000103710 RASL12 RIS RAS like family 12 protein-coding 693-60 chr2 129252928 129253284 + 3 NA intron (NR_122042, intron 1 of 3) intron (NR_122042, intron 1 of 3) 20785 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 890-41 chr8 117492943 117493513 + 3 NA Intergenic L1PA14|LINE|L1 -27485 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 411-308 chr9 75506580 75506742 + 3 NA Intergenic L1MB2|LINE|L1 -383983 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 571-96 chr21 18181073 18181446 + 3 NA intron (NM_001204178, intron 2 of 5) L1MB8|LINE|L1 -63574 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 412-111 chr16 78381156 78381359 + 3 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 281603 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 441-106 chr19 9523359 9523548 + 3 NA 3' UTR (NM_024106, exon 8 of 8) 3' UTR (NM_024106, exon 8 of 8) 15192 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 632-106 chr7 50230656 50230995 + 3 NA Intergenic Intergenic -73239 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 894-25 chr3 44696008 44696583 + 3 NA Intergenic L1PB1|LINE|L1 -10642 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 692-104 chr8 130932547 130932979 + 3 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 108146 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 467-186 chr3 119249226 119249420 + 3 NA intron (NR_046574, intron 3 of 3) L1PB2|LINE|L1 -8445 NM_003778 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 406-209 chr4 83431358 83431547 + 3 NA intron (NM_001297757, intron 10 of 16) FLAM_C|SINE|Alu 24371 NM_133636 113510 Hs.480101 NM_133636 ENSG00000163312 HELQ HEL308 helicase, POLQ like protein-coding 221-271 chr6 150101297 150101448 + 3 NA Intergenic Intergenic -32251 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 1439-5 chr5 36018282 36019172 + 3 NA Intergenic L1MC4|LINE|L1 -17705 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 895-24 chr20 41830100 41830544 + 3 NA Intergenic Intergenic -211945 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 457-25 chr10 25046757 25046972 + 3 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 15415 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 313-185 chr16 56034213 56034465 + 3 NA Intergenic L1MD1|LINE|L1 -78308 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 351-485 chr8 79862536 79862706 + 3 NA intron (NR_110954, intron 2 of 5) intron (NR_110954, intron 2 of 5) 9116 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 483-287 chr9 72861717 72861900 + 3 NA Intergenic AluSq2|SINE|Alu 12301 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 395-334 chr8 75614749 75614932 + 3 NA Intergenic Intergenic 74872 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 484-158 chr21 28286426 28286626 + 3 NA Intergenic L1MA5|LINE|L1 -57859 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 1219-10 chr8 91681555 91682340 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 335733 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 849-37 chr5 58378786 58379204 + 3 NA Intergenic L3|LINE|CR1 81091 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 661-68 chr3 88564421 88564873 + 3 NA Intergenic Intergenic 226191 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 429-54 chr11 56515186 56515366 + 3 NA Intergenic Intergenic -23906 NM_001005282 219484 Hs.554522 NM_001005282 ENSG00000181371 OR5M8 OR11-194 olfactory receptor family 5 subfamily M member 8 protein-coding 603-131 chr5 53037693 53038030 + 3 NA intron (NR_073106, intron 2 of 29) intron (NR_073106, intron 2 of 29) 48509 NR_073107 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 568-170 chr6 61316858 61317141 + 3 NA Intergenic ALR/Alpha|Satellite|centr -257131 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 800-60 chr7 62937656 62938121 + 3 NA Intergenic ALR/Alpha|Satellite|centr 366168 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 377-63 chr11 21870254 21870417 + 3 NA Intergenic L1MEc|LINE|L1 -322750 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 727 chr1 34302170 34302638 + 3 NA Intergenic L1ME2z|LINE|L1 125497 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 812-32 chr20 39603100 39603471 + 3 NA Intergenic Intergenic -378537 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 414-157 chr2 110858576 110858790 + 3 NA intron (NM_001371254, intron 10 of 18) intron (NM_001371254, intron 10 of 18) 126110 NM_001371254 259-384 chr8 63378432 63378573 + 3 NA Intergenic L1MB3|LINE|L1 -87347 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 537-175 chr4 71308033 71308257 + 3 NA intron (NM_001098484, intron 3 of 25) L2|LINE|L2 -30908 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 473-154 chr20 41144821 41145100 + 3 NA intron (NM_182811, intron 1 of 31) intron (NM_182811, intron 1 of 31) -6960 NR_109889 101927117 Hs.668593 NR_109889 ENSG00000226648 PLCG1-AS1 TOP1-AS1 PLCG1 antisense RNA 1 ncRNA 445-273 chr8 96788593 96788880 + 3 NA intron (NM_016134, intron 2 of 7) L1MB8|LINE|L1 143494 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 679-110 chr8 119376391 119376715 + 3 NA Intergenic Intergenic -39893 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 340-393 chr4 35699049 35699283 + 3 NA Intergenic Intergenic 544773 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 602-15 chr10 121006035 121006462 + 3 NA Intergenic L1PA15-16|LINE|L1 154886 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 594-108 chr5 5555909 5556286 + 3 NA Intergenic Intergenic 133420 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 482-264 chr8 51766533 51766810 + 3 NA intron (NM_144651, intron 1 of 22) L1M4|LINE|L1 42774 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 456-14 chr1 159409379 159409564 + 3 NA intron (NM_001363558, intron 3 of 3) intron (NM_001363558, intron 3 of 3) 12001 NM_001363558 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 166-2 chr1 107843565 107843632 + 3 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -53625 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 495-234 chr7 41745579 41745882 + 3 NA intron (NR_027118, intron 2 of 3) LTR8B|LTR|ERV1 -42640 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 640-39 chr15 25073072 25073510 + 3 NA promoter-TSS (NR_003325) promoter-TSS (NR_003325) 185 NR_003324 100033421 NR_003324 ENSG00000206727 SNORD116-9 HBII-85-9 small nucleolar RNA, C/D box 116-9 snoRNA 423-70 chr13 106767109 106767265 + 3 NA Intergenic Intergenic 113307 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 579-88 chr20 54251448 54251661 + 3 NA Intergenic MIRb|SINE|MIR 43467 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 687-51 chr17 73731440 73731791 + 3 NA Intergenic Intergenic -6239 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 593-89 chr20 48353140 48353436 + 3 NA Intergenic Intergenic -6623 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 893-3 chr10 10418831 10419404 + 3 NA TTS (NR_120637) TTS (NR_120637) 43232 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 263-133 chr16 52805236 52805394 + 3 NA Intergenic L1ME3F|LINE|L1 -198340 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 918-31 chr9 24137706 24138201 + 3 NA Intergenic LFSINE_Vert|SINE|tRNA -287352 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 452-184 chr4 48207989 48208312 + 3 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) 61688 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 615-93 chr4 42859436 42859782 + 3 NA Intergenic L1ME1|LINE|L1 -33657 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 660-46 chr2 155450882 155451350 + 3 NA Intergenic Intergenic 752421 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 289-494 chr9 108709195 108709343 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 146717 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 626-110 chr5 24086685 24086921 + 3 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 135455 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 855-48 chr8 65409831 65410289 + 3 NA Intergenic Intergenic 152606 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 588-18 chr11 21296109 21296492 + 3 NA intron (NM_201551, intron 14 of 18) Kanga2_a|DNA|TcMar-Tc2 626714 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 349-471 chr7 28216854 28217008 + 3 NA intron (NR_034097, intron 2 of 3) MER127|DNA|TcMar-Tigger -36136 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 486-145 chr2 101325052 101325246 + 3 NA Intergenic L1M4|LINE|L1 15699 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 588-117 chr4 159534659 159534947 + 3 NA Intergenic L1MA7|LINE|L1 242981 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 800-64 chr8 83064754 83065062 + 3 NA Intergenic HERV4_I-int|LTR|ERV1 152804 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 511-19 chr10 44530417 44530703 + 3 NA Intergenic L1MB5|LINE|L1 -145463 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 630-88 chr3 107013905 107014142 + 3 NA Intergenic L1ME2|LINE|L1 226615 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 272-337 chr5 32888093 32888263 + 3 NA Intergenic Intergenic -59265 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 474-282 chr8 57691790 57691990 + 3 NA Intergenic Intergenic -54259 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 465-47 chr11 38781462 38781690 + 3 NA Intergenic L1MA10|LINE|L1 132718 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 558-109 chr2 205886864 205887053 + 3 NA Intergenic Intergenic 199216 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 441-280 chr9 103496632 103496802 + 3 NA Intergenic Intergenic -171684 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 509-62 chr12 130520224 130520460 + 3 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 108114 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 792-12 chr11 41168623 41169203 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 290723 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 545-77 chr15 27708055 27708444 + 3 NA Intergenic Intergenic 391066 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 617-7 chr1 199317291 199317770 + 3 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 168932 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 431-321 chr9 103641237 103641431 + 3 NA Intergenic Intergenic -316301 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 384-282 chr5 15882950 15883211 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -52102 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 485-296 chr8 122509391 122509737 + 3 NA intron (NR_131202, intron 2 of 3) L1ME3Cz|LINE|L1 59080 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1259-2 chr11 112423102 112423868 + 3 NA Intergenic LTR50|LTR|ERVL -58747 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 506-89 chr14 77998843 77999066 + 3 NA Intergenic L1ME1|LINE|L1 -171419 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 683-54 chr3 89633895 89634246 + 3 NA Intergenic L1MEd|LINE|L1 526449 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 640-102 chr4 167300519 167300852 + 3 NA Intergenic L1MCa|LINE|L1 -66095 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 469-9 chr1 102870031 102870221 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 238370 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 498-89 chr14 83608140 83608367 + 3 NA Intergenic L1PA10|LINE|L1 965621 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 355-63 chr10 86238740 86238938 + 3 NA intron (NM_017551, intron 2 of 15) MSTA-int|LTR|ERVL-MaLR 25949 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 449-107 chr19 52799224 52799512 + 3 NA non-coding (NR_163139, exon 6 of 6) non-coding (NR_163139, exon 6 of 6) -12577 NM_198457 162966 Hs.696848 NM_198457 ENSG00000189190 ZNF600 KR-ZNF1 zinc finger protein 600 protein-coding 822-53 chr7 9232106 9232598 + 3 NA Intergenic Intergenic -401918 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 662-49 chr2 122992299 122992727 + 3 NA Intergenic Intergenic 80968 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 640-122 chr7 27536678 27537147 + 3 NA intron (NM_152740, intron 6 of 7) intron (NM_152740, intron 6 of 7) -79062 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 457-208 chr5 123898672 123898872 + 3 NA Intergenic Intergenic 353355 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 346-507 chr8 132269824 132270102 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -164698 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 616-154 chr7 7747511 7747814 + 3 NA intron (NM_001302350, intron 3 of 4) LFSINE_Vert|SINE|tRNA -29055 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 353-183 chr16 83356507 83356640 + 3 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -151773 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 530-133 chr2 112204078 112204294 + 3 NA Intergenic L1M4|LINE|L1 50856 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 1630 chr19 52033013 52034036 + 3 NA 3' UTR (NM_014650, exon 5 of 5) 3' UTR (NM_014650, exon 5 of 5) -5145 NM_025040 80110 Hs.292336 NM_025040 ENSG00000142556 ZNF614 - zinc finger protein 614 protein-coding 503-171 chr20 24000832 24001166 + 3 NA Intergenic L1M5|LINE|L1 -12220 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 431-200 chr4 73647669 73648019 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -27213 NM_001270392 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 918-14 chr2 23606477 23606984 + 3 NA intron (NM_052920, intron 3 of 13) intron (NM_052920, intron 3 of 13) 221551 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 757-23 chr17 68567474 68568024 + 3 NA intron (NM_017565, intron 1 of 10) THE1D|LTR|ERVL-MaLR -9322 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 227-293 chr5 105332922 105333064 + 3 NA Intergenic Intergenic 233519 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 592-47 chr14 51906287 51906618 + 3 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 12119 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 486-217 chr4 4747019 4747315 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -14593 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 715-16 chr14 48462416 48462720 + 3 NA Intergenic AluJb|SINE|Alu -667554 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 369-96 chr13 86494204 86494345 + 3 NA Intergenic Intergenic -417646 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 574-77 chr2 72193785 72194247 + 3 NA intron (NR_135773, intron 19 of 21) MER58A|DNA|hAT-Charlie -46154 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 346-452 chr7 4112609 4112728 + 3 NA intron (NM_152744, intron 23 of 44) intron (NM_152744, intron 23 of 44) -17017 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 341-549 chr8 137707657 137707891 + 3 NA Intergenic L1ME1|LINE|L1 -294186 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 482-70 chr13 53472413 53472782 + 3 NA Intergenic Intergenic -320697 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 507-124 chr2 80229296 80229611 + 3 NA intron (NM_001282598, intron 7 of 17) MER21C|LTR|ERVL 75299 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 551-78 chr18 76791396 76791634 + 3 NA Intergenic LTR61|LTR|ERV1 30780 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 867-29 chr3 79617893 79618286 + 3 NA intron (NM_002941, intron 1 of 30) L1PB4|LINE|L1 110202 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 1148-11 chr5 113472078 113472563 + 3 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 16133 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 389-221 chr22 49612217 49612427 + 3 NA intron (NR_110523, intron 1 of 4) L1ME1|LINE|L1 45197 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 421-307 chr8 122917906 122918114 + 3 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 107762 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 429-38 chr10 60149888 60150183 + 3 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -9019 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 386-222 chr22 28132076 28132258 + 3 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -211555 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 606-48 chr14 24510529 24510850 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR -2424 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 394-161 chr2 46514541 46514726 + 3 NA intron (NM_001371283, intron 3 of 3) L1MB1|LINE|L1 -27857 NM_012249 23433 Hs.709193 NM_012249 ENSG00000119729 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 499-181 chr4 42902050 42902219 + 3 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 8868 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 502-27 chr10 14371083 14371363 + 3 NA Intergenic L1MC5|LINE|L1 12054 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 727-72 chr6 118378494 118378867 + 3 NA Intergenic Intergenic -122693 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 930-7 chr11 93992498 93992917 + 3 NA Intergenic LOR1-int|LTR|ERV1 -28647 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 483-279 chr8 144613754 144613935 + 3 NA promoter-TSS (NM_001308207) promoter-TSS (NM_001308207) -341 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 437-269 chr8 65420012 65420280 + 3 NA Intergenic MIR|SINE|MIR 142520 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 629-128 chr8 91177281 91177677 + 3 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -28006 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 568-120 chr20 40819763 40820021 + 3 NA Intergenic Intergenic -105269 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 541-227 chr8 14881261 14881610 + 3 NA intron (NM_139167, intron 1 of 7) LTR16A|LTR|ERVL -27925 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 943-9 chr14 85739151 85739712 + 3 NA Intergenic Intergenic -195247 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 709-47 chr2 214668841 214669210 + 3 NA Intergenic Intergenic 140658 NR_104216 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 476-151 chr2 164239094 164239405 + 3 NA Intergenic L2a|LINE|L2 329246 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 639-2 chr1 81282149 81282566 + 3 NA Intergenic Intergenic -23835 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 528-58 chr12 30032049 30032262 + 3 NA Intergenic L2a|LINE|L2 -247396 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 514-95 chr14 90968782 90969114 + 3 NA intron (NM_001322238, intron 1 of 14) intron (NM_001322238, intron 1 of 14) 91176 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 476-142 chr2 80416993 80417235 + 3 NA intron (NM_001282599, intron 2 of 11) HAL1M8|LINE|L1 103735 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 491-81 chr16 52249095 52249307 + 3 NA Intergenic Intergenic -9363 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 450-132 chr2 19482327 19482548 + 3 NA Intergenic L1MA10|LINE|L1 -123814 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 672-85 chr5 7945560 7945975 + 3 NA Intergenic Intergenic 76619 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 396-235 chr3 159864271 159864459 + 3 NA intron (NM_001197109, intron 1 of 6) intron (NM_001197109, intron 1 of 6) 24504 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 363-225 chr2 134757545 134757754 + 3 NA Intergenic L1MA4|LINE|L1 -38649 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 296-232 chr2 106684400 106684654 + 3 NA Intergenic L1MD2|LINE|L1 197163 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 293-334 chr5 38053500 38053658 + 3 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 27882 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 192-173 chr6 33993745 33993840 + 3 NA Intergenic Intergenic 6259 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 700-12 chr10 77436564 77436927 + 3 NA intron (NM_001271519, intron 1 of 28) L2a|LINE|L2 85873 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 1080-20 chr4 100752690 100753302 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -77883 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 483-125 chr2 136644392 136644627 + 3 NA Intergenic Intergenic -121036 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 608-98 chr3 83416975 83417298 + 3 NA Intergenic Intergenic 1430994 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 620-113 chr5 113791576 113791858 + 3 NA Intergenic Intergenic 278023 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 538-10 chr1 97527559 97527752 + 3 NA intron (NM_000110, intron 12 of 22) intron (NM_000110, intron 12 of 22) -269266 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 463 chr1 10248390 10248613 + 3 NA intron (NM_001365953, intron 2 of 20) intron (NM_001365953, intron 2 of 20) 17737 NM_001365953 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 610-9 chr1 209121265 209121544 + 3 NA Intergenic LTR78|LTR|ERV1 148950 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 253-266 chr3 99254545 99254711 + 3 NA Intergenic MIRc|SINE|MIR -352933 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 756-24 chr2 25557576 25557879 + 3 NA TTS (NM_001320937) TTS (NM_001320937) 92495 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 411-187 chr3 118245031 118245211 + 3 NA Intergenic L2c|LINE|L2 -396647 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 497-162 chr21 21053642 21053855 + 3 NA intron (NM_001352595, intron 1 of 14) L1M5|LINE|L1 55339 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 427-75 chr14 80543315 80543555 + 3 NA intron (NM_152446, intron 21 of 24) intron (NM_152446, intron 21 of 24) -312378 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 628-67 chr2 40454124 40454403 + 3 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -2173 NM_001351493 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 691-88 chr8 133964929 133965355 + 3 NA Intergenic Intergenic 78646 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 508-243 chr8 118310780 118311027 + 3 NA intron (NM_001101676, intron 4 of 4) L2c|LINE|L2 -199084 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 501-178 chr3 183241183 183241474 + 3 NA intron (NM_015078, intron 15 of 29) intron (NM_015078, intron 15 of 29) -11925 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 655-134 chr8 137705606 137706071 + 3 NA Intergenic Intergenic -292250 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 604-130 chr5 38085979 38086241 + 3 NA intron (NR_147009, intron 2 of 2) LTR106_Mam|LTR|LTR 60413 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 541-180 chr5 16247868 16248118 + 3 NA Intergenic L2|LINE|L2 67752 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 520-219 chr4 98104326 98104514 + 3 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 39056 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 447-239 chr6 152734312 152734593 + 3 NA Intergenic Intergenic -16345 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 534-223 chr6 122954917 122955143 + 3 NA Intergenic L1PA14|LINE|L1 -41205 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 382 chr1 14629979 14630134 + 3 NA intron (NM_201628, intron 1 of 14) MER63A|DNA|hAT-Blackjack 31339 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 586-23 chr10 106801259 106801519 + 3 NA intron (NM_001206569, intron 3 of 25) intron (NM_001206569, intron 3 of 25) 363317 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 610-155 chr7 8311031 8311334 + 3 NA intron (NR_125740, intron 3 of 5) L1PA16|LINE|L1 -48570 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 520-261 chr6 120900854 120901069 + 3 NA Intergenic Intergenic 433519 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 628-48 chr14 87201338 87201777 + 3 NA Intergenic Intergenic 295779 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 746-64 chr5 148242565 148243044 + 3 NA exon (NM_001363511, exon 2 of 2) exon (NM_001363511, exon 2 of 2) 4279 NM_001363511 105378220 Hs.534838 NM_001363511 ENSG00000248109 MARCOL - MARCO like protein-coding 575-197 chr8 105807006 105807293 + 3 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 253354 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 337-311 chr20 40776382 40776518 + 3 NA Intergenic MIR|SINE|MIR -61827 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 749-23 chr12 14375751 14376095 + 3 NA intron (NM_001286515, intron 1 of 12) intron (NM_001286515, intron 1 of 12) -9358 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 472-336 chr8 137839471 137839747 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 243936 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 551-224 chr8 132391807 132391993 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 55362 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 548-170 chr4 134697830 134698174 + 3 NA Intergenic Intergenic 274134 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 203-8 chr1 80748165 80748275 + 3 NA Intergenic L1ME3A|LINE|L1 106933 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 426-110 chr18 2646078 2646356 + 3 NA Intergenic AluJb|SINE|Alu 9178 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 825-45 chr6 114189121 114189513 + 3 NA intron (NR_125845, intron 8 of 9) HAL1|LINE|L1 -126440 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 509-142 chr22 47234065 47234367 + 3 NA Intergenic Intergenic -111355 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 670-30 chr12 46512181 46512682 + 3 NA intron (NR_125380, intron 3 of 3) L1PA14|LINE|L1 128324 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 844-65 chr7 62835027 62835575 + 3 NA Intergenic ALR/Alpha|Satellite|centr 468755 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 878-14 chr12 119358293 119358635 + 3 NA intron (NM_178499, intron 1 of 13) MSTD|LTR|ERVL-MaLR 23735 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 849-39 chr6 9355794 9356363 + 3 NA Intergenic L1MA4|LINE|L1 703869 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 470-122 chr2 34457228 34457506 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -220190 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 232-396 chr9 27809637 27809769 + 3 NA Intergenic Intergenic -235837 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 931-10 chr19 24346378 24346884 + 3 NA Intergenic ALR/Alpha|Satellite|centr -183184 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 455-215 chr5 46191340 46191520 + 3 NA Intergenic ALR/Alpha|Satellite|centr -495050 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 323-15 chr1 91644789 91644934 + 3 NA Intergenic Intergenic 143753 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 428-46 chr12 24675535 24675695 + 3 NA Intergenic MLT2B4|LTR|ERVL -91447 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 470-183 chr3 135738305 135738619 + 3 NA Intergenic L1ME4b|LINE|L1 -227266 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 337-215 chr18 5539833 5540048 + 3 NA intron (NM_001330557, intron 1 of 21) intron (NM_001330557, intron 1 of 21) 616 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 475-161 chr20 42185832 42186023 + 3 NA intron (NM_133170, intron 17 of 31) L2a|LINE|L2 -499556 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 978-12 chr2 64181431 64181797 + 3 NA Intergenic Intergenic 23871 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 492-47 chr11 109351335 109351647 + 3 NA Intergenic Intergenic -70699 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 916-16 chr2 144855966 144856315 + 3 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 188173 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 411-261 chr6 133637238 133637454 + 3 NA intron (NR_109982, intron 4 of 8) ORSL|DNA|hAT-Tip100 -183801 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 446-80 chr12 78513190 78513464 + 3 NA Intergenic MIR|SINE|MIR -153581 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 418-37 chr10 121768129 121768305 + 3 NA intron (NM_001001976, intron 11 of 11) L1MB3|LINE|L1 159814 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 408-238 chr4 64440235 64440463 + 3 NA Intergenic Intergenic -30889 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1076-10 chr18 11126217 11126914 + 3 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 22197 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 186-19 chr10 130161721 130161797 + 3 NA intron (NM_006541, intron 4 of 10) intron (NM_006541, intron 4 of 10) 25350 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 452-216 chr5 113368452 113368641 + 3 NA intron (NM_001085377, intron 2 of 18) HAL1|LINE|L1 66443 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 721-33 chr2 4455291 4455763 + 3 NA Intergenic Intergenic 200695 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 591-27 chr11 115080309 115080673 + 3 NA Intergenic MIR|SINE|MIR -253086 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 310-63 chr10 116621738 116621946 + 3 NA intron (NR_103727, intron 2 of 12) intron (NR_103727, intron 2 of 12) 889 NM_005396 5408 Hs.423598 NM_005396 ENSG00000266200 PNLIPRP2 PLRP2 pancreatic lipase related protein 2 (gene/pseudogene) protein-coding 715-50 chr3 23311496 23312038 + 3 NA intron (NM_001370225, intron 3 of 5) L1MA2|LINE|L1 108440 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 613-50 chr19 33901405 33901792 + 3 NA Intergenic Intergenic 104728 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 481-271 chr7 1962337 1962657 + 3 NA intron (NM_001013837, intron 15 of 18) L1ME1|LINE|L1 -21926 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 424-190 chr4 58508780 58509109 + 3 NA Intergenic Intergenic 27384 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 236-357 chr8 98747489 98747574 + 3 NA intron (NM_006281, intron 4 of 10) intron (NM_006281, intron 4 of 10) 78140 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 359-99 chr11 112999084 112999305 + 3 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -35734 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 493-86 chr14 70888760 70889016 + 3 NA Intergenic Intergenic -18571 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 506-168 chr20 61551965 61552224 + 3 NA intron (NM_001252338, intron 1 of 14) L1MB7|LINE|L1 -47667 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 668-38 chr17 11018879 11019313 + 3 NA Intergenic Intergenic -181009 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 548-11 chr1 158334190 158334439 + 3 NA Intergenic Intergenic -2783 NM_001764 910 Hs.1310 NM_001764 ENSG00000158485 CD1B CD1|CD1A|R1 CD1b molecule protein-coding 558-183 chr5 166277810 166278244 + 3 NA Intergenic Intergenic 648343 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 530-206 chr5 141357384 141357723 + 3 NA exon (NM_032053, exon 1 of 1) exon (NM_032053, exon 1 of 1) 2532 NM_032053 56111 Hs.368160 NM_018917 ENSG00000262576 PCDHGA4 PCDH-GAMMA-A4 protocadherin gamma subfamily A, 4 protein-coding 406 chr1 13443463 13443643 + 3 NA Intergenic Intergenic 33103 NM_001099852 645425 NM_001099852 ENSG00000204478 PRAMEF20 PRAMEF21 PRAME family member 20 protein-coding 826-37 chr20 56268720 56269177 + 3 NA Intergenic Intergenic 20216 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 461-205 chr5 17869109 17869349 + 3 NA intron (NR_134286, intron 4 of 7) L1MA2|LINE|L1 61955 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 421-241 chr5 75520059 75520229 + 3 NA intron (NM_001345921, intron 1 of 13) L1M3f|LINE|L1 -8163 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 472-131 chr18 40730514 40730735 + 3 NA Intergenic Intergenic 664338 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 648-41 chr14 65498382 65498779 + 3 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 27478 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 347-271 chr20 43988881 43989018 + 3 NA intron (NM_001098797, intron 2 of 8) MIR3|SINE|MIR 43053 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 493-88 chr14 78443047 78443293 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 39451 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 446-154 chr2 123626431 123626670 + 3 NA Intergenic Intergenic 398624 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 275-351 chr8 20625881 20626068 + 3 NA Intergenic L1ME4c|LINE|L1 -11048 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 527-79 chr14 38799783 38800034 + 3 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -82688 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 620-155 chrX 57279591 57279972 + 3 NA Intergenic L1PREC2|LINE|L1 -6896 NM_001353840 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 345-470 chr6 120374867 120375083 + 3 NA Intergenic Intergenic 359796 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 177-44 chr13 93486229 93486313 + 3 NA intron (NM_005708, intron 1 of 8) L2c|LINE|L2 259464 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 343-580 chr9 37365989 37366151 + 3 NA Intergenic Intergenic -56626 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 690-94 chr7 45314635 45315062 + 3 NA Intergenic L1MDa|LINE|L1 157057 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 300-422 chr7 40637912 40638102 + 3 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 341932 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 409-307 chr9 27443344 27443648 + 3 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -80818 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 645-99 chr5 106610645 106611100 + 3 NA Intergenic Intergenic 400142 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 742-59 chr4 48247532 48247830 + 3 NA intron (NM_003215, intron 1 of 17) L1MB5|LINE|L1 22157 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 340-74 chr11 43974078 43974275 + 3 NA Intergenic Intergenic 31539 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 533-221 chr7 105543245 105543476 + 3 NA intron (NM_001346603, intron 4 of 11) intron (NM_001346603, intron 4 of 11) 11159 NM_021930 60561 Hs.531388 NM_021930 ENSG00000135249 RINT1 RINT-1 RAD50 interactor 1 protein-coding 754-27 chr16 54969487 54969894 + 3 NA Intergenic Intergenic 38491 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 981-20 chr22 34726959 34727430 + 3 NA Intergenic L1MA10|LINE|L1 270722 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 429-90 chr14 66049812 66050031 + 3 NA Intergenic Intergenic -436450 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 511-40 chr12 14350480 14350755 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -15015 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 514-172 chr20 52679119 52679361 + 3 NA Intergenic MER20|DNA|hAT-Charlie 58402 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 522-78 chr14 53745829 53746134 + 3 NA Intergenic Intergenic 202503 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 411-186 chr3 117702680 117702877 + 3 NA Intergenic Intergenic -11853 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 727-20 chr12 26546115 26546475 + 3 NA intron (NM_002223, intron 37 of 56) L1MA4A|LINE|L1 286899 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 1085-19 chr7 51633618 51634086 + 3 NA Intergenic MER41D|LTR|ERV1 -240596 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 579-9 chr1 217021908 217022233 + 3 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 54922 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 258-423 chr9 37062063 37062223 + 3 NA Intergenic Intergenic -17753 NR_036592 100506710 Hs.446271 NR_036592 ENSG00000281649 EBLN3P EBLN3 endogenous Bornavirus like nucleoprotein 3, pseudogene pseudo 543-92 chr16 64671299 64671523 + 3 NA Intergenic Intergenic 450652 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 390-266 chr4 64851664 64851876 + 3 NA Intergenic Intergenic 152730 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 500-258 chr6 133019853 133020182 + 3 NA Intergenic L1ME3B|LINE|L1 -68063 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 458-118 chr2 4035509 4035785 + 3 NA Intergenic L1MEi|LINE|L1 61486 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 595-59 chr16 13041747 13041978 + 3 NA intron (NM_001145204, intron 2 of 4) MER5A|DNA|hAT-Charlie 140264 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 899 chr10 80624266 80624773 + 3 NA intron (NM_207372, intron 6 of 6) LTR81A|LTR|Gypsy -25278 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 750-8 chr10 24006591 24007089 + 3 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) -201951 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 317-314 chr3 114232443 114232623 + 3 NA Intergenic Intergenic 5045 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 922-17 chr19 30057304 30057967 + 3 NA Intergenic L1ME3F|LINE|L1 115396 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 374-181 chr2 57544578 57544730 + 3 NA Intergenic Intergenic -362997 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 683-16 chr12 17004558 17004898 + 3 NA Intergenic Intergenic 15981 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 530-170 chr3 111605717 111606046 + 3 NA intron (NM_001318889, intron 7 of 7) intron (NM_001318889, intron 7 of 7) -10535 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 596-30 chr10 76628191 76628533 + 3 NA Intergenic Intergenic -259682 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 488-72 chr13 100398993 100399308 + 3 NA intron (NR_148027, intron 20 of 23) intron (NR_148027, intron 20 of 23) 81865 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 644-97 chr7 76181530 76181877 + 3 NA Intergenic AluJo|SINE|Alu -20193 NM_001291831 222183 Hs.511025 NM_001039212 ENSG00000177679 SRRM3 - serine/arginine repetitive matrix 3 protein-coding 658-22 chr10 111551843 111552066 + 3 NA Intergenic Intergenic 437663 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 445-24 chr10 35228159 35228428 + 3 NA Intergenic L1ME3C|LINE|L1 -18732 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 474-196 chr4 23690473 23690672 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 190720 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 371-102 chr14 30151869 30151997 + 3 NA Intergenic L1ME1|LINE|L1 -224086 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 643-137 chr9 102345383 102345745 + 3 NA Intergenic L1MB2|LINE|L1 -174073 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 724-13 chr12 129452220 129452575 + 3 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 243796 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 547-150 chr3 190241258 190241510 + 3 NA Intergenic L1PB1|LINE|L1 81062 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 265-309 chr5 79552797 79552985 + 3 NA Intergenic L2a|LINE|L2 -38757 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 347-278 chr21 17133514 17133689 + 3 NA Intergenic L1PA16|LINE|L1 -305289 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 940-30 chr5 133454445 133455061 + 3 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -27047 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 464-5 chr1 68846848 68847039 + 3 NA Intergenic MIR|SINE|MIR -208955 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 480-7 chr1 58176070 58176427 + 3 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 74255 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 372-454 chr7 42802694 42802934 + 3 NA Intergenic L1MCa|LINE|L1 -96367 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 333-242 chr2 73503947 73504074 + 3 NA intron (NM_015120, intron 10 of 22) intron (NM_015120, intron 10 of 22) 46907 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 375-443 chr9 31841114 31841341 + 3 NA Intergenic Intergenic -459737 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 476-250 chr7 10426534 10426712 + 3 NA Intergenic L1MA1|LINE|L1 -276053 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 514-231 chr5 118689118 118689418 + 3 NA Intergenic L2c|LINE|L2 93080 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 137-77 chr5 148596832 148596929 + 3 NA intron (NM_001040172, intron 1 of 5) L2b|LINE|L2 40181 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 547-198 chr6 27303442 27303709 + 3 NA Intergenic Intergenic 8657 NM_033482 94026 Hs.729955 NM_033482 ENSG00000158553 POM121L2 POM121-L|POM121L POM121 transmembrane nucleoporin like 2 protein-coding 1129-2 chr10 123398794 123399237 + 3 NA Intergenic MER63B|DNA|hAT-Blackjack 244613 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 522-226 chr6 131766450 131766796 + 3 NA Intergenic Intergenic -25549 NR_039610 100616455 NR_039610 ENSG00000266807 MIR548H5 - microRNA 548h-5 ncRNA 426-149 chr2 164397057 164397306 + 3 NA Intergenic Intergenic 171314 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 926-23 chr4 107424139 107424681 + 3 NA Intergenic Intergenic 295824 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 451-197 chr6 69550378 69550624 + 3 NA Intergenic L1M5|LINE|L1 245965 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 268-275 chr4 58005008 58005161 + 3 NA Intergenic L2b|LINE|L2 531244 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 518-120 chr2 4869329 4869590 + 3 NA Intergenic Intergenic -213237 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 358-84 chr11 133875885 133876108 + 3 NA Intergenic L1M5|LINE|L1 22585 NR_039846 100616119 NR_039846 ENSG00000284020 MIR4697 - microRNA 4697 ncRNA 475-29 chr10 78730549 78730739 + 3 NA Intergenic L1MB8|LINE|L1 336804 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 646-2 chr1 75389856 75390191 + 3 NA intron (NM_001320283, intron 1 of 21) L1PA17|LINE|L1 221091 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 527-155 chr20 42239856 42240068 + 3 NA intron (NM_133170, intron 15 of 31) intron (NM_133170, intron 15 of 31) -445521 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 477-84 chr12 133031671 133031849 + 3 NA TTS (NR_110091) TTS (NR_110091) 5462 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 718-6 chr1 115572203 115572556 + 3 NA Intergenic LTR37-int|LTR|ERV1 -69591 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 716-60 chr5 13946682 13947047 + 3 NA Intergenic L2a|LINE|L2 -2384 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 784-52 chr5 156881714 156882208 + 3 NA Intergenic L2c|LINE|L2 31666 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 498-210 chr5 34448786 34449029 + 3 NA Intergenic Intergenic -204183 NR_146599 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 428-100 chr18 12166058 12166232 + 3 NA Intergenic L1MA2|LINE|L1 -34634 NR_049896 497259 Hs.451609 NR_049896 C18orf61 - uncharacterized LOC497259 ncRNA 499-28 chr10 64606540 64606803 + 3 NA Intergenic Intergenic -218857 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 441-160 chr3 80278551 80278782 + 3 NA Intergenic Intergenic -486231 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 632-86 chr4 85464863 85465244 + 3 NA Intergenic Charlie23a|DNA|hAT-Charlie -10097 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 1045-7 chr18 59372340 59372909 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -13359 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 1033-9 chr5 133393426 133393803 + 3 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 34092 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 429-147 chr2 57100476 57100729 + 3 NA Intergenic L1MA1|LINE|L1 -807049 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 446-174 chr22 32919746 32920004 + 3 NA intron (NM_003490, intron 4 of 13) MIR3|SINE|MIR 86946 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 320-353 chr3 86127568 86127753 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -299610 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 522-74 chr14 43260384 43260715 + 3 NA Intergenic Intergenic 1246734 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 871-33 chr7 26524457 26525106 + 3 NA intron (NR_148500, intron 5 of 5) L1M5|LINE|L1 14044 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 415-197 chr4 56806767 56806979 + 3 NA Intergenic Intergenic 14600 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 441-70 chr13 107890670 107890868 + 3 NA Intergenic Intergenic -23273 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 727-41 chr18 132184 132642 + 3 NA Intergenic L1M5|LINE|L1 -20074 NR_107045 102466878 NR_107045 ENSG00000277521 MIR8078 hsa-mir-8078 microRNA 8078 ncRNA 496-285 chr8 84482633 84482899 + 3 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 67282 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 525-175 chr4 60939989 60940232 + 3 NA Intergenic Intergenic 17491 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 307-39 chr10 16203349 16203489 + 3 NA Intergenic L1MA2|LINE|L1 -233524 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 326-186 chr16 53599812 53599996 + 3 NA 3' UTR (NM_001308334, exon 26 of 26) 3' UTR (NM_001308334, exon 26 of 26) -96600 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 569-179 chr8 112417373 112417672 + 3 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -225971 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 421-164 chr20 16005807 16006099 + 3 NA intron (NM_001351663, intron 15 of 17) intron (NM_001351663, intron 15 of 17) -20071 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 577-81 chr18 71497742 71498004 + 3 NA Intergenic Intergenic 81083 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 489-83 chr14 87710277 87710593 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -55141 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 575-174 chr6 109329745 109329980 + 3 NA intron (NR_152435, intron 36 of 45) intron (NR_152435, intron 36 of 45) 51877 NM_001346500 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 455-62 chr12 91173974 91174288 + 3 NA intron (NM_001920, intron 2 of 7) intron (NM_001920, intron 2 of 7) 4515 NM_133505 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 985-16 chr5 11217040 11217804 + 3 NA intron (NM_001288715, intron 9 of 20) intron (NM_001288715, intron 9 of 20) 371495 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 703-101 chr8 135714405 135714803 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR 257148 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 625-30 chr14 45461017 45461426 + 3 NA Intergenic MIR|SINE|MIR -208019 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 398-252 chr4 170756337 170756561 + 3 NA Intergenic L1PA15-16|LINE|L1 -12714 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 1002-6 chr2 17202659 17203115 + 3 NA Intergenic MLT1E|LTR|ERVL-MaLR 315553 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 634-132 chr6 39407616 39407946 + 3 NA intron (NM_001289024, intron 2 of 9) intron (NM_001289024, intron 2 of 9) 23609 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 954-45 chr7 25923386 25924039 + 3 NA Intergenic Intergenic 26274 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 332-141 chr13 60670579 60670788 + 3 NA Intergenic L1PA16|LINE|L1 -2272 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 444-209 chr5 129996530 129996716 + 3 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 92158 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 329-585 chr8 117746597 117746770 + 3 NA Intergenic Intergenic 174230 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 671-100 chr8 88961111 88961591 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -633868 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 556-33 chr11 37435886 37436194 + 3 NA Intergenic Intergenic -502561 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 662-31 chr15 96563999 96564338 + 3 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 217486 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 397-366 chrX 67260625 67260807 + 3 NA Intergenic Intergenic -283305 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 315-46 chr10 25655313 25655478 + 3 NA intron (NR_108067, intron 2 of 4) L1ME1|LINE|L1 3683 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 494-11 chr1 116478802 116478994 + 3 NA promoter-TSS (NR_125972) promoter-TSS (NR_125972) -72 NR_125973 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 242-429 chr9 30929093 30929202 + 3 NA Intergenic Intergenic 452343 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 862-33 chr8 84276719 84277335 + 3 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 92361 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 575-13 chr1 208644304 208644651 + 3 NA Intergenic Intergenic -84211 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 492-189 chr4 74116599 74116816 + 3 NA Intergenic Intergenic -6566 NM_001351311 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 879-4 chr12 25021660 25022190 + 3 NA intron (NM_001321724, intron 8 of 17) intron (NM_001321724, intron 8 of 17) 24350 NM_001321724 645177 Hs.569157 NM_001321724 LOC645177 - uncharacterized LOC645177 protein-coding 358-381 chr5 106978229 106978459 + 3 NA intron (NR_104671, intron 1 of 3) intron (NR_104671, intron 1 of 3) 32670 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 1023-15 chr20 24856707 24857220 + 3 NA Intergenic LTR8B|LTR|ERV1 -92306 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 648-46 chr15 24691418 24691894 + 3 NA Intergenic L1MEc|LINE|L1 16262 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 541-59 chr13 106009401 106009747 + 3 NA Intergenic Intergenic 302744 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 454-341 chr9 88413562 88413806 + 3 NA intron (NM_006717, intron 1 of 5) AluSz|SINE|Alu 25240 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 400-263 chr4 128325300 128325526 + 3 NA Intergenic L2a|LINE|L2 -37600 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 493-84 chr14 57009247 57009472 + 3 NA Intergenic Intergenic 196201 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 453-77 chr15 58883605 58883801 + 3 NA non-coding (NR_135043, exon 18 of 19) non-coding (NR_135043, exon 18 of 19) 49976 NR_135042 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 332-286 chr2 229050773 229050937 + 3 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 181237 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 427-162 chr3 99093272 99093642 + 3 NA Intergenic Intergenic -191762 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 719-59 chr5 15471156 15471584 + 3 NA Intergenic Intergenic -28810 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 759-34 chr19 40026356 40026725 + 3 NA Intergenic L1M4b|LINE|L1 29480 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 580-40 chr12 95727399 95727655 + 3 NA intron (NM_001329701, intron 3 of 9) L1MB7|LINE|L1 62668 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 1158 chr10 58540547 58541300 + 3 NA intron (NM_001080512, intron 1 of 20) L1MB2|LINE|L1 28051 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 671-90 chr7 70954752 70955135 + 3 NA Intergenic Intergenic -177201 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 564-5 chr1 50267227 50267445 + 3 NA Intergenic L2|LINE|L2 156107 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 557-174 chr6 143002512 143002711 + 3 NA intron (NR_038987, intron 2 of 2) MER20B|DNA|hAT-Charlie 34971 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 326-28 chr1 114453430 114453564 + 3 NA intron (NM_015906, intron 4 of 19) intron (NM_015906, intron 4 of 19) 57706 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 338-280 chr2 167494408 167494600 + 3 NA Intergenic Intergenic 307132 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 345-516 chr8 59103082 59103234 + 3 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 15989 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 356-206 chr18 28306927 28307085 + 3 NA Intergenic L1M2|LINE|L1 -129876 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 341-537 chr8 124833600 124833772 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -11628 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 777-16 chr12 26500394 26500695 + 3 NA intron (NM_002223, intron 37 of 56) MamGypsy2-I|LTR|Gypsy 304971 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 408-110 chr14 99113114 99113336 + 3 NA Intergenic L1MEi|LINE|L1 158972 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 537-151 chr3 13181573 13181826 + 3 NA Intergenic L2c|LINE|L2 -108270 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 395-274 chr5 100749380 100749557 + 3 NA Intergenic L3|LINE|CR1 67097 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 1410 chr19 37131144 37131932 + 3 NA Intergenic L2a|LINE|L2 40898 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 487-122 chr19 9451353 9451640 + 3 NA Intergenic L1PA16|LINE|L1 -15918 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 340-539 chr8 91241371 91241618 + 3 NA intron (NM_001282357, intron 2 of 18) intron (NM_001282357, intron 2 of 18) -7825 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 858-17 chr15 83693746 83694229 + 3 NA intron (NM_207517, intron 2 of 29) intron (NM_207517, intron 2 of 29) 39864 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 645-123 chr8 84536451 84536876 + 3 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) 121179 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 475-11 chr1 175058924 175059094 + 3 NA Intergenic L1MB7|LINE|L1 -8824 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 339-349 chr3 15648080 15648228 + 3 NA TTS (NM_001323582) TTS (NM_001323582) 46185 NM_001281725 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 635-51 chr2 19625381 19625802 + 3 NA Intergenic Intergenic -243263 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 441-32 chr10 108829832 108830144 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -760695 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 882-30 chr3 145475031 145475378 + 3 NA Intergenic Intergenic 593981 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 593-4 chr1 63214578 63214946 + 3 NA intron (NR_038252, intron 4 of 11) L1MB7|LINE|L1 102495 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 181-166 chr8 129345882 129345943 + 3 NA Intergenic L2b|LINE|L2 -104672 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 366-464 chr9 13722477 13722695 + 3 NA Intergenic L1M2|LINE|L1 -205385 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 711-41 chr21 26874512 26874962 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -29328 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 406-177 chr21 31016222 31016407 + 3 NA Intergenic Intergenic 22162 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 431-257 chr6 124668287 124668466 + 3 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -294169 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 1052-3 chr11 17370890 17371428 + 3 NA intron (NM_001202439, intron 4 of 4) HUERS-P3-int|LTR|ERV1 17500 NM_000525 3767 Hs.248141 NM_000525 ENSG00000187486 KCNJ11 BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3 potassium voltage-gated channel subfamily J member 11 protein-coding 597-9 chr1 113172463 113172794 + 3 NA Intergenic L1MA4A|LINE|L1 33625 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 253-104 chr12 53468103 53468197 + 3 NA intron (NM_001128912, intron 12 of 14) intron (NM_001128912, intron 12 of 14) 3682 NR_109828 102157401 NR_109828 ENSG00000282977 PCBP2-OT1 TUC.338|TUC338|uc.338 PCBP2 overlapping transcript 1 ncRNA 500-122 chr2 11962132 11962527 + 3 NA Intergenic L1M2c|LINE|L1 -44787 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 674-26 chr14 28071028 28071398 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -397992 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 231-236 chr3 113823321 113823469 + 3 NA Intergenic Intergenic -15393 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 460-162 chr2 214493044 214493267 + 3 NA intron (NM_001080500, intron 3 of 3) intron (NM_001080500, intron 3 of 3) -17027 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 472-162 chr2 108306834 108307062 + 3 NA intron (NM_001056, intron 7 of 7) intron (NM_001056, intron 7 of 7) -15290 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 350-482 chr7 78803060 78803243 + 3 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -205837 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 350-336 chr4 11268020 11268237 + 3 NA Intergenic Intergenic -100699 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 543-28 chr10 26720393 26720680 + 3 NA intron (NM_001321978, intron 6 of 9) (ATAA)n|Simple_repeat|Simple_repeat 22835 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 444-262 chr8 102457663 102457829 + 3 NA Intergenic Charlie24|DNA|hAT-Charlie -45046 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 701-104 chr9 82582442 82582825 + 3 NA Intergenic Intergenic 480509 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 411-116 chr17 44998868 44999020 + 3 NA Intergenic Intergenic -30641 NM_006688 10882 Hs.134012 NM_006688 ENSG00000131094 C1QL1 C1QRF|C1QTNF14|CRF|CTRP14 complement C1q like 1 protein-coding 337-232 chr19 36655729 36655986 + 3 NA intron (NM_001322821, intron 4 of 5) L1MC4|LINE|L1 10980 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 524-183 chr4 115025719 115026072 + 3 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 87725 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 449-62 chr12 124727976 124728146 + 3 NA Intergenic Intergenic 111610 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 670-85 chr4 58319172 58319532 + 3 NA Intergenic Intergenic 216976 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 725-21 chr13 103056870 103057279 + 3 NA intron (NM_000452, intron 2 of 5) L3|LINE|CR1 9343 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 514-36 chr10 90164806 90165008 + 3 NA Intergenic L1MA1|LINE|L1 -207534 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 340-558 chr8 137061180 137061409 + 3 NA Intergenic L1MC5a|LINE|L1 352294 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 648-129 chr7 1392590 1392981 + 3 NA Intergenic Intergenic 66685 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 820-44 chr5 2690591 2691082 + 3 NA Intergenic MLT1G-int|LTR|ERVL-MaLR -21755 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 617-98 chr4 100324319 100324667 + 3 NA Intergenic Intergenic 70754 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 919-13 chr21 27356337 27356940 + 3 NA Intergenic Intergenic -365741 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 605-86 chr4 100056623 100056899 + 3 NA Intergenic Intergenic 106267 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 530-91 chr16 52206908 52207111 + 3 NA Intergenic MIR3|SINE|MIR -51555 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 431-47 chr10 90491448 90491650 + 3 NA intron (NR_110657, intron 2 of 6) L1P4a|LINE|L1 49256 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 824-30 chr3 190928956 190929462 + 3 NA Intergenic MIRb|SINE|MIR 51279 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 379-28 chr1 199492442 199492656 + 3 NA Intergenic L1MCb|LINE|L1 343951 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 490-168 chr20 60371233 60371492 + 3 NA Intergenic L1MC5|LINE|L1 62888 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 324-480 chr7 6304453 6304594 + 3 NA Intergenic AluJr|SINE|Alu -31899 NM_004227 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 360-442 chr7 111796516 111796751 + 3 NA intron (NM_001363540, intron 30 of 52) HUERS-P3-int|LTR|ERV1 -11872 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 791-60 chr5 167653342 167653744 + 3 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 79884 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 716-19 chr12 62424611 62424922 + 3 NA Intergenic L1MD2|LINE|L1 -42060 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 707-9 chr1 221577600 221577978 + 3 NA Intergenic L1MEc|LINE|L1 159111 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 1100-11 chr2 48121513 48122102 + 3 NA Intergenic L2a|LINE|L2 -192875 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 877-33 chr8 118981411 118981960 + 3 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 29422 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 338-520 chr7 129272406 129272610 + 3 NA intron (NM_001130720, intron 1 of 16) MLT1G-int|LTR|ERVL-MaLR 47478 NM_001130720 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 1745-3 chr5 148753780 148754812 + 3 NA Intergenic L1MA10|LINE|L1 -72297 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 453-232 chr6 128959045 128959319 + 3 NA intron (NM_000426, intron 1 of 64) HAL1|LINE|L1 76041 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 345-425 chr5 89894367 89894577 + 3 NA Intergenic L1MA2|LINE|L1 122248 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 595-140 chr6 45622538 45622891 + 3 NA Intergenic MIRc|SINE|MIR 200439 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 314-176 chr14 72113213 72113391 + 3 NA intron (NM_001370288, intron 2 of 16) MIRc|SINE|MIR 179775 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 453-76 chr15 41092268 41092522 + 3 NA intron (NM_017553, intron 4 of 35) intron (NM_017553, intron 4 of 35) 23851 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 428-20 chr1 217778710 217778889 + 3 NA intron (NM_138796, intron 7 of 10) intron (NM_138796, intron 7 of 10) 6321 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 588-118 chr4 187623585 187624003 + 3 NA intron (NR_110436, intron 2 of 2) L1MEf|LINE|L1 48847 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 689-90 chr6 154877703 154877991 + 3 NA Intergenic Intergenic 24487 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 375-399 chr8 36567148 36567312 + 3 NA Intergenic L1PA11|LINE|L1 -217144 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 842-12 chr14 58687691 58688116 + 3 NA Intergenic L1MB7|LINE|L1 49066 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 323-468 chr6 117739653 117739823 + 3 NA Intergenic L1MA9|LINE|L1 64269 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 397 chr1 40870675 40870841 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -8395 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 428-66 chr14 47158109 47158356 + 3 NA intron (NM_001113498, intron 3 of 16) Tigger3a|DNA|TcMar-Tigger 185014 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 1552 chr8 122334130 122334841 + 3 NA Intergenic Intergenic 234159 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 611-59 chr17 34762862 34763275 + 3 NA Intergenic L2b|LINE|L2 182319 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 606-129 chr5 42331727 42332088 + 3 NA Intergenic L1M5|LINE|L1 -91532 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 972-17 chr4 38395635 38396079 + 3 NA Intergenic MIRb|SINE|MIR 28943 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 626-62 chr2 44462242 44462548 + 3 NA intron (NM_024766, intron 3 of 10) L1ME4a|LINE|L1 100448 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 600-61 chr2 41232323 41232703 + 3 NA Intergenic L1MA4|LINE|L1 -645042 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 591-22 chr11 27122775 27123092 + 3 NA intron (NM_003986, intron 7 of 8) intron (NM_003986, intron 7 of 8) 82118 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 824-15 chr18 65397171 65397454 + 3 NA Intergenic Intergenic -352940 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 441-272 chr8 138143627 138143843 + 3 NA intron (NM_015912, intron 15 of 19) L3|LINE|CR1 -60190 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 543-227 chr7 36392148 36392458 + 3 NA intron (NM_001284302, intron 1 of 22) intron (NM_001284302, intron 1 of 22) -1946 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 514-62 chr12 65009863 65010267 + 3 NA Intergenic L2|LINE|L2 -17774 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 698-58 chr3 71516935 71517352 + 3 NA intron (NR_146142, intron 2 of 19) intron (NR_146142, intron 2 of 19) 24946 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 467-233 chr5 120909177 120909373 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 377811 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 908-21 chr2 126499534 126499976 + 3 NA Intergenic L1M4|LINE|L1 -156180 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 464-190 chr4 133064901 133065097 + 3 NA Intergenic Intergenic 84117 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 430-150 chr2 126682201 126682469 + 3 NA intron (NM_016815, intron 1 of 2) intron (NM_016815, intron 1 of 2) 26177 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 595-156 chr8 27491618 27491874 + 3 NA intron (NM_001256483, intron 1 of 17) intron (NM_001256483, intron 1 of 17) 603 NM_001256484 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 589-116 chr5 15676305 15676539 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -61420 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 432-87 chr15 81265208 81265392 + 3 NA intron (NM_001352686, intron 3 of 18) intron (NM_001352686, intron 3 of 18) -31670 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 347-185 chr18 68059370 68059511 + 3 NA Intergenic Intergenic -244618 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 609-70 chr21 27412349 27412675 + 3 NA Intergenic Intergenic -309867 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 221-235 chr5 18262352 18262504 + 3 NA Intergenic Intergenic 455154 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 945-5 chr13 50922540 50923203 + 3 NA intron (NM_001142279, intron 1 of 9) L1M4|LINE|L1 -12159 NR_046552 100874255 Hs.741501 NR_046552 RNASEH2B-AS1 - RNASEH2B antisense RNA 1 ncRNA 681-80 chr7 82883321 82883690 + 3 NA intron (NM_033026, intron 9 of 24) intron (NM_033026, intron 9 of 24) 279379 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 238-139 chr17 57830689 57830771 + 3 NA Intergenic Intergenic 19314 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 429-176 chr20 54016856 54017040 + 3 NA intron (NM_001366297, intron 4 of 8) intron (NM_001366297, intron 4 of 8) 42072 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 778-3 chr1 112174219 112174631 + 3 NA Intergenic Intergenic 183889 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 543-151 chr20 40720186 40720376 + 3 NA Intergenic Intergenic -5658 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 707-14 chr11 103753416 103753911 + 3 NA Intergenic Intergenic -96243 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 302-270 chr22 47506902 47507066 + 3 NA Intergenic MLT2B3|LTR|ERVL -19873 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 349-132 chr12 65223980 65224189 + 3 NA intron (NM_014319, intron 4 of 12) L1MB1|LINE|L1 54501 NM_001167614 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 550-158 chr3 194154837 194155096 + 3 NA Intergenic MER110A|LTR|ERV1 18818 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 580-104 chr21 14854815 14855077 + 3 NA intron (NR_146322, intron 2 of 3) intron (NR_146322, intron 2 of 3) 63722 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 442-129 chr2 53101414 53101627 + 3 NA Intergenic MLT2D|LTR|ERVL -398905 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 933-29 chr5 9845567 9846177 + 3 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -8505 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 434-223 chr5 64510108 64510371 + 3 NA intron (NM_001029875, intron 2 of 5) MIRb|SINE|MIR 4224 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 357-292 chr3 176741820 176741978 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie 75102 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 947-3 chr10 85336184 85336570 + 3 NA Intergenic L1MA1|LINE|L1 96395 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 317-540 chrUn_KI270544v1 959 1118 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 441-105 chr19 9341147 9341404 + 3 NA intron (NM_001202407, intron 5 of 5) intron (NM_001202407, intron 5 of 5) 16580 NM_001202425 100529215 Hs.728944 NM_001172650 ENSG00000270011 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 386-39 chr10 74818556 74818751 + 3 NA Intergenic Intergenic -6602 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 545-141 chr3 78087856 78088111 + 3 NA Intergenic Intergenic -39020 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 803-65 chr9_KI270823v1_alt 410156 410797 + 3 NA Intergenic Zaphod|DNA|hAT-Tip100 21780 NM_001127610 570 Hs.284712 NM_001701 ENSG00000136881 BAAT BACAT|BAT bile acid-CoA:amino acid N-acyltransferase protein-coding 299-305 chr3 191939889 191940046 + 3 NA Intergenic Intergenic -298663 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 408-65 chr11 44871054 44871248 + 3 NA intron (NM_130783, intron 3 of 9) intron (NM_130783, intron 3 of 9) 79009 NM_001318384 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 648-125 chr6 39992505 39992768 + 3 NA Intergenic Intergenic -58174 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 328-224 chr18 52093107 52093303 + 3 NA Intergenic Intergenic -246992 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 522-61 chr12 42698496 42698850 + 3 NA intron (NR_135028, intron 2 of 3) intron (NR_135028, intron 2 of 3) 6457 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 807-6 chr10 20587697 20588247 + 3 NA Intergenic Intergenic 36002 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 685-82 chr7 1803194 1803583 + 3 NA Intergenic AluSx3|SINE|Alu 40865 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 254-257 chr3 150142189 150142336 + 3 NA intron (NR_136187, intron 2 of 2) intron (NR_136187, intron 2 of 2) 45819 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 791-9 chr10 76490476 76491111 + 3 NA intron (NM_001305581, intron 6 of 6) L1M1|LINE|L1 -397251 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 654-119 chr8 5460423 5460830 + 3 NA Intergenic L1MC4a|LINE|L1 -465712 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 687-59 chr2 49746428 49746673 + 3 NA Intergenic L1MD2|LINE|L1 227653 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 416-193 chr2 213492764 213492939 + 3 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 208387 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 1047-9 chr15 87086499 87087107 + 3 NA Intergenic Intergenic -98377 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 438-207 chr5 9209901 9210103 + 3 NA intron (NM_003966, intron 8 of 22) intron (NM_003966, intron 8 of 22) -156107 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 285-164 chr18 28841504 28841655 + 3 NA Intergenic Intergenic -664449 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 410-156 chr2 187293191 187293406 + 3 NA Intergenic MIR|SINE|MIR 154954 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 332-411 chr5 50902457 50902588 + 3 NA Intergenic MLT2B1|LTR|ERVL 67665 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 400-128 chr17 52068826 52069046 + 3 NA intron (NM_001082533, intron 3 of 9) MLT2D|LTR|ERVL 89778 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 1070-12 chr22 48543329 48544021 + 3 NA intron (NR_038917, intron 4 of 4) intron (NR_038917, intron 4 of 4) 3712 NR_038917 284933 Hs.159057 NR_038917 ENSG00000281732 LOC284933 - uncharacterized LOC284933 ncRNA 402-125 chr18 70565888 70566206 + 3 NA Intergenic L1ME3G|LINE|L1 84907 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 333-77 chr11 10113435 10113628 + 3 NA intron (NM_030962, intron 2 of 39) L2a|LINE|L2 180676 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 1131-3 chr13 57132280 57133070 + 3 NA Intergenic Intergenic -8243 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 336-72 chr10 83801958 83802211 + 3 NA Intergenic L1M3f|LINE|L1 -124995 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 611-29 chr11 134768461 134768797 + 3 NA Intergenic L1MA4A|LINE|L1 32684 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 612-30 chr11 106116972 106117365 + 3 NA intron (NR_135099, intron 2 of 2) HERVL-int|LTR|ERVL 14948 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 709-26 chr16 8436977 8437563 + 3 NA Intergenic Intergenic 152568 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 647-106 chrX 42733306 42733595 + 3 NA Intergenic L1ME1|LINE|L1 44713 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 590-56 chr15 25576061 25576421 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -137185 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 437-281 chr8 126606633 126606848 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -48262 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 406-3 chr1 49029398 49029694 + 3 NA intron (NM_001323575, intron 5 of 12) L1M4b|LINE|L1 -227865 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 963-27 chr6 95698868 95699410 + 3 NA Intergenic L1MC1|LINE|L1 121604 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 301-152 chr16 79089645 79089814 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 511008 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 469-248 chr6 128546083 128546336 + 3 NA Intergenic L1MDa|LINE|L1 -25610 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 451-49 chr12 103455168 103455331 + 3 NA intron (NR_103526, intron 2 of 10) intron (NR_103526, intron 2 of 10) 40719 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 285-281 chr3 127379472 127379686 + 3 NA intron (NR_110147, intron 1 of 4) intron (NR_110147, intron 1 of 4) 11091 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 563-70 chr17 72645084 72645362 + 3 NA TTS (NM_001159770) TTS (NM_001159770) -4751 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 446-249 chr5 131525660 131525834 + 3 NA intron (NM_016340, intron 6 of 27) intron (NM_016340, intron 6 of 27) 109482 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 539-192 chr7 30114681 30115048 + 3 NA intron (NM_001350973, intron 13 of 13) L1MB7|LINE|L1 -20122 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 884-36 chr4 84174947 84175431 + 3 NA intron (NR_125909, intron 5 of 8) L1MA7|LINE|L1 123980 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 336-394 chr4 32638804 32638947 + 3 NA Intergenic Intergenic 287837 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 458-239 chr7 93420988 93421151 + 3 NA Intergenic L1MEh|LINE|L1 61786 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 607-60 chr17 81801646 81802048 + 3 NA Intergenic MER31A|LTR|ERV1 -2303 NM_000160 2642 Hs.208 NM_000160 ENSG00000215644 GCGR GGR|GL-R glucagon receptor protein-coding 501-224 chr5 175411252 175411552 + 3 NA Intergenic L1ME1|LINE|L1 32780 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 806-24 chr17 52339631 52340080 + 3 NA Intergenic Intergenic -50667 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 539-16 chr1 176211863 176212133 + 3 NA Intergenic Intergenic -4712 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 472-272 chr6 62713842 62714005 + 3 NA Intergenic MER33|DNA|hAT-Charlie -427696 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 439-60 chr11 111519176 111519360 + 3 NA intron (NM_001100388, intron 3 of 5) L2c|LINE|L2 4483 NM_001100388 399949 Hs.411600 NM_207430 ENSG00000183644 C11orf88 - chromosome 11 open reading frame 88 protein-coding 792-45 chr5 6303620 6304148 + 3 NA Intergenic Intergenic 33408 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 548-142 chr3 13919353 13919695 + 3 NA Intergenic L1PA16|LINE|L1 -13532 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 275-24 chr1 221231780 221231898 + 3 NA Intergenic Intergenic 104457 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 623-119 chr7 3075349 3075753 + 3 NA Intergenic L1MB5|LINE|L1 -31684 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 701-83 chr6 105844760 105845208 + 3 NA Intergenic Intergenic -241352 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 384-72 chr12 23025215 23025391 + 3 NA Intergenic Intergenic -150333 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 285-357 chr5 155801541 155801663 + 3 NA Intergenic Intergenic -525155 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 261-144 chr17 57227744 57227888 + 3 NA Intergenic L1MEg|LINE|L1 -28035 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 924-36 chr6 107826534 107827061 + 3 NA Intergenic AluY|SINE|Alu -2484 NM_001286408 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 505-235 chr5 34059749 34059947 + 3 NA intron (NR_146599, intron 7 of 11) intron (NR_146599, intron 7 of 11) -16635 NM_181435 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 761-29 chr2 162867046 162867529 + 3 NA Intergenic HERV16-int|LTR|ERVL -28520 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 674 chr1 50894911 50895327 + 3 NA intron (NM_007051, intron 1 of 18) L1M1|LINE|L1 65148 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 547-153 chr4 29012985 29013257 + 3 NA intron (NR_146499, intron 2 of 2) intron (NR_146499, intron 2 of 2) 16337 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 332-437 chr5 158294563 158294740 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 115122 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 620-93 chr3 145327021 145327385 + 3 NA Intergenic L1MB3|LINE|L1 741982 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 389-326 chr6 140555757 140555911 + 3 NA Intergenic LTR82A|LTR|ERVL -127980 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 990-8 chr15 27486777 27487258 + 3 NA intron (NM_033223, intron 6 of 9) intron (NM_033223, intron 6 of 9) -325698 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 460-60 chr12 24725183 24725461 + 3 NA Intergenic MIRb|SINE|MIR -141154 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 723-18 chr12 133057809 133058224 + 3 NA exon (NM_003428, exon 5 of 5) exon (NM_003428, exon 5 of 5) 20434 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 534-262 chr8 101387178 101387366 + 3 NA Intergenic LTR16B|LTR|ERVL 18379 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 385-358 chr7 54538833 54539131 + 3 NA Intergenic Intergenic -3343 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 275-184 chr2 44803722 44803878 + 3 NA Intergenic Intergenic 135088 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 691-75 chr6 83771048 83771569 + 3 NA Intergenic L1PREC2|LINE|L1 61866 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 413-54 chr11 86722605 86722843 + 3 NA Intergenic MamGypLTR3|LTR|Gypsy -50088 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 520-111 chr16 62900988 62901322 + 3 NA Intergenic Intergenic -864717 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 347-562 chrX 79343972 79344092 + 3 NA Intergenic L1PB2|LINE|L1 23302 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 331-575 chrX 117613523 117613783 + 3 NA Intergenic Intergenic 360085 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 1074-6 chr2 21969069 21969668 + 3 NA Intergenic HAL1ME|LINE|L1 -258716 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 353-118 chr12 94320755 94320956 + 3 NA intron (NM_001042399, intron 13 of 15) L1PREC2|LINE|L1 58334 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 958-23 chr6 162541842 162542317 + 3 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -185053 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 1044-5 chr14 81824114 81824740 + 3 NA Intergenic Charlie7a|DNA|hAT-Charlie -81289 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 796-4 chr1 185578850 185579443 + 3 NA intron (NR_110793, intron 2 of 3) L1PA11|LINE|L1 49342 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 592-146 chr5 118252929 118253242 + 3 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -29489 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 469-224 chr5 114839936 114840132 + 3 NA Intergenic L1MA4A|LINE|L1 -66621 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 843-3 chr10 56707228 56707745 + 3 NA Intergenic Intergenic -346213 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 237-27 chr10 15949841 15949959 + 3 NA Intergenic Intergenic -89367 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 359-37 chr1 208691484 208691671 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -37111 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 559-195 chr8 139054265 139054603 + 3 NA Intergenic Intergenic -140393 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 709 chr1 14055238 14055671 + 3 NA Intergenic Intergenic 306039 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 358-515 chr9 71566940 71567130 + 3 NA Intergenic L1M4a1|LINE|L1 -120064 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 552-120 chr20 31437016 31437237 + 3 NA Intergenic L2a|LINE|L2 -3506 NM_153324 245936 Hs.122509 NM_153324 ENSG00000180424 DEFB123 DEFB-23|DEFB23|ESC42-RELD defensin beta 123 protein-coding 466-66 chr12 85771244 85771498 + 3 NA Intergenic Intergenic 65038 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 604-20 chr10 84188854 84189292 + 3 NA Intergenic Intergenic -5464 NM_033100 92211 Hs.137556 NM_033100 ENSG00000148600 CDHR1 CORD15|PCDH21|PRCAD|RP65 cadherin related family member 1 protein-coding 492-191 chr4 83820897 83821136 + 3 NA Intergenic Intergenic 284908 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 959-9 chr14 63181960 63182420 + 3 NA Intergenic L2a|LINE|L2 -22253 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 526-201 chr5 105608802 105609146 + 3 NA Intergenic L1MA4|LINE|L1 509500 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 397-93 chr14 62065220 62065419 + 3 NA intron (NM_001367661, intron 4 of 8) MIR|SINE|MIR -52038 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 535-225 chr7 39841109 39841388 + 3 NA Intergenic Intergenic 107680 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 516-63 chr13 83294919 83295195 + 3 NA Intergenic L1PA16|LINE|L1 587336 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 479-259 chr8 123286116 123286380 + 3 NA Intergenic MIRc|SINE|MIR -10707 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 299-303 chr3 182584246 182584440 + 3 NA Intergenic Intergenic -77219 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 443-174 chr20 12777008 12777272 + 3 NA Intergenic L1ME2z|LINE|L1 159823 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 615-104 chr5 13688786 13689188 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 255493 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 463-63 chr11 106587492 106587685 + 3 NA Intergenic L1ME1|LINE|L1 336181 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 787-37 chr5 8690311 8690804 + 3 NA Intergenic Intergenic -149175 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 386-143 chr18 64690834 64691056 + 3 NA Intergenic Intergenic -430890 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 375-233 chr20 10024554 10024764 + 3 NA non-coding (NR_040710, exon 5 of 5) non-coding (NR_040710, exon 5 of 5) -10328 NM_022096 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 286-365 chr5 120327423 120327560 + 3 NA Intergenic Intergenic -136787 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 465-254 chr6 84317975 84318294 + 3 NA Intergenic L1ME1|LINE|L1 -90491 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 452-43 chr11 42416035 42416268 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -162461 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 234-280 chr4 107220212 107220386 + 3 NA Intergenic Charlie4z|DNA|hAT-Charlie -183986 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 524-238 chr7 50935677 50935928 + 3 NA Intergenic Intergenic -142349 NM_001371008 445-134 chr2 122521753 122522043 + 3 NA Intergenic Intergenic 551583 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 721-59 chr3 192101964 192102490 + 3 NA Intergenic MIRc|SINE|MIR -136403 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 526-136 chr2 129209048 129209349 + 3 NA Intergenic L1MEg|LINE|L1 64693 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 292-156 chr15 96962059 96962248 + 3 NA Intergenic Intergenic 178718 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 268-26 chr10 5153869 5154067 + 3 NA TTS (NR_027916) TTS (NR_027916) 31219 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 380-177 chr2 58671559 58671768 + 3 NA intron (NR_033873, intron 2 of 13) L1MEd|LINE|L1 150910 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 527-196 chr4 103813016 103813259 + 3 NA Intergenic L1M4b|LINE|L1 -93152 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 493-303 chr8 137116147 137116500 + 3 NA Intergenic (ATTAAT)n|Simple_repeat|Simple_repeat 297265 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 514-278 chr7 136256508 136256821 + 3 NA Intergenic Intergenic -279305 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 672-7 chr1 242837748 242838098 + 3 NA Intergenic Intergenic 263821 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 554-170 chr5 35979767 35979993 + 3 NA intron (NM_001171873, intron 3 of 5) THE1B|LTR|ERVL-MaLR 11510 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 627-31 chr14 68143964 68144297 + 3 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 320538 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 415-303 chr9 71018261 71018467 + 3 NA intron (NM_001366143, intron 1 of 25) L1ME3A|LINE|L1 103257 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 563-79 chr19 33574490 33574841 + 3 NA Intergenic LTR16A|LTR|ERVL -47288 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 493-125 chr19 7210919 7211188 + 3 NA intron (NM_001079817, intron 2 of 20) intron (NM_001079817, intron 2 of 20) 83361 NM_000208 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 528-133 chr2 128336634 128337026 + 3 NA Intergenic L1ME2|LINE|L1 -17962 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 635-59 chr2 206880231 206880581 + 3 NA Intergenic L1MA9|LINE|L1 -59112 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 824-40 chr5 95041346 95041714 + 3 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) 40336 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 712-86 chr6 120338166 120338681 + 3 NA Intergenic L1PB1|LINE|L1 323244 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 447-87 chr16 20286570 20286777 + 3 NA Intergenic Charlie16a|DNA|hAT-Charlie 40840 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 503-24 chr10 26251521 26251711 + 3 NA intron (NM_000818, intron 8 of 16) intron (NM_000818, intron 8 of 16) 34842 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 462-4 chr1 57527813 57528040 + 3 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -103005 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 462-296 chr9 30350951 30351206 + 3 NA Intergenic L1PB3|LINE|L1 57376 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 789-25 chr2 166553557 166554114 + 3 NA Intergenic L1MEc|LINE|L1 -66864 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 549-143 chr3 90036377 90036631 + 3 NA Intergenic Intergenic 928883 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 472-61 chr12 49847820 49847997 + 3 NA Intergenic Intergenic -4802 NM_181708 144233 Hs.142736 NM_181708 ENSG00000186666 BCDIN3D - BCDIN3 domain containing RNA methyltransferase protein-coding 475-172 chr22 47899566 47899767 + 3 NA Intergenic Intergenic 267992 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 514-302 chrX 50145484 50145712 + 3 NA Intergenic L1M5|LINE|L1 54774 NM_139289 8852 Hs.97633 NM_003886 ENSG00000147081 AKAP4 AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82 A-kinase anchoring protein 4 protein-coding 459-192 chr3 101482667 101482877 + 3 NA intron (NM_020654, intron 3 of 23) L1MC|LINE|L1 30440 NM_001077203 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 186-93 chr2 220142712 220142788 + 3 NA Intergenic L1MA7|LINE|L1 -236185 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 506-132 chr2 43118930 43119198 + 3 NA Intergenic MLT2B4|LTR|ERVL -16619 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 651-74 chr2 172368968 172369407 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -58149 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 504-9 chr1 113523819 113524141 + 3 NA intron (NM_001142782, intron 1 of 20) THE1B-int|LTR|ERVL-MaLR 133465 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 441-243 chr7 25128761 25128921 + 3 NA Intergenic L1M1|LINE|L1 -3480 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 410-243 chr5 73257657 73257860 + 3 NA Intergenic L1MC|LINE|L1 -55797 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 319-449 chr6 16144633 16144796 + 3 NA intron (NM_013262, intron 5 of 6) intron (NM_013262, intron 5 of 6) 3158 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 1100-17 chr7 96895099 96895800 + 3 NA Intergenic Intergenic -110104 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 488-255 chr7 33640133 33640435 + 3 NA Intergenic L1ME3A|LINE|L1 -264631 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 870-28 chr5 32773472 32773964 + 3 NA intron (NM_001364460, intron 2 of 6) intron (NM_001364460, intron 2 of 6) 62397 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 478-3 chr1 47500450 47500764 + 3 NA Intergenic L2b|LINE|L2 -63290 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 505-165 chr2 199217504 199217812 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 240281 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 489-132 chr2 68706422 68706788 + 3 NA Intergenic Intergenic -28206 NM_001166277 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 469-180 chr3 85162956 85163183 + 3 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -100805 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 403-284 chr7 63132853 63133068 + 3 NA Intergenic L1MA3|LINE|L1 171096 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 999-7 chr2 80296474 80297033 + 3 NA intron (NM_001282598, intron 7 of 17) MER20|DNA|hAT-Charlie 7999 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 472-46 chr11 74868751 74869099 + 3 NA intron (NM_001270381, intron 8 of 15) L1PA14|LINE|L1 80166 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 533-187 chr5 119920548 119920771 + 3 NA Intergenic L1PA13|LINE|L1 291100 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 628-111 chr6 13972828 13973109 + 3 NA intron (NM_001165032, intron 2 of 3) THE1B-int|LTR|ERVL-MaLR 47775 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 336-377 chr3 132517310 132517493 + 3 NA intron (NM_001329126, intron 49 of 56) intron (NM_001329126, intron 49 of 56) -79869 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 640-145 chr9 98655400 98655644 + 3 NA intron (NM_005458, intron 1 of 18) L2c|LINE|L2 53413 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 477-112 chr16 78483473 78483640 + 3 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 383902 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 746-55 chr4 71836422 71836831 + 3 NA Intergenic L1ME1|LINE|L1 -31106 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 463-154 chr2 188192897 188193102 + 3 NA intron (NR_126396, intron 1 of 2) L1P3|LINE|L1 94692 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 658-102 chr5 160891949 160892466 + 3 NA Intergenic L2|LINE|L2 -39996 NM_001366652 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 592-184 chr9 102030088 102030448 + 3 NA Intergenic Intergenic -291688 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 623-121 chr7 52653791 52654089 + 3 NA Intergenic Intergenic -381693 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 816-32 chr3 190017639 190018113 + 3 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 103021 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 484-230 chr5 147776010 147776235 + 3 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 6606 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 510-103 chr17 53670989 53671217 + 3 NA Intergenic Intergenic -151824 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 456-107 chr15 62355541 62355727 + 3 NA Intergenic Intergenic 12605 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 839-31 chr3 40569922 40570459 + 3 NA Intergenic MER4D0|LTR|ERV1 45230 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 608-86 chr20 52056977 52057196 + 3 NA Intergenic Intergenic 48398 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 375-313 chr5 8526869 8527121 + 3 NA Intergenic Intergenic 66070 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 290-336 chr5 36961712 36961840 + 3 NA intron (NM_015384, intron 5 of 45) intron (NM_015384, intron 5 of 45) 85007 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 262-243 chr20 11184914 11185056 + 3 NA Intergenic L1MC3|LINE|L1 88398 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 426-286 chr8 35648817 35649021 + 3 NA intron (NM_001322818, intron 4 of 16) intron (NM_001322818, intron 4 of 16) 61401 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 552-46 chr12 55329234 55329505 + 3 NA Intergenic Intergenic -2332 NM_054104 254786 Hs.553653 NM_054104 ENSG00000205329 OR6C3 OST709 olfactory receptor family 6 subfamily C member 3 protein-coding 399-79 chr13 88903457 88903673 + 3 NA Intergenic L1MA8|LINE|L1 276712 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 348-351 chr4 40196431 40196640 + 3 NA promoter-TSS (NM_004310) promoter-TSS (NM_004310) -372 NM_001278362 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 247-284 chr4 10834665 10834779 + 3 NA Intergenic LTR37A|LTR|ERV1 -149954 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 500-304 chr8 121015749 121016063 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -203860 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 455-64 chr13 54145632 54145847 + 3 NA Intergenic Intergenic -12868 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 540-73 chr14 89785278 89785647 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR -166297 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 604-42 chr13 61037097 61037445 + 3 NA Intergenic L1M5|LINE|L1 162609 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 453-90 chr17 68785690 68785968 + 3 NA Intergenic Intergenic 157675 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 385-127 chr17 12456459 12456645 + 3 NA Intergenic L1MC1|LINE|L1 -93416 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 306-69 chr10 131843346 131843527 + 3 NA Intergenic Intergenic -53237 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 432-61 chr12 30596236 30596504 + 3 NA Intergenic L1ME2|LINE|L1 80874 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 398-265 chr5 31084678 31084832 + 3 NA Intergenic Intergenic -108931 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 386-59 chr11 91632250 91632456 + 3 NA Intergenic Intergenic -592681 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 284-257 chr3 32182771 32182925 + 3 NA Intergenic L1ME4a|LINE|L1 -55831 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 222-339 chr7 43136797 43136922 + 3 NA intron (NR_135295, intron 3 of 6) L2c|LINE|L2 -14036 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 457-108 chr2 31147207 31147485 + 3 NA Intergenic L1MC5a|LINE|L1 -8906 NM_001329096 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 395-141 chr18 6123157 6123350 + 3 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -133491 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 277-277 chr3 157415490 157415616 + 3 NA intron (NM_024621, intron 5 of 13) L2b|LINE|L2 -21297 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 851-7 chr12 46876679 46877099 + 3 NA Intergenic Intergenic -50892 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 516-160 chr22 19303432 19303715 + 3 NA Intergenic PRIMAX-int|LTR|ERV1 -11854 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 582-161 chr8 131094351 131094698 + 3 NA Intergenic Intergenic -53615 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 465-274 chr7 54456514 54456832 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -85652 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 474-303 chr8 142310570 142310780 + 3 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 92507 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 362-414 chr7 111324930 111325162 + 3 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 233919 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 423-136 chr2 107358517 107358748 + 3 NA Intergenic Intergenic -9107 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 942-2 chr1 73506398 73506920 + 3 NA Intergenic L1ME1|LINE|L1 -168020 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 610-100 chr21 19655787 19656005 + 3 NA Intergenic Intergenic 243859 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 436-86 chr14 82324065 82324335 + 3 NA Intergenic L1M2|LINE|L1 -318432 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 483-102 chr19 58241195 58241401 + 3 NA intron (NM_001320792, intron 4 of 7) AluJo|SINE|Alu 12384 NM_001320787 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 452-237 chr6 123259290 123259483 + 3 NA intron (NM_006073, intron 35 of 40) intron (NM_006073, intron 35 of 40) -180218 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 590-80 chr2 51059099 51059330 + 3 NA intron (NR_135237, intron 2 of 10) L1ME1|LINE|L1 26613 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 467-31 chr10 67547203 67547379 + 3 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 118369 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 485-298 chr8 126741213 126741571 + 3 NA Intergenic L1PB3|LINE|L1 -182914 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 747-74 chr9 80688871 80689213 + 3 NA Intergenic Intergenic 714019 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 501-290 chrX 137506266 137506484 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -59752 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 525-189 chr5 8184201 8184450 + 3 NA Intergenic Intergenic 273239 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 258-128 chr14 70861563 70861692 + 3 NA Intergenic MER57A-int|LTR|ERV1 -45832 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 367-161 chr17 32654225 32654372 + 3 NA intron (NM_015194, intron 18 of 21) intron (NM_015194, intron 18 of 21) 167305 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 552-68 chr14 101114386 101114630 + 3 NA Intergenic Intergenic -6348 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 506-7 chr1 76364992 76365254 + 3 NA intron (NM_001349111, intron 3 of 5) L1PA17|LINE|L1 290377 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 245-91 chr12 20561706 20561802 + 3 NA intron (NM_000921, intron 2 of 15) intron (NM_000921, intron 2 of 15) -10110 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 379-25 chr1 187410452 187410612 + 3 NA Intergenic L1MA9|LINE|L1 -33096 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 704-74 chr6 164677385 164677822 + 3 NA Intergenic Intergenic 144460 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 732-90 chr8 37124084 37124417 + 3 NA Intergenic L1M5|LINE|L1 339876 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 456-190 chr22 33090277 33090483 + 3 NA Intergenic L2a|LINE|L2 -18149 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 670-94 chr5 26187491 26187916 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 850883 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 349-393 chr4 163601421 163601572 + 3 NA intron (NM_017923, intron 1 of 3) intron (NM_017923, intron 1 of 3) 12038 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 646-98 chr4 189315137 189315535 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -344270 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 195-212 chr6 50639410 50639509 + 3 NA Intergenic Intergenic -74085 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 562-140 chr3 42196156 42196439 + 3 NA intron (NM_001349247, intron 10 of 16) intron (NM_001349247, intron 10 of 16) 36104 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 431-174 chr3 36619471 36619766 + 3 NA Intergenic Intergenic 120243 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 962-3 chr1 153016951 153017467 + 3 NA Intergenic L1MB3|LINE|L1 -13994 NM_003125 6699 Hs.1076 NM_003125 ENSG00000169469 SPRR1B CORNIFIN|GADD33|SPR-IB|SPRR1 small proline rich protein 1B protein-coding 550-10 chr1 107471603 107471790 + 3 NA intron (NM_001113226, intron 6 of 6) intron (NM_001113226, intron 6 of 6) 216803 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 215-58 chr11 114225172 114225269 + 3 NA intron (NM_006006, intron 4 of 6) intron (NM_006006, intron 4 of 6) -70593 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 413-312 chr8 121993426 121993629 + 3 NA Intergenic MIR|SINE|MIR -352087 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 540-113 chr2 81522195 81522501 + 3 NA Intergenic Intergenic -55402 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 438-264 chr7 111342658 111342917 + 3 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 219504 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 312-181 chr16 87788503 87788660 + 3 NA Intergenic L1M5|LINE|L1 -9433 NR_120309 102724467 Hs.587857 NR_120309 LOC102724467 - uncharacterized LOC102724467 ncRNA 385-183 chr2 138411049 138411233 + 3 NA Intergenic Intergenic -90629 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 568-188 chr7 156359512 156359711 + 3 NA Intergenic Intergenic 85977 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 432-204 chr4 96908456 96908727 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -458335 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 400-113 chr15 89446777 89446915 + 3 NA Intergenic AluSq2|SINE|Alu 46675 NR_160724 105371031 NR_160724 LOC105371031 - uncharacterized LOC105371031 ncRNA 488-178 chr3 134504002 134504185 + 3 NA intron (NR_148353, intron 2 of 12) L1PA17|LINE|L1 17920 NM_001353111 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 792-35 chr2 214358622 214359069 + 3 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -52209 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 585-173 chr9 106033743 106034021 + 3 NA Intergenic Intergenic 339341 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 572-134 chr5 26523692 26524027 + 3 NA Intergenic L1PA3|LINE|L1 514727 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 517-299 chrX 64747917 64748239 + 3 NA Intergenic L1PB2|LINE|L1 228372 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 528-49 chr11 37624622 37624835 + 3 NA Intergenic L2c|LINE|L2 -313873 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 522-195 chr4 126417695 126418118 + 3 NA Intergenic L1MB2|LINE|L1 910647 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 643-112 chr7 13418441 13418779 + 3 NA Intergenic L1MC4|LINE|L1 567904 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 605-64 chr20 33879937 33880327 + 3 NA Intergenic AluSx1|SINE|Alu 68784 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 448-109 chr2 57411770 57411950 + 3 NA Intergenic L1MA2|LINE|L1 -495791 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 540-233 chrX 57782917 57783157 + 3 NA Intergenic MER4B-int|LTR|ERV1 -102777 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 368-408 chr6 140402885 140403088 + 3 NA Intergenic Intergenic 197734 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 308-494 chr8 87429373 87429512 + 3 NA Intergenic Intergenic 444573 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 652-105 chr6 132468157 132468416 + 3 NA intron (NR_137169, intron 7 of 8) intron (NR_137169, intron 7 of 8) 44497 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 429-45 chr10 115921576 115921773 + 3 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 273115 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 541-84 chr16 84022787 84023082 + 3 NA intron (NM_001080442, intron 5 of 9) intron (NM_001080442, intron 5 of 9) 19223 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 351-402 chr5 152362002 152362147 + 3 NA Intergenic FRAM|SINE|Alu 43205 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 325-459 chr5 117110822 117110968 + 3 NA Intergenic Intergenic -304617 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 461-235 chr6 77036643 77036871 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 427265 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 523-241 chr6 40101533 40101813 + 3 NA Intergenic Intergenic -167211 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 775-63 chr4 185961008 185961402 + 3 NA Intergenic HAL1|LINE|L1 -4833 NM_021069 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 474-184 chr3 111475815 111475998 + 3 NA Intergenic MIR3|SINE|MIR -66291 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 575-213 chrX 120336794 120337118 + 3 NA Intergenic L1M4|LINE|L1 -25133 NM_012069 23439 Hs.292599 NM_012069 ENSG00000101892 ATP1B4 - ATPase Na+/K+ transporting family member beta 4 protein-coding 498-165 chr3 34587565 34587762 + 3 NA Intergenic L1PA15|LINE|L1 789033 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 472-68 chr12 128635092 128635374 + 3 NA intron (NM_001136103, intron 4 of 8) intron (NM_001136103, intron 4 of 8) 188725 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 947-25 chr7 36935500 36936045 + 3 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -16340 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 699-88 chr5 161875716 161876071 + 3 NA intron (NM_000806, intron 7 of 10) intron (NM_000806, intron 7 of 10) 25168 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 575-15 chr10 16181652 16181946 + 3 NA Intergenic Intergenic -255144 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 507-214 chr6 40073897 40074089 + 3 NA Intergenic L1PB1|LINE|L1 -139531 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 940-35 chr7 52591933 52592374 + 3 NA Intergenic Intergenic -443480 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 370-487 chrX 67941251 67941475 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 396740 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 203-93 chr18 50594514 50594604 + 3 NA intron (NM_001292039, intron 1 of 4) L1ME2|LINE|L1 34472 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 840-24 chr19 24343824 24344286 + 3 NA Intergenic ALR/Alpha|Satellite|centr -180608 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 605-69 chr21 27634724 27635101 + 3 NA Intergenic Intergenic -87467 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 363-459 chr8 131486149 131486357 + 3 NA Intergenic Intergenic -417840 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 359-174 chr16 68575833 68576038 + 3 NA 3' UTR (NM_001305204, exon 5 of 5) 3' UTR (NM_001305204, exon 5 of 5) 36644 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 488-119 chr19 37418823 37419071 + 3 NA intron (NM_001330482, intron 4 of 4) L1PREC2|LINE|L1 47848 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 244-344 chr7 46083623 46083777 + 3 NA Intergenic Intergenic -162428 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 467-167 chr22 49588337 49588525 + 3 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -44965 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 442-243 chr6 24021607 24021759 + 3 NA Intergenic Intergenic -104532 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 1115-4 chr14 45781660 45782302 + 3 NA Intergenic L1MA7|LINE|L1 -66379 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 513-95 chr16 47714843 47715037 + 3 NA Intergenic Intergenic -143641 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 712-91 chr7 89842715 89843151 + 3 NA Intergenic Intergenic -276467 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 486-316 chr9 107523547 107523727 + 3 NA Intergenic MamRep605|LTR?|LTR? -33868 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 495-181 chr4 80360892 80361123 + 3 NA intron (NM_152770, intron 1 of 5) intron (NM_152770, intron 1 of 5) 25287 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 472-288 chr6 161360968 161361204 + 3 NA intron (NM_004562, intron 10 of 11) intron (NM_004562, intron 10 of 11) -87025 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 419-17 chr1 116093852 116094053 + 3 NA Intergenic L1M4|LINE|L1 -17803 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 372-507 chr9 3259636 3259877 + 3 NA intron (NM_134428, intron 14 of 17) Tigger16a|DNA|TcMar-Tigger 78167 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 439-135 chr2 76354458 76354766 + 3 NA Intergenic Intergenic -631353 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 995-11 chr2 28305382 28305966 + 3 NA intron (NM_001261840, intron 11 of 11) L1ME2|LINE|L1 4785 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 379-311 chr7 12870419 12870575 + 3 NA Intergenic Intergenic 182864 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 349-506 chr8 100786872 100787061 + 3 NA Intergenic L1MEd|LINE|L1 -64878 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 505-27 chr10 52925432 52925647 + 3 NA Intergenic Helitron1Na_Mam|RC|Helitron -153839 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 451-127 chr20 14289815 14290056 + 3 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 47677 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 431-135 chr2 102642252 102642526 + 3 NA intron (NM_003048, intron 1 of 11) L1MDa|LINE|L1 22836 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 473-14 chr1 121441413 121441630 + 3 NA Intergenic L1MA1|LINE|L1 -43616 NR_104189 100873165 Hs.568525 NR_104189 ENSG00000230806 SRGAP2-AS1 - SRGAP2 antisense RNA 1 ncRNA 416-250 chr4 66659162 66659446 + 3 NA Intergenic L2|LINE|L2 382480 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 679-89 chr5 42339010 42339271 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -84299 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 500-61 chr11 130748829 130749104 + 3 NA Intergenic L1M4a1|LINE|L1 76010 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 493-171 chr2 181779936 181780141 + 3 NA Intergenic Intergenic -99373 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 677-28 chr14 49698056 49698377 + 3 NA intron (NM_172193, intron 1 of 12) AluSg|SINE|Alu 5096 NM_172193 122773 Hs.509258 NM_172193 ENSG00000197776 KLHDC1 MST025 kelch domain containing 1 protein-coding 438-9 chr1 65845540 65845784 + 3 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) 52767 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 655-6 chr1 106336146 106336382 + 3 NA Intergenic Intergenic -308011 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 570-211 chr9 99514052 99514285 + 3 NA Intergenic Intergenic -138911 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 277-358 chr6 139808966 139809133 + 3 NA intron (NR_038399, intron 1 of 2) L1MB7|LINE|L1 37976 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 418-80 chr15 70232804 70233014 + 3 NA Intergenic HAL1ME|LINE|L1 -134992 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 789-16 chr12 126836088 126836546 + 3 NA Intergenic L1PA16|LINE|L1 38373 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 531-47 chr12 74289878 74290233 + 3 NA intron (NR_038300, intron 1 of 6) intron (NR_038300, intron 1 of 6) 2576 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 515-68 chr14 58047853 58048121 + 3 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 104226 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 578-139 chr5 91751758 91752142 + 3 NA Intergenic L1MD2|LINE|L1 -368633 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 903-46 chrX 63109882 63110442 + 3 NA Intergenic L1PA13|LINE|L1 241170 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 601-120 chr5 40480891 40481188 + 3 NA Intergenic Intergenic -198876 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 384-80 chr12 55014392 55014549 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -5504 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 456-77 chr13 53078296 53078615 + 3 NA Intergenic Intergenic 49642 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 637-39 chr14 58089174 58089488 + 3 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 62882 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 412-222 chr3 156937788 156938025 + 3 NA intron (NM_001004316, intron 5 of 12) L1MD2|LINE|L1 111553 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 314-488 chr5 167062053 167062233 + 3 NA Intergenic Intergenic -11099 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 440-94 chr17 77714959 77715181 + 3 NA Intergenic L1ME1|LINE|L1 13489 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 512-47 chr11 38273975 38274268 + 3 NA Intergenic Intergenic 335520 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 673-62 chr2 108009663 108010017 + 3 NA intron (NM_021815, intron 8 of 8) intron (NM_021815, intron 8 of 8) 23316 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 541-70 chr15 39416589 39416874 + 3 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -164348 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 394-65 chr11 104474405 104474681 + 3 NA Intergenic Intergenic 134759 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 477-134 chr19 56626584 56626765 + 3 NA intron (NR_163262, intron 3 of 5) AluSx|SINE|Alu -16485 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 484-24 chr10 5302353 5302617 + 3 NA Intergenic Intergenic -31249 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 864-25 chr20 62073376 62073990 + 3 NA Intergenic HERVL-int|LTR|ERVL -7873 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 506-212 chr4 127525204 127525530 + 3 NA Intergenic Intergenic -107590 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 333-329 chr22 26685017 26685192 + 3 NA intron (NR_110543, intron 1 of 5) AluJr|SINE|Alu 12261 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 390-252 chr3 179112113 179112300 + 3 NA intron (NR_125401, intron 2 of 2) Charlie14a|DNA|hAT-Charlie 35767 NR_125401 101928739 Hs.434553 NR_125401 ENSG00000229102 LOC101928739 - uncharacterized LOC101928739 ncRNA 794-32 chr4 32034632 32035077 + 3 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -12432 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 335-3 chr1 41985834 41986008 + 3 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) 50013 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 620-154 chr9 126735733 126736024 + 3 NA Intergenic L1M4|LINE|L1 -69128 NM_001135776 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 336-389 chr4 24965061 24965188 + 3 NA intron (NM_173463, intron 1 of 12) L1MDa|LINE|L1 15080 NM_173463 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 554-38 chr10 98864258 98864500 + 3 NA intron (NM_021828, intron 3 of 11) MER106A|DNA|hAT-Charlie 60189 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 882-32 chr4 17652347 17652816 + 3 NA intron (NM_015688, intron 11 of 17) MIRb|SINE|MIR 37940 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 315-384 chr5 76852072 76852225 + 3 NA intron (NM_130772, intron 1 of 4) intron (NM_130772, intron 1 of 4) 2134 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 860-26 chr2 96918283 96918708 + 3 NA promoter-TSS (NR_110209) promoter-TSS (NR_110209) -611 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 636-15 chr10 27709223 27709647 + 3 NA intron (NM_001242702, intron 5 of 6) MER2|DNA|TcMar-Tigger -35180 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 530-12 chr1 168940585 168940833 + 3 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 146296 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 574-130 chr4 101716462 101716742 + 3 NA Intergenic AluJo|SINE|Alu -74005 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 496-80 chr14 51347189 51347403 + 3 NA intron (NR_038358, intron 1 of 4) MSTA-int|LTR|ERVL-MaLR 13903 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 521-41 chr11 4017665 4017949 + 3 NA intron (NM_001277962, intron 2 of 12) L2a|LINE|L2 -76878 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 527-153 chr20 15461485 15461722 + 3 NA intron (NM_001351663, intron 7 of 17) MIRb|SINE|MIR 264763 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 937-28 chr5 114572573 114573260 + 3 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) -3125 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 758-57 chr3 118492765 118493265 + 3 NA Intergenic HAL1b|LINE|L1 -148753 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 381-59 chr10 93319862 93320000 + 3 NA exon (NM_133337, exon 48 of 53) exon (NM_133337, exon 48 of 53) 162403 NM_013451 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 342-369 chr4 97047822 97047947 + 3 NA Intergenic L1ME3A|LINE|L1 -319042 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 399-333 chr9 93786948 93787236 + 3 NA Intergenic L1MA2|LINE|L1 -32265 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 365-415 chr8 136104215 136104443 + 3 NA Intergenic Intergenic -426469 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 558-68 chr16 60685447 60685814 + 3 NA Intergenic Intergenic -325837 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 544-216 chr7 78743691 78743896 + 3 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -265195 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 592-153 chr6 72995566 72995907 + 3 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) -27983 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 226-383 chr9 93391941 93392048 + 3 NA Intergenic HERVL18-int|LTR|ERVL -45580 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 949-10 chr2 21879592 21880067 + 3 NA Intergenic L2|LINE|L2 -169177 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 427-15 chr1 213409738 213409912 + 3 NA Intergenic L2b|LINE|L2 358584 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 234-309 chr5 63738536 63738718 + 3 NA Intergenic AluJo|SINE|Alu 223665 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 496-282 chr8 69403827 69404197 + 3 NA Intergenic L1MC4|LINE|L1 44232 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 670-86 chr4 65010912 65011252 + 3 NA Intergenic Intergenic -6582 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 215-287 chr7 6033230 6033364 + 3 NA intron (NM_001271700, intron 2 of 2) intron (NM_001271700, intron 2 of 2) 1921 NM_001271700 100310846 Hs.744468 NM_001271700 ENSG00000157999 ANKRD61 - ankyrin repeat domain 61 protein-coding 535-49 chr12 34638678 34638911 + 3 NA Intergenic ALR/Alpha|Satellite|centr 616298 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 640-29 chr13 61001324 61001639 + 3 NA Intergenic L1M1|LINE|L1 198399 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 461-18 chr1 190324994 190325239 + 3 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 150894 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 471-98 chr16 65441822 65442047 + 3 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 134366 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 665-82 chr5 165960404 165960768 + 3 NA Intergenic AluSc|SINE|Alu 965784 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 485-11 chr1 103115173 103115439 + 3 NA Intergenic L2c|LINE|L2 -6784 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 687-81 chr3 187296124 187296544 + 3 NA non-coding (NR_135551, exon 2 of 2) non-coding (NR_135551, exon 2 of 2) -4312 NM_001031849 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 518-234 chr5 59610416 59610793 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -22979 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 1581-2 chr14 84508144 84509010 + 3 NA Intergenic L1M5|LINE|L1 -763355 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 595-109 chr3 58961543 58961813 + 3 NA intron (NR_147234, intron 4 of 10) L1ME1|LINE|L1 88347 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 470-134 chr2 120538231 120538472 + 3 NA Intergenic Intergenic -72002 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 497-266 chr7 90695762 90696069 + 3 NA intron (NM_001287135, intron 2 of 14) L2a|LINE|L2 -13483 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 899-5 chr12 22879491 22879837 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 254493 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 340-502 chr7 19288345 19288554 + 3 NA Intergenic Intergenic -143028 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 276-388 chr5 175145930 175146101 + 3 NA Intergenic L1MC3|LINE|L1 -150284 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 465-157 chr20 48379615 48379824 + 3 NA Intergenic MLT2B1|LTR|ERVL 19808 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 421-316 chr9 1448053 1448249 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie 396664 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 884-32 chr3 73836904 73837423 + 3 NA intron (NR_146637, intron 2 of 3) L1MA5|LINE|L1 27919 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 979-18 chr6 132884196 132884828 + 3 NA Intergenic Intergenic 67293 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 514-114 chr16 66120865 66121133 + 3 NA Intergenic L1ME4b|LINE|L1 -245692 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 469-122 chr19 52436459 52436762 + 3 NA intron (NM_001291368, intron 4 of 4) L1M4c|LINE|L1 7462 NM_001351679 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 1386-5 chr7 33351816 33352655 + 3 NA intron (NM_001033605, intron 14 of 21) intron (NM_001033605, intron 14 of 21) 222671 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 477-221 chr4 40168536 40168768 + 3 NA Intergenic L1MEj|LINE|L1 -22428 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 439-39 chr10 108785578 108785868 + 3 NA Intergenic HUERS-P3-int|LTR|ERV1 -716430 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 685-53 chr2 160787704 160788040 + 3 NA Intergenic L1ME2|LINE|L1 -294065 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 724-85 chr6 71556870 71557268 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 136042 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 470-249 chr7 33398324 33398555 + 3 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 268875 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 520-66 chr12 21872002 21872259 + 3 NA intron (NM_005691, intron 16 of 37) intron (NM_005691, intron 16 of 37) 64564 NM_020297 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 464-27 chr10 114295169 114295424 + 3 NA TTS (NM_001320804) TTS (NM_001320804) 55682 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 404-183 chr2 199115995 199116172 + 3 NA Intergenic Intergenic 341856 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 605-71 chr3 23634821 23635161 + 3 NA Intergenic L1MB7|LINE|L1 -170964 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 365-391 chr8 20859318 20859475 + 3 NA Intergenic Intergenic -94237 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 489-87 chr15 38722267 38722438 + 3 NA Intergenic Intergenic 25754 NR_160786 804-32 chr2 118519097 118519563 + 3 NA Intergenic L1MEg|LINE|L1 83636 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 1435-2 chr21 44633740 44634378 + 3 NA intron (NM_144991, intron 1 of 11) AluJr|SINE|Alu -3297 NM_181688 353333 Hs.474001 NM_181688 ENSG00000221859 KRTAP10-10 KAP10.10|KAP18.10|KRTAP18-10|KRTAP18.10 keratin associated protein 10-10 protein-coding 364-458 chr8 131359268 131359403 + 3 NA Intergenic L1PA14|LINE|L1 -318426 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 596-99 chr2 122631614 122632095 + 3 NA Intergenic Intergenic 441627 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 519-206 chr7 5100278 5100465 + 3 NA Intergenic L1MA5|LINE|L1 28311 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 409-112 chr17 68613005 68613239 + 3 NA Intergenic Intergenic -11755 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 564-88 chr19 58070675 58071010 + 3 NA Intergenic AluSg|SINE|Alu 11560 NM_003436 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 710-49 chr2 196499770 196500201 + 3 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 92998 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 1041-13 chr9 137856956 137857487 + 3 NA Intergenic L1M2|LINE|L1 18802 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 585-5 chr1 73216571 73216849 + 3 NA Intergenic Intergenic -89460 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 463-119 chr18 75151864 75152131 + 3 NA Intergenic L1ME4a|LINE|L1 53516 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 615-9 chr10 82429094 82429461 + 3 NA intron (NR_163253, intron 3 of 10) L1M4|LINE|L1 -196357 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 1018-20 chr2 196821145 196821742 + 3 NA Intergenic Intergenic -11167 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 297-140 chr14 78558130 78558298 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 154495 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 534-27 chr10 35798838 35799149 + 3 NA non-coding (NR_110138, exon 3 of 3) non-coding (NR_110138, exon 3 of 3) 20691 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 439-32 chr10 58973717 58973917 + 3 NA Intergenic Intergenic -25701 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 578-76 chr19 34886152 34886531 + 3 NA Intergenic L1MB4|LINE|L1 12602 NR_046222 100652909 Hs.374015 NR_046222 ENSG00000271649 LINC00904 - long intergenic non-protein coding RNA 904 ncRNA 574-79 chr2 89834291 89834545 + 3 NA Intergenic Intergenic -196511 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 572-85 chr2 59999199 59999466 + 3 NA Intergenic Intergenic 383704 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 361-217 chr2 78048176 78048371 + 3 NA intron (NR_110288, intron 1 of 3) L1PA13|LINE|L1 -40457 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 528-180 chr4 94325940 94326262 + 3 NA intron (NM_014485, intron 2 of 5) L1M2|LINE|L1 16735 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 328-462 chr5 100133334 100133472 + 3 NA Intergenic L1M5|LINE|L1 254851 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 498-143 chr2 215667246 215667449 + 3 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -50696 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 383-35 chr10 64398639 64398894 + 3 NA Intergenic L1MC1|LINE|L1 -426762 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 739-24 chr16 13887834 13888299 + 3 NA Intergenic Intergenic -32091 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 322-61 chr10 62339490 62339608 + 3 NA TTS (NR_104162) TTS (NR_104162) -34608 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 507-138 chr2 157610385 157610691 + 3 NA intron (NM_145259, intron 1 of 8) L1MA4A|LINE|L1 -12978 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 730-50 chr4 37198612 37199121 + 3 NA Intergenic L1PA15|LINE|L1 43125 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 679-86 chr5 15164484 15164878 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 101879 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 302-110 chr13 22666842 22666975 + 3 NA Intergenic Intergenic 231273 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 846-38 chr4 174543364 174543803 + 3 NA Intergenic L1MCa|LINE|L1 -20685 NM_001145816 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 335-93 chr11 43773689 43773922 + 3 NA intron (NM_016142, intron 3 of 10) intron (NM_016142, intron 3 of 10) 93067 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 792-10 chr11 15792632 15793089 + 3 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 148975 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 780-9 chr11 25717263 25717698 + 3 NA Intergenic L1PA15|LINE|L1 -471643 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 496-288 chr8 88934938 88935227 + 3 NA Intergenic L1PREC2|LINE|L1 -607599 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 461-119 chr2 16343652 16343920 + 3 NA Intergenic L1MA4A|LINE|L1 293359 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 428-298 chr8 83125025 83125259 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 213038 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 445-81 chr15 92240569 92240814 + 3 NA Intergenic L1PB3|LINE|L1 -153190 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 432-230 chr5 124090827 124091017 + 3 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 347598 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 407-158 chr2 196863986 196864135 + 3 NA intron (NM_001321099, intron 21 of 27) L1MA4|LINE|L1 -53784 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 400-58 chr11 96771392 96771612 + 3 NA Intergenic Intergenic 263077 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 810-50 chr6 155383349 155383958 + 3 NA Intergenic Intergenic -69169 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 609-82 chr3 179496713 179497059 + 3 NA Intergenic L1M1|LINE|L1 -45416 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 614-97 chr5 44143701 44144034 + 3 NA Intergenic L1M3b|LINE|L1 -244865 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 357-335 chr5 19361642 19361884 + 3 NA Intergenic L2a|LINE|L2 524509 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 456-346 chr9 115303895 115304183 + 3 NA intron (NR_163556, intron 3 of 7) L1M5|LINE|L1 162221 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 409-46 chr11 130359601 130359836 + 3 NA intron (NR_148980, intron 1 of 6) L1MB4|LINE|L1 44725 NR_148980 646383 Hs.155288 NM_001039787 ENSG00000175773 ZBTB44-DT - ZBTB44 divergent transcript ncRNA 907-10 chr15 88775566 88776108 + 3 NA Intergenic Charlie1|DNA|hAT-Charlie -27599 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 457-266 chr8 131290241 131290489 + 3 NA Intergenic Intergenic -249456 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 465-57 chr12 14522626 14522847 + 3 NA intron (NM_024829, intron 6 of 10) L1MA6|LINE|L1 -44996 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 579-183 chr9 90172534 90172787 + 3 NA Intergenic Intergenic -131161 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 482-125 chr2 77655899 77656238 + 3 NA Intergenic L2b|LINE|L2 -133635 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 411-183 chr3 94862156 94862382 + 3 NA Intergenic L1PA16|LINE|L1 -75994 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 497-30 chr10 115186357 115186683 + 3 NA intron (NM_207303, intron 8 of 28) L1MA3|LINE|L1 93155 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 529-186 chr5 129000043 129000231 + 3 NA intron (NM_001017372, intron 4 of 9) LTR52|LTR|ERVL 34649 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 541-40 chr12 13340491 13340675 + 3 NA Intergenic Intergenic 36162 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 884-37 chr4 94601345 94601708 + 3 NA intron (NM_006457, intron 7 of 12) intron (NM_006457, intron 7 of 12) 149584 NM_001256428 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 558-35 chr11 77167818 77168073 + 3 NA intron (NM_001127180, intron 15 of 48) intron (NM_001127180, intron 15 of 48) 39699 NM_001127180 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 514-137 chr2 21495125 21495396 + 3 NA Intergenic L1ME3B|LINE|L1 215392 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 421-19 chr1 209501425 209501606 + 3 NA Intergenic L1M2a|LINE|L1 69382 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 420-238 chr5 98466031 98466263 + 3 NA Intergenic Intergenic -302485 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 427-254 chr8 65081785 65082032 + 3 NA Intergenic Intergenic 98432 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 454-323 chr8 128321065 128321284 + 3 NA Intergenic Intergenic 171058 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 506-236 chr5 108817882 108818144 + 3 NA intron (NM_001308028, intron 3 of 17) intron (NM_001308028, intron 3 of 17) 69065 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 520-161 chr2 200022323 200022516 + 3 NA Intergenic Intergenic -66928 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 555-28 chr11 18428547 18428839 + 3 NA intron (NM_017448, intron 3 of 7) AluSz|SINE|Alu 16375 NM_017448 3948 Hs.654377 NM_002301 ENSG00000166796 LDHC CT32|LDH3|LDHX lactate dehydrogenase C protein-coding 653-82 chr3 3784577 3784966 + 3 NA intron (NR_149025, intron 2 of 5) intron (NR_149025, intron 2 of 5) -14660 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 530-219 chr6 146417445 146417718 + 3 NA intron (NM_001278067, intron 7 of 7) intron (NM_001278067, intron 7 of 7) -126252 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 421-192 chr3 124530133 124530358 + 3 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -54413 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 834-34 chr5 17713883 17714320 + 3 NA Intergenic Intergenic -58463 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 383-226 chr20 55191527 55191728 + 3 NA Intergenic Intergenic -231416 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 401-79 chr13 93047266 93047463 + 3 NA intron (NR_126360, intron 2 of 3) L1PA15-16|LINE|L1 2023 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 861-31 chr8 43592038 43592605 + 3 NA Intergenic ALR/Alpha|Satellite|centr 299879 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 701-91 chr8 19672131 19672498 + 3 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) 10269 NM_018371 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 659-104 chr7 49250003 49250455 + 3 NA Intergenic (AATATAT)n|Simple_repeat|Simple_repeat 325682 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 478-275 chr7 93623755 93624158 + 3 NA Intergenic Intergenic -49226 NM_001164737 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 491-236 chr6 164764925 164765132 + 3 NA Intergenic Intergenic 57035 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 454-335 chr9 77614884 77615073 + 3 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 33344 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 813-26 chr3 64903164 64903629 + 3 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -215396 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 783-77 chr8 118333373 118333832 + 3 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -221783 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 739-46 chr22 19443131 19443453 + 3 NA 3' UTR (NM_173793, exon 3 of 3) 3' UTR (NM_173793, exon 3 of 3) 4940 NM_173793 128977 Hs.659565 NM_173793 ENSG00000242259 C22orf39 - chromosome 22 open reading frame 39 protein-coding 346-504 chr8 131671571 131671725 + 3 NA Intergenic Intergenic -232445 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 384-190 chr2 214920960 214921163 + 3 NA intron (NR_110292, intron 2 of 3) L1MB3|LINE|L1 74114 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 572-22 chr11 39016676 39016979 + 3 NA Intergenic L1MC4|LINE|L1 367969 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 339-99 chr11 63693559 63693703 + 3 NA intron (NR_049750, intron 1 of 5) intron (NR_049750, intron 1 of 5) 12131 NM_001265591 10313 Hs.743229 NM_006054 ENSG00000133318 RTN3 ASYIP|HAP|NSPL2|NSPLII|RTN3-A1 reticulon 3 protein-coding 265-373 chr7 126627562 126627716 + 3 NA intron (NM_001371085, intron 7 of 10) L1M5|LINE|L1 430545 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 666-74 chr22 47955717 47956135 + 3 NA Intergenic Intergenic -318438 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 484-33 chr10 79962812 79963024 + 3 NA Intergenic Intergenic -13813 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 458-71 chr14 52380341 52380647 + 3 NA Intergenic Intergenic 66182 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 593-16 chr10 58959281 58959513 + 3 NA Intergenic Intergenic -40121 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 370-373 chr5 75086833 75087076 + 3 NA intron (NM_001164443, intron 22 of 24) intron (NM_001164443, intron 22 of 24) -34396 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 611-96 chr3 8015630 8015939 + 3 NA intron (NR_110131, intron 1 of 3) MER61A|LTR|ERV1 523 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 371-247 chr3 96396569 96396719 + 3 NA Intergenic Intergenic 36680 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 696-101 chr7 62823691 62824070 + 3 NA Intergenic ALR/Alpha|Satellite|centr 480176 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 485-269 chr7 55935313 55935607 + 3 NA intron (NM_182633, intron 6 of 6) L1ME3G|LINE|L1 -16417 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 422-36 chr10 95380596 95380879 + 3 NA intron (NM_001034955, intron 16 of 30) intron (NM_001034955, intron 16 of 30) 60443 NM_006434 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 456-313 chr8 65577262 65577517 + 3 NA Intergenic L1MA4A|LINE|L1 -14723 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 329-496 chr6 63983931 63984105 + 3 NA intron (NM_001292009, intron 35 of 43) A-rich|Low_complexity|Low_complexity 177182 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 803-2 chr1 75653126 75653478 + 3 NA Intergenic AluSx|SINE|Alu -37139 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 257-429 chr9 7194374 7194512 + 3 NA Intergenic MamTip2|DNA|hAT-Tip100 437093 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 214-119 chr16 54998751 54998865 + 3 NA Intergenic Intergenic 67609 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 866-16 chr14 29567545 29568108 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 359270 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 996-17 chr3 68420494 68421055 + 3 NA intron (NM_001252216, intron 3 of 4) MER20|DNA|hAT-Charlie -79863 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 561-64 chr14 25293760 25293982 + 3 NA Intergenic Intergenic -243574 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 257-190 chr2 74598890 74599027 + 3 NA intron (NM_001321739, intron 4 of 10) L1ME3F|LINE|L1 44798 NM_001318866 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 453-75 chr15 26144766 26144946 + 3 NA Intergenic L1ME3A|LINE|L1 29043 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 648-66 chr2 48015301 48015685 + 3 NA Intergenic Intergenic -109700 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 508-51 chr12 112886416 112886627 + 3 NA intron (NR_145127, intron 17 of 22) MER1B|DNA|hAT-Charlie -20256 NM_002534 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 526-145 chr2 205274669 205274934 + 3 NA intron (NM_057177, intron 16 of 21) intron (NM_057177, intron 16 of 21) -407699 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 677-26 chr13 94519668 94520092 + 3 NA intron (NM_001322186, intron 1 of 9) intron (NM_001322186, intron 1 of 9) 29526 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 673-59 chr2 82150186 82150554 + 3 NA Intergenic Intergenic -683424 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 514-129 chr18 70278815 70279011 + 3 NA Intergenic AluSx1|SINE|Alu -10132 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 790-54 chr8 115201359 115201909 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 466379 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 859-27 chr3 166194775 166195290 + 3 NA Intergenic Intergenic -357609 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 472-84 chr14 52279620 52279881 + 3 NA Intergenic L1PA4|LINE|L1 12052 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 247-112 chr14 33177642 33177789 + 3 NA intron (NM_001164749, intron 2 of 11) L1MB4|LINE|L1 238836 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 418-299 chr8 139525843 139526120 + 3 NA Intergenic Intergenic 177142 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 328-436 chr5 21846599 21846752 + 3 NA intron (NM_001317228, intron 4 of 11) intron (NM_001317228, intron 4 of 11) -37779 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 1140-3 chr11 82119300 82119733 + 3 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -228680 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 505-42 chr10 129452205 129452481 + 3 NA Intergenic Intergenic -14898 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 646-77 chr22 26950048 26950295 + 3 NA Intergenic AluSx1|SINE|Alu 46879 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 778 chr1 40457149 40457558 + 3 NA exon (NM_023070, exon 4 of 5) exon (NM_023070, exon 4 of 5) 6877 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 387-233 chr3 118924930 118925094 + 3 NA intron (NM_001353325, intron 5 of 7) Tigger16a|DNA|TcMar-Tigger -18064 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 454-214 chr3 143104300 143104479 + 3 NA Intergenic LTR28C|LTR|ERV1 -15382 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 559-33 chr12 21355452 21355750 + 3 NA intron (NM_001329201, intron 1 of 2) intron (NM_001329201, intron 1 of 2) 641 NM_001329201 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 653-54 chr18 3418771 3419165 + 3 NA intron (NM_001278686, intron 2 of 3) AluSq2|SINE|Alu 6112 NM_001278686 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 465-133 chr2 125931154 125931419 + 3 NA Intergenic Intergenic 186699 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 587-131 chr5 23181271 23181651 + 3 NA Intergenic Intergenic -326148 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 405-17 chr1 183731949 183732191 + 3 NA intron (NM_001297669, intron 2 of 18) intron (NM_001297669, intron 2 of 18) -73050 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 633-109 chr7 22275959 22276324 + 3 NA intron (NM_012294, intron 6 of 25) intron (NM_012294, intron 6 of 25) 81013 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 1046-12 chr20 10702217 10702864 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -28541 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 1022-14 chr2 121107602 121108116 + 3 NA Intergenic Intergenic 177343 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 358-455 chr7 131699496 131699723 + 3 NA Intergenic L1MEg|LINE|L1 -142981 NM_001018111 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 707-101 chr8 77320656 77321047 + 3 NA Intergenic Intergenic -129846 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 492-157 chr20 55986345 55986514 + 3 NA Intergenic L1MC4|LINE|L1 19090 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 353-326 chr3 74896280 74896536 + 3 NA Intergenic Intergenic -318068 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 444-282 chr9 81173924 81174238 + 3 NA Intergenic Intergenic 515454 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 619-121 chr7 62827726 62827971 + 3 NA Intergenic ALR/Alpha|Satellite|centr 476208 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 400-257 chr4 91222553 91222763 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 987627 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 522-83 chr14 80540856 80541155 + 3 NA intron (NM_152446, intron 21 of 24) intron (NM_152446, intron 21 of 24) -309948 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 330-18 chr1 72960502 72960699 + 3 NA Intergenic L1MEd|LINE|L1 -345570 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 653-29 chr11 121135133 121135583 + 3 NA intron (NM_005422, intron 9 of 22) intron (NM_005422, intron 9 of 22) 32692 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 406-109 chr17 5736138 5736308 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -36011 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 390-384 chr8 90964207 90964480 + 3 NA intron (NM_001363275, intron 4 of 5) L1MB5|LINE|L1 20734 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 667-104 chr7 71928589 71928974 + 3 NA intron (NM_001363460, intron 4 of 5) AluSz|SINE|Alu 408610 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 287 chr1 5494908 5495088 + 3 NA Intergenic Intergenic 367743 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 334-158 chr14 82053440 82053656 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -310410 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 451-240 chr8 124323367 124323624 + 3 NA intron (NM_194291, intron 3 of 6) intron (NM_194291, intron 3 of 6) 49204 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 543-205 chr5 93101299 93101566 + 3 NA Intergenic MamGypsy2-I|LTR|Gypsy 469911 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 369-449 chr9 114730169 114730432 + 3 NA Intergenic MER46C|DNA|TcMar-Tigger -48211 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 404-177 chr2 186331453 186331735 + 3 NA Intergenic L2c|LINE|L2 -154666 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 443-14 chr1 111825788 111826035 + 3 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 30994 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 559-31 chr12 10083176 10083426 + 3 NA intron (NM_001297748, intron 1 of 4) L1PBa|LINE|L1 15684 NM_001297749 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 466-93 chr16 35887503 35887766 + 3 NA Intergenic Intergenic 141082 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 402-368 chrUn_KI270442v1 69904 70165 + 3 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 413-217 chr4 60352337 60352589 + 3 NA Intergenic (ATATA)n|Simple_repeat|Simple_repeat -570156 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 799-32 chr2 178641033 178641467 + 3 NA exon (NM_133432, exon 49 of 192) exon (NM_133432, exon 49 of 192) 118059 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 484-169 chr3 44554750 44555036 + 3 NA promoter-TSS (NM_001288591) promoter-TSS (NM_001288591) -300 NM_001288592 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 559-138 chr4 116671109 116671361 + 3 NA Intergenic Intergenic 371510 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 503-247 chr6 110481055 110481225 + 3 NA Intergenic L1M4|LINE|L1 -4527 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 549-33 chr11 15486245 15486527 + 3 NA Intergenic Intergenic -157499 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 441-258 chr8 55544472 55544684 + 3 NA Intergenic FLAM_A|SINE|Alu -23600 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 345-494 chr7 40673882 40674100 + 3 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 305948 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 202-48 chr12 29577922 29578054 + 3 NA intron (NM_001367875, intron 10 of 19) intron (NM_001367875, intron 10 of 19) -78295 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 509-193 chr5 62156072 62156285 + 3 NA Intergenic Intergenic -149984 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 594-79 chr2 183572491 183572717 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 448161 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 708-7 chr10 41755364 41755760 + 3 NA Intergenic ALR/Alpha|Satellite|centr 612483 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 428-11 chr1 164910369 164910609 + 3 NA Intergenic L1ME4a|LINE|L1 -135848 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 557-103 chr2 113799903 113800158 + 3 NA Intergenic Intergenic -43388 NR_104470 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 258-281 chr4 31740299 31740455 + 3 NA Intergenic Intergenic 233833 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 667-5 chr1 152074039 152074456 + 3 NA Intergenic Intergenic 6677 NM_001310142 100131107 NM_001310142 LOC100131107 - putative UPF0607 protein ENSP00000383783 protein-coding 666-125 chrUn_GL000216v2 63218 63562 + 3 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 242-316 chr5 110226300 110226401 + 3 NA Intergenic L1MEh|LINE|L1 287565 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 526-110 chr19 34943661 34943912 + 3 NA exon (NM_001099437, exon 5 of 5) exon (NM_001099437, exon 5 of 5) 16883 NR_024018 90075 Hs.657402 NM_194325 ENSG00000168661 ZNF30 KOX28 zinc finger protein 30 protein-coding 572-130 chr4 125224489 125224738 + 3 NA Intergenic L3|LINE|CR1 -91799 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 512-169 chr3 85779774 85780044 + 3 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 48141 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 1310-5 chr6 151560629 151561426 + 3 NA intron (NM_025059, intron 5 of 10) L1PA17|LINE|L1 67010 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 558-80 chr18 22854490 22854752 + 3 NA Intergenic Intergenic -67784 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 846-31 chr3 43837266 43837875 + 3 NA Intergenic Intergenic -145976 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 605-117 chr7 136626667 136626927 + 3 NA Intergenic MIR|SINE|MIR -241855 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 385-14 chr1 199102177 199102385 + 3 NA Intergenic AluSz6|SINE|Alu -46317 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 707-43 chr19 5867810 5868182 + 3 NA intron (NM_002034, intron 1 of 1) intron (NM_002034, intron 1 of 1) 2544 NM_002034 2527 Hs.631843 NM_002034 ENSG00000130383 FUT5 FUC-TV fucosyltransferase 5 protein-coding 522-32 chr10 126781877 126782098 + 3 NA Intergenic Intergenic -111477 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 460-277 chr7 110314471 110314718 + 3 NA Intergenic L2a|LINE|L2 -354381 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 377-220 chr2 139125531 139125717 + 3 NA Intergenic Intergenic 228300 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 453-282 chr8 86259962 86260262 + 3 NA Intergenic Intergenic -29731 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 889-24 chr20 1411030 1411603 + 3 NA Intergenic L1M4|LINE|L1 -18144 NM_001199786 2280 Hs.471933 NM_000801 ENSG00000088832 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FKBP prolyl isomerase 1A protein-coding 450-319 chr9 73511132 73511406 + 3 NA Intergenic L1PA15|LINE|L1 359404 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 501-122 chr2 205443506 205443746 + 3 NA intron (NM_057177, intron 19 of 21) L2c|LINE|L2 -238874 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 429-231 chr5 44414564 44414715 + 3 NA TTS (NR_108034) TTS (NR_108034) -25219 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 498-31 chr10 64993919 64994116 + 3 NA Intergenic Intergenic -69499 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 494-130 chr2 79546704 79546998 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 23668 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 520-48 chr11 38153132 38153427 + 3 NA Intergenic L1MA4A|LINE|L1 214678 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 241-370 chr7 48897110 48897292 + 3 NA Intergenic Intergenic -27346 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 400-365 chr9 84845312 84845546 + 3 NA intron (NM_001018064, intron 12 of 17) intron (NM_001018064, intron 12 of 17) 139528 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 537-149 chr22 48846106 48846378 + 3 NA Intergenic L1MC|LINE|L1 -20528 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 421-213 chr4 58341759 58342009 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 194444 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 366-136 chr15 46072798 46072955 + 3 NA Intergenic Intergenic 367681 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 901-7 chr10 82081820 82082222 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 150899 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 299-240 chr2 189126474 189126628 + 3 NA intron (NM_000393, intron 1 of 53) intron (NM_000393, intron 1 of 53) 6560 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 758-5 chr1 215141687 215142193 + 3 NA intron (NM_001017424, intron 3 of 6) L1M6|LINE|L1 59203 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 370-96 chr11 100016542 100016712 + 3 NA intron (NM_001243270, intron 8 of 23) intron (NM_001243270, intron 8 of 23) 460482 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 674-96 chr7 107820897 107821258 + 3 NA Intergenic (T)n|Simple_repeat|Simple_repeat -17844 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 270-129 chr15 90687301 90687418 + 3 NA intron (NR_120372, intron 2 of 3) MER2|DNA|TcMar-Tigger 27125 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 433-281 chr8 87924165 87924334 + 3 NA Intergenic Intergenic -50234 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 674-61 chr3 99877128 99877506 + 3 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -1114 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 402-188 chr20 54509432 54509697 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 33971 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 400-119 chr16 63580218 63580430 + 3 NA Intergenic Intergenic 1541739 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 797-2 chr1 37362068 37362601 + 3 NA Intergenic AluSq|SINE|Alu 112109 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 391-189 chr2 180028365 180028526 + 3 NA Intergenic L1MA2|LINE|L1 -21148 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 884-47 chr8 122142137 122142642 + 3 NA Intergenic HERV16-int|LTR|ERVL 426255 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 419-57 chr11 104112818 104113051 + 3 NA intron (NM_025208, intron 1 of 6) L1PA13|LINE|L1 51213 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 294-288 chr3 34788696 34788887 + 3 NA Intergenic L1MC4|LINE|L1 605232 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 503-111 chr16 12565372 12565715 + 3 NA intron (NM_032167, intron 20 of 20) intron (NM_032167, intron 20 of 20) -154778 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 444-285 chr9 113054180 113054430 + 3 NA intron (NM_001282515, intron 1 of 3) L2a|LINE|L2 2419 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 376-57 chr10 85739555 85739780 + 3 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 161936 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 182-102 chr20 60577340 60577423 + 3 NA Intergenic Intergenic 12819 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 503-170 chr20 21583404 21583659 + 3 NA intron (NR_109880, intron 1 of 3) intron (NR_109880, intron 1 of 3) 13507 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 628-127 chr8 36290112 36290635 + 3 NA Intergenic Intergenic -494001 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 750-15 chr13 22773174 22773510 + 3 NA Intergenic Intergenic 124839 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 324-503 chr7 89149464 89149634 + 3 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -353812 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 320-588 chr9 30369985 30370154 + 3 NA Intergenic L1MA9|LINE|L1 38385 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 392-65 chr12 58760639 58760805 + 3 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 20994 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 801-24 chr18 29269631 29270007 + 3 NA Intergenic Intergenic -1029091 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 278-364 chr6 40138034 40138171 + 3 NA Intergenic Intergenic -203640 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 787-9 chr13 28830150 28830573 + 3 NA intron (NM_001366651, intron 1 of 14) L1MB7|LINE|L1 10022 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 660-7 chr1 209496745 209497065 + 3 NA Intergenic L1MA4|LINE|L1 64772 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 605-7 chr1 185958568 185958872 + 3 NA intron (NM_031935, intron 11 of 106) MIR|SINE|MIR 224329 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 698-26 chr16 5692302 5692692 + 3 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 60030 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 372-392 chr5 22823935 22824143 + 3 NA intron (NM_001364105, intron 1 of 15) L1MEd|LINE|L1 29305 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 344-303 chr3 22766013 22766228 + 3 NA Intergenic Intergenic 436458 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 672-12 chr10 118535076 118535504 + 3 NA Intergenic L1MC5|LINE|L1 60358 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 430-69 chr12 121073440 121073781 + 3 NA Intergenic L1MA9|LINE|L1 -34368 NM_001261825 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 400-145 chr19 51041061 51041231 + 3 NA Intergenic L1ME1|LINE|L1 -6144 NM_001370127 43849 Hs.411572 NM_019598 ENSG00000186474 KLK12 KLK-L5|KLKL5 kallikrein related peptidase 12 protein-coding 1031-15 chr8 63340778 63341231 + 3 NA Intergenic LTR26|LTR|ERV1 -124845 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 581-37 chr13 70141628 70141875 + 3 NA Intergenic Intergenic -33258 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 453-129 chr2 155438970 155439134 + 3 NA Intergenic L1PA16|LINE|L1 740357 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 356-327 chr3 82506688 82506939 + 3 NA Intergenic Intergenic 520671 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 380-320 chr5 145585504 145585683 + 3 NA Intergenic MIRb|SINE|MIR 249749 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 694-121 chr7 49267785 49268214 + 3 NA Intergenic Intergenic 343452 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 681-27 chr17 27908667 27909020 + 3 NA Intergenic MER41B|LTR|ERV1 -15478 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 465-235 chr5 101823879 101824103 + 3 NA Intergenic LTR40a|LTR|ERVL 472293 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 283-83 chr11 77908703 77908901 + 3 NA intron (NM_033547, intron 15 of 22) L1ME4a|LINE|L1 67664 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 320-116 chr12 33117825 33117944 + 3 NA Intergenic LTR85c|LTR|Gypsy? -221038 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 482-7 chr1 73059691 73059922 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -246364 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 616-77 chr2 49537418 49537781 + 3 NA Intergenic L1MA3|LINE|L1 -383072 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 257-304 chr4 92537613 92537735 + 3 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 233275 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 541-175 chr5 3249254 3249446 + 3 NA Intergenic L1MC1|LINE|L1 71515 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 422-257 chr6 45485655 45485912 + 3 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 63508 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 845-31 chr5 155318186 155318607 + 3 NA Intergenic L1ME3D|LINE|L1 304641 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 569-101 chr2 139916719 139916949 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 669851 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 362-222 chr2 108237438 108237586 + 3 NA Intergenic Intergenic -2456 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 359-317 chr3 70774915 70775111 + 3 NA Intergenic MER3|DNA|hAT-Charlie 289911 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 779-21 chr14 84763270 84763686 + 3 NA Intergenic Intergenic -508454 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 441-248 chr7 55800654 55800912 + 3 NA intron (NM_207366, intron 9 of 9) L1MA3|LINE|L1 61969 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 806-12 chr12 92395835 92396276 + 3 NA Intergenic Intergenic -25476 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 1044-20 chr8 131377547 131378240 + 3 NA Intergenic MLT2B3|LTR|ERVL -336984 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 491-23 chr10 87607689 87607991 + 3 NA Intergenic L1PA15|LINE|L1 -52038 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 389-398 chrX 94965592 94965743 + 3 NA Intergenic MER50-int|LTR|ERV1 97559 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 541-120 chr2 82117816 82118079 + 3 NA Intergenic Intergenic -651001 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 903-14 chr14 70869069 70869730 + 3 NA Intergenic MER41-int|LTR|ERV1 -38060 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 749-92 chr8 83205701 83206196 + 3 NA Intergenic Intergenic -197810 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 501-17 chr1 238544934 238545199 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR -59049 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 767-47 chr6 164987458 164987940 + 3 NA Intergenic L1MC3|LINE|L1 -165636 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 433-47 chr11 71380848 71381063 + 3 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 42399 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 446-86 chr12 118908427 118908658 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -72999 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 533-255 chrX 125323390 125323683 + 3 NA intron (NM_001195272, intron 1 of 1) intron (NM_001195272, intron 1 of 1) 3665 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 575-113 chr3 42344194 42344496 + 3 NA Intergenic Intergenic 66265 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 811-5 chr10 81967588 81968186 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 90200 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 488-37 chr10 125953003 125953319 + 3 NA intron (NM_001363549, intron 1 of 10) MER5A|DNA|hAT-Charlie 20112 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 468-43 chr11 6521413 6521620 + 3 NA TTS (NM_173589) TTS (NM_173589) 24220 NM_144666 144132 Hs.720080 NM_144666 ENSG00000179532 DNHD1 C11orf47|CCDC35|DHCD1|DNHD1L dynein heavy chain domain 1 protein-coding 550-155 chr3 189034089 189034383 + 3 NA Intergenic L1MEh|LINE|L1 -86597 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 491-207 chr5 41037761 41037977 + 3 NA intron (NM_173489, intron 21 of 41) intron (NM_173489, intron 21 of 41) 33473 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 1078-16 chr7 68915236 68915908 + 3 NA Intergenic L2a|LINE|L2 682052 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 424-114 chr18 77245863 77246191 + 3 NA Intergenic L1MEd|LINE|L1 -3821 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 553-137 chr2 186386048 186386388 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -100042 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 385-93 chr14 37961180 37961338 + 3 NA Intergenic Intergenic -59135 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 394-99 chr14 31449755 31449999 + 3 NA intron (NM_080664, intron 2 of 2) intron (NM_080664, intron 2 of 2) 7629 NM_080664 112487 Hs.116014 NM_080664 ENSG00000129480 DTD2 ATD|C14orf126 D-aminoacyl-tRNA deacylase 2 protein-coding 632-95 chr5 41477302 41477731 + 3 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 33085 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 455-57 chr12 29614492 29614673 + 3 NA intron (NM_001367875, intron 8 of 19) intron (NM_001367875, intron 8 of 19) -114889 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 790-37 chr4 44583840 44584387 + 3 NA Intergenic L1PB4|LINE|L1 67528 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 635-25 chr13 103235295 103235551 + 3 NA Intergenic MLT2B3|LTR|ERVL -169006 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 433-241 chr6 39636102 39636311 + 3 NA intron (NM_001289020, intron 4 of 21) intron (NM_001289020, intron 4 of 21) 89202 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 497-254 chr7 7273048 7273224 + 3 NA intron (NR_108073, intron 3 of 3) intron (NR_108073, intron 3 of 3) 17982 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 330-274 chr2 88045486 88045635 + 3 NA intron (NM_001304526, intron 1 of 3) L1ME1|LINE|L1 10223 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 848-13 chr15 69006552 69007027 + 3 NA intron (NR_033672, intron 2 of 16) MER57A-int|LTR|ERV1 -7906 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 353-161 chr15 83674226 83674386 + 3 NA intron (NM_207517, intron 2 of 29) L1MDa|LINE|L1 20183 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 531-195 chr5 37965080 37965419 + 3 NA Intergenic Intergenic 16758 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 555-65 chr16 24168021 24168469 + 3 NA intron (NM_002738, intron 10 of 16) MIRb|SINE|MIR -34871 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 511-63 chr14 46115067 46115245 + 3 NA intron (NR_102702, intron 1 of 3) L1MA3|LINE|L1 50997 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 644-6 chr10 5401539 5401909 + 3 NA intron (NM_024803, intron 1 of 3) intron (NM_024803, intron 1 of 3) 3104 NM_024803 79861 Hs.163079 NM_024803 ENSG00000178462 TUBAL3 - tubulin alpha like 3 protein-coding 530-135 chr2 116202857 116203069 + 3 NA Intergenic L1PA13|LINE|L1 859148 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 466-191 chr5 3075906 3076112 + 3 NA Intergenic Intergenic -101826 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 562-216 chr8 84977411 84977675 + 3 NA Intergenic Intergenic -129695 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 372-479 chr8 64297440 64297637 + 3 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 71020 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 361-41 chr10 52330409 52330619 + 3 NA Intergenic Intergenic 16233 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 794-55 chrX 80356403 80356768 + 3 NA intron (NM_001170574, intron 3 of 4) intron (NM_001170574, intron 3 of 4) 21081 NM_001170574 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 468-304 chr7 93504301 93504512 + 3 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) -20387 NR_030164 574442 NR_030164 ENSG00000207656 MIR489 MIRN489|hsa-mir-489|mir-489 microRNA 489 ncRNA 632-57 chr2 134555103 134555483 + 3 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 163707 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 1103-7 chr19 58120576 58121106 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -2415 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 488-31 chr10 86303167 86303379 + 3 NA intron (NM_017551, intron 2 of 15) L1ME3Cz|LINE|L1 -38485 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 375-108 chr12 130588161 130588441 + 3 NA intron (NM_001351226, intron 2 of 21) MER113|DNA|hAT-Charlie 40155 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 290-405 chr7 10299616 10299738 + 3 NA Intergenic L1MEc|LINE|L1 -402999 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 473-35 chr10 85587751 85588080 + 3 NA intron (NR_038986, intron 2 of 2) L1MCa|LINE|L1 10184 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 589-95 chr3 136765001 136765269 + 3 NA Intergenic AluSz|SINE|Alu -12757 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 705-8 chr10 65280383 65280715 + 3 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -290876 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 601-153 chr8 140017008 140017324 + 3 NA intron (NM_001160372, intron 18 of 22) L1ME2|LINE|L1 83369 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 479-48 chr13 54103966 54104215 + 3 NA Intergenic Intergenic 28781 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 761-77 chr9 30390999 30391483 + 3 NA intron (NR_046204, intron 1 of 2) L1PA15|LINE|L1 17213 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 502-59 chr11 110076083 110076402 + 3 NA Intergenic Intergenic -17150 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 478-214 chr4 97367696 97367896 + 3 NA intron (NR_102713, intron 1 of 5) MLT1E2|LTR|ERVL-MaLR 870 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 645-92 chr5 12509391 12509639 + 3 NA Intergenic L1PA11|LINE|L1 -65342 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 676-40 chr15 91729235 91729632 + 3 NA Intergenic L1MEg|LINE|L1 -124275 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 294-103 chr14 21892614 21892825 + 3 NA Intergenic Intergenic -221702 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 511-82 chr15 99969871 99970077 + 3 NA Intergenic Intergenic 162951 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 350-445 chr6 97741696 97741847 + 3 NA Intergenic L1ME2|LINE|L1 -282760 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 652-19 chr10 52535455 52535769 + 3 NA Intergenic Intergenic -65079 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 443-88 chr14 47482982 47483266 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -139878 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 605-31 chr15 100197724 100197984 + 3 NA intron (NM_139057, intron 8 of 21) L1PA7|LINE|L1 144121 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 332-547 chr8 125546621 125546896 + 3 NA Intergenic Intergenic 114549 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 445-18 chr10 16132020 16132180 + 3 NA Intergenic Intergenic -271567 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 544-94 chr17 74293018 74293399 + 3 NA intron (NM_023036, intron 6 of 13) L1M4|LINE|L1 18974 NR_148379 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 443-240 chr5 37646162 37646432 + 3 NA intron (NM_001345998, intron 10 of 17) L1MA3|LINE|L1 188525 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 504-244 chr7 94180082 94180461 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -175916 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 1099-12 chr2 21018094 21018640 + 3 NA intron (NM_000384, intron 20 of 28) L2a|LINE|L2 25706 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 272-477 chr9 86208313 86208504 + 3 NA Intergenic Intergenic 47625 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 494-121 chr2 37801370 37801675 + 3 NA Intergenic Intergenic 28189 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 546-69 chr14 46034796 46035009 + 3 NA Intergenic Intergenic -29257 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 828-52 chr9 71588857 71589191 + 3 NA Intergenic Intergenic -142053 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 646-111 chr6 9852126 9852491 + 3 NA Intergenic L1PA15-16|LINE|L1 -552194 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 1260-3 chr19 43974859 43975468 + 3 NA Intergenic L1PA11|LINE|L1 -9007 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 914-23 chr3 113463184 113463692 + 3 NA intron (NM_001331078, intron 11 of 17) L1MB7|LINE|L1 -21924 NM_018338 55779 Hs.584936 NM_018338 ENSG00000206530 CFAP44 SPGF20|WDR52 cilia and flagella associated protein 44 protein-coding 351-56 chr10 132052290 132052468 + 3 NA Intergenic L1MEd|LINE|L1 -13567 NM_001323088 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 281-395 chr6 103132218 103132344 + 3 NA Intergenic Intergenic 1727265 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 269-195 chr2 64698762 64698920 + 3 NA Intergenic Intergenic -44928 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 226-91 chr14 62566758 62566864 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -426838 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 679-71 chr3 41665735 41666138 + 3 NA intron (NR_136342, intron 27 of 34) MER77|LTR|ERVL 296167 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 385-154 chr19 30182144 30182363 + 3 NA Intergenic L1MEf|LINE|L1 -190131 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 591-125 chr5 20073046 20073296 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -84971 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 1006-18 chr22 39194499 39195007 + 3 NA Intergenic L1MD1|LINE|L1 -42073 NM_001346743 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 547-124 chr21 14250479 14250719 + 3 NA Intergenic Intergenic -23200 NR_003087 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 423-298 chr8 114371797 114372034 + 3 NA Intergenic Intergenic -934976 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 609-96 chr5 36066698 36067088 + 3 NA promoter-TSS (NM_174914) promoter-TSS (NM_174914) -11 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 510-263 chr7 93091260 93091503 + 3 NA Intergenic L1M1|LINE|L1 26598 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 596-83 chr18 60733530 60733841 + 3 NA Intergenic Intergenic -360910 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 436-111 chr18 6831904 6832107 + 3 NA intron (NM_001366230, intron 2 of 17) L1MC4|LINE|L1 -2480 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 825-27 chr20 2018214 2018642 + 3 NA Intergenic L1ME1|LINE|L1 -24143 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 1098-12 chrX 54724702 54725397 + 3 NA Intergenic L1PA6|LINE|L1 73206 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 674-72 chr4 166132068 166132394 + 3 NA Intergenic L1PA10|LINE|L1 258994 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 532-32 chr11 48728166 48728371 + 3 NA Intergenic ALR/Alpha|Satellite|centr 239475 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 403-26 chr10 39238278 39238458 + 3 NA Intergenic ALR/Alpha|Satellite|centr 541772 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 565-49 chr15 62208263 62208652 + 3 NA Intergenic MER4B-int|LTR|ERV1 -5139 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 572-19 chr10 108257257 108257591 + 3 NA Intergenic Intergenic -188131 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 577-69 chr16 5828189 5828532 + 3 NA Intergenic Intergenic -190664 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 549-154 chr4 111203220 111203558 + 3 NA Intergenic MIR|SINE|MIR -342742 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 745-18 chr17 51593885 51594279 + 3 NA Intergenic MamRep1894|DNA|hAT 158655 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 267-239 chr21 22829234 22829375 + 3 NA Intergenic Intergenic -249980 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 594-46 chr14 81010542 81010815 + 3 NA intron (NM_001142626, intron 1 of 8) L1ME3Cz|LINE|L1 55057 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 540-150 chr3 133221765 133222077 + 3 NA intron (NM_001282865, intron 1 of 3) L1MA8|LINE|L1 35200 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 665-54 chr20 43886846 43887312 + 3 NA Intergenic AluSx1|SINE|Alu -7639 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 624-77 chr21 14640494 14640837 + 3 NA intron (NM_001256579, intron 1 of 6) intron (NM_001256579, intron 1 of 6) 2442 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 710-79 chr5 107258791 107259153 + 3 NA Intergenic AluSx|SINE|Alu -247958 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 505-182 chr21 21834359 21834531 + 3 NA Intergenic L1MEc|LINE|L1 87460 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 397-228 chr4 89439888 89440092 + 3 NA Intergenic Intergenic -132190 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 853-10 chr16 11217111 11217797 + 3 NA Intergenic AluJo|SINE|Alu 38728 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 541-178 chr5 5511561 5511943 + 3 NA Intergenic Intergenic 89075 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 1059-15 chr8 124915149 124915870 + 3 NA Intergenic LTR9A1|LTR|ERV1 -26499 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 534-71 chr14 48417065 48417448 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -622242 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 1002-20 chr7 37367346 37367887 + 3 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) -13948 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 443-233 chr4 181893565 181893787 + 3 NA Intergenic Intergenic -63703 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 534-90 chr17 71340326 71340621 + 3 NA Intergenic Intergenic -138294 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 496-112 chr17 52080124 52080308 + 3 NA intron (NM_001082533, intron 2 of 9) AluY|SINE|Alu 78498 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 414-32 chr10 101175322 101175484 + 3 NA promoter-TSS (NR_120620) promoter-TSS (NR_120620) -919 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 542-123 chr20 55315737 55315953 + 3 NA Intergenic Intergenic -107198 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 515-233 chr6 57135225 57135411 + 3 NA intron (NM_015555, intron 7 of 13) intron (NM_015555, intron 7 of 13) 36895 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 566-79 chr19 36508336 36508689 + 3 NA Intergenic MER50B|LTR|ERV1 18885 NR_036504 728752 Hs.729762 NR_036504 ENSG00000267309 LOC728752 - uncharacterized LOC728752 ncRNA 523-162 chr21 23942164 23942367 + 3 NA Intergenic MER4D1|LTR|ERV1 379112 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 387-39 chr10 57483818 57483990 + 3 NA Intergenic L2a|LINE|L2 -179345 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 870-40 chr8 141881871 141882557 + 3 NA Intergenic Intergenic -95901 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 565-108 chr21 29711028 29711350 + 3 NA intron (NM_000830, intron 1 of 16) Tigger3a|DNA|TcMar-Tigger -36986 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 1264-5 chr22 27340036 27340832 + 3 NA Intergenic Intergenic 29783 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 618-10 chr1 189403660 189404023 + 3 NA Intergenic Intergenic 1072169 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 390-385 chr8 92175104 92175273 + 3 NA Intergenic L1MEi|LINE|L1 -71803 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 683-35 chr19 56678754 56679122 + 3 NA Intergenic AluSp|SINE|Alu -7181 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 552-204 chr8 4218161 4218483 + 3 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 776592 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 890-5 chr11 50496213 50496596 + 3 NA Intergenic ALR/Alpha|Satellite|centr 87257 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 754-17 chr14 47449049 47449376 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -105966 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 268-227 chr21 24109567 24109696 + 3 NA Intergenic Intergenic 211746 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 441-213 chr5 155396594 155396854 + 3 NA Intergenic Intergenic 382969 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 1164-4 chr2 18062013 18062647 + 3 NA Intergenic Intergenic 183663 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 217-144 chr16 60253212 60253358 + 3 NA Intergenic LTR49-int|LTR|ERV1 106508 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 460-191 chr3 40913439 40913687 + 3 NA Intergenic Intergenic -285942 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 512-132 chr2 128706143 128706381 + 3 NA Intergenic L1M4b|LINE|L1 -158338 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 595-125 chr4 97802909 97803163 + 3 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 340440 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 290-179 chr18 6476874 6477091 + 3 NA Intergenic LTR16B|LTR|ERVL -34434 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 482-42 chr10 111473195 111473462 + 3 NA Intergenic AluJr4|SINE|Alu 359037 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 658-93 chr4 106394896 106395195 + 3 NA Intergenic L1MB2|LINE|L1 -27610 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 600-89 chr4 38439739 38440189 + 3 NA intron (NR_110951, intron 6 of 7) intron (NR_110951, intron 6 of 7) -69803 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 691-9 chr10 113207071 113207458 + 3 NA Intergenic L1MA2|LINE|L1 77993 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 596 chr1 56485087 56485456 + 3 NA Intergenic L1PA16|LINE|L1 70308 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 497-10 chr1 179218052 179218410 + 3 NA intron (NM_007314, intron 1 of 11) intron (NM_007314, intron 1 of 11) 11446 NM_007314 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 738-16 chr12 118999511 118999897 + 3 NA intron (NM_194286, intron 1 of 12) MIRb|SINE|MIR 18163 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 522-81 chr14 66305455 66305732 + 3 NA Intergenic Intergenic -180778 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 287-297 chr4 174075189 174075339 + 3 NA Intergenic L1MEg|LINE|L1 145134 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 492-80 chr13 97096916 97097159 + 3 NA Intergenic Intergenic 82585 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 705-22 chr12 43382137 43382619 + 3 NA intron (NM_025003, intron 31 of 38) L1MB7|LINE|L1 169825 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 440-162 chr3 65314050 65314305 + 3 NA Intergenic Intergenic -579639 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 275-104 chr14 37852388 37852508 + 3 NA Intergenic MIR|SINE|MIR 49676 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 697-26 chr15 49385527 49385911 + 3 NA intron (NM_152647, intron 11 of 15) L1PB3|LINE|L1 -37523 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 255-367 chr6 151327116 151327262 + 3 NA intron (NM_144497, intron 1 of 2) intron (NM_144497, intron 1 of 2) 1658 NM_144497 9590 Hs.371240 NM_005100 ENSG00000131016 AKAP12 AKAP250|SSeCKS A-kinase anchoring protein 12 protein-coding 335-264 chr2 136501857 136502087 + 3 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -263573 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 625-2 chr1 31467204 31467543 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 -32712 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LDC1P LINC01225 leucine decarboxylase 1, pseudogene pseudo 212-310 chr7 89000937 89001016 + 3 NA intron (NM_181646, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat -205239 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 415-38 chr10 113607675 113607905 + 3 NA intron (NM_001322945, intron 31 of 40) intron (NM_001322945, intron 31 of 40) 54737 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 438-95 chr17 73921885 73922205 + 3 NA Intergenic Tigger4b|DNA|TcMar-Tigger -93508 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 1439-3 chr20 41529380 41530344 + 3 NA intron (NM_032221, intron 3 of 36) intron (NM_032221, intron 3 of 36) 88515 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 811-32 chr3 74793630 74794111 + 3 NA Intergenic AluSz|SINE|Alu -272730 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 492-263 chr8 104911164 104911404 + 3 NA Intergenic L1PA8A|LINE|L1 -322260 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 860-22 chr18 403700 404114 + 3 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 96794 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 486-165 chr2 240422188 240422497 + 3 NA Intergenic L1ME4b|LINE|L1 -13321 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 705-79 chr5 60085451 60085865 + 3 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -191932 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 572-147 chr5 173539951 173540343 + 3 NA Intergenic MIR|SINE|MIR -39487 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 564-166 chr5 155790459 155790749 + 3 NA Intergenic Intergenic -536153 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 781-50 chr5 37833030 37833600 + 3 NA intron (NM_001278098, intron 1 of 2) intron (NM_001278098, intron 1 of 2) 1507 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 523-16 chr1 200455092 200455418 + 3 NA Intergenic L2c|LINE|L2 -45219 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 448-7 chr1 88488128 88488309 + 3 NA Intergenic Intergenic -195926 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 574-191 chr8 139733377 139733643 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -30387 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 656-137 chr9 35506263 35506582 + 3 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) 16311 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 422-160 chr2 184268101 184268300 + 3 NA Intergenic Intergenic -110775 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 564-76 chr17 63508770 63509035 + 3 NA Intergenic MIRc|SINE|MIR -14456 NM_001278920 81033 Hs.591177 NM_030779 ENSG00000173826 KCNH6 ERG-2|ERG2|HERG2|Kv11.2|hERG-2 potassium voltage-gated channel subfamily H member 6 protein-coding 848-47 chr8 129798865 129799302 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -12459 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 459-187 chr3 68834225 68834416 + 3 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 98227 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 542-150 chr4 69587405 69587589 + 3 NA TTS (NM_006798) TTS (NM_006798) 52145 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 813-14 chr16 75022888 75023260 + 3 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 24050 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 585-116 chr4 147263427 147263697 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 81155 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 829-27 chr3 147037353 147037777 + 3 NA Intergenic L1MCa|LINE|L1 115642 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 638-126 chr5 110168292 110168596 + 3 NA Intergenic Intergenic 285262 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 717-17 chr10 83443984 83444412 + 3 NA Intergenic LTR48B|LTR|ERV1 232891 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 655-41 chr15 60911448 60911856 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 230083 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 543-132 chr2 137589145 137589489 + 3 NA intron (NM_001316349, intron 17 of 27) intron (NM_001316349, intron 17 of 27) 338615 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 740-42 chr2 114244981 114245426 + 3 NA Intergenic Intergenic -197438 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 498-25 chr10 39362876 39363046 + 3 NA Intergenic ALR/Alpha|Satellite|centr 666365 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 366-392 chr6 156222129 156222324 + 3 NA Intergenic L1MA2|LINE|L1 -156524 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 394-138 chr17 71140254 71140486 + 3 NA intron (NR_104152, intron 2 of 3) (TA)n|Simple_repeat|Simple_repeat 61809 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 408-259 chr5 15745448 15745672 + 3 NA intron (NM_001278317, intron 2 of 3) L2a|LINE|L2 -130558 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 267-232 chr20 57603337 57603469 + 3 NA TTS (NM_030776) TTS (NM_030776) 17023 NM_001160418 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 554-186 chr6 154718701 154719012 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -14522 NM_001286199 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 547-116 chr2 220408120 220408444 + 3 NA Intergenic L1PREC2|LINE|L1 -501717 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 437-159 chr20 45709027 45709306 + 3 NA TTS (NM_172005) TTS (NM_172005) -3986 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 415-53 chr12 9129901 9130086 + 3 NA Intergenic L1MB2|LINE|L1 -13764 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 617-14 chr10 71488518 71488810 + 3 NA intron (NM_052836, intron 3 of 12) MER102b|DNA|hAT-Charlie 23256 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 454-218 chr3 164191606 164191903 + 3 NA Intergenic HERV16-int|LTR|ERVL -20198 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 767-17 chr16 87239253 87239680 + 3 NA Intergenic Intergenic 27351 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 572-154 chr6 61503536 61503881 + 3 NA Intergenic ALR/Alpha|Satellite|centr -70422 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 670-49 chr18 13931478 13931870 + 3 NA Intergenic Intergenic -15967 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 423-301 chr8 124826511 124826739 + 3 NA Intergenic MIRb|SINE|MIR -4567 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 454-73 chr12 67521168 67521422 + 3 NA intron (NR_103861, intron 1 of 2) intron (NR_103861, intron 1 of 2) 1213 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LINC02408 - long intergenic non-protein coding RNA 2408 ncRNA 1570-4 chr8 137101891 137102887 + 3 NA Intergenic Intergenic 311199 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 601-143 chr8 17643156 17643487 + 3 NA TTS (NR_156437) TTS (NR_156437) 33180 NM_001330470 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 1081-15 chr8 75156509 75157198 + 3 NA Intergenic L1MA6|LINE|L1 121628 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 414-245 chr4 116582184 116582409 + 3 NA Intergenic Intergenic 282571 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 273-139 chr14 78577293 78577400 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 173627 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 473-13 chr1 114158749 114159006 + 3 NA Intergenic MIRc|SINE|MIR -5008 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 572-174 chr8 118756119 118756424 + 3 NA Intergenic Intergenic -134308 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 306-482 chr7 96080531 96080707 + 3 NA intron (NM_001278422, intron 15 of 15) intron (NM_001278422, intron 15 of 15) 139137 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 737-44 chr2 99091090 99091522 + 3 NA intron (NR_146001, intron 9 of 18) L1PB1|LINE|L1 49874 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 244-241 chr3 163350844 163350993 + 3 NA Intergenic Intergenic -47617 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 437-147 chr2 154271745 154272000 + 3 NA intron (NM_052917, intron 8 of 12) intron (NM_052917, intron 8 of 12) 185566 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 488-198 chr4 136964981 136965166 + 3 NA intron (NR_149105, intron 2 of 3) intron (NR_149105, intron 2 of 3) -228683 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 623-118 chr6 152746504 152746790 + 3 NA Intergenic Intergenic -4150 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 1122-10 chr2 101531281 101531760 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -56408 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 427-77 chr14 98756061 98756342 + 3 NA Intergenic L1ME4a|LINE|L1 44588 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 684-23 chr11 132013159 132013549 + 3 NA intron (NR_147849, intron 2 of 6) L2|LINE|L2 102536 NM_001144059 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 243-439 chr8 51004310 51004471 + 3 NA Intergenic L1MC2|LINE|L1 805055 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 523-248 chr6 124169468 124169795 + 3 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -113374 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 481-130 chr19 58108844 58109083 + 3 NA non-coding (NR_027135, exon 2 of 2) non-coding (NR_027135, exon 2 of 2) 9463 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 609-149 chrX 95333979 95334406 + 3 NA Intergenic L1PBa|LINE|L1 -270966 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 1090-4 chr14 55122080 55122626 + 3 NA Intergenic Intergenic -6899 NM_001357678 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 375-262 chr3 51757307 51757500 + 3 NA Intergenic L1M4|LINE|L1 21834 NM_001143833 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 238-411 chr9 24537908 24537998 + 3 NA Intergenic Intergenic 7723 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 529-115 chr2 150684607 150684798 + 3 NA Intergenic Intergenic 55805 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 957-31 chr8 101463522 101464132 + 3 NA Intergenic Intergenic -28612 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 948-11 chr14 44106160 44106561 + 3 NA Intergenic L1MA9|LINE|L1 400923 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 355-396 chr5 40468663 40468810 + 3 NA Intergenic Intergenic -211179 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 471-167 chr3 73665353 73665576 + 3 NA Intergenic Intergenic -40523 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 549-144 chr3 102562353 102562681 + 3 NA Intergenic L1M3de|LINE|L1 127502 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 564-181 chr6 167255200 167255417 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 27008 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 489-128 chr2 36095257 36095485 + 3 NA Intergenic L1PA8|LINE|L1 260199 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 334-233 chr19 28955367 28955546 + 3 NA Intergenic HAL1ME|LINE|L1 -9675 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 1021-13 chr5 123060362 123060917 + 3 NA Intergenic HAL1|LINE|L1 -23914 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 365-214 chr2 176515583 176515792 + 3 NA Intergenic L1ME1|LINE|L1 85365 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 740-21 chr11 122382726 122383140 + 3 NA intron (NR_137179, intron 1 of 4) L1MA2|LINE|L1 -14945 NR_137192 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 546-182 chr5 14585942 14586246 + 3 NA intron (NM_019018, intron 1 of 7) intron (NM_019018, intron 1 of 7) 4302 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 718-70 chr5 36485021 36485494 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -121098 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 648-114 chr5 109586518 109586953 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie -102631 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 510-295 chrX 69997738 69997925 + 3 NA intron (NM_001005609, intron 2 of 7) THE1A-int|LTR|ERVL-MaLR -25026 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 694-97 chr4 135972236 135972663 + 3 NA Intergenic Intergenic -58769 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 589-172 chrX 85619039 85619307 + 3 NA Intergenic L1PA13|LINE|L1 -216607 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 195-172 chr4 115897188 115897299 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -402482 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 585-167 chr9 17861012 17861252 + 3 NA Intergenic Intergenic 282066 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 510-95 chr16 25530040 25530252 + 3 NA Intergenic Intergenic -161813 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 616-16 chr10 50625617 50625908 + 3 NA intron (NR_126411, intron 1 of 3) intron (NR_126411, intron 1 of 3) 811 NR_126411 104355295 Hs.450493 NR_126411 SGMS1-AS1 - SGMS1 antisense RNA 1 ncRNA 515-61 chr13 96475856 96476084 + 3 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 48741 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 657-89 chr7 31566678 31567142 + 3 NA intron (NM_194300, intron 3 of 12) intron (NM_194300, intron 3 of 12) 13908 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 529-109 chr2 114862970 114863188 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -29531 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 1011 chr1 34512205 34512760 + 3 NA Intergenic L1ME1|LINE|L1 157212 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 400-241 chr4 35305889 35306054 + 3 NA Intergenic Intergenic 937968 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 591-6 chr1 65996945 65997296 + 3 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 4504 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 387-373 chr8 126301370 126301561 + 3 NA Intergenic MIR|SINE|MIR -24030 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 502-83 chr14 39544023 39544199 + 3 NA Intergenic L1PA16|LINE|L1 -111611 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 478-11 chr1 183062037 183062241 + 3 NA intron (NM_002293, intron 1 of 27) intron (NM_002293, intron 1 of 27) 38719 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 852-41 chr5 39869868 39870342 + 3 NA Intergenic L1PA16|LINE|L1 -182186 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 704-72 chr5 150913282 150913717 + 3 NA Intergenic L1M3de|LINE|L1 -8516 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 502-123 chr19 4425096 4425280 + 3 NA intron (NM_005483, intron 7 of 14) intron (NM_005483, intron 7 of 14) -20790 NR_039901 100616371 NR_039901 ENSG00000266437 MIR4746 mir-4746 microRNA 4746 ncRNA 908-33 chr4 130953847 130954337 + 3 NA Intergenic Intergenic 577731 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 488-291 chr9 38252446 38252757 + 3 NA Intergenic Intergenic -140101 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 524-265 chr8 117486850 117487172 + 3 NA Intergenic L1PA10|LINE|L1 -33702 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 472-141 chr19 32254785 32254951 + 3 NA Intergenic Intergenic -90742 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 611-151 chr8 120023190 120023584 + 3 NA intron (NM_022783, intron 8 of 8) AluSx|SINE|Alu -101715 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 853-37 chr7 15276287 15276820 + 3 NA intron (NM_001004320, intron 12 of 12) L1PA5|LINE|L1 285462 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 237-361 chr7 92519579 92519668 + 3 NA intron (NM_001282677, intron 2 of 22) intron (NM_001282677, intron 2 of 22) 8897 NM_001282677 5189 Hs.164682 NM_000466 ENSG00000127980 PEX1 HMLR1|PBD1A|PBD1B|ZWS|ZWS1 peroxisomal biogenesis factor 1 protein-coding 349-180 chr15 56037407 56037605 + 3 NA Intergenic L1MC5a|LINE|L1 -43894 NM_006154 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 631-40 chr14 72416248 72416610 + 3 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -100391 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 513-257 chr7 8667969 8668284 + 3 NA intron (NM_152745, intron 2 of 2) L1M3e|LINE|L1 234517 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 987-5 chr2 13249428 13249822 + 3 NA Intergenic L1ME1|LINE|L1 -242612 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 518-199 chr4 47740362 47740754 + 3 NA intron (NM_006587, intron 5 of 21) L1M4|LINE|L1 87889 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 711-16 chr12 84566099 84566431 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 346534 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 544-90 chr17 26885716 26885936 + 3 NA Intergenic ALR/Alpha|Satellite|centr 203415 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 358-143 chr16 27034735 27034898 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -32111 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 433-163 chr22 33605479 33605668 + 3 NA intron (NM_133642, intron 4 of 14) intron (NM_133642, intron 4 of 14) 99347 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 583-136 chr5 30603795 30604183 + 3 NA Intergenic Intergenic -589697 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 494-177 chr3 88027235 88027505 + 3 NA Intergenic Intergenic 31626 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 683-30 chr17 71345392 71345756 + 3 NA Intergenic MSTD-int|LTR|ERVL-MaLR -143395 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 513-242 chr6 53213505 53213800 + 3 NA Intergenic Intergenic -63341 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 671-26 chr13 58539998 58540340 + 3 NA Intergenic Intergenic -307052 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 362-305 chr4 63581715 63581976 + 3 NA Intergenic LOR1a|LTR|ERV1 827605 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 314-35 chr1 182580179 182580344 + 3 NA intron (NM_021133, intron 5 of 6) L2c|LINE|L2 8995 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 452-105 chr17 16648886 16649147 + 3 NA intron (NM_020787, intron 2 of 5) intron (NM_020787, intron 2 of 5) 4834 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 380-270 chr4 19340532 19340708 + 3 NA Intergenic L1P3|LINE|L1 -911285 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 500-202 chr4 58843346 58843518 + 3 NA Intergenic Intergenic -140850 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 988-6 chr12 131409694 131410121 + 3 NA Intergenic (CATC)n|Simple_repeat|Simple_repeat 62437 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 1183-5 chr2 234665629 234666121 + 3 NA Intergenic AluJo|SINE|Alu -16793 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 520-68 chr12 58273874 58274123 + 3 NA Intergenic Intergenic 186106 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 492-123 chr2 23132655 23132981 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -252361 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 220-49 chr10 72769796 72769927 + 3 NA intron (NR_073062, intron 3 of 9) L1MB8|LINE|L1 48832 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 347-421 chr5 164854146 164854291 + 3 NA Intergenic Intergenic 383939 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 386-239 chr3 78992636 78992790 + 3 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 26746 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 491-115 chr2 58311650 58311920 + 3 NA Intergenic L1ME2|LINE|L1 35908 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 739-32 chr2 5888351 5888811 + 3 NA Intergenic L1MEc|LINE|L1 -44106 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 491-134 chr2 187963215 187963466 + 3 NA Intergenic Intergenic 324351 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 583-95 chr2 176079070 176079347 + 3 NA TTS (NM_001080458) TTS (NM_001080458) 4754 NM_001080458 344191 Hs.452341 NM_001080458 ENSG00000174279 EVX2 EVX-2 even-skipped homeobox 2 protein-coding 465-228 chr5 71914352 71914616 + 3 NA Intergenic MER121|DNA|hAT? -192991 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 789-27 chr21 10721539 10722106 + 3 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 200308 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 457-260 chr8 116390357 116390637 + 3 NA Intergenic Intergenic -65438 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 673-101 chr5 104714025 104714385 + 3 NA Intergenic Intergenic -385269 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 897-38 chr8 46892310 46892733 + 3 NA Intergenic Intergenic 51635 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 432-291 chr8 83298414 83298614 + 3 NA Intergenic LTR58|LTR|ERV1 -105244 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 462-185 chr3 109664436 109664669 + 3 NA Intergenic Intergenic 61724 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 1065-3 chr11 8137610 8138340 + 3 NA intron (NM_001206671, intron 3 of 5) intron (NM_001206671, intron 3 of 5) 31050 NM_001346694 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 510-218 chr5 13001859 13002092 + 3 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 30911 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 483-123 chr2 128723361 128723634 + 3 NA Intergenic Intergenic -141103 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 340-510 chr7 78658455 78658732 + 3 NA intron (NM_001301128, intron 2 of 20) L1MD1|LINE|L1 311351 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 355-373 chr4 99389110 99389365 + 3 NA Intergenic L1MB2|LINE|L1 -36491 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 651-120 chr8 91971197 91971562 + 3 NA intron (NM_004349, intron 9 of 10) intron (NM_004349, intron 9 of 10) 46301 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 582-162 chr8 135020046 135020278 + 3 NA Intergenic L2a|LINE|L2 170227 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 432-81 chr14 63685577 63685766 + 3 NA 3' UTR (NM_030791, exon 3 of 3).2 3' UTR (NM_030791, exon 3 of 3).2 42394 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 355-138 chr12 133162176 133162420 + 3 NA Intergenic L1M2|LINE|L1 -19197 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 346-142 chr14 78447662 78447909 + 3 NA intron (NM_004796, intron 1 of 16) MIR|SINE|MIR 44066 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 521-201 chr5 117634613 117634833 + 3 NA Intergenic L1MEf|LINE|L1 -95638 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 491-78 chr15 69420374 69420624 + 3 NA intron (NM_138555, intron 3 of 22) intron (NM_138555, intron 3 of 22) -5470 NR_132969 145694 Hs.147229 NR_132969 ENSG00000259426 LOC145694 - uncharacterized LOC145694 ncRNA 440-264 chr9 27470264 27470534 + 3 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -53915 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 499-88 chr17 57372399 57372740 + 3 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 115550 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 160-117 chr8 79573502 79573602 + 3 NA Intergenic Intergenic -37565 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 411-209 chr4 96582173 96582359 + 3 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 271563 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 347-462 chr7 39019418 39019570 + 3 NA intron (NM_007252, intron 2 of 10) HAL1ME|LINE|L1 -5927 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 760-16 chr14 42689055 42689498 + 3 NA Intergenic Intergenic 1082420 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 1061 chr11 91590438 91591254 + 3 NA Intergenic L1PB4|LINE|L1 -634188 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 413-243 chr5 105554954 105555147 + 3 NA Intergenic Intergenic 455576 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 533-80 chr17 62367169 62367415 + 3 NA Intergenic L2a|LINE|L2 -2926 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 520-86 chr14 47989361 47989588 + 3 NA Intergenic Intergenic -194460 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 547-34 chr11 42868564 42868838 + 3 NA Intergenic Intergenic 400668 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 517-80 chr14 66793918 66794139 + 3 NA intron (NM_001024218, intron 3 of 21) L1M4b|LINE|L1 286621 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 485-114 chr19 28752543 28752837 + 3 NA Intergenic Intergenic -24996 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 251-137 chr18 7588570 7588734 + 3 NA intron (NM_002845, intron 1 of 30) Charlie2a|DNA|hAT-Charlie 21336 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 473-268 chr8 56382311 56382533 + 3 NA intron (NR_103832, intron 2 of 3) intron (NR_103832, intron 2 of 3) 8288 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 555-43 chr12 58269311 58269704 + 3 NA Intergenic Intergenic 181615 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 809-57 chr8 144780824 144781278 + 3 NA intron (NM_001286769, intron 1 of 5) AluY|SINE|Alu 6294 NM_001286770 80778 Hs.631854 NM_030580 ENSG00000196378 ZNF34 KOX32 zinc finger protein 34 protein-coding 472-348 chr9 108043090 108043306 + 3 NA Intergenic L1M4|LINE|L1 -553429 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 460-131 chr2 15839155 15839310 + 3 NA Intergenic MIRc|SINE|MIR -81167 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 484-20 chr1 197369390 197369640 + 3 NA intron (NM_001193640, intron 3 of 9) intron (NM_001193640, intron 3 of 9) 101263 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 373-386 chr7 71052501 71052765 + 3 NA Intergenic L1MA8|LINE|L1 -79511 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 553-238 chr8 121769623 121770039 + 3 NA Intergenic Intergenic -128391 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 702-48 chr2 123225705 123226016 + 3 NA Intergenic L1M1|LINE|L1 -152379 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 609-25 chr12 73533425 73533927 + 3 NA Intergenic MIRb|SINE|MIR 374486 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 564-164 chr5 151571513 151571716 + 3 NA Intergenic Intergenic -2670 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 634-10 chr1 234147352 234147700 + 3 NA intron (NM_173508, intron 2 of 7) L1MEh|LINE|L1 -66685 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 492-13 chr1 179488061 179488344 + 3 NA intron (NR_073544, intron 17 of 25) Charlie7|DNA|hAT-Charlie 87746 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 638-67 chr2 75378749 75379088 + 3 NA Intergenic L2|LINE|L2 -145150 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 244-62 chr11 134768832 134768921 + 3 NA Intergenic L1MA4A|LINE|L1 32931 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 331-423 chr5 73541649 73541894 + 3 NA Intergenic Intergenic 23868 NM_023039 57763 Hs.239154 NM_023039 ENSG00000164331 ANKRA2 ANKRA ankyrin repeat family A member 2 protein-coding 334-279 chr2 128588446 128588676 + 3 NA Intergenic L1MEc|LINE|L1 -269693 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 521-135 chr2 233056632 233056936 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -3558 NM_005541 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 388-324 chr7 52150888 52151175 + 3 NA Intergenic L2a|LINE|L2 -757775 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 361-2 chr1 21123221 21123358 + 3 NA intron (NM_001198803, intron 1 of 12) AluSz6|SINE|Alu -11906 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 888-28 chr3 53411179 53411799 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -63946 NM_001290205 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 826-36 chr20 52509639 52510083 + 3 NA Intergenic Intergenic -110977 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 600-73 chr2 167767405 167767699 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -51120 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 577-140 chr5 14939923 14940124 + 3 NA Intergenic MIRc|SINE|MIR -68245 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 300-87 chr12 41757164 41757409 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -6903 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 364-448 chr8 101257685 101257911 + 3 NA Intergenic Intergenic -51734 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 506-238 chr5 118395398 118395690 + 3 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 112970 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 489-62 chr12 128349667 128349837 + 3 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 55660 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 249-359 chr6 124220406 124220534 + 3 NA intron (NM_001300737, intron 2 of 7) L1ME4a|LINE|L1 -62535 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 392-105 chr16 74750281 74750426 + 3 NA intron (NM_024306, intron 1 of 6) intron (NM_024306, intron 1 of 6) 24467 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 464-250 chr8 46542610 46542875 + 3 NA Intergenic ALR/Alpha|Satellite|centr 74901 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 365-2 chr1 18205338 18205513 + 3 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 97627 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 526-150 chr20 19002852 19003136 + 3 NA Intergenic Intergenic -172791 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 300-108 chr14 44163761 44163908 + 3 NA Intergenic Intergenic 343449 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 1057-7 chr18 4755394 4755790 + 3 NA Intergenic Intergenic -300285 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 466-200 chr5 35902705 35902985 + 3 NA Intergenic Intergenic 35777 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 681-46 chr22 49011071 49011414 + 3 NA Intergenic Intergenic 144472 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 377-192 chr2 29688223 29688427 + 3 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -212948 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 414-216 chr3 117321102 117321418 + 3 NA Intergenic L1M3d|LINE|L1 369665 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 464-232 chr7 21231877 21232168 + 3 NA Intergenic L1MA8|LINE|L1 -196061 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 528-181 chr4 95788834 95789118 + 3 NA Intergenic Intergenic -51117 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 1153-16 chr8 131059632 131060253 + 3 NA Intergenic Intergenic -19033 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 577-9 chr1 76643690 76643994 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 135425 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 678-74 chr4 13295989 13296415 + 3 NA Intergenic Intergenic 188138 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 662-10 chr10 61694634 61695029 + 3 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 31870 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 478-284 chr8 43806393 43806637 + 3 NA Intergenic ALR/Alpha|Satellite|centr 514073 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 833-13 chr19 58262579 58263008 + 3 NA 3' UTR (NM_001320786, exon 7 of 7) 3' UTR (NM_001320786, exon 7 of 7) -16162 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 494-309 chr9 35410294 35410473 + 3 NA intron (NR_003582, intron 2 of 10) intron (NR_003582, intron 2 of 10) 3628 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 369-328 chr5 81089167 81089385 + 3 NA intron (NM_006909, intron 9 of 26) intron (NM_006909, intron 9 of 26) -128369 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 506-198 chr4 13881085 13881311 + 3 NA intron (NR_121681, intron 3 of 3) MLT1C|LTR|ERVL-MaLR 226019 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 646-75 chr21 24182177 24182523 + 3 NA Intergenic Intergenic 139027 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 496-186 chr3 144574601 144574918 + 3 NA Intergenic HAL1ME|LINE|L1 601678 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 490-202 chr4 71096783 71097042 + 3 NA Intergenic Intergenic -90347 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 467-69 chr13 59577926 59578115 + 3 NA Intergenic L1MA4|LINE|L1 -434698 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 420-95 chr16 62909811 62910002 + 3 NA Intergenic Intergenic -873468 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 511-113 chr2 40115086 40115313 + 3 NA 3' UTR (NM_001112802, exon 8 of 8) 3' UTR (NM_001112802, exon 8 of 8) 197565 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 440-220 chr6 80799111 80799331 + 3 NA Intergenic Intergenic 692550 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 705-41 chr18 4592576 4593098 + 3 NA Intergenic L3|LINE|CR1 -137530 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 737-27 chr15 80641506 80641886 + 3 NA Intergenic Intergenic -53614 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 442-161 chr20 46518566 46518742 + 3 NA Intergenic Intergenic -5082 NM_001270497 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 417-306 chr9 78942743 78942949 + 3 NA Intergenic Intergenic 202820 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 646-133 chr8 133420461 133420841 + 3 NA Intergenic Intergenic -123347 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 362-211 chr2 61110931 61111095 + 3 NA intron (NM_001129993, intron 16 of 21) LTR37B|LTR|ERV1 33962 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 535-172 chr3 165730957 165731315 + 3 NA Intergenic Intergenic 106287 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 743-25 chr16 71618562 71619128 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -7339 NM_052858 91862 Hs.513706 NM_052858 ENSG00000140832 MARVELD3 MARVD3|MRVLDC3 MARVEL domain containing 3 protein-coding 505-138 chr2 34424139 34424348 + 3 NA Intergenic MER66-int|LTR|ERV1 -253314 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 297-509 chr9 30353695 30353880 + 3 NA Intergenic Intergenic 54667 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 897-17 chr18 53264964 53265410 + 3 NA intron (NM_005215, intron 12 of 28) MamSINE1|SINE|tRNA-RTE 28086 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 279-47 chr10 64892992 64893103 + 3 NA Intergenic MLT2B3|LTR|ERVL 31471 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 471-198 chr4 132693999 132694244 + 3 NA Intergenic L1MB7|LINE|L1 103032 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 424-253 chr7 8483843 8484068 + 3 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 50346 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 390-57 chr11 37587589 37587730 + 3 NA Intergenic L1MEc|LINE|L1 -350942 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 492-31 chr10 107846803 107847117 + 3 NA Intergenic Intergenic 222333 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 487-222 chr5 5255762 5256130 + 3 NA intron (NM_139056, intron 17 of 22) L1M5|LINE|L1 115616 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 612-76 chr20 29275700 29276079 + 3 NA Intergenic ALR/Alpha|Satellite|centr 141072 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 484-186 chr4 36903798 36903970 + 3 NA Intergenic MamRep1879|DNA|hAT-Tip100? -97895 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 603-24 chr11 31918057 31918363 + 3 NA Intergenic Intergenic 91643 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 393-352 chr8 81538503 81538723 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -7223 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 708-30 chr15 78272692 78273137 + 3 NA intron (NM_018602, intron 3 of 7) intron (NM_018602, intron 3 of 7) 6696 NM_001130183 55466 Hs.513053 NM_018602 ENSG00000140403 DNAJA4 MST104|MSTP104|PRO1472 DnaJ heat shock protein family (Hsp40) member A4 protein-coding 199-151 chr22 40571996 40572120 + 3 NA intron (NM_020831, intron 2 of 14) L1MB8|LINE|L1 -38231 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 417-46 chr11 27691134 27691315 + 3 NA intron (NR_033312, intron 8 of 8) intron (NR_033312, intron 8 of 8) 8443 NM_170734 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 509-249 chr8 62538848 62539185 + 3 NA intron (NM_001304533, intron 1 of 6) L2a|LINE|L2 290162 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 586-141 chr7 51955843 51956216 + 3 NA Intergenic L1MA7|LINE|L1 -562773 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 337-568 chr8 137181419 137181599 + 3 NA Intergenic L2c|LINE|L2 232079 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 224-169 chr2 228549163 228549274 + 3 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 62177 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 420-114 chr19 9571238 9571400 + 3 NA intron (NM_001308269, intron 1 of 4) intron (NM_001308269, intron 1 of 4) 13185 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 482-190 chr4 89448236 89448453 + 3 NA Intergenic Intergenic -140544 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 674-42 chr18 26562731 26563070 + 3 NA intron (NM_001258222, intron 1 of 4) MLT1B|LTR|ERVL-MaLR -13086 NM_001258221 284252 Hs.526630 NM_198991 ENSG00000134504 KCTD1 C18orf5 potassium channel tetramerization domain containing 1 protein-coding 494-43 chr11 110769461 110769690 + 3 NA Intergenic Intergenic -56386 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 449-141 chr20 21646010 21646221 + 3 NA intron (NR_109878, intron 1 of 4) L1M4|LINE|L1 57470 NR_109878 101929608 Hs.694665 NR_109878 ENSG00000280350 LINC01726 - long intergenic non-protein coding RNA 1726 ncRNA 761-75 chr8 135031695 135032104 + 3 NA Intergenic (ATTC)n|Simple_repeat|Simple_repeat 181964 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 526-10 chr1 185581892 185582270 + 3 NA intron (NR_110793, intron 2 of 3) HERVK22-int|LTR|ERVK 46407 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 295-285 chr3 22259497 22259659 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie 302439 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 470-244 chr7 1804295 1804556 + 3 NA Intergenic MER41B|LTR|ERV1 39828 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 440-204 chr5 106374548 106374778 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie 636351 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 374-100 chr14 56567538 56567880 + 3 NA Intergenic Intergenic -12089 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 682-37 chr15 93839283 93839644 + 3 NA Intergenic Intergenic -17097 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 415-272 chr8 26100161 26100412 + 3 NA Intergenic L1MB4|LINE|L1 -54873 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 537-216 chr6 75468699 75469014 + 3 NA intron (NR_110608, intron 1 of 1) intron (NR_110608, intron 1 of 1) 24944 NM_001289987 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 523-64 chr12 34503707 34504054 + 3 NA Intergenic ALR/Alpha|Satellite|centr 481384 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 634-160 chr9 103653716 103654035 + 3 NA Intergenic Intergenic -328842 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 523-54 chr11 99354773 99355067 + 3 NA intron (NM_001243271, intron 2 of 20) L2a|LINE|L2 -201225 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 380-7 chr1 50040957 50041156 + 3 NA Intergenic Intergenic -6999 NM_001144777 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 684-39 chr15 91474088 91474464 + 3 NA intron (NR_110106, intron 2 of 3) L1MB8|LINE|L1 10937 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 337-433 chr5 24576774 24576951 + 3 NA intron (NM_001362460, intron 2 of 9) L1MC3|LINE|L1 68116 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 670-93 chr5 18145667 18146025 + 3 NA Intergenic Intergenic 338572 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 263-197 chr2 61820897 61821001 + 3 NA Intergenic Intergenic 33111 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 472-259 chr5 126173573 126173827 + 3 NA Intergenic L1PA8|LINE|L1 -5877 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 531-49 chr12 115020755 115021046 + 3 NA Intergenic Intergenic -336725 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 803-46 chr5 75746572 75747046 + 3 NA Intergenic Intergenic -29372 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 325-541 chr8 100880220 100880406 + 3 NA Intergenic L1MC4|LINE|L1 70258 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 364-325 chr5 4026229 4026400 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger 430482 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 795-33 chr2 192808533 192808861 + 3 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 58852 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 528 chr1 12729944 12730294 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 14004 NR_111984 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 851-27 chr20 1061666 1062063 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -51365 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 522-70 chr13 87121204 87121438 + 3 NA Intergenic Intergenic 209401 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 664-97 chr6 65204417 65204820 + 3 NA intron (NM_001292009, intron 12 of 43) L1PA15-16|LINE|L1 -96800 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 522-47 chr11 63388703 63388969 + 3 NA intron (NM_080866, intron 6 of 9) L1M1|LINE|L1 19051 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 415-62 chr12 109845889 109846145 + 3 NA Intergenic MER87B|LTR|ERV1 -12610 NM_021625 59341 Hs.506713 NM_021625 ENSG00000111199 TRPV4 BCYM3|CMT2C|HMSN2C|OTRPC4|SMAL|SPSMA|SSQTL1|TRP12|VRL2|VROAC transient receptor potential cation channel subfamily V member 4 protein-coding 1025-15 chr4 183372997 183373474 + 3 NA Intergenic Intergenic -50809 NM_001185149 100132463 Hs.727475 NM_001185149 ENSG00000185758 CLDN24 CLDN21 claudin 24 protein-coding 703-87 chr7 78801123 78801473 + 3 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -207690 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 423-107 chr18 7837901 7838189 + 3 NA intron (NM_002845, intron 2 of 30) L1MA2|LINE|L1 270729 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 704-84 chr8 69137421 69137796 + 3 NA Intergenic Intergenic -33418 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 650-76 chr22 33896322 33896656 + 3 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 23939 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 532-178 chr3 188736041 188736421 + 3 NA intron (NM_001167672, intron 6 of 9) intron (NM_001167672, intron 6 of 9) 47450 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 484-48 chr12 73327494 73327783 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 168448 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 514-297 chr9 89198015 89198288 + 3 NA Intergenic L1PB3|LINE|L1 -19333 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 385-314 chr5 178706247 178706390 + 3 NA Intergenic Intergenic 24341 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 298-377 chr5 121570139 121570273 + 3 NA Intergenic L1MA4A|LINE|L1 247656 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 500-186 chr3 87533369 87533543 + 3 NA Intergenic L1M4|LINE|L1 -256872 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 215-142 chr2 48910573 48910681 + 3 NA Intergenic LTR37A|LTR|ERV1 -148976 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 308-376 chr5 39295460 39295627 + 3 NA intron (NM_001737, intron 9 of 10) L1MA5A|LINE|L1 -24894 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 498-133 chr2 136661793 136661991 + 3 NA Intergenic Intergenic -103653 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 749-102 chr9 11269246 11269662 + 3 NA Intergenic LTR25-int|LTR|ERV1 656248 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 587-119 chr4 66526475 66526847 + 3 NA Intergenic L1MEc|LINE|L1 249837 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 190-89 chr2 72044233 72044309 + 3 NA Intergenic Intergenic 103591 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 398-356 chr8 87737047 87737211 + 3 NA Intergenic Intergenic 136886 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 502-170 chr3 4240688 4240898 + 3 NA Intergenic Intergenic -62511 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 807-39 chr3 88387989 88388368 + 3 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 49722 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 572-151 chr6 40511126 40511342 + 3 NA intron (NM_020737, intron 1 of 2) MIR|SINE|MIR 76130 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 500-198 chr4 35713613 35713821 + 3 NA Intergenic L1MA4A|LINE|L1 530222 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 586-62 chr17 69439647 69439930 + 3 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 25091 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 705-56 chr2 185510697 185511074 + 3 NA Intergenic L1M2|LINE|L1 227834 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 162-43 chr17 61692454 61692533 + 3 NA intron (NM_032043, intron 18 of 19) L1MB1|LINE|L1 -101274 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 503-226 chr5 22387839 22388084 + 3 NA intron (NM_001364104, intron 2 of 13) MER110-int|LTR|ERV1 -174111 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 951-27 chr6 164930614 164931065 + 3 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat -108776 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 1210-4 chr11 81689134 81689863 + 3 NA Intergenic Intergenic 201338 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 424-289 chr9 32523460 32523674 + 3 NA intron (NM_014314, intron 1 of 17) L2c|LINE|L2 2629 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 549-133 chr22 26080181 26080404 + 3 NA Intergenic Intergenic -89170 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 222-274 chr4 114781332 114781481 + 3 NA Intergenic Intergenic 124647 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 536-33 chr10 59760929 59761198 + 3 NA Intergenic L1MB2|LINE|L1 -7608 NM_001304732 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 701-85 chr7 3412266 3412665 + 3 NA intron (NM_152744, intron 1 of 44) L1ME4b|LINE|L1 111213 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 414-295 chr7 14490798 14491083 + 3 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 350510 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 284-222 chr2 213460721 213460828 + 3 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 176310 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 389-335 chr7 4553521 4553747 + 3 NA Intergenic Intergenic -128661 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 526-234 chr8 8659621 8659954 + 3 NA Intergenic Intergenic -42150 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 413-59 chr12 13663615 13663789 + 3 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -286957 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 289-421 chr6 131724595 131724801 + 3 NA intron (NR_133007, intron 19 of 23) MIR|SINE|MIR -13681 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 506-295 chr8 135309775 135310091 + 3 NA Intergenic Intergenic 75802 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 661-32 chr16 60316722 60317116 + 3 NA Intergenic Intergenic 42874 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 838-41 chr8 125305130 125305631 + 3 NA intron (NM_001349486, intron 5 of 7) MIRb|SINE|MIR -124978 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 201-182 chr4 141544703 141544829 + 3 NA Intergenic Intergenic -91817 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 442-289 chr8 89468025 89468206 + 3 NA Intergenic L1PB1|LINE|L1 289596 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 787-44 chr7 12602953 12603266 + 3 NA intron (NM_033128, intron 1 of 13) intron (NM_033128, intron 1 of 13) 13586 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 524-73 chr15 95594292 95594622 + 3 NA Intergenic L2b|LINE|L2 161364 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 585-78 chr2 122937280 122937527 + 3 NA Intergenic Intergenic 136078 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 442-81 chr14 71890906 71891127 + 3 NA Intergenic Intergenic -41155 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 441-181 chr4 62616987 62617201 + 3 NA Intergenic Charlie23a|DNA|hAT-Charlie -455329 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 277-227 chr20 19003356 19003528 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -173239 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 674-99 chr8 49443947 49444403 + 3 NA Intergenic Intergenic 68005 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 780-12 chr11 132679500 132679907 + 3 NA intron (NM_001319104, intron 1 of 6) L1MB8|LINE|L1 263934 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 585-112 chr4 100439025 100439388 + 3 NA intron (NM_001159694, intron 4 of 10) L1MA9|LINE|L1 -43959 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 690-25 chr12 80485859 80486114 + 3 NA intron (NM_001145026, intron 9 of 44) MIRb|SINE|MIR 41751 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 519-9 chr1 87518960 87519183 + 3 NA Intergenic Intergenic -147416 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 822-18 chr16 62951974 62952360 + 3 NA Intergenic Intergenic -915729 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 536-208 chr7 30220022 30220332 + 3 NA Intergenic L1MC1|LINE|L1 -64420 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 353-263 chr2 173333563 173333727 + 3 NA Intergenic L1MD1|LINE|L1 -21227 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 323-76 chr11 25697102 25697294 + 3 NA Intergenic L1PA15-16|LINE|L1 -491925 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 630-96 chr4 73437582 73437925 + 3 NA intron (NM_001354717, intron 2 of 14) intron (NM_001354717, intron 2 of 14) 1532 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 324-312 chr20 45035401 45035574 + 3 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 65640 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 694-13 chr10 52612075 52612425 + 3 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) -141717 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 730-76 chr7 153535311 153535632 + 3 NA Intergenic MLT2A2|LTR|ERVL -123237 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 787-2 chr1 166252602 166253158 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger -86125 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 374-97 chr14 42509650 42509811 + 3 NA Intergenic L1PA14|LINE|L1 902874 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 754-82 chr8 136845648 136846093 + 3 NA intron (NR_147196, intron 4 of 5) L1PB1|LINE|L1 315072 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 491-50 chr12 58277658 58277865 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 189869 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 352-406 chr5 25809729 25809930 + 3 NA Intergenic Intergenic 618876 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 335-277 chr2 191776052 191776189 + 3 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -16720 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 684-34 chr14 33810223 33810530 + 3 NA Intergenic Intergenic 101439 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 226-134 chr18 6930985 6931066 + 3 NA Intergenic Intergenic -1156 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 647-71 chr4 19366436 19366774 + 3 NA Intergenic Intergenic -885300 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 677-32 chr15 60724046 60724315 + 3 NA intron (NM_134261, intron 1 of 10) L4_A_Mam|LINE|RTE-X 42611 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 480-173 chr20 43031327 43031611 + 3 NA intron (NM_133170, intron 1 of 31) MLT1A1|LTR|ERVL-MaLR 62726 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 489-34 chr10 98575301 98575490 + 3 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -128432 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 766-66 chr7 122016218 122016606 + 3 NA intron (NM_002851, intron 12 of 29) intron (NM_002851, intron 12 of 29) 127837 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 261-292 chr4 107799628 107799737 + 3 NA Intergenic Intergenic -24883 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 456-274 chr6 49168802 49168977 + 3 NA Intergenic L1MA6|LINE|L1 294364 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 1369-5 chrX 50544922 50545785 + 3 NA Intergenic L1MCa|LINE|L1 -74528 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 561-197 chr8 51745024 51745389 + 3 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 64239 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 404-17 chr1 114376567 114376789 + 3 NA Intergenic HERV35I-int|LTR|ERV1 134525 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 599-17 chr10 102220330 102220682 + 3 NA Intergenic Intergenic -5793 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 491-122 chr2 95222525 95222837 + 3 NA Intergenic L1ME1|LINE|L1 -51768 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 712-14 chr10 52192144 52192498 + 3 NA intron (NM_001098512, intron 9 of 17) L1MC5a|LINE|L1 121807 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 443-33 chr10 10204142 10204355 + 3 NA Intergenic L1MA7|LINE|L1 145526 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 534-263 chr8 110617752 110618068 + 3 NA Intergenic Intergenic 409523 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 520-170 chr21 17130002 17130183 + 3 NA Intergenic Intergenic -308798 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 225-286 chr5 100225488 100225626 + 3 NA Intergenic Intergenic 162697 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 685-99 chr9 110790703 110791214 + 3 NA intron (NM_001369398, intron 8 of 8) L2a|LINE|L2 62696 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 576-25 chr11 92356769 92357083 + 3 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 4830 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 510-83 chr14 86756815 86757115 + 3 NA Intergenic Intergenic -148813 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 465-147 chr2 222208189 222208493 + 3 NA intron (NM_181457, intron 7 of 7) intron (NM_181457, intron 7 of 7) -89806 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 446-189 chr3 87771187 87771379 + 3 NA Intergenic L1PB4|LINE|L1 -21423 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 737-75 chr6 105776685 105777049 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie -309469 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 491-263 chr8 110093826 110094151 + 3 NA Intergenic LTR90A|LTR|LTR -118217 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 541-54 chr13 20333356 20333614 + 3 NA Intergenic Intergenic 100361 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 204-302 chr8 140126672 140126779 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -26190 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 433-239 chr6 4450037 4450300 + 3 NA Intergenic Intergenic -38630 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 544-13 chr1 172335266 172335584 + 3 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -85260 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 538-6 chr1 75683972 75684180 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -40271 NM_001286043 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase medium chain protein-coding 387-111 chr14 82894559 82894777 + 3 NA Intergenic Intergenic 252036 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 466-267 chr8 83235782 83236062 + 3 NA Intergenic L1M2|LINE|L1 -167836 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 514-41 chr10 116555929 116556158 + 3 NA exon (NM_000936, exon 9 of 13) exon (NM_000936, exon 9 of 13) 10112 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 188-135 chr3 106553549 106553660 + 3 NA Intergenic Intergenic -684203 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 459-195 chr3 121000310 121000533 + 3 NA intron (NR_145517, intron 3 of 8) L1P4e|LINE|L1 -49219 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 396-292 chr5 116884324 116884502 + 3 NA Intergenic Intergenic -122204 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 525-275 chr8 144838482 144838769 + 3 NA intron (NM_001282796, intron 4 of 4) intron (NM_001282796, intron 4 of 4) 11065 NM_001349809 7553 Hs.493218 NM_003416 ENSG00000147789 ZNF7 HF.16|KOX4|zf30 zinc finger protein 7 protein-coding 939-18 chr22 47530754 47531329 + 3 NA Intergenic MER31-int|LTR|ERV1 -43930 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 505-278 chr7 3415227 3415656 + 3 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 114189 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 378-98 chr12 14270644 14270853 + 3 NA Intergenic MER34A|LTR|ERV1 -94884 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 841-31 chr5 8292044 8292610 + 3 NA Intergenic Intergenic 165237 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 670-18 chr11 11335285 11335688 + 3 NA intron (NM_001363464, intron 6 of 9) intron (NM_001363464, intron 6 of 9) 17764 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 533-93 chr2 18099252 18099542 + 3 NA Intergenic Intergenic 220730 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 757-53 chr6 7883731 7884074 + 3 NA intron (NM_030810, intron 9 of 9) intron (NM_030810, intron 9 of 9) 26175 NM_001145549 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 192-199 chr8 5793815 5793928 + 3 NA Intergenic Intergenic 612677 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 611-42 chr14 81901876 81902296 + 3 NA Intergenic L1MA8|LINE|L1 -158948 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 376-23 chr1 189230307 189230577 + 3 NA Intergenic L1M5|LINE|L1 1245568 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 557-48 chr12 133000003 133000274 + 3 NA intron (NM_001330514, intron 2 of 4) intron (NM_001330514, intron 2 of 4) 13771 NM_019591 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 463-193 chr3 122153466 122153704 + 3 NA Intergenic L1M2|LINE|L1 -30083 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 532-27 chr10 128452733 128453082 + 3 NA Intergenic AluSz|SINE|Alu 166957 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 438-187 chr4 28370102 28370346 + 3 NA Intergenic Intergenic -449358 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 687-46 chr16 66301377 66301783 + 3 NA Intergenic Intergenic -65111 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 362-394 chr6 162051913 162052088 + 3 NA intron (NM_013988, intron 2 of 8) MER2|DNA|TcMar-Tigger 581023 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 856-10 chr12 12091838 12092309 + 3 NA intron (NM_001370269, intron 6 of 7) L3|LINE|CR1 -19879 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 608-72 chr2 84538043 84538399 + 3 NA intron (NM_001370, intron 4 of 76) MIRb|SINE|MIR 21766 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 514-28 chr10 63624369 63624660 + 3 NA 3' UTR (NM_001001330, exon 8 of 8) 3' UTR (NM_001001330, exon 8 of 8) -102624 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 371-169 chr2 76502110 76502302 + 3 NA Intergenic Intergenic -483759 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 547-268 chrX 73902613 73902825 + 3 NA Intergenic AluSp|SINE|Alu -41605 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 475-273 chr8 21197375 21197629 + 3 NA Intergenic Intergenic -100737 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 621-34 chr14 78573215 78573557 + 3 NA intron (NM_004796, intron 1 of 16) THE1D-int|LTR|ERVL-MaLR 169667 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 506-264 chr7 13996300 13996625 + 3 NA Intergenic Intergenic -5037 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 272-91 chr12 33634670 33634787 + 3 NA Intergenic Intergenic -194909 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 519-68 chr15 91082874 91083144 + 3 NA Intergenic Intergenic -16579 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 873-24 chr4 6144130 6144522 + 3 NA intron (NM_144720, intron 1 of 12) L1M4|LINE|L1 50293 NM_001306133 152789 Hs.479066 NM_144720 ENSG00000152969 JAKMIP1 Gababrbp|JAMIP1|MARLIN1 janus kinase and microtubule interacting protein 1 protein-coding 494-316 chr9 89128048 89128254 + 3 NA intron (NM_016848, intron 1 of 11) MER41-int|LTR|ERV1 50667 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 493-244 chr5 66373712 66373878 + 3 NA Intergenic L1M7|LINE|L1 137809 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 366-273 chr3 42337560 42337772 + 3 NA Intergenic Intergenic -71481 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 379-112 chr16 31318115 31318322 + 3 NA intron (NM_001145808, intron 14 of 29) L1M4c|LINE|L1 -36958 NM_001286375 3687 Hs.248472 NM_000887 ENSG00000140678 ITGAX CD11C|SLEB6 integrin subunit alpha X protein-coding 676-107 chr8 13477645 13477940 + 3 NA intron (NM_024767, intron 2 of 4) HAL1ME|LINE|L1 37059 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 1213-9 chr5 3582427 3583142 + 3 NA Intergenic Intergenic -13048 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 548-239 chr8 122033127 122033443 + 3 NA Intergenic Intergenic -391845 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 546-102 chr2 64688520 64688791 + 3 NA Intergenic Intergenic -34742 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 508-181 chr5 16017054 16017335 + 3 NA Intergenic Intergenic 82012 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 672-42 chr18 2257549 2257894 + 3 NA Intergenic Intergenic 313784 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 399-164 chr2 138465122 138465298 + 3 NA Intergenic Intergenic -36560 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 424-68 chr14 57051922 57052063 + 3 NA Intergenic L2c|LINE|L2 216913 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 232-164 chr2 35943787 35943954 + 3 NA Intergenic Intergenic 411700 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 470-253 chr7 55850530 55850905 + 3 NA intron (NM_207366, intron 2 of 9) intron (NM_207366, intron 2 of 9) 12035 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 309-489 chr6 135032121 135032256 + 3 NA intron (NM_001363686, intron 4 of 18) intron (NM_001363686, intron 4 of 18) 22634 NM_006620 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 1130-2 chr10 91328491 91329322 + 3 NA intron (NR_024467, intron 4 of 4) L1MB7|LINE|L1 -80329 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 538-178 chr4 93825968 93826284 + 3 NA Intergenic Intergenic -2627 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 486-3 chr1 47394795 47395002 + 3 NA intron (NR_126355, intron 3 of 4) HAL1|LINE|L1 -21387 NM_012186 2301 Hs.112968 NM_012186 ENSG00000186790 FOXE3 AAT11|ASGD2|CTRCT34|FKHL12|FREAC8 forkhead box E3 protein-coding 162-10 chr1 194623797 194623875 + 3 NA Intergenic Intergenic 1319091 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 486-228 chr4 111656729 111656974 + 3 NA Intergenic Intergenic -488603 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 565-96 chr20 24517672 24518114 + 3 NA intron (NM_001323606, intron 2 of 4) AluY|SINE|Alu 47932 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 1132-11 chr5 62853287 62853846 + 3 NA Intergenic Intergenic 274747 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 509-250 chr8 78480176 78480465 + 3 NA Intergenic HERV16-int|LTR|ERVL -36020 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 879-13 chr18 2043860 2044448 + 3 NA Intergenic Intergenic 527351 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 660-89 chr5 178882918 178883260 + 3 NA exon (NM_058230, exon 5 of 5) exon (NM_058230, exon 5 of 5) -12824 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 665-98 chr7 86072311 86072618 + 3 NA Intergenic L1MA9|LINE|L1 -571445 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 406-192 chr3 106339492 106339679 + 3 NA Intergenic Intergenic -470184 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 431-114 chr19 49947171 49947355 + 3 NA Intergenic AluJr|SINE|Alu 13909 NM_052884 114132 Hs.661852 NM_052884 ENSG00000161640 SIGLEC11 - sialic acid binding Ig like lectin 11 protein-coding 651-111 chr7 106348794 106349141 + 3 NA Intergenic L1MEf|LINE|L1 -63984 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 936-34 chr9 11798829 11799254 + 3 NA Intergenic Intergenic -894344 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 605-100 chr6 65051614 65051858 + 3 NA intron (NM_001292009, intron 13 of 43) L1MA8|LINE|L1 -249682 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 606-34 chr12 9019114 9019388 + 3 NA Intergenic L1MA3|LINE|L1 29626 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 509-45 chr11 81182851 81183242 + 3 NA Intergenic Intergenic -420243 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 479-111 chr2 126837830 126838049 + 3 NA Intergenic MIR|SINE|MIR -60951 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 527-236 chr6 167583674 167583999 + 3 NA Intergenic L1M1|LINE|L1 95387 NR_117091 401286 Hs.487182 NR_117091 ENSG00000272549 LINC02538 - long intergenic non-protein coding RNA 2538 ncRNA 570-215 chrX 82134208 82134498 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 932251 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 510-146 chr2 71018867 71019115 + 3 NA Intergenic SATR2|Satellite|Satellite -5084 NR_002185 79315 Hs.327033 NR_002185 ENSG00000205847 OR7E91P - olfactory receptor family 7 subfamily E member 91 pseudogene pseudo 490-197 chr4 43032018 43032329 + 3 NA Intergenic L2c|LINE|L2 138907 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 437-65 chr13 103766592 103766862 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 341527 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 1057-4 chr16 35447991 35448459 + 3 NA Intergenic Intergenic 32371 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 922-27 chr5 46069800 46070342 + 3 NA Intergenic ALR/Alpha|Satellite|centr -373691 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 355-520 chr8 138112219 138112371 + 3 NA Intergenic Intergenic -28750 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 530-28 chr10 65664835 65665065 + 3 NA intron (NR_120647, intron 3 of 5) AluJr|SINE|Alu 93525 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 704-71 chr5 149099388 149099714 + 3 NA intron (NR_122044, intron 2 of 2) L1PB1|LINE|L1 36234 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 736-9 chr10 20011711 20012305 + 3 NA intron (NM_001282736, intron 2 of 12) intron (NM_001282736, intron 2 of 12) 195576 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 544-97 chr18 78098815 78099112 + 3 NA Intergenic Intergenic -105236 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 858-29 chr20 42551168 42551716 + 3 NA intron (NM_133170, intron 7 of 31) UCON92|Unknown|Unknown -134041 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 577-180 chr7 30489449 30489910 + 3 NA Intergenic L1MB5|LINE|L1 -10813 NR_149002 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 549-168 chr5 87578950 87579204 + 3 NA Intergenic L2c|LINE|L2 -82965 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 494-319 chr9 133752550 133752820 + 3 NA Intergenic Intergenic -12730 NM_007101 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 737-7 chr10 83250494 83251030 + 3 NA Intergenic Intergenic 426327 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 663-123 chr9 90652295 90652590 + 3 NA Intergenic L1MB3|LINE|L1 -9618 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 1022-20 chr7 7630825 7631267 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -9706 NM_001302350 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 302-155 chr16 51539537 51539709 + 3 NA Intergenic Intergenic -222896 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 877-11 chr2 7221773 7222316 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -144164 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 436-107 chr17 14577943 14578197 + 3 NA Intergenic Intergenic 274330 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 352-316 chr3 53911816 53911978 + 3 NA Intergenic L1MB7|LINE|L1 -20038 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 515-182 chr4 66977668 66977999 + 3 NA Intergenic Intergenic 444167 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 276-444 chr8 66973232 66973425 + 3 NA intron (NM_001364911, intron 5 of 6) AluSz|SINE|Alu -10737 NM_001193502 100129654 Hs.120040 NM_001193502 ENSG00000261787 TCF24 TCF-24|bHLHa25 transcription factor 24 protein-coding 356-350 chr4 35269694 35269909 + 3 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 974138 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 488-2 chr1 31208196 31208372 + 3 NA intron (NM_024522, intron 1 of 6) MIRb|SINE|MIR 31603 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 578-58 chr14 61548090 61548406 + 3 NA intron (NM_006255, intron 13 of 13) intron (NM_006255, intron 13 of 13) 21946 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 444-234 chr7 14271993 14272211 + 3 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -280677 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 535-175 chr3 181170456 181170712 + 3 NA intron (NR_075091, intron 2 of 7) L1MB3|LINE|L1 -4560 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 916-27 chr5 104467567 104468037 + 3 NA Intergenic L1M4b|LINE|L1 -631672 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 638-130 chr6 40255141 40255461 + 3 NA Intergenic MER21C|LTR|ERVL 100705 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 633-121 chr8 83354606 83354997 + 3 NA Intergenic HUERS-P1-int|LTR|ERV1 -48957 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 510-75 chr14 64130298 64130597 + 3 NA intron (NM_015180, intron 76 of 114) L2b|LINE|L2 -35322 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 719-63 chr5 66555500 66555902 + 3 NA Intergenic L1MB4|LINE|L1 -40692 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 1199-13 chr3 19619622 19620384 + 3 NA Intergenic L1MA1|LINE|L1 -305072 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 563-81 chr19 37736785 37737029 + 3 NA Intergenic Intergenic -17146 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 324-392 chr4 61478106 61478301 + 3 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 276031 NM_001371342 452-273 chr8 108588036 108588236 + 3 NA Intergenic Intergenic 144512 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 513-125 chr2 39362364 39362584 + 3 NA intron (NM_003618, intron 2 of 33) L1MB1|LINE|L1 74811 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 438-12 chr1 116733220 116733425 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -21108 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 585-86 chr2 228323641 228323844 + 3 NA Intergenic MamSINE1|SINE|tRNA-RTE -142055 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 485-215 chr4 177422302 177422591 + 3 NA Intergenic L1MC1|LINE|L1 19991 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 404-32 chr10 39088881 39089074 + 3 NA Intergenic ALR/Alpha|Satellite|centr 392381 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 366-451 chr8 126430839 126431030 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 105439 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 848-12 chr14 52501853 52502342 + 3 NA intron (NM_001160047, intron 9 of 20) intron (NM_001160047, intron 9 of 20) 50408 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 308-439 chr6 153500854 153501041 + 3 NA Intergenic L1MEd|LINE|L1 -369665 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 326-303 chr20 57188001 57188206 + 3 NA intron (NM_001719, intron 3 of 6) L1MB7|LINE|L1 -25593 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 928-13 chr2 12891734 12892313 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 114990 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 632-2 chr1 60877253 60877602 + 3 NA Intergenic Intergenic -51843 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 462-132 chr2 24338266 24338576 + 3 NA intron (NM_001348182, intron 1 of 38) MER4B|LTR|ERV1 22115 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 358-81 chr11 115261169 115261327 + 3 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -72329 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 399-41 chr10 90236452 90236709 + 3 NA Intergenic Intergenic -279207 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 468-249 chr5 52582153 52582449 + 3 NA Intergenic Intergenic -205615 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 519-227 chr8 53097751 53098006 + 3 NA Intergenic L1MB2|LINE|L1 153759 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 626-38 chr14 48062817 48063206 + 3 NA Intergenic L1MCa|LINE|L1 -267997 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 296-160 chr15 78045310 78045442 + 3 NA intron (NM_144572, intron 2 of 12) intron (NM_144572, intron 2 of 12) 32276 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 374-323 chr5 146992007 146992273 + 3 NA intron (NM_001271900, intron 2 of 10) L1M3|LINE|L1 63997 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 574-150 chr6 48784752 48785040 + 3 NA Intergenic L1MA2|LINE|L1 678357 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 743-35 chr2 65462400 65462830 + 3 NA Intergenic L1M4|LINE|L1 -30016 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 709-20 chr12 118970366 118970859 + 3 NA Intergenic Intergenic -10929 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 1037-4 chr14 33100930 33101604 + 3 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 162388 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 860-7 chr11 80492752 80493341 + 3 NA Intergenic L1MA6|LINE|L1 269757 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 632-4 chr1 89320495 89320764 + 3 NA Intergenic L1M1|LINE|L1 -30267 NR_077244 729930 Hs.745054 NR_077244 LOC729930 - chromosome 11 open reading frame 74 pseudogene pseudo 460-18 chr1 200838474 200838661 + 3 NA intron (NM_001297707, intron 7 of 17) L2a|LINE|L2 -34414 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 316-33 chr1 177216393 177216596 + 3 NA intron (NM_021165, intron 1 of 7) L1M3b|LINE|L1 45536 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 544-213 chr7 54039304 54039590 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -227516 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 1517 chr6 55734568 55735514 + 3 NA Intergenic Intergenic 140549 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 777-54 chr5 82035444 82035839 + 3 NA intron (NM_031482, intron 2 of 7) L1ME3G|LINE|L1 63618 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 358-161 chr17 72499741 72499900 + 3 NA intron (NR_036488, intron 1 of 3) MIR|SINE|MIR 92984 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 346-398 chr5 103149956 103150170 + 3 NA intron (NM_001345878, intron 8 of 28) intron (NM_001345878, intron 8 of 28) 29762 NM_001345873 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 467-173 chr3 19935098 19935270 + 3 NA promoter-TSS (NM_144715) promoter-TSS (NM_144715) -967 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 504-105 chr18 25579942 25580137 + 3 NA Intergenic L1MA9|LINE|L1 -227873 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 448-115 chr2 104008613 104008809 + 3 NA Intergenic Intergenic 399621 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 816-3 chr10 62902168 62902723 + 3 NA Intergenic AluJo|SINE|Alu -83278 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 628-49 chr15 47514545 47514808 + 3 NA intron (NM_001198999, intron 3 of 19) L2a|LINE|L2 -202829 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 448-168 chr3 120010008 120010242 + 3 NA intron (NM_002093, intron 1 of 11) intron (NM_002093, intron 1 of 11) 74523 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 905-29 chr6 35910892 35911311 + 3 NA intron (NR_034069, intron 2 of 15) Tigger1|DNA|TcMar-Tigger 9997 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 778-36 chr2 75510485 75510967 + 3 NA intron (NM_032181, intron 3 of 3) L1ME4b|LINE|L1 -13342 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 502-235 chr6 100984048 100984270 + 3 NA Intergenic L1ME3A|LINE|L1 -102787 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 393-317 chr6 155477469 155477681 + 3 NA Intergenic L1ME3Cz|LINE|L1 -21736 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 366-428 chr8 33703938 33704087 + 3 NA Intergenic Intergenic -103906 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 350-392 chr5 40163375 40163565 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 111179 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 491-175 chr3 136322025 136322295 + 3 NA intron (NM_000532, intron 10 of 14) L1M4c|LINE|L1 71820 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 582-120 chr5 52358661 52358969 + 3 NA Intergenic Intergenic 350784 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 443-271 chr6 168745458 168745634 + 3 NA Intergenic Intergenic 218836 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 474-114 chr18 444671 444977 + 3 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 55877 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 824-35 chr5 13545553 13545928 + 3 NA Intergenic Intergenic 398740 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 435-121 chr2 57281905 57282122 + 3 NA Intergenic L1MC4|LINE|L1 -625638 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 471-104 chr17 61237012 61237210 + 3 NA intron (NM_001330413, intron 23 of 25) LTR12F|LTR|ERV1 130593 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 661-17 chr12 17818810 17819152 + 3 NA Intergenic Intergenic 145682 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 949-12 chr2 204214704 204215228 + 3 NA Intergenic Intergenic 278218 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 487-302 chr9 11735431 11735670 + 3 NA Intergenic L1MB7|LINE|L1 -957835 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 1361-5 chr2 107120165 107120951 + 3 NA Intergenic L1ME3|LINE|L1 228967 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 341-309 chr21 18145683 18145868 + 3 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -99058 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 418-53 chr12 23522470 23522660 + 3 NA Intergenic L1MEg|LINE|L1 62021 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 375-299 chr4 97335597 97335750 + 3 NA Intergenic Intergenic -31253 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 484-222 chr5 125887552 125887816 + 3 NA Intergenic L1MD1|LINE|L1 -291893 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 476-130 chr2 18714108 18714405 + 3 NA Intergenic Intergenic -124676 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 205-98 chr15 47827444 47827516 + 3 NA intron (NR_120336, intron 3 of 4) (TA)n|Simple_repeat|Simple_repeat 18756 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 865-36 chr5 20049933 20050265 + 3 NA intron (NM_001291956, intron 2 of 14) HAL1ME|LINE|L1 -61899 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 649-96 chr6 55317427 55317805 + 3 NA Intergenic L1MA7|LINE|L1 -9853 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 780-18 chr14 42766042 42766543 + 3 NA Intergenic L1PA15|LINE|L1 1159436 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 459-175 chr3 14270858 14271058 + 3 NA Intergenic L1ME4b|LINE|L1 81610 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 407-36 chr10 90869609 90869855 + 3 NA Intergenic L1M2|LINE|L1 -2220 NM_006413 10556 Hs.139120 NM_006413 ENSG00000148688 RPP30 TSG15 ribonuclease P/MRP subunit p30 protein-coding 532-200 chr5 5994984 5995184 + 3 NA Intergenic L1PA15|LINE|L1 342208 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 496-109 chr16 81961390 81961705 + 3 NA 3' UTR (NM_002661, exon 33 of 33) 3' UTR (NM_002661, exon 33 of 33) 49923 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 650-53 chr2 49092321 49092625 + 3 NA intron (NM_000145, intron 1 of 9) L1ME1|LINE|L1 32870 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 652-47 chr16 10235863 10236317 + 3 NA Intergenic L1ME4a|LINE|L1 -53182 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 594-169 chrX 25783924 25784168 + 3 NA Intergenic Intergenic -354297 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 336-440 chr4 178037106 178037307 + 3 NA Intergenic Intergenic -129270 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 454-150 chr2 63632889 63633133 + 3 NA Intergenic L1MA9|LINE|L1 43860 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 186-114 chr3 189261027 189261102 + 3 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -20470 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 785-6 chr1 96863998 96864450 + 3 NA Intergenic Intergenic 141586 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 1118-23 chr9 5219532 5220191 + 3 NA Intergenic Intergenic -11558 NM_002195 3641 Hs.418506 NM_002195 ENSG00000120211 INSL4 EPIL|PLACENTIN insulin like 4 protein-coding 337-177 chr15 63746045 63746201 + 3 NA intron (NM_003922, intron 12 of 77) L1MB7|LINE|L1 87825 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 800-63 chr8 5208588 5208992 + 3 NA Intergenic Intergenic -213876 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 453-40 chr11 70693986 70694219 + 3 NA intron (NM_012309, intron 14 of 24) intron (NM_012309, intron 14 of 24) -32261 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 480-211 chr4 55243653 55243948 + 3 NA Intergenic L2c|LINE|L2 -102442 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 450-272 chr7 8853987 8854224 + 3 NA Intergenic Intergenic 420496 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 436-157 chr20 995029 995213 + 3 NA intron (NM_001029871, intron 1 of 4) MIRc|SINE|MIR 7190 NM_001029871 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 409-41 chr11 97061686 97061890 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 553363 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 458-216 chr5 178711220 178711481 + 3 NA TTS (NM_001324339) TTS (NM_001324339) 19309 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 522-178 chr3 94683055 94683335 + 3 NA Intergenic L1MC5|LINE|L1 -255068 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 377-370 chr7 45637251 45637429 + 3 NA intron (NM_001281768, intron 5 of 9) L1ME1|LINE|L1 62972 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 283-186 chr17 70061302 70061477 + 3 NA intron (NR_104130, intron 1 of 1) MIR3|SINE|MIR 10118 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 490-132 chr2 8953041 8953346 + 3 NA intron (NR_135600, intron 1 of 12) L1PA16|LINE|L1 50491 NR_135606 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 1065-10 chr3 89970745 89971312 + 3 NA Intergenic MamRep137|DNA|TcMar-Tigger 863407 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 430-260 chr6 58343306 58343472 + 3 NA Intergenic Intergenic -381943 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 671-98 chr8 51480591 51481028 + 3 NA intron (NM_144651, intron 6 of 22) THE1B|LTR|ERVL-MaLR 328636 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 982-15 chr19 36543129 36543652 + 3 NA TTS (NM_001321351) TTS (NM_001321351) -15119 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 556-162 chr4 97324486 97324713 + 3 NA Intergenic Intergenic -42327 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 436-57 chr12 6602671 6602835 + 3 NA intron (NM_001273, intron 2 of 39) intron (NM_001273, intron 2 of 39) 3698 NM_001297553 1108 Hs.162233 NM_001273 ENSG00000111642 CHD4 CHD-4|Mi-2b|Mi2-BETA|SIHIWES chromodomain helicase DNA binding protein 4 protein-coding 503-29 chr10 52862697 52862944 + 3 NA Intergenic Intergenic -91120 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 496-24 chr1 221648371 221648601 + 3 NA Intergenic Intergenic 88414 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 512-20 chr1 218102030 218102283 + 3 NA Intergenic Intergenic 58651 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 648-39 chr14 59928566 59928909 + 3 NA intron (NR_075071, intron 3 of 32) L1PA13|LINE|L1 9024 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 499-41 chr11 45438099 45438395 + 3 NA Intergenic Intergenic 66850 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 683-96 chr9 6334518 6334936 + 3 NA Intergenic L1M4c|LINE|L1 6352 NM_001001874 89882 Hs.351815 NM_033516 ENSG00000170777 TPD52L3 D55|NYDSP25|hD55 TPD52 like 3 protein-coding 511-10 chr1 157018524 157018824 + 3 NA intron (NM_014784, intron 1 of 39) L1ME1|LINE|L1 27068 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 396-102 chr14 29954595 29954882 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -26891 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 437-78 chr14 72285409 72285704 + 3 NA intron (NM_001370288, intron 2 of 16) THE1B|LTR|ERVL-MaLR -231264 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 229-147 chr17 54868165 54868319 + 3 NA Intergenic Intergenic -32449 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 568-162 chr5 98175781 98176061 + 3 NA Intergenic L1MA3|LINE|L1 -14682 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 604-151 chr7 33254463 33254900 + 3 NA intron (NM_198428, intron 5 of 22) L1MA9|LINE|L1 125117 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 311-173 chr16 31322057 31322265 + 3 NA intron (NM_001145808, intron 16 of 29) intron (NM_001145808, intron 16 of 29) -33015 NM_001286375 3687 Hs.248472 NM_000887 ENSG00000140678 ITGAX CD11C|SLEB6 integrin subunit alpha X protein-coding 245-5 chr1 93797234 93797324 + 3 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -21896 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 681-38 chr2 100313920 100314306 + 3 NA intron (NM_198461, intron 1 of 11) L1ME3|LINE|L1 8620 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 530-212 chr5 180210505 180210739 + 3 NA Intergenic Intergenic -1411 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 785-31 chr21 25078240 25078594 + 3 NA Intergenic Intergenic 237867 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 392-112 chr17 60494501 60494796 + 3 NA intron (NM_001282476, intron 1 of 11) intron (NM_001282476, intron 1 of 11) 31592 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 470-154 chr20 33137650 33137919 + 3 NA Intergenic Intergenic -23986 NM_001319164 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 423-142 chr2 139565806 139566045 + 3 NA Intergenic Intergenic 668601 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 832-9 chr14 71305220 71305741 + 3 NA Intergenic Intergenic -14996 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 345-411 chr5 29688836 29688999 + 3 NA Intergenic Intergenic -191643 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 573-158 chr5 141276261 141276472 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 27683 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 662-40 chr19 36536907 36537317 + 3 NA Intergenic Intergenic -8841 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 478-105 chr16 52245428 52245670 + 3 NA Intergenic L1ME3A|LINE|L1 -13015 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 460-305 chr9 82466384 82466660 + 3 NA Intergenic Intergenic 477750 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 703-71 chr5 22290186 22290477 + 3 NA intron (NM_001364104, intron 2 of 13) L1MA8|LINE|L1 -76481 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 587-60 chr17 61967461 61967903 + 3 NA intron (NM_005121, intron 18 of 29) intron (NM_005121, intron 18 of 29) -39700 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 612-80 chr21 18718608 18718962 + 3 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) -32621 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 394-295 chr6 142881042 142881211 + 3 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 64050 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 831-50 chr8 117284609 117284908 + 3 NA Intergenic Intergenic 149763 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 820-51 chr5 165526071 165526500 + 3 NA Intergenic Intergenic 1056006 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 345-551 chr9 29133949 29134110 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 78270 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 376-6 chr1 68243289 68243462 + 3 NA Intergenic Intergenic -10829 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 472-331 chr8 131380633 131380950 + 3 NA Intergenic L2c|LINE|L2 -339882 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 591-115 chr4 96111568 96111930 + 3 NA Intergenic LTR80B|LTR|ERVL -198954 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 472-120 chr17 35496058 35496345 + 3 NA intron (NM_001363830, intron 2 of 4) intron (NM_001363830, intron 2 of 4) -8462 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 586-42 chr12 37799148 37799429 + 3 NA Intergenic ALR/Alpha|Satellite|centr -517486 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 554-221 chrX 99609288 99609613 + 3 NA Intergenic AluJb|SINE|Alu 800823 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 1079 chr14 61870240 61870791 + 3 NA intron (NM_001367656, intron 1 of 7) L1ME1|LINE|L1 -57180 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 460-292 chr8 112511988 112512160 + 3 NA intron (NM_001363185, intron 26 of 66) Tigger1|DNA|TcMar-Tigger -131419 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 362-344 chr5 36492832 36492978 + 3 NA Intergenic Intergenic -113450 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 488-76 chr14 45790053 45790288 + 3 NA Intergenic LTR25-int|LTR|ERV1 -74568 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 551-39 chr12 25288623 25288935 + 3 NA Intergenic L1ME2z|LINE|L1 -37850 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 747-70 chr8 126662747 126663121 + 3 NA Intergenic L1MC1|LINE|L1 -104456 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 442-49 chr12 4371254 4371500 + 3 NA intron (NM_020638, intron 2 of 2) intron (NM_020638, intron 2 of 2) 8335 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 383-63 chr11 103300559 103300739 + 3 NA intron (NM_001377, intron 75 of 88) intron (NM_001377, intron 75 of 88) 191223 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 350-100 chr12 69747628 69747823 + 3 NA intron (NM_175625, intron 1 of 9) intron (NM_175625, intron 1 of 9) 8344 NM_175625 117177 Hs.258209 NM_022456 ENSG00000127328 RAB3IP RABIN3|RABIN8 RAB3A interacting protein protein-coding 444-266 chr8 118393943 118394151 + 3 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -226954 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 426-129 chr2 35835376 35835553 + 3 NA Intergenic Intergenic 364059 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 544-228 chr8 108870919 108871190 + 3 NA Intergenic Intergenic -83460 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 458-24 chr10 76132203 76132476 + 3 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 349578 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 494-197 chr4 34169986 34170174 + 3 NA intron (NR_147184, intron 2 of 3) MER5A|DNA|hAT-Charlie 99667 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 501-135 chr20 48056598 48056866 + 3 NA Intergenic Intergenic -66615 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 449-139 chr2 237939380 237939590 + 3 NA Intergenic L1MC3|LINE|L1 -27460 NR_037904 100533179 Hs.471785 NR_037904 ENSG00000258984 UBE2F-SCLY - UBE2F-SCLY readthrough (NMD candidate) ncRNA 539-185 chr6 145160916 145161149 + 3 NA Intergenic Intergenic 525845 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 513-276 chr8 63861522 63861853 + 3 NA intron (NR_125826, intron 4 of 4) L1MD1|LINE|L1 92257 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 435-240 chr8 86422947 86423161 + 3 NA intron (NM_007013, intron 9 of 24) intron (NM_007013, intron 9 of 24) 80507 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 375-336 chr5 130964719 130964927 + 3 NA Intergenic Intergenic 200433 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 406-121 chr18 64838454 64838687 + 3 NA Intergenic Intergenic -578515 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 479-159 chr4 46783502 46783728 + 3 NA intron (NM_130902, intron 2 of 2) ERVL-B4-int|LTR|ERVL 125630 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 663-58 chr2 123669973 123670399 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 354988 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 535-10 chr1 74866250 74866564 + 3 NA Intergenic L1PREC2|LINE|L1 -132999 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 493-219 chr4 23458455 23458748 + 3 NA Intergenic Intergenic 422691 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 566-105 chr2 226069376 226069710 + 3 NA Intergenic Intergenic -73251 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 466-241 chr7 11903399 11903600 + 3 NA Intergenic L1MA6|LINE|L1 -71301 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 203-245 chr9 29122033 29122122 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 90222 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 555-47 chr13 28013215 28013452 + 3 NA intron (NM_004119, intron 23 of 23) MIRb|SINE|MIR -24696 NM_001105577 646625 Hs.705356 NM_001105577 ENSG00000183463 URAD PRHOXNB ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase protein-coding 832-29 chr4 48211492 48212006 + 3 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) 58089 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 571-94 chr20 50519626 50519910 + 3 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 9385 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 473-283 chr8 122983320 122983569 + 3 NA Intergenic Intergenic 42328 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 435-175 chr4 133538441 133538739 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 389296 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 415-147 chr2 228968905 228969257 + 3 NA Intergenic L1M6|LINE|L1 263011 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 782-39 chr20 60651659 60652150 + 3 NA Intergenic Intergenic 87342 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 672-89 chr5 119797672 119797950 + 3 NA Intergenic L2|LINE|L2 168252 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 575-11 chr1 177324633 177324971 + 3 NA Intergenic AluSx3|SINE|Alu -26784 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 284-450 chrX 28632541 28632767 + 3 NA intron (NM_014271, intron 1 of 10) Charlie1b|DNA|hAT-Charlie 45208 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 626-105 chr4 100861928 100862165 + 3 NA Intergenic L1PBb|LINE|L1 -186933 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 456-155 chr2 70858098 70858294 + 3 NA Intergenic L1M1|LINE|L1 -22380 NM_015717 50489 Hs.199731 NM_015717 ENSG00000116031 CD207 CLEC4K CD207 molecule protein-coding 831-36 chr4 76350753 76351277 + 3 NA exon (NM_001042784, exon 17 of 24) exon (NM_001042784, exon 17 of 24) 44989 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 802-43 chr3 110285689 110286210 + 3 NA Intergenic L1M4|LINE|L1 683121 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 394-73 chr12 9833108 9833268 + 3 NA intron (NM_001291823, intron 2 of 2) intron (NM_001291823, intron 2 of 2) 5707 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 246-392 chr8 55511688 55511878 + 3 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 9195 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 497-297 chr8 141887561 141887899 + 3 NA Intergenic AluSz|SINE|Alu -101417 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 548-129 chr2 214525112 214525434 + 3 NA non-coding (NR_047698, exon 2 of 4) non-coding (NR_047698, exon 2 of 4) 15091 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 621-81 chr3 191453198 191453526 + 3 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) -7801 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 485-71 chr13 110080037 110080270 + 3 NA Intergenic Intergenic 26868 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 602-39 chr15 60274710 60274965 + 3 NA Intergenic Intergenic 123149 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 250-52 chr10 104345166 104345346 + 3 NA Intergenic Intergenic -6791 NM_001272013 85450 Hs.523252 NM_033397 ENSG00000148841 ITPRIP DANGER|KIAA1754|bA127L20|bA127L20.2 inositol 1,4,5-trisphosphate receptor interacting protein protein-coding 876-31 chr5 85734062 85734663 + 3 NA Intergenic L1P2|LINE|L1 -548082 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 336-538 chr8 75197807 75197930 + 3 NA Intergenic L1MA4A|LINE|L1 80613 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 1034-4 chr1 237159406 237160169 + 3 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 117603 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 920-6 chr12 14096394 14096950 + 3 NA Intergenic L1PA17|LINE|L1 -116316 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 679-112 chr8 134200875 134201215 + 3 NA Intergenic Intergenic 314549 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 656-48 chr18 60427846 60428280 + 3 NA Intergenic Intergenic -55288 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 991-25 chr8 128431379 128431772 + 3 NA intron (NR_121672, intron 2 of 7) MER20|DNA|hAT-Charlie 133104 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 954-24 chr2 32886457 32886961 + 3 NA intron (NR_027099, intron 7 of 10) LTR12C|LTR|ERV1 -40418 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 387-143 chr17 72450722 72450958 + 3 NA intron (NR_036488, intron 1 of 3) L1MC4|LINE|L1 108029 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 896-32 chr6 155381473 155381905 + 3 NA Intergenic L1MC5a|LINE|L1 -67205 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 482-172 chr3 159374826 159375149 + 3 NA intron (NM_001197108, intron 1 of 6) MER33|DNA|hAT-Charlie 92341 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 359-422 chr6 49229906 49230090 + 3 NA Intergenic L1MA2|LINE|L1 233255 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 561 chr1 5606434 5606700 + 3 NA Intergenic L1ME2|LINE|L1 256174 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 493-58 chr12 33210080 33210333 + 3 NA Intergenic AluSq10|SINE|Alu 229613 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 417-77 chr14 38796178 38796369 + 3 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -86323 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 615-14 chr11 10219332 10219671 + 3 NA intron (NM_030962, intron 1 of 39) THE1B-int|LTR|ERVL-MaLR 74706 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 505-7 chr1 85809090 85809273 + 3 NA intron (NM_152890, intron 47 of 59) LTR8B|LTR|ERV1 -100748 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 438-206 chr5 5802648 5802800 + 3 NA Intergenic Intergenic 380047 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 923 chr1 106630816 106631272 + 3 NA Intergenic Intergenic -187195 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 710-58 chr22_KI270736v1_random 172889 173369 + 3 NA NA AluYj4|SINE|Alu NA NA 455-224 chr5 78294951 78295341 + 3 NA promoter-TSS (NM_001271769) promoter-TSS (NM_001271769) -391 NM_003664 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 804-45 chr4 26687866 26688333 + 3 NA intron (NM_001292054, intron 9 of 17) intron (NM_001292054, intron 9 of 17) 104015 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 416-99 chr12 111376695 111376936 + 3 NA Intergenic L1ME1|LINE|L1 -7720 NM_001177996 144717 Hs.173088 NM_144671 ENSG00000198324 PHETA1 FAM109A|IPIP27A|SES1 PH domain containing endocytic trafficking adaptor 1 protein-coding 410-126 chr2 14798318 14798523 + 3 NA Intergenic L1ME1|LINE|L1 165703 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 673-125 chr8 135293066 135293475 + 3 NA intron (NR_120395, intron 3 of 5) L2c|LINE|L2 59139 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 326-307 chr21 19259622 19259853 + 3 NA Intergenic Intergenic -499925 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 719-16 chr12 21906602 21907120 + 3 NA intron (NM_005691, intron 9 of 37) intron (NM_005691, intron 9 of 37) 29833 NM_020297 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 487-18 chr1 118359461 118359670 + 3 NA Intergenic L1ME2|LINE|L1 -174337 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 516-31 chr11 40608412 40608781 + 3 NA intron (NM_020929, intron 2 of 4) L1MB1|LINE|L1 -315466 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 658-2 chr1 36942416 36942799 + 3 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 91908 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 510-14 chr1 191956022 191956329 + 3 NA Intergenic Intergenic -202287 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 619-17 chr10 35718851 35719154 + 3 NA Intergenic Intergenic -59300 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 462-299 chr9 91930383 91930606 + 3 NA intron (NM_001318204, intron 1 of 7) LTR10B2|LTR|ERV1 19734 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 871-37 chr8 79815851 79816245 + 3 NA intron (NR_110954, intron 3 of 5) MER5A|DNA|hAT-Charlie 47906 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 401-243 chr4 161070804 161071022 + 3 NA Intergenic Intergenic -951820 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 543-143 chr2 237634566 237634866 + 3 NA intron (NM_001137550, intron 1 of 23) HAL1|LINE|L1 7129 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 744-53 chr5 13065134 13065493 + 3 NA Intergenic Intergenic -32427 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 434-312 chr9 28748882 28749125 + 3 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -29698 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 737-3 chr1 96060947 96061457 + 3 NA Intergenic Intergenic 69134 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 494-126 chr2 57213405 57213654 + 3 NA Intergenic Intergenic -694122 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 445-147 chr2 238719601 238719874 + 3 NA Intergenic Intergenic 128170 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 618-66 chr2 143884542 143884761 + 3 NA Intergenic Intergenic -52416 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 476-245 chr6 141114444 141114639 + 3 NA Intergenic Intergenic 430727 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 509-17 chr1 232830960 232831189 + 3 NA Intergenic MER92B|LTR|ERV1 26182 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 464-116 chr2 49550087 49550302 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -395667 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 799-45 chr5 155397071 155397534 + 3 NA Intergenic Intergenic 383547 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 851-42 chr8 46394448 46394978 + 3 NA Intergenic ALR/Alpha|Satellite|centr 222930 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 230-16 chr1 103800170 103800328 + 3 NA Intergenic L1ME2|LINE|L1 50408 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 250-76 chr11 101957891 101957974 + 3 NA intron (NM_001363543, intron 5 of 11) intron (NM_001363543, intron 5 of 11) -41410 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 514-50 chr11 112606784 112607040 + 3 NA Intergenic Intergenic -51110 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 414-304 chr7 41973313 41973482 + 3 NA intron (NM_000168, intron 12 of 14) intron (NM_000168, intron 12 of 14) 263812 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 802-53 chr5 27074169 27074601 + 3 NA Intergenic L1PA14|LINE|L1 -35799 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 711-59 chr5 96249625 96249904 + 3 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 170626 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 1287 chr14 71863697 71864427 + 3 NA Intergenic L2c|LINE|L2 -68109 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 696-92 chr6 164432377 164432763 + 3 NA Intergenic MER110A|LTR|ERV1 389493 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 205-289 chr8 139304385 139304459 + 3 NA Intergenic L1ME1|LINE|L1 -390381 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 455-96 chr17 68825900 68826122 + 3 NA Intergenic L1MD3|LINE|L1 129381 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 486-146 chr2 103927857 103928177 + 3 NA Intergenic Intergenic 480315 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 401-210 chr3 88869629 88869813 + 3 NA Intergenic Intergenic -237900 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 592-84 chr2 97708517 97708941 + 3 NA Intergenic Intergenic -4839 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 688-35 chr13 26727564 26727891 + 3 NA Intergenic Intergenic 33059 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 364-288 chr3 152915936 152916205 + 3 NA Intergenic MIRb|SINE|MIR 80939 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 491-242 chr7 28046344 28046639 + 3 NA intron (NM_175061, intron 1 of 4) L1ME3G|LINE|L1 -133966 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 494-261 chr6 170005852 170006051 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 43328 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 808-3 chr1 104752518 104752866 + 3 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 679669 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 437-206 chr5 12311406 12311724 + 3 NA Intergenic Intergenic -263292 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 409-233 chr4 158461492 158461756 + 3 NA Intergenic Intergenic -60090 NM_001363776 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 461-282 chr8 136063644 136063826 + 3 NA Intergenic L1PA16|LINE|L1 -467063 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 437-197 chr4 135648693 135648911 + 3 NA Intergenic Intergenic 239291 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 968-29 chr8 113729841 113730361 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -293162 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 483-214 chr5 118117150 118117439 + 3 NA intron (NR_104997, intron 2 of 2) L2a|LINE|L2 -165280 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 479-161 chr4 59385425 59385649 + 3 NA Intergenic Intergenic 371964 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 255-209 chr2 143219428 143219529 + 3 NA intron (NM_018460, intron 4 of 13) L1ME5|LINE|L1 90059 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 375-184 chr18 70246518 70246704 + 3 NA Intergenic HAL1|LINE|L1 -40924 NM_173630 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 578-111 chr3 42372009 42372321 + 3 NA Intergenic Intergenic 38445 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 913-21 chr2 215874207 215874706 + 3 NA Intergenic L1ME3G|LINE|L1 -30920 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 494-115 chr19 43907065 43907349 + 3 NA Intergenic L1M4|LINE|L1 -5404 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 507-31 chr10 54229102 54229341 + 3 NA intron (NM_001354411, intron 9 of 34) Charlie7|DNA|hAT-Charlie -257009 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 607-79 chr2 114818495 114818869 + 3 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 14866 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 950-2 chr1 113443879 113444383 + 3 NA intron (NM_001142782, intron 1 of 20) L1M4c|LINE|L1 53616 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 469-174 chr3 34701427 34701655 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR 692482 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 245-113 chr13 61820685 61820800 + 3 NA Intergenic Intergenic 208806 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 478-137 chr2 56367663 56367902 + 3 NA intron (NM_001348515, intron 3 of 3) intron (NM_001348515, intron 3 of 3) -182012 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 484-78 chr15 95186527 95186817 + 3 NA Intergenic Intergenic 140428 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 419-110 chr17 17914898 17915199 + 3 NA intron (NM_001288787, intron 1 of 13) intron (NM_001288787, intron 1 of 13) 57352 NM_001350331 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 496-287 chr8 87365847 87366173 + 3 NA intron (NM_173538, intron 10 of 10) LTR78|LTR|ERV1 499595 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1081-7 chr19 27683601 27684205 + 3 NA Intergenic ALR/Alpha|Satellite|centr -109528 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 401-282 chr6 61041952 61042205 + 3 NA Intergenic SATR1|Satellite|Satellite -532052 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 565-190 chr9 30913977 30914267 + 3 NA Intergenic Intergenic 467368 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 498-75 chr13 103679082 103679385 + 3 NA Intergenic Intergenic 254033 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 506-58 chr11 85564399 85564592 + 3 NA intron (NM_001142699, intron 3 of 27) L1ME1|LINE|L1 62775 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 334-240 chr19 43862290 43862465 + 3 NA Intergenic L1MA5A|LINE|L1 17759 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 764-71 chr8 137428661 137428979 + 3 NA Intergenic Intergenic -15232 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 645-73 chr22 33259579 33259837 + 3 NA Intergenic Intergenic 151179 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 624-16 chr10 58010438 58010678 + 3 NA Intergenic Intergenic 257336 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 533-208 chr7 579335 579564 + 3 NA intron (NM_001164760, intron 8 of 10) intron (NM_001164760, intron 8 of 10) 17491 NR_132384 101927000 Hs.551793 NR_132384 ENSG00000229380 LOC101927000 - uncharacterized LOC101927000 ncRNA 396-74 chr11 94068004 94068162 + 3 NA intron (NM_001098672, intron 5 of 19) L2c|LINE|L2 46729 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 1444 chr14 81412073 81412970 + 3 NA intron (NM_001366850, intron 2 of 7) L1MB3|LINE|L1 15254 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 757-37 chr3 15889802 15890216 + 3 NA Intergenic Intergenic 16238 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 447-132 chr2 130746295 130746483 + 3 NA Intergenic HAL1|LINE|L1 -9151 NM_001105193 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 575-110 chr22 22035854 22036233 + 3 NA intron (NR_135291, intron 1 of 6) intron (NR_135291, intron 1 of 6) 7891 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 527-284 chr9 105099307 105099510 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -145197 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 345-83 chr10 131925329 131925560 + 3 NA intron (NM_001291310, intron 3 of 9) L1MB7|LINE|L1 24436 NR_033191 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 467-177 chr3 56152796 56153093 + 3 NA intron (NR_132749, intron 4 of 17) intron (NR_132749, intron 4 of 17) -300350 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 693-53 chr2 43426420 43426801 + 3 NA intron (NM_001083953, intron 28 of 37) intron (NM_001083953, intron 28 of 37) 169364 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 413-275 chr7 41261204 41261463 + 3 NA Intergenic L1MC1|LINE|L1 159729 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 472-192 chr21 19630358 19630562 + 3 NA Intergenic Intergenic 269295 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 516-128 chr2 101325894 101326173 + 3 NA Intergenic L1MC1|LINE|L1 16583 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 329-421 chr4 107742760 107742934 + 3 NA Intergenic AluJb|SINE|Alu -22613 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 635-76 chr4 42897250 42897615 + 3 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 4166 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 549-187 chr6 151138120 151138384 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 35577 NR_162145 113219461 NR_162145 MIR12131 - microRNA 12131 ncRNA 423-42 chr10 127382809 127383117 + 3 NA intron (NM_001290223, intron 37 of 51) intron (NM_001290223, intron 37 of 51) -166386 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 548-87 chr16 77486171 77486476 + 3 NA Intergenic Intergenic -51289 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 404-129 chr17 61251756 61251993 + 3 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 115830 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 709-15 chr11 81276167 81276670 + 3 NA Intergenic MER61-int|LTR|ERV1 -513615 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 550-166 chr4 96956525 96956759 + 3 NA Intergenic LTR81B|LTR|Gypsy -410284 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 566-154 chr5 38328722 38329093 + 3 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -37921 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 734-82 chrUn_GL000216v2 67249 67684 + 3 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 233-138 chr18 21374507 21374630 + 3 NA intron (NM_001142966, intron 2 of 32) intron (NM_001142966, intron 2 of 32) 132326 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 500-17 chr1 213731561 213731786 + 3 NA Intergenic L1MA4|LINE|L1 -193076 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 499-206 chr5 82482678 82482908 + 3 NA Intergenic L1MEj|LINE|L1 203331 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 696-82 chr4 87870371 87870771 + 3 NA Intergenic Intergenic 35868 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 653-48 chr16 86656104 86656571 + 3 NA Intergenic L1PB3|LINE|L1 65622 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LINC02189 - long intergenic non-protein coding RNA 2189 ncRNA 536-2 chr1 34050170 34050367 + 3 NA intron (NM_052896, intron 2 of 69) ERVL-B4-int|LTR|ERVL 115006 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 499-37 chr11 2349362 2349550 + 3 NA intron (NR_108080, intron 1 of 2) MSTB-int|LTR|ERVL-MaLR -26721 NM_001297649 975 Hs.54457 NM_004356 ENSG00000110651 CD81 CVID6|S5.7|TAPA1|TSPAN28 CD81 molecule protein-coding 1032-16 chr5 35272865 35273564 + 3 NA Intergenic Intergenic -42727 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 419-90 chr14 53846487 53846761 + 3 NA Intergenic Intergenic 101860 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 510-44 chr11 48222056 48222309 + 3 NA Intergenic Intergenic 5372 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 954-44 chr7 18065855 18066455 + 3 NA Intergenic Intergenic -20670 NM_001321871 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 869-20 chr16 27249505 27249835 + 3 NA intron (NM_145080, intron 2 of 7) L1ME1|LINE|L1 -18535 NR_037184 400512 Hs.434412 NR_037184 ENSG00000245888 NSMCE1-DT - NSMCE1 divergent transcript ncRNA 1511 chr10 38511779 38512514 + 3 NA Intergenic Intergenic 84000 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 216-160 chr2 21643088 21643167 + 3 NA Intergenic MIRb|SINE|MIR 67525 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 392-135 chr2 6422085 6422279 + 3 NA Intergenic Intergenic -46760 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 431-163 chr20 45711438 45711700 + 3 NA Intergenic L1MB1|LINE|L1 -6389 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 580-167 chr6 139850413 139850773 + 3 NA intron (NR_038399, intron 1 of 2) HAL1|LINE|L1 -4257 NR_138541 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 477-39 chr10 64779629 64779823 + 3 NA Intergenic LTR104_Mam|LTR|Gypsy -45802 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 436-62 chr12 32601596 32601848 + 3 NA intron (NM_001370297, intron 4 of 14) intron (NM_001370297, intron 4 of 14) 67429 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 424-12 chr1 164728485 164728714 + 3 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 46042 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 697-79 chr9 91768245 91768671 + 3 NA intron (NM_001318204, intron 2 of 7) intron (NM_001318204, intron 2 of 7) -132113 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 461-79 chr14 79982815 79983136 + 3 NA Intergenic L1ME2z|LINE|L1 -228444 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 519-90 chr19 40010444 40010807 + 3 NA intron (NM_178544, intron 6 of 6) L1ME1|LINE|L1 13565 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 531-253 chr8 135032713 135032974 + 3 NA Intergenic L1PA13|LINE|L1 182908 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 672-111 chr8 110500502 110500880 + 3 NA Intergenic L1MCa|LINE|L1 -524920 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 642-11 chr10 61224416 61224734 + 3 NA Intergenic L1MCb|LINE|L1 208300 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 590-10 chr1 170550531 170550778 + 3 NA intron (NM_001320252, intron 6 of 6) intron (NM_001320252, intron 6 of 6) -18045 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 473-129 chr2 48955913 48956170 + 3 NA Intergenic MER115|DNA|hAT-Tip100 -103562 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 975-4 chr11 11643682 11644044 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 12859 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 300-67 chr11 50097456 50097671 + 3 NA Intergenic AluJb|SINE|Alu 64689 NR_160275 403257 Hs.554533 NM_001005513 ENSG00000260811 OR4C45 - olfactory receptor family 4 subfamily C member 45 (gene/pseudogene) protein-coding 544-99 chr18 78351128 78351450 + 3 NA Intergenic Intergenic -357562 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 1047-4 chr11 79577832 79578491 + 3 NA Intergenic Intergenic -137131 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 269-252 chr3 71164610 71164766 + 3 NA intron (NR_146142, intron 6 of 19) intron (NR_146142, intron 6 of 19) -32491 NM_001349342 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 496-261 chr7 52178975 52179316 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -785889 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 731-34 chr17 34923499 34923870 + 3 NA Intergenic Intergenic 37776 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 490-103 chr16 17583832 17584048 + 3 NA Intergenic Intergenic -112980 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 465-108 chr17 74088994 74089257 + 3 NA Intergenic Intergenic -114553 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 483-219 chr5 155698805 155699094 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -627808 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 576-179 chr9 10735557 10735845 + 3 NA Intergenic Intergenic 122495 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 372-456 chr7 57301766 57301945 + 3 NA Intergenic L2a|LINE|L2 -79681 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 504-189 chr4 72219471 72219724 + 3 NA Intergenic L1MEg|LINE|L1 180465 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 445-47 chr12 14470783 14471020 + 3 NA intron (NM_181352, intron 10 of 14) L1M4a1|LINE|L1 85620 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 451-52 chr13 54376034 54376199 + 3 NA Intergenic Intergenic -64068 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 481-220 chr4 64386502 64386707 + 3 NA intron (NM_001363796, intron 1 of 11) intron (NM_001363796, intron 1 of 11) 22846 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 822-7 chr10 66040779 66041465 + 3 NA intron (NM_001127384, intron 15 of 17) L1MC4a|LINE|L1 469697 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 521-49 chr11 74564540 74564768 + 3 NA Intergenic Intergenic -27928 NR_046409 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 383-245 chr3 42208919 42209241 + 3 NA intron (NM_001349247, intron 13 of 16) intron (NM_001349247, intron 13 of 16) 48887 NM_014965 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 545-70 chr14 57013189 57013476 + 3 NA Intergenic L1MA2|LINE|L1 200174 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 437-124 chr2 24162589 24162892 + 3 NA intron (NM_001145710, intron 8 of 10) L1MB8|LINE|L1 -12313 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 991-9 chr14 44557819 44558348 + 3 NA Intergenic Intergenic 50674 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 896-24 chr4 33915377 33915911 + 3 NA intron (NR_125902, intron 4 of 4) MER66-int|LTR|ERV1 124249 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 671-30 chr14 60674265 60674647 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -24979 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 442-31 chr10 70033436 70033696 + 3 NA Intergenic Intergenic -19280 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 473-234 chr5 156013416 156013631 + 3 NA Intergenic L1ME4a|LINE|L1 -313234 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 525-249 chr7 112271632 112271940 + 3 NA intron (NM_021994, intron 1 of 11) intron (NM_021994, intron 1 of 11) 65091 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 420-29 chr1 237468522 237468732 + 3 NA intron (NM_001035, intron 16 of 104) intron (NM_001035, intron 16 of 104) -2492 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 576-175 chr8 131141300 131141502 + 3 NA Intergenic Intergenic -100492 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 591-2 chr1 35653506 35653765 + 3 NA Intergenic Intergenic -12109 NM_001199779 5690 Hs.471441 NM_002794 ENSG00000126067 PSMB2 HC7-I proteasome subunit beta 2 protein-coding 541-197 chr5 153718440 153718787 + 3 NA intron (NM_000827, intron 11 of 15) MIRb|SINE|MIR 180374 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 697-63 chr6 41700764 41701114 + 3 NA intron (NM_001167827, intron 1 of 8) intron (NM_001167827, intron 1 of 8) 32671 NR_162107 113218489 NR_162107 MIR10398 - microRNA 10398 ncRNA 794-41 chr7 69011587 69011965 + 3 NA Intergenic MER4A|LTR|ERV1 585848 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 767-25 chr2 106973795 106974321 + 3 NA Intergenic Intergenic -86949 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 829-8 chr10 66251775 66252168 + 3 NA intron (NM_001127384, intron 13 of 17) MIR|SINE|MIR -674065 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 550-241 chr9 12487759 12488081 + 3 NA Intergenic L1MA2|LINE|L1 -205465 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 585-30 chr12 79572627 79572905 + 3 NA Intergenic L1MA4A|LINE|L1 117814 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 518-22 chr10 26228293 26228596 + 3 NA intron (NM_000818, intron 6 of 16) intron (NM_000818, intron 6 of 16) 11670 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 326-416 chr5 76289149 76289326 + 3 NA intron (NM_014979, intron 6 of 12) intron (NM_014979, intron 6 of 12) -114048 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 553-127 chr2 128911602 128911901 + 3 NA Intergenic L1MC3|LINE|L1 47151 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 443-71 chr12 79472272 79472504 + 3 NA Intergenic SATR1|Satellite|Satellite 53131 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 438-84 chr15 98825888 98826040 + 3 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 41538 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 576-73 chr18 59403428 59403696 + 3 NA Intergenic L1ME3G|LINE|L1 -44297 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 589-143 chr6 158833614 158833871 + 3 NA Intergenic AluSz|SINE|Alu -14374 NM_001111077 7430 Hs.487027 NM_003379 ENSG00000092820 EZR CVIL|CVL|HEL-S-105|VIL2 ezrin protein-coding 390-324 chr6 54798662 54798823 + 3 NA Intergenic Intergenic -48029 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 619-100 chr5 19998235 19998659 + 3 NA intron (NM_001291956, intron 2 of 14) L2c|LINE|L2 -10247 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 787-17 chr2 29838500 29839087 + 3 NA intron (NM_004304, intron 1 of 28) L1ME2|LINE|L1 82793 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 512-252 chr7 26572400 26572584 + 3 NA Intergenic Intergenic -33667 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 717-79 chr7 111012053 111012492 + 3 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -78734 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 494-286 chr8 77925569 77925766 + 3 NA Intergenic L1PA15|LINE|L1 474970 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 442-276 chr7 95879264 95879446 + 3 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 106849 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 398-22 chr1 195069347 195069568 + 3 NA Intergenic Intergenic 1019258 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 525-26 chr10 53965531 53965831 + 3 NA intron (NM_001354411, intron 22 of 34) Tigger10|DNA|TcMar-Tigger -520549 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 767-2 chr1 158811567 158811885 + 3 NA Intergenic Intergenic -19625 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 673-93 chr5 8629215 8629554 + 3 NA Intergenic Intergenic 168459 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 671-105 chr8 141033469 141033866 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -31588 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 270-381 chr8 68559095 68559220 + 3 NA intron (NR_146186, intron 7 of 12) L2|LINE|L2 -227666 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 606-76 chr2 16932048 16932428 + 3 NA Intergenic Intergenic -266404 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 320-173 chr15 67649247 67649444 + 3 NA intron (NM_001206804, intron 11 of 21) L1MB7|LINE|L1 100251 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 542-116 chr20 21010954 21011233 + 3 NA Intergenic HAL1b|LINE|L1 95265 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 492-231 chr6 101031523 101031778 + 3 NA Intergenic MER61-int|LTR|ERV1 -150278 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 446-134 chr19 15678487 15678761 + 3 NA intron (NM_023944, intron 3 of 12) intron (NM_023944, intron 3 of 12) 5537 NR_117085 66002 Hs.131459 NM_023944 ENSG00000186204 CYP4F12 CYPIVF12|F22329_1 cytochrome P450 family 4 subfamily F member 12 protein-coding 273-61 chr10 88003291 88003427 + 3 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 139734 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 570-214 chrX 69942715 69943050 + 3 NA intron (NM_001005609, intron 1 of 7) L1MA3|LINE|L1 -79975 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 474-190 chr3 190237228 190237427 + 3 NA Intergenic MER34C_|LTR|ERV1 85119 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 459-106 chr17 13900531 13900827 + 3 NA Intergenic Intergenic -123819 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 436-234 chr5 25043063 25043275 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 147487 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 637-35 chr14 41369481 41369979 + 3 NA Intergenic L1M5|LINE|L1 -237126 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 722-47 chr20 55673412 55673805 + 3 NA Intergenic Intergenic -246411 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 1083-6 chr14 42801477 42802033 + 3 NA Intergenic Intergenic 1194899 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 532-242 chr7 37587609 37587818 + 3 NA Intergenic L1MB7|LINE|L1 -96053 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 1160-2 chr16 48645255 48645920 + 3 NA Intergenic L1MA5A|LINE|L1 -35407 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 363-221 chr2 104739489 104739769 + 3 NA Intergenic Intergenic 18090 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 304-121 chr12 105593849 105594055 + 3 NA Intergenic L2b|LINE|L2 -110251 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 721-40 chr2 217136762 217137158 + 3 NA Intergenic L1MB8|LINE|L1 -145773 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 497-274 chr8 77058134 77058455 + 3 NA Intergenic Intergenic -57250 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 379-368 chr8 138710613 138710797 + 3 NA intron (NM_152888, intron 30 of 64) MIR|SINE|MIR 203336 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 673-27 chr12 99132648 99132996 + 3 NA intron (NM_152788, intron 15 of 25) MIRb|SINE|MIR 21944 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 532-87 chr16 62491342 62491658 + 3 NA Intergenic L1MC3|LINE|L1 -455062 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 622-57 chr2 48949927 48950373 + 3 NA Intergenic Intergenic -109453 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 456-254 chr5 87596547 87596776 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -65381 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 441-216 chr6 8978056 8978272 + 3 NA Intergenic L1MCc|LINE|L1 325955 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 820-12 chr12 38002655 38003159 + 3 NA Intergenic ALR/Alpha|Satellite|centr -313867 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 452-126 chr2 62615769 62615946 + 3 NA Intergenic AluSq|SINE|Alu -58021 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 751-39 chr20 11574041 11574575 + 3 NA Intergenic Intergenic 296407 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 526-194 chr5 2543279 2543564 + 3 NA Intergenic Charlie5|DNA|hAT-Charlie -169170 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 280-10 chr1 75090778 75090989 + 3 NA Intergenic Intergenic -37551 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 474-16 chr1 173052698 173052912 + 3 NA Intergenic Intergenic -1842 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 267-445 chr9 28766913 28767057 + 3 NA intron (NM_001354574, intron 2 of 5) L1MA9|LINE|L1 -47680 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 630-67 chr2 192016093 192016597 + 3 NA intron (NM_001305134, intron 5 of 9) intron (NM_001305134, intron 5 of 9) -169257 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 749-18 chr10 100112252 100112654 + 3 NA Intergenic Intergenic -30584 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 318-313 chr20 4564151 4564366 + 3 NA Intergenic Intergenic -122198 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 466-148 chr2 164091313 164091492 + 3 NA Intergenic Intergenic -355394 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 397-133 chr19 28109125 28109348 + 3 NA Intergenic L1PB3|LINE|L1 -315296 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 663-55 chr2 14821389 14821650 + 3 NA Intergenic Intergenic 188802 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 474-264 chr7 40946481 40946722 + 3 NA Intergenic L1M4|LINE|L1 33338 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 276-26 chr1 185980428 185980541 + 3 NA intron (NM_031935, intron 16 of 106) MER20B|DNA|hAT-Charlie 246093 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 673-107 chr7 44837050 44837299 + 3 NA intron (NM_201517, intron 2 of 3) AluSx1|SINE|Alu 10952 NM_012412 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 748-73 chr5 106474667 106475031 + 3 NA Intergenic Intergenic 536165 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 802-45 chr3 139473589 139473966 + 3 NA intron (NM_004164, intron 1 of 3) intron (NM_004164, intron 1 of 3) 2739 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 461-170 chr3 56212689 56212947 + 3 NA intron (NR_132749, intron 3 of 17) L1PB1|LINE|L1 255649 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 498-26 chr10 43461920 43462236 + 3 NA intron (NM_001355446, intron 2 of 4) L2|LINE|L2 24967 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 834-36 chr5 58005195 58005551 + 3 NA Intergenic L1MC5|LINE|L1 -106211 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 627-116 chr8 80383036 80383344 + 3 NA Intergenic L2b|LINE|L2 -102403 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 295-205 chr2 43538329 43538495 + 3 NA intron (NM_001083953, intron 21 of 37) intron (NM_001083953, intron 21 of 37) 57562 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 385-243 chr3 85669753 85669890 + 3 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -56661 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 717-86 chr8 132491522 132491828 + 3 NA Intergenic Intergenic -10580 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 876-3 chr1 163924684 163925096 + 3 NA Intergenic L1ME3A|LINE|L1 -501699 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 475-119 chr19 58127927 58128140 + 3 NA exon (NM_024620, exon 4 of 4) exon (NM_024620, exon 4 of 4) -9607 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 455-168 chr3 101215029 101215216 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 105453 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 614-48 chr19 53598361 53598583 + 3 NA Intergenic Intergenic 5025 NR_002938 284379 Hs.631571 NR_002938 ENSG00000268864 LOC284379 - solute carrier family 7 member 3 pseudogene pseudo 312-191 chr17 70796453 70796595 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 405655 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 436-242 chr5 50985545 50985765 + 3 NA Intergenic Intergenic -15468 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 320-70 chr10 114558588 114558822 + 3 NA intron (NM_001352440, intron 4 of 20) intron (NM_001352440, intron 4 of 20) -31792 NM_001322889 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 684-93 chr5 30828204 30828640 + 3 NA Intergenic MER90|LTR|ERV1 -365264 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 1195-3 chr12 23298847 23299273 + 3 NA Intergenic Intergenic 123424 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 242-446 chrX 77219292 77219436 + 3 NA Intergenic L1MD2|LINE|L1 -204832 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 341-350 chr3 148592480 148592668 + 3 NA Intergenic L1MC1|LINE|L1 -105297 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 1055-3 chr11 21629300 21629868 + 3 NA Intergenic MER21C|LTR|ERVL -563501 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 706-59 chr5 101139422 101139749 + 3 NA Intergenic L1PA4|LINE|L1 -236303 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 569-14 chr1 184292945 184293314 + 3 NA Intergenic Intergenic -93900 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 449-130 chr2 128202501 128202659 + 3 NA Intergenic AluJr4|SINE|Alu 111380 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 353-538 chr8 131535204 131535429 + 3 NA Intergenic Intergenic -368777 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 1213-16 chr9 84507696 84508493 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -139367 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 300-3 chr1 17152124 17152329 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -32775 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 443-123 chr17 68632629 68632896 + 3 NA intron (NR_110825, intron 1 of 4) intron (NR_110825, intron 1 of 4) 4608 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 456-54 chr12 18372272 18372439 + 3 NA intron (NM_001288774, intron 13 of 32) L2c|LINE|L2 110815 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 602-6 chr1 188462347 188462740 + 3 NA Intergenic Intergenic 1018915 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 391-330 chr7 70930705 70930875 + 3 NA Intergenic AluJr|SINE|Alu -201354 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 252-466 chrX 125453820 125454002 + 3 NA Intergenic Intergenic 134040 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 668-66 chr3 82663041 82663545 + 3 NA Intergenic Intergenic 677151 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 534-139 chr20 9028750 9029039 + 3 NA Intergenic Tigger18a|DNA|TcMar-Tigger -40160 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 435-203 chr5 116476275 116476432 + 3 NA intron (NM_001300780, intron 15 of 19) intron (NM_001300780, intron 15 of 19) 28855 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 496-111 chr17 28021335 28021666 + 3 NA Intergenic Intergenic -21177 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 743-20 chr13 111845155 111845646 + 3 NA Intergenic Intergenic -47978 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 423-103 chr17 69976608 69976859 + 3 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 15026 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 516-242 chr7 132038566 132038829 + 3 NA Intergenic L1ME4a|LINE|L1 128477 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 603-79 chr2 14730353 14730600 + 3 NA Intergenic Intergenic 97759 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 621-139 chr9 11242986 11243208 + 3 NA Intergenic L1P4|LINE|L1 629891 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 215-258 chr5 67030158 67030280 + 3 NA intron (NM_001297651, intron 1 of 25) intron (NM_001297651, intron 1 of 25) 25564 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 613-141 chr8 136339008 136339324 + 3 NA Intergenic L1ME2|LINE|L1 -191632 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 420-145 chr2 110648273 110648567 + 3 NA intron (NM_001278616, intron 18 of 23) L1MC2|LINE|L1 9829 NR_132975 106635550 NR_132975 SNORD132 - small nucleolar RNA, C/D box 132 snoRNA 1385-5 chr5 10929309 10930396 + 3 NA Intergenic L1MEg|LINE|L1 -168618 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 367-264 chr22 35170323 35170539 + 3 NA intron (NR_126356, intron 4 of 5) intron (NR_126356, intron 4 of 5) 60625 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 478-189 chr3 81366451 81366730 + 3 NA Intergenic MER101|LTR|ERV1 372722 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 521-100 chr17 33629840 33630141 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -96230 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 397-248 chr5 39254322 39254492 + 3 NA intron (NM_001243093, intron 1 of 18) L1PA12|LINE|L1 16242 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 446-274 chr7 22650183 22650468 + 3 NA non-coding (NR_122075, exon 5 of 5) non-coding (NR_122075, exon 5 of 5) 15208 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 446-283 chr7 93135577 93135739 + 3 NA exon (NM_001303497, exon 6 of 6) exon (NM_001303497, exon 6 of 6) 12727 NM_001303498 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 388-127 chr16 80335626 80335796 + 3 NA intron (NR_120307, intron 2 of 5) L1MC|LINE|L1 -205023 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 612-14 chr10 52265586 52265883 + 3 NA intron (NM_001098512, intron 10 of 17) intron (NM_001098512, intron 10 of 17) 48394 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 287-251 chr3 86285462 86285589 + 3 NA Intergenic Intergenic -196418 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 783-40 chr2 104519777 104520259 + 3 NA Intergenic Intergenic -9509 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 470-171 chr3 46032373 46032574 + 3 NA Intergenic MER52D|LTR|ERV1 -4990 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 204-290 chr8 116473768 116473899 + 3 NA Intergenic Intergenic -148774 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 347-257 chr2 221024677 221024890 + 3 NA Intergenic Intergenic 547521 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 846-50 chr6 67692405 67692872 + 3 NA Intergenic Intergenic -362713 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 393-302 chr6 41262090 41262297 + 3 NA Intergenic L1M2|LINE|L1 12816 NR_002794 221438 Hs.639392 NR_002794 TREML5P TLT5|TREML2P|TREML2P1 triggering receptor expressed on myeloid cells like 5, pseudogene pseudo 1478 chr13 108644847 108645729 + 3 NA intron (NM_001198950, intron 1 of 34) intron (NM_001198950, intron 1 of 34) 15677 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 1258-7 chr5 123664640 123665258 + 3 NA Intergenic HAL1ME|LINE|L1 119532 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 443-13 chr1 107647418 107647668 + 3 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 40956 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 300-321 chr4 58653996 58654205 + 3 NA Intergenic L2a|LINE|L2 -117772 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 671-83 chr6 51053718 51054034 + 3 NA Intergenic HERVL-int|LTR|ERVL 235005 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 420-210 chr4 120702002 120702224 + 3 NA intron (NM_001300824, intron 13 of 13) intron (NM_001300824, intron 13 of 13) 220753 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 385-146 chr18 21839011 21839203 + 3 NA intron (NM_020774, intron 13 of 20) L2c|LINE|L2 -7701 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 499-178 chr4 30393112 30393414 + 3 NA Intergenic Intergenic -327106 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 471-197 chr4 115658539 115658788 + 3 NA Intergenic L1M1|LINE|L1 -545043 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 532-205 chr5 74099984 74100315 + 3 NA Intergenic Intergenic 208176 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 586-8 chr1 76128087 76128381 + 3 NA intron (NM_001349108, intron 1 of 3) MER70C|LTR|ERVL 53488 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 352-147 chr14 62329607 62329823 + 3 NA Intergenic Intergenic -189742 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 557-42 chr12 16118374 16118654 + 3 NA Intergenic L1M8|LINE|L1 159171 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 530-63 chr13 69925582 69925851 + 3 NA intron (NM_001286725, intron 3 of 9) LTR37B|LTR|ERV1 -181497 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 428-282 chr8 3642678 3642871 + 3 NA intron (NM_033225, intron 7 of 69) L1MEd|LINE|L1 -914323 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 413-322 chr9 79064985 79065222 + 3 NA Intergenic Intergenic 80563 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 688-67 chr20 11006427 11006755 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -19953 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 601-23 chr11 70920667 70921102 + 3 NA intron (NM_012309, intron 9 of 24) L1MC5|LINE|L1 -48516 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 369-189 chr2 31321525 31321735 + 3 NA Intergenic Intergenic 87478 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 617-86 chr3 72985901 72986163 + 3 NA Intergenic Intergenic -10711 NM_001318026 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 482-4 chr1 51346985 51347356 + 3 NA Intergenic Intergenic -2054 NM_001144832 22996 Hs.112949 NM_001080494 ENSG00000085831 TTC39A C1orf34|DEME-6 tetratricopeptide repeat domain 39A protein-coding 227-330 chr6 165611690 165611844 + 3 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 50333 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 726-29 chr14 60517209 60517550 + 3 NA Intergenic Intergenic 8233 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 480-182 chr22 26253175 26253340 + 3 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 83783 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 348-376 chr4 110331276 110331439 + 3 NA Intergenic LTR43|LTR|ERV1 -132742 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 521-257 chr8 88639393 88639596 + 3 NA Intergenic L1PA10|LINE|L1 -312011 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 481-297 chr8 113955545 113955720 + 3 NA Intergenic Intergenic -518693 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 399-167 chr2 163755969 163756240 + 3 NA Intergenic Intergenic -20096 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 547-48 chr12 33212940 33213233 + 3 NA Intergenic L1M1|LINE|L1 226733 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 326-349 chr3 120705725 120705878 + 3 NA intron (NM_173825, intron 4 of 7) L1MD2|LINE|L1 -23562 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 843-38 chr7 135181104 135181656 + 3 NA Intergenic HERV15-int|LTR|ERV1 -10554 NM_001305630 78996 Hs.643113 NM_024033 ENSG00000122783 CYREN C7orf49|MRI|MRI-2 cell cycle regulator of NHEJ protein-coding 469-45 chr10 131609961 131610246 + 3 NA Intergenic Intergenic 180096 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 471-172 chr3 118349232 118349487 + 3 NA Intergenic Intergenic -292409 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 329-49 chr10 39013503 39013672 + 3 NA Intergenic ALR/Alpha|Satellite|centr 316991 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1138-13 chr7 61053277 61053877 + 3 NA Intergenic Intergenic 2250479 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 223-342 chr8 86044152 86044277 + 3 NA Intergenic Intergenic 25454 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 607-54 chr16 83368941 83369268 + 3 NA intron (NM_001220489, intron 5 of 12) L1PB1|LINE|L1 -139242 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 400-296 chr5 168450700 168450909 + 3 NA intron (NM_001161661, intron 17 of 22) L1M5|LINE|L1 -35667 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 446-129 chr18 10119782 10119978 + 3 NA Intergenic L1MA7|LINE|L1 205864 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 493-8 chr1 73294840 73295098 + 3 NA Intergenic Intergenic -11201 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 365-220 chr2 207412263 207412416 + 3 NA Intergenic L2b|LINE|L2 -117623 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 550-148 chr3 90347913 90348105 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1240388 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 887-25 chr5 125208963 125209466 + 3 NA intron (NR_109882, intron 4 of 5) MLT1B|LTR|ERVL-MaLR 172383 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 503-34 chr10 66663432 66663600 + 3 NA intron (NM_001127384, intron 9 of 17) L2a|LINE|L2 -262520 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 346-225 chr2 9067398 9067597 + 3 NA Intergenic L1MC3|LINE|L1 -63813 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 425-249 chr5 164905718 164905906 + 3 NA Intergenic Intergenic 435533 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 1103-6 chr19 28756371 28756966 + 3 NA Intergenic L1PA13|LINE|L1 -28974 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 443-18 chr1 115398328 115398515 + 3 NA Intergenic L2c|LINE|L2 -60185 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 509-218 chr6 64220594 64220864 + 3 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 413893 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 843-41 chr8 48303936 48304491 + 3 NA Intergenic Intergenic -247354 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 304-52 chr10 60590340 60590577 + 3 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -17502 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 279-288 chr4 46767714 46767816 + 3 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 141480 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 414-51 chr11 98273095 98273258 + 3 NA Intergenic Intergenic -747773 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 371-34 chr1 247052239 247052437 + 3 NA intron (NM_033213, intron 1 of 3) L1PBa|LINE|L1 26473 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 388-344 chr8 78123302 78123451 + 3 NA Intergenic L2a|LINE|L2 -392964 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 444-53 chr12 43541131 43541340 + 3 NA intron (NM_025003, intron 2 of 38) intron (NM_025003, intron 2 of 38) 10968 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 520-135 chr19 49369732 49369935 + 3 NA non-coding (NR_110729, exon 3 of 3) non-coding (NR_110729, exon 3 of 3) 5956 NM_014419 27120 Hs.515855 NM_014419 ENSG00000104901 DKKL1 CT34|SGY|SGY-1|SGY1 dickkopf like acrosomal protein 1 protein-coding 502-176 chr3 45285365 45285603 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -59197 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 389-385 chr9 102301424 102301585 + 3 NA Intergenic Intergenic -218133 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 539-78 chr15 71080908 71081226 + 3 NA Intergenic Intergenic -60382 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 493-240 chr5 41399479 41399666 + 3 NA intron (NM_001005473, intron 1 of 2) L1MA1|LINE|L1 111029 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 469-94 chr15 69629867 69630152 + 3 NA intron (NR_126437, intron 3 of 5) intron (NR_126437, intron 3 of 5) 37809 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 607-26 chr11 50426075 50426355 + 3 NA Intergenic ALR/Alpha|Satellite|centr 17068 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 399-34 chr10 53013820 53014071 + 3 NA Intergenic Intergenic -242245 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 545-58 chr12 78246581 78246869 + 3 NA Intergenic L1MC4|LINE|L1 113021 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 595-82 chr2 73900819 73901055 + 3 NA intron (NM_001615, intron 1 of 8) MLT1B|LTR|ERVL-MaLR 7929 NM_001199893 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin gamma 2, smooth muscle protein-coding 578-195 chrX 55958529 55958795 + 3 NA intron (NM_001324105, intron 1 of 5) intron (NM_001324105, intron 1 of 5) 50377 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 396-156 chr2 34346125 34346407 + 3 NA Intergenic Intergenic 279040 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 215-199 chr3 88729428 88729551 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -378132 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 278-349 chr5 119952192 119952396 + 3 NA Intergenic Intergenic 322735 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 351-479 chr8 69151774 69151989 + 3 NA Intergenic Intergenic -47691 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 465-68 chr12 124077224 124077503 + 3 NA intron (NM_001347902, intron 2 of 4) L1ME4a|LINE|L1 104148 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 599-86 chr3 100516063 100516338 + 3 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 23581 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 541-41 chr12 24525316 24525528 + 3 NA intron (NM_152989, intron 1 of 17) L1MB1|LINE|L1 37069 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 472-296 chr7 31182277 31182497 + 3 NA Intergenic L1PA15|LINE|L1 129926 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 490-182 chr3 81945672 81945859 + 3 NA Intergenic L1M4|LINE|L1 -40377 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 313-268 chr2 104293029 104293241 + 3 NA Intergenic L1MEf|LINE|L1 115197 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 476-172 chr3 979180 979430 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -113719 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 477-197 chr3 35275742 35276022 + 3 NA intron (NR_110817, intron 2 of 3) L1M2|LINE|L1 118141 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 904-15 chr15 100551271 100551730 + 3 NA non-coding (NR_073405, exon 1 of 1) non-coding (NR_073405, exon 1 of 1) -6817 NM_001290343 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 504-46 chr11 103820986 103821190 + 3 NA Intergenic Intergenic -28818 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 192-44 chr11 119178967 119179053 + 3 NA intron (NM_001282144, intron 6 of 9) L2a|LINE|L2 -6465 NM_001168468 79849 Hs.374726 NM_024791 ENSG00000172367 PDZD3 IKEPP|NHERF4|PDZK2 PDZ domain containing 3 protein-coding 633-110 chr7 29060418 29060731 + 3 NA intron (NM_001371256, intron 15 of 16) intron (NM_001371256, intron 15 of 16) -64459 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 441-151 chr3 7792364 7792625 + 3 NA Intergenic L1MCb|LINE|L1 223813 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 730-24 chr19 36735767 36736078 + 3 NA Intergenic L1MA2|LINE|L1 32241 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 614-88 chr4 38284103 38284475 + 3 NA Intergenic (TATGTA)n|Simple_repeat|Simple_repeat -82625 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 646-34 chr14 37855249 37855483 + 3 NA Intergenic Intergenic 46758 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 777-15 chr12 24144304 24144671 + 3 NA intron (NM_152989, intron 4 of 17) L1ME2|LINE|L1 -67934 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 2623 chr3 99158274 99159968 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -257426 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 781-58 chr6 117013136 117013560 + 3 NA Intergenic L1MEg|LINE|L1 136106 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 278-35 chr10 60105377 60105558 + 3 NA intron (NM_001204403, intron 29 of 43) intron (NM_001204403, intron 29 of 43) 35549 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 435-226 chr7 26030930 26031120 + 3 NA Intergenic L2a|LINE|L2 -81039 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 412-41 chr10 115816157 115816361 + 3 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 378530 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 439-230 chr5 35527696 35527893 + 3 NA Intergenic L3|LINE|CR1 -90069 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 503-26 chr10 44445085 44445358 + 3 NA Intergenic L1MC3|LINE|L1 -60124 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 703-15 chr10 83386412 83386846 + 3 NA Intergenic L1MA2|LINE|L1 290460 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 465-5 chr1 33419794 33419958 + 3 NA Intergenic AluY|SINE|Alu -44283 NM_001330488 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 484-259 chr8 55458113 55458340 + 3 NA intron (NM_052898, intron 2 of 2) LTR1E|LTR|ERV1 -2905 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 349-70 chr10 78104118 78104348 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 70370 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 253-237 chr22 19394907 19395069 + 3 NA intron (NM_003325, intron 7 of 24) MIRc|SINE|MIR 36745 NM_003325 7290 Hs.474206 NM_003325 ENSG00000100084 HIRA DGCR1|TUP1|TUPLE1 histone cell cycle regulator protein-coding 526-271 chrX 69740196 69740480 + 3 NA intron (NM_001005613, intron 2 of 2) L1M4b|LINE|L1 124225 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 446-285 chr7 96613601 96613828 + 3 NA intron (NR_163950, intron 3 of 6) L1MA7|LINE|L1 50624 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 578-161 chr7 96991243 96991510 + 3 NA intron (NR_015448, intron 1 of 2) intron (NR_015448, intron 1 of 2) -14177 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 703-45 chr2 99847356 99847674 + 3 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 258068 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 380-82 chr12 3983094 3983320 + 3 NA Intergenic L1MEc|LINE|L1 -109759 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 406-221 chr5 23264148 23264305 + 3 NA Intergenic Intergenic -243383 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 378-460 chr9 115141650 115141819 + 3 NA promoter-TSS (NR_163556) promoter-TSS (NR_163556) -84 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 553-124 chr2 116257385 116257701 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 913728 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 587-180 chrX 86684676 86684952 + 3 NA intron (NM_001139515, intron 4 of 11) intron (NM_001139515, intron 4 of 11) 421846 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 959-25 chr3 188202802 188203324 + 3 NA intron (NM_001167672, intron 1 of 9) (AT)n|Simple_repeat|Simple_repeat -9870 NM_005578 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 388-134 chr17 28437494 28437696 + 3 NA Intergenic L1MEd|LINE|L1 -31383 NM_080669 113235 Hs.446689 NM_080669 ENSG00000076351 SLC46A1 G21|HCP1|PCFT solute carrier family 46 member 1 protein-coding 506-208 chr4 88061824 88062176 + 3 NA exon (NM_000297, exon 10 of 15) exon (NM_000297, exon 10 of 15) 54365 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 498-51 chr11 80491330 80491579 + 3 NA Intergenic Intergenic 271349 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 762-5 chr10 17572749 17573121 + 3 NA Intergenic Intergenic 44439 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 498-50 chr11 63100310 63100487 + 3 NA intron (NM_001136506, intron 5 of 9) L1MA3|LINE|L1 43823 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 387-304 chr6 18618374 18618562 + 3 NA intron (NR_149116, intron 4 of 7) MSTA-int|LTR|ERVL-MaLR 46684 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 574-145 chr6 23370859 23371218 + 3 NA Intergenic Intergenic -653114 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 602-16 chr10 122306791 122307199 + 3 NA intron (NM_001318189, intron 9 of 15) MIR|SINE|MIR 35699 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 715-65 chr4 92256607 92257010 + 3 NA Intergenic L1M2|LINE|L1 20494 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 532-241 chr7 34884735 34885126 + 3 NA Intergenic MIR3|SINE|MIR -50599 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 431-158 chr2 229450303 229450574 + 3 NA intron (NM_139072, intron 7 of 12) intron (NM_139072, intron 7 of 12) -179151 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 558-13 chr1 176649218 176649534 + 3 NA intron (NM_021936, intron 3 of 4) L1MA3|LINE|L1 186201 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 631-52 chr17 70643519 70643920 + 3 NA Intergenic Intergenic 474184 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 531-229 chr7 67767386 67767729 + 3 NA Intergenic Intergenic -252696 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 280-313 chr5 21644276 21644413 + 3 NA Intergenic L1M4b|LINE|L1 184864 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 531-203 chr5 118304940 118305308 + 3 NA Intergenic L1ME4b|LINE|L1 22550 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 534-151 chr22 27197926 27198282 + 3 NA Intergenic Intergenic 10588 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 931-29 chr8 144148166 144148831 + 3 NA promoter-TSS (NM_001288814) promoter-TSS (NM_001288814) -147 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 566-101 chr2 162907869 162908116 + 3 NA Intergenic Intergenic -69225 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 524-13 chr1 159406600 159406834 + 3 NA intron (NM_001363558, intron 3 of 3) intron (NM_001363558, intron 3 of 3) 9247 NM_001363558 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 525-287 chrX 64943024 64943277 + 3 NA intron (NM_001178032, intron 1 of 4) L1P3|LINE|L1 33300 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 630-30 chr14 51992507 51992865 + 3 NA intron (NM_016039, intron 2 of 7) intron (NM_016039, intron 2 of 7) 3140 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 406-63 chr12 81332855 81333010 + 3 NA intron (NM_001282536, intron 18 of 29) intron (NM_001282536, intron 18 of 29) 36437 NM_001220479 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 395-77 chr12 95929757 95929928 + 3 NA intron (NM_182496, intron 2 of 15) MLT1D|LTR|ERVL-MaLR 12772 NM_182496 120935 Hs.210377 NM_182496 ENSG00000165972 CCDC38 - coiled-coil domain containing 38 protein-coding 282-478 chr9 28737544 28737685 + 3 NA intron (NM_001354574, intron 2 of 5) MIR|SINE|MIR -18309 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 657-68 chr4 20966490 20966932 + 3 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 17298 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 345-280 chr2 123971716 123971881 + 3 NA Intergenic LOR1b|LTR|ERV1 53376 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 755-41 chr21 28672077 28672394 + 3 NA Intergenic Intergenic 132917 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 425-16 chr1 189052671 189052832 + 3 NA Intergenic Intergenic 1423259 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 435-120 chr2 56457614 56457783 + 3 NA Intergenic Intergenic -271928 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 318-555 chr8 127119506 127119641 + 3 NA Intergenic Intergenic -37352 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 598-58 chr18 30660998 30661361 + 3 NA Intergenic L1PA11|LINE|L1 362269 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 535-57 chr12 78333286 78333526 + 3 NA intron (NR_135021, intron 1 of 1) MLT1D|LTR|ERVL-MaLR 26340 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 768-49 chr7 150472463 150472844 + 3 NA intron (NM_175571, intron 3 of 4) intron (NM_175571, intron 3 of 4) 22023 NM_175571 155038 Hs.647121 NM_175571 ENSG00000171115 GIMAP8 IAN-9|IAN6|IAN9|IANT GTPase, IMAP family member 8 protein-coding 566-205 chr9 13969889 13970120 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 42033 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 358-462 chr8 15693167 15693387 + 3 NA intron (NM_001356429, intron 6 of 10) L1PA15|LINE|L1 153014 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 625-98 chr7 2710592 2711016 + 3 NA intron (NM_001321766, intron 6 of 6) intron (NM_001321766, intron 6 of 6) 22602 NM_001321766 155185 Hs.42221 NM_133463 ENSG00000174945 AMZ1 - archaelysin family metallopeptidase 1 protein-coding 1128-11 chr20 53047042 53047553 + 3 NA intron (NM_173485, intron 1 of 2) MLT1J|LTR|ERVL-MaLR 74939 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 570-130 chr3 21358641 21358884 + 3 NA Intergenic MIRc|SINE|MIR -46964 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 701-79 chr5 156273322 156273737 + 3 NA Intergenic Intergenic -53228 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 668-95 chr7 43684702 43685027 + 3 NA intron (NR_163914, intron 1 of 8) intron (NR_163914, intron 1 of 8) 44659 NR_135583 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 625-35 chr17 16556494 16556783 + 3 NA intron (NM_020653, intron 5 of 5) intron (NM_020653, intron 5 of 5) 12566 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 234-139 chr18 640821 640918 + 3 NA intron (NM_199167, intron 6 of 8) Tigger18a|DNA|TcMar-Tigger -16784 NM_001354867 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 872-31 chr21 21510939 21511465 + 3 NA intron (NM_001352592, intron 17 of 18) L1MA4|LINE|L1 226117 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 211-309 chr8 122709197 122709331 + 3 NA Intergenic L1ME1|LINE|L1 -15158 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 690-20 chr11 100048718 100049166 + 3 NA intron (NM_001243270, intron 8 of 23) L1MEc|LINE|L1 492797 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 802-44 chr3 125199695 125200038 + 3 NA intron (NM_001195483, intron 1 of 12) HAL1ME|LINE|L1 11533 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 269-435 chrX 36028814 36028973 + 3 NA intron (NM_001304548, intron 22 of 63) L1PB4|LINE|L1 109159 NM_001304548 286464 Hs.376425 NM_152632 ENSG00000165164 CFAP47 CHDC2|CXorf22|CXorf30|CXorf59 cilia and flagella associated protein 47 protein-coding 472-60 chr12 39624449 39624811 + 3 NA Intergenic L1MA3|LINE|L1 -1553 NM_001031748 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 888-37 chr6 159433127 159433702 + 3 NA Intergenic Intergenic 49883 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 479-22 chr10 43941851 43942060 + 3 NA intron (NR_033846, intron 2 of 7) L2c|LINE|L2 29553 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 961-22 chr8 120282731 120283238 + 3 NA intron (NM_021110, intron 31 of 47) LTR16A|LTR|ERVL 157882 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 251-272 chr4 97757479 97757590 + 3 NA intron (NM_174952, intron 9 of 10) LTR101_Mam|LTR|ERVL 385942 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 534-68 chr13 57526883 57527315 + 3 NA Intergenic MER67C|LTR|ERV1 -104645 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 478-260 chr7 13563014 13563309 + 3 NA Intergenic Intergenic 423353 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 697-43 chr2 50051276 50051608 + 3 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -77239 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 671-43 chr2 79394493 79394841 + 3 NA Intergenic Intergenic 106177 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 326-70 chr10 65334575 65334732 + 3 NA Intergenic Intergenic -236772 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 731-38 chr19 53145800 53146108 + 3 NA intron (NM_001172675, intron 4 of 4) L1M1|LINE|L1 -13034 NM_001352131 55786 Hs.147765 NM_018355 ENSG00000170954 ZNF415 Pact|ZfLp zinc finger protein 415 protein-coding 468-322 chr8 125825482 125825641 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 125636 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 593-72 chr2 73493431 73493783 + 3 NA intron (NM_015120, intron 10 of 22) AluSp|SINE|Alu 36504 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 597-118 chr6 73099309 73099646 + 3 NA intron (NM_001160132, intron 5 of 13) L1MA3|LINE|L1 44037 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 485-285 chr8 88877762 88878117 + 3 NA Intergenic Intergenic -550456 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 595-144 chr6 56759686 56759912 + 3 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 83866 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 731-50 chr4 6144654 6145203 + 3 NA intron (NM_144720, intron 1 of 12) L1M4|LINE|L1 49691 NM_001306133 152789 Hs.479066 NM_144720 ENSG00000152969 JAKMIP1 Gababrbp|JAMIP1|MARLIN1 janus kinase and microtubule interacting protein 1 protein-coding 517-79 chr14 62283347 62283641 + 3 NA Intergenic Intergenic -143521 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 443-303 chr8 138643357 138643620 + 3 NA intron (NM_152888, intron 47 of 64) intron (NM_152888, intron 47 of 64) -145758 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 398-104 chr14 61307107 61307274 + 3 NA Intergenic AluJr|SINE|Alu -14253 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 332-301 chr21 26909669 26909798 + 3 NA Intergenic Intergenic -44228 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 935-38 chr7 81266239 81266826 + 3 NA Intergenic HERVL18-int|LTR|ERVL 295287 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 634-90 chr20 58216874 58217305 + 3 NA 3' UTR (NM_001304369, exon 4 of 4) 3' UTR (NM_001304369, exon 4 of 4) 11564 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 558-84 chr18 78823606 78823863 + 3 NA Intergenic Intergenic -156541 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 789-29 chr21 27287641 27288114 + 3 NA Intergenic Intergenic -320789 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 461-115 chr19 35015031 35015320 + 3 NA intron (NM_001320036, intron 11 of 19) AluJr|SINE|Alu 14852 NM_001320034 57655 Hs.515351 NM_020895 ENSG00000089351 GRAMD1A KIAA1533 GRAM domain containing 1A protein-coding 580-59 chr16 62545938 62546217 + 3 NA Intergenic Intergenic -509639 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 359-498 chr8 138424457 138424677 + 3 NA intron (NM_001362965, intron 1 of 19) MIRb|SINE|MIR 72694 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 704-29 chr16 31685555 31685938 + 3 NA Intergenic L1MA4A|LINE|L1 -14867 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 470-232 chr5 171978759 171978928 + 3 NA intron (NM_012300, intron 1 of 12) intron (NM_012300, intron 1 of 12) 28030 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 321-434 chr4 134634967 134635143 + 3 NA Intergenic MIR|SINE|MIR 211187 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 514-224 chr5 53381133 53381525 + 3 NA Intergenic Charlie20a|DNA|hAT-Charlie -99300 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 283-21 chr1 159092014 159092151 + 3 NA Intergenic Intergenic -15181 NM_001348247 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 657-52 chr2 138738084 138738467 + 3 NA intron (NM_007226, intron 1 of 1) MIRb|SINE|MIR 42115 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 721-6 chr1 168919392 168919904 + 3 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 132707 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 289-118 chr12 110630499 110630611 + 3 NA TTS (NM_001319682) TTS (NM_001319682) 16426 NR_135088 79600 Hs.211511 NM_024549 ENSG00000204852 TCTN1 JBTS13|TECT1 tectonic family member 1 protein-coding 339-129 chr12 77632735 77632937 + 3 NA Intergenic Intergenic -198058 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 591-124 chr5 19132207 19132421 + 3 NA Intergenic L2a|LINE|L2 753958 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 379-141 chr19 44502324 44502542 + 3 NA Intergenic L1MC5a|LINE|L1 -1911 NM_001288761 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 652-62 chr2 29424000 29424239 + 3 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 51258 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 1354-6 chr3 194884016 194884672 + 3 NA Intergenic Intergenic -115635 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 890-42 chr8 122206076 122206719 + 3 NA Intergenic Intergenic 362247 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 226-192 chr2 226106601 226106700 + 3 NA Intergenic L1MEd|LINE|L1 -36144 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 503-13 chr1 97213395 97213621 + 3 NA intron (NM_000110, intron 19 of 22) intron (NM_000110, intron 19 of 22) 117585 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 665-20 chr12 9626021 9626340 + 3 NA intron (NR_046450, intron 1 of 4) (TA)n|Simple_repeat|Simple_repeat -7239 NR_046448 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 368-124 chr13 38020656 38020820 + 3 NA Intergenic L1MA4A|LINE|L1 122494 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 647-102 chr8 99534283 99534717 + 3 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) 2230 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 222-289 chr5 54351916 54352018 + 3 NA intron (NR_126379, intron 1 of 4) intron (NR_126379, intron 1 of 4) 31023 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 457-154 chr3 35364893 35365079 + 3 NA intron (NR_110817, intron 1 of 3) intron (NR_110817, intron 1 of 3) 29037 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 800-20 chr14 83568632 83569021 + 3 NA Intergenic Intergenic 926194 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 500-155 chr2 163878122 163878336 + 3 NA Intergenic L2c|LINE|L2 -142221 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 189-183 chr6 156385903 156386023 + 3 NA Intergenic Intergenic 7213 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 316-74 chr10 70040603 70040789 + 3 NA Intergenic Intergenic -12150 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 728-57 chr21 15125530 15125912 + 3 NA Intergenic Intergenic -60721 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 529-4 chr1 163938651 163938880 + 3 NA Intergenic FordPrefect|DNA|hAT-Tip100 -515574 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 391-275 chr5 3903861 3904060 + 3 NA Intergenic L1MEd|LINE|L1 308128 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 709-57 chr3 117819778 117820111 + 3 NA Intergenic L1MC5a|LINE|L1 -129019 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 634-36 chr12 15041976 15042374 + 3 NA Intergenic Intergenic 40342 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 351-398 chr5 137915762 137915933 + 3 NA intron (NM_001300921, intron 8 of 14) L1M4c|LINE|L1 26390 NM_014386 27039 Hs.716884 NM_014386 ENSG00000078795 PKD2L2 TRPP5 polycystin 2 like 2, transient receptor potential cation channel protein-coding 213-237 chr5 104203518 104203677 + 3 NA Intergenic Intergenic -640808 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 391-139 chr17 56401595 56401749 + 3 NA intron (NM_001370326, intron 8 of 20) L1PB1|LINE|L1 -192027 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 483-251 chr7 77373343 77373663 + 3 NA intron (NR_146937, intron 12 of 31) intron (NR_146937, intron 12 of 31) -41695 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 204-119 chr17 53948147 53948218 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie 125255 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 718-81 chr6 51438561 51439061 + 3 NA Intergenic MER33|DNA|hAT-Charlie -183059 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 424-112 chr18 72266273 72266430 + 3 NA Intergenic Intergenic 277991 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 655-47 chr17 51696843 51697192 + 3 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 261590 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 498-81 chr14 52612328 52612547 + 3 NA intron (NM_001099652, intron 3 of 6) intron (NM_001099652, intron 3 of 6) 59601 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 520-150 chr2 107513871 107514141 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -15413 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 844-31 chr2 49058728 49059262 + 3 NA promoter-TSS (NR_107011) promoter-TSS (NR_107011) -608 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 721-29 chr18 8728048 8728327 + 3 NA intron (NM_015210, intron 4 of 16) L1MEd|LINE|L1 10806 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 339-44 chr1 232196491 232196635 + 3 NA Intergenic MLT2A1|LTR|ERVL 270729 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 377-29 chr1 229037978 229038138 + 3 NA Intergenic L1M4|LINE|L1 136743 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 629-143 chr9 95945970 95946230 + 3 NA intron (NM_020207, intron 12 of 18) L1M5|LINE|L1 70092 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 301-22 chr1 204226278 204226458 + 3 NA intron (NM_014935, intron 21 of 22) intron (NM_014935, intron 21 of 22) -12380 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 631-100 chr5 43825960 43826431 + 3 NA Intergenic L1M2|LINE|L1 -222965 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 392-355 chrX 30962913 30963077 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -73741 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 protein-coding 532-257 chr7 127563185 127563389 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger 22309 NM_024523 79571 Hs.521168 NM_024523 ENSG00000179562 GCC1 GCC1P|GCC88 GRIP and coiled-coil domain containing 1 protein-coding 295-103 chr12 96837937 96838077 + 3 NA intron (NM_001306084, intron 66 of 67) intron (NM_001306084, intron 66 of 67) -69250 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 363-224 chr2 126044532 126044719 + 3 NA Intergenic Intergenic 73360 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 359-390 chr5 57947747 57947910 + 3 NA Intergenic Intergenic -48666 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 493-151 chr2 84747357 84747584 + 3 NA intron (NM_001370, intron 63 of 76) MSTB-int|LTR|ERVL-MaLR 133614 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 526-198 chr5 79523414 79523769 + 3 NA Intergenic Intergenic -9457 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 550-195 chr6 40215201 40215473 + 3 NA Intergenic Intergenic 140669 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 356-194 chr17 58998143 58998315 + 3 NA TTS (NM_015294) TTS (NM_015294) 108651 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 495-93 chr18 47718081 47718263 + 3 NA Intergenic Intergenic 212487 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 515-75 chr15 27176413 27176614 + 3 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -15194 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 500-36 chr10 111276366 111276666 + 3 NA Intergenic Intergenic 162225 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 270-275 chr4 99743183 99743365 + 3 NA Intergenic Intergenic -73553 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 463-245 chr5 178595869 178596153 + 3 NA Intergenic L1MEc|LINE|L1 -5618 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 558-47 chr12 118628709 118629047 + 3 NA Intergenic L1ME3A|LINE|L1 132801 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 577-28 chr10 58904289 58904546 + 3 NA Intergenic L1PREC2|LINE|L1 -95101 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 411 chr1 17782570 17782751 + 3 NA intron (NM_030812, intron 1 of 2) L1MC|LINE|L1 27327 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 767-28 chr2 150300454 150300942 + 3 NA Intergenic L1ME3|LINE|L1 -43691 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 284-357 chr6 122287101 122287295 + 3 NA Intergenic Intergenic -112353 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 773-12 chr14 98595770 98596319 + 3 NA Intergenic L1ME3G|LINE|L1 -115569 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 529-87 chr17 68575388 68575685 + 3 NA intron (NM_017565, intron 1 of 10) (TTATATA)n|Simple_repeat|Simple_repeat -17109 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 547-67 chr14 48122517 48122788 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -327638 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 484-21 chr1 214120624 214120894 + 3 NA Intergenic Intergenic 132226 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 645-24 chr12 104368156 104368518 + 3 NA Intergenic Intergenic 64598 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 370-229 chr2 55210560 55210801 + 3 NA intron (NM_001353782, intron 2 of 9) intron (NM_001353782, intron 2 of 9) -21223 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 987-19 chr8 123629968 123630479 + 3 NA Intergenic MER46C|DNA|TcMar-Tigger 23578 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 487-198 chr3 187200881 187201082 + 3 NA 3' UTR (NM_153708, exon 2 of 2) 3' UTR (NM_153708, exon 2 of 2) 3495 NM_153708 132112 Hs.518480 NM_153708 ENSG00000175077 RTP1 Z3CXXC1 receptor transporter protein 1 protein-coding 634-44 chr12 57347893 57348265 + 3 NA intron (NM_001351217, intron 1 of 21) intron (NM_001351217, intron 1 of 21) -5623 NM_001351214 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 504-27 chr10 76016706 76016964 + 3 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 234074 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 515-179 chr4 52225692 52226023 + 3 NA Intergenic Intergenic 174553 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 351-234 chr2 125203341 125203533 + 3 NA Intergenic L1ME3C|LINE|L1 914548 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 507-286 chrX 84369390 84369716 + 3 NA intron (NM_001177478, intron 4 of 9) L1MB2|LINE|L1 132900 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 595-165 chr8 128255423 128255672 + 3 NA Intergenic Intergenic 105431 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 850-50 chr8 106911315 106911654 + 3 NA Intergenic Intergenic -141240 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 411-203 chr4 46528929 46529112 + 3 NA Intergenic Intergenic -138892 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 493-229 chr4 184940888 184941165 + 3 NA Intergenic HAL1|LINE|L1 -2586 NR_039660 100616111 NR_039660 ENSG00000263458 MIR4455 - microRNA 4455 ncRNA 390-188 chr2 79183195 79183416 + 3 NA Intergenic Intergenic -23552 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 497-142 chr2 190018136 190018376 + 3 NA Intergenic L1MA7|LINE|L1 44473 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 606-8 chr1 170575479 170575792 + 3 NA Intergenic Intergenic -43026 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 340-229 chr19 52117762 52117972 + 3 NA intron (NM_178523, intron 3 of 3) intron (NM_178523, intron 3 of 3) 22071 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 581-96 chr3 3657787 3658105 + 3 NA Intergenic Intergenic -141485 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 442-181 chr3 13813032 13813209 + 3 NA Intergenic Intergenic 66951 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 764-35 chr2 80655645 80656090 + 3 NA Intergenic L1MB4|LINE|L1 342488 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 700-63 chr3 102992252 102992687 + 3 NA Intergenic MER68|LTR|ERVL 531647 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 376-279 chr4 58415996 58416241 + 3 NA Intergenic Intergenic 120210 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 929-17 chr19 36893084 36893630 + 3 NA TTS (NR_038362) TTS (NR_038362) 22682 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 530-180 chr4 70942828 70943192 + 3 NA intron (NM_173468, intron 1 of 5) L1ME2|LINE|L1 40641 NM_173468 92597 Hs.691454 NM_173468 ENSG00000173542 MOB1B MATS2|MOB4A|MOBKL1A MOB kinase activator 1B protein-coding 1000-7 chr15 57818788 57819299 + 3 NA Intergenic (TGTG)n|Simple_repeat|Simple_repeat 112329 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 630-50 chr2 49360393 49360830 + 3 NA Intergenic Intergenic -206084 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 650-85 chr4 44166408 44166777 + 3 NA Intergenic L1MC5a|LINE|L1 149530 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 638-113 chr5 16250918 16251243 + 3 NA Intergenic L1MEg|LINE|L1 70839 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 453-85 chr16 60669741 60669976 + 3 NA Intergenic Intergenic -310065 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 501-51 chr12 50936769 50936992 + 3 NA Intergenic Intergenic 11865 NM_014033 25840 Hs.711113 NM_014033 ENSG00000185432 METTL7A AAM-B|AAMB methyltransferase like 7A protein-coding 1015-3 chr10 39185808 39186469 + 3 NA Intergenic ALR/Alpha|Satellite|centr 489542 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 367-123 chr14 62645198 62645376 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie 400171 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 519-178 chr5 74179659 74179912 + 3 NA Intergenic Intergenic 128540 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 711-2 chr1 45188543 45188879 + 3 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 17894 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 607-135 chr7 52824621 52825001 + 3 NA Intergenic Intergenic -210822 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 550-202 chr6 93489729 93490030 + 3 NA Intergenic Intergenic -70297 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 743-15 chr11 43615088 43615616 + 3 NA Intergenic L1MEf|LINE|L1 33958 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 579-149 chr7 15755862 15756219 + 3 NA Intergenic L1M4|LINE|L1 67662 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 1032-3 chr11 70038327 70039052 + 3 NA Intergenic HERVIP10F-int|LTR|ERV1 25235 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 683-45 chr21 27375508 27375931 + 3 NA Intergenic Intergenic -346660 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 454-204 chr3 65445063 65445338 + 3 NA intron (NM_001365904, intron 7 of 24) MIRb|SINE|MIR -448616 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 531-216 chr6 61703426 61703732 + 3 NA intron (NR_146874, intron 7 of 13) intron (NR_146874, intron 7 of 13) 129449 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 250-172 chr18 1995818 1995961 + 3 NA Intergenic Intergenic 575616 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 491-181 chr4 36769395 36769683 + 3 NA Intergenic Intergenic -127639 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 491-114 chr2 39941389 39941648 + 3 NA intron (NR_038441, intron 2 of 4) MLT1A0|LTR|ERVL-MaLR 23884 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 301-421 chr7 47069138 47069310 + 3 NA Intergenic MIRb|SINE|MIR -372102 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 597-15 chr1 219306846 219307259 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 132083 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 429-266 chr7 4257192 4257387 + 3 NA intron (NM_001079653, intron 18 of 19) intron (NM_001079653, intron 18 of 19) -122452 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 363-357 chr5 42088641 42088813 + 3 NA Intergenic MIR|SINE|MIR 86618 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 498-138 chr2 179952704 179953025 + 3 NA intron (NM_020943, intron 16 of 19) intron (NM_020943, intron 16 of 19) 54433 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 536-118 chr2 56596234 56596441 + 3 NA Intergenic MIR3|SINE|MIR -410567 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 471-119 chr19 30196279 30196475 + 3 NA Intergenic L1MC4a|LINE|L1 -176007 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 520-112 chr17 3253953 3254148 + 3 NA Intergenic L1M1|LINE|L1 13374 NR_145519 653166 Hs.653087 NM_003552 ENSG00000255095 OR1D4 OR17-30 olfactory receptor family 1 subfamily D member 4 (gene/pseudogene) protein-coding 396-180 chr2 189535200 189535420 + 3 NA Intergenic Intergenic 45501 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 552-92 chr18 68759287 68759534 + 3 NA intron (NM_001093729, intron 3 of 9) HAL1|LINE|L1 -38670 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 1216-2 chr1 220940701 220941190 + 3 NA Intergenic Intergenic -60805 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 494-40 chr11 83380985 83381178 + 3 NA Intergenic Intergenic -94674 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 471-121 chr19 36865360 36865599 + 3 NA intron (NM_001242476, intron 3 of 3) AluSc8|SINE|Alu 13828 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 958-15 chr19 31985618 31986317 + 3 NA Intergenic Intergenic -39895 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 1159-2 chr13 111990154 111990712 + 3 NA intron (NR_120392, intron 1 of 3) THE1D-int|LTR|ERVL-MaLR 18123 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 559-123 chr3 103158142 103158336 + 3 NA Intergenic MER51A|LTR|ERV1 365877 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 958-3 chr1 168692393 168692949 + 3 NA Intergenic Intergenic 36535 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 246-298 chr4 73288658 73288777 + 3 NA Intergenic L1MA4|LINE|L1 -29919 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 793-11 chr12 84219786 84220217 + 3 NA Intergenic MER4C|LTR|ERV1 692798 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 400-288 chr5 92670403 92670644 + 3 NA Intergenic Intergenic 900820 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 423-201 chr4 83613330 83613539 + 3 NA Intergenic L1MA5|LINE|L1 77326 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 503-302 chr9 38111483 38111783 + 3 NA Intergenic Intergenic -42406 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 749-26 chr12 126500790 126501239 + 3 NA Intergenic Intergenic -51687 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 434-19 chr1 169729012 169729183 + 3 NA intron (NM_000450, intron 7 of 13) intron (NM_000450, intron 7 of 13) 4982 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 737-29 chr16 73969730 73970010 + 3 NA Intergenic Intergenic 245651 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 455-249 chr6 140426735 140427029 + 3 NA Intergenic L1M1|LINE|L1 221630 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 1081-16 chr8 78272344 78272974 + 3 NA Intergenic Intergenic -243681 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 515-247 chr7 49987968 49988269 + 3 NA intron (NM_001159878, intron 6 of 7) MER61-int|LTR|ERV1 105128 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 1441-3 chr4 32644190 32645093 + 3 NA Intergenic L2a|LINE|L2 293603 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 245-218 chr20 52629895 52630021 + 3 NA intron (NR_110038, intron 2 of 2) (AT)n|Simple_repeat|Simple_repeat 9120 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 490-211 chr4 183162702 183162957 + 3 NA intron (NM_024949, intron 1 of 22) intron (NM_024949, intron 1 of 22) 63572 NM_024949 80014 Hs.333179 NM_024949 ENSG00000151718 WWC2 BOMB WW and C2 domain containing 2 protein-coding 259-127 chr14 84391457 84391606 + 3 NA Intergenic Intergenic -880401 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 1310-6 chr7 15341730 15342444 + 3 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 219928 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 460-67 chr12 68110982 68111191 + 3 NA Intergenic Intergenic 48654 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 532-251 chr7 71352683 71352932 + 3 NA intron (NM_022479, intron 2 of 10) L2|LINE|L2 -45037 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 324-139 chr13 67420599 67420715 + 3 NA Intergenic (TAATA)n|Simple_repeat|Simple_repeat 48270 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 589-26 chr12 65983851 65984113 + 3 NA Intergenic Intergenic 39744 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 357-210 chr2 113877548 113877702 + 3 NA intron (NR_110174, intron 1 of 4) FLAM_C|SINE|Alu -12309 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 264-192 chr2 15847060 15847209 + 3 NA Intergenic Intergenic -73265 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 886-29 chr5 50182549 50183168 + 3 NA Intergenic ALR/Alpha|Satellite|centr 258430 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 482-55 chr11 87968733 87968999 + 3 NA Intergenic L1PB4|LINE|L1 206577 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 335-194 chr17 20763209 20763389 + 3 NA Intergenic L1MEf|LINE|L1 50853 NR_073509 100287072 Hs.676308 NR_073509 LOC100287072 - ribosomal protein S6 kinase B1 pseudogene pseudo 431-20 chr1 182748366 182748641 + 3 NA Intergenic L1MA8|LINE|L1 35641 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 360-437 chr7 77481489 77481652 + 3 NA Intergenic Intergenic -55725 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 274-330 chr6 40103730 40103887 + 3 NA Intergenic Intergenic -169346 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 636-12 chr10 8358501 8358802 + 3 NA Intergenic Intergenic -90346 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 629-60 chr2 56478194 56478520 + 3 NA Intergenic L1M4b|LINE|L1 -292587 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 783-16 chr11 34467702 34468181 + 3 NA intron (NM_001752, intron 10 of 12) intron (NM_001752, intron 10 of 12) 29007 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 521-212 chr6 39581617 39581868 + 3 NA intron (NM_001289020, intron 9 of 21) intron (NM_001289020, intron 9 of 21) 143666 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 517-142 chr2 138538093 138538343 + 3 NA intron (NM_001001664, intron 1 of 10) L1MB5|LINE|L1 36448 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 420-71 chr13 52823284 52823450 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 13317 NR_031582 100313778 NR_031582 ENSG00000211579 MIR759 hsa-mir-759 microRNA 759 ncRNA 821-25 chr2 114107390 114107777 + 3 NA Intergenic L1MB7|LINE|L1 -127599 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 280-130 chr14 87811364 87811538 + 3 NA Intergenic Tigger3b|DNA|TcMar-Tigger -156157 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 367-149 chr16 51270521 51270695 + 3 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -119336 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 180-160 chr7 84415461 84415521 + 3 NA Intergenic L1MC4|LINE|L1 -116985 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 710-64 chr3 78156935 78157306 + 3 NA Intergenic L1PBb|LINE|L1 -108157 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 508-176 chr4 115553006 115553203 + 3 NA Intergenic Intergenic -439484 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 479-253 chr8 114240449 114240613 + 3 NA Intergenic FordPrefect|DNA|hAT-Tip100 -803592 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 299-212 chr2 95407893 95408012 + 3 NA intron (NM_016044, intron 3 of 7) L1MC4|LINE|L1 5244 NM_016044 51011 Hs.531247 NM_016044 ENSG00000115042 FAHD2A CGI-105 fumarylacetoacetate hydrolase domain containing 2A protein-coding 568-95 chr2 8235104 8235347 + 3 NA intron (NR_152741, intron 9 of 9) intron (NR_152741, intron 9 of 9) 93194 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 544-165 chr4 86732506 86732752 + 3 NA exon (NM_006264, exon 12 of 47) exon (NM_006264, exon 12 of 47) 116755 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 415-200 chr4 70306381 70306639 + 3 NA Intergenic L2|LINE|L2 -28471 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 732-60 chr3 54795224 54795558 + 3 NA intron (NM_018398, intron 13 of 37) L1MEf|LINE|L1 105864 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 691-93 chr8 137969670 137969928 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 113746 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 942-3 chr1 175777903 175778436 + 3 NA Intergenic L1PA13|LINE|L1 -34574 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 217-263 chr4 86665580 86665691 + 3 NA intron (NM_080685, intron 2 of 47) intron (NM_080685, intron 2 of 47) 71320 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 283-310 chr4 22534789 22534925 + 3 NA Intergenic MER92C|LTR|ERV1 -18791 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 502-54 chr11 79875282 79875536 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -434379 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 954-43 chr6 40514373 40514903 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 72726 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 220-289 chr5 84116913 84116999 + 3 NA intron (NM_001278642, intron 4 of 9) intron (NM_001278642, intron 4 of 9) 267911 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 399-6 chr1 103882533 103882775 + 3 NA Intergenic L1PREC2|LINE|L1 132813 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 374-52 chr11 73484514 73484703 + 3 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 107940 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 596-12 chr1 211172145 211172426 + 3 NA Intergenic L1MEc|LINE|L1 -38137 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 932-35 chr8 117346452 117347071 + 3 NA Intergenic L1MA9|LINE|L1 -173952 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 527-223 chr6 74352498 74352852 + 3 NA intron (NR_110856, intron 2 of 3) Tigger4|DNA|TcMar-Tigger 283224 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 559-135 chr4 58380178 58380440 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 156019 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 766-16 chr12 87063788 87064150 + 3 NA Intergenic L1PA15|LINE|L1 -224969 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 472-324 chr8 117586188 117586357 + 3 NA Intergenic Intergenic 65559 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 372-269 chr2 198627866 198628053 + 3 NA Intergenic Intergenic -252862 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 416-284 chr5 150936466 150936822 + 3 NA intron (NR_026867, intron 4 of 4) L1MB8|LINE|L1 9940 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 350-565 chrX 46070030 46070177 + 3 NA Intergenic L1MC5|LINE|L1 -218613 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 260-383 chr6 115943026 115943195 + 3 NA exon (NM_002031, exon 7 of 8) exon (NM_002031, exon 7 of 8) -95621 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 437-224 chr5 63188516 63188745 + 3 NA Intergenic Intergenic 609811 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 568-165 chr5 149695155 149695607 + 3 NA Intergenic FLAM_A|SINE|Alu -34929 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 466-88 chr15 93665447 93665744 + 3 NA Intergenic Intergenic -190965 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 282-182 chr19 9292700 9292891 + 3 NA 3' UTR (NM_198535, exon 6 of 6) 3' UTR (NM_198535, exon 6 of 6) 17043 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 745-22 chr18 64733712 64734065 + 3 NA Intergenic Intergenic -473833 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 630-73 chr20 40378402 40378835 + 3 NA Intergenic L1ME3Cz|LINE|L1 310618 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 583-93 chr2 162176794 162177028 + 3 NA intron (NM_004460, intron 21 of 25) intron (NM_004460, intron 21 of 25) -24664 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 533-102 chr2 86411880 86412108 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR -29377 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 421-66 chr13 69661742 69661904 + 3 NA Intergenic Intergenic 439477 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 466-142 chr2 132398855 132399052 + 3 NA Intergenic MER21C|LTR|ERVL -17852 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 502-6 chr1 65747725 65747939 + 3 NA Intergenic L1MA4|LINE|L1 -44678 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 547-264 chr9 78152903 78153128 + 3 NA Intergenic L1ME1|LINE|L1 -83060 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 708-53 chr4 63394669 63395067 + 3 NA Intergenic Intergenic 1014582 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 491-157 chr22 28461987 28462314 + 3 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 2281 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 933-44 chr9 36785028 36785682 + 3 NA Intergenic MER112|DNA|hAT-Charlie 38244 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 384-361 chr8 14008836 14009013 + 3 NA Intergenic Intergenic 379234 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 803-31 chr21 18389987 18390397 + 3 NA intron (NM_002772, intron 3 of 24) intron (NM_002772, intron 3 of 24) 13593 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 613-37 chr16 6537429 6537759 + 3 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -236215 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 258-98 chr12 118614579 118614746 + 3 NA Intergenic Tigger13a|DNA|TcMar-Tigger 147017 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 647-53 chr2 143712610 143712999 + 3 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -224263 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 548-224 chr8 21874357 21874606 + 3 NA Intergenic Intergenic 39209 NM_003974 9046 Hs.71215 NM_003974 ENSG00000147443 DOK2 p56DOK|p56dok-2 docking protein 2 protein-coding 1047-17 chr4 100699580 100700075 + 3 NA Intergenic Intergenic -24714 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 437-247 chr6 169472868 169473098 + 3 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) -218869 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 456-87 chr14 49665047 49665343 + 3 NA intron (NM_001348385, intron 7 of 18) intron (NM_001348385, intron 7 of 18) 23019 NM_002692 5427 Hs.162777 NM_002692 ENSG00000100479 POLE2 DPE2 DNA polymerase epsilon 2, accessory subunit protein-coding 336-275 chr2 95154936 95155136 + 3 NA intron (NM_001318005, intron 2 of 4) MLT1I-int|LTR|ERVL-MaLR 4549 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 463-75 chr13 21711112 21711274 + 3 NA Intergenic L1MEc|LINE|L1 40120 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 400-194 chr20 56235335 56235537 + 3 NA Intergenic Intergenic -13296 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 521-165 chr3 111481206 111481497 + 3 NA Intergenic Intergenic -60846 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 323-100 chr11 117003277 117003444 + 3 NA intron (NM_001366687, intron 1 of 4) MIRc|SINE|MIR 95068 NM_001366686 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 394-19 chr1 147848983 147849211 + 3 NA Intergenic L1ME4a|LINE|L1 -53698 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 507-277 chr9 102265957 102266262 + 3 NA Intergenic Intergenic -253528 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 448-67 chr12 125585521 125585759 + 3 NA intron (NM_052907, intron 5 of 8) intron (NM_052907, intron 5 of 8) -36812 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 394-129 chr16 76577603 76577803 + 3 NA Intergenic Intergenic -57295 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 1029-17 chr8 108313694 108314402 + 3 NA Intergenic Intergenic -65331 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 382-252 chr22 42853770 42854023 + 3 NA intron (NM_001142293, intron 1 of 14) intron (NM_001142293, intron 1 of 14) 3377 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 429-174 chr20 25011284 25011572 + 3 NA intron (NM_032501, intron 12 of 13) intron (NM_032501, intron 12 of 13) -18677 NM_020531 57136 Hs.472330 NM_020531 ENSG00000101474 APMAP BSCv|C20orf3 adipocyte plasma membrane associated protein protein-coding 548-213 chr7 64731023 64731299 + 3 NA Intergenic L1MA7|LINE|L1 52097 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 350-439 chr6 55572140 55572309 + 3 NA intron (NM_001287746, intron 1 of 9) L1M5|LINE|L1 6990 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 527-23 chr10 39293028 39293287 + 3 NA Intergenic ALR/Alpha|Satellite|centr 596561 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 341-505 chr7 122753145 122753329 + 3 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) -50315 NM_198085 378925 Hs.675191 NM_198085 ENSG00000235631 RNF148 - ring finger protein 148 protein-coding 540-38 chr11 79734746 79734971 + 3 NA Intergenic Intergenic -293828 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 393-125 chr17 27947367 27947548 + 3 NA intron (NR_146896, intron 2 of 4) L1MB5|LINE|L1 44250 NR_146896 105371708 Hs.385535 NR_146896 LINC01992 - long intergenic non-protein coding RNA 1992 ncRNA 567-15 chr1 213610457 213610807 + 3 NA Intergenic Intergenic -314117 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 373-260 chr3 88176777 88177011 + 3 NA Intergenic Intergenic 26935 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 446-118 chr17 34894358 34894545 + 3 NA Intergenic Intergenic 67009 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 1410-2 chr22 34823527 34824414 + 3 NA intron (NR_138042, intron 3 of 4) L2a|LINE|L2 173946 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 283-383 chr5 152850965 152851120 + 3 NA intron (NR_109877, intron 2 of 4) L1MC1|LINE|L1 121307 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 531-31 chr11 3372252 3372477 + 3 NA intron (NM_007152, intron 1 of 3) L1MC4|LINE|L1 6782 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 500-117 chr19 35216784 35216971 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR 11848 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 424-249 chr6 162683314 162683497 + 3 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -43727 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 573-71 chr16 9419497 9419815 + 3 NA Intergenic Intergenic 25329 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 544-106 chr2 10871202 10871499 + 3 NA Intergenic L1M4b|LINE|L1 -6917 NR_110575 101929733 Hs.736697 NR_110575 ENSG00000271952 LINC01954 - long intergenic non-protein coding RNA 1954 ncRNA 439-305 chr9 38149338 38149560 + 3 NA Intergenic L1M2|LINE|L1 -80222 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 696-80 chr4 60144304 60144826 + 3 NA Intergenic Intergenic -778054 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 537-229 chr7 13434048 13434405 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR 552288 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 620-82 chr3 1984127 1984521 + 3 NA Intergenic Intergenic -114479 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 703-44 chr2 60724796 60725137 + 3 NA Intergenic L1MD|LINE|L1 -31302 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 492-199 chr4 183336038 183336268 + 3 NA Intergenic Intergenic -13727 NM_001185149 100132463 Hs.727475 NM_001185149 ENSG00000185758 CLDN24 CLDN21 claudin 24 protein-coding 500-310 chr8 133712364 133712655 + 3 NA Intergenic AluSx1|SINE|Alu -28443 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 305-76 chr10 94685775 94686003 + 3 NA intron (NM_000772, intron 1 of 8) L1MA6|LINE|L1 2160 NM_001128925 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 443-305 chr9 22433546 22433765 + 3 NA Intergenic L1M4|LINE|L1 -13169 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 551-201 chr7 121763862 121764112 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -109174 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 413-222 chr4 86708184 86708409 + 3 NA intron (NM_080685, intron 7 of 47) intron (NM_080685, intron 7 of 47) 113981 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 514-154 chr2 129382403 129382634 + 3 NA Intergenic L1MD2|LINE|L1 -108627 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 537-156 chr3 65971450 65971651 + 3 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -16992 NR_145422 151877 Hs.476636 NR_145422 ENSG00000272610 MAGI1-IT1 - MAGI1 intronic transcript 1 ncRNA 406-82 chr14 66155274 66155456 + 3 NA Intergenic Intergenic -331006 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 600-4 chr1 111833893 111834313 + 3 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 22802 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 698-88 chr8 139084065 139084550 + 3 NA Intergenic Tigger4a|DNA|TcMar-Tigger -170266 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 499-264 chr8 87315439 87315605 + 3 NA intron (NM_173538, intron 8 of 10) MSTB1|LTR|ERVL-MaLR 449107 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 431-151 chr2 182321859 182322018 + 3 NA intron (NM_005019, intron 1 of 14) MIR3|SINE|MIR -79875 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 481-291 chr8 65451681 65451842 + 3 NA Intergenic Intergenic 110905 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 233-131 chr17 62374480 62374560 + 3 NA intron (NM_001144933, intron 2 of 11) intron (NM_001144933, intron 2 of 11) 4302 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 652-63 chr2 52682403 52682846 + 3 NA Intergenic L1MA4A|LINE|L1 19991 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 318-250 chr2 30796550 30796703 + 3 NA intron (NM_144575, intron 1 of 22) L3|LINE|CR1 10820 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 535-195 chr5 25748354 25748594 + 3 NA Intergenic L1MC3|LINE|L1 557521 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 466-38 chr10 109517231 109517416 + 3 NA Intergenic Intergenic 405923 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 561-37 chr11 63225308 63225630 + 3 NA intron (NM_199352, intron 2 of 8) L1MA3|LINE|L1 4183 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 493-162 chr2 133540752 133541026 + 3 NA intron (NM_207481, intron 2 of 17) AluSx|SINE|Alu 27574 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 674-32 chr15 59184072 59184489 + 3 NA intron (NM_004998, intron 18 of 27) AluSz|SINE|Alu -13018 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 935-2 chr1 107034727 107035260 + 3 NA Intergenic L1ME4b|LINE|L1 -21681 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 470-285 chr9 28685548 28685777 + 3 NA intron (NM_001354574, intron 2 of 5) Helitron3Na_Mam|RC|Helitron 33643 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 496-189 chr3 192628570 192628746 + 3 NA intron (NM_004113, intron 2 of 5) (TA)n|Simple_repeat|Simple_repeat 98883 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 449-298 chrX 10526844 10527155 + 3 NA intron (NM_033289, intron 2 of 9) intron (NM_033289, intron 2 of 9) 40604 NM_001193281 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 412-223 chr3 180005936 180006303 + 3 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) 30818 NM_001349401 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 502-115 chr17 70240805 70241074 + 3 NA Intergenic Intergenic 71404 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 353-403 chr5 33765872 33766002 + 3 NA intron (NM_001324511, intron 2 of 2) intron (NM_001324511, intron 2 of 2) 126053 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 777-51 chr5 42098511 42098886 + 3 NA Intergenic L1M1|LINE|L1 76647 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 500-326 chrX 45947365 45947535 + 3 NA Intergenic Intergenic -95960 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 297-378 chr5 121746096 121746252 + 3 NA Intergenic Intergenic -105708 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 688-22 chr11 54797217 54797708 + 3 NA Intergenic ALR/Alpha|Satellite|centr 90630 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 352-537 chr8 101744399 101744556 + 3 NA intron (NM_001040625, intron 4 of 6) LTR104_Mam|LTR|Gypsy 46492 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 482-36 chr10 75442471 75442719 + 3 NA intron (NM_001305581, intron 2 of 6) L1M3|LINE|L1 10971 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 660-18 chr12 17042908 17043187 + 3 NA Intergenic L1MEg|LINE|L1 54300 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 240-71 chr11 9306726 9306878 + 3 NA intron (NR_028491, intron 1 of 7) intron (NR_028491, intron 1 of 7) 7791 NR_028491 440026 Hs.594563 NM_015012 ENSG00000166471 TMEM41B - transmembrane protein 41B protein-coding 396-232 chr3 125085264 125085460 + 3 NA intron (NM_001195483, intron 12 of 12) intron (NM_001195483, intron 12 of 12) -29365 NM_020733 57493 Hs.477420 NM_020733 ENSG00000173706 HEG1 HEG|MST112|MSTP112 heart development protein with EGF like domains 1 protein-coding 541-168 chr4 78986268 78986484 + 3 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 14628 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 392-306 chr7 49993929 49994077 + 3 NA intron (NM_001159878, intron 6 of 7) ERVL-B4-int|LTR|ERVL 99243 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 1028-11 chr3 88534566 88535088 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie 196371 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 548-195 chr6 40462489 40462685 + 3 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 84250 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 208-111 chr2 31391924 31392021 + 3 NA intron (NM_000379, intron 6 of 35) L1MC1|LINE|L1 22770 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 652-58 chr18 53218351 53218768 + 3 NA intron (NM_005215, intron 12 of 28) intron (NM_005215, intron 12 of 28) -18542 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 842-18 chr19 37704390 37704790 + 3 NA intron (NM_001172677, intron 4 of 4) L1MEf|LINE|L1 -12275 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 472-92 chr14 86557566 86557805 + 3 NA Intergenic Intergenic -348093 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 416-215 chr3 16165251 16165474 + 3 NA Intergenic Intergenic -9318 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 470-254 chr7 62935064 62935282 + 3 NA Intergenic ALR/Alpha|Satellite|centr 368883 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 722-61 chr4 99400170 99400703 + 3 NA Intergenic Intergenic 34698 NM_001166504 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 444-93 chr17 11060936 11061167 + 3 NA Intergenic MSTC-int|LTR|ERVL-MaLR -180162 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 446-24 chr1 201108417 201108609 + 3 NA intron (NM_000069, intron 2 of 43) intron (NM_000069, intron 2 of 43) 3913 NM_000069 779 Hs.1294 NM_000069 ENSG00000081248 CACNA1S CACNL1A3|CCHL1A3|Cav1.1|HOKPP|HOKPP1|MHS5|TTPP1|hypoPP calcium voltage-gated channel subunit alpha1 S protein-coding 359-448 chr7 46706786 46706931 + 3 NA Intergenic L2a|LINE|L2 -9736 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 385-412 chrX 20016036 20016244 + 3 NA TTS (NR_037414) TTS (NR_037414) 1047 NR_037414 100500809 NR_037414 ENSG00000264566 MIR23C hsa-mir-23c|mir-23c microRNA 23c ncRNA 459-305 chr8 120316589 120316867 + 3 NA intron (NM_021110, intron 40 of 47) L2c|LINE|L2 128422 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 1156-9 chr5 25300102 25300685 + 3 NA intron (NR_136209, intron 3 of 3) L1MC1|LINE|L1 109440 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 1026-18 chr3 193365584 193366138 + 3 NA intron (NM_198505, intron 1 of 29) L1ME4c|LINE|L1 12892 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 699-7 chr1 153156164 153156592 + 3 NA Intergenic Intergenic -5488 NM_001014291 6706 Hs.490253 NM_001014291 ENSG00000159516 SPRR2G - small proline rich protein 2G protein-coding 403-133 chr18 3754515 3754711 + 3 NA intron (NM_001242762, intron 2 of 9) AluSx3|SINE|Alu 90745 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 562-8 chr1 166077665 166077892 + 3 NA intron (NR_163271, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 77020 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 615-103 chr5 13564071 13564416 + 3 NA Intergenic L1MC3|LINE|L1 380237 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 674-73 chr5 5743123 5743589 + 3 NA Intergenic L1MC3|LINE|L1 320679 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 983 chr1 242133791 242134301 + 3 NA intron (NM_001320272, intron 6 of 10) intron (NM_001320272, intron 6 of 10) -134948 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 607-110 chr4 120937646 120937963 + 3 NA Intergenic L1MB2|LINE|L1 -14938 NM_018699 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 407-268 chr5 169897392 169897553 + 3 NA intron (NM_001346304, intron 1 of 3) AluSc5|SINE|Alu 83023 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 495-103 chr2 29031834 29032034 + 3 NA intron (NM_001321538, intron 13 of 18) L2c|LINE|L2 42589 NM_001029883 388939 Hs.354243 NM_001029883 ENSG00000179270 PCARE C2orf71|RP54 photoreceptor cilium actin regulator protein-coding 799-11 chr11 131005612 131005960 + 3 NA Intergenic Intergenic -89299 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 478-306 chr9 73719827 73720083 + 3 NA Intergenic L1MC4|LINE|L1 568090 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 471-224 chr6 45600095 45600373 + 3 NA Intergenic L1M4a2|LINE|L1 177959 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 1080 chr1 112205504 112206085 + 3 NA Intergenic L1MEd|LINE|L1 -190420 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 543-270 chrX 76659088 76659396 + 3 NA intron (NR_110404, intron 1 of 2) L1M1|LINE|L1 231532 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 375-126 chr14 62435879 62436051 + 3 NA Intergenic L1MEc|LINE|L1 -295992 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 1017-6 chr14 66860062 66860562 + 3 NA intron (NM_001024218, intron 4 of 21) L1MA2|LINE|L1 -329128 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 460-32 chr10 36214914 36215107 + 3 NA Intergenic Intergenic 436708 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 591-49 chr16 69686708 69687031 + 3 NA intron (NM_173215, intron 11 of 13) intron (NM_173215, intron 11 of 13) 21806 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 742-30 chr16 6687811 6688168 + 3 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -85820 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 383-354 chr7 41798918 41799093 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -95915 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 364-124 chr14 38364710 38364909 + 3 NA Intergenic Intergenic -108716 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 1068 chr1 75102289 75102951 + 3 NA Intergenic L1ME4a|LINE|L1 -25814 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 775-81 chr8 83811518 83811961 + 3 NA Intergenic MER4D1|LTR|ERV1 -371048 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 483-199 chr5 15637206 15637481 + 3 NA intron (NM_001278317, intron 2 of 3) L3|LINE|CR1 -22341 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 812-42 chr5 155178159 155178623 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 164636 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 688-9 chr1 222032582 222033054 + 3 NA Intergenic Intergenic -54298 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 593-143 chr8 32743266 32743499 + 3 NA TTS (NM_013958) TTS (NM_013958) 21547 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 613-31 chr14 60420208 60420622 + 3 NA Intergenic Intergenic 65648 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 415-149 chr2 237250635 237250842 + 3 NA Intergenic L1MC3|LINE|L1 163426 NM_057166 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 458-247 chr8 5182515 5182707 + 3 NA Intergenic L1MD1|LINE|L1 -187697 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 552-157 chr4 94367234 94367634 + 3 NA Intergenic L1M1|LINE|L1 -24598 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 369-34 chr10 42312709 42312962 + 3 NA Intergenic Intergenic 55210 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 628-34 chr12 34648374 34648712 + 3 NA Intergenic ALR/Alpha|Satellite|centr 626047 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 795-18 chr12 118701118 118701638 + 3 NA Intergenic L3|LINE|CR1 60301 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 384-135 chr16 48007634 48007811 + 3 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 42033 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 488-209 chr5 50196616 50196850 + 3 NA Intergenic ALR/Alpha|Satellite|centr 244555 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 276-150 chr14 65331559 65331726 + 3 NA Intergenic MER4A1_|LTR|ERV1 3541 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 424-43 chr11 66570868 66571199 + 3 NA Intergenic MER4D1|LTR|ERV1 -2427 NM_003793 8722 Hs.11590 NM_003793 ENSG00000174080 CTSF CATSF|CLN13 cathepsin F protein-coding 546-144 chr3 42919939 42920232 + 3 NA TTS (NM_001134656) TTS (NM_001134656) 13943 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 393-208 chr22 34939392 34939592 + 3 NA intron (NR_138042, intron 1 of 4) MLT1J2|LTR|ERVL-MaLR 58424 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 560-50 chr14 53207953 53208221 + 3 NA Intergenic L1PBa|LINE|L1 54733 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 771-41 chr2 76656610 76657092 + 3 NA Intergenic L1MC1|LINE|L1 -329114 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 493-253 chr6 6209699 6209927 + 3 NA intron (NM_000129, intron 8 of 14) L1MB7|LINE|L1 -40378 NR_107007 102466866 NR_107007 ENSG00000263572 MIR7853 hsa-mir-7853 microRNA 7853 ncRNA 906 chr1 57919811 57920257 + 3 NA intron (NM_021080, intron 1 of 16) MIR|SINE|MIR 59453 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 169-48 chr17 66509797 66509868 + 3 NA intron (NM_002737, intron 3 of 16) L2b|LINE|L2 -92978 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 560-42 chr13 82314303 82314701 + 3 NA Intergenic Intergenic -1087519 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 557-16 chr10 20642795 20643077 + 3 NA Intergenic LTR16|LTR|ERVL 90966 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 523-198 chr4 57976188 57976503 + 3 NA Intergenic Intergenic 550473 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 729-69 chr6 157808902 157809291 + 3 NA Intergenic L1ME1|LINE|L1 -14150 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 515-269 chr8 131470012 131470306 + 3 NA Intergenic Intergenic -429250 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 735-80 chr8 91679261 91679533 + 3 NA Intergenic Intergenic 338283 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 622-77 chr20 42555212 42555478 + 3 NA intron (NM_133170, intron 7 of 31) L2a|LINE|L2 -130138 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 526-193 chr4 185323536 185323748 + 3 NA exon (NM_001317781, exon 9 of 19) exon (NM_001317781, exon 9 of 19) 55356 NM_018409 55805 Hs.558513 NM_018409 ENSG00000109771 LRP2BP - LRP2 binding protein protein-coding 568-111 chr2 118553892 118554210 + 3 NA Intergenic Intergenic 48915 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 578-197 chrX 87597165 87597459 + 3 NA intron (NM_057162, intron 1 of 10) intron (NM_057162, intron 1 of 10) 79510 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 389-183 chr2 125901690 125901843 + 3 NA Intergenic L1MEc|LINE|L1 216219 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 514-85 chr14 61988449 61988643 + 3 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 60851 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 460-112 chr18 5184370 5184599 + 3 NA intron (NM_001330553, intron 1 of 1) L1PA15|LINE|L1 12773 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 276-490 chrX 68487996 68488133 + 3 NA Intergenic Intergenic -10718 NM_001195214 286451 Hs.82719 NM_173834 ENSG00000181704 YIPF6 FinGER6 Yip1 domain family member 6 protein-coding 288-217 chr2 187567894 187568053 + 3 NA Intergenic Intergenic -13468 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 639-71 chr20 13542559 13542828 + 3 NA intron (NM_001323602, intron 4 of 9) L1MEd|LINE|L1 96239 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 437-207 chr5 12380155 12380333 + 3 NA Intergenic L1PA14|LINE|L1 -194613 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 820-8 chr11 70425636 70425994 + 3 NA intron (NM_005231, intron 13 of 17) intron (NM_005231, intron 13 of 17) 27286 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 485-154 chr2 186332406 186332590 + 3 NA Intergenic Intergenic -153762 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 389-162 chr2 33497078 33497344 + 3 NA intron (NM_001349975, intron 3 of 19) intron (NM_001349975, intron 3 of 19) -16664 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 688-116 chr9 96849980 96850442 + 3 NA intron (NM_001346993, intron 1 of 3) L1PB3|LINE|L1 4303 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 488-261 chr7 144515889 144516136 + 3 NA intron (NM_001042482, intron 7 of 7) intron (NM_001042482, intron 7 of 7) -105785 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 309-332 chr22 45150283 45150420 + 3 NA intron (NR_038956, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 2233 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 551-194 chr7 62888080 62888267 + 3 NA Intergenic ALR/Alpha|Satellite|centr 415883 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 1013-10 chr20 1702885 1703363 + 3 NA Intergenic Intergenic -45345 NM_080816 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 661-15 chr11 105614758 105615026 + 3 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 4186 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 294-387 chr5 119468043 119468178 + 3 NA intron (NM_000414, intron 2 of 23) L1MA5|LINE|L1 15613 NM_001292028 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 612-94 chr3 121177823 121178163 + 3 NA intron (NM_001348343, intron 9 of 27) L1MB3|LINE|L1 128353 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 630-158 chrX 38373486 38373775 + 3 NA intron (NM_000531, intron 3 of 9) intron (NM_000531, intron 3 of 9) 21026 NM_000531 5009 Hs.117050 NM_000531 ENSG00000036473 OTC OCTD ornithine carbamoyltransferase protein-coding 666-87 chr5 3939929 3940215 + 3 NA Intergenic L1MC1|LINE|L1 344240 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 434-215 chr4 132879335 132879594 + 3 NA Intergenic L1MA2|LINE|L1 269652 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 480-29 chr10 44558497 44558663 + 3 NA Intergenic Intergenic -173483 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 469-206 chr4 160129820 160129978 + 3 NA Intergenic MER77|LTR|ERVL -352115 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 579-144 chr6 161662861 161663190 + 3 NA intron (NM_004562, intron 7 of 11) THE1B|LTR|ERVL-MaLR 192048 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 520-197 chr3 166859748 166860097 + 3 NA Intergenic L1MEd|LINE|L1 -38761 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 449-285 chr8 126055364 126055542 + 3 NA Intergenic Intergenic -104256 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 658-91 chr4 77212940 77213469 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 55997 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 217-374 chr8 118403653 118403747 + 3 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -217301 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 271-223 chr2 220056790 220056938 + 3 NA Intergenic Intergenic -150299 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 558-136 chr3 87146031 87146368 + 3 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 56919 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 538-190 chr5 25781450 25781727 + 3 NA Intergenic Intergenic 590635 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 379-41 chr10 65307542 65307715 + 3 NA Intergenic Intergenic -263797 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 417-52 chr11 102892636 102892876 + 3 NA Intergenic Intergenic -17774 NM_002426 4321 Hs.1695 NM_002426 ENSG00000262406 MMP12 HME|ME|MME|MMP-12 matrix metallopeptidase 12 protein-coding 477-64 chr11 109092461 109092639 + 3 NA Intergenic Intergenic -329640 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 380-419 chr9 71884700 71884878 + 3 NA intron (NM_001025780, intron 1 of 3) L2b|LINE|L2 26456 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 484-42 chr11 103295081 103295343 + 3 NA intron (NM_001377, intron 75 of 88) L1M1|LINE|L1 185786 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 745-70 chr7 72108068 72108366 + 3 NA intron (NM_001363460, intron 2 of 5) MLT1D|LTR|ERVL-MaLR 229174 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 530-286 chrX 125889079 125889288 + 3 NA Intergenic L1PA16|LINE|L1 -220579 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 408-323 chr7 113751737 113751971 + 3 NA Intergenic Intergenic 167155 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 442-244 chr6 36486490 36486672 + 3 NA intron (NR_104480, intron 5 of 5) intron (NR_104480, intron 5 of 5) 43581 NM_001286579 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 323-235 chr2 30911715 30911859 + 3 NA intron (NM_024572, intron 14 of 14) intron (NM_024572, intron 14 of 14) -104341 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 568-16 chr10 75279678 75280051 + 3 NA non-coding (NR_120651, exon 4 of 4) non-coding (NR_120651, exon 4 of 4) -16519 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 1160-11 chr7 56641129 56641943 + 3 NA Intergenic L1MB2|LINE|L1 -103406 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 778-5 chr1 174603487 174603792 + 3 NA intron (NM_001366446, intron 13 of 25) L1M1|LINE|L1 -96900 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 475-24 chr10 50808704 50809027 + 3 NA intron (NM_001370131, intron 11 of 11) intron (NM_001370131, intron 11 of 11) 68929 NM_001079516 653308 Hs.659820 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3|bA98I6.3 N-acylsphingosine amidohydrolase 2B protein-coding 356-137 chr14 35612861 35613028 + 3 NA intron (NM_014990, intron 34 of 40) L1MB8|LINE|L1 78780 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 470-162 chr21 24702679 24702966 + 3 NA Intergenic Intergenic -137728 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 299-56 chr10 77149229 77149397 + 3 NA intron (NR_120654, intron 2 of 2) intron (NR_120654, intron 2 of 2) 8482 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 302-328 chr4 81545949 81546078 + 3 NA Intergenic Intergenic -74106 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 572-72 chr17 74553363 74553632 + 3 NA Intergenic MER4A1_|LTR|ERV1 -7382 NM_006678 10871 Hs.2605 NM_006678 ENSG00000167850 CD300C CLM-6|CMRF-35|CMRF-35A|CMRF35|CMRF35-A1|CMRF35A|CMRF35A1|IGSF16|LIR CD300c molecule protein-coding 562-15 chr1 234244958 234245151 + 3 NA intron (NM_173508, intron 3 of 7) L1MA4A|LINE|L1 30843 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 413-158 chr2 185431779 185432082 + 3 NA Intergenic L1MD|LINE|L1 -264858 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 545-131 chr20 41812455 41812825 + 3 NA Intergenic L1MDa|LINE|L1 -194263 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 831-51 chr8 139060424 139060867 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -146604 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 443-164 chr2 214303592 214303830 + 3 NA intron (NR_047660, intron 14 of 14) L1PB4|LINE|L1 -107343 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 807-27 chr2 104728518 104729072 + 3 NA Intergenic Intergenic 28924 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 451-230 chr8 96380531 96380750 + 3 NA intron (NR_125828, intron 2 of 2) intron (NR_125828, intron 2 of 2) 6008 NR_125829 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 810 chr1 29662851 29663347 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -312985 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 163-22 chr11 6864477 6864587 + 3 NA Intergenic Intergenic -5223 NM_001004460 341276 Hs.371762 NM_001004460 ENSG00000170790 OR10A2 OR10A2P|OR11-82|OR11-86|OST363 olfactory receptor family 10 subfamily A member 2 protein-coding 810-21 chr19 57641763 57642179 + 3 NA exon (NM_006385, exon 4 of 4) exon (NM_006385, exon 4 of 4) 8803 NM_198855 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 561-82 chr18 4840954 4841171 + 3 NA Intergenic LTR16|LTR|ERVL -240120 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 488-13 chr1 165695635 165695852 + 3 NA intron (NM_000696, intron 1 of 10) AluSx3|SINE|Alu 2819 NM_001365774 223 Hs.2533 NM_000696 ENSG00000143149 ALDH9A1 ALDH4|ALDH7|ALDH9|E3|TMABADH aldehyde dehydrogenase 9 family member A1 protein-coding 359-464 chr8 50765718 50765980 + 3 NA intron (NR_135797, intron 20 of 20) intron (NR_135797, intron 20 of 20) 601718 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 705-63 chr21 22590179 22590642 + 3 NA Intergenic Intergenic -488874 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 681-87 chr8 132032940 132033264 + 3 NA exon (NM_001080399, exon 11 of 14) exon (NM_001080399, exon 11 of 14) 26280 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 425-286 chr7 53910657 53910933 + 3 NA Intergenic Intergenic -98864 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 471-248 chr7 21864257 21864444 + 3 NA intron (NM_001277115, intron 69 of 81) intron (NM_001277115, intron 69 of 81) 81549 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 496-200 chr4 107482768 107483088 + 3 NA Intergenic L1PA17|LINE|L1 237306 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 618-85 chr3 141672610 141672817 + 3 NA intron (NR_136190, intron 2 of 7) L1PA5|LINE|L1 9514 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 765-21 chr15 73411063 73411635 + 3 NA Intergenic MIRb|SINE|MIR -31815 NM_001348772 283677 Hs.743574 NM_001042367 ENSG00000183324 REC114 C15orf60|CT147 REC114 meiotic recombination protein protein-coding 468-193 chr3 32577257 32577581 + 3 NA Intergenic AluJr|SINE|Alu -6495 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 527-207 chr5 52600084 52600387 + 3 NA Intergenic Intergenic -187681 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 384-203 chr20 42048013 42048228 + 3 NA Intergenic Intergenic -429743 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 458-262 chr8 110244377 110244582 + 3 NA Intergenic LTR77|LTR|ERV1 -268708 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 421-119 chr19 12132408 12132592 + 3 NA non-coding (NR_037802, exon 8 of 8) non-coding (NR_037802, exon 8 of 8) 7850 NM_021143 7568 Hs.512823 NM_021143 ENSG00000132010 ZNF20 KOX13 zinc finger protein 20 protein-coding 430-13 chr1 167816439 167816590 + 3 NA intron (NM_018417, intron 31 of 32) AluSx1|SINE|Alu 94532 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 453-101 chr18 75168298 75168527 + 3 NA Intergenic Intergenic 37101 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 384-343 chr7 33487542 33487731 + 3 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 358072 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 259-419 chr8 135289624 135289792 + 3 NA intron (NR_120395, intron 2 of 5) intron (NR_120395, intron 2 of 5) 55577 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 902-2 chr10 39066931 39067304 + 3 NA Intergenic ALR/Alpha|Satellite|centr 370521 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 506-157 chr2 159610145 159610369 + 3 NA intron (NM_001329857, intron 1 of 36) intron (NM_001329857, intron 1 of 36) -5037 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 858-36 chr5 63810248 63810743 + 3 NA Intergenic Intergenic 151797 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 539-37 chr11 93994656 93994970 + 3 NA Intergenic LOR1-int|LTR|ERV1 -26541 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 723-74 chr8 53078754 53079220 + 3 NA Intergenic LTR47A2|LTR|ERVL 139079 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 505-168 chr2 226449979 226450240 + 3 NA Intergenic Intergenic 208684 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 309-485 chr6 101214982 101215188 + 3 NA Intergenic Intergenic -183900 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 539-15 chr1 175893466 175893753 + 3 NA Intergenic AluJb|SINE|Alu 16266 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 279-407 chr8 14194416 14194562 + 3 NA intron (NM_139167, intron 4 of 7) L3|LINE|CR1 564799 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 234-114 chr15 71470213 71470368 + 3 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -76946 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 656-10 chr1 186279272 186279679 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -16798 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 456-256 chr5 110680644 110680849 + 3 NA intron (NM_001039763, intron 1 of 13) intron (NM_001039763, intron 1 of 13) 45925 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 501-236 chr7 11894526 11894750 + 3 NA Intergenic L1M7|LINE|L1 -62440 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 519-76 chr16 73462318 73462631 + 3 NA Intergenic L1MD1|LINE|L1 75669 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 230-259 chr4 43191720 43191812 + 3 NA Intergenic Intergenic 298500 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 333-418 chr4 158312614 158312826 + 3 NA Intergenic L1PA16|LINE|L1 102234 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 744-41 chr20 61284534 61284887 + 3 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) 32449 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 459-215 chr4 69812210 69812490 + 3 NA Intergenic Intergenic 47795 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 520-127 chr18 42143811 42144098 + 3 NA Intergenic L1PA16|LINE|L1 -42714 NR_046456 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 1365-8 chrX 124092319 124092982 + 3 NA intron (NM_001042750, intron 32 of 34) intron (NM_001042750, intron 32 of 34) 130944 NM_006603 10735 Hs.496710 NM_006603 ENSG00000101972 STAG2 NEDXCF|SA-2|SA2|SCC3B|bA517O1.1 stromal antigen 2 protein-coding 803-17 chr17 31662141 31662475 + 3 NA Intergenic MIR3|SINE|MIR 86897 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 341-584 chrX 116054579 116054823 + 3 NA Intergenic L1PA13|LINE|L1 -85590 NR_130730 642776 Hs.634316 NR_130730 ENSG00000235244 DANT2 - DXZ4 associated non-coding transcript 2, distal ncRNA 442-85 chr14 81610913 81611103 + 3 NA intron (NR_110074, intron 1 of 2) intron (NR_110074, intron 1 of 2) 12053 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 518-301 chr8 114812833 114813055 + 3 NA Intergenic L1M2|LINE|L1 855069 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 518-134 chr2 81174318 81174662 + 3 NA Intergenic L1MC1|LINE|L1 292456 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 927-20 chr6 54225239 54225779 + 3 NA intron (NM_138569, intron 10 of 12) intron (NM_138569, intron 10 of 12) -82932 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 287-283 chr4 52947051 52947213 + 3 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 84815 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 1301-2 chr3 146237111 146237856 + 3 NA intron (NM_001128304, intron 2 of 10) L1MB8|LINE|L1 13132 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 625-73 chr4 46061328 46061550 + 3 NA intron (NM_173536, intron 5 of 8) intron (NM_173536, intron 5 of 8) 62615 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 441-221 chr6 49138220 49138477 + 3 NA Intergenic Intergenic 324905 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 392-307 chr7 52377220 52377381 + 3 NA Intergenic Intergenic -658333 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 301-416 chr7 30378866 30379000 + 3 NA Intergenic L1ME1|LINE|L1 8883 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 446-203 chr3 155312367 155312656 + 3 NA Intergenic Intergenic -18828 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 676-97 chr5 129308941 129309413 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 87970 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 534-66 chr12 133060879 133061240 + 3 NA 3' UTR (NM_003428, exon 5 of 5) 3' UTR (NM_003428, exon 5 of 5) -19144 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 415-33 chr10 93118727 93119029 + 3 NA Intergenic AluSq2|SINE|Alu 44985 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 1254 chr13 54960443 54961039 + 3 NA Intergenic L1MB1|LINE|L1 -213713 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 395-319 chr7 121786653 121786882 + 3 NA Intergenic MER110-int|LTR|ERV1 -86394 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 421-17 chr1 194286946 194287119 + 3 NA Intergenic AluSp|SINE|Alu 982287 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 933-14 chr17 72536304 72536815 + 3 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 56245 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 1198-7 chr4 14774546 14775305 + 3 NA intron (NR_126435, intron 2 of 6) L1PB4|LINE|L1 113244 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 328-502 chr6 62054932 62055063 + 3 NA intron (NR_146874, intron 2 of 13) L1M5|LINE|L1 231228 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 472-94 chr15 24773020 24773318 + 3 NA Intergenic CpG -50439 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 387-402 chrX 79773097 79773287 + 3 NA Intergenic L1PA13|LINE|L1 -241561 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 288-101 chr13 84354071 84354240 + 3 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 213553 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 487-13 chr1 90857793 90858120 + 3 NA Intergenic Intergenic 6197 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 527-248 chr7 56265889 56266087 + 3 NA Intergenic AluJo|SINE|Alu -149571 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 788-24 chr17 71552544 71552951 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -350568 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 494-76 chr15 25147172 25147436 + 3 NA intron (NR_146177, intron 61 of 147) intron (NR_146177, intron 61 of 147) 11662 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 258-419 chr9 25746355 25746495 + 3 NA Intergenic L1M5|LINE|L1 -33631 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 852-19 chr17 69688670 69689106 + 3 NA intron (NR_109972, intron 3 of 4) L2|LINE|L2 94901 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 314-471 chr5 104373228 104373455 + 3 NA Intergenic Intergenic -726133 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 595-163 chr8 86692414 86692626 + 3 NA intron (NM_019098, intron 3 of 17) L1PBa|LINE|L1 51155 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 380-89 chr12 20065919 20066142 + 3 NA intron (NR_040098, intron 2 of 2) MSTA|LTR|ERVL-MaLR 51345 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 436-166 chr21 14843242 14843438 + 3 NA intron (NR_146322, intron 2 of 3) MER92-int|LTR|ERV1 75328 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 213-288 chr8 117773636 117773731 + 3 NA Intergenic Intergenic 147230 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 553-25 chr10 133547458 133547793 + 3 NA Intergenic L1PA10|LINE|L1 17958 NM_001143764 93426 Hs.553795 NM_130784 ENSG00000171772 SYCE1 C10orf94|CT76|POF12|SPGF15 synaptonemal complex central element protein 1 protein-coding 445-228 chr6 5945862 5946033 + 3 NA Intergenic L2c|LINE|L2 58097 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 520-268 chr6 164470504 164470883 + 3 NA Intergenic MER57C2|LTR|ERV1 351370 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 690-99 chr8 113631447 113631800 + 3 NA Intergenic MER52D|LTR|ERV1 -194684 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 425-48 chr11 3211125 3211368 + 3 NA Intergenic L1MEb|LINE|L1 -7086 NR_027138 283303 Hs.151154 NM_173590 ENSG00000236301 MRGPRG-AS1 C11orf36|HSD-40 MRGPRG antisense RNA 1 ncRNA 491-201 chr5 11785256 11785506 + 3 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 119065 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 465-163 chr21 31411868 31412059 + 3 NA intron (NM_001353690, intron 1 of 27) L1PB4|LINE|L1 -67609 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 407-139 chr2 52970081 52970330 + 3 NA Intergenic Intergenic -267590 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 580-9 chr1 180742441 180742792 + 3 NA intron (NR_137330, intron 2 of 12) L1MEf|LINE|L1 110594 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 922-37 chr8 118146694 118147295 + 3 NA intron (NR_146234, intron 4 of 5) MIRc|SINE|MIR -35175 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 713-54 chr3 31442983 31443385 + 3 NA Intergenic Intergenic -89741 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 774-53 chr21 41392593 41393101 + 3 NA intron (NM_002463, intron 6 of 13) AluSx|SINE|Alu -27711 NM_001144925 4599 Hs.517307 NM_002462 ENSG00000157601 MX1 IFI-78K|IFI78|MX|MxA MX dynamin like GTPase 1 protein-coding 687-69 chr21 29578501 29578862 + 3 NA intron (NM_000830, intron 13 of 16) intron (NM_000830, intron 13 of 16) -17359 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 638-80 chr3 20520542 20520795 + 3 NA Intergenic L1PB1|LINE|L1 178200 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 873-28 chr5 11032098 11032678 + 3 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -271154 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 562-33 chr11 54822997 54823211 + 3 NA Intergenic ALR/Alpha|Satellite|centr 116272 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 670-54 chr18 71587706 71588020 + 3 NA Intergenic L1ME3|LINE|L1 -8907 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 371-223 chr20 54936955 54937214 + 3 NA Intergenic Intergenic 461491 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 570-213 chrX 38366171 38366406 + 3 NA intron (NM_000531, intron 1 of 9) LTR78|LTR|ERV1 13684 NM_000531 5009 Hs.117050 NM_000531 ENSG00000036473 OTC OCTD ornithine carbamoyltransferase protein-coding 570-212 chr9 135212035 135212320 + 3 NA Intergenic MER52C|LTR|ERV1 30568 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 532-107 chr19 36341490 36341667 + 3 NA exon (NM_020917, exon 5 of 5) exon (NM_020917, exon 5 of 5) -9860 NR_038278 100506930 Hs.595153 NR_038278 ENSG00000232677 LINC00665 - long intergenic non-protein coding RNA 665 ncRNA 567-131 chr4 87812384 87812730 + 3 NA TTS (NM_004967) TTS (NM_004967) -8841 NM_001184694 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 841-9 chr13 90806465 90806838 + 3 NA Intergenic Intergenic 119946 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 313-158 chr14 84114970 84115163 + 3 NA Intergenic L1PA5|LINE|L1 -1156866 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 425-241 chr5 126064983 126065208 + 3 NA Intergenic Intergenic -114482 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 844 chr1 40497130 40497714 + 3 NA Intergenic AluSx1|SINE|Alu -11297 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 558-240 chrX 98026359 98026630 + 3 NA Intergenic L1PA14|LINE|L1 -461959 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 971 chr1 84832047 84832526 + 3 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 60920 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 316-294 chr2 152929425 152929571 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 210861 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 204-124 chr18 38618106 38618177 + 3 NA Intergenic Intergenic 961006 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 331-29 chr1 189343753 189343981 + 3 NA Intergenic Intergenic 1132143 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 884-49 chr9 78929313 78929930 + 3 NA Intergenic Intergenic 216045 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 497-200 chr4 59273723 59274028 + 3 NA Intergenic L1MEc|LINE|L1 260302 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 470-41 chr11 102040430 102040651 + 3 NA Intergenic L1ME3|LINE|L1 -6897 NM_001195005 85016 Hs.98328 NM_032930 ENSG00000137691 CFAP300 C11orf70|CILD38 cilia and flagella associated protein 300 protein-coding 746-87 chr8 127639143 127639570 + 3 NA Intergenic Intergenic 94611 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 401-88 chr14 49480338 49480621 + 3 NA Intergenic L2|LINE|L2 105901 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 1211-2 chr12 37873133 37873650 + 3 NA Intergenic ALR/Alpha|Satellite|centr -443383 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 515-65 chr14 40339338 40339591 + 3 NA Intergenic Intergenic -615247 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 649-120 chr9 34863489 34863869 + 3 NA Intergenic L1M1|LINE|L1 -25093 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 849-41 chr6 155923943 155924369 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -22641 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 486-192 chr22 34938012 34938289 + 3 NA intron (NR_138042, intron 1 of 4) L1MA6|LINE|L1 59766 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 290-128 chr14 47371927 47372095 + 3 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -28765 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 705-77 chr4 103989118 103989562 + 3 NA Intergenic Intergenic -269355 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 431-111 chr19 2880638 2880845 + 3 NA non-coding (NR_145838, exon 4 of 4) non-coding (NR_145838, exon 4 of 4) 13406 NR_145838 80032 Hs.287433 NM_024967 ENSG00000172000 ZNF556 - zinc finger protein 556 protein-coding 655-96 chr5 72436791 72437203 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 70413 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 510-169 chr20 55426333 55426532 + 3 NA intron (NR_110629, intron 2 of 2) L2b|LINE|L2 765 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 238-288 chr5 19054838 19054986 + 3 NA Intergenic Intergenic 831360 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 819-26 chr5 45082681 45083145 + 3 NA Intergenic L1MA9|LINE|L1 273966 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 445-166 chr22 32009350 32009620 + 3 NA intron (NR_149128, intron 4 of 4) L1MC|LINE|L1 -33776 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 513-129 chr2 66809542 66809908 + 3 NA Intergenic Intergenic -94711 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 471-272 chr8 127118595 127118777 + 3 NA Intergenic Intergenic -36465 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 377-58 chr10 130486280 130486419 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 349940 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 531-134 chr20 13060119 13060490 + 3 NA intron (NM_001349945, intron 3 of 12) LTR64|LTR|ERV1 51332 NM_001349945 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 1099-6 chr12 13657612 13658049 + 3 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -281085 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 784-65 chrX 65230488 65230920 + 3 NA Intergenic L1MA4|LINE|L1 -195963 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 482-183 chr4 61751507 61751710 + 3 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 410157 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 489-150 chr2 180829493 180829713 + 3 NA intron (NR_104324, intron 4 of 4) intron (NR_104324, intron 4 of 4) 137499 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 456-267 chr5 174484420 174484603 + 3 NA intron (NR_125806, intron 2 of 5) MLT1D|LTR|ERVL-MaLR 148157 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 615-64 chr2 98218567 98218920 + 3 NA intron (NR_144297, intron 14 of 18) intron (NR_144297, intron 14 of 18) 69210 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 744-73 chr8 50803378 50803795 + 3 NA Intergenic L1MD2|LINE|L1 639455 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 344-432 chr6 121108157 121108304 + 3 NA intron (NR_104452, intron 33 of 35) intron (NR_104452, intron 33 of 35) 226250 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 646-37 chr14 67182871 67183117 + 3 NA Intergenic AluJo|SINE|Alu -6446 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 493-32 chr10 53148209 53148433 + 3 NA Intergenic Intergenic -376621 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 1163-6 chr16 61506448 61507014 + 3 NA Intergenic Intergenic -450965 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 501-124 chr2 208006915 208007136 + 3 NA intron (NM_001080475, intron 1 of 7) intron (NM_001080475, intron 1 of 7) 18502 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 526-53 chr12 4600072 4600394 + 3 NA intron (NM_001371301, intron 10 of 14) L4_C_Mam|LINE|RTE-X -4630 NM_001282286 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 865-7 chr10 82179085 82179601 + 3 NA intron (NM_001165973, intron 2 of 10) L1MB1|LINE|L1 53577 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 474-126 chr2 14462809 14463098 + 3 NA Intergenic Intergenic -61995 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 426-97 chr16 62266943 62267126 + 3 NA Intergenic L1PREC2|LINE|L1 -230596 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 412-182 chr20 16136329 16136519 + 3 NA Intergenic L1MB7|LINE|L1 -150542 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 363-373 chr5 140000841 140001034 + 3 NA intron (NM_013983, intron 1 of 10) L2|LINE|L2 42362 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 463-71 chr12 128891446 128891624 + 3 NA intron (NM_001366888, intron 2 of 7) intron (NM_001366888, intron 2 of 7) 38057 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 446-206 chr3 191454263 191454464 + 3 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) -6800 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 404-14 chr1 98565026 98565236 + 3 NA Intergenic HAL1|LINE|L1 -96590 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 532-69 chr14 62515245 62515580 + 3 NA Intergenic Intergenic -375439 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 437-255 chr7 52560805 52561065 + 3 NA Intergenic Intergenic -474698 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 481-2 chr1 43739606 43739909 + 3 NA intron (NM_001270465, intron 2 of 7) intron (NM_001270465, intron 2 of 7) -12414 NR_125986 101929592 NR_125986 ENSG00000229444 LOC101929592 - uncharacterized LOC101929592 ncRNA 488-36 chr10 123714025 123714274 + 3 NA Intergenic L1MEd|LINE|L1 47794 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 622-45 chr18 1832610 1833019 + 3 NA Intergenic L1MEg|LINE|L1 -473185 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 469-241 chr6 47886769 47887038 + 3 NA intron (NM_001013732, intron 2 of 2) L2c|LINE|L2 99835 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 314-623 chrX 77107068 77107194 + 3 NA Intergenic L1MA9|LINE|L1 -92599 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 436-212 chr4 83173986 83174151 + 3 NA Intergenic Intergenic -59339 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 338-409 chr5 10919595 10919722 + 3 NA Intergenic Intergenic -158424 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 458-245 chr7 137704274 137704510 + 3 NA intron (NM_001321708, intron 1 of 32) L1M4|LINE|L1 141940 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 706-68 chr7 17903073 17903338 + 3 NA intron (NM_001350862, intron 1 of 25) MER5A1|DNA|hAT-Charlie 37289 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 376-255 chr3 101044119 101044294 + 3 NA Intergenic L1ME3C|LINE|L1 -50716 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 964-10 chr16 85974221 85974934 + 3 NA Intergenic Intergenic 56230 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 456-329 chr8 131249122 131249428 + 3 NA Intergenic Intergenic -208366 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 794-10 chr10 113688951 113689417 + 3 NA intron (NM_001227, intron 1 of 6) L1PBb|LINE|L1 9272 NM_033339 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 1073-13 chr4 158962345 158962858 + 3 NA intron (NM_152543, intron 2 of 4) intron (NM_152543, intron 2 of 4) 72628 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 386-374 chr9 28266155 28266332 + 3 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 453062 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 460-206 chr3 121380682 121380921 + 3 NA intron (NM_001348343, intron 22 of 27) intron (NM_001348343, intron 22 of 27) 165187 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 472-86 chr14 62679113 62679311 + 3 NA Intergenic Intergenic 366246 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 407-229 chr4 129633341 129633506 + 3 NA Intergenic Intergenic 138055 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 743-23 chr16 34583059 34583589 + 3 NA Intergenic Intergenic -201844 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 346-253 chr2 126135435 126135632 + 3 NA Intergenic L1ME3A|LINE|L1 -17548 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 760-13 chr12 74146401 74146714 + 3 NA intron (NR_038300, intron 6 of 6) AluSc5|SINE|Alu 146074 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 310-21 chr1 173524188 173524371 + 3 NA intron (NM_178527, intron 20 of 27) intron (NM_178527, intron 20 of 27) 46944 NM_004905 9588 Hs.120 NM_004905 ENSG00000117592 PRDX6 1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29 peroxiredoxin 6 protein-coding 426-299 chr8 99552608 99552818 + 3 NA intron (NM_017890, intron 30 of 61) L1MD2|LINE|L1 -15852 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 1032-6 chr12 40075133 40075667 + 3 NA intron (NM_052885, intron 1 of 9) L1MCa|LINE|L1 30681 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 238-54 chr10 115577694 115577817 + 3 NA intron (NM_207303, intron 26 of 28) L1MA9|LINE|L1 484390 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 704-19 chr12 38400773 38401056 + 3 NA Intergenic Kanga1d|DNA|TcMar-Tc2 84140 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 452-176 chr3 158078446 158078782 + 3 NA Intergenic AluSz|SINE|Alu 27549 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 835-6 chr1 245981931 245982513 + 3 NA intron (NM_022743, intron 5 of 11) AluJo|SINE|Alu 435190 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 520-193 chr3 126303118 126303380 + 3 NA Intergenic L1MEc|LINE|L1 54159 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 560-161 chr7 3737993 3738315 + 3 NA intron (NM_152744, intron 4 of 44) L1MA9|LINE|L1 -391531 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 456-50 chr11 85311949 85312120 + 3 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 315236 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 346-309 chr3 40106124 40106325 + 3 NA intron (NM_001284426, intron 1 of 14) intron (NM_001284426, intron 1 of 14) 6213 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 1116-2 chr1 217210134 217210607 + 3 NA Intergenic AluSx|SINE|Alu -72668 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 447-42 chr11 98134013 98134198 + 3 NA Intergenic Intergenic -886844 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 776-19 chr16 62735859 62736163 + 3 NA Intergenic Intergenic -699573 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 475-226 chr5 66721322 66721518 + 3 NA intron (NM_001290228, intron 1 of 4) L2a|LINE|L2 -107353 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 502-166 chr22 26606006 26606216 + 3 NA intron (NM_001887, intron 4 of 5) MER30|DNA|hAT-Charlie 11916 NM_001887 1414 Hs.37135 NM_001887 ENSG00000100122 CRYBB1 CATCN3|CTRCT17 crystallin beta B1 protein-coding 547-161 chr4 74714655 74714969 + 3 NA Intergenic Intergenic 79711 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 490-312 chr9 30350521 30350767 + 3 NA Intergenic L1PB3|LINE|L1 57810 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 582-71 chr2 79398134 79398421 + 3 NA Intergenic Intergenic 102567 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 593-97 chr3 22655456 22655822 + 3 NA Intergenic L1M1|LINE|L1 546939 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 394 chr1 31008443 31008611 + 3 NA intron (NM_001020658, intron 3 of 21) intron (NM_001020658, intron 3 of 21) -40290 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 405-219 chr4 32008992 32009289 + 3 NA intron (NR_134682, intron 2 of 3) intron (NR_134682, intron 2 of 3) 11761 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 797-52 chr7 50220617 50221055 + 3 NA Intergenic (CACTCC)n|Simple_repeat|Simple_repeat -83228 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 1173 chr10 128726948 128727469 + 3 NA Intergenic Intergenic -185625 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 378-207 chr19 53149341 53149554 + 3 NA intron (NM_001172675, intron 2 of 4) intron (NM_001172675, intron 2 of 4) 9606 NM_032584 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 531-39 chr11 102273563 102273846 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -43780 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 479-224 chr6 150376301 150376640 + 3 NA intron (NM_001318495, intron 1 of 4) LTR48B|LTR|ERV1 7458 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 390-217 chr21 22492698 22492926 + 3 NA Intergenic Intergenic 394195 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 560-201 chrX 65378333 65378579 + 3 NA Intergenic L1MA2|LINE|L1 -110279 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 685-79 chr6 14471893 14472160 + 3 NA Intergenic Intergenic -186572 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 371-240 chr3 76398526 76398710 + 3 NA Intergenic Intergenic -613069 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 349-74 chr10 81281944 81282128 + 3 NA Intergenic L1MCb|LINE|L1 -593158 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 230-288 chr5 25825450 25825610 + 3 NA Intergenic Intergenic 634577 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 300-235 chr20 20206460 20206631 + 3 NA intron (NM_015585, intron 17 of 26) L1MB8|LINE|L1 149899 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 399-128 chr19 44008175 44008361 + 3 NA intron (NM_006300, intron 2 of 4) MER70A|LTR|ERVL 5311 NM_006300 7773 Hs.193583 NM_006300 ENSG00000159882 ZNF230 FDZF2 zinc finger protein 230 protein-coding 755-74 chr9 28023211 28023494 + 3 NA intron (NM_152570, intron 5 of 6) L1MCa|LINE|L1 -449486 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 277-46 chr10 30485980 30486078 + 3 NA Intergenic Zaphod3|DNA|hAT-Tip100 51383 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 737-21 chr13 41388468 41388860 + 3 NA Intergenic Intergenic -53900 NR_002163 100506759 Hs.507861 NR_002163 OR7E37P OR7E48P|OST193|hg533 olfactory receptor family 7 subfamily E member 37 pseudogene pseudo 409-239 chr5 13207555 13207768 + 3 NA Intergenic Intergenic -174775 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 464-219 chr6 91550001 91550219 + 3 NA Intergenic Intergenic 28450 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 841-13 chr16 8200509 8201029 + 3 NA Intergenic Intergenic 389069 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 470-19 chr10 14200295 14200480 + 3 NA intron (NR_134578, intron 2 of 3) AluSx1|SINE|Alu 126103 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 523-252 chr6 149003796 149003980 + 3 NA intron (NM_005715, intron 5 of 7) intron (NM_005715, intron 5 of 7) 28773 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 302-470 chr8 131633185 131633361 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie -270820 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 331-564 chrX 40044535 40044682 + 3 NA Intergenic L1MC5a|LINE|L1 52858 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 477-77 chr12 59173984 59174198 + 3 NA Intergenic MIR|SINE|MIR -253553 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 470-39 chr11 94260312 94260552 + 3 NA Intergenic L1MA6|LINE|L1 -45205 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 297-458 chr8 34744506 34744633 + 3 NA Intergenic Intergenic -39352 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 392-266 chr5 159206549 159206875 + 3 NA intron (NM_001199380, intron 1 of 10) intron (NM_001199380, intron 1 of 10) 936 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 839-2 chr1 247623597 247623900 + 3 NA Intergenic Intergenic 18162 NM_001001914 81469 Hs.653227 NM_001001914 ENSG00000177476 OR2G3 OR1-33 olfactory receptor family 2 subfamily G member 3 protein-coding 378-281 chr3 54012402 54012588 + 3 NA Intergenic L1ME4a|LINE|L1 -110057 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 555-35 chr11 87628520 87628856 + 3 NA Intergenic Intergenic 90723 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 443-111 chr15 99117375 99117569 + 3 NA intron (NM_145728, intron 2 of 3) intron (NM_145728, intron 2 of 3) 12392 NM_015286 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 740-12 chr10 41756491 41756911 + 3 NA Intergenic ALR/Alpha|Satellite|centr 611344 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 972-9 chr2 72053793 72054262 + 3 NA Intergenic L1ME3F|LINE|L1 93835 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 786-19 chr12 112927898 112928357 + 3 NA intron (NM_001320151, intron 5 of 5) LTR78|LTR|ERV1 -10347 NM_006187 4940 Hs.528634 NM_006187 ENSG00000111331 OAS3 p100|p100OAS 2'-5'-oligoadenylate synthetase 3 protein-coding 626-17 chr10 74566454 74566815 + 3 NA intron (NM_001369123, intron 7 of 9) intron (NM_001369123, intron 7 of 9) -37310 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 515-255 chr7 94748197 94748394 + 3 NA Intergenic L1MD|LINE|L1 91925 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 287-199 chr2 78913775 78913939 + 3 NA Intergenic Intergenic -111845 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 475-213 chr5 7646093 7646336 + 3 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 204919 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 1085-3 chr11 116066103 116066704 + 3 NA Intergenic Intergenic -306203 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 499-226 chr6 93038265 93038455 + 3 NA Intergenic Intergenic 381199 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 398-345 chr8 52501246 52501443 + 3 NA Intergenic Intergenic 64086 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 705-64 chr21 22832106 22832505 + 3 NA Intergenic L1PA15-16|LINE|L1 -246979 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 547-134 chr3 20447163 20447514 + 3 NA Intergenic Intergenic 104870 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 311-331 chr3 20621135 20621291 + 3 NA Intergenic Intergenic 278745 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 387-343 chr7 51940476 51940681 + 3 NA Intergenic Intergenic -547322 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 437-141 chr2 126695642 126695793 + 3 NA intron (NM_001256584, intron 4 of 4) MER47A|DNA|TcMar-Tigger 39559 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 540-5 chr1 58789242 58789629 + 3 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 4284 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 394-68 chr11 129415365 129415622 + 3 NA intron (NM_003658, intron 1 of 3) intron (NM_003658, intron 1 of 3) 39645 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 275-111 chr14 64446076 64446261 + 3 NA intron (NM_005956, intron 22 of 27) intron (NM_005956, intron 22 of 27) -19331 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 491-231 chr6 124388930 124389236 + 3 NA intron (NM_153355, intron 3 of 5) Tigger17a|DNA|TcMar-Tigger 106078 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 465-46 chr11 37520499 37520776 + 3 NA Intergenic L1MA2|LINE|L1 -417964 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 750-12 chr11 112773798 112774139 + 3 NA Intergenic Intergenic -187452 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 626-85 chr21 31255623 31255975 + 3 NA intron (NM_001353686, intron 4 of 27) intron (NM_001353686, intron 4 of 27) 88555 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 1093-2 chr11 133300834 133301342 + 3 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 231413 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 482-266 chr8 74082956 74083118 + 3 NA Intergenic LTR48B|LTR|ERV1 91645 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 454-119 chr17 71222141 71222302 + 3 NA Intergenic L2a|LINE|L2 -20042 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 311-560 chrX 80453805 80453973 + 3 NA Intergenic Intergenic 33442 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 462-89 chr15 38984392 38984622 + 3 NA Intergenic Intergenic -266162 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 486-178 chr20 56219361 56219664 + 3 NA Intergenic MER4A1_|LTR|ERV1 -29220 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 427-275 chr9 77670657 77670879 + 3 NA Intergenic MER31B|LTR|ERV1 -22446 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 699-84 chr5 93319966 93320450 + 3 NA Intergenic Intergenic 251135 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 437-192 chr4 63067054 63067354 + 3 NA Intergenic L1MC1|LINE|L1 -905439 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 468-290 chr6 168482357 168482578 + 3 NA intron (NM_001166412, intron 1 of 12) L1MB3|LINE|L1 41283 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 610-8 chr1 197499056 197499429 + 3 NA Intergenic L1MEf|LINE|L1 230990 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 894-17 chr2 6845286 6845743 + 3 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -5050 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 446-54 chr10 111422568 111422811 + 3 NA Intergenic Intergenic 308398 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 526-131 chr2 106896891 106897211 + 3 NA Intergenic Intergenic -9942 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 306-401 chr5 98321314 98321546 + 3 NA Intergenic Intergenic -160191 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 640-53 chr18 56386651 56386941 + 3 NA Intergenic L2b|LINE|L2 -195534 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 254-154 chr17 56713072 56713263 + 3 NA Intergenic Intergenic 119468 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 404-85 chr13 21541169 21541427 + 3 NA intron (NM_152726, intron 2 of 11) intron (NM_152726, intron 2 of 11) 62872 NM_152726 221154 Hs.412103 NM_152726 ENSG00000165487 MICU2 1110008L20Rik|EFHA1 mitochondrial calcium uptake 2 protein-coding 580-38 chr12 45717176 45717577 + 3 NA Intergenic Intergenic 10545 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 284-136 chr15 61533953 61534126 + 3 NA Intergenic MIRb|SINE|MIR -195879 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 506-271 chr7 64526610 64526919 + 3 NA intron (NM_001130022, intron 3 of 3) intron (NM_001130022, intron 3 of 3) 36307 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 449-148 chr21 16690912 16691080 + 3 NA Intergenic L2a|LINE|L2 100759 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 435-249 chr8 110275624 110275827 + 3 NA Intergenic Intergenic -299954 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 281-181 chr18 68919264 68919435 + 3 NA intron (NM_001093729, intron 8 of 9) intron (NM_001093729, intron 8 of 9) 121269 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 407-234 chr4 168217202 168217445 + 3 NA intron (NM_017631, intron 37 of 37) intron (NM_017631, intron 37 of 37) 101429 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 752-46 chr20 52647857 52648236 + 3 NA non-coding (NR_110038, exon 3 of 3) non-coding (NR_110038, exon 3 of 3) 27208 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 689-4 chr1 117238252 117238652 + 3 NA Intergenic Intergenic -27492 NM_001253850 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 351-160 chr16 51586195 51586386 + 3 NA Intergenic L2a|LINE|L2 -176229 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 620-44 chr15 98832567 98832888 + 3 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 48301 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 539-71 chr14 78111647 78111863 + 3 NA Intergenic L1MEc|LINE|L1 -58618 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 460-223 chr4 84263389 84263684 + 3 NA intron (NR_125909, intron 4 of 8) L1PB4|LINE|L1 35633 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 372-109 chr12 39021830 39022035 + 3 NA Intergenic L1MA2|LINE|L1 -116341 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 734-73 chr7 112239378 112239900 + 3 NA intron (NM_021994, intron 1 of 11) L1MA3|LINE|L1 32944 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 364-378 chr6 40749589 40749752 + 3 NA Intergenic Intergenic -162306 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 465-113 chr18 8864696 8864951 + 3 NA Intergenic Intergenic 147442 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 408-154 chr2 48895030 48895207 + 3 NA Intergenic Intergenic -139394 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 448-149 chr22 47967590 47967780 + 3 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -306679 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 588-33 chr13 92922520 92922935 + 3 NA Intergenic LTR80A|LTR|ERVL -122614 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 436-81 chr14 43753229 43753514 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 753912 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 655-139 chrX 79525714 79526039 + 3 NA Intergenic L1PA15-16|LINE|L1 -158324 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 759-3 chr1 113527391 113527816 + 3 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 137088 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 777-45 chr3 99491174 99491557 + 3 NA Intergenic L1MA1|LINE|L1 -147229 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 345-34 chr1 192146217 192146430 + 3 NA Intergenic L1MC3|LINE|L1 -12139 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 632-113 chr8 21546132 21546474 + 3 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 242572 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 421-179 chr3 14709995 14710139 + 3 NA intron (NM_001184957, intron 7 of 16) L1M4|LINE|L1 34926 NM_032137 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 491-84 chr16 73414051 73414341 + 3 NA intron (NR_038234, intron 1 of 2) intron (NR_038234, intron 1 of 2) 27391 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 607-66 chr2 11012321 11012769 + 3 NA Intergenic Intergenic 100611 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 787-16 chr19 56583031 56583465 + 3 NA TTS (NM_001001668) TTS (NM_001001668) -12048 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 864-51 chr8 131260325 131260802 + 3 NA Intergenic Intergenic -219654 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 655-79 chr3 44715934 44716271 + 3 NA intron (NM_033210, intron 2 of 3) intron (NM_033210, intron 2 of 3) 3442 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 285-178 chr19 37959763 37959966 + 3 NA intron (NM_015073, intron 1 of 21) L1M4a2|LINE|L1 52656 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 499-289 chrX 39442909 39443124 + 3 NA Intergenic L2a|LINE|L2 -51242 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 611-69 chr19 34024275 34024629 + 3 NA Intergenic HAL1M8|LINE|L1 -148052 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 333-213 chr19 36629442 36629610 + 3 NA 3' UTR (NM_032825, exon 5 of 5) 3' UTR (NM_032825, exon 5 of 5) 24213 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 592-86 chr2 108890661 108891011 + 3 NA Intergenic L1MA4A|LINE|L1 98384 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 372-449 chr7 4860521 4860712 + 3 NA exon (NM_020144, exon 1 of 1) exon (NM_020144, exon 1 of 1) 1414 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 544-191 chr5 162826995 162827286 + 3 NA Intergenic Intergenic -610431 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 475-241 chr6 76215101 76215304 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -142524 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 335-139 chr13 52874818 52875030 + 3 NA Intergenic Intergenic -26284 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 670-26 chr12 10261815 10262314 + 3 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) 23103 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 478-294 chr8 105264904 105265252 + 3 NA Intergenic L1M1|LINE|L1 -53360 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 345-525 chr8 92261088 92261221 + 3 NA Intergenic L1MC4a|LINE|L1 -157769 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 548-38 chr11 81984882 81985083 + 3 NA intron (NR_120571, intron 6 of 7) L1MC3|LINE|L1 -94146 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 200-140 chr2 128024135 128024213 + 3 NA intron (NM_001330303, intron 2 of 19) intron (NM_001330303, intron 2 of 19) 3121 NM_001145928 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 404-185 chr2 223108619 223108843 + 3 NA Intergenic Intergenic 56801 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 470-221 chr5 124462408 124462662 + 3 NA Intergenic Intergenic -24015 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 380-171 chr2 21618585 21618890 + 3 NA Intergenic Intergenic 91915 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 793-52 chr8 135422862 135423342 + 3 NA Intergenic MIRb|SINE|MIR -34354 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 513-181 chr3 74145937 74146176 + 3 NA Intergenic Intergenic 336812 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 626-18 chr10 98625173 98625522 + 3 NA intron (NM_021828, intron 7 of 11) X7A_LINE|LINE|CR1 -178384 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 417-116 chr18 33078380 33078612 + 3 NA intron (NM_001308126, intron 21 of 23) L1PREC2|LINE|L1 -305473 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 326-58 chr10 22107364 22107581 + 3 NA Intergenic L1MA8|LINE|L1 102511 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 339-188 chr16 9553233 9553414 + 3 NA Intergenic Intergenic -97818 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 745-68 chr7 39325237 39325530 + 3 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 3751 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 457-123 chr2 129816134 129816316 + 3 NA Intergenic LTR26|LTR|ERV1 61266 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 520-95 chr14 83179153 83179333 + 3 NA Intergenic MER4D|LTR|ERV1 536611 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 522-246 chr8 75561690 75562005 + 3 NA intron (NM_001330561, intron 11 of 11) MIRc|SINE|MIR 21879 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 564-158 chr5 118228238 118228525 + 3 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -54193 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 636-152 chr8 128497393 128497789 + 3 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 67088 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 807-46 chr8 29509203 29509683 + 3 NA Intergenic Intergenic -158759 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 431-212 chr4 125954471 125954642 + 3 NA Intergenic Intergenic 447297 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 415-186 chr3 104225181 104225427 + 3 NA Intergenic Intergenic -701188 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 1253-5 chr19 36395754 36396351 + 3 NA intron (NM_001321917, intron 4 of 4) AluSz|SINE|Alu -16851 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 381-326 chr6 11151781 11152009 + 3 NA Intergenic L1MC5|LINE|L1 -40170 NM_207582 405754 Hs.631996 NM_207582 ENSG00000244476 ERVFRD-1 ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD endogenous retrovirus group FRD member 1, envelope protein-coding 422-79 chr14 62353901 62354177 + 3 NA Intergenic L1PA4|LINE|L1 -214066 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 524-122 chr2 158412464 158412775 + 3 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 44134 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 266-204 chr2 181995034 181995238 + 3 NA intron (NM_001261425, intron 2 of 5) intron (NM_001261425, intron 2 of 5) 9283 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 868-16 chr19 40129756 40130382 + 3 NA Intergenic L1M4|LINE|L1 -39126 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 381-101 chr14 30147496 30147688 + 3 NA Intergenic L1M2|LINE|L1 -219745 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 701-66 chr4 31986456 31986819 + 3 NA Intergenic PABL_B-int|LTR|ERV1 -10742 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 441-110 chr19 57468780 57469072 + 3 NA TTS (NM_001330613) TTS (NM_001330613) 8640 NM_001330613 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 473-250 chr6 158904561 158904760 + 3 NA intron (NR_160979, intron 2 of 2) L1ME3C|LINE|L1 16183 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 550-83 chr16 7682996 7683283 + 3 NA intron (NM_145892, intron 11 of 12) intron (NM_145892, intron 11 of 12) 350294 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 695-25 chr12 14062986 14063480 + 3 NA Intergenic Intergenic -82877 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 526-55 chr12 16834107 16834415 + 3 NA Intergenic Intergenic -154486 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 547-105 chr2 116473697 116473963 + 3 NA Intergenic Intergenic 1130015 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 379-121 chr17 71111186 71111450 + 3 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 90861 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 506-117 chr19 11878161 11878370 + 3 NA Intergenic ERVL47-int|LTR|ERVL -9517 NM_001364731 7620 Hs.565280 NM_021915 ENSG00000198429 ZNF69 Cos5|hZNF3 zinc finger protein 69 protein-coding 903-13 chr14 60014639 60015144 + 3 NA intron (NR_075071, intron 23 of 32) L1MDa|LINE|L1 -77020 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 450-170 chr20 58151852 58152150 + 3 NA intron (NM_178456, intron 1 of 3) MER113|DNA|hAT-Charlie 1099 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 762-12 chr11 41391419 41391926 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 67964 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 487-231 chr5 77795134 77795381 + 3 NA Intergenic L1MB5|LINE|L1 -18896 NM_004607 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 653-86 chr3 89646019 89646288 + 3 NA Intergenic L1ME3A|LINE|L1 538532 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 604-169 chr8 129289612 129290041 + 3 NA Intergenic MIR|SINE|MIR -48586 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 734-9 chr10 56800091 56800493 + 3 NA Intergenic MIR|SINE|MIR -439019 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 598-130 chr7 55825273 55825568 + 3 NA intron (NM_207366, intron 6 of 9) L1MC2|LINE|L1 37332 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 536-100 chr18 1233242 1233524 + 3 NA Intergenic L1PA13|LINE|L1 126246 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 439-205 chr4 58378449 58378637 + 3 NA Intergenic L1PA17|LINE|L1 157785 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 416-264 chr5 8729765 8729916 + 3 NA Intergenic Intergenic -109892 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 410-280 chr7 53282844 53283074 + 3 NA Intergenic L1PA6|LINE|L1 247326 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 519-191 chr6 23768603 23768831 + 3 NA Intergenic Intergenic -357498 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 819-34 chr8 125951577 125952016 + 3 NA promoter-TSS (NR_038447) promoter-TSS (NR_038447) -599 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 528-264 chr9 120253625 120253824 + 3 NA Intergenic L1ME3|LINE|L1 -8674 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 580-18 chr10 66439850 66440173 + 3 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -486025 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 641-38 chr14 104260941 104261228 + 3 NA intron (NR_146612, intron 1 of 2) L1ME1|LINE|L1 37500 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 682-94 chr7 8028764 8029118 + 3 NA intron (NM_138426, intron 3 of 7) L1MA2|LINE|L1 60145 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 513-278 chr8 67580116 67580335 + 3 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 166135 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 555-213 chr8 139485348 139485673 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 217613 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 208-193 chr4 114840162 114840299 + 3 NA intron (NM_022569, intron 10 of 13) intron (NM_022569, intron 10 of 13) 183471 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 338-545 chr8 99259883 99260132 + 3 NA intron (NM_017890, intron 17 of 61) L1MEd|LINE|L1 246741 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 755-60 chr7 10474045 10474574 + 3 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -228367 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 696-64 chr20 39346535 39346938 + 3 NA Intergenic L1ME3|LINE|L1 -121988 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 589-49 chr18 13847221 13847604 + 3 NA Intergenic AluSq2|SINE|Alu 23263 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 585-103 chr4 27947962 27948293 + 3 NA Intergenic Intergenic 730648 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 510-292 chr9 32879257 32879509 + 3 NA Intergenic MIRb|SINE|MIR 95843 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 356-202 chr17 80486650 80486877 + 3 NA Intergenic Intergenic -10156 NM_002522 4884 Hs.514556 NM_002522 ENSG00000171246 NPTX1 NP1 neuronal pentraxin 1 protein-coding 913-3 chr1 168626828 168627375 + 3 NA Intergenic Intergenic 50496 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 308-505 chr8 115051201 115051435 + 3 NA Intergenic L1MB1|LINE|L1 616695 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 584-47 chr15 99394935 99395316 + 3 NA Intergenic L1MB7|LINE|L1 137600 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 503-286 chr8 124480482 124480829 + 3 NA intron (NM_007218, intron 1 of 1) MER21B|LTR|ERVL 5888 NM_007218 11236 Hs.744151 NM_007218 ENSG00000170881 RNF139 HRCA1|RCA1|TRC8 ring finger protein 139 protein-coding 781-42 chr3 82952067 82952384 + 3 NA Intergenic L1MB7|LINE|L1 966083 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 538-115 chr2 109067317 109067590 + 3 NA Intergenic Intergenic -61752 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 321-11 chr1 62862831 62862965 + 3 NA intron (NM_178221, intron 10 of 10) intron (NM_178221, intron 10 of 10) 78766 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 592-12 chr10 25394394 25394738 + 3 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -218290 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 393-365 chr8 121683473 121683667 + 3 NA Intergenic L1MB8|LINE|L1 -42130 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 452-281 chr8 140155852 140156084 + 3 NA intron (NM_001160372, intron 17 of 22) MIR3|SINE|MIR -55433 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 309-535 chr8 64271220 64271380 + 3 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 97258 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 378-146 chr14 83578695 83578860 + 3 NA Intergenic LTR33C|LTR|ERVL 936145 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 561-108 chr2 213433650 213433894 + 3 NA intron (NR_047660, intron 8 of 14) L1PB4|LINE|L1 149308 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 463-98 chr15 68396584 68396888 + 3 NA intron (NM_001004439, intron 2 of 29) L1MEg|LINE|L1 35427 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 486-36 chr10 96901353 96901640 + 3 NA intron (NM_001170766, intron 2 of 8) HAL1ME|LINE|L1 68551 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 224-179 chr20 54474821 54474948 + 3 NA promoter-TSS (NM_001294161) promoter-TSS (NM_001294161) -709 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 241-174 chr2 15785740 15785858 + 3 NA Intergenic Intergenic 95017 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 343-417 chr5 26454893 26455062 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 583609 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 402-149 chr2 66158888 66159111 + 3 NA Intergenic L1MEc|LINE|L1 199329 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 270-70 chr12 1069194 1069310 + 3 NA intron (NR_027949, intron 2 of 15) intron (NR_027949, intron 2 of 15) 41504 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 383-289 chr4 86687401 86687601 + 3 NA intron (NM_080685, intron 4 of 47) intron (NM_080685, intron 4 of 47) 93186 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 500-228 chr5 60871578 60871873 + 3 NA Intergenic Intergenic -27451 NM_001104558 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 463-30 chr1 218103861 218104061 + 3 NA Intergenic L2a|LINE|L2 60456 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 441-269 chr8 126392922 126393159 + 3 NA Intergenic Intergenic 67545 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 1695 chr10 42540681 42541473 + 3 NA intron (NR_026777, intron 5 of 7) L1M4c|LINE|L1 11793 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 658-5 chr1 71703354 71703744 + 3 NA intron (NM_173808, intron 3 of 6) L1MEc|LINE|L1 133463 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 682-15 chr11 48262080 48262436 + 3 NA Intergenic Intergenic -1603 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 532-101 chr18 61386927 61387176 + 3 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 53621 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 293-429 chr8 54594931 54595049 + 3 NA Intergenic Intergenic -21106 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 540-31 chr10 77315454 77315665 + 3 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 35202 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 476-209 chr5 7938100 7938350 + 3 NA Intergenic Intergenic 69077 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 504-104 chr18 11579746 11579959 + 3 NA Intergenic Intergenic -29706 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 610-93 chr2 211522526 211522847 + 3 NA intron (NM_001042599, intron 20 of 26) Tigger1|DNA|TcMar-Tigger 903674 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 225-288 chr5 118158733 118158901 + 3 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -123757 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 527-172 chr3 45138718 45139011 + 3 NA intron (NM_178181, intron 1 of 3) AluSx1|SINE|Alu 7514 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 699-25 chr13 30247661 30248155 + 3 NA intron (NM_032116, intron 4 of 10) intron (NM_032116, intron 4 of 10) 59103 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 535-231 chr7 110213029 110213342 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -252972 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 751-79 chr8 82615056 82615514 + 3 NA Intergenic L1MD|LINE|L1 -296819 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 749-2 chr1 57456386 57456705 + 3 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -31624 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 791-68 chr8 120787184 120787569 + 3 NA intron (NM_021021, intron 1 of 6) L1PB3|LINE|L1 24670 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 537-213 chr6 51502553 51502848 + 3 NA Intergenic Intergenic -119170 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 316-249 chr2 12895929 12896116 + 3 NA Intergenic Intergenic 110991 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 350-232 chr2 106879444 106879600 + 3 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 6506 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 483-266 chr8 84173951 84174236 + 3 NA Intergenic Intergenic -8694 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 422-279 chr7 40253005 40253181 + 3 NA intron (NM_001193312, intron 7 of 12) MIRb|SINE|MIR 118117 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 526-184 chr4 88736247 88736558 + 3 NA intron (NM_001265579, intron 14 of 16) intron (NM_001265579, intron 14 of 16) 26613 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 362-54 chr10 39032173 39032314 + 3 NA Intergenic ALR/Alpha|Satellite|centr 335647 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 412-49 chr11 34291800 34292045 + 3 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 66088 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 871-4 chr11 36233528 36234125 + 3 NA Intergenic AluY|SINE|Alu 55598 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 747-5 chr1 113846329 113846735 + 3 NA intron (NM_012411, intron 9 of 18) L1MDa|LINE|L1 -10103 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 721-30 chr18 14009440 14009909 + 3 NA Intergenic L1PA16|LINE|L1 -93967 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 447-160 chr22 34513624 34513880 + 3 NA Intergenic MIR|SINE|MIR 484164 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 601-94 chr3 102343480 102343857 + 3 NA Intergenic MER34|LTR|ERV1 -91347 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 432-279 chr8 16582459 16582706 + 3 NA Intergenic L1M4|LINE|L1 -389791 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 942-14 chr2 66989954 66990482 + 3 NA Intergenic Intergenic -67728 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 902-34 chr7 48775094 48775665 + 3 NA Intergenic Intergenic -149168 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 753-53 chr6 151215401 151215848 + 3 NA intron (NR_125868, intron 1 of 2) intron (NR_125868, intron 1 of 2) 12833 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 1068-2 chr1 105339350 105339889 + 3 NA Intergenic Intergenic 279316 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 682-59 chr21 29216083 29216394 + 3 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 22744 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 428-38 chr11 74668805 74669069 + 3 NA Intergenic L2|LINE|L2 42430 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 948-35 chr8 121070336 121070752 + 3 NA Intergenic L1M4b|LINE|L1 -258498 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 267-256 chr3 64592930 64593046 + 3 NA intron (NM_001318781, intron 27 of 38) intron (NM_001318781, intron 27 of 38) 31642 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 241-352 chr6 163895182 163895328 + 3 NA Intergenic Intergenic -223771 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 372-57 chr10 89462698 89462873 + 3 NA intron (NR_120614, intron 2 of 2) intron (NR_120614, intron 2 of 2) 6794 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 862-18 chr2 53542429 53542900 + 3 NA Intergenic Intergenic -225119 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 498-244 chr7 25251159 25251440 + 3 NA Intergenic HERVL40-int|LTR|ERVL -22813 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 469-69 chr12 109024301 109024653 + 3 NA intron (NM_001301175, intron 1 of 15) AluJb|SINE|Alu 1388 NM_001301175 84749 Hs.486434 NM_032663 ENSG00000135093 USP30 - ubiquitin specific peptidase 30 protein-coding 633-41 chr14 45421579 45421948 + 3 NA Intergenic MER57-int|LTR|ERV1 -168561 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 670-56 chr2 7354880 7355328 + 3 NA Intergenic Intergenic -66157 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 429-177 chr20 54710506 54710783 + 3 NA Intergenic Intergenic 235051 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 306-10 chr1 73546478 73546687 + 3 NA Intergenic L1MC4|LINE|L1 -128097 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 617-41 chr15 26743949 26744345 + 3 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) -27382 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 881-28 chr3 188682004 188682428 + 3 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) -6565 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 620-33 chr14 39442655 39442966 + 3 NA Intergenic Intergenic -10310 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 802-54 chr5 32188231 32188629 + 3 NA Intergenic Intergenic -14111 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 294-137 chr15 54756176 54756368 + 3 NA Intergenic L1PA14|LINE|L1 -300475 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 315-201 chr18 64435150 64435346 + 3 NA Intergenic Intergenic -175193 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 472-285 chr6 142879712 142879969 + 3 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 65336 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 846-10 chr11 114659486 114659981 + 3 NA Intergenic L1ME1|LINE|L1 -18794 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 794-38 chr6 14223566 14223943 + 3 NA Intergenic Intergenic 61700 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 563-192 chr9 35446152 35446353 + 3 NA intron (NR_003581, intron 8 of 17) intron (NR_003581, intron 8 of 17) 39497 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 486-160 chr2 166927700 166927894 + 3 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 39310 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 471-2 chr1 19812968 19813248 + 3 NA TTS (NM_019062) TTS (NM_019062) 2175 NM_019062 54546 Hs.124835 NM_019062 ENSG00000178828 RNF186 - ring finger protein 186 protein-coding 493-221 chr4 30428720 30428948 + 3 NA Intergenic Intergenic -291535 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 426-231 chr5 39012722 39012948 + 3 NA intron (NM_001285439, intron 3 of 38) intron (NM_001285439, intron 3 of 38) 61564 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 396-385 chrX 95034954 95035201 + 3 NA Intergenic L1M3f|LINE|L1 28149 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 578-78 chr19 37740871 37741083 + 3 NA intron (NM_001172690, intron 4 of 4) MER2|DNA|TcMar-Tigger -21216 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 523-156 chr20 49703399 49703644 + 3 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 10357 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 450-236 chr5 25060889 25061146 + 3 NA Intergenic Intergenic 129639 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 857-51 chr8 78180794 78181169 + 3 NA Intergenic Intergenic -335359 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 631-30 chr12 37750536 37750918 + 3 NA Intergenic ALR/Alpha|Satellite|centr -566047 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 364-320 chr4 162677247 162677399 + 3 NA Intergenic L1P4d|LINE|L1 416305 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 468-328 chr8 134968629 134968871 + 3 NA Intergenic Intergenic 118815 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 365-39 chr10 18042811 18042947 + 3 NA 3' UTR (NM_152725, exon 12 of 12) 3' UTR (NM_152725, exon 12 of 12) -32317 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 832-23 chr21 19590761 19591258 + 3 NA Intergenic Intergenic 308746 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 765-52 chr5 17392139 17392479 + 3 NA Intergenic AluJb|SINE|Alu -4999 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 855-45 chr7 54716795 54717238 + 3 NA Intergenic Intergenic 42195 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 762-54 chr5 45991316 45991747 + 3 NA Intergenic ALR/Alpha|Satellite|centr -295151 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 228-244 chr4 62342862 62342988 + 3 NA Intergenic L1MEf|LINE|L1 -181160 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 470-207 chr5 7823605 7823930 + 3 NA intron (NM_020546, intron 24 of 24) intron (NM_020546, intron 24 of 24) 27366 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 517-264 chr8 82964024 82964277 + 3 NA Intergenic L1MEc|LINE|L1 52046 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 460-73 chr13 25644474 25644811 + 3 NA intron (NM_016529, intron 24 of 36) L1ME3F|LINE|L1 175868 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 257-289 chr4 21190770 21190945 + 3 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 113049 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 418-60 chr12 129563156 129563368 + 3 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 340763 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 663-49 chr18 69593077 69593511 + 3 NA intron (NM_152721, intron 2 of 7) AluJr|SINE|Alu 123363 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 313-163 chr15 34257443 34257639 + 3 NA intron (NM_001042496, intron 6 of 25) intron (NM_001042496, intron 6 of 25) 32525 NM_001351373 51234 Hs.250905 NM_016454 ENSG00000128463 EMC4 PIG17|TMEM85 ER membrane protein complex subunit 4 protein-coding 554-32 chr10 75663122 75663377 + 3 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 15740 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 379-129 chr18 22029212 22029413 + 3 NA Intergenic L3b|LINE|CR1 139656 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 380 chr1 33956221 33956370 + 3 NA intron (NM_052896, intron 3 of 69) L1MB3|LINE|L1 87339 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 436-132 chr2 65509954 65510235 + 3 NA Intergenic L1MD3|LINE|L1 -77495 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 563-56 chr14 85751331 85751720 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -183153 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 648-112 chr5 61987509 61987833 + 3 NA Intergenic L1MC4a|LINE|L1 -251973 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 412-88 chr14 50375141 50375354 + 3 NA intron (NM_001282236, intron 2 of 8) L1MC3|LINE|L1 21634 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 361-141 chr14 66576529 66576821 + 3 NA intron (NM_001024218, intron 1 of 21) MamRep1879|DNA|hAT-Tip100? 69268 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 389-382 chr9 87790240 87790400 + 3 NA Intergenic Intergenic 17405 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 349-381 chr4 101318829 101319027 + 3 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 11486 NR_031656 100302193 NR_031656 ENSG00000221265 MIR1255A MIRN1255A|hsa-mir-1255a microRNA 1255a ncRNA 254-73 chr12 18954533 18954624 + 3 NA Intergenic Intergenic -175155 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 693-27 chr14 30829909 30830342 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -44410 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 537-61 chr14 19935862 19936087 + 3 NA exon (NM_001004063, exon 1 of 1) exon (NM_001004063, exon 1 of 1) 366 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 514-65 chr12 82110547 82110831 + 3 NA Intergenic Intergenic 156970 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 973-19 chr3 7439817 7440189 + 3 NA intron (NM_000844, intron 5 of 9) L2|LINE|L2 95281 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 365-93 chr12 20957117 20957260 + 3 NA intron (NM_001371097, intron 13 of 15) L1PA7|LINE|L1 -58508 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 484-231 chr5 167554227 167554434 + 3 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -19329 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 507-270 chr9 24584769 24585053 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -39014 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 666-12 chr10 114983378 114983836 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -11050 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 410-109 chr18 1026998 1027225 + 3 NA Intergenic L1ME1|LINE|L1 -99118 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 537-40 chr11 50654796 50655137 + 3 NA Intergenic ALR/Alpha|Satellite|centr 245819 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 749-32 chr14 61982453 61982935 + 3 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 54999 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 649-111 chr8 118487464 118487915 + 3 NA intron (NM_001101676, intron 2 of 4) MIRb|SINE|MIR -133312 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 470-94 chr17 9883677 9884026 + 3 NA intron (NM_004246, intron 11 of 12) L1M4a2|LINE|L1 21420 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 246-53 chr10 67545369 67545482 + 3 NA intron (NM_001127384, intron 3 of 17) Tigger13a|DNA|TcMar-Tigger 120235 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 323-408 chr5 28326164 28326309 + 3 NA Intergenic Intergenic -38571 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 615-153 chrX 57004281 57004608 + 3 NA Intergenic L1PB4|LINE|L1 -8903 NM_001010862 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 1066-4 chr11 9638109 9638545 + 3 NA Intergenic Intergenic -25750 NM_015055 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 649-8 chr10 115820312 115820675 + 3 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 374296 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 344-10 chr1 76229207 76229425 + 3 NA intron (NM_001349108, intron 1 of 3) MER89|LTR|ERV1 154570 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 520-323 chr9 14944476 14944939 + 3 NA Intergenic L1ME4c|LINE|L1 -33712 NR_163238 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 562-175 chr5 46295903 46296177 + 3 NA Intergenic ALR/Alpha|Satellite|centr -599660 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 744-28 chr2 29987607 29987983 + 3 NA Intergenic Intergenic -66209 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 765-12 chr11 112308355 112308876 + 3 NA intron (NR_126004, intron 2 of 3) intron (NR_126004, intron 2 of 3) 37866 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 436-71 chr12 113658877 113659150 + 3 NA Intergenic Intergenic 114670 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 517-76 chr14 38378849 38379032 + 3 NA Intergenic L2a|LINE|L2 -122847 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 559-24 chr11 50643625 50643849 + 3 NA Intergenic ALR/Alpha|Satellite|centr 234590 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 288-326 chr5 42065786 42065990 + 3 NA Intergenic L1ME4a|LINE|L1 109457 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 598-2 chr1 12046095 12046482 + 3 NA Intergenic AluSc8|SINE|Alu -17015 NM_001243 943 Hs.1314 NM_001243 ENSG00000120949 TNFRSF8 CD30|D1S166E|Ki-1 TNF receptor superfamily member 8 protein-coding 404-331 chr8 127377221 127377458 + 3 NA intron (NR_117099, intron 3 of 3) MLT1C|LTR|ERVL-MaLR -23060 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 493-181 chr20 48113535 48113705 + 3 NA Intergenic Intergenic -123503 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 512-39 chr10 66012155 66012370 + 3 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 440837 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 447-240 chr6 158745740 158745963 + 3 NA intron (NM_001242394, intron 12 of 17) L1M5|LINE|L1 18902 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 379-116 chr17 10493176 10493324 + 3 NA intron (NM_005963, intron 39 of 39) MIR3|SINE|MIR -23691 NM_017533 4622 Hs.711141 NM_017533 ENSG00000264424 MYH4 MYH2B|MyHC-2B|MyHC-IIb myosin heavy chain 4 protein-coding 663-89 chr6 23249411 23249823 + 3 NA Intergenic L1ME1|LINE|L1 -531693 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 291-254 chr20 8554761 8554870 + 3 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) -276370 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 747-17 chr14 26012915 26013355 + 3 NA Intergenic L1MA3|LINE|L1 540295 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 418-8 chr1 99630232 99630552 + 3 NA intron (NR_031666, intron 1 of 4) L2a|LINE|L2 -15721 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 499-157 chr22 33639226 33639519 + 3 NA intron (NM_133642, intron 3 of 14) MLT1G|LTR|ERVL-MaLR 65548 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 418-35 chr10 111768732 111768982 + 3 NA Intergenic Intergenic 414908 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 602-38 chr15 46732495 46732858 + 3 NA Intergenic Intergenic -451413 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 874-29 chr8 25817219 25817850 + 3 NA Intergenic Intergenic 227879 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 564-212 chr9 19871463 19871796 + 3 NA Intergenic Intergenic -84610 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 916-3 chr10 69560478 69561118 + 3 NA Intergenic L1MC5|LINE|L1 12624 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 446-289 chr7 124294309 124294513 + 3 NA Intergenic Intergenic 57685 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 610-29 chr11 54899691 54900045 + 3 NA Intergenic ALR/Alpha|Satellite|centr 193036 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 496-28 chr10 11728227 11728526 + 3 NA Intergenic Intergenic -14006 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 727-19 chr12 25618688 25619204 + 3 NA intron (NM_001352232, intron 1 of 10) intron (NM_001352232, intron 1 of 10) 29632 NM_001145727 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 227-210 chr21 20239185 20239270 + 3 NA Intergenic L1MA5|LINE|L1 19458 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 345-253 chr2 57201255 57201411 + 3 NA Intergenic Intergenic -706318 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 621-46 chr17 14742761 14743128 + 3 NA Intergenic L1M6|LINE|L1 -271861 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 550-23 chr10 24930301 24930633 + 3 NA intron (NM_020200, intron 3 of 8) intron (NM_020200, intron 3 of 8) 22139 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 829-15 chr14 49331836 49332421 + 3 NA Intergenic L1PA16|LINE|L1 254252 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 458-11 chr1 217324851 217325061 + 3 NA Intergenic Intergenic -187254 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 418-282 chr8 63463161 63463443 + 3 NA Intergenic Intergenic -2547 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 182-35 chr12 6129748 6129861 + 3 NA Intergenic L1ME3Cz|LINE|L1 -5129 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 424-273 chr8 61452736 61452903 + 3 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 164849 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 515-104 chr2 21924676 21924945 + 3 NA Intergenic L1MB5|LINE|L1 -214158 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 680-66 chr2 149651873 149652312 + 3 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -64317 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 737-53 chr3 2672469 2672834 + 3 NA intron (NM_175607, intron 4 of 24) L1PA5|LINE|L1 -219564 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 295-377 chr5 43950716 43950882 + 3 NA Intergenic Intergenic -347569 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 268-50 chr10 62704785 62704938 + 3 NA Intergenic Intergenic -99859 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 542-220 chr8 79496973 79497304 + 3 NA Intergenic L1PB1|LINE|L1 -113979 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 2090 chr12 34459544 34460776 + 3 NA Intergenic ALR/Alpha|Satellite|centr 437664 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 441-46 chr11 96627869 96628164 + 3 NA Intergenic Intergenic 119591 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 651-52 chr18 10753235 10753705 + 3 NA intron (NM_022068, intron 25 of 51) intron (NM_022068, intron 25 of 51) 6179 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 648-141 chr8 25623852 25624204 + 3 NA Intergenic MIR|SINE|MIR 164795 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 639-12 chr10 33492349 33492782 + 3 NA Intergenic Intergenic -157660 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 615-11 chr10 87971777 87972230 + 3 NA TTS (NM_001304718) TTS (NM_001304718) 108378 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 311-336 chr3 41203623 41203821 + 3 NA intron (NM_001904, intron 1 of 14) intron (NM_001904, intron 1 of 14) 4217 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 549-34 chr11 30395171 30395471 + 3 NA intron (NM_001145399, intron 6 of 6) MIRb|SINE|MIR 72217 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 571-139 chr5 124245006 124245303 + 3 NA intron (NR_125774, intron 4 of 5) L1PB3|LINE|L1 193366 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 393-230 chr3 160988344 160988592 + 3 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 116264 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 528-154 chr3 35908020 35908285 + 3 NA Intergenic Intergenic 163676 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 592-6 chr1 158441704 158442002 + 3 NA Intergenic L2c|LINE|L2 -20987 NM_001004476 391107 Hs.626815 NM_001004476 ENSG00000180708 OR10K2 OR1-4 olfactory receptor family 10 subfamily K member 2 protein-coding 469-190 chr3 190164914 190165099 + 3 NA Intergenic L1M1|LINE|L1 -42569 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 449-34 chr10 81976994 81977161 + 3 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 99390 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 339-502 chr6 121834466 121834710 + 3 NA Intergenic LTR29|LTR|ERV1 398942 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 627-69 chr3 24500266 24500575 + 3 NA TTS (NR_046244) TTS (NR_046244) -4712 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 837-39 chr7 45614543 45615014 + 3 NA intron (NM_001281768, intron 4 of 9) L1M4c|LINE|L1 40410 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 645-59 chr2 146196955 146197281 + 3 NA Intergenic Intergenic -389939 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 496-57 chr12 44474657 44474895 + 3 NA Intergenic L1M1|LINE|L1 400885 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 858-9 chr11 80860895 80861456 + 3 NA Intergenic Intergenic -98372 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 783-30 chr16 65384426 65384813 + 3 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 191681 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 465-207 chr4 95780061 95780234 + 3 NA Intergenic L1ME3A|LINE|L1 -59946 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 797-55 chr7 103839354 103839810 + 3 NA intron (NM_005045, intron 2 of 64) L2a|LINE|L2 149934 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 351-245 chr2 171623641 171623801 + 3 NA Intergenic MER34C|LTR|ERV1 -63748 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 454-166 chr2 120191403 120191671 + 3 NA Intergenic L1M4c|LINE|L1 31863 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 408-79 chr12 33765486 33765727 + 3 NA Intergenic Intergenic -256890 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 416-17 chr1 182089927 182090198 + 3 NA Intergenic Intergenic -28350 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 961-14 chr4 159632662 159633240 + 3 NA Intergenic MER67C|LTR|ERV1 144833 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 330-197 chr16 83201065 83201192 + 3 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -210830 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 726-67 chr6 37851720 37852123 + 3 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 32194 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 347-556 chr9 96810000 96810230 + 3 NA Intergenic L1M4c|LINE|L1 -31986 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 739-25 chr16 72254176 72254484 + 3 NA Intergenic MARNA|DNA|TcMar-Mariner -81880 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 465-16 chr1 241487428 241487683 + 3 NA Intergenic Intergenic 32230 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 626-113 chr5 45970081 45970447 + 3 NA Intergenic ALR/Alpha|Satellite|centr -273884 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 335-262 chr2 126641000 126641255 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -14808 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 258-169 chr18 29529832 29529929 + 3 NA Intergenic Intergenic -769030 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 316-464 chr5 145796690 145796863 + 3 NA intron (NM_205846, intron 4 of 6) intron (NM_205846, intron 4 of 6) 38566 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 659-39 chr17 42645231 42645541 + 3 NA Intergenic LTR54B|LTR|ERV1 -13898 NM_001320509 27175 Hs.279669 NM_016437 ENSG00000037042 TUBG2 - tubulin gamma 2 protein-coding 483-289 chr9 122615835 122616022 + 3 NA TTS (NM_012364) TTS (NM_012364) 1190 NM_012364 158131 Hs.684864 NM_012364 ENSG00000165202 OR1Q1 HSTPCR106|OR1Q2|OR1Q3|OR9-25|OR9-A|OST226|OST226OR9-A|TPCR106 olfactory receptor family 1 subfamily Q member 1 protein-coding 570-37 chr11 30870527 30870857 + 3 NA intron (NM_001367979, intron 38 of 38) intron (NM_001367979, intron 38 of 38) 121994 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 404-223 chr3 191890221 191890417 + 3 NA Intergenic Intergenic -348311 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 1248-2 chr12 34592056 34592737 + 3 NA Intergenic ALR/Alpha|Satellite|centr 569900 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 567-212 chrX 95559539 95559949 + 3 NA Intergenic MER66-int|LTR|ERV1 -496518 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 473-54 chr12 15401597 15401891 + 3 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 79236 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 522-242 chr7 126805505 126805810 + 3 NA intron (NM_001371085, intron 6 of 10) MER89-int|LTR|ERV1 252527 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 271-136 chr14 61877602 61877698 + 3 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) -50045 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 588-85 chr20 46630787 46631181 + 3 NA intron (NM_001193340, intron 2 of 12) MIRb|SINE|MIR 20475 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 507-56 chr11 81404967 81405145 + 3 NA Intergenic L1MEg|LINE|L1 485780 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 527-231 chr6 129558404 129558648 + 3 NA Intergenic Intergenic 151651 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 649-28 chr15 61615265 61615572 + 3 NA Intergenic L1MB1|LINE|L1 -114500 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 345-444 chr5 146689930 146690086 + 3 NA intron (NM_181678, intron 6 of 10) intron (NM_181678, intron 6 of 10) -173895 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 578-183 chr8 125906453 125906720 + 3 NA Intergenic Intergenic 44611 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 389-4 chr1 51156957 51157154 + 3 NA Intergenic L1MA9|LINE|L1 54827 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 771-65 chr4 187205678 187206130 + 3 NA intron (NR_147159, intron 1 of 2) L1M5|LINE|L1 3918 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 354-444 chr7 112027541 112027708 + 3 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 178775 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 533-10 chr10 13013225 13013540 + 3 NA intron (NM_001282658, intron 5 of 6) L1MC4|LINE|L1 -11669 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 254-145 chr16 82827085 82827259 + 3 NA intron (NR_110938, intron 2 of 2) intron (NR_110938, intron 2 of 2) 53853 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 508-11 chr1 117897259 117897476 + 3 NA intron (NM_001135589, intron 7 of 12) intron (NM_001135589, intron 7 of 12) 32254 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 431-267 chr7 46699294 46699492 + 3 NA Intergenic L1MC2|LINE|L1 -2271 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 640-128 chr7 132378278 132378541 + 3 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 117548 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 490-113 chr18 6555379 6555686 + 3 NA intron (NR_120518, intron 2 of 5) MER112|DNA|hAT-Charlie 44116 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 753-20 chr14 43171246 43171656 + 3 NA Intergenic L1MA4|LINE|L1 1335832 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 492-162 chr21 30962214 30962408 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 76165 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 541-42 chr12 29263934 29264224 + 3 NA intron (NM_001271784, intron 1 of 10) L1MA3|LINE|L1 40413 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 407-227 chr4 96875654 96875819 + 3 NA Intergenic L2c|LINE|L2 -491190 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 372-420 chr5 165104640 165104857 + 3 NA Intergenic L1ME3Cz|LINE|L1 634469 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 365-394 chr8 46392876 46393025 + 3 NA Intergenic ALR/Alpha|Satellite|centr 224693 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 259-389 chr8 76547540 76547659 + 3 NA Intergenic L2a|LINE|L2 -133648 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 520-299 chr8 109363300 109363604 + 3 NA intron (NM_177531, intron 1 of 77) L3b|LINE|CR1 991 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 492-136 chr2 125598613 125598862 + 3 NA Intergenic L1PB4|LINE|L1 519248 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 441-4 chr1 60189398 60189573 + 3 NA Intergenic L1MC1|LINE|L1 -115715 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 472-345 chr9 96251918 96252169 + 3 NA intron (NM_000197, intron 4 of 10) intron (NM_000197, intron 4 of 10) 5580 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 553-54 chr13 75178358 75178583 + 3 NA Intergenic Intergenic 61911 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 495-177 chr4 60566981 60567257 + 3 NA Intergenic L1MA1|LINE|L1 -355500 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 632-97 chr5 72372731 72373171 + 3 NA Intergenic Intergenic 52578 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 563-76 chr18 53467008 53467339 + 3 NA intron (NM_005215, intron 24 of 28) (TA)n|Simple_repeat|Simple_repeat -101274 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 434-202 chr4 15912026 15912281 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 26587 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 152-59 chr20 53415808 53415894 + 3 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -136919 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 484-190 chr4 82284198 82284458 + 3 NA Intergenic L2c|LINE|L2 89663 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 960-3 chr10 108692555 108693063 + 3 NA Intergenic L1M4c|LINE|L1 -623516 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 498-242 chr6 165275585 165275869 + 3 NA Intergenic Intergenic 33878 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 906-13 chr12 13357981 13358606 + 3 NA Intergenic HAL1M8|LINE|L1 18452 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 855-4 chr10 41720665 41721199 + 3 NA Intergenic ALR/Alpha|Satellite|centr 647113 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 580-33 chr11 130966135 130966507 + 3 NA Intergenic L1PA16|LINE|L1 -49834 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 302-287 chr3 82558439 82558608 + 3 NA Intergenic Intergenic 572381 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 429-60 chr11 109426051 109426232 + 3 NA 3' UTR (NM_207645, exon 2 of 2) 3' UTR (NM_207645, exon 2 of 2) 3951 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 496-163 chr20 46589413 46589701 + 3 NA intron (NM_001193340, intron 7 of 12) L1ME4b|LINE|L1 -38903 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 518-160 chr20 25723632 25723911 + 3 NA Intergenic L1PB4|LINE|L1 -26918 NM_015655 26152 Hs.61881 NM_015655 ENSG00000130684 ZNF337 - zinc finger protein 337 protein-coding 611-154 chr9 32775453 32775902 + 3 NA Intergenic L1M4c|LINE|L1 -7863 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 536-240 chr8 126394488 126394775 + 3 NA Intergenic Intergenic 69136 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 360-477 chr8 125981417 125981659 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -30341 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 722-81 chr8 142903308 142903744 + 3 NA Intergenic MLT2D|LTR|ERVL 14317 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 546-219 chr7 49100676 49100988 + 3 NA Intergenic L1ME2|LINE|L1 176285 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 562-63 chr15 38914688 38914901 + 3 NA Intergenic Charlie29a|DNA|hAT-Charlie 218196 NR_160786 422-21 chr1 235029149 235029334 + 3 NA Intergenic Intergenic 40577 NR_027454 731656 Hs.702477 NR_027454 LINC01348 - long intergenic non-protein coding RNA 1348 ncRNA 489-38 chr10 130163278 130163642 + 3 NA intron (NM_006541, intron 4 of 10) intron (NM_006541, intron 4 of 10) 27051 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 499-284 chr9 81093650 81093860 + 3 NA Intergenic Intergenic 595780 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 292-21 chr1 107166118 107166304 + 3 NA intron (NM_001113226, intron 1 of 6) L2c|LINE|L2 18142 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 564-142 chr4 63160727 63161036 + 3 NA Intergenic Intergenic -999116 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 557-79 chr18 60166303 60166674 + 3 NA Intergenic Intergenic 206287 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 349-275 chr2 132545483 132545657 + 3 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 111859 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 538-99 chr19 30546114 30546363 + 3 NA intron (NM_014717, intron 3 of 4) intron (NM_014717, intron 3 of 4) 173854 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 1394 chr18 5246543 5247346 + 3 NA TTS (NR_015389) TTS (NR_015389) 8844 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 1066-8 chr14 82074943 82075611 + 3 NA Intergenic MIRc|SINE|MIR -332139 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 422-69 chr13 79233140 79233332 + 3 NA Intergenic Intergenic 172985 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 899-9 chr14 79643654 79644113 + 3 NA intron (NR_073547, intron 15 of 20) L2c|LINE|L2 364503 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 373-32 chr1 192268144 192268398 + 3 NA Intergenic AluJb|SINE|Alu -48721 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 472-246 chr5 51941707 51941888 + 3 NA Intergenic L1MB7|LINE|L1 -66234 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 657-16 chr10 89434783 89435062 + 3 NA intron (NM_213606, intron 7 of 7) MER5A|DNA|hAT-Charlie 20354 NM_012420 24138 Hs.252839 NM_012420 ENSG00000152778 IFIT5 ISG58|P58|RI58 interferon induced protein with tetratricopeptide repeats 5 protein-coding 221-147 chr2 121821128 121821268 + 3 NA Intergenic Intergenic 65547 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 684-76 chr3 109466853 109467200 + 3 NA intron (NR_109841, intron 3 of 4) L1PA17|LINE|L1 57036 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 636-2 chr1 58319266 58319585 + 3 NA Intergenic MLT1O|LTR|ERVL-MaLR -68878 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 953-33 chrX 113579796 113580233 + 3 NA Intergenic L1M2|LINE|L1 358204 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 469-91 chr15 56821355 56821613 + 3 NA Intergenic Intergenic -87398 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 379-318 chr7 71788191 71788400 + 3 NA intron (NM_001363460, intron 5 of 5) intron (NM_001363460, intron 5 of 5) -480525 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 695-55 chr2 239175702 239176135 + 3 NA intron (NM_006037, intron 5 of 26) intron (NM_006037, intron 5 of 26) 19539 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 460-210 chr3 179874023 179874192 + 3 NA intron (NR_146167, intron 6 of 13) intron (NR_146167, intron 6 of 13) -24087 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 410-112 chr18 10781452 10781625 + 3 NA intron (NM_022068, intron 17 of 51) (ATTATAT)n|Simple_repeat|Simple_repeat -21889 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 856-34 chr4 106394101 106394714 + 3 NA Intergenic Intergenic -26972 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 711-9 chr10 115996178 115996660 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR 198370 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 434-17 chr1 147448160 147448457 + 3 NA intron (NR_038423, intron 3 of 3) Chap1_Mam|DNA|hAT-Charlie 69567 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 633-37 chr14 22275432 22275691 + 3 NA Intergenic L1PB4|LINE|L1 157192 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 653-130 chr9 73310967 73311279 + 3 NA Intergenic L1P2|LINE|L1 159258 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 610-137 chr5 41958710 41959071 + 3 NA Intergenic L1MA8|LINE|L1 33609 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 499-210 chr5 126019728 126019920 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -159753 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 508-163 chr4 37146819 37146989 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 95087 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 502-274 chr8 125513856 125514237 + 3 NA Intergenic MIR|SINE|MIR 81837 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 737-83 chr8 69669927 69670235 + 3 NA 3' UTR (NM_001146008, exon 8 of 8) 3' UTR (NM_001146008, exon 8 of 8) 77181 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 382-226 chr2 216958678 216958889 + 3 NA Intergenic Intergenic 88011 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 457-274 chr9 84377959 84378216 + 3 NA Intergenic L1MC1|LINE|L1 -9360 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 379-380 chr9 90533841 90533999 + 3 NA intron (NR_034157, intron 1 of 5) L1MDa|LINE|L1 48826 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 438-51 chr11 25869414 25869644 + 3 NA Intergenic Intergenic -319594 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 455-136 chr2 186152444 186152721 + 3 NA Intergenic L1M5|LINE|L1 -66265 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 695-33 chr14 66961465 66961872 + 3 NA intron (NM_020806, intron 8 of 22) L1M5|LINE|L1 -227772 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 686-73 chr6 162908129 162908604 + 3 NA intron (NM_001080379, intron 2 of 4) MLT1K|LTR|ERVL-MaLR 145795 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 342-378 chr5 5482117 5482354 + 3 NA intron (NM_015325, intron 17 of 18) intron (NM_015325, intron 17 of 18) 59558 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 392-40 chr11 58439535 58439742 + 3 NA exon (NM_001004733, exon 1 of 1) exon (NM_001004733, exon 1 of 1) 535 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 455-38 chr10 108941836 108942030 + 3 NA Intergenic Intergenic -872640 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 307-330 chr4 19852523 19852655 + 3 NA Intergenic L2|LINE|L2 -399316 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 283-303 chr3 163394602 163394736 + 3 NA Intergenic L1M2|LINE|L1 -91368 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 329-223 chr17 77728294 77728420 + 3 NA intron (NR_104134, intron 1 of 1) intron (NR_104134, intron 1 of 1) 202 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 496-169 chr3 7931506 7931742 + 3 NA Intergenic L2a|LINE|L2 84683 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 541-140 chr20 41946137 41946325 + 3 NA Intergenic AluJr|SINE|Alu -327854 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 391-34 chr10 41757638 41757862 + 3 NA Intergenic ALR/Alpha|Satellite|centr 610295 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 381-371 chr7 157504521 157504733 + 3 NA Intergenic L1MEf|LINE|L1 38396 NR_110157 101927914 Hs.623826 NR_110157 ENSG00000234210 LOC101927914 - uncharacterized LOC101927914 ncRNA 360-205 chr2 16982970 16983149 + 3 NA Intergenic Intergenic -317225 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 479-164 chr4 66013938 66014155 + 3 NA Intergenic L1PA8A|LINE|L1 -262778 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 593-122 chr6 92239299 92239523 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -548983 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 268-437 chr9 77518708 77518867 + 3 NA intron (NR_121184, intron 4 of 4) intron (NR_121184, intron 4 of 4) 71138 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 481-295 chr8 89872421 89872641 + 3 NA Intergenic Intergenic -29337 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 850-18 chr2 66421470 66422036 + 3 NA Intergenic Intergenic 11717 NR_046438 730198 Hs.526753 NR_046438 MEIS1-AS3 - MEIS1 antisense RNA 3 ncRNA 364-347 chr5 61617955 61618134 + 3 NA Intergenic Intergenic -19716 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 541-232 chr8 76149374 76149610 + 3 NA Intergenic Intergenic -257162 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 792-39 chr3 41125104 41125510 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -74198 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 248-269 chr4 29713100 29713229 + 3 NA Intergenic Intergenic 498872 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 556-4 chr1 80139945 80140145 + 3 NA Intergenic Intergenic -395710 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 243-475 chr9 86023648 86023789 + 3 NA 3' UTR (NM_001321882, exon 23 of 23) 3' UTR (NM_001321882, exon 23 of 23) 75840 NM_016548 51280 Hs.494337 NM_016548 ENSG00000135052 GOLM1 C9orf155|GOLPH2|GP73|HEL46|PSEC0257|bA379P1.3 golgi membrane protein 1 protein-coding 452-192 chr4 99235942 99236133 + 3 NA intron (NR_037884, intron 4 of 9) L1ME4a|LINE|L1 -16791 NM_001102470 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 732-56 chr22 38335556 38335933 + 3 NA intron (NM_001289912, intron 5 of 14) AluSx|SINE|Alu -17660 NM_001894 1454 Hs.474833 NM_001894 ENSG00000213923 CSNK1E CKIe|CKIepsilon|HCKIE casein kinase 1 epsilon protein-coding 613-68 chr2 214657627 214658050 + 3 NA Intergenic L1PA13|LINE|L1 147656 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 388-64 chr11 59617449 59617639 + 3 NA Intergenic Intergenic -1770 NM_002556 5007 Hs.597091 NM_002556 ENSG00000110048 OSBP OSBP1 oxysterol binding protein protein-coding 318-21 chr1 98455776 98455942 + 3 NA Intergenic Intergenic -205862 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 620-125 chr6 151578793 151579116 + 3 NA intron (NM_025059, intron 6 of 10) intron (NM_025059, intron 6 of 10) 84937 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 434-230 chr5 99299964 99300136 + 3 NA Intergenic L1MA7|LINE|L1 -233940 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 430-141 chr2 39955406 39955607 + 3 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 37872 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 493-199 chr3 69875370 69875663 + 3 NA intron (NM_198177, intron 1 of 9) intron (NM_198177, intron 1 of 9) 9292 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 788-9 chr11 96484111 96484477 + 3 NA intron (NR_047481, intron 1 of 4) MER74A|LTR|ERVL 22583 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 492-58 chr12 25898943 25899270 + 3 NA Intergenic Intergenic -25027 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 381-132 chr16 83578054 83578248 + 3 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 69805 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 456-98 chr14 86938253 86938525 + 3 NA Intergenic Intergenic 32611 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 463-116 chr18 52502175 52502471 + 3 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 162126 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 453-89 chr17 60918891 60919147 + 3 NA intron (NM_001330413, intron 12 of 25) L1M2|LINE|L1 241168 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 543-175 chr4 24455556 24455858 + 3 NA intron (NM_001330752, intron 1 of 13) MSTD|LTR|ERVL-MaLR 17198 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 551-94 chr2 114369635 114369902 + 3 NA Intergenic Intergenic -72873 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 538-131 chr2 221058828 221059202 + 3 NA Intergenic L1PB4|LINE|L1 513289 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 518-242 chr5 129191614 129191801 + 3 NA Intergenic L1MA3|LINE|L1 94019 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 347-152 chr15 63637632 63637774 + 3 NA intron (NM_003922, intron 63 of 77) intron (NM_003922, intron 63 of 77) -36876 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 710-59 chr3 5621906 5622356 + 3 NA Intergenic L1MC3|LINE|L1 -371876 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 285-380 chr7 16331787 16331935 + 3 NA intron (NM_001101417, intron 2 of 8) L1MCa|LINE|L1 89677 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 732-76 chr5 101171662 101172032 + 3 NA Intergenic L1PREC2|LINE|L1 -268565 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 619-71 chr2 169410626 169411003 + 3 NA Intergenic MER65D|LTR|ERV1 -48280 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 778-51 chr4 103302211 103302664 + 3 NA Intergenic AluSc|SINE|Alu -104094 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 356-381 chr5 11878419 11878690 + 3 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 25892 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 547-183 chr5 45814749 45814974 + 3 NA Intergenic Intergenic -118481 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 393-393 chrX 63452523 63452709 + 3 NA intron (NR_152612, intron 1 of 2) L1PA14|LINE|L1 -101284 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 424-288 chr9 31665919 31666076 + 3 NA Intergenic Intergenic -284507 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 839-11 chr12 133066940 133067353 + 3 NA Intergenic Intergenic -13057 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 362-19 chr1 95513728 95513895 + 3 NA intron (NR_110621, intron 2 of 2) intron (NR_110621, intron 2 of 2) 3695 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 684-46 chr18 2223569 2223945 + 3 NA Intergenic Intergenic 347748 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 505-104 chr16 5702163 5702502 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 69865 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 808-45 chr5 137122602 137123066 + 3 NA intron (NM_004598, intron 4 of 10) intron (NM_004598, intron 4 of 10) -5363 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 1169-7 chr4 30347389 30348214 + 3 NA Intergenic Intergenic -372568 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 484-14 chr1 112349241 112349505 + 3 NA Intergenic L1MEd|LINE|L1 -46841 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 476-147 chr2 133452937 133453140 + 3 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 115425 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 432-37 chr10 105325686 105325943 + 3 NA Intergenic Intergenic 494519 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 674-107 chr9 8172430 8172846 + 3 NA Intergenic AluYj4|SINE|Alu -372860 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 573-178 chr7 17429400 17429614 + 3 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 54590 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 503-310 chr9 132712819 132713009 + 3 NA Intergenic L1MB7|LINE|L1 42450 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 794-46 chr8 120651235 120651702 + 3 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -109785 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 616-72 chr2 4437363 4437672 + 3 NA Intergenic L1MEf|LINE|L1 218705 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 428-294 chr8 69404386 69404619 + 3 NA Intergenic L1MC5|LINE|L1 43742 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 658-124 chr8 107410480 107410837 + 3 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -74143 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 562-73 chr16 50974558 50974894 + 3 NA intron (NR_039672, intron 2 of 6) LTR16E2|LTR|ERVL -43032 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 554-112 chr2 46517318 46517693 + 3 NA intron (NM_001371283, intron 3 of 3) L1MB1|LINE|L1 -24985 NM_012249 23433 Hs.709193 NM_012249 ENSG00000119729 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 538-140 chr21 14550661 14550848 + 3 NA intron (NM_001256370, intron 2 of 8) MamRep605|LTR?|LTR? -4394 NM_001286523 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 360-228 chr2 122379478 122379684 + 3 NA Intergenic Intergenic 623930 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 555-165 chr5 112285002 112285347 + 3 NA intron (NM_001347887, intron 2 of 23) intron (NM_001347887, intron 2 of 23) 56891 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 413-51 chr11 29933681 29933926 + 3 NA Intergenic L2|LINE|L2 48590 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 473-173 chr3 58989403 58989694 + 3 NA intron (NR_110820, intron 2 of 2) intron (NR_110820, intron 2 of 2) 60477 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 525-217 chr6 40693963 40694313 + 3 NA Intergenic MIR3|SINE|MIR -106774 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 524-204 chr5 102161677 102161988 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR 134452 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 314-144 chr13 50536941 50537068 + 3 NA Intergenic L1M2c|LINE|L1 -9555 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 667-69 chr3 110818685 110818963 + 3 NA Intergenic L1ME1|LINE|L1 251135 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 389-180 chr2 116316242 116316407 + 3 NA Intergenic Intergenic 972509 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 285-114 chr14 46404816 46404977 + 3 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -66463 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 531-159 chr3 106758052 106758297 + 3 NA Intergenic Intergenic 482464 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 526-149 chr2 228866105 228866407 + 3 NA Intergenic MER52D|LTR|ERV1 -254861 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 388-43 chr10 51509830 51509986 + 3 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 189687 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 364-315 chr4 121227485 121227635 + 3 NA promoter-TSS (NM_001244764) promoter-TSS (NM_001244764) -77 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 468-265 chr5 127865696 127865985 + 3 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 162451 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 372-399 chr5 61867501 61867745 + 3 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -131925 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 461-126 chr2 49391265 49391500 + 3 NA Intergenic L1PREC2|LINE|L1 -236855 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 235-367 chr8 118815231 118815316 + 3 NA Intergenic Intergenic 136612 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 687-39 chr15 80226841 80227324 + 3 NA intron (NM_001352888, intron 1 of 2) intron (NM_001352888, intron 1 of 2) 25131 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 452-65 chr13 47781662 47781966 + 3 NA Intergenic L1MA9|LINE|L1 150808 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 431-22 chr1 188602576 188602776 + 3 NA Intergenic Intergenic 1159048 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 480-37 chr10 123846936 123847171 + 3 NA intron (NM_198148, intron 3 of 13) HAL1|LINE|L1 44754 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 499-285 chr9 84639939 84640209 + 3 NA Intergenic Intergenic -28384 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 584-120 chr4 131517701 131518037 + 3 NA Intergenic Intergenic -246969 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 495-243 chr8 16080216 16080513 + 3 NA Intergenic Intergenic 105908 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 515-263 chr8 86177338 86177717 + 3 NA Intergenic L2c|LINE|L2 52854 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 273-419 chr7 26237881 26238042 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 36216 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 386-83 chr13 63407741 63407949 + 3 NA Intergenic Intergenic -79751 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 165-26 chr13 21772258 21772348 + 3 NA Intergenic Intergenic 101230 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 345-65 chr10 62129465 62129683 + 3 NA Intergenic L1MB7|LINE|L1 80217 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 490-84 chr14 36599978 36600202 + 3 NA Intergenic Intergenic -17476 NM_014360 26257 Hs.234763 NM_014360 ENSG00000136327 NKX2-8 NKX2.8|NKX2H|Nkx2-9 NK2 homeobox 8 protein-coding 422-126 chr18 39893159 39893334 + 3 NA Intergenic Intergenic 51537 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 398-136 chr17 51394770 51395001 + 3 NA Intergenic Intergenic -40542 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 357-296 chr3 196255520 196255789 + 3 NA intron (NM_005017, intron 4 of 9) AluSz6|SINE|Alu 32072 NM_001312673 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 759-49 chr3 36384208 36384736 + 3 NA intron (NM_001292049, intron 1 of 8) intron (NM_001292049, intron 1 of 8) 3985 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 513-198 chr4 29953889 29954139 + 3 NA Intergenic Intergenic 739722 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 329-387 chr3 163329246 163329472 + 3 NA Intergenic L1ME4c|LINE|L1 -26058 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 687-53 chr19 24343086 24343456 + 3 NA Intergenic ALR/Alpha|Satellite|centr -179824 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 384-416 chrX 152879124 152879398 + 3 NA Intergenic Intergenic -35181 NM_001178106 7739 Hs.16622 NM_007150 ENSG00000147394 ZNF185 SCELL zinc finger protein 185 with LIM domain protein-coding 515-254 chr7 79687748 79688003 + 3 NA Intergenic AluSx|SINE|Alu 233915 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 523 chr1 41950896 41951191 + 3 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -32121 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 474-95 chr15 79469096 79469303 + 3 NA 3' UTR (NM_015206, exon 4 of 4) 3' UTR (NM_015206, exon 4 of 4) 36683 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 566-74 chr18 57382995 57383230 + 3 NA Intergenic Intergenic 30555 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 573-162 chr6 40197775 40198067 + 3 NA Intergenic Intergenic 158085 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 653-42 chr14 73925704 73926060 + 3 NA intron (NM_001242924, intron 13 of 13) AluJb|SINE|Alu -24052 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 562-165 chr5 7735495 7735891 + 3 NA intron (NM_020546, intron 14 of 24) L1M4|LINE|L1 115440 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 504-21 chr10 13706150 13706419 + 3 NA intron (NM_001318336, intron 12 of 23) intron (NM_001318336, intron 12 of 23) 1283 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 504-33 chr10 129672158 129672385 + 3 NA intron (NM_002412, intron 2 of 4) L1ME3B|LINE|L1 171103 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 359-228 chr2 49642924 49643106 + 3 NA Intergenic Intergenic 331188 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 1118-18 chr3 161320468 161321100 + 3 NA Intergenic L1M1|LINE|L1 51299 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 501-193 chr4 71909974 71910288 + 3 NA Intergenic MIR3|SINE|MIR -104611 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 485-112 chr18 64057992 64058217 + 3 NA Intergenic Intergenic -45987 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 280-84 chr12 25045367 25045584 + 3 NA intron (NM_001321724, intron 17 of 17) L1M3d|LINE|L1 -6753 NM_001366542 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 856-50 chr8 129893428 129893808 + 3 NA intron (NM_001353307, intron 4 of 13) intron (NM_001353307, intron 4 of 13) 46193 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 564-140 chr4 57904370 57904728 + 3 NA Intergenic Intergenic 478677 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 805-20 chr19 52410242 52410667 + 3 NA intron (NM_032423, intron 6 of 6) LTR3|LTR|ERVK 12605 NM_032423 84436 Hs.662043 NM_032423 ENSG00000167555 ZNF528 - zinc finger protein 528 protein-coding 430-165 chr2 172220576 172220722 + 3 NA Intergenic Intergenic 117643 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 283-262 chr20 39173889 39174094 + 3 NA Intergenic MER96B|DNA|hAT-Tip100 50757 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 696-49 chr17 40763382 40763819 + 3 NA Intergenic L1MEd|LINE|L1 -8269 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 554-8 chr1 73925131 73925326 + 3 NA Intergenic Intergenic 250549 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 872-36 chr4 54658173 54658771 + 3 NA intron (NM_000222, intron 1 of 20) CpG 544 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 515-223 chr5 162369235 162369492 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 301721 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 472-321 chr8 108930190 108930429 + 3 NA Intergenic Intergenic -142715 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 277-324 chr5 61894862 61895023 + 3 NA Intergenic Intergenic -159244 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 351-65 chr11 36219176 36219403 + 3 NA intron (NM_001304264, intron 4 of 5) intron (NM_001304264, intron 4 of 5) 70135 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 489-151 chr2 185515291 185515509 + 3 NA Intergenic Intergenic 223319 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 181-5 chr1 91928678 91928773 + 3 NA Intergenic Intergenic -20646 NM_207189 676 Hs.482520 NM_001726 ENSG00000137948 BRDT BRD6|CT9|SPGF21 bromodomain testis associated protein-coding 341-111 chr12 27835572 27835788 + 3 NA Intergenic Intergenic 55447 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 565-23 chr11 41772323 41772545 + 3 NA intron (NR_120584, intron 2 of 5) L1ME1|LINE|L1 57866 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 1072-2 chr10 65387490 65388090 + 3 NA Intergenic Intergenic -183635 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 484-115 chr2 20862144 20862370 + 3 NA Intergenic Intergenic -39127 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 603-36 chr12 114543428 114543648 + 3 NA Intergenic Intergenic -135096 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 504-150 chr20 42514634 42514906 + 3 NA intron (NM_133170, intron 7 of 31) L1ME3E|LINE|L1 -170713 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 341-174 chr15 92553044 92553228 + 3 NA Intergenic ERVL-int|LTR|ERVL 19127 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 879-5 chr12 59141256 59141607 + 3 NA Intergenic Intergenic -220893 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 428-301 chr8 90308819 90309046 + 3 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 87444 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 503-14 chr1 118559865 118560183 + 3 NA Intergenic Intergenic -374796 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 665-112 chr9 25294774 25295155 + 3 NA Intergenic Intergenic 383894 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 739-18 chr14 28841371 28841785 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -55791 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 1199-4 chr14 45774074 45774580 + 3 NA Intergenic L1M4c|LINE|L1 -58725 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 1178-12 chr8 139032612 139033528 + 3 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -119029 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 556-190 chr6 47338276 47338621 + 3 NA Intergenic MIRb|SINE|MIR -28543 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 738-66 chr7 118878677 118878935 + 3 NA Intergenic LTR64|LTR|ERV1 654102 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 596-25 chr10 51615089 51615453 + 3 NA intron (NM_001098512, intron 3 of 17) L1MA4A|LINE|L1 84324 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 587-99 chr3 3275554 3275922 + 3 NA Intergenic Intergenic -96021 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 482-292 chr9 18794918 18795131 + 3 NA intron (NM_001040272, intron 19 of 28) intron (NM_001040272, intron 19 of 28) 221718 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 433-199 chr4 43611358 43611522 + 3 NA Intergenic Intergenic -118897 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 541-52 chr12 104405662 104406011 + 3 NA Intergenic Intergenic -51112 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 674-88 chr6 62971120 62971480 + 3 NA Intergenic Intergenic 348677 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 412-297 chr7 3096992 3097208 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -53233 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 392-340 chr8 130404324 130404552 + 3 NA intron (NM_001362925, intron 1 of 29) L1M4|LINE|L1 39222 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 446-298 chr8 53767936 53768136 + 3 NA intron (NM_213620, intron 11 of 13) L1MB8|LINE|L1 75006 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 163-113 chr7 45313592 45313712 + 3 NA Intergenic L1MDa|LINE|L1 155861 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 535-54 chr12 65662555 65662895 + 3 NA Intergenic Intergenic -20353 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 563-45 chr13 54963772 54963973 + 3 NA Intergenic Intergenic -210582 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 484-135 chr2 121788715 121788996 + 3 NA Intergenic Tigger17a|DNA|TcMar-Tigger 33204 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 315-454 chr7 126469336 126469531 + 3 NA intron (NM_001371085, intron 9 of 10) THE1C|LTR|ERVL-MaLR 588751 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 357-280 chr3 108740766 108740917 + 3 NA Intergenic MamRep1527|LTR|LTR 16442 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 302-324 chr4 63617704 63617895 + 3 NA Intergenic Intergenic 791651 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 476-26 chr10 59253200 59253474 + 3 NA intron (NM_001347852, intron 11 of 12) intron (NM_001347852, intron 11 of 12) 75870 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 519-164 chr4 96625173 96625438 + 3 NA intron (NR_147149, intron 3 of 3) MIRc|SINE|MIR 314602 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 695-50 chr2 99509115 99509395 + 3 NA Intergenic Intergenic -19238 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 380-292 chr4 179365627 179365796 + 3 NA Intergenic Intergenic -1457775 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 832-33 chr4 85629425 85629825 + 3 NA intron (NM_001025616, intron 2 of 9) L1MA9|LINE|L1 -92843 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 321-605 chr9 106243880 106244050 + 3 NA Intergenic Intergenic -356963 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 606-74 chr2 5112105 5112389 + 3 NA Intergenic Intergenic -456025 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 323-380 chr4 126533390 126533540 + 3 NA Intergenic Intergenic 1026206 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 411-151 chr2 103356010 103356152 + 3 NA Intergenic MLT1E2-int|LTR|ERVL-MaLR -371652 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 715-95 chr9 119225053 119225329 + 3 NA intron (NM_014618, intron 5 of 7) L1MB5|LINE|L1 144244 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 454-242 chr4 114214599 114214823 + 3 NA Intergenic Intergenic -235064 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 505-12 chr1 117556151 117556501 + 3 NA Intergenic HAL1|LINE|L1 49444 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 385-283 chr4 133504899 133505132 + 3 NA Intergenic Intergenic 355721 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 320-598 chr9 119753140 119753276 + 3 NA Intergenic Intergenic -181852 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 554-195 chr7 85805525 85805786 + 3 NA Intergenic Intergenic 384533 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 614-104 chr5 113526990 113527243 + 3 NA intron (NM_001345975, intron 3 of 28) MIRb|SINE|MIR 13422 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 682-41 chr18 2147008 2147398 + 3 NA Intergenic Intergenic 424302 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 621-31 chr14 60717150 60717427 + 3 NA intron (NM_017420, intron 2 of 2) AluSq2|SINE|Alu 7063 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 703-94 chr8 91314654 91314973 + 3 NA intron (NM_134266, intron 4 of 18) intron (NM_134266, intron 4 of 18) 65494 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 359-214 chr19 58223387 58223680 + 3 NA Intergenic Intergenic -5148 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 597-87 chr22 35083492 35083720 + 3 NA intron (NM_001303508, intron 3 of 4) intron (NM_001303508, intron 3 of 4) 17448 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 522-148 chr2 188903783 188904104 + 3 NA Intergenic MIR|SINE|MIR -70430 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 762-29 chr17 34760641 34761023 + 3 NA Intergenic Intergenic 180083 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 312-523 chr8 101199875 101200009 + 3 NA intron (NM_001267709, intron 3 of 3) intron (NM_001267709, intron 3 of 3) 5731 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 670-39 chr15 27363772 27364127 + 3 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -202630 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 888-32 chr5 23973974 23974470 + 3 NA intron (NR_131245, intron 1 of 4) L1M4b|LINE|L1 22874 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 473-236 chr5 174546439 174546847 + 3 NA Intergenic MIR|SINE|MIR -177939 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 383-404 chr8 139083758 139083922 + 3 NA Intergenic Intergenic -169799 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 860-25 chr2 95268148 95268585 + 3 NA Intergenic Intergenic -6083 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 574-101 chr21 28379537 28379840 + 3 NA Intergenic Intergenic -151021 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 446-6 chr1 49105890 49106100 + 3 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -151416 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 470-78 chr14 73526853 73527149 + 3 NA intron (NM_203309, intron 1 of 16) L1M1|LINE|L1 -10142 NM_001037161 641371 Hs.446685 NM_001037161 ENSG00000184227 ACOT1 ACH2|CTE-1|LACH2 acyl-CoA thioesterase 1 protein-coding 393-178 chr2 172657512 172657668 + 3 NA Intergenic MER34|LTR|ERV1 -78255 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 545-154 chr4 29167143 29167389 + 3 NA Intergenic L1M2c|LINE|L1 -47026 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 406-6 chr1 57107503 57107678 + 3 NA intron (NM_001365793, intron 4 of 14) intron (NM_001365793, intron 4 of 14) -141450 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 316-443 chr5 86343006 86343187 + 3 NA Intergenic L1MEd|LINE|L1 60652 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 325-378 chr4 17138995 17139166 + 3 NA Intergenic LTR16C|LTR|ERVL 46977 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 386-70 chr12 15422753 15422963 + 3 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 100350 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 644-53 chr21 34255556 34255906 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 75054 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 810-34 chr3 103533923 103534203 + 3 NA Intergenic L2a|LINE|L2 -9947 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 907-26 chr8 64715658 64716073 + 3 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 82872 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 1075-15 chr8 72284182 72284737 + 3 NA Intergenic MER4D|LTR|ERV1 -32825 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 398-169 chr2 104016039 104016249 + 3 NA Intergenic L1ME3A|LINE|L1 392188 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 663-36 chr14 53695365 53695745 + 3 NA Intergenic Intergenic 252929 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 623-8 chr1 217041385 217041801 + 3 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 35399 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 954-21 chr19 37451856 37452434 + 3 NA intron (NM_152484, intron 2 of 5) L1M4c|LINE|L1 15299 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 268-267 chr4 7261527 7261701 + 3 NA intron (NM_020777, intron 1 of 26) intron (NM_020777, intron 1 of 26) -48836 NR_039961 100616471 NR_039961 ENSG00000264658 MIR4798 - microRNA 4798 ncRNA 740-80 chr9 88328405 88328937 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -59773 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 973-5 chr11 79620372 79620952 + 3 NA Intergenic Intergenic -179632 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 243-463 chr8 138027120 138027262 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 56354 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 345-330 chr21 35182039 35182247 + 3 NA Intergenic Intergenic -132845 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 922-34 chr7 51958120 51958538 + 3 NA Intergenic L1M1|LINE|L1 -565073 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 992-22 chr8 19520950 19521517 + 3 NA intron (NM_001354497, intron 1 of 7) L2|LINE|L2 81312 NM_001354499 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 568-200 chr8 114911413 114911653 + 3 NA Intergenic L1P4b|LINE|L1 756480 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 438-293 chr9 28746521 28746735 + 3 NA intron (NM_001354574, intron 2 of 5) MIR|SINE|MIR -27323 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 334-429 chr5 96890946 96891061 + 3 NA intron (NM_001329229, intron 4 of 17) intron (NM_001329229, intron 4 of 17) 15064 NM_022350 64167 Hs.482910 NM_022350 ENSG00000164308 ERAP2 L-RAP|LRAP endoplasmic reticulum aminopeptidase 2 protein-coding 443-99 chr14 97505882 97506112 + 3 NA intron (NR_110166, intron 1 of 4) HSMAR1|DNA|TcMar-Mariner 47181 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 442-37 chr10 121983611 121983802 + 3 NA Intergenic AluY|SINE|Alu -5457 NM_001291876 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 244-168 chr2 84820945 84821034 + 3 NA TTS (NM_001277053) TTS (NM_001277053) 60095 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 723-60 chr5 97593490 97593925 + 3 NA intron (NR_105028, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 89011 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 982-17 chr20 58051240 58051688 + 3 NA Intergenic L1MB7|LINE|L1 47560 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 517-85 chr15 81355942 81356210 + 3 NA intron (NM_001080532, intron 8 of 21) Charlie7a|DNA|hAT-Charlie 18137 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 539-218 chr9 96842991 96843295 + 3 NA intron (NM_001346995, intron 2 of 3) L1MD2|LINE|L1 11371 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 486-135 chr2 46305337 46305604 + 3 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 8063 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 537-241 chr7 120406771 120407057 + 3 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 133739 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 453-185 chr4 81953861 81954059 + 3 NA Intergenic MIRc|SINE|MIR 420031 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 817-48 chr7 41656387 41656717 + 3 NA Intergenic Intergenic -37367 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 232-386 chr8 126627337 126627442 + 3 NA Intergenic Intergenic -68911 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 312-484 chr7 46404455 46404639 + 3 NA Intergenic L1MA4|LINE|L1 292575 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 487-232 chr5 82161317 82161641 + 3 NA intron (NM_031482, intron 3 of 7) LTR86B2|LTR|ERVL 116875 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 198-170 chr3 110682006 110682088 + 3 NA Intergenic Intergenic 387912 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 448-17 chr1 177617828 177618069 + 3 NA Intergenic Intergenic -82576 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 534-53 chr11 114542086 114542297 + 3 NA intron (NM_152315, intron 2 of 5) L1M8|LINE|L1 17690 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 160-81 chr4 128989316 128989377 + 3 NA intron (NM_144643, intron 9 of 20) L1M1|LINE|L1 104193 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 432-176 chr3 78653945 78654134 + 3 NA intron (NM_002941, intron 18 of 30) intron (NM_002941, intron 18 of 30) 365420 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 381-363 chr7 83494314 83494563 + 3 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 146993 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 585-22 chr11 35058935 35059298 + 3 NA Intergenic L2a|LINE|L2 78916 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 787-53 chr8 82278426 82278927 + 3 NA Intergenic L1MA1|LINE|L1 -436390 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 346-42 chr10 26170697 26170846 + 3 NA intron (NM_017433, intron 29 of 34) intron (NM_017433, intron 29 of 34) -45536 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 428-148 chr2 226503963 226504141 + 3 NA Intergenic L1MA5|LINE|L1 154741 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 790-45 chr6 69360877 69361493 + 3 NA exon (NM_001704, exon 29 of 32) exon (NM_001704, exon 29 of 32) 435281 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 365-208 chr2 150495249 150495508 + 3 NA Intergenic Intergenic -7683 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 541-28 chr11 13905856 13906191 + 3 NA Intergenic Intergenic 18840 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 556-23 chr10 64056043 64056406 + 3 NA Intergenic Intergenic -534334 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 698-50 chr21 22711857 22712311 + 3 NA Intergenic Intergenic -367200 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 239-325 chr5 109095658 109095822 + 3 NA intron (NR_146155, intron 16 of 19) intron (NR_146155, intron 16 of 19) 171134 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 506-224 chr5 28427346 28427690 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -139853 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 909-32 chr9 138033762 138034300 + 3 NA intron (NM_001243812, intron 20 of 45) L1MC2|LINE|L1 11040 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 455-162 chr3 40960566 40960792 + 3 NA Intergenic L1MA9|LINE|L1 -238826 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 883-14 chr18 52186720 52187225 + 3 NA Intergenic Intergenic -153225 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 728-112 chrX 82348014 82348429 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 1146119 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 458-157 chr21 17966087 17966288 + 3 NA intron (NM_001204177, intron 1 of 4) intron (NM_001204177, intron 1 of 4) 48847 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 281-26 chr1 218497058 218497230 + 3 NA intron (NR_031644, intron 2 of 6) (ATGTAT)n|Simple_repeat|Simple_repeat -12951 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 499-2 chr1 33880115 33880442 + 3 NA intron (NR_038372, intron 5 of 7) intron (NR_038372, intron 5 of 7) 11322 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 457-22 chr1 239469010 239469187 + 3 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 82530 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 425-25 chr10 6266405 6266679 + 3 NA Intergenic L1MC4|LINE|L1 -60002 NR_040079 399715 NR_040079 ENSG00000215244 LINC02649 - long intergenic non-protein coding RNA 2649 ncRNA 669-95 chr6 6074470 6074938 + 3 NA Intergenic L1MA4|LINE|L1 -67099 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 1030-2 chr1 58592440 58592894 + 3 NA Intergenic (TGCC)n|Simple_repeat|Simple_repeat -15415 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor associated calcium signal transducer 2 protein-coding 1124-6 chr4 54924191 54924916 + 3 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 201042 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 479-197 chr5 62816872 62817166 + 3 NA Intergenic Intergenic 238200 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 594-32 chr11 125846781 125847025 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 13587 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 448-271 chr8 35622651 35622843 + 3 NA intron (NM_001322818, intron 4 of 16) intron (NM_001322818, intron 4 of 16) 78355 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 558-184 chr6 40115206 40115516 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -180899 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 340-228 chr19 51517551 51517708 + 3 NA TTS (NM_001245) TTS (NM_001245) 14041 NM_001177547 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 454-190 chr20 47562509 47562707 + 3 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 60721 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 433-24 chr10 54359147 54359303 + 3 NA intron (NM_001354411, intron 5 of 34) intron (NM_001354411, intron 5 of 34) -127005 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 485-213 chr4 150971392 150971699 + 3 NA intron (NM_001367550, intron 2 of 56) intron (NM_001367550, intron 2 of 56) 43722 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 957-34 chrX 95657030 95657668 + 3 NA Intergenic Intergenic -594123 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 463-27 chr1 193921563 193921802 + 3 NA Intergenic L1MCa|LINE|L1 616937 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 488-299 chrX 46501355 46501657 + 3 NA intron (NM_001190417, intron 5 of 5) intron (NM_001190417, intron 5 of 5) 43915 NM_001039891 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 696-19 chr11 54896120 54896523 + 3 NA Intergenic L1PA3|LINE|L1 189489 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 537-277 chr9 87107415 87107746 + 3 NA Intergenic Intergenic -22355 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 250-459 chr9 96760580 96760693 + 3 NA intron (NM_001314060, intron 4 of 4) intron (NM_001314060, intron 4 of 4) 17451 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 221-55 chr11 90609180 90609306 + 3 NA intron (NR_104190, intron 3 of 6) L2a|LINE|L2 -53386 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 1090-2 chr12 3589756 3590355 + 3 NA intron (NM_019854, intron 8 of 9) intron (NM_019854, intron 8 of 9) -97236 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 532-243 chr7 39881873 39882218 + 3 NA Intergenic MER4-int|LTR|ERV1 67374 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 509-240 chr7 129120656 129120892 + 3 NA Intergenic Intergenic -5497 NR_002144 407835 Hs.592273 NR_002144 LOC407835 - mitogen-activated protein kinase kinase 2 pseudogene pseudo 335-116 chr12 15469919 15470090 + 3 NA intron (NM_030667, intron 1 of 26) MIRb|SINE|MIR -76607 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 522-269 chr9 27257749 27257998 + 3 NA intron (NR_026679, intron 15 of 16) MIRc|SINE|MIR 24920 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 345-531 chr8 113462844 113462976 + 3 NA Intergenic Intergenic -25971 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 291-292 chr3 90611276 90611460 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1503747 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 566-8 chr10 11349630 11349908 + 3 NA Intergenic MER66-int|LTR|ERV1 -5095 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 396-149 chr2 14060802 14061028 + 3 NA Intergenic L1MB8|LINE|L1 340043 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 480-17 chr1 220864406 220864687 + 3 NA intron (NR_046901, intron 1 of 2) L1M4|LINE|L1 -14897 NM_021958 3142 Hs.74870 NM_021958 ENSG00000136630 HLX HB24|HLX1 H2.0 like homeobox protein-coding 786-39 chr22 34133048 34133496 + 3 NA Intergenic Intergenic -210384 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 262-33 chr1 239479281 239479458 + 3 NA intron (NM_001347716, intron 1 of 7) L1MEf|LINE|L1 92801 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 420-56 chr11 115369860 115370073 + 3 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -26790 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 241-39 chr10 61660445 61660595 + 3 NA Intergenic Intergenic -2409 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 305-329 chr22 47263854 47264031 + 3 NA Intergenic Intergenic -81629 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 672-79 chr4 52815597 52816008 + 3 NA TTS (NR_040106) TTS (NR_040106) 25808 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 545-168 chr4 178553014 178553448 + 3 NA Intergenic Intergenic -645295 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 673-40 chr16 60349684 60350036 + 3 NA Intergenic (TATTA)n|Simple_repeat|Simple_repeat 9933 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 514-112 chr16 31798813 31799108 + 3 NA Intergenic Intergenic 9893 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 492-76 chr13 59118444 59118670 + 3 NA Intergenic Intergenic -885440 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 601-53 chr17 16508425 16508685 + 3 NA Intergenic Intergenic -16362 NM_001113567 388341 Hs.25425 NM_207387 ENSG00000181350 LRRC75A C17orf76|FAM211A leucine rich repeat containing 75A protein-coding 501-261 chr8 87728176 87728503 + 3 NA Intergenic Intergenic 145676 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 957-16 chr20 18998330 18998812 + 3 NA Intergenic MER50|LTR|ERV1 -168368 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 546-258 chr9 118004604 118004973 + 3 NA Intergenic Intergenic 300385 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 538-29 chr10 80972235 80972599 + 3 NA Intergenic L1ME3A|LINE|L1 322620 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 602-84 chr3 1689314 1689530 + 3 NA Intergenic L1MCc|LINE|L1 -409381 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 556-176 chr5 85609641 85609941 + 3 NA Intergenic Intergenic -672653 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 667-80 chr4 105619732 105620184 + 3 NA intron (NM_001242729, intron 3 of 13) intron (NM_001242729, intron 3 of 13) 58367 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 573-161 chr6 12837571 12837860 + 3 NA intron (NM_001322308, intron 3 of 13) MIRb|SINE|MIR 119016 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 376-45 chr10 44344025 44344259 + 3 NA Intergenic Intergenic 40955 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 555-142 chr4 46878298 46878510 + 3 NA intron (NM_130902, intron 1 of 2) L1MA9|LINE|L1 30841 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 348-322 chr3 134415021 134415169 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -22732 NR_039951 100616281 NR_039951 ENSG00000284561 MIR4788 - microRNA 4788 ncRNA 312-31 chr10 17877578 17877819 + 3 NA intron (NM_002438, intron 17 of 29) intron (NM_002438, intron 17 of 29) 32591 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 436-303 chr8 84719850 84720110 + 3 NA intron (NM_001287244, intron 1 of 7) L1MA6|LINE|L1 14053 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 274-38 chr10 28187958 28188089 + 3 NA intron (NR_134518, intron 2 of 16) intron (NR_134518, intron 2 of 16) 94100 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 456-326 chr8 122340698 122341026 + 3 NA Intergenic Intergenic 227782 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1097 chr1 105978152 105978700 + 3 NA intron (NR_146609, intron 5 of 5) intron (NR_146609, intron 5 of 5) 49827 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 305-56 chr10 31371794 31371952 + 3 NA intron (NM_001368169, intron 1 of 1) intron (NM_001368169, intron 1 of 1) 27882 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 519-77 chr17 436295 436603 + 3 NA Intergenic L1M5|LINE|L1 9491 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 798-57 chr5 167397581 167397932 + 3 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -175903 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 771-70 chr5 65344384 65344691 + 3 NA intron (NR_135689, intron 7 of 25) L1ME4a|LINE|L1 137383 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 569-36 chr11 42046668 42046889 + 3 NA intron (NR_135065, intron 6 of 9) intron (NR_135065, intron 6 of 9) 38680 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 562-235 chrX 97621294 97621640 + 3 NA Intergenic L2c|LINE|L2 -56932 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 383-124 chr15 24038553 24038711 + 3 NA intron (NR_126392, intron 4 of 5) L1PA11|LINE|L1 63485 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 652-86 chr4 46720994 46721289 + 3 NA Intergenic Intergenic 188104 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 976-12 chr2 80268294 80268701 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 36255 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 480-53 chr12 21063510 21063747 + 3 NA intron (NM_001009562, intron 10 of 12) L2a|LINE|L2 47932 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 528-121 chr2 3865441 3865691 + 3 NA Intergenic Intergenic 108466 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 693-22 chr12 21798046 21798402 + 3 NA 3' UTR (NM_020297, exon 38 of 38) 3' UTR (NM_020297, exon 38 of 38) -23518 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 307-285 chr22 39766710 39766965 + 3 NA intron (NM_152512, intron 5 of 6) intron (NM_152512, intron 5 of 6) 126923 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 463-189 chr3 88993288 88993485 + 3 NA Intergenic Intergenic -114235 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 340-239 chr2 22745801 22746024 + 3 NA Intergenic Intergenic 209433 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 658-15 chr10 57025027 57025314 + 3 NA Intergenic L1MA2|LINE|L1 279389 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 409-178 chr20 46873320 46873486 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -21221 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 812-54 chr8 126032966 126033450 + 3 NA Intergenic MIRb|SINE|MIR -82011 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 444-246 chr7 111413393 111413604 + 3 NA intron (NM_032549, intron 3 of 5) L1MEc|LINE|L1 148793 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 512-93 chr16 14048327 14048593 + 3 NA Intergenic L2b|LINE|L2 -22602 NM_001365420 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 522-257 chr8 123624201 123624498 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR 29452 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 566-183 chr7 85969933 85970266 + 3 NA Intergenic L1ME3A|LINE|L1 548977 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 432-290 chr8 78072477 78072721 + 3 NA Intergenic Intergenic -443741 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 779-47 chr6 120326002 120326571 + 3 NA Intergenic L1MC|LINE|L1 311107 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 269-326 chr5 145335307 145335451 + 3 NA Intergenic L1M2|LINE|L1 499963 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 649-5 chr1 214959622 214959892 + 3 NA Intergenic Intergenic -45785 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 728-21 chr12 43118578 43118951 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -36551 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 558-137 chr3 103902914 103903212 + 3 NA Intergenic Intergenic -378947 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 562-156 chr4 32803239 32803570 + 3 NA Intergenic MER66-int|LTR|ERV1 452366 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 372-492 chr8 122976075 122976253 + 3 NA Intergenic MIRb|SINE|MIR 49608 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 685-100 chrX 84539022 84539378 + 3 NA Intergenic Intergenic -36747 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 423-93 chr16 10665050 10665278 + 3 NA intron (NM_144674, intron 5 of 6) intron (NM_144674, intron 5 of 6) 29766 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 392-142 chr2 38400680 38400895 + 3 NA Intergenic L1ME3A|LINE|L1 -22203 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 734-10 chr10 100117910 100118518 + 3 NA Intergenic Intergenic -36345 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 869-29 chr2 60097913 60098391 + 3 NA Intergenic Intergenic 284884 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 758-23 chr14 47961970 47962382 + 3 NA Intergenic Intergenic -167162 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 358-423 chr7 7734776 7734982 + 3 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -16272 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 414-120 chr17 54773252 54773443 + 3 NA Intergenic Intergenic -127344 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 514-6 chr1 66690271 66690465 + 3 NA intron (NM_001350218, intron 15 of 22) intron (NM_001350218, intron 15 of 22) 61928 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 830-30 chr3 14742005 14742532 + 3 NA intron (NM_001184957, intron 12 of 16) L2|LINE|L2 67127 NM_032137 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 404-287 chr7 18808996 18809261 + 3 NA intron (NM_058176, intron 16 of 22) L1MA9|LINE|L1 299858 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 289-448 chr7 120891879 120892053 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -33822 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 432-171 chr3 18901947 18902202 + 3 NA Intergenic Intergenic -246436 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 1234-3 chr2 236465568 236466347 + 3 NA intron (NR_073043, intron 5 of 19) L1MEi|LINE|L1 37740 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 429-261 chr6 138380203 138380377 + 3 NA intron (NM_001368163, intron 1 of 1) intron (NM_001368163, intron 1 of 1) 2647 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 396-330 chr7 40886641 40886818 + 3 NA Intergenic Intergenic 93210 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 684-58 chr2 125663071 125663569 + 3 NA Intergenic MamGyp-int|LTR|Gypsy 454665 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 492-90 chr14 68396452 68396705 + 3 NA intron (NM_133509, intron 8 of 10) Mam_R4|LINE|Dong-R4 232209 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 636-100 chr3 122907191 122907564 + 3 NA Intergenic L1ME4a|LINE|L1 20864 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 463-140 chr2 80410071 80410252 + 3 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 96782 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 487-126 chr19 56524931 56525236 + 3 NA exon (NM_020813, exon 5 of 5) exon (NM_020813, exon 5 of 5) -13865 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 388-91 chr12 126119967 126120129 + 3 NA Intergenic Intergenic 24056 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 242-338 chr6 39586334 39586454 + 3 NA exon (NM_145027, exon 8 of 23) exon (NM_145027, exon 8 of 23) 139014 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 353-534 chr8 115334700 115334876 + 3 NA Intergenic Intergenic 333225 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 414-198 chr22 28225871 28226108 + 3 NA intron (NM_001145418, intron 5 of 22) L1ME1|LINE|L1 -233880 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 410-116 chr18 77575129 77575420 + 3 NA Intergenic L2b|LINE|L2 325426 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 561-26 chr10 80057723 80058099 + 3 NA intron (NR_027431, intron 2 of 4) intron (NR_027431, intron 2 of 4) -20735 NM_001270371 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 559-3 chr1 95476653 95476971 + 3 NA non-coding (NR_033966, exon 3 of 4) non-coding (NR_033966, exon 3 of 4) 2075 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 426-6 chr1 71082678 71083017 + 3 NA intron (NR_046217, intron 1 of 3) L1MEf|LINE|L1 1523 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 724-79 chr6 38469461 38469820 + 3 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -11956 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 366-83 chr11 83659217 83659457 + 3 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) 23088 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 424-109 chr18 7538182 7538352 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -29049 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 607-134 chr7 43723372 43723613 + 3 NA intron (NM_001371314, intron 1 of 7) intron (NM_001371314, intron 1 of 7) 6031 NR_135583 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 420-4 chr1 40523819 40524101 + 3 NA Intergenic L1MA5A|LINE|L1 -7677 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 662-30 chr15 87078933 87079323 + 3 NA Intergenic Intergenic -90702 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 593-47 chr14 99848290 99848663 + 3 NA intron (NM_004434, intron 1 of 21) L1MA8|LINE|L1 55063 NM_004434 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 391-78 chr12 91314276 91314432 + 3 NA Intergenic Intergenic -131537 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 437-106 chr18 5214059 5214303 + 3 NA Intergenic LTR79|LTR|ERVL -16429 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 400-298 chr5 173849386 173849606 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -38853 NM_030627 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 468-46 chr11 42723955 42724305 + 3 NA Intergenic LTR79|LTR|ERVL -470440 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 405-64 chr12 66933399 66933571 + 3 NA Intergenic Intergenic -129216 NM_001366723 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 575-159 chr5 152328897 152329225 + 3 NA Intergenic L3|LINE|CR1 76218 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 502-56 chr11 88229564 88229877 + 3 NA Intergenic L1PB4|LINE|L1 53218 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 1009-19 chr7 85516498 85517218 + 3 NA Intergenic LTR78B|LTR|ERV1 95736 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 460-115 chr18 8063943 8064159 + 3 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 302983 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 296-84 chr12 2350221 2350414 + 3 NA intron (NM_199460, intron 3 of 49).2 MIR|SINE|MIR 80541 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 493-167 chr2 147025100 147025398 + 3 NA Intergenic Intergenic 438192 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 214-62 chr11 32668953 32669067 + 3 NA intron (NM_001008391, intron 9 of 17) intron (NM_001008391, intron 9 of 17) 85179 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 426-22 chr10 19079670 19079856 + 3 NA intron (NM_001142308, intron 2 of 39) L1PA11|LINE|L1 30962 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 689-29 chr14 30763721 30764085 + 3 NA Intergenic L1ME1|LINE|L1 -110632 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 1024-19 chr21 34311327 34311771 + 3 NA Intergenic Intergenic -52475 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 748-50 chr2 105641112 105641448 + 3 NA Intergenic Intergenic -30721 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 589-108 chr4 66426569 66426840 + 3 NA Intergenic L1M1|LINE|L1 149880 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 462-128 chr19 57593088 57593375 + 3 NA 3' UTR (NM_001321146, exon 3 of 3) 3' UTR (NM_001321146, exon 3 of 3) -6654 NM_020880 348327 Hs.97111 NM_020880 ENSG00000183647 ZNF530 - zinc finger protein 530 protein-coding 508-49 chr12 82712772 82713103 + 3 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 25782 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 1352-5 chr3 35047624 35048117 + 3 NA intron (NR_110817, intron 2 of 3) L1M5|LINE|L1 346153 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 956-18 chr2 136627602 136628231 + 3 NA Intergenic MIR|SINE|MIR -137629 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 1110-12 chr22 43497573 43498324 + 3 NA intron (NM_001362786, intron 4 of 6) (ATAT)n|Simple_repeat|Simple_repeat -18306 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 463-308 chr9 78812726 78812888 + 3 NA Intergenic Intergenic 332859 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 366-394 chr6 168175853 168176055 + 3 NA Intergenic MER65-int|LTR|ERV1 50563 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 500-325 chrX 40214294 40214605 + 3 NA Intergenic MIRb|SINE|MIR -37120 NM_001123383 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 618-86 chr3 151436107 151436506 + 3 NA 3' UTR (NM_001178145, exon 2 of 2) 3' UTR (NM_001178145, exon 2 of 2) 4474 NM_001178146 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 612-138 chr8 48293129 48293530 + 3 NA Intergenic L1MD1|LINE|L1 -258238 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 529-58 chr13 58685683 58685906 + 3 NA Intergenic L1ME4b|LINE|L1 -452677 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 387-21 chr1 209262276 209262487 + 3 NA Intergenic Intergenic -63075 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 271-213 chr2 138414279 138414452 + 3 NA Intergenic L1M3c|LINE|L1 -87405 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 524-115 chr2 98261558 98261774 + 3 NA intron (NM_001345864, intron 15 of 21) L1MB5|LINE|L1 -84489 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 493-302 chr8 135383578 135383885 + 3 NA Intergenic L1PREC2|LINE|L1 -73725 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 460-242 chr5 92793620 92793922 + 3 NA Intergenic L1MD2|LINE|L1 777572 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 738-58 chr6 67845735 67846158 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -209405 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 562-228 chr9 107888147 107888355 + 3 NA Intergenic Intergenic -398482 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 466-67 chr12 97384575 97384858 + 3 NA Intergenic Intergenic -78060 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 444-263 chr8 106033143 106033329 + 3 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 27267 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 1939 chr12 37997781 37999142 + 3 NA Intergenic ALR/Alpha|Satellite|centr -318313 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 364-10 chr1 56853084 56853253 + 3 NA Intergenic MER20|DNA|hAT-Charlie -1602 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 435-55 chr12 8548756 8549024 + 3 NA Intergenic Intergenic -7985 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 367-261 chr21 44820960 44821181 + 3 NA Intergenic L1MEj|LINE|L1 -2941 NM_001286416 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 496-223 chr5 156623522 156623736 + 3 NA intron (NM_001128209, intron 5 of 7) intron (NM_001128209, intron 5 of 7) -226666 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 514-105 chr15 100452434 100452758 + 3 NA intron (NM_001290341, intron 13 of 13) L1MA4A|LINE|L1 79657 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 467-169 chr3 5643320 5643586 + 3 NA Intergenic LTR39|LTR|ERV1 -393198 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 383-347 chr7 220662 220840 + 3 NA intron (NM_020223, intron 3 of 9) intron (NM_020223, intron 3 of 9) 28180 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 413-229 chr4 178308764 178308971 + 3 NA Intergenic Intergenic -400931 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 641-64 chr2 115904504 115904869 + 3 NA Intergenic Intergenic 560871 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 512-130 chr2 126963944 126964209 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 65186 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 406-293 chr8 85978993 85979228 + 3 NA Intergenic MLT2B1|LTR|ERVL 90558 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 280-453 chrX 64622599 64622768 + 3 NA Intergenic L1M3c|LINE|L1 -227231 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 804-54 chr5 46421799 46422249 + 3 NA Intergenic L1PA3|LINE|L1 -725644 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 473-147 chr2 183946000 183946307 + 3 NA Intergenic Intergenic -432822 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 344-417 chr6 40224117 40224333 + 3 NA Intergenic HAL1|LINE|L1 131781 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 341-235 chr2 28143468 28143663 + 3 NA intron (NM_199193, intron 8 of 13) L1MA9|LINE|L1 63396 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 344-205 chr19 23587934 23588155 + 3 NA Intergenic L1M2|LINE|L1 99168 NM_138330 171392 Hs.264345 NM_138330 ENSG00000197372 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 563-164 chr6 147779698 147780005 + 3 NA Intergenic Intergenic 271161 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 480-218 chr4 70687640 70687811 + 3 NA promoter-TSS (NM_020368) promoter-TSS (NM_020368) -807 NM_020368 57050 Hs.322901 NM_020368 ENSG00000132467 UTP3 CRL1|CRLZ1|SAS10 UTP3 small subunit processome component protein-coding 497-69 chr13 84169797 84170041 + 3 NA intron (NR_046871, intron 1 of 6) L1P4e|LINE|L1 29317 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 600-108 chr6 40356911 40357253 + 3 NA Intergenic Intergenic -1076 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 731-4 chr1 115543805 115544215 + 3 NA Intergenic L1MB7|LINE|L1 -97960 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 433-311 chrX 129055204 129055403 + 3 NA Intergenic MIR|SINE|MIR 468187 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 792-47 chr5 26344215 26344637 + 3 NA Intergenic Intergenic 694160 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 708-52 chr4 7178390 7178838 + 3 NA Intergenic L1MB8|LINE|L1 -13924 NM_020777 57537 Hs.479099 NM_020777 ENSG00000184985 SORCS2 - sortilin related VPS10 domain containing receptor 2 protein-coding 642-33 chr14 56939824 56940155 + 3 NA Intergenic L1MB5|LINE|L1 126831 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 639-120 chr9 21368356 21368591 + 3 NA promoter-TSS (NM_006900) promoter-TSS (NM_006900) -397 NM_006900 3447 Hs.37026 NM_006900 ENSG00000233816 IFNA13 - interferon alpha 13 protein-coding 939 chr1 30624497 30625077 + 3 NA Intergenic L1MEd|LINE|L1 -93985 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 667-71 chr3 194918485 194918799 + 3 NA Intergenic L1MEf|LINE|L1 -149933 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 517-33 chr10 67413411 67413593 + 3 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -10092 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 197-58 chr14 76795151 76795248 + 3 NA intron (NM_001370747, intron 9 of 11) L1M5|LINE|L1 -8475 NR_104183 100506603 Hs.673984 NR_104183 ENSG00000258301 VASH1-AS1 - VASH1 antisense RNA 1 ncRNA 453-122 chr2 117492661 117492957 + 3 NA Intergenic Intergenic -321882 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 553-232 chr8 90234231 90234489 + 3 NA intron (NR_051989, intron 1 of 3) intron (NR_051989, intron 1 of 3) 12872 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 490-108 chr17 26807369 26807544 + 3 NA Intergenic Intergenic 281785 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 668-117 chrX 39032618 39033084 + 3 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -228968 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 348-550 chr9 27992473 27992646 + 3 NA intron (NM_001354574, intron 5 of 5) L2c|LINE|L2 -418693 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 1360-2 chr12 4744818 4745426 + 3 NA intron (NM_017417, intron 4 of 10) intron (NM_017417, intron 4 of 10) 24722 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 753 chr1 43427963 43428300 + 3 NA intron (NM_015284, intron 26 of 70) intron (NM_015284, intron 26 of 70) -20408 NR_106793 102465440 NR_106793 ENSG00000274975 MIR6735 hsa-mir-6735 microRNA 6735 ncRNA 480-72 chr14 52749148 52749355 + 3 NA intron (NM_001130701, intron 4 of 11) MLT1A|LTR|ERVL-MaLR 19085 NM_001130701 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 890-33 chr7 67673885 67674442 + 3 NA Intergenic MIRc|SINE|MIR 338187 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 511-277 chr9 35635461 35635747 + 3 NA Intergenic L1MEj|LINE|L1 -10666 NR_135130 101926948 Hs.639412 NR_135130 LOC101926948 - uncharacterized LOC101926948 ncRNA 655-106 chr6 125395177 125395511 + 3 NA Intergenic L1ME4a|LINE|L1 -93377 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 893-41 chr7 81807240 81807585 + 3 NA Intergenic Intergenic -37365 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 568-86 chr18 33339656 33339993 + 3 NA intron (NM_001308126, intron 9 of 23) THE1A|LTR|ERVL-MaLR 100747 NM_001371121 671-70 chr3 189279932 189280312 + 3 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -39528 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 307-335 chr4 37038673 37038800 + 3 NA Intergenic L1MA1|LINE|L1 36957 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 325-578 chr9 98359405 98359607 + 3 NA intron (NM_005458, intron 13 of 18) intron (NM_005458, intron 13 of 18) -103857 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 449-51 chr12 15008938 15009192 + 3 NA Intergenic Intergenic 7232 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 743-40 chr2 123844274 123844763 + 3 NA Intergenic L1PA16|LINE|L1 180656 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 549-208 chr8 65223926 65224148 + 3 NA Intergenic Intergenic -43697 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 476-204 chr4 179471102 179471370 + 3 NA Intergenic L2|LINE|L2 -1563300 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 227-344 chr7 42526429 42526515 + 3 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 179975 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 868-29 chr5 4847538 4848123 + 3 NA Intergenic Intergenic 74349 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 564-3 chr1 25637184 25637471 + 3 NA intron (NM_020379, intron 1 of 11) L1ME2|LINE|L1 19859 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 390-394 chr8 118888165 118888340 + 3 NA Intergenic L1M3d|LINE|L1 63633 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 175-181 chrX 44037960 44038023 + 3 NA Intergenic Intergenic -64601 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 513-119 chr19 39533533 39533796 + 3 NA promoter-TSS (NM_152361) promoter-TSS (NM_152361) -812 NM_152361 126272 Hs.135181 NM_152361 ENSG00000176401 EID2B EID-2B|EID-3 EP300 interacting inhibitor of differentiation 2B protein-coding 483-65 chr14 64274210 64274482 + 3 NA intron (NR_073497, intron 1 of 6) L1MA3|LINE|L1 8729 NR_073497 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 247-133 chr15 86247013 86247140 + 3 NA intron (NM_152336, intron 6 of 24) L1MC4|LINE|L1 69892 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 604-113 chr3 135073357 135073726 + 3 NA intron (NM_004441, intron 3 of 15) L1MC5|LINE|L1 278281 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 396-34 chr1 222530543 222530813 + 3 NA intron (NM_024746, intron 6 of 8) intron (NM_024746, intron 6 of 8) 17426 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 722-53 chr3 160470169 160470610 + 3 NA intron (NR_148403, intron 1 of 20) THE1C-int|LTR|ERVL-MaLR 15358 NR_148403 100174949 NR_148401 ENSG00000248710 TRIM59-IFT80 IFT80-L TRIM59-IFT80 protein ncRNA 359-232 chr2 82199443 82199583 + 3 NA Intergenic MER4D0|LTR|ERV1 -657290 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 380-194 chr2 129409998 129410168 + 3 NA Intergenic L1M8|LINE|L1 -136192 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 384-294 chr5 73643027 73643247 + 3 NA intron (NM_001177693, intron 1 of 35) MER97b|DNA|hAT-Tip100 16979 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 491-221 chr5 174259435 174259672 + 3 NA Intergenic L1ME4a|LINE|L1 -76801 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 561-104 chr2 132469320 132469624 + 3 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 35761 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 285-213 chr2 150559220 150559387 + 3 NA intron (NR_110241, intron 4 of 5) Tigger13a|DNA|TcMar-Tigger 12918 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 569-163 chr7 16914068 16914425 + 3 NA Intergenic L1MA4|LINE|L1 -32263 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 665-26 chr13 79018041 79018453 + 3 NA Intergenic L1PA16|LINE|L1 -178197 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 373-423 chr8 123904990 123905153 + 3 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 53084 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 421-43 chr11 90420959 90421234 + 3 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 134761 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 411-311 chr9 81191064 81191264 + 3 NA Intergenic L1MEf|LINE|L1 498371 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 633-11 chr10 30894534 30894900 + 3 NA intron (NM_001143766, intron 5 of 7) intron (NM_001143766, intron 5 of 7) 104800 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 291-70 chr11 27575513 27575655 + 3 NA intron (NR_033315, intron 2 of 6) intron (NR_033315, intron 2 of 6) 59043 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 592-65 chr18 1834577 1834900 + 3 NA Intergenic L1M1|LINE|L1 -475109 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 590-29 chr12 8476972 8477317 + 3 NA intron (NM_001007033, intron 5 of 5) intron (NM_001007033, intron 5 of 5) 21182 NM_001317999 93978 Hs.591147 NM_001007033 ENSG00000205846 CLEC6A CLEC4N|CLECSF10|dectin-2 C-type lectin domain containing 6A protein-coding 455-240 chr6 62236044 62236205 + 3 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 50101 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 456-185 chr21 23492570 23492753 + 3 NA Intergenic Intergenic -107826 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 802-58 chr5 141250064 141250435 + 3 NA TTS (NM_018935) TTS (NM_018935) 4854 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 544-225 chr8 79988534 79988776 + 3 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 41604 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 714-68 chr7 55101981 55102437 + 3 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -7630 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 648-78 chr2 215802634 215803001 + 3 NA intron (NR_037195, intron 1 of 9) L1MB8|LINE|L1 40719 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 604-68 chr18 12582307 12582628 + 3 NA intron (NM_020148, intron 2 of 15) intron (NM_020148, intron 2 of 15) 74265 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 506-94 chr15 35128117 35128315 + 3 NA Intergenic Intergenic -42808 NM_001355281 388112 Hs.635882 NM_001355281 ENSG00000255192 NANOGP8 NANOGP1|PN8 Nanog homeobox retrogene P8 protein-coding 555-161 chr5 79111051 79111303 + 3 NA promoter-TSS (NM_001713) promoter-TSS (NM_001713) -632 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 396-350 chr8 71545103 71545370 + 3 NA intron (NM_001370336, intron 1 of 17) L2c|LINE|L2 2468 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 328-605 chr9 35131534 35131687 + 3 NA Intergenic MER4-int|LTR|ERV1 -15748 NM_025182 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 584-29 chr11 110354937 110355289 + 3 NA promoter-TSS (NR_135100) promoter-TSS (NR_135100) -1 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 497-121 chr2 57384562 57384739 + 3 NA Intergenic Intergenic -523001 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 408-3 chr1 43492244 43492408 + 3 NA Intergenic L1MB7|LINE|L1 -33711 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 535-73 chr14 62599315 62599628 + 3 NA Intergenic L1MA8|LINE|L1 445987 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 437-172 chr3 68354523 68354829 + 3 NA intron (NM_001252216, intron 2 of 4) MLT1A1|LTR|ERVL-MaLR -145961 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 339-413 chr4 77477401 77477586 + 3 NA Intergenic L1PA17|LINE|L1 -34260 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 962-20 chr7 33620086 33620551 + 3 NA intron (NM_001348041, intron 22 of 22) L1ME3E|LINE|L1 -284597 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 519-81 chr18 6554408 6554748 + 3 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 43162 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 466-210 chr5 122270264 122270489 + 3 NA Intergenic L1PB1|LINE|L1 -41315 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 196-173 chr3 100079310 100079417 + 3 NA intron (NM_001042459, intron 1 of 4) MLT1H2|LTR|ERVL-MaLR 35150 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 515-274 chr9 21940048 21940273 + 3 NA Intergenic MER34B-int|LTR|ERV1 -26979 NR_024274 51198 Hs.721053 NM_016349 CDKN2A-DT C9orf53|CDKN2A-AS1|bA149I2.3 CDKN2A divergent transcript ncRNA 925-21 chr20 36002867 36003381 + 3 NA intron (NM_001365709, intron 8 of 11) L1MEc|LINE|L1 34534 NM_001365709 140894 Hs.732697 NM_080834 ENSG00000149646 CNBD2 C20orf152|CNMPD1 cyclic nucleotide binding domain containing 2 protein-coding 386-24 chr10 7003522 7003679 + 3 NA Intergenic Intergenic 183184 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 479-94 chr19 37691677 37691959 + 3 NA intron (NM_152605, intron 1 of 3) intron (NM_152605, intron 1 of 3) 497 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 556-90 chr18 72195311 72195535 + 3 NA Intergenic L1MC4|LINE|L1 348919 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 548-253 chrX 84542765 84543102 + 3 NA Intergenic Intergenic -40480 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 453-82 chr16 22161714 22161932 + 3 NA promoter-TSS (NM_001365288) promoter-TSS (NM_001365288) -708 NM_001365288 100288072 NM_001365288 SDR42E2 - short chain dehydrogenase/reductase family 42E, member 2 protein-coding 392-246 chr5 29620743 29620904 + 3 NA Intergenic (TTAATA)n|Simple_repeat|Simple_repeat -224847 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 331-373 chr4 30508916 30509095 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -211364 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 694-105 chr5 78430849 78431210 + 3 NA intron (NM_004866, intron 6 of 8) intron (NM_004866, intron 6 of 8) 70412 NR_110885 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 498-225 chr5 141283220 141283449 + 3 NA Intergenic Intergenic 20715 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 312-532 chr8 129169713 129169892 + 3 NA Intergenic Intergenic 71438 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 409-295 chr8 80120573 80120863 + 3 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) -39887 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 345-496 chr7 46921066 46921272 + 3 NA Intergenic Intergenic -224047 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 440-105 chr19 23833583 23833801 + 3 NA non-coding (NR_149350, exon 4 of 4) non-coding (NR_149350, exon 4 of 4) 70688 NR_149352 388524 Hs.560655 NM_001005472 RPSAP58 RPSA_30_1642 ribosomal protein SA pseudogene 58 protein-coding 369-377 chr7 6704858 6705017 + 3 NA intron (NM_006956, intron 2 of 5) intron (NM_006956, intron 2 of 5) 2010 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 653-124 chr8 100578324 100578672 + 3 NA intron (NM_152628, intron 12 of 13) intron (NM_152628, intron 12 of 13) -18739 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 317-212 chr2 5739357 5739493 + 3 NA Intergenic Intergenic 47041 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 263-418 chr8 83457274 83457367 + 3 NA Intergenic L1PA13|LINE|L1 53562 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 323-167 chr15 95717258 95717433 + 3 NA Intergenic Intergenic 284252 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 791-62 chr6 51230370 51230767 + 3 NA Intergenic MIR|SINE|MIR -391302 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 343-553 chr8 118214766 118214978 + 3 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -103053 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 567-208 chr9 137632565 137632792 + 3 NA intron (NM_001354612, intron 1 of 8) AluJo|SINE|Alu 13673 NM_001354259 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 475-131 chr2 77559681 77559904 + 3 NA Intergenic Intergenic -37359 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 406-259 chr6 62929618 62929819 + 3 NA Intergenic Intergenic 390259 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 827-15 chr14 36152101 36152522 + 3 NA intron (NR_049735, intron 3 of 3) AluJr|SINE|Alu 24340 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 1093-6 chr18 22657416 22658233 + 3 NA Intergenic L1PA15-16|LINE|L1 129013 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 708-21 chr13 43578870 43579346 + 3 NA intron (NM_001347965, intron 1 of 15) MIR|SINE|MIR 50369 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 903-44 chr9 13836252 13836645 + 3 NA Intergenic Intergenic -91523 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 563-172 chr7 51991687 51991911 + 3 NA Intergenic AluSp|SINE|Alu -598543 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 888-6 chr11 71316899 71317403 + 3 NA Intergenic AluSq2|SINE|Alu -92355 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 512-134 chr2 150660093 150660411 + 3 NA Intergenic MSTB1-int|LTR|ERVL-MaLR 31355 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 485-15 chr1 187218245 187218526 + 3 NA intron (NR_126347, intron 1 of 3) L1MA1|LINE|L1 125543 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 511-242 chr7 6491581 6491925 + 3 NA Intergenic AluSx1|SINE|Alu -7601 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 1085-12 chr3 121556993 121557576 + 3 NA Intergenic L2b|LINE|L2 -10665 NM_001012659 503582 Hs.224976 NM_001012659 ENSG00000186103 ARGFX - arginine-fifty homeobox protein-coding 845-7 chr12 33376725 33377110 + 3 NA intron (NM_198992, intron 6 of 6) intron (NM_198992, intron 6 of 6) 62902 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 470-44 chr12 4936750 4937103 + 3 NA Intergenic Intergenic 27021 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 538-177 chr4 71279335 71279650 + 3 NA intron (NM_001098484, intron 3 of 25) L1MA9|LINE|L1 -59561 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 607-120 chr5 107113194 107113579 + 3 NA Intergenic Intergenic -102372 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 798-37 chr3 27206319 27206746 + 3 NA intron (NM_152534, intron 24 of 38) intron (NM_152534, intron 24 of 38) 9991 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 547-127 chr21 23018743 23018957 + 3 NA Intergenic Intergenic -60434 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 237-177 chr2 67134365 67134449 + 3 NA intron (NR_038844, intron 6 of 7) intron (NR_038844, intron 6 of 7) 47961 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 909-21 chr4 107589280 107589844 + 3 NA Intergenic MER61-int|LTR|ERV1 130672 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 421-193 chr3 138646520 138646700 + 3 NA Intergenic L1M2b|LINE|L1 37561 NM_018147 55179 Hs.173438 NM_018147 ENSG00000158234 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 616-168 chr8 31714777 31715124 + 3 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 75198 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 487-300 chr8 136463039 136463219 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR -67669 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 472-334 chr8 135556790 135557080 + 3 NA intron (NM_006558, intron 4 of 8) L2c|LINE|L2 99479 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 1086 chr1 34445597 34446247 + 3 NA Intergenic Intergenic 223772 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 443-280 chr7 64393860 64394027 + 3 NA Intergenic ALR/Alpha|Satellite|centr -39750 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 445-94 chr17 62941913 62942094 + 3 NA Intergenic Intergenic -2212 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 472-309 chr8 57609224 57609490 + 3 NA Intergenic L1MA3|LINE|L1 -136792 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 582-23 chr12 2072224 2072527 + 3 NA intron (NM_199460, intron 1 of 49).2 AluSx|SINE|Alu 19090 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 267-159 chr18 66351486 66351607 + 3 NA Intergenic Intergenic 252544 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 798-67 chr8 126043187 126043674 + 3 NA Intergenic L1PA15-16|LINE|L1 -92233 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 732-81 chr6 62679092 62679395 + 3 NA Intergenic Intergenic -393016 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 884-39 chr5 71948973 71949570 + 3 NA Intergenic Intergenic -158204 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 438-273 chr8 86264238 86264463 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -33969 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 685-97 chr8 121662394 121662874 + 3 NA Intergenic Intergenic -21194 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 234-343 chr6 65738449 65738544 + 3 NA Intergenic L2|LINE|L2 -31270 NM_001142800 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 655-51 chr19 37392983 37393353 + 3 NA TTS (NM_032453) TTS (NM_032453) 22069 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 486-71 chr14 21145804 21146014 + 3 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat 10154 NM_001004731 390445 Hs.553768 NM_001004731 ENSG00000169327 OR5AU1 OR14-38 olfactory receptor family 5 subfamily AU member 1 protein-coding 589-137 chr6 2560136 2560402 + 3 NA Intergenic Intergenic -74231 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 223-88 chr14 71284501 71284600 + 3 NA Intergenic HAL1b|LINE|L1 -35926 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 931-24 chr6 65361669 65362195 + 3 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 60514 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 587-140 chr5 155536847 155537057 + 3 NA Intergenic Intergenic 523197 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 520-250 chr5 174458947 174459229 + 3 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 122734 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 515-120 chr2 100161204 100161453 + 3 NA Intergenic Intergenic -18738 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 1277-4 chr3 144247269 144248055 + 3 NA Intergenic L2a|LINE|L2 274581 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 791-53 chr4 80879946 80880436 + 3 NA intron (NM_152770, intron 4 of 5) GA-rich|Low_complexity|Low_complexity -150517 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 467-48 chr11 69551826 69552020 + 3 NA Intergenic Intergenic 66362 NR_120543 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 368-293 chr3 74254728 74254926 + 3 NA Intergenic Intergenic 266313 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 665-68 chr4 82115935 82116217 + 3 NA Intergenic L1PB2|LINE|L1 257915 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 522-97 chr16 62907582 62907847 + 3 NA Intergenic Intergenic -871276 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 486-304 chr9 24739929 24740272 + 3 NA Intergenic LTR1A2|LTR|ERV1 -194203 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 483-99 chr19 52289504 52289802 + 3 NA intron (NM_001010851, intron 3 of 3) intron (NM_001010851, intron 3 of 3) -7516 NM_001297625 147657 Hs.729317 NM_144684 ENSG00000198464 ZNF480 - zinc finger protein 480 protein-coding 695-36 chr16 47800193 47800657 + 3 NA Intergenic L1PA11|LINE|L1 -58156 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 385-202 chr2 214545700 214545876 + 3 NA intron (NR_159945, intron 4 of 4) intron (NR_159945, intron 4 of 4) 35606 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 534-162 chr3 96054378 96054620 + 3 NA Intergenic Intergenic -305465 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 635-93 chr6 27351404 27351627 + 3 NA Intergenic L1MA4|LINE|L1 20010 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 626-124 chr6 98572235 98572650 + 3 NA Intergenic Intergenic 259258 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 407-238 chr5 5647756 5647981 + 3 NA Intergenic Intergenic 225191 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 444-8 chr1 90785455 90785664 + 3 NA intron (NR_135038, intron 2 of 2) intron (NR_135038, intron 2 of 2) 50602 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 471-14 chr1 195883164 195883473 + 3 NA Intergenic (ATACAC)n|Simple_repeat|Simple_repeat 205397 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 339-131 chr12 83845451 83845599 + 3 NA Intergenic L1ME3D|LINE|L1 1067274 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 696-110 chr8 121220069 121220320 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -408148 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 483-217 chr5 126836143 126836398 + 3 NA non-coding (NR_134488, exon 12 of 12) non-coding (NR_134488, exon 12 of 12) 59134 NM_005573 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 431-62 chr12 9635356 9635647 + 3 NA intron (NR_046448, intron 1 of 4) intron (NR_046448, intron 1 of 4) 2082 NR_046448 374443 Hs.569124 NR_002814 ENSG00000256594 LOC374443 - C-type lectin domain family 2 member D pseudogene pseudo 429-247 chr5 166125991 166126230 + 3 NA Intergenic Charlie8|DNA|hAT-Charlie 800260 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 339-510 chr6 154309094 154309284 + 3 NA intron (NM_001130699, intron 1 of 12) intron (NM_001130699, intron 1 of 12) 20892 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 947-11 chr19 24333981 24334527 + 3 NA Intergenic ALR/Alpha|Satellite|centr -170807 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 779-49 chr7 6681015 6681356 + 3 NA Intergenic Intergenic 25762 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 363-370 chr5 124878167 124878394 + 3 NA Intergenic Intergenic -133168 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 369-367 chr6 145198214 145198362 + 3 NA Intergenic Intergenic 488589 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 413-52 chr11 36762721 36762890 + 3 NA Intergenic L1ME3A|LINE|L1 -164526 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 611-52 chr16 60160327 60160725 + 3 NA Intergenic Intergenic 199267 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 559-76 chr17 72812015 72812408 + 3 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -171739 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 762-11 chr10 85651939 85652406 + 3 NA intron (NM_017551, intron 12 of 15) intron (NM_017551, intron 12 of 15) 74441 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 348-133 chr14 42410592 42410799 + 3 NA Intergenic L1M4|LINE|L1 803839 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 369-314 chr5 23670557 23670820 + 3 NA Intergenic Intergenic 163033 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 729-16 chr11 50464336 50464791 + 3 NA Intergenic ALR/Alpha|Satellite|centr 55416 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 717-29 chr14 63128947 63129271 + 3 NA Intergenic Intergenic -75334 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 903 chr1 32225415 32225912 + 3 NA intron (NM_003757, intron 5 of 11) AluSq2|SINE|Alu -3292 NR_133636 56063 Hs.272299 NM_019118 ENSG00000160055 TMEM234 AASL548|C1orf91|PRO1105|RP4-622L5|dJ622L5.7 transmembrane protein 234 protein-coding 487-205 chr4 60454993 60455275 + 3 NA Intergenic AluSx|SINE|Alu -467485 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 261-111 chr14 78515492 78515671 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 111862 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 458-222 chr6 60231333 60231694 + 3 NA Intergenic ALR/Alpha|Satellite|centr -1342617 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 602-127 chr7 113959873 113960280 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -41067 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 333-526 chr7 14253518 14253664 + 3 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -262166 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 566-192 chr8 83417864 83418208 + 3 NA Intergenic L1MC3|LINE|L1 14278 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 648-29 chr12 61525202 61525511 + 3 NA Intergenic Intergenic 667483 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 374-129 chr16 60869019 60869188 + 3 NA Intergenic Intergenic 186663 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 495-143 chr21 35261029 35261194 + 3 NA Intergenic AluJb|SINE|Alu -211813 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 706-11 chr11 50625098 50625454 + 3 NA Intergenic ALR/Alpha|Satellite|centr 216129 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 580-178 chr7 23957233 23957531 + 3 NA Intergenic Intergenic 247163 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 767-44 chr6 90820693 90821081 + 3 NA Intergenic Intergenic -233815 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 750-61 chr5 141091424 141091932 + 3 NA Intergenic Intergenic -2937 NM_018936 56133 Hs.533023 NM_018936 ENSG00000112852 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 719-67 chr5 143194327 143194844 + 3 NA TTS (NR_046816) TTS (NR_046816) 2085 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 788-23 chr17 70578188 70578653 + 3 NA Intergenic Intergenic 408885 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 531-223 chr7 7991650 7991939 + 3 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 22998 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 512-2 chr1 14462574 14462855 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -42741 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 749-93 chr8 84669811 84670151 + 3 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -35946 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 190-109 chr22 25704939 25705019 + 3 NA intron (NM_001362778, intron 14 of 19) intron (NM_001362778, intron 14 of 19) -37209 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 426-175 chr3 25048439 25048654 + 3 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 219223 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 723-55 chr5 1679825 1680200 + 3 NA Intergenic L1MA4A|LINE|L1 28856 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 509-129 chr20 53254561 53254908 + 3 NA exon (NM_001193421, exon 2 of 3) exon (NM_001193421, exon 2 of 3) 69451 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 553-234 chr8 114255361 114255669 + 3 NA Intergenic L1M2|LINE|L1 -818576 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 470-25 chr10 57291156 57291419 + 3 NA Intergenic L1ME2z|LINE|L1 13272 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 182-125 chr4 126750759 126750855 + 3 NA Intergenic Intergenic -882150 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 382-346 chr5 151434178 151434369 + 3 NA Intergenic L1MEg|LINE|L1 -2773 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 512-287 chr9 627436 627725 + 3 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) -59187 NM_001354336 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 450-297 chr8 70602495 70602680 + 3 NA intron (NM_001317804, intron 2 of 11) intron (NM_001317804, intron 2 of 11) 5082 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 506-41 chr10 82789761 82790085 + 3 NA intron (NR_163252, intron 3 of 8) L1M4|LINE|L1 -557003 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 294-384 chr5 104468301 104468480 + 3 NA Intergenic L1M4b|LINE|L1 -631084 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 246-219 chr2 207406663 207406816 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -123223 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 597-53 chr16 22117271 22117637 + 3 NA intron (NM_173615, intron 11 of 33) intron (NM_173615, intron 11 of 33) 24913 NM_173615 146177 Hs.10697 NM_173615 ENSG00000175267 VWA3A - von Willebrand factor A domain containing 3A protein-coding 521-79 chr14 37947225 37947418 + 3 NA Intergenic L1PA13|LINE|L1 -45197 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 714-24 chr14 86645349 86645698 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -260255 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 511-88 chr16 69886264 69886442 + 3 NA intron (NM_001270453, intron 4 of 20) AluJo|SINE|Alu -38686 NM_199424 11060 Hs.408458 NM_007014 ENSG00000198373 WWP2 AIP2|WWp2-like WW domain containing E3 ubiquitin protein ligase 2 protein-coding 513-200 chr4 36607596 36607805 + 3 NA intron (NR_149124, intron 2 of 4) L1ME3Cz|LINE|L1 34200 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 308-518 chr8 129083820 129084010 + 3 NA Intergenic L2b|LINE|L2 -117914 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 470-218 chr5 106545136 106545304 + 3 NA Intergenic L1M3a|LINE|L1 465794 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 347-557 chr9 103598290 103598486 + 3 NA Intergenic Intergenic -273355 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 423-130 chr2 60060017 60060280 + 3 NA Intergenic Intergenic 322888 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 483-26 chr10 54478512 54478733 + 3 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -7608 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 246-126 chr14 87293811 87293936 + 3 NA Intergenic Intergenic 361421 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 710-26 chr13 82379781 82380157 + 3 NA Intergenic L1M2|LINE|L1 -1152986 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 472-247 chr5 54496884 54497116 + 3 NA Intergenic LTR60B|LTR|ERV1 -20759 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 461-34 chr10 57312211 57312445 + 3 NA Intergenic Intergenic -7769 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 515-56 chr12 81892360 81892535 + 3 NA Intergenic HERVL-int|LTR|ERVL -61272 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 718-22 chr14 58693769 58694112 + 3 NA Intergenic Intergenic 55103 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 982-8 chr11 54891701 54892261 + 3 NA Intergenic ALR/Alpha|Satellite|centr 185149 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 529-223 chr8 129007465 129007775 + 3 NA Intergenic Intergenic -41619 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 754-21 chr14 79955149 79955633 + 3 NA Intergenic L1PA11|LINE|L1 -256028 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 708-57 chr5 12828538 12828868 + 3 NA Intergenic L1ME2|LINE|L1 160844 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 569-97 chr2 86822357 86822639 + 3 NA intron (NM_172101, intron 5 of 6) intron (NM_172101, intron 5 of 6) -14102 NM_001145873 925 Hs.85258 NM_001768 ENSG00000153563 CD8A CD8|Leu2|p32 CD8a molecule protein-coding 192-170 chr5 138780065 138780172 + 3 NA intron (NM_001323982, intron 2 of 18) L1M5|LINE|L1 -26194 NR_134244 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 563-13 chr10 17265710 17266013 + 3 NA Intergenic Intergenic -35876 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 698-80 chr7 68671815 68672219 + 3 NA Intergenic Intergenic 651764 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 876-24 chr3 67285012 67285484 + 3 NA Intergenic MIRc|SINE|MIR 59784 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 249-278 chr3 177880065 177880230 + 3 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 63282 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 583-79 chr19 44326854 44327192 + 3 NA 3' UTR (NM_001083335, exon 5 of 5) 3' UTR (NM_001083335, exon 5 of 5) -21998 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 376-407 chr8 105544309 105544466 + 3 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 224844 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 437-72 chr14 45967603 45967829 + 3 NA Intergenic L1MEh|LINE|L1 -96443 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 506-114 chr18 36791276 36791514 + 3 NA intron (NM_001271955, intron 4 of 4) intron (NM_001271955, intron 4 of 4) 37607 NM_001330572 25941 Hs.436636 NM_015476 ENSG00000134779 TPGS2 C18orf10|HMFN0601|L17|PGs2 tubulin polyglutamylase complex subunit 2 protein-coding 505-253 chr5 150962451 150962641 + 3 NA Intergenic MER4-int|LTR|ERV1 -15962 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 360-371 chr5 86431126 86431400 + 3 NA Intergenic Intergenic 148819 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 530-253 chr8 96397021 96397205 + 3 NA Intergenic Intergenic -9675 NR_125828 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 668-65 chr3 69625482 69625814 + 3 NA Intergenic L1MA2|LINE|L1 -113816 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 905-2 chr1 49077696 49078292 + 3 NA intron (NM_001323575, intron 4 of 12) MIRb|SINE|MIR -179417 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 353-257 chr2 128146098 128146376 + 3 NA intron (NR_027671, intron 18 of 40) AluJr4|SINE|Alu 55037 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 383-332 chr5 179037806 179037996 + 3 NA Intergenic MLT1G3|LTR|ERVL-MaLR 14097 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 490-225 chr5 112324279 112324482 + 3 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 94897 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 670-92 chr5 10034833 10035279 + 3 NA Intergenic Intergenic -131232 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 667-92 chr5 132142759 132143148 + 3 NA Intergenic L1MC4|LINE|L1 -41923 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 683-6 chr10 45497510 45497877 + 3 NA intron (NM_001282866, intron 2 of 7) L1M4b|LINE|L1 37678 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 867-10 chr10 78722919 78723298 + 3 NA Intergenic Intergenic 344340 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 426-276 chr7 88849998 88850175 + 3 NA intron (NM_181646, intron 1 of 3) L1MEc|LINE|L1 -54349 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 740-31 chr17 14825689 14826238 + 3 NA Intergenic Intergenic -188842 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 415-262 chr7 111185886 111186119 + 3 NA intron (NM_032549, intron 3 of 5) Charlie4a|DNA|hAT-Charlie 94875 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 799-53 chr8 46763113 46763583 + 3 NA Intergenic MER112|DNA|hAT-Charlie -77538 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 363-431 chr8 47722445 47722630 + 3 NA intron (NM_001352961, intron 16 of 16) HAL1ME|LINE|L1 15627 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 747-71 chr9 24649688 24650221 + 3 NA Intergenic MER52A|LTR|ERV1 -104057 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 434-44 chr10 115641320 115641491 + 3 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 548040 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 481-159 chr2 184994161 184994410 + 3 NA Intergenic Intergenic 172787 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 644-17 chr12 97427892 97428233 + 3 NA Intergenic Tigger19a|DNA|TcMar-Tigger -34714 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 340-438 chr5 38602271 38602516 + 3 NA intron (NR_103554, intron 2 of 8) L2c|LINE|L2 -6988 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 701-106 chr9 108686889 108687334 + 3 NA Intergenic Intergenic 168875 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 780-57 chr6 120211409 120211909 + 3 NA Intergenic Intergenic 196480 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 792-16 chr12 74503080 74503632 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -34479 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 328-579 chr8 125291217 125291353 + 3 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -139073 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 501-29 chr10 93637614 93637858 + 3 NA intron (NM_006204, intron 11 of 21) L1MEg|LINE|L1 25199 NM_006204 5146 Hs.658121 NM_006204 ENSG00000095464 PDE6C ACHM5|COD4|PDEA2 phosphodiesterase 6C protein-coding 366-4 chr1 41922989 41923149 + 3 NA intron (NR_038261, intron 1 of 3) L1M5|LINE|L1 -4147 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 293-482 chr9 118965136 118965298 + 3 NA Intergenic MIR|SINE|MIR 285546 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 922-42 chr8 139690169 139690849 + 3 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 12614 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 614-30 chr14 45367775 45368075 + 3 NA Intergenic Intergenic -114723 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 420-175 chr22 43349591 43349758 + 3 NA Intergenic Intergenic -6302 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 663-104 chr7 39145339 39145783 + 3 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -131994 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 606-151 chr7 56716352 56716739 + 3 NA Intergenic AluYj4|SINE|Alu 96191 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 553-230 chr8 86431087 86431515 + 3 NA intron (NM_007013, intron 12 of 24) (TA)n|Simple_repeat|Simple_repeat 77385 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 233-137 chr18 10997795 10997930 + 3 NA intron (NM_022068, intron 2 of 51) L1MEf|LINE|L1 150900 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 753-47 chr5 6840439 6840874 + 3 NA Intergenic Intergenic -12735 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 401-11 chr1 167590753 167590905 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -37067 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 495-187 chr4 160343038 160343308 + 3 NA Intergenic Intergenic -565389 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 413-34 chr10 48824167 48824419 + 3 NA intron (NM_020945, intron 35 of 61) MIRb|SINE|MIR 89942 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 477-78 chr12 59216134 59216370 + 3 NA Intergenic Intergenic -295714 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 616-68 chr19 12269849 12270212 + 3 NA Intergenic Intergenic 24582 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 315-251 chr2 113014088 113014272 + 3 NA Intergenic MERX|DNA|TcMar-Tigger 8721 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 249-204 chr2 89840463 89840557 + 3 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -202603 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 806-28 chr18 59487390 59487782 + 3 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) -128321 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 475-114 chr18 22309206 22309513 + 3 NA Intergenic Intergenic 108556 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 463-305 chr9 31866841 31867078 + 3 NA Intergenic L1MA5A|LINE|L1 -485469 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 443-144 chr2 40631370 40631631 + 3 NA Intergenic Intergenic -119065 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 949-7 chr18 67284957 67285554 + 3 NA Intergenic Intergenic 203671 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 465-104 chr17 68744647 68744944 + 3 NA Intergenic Intergenic 116641 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 720-61 chr4 52776523 52776945 + 3 NA Intergenic Intergenic -13260 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 541-207 chr6 142365196 142365509 + 3 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 63345 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 244-231 chr3 95957502 95957705 + 3 NA Intergenic Intergenic -274410 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 506-235 chr5 104225004 104225209 + 3 NA Intergenic Intergenic -662317 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 686-30 chr17 69986077 69986619 + 3 NA Intergenic L1MA2|LINE|L1 24641 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 392-152 chr2 110765068 110765310 + 3 NA intron (NM_001371254, intron 1 of 18) L1ME2z|LINE|L1 32616 NM_001371254 715-28 chr19 37430190 37430699 + 3 NA intron (NM_152484, intron 3 of 5) L1M4b|LINE|L1 37000 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 757-16 chr14 86970636 86970946 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 65013 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 552-125 chr21 16245064 16245336 + 3 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) 39568 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 924-34 chr5 77091750 77092349 + 3 NA intron (NR_024398, intron 2 of 3) intron (NR_024398, intron 2 of 3) -4764 NR_138050 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 1135 chr1 222172560 222173398 + 3 NA Intergenic L1PA16|LINE|L1 -194459 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 420-242 chr5 120601894 120602155 + 3 NA intron (NM_001308088, intron 1 of 3) L1PA16|LINE|L1 70560 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 407-146 chr2 115430625 115430843 + 3 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 86919 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 424-69 chr14 62621525 62621755 + 3 NA Intergenic MIRc|SINE|MIR 423818 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 516-108 chr18 74784382 74784787 + 3 NA intron (NM_017757, intron 3 of 7) intron (NM_017757, intron 3 of 7) 153621 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 599-146 chr9 102924660 102924958 + 3 NA Intergenic L1M5|LINE|L1 -70524 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 498-195 chr4 64230157 64230439 + 3 NA Intergenic LTR25-int|LTR|ERV1 179152 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 734-17 chr12 22723292 22723602 + 3 NA Intergenic Intergenic 98276 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 553-231 chr8 89304866 89305074 + 3 NA Intergenic Intergenic 452741 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 783-49 chr21 32004124 32004587 + 3 NA TTS (NM_014586) TTS (NM_014586) 81940 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 525-181 chr4 117110352 117110684 + 3 NA Intergenic L1ME2|LINE|L1 -24942 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 207-21 chr1 214035413 214035502 + 3 NA intron (NM_001270616, intron 4 of 4) intron (NM_001270616, intron 4 of 4) 46924 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 738-12 chr11 82393509 82393976 + 3 NA intron (NR_120571, intron 1 of 7) L1MB8|LINE|L1 10171 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 644-62 chr3 95428495 95428898 + 3 NA Intergenic Intergenic 254497 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 462-75 chr14 38079287 38079592 + 3 NA Intergenic Intergenic -128465 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 925-5 chr10 92195846 92196193 + 3 NA intron (NM_001178137, intron 2 of 9) intron (NM_001178137, intron 2 of 9) 47260 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 368-42 chr10 23303253 23303497 + 3 NA exon (NM_001365862, exon 5 of 16) exon (NM_001365862, exon 5 of 16) -40582 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 787-22 chr2 195144850 195145270 + 3 NA Intergenic Intergenic 414465 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 1230-9 chr9 132694036 132694749 + 3 NA non-coding (NR_133925, exon 6 of 6) non-coding (NR_133925, exon 6 of 6) 23928 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 322-430 chr5 72988563 72988711 + 3 NA intron (NM_001146032, intron 2 of 24) intron (NM_001146032, intron 2 of 24) 32596 NM_138782 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 487-19 chr1 152244015 152244357 + 3 NA Intergenic L2a|LINE|L2 -19990 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 521-252 chr8 59219457 59219819 + 3 NA Intergenic L1MEc|LINE|L1 100428 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 828-41 chr5 180056572 180057008 + 3 NA intron (NM_001280801, intron 1 of 7) L1ME3|LINE|L1 14969 NM_001280801 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 574-4 chr1 91359120 91359324 + 3 NA intron (NM_001017975, intron 13 of 38) L1PA11|LINE|L1 45615 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 678-75 chr4 59477215 59477613 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 463841 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 255-92 chr13 59708391 59708557 + 3 NA intron (NM_001258366, intron 26 of 26) L2-3_Crp|LINE|L2 -304244 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 420-16 chr1 181524909 181525190 + 3 NA intron (NM_001205293, intron 3 of 47) L2c|LINE|L2 41532 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 729-4 chr1 147302875 147303307 + 3 NA Intergenic Intergenic 59949 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 511-14 chr1 182327812 182328144 + 3 NA Intergenic AluSz6|SINE|Alu -13917 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 496-159 chr20 10540915 10541143 + 3 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 105724 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 239-441 chr9 124907247 124907363 + 3 NA intron (NM_002077, intron 12 of 22) L1M5|LINE|L1 33778 NM_002077 2800 Hs.59504 NM_002077 ENSG00000136935 GOLGA1 golgin-97 golgin A1 protein-coding 730-86 chr9 84640673 84640986 + 3 NA Intergenic Intergenic -27629 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 481-33 chr10 62686879 62687109 + 3 NA Intergenic L2c|LINE|L2 -117726 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 277-388 chr7 103962767 103962925 + 3 NA intron (NM_005045, intron 1 of 64) intron (NM_005045, intron 1 of 64) 26670 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 603-67 chr17 80114704 80115050 + 3 NA intron (NM_001079804, intron 15 of 19) L1M4|LINE|L1 13296 NM_000152 2548 Hs.1437 NM_000152 ENSG00000171298 GAA LYAG glucosidase alpha, acid protein-coding 527-30 chr10 59978664 59978950 + 3 NA Intergenic L1MC4|LINE|L1 -17894 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 858-39 chr6 136737958 136738416 + 3 NA intron (NM_005923, intron 1 of 29) intron (NM_005923, intron 1 of 29) -45860 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 707-60 chr2 236916599 236917161 + 3 NA Intergenic Intergenic 139287 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 818-39 chr4 80917 81396 + 3 NA intron (NM_182524, intron 3 of 3) L1PA8|LINE|L1 27835 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 535-71 chr14 19852661 19852948 + 3 NA Intergenic L1PA13|LINE|L1 16369 NR_145507 283617 NM_001348266 ENSG00000176290 OR4K3 OR14-10|OR4K3P olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding 634-107 chr3 90343637 90343968 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1236181 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1018-16 chr2 75184814 75185277 + 3 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 14475 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 888-38 chr8 83966310 83966782 + 3 NA Intergenic Intergenic -216241 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 653-52 chr17 73018968 73019324 + 3 NA intron (NM_001352692, intron 4 of 9) L1MEf|LINE|L1 73542 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 796-31 chr2 183893839 183894447 + 3 NA Intergenic Intergenic -484832 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 473-56 chr12 32769438 32769656 + 3 NA Intergenic Intergenic -13650 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 694-118 chr7 10913279 10913668 + 3 NA Intergenic Intergenic 26680 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 831-42 chr6 27455109 27455711 + 3 NA intron (NM_001347832, intron 5 of 5) intron (NM_001347832, intron 5 of 5) 17488 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 493-59 chr12 39569658 39569999 + 3 NA intron (NM_005164, intron 9 of 9) L1MA6|LINE|L1 49975 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 828-51 chr8 141697127 141697459 + 3 NA Intergenic Intergenic 89020 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 353-475 chr7 14630216 14630472 + 3 NA intron (NM_001350722, intron 13 of 25) intron (NM_001350722, intron 13 of 25) 211106 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 546-73 chr14 95177369 95177672 + 3 NA intron (NR_015415, intron 3 of 3) L1MA3|LINE|L1 -19510 NM_030621 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 618-48 chr18 55201653 55201990 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie -77515 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 487-227 chr5 42200294 42200538 + 3 NA Intergenic Intergenic -25071 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 454-265 chr5 167280926 167281095 + 3 NA intron (NM_001122679, intron 1 of 29) L1MD1|LINE|L1 -112609 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 498-98 chr16 63566835 63567071 + 3 NA Intergenic Intergenic -1530515 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 515-85 chr17 12270379 12270603 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 188592 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 648-34 chr13 79106801 79107062 + 3 NA Intergenic L1MC1|LINE|L1 -266881 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 611-34 chr13 91490989 91491284 + 3 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 92515 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 416-61 chr10 129436409 129436657 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -30708 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 460-297 chr8 132396089 132396311 + 3 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 51062 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 536-253 chr9 111539174 111539479 + 3 NA intron (NM_001007169, intron 5 of 5) L1M5|LINE|L1 14147 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 342-333 chr3 144630575 144630742 + 3 NA Intergenic Intergenic 657577 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 467-265 chr7 62680292 62680484 + 3 NA Intergenic ALR/Alpha|Satellite|centr 623668 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 682-93 chr6 86789726 86790003 + 3 NA Intergenic LTR86C|LTR|ERVL -147664 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 257-22 chr1 174443858 174444036 + 3 NA intron (NM_001366446, intron 13 of 25) L1MA4|LINE|L1 -4017 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 381-298 chr5 21037655 21037797 + 3 NA Intergenic Intergenic -421754 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 636-96 chr3 98883705 98884099 + 3 NA intron (NM_080927, intron 1 of 15) intron (NM_080927, intron 1 of 15) 17793 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 849-24 chr2 226339184 226339862 + 3 NA Intergenic L1MCa|LINE|L1 196729 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 920-14 chr16 34100610 34101129 + 3 NA Intergenic ALR/Alpha|Satellite|centr -62709 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 497-53 chr12 20735532 20735752 + 3 NA intron (NM_017435, intron 10 of 14) intron (NM_017435, intron 10 of 14) 40177 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 393-13 chr1 73445739 73446057 + 3 NA Intergenic Intergenic 139728 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 512-57 chr11 125795875 125796090 + 3 NA Intergenic L1MA2|LINE|L1 7855 NM_001129883 100169851 Hs.131278 NM_001129883 ENSG00000236027 PATE3 HEL-127|PATE-DJ prostate and testis expressed 3 protein-coding 632-7 chr1 177611805 177612164 + 3 NA Intergenic L3|LINE|CR1 -88540 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 555-55 chr14 58048627 58048981 + 3 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 103409 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 257-5 chr1 60474168 60474327 + 3 NA Intergenic MIRb|SINE|MIR 148438 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 433-122 chr19 22482066 22482275 + 3 NA intron (NR_160728, intron 1 of 1) L1PA17|LINE|L1 45779 NR_110427 101929124 Hs.589610 NR_110427 ENSG00000260599 LOC101929124 - uncharacterized LOC101929124 ncRNA 502-270 chr8 108521119 108521429 + 3 NA Intergenic L1MA10|LINE|L1 77650 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 665-56 chr22 43738294 43738756 + 3 NA intron (NM_198856, intron 4 of 29) (CA)n|Simple_repeat|Simple_repeat 73780 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 384-250 chr4 32915828 32916020 + 3 NA Intergenic MIRb|SINE|MIR 564886 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 831-39 chr5 60035105 60035583 + 3 NA intron (NM_001349243, intron 2 of 16) MIRb|SINE|MIR -141618 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 862-14 chr14 68617713 68618268 + 3 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 10797 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 263-384 chr7 19280691 19280843 + 3 NA Intergenic L1ME3Cz|LINE|L1 -135346 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 286-124 chr14 65658403 65658542 + 3 NA intron (NM_004480, intron 5 of 9) L1MD2|LINE|L1 187370 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 632-99 chr5 117741312 117741722 + 3 NA intron (NR_104997, intron 1 of 2) AluJr|SINE|Alu 11156 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 667-9 chr1 233851447 233851845 + 3 NA Intergenic Intergenic -53030 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 520-45 chr10 126709701 126710000 + 3 NA Intergenic Intergenic -39340 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 694-4 chr1 108108355 108108818 + 3 NA Intergenic MER34A1|LTR|ERV1 84249 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 881-12 chr16 48700845 48701498 + 3 NA Intergenic L1PA16|LINE|L1 -90991 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 650-30 chr14 68470921 68471370 + 3 NA 3' UTR (NM_001321819, exon 11 of 11) 3' UTR (NM_001321819, exon 11 of 11) 157642 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 427-237 chr7 9472392 9472575 + 3 NA Intergenic Intergenic -161787 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 604-77 chr2 28966706 28967062 + 3 NA Intergenic Intergenic -14414 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 577-101 chr2 187702900 187703104 + 3 NA Intergenic L1PA15-16|LINE|L1 -148497 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 296-283 chr3 3552417 3552540 + 3 NA Intergenic Intergenic -246953 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 548-120 chr2 124513691 124513907 + 3 NA intron (NM_130773, intron 8 of 23) intron (NM_130773, intron 8 of 23) 488512 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 771-12 chr10 123593102 123593595 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -73007 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 401-274 chr5 164598100 164598260 + 3 NA Intergenic L1MEi|LINE|L1 127901 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 388-76 chr12 37969506 37969704 + 3 NA Intergenic ALR/Alpha|Satellite|centr -347169 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 588-144 chr7 47530851 47531222 + 3 NA intron (NM_022748, intron 1 of 30) L1MEc|LINE|L1 51075 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 1078-3 chr17 70017275 70017887 + 3 NA Intergenic Intergenic -33690 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 488-106 chr17 55597309 55597568 + 3 NA Intergenic L1MB2|LINE|L1 125426 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 769-24 chr19 44322495 44322842 + 3 NA Intergenic L1MA4|LINE|L1 -17643 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 268-444 chrX 64893244 64893375 + 3 NA Intergenic Intergenic 83141 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 423-40 chr10 117115466 117115714 + 3 NA intron (NM_001258300, intron 1 of 17) intron (NM_001258300, intron 1 of 17) 10996 NM_001258300 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 420-279 chr8 43817901 43818170 + 3 NA Intergenic ALR/Alpha|Satellite|centr 525593 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 400-57 chr11 81722135 81722309 + 3 NA Intergenic L1MA3|LINE|L1 168614 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 548-62 chr13 47376178 47376470 + 3 NA Intergenic L1MB7|LINE|L1 -479248 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 453-238 chr6 155939555 155939791 + 3 NA Intergenic Intergenic -7124 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 397-104 chr15 71085503 71085694 + 3 NA Intergenic Intergenic -55851 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 823-10 chr12 124108065 124108537 + 3 NA intron (NM_001347902, intron 2 of 4) MER63C|DNA|hAT-Blackjack 135086 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 266-264 chr3 145226684 145226799 + 3 NA Intergenic L1ME2|LINE|L1 842444 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 464-257 chr8 90531637 90531958 + 3 NA Intergenic L5|LINE|RTE-X 74266 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 416-197 chr2 241199046 241199311 + 3 NA intron (NM_001370694, intron 4 of 24) intron (NM_001370694, intron 4 of 24) 10501 NM_001370694 50636 Hs.163909 NM_001001666 ENSG00000146205 ANO7 D-TMPP|DTMPP|IPCA-5|IPCA5|NGEP|PCANAP5|PCANAP5L|TMEM16G anoctamin 7 protein-coding 466-260 chr8 28045124 28045447 + 3 NA intron (NM_001010906, intron 12 of 18) L3b|LINE|CR1 38651 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 517-280 chr8 130534114 130534306 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -90536 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 610-44 chr13 93173280 93173599 + 3 NA Intergenic L1PA15|LINE|L1 -53368 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 619-87 chr3 37917953 37918299 + 3 NA intron (NM_001008392, intron 1 of 7) intron (NM_001008392, intron 1 of 7) -51278 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 445-42 chr11 133463392 133463606 + 3 NA intron (NM_001012393, intron 1 of 7) L1M5|LINE|L1 69002 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 352-435 chr5 153309964 153310122 + 3 NA Intergenic Intergenic -180481 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 370-307 chr3 39758505 39758703 + 3 NA Intergenic Intergenic -50310 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 453-28 chr10 81608333 81608543 + 3 NA Intergenic Intergenic -266756 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 487-220 chr5 4095185 4095541 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 499531 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 491-39 chr11 99882611 99882930 + 3 NA intron (NM_001243270, intron 5 of 23) L1MA2|LINE|L1 326625 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 503-221 chr5 5010148 5010394 + 3 NA Intergenic Intergenic -24088 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 433-177 chr3 109473347 109473558 + 3 NA intron (NR_109841, intron 3 of 4) L1PA15|LINE|L1 63462 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 560-29 chr11 114696567 114696825 + 3 NA intron (NM_182495, intron 2 of 5) L1MD2|LINE|L1 18169 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 476-187 chr3 187977103 187977286 + 3 NA promoter-TSS (NR_135538) promoter-TSS (NR_135538) -787 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 443-34 chr10 12524890 12525114 + 3 NA intron (NM_001351032, intron 3 of 11) L1MEf|LINE|L1 -53751 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 507-193 chr5 19357230 19357554 + 3 NA Intergenic LTR16C|LTR|ERVL 528880 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 520-116 chr17 31648296 31648549 + 3 NA Intergenic Intergenic 73011 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 718-68 chr5 28190559 28190969 + 3 NA Intergenic Intergenic 96901 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 751-19 chr14 62421741 62422220 + 3 NA Intergenic Intergenic -282007 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 409-125 chr19 49777910 49778125 + 3 NA intron (NM_130787, intron 1 of 22) intron (NM_130787, intron 1 of 22) 11016 NM_014203 160 Hs.467125 NM_014203 ENSG00000196961 AP2A1 ADTAA|AP2-ALPHA|CLAPA1 adaptor related protein complex 2 subunit alpha 1 protein-coding 407-144 chr2 108280128 108280333 + 3 NA Intergenic Intergenic -8665 NM_001056 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 823-23 chr4 66844938 66845454 + 3 NA Intergenic Intergenic 568372 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 906-9 chr10 128412841 128413485 + 3 NA Intergenic MIR3|SINE|MIR 127213 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 733-21 chr16 83013610 83014115 + 3 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) -23564 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 722-49 chr22 22990701 22991214 + 3 NA Intergenic Intergenic -79562 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 534-5 chr1 56165321 56165576 + 3 NA Intergenic L1PREC2|LINE|L1 220361 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 582-63 chr19 52143407 52143678 + 3 NA Intergenic Intergenic -3604 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 776-11 chr11 80889504 80890020 + 3 NA Intergenic MER33|DNA|hAT-Charlie -126959 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 419-263 chr6 161465859 161466053 + 3 NA intron (NM_004562, intron 9 of 11) L1MA9|LINE|L1 -5021 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 497-286 chr8 111292805 111293076 + 3 NA Intergenic Intergenic -56737 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 623-129 chr8 105461172 105461487 + 3 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 141786 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 895-4 chr1 233497515 233498095 + 3 NA Intergenic LTR35B|LTR|ERV1 -116301 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 809-38 chr5 13532799 13533214 + 3 NA Intergenic Intergenic 411474 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 381-373 chr8 19382608 19382806 + 3 NA intron (NM_001363110, intron 7 of 8) L1MB3|LINE|L1 68731 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 575-129 chr3 185235273 185235625 + 3 NA exon (NM_001966, exon 3 of 7) exon (NM_001966, exon 3 of 7) 17823 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 464-165 chr3 88742065 88742347 + 3 NA Intergenic Intergenic -365415 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 875-14 chr17 52100300 52100696 + 3 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 58216 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 333-521 chr6 166050388 166050566 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -47243 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 612-143 chr8 113968033 113968431 + 3 NA Intergenic Intergenic -531293 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 440-7 chr1 95423836 95424068 + 3 NA Intergenic Intergenic -50785 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 588-31 chr13 32899229 32899567 + 3 NA intron (NR_047020, intron 3 of 4) Kanga2_a|DNA|TcMar-Tc2 12254 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 432-197 chr4 55237726 55237933 + 3 NA Intergenic L1MA7|LINE|L1 -108413 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 815-7 chr10 33153424 33153789 + 3 NA Intergenic Intergenic -36799 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 753-25 chr16 68579532 68579904 + 3 NA Intergenic L1ME1|LINE|L1 40427 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 414-65 chr12 33506341 33506616 + 3 NA Intergenic Tigger4a|DNA|TcMar-Tigger -66659 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 410-317 chr8 133947839 133948041 + 3 NA Intergenic Intergenic 61444 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 453-290 chr8 125760420 125760671 + 3 NA Intergenic MIRc|SINE|MIR 190652 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 444-257 chr8 83166495 83166670 + 3 NA Intergenic Intergenic -237176 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 362-36 chr1 214919604 214919759 + 3 NA Intergenic Intergenic -85861 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 538-65 chr14 42784591 42784908 + 3 NA Intergenic L1M5|LINE|L1 1177893 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 513-300 chrX 51130448 51130701 + 3 NA intron (NR_110382, intron 1 of 8) L1PA17|LINE|L1 40847 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 348-273 chr21 18367126 18367287 + 3 NA intron (NM_002772, intron 6 of 24) intron (NM_002772, intron 6 of 24) 36579 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 182-85 chr2 73298892 73298994 + 3 NA Intergenic L1ME4b|LINE|L1 -5395 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 438-276 chr8 92853482 92853712 + 3 NA Intergenic L1MB1|LINE|L1 -67537 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 719-5 chr1 176455046 176455451 + 3 NA Intergenic L1M5|LINE|L1 -7927 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 711-47 chr3 95095894 95096327 + 3 NA Intergenic L1MEg|LINE|L1 157847 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 286-235 chr2 218172248 218172351 + 3 NA Intergenic L1ME4a|LINE|L1 -5337 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 398-357 chr8 88120025 88120232 + 3 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 207355 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 402-20 chr1 225120902 225121175 + 3 NA intron (NM_001367479, intron 26 of 85) L1MC|LINE|L1 191363 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 804-29 chr2 18469290 18469935 + 3 NA Intergenic MIRb|SINE|MIR 91041 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 679-84 chr5 7154288 7154623 + 3 NA Intergenic L1PA15-16|LINE|L1 114899 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 449-165 chr3 70363007 70363256 + 3 NA Intergenic Intergenic -50493 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 559-104 chr2 173716822 173717031 + 3 NA Intergenic Intergenic 246954 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 436-313 chr8 120698095 120698386 + 3 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -63013 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 524-222 chr6 46886545 46886833 + 3 NA intron (NM_001098518, intron 4 of 20) intron (NM_001098518, intron 4 of 20) -16782 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 373-190 chr2 46892997 46893138 + 3 NA Intergenic Intergenic 22739 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 947-29 chr8 84033627 84034380 + 3 NA Intergenic Intergenic -148784 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 478-226 chr4 173499203 173499389 + 3 NA intron (NM_001329597, intron 1 of 3) intron (NM_001329597, intron 1 of 3) 19942 NM_001329597 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 848-11 chr13 83582544 83583004 + 3 NA Intergenic L1MD1|LINE|L1 299619 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 311-143 chr14 69695123 69695258 + 3 NA intron (NM_014734, intron 2 of 5) intron (NM_014734, intron 2 of 5) -71952 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 450-129 chr2 6617784 6617996 + 3 NA Intergenic Intergenic 15897 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 751-38 chr2 230788701 230789109 + 3 NA intron (NM_001130850, intron 2 of 8) L1MEc|LINE|L1 -75280 NM_001287240 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 611-130 chr6 78356593 78356906 + 3 NA Intergenic L2a|LINE|L2 182560 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 720-63 chr4 103621068 103621425 + 3 NA intron (NM_001059, intron 3 of 4) intron (NM_001059, intron 3 of 4) 98739 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 470-239 chr6 65544725 65544912 + 3 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 34986 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 979-15 chr4 102769888 102770366 + 3 NA Intergenic L1PA17|LINE|L1 -6910 NR_125932 102723704 Hs.638374 NR_125932 LOC102723704 - uncharacterized LOC102723704 ncRNA 494-273 chr7 88652293 88652484 + 3 NA Intergenic L1MA3|LINE|L1 -107312 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 490-220 chr5 74522376 74522622 + 3 NA intron (NR_126354, intron 1 of 2) AluSz6|SINE|Alu 14477 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 502-147 chr2 136283549 136283794 + 3 NA Intergenic Intergenic -165516 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 401-261 chr5 78606161 78606363 + 3 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 42510 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 128-73 chr7 137204231 137204296 + 3 NA Intergenic Intergenic -39922 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 491-133 chr2 161655665 161655951 + 3 NA intron (NM_001354451, intron 1 of 25) L1M3|LINE|L1 31392 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 441-276 chr9 86590934 86591234 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -236674 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 236-151 chr18 74914975 74915133 + 3 NA intron (NM_017757, intron 6 of 7) intron (NM_017757, intron 6 of 7) 284091 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 506-96 chr15 57960862 57961156 + 3 NA intron (NM_170696, intron 10 of 11) intron (NM_170696, intron 10 of 11) 53014 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 535-215 chr6 40083321 40083652 + 3 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -149024 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 623-91 chr4 46760719 46761167 + 3 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 148302 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 219-309 chr6 50554822 50554931 + 3 NA Intergenic Intergenic -158668 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 440-109 chr19 52252317 52252539 + 3 NA Intergenic MER49|LTR|ERV1 -17159 NM_001010851 90321 Hs.439662 NM_001010851 ENSG00000196214 ZNF766 - zinc finger protein 766 protein-coding 292-380 chr6 50003364 50003512 + 3 NA Intergenic Intergenic 18543 NM_001037728 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 510-13 chr1 163792436 163792627 + 3 NA Intergenic AluJr|SINE|Alu -369340 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 252-329 chr5 44927953 44928066 + 3 NA Intergenic Intergenic 119062 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 223-37 chr10 71115138 71115268 + 3 NA Intergenic L1MEc|LINE|L1 -97367 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 330-513 chr8 70996436 70996631 + 3 NA Intergenic Intergenic 327194 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 472-82 chr14 45282724 45283058 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -29689 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 370-348 chr4 67032565 67032794 + 3 NA Intergenic Intergenic 389321 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 373-95 chr12 108029277 108029549 + 3 NA Intergenic Intergenic -99875 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 878-10 chr12 1461681 1462194 + 3 NA intron (NR_027948, intron 19 of 19) (AC)n|Simple_repeat|Simple_repeat -38554 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 542-125 chr21 41577917 41578182 + 3 NA Intergenic Intergenic -69891 NM_005656 7113 Hs.439309 NM_005656 ENSG00000184012 TMPRSS2 PP9284|PRSS10 transmembrane serine protease 2 protein-coding 248-105 chr14 28550988 28551124 + 3 NA Intergenic Intergenic 214263 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 1022-13 chr19 31821277 31821715 + 3 NA Intergenic Intergenic -204366 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 608-14 chr10 77368532 77368900 + 3 NA intron (NR_126365, intron 3 of 5) L1ME1|LINE|L1 17844 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 555-197 chr8 43667655 43668001 + 3 NA Intergenic ALR/Alpha|Satellite|centr 375386 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 544-222 chr8 54831923 54832236 + 3 NA Intergenic L1MEf|LINE|L1 215983 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 687-111 chr7 79385979 79386453 + 3 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -66741 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 434-129 chr2 6752401 6752616 + 3 NA intron (NR_038369, intron 1 of 5) intron (NR_038369, intron 1 of 5) 17803 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 416-154 chr19 24377503 24377701 + 3 NA Intergenic ALR/Alpha|Satellite|centr -214155 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 388-181 chr20 19263688 19263851 + 3 NA intron (NR_024564, intron 4 of 7) intron (NR_024564, intron 4 of 7) 20827 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 746-50 chr3 96083935 96084328 + 3 NA Intergenic MER57A-int|LTR|ERV1 -275833 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 806-51 chr8 117250836 117251389 + 3 NA Intergenic Intergenic 116117 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 667-111 chr8 68482783 68483026 + 3 NA intron (NR_146186, intron 4 of 12) intron (NR_146186, intron 4 of 12) -151413 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 525-53 chr12 20707624 20707938 + 3 NA intron (NM_017435, intron 4 of 14) intron (NM_017435, intron 4 of 14) 12316 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 437-48 chr12 17043950 17044179 + 3 NA Intergenic L1MEg|LINE|L1 55317 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 504-49 chr12 13588699 13588975 + 3 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -212092 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 328-609 chr9 95322001 95322198 + 3 NA Intergenic Intergenic -4390 NM_001243744 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 316-378 chr3 197311068 197311234 + 3 NA Intergenic Intergenic -11830 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 758-6 chr10 20129357 20129734 + 3 NA intron (NM_032812, intron 4 of 13) L1MA9|LINE|L1 313113 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 911-20 chr4 68094854 68095309 + 3 NA intron (NM_207407, intron 2 of 9) intron (NM_207407, intron 2 of 9) -31784 NR_027094 401135 Hs.130270 NM_001014372 SYT14P1 CHR415SYT|SYT14L|SYTDEP synaptotagmin 14 pseudogene 1 pseudo 712-29 chr15 45295515 45295915 + 3 NA Intergenic AluSp|SINE|Alu -16493 NR_120335 101928414 NR_120335 ENSG00000259520 LOC101928414 - uncharacterized LOC101928414 ncRNA 517-8 chr1 79348302 79348642 + 3 NA Intergenic Intergenic -341742 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 472-287 chr6 149102025 149102318 + 3 NA Intergenic L1PB4|LINE|L1 -69510 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 324-443 chr5 164385012 164385222 + 3 NA Intergenic Intergenic 82285 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 370-170 chr16 54782370 54782570 + 3 NA Intergenic L1PA8|LINE|L1 65763 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 522-17 chr10 41861607 41861947 + 3 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 506268 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 805-41 chr6 145445259 145445701 + 3 NA Intergenic L1M4|LINE|L1 241397 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 528-187 chr4 136817993 136818253 + 3 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -375633 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 1057-18 chr8 118216705 118217197 + 3 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -105132 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 735-34 chr18 67324673 67325021 + 3 NA Intergenic Intergenic -191699 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 554-214 chr9 94196509 94196789 + 3 NA intron (NR_160773, intron 2 of 2) L1PB3|LINE|L1 7917 NR_046165 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 564-60 chr15 37554889 37555109 + 3 NA Intergenic L1MEg|LINE|L1 -379608 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 289-378 chr5 101055026 101055157 + 3 NA Intergenic Intergenic -151809 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 930-19 chr20 58736792 58737264 + 3 NA Intergenic L1ME3A|LINE|L1 -36397 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 539-117 chr2 106916617 106916845 + 3 NA Intergenic HERVL-int|LTR|ERVL -29622 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 501-97 chr2 21681335 21681560 + 3 NA Intergenic L1MB3|LINE|L1 29205 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 734-63 chr5 146724126 146724425 + 3 NA intron (NM_001271899, intron 2 of 9) MIR|SINE|MIR 154510 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 477-70 chr12 11953161 11953418 + 3 NA Intergenic Intergenic -96572 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 684-42 chr16 86084439 86084867 + 3 NA Intergenic AluJb|SINE|Alu -111528 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 282-434 chr7 90801233 90801406 + 3 NA intron (NM_012395, intron 4 of 13) intron (NM_012395, intron 4 of 13) 91503 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 562-89 chr19 28513193 28513410 + 3 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -93387 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 516-90 chr16 7463761 7464007 + 3 NA intron (NM_145893, intron 1 of 13) MIRb|SINE|MIR 131039 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 817-49 chr7 86727112 86727570 + 3 NA intron (NM_001363522, intron 1 of 4) L2c|LINE|L2 83427 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 517-265 chr8 88434642 88434936 + 3 NA Intergenic L1M2|LINE|L1 -107306 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 561-164 chr5 67259714 67259948 + 3 NA Intergenic L2a|LINE|L2 -63032 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 503-223 chr5 11928353 11928673 + 3 NA Intergenic Intergenic -24067 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 398-79 chr12 75430141 75430384 + 3 NA intron (NR_072995, intron 5 of 6) intron (NR_072995, intron 5 of 6) 39173 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 326-51 chr1 230005417 230005624 + 3 NA intron (NR_135116, intron 1 of 1) intron (NR_135116, intron 1 of 1) 2803 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 490-235 chr6 19183670 19183948 + 3 NA Intergenic Intergenic -3329 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 413-220 chr4 73029764 73029932 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 39868 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 454-209 chr3 116323991 116324181 + 3 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -35938 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 527-279 chr8 144974361 144974587 + 3 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -20391 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 269-278 chr4 71352929 71353118 + 3 NA intron (NM_003759, intron 2 of 22) intron (NM_003759, intron 2 of 22) 13970 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 468-120 chr17 73778406 73778714 + 3 NA intron (NR_027146, intron 2 of 3) L2a|LINE|L2 -8262 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 510-7 chr1 84095537 84095765 + 3 NA intron (NM_002731, intron 1 of 9) L1ME3|LINE|L1 17572 NM_207578 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 461-96 chr16 47799479 47799813 + 3 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -58935 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 438-192 chr4 45129437 45129627 + 3 NA Intergenic L1MC5|LINE|L1 -402898 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 690-105 chr9 29791839 29792194 + 3 NA Intergenic Intergenic -578415 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 480-236 chr5 75944559 75944855 + 3 NA Intergenic L1MEf|LINE|L1 -138676 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 1018-15 chr2 66187877 66188442 + 3 NA Intergenic L1PA16|LINE|L1 170169 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 391-100 chr14 48500008 48500252 + 3 NA Intergenic Intergenic -705116 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 539-60 chr13 61879817 61880126 + 3 NA Intergenic Intergenic 149577 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 404-12 chr1 81728999 81729256 + 3 NA intron (NM_001297704, intron 1 of 20) (ATT)n|Simple_repeat|Simple_repeat 29357 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 492-46 chr11 106911976 106912254 + 3 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 106361 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 390-14 chr1 118763648 118763781 + 3 NA Intergenic L1MB1|LINE|L1 224629 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 538-124 chr2 125986148 125986352 + 3 NA Intergenic FAM|SINE|Alu 131735 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 761-50 chr4 75119443 75119799 + 3 NA Intergenic L1MA5|LINE|L1 -34913 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 868-2 chr10 107382045 107382700 + 3 NA Intergenic Intergenic -217666 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 255-332 chr5 73945499 73945604 + 3 NA Intergenic Intergenic 132005 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 648-26 chr12 39515848 39516326 + 3 NA Intergenic L1M1|LINE|L1 -72967 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 677-85 chr8 126603295 126603583 + 3 NA Intergenic Tigger16a|DNA|TcMar-Tigger -44961 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 318-438 chr5 46417061 46417248 + 3 NA Intergenic ALR/Alpha|Satellite|centr -720774 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 378-50 chr10 29087500 29087673 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR -201484 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 462-271 chr7 92759129 92759362 + 3 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 74714 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 505-40 chr10 117028480 117028800 + 3 NA intron (NM_001258300, intron 2 of 17) MSTA-int|LTR|ERVL-MaLR -23063 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 620-139 chr8 47153014 47153424 + 3 NA Intergenic L1PA6|LINE|L1 -36088 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 226-234 chr3 127210707 127210880 + 3 NA Intergenic Intergenic 17662 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 599-68 chr20 11578991 11579300 + 3 NA Intergenic MamGypLTR1b|LTR|Gypsy 291570 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 468-197 chr3 70877801 70878057 + 3 NA Intergenic MLT1N2|LTR|ERVL-MaLR 186995 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 504-19 chr1 236421188 236421396 + 3 NA intron (NM_080738, intron 3 of 5) LTR53|LTR|ERVL 25879 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 615-117 chr5 180225242 180225478 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -16149 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 541-37 chr11 115779806 115780230 + 3 NA Intergenic AluJo|SINE|Alu -19818 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 673-17 chr10 62718092 62718461 + 3 NA Intergenic L2a|LINE|L2 -86444 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 696-40 chr15 25145433 25145777 + 3 NA intron (NR_146177, intron 61 of 147) intron (NR_146177, intron 61 of 147) 9963 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 521-198 chr5 93834207 93834669 + 3 NA intron (NM_032042, intron 7 of 10) intron (NM_032042, intron 7 of 10) -92838 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 375-190 chr19 32506586 32506737 + 3 NA Intergenic L1MEc|LINE|L1 -74529 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 510-64 chr12 119327530 119327721 + 3 NA Intergenic Intergenic -7104 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 988-42 chr8 139565309 139565930 + 3 NA Intergenic MLT2B4|LTR|ERVL 137504 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 879-22 chr4 45059544 45059948 + 3 NA Intergenic L1ME2z|LINE|L1 -333112 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 707-96 chr7 54051179 54051755 + 3 NA Intergenic Intergenic -239536 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 519-165 chr4 108549748 108549984 + 3 NA intron (NR_026968, intron 2 of 3) AluJo|SINE|Alu -7367 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 487-3 chr1 5354686 5354905 + 3 NA Intergenic L1MEf|LINE|L1 507946 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 568-96 chr2 13742267 13742483 + 3 NA Intergenic MER4A1|LTR|ERV1 658583 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 663-107 chr7 53562520 53563000 + 3 NA Intergenic L1MA8|LINE|L1 249171 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 743-69 chr5 133377745 133378112 + 3 NA intron (NM_015082, intron 4 of 15) L1M4b|LINE|L1 49778 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 636-18 chr10 57203541 57203907 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 100835 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 513-235 chr5 176888219 176888638 + 3 NA exon (NM_002115, exon 10 of 19) exon (NM_002115, exon 10 of 19) 10918 NM_002115 3101 Hs.411695 NM_002115 ENSG00000160883 HK3 HKIII|HXK3 hexokinase 3 protein-coding 455-305 chrX 95569461 95569653 + 3 NA Intergenic L1MA2|LINE|L1 -506331 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 836-34 chr20 46523278 46523934 + 3 NA Intergenic L2a|LINE|L2 -10034 NM_001270497 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 503-74 chr12 87257337 87257595 + 3 NA Intergenic HSMAR1|DNA|TcMar-Mariner -73273 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 472-251 chr5 95301812 95302059 + 3 NA Intergenic Intergenic -17360 NM_024717 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 790-16 chr16 80096297 80096728 + 3 NA Intergenic Intergenic 301263 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 1671 chr1 58139947 58140943 + 3 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 110058 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 513-114 chr18 58305347 58305616 + 3 NA intron (NM_001144965, intron 5 of 30) intron (NM_001144965, intron 5 of 30) 83910 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 454-253 chr5 22811652 22811929 + 3 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 41554 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 407-276 chr6 54086278 54086490 + 3 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -25059 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 556-107 chr2 126350571 126350814 + 3 NA Intergenic L1ME2|LINE|L1 -232707 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 550-61 chr12 103527240 103527588 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -20380 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LINC02401 - long intergenic non-protein coding RNA 2401 ncRNA 688-110 chr8 139487992 139488477 + 3 NA Intergenic L1M5|LINE|L1 214889 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 269-30 chr1 217227137 217227274 + 3 NA Intergenic Intergenic -89503 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 476-251 chr7 12286789 12287059 + 3 NA Intergenic Intergenic 75630 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 939-3 chr1 76223446 76224006 + 3 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 148980 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 456-161 chr2 114415005 114415241 + 3 NA Intergenic Intergenic -27518 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 559-17 chr10 81758063 81758255 + 3 NA Intergenic L1M4|LINE|L1 -117035 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 487-225 chr5 23466397 23466635 + 3 NA Intergenic LTR8B|LTR|ERV1 -41093 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 898-25 chr4 57754029 57754474 + 3 NA Intergenic HAL1b|LINE|L1 328379 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 363-347 chr5 8701684 8701913 + 3 NA Intergenic Intergenic -137934 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 545-53 chr12 16307642 16307950 + 3 NA Intergenic Intergenic -30111 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 626-14 chr10 25958076 25958458 + 3 NA intron (NM_001368265, intron 4 of 7) L1PREC2|LINE|L1 24038 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 527-204 chr5 29396220 29396490 + 3 NA promoter-TSS (NR_104628) promoter-TSS (NR_104628) -379 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 556-116 chr2 214655544 214655792 + 3 NA Intergenic Tigger2a|DNA|TcMar-Tigger 145486 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 450-263 chr6 91127722 91128020 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -393789 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 701-90 chr8 4766838 4767239 + 3 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 227876 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 474-150 chr2 136965561 136965794 + 3 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 200132 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 700-49 chr2 83157093 83157478 + 3 NA Intergenic Intergenic 300482 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 486-29 chr10 41755829 41756067 + 3 NA Intergenic ALR/Alpha|Satellite|centr 612097 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 370-133 chr14 25569873 25570036 + 3 NA Intergenic L1MA2|LINE|L1 -519657 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 387-24 chr1 231198115 231198330 + 3 NA intron (NM_001300889, intron 4 of 11) L2c|LINE|L2 -10595 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 448-205 chr5 30334962 30335177 + 3 NA Intergenic Intergenic 454509 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1038-10 chr2 84373051 84373625 + 3 NA Intergenic Intergenic 82656 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 498-19 chr1 232350581 232350839 + 3 NA Intergenic L1MB7|LINE|L1 164898 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 303-413 chr7 8355620 8355785 + 3 NA Intergenic MIRb|SINE|MIR -77907 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 432-277 chr7 123893996 123894276 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -31105 NM_003117 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 588-10 chr10 39286100 39286394 + 3 NA Intergenic ALR/Alpha|Satellite|centr 589651 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 334-173 chr15 60492652 60492873 + 3 NA 3' UTR (NM_002943, exon 11 of 11) 3' UTR (NM_002943, exon 11 of 11) 13584 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 343-391 chr4 63228805 63229021 + 3 NA Intergenic Intergenic -1067148 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 344-452 chr7 32111316 32111534 + 3 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -39989 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 499-230 chr6 138650811 138651115 + 3 NA Intergenic Intergenic -40705 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 656-113 chr6 153902822 153903280 + 3 NA Intergenic L1MA2|LINE|L1 -107445 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 441-141 chr20 12099290 12099467 + 3 NA Intergenic L1PA16|LINE|L1 181485 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 623-88 chr3 182541761 182542021 + 3 NA Intergenic Intergenic -34767 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 643-46 chr18 13948589 13948969 + 3 NA Intergenic L1ME1|LINE|L1 -33072 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 513-134 chr2 106926095 106926305 + 3 NA Intergenic L1MCa|LINE|L1 -39091 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 575-106 chr21 20589089 20589429 + 3 NA Intergenic Intergenic 213849 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 545-30 chr10 99604887 99605177 + 3 NA Intergenic MLT2C1|LTR|ERVL 15407 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 494-153 chr20 49819619 49819857 + 3 NA intron (NR_048539, intron 2 of 13) L1MB5|LINE|L1 6910 NR_048538 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 616-135 chr5 78660342 78660769 + 3 NA Intergenic Intergenic -11783 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 548-135 chr20 45234133 45234398 + 3 NA Intergenic L1M2c|LINE|L1 12892 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 545-50 chr11 122520313 122520511 + 3 NA Intergenic L2c|LINE|L2 -97541 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 583-102 chr20 44632556 44632808 + 3 NA intron (NR_136160, intron 2 of 10) intron (NR_136160, intron 2 of 10) 19017 NM_000022 100 Hs.654536 NM_000022 ENSG00000196839 ADA - adenosine deaminase protein-coding 551-72 chr18 23174095 23174402 + 3 NA intron (NM_138375, intron 1 of 9) L1MB7|LINE|L1 18423 NM_138375 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 604-66 chr18 4806769 4807098 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -274249 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 532-98 chr18 3781129 3781353 + 3 NA intron (NM_001242762, intron 2 of 9) L1ME3G|LINE|L1 64117 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 228-304 chr6 147996023 147996121 + 3 NA Intergenic L1MEd|LINE|L1 -276256 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 503-153 chr2 115147995 115148183 + 3 NA intron (NR_036580, intron 1 of 2) intron (NR_036580, intron 1 of 2) 13254 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 486-131 chr2 30702397 30702712 + 3 NA Intergenic L1ME1|LINE|L1 104892 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 327-491 chr8 88399693 88399857 + 3 NA Intergenic AluJb|SINE|Alu -72292 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 439-78 chr12 129393931 129394146 + 3 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 185437 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 656-134 chr8 139245127 139245519 + 3 NA Intergenic AluSg7|SINE|Alu -331282 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 554-143 chr22 43529501 43529829 + 3 NA intron (NM_198856, intron 29 of 29) MLT1J|LTR|ERVL-MaLR 13411 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 641-25 chr12 2551005 2551436 + 3 NA intron (NM_199460, intron 10 of 49).2 intron (NM_199460, intron 10 of 49).2 121000 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 615-4 chr1 101424924 101425185 + 3 NA Intergenic L1PA12|LINE|L1 101217 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 702-45 chr2 82805098 82805472 + 3 NA Intergenic L1PA13|LINE|L1 -51518 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 317-228 chr2 78253466 78253644 + 3 NA intron (NR_110288, intron 1 of 3) MIR3|SINE|MIR 37176 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 647-4 chr1 82256374 82256790 + 3 NA Intergenic Intergenic 454129 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 537-97 chr19 31373243 31373665 + 3 NA Intergenic Intergenic -24018 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 263-417 chr8 83296216 83296366 + 3 NA Intergenic Intergenic -107467 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 478-136 chr2 49427682 49427882 + 3 NA Intergenic Intergenic -273255 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 659 chr1 76137068 76137479 + 3 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 62527 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 564-45 chr12 118542326 118542558 + 3 NA Intergenic AluSx|SINE|Alu 165887 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 606-22 chr10 83629321 83629619 + 3 NA Intergenic Intergenic 47619 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 427-86 chr16 8718081 8718301 + 3 NA intron (NM_000663, intron 1 of 15) MIRb|SINE|MIR -2522 NM_001127448 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 594-65 chr2 29592818 29593059 + 3 NA intron (NM_004304, intron 3 of 28) MLT1C|LTR|ERVL-MaLR -117561 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 512-117 chr2 47715891 47716172 + 3 NA Intergenic L1ME2|LINE|L1 -67051 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 362-76 chr10 105651925 105652098 + 3 NA Intergenic MIRc|SINE|MIR 168322 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 487-159 chr2 229640183 229640511 + 3 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 74208 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 504-188 chr4 67831424 67831687 + 3 NA intron (NM_004262, intron 7 of 9) intron (NM_004262, intron 7 of 9) 52447 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 460-62 chr12 37596761 37596962 + 3 NA Intergenic ALR/Alpha|Satellite|centr -719913 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 543-85 chr16 8432544 8432768 + 3 NA Intergenic MER49|LTR|ERV1 157182 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 1297-2 chr14 45336559 45337130 + 3 NA Intergenic L1M2|LINE|L1 -83642 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 714-49 chr3 104997877 104998213 + 3 NA Intergenic L1PA17|LINE|L1 -368668 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 470-205 chr5 5567376 5567649 + 3 NA Intergenic Intergenic 144835 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 743-31 chr18 61857695 61858103 + 3 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 35108 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 477-179 chr20 52833590 52833786 + 3 NA Intergenic Intergenic -138670 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 530-158 chr22 19294715 19294970 + 3 NA Intergenic AluJr4|SINE|Alu -3123 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 472-27 chr10 5992043 5992231 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -13396 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 343-588 chrX 33678143 33678263 + 3 NA Intergenic Intergenic -338815 NM_000109 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 476-203 chr4 176088568 176088895 + 3 NA intron (NM_181265, intron 1 of 28) intron (NM_181265, intron 1 of 28) 22890 NM_001350727 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 442-230 chr5 40560639 40560899 + 3 NA Intergenic Intergenic -119146 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 562-66 chr15 80281195 80281510 + 3 NA intron (NR_033833, intron 2 of 2) LTR64|LTR|ERV1 -29139 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 335-334 chr3 9624929 9625113 + 3 NA Intergenic L1MEg|LINE|L1 -24484 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 544-166 chr4 97746030 97746291 + 3 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 379234 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 818-31 chr21 10716100 10716583 + 3 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 194827 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 848-30 chr3 181954941 181955485 + 3 NA intron (NR_104146, intron 2 of 7) intron (NR_104146, intron 2 of 7) 2849 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 397-252 chr5 42270247 42270448 + 3 NA Intergenic Intergenic -95002 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 415-46 chr11 54927759 54927969 + 3 NA Intergenic ALR/Alpha|Satellite|centr 221032 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 433-18 chr1 244623535 244623727 + 3 NA intron (NM_001130957, intron 20 of 21) ERVL-E-int|LTR|ERVL -29417 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 462-176 chr3 53660131 53660406 + 3 NA exon (NM_000720, exon 5 of 49) exon (NM_000720, exon 5 of 49) 165657 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 348-440 chr6 2458315 2458566 + 3 NA Intergenic Intergenic -176060 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 215-217 chr4 34479864 34479970 + 3 NA Intergenic Intergenic -210170 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 589-146 chr7 21708175 21708537 + 3 NA intron (NM_001277115, intron 40 of 81) L2a|LINE|L2 165317 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 467-183 chr3 103916863 103917079 + 3 NA Intergenic L1MC3|LINE|L1 -392855 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 933-41 chr7 143948653 143949018 + 3 NA Intergenic L1MEf|LINE|L1 -11092 NM_012369 26211 Hs.553595 NM_012369 ENSG00000213215 OR2F1 7M1-2|OLF3|OR14-60|OR2F3|OR2F3P|OR2F4|OR2F5|OR7-139|OR7-140 olfactory receptor family 2 subfamily F member 1 (gene/pseudogene) protein-coding 397-224 chr4 66679363 66679574 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 402644 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 363-132 chr14 45474400 45474570 + 3 NA Intergenic L2a|LINE|L2 -221283 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 483-28 chr10 59294852 59295103 + 3 NA intron (NM_001347852, intron 5 of 12) intron (NM_001347852, intron 5 of 12) 67572 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 542-236 chr9 40913878 40914144 + 3 NA Intergenic CER|Satellite|Satellite 15081 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 472-312 chr8 72471225 72471437 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -65894 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 798-26 chr2 35170134 35170627 + 3 NA Intergenic LTR89|LTR|ERVL? -301025 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 936-5 chr10 43644875 43645521 + 3 NA promoter-TSS (NR_047558) promoter-TSS (NR_047558) -744 NR_047558 414208 Hs.608956 NR_047558 ENSG00000230565 ZNF32-AS2 ZNF32OS2|b402L1.7 ZNF32 antisense RNA 2 ncRNA 493-175 chr20 7031357 7031527 + 3 NA Intergenic Intergenic 222760 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 770-66 chr6 145377585 145378069 + 3 NA Intergenic MER61E|LTR|ERV1 309050 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 746-43 chr2 178773575 178773970 + 3 NA intron (NM_133379, intron 31 of 45) intron (NM_133379, intron 31 of 45) -3154 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 743-93 chr9 77581425 77581845 + 3 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 66687 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 568-184 chr7 56439946 56440237 + 3 NA intron (NR_029420, intron 1 of 5) AluSx|SINE|Alu 8284 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 330-210 chr17 55650840 55651027 + 3 NA Intergenic Intergenic 71931 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 471-31 chr10 76701903 76702073 + 3 NA Intergenic L1MC4|LINE|L1 -186056 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 431-142 chr2 114544537 114544738 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 83060 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 575-157 chr5 141285673 141285865 + 3 NA Intergenic L1ME3B|LINE|L1 18280 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 591-31 chr12 106662512 106662925 + 3 NA intron (NM_001206691, intron 4 of 17) L1MC1|LINE|L1 21982 NR_038912 100505978 Hs.662583 NR_038912 ENSG00000257711 LOC100505978 - uncharacterized LOC100505978 ncRNA 298-357 chr5 26691022 26691165 + 3 NA Intergenic Intergenic 347493 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 398-138 chr17 62112092 62112237 + 3 NA Intergenic Intergenic -46886 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 579-123 chr4 152152777 152153073 + 3 NA Intergenic Intergenic 52107 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 961-10 chr20 43812884 43813371 + 3 NA Intergenic AluSq2|SINE|Alu -81591 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 339-500 chr6 108505977 108506122 + 3 NA intron (NM_001323005, intron 10 of 11) intron (NM_001323005, intron 10 of 11) -53776 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 809-45 chr5 152986658 152987116 + 3 NA Intergenic Intergenic -14538 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 496-194 chr4 59596239 59596606 + 3 NA Intergenic L2a|LINE|L2 582849 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 785-32 chr21 30701143 30701597 + 3 NA Intergenic L1MB3|LINE|L1 17407 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 544-83 chr16 31751842 31752047 + 3 NA intron (NM_001130913, intron 3 of 4) L1P4|LINE|L1 38715 NM_001130913 124411 Hs.528826 NM_001004300 ENSG00000197302 ZNF720 - zinc finger protein 720 protein-coding 549-174 chr5 164795706 164795975 + 3 NA Intergenic Intergenic 325561 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 719-82 chr8 115264243 115264769 + 3 NA Intergenic Intergenic 403507 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 331-26 chr1 181664962 181665146 + 3 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 181537 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 707-50 chr2 76750736 76751143 + 3 NA intron (NR_146416, intron 1 of 1) MER112|DNA|hAT-Charlie -235026 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 639-98 chr5 113987908 113988264 + 3 NA Intergenic Intergenic -373984 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 378-163 chr16 66646402 66646575 + 3 NA intron (NM_181521, intron 1 of 3) L1ME4a|LINE|L1 41757 NR_037619 123920 Hs.298198 NM_144601 ENSG00000140931 CMTM3 BNAS2|CKLFSF3 CKLF like MARVEL transmembrane domain containing 3 protein-coding 444-148 chr3 7715786 7715959 + 3 NA intron (NM_181874, intron 10 of 10) intron (NM_181874, intron 10 of 10) -180588 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 533-116 chr20 7160985 7161233 + 3 NA intron (NR_110609, intron 5 of 7) intron (NR_110609, intron 5 of 7) 93093 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 713-48 chr20 52032976 52033416 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 72288 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 1007-6 chr2 169424305 169424931 + 3 NA Intergenic Intergenic -54876 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 506-30 chr10 17479876 17480054 + 3 NA Intergenic Intergenic -25370 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 624-75 chr20 42596144 42596415 + 3 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -89204 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 803-11 chr14 24622388 24622751 + 3 NA Intergenic L1PA8|LINE|L1 11621 NM_004131 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 1125-6 chr19 37133054 37133641 + 3 NA Intergenic Intergenic 39089 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 1180-5 chr14 82272455 82273244 + 3 NA Intergenic Tigger3c|DNA|TcMar-Tigger -369783 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 1197-7 chr3 121272917 121273638 + 3 NA intron (NM_001348343, intron 18 of 27) L1M4c|LINE|L1 223637 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 905-14 chr18 56204186 56204785 + 3 NA Intergenic Intergenic -13223 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 703-6 chr10 11584243 11584610 + 3 NA intron (NR_125732, intron 2 of 2) intron (NR_125732, intron 2 of 2) -26875 NR_160647 107984208 Hs.590986 NR_160647 LOC107984208 - uncharacterized LOC107984208 ncRNA 490-241 chr6 42991049 42991305 + 3 NA intron (NM_006245, intron 2 of 15) L2c|LINE|L2 6607 NM_001270476 5528 Hs.533308 NM_006245 ENSG00000112640 PPP2R5D B56D|B56delta|MRD35 protein phosphatase 2 regulatory subunit B'delta protein-coding 1406-4 chr8 87419333 87420090 + 3 NA Intergenic L1M5|LINE|L1 454304 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 409-266 chr6 139079888 139080046 + 3 NA Intergenic LTR67B|LTR|ERVL 51222 NM_021243 58527 Hs.600861 NM_021243 ENSG00000146386 ABRACL C6orf115|Costars|HSPC280|PRO2013 ABRA C-terminal like protein-coding 525-61 chr12 126528880 126529095 + 3 NA Intergenic Intergenic -79660 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 509-14 chr1 193740983 193741207 + 3 NA Intergenic Intergenic 436350 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 436-213 chr4 90851188 90851415 + 3 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 616270 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 442-190 chr3 103960250 103960502 + 3 NA Intergenic Intergenic -436260 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 333-349 chr3 70365369 70365525 + 3 NA Intergenic L1MC3|LINE|L1 -52809 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 530-33 chr10 96803321 96803650 + 3 NA Intergenic L1MEd|LINE|L1 25279 NR_030338 693192 NR_030338 ENSG00000207976 MIR607 MIRN607|hsa-mir-607 microRNA 607 ncRNA 542-104 chr2 133351375 133351713 + 3 NA intron (NM_207481, intron 3 of 17) MIRb|SINE|MIR 85349 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 942-6 chr10 81690796 81691246 + 3 NA Intergenic L1MD1|LINE|L1 -184173 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 806-34 chr20 13992609 13992918 + 3 NA intron (NM_001363752, intron 1 of 16) MLT1A|LTR|ERVL-MaLR -2149 NR_073206 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 528-195 chr5 7563610 7563833 + 3 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 167583 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 568-126 chr22 19647073 19647463 + 3 NA Intergenic L1M4|LINE|L1 -67235 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 376-106 chr14 61157572 61157746 + 3 NA Intergenic L1MC5a|LINE|L1 123679 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 507-45 chr11 6882089 6882375 + 3 NA Intergenic L2c|LINE|L2 5607 NM_207186 283297 Hs.448685 NM_207186 ENSG00000170782 OR10A4 JCG5|OR10A4P olfactory receptor family 10 subfamily A member 4 protein-coding 745-55 chr5 156302873 156303307 + 3 NA Intergenic L1MA3|LINE|L1 -23667 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 624-87 chr4 52124696 52125105 + 3 NA Intergenic L1MEc|LINE|L1 73596 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 459-8 chr1 62582668 62583006 + 3 NA intron (NM_001367561, intron 16 of 49) intron (NM_001367561, intron 16 of 49) -14683 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 279-126 chr16 59462024 59462182 + 3 NA Intergenic L1MEd|LINE|L1 293088 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 439-176 chr3 21819539 21819766 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -68442 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 481-14 chr1 214830672 214830895 + 3 NA Intergenic Intergenic -174759 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 501-27 chr10 69611309 69611641 + 3 NA Intergenic L1MC3|LINE|L1 -18772 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 322-131 chr12 86772435 86772618 + 3 NA intron (NM_001351286, intron 1 of 7) intron (NM_001351286, intron 1 of 7) -27377 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 529-108 chr2 109118001 109118270 + 3 NA Intergenic MLT1G1|LTR|ERVL-MaLR -11070 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 345-388 chr4 72749683 72749853 + 3 NA Intergenic Intergenic -180547 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 418-149 chr3 16185049 16185222 + 3 NA intron (NM_001319051, intron 1 of 9) L2b|LINE|L2 10455 NM_001319051 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 344-226 chr2 14829739 14829936 + 3 NA Intergenic Intergenic 197120 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 342-550 chr9 32529069 32529259 + 3 NA Intergenic L1ME2|LINE|L1 -2968 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 419-293 chr8 90369034 90369211 + 3 NA intron (NR_051989, intron 3 of 3) intron (NR_051989, intron 3 of 3) 147634 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 504-182 chr4 28333406 28333689 + 3 NA Intergenic Intergenic -486035 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 523-3 chr1 48268370 48268636 + 3 NA Intergenic Intergenic 45787 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 568-93 chr19 51838575 51838908 + 3 NA intron (NR_163433, intron 9 of 11) intron (NR_163433, intron 9 of 11) 43584 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 980-18 chr8 105307069 105307662 + 3 NA Intergenic Intergenic -11073 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 706-33 chr17 31649197 31649644 + 3 NA Intergenic Intergenic 74009 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 440-142 chr21 17104106 17104280 + 3 NA Intergenic Intergenic -334697 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 502-252 chr8 24169826 24170011 + 3 NA Intergenic L2a|LINE|L2 -124122 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 419-124 chr18 32442429 32442712 + 3 NA intron (NM_001242409, intron 1 of 5) intron (NM_001242409, intron 1 of 5) 28312 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 596-114 chr21 21512787 21513100 + 3 NA intron (NM_001352592, intron 17 of 18) L1MA4|LINE|L1 224376 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 675-78 chr6 38502701 38503199 + 3 NA intron (NM_001172418, intron 5 of 10) L2c|LINE|L2 21354 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 527-285 chr9 119071799 119072088 + 3 NA Intergenic MIR|SINE|MIR 297492 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 589-38 chr16 65677832 65678182 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -101707 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 538-249 chr8 144977453 144977642 + 3 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -17318 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 538-88 chr17 62863421 62863653 + 3 NA Intergenic Intergenic 55035 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 607-78 chr2 111064098 111064568 + 3 NA intron (NM_001371254, intron 17 of 18) AluYk4|SINE|Alu 51255 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 779-38 chr3 34920239 34920634 + 3 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 473587 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 337-538 chr8 86295572 86295716 + 3 NA Intergenic L1MD2|LINE|L1 -46903 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 510-149 chr2 99813603 99813923 + 3 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 291820 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 524-33 chr10 85067275 85067606 + 3 NA Intergenic L1MA10|LINE|L1 131465 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 469-4 chr1 42009077 42009298 + 3 NA intron (NR_038261, intron 1 of 3) L1M6B|LINE|L1 26747 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 380-262 chr3 175443874 175444039 + 3 NA intron (NM_207015, intron 5 of 13) L2b|LINE|L2 74416 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 427-150 chr3 2319910 2320265 + 3 NA intron (NM_001206955, intron 1 of 23) MIR3|SINE|MIR 81258 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 682-21 chr11 109341258 109341587 + 3 NA Intergenic AluJr|SINE|Alu -80768 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 216-196 chr20 39203359 39203438 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR 21350 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 682-60 chr22 28490308 28490597 + 3 NA intron (NM_001145418, intron 2 of 22) MLT1I|LTR|ERVL-MaLR 30583 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 547-176 chr5 30088125 30088372 + 3 NA Intergenic Intergenic 207688 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 332-321 chr3 43513834 43514025 + 3 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) 107997 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 1467-6 chr3 173524637 173525425 + 3 NA intron (NM_014932, intron 2 of 6) L1PB4|LINE|L1 -59403 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 817-51 chr8 50706781 50707095 + 3 NA intron (NR_135797, intron 18 of 20) intron (NR_135797, intron 18 of 20) 542807 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 586-125 chr5 125578460 125578837 + 3 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 85387 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 517-207 chr5 13705223 13705571 + 3 NA intron (NM_001369, intron 76 of 78) L1MA8|LINE|L1 239083 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 633-38 chr14 33772334 33772700 + 3 NA intron (NM_001165893, intron 6 of 10) intron (NM_001165893, intron 6 of 10) 63580 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 754-7 chr10 62974717 62975035 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -155709 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 568-189 chr7 158967304 158967638 + 3 NA Intergenic L1MEg|LINE|L1 -40883 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 520-26 chr1 241035968 241036247 + 3 NA intron (NM_001350116, intron 3 of 16) intron (NM_001350116, intron 3 of 16) -96165 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 423-57 chr12 19191070 19191329 + 3 NA intron (NM_019012, intron 3 of 25) MER112|DNA|hAT-Charlie -14126 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 566-128 chr3 110787787 110788092 + 3 NA Intergenic L1PA15|LINE|L1 282020 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 541-218 chr7 51351439 51351822 + 3 NA Intergenic Intergenic -34769 NM_001346444 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 441-76 chr14 50689729 50689965 + 3 NA Intergenic L1MC4a|LINE|L1 -21541 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 332-470 chr7 9697688 9697891 + 3 NA Intergenic Intergenic 63519 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 289-242 chr2 132872816 132872979 + 3 NA intron (NM_207481, intron 9 of 17) intron (NM_207481, intron 9 of 17) -42660 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 308-237 chr2 107498952 107499088 + 3 NA Intergenic Intergenic -30399 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 694-56 chr18 21771466 21771735 + 3 NA intron (NM_020774, intron 3 of 20) L1ME3E|LINE|L1 30271 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 961-12 chr3 76705933 76706332 + 3 NA Intergenic Intergenic -333967 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 743-49 chr21 15405847 15406241 + 3 NA Intergenic Intergenic -323890 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 200-223 chr5 107025084 107025233 + 3 NA Intergenic Intergenic -14144 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 727-10 chr10 63774393 63774777 + 3 NA Intergenic L1MB4|LINE|L1 -252695 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 551-19 chr10 59748116 59748308 + 3 NA intron (NM_001304732, intron 1 of 3) intron (NM_001304732, intron 1 of 3) 5243 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 400-27 chr1 235670202 235670360 + 3 NA intron (NM_000081, intron 50 of 52) LTR10B2|LTR|ERV1 -19527 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 402-159 chr2 115457117 115457321 + 3 NA intron (NM_001321912, intron 4 of 25) L1MB8|LINE|L1 113404 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 483-88 chr17 12262011 12262344 + 3 NA Intergenic Intergenic 180278 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 254-441 chr9 80846080 80846202 + 3 NA Intergenic LTR50|LTR|ERVL 843394 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 456-310 chr8 52383987 52384183 + 3 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) 25671 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 477-177 chr20 29712211 29712385 + 3 NA Intergenic ALR/Alpha|Satellite|centr 163579 NR_133643 105379478 Hs.98121 NR_133643 FAM242B - family with sequence similarity 242 member B ncRNA 286-27 chr1 233266162 233266344 + 3 NA intron (NM_014801, intron 1 of 33) FLAM_A|SINE|Alu 29472 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 329-538 chr7 53254464 53254598 + 3 NA Intergenic Intergenic 218898 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 376-22 chr1 189145291 189145452 + 3 NA Intergenic L1MA6|LINE|L1 1330639 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 834-30 chr3 111234809 111235244 + 3 NA Intergenic MER4D0|LTR|ERV1 163210 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 412-237 chr4 76330575 76330848 + 3 NA intron (NM_001042784, intron 20 of 23) MER2|DNA|TcMar-Tigger 24685 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 657-2 chr1 45338191 45338508 + 3 NA intron (NM_012222, intron 1 of 15) L2b|LINE|L2 1608 NM_001048174 4595 Hs.271353 NM_012222 ENSG00000132781 MUTYH MYH mutY DNA glycosylase protein-coding 428-6 chr1 115207848 115208107 + 3 NA Intergenic L1ME3C|LINE|L1 -75057 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 566-186 chr7 110960720 110960934 + 3 NA intron (NM_032549, intron 4 of 5) L1ME1|LINE|L1 -130179 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 543-130 chr2 125639384 125639594 + 3 NA Intergenic Intergenic 478496 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 813-19 chr2 57789360 57789809 + 3 NA Intergenic L1MA1|LINE|L1 -118067 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 333-109 chr12 13427438 13427662 + 3 NA Intergenic Intergenic -50805 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 863-33 chr4 129338102 129338516 + 3 NA Intergenic L2a|LINE|L2 242157 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 363-68 chr10 123407386 123407609 + 3 NA Intergenic L1MB7|LINE|L1 253095 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 490-226 chr5 117277216 117277496 + 3 NA Intergenic MIR|SINE|MIR -138156 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 811-13 chr12 102647843 102648444 + 3 NA Intergenic Intergenic -167580 NM_001111285 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 621-24 chr12 21102639 21103132 + 3 NA Intergenic L1PA17|LINE|L1 -28309 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 782-10 chr11 79312083 79312594 + 3 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 89771 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 421-85 chr14 70649064 70649226 + 3 NA intron (NM_015351, intron 1 of 2) intron (NM_015351, intron 1 of 2) 7229 NM_015351 23508 Hs.79170 NM_015351 ENSG00000133985 TTC9 TTC9A tetratricopeptide repeat domain 9 protein-coding 453-218 chr5 169398062 169398344 + 3 NA Intergenic L1ME3B|LINE|L1 -97064 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 306-373 chr4 171297015 171297180 + 3 NA Intergenic MER31-int|LTR|ERV1 110913 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 939-25 chr7 23658719 23659192 + 3 NA Intergenic LTR10G|LTR|ERV1 -21244 NM_199136 340277 Hs.592178 NM_199136 ENSG00000188732 FAM221A C7orf46 family with sequence similarity 221 member A protein-coding 525-186 chr4 187397778 187398003 + 3 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 27242 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 489-172 chr3 22515391 22515572 + 3 NA Intergenic L1MA2|LINE|L1 558342 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 377-277 chr3 185140327 185140565 + 3 NA intron (NM_001025266, intron 1 of 1) L1MD1|LINE|L1 12614 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 525-179 chr4 101664183 101664508 + 3 NA Intergenic Intergenic -126262 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 398-306 chr6 130268279 130268480 + 3 NA intron (NM_001258275, intron 2 of 13) Tigger3|DNA|TcMar-Tigger -45428 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 624-46 chr16 6728561 6728934 + 3 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -45062 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 658-90 chr4 72889591 72889932 + 3 NA Intergenic Intergenic 179955 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 494-106 chr18 33891545 33891790 + 3 NA intron (NM_001198548, intron 7 of 8) intron (NM_001198548, intron 7 of 8) 156945 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 961-23 chr8 124975008 124975517 + 3 NA intron (NM_152412, intron 1 of 2) intron (NM_152412, intron 1 of 2) 1967 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 408-349 chr8 137398533 137398712 + 3 NA Intergenic L1MC1|LINE|L1 14966 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 640-129 chr8 3637183 3637588 + 3 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -908934 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 502-161 chr21 21348216 21348517 + 3 NA intron (NM_001352592, intron 9 of 18) L1MA1|LINE|L1 201204 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 403-306 chr8 80209813 80210083 + 3 NA Intergenic AluJb|SINE|Alu -31441 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 387-73 chr12 15298656 15298878 + 3 NA Intergenic L1MA3|LINE|L1 -23741 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 572-107 chr3 40131759 40132090 + 3 NA intron (NM_001284426, intron 1 of 14) intron (NM_001284426, intron 1 of 14) 31913 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 418-234 chr6 50108131 50108298 + 3 NA Intergenic HAL1M8|LINE|L1 -58285 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 314-152 chr13 74907180 74907325 + 3 NA Intergenic LTR1B1|LTR|ERV1 333129 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 481-40 chr10 77320343 77320527 + 3 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 30326 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 831-14 chr16 31897424 31897769 + 3 NA intron (NR_049749, intron 4 of 4) L1M4c|LINE|L1 23789 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 448-184 chr4 66876338 66876582 + 3 NA Intergenic Intergenic 545540 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 582-54 chr17 71542961 71543309 + 3 NA Intergenic Intergenic -340956 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 325-49 chr10 13075431 13075637 + 3 NA intron (NM_001282658, intron 3 of 6) intron (NM_001282658, intron 3 of 6) 24455 NM_001282658 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 1084-24 chr6 12350146 12350883 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 60153 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 589-109 chr4 75537419 75537793 + 3 NA intron (NR_133920, intron 2 of 4) THE1B|LTR|ERVL-MaLR -18442 NM_001257072 152816 Hs.24510 NM_178497 ENSG00000174792 ODAPH AI2A4|C4orf26 odontogenesis associated phosphoprotein protein-coding 492-44 chr11 88207592 88207887 + 3 NA Intergenic Intergenic 31237 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 709-54 chr3 96223356 96223754 + 3 NA Intergenic Intergenic -136409 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 515-116 chr2 84615447 84615746 + 3 NA intron (NM_001370, intron 22 of 76) L1PB1|LINE|L1 99141 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 485-191 chr3 149690464 149690769 + 3 NA intron (NM_001348362, intron 3 of 9) L1MA3|LINE|L1 12657 NM_001168278 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 487-107 chr16 52757956 52758272 + 3 NA Intergenic Intergenic -151139 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 346-128 chr14 29838489 29838696 + 3 NA intron (NM_001330069, intron 1 of 18) L1M5|LINE|L1 88504 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 385-407 chr9 73476697 73476848 + 3 NA Intergenic Intergenic 324907 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 401-189 chr20 53090998 53091183 + 3 NA intron (NM_173485, intron 1 of 2) MER113A|DNA|hAT-Charlie -94193 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 545-65 chr13 81976949 81977205 + 3 NA Intergenic Intergenic -750094 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 373-99 chr13 34410454 34410620 + 3 NA intron (NR_146542, intron 1 of 3) intron (NR_146542, intron 1 of 3) 62494 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 344-420 chr6 50747998 50748168 + 3 NA intron (NM_172238, intron 6 of 7) intron (NM_172238, intron 6 of 7) 34539 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 576-76 chr19 52636221 52636640 + 3 NA intron (NM_001348016, intron 1 of 3) intron (NM_001348016, intron 1 of 3) 1961 NM_001105550 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 390-108 chr14 78016084 78016242 + 3 NA Intergenic L2|LINE|L2 -154210 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 507-208 chr5 146566605 146566842 + 3 NA Intergenic L2a|LINE|L2 -50610 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 541-255 chr9 103896231 103896629 + 3 NA Intergenic Intergenic -103279 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 978-16 chr5 14886145 14886551 + 3 NA Intergenic L1MA8|LINE|L1 -14570 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 390-129 chr16 51068220 51068359 + 3 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 50531 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 532-9 chr1 172238819 172239040 + 3 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -94094 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 513-264 chr7 53984876 53985080 + 3 NA Intergenic Intergenic -173047 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 697-44 chr2 118406049 118406455 + 3 NA Intergenic L1M8|LINE|L1 196714 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 435-31 chr10 52142371 52142631 + 3 NA intron (NM_001098512, intron 8 of 17) intron (NM_001098512, intron 8 of 17) 171627 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 386-266 chr4 77477636 77477786 + 3 NA Intergenic L1PA17|LINE|L1 -34042 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 961 chr1 42371225 42371599 + 3 NA Intergenic Intergenic -9380 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 332-579 chr9 134595857 134596031 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -45861 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 490-69 chr12 44218522 44218737 + 3 NA intron (NM_001286213, intron 4 of 6) L1M3|LINE|L1 382548 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 473-37 chr10 107722185 107722499 + 3 NA Intergenic Intergenic 346951 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 294-395 chr5 163511945 163512091 + 3 NA exon (NM_182796, exon 2 of 7) exon (NM_182796, exon 2 of 7) 6399 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 366-93 chr12 15580399 15580568 + 3 NA intron (NM_030671, intron 9 of 13) intron (NM_030671, intron 9 of 13) 33872 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 874-18 chr3 97075836 97076194 + 3 NA intron (NM_001080448, intron 3 of 17) Tigger1|DNA|TcMar-Tigger 261421 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 575-77 chr19 15977156 15977545 + 3 NA Intergenic LTR9D|LTR|ERV1 28342 NM_001004465 126541 Hs.553579 NM_001004465 ENSG00000176231 OR10H4 OR19-28 olfactory receptor family 10 subfamily H member 4 protein-coding 468-131 chr19 56662696 56662937 + 3 NA 3' UTR (NM_001005850, exon 2 of 2) 3' UTR (NM_001005850, exon 2 of 2) 8941 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 204-275 chr7 92973209 92973288 + 3 NA Intergenic Intergenic -136621 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 425-105 chr16 61693474 61693662 + 3 NA intron (NM_001796, intron 10 of 11) intron (NM_001796, intron 10 of 11) 342870 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 567-129 chr4 66035770 66036098 + 3 NA Intergenic Intergenic -240890 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 385-326 chr6 48304041 48304341 + 3 NA Intergenic Intergenic -235502 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 437-275 chr8 92324741 92324930 + 3 NA Intergenic L1ME3B|LINE|L1 -221450 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 442-249 chr6 47426775 47426974 + 3 NA Intergenic LTR8B|LTR|ERV1 -50915 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 511-69 chr14 86144742 86145015 + 3 NA Intergenic Intergenic 210200 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 876-11 chr12 130231184 130231641 + 3 NA Intergenic L1MC5|LINE|L1 68953 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 703-61 chr3 194894750 194895127 + 3 NA Intergenic HAL1|LINE|L1 -126229 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 561-29 chr10 116218598 116218797 + 3 NA intron (NM_005264, intron 4 of 10) intron (NM_005264, intron 4 of 10) -23908 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 531-81 chr16 76432590 76432904 + 3 NA intron (NR_136213, intron 4 of 23) intron (NR_136213, intron 4 of 23) 122895 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 427-225 chr6 76665632 76665805 + 3 NA Intergenic Intergenic -72095 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 536-70 chr14 43175191 43175520 + 3 NA Intergenic Intergenic 1331928 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 671-9 chr1 188883831 188884324 + 3 NA Intergenic L1MC4|LINE|L1 1440449 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 493-241 chr5 59095828 59096058 + 3 NA intron (NM_001364603, intron 5 of 15) intron (NM_001364603, intron 5 of 15) -56467 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 777-78 chrX 94986378 94986781 + 3 NA Intergenic L1PB3|LINE|L1 76647 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 362-346 chr5 38231152 38231279 + 3 NA Intergenic L1ME4b|LINE|L1 -27344 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 777-25 chr14 86759042 86759449 + 3 NA Intergenic L1MD2|LINE|L1 -146533 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 721-12 chr11 114932004 114932561 + 3 NA Intergenic L1PREC2|LINE|L1 253755 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 448-141 chr20 61714188 61714418 + 3 NA intron (NM_001252339, intron 1 of 14) AluY|SINE|Alu 5445 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 504-12 chr1 182931639 182931906 + 3 NA intron (NM_030933, intron 5 of 9) L1MC1|LINE|L1 21394 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 314-81 chr10 126620776 126620997 + 3 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) 49624 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 382-129 chr16 54015850 54015998 + 3 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -23469 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 529-122 chr2 204278143 204278528 + 3 NA Intergenic MIRb|SINE|MIR -267140 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 680-121 chr8 142191895 142192261 + 3 NA Intergenic Intergenic -6278 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 480-19 chr10 10839774 10839941 + 3 NA intron (NM_001326327, intron 1 of 14) L1MC3|LINE|L1 41132 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 675-23 chr12 132919596 132920015 + 3 NA 3' UTR (NM_183238, exon 5 of 5) 3' UTR (NM_183238, exon 5 of 5) 31963 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 634-109 chr4 32213653 32213967 + 3 NA Intergenic MIRb|SINE|MIR -137228 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 897-25 chr20 39538998 39539592 + 3 NA Intergenic Intergenic -314547 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 894-22 chr20 12461975 12462432 + 3 NA Intergenic L2a|LINE|L2 474760 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 366-291 chr3 179560410 179560626 + 3 NA Intergenic Intergenic -2362 NM_177989 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 357-410 chr7 39729269 39729467 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -4200 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 327-324 chr3 38206259 38206402 + 3 NA intron (NM_005109, intron 4 of 17) intron (NM_005109, intron 4 of 17) 40793 NM_005109 9943 Hs.475970 NM_005109 ENSG00000172939 OXSR1 OSR1 oxidative stress responsive kinase 1 protein-coding 1090-8 chr5 8352344 8352971 + 3 NA intron (NR_039984, intron 3 of 5) L1MEc|LINE|L1 104907 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 662-5 chr1 114987466 114987826 + 3 NA intron (NR_104211, intron 31 of 32) AluJr4|SINE|Alu -42178 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 363-414 chr7 51997034 51997189 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -603855 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 582-52 chr17 32843879 32844234 + 3 NA intron (NM_015194, intron 1 of 21) intron (NM_015194, intron 1 of 21) 33068 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 517-297 chrX 10583213 10583490 + 3 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -6434 NM_001193277 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 524-91 chr17 64705715 64705934 + 3 NA Intergenic L2a|LINE|L2 -43517 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 731-55 chr4 112133870 112134270 + 3 NA Intergenic Tigger15a|DNA|TcMar-Tigger -11384 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 356-66 chr10 108875982 108876115 + 3 NA Intergenic Intergenic -806755 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 1062 chr1 233562748 233563329 + 3 NA Intergenic L1MA5|LINE|L1 -51068 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 632-60 chr2 152287321 152287670 + 3 NA Intergenic Intergenic -47679 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 433-82 chr14 71758740 71758908 + 3 NA Intergenic MER96|DNA|hAT-Tip100 172526 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 361-307 chr3 151566200 151566396 + 3 NA promoter-TSS (NR_049818) promoter-TSS (NR_049818) -303 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 502-128 chr2 6729290 6729525 + 3 NA non-coding (NR_038369, exon 6 of 6) non-coding (NR_038369, exon 6 of 6) 40904 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 670-131 chr8 132334050 132334408 + 3 NA intron (NM_004519, intron 1 of 14) AluSz|SINE|Alu 113033 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 454-237 chr4 89520968 89521134 + 3 NA Intergenic MIR|SINE|MIR -213251 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 595-157 chr8 46504560 46504829 + 3 NA Intergenic ALR/Alpha|Satellite|centr 112949 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 375-238 chr20 31235708 31235896 + 3 NA Intergenic Intergenic -21862 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 696-112 chr8 130703768 130704159 + 3 NA Intergenic Intergenic -260289 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 473-294 chr9 82864729 82864925 + 3 NA Intergenic Intergenic 198315 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 650-15 chr11 112862144 112862500 + 3 NA Intergenic L1MEi|LINE|L1 -99098 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 643-128 chr8 83062601 83062970 + 3 NA Intergenic LTR24B|LTR|ERV1 150681 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 201-144 chr22 35086924 35087063 + 3 NA 3' UTR (NM_001303508, exon 5 of 5) 3' UTR (NM_001303508, exon 5 of 5) 20835 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 348-191 chr17 73964438 73964584 + 3 NA Intergenic L1M4a1|LINE|L1 -135974 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 626-130 chr7 106350389 106350683 + 3 NA Intergenic MLT1E|LTR|ERVL-MaLR -65553 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 561-168 chr5 114553913 114554195 + 3 NA intron (NR_130785, intron 3 of 12) L1PA13|LINE|L1 -21987 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 1376-7 chr8 99055011 99055760 + 3 NA intron (NM_017890, intron 3 of 61) L1MB2|LINE|L1 42119 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 436-338 chrX 78373588 78373829 + 3 NA Intergenic Intergenic -46017 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 647-51 chr2 127609804 127610394 + 3 NA intron (NM_001080527, intron 24 of 46) intron (NM_001080527, intron 24 of 46) -35765 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 835-25 chr2 14845641 14846080 + 3 NA Intergenic L1MA3|LINE|L1 213143 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 627-102 chr6 64994680 64995145 + 3 NA intron (NM_001292009, intron 14 of 43) MER77|LTR|ERVL -306506 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 365-289 chr4 59163980 59164113 + 3 NA Intergenic L1PA16|LINE|L1 150473 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 587-5 chr1 74249434 74249738 + 3 NA intron (NM_015978, intron 3 of 24) intron (NM_015978, intron 3 of 24) 14199 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 448-222 chr5 119956892 119957115 + 3 NA Intergenic Intergenic 327444 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 392-248 chr5 35255182 35255398 + 3 NA Intergenic Intergenic -24803 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 954-26 chr2 79341873 79342489 + 3 NA Intergenic Intergenic 158663 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 240-241 chr2 161330226 161330335 + 3 NA intron (NM_005805, intron 3 of 11) intron (NM_005805, intron 3 of 11) 21855 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 413-206 chr4 25015934 25016107 + 3 NA intron (NM_018176, intron 6 of 7) intron (NM_018176, intron 6 of 7) 14926 NM_018176 55203 Hs.12488 NM_018176 ENSG00000153012 LGI2 LGIL2 leucine rich repeat LGI family member 2 protein-coding 357-438 chr8 82361855 82362102 + 3 NA Intergenic Intergenic -519692 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 540-45 chr11 115798881 115799063 + 3 NA Intergenic Intergenic -38772 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 339-427 chr4 141537862 141538046 + 3 NA Intergenic L1MB1|LINE|L1 -98629 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 498-184 chr4 14379045 14379236 + 3 NA Intergenic MLT1A1|LTR|ERVL-MaLR 267172 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 246-144 chr16 74020695 74020802 + 3 NA Intergenic Intergenic 194773 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 469-167 chr22 33485388 33485609 + 3 NA intron (NM_133642, intron 6 of 14) L1ME4a|LINE|L1 -48829 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 587-181 chrX 102530618 102530881 + 3 NA Intergenic L1MCa|LINE|L1 -14010 NM_021992 11013 Hs.56145 NM_021992 ENSG00000158164 TMSB15A TMSB15|TMSB15B|TMSL8|TMSNB|Tb15|TbNB thymosin beta 15a protein-coding 731-25 chr13 74863387 74863837 + 3 NA Intergenic L2|LINE|L2 310769 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 515-31 chr11 10098068 10098405 + 3 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 195971 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 551-193 chr7 56530928 56531237 + 3 NA Intergenic L1MC2|LINE|L1 7048 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 432-80 chr14 62790685 62790867 + 3 NA intron (NM_139318, intron 9 of 10) L1MA9|LINE|L1 254682 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 520-133 chr18 78677241 78677586 + 3 NA Intergenic Intergenic -302862 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 490-140 chr2 58484746 58485071 + 3 NA Intergenic MIR|SINE|MIR -35845 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 272-162 chr18 8172731 8172878 + 3 NA intron (NM_002845, intron 14 of 30) intron (NM_002845, intron 14 of 30) 194230 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 486-257 chr6 52208974 52209205 + 3 NA Intergenic Intergenic 22714 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 283-112 chr12 131191430 131191599 + 3 NA intron (NR_026670, intron 1 of 4) MamRep137|DNA|TcMar-Tigger 26503 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 473-148 chr2 187627170 187627329 + 3 NA Intergenic (TTCTTC)n|Simple_repeat|Simple_repeat -72744 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 846-22 chr2 59825068 59825560 + 3 NA Intergenic Intergenic 557722 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 457-202 chr5 82603343 82603544 + 3 NA Intergenic L1MCa|LINE|L1 -236712 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 517-95 chr16 77325829 77326060 + 3 NA exon (NM_001326358, exon 13 of 23) exon (NM_001326358, exon 13 of 23) 109090 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 1017-14 chr3 1203149 1203616 + 3 NA intron (NM_001289080, intron 2 of 22) intron (NM_001289080, intron 2 of 22) 110358 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 840-25 chr2 67664494 67665119 + 3 NA Intergenic L2a|LINE|L2 160756 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 481-132 chr2 15587642 15587850 + 3 NA Intergenic Intergenic -4122 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 650-120 chr7 71392859 71393180 + 3 NA intron (NM_022479, intron 3 of 10) L1MD|LINE|L1 -85249 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 381-283 chr4 114096221 114096484 + 3 NA Intergenic Intergenic -116705 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 494-293 chr8 117646245 117646494 + 3 NA Intergenic X7A_LINE|LINE|CR1 125656 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 462-292 chr9 11407237 11407532 + 3 NA Intergenic Intergenic 794178 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 834-7 chr12 78268984 78269577 + 3 NA Intergenic L1ME3C|LINE|L1 90466 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 543-65 chr12 84346781 84347176 + 3 NA Intergenic L1PA16|LINE|L1 565821 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 504-29 chr10 83293582 83293816 + 3 NA Intergenic L1MB8|LINE|L1 383390 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 850-3 chr1 238189104 238189660 + 3 NA Intergenic Intergenic 296635 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 1088-7 chr3 67234196 67234731 + 3 NA Intergenic Intergenic 8999 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 716-59 chr5 13099746 13100038 + 3 NA Intergenic Intergenic -67006 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 378-363 chr6 14251893 14252054 + 3 NA Intergenic Intergenic 33481 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 526-208 chr5 158484765 158484977 + 3 NA Intergenic Intergenic -75098 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 517-206 chr5 4959852 4960185 + 3 NA Intergenic MER31A|LTR|ERV1 -74341 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 561-56 chr13 53564343 53564632 + 3 NA Intergenic L1ME1|LINE|L1 -250932 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 690-19 chr11 98538942 98539338 + 3 NA Intergenic Intergenic -481809 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 397-342 chr8 114513980 114514171 + 3 NA Intergenic L1MA5|LINE|L1 -1077136 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 648-32 chr13 22435280 22435630 + 3 NA Intergenic Intergenic 225170 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 661-91 chr8 79012222 79012682 + 3 NA Intergenic L1MA2|LINE|L1 174923 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 492-180 chr3 121386109 121386373 + 3 NA intron (NM_001348343, intron 23 of 27) L1PB4|LINE|L1 159747 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 405-231 chr4 83222095 83222313 + 3 NA Intergenic MER74A|LTR|ERVL 62591 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 489-230 chr6 122600293 122600548 + 3 NA intron (NM_181794, intron 3 of 6) MLT2A1|LTR|ERVL -9812 NM_032471 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 480-302 chr8 129096308 129096666 + 3 NA Intergenic Intergenic -130486 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 526-90 chr16 64811876 64812166 + 3 NA Intergenic Intergenic 310042 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 638-25 chr11 57051039 57051284 + 3 NA Intergenic L1MEc|LINE|L1 13627 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 1037-3 chr11 112991313 112992089 + 3 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -28241 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 461-61 chr12 34419632 34419822 + 3 NA Intergenic ALR/Alpha|Satellite|centr 397231 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 366-249 chr20 12545619 12545864 + 3 NA Intergenic L1M3e|LINE|L1 391222 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 638-171 chr9 85296756 85297104 + 3 NA Intergenic L3|LINE|CR1 445099 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 484-237 chr6 62665220 62665525 + 3 NA Intergenic Intergenic -379145 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 683-42 chr20 53013798 53014180 + 3 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 41631 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 251-136 chr18 7433162 7433251 + 3 NA Intergenic L1MC4a|LINE|L1 27800 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 412-150 chr2 27861242 27861471 + 3 NA intron (NM_022128, intron 1 of 7) intron (NM_022128, intron 1 of 7) -27353 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 791-39 chr2 125901296 125901646 + 3 NA Intergenic L1MEc|LINE|L1 216514 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 294-261 chr20 44787295 44787464 + 3 NA intron (NM_001205317, intron 1 of 5) MIRb|SINE|MIR 23167 NM_182970 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 321-392 chr3 157514907 157515087 + 3 NA Intergenic L1ME3Cz|LINE|L1 -11392 NM_001167915 79674 Hs.658046 NM_024621 ENSG00000197415 VEPH1 MELT|VEPH ventricular zone expressed PH domain containing 1 protein-coding 800-3 chr1 72452158 72452581 + 3 NA Intergenic L1MA4|LINE|L1 -169830 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 600-112 chr6 163047911 163048187 + 3 NA intron (NR_110871, intron 2 of 3) L1MEd|LINE|L1 6112 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 759-32 chr19 32301212 32301596 + 3 NA Intergenic AluSg4|SINE|Alu -44206 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 456-79 chr13 75577463 75577643 + 3 NA intron (NM_006002, intron 6 of 8) intron (NM_006002, intron 6 of 8) 27803 NM_006002 7347 Hs.162241 NM_006002 ENSG00000118939 UCHL3 UCH-L3 ubiquitin C-terminal hydrolase L3 protein-coding 626-94 chr3 111354488 111354813 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -187547 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 253-251 chr3 40030312 40030466 + 3 NA intron (NM_001284424, intron 2 of 15) L1MB7|LINE|L1 -69622 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 223-377 chrX 64765368 64765493 + 3 NA Intergenic L1ME3Cz|LINE|L1 211020 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 496-252 chr7 9111529 9111806 + 3 NA Intergenic L1M1|LINE|L1 -522603 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 541-128 chr2 149157980 149158198 + 3 NA intron (NM_001317004, intron 3 of 6) intron (NM_001317004, intron 3 of 6) 39915 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 413-86 chr14 75072682 75072873 + 3 NA intron (NM_024643, intron 2 of 2) (TTTAGTG)n|Simple_repeat|Simple_repeat 3136 NM_001330191 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 485-13 chr1 170871118 170871452 + 3 NA Intergenic Intergenic -64186 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 344-248 chr2 116850020 116850202 + 3 NA Intergenic Intergenic -964580 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 647-81 chr5 46054232 46054618 + 3 NA Intergenic ALR/Alpha|Satellite|centr -358045 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 349-357 chr3 194157528 194157675 + 3 NA Intergenic Intergenic 21453 NM_005524 3280 Hs.250666 NM_005524 ENSG00000114315 HES1 HES-1|HHL|HRY|bHLHb39 hes family bHLH transcription factor 1 protein-coding 372-393 chr5 29575513 29575685 + 3 NA Intergenic Intergenic -179623 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 912-3 chr1 59734848 59735410 + 3 NA intron (NM_001350790, intron 15 of 16) intron (NM_001350790, intron 15 of 16) -1833 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 542-135 chr3 88415136 88415408 + 3 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 76816 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 681-50 chr3 126794966 126795323 + 3 NA intron (NM_032343, intron 4 of 7) intron (NM_032343, intron 4 of 7) 90904 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 382-149 chr17 70006593 70006757 + 3 NA Intergenic Intergenic -44596 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 528-113 chr18 64434089 64434401 + 3 NA Intergenic L1M4|LINE|L1 -174190 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 804-68 chr8 77372732 77373187 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -77738 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 935-6 chr11 24559848 24560314 + 3 NA intron (NM_001252008, intron 1 of 11) L1PA7|LINE|L1 63028 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 692-107 chr9 25430655 25431158 + 3 NA Intergenic L1PA13|LINE|L1 247952 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 435-100 chr17 11820380 11820557 + 3 NA intron (NM_001372, intron 45 of 68) L1ME4b|LINE|L1 -62434 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 524-291 chrX 85631237 85631626 + 3 NA Intergenic L2b|LINE|L2 -204349 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 1282-2 chr12 63432483 63433375 + 3 NA Intergenic Intergenic 235564 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 394-164 chr2 55189029 55189258 + 3 NA intron (NR_148539, intron 1 of 3) L1MEf|LINE|L1 -42760 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 467-206 chr4 72609366 72609643 + 3 NA Intergenic HSMAR2|DNA|TcMar-Mariner -40283 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 327-161 chr14_GL000225v1_random 60729 60937 + 3 NA NA BSR/Beta|Satellite|Satellite NA NA 643-18 chr11 109159418 109159742 + 3 NA Intergenic THE1A-int|LTR|ERVL-MaLR -262610 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 353-440 chr6 40926930 40927118 + 3 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 96256 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 421-324 chr9 123281010 123281186 + 3 NA Intergenic Intergenic -12512 NM_001171137 55342 Hs.287659 NM_018387 ENSG00000165209 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding 557-43 chr12 25545565 25545886 + 3 NA intron (NM_152590, intron 3 of 8) intron (NM_152590, intron 3 of 8) 7558 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 339-543 chr7 110622591 110622836 + 3 NA Intergenic Intergenic -468293 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 159-29 chr14 48242278 48242352 + 3 NA Intergenic Intergenic -447301 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 453-84 chr16 50471747 50472051 + 3 NA Intergenic L1MB3|LINE|L1 -76497 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 623-97 chr4 155302004 155302253 + 3 NA Intergenic Intergenic -52088 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 291-310 chr4 30028187 30028317 + 3 NA Intergenic Intergenic -692117 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 645-127 chr8 130705556 130706007 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -262107 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 566-24 chr11 71209461 71209704 + 3 NA intron (NM_012309, intron 1 of 24) intron (NM_012309, intron 1 of 24) 15214 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 423-141 chr2 136529041 136529287 + 3 NA Intergenic L2a|LINE|L2 -236381 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 753-15 chr12 30678323 30678912 + 3 NA intron (NM_006390, intron 5 of 24) intron (NM_006390, intron 5 of 24) -1373 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 816-2 chr10 57065700 57066162 + 3 NA Intergenic L1MCa|LINE|L1 238628 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 436-154 chr2 229904343 229904603 + 3 NA intron (NM_001348335, intron 1 of 5) intron (NM_001348335, intron 1 of 5) 17206 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 699-12 chr10 130363169 130363641 + 3 NA Intergenic Intergenic 226996 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 482-213 chr5 160457531 160457731 + 3 NA Intergenic MIR|SINE|MIR -10620 NR_132748 107075116 Hs.735831 NR_132748 ENSG00000253522 MIR3142HG - MIR3142 host gene ncRNA 894-40 chr6 54747092 54747513 + 3 NA Intergenic Intergenic -99469 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 521-142 chr20 17253357 17253673 + 3 NA intron (NM_001201529, intron 1 of 10) L1MB7|LINE|L1 26475 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 430-32 chr10 66063564 66063827 + 3 NA intron (NM_001127384, intron 15 of 17) L1MEd|LINE|L1 492270 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 524-44 chr12 8479041 8479275 + 3 NA TTS (NM_001317999) TTS (NM_001317999) 23196 NM_001317999 93978 Hs.591147 NM_001007033 ENSG00000205846 CLEC6A CLEC4N|CLECSF10|dectin-2 C-type lectin domain containing 6A protein-coding 1946 chr7 94838487 94839700 + 3 NA Intergenic L1MB3|LINE|L1 -68501 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 532-83 chr15 86811451 86811826 + 3 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -121242 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 202-68 chr14 46708522 46708607 + 3 NA Intergenic Intergenic -56783 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 408-262 chr5 27268998 27269147 + 3 NA Intergenic Intergenic -203220 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 209-277 chr6 120817630 120817745 + 3 NA Intergenic Intergenic 516793 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 367-105 chr12 133196886 133197093 + 3 NA intron (NM_152943, intron 6 of 6) intron (NM_152943, intron 6 of 6) 15494 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 402-341 chr8 82278966 82279155 + 3 NA Intergenic L1MA1|LINE|L1 -436774 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 421-254 chr6 19314869 19315070 + 3 NA Intergenic Intergenic -134489 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 926-22 chr3 177771987 177772456 + 3 NA Intergenic Intergenic -44644 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 628-28 chr10 101449365 101449757 + 3 NA intron (NM_001256856, intron 2 of 13) intron (NM_001256856, intron 2 of 13) 95396 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 175-166 chr8 91215518 91215637 + 3 NA intron (NM_001282356, intron 1 of 19) intron (NM_001282356, intron 1 of 19) 6081 NM_001282357 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 387-191 chr2 200070840 200070996 + 3 NA Intergenic MIR|SINE|MIR -115427 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 753-45 chr4 98190936 98191330 + 3 NA Intergenic L1MEg|LINE|L1 -47657 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 850-45 chr7 36939431 36939944 + 3 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -20255 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 495-115 chr2 132989478 132989797 + 3 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 74080 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 583-42 chr12 28797572 28797954 + 3 NA Intergenic Intergenic -351515 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 557-19 chr10 52009013 52009237 + 3 NA intron (NM_001098512, intron 5 of 17) L1PA14|LINE|L1 305003 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 934-25 chr5 56026087 56026495 + 3 NA Intergenic AluY|SINE|Alu 31124 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 455-55 chr11 110510654 110510862 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR 80810 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 728-27 chr13 104135185 104135624 + 3 NA Intergenic L1ME4a|LINE|L1 710204 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 563-190 chr9 11390077 11390405 + 3 NA Intergenic Intergenic 777035 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 413-287 chr7 157534602 157534782 + 3 NA Intergenic MER31-int|LTR|ERV1 39730 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 298-32 chr1 245070264 245070488 + 3 NA intron (NM_032328, intron 4 of 7) L1M4|LINE|L1 -84609 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 342-425 chr5 129309845 129310005 + 3 NA Intergenic Intergenic 87222 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 450-329 chrX 46306350 46306689 + 3 NA Intergenic Intergenic 21155 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 387-108 chr14 68309952 68310175 + 3 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 318724 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 309-222 chr18 76137262 76137440 + 3 NA intron (NR_040034, intron 4 of 5) intron (NR_040034, intron 4 of 5) 14353 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 538-175 chr4 67856853 67857201 + 3 NA intron (NM_004262, intron 2 of 9) L1MA4A|LINE|L1 26975 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 563-30 chr11 36843649 36843958 + 3 NA Intergenic Intergenic -245524 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 1000-14 chr20 46493656 46494185 + 3 NA Intergenic AluSx|SINE|Alu 19652 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 519-74 chr16 59740337 59740576 + 3 NA Intergenic Intergenic 14735 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 395-262 chr5 8355251 8355416 + 3 NA intron (NR_039984, intron 3 of 5) intron (NR_039984, intron 3 of 5) 102231 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 313-131 chr13 99972287 99972435 + 3 NA promoter-TSS (NM_033132) promoter-TSS (NM_033132) -452 NR_146224 85416 Hs.508570 NM_033132 ENSG00000139800 ZIC5 - Zic family member 5 protein-coding 371-94 chr13 64588091 64588223 + 3 NA Intergenic L1ME2|LINE|L1 -512146 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 599-60 chr2 89779385 89779707 + 3 NA Intergenic Intergenic -141639 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 784-24 chr17 73105154 73105600 + 3 NA Intergenic MER45C|DNA|hAT-Tip100 -12689 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 317-15 chr1 71965857 71966027 + 3 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -128930 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 297-307 chr3 158896573 158896743 + 3 NA Intergenic Intergenic 94604 NR_110328 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 475-244 chr6 123952736 123953007 + 3 NA intron (NM_001040214, intron 1 of 6) L1MA4A|LINE|L1 149006 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 696-25 chr11 115065536 115065962 + 3 NA Intergenic Intergenic -267828 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 300-472 chr8 88907606 88907756 + 3 NA Intergenic L1MA6|LINE|L1 -580198 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 478-282 chr8 36812719 36812963 + 3 NA intron (NM_001031836, intron 7 of 26) intron (NM_001031836, intron 7 of 26) 28467 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 533-99 chr2 62053659 62053952 + 3 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) -142310 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 596-63 chr14 88675244 88675547 + 3 NA intron (NM_183387, intron 21 of 42) THE1D-int|LTR|ERVL-MaLR 80975 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 381-224 chr20 11815722 11815869 + 3 NA intron (NR_110635, intron 1 of 1) MLT1G1|LTR|ERVL-MaLR 54920 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 452-39 chr11 21351666 21351833 + 3 NA intron (NM_201551, intron 14 of 18) L2a|LINE|L2 682163 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 638-119 chr5 39134113 39134683 + 3 NA intron (NM_001243093, intron 8 of 18) intron (NM_001243093, intron 8 of 18) -59999 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 389-237 chr3 102677317 102677501 + 3 NA Intergenic Intergenic 242394 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 430-30 chr10 54589031 54589275 + 3 NA intron (NR_134503, intron 2 of 5) intron (NR_134503, intron 2 of 5) 18804 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 834-46 chr7 82106912 82107424 + 3 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 97991 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 532-240 chr7 28427223 28427614 + 3 NA intron (NM_182898, intron 1 of 10) intron (NM_182898, intron 1 of 10) -8197 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 197-190 chr7 28767274 28767377 + 3 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 81192 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 625-61 chr20 46175714 46175943 + 3 NA intron (NM_021248, intron 11 of 11) MER5A|DNA|hAT-Charlie 57514 NR_136327 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 665-11 chr10 43766054 43766446 + 3 NA Intergenic L1PA16|LINE|L1 12575 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 1199-5 chr17 54529816 54530406 + 3 NA Intergenic Intergenic -370580 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 482-196 chr5 30254496 30254767 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 374071 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 579-155 chr7 34395017 34395306 + 3 NA intron (NR_033665, intron 3 of 3) ERV24_Prim-int|LTR|ERV1 -263057 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 666-16 chr11 50528737 50529183 + 3 NA Intergenic ALR/Alpha|Satellite|centr 119813 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 559-137 chr4 74393194 74393483 + 3 NA Intergenic Intergenic 28193 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 367-155 chr16 83101240 83101381 + 3 NA intron (NM_001220489, intron 3 of 12) (TA)n|Simple_repeat|Simple_repeat -111012 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 489-56 chr12 50274972 50275194 + 3 NA intron (NM_016357, intron 1 of 10) AluSz6|SINE|Alu 8437 NM_001113546 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 502-242 chr7 41483613 41483912 + 3 NA Intergenic L1MC|LINE|L1 -210157 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 561-102 chr2 122982423 122982748 + 3 NA Intergenic Intergenic 90896 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 400-219 chr3 83271232 83271414 + 3 NA Intergenic MIR|SINE|MIR 1285181 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 578-45 chr11 133207463 133207798 + 3 NA intron (NM_001012393, intron 1 of 7) MIR3|SINE|MIR -263862 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 465-307 chr8 137895233 137895559 + 3 NA intron (NR_161374, intron 2 of 7) L2|LINE|L2 188149 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 285-96 chr12 128448133 128448283 + 3 NA intron (NM_001136103, intron 2 of 8) MIR|SINE|MIR 154116 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 450-267 chr6 126246770 126246944 + 3 NA Intergenic HAL1ME|LINE|L1 -92932 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 533-15 chr10 39033103 39033438 + 3 NA Intergenic ALR/Alpha|Satellite|centr 336674 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 842-36 chr4 141923765 141924143 + 3 NA Intergenic Intergenic 287371 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 251-60 chr12 22250291 22250435 + 3 NA intron (NM_001304450, intron 2 of 3) MIR|SINE|MIR 84351 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 277-426 chr8 118391688 118391892 + 3 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -229211 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 849-48 chr8 119384494 119385048 + 3 NA Intergenic L1MA9|LINE|L1 -31675 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 404-57 chr11 2488230 2488393 + 3 NA intron (NM_181798, intron 1 of 15) L1MB2|LINE|L1 26857 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 896-10 chr14 72774812 72775175 + 3 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 117656 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 475-182 chr3 59972036 59972287 + 3 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 108748 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 523-63 chr12 28729533 28729828 + 3 NA Intergenic Intergenic -419598 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 439-208 chr4 74372400 74372648 + 3 NA intron (NM_001432, intron 1 of 4) intron (NM_001432, intron 1 of 4) 7379 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 448-242 chr6 71767775 71768008 + 3 NA Intergenic Intergenic -118812 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 683-47 chr21 44383383 44383905 + 3 NA intron (NM_003307, intron 9 of 31) L1MB3|LINE|L1 30043 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 356-172 chr16 9047840 9048003 + 3 NA Intergenic Intergenic -43723 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 630-24 chr13 29791359 29791617 + 3 NA intron (NM_007106, intron 1 of 4) intron (NM_007106, intron 1 of 4) 59129 NM_007106 5412 Hs.145575 NM_007106 ENSG00000122042 UBL3 HCG-1|PNSC1 ubiquitin like 3 protein-coding 351-375 chr5 28657338 28657510 + 3 NA Intergenic L2|LINE|L2 -269446 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 494-257 chr6 150477190 150477405 + 3 NA Intergenic L1PB4|LINE|L1 108285 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 409-72 chr14 52233621 52233778 + 3 NA Intergenic L4_B_Mam|LINE|RTE-X -33999 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 247-338 chr5 126165957 126166063 + 3 NA Intergenic Intergenic -13567 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 441-208 chr5 118870410 118870589 + 3 NA intron (NM_001308081, intron 4 of 5) Tigger1|DNA|TcMar-Tigger -104087 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 705-15 chr11 36113902 36114284 + 3 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -36192 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 300-98 chr12 133213039 133213197 + 3 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 22718 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 320-15 chr1 74483403 74483539 + 3 NA promoter-TSS (NM_001364665) promoter-TSS (NM_001364665) -31 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 518-101 chr16 47555284 47555577 + 3 NA intron (NM_001031835, intron 8 of 31) intron (NM_001031835, intron 8 of 31) 94099 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 533-227 chr8 79640822 79641116 + 3 NA intron (NM_007029, intron 2 of 4) intron (NM_007029, intron 2 of 4) 29852 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 302-26 chr1 188892569 188892752 + 3 NA Intergenic L1MA8|LINE|L1 1449032 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 280-349 chr6 55961343 55961512 + 3 NA Intergenic Intergenic -85837 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 387-238 chr3 180345182 180345403 + 3 NA Intergenic L1MA5A|LINE|L1 -68881 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 508-68 chr15 81060957 81061259 + 3 NA Intergenic HAL1b|LINE|L1 60185 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 455-172 chr3 137521814 137522106 + 3 NA Intergenic Intergenic -242355 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 566-116 chr21 31042791 31043030 + 3 NA Intergenic Intergenic -4434 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 594-34 chr12 7106349 7106696 + 3 NA intron (NM_001297642, intron 2 of 5) HAL1|LINE|L1 -1786 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 561-35 chr11 54548437 54548717 + 3 NA Intergenic ALR/Alpha|Satellite|centr 55421 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 537-265 chr8 132338001 132338211 + 3 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR 109156 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 345-536 chr8 126099146 126099380 + 3 NA Intergenic LTR57-int|LTR|ERVL -148066 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 422-6 chr1 58706775 58706986 + 3 NA Intergenic L1MEc|LINE|L1 -6818 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 323-571 chr9 11224970 11225152 + 3 NA Intergenic Intergenic 611855 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 548-139 chr22 23237681 23237897 + 3 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) -24978 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 528-230 chr7 16870413 16870843 + 3 NA intron (NM_176813, intron 3 of 7) L1M4|LINE|L1 11355 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 712-11 chr1 229827162 229827568 + 3 NA Intergenic MER101-int|LTR|ERV1 58453 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 576-110 chr3 110807635 110807976 + 3 NA Intergenic Intergenic 262154 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 683-18 chr12 75923754 75924205 + 3 NA Intergenic Intergenic 107797 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 411-219 chr5 8741393 8741698 + 3 NA Intergenic Intergenic -98187 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 443-82 chr13 71050925 71051113 + 3 NA intron (NR_047699, intron 1 of 3) intron (NR_047699, intron 1 of 3) 35878 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 325-317 chr21 15766892 15767095 + 3 NA intron (NM_001352561, intron 3 of 23) intron (NM_001352561, intron 3 of 23) 37011 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 468-270 chr5 158458931 158459199 + 3 NA Intergenic L3|LINE|CR1 -49292 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 725-62 chr8 138431404 138431744 + 3 NA intron (NM_001362965, intron 1 of 19) MER58A|DNA|hAT-Charlie 65687 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 1110-4 chr12 114330695 114331558 + 3 NA Intergenic Intergenic 75018 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 563-124 chr3 88047615 88047969 + 3 NA Intergenic Intergenic 11204 NM_003663 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 540-189 chr6 164176642 164176966 + 3 NA Intergenic L2|LINE|L2 -505320 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 471-214 chr5 106179300 106179604 + 3 NA Intergenic L1MB4|LINE|L1 831562 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 1039-17 chr5 46245029 46245598 + 3 NA Intergenic ALR/Alpha|Satellite|centr -548933 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 825-35 chr4 368780 369250 + 3 NA intron (NM_003441, intron 3 of 3) L1MB2|LINE|L1 18858 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 365-350 chr6 64140846 64141001 + 3 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 334087 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 556-147 chr3 113315451 113315758 + 3 NA intron (NM_001164496, intron 28 of 34) L1MDa|LINE|L1 -88394 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 501-74 chr15 98481639 98481903 + 3 NA intron (NM_182562, intron 3 of 6) intron (NM_182562, intron 3 of 6) 32565 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 349-112 chr12 15051491 15051678 + 3 NA Intergenic Intergenic 49751 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 528-175 chr4 45767575 45767913 + 3 NA Intergenic L1MEg|LINE|L1 356310 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 384-352 chr7 95002457 95002649 + 3 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 92655 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 762-35 chr2 100854425 100854842 + 3 NA intron (NM_002518, intron 1 of 20) MLT1K|LTR|ERVL-MaLR 34494 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 429-35 chr10 47444599 47444822 + 3 NA Intergenic Intergenic -30235 NR_134499 105378292 Hs.131331 NR_134499 LOC105378292 - uncharacterized LOC105378292 ncRNA 599-118 chr6 126385262 126385551 + 3 NA intron (NR_104462, intron 2 of 3) L1PREC2|LINE|L1 45291 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 403-50 chr11 48535778 48535946 + 3 NA Intergenic L1M5|LINE|L1 47069 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 436-239 chr5 41531391 41531607 + 3 NA Intergenic Intergenic -20898 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 1116-3 chr13 29293308 29293843 + 3 NA intron (NM_001033602, intron 4 of 13) L1ME3G|LINE|L1 -135085 NM_015233 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 181-15 chr10 59001234 59001294 + 3 NA non-coding (NR_108046, exon 2 of 2) non-coding (NR_108046, exon 2 of 2) 1746 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 354-70 chr10 131800291 131800442 + 3 NA Intergenic L2c|LINE|L2 -10167 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 560-108 chr22 26110953 26111230 + 3 NA Intergenic Intergenic -58371 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 329-583 chr8 111504167 111504391 + 3 NA Intergenic Intergenic 127640 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 976-3 chr10 33363478 33364047 + 3 NA Intergenic Intergenic -28857 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 765-54 chr5 24499970 24500533 + 3 NA intron (NM_001317222, intron 7 of 10) intron (NM_001317222, intron 7 of 10) 144727 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 370-78 chr11 21528874 21529089 + 3 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) -664104 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 534-202 chr5 123935746 123935967 + 3 NA Intergenic L1HS|LINE|L1 390439 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 602-76 chr20 42150868 42151248 + 3 NA intron (NM_133170, intron 18 of 31) intron (NM_133170, intron 18 of 31) -532681 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 450-306 chr8 114750318 114750557 + 3 NA Intergenic Intergenic 917576 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 1112-14 chr8 120659727 120660321 + 3 NA intron (NM_021021, intron 2 of 6) Tigger1|DNA|TcMar-Tigger -101229 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 576-134 chr5 45940430 45940689 + 3 NA Intergenic ALR/Alpha|Satellite|centr -244179 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 296-353 chr5 12083055 12083205 + 3 NA Intergenic L1MA4A|LINE|L1 -178684 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 510-259 chr7 36202394 36202713 + 3 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 49299 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 866-42 chr6 68492786 68493396 + 3 NA Intergenic L1MEc|LINE|L1 141233 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 634-37 chr12 16130737 16131121 + 3 NA Intergenic LTR81B|LTR|Gypsy 146756 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 514-119 chr17 61241500 61241910 + 3 NA intron (NM_001330413, intron 23 of 25) AluY|SINE|Alu 125999 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 318-46 chr1 238992748 238992891 + 3 NA Intergenic Intergenic -393749 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 488-295 chr9 108753129 108753443 + 3 NA Intergenic MIRb|SINE|MIR 102700 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 895-30 chr4 12065387 12065906 + 3 NA Intergenic Intergenic -157805 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 547-182 chr5 44091548 44091813 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR -297052 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 616-152 chr7 4509831 4510160 + 3 NA Intergenic L1PA13|LINE|L1 -172300 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 326-11 chr1 62055371 62055551 + 3 NA intron (NM_001350145, intron 31 of 43) MIR|SINE|MIR -23325 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 456-271 chr5 178913625 178913884 + 3 NA intron (NM_030613, intron 3 of 4) intron (NM_030613, intron 3 of 4) 17841 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 204 chr1 54646727 54646869 + 3 NA intron (NM_001291332, intron 1 of 21) L1MB5|LINE|L1 5012 NM_001039464 374977 Hs.412482 NM_198547 ENSG00000184313 MROH7 C1orf175|HEATR8 maestro heat like repeat family member 7 protein-coding 345-441 chr5 134857429 134857575 + 3 NA 3' UTR (NM_001300894, exon 3 of 3) 3' UTR (NM_001300894, exon 3 of 3) 11534 NM_001135586 134553 Hs.708536 NM_152409 ENSG00000181904 C5orf24 - chromosome 5 open reading frame 24 protein-coding 618-140 chr9 96737688 96737969 + 3 NA Intergenic Intergenic 12007 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 423-128 chr2 49333381 49333614 + 3 NA Intergenic Intergenic -178970 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 483-183 chr4 33668064 33668246 + 3 NA Intergenic MIRb|SINE|MIR 371738 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 531-3 chr1 45103411 45103694 + 3 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 91298 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 850-49 chr7 114001966 114002375 + 3 NA Intergenic L1PA14|LINE|L1 -83161 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 444-133 chr2 215772442 215772643 + 3 NA intron (NR_037195, intron 1 of 9) intron (NR_037195, intron 1 of 9) 54499 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 828-34 chr4 33181392 33181785 + 3 NA Intergenic L1PBa|LINE|L1 830550 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 760-18 chr14 95778066 95778484 + 3 NA Intergenic MLT2B4|LTR|ERVL 62792 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 636-48 chr14 82244269 82244674 + 3 NA Intergenic Intergenic -398161 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 703-53 chr2 209006859 209007209 + 3 NA Intergenic Intergenic -417013 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 511-23 chr10 79990640 79990951 + 3 NA Intergenic L1M1|LINE|L1 -41690 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 326-261 chr2 125900961 125901114 + 3 NA Intergenic MLT1F1|LTR|ERVL-MaLR 216948 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 633-132 chrX 78894176 78894462 + 3 NA Intergenic L1PA15|LINE|L1 6930 NR_036258 100422932 NR_036258 ENSG00000283622 MIR4328 - microRNA 4328 ncRNA 529-129 chr20 24549091 24549397 + 3 NA intron (NM_024893, intron 2 of 3) L1MA5A|LINE|L1 79283 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 919-21 chr7 47156598 47157050 + 3 NA Intergenic L1ME3Cz|LINE|L1 307979 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 625-27 chr12 109003019 109003456 + 3 NA intron (NM_018711, intron 1 of 15) L1ME4b|LINE|L1 17831 NM_018711 55530 Hs.4221 NM_018711 ENSG00000166111 SVOP - SV2 related protein protein-coding 486-181 chr21 19661853 19662125 + 3 NA Intergenic L1M4|LINE|L1 237766 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 428-318 chr9 90403894 90404109 + 3 NA intron (NR_109795, intron 1 of 2) intron (NR_109795, intron 1 of 2) 29488 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 338-550 chr8 107735086 107735262 + 3 NA Intergenic LTR33|LTR|ERVL -237256 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 621-93 chr5 33133911 33134207 + 3 NA Intergenic L1M3b|LINE|L1 -95676 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 434-241 chr6 22795423 22795641 + 3 NA Intergenic L1PA16|LINE|L1 -77608 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 518-238 chr5 72372345 72372612 + 3 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 52105 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 176-145 chr8 120340894 120341022 + 3 NA intron (NM_021110, intron 42 of 47) L1ME4a|LINE|L1 104192 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 481-101 chr15 63413860 63414080 + 3 NA intron (NR_120375, intron 4 of 6) intron (NR_120375, intron 4 of 6) 23740 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 487-90 chr14 72821639 72821838 + 3 NA intron (NM_001280542, intron 1 of 10) AluJr|SINE|Alu 70911 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 981-28 chr7 32016235 32016847 + 3 NA intron (NM_001322059, intron 3 of 17) L1ME4a|LINE|L1 53866 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 395-31 chr10 26519853 26520160 + 3 NA intron (NM_019043, intron 8 of 14) AluJb|SINE|Alu 59301 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 479-156 chr4 37317891 37318056 + 3 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 73230 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 803-41 chr5 18850951 18851319 + 3 NA Intergenic HAL1b|LINE|L1 1035137 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 347-441 chr6 132237074 132237220 + 3 NA Intergenic LFSINE_Vert|SINE|tRNA 103169 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 482-79 chr14 80188608 80188901 + 3 NA Intergenic L1MC1|LINE|L1 -22665 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 605-80 chr3 176885698 176885966 + 3 NA Intergenic L1MA3|LINE|L1 -68831 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 473-233 chr5 155757419 155757699 + 3 NA Intergenic MIRb|SINE|MIR -569198 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 777-5 chr10 31690384 31690784 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 218342 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 371-74 chr11 106194157 106194402 + 3 NA Intergenic Intergenic -55740 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 286-12 chr1 65851605 65851795 + 3 NA intron (NM_002600, intron 1 of 16) L1MEc|LINE|L1 58805 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 384-341 chr7 31456621 31456794 + 3 NA Intergenic Intergenic -57364 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 317-126 chr13 80622195 80622330 + 3 NA Intergenic Intergenic -281136 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 657-17 chr11 5638334 5638615 + 3 NA intron (NM_001003819, intron 10 of 13) intron (NM_001003819, intron 10 of 13) 6219 NM_130390 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 610-30 chr11 54957564 54957851 + 3 NA Intergenic ALR/Alpha|Satellite|centr 250875 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 489-175 chr3 64085709 64085887 + 3 NA intron (NR_033978, intron 1 of 3) intron (NR_033978, intron 1 of 3) 1565 NR_033978 100287879 Hs.452789 NR_033978 ENSG00000189196 LINC00994 - long intergenic non-protein coding RNA 994 ncRNA 440-191 chr5 22926720 22927047 + 3 NA Intergenic Intergenic -73539 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 565-119 chr3 118851196 118851394 + 3 NA Intergenic HERV17-int|LTR|ERV1 -40462 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 889-31 chr5 129555942 129556647 + 3 NA intron (NM_133638, intron 7 of 22) intron (NM_133638, intron 7 of 22) -95605 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 490-213 chr5 11580989 11581185 + 3 NA intron (NM_001288717, intron 2 of 20) L3|LINE|CR1 7830 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 816-53 chr9 93914738 93915157 + 3 NA Intergenic Intergenic 40408 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 471-194 chr4 95372354 95372628 + 3 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 176482 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 215-284 chr7 3948971 3949060 + 3 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -180670 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1022-17 chr5 45888727 45889231 + 3 NA Intergenic L2|LINE|L2 -192599 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 806-17 chr14 57604774 57605237 + 3 NA intron (NM_001352014, intron 1 of 9) L1PA16|LINE|L1 -111148 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 366-237 chr2 198677357 198677574 + 3 NA Intergenic Intergenic -302368 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 491-265 chr8 114776294 114776614 + 3 NA Intergenic L1ME2|LINE|L1 891559 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 283-235 chr2 102963809 102963978 + 3 NA Intergenic Intergenic 20536 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 358-133 chr15 37407030 37407278 + 3 NA Intergenic Intergenic -305843 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 460-239 chr5 67471544 67471730 + 3 NA Intergenic L1ME1|LINE|L1 175152 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 709-7 chr10 65281126 65281598 + 3 NA Intergenic AluJo|SINE|Alu -290063 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 402-168 chr2 138325670 138325929 + 3 NA Intergenic MamRTE1|LINE|RTE-BovB -175971 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 1340 chr11 11762613 11763343 + 3 NA Intergenic Intergenic 20244 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 474-306 chr9 36185238 36185413 + 3 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -5531 NM_001184762 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 346-386 chr5 42456974 42457221 + 3 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 32116 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 868-4 chr11 70689334 70689859 + 3 NA intron (NM_012309, intron 14 of 24) HAL1ME|LINE|L1 -27755 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 1105-2 chr11 40959396 40960167 + 3 NA intron (NM_001258419, intron 1 of 6) Charlie15b|DNA|hAT-Charlie 499855 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 284-417 chr8 126958886 126959063 + 3 NA Intergenic L1ME3A|LINE|L1 -54180 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 585-75 chr2 114041560 114041892 + 3 NA Intergenic MIRc|SINE|MIR -61742 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 1337 chr12 9145593 9146218 + 3 NA Intergenic L1MB1|LINE|L1 -29676 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 315-312 chr3 88271760 88271900 + 3 NA Intergenic Intergenic -66626 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 494-297 chr8 122493103 122493300 + 3 NA intron (NR_131202, intron 2 of 3) L1PA14|LINE|L1 75443 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 521-268 chr9 79279372 79279651 + 3 NA Intergenic MER115|DNA|hAT-Tip100 -133845 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 510-162 chr2 230342743 230342997 + 3 NA intron (NM_001352892, intron 2 of 18) L1PA10|LINE|L1 15699 NM_001352894 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 484-267 chr8 92475512 92475821 + 3 NA Intergenic Intergenic 179828 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 487-226 chr5 37897246 37897469 + 3 NA Intergenic Intergenic -51134 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 318-450 chr5 93180165 93180347 + 3 NA Intergenic L1MEj|LINE|L1 391087 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 460-308 chrX 67294405 67294571 + 3 NA Intergenic L2a|LINE|L2 -249533 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 401-120 chr16 55529570 55529811 + 3 NA intron (NM_017839, intron 3 of 13) intron (NM_017839, intron 3 of 13) 20618 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 1415-3 chr16 13697042 13697925 + 3 NA Intergenic MIR3|SINE|MIR -222674 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 541-10 chr1 215300422 215300638 + 3 NA Intergenic L1MEc|LINE|L1 217793 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 747-38 chr2 191861476 191861856 + 3 NA Intergenic MIRb|SINE|MIR -14578 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 596-34 chr11 26390280 26390592 + 3 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 58306 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 676-68 chr20 10523502 10523873 + 3 NA intron (NM_001009608, intron 2 of 7) L2b|LINE|L2 88382 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 679-113 chr8 139750283 139750594 + 3 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -47315 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 423-272 chr7 71819787 71820045 + 3 NA intron (NM_001363460, intron 4 of 5) MER4B|LTR|ERV1 -512146 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 688-84 chr4 65471436 65471796 + 3 NA intron (NM_001281767, intron 5 of 16) THE1D|LTR|ERVL-MaLR 197872 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 535-34 chr10 124407781 124408118 + 3 NA intron (NM_001322974, intron 3 of 9) intron (NM_001322974, intron 3 of 9) 10974 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 496-165 chr21 20153300 20153583 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 105244 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 450-227 chr4 95414780 95415001 + 3 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 134083 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 542-173 chr5 105048236 105048589 + 3 NA Intergenic Intergenic -51062 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 578-158 chr7 49509271 49509638 + 3 NA Intergenic LTR37-int|LTR|ERV1 -264184 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 498-155 chr21 26996058 26996341 + 3 NA Intergenic Intergenic -29111 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 386-23 chr10 4760275 4760403 + 3 NA Intergenic Intergenic -65838 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 380-323 chr5 163135505 163135691 + 3 NA Intergenic Intergenic -301973 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 520-275 chr7 30746003 30746345 + 3 NA Intergenic L1MD2|LINE|L1 -5961 NM_006774 11185 Hs.632629 NM_006774 ENSG00000241644 INMT TEMT indolethylamine N-methyltransferase protein-coding 663-71 chr4 12538549 12538861 + 3 NA Intergenic L1ME2|LINE|L1 315254 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 641-58 chr2 22528316 22528708 + 3 NA Intergenic L1MEd|LINE|L1 -7967 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 478-270 chr7 54081926 54082115 + 3 NA Intergenic Intergenic -248677 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 422-254 chr6 40737420 40737603 + 3 NA Intergenic Intergenic -150147 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 950-21 chr3 116603566 116604246 + 3 NA Intergenic Intergenic 51433 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 687-17 chr10 82593614 82593924 + 3 NA intron (NR_163253, intron 3 of 10) (TA)n|Simple_repeat|Simple_repeat -360849 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 481-216 chr4 44202750 44203002 + 3 NA intron (NM_198353, intron 1 of 1) MER45B|DNA|hAT-Tip100 185814 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 513-137 chr2 114232157 114232466 + 3 NA Intergenic L1ME3G|LINE|L1 -210330 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 481-209 chr3 154942123 154942361 + 3 NA Intergenic L1MA5A|LINE|L1 -81882 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 382-159 chr18 78273817 78274015 + 3 NA Intergenic L1ME3E|LINE|L1 -280189 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 935-17 chr19 56633855 56634354 + 3 NA intron (NR_163262, intron 3 of 5) MLT1H|LTR|ERVL-MaLR -9055 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 457-62 chr14 42490860 42491039 + 3 NA Intergenic Intergenic 884093 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 483-282 chr9 28936374 28936551 + 3 NA intron (NM_001354574, intron 2 of 5) MIRc|SINE|MIR -47507 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 503-124 chr17 70074184 70074366 + 3 NA promoter-TSS (NM_001291622) promoter-TSS (NM_001291622) -950 NM_001291622 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 628-71 chr2 67782148 67782494 + 3 NA Intergenic Intergenic 43241 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 448-304 chr9 137345982 137346237 + 3 NA intron (NM_017820, intron 17 of 21) AluY|SINE|Alu -43838 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 450-300 chr8 82492739 82493008 + 3 NA Intergenic L1MC4|LINE|L1 -419231 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 719-19 chr12 34423776 34424166 + 3 NA Intergenic ALR/Alpha|Satellite|centr 401475 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 454-174 chr2 129545125 129545322 + 3 NA Intergenic Intergenic -271332 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 491-169 chr3 98491776 98492083 + 3 NA Intergenic L1MA8|LINE|L1 -5752 NM_001004737 402135 Hs.632558 NM_001004737 ENSG00000231861 OR5K2 OR3-9 olfactory receptor family 5 subfamily K member 2 protein-coding 458-49 chr12 46779191 46779498 + 3 NA intron (NM_018018, intron 10 of 16) intron (NM_018018, intron 10 of 16) 46653 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 470-142 chr2 176984361 176984540 + 3 NA Intergenic Intergenic 227961 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 543-233 chr7 81820290 81820632 + 3 NA Intergenic Intergenic -50414 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 283-76 chr11 27841663 27841822 + 3 NA Intergenic Intergenic -119712 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 362-179 chr16 20689812 20690023 + 3 NA intron (NM_001318890, intron 2 of 13) MIR|SINE|MIR 1339 NM_052956 116285 Hs.306812 NM_052956 ENSG00000166743 ACSM1 BUCS1|MACS1 acyl-CoA synthetase medium chain family member 1 protein-coding 590-107 chr3 103719975 103720193 + 3 NA Intergenic L1MA9|LINE|L1 -195968 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 398-95 chr14 28361628 28361809 + 3 NA Intergenic L1M4|LINE|L1 403601 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 425-251 chr5 171980714 171980884 + 3 NA intron (NM_012300, intron 1 of 12) MER21C|LTR|ERVL 26074 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 400-333 chr8 43683685 43683898 + 3 NA Intergenic ALR/Alpha|Satellite|centr 391349 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 699-17 chr11 63303121 63303613 + 3 NA intron (NM_001039752, intron 7 of 9) L3|LINE|CR1 13464 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 240-422 chr8 121329346 121329491 + 3 NA Intergenic L2a|LINE|L2 -309928 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 723-23 chr14 68329012 68329259 + 3 NA intron (NM_133509, intron 8 of 10) AluJr4|SINE|Alu 299652 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 265-380 chr8 13143442 13143618 + 3 NA intron (NM_001348082, intron 5 of 16) AluJr|SINE|Alu -10241 NM_006094 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 1007-2 chr1 48287702 48288442 + 3 NA Intergenic L1MA9|LINE|L1 65356 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 530-24 chr10 20880912 20881137 + 3 NA intron (NM_006393, intron 4 of 27) intron (NM_006393, intron 4 of 27) 16578 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 357-156 chr17 69922081 69922297 + 3 NA Intergenic L1ME1|LINE|L1 -39518 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 410-53 chr11 48573974 48574212 + 3 NA Intergenic Intergenic 85300 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 634-54 chr14 50475062 50475313 + 3 NA intron (NM_198794, intron 8 of 31) intron (NM_198794, intron 8 of 31) 57382 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 538-170 chr4 41387029 41387291 + 3 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 26353 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 297-414 chr6 101195442 101195600 + 3 NA Intergenic Intergenic -203464 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 796 chr1 106531264 106531744 + 3 NA Intergenic L1MCa|LINE|L1 -286735 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 634-78 chr2 118212627 118213031 + 3 NA Intergenic L1MD1|LINE|L1 -26443 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 565-51 chr15 87531859 87532121 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -44939 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 939-28 chr8 30914698 30915043 + 3 NA Intergenic AluSz|SINE|Alu -1862 NM_001350162 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 903-9 chr12 119491243 119491831 + 3 NA intron (NM_178499, intron 5 of 13) AluY|SINE|Alu -102237 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 627-12 chr10 98347593 98347864 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR 47579 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 413-145 chr2 100254223 100254399 + 3 NA Intergenic Intergenic 46057 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 395-80 chr12 133084822 133085059 + 3 NA intron (NM_001300777, intron 4 of 4) intron (NM_001300777, intron 4 of 4) 4737 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 310-249 chr2 103460517 103460751 + 3 NA Intergenic AluJo|SINE|Alu -476205 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 572-106 chr21 22519391 22519636 + 3 NA Intergenic Intergenic 420896 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 461-132 chr2 79288963 79289218 + 3 NA Intergenic Intergenic -129337 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 460-184 chr21 33996429 33996750 + 3 NA Intergenic L1MEh|LINE|L1 20207 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 366-401 chr7 12098408 12098557 + 3 NA Intergenic Tigger18a|DNA|TcMar-Tigger -112812 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 424-102 chr17 68645464 68645687 + 3 NA intron (NR_110825, intron 2 of 4) MLT1B|LTR|ERVL-MaLR 17421 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 761-23 chr2 79346596 79346984 + 3 NA Intergenic Intergenic 154054 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 578-133 chr4 145025603 145025825 + 3 NA intron (NM_001256710, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 71668 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 1365-4 chr3 10907237 10907959 + 3 NA intron (NM_014229, intron 6 of 13) L1M8|LINE|L1 -85136 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 985-13 chr19 56419397 56419863 + 3 NA intron (NM_001159860, intron 4 of 4) L1ME2|LINE|L1 15298 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 587-150 chr7 35462871 35463219 + 3 NA Intergenic L1M6|LINE|L1 149190 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 440-236 chr7 52433258 52433514 + 3 NA Intergenic Intergenic -602247 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 584-12 chr1 166234580 166234959 + 3 NA Intergenic L1PA14|LINE|L1 -68014 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 1393-2 chr6 164721628 164722742 + 3 NA Intergenic L1M4|LINE|L1 99878 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 609-85 chr4 31552582 31552951 + 3 NA intron (NR_149121, intron 1 of 2) L1MC4|LINE|L1 46222 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 514-227 chr5 92545667 92545901 + 3 NA Intergenic Intergenic 1025559 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 460-182 chr21 32034455 32034705 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 51715 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 283-173 chr17 4651185 4651341 + 3 NA Intergenic AluSx1|SINE|Alu -9585 NM_001140 246 Hs.73809 NM_001140 ENSG00000161905 ALOX15 12-LOX|15-LOX|15-LOX-1|LOG15 arachidonate 15-lipoxygenase protein-coding 359-483 chr8 118515559 118515731 + 3 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -105356 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 809-31 chr3 35195153 35195630 + 3 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 198632 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 573-20 chr10 26297616 26297825 + 3 NA intron (NM_000818, intron 15 of 16) LTR51|LTR|ERV1 80946 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 569-33 chr10 123598460 123598684 + 3 NA Intergenic MLT1E3|LTR|ERVL-MaLR -67783 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 280-454 chrX 72549867 72550020 + 3 NA intron (NM_001166448, intron 2 of 4) L2|LINE|L2 22900 NM_001166418 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 360-405 chr6 56767098 56767250 + 3 NA intron (NM_001144770, intron 2 of 94) intron (NM_001144770, intron 2 of 94) 76491 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 459-216 chr4 72538599 72538805 + 3 NA intron (NM_014243, intron 3 of 21) L1M4c|LINE|L1 30519 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 733-73 chr7 7527423 7527749 + 3 NA intron (NM_001037763, intron 3 of 34) intron (NM_001037763, intron 3 of 34) 8287 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 562-51 chr12 120434426 120434671 + 3 NA Intergenic L2c|LINE|L2 -3565 NM_004373 1337 Hs.369624 NM_004373 ENSG00000111775 COX6A1 CMTRID|COX6A|COX6AL cytochrome c oxidase subunit 6A1 protein-coding 682-70 chr4 20970966 20971373 + 3 NA intron (NM_147182, intron 2 of 8) L2b|LINE|L2 12840 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 428-3 chr1 107816988 107817165 + 3 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -80147 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 387-57 chr11 39101752 39101978 + 3 NA Intergenic Intergenic 453007 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 407-54 chr11 88230043 88230197 + 3 NA Intergenic L1PB4|LINE|L1 53618 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 472-116 chr16 89025969 89026157 + 3 NA Intergenic Intergenic -48856 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 422-44 chr11 81617855 81618064 + 3 NA Intergenic L1MA5|LINE|L1 272877 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 1039-8 chr15 70996242 70996896 + 3 NA intron (NM_017691, intron 11 of 15) intron (NM_017691, intron 11 of 15) 104126 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 349-220 chr18 78084628 78084860 + 3 NA Intergenic Intergenic -91017 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 577-115 chr3 3226194 3226523 + 3 NA Intergenic Tigger18a|DNA|TcMar-Tigger -46641 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 387-217 chr3 5576144 5576458 + 3 NA Intergenic Intergenic -326046 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 510-46 chr11 61077899 61078304 + 3 NA Intergenic MIR|SINE|MIR -15862 NM_001346456 921 Hs.58685 NM_014207 ENSG00000110448 CD5 LEU1|T1 CD5 molecule protein-coding 1045-17 chr5 54204098 54204754 + 3 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 106147 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 676-48 chr18 68356561 68356892 + 3 NA Intergenic MER52-int|LTR|ERV1 358382 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 507-66 chr12 42734381 42734655 + 3 NA Intergenic Intergenic 42302 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 441-39 chr11 35106872 35107097 + 3 NA Intergenic LTR16E1|LTR|ERVL 31048 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 373-261 chr3 98269017 98269314 + 3 NA Intergenic L1M1|LINE|L1 4921 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 512-5 chr1 37014680 37014960 + 3 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 19695 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 587-59 chr16 81156210 81156421 + 3 NA intron (NM_052892, intron 24 of 43) intron (NM_052892, intron 24 of 43) 25016 NM_001278423 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 619-57 chr16 17754929 17755227 + 3 NA Intergenic Intergenic -284118 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 700-48 chr2 48275593 48275939 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -38916 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 602-19 chr11 35643670 35644016 + 3 NA Intergenic MIRb|SINE|MIR -18932 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 535-148 chr2 229067689 229068024 + 3 NA intron (NM_001330157, intron 1 of 1) L2c|LINE|L2 164236 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 681-3 chr10 23905511 23905873 + 3 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 210965 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 487-25 chr1 182584369 182584631 + 3 NA intron (NM_021133, intron 2 of 6) intron (NM_021133, intron 2 of 6) 4756 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 785-46 chr5 105322283 105322630 + 3 NA Intergenic Intergenic 222982 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 416-351 chr9 38301113 38301305 + 3 NA Intergenic Intergenic -91493 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 485-278 chr8 17417911 17418219 + 3 NA Intergenic Intergenic -4714 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 489-213 chr5 150866500 150866741 + 3 NA intron (NM_001346557, intron 2 of 3) intron (NM_001346557, intron 2 of 3) 20097 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 573-180 chr7 32065209 32065581 + 3 NA intron (NM_001191059, intron 2 of 18) intron (NM_001191059, intron 2 of 18) 5012 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 969-23 chr9 121953721 121954202 + 3 NA intron (NM_001139442, intron 6 of 8) intron (NM_001139442, intron 6 of 8) 139645 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 512-25 chr1 240317633 240317844 + 3 NA intron (NM_020066, intron 8 of 17) L1MD2|LINE|L1 225855 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 820-41 chr4 143120773 143121206 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 63872 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 870-15 chr2 80859333 80859749 + 3 NA Intergenic Intergenic 546162 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 371-95 chr13 74449045 74449333 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 30016 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 640-74 chr21 27620598 27620988 + 3 NA Intergenic Intergenic -101586 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 244-314 chr5 175594786 175594874 + 3 NA Intergenic L2a|LINE|L2 -63241 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 203-15 chr1 197725532 197725608 + 3 NA intron (NR_125340, intron 2 of 19) L1ME3G|LINE|L1 49910 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 354-84 chr11 82776512 82776676 + 3 NA Intergenic L1M1|LINE|L1 -42730 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 336-122 chr12 23369111 23369304 + 3 NA Intergenic L1MC4|LINE|L1 193571 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 1105 chr11 27035341 27036005 + 3 NA Intergenic L1PA13|LINE|L1 -5142 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 323-292 chr20 19746091 19746238 + 3 NA Intergenic MLT1H2|LTR|ERVL-MaLR -140357 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 726-5 chr1 224995712 224996040 + 3 NA intron (NM_001349911, intron 8 of 10) L1MA7|LINE|L1 66201 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 622-3 chr1 80591690 80592049 + 3 NA intron (NR_125940, intron 2 of 3) L1M5|LINE|L1 -49418 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 446-335 chrX 141715321 141715520 + 3 NA Intergenic L1M2c|LINE|L1 -16681 NM_032417 64648 Hs.375036 NM_032417 ENSG00000196406 SPANXD CT11.3|CT11.4|SPANX-C|SPANX-D|SPANX-E|SPANXC|SPANXE|dJ171K16.1 SPANX family member D protein-coding 405-234 chr4 112816913 112817097 + 3 NA promoter-TSS (NM_001354277) promoter-TSS (NM_001354277) -992 NM_001354275 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 837 chr10 41776444 41776858 + 3 NA Intergenic ALR/Alpha|Satellite|centr 591394 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 506-193 chr3 191163375 191163696 + 3 NA Intergenic L1ME3A|LINE|L1 -35706 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 333-297 chr20 11012765 11012943 + 3 NA Intergenic Intergenic -13690 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 442-33 chr10 93691572 93691757 + 3 NA intron (NR_144635, intron 6 of 12) intron (NR_144635, intron 6 of 12) 10908 NM_001347712 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 971-16 chr4 44140918 44141575 + 3 NA Intergenic L1MC2|LINE|L1 124184 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 346-87 chr12 5415711 5415854 + 3 NA Intergenic L1ME3|LINE|L1 -16326 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 1132 chr10 28824381 28824861 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -21787 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 416-42 chr10 62524002 62524277 + 3 NA intron (NM_199452, intron 1 of 6) L1PB1|LINE|L1 3691 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 734-69 chr7 26649509 26649859 + 3 NA Intergenic Intergenic 11813 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 848-20 chr2 14574301 14574675 + 3 NA Intergenic Intergenic -58229 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 732-65 chr3 138573993 138574286 + 3 NA intron (NM_001320598, intron 2 of 17) L1P2|LINE|L1 17817 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 453-178 chr4 38234461 38234781 + 3 NA Intergenic Intergenic 114667 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 563-44 chr12 130230676 130231016 + 3 NA Intergenic L1MC5|LINE|L1 68387 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 500-21 chr1 241583819 241584044 + 3 NA intron (NM_003679, intron 10 of 14) intron (NM_003679, intron 10 of 14) 51553 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 479-117 chr2 213825113 213825375 + 3 NA intron (NR_047660, intron 9 of 14) L1MA3|LINE|L1 67177 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 637 chr1 44310102 44310372 + 3 NA intron (NM_001301698, intron 4 of 7) intron (NM_001301698, intron 4 of 7) 45020 NM_001301698 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 571-126 chr4 182028663 182029054 + 3 NA Intergenic L1MA2|LINE|L1 115657 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 450-282 chr7 62341376 62341537 + 3 NA Intergenic Intergenic 962600 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 385-168 chr2 36059523 36059669 + 3 NA Intergenic Intergenic 295974 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 435-188 chr5 20989745 20989917 + 3 NA Intergenic L1PA16|LINE|L1 -374296 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 801-15 chr15 101607185 101607693 + 3 NA intron (NR_147041, intron 2 of 2) MER63C|DNA|hAT-Blackjack 6900 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 552-22 chr10 83458649 83458931 + 3 NA Intergenic LTR1|LTR|ERV1 218299 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 454-321 chr8 122257891 122258104 + 3 NA Intergenic L1M2|LINE|L1 310647 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 507-115 chr19 56604597 56604922 + 3 NA intron (NR_163263, intron 2 of 4) intron (NR_163263, intron 2 of 4) 9457 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 539-209 chr8 125943993 125944345 + 3 NA non-coding (NR_038446, exon 2 of 2) non-coding (NR_038446, exon 2 of 2) 7028 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 597-103 chr5 5581096 5581490 + 3 NA Intergenic Intergenic 158616 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 485-121 chr19 57949846 57950120 + 3 NA Intergenic LTR2752|LTR|ERV1 -2277 NM_005773 10172 Hs.596242 NM_005773 ENSG00000152454 ZNF256 BMZF-3|BMZF3 zinc finger protein 256 protein-coding 339-293 chr2 191482314 191482500 + 3 NA Intergenic L1M4b|LINE|L1 -195665 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 871-11 chr18 69269228 69269585 + 3 NA Intergenic L1MC4a|LINE|L1 -131482 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 567-28 chr10 110776524 110776798 + 3 NA intron (NM_001134363, intron 1 of 13) MLT1D|LTR|ERVL-MaLR 94243 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 992-2 chr1 221532446 221532969 + 3 NA Intergenic Intergenic -196411 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 569-124 chr3 192317173 192317429 + 3 NA intron (NM_004113, intron 4 of 5) L1MA3|LINE|L1 78671 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 485-268 chr7 54891494 54891696 + 3 NA Intergenic L1M5|LINE|L1 -127422 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 765-62 chr8 24171799 24172289 + 3 NA Intergenic L1MCc|LINE|L1 -121996 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 808-29 chr2 167585846 167586402 + 3 NA Intergenic Intergenic -232548 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 952-4 chr10 16164436 16164987 + 3 NA Intergenic L1MB4|LINE|L1 -272232 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 449-247 chr7 1350954 1351118 + 3 NA Intergenic L1M4|LINE|L1 108434 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 1109 chr1 40467141 40467817 + 3 NA Intergenic Intergenic -9811 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 519-184 chr5 116113709 116113970 + 3 NA intron (NM_001308080, intron 4 of 6) L1PB4|LINE|L1 28377 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 279-51 chr10 78326820 78326958 + 3 NA Intergenic L1MA4A|LINE|L1 59547 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 520-313 chr8 135461727 135462052 + 3 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 4433 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 772-40 chr4 62833722 62834103 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -672147 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 469-88 chr14 71944576 71944880 + 3 NA intron (NM_001370288, intron 1 of 16) intron (NM_001370288, intron 1 of 16) 11201 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 596-3 chr1 59350337 59350620 + 3 NA intron (NM_001350794, intron 4 of 14) intron (NM_001350794, intron 4 of 14) 40446 NM_001350790 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 644-76 chr5 26264723 26265098 + 3 NA Intergenic L1PA16|LINE|L1 773676 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 256-114 chr14 22133639 22133785 + 3 NA Intergenic L2|LINE|L2 299041 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 584-115 chr4 66614164 66614483 + 3 NA Intergenic L1PA16|LINE|L1 337499 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 386-364 chr8 134703070 134703241 + 3 NA intron (NM_001289394, intron 1 of 16) L1ME1|LINE|L1 -6600 NM_001167583 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 552-57 chr14 48136151 48136510 + 3 NA Intergenic Intergenic -341316 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 433-15 chr1 227653921 227654118 + 3 NA intron (NM_001367909, intron 3 of 3) L1MA9|LINE|L1 43688 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 617-61 chr2 53287962 53288268 + 3 NA Intergenic Intergenic -479668 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 1024-4 chr1 118490258 118490695 + 3 NA Intergenic Intergenic -305248 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 352-134 chr14 31684266 31684452 + 3 NA intron (NR_120408, intron 6 of 9) Kanga1b|DNA|TcMar-Tc2 -30210 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 499-207 chr5 87812270 87812604 + 3 NA Intergenic Intergenic 150395 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 487-303 chr9 22869087 22869404 + 3 NA Intergenic Intergenic 223045 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 467-137 chr2 119502005 119502246 + 3 NA intron (NM_002980, intron 1 of 12) AluJb|SINE|Alu 22327 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 509-219 chr6 88243601 88243857 + 3 NA Intergenic Intergenic -76380 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 583-125 chr4 71375816 71376046 + 3 NA intron (NM_003759, intron 3 of 22) Charlie1b|DNA|hAT-Charlie 36878 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 541-83 chr16 80909812 80910020 + 3 NA Intergenic Charlie22a|DNA|hAT-Charlie -17320 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 763-56 chr6 62611162 62611471 + 3 NA Intergenic MER50-int|LTR|ERV1 -325089 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 422-137 chr19 43856943 43857200 + 3 NA Intergenic Intergenic 23065 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 543-204 chr5 91528532 91528840 + 3 NA Intergenic Intergenic -145369 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 612-36 chr14 32569001 32569316 + 3 NA intron (NM_004274, intron 4 of 13) intron (NM_004274, intron 4 of 13) 239860 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 438-122 chr2 75247920 75248138 + 3 NA Intergenic Intergenic -48509 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 344-122 chr13 65533903 65534080 + 3 NA Intergenic L1M5|LINE|L1 -332056 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 686-22 chr13 60988528 60988895 + 3 NA Intergenic L1M3|LINE|L1 211169 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 698-67 chr5 8524277 8524788 + 3 NA Intergenic Intergenic 63607 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 783-17 chr11 40249876 40250320 + 3 NA intron (NM_001258419, intron 4 of 6) LTR24B|LTR|ERV1 43032 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 654-10 chr1 237634021 237634389 + 3 NA intron (NM_001035, intron 43 of 104) L1MA8|LINE|L1 163086 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 221-44 chr10 106676330 106676429 + 3 NA intron (NM_001206569, intron 13 of 25) intron (NM_001206569, intron 13 of 25) 488327 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 404-102 chr14 68497997 68498246 + 3 NA TTS (NM_002877) TTS (NM_002877) 130666 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 515-175 chr4 33604111 33604415 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 435630 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 387-319 chr6 136178880 136179032 + 3 NA intron (NM_018945, intron 9 of 12) intron (NM_018945, intron 9 of 12) 71355 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 480-74 chr14 53904733 53904934 + 3 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 43651 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 698-23 chr15 27030236 27030661 + 3 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 59267 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 718-41 chr2 102077982 102078382 + 3 NA intron (NM_001320978, intron 1 of 11) L1MB7|LINE|L1 7792 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 515-204 chr5 54595902 54596100 + 3 NA Intergenic Intergenic 78242 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 491-280 chr9 112947320 112947536 + 3 NA Intergenic Intergenic -56552 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 248-274 chr4 42925616 42925737 + 3 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 32410 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 440-89 chr16 82788861 82789039 + 3 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 15631 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 413-42 chr10 89013072 89013320 + 3 NA intron (NM_152872, intron 7 of 7) intron (NM_152872, intron 7 of 7) -20221 NR_028371 100302740 Hs.244139 NR_028371 FAS-AS1 FAS-AS|FASAS|SAF FAS antisense RNA 1 ncRNA 506-305 chrX 43329739 43329962 + 3 NA Intergenic Intergenic 152856 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 558-91 chr2 19628332 19628546 + 3 NA Intergenic L1M2|LINE|L1 -240415 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 427-221 chr6 8913011 8913246 + 3 NA Intergenic L1PA15|LINE|L1 260919 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 556-237 chr8 138647486 138647758 + 3 NA intron (NM_152888, intron 46 of 64) intron (NM_152888, intron 46 of 64) -149892 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 701-12 chr11 20944627 20944978 + 3 NA intron (NM_201551, intron 10 of 18) intron (NM_201551, intron 10 of 18) 275216 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 468-32 chr10 61233533 61233807 + 3 NA Intergenic MER4-int|LTR|ERV1 217395 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 780-23 chr17 59768262 59768677 + 3 NA intron (NM_001329400, intron 4 of 9) AluSx1|SINE|Alu 60815 NM_001329400 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 856-13 chr14 38036351 38036898 + 3 NA Intergenic L1ME3Cz|LINE|L1 -134500 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 445-20 chr10 22767361 22767649 + 3 NA Intergenic MIR|SINE|MIR -52927 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 571-95 chr20 52428898 52429210 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -191784 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 646-5 chr1 115618641 115619014 + 3 NA Intergenic L1MCc|LINE|L1 -23143 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 507-227 chr7 16344604 16344947 + 3 NA intron (NM_001101417, intron 2 of 8) L1M4|LINE|L1 76763 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 723-12 chr10 41778007 41778382 + 3 NA Intergenic ALR/Alpha|Satellite|centr 589851 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 514-230 chr5 114886587 114886864 + 3 NA Intergenic L1PA16|LINE|L1 -113312 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 394-293 chr6 140978371 140978543 + 3 NA Intergenic L2a|LINE|L2 294643 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 428-84 chr16 52682402 52682676 + 3 NA Intergenic L1ME3A|LINE|L1 -75564 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 384-331 chr6 153381653 153381802 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -250445 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 467-41 chr11 6177541 6177763 + 3 NA Intergenic L1ME2|LINE|L1 -7326 NM_001004052 255725 Hs.690457 NM_001004052 ENSG00000255307 OR52B2 OR11-70 olfactory receptor family 52 subfamily B member 2 protein-coding 405-293 chr7 10604853 10605153 + 3 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -97673 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 736-67 chr4 158572338 158572805 + 3 NA intron (NM_001363776, intron 2 of 18) intron (NM_001363776, intron 2 of 18) 50689 NM_001253732 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 673-6 chr1 119378360 119378680 + 3 NA intron (NM_016527, intron 1 of 7) intron (NM_016527, intron 1 of 7) 9574 NR_046780 100874270 NR_046780 ENSG00000230921 HAO2-IT1 - HAO2 intronic transcript 1 ncRNA 493-17 chr1 165283311 165283505 + 3 NA intron (NM_177398, intron 3 of 8) L2c|LINE|L2 72833 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 335-50 chr10 47395851 47396002 + 3 NA Intergenic L1MB4|LINE|L1 -11239 NR_134500 107001062 Hs.576719 NR_134500 LOC107001062 - uncharacterized LOC107001062 ncRNA 367-35 chr1 217246617 217246820 + 3 NA Intergenic Intergenic -109016 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 496-123 chr19 24226443 24226723 + 3 NA Intergenic ALR/Alpha|Satellite|centr -63136 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 256-251 chr3 21176681 21176823 + 3 NA Intergenic L1MA5|LINE|L1 -228974 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 532-183 chr4 64901932 64902257 + 3 NA Intergenic Intergenic 102406 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 687-65 chr2 128721813 128722172 + 3 NA Intergenic L1MC5a|LINE|L1 -142608 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 571-26 chr11 15227793 15228144 + 3 NA intron (NM_001042536, intron 9 of 12) MIRb|SINE|MIR 78866 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 883-25 chr3 104792077 104792553 + 3 NA Intergenic Intergenic -574398 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 309-175 chr15 58404261 58404499 + 3 NA Intergenic Intergenic -27611 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 397-291 chr7 1394182 1394414 + 3 NA Intergenic Intergenic 65172 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 310-277 chr2 203984276 203984455 + 3 NA Intergenic Intergenic 47617 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 785-30 chr21 20395456 20395810 + 3 NA Intergenic MIR|SINE|MIR -136948 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 521-30 chr10 62655347 62655629 + 3 NA exon (NM_199452, exon 4 of 7) exon (NM_199452, exon 4 of 7) 135040 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 673-32 chr14 76018861 76019122 + 3 NA intron (NM_001102564, intron 2 of 8) L1M2|LINE|L1 33228 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 711-31 chr19 46097727 46098141 + 3 NA Intergenic L1PA10|LINE|L1 -20305 NR_163177 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 407-330 chr8 129650900 129651061 + 3 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 29259 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 697-50 chr20 63107235 63107759 + 3 NA Intergenic Intergenic -5178 NR_152601 768097 Hs.635159 NR_003245 ENSG00000231133 HAR1B HAR1R|LINC00065|NCRNA00065 highly accelerated region 1B ncRNA 648-104 chr4 106031110 106031389 + 3 NA Intergenic L1PB1|LINE|L1 -8771 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 710-4 chr1 114300930 114301324 + 3 NA Intergenic HAL1b|LINE|L1 -147258 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 447-293 chr9 73059387 73059571 + 3 NA Intergenic LTR89|LTR|ERVL? -92386 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 444-26 chr10 78219407 78219677 + 3 NA Intergenic Intergenic -29083 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 1116-9 chr3 112227301 112227986 + 3 NA intron (NM_001320531, intron 12 of 27).2 L1MA5|LINE|L1 66573 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 458-78 chr14 72275570 72275768 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -241151 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 464-51 chr13 77707967 77708205 + 3 NA intron (NM_001366665, intron 1 of 7) intron (NM_001366665, intron 1 of 7) 9205 NM_001366665 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 435-197 chr5 92874801 92875035 + 3 NA Intergenic L1MA6|LINE|L1 696425 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 528-263 chr9 119845471 119845717 + 3 NA Intergenic MIRb|SINE|MIR -89466 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 467-132 chr2 66090081 66090394 + 3 NA Intergenic L1PB1|LINE|L1 268091 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 389-6 chr1 56017454 56017718 + 3 NA Intergenic MER5A|DNA|hAT-Charlie 72499 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 305-19 chr1 88447530 88447700 + 3 NA Intergenic Intergenic -236529 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 354-105 chr12 44729369 44729617 + 3 NA intron (NM_006159, intron 10 of 20) L1MB1|LINE|L1 146168 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 702-21 chr13 88135088 88135427 + 3 NA Intergenic Intergenic -7610 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 462-157 chr20 39606408 39606663 + 3 NA Intergenic Intergenic -381787 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 739-2 chr1 171006091 171006456 + 3 NA intron (NM_001163629, intron 15 of 21) L1M3a|LINE|L1 70739 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 447-32 chr10 84980480 84980650 + 3 NA Intergenic L1PB|LINE|L1 218340 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 399-143 chr2 57085572 57085777 + 3 NA Intergenic MER50|LTR|ERV1 -821977 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 747-46 chr3 177653915 177654367 + 3 NA intron (NR_047568, intron 3 of 3) L1PREC2|LINE|L1 -162724 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 589-21 chr11 114708286 114708712 + 3 NA Intergenic Intergenic 29972 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 851-33 chr3 49240964 49241482 + 3 NA intron (NM_001135197, intron 3 of 7) intron (NM_001135197, intron 3 of 7) -32897 NR_036233 100422952 NR_036233 ENSG00000264633 MIR4271 - microRNA 4271 ncRNA 648-49 chr15 93696712 93697013 + 3 NA Intergenic L1M5|LINE|L1 -159698 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 381-274 chr4 71293768 71293932 + 3 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -45203 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 531-113 chr2 79192943 79193205 + 3 NA Intergenic L1ME3C|LINE|L1 -33321 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 594-127 chr6 76250046 76250413 + 3 NA Intergenic Intergenic -177551 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 448-274 chr8 64522424 64522626 + 3 NA Intergenic Intergenic 54738 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 391-69 chr12 16502188 16502352 + 3 NA Intergenic Intergenic 103109 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 541-213 chr7 15415559 15415859 + 3 NA intron (NM_001004320, intron 5 of 12) intron (NM_001004320, intron 5 of 12) 146306 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 455-166 chr3 82139974 82140218 + 3 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 153954 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 156-72 chr4 57412354 57412417 + 3 NA Intergenic L2a|LINE|L2 -13487 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 600-76 chr2 233912058 233912299 + 3 NA Intergenic Intergenic -5195 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 416-131 chr15 92325002 92325163 + 3 NA Intergenic MIR|SINE|MIR -68799 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 295-443 chr7 64080001 64080203 + 3 NA 3' UTR (NM_001159522, exon 4 of 4) 3' UTR (NM_001159522, exon 4 of 4) 34668 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 473-219 chr5 57728788 57729047 + 3 NA Intergenic L1MB1|LINE|L1 78257 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 555-11 chr1 239482005 239482227 + 3 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 95548 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 996-13 chr19 37454163 37454670 + 3 NA intron (NM_152484, intron 2 of 5) L1MCc|LINE|L1 13028 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 933-30 chr5 15859990 15860451 + 3 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -74962 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 466-117 chr2 5907871 5908075 + 3 NA Intergenic L2c|LINE|L2 -24714 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 610-19 chr10 63077551 63077872 + 3 NA Intergenic Intergenic -55536 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 482-138 chr2 196359653 196359886 + 3 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) 2408 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 565-172 chr7 103414723 103414975 + 3 NA intron (NR_135802, intron 4 of 17) intron (NR_135802, intron 4 of 17) 28362 NR_120442 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 363-449 chr8 108173439 108173645 + 3 NA Intergenic L1ME1|LINE|L1 75175 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 681-6 chr10 83905733 83906125 + 3 NA Intergenic Intergenic -228840 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 386-223 chr22 44860473 44860635 + 3 NA intron (NM_181335, intron 11 of 11) MLT1C|LTR|ERVL-MaLR 107996 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 777-64 chr7 30057017 30057634 + 3 NA intron (NM_001363473, intron 9 of 12) L1ME2|LINE|L1 12240 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 488 chr1 4581558 4581825 + 3 NA intron (NR_147025, intron 2 of 4) intron (NR_147025, intron 2 of 4) 10204 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 408-289 chr6 35818611 35818808 + 3 NA intron (NM_182548, intron 2 of 3) MIR|SINE|MIR 13357 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 556-127 chr20 43672224 43672425 + 3 NA intron (NM_001278610, intron 1 of 12) FLAM_A|SINE|Alu 5210 NM_002466 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 322-10 chr1 69128399 69128575 + 3 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 72589 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 503-199 chr3 94314278 94314517 + 3 NA Intergenic Intergenic 251336 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 404-245 chr4 180012230 180012500 + 3 NA Intergenic Intergenic 1146784 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 475-158 chr20 23285693 23285894 + 3 NA Intergenic Intergenic -64998 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 624-33 chr13 42466060 42466331 + 3 NA intron (NR_135319, intron 3 of 3) intron (NR_135319, intron 3 of 3) 41303 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 527-211 chr5 95025396 95025586 + 3 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) 56375 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 561-72 chr15 72084822 72085014 + 3 NA intron (NM_006901, intron 1 of 41) L1PREC2|LINE|L1 -29340 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 327-144 chr14 31293432 31293563 + 3 NA exon (NM_015473, exon 36 of 36) exon (NM_015473, exon 36 of 36) -85704 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 218-166 chr2 119265880 119266001 + 3 NA TTS (NM_182915) TTS (NM_182915) -16869 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 295-55 chr10 108304822 108305040 + 3 NA Intergenic Intergenic -235638 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 498-142 chr2 215122312 215122528 + 3 NA intron (NR_103740, intron 1 of 54) intron (NR_103740, intron 1 of 54) 16206 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 250-364 chr5 156717580 156717764 + 3 NA intron (NM_001128209, intron 6 of 7) MER74A|LTR|ERVL -132623 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 440-101 chr18 64773068 64773329 + 3 NA Intergenic Intergenic -513143 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 640-89 chr3 194211490 194211724 + 3 NA intron (NR_125403, intron 1 of 2) intron (NR_125403, intron 1 of 2) -5300 NR_125404 100505920 Hs.436654 NR_125403 ENSG00000225742 LINC02036 - long intergenic non-protein coding RNA 2036 ncRNA 420-12 chr1 85797567 85797846 + 3 NA intron (NM_152890, intron 47 of 59) MIR|SINE|MIR -89273 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 500-67 chr12 66115809 66116010 + 3 NA TTS (NM_032338) TTS (NM_032338) 14841 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 326-92 chr11 17715446 17715607 + 3 NA Intergenic Charlie15b|DNA|hAT-Charlie -4045 NM_002478 4654 Hs.181768 NM_002478 ENSG00000129152 MYOD1 MYF3|MYOD|PUM|bHLHc1 myogenic differentiation 1 protein-coding 272-278 chr3 111398207 111398410 + 3 NA Intergenic L1MEc|LINE|L1 -143889 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 746-76 chr8 14828815 14829346 + 3 NA intron (NM_139167, intron 1 of 7) L1PA12|LINE|L1 24430 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 1134-13 chr22 32256541 32257321 + 3 NA intron (NR_149072, intron 2 of 3) L1MB4|LINE|L1 -1584 NM_014227 6527 Hs.130101 NM_014227 ENSG00000100191 SLC5A4 DJ90G24.4|SAAT1|SGLT3 solute carrier family 5 member 4 protein-coding 448-81 chr14 48421208 48421417 + 3 NA Intergenic Intergenic -626298 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 504-169 chr3 61933977 61934210 + 3 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 372522 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 609-136 chr8 92275521 92275873 + 3 NA Intergenic Intergenic -172312 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 842-2 chr1 96692407 96692963 + 3 NA Intergenic Intergenic -28920 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 876-2 chr1 90810698 90811298 + 3 NA intron (NR_135038, intron 1 of 2) MIRc|SINE|MIR 25163 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 467-123 chr19 22469205 22469435 + 3 NA intron (NR_160728, intron 1 of 1) L1MB2|LINE|L1 -46974 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 557-193 chr8 49550034 49550377 + 3 NA Intergenic L1MC|LINE|L1 -38025 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 388-65 chr11 69998454 69998598 + 3 NA Intergenic L1ME2|LINE|L1 65398 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 338-119 chr12 14463489 14463613 + 3 NA intron (NM_181352, intron 9 of 14) L2c|LINE|L2 78270 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 449-27 chr10 19386469 19386643 + 3 NA intron (NM_001142308, intron 26 of 39) intron (NM_001142308, intron 26 of 39) 337755 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 521-36 chr10 106243855 106244133 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 103829 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 643-15 chr11 79995887 79996298 + 3 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -555062 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 343-415 chr5 18496790 18496956 + 3 NA Intergenic L1MDa|LINE|L1 689599 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 832-22 chr20 60063405 60063739 + 3 NA intron (NR_161293, intron 2 of 3) intron (NR_161293, intron 2 of 3) 7647 NR_161291 284756 Hs.335319 NR_126504 ENSG00000176659 C20orf197 - chromosome 20 open reading frame 197 ncRNA 1129-8 chr19 56411768 56412404 + 3 NA intron (NM_001159860, intron 2 of 4) MamRep38|DNA|hAT 7754 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 775-72 chr5 169250286 169250721 + 3 NA intron (NM_003062, intron 2 of 35) MIRc|SINE|MIR 13191 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 890-18 chr2 114291006 114291497 + 3 NA Intergenic Intergenic -151390 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 497-251 chr6 120851413 120851787 + 3 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 482880 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 686-36 chr19 43914843 43915315 + 3 NA exon (NM_003425, exon 10 of 10) exon (NM_003425, exon 10 of 10) -13276 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 1005-19 chr6 40013987 40014496 + 3 NA Intergenic L1MA4|LINE|L1 -79779 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 604-21 chr10 93755880 93756239 + 3 NA Intergenic Intergenic -1750 NR_131777 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 577-25 chr10 33493077 33493441 + 3 NA Intergenic Intergenic -158354 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 589-7 chr1 186096935 186097245 + 3 NA intron (NM_031935, intron 68 of 106) L1MA6|LINE|L1 -199183 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 465-287 chr8 75472635 75472845 + 3 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) 65091 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 1103-15 chr8 107915880 107916509 + 3 NA intron (NM_001282863, intron 4 of 4) MER41-int|LTR|ERV1 165745 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 877-19 chr3 95625839 95626275 + 3 NA Intergenic Intergenic 57136 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 243-276 chr3 59109149 59109290 + 3 NA Intergenic AluSc5|SINE|Alu -59187 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 416-265 chr5 12520658 12520899 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -54079 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 326-159 chr14_KI270722v1_random 172693 172890 + 3 NA NA L1M4b|LINE|L1 NA NA 541-144 chr20 59207278 59207476 + 3 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 16357 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 752-18 chr14 61030017 61030518 + 3 NA intron (NR_033344, intron 5 of 16) (TG)n|Simple_repeat|Simple_repeat -48577 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 301-94 chr12 52480930 52481119 + 3 NA Intergenic L1MC3|LINE|L1 -7219 NM_173086 286887 Hs.709234 NM_173086 ENSG00000170465 KRT6C K6E|KRT6E|PPKNEFD keratin 6C protein-coding 504-181 chr4 19297661 19297952 + 3 NA Intergenic Intergenic -954099 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 421-201 chr3 194844992 194845222 + 3 NA Intergenic Intergenic -76398 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 593-70 chr2 42944675 42945058 + 3 NA Intergenic LTR33B|LTR|ERVL 94677 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 765-23 chr17 69009687 69010055 + 3 NA intron (NM_080283, intron 23 of 38) MER53|DNA|hAT 5157 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 236-189 chr2 184009161 184009247 + 3 NA Intergenic Intergenic -369771 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 791-36 chr2 118189409 118189873 + 3 NA Intergenic Intergenic -3255 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 437-298 chr9 129544990 129545238 + 3 NA Intergenic Intergenic 56454 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 548-250 chr9 86654400 86654749 + 3 NA Intergenic L2a|LINE|L2 292932 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 534-184 chr4 166484867 166485055 + 3 NA Intergenic Intergenic 611724 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 595-86 chr2 104563776 104564132 + 3 NA Intergenic Intergenic -53445 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 319-311 chr22 25636279 25636482 + 3 NA intron (NM_001362778, intron 2 of 19) L1MC4|LINE|L1 71705 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 844-7 chr10 111408651 111409068 + 3 NA Intergenic L1MEh|LINE|L1 294568 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 583-100 chr20 13913534 13913895 + 3 NA intron (NR_073206, intron 6 of 20) intron (NR_073206, intron 6 of 20) 76900 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 383-148 chr16 82369205 82369409 + 3 NA Intergenic Intergenic -199083 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 490-206 chr4 84248670 84248909 + 3 NA intron (NR_125909, intron 4 of 8) intron (NR_125909, intron 4 of 8) 50380 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 545-149 chr3 182579838 182580205 + 3 NA Intergenic Intergenic -72897 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 733-25 chr17 69973959 69974349 + 3 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 12447 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 550-138 chr21 20207286 20207550 + 3 NA Intergenic Intergenic 51267 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 576-137 chr5 91393895 91394258 + 3 NA intron (NR_027435, intron 1 of 2) intron (NR_027435, intron 1 of 2) -10759 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 454-154 chr2 71994433 71994673 + 3 NA Intergenic L3|LINE|CR1 153309 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 625-112 chr8 87839387 87839818 + 3 NA Intergenic L1MB3|LINE|L1 34413 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 505-325 chr9 31412351 31412568 + 3 NA Intergenic Intergenic -30969 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 251-40 chr10 106713428 106713568 + 3 NA intron (NM_001206569, intron 6 of 25) intron (NM_001206569, intron 6 of 25) 451208 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 510-215 chr4 175237124 175237333 + 3 NA Intergenic Intergenic 318870 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 739-57 chr5 41978552 41978869 + 3 NA Intergenic L3|LINE|CR1 53429 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 642-47 chr18 77448564 77448850 + 3 NA Intergenic Intergenic 198859 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 304-555 chr9 108900495 108900662 + 3 NA intron (NM_001330749, intron 16 of 34) intron (NM_001330749, intron 16 of 34) 33546 NM_001330749 8518 Hs.494738 NM_003640 ENSG00000070061 ELP1 DYS|FD|IKAP|IKBKAP|IKI3|TOT1 elongator complex protein 1 protein-coding 526-117 chr2 37900362 37900739 + 3 NA Intergenic LTR1C1|LTR|ERV1 -24687 NR_110012 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 481-17 chr1 238603945 238604235 + 3 NA Intergenic Intergenic -118073 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 409-60 chr12 133083307 133083498 + 3 NA intron (NM_003440, intron 3 of 4) intron (NM_003440, intron 3 of 4) 3199 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 498-275 chr8 103006185 103006437 + 3 NA Intergenic MER21C|LTR|ERVL -14772 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 654-131 chr9 28964656 28965021 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -75883 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 470-152 chr20 16697277 16697565 + 3 NA Intergenic Intergenic -32605 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 430-33 chr10 72959654 72959813 + 3 NA Intergenic Intergenic -4927 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 680-117 chr8 128441178 128441481 + 3 NA intron (NR_121672, intron 2 of 7) L1PA13|LINE|L1 123350 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 709-75 chr5 37958354 37958734 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 10053 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 858-47 chr8 103645055 103645546 + 3 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -143390 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 508-67 chr15 80262370 80262666 + 3 NA TTS (NR_033833) TTS (NR_033833) -10305 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 472-196 chr21 31833129 31833414 + 3 NA Intergenic Intergenic -39749 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 1051-19 chr7 35820598 35821085 + 3 NA intron (NM_001788, intron 1 of 12) L1MB7|LINE|L1 19622 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 954-12 chr12 126139122 126139608 + 3 NA Intergenic Intergenic 43373 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 473-165 chr21 34906443 34906652 + 3 NA intron (NM_001754, intron 2 of 8) MIRb|SINE|MIR -17848 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 538-3 chr1 49571829 49572045 + 3 NA intron (NR_136623, intron 2 of 12) L1PB4|LINE|L1 -99852 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 477-144 chr2 30342827 30343117 + 3 NA Intergenic L1MC5|LINE|L1 -3674 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 848-46 chr8 124810502 124811038 + 3 NA Intergenic L1MEc|LINE|L1 -11215 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 457-213 chr5 179096122 179096291 + 3 NA Intergenic L1MA4|LINE|L1 35833 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 438-39 chr10 109005647 109005866 + 3 NA Intergenic Intergenic 917490 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 400-67 chr12 38545361 38545572 + 3 NA Intergenic Intergenic 228692 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 372-119 chr12 98826481 98826665 + 3 NA intron (NM_001352203, intron 3 of 10) intron (NM_001352203, intron 3 of 10) 68201 NM_001352217 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 429-115 chr17 437947 438135 + 3 NA Intergenic Charlie2a|DNA|hAT-Charlie 7899 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 556-122 chr2 234062903 234063097 + 3 NA intron (NM_006944, intron 4 of 7) intron (NM_006944, intron 4 of 7) 12298 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 528-155 chr3 44722177 44722372 + 3 NA exon (NM_001134442, exon 3 of 3) exon (NM_001134442, exon 3 of 3) -7332 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 572-145 chr5 111331091 111331419 + 3 NA intron (NM_001744, intron 1 of 10) L1MEf|LINE|L1 106871 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 532-181 chr4 31535342 31535766 + 3 NA intron (NR_149121, intron 1 of 2) L1M2|LINE|L1 29010 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 490-74 chr12 77653019 77653248 + 3 NA Intergenic MER103C|DNA|hAT-Charlie -177761 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 565-188 chr9 29066745 29066963 + 3 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 145445 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 556-244 chrX 80722749 80722988 + 3 NA intron (NM_153252, intron 16 of 40) intron (NM_153252, intron 16 of 40) 87009 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 385-244 chr3 86344217 86344432 + 3 NA Intergenic L1MA2|LINE|L1 -137619 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 285-73 chr11 113392626 113392752 + 3 NA intron (NM_178510, intron 1 of 7) intron (NM_178510, intron 1 of 7) 4910 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 773-48 chr8 81386719 81387171 + 3 NA Intergenic L1MA4A|LINE|L1 60494 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 542-60 chr14 81660308 81660584 + 3 NA Intergenic MIRb|SINE|MIR -37385 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 419-264 chr6 163702913 163703082 + 3 NA Intergenic Intergenic -31513 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 399-285 chr7 75675797 75676039 + 3 NA intron (NM_005338, intron 1 of 30) L1MB3|LINE|L1 63023 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 626-121 chr5 171979111 171979487 + 3 NA intron (NM_012300, intron 1 of 12) AluJb|SINE|Alu 27574 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 647-20 chr12 2510213 2510545 + 3 NA intron (NM_199460, intron 8 of 49).2 intron (NM_199460, intron 8 of 49).2 161841 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 398-388 chr9 129532338 129532609 + 3 NA Intergenic L1ME3A|LINE|L1 43813 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 435-149 chr3 22818190 22818372 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 384297 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 237-397 chr8 135283130 135283245 + 3 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 49056 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 500-126 chr2 38400932 38401291 + 3 NA Intergenic L1ME3A|LINE|L1 -22527 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 310-53 chr10 87849921 87850151 + 3 NA Intergenic Intergenic 13401 NM_001126049 100144748 Hs.559820 NM_001126049 ENSG00000227268 KLLN CWS4|KILLIN killin, p53 regulated DNA replication inhibitor protein-coding 424-73 chr14 78493733 78493976 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 90135 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 503-123 chr17 52336079 52336375 + 3 NA Intergenic Intergenic -54295 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 792-40 chr3 89470095 89470675 + 3 NA intron (NM_005233, intron 15 of 16) intron (NM_005233, intron 15 of 16) 362764 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 269-31 chr1 234142937 234143044 + 3 NA intron (NM_173508, intron 2 of 7) L1MA9|LINE|L1 -71221 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 294-440 chr7 64715982 64716197 + 3 NA Intergenic L1PA17|LINE|L1 37025 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 303-148 chr15 91827066 91827283 + 3 NA Intergenic Intergenic -26534 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 827-5 chr10 83739174 83739729 + 3 NA Intergenic MIRb|SINE|MIR -62362 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 1061-8 chr18 43229989 43230553 + 3 NA Intergenic Intergenic 47219 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 405-56 chr12 17589714 17589886 + 3 NA promoter-TSS (NR_146522) promoter-TSS (NR_146522) -722 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 410-241 chr5 62621399 62621641 + 3 NA intron (NM_016338, intron 29 of 29) MER61B|LTR|ERV1 42701 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 214-48 chr10 95779436 95779553 + 3 NA intron (NR_038444, intron 5 of 5) L3|LINE|CR1 23331 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 270-425 chr9 38431744 38431856 + 3 NA Intergenic MER6A|DNA|TcMar-Tigger -7346 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 346-285 chr21 32086065 32086246 + 3 NA intron (NR_038033, intron 1 of 1) intron (NR_038033, intron 1 of 1) 140 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 425-198 chr4 31175631 31175864 + 3 NA intron (NR_125935, intron 1 of 4) Tigger3|DNA|TcMar-Tigger 4603 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 857-31 chr20 31561120 31561750 + 3 NA intron (NM_178580, intron 9 of 12) MIRc|SINE|MIR 11828 NR_046853 100874042 Hs.373741 NR_046853 ENSG00000230613 HM13-AS1 - HM13 antisense RNA 1 ncRNA 471-247 chr7 18747151 18747387 + 3 NA intron (NM_058176, intron 12 of 22) L2c|LINE|L2 237999 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 873-9 chr13 59582660 59583140 + 3 NA Intergenic L2|LINE|L2 -429818 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 520-329 chr9 104378153 104378367 + 3 NA Intergenic Intergenic 108031 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 630-75 chr20 52365093 52365460 + 3 NA Intergenic Intergenic -173291 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 778-37 chr2 116250232 116250790 + 3 NA Intergenic Intergenic 906696 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 805-38 chr5 127580320 127580714 + 3 NA Intergenic L1MA9|LINE|L1 62877 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 604-57 chr16 64021340 64021695 + 3 NA Intergenic Intergenic 1100546 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 592-2 chr1 29775519 29775821 + 3 NA Intergenic L1M4a2|LINE|L1 261942 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 887-22 chr4 175111172 175111643 + 3 NA Intergenic L1M2|LINE|L1 193049 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 288-83 chr12 46282856 46282977 + 3 NA Intergenic L1MA4|LINE|L1 -13873 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 436-230 chr5 12827119 12827390 + 3 NA Intergenic Intergenic 159395 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 520-195 chr3 147557975 147558242 + 3 NA Intergenic Charlie1a|DNA|hAT-Charlie 136781 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 655-66 chr2 224725919 224726331 + 3 NA Intergenic L1MA4|LINE|L1 -140728 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 392-325 chr8 87876311 87876480 + 3 NA Intergenic L1MC3|LINE|L1 -2380 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 395-242 chr3 193452865 193453059 + 3 NA intron (NM_032279, intron 17 of 29) MER20B|DNA|hAT-Charlie -74209 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 456-152 chr2 59455197 59455396 + 3 NA Intergenic Intergenic 237588 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 416-219 chr3 34778305 34778476 + 3 NA Intergenic MIRb|SINE|MIR 615633 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 657-99 chr8 131748518 131748859 + 3 NA Intergenic L1PA10|LINE|L1 -155405 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 545-101 chr19 40029145 40029339 + 3 NA 3' UTR (NM_001005851, exon 5 of 5) 3' UTR (NM_001005851, exon 5 of 5) 26989 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 784-39 chr3 119848294 119848822 + 3 NA intron (NM_002093, intron 10 of 11) L1MB5|LINE|L1 65848 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 483-40 chr11 79152020 79152217 + 3 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 249991 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 583-129 chr4 173005919 173006161 + 3 NA intron (NM_001034845, intron 10 of 12) intron (NM_001034845, intron 10 of 12) -162771 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 435-141 chr21 14755505 14755811 + 3 NA Intergenic L1MB1|LINE|L1 -112551 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 454-157 chr2 81338117 81338400 + 3 NA Intergenic AluSq2|SINE|Alu 128688 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 472-307 chr8 35765184 35765391 + 3 NA intron (NM_001322818, intron 14 of 16) LTR33B|LTR|ERVL -54967 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 558-198 chr7 33700804 33701097 + 3 NA Intergenic Intergenic -203965 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 799-31 chr2 133668564 133669074 + 3 NA Intergenic L1MB7|LINE|L1 -100356 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 900-19 chr2 182024117 182024731 + 3 NA intron (NM_001261425, intron 2 of 5) HAL1b|LINE|L1 38571 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 309-556 chr8 117297331 117297563 + 3 NA Intergenic Intergenic 162452 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 629-43 chr14 72460151 72460509 + 3 NA intron (NM_001370288, intron 6 of 16) MIRb|SINE|MIR -56490 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 331-554 chr9 68928308 68928504 + 3 NA intron (NM_003558, intron 12 of 15) L1MB7|LINE|L1 47435 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 355-222 chr19 52071528 52071756 + 3 NA intron (NM_001369830, intron 2 of 2) L1M4c|LINE|L1 22629 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 1085-9 chr19 51950548 51951181 + 3 NA intron (NR_103847, intron 1 of 2) AluSz|SINE|Alu 1730 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 510-53 chr11 107049924 107050137 + 3 NA Intergenic LTR26|LTR|ERV1 -31554 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 579-7 chr1 200955453 200955819 + 3 NA intron (NR_147176, intron 8 of 15) FLAM_C|SINE|Alu 26692 NR_147176 647215 Hs.576504 NR_147176 ENSG00000233217 MROH3P C1orf81 maestro heat like repeat family member 3, pseudogene pseudo 595-5 chr1 63214147 63214459 + 3 NA intron (NR_038252, intron 4 of 11) L1MB7|LINE|L1 102954 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 492-277 chr9 23070275 23070442 + 3 NA Intergenic L1MA6|LINE|L1 424158 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 1424-6 chr8 138266446 138267349 + 3 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -183352 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 285-427 chr8 121137063 121137265 + 3 NA Intergenic L2a|LINE|L2 -325118 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 530-129 chr2 75341762 75342060 + 3 NA Intergenic L1M5|LINE|L1 -142391 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 665-14 chr10 76605818 76606227 + 3 NA Intergenic L1MEg|LINE|L1 -282022 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 529-151 chr3 190772014 190772350 + 3 NA Intergenic L1MB1|LINE|L1 90512 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 617-5 chr1 94787004 94787386 + 3 NA intron (NR_160783, intron 1 of 3) L1MC|LINE|L1 33037 NR_160784 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 267-369 chr6 55617007 55617163 + 3 NA Intergenic L1PA11|LINE|L1 -37871 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 797-26 chr2 79573812 79574239 + 3 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 50842 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 639-31 chr12 119423035 119423291 + 3 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 88434 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 478-100 chr15 69655481 69655686 + 3 NA intron (NR_126437, intron 3 of 5) L1MB3|LINE|L1 63383 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 480-261 chr6 140406773 140407083 + 3 NA Intergenic L1M4c|LINE|L1 201676 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 286-478 chr9 78510731 78510900 + 3 NA Intergenic HAL1|LINE|L1 213690 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 476-99 chr15 95804317 95804571 + 3 NA Intergenic Intergenic 323397 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 528-72 chr12 124282397 124282738 + 3 NA intron (NM_001347902, intron 3 of 4) intron (NM_001347902, intron 3 of 4) -6597 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 656-68 chr2 229368642 229368922 + 3 NA intron (NM_139072, intron 11 of 12) intron (NM_139072, intron 11 of 12) -97495 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 401-96 chr14 72217540 72217790 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 284138 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 500-244 chr6 64755034 64755356 + 3 NA intron (NM_001292009, intron 22 of 43) L1PB4|LINE|L1 -546223 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 672-21 chr12 118779613 118779853 + 3 NA Intergenic MIRb|SINE|MIR -18054 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 455-111 chr19 28082056 28082216 + 3 NA Intergenic L1MD1|LINE|L1 -288196 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 271-453 chr8 118209990 118210161 + 3 NA intron (NM_001101676, intron 4 of 4) MIRc|SINE|MIR -98256 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 580-169 chr6 144903591 144903939 + 3 NA Intergenic Intergenic 498110 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 324-207 chr16 72626683 72626840 + 3 NA intron (NR_159372, intron 1 of 7) MIR|SINE|MIR 38209 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 528-174 chr4 30387741 30388054 + 3 NA Intergenic Intergenic -332472 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 551-182 chr6 156517669 156517865 + 3 NA Intergenic Intergenic 139017 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 217-72 chr11 81041564 81041670 + 3 NA Intergenic Intergenic -278814 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 600-12 chr10 19106786 19107227 + 3 NA intron (NM_001142308, intron 5 of 39) L1MA6|LINE|L1 58205 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 526-213 chr6 53470116 53470334 + 3 NA Intergenic L1MA3|LINE|L1 74876 NM_001498 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 410-76 chr13 22412446 22412716 + 3 NA Intergenic L1M4|LINE|L1 202296 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 634-35 chr12 10534206 10534662 + 3 NA Intergenic L1M1|LINE|L1 -18945 NR_146456 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 431-51 chr11 6135633 6135937 + 3 NA Intergenic MER34B-int|LTR|ERV1 28101 NM_001005181 196335 Hs.632154 NM_001005181 ENSG00000180919 OR56B4 OR11-67 olfactory receptor family 56 subfamily B member 4 protein-coding 624-50 chr17 19618644 19619033 + 3 NA Intergenic Intergenic -29312 NM_001369137 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 409-208 chr3 175166482 175166764 + 3 NA intron (NM_207015, intron 2 of 13) L2a|LINE|L2 -51381 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 629-40 chr14 65934347 65934575 + 3 NA Intergenic Intergenic 463359 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 287-38 chr1 235948998 235949157 + 3 NA Intergenic Intergenic -65364 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 551-41 chr12 34513486 34513808 + 3 NA Intergenic ALR/Alpha|Satellite|centr 491151 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 435-137 chr20 31666393 31666638 + 3 NA intron (NM_001191, intron 2 of 2) L2c|LINE|L2 28603 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 559-13 chr10 52272409 52272723 + 3 NA intron (NM_001098512, intron 12 of 17) intron (NM_001098512, intron 12 of 17) 41562 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 1055-14 chr4 46483064 46483577 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -93192 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 540-34 chr10 117044345 117044568 + 3 NA intron (NM_001258300, intron 2 of 17) intron (NM_001258300, intron 2 of 17) -38879 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 405-49 chr11 93841919 93842216 + 3 NA intron (NM_001144871, intron 1 of 3) MIR|SINE|MIR 8551 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 589-82 chr21 36560185 36560518 + 3 NA intron (NM_001146077, intron 1 of 2) intron (NM_001146077, intron 1 of 2) 16218 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 511-161 chr21 43832959 43833220 + 3 NA Intergenic LTR33B|LTR|ERVL -20522 NR_026961 284837 Hs.592159 NM_194310 ENSG00000215458 AATBC - apoptosis associated transcript in bladder cancer ncRNA 507-123 chr2 77381642 77381875 + 3 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 140618 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 487-256 chr6 159607735 159608046 + 3 NA Intergenic L1M5|LINE|L1 85351 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 410-333 chr9 80634623 80634805 + 3 NA Intergenic L1MC3|LINE|L1 659691 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 280-386 chr7 57165047 57165147 + 3 NA TTS (NR_030766) TTS (NR_030766) 15059 NR_030766 642006 Hs.562648 NR_030766 GUSBP10 - GUSB pseudogene 10 pseudo 431-219 chr5 38227157 38227340 + 3 NA Intergenic Intergenic -31311 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 519-61 chr14 65371090 65371531 + 3 NA Intergenic L1MC4|LINE|L1 -36127 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 599-128 chr7 154388166 154388473 + 3 NA intron (NR_157196, intron 1 of 25) intron (NR_157196, intron 1 of 25) 83160 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 594-106 chr4 106564883 106565162 + 3 NA Intergenic L2c|LINE|L2 131398 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 685-30 chr15 100448546 100448958 + 3 NA intron (NM_001290341, intron 13 of 13) L1MA4A|LINE|L1 75813 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 493-115 chr18 1260779 1261102 + 3 NA Intergenic L1PA16|LINE|L1 98689 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 720-37 chr18 6696604 6696947 + 3 NA Intergenic L1MC5|LINE|L1 -32941 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 355-150 chr14 45981914 45982050 + 3 NA Intergenic MLT2A2|LTR|ERVL -82177 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 405-228 chr4 67785594 67785916 + 3 NA Intergenic L2|LINE|L2 -29669 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 436-175 chr3 1328937 1329194 + 3 NA intron (NM_001289080, intron 10 of 22) intron (NM_001289080, intron 10 of 22) 236041 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 464-218 chr6 69246817 69247082 + 3 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 549517 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 353-320 chr3 36232697 36232849 + 3 NA Intergenic L1ME3G|LINE|L1 -147714 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 368-317 chr4 10263469 10263592 + 3 NA Intergenic Intergenic -146731 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 739-28 chr19 32838570 32838992 + 3 NA intron (NM_001126335, intron 11 of 12) (TA)n|Simple_repeat|Simple_repeat 30986 NM_001243036 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 369-52 chr10 131557147 131557317 + 3 NA Intergenic Intergenic 232967 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 398-366 chr8 119303896 119304055 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -21196 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 814-19 chr13 37645882 37646340 + 3 NA intron (NM_001135956, intron 7 of 10) MamSINE1|SINE|tRNA-RTE -47267 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 385-2 chr1 50141861 50142139 + 3 NA intron (NM_001324212, intron 2 of 7) intron (NM_001324212, intron 2 of 7) 32167 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 454-257 chr5 45830399 45830638 + 3 NA Intergenic Intergenic -134138 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 360-41 chr10 65774034 65774225 + 3 NA Intergenic L1MA9|LINE|L1 202704 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 480-248 chr6 27451607 27451886 + 3 NA exon (NM_001318893, exon 6 of 6) exon (NM_001318893, exon 6 of 6) 21152 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 939-2 chr1 40495462 40495994 + 3 NA exon (NM_001320179, exon 6 of 6) exon (NM_001320179, exon 6 of 6) -12991 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 798-70 chr9 92847301 92847789 + 3 NA exon (NM_031486, exon 5 of 5) exon (NM_031486, exon 5 of 5) 30423 NM_001354536 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 782-71 chr8 129148900 129149369 + 3 NA Intergenic Intergenic 92106 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 575-28 chr11 37300131 37300395 + 3 NA Intergenic Intergenic -638338 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 605-29 chr14 98169830 98170214 + 3 NA Intergenic Intergenic -191898 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 311-417 chr5 109109385 109109512 + 3 NA intron (NR_146155, intron 17 of 19) L2a|LINE|L2 184842 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 676-41 chr16 9309386 9309824 + 3 NA Intergenic MER5A1|DNA|hAT-Charlie -45983 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 489-258 chr8 118498660 118498834 + 3 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -122254 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 634-161 chr9 107857564 107857841 + 3 NA Intergenic Intergenic -367933 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 379-89 chr14 46009047 46009197 + 3 NA Intergenic Intergenic -55037 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 397-24 chr10 17094414 17094581 + 3 NA intron (NM_001081, intron 14 of 66) L1MA9|LINE|L1 35320 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 763-15 chr13 56612635 56613088 + 3 NA Intergenic Intergenic -528057 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 361-468 chr8 137687075 137687277 + 3 NA Intergenic Intergenic -273588 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 520-314 chr8 136372960 136373155 + 3 NA Intergenic Intergenic -157741 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 673-124 chr8 134431790 134432152 + 3 NA Intergenic MamGypLTR2c|LTR|Gypsy -166100 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 614-27 chr12 129633962 129634427 + 3 NA intron (NM_133448, intron 2 of 8) AluJr|SINE|Alu 269831 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 406-45 chr11 24931323 24931604 + 3 NA intron (NM_001009909, intron 7 of 11) LTR5|LTR|ERVK 434410 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 295-51 chr10 83014177 83014317 + 3 NA Intergenic L2b|LINE|L2 662842 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 451-32 chr10 120148735 120149077 + 3 NA Intergenic Intergenic 190393 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 649-68 chr3 69912768 69913051 + 3 NA intron (NM_198159, intron 2 of 9) L1ME3G|LINE|L1 -23683 NM_001184968 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 630-115 chr6 62091860 62092191 + 3 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 194200 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 177-37 chr12 47181224 47181320 + 3 NA intron (NM_001281429, intron 2 of 2) AluJb|SINE|Alu -6540 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 461-64 chr12 44661733 44661925 + 3 NA intron (NM_006159, intron 14 of 20) (CTCTC)n|Simple_repeat|Simple_repeat 213832 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 727-62 chr5 33135192 33135613 + 3 NA Intergenic L1M3b|LINE|L1 -94333 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 299-180 chr18 51919616 51919723 + 3 NA Intergenic Intergenic -420528 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 550-223 chr7 141399586 141399887 + 3 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -151674 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 481-284 chr7 81123160 81123493 + 3 NA Intergenic MER112|DNA|hAT-Charlie -200937 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 225-189 chr21 31414469 31414625 + 3 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -70193 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 812-23 chr14 88925041 88925446 + 3 NA Intergenic Intergenic 100592 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 394-183 chr2 149684269 149684521 + 3 NA intron (NR_110240, intron 1 of 2) MIR|SINE|MIR -96620 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 449-190 chr4 77284659 77284848 + 3 NA Intergenic Intergenic 127546 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 520-234 chr5 56306992 56307296 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -73814 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 518-311 chr9 29738591 29738831 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -525110 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 498-229 chr5 180974107 180974390 + 3 NA Intergenic L1MA9|LINE|L1 -14598 NM_197975 10917 Hs.225949 NM_006707 ENSG00000168903 BTNL3 BTN9.1|BTNLR butyrophilin like 3 protein-coding 420-129 chr2 32806220 32806374 + 3 NA intron (NM_017735, intron 16 of 19) intron (NM_017735, intron 16 of 19) -19136 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 1068-12 chr21 29636999 29637736 + 3 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 41327 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 457-85 chr16 76171784 76172041 + 3 NA Intergenic L1MB1|LINE|L1 -105489 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 618-143 chr9 122651282 122651507 + 3 NA Intergenic L1MA5A|LINE|L1 -10322 NM_001005236 26737 Hs.567736 NM_001005236 ENSG00000173679 OR1L1 HG23|OR1L2|OR9-27|OR9-C olfactory receptor family 1 subfamily L member 1 protein-coding 882-36 chr4 108500635 108501014 + 3 NA Intergenic Intergenic -56409 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 306-470 chr7 53531600 53531736 + 3 NA Intergenic L1MEc|LINE|L1 280263 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 617-58 chr2 14105189 14105578 + 3 NA Intergenic Intergenic 295575 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 623-7 chr1 209868529 209868780 + 3 NA Intergenic L1MB8|LINE|L1 40682 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 737-41 chr2 11898066 11898450 + 3 NA Intergenic AluSz|SINE|Alu -61272 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 1204-7 chr5 41445129 41445859 + 3 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 65107 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 590-176 chr8 139127008 139127331 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -213128 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 450-153 chr2 155593807 155594019 + 3 NA Intergenic L1MB7|LINE|L1 661018 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 547-41 chr11 112835134 112835463 + 3 NA Intergenic Intergenic -126122 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 723-37 chr2 52754954 52755312 + 3 NA Intergenic Intergenic -52518 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 164-107 chr7 113271955 113272032 + 3 NA Intergenic L1PA17|LINE|L1 -153411 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 395-110 chr15 81136966 81137224 + 3 NA intron (NM_173528, intron 3 of 6) intron (NM_173528, intron 3 of 6) 2825 NM_001353365 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 743-66 chr5 46028600 46029005 + 3 NA Intergenic ALR/Alpha|Satellite|centr -332422 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 616-50 chr15 87112976 87113272 + 3 NA Intergenic L1MC3|LINE|L1 -124698 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 226-6 chr1 70541862 70542017 + 3 NA Intergenic Intergenic 130671 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 909-29 chr8 117771608 117771979 + 3 NA Intergenic Intergenic 149120 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 606-165 chr8 104004871 104005272 + 3 NA intron (NM_001348500, intron 15 of 20) intron (NM_001348500, intron 15 of 20) 185851 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 294-376 chr5 58338393 58338603 + 3 NA Intergenic Intergenic 121588 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 594-102 chr4 78574149 78574485 + 3 NA intron (NM_005139, intron 3 of 12) AluJb|SINE|Alu 22547 NM_005139 306 Hs.480042 NM_005139 ENSG00000138772 ANXA3 ANX3 annexin A3 protein-coding 463-269 chr7 64442430 64442590 + 3 NA Intergenic L1MA6|LINE|L1 8817 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 351-422 chr6 112012833 112013073 + 3 NA Intergenic Intergenic -41122 NM_003880 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 680-108 chr7 19327867 19328129 + 3 NA Intergenic Intergenic -182577 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 377-432 chrUn_KI270442v1 108864 109017 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 460-304 chr9 80863064 80863296 + 3 NA Intergenic L1MEc|LINE|L1 826355 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 438-38 chr10 96437023 96437188 + 3 NA intron (NM_012465, intron 3 of 20) intron (NM_012465, intron 3 of 20) 76821 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 408-150 chr2 8323814 8324007 + 3 NA intron (NR_152741, intron 2 of 9) intron (NR_152741, intron 2 of 9) 4509 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 421-264 chr6 133190831 133191061 + 3 NA Intergenic Intergenic -50411 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 481-82 chr13 89860714 89861002 + 3 NA Intergenic Intergenic 258859 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 449-15 chr1 186821397 186821609 + 3 NA Intergenic Intergenic -7397 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 487-140 chr2 56499336 56499568 + 3 NA Intergenic L1PA15|LINE|L1 -313682 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 220-154 chr2 21821710 21821851 + 3 NA Intergenic Intergenic -111128 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 929-23 chr21 27499651 27500189 + 3 NA Intergenic Intergenic -222459 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 563-126 chr3 89169540 89169795 + 3 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 62046 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 463-51 chr11 23144451 23144672 + 3 NA Intergenic Intergenic 274629 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 796-21 chr16 80007374 80007864 + 3 NA Intergenic Intergenic 212370 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 699-27 chr13 66619068 66619468 + 3 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) -205901 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 459-125 chr19 36745229 36745419 + 3 NA 3' UTR (NM_001193552, exon 5 of 5) 3' UTR (NM_001193552, exon 5 of 5) 27483 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 539-56 chr12 116249048 116249382 + 3 NA intron (NM_015335, intron 1 of 30) L1MEc|LINE|L1 27971 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 688-93 chr6 25662285 25662577 + 3 NA intron (NM_006998, intron 3 of 10) intron (NM_006998, intron 3 of 10) 10216 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 418-252 chr7 3996788 3996991 + 3 NA intron (NM_152744, intron 14 of 44) intron (NM_152744, intron 14 of 44) -132796 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 205-158 chr2 184711385 184711484 + 3 NA intron (NM_194250, intron 1 of 3) L1MB1|LINE|L1 112905 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 912-4 chr1 184681949 184682435 + 3 NA Intergenic L1MEb|LINE|L1 72666 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 398-162 chr2 58452718 58452950 + 3 NA Intergenic Intergenic -67919 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 539-103 chr2 14818953 14819243 + 3 NA Intergenic L2b|LINE|L2 186381 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 578-40 chr11 100817421 100817628 + 3 NA intron (NM_001367945, intron 4 of 25) L2c|LINE|L2 -116750 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 393-243 chr4 78962525 78962740 + 3 NA Intergenic Intergenic -9116 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 561-132 chr3 82446905 82447113 + 3 NA intron (NR_147146, intron 4 of 8) MLT1K|LTR|ERVL-MaLR 460867 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 181-145 chr7 9790720 9790830 + 3 NA Intergenic Intergenic 156505 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 929-20 chr2 24542313 24542929 + 3 NA intron (NM_001362952, intron 1 of 23) Charlie18a|DNA|hAT-Charlie -41856 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 406-216 chr4 157670650 157670853 + 3 NA Intergenic L1MC4|LINE|L1 98261 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 231-350 chr8 77759788 77759940 + 3 NA Intergenic L1M4|LINE|L1 309167 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 605-122 chr8 118645702 118645922 + 3 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -23849 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 523-249 chr6 124272472 124272759 + 3 NA intron (NM_001300737, intron 2 of 7) THE1D-int|LTR|ERVL-MaLR -10390 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 552-36 chr11 125641500 125641840 + 3 NA intron (NM_001274, intron 8 of 12) L2a|LINE|L2 15314 NM_001274 1111 Hs.24529 NM_001274 ENSG00000149554 CHEK1 CHK1 checkpoint kinase 1 protein-coding 615-84 chr3 34002599 34002970 + 3 NA Intergenic Intergenic 204154 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 679-53 chr2 132499532 132499862 + 3 NA intron (NM_001508, intron 1 of 1) L1PB1|LINE|L1 65986 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 495-178 chr4 65721457 65721765 + 3 NA Intergenic Intergenic -51116 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 550-96 chr18 23096441 23096711 + 3 NA Intergenic Intergenic -37988 NR_023359 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 509-273 chrX 58509675 58509884 + 3 NA Intergenic ALR/Alpha|Satellite|centr -599146 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 595-141 chr6 55305706 55305915 + 3 NA Intergenic L1ME4a|LINE|L1 -21659 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 378-193 chr18 47705044 47705226 + 3 NA Intergenic L1M6|LINE|L1 225524 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 657-102 chr8 134367965 134368292 + 3 NA Intergenic MIR|SINE|MIR -229943 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 529-196 chr6 81298727 81299062 + 3 NA Intergenic Intergenic 453787 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 473-62 chr12 77074144 77074394 + 3 NA Intergenic AluJr4|SINE|Alu -8700 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 794-26 chr20 33948803 33949112 + 3 NA Intergenic Intergenic -44954 NM_016732 22913 Hs.136947 NM_007367 ENSG00000125970 RALY HNRPCL2|P542 RALY heterogeneous nuclear ribonucleoprotein protein-coding 526-265 chr9 107202680 107202997 + 3 NA Intergenic Intergenic -80441 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 460-219 chr4 43966421 43966687 + 3 NA Intergenic AluSc5|SINE|Alu -50307 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 1132-8 chr21 30041528 30042024 + 3 NA Intergenic L1M4|LINE|L1 -101724 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 424-166 chr21 34011731 34011967 + 3 NA Intergenic L1MC3|LINE|L1 35467 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 821-58 chrX 65085233 65085802 + 3 NA Intergenic AluJr|SINE|Alu -50776 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 474-109 chr17 55530264 55530540 + 3 NA Intergenic Intergenic -108567 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 415-191 chr4 30661211 30661485 + 3 NA Intergenic Intergenic -59021 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 488-194 chr4 102381487 102381790 + 3 NA Intergenic AluSg|SINE|Alu -36156 NM_001135146 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 201-18 chr1 216403264 216403355 + 3 NA intron (NM_206933, intron 3 of 71) L1MD2|LINE|L1 20087 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 1060-11 chr2 150901533 150902132 + 3 NA Intergenic Intergenic 272935 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 383-202 chr2 166567608 166567764 + 3 NA Intergenic L1MA8|LINE|L1 -80715 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 709-65 chr4 36980255 36980647 + 3 NA Intergenic L2a|LINE|L2 -21328 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 618-133 chr8 122260560 122260957 + 3 NA Intergenic MER58A|DNA|hAT-Charlie 307886 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 356-433 chr6 130342926 130343089 + 3 NA intron (NM_001258275, intron 1 of 13) intron (NM_001258275, intron 1 of 13) 22861 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 344-306 chr3 28044686 28044899 + 3 NA Intergenic L1PA16|LINE|L1 -196827 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 754-87 chrX 76968273 76968609 + 3 NA intron (NR_110403, intron 1 of 3) intron (NR_110403, intron 1 of 3) 37060 NR_029905 442899 NR_029905 ENSG00000207995 MIR325 MIRN325|hsa-mir-325 microRNA 325 ncRNA 414-208 chr3 71022779 71022942 + 3 NA intron (NR_146142, intron 11 of 19) intron (NR_146142, intron 11 of 19) 42064 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 429-59 chr11 99214743 99214973 + 3 NA intron (NM_001243270, intron 1 of 23) L3|LINE|CR1 193909 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 531-231 chr7 92930345 92930649 + 3 NA Intergenic L1M3c|LINE|L1 -93870 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 467-160 chr21 25022369 25022632 + 3 NA intron (NR_046198, intron 2 of 3) MIR|SINE|MIR 181950 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 530-252 chr8 90975304 90975557 + 3 NA intron (NM_001363275, intron 3 of 5) L1ME1|LINE|L1 9647 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 418-244 chr6 126401966 126402114 + 3 NA intron (NR_104462, intron 2 of 3) L1MCa|LINE|L1 61925 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 522-46 chr11 55850866 55851178 + 3 NA Intergenic Intergenic 12270 NM_001005496 390144 Hs.554527 NM_001005496 ENSG00000205029 OR5D16 OR11-154 olfactory receptor family 5 subfamily D member 16 protein-coding 929-28 chr5 112424736 112425296 + 3 NA Intergenic L1M5|LINE|L1 5433 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 983-17 chr5 127272134 127272649 + 3 NA Intergenic L1PA11|LINE|L1 -18373 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 643-103 chr6 80091410 80091858 + 3 NA Intergenic Intergenic -14976 NM_000056 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 599-80 chr3 36585837 36586190 + 3 NA Intergenic L1MA2|LINE|L1 153848 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 358-100 chr12 126775481 126775638 + 3 NA Intergenic Intergenic -3297 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 521-102 chr17 65266275 65266475 + 3 NA Intergenic Intergenic 129005 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 345-4 chr1 23739722 23739888 + 3 NA Intergenic AluSx|SINE|Alu -3561 NM_003198 6924 Hs.15535 NM_003198 ENSG00000011007 ELOA SIII|SIII p110|TCEB3|TCEB3A elongin A protein-coding 294-46 chr10 81534180 81534302 + 3 NA Intergenic Intergenic -340953 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 681-26 chr16 75122946 75123338 + 3 NA Intergenic AluSx|SINE|Alu -6370 NM_153486 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 555-126 chr3 40874424 40874760 + 3 NA Intergenic MLT1H|LTR|ERVL-MaLR -324913 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 384-98 chr13 72974768 72975033 + 3 NA intron (NM_006346, intron 16 of 17) L1ME1|LINE|L1 -80076 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 519-209 chr7 13499122 13499568 + 3 NA Intergenic Intergenic 487169 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 790-3 chr1 228827820 228828362 + 3 NA Intergenic Intergenic 92612 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 279-4 chr1 9355014 9355118 + 3 NA intron (NM_025106, intron 1 of 2) intron (NM_025106, intron 1 of 2) 62172 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 461-253 chr7 56672304 56672517 + 3 NA Intergenic L1M1|LINE|L1 -134280 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 359-382 chr5 7204980 7205227 + 3 NA Intergenic MLT2A2|LTR|ERVL 64251 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 679-26 chr12 59690140 59690536 + 3 NA intron (NR_073055, intron 1 of 6) MER34C|LTR|ERV1 968 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 422-277 chr7 35383248 35383444 + 3 NA Intergenic Intergenic 69491 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 756-41 chr3 95605761 95606130 + 3 NA Intergenic Intergenic 77248 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 557-101 chr2 107331407 107331624 + 3 NA intron (NR_049853, intron 1 of 3) L1PA16|LINE|L1 18010 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 490-236 chr6 24924666 24924939 + 3 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 11158 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 479-44 chr12 94796574 94796782 + 3 NA Intergenic L1ME3|LINE|L1 -37720 NR_030171 574449 NR_030171 ENSG00000283998 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 866-29 chr3 177329666 177330091 + 3 NA Intergenic Intergenic 35436 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 594-139 chr7 43355164 43355485 + 3 NA intron (NM_001287059, intron 4 of 27) L1MA4|LINE|L1 167218 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 807-21 chr19 12522537 12523062 + 3 NA Intergenic Intergenic 28683 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 479-64 chr14 68629857 68630076 + 3 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -1179 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 659-36 chr16 78977972 78978362 + 3 NA intron (NM_001291997, intron 7 of 7) L1MB5|LINE|L1 622570 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 949 chr1 107517834 107518273 + 3 NA Intergenic Intergenic 170446 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 584-9 chr1 79609543 79609910 + 3 NA Intergenic MER101-int|LTR|ERV1 -602996 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 490-255 chr6 166018131 166018444 + 3 NA Intergenic L1MCa|LINE|L1 -30248 NR_026861 90632 Hs.31917 NR_026860 ENSG00000112541 LINC00473 C6orf176|LNC473|bA142J11.1 long intergenic non-protein coding RNA 473 ncRNA 659-86 chr5 15404448 15404892 + 3 NA Intergenic L1PA2|LINE|L1 -95510 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 276-325 chr4 31455452 31455570 + 3 NA Intergenic Intergenic -51033 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 299-342 chr4 156487669 156487829 + 3 NA Intergenic Intergenic 484050 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 472-314 chr8 77672592 77672800 + 3 NA Intergenic Intergenic 221999 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 1239-3 chr2 200591795 200592274 + 3 NA intron (NM_001159, intron 1 of 34) L2c|LINE|L2 6020 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 478-22 chr10 29294256 29294452 + 3 NA intron (NM_032517, intron 3 of 4) intron (NM_032517, intron 3 of 4) 5284 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 1097-9 chr3 13906507 13907123 + 3 NA Intergenic L1PA11|LINE|L1 -26241 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 736-89 chr8 136039807 136040346 + 3 NA Intergenic Intergenic -490722 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 459-157 chr20 9707962 9708284 + 3 NA intron (NM_020341, intron 3 of 10) L2c|LINE|L2 130953 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 656-72 chr20 42699583 42700004 + 3 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 14310 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 465-289 chr8 91690275 91690469 + 3 NA Intergenic L1MA9|LINE|L1 327308 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 1261-4 chr4 61762376 61763352 + 3 NA intron (NM_001371343, intron 8 of 23) MER31-int|LTR|ERV1 398901 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 492-210 chr5 76580542 76580864 + 3 NA intron (NM_006633, intron 5 of 35) L1MC4|LINE|L1 28266 NR_134278 101929109 Hs.665172 NR_134278 ENSG00000249713 LOC101929109 - uncharacterized LOC101929109 ncRNA 888-2 chr10 111912597 111913186 + 3 NA Intergenic Intergenic 270874 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 661-56 chr2 234120604 234120994 + 3 NA Intergenic Intergenic 70097 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 481-50 chr11 31282045 31282321 + 3 NA intron (NM_181807, intron 7 of 8) L1MEf|LINE|L1 87556 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 295 chr1 6112622 6112780 + 3 NA intron (NM_015557, intron 34 of 41) intron (NM_015557, intron 34 of 41) 66813 NM_001199863 8514 Hs.440497 NM_003636 ENSG00000069424 KCNAB2 AKR6A5|HKvbeta2|HKvbeta2.1|HKvbeta2.2|KCNA2B|KV-BETA-2 potassium voltage-gated channel subfamily A regulatory beta subunit 2 protein-coding 547-93 chr2 9054645 9054944 + 3 NA Intergenic Intergenic -51110 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 813-49 chr8 75591672 75592350 + 3 NA Intergenic L1PA15|LINE|L1 52043 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 486-164 chr2 225742406 225742623 + 3 NA Intergenic Intergenic 341628 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 682-52 chr2 101883930 101884272 + 3 NA intron (NM_145686, intron 26 of 30) intron (NM_145686, intron 26 of 30) -99364 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 351-46 chr10 58742699 58742834 + 3 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 27751 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 131-62 chr5 16517393 16517443 + 3 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -8420 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 372-500 chr8 136573086 136573299 + 3 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 42394 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 358-189 chr2 11113962 11114138 + 3 NA intron (NR_040080, intron 6 of 8) intron (NR_040080, intron 6 of 8) 18126 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 544-64 chr14 61836879 61837073 + 3 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 24273 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 450-204 chr3 119510217 119510471 + 3 NA intron (NM_016589, intron 4 of 6) intron (NM_016589, intron 4 of 6) 11797 NM_016589 51300 Hs.477287 NM_016589 ENSG00000113845 TIMMDC1 C3orf1|MC1DN31 translocase of inner mitochondrial membrane domain containing 1 protein-coding 893-43 chr8 116900232 116900778 + 3 NA Intergenic L1MA4|LINE|L1 -25639 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 595-131 chr5 46280381 46280693 + 3 NA Intergenic ALR/Alpha|Satellite|centr -584157 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 285-295 chr4 6485064 6485262 + 3 NA intron (NM_001206994, intron 2 of 9) L1MEc|LINE|L1 -12549 NM_001363388 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 619-120 chr7 49455101 49455464 + 3 NA Intergenic Intergenic -318356 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 224-217 chr4 30841941 30842088 + 3 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 121645 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 914 chr1 5374566 5375076 + 3 NA Intergenic Intergenic 487920 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 771-71 chr5 84974818 84975146 + 3 NA Intergenic L1P4|LINE|L1 -590102 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 742-32 chr16 86645016 86645301 + 3 NA Intergenic MIRc|SINE|MIR 66649 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 627-34 chr15 65712885 65713132 + 3 NA intron (NM_005848, intron 14 of 31) L1MC4|LINE|L1 6324 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 494-19 chr10 5486791 5486979 + 3 NA Intergenic Intergenic 12685 NM_017422 51806 Hs.180142 NM_017422 ENSG00000178372 CALML5 CLSP calmodulin like 5 protein-coding 520-19 chr1 179654210 179654573 + 3 NA intron (NM_001199085, intron 14 of 17) intron (NM_001199085, intron 14 of 17) 48164 NM_001199092 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 562-83 chr18 28471680 28471867 + 3 NA Intergenic Intergenic -294643 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 483-96 chr18 11196386 11196589 + 3 NA Intergenic L1M5|LINE|L1 -47725 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 525-102 chr2 3847326 3847547 + 3 NA 3' UTR (NM_001365580, exon 10 of 10) 3' UTR (NM_001365580, exon 10 of 10) 126596 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 465-311 chr9 2548281 2548585 + 3 NA intron (NR_015375, intron 1 of 3) L1ME4a|LINE|L1 -73354 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 428-132 chr2 101326611 101326758 + 3 NA Intergenic Charlie10a|DNA|hAT-Charlie 17234 NR_049881 100847007 NR_049881 ENSG00000264857 MIR5696 - microRNA 5696 ncRNA 355-393 chr5 29327677 29327835 + 3 NA Intergenic Intergenic 68220 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 792-36 chr21 14140606 14140947 + 3 NA intron (NM_001303001, intron 7 of 7) intron (NM_001303001, intron 7 of 7) 66173 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 601-69 chr2 3965909 3966205 + 3 NA intron (NR_037881, intron 1 of 2) intron (NR_037881, intron 1 of 2) 7975 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 541-186 chr5 83536368 83536703 + 3 NA intron (NR_136215, intron 1 of 2) intron (NR_136215, intron 1 of 2) 25779 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 503-31 chr10 58101965 58102301 + 3 NA Intergenic Intergenic 165761 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 290-256 chr21 21965578 21965710 + 3 NA Intergenic L1PA15|LINE|L1 132815 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 802-73 chr9 34872035 34872436 + 3 NA Intergenic L1PA2|LINE|L1 23529 NM_001309427 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 487-145 chr2 88154399 88154590 + 3 NA Intergenic L1MA5|LINE|L1 -15801 NM_001244678 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 675-68 chr4 166376546 166376927 + 3 NA Intergenic L1M1|LINE|L1 503499 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 510-173 chr21 23914727 23914941 + 3 NA Intergenic MIR|SINE|MIR 406543 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 465-213 chr5 5810311 5810577 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 387767 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 459-309 chr8 130756340 130756573 + 3 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 284453 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 652-73 chr20 45674538 45674912 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -4486 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 555-87 chr2 23155589 23155849 + 3 NA Intergenic MER20B|DNA|hAT-Charlie -229460 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 730-59 chr5 105178725 105179057 + 3 NA Intergenic Intergenic 79417 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 509-10 chr1 107678631 107678998 + 3 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 9685 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 439-71 chr12 46225787 46226053 + 3 NA intron (NM_030674, intron 5 of 16) L1MC5|LINE|L1 40596 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 504-135 chr2 116829589 116829905 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -984944 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 461-251 chr7 48330869 48331092 + 3 NA intron (NM_152701, intron 27 of 61) intron (NM_152701, intron 27 of 61) 159522 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 499-277 chr8 142805766 142805997 + 3 NA Intergenic Intergenic -19342 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 family member D protein-coding 509-229 chr7 13645482 13645787 + 3 NA Intergenic Intergenic 340880 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 667-113 chr8 85101241 85101681 + 3 NA Intergenic L1MA4A|LINE|L1 -5777 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 524-214 chr5 178384282 178384504 + 3 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -151571 NR_103510 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 508-113 chr2 114545224 114545593 + 3 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 83831 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 604-85 chr2 108992395 108992749 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -3352 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 446-140 chr2 4536452 4536697 + 3 NA Intergenic Intergenic 119648 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 465-125 chr2 33620832 33621075 + 3 NA Intergenic Intergenic -21591 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 581-81 chr2 104617442 104617902 + 3 NA Intergenic Intergenic -107163 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 230-67 chr11 109493756 109493913 + 3 NA Intergenic Intergenic 71644 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 355-494 chr8 57374503 57374665 + 3 NA Intergenic Intergenic 30797 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 647-5 chr1 87207554 87207890 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -4947 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 685-61 chr20 57967927 57968287 + 3 NA Intergenic Intergenic -35797 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 496-5 chr1 33691544 33691841 + 3 NA intron (NM_052896, intron 25 of 69) intron (NM_052896, intron 25 of 69) -168783 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 596-123 chr3 103404665 103404967 + 3 NA Intergenic Intergenic 119300 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 394-190 chr2 179808633 179808795 + 3 NA intron (NR_148056, intron 1 of 9) intron (NR_148056, intron 1 of 9) 52194 NR_031659 100302172 NR_031659 ENSG00000221240 MIR1258 MIRN1258|hsa-mir-1258|mir-1258 microRNA 1258 ncRNA 486-128 chr19 58099256 58099544 + 3 NA intron (NM_001145542, intron 1 of 6) L1MD2|LINE|L1 -1037 NM_001145543 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 588-131 chr6 40699090 40699351 + 3 NA Intergenic Intergenic -111856 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 333-589 chr8 133325276 133325392 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR -28030 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 362-214 chr2 67077053 67077291 + 3 NA Intergenic L2a|LINE|L2 -9274 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 674-55 chr22 22041242 22041563 + 3 NA intron (NR_135291, intron 1 of 6) intron (NR_135291, intron 1 of 6) 2532 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 301-346 chr5 19995414 19995544 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -7279 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 323-365 chr4 52832960 52833106 + 3 NA Intergenic LTR16A1|LTR|ERVL -29284 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 328-627 chrX 43112434 43112546 + 3 NA Intergenic Intergenic -64504 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 295-294 chr3 60191521 60191709 + 3 NA intron (NM_001320900, intron 6 of 9) L1M5|LINE|L1 -110706 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 297-305 chr3 154531515 154531661 + 3 NA Intergenic L1MEd|LINE|L1 -101398 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 383-232 chr21 27355564 27355718 + 3 NA Intergenic L1MD2|LINE|L1 -366738 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 626-80 chr2 237651720 237652158 + 3 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) 24352 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 403-86 chr13 66223507 66223753 + 3 NA Intergenic MIR|SINE|MIR 5380 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 574-43 chr15 61613661 61614002 + 3 NA Intergenic L1MB1|LINE|L1 -116087 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 549-16 chr1 229145867 229146088 + 3 NA Intergenic Intergenic 28824 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 492-258 chr8 76385266 76385530 + 3 NA Intergenic Intergenic -21256 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 656-67 chr2 193240658 193241080 + 3 NA Intergenic Intergenic 491024 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 388-226 chr3 68231146 68231338 + 3 NA intron (NM_001252216, intron 2 of 4) L1ME2z|LINE|L1 226995 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 501-159 chr3 30461847 30462027 + 3 NA Intergenic Intergenic -56931 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 504-164 chr3 35284995 35285260 + 3 NA intron (NR_110817, intron 2 of 3) L1M2|LINE|L1 108896 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 567-205 chr9 112999854 113000200 + 3 NA intron (NM_001101338, intron 3 of 4) intron (NM_001101338, intron 3 of 4) 12165 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 580-160 chr6 5769126 5769432 + 3 NA intron (NM_006567, intron 6 of 6) L1MB5|LINE|L1 -74007 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 723-5 chr1 113995159 113995575 + 3 NA Intergenic L1M2c|LINE|L1 15893 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 455-174 chr3 151922053 151922236 + 3 NA intron (NR_110203, intron 1 of 2) MLT1D|LTR|ERVL-MaLR 6031 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 813-27 chr3 71476260 71476587 + 3 NA intron (NR_146142, intron 3 of 19) (TTTC)n|Simple_repeat|Simple_repeat 65666 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 614-38 chr16 81348725 81348994 + 3 NA intron (NM_022041, intron 1 of 10) HAL1|LINE|L1 33893 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 392-33 chr10 107786394 107786526 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 282833 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 1150-5 chr2 79178432 79179036 + 3 NA Intergenic Intergenic -18981 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 391-354 chr8 88274160 88274319 + 3 NA intron (NM_005941, intron 1 of 9) L2|LINE|L2 53244 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 550-132 chr20 22704857 22705132 + 3 NA Intergenic L1MC1|LINE|L1 -19650 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 575-44 chr12 127416459 127416782 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -76548 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 452-149 chr2 221704955 221705199 + 3 NA Intergenic Intergenic -130875 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 515-232 chr6 44017807 44018038 + 3 NA intron (NR_125864, intron 1 of 4) AluSc|SINE|Alu -14272 NR_125865 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 464 chr1 34075514 34075794 + 3 NA intron (NM_052896, intron 2 of 69) intron (NM_052896, intron 2 of 69) 89620 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 800-68 chr9 24654471 24655020 + 3 NA Intergenic L1MC|LINE|L1 -108848 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 1068-16 chr5 59239805 59240598 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 35914 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 669-35 chr16 52016319 52016780 + 3 NA Intergenic Intergenic 57386 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 822-44 chr4 101914601 101915232 + 3 NA intron (NM_017935, intron 6 of 16) Tigger17a|DNA|TcMar-Tigger 101074 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 684-62 chr2 204566480 204566759 + 3 NA intron (NM_205863, intron 1 of 21) Charlie1|DNA|hAT-Charlie 21144 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 501-85 chr18 8079364 8079664 + 3 NA intron (NM_002845, intron 9 of 30) intron (NM_002845, intron 9 of 30) 287520 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 415-60 chr12 72147472 72147735 + 3 NA Intergenic Intergenic -125146 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 424-156 chr20 12473860 12474037 + 3 NA Intergenic L1MC3|LINE|L1 463015 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 661-69 chr3 102693732 102694171 + 3 NA Intergenic MER34-int|LTR|ERV1 258936 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 531-187 chr4 175726926 175727252 + 3 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 60587 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 870-3 chr11 13201190 13201715 + 3 NA Intergenic L1PA16|LINE|L1 -75200 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 386-93 chr14 48279565 48279789 + 3 NA Intergenic Intergenic -484663 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 369-222 chr2 177752485 177752706 + 3 NA intron (NM_001077197, intron 11 of 20) intron (NM_001077197, intron 11 of 20) 79273 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 711-44 chr22 49465458 49465829 + 3 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 77823 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 537-29 chr10 72778178 72778399 + 3 NA intron (NR_073062, intron 3 of 9) L1MA4|LINE|L1 57259 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 558 chr1 14417046 14417375 + 3 NA intron (NR_149058, intron 1 of 4) intron (NR_149058, intron 1 of 4) 2763 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 457-140 chr20 28785853 28786099 + 3 NA Intergenic ALR/Alpha|Satellite|centr -183311 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 251-196 chr2 209066023 209066164 + 3 NA Intergenic L1MD2|LINE|L1 -357954 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 778-24 chr14 83927517 83927916 + 3 NA Intergenic L1MA4A|LINE|L1 1285084 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 481-247 chr5 39794136 39794374 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -258036 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 493-26 chr10 28945538 28945735 + 3 NA Intergenic L1MD2|LINE|L1 99228 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 638-155 chr8 81145548 81145875 + 3 NA Intergenic Intergenic -33643 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 329-479 chr5 140772732 140772878 + 3 NA Intergenic L1MD1|LINE|L1 -13331 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 486-94 chr15 24022123 24022416 + 3 NA intron (NR_126392, intron 4 of 5) L1MC3|LINE|L1 47122 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 755-30 chr19 33570756 33571196 + 3 NA Intergenic L1MB4|LINE|L1 -49185 NM_001166056 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 943-2 chr10 10357700 10358199 + 3 NA Intergenic L1MEf|LINE|L1 104400 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 613-46 chr18 10232830 10233316 + 3 NA Intergenic Intergenic 181297 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 489-76 chr14 66164055 66164256 + 3 NA Intergenic L1ME3A|LINE|L1 -322216 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 700-77 chr5 21827241 21827612 + 3 NA intron (NM_004061, intron 8 of 14) intron (NM_004061, intron 8 of 14) -57028 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 717-15 chr10 54320186 54320721 + 3 NA intron (NM_001142767, intron 6 of 30) intron (NM_001142767, intron 6 of 30) -165777 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 517-186 chr4 16056453 16056844 + 3 NA intron (NM_001371408, intron 2 of 24) L2a|LINE|L2 19470 NM_001145851 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 378-130 chr14 44716770 44716944 + 3 NA Intergenic Intergenic 82269 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 731-73 chr8 72428136 72428564 + 3 NA Intergenic MER63D|DNA|hAT-Blackjack -108875 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 507-174 chr3 190070361 190070690 + 3 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 50372 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 170-40 chr13 84692609 84692718 + 3 NA Intergenic Intergenic -90991 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 297-495 chr8 135129442 135129576 + 3 NA Intergenic L1ME3A|LINE|L1 -104622 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 775-78 chr6 118947322 118947777 + 3 NA Intergenic L1MA3|LINE|L1 -12387 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 302-27 chr1 192428929 192429108 + 3 NA Intergenic L1MA4A|LINE|L1 112026 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 329-115 chr12 23497364 23497551 + 3 NA Intergenic Intergenic 87129 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 445-227 chr5 163341259 163341509 + 3 NA Intergenic Intergenic -96187 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 539-200 chr7 143102614 143102929 + 3 NA intron (NM_001130026, intron 9 of 10) L1MEg|LINE|L1 -29306 NM_002652 5304 Hs.99949 NM_002652 ENSG00000159763 PIP GCDFP-15|GCDFP15|GPIP4 prolactin induced protein protein-coding 1258-6 chr5 7219406 7220279 + 3 NA Intergenic Tigger5b|DNA|TcMar-Tigger 49512 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 1151-8 chr20 8390606 8391110 + 3 NA intron (NM_182734, intron 3 of 32) MIR|SINE|MIR 142154 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 373-133 chr15 79002960 79003148 + 3 NA intron (NM_001145648, intron 15 of 26) intron (NM_001145648, intron 15 of 26) 2606 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 528-67 chr12 102941663 102941946 + 3 NA intron (NM_001354304, intron 1 of 13) L1PA15|LINE|L1 -15870 NM_004316 429 Hs.703025 NM_004316 ENSG00000139352 ASCL1 ASH1|HASH1|MASH1|bHLHa46 achaete-scute family bHLH transcription factor 1 protein-coding 570-126 chr21 16819786 16820145 + 3 NA Intergenic Intergenic 229728 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 853-31 chr6 9014135 9014573 + 3 NA Intergenic Intergenic 362145 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 450-185 chr3 1009681 1009997 + 3 NA Intergenic Intergenic -83185 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 315-262 chr2 184815444 184815651 + 3 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 217018 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 395-143 chr18 31841725 31841917 + 3 NA intron (NM_014939, intron 26 of 28) intron (NM_014939, intron 26 of 28) -80941 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 307-513 chr9 35996718 35996932 + 3 NA Intergenic Intergenic -38671 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 260-68 chr10 119926050 119926166 + 3 NA non-coding (NR_037771, exon 12 of 18) non-coding (NR_037771, exon 12 of 18) -32405 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 518-49 chr11 9022069 9022282 + 3 NA intron (NM_001367977, intron 21 of 22) L2|LINE|L2 -18174 NM_020645 56675 Hs.523467 NM_020645 ENSG00000175352 NRIP3 C11orf14|NY-SAR-105 nuclear receptor interacting protein 3 protein-coding 503-276 chr8 28488340 28488643 + 3 NA intron (NM_001258211, intron 1 of 7) AluJo|SINE|Alu 1738 NM_172366 157574 Hs.741522 NM_172366 ENSG00000214050 FBXO16 FBX16 F-box protein 16 protein-coding 409-166 chr20 7802312 7802492 + 3 NA Intergenic Intergenic 138056 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 1082-9 chr2 56765199 56765810 + 3 NA Intergenic Intergenic -579734 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 654-49 chr17 78553625 78553967 + 3 NA intron (NM_173628, intron 14 of 80) MADE1|DNA|TcMar-Mariner 23598 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 392-342 chr8 139613858 139614077 + 3 NA intron (NR_104210, intron 2 of 3) intron (NR_104210, intron 2 of 3) 89156 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 537-19 chr1 222251531 222251785 + 3 NA Intergenic Intergenic -273138 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 268-445 chrX 81330472 81330577 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 128422 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 450-3 chr1 42096628 42096815 + 3 NA Intergenic MSTB1|LTR|ERVL-MaLR -56689 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 386-347 chr8 64339252 64339425 + 3 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 29220 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 446-309 chr8 107198616 107198848 + 3 NA Intergenic L1MB4|LINE|L1 137783 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 769-68 chr8 114274173 114274692 + 3 NA Intergenic Intergenic -837493 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 729 chr1 69796690 69797151 + 3 NA intron (NM_001370785, intron 4 of 26) L2c|LINE|L2 -122402 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 486-51 chr11 93314682 93314938 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -15907 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 778-54 chr5 23944102 23944529 + 3 NA Intergenic THE1A|LTR|ERVL-MaLR -7033 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 559-179 chr8 16427903 16428142 + 3 NA Intergenic MLT1E2|LTR|ERVL-MaLR -235231 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 282-232 chr2 153638806 153639009 + 3 NA Intergenic L2a|LINE|L2 -160145 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 400-111 chr15 61807944 61808208 + 3 NA Intergenic MER106B|DNA|hAT-Charlie 78158 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 396-357 chr8 126055055 126055196 + 3 NA Intergenic Intergenic -103928 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 761-61 chr6 132421435 132421788 + 3 NA Intergenic L1PA10|LINE|L1 -20136 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 592-25 chr11 38020553 38020769 + 3 NA Intergenic L1PA13|LINE|L1 82060 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 699-55 chr2 165425952 165426205 + 3 NA Intergenic MER77B|LTR|ERVL -43620 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 355-90 chr11 41259856 41260082 + 3 NA intron (NM_001258419, intron 1 of 6) MIR|SINE|MIR 199667 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 394-5 chr1 61995291 61995468 + 3 NA intron (NM_001350145, intron 28 of 43) intron (NM_001350145, intron 28 of 43) -83407 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 335 chr1 29513146 29513315 + 3 NA Intergenic Intergenic -163116 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 819-16 chr2 214665033 214665576 + 3 NA Intergenic L1ME5|LINE|L1 144379 NR_104216 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 287-313 chr5 45218816 45218966 + 3 NA Intergenic L1MC1|LINE|L1 409944 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 577-201 chr9 70919977 70920332 + 3 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -51102 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 681-18 chr14 47977475 47977773 + 3 NA Intergenic Intergenic -182610 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 249-218 chr2 147253876 147254033 + 3 NA Intergenic Intergenic -590563 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 487-134 chr2 32839672 32839909 + 3 NA intron (NR_027099, intron 3 of 10) intron (NR_027099, intron 3 of 10) 14357 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 294-499 chr9 81958867 81959024 + 3 NA Intergenic Intergenic 15445 NM_207416 389762 Hs.522246 NM_207416 ENSG00000186788 SPATA31D3 FAM75D3 SPATA31 subfamily D member 3 protein-coding 774-81 chr7 71431993 71432366 + 3 NA intron (NM_022479, intron 5 of 10) AluSx|SINE|Alu -124409 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 540-140 chr3 26414633 26414846 + 3 NA Intergenic Intergenic -208067 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 572-180 chr8 131044123 131044419 + 3 NA Intergenic Intergenic -3362 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 757-18 chr15 26406961 26407268 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 221976 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 385-257 chr3 179876535 179876769 + 3 NA intron (NM_001349404, intron 1 of 10) L1MB4|LINE|L1 -21542 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 494-252 chr6 102306443 102306689 + 3 NA Intergenic L1MA3|LINE|L1 907581 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 460-96 chr16 9960766 9961081 + 3 NA intron (NM_001134408, intron 2 of 13) AluJb|SINE|Alu 221144 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 659-57 chr2 136609339 136609704 + 3 NA Intergenic Intergenic -156024 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 447-272 chr8 98272361 98272587 + 3 NA intron (NR_135747, intron 1 of 11) intron (NR_135747, intron 1 of 11) 21761 NM_024759 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 317-359 chr4 89292557 89292677 + 3 NA intron (NM_198281, intron 1 of 1) L3|LINE|CR1 15183 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 426-288 chr8 49109053 49109343 + 3 NA Intergenic MER4D|LTR|ERV1 36854 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 669-30 chr14 101346552 101346922 + 3 NA Intergenic L1ME1|LINE|L1 61185 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 613-95 chr4 56737699 56738131 + 3 NA Intergenic Intergenic -56209 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 291-172 chr17 52165182 52165382 + 3 NA Intergenic Intergenic -5265 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 327-344 chr3 159713309 159713534 + 3 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 55191 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 300-260 chr22 41996188 41996390 + 3 NA 3' UTR (NM_019106, exon 10 of 10) 3' UTR (NM_019106, exon 10 of 10) -2499 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 285-132 chr15 50709692 50709896 + 3 NA intron (NM_032802, intron 14 of 14) AluSg|SINE|Alu -22997 NR_149153 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 971-4 chr10 105033092 105033508 + 3 NA intron (NM_014978, intron 4 of 26) MIRc|SINE|MIR -367084 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 671-29 chr14 49384037 49384357 + 3 NA Intergenic Intergenic 202183 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 740-13 chr10 43611754 43612221 + 3 NA intron (NM_145312, intron 4 of 4) intron (NM_145312, intron 4 of 4) 5549 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 739-59 chr5 56330915 56331377 + 3 NA Intergenic L1ME1|LINE|L1 -97816 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 274-334 chr6 53178322 53178444 + 3 NA Intergenic Intergenic -29542 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 306-491 chr8 30344901 30345090 + 3 NA Intergenic L1MC|LINE|L1 -39506 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 525-82 chr16 6982287 6982581 + 3 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 208625 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 625-79 chr5 11233247 11233707 + 3 NA intron (NM_001288715, intron 9 of 20) intron (NM_001288715, intron 9 of 20) 355440 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 551-112 chr22 26918433 26918673 + 3 NA intron (NR_110540, intron 2 of 2) L5|LINE|RTE-X 15261 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 585-170 chr9 75829664 75830015 + 3 NA Intergenic MER33|DNA|hAT-Charlie -60805 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 595-17 chr10 60567239 60567643 + 3 NA intron (NM_001204403, intron 2 of 43) Tigger1|DNA|TcMar-Tigger 5515 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 891 chr10 107565680 107566284 + 3 NA Intergenic L1MB8|LINE|L1 -401276 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 488-164 chr22 26842823 26843045 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR -17277 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 440-85 chr16 58271823 58271990 + 3 NA intron (NM_014157, intron 7 of 8) L1MC3|LINE|L1 21970 NM_014157 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 577-172 chr6 118595362 118595722 + 3 NA intron (NM_001042475, intron 2 of 12) L2b|LINE|L2 47246 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 431-290 chr8 60068166 60068326 + 3 NA Intergenic L1MC4|LINE|L1 213154 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 960-5 chr11 109694819 109695398 + 3 NA Intergenic L1M2|LINE|L1 272918 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 707-67 chr3 82122822 82123379 + 3 NA intron (NR_147146, intron 1 of 8) ERV3-16A3_I-int|LTR|ERVL 136958 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 277-343 chr6 12933970 12934168 + 3 NA intron (NM_001322308, intron 3 of 13) MLT1C|LTR|ERVL-MaLR -23287 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 670-25 chr11 109612953 109613285 + 3 NA Intergenic Intergenic 190929 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 574-197 chrX 7350694 7350985 + 3 NA 3' UTR (NM_001320754, exon 10 of 10) 3' UTR (NM_001320754, exon 10 of 10) 98366 NM_001320754 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 732-69 chr4 57577732 57578127 + 3 NA Intergenic Intergenic 152057 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 432-214 chr5 7385281 7385452 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -10772 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 369-282 chr4 30498793 30499055 + 3 NA Intergenic Intergenic -221445 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 400-195 chr20 58494153 58494328 + 3 NA intron (NR_130908, intron 1 of 1) Tigger2a|DNA|TcMar-Tigger 20698 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 443-62 chr12 7371530 7371740 + 3 NA intron (NM_001297650, intron 14 of 19) intron (NM_001297650, intron 14 of 19) 67303 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 596-69 chr15 27161281 27161650 + 3 NA promoter-TSS (NR_120343) promoter-TSS (NR_120343) -146 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 802-26 chr18 80084692 80085271 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 17725 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 357-436 chr8 75593275 75593535 + 3 NA Intergenic L1M3de|LINE|L1 53437 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 520-32 chr10 42908138 42908399 + 3 NA Intergenic L1PBa1|LINE|L1 36747 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 421-263 chr6 126664258 126664458 + 3 NA Intergenic Intergenic 179727 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 474-139 chr2 81368625 81368854 + 3 NA Intergenic Intergenic 98207 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 216-233 chr3 124212854 124212968 + 3 NA intron (NM_001024660, intron 1 of 59) L1ME4a|LINE|L1 79982 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 280-79 chr11 114971633 114971776 + 3 NA Intergenic MIRb|SINE|MIR 293177 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 545-6 chr1 84097049 84097392 + 3 NA intron (NM_002731, intron 1 of 9) L1ME3|LINE|L1 19141 NM_207578 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 518-180 chr3 88704740 88705058 + 3 NA Intergenic Intergenic 366443 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 554-31 chr10 66099219 66099493 + 3 NA intron (NM_001127384, intron 14 of 17) intron (NM_001127384, intron 14 of 17) 527931 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 495-84 chr17 34866498 34866799 + 3 NA Intergenic Intergenic 94812 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 340-169 chr15 51255943 51256094 + 3 NA promoter-TSS (NM_001347253) promoter-TSS (NM_001347253) -229 NM_001347253 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 842-26 chr2 185764346 185764842 + 3 NA intron (NM_173651, intron 13 of 22) intron (NM_173651, intron 13 of 22) -24117 NR_110217 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 459-75 chr14 27323343 27323608 + 3 NA intron (NR_148991, intron 2 of 2) L1MC1|LINE|L1 -289113 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 900-47 chrX 147461847 147462209 + 3 NA Intergenic L1ME1|LINE|L1 -177300 NR_030240 574518 NR_030240 ENSG00000207867 MIR514A3 MIR514-3|MIRN514-3|hsa-mir-514a-3 microRNA 514a-3 ncRNA 530-100 chr17 58146921 58147266 + 3 NA Intergenic L1MB7|LINE|L1 -8061 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 984-12 chr5 150892844 150893337 + 3 NA intron (NM_001346557, intron 3 of 3) intron (NM_001346557, intron 3 of 3) 11893 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 599-59 chr2 86163431 86163690 + 3 NA intron (NM_006839, intron 7 of 14) Charlie4a|DNA|hAT-Charlie 27690 NR_004378 692225 Hs.723087 NR_004378 ENSG00000208772 SNORD94 U94 small nucleolar RNA, C/D box 94 snoRNA 519-210 chr7 49941834 49942052 + 3 NA intron (NM_001159878, intron 7 of 7) L1M3|LINE|L1 151303 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 292-26 chr1 166292450 166292631 + 3 NA Intergenic L1MB5|LINE|L1 -125785 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 609-89 chr4 62464288 62464646 + 3 NA Intergenic Intergenic -302702 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 468-321 chr8 122468743 122469103 + 3 NA intron (NR_131202, intron 2 of 3) L1PREC2|LINE|L1 99721 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 378-249 chr2 184987010 184987278 + 3 NA Intergenic L1M2|LINE|L1 179928 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 1007-12 chr4 174249961 174250508 + 3 NA intron (NM_012180, intron 3 of 5) MIR|SINE|MIR -29836 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 577-86 chr19 56463969 56464328 + 3 NA intron (NM_022103, intron 1 of 4) Charlie5|DNA|hAT-Charlie 13197 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 698-48 chr20 55238530 55238887 + 3 NA Intergenic Intergenic -184335 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 500-158 chr2 195984598 195984914 + 3 NA intron (NM_018897, intron 14 of 64) intron (NM_018897, intron 14 of 64) 84081 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 346-63 chr11 22775699 22775849 + 3 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 53605 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 503-32 chr10 61019536 61019811 + 3 NA intron (NR_108052, intron 1 of 1) intron (NR_108052, intron 1 of 1) 3398 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 632-51 chr2 59476748 59477110 + 3 NA Intergenic L1MA8|LINE|L1 259221 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 398-132 chr16 79500774 79501024 + 3 NA Intergenic Intergenic 99838 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 526-239 chr8 26880927 26881158 + 3 NA Intergenic L1ME3A|LINE|L1 -13764 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 368-135 chr14 37936202 37936476 + 3 NA Intergenic Intergenic -34215 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 611-126 chr5 150683542 150683851 + 3 NA Intergenic L1ME2z|LINE|L1 17366 NM_018047 55696 Hs.713564 NM_018047 ENSG00000086589 RBM22 Cwc2|ZC3H16|fSAP47 RNA binding motif protein 22 protein-coding 646-30 chr12 34656943 34657330 + 3 NA Intergenic ALR/Alpha|Satellite|centr 634640 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 342-393 chr5 43818371 43818564 + 3 NA Intergenic Intergenic -215237 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 614-96 chr5 32925983 32926304 + 3 NA Intergenic Intergenic -21300 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 894-26 chr3 60374399 60374886 + 3 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 243228 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 1070-5 chr12 18703894 18704404 + 3 NA intron (NM_033123, intron 7 of 14) L2|LINE|L2 33360 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 272-264 chr3 50523698 50523835 + 3 NA Intergenic MIRc|SINE|MIR -19522 NM_001291101 9254 Hs.476273 NM_006030 ENSG00000007402 CACNA2D2 CACNA2D calcium voltage-gated channel auxiliary subunit alpha2delta 2 protein-coding 426-41 chr11 31823985 31824342 + 3 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) -2404 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 425-64 chr12 5101476 5101637 + 3 NA Intergenic Intergenic 57677 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 900-32 chr4 49007146 49007544 + 3 NA intron (NM_001286791, intron 8 of 15) intron (NM_001286791, intron 8 of 15) 20703 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 690-24 chr12 37748739 37749085 + 3 NA Intergenic ALR/Alpha|Satellite|centr -567862 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 315-355 chr4 156351821 156351964 + 3 NA Intergenic Intergenic -398026 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 345-385 chr4 58184497 58184651 + 3 NA Intergenic Intergenic 351754 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 430-9 chr1 115281404 115281577 + 3 NA Intergenic Intergenic -1544 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 642-70 chr3 53653912 53654330 + 3 NA intron (NM_001128840, intron 4 of 47) L1ME1|LINE|L1 159510 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 507-220 chr6 57304058 57304342 + 3 NA Intergenic Intergenic -10605 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 654-39 chr14 100956243 100956593 + 3 NA promoter-TSS (NR_003198) promoter-TSS (NR_003198) -748 NR_003198 767582 NR_003198 ENSG00000201263 SNORD114-6 14q(II-6) small nucleolar RNA, C/D box 114-6 snoRNA 952-2 chr1 164948125 164948584 + 3 NA Intergenic L1MB1|LINE|L1 -173713 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 882-13 chr15 60764629 60765025 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 83258 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 535-108 chr17 77701861 77702184 + 3 NA Intergenic MER87B|LTR|ERV1 26537 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 576-46 chr14 49382966 49383355 + 3 NA Intergenic L2b|LINE|L2 203220 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 305-183 chr16 65940284 65940464 + 3 NA Intergenic Intergenic -364074 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 715-97 chrX 82139353 82139680 + 3 NA Intergenic L1M2|LINE|L1 937414 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 894-8 chr11 32950001 32950327 + 3 NA intron (NM_001076786, intron 4 of 12) AluSx1|SINE|Alu 57353 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 269-398 chr8 60471511 60471705 + 3 NA Intergenic L1M5|LINE|L1 -45302 NM_001242644 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 619-107 chr5 159125880 159126201 + 3 NA Intergenic MER30|DNA|hAT-Charlie 25557 NR_109890 101927740 Hs.738721 NR_109890 ENSG00000245812 LINC02202 - long intergenic non-protein coding RNA 2202 ncRNA 528-220 chr6 49200652 49200966 + 3 NA Intergenic Intergenic 262444 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 502-248 chr7 69524805 69524978 + 3 NA Intergenic L1M4b|LINE|L1 72733 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 732-30 chr15 98500554 98501122 + 3 NA intron (NM_182562, intron 2 of 6) L1M2a|LINE|L1 13498 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 420-49 chr10 111790620 111790810 + 3 NA Intergenic L1MD2|LINE|L1 393050 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 509-191 chr5 59409958 59410144 + 3 NA intron (NM_001165899, intron 3 of 16) L1MA3|LINE|L1 -53081 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 583-150 chr7 41529360 41529697 + 3 NA Intergenic Intergenic -164391 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 525-18 chr1 222040751 222041046 + 3 NA Intergenic Intergenic -62378 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 309-323 chr21 46655439 46655599 + 3 NA TTS (NM_001242865) TTS (NM_001242865) 19845 NM_206962 3275 Hs.154163 NM_001535 ENSG00000160310 PRMT2 HRMT1L1 protein arginine methyltransferase 2 protein-coding 555-134 chr3 175111693 175112006 + 3 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) 3393 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 799-23 chr19 52098851 52099409 + 3 NA Intergenic MER83|LTR|ERV1 -3365 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 353-270 chr2 203902627 203902769 + 3 NA Intergenic L1M4|LINE|L1 -34050 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 391-68 chr12 10679076 10679355 + 3 NA Intergenic L3|LINE|CR1 -5163 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 398-396 chrX 99411275 99411445 + 3 NA Intergenic L1ME3A|LINE|L1 998913 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 487-201 chr3 195020956 195021138 + 3 NA Intergenic Intergenic -73541 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 584-130 chr5 30458793 30459125 + 3 NA Intergenic Intergenic 578399 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 393-94 chr14 50935743 50935946 + 3 NA intron (NM_001163940, intron 1 of 18) intron (NM_001163940, intron 1 of 18) 8639 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 208-114 chr2 47929606 47929705 + 3 NA Intergenic Intergenic -23862 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 864-19 chr18 30577497 30578147 + 3 NA Intergenic Intergenic 278912 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 849-13 chr15 26287771 26288089 + 3 NA Intergenic L1MA9|LINE|L1 172117 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 454-104 chr15 58092817 58093079 + 3 NA Intergenic L1MEd|LINE|L1 -27025 NM_001206897 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 511-244 chr7 25360772 25360991 + 3 NA Intergenic Intergenic -132395 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 969-4 chr10 83749187 83749780 + 3 NA Intergenic L1M2b|LINE|L1 -72394 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 608-80 chr2 196959929 196960357 + 3 NA Intergenic Intergenic -33436 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 544-179 chr5 63794198 63794451 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR 167968 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 777-63 chr7 1378321 1378668 + 3 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat 80976 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 432-148 chr2 213015247 213015461 + 3 NA intron (NM_001371274, intron 6 of 7) intron (NM_001371274, intron 6 of 7) -89018 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 1308-3 chr7 25373549 25374472 + 3 NA Intergenic Intergenic -145524 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 658-120 chr8 66268963 66269389 + 3 NA Intergenic L2c|LINE|L2 77062 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 278-311 chr4 62469686 62469778 + 3 NA Intergenic Intergenic -307967 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 446-156 chr2 133372231 133372410 + 3 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 106125 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 279-224 chr20 47935949 47936055 + 3 NA Intergenic LTR37A|LTR|ERV1 -47224 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 364-76 chr10 125973150 125973340 + 3 NA promoter-TSS (NR_102707) promoter-TSS (NR_102707) 28 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 582-7 chr10 43488084 43488440 + 3 NA Intergenic Intergenic 51151 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 962-13 chr3 37073755 37074142 + 3 NA intron (NM_006309, intron 20 of 27) intron (NM_006309, intron 20 of 27) 80598 NM_001354627 4292 Hs.195364 NM_000249 ENSG00000076242 MLH1 COCA2|FCC2|HNPCC|HNPCC2|hMLH1 mutL homolog 1 protein-coding 543-66 chr12 92361450 92361748 + 3 NA Intergenic Intergenic -59932 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 486-123 chr19 9385792 9386018 + 3 NA Intergenic Intergenic 9589 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 753-2 chr1 103203666 103204199 + 3 NA Intergenic LTR33|LTR|ERVL -95410 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 500-73 chr12 131319095 131319418 + 3 NA Intergenic MER4-int|LTR|ERV1 -21284 NR_135045 107161159 Hs.730119 NR_135045 ENSG00000248703 LINC02415 - long intergenic non-protein coding RNA 2415 ncRNA 385-329 chr6 62936093 62936310 + 3 NA Intergenic L1MA3|LINE|L1 383776 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 520-319 chr9 6174463 6174764 + 3 NA Intergenic L1M1|LINE|L1 -40536 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 850-22 chr2 132854521 132855037 + 3 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -60778 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 590-98 chr3 4557024 4557299 + 3 NA intron (NM_001168272, intron 4 of 60) THE1B|LTR|ERVL-MaLR 63813 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 497-77 chr14 68528309 68528599 + 3 NA intron (NM_001321818, intron 10 of 10) L4_C_Mam|LINE|RTE-X 100333 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 523-138 chr2 130998429 130998625 + 3 NA intron (NM_001367493, intron 4 of 13) L1MC2|LINE|L1 94635 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 548-27 chr10 120617537 120617845 + 3 NA Intergenic MIR|SINE|MIR 19742 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 483-223 chr6 6138974 6139217 + 3 NA Intergenic Intergenic -30239 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 445-244 chr7 3077994 3078221 + 3 NA Intergenic L2a|LINE|L2 -34240 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 406-310 chr9 32615764 32615975 + 3 NA Intergenic Intergenic 19800 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 545-107 chr2 36830495 36830754 + 3 NA Intergenic L1MEf|LINE|L1 133917 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 480-222 chr4 139578618 139578801 + 3 NA Intergenic LTR40b|LTR|ERVL -21940 NR_131339 80854 Hs.480792 NM_030648 ENSG00000145391 SETD7 KMT7|SET7|SET7/9|SET9 SET domain containing 7, histone lysine methyltransferase protein-coding 473-38 chr10 108503528 108503751 + 3 NA Intergenic L2a|LINE|L2 -434346 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 516-139 chr2 183476715 183477018 + 3 NA Intergenic Intergenic 352423 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 491-116 chr2 58827962 58828261 + 3 NA intron (NR_033873, intron 2 of 13) L1M1|LINE|L1 307358 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 835-51 chr7 78248813 78249311 + 3 NA intron (NM_001301128, intron 10 of 20) L1MA6|LINE|L1 -98180 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 168-115 chr8 103873638 103873721 + 3 NA intron (NR_145711, intron 1 of 21) intron (NR_145711, intron 1 of 21) 54459 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 718-34 chr18 2191566 2192010 + 3 NA Intergenic Intergenic 379717 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 377-163 chr17 72812755 72812917 + 3 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -172364 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 471-85 chr14 70491215 70491512 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -7607 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 648-153 chr9 119810648 119811113 + 3 NA Intergenic Intergenic -124180 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 434-145 chr2 78066392 78066593 + 3 NA intron (NR_110288, intron 1 of 3) MamGypsy2-I|LTR|Gypsy -22238 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 538-147 chr3 34301244 34301577 + 3 NA Intergenic Intergenic 502780 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 501-288 chrX 86453264 86453592 + 3 NA intron (NM_001139515, intron 2 of 11) L1PA11|LINE|L1 190460 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 403-280 chr7 31880070 31880295 + 3 NA intron (NM_001191059, intron 4 of 18) MamRep434|DNA|TcMar-Tigger 190225 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 519-55 chr13 78150235 78150521 + 3 NA intron (NR_047001, intron 1 of 5) L1P4|LINE|L1 95523 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 664-60 chr2 153040383 153040668 + 3 NA Intergenic Intergenic 321888 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 317-437 chr7 7920415 7920529 + 3 NA Intergenic Intergenic 48280 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 1019-14 chr22 26180113 26180798 + 3 NA intron (NM_001184776, intron 1 of 14) L2c|LINE|L2 10981 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 207-63 chr12 9955349 9955465 + 3 NA intron (NM_001207010, intron 1 of 6) LOR1-int|LTR|ERV1 -2070 NR_135047 400002 NR_135047 ENSG00000231560 CLEC12A-AS1 - CLEC12A antisense RNA 1 ncRNA 270-274 chr4 98105987 98106124 + 3 NA exon (NM_174952, exon 5 of 11) exon (NM_174952, exon 5 of 11) 37421 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 474-36 chr10 66462463 66462773 + 3 NA intron (NM_001127384, intron 11 of 17) MIR|SINE|MIR -463418 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 323-558 chr8 120232140 120232287 + 3 NA intron (NM_021110, intron 19 of 47) intron (NM_021110, intron 19 of 47) 107111 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 733-4 chr1 119198111 119198440 + 3 NA intron (NR_125975, intron 4 of 6) L1PA7|LINE|L1 -57603 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 444-235 chr7 27964166 27964362 + 3 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -216193 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 626-132 chr7 124644824 124645164 + 3 NA Intergenic L1MB1|LINE|L1 120798 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 381-217 chr2 224846867 224847081 + 3 NA intron (NM_001290263, intron 19 of 55) intron (NM_001290263, intron 19 of 55) 100075 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 549-25 chr10 39293822 39294131 + 3 NA Intergenic ALR/Alpha|Satellite|centr 597380 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 334-337 chr3 39883357 39883506 + 3 NA intron (NM_001284424, intron 1 of 15) L1MEg|LINE|L1 73771 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 868-7 chr11 112733241 112733626 + 3 NA Intergenic MLT1M|LTR|ERVL-MaLR -177631 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 207-97 chr16 27420953 27421050 + 3 NA intron (NM_181079, intron 2 of 9) L1MB7|LINE|L1 -6270 NM_021798 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 608-106 chr4 30409973 30410259 + 3 NA Intergenic L1M2|LINE|L1 -310253 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 524-124 chr2 164042733 164042907 + 3 NA Intergenic Intergenic -306812 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 184-128 chr4 129552681 129552752 + 3 NA Intergenic Intergenic 218762 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 385-340 chr6 132095239 132095459 + 3 NA Intergenic Intergenic 19914 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 677-58 chr3 97089042 97089444 + 3 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 274649 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 535-211 chr5 159743174 159743413 + 3 NA Intergenic L1ME1|LINE|L1 128091 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 605-135 chr9 119619931 119620158 + 3 NA Intergenic L1PA13|LINE|L1 -250609 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 554-145 chr3 35684032 35684294 + 3 NA 3' UTR (NM_001267616, exon 6 of 6) 3' UTR (NM_001267616, exon 6 of 6) 3223 NM_198399 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 479-157 chr4 44140294 44140453 + 3 NA Intergenic L2a|LINE|L2 123311 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 617-13 chr10 61384447 61384798 + 3 NA Intergenic Intergenic -68017 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 445-78 chr15 66374899 66375121 + 3 NA Intergenic L1ME3A|LINE|L1 -11863 NM_002755 5604 Hs.145442 NM_002755 ENSG00000169032 MAP2K1 CFC3|MAPKK1|MEK1|MKK1|PRKMK1 mitogen-activated protein kinase kinase 1 protein-coding 672-47 chr19 36833670 36834078 + 3 NA intron (NM_001242800, intron 1 of 4) L1M5|LINE|L1 4153 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 564-134 chr3 137445660 137445848 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR -318561 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 278-88 chr13 45017700 45017885 + 3 NA intron (NM_001316952, intron 6 of 8) intron (NM_001316952, intron 6 of 8) 28254 NM_001316952 55425 Hs.731811 NM_018559 ENSG00000133114 GPALPP1 AD029|KIAA1704|LSR7|bA245H20.2 GPALPP motifs containing 1 protein-coding 449-171 chr3 104745784 104745995 + 3 NA Intergenic Intergenic -620824 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 444-50 chr12 39150772 39150974 + 3 NA Intergenic L1MA2|LINE|L1 -245282 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 547-171 chr4 165653240 165653550 + 3 NA Intergenic Intergenic -31244 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 350-243 chr2 138038960 138039138 + 3 NA Intergenic MER5A|DNA|hAT-Charlie -62835 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 687-90 chr5 30169348 30169743 + 3 NA Intergenic Intergenic 288985 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 531-117 chr2 123852202 123852617 + 3 NA Intergenic L1MB3|LINE|L1 172765 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 231-29 chr10 16512026 16512134 + 3 NA 3' UTR (NM_001001484, exon 6 of 6) 3' UTR (NM_001001484, exon 6 of 6) 9799 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 586-119 chr5 44272089 44272334 + 3 NA Intergenic L1MCa|LINE|L1 -116521 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 815-24 chr19 58107647 58108171 + 3 NA non-coding (NR_027135, exon 2 of 2) non-coding (NR_027135, exon 2 of 2) -9546 NM_001145543 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 684-119 chr8 112618990 112619334 + 3 NA intron (NM_001363185, intron 20 of 66) L2|LINE|L2 -24331 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 760-31 chr2 89833849 89834250 + 3 NA Intergenic Intergenic -196142 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 326-355 chr3 128300649 128300842 + 3 NA intron (NM_021937, intron 4 of 6) intron (NM_021937, intron 4 of 6) -146831 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 512-194 chr4 72956201 72956390 + 3 NA Intergenic Intergenic 113421 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 868-12 chr15 60048443 60048955 + 3 NA Intergenic Charlie5|DNA|hAT-Charlie 44388 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 373-121 chr14 81877214 81877412 + 3 NA Intergenic L1MCa|LINE|L1 -134175 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 558-14 chr1 192695697 192696029 + 3 NA Intergenic MIRb|SINE|MIR -20465 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 192-106 chr2 180446626 180446740 + 3 NA Intergenic Intergenic -245421 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 332-489 chr7 68757200 68757401 + 3 NA Intergenic Intergenic 737047 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 404-117 chr16 58272819 58273008 + 3 NA intron (NM_014157, intron 7 of 8) L1MC3|LINE|L1 22112 NM_001305173 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 361-225 chr2 105515322 105515524 + 3 NA Intergenic Intergenic -76910 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 390-159 chr18 68669653 68669794 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 45385 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 527-250 chr7 81128336 81128555 + 3 NA Intergenic L1PB4|LINE|L1 -206056 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 469-65 chr12 46870277 46870525 + 3 NA Intergenic Intergenic -44404 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 430-233 chr5 12487821 12488045 + 3 NA Intergenic L1MA6|LINE|L1 -86924 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 537-231 chr7 24282786 24283081 + 3 NA Intergenic Intergenic -1257 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 312-461 chr6 136104937 136105096 + 3 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) -32189 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 711-62 chr5 154162358 154162704 + 3 NA Intergenic Intergenic -28202 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 465-194 chr3 189089935 189090157 + 3 NA Intergenic L1M5|LINE|L1 -81925 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 165-3 chr1 189273541 189273610 + 3 NA Intergenic Intergenic 1202435 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 1158-4 chr12 66140989 66141640 + 3 NA intron (NM_016056, intron 5 of 6) L1MEc|LINE|L1 10563 NR_125724 103625681 Hs.504820 NR_125724 ENSG00000239335 LLPH-DT LLPH-AS1 LLPH divergent transcript ncRNA 221-295 chr8 52542510 52542660 + 3 NA intron (NM_207413, intron 1 of 4) L2b|LINE|L2 22845 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 509-73 chr14 62945985 62946290 + 3 NA intron (NM_139318, intron 7 of 10) L2a|LINE|L2 99321 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 360-168 chr17 63220912 63221137 + 3 NA intron (NM_025185, intron 6 of 25) L1ME1|LINE|L1 219243 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 594-16 chr10 58705822 58706283 + 3 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) -8963 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 770-38 chr2 107644607 107644973 + 3 NA Intergenic L1MB1|LINE|L1 -109322 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 570-189 chr8 245687 246062 + 3 NA exon (NM_001287399, exon 6 of 6) exon (NM_001287399, exon 6 of 6) 13418 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 588-67 chr2 50676191 50676587 + 3 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 19873 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 450-231 chr5 3000956 3001191 + 3 NA Intergenic Intergenic 83219 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 477-63 chr11 99382300 99382557 + 3 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -173717 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 476-217 chr5 43031825 43032017 + 3 NA intron (NR_104651, intron 2 of 2) (AT)n|Simple_repeat|Simple_repeat 8424 NM_001014279 389289 Hs.529385 NM_001014279 ENSG00000177721 ANXA2R AX2R|AXIIR|C5orf39 annexin A2 receptor protein-coding 472-186 chr20 42668050 42668264 + 3 NA intron (NM_133170, intron 7 of 31) LTR36|LTR|ERV1 -17326 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 325-535 chr8 48682509 48682693 + 3 NA intron (NR_105002, intron 2 of 3) intron (NR_105002, intron 2 of 3) 52667 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 211-98 chr15 68094456 68094584 + 3 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 39944 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 659-122 chr8 130470725 130471018 + 3 NA Intergenic Intergenic -27197 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 253-18 chr1 158857004 158857135 + 3 NA Intergenic L1MEf|LINE|L1 25718 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 464-226 chr6 162278169 162278421 + 3 NA intron (NM_004562, intron 2 of 11) L1MC1|LINE|L1 -448837 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 217-174 chr2 95129095 95129208 + 3 NA Intergenic L1MD1|LINE|L1 -7124 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 405-310 chr7 126125220 126125392 + 3 NA Intergenic L1PB4|LINE|L1 -861015 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 409-146 chr2 107721377 107721572 + 3 NA Intergenic Intergenic -32638 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 379-372 chr9 8844195 8844395 + 3 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -13723 NR_121599 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 490-237 chr6 27329275 27329530 + 3 NA Intergenic L1ME3A|LINE|L1 4641 NR_045612 387316 Hs.326753 NM_032030 VN1R10P FKSG83|VNR6I1P|b24o18.2|hs6V1-1p vomeronasal 1 receptor 10 pseudogene pseudo 503-255 chr7 23953811 23954072 + 3 NA Intergenic L1M2|LINE|L1 243722 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 465-152 chr2 236424146 236424367 + 3 NA intron (NR_073043, intron 7 of 19) intron (NR_073043, intron 7 of 19) 79441 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 462-112 chr18 4781549 4781723 + 3 NA Intergenic LTR43B|LTR|ERV1 -299546 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 1383-4 chr21 30828488 30829230 + 3 NA TTS (NM_181606) TTS (NM_181606) 900 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 526-9 chr1 178652235 178652426 + 3 NA Intergenic Intergenic -25419 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 443-252 chr5 136789452 136789694 + 3 NA Intergenic L1MEg|LINE|L1 -338624 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 736-82 chr7 89697302 89697689 + 3 NA Intergenic L1MA1|LINE|L1 -421905 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 437-131 chr2 67442883 67443133 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 45675 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 538-168 chr4 32731448 32731724 + 3 NA Intergenic Intergenic 380548 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 291-466 chr8 120300619 120300746 + 3 NA intron (NM_021110, intron 35 of 47) intron (NM_021110, intron 35 of 47) 144468 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 287-256 chr3 99145152 99145338 + 3 NA Intergenic Intergenic -243550 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 477-49 chr11 2646264 2646490 + 3 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 53621 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 541-27 chr11 4432987 4433298 + 3 NA Intergenic Intergenic -16153 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 410-93 chr14 82238751 82238937 + 3 NA Intergenic Intergenic -403788 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 384-131 chr16 6125934 6126183 + 3 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 106355 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 351-248 chr2 183864866 183865101 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger -513992 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 535-143 chr2 193997556 193997757 + 3 NA Intergenic Intergenic -346613 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 651-75 chr20 1228673 1229081 + 3 NA intron (NM_001136566, intron 2 of 13) intron (NM_001136566, intron 2 of 13) 2757 NM_001136566 642636 Hs.713451 NM_001136566 ENSG00000244588 RAD21L1 RAD21L|dJ545L17.2 RAD21 cohesin complex component like 1 protein-coding 516-19 chr10 30202453 30202658 + 3 NA Intergenic L1M5|LINE|L1 -9297 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 255-439 chr8 130777546 130777654 + 3 NA Intergenic Intergenic 263309 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 537-271 chr9 32530502 32530845 + 3 NA Intergenic L1ME2|LINE|L1 -4477 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 571-148 chr6 40616010 40616266 + 3 NA Intergenic L1ME2z|LINE|L1 -28774 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 915-27 chr7 79285571 79285938 + 3 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -167203 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 553-7 chr1 116299575 116299806 + 3 NA Intergenic L2|LINE|L2 -73554 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 388-80 chr12 45450848 45450994 + 3 NA Intergenic L1MB3|LINE|L1 158231 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 620-119 chr6 84690622 84690912 + 3 NA intron (NR_125875, intron 1 of 2) MER63B|DNA|hAT-Blackjack 1309 NR_125876 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 428-290 chr8 56874007 56874227 + 3 NA Intergenic Intergenic 119750 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 888-30 chr4 61967350 61967681 + 3 NA intron (NM_001371343, intron 16 of 23) intron (NM_001371343, intron 16 of 23) 194250 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 939-20 chr5 73349129 73349699 + 3 NA Intergenic Ricksha_c|DNA|MULE-MuDR 11508 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 474-179 chr3 37689145 37689375 + 3 NA intron (NM_002207, intron 18 of 27) intron (NM_002207, intron 18 of 27) 172520 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 344-257 chr2 168987755 168987932 + 3 NA intron (NM_003742, intron 9 of 27) intron (NM_003742, intron 9 of 27) 43481 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 532-268 chr8 64312734 64313026 + 3 NA intron (NR_125826, intron 1 of 4) L1MEc|LINE|L1 55678 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 936-13 chr18 11265352 11265731 + 3 NA Intergenic Intergenic -116779 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 824-33 chr4 85763686 85764069 + 3 NA intron (NM_001025616, intron 3 of 9) intron (NM_001025616, intron 3 of 9) -14921 NM_001042669 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 453-33 chr10 111060830 111061104 + 3 NA Intergenic L1MA5A|LINE|L1 -16062 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 495-142 chr21 27767137 27767459 + 3 NA Intergenic MLT2B3|LTR|ERVL 44919 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 844-47 chr3 110560301 110560742 + 3 NA Intergenic L1MA3|LINE|L1 509438 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 501-166 chr3 68245099 68245277 + 3 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 240941 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 536-231 chr8 92384269 92384489 + 3 NA Intergenic L1PA3|LINE|L1 271115 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 564-63 chr15 60955331 60955553 + 3 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 273860 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 550-126 chr2 194033718 194033941 + 3 NA Intergenic L1PB1|LINE|L1 -310440 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 413-125 chr19 29508257 29508433 + 3 NA intron (NR_040029, intron 1 of 9) MIR|SINE|MIR 17407 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 686-60 chr4 173181207 173181544 + 3 NA intron (NM_017423, intron 1 of 11) intron (NM_017423, intron 1 of 11) -11723 NR_134241 101930370 Hs.563191 NR_134241 ENSG00000245213 LOC101930370 - uncharacterized LOC101930370 ncRNA 514-304 chrX 76717701 76717980 + 3 NA intron (NR_110400, intron 1 of 3) intron (NR_110400, intron 1 of 3) 201520 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 834-45 chr7 69071057 69071550 + 3 NA Intergenic MIRb|SINE|MIR 526321 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 755-9 chr10 5162426 5162943 + 3 NA intron (NR_027916, intron 2 of 7) intron (NR_027916, intron 2 of 7) 22503 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 580-25 chr11 56187166 56187507 + 3 NA Intergenic L2a|LINE|L2 10718 NM_001005492 282775 Hs.537145 NM_001005492 ENSG00000174957 OR5J2 OR11-266 olfactory receptor family 5 subfamily J member 2 protein-coding 893-6 chr10 62655680 62656112 + 3 NA intron (NM_199452, intron 4 of 6) MIR|SINE|MIR 135448 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 468-233 chr4 161129539 161129751 + 3 NA Intergenic Intergenic -893088 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 796-2 chr1 164528143 164528661 + 3 NA Intergenic Intergenic -30958 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 751-22 chr17 34476714 34477183 + 3 NA Intergenic Intergenic 102421 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 583-170 chr9 28714345 28714689 + 3 NA intron (NM_001354574, intron 2 of 5) MLT1J1|LTR|ERVL-MaLR 4788 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 576-186 chrX 49139326 49139622 + 3 NA Intergenic LTR42|LTR|ERVL -15739 NM_015698 27238 Hs.503666 NM_015698 ENSG00000068394 GPKOW GPATC5|GPATCH5|Spp2|T54 G-patch domain and KOW motifs protein-coding 423-125 chr2 17067272 17067452 + 3 NA Intergenic Intergenic -401528 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 592-63 chr17 47874081 47874409 + 3 NA Intergenic AluJb|SINE|Alu -18548 NM_199262 80320 Hs.253603 NM_199262 ENSG00000189120 SP6 EPFN|EPIPROFIN|KLF14 Sp6 transcription factor protein-coding 601-132 chr6 39023647 39023946 + 3 NA intron (NM_001371, intron 90 of 91) intron (NM_001371, intron 90 of 91) -24985 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 596-174 chr8 144927354 144927592 + 3 NA Intergenic AluSz|SINE|Alu 23407 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 389-18 chr1 176453007 176453223 + 3 NA Intergenic Intergenic -10060 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 1019-21 chr8 77548350 77548978 + 3 NA Intergenic L1PA16|LINE|L1 97967 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 913-5 chr10 98071609 98072181 + 3 NA Intergenic Intergenic -41067 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 473-182 chr3 139898318 139898572 + 3 NA Intergenic L1ME2|LINE|L1 -36740 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 441-135 chr2 172294011 172294240 + 3 NA Intergenic Intergenic -133211 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 624-80 chr22 29080538 29080780 + 3 NA intron (NM_001039570, intron 1 of 8) intron (NM_001039570, intron 1 of 8) 7624 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 262-40 chr10 17276482 17276627 + 3 NA Intergenic L1MEj|LINE|L1 -46569 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 433-28 chr10 78724662 78724807 + 3 NA Intergenic Intergenic 342714 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 693-23 chr12 61220327 61220832 + 3 NA Intergenic Intergenic 972260 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 268-335 chr6 35220164 35220259 + 3 NA intron (NM_001303136, intron 1 of 21) MIRc|SINE|MIR 6255 NM_152753 222663 Hs.12923 NM_152753 ENSG00000146197 SCUBE3 CEGF3 signal peptide, CUB domain and EGF like domain containing 3 protein-coding 235-69 chr11 100275530 100275686 + 3 NA intron (NM_001243270, intron 17 of 23) intron (NM_001243270, intron 17 of 23) -411680 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 449-264 chr7 147826544 147826717 + 3 NA intron (NM_014141, intron 12 of 22) intron (NM_014141, intron 12 of 22) 154951 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 490-82 chr14 22153331 22153551 + 3 NA Intergenic Intergenic 279312 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 838-42 chr8 134369945 134370455 + 3 NA Intergenic Intergenic -227871 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 420-52 chr11 55668314 55668495 + 3 NA Intergenic MIR|SINE|MIR 3237 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 525-10 chr1 115573434 115573614 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -68446 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 542-42 chr12 15533784 15534056 + 3 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -12691 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 449-59 chr12 85154482 85154747 + 3 NA intron (NM_001079910, intron 23 of 26) intron (NM_001079910, intron 23 of 26) 118263 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 524-62 chr14 47086696 47087068 + 3 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 256364 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 464-129 chr2 122180425 122180593 + 3 NA Intergenic MLT2B2|LTR|ERVL 424858 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 456-90 chr14 60427811 60428053 + 3 NA Intergenic L1MA8|LINE|L1 58131 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 638-162 chr8 128992491 128992839 + 3 NA Intergenic Intergenic -26664 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 462-301 chr9 126216914 126217157 + 3 NA Intergenic L1ME4a|LINE|L1 58880 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 414-227 chr4 38345702 38345929 + 3 NA Intergenic Intergenic -21099 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 521-242 chr7 95787888 95788073 + 3 NA intron (NM_004411, intron 1 of 16) L2a|LINE|L2 15474 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 575-193 chr8 73222176 73222523 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 37153 NM_001243237 100130301 Hs.202296 NM_001243237 ENSG00000274443 C8orf89 - chromosome 8 open reading frame 89 protein-coding 236-103 chr13 74544333 74544445 + 3 NA Intergenic Intergenic -8454 NR_034025 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 423-102 chr17 69658256 69658534 + 3 NA intron (NR_109972, intron 3 of 4) L1MC3|LINE|L1 64408 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 566-201 chr8 136214578 136214874 + 3 NA Intergenic AluSx1|SINE|Alu -316072 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 1211-4 chr17 53318780 53319564 + 3 NA Intergenic L2c|LINE|L2 333667 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 666-121 chr9 34746515 34746859 + 3 NA Intergenic LTR52|LTR|ERVL -17199 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 250-174 chr18 4877409 4877573 + 3 NA Intergenic L1ME3E|LINE|L1 -203691 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 480-112 chr17 58598688 58598872 + 3 NA intron (NM_031272, intron 14 of 31) intron (NM_031272, intron 14 of 31) -54452 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 268-209 chr2 128990254 128990443 + 3 NA Intergenic L1MD1|LINE|L1 125748 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 457-146 chr21 18345786 18346010 + 3 NA intron (NM_002772, intron 10 of 24) intron (NM_002772, intron 10 of 24) 57887 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 809-5 chr11 34409012 34409463 + 3 NA Intergenic Intergenic -29697 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 854-36 chr5 41285051 41285590 + 3 NA Intergenic Intergenic -23851 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 530-209 chr5 155692490 155692788 + 3 NA Intergenic L1M5|LINE|L1 -634118 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 435-148 chr3 18662586 18662826 + 3 NA Intergenic Intergenic -217114 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 637-53 chr18 70790495 70790877 + 3 NA Intergenic MIRb|SINE|MIR -139732 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 381-172 chr19 51677806 51677984 + 3 NA Intergenic LTR33|LTR|ERVL -11539 NM_001316994 147650 Hs.467174 NM_207324 ENSG00000182310 SPACA6 LET7EH|LINC00085|NCRNA00085|SPACA6P sperm acrosome associated 6 protein-coding 336-575 chr9 31459652 31459835 + 3 NA Intergenic L1MCb|LINE|L1 -78253 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 682-33 chr14 88069178 88069526 + 3 NA intron (NR_046094, intron 2 of 3) MLT1H1|LTR|ERVL-MaLR -43040 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 658-73 chr20 39217173 39217524 + 3 NA intron (NR_027124, intron 1 of 3) L1M5|LINE|L1 7400 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 292-398 chr7 10731625 10731784 + 3 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 29028 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 799-10 chr11 98526661 98527174 + 3 NA Intergenic L1ME3D|LINE|L1 -494032 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 225-86 chr14 48766054 48766194 + 3 NA Intergenic L1MA2|LINE|L1 820256 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 844-6 chr10 31226909 31227310 + 3 NA intron (NR_134478, intron 1 of 2) L1ME3|LINE|L1 39226 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 683-50 chr22 34738571 34739029 + 3 NA Intergenic Intergenic 259116 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 898-40 chr8 134438151 134438596 + 3 NA Intergenic MER63C|DNA|hAT-Blackjack -159698 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 1443-2 chr2 134802129 134803010 + 3 NA Intergenic L1ME4b|LINE|L1 -36047 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 703-70 chr5 16258301 16258765 + 3 NA Intergenic Intergenic 78292 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 837-7 chr14 68071487 68072086 + 3 NA intron (NM_133509, intron 7 of 10) L1PA15|LINE|L1 248194 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 635-69 chr3 156808650 156808890 + 3 NA TTS (NR_003284) TTS (NR_003284) 3251 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 332-280 chr2 214419312 214419447 + 3 NA intron (NM_001345929, intron 2 of 2) intron (NM_001345929, intron 2 of 2) 8325 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 403-109 chr15 23784759 23784900 + 3 NA Intergenic MLT-int|LTR|ERVL-MaLR -97524 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 598-103 chr5 11649483 11649724 + 3 NA intron (NM_001288717, intron 2 of 20) AluSg|SINE|Alu -60537 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 429-49 chr11 21816115 21816365 + 3 NA Intergenic Intergenic -376845 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 481-64 chr12 14379032 14379249 + 3 NA intron (NM_001286515, intron 1 of 12) MSTA|LTR|ERVL-MaLR -6141 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 715-59 chr4 49057294 49057724 + 3 NA intron (NM_001286791, intron 15 of 15) MER4A1|LTR|ERV1 70867 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 493-292 chr8 33838937 33839137 + 3 NA Intergenic L1MEd|LINE|L1 -238931 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 501-187 chr4 43714094 43714365 + 3 NA Intergenic AluJb|SINE|Alu -221686 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 450-100 chr16 5435745 5436003 + 3 NA Intergenic L1ME4a|LINE|L1 180376 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 552-207 chr8 87245387 87245764 + 3 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 379160 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 335-180 chr16 6481102 6481342 + 3 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -292587 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 445-60 chr13 68651731 68651923 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 233498 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 406-50 chr11 39324800 39324972 + 3 NA Intergenic Intergenic 676028 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 301-234 chr2 180931193 180931303 + 3 NA Intergenic Intergenic -49137 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 263-132 chr16 48728223 48728428 + 3 NA Intergenic AluJr|SINE|Alu -118145 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 516-47 chr12 41449881 41450118 + 3 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 12260 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 525-161 chr3 86222698 86223025 + 3 NA Intergenic Intergenic -259082 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 557-223 chrX 46036726 46037030 + 3 NA Intergenic Intergenic -185388 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 571-29 chr11 79029654 79029963 + 3 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 372301 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 706-66 chr6 120774673 120774929 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 559679 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 783-22 chr13 96609732 96610104 + 3 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 182689 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 660-94 chr6 77117322 77117763 + 3 NA Intergenic Intergenic 346480 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 359-195 chr18 4935275 4935482 + 3 NA Intergenic L1MEc|LINE|L1 -145804 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 402-120 chr18 10171975 10172140 + 3 NA Intergenic MER57A-int|LTR|ERV1 242313 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 419-14 chr1 95663224 95663515 + 3 NA Intergenic LTR12|LTR|ERV1 153253 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 715-42 chr2 146691630 146692050 + 3 NA Intergenic MER34B-int|LTR|ERV1 104783 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 317-124 chr13 58403072 58403218 + 3 NA Intergenic L1PB4|LINE|L1 -170028 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 371-27 chr1 204499353 204499488 + 3 NA Intergenic L2a|LINE|L2 -9074 NM_002646 5287 Hs.497487 NM_002646 ENSG00000133056 PIK3C2B C2-PI3K phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta protein-coding 504-55 chr12 61103343 61103567 + 3 NA Intergenic L1M1|LINE|L1 1089384 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 345-77 chr10 116764962 116765168 + 3 NA intron (NM_001330164, intron 2 of 12) L1MC5a|LINE|L1 -22499 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 945-14 chr4 31523819 31524419 + 3 NA intron (NR_149121, intron 1 of 2) L1MA4|LINE|L1 17575 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 490-125 chr19 28188900 28189147 + 3 NA Intergenic Intergenic -395083 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 509-178 chr4 132407190 132407369 + 3 NA Intergenic MER92-int|LTR|ERV1 -183810 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 582-24 chr12 14657786 14658159 + 3 NA intron (NM_004963, intron 11 of 26) L1ME3Cz|LINE|L1 38627 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 337-550 chr8 120151657 120151793 + 3 NA intron (NM_021110, intron 2 of 47) MLT1D|LTR|ERVL-MaLR 26623 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 511-229 chr6 64526029 64526303 + 3 NA intron (NM_001292009, intron 26 of 43) L1MD1|LINE|L1 719330 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 603-139 chr6 8769099 8769433 + 3 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) 117057 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 232-98 chr14 57262605 57262734 + 3 NA intron (NM_006544, intron 1 of 17) (TA)n|Simple_repeat|Simple_repeat 6236 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 501-87 chr18 60337513 60337861 + 3 NA Intergenic L1MB5|LINE|L1 35088 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 328-69 chr10 130800613 130800794 + 3 NA Intergenic Intergenic 161965 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 533-250 chr9 88854228 88854580 + 3 NA Intergenic L1ME1|LINE|L1 -108499 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 397-315 chr7 128777646 128777821 + 3 NA Intergenic L1M4a1|LINE|L1 -1943 NM_001708 611 Hs.656404 NM_001708 ENSG00000128617 OPN1SW BCP|BOP|CBT opsin 1, short wave sensitive protein-coding 463-312 chr9 101597388 101597759 + 3 NA intron (NM_133445, intron 6 of 8) intron (NM_133445, intron 6 of 8) -2604 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 384-177 chr2 115611999 115612152 + 3 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 268260 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 549-112 chr2 113033621 113033897 + 3 NA intron (NM_173178, intron 1 of 4) L3|LINE|CR1 19108 NM_173178 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 448-210 chr5 44493121 44493338 + 3 NA Intergenic Intergenic 17053 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 347-535 chr8 136665355 136665571 + 3 NA intron (NR_147196, intron 2 of 5) ERV3-16A3_I-int|LTR|ERVL 134665 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 515-67 chr14 44840364 44840629 + 3 NA Intergenic Intergenic -41370 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 549-119 chr2 148414096 148414444 + 3 NA intron (NM_018328, intron 5 of 14) L1PA15|LINE|L1 -230481 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 579-140 chr6 78158542 78158852 + 3 NA Intergenic Intergenic 380612 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 388-275 chr5 44093037 44093172 + 3 NA Intergenic Intergenic -295628 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 1724 chr22 25472892 25473837 + 3 NA Intergenic AluSx1|SINE|Alu 17718 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 447-154 chr20 54037862 54038068 + 3 NA intron (NM_001366297, intron 3 of 8) intron (NM_001366297, intron 3 of 8) 21055 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 791-28 chr16 73583531 73583943 + 3 NA Intergenic L1MEd|LINE|L1 196932 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 474-25 chr1 244557034 244557263 + 3 NA intron (NM_001130957, intron 9 of 21) L1M3|LINE|L1 95777 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 551-49 chr14 43216022 43216282 + 3 NA Intergenic Intergenic 1291131 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 693-52 chr2 34964544 34964838 + 3 NA Intergenic Intergenic 287134 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 1465-2 chr4 71735367 71736026 + 3 NA Intergenic Intergenic 48383 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 419-308 chr9 35207452 35207677 + 3 NA intron (NM_006377, intron 1 of 38) AluJr|SINE|Alu 45555 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 402-35 chr10 80350530 80350781 + 3 NA intron (NM_001270042, intron 1 of 3) intron (NM_001270042, intron 1 of 3) 5910 NR_070309 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 470-113 chr2 4023945 4024189 + 3 NA Intergenic MIR3|SINE|MIR 49906 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 749-31 chr14 53660325 53660658 + 3 NA Intergenic L1MC1|LINE|L1 287993 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 826-62 chr8 115034215 115034703 + 3 NA Intergenic Intergenic 633554 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 677-87 chr9 28057160 28057522 + 3 NA intron (NM_152570, intron 5 of 6) MER103C|DNA|hAT-Charlie -483475 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 606-160 chr8 85382383 85382588 + 3 NA Intergenic HERVL74-int|LTR|ERVL -4372 NM_001738 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 518-251 chr6 1369322 1369585 + 3 NA Intergenic Intergenic -20123 NM_001452 2295 Hs.484423 NM_001452 ENSG00000137273 FOXF2 FKHL6|FREAC-2|FREAC2 forkhead box F2 protein-coding 774-51 chr20 47096412 47096824 + 3 NA intron (NM_172110, intron 8 of 13) HAL1ME|LINE|L1 -70349 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 479-85 chr17 73677819 73678055 + 3 NA Intergenic L1ME2|LINE|L1 -33492 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 485-324 chrX 82113429 82113706 + 3 NA Intergenic L1MA1|LINE|L1 911465 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 1080-27 chrX 47412120 47412809 + 3 NA exon (NM_003446, exon 4 of 4) exon (NM_003446, exon 4 of 4) 23814 NR_003710 100124540 Hs.693443 NR_003710 ENSG00000221459 SNORA11C - small nucleolar RNA, H/ACA box 11C snoRNA 620-3 chr1 89490423 89490804 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -34216 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 627-125 chr9 78956902 78957319 + 3 NA Intergenic L1ME4b|LINE|L1 188556 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 621-102 chr5 153015141 153015399 + 3 NA Intergenic L1M4c|LINE|L1 -42921 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 421-156 chr2 199177293 199177544 + 3 NA Intergenic L1ME2|LINE|L1 280521 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 598-92 chr3 181422198 181422465 + 3 NA intron (NR_125407, intron 3 of 4) intron (NR_125407, intron 3 of 4) 20155 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 617-39 chr15 23580436 23580784 + 3 NA Intergenic Intergenic 14936 NM_005664 7681 Hs.72964 NM_005664 ENSG00000179455 MKRN3 CPPB2|D15S9|RNF63|ZFP127|ZNF127 makorin ring finger protein 3 protein-coding 752-76 chr8 129046598 129047066 + 3 NA Intergenic L1ME2|LINE|L1 -80831 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 906-3 chr1 93324742 93325191 + 3 NA intron (NR_034089, intron 7 of 8) intron (NR_034089, intron 7 of 8) 20845 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 1443-4 chr4 32726820 32727628 + 3 NA Intergenic MER67C|LTR|ERV1 376186 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 830-14 chr14 53686688 53687092 + 3 NA Intergenic HERVL-int|LTR|ERVL 261594 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 790-4 chr10 18038723 18039279 + 3 NA intron (NM_001282734, intron 11 of 11) intron (NM_001282734, intron 11 of 11) -28439 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 288-411 chr7 61917210 61917366 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1386768 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 735-55 chr3 13907448 13907793 + 3 NA Intergenic L1MA3|LINE|L1 -25436 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 465-242 chr5 153943552 153943716 + 3 NA Intergenic A-rich|Low_complexity|Low_complexity -44647 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 387-320 chr6 143924315 143924629 + 3 NA intron (NM_001013623, intron 6 of 7) L1MA4A|LINE|L1 36938 NM_001317157 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 375-411 chr8 101937990 101938168 + 3 NA intron (NM_001040624, intron 3 of 7) L3|LINE|CR1 -46353 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 886-12 chr17 53016680 53017082 + 3 NA Intergenic Intergenic 31376 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 584-26 chr11 40533974 40534340 + 3 NA intron (NM_020929, intron 2 of 4) MIRb|SINE|MIR -241027 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 526-244 chr8 46345304 46345631 + 3 NA Intergenic ALR/Alpha|Satellite|centr 272176 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 669-27 chr14 65203239 65203644 + 3 NA Intergenic LTR12_|LTR|ERV1 18906 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 475-4 chr1 41792648 41792852 + 3 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 126172 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 657-95 chr8 21400351 21400747 + 3 NA Intergenic L1ME3E|LINE|L1 102310 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 540-172 chr5 28290874 28291187 + 3 NA Intergenic Intergenic -3365 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 372-86 chr11 110876328 110876493 + 3 NA Intergenic L3|LINE|CR1 -163221 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 1059-16 chr8 131539328 131539920 + 3 NA Intergenic MIRb|SINE|MIR -364469 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 611-48 chr16 6245820 6246204 + 3 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 226309 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 1257-8 chr6 133811097 133811586 + 3 NA intron (NR_109982, intron 2 of 8) L2c|LINE|L2 -9806 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 461-122 chr2 31424606 31424837 + 3 NA Intergenic Intergenic -9979 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 799-6 chr10 38818650 38818999 + 3 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 122228 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 770-4 chr10 53486001 53486506 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -714553 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 409-250 chr5 87299039 87299206 + 3 NA intron (NM_022650, intron 1 of 24) MER85|DNA|PiggyBac 24506 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 403-9 chr1 80413379 80413547 + 3 NA Intergenic Intergenic -122292 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 302-211 chr2 61344454 61344655 + 3 NA intron (NM_014709, intron 15 of 79) intron (NM_014709, intron 15 of 79) 72823 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 279-226 chr20 58183142 58183266 + 3 NA Intergenic Intergenic 32302 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 621-67 chr21 19017841 19018070 + 3 NA Intergenic L1M5|LINE|L1 -258143 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 398-130 chr16 74008767 74008974 + 3 NA Intergenic L1M5|LINE|L1 206651 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 583-57 chr14 62324771 62325016 + 3 NA Intergenic L1MA1|LINE|L1 -184920 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 429-113 chr16 65454361 65454607 + 3 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 121816 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 606-106 chr3 35286852 35287157 + 3 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 107019 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 465-259 chr6 143720181 143720371 + 3 NA intron (NM_001100165, intron 2 of 11) L2a|LINE|L2 42311 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 466-227 chr6 69890292 69890553 + 3 NA intron (NM_001858, intron 2 of 50) L2|LINE|L2 23866 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 630-104 chr5 13879876 13880190 + 3 NA intron (NM_001369, intron 21 of 78) L1M3de|LINE|L1 64447 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 419-281 chr7 128660185 128660429 + 3 NA non-coding (NR_024368, exon 5 of 5) non-coding (NR_024368, exon 5 of 5) -11959 NM_001128926 346653 Hs.445236 NM_001012454 ENSG00000205085 FAM71F2 FAM137B family with sequence similarity 71 member F2 protein-coding 360-241 chr2 154644588 154644753 + 3 NA Intergenic Intergenic -53911 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 620-102 chr5 9523049 9523444 + 3 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 11913 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 464-161 chr3 70712484 70712645 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 352360 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 290-313 chr4 65121125 65121270 + 3 NA Intergenic L1MCa|LINE|L1 -116697 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 509-238 chr7 113960447 113960723 + 3 NA Intergenic L1PA13|LINE|L1 -41576 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 553-23 chr10 98437117 98437331 + 3 NA intron (NM_001322476, intron 3 of 19) L2a|LINE|L2 -5864 NR_039833 100616482 NR_039833 ENSG00000264610 MIR4685 - microRNA 4685 ncRNA 469-35 chr10 69537373 69537532 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 35970 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 515-184 chr4 76464898 76465170 + 3 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 29805 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 719-29 chr14 98392474 98392820 + 3 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -318966 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 805-12 chr14 27305372 27305804 + 3 NA Intergenic Intergenic -307000 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 1074-11 chr4 95655350 95655829 + 3 NA Intergenic L1PA16|LINE|L1 -106616 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 656-90 chr5 10848125 10848469 + 3 NA Intergenic L1MA3|LINE|L1 -87063 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 369-80 chr12 39690496 39690692 + 3 NA intron (NM_001031748, intron 10 of 12) intron (NM_001031748, intron 10 of 12) 64411 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 461-206 chr5 19763231 19763446 + 3 NA intron (NM_001349559, intron 3 of 12) L2|LINE|L2 122934 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 892-32 chr4 154587773 154588130 + 3 NA intron (NM_021871, intron 3 of 4) intron (NM_021871, intron 3 of 4) 2791 NM_021871 2243 Hs.351593 NM_000508 ENSG00000171560 FGA Fib2 fibrinogen alpha chain protein-coding 493-146 chr2 69260965 69261156 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 126167 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 570-98 chr18 68396712 68396916 + 3 NA Intergenic Intergenic 318294 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 386-156 chr2 4698729 4698900 + 3 NA Intergenic MIRb|SINE|MIR -42592 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 544-211 chr7 52760811 52761081 + 3 NA Intergenic Intergenic -274687 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 835-55 chr8 101900627 101901143 + 3 NA intron (NM_001040624, intron 4 of 7) L1MD2|LINE|L1 -83547 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 514-143 chr2 67001095 67001306 + 3 NA Intergenic Intergenic -78710 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 682-103 chr8 118283457 118283873 + 3 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -171846 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 584-133 chr5 62968515 62968871 + 3 NA Intergenic Intergenic 389874 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 494-29 chr10 83252796 83253102 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR 424140 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 333-588 chr8 127034544 127034669 + 3 NA Intergenic Intergenic 21452 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 601-8 chr1 217204902 217205255 + 3 NA Intergenic L1MA3|LINE|L1 -67376 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 833-18 chr2 197622885 197623276 + 3 NA intron (NM_144629, intron 5 of 8) Tigger1|DNA|TcMar-Tigger 52507 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 996-9 chr12 99095286 99095705 + 3 NA intron (NR_110095, intron 1 of 4) intron (NR_110095, intron 1 of 4) 2136 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 591-78 chr2 174655177 174655495 + 3 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) -20731 NM_003387 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 664-122 chr9 12001547 12001894 + 3 NA Intergenic L1MA5|LINE|L1 -691665 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 441-178 chr4 35288902 35289074 + 3 NA Intergenic Helitron1Nb_Mam|RC|Helitron 954951 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 619-35 chr12 42967138 42967499 + 3 NA Intergenic Intergenic -187997 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 733-41 chr2 177848063 177848568 + 3 NA intron (NM_001077197, intron 6 of 20) intron (NM_001077197, intron 6 of 20) 40441 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 501-60 chr13 76390351 76390575 + 3 NA Intergenic Intergenic -455331 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 533-39 chr12 91856079 91856343 + 3 NA Intergenic Intergenic 285502 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 441-96 chr17 68993366 68993694 + 3 NA intron (NM_080283, intron 26 of 38) intron (NM_080283, intron 26 of 38) -11184 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 585-66 chr2 12691454 12691806 + 3 NA Intergenic Intergenic -25242 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 545-93 chr17 57699268 57699603 + 3 NA Intergenic L3|LINE|CR1 45864 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 671-13 chr10 26798868 26799279 + 3 NA intron (NM_001012752, intron 2 of 9) L1MEd|LINE|L1 62014 NM_001348029 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 495-73 chr15 100387321 100387527 + 3 NA intron (NR_120374, intron 1 of 4) MER21C|LTR|ERVL 14485 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 779-27 chr18 34577243 34577876 + 3 NA intron (NM_001198945, intron 1 of 10) L1PB1|LINE|L1 -15776 NM_001128175 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 294-468 chr8 79801049 79801266 + 3 NA intron (NR_125410, intron 3 of 3) L2a|LINE|L2 33015 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 465-244 chr5 156290502 156290752 + 3 NA Intergenic MIRb|SINE|MIR -36130 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 218-122 chr17 34411220 34411356 + 3 NA Intergenic L2c|LINE|L2 -48055 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 556-129 chr20 51856928 51857211 + 3 NA intron (NR_110016, intron 1 of 2) intron (NR_110016, intron 1 of 2) 5844 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 504-127 chr2 98174815 98175066 + 3 NA intron (NM_001345864, intron 2 of 21) L1M4|LINE|L1 25407 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 1010-12 chr8 84416694 84417097 + 3 NA intron (NM_001354308, intron 1 of 9) intron (NM_001354308, intron 1 of 9) 1411 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 346-524 chr9 83741102 83741322 + 3 NA intron (NM_025211, intron 12 of 12) intron (NM_025211, intron 12 of 12) 32881 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 526-237 chr8 20890635 20890812 + 3 NA Intergenic Intergenic -62910 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 758-2 chr1 117139379 117139794 + 3 NA Intergenic L1M5|LINE|L1 -17837 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 647-6 chr1 163631314 163631683 + 3 NA Intergenic L1M2|LINE|L1 -208307 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 517-196 chr4 73711872 73712296 + 3 NA Intergenic L2a|LINE|L2 -28485 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 925-27 chr5 29816679 29817080 + 3 NA Intergenic Intergenic -63681 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 372-471 chr8 35285467 35285655 + 3 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 50086 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 553-60 chr14 32823508 32823843 + 3 NA exon (NM_004274, exon 13 of 14) exon (NM_004274, exon 13 of 14) -115204 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 594-84 chr2 235401031 235401356 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -92850 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 445-229 chr6 17129683 17129937 + 3 NA intron (NM_001190766, intron 4 of 4) AluY|SINE|Alu 27552 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 834-13 chr15 86754257 86754854 + 3 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -178325 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 479-127 chr20 38677030 38677220 + 3 NA Intergenic Intergenic -47361 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 423-271 chr7 71763350 71763632 + 3 NA Intergenic L1MC1|LINE|L1 -455721 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 351-44 chr10 56116368 56116570 + 3 NA Intergenic Intergenic 244790 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 815-5 chr1 218661867 218662261 + 3 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 151969 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 345-452 chr5 174874282 174874478 + 3 NA Intergenic L1ME4c|LINE|L1 121351 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 398-70 chr12 26007817 26007996 + 3 NA intron (NM_001164747, intron 2 of 5) intron (NM_001164747, intron 2 of 5) 34151 NM_001164747 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 501-146 chr21 28577825 28578198 + 3 NA Intergenic L2|LINE|L2 38693 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 773-40 chr5 164992492 164992982 + 3 NA Intergenic Intergenic 522458 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 921-21 chr6 55706075 55706432 + 3 NA Intergenic Intergenic -127039 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 579-109 chr4 41949388 41949754 + 3 NA intron (NM_018126, intron 6 of 6) intron (NM_018126, intron 6 of 6) 14142 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 949-19 chr6 64919550 64920101 + 3 NA intron (NM_001292009, intron 15 of 43) intron (NM_001292009, intron 15 of 43) -381593 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 535-152 chr20 8490441 8490646 + 3 NA intron (NM_182734, intron 3 of 32) L1MEc|LINE|L1 241839 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 604-87 chr2 118482434 118482801 + 3 NA Intergenic AluJo|SINE|Alu 120349 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 671-10 chr1 229807942 229808324 + 3 NA Intergenic MamGypsy2-I|LTR|Gypsy 77685 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 523-184 chr3 118420068 118420309 + 3 NA Intergenic Intergenic -221580 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 195-23 chr10 53980626 53980719 + 3 NA intron (NM_001354411, intron 22 of 34) MIRb|SINE|MIR -505558 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 367-41 chr10 30121630 30121879 + 3 NA Intergenic Intergenic -6260 NM_001350021 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 565-162 chr6 118573851 118574073 + 3 NA intron (NM_001042475, intron 2 of 12) intron (NM_001042475, intron 2 of 12) 25666 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 372-3 chr1 14084858 14085024 + 3 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 335032 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 839-55 chr8 135882643 135883205 + 3 NA Intergenic Intergenic 425468 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 433-34 chr10 117224834 117225028 + 3 NA Intergenic L2b|LINE|L2 -16183 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 591-169 chr8 132064052 132064425 + 3 NA intron (NM_001145095, intron 15 of 15) intron (NM_001145095, intron 15 of 15) -4856 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 375-343 chr5 157181276 157181438 + 3 NA intron (NM_005546, intron 1 of 16) intron (NM_005546, intron 1 of 16) 461 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 440-32 chr10 127767437 127767638 + 3 NA Intergenic Intergenic 30352 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 443-215 chr4 33719769 33719924 + 3 NA Intergenic L1MA8|LINE|L1 320047 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 517-71 chr13 101988875 101989136 + 3 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -21259 NR_039603 100616110 NR_039603 ENSG00000265164 MIR2681 - microRNA 2681 ncRNA 333-199 chr18 1541937 1542079 + 3 NA Intergenic Intergenic -182379 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 501-148 chr22 26970603 26970845 + 3 NA Intergenic L2c|LINE|L2 67432 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 782-35 chr20 7654954 7655543 + 3 NA Intergenic Intergenic 283640 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 850-35 chr5 3074205 3074708 + 3 NA Intergenic Intergenic -103379 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 384-6 chr1 64226752 64226971 + 3 NA intron (NR_158769, intron 6 of 8) L1M5|LINE|L1 23238 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 689-103 chr9 93747135 93747558 + 3 NA Intergenic L1PB3|LINE|L1 -72011 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 332-85 chr11 25768058 25768231 + 3 NA Intergenic Intergenic -420979 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 273-169 chr17 52409980 52410142 + 3 NA intron (NR_146898, intron 1 of 3) L2c|LINE|L2 19539 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 471-24 chr10 30789749 30790004 + 3 NA Intergenic L2a|LINE|L2 66657 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 507-206 chr5 110095210 110095436 + 3 NA Intergenic L1M1|LINE|L1 212141 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 547-254 chr8 134731036 134731379 + 3 NA Intergenic L1ME3A|LINE|L1 -18176 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 496-226 chr5 171694384 171694618 + 3 NA Intergenic AluSx|SINE|Alu -91371 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 782-25 chr16 63002754 63003231 + 3 NA Intergenic Intergenic -966554 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 260-255 chr3 5279669 5279842 + 3 NA Intergenic L1M1|LINE|L1 -29500 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 454-32 chr10 85330035 85330290 + 3 NA Intergenic L1MEg|LINE|L1 102610 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 470-148 chr2 231367652 231367820 + 3 NA intron (NM_001352754, intron 23 of 24) AluSq2|SINE|Alu 5028 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 1640 chr1 189267896 189268844 + 3 NA Intergenic MER52-int|LTR|ERV1 1207640 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 453-157 chr3 27354223 27354440 + 3 NA intron (NM_152534, intron 2 of 38) intron (NM_152534, intron 2 of 38) 15052 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 795-6 chr1 112275532 112276028 + 3 NA Intergenic Intergenic -120434 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 762-27 chr16 62717360 62717666 + 3 NA Intergenic Intergenic -681075 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 502-21 chr1 212506332 212506516 + 3 NA Intergenic L1PB1|LINE|L1 -39270 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 382-362 chr6 112081762 112082023 + 3 NA intron (NM_016262, intron 4 of 11) intron (NM_016262, intron 4 of 11) 5590 NM_016262 51175 Hs.34851 NM_016262 ENSG00000074935 TUBE1 TUBE|dJ142L7.2 tubulin epsilon 1 protein-coding 718-85 chr7 62796983 62797331 + 3 NA Intergenic ALR/Alpha|Satellite|centr 506899 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 485-137 chr2 102128393 102128693 + 3 NA intron (NM_001320980, intron 1 of 11) MIR|SINE|MIR -13248 NM_001320981 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 439-240 chr5 176497240 176497459 + 3 NA intron (NM_014613, intron 8 of 10) intron (NM_014613, intron 8 of 10) 40053 NM_014901 22838 Hs.434888 NM_014901 ENSG00000146083 RNF44 - ring finger protein 44 protein-coding 685-87 chr7 28910762 28911228 + 3 NA Intergenic Intergenic 47335 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 275-256 chr3 191758530 191758692 + 3 NA Intergenic Intergenic 297448 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 466-86 chr15 87145858 87146094 + 3 NA Intergenic Intergenic -157550 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 447-252 chr8 13547550 13547740 + 3 NA intron (NM_001348082, intron 1 of 16) Zaphod|DNA|hAT-Tip100 -19224 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 835-27 chr2 30277915 30278251 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR 46549 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 710-94 chr8 118713504 118713954 + 3 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -91766 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 1152-11 chr8 145037980 145038675 + 3 NA Intergenic Intergenic -14140 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 487-35 chr10 21254691 21254981 + 3 NA Intergenic Charlie17b|DNA|hAT-Charlie 80534 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 402-115 chr17 68903535 68903770 + 3 NA intron (NM_001288985, intron 19 of 39) intron (NM_001288985, intron 19 of 39) 51740 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 510 chr1 37424586 37424801 + 3 NA Intergenic Intergenic 49750 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 407-32 chr10 66938510 66938739 + 3 NA intron (NM_178011, intron 2 of 2) Tigger2a|DNA|TcMar-Tigger 12588 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 551-126 chr3 190211470 190211676 + 3 NA Intergenic L1MA2|LINE|L1 -89136 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 556-68 chr14 78551206 78551531 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 147649 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 503-184 chr22 34468429 34468643 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 529380 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 455-146 chr20 38239843 38240100 + 3 NA intron (NM_001348708, intron 3 of 11) AluJr|SINE|Alu -20204 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 397-52 chr11 82690489 82690797 + 3 NA Intergenic Intergenic 43221 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 908-42 chr7 90273563 90274176 + 3 NA intron (NM_001039706, intron 8 of 22) MLT1A0|LTR|ERVL-MaLR 28695 NM_001363438 79846 Hs.521014 NM_024788 ENSG00000105792 CFAP69 C7orf63|FAP69|SPGF24 cilia and flagella associated protein 69 protein-coding 397-103 chr15 60439058 60439228 + 3 NA intron (NM_024611, intron 12 of 15) Tigger6a|DNA|TcMar-Tigger 39999 NM_001276385 79664 Hs.200943 NM_024611 ENSG00000128915 ICE2 BRCC1|NARG2 interactor of little elongation complex ELL subunit 2 protein-coding 293-457 chr8 127730353 127730471 + 3 NA non-coding (NR_117101, exon 2 of 2) non-coding (NR_117101, exon 2 of 2) 3555 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 432-276 chr7 99662821 99662993 + 3 NA non-coding (NR_033807, exon 9 of 13) non-coding (NR_033807, exon 9 of 13) 17089 NM_001291829 1577 Hs.571258 NM_000777 ENSG00000106258 CYP3A5 CP35|CYPIIIA5|P450PCN3|PCN3 cytochrome P450 family 3 subfamily A member 5 protein-coding 511-209 chr5 104531649 104532013 + 3 NA Intergenic Intergenic -567643 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 381-328 chr6 40373977 40374145 + 3 NA Intergenic Intergenic -4276 NR_160958 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 386-173 chr2 68491091 68491374 + 3 NA intron (NM_173545, intron 2 of 9) intron (NM_173545, intron 2 of 9) 23647 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 234-72 chr12 5751320 5751470 + 3 NA intron (NM_001278596, intron 10 of 25) intron (NM_001278596, intron 10 of 25) 193864 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 1300-6 chr7 38665631 38666342 + 3 NA Intergenic L1PA16|LINE|L1 21103 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 513-112 chr18 46364426 46364605 + 3 NA intron (NM_001256758, intron 1 of 5) intron (NM_001256758, intron 1 of 5) 30291 NR_046357 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 502-17 chr1 183508723 183508980 + 3 NA intron (NM_001331007, intron 2 of 23) intron (NM_001331007, intron 2 of 23) 36352 NM_001174061 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 497-6 chr1 96187210 96187490 + 3 NA Intergenic L3b|LINE|CR1 186775 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 476-139 chr2 67490991 67491226 + 3 NA Intergenic UCON132b|DNA|hAT-Tip100 93775 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 920-16 chr19 31035410 31036013 + 3 NA Intergenic L1MEf|LINE|L1 -131799 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 362-396 chr6 166062952 166063125 + 3 NA Intergenic Intergenic -34682 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 1953 chr5 96266723 96267818 + 3 NA intron (NR_130776, intron 1 of 4) L1MA4|LINE|L1 164889 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 791-7 chr1 239534641 239535241 + 3 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) -94132 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 238-293 chr5 34740604 34740709 + 3 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 53097 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 293-330 chr5 15551758 15551929 + 3 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 50405 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 553-44 chr12 28646747 28647131 + 3 NA Intergenic L1MCa|LINE|L1 -456201 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 425-165 chr20 52513731 52513893 + 3 NA Intergenic Intergenic -107026 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 420-265 chr7 22198877 22199076 + 3 NA intron (NM_012294, intron 9 of 25) intron (NM_012294, intron 9 of 25) -4166 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 323-570 chr8 140027346 140027491 + 3 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 73117 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 442-225 chr5 25874589 25874800 + 3 NA Intergenic L1MA3|LINE|L1 683741 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 831-41 chr5 156870631 156871064 + 3 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 20552 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 564-36 chr11 101802941 101803441 + 3 NA Intergenic Intergenic -111819 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 368-72 chr11 20979120 20979369 + 3 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 309658 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 341-106 chr12 14498601 14498844 + 3 NA 3' UTR (NM_018179, exon 15 of 15) 3' UTR (NM_018179, exon 15 of 15) -69010 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 1077-17 chr8 122336110 122336880 + 3 NA Intergenic Intergenic 232149 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 1011-7 chr10 129590268 129590690 + 3 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 123238 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 693-99 chr8 59813825 59814189 + 3 NA Intergenic L1MEd|LINE|L1 467393 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 355-78 chr11 7761185 7761390 + 3 NA Intergenic L1MB8|LINE|L1 35655 NM_153444 120065 Hs.351824 NM_153444 ENSG00000183303 OR5P2 JCG3|JCG4 olfactory receptor family 5 subfamily P member 2 protein-coding 323-453 chr6 40224935 40225121 + 3 NA Intergenic Intergenic 130978 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 505-98 chr15 46157670 46157936 + 3 NA Intergenic L1MA1|LINE|L1 452608 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 589-44 chr17 65119127 65119421 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -18064 NM_001165933 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 798-72 chrX 99244705 99245042 + 3 NA Intergenic L1PB3|LINE|L1 1165400 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 495-241 chr7 111778127 111778431 + 3 NA exon (NM_014705, exon 35 of 52) exon (NM_014705, exon 35 of 52) -30226 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 544-161 chr4 43989665 43989912 + 3 NA Intergenic Intergenic -27073 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 229-392 chr8 104282327 104282443 + 3 NA Intergenic Tigger11a|DNA|TcMar-Tigger -57411 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 654-55 chr19 36443616 36443916 + 3 NA Intergenic L1MA3|LINE|L1 22592 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 352-193 chr18 21429545 21429720 + 3 NA intron (NM_001142966, intron 7 of 32) L1M4|LINE|L1 171072 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 558-50 chr14 25436363 25436753 + 3 NA Intergenic Intergenic -386261 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 593-116 chr5 46067804 46068014 + 3 NA Intergenic ALR/Alpha|Satellite|centr -371529 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 448-235 chr6 40517099 40517336 + 3 NA intron (NM_020737, intron 1 of 2) UCON132b|DNA|hAT-Tip100 70147 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 682-24 chr12 51660146 51660565 + 3 NA intron (NM_001369788, intron 1 of 25) intron (NM_001369788, intron 1 of 25) 69119 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 690-42 chr15 52455395 52455921 + 3 NA intron (NM_001142495, intron 1 of 39) L1MA4A|LINE|L1 73222 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 370-34 chr10 16786121 16786283 + 3 NA intron (NM_152724, intron 1 of 7) MER20|DNA|hAT-Charlie 31222 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 614-132 chr8 71084116 71084458 + 3 NA Intergenic Intergenic 272419 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 436-335 chrX 7793060 7793244 + 3 NA Intergenic Intergenic -49110 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 785-33 chr21 32055580 32056046 + 3 NA Intergenic Intergenic 30482 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 378-200 chr19 22861021 22861175 + 3 NA Intergenic Intergenic 28807 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 513-89 chr15 86489079 86489291 + 3 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -172217 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 341-377 chr4 42975126 42975321 + 3 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 81957 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 259-139 chr15 71558745 71558902 + 3 NA intron (NM_001286429, intron 1 of 11) L1ME3F|LINE|L1 11587 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 398-207 chr3 84917674 84917850 + 3 NA Intergenic L1MA7|LINE|L1 35672 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 454-110 chr16 8774500 8774661 + 3 NA intron (NM_020686, intron 12 of 15) UCON37|Unknown|Unknown 23059 NM_015421 25880 Hs.513330 NM_015421 ENSG00000184857 TMEM186 C16orf51 transmembrane protein 186 protein-coding 945-11 chr2 101671637 101672096 + 3 NA Intergenic Intergenic -25837 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 543-239 chr7 128820352 128820782 + 3 NA intron (NM_001367763, intron 12 of 12) L3|LINE|CR1 -9839 NM_001127487 2318 Hs.58414 NM_001458 ENSG00000128591 FLNC ABP-280|ABP280A|ABPA|ABPL|CMH26|FLN2|MFM5|MPD4|RCM5 filamin C protein-coding 517-279 chr8 128433291 128433621 + 3 NA intron (NR_121672, intron 2 of 7) L1PA16|LINE|L1 131223 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 705-88 chr6 93399853 93400100 + 3 NA intron (NM_004440, intron 3 of 16) intron (NM_004440, intron 3 of 16) 19583 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 527-165 chr22 44529993 44530268 + 3 NA Intergenic L1ME3Cz|LINE|L1 -31897 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 459-109 chr17 61109289 61109499 + 3 NA intron (NM_001330413, intron 23 of 25) L1PB1|LINE|L1 258310 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 390-400 chr8 133845296 133845547 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -41075 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 203-134 chr20 55828716 55828836 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR 176743 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 248-406 chr8 104805001 104805138 + 3 NA Intergenic Intergenic -216045 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 420-261 chr6 137680471 137680643 + 3 NA Intergenic L1MC4|LINE|L1 14911 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 635-111 chr8 110961385 110961698 + 3 NA intron (NR_125417, intron 5 of 5) intron (NR_125417, intron 5 of 5) 65892 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 488-163 chr21 20678542 20678780 + 3 NA Intergenic Intergenic 124447 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 372-526 chrX 68136926 68137097 + 3 NA intron (NM_002547, intron 15 of 24) intron (NM_002547, intron 15 of 24) 296484 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 383-257 chr3 134674679 134674933 + 3 NA Intergenic L1MB7|LINE|L1 -23784 NM_178554 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 477-161 chr2 124417593 124417852 + 3 NA intron (NM_130773, intron 4 of 23) intron (NM_130773, intron 4 of 23) 392435 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 376-262 chr3 165969859 165970118 + 3 NA Intergenic L1PREC2|LINE|L1 -132565 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 323-346 chr3 147526093 147526227 + 3 NA Intergenic L1PA13|LINE|L1 104833 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 568-25 chr11 38347102 38347347 + 3 NA Intergenic Intergenic 299132 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 553-11 chr1 209497402 209497643 + 3 NA Intergenic L1MA4|LINE|L1 65389 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 603-71 chr18 48045536 48045942 + 3 NA intron (NM_001371286, intron 3 of 4) L2c|LINE|L2 91409 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 665-74 chr5 35689803 35690212 + 3 NA intron (NM_024867, intron 10 of 36) intron (NM_024867, intron 10 of 36) 72144 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 702-90 chr7 3629320 3629601 + 3 NA intron (NM_152744, intron 2 of 44) L1MEc|LINE|L1 328208 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 241-33 chr10 21980309 21980421 + 3 NA intron (NM_022365, intron 1 of 11) L1MC4a|LINE|L1 23365 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 420-224 chr5 39457216 39457431 + 3 NA Intergenic Intergenic -32090 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 746-63 chr5 124335953 124336373 + 3 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 102357 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 534-86 chr16 73234929 73235207 + 3 NA Intergenic AluYh3|SINE|Alu -90621 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 779-58 chr9 32965521 32965916 + 3 NA Intergenic Intergenic 35858 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 698-17 chr11 65339821 65340213 + 3 NA intron (NM_001330308, intron 1 of 11) intron (NM_001330308, intron 1 of 11) 6165 NM_001330308 5977 Hs.13495 NM_006268 ENSG00000133884 DPF2 CSS7|REQ|UBID4|ubi-d4 double PHD fingers 2 protein-coding 512-199 chr4 126067089 126067333 + 3 NA Intergenic Intergenic 559952 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 318-416 chr4 150639367 150639535 + 3 NA intron (NM_001367550, intron 37 of 56) intron (NM_001367550, intron 37 of 56) 57300 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 466-36 chr10 107788859 107789172 + 3 NA Intergenic Intergenic 280278 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 814-5 chr10 25826630 25826987 + 3 NA Intergenic AluSx1|SINE|Alu 106902 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 508-16 chr1 221138905 221139209 + 3 NA Intergenic L3|LINE|CR1 197239 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 525-93 chr17 71573977 71574168 + 3 NA Intergenic Intergenic -371893 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 489-271 chr9 110908738 110908976 + 3 NA intron (NM_001351417, intron 5 of 5) intron (NM_001351417, intron 5 of 5) 127923 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 301-28 chr1 230817682 230817811 + 3 NA Intergenic MER31A|LTR|ERV1 38261 NM_001136495 84886 Hs.520494 NM_032800 ENSG00000119280 C1orf198 - chromosome 1 open reading frame 198 protein-coding 283-140 chr14 78826909 78827021 + 3 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -373017 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 659-26 chr12 90233212 90233589 + 3 NA Intergenic Charlie7|DNA|hAT-Charlie -59918 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 512-139 chr2 210596532 210596802 + 3 NA intron (NR_163592, intron 3 of 27) intron (NR_163592, intron 3 of 27) 3312 NR_163592 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 521-155 chr3 7525424 7525765 + 3 NA intron (NR_046606, intron 1 of 2) L1PA17|LINE|L1 9690 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 641-105 chr7 154203322 154203608 + 3 NA intron (NM_130797, intron 1 of 25) intron (NM_130797, intron 1 of 25) -101694 NM_001290252 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 465-263 chr6 164230472 164230696 + 3 NA Intergenic Intergenic -559100 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 670-95 chr5 28997425 28997840 + 3 NA Intergenic MER70A|LTR|ERVL -67612 NR_109948 101929645 Hs.531878 NR_109948 LOC101929645 - uncharacterized LOC101929645 ncRNA 900-9 chr12 126016349 126016987 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -33294 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 491-109 chr2 12826026 12826189 + 3 NA Intergenic Intergenic 88740 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 581-47 chr14 98783779 98784061 + 3 NA Intergenic HAL1ME|LINE|L1 72307 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 526-266 chr9 108048368 108048602 + 3 NA Intergenic Intergenic -558716 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 711-14 chr12 42617208 42617550 + 3 NA intron (NR_110042, intron 5 of 5) LTR49-int|LTR|ERV1 -27633 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 367-192 chr2 37674212 37674381 + 3 NA Intergenic Intergenic -1761 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 1068-9 chr17 53307435 53308106 + 3 NA Intergenic L1M3|LINE|L1 322265 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 425-152 chr2 165554295 165554567 + 3 NA intron (NM_001172173, intron 3 of 6) L2a|LINE|L2 -17905 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 1467-7 chr5 95418523 95419590 + 3 NA intron (NM_152548, intron 4 of 9) intron (NM_152548, intron 4 of 9) 27690 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 331-327 chr21 35300022 35300257 + 3 NA Intergenic Intergenic -250841 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 484-4 chr1 48333607 48333860 + 3 NA intron (NM_001286238, intron 11 of 12) L1PREC2|LINE|L1 111017 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 386-108 chr14 83817101 83817265 + 3 NA Intergenic Intergenic 1174551 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 592-52 chr14 83858673 83858961 + 3 NA Intergenic L1MCc|LINE|L1 1216185 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 915-7 chr19 40026918 40027286 + 3 NA Intergenic L1M4b|LINE|L1 29129 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 506-189 chr3 139548721 139548962 + 3 NA intron (NR_121609, intron 3 of 4) intron (NR_121609, intron 3 of 4) -9099 NM_001130992 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 454-63 chr11 122339686 122339876 + 3 NA intron (NR_137179, intron 1 of 4) L4_A_Mam|LINE|RTE-X 28207 NR_137192 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 1197 chr10 66116077 66116716 + 3 NA intron (NM_001127384, intron 13 of 17) L1ME1|LINE|L1 544971 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 351-436 chr7 22069975 22070199 + 3 NA Intergenic Intergenic 123658 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 437-199 chr4 148622335 148622524 + 3 NA Intergenic L1MB1|LINE|L1 -177731 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 1030-15 chr2 223066923 223067606 + 3 NA Intergenic Intergenic 15334 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 361-391 chr6 83994854 83995008 + 3 NA Intergenic Intergenic -38841 NM_138409 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 351-31 chr1 237533469 237533629 + 3 NA intron (NM_001035, intron 25 of 104) L1ME3F|LINE|L1 62430 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 1036-20 chr5 13649988 13650406 + 3 NA Intergenic Intergenic 294283 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 442-294 chr8 120665805 120665982 + 3 NA intron (NM_021021, intron 2 of 6) L1ME1|LINE|L1 -95360 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 585-105 chr4 54856674 54856999 + 3 NA Intergenic Intergenic 198908 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 778-41 chr20 56232939 56233301 + 3 NA Intergenic AluJb|SINE|Alu -15612 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 412-324 chr8 69173144 69173315 + 3 NA Intergenic L1MB2|LINE|L1 -69039 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 521-85 chr14 85999979 86000282 + 3 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 65452 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 887-4 chr10 81431847 81432231 + 3 NA Intergenic L1MC1|LINE|L1 -443155 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 831-18 chr19 36799438 36799987 + 3 NA intron (NR_040028, intron 1 of 3) LTR5B|LTR|ERVK 2149 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 691-52 chr3 94834705 94835016 + 3 NA Intergenic L1PREC2|LINE|L1 -103403 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 363-264 chr20 54379384 54379601 + 3 NA Intergenic Intergenic -96101 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 375-255 chr22 43560301 43560541 + 3 NA intron (NM_198856, intron 24 of 29) intron (NM_198856, intron 24 of 29) 44167 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 298-508 chrX 27533239 27533466 + 3 NA Intergenic AluJo|SINE|Alu -56992 NM_001353450 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 325-136 chr12 96647740 96647982 + 3 NA intron (NM_001306084, intron 33 of 67) intron (NM_001306084, intron 33 of 67) 158284 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 412-299 chr7 9150041 9150232 + 3 NA Intergenic Intergenic -484134 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 314-300 chr2 123707442 123707629 + 3 NA Intergenic L1MB4|LINE|L1 317639 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 383-131 chr15 69068514 69068665 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -12261 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 574-108 chr3 80251282 80251537 + 3 NA Intergenic L1PA10|LINE|L1 -483411 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 576-111 chr3 155515535 155515787 + 3 NA intron (NM_001349252, intron 11 of 24) intron (NM_001349252, intron 11 of 24) 29858 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 880-29 chr4 34423276 34423988 + 3 NA Intergenic Intergenic -153885 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 459-283 chr7 74183625 74183800 + 3 NA intron (NM_031992, intron 1 of 5) intron (NM_031992, intron 1 of 5) -7486 NR_030321 693175 NR_030321 ENSG00000207741 MIR590 MIRN590|hsa-mir-590|mir-590 microRNA 590 ncRNA 570-134 chr3 38777257 38777609 + 3 NA intron (NM_006514, intron 3 of 26) L1M5|LINE|L1 16577 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 579-60 chr18 75458739 75459099 + 3 NA Intergenic Intergenic -31216 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 449-278 chr8 112166436 112166613 + 3 NA Intergenic Intergenic -476969 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 214-314 chr8 48772687 48772802 + 3 NA Intergenic Intergenic -37433 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 376-21 chr1 187091795 187092018 + 3 NA promoter-TSS (NR_126347) promoter-TSS (NR_126347) -936 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 759-76 chr8 135053658 135054001 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -180302 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 195-219 chr6 147119614 147119768 + 3 NA intron (NR_034115, intron 3 of 10) MIR|SINE|MIR -39234 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 552-80 chr16 20259624 20259923 + 3 NA Intergenic MER4CL34|LTR|ERV1 67740 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 755-51 chr5 59855941 59856444 + 3 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 37534 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 584-15 chr1 230494949 230495151 + 3 NA Intergenic Intergenic -68718 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 580-194 chr8 40780708 40781010 + 3 NA intron (NM_024645, intron 2 of 6) L1MB7|LINE|L1 116967 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 682-40 chr17 69975831 69976294 + 3 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 14355 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 425-306 chr8 99488340 99488516 + 3 NA intron (NM_017890, intron 25 of 61) intron (NM_017890, intron 25 of 61) 48302 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 335-586 chrX 94815881 94816120 + 3 NA Intergenic Intergenic 247226 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 644-102 chr8 60180156 60180519 + 3 NA Intergenic MIR|SINE|MIR 101063 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 375-449 chr9 79019018 79019152 + 3 NA Intergenic Intergenic 126581 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 490-286 chr8 60062958 60063133 + 3 NA Intergenic Intergenic 218355 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 390-168 chr19 56551288 56551542 + 3 NA 3' UTR (NM_001308440, exon 7 of 7) 3' UTR (NM_001308440, exon 7 of 7) 12467 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 415-71 chr14 47690669 47690916 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -15838 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 591-15 chr10 89612910 89613340 + 3 NA intron (NM_148977, intron 1 of 6) intron (NM_148977, intron 1 of 6) -20298 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 396-46 chr10 43289830 43290066 + 3 NA Intergenic AluSx1|SINE|Alu -22883 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 549-11 chr1 154302961 154303231 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -17997 NM_080429 89872 Hs.259048 NM_080429 ENSG00000143595 AQP10 AQPA_HUMAN aquaporin 10 protein-coding 378-129 chr14 37516756 37517050 + 3 NA intron (NM_138731, intron 13 of 13) intron (NM_138731, intron 13 of 13) 78346 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 571-30 chr11 81679933 81680233 + 3 NA Intergenic L1PB4|LINE|L1 210753 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 375-393 chr7 136471464 136471670 + 3 NA Intergenic L1ME3A|LINE|L1 -397085 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 508-140 chr22 48723080 48723403 + 3 NA intron (NM_001082967, intron 3 of 3) intron (NM_001082967, intron 3 of 3) -57054 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 569-173 chr8 9298662 9298970 + 3 NA Intergenic Intergenic -26235 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 812-24 chr16 5703855 5704334 + 3 NA Intergenic Intergenic 71627 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 301-431 chr8 3579309 3579524 + 3 NA intron (NM_033225, intron 9 of 69) intron (NM_033225, intron 9 of 69) -850965 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 603-140 chr6 23662067 23662424 + 3 NA Intergenic Intergenic -463970 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 611-101 chr3 77947169 77947440 + 3 NA Intergenic Intergenic 101659 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 552-107 chr2 100765094 100765311 + 3 NA Intergenic Intergenic -54937 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 1110-19 chr9 96276156 96276794 + 3 NA intron (NM_000197, intron 2 of 10) L1MA9|LINE|L1 25701 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 531-122 chr2 156237481 156237811 + 3 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 17285 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 565-43 chr14 72863593 72863855 + 3 NA intron (NM_001280542, intron 1 of 10) L2c|LINE|L2 28925 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 636-137 chr7 70509111 70509506 + 3 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -622836 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 606-168 chr8 129628575 129628858 + 3 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 51523 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 475-143 chr2 123834655 123834953 + 3 NA Intergenic Intergenic 190370 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 505-10 chr1 96193057 96193376 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 180909 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 389-61 chr11 38435098 38435292 + 3 NA Intergenic Intergenic 211161 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 341-434 chr5 42369290 42369519 + 3 NA Intergenic Intergenic -54035 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 356-443 chr7 19030009 19030147 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR 87558 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 350-187 chr18 1816205 1816433 + 3 NA Intergenic L1MB8|LINE|L1 -456690 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 532-212 chr5 156871832 156872152 + 3 NA Intergenic L1MEd|LINE|L1 21697 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 566-86 chr2 46684830 46685071 + 3 NA Intergenic Intergenic -14010 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 554-89 chr16 79528611 79528818 + 3 NA Intergenic Intergenic 72023 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 865-21 chr2 5918958 5919455 + 3 NA Intergenic L1M4|LINE|L1 -13481 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 1137-2 chr10 79989930 79990473 + 3 NA Intergenic L1M1|LINE|L1 -41096 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 697-65 chr7 18971792 18972213 + 3 NA intron (NM_001321868, intron 24 of 25) intron (NM_001321868, intron 24 of 25) 145634 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 430-225 chr4 138616999 138617252 + 3 NA Intergenic Intergenic 307414 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 594-97 chr4 20112726 20113054 + 3 NA Intergenic AluSx1|SINE|Alu -139015 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 310-385 chr4 179017174 179017367 + 3 NA Intergenic L1ME1|LINE|L1 -1109334 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 484-238 chr6 82853383 82853602 + 3 NA Intergenic L1PA4|LINE|L1 212349 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 654-33 chr13 80593705 80593982 + 3 NA Intergenic LTR40A1|LTR|ERVL -252717 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 421-116 chr18 60204648 60204815 + 3 NA Intergenic Intergenic 168044 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 468-134 chr2 11988460 11988724 + 3 NA Intergenic Intergenic -18524 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 397-279 chr6 68125067 68125233 + 3 NA Intergenic Intergenic 69799 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 469-62 chr12 22607217 22607436 + 3 NA intron (NR_135030, intron 2 of 3) intron (NR_135030, intron 2 of 3) 17720 NR_135031 105369691 Hs.556287 NR_135030 LOC105369691 - uncharacterized LOC105369691 ncRNA 619-42 chr14 51523510 51523828 + 3 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 34541 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 503-133 chr18 63732415 63732660 + 3 NA Intergenic L1MA2|LINE|L1 -20510 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 460-105 chr17 11230466 11230655 + 3 NA Intergenic Intergenic -10653 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 488-241 chr6 117741203 117741461 + 3 NA Intergenic L1MA9|LINE|L1 65863 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 879-8 chr14 86336552 86337177 + 3 NA Intergenic Intergenic 402186 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 431-327 chrX 36777606 36777815 + 3 NA Intergenic Intergenic -230649 NM_001013736 442444 Hs.535216 NM_001013736 ENSG00000198173 FAM47C - family with sequence similarity 47 member C protein-coding 237-32 chr10 64920988 64921074 + 3 NA intron (NR_134456, intron 1 of 1) L1M1|LINE|L1 3487 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 877-10 chr17 63035282 63035646 + 3 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 69229 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 590-85 chr2 181622238 181622611 + 3 NA intron (NR_027690, intron 1 of 11) intron (NR_027690, intron 1 of 11) 34681 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 275-72 chr11 113062447 113062557 + 3 NA intron (NM_181351, intron 1 of 18) L2a|LINE|L2 -99042 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 400-346 chr8 107694060 107694259 + 3 NA Intergenic Intergenic -196241 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 338-351 chr3 120986410 120986641 + 3 NA intron (NR_145517, intron 3 of 8) L1M2|LINE|L1 -63115 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 628-74 chr2 129120838 129121166 + 3 NA Intergenic L1PB3|LINE|L1 152889 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 760-75 chr8 126593147 126593558 + 3 NA Intergenic Intergenic -34874 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 466-269 chr8 103626499 103626709 + 3 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -124694 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 942-37 chr7 45560011 45560643 + 3 NA Intergenic MIR3|SINE|MIR -13813 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 646-116 chr7 34312480 34312953 + 3 NA Intergenic L1ME4a|LINE|L1 -345502 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 686-48 chr2 133069883 133070380 + 3 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 154574 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 635-75 chr4 35604382 35604778 + 3 NA Intergenic Intergenic 639359 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 422-182 chr3 59879471 59879703 + 3 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) 201322 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 390-122 chr16 5725177 5725463 + 3 NA Intergenic AluJo|SINE|Alu 92853 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 344-22 chr1 113483196 113483403 + 3 NA intron (NM_001142782, intron 1 of 20) MLT1A0|LTR|ERVL-MaLR 92784 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 564-122 chr3 35590214 35590544 + 3 NA Intergenic L1PA5|LINE|L1 -49146 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 499-183 chr4 67785947 67786193 + 3 NA Intergenic Intergenic -29984 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 445-9 chr1 175202996 175203198 + 3 NA Intergenic Charlie4a|DNA|hAT-Charlie -10110 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 830-15 chr14 63264111 63264558 + 3 NA intron (NM_020663, intron 1 of 4) L1PA16|LINE|L1 54601 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 768-37 chr4 100500717 100501188 + 3 NA intron (NM_001159694, intron 1 of 10) L1ME3B|LINE|L1 17070 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 418-17 chr1 218514833 218515025 + 3 NA intron (NR_146760, intron 1 of 2) MamRTE1|LINE|RTE-BovB 4834 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 501-57 chr12 125723202 125723410 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR 100854 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 682-53 chr2 102216780 102217166 + 3 NA intron (NM_001351447, intron 4 of 9) L1M1|LINE|L1 29659 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 484-241 chr6 140752571 140752855 + 3 NA Intergenic L1ME3|LINE|L1 68899 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 571-11 chr10 48968184 48968544 + 3 NA intron (NM_020945, intron 55 of 61) intron (NM_020945, intron 55 of 61) 17223 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 459-212 chr4 65086780 65087021 + 3 NA Intergenic L1PA16|LINE|L1 -82400 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 776-62 chrX 78543801 78544077 + 3 NA Intergenic L1PA15|LINE|L1 115389 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 855 chr1 75388711 75389268 + 3 NA intron (NM_001320283, intron 1 of 21) L1PA17|LINE|L1 222125 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 643-59 chr2 140525346 140525791 + 3 NA intron (NM_018557, intron 49 of 90) intron (NM_018557, intron 49 of 90) 61117 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 932-26 chr6 10093056 10093483 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -311233 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 388-379 chrX 88867925 88868092 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 120783 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 717-10 chr1 181797011 181797427 + 3 NA intron (NM_001205293, intron 47 of 47) intron (NM_001205293, intron 47 of 47) 264493 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 471-3 chr1 37279794 37280036 + 3 NA Intergenic L2b|LINE|L2 118352 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 809-22 chr2 40131304 40131774 + 3 NA intron (NM_001351483, intron 8 of 8) intron (NM_001351483, intron 8 of 8) 213905 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 438-132 chr2 175986866 175987113 + 3 NA intron (NM_001305011, intron 2 of 10) L1M7|LINE|L1 15278 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 555-123 chr3 92937 93226 + 3 NA Intergenic Intergenic 81330 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 315-245 chr2 98410050 98410185 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -34470 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 315-268 chr2 230692867 230693014 + 3 NA intron (NR_040038, intron 3 of 3) intron (NR_040038, intron 3 of 3) 7589 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 534-216 chr6 59291750 59292074 + 3 NA Intergenic ALR/Alpha|Satellite|centr -1330466 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 438-280 chr8 124151503 124151679 + 3 NA intron (NR_103547, intron 1 of 4) L1MEg|LINE|L1 19931 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 968 chr1 103955390 103955949 + 3 NA Intergenic L1MC1|LINE|L1 -117354 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 632-50 chr2 53513614 53513895 + 3 NA Intergenic L2|LINE|L2 -254029 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 507-169 chr3 134083692 134083908 + 3 NA Intergenic Intergenic -26152 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 343-574 chr9 13470540 13470694 + 3 NA Intergenic L1MC5|LINE|L1 -39288 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 576-98 chr20 39146060 39146429 + 3 NA Intergenic Intergenic 78504 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 269-69 chr11 82062059 82062166 + 3 NA intron (NR_120571, intron 5 of 7) L1ME3A|LINE|L1 -171276 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 595-79 chr2 37198709 37199120 + 3 NA intron (NM_001322373, intron 2 of 5) AluJb|SINE|Alu 2418 NR_136316 100505876 Hs.666958 NM_001322373 ENSG00000218739 CEBPZOS CEBPZ-AS1 CEBPZ opposite strand protein-coding 478-49 chr11 98466044 98466300 + 3 NA Intergenic L1MCa|LINE|L1 -554777 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 496-146 chr2 162034069 162034305 + 3 NA intron (NM_001935, intron 9 of 25) intron (NM_001935, intron 9 of 25) 40028 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 399-272 chr6 137135010 137135299 + 3 NA Intergenic L1MA9|LINE|L1 38490 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 476-16 chr1 223545168 223545364 + 3 NA exon (NM_001143962, exon 17 of 21) exon (NM_001143962, exon 17 of 21) 120435 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 405-61 chr12 56590961 56591134 + 3 NA 3' UTR (NM_002898, exon 14 of 14) 3' UTR (NM_002898, exon 14 of 14) 39279 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 351-71 chr11 63355755 63355929 + 3 NA Intergenic L1PA12|LINE|L1 -13943 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 605-73 chr3 34029942 34030377 + 3 NA Intergenic Intergenic 231529 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 541-89 chr17 56225121 56225417 + 3 NA intron (NM_001370326, intron 2 of 20) MIR|SINE|MIR 71794 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 567-142 chr5 4163982 4164245 + 3 NA Intergenic MamGypLTR3|LTR|Gypsy 568281 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 723-7 chr1 166806115 166806442 + 3 NA Intergenic L1MEg2|LINE|L1 -33197 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 1068-5 chr12 129705878 129706323 + 3 NA intron (NM_133448, intron 1 of 8) L1ME4a|LINE|L1 197925 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 824-2 chr10 44115919 44116293 + 3 NA Intergenic MER3|DNA|hAT-Charlie -176644 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 1114-6 chr6 99038939 99039591 + 3 NA Intergenic Intergenic -85344 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 194-165 chr5 56151839 56151924 + 3 NA intron (NM_024669, intron 6 of 11) (TA)n|Simple_repeat|Simple_repeat 81449 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 828-37 chr5 20113010 20113324 + 3 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -124967 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 670-36 chr14 80677575 80677932 + 3 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 263985 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 818-46 chr4 131280134 131280542 + 3 NA Intergenic L1ME3A|LINE|L1 -484500 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 778-20 chr12 72943444 72943948 + 3 NA Intergenic Intergenic -215494 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 582-76 chr2 128927343 128927698 + 3 NA Intergenic L1MC3|LINE|L1 62920 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 475-177 chr3 39198658 39198954 + 3 NA Intergenic MSTC|LTR|ERVL-MaLR -6211 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 423-312 chr9 85181605 85181846 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 475824 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 375-374 chr7 40935889 40936076 + 3 NA Intergenic L1MB7|LINE|L1 43957 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 925-15 chr19 51915615 51916124 + 3 NA Intergenic Intergenic -10852 NM_023074 65251 Hs.148322 NM_023074 ENSG00000198093 ZNF649 - zinc finger protein 649 protein-coding 444-237 chr7 30189055 30189394 + 3 NA Intergenic Intergenic 54238 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 640-35 chr14 69246780 69247109 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -13214 NM_001168368 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 330-251 chr2 29826819 29826956 + 3 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 94699 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 624-86 chr4 33331640 33332003 + 3 NA Intergenic L1PA15-16|LINE|L1 708072 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 512-120 chr2 75107696 75108006 + 3 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) 17039 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 274-371 chr8 20536762 20536970 + 3 NA Intergenic Intergenic 78060 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 653-45 chr15 36046276 36046665 + 3 NA Intergenic Intergenic 119614 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 509-35 chr11 13080285 13080569 + 3 NA Intergenic MER5B|DNA|hAT-Charlie 71111 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 568-169 chr6 14170842 14171232 + 3 NA Intergenic L1MB7|LINE|L1 53265 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 467-254 chr6 163387433 163387763 + 3 NA Intergenic Intergenic 26352 NR_037593 100526820 Hs.644159 NR_037593 ENSG00000270419 CAHM LINC00468 colon adenocarcinoma hypermethylated ncRNA 582-115 chr4 168081712 168082040 + 3 NA Intergenic Charlie2b|DNA|hAT-Charlie -10661 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 927-4 chr14 35605793 35606239 + 3 NA intron (NM_014990, intron 34 of 40) intron (NM_014990, intron 34 of 40) 71852 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 598-123 chr6 135728321 135728750 + 3 NA Intergenic Intergenic -123166 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 173-36 chr14 72066250 72066344 + 3 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 132770 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 490-276 chr7 118484011 118484188 + 3 NA Intergenic Intergenic 259395 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 482-63 chr12 20930213 20930449 + 3 NA intron (NM_001371097, intron 13 of 15) intron (NM_001371097, intron 13 of 15) -85365 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 326-140 chr13 96268600 96268754 + 3 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) -158552 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 349-368 chr4 49094880 49095056 + 3 NA Intergenic (CATTC)n|Satellite|Satellite 108326 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 481-65 chr12 15457826 15458003 + 3 NA intron (NM_030667, intron 1 of 26) L1MB1|LINE|L1 -88697 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 700-61 chr3 84675045 84675447 + 3 NA intron (NR_033860, intron 16 of 20) LTR52-int|LTR|ERVL 194329 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 680-34 chr14 20097857 20098378 + 3 NA Intergenic Intergenic -19351 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 519-188 chr5 175624425 175624649 + 3 NA Intergenic Intergenic -33534 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 541-25 chr10 122283292 122283503 + 3 NA intron (NM_001318189, intron 3 of 15) L2c|LINE|L2 12101 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 685-15 chr11 69328308 69328618 + 3 NA Intergenic Intergenic 34308 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 499-45 chr11 87476451 87476638 + 3 NA Intergenic MIR|SINE|MIR 242867 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 348-177 chr16 81502069 81502313 + 3 NA intron (NM_030629, intron 1 of 20) MIR|SINE|MIR 6837 NM_030629 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 423-179 chr3 94505332 94505510 + 3 NA Intergenic Intergenic -432842 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 381-4 chr1 40359572 40359711 + 3 NA Intergenic L1MA3|LINE|L1 -14086 NM_022733 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 613-149 chr9 113045938 113046213 + 3 NA intron (NM_003408, intron 3 of 3) intron (NM_003408, intron 3 of 3) 10649 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 1710 chr7 81653056 81654126 + 3 NA intron (NR_126025, intron 1 of 10) intron (NR_126025, intron 1 of 10) -27375 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 544-137 chr20 42018454 42018757 + 3 NA Intergenic Intergenic -400228 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 451-93 chr17 69625300 69625642 + 3 NA intron (NR_109972, intron 3 of 4) MLT1F2|LTR|ERVL-MaLR 31484 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 650-19 chr12 28722322 28722693 + 3 NA Intergenic MIRb|SINE|MIR -426771 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 363-153 chr15 38766625 38766809 + 3 NA Intergenic Intergenic 70119 NR_160786 801-33 chr3 18220983 18221499 + 3 NA intron (NR_161333, intron 4 of 4) Charlie4a|DNA|hAT-Charlie 204098 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 529-202 chr7 17142859 17143149 + 3 NA Intergenic Intergenic -155648 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 595-62 chr16 82823557 82823910 + 3 NA non-coding (NR_110938, exon 2 of 3) non-coding (NR_110938, exon 2 of 3) 50414 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 456-320 chr8 106109676 106109906 + 3 NA Intergenic LTR49-int|LTR|ERV1 -49288 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 499-208 chr5 91614577 91614909 + 3 NA Intergenic Intergenic -231426 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 545-219 chr7 10320428 10320686 + 3 NA Intergenic Intergenic -382119 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 356-6 chr1 40475003 40475207 + 3 NA Intergenic Intergenic -2185 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 699-24 chr13 25515601 25516018 + 3 NA intron (NM_016529, intron 2 of 36) intron (NM_016529, intron 2 of 36) 47035 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 581-100 chr3 98397879 98398281 + 3 NA Intergenic L1PBb|LINE|L1 7414 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 526-148 chr2 222327605 222327830 + 3 NA intron (NR_136642, intron 1 of 3) Tigger2a|DNA|TcMar-Tigger 7056 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 525-238 chr7 49875919 49876108 + 3 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 100680 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 852-44 chr7 40658503 40659087 + 3 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 321144 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 577-195 chr8 126770918 126771302 + 3 NA Intergenic AluJo|SINE|Alu -212632 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 1272-5 chr3 139031346 139032042 + 3 NA Intergenic L1M3|LINE|L1 -10768 NM_001013650 389151 Hs.531376 NM_001013650 ENSG00000184814 PRR23B - proline rich 23B protein-coding 387-354 chr8 30061652 30061838 + 3 NA Intergenic Intergenic 21319 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 573-64 chr14 65280499 65280861 + 3 NA Intergenic Intergenic 54503 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 653-121 chr8 91692307 91692739 + 3 NA Intergenic Intergenic 325157 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 475-152 chr2 180055095 180055295 + 3 NA Intergenic L1MA9|LINE|L1 -47898 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 450-53 chr11 106828388 106828633 + 3 NA intron (NM_001256424, intron 4 of 8) L1P4|LINE|L1 189966 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 947-26 chr7 105951781 105952180 + 3 NA Intergenic L1MEd|LINE|L1 -11284 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 384-148 chr18 43948041 43948214 + 3 NA Intergenic Intergenic 583570 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 276-212 chr2 5278625 5278808 + 3 NA Intergenic L1MEd|LINE|L1 412402 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 387-228 chr3 95972058 95972204 + 3 NA Intergenic Intergenic -288938 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 474-166 chr20 19412781 19413003 + 3 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -128296 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 305-258 chr2 72934231 72934441 + 3 NA 3' UTR (NM_004097, exon 3 of 3) 3' UTR (NM_004097, exon 3 of 3) 16817 NM_004097 2016 Hs.516090 NM_004097 ENSG00000135638 EMX1 - empty spiracles homeobox 1 protein-coding 559-72 chr17 52859861 52860166 + 3 NA Intergenic Intergenic -2108 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 1072-14 chr22 34720208 34720857 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 277384 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 349-530 chrX 85351289 85351424 + 3 NA exon (NM_024921, exon 5 of 17) exon (NM_024921, exon 5 of 17) 28309 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 756-23 chr2 17338335 17338724 + 3 NA Intergenic MER103C|DNA|hAT-Charlie 179911 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 475-125 chr2 34003883 34004086 + 3 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -63242 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 374-239 chr3 19511723 19511930 + 3 NA intron (NM_144633, intron 12 of 15) intron (NM_144633, intron 12 of 15) -196895 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 584-14 chr1 213565353 213565716 + 3 NA Intergenic L1ME2z|LINE|L1 -359215 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 250-66 chr11 58168061 58168239 + 3 NA intron (NM_001005212, intron 2 of 2) L1ME3Cz|LINE|L1 -22284 NM_001005283 219957 Hs.553643 NM_001005283 ENSG00000186513 OR9Q2 OR9Q2P olfactory receptor family 9 subfamily Q member 2 protein-coding 512-95 chr16 35701528 35701854 + 3 NA Intergenic ALR/Alpha|Satellite|centr -44861 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 310-10 chr1 100778775 100778948 + 3 NA Intergenic L2a|LINE|L2 59119 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 656-57 chr2 71805164 71805681 + 3 NA Intergenic Intergenic 338723 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 518-252 chr6 15973053 15973263 + 3 NA Intergenic MLT2B4|LTR|ERVL -155928 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 1018-10 chr14 65450000 65450702 + 3 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) -20751 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 197-157 chr4 130161660 130161757 + 3 NA Intergenic Intergenic -214653 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 303-364 chr5 91641890 91642048 + 3 NA Intergenic Intergenic -258652 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 618-74 chr20 55218804 55219080 + 3 NA Intergenic L1MC3|LINE|L1 -204101 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 143-76 chr7 42573437 42573514 + 3 NA Intergenic Intergenic 132972 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 640-139 chr8 127012589 127012938 + 3 NA promoter-TSS (NR_045262) promoter-TSS (NR_045262) -391 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 848 chr1 31211503 31212066 + 3 NA intron (NM_024522, intron 1 of 6) AluSx3|SINE|Alu 28103 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 874-9 chr17 59541037 59541441 + 3 NA Intergenic Intergenic -14382 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 705-3 chr1 192681939 192682348 + 3 NA Intergenic Intergenic -34185 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 605-43 chr18 77326081 77326407 + 3 NA Intergenic L1MA9|LINE|L1 76396 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 386-350 chr8 85083774 85083977 + 3 NA Intergenic Intergenic -23363 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 516-197 chr4 91394615 91394953 + 3 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 882518 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 560-59 chr15 91812063 91812274 + 3 NA Intergenic AluSc|SINE|Alu -41540 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 372-314 chr3 8822246 8822390 + 3 NA Intergenic Intergenic -52704 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 333-396 chr4 65991823 65991995 + 3 NA Intergenic L1MC5a|LINE|L1 -284915 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 487-86 chr14 61121078 61121323 + 3 NA Intergenic LTR2|LTR|ERV1 -139510 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 1005-2 chr10 74817111 74817907 + 3 NA Intergenic Intergenic -7746 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 871-44 chrX 58393486 58393849 + 3 NA Intergenic ALR/Alpha|Satellite|centr -483034 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 688-18 chr11 12063730 12064194 + 3 NA Intergenic L1ME1|LINE|L1 33087 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 695-76 chr5 13423386 13423887 + 3 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -390750 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 596-55 chr13 90903961 90904282 + 3 NA intron (NR_027039, intron 2 of 5) intron (NR_027039, intron 2 of 5) 22476 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 366-15 chr1 99571473 99571734 + 3 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -74510 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 664-94 chr6 37715513 37715966 + 3 NA Intergenic MER115|DNA|hAT-Tip100 -17856 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 472-216 chr3 172228347 172228565 + 3 NA intron (NM_001135095, intron 4 of 25) intron (NM_001135095, intron 4 of 25) 187925 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 398-8 chr1 88282747 88282914 + 3 NA Intergenic Intergenic -401314 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 361-291 chr3 97341572 97341776 + 3 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -97933 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 516-10 chr1 172348338 172348619 + 3 NA intron (NM_015569, intron 17 of 20) MIRb|SINE|MIR -72207 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 643-118 chr7 90086973 90087230 + 3 NA intron (NR_110029, intron 2 of 2) L1PA16|LINE|L1 -32299 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 624-112 chr6 101979056 101979389 + 3 NA intron (NM_001166247, intron 13 of 16) L2|LINE|L2 580237 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 373-445 chrX 136089146 136089314 + 3 NA Intergenic L1MDa|LINE|L1 -57472 NR_027621 2273 Hs.435369 NM_001449 ENSG00000022267 FHL1 FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA four and a half LIM domains 1 protein-coding 545-260 chrX 89146536 89146781 + 3 NA Intergenic Intergenic 399433 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 480-32 chr10 60691429 60691597 + 3 NA intron (NM_001204403, intron 1 of 43) MIRb|SINE|MIR 42015 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 449-187 chr4 61114322 61114511 + 3 NA Intergenic Intergenic -29240 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 589-78 chr2 239850426 239850726 + 3 NA Intergenic L1MA6|LINE|L1 87716 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 412-292 chr6 157960320 157960504 + 3 NA Intergenic L1MEc|LINE|L1 -21451 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 239-275 chr4 41208796 41208908 + 3 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 5690 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 831-15 chr16 73928619 73929102 + 3 NA Intergenic Intergenic 286661 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 1016-11 chr2 134644590 134645244 + 3 NA intron (NM_030923, intron 2 of 7) L1ME1|LINE|L1 74083 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 402-185 chr20 31300673 31300954 + 3 NA Intergenic Intergenic 7772 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 344-374 chr5 9567602 9567849 + 3 NA Intergenic Intergenic 18898 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 466-197 chr5 23576172 23576374 + 3 NA Intergenic Intergenic 68618 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 344-63 chr10 105903377 105903528 + 3 NA Intergenic MIRb|SINE|MIR -83119 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 330-55 chr10 29339136 29339261 + 3 NA Intergenic Intergenic 50128 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 431-112 chr19 21817571 21817850 + 3 NA intron (NM_001256649, intron 6 of 6) intron (NM_001256649, intron 6 of 6) 18472 NM_003423 7594 Hs.534365 NM_003423 ENSG00000198521 ZNF43 HTF6|KOX27|ZNF39L1 zinc finger protein 43 protein-coding 614-108 chr6 70922771 70923092 + 3 NA intron (NM_080742, intron 1 of 3) MIR|SINE|MIR 34129 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 465-11 chr1 114513921 114514125 + 3 NA Intergenic Charlie22a|DNA|hAT-Charlie -2820 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 196-168 chr3 43529497 43529603 + 3 NA intron (NM_001346464, intron 12 of 13) L1MC4|LINE|L1 92376 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 733-68 chr5 169237815 169238263 + 3 NA intron (NM_003062, intron 3 of 35) L1MC3|LINE|L1 25655 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 1029-2 chr12 3865212 3865731 + 3 NA intron (NM_001286522, intron 1 of 7) L1MEc|LINE|L1 7928 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 549-221 chr9 82572597 82572878 + 3 NA Intergenic Intergenic 490405 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 443-187 chr20 55586270 55586446 + 3 NA Intergenic Intergenic -159161 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 456-298 chr7 36819882 36820106 + 3 NA Intergenic Intergenic -95445 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 1218-9 chr9 112999001 112999610 + 3 NA intron (NM_001101338, intron 4 of 4) intron (NM_001101338, intron 4 of 4) 12887 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 692-90 chr7 36620706 36621041 + 3 NA intron (NM_001177507, intron 7 of 19) intron (NM_001177507, intron 7 of 19) -20753 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 504-193 chr4 91955538 91955721 + 3 NA Intergenic L1PA16|LINE|L1 321673 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 245-228 chr3 55257208 55257308 + 3 NA Intergenic Intergenic 79086 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 477-108 chr16 49335201 49335380 + 3 NA Intergenic MIRc|SINE|MIR -38514 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 709-60 chr3 120258878 120259229 + 3 NA Intergenic L2a|LINE|L2 -14758 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 665-76 chr5 52916514 52916847 + 3 NA intron (NM_181501, intron 15 of 28) intron (NM_181501, intron 15 of 28) -72672 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 636-88 chr21 46104670 46104998 + 3 NA intron (NM_058174, intron 1 of 27) L1M4c|LINE|L1 6715 NM_058175 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 356-373 chr4 132475364 132475564 + 3 NA Intergenic Intergenic -115625 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 910-2 chr1 106544232 106544789 + 3 NA Intergenic Intergenic -273729 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 410-46 chr11 27209103 27209302 + 3 NA intron (NR_125767, intron 2 of 4) MLT1L|LTR|ERVL-MaLR 9566 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 756-12 chr13 53686040 53686510 + 3 NA Intergenic Intergenic -129144 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 602-40 chr15 71172573 71172844 + 3 NA intron (NR_120349, intron 1 of 1) (TA)n|Simple_repeat|Simple_repeat 16351 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 917-28 chr8 133701314 133701847 + 3 NA Intergenic Intergenic -17514 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 628-93 chr4 31228911 31229189 + 3 NA Intergenic MIR|SINE|MIR 57906 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 436-288 chr7 89180593 89180801 + 3 NA intron (NM_181646, intron 1 of 3) L1MA3|LINE|L1 -384960 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 478-112 chr17 3500271 3500467 + 3 NA TTS (NM_001128085) TTS (NM_001128085) 13483 NM_001321336 84690 Hs.351068 NM_032598 ENSG00000141255 SPATA22 NYD-SP20|NYDSP20 spermatogenesis associated 22 protein-coding 652-55 chr17 54048445 54048717 + 3 NA Intergenic Tigger5b|DNA|TcMar-Tigger 225654 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 590-48 chr14 62032440 62032759 + 3 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -84758 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 545-80 chr15 72878177 72878413 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -94537 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 478-26 chr10 67072962 67073226 + 3 NA intron (NR_111909, intron 2 of 2) L1MEg|LINE|L1 60828 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 370-283 chr21 28390485 28390686 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -148733 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 185-163 chr5 54854015 54854130 + 3 NA Intergenic MER58D|DNA|hAT-Charlie -109814 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 654-2 chr1 25634875 25635296 + 3 NA intron (NM_020379, intron 1 of 11) FLAM_A|SINE|Alu 17617 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 495-6 chr1 115533433 115533725 + 3 NA Intergenic Intergenic -108391 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 686-32 chr19 12274844 12275184 + 3 NA exon (NM_001164276, exon 4 of 5) exon (NM_001164276, exon 4 of 5) 19598 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 291-477 chr8 136875268 136875394 + 3 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 344533 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 386-287 chr5 37071544 37071722 + 3 NA Intergenic L2|LINE|L2 -177413 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 651-37 chr14 51433136 51433548 + 3 NA Intergenic L1MC4a|LINE|L1 -36207 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 472-340 chr9 20081994 20082298 + 3 NA Intergenic Intergenic -295127 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 907-5 chr10 76395589 76396042 + 3 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -492229 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 400-184 chr2 187746055 187746251 + 3 NA Intergenic Intergenic -191648 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 974-11 chr20 48173593 48174217 + 3 NA Intergenic L2b|LINE|L2 -183788 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 474-251 chr6 48564592 48564761 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -495987 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 877-18 chr3 89273361 89273853 + 3 NA intron (NM_182644, intron 3 of 6) Tigger17a|DNA|TcMar-Tigger 165986 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 393-207 chr22 33560559 33560784 + 3 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -124002 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 400-321 chr7 44094803 44094992 + 3 NA Intergenic L1MC5|LINE|L1 -9448 NM_001129 165 Hs.439463 NM_001129 ENSG00000106624 AEBP1 ACLP AE binding protein 1 protein-coding 478-48 chr11 86815876 86816106 + 3 NA intron (NR_120591, intron 1 of 4) intron (NR_120591, intron 1 of 4) 15449 NR_120593 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 337-490 chr6 67803227 67803369 + 3 NA Intergenic L1MA3|LINE|L1 -252053 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 590-181 chrX 58010843 58011201 + 3 NA Intergenic L1PB1|LINE|L1 -100389 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 1455-7 chr7 6682011 6682670 + 3 NA Intergenic Intergenic 24607 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 470-241 chr6 124401213 124401424 + 3 NA intron (NM_153355, intron 3 of 5) L1ME3B|LINE|L1 118313 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 504-130 chr2 102943776 102943949 + 3 NA Intergenic Intergenic 40567 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 745 chr1 208722453 208722906 + 3 NA Intergenic L1MCc|LINE|L1 -6009 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 673-117 chr8 46075039 46075377 + 3 NA Intergenic AluSq4|SINE|Alu 542435 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 853-8 chr14 66605145 66605668 + 3 NA intron (NM_001024218, intron 1 of 21) L1PA16|LINE|L1 97999 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 531-256 chr8 138052538 138052817 + 3 NA intron (NR_161374, intron 1 of 7) AluSx1|SINE|Alu 30868 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 580-126 chr3 189746304 189746623 + 3 NA intron (NM_003722, intron 3 of 13) L1MA4A|LINE|L1 -43196 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 332-542 chr8 118416925 118417114 + 3 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -203982 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 528-194 chr5 6294919 6295230 + 3 NA Intergenic L1MC3|LINE|L1 42218 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 863-11 chr14 77171535 77171924 + 3 NA Intergenic Intergenic -10069 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 414-254 chr4 184681369 184681520 + 3 NA intron (NR_144313, intron 8 of 12) MER2|DNA|TcMar-Tigger 31706 NM_001345898 201973 Hs.481307 NM_152683 ENSG00000164306 PRIMPOL CCDC111|MYP22|Primpol1 primase and DNA directed polymerase protein-coding 321-594 chr9 29441917 29442095 + 3 NA Intergenic LTR16B2|LTR|ERVL -228405 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 809-49 chr7 44774090 44774471 + 3 NA Intergenic MER2|DNA|TcMar-Tigger 18092 NM_174929 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 438-214 chr5 29866382 29866559 + 3 NA Intergenic L1MA8|LINE|L1 -14090 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 498-135 chr2 148086923 148087139 + 3 NA intron (NM_018328, intron 2 of 14) L1PB1|LINE|L1 -65427 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 479-205 chr5 155265514 155265683 + 3 NA Intergenic Intergenic 251843 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 666-10 chr10 104949875 104950202 + 3 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -283822 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 462-54 chr11 114902976 114903332 + 3 NA Intergenic L1MA3|LINE|L1 224627 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 463-237 chr5 91719172 91719365 + 3 NA Intergenic Intergenic -335951 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 979-17 chr5 42130320 42130847 + 3 NA Intergenic AluSx3|SINE|Alu 44762 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 393-167 chr2 95359346 95359518 + 3 NA intron (NM_001034914, intron 1 of 7) MSTD-int|LTR|ERVL-MaLR 12774 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 582-66 chr2 31555693 31556032 + 3 NA intron (NM_000348, intron 1 of 4) FLAM_A|SINE|Alu 25076 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 554-132 chr20 20348754 20349102 + 3 NA intron (NM_015585, intron 26 of 26) L1MA8|LINE|L1 -19176 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 460-16 chr1 189572642 189572879 + 3 NA Intergenic Intergenic 903250 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 476-42 chr10 131475838 131476115 + 3 NA Intergenic Intergenic -164255 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 800-49 chr5 13437280 13437663 + 3 NA Intergenic AluSg|SINE|Alu -404585 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 211-174 chr22 33159930 33160038 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X 51455 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 553-179 chr4 100818324 100818667 + 3 NA Intergenic Intergenic -143382 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 489-44 chr11 84697662 84698059 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 23082 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 150-35 chr14 51299601 51299694 + 3 NA Intergenic Intergenic 28738 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 372-224 chr2 53252628 53252917 + 3 NA Intergenic Intergenic -515011 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 674-30 chr14 79877361 79877717 + 3 NA Intergenic AluSx1|SINE|Alu -333880 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 437-200 chr4 151874176 151874445 + 3 NA Intergenic Intergenic -113287 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 401-336 chr8 140411874 140412031 + 3 NA intron (NM_001321646, intron 4 of 21) L1MC4|LINE|L1 45792 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 851-15 chr17 71930036 71930623 + 3 NA Intergenic Intergenic 95650 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 773-46 chr8 51082495 51082999 + 3 NA Intergenic MIR|SINE|MIR 726698 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 534-51 chr11 103539747 103539981 + 3 NA Intergenic Intergenic -310042 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 526-256 chr8 142065752 142066064 + 3 NA Intergenic Intergenic -110431 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 710-20 chr11 74870788 74871217 + 3 NA intron (NM_001270381, intron 8 of 15) HUERS-P3-int|LTR|ERV1 78089 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 522-227 chr6 139209300 139209644 + 3 NA Intergenic L1PB2|LINE|L1 74392 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 312-159 chr15 46419481 46419651 + 3 NA Intergenic Intergenic 714371 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 414-60 chr12 9009449 9009625 + 3 NA non-coding (NR_137428, exon 4 of 4) non-coding (NR_137428, exon 4 of 4) 19912 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 302-81 chr11 82462426 82462546 + 3 NA Intergenic L2c|LINE|L2 -58573 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 339-97 chr11 57120532 57120699 + 3 NA Intergenic MLT1L|LTR|ERVL-MaLR -61338 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 1010-3 chr13 109996290 109996820 + 3 NA Intergenic Charlie3|DNA|hAT-Charlie -56730 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 767-50 chr7 30996553 30997095 + 3 NA Intergenic Intergenic 32871 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 1077-3 chr11 111420151 111420755 + 3 NA Intergenic Intergenic -2267 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 582-144 chr7 49610599 49610921 + 3 NA Intergenic L1MC3|LINE|L1 -162878 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 196-192 chr4 126806743 126806864 + 3 NA Intergenic Intergenic -826154 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 1078-13 chr5 45921155 45921613 + 3 NA Intergenic ALR/Alpha|Satellite|centr -225004 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 627-64 chr21 22962958 22963294 + 3 NA Intergenic Intergenic -116158 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 223-57 chr11 108867809 108867955 + 3 NA intron (NM_004398, intron 16 of 17) Tigger15a|DNA|TcMar-Tigger 202813 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 535-137 chr2 140789299 140789572 + 3 NA intron (NM_018557, intron 32 of 90) L2a|LINE|L2 -202750 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 438-78 chr15 47606309 47606518 + 3 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -111092 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 652-82 chr3 179641550 179641917 + 3 NA Intergenic Intergenic -11307 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 625-70 chr3 137311739 137312134 + 3 NA Intergenic L1ME4b|LINE|L1 353953 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 777-10 chr10 97946857 97947411 + 3 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) -71237 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 501-101 chr2 65644171 65644420 + 3 NA Intergenic Intergenic -211696 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 393-279 chr5 86451767 86451966 + 3 NA Intergenic Intergenic -166075 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 450-63 chr12 33238513 33238717 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR 201204 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 500-292 chr8 68230854 68231085 + 3 NA intron (NM_024870, intron 39 of 39) intron (NM_024870, intron 39 of 39) -99404 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 748-12 chr1 242720334 242720858 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR -195899 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 621-70 chr22 27002231 27002699 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 58053 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 487-169 chr21 29910854 29911110 + 3 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 29014 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 444-292 chrX 77278483 77278643 + 3 NA Intergenic L1PA16|LINE|L1 -168826 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 573-50 chr12 33540765 33541031 + 3 NA Intergenic Intergenic -101079 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 642-109 chr8 122678604 122679053 + 3 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 15278 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 450-304 chr8 107134827 107135093 + 3 NA Intergenic Intergenic 201555 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 409-227 chr4 118015547 118015728 + 3 NA Intergenic Intergenic -17685 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 445-11 chr1 199143496 199143712 + 3 NA Intergenic Intergenic -4994 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 897-36 chr7 141481579 141481991 + 3 NA Intergenic Intergenic -69625 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 377-18 chr1 115177820 115177994 + 3 NA Intergenic AluJr|SINE|Alu -88404 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 296-378 chr5 99850264 99850485 + 3 NA Intergenic L1MA10|LINE|L1 316384 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 535-75 chr14 65718263 65718547 + 3 NA intron (NR_038167, intron 7 of 8) L1M1|LINE|L1 247303 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 367-34 chr1 209091254 209091476 + 3 NA Intergenic L1ME1|LINE|L1 118911 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 392-154 chr2 115906456 115906713 + 3 NA Intergenic Intergenic 562769 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 624-38 chr15 37529295 37529704 + 3 NA Intergenic MLT1A|LTR|ERVL-MaLR -405108 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 580-16 chr10 54778474 54778803 + 3 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 22593 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 331-126 chr12 109682731 109682964 + 3 NA Intergenic AluJb|SINE|Alu -30978 NM_032829 84915 Hs.661785 NM_032829 ENSG00000139438 FAM222A C12orf34 family with sequence similarity 222 member A protein-coding 542-127 chr3 53997870 53998088 + 3 NA Intergenic Intergenic -106120 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 712-21 chr12 3527129 3527469 + 3 NA intron (NM_019854, intron 1 of 9) MER44B|DNA|TcMar-Tigger -34480 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 462-216 chr4 161235012 161235225 + 3 NA Intergenic Intergenic -787615 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 422-62 chr12 61198272 61198451 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR 994478 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 360-39 chr10 59526514 59526708 + 3 NA Intergenic L2a|LINE|L2 -163430 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 196-275 chr9 112166122 112166197 + 3 NA intron (NM_022486, intron 1 of 16) intron (NM_022486, intron 1 of 16) 9138 NM_001282643 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 478-199 chr3 150516839 150517126 + 3 NA Intergenic L1MB8|LINE|L1 29514 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 296-365 chr5 37938538 37938682 + 3 NA Intergenic L3|LINE|CR1 -9881 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 1115-10 chr3 87443113 87443670 + 3 NA Intergenic Intergenic -166807 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 571-46 chr14 51541133 51541453 + 3 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 52165 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 709-37 chr2 33864124 33864611 + 3 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -136150 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 259-404 chr8 101574750 101574921 + 3 NA intron (NM_024915, intron 6 of 15) MIR|SINE|MIR 82396 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 471-106 chr17 61649874 61650035 + 3 NA Intergenic L1MC5|LINE|L1 -58735 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 428-176 chr3 60999711 60999968 + 3 NA intron (NR_148922, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR 251613 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 599-19 chr10 123736128 123736469 + 3 NA Intergenic MER92-int|LTR|ERV1 69943 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 543-71 chr13 105574062 105574316 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR -68508 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 903-4 chr10 121637789 121638267 + 3 NA Intergenic AluSz|SINE|Alu -39570 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 661-76 chr4 161146772 161147166 + 3 NA Intergenic Intergenic -875764 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 578-3 chr1 47528356 47528583 + 3 NA Intergenic MIRc|SINE|MIR -91152 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 399-113 chr17 16544972 16545151 + 3 NA Intergenic HUERS-P3b-int|LTR|ERV1 24143 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 357-260 chr3 20091560 20091822 + 3 NA intron (NM_003884, intron 2 of 17) L1MA5|LINE|L1 -45874 NR_036086 100422901 NR_036086 ENSG00000266745 MIR3135A MIR3135|hsa-mir-3135a microRNA 3135a ncRNA 645-66 chr2 224408902 224409200 + 3 NA Intergenic L1MA4|LINE|L1 -6944 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 483-259 chr8 63822911 63823178 + 3 NA Intergenic Intergenic 53614 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 812-52 chr8 88139511 88139860 + 3 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 187798 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 864-29 chr4 121051584 121052167 + 3 NA intron (NM_024574, intron 1 of 3) intron (NM_024574, intron 1 of 3) 20660 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 502-148 chr2 138297741 138297933 + 3 NA Intergenic Intergenic 195953 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 507-265 chr8 134165459 134165696 + 3 NA Intergenic AluSz6|SINE|Alu 279081 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 942-25 chr3 112057250 112057745 + 3 NA intron (NR_026734, intron 9 of 16) intron (NR_026734, intron 9 of 16) 14519 NM_001366279 344805 Hs.435490 NM_001042575 ENSG00000176040 TMPRSS7 - transmembrane serine protease 7 protein-coding 486-216 chr3 187326982 187327316 + 3 NA Intergenic L3|LINE|CR1 -35127 NM_001031849 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 516-68 chr14 42665828 42666152 + 3 NA Intergenic Intergenic 1059134 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 334-113 chr12 75437097 75437254 + 3 NA Intergenic L1PA15-16|LINE|L1 -43580 NM_006851 11010 Hs.205558 NM_006851 ENSG00000139278 GLIPR1 CRISP7|GLIPR|RTVP1 GLI pathogenesis related 1 protein-coding 362-391 chr6 155655639 155655889 + 3 NA Intergenic Intergenic 140920 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 918-22 chr5 86902297 86902716 + 3 NA Intergenic L2|LINE|L2 155688 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 211-203 chr4 258835 258909 + 3 NA Intergenic MIR|SINE|MIR 46272 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 497-33 chr11 2093063 2093251 + 3 NA Intergenic Intergenic 41052 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 427-78 chr15 24905201 24905343 + 3 NA intron (NM_001349456, intron 2 of 12) AluSx4|SINE|Alu 48760 NM_001349462 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 454-201 chr3 38809434 38809649 + 3 NA Intergenic Intergenic -15531 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 272-474 chr9 68777797 68777966 + 3 NA intron (NM_003558, intron 2 of 15) intron (NM_003558, intron 2 of 15) -2184 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 515-147 chr21 24184334 24184598 + 3 NA Intergenic Intergenic 136911 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 499-232 chr6 151608246 151608477 + 3 NA intron (NM_025059, intron 9 of 10) L1M2|LINE|L1 -82135 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 352-257 chr2 174285983 174286170 + 3 NA Intergenic L1M4|LINE|L1 -37544 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 471-29 chr10 61908062 61908240 + 3 NA intron (NM_032199, intron 2 of 9) intron (NM_032199, intron 2 of 9) 6452 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 250-201 chr2 52200231 52200338 + 3 NA intron (NR_135237, intron 7 of 10) L1MA4A|LINE|L1 -170364 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 754-12 chr11 113420862 113421241 + 3 NA intron (NM_016574, intron 2 of 6) MIRb|SINE|MIR 29037 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 456-237 chr4 153688166 153688341 + 3 NA intron (NM_003264, intron 2 of 2) intron (NM_003264, intron 2 of 2) 3973 NM_001318787 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 390-221 chr22 28090110 28090320 + 3 NA intron (NM_001145418, intron 12 of 22) L1ME4a|LINE|L1 -169603 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 535-202 chr5 87066572 87066773 + 3 NA Intergenic L1ME3G|LINE|L1 48282 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 705-104 chr8 101312574 101312898 + 3 NA Intergenic MER58A|DNA|hAT-Charlie -56157 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 890-9 chr12 27918180 27918613 + 3 NA Intergenic Intergenic 51580 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 327-24 chr1 208865681 208865911 + 3 NA Intergenic Intergenic -106658 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 500-299 chr8 91536526 91536839 + 3 NA Intergenic L1MA7|LINE|L1 287363 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 532-267 chr8 59539452 59539729 + 3 NA Intergenic Intergenic 420380 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 326-251 chr2 98670424 98670561 + 3 NA intron (NM_012214, intron 4 of 15) intron (NM_012214, intron 4 of 15) -7019 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 520-147 chr2 81846851 81847081 + 3 NA Intergenic MER57B2|LTR|ERV1 -380020 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 511-43 chr12 22942340 22942588 + 3 NA Intergenic L1M3a|LINE|L1 -233172 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 827-49 chr6 53209466 53209879 + 3 NA Intergenic AluJb|SINE|Alu -60831 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 768-8 chr10 71175301 71175643 + 3 NA Intergenic Intergenic -37098 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 517-141 chr2 129734747 129734969 + 3 NA Intergenic Intergenic 142633 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 457-159 chr3 85098624 85098850 + 3 NA intron (NM_001167674, intron 1 of 9) MER8|DNA|TcMar-Tigger -36473 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 347-293 chr3 5346338 5346529 + 3 NA Intergenic Intergenic -96178 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 306-101 chr12 25743349 25743559 + 3 NA Intergenic Intergenic -94876 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 709-18 chr12 14307934 14308297 + 3 NA Intergenic MLT1C|LTR|ERVL-MaLR -57517 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 724-29 chr19 43871845 43872135 + 3 NA TTS (NM_001033719) TTS (NM_001033719) 8146 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 684-94 chr5 38113352 38113673 + 3 NA intron (NR_147009, intron 2 of 2) L2c|LINE|L2 -34968 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 490-216 chr5 54144874 54145277 + 3 NA intron (NM_019087, intron 3 of 4) intron (NM_019087, intron 3 of 4) 165498 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 483-36 chr11 31622559 31622908 + 3 NA intron (NM_001288725, intron 5 of 10) intron (NM_001288725, intron 5 of 10) 112966 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 500-130 chr2 63253276 63253489 + 3 NA intron (NR_148705, intron 13 of 16) L1PA16|LINE|L1 -133840 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 487-85 chr14 60541377 60541653 + 3 NA Intergenic Intergenic 32369 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 980-10 chr2 198032047 198032405 + 3 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 227633 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 774-33 chr18 2296135 2296598 + 3 NA Intergenic L1MA5A|LINE|L1 275139 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 643-58 chr2 135757124 135757505 + 3 NA intron (NM_014607, intron 5 of 12) L1MEf|LINE|L1 -14670 NR_163478 107985946 Hs.591242 NM_001365239 LOC107985946 - uncharacterized LOC107985946 ncRNA 652-44 chr15 97821986 97822363 + 3 NA intron (NR_024172, intron 1 of 2) L1MC1|LINE|L1 52255 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 281-21 chr1 190038168 190038320 + 3 NA Intergenic Intergenic 437766 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 866-24 chr18 5201430 5201820 + 3 NA Intergenic Intergenic -3873 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 513-266 chr7 79914921 79915098 + 3 NA Intergenic L1MC4|LINE|L1 -219822 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 583-169 chr8 139524073 139524458 + 3 NA Intergenic Intergenic 178858 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 585-63 chr19 8719444 8719724 + 3 NA Intergenic Intergenic -11370 NM_001004699 284383 Hs.553675 NM_001004699 ENSG00000181733 OR2Z1 OR19-4|OR2Z2 olfactory receptor family 2 subfamily Z member 1 protein-coding 299-53 chr10 62842216 62842411 + 3 NA Intergenic L1ME3G|LINE|L1 -23146 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 578-170 chr8 50875644 50875877 + 3 NA Intergenic L1PA10|LINE|L1 711629 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 489-24 chr10 29229164 29229392 + 3 NA Intergenic Intergenic -59792 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 211-167 chr20 41600731 41600829 + 3 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 17597 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 805-15 chr14 73567973 73568593 + 3 NA promoter-TSS (NM_001364178) promoter-TSS (NM_001364178) 663 NR_046028 10965 Hs.446685 NM_006821 ENSG00000119673 ACOT2 CTE-IA|CTE1A|MTE1|PTE2|PTE2A|ZAP128 acyl-CoA thioesterase 2 protein-coding 601-17 chr10 80846535 80846845 + 3 NA Intergenic L1PB4|LINE|L1 196893 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 457-96 chr17 71291185 71291427 + 3 NA Intergenic Intergenic -89127 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 474-135 chr2 54330465 54330675 + 3 NA promoter-TSS (NM_001100396) promoter-TSS (NM_001100396) -314 NM_001369403 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 337-397 chr4 60278954 60279104 + 3 NA Intergenic L1MA9|LINE|L1 -643590 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 368-460 chr8 110859614 110859796 + 3 NA Intergenic AluJo|SINE|Alu 167728 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 415-281 chr8 80828380 80828588 + 3 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 45984 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 374-273 chr4 39374025 39374168 + 3 NA Intergenic Intergenic -7734 NM_001363496 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 601-66 chr19 37202770 37203174 + 3 NA intron (NM_152279, intron 2 of 4) L1M5|LINE|L1 7564 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 551-60 chr15 60275235 60275450 + 3 NA Intergenic Intergenic 122644 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 376-117 chr15 56259416 56259598 + 3 NA Intergenic L1MEf|LINE|L1 -14425 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 416-262 chr5 3823614 3823807 + 3 NA Intergenic Intergenic 227878 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 520-152 chr2 124260808 124261048 + 3 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 235641 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 818-26 chr2 125959542 125959977 + 3 NA Intergenic Intergenic 158226 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 743-78 chr7 26758256 26758552 + 3 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 99319 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 341-69 chr10 83855650 83855800 + 3 NA Intergenic L1ME1|LINE|L1 -178636 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 668-21 chr12 114397234 114397609 + 3 NA intron (NM_000192, intron 5 of 8) MIRc|SINE|MIR 8723 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 623-84 chr3 83438931 83439278 + 3 NA Intergenic L1M5|LINE|L1 1430471 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 449-142 chr20 38100483 38100671 + 3 NA Intergenic L1MEc|LINE|L1 64693 NM_001323318 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 535-61 chr12 129438552 129438804 + 3 NA intron (NM_133448, intron 3 of 8) L1ME3|LINE|L1 230077 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 441-53 chr12 16884362 16884670 + 3 NA Intergenic Intergenic -104231 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 636-163 chr9 115334620 115335028 + 3 NA intron (NR_163556, intron 4 of 7) L2c|LINE|L2 193006 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 378-441 chr8 116117741 116117930 + 3 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 207224 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 419-73 chr12 63282693 63282869 + 3 NA Intergenic L1MEd|LINE|L1 -129971 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 462-144 chr2 138246450 138246609 + 3 NA Intergenic Intergenic 144645 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 468-59 chr12 60855557 60855752 + 3 NA Intergenic L1ME2|LINE|L1 1166284 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 254-111 chr14 53395121 53395299 + 3 NA Intergenic Intergenic 241856 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 429-171 chr2 241021897 241022134 + 3 NA intron (NM_001080437, intron 1 of 31) L1MB8|LINE|L1 23397 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 528-81 chr14 58083720 58083993 + 3 NA intron (NM_001001872, intron 5 of 7) LTR37A|LTR|ERV1 68357 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 451-76 chr14 83674721 83674957 + 3 NA Intergenic Intergenic 1032207 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 526-175 chr3 114269759 114270011 + 3 NA Intergenic L1PB1|LINE|L1 -24143 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 569-83 chr19 52386894 52387149 + 3 NA Intergenic Intergenic 10736 NR_125345 102724105 Hs.188680 NR_125345 ENSG00000269834 ZNF528-AS1 - ZNF528 antisense RNA 1 ncRNA 1318-4 chr7 100071290 100072119 + 3 NA exon (NM_001371217, exon 4 of 4) exon (NM_001371217, exon 4 of 4) 10019 NM_001362776 7551 Hs.435302 NM_017715 ENSG00000166526 ZNF3 A8-51|HF.12|KOX25|PP838|Zfp113 zinc finger protein 3 protein-coding 1163-4 chr12 100422712 100423319 + 3 NA TTS (NM_139319) TTS (NM_139319) -50851 NR_135146 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 475-179 chr3 54481625 54481834 + 3 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 158128 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 593-92 chr20 58453833 58454255 + 3 NA Intergenic HAL1|LINE|L1 60894 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 531-27 chr10 105107548 105107914 + 3 NA intron (NM_014978, intron 7 of 26) L2a|LINE|L2 -441515 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 650-59 chr2 123290785 123291080 + 3 NA Intergenic Intergenic -217451 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 499-273 chr8 132110156 132110575 + 3 NA Intergenic MIR|SINE|MIR -5100 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 378-126 chr14 20119956 20120088 + 3 NA Intergenic Intergenic 2554 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 444-130 chr2 201503119 201503282 + 3 NA intron (NM_001168216, intron 11 of 12) L1MEc|LINE|L1 51460 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 525-246 chr7 97464481 97464699 + 3 NA Intergenic Intergenic -267496 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 553-13 chr1 235670403 235670609 + 3 NA intron (NM_000081, intron 50 of 52) HERVIP10B3-int|LTR|ERV1 -19752 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 506-10 chr1 111314538 111314785 + 3 NA intron (NM_001258002, intron 2 of 7) intron (NM_001258002, intron 2 of 7) 23810 NM_001040623 27159 Hs.128814 NM_021797 ENSG00000134216 CHIA AMCASE|CHIT2|TSA1902 chitinase acidic protein-coding 681-43 chr20 39415399 39415753 + 3 NA Intergenic Intergenic -190828 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 614-82 chr3 70946437 70946872 + 3 NA Intergenic Intergenic 118270 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 399-189 chr21 22733341 22733531 + 3 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -345848 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 393-107 chr14 98191466 98191623 + 3 NA Intergenic Intergenic -213420 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 432-210 chr4 151067356 151067589 + 3 NA Intergenic L1MB7|LINE|L1 -32101 NM_001267699 6189 Hs.356572 NM_001006 ENSG00000145425 RPS3A FTE1|MFTL|S3A ribosomal protein S3A protein-coding 382-37 chr10 63963850 63964007 + 3 NA Intergenic Intergenic -442038 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 480-51 chr11 131908089 131908402 + 3 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -1679 NM_001352009 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 553-170 chr4 37064885 37065220 + 3 NA Intergenic Intergenic 63273 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 578-91 chr2 120649099 120649445 + 3 NA Intergenic L1MC4|LINE|L1 -86596 NM_001371271 606-19 chr10 72997935 72998301 + 3 NA Intergenic HAL1M8|LINE|L1 -43312 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 554-57 chr12 22887244 22887579 + 3 NA Intergenic L1M4|LINE|L1 262240 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 587-176 chr9 90461063 90461457 + 3 NA Intergenic Intergenic -27771 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 592-138 chr5 22340857 22341207 + 3 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -127182 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 393-299 chr6 39054926 39055156 + 3 NA intron (NR_136563, intron 1 of 13) intron (NR_136563, intron 1 of 13) 6260 NR_136563 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 532-168 chr3 106204568 106204873 + 3 NA Intergenic LTR16C|LTR|ERVL -335319 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 582-131 chr5 161613666 161613878 + 3 NA Intergenic Intergenic -65368 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 230-339 chr7 4115733 4115889 + 3 NA intron (NM_152744, intron 25 of 44) intron (NM_152744, intron 25 of 44) -13874 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 906-11 chr11 50652884 50653447 + 3 NA Intergenic ALR/Alpha|Satellite|centr 244018 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 635-87 chr5 32733160 32733549 + 3 NA intron (NM_001363652, intron 2 of 7) intron (NM_001363652, intron 2 of 7) 22033 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 476-60 chr12 6728526 6728807 + 3 NA intron (NM_016319, intron 4 of 7) intron (NM_016319, intron 4 of 7) 4379 NM_001164093 50813 Hs.530823 NM_016319 ENSG00000111652 COPS7A CSN7|CSN7A|SGN7a COP9 signalosome subunit 7A protein-coding 639-15 chr10 85759639 85759984 + 3 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 182080 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 297-28 chr1 174546385 174546559 + 3 NA TTS (NM_001366449) TTS (NM_001366449) 98508 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 535-9 chr1 70513848 70514266 + 3 NA Intergenic Intergenic 102789 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 499-192 chr4 180630795 180631007 + 3 NA Intergenic Intergenic 528248 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 380-44 chr10 63827820 63828020 + 3 NA Intergenic L1MC5a|LINE|L1 -306030 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 702-61 chr3 41213965 41214505 + 3 NA intron (NM_001904, intron 1 of 14) MER5A|DNA|hAT-Charlie 14730 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 286-127 chr14 80367033 80367248 + 3 NA intron (NR_038355, intron 3 of 8) L1MC3|LINE|L1 -136083 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 311-389 chr4 125520681 125520839 + 3 NA Intergenic L1ME3B|LINE|L1 13501 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 1264-3 chr12 2594628 2595323 + 3 NA intron (NM_199460, intron 19 of 49).2 intron (NM_199460, intron 19 of 49).2 77245 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 452-223 chr5 165978090 165978335 + 3 NA Intergenic LTR103_Mam|LTR|ERV1? 948158 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 852-39 chr4 100242245 100242652 + 3 NA Intergenic LTR62|LTR|ERVL -51980 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 467-84 chr14 66221445 66221686 + 3 NA Intergenic LTR48|LTR|ERV1 -264806 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 671-40 chr2 21756816 21757267 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -46389 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 450-265 chr6 114464816 114465019 + 3 NA Intergenic Intergenic -402040 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 792-17 chr12 118688080 118688595 + 3 NA Intergenic Intergenic 73342 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 141 chr1 24461090 24461141 + 3 NA intron (NM_001322857, intron 10 of 11) L1MC5a|LINE|L1 -41229 NM_001251979 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 623-117 chr6 146034824 146035164 + 3 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 5796 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 905-28 chr5 46205778 46206394 + 3 NA Intergenic ALR/Alpha|Satellite|centr -509706 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 914-4 chr10 76504207 76504786 + 3 NA intron (NM_001305581, intron 6 of 6) L1PA16|LINE|L1 -383548 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 1245 chr17 70268175 70269015 + 3 NA Intergenic MLT2B1|LTR|ERVL 99060 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 295-383 chr5 94075677 94075903 + 3 NA intron (NM_032042, intron 1 of 10) intron (NM_032042, intron 1 of 10) 35873 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 313-302 chr20 9009579 9009732 + 3 NA Intergenic Intergenic -59399 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 536-256 chrX 50794735 50795141 + 3 NA intron (NR_027121, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat 19106 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 419-62 chr12 13867544 13867751 + 3 NA intron (NM_000834, intron 1 of 12) MIRb|SINE|MIR 112709 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 979-22 chr8 129745020 129745486 + 3 NA Intergenic L2a|LINE|L2 41371 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 333-11 chr1 49734670 49734794 + 3 NA intron (NM_001323575, intron 2 of 12) L1M4|LINE|L1 -262647 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 513-260 chr7 32321148 32321487 + 3 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) -21989 NM_001191058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 521-95 chr15 97106912 97107138 + 3 NA Intergenic Intergenic 323590 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 585-118 chr4 184047813 184048035 + 3 NA Intergenic HAL1ME|LINE|L1 142617 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 420-295 chr8 122384838 122385057 + 3 NA Intergenic L2a|LINE|L2 183697 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 598-96 chr4 60740650 60740908 + 3 NA Intergenic L1M5|LINE|L1 -181840 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 501-280 chr9 115102256 115102544 + 3 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 15757 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 532-269 chr8 72470210 72470413 + 3 NA Intergenic Intergenic -66914 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 698-59 chr3 82954768 82955144 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger 968814 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 413-302 chr8 61460426 61460684 + 3 NA intron (NM_173519, intron 5 of 5) HSMAR2|DNA|TcMar-Mariner 172585 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 381-63 chr10 111872684 111872948 + 3 NA Intergenic Intergenic 310949 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 912-7 chr10 113696763 113697136 + 3 NA intron (NM_033338, intron 2 of 7) intron (NM_033338, intron 2 of 7) -12396 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 419-226 chr5 22750944 22751148 + 3 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 102298 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 608-15 chr10 81573513 81573796 + 3 NA Intergenic HAL1|LINE|L1 -301540 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 493-189 chr22 30992826 30993069 + 3 NA Intergenic Intergenic 23736 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 804-59 chr6 41299892 41300218 + 3 NA Intergenic L1PA15|LINE|L1 -13310 NR_136332 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 451-140 chr3 24201559 24201806 + 3 NA intron (NM_001354714, intron 2 of 8) intron (NM_001354714, intron 2 of 8) 50358 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 777-50 chr4 99084920 99085380 + 3 NA exon (NM_000671, exon 2 of 9) exon (NM_000671, exon 2 of 9) 3638 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 572-187 chr8 139504266 139504478 + 3 NA Intergenic Intergenic 198751 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 1018-32 chr8 122982092 122982658 + 3 NA Intergenic Intergenic 43397 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 511-227 chr6 63257264 63257555 + 3 NA Intergenic Intergenic 62568 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 552-171 chr5 45453151 45453387 + 3 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 243111 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 438-300 chr9 130788076 130788340 + 3 NA intron (NM_007313, intron 1 of 10) L1MC4|LINE|L1 -47046 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 728-67 chr4 59373882 59374286 + 3 NA Intergenic Intergenic 360511 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 1068-15 chr5 19492616 19493223 + 3 NA intron (NM_001349559, intron 11 of 12) intron (NM_001349559, intron 11 of 12) 393353 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 648-19 chr11 15192956 15193315 + 3 NA intron (NM_001278316, intron 5 of 10) Arthur1B|DNA|hAT-Tip100 44033 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 571-3 chr1 118530505 118530932 + 3 NA Intergenic L2a|LINE|L2 -345490 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 522-118 chr19 29239791 29240084 + 3 NA Intergenic Intergenic -26786 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 549-51 chr13 55042201 55042477 + 3 NA Intergenic L1MEf|LINE|L1 -132115 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 366-3 chr1 23947495 23947672 + 3 NA Intergenic L1MB3|LINE|L1 -12245 NM_017761 55629 Hs.7862 NM_017761 ENSG00000189266 PNRC2 - proline rich nuclear receptor coactivator 2 protein-coding 255-228 chr20 15212020 15212133 + 3 NA intron (NM_001033087, intron 1 of 13) L1MB7|LINE|L1 15236 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 386-141 chr18 30690519 30690777 + 3 NA Intergenic Intergenic 352094 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 198-255 chr8 140765237 140765326 + 3 NA intron (NM_001352718, intron 14 of 32) intron (NM_001352718, intron 14 of 32) -32628 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 689-57 chr21 10324821 10325183 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -88518 NM_001187 574 Hs.545789 NM_001187 BAGE BAGE1|CT2.1 B melanoma antigen protein-coding 1389 chr10 78488183 78488839 + 3 NA Intergenic L1M4|LINE|L1 221169 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 375-366 chr7 15000596 15000752 + 3 NA Intergenic Intergenic -25816 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 645-61 chr2 169933487 169933777 + 3 NA intron (NM_172070, intron 19 of 38) intron (NM_172070, intron 19 of 38) 106124 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 595-113 chr3 120541721 120542045 + 3 NA Intergenic L1PB2|LINE|L1 -54453 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 429-140 chr2 21860388 21860536 + 3 NA Intergenic L2a|LINE|L2 -149810 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 678-37 chr17 33566306 33566766 + 3 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -32776 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 539-69 chr14 61275125 61275398 + 3 NA Intergenic Intergenic 6077 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 450-250 chr5 145376466 145376725 + 3 NA Intergenic L1PA13|LINE|L1 458747 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 834-53 chr8 126131236 126131690 + 3 NA Intergenic Intergenic -180266 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 388-289 chr5 112512768 112513028 + 3 NA Intergenic L1MB7|LINE|L1 93315 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 522-107 chr17 65952489 65952776 + 3 NA intron (NM_001353129, intron 18 of 26) L1ME1|LINE|L1 -126089 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 557-117 chr2 214104465 214104827 + 3 NA intron (NR_047660, intron 12 of 14) L2a|LINE|L2 -306408 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 423-191 chr4 43215310 43215534 + 3 NA Intergenic L1MEd|LINE|L1 277121 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 294-470 chr8 83885936 83886117 + 3 NA Intergenic Tigger2|DNA|TcMar-Tigger -296761 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 847-41 chr5 96217917 96218414 + 3 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 139027 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 512-269 chr8 81804470 81804687 + 3 NA intron (NR_145472, intron 4 of 6) L1MEd|LINE|L1 37607 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 258-73 chr11 106172566 106172662 + 3 NA Intergenic LTR56|LTR|ERV1 -40498 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 755-70 chr8 70706215 70706570 + 3 NA intron (NM_001287258, intron 4 of 5) intron (NM_001287258, intron 4 of 5) 37053 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 183-8 chr10 4421316 4421420 + 3 NA Intergenic L1MC|LINE|L1 14899 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 656-102 chr6 12995524 12996008 + 3 NA intron (NM_001322313, intron 1 of 12) L1ME3Cz|LINE|L1 -17788 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 561-6 chr1 87874403 87874752 + 3 NA Intergenic MIRb|SINE|MIR -502922 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 211-171 chr21 14854014 14854155 + 3 NA intron (NR_146322, intron 2 of 3) MLT1I|LTR|ERVL-MaLR 64584 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 479-268 chr8 145032635 145032818 + 3 NA Intergenic HERV9N-int|LTR|ERV1 -19741 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 468-69 chr13 84592001 84592266 + 3 NA intron (NR_046871, intron 6 of 6) intron (NR_046871, intron 6 of 6) -191521 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 482-130 chr2 134789994 134790257 + 3 NA Intergenic Intergenic -48491 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 602-102 chr5 21102429 21102804 + 3 NA Intergenic Intergenic -356864 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 400-17 chr1 174531327 174531496 + 3 NA intron (NM_001366446, intron 13 of 25) HAL1|LINE|L1 83447 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 774-79 chr6 61872221 61872569 + 3 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 298265 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 506-120 chr2 7145761 7146094 + 3 NA Intergenic Intergenic -68047 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 500-262 chr6 165566643 165566925 + 3 NA intron (NM_001130690, intron 1 of 21) L2|LINE|L2 95316 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 675-92 chr8 10097286 10097623 + 3 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 1803 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 552-64 chr14 82474445 82474700 + 3 NA Intergenic L1PA3|LINE|L1 -168060 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 441-270 chr8 129976140 129976444 + 3 NA intron (NM_001353245, intron 1 of 13) intron (NM_001353245, intron 1 of 13) 32161 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 470-191 chr4 31653800 31654087 + 3 NA Intergenic MIR|SINE|MIR 147399 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 415-163 chr21 35213994 35214220 + 3 NA Intergenic Intergenic -164809 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 682-35 chr15 59960166 59960537 + 3 NA Intergenic L1M4c|LINE|L1 -43960 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 554-124 chr2 157441894 157442165 + 3 NA intron (NM_004288, intron 1 of 7) intron (NM_004288, intron 1 of 7) 2060 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 730-49 chr3 174455463 174455850 + 3 NA Intergenic L1PA13|LINE|L1 -403678 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 536-248 chr9 18496243 18496421 + 3 NA intron (NM_052866, intron 1 of 12) intron (NM_052866, intron 1 of 12) 22179 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 555-196 chr8 35425552 35425781 + 3 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -118726 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 187-169 chr8 19606329 19606407 + 3 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) -3823 NM_001354491 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 792-30 chr2 30844592 30845034 + 3 NA Intergenic L1ME3G|LINE|L1 -37367 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 728-16 chr11 115393804 115394207 + 3 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -2751 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 514-267 chr7 41598070 41598393 + 3 NA Intergenic L1M4b|LINE|L1 -95688 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 438-227 chr5 113272106 113272287 + 3 NA intron (NM_001085377, intron 3 of 18) MIR|SINE|MIR 22742 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 926-7 chr11 83952238 83952653 + 3 NA intron (NM_001142699, intron 14 of 27) L2a|LINE|L2 -270020 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 500-234 chr5 93309395 93309596 + 3 NA Intergenic Tigger3a|DNA|TcMar-Tigger 261848 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 277-110 chr14 41373620 41373789 + 3 NA Intergenic L1M5|LINE|L1 -233152 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 585-8 chr1 173639352 173639784 + 3 NA intron (NM_198493, intron 3 of 5) HERVIP10B3-int|LTR|ERV1 4230 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 622-20 chr12 15483585 15483843 + 3 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -62897 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 859-18 chr18 2369863 2370272 + 3 NA Intergenic Intergenic 201438 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 342-159 chr15 50093574 50093737 + 3 NA intron (NR_073597, intron 2 of 26) L1MEg|LINE|L1 19724 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 645-74 chr22 43649499 43649899 + 3 NA intron (NM_198856, intron 15 of 29) L1MEg|LINE|L1 133445 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 235-298 chr5 152371493 152371653 + 3 NA Intergenic MER20|DNA|hAT-Charlie 33706 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 606-123 chr4 105304383 105304853 + 3 NA intron (NR_126420, intron 2 of 5) L1M4|LINE|L1 48263 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 289-134 chr14 34333833 34334011 + 3 NA Intergenic Intergenic 128318 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 858-50 chr9 93764884 93765242 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR -54294 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 423-5 chr1 50397311 50397570 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR 26003 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 547-64 chr14 36429213 36429493 + 3 NA Intergenic L2c|LINE|L2 84182 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 1340-7 chr3 194390730 194391601 + 3 NA Intergenic L1M6B|LINE|L1 8101 NM_004488 2814 Hs.73734 NM_004488 ENSG00000178732 GP5 CD42d|GPV glycoprotein V platelet protein-coding 523-200 chr4 76325637 76325893 + 3 NA intron (NM_001042784, intron 22 of 23) intron (NM_001042784, intron 22 of 23) 19739 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 387-279 chr5 56389817 56390030 + 3 NA Intergenic L1PA14|LINE|L1 91846 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 599-126 chr7 52788334 52788617 + 3 NA Intergenic HAL1ME|LINE|L1 -247158 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 764-8 chr10 16557731 16558174 + 3 NA Intergenic L1PA15|LINE|L1 -36073 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 454-68 chr12 16799011 16799242 + 3 NA Intergenic Charlie1b|DNA|hAT-Charlie -189621 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 707-22 chr14 48678511 48678935 + 3 NA Intergenic Intergenic -883709 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 1036-14 chr2 108132890 108133412 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -80396 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 627-53 chr2 57526530 57526863 + 3 NA Intergenic L1MA3|LINE|L1 -380955 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 527-287 chrX 47976227 47976489 + 3 NA exon (NM_001007088, exon 6 of 6) exon (NM_001007088, exon 6 of 6) 27631 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 454-62 chr11 121878588 121878803 + 3 NA Intergenic MER84|LTR|ERV1 221149 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 240-227 chr2 129291840 129291939 + 3 NA Intergenic Intergenic -17998 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 431 chr1 7763684 7763846 + 3 NA intron (NM_001349619, intron 13 of 13) intron (NM_001349619, intron 13 of 13) -7531 NM_004781 9341 Hs.66708 NM_004781 ENSG00000049245 VAMP3 CEB vesicle associated membrane protein 3 protein-coding 758-75 chr8 104225622 104226033 + 3 NA intron (NM_001282882, intron 1 of 5) intron (NM_001282882, intron 1 of 5) 2492 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 465-35 chr10 106861454 106861635 + 3 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 303162 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 1015-14 chr6 60646274 60647076 + 3 NA Intergenic Intergenic -927455 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 820-37 chr4 37518635 37519129 + 3 NA intron (NM_001104629, intron 1 of 3) L1MA1|LINE|L1 64957 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 273-404 chr6 146538097 146538263 + 3 NA Intergenic L1M5|LINE|L1 -5653 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 519-219 chr7 113999773 114000038 + 3 NA Intergenic Intergenic -80896 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 563-78 chr19 27628949 27629170 + 3 NA Intergenic ALR/Alpha|Satellite|centr -164372 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 704-14 chr11 115951932 115952198 + 3 NA Intergenic L1M3e|LINE|L1 -191865 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 542-133 chr3 80383135 80383415 + 3 NA Intergenic L1P4a|LINE|L1 -381622 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 555-26 chr10 111647359 111647589 + 3 NA Intergenic Intergenic 533183 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 619-11 chr1 191846245 191846584 + 3 NA Intergenic Intergenic -312048 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 325-75 chr10 83288000 83288186 + 3 NA Intergenic Intergenic 388996 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 385-369 chr7 136438016 136438200 + 3 NA Intergenic L1MC5|LINE|L1 -430544 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 1044-6 chr15 27072992 27073518 + 3 NA intron (NM_001270873, intron 3 of 5) MLT1E1-int|LTR|ERVL-MaLR 88064 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 848-48 chr8 138235791 138236250 + 3 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -152475 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 626-129 chr7 71047879 71048317 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -84046 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 403-205 chr3 165426202 165426373 + 3 NA intron (NR_125764, intron 3 of 5) intron (NR_125764, intron 3 of 5) 219327 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 332-150 chr14 49077573 49077746 + 3 NA Intergenic L1M5|LINE|L1 508721 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 404-218 chr3 132406967 132407199 + 3 NA Intergenic Intergenic -10419 NM_015268 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 294-133 chr15 26209336 26209449 + 3 NA Intergenic Intergenic 93579 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 752-23 chr16 26789608 26789960 + 3 NA Intergenic L1MEc|LINE|L1 -277143 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 454-123 chr18 4250579 4250873 + 3 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -13876 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 960-21 chr2 119416390 119416990 + 3 NA Intergenic Intergenic -15164 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 905-10 chr14 65538691 65539196 + 3 NA intron (NM_004480, intron 2 of 9) (AAAAC)n|Simple_repeat|Simple_repeat 67841 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 401-179 chr2 214153533 214153782 + 3 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -257397 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 369-332 chr5 101694880 101695020 + 3 NA Intergenic Intergenic 601334 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 489-270 chr9 87018542 87018845 + 3 NA intron (NR_027471, intron 1 of 1) intron (NR_027471, intron 1 of 1) 23433 NR_027471 440173 Hs.127361 NR_027471 ENSG00000269994 LOC440173 - uncharacterized LOC440173 ncRNA 579-18 chr10 83069433 83069728 + 3 NA Intergenic Intergenic 607509 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 723-69 chr7 11415346 11415811 + 3 NA intron (NM_015204, intron 16 of 26) LTR34|LTR|ERV1 416620 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 350-467 chr7 8313585 8313778 + 3 NA intron (NR_125740, intron 3 of 5) L1PA16|LINE|L1 -51069 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 594-58 chr18 46583042 46583368 + 3 NA intron (NM_144612, intron 12 of 39) L1MB7|LINE|L1 -23893 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 451-89 chr17 59537922 59538147 + 3 NA Intergenic L2c|LINE|L2 -11177 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 285-22 chr1 204694650 204694850 + 3 NA Intergenic Intergenic -9012 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 997-18 chr20 33599746 33600316 + 3 NA intron (NM_005093, intron 2 of 11) intron (NM_005093, intron 2 of 11) 37666 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 351-85 chr12 13149324 13149497 + 3 NA Intergenic Intergenic -45743 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 1213 chr10 75944003 75944542 + 3 NA intron (NR_131178, intron 3 of 7) L1MEf|LINE|L1 161511 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 362-227 chr2 132844355 132844587 + 3 NA intron (NM_207481, intron 11 of 17) L1ME3G|LINE|L1 -71086 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 485-62 chr13 32127826 32128093 + 3 NA intron (NM_023037, intron 7 of 60) intron (NM_023037, intron 7 of 60) 96185 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 689-72 chr4 152799228 152799568 + 3 NA intron (NM_001287433, intron 2 of 8) MIRc|SINE|MIR 19444 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 514-22 chr10 24760266 24760562 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -36527 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 544-119 chr2 108132419 108132746 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR -79827 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 374-163 chr19 36639692 36639874 + 3 NA exon (NM_001322826, exon 5 of 5) exon (NM_001322826, exon 5 of 5) 27054 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 296-215 chr2 44278589 44278704 + 3 NA intron (NM_000341, intron 1 of 9) intron (NM_000341, intron 1 of 9) 3166 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 942-33 chr5 60954231 60954915 + 3 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 9368 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 491-254 chr8 72399103 72399277 + 3 NA Intergenic THE1B-int|LTR|ERVL-MaLR -138035 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 412-301 chr7 14328097 14328264 + 3 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -336755 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 456-285 chr6 133009728 133009973 + 3 NA Intergenic Intergenic -78230 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 373-252 chr3 1928684 1928902 + 3 NA Intergenic Intergenic -170010 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 324-38 chr1 215179096 215179241 + 3 NA intron (NM_001017424, intron 5 of 6) L1PA11|LINE|L1 96431 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 369-185 chr2 19670786 19670969 + 3 NA Intergenic Intergenic -197977 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 589-128 chr5 109687005 109687295 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -2216 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 787 chr1 103150096 103150434 + 3 NA Intergenic L1MCa|LINE|L1 -41743 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 880-30 chr4 38810074 38810711 + 3 NA Intergenic LTR47B3|LTR|ERVL -5601 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 261-354 chr7 52826536 52826680 + 3 NA Intergenic Intergenic -209025 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 442-168 chr21 24173753 24173989 + 3 NA Intergenic Intergenic 147506 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 627-21 chr12 22356524 22356863 + 3 NA Intergenic Intergenic -21979 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 369-9 chr1 96924102 96924284 + 3 NA Intergenic MIRb|SINE|MIR -171730 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 636-120 chr6 9162962 9163334 + 3 NA Intergenic L1ME1|LINE|L1 510939 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 215-309 chr8 54209096 54209211 + 3 NA Intergenic MIRb|SINE|MIR 73912 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 314-572 chr8 93687014 93687121 + 3 NA intron (NR_033858, intron 1 of 10) MIRb|SINE|MIR 13366 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 1040-10 chr2 51063420 51064051 + 3 NA intron (NR_135237, intron 2 of 10) L1MB5|LINE|L1 31134 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 370-143 chr14 58389914 58390109 + 3 NA Intergenic L1MC1|LINE|L1 -5919 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 523-139 chr2 133040242 133040486 + 3 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 124807 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 973-7 chr14 56695867 56696471 + 3 NA Intergenic U2|snRNA|snRNA 109498 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 563-105 chr20 21023891 21024280 + 3 NA Intergenic Intergenic 82273 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 487-71 chr13 31775528 31775724 + 3 NA intron (NM_130806, intron 7 of 17) MER20|DNA|hAT-Charlie 36084 NM_001166058 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 482-137 chr2 192491046 192491224 + 3 NA Intergenic L1PA16|LINE|L1 -258710 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 512-111 chr19 44490201 44490475 + 3 NA intron (NM_001288760, intron 3 of 6) intron (NM_001288760, intron 3 of 6) 10184 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 610-80 chr19 58135542 58135890 + 3 NA intron (NM_024620, intron 3 of 3) L1MB8|LINE|L1 15073 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 297-298 chr3 106775412 106775571 + 3 NA Intergenic Intergenic 465147 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 554-150 chr3 163943706 163943899 + 3 NA Intergenic Intergenic 227754 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 196-258 chr8 121470640 121470717 + 3 NA Intergenic Intergenic -168668 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 514-178 chr3 1541312 1541625 + 3 NA Intergenic Intergenic 448444 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 541-72 chr15 59787140 59787362 + 3 NA Intergenic L1PBa1|LINE|L1 -97931 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 480-114 chr17 68652587 68652822 + 3 NA intron (NR_110825, intron 2 of 4) L1ME3G|LINE|L1 24550 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 471-293 chrX 155588426 155588598 + 3 NA intron (NM_018196, intron 1 of 7) L1MA4A|LINE|L1 -24053 NM_001304990 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 546-247 chr8 132862666 132863023 + 3 NA Intergenic L1MDa|LINE|L1 -4114 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 463-179 chr3 311999 312163 + 3 NA intron (NM_001253387, intron 2 of 26) intron (NM_001253387, intron 2 of 26) -7602 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 975-20 chr8 68158137 68158743 + 3 NA intron (NM_024870, intron 35 of 39) LTR56|LTR|ERV1 -171933 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 507-244 chr8 79505212 79505496 + 3 NA Intergenic Intergenic -105763 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 354-217 chr2 114200819 114201081 + 3 NA Intergenic Intergenic -220966 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 521-17 chr1 216507697 216507967 + 3 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -84384 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 901-35 chr7 80626509 80626933 + 3 NA intron (NM_001371077, intron 1 of 14) intron (NM_001371077, intron 1 of 14) 2629 NM_001371078 622-36 chr16 9953054 9953454 + 3 NA intron (NM_001134408, intron 2 of 13) L2|LINE|L2 228813 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 470-127 chr2 60278360 60278636 + 3 NA Intergenic Intergenic 104538 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 700-24 chr13 35968501 35969009 + 3 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) -112894 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 424-90 chr16 54705738 54706020 + 3 NA Intergenic L1MEd|LINE|L1 142354 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 672-41 chr17 62929792 62930187 + 3 NA Intergenic MLT1I|LTR|ERVL-MaLR -14226 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 503-238 chr5 155762216 155762588 + 3 NA Intergenic Intergenic -564355 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 539-38 chr11 100158615 100158823 + 3 NA intron (NM_001243270, intron 12 of 23) L1ME3B|LINE|L1 -528569 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 656-12 chr1 218682213 218682501 + 3 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 172262 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 653-15 chr10 39060186 39060586 + 3 NA Intergenic ALR/Alpha|Satellite|centr 363790 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 468-339 chr9 103762612 103762823 + 3 NA Intergenic L2c|LINE|L2 -236992 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 725-35 chr2 138166600 138167058 + 3 NA Intergenic L1PA16|LINE|L1 64945 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 551-226 chr8 139722467 139722916 + 3 NA Intergenic L1ME3D|LINE|L1 -19568 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 517-69 chr13 90487878 90488069 + 3 NA Intergenic Intergenic -5315 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 219-188 chr2 168253237 168253331 + 3 NA Intergenic MER65A|LTR|ERV1 -5689 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 487-157 chr2 213755428 213755725 + 3 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -2491 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 564-25 chr10 128176231 128176454 + 3 NA Intergenic L1ME3Cz|LINE|L1 -49919 NM_001145966 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 233-356 chr7 56442392 56442472 + 3 NA intron (NR_029420, intron 1 of 5) AluSp|SINE|Alu 5943 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 632-100 chr5 122528723 122529074 + 3 NA Intergenic MLT1J1|LTR|ERVL-MaLR -49811 NR_051996 153163 Hs.679757 NR_051996 ENSG00000250328 MGC32805 - uncharacterized LOC153163 ncRNA 494-223 chr5 35503129 35503451 + 3 NA Intergenic Intergenic -114573 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 561-115 chr20 61012420 61012613 + 3 NA Intergenic MER47A|DNA|TcMar-Tigger -66548 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 432-70 chr12 128209487 128209740 + 3 NA Intergenic Intergenic -57790 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 486-23 chr10 10848465 10848719 + 3 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 49867 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 277-76 chr11 79234899 79235051 + 3 NA intron (NM_001098816, intron 2 of 33) intron (NM_001098816, intron 2 of 33) 167134 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 954-5 chr10 119354826 119355399 + 3 NA intron (NM_005308, intron 2 of 15) MER2|DNA|TcMar-Tigger -22860 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 542-229 chr8 122324108 122324316 + 3 NA Intergenic MIR3|SINE|MIR 244432 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 503-232 chr5 35994002 35994221 + 3 NA intron (NM_001171873, intron 2 of 5) PRIMA4-int|LTR|ERV1 -2721 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 762-56 chr5 108433499 108433823 + 3 NA Intergenic Intergenic -51563 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 181-143 chr6 142840636 142840722 + 3 NA intron (NM_006734, intron 1 of 9) L1ME4c|LINE|L1 104497 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 333-395 chr4 63580241 63580413 + 3 NA Intergenic MER52-int|LTR|ERV1 829123 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 467-90 chr15 79216923 79217101 + 3 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) 7224 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 410-52 chr11 41164367 41164564 + 3 NA intron (NM_001258419, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger 295171 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 688-56 chr17 39826408 39826753 + 3 NA intron (NM_001257409, intron 2 of 5) MER21-int|LTR|ERVL 37608 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 384-163 chr2 46254433 46254630 + 3 NA Intergenic Intergenic -42876 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 523-238 chr6 7442527 7442830 + 3 NA Intergenic LTR12C|LTR|ERV1 52849 NM_001348194 83732 Hs.437474 NM_031480 ENSG00000124784 RIOK1 AD034|RIO1|RRP10|bA288G3.1 RIO kinase 1 protein-coding 1018-21 chr20 14529703 14530286 + 3 NA intron (NM_001351663, intron 4 of 17) LTR16C|LTR|ERVL -24390 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 788-54 chr8 117756340 117756722 + 3 NA Intergenic L1PB4|LINE|L1 164382 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 541-79 chr16 62521983 62522312 + 3 NA Intergenic L1ME1|LINE|L1 -485709 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 479-125 chr20 13263927 13264213 + 3 NA intron (NM_080826, intron 1 of 5) intron (NM_080826, intron 1 of 5) -24383 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 567-73 chr18 1289281 1289638 + 3 NA intron (NR_023926, intron 2 of 5) L1MB8|LINE|L1 70170 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 467-213 chr5 10991645 10991847 + 3 NA intron (NM_001288715, intron 18 of 20) intron (NM_001288715, intron 18 of 20) -230512 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 424-205 chr4 141951141 141951361 + 3 NA Intergenic L1PA16|LINE|L1 314668 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 232-54 chr11 30473015 30473157 + 3 NA intron (NM_001584, intron 3 of 5) L1M5|LINE|L1 107407 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 699-89 chr5 179009803 179010193 + 3 NA Intergenic L1ME3E|LINE|L1 -13806 NM_001353372 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 727-60 chr4 171898213 171898726 + 3 NA intron (NM_001034845, intron 2 of 12) L1ME1|LINE|L1 -84862 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 471-22 chr10 23168153 23168314 + 3 NA Intergenic L1ME4a|LINE|L1 -24079 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 291-318 chr4 48614340 48614525 + 3 NA intron (NM_015030, intron 7 of 63) intron (NM_015030, intron 7 of 63) 124180 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 368-245 chr2 145803513 145803713 + 3 NA Intergenic Intergenic -783444 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 784-43 chr4 364216 364726 + 3 NA intron (NM_003441, intron 3 of 3) L1PA5|LINE|L1 14314 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 450-281 chr7 49223547 49223868 + 3 NA Intergenic L1MA9|LINE|L1 299160 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 447-137 chr2 143235351 143235548 + 3 NA intron (NM_018460, intron 5 of 13) intron (NM_018460, intron 5 of 13) 106030 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 722-42 chr18 12785860 12786279 + 3 NA intron (NM_080423, intron 8 of 8) intron (NM_080423, intron 8 of 8) -36647 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 293-207 chr2 145029913 145030062 + 3 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 362020 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 938-30 chr9 101615744 101616273 + 3 NA intron (NM_133445, intron 5 of 8) L2b|LINE|L2 -21039 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 887-7 chr14 81986470 81987014 + 3 NA Intergenic Intergenic -243604 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 409-303 chr8 135891374 135891637 + 3 NA Intergenic L1M4a1|LINE|L1 434049 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 519-127 chr2 220370682 220370882 + 3 NA Intergenic MIRb|SINE|MIR -464217 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 1203 chr1 95864393 95864870 + 3 NA Intergenic L1MC2|LINE|L1 -127437 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 484-209 chr5 40444759 40444996 + 3 NA Intergenic L1MB8|LINE|L1 -235038 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 305-456 chr5 162591971 162592134 + 3 NA Intergenic L1M4a2|LINE|L1 524410 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 789-14 chr12 44483228 44483826 + 3 NA Intergenic THE1C-int|LTR|ERVL-MaLR 392134 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 541-240 chr8 112604480 112604716 + 3 NA intron (NM_001363185, intron 20 of 66) L1PA15|LINE|L1 -38895 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 589-6 chr1 185522218 185522586 + 3 NA Intergenic L1M5|LINE|L1 106086 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 503-229 chr5 29672559 29672763 + 3 NA Intergenic L1MB7|LINE|L1 -207899 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 1216-8 chr7 49722191 49722844 + 3 NA Intergenic ERVL-E-int|LTR|ERVL -51121 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 644-35 chr18 69174047 69174305 + 3 NA Intergenic L1MEf|LINE|L1 -226712 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 540-81 chr15 88316552 88316971 + 3 NA Intergenic L1ME1|LINE|L1 -60022 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 240-438 chr9 80634439 80634536 + 3 NA Intergenic L1MC3|LINE|L1 659464 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 340-507 chr7 53565613 53565765 + 3 NA Intergenic Intergenic 246242 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 579-66 chr2 22247305 22247595 + 3 NA Intergenic Intergenic -289029 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 379-225 chr3 167230455 167230669 + 3 NA Intergenic L2a|LINE|L2 149721 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 389-257 chr4 44164026 44164191 + 3 NA Intergenic L1MB7|LINE|L1 147046 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 444-291 chrX 74024701 74024862 + 3 NA intron (NR_024582, intron 3 of 4) L1MA4|LINE|L1 80457 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 622-83 chr3 18266411 18266821 + 3 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 158723 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 907-16 chr3 26338780 26339194 + 3 NA Intergenic L1MA5|LINE|L1 -283819 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 282-444 chr8 77857334 77857517 + 3 NA Intergenic ERVL-E-int|LTR|ERVL 406728 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 387-271 chr5 23912818 23912968 + 3 NA Intergenic Intergenic -38455 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 235-366 chr8 117395452 117395591 + 3 NA Intergenic Intergenic -125192 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 312-383 chr4 96702582 96702781 + 3 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 391978 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 378-84 chr11 66113127 66113302 + 3 NA intron (NM_018026, intron 1 of 23) intron (NM_018026, intron 1 of 23) 42942 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 889-32 chr7 6665177 6665684 + 3 NA Intergenic AluSz6|SINE|Alu 28112 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 423-59 chr12 33277743 33277917 + 3 NA Intergenic Intergenic 161989 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 691-36 chr2 29825229 29825731 + 3 NA intron (NM_004304, intron 1 of 28) L2b|LINE|L2 96106 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 472-205 chr3 54582067 54582279 + 3 NA intron (NM_018398, intron 9 of 37) intron (NM_018398, intron 9 of 37) 57684 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 407-331 chr8 130933274 130933465 + 3 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 107540 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 592-88 chr2 123208343 123208659 + 3 NA Intergenic (TAC)n|Simple_repeat|Simple_repeat -135020 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 658-100 chr5 118450341 118450835 + 3 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 111529 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 671-104 chr8 138237895 138238211 + 3 NA intron (NM_015912, intron 7 of 19) MIR3|SINE|MIR -154508 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 397-251 chr5 40988352 40988528 + 3 NA Intergenic L1MEc|LINE|L1 78943 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 490-146 chr2 79869439 79869680 + 3 NA intron (NM_001282598, intron 4 of 17) intron (NM_001282598, intron 4 of 17) -2976 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 326-68 chr10 56837493 56837672 + 3 NA Intergenic Intergenic 466977 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 609-105 chr5 92982966 92983189 + 3 NA Intergenic Intergenic 588266 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 611-116 chr5 45602245 45602705 + 3 NA intron (NM_021072, intron 2 of 7) MLT1B|LTR|ERVL-MaLR 93905 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 281-254 chr20 12121284 12121408 + 3 NA Intergenic L1ME3A|LINE|L1 203453 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 693-42 chr16 82446861 82447392 + 3 NA Intergenic L1PB1|LINE|L1 -179843 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 216-41 chr10 86275472 86275624 + 3 NA intron (NM_017551, intron 2 of 15) L1M4|LINE|L1 -10760 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 538-234 chr8 90617575 90617860 + 3 NA Intergenic HUERS-P1-int|LTR|ERV1 -11654 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 986-14 chr13 58124122 58124691 + 3 NA Intergenic L1MD|LINE|L1 -41421 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 1026-10 chr17 61198821 61199473 + 3 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 168557 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 556-72 chr15 68929944 68930220 + 3 NA promoter-TSS (NR_033671) promoter-TSS (NR_033671) -418 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 454-264 chr5 131096776 131097036 + 3 NA Intergenic Intergenic 68350 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 479-146 chr3 137737471 137737694 + 3 NA Intergenic L1MEi|LINE|L1 -26733 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 380-134 chr15 47609545 47609705 + 3 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -107880 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 611-84 chr2 209058276 209058486 + 3 NA Intergenic Intergenic -365666 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 800-34 chr2 178187388 178187885 + 3 NA Intergenic Intergenic -6845 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 370-382 chr5 166187608 166187827 + 3 NA Intergenic MIR|SINE|MIR 738653 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 494-308 chr9 31669132 31669364 + 3 NA Intergenic Intergenic -287758 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 529-180 chr5 110638932 110639227 + 3 NA intron (NM_001039763, intron 4 of 13) L2b|LINE|L2 87592 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 666-44 chr18 8412941 8413395 + 3 NA Intergenic Intergenic -46134 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 481-253 chr5 113494296 113494517 + 3 NA Intergenic Intergenic -5953 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 423-158 chr21 17952732 17952900 + 3 NA intron (NM_001204177, intron 1 of 4) THE1D|LTR|ERVL-MaLR 35476 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 721-70 chr5 90683079 90683484 + 3 NA intron (NR_003149, intron 27 of 89) AluJo|SINE|Alu 124484 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 368-462 chr8 114911027 114911269 + 3 NA Intergenic L1P4b|LINE|L1 756865 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 521-38 chr10 112276298 112276509 + 3 NA Intergenic MLT1J2|LTR|ERVL-MaLR -6997 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 352-366 chr4 62355384 62355526 + 3 NA Intergenic AluJr|SINE|Alu -193690 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 614-12 chr10 86861382 86861664 + 3 NA intron (NM_004329, intron 2 of 12) intron (NM_004329, intron 2 of 12) -94236 NM_001330120 6623 Hs.349470 NM_003087 ENSG00000173267 SNCG BCSG1|SR synuclein gamma protein-coding 473-131 chr2 49555943 49556230 + 3 NA Intergenic Intergenic -401559 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 663-87 chr5 159389105 159389363 + 3 NA Intergenic L1MC|LINE|L1 57716 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 545-240 chr8 117769103 117769413 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR 151655 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 699-45 chr19 58204664 58205108 + 3 NA intron (NM_133502, intron 4 of 7) MER89|LTR|ERV1 21825 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 995-5 chr14 44836675 44837129 + 3 NA Intergenic MLT1F|LTR|ERVL-MaLR -37776 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 1495-3 chr14 69897199 69898172 + 3 NA intron (NM_001034852, intron 1 of 11) L1MCa|LINE|L1 18269 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 758-52 chr22 48069398 48069785 + 3 NA Intergenic MER101|LTR|ERV1 -204773 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 706-52 chr4 176456468 176456951 + 3 NA Intergenic L1PB4|LINE|L1 136743 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 465-110 chr17 77877685 77877874 + 3 NA Intergenic Intergenic 6308 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 403-74 chr12 38928194 38928361 + 3 NA Intergenic MIRb|SINE|MIR -22686 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 329-572 chr8 82426266 82426459 + 3 NA Intergenic L1PA16|LINE|L1 -485742 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 525-12 chr1 157965271 157965529 + 3 NA Intergenic (CAT)n|Simple_repeat|Simple_repeat -27873 NM_001286349 55243 Hs.272234 NM_018240 ENSG00000183853 KIRREL1 KIRREL|NEPH1 kirre like nephrin family adhesion molecule 1 protein-coding 356-203 chr18 1936132 1936321 + 3 NA Intergenic L1MEc|LINE|L1 -576597 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 606-3 chr1 60792642 60793063 + 3 NA intron (NR_110628, intron 1 of 5) L2c|LINE|L2 32732 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 872-10 chr10 82714281 82714630 + 3 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -481535 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 1269-8 chr3 75042767 75043505 + 3 NA Intergenic L1PA8A|LINE|L1 -171340 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 545-19 chr10 28921382 28921732 + 3 NA Intergenic Intergenic 75149 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 736-80 chr7 53555136 53555557 + 3 NA Intergenic Intergenic 256585 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 944-22 chr5 141420164 141420627 + 3 NA promoter-TSS (NM_032091) promoter-TSS (NM_032091) -656 NM_032091 56105 Hs.368160 NM_018914 ENSG00000253873 PCDHGA11 PCDH-GAMMA-A11 protocadherin gamma subfamily A, 11 protein-coding 619-114 chr6 162103096 162103443 + 3 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -623863 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 462-265 chr7 53209352 53209639 + 3 NA Intergenic LTR101_Mam|LTR|ERVL 173862 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 777-30 chr2 33891527 33892044 + 3 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -163568 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 1075-3 chr10 54731390 54731846 + 3 NA intron (NM_001354404, intron 4 of 34) L1MA4|LINE|L1 69613 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 371-54 chr10 105014287 105014480 + 3 NA intron (NM_014978, intron 4 of 26) L1ME3F|LINE|L1 -348167 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 643-87 chr4 79372288 79372572 + 3 NA Intergenic Intergenic 35798 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 727-33 chr14 73457022 73457411 + 3 NA intron (NM_001005743, intron 1 of 12) intron (NM_001005743, intron 1 of 12) 1364 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 522-58 chr12 629921 630236 + 3 NA promoter-TSS (NR_122124) promoter-TSS (NR_122124) -813 NR_122124 100049716 Hs.655804 NR_122124 ENSG00000177406 LOC100049716 - uncharacterized LOC100049716 ncRNA 713-11 chr1 245164039 245164373 + 3 NA intron (NM_018012, intron 2 of 14) L1MD|LINE|L1 9221 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 665-5 chr1 165335106 165335497 + 3 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 20940 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 396-312 chr6 67525564 67525745 + 3 NA Intergenic Intergenic -529697 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 401-344 chr9 29805323 29805523 + 3 NA Intergenic MER2|DNA|TcMar-Tigger -591822 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 467-209 chr4 120965714 120965974 + 3 NA Intergenic Arthur1|DNA|hAT-Tip100 -42978 NM_018699 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 391-290 chr5 113784964 113785168 + 3 NA Intergenic LTR49-int|LTR|ERV1 271372 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 203-126 chr2 165643882 165643966 + 3 NA intron (NM_024969, intron 2 of 4) intron (NM_024969, intron 2 of 4) 71588 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 420-267 chr7 51607848 51608138 + 3 NA Intergenic Intergenic -214737 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 984-8 chr2 218141905 218142337 + 3 NA Intergenic Intergenic 16093 NM_001557 3579 Hs.846 NM_001557 ENSG00000180871 CXCR2 CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB C-X-C motif chemokine receptor 2 protein-coding 491-135 chr2 189990906 189991188 + 3 NA Intergenic L1PB1|LINE|L1 71682 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 479-193 chr5 51389828 51390071 + 3 NA intron (NM_002202, intron 4 of 5) CpG-22082 6501 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 1121-8 chr3 54457218 54457747 + 3 NA intron (NM_018398, intron 4 of 37) L1MA5|LINE|L1 182375 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 564-6 chr1 50398630 50398983 + 3 NA Intergenic Intergenic 24637 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 703 chr1 33852662 33852960 + 3 NA intron (NM_052896, intron 5 of 69) MER58A|DNA|hAT-Charlie -7664 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 947-7 chr15 95310169 95310885 + 3 NA intron (NR_034095, intron 1 of 3) intron (NR_034095, intron 1 of 3) 16573 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 483-2 chr1 33338434 33338716 + 3 NA intron (NM_198040, intron 8 of 13) intron (NM_198040, intron 8 of 13) -6083 NR_037400 100500853 NR_037400 ENSG00000284154 MIR3605 mir-3605 microRNA 3605 ncRNA 668-94 chr7 30875989 30876301 + 3 NA intron (NR_037598, intron 17 of 19) MLT1C|LTR|ERVL-MaLR -35549 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 464-236 chr7 31973865 31974096 + 3 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 96427 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 574-137 chr5 37988121 37988462 + 3 NA Intergenic Intergenic -37406 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 395-21 chr1 197020115 197020399 + 3 NA Intergenic Intergenic 42720 NM_030787 81494 Hs.282594 NM_030787 ENSG00000134389 CFHR5 CFHL5|CFHR5D|FHR-5|FHR5 complement factor H related 5 protein-coding 425-213 chr4 121518420 121518704 + 3 NA Intergenic Intergenic -137544 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 1003-8 chr14 59700991 59701466 + 3 NA intron (NM_021136, intron 3 of 8) L1MB7|LINE|L1 -54208 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 331-234 chr19 27687677 27687850 + 3 NA Intergenic ALR/Alpha|Satellite|centr -105668 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 569-12 chr1 166772793 166773067 + 3 NA Intergenic L1PB4|LINE|L1 -66545 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 610-143 chr6 782309 782578 + 3 NA Intergenic Intergenic -86055 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 617-69 chr2 148683473 148683770 + 3 NA intron (NM_015630, intron 1 of 13) L1PB1|LINE|L1 38870 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 548-9 chr1 118600269 118600584 + 3 NA Intergenic Intergenic 387917 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 561-55 chr13 44007055 44007379 + 3 NA Intergenic Intergenic -15118 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 502-122 chr18 77801664 77801859 + 3 NA Intergenic Intergenic 191966 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 351-497 chr8 129104272 129104417 + 3 NA Intergenic Intergenic 136896 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 547-80 chr17 15047277 15047575 + 3 NA intron (NR_135638, intron 1 of 1) L1MEd|LINE|L1 16451 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 457-275 chr9 89263995 89264260 + 3 NA Intergenic L1MB3|LINE|L1 -47068 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 511-95 chr18 47758986 47759236 + 3 NA Intergenic L1MEg|LINE|L1 171548 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 906-4 chr1 187640219 187640806 + 3 NA Intergenic Intergenic 196884 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 550-206 chr6 167247254 167247513 + 3 NA Intergenic L2a|LINE|L2 19083 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 446-44 chr10 57380817 57381074 + 3 NA Intergenic (A)n|Simple_repeat|Simple_repeat -76386 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 391-61 chr11 74502192 74502381 + 3 NA Intergenic L1ME2z|LINE|L1 -8562 NM_001144869 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 429-31 chr10 15915563 15915726 + 3 NA Intergenic L1MD3|LINE|L1 -55111 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 378-459 chr9 109548060 109548231 + 3 NA Intergenic L1MEf|LINE|L1 -36600 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 514-165 chr20 7485806 7486064 + 3 NA Intergenic THE1B|LTR|ERVL-MaLR 114327 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 166-92 chr5 30267456 30267515 + 3 NA Intergenic MLT1A0|LTR|ERVL-MaLR 386925 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 598-154 chr9 108125057 108125506 + 3 NA Intergenic Intergenic -635512 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 507-230 chr7 28759540 28759795 + 3 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 73534 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 564-87 chr19 56663672 56664017 + 3 NA exon (NM_001005850, exon 2 of 2) exon (NM_001005850, exon 2 of 2) 7913 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 306-195 chr17 55021618 55021740 + 3 NA intron (NM_178509, intron 8 of 17) intron (NM_178509, intron 8 of 17) -52894 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 386-210 chr20 55623161 55623414 + 3 NA Intergenic Intergenic -196090 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 966-9 chr14 97869581 97870357 + 3 NA Intergenic Intergenic -107138 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 365-283 chr4 36981318 36981504 + 3 NA Intergenic Intergenic -20368 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 328-485 chr6 9367292 9367439 + 3 NA Intergenic Intergenic 715156 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 407-74 chr13 90395628 90395864 + 3 NA Intergenic MER51-int|LTR|ERV1 -97542 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 860-20 chr17 28027213 28027603 + 3 NA Intergenic L1MD|LINE|L1 -15269 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 653-66 chr2 51960480 51960711 + 3 NA intron (NR_135237, intron 7 of 10) LTR16A2|LTR|ERVL -410053 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 369-355 chr6 54550287 54550577 + 3 NA Intergenic MLT1K|LTR|ERVL-MaLR 241991 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 648-63 chr18 75603675 75604103 + 3 NA Intergenic L1MA6|LINE|L1 108514 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 339-390 chr3 192755671 192755854 + 3 NA Intergenic L1MA2|LINE|L1 -28221 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 636-131 chr6 152608616 152609015 + 3 NA intron (NM_182961, intron 3 of 145) AluSc8|SINE|Alu 28036 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 410-85 chr14 70860005 70860184 + 3 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -47365 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 283-412 chr7 41025070 41025212 + 3 NA Intergenic L1ME3Cz|LINE|L1 -45202 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 407-289 chr7 36726034 36726323 + 3 NA Intergenic Intergenic -1629 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 473-86 chr14 63060625 63060903 + 3 NA Intergenic MLT1B|LTR|ERVL-MaLR -15306 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 915-13 chr2 223346202 223346696 + 3 NA Intergenic Intergenic 255912 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 339-319 chr20 42401112 42401295 + 3 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -284280 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 349-491 chr8 30026014 30026177 + 3 NA Intergenic MSTA|LTR|ERVL-MaLR 56969 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 553-88 chr18 1214317 1214666 + 3 NA Intergenic L2a|LINE|L2 145138 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 593-118 chr5 175650341 175650748 + 3 NA Intergenic MSTB-int|LTR|ERVL-MaLR -7527 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 798-18 chr15 25094271 25094664 + 3 NA TTS (NR_003338) TTS (NR_003338) 431 NR_003338 100033435 NR_003338 ENSG00000207279 SNORD116-24 HBII-85-24 small nucleolar RNA, C/D box 116-24 snoRNA 505-258 chr5 164573492 164573707 + 3 NA Intergenic Intergenic 103320 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 570-79 chr16 54464624 54464882 + 3 NA Intergenic L1MC3|LINE|L1 -94054 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 501-207 chr5 43340249 43340550 + 3 NA Intergenic Intergenic -26987 NM_002130 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 202-47 chr11 128090676 128090775 + 3 NA Intergenic L1MEc|LINE|L1 -118041 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 470-2 chr1 29612557 29612828 + 3 NA Intergenic Intergenic -262578 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 451-94 chr18 909707 909862 + 3 NA 3' UTR (NM_001117, exon 4 of 4) 3' UTR (NM_001117, exon 4 of 4) 4418 NM_001117 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 475-59 chr12 33753458 33753631 + 3 NA Intergenic Intergenic -268952 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 714-48 chr3 62117894 62118326 + 3 NA intron (NM_002841, intron 5 of 29) MIR|SINE|MIR 200837 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 512-106 chr18 73952401 73952625 + 3 NA Intergenic Intergenic 195321 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 457-21 chr1 237984477 237984717 + 3 NA Intergenic L1MC5a|LINE|L1 -93675 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 581-166 chr8 61224609 61224805 + 3 NA Intergenic L1P3|LINE|L1 -63263 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 528-4 chr1 40439163 40439353 + 3 NA Intergenic Intergenic -10806 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 709-5 chr10 11360894 11361337 + 3 NA Intergenic L1ME4a|LINE|L1 -16441 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 448-40 chr10 83492515 83492798 + 3 NA Intergenic MER31A|LTR|ERV1 184433 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 375-407 chr8 84553016 84553187 + 3 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) 137617 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 525-79 chr15 78351468 78351785 + 3 NA Intergenic L2|LINE|L2 11273 NM_004378 1381 Hs.346950 NM_004378 ENSG00000166426 CRABP1 CRABP|CRABP-I|CRABPI|RBP5 cellular retinoic acid binding protein 1 protein-coding 570-12 chr1 212396811 212397128 + 3 NA intron (NM_001198862, intron 3 of 8) L1M4a1|LINE|L1 17917 NM_018252 55248 Hs.445386 NM_018252 ENSG00000065600 PACC1 C1orf75|PAC|TMEM206 proton activated chloride channel 1 protein-coding 356-352 chr4 37207556 37207741 + 3 NA Intergenic L1MA1|LINE|L1 34343 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 477-198 chr3 36550248 36550494 + 3 NA Intergenic Intergenic 169884 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 582-109 chr4 59908868 59909080 + 3 NA Intergenic Intergenic 895401 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 238-101 chr14 54889732 54889837 + 3 NA intron (NM_001024071, intron 1 of 5) intron (NM_001024071, intron 1 of 5) -11591 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 482-40 chr10 84605513 84605690 + 3 NA Intergenic Intergenic 180432 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 363-436 chr8 66473932 66474207 + 3 NA Intergenic Intergenic -19497 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 456-193 chr3 4578647 4578890 + 3 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 85420 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 584-10 chr1 95763687 95763933 + 3 NA Intergenic L1MA2|LINE|L1 -228258 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 436-149 chr2 184896785 184896936 + 3 NA intron (NM_194250, intron 2 of 3) L1M5|LINE|L1 270212 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 725-28 chr19 9293701 9294099 + 3 NA 3' UTR (NM_198535, exon 6 of 6) 3' UTR (NM_198535, exon 6 of 6) 15938 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 406-213 chr4 124022262 124022415 + 3 NA Intergenic MIRb|SINE|MIR 248074 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 818-36 chr3 74397014 74397611 + 3 NA intron (NM_020872, intron 4 of 21) Tigger1|DNA|TcMar-Tigger 123828 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 317-489 chr8 101237928 101238096 + 3 NA Intergenic L1MB5|LINE|L1 -31948 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 257-411 chr8 92563064 92563209 + 3 NA Intergenic Intergenic 92358 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 610-39 chr12 118836069 118836427 + 3 NA Intergenic Intergenic -2712 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 414-293 chr6 163996461 163996610 + 3 NA Intergenic Intergenic -325051 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 605-45 chr19 28778717 28779065 + 3 NA Intergenic (ATTCT)n|Simple_repeat|Simple_repeat -51197 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 433-21 chr10 27883350 27883499 + 3 NA intron (NM_001290021, intron 10 of 13) L1M4|LINE|L1 98447 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 530-18 chr1 218883168 218883485 + 3 NA intron (NR_031644, intron 6 of 6) THE1D-int|LTR|ERVL-MaLR 35185 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 394-127 chr16 63527920 63528153 + 3 NA Intergenic Intergenic -1491598 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 394-94 chr13 46250786 46251011 + 3 NA intron (NM_001282460, intron 7 of 9) MIR3|SINE|MIR 38970 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 728-17 chr12 2689439 2690003 + 3 NA intron (NM_199460, intron 49 of 49).2 intron (NM_199460, intron 49 of 49).2 1436 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 579-44 chr15 33405186 33405398 + 3 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 94325 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 433-274 chr8 60174901 60175153 + 3 NA Intergenic Intergenic 106373 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 538-136 chr20 40467841 40468119 + 3 NA Intergenic Intergenic 221256 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 432-30 chr10 43882695 43882965 + 3 NA intron (NR_038268, intron 4 of 4) L1ME4c|LINE|L1 23419 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 315-354 chr4 153330838 153330946 + 3 NA intron (NM_001351057, intron 12 of 12) L1MD2|LINE|L1 -13757 NM_001253861 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 482-73 chr13 106742824 106743045 + 3 NA Intergenic Intergenic 89054 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 560-178 chr8 41677165 41677384 + 3 NA intron (NM_020475, intron 37 of 41) L1ME1|LINE|L1 -12000 NM_020478 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 426-280 chr7 153274753 153274929 + 3 NA Intergenic MER110-int|LTR|ERV1 137393 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 361-461 chr8 126510947 126511105 + 3 NA Intergenic Intergenic 47452 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 403-239 chr5 18351661 18351839 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 544476 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 440-208 chr5 137183253 137183456 + 3 NA intron (NM_004598, intron 3 of 10) intron (NM_004598, intron 3 of 10) 55157 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 820-46 chr5 52302823 52303216 + 3 NA Intergenic LTR102_Mam|LTR|ERVL 294988 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 484-10 chr1 101705643 101705937 + 3 NA Intergenic MLT1G|LTR|ERVL-MaLR 141290 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 379-244 chr4 96313452 96313662 + 3 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 2854 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 687-87 chr4 99764872 99765144 + 3 NA Intergenic MSTB|LTR|ERVL-MaLR -51819 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 360-323 chr4 31901224 31901429 + 3 NA Intergenic Intergenic -96053 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 914-18 chr2 201354204 201354768 + 3 NA intron (NM_001289993, intron 1 of 14) intron (NM_001289993, intron 1 of 14) 2859 NR_110620 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 300-185 chr2 44729109 44729276 + 3 NA intron (NM_024766, intron 7 of 10) intron (NM_024766, intron 7 of 10) 209696 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 287-30 chr1 191730430 191730611 + 3 NA Intergenic Intergenic -427942 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 762-71 chr8 83643513 83643928 + 3 NA Intergenic Intergenic 239962 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 356-79 chr11 36004224 36004354 + 3 NA intron (NM_001304264, intron 1 of 5) MSTA-int|LTR|ERVL-MaLR -5809 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 543-23 chr1 233340973 233341187 + 3 NA intron (NM_032435, intron 1 of 9) intron (NM_032435, intron 1 of 9) 13356 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 459-321 chr8 139931244 139931402 + 3 NA intron (NM_001160372, intron 19 of 22) MIRb|SINE|MIR 169212 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 468-122 chr18 4778224 4778482 + 3 NA Intergenic MER39B|LTR|ERV1 -302829 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 458-217 chr6 11066235 11066461 + 3 NA intron (NR_038964, intron 3 of 4) L1MC5|LINE|L1 21657 NR_038962 100506409 Hs.43818 NR_038962 ELOVL2-AS1 - ELOVL2 antisense RNA 1 ncRNA 335-513 chr7 101552580 101552720 + 3 NA intron (NM_133457, intron 10 of 12) AluSq2|SINE|Alu 16356 NR_103749 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 432-201 chr4 83210453 83210711 + 3 NA Intergenic Intergenic 74213 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 1061-14 chr8 25710955 25711574 + 3 NA Intergenic L1ME3F|LINE|L1 252031 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 631-56 chr2 11990410 11990696 + 3 NA Intergenic L2c|LINE|L2 -16563 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 321-16 chr1 90985190 90985344 + 3 NA intron (NM_201269, intron 1 of 5) L1MA7|LINE|L1 36241 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 716-66 chr5 66530453 66530903 + 3 NA Intergenic MLT1D|LTR|ERVL-MaLR -19074 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 466-138 chr2 125539148 125539393 + 3 NA Intergenic Intergenic 578715 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 809-43 chr5 52044406 52044782 + 3 NA TTS (NR_147166) TTS (NR_147166) 36563 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 433-115 chr18 28795966 28796157 + 3 NA Intergenic Intergenic -618931 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 615-133 chr8 36534038 36534439 + 3 NA Intergenic MER21A|LTR|ERVL -250136 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 480-319 chr9 110860216 110860584 + 3 NA Intergenic THE1C|LTR|ERVL-MaLR 132138 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 520-277 chr7 39603775 39604061 + 3 NA intron (NM_001282446, intron 2 of 2) intron (NM_001282446, intron 2 of 2) -19654 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 510-164 chr2 236892682 236892975 + 3 NA Intergenic HAL1b|LINE|L1 163339 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 479-21 chr10 36544147 36544353 + 3 NA Intergenic AluSq2|SINE|Alu -581607 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 459-261 chr6 73871275 73871474 + 3 NA Intergenic AluJb|SINE|Alu 175171 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 426-262 chr6 165919754 165919982 + 3 NA Intergenic Intergenic -67683 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 619-113 chr6 161221858 161222110 + 3 NA intron (NM_020133, intron 2 of 8) MLT1C|LTR|ERVL-MaLR 52077 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 492-174 chr3 87472395 87472644 + 3 NA Intergenic Intergenic -195935 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 627-121 chr8 134095373 134095826 + 3 NA Intergenic AluSz|SINE|Alu 209103 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 956-15 chr2 22493678 22494188 + 3 NA Intergenic Intergenic -42546 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 394-170 chr2 60983730 60983872 + 3 NA intron (NM_144709, intron 4 of 17) L1ME4b|LINE|L1 33411 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 470-202 chr4 132033444 132033640 + 3 NA Intergenic Intergenic 268704 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 926-13 chr2 37331259 37331666 + 3 NA Intergenic L2c|LINE|L2 -13168 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 634-15 chr10 21458754 21458985 + 3 NA Intergenic Intergenic 37772 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 442-35 chr10 106868788 106869052 + 3 NA intron (NM_001206569, intron 2 of 25) L1PA12|LINE|L1 295786 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 441-203 chr5 90957951 90958110 + 3 NA intron (NR_003149, intron 83 of 89) L1ME1|LINE|L1 356372 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 609-137 chr8 99462508 99462886 + 3 NA intron (NM_017890, intron 23 of 61) MLT1A|LTR|ERVL-MaLR 74033 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 634-52 chr14 20818594 20818966 + 3 NA Intergenic Intergenic -15936 NM_198234 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 1060-20 chr6 54356139 54356581 + 3 NA intron (NM_014464, intron 9 of 10) AluSz6|SINE|Alu 47919 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 258-109 chr13 85192028 85192192 + 3 NA Intergenic Intergenic -44053 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 408-290 chr6 49651295 49651440 + 3 NA Intergenic Intergenic -14493 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 625-131 chrX 84906406 84906688 + 3 NA Intergenic Intergenic -27604 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 421-138 chr2 59793725 59793887 + 3 NA Intergenic L2a|LINE|L2 576098 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 515-235 chr6 71776069 71776451 + 3 NA Intergenic L1ME1|LINE|L1 -110443 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 534-276 chr9 84353065 84353349 + 3 NA intron (NM_022127, intron 1 of 18) intron (NM_022127, intron 1 of 18) -12449 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 453-108 chr2 36759422 36759607 + 3 NA 3' UTR (NM_001177972, exon 6 of 6) 3' UTR (NM_001177972, exon 6 of 6) 62807 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 552-94 chr19 30667693 30667937 + 3 NA intron (NM_001352260, intron 5 of 5) MIR|SINE|MIR 295431 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 546-166 chr4 32384025 32384289 + 3 NA Intergenic Intergenic 33119 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 372-472 chr8 36547138 36547396 + 3 NA Intergenic MER72|LTR|ERV1 -237107 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 494-26 chr10 61206309 61206649 + 3 NA Intergenic Intergenic 190204 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 371-374 chr8 49720387 49720555 + 3 NA Intergenic Intergenic -189325 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 749-100 chr8 136997742 136998137 + 3 NA Intergenic L1MD2|LINE|L1 415649 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 305-437 chr5 74778760 74778905 + 3 NA non-coding (NR_073403, exon 7 of 7) non-coding (NR_073403, exon 7 of 7) -11461 NM_170681 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 563-183 chr8 91257399 91257674 + 3 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 8217 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 563-139 chr4 81987808 81988181 + 3 NA Intergenic MIRb|SINE|MIR 385997 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 467-131 chr2 51443823 51444046 + 3 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 411333 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 398-384 chr9 81569671 81569862 + 3 NA Intergenic L1MC|LINE|L1 119769 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 405-240 chr5 4691838 4692040 + 3 NA Intergenic MER57F|LTR|ERV1 -81542 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 684-5 chr1 64890545 64891071 + 3 NA intron (NM_001321852, intron 1 of 24) intron (NM_001321852, intron 1 of 24) 75741 NM_002227 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 810-38 chr4 169366751 169367078 + 3 NA Intergenic L1M4|LINE|L1 -95958 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 407-313 chr8 3932182 3932364 + 3 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1062641 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 697-72 chr8 102630703 102631036 + 3 NA Intergenic L1ME4a|LINE|L1 23095 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 457-144 chr20 54540043 54540328 + 3 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 64592 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 635-112 chr8 115123314 115123586 + 3 NA Intergenic Intergenic 544563 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 659-129 chr9 115985389 115985783 + 3 NA Intergenic Intergenic -60379 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 286-333 chr4 187816012 187816177 + 3 NA Intergenic Intergenic -143453 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 339-623 chrX 66593292 66593499 + 3 NA Intergenic Intergenic 22635 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 397-238 chr4 178318655 178318890 + 3 NA Intergenic Intergenic -410836 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 459-124 chr19 36188752 36188909 + 3 NA intron (NM_001366188, intron 4 of 4) L1MB4|LINE|L1 24749 NM_001366189 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 333-504 chr6 60663639 60663847 + 3 NA Intergenic Intergenic -910387 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 422-270 chr6 159258826 159259005 + 3 NA intron (NM_032532, intron 18 of 22) intron (NM_032532, intron 18 of 22) -88908 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 362-212 chr2 61515303 61515484 + 3 NA intron (NM_003400, intron 4 of 24) intron (NM_003400, intron 4 of 24) 22963 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 427-2 chr1 49762974 49763216 + 3 NA intron (NM_001323575, intron 2 of 12) L1MA6|LINE|L1 260859 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 470-123 chr2 41925261 41925529 + 3 NA Intergenic MIRb|SINE|MIR 8328 NR_110263 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 489-223 chr6 39495854 39496102 + 3 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -64588 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 782-70 chr8 103531654 103532065 + 3 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -29949 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 207-84 chr14 67369412 67369543 + 3 NA intron (NM_004094, intron 2 of 7) L1MEb|LINE|L1 9149 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 389-311 chr6 40125060 40125223 + 3 NA Intergenic Intergenic -190679 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 818-43 chr4 84578224 84578686 + 3 NA Intergenic Intergenic -4672 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 800-40 chr3 90263481 90263857 + 3 NA Intergenic ALR/Alpha|Satellite|centr 1156048 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 626-50 chr18 4547018 4547377 + 3 NA Intergenic L1MEi|LINE|L1 -91890 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 573-133 chr4 167643486 167643819 + 3 NA Intergenic Intergenic -409062 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 577-49 chr12 34509050 34509270 + 3 NA Intergenic ALR/Alpha|Satellite|centr 486664 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 691-31 chr16 12790079 12790596 + 3 NA intron (NM_018340, intron 1 of 3) intron (NM_018340, intron 1 of 3) 13550 NM_001099455 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 414-7 chr1 69773369 69773632 + 3 NA intron (NM_001370785, intron 3 of 26) intron (NM_001370785, intron 3 of 26) -145822 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 372-39 chr10 28175868 28176122 + 3 NA intron (NR_134518, intron 2 of 16) L1M8|LINE|L1 -102617 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 477-302 chr9 88071979 88072164 + 3 NA intron (NR_135138, intron 1 of 1) L1PB2|LINE|L1 5829 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 856-45 chr7 45294813 45295204 + 3 NA Intergenic L2a|LINE|L2 137217 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 430-47 chr11 4735318 4735671 + 3 NA Intergenic Intergenic 34444 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 235-23 chr1 194624540 194624630 + 3 NA Intergenic Intergenic 1319840 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 396-318 chr6 150847472 150847705 + 3 NA Intergenic Intergenic -18091 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 365-162 chr18 7246132 7246268 + 3 NA Intergenic L2b|LINE|L2 15096 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 655-120 chr8 54200807 54201177 + 3 NA Intergenic L1MA4|LINE|L1 65751 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 529-206 chr7 94769777 94770038 + 3 NA Intergenic Intergenic 113537 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 233-6 chr1 100612434 100612525 + 3 NA Intergenic Intergenic 34525 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 307-449 chr7 46503779 46503934 + 3 NA Intergenic Intergenic 193266 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 294-99 chr13 79825536 79825757 + 3 NA Intergenic Intergenic 21260 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 726-18 chr12 42617875 42618290 + 3 NA intron (NR_110042, intron 5 of 5) LTR49-int|LTR|ERV1 -28336 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 312-429 chr5 113801599 113801721 + 3 NA Intergenic Intergenic 287966 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 346-538 chrUn_KI270589v1 42511 42668 + 3 NA NA (CATTC)n|Satellite|Satellite NA NA 890-28 chr5 42157465 42157901 + 3 NA intron (NR_104635, intron 3 of 3) intron (NR_104635, intron 3 of 3) 17662 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 766-30 chr19 27728952 27729282 + 3 NA Intergenic ALR/Alpha|Satellite|centr -64314 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 586-168 chr9 107196616 107196916 + 3 NA Intergenic AluSz6|SINE|Alu -86513 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 378-186 chr18 3978892 3979073 + 3 NA intron (NR_102696, intron 1 of 4) L1MA7|LINE|L1 16629 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 580-90 chr2 161736794 161737005 + 3 NA intron (NM_001354443, intron 2 of 25) AluJb|SINE|Alu 112483 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 321-483 chr5 175145703 175145880 + 3 NA Intergenic L1MC3|LINE|L1 -150060 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 459-189 chr3 87804671 87804910 + 3 NA intron (NM_001322208, intron 1 of 2) (ATTTTAAC)n|Simple_repeat|Simple_repeat 12084 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 503-200 chr3 104579144 104579445 + 3 NA Intergenic THE1D-int|LTR|ERVL-MaLR -787419 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 844-11 chr11 111101700 111102038 + 3 NA Intergenic Intergenic -4551 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 420-253 chr6 84686912 84687171 + 3 NA Intergenic Intergenic -2417 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 402-40 chr10 123629382 123629635 + 3 NA Intergenic L1MEg|LINE|L1 -36847 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 563-55 chr14 81946773 81947113 + 3 NA Intergenic Intergenic -203805 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 500-316 chr9 36006537 36006743 + 3 NA Intergenic L3|LINE|CR1 -30273 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 833-33 chr6 73317283 73317806 + 3 NA Intergenic L1MC3|LINE|L1 -7179 NR_027005 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 416-7 chr1 59825830 59826061 + 3 NA intron (NM_015888, intron 2 of 21) intron (NM_015888, intron 2 of 21) 10996 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 490-167 chr20 58760842 58761102 + 3 NA Intergenic Intergenic -12453 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 348-132 chr14 28248233 28248388 + 3 NA Intergenic L1MA1|LINE|L1 517009 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 394-146 chr18 76095760 76095928 + 3 NA Intergenic Tigger6a|DNA|TcMar-Tigger -27154 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 529-191 chr5 164643982 164644306 + 3 NA Intergenic Intergenic 173865 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 486-277 chr7 43271571 43271899 + 3 NA intron (NM_001287059, intron 2 of 27) L1PA16|LINE|L1 120840 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 685-27 chr15 47627936 47628358 + 3 NA intron (NM_001198999, intron 4 of 19) L1MD2|LINE|L1 -89358 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 258-357 chr6 164931372 164931564 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -109405 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 840-55 chrX 117015797 117016231 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR -198154 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 599-58 chr2 63205529 63205754 + 3 NA intron (NR_148705, intron 13 of 16) L1MA2|LINE|L1 -86099 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 772-4 chr1 96793639 96794124 + 3 NA intron (NM_001300986, intron 8 of 13) intron (NM_001300986, intron 8 of 13) 71243 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 689-17 chr12 28708399 28708736 + 3 NA Intergenic Intergenic -440711 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 343-318 chr22 26677832 26677976 + 3 NA intron (NR_110543, intron 1 of 5) L2a|LINE|L2 5061 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 673-39 chr16 51586441 51586904 + 3 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -175847 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 355-338 chr3 145100243 145100393 + 3 NA Intergenic L1M5|LINE|L1 968867 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 514-197 chr4 38250166 38250520 + 3 NA Intergenic L1ME1|LINE|L1 -116571 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 533-143 chr3 161675047 161675384 + 3 NA Intergenic L2c|LINE|L2 178407 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 425-252 chr5 179316305 179316508 + 3 NA intron (NM_014244, intron 2 of 21) intron (NM_014244, intron 2 of 21) 29055 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 532-163 chr3 39949877 39950237 + 3 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) 140397 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 454-293 chr7 41902081 41902275 + 3 NA Intergenic MER6|DNA|TcMar-Tigger -199088 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 587-139 chr5 133895999 133896232 + 3 NA Intergenic Intergenic -17562 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 700-46 chr2 13475838 13476257 + 3 NA Intergenic L2c|LINE|L2 -469034 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 405-5 chr1 71718666 71718835 + 3 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 118262 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 567-199 chr9 242185 242561 + 3 NA intron (NM_203447, intron 1 of 47) intron (NM_203447, intron 1 of 47) -26623 NR_160804 157983 Hs.190877 NM_152569 ENSG00000183784 DOCK8-AS1 C9orf66 DOCK8 antisense RNA 1 ncRNA 452-257 chr7 109745397 109745622 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL 214704 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 371-98 chr13 99617352 99617486 + 3 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 10729 NR_104592 171425 Hs.655642 NM_206808 ENSG00000125246 CLYBL CLB citrate lyase beta like protein-coding 559-188 chr8 111587389 111587636 + 3 NA Intergenic Intergenic 210873 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 514-266 chr7 26368347 26368662 + 3 NA intron (NM_001318199, intron 5 of 6) intron (NM_001318199, intron 5 of 6) 4179 NM_001199838 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 428-7 chr1 150095841 150096146 + 3 NA intron (NM_007259, intron 13 of 14) L2a|LINE|L2 28217 NR_103998 11311 Hs.443750 NM_007259 ENSG00000136631 VPS45 H1|H1VPS45|SCN5|VPS45A|VPS45B|VPS54A|VSP45|VSP45A vacuolar protein sorting 45 homolog protein-coding 495-113 chr2 104595053 104595320 + 3 NA Intergenic L1M6|LINE|L1 -84677 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 452-267 chr8 81029403 81029599 + 3 NA intron (NM_018440, intron 3 of 8) intron (NM_018440, intron 3 of 8) 82567 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 475-82 chr14 78638325 78638639 + 3 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 234763 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 272-463 chr8 133136987 133137118 + 3 NA Intergenic Intergenic -34450 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 581-68 chr19 14808987 14809346 + 3 NA intron (NM_001370485, intron 2 of 4) intron (NM_001370485, intron 2 of 4) -9030 NM_198944 26664 Hs.466053 NM_198944 ENSG00000127530 OR7C1 CIT-HSP-146E8|HSTPCR86P|OR19-5|OR7C4|TPCR86 olfactory receptor family 7 subfamily C member 1 protein-coding 700-62 chr3 87467130 87467464 + 3 NA Intergenic L1MA3|LINE|L1 -190713 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 202-54 chr12 110362834 110362970 + 3 NA Intergenic L1MC3|LINE|L1 40828 NM_001137664 51434 Hs.719935 NM_016238 ENSG00000196510 ANAPC7 APC7 anaphase promoting complex subunit 7 protein-coding 367-167 chr17 62836595 62836843 + 3 NA TTS (NR_135634) TTS (NR_135634) 28217 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 728-23 chr12 79754757 79755168 + 3 NA Intergenic Charlie6|DNA|hAT-Charlie -63865 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 595-48 chr14 54102735 54103123 + 3 NA Intergenic L2c|LINE|L2 -146038 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 472-261 chr5 173102159 173102347 + 3 NA intron (NM_153607, intron 4 of 8) L1MA9|LINE|L1 -42278 NM_013979 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 546-129 chr20 55945864 55946123 + 3 NA Intergenic MLT1J|LTR|ERVL-MaLR 59526 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 408-232 chr4 53830859 53831010 + 3 NA Intergenic Intergenic 135033 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 495-72 chr15 99900635 99900879 + 3 NA Intergenic L1MA8|LINE|L1 93734 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 742-2 chr1 83572083 83572389 + 3 NA Intergenic Intergenic 126182 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 395-4 chr1 60370115 60370265 + 3 NA Intergenic Intergenic 252495 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 684-85 chr4 61681937 61682252 + 3 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 479671 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 570-52 chr12 129116160 129116426 + 3 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) 6603 NR_104172 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 606-150 chr7 53796319 53796696 + 3 NA intron (NR_038371, intron 1 of 5) MLT2B4|LTR|ERVL 15424 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 210-256 chr7 11660570 11660688 + 3 NA intron (NM_015204, intron 1 of 26) L1M5|LINE|L1 171569 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 547-221 chr7 54289084 54289367 + 3 NA Intergenic L1MA4A|LINE|L1 -41472 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 710-8 chr10 28133620 28133959 + 3 NA intron (NR_134518, intron 4 of 16) L1ME2|LINE|L1 -60411 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 1121-6 chr2 71955161 71955750 + 3 NA Intergenic L1MC1|LINE|L1 192407 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 440-241 chr8 30202166 30202453 + 3 NA Intergenic Intergenic 45940 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 292-321 chr4 71060109 71060270 + 3 NA Intergenic Intergenic 66540 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 555-168 chr5 125254251 125254521 + 3 NA intron (NR_109882, intron 4 of 5) THE1B-int|LTR|ERVL-MaLR 217555 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 496-303 chr9 28241397 28241634 + 3 NA intron (NM_152570, intron 5 of 6) L1PA10|LINE|L1 477790 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 673-50 chr2 6626498 6626978 + 3 NA intron (NR_110498, intron 2 of 2) intron (NR_110498, intron 2 of 2) 7049 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 455-116 chr19 56460009 56460175 + 3 NA intron (NM_022103, intron 3 of 4) L1MB8|LINE|L1 17253 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 825-49 chr7 48325693 48326133 + 3 NA intron (NM_152701, intron 27 of 61) LTR41|LTR|ERVL 154455 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 475-274 chr8 40712151 40712481 + 3 NA intron (NM_024645, intron 3 of 6) intron (NM_024645, intron 3 of 6) 185510 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 545-91 chr17 31624792 31625084 + 3 NA Intergenic L1ME3B|LINE|L1 49527 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 821-35 chr3 100011812 100012165 + 3 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -47590 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 578-115 chr3 102134632 102134969 + 3 NA Intergenic Intergenic -28905 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 489-22 chr1 241192976 241193268 + 3 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 60850 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 702-23 chr14 61242320 61242739 + 3 NA Intergenic AluSx1|SINE|Alu 38809 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 606-38 chr12 41810568 41810906 + 3 NA Intergenic L1PA16|LINE|L1 46548 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 397-368 chrX 78732937 78733100 + 3 NA Intergenic L1MA1|LINE|L1 -14691 NM_001278000 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 515-107 chr2 42157945 42158180 + 3 NA intron (NR_110584, intron 1 of 3) AluSc8|SINE|Alu -11291 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 206-221 chr5 146690223 146690347 + 3 NA intron (NM_181678, intron 6 of 10) intron (NM_181678, intron 6 of 10) -174172 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 889-29 chr5 23424122 23424607 + 3 NA Intergenic HERVL18-int|LTR|ERVL -83245 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 468-309 chr8 46047163 46047439 + 3 NA Intergenic ALR/Alpha|Satellite|centr 570342 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 270-265 chr4 65619352 65619491 + 3 NA intron (NM_001281767, intron 2 of 16) intron (NM_001281767, intron 2 of 16) 50067 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 202-193 chr4 135953337 135953412 + 3 NA Intergenic (GA)n|Simple_repeat|Simple_repeat -39694 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 402-293 chr6 41761394 41761585 + 3 NA Intergenic L2a|LINE|L2 -14088 NM_001166424 5225 Hs.1867 NM_002630 ENSG00000096088 PGC PEPC|PGII progastricsin protein-coding 391-108 chr14 66154125 66154297 + 3 NA Intergenic Intergenic -332160 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 432-29 chr10 43190213 43190380 + 3 NA Intergenic L1ME3B|LINE|L1 35399 NM_001319654 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 310-273 chr2 175725438 175725643 + 3 NA Intergenic Intergenic 276727 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 435-79 chr14 53143258 53143420 + 3 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 9984 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 615-3 chr1 57510304 57510647 + 3 NA intron (NM_001353980, intron 4 of 5) L2a|LINE|L2 -85554 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 397-347 chr8 136425077 136425260 + 3 NA Intergenic L1M2c|LINE|L1 -105630 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 592-97 chr20 43439484 43439860 + 3 NA Intergenic Intergenic -18224 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 580-206 chr9 29269832 29270065 + 3 NA Intergenic L1ME3B|LINE|L1 -56347 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 740-51 chr21 45681008 45681445 + 3 NA intron (NM_001348238, intron 2 of 16) MLT1A1|LTR|ERVL-MaLR 12352 NR_145492 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 322-480 chr7 23880274 23880430 + 3 NA Intergenic LTR37A|LTR|ERV1 170133 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 508-32 chr10 109522519 109522840 + 3 NA Intergenic Intergenic 400567 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 279-33 chr10 43889216 43889374 + 3 NA intron (NR_038268, intron 4 of 4) intron (NR_038268, intron 4 of 4) -20001 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 641-94 chr5 90329515 90329874 + 3 NA Intergenic L1M2|LINE|L1 -39623 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 664-18 chr10 39393357 39393738 + 3 NA Intergenic ALR/Alpha|Satellite|centr 696951 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 377-373 chr7 54114469 54114642 + 3 NA Intergenic Intergenic -216142 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 373-158 chr17 55600220 55600405 + 3 NA Intergenic L1MB2|LINE|L1 122552 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 411-213 chr4 123969760 123970076 + 3 NA Intergenic Intergenic 195654 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 409-57 chr12 84426721 84426962 + 3 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 485958 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 513-70 chr14 32617215 32617451 + 3 NA intron (NM_004274, intron 7 of 13) L2c|LINE|L2 288035 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 1100-14 chr5 36069504 36070304 + 3 NA Intergenic Intergenic -3022 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 564-11 chr10 10243529 10243773 + 3 NA Intergenic L1MC2|LINE|L1 184929 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 162-20 chr10 84561398 84561452 + 3 NA Intergenic L1MEg|LINE|L1 136256 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 424-272 chr8 59814358 59814544 + 3 NA Intergenic L1MEd|LINE|L1 466949 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 370-451 chr8 127623929 127624095 + 3 NA Intergenic MIRb|SINE|MIR 109955 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 312-522 chr8 100440643 100440883 + 3 NA Intergenic Intergenic 58000 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 615-16 chr11 25941935 25942166 + 3 NA Intergenic Intergenic -247073 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 252-399 chr7 53917275 53917414 + 3 NA Intergenic Intergenic -105413 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 614-11 chr10 65002986 65003352 + 3 NA Intergenic Intergenic -78651 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 533-132 chr3 60971197 60971459 + 3 NA intron (NR_148922, intron 3 of 3) AluSz|SINE|Alu 280124 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 715-60 chr4 55952167 55952553 + 3 NA intron (NM_025009, intron 2 of 25) intron (NM_025009, intron 2 of 25) 3415 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 414-84 chr14 54210960 54211158 + 3 NA Intergenic L4_A_Mam|LINE|RTE-X -185809 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 630-22 chr12 119062349 119062619 + 3 NA intron (NM_194286, intron 1 of 12) Tigger3b|DNA|TcMar-Tigger 80943 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 255-444 chr8 133364292 133364444 + 3 NA Intergenic Intergenic -67064 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 297-428 chr7 30998746 30998849 + 3 NA Intergenic Intergenic 34844 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 245-79 chr11 84544269 84544399 + 3 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 176608 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 585-19 chr10 126915725 126916132 + 3 NA intron (NM_001290223, intron 1 of 51) intron (NM_001290223, intron 1 of 51) 10519 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 497-243 chr5 180274522 180274778 + 3 NA intron (NM_001364608, intron 3 of 12) MLT1E2|LTR|ERVL-MaLR 5958 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 758-11 chr10 69105350 69105796 + 3 NA TTS (NM_001321053) TTS (NM_001321053) 17470 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 639-32 chr13 76841780 76842097 + 3 NA Intergenic MIRb|SINE|MIR 44467 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 248-224 chr20 54576260 54576433 + 3 NA intron (NM_018431, intron 2 of 7) L1ME3|LINE|L1 100753 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 523-37 chr10 69550181 69550522 + 3 NA Intergenic L1ME4a|LINE|L1 23071 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 209-270 chr6 21864517 21864620 + 3 NA intron (NR_015410, intron 4 of 11) intron (NR_015410, intron 4 of 11) 198155 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 362-259 chr22 34355487 34355652 + 3 NA Intergenic MIR|SINE|MIR -432681 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 535-69 chr13 102019456 102019785 + 3 NA intron (NM_175929, intron 1 of 4) MIRb|SINE|MIR 26384 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 668-80 chr5 23305401 23305955 + 3 NA Intergenic Intergenic -201931 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 493-13 chr1 118061442 118061682 + 3 NA intron (NM_206996, intron 18 of 48) L1MA9|LINE|L1 123666 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 437-208 chr5 13488965 13489200 + 3 NA Intergenic L1PA15|LINE|L1 455398 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 1450-5 chr8 107419697 107420684 + 3 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 77728 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 542-47 chr12 61125379 61125722 + 3 NA Intergenic L1MA4A|LINE|L1 1067289 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 508-35 chr10 128810614 128810943 + 3 NA Intergenic Intergenic -102055 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 941-5 chr11 98041877 98042271 + 3 NA Intergenic Intergenic -978875 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 573-181 chr7 35558205 35558501 + 3 NA Intergenic THE1D|LTR|ERVL-MaLR 136782 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 616-59 chr17 3353265 3353628 + 3 NA Intergenic L1M1|LINE|L1 43201 NR_024128 390756 Hs.632245 NM_001005334 ENSG00000180068 OR3A4P OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P olfactory receptor family 3 subfamily A member 4 pseudogene pseudo 272-293 chr4 30412369 30412544 + 3 NA Intergenic Intergenic -307913 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 678-34 chr16 9532241 9532652 + 3 NA Intergenic Intergenic -76941 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 480-183 chr22 28155336 28155543 + 3 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -234827 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 346-7 chr1 67478480 67478705 + 3 NA Intergenic L1MB8|LINE|L1 -48190 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 1160-5 chr22 26964998 26965593 + 3 NA Intergenic MER31B|LTR|ERV1 62003 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 638-15 chr10 51179406 51179899 + 3 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 105165 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 471-223 chr6 34460283 34460488 + 3 NA Intergenic MIR|SINE|MIR -5691 NM_020804 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 616-178 chr9 29403454 29403895 + 3 NA Intergenic Intergenic -190073 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 781-39 chr22 37001481 37001876 + 3 NA intron (NM_178552, intron 3 of 5) MIR|SINE|MIR 6173 NM_178552 339669 Hs.124502 NM_178552 ENSG00000185264 TEX33 C22orf33|EAN57|cE81G9.2 testis expressed 33 protein-coding 532-204 chr5 71952856 71953189 + 3 NA Intergenic Intergenic -154453 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 322-246 chr2 65489996 65490192 + 3 NA Intergenic FLAM_C|SINE|Alu -57495 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 503-139 chr19 58242307 58242505 + 3 NA intron (NM_001320776, intron 4 of 7) intron (NM_001320776, intron 4 of 7) 13492 NM_001320787 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 450-141 chr2 80836888 80837152 + 3 NA Intergenic Intergenic 523641 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 458-255 chr8 85512614 85512842 + 3 NA Intergenic L2b|LINE|L2 -47813 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 495-214 chr6 40684973 40685278 + 3 NA Intergenic MLT1F2|LTR|ERVL-MaLR -97761 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 494-209 chr4 120551274 120551460 + 3 NA Intergenic Intergenic 371499 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 365-136 chr16 10417328 10417578 + 3 NA intron (NM_024997, intron 1 of 11) L1M2|LINE|L1 31392 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 375-172 chr18 887515 887696 + 3 NA Intergenic AluSz6|SINE|Alu -17266 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 563-151 chr5 37979334 37979685 + 3 NA Intergenic Intergenic 31018 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 367-294 chr3 116636797 116637013 + 3 NA Intergenic Intergenic -72883 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 471-277 chr8 137900270 137900563 + 3 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 183129 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 406-246 chr5 150207093 150207236 + 3 NA intron (NM_014228, intron 13 of 13) AluSz6|SINE|Alu 17102 NM_014228 6534 Hs.241597 NM_014228 ENSG00000011083 SLC6A7 PROT solute carrier family 6 member 7 protein-coding 297-256 chr20 12983753 12983987 + 3 NA Intergenic L1ME3B|LINE|L1 -25102 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 754-68 chr5 141196185 141196539 + 3 NA TTS (NM_018930) TTS (NM_018930) -3265 NM_018931 56125 Hs.283084 NM_018931 ENSG00000197479 PCDHB11 ME2|PCDH-BETA11 protocadherin beta 11 protein-coding 541-69 chr15 27312127 27312392 + 3 NA intron (NM_001270873, intron 3 of 5) L1M3d|LINE|L1 -150940 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 629-67 chr2 133062434 133062858 + 3 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 147089 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 289-96 chr12 14637383 14637515 + 3 NA intron (NM_004963, intron 19 of 26) L1MA4A|LINE|L1 59150 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 637-48 chr16 78155966 78156284 + 3 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 56471 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 314-319 chr2 198662282 198662430 + 3 NA Intergenic Intergenic -287259 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 511-116 chr2 52937381 52937567 + 3 NA Intergenic Intergenic -234859 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 528-85 chr14 66861253 66861490 + 3 NA intron (NM_001024218, intron 4 of 21) L1MA2|LINE|L1 -328069 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 543-243 chr8 64922420 64922746 + 3 NA Intergenic L1MA8|LINE|L1 -123846 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 755-26 chr15 68005584 68005896 + 3 NA Intergenic MSTA-int|LTR|ERVL-MaLR -48439 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 511-158 chr21 27284694 27284883 + 3 NA Intergenic Intergenic -317700 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 674-16 chr11 57971301 57971756 + 3 NA Intergenic Intergenic -52353 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 475-132 chr2 80099076 80099365 + 3 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 205532 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 749-68 chr4 42195958 42196377 + 3 NA Intergenic L4_C_Mam|LINE|RTE-X -43512 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 636-114 chr5 114218251 114218529 + 3 NA Intergenic L1MC1|LINE|L1 -143680 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 485-104 chr17 27926280 27926587 + 3 NA Intergenic L1MC4|LINE|L1 -33068 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 787-48 chr7 92900704 92901026 + 3 NA intron (NR_110087, intron 2 of 2) intron (NR_110087, intron 2 of 2) -64238 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 835-4 chr1 157701502 157702157 + 3 NA Intergenic L2b|LINE|L2 -1060 NR_135216 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 490-261 chr7 36821232 36821489 + 3 NA Intergenic HAL1|LINE|L1 -96811 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 362-340 chr5 27245863 27246050 + 3 NA Intergenic (TGTG)n|Simple_repeat|Simple_repeat -207370 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 533-248 chr9 84118869 84119110 + 3 NA Intergenic Intergenic 55546 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 591-168 chr8 122515969 122516333 + 3 NA intron (NR_131202, intron 2 of 3) L3b|LINE|CR1 52493 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 678-77 chr4 77762076 77762458 + 3 NA intron (NM_001365006, intron 4 of 11) L1MEd|LINE|L1 56797 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 431-228 chr5 83786375 83786644 + 3 NA Intergenic Intergenic -65654 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 953-26 chr6 6367553 6367955 + 3 NA intron (NR_026970, intron 5 of 7) intron (NR_026970, intron 5 of 7) -47063 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 486-319 chrX 37878515 37878737 + 3 NA Intergenic Tigger1|DNA|TcMar-Tigger -31055 NM_006520 6990 Hs.446392 NM_006520 ENSG00000165169 DYNLT3 RP3|TCTE1L|TCTEX1L dynein light chain Tctex-type 3 protein-coding 295-58 chr10 114169081 114169224 + 3 NA intron (NM_018017, intron 1 of 15) intron (NM_018017, intron 1 of 15) 5027 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 377-90 chr12 42037869 42038117 + 3 NA Intergenic L1MA3|LINE|L1 106881 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 372-412 chr5 124008941 124009097 + 3 NA Intergenic Intergenic 429501 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 498-33 chr10 66076904 66077158 + 3 NA intron (NM_001127384, intron 14 of 17) L1MC5a|LINE|L1 505606 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 395-178 chr2 133688013 133688277 + 3 NA Intergenic Intergenic -119682 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 362-463 chr9 85345249 85345483 + 3 NA Intergenic Intergenic 396663 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 455-16 chr1 188566894 188567121 + 3 NA Intergenic L1MB7|LINE|L1 1123379 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 331-401 chr4 183062773 183062931 + 3 NA Intergenic MSTD|LTR|ERVL-MaLR 25187 NR_003612 403315 Hs.652187 NR_003612 ENSG00000230219 FAM92A1P2 FAM92A3 family with sequence similarity 92, member A3 pseudo 304-438 chr5 150863102 150863265 + 3 NA intron (NM_001346557, intron 2 of 3) intron (NM_001346557, intron 2 of 3) 16660 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 482-271 chr8 105224812 105225132 + 3 NA Intergenic Intergenic -93466 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 391-295 chr5 129156673 129156932 + 3 NA Intergenic L1M4a1|LINE|L1 59114 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 391-355 chr8 97946246 97946414 + 3 NA intron (NM_002380, intron 4 of 18) intron (NM_002380, intron 4 of 18) 77266 NM_030583 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 658-133 chr9 30261512 30261832 + 3 NA Intergenic L1MA3|LINE|L1 146782 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 290-376 chr5 180454010 180454144 + 3 NA Intergenic HAL1|LINE|L1 -40302 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 349-161 chr14 58133757 58133903 + 3 NA intron (NM_001320173, intron 2 of 4) MIR|SINE|MIR 18383 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 511-55 chr12 129374944 129375243 + 3 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 166492 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 250-30 chr1 229959328 229959444 + 3 NA Intergenic L1MD|LINE|L1 -43331 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 361-453 chr8 106567799 106567973 + 3 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -89922 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 517-93 chr16 53470808 53471110 + 3 NA intron (NM_001323609, intron 17 of 20) intron (NM_001323609, intron 17 of 20) 32250 NM_022476 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 415-275 chr8 43878185 43878440 + 3 NA Intergenic ALR/Alpha|Satellite|centr 585870 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 473-57 chr12 40074811 40075083 + 3 NA intron (NM_052885, intron 1 of 9) L1MCa|LINE|L1 31134 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 456-6 chr1 71976457 71976726 + 3 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -139579 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 480-257 chr6 98501418 98501677 + 3 NA Intergenic Intergenic 330153 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 350-270 chr20 31362395 31362576 + 3 NA Intergenic L1MA8|LINE|L1 -6116 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 498-88 chr14 72338244 72338439 + 3 NA intron (NM_001370288, intron 2 of 16) THE1B|LTR|ERVL-MaLR -178479 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 779-16 chr12 38244884 38245387 + 3 NA Intergenic Ricksha_c|DNA|MULE-MuDR -71639 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 438-262 chr7 87754632 87754819 + 3 NA intron (NM_138290, intron 7 of 11) L1PREC2|LINE|L1 -41402 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 497-188 chr3 175123453 175123675 + 3 NA intron (NM_207015, intron 2 of 13) L2c|LINE|L2 -8322 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 519-220 chr7 125981922 125982314 + 3 NA Intergenic L1PB4|LINE|L1 -717827 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 403-313 chr8 129566406 129566648 + 3 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 8491 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 491-111 chr2 30659156 30659427 + 3 NA Intergenic Intergenic 148155 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 532-263 chr8 48480363 48480720 + 3 NA Intergenic MLT2B2|LTR|ERVL -71026 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 414-201 chr22 35184432 35184581 + 3 NA intron (NR_126356, intron 2 of 5) L1MEf|LINE|L1 46550 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 557-131 chr3 35025017 35025280 + 3 NA intron (NR_110817, intron 2 of 3) L1ME4c|LINE|L1 368875 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 954-28 chr2 183764206 183764919 + 3 NA Intergenic Intergenic -614413 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 961-7 chr2 53270537 53271133 + 3 NA Intergenic L1PA13|LINE|L1 -496948 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 356-158 chr14 97652180 97652418 + 3 NA intron (NR_033943, intron 2 of 3) intron (NR_033943, intron 2 of 3) 34359 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 804-46 chr4 37165354 37165816 + 3 NA Intergenic L2a|LINE|L2 76406 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 449-254 chr7 41518040 41518265 + 3 NA Intergenic Intergenic -175767 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 696-77 chr4 31757841 31758338 + 3 NA Intergenic L2a|LINE|L2 -239290 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 665-115 chr9 82014885 82015320 + 3 NA Intergenic Intergenic 26330 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 298-104 chr13 23243486 23243643 + 3 NA intron (NM_000231, intron 3 of 7) intron (NM_000231, intron 3 of 7) 62643 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 266-387 chr7 10430055 10430209 + 3 NA Intergenic Intergenic -272544 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 485-316 chr9 118693681 118693875 + 3 NA intron (NR_151725, intron 2 of 3) intron (NR_151725, intron 2 of 3) 14107 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 297-481 chr8 106796464 106796574 + 3 NA Intergenic Intergenic -26275 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 453-173 chr4 19435849 19436027 + 3 NA Intergenic Intergenic -815967 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 596-109 chr20 7341959 7342277 + 3 NA Intergenic L1MA4A|LINE|L1 -5315 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 469-213 chr5 30598667 30598849 + 3 NA Intergenic LTR16A2|LTR|ERVL -594928 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 697-75 chr8 132568182 132568495 + 3 NA Intergenic MLT1H1|LTR|ERVL-MaLR -6859 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 537-242 chr7 130359159 130359355 + 3 NA intron (NM_080385, intron 5 of 12) MIRc|SINE|MIR 7870 NR_133928 105375504 Hs.436058 NR_133928 LOC105375504 - uncharacterized LOC105375504 ncRNA 1067-4 chr12 48208184 48208699 + 3 NA Intergenic L1PA16|LINE|L1 -5149 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 339-534 chr7 71916090 71916218 + 3 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 421237 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 758-10 chr10 53201566 53201983 + 3 NA Intergenic L1MB1|LINE|L1 -430074 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 389-83 chr12 99197182 99197388 + 3 NA intron (NM_152788, intron 14 of 25) intron (NM_152788, intron 14 of 25) -42195 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 826-4 chr1 187084403 187084740 + 3 NA Intergenic L1M5|LINE|L1 -8271 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 460-90 chr15 53271272 53271490 + 3 NA Intergenic L1MCc|LINE|L1 155016 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 922-11 chr15 39619229 39619657 + 3 NA intron (NM_152597, intron 10 of 11) intron (NM_152597, intron 10 of 11) 38364 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 471-113 chr18 45009697 45009877 + 3 NA intron (NM_015559, intron 4 of 5) MIRc|SINE|MIR -39621 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 640-59 chr2 36212373 36212659 + 3 NA Intergenic Intergenic 143054 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 457-256 chr8 82886588 82886834 + 3 NA Intergenic L1MB4|LINE|L1 -25393 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 629-136 chr8 141829058 141829417 + 3 NA Intergenic Intergenic -42924 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 484-29 chr10 44157144 44157483 + 3 NA Intergenic L1MDa|LINE|L1 -135437 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 195-262 chr9 103683162 103683271 + 3 NA Intergenic Intergenic -316493 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 431-60 chr11 100351256 100351427 + 3 NA intron (NM_001243270, intron 23 of 23) intron (NM_001243270, intron 23 of 23) -335947 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 634-106 chr3 88211865 88212249 + 3 NA Intergenic Intergenic 62098 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 845-4 chr10 20236306 20236786 + 3 NA intron (NM_032812, intron 12 of 13) intron (NM_032812, intron 12 of 13) -315424 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 388-366 chr9 37581463 37581640 + 3 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -5171 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 738-55 chr6 41385885 41386201 + 3 NA Intergenic AluJo|SINE|Alu 50435 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 518-44 chr10 122787051 122787252 + 3 NA intron (NR_003570, intron 21 of 27) intron (NR_003570, intron 21 of 27) 30457 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 457-180 chr4 98962687 98962873 + 3 NA Intergenic Intergenic -32143 NM_001968 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 348-63 chr10 95982583 95982742 + 3 NA intron (NM_001349008, intron 18 of 34) intron (NM_001349008, intron 18 of 34) -17429 NM_001159747 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 463-212 chr4 66343203 66343431 + 3 NA Intergenic Intergenic 66493 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 973-20 chr3 39751530 39751997 + 3 NA Intergenic Intergenic -57151 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 535-21 chr1 247045167 247045466 + 3 NA intron (NM_033213, intron 1 of 3) MSTB|LTR|ERVL-MaLR 33495 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 891-34 chr6 103229274 103229661 + 3 NA Intergenic L1M4b|LINE|L1 1630079 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 660-50 chr2 226192792 226193204 + 3 NA Intergenic Intergenic 50204 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 718-92 chr8 82019061 82019560 + 3 NA Intergenic Intergenic -177024 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 811-16 chr14 59730193 59730692 + 3 NA intron (NM_021136, intron 2 of 8) L1MB8|LINE|L1 -83422 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 437-82 chr14 87127214 87127522 + 3 NA Intergenic Intergenic 221590 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 514-186 chr3 54519767 54520076 + 3 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 119936 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 609-141 chr8 130403148 130403474 + 3 NA intron (NM_001362925, intron 1 of 29) L1MC5|LINE|L1 40349 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 266-113 chr14 51406806 51406953 + 3 NA Intergenic L1PREC2|LINE|L1 -9744 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 254-245 chr3 78197822 78198017 + 3 NA Intergenic ERVL-B4-int|LTR|ERVL -148956 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 456-147 chr2 20708969 20709144 + 3 NA intron (NR_104233, intron 3 of 4) Tigger4b|DNA|TcMar-Tigger 41912 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 684-37 chr15 33710627 33711097 + 3 NA intron (NM_001243996, intron 43 of 102) MSTA-int|LTR|ERVL-MaLR -257635 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 407 chr1 5024843 5025046 + 3 NA Intergenic Intergenic 370335 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 459-266 chr6 140863218 140863415 + 3 NA Intergenic L1MEd|LINE|L1 179502 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 400-167 chr2 66731997 66732206 + 3 NA Intergenic L1MA5A|LINE|L1 -28874 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 274-374 chr8 29654292 29654466 + 3 NA Intergenic Intergenic 93730 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 342-337 chr3 162896147 162896297 + 3 NA Intergenic L1MA4A|LINE|L1 407079 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 313-456 chr5 169239613 169239756 + 3 NA intron (NM_003062, intron 3 of 35) L1MC3|LINE|L1 24010 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 475-37 chr11 28427815 28428050 + 3 NA Intergenic L1PA11|LINE|L1 49616 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 374-84 chr13 32818842 32818979 + 3 NA intron (NR_047020, intron 4 of 4) L1MA9|LINE|L1 92742 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 439-50 chr11 41238063 41238273 + 3 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 221468 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 578-113 chr3 64211846 64212153 + 3 NA intron (NM_001370528, intron 1 of 7) intron (NM_001370528, intron 1 of 7) 13467 NM_198859 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 943-25 chr8 34768477 34769010 + 3 NA Intergenic Intergenic -15178 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 568-143 chr4 24259411 24259659 + 3 NA intron (NM_001330752, intron 1 of 13) Tigger3a|DNA|TcMar-Tigger 213370 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 755-18 chr13 34793975 34794349 + 3 NA Intergenic Intergenic -148125 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 265-360 chr7 63196551 63196664 + 3 NA Intergenic L1M4a1|LINE|L1 107449 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 389-291 chr5 81155667 81155829 + 3 NA intron (NM_006909, intron 17 of 26) LTR42|LTR|ERVL -77572 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 657-44 chr18 1749161 1749500 + 3 NA Intergenic Intergenic -389701 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 577-10 chr1 100569517 100569883 + 3 NA Intergenic L1ME1|LINE|L1 31561 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 502-272 chr8 117081534 117081748 + 3 NA intron (NM_001172815, intron 2 of 10) MER102b|DNA|hAT-Charlie -53354 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 604-147 chr7 5758042 5758345 + 3 NA intron (NM_207111, intron 2 of 16) intron (NM_207111, intron 2 of 16) 23470 NM_207111 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 687-34 chr14 46078387 46078703 + 3 NA intron (NR_102702, intron 1 of 3) L1MC4|LINE|L1 14386 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 463-8 chr1 60211708 60211980 + 3 NA Intergenic Intergenic -138074 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 674-15 chr11 48114488 48114921 + 3 NA intron (NM_001098503, intron 3 of 8) L1M1|LINE|L1 17922 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 325-93 chr11 13123455 13123648 + 3 NA Intergenic L1MC3|LINE|L1 114235 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 536-40 chr10 129222691 129222880 + 3 NA Intergenic Intergenic -244456 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 336-536 chr8 62210958 62211111 + 3 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -37820 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 395-255 chr4 105036700 105036974 + 3 NA Intergenic L1MA3|LINE|L1 -109038 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 595-19 chr10 80848001 80848205 + 3 NA Intergenic LTR47A2|LTR|ERVL 198306 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 446-71 chr12 10155522 10155875 + 3 NA Intergenic AluJb|SINE|Alu -14901 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 658-95 chr5 30937231 30937652 + 3 NA Intergenic Intergenic -256245 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 464-207 chr5 135082698 135082872 + 3 NA intron (NR_161235, intron 2 of 5) HAL1|LINE|L1 -42738 NR_105049 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 Epist C5orf66 antisense RNA 1 ncRNA 598-42 chr13 111097654 111097931 + 3 NA intron (NR_120415, intron 2 of 2) intron (NR_120415, intron 2 of 2) 1954 NR_120415 101927802 Hs.559193 NR_120415 LINC00368 - long intergenic non-protein coding RNA 368 ncRNA 549-175 chr5_GL000208v1_random 73451 73738 + 3 NA NA ALR/Alpha|Satellite|centr NA NA 340-127 chr13 30631145 30631326 + 3 NA exon (NM_001321532, exon 3 of 8) exon (NM_001321532, exon 3 of 8) -2980 NM_001321534 10208 Hs.533831 NM_005800 ENSG00000132952 USPL1 C13orf22|D13S106E|bA121O19.1 ubiquitin specific peptidase like 1 protein-coding 523-144 chr2 184365564 184365811 + 3 NA Intergenic Intergenic -13288 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 597-120 chr6 94569490 94569790 + 3 NA Intergenic Intergenic 851337 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 713-25 chr14 78085428 78085843 + 3 NA Intergenic Intergenic -84738 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 477-139 chr2 16856952 16857254 + 3 NA Intergenic L1M5|LINE|L1 -191269 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 474-279 chr8 30288339 30288556 + 3 NA Intergenic Intergenic -96054 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 519-45 chr12 15510334 15510622 + 3 NA intron (NM_030667, intron 7 of 26) intron (NM_030667, intron 7 of 26) -36133 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 728-90 chr7 38808898 38809338 + 3 NA intron (NM_014396, intron 7 of 28) L1MA9|LINE|L1 100073 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 425-199 chr4 31185579 31185783 + 3 NA intron (NR_125935, intron 2 of 4) L1M7|LINE|L1 14537 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 546-63 chr13 74099559 74099871 + 3 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 34214 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 522-137 chr2 102014765 102015083 + 3 NA intron (NR_048564, intron 3 of 8) intron (NR_048564, intron 3 of 8) 15963 NR_048564 7850 Hs.25333 NM_004633 ENSG00000115590 IL1R2 CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB interleukin 1 receptor type 2 protein-coding 1015-2 chr10 14060185 14060593 + 3 NA intron (NM_018027, intron 2 of 24) MIR|SINE|MIR -13895 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 615-6 chr10 19594255 19594609 + 3 NA intron (NM_001142308, intron 33 of 39) L1PB2|LINE|L1 134118 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 746-27 chr15 95232824 95233180 + 3 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 94098 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 333-391 chr4 61349057 61349221 + 3 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 146967 NM_001371342 326-491 chr7 42416069 42416259 + 3 NA Intergenic Intergenic -178955 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 465-218 chr5 33507686 33508046 + 2 NA Intergenic MER92-int|LTR|ERV1 67090 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 340-328 chr20 57975330 57975601 + 2 NA Intergenic Intergenic -28439 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 257-203 chr2 115253933 115254155 + 2 NA intron (NM_001321906, intron 2 of 26) MSTB-int|LTR|ERVL-MaLR -55193 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 278-101 chr14 40107011 40107276 + 2 NA Intergenic Intergenic -674643 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 307-188 chr17 55622546 55622759 + 2 NA Intergenic MER96|DNA|hAT-Tip100 100212 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 391-121 chr15 81097690 81098021 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -36415 NM_173528 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 275-44 chr10 59402024 59402231 + 2 NA Intergenic L1MB7|LINE|L1 -38946 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 284-287 chr4 65504913 65505166 + 2 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 164449 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 413-146 chr2 114364470 114364714 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -78049 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 289-38 chr1 227622456 227622740 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 59042 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 278-213 chr2 65738096 65738310 + 2 NA Intergenic L1ME4a|LINE|L1 -305604 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 397-319 chr7 135776775 135777051 + 2 NA Intergenic Intergenic -28100 NM_205855 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 266-154 chr18 5269757 5269959 + 2 NA Intergenic L1MA2|LINE|L1 25868 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 476-56 chr11 121835626 121836009 + 2 NA Intergenic L1MA4|LINE|L1 264027 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 239-427 chr8 137089923 137090125 + 2 NA Intergenic Intergenic 323564 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 361-463 chr8 130603343 130603608 + 2 NA Intergenic L1PB3|LINE|L1 -159801 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 123-2 chr1 69998921 69999010 + 2 NA intron (NM_001370785, intron 11 of 26) intron (NM_001370785, intron 11 of 26) 79643 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 484-279 chr8 139171911 139172295 + 2 NA Intergenic Intergenic -258062 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 247-198 chr2 79263121 79263275 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -103445 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 190-97 chr2 215302188 215302315 + 2 NA Intergenic Intergenic -9808 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 262-331 chr4 164186127 164186307 + 2 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 11494 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 342-80 chr10 110702454 110702794 + 2 NA intron (NM_001134363, intron 1 of 13) intron (NM_001134363, intron 1 of 13) 58288 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 231-305 chr6 39673283 39673496 + 2 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 52019 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 177-7 chr1 112132170 112132315 + 2 NA Intergenic MLT2A1|LTR|ERVL 141706 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 339-212 chr17 54557612 54557871 + 2 NA Intergenic L1MB4|LINE|L1 -342950 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 537-198 chr5 68852549 68853006 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 177150 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 226-21 chr1 190744824 190744976 + 2 NA intron (NR_033922, intron 2 of 4) MLT1B|LTR|ERVL-MaLR 120010 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 346-38 chr1 240641400 240641674 + 2 NA Intergenic Intergenic -29382 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 329-6 chr1 55606625 55606832 + 2 NA Intergenic Intergenic 338235 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 204-89 chr14 63588695 63588843 + 2 NA Intergenic Intergenic -45374 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 430-76 chr13 96877066 96877334 + 2 NA Intergenic Intergenic 106972 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 820-43 chr4 174463150 174463715 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 39637 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 602-33 chr14 66664454 66664934 + 2 NA intron (NM_001024218, intron 1 of 21) L1PA12|LINE|L1 157287 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 234-184 chr2 124539111 124539335 + 2 NA intron (NM_130773, intron 10 of 23) intron (NM_130773, intron 10 of 23) 513936 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 492-130 chr2 97912287 97912632 + 2 NA intron (NM_015348, intron 2 of 40) intron (NM_015348, intron 2 of 40) 83489 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 309-359 chr3 110776859 110777031 + 2 NA Intergenic Intergenic 293014 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 130-59 chr3 163265027 163265110 + 2 NA intron (NR_033945, intron 2 of 6) MLT1G1-int|LTR|ERVL-MaLR 38233 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 317-387 chr5 56487902 56488067 + 2 NA Intergenic LTR12C|LTR|ERV1 -6215 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 304-302 chr20 47695147 47695349 + 2 NA intron (NM_198596, intron 4 of 20) MER58B|DNA|hAT-Charlie 90816 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 243-97 chr12 65964603 65964781 + 2 NA 3' UTR (NM_003483, exon 5 of 5) 3' UTR (NM_003483, exon 5 of 5) 59034 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 517-55 chr12 31838553 31838947 + 2 NA Intergenic Intergenic -46452 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 519-37 chr11 98133262 98133686 + 2 NA Intergenic Intergenic -887475 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 335-390 chr4 94082564 94082809 + 2 NA Intergenic L1PB|LINE|L1 124870 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 399-31 chr10 32184404 32184785 + 2 NA Intergenic Intergenic -128169 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 264-287 chr4 11390846 11391091 + 2 NA Intergenic Intergenic 22141 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 419-5 chr1 48905208 48905615 + 2 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -128442 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 283-300 chr3 135304597 135304825 + 2 NA Intergenic Intergenic 509451 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 417-11 chr1 109143689 109144021 + 2 NA intron (NM_001284352, intron 1 of 20) AluJb|SINE|Alu 29740 NM_020775 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 333-543 chr7 73964164 73964382 + 2 NA Intergenic L1MB8|LINE|L1 -63516 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 374-51 chr11 70447898 70448132 + 2 NA Intergenic Intergenic 49486 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 410-51 chr11 33909790 33910153 + 2 NA Intergenic L1ME3B|LINE|L1 -17895 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 195-31 chr10 99740451 99740591 + 2 NA intron (NM_015960, intron 3 of 8) L1MEc|LINE|L1 -7855 NM_001320974 1355 Hs.28326 NM_004376 ENSG00000014919 COX15 CEMCOX2 cytochrome c oxidase assembly homolog COX15 protein-coding 289-459 chr8 35306503 35306688 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 71120 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 152-10 chr10 56152233 56152349 + 2 NA Intergenic L1M1|LINE|L1 208968 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 501-217 chr5 130432891 130433189 + 2 NA Intergenic L1M4|LINE|L1 528575 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 223-180 chr20 7469094 7469215 + 2 NA Intergenic L1MA2|LINE|L1 97546 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 398-74 chr12 34543873 34544118 + 2 NA Intergenic ALR/Alpha|Satellite|centr 521499 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 230-177 chr2 117671199 117671365 + 2 NA Intergenic LOR1a|LTR|ERV1 -143409 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 374-235 chr22 35155852 35156086 + 2 NA intron (NR_126356, intron 4 of 5) MIR|SINE|MIR 75087 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 272-338 chr5 36880360 36880512 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 3667 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 325-53 chr10 26420129 26420358 + 2 NA Intergenic Intergenic -18098 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 331-8 chr1 81053085 81053411 + 2 NA Intergenic Intergenic -252944 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 489-144 chr2 128934052 128934406 + 2 NA Intergenic L1MA7|LINE|L1 69629 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 352-390 chr4 139811885 139812143 + 2 NA intron (NM_018717, intron 2 of 4) AluJo|SINE|Alu 146195 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 227-60 chr11 36742060 36742221 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -143861 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 364-367 chr5 146747511 146747719 + 2 NA intron (NM_001271899, intron 2 of 9) MER119|DNA|hAT-Charlie 131170 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 405-321 chr8 84348638 84348896 + 2 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -66717 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 389-362 chr8 101986613 101986987 + 2 NA intron (NR_126152, intron 1 of 4) intron (NR_126152, intron 1 of 4) 2368 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 264-454 chrX 99423117 99423374 + 2 NA Intergenic L1MEg|LINE|L1 987028 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 157-47 chr17 49032024 49032158 + 2 NA intron (NM_001160423, intron 5 of 12) intron (NM_001160423, intron 5 of 12) 34706 NM_006546 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 157-70 chr2 194411623 194411771 + 2 NA intron (NR_110222, intron 4 of 5) intron (NR_110222, intron 4 of 5) 67428 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 533-134 chr3 70739478 70739925 + 2 NA Intergenic Intergenic 325223 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 230-276 chr4 151366505 151366694 + 2 NA Intergenic Intergenic -42577 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 279-295 chr4 75061321 75061507 + 2 NA Intergenic Intergenic 23294 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 857-3 chr1 116144781 116145430 + 2 NA Intergenic L1ME3D|LINE|L1 33350 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 135-67 chr8 53449899 53449986 + 2 NA Intergenic L1M4|LINE|L1 74023 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 332-501 chr7 107645760 107645992 + 2 NA Intergenic Intergenic -14952 NM_000441 5172 Hs.571246 NM_000441 ENSG00000091137 SLC26A4 DFNB4|EVA|PDS|TDH2B solute carrier family 26 member 4 protein-coding 411-74 chr12 96561806 96562159 + 2 NA intron (NM_001306084, intron 17 of 67) AluSz|SINE|Alu 72405 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 337-428 chr5 10701047 10701233 + 2 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 60094 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 336-584 chr9 80975371 80975554 + 2 NA Intergenic MER21C|LTR|ERVL 714073 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 335-23 chr1 116747157 116747452 + 2 NA Intergenic HERVIP10B3-int|LTR|ERV1 -7126 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 445-245 chr7 4856721 4857056 + 2 NA TTS (NM_020144) TTS (NM_020144) 5142 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 520-106 chr16 49043415 49043788 + 2 NA Intergenic L1MB7|LINE|L1 238237 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 637-97 chr5 156489356 156489846 + 2 NA intron (NM_001128209, intron 2 of 7) L1M2|LINE|L1 162437 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 303-211 chr2 66810763 66811063 + 2 NA Intergenic L1M5|LINE|L1 -93523 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 569-93 chr2 63387359 63387784 + 2 NA intron (NR_148704, intron 11 of 18) L1PREC2|LINE|L1 50436 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 702-106 chr8 135936510 135936990 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 479294 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 413-61 chr12 16212716 16212993 + 2 NA intron (NM_001170798, intron 7 of 8) L3|LINE|CR1 64831 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 324-289 chr2 172395792 172396110 + 2 NA Intergenic Intergenic -31385 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 481-117 chr17 64247337 64247742 + 2 NA intron (NM_018469, intron 1 of 11) intron (NM_018469, intron 1 of 11) 15721 NM_001288732 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 397-330 chr8 51483546 51483788 + 2 NA exon (NM_144651, exon 6 of 23) exon (NM_144651, exon 6 of 23) 325778 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 626-95 chr3 149998381 149998800 + 2 NA Intergenic L1PB4|LINE|L1 -15224 NM_001079809 653659 Hs.652908 NM_001079809 TMEM183B C1ORF37DUP|C1orf37-DUP transmembrane protein 183B protein-coding 199-134 chr2 237225497 237225640 + 2 NA Intergenic Intergenic 139679 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 282-106 chr12 133151546 133151811 + 2 NA intron (NM_015394, intron 3 of 4) intron (NM_015394, intron 3 of 4) 21051 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 479-275 chr9 78223764 78224175 + 2 NA Intergenic L1ME3A|LINE|L1 -12106 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 342-233 chr2 57542519 57542783 + 2 NA Intergenic L1MEf|LINE|L1 -365000 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 232-83 chr12 128417092 128417292 + 2 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 123100 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 308-250 chr2 169394626 169394836 + 2 NA Intergenic Intergenic -32197 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 285-163 chr18 13741755 13742008 + 2 NA intron (NM_003799, intron 7 of 11) intron (NM_003799, intron 7 of 11) 15208 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 116-36 chr4 130911336 130911405 + 2 NA Intergenic Intergenic 535009 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 261-184 chr2 62350961 62351191 + 2 NA Intergenic Intergenic 135555 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 370-278 chr21 16105851 16106090 + 2 NA intron (NR_111005, intron 1 of 6) intron (NR_111005, intron 1 of 6) 34856 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 458-99 chr17 53473348 53473699 + 2 NA Intergenic AluSz|SINE|Alu -349404 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 544-42 chr11 30225273 30225780 + 2 NA Intergenic Intergenic -5488 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 723-2 chr1 78347634 78348080 + 2 NA intron (NR_027310, intron 4 of 5) L1MB5|LINE|L1 118258 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 219-269 chr4 184802037 184802215 + 2 NA intron (NM_001995, intron 2 of 20) intron (NM_001995, intron 2 of 20) -3080 NR_003542 643036 Hs.689630 NR_003542 ENSG00000249138 SLED1 - proteoglycan 3, pro eosinophil major basic protein 2 pseudogene pseudo 548-126 chr2 196462888 196463247 + 2 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) -100890 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 343-460 chr6 38500269 38500528 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 18802 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 252-334 chr5 66097335 66097567 + 2 NA Intergenic Intergenic -46849 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 662-48 chr2 115476458 115476994 + 2 NA intron (NM_001321912, intron 4 of 25) MSTA|LTR|ERVL-MaLR 132911 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 317-178 chr15 100457992 100458268 + 2 NA intron (NM_001290341, intron 12 of 13) L1ME4c|LINE|L1 85191 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 339-255 chr2 60286087 60286273 + 2 NA Intergenic Intergenic 96856 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 509-169 chr4 31401671 31402068 + 2 NA Intergenic Intergenic -104675 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 356-412 chr5 131763727 131764002 + 2 NA intron (NM_133372, intron 1 of 17) intron (NM_133372, intron 1 of 17) 33153 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 531-123 chr2 162968521 162968988 + 2 NA Intergenic Intergenic -129987 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 452-299 chrX 84794950 84795334 + 2 NA Intergenic L1PA13|LINE|L1 -139009 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 512-141 chr2 227148193 227148645 + 2 NA intron (NM_000092, intron 1 of 47) L1MB7|LINE|L1 16140 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 305-484 chr6 135485862 135486060 + 2 NA intron (NM_017651, intron 4 of 27) MIR|SINE|MIR 11779 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 248-416 chr8 135882365 135882607 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 425030 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 268-114 chr14 49431130 49431382 + 2 NA Intergenic L1PA15|LINE|L1 155124 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 339-620 chrX 31906377 31906638 + 2 NA intron (NM_000109, intron 47 of 78) intron (NM_000109, intron 47 of 78) 248962 NM_004023 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 359-345 chr3 194883641 194883835 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -115029 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 357-332 chr5 10771855 10772034 + 2 NA Intergenic Intergenic -10710 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 376-362 chr7 8667398 8667697 + 2 NA intron (NM_152745, intron 2 of 2) L1M3e|LINE|L1 233938 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 309-438 chr5 58561269 58561516 + 2 NA Intergenic Intergenic -3149 NR_109904 101928600 Hs.694699 NR_109904 ENSG00000250127 LINC02108 - long intergenic non-protein coding RNA 2108 ncRNA 570-83 chr16 75020862 75021377 + 2 NA intron (NM_032268, intron 1 of 4) AluSq2|SINE|Alu 22095 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 206-43 chr11 21481042 21481232 + 2 NA intron (NM_201551, intron 15 of 18) MIR|SINE|MIR -711948 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 373-377 chr7 42332917 42333201 + 2 NA Intergenic L1MB8|LINE|L1 -95850 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 312-120 chr13 26056715 26056969 + 2 NA intron (NR_146971, intron 1 of 1) MamRTE1|LINE|RTE-BovB 2680 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 337-597 chrX 54865654 54865864 + 2 NA Intergenic L1MA8|LINE|L1 51389 NR_002953 677799 Hs.679783 NR_002953 ENSG00000221716 SNORA11 SNORA11A|U107 small nucleolar RNA, H/ACA box 11 snoRNA 351-219 chr2 71915508 71915800 + 2 NA Intergenic L1MEc|LINE|L1 232208 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 490-36 chr10 20443848 20444224 + 2 NA Intergenic Intergenic -107934 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 327-274 chr2 146742684 146742906 + 2 NA Intergenic Intergenic 155738 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 281-271 chr21 28080302 28080484 + 2 NA intron (NR_126010, intron 1 of 4) intron (NR_126010, intron 1 of 4) -10010 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 235-229 chr3 43453604 43453759 + 2 NA intron (NM_001346464, intron 12 of 13) L1MB8|LINE|L1 -101719 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 359-447 chr7 45961295 45961494 + 2 NA Intergenic L1MC5|LINE|L1 -40122 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 272-156 chr18 1618723 1618947 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger -259206 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 578-154 chr7 8356958 8357417 + 2 NA Intergenic Intergenic -76422 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 199-139 chr20 11307034 11307172 + 2 NA Intergenic Intergenic -33720 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 346 chr1 17345592 17345809 + 2 NA intron (NM_012387, intron 8 of 15).2 THE1A|LTR|ERVL-MaLR -26496 NM_207421 353238 Hs.531598 NM_207421 ENSG00000276747 PADI6 PREMBL2|hPADVI peptidyl arginine deiminase 6 protein-coding 296-74 chr11 33793477 33793727 + 2 NA Intergenic L1ME1|LINE|L1 18903 NR_120550 101928440 Hs.202343 NR_120550 ENSG00000254508 FBXO3-DT FBXO3-AS1 FBXO3 divergent transcript ncRNA 555-130 chr3 96476798 96477277 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 117073 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 459-118 chr18 48516402 48516736 + 2 NA Intergenic Intergenic -22462 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 257-300 chr4 60289135 60289355 + 2 NA Intergenic Intergenic -633374 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 360-150 chr16 855202 855419 + 2 NA intron (NR_147885, intron 10 of 11) intron (NR_147885, intron 10 of 11) 49867 NM_001013638 388199 Hs.528461 NM_001013638 PRR25 gs64 proline rich 25 protein-coding 282-146 chr15 62907568 62907773 + 2 NA Intergenic MER41D|LTR|ERV1 83713 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 464-115 chr2 46026692 46027045 + 2 NA intron (NM_005400, intron 10 of 14) L1ME3D|LINE|L1 -270539 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 211-194 chr3 108962424 108962601 + 2 NA intron (NM_014429, intron 27 of 27) intron (NM_014429, intron 27 of 27) -8633 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 346-291 chr22 34990961 34991158 + 2 NA intron (NR_138042, intron 1 of 4) MLT1J2|LTR|ERVL-MaLR 6857 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 421-9 chr1 78463658 78463951 + 2 NA Intergenic L1PA15|LINE|L1 -27170 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 254-91 chr12 123680764 123680955 + 2 NA intron (NM_001143850, intron 5 of 17) intron (NM_001143850, intron 5 of 17) 9746 NM_024809 79867 Hs.167165 NM_024809 ENSG00000168778 TCTN2 C12orf38|JBTS24|MKS8|TECT2 tectonic family member 2 protein-coding 271-8 chr1 74192407 74192603 + 2 NA intron (NM_001105659, intron 1 of 7) intron (NM_001105659, intron 1 of 7) 5671 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 226-305 chr6 80628408 80628616 + 2 NA Intergenic L1M1|LINE|L1 521841 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 241-108 chr14 52328282 52328445 + 2 NA 3' UTR (NM_000956, exon 2 of 2) 3' UTR (NM_000956, exon 2 of 2) 14051 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 336-208 chr17 33207763 33207955 + 2 NA intron (NM_001094, intron 1 of 9) LTR16C|LTR|ERVL 85129 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 334-563 chr9 35215745 35215926 + 2 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 53826 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 280-253 chr3 41919700 41919883 + 2 NA exon (NM_001322500, exon 6 of 36) exon (NM_001322500, exon 6 of 36) 42312 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 625-110 chr8 20999272 20999699 + 2 NA Intergenic L1MC5|LINE|L1 25499 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 275-118 chr15 26489457 26489715 + 2 NA Intergenic HAL1|LINE|L1 139504 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 214-10 chr1 58180611 58180813 + 2 NA intron (NM_001353980, intron 1 of 5) L1MB7|LINE|L1 69791 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 369-378 chr7 11388387 11388733 + 2 NA intron (NM_015204, intron 22 of 26) L1PA7|LINE|L1 414688 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 382-15 chr1 117873076 117873389 + 2 NA intron (NM_017686, intron 13 of 13) intron (NM_017686, intron 13 of 13) 56389 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 227-173 chr2 85938971 85939182 + 2 NA Intergenic MER20|DNA|hAT-Charlie 49796 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 571-143 chr5 155470837 155471346 + 2 NA Intergenic L2a|LINE|L2 457336 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 204-95 chr14 82929118 82929256 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 286555 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 238-203 chr20 22670381 22670600 + 2 NA intron (NR_146527, intron 2 of 2) L1M2|LINE|L1 14854 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 325-313 chr20 55999900 56000194 + 2 NA intron (NM_080617, intron 2 of 2) intron (NM_080617, intron 2 of 2) 5472 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 123-45 chr5 13620399 13620514 + 2 NA Intergenic L2|LINE|L2 324024 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 422-300 chr8 105047328 105047728 + 2 NA Intergenic L1MEg|LINE|L1 -270910 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 486-72 chr14 25699116 25699540 + 2 NA Intergenic Intergenic -649031 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 391-306 chr6 61044355 61044550 + 2 NA Intergenic L1PREC2|LINE|L1 -529678 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 231-21 chr1 175738649 175738787 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 4877 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 316-65 chr10 38817570 38817744 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 121061 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 227-58 chr11 25378013 25378228 + 2 NA Intergenic Intergenic -811003 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 513-240 chr6 36671095 36671531 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 3813 NR_109836 101154753 Hs.741557 NR_109836 ENSG00000281450 PANDAR PANDA promoter of CDKN1A antisense DNA damage activated RNA ncRNA 322-147 chr14 30033514 30033780 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -105800 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 616-87 chr2 123085000 123085542 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -11790 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 304-552 chr9 98798516 98798734 + 2 NA Intergenic L1M2|LINE|L1 -2070 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 549-32 chr11 4050400 4050819 + 2 NA intron (NM_001277962, intron 3 of 12) intron (NM_001277962, intron 3 of 12) -44076 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 623-137 chrX 53765821 53766345 + 2 NA Intergenic MER106B|DNA|hAT-Charlie -79364 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 305-122 chr12 59463695 59463855 + 2 NA Intergenic L1M4|LINE|L1 -132254 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 303-95 chr12 75297176 75297390 + 2 NA intron (NR_149161, intron 6 of 11) LTR85a|LTR|Gypsy? 33041 NM_001286547 84698 Hs.733835 NM_032606 ENSG00000180881 CAPS2 UG0636c06 calcyphosine 2 protein-coding 712-101 chrX 62944215 62944739 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 406855 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 310-290 chr20 40277118 40277394 + 2 NA Intergenic Intergenic 272795 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 411-210 chr4 98269508 98269788 + 2 NA intron (NM_001100427, intron 1 of 14) Tigger4a|DNA|TcMar-Tigger 8264 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 190-185 chr8 132852471 132852608 + 2 NA Intergenic L1MC|LINE|L1 -14419 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 136-20 chr13 34218256 34218350 + 2 NA Intergenic Intergenic -129740 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 164-39 chr15 61703875 61704017 + 2 NA Intergenic L1MC4a|LINE|L1 -25972 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 563-63 chr16 62360060 62360443 + 2 NA Intergenic Intergenic -323813 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 366-474 chr9 116527535 116527746 + 2 NA intron (NR_033973, intron 1 of 11) L1MA8|LINE|L1 23357 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 289-85 chr11 77436362 77436606 + 2 NA intron (NM_001128620, intron 1 of 15) MIR3|SINE|MIR 37579 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 297-464 chr8 77469927 77470138 + 2 NA intron (NR_125830, intron 2 of 2) intron (NR_125830, intron 2 of 2) 19335 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 527-132 chr2 80413447 80413839 + 2 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 100264 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 320-61 chr10 61386856 61387073 + 2 NA Intergenic Intergenic -65675 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 329-144 chr13 71844121 71844289 + 2 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 22987 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 622-63 chr2 99731830 99732187 + 2 NA intron (NM_001025108, intron 9 of 23) L1ME3D|LINE|L1 -241991 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 348-65 chr10 107783102 107783310 + 2 NA Intergenic L1P4a|LINE|L1 286087 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 337-554 chr8 122552740 122552987 + 2 NA intron (NR_131202, intron 2 of 3) MLT1H2|LTR|ERVL-MaLR 15781 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 221-34 chr10 57056366 57056549 + 2 NA Intergenic L1PA13|LINE|L1 248102 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 174-54 chr18 7890710 7890803 + 2 NA intron (NM_002845, intron 3 of 30) L1ME4a|LINE|L1 323440 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 321-206 chr16 9281652 9281873 + 2 NA Intergenic Intergenic -73826 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 304-98 chr12 5499319 5499546 + 2 NA Intergenic Intergenic 5300 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 399-288 chr7 83672266 83672477 + 2 NA Intergenic Intergenic -23232 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 821-49 chr5 160635154 160635898 + 2 NA intron (NM_001366652, intron 10 of 24) L2a|LINE|L2 49865 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 247-136 chr15 95384837 95384996 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -48177 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 543-32 chr10 42468593 42468994 + 2 NA intron (NR_103829, intron 2 of 8) intron (NR_103829, intron 2 of 8) 3447 NR_103829 414194 Hs.568048 NR_103829 ENSG00000182632 CCNYL2 C10orf21|CCNYL2P|bA178A10.2 cyclin Y like 2 (pseudogene) pseudo 556-209 chr7 82112412 82112835 + 2 NA intron (NM_000722, intron 6 of 38) intron (NM_000722, intron 6 of 38) 103446 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 190-146 chr5 51203866 51204015 + 2 NA Intergenic Intergenic 179392 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 196-207 chr5 80433900 80434029 + 2 NA intron (NM_001284236, intron 2 of 18) intron (NM_001284236, intron 2 of 18) 25900 NR_146173 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 550-193 chr5 164837985 164838432 + 2 NA Intergenic L1ME4b|LINE|L1 367929 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 265-197 chr2 155744326 155744526 + 2 NA Intergenic L1M3b|LINE|L1 510505 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 466-17 chr1 195842308 195842665 + 2 NA Intergenic L1PB1|LINE|L1 246229 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 614-146 chr9 35355197 35355624 + 2 NA intron (NM_001371187, intron 2 of 32) intron (NM_001371187, intron 2 of 32) 13514 NM_001371187 245-264 chr4 151741414 151741578 + 2 NA intron (NM_001363341, intron 2 of 11) intron (NM_001363341, intron 2 of 11) 19511 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 209-84 chr13 102084938 102085073 + 2 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -39001 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 401-61 chr12 25691052 25691432 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -42664 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 354-316 chr4 15877511 15877792 + 2 NA Intergenic Intergenic 61089 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 275-81 chr12 18850034 18850296 + 2 NA Intergenic L2a|LINE|L2 112046 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 414-10 chr1 80711015 80711292 + 2 NA Intergenic L1ME1|LINE|L1 69866 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 210-313 chr9 80669338 80669500 + 2 NA Intergenic L1MA4A|LINE|L1 694396 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 386-86 chr13 107822455 107822832 + 2 NA intron (NR_046848, intron 1 of 1) intron (NR_046848, intron 1 of 1) 12815 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 505-257 chr5 164337335 164337702 + 2 NA Intergenic Intergenic 129884 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 372-56 chr10 86605495 86605818 + 2 NA Intergenic L1MEg|LINE|L1 -48891 NM_033282 94233 Hs.283922 NM_033282 ENSG00000122375 OPN4 MOP opsin 4 protein-coding 591-52 chr17 21967598 21967993 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -235200 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 231-218 chr3 23232421 23232591 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 29179 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 253-427 chr9 69700286 69700437 + 2 NA Intergenic Intergenic -27990 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 272-164 chr18 13850830 13850974 + 2 NA Intergenic L1PA16|LINE|L1 26753 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 308-62 chr10 66422000 66422274 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -503899 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 332-31 chr1 194555238 194555522 + 2 NA Intergenic L1ME3A|LINE|L1 1250635 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 273-166 chr16 76423186 76423374 + 2 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 113428 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 298-248 chr2 236078182 236078473 + 2 NA intron (NM_001037131, intron 16 of 17) MLT2C1|LTR|ERVL 90059 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 243-312 chr4 18960926 18961116 + 2 NA Intergenic Intergenic -939146 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 153-3 chr1 61042541 61042617 + 2 NA Intergenic Intergenic -34648 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 502-164 chr21 30820839 30821245 + 2 NA Intergenic AluSx1|SINE|Alu -7768 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 374-212 chr2 206976342 206976679 + 2 NA Intergenic Intergenic 36992 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 414-164 chr2 125884228 125884512 + 2 NA Intergenic LTR83|LTR|ERVL 233615 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 336-419 chr4 64755580 64755765 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 248828 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 328-244 chr2 12906598 12906881 + 2 NA Intergenic MIRb|SINE|MIR 100274 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 354-342 chr4 97421597 97421879 + 2 NA intron (NR_102713, intron 1 of 5) MLT1C|LTR|ERVL-MaLR 54812 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 320-55 chr10 31682083 31682376 + 2 NA Intergenic L1M4|LINE|L1 226697 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 359-338 chr3 173328853 173329108 + 2 NA Intergenic L1MB3|LINE|L1 -66972 NM_001365930 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 265-361 chr7 64803585 64803769 + 2 NA intron (NM_001367573, intron 2 of 3) intron (NM_001367573, intron 2 of 3) 9249 NM_006524 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 350-120 chr13 109461523 109461772 + 2 NA Intergenic L1MA7|LINE|L1 60951 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 426-135 chr2 81030780 81031118 + 2 NA Intergenic L1M1|LINE|L1 435997 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 489-170 chr3 3254951 3255404 + 2 NA Intergenic L1ME1|LINE|L1 -75460 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 324-230 chr18 65257598 65257817 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -492545 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 243-21 chr1 179725610 179725791 + 2 NA Intergenic L2|LINE|L2 -2076 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 426-274 chr7 64190690 64191066 + 2 NA Intergenic Intergenic -16325 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 297-119 chr13 72820373 72820631 + 2 NA intron (NR_146206, intron 5 of 16) intron (NR_146206, intron 5 of 16) 38369 NR_146206 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 620-15 chr10 58538111 58538633 + 2 NA intron (NM_001080512, intron 1 of 20) L1PB4|LINE|L1 25500 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 303-305 chr4 11273931 11274142 + 2 NA Intergenic L2a|LINE|L2 -94791 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 252-131 chr15 87375942 87376100 + 2 NA Intergenic L1PA16|LINE|L1 -200908 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 542-178 chr5 122174748 122175282 + 2 NA intron (NM_001195535, intron 1 of 2) intron (NM_001195535, intron 1 of 2) 14839 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 643-136 chr9 82801930 82802414 + 2 NA Intergenic Intergenic 260970 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 253-92 chr12 12201067 12201257 + 2 NA intron (NM_002336, intron 3 of 22).2 HAL1M8|LINE|L1 65882 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 311-523 chr8 124961008 124961241 + 2 NA Intergenic Intergenic -12171 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 406-72 chr14 40756378 40756596 + 2 NA Intergenic L1PA11|LINE|L1 -198224 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 164 chr1 46975455 46975581 + 2 NA intron (NM_001320289, intron 1 of 11) L1PA15|LINE|L1 14154 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 410-192 chr3 68183432 68183787 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 179362 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 510-21 chr1 217000111 217000470 + 2 NA 5' UTR (NM_001243507, exon 2 of 8) 5' UTR (NM_001243507, exon 2 of 8) -60617 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 722-32 chr14 84838701 84839237 + 2 NA Intergenic L1MC2|LINE|L1 -432963 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 219-389 chrX 99380143 99380313 + 2 NA Intergenic L1MC|LINE|L1 1030045 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 265-386 chr8 61290492 61290709 + 2 NA intron (NM_173519, intron 1 of 5) intron (NM_173519, intron 1 of 5) 2630 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 344-36 chr1 217720164 217720352 + 2 NA intron (NM_138796, intron 5 of 10) LTR41C|LTR|ERVL 64862 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 329-145 chr13 107679756 107680078 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -148669 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 236-313 chr6 151512768 151512937 + 2 NA intron (NM_025059, intron 1 of 10) intron (NM_025059, intron 1 of 10) 18835 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 289-357 chr5 2584765 2584954 + 2 NA Intergenic (ATGG)n|Simple_repeat|Simple_repeat -127732 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 296-109 chr12 83010531 83010714 + 2 NA intron (NM_152588, intron 8 of 11) LOR1a|LTR|ERV1 323467 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 369-138 chr15 93503040 93503306 + 2 NA Intergenic AluJb|SINE|Alu 297107 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 176-9 chr10 10384087 10384183 + 2 NA Intergenic Intergenic 78214 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 304-500 chr8 36323756 36323931 + 2 NA Intergenic MIR|SINE|MIR -460531 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 213-303 chr9 102938178 102938374 + 2 NA Intergenic (ATAATAA)n|Simple_repeat|Simple_repeat -57057 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 916-21 chr3 168761802 168762563 + 2 NA intron (NR_021485, intron 6 of 15) L1M3e|LINE|L1 -139763 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 506-121 chr2 12275280 12275776 + 2 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 76398 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 289-28 chr1 194743699 194743878 + 2 NA Intergenic Intergenic 1344927 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 735-62 chr4 22532970 22533565 + 2 NA Intergenic Intergenic -17201 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 363-252 chr20 17319039 17319243 + 2 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 92101 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 311-533 chr8 140757707 140757951 + 2 NA intron (NR_148037, intron 19 of 34) Tigger3b|DNA|TcMar-Tigger -25176 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 487-100 chr15 88538862 88539303 + 2 NA intron (NR_135741, intron 1 of 5) HERVS71-int|LTR|ERV1 7293 NR_135743 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 478-139 chr2 63431950 63432271 + 2 NA intron (NR_148704, intron 10 of 18) L1M2|LINE|L1 5897 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 559-145 chr5 42086599 42087036 + 2 NA Intergenic Intergenic 88528 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 443-211 chr3 167779378 167779801 + 2 NA intron (NM_005025, intron 1 of 8) LTR37A|LTR|ERV1 43866 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 308-526 chr8 137156013 137156301 + 2 NA Intergenic L1M1|LINE|L1 257431 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 492-111 chr18 1960812 1961243 + 2 NA Intergenic Intergenic -601398 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 219-25 chr1 198358569 198358714 + 2 NA Intergenic MIRb|SINE|MIR 182304 NM_133262 127124 Hs.127743 NM_133262 ENSG00000151418 ATP6V1G3 ATP6G3|Vma10 ATPase H+ transporting V1 subunit G3 protein-coding 329-338 chr21 34256827 34257148 + 2 NA Intergenic MamRep4096|DNA|hAT-Tip100 76310 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 327-94 chr11 86376875 86377064 + 2 NA intron (NM_001156474, intron 1 of 14) L1MC1|LINE|L1 2082 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 649-53 chr2 104306108 104306613 + 2 NA Intergenic Intergenic 101972 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 481-8 chr1 145797499 145797823 + 2 NA intron (NM_014455, intron 1 of 8) L1MB2|LINE|L1 26434 NM_014455 27246 Hs.523550 NM_014455 ENSG00000265491 RNF115 BCA2|ZNF364 ring finger protein 115 protein-coding 384-54 chr11 26736186 26736412 + 2 NA Intergenic L1PA16|LINE|L1 -14239 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 594-134 chr7 8443935 8444390 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 10553 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 468-72 chr14 21571556 21571901 + 2 NA promoter-TSS (NM_001005465) promoter-TSS (NM_001005465) -984 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 574-2 chr1 58379338 58379791 + 2 NA Intergenic Helitron2Na_Mam|RC?|Helitron? -129017 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 292-379 chr6 48829224 48829514 + 2 NA Intergenic Intergenic 633884 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 320-232 chr18 78679061 78679349 + 2 NA Intergenic Intergenic -301070 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 202-220 chr5 180411491 180411672 + 2 NA Intergenic L1MC|LINE|L1 -58245 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 419-294 chr8 90718191 90718511 + 2 NA Intergenic L1PA8|LINE|L1 -72268 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 336-63 chr10 36420027 36420229 + 2 NA Intergenic L1ME3A|LINE|L1 641826 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 243-376 chr6 8127500 8127663 + 2 NA Intergenic Intergenic -24986 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 386-346 chr8 55423206 55423521 + 2 NA intron (NM_052898, intron 2 of 2) AluSx1|SINE|Alu 31958 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 331-361 chr3 106645185 106645481 + 2 NA Intergenic Intergenic 595305 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 375-301 chr4 120401215 120401583 + 2 NA Intergenic Intergenic -334551 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 341-397 chr4 130935453 130935738 + 2 NA Intergenic Intergenic 559234 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 329-623 chrX 84608232 84608446 + 2 NA Intergenic L1P4|LINE|L1 -105886 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 386-283 chr5 19818231 19818510 + 2 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 67902 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 249-248 chr22 36891757 36891938 + 2 NA Intergenic L1ME3F|LINE|L1 -21404 NR_147197 107985578 Hs.474781 NR_147197 ENSG00000183822 NCF4-AS1 - NCF4 antisense RNA 1 ncRNA 441-103 chr18 64646696 64646967 + 2 NA Intergenic MER52A|LTR|ERV1 -386776 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 394-115 chr15 78194315 78194651 + 2 NA intron (NM_015162, intron 3 of 13) intron (NM_015162, intron 3 of 13) 40082 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 346-304 chr3 22286697 22287015 + 2 NA Intergenic L1M3de|LINE|L1 329717 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 178-75 chr20 55158234 55158344 + 2 NA Intergenic L1MDa|LINE|L1 -264754 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 353-364 chr4 36981822 36982093 + 2 NA Intergenic Intergenic -19822 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 255-99 chr13 107947468 107947634 + 2 NA Intergenic L1M1|LINE|L1 -80055 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 392-60 chr12 34518565 34518931 + 2 NA Intergenic ALR/Alpha|Satellite|centr 496252 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 372-273 chr2 230790781 230791081 + 2 NA exon (NM_001130849, exon 3 of 9) exon (NM_001130849, exon 3 of 9) -73254 NM_001287240 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 147-33 chr16 82528995 82529090 + 2 NA Intergenic L3|LINE|CR1 -97927 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 573-118 chr3 100507762 100508198 + 2 NA intron (NM_018004, intron 1 of 5) L1M2b|LINE|L1 15361 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 337-28 chr1 185612318 185612596 + 2 NA intron (NR_110793, intron 2 of 3) L1MA3|LINE|L1 16031 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 368-450 chr8 72405434 72405618 + 2 NA Intergenic L1PA10|LINE|L1 -131699 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 163-117 chr7 109147991 109148100 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -263458 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 247-292 chr4 40189191 40189359 + 2 NA Intergenic Intergenic -1805 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 368-369 chr5 109967465 109967741 + 2 NA Intergenic L2c|LINE|L2 84421 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 291-484 chr8 142437402 142437609 + 2 NA Intergenic L1MC2|LINE|L1 -12144 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 563-86 chr2 36758774 36759274 + 2 NA exon (NM_001177970, exon 6 of 14) exon (NM_001177970, exon 6 of 14) 62317 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 164-37 chr14 66565181 66565303 + 2 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 57835 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 384-214 chr22 43545918 43546240 + 2 NA intron (NM_198856, intron 25 of 29) L1MEd|LINE|L1 29825 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 207-249 chr5 151994963 151995137 + 2 NA intron (NR_109876, intron 1 of 2) L1M2|LINE|L1 36152 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 354-33 chr1 210281118 210281447 + 2 NA Intergenic Intergenic -46970 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 225-254 chr4 153562464 153562647 + 2 NA intron (NM_001131007, intron 7 of 34) intron (NM_001131007, intron 7 of 34) -77613 NR_134873 100419170 Hs.382102 NR_134873 ENSG00000250771 LOC100419170 - toll like receptor 2 pseudogene pseudo 218-22 chr10 9053414 9053601 + 2 NA Intergenic L1ME1|LINE|L1 155518 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 872-30 chr20 63111495 63112287 + 2 NA Intergenic L1M5|LINE|L1 -9572 NR_152601 768097 Hs.635159 NR_003245 ENSG00000231133 HAR1B HAR1R|LINC00065|NCRNA00065 highly accelerated region 1B ncRNA 539-64 chr14 33723512 33723919 + 2 NA intron (NM_001165893, intron 5 of 10) (A)n|Simple_repeat|Simple_repeat 14778 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 350-64 chr10 126675524 126675808 + 2 NA Intergenic Intergenic -5156 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 495-270 chr9 68645106 68645597 + 2 NA Intergenic Intergenic -59889 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 352-487 chr7 26614214 26614516 + 2 NA Intergenic L2c|LINE|L2 -23506 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 238-28 chr1 238525901 238526089 + 2 NA Intergenic Intergenic -39978 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 325-522 chr7 156186960 156187217 + 2 NA Intergenic L2b|LINE|L2 224456 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 671-78 chr5 69145823 69146262 + 2 NA Intergenic L1M1|LINE|L1 -14766 NR_145732 109616958 NR_145732 ENSG00000280894 SNORA50D - small nucleolar RNA, H/ACA box 50D snoRNA 114-59 chr8 5783855 5783930 + 2 NA Intergenic Intergenic 622656 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 301-8 chr1 89543964 89544256 + 2 NA intron (NM_001369819, intron 2 of 6) intron (NM_001369819, intron 2 of 6) 19272 NM_001369819 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 285-290 chr3 180130623 180130813 + 2 NA Intergenic Intergenic -93781 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 971-3 chr10 75258089 75258812 + 2 NA Intergenic AluSq2|SINE|Alu -22493 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 310-347 chr3 143561070 143561314 + 2 NA intron (NM_173653, intron 8 of 15) intron (NM_173653, intron 8 of 15) 218946 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 383-369 chr8 33183412 33183650 + 2 NA Intergenic Intergenic 289615 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 124-34 chr2 35275073 35275135 + 2 NA Intergenic L1M5|LINE|L1 -196301 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 213-238 chr5 111997565 111997760 + 2 NA intron (NR_046678, intron 3 of 3) MamGypsy2-I|LTR|Gypsy -20730 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 233-186 chr2 157421938 157422120 + 2 NA intron (NM_004288, intron 6 of 7) intron (NM_004288, intron 6 of 7) 22060 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 160-5 chr1 112184893 112185019 + 2 NA Intergenic L2a|LINE|L2 194420 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 265-263 chr4 49050787 49051020 + 2 NA intron (NM_001286791, intron 15 of 15) intron (NM_001286791, intron 15 of 15) 64261 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 329-168 chr14 81574637 81574868 + 2 NA Intergenic Intergenic -40891 NM_001244984 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 218-291 chr6 115102352 115102471 + 2 NA Intergenic Intergenic 541424 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 360-95 chr12 82034380 82034636 + 2 NA Intergenic Intergenic 80789 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 509-242 chr8 6691413 6691853 + 2 NA intron (NR_125386, intron 1 of 4) L1PREC2|LINE|L1 16576 NR_125386 100507530 Hs.490892 NR_125386 MCPH1-AS1 - MCPH1 antisense RNA 1 ncRNA 407-350 chrX 19241259 19241584 + 2 NA Intergenic Intergenic -102472 NM_001173456 5160 Hs.530331 NM_000284 ENSG00000131828 PDHA1 PDHA|PDHAD|PDHCE1A|PHE1A pyruvate dehydrogenase E1 alpha 1 subunit protein-coding 222-387 chr9 24773758 24773908 + 2 NA Intergenic Intergenic -227936 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 278-323 chr4 167563623 167563825 + 2 NA Intergenic Intergenic -329134 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 141-29 chr15 79823900 79823994 + 2 NA Intergenic Intergenic 73050 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 381-78 chr11 105657608 105657933 + 2 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 47064 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 314-167 chr14 51412129 51412408 + 2 NA Intergenic L1M5|LINE|L1 -15133 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 273-232 chr2 124020520 124020757 + 2 NA intron (NR_147976, intron 1 of 2) intron (NR_147976, intron 1 of 2) 4536 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 286-456 chr8 89909302 89909522 + 2 NA intron (NM_001126111, intron 1 of 5) intron (NM_001126111, intron 1 of 5) 6842 NM_001126111 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 193-139 chr3 44702931 44703098 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -9629 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 219-371 chr8 135064960 135065156 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -169073 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 237-401 chr8 144935508 144935691 + 2 NA intron (NM_006958, intron 2 of 2) intron (NM_006958, intron 2 of 2) 15281 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 364-373 chr6 10035181 10035516 + 2 NA Intergenic Intergenic -369154 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 451-64 chr14 57983205 57983606 + 2 NA Intergenic LTR45B|LTR|ERV1 -117313 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 266-71 chr11 103889108 103889314 + 2 NA Intergenic MIR|SINE|MIR 39305 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 369-228 chr2 204195987 204196206 + 2 NA Intergenic Intergenic 259348 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 255-211 chr2 172291102 172291331 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -136120 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 338-565 chr8 134219461 134219749 + 2 NA Intergenic L1PB3|LINE|L1 333109 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 247-175 chr19 12575830 12576003 + 2 NA TTS (NM_020714) TTS (NM_020714) -24434 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 491-177 chr3 191185145 191185485 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -13926 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 702-22 chr14 56763200 56763734 + 2 NA Intergenic AluSz|SINE|Alu 42200 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 148-47 chr20 15943806 15943903 + 2 NA intron (NM_001351663, intron 12 of 17) intron (NM_001351663, intron 12 of 17) -20540 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 300-160 chr17 79811202 79811489 + 2 NA Intergenic CpG -12107 NR_146504 105371919 NR_146504 ENSG00000262772 LINC01977 - long intergenic non-protein coding RNA 1977 ncRNA 291-237 chr2 171581336 171581538 + 2 NA Intergenic L1PREC2|LINE|L1 58963 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 263-105 chr14 50692191 50692407 + 2 NA Intergenic L1MA1|LINE|L1 -23993 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 495-226 chr6 155654459 155654932 + 2 NA Intergenic L1MEd|LINE|L1 139851 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 352-261 chr2 181366147 181366415 + 2 NA intron (NR_130784, intron 4 of 4) MLT1F|LTR|ERVL-MaLR -60629 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 309-98 chr12 17969133 17969438 + 2 NA Intergenic L1MC3|LINE|L1 120908 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 215-316 chr8 108546994 108547196 + 2 NA Intergenic L1MD2|LINE|L1 103471 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 563-4 chr1 74353428 74353808 + 2 NA intron (NM_015978, intron 10 of 24) Zaphod3|DNA|hAT-Tip100 118231 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 340-409 chr4 96810211 96810413 + 2 NA intron (NR_147149, intron 3 of 3) L1PA12|LINE|L1 499609 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 554-39 chr10 118858304 118858686 + 2 NA Intergenic MIR3|SINE|MIR -103525 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 500-223 chr5 42216427 42216804 + 2 NA Intergenic L1MEc|LINE|L1 -41270 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 541-173 chr4 109484741 109485106 + 2 NA intron (NM_001300813, intron 5 of 24) intron (NM_001300813, intron 5 of 24) -3775 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 196-75 chr14 66285680 66285803 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -200630 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 404-171 chr2 122714778 122714993 + 2 NA Intergenic L1PA12|LINE|L1 358596 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 370-388 chr6 23409560 23409786 + 2 NA Intergenic Intergenic -691749 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 330-263 chr2 59841363 59841666 + 2 NA Intergenic Intergenic 541522 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 326-162 chr15 37881496 37881729 + 2 NA Intergenic Intergenic -52995 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 207-148 chr2 125700867 125701051 + 2 NA Intergenic L1MC5|LINE|L1 417026 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 432-169 chr3 11064731 11064993 + 2 NA Intergenic LOR1b|LTR|ERV1 -45638 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 473-160 chr21 18833147 18833421 + 2 NA Intergenic Intergenic -73472 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 345-291 chr2 155490348 155490644 + 2 NA Intergenic Intergenic 764435 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 328-96 chr12 7741388 7741562 + 2 NA exon (NM_130441, exon 4 of 7) exon (NM_130441, exon 4 of 7) 5900 NM_001371390 377-116 chr14 44815661 44815997 + 2 NA Intergenic Intergenic -16703 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 130-80 chr7 25986522 25986603 + 2 NA Intergenic Intergenic -36576 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 500-7 chr1 88800777 88801193 + 2 NA intron (NM_001320707, intron 8 of 20) intron (NM_001320707, intron 8 of 20) 90582 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 230-223 chr22 35964828 35965001 + 2 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) -3284 NM_001349989 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 477-42 chr10 75313782 75314147 + 2 NA intron (NR_038226, intron 2 of 3) L1M1|LINE|L1 17581 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 255-303 chr4 129999926 130000094 + 2 NA Intergenic L1M1|LINE|L1 228391 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 278-195 chr19 58134430 58134639 + 2 NA intron (NM_024620, intron 3 of 3) intron (NM_024620, intron 3 of 3) -16108 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 328-46 chr10 15445589 15445828 + 2 NA Intergenic AluSp|SINE|Alu -74419 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 419-288 chr8 63748007 63748309 + 2 NA Intergenic L3|LINE|CR1 -21272 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 243-195 chr2 29644551 29644787 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -169292 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 385-265 chr4 44453888 44454187 + 2 NA Intergenic Intergenic -5228 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 333-58 chr10 54225212 54225450 + 2 NA intron (NM_001354411, intron 9 of 34) intron (NM_001354411, intron 9 of 34) -260899 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 363-219 chr2 100703052 100703363 + 2 NA Intergenic Intergenic 99468 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 240-412 chr8 77321808 77321956 + 2 NA Intergenic Intergenic -128815 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 293-396 chr7 31111608 31111804 + 2 NA TTS (NM_001199635) TTS (NM_001199635) 59245 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 382-298 chr4 63685363 63685719 + 2 NA Intergenic L1M5|LINE|L1 723909 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 232-148 chr19 7124637 7124762 + 2 NA intron (NM_001079817, intron 16 of 20) L2a|LINE|L2 54996 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 207-228 chr4 157431661 157431862 + 2 NA Intergenic Intergenic -140729 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 331-454 chr6 55942697 55943003 + 2 NA Intergenic Intergenic -67260 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 567-197 chr8 141870834 141871291 + 2 NA Intergenic Intergenic -84749 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 247-374 chr7 15652054 15652210 + 2 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) -15815 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 326-490 chr7 37961876 37962074 + 2 NA Intergenic L1M5|LINE|L1 40656 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 232-407 chrX 12621244 12621445 + 2 NA intron (NM_001368400, intron 3 of 15) L1M3a|LINE|L1 122664 NM_001368400 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 268-392 chr8 50629263 50629419 + 2 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 465210 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 383-372 chr8 55554851 55555125 + 2 NA Intergenic L2b|LINE|L2 -34010 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 496-300 chr8 139801587 139802075 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -98708 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 354-209 chr2 58058746 58059004 + 2 NA intron (NM_001288836, intron 3 of 13) MIRb|SINE|MIR 12163 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 581-18 chr10 73979469 73980022 + 2 NA Intergenic LTR16B2|LTR|ERVL -18369 NM_014000 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 314-301 chr2 124182711 124182893 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 157515 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 373-34 chr1 228856357 228856602 + 2 NA Intergenic L1MB3|LINE|L1 121000 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 294-287 chr3 30104771 30104987 + 2 NA Intergenic MER53|DNA|hAT -170723 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 333-519 chr6 155341837 155342100 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -27484 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 493-208 chr3 102023353 102023839 + 2 NA Intergenic L2c|LINE|L2 82737 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 273-11 chr1 75093310 75093555 + 2 NA Intergenic Intergenic -35002 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 132-54 chr4 61630969 61631075 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 428850 NM_001371342 560-120 chr3 189321644 189322065 + 2 NA 3' UTR (NM_198485, exon 6 of 6) 3' UTR (NM_198485, exon 6 of 6) -81260 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 313-13 chr1 85636868 85637142 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 56244 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 247-353 chr6 37272745 37272892 + 2 NA intron (NR_130108, intron 2 of 12) MLT1L|LTR|ERVL-MaLR -14663 NR_104443 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 412-258 chr5 63983279 63983524 + 2 NA Intergenic L2a|LINE|L2 -21109 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 318-385 chr4 28276970 28277263 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -542466 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 248-408 chr8 109557101 109557254 + 2 NA intron (NM_198120, intron 5 of 6) intron (NM_198120, intron 5 of 6) 16551 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 592-124 chr4 31700591 31701041 + 2 NA Intergenic Intergenic 194272 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 185-178 chr6 51218348 51218497 + 2 NA Intergenic Intergenic 399551 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 482-308 chrX 155080033 155080433 + 2 NA intron (NM_001018055, intron 5 of 10) intron (NM_001018055, intron 5 of 10) 8813 NM_024332 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 473-139 chr2 102392963 102393286 + 2 NA intron (NM_003855, intron 9 of 10) intron (NM_003855, intron 9 of 10) -25666 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 257-2 chr1 45437580 45437803 + 2 NA intron (NM_001320800, intron 1 of 9) L1MA4A|LINE|L1 53472 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 394-81 chr12 37413076 37413400 + 2 NA Intergenic ALR/Alpha|Satellite|centr -903536 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 230-163 chr2 15807525 15807676 + 2 NA Intergenic MER20|DNA|hAT-Charlie -112799 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 482-110 chr18 64602731 64603062 + 2 NA Intergenic Intergenic -342841 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 305-483 chr6 132512220 132512441 + 2 NA intron (NM_001326579, intron 1 of 9) intron (NM_001326579, intron 1 of 9) 453 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 378-298 chr4 27469027 27469284 + 2 NA Intergenic MER21A|LTR|ERVL 251676 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 212-177 chr2 180803018 180803185 + 2 NA intron (NR_104324, intron 3 of 4) intron (NR_104324, intron 3 of 4) 110997 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 304-303 chr20 56078577 56078796 + 2 NA Intergenic Intergenic -73167 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 352-285 chr20 44705300 44705524 + 2 NA Intergenic L2c|LINE|L2 -9432 NM_003881 8839 Hs.592145 NM_003881 ENSG00000064205 CCN5 CT58|CTGF-L|WISP2 cellular communication network factor 5 protein-coding 492-207 chr5 46069263 46069739 + 2 NA Intergenic ALR/Alpha|Satellite|centr -373121 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 548-85 chr16 65406411 65406813 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 169688 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 275-49 chr10 70765590 70765737 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 16910 NR_134534 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 161-30 chr15 25017591 25017748 + 2 NA intron (NR_146177, intron 20 of 147) intron (NR_146177, intron 20 of 147) -14204 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 243-229 chr2 123077984 123078217 + 2 NA Intergenic Intergenic -4619 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 282-471 chr8 134541826 134542038 + 2 NA intron (NM_020863, intron 11 of 15) intron (NM_020863, intron 11 of 15) -56139 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 313-523 chr8 78832707 78832951 + 2 NA Intergenic L1MEg|LINE|L1 -4700 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 674-3 chr1 96901621 96902089 + 2 NA Intergenic LTR10B|LTR|ERV1 179217 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 405-198 chr3 31993802 31994138 + 2 NA Intergenic L1ME1|LINE|L1 -12120 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 530-237 chr7 86985607 86985948 + 2 NA intron (NM_001142749, intron 1 of 21) L1PA4|LINE|L1 -19878 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 395-266 chr5 31166691 31166945 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -26868 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 113-31 chr2 139860515 139860599 + 2 NA Intergenic L1MB2|LINE|L1 726128 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 295-303 chr3 110669124 110669300 + 2 NA Intergenic AluSz6|SINE|Alu 400747 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 323-358 chr4 30102240 30102548 + 2 NA Intergenic Intergenic -617975 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 268-159 chr18 10310538 10310702 + 2 NA Intergenic Intergenic 103750 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 371-141 chr17 3346446 3346665 + 2 NA Intergenic L1MA2|LINE|L1 36310 NR_024128 390756 Hs.632245 NM_001005334 ENSG00000180068 OR3A4P OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P olfactory receptor family 3 subfamily A member 4 pseudogene pseudo 303-314 chr4 54909137 54909429 + 2 NA Intergenic Intergenic 216312 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 414-159 chr2 115263431 115263785 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -45629 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 169-15 chr11 24317880 24317984 + 2 NA Intergenic L1M1|LINE|L1 -179121 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 238-247 chr3 140236540 140236705 + 2 NA intron (NM_022131, intron 2 of 16) L1MEc|LINE|L1 272167 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 719-42 chr2 218355894 218356424 + 2 NA promoter-TSS (NM_198559) promoter-TSS (NM_198559) -698 NM_198559 375307 Hs.645453 NM_198559 ENSG00000158428 CATIP C2orf62 ciliogenesis associated TTC17 interacting protein protein-coding 559-23 chr11 48650596 48650984 + 2 NA Intergenic ALR/Alpha|Satellite|centr 161997 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 509-170 chr4 32750777 32751122 + 2 NA Intergenic Intergenic 399911 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 387-17 chr1 187280950 187281260 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -162523 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 150-36 chr14 54295400 54295502 + 2 NA Intergenic Intergenic -101417 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 367-473 chr9 27983985 27984194 + 2 NA intron (NM_001354574, intron 5 of 5) LTR103_Mam|LTR|ERV1? -410223 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 269-84 chr12 23690243 23690452 + 2 NA intron (NM_152989, intron 9 of 17) intron (NM_152989, intron 9 of 17) -105761 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 251-314 chr5 122284672 122284916 + 2 NA Intergenic L1PB1|LINE|L1 -26897 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 328-75 chr11 11099878 11100170 + 2 NA Intergenic LTR49-int|LTR|ERV1 241807 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 306-481 chr7 89637399 89637701 + 2 NA Intergenic L1ME1|LINE|L1 -481850 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 328-481 chr5 160870693 160870896 + 2 NA Intergenic L1MC1|LINE|L1 -18583 NM_001366652 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 528-217 chr5 178704376 178704775 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 26084 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 241-220 chr20 46720096 46720314 + 2 NA intron (NM_030777, intron 1 of 4) intron (NM_030777, intron 1 of 4) 10556 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 299-118 chr13 35447180 35447434 + 2 NA intron (NM_015678, intron 39 of 57) (AACAAT)n|Simple_repeat|Simple_repeat 29382 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 155-11 chr1 114731658 114731795 + 2 NA intron (NM_001007553, intron 10 of 19) intron (NM_001007553, intron 10 of 19) -14955 NM_002524 4893 Hs.486502 NM_002524 ENSG00000213281 NRAS ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6 NRAS proto-oncogene, GTPase protein-coding 453-11 chr1 161028320 161028611 + 2 NA Intergenic AluJr|SINE|Alu -7313 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 147-50 chr2 228884543 228884677 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -273215 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 429-270 chr7 29902544 29902858 + 2 NA intron (NM_001080529, intron 7 of 8) AluSz6|SINE|Alu 87100 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 335-331 chr22 49603374 49603629 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 54018 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 416-33 chr10 33588574 33588843 + 2 NA Intergenic L1ME1|LINE|L1 183972 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 243-50 chr10 75909782 75909975 + 2 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 127117 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 256-384 chr7 35458481 35458652 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 144711 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 681-71 chr6 18704862 18705384 + 2 NA intron (NR_149116, intron 6 of 7) L1MA6|LINE|L1 133339 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 502-196 chr4 36030151 36030460 + 2 NA intron (NR_146893, intron 35 of 36) L1MC4|LINE|L1 213634 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 161-135 chr8 139637277 139637421 + 2 NA intron (NR_104210, intron 1 of 3) L1M4|LINE|L1 65774 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 331-138 chr13 78475799 78476123 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -120161 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 319-319 chr3 2690425 2690693 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -201656 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 494-250 chr6 92739038 92739394 + 2 NA Intergenic L1ME3E|LINE|L1 680343 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 349-215 chr18 38132033 38132270 + 2 NA Intergenic (CAA)n|Simple_repeat|Simple_repeat 475016 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 328-270 chr2 104222999 104223271 + 2 NA Intergenic Intergenic 185197 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 393-3 chr1 22937378 22937745 + 2 NA Intergenic AluJb|SINE|Alu 35305 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 309-325 chr22 22038138 22038400 + 2 NA intron (NR_135291, intron 1 of 6) intron (NR_135291, intron 1 of 6) 5665 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 330-554 chr9 80711834 80712135 + 2 NA Intergenic Intergenic 736961 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 759-43 chr20 22035139 22035686 + 2 NA Intergenic Intergenic -18678 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 292-99 chr12 33254756 33255029 + 2 NA Intergenic MER84|LTR|ERV1 184927 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 316-573 chr8 142335254 142335458 + 2 NA intron (NM_001291931, intron 2 of 10) intron (NM_001291931, intron 2 of 10) 67826 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 705-59 chr20 2410465 2411013 + 2 NA intron (NM_198994, intron 9 of 12) MER21C|LTR|ERVL 29838 NM_198994 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 316-437 chr5 44763082 44763317 + 2 NA intron (NR_109865, intron 1 of 2) intron (NR_109865, intron 1 of 2) 45594 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 540-53 chr12 55558575 55558890 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 7505 NM_001005494 341418 Hs.495021 NM_001005494 ENSG00000179626 OR6C4 OR12-10 olfactory receptor family 6 subfamily C member 4 protein-coding 401-303 chr7 87449243 87449542 + 2 NA intron (NM_018849, intron 8 of 27) Charlie4a|DNA|hAT-Charlie 26288 NM_018849 5244 Hs.654403 NM_000443 ENSG00000005471 ABCB4 ABC21|GBD1|ICP3|MDR2|MDR2/3|MDR3|PFIC-3|PGY3 ATP binding cassette subfamily B member 4 protein-coding 493-137 chr2 33643093 33643420 + 2 NA Intergenic L1M4b|LINE|L1 -43894 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 119-36 chr2 194414250 194414309 + 2 NA intron (NR_110222, intron 4 of 5) intron (NR_110222, intron 4 of 5) 70010 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 548-182 chr5 67068817 67069289 + 2 NA intron (NM_001297651, intron 2 of 25) intron (NM_001297651, intron 2 of 25) 64398 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 300-63 chr11 25708342 25708545 + 2 NA Intergenic Intergenic -480680 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 251-342 chr6 86752568 86752787 + 2 NA Intergenic Intergenic -184851 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 208-32 chr10 125430604 125430803 + 2 NA Intergenic Intergenic -143668 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 495-217 chr6 63173121 63173569 + 2 NA Intergenic LTR80A|LTR|ERVL 146632 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 218-135 chr18 36396755 36396915 + 2 NA intron (NM_001281740, intron 3 of 28) HAL1M8|LINE|L1 99122 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 312-170 chr15 88692873 88693043 + 2 NA Intergenic AluSz6|SINE|Alu 53942 NM_001303236 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 298-302 chr3 101046070 101046309 + 2 NA Intergenic MIR3|SINE|MIR -52699 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 320-42 chr1 239595233 239595454 + 2 NA intron (NM_001347716, intron 3 of 7) MER2|DNA|TcMar-Tigger -33730 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 327-457 chr7 51354463 51354719 + 2 NA Intergenic L1ME3|LINE|L1 -37730 NM_001346444 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 289-387 chr5 120714266 120714468 + 2 NA Intergenic Intergenic 182903 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 232-119 chr16 20081391 20081554 + 2 NA Intergenic L1ME2z|LINE|L1 -7694 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 341-159 chr15 26909397 26909689 + 2 NA intron (NM_001165037, intron 6 of 10) MLT1D|LTR|ERVL-MaLR 42417 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 144-63 chr3 166560764 166560880 + 2 NA Intergenic L1PA17|LINE|L1 -337861 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 348-446 chr6 47984619 47984848 + 2 NA intron (NM_207499, intron 2 of 2) (AATATT)n|Simple_repeat|Simple_repeat 83956 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 206-68 chr14 69157338 69157493 + 2 NA Intergenic L1MB7|LINE|L1 -4218 NM_001284206 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 653-110 chr7 46420473 46421068 + 2 NA Intergenic Intergenic 276352 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 329-512 chr6 149359779 149359977 + 2 NA intron (NM_001369506, intron 2 of 7) L1MEd|LINE|L1 -40384 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 313-32 chr1 222076692 222076949 + 2 NA Intergenic Intergenic -98300 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 269-216 chr2 203770869 203771038 + 2 NA Intergenic AluSq2|SINE|Alu 64314 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 233-160 chr2 30067830 30068044 + 2 NA Intergenic MIRc|SINE|MIR -79070 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 240-43 chr10 39059107 39059290 + 2 NA Intergenic ALR/Alpha|Satellite|centr 362602 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 522-197 chr4 188963576 188963937 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 187099 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 329-466 chr5 105860583 105860875 + 2 NA Intergenic L2c|LINE|L2 761255 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 315-16 chr1 89503093 89503351 + 2 NA Intergenic Intergenic -21607 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 347-197 chr2 9223676 9223993 + 2 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 17022 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 321-198 chr15 79421112 79421333 + 2 NA Intergenic MER5C|DNA|hAT-Charlie -11294 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 366-49 chr10 58521812 58522140 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 9104 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 247-287 chr4 31713861 31714047 + 2 NA Intergenic Intergenic 207410 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 362-122 chr12 78262616 78262870 + 2 NA Intergenic Intergenic 97003 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 180-103 chr22 47979122 47979292 + 2 NA Intergenic L1ME3A|LINE|L1 -295157 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 194-45 chr13 38942757 38942923 + 2 NA Intergenic Intergenic 47991 NM_145286 161003 Hs.327794 NM_145286 ENSG00000133115 STOML3 Epb7.2l|SRO stomatin like 3 protein-coding 342-467 chr6 133805092 133805425 + 2 NA intron (NR_109982, intron 2 of 8) L2a|LINE|L2 -15889 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 513-237 chr6 2482821 2483174 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy -151503 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 516-41 chr11 116392827 116393159 + 2 NA Intergenic L1MB8|LINE|L1 -246429 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 248-42 chr10 64946536 64946775 + 2 NA Intergenic Intergenic -22137 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 386-138 chr18 5218412 5218683 + 2 NA Intergenic Intergenic 19482 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 725-14 chr11 31350507 31350981 + 2 NA intron (NM_181807, intron 1 of 8) intron (NM_181807, intron 1 of 8) 18995 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 854-16 chr14 82963704 82964289 + 2 NA Intergenic Intergenic 321364 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 323-496 chr7 46976687 46976913 + 2 NA Intergenic Intergenic -279678 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 134-29 chr14 49861235 49861363 + 2 NA Intergenic Intergenic 1550 NR_027260 378706 NR_027260 ENSG00000274012 RN7SL2 7L1C|7L30.1|7SL1c|RNSRP2 RNA component of signal recognition particle 7SL2 scRNA 623-30 chr12 41868712 41869056 + 2 NA Intergenic Intergenic 104695 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 384-38 chr10 57123852 57124230 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 180518 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 211-282 chr7 109826728 109826902 + 2 NA Intergenic L1MDb|LINE|L1 133398 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 574-156 chr6 155521953 155522496 + 2 NA intron (NR_134597, intron 2 of 2) intron (NR_134597, intron 2 of 2) 7380 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 205-274 chr8 87200515 87200707 + 2 NA intron (NM_173538, intron 4 of 10) L1M4|LINE|L1 334196 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 371-124 chr16 8334109 8334313 + 2 NA Intergenic Intergenic 255627 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 379-159 chr2 65157040 65157330 + 2 NA Intergenic Intergenic -26884 NM_015543 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 261-156 chr18 12581826 12581984 + 2 NA intron (NM_020148, intron 2 of 15) intron (NM_020148, intron 2 of 15) 74827 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 312-558 chrX 45960659 45960938 + 2 NA Intergenic L1PA13|LINE|L1 -109308 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 436-185 chr3 84938533 84938776 + 2 NA Intergenic Intergenic -20335 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 457-19 chr1 214844940 214845261 + 2 NA Intergenic L2b|LINE|L2 -160442 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 479-34 chr11 21266325 21266693 + 2 NA intron (NM_201551, intron 14 of 18) L2|LINE|L2 596923 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 343-386 chr4 57124804 57125032 + 2 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -14533 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 339-309 chr20 12147751 12147999 + 2 NA Intergenic L1PA11|LINE|L1 229982 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 350-69 chr11 30512264 30512511 + 2 NA intron (NM_001584, intron 2 of 5) intron (NM_001584, intron 2 of 5) 68106 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 335-425 chr5 54635013 54635330 + 2 NA Intergenic Intergenic 68153 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 211-323 chr9 31714850 31715052 + 2 NA Intergenic L2a|LINE|L2 -333461 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 319-306 chr21 31762715 31762923 + 2 NA Intergenic Intergenic -30701 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 392-221 chr4 18914966 18915213 + 2 NA Intergenic Intergenic -893214 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 186-134 chr6 23666771 23666864 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -459398 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 234-85 chr13 60413078 60413199 + 2 NA intron (NM_001146070, intron 1 of 13) Charlie13b|DNA|hAT-Charlie 15918 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 256-247 chr3 6126140 6126381 + 2 NA Intergenic L1MA5A|LINE|L1 679189 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 415-56 chr12 22763355 22763600 + 2 NA Intergenic Intergenic 138306 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 343-392 chr4 64227726 64228031 + 2 NA Intergenic Intergenic 181572 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 119-32 chr2 80546014 80546112 + 2 NA exon (NM_001282597, exon 11 of 19) exon (NM_001282597, exon 11 of 19) 232684 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 290-335 chr5 33399896 33400092 + 2 NA Intergenic Intergenic -40702 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 345-55 chr10 37263258 37263434 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -45840 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 384-312 chr6 22051849 22052207 + 2 NA intron (NR_015410, intron 7 of 11) THE1B|LTR|ERVL-MaLR 95165 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 199-74 chr16 73169064 73169190 + 2 NA Intergenic Intergenic -24680 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 576-71 chr18 5747398 5747917 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -1162 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 118-38 chr4 109049740 109049846 + 2 NA intron (NM_198721, intron 4 of 36) intron (NM_198721, intron 4 of 36) 252865 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 240-327 chr4 95244757 95244926 + 2 NA intron (NM_003728, intron 6 of 15) intron (NM_003728, intron 6 of 15) 153350 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 217-84 chr12 24831850 24831997 + 2 NA intron (NM_001178091, intron 8 of 9) intron (NM_001178091, intron 8 of 9) 70299 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 275-87 chr12 81600487 81600708 + 2 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) -2226 NM_001220477 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 376-116 chr15 54954812 54955028 + 2 NA Intergenic Intergenic -101827 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 376-352 chr6 109992387 109992703 + 2 NA Intergenic Intergenic 14234 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 278-146 chr16 59381256 59381447 + 2 NA Intergenic LTR40a|LTR|ERVL 373840 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 258-78 chr12 3675487 3675707 + 2 NA intron (NM_001144958, intron 6 of 19) intron (NM_001144958, intron 6 of 19) 77512 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 277-255 chr3 77807431 77807681 + 2 NA Intergenic Intergenic 241407 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 286-94 chr12 67487488 67487712 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -32482 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LINC02408 - long intergenic non-protein coding RNA 2408 ncRNA 319-296 chr20 55196935 55197109 + 2 NA Intergenic Intergenic -226021 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 318-451 chr5 97392074 97392357 + 2 NA Intergenic MER66-int|LTR|ERV1 -112481 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 255-208 chr2 137652270 137652466 + 2 NA intron (NM_001316349, intron 21 of 27) L1MA4|LINE|L1 275564 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 435-48 chr11 25373639 25374062 + 2 NA Intergenic Intergenic -815273 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 354-174 chr17 70986042 70986348 + 2 NA Intergenic MER50|LTR|ERV1 215984 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 321-278 chr2 31687606 31687769 + 2 NA Intergenic LTR9A1|LTR|ERV1 -106749 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 446-109 chr15 55041383 55041697 + 2 NA Intergenic L1MA4A|LINE|L1 -15207 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 603-114 chr3 188417636 188418130 + 2 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 150783 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 312-544 chr9 35223074 35223272 + 2 NA intron (NM_006377, intron 1 of 38) L1MA4A|LINE|L1 61164 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 314-251 chr19 11778990 11779150 + 2 NA intron (NM_152355, intron 3 of 3) AluJo|SINE|Alu 12070 NM_152355 126068 Hs.675132 NM_152355 ENSG00000197044 ZNF441 - zinc finger protein 441 protein-coding 279-138 chr17 60224498 60224750 + 2 NA intron (NM_032582, intron 13 of 33) AluJr4|SINE|Alu 7021 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 575-151 chr5 82835540 82835895 + 2 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -4438 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 346-252 chr2 119451052 119451301 + 2 NA intron (NM_002980, intron 9 of 12) intron (NM_002980, intron 9 of 12) 19322 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 589-74 chr2 128891898 128892366 + 2 NA Intergenic L1MEg|LINE|L1 27532 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 533-244 chr9 74160628 74161017 + 2 NA Intergenic Intergenic -210709 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 283-75 chr11 24266944 24267125 + 2 NA Intergenic Intergenic -230019 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 437-101 chr16 86257953 86258257 + 2 NA intron (NR_104139, intron 3 of 5) intron (NR_104139, intron 3 of 5) 28142 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 360-99 chr12 118539078 118539322 + 2 NA Intergenic Intergenic 162645 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 309-296 chr20 11341487 11341762 + 2 NA Intergenic L3|LINE|CR1 -68241 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 236-261 chr4 92127129 92127350 + 2 NA Intergenic L2a|LINE|L2 150063 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 519-197 chr6 80425145 80425456 + 2 NA Intergenic Intergenic 318629 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 430-110 chr17 6122030 6122393 + 2 NA 3' UTR (NM_015253, exon 9 of 9) 3' UTR (NM_015253, exon 9 of 9) 51597 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 282-218 chr2 108091720 108091995 + 2 NA Intergenic L1MA1|LINE|L1 -39102 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 337-473 chr5 170368406 170368604 + 2 NA intron (NM_001034838, intron 1 of 7) AluSc|SINE|Alu 15018 NM_001034838 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 358-486 chr8 108813901 108814198 + 2 NA Intergenic L1PBa|LINE|L1 -26455 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 170-123 chr6 66611897 66612023 + 2 NA Intergenic Intergenic 824081 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 432-178 chr3 94504588 94504929 + 2 NA Intergenic MER6B|DNA|TcMar-Tigger -433505 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 310-559 chr9 106455505 106455792 + 2 NA Intergenic L1ME3A|LINE|L1 -145280 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 298-132 chr14 101510543 101510816 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 49743 NR_031649 100302145 NR_031649 ENSG00000283857 MIR1247 MIRN1247|hsa-mir-1247|mir-1247 microRNA 1247 ncRNA 321-520 chr7 22202756 22203002 + 2 NA intron (NM_012294, intron 9 of 25) intron (NM_012294, intron 9 of 25) -8069 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 716-8 chr10 7974916 7975490 + 2 NA intron (NM_031923, intron 3 of 6) intron (NM_031923, intron 3 of 6) 77288 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 405-179 chr20 19455599 19455853 + 2 NA intron (NM_020689, intron 2 of 16) LTR16C|LTR|ERVL -171130 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 290-449 chr8 87648062 87648264 + 2 NA Intergenic Intergenic 225852 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 256-416 chr8 77725717 77725940 + 2 NA Intergenic Intergenic 275131 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 196-5 chr1 49177342 49177489 + 2 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -79996 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 211-39 chr10 79578329 79578503 + 2 NA Intergenic L1MC1|LINE|L1 -18009 NM_001098668 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 476-224 chr5 84759066 84759381 + 2 NA Intergenic Intergenic -374343 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 439-33 chr10 59379813 59380183 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -16817 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 312-414 chr5 58526747 58526941 + 2 NA Intergenic Intergenic 3265 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 337-222 chr18 50146838 50147166 + 2 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) -20439 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 369-325 chr5 67880039 67880297 + 2 NA Intergenic Intergenic 86955 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 520-103 chr16 8878294 8878712 + 2 NA Intergenic Intergenic -9491 NM_001278260 23589 Hs.632184 NM_014316 ENSG00000153048 CARHSP1 CRHSP-24|CRHSP24|CSDC1 calcium regulated heat stable protein 1 protein-coding 494-54 chr12 107488748 107489164 + 2 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) -91918 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 507-32 chr10 56525070 56525435 + 2 NA Intergenic Intergenic -163979 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 291-14 chr1 106367335 106367594 + 2 NA Intergenic Intergenic -339211 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 180-144 chr5 155353952 155354099 + 2 NA Intergenic L1PA15|LINE|L1 340270 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 396-58 chr10 83278913 83279185 + 2 NA Intergenic L1MEf|LINE|L1 398040 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 298-169 chr17 65976238 65976414 + 2 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -149783 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 232-282 chr4 154886943 154887101 + 2 NA Intergenic Intergenic 105517 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 436-7 chr1 73314688 73315013 + 2 NA intron (NR_110676, intron 3 of 3) L1MEg|LINE|L1 8680 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 325-465 chr5 151852738 151853015 + 2 NA intron (NM_000171, intron 6 of 8) L1MA9|LINE|L1 71975 NM_001146040 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 595-154 chr7 89537676 89538224 + 2 NA Intergenic L1MC4|LINE|L1 -581450 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 471-183 chr4 26655996 26656385 + 2 NA intron (NM_001292054, intron 4 of 17) intron (NM_001292054, intron 4 of 17) 72106 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 588-155 chr8 71170946 71171368 + 2 NA Intergenic L2a|LINE|L2 185549 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 124-7 chr10 44896682 44896798 + 2 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -14576 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 348-403 chr5 44013364 44013601 + 2 NA Intergenic AluSq2|SINE|Alu -375250 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 351-147 chr15 76475722 76476047 + 2 NA intron (NR_148227, intron 24 of 32) L1ME4b|LINE|L1 -110763 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 321-422 chr4 70156616 70156885 + 2 NA intron (NM_214711, intron 2 of 4) intron (NM_214711, intron 2 of 4) 2513 NM_214711 401137 Hs.518795 NM_214711 ENSG00000187533 PRR27 C4orf40 proline rich 27 protein-coding 337-54 chr10 71532067 71532319 + 2 NA intron (NM_052836, intron 6 of 12) intron (NM_052836, intron 6 of 12) -20273 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 309-28 chr1 211200309 211200584 + 2 NA Intergenic Intergenic -58831 NR_146432 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 354-289 chr3 33507427 33507675 + 2 NA intron (NM_001365634, intron 34 of 35) AluJr|SINE|Alu -67146 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 318-134 chr12 21827587 21827800 + 2 NA intron (NM_005691, intron 29 of 37) intron (NM_005691, intron 29 of 37) -52987 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 216-26 chr1 193514299 193514470 + 2 NA Intergenic Intergenic 209639 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 147-60 chr3 95294418 95294526 + 2 NA Intergenic Intergenic 356209 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 306-192 chr17 51586897 51587179 + 2 NA Intergenic L1PREC2|LINE|L1 151611 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 425-319 chr8 132441619 132441843 + 2 NA intron (NM_004519, intron 1 of 14) L1PA13|LINE|L1 5531 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 326-532 chr8 84086068 84086233 + 2 NA Intergenic L1ME1|LINE|L1 -96637 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 372-79 chr11 84769418 84769715 + 2 NA intron (NM_001351274, intron 5 of 26) L1PA16|LINE|L1 -48624 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 315-182 chr17 3438104 3438308 + 2 NA Intergenic Intergenic -4365 NM_003554 8388 Hs.533931 NM_003554 ENSG00000127780 OR1E2 OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529 olfactory receptor family 1 subfamily E member 2 protein-coding 260-322 chr4 114710096 114710229 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 53403 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 205-270 chr8 62104571 62104704 + 2 NA Intergenic MER75|DNA|PiggyBac -144217 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 372-407 chr5 88631395 88631677 + 2 NA intron (NR_152235, intron 2 of 3) intron (NR_152235, intron 2 of 3) 35403 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 385-223 chr21 24057438 24057649 + 2 NA Intergenic L2|LINE|L2 263834 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 219-77 chr12 108084966 108085141 + 2 NA Intergenic L1M5|LINE|L1 -44235 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 382-78 chr12 79550020 79550228 + 2 NA Intergenic Intergenic 130867 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 491-284 chrX 28931651 28932095 + 2 NA intron (NM_014271, intron 2 of 10) AluY|SINE|Alu 344427 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 379-47 chr10 111717494 111717713 + 2 NA Intergenic L1PA15|LINE|L1 466162 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 260-88 chr11 110450800 110450953 + 2 NA intron (NM_004109, intron 2 of 3) intron (NM_004109, intron 2 of 3) 20928 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 285-155 chr17 71971223 71971403 + 2 NA Intergenic L2a|LINE|L2 54666 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 371-134 chr16 66688994 66689238 + 2 NA intron (NM_181521, intron 1 of 3) L1MD|LINE|L1 7627 NM_181521 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 226-290 chr5 112279963 112280142 + 2 NA intron (NM_001347887, intron 3 of 23) intron (NM_001347887, intron 3 of 23) 51769 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 497-165 chr22 19337779 19338202 + 2 NA intron (NM_003325, intron 24 of 24) AluSx1|SINE|Alu -46271 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 199-158 chr3 7576021 7576190 + 2 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) -40821 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 304-163 chr15 64036590 64036849 + 2 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 9766 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 487-160 chr2 231580836 231581155 + 2 NA Intergenic Intergenic -11869 NM_152614 165100 Hs.98104 NM_152614 ENSG00000177673 TEX44 C2orf57 testis expressed 44 protein-coding 506-77 chr13 90156269 90156642 + 2 NA Intergenic MLT2A2|LTR|ERVL -36738 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 372-91 chr11 114570202 114570403 + 2 NA TTS (NM_001077639) TTS (NM_001077639) -10421 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 233-351 chr7 36427232 36427417 + 2 NA intron (NM_001284302, intron 19 of 22) intron (NM_001284302, intron 19 of 22) -36967 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 235-22 chr1 188196168 188196315 + 2 NA Intergenic Intergenic 752613 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 378-22 chr1 147195464 147195670 + 2 NA intron (NM_001144830, intron 5 of 6) intron (NM_001144830, intron 5 of 6) 17716 NR_002305 171423 Hs.658566 NR_002305 PDIA3P1 ERp60|GRP58P|PDIA3P protein disulfide isomerase family A member 3 pseudogene 1 pseudo 182-22 chr10 53611453 53611571 + 2 NA Intergenic L1MA4A|LINE|L1 -839812 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 320-91 chr11 81260370 81260584 + 2 NA Intergenic Intergenic -497674 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 457-197 chr5 60070540 60070937 + 2 NA intron (NM_001349243, intron 2 of 16) L1MB1|LINE|L1 -177012 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 368-230 chr2 52347440 52347745 + 2 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -23056 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 328-523 chr7 19909235 19909467 + 2 NA Intergenic L1MA3|LINE|L1 -135734 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 277-270 chr3 118896771 118897009 + 2 NA Intergenic L1MD2|LINE|L1 -46186 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 156-47 chr18 71368912 71369020 + 2 NA Intergenic Intergenic 209990 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 215-137 chr19 56886484 56886606 + 2 NA Intergenic MER31A|LTR|ERV1 45643 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 221-52 chr11 70759648 70759821 + 2 NA intron (NM_012309, intron 13 of 24) MER49|LTR|ERV1 -97893 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 363-155 chr15 58764510 58764839 + 2 NA Intergenic HAL1|LINE|L1 6300 NR_135474 101928725 Hs.572321 NR_135474 ENSG00000245975 LOC101928725 - uncharacterized LOC101928725 ncRNA 378-393 chr7 25965680 25965963 + 2 NA Intergenic Intergenic -15835 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 202-188 chr4 60246069 60246259 + 2 NA Intergenic Intergenic -676455 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 353-425 chr5 135410257 135410474 + 2 NA Intergenic L1ME3A|LINE|L1 -10478 NM_004893 9555 Hs.420272 NM_004893 ENSG00000113648 H2AFY H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 H2A histone family member Y protein-coding 250-39 chr10 48725777 48726010 + 2 NA exon (NM_001370154, exon 6 of 11) exon (NM_001370154, exon 6 of 11) 40430 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 302-290 chr3 95878613 95878857 + 2 NA Intergenic L3|LINE|CR1 -195542 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 317-146 chr14 56563269 56563477 + 2 NA Intergenic Intergenic -16425 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 278-27 chr10 7717228 7717495 + 2 NA intron (NM_002216, intron 5 of 20) intron (NM_002216, intron 5 of 20) 14045 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 504-86 chr15 94065264 94065669 + 2 NA intron (NR_120320, intron 2 of 8) MLT1J1|LTR|ERVL-MaLR 42472 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 235-374 chr8 130920381 130920593 + 2 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 120422 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 196-202 chr5 33053639 33053795 + 2 NA Intergenic L1M2a|LINE|L1 106274 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 220-96 chr12 119037903 119038065 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 56443 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 430-345 chrX 83959905 83960269 + 2 NA Intergenic L1PB2|LINE|L1 98941 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 381-408 chr9 93226924 93227225 + 2 NA intron (NM_006648, intron 1 of 28) L1ME2|LINE|L1 42144 NM_006648 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 260-98 chr12 25102340 25102530 + 2 NA intron (NR_159367, intron 16 of 19) intron (NR_159367, intron 16 of 19) 49729 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 323-589 chr9 113129943 113130260 + 2 NA Intergenic LTR79|LTR|ERVL 17205 NR_024366 286333 Hs.99052 NR_024366 ENSG00000231528 FAM225A C9orf109|LINC00256A|NCRNA00256A family with sequence similarity 225 member A ncRNA 268-324 chr5 133075123 133075265 + 2 NA intron (NM_002154, intron 6 of 18) intron (NM_002154, intron 6 of 18) 23181 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 275-219 chr20 1740944 1741164 + 2 NA Intergenic Intergenic 38692 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 872-35 chr4 53268572 53269030 + 2 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 97260 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 414-74 chr12 118685199 118685609 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 76275 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 256-49 chr10 74804285 74804504 + 2 NA Intergenic AluJr|SINE|Alu -20861 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 376-405 chr8 95868652 95868998 + 2 NA Intergenic L1MC3|LINE|L1 79523 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 337-297 chr2 215490086 215490325 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 36498 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 219-61 chr11 126860926 126861114 + 2 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -79726 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 572-5 chr1 98152122 98152614 + 2 NA Intergenic L1PA13|LINE|L1 -58343 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 265-93 chr13 82519042 82519277 + 2 NA Intergenic HAL1|LINE|L1 -1292176 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 325-460 chr5 125518576 125518822 + 2 NA intron (NR_109887, intron 2 of 3) L1ME2|LINE|L1 25438 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 325-17 chr1 103390393 103390634 + 2 NA Intergenic Intergenic 134998 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 280-310 chr5 16956198 16956471 + 2 NA Intergenic Intergenic -20046 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 381-153 chr18 58590275 58590565 + 2 NA intron (NM_052947, intron 3 of 12) intron (NM_052947, intron 3 of 12) -10200 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 521-57 chr12 2451054 2451443 + 2 NA intron (NM_199460, intron 4 of 49).2 intron (NM_199460, intron 4 of 49).2 181472 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 316-194 chr16 13429196 13429488 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -490815 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 385-361 chr7 88563303 88563581 + 2 NA Intergenic Intergenic -196258 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 217-213 chr22 22001700 22001875 + 2 NA intron (NR_135291, intron 4 of 6) L1MB3|LINE|L1 -19000 NM_001349850 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 370-12 chr1 112180603 112180945 + 2 NA Intergenic L2b|LINE|L2 190238 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 206-194 chr5 136234 136431 + 2 NA intron (NM_052909, intron 2 of 19) L1MB3|LINE|L1 44164 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 329-153 chr14 40464941 40465138 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -489672 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 226-236 chr3 143635979 143636130 + 2 NA intron (NM_173653, intron 6 of 15) L1M5|LINE|L1 212414 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 543-266 chr9 137703404 137703836 + 2 NA intron (NM_001354612, intron 1 of 8) MSTA-int|LTR|ERVL-MaLR 84615 NM_001354259 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 213-266 chr7 79807720 79807903 + 2 NA Intergenic L2a|LINE|L2 -327020 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 310-513 chr8 61843323 61843616 + 2 NA Intergenic MER4D1|LTR|ERV1 -46370 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 334-548 chr8 121263107 121263375 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -376105 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 354-404 chr6 93029434 93029740 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 389972 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 113-44 chr6 123936326 123936414 + 2 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 132505 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 492-217 chr5 118659832 118660160 + 2 NA Intergenic L1MA7|LINE|L1 63808 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 304-277 chr2 149925519 149925714 + 2 NA Intergenic Intergenic -66425 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 246-300 chr4 85753400 85753606 + 2 NA intron (NM_001025616, intron 3 of 9) intron (NM_001025616, intron 3 of 9) -25295 NM_001042669 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 1099-24 chr9 93836188 93837038 + 2 NA Intergenic L1MA4|LINE|L1 17256 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 224-199 chr3 62941101 62941288 + 2 NA Intergenic Intergenic -65778 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 214-249 chr4 155997647 155997759 + 2 NA Intergenic Intergenic -43837 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 280-2 chr1 12640041 12640254 + 2 NA Intergenic L1M4b|LINE|L1 -4400 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 758-7 chr10 25561201 25561760 + 2 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -90232 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 254-159 chr17 74136808 74137002 + 2 NA Intergenic L1MEc|LINE|L1 -66773 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 456-137 chr18 71861679 71861984 + 2 NA Intergenic Intergenic -79605 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 588-124 chr5 109144765 109145140 + 2 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 181417 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 309-512 chr7 62665361 62665575 + 2 NA Intergenic ALR/Alpha|Satellite|centr 638588 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 357-401 chr6 163851986 163852222 + 2 NA Intergenic L1MA10|LINE|L1 -180620 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 328-380 chr3 194833476 194833707 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -64882 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 119-56 chr7 115250221 115250320 + 2 NA Intergenic Intergenic -18915 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 403-264 chr6 38393671 38393994 + 2 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -87764 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 458-60 chr13 71530667 71530966 + 2 NA intron (NM_004392, intron 2 of 6) intron (NM_004392, intron 2 of 6) 336376 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 367-14 chr1 74093310 74093542 + 2 NA intron (NM_001105659, intron 5 of 7) MLT1J-int|LTR|ERVL-MaLR 104750 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 216-143 chr18 12789811 12789968 + 2 NA intron (NM_080423, intron 8 of 8) (AT)n|Simple_repeat|Simple_repeat -40467 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 216-67 chr11 115568542 115568721 + 2 NA Intergenic Intergenic -64216 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 258-269 chr3 139078573 139078742 + 2 NA Intergenic L1M8|LINE|L1 -25528 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 574-65 chr19 40064858 40065236 + 2 NA Intergenic L1M4b|LINE|L1 -8816 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 297-22 chr1 110726471 110726712 + 2 NA Intergenic L2c|LINE|L2 -51651 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 283-259 chr20 19003721 19003941 + 2 NA Intergenic Intergenic -173628 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 473-159 chr20 61759962 61760294 + 2 NA intron (NM_001252339, intron 2 of 14) intron (NM_001252339, intron 2 of 14) -40380 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 305-173 chr16 17769061 17769361 + 2 NA Intergenic Intergenic -298251 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 401-206 chr3 74113642 74113876 + 2 NA Intergenic Intergenic 304515 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 476-95 chr15 77398120 77398553 + 2 NA intron (NM_024776, intron 1 of 7) L1MA3|LINE|L1 21768 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 266-135 chr15 98466172 98466402 + 2 NA intron (NM_182562, intron 4 of 6) L1M4|LINE|L1 -45289 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 336-101 chr11 81024503 81024824 + 2 NA Intergenic Intergenic -261860 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 323-364 chr4 47202482 47202764 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 171056 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 151-20 chr12 83496515 83496599 + 2 NA Intergenic Intergenic 809402 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 322-2 chr1 11283799 11284022 + 2 NA intron (NM_001330350, intron 1 of 1) intron (NM_001330350, intron 1 of 1) 10712 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 354-213 chr2 72794934 72795255 + 2 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 30939 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 403-302 chr8 65046344 65046728 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR 133804 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 324-291 chr2 181220657 181220926 + 2 NA intron (NR_130784, intron 1 of 4) L1MA9|LINE|L1 84861 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 395-173 chr2 107347892 107348179 + 2 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 1490 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 269-442 chrX 117808118 117808296 + 2 NA Intergenic L1MA3|LINE|L1 165531 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 206-254 chr7 54890202 54890367 + 2 NA Intergenic L1MEd|LINE|L1 -128733 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 335-397 chr4 141467485 141467682 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -134966 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 787-49 chr8 18129929 18130672 + 2 NA Intergenic L1M1|LINE|L1 -40167 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 306-46 chr10 14318753 14318991 + 2 NA intron (NR_134578, intron 2 of 3) MLT1G|LTR|ERVL-MaLR 12012 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 437-278 chr8 113616368 113616592 + 2 NA Intergenic Intergenic -179541 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 220-20 chr1 159879015 159879133 + 2 NA intron (NM_012337, intron 8 of 11) intron (NM_012337, intron 8 of 11) -16417 NM_001013661 391123 Hs.647718 NM_001013661 ENSG00000243284 VSIG8 - V-set and immunoglobulin domain containing 8 protein-coding 228-69 chr12 44854724 44854867 + 2 NA intron (NM_006159, intron 3 of 20) intron (NM_006159, intron 3 of 20) 20866 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 597-119 chr6 93097492 93097930 + 2 NA Intergenic Intergenic 321848 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 679-92 chr6 35792381 35792924 + 2 NA intron (NM_001348773, intron 2 of 2) intron (NM_001348773, intron 2 of 2) 4671 NM_001252597 1208 Hs.1340 NM_001832 ENSG00000137392 CLPS - colipase protein-coding 182-155 chr6 121974078 121974175 + 2 NA Intergenic HAL1M8|LINE|L1 -425425 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 267-286 chr4 33493658 33493807 + 2 NA Intergenic L1MA6|LINE|L1 546161 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 436-299 chr8 59984303 59984678 + 2 NA Intergenic L1MA8|LINE|L1 296910 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 350-468 chr7 8527490 8527793 + 2 NA intron (NM_152745, intron 2 of 2) MamRep1527|LTR|LTR 94032 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 561-170 chr5 145936288 145936757 + 2 NA promoter-TSS (NM_152550) promoter-TSS (NM_152550) -56 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 338-439 chr5 79617159 79617367 + 2 NA intron (NM_001114393, intron 2 of 15) (AT)n|Simple_repeat|Simple_repeat 4822 NM_001349552 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 559-14 chr10 69558245 69558625 + 2 NA Intergenic Intergenic 14987 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 228-52 chr11 33188235 33188388 + 2 NA intron (NR_034027, intron 1 of 3) intron (NR_034027, intron 1 of 3) 26654 NR_034027 338739 Hs.423476 NR_034027 ENSG00000247151 CSTF3-DT CSTF3-AS1 CSTF3 divergent transcript ncRNA 358-326 chr4 32217237 32217452 + 2 NA Intergenic L3|LINE|CR1 -133694 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 326-367 chr4 30732795 30732983 + 2 NA TTS (NM_002589) TTS (NM_002589) 12520 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 599-89 chr3 110602777 110603374 + 2 NA Intergenic L1M4c|LINE|L1 466884 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 327-26 chr1 217346802 217347005 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -209201 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 401-8 chr1 106477674 106477897 + 2 NA Intergenic L1PB2|LINE|L1 -340454 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 590-41 chr13 96724706 96725153 + 2 NA intron (NM_153456, intron 1 of 1) L1ME1|LINE|L1 259243 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 386-362 chr8 126736472 126736711 + 2 NA Intergenic L2a|LINE|L2 -178113 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 507-205 chr5 108544205 108544660 + 2 NA Intergenic Intergenic -162334 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 353-80 chr11 38858649 38858945 + 2 NA Intergenic L1M1|LINE|L1 209939 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 318-223 chr18 66119098 66119324 + 2 NA Intergenic Intergenic 368199 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 320-485 chr6 62083840 62084125 + 2 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 202243 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 469-149 chr20 207561 207975 + 2 NA Intergenic L1M5|LINE|L1 -18057 NM_001037732 245939 Hs.516818 NM_001037732 ENSG00000185982 DEFB128 DEFB-28|DEFB28|hBD-28 defensin beta 128 protein-coding 191-151 chr4 79080212 79080358 + 2 NA intron (NR_038342, intron 2 of 5) L1MEf|LINE|L1 108537 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 541-63 chr14 41951022 41951554 + 2 NA Intergenic Intergenic 344432 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 339-376 chr3 102696422 102696724 + 2 NA Intergenic Intergenic 261558 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 637-89 chr4 163201835 163202445 + 2 NA Intergenic Intergenic -35250 NM_138386 92345 Hs.129095 NM_138386 ENSG00000145414 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 311-397 chr5 18790344 18790507 + 2 NA Intergenic Intergenic 983151 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 305-131 chr12 119096389 119096592 + 2 NA intron (NM_194286, intron 1 of 12) MIRb|SINE|MIR 79994 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 305-398 chr4 92783470 92783715 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 479193 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 367-452 chr8 84687124 84687475 + 2 NA intron (NM_001354308, intron 3 of 9) (ATTTC)n|Simple_repeat|Simple_repeat -18628 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 420-185 chr3 69441925 69442257 + 2 NA Intergenic Intergenic -56003 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 343-542 chr8 84359289 84359483 + 2 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -56098 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 495-254 chr8 90415226 90415550 + 2 NA Intergenic HERVL-int|LTR|ERVL 190675 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 397-147 chr2 29910842 29911079 + 2 NA intron (NM_004304, intron 1 of 28) L1MEf|LINE|L1 10626 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 155-31 chr11 115957551 115957655 + 2 NA Intergenic MIRc|SINE|MIR -197403 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 422-248 chr5 148664745 148665118 + 2 NA Intergenic Intergenic -10404 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 190-69 chr16 76480329 76480429 + 2 NA intron (NR_136210, intron 12 of 24) L1M5|LINE|L1 -154619 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 343-472 chr6 78394756 78395070 + 2 NA Intergenic Intergenic 144396 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 391-237 chr3 122581052 122581441 + 2 NA intron (NM_001113523, intron 1 of 11) L1MB2|LINE|L1 3596 NM_001308320 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 340-114 chr12 76982320 76982604 + 2 NA Intergenic L1MA9|LINE|L1 83107 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 387-166 chr2 40065587 40065826 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 148072 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 332-312 chr22 34828077 34828248 + 2 NA intron (NR_138042, intron 3 of 4) MLT1A|LTR|ERVL-MaLR 169754 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 316-239 chr19 52323784 52323965 + 2 NA 3' UTR (NM_001297624, exon 4 of 4) 3' UTR (NM_001297624, exon 4 of 4) -12369 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 379-93 chr14 63195641 63195948 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -8649 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 735-8 chr10 91373853 91374400 + 2 NA intron (NR_024467, intron 3 of 4) L1MEc|LINE|L1 -35109 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 233-120 chr16 68760298 68760474 + 2 NA intron (NM_001317185, intron 2 of 15) AluY|SINE|Alu 23094 NM_004360 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 338-239 chr2 58918 59088 + 2 NA Intergenic MER52-int|LTR|ERV1 -12498 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 422-138 chr2 111384 111799 + 2 NA Intergenic MIRb|SINE|MIR -65086 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 486-162 chr2 201582205 201582558 + 2 NA intron (NM_001168221, intron 4 of 15) intron (NM_001168221, intron 4 of 15) 36797 NM_001168217 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 357-470 chr8 142255119 142255395 + 2 NA intron (NM_001366901, intron 12 of 13) (CATCAC)n|Simple_repeat|Simple_repeat 56901 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 150-77 chr4 60058215 60058339 + 2 NA Intergenic Intergenic -864342 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 315-477 chr8 77260172 77260440 + 2 NA Intergenic Intergenic -190391 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 333-245 chr2 77385419 77385686 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 136824 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 354-10 chr1 71035015 71035347 + 2 NA intron (NM_198719, intron 1 of 3) intron (NM_198719, intron 1 of 3) -11325 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 215-277 chr6 50980509 50980717 + 2 NA Intergenic Intergenic 161742 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 535-106 chr17 51319383 51319761 + 2 NA intron (NR_110751, intron 5 of 5) LTR10A|LTR|ERV1 15590 NR_110751 101927274 Hs.591168 NR_110751 ENSG00000249383 LINC02071 - long intergenic non-protein coding RNA 2071 ncRNA 297-144 chr14 102650984 102651143 + 2 NA intron (NM_015156, intron 2 of 11) intron (NM_015156, intron 2 of 11) 58414 NM_015156 23186 Hs.510521 NM_015156 ENSG00000089902 RCOR1 COREST|RCOR REST corepressor 1 protein-coding 478-281 chr8 35062640 35062943 + 2 NA Intergenic L1M2a|LINE|L1 -172684 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 221-36 chr10 60148988 60149137 + 2 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -8046 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 236-15 chr1 105305162 105305330 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 313689 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 355-336 chr3 135874874 135875091 + 2 NA Intergenic L1MB1|LINE|L1 -90746 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 566-107 chr20 40615452 40615840 + 2 NA Intergenic L1ME2z|LINE|L1 73590 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 521-209 chr5 181001239 181001587 + 2 NA intron (NM_197975, intron 3 of 7) AluJr|SINE|Alu 12567 NM_197975 10917 Hs.225949 NM_006707 ENSG00000168903 BTNL3 BTN9.1|BTNLR butyrophilin like 3 protein-coding 836-33 chr2 188759413 188760167 + 2 NA intron (NR_161166, intron 1 of 1) L1MCc|LINE|L1 30333 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 366-210 chr2 107589539 107589791 + 2 NA Intergenic Intergenic 60246 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 219-298 chr5 148782874 148783023 + 2 NA Intergenic MIR3|SINE|MIR -43645 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 322-498 chr7 80467252 80467539 + 2 NA intron (NM_001102386, intron 5 of 7) intron (NM_001102386, intron 5 of 7) 44669 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 404-197 chr20 52455803 52456179 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -164847 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 315-301 chr3 6006443 6006622 + 2 NA Intergenic MIR|SINE|MIR -756277 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 475-109 chr18 4223066 4223355 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -41392 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 541-185 chr5 72596289 72596802 + 2 NA intron (NR_105007, intron 1 of 2) MER53|DNA|hAT 39468 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 314-495 chr6 39084265 39084473 + 2 NA intron (NR_136563, intron 12 of 13) intron (NR_136563, intron 12 of 13) 10055 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 320-143 chr14 38024790 38024950 + 2 NA Intergenic L1PA15|LINE|L1 -122746 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 390-219 chr21 31758967 31759288 + 2 NA Intergenic Intergenic -27009 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 323-99 chr11 114120021 114120194 + 2 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 56896 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 475-73 chr14 34341086 34341474 + 2 NA Intergenic MER4B|LTR|ERV1 120960 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 236-262 chr4 101448090 101448221 + 2 NA Intergenic Intergenic 100378 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 373-49 chr10 44379814 44380180 + 2 NA intron (NM_000609, intron 2 of 3) intron (NM_000609, intron 2 of 3) 5100 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 458-179 chr3 189425281 189425566 + 2 NA Intergenic Intergenic -171323 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 597-13 chr1 193892100 193892540 + 2 NA Intergenic Intergenic 587575 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 372-484 chr8 79046112 79046329 + 2 NA Intergenic L1MC|LINE|L1 208691 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 410-125 chr2 13663253 13663494 + 2 NA Intergenic L1MD|LINE|L1 -656360 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 298-501 chr9 81794055 81794271 + 2 NA Intergenic L2c|LINE|L2 104450 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 887-9 chr16 47795277 47795951 + 2 NA Intergenic L1MA9|LINE|L1 -62967 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 371-332 chr6 39138813 39139127 + 2 NA Intergenic Intergenic -23784 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 243-239 chr2 156253300 156253513 + 2 NA intron (NR_110250, intron 1 of 3) L1ME5|LINE|L1 1525 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 289-333 chr4 52182804 52183014 + 2 NA Intergenic L1MB7|LINE|L1 131605 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 348-463 chr6 105936828 105937052 + 2 NA Intergenic MIRc|SINE|MIR -149396 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 381-360 chr7 79919762 79920130 + 2 NA Intergenic AluSx|SINE|Alu -214885 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 222-186 chr2 129131468 129131684 + 2 NA Intergenic LOR1-int|LTR|ERV1 142315 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 341-469 chr6 130677628 130677827 + 2 NA Intergenic HAL1ME|LINE|L1 -149678 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 355-400 chr5 46166781 46166987 + 2 NA Intergenic ALR/Alpha|Satellite|centr -470504 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 306-349 chr4 35630740 35631001 + 2 NA Intergenic Intergenic 613069 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 271-283 chr3 164027587 164027792 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 143867 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 355-291 chr21 27152996 27153179 + 2 NA Intergenic Intergenic -185999 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 247-265 chr3 95608659 95608820 + 2 NA Intergenic Intergenic 74454 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 260-83 chr11 90366940 90367157 + 2 NA intron (NR_104190, intron 1 of 6) MIRb|SINE|MIR 115816 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 318-486 chr6 121823882 121824165 + 2 NA Intergenic Intergenic 388377 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 513-21 chr10 16896900 16897242 + 2 NA intron (NM_001081, intron 54 of 66) L1MDb|LINE|L1 -79617 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 418-147 chr22 36356662 36356989 + 2 NA intron (NM_002473, intron 1 of 40) L2a|LINE|L2 31242 NM_002473 4627 Hs.474751 NM_002473 ENSG00000100345 MYH9 BDPLT6|DFNA17|EPSTS|FTNS|MATINS|MHA|NMHC-II-A|NMMHC-IIA|NMMHCA myosin heavy chain 9 protein-coding 177-146 chr7 10678806 10678957 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -23795 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 556-213 chr7 143166560 143166971 + 2 NA intron (NM_001130026, intron 8 of 10) intron (NM_001130026, intron 8 of 10) -16654 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 575-9 chr1 119763678 119764141 + 2 NA intron (NM_005518, intron 2 of 9) MIRc|SINE|MIR 5023 NM_005518 3158 Hs.59889 NM_005518 ENSG00000134240 HMGCS2 - 3-hydroxy-3-methylglutaryl-CoA synthase 2 protein-coding 369-458 chrX 146256825 146257183 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -229132 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 147-26 chr15 26208677 26208768 + 2 NA Intergenic Intergenic 92909 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 292-320 chr4 69620748 69620975 + 2 NA intron (NM_001301239, intron 1 of 4) L1PREC2|LINE|L1 18781 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 350-20 chr1 166302689 166302864 + 2 NA Intergenic L2a|LINE|L2 -136021 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 228-147 chr19 28945979 28946149 + 2 NA Intergenic Intergenic -19067 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 279-79 chr12 42821015 42821234 + 2 NA Intergenic L1MA6|LINE|L1 128908 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 373-105 chr14 28478055 28478375 + 2 NA Intergenic L1M5|LINE|L1 287104 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 434-25 chr1 220622009 220622283 + 2 NA intron (NM_018650, intron 9 of 17) intron (NM_018650, intron 9 of 17) -68217 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 279-245 chr3 19416949 19417125 + 2 NA intron (NM_144633, intron 7 of 15) intron (NM_144633, intron 7 of 15) -102106 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 338-346 chr3 99517195 99517510 + 2 NA Intergenic LTR81A|LTR|Gypsy -121242 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 269-395 chr8 52532029 52532285 + 2 NA Intergenic Intergenic 33273 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 367-262 chr22 25439961 25440147 + 2 NA Intergenic L1MB1|LINE|L1 -8033 NR_033734 1416 Hs.571835 NR_033733 ENSG00000100058 CRYBB2P1 CRYB2B crystallin beta B2 pseudogene 1 pseudo 454-35 chr10 96440215 96440566 + 2 NA intron (NM_012465, intron 3 of 20) intron (NM_012465, intron 3 of 20) 73536 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 383-304 chr5 24893191 24893428 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -52726 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 437-111 chr18 66572877 66573221 + 2 NA intron (NM_001271028, intron 1 of 9) intron (NM_001271028, intron 1 of 9) 31041 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 436-96 chr16 13557189 13557572 + 2 NA Intergenic Intergenic -362777 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 751-48 chr3 162051042 162051597 + 2 NA Intergenic Harlequin-int|LTR|ERV1 554511 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 361-327 chr4 96476844 96477196 + 2 NA intron (NR_147149, intron 2 of 3) L1MA3|LINE|L1 166317 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 248-275 chr4 43915556 43915735 + 2 NA Intergenic L1PA12|LINE|L1 -101216 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 512-176 chr3 149980974 149981288 + 2 NA TTS (NM_001079809) TTS (NM_001079809) 2235 NM_001079809 653659 Hs.652908 NM_001079809 TMEM183B C1ORF37DUP|C1orf37-DUP transmembrane protein 183B protein-coding 380-223 chr20 60572145 60572384 + 2 NA Intergenic Intergenic 7702 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 343-321 chr22 33963640 33963953 + 2 NA Intergenic Intergenic -40908 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 1117-3 chr10 122000811 122001747 + 2 NA intron (NM_206862, intron 1 of 22) THE1B|LTR|ERVL-MaLR 12116 NM_206861 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 390-412 chr9 29018113 29018429 + 2 NA intron (NM_001354574, intron 1 of 5) L1PA16|LINE|L1 -129316 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 251-83 chr13 112014215 112014439 + 2 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 42017 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 603-128 chr5 16169196 16169587 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 10400 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 327-374 chr4 112463681 112463937 + 2 NA Intergenic L1PA15|LINE|L1 -51570 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 524-119 chr2 126722160 126722597 + 2 NA Intergenic Intergenic 66220 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 276-309 chr3 161153000 161153206 + 2 NA Intergenic FLAM_C|SINE|Alu -47731 NM_001349159 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 243-234 chr2 133285226 133285463 + 2 NA TTS (NR_110294) TTS (NR_110294) 19149 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 347-512 chr8 84571311 84571513 + 2 NA intron (NM_001354308, intron 3 of 9) L1PA15-16|LINE|L1 -134515 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 353-126 chr13 50633021 50633236 + 2 NA Intergenic Intergenic -105679 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 183-156 chr8 49807962 49808137 + 2 NA Intergenic L1MB3|LINE|L1 -101747 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 373-417 chr8 98971760 98972061 + 2 NA Intergenic MIR3|SINE|MIR 27468 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 429-186 chr3 3475609 3475863 + 2 NA Intergenic Intergenic -296019 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 577-208 chrX 47983523 47983942 + 2 NA intron (NM_001007088, intron 3 of 5) L1MC4|LINE|L1 20257 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 211-36 chr10 69984120 69984248 + 2 NA Intergenic L1MB7|LINE|L1 -68662 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 381-45 chr10 43685334 43685686 + 2 NA Intergenic Intergenic -36629 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 228-298 chr6 134129634 134129766 + 2 NA Intergenic Intergenic -12020 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 202-41 chr11 63743240 63743409 + 2 NA intron (NM_001265589, intron 3 of 8) L1M5|LINE|L1 25451 NM_001144936 65998 Hs.191073 NM_001144936 ENSG00000188070 C11orf95 - chromosome 11 open reading frame 95 protein-coding 432-3 chr1 41168084 41168339 + 2 NA intron (NM_001172218, intron 2 of 15) L1MA6|LINE|L1 -5194 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 307-99 chr12 19786381 19786624 + 2 NA Intergenic L1PA16|LINE|L1 -228183 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 485-107 chr17 59726449 59726763 + 2 NA intron (NM_001329394, intron 1 of 11) intron (NM_001329394, intron 1 of 11) 18952 NM_001329400 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 188-109 chr2 164713539 164713690 + 2 NA intron (NM_001365670, intron 7 of 13) intron (NM_001365670, intron 7 of 13) -25837 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 504-147 chr2 235159540 235159969 + 2 NA Intergenic Intergenic 132019 NM_001371306 324-68 chr10 83276575 83276829 + 2 NA Intergenic L1ME2z|LINE|L1 400387 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 474-26 chr10 17682781 17683094 + 2 NA intron (NM_001324285, intron 3 of 14) L1ME1|LINE|L1 38786 NM_001324284 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 148-6 chr1 164075748 164075824 + 2 NA Intergenic L1MC4|LINE|L1 -483574 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 449-282 chr8 119715025 119715406 + 2 NA Intergenic L1MB8|LINE|L1 -41825 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 308-500 chr8 99750877 99751069 + 2 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 142734 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 283-241 chr2 114234626 114234806 + 2 NA Intergenic L1ME3G|LINE|L1 -207925 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 496-2 chr1 14373553 14374027 + 2 NA intron (NR_149058, intron 3 of 4) intron (NR_149058, intron 3 of 4) 46183 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 335-224 chr19 55877495 55877787 + 2 NA intron (NM_134444, intron 8 of 9) MLT1B|LTR|ERVL-MaLR -40879 NM_145007 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 472-218 chr3 185503788 185504154 + 2 NA Intergenic Intergenic -4936 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 422-261 chr6 82813909 82814287 + 2 NA Intergenic Intergenic 251743 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 449-3 chr1 57458364 57458767 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -33644 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 241-144 chr17 61189939 61190141 + 2 NA intron (NM_001330413, intron 23 of 25) L2|LINE|L2 177664 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 232-248 chr3 101600211 101600377 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 26114 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 337-548 chr8 111235748 111235936 + 2 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) 361 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 228-82 chr13 37651354 37651564 + 2 NA exon (NM_016179, exon 8 of 11) exon (NM_016179, exon 8 of 11) -52615 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 350-492 chr7 97644263 97644503 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -87703 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 414-14 chr1 118264843 118265082 + 2 NA Intergenic L1PREC2|LINE|L1 -79734 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 529-143 chr3 111095319 111095701 + 2 NA intron (NM_001243288, intron 1 of 8) intron (NM_001243288, intron 1 of 8) 23694 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 290-140 chr14 87694959 87695229 + 2 NA Intergenic L1MA3|LINE|L1 -39800 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 439-140 chr2 123506447 123506766 + 2 NA Intergenic L1ME1|LINE|L1 -433125 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 300-307 chr4 18875041 18875292 + 2 NA Intergenic MER41-int|LTR|ERV1 -853291 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 748-44 chr19 34599343 34599988 + 2 NA intron (NR_027620, intron 1 of 3) THE1B|LTR|ERVL-MaLR -5080 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 492-163 chr21 33956582 33957062 + 2 NA intron (NR_134558, intron 2 of 2) AluSx1|SINE|Alu -19560 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 359-234 chr2 84560091 84560396 + 2 NA intron (NM_001370, intron 11 of 76) L1MC4|LINE|L1 43788 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 367-170 chr17 68635541 68635832 + 2 NA intron (NR_110825, intron 1 of 4) HAL1|LINE|L1 7532 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 360-223 chr2 80035784 80036111 + 2 NA intron (NM_001282598, intron 7 of 17) Plat_L3|LINE|CR1 -169364 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 260-471 chrX 98870765 98870930 + 2 NA Intergenic L1PA15|LINE|L1 -1306312 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 268-202 chr2 103879069 103879269 + 2 NA Intergenic Intergenic 529163 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 343-466 chr6 61854819 61855035 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 280797 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 120-37 chr4 78787733 78787834 + 2 NA intron (NM_017593, intron 1 of 13) intron (NM_017593, intron 1 of 13) 11405 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 218-231 chr3 181996995 181997149 + 2 NA intron (NR_104146, intron 5 of 7) L1MC4a|LINE|L1 44708 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 224-207 chr3 117411620 117411789 + 2 NA Intergenic Intergenic 279221 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 362-106 chr12 14574425 14574689 + 2 NA intron (NR_120465, intron 2 of 5) FLAM_C|SINE|Alu -6674 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 365-411 chr8 127576094 127576453 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -94134 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 288-392 chr7 4312419 4312646 + 2 NA Intergenic Intergenic -177695 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 408-325 chr7 145686771 145687051 + 2 NA Intergenic MER61B|LTR|ERV1 -850858 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 522-192 chr4 87246195 87246538 + 2 NA Intergenic L1MB7|LINE|L1 -25748 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 728-61 chr3 67085070 67085698 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 87077 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 332-77 chr10 123895891 123896109 + 2 NA Intergenic Intergenic -4193 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 622-123 chr6 139470150 139470675 + 2 NA non-coding (NR_033919, exon 4 of 4) non-coding (NR_033919, exon 4 of 4) 4184 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 600-66 chr2 98633560 98634075 + 2 NA intron (NM_001160154, intron 11 of 12) intron (NM_001160154, intron 11 of 12) 25228 NM_001330353 25972 Hs.13370 NM_014044 ENSG00000115446 UNC50 GMH1|HSD23|PDLs22|UNCL|URP unc-50 inner nuclear membrane RNA binding protein protein-coding 277-5 chr1 48469316 48469535 + 2 NA intron (NM_019073, intron 1 of 12) L1MC4a|LINE|L1 2779 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 370-223 chr2 44783915 44784106 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 154878 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 292-394 chr7 4915355 4915618 + 2 NA intron (NR_072989, intron 4 of 8) AluSz|SINE|Alu -31770 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 497-211 chr4 161819335 161819761 + 2 NA intron (NM_001128428, intron 4 of 14) intron (NM_001128428, intron 4 of 14) -203185 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 224-205 chr3 100010404 100010562 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -46085 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 457-92 chr17 55937740 55938146 + 2 NA Intergenic L1ME2z|LINE|L1 186838 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 219-106 chr14 88999511 88999676 + 2 NA Intergenic Intergenic 174942 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 243-412 chr7 26764550 26764726 + 2 NA intron (NM_003930, intron 4 of 12) L1PA7|LINE|L1 93085 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 207-319 chrX 47952255 47952397 + 2 NA Intergenic L1M4|LINE|L1 51663 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 571-190 chr9 91270686 91271162 + 2 NA intron (NM_001698, intron 6 of 9) intron (NM_001698, intron 6 of 9) 91000 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 218-78 chr13 23262285 23262455 + 2 NA intron (NM_000231, intron 4 of 7) L1PA14|LINE|L1 81449 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 300-247 chr20 55146761 55146922 + 2 NA Intergenic L1MC5|LINE|L1 -276202 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 147-45 chr2 106308135 106308253 + 2 NA Intergenic L1MC|LINE|L1 -61551 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 291-247 chr2 215248352 215248538 + 2 NA Intergenic Intergenic -63614 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 336-236 chr19 7162932 7163146 + 2 NA exon (NM_000208, exon 9 of 22) exon (NM_000208, exon 9 of 22) 93336 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 425-98 chr15 59958951 59959317 + 2 NA Intergenic L1ME2z|LINE|L1 -45177 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 617-10 chr1 238133807 238134415 + 2 NA Intergenic Intergenic -243189 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 157-54 chr19 50626772 50626860 + 2 NA intron (NM_001160328, intron 6 of 10) intron (NM_001160328, intron 6 of 10) 11229 NM_032298 84258 Hs.515554 NM_032298 ENSG00000213023 SYT3 SytIII synaptotagmin 3 protein-coding 219-382 chrX 6741732 6741891 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -206693 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 347-361 chr4 165429359 165429537 + 2 NA intron (NM_001873, intron 1 of 8) AluJb|SINE|Alu 43206 NR_030304 693163 NR_030304 ENSG00000207559 MIR578 MIRN578|hsa-mir-578 microRNA 578 ncRNA 301-379 chr5 156656832 156657125 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -193317 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 274-26 chr1 229904508 229904706 + 2 NA Intergenic L1ME1|LINE|L1 -10699 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 537-220 chr6 140590190 140590664 + 2 NA Intergenic Intergenic -93387 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 152-41 chr18 69633912 69634054 + 2 NA intron (NM_152721, intron 3 of 7) intron (NM_152721, intron 3 of 7) 164052 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 253-394 chr7 109334474 109334683 + 2 NA Intergenic Intergenic -449991 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 234-269 chr4 44136538 44136720 + 2 NA Intergenic L1MCa|LINE|L1 119567 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 481-180 chr20 60806497 60806913 + 2 NA Intergenic Intergenic 242143 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 305-161 chr14 88215993 88216181 + 2 NA intron (NM_138317, intron 4 of 6) intron (NM_138317, intron 4 of 6) 54824 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 208-81 chr15 61822813 61822982 + 2 NA Intergenic L3|LINE|CR1 92979 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 225-340 chr7 153445445 153445609 + 2 NA Intergenic MIRb|SINE|MIR -33293 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 368-153 chr14 83345345 83345664 + 2 NA Intergenic Intergenic 702872 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 212-352 chr9 95813898 95814025 + 2 NA intron (NR_023390, intron 2 of 2) intron (NR_023390, intron 2 of 2) -61730 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 264-32 chr10 10330154 10330351 + 2 NA Intergenic Intergenic 132097 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 391-172 chr2 67029174 67029471 + 2 NA Intergenic L1ME2z|LINE|L1 -57124 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 364-299 chr4 35450791 35451130 + 2 NA Intergenic L1MC|LINE|L1 792979 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 226-294 chr5 178978330 178978493 + 2 NA TTS (NM_000843) TTS (NM_000843) 16909 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 335-39 chr1 247703143 247703327 + 2 NA Intergenic L1MC4a|LINE|L1 9520 NM_001005286 343169 Hs.591529 NM_001005286 ENSG00000169214 OR6F1 OR1-34|OR1-38|OST731 olfactory receptor family 6 subfamily F member 1 protein-coding 773-18 chr2 185719560 185720222 + 2 NA TTS (NR_110215) TTS (NR_110215) 18828 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 373-426 chr8 139095850 139096200 + 2 NA Intergenic Intergenic -181984 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 200-283 chr9 26838913 26839066 + 2 NA Intergenic MIR3|SINE|MIR 53813 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 266-365 chr6 61554293 61554493 + 2 NA intron (NR_146870, intron 14 of 15) L1PA15|LINE|L1 -19737 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 344-235 chr2 48922012 48922200 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -137497 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 528-167 chr3 139293489 139293785 + 2 NA Intergenic Intergenic -50357 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22 mitochondrial ribosomal protein S22 protein-coding 718-86 chr7 62928047 62928728 + 2 NA Intergenic ALR/Alpha|Satellite|centr 375669 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 299-245 chr2 206383611 206383869 + 2 NA Intergenic L1ME1|LINE|L1 -59792 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 471-56 chr11 100586320 100586742 + 2 NA Intergenic MER121|DNA|hAT? -100757 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 255-393 chr7 89507768 89507930 + 2 NA Intergenic MIRb|SINE|MIR -611551 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 237-314 chr5 161135000 161135177 + 2 NA Intergenic AluSz|SINE|Alu -196462 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 378-221 chr2 48654988 48655322 + 2 NA intron (NM_172311, intron 8 of 10) L1ME1|LINE|L1 37299 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 218-106 chr15 91274501 91274716 + 2 NA intron (NM_001323036, intron 8 of 11) L1MEf|LINE|L1 172812 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 405-253 chr5 96087487 96087816 + 2 NA intron (NR_130776, intron 1 of 4) (AATC)n|Simple_repeat|Simple_repeat 8513 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 355-311 chr3 8262073 8262318 + 2 NA intron (NR_033378, intron 3 of 3) L1M4|LINE|L1 239463 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 225-275 chr5 39191978 39192158 + 2 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 27495 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 457-112 chr2 35838557 35838845 + 2 NA Intergenic Intergenic 367296 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 567-97 chr20 12461330 12461704 + 2 NA Intergenic L1MA10|LINE|L1 475446 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 341-325 chr3 25382922 25383119 + 2 NA TTS (NR_134933) TTS (NR_134933) 1907 NR_134933 105376997 Hs.536687 NR_134933 RARB-AS1 - RARB antisense RNA 1 ncRNA 376-426 chr9 72724277 72724568 + 2 NA intron (NM_138691, intron 8 of 23) MSTD|LTR|ERVL-MaLR 149687 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 336-386 chr4 14838555 14838769 + 2 NA intron (NR_126435, intron 2 of 6) MLT1B|LTR|ERVL-MaLR 49507 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 370-261 chr2 221979448 221979633 + 2 NA Intergenic Intergenic -318607 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 306-379 chr5 9543961 9544214 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 1988 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 453-99 chr18 56244370 56244747 + 2 NA Intergenic Intergenic -53296 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 322-9 chr1 61561288 61561585 + 2 NA Intergenic L2a|LINE|L2 -92806 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 259-87 chr12 29437601 29437787 + 2 NA TTS (NM_001353179) TTS (NM_001353179) 48400 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 187-5 chr1 43232247 43232389 + 2 NA intron (NM_001195831, intron 19 of 23) intron (NM_001195831, intron 19 of 23) -37665 NM_144626 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 817-14 chr14 31729462 31729891 + 2 NA intron (NM_001201574, intron 1 of 5) intron (NM_001201574, intron 1 of 5) 15107 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 407-262 chr5 142746697 142746961 + 2 NA intron (NR_110558, intron 1 of 3) intron (NR_110558, intron 1 of 3) 1229 NR_110558 101926975 Hs.638583 NR_110558 ENSG00000236714 LINC01844 - long intergenic non-protein coding RNA 1844 ncRNA 333-313 chr20 55452660 55452856 + 2 NA Intergenic Intergenic -25561 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 271-163 chr17 56471597 56471816 + 2 NA intron (NM_001370326, intron 15 of 20) L1MB7|LINE|L1 -121993 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 317-115 chr12 116734197 116734449 + 2 NA intron (NM_024738, intron 1 of 4) Tigger3|DNA|TcMar-Tigger 3746 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 308-399 chr5 133107827 133108061 + 2 NA Intergenic AluSx4|SINE|Alu 55931 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 276 chr1 11004825 11005070 + 2 NA Intergenic L1MC5a|LINE|L1 -7675 NM_007375 23435 Hs.300624 NM_007375 ENSG00000120948 TARDBP ALS10|TDP-43 TAR DNA binding protein protein-coding 496-167 chr22 22071835 22072220 + 2 NA Intergenic Intergenic -28093 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 289-461 chr8 53453712 53453992 + 2 NA Intergenic MIR|SINE|MIR 70113 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 396-335 chr7 70229198 70229565 + 2 NA intron (NM_015570, intron 4 of 18) L1M4a2|LINE|L1 630906 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 657-9 chr1 193974080 193974607 + 2 NA Intergenic Intergenic 669598 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 496-265 chr7 65487991 65488301 + 2 NA Intergenic ALR/Alpha|Satellite|centr 66919 NR_157837 101929322 NR_157837 LOC101929322 - integrator complex subunit 4 pseudogene pseudo 363-245 chr2 217444128 217444417 + 2 NA intron (NR_026597, intron 3 of 12) LTR33|LTR|ERVL 161539 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 292-98 chr12 30288121 30288283 + 2 NA Intergenic L1MB7|LINE|L1 389042 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 442-90 chr15 46216905 46217173 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie 511844 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 441-253 chr7 110644091 110644489 + 2 NA Intergenic Intergenic -446716 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 330-392 chr4 164068022 164068270 + 2 NA intron (NM_001166373, intron 2 of 7) L1PA16|LINE|L1 129565 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 301-274 chr3 17873013 17873254 + 2 NA Intergenic Intergenic -89419 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 373-307 chr5 11879222 11879445 + 2 NA intron (NM_001288717, intron 1 of 20) (TA)n|Simple_repeat|Simple_repeat 25113 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 251-208 chr21 14671376 14671591 + 2 NA Intergenic L1ME3|LINE|L1 -28376 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 209-172 chr20 15766330 15766499 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 156900 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 319-227 chr2 11356193 11356461 + 2 NA Intergenic Intergenic -10890 NM_001321643 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 462-194 chr4 23900065 23900489 + 2 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -10230 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 422-51 chr11 116012780 116013041 + 2 NA Intergenic L1ME1|LINE|L1 -252710 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 372-404 chr5 79718901 79719103 + 2 NA intron (NM_153610, intron 1 of 12) Tigger3a|DNA|TcMar-Tigger 29166 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 414-318 chr8 31870460 31870852 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -155080 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 369-434 chr8 142316133 142316321 + 2 NA intron (NM_145003, intron 7 of 13) intron (NM_145003, intron 7 of 13) 86955 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 179-48 chr2 85822361 85822475 + 2 NA intron (NR_038888, intron 2 of 2) AluJb|SINE|Alu 7288 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 234-13 chr1 104521274 104521412 + 2 NA Intergenic Intergenic 448320 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 188-145 chr4 23165887 23165996 + 2 NA Intergenic MIRb|SINE|MIR 451852 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 447-29 chr10 65718504 65718869 + 2 NA intron (NR_120647, intron 4 of 5) intron (NR_120647, intron 4 of 5) 147261 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 326-497 chr7 55569934 55570225 + 2 NA intron (NM_001321244, intron 1 of 5) intron (NM_001321244, intron 1 of 5) 1789 NM_001321250 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 574-168 chr7 56209674 56210226 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -93533 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 210-81 chr14 86056223 86056379 + 2 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 121623 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 287-123 chr13 64429327 64429539 + 2 NA Intergenic Intergenic -353422 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 449-248 chr7 5102538 5102892 + 2 NA Intergenic AluJr|SINE|Alu 30655 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 390-147 chr17 68953244 68953630 + 2 NA intron (NM_001288985, intron 1 of 39) intron (NM_001288985, intron 1 of 39) 1955 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 514-168 chr20 15846916 15847346 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 76183 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 191-228 chrX 57648111 57648295 + 2 NA Intergenic MER4D1|LTR|ERV1 32057 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 332-341 chr3 115165315 115165644 + 2 NA Intergenic Intergenic -18191 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 357-148 chr16 74137015 74137333 + 2 NA Intergenic Intergenic 78347 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 348-13 chr1 101530172 101530440 + 2 NA Intergenic Intergenic 206469 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 366-381 chr6 124829701 124829929 + 2 NA Intergenic MER45R|DNA|hAT-Tip100 -132730 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 265-376 chr7 134843629 134843852 + 2 NA intron (NM_033157, intron 1 of 14) intron (NM_033157, intron 1 of 14) -47660 NM_033139 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 555-139 chr4 41063197 41063571 + 2 NA intron (NM_001330658, intron 3 of 15) MER58B|DNA|hAT-Charlie 151158 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 224-162 chr2 178712719 178712892 + 2 NA exon (NM_001267550, exon 94 of 363) exon (NM_001267550, exon 94 of 363) -64121 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 132-37 chr18 28485260 28485361 + 2 NA Intergenic L1MD1|LINE|L1 -308180 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 114-31 chr2 209719463 209719567 + 2 NA intron (NM_001363910, intron 13 of 15) intron (NM_001363910, intron 13 of 15) -52317 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 240-184 chr18 1531965 1532167 + 2 NA Intergenic Intergenic -172437 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 266-247 chr3 60761139 60761388 + 2 NA intron (NR_148921, intron 4 of 4) intron (NR_148921, intron 4 of 4) -143393 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 250-196 chr2 45671484 45671687 + 2 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 19910 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 396-110 chr14 98942226 98942494 + 2 NA Intergenic HAL1b|LINE|L1 230747 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 258-170 chr18 46211849 46212086 + 2 NA intron (NM_001008239, intron 1 of 3) intron (NM_001008239, intron 1 of 3) 37933 NM_145055 147339 Hs.116486 NM_145055 ENSG00000152242 C18orf25 ARKL1|Ark2N|RNF111L1 chromosome 18 open reading frame 25 protein-coding 217-305 chr5 108084853 108085018 + 2 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 297163 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 297-356 chr5 14567890 14568086 + 2 NA Intergenic Intergenic -13804 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 168-20 chr11 104600354 104600509 + 2 NA intron (NR_120585, intron 1 of 3) L1MC1|LINE|L1 8871 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 243-295 chr3 108820962 108821161 + 2 NA Intergenic Intergenic -1725 NM_001317747 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 164-22 chr11 100374999 100375152 + 2 NA Intergenic Intergenic -312213 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 492-212 chr5 107667183 107667515 + 2 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 3588 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 404-313 chr8 84118394 84118652 + 2 NA Intergenic Intergenic -64264 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 428-168 chr3 3949481 3949851 + 2 NA Intergenic L1MC1|LINE|L1 -148791 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 447-49 chr11 116387227 116387580 + 2 NA Intergenic Intergenic -252019 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 402-141 chr2 46592621 46592972 + 2 NA intron (NM_173074, intron 4 of 6) intron (NM_173074, intron 4 of 6) -12558 NR_104182 100506142 Hs.658541 NR_104182 ENSG00000250116 LOC100506142 - uncharacterized LOC100506142 ncRNA 313-528 chr8 88982978 88983255 + 2 NA Intergenic L2|LINE|L2 -655633 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 365-40 chr10 22894338 22894626 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -33542 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 323-554 chr8 89141964 89142138 + 2 NA Intergenic L1MEc|LINE|L1 615660 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 296-338 chr4 63681000 63681288 + 2 NA Intergenic Intergenic 728306 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 197-79 chr18 39186700 39186869 + 2 NA Intergenic Intergenic 435391 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 410-344 chrX 98114924 98115207 + 2 NA Intergenic Intergenic -550530 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 192-11 chr1 186847617 186847784 + 2 NA intron (NM_024420, intron 1 of 17) LTR78|LTR|ERV1 18751 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 293-280 chr3 142992958 142993164 + 2 NA intron (NR_125393, intron 2 of 4) L1MB3|LINE|L1 8406 NR_034032 100289361 Hs.599649 NR_034032 ENSG00000268129 LOC100289361 - uncharacterized LOC100289361 ncRNA 499-150 chr21 18681348 18681665 + 2 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 4658 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 320-318 chr20 58143659 58143828 + 2 NA Intergenic Intergenic -7159 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 388-296 chr5 167205777 167206135 + 2 NA intron (NM_001122679, intron 1 of 29) MLT1E3|LTR|ERVL-MaLR -37555 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 332-304 chr21 30277374 30277659 + 2 NA Intergenic Intergenic 5434 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 210-164 chr22 28566663 28566825 + 2 NA intron (NM_001145418, intron 2 of 22) HAL1|LINE|L1 106875 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 449-157 chr22 26272806 26273145 + 2 NA intron (NM_001184776, intron 1 of 14) MIRb|SINE|MIR 103501 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 320-398 chr4 109324031 109324232 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 21096 NR_160939 645078 Hs.518784 NM_001039778 ZCCHC23 - zinc finger CCHC-type containing 23 ncRNA 249-377 chr7 27867188 27867375 + 2 NA intron (NM_175061, intron 3 of 4) intron (NM_175061, intron 3 of 4) 127186 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 184-25 chr10 54584224 54584376 + 2 NA intron (NR_134503, intron 2 of 5) AluJo|SINE|Alu 23657 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 290-264 chr22 44506285 44506502 + 2 NA Intergenic AluSx1|SINE|Alu -8160 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 281-132 chr15 33290073 33290273 + 2 NA Intergenic Intergenic 20072 NR_120326 101928134 Hs.133851 NR_120326 ENSG00000259446 LOC101928134 - uncharacterized LOC101928134 ncRNA 492-131 chr2 98968066 98968384 + 2 NA Intergenic L1MA4|LINE|L1 -32000 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 554-98 chr18 2540942 2541303 + 2 NA intron (NM_001308401, intron 7 of 7) intron (NM_001308401, intron 7 of 7) 30383 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 384-396 chr9 31490211 31490419 + 2 NA Intergenic L1MC|LINE|L1 -108825 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 280-304 chr4 173995760 173995959 + 2 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 98586 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 610-160 chr7 41891376 41891721 + 2 NA Intergenic Intergenic -188458 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 170-69 chr2 63569540 63569683 + 2 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) 18866 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 500-196 chr3 181394769 181395156 + 2 NA intron (NR_075091, intron 3 of 7) L1MA9|LINE|L1 47524 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 203-13 chr1 177437035 177437203 + 2 NA Intergenic Intergenic 85533 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 429-25 chr1 213682008 213682325 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -242583 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 346-360 chr4 110917161 110917345 + 2 NA Intergenic Intergenic -56606 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 675-25 chr13 29575666 29576104 + 2 NA intron (NM_003045, intron 1 of 12) intron (NM_003045, intron 1 of 12) 19803 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 285-85 chr12 39144376 39144540 + 2 NA Intergenic Intergenic -238867 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 230-368 chr8 61910369 61910518 + 2 NA Intergenic Intergenic 20604 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 188-74 chr16 73444151 73444335 + 2 NA Intergenic Intergenic 57438 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 912-15 chr15 92190231 92190924 + 2 NA Intergenic Intergenic -203304 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 141-7 chr1 209263956 209264090 + 2 NA Intergenic L1M8|LINE|L1 -61433 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 572-169 chr8 79021323 79021819 + 2 NA Intergenic Intergenic 184042 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 379-23 chr1 175060319 175060628 + 2 NA Intergenic Intergenic -7360 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 258-33 chr1 219011694 219011920 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) -93296 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 310-81 chr11 79521544 79521841 + 2 NA Intergenic Intergenic -80662 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 479-218 chr6 102706794 102707129 + 2 NA Intergenic Intergenic 1307976 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 426-264 chr7 18628442 18628749 + 2 NA intron (NM_001321893, intron 7 of 11) intron (NM_001321893, intron 7 of 11) 119325 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 341-140 chr13 94933302 94933542 + 2 NA non-coding (NR_110754, exon 5 of 5) non-coding (NR_110754, exon 5 of 5) -26619 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 317-16 chr1 81426715 81426882 + 2 NA intron (NM_001366004, intron 2 of 27) intron (NM_001366004, intron 2 of 27) 120403 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 199-89 chr18 21880831 21881022 + 2 NA Intergenic L1MA4|LINE|L1 -49520 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 455-7 chr1 83766871 83767166 + 2 NA intron (NR_119375, intron 1 of 2) intron (NR_119375, intron 1 of 2) 93528 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 395-299 chr6 148410298 148410682 + 2 NA intron (NM_001346506, intron 2 of 20) intron (NM_001346506, intron 2 of 20) 67652 NM_001346506 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 367-203 chr2 77240766 77241028 + 2 NA intron (NR_146416, intron 1 of 1) L1MB3|LINE|L1 254932 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 253-342 chr5 117216511 117216741 + 2 NA Intergenic Intergenic -198886 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 286-482 chr9 87786077 87786277 + 2 NA intron (NR_027917, intron 4 of 4) intron (NR_027917, intron 4 of 4) 13262 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 506-184 chr3 103809758 103810137 + 2 NA Intergenic L1PA13|LINE|L1 -285831 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 421-132 chr2 38611692 38611945 + 2 NA Intergenic LTR67B|LTR|ERVL -8782 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 344-466 chr7 108981698 108982003 + 2 NA Intergenic Intergenic -97263 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 512-88 chr15 60260471 60260830 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie 137336 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 158-7 chr1 197432420 197432501 + 2 NA intron (NM_001193640, intron 6 of 9) intron (NM_001193640, intron 6 of 9) 164208 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 457-42 chr11 123986424 123986859 + 2 NA Intergenic Intergenic 8520 NM_001355219 79490 NM_001355219 ENSG00000198674 OR10G6 OR10G6P|OR10G6Q olfactory receptor family 10 subfamily G member 6 protein-coding 300-265 chr3 12494259 12494442 + 2 NA intron (NM_025265, intron 3 of 11) L1MC5|LINE|L1 9821 NM_001321279 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 341-361 chr3 187420543 187420780 + 2 NA Intergenic L1PA17|LINE|L1 -26385 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 363-301 chr3 150670978 150671191 + 2 NA intron (NM_001308234, intron 11 of 13) FLAM_A|SINE|Alu -32480 NR_121675 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 1065-16 chr8 77153750 77154466 + 2 NA Intergenic Intergenic -153064 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 274-249 chr22 31394572 31394836 + 2 NA Intergenic Intergenic -4900 NM_004147 4733 Hs.115242 NM_004147 ENSG00000185721 DRG1 NEDD3 developmentally regulated GTP binding protein 1 protein-coding 479-266 chr8 139551302 139551724 + 2 NA Intergenic Intergenic 151610 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 178-17 chr10 34174762 34174892 + 2 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -402147 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 219-281 chr5 60562364 60562527 + 2 NA Intergenic Intergenic -66159 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 206-273 chr8 126637539 126637690 + 2 NA Intergenic Intergenic -79136 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 241-197 chr2 130845324 130845523 + 2 NA intron (NM_001367493, intron 1 of 13) AluJo|SINE|Alu 8509 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 400-254 chr4 71341074 71341470 + 2 NA intron (NM_003759, intron 1 of 22) intron (NM_003759, intron 1 of 22) 2219 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 189-231 chrX 126017682 126017843 + 2 NA Intergenic L1MA3|LINE|L1 -92000 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 296-506 chrX 81875193 81875372 + 2 NA Intergenic MER52D|LTR|ERV1 673180 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 257-448 chrX 31510212 31510422 + 2 NA intron (NM_000109, intron 55 of 78) MIRc|SINE|MIR -2019 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 431-282 chr7 153108838 153109262 + 2 NA Intergenic L2a|LINE|L2 303184 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 386-380 chr9 82026480 82026778 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 37857 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 435-88 chr15 96477534 96477925 + 2 NA Intergenic L1ME1|LINE|L1 143964 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 220-165 chr2 68983763 68983924 + 2 NA Intergenic L1M5|LINE|L1 9270 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 274-388 chr8 86532802 86533045 + 2 NA intron (NM_003909, intron 6 of 16) intron (NM_003909, intron 6 of 16) 18488 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 544-205 chr7 18229890 18230331 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -59982 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 233-71 chr12 17246759 17246934 + 2 NA Intergenic Intergenic 258099 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 417-89 chr14 101047976 101048293 + 2 NA promoter-TSS (NR_030257) promoter-TSS (NR_030257) 233 NR_030595 100126345 NR_030595 ENSG00000216099 MIR889 MIRN889|hsa-mir-889|mir-889 microRNA 889 ncRNA 267-149 chr17 72050427 72050604 + 2 NA intron (NR_110877, intron 1 of 2) intron (NR_110877, intron 1 of 2) 7219 NR_110877 102723517 Hs.600042 NR_110877 ENSG00000234899 LOC102723517 - uncharacterized LOC102723517 ncRNA 519-204 chr6 155864522 155865011 + 2 NA Intergenic L1ME1|LINE|L1 -82031 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 217-317 chr5 158541763 158541916 + 2 NA Intergenic Intergenic -132066 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 178-43 chr14 49272306 49272455 + 2 NA Intergenic Intergenic 314000 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 259-407 chr8 109006798 109006959 + 2 NA Intergenic L1ME4b|LINE|L1 -79750 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 228-225 chr3 157311486 157311637 + 2 NA intron (NM_001167911, intron 10 of 12) intron (NM_001167911, intron 10 of 12) -125289 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 386-107 chr14 82038098 82038447 + 2 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -295134 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 460-270 chr7 33476906 33477216 + 2 NA intron (NM_001348037, intron 18 of 20) MIR|SINE|MIR 347497 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 435-54 chr11 133712885 133713215 + 2 NA Intergenic MIRc|SINE|MIR 97326 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 456-127 chr17 12776798 12777181 + 2 NA intron (NR_104607, intron 1 of 1) L1ME3A|LINE|L1 -12509 NR_135569 9912 Hs.499758 NM_014859 ENSG00000006740 ARHGAP44 NPC-A-10|RICH2 Rho GTPase activating protein 44 protein-coding 267-19 chr1 107778193 107778428 + 2 NA intron (NM_006113, intron 3 of 26) intron (NM_006113, intron 3 of 26) -89811 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 338-589 chr9 74297664 74297866 + 2 NA Intergenic Intergenic -73766 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 205-43 chr10 111715411 111715566 + 2 NA Intergenic L1MCa|LINE|L1 468277 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 234-145 chr18 60993229 60993418 + 2 NA Intergenic L1MEf|LINE|L1 -340107 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 312-530 chr8 118674405 118674586 + 2 NA intron (NR_038210, intron 3 of 4) (TA)n|Simple_repeat|Simple_repeat -52532 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 169-67 chr21 20030029 20030129 + 2 NA Intergenic Intergenic -130324 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 168-114 chr8 102610012 102610161 + 2 NA Intergenic Intergenic 43878 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 244-18 chr1 165488788 165489027 + 2 NA intron (NR_026744, intron 5 of 6) UCON40|Unknown|Unknown -43552 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 457-119 chr2 105835720 105835989 + 2 NA intron (NM_003581, intron 2 of 4) L1MA5|LINE|L1 -15993 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 146-85 chr7 81110623 81110766 + 2 NA Intergenic Intergenic -188305 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 253-138 chr14 87606373 87606540 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 48838 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 346-456 chr7 22281769 22281956 + 2 NA intron (NM_012294, intron 6 of 25) intron (NM_012294, intron 6 of 25) 75292 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 344-129 chr14 45525301 45525637 + 2 NA Intergenic L1MA9|LINE|L1 190133 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 292-263 chr21 29536719 29536949 + 2 NA TTS (NM_001330994) TTS (NM_001330994) 40787 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 451-6 chr1 60880011 60880411 + 2 NA Intergenic L1M6|LINE|L1 -54627 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 258-184 chr2 57216148 57216400 + 2 NA Intergenic L1MA7|LINE|L1 -691377 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 372-198 chr18 2391651 2391891 + 2 NA Intergenic Intergenic 179734 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 298-496 chr9 68762987 68763276 + 2 NA intron (NM_003558, intron 2 of 15) L2c|LINE|L2 -16934 NM_138333 116224 Hs.655572 NM_138333 ENSG00000187866 FAM122A C9orf42 family with sequence similarity 122A protein-coding 335-435 chr5 125640616 125640911 + 2 NA Intergenic L1MA7|LINE|L1 147502 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 391-18 chr1 181701204 181701399 + 2 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 217784 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 310-463 chr6 148725231 148725411 + 2 NA Intergenic L1ME1|LINE|L1 -21709 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 183-148 chr7 113319072 113319199 + 2 NA Intergenic Intergenic -200553 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 863-22 chr2 112203120 112203699 + 2 NA Intergenic L1M4|LINE|L1 51633 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 257-415 chr8 113507256 113507417 + 2 NA Intergenic L1M4b|LINE|L1 -70397 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 218-294 chr6 153548177 153548341 + 2 NA Intergenic L1ME3D|LINE|L1 -416977 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 336-470 chr5 153919231 153919469 + 2 NA Intergenic Intergenic -20363 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 419-187 chr3 81943979 81944285 + 2 NA Intergenic L1MA9|LINE|L1 -42010 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 318-331 chr21 26914261 26914431 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -39615 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 658-115 chr7 71922850 71923326 + 2 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 414303 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 298-280 chr22 34083131 34083348 + 2 NA Intergenic MIR|SINE|MIR -160351 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 222-234 chr3 67282350 67282497 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 56959 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 353-374 chr4 67291552 67291803 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 130323 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 189-203 chr8 58036037 58036197 + 2 NA intron (NM_147189, intron 2 of 4) intron (NM_147189, intron 2 of 4) 41594 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 668-119 chrX 93615788 93616317 + 2 NA Intergenic Intergenic 57526 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 339-22 chr1 101058185 101058504 + 2 NA intron (NR_109849, intron 1 of 4) intron (NR_109849, intron 1 of 4) 32498 NR_109849 102606465 Hs.593669 NR_109849 LOC102606465 - uncharacterized LOC102606465 ncRNA 324-484 chr7 17332603 17332798 + 2 NA intron (NM_001621, intron 6 of 10) Tigger3b|DNA|TcMar-Tigger 34048 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 465-306 chr8 134861346 134861765 + 2 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 11620 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 274-281 chr4 45123269 45123415 + 2 NA Intergenic L1MC3|LINE|L1 -396708 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 334-269 chr2 80862778 80862983 + 2 NA Intergenic L1P4d|LINE|L1 549501 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 250-51 chr10 101834815 101834996 + 2 NA intron (NM_173192, intron 1 of 8) intron (NM_173192, intron 1 of 8) 4966 NM_173194 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 464-117 chr2 51288151 51288465 + 2 NA intron (NR_135237, intron 2 of 10) MIR|SINE|MIR 255707 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 383-70 chr11 121125288 121125653 + 2 NA exon (NM_005422, exon 7 of 23) exon (NM_005422, exon 7 of 23) 22804 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 463-50 chr11 18116447 18116750 + 2 NA promoter-TSS (NR_026576) promoter-TSS (NR_026576) -466 NR_026576 6290 Hs.454496 NR_026576 ENSG00000166787 SAA3P SAA3 serum amyloid A3, pseudogene pseudo 345-212 chr18 4780235 4780435 + 2 NA Intergenic Intergenic -300847 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 478-149 chr2 136854057 136854344 + 2 NA intron (NM_001316349, intron 1 of 27) L1MC4|LINE|L1 88655 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 238-140 chr17 61540436 61540638 + 2 NA Intergenic L1PA16|LINE|L1 50682 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 285-262 chr3 34818355 34818546 + 2 NA Intergenic L1M3|LINE|L1 575573 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 274-244 chr20 57110781 57111010 + 2 NA Intergenic L1MB3|LINE|L1 -102801 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 271-228 chr20 19344972 19345169 + 2 NA intron (NM_020689, intron 2 of 16) L1PB1|LINE|L1 -60474 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 543-268 chrX 26140740 26141167 + 2 NA TTS (NM_173699) TTS (NM_173699) 2610 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 371-40 chr10 27462967 27463184 + 2 NA Intergenic Intergenic -41099 NM_001256412 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 216-132 chr17 52946646 52946848 + 2 NA Intergenic Intergenic -38758 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 473-73 chr13 102940494 102940855 + 2 NA Intergenic MIRb|SINE|MIR 60575 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 903-35 chr7 51366475 51367296 + 2 NA Intergenic Intergenic 26371 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 304-378 chr4 59961595 59961881 + 2 NA Intergenic HERV16-int|LTR|ERVL 948165 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 223-300 chr6 40034175 40034354 + 2 NA Intergenic Intergenic -99802 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 349-203 chr16 84164555 84164882 + 2 NA intron (NM_178452, intron 6 of 11) L1MC2|LINE|L1 5678 NM_001318756 123872 Hs.310164 NM_178452 ENSG00000154099 DNAAF1 CILD13|LRRC50|ODA7|swt dynein axonemal assembly factor 1 protein-coding 217-23 chr1 220789621 220789786 + 2 NA intron (NM_022746, intron 1 of 6) L1MB4|LINE|L1 2790 NM_022746 64757 Hs.497816 NM_022746 ENSG00000186205 MARC1 MOSC1 mitochondrial amidoxime reducing component 1 protein-coding 180-145 chr5 158558636 158558795 + 2 NA Intergenic MIRc|SINE|MIR -148942 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 349-316 chr22 34708122 34708325 + 2 NA Intergenic Intergenic 289693 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 296-257 chr2 220769258 220769516 + 2 NA Intergenic L1ME3Cz|LINE|L1 802917 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 362-267 chr3 30271474 30271762 + 2 NA Intergenic Intergenic -247250 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 279-231 chr21 18595999 18596154 + 2 NA intron (NR_109925, intron 2 of 3) HAL1|LINE|L1 90088 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 234-203 chr2 223497908 223498105 + 2 NA Intergenic Intergenic 104355 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 252-101 chr13 44125145 44125325 + 2 NA intron (NR_104065, intron 1 of 4) HAL1b|LINE|L1 14686 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 477-228 chr4 115329170 115329616 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -215773 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 293-62 chr11 72517134 72517398 + 2 NA Intergenic Intergenic -53390 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 387-283 chr5 65096506 65096888 + 2 NA Intergenic L1MC|LINE|L1 327767 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 328-311 chr20 15812081 15812346 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 111101 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 115-29 chr4 7690815 7690877 + 2 NA intron (NM_020777, intron 11 of 26) intron (NM_020777, intron 11 of 26) -63244 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 423-235 chr5 153161773 153162120 + 2 NA Intergenic Intergenic -189597 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 377-403 chr8 87783388 87783657 + 2 NA Intergenic Intergenic 90493 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 209-338 chr8 135548896 135549080 + 2 NA intron (NM_006558, intron 4 of 8) MIRc|SINE|MIR 91532 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 517-258 chr8 27099137 27099515 + 2 NA Intergenic L2a|LINE|L2 -50363 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 562-150 chr3 161386983 161387411 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -14247 NM_001320679 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 930-14 chr17 51588631 51589250 + 2 NA Intergenic Intergenic 153513 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 393-339 chr7 108160774 108161085 + 2 NA intron (NM_001371175, intron 23 of 25) MARNA|DNA|TcMar-Mariner -30568 NM_001318048 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 197-208 chr8 116985118 116985293 + 2 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 34230 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 573-52 chr12 87297222 87297556 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -33350 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 308-90 chr11 113195780 113195934 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 78044 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 297-102 chr12 24356691 24356923 + 2 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 133536 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 238-153 chr18 71743722 71743904 + 2 NA intron (NR_126324, intron 1 of 4) L1PA15-16|LINE|L1 38413 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 230-34 chr10 31085577 31085750 + 2 NA Intergenic Intergenic -53726 NM_001143768 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 135-69 chr8 125751054 125751183 + 2 NA Intergenic MIR3|SINE|MIR 200079 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 416-221 chr3 55007567 55007931 + 2 NA intron (NM_018398, intron 32 of 37) intron (NM_018398, intron 32 of 37) -40647 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 320-69 chr10 104441212 104441519 + 2 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 38910 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 284-245 chr21 30014034 30014245 + 2 NA Intergenic L1MEf|LINE|L1 -74087 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 316-247 chr2 10822650 10822865 + 2 NA intron (NM_001282704, intron 1 of 14) intron (NM_001282704, intron 1 of 14) 9728 NM_001282704 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 683-24 chr16 79566939 79567421 + 2 NA Intergenic AluSq2|SINE|Alu 33557 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 377-92 chr12 52484843 52485101 + 2 NA Intergenic L1MA5A|LINE|L1 8285 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 396-191 chr20 19046972 19047204 + 2 NA Intergenic Intergenic -165554 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 372-169 chr16 12581589 12581813 + 2 NA Intergenic Intergenic -138620 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 437-251 chr7 28878455 28878890 + 2 NA Intergenic Intergenic 79658 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 247-424 chr9 14139127 14139277 + 2 NA intron (NR_161384, intron 5 of 7) MIRb|SINE|MIR 41600 NM_001282787 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 653-129 chr8 140184933 140185483 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -84673 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 266-210 chr2 212784673 212784835 + 2 NA Intergenic Intergenic -10577 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 302-10 chr1 90836524 90836732 + 2 NA promoter-TSS (NR_147932) promoter-TSS (NR_147932) -467 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 327-121 chr12 89190981 89191163 + 2 NA Intergenic L1MA8|LINE|L1 161429 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 340-268 chr2 86661948 86662277 + 2 NA intron (NM_001198954, intron 2 of 7) intron (NM_001198954, intron 2 of 7) -38235 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 257-385 chr7 46266852 46267015 + 2 NA Intergenic Intergenic -345661 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 302-195 chr2 6657450 6657691 + 2 NA Intergenic Intergenic -7051 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 601-44 chr14 88148961 88149546 + 2 NA Intergenic Intergenic 121658 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 214-57 chr11 6293199 6293375 + 2 NA Intergenic Intergenic 27214 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 CAVIN3 HSRBC|PRKCDBP|SRBC|cavin-3 caveolae associated protein 3 protein-coding 994-10 chr2 240487936 240488656 + 2 NA intron (NM_017844, intron 11 of 13) L1MA4A|LINE|L1 -31596 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 378-270 chr3 1525165 1525451 + 2 NA Intergenic L2a|LINE|L2 432284 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 376-166 chr2 6293224 6293562 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 82029 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 363-238 chr2 180823025 180823316 + 2 NA intron (NR_104324, intron 3 of 4) HAL1|LINE|L1 131066 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 286-276 chr3 54520473 54520703 + 2 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 119269 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 542-89 chr19 50869390 50869788 + 2 NA Intergenic LTR40a|LTR|ERVL -3844 NM_001256080 3817 Hs.515560 NM_005551 ENSG00000167751 KLK2 KLK2A2|hGK-1|hK2 kallikrein related peptidase 2 protein-coding 436-306 chr8 96061152 96061497 + 2 NA Intergenic L2a|LINE|L2 99482 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 277-126 chr15 77394266 77394480 + 2 NA intron (NM_024776, intron 1 of 7) L1MA3|LINE|L1 25731 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 245-308 chr6 128889856 128890061 + 2 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 6817 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 378-429 chr8 36937438 36937687 + 2 NA Intergenic Intergenic 153188 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 131-7 chr1 188150162 188150286 + 2 NA Intergenic Intergenic 706596 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 256-81 chr12 16978957 16979119 + 2 NA Intergenic L1M4c|LINE|L1 -9709 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 501-7 chr1 96146796 96147288 + 2 NA Intergenic Intergenic 154974 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 353-564 chrUn_KI270538v1 64546 64778 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 386-390 chrX 108864799 108865130 + 2 NA Intergenic L1MA4|LINE|L1 128424 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 617 chr1 3949264 3949769 + 2 NA promoter-TSS (NR_147024) promoter-TSS (NR_147024) -536 NR_147024 105376672 Hs.435087 NR_147024 ENSG00000226374 LINC01345 - long intergenic non-protein coding RNA 1345 ncRNA 287-169 chr18 12497557 12497780 + 2 NA intron (NM_020148, intron 6 of 15) intron (NM_020148, intron 6 of 15) 64894 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 188-220 chr9 78980414 78980555 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 165182 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 452-292 chr9 81402352 81402795 + 2 NA Intergenic Intergenic 286962 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 183-134 chr6 78187238 78187349 + 2 NA Intergenic L1MA3|LINE|L1 352016 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 207-100 chr16 72514394 72514558 + 2 NA intron (NR_159371, intron 3 of 5) L1MB7|LINE|L1 150494 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 439-95 chr14 98244951 98245258 + 2 NA Intergenic Intergenic -266980 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 284-322 chr5 54241222 54241489 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 69218 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 442-131 chr2 63209469 63209773 + 2 NA intron (NR_148705, intron 13 of 16) L1M8|LINE|L1 -90079 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 574-75 chr2 66771034 66771430 + 2 NA Intergenic Intergenic -68005 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 375-408 chr8 89430860 89431060 + 2 NA Intergenic L1MEd|LINE|L1 326751 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 229-106 chr14 22189830 22190034 + 2 NA Intergenic Intergenic 242821 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 795-4 chr1 86610221 86610755 + 2 NA intron (NR_135837, intron 4 of 4) L1M5|LINE|L1 -23788 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 432-258 chr6 147743578 147743956 + 2 NA Intergenic Intergenic 235077 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 336-589 chr9 119584708 119584977 + 2 NA Intergenic L1M8|LINE|L1 -215407 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 310-199 chr18 33830576 33830759 + 2 NA Intergenic L1MCa|LINE|L1 217945 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 331-303 chr2 212560570 212560801 + 2 NA Intergenic Intergenic -21883 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 385-66 chr12 27315334 27315609 + 2 NA intron (NM_015000, intron 9 of 13) intron (NM_015000, intron 9 of 13) -17365 NM_001248002 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 282-231 chr2 149829924 149830200 + 2 NA intron (NR_145421, intron 2 of 4) L1MCa|LINE|L1 29129 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 446-181 chr3 34607214 34607504 + 2 NA Intergenic L1PA16|LINE|L1 786664 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 347-174 chr17 65552504 65552681 + 2 NA intron (NM_001363813, intron 2 of 9) intron (NM_001363813, intron 2 of 9) 9056 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 234-288 chr4 145036805 145036972 + 2 NA intron (NM_001256710, intron 4 of 5) L1ME3B|LINE|L1 60494 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 196-26 chr10 27626685 27626840 + 2 NA Intergenic Intergenic -117853 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 240-164 chr16 6885919 6886057 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 112179 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 292-189 chr18 79256626 79256863 + 2 NA intron (NM_198531, intron 12 of 29) intron (NM_198531, intron 12 of 29) -139186 NM_172388 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 513-120 chr2 4320869 4321239 + 2 NA Intergenic L1P4|LINE|L1 335168 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 442-303 chr8 136473014 136473288 + 2 NA Intergenic Intergenic -57647 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 185-216 chrX 34059436 34059608 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 72808 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 364-241 chr2 222139460 222139703 + 2 NA Intergenic Intergenic -158566 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 463-185 chr3 53676169 53676543 + 2 NA intron (NM_000720, intron 8 of 48) intron (NM_000720, intron 8 of 48) 170063 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 290-46 chr10 34902203 34902403 + 2 NA Intergenic L1MEa|LINE|L1 86535 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 379-177 chr2 189978076 189978291 + 2 NA Intergenic L1PA17|LINE|L1 84546 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 279-95 chr13 89376595 89376869 + 2 NA Intergenic Intergenic 123777 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 235-40 chr10 55931591 55931819 + 2 NA Intergenic L1M4|LINE|L1 -303763 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 453-107 chr2 23665992 23666281 + 2 NA intron (NM_052920, intron 5 of 13) L2a|LINE|L2 260987 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 508-257 chr9 35878780 35879126 + 2 NA Intergenic L1MEc|LINE|L1 -8552 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 138-14 chr11 113525963 113526056 + 2 NA Intergenic L1M7|LINE|L1 -50611 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 306-40 chr1 199236825 199237022 + 2 NA intron (NR_147896, intron 3 of 3) L1MB4|LINE|L1 88325 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 242-320 chr5 121500924 121501089 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 178456 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 396-135 chr18 57184606 57184930 + 2 NA Intergenic AluJo|SINE|Alu -13574 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 491-46 chr12 17711657 17712062 + 2 NA Intergenic L1MA4|LINE|L1 38560 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 496-244 chr6 151830546 151830875 + 2 NA intron (NM_001328100, intron 1 of 6) intron (NM_001328100, intron 1 of 6) 21603 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 342-469 chr6 141040043 141040250 + 2 NA Intergenic MER61C|LTR|ERV1 356332 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 275-377 chr9 13848349 13848621 + 2 NA Intergenic Intergenic -79486 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 380-180 chr2 66154997 66155298 + 2 NA Intergenic L1MA4A|LINE|L1 203181 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 193-6 chr1 61682381 61682537 + 2 NA intron (NM_032027, intron 6 of 6) intron (NM_032027, intron 6 of 6) 28217 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 278-161 chr17 71399152 71399342 + 2 NA Intergenic Intergenic -197068 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 198-134 chr2 133794297 133794448 + 2 NA Intergenic L1MC3|LINE|L1 -225909 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 312-473 chr7 20424529 20424767 + 2 NA Intergenic MLT2D|LTR|ERVL -92886 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 308-75 chr10 125685925 125686130 + 2 NA intron (NR_033848, intron 1 of 4) LTR33|LTR|ERVL 2784 NR_033848 283038 Hs.144911 NR_033848 ENSG00000228021 LOC283038 - uncharacterized LOC283038 ncRNA 235-299 chr5 173999597 173999796 + 2 NA intron (NM_001144954, intron 2 of 4) intron (NM_001144954, intron 2 of 4) 10526 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 274-389 chr8 87716274 87716411 + 2 NA Intergenic Intergenic 157673 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 267-97 chr13 86874144 86874352 + 2 NA Intergenic Intergenic -37672 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 217-61 chr11 24767790 24767956 + 2 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 270820 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 645-105 chr6 44597569 44598061 + 2 NA Intergenic L1ME4b|LINE|L1 -45934 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 309-5 chr1 55936326 55936578 + 2 NA intron (NR_147162, intron 1 of 2) MIR|SINE|MIR 8511 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 263-321 chr5 35423796 35424002 + 2 NA Intergenic L1MEd|LINE|L1 -193412 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 497-310 chrX 134284863 134285219 + 2 NA Intergenic MLT2B1|LTR|ERVL 47828 NM_001353453 347475 Hs.679431 NM_001101357 ENSG00000203952 CCDC160 - coiled-coil domain containing 160 protein-coding 267-430 chr8 122578150 122578348 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -9605 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 605-46 chr19 36537714 36538218 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -9695 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 229-209 chr2 176161478 176161632 + 2 NA intron (NM_006898, intron 1 of 3) intron (NM_006898, intron 1 of 3) 4248 NM_006898 3232 Hs.93574 NM_006898 ENSG00000128652 HOXD3 HOX1D|HOX4|HOX4A|Hox-4.1 homeobox D3 protein-coding 213-108 chr16 61762160 61762340 + 2 NA intron (NM_001796, intron 8 of 11) L1MD2|LINE|L1 274188 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 177-165 chr8 137786962 137787072 + 2 NA Intergenic Intergenic 296528 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 516-52 chr12 87296098 87296566 + 2 NA Intergenic L1ME1|LINE|L1 -34407 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 339-480 chr5 170979107 170979385 + 2 NA intron (NM_022897, intron 14 of 27) L1ME3C|LINE|L1 117228 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 724-59 chr4 83811955 83812513 + 2 NA Intergenic Intergenic 276126 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 254-71 chr12 16685172 16685398 + 2 NA Intergenic Intergenic -77071 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 226-254 chr4 56053514 56053707 + 2 NA Intergenic Intergenic 104665 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 150-86 chr4 184942545 184942657 + 2 NA Intergenic Intergenic -4161 NR_039660 100616111 NR_039660 ENSG00000263458 MIR4455 - microRNA 4455 ncRNA 276-292 chr3 57311796 57311966 + 2 NA intron (NM_001366028, intron 66 of 73) intron (NM_001366028, intron 66 of 73) -19196 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 268-91 chr12 59485166 59485402 + 2 NA Intergenic L1MC4|LINE|L1 -110745 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 329-579 chr8 100731590 100731810 + 2 NA Intergenic Intergenic -9612 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 535-185 chr4 95431798 95432143 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 117003 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 407-218 chr4 36444454 36444727 + 2 NA Intergenic Intergenic -18162 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 627-119 chr8 107067055 107067482 + 2 NA Intergenic Intergenic 269247 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 651-103 chr6 124914380 124914727 + 2 NA intron (NR_026876, intron 6 of 6) L1MB3|LINE|L1 -47992 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 193-208 chr8 137002896 137003068 + 2 NA Intergenic Intergenic 410606 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 586-112 chr4 57656683 57657091 + 2 NA Intergenic Intergenic 231015 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 181-18 chr10 69070783 69070892 + 2 NA Intergenic Intergenic -16766 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 400-47 chr11 15866797 15867131 + 2 NA Intergenic L1ME3|LINE|L1 102657 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 633-72 chr2 227250594 227251113 + 2 NA intron (NM_000091, intron 9 of 51) A-rich|Low_complexity|Low_complexity 74311 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 235-75 chr12 6049743 6049923 + 2 NA intron (NM_000552, intron 16 of 51) L2b|LINE|L2 -9650 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 375-159 chr16 78326699 78327024 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 227207 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 294-78 chr12 30413888 30414156 + 2 NA Intergenic Intergenic 263222 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 530-68 chr14 33376782 33377262 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -331915 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 312-416 chr5 67320780 67321068 + 2 NA Intergenic Intergenic -124125 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 277-405 chr8 61441475 61441634 + 2 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 153584 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 266-308 chr4 161180159 161180317 + 2 NA Intergenic Intergenic -842495 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 169-113 chr7 9543152 9543285 + 2 NA Intergenic Intergenic -91052 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 559-9 chr1 226913194 226913561 + 2 NA Intergenic Intergenic -26917 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 822-60 chr8 87036863 87037316 + 2 NA intron (NM_173538, intron 4 of 10) HAL1|LINE|L1 170674 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 177-39 chr12 115019977 115020125 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -335876 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 583-162 chr8 84671596 84672048 + 2 NA intron (NM_001354308, intron 3 of 9) THE1B-int|LTR|ERVL-MaLR -34105 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 227-164 chr2 56647385 56647533 + 2 NA Intergenic Intergenic -461689 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 258-286 chr4 46457075 46457264 + 2 NA Intergenic L1MA4|LINE|L1 -67041 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 214-14 chr1 80766907 80767100 + 2 NA Intergenic Intergenic 125716 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 286-438 chr7 158224435 158224666 + 2 NA intron (NM_001308267, intron 2 of 21) L1MD1|LINE|L1 308263 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 404-22 chr1 183468358 183468652 + 2 NA intron (NR_040063, intron 3 of 4) FLAM_A|SINE|Alu 3477 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 217-296 chr5 62917554 62917735 + 2 NA Intergenic Intergenic 338825 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 184-92 chr2 78363472 78363618 + 2 NA Intergenic Intergenic -72814 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 305-243 chr2 33607736 33608031 + 2 NA Intergenic Intergenic -8521 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 486-223 chr4 56549343 56549729 + 2 NA intron (NM_001256475, intron 2 of 8) intron (NM_001256475, intron 2 of 8) 18930 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 320-411 chr4 169541504 169541679 + 2 NA intron (NM_001199400, intron 16 of 32) intron (NM_001199400, intron 16 of 32) 70992 NM_012224 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 287-112 chr12 34407395 34407606 + 2 NA Intergenic ALR/Alpha|Satellite|centr 385004 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 369-396 chr8 27003614 27003859 + 2 NA Intergenic ERVL-int|LTR|ERVL 45227 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 299-252 chr20 15229337 15229586 + 2 NA intron (NM_001033087, intron 1 of 13) intron (NM_001033087, intron 1 of 13) 32621 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 757-2 chr1 114037553 114038031 + 2 NA Intergenic MER50|LTR|ERV1 58318 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 317-31 chr1 192430167 192430476 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 113329 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 314-18 chr1 81275804 81276038 + 2 NA Intergenic Intergenic -30271 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 338-109 chr11 99811168 99811370 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 255124 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 370-15 chr1 152710069 152710284 + 2 NA TTS (NM_178356) TTS (NM_178356) 1129 NM_178356 199834 Hs.447955 NM_178356 ENSG00000187170 LCE4A LEP8|SPRL4A late cornified envelope 4A protein-coding 423-190 chr4 33541103 33541372 + 2 NA Intergenic Intergenic 498656 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 257-197 chr2 83886609 83886820 + 2 NA Intergenic MIR|SINE|MIR 363900 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 514-251 chr6 68644676 68645069 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 9590 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 414-103 chr16 5656259 5656639 + 2 NA Intergenic L1MA10|LINE|L1 23982 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 353-388 chr4 124926289 124926609 + 2 NA Intergenic Intergenic -213717 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 267-258 chr3 85737091 85737301 + 2 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 10714 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 305-165 chr15 26908809 26909001 + 2 NA intron (NM_001165037, intron 6 of 10) intron (NM_001165037, intron 6 of 10) 41779 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 345-257 chr2 76294358 76294604 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -583566 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 363-337 chr4 97397231 97397513 + 2 NA intron (NR_102713, intron 1 of 5) intron (NR_102713, intron 1 of 5) 30446 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 351-426 chr6 153063937 153064227 + 2 NA intron (NM_012419, intron 1 of 4) L1MA2|LINE|L1 -61267 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 267-244 chr22 33147322 33147573 + 2 NA Intergenic L1ME3|LINE|L1 38918 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 568-142 chr4 16136432 16136904 + 2 NA Intergenic Intergenic -52645 NM_006017 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 403-34 chr10 104024946 104025270 + 2 NA intron (NM_001304743, intron 17 of 17) intron (NM_001304743, intron 17 of 17) 23078 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 972-4 chr11 59922914 59923666 + 2 NA Intergenic L2|LINE|L2 -19589 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 307-273 chr20 39686192 39686420 + 2 NA Intergenic L1MD1|LINE|L1 -318155 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 248-221 chr20 42674953 42675132 + 2 NA intron (NM_133170, intron 7 of 31) Tigger9b|DNA|TcMar-Tigger -10441 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 334-26 chr1 160735372 160735578 + 2 NA Intergenic Intergenic -3582 NM_001282589 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 150-108 chr8 115712404 115712508 + 2 NA Intergenic Intergenic -43481 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 173-104 chr4 119555296 119555456 + 2 NA intron (NM_033437, intron 7 of 20) intron (NM_033437, intron 7 of 20) 72361 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 694-30 chr13 35439834 35440352 + 2 NA intron (NM_015678, intron 39 of 57) AluSq2|SINE|Alu 36596 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 315-329 chr4 153541 153718 + 2 NA intron (NR_110527, intron 3 of 4) L1MA6|LINE|L1 25508 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 278-378 chr6 122887297 122887551 + 2 NA Intergenic Intergenic 98166 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 441-8 chr1 103832590 103832930 + 2 NA Intergenic L1M1|LINE|L1 82919 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 219-103 chr14 64635314 64635518 + 2 NA Intergenic Intergenic -69008 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 261-125 chr15 92390092 92390276 + 2 NA Intergenic Intergenic -3697 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 232-316 chr5 154696924 154697099 + 2 NA intron (NM_001367715, intron 1 of 17) PRIMA4_LTR|LTR|ERV1 11235 NR_031638 100302284 NR_031638 ENSG00000221552 MIR1303 MIRN1303|hsa-mir-1303 microRNA 1303 ncRNA 426-146 chr2 154395416 154395791 + 2 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 61835 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 508-200 chr6 36280994 36281419 + 2 NA intron (NM_001145717, intron 1 of 7) intron (NM_001145717, intron 1 of 7) 10746 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 340-326 chr20 56102821 56103095 + 2 NA Intergenic L2b|LINE|L2 -97439 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 273-462 chr8 135288841 135289016 + 2 NA intron (NR_120395, intron 2 of 5) intron (NR_120395, intron 2 of 5) 54797 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 229-6 chr1 50296450 50296672 + 2 NA Intergenic Intergenic 126882 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 128-57 chr6 63778523 63778627 + 2 NA intron (NM_001292009, intron 39 of 43) L1ME4c|LINE|L1 -28261 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 360-210 chr2 36406805 36407134 + 2 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 51191 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 279-125 chr16 12646372 12646579 + 2 NA Intergenic Intergenic -73846 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 472-214 chr3 145145823 145146195 + 2 NA Intergenic Intergenic 923176 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 409-201 chr3 99267084 99267433 + 2 NA Intergenic L1ME3Cz|LINE|L1 -365563 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 177-29 chr11 27956676 27956827 + 2 NA Intergenic Intergenic -100064 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 419-131 chr2 22584902 22585111 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 48527 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 219-231 chr3 65283658 65283833 + 2 NA Intergenic LTR16B|LTR|ERVL -595745 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 301-311 chr4 53336040 53336199 + 2 NA intron (NM_152540, intron 2 of 8) intron (NM_152540, intron 2 of 8) 29942 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 478-230 chr5 19037960 19038339 + 2 NA Intergenic Intergenic 848123 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 705-25 chr12 73493468 73494120 + 2 NA Intergenic L1MA7|LINE|L1 334604 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 175-61 chr16 61301028 61301176 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -245336 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 635-106 chr8 56883601 56883999 + 2 NA Intergenic L1ME3D|LINE|L1 110067 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 361-459 chr8 124693514 124693823 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 34805 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 320-320 chr21 15429004 15429316 + 2 NA Intergenic Intergenic -300774 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 202-149 chr21 35249998 35250144 + 2 NA Intergenic Intergenic -200773 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 529-44 chr12 33867827 33868216 + 2 NA Intergenic Intergenic -154475 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 211-16 chr1 178911524 178911659 + 2 NA intron (NM_152663, intron 19 of 19) L1PA16|LINE|L1 -40514 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 260-59 chr10 82830056 82830237 + 2 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -597226 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 281-383 chr6 10087556 10087822 + 2 NA Intergenic Intergenic -316813 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 399-178 chr20 14835053 14835361 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 94311 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 496-94 chr14 88280019 88280353 + 2 NA intron (NM_021161, intron 1 of 6) L2b|LINE|L2 -9275 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 242-350 chr6 126919516 126919696 + 2 NA Intergenic Intergenic -199065 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 477-51 chr11 15605156 15605472 + 2 NA Intergenic Intergenic -38571 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 190-120 chr3 53968345 53968530 + 2 NA Intergenic Intergenic -76578 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 275-70 chr11 99123799 99124041 + 2 NA intron (NM_001243270, intron 1 of 23) L1PA15|LINE|L1 102971 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 293-360 chr5 174590999 174591223 + 2 NA Intergenic Intergenic -133471 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 262-381 chr6 112322169 112322330 + 2 NA Intergenic Intergenic -25081 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 616-112 chr3 163098021 163098479 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat 205051 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 162-28 chr12 75282206 75282298 + 2 NA exon (NM_001355025, exon 17 of 18) exon (NM_001355025, exon 17 of 18) 47512 NR_149000 100130268 Hs.524596 NR_149000 ENSG00000254451 LOC100130268 - uncharacterized LOC100130268 ncRNA 166-24 chr14 25363398 25363493 + 2 NA Intergenic Intergenic -313148 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 182-5 chr1 62066065 62066192 + 2 NA intron (NM_001350145, intron 31 of 43) L2a|LINE|L2 -12658 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 608-44 chr14 86578647 86579074 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -326918 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 330-75 chr10 115800450 115800684 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 394222 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 303-101 chr13 36021326 36021483 + 2 NA intron (NM_001330071, intron 3 of 16) L1MB7|LINE|L1 109978 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 195-164 chr4 58942855 58943005 + 2 NA Intergenic Intergenic -41352 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 210-37 chr10 82089472 82089619 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 143375 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 571-87 chr2 182399780 182400151 + 2 NA intron (NM_005019, intron 1 of 14) L1ME4b|LINE|L1 27083 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 438-117 chr2 54425988 54426229 + 2 NA Intergenic L2|LINE|L2 -30219 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 128 chr1 35509174 35509293 + 2 NA intron (NM_024874, intron 2 of 20) L1MEc|LINE|L1 48170 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 241-383 chr7 158798119 158798335 + 2 NA intron (NM_020728, intron 2 of 21) intron (NM_020728, intron 2 of 21) 31282 NM_020728 57488 Hs.490795 NM_020728 ENSG00000117868 ESYT2 CHR2SYT|E-Syt2|FAM62B extended synaptotagmin 2 protein-coding 313-420 chr5 23318607 23318794 + 2 NA Intergenic L1MC3|LINE|L1 -188909 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 295-414 chr6 103990569 103990774 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 868875 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 966-17 chr3 22028902 22029550 + 2 NA Intergenic HERVL-int|LTR|ERVL 72087 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 434-229 chr5 91859290 91859659 + 2 NA Intergenic L1MC4a|LINE|L1 -476157 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 449-11 chr1 163609595 163610042 + 2 NA Intergenic Intergenic -186627 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 524-267 chr8 122756709 122757112 + 2 NA Intergenic Intergenic -24745 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 299-61 chr10 86318703 86318946 + 2 NA intron (NM_017551, intron 2 of 15) L2a|LINE|L2 47971 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 450-310 chr8 120662212 120662463 + 2 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -98916 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 355-220 chr19 44475633 44475836 + 2 NA 3' UTR (NM_001288762, exon 4 of 4) 3' UTR (NM_001288762, exon 4 of 4) 24788 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 244-103 chr15 25018404 25018584 + 2 NA intron (NR_146177, intron 20 of 147) intron (NR_146177, intron 20 of 147) -13379 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 311-535 chr8 142122316 142122525 + 2 NA Intergenic Intergenic -53919 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 347-546 chr9 40910115 40910395 + 2 NA Intergenic CER|Satellite|Satellite 18837 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 400-121 chr16 78259031 78259356 + 2 NA intron (NM_001291997, intron 4 of 7) L1M5|LINE|L1 159539 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 232-344 chr7 13682990 13683191 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 303424 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 187-56 chr15 79703139 79703273 + 2 NA Intergenic MamRep605|LTR?|LTR? 193791 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 355-346 chr3 181013416 181013747 + 2 NA Intergenic L1MEg|LINE|L1 -23807 NR_046073 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 313-157 chr14 80600357 80600643 + 2 NA intron (NM_152446, intron 19 of 24) L1M4|LINE|L1 341238 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 498-41 chr10 99545708 99546189 + 2 NA Intergenic Intergenic 13006 NM_145285 159296 Hs.243272 NM_145285 ENSG00000119919 NKX2-3 CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3 NK2 homeobox 3 protein-coding 535-207 chr5 146845908 146846263 + 2 NA intron (NM_001271899, intron 2 of 9) MER33|DNA|hAT-Charlie 32700 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 404-184 chr2 211378796 211379026 + 2 NA 3' UTR (NM_005235, exon 28 of 28) 3' UTR (NM_005235, exon 28 of 28) 761340 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 499-217 chr5 178436269 178436575 + 2 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) 153971 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 461-174 chr3 96247423 96247845 + 2 NA Intergenic Intergenic -112330 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 450-171 chr20 60658592 60658883 + 2 NA Intergenic Intergenic 94175 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 296-361 chr5 34987606 34987815 + 2 NA Intergenic LTR8A|LTR|ERV1 58117 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 346-346 chr4 31316508 31316790 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 145505 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 295-142 chr14 101261473 101261688 + 2 NA Intergenic AluY|SINE|Alu 140724 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 124-10 chr11 29205246 29205362 + 2 NA Intergenic Intergenic -389109 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 415-64 chr12 129123843 129124092 + 2 NA intron (NM_133448, intron 5 of 8) MLT2B1|LTR|ERVL 14277 NR_104172 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 558-209 chr8 36591119 36591591 + 2 NA Intergenic Intergenic -193019 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 250-68 chr11 63358836 63359061 + 2 NA Intergenic L1PA12|LINE|L1 -10837 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 328-515 chr6 151521345 151521531 + 2 NA intron (NM_025059, intron 1 of 10) intron (NM_025059, intron 1 of 10) 27421 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 303-33 chr10 25456062 25456301 + 2 NA intron (NM_020752, intron 4 of 10) intron (NM_020752, intron 4 of 10) -195531 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 323-328 chr3 66318037 66318244 + 2 NA intron (NR_028475, intron 5 of 9) L1PA10|LINE|L1 97137 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 498-260 chr7 127192940 127193277 + 2 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -22019 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 339-595 chr8 134052227 134052497 + 2 NA Intergenic Intergenic 165866 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 525-169 chr3 192251241 192251645 + 2 NA intron (NR_046596, intron 1 of 4) L1ME3|LINE|L1 12813 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 459-330 chr9 93214309 93214631 + 2 NA intron (NM_006648, intron 1 of 28) AluSz|SINE|Alu 29540 NM_006648 65268 Hs.654856 NM_006648 ENSG00000165238 WNK2 NY-CO-43|P/OKcl.13|PRKWNK2|SDCCAG43 WNK lysine deficient protein kinase 2 protein-coding 201-251 chr8 141973907 141974049 + 2 NA Intergenic Intergenic -187665 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 267-415 chr8 51053674 51053833 + 2 NA Intergenic Intergenic 755692 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 423-162 chr21 36612253 36612648 + 2 NA Intergenic Intergenic -35881 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 284-179 chr19 32536488 32536630 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -44631 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 315-106 chr12 51555193 51555382 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -35946 NM_014191 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 266-187 chr2 108077877 108078070 + 2 NA Intergenic Intergenic -25218 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 348-30 chr1 182312392 182312732 + 2 NA intron (NR_104175, intron 2 of 2) AluJb|SINE|Alu 1499 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 521-248 chr8 15225889 15226404 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 12285 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 317-85 chr11 70941150 70941401 + 2 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -68907 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 308-402 chr5 152251565 152251850 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 153572 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 638-125 chr5 107167850 107168449 + 2 NA Intergenic Intergenic -157135 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 182-28 chr11 63237270 63237402 + 2 NA Intergenic Intergenic -7684 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 292-68 chr11 21772487 21772776 + 2 NA Intergenic L1MA5|LINE|L1 -420454 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 189-151 chr4 111418770 111418942 + 2 NA Intergenic L1ME2|LINE|L1 -558209 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 252-205 chr2 105495061 105495273 + 2 NA Intergenic Intergenic -56654 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 288-333 chr5 94837806 94837967 + 2 NA intron (NM_001002796, intron 17 of 22) intron (NM_001002796, intron 17 of 22) 219217 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 113-6 chr10 9927956 9928018 + 2 NA Intergenic AluJr|SINE|Alu -130735 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 193-23 chr10 2372161 2372273 + 2 NA Intergenic L1MC3|LINE|L1 -57143 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 336-79 chr10 114175015 114175332 + 2 NA promoter-TSS (NM_153249) promoter-TSS (NM_153249) -953 NR_135815 55088 Hs.159066 NM_018017 ENSG00000165813 CCDC186 C10orf118|CCCP-1|golgin104 coiled-coil domain containing 186 protein-coding 218-206 chr3 29046231 29046394 + 2 NA Intergenic Intergenic 234627 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 259-68 chr11 25462717 25462937 + 2 NA Intergenic L1M4a1|LINE|L1 -726296 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 472-37 chr10 89461183 89461585 + 2 NA intron (NR_120614, intron 1 of 2) intron (NR_120614, intron 1 of 2) 5393 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 247-193 chr2 64900215 64900440 + 2 NA Intergenic AluJo|SINE|Alu 32120 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 357-11 chr1 100722629 100722969 + 2 NA intron (NM_080682, intron 2 of 7) intron (NM_080682, intron 2 of 7) 3057 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 305-264 chr2 103640266 103640564 + 2 NA Intergenic AluJr|SINE|Alu -655986 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 381-335 chr6 92015396 92015769 + 2 NA Intergenic AluSx1|SINE|Alu -325154 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 274-350 chr7 42332668 42332854 + 2 NA Intergenic L1MB8|LINE|L1 -95552 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 188-61 chr15 48704283 48704441 + 2 NA Intergenic Intergenic -58574 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 285-254 chr22 34603015 34603276 + 2 NA Intergenic Intergenic 394771 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 292-164 chr16 64057175 64057375 + 2 NA Intergenic Intergenic 1064788 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 544-32 chr10 65273393 65273764 + 2 NA Intergenic MLT2A1|LTR|ERVL -297847 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 318-64 chr10 58448661 58448846 + 2 NA Intergenic LTR12C|LTR|ERV1 63343 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 776-48 chr5 162593012 162593460 + 2 NA Intergenic MIR|SINE|MIR 525594 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 398-101 chr14 53071852 53072141 + 2 NA intron (NM_030637, intron 6 of 11) MIR|SINE|MIR 81327 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 187 chr1 26943341 26943458 + 2 NA intron (NM_006600, intron 6 of 8) AluJr|SINE|Alu 17069 NM_152365 126695 Hs.188881 NM_152365 ENSG00000175707 KDF1 C1orf172|ECTD12 keratinocyte differentiation factor 1 protein-coding 373-15 chr1 80600430 80600672 + 2 NA intron (NR_125940, intron 2 of 3) L1MB1|LINE|L1 -40736 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 543-115 chr2 34214352 34214708 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 147304 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 243-256 chr20 48008307 48008482 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -18277 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 205-294 chr9 69367559 69367724 + 2 NA intron (NM_001127608, intron 2 of 10) intron (NM_001127608, intron 2 of 10) 38316 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 493-157 chr2 103448263 103448617 + 2 NA Intergenic Intergenic -464011 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 645-122 chr8 83479745 83480366 + 2 NA Intergenic MER92B|LTR|ERV1 76297 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 666-64 chr2 155130026 155130548 + 2 NA Intergenic L1MB8|LINE|L1 431592 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 383-133 chr15 95189025 95189232 + 2 NA Intergenic L1P4|LINE|L1 137972 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 243-444 chr8 69206352 69206524 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -102248 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 682-92 chr6 74481709 74482283 + 2 NA intron (NR_110856, intron 2 of 3) MIR|SINE|MIR 412545 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 286-237 chr2 225287302 225287449 + 2 NA Intergenic Intergenic -112335 NM_001371273 332-134 chr12 129939511 129939813 + 2 NA Intergenic Intergenic -35637 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 443-195 chr3 36185567 36185961 + 2 NA Intergenic Intergenic -194723 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 403-28 chr10 42939234 42939551 + 2 NA Intergenic MER47B|DNA|TcMar-Tigger 42115 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 468-343 chrX 37621978 37622380 + 2 NA intron (NM_198511, intron 1 of 5) intron (NM_198511, intron 1 of 5) 50518 NM_001170331 347404 Hs.521932 NM_198511 ENSG00000147036 LANCL3 - LanC like 3 protein-coding 504-231 chr6 151130876 151131322 + 2 NA Intergenic Intergenic 28424 NR_162145 113219461 NR_162145 MIR12131 - microRNA 12131 ncRNA 309-555 chr8 115937721 115937977 + 2 NA Intergenic Intergenic -268874 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 339-230 chr18 68175031 68175351 + 2 NA Intergenic Intergenic -360369 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 254-430 chr8 137509170 137509400 + 2 NA Intergenic Zaphod3|DNA|hAT-Tip100 -95697 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 164-6 chr1 187461873 187461961 + 2 NA intron (NR_132374, intron 1 of 2) L2|LINE|L2 18289 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 601-144 chr8 59260119 59260529 + 2 NA Intergenic Intergenic 141114 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 342-316 chr3 67687691 67688024 + 2 NA intron (NR_109992, intron 3 of 6) MSTC|LTR|ERVL-MaLR 33160 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 267-315 chr5 9953710 9953924 + 2 NA Intergenic L2c|LINE|L2 -49993 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 292-113 chr12 98222476 98222643 + 2 NA Intergenic Intergenic -227111 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 277-231 chr20 42164220 42164425 + 2 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -521161 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 281-7 chr1 77106474 77106716 + 2 NA intron (NM_005482, intron 10 of 10) intron (NM_005482, intron 10 of 10) 46452 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 243-227 chr2 121008752 121008947 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger 216568 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 340-186 chr16 35782840 35783040 + 2 NA Intergenic ALR/Alpha|Satellite|centr 36388 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 688-112 chr8 140190847 140191399 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -90588 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 263-178 chr19 34954163 34954417 + 2 NA Intergenic L1MB3|LINE|L1 9939 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 323-129 chr13 103338012 103338279 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -87055 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 262-98 chr12 40238499 40238687 + 2 NA intron (NM_198578, intron 5 of 50) intron (NM_198578, intron 5 of 50) 13596 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 358-48 chr10 63919508 63919719 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -397723 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 220-340 chr7 39832271 39832444 + 2 NA Intergenic Intergenic 98789 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 234-56 chr11 30494184 30494334 + 2 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 86234 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 196-256 chr8 119152446 119152614 + 2 NA Intergenic AluSq2|SINE|Alu -55833 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 323-272 chr2 135807522 135807838 + 2 NA intron (NM_002299, intron 8 of 16) AluSx3|SINE|Alu -12511 NR_045486 100507600 Hs.662020 NR_045486 ENSG00000226806 LOC100507600 - uncharacterized LOC100507600 ncRNA 661-51 chr2 133735845 133736274 + 2 NA Intergenic L1ME3|LINE|L1 -167596 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 250-333 chr5 16090967 16091155 + 2 NA exon (NM_001102562, exon 3 of 4) exon (NM_001102562, exon 3 of 4) 88730 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 398-163 chr2 77134318 77134631 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 148509 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 650-93 chr5 29862145 29862539 + 2 NA Intergenic Intergenic -18218 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 319-186 chr17 11383172 11383422 + 2 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) 141874 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 349-367 chr4 42551781 42552034 + 2 NA intron (NM_001105529, intron 16 of 35) intron (NM_001105529, intron 16 of 35) 105198 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 500-69 chr12 70463376 70463712 + 2 NA Intergenic LOR1-int|LTR|ERV1 97254 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 323-536 chr8 61853417 61853654 + 2 NA Intergenic Intergenic -36304 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 306-73 chr11 24047756 24047930 + 2 NA Intergenic Kanga1b|DNA|TcMar-Tc2 -449210 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 403-215 chr4 45403489 45403875 + 2 NA Intergenic MLT2A2|LTR|ERVL -677048 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 391-240 chr3 132511330 132511558 + 2 NA intron (NM_001329126, intron 45 of 56) intron (NM_001329126, intron 45 of 56) -85826 NM_016557 51554 Hs.310512 NM_016557 ENSG00000129048 ACKR4 CC-CKR-11|CCBP2|CCR-11|CCR10|CCR11|CCRL1|CCX CKR|CCX-CKR|CKR-11|PPR1|VSHK1 atypical chemokine receptor 4 protein-coding 516-187 chr4 33774760 33775143 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 264942 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 313-363 chr3 163655734 163656023 + 2 NA Intergenic Intergenic -352577 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 332-110 chr12 5182048 5182269 + 2 NA Intergenic AluSx|SINE|Alu 60993 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 225-49 chr11 3961916 3962075 + 2 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 105933 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 581-183 chr9 76712529 76713017 + 2 NA intron (NM_001308048, intron 7 of 17) intron (NM_001308048, intron 7 of 17) -20358 NM_001308049 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 532-89 chr16 85833182 85833538 + 2 NA Intergenic L1MC4|LINE|L1 33665 NM_001318797 1327 Hs.433419 NM_001861 ENSG00000131143 COX4I1 COX IV-1|COX4|COX4-1|COXIV|COXIV-1 cytochrome c oxidase subunit 4I1 protein-coding 537-31 chr10 109708612 109709000 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 214440 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 307-129 chr14 26484695 26484986 + 2 NA intron (NM_001366393, intron 2 of 4) L2|LINE|L2 68590 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 233-134 chr18 134044 134236 + 2 NA Intergenic Intergenic -21801 NR_107045 102466878 NR_107045 ENSG00000277521 MIR8078 hsa-mir-8078 microRNA 8078 ncRNA 303-60 chr10 128927115 128927357 + 2 NA Intergenic Intergenic 14403 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 346-472 chr7 112432608 112432816 + 2 NA intron (NM_001197080, intron 1 of 11) MIRb|SINE|MIR 9568 NM_001197080 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 338-274 chr2 133920577 133920850 + 2 NA Intergenic AluSx1|SINE|Alu -199222 NM_001371457 349-82 chr10 104208839 104209073 + 2 NA intron (NM_025145, intron 5 of 37) intron (NM_025145, intron 5 of 37) 9927 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 282-64 chr11 13870396 13870653 + 2 NA promoter-TSS (NR_149109) promoter-TSS (NR_149109) 92 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 229-413 chr9 38304048 38304211 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -88573 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 454-74 chr12 72734174 72734612 + 2 NA Intergenic Intergenic -424797 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 411-279 chr7 127099302 127099640 + 2 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) -41287 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 290-47 chr10 41866381 41866622 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 501544 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 280-59 chr10 90400514 90400744 + 2 NA Intergenic Intergenic 140176 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 264-196 chr2 40702247 40702424 + 2 NA Intergenic Intergenic -189900 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 244-262 chr4 63659145 63659318 + 2 NA Intergenic L1MC4|LINE|L1 750219 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 349-377 chr4 89346809 89347002 + 2 NA Intergenic L1M3f|LINE|L1 -39105 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 651-16 chr10 31786299 31786933 + 2 NA Intergenic AluJr|SINE|Alu 122310 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 415-17 chr1 185572346 185572655 + 2 NA intron (NR_110793, intron 2 of 3) MER5B|DNA|hAT-Charlie 55988 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 324-201 chr16 51916498 51916725 + 2 NA Intergenic Intergenic 154092 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 283-119 chr13 38512496 38512669 + 2 NA Intergenic Intergenic -55142 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 504-191 chr4 75409357 75409780 + 2 NA Intergenic L1MA5A|LINE|L1 55492 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 254-163 chr18 28351818 28351985 + 2 NA Intergenic Intergenic -174771 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 187-92 chr20 3822449 3822558 + 2 NA intron (NM_018347, intron 2 of 2) MIR|SINE|MIR 1956 NM_018347 55317 Hs.104806 NM_018347 ENSG00000125843 AP5S1 C20orf29 adaptor related protein complex 5 subunit sigma 1 protein-coding 480-215 chr4 64013447 64013771 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 395841 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 197-182 chr6 47161235 47161363 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -118967 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 311-404 chr5 39820021 39820257 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -232152 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 185-10 chr1 179382812 179382962 + 2 NA intron (NR_073544, intron 7 of 25) intron (NR_073544, intron 7 of 25) 16843 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 320-477 chr6 39499016 39499303 + 2 NA intron (NM_001289021, intron 12 of 21) L2b|LINE|L2 -67769 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 231-242 chr3 193424010 193424191 + 2 NA intron (NM_032279, intron 25 of 29) L1MA6|LINE|L1 -45347 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 368-489 chr9 116068726 116068984 + 2 NA Intergenic Intergenic -84936 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 548-103 chr2 2405415 2405712 + 2 NA Intergenic HAL1|LINE|L1 -74288 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 258-4 chr1 46960779 46960952 + 2 NA promoter-TSS (NM_001320289) promoter-TSS (NM_001320289) -499 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 572-132 chr5 2202933 2203290 + 2 NA Intergenic Intergenic 109090 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 275-279 chr4 156620061 156620304 + 2 NA Intergenic Intergenic 351617 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 321-192 chr15 54732903 54733213 + 2 NA Intergenic Intergenic -323689 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 307-437 chr6 156125405 156125606 + 2 NA Intergenic Intergenic 178708 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 465-236 chr5 105227956 105228282 + 2 NA Intergenic Intergenic 128645 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 595-55 chr15 56994386 56994824 + 2 NA intron (NM_207038, intron 3 of 19) L1MDa|LINE|L1 75160 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 375-118 chr13 112046971 112047344 + 2 NA intron (NR_120392, intron 1 of 3) L1M4a1|LINE|L1 -19992 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 735-40 chr2 37681932 37682546 + 2 NA Intergenic MIR3|SINE|MIR -9704 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 241-310 chr5 102443536 102443713 + 2 NA intron (NM_173488, intron 6 of 13) intron (NM_173488, intron 6 of 13) 55377 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 382-40 chr10 73983228 73983477 + 2 NA Intergenic L1MEc|LINE|L1 -14762 NM_014000 7414 Hs.643896 NM_003373 ENSG00000035403 VCL CMD1W|CMH15|HEL114|MV|MVCL vinculin protein-coding 415-155 chr20 15288589 15288922 + 2 NA intron (NM_001351663, intron 6 of 17) MLT2B2|LTR|ERVL 91915 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 324-120 chr12 49936428 49936649 + 2 NA Intergenic L2b|LINE|L2 -14203 NM_000486 359 Hs.130730 NM_000486 ENSG00000167580 AQP2 AQP-CD|WCH-CD aquaporin 2 protein-coding 539-40 chr11 109240610 109241096 + 2 NA Intergenic L3|LINE|CR1 -181337 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 491-9 chr1 214046674 214047132 + 2 NA Intergenic Intergenic 58370 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 331-525 chr8 71507921 71508154 + 2 NA intron (NM_001370334, intron 2 of 19) intron (NM_001370334, intron 2 of 19) 39667 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 149-42 chr17 59359660 59359771 + 2 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) -6368 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 258-197 chr2 116565047 116565235 + 2 NA Intergenic Intergenic 1221326 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 533-158 chr4 66897668 66898050 + 2 NA Intergenic AluYm1|SINE|Alu 524141 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 230-292 chr5 38218297 38218475 + 2 NA Intergenic Intergenic -40173 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 436-287 chr7 64701755 64702042 + 2 NA intron (NM_016220, intron 6 of 6) intron (NM_016220, intron 6 of 6) 22834 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 249-30 chr1 217254725 217254964 + 2 NA Intergenic L1M6|LINE|L1 -117142 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 354-271 chr21 31042538 31042740 + 2 NA Intergenic Intergenic -4163 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 337-79 chr11 28428805 28429111 + 2 NA Intergenic Intergenic 48590 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 281-5 chr1 76011223 76011485 + 2 NA promoter-TSS (NR_125939) promoter-TSS (NR_125939) 30 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 450-164 chr20 9995675 9996044 + 2 NA intron (NR_109861, intron 1 of 1) intron (NR_109861, intron 1 of 1) 9526 NR_109861 101929371 Hs.619265 NR_109861 PARAL1 - PPARG activating RBM14 associated lncRNA 1 ncRNA 396-373 chr9 77550604 77550890 + 2 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 97575 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 292-154 chr15 92388094 92388268 + 2 NA Intergenic Intergenic -5700 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 204-162 chr2 226174814 226174991 + 2 NA intron (NR_046102, intron 5 of 6) intron (NR_046102, intron 5 of 6) 32108 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 336-500 chr6 164559076 164559273 + 2 NA Intergenic L1MC4a|LINE|L1 262889 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 302-152 chr16 13052198 13052489 + 2 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 150745 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 337-393 chr4 47418395 47418625 + 2 NA intron (NM_000812, intron 8 of 8) MLT2C2|LTR|ERVL 45192 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 253-80 chr11 90615569 90615735 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -59795 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 499-48 chr11 102792830 102793240 + 2 NA intron (NM_001145938, intron 6 of 9) MER63B|DNA|hAT-Blackjack 5125 NM_001145938 4312 Hs.83169 NM_002421 ENSG00000196611 MMP1 CLG|CLGN matrix metallopeptidase 1 protein-coding 362-186 chr17 27816142 27816415 + 2 NA Intergenic L2c|LINE|L2 -15749 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 301-180 chr18 70904790 70905030 + 2 NA Intergenic Intergenic -253956 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 331-30 chr1 191117024 191117250 + 2 NA Intergenic Intergenic 111361 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 468-244 chr5 40999951 41000231 + 2 NA intron (NM_173489, intron 39 of 41) intron (NM_173489, intron 39 of 41) 71251 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 223-378 chrX 65432745 65432910 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -55908 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 330-240 chr19 36875030 36875252 + 2 NA intron (NM_001242476, intron 3 of 3) intron (NM_001242476, intron 3 of 3) 23490 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 285-420 chr8 106518472 106518658 + 2 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 70641 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 202-17 chr1 206609666 206609865 + 2 NA intron (NM_006893, intron 2 of 14) intron (NM_006893, intron 2 of 14) 2700 NM_006893 1939 Hs.497581 NM_006893 ENSG00000143486 EIF2D HCA56|LGTN eukaryotic translation initiation factor 2D protein-coding 325-538 chr8 60892347 60892539 + 2 NA Intergenic Intergenic 75305 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 300-482 chr8 139169435 139169634 + 2 NA Intergenic Intergenic -255493 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 323-414 chr5 61846146 61846411 + 2 NA Intergenic MLT-int|LTR|ERVL-MaLR -110580 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 311-537 chr8 144606812 144607020 + 2 NA intron (NM_001308208, intron 1 of 10) L1ME3A|LINE|L1 -1221 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 398-292 chr6 56158633 56158990 + 2 NA intron (NM_030820, intron 9 of 29) intron (NM_030820, intron 9 of 29) -67149 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 294-497 chr9 78060840 78061013 + 2 NA Intergenic L1ME3Cz|LINE|L1 -29115 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 311-162 chr15 67917919 67918127 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -77978 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 460-121 chr18 71895824 71896194 + 2 NA Intergenic L1PA16|LINE|L1 -113783 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 321-249 chr18 47695676 47695989 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 234827 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 315-259 chr2 137536170 137536392 + 2 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 391651 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 714-35 chr2 34016926 34017505 + 2 NA intron (NR_126403, intron 4 of 5) L1PB1|LINE|L1 -50011 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 191-30 chr11 39894920 39895084 + 2 NA Intergenic Intergenic 398128 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 552-193 chr6 164325113 164325531 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 496741 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 138-67 chr5 40514867 40514947 + 2 NA Intergenic Intergenic -165008 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 376-168 chr2 14620355 14620648 + 2 NA Intergenic Intergenic -12216 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 470-176 chr3 74129863 74130321 + 2 NA Intergenic Intergenic 320848 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 203-105 chr2 19693230 19693389 + 2 NA Intergenic MER45C|DNA|hAT-Tip100 -175545 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 372-66 chr11 9978953 9979234 + 2 NA intron (NM_030962, intron 13 of 39) MIRb|SINE|MIR 139951 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 218-94 chr14 59298257 59298455 + 2 NA intron (NM_001270520, intron 3 of 24) intron (NM_001270520, intron 3 of 24) 34915 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 533-7 chr1 175428071 175428413 + 2 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -235255 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 484-251 chr7 86246538 86246833 + 2 NA Intergenic Intergenic -397224 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 313-51 chr10 69243577 69243873 + 2 NA intron (NM_025130, intron 7 of 17) AluSx|SINE|Alu -11235 NR_120648 101928994 Hs.562925 NR_120648 ENSG00000229261 LOC101928994 - uncharacterized LOC101928994 ncRNA 762-64 chr7 27981105 27981614 + 2 NA intron (NM_175061, intron 2 of 4) L1MC5|LINE|L1 -199098 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 349-194 chr16 47543788 47544043 + 2 NA intron (NM_001031835, intron 7 of 31) L1PA6|LINE|L1 82584 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 366-336 chr5 12845385 12845582 + 2 NA Intergenic L1M2c|LINE|L1 177624 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 287-275 chr4 33706264 33706532 + 2 NA Intergenic L1MB1|LINE|L1 333495 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 274-410 chr9 27656417 27656610 + 2 NA Intergenic Intergenic -82647 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 112-2 chr1 104416427 104416501 + 2 NA Intergenic Intergenic 343441 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 582-6 chr1 171101612 171102097 + 2 NA promoter-TSS (NR_031627) promoter-TSS (NR_031627) -48 NR_031627 100302178 NR_031627 ENSG00000221390 MIR1295A MIR1295|MIRN1295|hsa-mir-1295|hsa-mir-1295a|mir-1295a microRNA 1295a ncRNA 301-310 chr4 45689894 45690157 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 434029 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 673-15 chr10 54286179 54286661 + 2 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -199810 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 585-20 chr10 130995226 130995622 + 2 NA Intergenic L1M4a1|LINE|L1 -32756 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 354-319 chr4 41816952 41817172 + 2 NA Intergenic Intergenic 65549 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 396-119 chr16 5720823 5721127 + 2 NA Intergenic L1MB8|LINE|L1 88508 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 485-140 chr2 105975628 105976088 + 2 NA Intergenic Intergenic -89830 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 473-88 chr14 70048047 70048351 + 2 NA intron (NM_033262, intron 7 of 7) intron (NM_033262, intron 7 of 7) 32018 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 385-351 chr7 33481254 33481542 + 2 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 351834 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 301-197 chr2 36605752 36606039 + 2 NA Intergenic Intergenic -7727 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 327-51 chr10 58888405 58888655 + 2 NA Intergenic Intergenic -110988 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 330-529 chr8 116275913 116276125 + 2 NA intron (NR_046215, intron 1 of 13) L1PA16|LINE|L1 49040 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 488-88 chr15 24002000 24002367 + 2 NA intron (NR_126392, intron 3 of 5) ERVL-B4-int|LTR|ERVL 27036 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 450-257 chr6 47874123 47874411 + 2 NA Intergenic Intergenic 87199 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 573-79 chr18 52982262 52982710 + 2 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -254615 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 168-96 chr6 77239603 77239700 + 2 NA Intergenic Intergenic 224371 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 125-9 chr11 88451732 88451813 + 2 NA Intergenic Intergenic -52804 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 555-167 chr5 117811230 117811608 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 81058 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 343-371 chr3 185038377 185038562 + 2 NA intron (NM_001009921, intron 45 of 46) L1PA15|LINE|L1 114591 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 321-475 chr5 122738036 122738246 + 2 NA Intergenic AluSg|SINE|Alu -7581 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 333-13 chr1 57644698 57644891 + 2 NA intron (NM_001353980, intron 4 of 5) MLT2F|LTR|ERVL -215787 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 528-99 chr15 88183392 88183845 + 2 NA intron (NM_001007156, intron 4 of 15) intron (NM_001007156, intron 4 of 15) 22356 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 193-169 chr5 166778969 166779126 + 2 NA Intergenic Intergenic 147323 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 480-136 chr2 21844530 21844994 + 2 NA Intergenic Intergenic -134110 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 312-128 chr13 74421050 74421344 + 2 NA intron (NR_047005, intron 2 of 4) intron (NR_047005, intron 2 of 4) 2024 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 512-71 chr12 133155799 133156265 + 2 NA exon (NM_015394, exon 5 of 5) exon (NM_015394, exon 5 of 5) 25405 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 163-126 chr8 136029980 136030078 + 2 NA Intergenic Intergenic -500769 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 422-87 chr14 73442608 73442935 + 2 NA intron (NM_001005743, intron 1 of 12) L1ME1|LINE|L1 15809 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 462-197 chr4 37165858 37166252 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 75936 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 366-196 chr2 58843806 58844085 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 323192 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 454-275 chr6 75087445 75087771 + 2 NA exon (NM_004370, exon 65 of 66) exon (NM_004370, exon 65 of 66) 41174 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 297-456 chr8 33653805 33654042 + 2 NA Intergenic Intergenic -53817 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 340-177 chr15 89030288 89030612 + 2 NA Intergenic L1ME5|LINE|L1 -58006 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 290-134 chr14 66670878 66671088 + 2 NA intron (NM_001024218, intron 1 of 21) Cheshire|DNA|hAT-Charlie 163576 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 354-118 chr13 63275634 63275917 + 2 NA intron (NR_126409, intron 2 of 6) L1M2|LINE|L1 52319 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 256-218 chr2 150430035 150430278 + 2 NA Intergenic Intergenic 57539 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 364-255 chr21 23603473 23603746 + 2 NA Intergenic Intergenic -218774 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 335-226 chr2 360901 361146 + 2 NA Intergenic Intergenic 44739 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 271-382 chr6 71545872 71546014 + 2 NA Intergenic Intergenic 124916 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 323-141 chr14 53899001 53899253 + 2 NA Intergenic MIR|SINE|MIR 49357 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 201-174 chr4 44345060 44345198 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 103680 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 249-238 chr20 24137076 24137317 + 2 NA Intergenic Intergenic -62571 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 321-168 chr14 51231652 51231858 + 2 NA Intergenic L1M4b|LINE|L1 -8492 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 538-23 chr10 9488681 9488975 + 2 NA Intergenic L1P1|LINE|L1 -193235 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 320-53 chr10 25280520 25280716 + 2 NA intron (NM_020752, intron 2 of 10) L1MEd|LINE|L1 -104342 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 347-126 chr14 48756487 48756801 + 2 NA Intergenic L1MC5a|LINE|L1 829736 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 654-133 chrX 152026664 152027141 + 2 NA Intergenic Intergenic -52226 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 601-79 chr2 124626142 124626592 + 2 NA intron (NM_130773, intron 12 of 23) L1PA10|LINE|L1 601080 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 400-267 chr4 152180454 152180828 + 2 NA Intergenic Intergenic 79823 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 234-102 chr14 72267529 72267700 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -249206 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 341-279 chr2 201289629 201289931 + 2 NA exon (NM_001127391, exon 13 of 15) exon (NM_001127391, exon 13 of 15) 29244 NM_033356 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 250-12 chr1 88284666 88284864 + 2 NA Intergenic MER20|DNA|hAT-Charlie -399379 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 236-297 chr5 141939626 141939768 + 2 NA 3' UTR (NM_001142603, exon 13 of 13) 3' UTR (NM_001142603, exon 13 of 13) 15826 NM_014773 9812 Hs.210532 NM_014773 ENSG00000081791 DELE1 DELE|KIAA0141 DAP3 binding cell death enhancer 1 protein-coding 313-122 chr13 56465006 56465212 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -675809 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 376-25 chr1 205561011 205561363 + 2 NA intron (NR_152721, intron 1 of 3) L1MA5|LINE|L1 -7827 NM_181644 148808 Hs.567714 NM_181644 ENSG00000174514 MFSD4A MFSD4|UNQ3064 major facilitator superfamily domain containing 4A protein-coding 257-340 chr5 173369694 173369911 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 22347 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 457-87 chr16 83088516 83088938 + 2 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -98429 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 206-289 chr9 134532542 134532699 + 2 NA Intergenic L1MB4|LINE|L1 -109185 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 266-231 chr22 47986377 47986591 + 2 NA Intergenic L1MB7|LINE|L1 -287880 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 316-3 chr1 35334998 35335233 + 2 NA intron (NM_001350140, intron 3 of 27) L1ME3E|LINE|L1 30962 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 299-178 chr18 25623293 25623519 + 2 NA Intergenic L1MB1|LINE|L1 -271240 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 300-322 chr4 61353199 61353482 + 2 NA intron (NM_001371342, intron 1 of 20) (ATAC)n|Simple_repeat|Simple_repeat 151168 NM_001371342 214-114 chr16 13694790 13694950 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -225287 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 553-162 chr3 190575073 190575428 + 2 NA intron (NR_157352, intron 3 of 10) intron (NR_157352, intron 3 of 10) 61165 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 374-316 chr5 104641505 104641848 + 2 NA Intergenic Intergenic -457798 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 260-196 chr19 58170807 58171060 + 2 NA Intergenic Intergenic -12056 NM_001278734 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 277-78 chr11 88608845 88609116 + 2 NA intron (NM_001143831, intron 3 of 8) intron (NM_001143831, intron 3 of 8) 104404 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 391-221 chr22 33238728 33238950 + 2 NA Intergenic L1MEd|LINE|L1 130310 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 320-345 chr3 53339178 53339403 + 2 NA intron (NM_001290205, intron 3 of 10) intron (NM_001290205, intron 3 of 10) -6163 NR_145715 109617024 NR_145715 ENSG00000207109 SNORD38C - small nucleolar RNA, C/D box 38C snoRNA 233-62 chr11 82433626 82433816 + 2 NA Intergenic Intergenic -29808 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 466-35 chr10 107783812 107784167 + 2 NA Intergenic L1P4a|LINE|L1 285304 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 432-153 chr20 22744388 22744750 + 2 NA Intergenic Intergenic -59225 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 229-294 chr5 28028315 28028491 + 2 NA Intergenic L1M1|LINE|L1 259262 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 372-118 chr12 95918553 95918844 + 2 NA intron (NM_182496, intron 3 of 15) intron (NM_182496, intron 3 of 15) 23916 NM_182496 120935 Hs.210377 NM_182496 ENSG00000165972 CCDC38 - coiled-coil domain containing 38 protein-coding 278-171 chr18 11347842 11348075 + 2 NA Intergenic L1MA9|LINE|L1 -106520 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 454-203 chr3 56574913 56575283 + 2 NA intron (NR_148375, intron 7 of 17) L1MB3|LINE|L1 17923 NM_001141947 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 196-253 chr8 109807433 109807577 + 2 NA Intergenic Intergenic -115714 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 302-220 chr2 117428117 117428268 + 2 NA Intergenic L1MC1|LINE|L1 -386499 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 470-101 chr18 3226804 3227115 + 2 NA Intergenic Intergenic -6851 NM_003803 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 309-54 chr10 72768848 72769104 + 2 NA intron (NR_073062, intron 3 of 9) AluJr4|SINE|Alu 47947 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 481-129 chr19 51943177 51943535 + 2 NA intron (NM_001031721, intron 5 of 5) MER44B|DNA|TcMar-Tigger -5778 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 1055-9 chr2 48198034 48199071 + 2 NA Intergenic LTR85a|LTR|Gypsy? -116130 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 374-65 chr12 28939927 28940235 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -209197 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 507-280 chrUn_KI270438v1 1589 1942 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 431-280 chr7 134090728 134091061 + 2 NA Intergenic MER41-int|LTR|ERV1 -36446 NM_001365700 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 142-63 chr6 20242827 20242936 + 2 NA Intergenic L1MD2|LINE|L1 -30412 NR_073465 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 294-283 chr3 14747836 14748097 + 2 NA intron (NM_001184957, intron 12 of 16) L1M4|LINE|L1 63448 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 247-350 chr5 166672809 166673001 + 2 NA Intergenic Intergenic 253465 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 542-46 chr12 49876380 49876766 + 2 NA intron (NM_012306, intron 11 of 11) AluY|SINE|Alu 27327 NM_012306 23017 Hs.567424 NM_012306 ENSG00000135472 FAIM2 LFG|LFG2|NGP35|NMP35|TMBIM2 Fas apoptotic inhibitory molecule 2 protein-coding 195-71 chr15 58040314 58040452 + 2 NA intron (NM_170696, intron 1 of 11) intron (NM_170696, intron 1 of 11) -24842 NR_147215 283665 Hs.638961 NR_147215 LOC283665 - uncharacterized LOC283665 ncRNA 568-197 chr8 89149655 89150123 + 2 NA Intergenic L1P4|LINE|L1 607822 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 351-474 chr8 55093479 55093786 + 2 NA Intergenic L1MC3|LINE|L1 -8396 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 373-216 chr2 163824728 163825054 + 2 NA Intergenic L1MA1|LINE|L1 -88883 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 294-201 chr2 30819769 30820054 + 2 NA Intergenic Intergenic -12465 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 545-153 chr4 24757128 24757567 + 2 NA Intergenic L1M4a2|LINE|L1 -38226 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 386-234 chr3 44503608 44503947 + 2 NA intron (NM_001287349, intron 1 of 4) L1M4|LINE|L1 6840 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 537-228 chr7 11868867 11869295 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -36883 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 499-78 chr16 7309013 7309399 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -23639 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 247-119 chr14 75621774 75621983 + 2 NA intron (NM_001195283, intron 1 of 9) intron (NM_001195283, intron 1 of 9) 16338 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 224-77 chr14 22330104 22330274 + 2 NA Intergenic Intergenic 102564 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 736-76 chr6 71422056 71422725 + 2 NA intron (NR_121615, intron 1 of 7) intron (NR_121615, intron 1 of 7) 1363 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 562-149 chr3 144482303 144482818 + 2 NA Intergenic L1ME3Cz|LINE|L1 509479 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 326-124 chr12 24332244 24332513 + 2 NA intron (NM_152989, intron 3 of 17) HAL1ME|LINE|L1 109107 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 366-47 chr10 47423749 47424105 + 2 NA Intergenic AluSc8|SINE|Alu -9452 NR_134499 105378292 Hs.131331 NR_134499 LOC105378292 - uncharacterized LOC105378292 ncRNA 343-300 chr20 19899537 19899780 + 2 NA intron (NM_001242581, intron 2 of 11) MLT1F2|LTR|ERVL-MaLR 10092 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 247-209 chr2 115097673 115097890 + 2 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 33208 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 253-182 chr2 41512727 41512909 + 2 NA Intergenic L2a|LINE|L2 -364737 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 252-118 chr14 68740351 68740545 + 2 NA Intergenic AluSp|SINE|Alu 53466 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 355-28 chr1 230559990 230560290 + 2 NA Intergenic L1ME3|LINE|L1 35443 NR_146479 101927553 Hs.680219 NR_146479 ENSG00000232964 LINC01737 - long intergenic non-protein coding RNA 1737 ncRNA 352-15 chr1 86288832 86289141 + 2 NA Intergenic Intergenic 68701 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 310-295 chr20 56828802 56828986 + 2 NA Intergenic Intergenic 199588 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 361-260 chr21 19182259 19182497 + 2 NA Intergenic L1MEc|LINE|L1 -422566 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 308-449 chr7 10239530 10239823 + 2 NA Intergenic Intergenic -463000 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 298-89 chr12 15497655 15497834 + 2 NA intron (NM_030667, intron 3 of 26) intron (NM_030667, intron 3 of 26) -48867 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 389-43 chr10 90456118 90456339 + 2 NA intron (NR_110657, intron 2 of 6) L1PA15|LINE|L1 84577 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 462-121 chr18 73232690 73233109 + 2 NA intron (NR_034133, intron 2 of 5) L4_C_Mam|LINE|RTE-X 31599 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 367-352 chr5 38741015 38741242 + 2 NA intron (NR_109951, intron 3 of 3) L1MC4a|LINE|L1 -20855 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 388-211 chr22 47318912 47319146 + 2 NA Intergenic L1MEg|LINE|L1 -26542 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 665-91 chr7 49368406 49368846 + 2 NA Intergenic L1MB4|LINE|L1 -405012 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 367-363 chr5 85967087 85967347 + 2 NA Intergenic Intergenic -315227 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 488-201 chr4 173927459 173927833 + 2 NA intron (NR_146487, intron 1 of 2) FLAM_C|SINE|Alu 30373 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 357-464 chr8 135266823 135267089 + 2 NA intron (NR_120396, intron 1 of 4) L2c|LINE|L2 32825 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 320-412 chr4 172366329 172366583 + 2 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 322461 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 314-588 chr8 129098037 129098219 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -132127 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 432-23 chr1 238506186 238506509 + 2 NA Intergenic L1MEd|LINE|L1 -20330 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 240-252 chr2 227103999 227104202 + 2 NA intron (NM_000092, intron 12 of 47) intron (NM_000092, intron 12 of 47) 60459 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 146-22 chr13 86640069 86640210 + 2 NA Intergenic Intergenic -271781 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 298-376 chr5 117157250 117157531 + 2 NA Intergenic Intergenic -258122 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 428-68 chr14 65310973 65311234 + 2 NA Intergenic L1M5|LINE|L1 24080 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 317-9 chr1 53842490 53842695 + 2 NA Intergenic Intergenic -4296 NR_033142 55706 Hs.476525 NM_018087 ENSG00000058804 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 358-195 chr2 34172682 34172969 + 2 NA intron (NR_126403, intron 4 of 5) THE1C|LTR|ERVL-MaLR 105599 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 204-115 chr17 14769373 14769569 + 2 NA Intergenic LTR41|LTR|ERVL -245334 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 594-20 chr10 99159300 99159720 + 2 NA intron (NM_021828, intron 2 of 11) L1MD2|LINE|L1 76365 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 328-336 chr3 3282914 3283096 + 2 NA Intergenic L1MA9|LINE|L1 -103288 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 290-194 chr19 57627298 57627562 + 2 NA Intergenic Intergenic -5737 NM_001265598 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 235-78 chr12 16926827 16927001 + 2 NA Intergenic L1M3c|LINE|L1 -61833 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 455-260 chr7 102931799 102932163 + 2 NA intron (NR_105043, intron 9 of 20) intron (NR_105043, intron 9 of 20) 18981 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 648-139 chr7 138372730 138373079 + 2 NA Intergenic L1MC4a|LINE|L1 -87355 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 278-37 chr10 64968408 64968649 + 2 NA Intergenic Intergenic -44010 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 328-313 chr20 26305675 26305850 + 2 NA Intergenic ALR/Alpha|Satellite|centr -96529 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene ncRNA 247-275 chr3 153319520 153319735 + 2 NA Intergenic Intergenic 157401 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 515-142 chr20 9713201 9713652 + 2 NA intron (NM_177990, intron 1 of 9) L1MA4|LINE|L1 125650 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 375-56 chr10 83761348 83761563 + 2 NA Intergenic ERVL47-int|LTR|ERVL -84366 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 276-282 chr3 8144219 8144436 + 2 NA Intergenic Intergenic -128020 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 259-162 chr17 64422327 64422513 + 2 NA Intergenic AluSx|SINE|Alu -26695 NM_001291317 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 670-21 chr11 84768965 84769352 + 2 NA intron (NM_001351274, intron 5 of 26) L1PA16|LINE|L1 -48216 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 282-143 chr15 54510417 54510572 + 2 NA intron (NM_001329919, intron 22 of 31) MER5B|DNA|hAT-Charlie 497846 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 363-383 chr5 179593049 179593328 + 2 NA intron (NM_001040452, intron 10 of 17) AluSz|SINE|Alu 10553 NR_110560 101928445 Hs.663255 NR_110560 ENSG00000244945 LOC101928445 - uncharacterized LOC101928445 ncRNA 436-314 chr8 127377900 127378307 + 2 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -22296 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 424-180 chr3 171070253 171070622 + 2 NA intron (NM_001161563, intron 28 of 31) GA-rich|Low_complexity|Low_complexity 36322 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 583-116 chr3 177234228 177234609 + 2 NA Intergenic Intergenic -36936 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 282-499 chrX 66119843 66120115 + 2 NA Intergenic L2|LINE|L2 -42692 NM_138737 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 627-104 chr6 130031191 130031604 + 2 NA intron (NM_001007102, intron 2 of 21) intron (NM_001007102, intron 2 of 21) 11753 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 423-307 chr9 5315991 5316220 + 2 NA Intergenic L1M2a|LINE|L1 -11389 NM_134441 6019 Hs.127032 NM_005059 ENSG00000107014 RLN2 H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2 relaxin 2 protein-coding 406-274 chr7 46308152 46308528 + 2 NA Intergenic L1PB1|LINE|L1 -387068 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 333-205 chr18 49039398 49039572 + 2 NA intron (NR_148999, intron 3 of 4) L1ME3B|LINE|L1 10283 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 275-304 chr5 166236602 166236754 + 2 NA Intergenic L1MB3|LINE|L1 689692 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 589-124 chr5 84770235 84770697 + 2 NA Intergenic Intergenic -385586 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 232-354 chr7 48969372 48969540 + 2 NA Intergenic L2c|LINE|L2 44909 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 377-51 chr10 91076358 91076715 + 2 NA Intergenic MIR3|SINE|MIR 30728 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 237-257 chr3 190316803 190317009 + 2 NA intron (NM_021101, intron 1 of 3) intron (NM_021101, intron 1 of 3) 5540 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 741-62 chr6 124106113 124106672 + 2 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) -176613 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 115-4 chr1 161181256 161181355 + 2 NA Intergenic Intergenic -3337 NM_001199873 8703 Hs.321231 NM_003779 ENSG00000158850 B4GALT3 beta4Gal-T3 beta-1,4-galactosyltransferase 3 protein-coding 216-305 chr6 67058634 67058789 + 2 NA Intergenic L1MA4|LINE|L1 -996640 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 317-366 chr4 161729322 161729537 + 2 NA intron (NM_001128428, intron 6 of 14) intron (NM_001128428, intron 6 of 14) -293304 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 481-260 chr6 33985974 33986323 + 2 NA Intergenic Intergenic 13903 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 531-91 chr18 59242889 59243269 + 2 NA Intergenic L1MD1|LINE|L1 22921 NM_001012513 2922 Hs.153444 NM_002091 ENSG00000134443 GRP BN|GRP-10|preproGRP|proGRP gastrin releasing peptide protein-coding 323-392 chr5 13178187 13178474 + 2 NA Intergenic Intergenic -145444 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 251-231 chr3 50870588 50870775 + 2 NA intron (NM_004947, intron 3 of 52) L1MA2|LINE|L1 195601 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 320-436 chr5 41256474 41256756 + 2 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 4854 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 619-94 chr4 130302126 130302533 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -74032 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 171-38 chr15 97407056 97407203 + 2 NA intron (NR_120324, intron 3 of 4) MIRb|SINE|MIR 114682 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 345-29 chr1 182424828 182425116 + 2 NA Intergenic Intergenic 17351 NR_034131 388719 Hs.508989 NM_001010899 ENSG00000203729 LINC00272 C1orf120|NCRNA00272 long intergenic non-protein coding RNA 272 ncRNA 339-368 chr3 86840582 86840766 + 2 NA Intergenic Intergenic 150475 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 231-134 chr18 25075449 25075622 + 2 NA intron (NM_001308225, intron 6 of 6) intron (NM_001308225, intron 6 of 6) -87556 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 386-211 chr20 60622672 60622942 + 2 NA Intergenic Intergenic 58245 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 222-300 chr5 88897608 88897792 + 2 NA intron (NR_136221, intron 1 of 6) intron (NR_136221, intron 1 of 6) 6405 NM_001193347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 374-195 chr2 116296501 116296801 + 2 NA Intergenic L1MA4|LINE|L1 952836 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 211-160 chr20 10336707 10336891 + 2 NA Intergenic Intergenic 95126 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 556-193 chr6 71822862 71823349 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -63598 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 309-174 chr15 54860919 54861077 + 2 NA Intergenic L1M1|LINE|L1 -195749 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 343-583 chr9 89030314 89030538 + 2 NA intron (NM_016848, intron 11 of 11) L1M4b|LINE|L1 38958 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 465-217 chr5 25164423 25164681 + 2 NA intron (NR_147006, intron 2 of 4) intron (NR_147006, intron 2 of 4) 26104 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 410-320 chr8 136538239 136538582 + 2 NA intron (NR_147196, intron 2 of 5) Charlie1a|DNA|hAT-Charlie 7612 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 224-340 chr8 131691719 131691919 + 2 NA Intergenic Intergenic -212274 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 367-183 chr19 40946753 40946996 + 2 NA intron (NR_001278, intron 8 of 8) AluSc8|SINE|Alu 22609 NR_001278 1556 Hs.529117 NR_001278 ENSG00000256612 CYP2B7P CYP2B|CYP2B7|CYP2B7P1 cytochrome P450 family 2 subfamily B member 7, pseudogene pseudo 256-191 chr2 36576010 36576165 + 2 NA intron (NM_001042548, intron 5 of 8) intron (NM_001042548, intron 5 of 8) 22081 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 230-211 chr21 21912119 21912266 + 2 NA Intergenic Intergenic 165207 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 198-43 chr11 99311712 99311878 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) -244350 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 577-181 chr7 31672468 31672922 + 2 NA Intergenic MER89|LTR|ERV1 -14322 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 506-86 chr14 57730495 57730835 + 2 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 134334 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 317-20 chr1 111886954 111887263 + 2 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) -22549 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 208-10 chr1 162983544 162983683 + 2 NA Intergenic MIRc|SINE|MIR -84993 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 308-290 chr3 43917635 43917858 + 2 NA Intergenic LTR33A|LTR|ERVL -196466 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 371-292 chr4 141086565 141086783 + 2 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 46795 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 156-37 chr15 89787854 89787958 + 2 NA intron (NM_001150, intron 20 of 20) L1MB7|LINE|L1 11574 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 529-36 chr11 92854649 92855040 + 2 NA intron (NM_001008781, intron 18 of 24) intron (NM_001008781, intron 18 of 24) 60784 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 326-423 chr5 107154022 107154306 + 2 NA Intergenic Intergenic -143150 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 364-242 chr20 4371684 4371967 + 2 NA Intergenic Intergenic -122538 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 396-278 chr5 39449732 39450007 + 2 NA Intergenic Intergenic -24636 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 337-147 chr14 44726019 44726272 + 2 NA Intergenic MIRb|SINE|MIR 72981 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 407-64 chr12 44751334 44751679 + 2 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 124155 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 392-32 chr10 98895140 98895471 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 29263 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 375-16 chr1 110919807 110920081 + 2 NA Intergenic L1MC1|LINE|L1 43978 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 340-443 chr5 53289931 53290161 + 2 NA Intergenic LTR50|LTR|ERVL 180204 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 312-297 chr20 54564557 54564787 + 2 NA intron (NM_018431, intron 2 of 7) intron (NM_018431, intron 2 of 7) 89079 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 296-157 chr15 67657543 67657777 + 2 NA intron (NM_001206804, intron 11 of 21) intron (NM_001206804, intron 11 of 21) 108566 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 189-199 chr8 36177264 36177433 + 2 NA Intergenic L1MEc|LINE|L1 -467028 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 215-121 chr18 6694715 6694896 + 2 NA Intergenic Intergenic -34911 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 404-4 chr1 42321350 42321617 + 2 NA intron (NM_001198851, intron 2 of 14) intron (NM_001198851, intron 2 of 14) 13472 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 490-231 chr5 141410451 141410844 + 2 NA TTS (NM_032100) TTS (NM_032100) 2444 NM_032100 56100 Hs.368160 NM_018926 ENSG00000253305 PCDHGB6 PCDH-GAMMA-B6 protocadherin gamma subfamily B, 6 protein-coding 302-218 chr2 103877638 103877914 + 2 NA Intergenic Intergenic 530556 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 300-432 chr7 53997946 53998175 + 2 NA Intergenic L1MEc|LINE|L1 -186129 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 323-537 chr8 62658522 62658763 + 2 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -319219 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 486-43 chr11 26413548 26413964 + 2 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) -60146 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 317-402 chr5 156559748 156559927 + 2 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 232673 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 535-146 chr2 213786898 213787251 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 29007 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 461-158 chr20 42952558 42952868 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -16030 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 330-462 chr6 65692033 65692201 + 2 NA intron (NM_001292009, intron 1 of 43) L1PB4|LINE|L1 15108 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 381-276 chr4 91557770 91558065 + 2 NA intron (NM_001145065, intron 10 of 10) Charlie7|DNA|hAT-Charlie 719385 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 516-190 chr4 60316465 60316969 + 2 NA Intergenic L1MD1|LINE|L1 -605902 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 137-29 chr15 39216322 39216431 + 2 NA Intergenic MIRb|SINE|MIR -34293 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 362-129 chr12 128716435 128716790 + 2 NA Intergenic L2a|LINE|L2 107346 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 326-19 chr1 84154184 84154383 + 2 NA intron (NM_001300916, intron 1 of 8) L1MA9|LINE|L1 -9901 NM_001242859 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 334-276 chr2 107705553 107705805 + 2 NA Intergenic HAL1b|LINE|L1 -48433 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 344-322 chr3 96519706 96520016 + 2 NA Intergenic L1MA1|LINE|L1 159897 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 477-152 chr2 72395511 72395941 + 2 NA intron (NM_001321729, intron 18 of 22) MIRb|SINE|MIR -247864 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 351-121 chr14 53487827 53488157 + 2 NA Intergenic L1MA9|LINE|L1 334638 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 327-535 chrX 47914604 47914784 + 2 NA intron (NM_007137, intron 4 of 4) Tigger3c|DNA|TcMar-Tigger 77792 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 218-44 chr11 26404507 26404657 + 2 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) -69320 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 270-156 chr17 66225168 66225356 + 2 NA intron (NM_000042, intron 3 of 7) intron (NM_000042, intron 3 of 7) 4153 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 286-331 chr4 183897622 183897893 + 2 NA intron (NR_132761, intron 1 of 2) intron (NR_132761, intron 1 of 2) -7550 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 356-52 chr10 59498771 59499100 + 2 NA Intergenic MIR|SINE|MIR -135754 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 838-27 chr5 124381978 124382652 + 2 NA intron (NR_125774, intron 4 of 5) L1MB3|LINE|L1 56205 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 328-328 chr21 29598904 29599226 + 2 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 3025 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 393-231 chr3 167995283 167995628 + 2 NA Intergenic Intergenic 99507 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 368-403 chr6 127056635 127056952 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -61878 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 257-171 chr19 52126759 52126954 + 2 NA intron (NM_178523, intron 2 of 3) L1M4c|LINE|L1 13082 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 276-307 chr3 133150661 133150871 + 2 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 25945 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 209-284 chr6 162140019 162140128 + 2 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -587059 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 239-230 chr3 6376034 6376256 + 2 NA Intergenic Intergenic 429304 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 159-37 chr19 14914478 14914620 + 2 NA Intergenic Intergenic -26940 NM_012377 26658 Hs.589620 NM_012377 ENSG00000127529 OR7C2 CIT-HSP-87M17|OR19-18|OR7C3 olfactory receptor family 7 subfamily C member 2 protein-coding 236-377 chr9 25173599 25173785 + 2 NA Intergenic L1M4b|LINE|L1 505166 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 291-503 chrX 47915807 47915970 + 2 NA exon (NM_007137, exon 5 of 5) exon (NM_007137, exon 5 of 5) 78986 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 419-266 chr7 8541984 8542266 + 2 NA intron (NM_152745, intron 2 of 2) L1MEc|LINE|L1 108516 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 521-258 chr8 127178808 127179265 + 2 NA Intergenic Intergenic 18591 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 412-213 chr3 94947858 94948093 + 2 NA intron (NR_015400, intron 1 of 7) intron (NR_015400, intron 1 of 7) 9712 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 614-57 chr2 129542168 129542613 + 2 NA Intergenic L1MB4|LINE|L1 -268499 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 225-320 chr7 18418426 18418563 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -77216 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 309-434 chr5 41080431 41080627 + 2 NA Intergenic L1PB3|LINE|L1 -9187 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 548-79 chr14 70078815 70079179 + 2 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) 1220 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 633-97 chr5 68621504 68621979 + 2 NA Intergenic Intergenic 329164 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 647-62 chr22 34413866 34414446 + 2 NA Intergenic Intergenic -491268 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 134-93 chr9 81497595 81497694 + 2 NA Intergenic L2b|LINE|L2 191891 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 337-589 chr9 107204821 107204992 + 2 NA Intergenic L1MC1|LINE|L1 -78373 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 343-125 chr13 73441447 73441670 + 2 NA Intergenic MER61-int|LTR|ERV1 -122686 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 353-535 chr8 120176003 120176259 + 2 NA intron (NM_021110, intron 5 of 47) intron (NM_021110, intron 5 of 47) 51029 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 267-409 chr8 21457580 21457803 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 159452 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 290-401 chr6 156627249 156627419 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -150521 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 210-121 chr2 44555951 44556150 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 194103 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 383-292 chr4 101495499 101495834 + 2 NA Intergenic L1MC1|LINE|L1 147889 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 275-396 chrX 78305764 78305975 + 2 NA intron (NM_006639, intron 1 of 2) L1MB1|LINE|L1 21742 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 505-240 chr5 63588787 63589132 + 2 NA Intergenic Intergenic 373333 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 336-543 chr8 88709452 88709749 + 2 NA Intergenic MER34-int|LTR|ERV1 -382117 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 659-81 chr4 64533987 64534396 + 2 NA Intergenic L2|LINE|L2 -124731 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 219-356 chr8 77791709 77791859 + 2 NA Intergenic Intergenic 341087 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 598-13 chr1 234943891 234944383 + 2 NA Intergenic Intergenic 19862 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 488-128 chr2 23163767 23164137 + 2 NA Intergenic Intergenic -221227 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 618-21 chr11 54931839 54932193 + 2 NA Intergenic ALR/Alpha|Satellite|centr 225184 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 296-44 chr10 52983901 52984105 + 2 NA Intergenic Intergenic -212303 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 405-337 chr8 136343819 136344098 + 2 NA Intergenic L1ME2|LINE|L1 -186840 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 262-182 chr18 36495957 36496129 + 2 NA intron (NM_001281740, intron 3 of 28) intron (NM_001281740, intron 3 of 28) 167375 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 154-92 chr5 147613124 147613240 + 2 NA intron (NM_001282282, intron 18 of 20) intron (NM_001282282, intron 18 of 20) 53188 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 489-265 chr9 16938515 16938884 + 2 NA Intergenic L1M2|LINE|L1 -68029 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 780-50 chr5 123665803 123666411 + 2 NA Intergenic Intergenic 120690 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 357-331 chr5 8177766 8178027 + 2 NA Intergenic Intergenic 279668 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 349-251 chr2 50752392 50752679 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -56273 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 325-527 chr8 19310749 19310969 + 2 NA Intergenic MER91C|DNA|hAT-Tip100 -2711 NR_156444 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 704-85 chr8 87317519 87318061 + 2 NA intron (NM_173538, intron 8 of 10) L1MEc|LINE|L1 451375 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 310-460 chr6 136122344 136122582 + 2 NA intron (NM_018945, intron 3 of 12) intron (NM_018945, intron 3 of 12) -49636 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 338-209 chr17 16602024 16602341 + 2 NA Intergenic L1MB3|LINE|L1 -32970 NM_001346168 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 317-306 chr3 84462436 84462651 + 2 NA Intergenic Intergenic 407032 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 690-12 chr10 117331063 117331558 + 2 NA intron (NM_173791, intron 2 of 4) MIR|SINE|MIR 44130 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 459-300 chr8 89641462 89641722 + 2 NA Intergenic L1M2|LINE|L1 116119 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 278-337 chr5 55181863 55182005 + 2 NA Intergenic Intergenic -8757 NM_001145734 166979 Hs.669184 NM_152623 ENSG00000164287 CDC20B G6VTS76519 cell division cycle 20B protein-coding 374-298 chr5 14599330 14599631 + 2 NA intron (NM_019018, intron 1 of 7) AluSp|SINE|Alu 17688 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 646-99 chr5 24182034 24182514 + 2 NA Intergenic Intergenic 230926 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 220-323 chr6 124403075 124403264 + 2 NA intron (NM_153355, intron 3 of 5) L1ME3B|LINE|L1 120164 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 453-14 chr1 189662667 189663090 + 2 NA Intergenic Intergenic 813132 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 328-6 chr1 49012770 49013001 + 2 NA intron (NM_001323575, intron 5 of 12) MSTC|LTR|ERVL-MaLR -235916 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 354-216 chr2 107499733 107499993 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -29556 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 131-5 chr1 150679382 150679464 + 2 NA intron (NM_018178, intron 2 of 4) intron (NM_018178, intron 2 of 4) 17731 NM_018178 55204 Hs.203699 NM_018178 ENSG00000143457 GOLPH3L GPP34R golgi phosphoprotein 3 like protein-coding 258-272 chr3 154499925 154500154 + 2 NA Intergenic Intergenic -69849 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 590-68 chr18 72404976 72405555 + 2 NA Intergenic Intergenic 139077 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 280-137 chr15 49722828 49723046 + 2 NA Intergenic Intergenic 101889 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 673-89 chr4 113792562 113793039 + 2 NA Intergenic L1MA4|LINE|L1 -30873 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 236-244 chr3 188932438 188932627 + 2 NA Intergenic L2a|LINE|L2 15107 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 538-137 chr20 42812698 42813150 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) 127441 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 213-244 chr5 159385299 159385494 + 2 NA Intergenic AluSz|SINE|Alu 53878 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 276-305 chr3 116045938 116046098 + 2 NA intron (NM_001318915, intron 2 of 8) intron (NM_001318915, intron 2 of 8) -140892 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 401-295 chr7 37079825 37080147 + 2 NA intron (NM_001206480, intron 15 of 21) L2a|LINE|L2 82190 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 277-240 chr21 31479787 31479969 + 2 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 79209 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 181-24 chr10 111635933 111636055 + 2 NA Intergenic Intergenic 521703 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 372-442 chr6 119576456 119576739 + 2 NA intron (NR_134600, intron 2 of 3) L1MB1|LINE|L1 26789 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 418-58 chr12 94083451 94083726 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -64989 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 217-403 chrX 95158908 95159073 + 2 NA Intergenic L1PA13|LINE|L1 -95764 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 382-370 chr7 4309026 4309235 + 2 NA Intergenic AluY|SINE|Alu -174293 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 295-151 chr15 61041700 61041891 + 2 NA intron (NM_134261, intron 1 of 10) MIRc|SINE|MIR 187507 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 214-138 chr18 4993676 4993857 + 2 NA Intergenic Intergenic -87416 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 286-476 chr9 69399025 69399226 + 2 NA Intergenic L1M5|LINE|L1 69800 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 327-318 chr3 7268070 7268284 + 2 NA intron (NM_000844, intron 2 of 9) LTR37A|LTR|ERV1 267107 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 385-225 chr21 34253169 34253527 + 2 NA Intergenic Intergenic 72671 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 200 chr1 10454379 10454547 + 2 NA Intergenic AluY|SINE|Alu 4432 NM_001302 1325 Hs.412311 NM_001302 ENSG00000241563 CORT CST-14|CST-17|CST-29 cortistatin protein-coding 476-183 chr3 147006651 147006937 + 2 NA Intergenic L1M1|LINE|L1 84871 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 276-329 chr4 44346612 44346783 + 2 NA intron (NM_198353, intron 1 of 1) MamRep1527|LTR|LTR 102112 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 505-260 chr6 7634274 7634645 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie 44261 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 246-2 chr1 49813154 49813347 + 2 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 210704 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 271-348 chr5 63775159 63775359 + 2 NA Intergenic Intergenic 187033 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 332-190 chr16 82986410 82986637 + 2 NA intron (NR_110937, intron 1 of 2) intron (NR_110937, intron 1 of 2) 3775 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 313-42 chr10 39239358 39239542 + 2 NA Intergenic ALR/Alpha|Satellite|centr 542854 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 204-268 chr7 25208630 25208799 + 2 NA Intergenic L1MA9|LINE|L1 19772 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 298-115 chr14 55937818 55938101 + 2 NA Intergenic Intergenic -141285 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 751-9 chr11 85763795 85764427 + 2 NA intron (NM_001365826, intron 1 of 18) L3|LINE|CR1 -6042 NM_001162951 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 319-206 chr18 54748408 54748668 + 2 NA Intergenic Intergenic -79939 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 366-224 chr2 144395871 144396063 + 2 NA intron (NM_001171653, intron 8 of 8) intron (NM_001171653, intron 8 of 8) -62898 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 157-55 chr2 7458839 7458940 + 2 NA Intergenic L1MD2|LINE|L1 37628 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 275-11 chr1 105628446 105628672 + 2 NA Intergenic Intergenic -9624 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 459-44 chr10 126698402 126698799 + 2 NA Intergenic Intergenic -28090 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 333-110 chr12 14567836 14568147 + 2 NA promoter-TSS (NM_024829) promoter-TSS (NM_024829) -108 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 333-582 chr8 111922562 111922749 + 2 NA Intergenic LTR38B|LTR|ERV1 546016 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 559-8 chr1 183175284 183175800 + 2 NA Intergenic L1MA2|LINE|L1 -10722 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 272-129 chr15 39207401 39207578 + 2 NA Intergenic MLT-int|LTR|ERVL-MaLR -43180 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 503-84 chr13 39790355 39790850 + 2 NA 3' UTR (NM_001145079, exon 19 of 19) 3' UTR (NM_001145079, exon 19 of 19) -126467 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 256-59 chr10 127505347 127505517 + 2 NA Intergenic MIRb|SINE|MIR -43917 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 327-326 chr3 43355935 43356103 + 2 NA Intergenic L1PREC2|LINE|L1 -4057 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 393-270 chr5 27443477 27443832 + 2 NA Intergenic L1M1|LINE|L1 -28638 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 570-113 chr2 154028749 154029077 + 2 NA intron (NM_052917, intron 3 of 12) L1MCc|LINE|L1 84519 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 470-51 chr12 40607226 40607555 + 2 NA Intergenic L1MB7|LINE|L1 -85049 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 253-414 chr8 121597516 121597681 + 2 NA Intergenic MER21A|LTR|ERVL -41748 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 247-75 chr12 4349990 4350182 + 2 NA intron (NM_020375, intron 4 of 5) intron (NM_020375, intron 4 of 5) 28873 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 182-61 chr15 26592357 26592488 + 2 NA intron (NM_001191320, intron 2 of 6) intron (NM_001191320, intron 2 of 6) 36668 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 406-10 chr1 90681122 90681488 + 2 NA Intergenic AluJo|SINE|Alu 23555 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 305-570 chrX 55316160 55316371 + 2 NA Intergenic L1PB1|LINE|L1 36177 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 946-26 chr8 130704823 130705468 + 2 NA Intergenic AluYb8|SINE|Alu -261471 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 120-33 chr3 87165425 87165517 + 2 NA Intergenic MIR|SINE|MIR 60806 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 362-480 chrX 113186123 113186416 + 2 NA intron (NR_110399, intron 3 of 3) L1PA14|LINE|L1 143542 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 256-386 chr7 49880863 49881029 + 2 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 105613 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 354-127 chr14 21636170 21636385 + 2 NA Intergenic Intergenic -1337 NM_001005466 26534 Hs.554580 NM_001005466 ENSG00000255582 OR10G2 OR14-41 olfactory receptor family 10 subfamily G member 2 protein-coding 126-22 chr14 27543671 27543790 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -68858 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 496-245 chr6 153146762 153147200 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -15699 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 364-459 chr8 133214420 133214703 + 2 NA intron (NM_001204869, intron 2 of 2) intron (NM_001204869, intron 2 of 2) 23522 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 502-64 chr12 30374740 30375107 + 2 NA Intergenic LTR8|LTR|ERV1 302321 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 342-350 chr4 30594034 30594237 + 2 NA Intergenic Intergenic -126234 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 341-393 chr4 111545693 111545928 + 2 NA Intergenic Intergenic -599644 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 453-133 chr2 209255950 209256371 + 2 NA Intergenic Intergenic -167887 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 291-27 chr1 180487848 180488101 + 2 NA intron (NM_032360, intron 3 of 7) MER44C|DNA|TcMar-Tigger 14603 NM_032360 84320 Hs.200051 NM_032360 ENSG00000230124 ACBD6 - acyl-CoA binding domain containing 6 protein-coding 340-523 chr8 43834295 43834615 + 2 NA Intergenic ALR/Alpha|Satellite|centr 542013 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 301-168 chr17 70541249 70541479 + 2 NA Intergenic Intergenic 371829 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 399-104 chr16 12312675 12313042 + 2 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 336124 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 490-61 chr11 133178619 133178958 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -235020 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 379-57 chr11 80845674 80845957 + 2 NA Intergenic Intergenic -83012 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 341-49 chr1 241575671 241575962 + 2 NA intron (NM_003679, intron 10 of 14) L1PB3|LINE|L1 43438 NM_003679 8564 Hs.731056 NM_003679 ENSG00000117009 KMO dJ317G22.1 kynurenine 3-monooxygenase protein-coding 293-188 chr2 77441293 77441442 + 2 NA intron (NR_146416, intron 1 of 1) MIR|SINE|MIR 81009 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 273-394 chr6 114897231 114897494 + 2 NA Intergenic Intergenic 746473 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 355-152 chr14 53458361 53458569 + 2 NA Intergenic Intergenic 305111 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 554-192 chr7 54493362 54493714 + 2 NA Intergenic L2a|LINE|L2 -48787 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 356-402 chr5 87985515 87985852 + 2 NA Intergenic L1MEd|LINE|L1 283162 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 204-229 chr5 7591945 7592125 + 2 NA intron (NM_020546, intron 3 of 24) L1ME3G|LINE|L1 195897 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 347-490 chr8 18706436 18706754 + 2 NA intron (NM_015310, intron 9 of 15) MamRep605|LTR?|LTR? 102272 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 207-42 chr10 100339078 100339201 + 2 NA Intergenic LTR16B2|LTR|ERVL -8094 NM_005063 6319 Hs.558396 NM_005063 ENSG00000099194 SCD FADS5|MSTP008|SCD1|SCDOS|hSCD1 stearoyl-CoA desaturase protein-coding 160-97 chr6 141405761 141405918 + 2 NA Intergenic LOR1-int|LTR|ERV1 682960 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 196-49 chr11 101120340 101120527 + 2 NA intron (NM_000926, intron 2 of 7) intron (NM_000926, intron 2 of 7) 8630 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 415-67 chr14 24684039 24684391 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -50025 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 585-34 chr13 82976503 82976906 + 2 NA Intergenic Intergenic 905689 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 353-166 chr15 95955936 95956142 + 2 NA Intergenic MIRb|SINE|MIR 171802 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 297-267 chr20 42871582 42871791 + 2 NA intron (NM_133170, intron 2 of 31) L1MB2|LINE|L1 -97057 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 242-204 chr2 189360003 189360143 + 2 NA Intergenic L1M2|LINE|L1 -81360 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 456-149 chr2 56309234 56309629 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -123661 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 553-77 chr16 51256267 51256639 + 2 NA intron (NR_039672, intron 6 of 6) L1PA16|LINE|L1 -105181 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 386-105 chr14 72262226 72262458 + 2 NA intron (NM_001370288, intron 2 of 16) MLT1B|LTR|ERVL-MaLR -254478 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 259-174 chr19 12469982 12470238 + 2 NA intron (NM_152601, intron 1 of 3) intron (NM_152601, intron 1 of 3) 14706 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 313-281 chr2 160300933 160301167 + 2 NA intron (NM_002897, intron 5 of 13) intron (NM_002897, intron 5 of 13) -29155 NR_103775 100505984 Hs.729532 NR_103775 ENSG00000285373 LINC02478 - long intergenic non-protein coding RNA 2478 ncRNA 244-274 chr4 99090399 99090636 + 2 NA intron (NR_037884, intron 1 of 9) L2|LINE|L2 1660 NR_037884 100507053 Hs.635084 NR_037884 ENSG00000246090 LOC100507053 - uncharacterized LOC100507053 ncRNA 274-384 chr8 77360303 77360570 + 2 NA Intergenic Intergenic -90261 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 349-354 chr3 187538001 187538316 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 91112 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 394-262 chr5 35846874 35847096 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -9906 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 513-180 chr3 69916668 69917011 + 2 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) -19753 NM_001184968 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 404-190 chr20 4467601 4467969 + 2 NA Intergenic L1MEg|LINE|L1 -218498 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 234-202 chr2 219695514 219695728 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 67991 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 210-186 chr4 10168815 10168989 + 2 NA Intergenic HERVK9-int|LTR|ERVK -52103 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 259-439 chrX 6731897 6732101 + 2 NA Intergenic Intergenic -196881 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 312-498 chr7 132098820 132099000 + 2 NA Intergenic L1ME2z|LINE|L1 -161951 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 193-163 chr5 22819726 22819916 + 2 NA intron (NM_001364105, intron 1 of 15) (ATATAT)n|Simple_repeat|Simple_repeat 33523 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 302-479 chr8 142070874 142071080 + 2 NA Intergenic L1M5|LINE|L1 -105362 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 460-91 chr15 69640245 69640623 + 2 NA intron (NR_126437, intron 3 of 5) L1MD1|LINE|L1 48234 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 348-111 chr12 38002298 38002491 + 2 NA Intergenic ALR/Alpha|Satellite|centr -314380 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 163-110 chr6 128697091 128697191 + 2 NA Intergenic Intergenic -176542 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 423-45 chr11 24932493 24932754 + 2 NA intron (NM_001009909, intron 7 of 11) L1PB1|LINE|L1 435570 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 420-263 chr6 157759403 157759660 + 2 NA Intergenic AluJb|SINE|Alu -63715 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 523-55 chr11 102036194 102036603 + 2 NA Intergenic L1MA9|LINE|L1 -11039 NM_001195005 85016 Hs.98328 NM_032930 ENSG00000137691 CFAP300 C11orf70|CILD38 cilia and flagella associated protein 300 protein-coding 152-18 chr11 98695456 98695583 + 2 NA Intergenic Intergenic -325430 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 245-309 chr6 131393884 131394060 + 2 NA Intergenic L1M4|LINE|L1 143568 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 391-361 chr8 111829242 111829533 + 2 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 452748 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 595-30 chr11 58103361 58103854 + 2 NA intron (NM_001005212, intron 2 of 2) L1M2|LINE|L1 15837 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 488-52 chr11 96503079 96503519 + 2 NA intron (NR_047481, intron 1 of 4) LTR46-int|LTR|ERV1 3578 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 435-165 chr4 41573357 41573651 + 2 NA intron (NM_001330786, intron 1 of 22) L1ME4a|LINE|L1 35347 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 199-111 chr2 57298510 57298679 + 2 NA Intergenic Intergenic -609057 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 360-429 chr7 17446832 17447157 + 2 NA intron (NR_110015, intron 1 of 2) L1PREC2|LINE|L1 72077 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 123-24 chr19 41693276 41693393 + 2 NA Intergenic L1PA15-16|LINE|L1 -5064 NM_001291485 1087 Hs.74466 NM_006890 ENSG00000007306 CEACAM7 CGM2 carcinoembryonic antigen related cell adhesion molecule 7 protein-coding 367-11 chr1 49641055 49641289 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -169087 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 188-78 chr17 62334496 62334651 + 2 NA Intergenic L2a|LINE|L2 -35645 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 313-66 chr10 119014916 119015139 + 2 NA Intergenic L1ME1|LINE|L1 -14687 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 437-149 chr2 180642931 180643269 + 2 NA Intergenic L1MA2|LINE|L1 -49004 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 224 chr1 5232171 5232385 + 2 NA Intergenic Intergenic 577669 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 533-69 chr16 6473731 6474094 + 2 NA intron (NM_018723, intron 2 of 15) MER89|LTR|ERV1 -299897 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 268-271 chr4 34155321 34155490 + 2 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 114342 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 276-162 chr15 51870445 51870628 + 2 NA intron (NM_014547, intron 3 of 9) MLT1J1|LTR|ERVL-MaLR 40883 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 203-201 chr6 54205583 54205739 + 2 NA intron (NM_138569, intron 10 of 12) intron (NM_138569, intron 10 of 12) 94218 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 411-297 chr8 132203026 132203379 + 2 NA intron (NM_004519, intron 1 of 14) MSTD|LTR|ERVL-MaLR -97937 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 532-247 chr7 52086203 52086556 + 2 NA Intergenic Intergenic -693123 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 559-56 chr15 76717053 76717556 + 2 NA intron (NR_148227, intron 17 of 32) L1MA9|LINE|L1 130657 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 534-219 chr6 86967973 86968312 + 2 NA intron (NM_000865, intron 1 of 1) L1ME4b|LINE|L1 30614 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 478-303 chr8 137737302 137737666 + 2 NA Intergenic MER87B|LTR|ERV1 -323896 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 271-12 chr1 81223444 81223619 + 2 NA Intergenic Intergenic -82661 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 837-28 chr3 115537563 115538244 + 2 NA Intergenic MIR|SINE|MIR -85607 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 213-144 chr2 107154539 107154687 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 194912 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 757-46 chr5 28130701 28131182 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 156724 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 338-601 chrX 51922505 51922684 + 2 NA Intergenic Intergenic 28971 NM_001005333 9500 Hs.5258 NM_006986 ENSG00000179222 MAGED1 DLXIN-1|NRAGE MAGE family member D1 protein-coding 279-3 chr1 8505143 8505325 + 2 NA intron (NM_001042681, intron 8 of 22) L1MC5|LINE|L1 -10321 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 241-94 chr12 133046669 133046808 + 2 NA intron (NM_001127372, intron 2 of 4) AluJb|SINE|Alu 9156 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 336-112 chr11 113649888 113650086 + 2 NA Intergenic Intergenic 56321 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 353-181 chr16 79103691 79103975 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 496904 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 383-336 chr6 44520457 44520756 + 2 NA Intergenic L1MA4A|LINE|L1 31275 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 752-20 chr14 82267466 82267989 + 2 NA Intergenic Intergenic -374905 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 553-243 chr8 138754716 138755089 + 2 NA intron (NM_152888, intron 21 of 64) MIRb|SINE|MIR 159139 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 459-136 chr2 67944476 67944853 + 2 NA Intergenic L1MC5|LINE|L1 118340 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 220-252 chr4 46212750 46212940 + 2 NA Intergenic Intergenic -88791 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 393-106 chr14 81518128 81518494 + 2 NA intron (NM_005065, intron 3 of 20) MER68-int|LTR|ERVL 15542 NM_005065 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 153-64 chr22 34811315 34811445 + 2 NA intron (NR_138042, intron 3 of 4) L1MC3|LINE|L1 186536 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 350-327 chr3 140686262 140686586 + 2 NA intron (NM_152616, intron 2 of 4) intron (NM_152616, intron 2 of 4) 8360 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 474-38 chr10 95102934 95103290 + 2 NA Intergenic L1MB8|LINE|L1 -33615 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 360-470 chr8 106928956 106929209 + 2 NA Intergenic AluSx4|SINE|Alu -158838 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 591-56 chr17_KI270729v1_random 13232 13656 + 2 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 313-422 chr5 30134634 30134832 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 254173 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 344-442 chr6 156101629 156101932 + 2 NA Intergenic Intergenic 154983 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 428-39 chr11 92821443 92821855 + 2 NA intron (NM_001008781, intron 12 of 24) intron (NM_001008781, intron 12 of 24) 93979 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 535-63 chr13 36500608 36500966 + 2 NA Intergenic L1ME1|LINE|L1 68292 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 308-258 chr2 220759340 220759588 + 2 NA Intergenic Intergenic 812840 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 338-311 chr22 24735672 24735976 + 2 NA non-coding (NR_045648, exon 14 of 22) non-coding (NR_045648, exon 14 of 22) -28677 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 407-197 chr3 73174228 73174583 + 2 NA Intergenic Intergenic 112746 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 230-21 chr1 180728698 180728882 + 2 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) 96768 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 331-481 chr7 9386089 9386273 + 2 NA Intergenic L1M2|LINE|L1 -248089 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 281-229 chr2 132748519 132748680 + 2 NA intron (NM_207481, intron 14 of 17) MIRc|SINE|MIR -77073 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 514-187 chr3 59795511 59795899 + 2 NA intron (NM_001354590, intron 7 of 8) AluJo|SINE|Alu -137208 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 716-55 chr4 91534735 91535326 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 742272 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 301-65 chr11 50735680 50735857 + 2 NA Intergenic ALR/Alpha|Satellite|centr 326621 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 377-238 chr2 229119953 229120300 + 2 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 111966 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 229-132 chr15 100166347 100166546 + 2 NA intron (NM_139057, intron 8 of 21) L1M1|LINE|L1 175529 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 406-130 chr2 5112850 5113220 + 2 NA Intergenic Intergenic -456813 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 206-12 chr1 113694614 113694755 + 2 NA Intergenic L1MEc|LINE|L1 64471 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 316-590 chr9 100543204 100543445 + 2 NA intron (NM_001198812, intron 5 of 9) L1MEd|LINE|L1 -34755 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 436-70 chr12 98157668 98158014 + 2 NA Intergenic Intergenic -162393 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 175-168 chr8 103679846 103680003 + 2 NA intron (NM_001348488, intron 3 of 25) MER58A|DNA|hAT-Charlie -139296 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 160-48 chr20 8938571 8938701 + 2 NA Intergenic L1ME3A|LINE|L1 107451 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 225-381 chr9 23465975 23466146 + 2 NA Intergenic L1MB7|LINE|L1 206339 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 350-477 chr7 42858488 42858809 + 2 NA Intergenic Intergenic 53195 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 591-165 chr8 115328529 115328948 + 2 NA Intergenic Intergenic 339275 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 286-211 chr2 107161510 107161711 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 187915 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 538-257 chr9 85007003 85007474 + 2 NA intron (NM_001018064, intron 16 of 17) L2c|LINE|L2 301337 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 273-101 chr12 30153337 30153543 + 2 NA Intergenic Intergenic -368681 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 574-36 chr13 92993801 92994349 + 2 NA Intergenic Intergenic -51266 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 520-11 chr1 84731445 84731885 + 2 NA Intergenic L1PA15|LINE|L1 -41197 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 232-313 chr5 130800206 130800420 + 2 NA Intergenic L1MA9|LINE|L1 364943 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 321-394 chr3 171908214 171908389 + 2 NA Intergenic Intergenic -7561 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 298-406 chr6 96413665 96413841 + 2 NA Intergenic Intergenic -108053 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 264-95 chr12 74636996 74637253 + 2 NA Intergenic Intergenic 99289 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 304-417 chr5 58410767 58411027 + 2 NA Intergenic Intergenic 49189 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 294-4 chr1 49122519 49122758 + 2 NA intron (NM_001323575, intron 4 of 12) MIR|SINE|MIR -134773 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 331-10 chr1 88426684 88426917 + 2 NA Intergenic L1MA4A|LINE|L1 -257344 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 355-190 chr16 85664108 85664417 + 2 NA intron (NM_001278184, intron 10 of 14) intron (NM_001278184, intron 10 of 14) 24692 NM_016095 51659 Hs.433180 NM_016095 ENSG00000131153 GINS2 HSPC037|PSF2|Pfs2 GINS complex subunit 2 protein-coding 327-85 chr11 55106393 55106570 + 2 NA Intergenic ALR/Alpha|Satellite|centr -155674 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 318-452 chr5 113308154 113308378 + 2 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) -13328 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 330-225 chr18 39875691 39876015 + 2 NA intron (NR_151703, intron 6 of 8) intron (NR_151703, intron 6 of 8) 34144 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 477-89 chr14 60373428 60373824 + 2 NA Intergenic L1MD1|LINE|L1 50430 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 408-2 chr1 33490080 33490454 + 2 NA intron (NM_145238, intron 5 of 7) MER103C|DNA|hAT-Charlie 17622 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 345-361 chr3 120925011 120925282 + 2 NA intron (NR_145517, intron 2 of 8) intron (NR_145517, intron 2 of 8) 16469 NM_001348343 9515 Hs.477315 NM_014980 ENSG00000145087 STXBP5L LLGL4 syntaxin binding protein 5 like protein-coding 374-423 chrX 57621007 57621324 + 2 NA Intergenic L1PA10|LINE|L1 29329 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 215-241 chr4 171982241 171982413 + 2 NA intron (NM_001034845, intron 2 of 12) AluY|SINE|Alu -168720 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 544-10 chr1 75277161 75277608 + 2 NA intron (NM_001320283, intron 3 of 21) MIRb|SINE|MIR 142996 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 532-286 chr9 102589043 102589385 + 2 NA intron (NR_103830, intron 3 of 4) intron (NR_103830, intron 3 of 4) 69577 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 493-300 chr8 122242529 122242944 + 2 NA Intergenic Intergenic 325908 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 549-125 chr2 221738223 221738726 + 2 NA Intergenic Intergenic -164272 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 355-326 chr3 85258966 85259181 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -126637 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 321-43 chr1 241671084 241671347 + 2 NA intron (NM_001367482, intron 3 of 27) intron (NM_001367482, intron 3 of 27) 18934 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 470-258 chr7 126417509 126417823 + 2 NA Intergenic Intergenic 640518 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 751-72 chr6 140022577 140023101 + 2 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -31578 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 481-232 chr4 145324976 145325428 + 2 NA Intergenic Intergenic 15217 NR_147156 105377466 Hs.405641 NR_147156 ENSG00000272727 LINC02266 - long intergenic non-protein coding RNA 2266 ncRNA 323-418 chr5 75877027 75877267 + 2 NA Intergenic L1M4b|LINE|L1 -159710 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 445-35 chr11 38537018 38537413 + 2 NA Intergenic HERVL-int|LTR|ERVL 109141 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 245-120 chr14 41352900 41353057 + 2 NA Intergenic Intergenic -253878 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 224-138 chr2 47846814 47846951 + 2 NA intron (NM_001190274, intron 1 of 22) MER33|DNA|hAT-Charlie 41837 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 325-298 chr20 2329838 2330017 + 2 NA intron (NM_003245, intron 9 of 12) intron (NM_003245, intron 9 of 12) 33926 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 345-336 chr22 49833902 49834197 + 2 NA Intergenic Intergenic -6176 NM_001304808 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 350-221 chr2 56246918 56247103 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -61240 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 487-70 chr12 124210990 124211325 + 2 NA intron (NM_001347902, intron 3 of 4) intron (NM_001347902, intron 3 of 4) -78007 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 317-38 chr1 242563113 242563411 + 2 NA Intergenic MIRc|SINE|MIR -38565 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 284-317 chr5 42173870 42174069 + 2 NA intron (NR_104635, intron 1 of 3) L2b|LINE|L2 1376 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 334-303 chr2 232190572 232190774 + 2 NA intron (NR_046477, intron 8 of 18) L2c|LINE|L2 18020 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 347-28 chr1 194334670 194334920 + 2 NA Intergenic Intergenic 1030050 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 419-202 chr4 41492960 41493196 + 2 NA intron (NM_001289122, intron 1 of 25) L1MEc|LINE|L1 -45079 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 213-63 chr11 115002720 115002925 + 2 NA Intergenic L1MA9|LINE|L1 324295 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 616-12 chr10 10690281 10690829 + 2 NA intron (NM_001326317, intron 2 of 14) MIR|SINE|MIR 104359 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 254-398 chr8 20899734 20899906 + 2 NA Intergenic L1MB5|LINE|L1 -53813 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 255-73 chr12 24946123 24946281 + 2 NA intron (NM_001178091, intron 1 of 9) intron (NM_001178091, intron 1 of 9) 2899 NM_001178092 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 206-84 chr15 96676728 96676887 + 2 NA Intergenic Intergenic 104847 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 530-275 chr9 37375449 37375782 + 2 NA Intergenic AluSx|SINE|Alu -47081 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 370-85 chr11 48733233 48733442 + 2 NA Intergenic ALR/Alpha|Satellite|centr 244544 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 225-359 chr8 100380523 100380677 + 2 NA Intergenic MamRep1151|LTR?|LTR? -2163 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 408-248 chr4 126043166 126043396 + 2 NA Intergenic L1ME4b|LINE|L1 536022 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 318-151 chr12 119091764 119092020 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 84592 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 178-129 chr7 12288202 12288340 + 2 NA Intergenic Intergenic 76977 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 450-99 chr16 4972191 4972580 + 2 NA intron (NM_014692, intron 2 of 15) L1MB3|LINE|L1 14055 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 290-189 chr19 28920392 28920598 + 2 NA Intergenic MIRc|SINE|MIR -44636 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 250-461 chr9 105751545 105751767 + 2 NA intron (NM_018112, intron 5 of 5) L1PA10|LINE|L1 57115 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 319-278 chr2 195104931 195105171 + 2 NA Intergenic L1PA15|LINE|L1 374456 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 345-341 chr3 15471456 15471791 + 2 NA intron (NM_080539, intron 9 of 15) intron (NM_080539, intron 9 of 15) 24685 NR_036232 100422868 NR_036232 ENSG00000263573 MIR4270 - microRNA 4270 ncRNA 315-101 chr12 31905567 31905769 + 2 NA Intergenic AluSz6|SINE|Alu -18465 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 348-151 chr15 25924292 25924557 + 2 NA intron (NR_040082, intron 1 of 4) L1MA4|LINE|L1 22064 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 859-33 chr5 97265443 97266078 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -82513 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 315-177 chr16 78537193 78537426 + 2 NA intron (NM_001291997, intron 7 of 7) MIR|SINE|MIR 437655 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 472-189 chr20 60894899 60895195 + 2 NA Intergenic Intergenic -184017 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 347-223 chr2 74610131 74610361 + 2 NA intron (NM_001321739, intron 3 of 10) AluJb|SINE|Alu 37791 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 440-149 chr22 17905156 17905507 + 2 NA intron (NM_001122731, intron 1 of 19) intron (NM_001122731, intron 1 of 19) 1555 NM_001136004 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 228-171 chr2 104690496 104690700 + 2 NA Intergenic Intergenic 67121 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 306-99 chr12 18784976 18785181 + 2 NA Intergenic L1M1|LINE|L1 46959 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 318-362 chr3 90344992 90345283 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1237516 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 249-292 chr4 49130807 49130953 + 2 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 144238 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 458-200 chr5 29716398 29716842 + 2 NA Intergenic LTR16A2|LTR|ERVL -163940 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 656-145 chrX 6954642 6955106 + 2 NA Intergenic MER77B|LTR|ERVL -192416 NM_001320750 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 325-129 chr12 73308726 73308988 + 2 NA Intergenic Intergenic 149667 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 217-106 chr13 81450275 81450476 + 2 NA Intergenic MLT2A2|LTR|ERVL -223392 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 357-185 chr2 18023230 18023440 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 144668 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 413-122 chr18 36397115 36397430 + 2 NA intron (NM_001281740, intron 3 of 28) HAL1M8|LINE|L1 99559 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 406-258 chr6 50154042 50154350 + 2 NA Intergenic L1PA15|LINE|L1 -104267 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 395-200 chr21 20050476 20050817 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -150891 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 219-135 chr18 1888204 1888392 + 2 NA Intergenic LTR34|LTR|ERV1 -528669 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 459-54 chr11 114908987 114909361 + 2 NA Intergenic MIRb|SINE|MIR 230647 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 322-409 chr5 9642610 9642803 + 2 NA intron (NR_027112, intron 11 of 12) intron (NR_027112, intron 11 of 12) -12355 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 489-244 chr7 95356695 95357026 + 2 NA Intergenic Intergenic -32328 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 429-279 chr7 80446529 80446903 + 2 NA Intergenic Intergenic 65348 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 511-86 chr16 54889827 54890263 + 2 NA Intergenic Intergenic 38733 NR_110454 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 153-17 chr11 21005267 21005351 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 335723 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 602-78 chr20 50275261 50275677 + 2 NA intron (NM_001278655, intron 1 of 3) intron (NM_001278655, intron 1 of 3) 7983 NM_001278655 100506115 Hs.235484 NM_001278655 SMIM25 GCRL1|LINC01272 small integral membrane protein 25 protein-coding 261-96 chr14 34744211 34744414 + 2 NA Intergenic L1MDa|LINE|L1 -29489 NR_028131 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 339-63 chr10 51614277 51614466 + 2 NA intron (NM_001098512, intron 3 of 17) L1MA4A|LINE|L1 85224 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 209-102 chr14 106861418 106861616 + 2 NA Intergenic Intergenic -10518 NR_049827 100847062 NR_049827 ENSG00000265929 MIR5195 - microRNA 5195 ncRNA 328-428 chr5 28232 28497 + 2 NA Intergenic MER11C|LTR|ERVK -63804 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 477-165 chr2 151894603 151895072 + 2 NA intron (NM_000726, intron 2 of 13) L1M2|LINE|L1 -66416 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 314-142 chr13 36657910 36658199 + 2 NA Intergenic L1MEd|LINE|L1 -15966 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 380-308 chr5 71947848 71948192 + 2 NA Intergenic LTR33|LTR|ERVL -159455 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 231-327 chr7 37464243 37464423 + 2 NA Intergenic Intergenic -15007 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 264-354 chr6 52229381 52229581 + 2 NA Intergenic Intergenic 15019 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 674-105 chr8 133050017 133050506 + 2 NA intron (NM_001045556, intron 4 of 8) intron (NM_001045556, intron 4 of 8) -3680 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 680-87 chr4 56511930 56512350 + 2 NA intron (NM_206919, intron 2 of 3) L2|LINE|L2 6387 NM_001363794 132946 Hs.444449 NM_206919 ENSG00000196503 ARL9 - ADP ribosylation factor like GTPase 9 protein-coding 239-212 chr20 55109100 55109273 + 2 NA Intergenic L1MCa|LINE|L1 -313857 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 354-317 chr4 17288322 17288669 + 2 NA Intergenic Intergenic 32387 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 290-173 chr17 53734003 53734206 + 2 NA Intergenic Intergenic -88823 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 323-208 chr18 73364928 73365104 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 40075 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 218-315 chr8 53535285 53535496 + 2 NA Intergenic Intergenic -11425 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 248-122 chr14 86158865 86159084 + 2 NA Intergenic Intergenic 224296 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 290-72 chr11 27828343 27828584 + 2 NA Intergenic L1MC4a|LINE|L1 -106433 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 435-122 chr2 70377850 70378232 + 2 NA Intergenic Intergenic -75974 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 382-316 chr5 13513619 13513920 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 430711 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 544-44 chr11 39089100 39089574 + 2 NA Intergenic Intergenic 440479 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 318-493 chr6 152707987 152708183 + 2 NA intron (NM_025107, intron 1 of 1) L1MA9|LINE|L1 10190 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 241-230 chr22 47709599 47709827 + 2 NA intron (NR_122046, intron 7 of 8) intron (NR_122046, intron 7 of 8) 78039 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 199-109 chr2 49517367 49517478 + 2 NA Intergenic Intergenic -362895 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 270-27 chr10 16407777 16407973 + 2 NA Intergenic Intergenic -29068 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 264-226 chr2 201765791 201765984 + 2 NA intron (NM_020919, intron 3 of 33) MIR|SINE|MIR 15046 NM_020919 57679 Hs.471096 NM_020919 ENSG00000003393 ALS2 ALS2CR6|ALSJ|IAHSP|PLSJ alsin Rho guanine nucleotide exchange factor ALS2 protein-coding 495-277 chrY 11320520 11320954 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 1100853 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 525-101 chr19 29298418 29298805 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -85460 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 529-177 chr5 92798488 92798842 + 2 NA Intergenic L1MD2|LINE|L1 772678 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 405-123 chr19 16548020 16548293 + 2 NA Intergenic Intergenic -5719 NM_006387 10523 Hs.740364 NM_006387 ENSG00000085872 CHERP DAN16|SCAF6|SRA1 calcium homeostasis endoplasmic reticulum protein protein-coding 208-95 chr18 6278018 6278207 + 2 NA intron (NM_001365769, intron 4 of 16) LTR66|LTR|ERVL 21368 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 539-137 chr22 33546409 33546856 + 2 NA intron (NM_133642, intron 6 of 14) AluSx|SINE|Alu -109963 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 332-5 chr1 38765502 38765743 + 2 NA Intergenic Intergenic 94150 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 289-202 chr19 52619095 52619378 + 2 NA intron (NM_001277949, intron 3 of 4) intron (NM_001277949, intron 3 of 4) 19155 NM_001105550 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 324-116 chr12 41165638 41165910 + 2 NA Intergenic Intergenic -22546 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 240-218 chr2 80909891 80910050 + 2 NA Intergenic Intergenic 556976 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 354-48 chr10 52166653 52166832 + 2 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 147386 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 516-14 chr1 213245408 213245743 + 2 NA intron (NM_001136138, intron 11 of 13) intron (NM_001136138, intron 11 of 13) 194334 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 279-354 chr6 34015616 34015807 + 2 NA Intergenic Intergenic -15660 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 516-175 chr3 81174924 81175342 + 2 NA Intergenic L2a|LINE|L2 181265 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 237-262 chr4 36917865 36918048 + 2 NA Intergenic Intergenic -83823 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 292-401 chr7 31843137 31843387 + 2 NA intron (NM_001191059, intron 10 of 18) L1ME2|LINE|L1 156047 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 344-233 chr2 44734730 44735033 + 2 NA intron (NM_024766, intron 7 of 10) L1MEc|LINE|L1 204007 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 891-42 chr8 134946134 134946900 + 2 NA Intergenic Charlie15a|DNA|hAT-Charlie 96582 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 338-479 chr6 142877677 142877935 + 2 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 67370 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 247-323 chr5 52490663 52490864 + 2 NA Intergenic MIRc|SINE|MIR -297153 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 304-387 chr4 102861783 102862038 + 2 NA intron (NM_181890, intron 1 of 7) intron (NM_181890, intron 1 of 7) 6983 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 297-69 chr11 29011899 29012184 + 2 NA Intergenic L1MA10|LINE|L1 -534493 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 299-90 chr11 112862784 112862987 + 2 NA Intergenic L1MEi|LINE|L1 -98535 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 416-168 chr2 58822248 58822507 + 2 NA intron (NR_033873, intron 2 of 13) L1MA3|LINE|L1 301624 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 247-434 chr9 103633085 103633283 + 2 NA Intergenic Intergenic -308151 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 350-68 chr11 16008842 16009138 + 2 NA intron (NM_017508, intron 12 of 14) intron (NM_017508, intron 12 of 14) -39369 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 196-11 chr1 91992895 91993038 + 2 NA intron (NM_001726, intron 14 of 18) intron (NM_001726, intron 14 of 18) -37019 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 670-84 chr4 30442524 30442966 + 2 NA Intergenic Intergenic -277624 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 225-212 chr3 95127887 95128065 + 2 NA Intergenic Intergenic 189713 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 193-143 chr3 148586517 148586682 + 2 NA Intergenic Intergenic -111272 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 350-279 chr20 54862407 54862597 + 2 NA Intergenic Intergenic 386909 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 282-355 chr4 149862502 149862653 + 2 NA Intergenic L1MA4|LINE|L1 -46734 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 314-132 chr12 64541916 64542098 + 2 NA Intergenic Intergenic -68488 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 647-27 chr14 53919570 53920065 + 2 NA Intergenic Intergenic 28667 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 316-544 chr8 67575261 67575519 + 2 NA intron (NM_020361, intron 2 of 10) L1MA7|LINE|L1 170970 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 282-234 chr2 163557686 163557956 + 2 NA Intergenic Intergenic 178187 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 187-87 chr2 143882023 143882140 + 2 NA Intergenic Intergenic -54986 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 452-19 chr1 219485640 219485947 + 2 NA intron (NR_135822, intron 1 of 3) L1MEf|LINE|L1 71531 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 546-33 chr11 11087263 11087789 + 2 NA Intergenic Intergenic 229309 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 144-66 chr4 58540060 58540140 + 2 NA Intergenic L1MCa|LINE|L1 -3772 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 181-119 chr5 26518935 26519065 + 2 NA Intergenic L1ME1|LINE|L1 519586 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 297-71 chr11 40580522 40580713 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -287487 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 337-13 chr1 95584670 95584898 + 2 NA Intergenic Intergenic 74668 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 361-237 chr2 160728687 160728921 + 2 NA Intergenic L1PA17|LINE|L1 -234997 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 338-567 chr8 137208254 137208476 + 2 NA Intergenic (ATCTCT)n|Simple_repeat|Simple_repeat 205223 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 230-239 chr3 137839186 137839365 + 2 NA Intergenic MIRc|SINE|MIR 67364 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 703-77 chr6 24945885 24946451 + 2 NA intron (NM_001286446, intron 1 of 13) AluSx|SINE|Alu -10208 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 324-248 chr2 28482718 28483022 + 2 NA Intergenic L1MB3|LINE|L1 -13190 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 440-42 chr12 23687035 23687320 + 2 NA intron (NM_152989, intron 9 of 17) intron (NM_152989, intron 9 of 17) -102591 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 303-374 chr5 124080814 124081107 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 357560 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 271-85 chr12 7632004 7632254 + 2 NA Intergenic L1PB4|LINE|L1 33779 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 495-119 chr2 153579299 153579710 + 2 NA Intergenic Intergenic -100742 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 426-257 chr6 85813467 85813731 + 2 NA Intergenic Intergenic -134866 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 618-127 chr8 50271068 50271541 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 107173 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 333-440 chr5 32885219 32885392 + 2 NA Intergenic L1M4|LINE|L1 -62138 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 483-182 chr4 31238409 31238767 + 2 NA Intergenic LTR1F1|LTR|ERV1 67444 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 230-124 chr15 23808996 23809187 + 2 NA Intergenic Intergenic -121786 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 473-303 chr9 126042086 126042409 + 2 NA Intergenic L1MB7|LINE|L1 233668 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 243-165 chr17 52013785 52013941 + 2 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 144851 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 243-12 chr1 85383798 85384013 + 2 NA intron (NM_001134445, intron 2 of 6) Tigger1|DNA|TcMar-Tigger 20601 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 455-113 chr19 52066176 52066566 + 2 NA exon (NM_001352298, exon 6 of 6) exon (NM_001352298, exon 6 of 6) -17533 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 324-228 chr18 52239359 52239591 + 2 NA Intergenic Intergenic -100722 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 438 chr1 8572318 8572726 + 2 NA intron (NM_001042681, intron 4 of 22) intron (NM_001042681, intron 4 of 22) -77609 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 314-577 chr8 111267345 111267548 + 2 NA Intergenic Intergenic -31243 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 569-116 chr3 22579630 22580139 + 2 NA Intergenic Intergenic 622694 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 354-99 chr12 11857176 11857508 + 2 NA intron (NM_001987, intron 4 of 7) intron (NM_001987, intron 4 of 7) -192519 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 265-25 chr10 6379009 6379172 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack 28774 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 230-235 chr3 103080613 103080789 + 2 NA Intergenic LTR78|LTR|ERV1 443415 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 381-200 chr2 114012084 114012348 + 2 NA intron (NR_148509, intron 1 of 1) MER44B|DNA|TcMar-Tigger -32232 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 386-153 chr19 52470510 52470855 + 2 NA intron (NM_001366182, intron 3 of 5) MLT2B3|LTR|ERVL 17129 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 1118-17 chr3 127501320 127502113 + 2 NA intron (NR_125397, intron 5 of 6) L1MEg|LINE|L1 36064 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 786-53 chr5 94065236 94065757 + 2 NA intron (NM_001163418, intron 1 of 8) AluJb|SINE|Alu 46167 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 291-341 chr5 31124443 31124678 + 2 NA Intergenic L2a|LINE|L2 -69126 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 255-353 chr6 61689829 61689999 + 2 NA intron (NR_146874, intron 8 of 13) intron (NR_146874, intron 8 of 13) 115784 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 246-338 chr5 149776118 149776333 + 2 NA intron (NM_001172699, intron 1 of 10) MIR3|SINE|MIR 4285 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 321-49 chr10 23788669 23788953 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 94084 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 341-101 chr11 116004038 116004313 + 2 NA Intergenic L1ME3Cz|LINE|L1 -243975 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 216-217 chr3 59919170 59919348 + 2 NA intron (NR_135491, intron 5 of 6) L3|LINE|CR1 161650 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 329-475 chr5 131771877 131772146 + 2 NA intron (NM_133372, intron 1 of 17) intron (NM_133372, intron 1 of 17) 25006 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 257-81 chr12 2636305 2636511 + 2 NA intron (NM_001129836, intron 31 of 46) intron (NM_001129836, intron 31 of 46) 35812 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 306-19 chr1 86052775 86053061 + 2 NA intron (NM_152890, intron 10 of 59) intron (NM_152890, intron 10 of 59) 103553 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 531-246 chr8 124935010 124935363 + 2 NA Intergenic Intergenic -6822 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 515-173 chr3 185067134 185067476 + 2 NA Intergenic Intergenic 85755 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 421-109 chr17 61504811 61505134 + 2 NA Intergenic Intergenic 48484 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 223-362 chr9 32774597 32774750 + 2 NA Intergenic L1M4c|LINE|L1 -8867 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 290-76 chr11 55661287 55661446 + 2 NA Intergenic Intergenic -3801 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 378-353 chr5 155958280 155958542 + 2 NA Intergenic MIR|SINE|MIR -368346 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 253-438 chrX 40526360 40526495 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -54543 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 220-213 chr3 1566945 1567138 + 2 NA Intergenic Intergenic 474017 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 222-342 chr7 52149356 52149486 + 2 NA Intergenic Intergenic -756165 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 251-374 chr7 64603893 64604071 + 2 NA intron (NR_077227, intron 2 of 2) BSR/Beta|Satellite|Satellite 21372 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 345-157 chr14 75607573 75607855 + 2 NA intron (NM_001195283, intron 1 of 9) MIRc|SINE|MIR 2174 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 418-232 chr6 4481496 4481776 + 2 NA Intergenic Intergenic -7162 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 340 chr1 14049462 14049691 + 2 NA Intergenic Intergenic 300161 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 233-327 chr6 34633453 34633679 + 2 NA intron (NM_022758, intron 2 of 3) L1M4a2|LINE|L1 -62588 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 127-14 chr10 82565132 82565225 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -332258 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 713-66 chr5 12055973 12056529 + 2 NA Intergenic Intergenic -151805 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 264-444 chr9 86767935 86768181 + 2 NA Intergenic MER74B|LTR|ERVL 179448 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 133-61 chr5 4772602 4772729 + 2 NA promoter-TSS (NR_104619) promoter-TSS (NR_104619) -816 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 324-433 chr5 110357823 110358002 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 156003 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 386-113 chr15 27637757 27638082 + 2 NA Intergenic Intergenic 461396 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 231-129 chr17 62716457 62716667 + 2 NA intron (NM_001288780, intron 9 of 10) intron (NM_001288780, intron 9 of 10) 10356 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 292-178 chr18 450022 450307 + 2 NA intron (NM_130386, intron 2 of 9) L2|LINE|L2 50537 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 374-138 chr17 13289066 13289383 + 2 NA Intergenic Intergenic 17536 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 444-265 chr8 117296882 117297253 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 162072 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 272-453 chr8 104574800 104575020 + 2 NA intron (NM_013437, intron 1 of 6) L2c|LINE|L2 14114 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 290-101 chr12 20063049 20063327 + 2 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 48503 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 180-70 chr18 65301346 65301448 + 2 NA Intergenic Intergenic -448855 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 316-337 chr22 49292954 49293261 + 2 NA Intergenic Intergenic 250359 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 495-79 chr16 79934532 79934908 + 2 NA Intergenic Intergenic 139471 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 551-121 chr3 95427667 95428197 + 2 NA Intergenic L1ME3|LINE|L1 255261 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 602-131 chr8 78612643 78613025 + 2 NA Intergenic Intergenic -53255 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 255-292 chr4 54526402 54526618 + 2 NA Intergenic L2a|LINE|L2 80621 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 252-74 chr11 85199875 85200102 + 2 NA intron (NM_001142699, intron 4 of 27) L1MA4|LINE|L1 -276567 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 264-307 chr5 9454043 9454230 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -57197 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 303-249 chr20 24082060 24082233 + 2 NA Intergenic Intergenic -93367 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 286-22 chr1 172770133 172770337 + 2 NA Intergenic MER20|DNA|hAT-Charlie 111132 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 527-264 chr8 83019544 83020027 + 2 NA Intergenic L1MEg|LINE|L1 107681 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 268-207 chr2 126654264 126654476 + 2 NA Intergenic Intergenic -1565 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 249-91 chr12 40142217 40142437 + 2 NA Intergenic Intergenic -13912 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 362-84 chr11 21693902 21694152 + 2 NA Intergenic L1PA7|LINE|L1 -499058 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 322-305 chr21 34158012 34158297 + 2 NA Intergenic AluSx1|SINE|Alu -22523 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 382-274 chr3 111844847 111845057 + 2 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -14228 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 384-78 chr12 47494618 47494933 + 2 NA Intergenic Intergenic 79767 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 225-379 chr8 141647832 141648006 + 2 NA Intergenic MIR|SINE|MIR 138394 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 220-99 chr13 48842569 48842743 + 2 NA Intergenic Intergenic -133256 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 144-14 chr11 30663093 30663211 + 2 NA Intergenic MIRb|SINE|MIR -76799 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 310-244 chr2 83344262 83344498 + 2 NA Intergenic L1ME1|LINE|L1 -178434 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 211-175 chr22 37033360 37033512 + 2 NA Intergenic Intergenic -13253 NM_001270483 7263 Hs.474783 NM_003312 ENSG00000128311 TST RDS thiosulfate sulfurtransferase protein-coding 377-429 chr9 79913137 79913381 + 2 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) -61764 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 605-119 chr8 87026253 87026669 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 160046 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 326-516 chr8 35631358 35631678 + 2 NA intron (NM_001322818, intron 4 of 16) intron (NM_001322818, intron 4 of 16) 78802 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 305-244 chr2 34429672 34429883 + 2 NA Intergenic Intergenic -247780 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 319-339 chr3 106721674 106721896 + 2 NA Intergenic LTR28C|LTR|ERV1 518853 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 583-107 chr21 41336487 41336915 + 2 NA intron (NM_058186, intron 2 of 7) L1MA8|LINE|L1 19900 NM_058186 54097 Hs.473877 NM_058186 ENSG00000183844 FAM3B 2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44 family with sequence similarity 3 member B protein-coding 827-61 chrX 74175467 74176156 + 2 NA intron (NR_028379, intron 5 of 6) L1M2|LINE|L1 42650 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 279-325 chr5 52118339 52118538 + 2 NA Intergenic L1MB1|LINE|L1 110407 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 433-245 chr6 67831089 67831380 + 2 NA Intergenic L2a|LINE|L2 -224117 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 444-76 chr15 73324603 73325035 + 2 NA intron (NM_005477, intron 6 of 7) intron (NM_005477, intron 6 of 7) 24909 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 504-158 chr21 32091011 32091383 + 2 NA Intergenic Intergenic -4902 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 349-304 chr21 27597794 27597995 + 2 NA Intergenic Intergenic -124485 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 448-248 chr6 159258109 159258388 + 2 NA intron (NM_032532, intron 18 of 22) L2b|LINE|L2 -88241 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 339-512 chr6 164421508 164421698 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 400460 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 202-20 chr1 235334085 235334220 + 2 NA intron (NR_036605, intron 1 of 2) intron (NR_036605, intron 1 of 2) 5582 NR_036605 9453 Hs.730768 NM_004837 ENSG00000152904 GGPS1 GGPPS|GGPPS1 geranylgeranyl diphosphate synthase 1 protein-coding 339-524 chr7 31032881 31033196 + 2 NA Intergenic L2a|LINE|L2 -19270 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 260-272 chr3 84198579 84198749 + 2 NA Intergenic L1M2|LINE|L1 670911 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 246-65 chr11 40656611 40656820 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -363585 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 191-130 chr22 47228922 47229055 + 2 NA Intergenic L1MB2|LINE|L1 -116583 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 318-325 chr21 14799609 14799768 + 2 NA Intergenic L1MA2|LINE|L1 118980 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 197-118 chr20 54023703 54023859 + 2 NA intron (NM_001366297, intron 4 of 8) intron (NM_001366297, intron 4 of 8) 35239 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 707-100 chr8 36253726 36254359 + 2 NA Intergenic Intergenic -530332 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 395-267 chr5 35827177 35827512 + 2 NA Intergenic Intergenic -29547 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 379-347 chr8 101286443 101286710 + 2 NA Intergenic MIRb|SINE|MIR -80512 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 426-306 chr8 140223565 140223870 + 2 NA intron (NM_001160372, intron 16 of 22) intron (NM_001160372, intron 16 of 22) -123182 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 614-101 chr5 89749106 89749579 + 2 NA Intergenic L1MEc|LINE|L1 267378 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 277-235 chr21 20001104 20001312 + 2 NA Intergenic L1MC4a|LINE|L1 -101453 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 132-39 chr19 43867509 43867588 + 2 NA Intergenic L1ME2|LINE|L1 12588 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 474-77 chr14 37212873 37213184 + 2 NA intron (NM_001195296, intron 2 of 14) L1M1|LINE|L1 15091 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 444-224 chr6 120628331 120628710 + 2 NA Intergenic L1MA9|LINE|L1 613341 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 264-17 chr1 177000312 177000544 + 2 NA intron (NM_207108, intron 8 of 21) L3|LINE|CR1 29017 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 213-123 chr18 66387228 66387385 + 2 NA Intergenic Intergenic 216784 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 293-31 chr10 26327392 26327554 + 2 NA Intergenic Intergenic 110699 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 498-262 chr8 23886133 23886440 + 2 NA Intergenic MIRb|SINE|MIR -31480 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 187-153 chr7 18104475 18104599 + 2 NA intron (NM_001204144, intron 1 of 12) intron (NM_001204144, intron 1 of 12) 17712 NM_001321872 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 141-12 chr10 62244517 62244648 + 2 NA intron (NM_001282941, intron 3 of 4) intron (NM_001282941, intron 3 of 4) 24262 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 229-112 chr14 55489594 55489777 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -49140 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 162-38 chr15 38074696 38074796 + 2 NA Intergenic Intergenic -1756 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 221-65 chr12 106619279 106619467 + 2 NA intron (NM_001206691, intron 2 of 17) L1ME3|LINE|L1 18225 NM_001206691 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 570-136 chr3 59650365 59650755 + 2 NA intron (NR_149028, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 7937 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 233-375 chr8 91554496 91554637 + 2 NA Intergenic Intergenic 305247 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 203-172 chr4 169872618 169872732 + 2 NA Intergenic MIR|SINE|MIR 103227 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LINC02275 - long intergenic non-protein coding RNA 2275 ncRNA 488-86 chr14 89192195 89192463 + 2 NA intron (NM_001085471, intron 4 of 6) (ATATATA)n|Simple_repeat|Simple_repeat 224904 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 142 chr1 70927981 70928115 + 2 NA intron (NR_028293, intron 2 of 4) intron (NR_028293, intron 2 of 4) -118458 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 127-79 chr8 116168590 116168672 + 2 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 156428 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 256-29 chr1 243944770 243944945 + 2 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 27455 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 580-175 chr7 8186918 8187253 + 2 NA intron (NM_001350836, intron 7 of 14) Tigger3b|DNA|TcMar-Tigger 74967 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 312-356 chr3 196983770 196983955 + 2 NA Intergenic Intergenic -15029 NM_025163 80235 Hs.518403 NM_025163 ENSG00000119227 PIGZ GPI-MT-IV|PIG-Z|SMP3 phosphatidylinositol glycan anchor biosynthesis class Z protein-coding 377-64 chr11 44797092 44797435 + 2 NA intron (NM_130783, intron 2 of 9) MIRc|SINE|MIR 70301 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 280-149 chr16 60334156 60334382 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 25524 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 574-169 chr7 79025921 79026325 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 17135 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 704-8 chr1 237936473 237936991 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -45810 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 411-115 chr17 11966121 11966412 + 2 NA intron (NM_001372, intron 68 of 68) L1M4|LINE|L1 31106 NM_144680 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 483-161 chr3 28341902 28342339 + 2 NA intron (NM_001271650, intron 1 of 8) Tigger20a|DNA|TcMar-Tigger -6601 NR_136708 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 501-125 chr2 216883920 216884343 + 2 NA Intergenic Intergenic 13359 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 308-286 chr3 13142433 13142727 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -69151 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 407-85 chr14 78175974 78176226 + 2 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 5727 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 268-68 chr11 71078650 71078814 + 2 NA intron (NM_012309, intron 7 of 24) MER66B|LTR|ERV1 146064 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 124-55 chr4 131992800 131992897 + 2 NA Intergenic Intergenic 228010 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 348-184 chr17 53954463 53954797 + 2 NA Intergenic Intergenic 131703 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 624-60 chr2 73649861 73650463 + 2 NA intron (NR_003683, intron 1 of 6) L1ME4a|LINE|L1 5243 NR_003683 200420 Hs.739204 NM_145300 ENSG00000163016 ALMS1P1 ALMS1L|ALMS1P ALMS1 pseudogene 1 pseudo 443-63 chr12 30154714 30155097 + 2 NA Intergenic Intergenic -370146 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 722-46 chr20 48444853 48445344 + 2 NA Intergenic L1MEf|LINE|L1 85187 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 298-141 chr15 54471033 54471240 + 2 NA intron (NM_001329919, intron 18 of 31) L1MA7|LINE|L1 458488 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 353-401 chr5 25393017 25393330 + 2 NA Intergenic Intergenic 202220 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 449-91 chr16 31932276 31932566 + 2 NA Intergenic L1M4c|LINE|L1 58614 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 229-74 chr11 105982329 105982497 + 2 NA TTS (NM_000829) TTS (NM_000829) 39827 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 241-52 chr10 111632366 111632502 + 2 NA Intergenic Intergenic 518143 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 425-293 chr8 20648247 20648639 + 2 NA Intergenic Intergenic -33517 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 330-413 chr5 33021712 33021890 + 2 NA Intergenic Intergenic 74358 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 241-28 chr1 239393794 239393985 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 7321 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 260-435 chr8 89111567 89111744 + 2 NA Intergenic L1MA9|LINE|L1 646056 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 350-568 chrX 57795636 57795913 + 2 NA Intergenic L1MB4|LINE|L1 114859 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 121-13 chr15 86844484 86844569 + 2 NA intron (NM_152336, intron 23 of 24) L1ME1|LINE|L1 -88354 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 474-12 chr1 147885735 147886200 + 2 NA Intergenic Intergenic -16828 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 227-118 chr15 61894511 61894681 + 2 NA intron (NM_001018088, intron 66 of 81) L1MA4|LINE|L1 164678 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 697-17 chr12 19995303 19995845 + 2 NA Intergenic Intergenic -19111 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 485-150 chr2 156224173 156224579 + 2 NA intron (NR_110250, intron 1 of 3) L1PA11|LINE|L1 30555 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 575-160 chr5 164883908 164884311 + 2 NA Intergenic Intergenic 413830 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 245-108 chr12 126440001 126440177 + 2 NA intron (NR_147498, intron 2 of 3) intron (NR_147498, intron 2 of 3) -2392 NR_130748 100128554 Hs.408255 NR_015398 ENSG00000214043 LINC02347 - long intergenic non-protein coding RNA 2347 ncRNA 429-153 chr2 78932004 78932272 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -93564 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 353-167 chr15 97254071 97254290 + 2 NA Intergenic Intergenic 267631 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 268-376 chr7 77816452 77816709 + 2 NA intron (NM_001366088, intron 1 of 11) L1MA5A|LINE|L1 17609 NM_001366086 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 459-11 chr1 100926440 100926774 + 2 NA intron (NM_133496, intron 8 of 10) MSTA|LTR|ERVL-MaLR 30517 NM_001144884 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 210-31 chr10 58849567 58849747 + 2 NA Intergenic L1MC1|LINE|L1 134642 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 234-156 chr2 5043611 5043812 + 2 NA Intergenic Intergenic -387489 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 268-48 chr10 51771761 51772024 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -72297 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 337-214 chr18 4510319 4510588 + 2 NA Intergenic Intergenic -55146 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 374-5 chr1 62951194 62951551 + 2 NA Intergenic Intergenic 59553 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 409-45 chr11 121837547 121837786 + 2 NA Intergenic L1MA4|LINE|L1 262178 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 295-265 chr21 24064598 24064818 + 2 NA Intergenic Intergenic 256669 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 316-583 chr9 74244640 74244807 + 2 NA Intergenic Intergenic -126808 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 615-12 chr10 98138076 98138523 + 2 NA intron (NM_001351012, intron 1 of 8) intron (NM_001351012, intron 1 of 8) 3642 NM_001351012 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 159-14 chr10 64683588 64683705 + 2 NA Intergenic Intergenic -141882 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 407-66 chr12 63222299 63222584 + 2 NA Intergenic Intergenic -69631 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 715-9 chr11 79530297 79530770 + 2 NA Intergenic AluSz|SINE|Alu -89503 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 151-80 chr7 64091300 64091395 + 2 NA Intergenic Intergenic 45913 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 323-371 chr4 63685995 63686201 + 2 NA Intergenic MLT2F|LTR|ERVL 723352 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 331-254 chr2 39593173 39593347 + 2 NA intron (NR_037875, intron 5 of 5) AluSz|SINE|Alu -72238 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 369-298 chr4 98167565 98167887 + 2 NA Intergenic MER21B|LTR|ERVL -24250 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 285-26 chr10 9939016 9939162 + 2 NA Intergenic L1MD2|LINE|L1 -119633 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 125-3 chr1 238969122 238969203 + 2 NA Intergenic L1M5|LINE|L1 -417406 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 466-247 chr7 33153660 33154055 + 2 NA intron (NM_001348038, intron 3 of 22) intron (NM_001348038, intron 3 of 22) 24293 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 334-79 chr11 13516135 13516461 + 2 NA Intergenic L1MB8|LINE|L1 -20123 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 266-442 chr8 139128088 139128305 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -214155 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 270-163 chr18 38776515 38776713 + 2 NA Intergenic L2|LINE|L2 845561 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 473-114 chr18 64497963 64498250 + 2 NA Intergenic AluSx|SINE|Alu -238051 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 611-74 chr2 45920946 45921458 + 2 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 269527 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 483-46 chr12 26611545 26611880 + 2 NA intron (NM_002223, intron 26 of 56) intron (NM_002223, intron 26 of 56) 221482 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 250-376 chr6 93531003 93531203 + 2 NA Intergenic Intergenic -111521 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 556-215 chr8 10522447 10522797 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -2910 NM_001197020 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 207-79 chr14 49960912 49961093 + 2 NA Intergenic Intergenic -5397 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 335-361 chr3 118247003 118247274 + 2 NA Intergenic L2a|LINE|L2 -394630 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 285-364 chr6 55393662 55393862 + 2 NA intron (NM_207410, intron 6 of 8) L2|LINE|L2 66293 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 411-230 chr5 92433973 92434238 + 2 NA Intergenic L1ME3A|LINE|L1 -1050788 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 212-75 chr11 134601042 134601229 + 2 NA Intergenic L1MA9|LINE|L1 -134810 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 822-10 chr12 23497774 23498303 + 2 NA Intergenic Intergenic 86548 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 164-29 chr12 113618832 113618991 + 2 NA Intergenic MIR|SINE|MIR 146908 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 227-404 chr9 113031091 113031250 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -18978 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 315-311 chr3 87667058 87667301 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -125527 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 153-49 chr2 36204164 36204254 + 2 NA Intergenic Intergenic 151361 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 302-29 chr1 201474378 201474555 + 2 NA Intergenic L1MC2|LINE|L1 -5278 NM_012396 23612 Hs.153944 NM_012396 ENSG00000174307 PHLDA3 TIH1 pleckstrin homology like domain family A member 3 protein-coding 520-105 chr16 25944617 25945013 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -80422 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 551-169 chr5 132793658 132794098 + 2 NA Intergenic HAL1ME|LINE|L1 -16009 NM_001098813 23176 Hs.522057 NM_015146 ENSG00000164402 SEPTIN8 SEP2|SEPT8 septin 8 protein-coding 351-294 chr3 43638507 43638806 + 2 NA intron (NM_001346469, intron 1 of 11) intron (NM_001346469, intron 1 of 11) -16579 NM_001204831 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 348-186 chr17 56610873 56611110 + 2 NA Intergenic L2c|LINE|L2 17292 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 323-438 chr5 156727168 156727473 + 2 NA intron (NM_001128209, intron 6 of 7) MER31A|LTR|ERV1 -122975 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 410-195 chr3 95245833 95246198 + 2 NA Intergenic Intergenic 307752 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 314-345 chr20 55834037 55834254 + 2 NA Intergenic Intergenic 171374 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 480-322 chrX 83115238 83115645 + 2 NA Intergenic Intergenic -392849 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 305-71 chr10 76775323 76775543 + 2 NA Intergenic LTR1D1|LTR|ERV1 -112611 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 230-106 chr14 42135310 42135443 + 2 NA Intergenic Intergenic 528520 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 490-175 chr22 28287028 28287503 + 2 NA intron (NM_001145418, intron 5 of 22) L1M5|LINE|L1 -172604 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 266-367 chr6 76023922 76024113 + 2 NA intron (NM_001563, intron 5 of 16) intron (NM_001563, intron 5 of 16) 48645 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 226-273 chr5 17452034 17452187 + 2 NA intron (NR_134270, intron 1 of 2) intron (NR_134270, intron 1 of 2) 8100 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 247-421 chr8 143498437 143498640 + 2 NA intron (NM_015117, intron 4 of 11) intron (NM_015117, intron 4 of 11) 7710 NR_145785 109623485 NR_145785 SNORD149 - small nucleolar RNA, C/D box 149 snoRNA 590-127 chr4 179484625 179484994 + 2 NA Intergenic Intergenic -1576873 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 248-259 chr3 180865559 180865782 + 2 NA intron (NR_109986, intron 1 of 13) L1MB8|LINE|L1 4508 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 217-163 chr19 12040676 12040827 + 2 NA intron (NR_134929, intron 2 of 2) AluSc5|SINE|Alu -5010 NM_001080411 163059 Hs.667776 NM_152602 ENSG00000197647 ZNF433 - zinc finger protein 433 protein-coding 570-78 chr16 53245399 53245838 + 2 NA exon (NM_025134, exon 15 of 39) exon (NM_025134, exon 15 of 39) 37167 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 342-561 chr9 105351932 105352141 + 2 NA intron (NM_001330731, intron 5 of 15) AluJo|SINE|Alu -95998 NM_001145313 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 401-234 chr4 92139059 92139396 + 2 NA Intergenic Intergenic 138075 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 375-446 chr9 71656225 71656580 + 2 NA Intergenic Intergenic 112111 NM_001349784 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 396-377 chrX 30936779 30937155 + 2 NA Intergenic L1ME5|LINE|L1 -47713 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 protein-coding 341-553 chr8 141849777 141850065 + 2 NA Intergenic MER31A|LTR|ERV1 -63608 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 564-77 chr17 68642141 68642540 + 2 NA intron (NR_110825, intron 1 of 4) intron (NR_110825, intron 1 of 4) 14186 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 318-157 chr13 47015565 47015847 + 2 NA Intergenic MIR|SINE|MIR -118630 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 358-512 chr9 29043605 29043934 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -154814 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 260-143 chr15 40170607 40170797 + 2 NA intron (NM_001211, intron 4 of 22) intron (NM_001211, intron 4 of 22) 9693 NM_001211 701 Hs.513645 NM_001211 ENSG00000156970 BUB1B BUB1beta|BUBR1|Bub1A|MAD3L|MVA1|SSK1|hBUBR1 BUB1 mitotic checkpoint serine/threonine kinase B protein-coding 334-361 chr3 117254615 117254794 + 2 NA Intergenic Intergenic 333273 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 379-139 chr19 37142486 37142715 + 2 NA Intergenic AluSc8|SINE|Alu 29836 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 418-79 chr15 56969776 56970098 + 2 NA intron (NM_207038, intron 3 of 19) L2|LINE|L2 50492 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 402-93 chr15 51337018 51337248 + 2 NA intron (NM_031226, intron 1 of 10) intron (NM_031226, intron 1 of 10) 1463 NM_000103 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 162-40 chr16 25310306 25310420 + 2 NA Intergenic L1M2|LINE|L1 -52518 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 295-231 chr2 160078344 160078614 + 2 NA Intergenic Intergenic -15864 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 287-37 chr1 232172224 232172400 + 2 NA Intergenic Intergenic 246478 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 246-71 chr11 74221229 74221447 + 2 NA intron (NM_001271593, intron 3 of 13) intron (NM_001271593, intron 3 of 13) 50049 NM_001271593 51400 Hs.503251 NM_016147 ENSG00000214517 PPME1 ABDH19|PME-1 protein phosphatase methylesterase 1 protein-coding 359-30 chr1 172631172 172631514 + 2 NA Intergenic Intergenic -27665 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 529-30 chr11 32693476 32693847 + 2 NA intron (NM_001008391, intron 6 of 17) L1P1|LINE|L1 100997 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 224-198 chr3 53117180 53117349 + 2 NA intron (NM_052859, intron 6 of 12) intron (NM_052859, intron 6 of 12) 13171 NM_052859 91869 Hs.631910 NM_052859 ENSG00000163933 RFT1 CDG1N RFT1 homolog protein-coding 674-90 chr6 119044166 119044648 + 2 NA intron (NM_001288576, intron 1 of 15) AluJr4|SINE|Alu 24736 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 190-117 chr3 28486344 28486454 + 2 NA intron (NM_001040432, intron 5 of 9) L1MC1|LINE|L1 -88879 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 324-466 chr6 72715406 72715644 + 2 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 85030 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 170-78 chr2 205449681 205449827 + 2 NA intron (NM_057177, intron 19 of 21) intron (NM_057177, intron 19 of 21) -232746 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 272-307 chr4 63824588 63824765 + 2 NA Intergenic L1M2|LINE|L1 584774 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 407-271 chr6 22022111 22022383 + 2 NA intron (NR_015410, intron 7 of 11) MLT1D|LTR|ERVL-MaLR 124946 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 317-389 chr5 63242348 63242642 + 2 NA Intergenic Intergenic 663676 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 293-260 chr3 59655455 59655642 + 2 NA intron (NR_149028, intron 1 of 3) intron (NR_149028, intron 1 of 3) 2949 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 210-187 chr4 18860522 18860701 + 2 NA Intergenic Intergenic -838736 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 250-41 chr10 58935795 58935941 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -63650 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 285-173 chr19 27365365 27365590 + 2 NA Intergenic ALR/Alpha|Satellite|centr -427954 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 260-121 chr13 83607920 83608083 + 2 NA Intergenic Intergenic 274392 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 312-158 chr15 46370698 46371004 + 2 NA Intergenic Intergenic 665656 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 247-241 chr21 19977085 19977272 + 2 NA Intergenic Intergenic -77423 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 610-132 chr5 9782726 9783174 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -71427 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 234-83 chr13 20935995 20936222 + 2 NA Intergenic AluY|SINE|Alu 13320 NR_104058 101930748 Hs.637638 NR_104058 ENSG00000233780 LINC00367 - long intergenic non-protein coding RNA 367 ncRNA 255-282 chr4 9923226 9923393 + 2 NA intron (NM_001001290, intron 7 of 12) LTR18B|LTR|ERVL 98188 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 328-394 chr4 41460498 41460727 + 2 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) -77545 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 535-194 chr5 9352052 9352576 + 2 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -159019 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 344-44 chr10 29652726 29652996 + 2 NA intron (NM_001323599, intron 3 of 38) L1MB8|LINE|L1 -17890 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 392-251 chr5 39418419 39418698 + 2 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 6422 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 280-319 chr5 41203660 41203907 + 2 NA intron (NM_001115131, intron 1 of 17) MIR3|SINE|MIR 9749 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 227-199 chr20 5451447 5451638 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -5794 NR_038240 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 497-45 chr11 95362886 95363362 + 2 NA Intergenic MIRb|SINE|MIR -130649 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 189-41 chr12 56621432 56621586 + 2 NA intron (NM_013449, intron 1 of 28) MIRb|SINE|MIR 8817 NM_001300905 11176 Hs.314263 NM_013449 ENSG00000076108 BAZ2A TIP5|WALp3 bromodomain adjacent to zinc finger domain 2A protein-coding 189-93 chr2 108307336 108307488 + 2 NA intron (NM_001056, intron 7 of 7) L1MC4a|LINE|L1 -14826 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 277-285 chr4 57576218 57576453 + 2 NA Intergenic Intergenic 150463 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 530-39 chr11 29373318 29373704 + 2 NA Intergenic L1M4b|LINE|L1 -220902 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 303-159 chr16 51432220 51432416 + 2 NA Intergenic Intergenic -281046 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 432-82 chr14 66417368 66417794 + 2 NA Intergenic L1MA8|LINE|L1 -68790 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 434-137 chr2 42130117 42130411 + 2 NA Intergenic L2a|LINE|L2 -39089 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 264-4 chr1 45959393 45959568 + 2 NA intron (NM_001324320, intron 5 of 29) intron (NM_001324320, intron 5 of 29) 95132 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 241-36 chr10 55002373 55002567 + 2 NA intron (NM_001354404, intron 3 of 34) LOR1-int|LTR|ERV1 -201179 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 297-346 chr4 152231208 152231497 + 2 NA Intergenic Intergenic -106303 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 299-295 chr3 115220583 115220828 + 2 NA Intergenic Intergenic -73417 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 263-106 chr14 53024318 53024483 + 2 NA Intergenic MER34-int|LTR|ERV1 -73303 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 296-349 chr4 135726261 135726437 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 161744 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 333-369 chr3 145562858 145563062 + 2 NA Intergenic L1MA9|LINE|L1 506225 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 250-183 chr19 28514863 28515061 + 2 NA intron (NR_110759, intron 5 of 9) L1MEd|LINE|L1 -91726 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 385-418 chrX 81316835 81317190 + 2 NA Intergenic L1MB7|LINE|L1 114910 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 363-235 chr2 173294971 173295325 + 2 NA Intergenic LTR25-int|LTR|ERV1 -13112 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 511-58 chr13 58132611 58133061 + 2 NA Intergenic L1PA10|LINE|L1 -32991 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 338-395 chr4 129107783 129108073 + 2 NA intron (NM_001099783, intron 3 of 5) intron (NM_001099783, intron 3 of 5) 11776 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 213-76 chr12 114378577 114378726 + 2 NA intron (NM_000192, intron 7 of 8) AluSq|SINE|Alu 27493 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 284-149 chr16 64111509 64111720 + 2 NA Intergenic L1MD3|LINE|L1 1010449 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 194-80 chr18 40658796 40658921 + 2 NA Intergenic L1M5|LINE|L1 592572 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 412-45 chr11 5266624 5266972 + 2 NA Intergenic L1MA4A|LINE|L1 3147 NM_005330 3046 Hs.655195 NM_005330 ENSG00000213931 HBE1 HBE hemoglobin subunit epsilon 1 protein-coding 219-63 chr12 10637647 10637852 + 2 NA intron (NM_018423, intron 1 of 10) intron (NM_018423, intron 1 of 10) -24140 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 761 chr1 18456784 18457354 + 2 NA Intergenic L1MB7|LINE|L1 -23861 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 400-316 chr7 11515965 11516229 + 2 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 316101 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 319-590 chrX 120754713 120754919 + 2 NA Intergenic L2a|LINE|L2 121109 NM_001145718 643311 Hs.729566 NM_001145718 ENSG00000236446 CT47B1 CT47.13|CT47A13 cancer/testis antigen family 47 member B1 protein-coding 283-426 chr7 85062943 85063206 + 2 NA intron (NM_152754, intron 6 of 16) intron (NM_152754, intron 6 of 16) 58857 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 315-34 chr1 217271139 217271447 + 2 NA Intergenic Intergenic -133591 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 375-331 chr5 114768782 114769140 + 2 NA intron (NR_130785, intron 1 of 12) L1MA2|LINE|L1 4452 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 330-497 chr7 95945210 95945482 + 2 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 172840 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 415-246 chr6 161777719 161778058 + 2 NA intron (NM_004562, intron 7 of 11) (AT)n|Simple_repeat|Simple_repeat 306911 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 309-12 chr1 105157318 105157606 + 2 NA Intergenic L1MA8|LINE|L1 461473 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 319-372 chr4 61178980 61179236 + 2 NA Intergenic Intergenic -22122 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 258-7 chr1 65753170 65753354 + 2 NA Intergenic LTR47B3|LTR|ERVL -39248 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 248-193 chr2 97693659 97693869 + 2 NA intron (NR_038386, intron 7 of 9) intron (NR_038386, intron 7 of 9) -19804 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 583-50 chr13 58576540 58576994 + 2 NA Intergenic Intergenic -343650 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 219-132 chr17 60233504 60233664 + 2 NA intron (NM_032582, intron 12 of 33) MIR|SINE|MIR -1939 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 325-148 chr13 55029111 55029339 + 2 NA Intergenic Intergenic -145229 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 239-63 chr11 98980513 98980669 + 2 NA Intergenic Intergenic -40358 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 250-135 chr15 48703966 48704196 + 2 NA Intergenic Intergenic -58293 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 316-584 chr9 78041166 78041451 + 2 NA Intergenic Intergenic -9497 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 309-216 chr18 47857928 47858102 + 2 NA intron (NM_001003652, intron 6 of 10) intron (NM_001003652, intron 6 of 10) 72644 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 357-443 chr8 84798867 84799150 + 2 NA intron (NM_001354322, intron 3 of 6) intron (NM_001354322, intron 3 of 6) 93081 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 718-82 chr6 55391392 55391944 + 2 NA intron (NM_207410, intron 6 of 8) AluJr4|SINE|Alu 64199 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 412-103 chr15 79733063 79733426 + 2 NA Intergenic L1PREC2|LINE|L1 163753 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 478-63 chr12 43058043 43058349 + 2 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -97119 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 304-9 chr1 64322804 64323010 + 2 NA Intergenic (ATTC)n|Simple_repeat|Simple_repeat 119284 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 346-473 chr7 132661989 132662211 + 2 NA intron (NR_046323, intron 3 of 4) LTR40b|LTR|ERVL 13306 NR_046323 286023 Hs.671875 NM_173682 ENSG00000183470 FLJ40288 - uncharacterized FLJ40288 ncRNA 313-172 chr15 95340007 95340296 + 2 NA Intergenic AluSc8|SINE|Alu -13051 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 289-199 chr19 36609364 36609561 + 2 NA intron (NM_001256838, intron 2 of 4) intron (NM_001256838, intron 2 of 4) 4149 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 409-321 chrX 85573915 85574297 + 2 NA Intergenic MER21-int|LTR|ERVL -194441 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 196-69 chr14 45989274 45989386 + 2 NA Intergenic L1MC4|LINE|L1 -74829 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 180-28 chr11 81440798 81440944 + 2 NA Intergenic Intergenic 449965 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 166-55 chr2 143787091 143787195 + 2 NA Intergenic L1ME3Cz|LINE|L1 -149924 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 352-456 chr6 57180664 57180982 + 2 NA intron (NM_004282, intron 1 of 2) L1MEd|LINE|L1 8497 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 118-12 chr11 102660358 102660449 + 2 NA Intergenic Intergenic -35071 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 242-417 chr8 134405739 134405917 + 2 NA Intergenic Intergenic -192243 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 419-68 chr12 48326571 48326873 + 2 NA Intergenic Intergenic -2258 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 342-183 chr16 72177712 72177921 + 2 NA Intergenic L1MC4a|LINE|L1 -5366 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 288-150 chr16 78414988 78415132 + 2 NA intron (NM_001291997, intron 5 of 7) MER41B|LTR|ERV1 315406 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 320-407 chr4 150875949 150876208 + 2 NA intron (NM_001367550, intron 17 of 56) L1PA16|LINE|L1 139189 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 272-137 chr16 6456272 6456463 + 2 NA intron (NM_018723, intron 2 of 15) FRAM|SINE|Alu -317442 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 460-33 chr10 36461787 36462117 + 2 NA Intergenic Intergenic -663905 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 278-200 chr2 30130767 30131030 + 2 NA Intergenic AluSz|SINE|Alu -16109 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 289-243 chr2 137307459 137307696 + 2 NA intron (NM_001316349, intron 12 of 27) (AATGTCA)n|Simple_repeat|Simple_repeat 542032 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 506-67 chr12 47468657 47469030 + 2 NA Intergenic AluSx|SINE|Alu 53835 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 211-230 chr5 39013768 39013952 + 2 NA intron (NM_001285439, intron 3 of 38) (AT)n|Simple_repeat|Simple_repeat 60539 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 516-251 chr8 88837702 88838090 + 2 NA Intergenic Intergenic -510413 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 436-141 chr2 143870319 143870612 + 2 NA Intergenic FAM|SINE|Alu -66602 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 311-399 chr5 26162805 26163040 + 2 NA Intergenic L1MC3|LINE|L1 875664 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 164-81 chr3 180756543 180756636 + 2 NA intron (NR_109986, intron 4 of 13) L1ME4a|LINE|L1 -77100 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 617-112 chr5 133294425 133294899 + 2 NA intron (NM_015082, intron 6 of 15) L2a|LINE|L2 133044 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 254-448 chrX 50952301 50952522 + 2 NA Intergenic L1MD2|LINE|L1 41676 NM_005448 9210 Hs.532692 NM_005448 ENSG00000130385 BMP15 GDF9B|ODG2|POF4 bone morphogenetic protein 15 protein-coding 364-191 chr19 57952928 57953131 + 2 NA Intergenic AluSp|SINE|Alu -5323 NM_005773 10172 Hs.596242 NM_005773 ENSG00000152454 ZNF256 BMZF-3|BMZF3 zinc finger protein 256 protein-coding 331-181 chr16 1215049 1215358 + 2 NA intron (NM_001005407, intron 27 of 33) CpG 10065 NM_012467 25823 Hs.592076 NM_012467 ENSG00000116176 TPSG1 PRSS31|TMT|trpA tryptase gamma 1 protein-coding 226-64 chr12 5690162 5690296 + 2 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 196097 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 220-206 chr20 60400592 60400743 + 2 NA Intergenic L1ME2z|LINE|L1 72309 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 387-30 chr10 7638656 7638917 + 2 NA intron (NM_001001851, intron 4 of 11) Kanga1c|DNA|TcMar-Tc2 -19113 NM_032817 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 375-448 chr9 75330586 75330890 + 2 NA Intergenic L1PA17|LINE|L1 242224 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 349-529 chrX 67087570 67087824 + 2 NA Intergenic L1MA4A|LINE|L1 -448399 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 341-47 chr1 231736779 231737084 + 2 NA intron (NM_001164544, intron 3 of 8) intron (NM_001164544, intron 3 of 8) 81586 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 317-96 chr11 127086779 127087015 + 2 NA intron (NR_120578, intron 1 of 2) L1PB1|LINE|L1 19895 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 407-186 chr3 5274780 5275095 + 2 NA Intergenic Intergenic -24682 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 500-214 chr4 128204348 128204760 + 2 NA intron (NR_146772, intron 16 of 19) AluSq|SINE|Alu 83259 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 253-228 chr20 58523474 58523619 + 2 NA intron (NR_034147, intron 4 of 6) intron (NR_034147, intron 4 of 6) -8147 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 254-256 chr3 141650794 141650962 + 2 NA Intergenic Intergenic -12321 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 183-10 chr10 11311699 11311871 + 2 NA intron (NM_001025076, intron 9 of 13) L1MEd|LINE|L1 32889 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 328-445 chr5 40959111 40959361 + 2 NA intron (NM_000587, intron 11 of 17) MIRc|SINE|MIR 49739 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 162-85 chr3 84614125 84614216 + 2 NA Intergenic Intergenic 255405 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 179-97 chr5 106129180 106129320 + 2 NA Intergenic L1P4|LINE|L1 881764 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 409-12 chr1 189631662 189631908 + 2 NA Intergenic L1MB2|LINE|L1 844225 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 360-166 chr17 53519323 53519641 + 2 NA Intergenic Intergenic -303445 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 553-64 chr14 66323955 66324412 + 2 NA Intergenic L2c|LINE|L2 -162188 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 330-234 chr19 9150856 9151052 + 2 NA intron (NR_102435, intron 1 of 6) MIR|SINE|MIR 10557 NM_020933 57693 Hs.465829 NM_020933 ENSG00000130803 ZNF317 - zinc finger protein 317 protein-coding 306-550 chr9 91546992 91547150 + 2 NA Intergenic Intergenic -89180 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 367-492 chrX 93804639 93804938 + 2 NA Intergenic Intergenic 130582 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 363-439 chr8 74539549 74539792 + 2 NA Intergenic L1PA11|LINE|L1 -8873 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 236-128 chr15 60902088 60902266 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 220608 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 301-44 chr10 78283914 78284152 + 2 NA Intergenic AluSz|SINE|Alu 16691 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 304-531 chr8 114610669 114610879 + 2 NA Intergenic Intergenic 1057239 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 182-75 chr18 33524556 33524691 + 2 NA Intergenic Intergenic -53596 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 231-260 chr4 96947380 96947581 + 2 NA Intergenic L1PB4|LINE|L1 -419446 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 392-5 chr1 110561337 110561604 + 2 NA Intergenic Intergenic -42295 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 454-269 chr6 39452573 39452883 + 2 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -21338 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 360-32 chr10 41807442 41807661 + 2 NA Intergenic ALR/Alpha|Satellite|centr 560494 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 231-359 chr8 125944938 125945109 + 2 NA non-coding (NR_038446, exon 2 of 2) non-coding (NR_038446, exon 2 of 2) 6174 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 315-431 chr6 165265894 165266180 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 43568 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 242-399 chr8 102012587 102012737 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) 28230 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 429-187 chr3 25314284 25314629 + 2 NA intron (NM_001290216, intron 4 of 10) Arthur1|DNA|hAT-Tip100 -26346 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 346-457 chr7 22913344 22913586 + 2 NA Intergenic LTR7|LTR|ERV1 56852 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 570-167 chr5 158118207 158118644 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -259280 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 309-444 chr5 82039236 82039485 + 2 NA intron (NM_031482, intron 2 of 7) intron (NM_031482, intron 2 of 7) 67337 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 321-138 chr12 88837681 88837884 + 2 NA Intergenic L1M4|LINE|L1 181910 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 501-107 chr2 78552415 78552841 + 2 NA non-coding (NR_136311, exon 2 of 3) non-coding (NR_136311, exon 2 of 3) 7097 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 351-429 chr6 163224005 163224329 + 2 NA intron (NM_001080379, intron 4 of 4) AluSx1|SINE|Alu -32165 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 529-88 chr17 70998549 70998989 + 2 NA Intergenic Intergenic 203410 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 396-380 chrX 58089392 58089744 + 2 NA Intergenic HSAT4|Satellite|centr -178935 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 318-407 chr4 82761324 82761521 + 2 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) -7992 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 225-199 chr3 37784376 37784576 + 2 NA intron (NM_002207, intron 25 of 27) intron (NM_002207, intron 25 of 27) 77304 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 344-34 chr1 211862308 211862509 + 2 NA Intergenic L1MC1|LINE|L1 31447 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 248-174 chr2 18808796 18808965 + 2 NA Intergenic L1MEc|LINE|L1 218091 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 160-85 chr5 18932471 18932606 + 2 NA Intergenic L1MB7|LINE|L1 953734 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 364-16 chr1 88018724 88019018 + 2 NA Intergenic Intergenic -647216 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 337-387 chr4 37082842 37083137 + 2 NA Intergenic L1MB7|LINE|L1 81210 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 283-41 chr1 232409019 232409259 + 2 NA intron (NM_020808, intron 17 of 20) intron (NM_020808, intron 17 of 20) 106469 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 490-81 chr13 98482346 98482621 + 2 NA intron (NM_001032296, intron 2 of 10) intron (NM_001032296, intron 2 of 10) 39642 NM_003576 8428 Hs.508514 NM_003576 ENSG00000102572 STK24 HEL-S-95|MST3|MST3B|STE20|STK3 serine/threonine kinase 24 protein-coding 200-287 chr9 35682766 35682946 + 2 NA TTS (NM_001301227) TTS (NM_001301227) 7069 NM_001301226 7169 Hs.300772 NM_003289 ENSG00000198467 TPM2 AMCD1|DA1|DA2B|DA2B4|HEL-S-273|NEM4|TMSB tropomyosin 2 protein-coding 204-57 chr12 51671585 51671780 + 2 NA intron (NM_001369788, intron 2 of 25) L4_C_Mam|LINE|RTE-X 80446 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 264-320 chr5 42288995 42289177 + 2 NA Intergenic Intergenic -113741 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 176-40 chr16 82573433 82573543 + 2 NA Intergenic L1MC3|LINE|L1 -53481 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 388-204 chr21 34765434 34765665 + 2 NA intron (NR_038885, intron 1 of 2) intron (NR_038885, intron 1 of 2) 19724 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 566-109 chr20 42252475 42252871 + 2 NA intron (NM_007050, intron 13 of 30) intron (NM_007050, intron 13 of 30) -432810 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 258-88 chr12 43902265 43902455 + 2 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 66279 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 311-477 chr7 84107049 84107352 + 2 NA intron (NM_006080, intron 4 of 16) intron (NM_006080, intron 4 of 16) 87589 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 705-74 chr4 54506052 54506599 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 100806 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 324-25 chr1 162041915 162042121 + 2 NA Intergenic MER21C|LTR|ERVL -17553 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 293-469 chr9 30371716 30372000 + 2 NA Intergenic L1M4c|LINE|L1 36596 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 213-221 chr5 15365532 15365662 + 2 NA Intergenic Intergenic -99037 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 232-6 chr1 50259639 50259770 + 2 NA Intergenic Intergenic 149871 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 381-420 chrX 118038382 118038700 + 2 NA intron (NM_001168301, intron 1 of 7) L1MA3|LINE|L1 -53128 NM_001168299 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 280-29 chr1 193946282 193946536 + 2 NA Intergenic Intergenic 641664 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 631-27 chr11 91530345 91530743 + 2 NA Intergenic Intergenic -661342 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 444-111 chr19 27686820 27687192 + 2 NA Intergenic ALR/Alpha|Satellite|centr -106425 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 375-53 chr10 81269056 81269305 + 2 NA Intergenic LTR12F|LTR|ERV1 -606014 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 314-472 chr5 105084945 105085255 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -14374 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 257-250 chr21 35144578 35144741 + 2 NA Intergenic Intergenic -95361 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 283-99 chr12 43085249 43085480 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -69951 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 216-175 chr2 117862001 117862155 + 2 NA Intergenic Intergenic 28347 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 250-29 chr1 218603049 218603225 + 2 NA intron (NR_031644, intron 3 of 6) MLT1C|LTR|ERVL-MaLR 93042 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 353-358 chr4 30425661 30425899 + 2 NA Intergenic Intergenic -294589 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 625-99 chr7 22350387 22350883 + 2 NA intron (NM_012294, intron 1 of 25) MIRb|SINE|MIR 6519 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 288-336 chr5 107173183 107173461 + 2 NA Intergenic Intergenic -162308 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 250-42 chr10 58979262 58979494 + 2 NA Intergenic 7SLRNA|srpRNA|srpRNA -20140 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 632-59 chr2 149694624 149695078 + 2 NA intron (NR_110240, intron 1 of 2) MLT1J2|LTR|ERVL-MaLR -107076 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 175-99 chr3 12743523 12743634 + 2 NA intron (NM_001284408, intron 2 of 9) L1ME4a|LINE|L1 15681 NM_001284407 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 360-455 chr8 73920660 73920890 + 2 NA Intergenic MER65-int|LTR|ERV1 41793 NR_147034 101926947 Hs.521636 NR_147034 LINC01617 C8orf23|NCRNA00249|XLOC_006844 long intergenic non-protein coding RNA 1617 ncRNA 319-45 chr10 11216248 11216464 + 2 NA intron (NM_001326339, intron 2 of 11) intron (NM_001326339, intron 2 of 11) 51326 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 259-390 chr8 78788863 78789097 + 2 NA intron (NM_001199886, intron 2 of 4) L1MC|LINE|L1 16483 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 313-488 chr7 20486288 20486537 + 2 NA Intergenic L1M2|LINE|L1 -129255 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 368-240 chr2 125892002 125892321 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 225824 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 376-401 chr8 71275045 71275351 + 2 NA intron (NM_001370336, intron 10 of 17) L2b|LINE|L2 81508 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 278-260 chr22 34291626 34291788 + 2 NA Intergenic Intergenic -368819 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 327-170 chr15 60144241 60144461 + 2 NA Intergenic L1MEg|LINE|L1 140040 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 221-105 chr16 82196117 82196318 + 2 NA Intergenic Merlin1_HS|DNA|Merlin -25993 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 210-104 chr18 9864286 9864414 + 2 NA Intergenic L1M5|LINE|L1 -21623 NM_001098529 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 273-467 chr8 142866687 142866941 + 2 NA Intergenic L1MC4a|LINE|L1 13006 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 321-495 chr6 60673617 60673798 + 2 NA Intergenic L1ME1|LINE|L1 -900423 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 406-115 chr18 6190367 6190604 + 2 NA intron (NM_001365769, intron 12 of 16) intron (NM_001365769, intron 12 of 16) -66259 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 125-68 chr8 81984345 81984438 + 2 NA Intergenic L3|LINE|CR1 -142105 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 338-370 chr4 30538239 30538421 + 2 NA Intergenic Intergenic -182039 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 210-86 chr15 46705551 46705670 + 2 NA Intergenic Intergenic -478479 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 315-81 chr11 35998036 35998206 + 2 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) -11977 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 349-522 chr9 119389914 119390219 + 2 NA Intergenic L1ME1|LINE|L1 -20631 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 363-480 chr9 122023237 122023558 + 2 NA intron (NM_194252, intron 3 of 3) L1ME1|LINE|L1 70209 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 209-198 chr3 68124724 68124862 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 120546 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 431-296 chr8 109782443 109782761 + 2 NA Intergenic Intergenic -90811 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 333-277 chr2 163954326 163954558 + 2 NA Intergenic Intergenic -218434 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 325-201 chr16 63837449 63837641 + 2 NA Intergenic L1PA15|LINE|L1 1284518 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 273-322 chr4 54160230 54160393 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 60148 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 644-63 chr3 108814889 108815463 + 2 NA Intergenic Intergenic -7610 NM_001317747 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 481-107 chr16 17309006 17309354 + 2 NA intron (NM_022166, intron 2 of 11) MER20|DNA|hAT-Charlie 161780 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 223-40 chr10 81178444 81178661 + 2 NA Intergenic L1MEg|LINE|L1 528755 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 367-369 chr5 129451290 129451495 + 2 NA Intergenic L2|LINE|L2 -8906 NM_133638 171019 Hs.23751 NM_133638 ENSG00000145808 ADAMTS19 - ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding 421-150 chr2 147526182 147526467 + 2 NA Intergenic Intergenic -318193 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 499-114 chr2 40755697 40756123 + 2 NA Intergenic Intergenic -243475 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 250-358 chr5 122546122 122546306 + 2 NA Intergenic Intergenic 38386 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 274-167 chr17 68908369 68908517 + 2 NA intron (NM_001288985, intron 17 of 39) L2a|LINE|L2 46949 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 292-450 chr8 136444283 136444468 + 2 NA Intergenic MLT2C1|LTR|ERVL -86423 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 548-73 chr14 61926026 61926390 + 2 NA intron (NM_001367661, intron 2 of 8) L3|LINE|CR1 -1487 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 335-481 chr6 167645656 167645951 + 2 NA Intergenic Intergenic 33420 NR_117091 401286 Hs.487182 NR_117091 ENSG00000272549 LINC02538 - long intergenic non-protein coding RNA 2538 ncRNA 312-87 chr11 84333695 84333979 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -16498 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 348-165 chr16 7570693 7570963 + 2 NA intron (NM_145893, intron 2 of 13) L1PA10|LINE|L1 237983 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 371-271 chr4 52306784 52307077 + 2 NA Intergenic L1PB4|LINE|L1 255626 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 186-175 chr9 86668802 86668901 + 2 NA Intergenic Intergenic 278655 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 508-81 chr17 73789463 73789795 + 2 NA intron (NR_040020, intron 1 of 6) intron (NR_040020, intron 1 of 6) 2807 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 140-10 chr10 117889789 117889899 + 2 NA Intergenic Intergenic -156977 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 608-140 chr7 17480628 17481165 + 2 NA intron (NR_110013, intron 2 of 3) intron (NR_110013, intron 2 of 3) 78013 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 409-149 chr2 117752581 117752895 + 2 NA Intergenic Intergenic -61953 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 436-318 chr8 133164904 133165137 + 2 NA Intergenic L2a|LINE|L2 -26019 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 217-334 chr6 156180910 156181067 + 2 NA Intergenic L1MA9|LINE|L1 -197762 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 331-77 chr11 6632775 6632970 + 2 NA exon (NM_003737, exon 6 of 21) exon (NM_003737, exon 6 of 21) -13450 NM_000391 1200 Hs.523454 NM_000391 ENSG00000166340 TPP1 CLN2|GIG1|LPIC|SCAR7|TPP-1 tripeptidyl peptidase 1 protein-coding 218-245 chr4 80570068 80570199 + 2 NA intron (NM_152770, intron 2 of 5) L1ME3B|LINE|L1 234413 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 344-288 chr21 29112383 29112685 + 2 NA intron (NM_001286622, intron 6 of 8) L1MEj|LINE|L1 -9456 NM_001371376 282-26 chr1 222219728 222219905 + 2 NA Intergenic Intergenic -241296 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 384-350 chr7 86257264 86257587 + 2 NA Intergenic L1MA8|LINE|L1 -386484 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 288-285 chr4 5610908 5611116 + 2 NA intron (NM_147127, intron 16 of 21) intron (NM_147127, intron 16 of 21) 85856 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 456-270 chr5 178903060 178903425 + 2 NA intron (NM_030613, intron 1 of 4) intron (NM_030613, intron 1 of 4) 7329 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 345-360 chr3 112593121 112593370 + 2 NA Intergenic L1M4c|LINE|L1 8724 NR_109779 100506621 Hs.86538 NR_109779 LINC01279 - long intergenic non-protein coding RNA 1279 ncRNA 220-164 chr2 66812761 66812912 + 2 NA Intergenic L1M5|LINE|L1 -91600 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 419-66 chr12 37974361 37974584 + 2 NA Intergenic ALR/Alpha|Satellite|centr -342302 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 503-83 chr13 31548539 31549040 + 2 NA Intergenic L1MC2|LINE|L1 -190737 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 295-273 chr21 35239327 35239575 + 2 NA Intergenic Intergenic -190153 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 444-284 chr9 105936676 105937052 + 2 NA Intergenic MIR|SINE|MIR 242323 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 354-131 chr14 45716608 45716842 + 2 NA Intergenic Intergenic -1123 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 294-444 chr7 108715713 108715984 + 2 NA Intergenic Intergenic 145974 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 431-259 chr6 149310747 149311064 + 2 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) -6807 NM_001292034 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 388-173 chr2 185874818 185875188 + 2 NA Intergenic Tigger9a|DNA|TcMar-Tigger -74852 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 290-483 chr9 71293840 71294024 + 2 NA intron (NM_001366143, intron 1 of 25) L1ME3D|LINE|L1 153039 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 432-247 chr6 68931040 68931308 + 2 NA intron (NM_001704, intron 4 of 31) intron (NM_001704, intron 4 of 31) 295892 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 324-112 chr12 18257290 18257461 + 2 NA Intergenic LTR67B|LTR|ERVL -4165 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 303-276 chr3 7434673 7434834 + 2 NA intron (NM_000844, intron 5 of 9) L1MD|LINE|L1 100531 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 516-65 chr13 95671445 95671826 + 2 NA Intergenic L1M1|LINE|L1 5290 NR_132117 100289274 Hs.594844 NR_132117 ENSG00000247400 DNAJC3-DT DNAJC3-AS1 DNAJC3 divergent transcript ncRNA 212-161 chr2 107341995 107342149 + 2 NA intron (NR_049853, intron 1 of 3) MIRb|SINE|MIR 7453 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 386-57 chr11 82137743 82138081 + 2 NA intron (NR_120571, intron 3 of 7) AluJr|SINE|Alu -247076 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 275-161 chr18 42224293 42224484 + 2 NA intron (NR_046174, intron 2 of 9) L1M4a1|LINE|L1 37720 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 399-301 chr8 25637425 25637705 + 2 NA Intergenic L1MEd|LINE|L1 178332 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 658-6 chr1 181173585 181174118 + 2 NA promoter-TSS (NR_125966) promoter-TSS (NR_125966) -633 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 525-200 chr5 93595640 93595992 + 2 NA Intergenic Intergenic 12594 NM_005654 7025 Hs.519445 NM_005654 ENSG00000175745 NR2F1 BBOAS|BBSOAS|COUP-TFI|COUPTF1|EAR-3|EAR3|ERBAL3|SVP44|TCFCOUP1|TFCOUP1 nuclear receptor subfamily 2 group F member 1 protein-coding 263-436 chr8 135998793 135998972 + 2 NA Intergenic L1MCa|LINE|L1 -531916 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 371-184 chr2 123714788 123715062 + 2 NA Intergenic L1MEc|LINE|L1 310249 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 322-277 chr2 177050904 177051104 + 2 NA Intergenic L2b|LINE|L2 161407 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 607-50 chr16 26018202 26018568 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -6852 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 404-336 chr9 12367710 12368057 + 2 NA Intergenic Intergenic -325502 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 400-189 chr20 11024884 11025184 + 2 NA Intergenic L1MB7|LINE|L1 -1510 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 288-453 chr8 129019470 129019672 + 2 NA Intergenic LTR16|LTR|ERVL -53570 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 548-124 chr2 160187852 160188318 + 2 NA intron (NM_001282390, intron 3 of 13) MIRb|SINE|MIR 12187 NM_001282389 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 260-236 chr20 1532594 1532829 + 2 NA Intergenic MIR|SINE|MIR 24994 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 129-16 chr13 35280310 35280401 + 2 NA intron (NM_015678, intron 34 of 57) intron (NM_015678, intron 34 of 57) 196334 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 513-214 chr4 161046103 161046523 + 2 NA Intergenic Intergenic -976420 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 320-608 chrX 77318617 77318873 + 2 NA Intergenic L1PA8|LINE|L1 -128644 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 359-243 chr2 122790494 122790837 + 2 NA Intergenic Intergenic 282816 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 213-138 chr2 59005683 59005841 + 2 NA intron (NR_033873, intron 7 of 13) intron (NR_033873, intron 7 of 13) -211946 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 377-129 chr14 84904773 84904992 + 2 NA Intergenic LTR33B|LTR|ERVL -367050 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 366-177 chr18 63854095 63854409 + 2 NA Intergenic L1MA3|LINE|L1 -33453 NM_001143818 5055 Hs.594481 NM_002575 ENSG00000197632 SERPINB2 HsT1201|PAI|PAI-2|PAI2|PLANH2 serpin family B member 2 protein-coding 715-25 chr17 74048898 74049335 + 2 NA Intergenic MIRb|SINE|MIR -154562 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 248-110 chr14 45467976 45468153 + 2 NA Intergenic Intergenic -214862 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 234-353 chr7 11936685 11936856 + 2 NA Intergenic L1MA4A|LINE|L1 -104572 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 250-390 chr7 14507980 14508195 + 2 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 333363 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 372-261 chr2 145357488 145357756 + 2 NA Intergenic L2|LINE|L2 689655 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 489-162 chr20 24403767 24404027 + 2 NA Intergenic L1MB7|LINE|L1 -65302 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 386-310 chr6 50265286 50265578 + 2 NA Intergenic Intergenic -215503 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 305-543 chr8 106186148 106186413 + 2 NA Intergenic MIRb|SINE|MIR -83898 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 306-263 chr2 209864902 209865166 + 2 NA intron (NM_032504, intron 22 of 63) L1PA8A|LINE|L1 93041 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 368-291 chr3 55325191 55325390 + 2 NA Intergenic Intergenic 147118 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 275-314 chr6 88575368 88575520 + 2 NA Intergenic L3|LINE|CR1 -36075 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 212-63 chr11 38566648 38566799 + 2 NA Intergenic L1M5|LINE|L1 79633 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 373-144 chr16 50400777 50400994 + 2 NA Intergenic Intergenic -5752 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 178-81 chr21 29696037 29696183 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -52065 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 223-251 chr4 92596776 92596938 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 292458 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 286-257 chr21 18434237 18434425 + 2 NA Intergenic L1MCa|LINE|L1 -30546 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 521-274 chrX 151616600 151616982 + 2 NA intron (NM_173493, intron 4 of 15) intron (NM_173493, intron 4 of 15) 53116 NM_173493 139135 Hs.160594 NM_173493 ENSG00000166049 PASD1 CT63|CT64|OXTES1 PAS domain containing repressor 1 protein-coding 115-24 chr20 22314571 22314658 + 2 NA Intergenic MIRb|SINE|MIR -31813 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 195-22 chr10 52975726 52975890 + 2 NA Intergenic Intergenic -204108 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 367-222 chr2 142001281 142001611 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 130255 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 556-155 chr4 52258823 52259336 + 2 NA Intergenic Intergenic 207775 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 593-79 chr2 123466437 123466989 + 2 NA Intergenic L1MEg|LINE|L1 -393232 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 453-285 chr8 103245012 103245423 + 2 NA non-coding (NR_148213, exon 4 of 4) non-coding (NR_148213, exon 4 of 4) -53277 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 267-17 chr1 104912844 104913086 + 2 NA Intergenic L1ME4a|LINE|L1 705970 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 459-15 chr1 164294574 164294903 + 2 NA Intergenic Intergenic -264622 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 489-23 chr10 29169527 29169876 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -119369 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 485-315 chr9 101934493 101934892 + 2 NA Intergenic Intergenic -196112 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 228-233 chr4 15399521 15399710 + 2 NA intron (NM_001135171, intron 1 of 2) MIRb|SINE|MIR 25064 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 320-523 chr7 140202484 140202746 + 2 NA Intergenic MIR|SINE|MIR 25354 NR_024451 100134229 Hs.634333 NR_024451 ENSG00000260231 KDM7A-DT JHDM1D-AS1 KDM7A divergent transcript ncRNA 260 chr1 8179778 8179993 + 2 NA Intergenic L1M5|LINE|L1 -28787 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 330-320 chr20 43079373 43079622 + 2 NA intron (NM_133170, intron 1 of 31) L1MEi|LINE|L1 110409 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 186-117 chr4 44068211 44068345 + 2 NA Intergenic LTR47A|LTR|ERVL 51216 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 439-250 chr6 144086531 144086880 + 2 NA Intergenic L1MB4|LINE|L1 8868 NM_031287 83443 Hs.110695 NM_031287 ENSG00000169976 SF3B5 SF3b10|Ysf3 splicing factor 3b subunit 5 protein-coding 354-394 chr6 10363193 10363406 + 2 NA Intergenic Intergenic -41203 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 571-114 chr3 118147045 118147538 + 2 NA Intergenic L1M4b|LINE|L1 -456366 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 209-81 chr13 69897130 69897298 + 2 NA intron (NM_001286725, intron 3 of 9) MER76-int|LTR|ERVL -209999 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 168-3 chr1 104913465 104913592 + 2 NA Intergenic Intergenic 705407 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 344-388 chr5 77006927 77007243 + 2 NA Intergenic Intergenic -23319 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 483-84 chr16 68619863 68620233 + 2 NA Intergenic L2|LINE|L2 -25262 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 121-35 chr22 25962993 25963065 + 2 NA intron (NM_001318245, intron 39 of 43) intron (NM_001318245, intron 39 of 43) -206433 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 602-95 chr4 64884513 64884982 + 2 NA Intergenic Intergenic 119753 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 338-20 chr1 101666112 101666408 + 2 NA Intergenic Intergenic 180820 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 144-28 chr14 74126145 74126253 + 2 NA intron (NM_001024674, intron 5 of 5) L1MB5|LINE|L1 41246 NM_001024674 91750 Hs.612866 NM_001024674 ENSG00000205659 LIN52 C14orf46|c14_5549 lin-52 DREAM MuvB core complex component protein-coding 197-111 chr2 176421605 176421708 + 2 NA Intergenic Intergenic 152214 NM_001319098 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 228-181 chr2 175644253 175644424 + 2 NA Intergenic L1MC1|LINE|L1 357929 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 339-564 chr8 62399364 62399632 + 2 NA intron (NM_001304533, intron 1 of 6) AluSx1|SINE|Alu 150644 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 609-33 chr14 68201548 68202062 + 2 NA intron (NM_133509, intron 7 of 10) L2c|LINE|L2 378213 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 299-82 chr11 87378534 87378715 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger 340690 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 317-256 chr2 160559380 160559571 + 2 NA Intergenic AluJr|SINE|Alu -65668 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 286-97 chr12 96959979 96960252 + 2 NA Intergenic Intergenic 52649 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 432-243 chr6 45158924 45159318 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 38649 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 385-256 chr3 178235574 178235820 + 2 NA Intergenic Intergenic -183504 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 945-13 chr21 27193671 27194511 + 2 NA Intergenic AluSx|SINE|Alu -227003 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 304-392 chr4 119563296 119563593 + 2 NA intron (NM_033437, intron 5 of 20) intron (NM_033437, intron 5 of 20) 64293 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 277-188 chr2 50856403 50856588 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -160233 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 329-370 chr3 89553841 89554126 + 2 NA Intergenic Intergenic 446362 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 590-112 chr3 139793899 139794308 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -116053 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 716 chr1 44411171 44411703 + 2 NA intron (NM_018150, intron 1 of 14) intron (NM_018150, intron 1 of 14) 6182 NM_018150 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 558-95 chr2 34678592 34678941 + 2 NA intron (NR_126404, intron 1 of 2) intron (NR_126404, intron 1 of 2) 1209 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 197-230 chr9 105681298 105681438 + 2 NA Intergenic Intergenic -13173 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 269-175 chr19 56356813 56356966 + 2 NA intron (NM_001322072, intron 2 of 6) L1MEf|LINE|L1 -11210 NR_003127 147947 Hs.467326 NM_194319 ENSG00000240225 ZNF542P ZNF542 zinc finger protein 542, pseudogene pseudo 335-215 chr18 70865960 70866205 + 2 NA Intergenic Intergenic -215128 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 300-280 chr3 96101352 96101523 + 2 NA Intergenic L1PA17|LINE|L1 -258527 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 482-32 chr10 61420548 61420869 + 2 NA intron (NR_134508, intron 4 of 6) L1ME1|LINE|L1 -31931 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 478-244 chr5 153203899 153204341 + 2 NA Intergenic Intergenic -231771 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 304-461 chr6 65264843 65265066 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -36464 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 248-293 chr4 155598924 155599125 + 2 NA Intergenic AluSx|SINE|Alu -67686 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 546-202 chr6 847738 848158 + 2 NA Intergenic Intergenic -20550 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 228-92 chr14 37553239 37553396 + 2 NA TTS (NM_001195296) TTS (NM_001195296) 41932 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 285-209 chr2 142765306 142765458 + 2 NA Intergenic L1MA4A|LINE|L1 -112282 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 410-292 chr7 145419619 145419846 + 2 NA Intergenic Intergenic -583679 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 348-92 chr11 97247345 97247542 + 2 NA Intergenic L1PB4|LINE|L1 739018 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 358-312 chr3 148476718 148476905 + 2 NA Intergenic Intergenic 195920 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 202-104 chr19 28891382 28891485 + 2 NA Intergenic Intergenic -73698 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 303-391 chr6 39539856 39540150 + 2 NA exon (NM_145027, exon 13 of 23) exon (NM_145027, exon 13 of 23) -108613 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 271-337 chr5 27420490 27420664 + 2 NA Intergenic L1MA3|LINE|L1 -51715 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 506-162 chr2 207640538 207640955 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -14693 NM_001330133 151194 Hs.664764 NM_145280 ENSG00000144401 METTL21A FAM119A|HCA557b|HSPA-KMT methyltransferase like 21A protein-coding 177-81 chr2 167588645 167588782 + 2 NA Intergenic L1M5|LINE|L1 -229959 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 337-481 chr6 40306262 40306458 + 2 NA Intergenic L1ME3G|LINE|L1 49646 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 802-75 chrX 89108628 89109295 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 361736 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 269-225 chr20 52208470 52208708 + 2 NA Intergenic HAL1|LINE|L1 -16604 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 304-361 chr3 173808017 173808264 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 112656 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 299-99 chr12 33513745 33513964 + 2 NA Intergenic L1PA14|LINE|L1 -74035 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 487-236 chr5 100123680 100124108 + 2 NA Intergenic Intergenic 264360 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 432-240 chr6 25134652 25134980 + 2 NA intron (NR_027626, intron 2 of 6) MER4-int|LTR|ERV1 3007 NR_002174 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 283-12 chr1 82764133 82764358 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -138938 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 339-299 chr2 211787545 211787866 + 2 NA intron (NM_001042599, intron 4 of 26) intron (NM_001042599, intron 4 of 26) 638655 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 277-43 chr10 20126805 20127067 + 2 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 310504 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 320-321 chr21 20541504 20541749 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 261482 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 518-97 chr15 91958845 91959187 + 2 NA intron (NR_135775, intron 2 of 10) L1PB2|LINE|L1 104712 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 557-8 chr1 88396832 88397263 + 2 NA Intergenic (ATATGT)n|Simple_repeat|Simple_repeat -287097 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 659-118 chr8 101186429 101186950 + 2 NA Intergenic Intergenic 18984 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 676-76 chr3 7979319 7979686 + 2 NA intron (NR_110131, intron 2 of 3) L2b|LINE|L2 36805 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 378-300 chr4 35208036 35208369 + 2 NA Intergenic ERVL-int|LTR|ERVL -938455 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 368-398 chr6 83407348 83407601 + 2 NA intron (NM_002395, intron 2 of 13) intron (NM_002395, intron 2 of 13) 23577 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 513-29 chr10 60963294 60963759 + 2 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) -18800 NM_001350905 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 308-296 chr3 72733423 72733724 + 2 NA Intergenic MIRb|SINE|MIR -69324 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 594-3 chr1 50659962 50660332 + 2 NA intron (NM_007051, intron 7 of 18) intron (NM_007051, intron 7 of 18) -236704 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 183-176 chrX 85948018 85948193 + 2 NA intron (NM_001320959, intron 8 of 14) intron (NM_001320959, intron 8 of 14) -44398 NR_029848 494323 NR_029848 ENSG00000199051 MIR361 MIRN361|hsa-mir-361|mir-361 microRNA 361 ncRNA 501-3 chr1 66478382 66478876 + 2 NA Intergenic L1PA15|LINE|L1 -54964 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 224-61 chr12 22409681 22409854 + 2 NA Intergenic Intergenic -75053 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 332-269 chr2 137713393 137713684 + 2 NA Intergenic Intergenic 214394 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 213-263 chr7 31670134 31670301 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger -16800 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 459-83 chr14 65314804 65315142 + 2 NA Intergenic Intergenic 20210 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 322-400 chr4 179818716 179818902 + 2 NA Intergenic L1PA7|LINE|L1 1340340 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 217-49 chr10 85811910 85812073 + 2 NA intron (NM_017551, intron 8 of 15) L1M2c|LINE|L1 234260 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 286-55 chr10 120910543 120910738 + 2 NA Intergenic Intergenic 59278 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 421-261 chr6 94045354 94045735 + 2 NA Intergenic Intergenic 327241 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 322-578 chrX 50610735 50611051 + 2 NA intron (NR_027121, intron 5 of 9) intron (NR_027121, intron 5 of 9) -140068 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 234-125 chr16 78527697 78527864 + 2 NA intron (NM_001291997, intron 7 of 7) MER20|DNA|hAT-Charlie 428126 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 227-320 chr6 120106448 120106593 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 91341 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 417-150 chr2 123843704 123844074 + 2 NA Intergenic L1PA16|LINE|L1 181285 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 204-280 chr8 35184163 35184304 + 2 NA Intergenic Intergenic -51242 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 271-42 chr10 36531450 36531612 + 2 NA Intergenic Intergenic -594326 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 220-361 chr8 50030883 50031042 + 2 NA intron (NR_135798, intron 1 of 15) L1MA3|LINE|L1 119555 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 177-124 chr4 186444123 186444269 + 2 NA intron (NR_033901, intron 1 of 6) intron (NR_033901, intron 1 of 6) 56862 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 253-131 chr14 57662626 57662833 + 2 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -168872 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 405-250 chr5 76273010 76273278 + 2 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) -130141 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 219-3 chr1 33714121 33714256 + 2 NA intron (NM_052896, intron 21 of 69) intron (NM_052896, intron 21 of 69) -146287 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 485-249 chr6 102321901 102322286 + 2 NA Intergenic L1ME1|LINE|L1 923108 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 533-173 chr5 27468145 27468539 + 2 NA Intergenic Intergenic -3950 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 309-73 chr11 21167309 21167531 + 2 NA intron (NM_201551, intron 13 of 18) MLT1K|LTR|ERVL-MaLR 497834 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 383-223 chr20 39553772 39553995 + 2 NA Intergenic Intergenic -329135 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 276-213 chr2 7374338 7374601 + 2 NA Intergenic Intergenic -46792 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 612-64 chr2 82506397 82506859 + 2 NA Intergenic Intergenic -350175 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 265-308 chr5 72593721 72593974 + 2 NA intron (NR_105007, intron 1 of 2) (AAAT)n|Simple_repeat|Simple_repeat 36770 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 292-349 chr5 53966009 53966202 + 2 NA intron (NM_019087, intron 4 of 4) MER21B|LTR|ERVL -14506 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 321-204 chr16 6239050 6239282 + 2 NA intron (NM_018723, intron 1 of 15) (AATG)n|Simple_repeat|Simple_repeat 219463 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 329-249 chr19 37157515 37157829 + 2 NA intron (NM_001288800, intron 2 of 4) intron (NM_001288800, intron 2 of 4) 14764 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 346-31 chr1 187572918 187573248 + 2 NA Intergenic L1MEg|LINE|L1 129455 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 227-379 chr8 126977949 126978127 + 2 NA Intergenic Intergenic -35116 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 339-607 chr9 37713077 37713276 + 2 NA intron (NM_001371225, intron 5 of 15) intron (NM_001371225, intron 5 of 15) -40627 NM_001286952 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 363-263 chr20 53502448 53502674 + 2 NA Intergenic Intergenic -50209 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 264-212 chr2 129661738 129661902 + 2 NA Intergenic L1MC3|LINE|L1 215671 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 367-25 chr1 165546489 165546709 + 2 NA intron (NM_001005214, intron 1 of 1) intron (NM_001005214, intron 1 of 1) 2358 NM_001005214 440699 Hs.664975 NM_001005214 ENSG00000162763 LRRC52 - leucine rich repeat containing 52 protein-coding 263-207 chr2 104899398 104899623 + 2 NA Intergenic Intergenic -26915 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 384-400 chr9 90509950 90510304 + 2 NA intron (NR_034157, intron 1 of 5) LTR78|LTR|ERV1 72619 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 289-335 chr4 54241871 54242031 + 2 NA intron (NM_001347828, intron 2 of 23) HERV35I-int|LTR|ERV1 7991 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 232-123 chr16 60998114 60998291 + 2 NA Intergenic L1MC|LINE|L1 57564 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 296-70 chr11 9942905 9943162 + 2 NA intron (NM_030962, intron 16 of 39) intron (NM_030962, intron 16 of 39) 103891 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 700-20 chr11 82491567 82492199 + 2 NA Intergenic L1PB2|LINE|L1 -87970 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 398-372 chr8 138247369 138247724 + 2 NA intron (NM_015912, intron 6 of 19) THE1C|LTR|ERVL-MaLR -164001 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 338-276 chr2 139848433 139848688 + 2 NA Intergenic Intergenic 738125 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 232-189 chr2 154523913 154524053 + 2 NA Intergenic L1MA2|LINE|L1 -66545 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 424-221 chr5 63560165 63560556 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 401932 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 190-33 chr12 13741921 13742074 + 2 NA intron (NM_000834, intron 3 of 12) Tigger15a|DNA|TcMar-Tigger 238359 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 332-420 chr5 76512454 76512729 + 2 NA intron (NM_006633, intron 2 of 35) intron (NM_006633, intron 2 of 35) -34818 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 301-190 chr2 4327298 4327588 + 2 NA Intergenic Intergenic 328779 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 568-35 chr12 24383318 24383672 + 2 NA intron (NM_152989, intron 2 of 17) Tigger7|DNA|TcMar-Tigger 160224 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 347-219 chr2 64422242 64422483 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -31800 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 229-40 chr10 84622256 84622431 + 2 NA Intergenic LTR37B|LTR|ERV1 197174 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 457-52 chr12 126918515 126918825 + 2 NA intron (NR_104646, intron 6 of 6) L1MB5|LINE|L1 -43980 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 408-236 chr4 63411539 63411886 + 2 NA Intergenic L1P1|LINE|L1 997738 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 549-68 chr15 96027841 96028253 + 2 NA Intergenic L1ME2|LINE|L1 99794 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 380-210 chr2 225887260 225887607 + 2 NA Intergenic L1MA4|LINE|L1 -255361 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 343-61 chr10 107586689 107587019 + 2 NA Intergenic Intergenic -422148 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 513-269 chr8 5047381 5047725 + 2 NA Intergenic Intergenic -52639 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 240-153 chr15 57803529 57803692 + 2 NA Intergenic Intergenic 96896 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 378-149 chr15 76467725 76468062 + 2 NA intron (NR_148227, intron 25 of 32) intron (NR_148227, intron 25 of 32) -118754 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 394-135 chr17 63378142 63378457 + 2 NA intron (NM_025185, intron 13 of 25) (AATATA)n|Simple_repeat|Simple_repeat 61968 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 377-213 chr2 119076774 119076987 + 2 NA Intergenic MER117|DNA|hAT-Charlie 81871 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 524-228 chr7 20565683 20566119 + 2 NA Intergenic L1MB2|LINE|L1 -49766 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 255-436 chr8 125788646 125788854 + 2 NA Intergenic Intergenic 162447 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 621-96 chr5 87464117 87464662 + 2 NA Intergenic L1MA4A|LINE|L1 -51356 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 273-90 chr11 115494632 115494796 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 9701 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 383-305 chr5 25254218 25254437 + 2 NA intron (NR_136209, intron 1 of 3) MER20|DNA|hAT-Charlie 63374 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 350-310 chr3 62318120 62318452 + 2 NA promoter-TSS (NM_001291942) promoter-TSS (NM_001291942) 661 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 250-263 chr22 42712496 42712706 + 2 NA intron (NM_001318038, intron 1 of 2) intron (NM_001318038, intron 1 of 2) 8269 NR_146459 53947 Hs.105956 NM_017436 ENSG00000128274 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase (P blood group) protein-coding 439-180 chr3 56438380 56438707 + 2 NA intron (NR_132749, intron 1 of 17) L1ME4a|LINE|L1 29924 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 446-72 chr12 19490808 19491231 + 2 NA intron (NM_001114176, intron 3 of 8) Charlie5|DNA|hAT-Charlie 50420 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 346-536 chr9 132699740 132699928 + 2 NA Intergenic MER65-int|LTR|ERV1 29370 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 293-483 chr9 122443315 122443513 + 2 NA Intergenic Intergenic 34512 NM_001004451 347168 Hs.632692 NM_001004451 ENSG00000136834 OR1J1 OR9-18|hg32 olfactory receptor family 1 subfamily J member 1 protein-coding 403-105 chr14 82256077 82256321 + 2 NA Intergenic Intergenic -386433 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 263-292 chr4 74947614 74947790 + 2 NA intron (NM_015393, intron 1 of 3) L1MC5|LINE|L1 14586 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 372-290 chr20 58218988 58219347 + 2 NA intron (NM_001304369, intron 3 of 3) L2a|LINE|L2 9486 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 552-104 chr2 56890930 56891473 + 2 NA Intergenic L1MA9|LINE|L1 -705431 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 379-97 chr14 87916180 87916525 + 2 NA Intergenic L1PA13|LINE|L1 76830 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 441-31 chr10 106083547 106083957 + 2 NA Intergenic Intergenic -56413 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 130-46 chr20 17538355 17538438 + 2 NA intron (NM_001278608, intron 3 of 9) L1MC4|LINE|L1 -7017 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 848-36 chr5 42440318 42440976 + 2 NA intron (NM_001242401, intron 1 of 10) L2a|LINE|L2 15666 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 260-116 chr13 53339833 53340062 + 2 NA Intergenic Intergenic -188047 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 231-45 chr10 123692130 123692357 + 2 NA 3' UTR (NM_153442, exon 3 of 3) 3' UTR (NM_153442, exon 3 of 3) 25888 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 236-197 chr2 224234174 224234348 + 2 NA Intergenic L1PA16|LINE|L1 167733 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 371-211 chr20 10944341 10944573 + 2 NA Intergenic Intergenic -35185 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 452-286 chr9 24555996 24556325 + 2 NA Intergenic MIR|SINE|MIR -10263 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 459-42 chr10 113426145 113426552 + 2 NA Intergenic Intergenic -124483 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 124-53 chr4 61526986 61527108 + 2 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 324875 NM_001371342 536-194 chr6 55444338 55444719 + 2 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 117059 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 238-421 chr9 98363961 98364136 + 2 NA intron (NM_005458, intron 12 of 18) intron (NM_005458, intron 12 of 18) -108399 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 192-50 chr12 65778095 65778230 + 2 NA intron (NR_026825, intron 1 of 1) intron (NR_026825, intron 1 of 1) -46298 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 224-254 chr5 68574817 68574969 + 2 NA Intergenic L1M7|LINE|L1 282316 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 233-307 chr5 81909975 81910161 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -61955 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 259-277 chr4 17291216 17291431 + 2 NA Intergenic L1MC4|LINE|L1 29559 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 338-330 chr3 45690565 45690867 + 2 NA intron (NM_001319073, intron 2 of 20) intron (NM_001319073, intron 2 of 20) 1320 NM_014016 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 295-251 chr20 2286863 2287013 + 2 NA Intergenic Intergenic -9063 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 268-177 chr2 16410928 16411069 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 254836 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 362-240 chr2 208862732 208862975 + 2 NA Intergenic Intergenic 320211 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 309-171 chr15 45290172 45290442 + 2 NA Intergenic Intergenic -11085 NR_120335 101928414 NR_120335 ENSG00000259520 LOC101928414 - uncharacterized LOC101928414 ncRNA 686-58 chr4 60986904 60987561 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 64613 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 332-563 chr9 27508336 27508634 + 2 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -15829 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 246-157 chr17 61625109 61625310 + 2 NA Intergenic AluJb|SINE|Alu -33990 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 202-247 chr8 16655459 16655604 + 2 NA Intergenic L1MEd|LINE|L1 346814 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 320-296 chr2 229174128 229174310 + 2 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 57873 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 252-315 chr5 7642056 7642235 + 2 NA intron (NM_020546, intron 4 of 24) L1PA16|LINE|L1 208988 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 213-113 chr17 34540717 34540896 + 2 NA Intergenic L1MC5a|LINE|L1 38563 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 879-2 chr12 531575 532303 + 2 NA intron (NM_173593, intron 1 of 19) MIRb|SINE|MIR 54547 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 416-355 chr9 119397081 119397447 + 2 NA Intergenic Intergenic -27829 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 334-437 chr5 129255086 129255284 + 2 NA Intergenic L1MA2|LINE|L1 141962 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 495-128 chr20 1042915 1043338 + 2 NA Intergenic Intergenic -40815 NM_001040007 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 257-322 chr5 39341249 39341449 + 2 NA intron (NM_001737, intron 3 of 10) intron (NM_001737, intron 3 of 10) 23146 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 485-78 chr14 62086369 62086772 + 2 NA intron (NM_001367661, intron 8 of 8) MIRb|SINE|MIR -30787 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 282-101 chr12 87456457 87456699 + 2 NA Intergenic L1M3f|LINE|L1 125839 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 275-138 chr16 81349287 81349478 + 2 NA intron (NM_022041, intron 1 of 10) AluJb|SINE|Alu 34416 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 549-109 chr2 80832220 80832711 + 2 NA Intergenic AluSz|SINE|Alu 519086 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 538 chr1 17710464 17710843 + 2 NA Intergenic MIR|SINE|MIR -44680 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 428-123 chr2 56695448 56695774 + 2 NA Intergenic L1ME1|LINE|L1 -509841 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 230-263 chr4 61097499 61097690 + 2 NA Intergenic L1PA3|LINE|L1 -46062 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 258-270 chr3 140628119 140628331 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -49839 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 256-404 chr8 19029201 19029405 + 2 NA Intergenic L1ME1|LINE|L1 -15600 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 543-212 chr6 13450521 13450977 + 2 NA intron (NM_018988, intron 1 of 1) MER68|LTR|ERVL 21314 NR_038459 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 346-109 chr12 83609688 83609924 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 922651 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 398-253 chr4 178222774 178223067 + 2 NA Intergenic Intergenic -314984 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 259-117 chr14 56934837 56935063 + 2 NA Intergenic L1MC5|LINE|L1 121792 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 582-70 chr2 66215191 66215621 + 2 NA Intergenic Intergenic 142922 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 474-271 chr7 81544848 81545305 + 2 NA intron (NR_136264, intron 3 of 4) intron (NR_136264, intron 3 of 4) 16743 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 250-88 chr12 33474505 33474687 + 2 NA Intergenic L1M4|LINE|L1 -34777 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 350-567 chrX 54703167 54703434 + 2 NA Intergenic L1ME3Cz|LINE|L1 94955 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 411-86 chr14 45024298 45024542 + 2 NA intron (NR_131765, intron 7 of 19) intron (NR_131765, intron 7 of 19) -59696 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 243-379 chr6 27369164 27369338 + 2 NA intron (NR_024553, intron 2 of 4) intron (NR_024553, intron 2 of 4) 2274 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 343-377 chr4 31132843 31133079 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -38183 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 292-207 chr2 34208291 34208488 + 2 NA intron (NR_126403, intron 4 of 5) L1PA13|LINE|L1 141163 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 306-74 chr11 36340486 36340738 + 2 NA intron (NM_001160167, intron 1 of 8) MIR|SINE|MIR -35373 NM_001160168 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 383-343 chr6 118955294 118955513 + 2 NA Intergenic L1MB4|LINE|L1 -20241 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 606-141 chr6 93585999 93586458 + 2 NA Intergenic Intergenic -117789 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 277-222 chr20 7866680 7866910 + 2 NA Intergenic Intergenic 73663 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 263-265 chr3 110490813 110490982 + 2 NA Intergenic Intergenic 579062 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 463-166 chr20 56870504 56870803 + 2 NA Intergenic Intergenic 241347 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 389-52 chr11 7723478 7723780 + 2 NA Intergenic Intergenic -17152 NM_001367963 341277 Hs.532475 NM_198185 ENSG00000183378 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 610-154 chr6 162915375 162915766 + 2 NA intron (NM_001080379, intron 2 of 4) L1ME2|LINE|L1 138591 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 356-162 chr15 44179855 44180101 + 2 NA intron (NM_001286490, intron 1 of 15) FAM|SINE|Alu 14468 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 401-80 chr13 108856105 108856455 + 2 NA intron (NM_015011, intron 11 of 34) intron (NM_015011, intron 11 of 34) 226669 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 562-53 chr13 29477416 29477840 + 2 NA intron (NR_046378, intron 2 of 2) LTR82B|LTR|ERVL 10122 NR_046378 100874107 Hs.577987 NR_046378 MTUS2-AS1 - MTUS2 antisense RNA 1 ncRNA 514-265 chr7 24530329 24530782 + 2 NA Intergenic Intergenic -42897 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 889-18 chr2 14062305 14062807 + 2 NA Intergenic Intergenic 338402 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 320-328 chr22 34109809 34109992 + 2 NA Intergenic Intergenic -187012 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 367-320 chr4 31320894 31321145 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 149875 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 158-127 chr9 115401111 115401190 + 2 NA intron (NR_163556, intron 6 of 7) intron (NR_163556, intron 6 of 7) 259332 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 334-440 chr5 138043620 138043934 + 2 NA Intergenic FLAM_C|SINE|Alu -10664 NM_001101801 51306 Hs.567453 NM_016603 ENSG00000031003 FAM13B ARHGAP49|C5orf5|FAM13B1|KHCHP|N61 family with sequence similarity 13 member B protein-coding 228-89 chr13 93013251 93013451 + 2 NA Intergenic AluSx1|SINE|Alu -31990 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 344-11 chr1 77549988 77550199 + 2 NA intron (NM_012093, intron 13 of 13) AluJo|SINE|Alu 132565 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 340-172 chr15 67265903 67266160 + 2 NA intron (NM_001031715, intron 3 of 20) intron (NM_001031715, intron 3 of 20) -10833 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 161-23 chr13 76205424 76205545 + 2 NA Intergenic Intergenic -270352 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 481-300 chr8 124936026 124936382 + 2 NA Intergenic L1MC5|LINE|L1 -5804 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 317-219 chr2 36109868 36110142 + 2 NA Intergenic Intergenic 245565 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 250-299 chr4 18964958 18965151 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -943179 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 214-295 chr7 34889200 34889352 + 2 NA Intergenic L2a|LINE|L2 51558 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 313-387 chr4 74984897 74985107 + 2 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) -14640 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 231-372 chr9 3182494 3182629 + 2 NA intron (NR_121585, intron 1 of 4) intron (NR_121585, intron 1 of 4) 972 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 263-188 chr2 27176538 27176677 + 2 NA Intergenic L1ME4b|LINE|L1 27603 NM_175769 150921 Hs.591583 NM_175769 ENSG00000163792 TCF23 OUT|TCF-23|bHLHa24 transcription factor 23 protein-coding 191-226 chrX 38981960 38982075 + 2 NA Intergenic L2b|LINE|L2 -178134 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 372-10 chr1 54440251 54440543 + 2 NA Intergenic MIRb|SINE|MIR -34003 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 263-448 chr9 31832171 31832369 + 2 NA Intergenic Intergenic -450780 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 703-34 chr15 95809706 95810148 + 2 NA Intergenic L1ME5|LINE|L1 317914 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 360-145 chr15 76834204 76834418 + 2 NA intron (NR_148227, intron 5 of 32) L1PA15|LINE|L1 27633 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 226-183 chr2 143046468 143046674 + 2 NA 3' UTR (NM_003937, exon 14 of 14) 3' UTR (NM_003937, exon 14 of 14) -82848 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 339-553 chr8 4287055 4287225 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 707774 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 267-125 chr15 61347777 61347961 + 2 NA Intergenic L1ME4c|LINE|L1 -118567 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 422-286 chr7 77411497 77411864 + 2 NA intron (NR_146937, intron 1 of 31) L1M5|LINE|L1 -3518 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 506-148 chr2 81073585 81073981 + 2 NA Intergenic L1MDa|LINE|L1 393163 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 299-181 chr18 60719282 60719489 + 2 NA Intergenic Intergenic -346610 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 388-81 chr12 59688350 59688564 + 2 NA promoter-TSS (NR_073056) promoter-TSS (NR_073056) -913 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 332-360 chr3 193900034 193900327 + 2 NA Intergenic Intergenic -56171 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 320-579 chr8 137196311 137196598 + 2 NA Intergenic MIR3|SINE|MIR 217134 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 204-45 chr11 90735059 90735215 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 134065 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 317-253 chr2 150979402 150979620 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 282352 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 359-53 chr10 41810620 41810845 + 2 NA Intergenic ALR/Alpha|Satellite|centr 557313 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 585-65 chr19 39540665 39541109 + 2 NA promoter-TSS (NM_153232) promoter-TSS (NM_153232) -726 NM_153232 163126 Hs.18949 NM_153232 ENSG00000176396 EID2 CRI2|EID-2 EP300 interacting inhibitor of differentiation 2 protein-coding 374-330 chr6 19379734 19380078 + 2 NA Intergenic Intergenic -69915 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 235-356 chr8 84245625 84245833 + 2 NA intron (NM_001354320, intron 2 of 9) L3|LINE|CR1 61063 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 507-19 chr1 199326905 199327245 + 2 NA intron (NR_147896, intron 3 of 3) L1MB2|LINE|L1 178477 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 220-396 chr9 130434882 130435031 + 2 NA TTS (NM_001291815) TTS (NM_001291815) -9751 NM_000050 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 286-429 chr7 71465103 71465344 + 2 NA intron (NM_022479, intron 5 of 10) MER87|LTR|ERV1 -157453 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 554-67 chr13 37026501 37026873 + 2 NA intron (NM_001014286, intron 15 of 25) intron (NM_001014286, intron 15 of 25) 25901 NM_181503 11340 Hs.294041 NM_181503 ENSG00000120699 EXOSC8 CIP3|EAP2|OIP2|PCH1C|RRP43|Rrp43p|bA421P11.3|p9 exosome component 8 protein-coding 344-268 chr20 6225130 6225380 + 2 NA Intergenic L1MC3|LINE|L1 -101711 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 248-333 chr5 171637308 171637541 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -148448 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 289-469 chr8 120822394 120822626 + 2 NA Intergenic Intergenic -10464 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 475-170 chr22 40794346 40794731 + 2 NA non-coding (NR_104235, exon 4 of 11) non-coding (NR_104235, exon 4 of 11) 19420 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 491-117 chr2 59418520 59418894 + 2 NA Intergenic L1ME5|LINE|L1 200999 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 181-10 chr1 209089910 209090051 + 2 NA Intergenic L1ME1|LINE|L1 117526 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 229-208 chr2 173001082 173001285 + 2 NA intron (NM_001282901, intron 10 of 24) intron (NM_001282901, intron 10 of 24) 72978 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 158-14 chr10 58036946 58037035 + 2 NA Intergenic MIRb|SINE|MIR 230904 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 523-289 chr9 113125730 113126133 + 2 NA Intergenic Intergenic 13035 NR_024366 286333 Hs.99052 NR_024366 ENSG00000231528 FAM225A C9orf109|LINC00256A|NCRNA00256A family with sequence similarity 225 member A ncRNA 278-141 chr16 5562874 5563088 + 2 NA Intergenic AluSx1|SINE|Alu 53269 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 306-418 chr5 178654108 178654410 + 2 NA Intergenic L1MA10|LINE|L1 -27209 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 321-68 chr10 82734350 82734565 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -501537 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 273-222 chr2 81150438 81150622 + 2 NA Intergenic Intergenic 316416 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 513-65 chr13 34721270 34721704 + 2 NA Intergenic Intergenic -80802 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 438-170 chr3 89354454 89354715 + 2 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 246963 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 300-256 chr21 35288498 35288737 + 2 NA Intergenic L1MA6|LINE|L1 -239319 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 390-114 chr15 25204388 25204654 + 2 NA TTS (NR_003309).3 TTS (NR_003309).3 164 NR_003311 100033458 NR_003311 ENSG00000199968 SNORD115-19 HBII-52-19 small nucleolar RNA, C/D box 115-19 snoRNA 179-63 chr22 47917104 47917248 + 2 NA Intergenic Intergenic 285502 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 166-47 chr2 57332768 57332900 + 2 NA Intergenic Intergenic -574817 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 521-106 chr18 25846581 25846996 + 2 NA Intergenic Intergenic 243825 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 427-214 chr5 123473267 123473678 + 2 NA Intergenic Intergenic -38627 NM_001031812 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 543-3 chr1 52359625 52360105 + 2 NA exon (NM_001330585, exon 8 of 25) exon (NM_001330585, exon 8 of 25) 6340 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 327-367 chr4 79788585 79788851 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -38753 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 335-290 chr20 15827184 15827419 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 96013 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 338-160 chr14 42666254 42666436 + 2 NA Intergenic AluSq2|SINE|Alu 1059489 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 324-32 chr1 186800854 186801052 + 2 NA Intergenic Intergenic -27947 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 197-42 chr11 64586543 64586679 + 2 NA Intergenic L2a|LINE|L2 -4199 NM_001276327 116085 Hs.174424 NM_144585 ENSG00000197891 SLC22A12 OAT4L|RST|URAT1 solute carrier family 22 member 12 protein-coding 147-82 chr8 52593040 52593144 + 2 NA Intergenic L1MDa|LINE|L1 -27662 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 288-435 chr8 60974017 60974209 + 2 NA Intergenic Intergenic -6365 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 212-245 chr4 129548953 129549129 + 2 NA Intergenic Intergenic 222437 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 284-106 chr13 72185988 72186216 + 2 NA Intergenic Intergenic -318898 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 316-286 chr2 120155113 120155291 + 2 NA intron (NM_001330310, intron 20 of 24) L1MB7|LINE|L1 68198 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 279-199 chr2 152650315 152650589 + 2 NA TTS (NM_052905) TTS (NM_052905) 67009 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 364-49 chr10 22312010 22312299 + 2 NA Intergenic Intergenic -4229 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 BMI1|PCGF4|RNF51 COMMD3-BMI1 readthrough protein-coding 296-509 chrX 94148525 94148673 + 2 NA Intergenic Intergenic 474393 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 425-115 chr18 35320989 35321244 + 2 NA Intergenic AluJb|SINE|Alu 23304 NM_006965 7572 Hs.514802 NM_006965 ENSG00000172466 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 339-424 chr4 130014609 130014792 + 2 NA Intergenic Intergenic 243081 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 275-187 chr2 50265528 50265694 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 82143 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 312-182 chr16 88081501 88081696 + 2 NA Intergenic L1MEd|LINE|L1 19387 NR_120310 400553 Hs.592071 NR_120310 ENSG00000205037 LOC400553 - uncharacterized LOC400553 ncRNA 385-381 chr8 93647357 93647652 + 2 NA intron (NR_033858, intron 5 of 10) intron (NR_033858, intron 5 of 10) 52929 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 577-174 chr6 124546649 124547109 + 2 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 263874 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 171-16 chr10 82533513 82533669 + 2 NA intron (NR_163253, intron 3 of 10) L1M3|LINE|L1 -300671 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 420-116 chr19 29223645 29223983 + 2 NA Intergenic AluSx|SINE|Alu -10663 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 465-8 chr1 75093809 75094131 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -34464 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 159-90 chr7 111717872 111717955 + 2 NA Intergenic Intergenic -90592 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 310-541 chr8 130824460 130824685 + 2 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 216337 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 240-276 chr22 34909370 34909546 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 88458 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 408-282 chr5 160820554 160820861 + 2 NA intron (NM_001366652, intron 1 of 24) L1MA3|LINE|L1 31504 NM_025153 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 292-25 chr1 164367270 164367501 + 2 NA Intergenic Intergenic -191975 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 348-89 chr11 88138457 88138790 + 2 NA intron (NM_022337, intron 2 of 2) MIRb|SINE|MIR 36820 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 344-462 chr7 62831973 62832255 + 2 NA Intergenic ALR/Alpha|Satellite|centr 471942 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 527-32 chr10 61369217 61369539 + 2 NA Intergenic L1ME2z|LINE|L1 -83261 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 324-111 chr12 17037055 17037279 + 2 NA Intergenic LTR16B|LTR|ERVL 48420 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 357-271 chr3 73983301 73983546 + 2 NA Intergenic Intergenic 174179 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 368-297 chr3 98337309 98337558 + 2 NA Intergenic L1ME1|LINE|L1 -16421 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 198-236 chr7 90952856 90953037 + 2 NA intron (NM_012395, intron 7 of 13) intron (NM_012395, intron 7 of 13) 243130 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 565-10 chr1 218935227 218935634 + 2 NA intron (NR_031644, intron 6 of 6) L1PBa|LINE|L1 -16919 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 222-63 chr11 44429098 44429257 + 2 NA Intergenic MER113A|DNA|hAT-Charlie -119038 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 540-158 chr4 74021217 74021593 + 2 NA Intergenic LTR37B|LTR|ERV1 17284 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 447-129 chr2 107096013 107096374 + 2 NA Intergenic Intergenic -209084 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 513-73 chr14 56227255 56227715 + 2 NA intron (NM_021255, intron 2 of 5) L1MC4|LINE|L1 109074 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 331-381 chr4 66102274 66102562 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -174406 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 407-278 chr6 69914612 69914960 + 2 NA intron (NM_001858, intron 4 of 50) intron (NM_001858, intron 4 of 50) 48230 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 374-265 chr3 161475896 161476136 + 2 NA Intergenic Intergenic -20792 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 160-88 chr5 45265281 45265383 + 2 NA intron (NM_021072, intron 7 of 7) intron (NM_021072, intron 7 of 7) 431048 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 337-250 chr2 58020009 58020216 + 2 NA intron (NM_001288838, intron 1 of 15) L1ME4b|LINE|L1 -26530 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 337-478 chr6 39328179 39328489 + 2 NA Intergenic Intergenic -5366 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 397-328 chr8 35417868 35418142 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -126387 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 313-284 chr2 179209583 179209785 + 2 NA intron (NM_178123, intron 1 of 17) L1PB1|LINE|L1 55148 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 154-103 chr8 64813265 64813412 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -14601 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 252-60 chr11 23203580 23203775 + 2 NA Intergenic LTR2752|LTR|ERV1 215513 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 323-406 chr5 26731421 26731661 + 2 NA Intergenic L1PA16|LINE|L1 307045 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 387-148 chr18 61657146 61657445 + 2 NA Intergenic MER77B|LTR|ERVL -90881 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 282-89 chr12 18930807 18931016 + 2 NA Intergenic Intergenic 192792 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 258-310 chr5 14977802 14977963 + 2 NA Intergenic Intergenic -106104 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 664-71 chr3 52039353 52039739 + 2 NA Intergenic Intergenic 17025 NM_001947 1849 Hs.591664 NM_001947 ENSG00000164086 DUSP7 MKPX|PYST2 dual specificity phosphatase 7 protein-coding 304-501 chr8 39386027 39386243 + 2 NA intron (NR_001448, intron 11 of 14) (TA)n|Simple_repeat|Simple_repeat 71472 NR_001448 255926 Hs.369765 NM_001040073 ENSG00000196115 ADAM5 ADAM5P|TMDCII ADAM metallopeptidase domain 5 (pseudogene) pseudo 581-44 chr14 53383592 53383947 + 2 NA Intergenic Intergenic 230415 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 367-175 chr18 9141391 9141628 + 2 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 3946 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 481-67 chr12 19660963 19661252 + 2 NA Intergenic MER74A|LTR|ERVL 220508 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 347-357 chr4 117788054 117788340 + 2 NA Intergenic L1PA16|LINE|L1 -46204 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 243-265 chr22 26628913 26629102 + 2 NA intron (NM_001886, intron 5 of 5) intron (NM_001886, intron 5 of 5) 7044 NM_001886 1413 Hs.57690 NM_001886 ENSG00000196431 CRYBA4 CTRCT23|CYRBA4|MCOPCT4 crystallin beta A4 protein-coding 301-296 chr3 172717355 172717615 + 2 NA Intergenic Intergenic -6418 NM_001146277 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 376-430 chr9 81065442 81065754 + 2 NA Intergenic L1MA2|LINE|L1 623937 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 444-277 chr9 13759494 13759812 + 2 NA Intergenic Intergenic -168318 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 285-55 chr11 20593497 20593700 + 2 NA Intergenic Intergenic -5802 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 285-56 chr11 20918834 20918994 + 2 NA intron (NM_201551, intron 6 of 18) intron (NM_201551, intron 6 of 18) 249328 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 280-122 chr14 61154601 61154778 + 2 NA Intergenic Intergenic 126649 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 493-220 chr4 28838792 28839164 + 2 NA Intergenic Intergenic 19396 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 129-46 chr2 195154141 195154263 + 2 NA Intergenic Intergenic 423607 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 281-125 chr14 83071602 83071791 + 2 NA Intergenic L1MA9|LINE|L1 429064 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 416-133 chr16 10640723 10641095 + 2 NA intron (NM_144674, intron 5 of 6) L1ME1|LINE|L1 54021 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 471-42 chr11 29662061 29662497 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 43477 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 181-70 chr2 122006470 122006596 + 2 NA Intergenic L1M5|LINE|L1 250882 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 762-62 chr6 140647492 140648006 + 2 NA Intergenic HERVL-int|LTR|ERVL -36065 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 231-225 chr3 63457584 63457769 + 2 NA intron (NR_046677, intron 1 of 4) intron (NR_046677, intron 1 of 4) 14364 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 489-13 chr1 176583410 176583804 + 2 NA intron (NM_021936, intron 2 of 4) L1MA5A|LINE|L1 120432 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 307-237 chr2 67895426 67895622 + 2 NA Intergenic Intergenic -69962 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 377-44 chr10 54016689 54016989 + 2 NA intron (NM_001354411, intron 21 of 34) L1PA16|LINE|L1 -469391 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 290-30 chr1 219117091 219117349 + 2 NA intron (NR_038845, intron 3 of 4) L1PA13|LINE|L1 56568 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 537-115 chr2 88502720 88503070 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -21754 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 383-286 chr4 73997904 73998235 + 2 NA exon (NM_002994, exon 3 of 4) exon (NM_002994, exon 3 of 4) 608 NM_002994 6374 Hs.89714 NM_002994 ENSG00000163735 CXCL5 ENA-78|SCYB5 C-X-C motif chemokine ligand 5 protein-coding 498-74 chr13 84980886 84981226 + 2 NA Intergenic Intergenic 167001 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 156-15 chr10 129099441 129099582 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 186678 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 551-79 chr18 77934178 77934581 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 59348 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 207-14 chr1 114160396 114160558 + 2 NA Intergenic MIR|SINE|MIR -6608 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 328-61 chr10 106898142 106898347 + 2 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 266462 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 353-9 chr1 50337234 50337469 + 2 NA Intergenic MIR|SINE|MIR 86092 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 301-360 chr5 99440892 99441076 + 2 NA Intergenic Intergenic -93006 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 391-326 chr7 37321219 37321550 + 2 NA intron (NM_001206480, intron 2 of 21) intron (NM_001206480, intron 2 of 21) 32284 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 295-104 chr12 115057775 115057964 + 2 NA Intergenic L1M4|LINE|L1 -373694 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 304-310 chr21 26362141 26362426 + 2 NA Intergenic Intergenic -31352 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 421-89 chr14 96674788 96675022 + 2 NA Intergenic Intergenic -66286 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 408-95 chr13 31495125 31495424 + 2 NA Intergenic L1MDa|LINE|L1 -244252 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 350-458 chr6 161951430 161951711 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 480593 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 328-377 chr3 178790672 178790965 + 2 NA intron (NR_126560, intron 2 of 7) L1M1|LINE|L1 69587 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 469-237 chr6 25049536 25049924 + 2 NA Intergenic L1PA16|LINE|L1 -7442 NM_001286446 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 510-67 chr13 34186990 34187468 + 2 NA Intergenic Intergenic -160814 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 551-9 chr1 115129600 115129937 + 2 NA Intergenic Intergenic -40265 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 278-65 chr12 7436058 7436269 + 2 NA intron (NM_001297650, intron 2 of 19) L1ME3F|LINE|L1 8022 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 362-286 chr3 188148804 188149072 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -4960 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 335-90 chr11 39905600 39905861 + 2 NA Intergenic Intergenic 387400 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 361-381 chr5 155748936 155749219 + 2 NA Intergenic Intergenic -577680 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 160-6 chr1 170097636 170097762 + 2 NA Intergenic Intergenic -22961 NM_001204516 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 350-253 chr2 158208941 158209221 + 2 NA intron (NR_038850, intron 4 of 4) (TATATA)n|Simple_repeat|Simple_repeat 42431 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 194-107 chr20 7835113 7835293 + 2 NA Intergenic Intergenic 105255 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 276-264 chr20 43293317 43293545 + 2 NA Intergenic Intergenic -103525 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 493-234 chr5 12477479 12477923 + 2 NA Intergenic L1M5|LINE|L1 -97156 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 306-538 chr9 8762145 8762328 + 2 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -28290 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 336-549 chr8 110798073 110798287 + 2 NA Intergenic Intergenic 229253 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 297-425 chr7 10048103 10048314 + 2 NA Intergenic Intergenic 413938 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 433-92 chr15 60431722 60431957 + 2 NA intron (NR_147171, intron 15 of 16) intron (NR_147171, intron 15 of 16) -33853 NM_001002857 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 241-265 chr4 53800602 53800816 + 2 NA Intergenic Intergenic 104808 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 423-30 chr10 82331684 82332005 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -98924 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 314-157 chr13 101410727 101410927 + 2 NA intron (NM_001350749, intron 1 of 43) intron (NM_001350749, intron 1 of 43) 5681 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 431-303 chr8 129834187 129834483 + 2 NA Intergenic HAL1|LINE|L1 -47711 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 359-2 chr1 7071983 7072200 + 2 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 286637 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 354-273 chr22 10729030 10729239 + 2 NA Intergenic (TCCATTCCAT)n|Simple_repeat|Simple_repeat 232395 NR_132320 102723780 NR_132320 FRG1FP - FSHD region gene 1 family member F, pseudogene pseudo 457-131 chr2 208487395 208487737 + 2 NA intron (NM_005048, intron 10 of 12) MLT1F2|LTR|ERVL-MaLR -55076 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 193-5 chr1 49388468 49388601 + 2 NA intron (NR_046839, intron 3 of 3) MIR|SINE|MIR 83551 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 375-347 chr6 13234520 13234734 + 2 NA intron (NM_001322308, intron 9 of 13) intron (NM_001322308, intron 9 of 13) 48815 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 326-494 chr7 46881865 46882114 + 2 NA Intergenic LTR50|LTR|ERVL -184867 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 212-173 chr2 155945823 155946007 + 2 NA Intergenic Intergenic 309016 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 386-291 chr5 66416458 66416702 + 2 NA Intergenic Intergenic 95024 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 530-50 chr12 4238859 4239339 + 2 NA Intergenic L1MA4A|LINE|L1 -34663 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 253-214 chr20 1349826 1350028 + 2 NA intron (NR_040047, intron 1 of 2) L1MA3|LINE|L1 -20788 NM_080489 27111 Hs.657015 NM_015685 ENSG00000125775 SDCBP2 SITAC|SITAC18|ST-2|ST2 syndecan binding protein 2 protein-coding 268-434 chr9 31029947 31030149 + 2 NA Intergenic Intergenic 351442 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 485-61 chr13 22372304 22372691 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 162212 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 577-121 chr3 109036953 109037435 + 2 NA intron (NM_014429, intron 14 of 27) LTR47A|LTR|ERVL -64262 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 543-226 chr7 33268843 33269228 + 2 NA intron (NM_198428, intron 7 of 22) intron (NM_198428, intron 7 of 22) 139471 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 694 chr1 37116256 37116700 + 2 NA Intergenic AluSz|SINE|Alu -45085 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 398-303 chr6 120162454 120162744 + 2 NA Intergenic MIR|SINE|MIR 147420 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 636-10 chr1 195667960 195668464 + 2 NA Intergenic Intergenic 420503 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 349-488 chr8 10923853 10924107 + 2 NA intron (NM_173683, intron 2 of 2) L3|LINE|CR1 83954 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 339-509 chr6 154194256 154194590 + 2 NA intron (NM_015553, intron 10 of 11) intron (NM_015553, intron 10 of 11) 104661 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 1076-25 chr8 139196747 139197543 + 2 NA Intergenic LTR82A|LTR|ERVL -283104 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 295-182 chr18 9240604 9240784 + 2 NA intron (NM_001204056, intron 7 of 11) intron (NM_001204056, intron 7 of 11) -94079 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 222-385 chr8 142842646 142842822 + 2 NA intron (NM_002066, intron 3 of 3) LTR33C|LTR|ERVL 7933 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 283-53 chr10 56471136 56471379 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -109984 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 414-323 chr8 62641827 62642091 + 2 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -335902 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 196-244 chr8 24234451 24234572 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -59529 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 370-153 chr14 100544925 100545269 + 2 NA intron (NM_001159531, intron 2 of 5) intron (NM_001159531, intron 2 of 5) 22973 NM_001159531 57596 Hs.211751 NM_020836 ENSG00000183092 BEGAIN - brain enriched guanylate kinase associated protein-coding 421-326 chrX 58123272 58123554 + 2 NA Intergenic HSAT4|Satellite|centr -212780 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 227-92 chr13 26118321 26118480 + 2 NA Intergenic Intergenic -58878 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 257-9 chr1 82432782 82433005 + 2 NA Intergenic Intergenic -470290 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 309-330 chr22 34431935 34432164 + 2 NA Intergenic Intergenic -509161 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 535-239 chr8 57883355 57883823 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -94769 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 236-253 chr4 45041753 45041940 + 2 NA Intergenic Intergenic -315212 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 724-87 chr6 120656530 120657052 + 2 NA Intergenic Intergenic 641612 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 423-144 chr2 167317639 167318027 + 2 NA Intergenic Intergenic 130461 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 404-265 chr5 148517560 148517873 + 2 NA intron (NM_001040172, intron 4 of 5) L2a|LINE|L2 119345 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 263-391 chr7 34133300 34133496 + 2 NA intron (NM_133468, intron 14 of 15) MER21C|LTR|ERVL 227859 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 531-64 chr14 73423819 73424270 + 2 NA intron (NM_001005743, intron 1 of 12) intron (NM_001005743, intron 1 of 12) 34536 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 445-44 chr12 11588163 11588539 + 2 NA Intergenic AluSx1|SINE|Alu 40321 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 493-109 chr17 57792161 57792602 + 2 NA Intergenic AluSx1|SINE|Alu -47082 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 541-151 chr3 14219448 14219829 + 2 NA Intergenic L1MB5|LINE|L1 40821 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 166-45 chr2 51106627 51106762 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 74093 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 468-36 chr10 93433677 93433990 + 2 NA intron (NM_013451, intron 3 of 53) intron (NM_013451, intron 3 of 53) 48501 NM_013451 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 395-295 chr6 125824042 125824401 + 2 NA intron (NM_001199621, intron 2 of 14) intron (NM_001199621, intron 2 of 14) -5363 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 291-316 chr4 45025667 45025840 + 2 NA Intergenic Intergenic -299119 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 321-10 chr1 51469215 51469375 + 2 NA intron (NM_001981, intron 4 of 24) intron (NM_001981, intron 4 of 24) -47200 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 404-144 chr18 56538284 56538642 + 2 NA Intergenic Intergenic 100129 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 286-230 chr2 198564098 198564307 + 2 NA Intergenic L1PA15|LINE|L1 -189105 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 317-333 chr4 14725322 14725523 + 2 NA intron (NR_126435, intron 2 of 6) intron (NR_126435, intron 2 of 6) 162747 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 365-35 chr1 247205222 247205426 + 2 NA Intergenic Intergenic -3264 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 267-52 chr10 69604858 69605008 + 2 NA Intergenic L1MD1|LINE|L1 -25314 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 248-267 chr4 23526456 23526611 + 2 NA Intergenic L1PA14|LINE|L1 354759 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 324-455 chr6 39463424 39463696 + 2 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -32170 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 251-429 chrX 36449724 36449918 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -9529 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 220-346 chr7 69070245 69070392 + 2 NA Intergenic Intergenic 527306 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 583-138 chr5 130437531 130438002 + 2 NA Intergenic L1M1|LINE|L1 533301 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 336-368 chr3 70364456 70364779 + 2 NA Intergenic L1M7|LINE|L1 -51979 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 241-362 chr7 29385984 29386176 + 2 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -93632 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 391-308 chr6 64430960 64431203 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 624245 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 299-383 chr5 126117071 126117248 + 2 NA Intergenic Intergenic -62418 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 355-343 chr3 165568982 165569182 + 2 NA Intergenic L1MC2|LINE|L1 268341 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 306-34 chr1 175441415 175441679 + 2 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -248560 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 244-96 chr14 70441737 70441869 + 2 NA Intergenic HERV3-int|LTR|ERV1 -10371 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 393-241 chr4 66052088 66052458 + 2 NA Intergenic Intergenic -224551 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 372-435 chr6 74195513 74195782 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 126196 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 383-164 chr18 61114671 61114927 + 2 NA Intergenic LTR80B|LTR|ERVL -218631 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 276-17 chr1 116737261 116737519 + 2 NA Intergenic MIRc|SINE|MIR -17040 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 373-430 chr9 26356991 26357236 + 2 NA Intergenic Intergenic 290438 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 371-339 chr6 74361170 74361465 + 2 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 291866 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 229-134 chr16 34080789 34081001 + 2 NA Intergenic Intergenic -82683 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 319-65 chr10 70632261 70632420 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -29552 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 271-236 chr20 60724625 60724853 + 2 NA Intergenic Intergenic 160177 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 536-106 chr19 37044616 37045041 + 2 NA Intergenic AluSq2|SINE|Alu -33394 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 226-96 chr14 67730473 67730638 + 2 NA intron (NM_152443, intron 8 of 8) Tigger4a|DNA|TcMar-Tigger 28669 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 285-116 chr14 48520715 48520946 + 2 NA Intergenic Intergenic -725816 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 398-289 chr6 19664886 19665135 + 2 NA Intergenic Intergenic 139749 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 409-9 chr1 187087975 187088324 + 2 NA Intergenic L1MEg|LINE|L1 -4693 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 764-60 chr6 73909813 73910491 + 2 NA Intergenic LTR12C|LTR|ERV1 -159299 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 348-498 chr7 90668090 90668281 + 2 NA intron (NM_001287135, intron 2 of 14) L1MB7|LINE|L1 -41213 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 297-532 chrX 146391700 146391915 + 2 NA Intergenic L1M1|LINE|L1 -363935 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 308-381 chr5 60694434 60694640 + 2 NA intron (NM_001145208, intron 1 of 9) L1ME4b|LINE|L1 5629 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 675-10 chr10 41723913 41724526 + 2 NA Intergenic ALR/Alpha|Satellite|centr 643826 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 413-249 chr5 147363639 147364000 + 2 NA intron (NM_001112724, intron 8 of 12) MLT1A-int|LTR|ERVL-MaLR 89873 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 504-74 chr14 85421980 85422462 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 28306 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 153-77 chr5 13859740 13859859 + 2 NA intron (NM_001369, intron 29 of 78) intron (NM_001369, intron 29 of 78) 84681 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 501-126 chr2 220361866 220362241 + 2 NA Intergenic L1ME3C|LINE|L1 -455488 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 357-111 chr14 43008508 43008837 + 2 NA Intergenic Intergenic 1401816 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 678-114 chr9 119486274 119486849 + 2 NA Intergenic L1MA9|LINE|L1 -117126 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 441-112 chr2 5153534 5153825 + 2 NA Intergenic L2|LINE|L2 -497457 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 340-339 chr21 34945661 34945937 + 2 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -57100 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 301-112 chr14 39668666 39668860 + 2 NA Intergenic L2|LINE|L2 -236263 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 189-70 chr17 15706734 15706911 + 2 NA intron (NM_020652, intron 4 of 5) MLT1K|LTR|ERVL-MaLR 7070 NM_001288643 57335 Hs.585799 NM_020652 ENSG00000187607 ZNF286A ZNF286 zinc finger protein 286A protein-coding 288-207 chr2 123837396 123837602 + 2 NA Intergenic Intergenic 187675 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 262-110 chr13 75204675 75204843 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 35622 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 210-109 chr19 38459594 38459765 + 2 NA intron (NM_001042723, intron 19 of 104) intron (NM_001042723, intron 19 of 104) 25979 NM_000540 6261 Hs.466664 NM_000540 ENSG00000196218 RYR1 CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR ryanodine receptor 1 protein-coding 336-581 chr9 72186298 72186530 + 2 NA intron (NM_001351571, intron 1 of 13) L2a|LINE|L2 36974 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 340-589 chrX 146547750 146547962 + 2 NA Intergenic Intergenic -261915 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 520-15 chr1 160860345 160860826 + 2 NA intron (NM_001166664, intron 1 of 7) L1MC4|LINE|L1 2302 NM_016382 51744 Hs.157872 NM_016382 ENSG00000122223 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule protein-coding 275-303 chr5 162087582 162087797 + 2 NA intron (NM_198904, intron 1 of 9) intron (NM_198904, intron 1 of 9) 20047 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 339-431 chr4 170337471 170337734 + 2 NA Intergenic Intergenic 111011 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 255-369 chr6 153902079 153902323 + 2 NA Intergenic L1MA2|LINE|L1 -108295 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 320-363 chr3 138829826 138830067 + 2 NA intron (NM_006219, intron 1 of 23) intron (NM_006219, intron 1 of 23) 4982 NM_006219 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 287-207 chr2 139001180 139001411 + 2 NA Intergenic Intergenic 103971 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 127-15 chr11 21352366 21352432 + 2 NA intron (NM_201551, intron 14 of 18) L2a|LINE|L2 682813 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 253-404 chr8 48852493 48852679 + 2 NA Intergenic Intergenic 68843 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 373-212 chr2 144173929 144174289 + 2 NA intron (NM_001284234, intron 2 of 9) intron (NM_001284234, intron 2 of 9) 37470 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 616-181 chr9 86660517 86660988 + 2 NA Intergenic MER47B|DNA|TcMar-Tigger 286754 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 249-251 chr3 3923098 3923273 + 2 NA Intergenic L2|LINE|L2 -122310 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 358-130 chr14 101510267 101510482 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 50048 NR_031649 100302145 NR_031649 ENSG00000283857 MIR1247 MIRN1247|hsa-mir-1247|mir-1247 microRNA 1247 ncRNA 348-203 chr18 56381285 56381500 + 2 NA Intergenic Intergenic -190130 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 297-294 chr3 86086960 86087236 + 2 NA Intergenic Intergenic -259048 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 393-386 chr9 78995806 78996168 + 2 NA Intergenic L1MB7|LINE|L1 149679 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 252-110 chr14 23868637 23868856 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -85024 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 295-315 chr3 180520876 180521079 + 2 NA Intergenic L1PA13|LINE|L1 -81186 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 297-224 chr2 127849791 127850060 + 2 NA intron (NM_004805, intron 3 of 3) L1M5|LINE|L1 8230 NM_004805 5433 Hs.715348 NM_004805 ENSG00000144231 POLR2D HSRBP4|HSRPB4|RBP4|RPB16 RNA polymerase II subunit D protein-coding 157-58 chr2 53524649 53524780 + 2 NA Intergenic Intergenic -243069 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 339-75 chr10 107491617 107491808 + 2 NA Intergenic Intergenic -327006 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 524-213 chr5 174275452 174275831 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -60713 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 316-562 chr8 119113399 119113631 + 2 NA Intergenic Intergenic -44733 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 251-294 chr5 31228319 31228510 + 2 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 34728 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 336-354 chr22 32106293 32106524 + 2 NA intron (NM_000343, intron 14 of 14) L1MA1|LINE|L1 -15569 NR_040114 23782 Hs.581098 NR_040114 ENSG00000234479 AP1B1P1 ADTB1L1|dJ127L4.2 AP1B1 pseudogene 1 pseudo 487-133 chr2 21177610 21178087 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 53862 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 246-244 chr22 32701522 32701680 + 2 NA intron (NM_003490, intron 6 of 13) L1MEc|LINE|L1 -99215 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 205-235 chr6 27161611 27161764 + 2 NA Intergenic Intergenic 14061 NR_036096 100422934 NR_036096 ENSG00000265565 MIR3143 mir-3143 microRNA 3143 ncRNA 256-211 chr2 124387186 124387418 + 2 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 362015 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 386-299 chr5 121161971 121162256 + 2 NA Intergenic Intergenic -160437 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 247-346 chr5 156772773 156772950 + 2 NA Intergenic Intergenic -77434 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 637-67 chr2 157951596 157952178 + 2 NA Intergenic AluSx|SINE|Alu -43292 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 241-223 chr21 18580796 18580938 + 2 NA intron (NR_109925, intron 3 of 3) intron (NR_109925, intron 3 of 3) 105297 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 356-295 chr20 62867217 62867467 + 2 NA Intergenic L1MEc|LINE|L1 -5520 NM_001301726 10732 Hs.126248 NM_006602 ENSG00000101190 TCFL5 CHA|E2BP-1|Figlb|SOSF1|bHLHe82 transcription factor like 5 protein-coding 220-174 chr2 107208015 107208199 + 2 NA intron (NR_049853, intron 2 of 3) LTR49-int|LTR|ERV1 141418 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 218-121 chr17 32198762 32198936 + 2 NA intron (NM_001033566, intron 11 of 19) intron (NM_001033566, intron 11 of 19) -47278 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 434-218 chr5 12620627 12620980 + 2 NA intron (NR_033383, intron 2 of 3) L1PB3|LINE|L1 45946 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 272-61 chr10 99467435 99467642 + 2 NA Intergenic Intergenic -36914 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 244-282 chr4 166203765 166204002 + 2 NA Intergenic Intergenic 330646 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 257-102 chr13 89424971 89425223 + 2 NA Intergenic Intergenic 75412 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 306-439 chr6 85246540 85246695 + 2 NA Intergenic L1MC|LINE|L1 143569 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 439-197 chr4 450255 450635 + 2 NA intron (NM_133474, intron 2 of 2) L1MA6|LINE|L1 23764 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 175-46 chr14 45974254 45974365 + 2 NA Intergenic L1MD2|LINE|L1 -89850 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 200-148 chr2 226244829 226244987 + 2 NA Intergenic L1MEc|LINE|L1 102114 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 446-276 chr7 37010825 37011194 + 2 NA intron (NR_104120, intron 2 of 2) intron (NR_104120, intron 2 of 2) 13213 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 250-302 chr4 33743895 33744090 + 2 NA Intergenic Intergenic 295901 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 277-113 chr14 48955647 48955823 + 2 NA Intergenic AluJo|SINE|Alu 630645 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 544-197 chr6 70725611 70726013 + 2 NA intron (NM_001281440, intron 1 of 10) intron (NM_001281440, intron 1 of 10) 57282 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 285-145 chr16 54089607 54089847 + 2 NA intron (NM_001363988, intron 9 of 9) L1MB4|LINE|L1 50334 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 483-247 chr7 55462206 55462572 + 2 NA Intergenic L1MA4A|LINE|L1 64491 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 353-145 chr14 63327708 63327885 + 2 NA Intergenic Intergenic -8861 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 347-552 chr9 84197838 84198059 + 2 NA Intergenic Intergenic 134505 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 517-274 chr8 121282589 121282876 + 2 NA Intergenic Intergenic -356614 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 284-350 chr6 62931118 62931335 + 2 NA Intergenic Intergenic 388751 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 395-240 chr3 189877788 189878145 + 2 NA intron (NM_003722, intron 10 of 13) FLAM_A|SINE|Alu 48044 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 241-392 chr8 56724294 56724467 + 2 NA Intergenic L1M5|LINE|L1 -164557 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 297-158 chr16 50409692 50409909 + 2 NA Intergenic L1MC5a|LINE|L1 -14667 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 477-30 chr10 8805022 8805418 + 2 NA Intergenic LTR33|LTR|ERVL -92769 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 498-90 chr14 83817804 83818189 + 2 NA Intergenic L2c|LINE|L2 1175364 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 368-83 chr11 82332775 82333083 + 2 NA intron (NR_120571, intron 3 of 7) MIRb|SINE|MIR 70984 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 319-138 chr14 48182561 48182755 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -387644 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 424-170 chr3 28589960 28590272 + 2 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 14838 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 746-36 chr2 35255429 35256006 + 2 NA Intergenic Intergenic -215688 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 356-28 chr1 210818352 210818685 + 2 NA intron (NM_002238, intron 7 of 10) MIRb|SINE|MIR 314856 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 225-276 chr5 40313315 40313482 + 2 NA Intergenic Intergenic 261107 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 664-45 chr15 100499916 100500338 + 2 NA intron (NM_001290341, intron 5 of 13) intron (NM_001290341, intron 5 of 13) 44159 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 349-510 chr8 124893490 124893811 + 2 NA Intergenic Intergenic -48358 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 328-25 chr1 174524895 174525130 + 2 NA intron (NM_001366446, intron 13 of 25) L1MA4A|LINE|L1 77048 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 551-25 chr10 122686463 122686808 + 2 NA Intergenic AluSx1|SINE|Alu 13211 NM_001010912 399814 Hs.363649 NM_001010912 ENSG00000183559 C10orf120 bA318C4.1 chromosome 10 open reading frame 120 protein-coding 669-25 chr14 49089744 49090244 + 2 NA Intergenic Intergenic 496386 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 496-8 chr1 54824290 54824569 + 2 NA intron (NM_001110533, intron 9 of 9) L1M2|LINE|L1 18366 NM_152607 163747 Hs.376018 NM_152607 ENSG00000162398 LEXM C1orf177|LEM lymphocyte expansion molecule protein-coding 421-106 chr17 51337383 51337714 + 2 NA non-coding (NR_122104, exon 1 of 3) non-coding (NR_122104, exon 1 of 3) 833 NR_122104 440446 Hs.626751 NR_122104 ENSG00000267452 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 325-504 chr7 53509412 53509662 + 2 NA Intergenic Intergenic 302394 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 191-55 chr14 61747830 61747987 + 2 NA non-coding (NR_045406, exon 1 of 1) non-coding (NR_045406, exon 1 of 1) 1181 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 490-179 chr3 31345166 31345601 + 2 NA Intergenic L1M5|LINE|L1 -183596 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 495-223 chr6 141136166 141136536 + 2 NA Intergenic Intergenic 452537 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 224-359 chrX 50306754 50306920 + 2 NA intron (NM_033031, intron 5 of 12) L1MB7|LINE|L1 22295 NM_033670 85417 Hs.130310 NM_033031 ENSG00000147082 CCNB3 - cyclin B3 protein-coding 481-306 chr8 135389700 135390115 + 2 NA Intergenic Intergenic -67549 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 325-119 chr12 7105910 7106135 + 2 NA intron (NM_001297642, intron 2 of 5) HAL1|LINE|L1 -2286 NR_026947 283314 Hs.744212 NR_026947 ENSG00000205885 C1RL-AS1 MATL2963 C1RL antisense RNA 1 ncRNA 201-43 chr11 38152322 38152473 + 2 NA Intergenic L1MA4A|LINE|L1 213796 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 315-252 chr2 115334316 115334532 + 2 NA intron (NM_001321909, intron 2 of 24) intron (NM_001321909, intron 2 of 24) -9391 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 588-11 chr10 65132592 65132989 + 2 NA Intergenic L1ME2z|LINE|L1 -208272 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 806-55 chrX 96418355 96419026 + 2 NA Intergenic AluJb|SINE|Alu -80788 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 189-5 chr1 115819818 115819952 + 2 NA Intergenic L1ME1|LINE|L1 20818 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 516-246 chr8 46061878 46062317 + 2 NA Intergenic ALR/Alpha|Satellite|centr 555546 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 330-105 chr11 113678866 113679163 + 2 NA Intergenic L2b|LINE|L2 27294 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 203-158 chr3 182610458 182610561 + 2 NA Intergenic MIR3|SINE|MIR -103385 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 286-312 chr4 55068976 55069125 + 2 NA Intergenic Intergenic 56545 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 248-31 chr10 29092665 29092810 + 2 NA Intergenic Intergenic -196333 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 118-31 chr21 29647910 29647999 + 2 NA intron (NM_000830, intron 6 of 16) intron (NM_000830, intron 6 of 16) 51914 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 199-232 chr8 38862027 38862171 + 2 NA Intergenic AluSc|SINE|Alu -39247 NM_021623 59339 Hs.369123 NM_021623 ENSG00000169499 PLEKHA2 TAPP2 pleckstrin homology domain containing A2 protein-coding 309-64 chr10 106334082 106334330 + 2 NA Intergenic Intergenic 194041 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 333-425 chr5 4983624 4983936 + 2 NA Intergenic Intergenic -50579 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 363-426 chr7 141938762 141939075 + 2 NA intron (NM_001301167, intron 3 of 5) L1MA3|LINE|L1 8056 NM_013252 23601 Hs.446235 NM_013252 ENSG00000258227 CLEC5A CLECSF5|MDL-1|MDL1 C-type lectin domain containing 5A protein-coding 340-190 chr16 62570271 62570474 + 2 NA Intergenic MIRb|SINE|MIR -533934 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 237-41 chr10 117980654 117980817 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -66086 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 365-163 chr18 9466474 9466824 + 2 NA Intergenic L1MB3|LINE|L1 -8864 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 334-160 chr14 86041566 86041811 + 2 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 107010 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 604-43 chr13 78801270 78801676 + 2 NA intron (NR_046869, intron 2 of 4) THE1B|LTR|ERVL-MaLR 38577 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 354-475 chr8 126137339 126137651 + 2 NA Intergenic Intergenic -186298 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 217-123 chr14 98194048 98194193 + 2 NA Intergenic Intergenic -215996 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 344-208 chr19 30386075 30386360 + 2 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 13833 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 405-176 chr20 8890887 8891285 + 2 NA Intergenic L1MB7|LINE|L1 59901 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 279-235 chr21 30395394 30395653 + 2 NA promoter-TSS (NM_181599) promoter-TSS (NM_181599) -508 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 239-286 chr4 111773187 111773366 + 2 NA Intergenic Intergenic -372178 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 225-261 chr5 4789104 4789321 + 2 NA Intergenic L1MC2|LINE|L1 15731 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 529-42 chr12 13586440 13586792 + 2 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -209871 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 198-122 chr2 67806837 67806967 + 2 NA intron (NR_110271, intron 2 of 2) Charlie8|DNA|hAT-Charlie 18660 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 209-62 chr11 126975393 126975580 + 2 NA intron (NM_001301097, intron 1 of 15) L2b|LINE|L2 13056 NR_036126 100422918 NR_036126 ENSG00000266215 MIR3167 - microRNA 3167 ncRNA 270-30 chr10 27483609 27483842 + 2 NA Intergenic Intergenic -20449 NM_001256412 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 401-192 chr21 19652957 19653213 + 2 NA Intergenic Intergenic 246670 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 454-28 chr10 75461275 75461601 + 2 NA intron (NM_001305581, intron 2 of 6) MER39|LTR|ERV1 29814 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 257-131 chr16 13323001 13323218 + 2 NA Intergenic MIR|SINE|MIR 421511 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 391-11 chr1 83995699 83996079 + 2 NA intron (NM_001350214, intron 1 of 21) L1ME4c|LINE|L1 3243 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 182-132 chr5 18738356 18738486 + 2 NA Intergenic L2c|LINE|L2 931147 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 316-465 chr5 146740787 146741094 + 2 NA intron (NM_001271899, intron 2 of 9) AluSc|SINE|Alu 137845 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 435-172 chr4 95201743 95202087 + 2 NA intron (NM_003728, intron 12 of 15) intron (NM_003728, intron 12 of 15) 110424 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 451-193 chr6 4584602 4585008 + 2 NA Intergenic Intergenic -25760 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 253-99 chr12 28650198 28650409 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -459565 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 125-73 chrX 71317200 71317294 + 2 NA Intergenic L1MC5|LINE|L1 15497 NM_001303277 26548 Hs.109999 NM_012278 ENSG00000147166 ITGB1BP2 CHORDC3|ITGB1BP|MELUSIN|MSTP015 integrin subunit beta 1 binding protein 2 protein-coding 246-128 chr15 26995465 26995693 + 2 NA intron (NM_001270873, intron 2 of 5) L1M4b|LINE|L1 24398 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 392-140 chr2 28105347 28105574 + 2 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 101501 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 696-91 chr6 156088065 156088469 + 2 NA Intergenic L1PA10|LINE|L1 141470 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 551-46 chr13 77362899 77363408 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -36059 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 421-26 chr10 32572449 32572810 + 2 NA intron (NM_001321115, intron 17 of 43) intron (NM_001321115, intron 17 of 43) 126489 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 329-76 chr10 104103403 104103648 + 2 NA Intergenic Intergenic -17645 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 318-488 chr6 132696184 132696360 + 2 NA intron (NM_004666, intron 2 of 6) L1M4c|LINE|L1 17783 NM_004666 8876 Hs.12114 NM_004666 ENSG00000112299 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 305-405 chr4 133925864 133926153 + 2 NA Intergenic Intergenic 275781 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 501-189 chr4 62901308 62901674 + 2 NA Intergenic Intergenic -739726 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 358-467 chr8 56954523 56954866 + 2 NA Intergenic L1ME4a|LINE|L1 39173 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 454-297 chr7 62965151 62965503 + 2 NA Intergenic ALR/Alpha|Satellite|centr 338729 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 596-76 chr17 34515246 34515691 + 2 NA Intergenic L3|LINE|CR1 63901 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 286-4 chr1 14531559 14531840 + 2 NA Intergenic MIRc|SINE|MIR -66986 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 245-114 chr13 73145180 73145348 + 2 NA Intergenic L2b|LINE|L2 86259 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 358-409 chr6 78479750 78480095 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 59387 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 200-102 chr17 21881044 21881182 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 188590 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 406-65 chr12 125517854 125518198 + 2 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) -104426 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 184-183 chr9 84814771 84814906 + 2 NA 3' UTR (NM_001369552, exon 10 of 10) 3' UTR (NM_001369552, exon 10 of 10) 108937 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 323-249 chr2 65821669 65821856 + 2 NA Intergenic Intergenic -389163 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 160-69 chr3 94938651 94938752 + 2 NA intron (NR_015400, intron 1 of 7) L1MEg|LINE|L1 438 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 328-260 chr2 56886855 56887119 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -701217 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 177-104 chr3 69645766 69645911 + 2 NA Intergenic Intergenic -93626 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 353-222 chr19 32212008 32212193 + 2 NA Intergenic L1MD1|LINE|L1 -106184 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 694-61 chr19 57973185 57973643 + 2 NA intron (NM_152474, intron 2 of 5) intron (NM_152474, intron 2 of 5) 1120 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 265-201 chr2 172433076 172433335 + 2 NA intron (NM_001365530, intron 1 of 25) intron (NM_001365530, intron 1 of 25) 5619 NM_001365530 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 557-10 chr1 103996955 103997412 + 2 NA Intergenic Intergenic -75840 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 252-175 chr2 3231600 3231781 + 2 NA intron (NM_001330531, intron 3 of 7) L1MA9|LINE|L1 -105664 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 384-347 chr7 57151998 57152248 + 2 NA Intergenic Intergenic -12259 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 619-19 chr10 48571032 48571528 + 2 NA intron (NR_144642, intron 2 of 9) intron (NR_144642, intron 2 of 9) 33793 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 277-317 chr5 41621063 41621320 + 2 NA Intergenic Intergenic -110590 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 360-133 chr14 98406725 98406952 + 2 NA Intergenic L1MC4|LINE|L1 -304775 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 329-192 chr15 80758461 80758730 + 2 NA Intergenic Intergenic -20775 NM_018689 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 210-155 chr20 53392533 53392687 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -160160 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 155-80 chr5 82440735 82440838 + 2 NA Intergenic Intergenic 161324 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 420-26 chr1 232406685 232407094 + 2 NA intron (NM_020808, intron 17 of 20) intron (NM_020808, intron 17 of 20) 108719 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 351-428 chr6 161916506 161916774 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 445663 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 279-371 chr6 121571285 121571464 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 135728 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 338-14 chr1 91241312 91241521 + 2 NA Intergenic Intergenic 163421 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 416-10 chr1 104511827 104512117 + 2 NA Intergenic L1MA4|LINE|L1 438949 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 268-447 chrX 89042287 89042465 + 2 NA Intergenic L1M1|LINE|L1 295151 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 482-195 chr4 179399581 179399877 + 2 NA Intergenic L2|LINE|L2 -1491793 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 648-44 chr14 73333151 73333611 + 2 NA intron (NM_001005743, intron 4 of 12) L1MB5|LINE|L1 -87380 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 643-3 chr1 57497311 57497693 + 2 NA intron (NM_001353980, intron 4 of 5) L2b|LINE|L2 -72581 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 552-24 chr10 94688254 94688651 + 2 NA intron (NM_000772, intron 3 of 8) L1MA4A|LINE|L1 4723 NM_001128925 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 139-30 chr14 70140970 70141041 + 2 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -46103 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 295-482 chr8 120309293 120309501 + 2 NA intron (NM_021110, intron 36 of 47) intron (NM_021110, intron 36 of 47) 135753 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 233-92 chr14 53453909 53454088 + 2 NA Intergenic MIR|SINE|MIR 300644 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 501-265 chr8 101519798 101520159 + 2 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 27539 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 297-200 chr2 17054483 17054668 + 2 NA Intergenic Intergenic -388741 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 388-225 chr3 60519562 60519875 + 2 NA intron (NM_001320900, intron 6 of 9) Tigger2b_Pri|DNA|TcMar-Tigger 98152 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 318-365 chr3 98961168 98961479 + 2 NA Intergenic L2c|LINE|L2 -59628 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 290-78 chr11 58227339 58227546 + 2 NA TTS (NM_001004471) TTS (NM_001004471) 1476 NM_001004471 219960 Hs.553646 NM_001004471 ENSG00000180475 OR10Q1 OR11-233 olfactory receptor family 10 subfamily Q member 1 protein-coding 352-320 chr3 75305234 75305426 + 2 NA Intergenic L1ME1|LINE|L1 90854 NR_049831 100846999 NR_049831 ENSG00000266780 MIR4444-2 - microRNA 4444-2 ncRNA 332-272 chr2 186319279 186319452 + 2 NA Intergenic L1MA1|LINE|L1 -166895 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 386-341 chr8 18255308 18255547 + 2 NA Intergenic L1MB2|LINE|L1 33759 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 352-133 chr14 27105830 27106109 + 2 NA Intergenic Intergenic 197327 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 334-168 chr15 28859959 28860178 + 2 NA Intergenic Intergenic -11383 NM_001365371 728310 Hs.589351 NM_001365371 ENSG00000261649 GOLGA6L7 GOLGA6L7P golgin A6 family like 7 protein-coding 269-8 chr1 60595096 60595305 + 2 NA intron (NR_146508, intron 3 of 7) intron (NR_146508, intron 3 of 7) 27485 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 374-218 chr20 14020684 14020947 + 2 NA intron (NM_001351663, intron 2 of 17) L1MB4|LINE|L1 25299 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 233-73 chr12 17897821 17897948 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 192309 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 200-244 chr6 127079075 127079245 + 2 NA Intergenic L2|LINE|L2 -39511 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 348-56 chr10 61536967 61537193 + 2 NA Intergenic L1M5|LINE|L1 57039 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 309-18 chr1 165031811 165031993 + 2 NA Intergenic L1MB2|LINE|L1 -257261 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 409-180 chr21 19315658 19315967 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -556000 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 219-283 chr5 64681266 64681438 + 2 NA Intergenic MER97a|DNA|hAT-Tip100 -9151 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 295-456 chr7 150464042 150464314 + 2 NA intron (NM_175571, intron 1 of 4) intron (NM_175571, intron 1 of 4) 13548 NM_175571 155038 Hs.647121 NM_175571 ENSG00000171115 GIMAP8 IAN-9|IAN6|IAN9|IANT GTPase, IMAP family member 8 protein-coding 250-264 chr22 43876379 43876552 + 2 NA Intergenic Intergenic -13952 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 419-165 chr20 46732290 46732522 + 2 NA intron (NM_030777, intron 4 of 4) L2a|LINE|L2 22757 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 216-312 chr6 131579243 131579413 + 2 NA intron (NM_001369020, intron 3 of 5) intron (NM_001369020, intron 3 of 5) 6102 NM_001244438 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 190-167 chr7 124964579 124964719 + 2 NA intron (NR_125719, intron 2 of 7) intron (NR_125719, intron 2 of 7) -34666 NM_001042594 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 233-163 chr2 50590128 50590294 + 2 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 106051 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 322-330 chr3 89651642 89651856 + 2 NA Intergenic Intergenic 544128 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 366-259 chr21 40004269 40004591 + 2 NA Intergenic LTR16A2|LTR|ERVL 136992 NM_006198 5121 Hs.80296 NM_006198 ENSG00000183036 PCP4 PEP-19 Purkinje cell protein 4 protein-coding 167-14 chr1 195046981 195047112 + 2 NA Intergenic L1PB4|LINE|L1 1041669 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 397-280 chr6 70422169 70422504 + 2 NA intron (NM_001351607, intron 3 of 22) intron (NM_001351607, intron 3 of 22) -8378 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 522-194 chr4 100163906 100164342 + 2 NA Intergenic Intergenic -25909 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 541-217 chr7 46688866 46689308 + 2 NA non-coding (NR_134575, exon 3 of 3) non-coding (NR_134575, exon 3 of 3) 8035 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 282-11 chr1 105807525 105807761 + 2 NA Intergenic L1M1|LINE|L1 -188708 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 486-143 chr2 86252020 86252466 + 2 NA intron (NM_001371279, intron 4 of 8) intron (NM_001371279, intron 4 of 8) 52786 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 316-467 chr5 157184543 157184829 + 2 NA intron (NM_005546, intron 1 of 16) MIRc|SINE|MIR 3790 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 243-131 chr14 66413496 66413680 + 2 NA Intergenic MIRb|SINE|MIR -72783 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 419-3 chr1 39881982 39882301 + 2 NA intron (NM_017646, intron 1 of 10) MIRb|SINE|MIR 1363 NM_017646 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 328-261 chr2 57031519 57031793 + 2 NA Intergenic Intergenic -845886 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 291-221 chr2 82009640 82009897 + 2 NA Intergenic Intergenic -542822 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 472-226 chr4 46551833 46552264 + 2 NA Intergenic Intergenic -161920 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 339-619 chrX 6500498 6500720 + 2 NA Intergenic Intergenic 34509 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 312-187 chr17 52633231 52633500 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -228756 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 950-15 chr2 193551518 193552405 + 2 NA Intergenic L1MB7|LINE|L1 -792308 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 229 chr1 21025633 21025853 + 2 NA intron (NM_003760, intron 2 of 31) intron (NM_003760, intron 2 of 31) -37311 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 337-427 chr5 8964289 8964530 + 2 NA Intergenic Intergenic 89486 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 401-351 chrX 39559929 39560325 + 2 NA Intergenic LTR16C|LTR|ERVL -101089 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 383-45 chr11 10968168 10968450 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 110092 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 174-107 chr5 15162221 15162355 + 2 NA Intergenic L2a|LINE|L2 104272 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 343-231 chr2 41133548 41133771 + 2 NA Intergenic Intergenic -621224 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 438-34 chr10 62759283 62759657 + 2 NA Intergenic Intergenic -45250 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 376 chr1 10854760 10855027 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -58247 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 607-67 chr2 12886629 12887113 + 2 NA Intergenic Intergenic 120142 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 200-221 chr5 106653263 106653430 + 2 NA Intergenic L1PA7|LINE|L1 357668 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 228-341 chr8 99985225 99985398 + 2 NA intron (NM_015668, intron 21 of 27) MIR|SINE|MIR -19271 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 228-71 chr12 59418004 59418160 + 2 NA Intergenic L1ME3|LINE|L1 -177947 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 742-60 chr4 58946205 58946732 + 2 NA Intergenic L2a|LINE|L2 -37814 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 494-161 chr22 24786448 24786844 + 2 NA Intergenic Intergenic -11926 NR_045648 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 422-127 chr18 61941782 61942038 + 2 NA Intergenic Intergenic -48903 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 622-121 chr6 122294391 122294812 + 2 NA Intergenic Intergenic -104950 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 374-248 chr3 79495469 79495795 + 2 NA intron (NM_002941, intron 2 of 30) HAL1b|LINE|L1 -12255 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 297-473 chr8 89493902 89494113 + 2 NA Intergenic LTR1A1|LTR|ERV1 263704 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 121-14 chr16 6462992 6463086 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -310770 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 224-245 chr5 31173331 31173509 + 2 NA Intergenic Intergenic -20266 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 383-287 chr4 79846921 79847196 + 2 NA intron (NR_026555, intron 1 of 1) intron (NR_026555, intron 1 of 1) 19587 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 306-278 chr20 37948016 37948219 + 2 NA Intergenic L1MB8|LINE|L1 44990 NM_080607 128434 Hs.517029 NM_080607 ENSG00000132821 VSTM2L C20orf102|dJ1118M15.2 V-set and transmembrane domain containing 2 like protein-coding 451-165 chr4 109321118 109321507 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 18277 NR_160939 645078 Hs.518784 NM_001039778 ZCCHC23 - zinc finger CCHC-type containing 23 ncRNA 538-11 chr1 104583157 104583607 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 510359 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 139-92 chr8 127676437 127676561 + 2 NA Intergenic LTR16C|LTR|ERVL 57468 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 215-110 chr17 17047378 17047552 + 2 NA intron (NM_201274, intron 1 of 23) L1ME3G|LINE|L1 4705 NM_015134 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 601-65 chr19 29866704 29867150 + 2 NA Intergenic L1MEj|LINE|L1 54936 NM_001238 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 497-291 chr8 126272052 126272377 + 2 NA Intergenic L2|LINE|L2 -53281 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 140-11 chr11 14317195 14317282 + 2 NA intron (NM_001177314, intron 1 of 5) intron (NM_001177314, intron 1 of 5) 41247 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 313-335 chr3 44759403 44759670 + 2 NA intron (NM_001320334, intron 1 of 2).2 Tigger1|DNA|TcMar-Tigger 2083 NM_001320334 57456 Hs.744955 NM_020696 ENSG00000163807 KIAA1143 - KIAA1143 protein-coding 328-106 chr12 40875483 40875674 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -32779 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 159-11 chr10 47185781 47185875 + 2 NA Intergenic L1ME1|LINE|L1 -114369 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 270-32 chr10 42928993 42929132 + 2 NA Intergenic L1ME4b|LINE|L1 52445 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 328-374 chr3 165627416 165627615 + 2 NA Intergenic Intergenic 209908 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 488-288 chr9 29396042 29396461 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -182650 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 246-10 chr1 107560582 107560731 + 2 NA Intergenic L2|LINE|L2 127843 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 228-126 chr16 75894840 75894995 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -168427 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 232-166 chr2 48044713 48044873 + 2 NA Intergenic AluJr4|SINE|Alu -139000 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 373-165 chr18 31597657 31597881 + 2 NA intron (NM_000371, intron 3 of 3) intron (NM_000371, intron 3 of 3) 6002 NM_000371 7276 Hs.427202 NM_000371 ENSG00000118271 TTR ATTR|CTS|CTS1|HEL111|HsT2651|PALB|TBPA transthyretin protein-coding 273-260 chr20 43826315 43826484 + 2 NA Intergenic Intergenic -68319 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 307-259 chr2 185771470 185771696 + 2 NA intron (NM_173651, intron 13 of 22) MSTB-int|LTR|ERVL-MaLR 28567 NR_144453 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 203-207 chr6 130591815 130591971 + 2 NA Intergenic Intergenic 154776 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 344-472 chr7 154635463 154635652 + 2 NA intron (NM_001290252, intron 5 of 23) MLT1F1|LTR|ERVL-MaLR -292960 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 413-3 chr1 30298482 30298793 + 2 NA Intergenic L1M5|LINE|L1 -261025 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 294-168 chr17 69734264 69734439 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 140364 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 328-121 chr13 20753472 20753654 + 2 NA intron (NM_001318939, intron 2 of 4) L1MA4A|LINE|L1 20395 NM_174928 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 EEF1A lysine methyltransferase 1 protein-coding 327-339 chr3 116717364 116717630 + 2 NA TTS (NR_015391) TTS (NR_015391) 7709 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 346-415 chr6 23626797 23627026 + 2 NA Intergenic Intergenic -499304 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 356-211 chr18 64845564 64845866 + 2 NA Intergenic L1MC1|LINE|L1 -585660 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 325-225 chr17 67458020 67458243 + 2 NA intron (NM_181671, intron 1 of 9) LTR16B|LTR|ERVL -13358 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 273 chr1 3209511 3209757 + 2 NA intron (NM_022114, intron 2 of 16) intron (NM_022114, intron 2 of 16) 81659 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 223-123 chr17_KI270730v1_random 103402 103572 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 448-4 chr1 74330624 74330954 + 2 NA intron (NM_015978, intron 5 of 24) intron (NM_015978, intron 5 of 24) 95402 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 774-73 chr5 96126472 96127124 + 2 NA intron (NR_130776, intron 1 of 4) MIRb|SINE|MIR 47660 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 420-282 chr8 53103447 53103666 + 2 NA Intergenic Intergenic 148081 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 462-84 chr14 66871885 66872259 + 2 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -317368 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 367-58 chr10 105219476 105219672 + 2 NA intron (NM_014978, intron 19 of 26) MER68|LTR|ERVL -553358 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 299-378 chr5 104747254 104747438 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -352128 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 193-184 chr7 31888571 31888761 + 2 NA intron (NM_001322059, intron 3 of 17) L1MD2|LINE|L1 181741 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 181-117 chr5 20970315 20970423 + 2 NA Intergenic Intergenic -354834 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 194-47 chr13 42647985 42648156 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR 73918 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 266-350 chr5 149710798 149711028 + 2 NA Intergenic L1ME1|LINE|L1 -19397 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 241-165 chr19 37481829 37482012 + 2 NA intron (NM_001321994, intron 3 of 3) L1MEd|LINE|L1 12349 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 321-473 chr5 109235084 109235329 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 91163 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 262-281 chr3 96192560 96192744 + 2 NA Intergenic Intergenic -167312 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 313-494 chr7 46458844 46459104 + 2 NA Intergenic MER57B2|LTR|ERV1 238148 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 318-217 chr18 29734363 29734652 + 2 NA Intergenic L1PREC2|LINE|L1 -564403 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 246-195 chr2 98524681 98524835 + 2 NA intron (NM_001351428, intron 4 of 24) intron (NM_001351428, intron 4 of 24) 78748 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 197-5 chr1 44028314 44028497 + 2 NA intron (NM_001328630, intron 1 of 10) L2c|LINE|L2 2718 NM_001328629 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 224-180 chr21 22585361 22585583 + 2 NA Intergenic Intergenic 486855 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 348-500 chr7 104263809 104264008 + 2 NA Intergenic L1MC1|LINE|L1 -55861 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 280-455 chrX 82406899 82407166 + 2 NA Intergenic L1MA7|LINE|L1 -1101258 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 508-56 chr13 53191214 53191576 + 2 NA Intergenic Intergenic -39495 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 304-273 chr2 136125702 136125975 + 2 NA Intergenic Intergenic -7683 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 223-214 chr3 71829817 71830015 + 2 NA Intergenic Intergenic -44768 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 562-17 chr10 19200920 19201424 + 2 NA intron (NM_001142308, intron 14 of 39) (TA)n|Simple_repeat|Simple_repeat 152371 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 228-277 chr5 135646098 135646313 + 2 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) 7730 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 386-207 chr20 43179516 43179751 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 10273 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 213-52 chr11 34375722 34375903 + 2 NA Intergenic L1M4c|LINE|L1 -17802 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 294-145 chr15 88725982 88726200 + 2 NA Intergenic Intergenic -77345 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 542-165 chr5 61753775 61754271 + 2 NA Intergenic Intergenic -18325 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 378-431 chr8 59702325 59702647 + 2 NA Intergenic Intergenic 578914 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 534-213 chr6 46747230 46747725 + 2 NA intron (NM_001162435, intron 1 of 4) L1MB7|LINE|L1 560 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 236-130 chr15 100055872 100056100 + 2 NA intron (NM_139057, intron 15 of 21) intron (NM_139057, intron 15 of 21) 248963 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 245-207 chr2 171245012 171245195 + 2 NA Intergenic LTR26E|LTR|ERV1 -13810 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 547-9 chr1 188007498 188007960 + 2 NA Intergenic L1MC3|LINE|L1 564101 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 430-53 chr11 54810380 54810645 + 2 NA Intergenic ALR/Alpha|Satellite|centr 103680 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 707-92 chr7 4383106 4383753 + 2 NA Intergenic Intergenic -248592 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 321-34 chr1 223360701 223361003 + 2 NA intron (NM_017982, intron 2 of 8) intron (NM_017982, intron 2 of 8) 3324 NM_001037175 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 510-71 chr14 48886854 48887261 + 2 NA Intergenic Intergenic 699323 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 588-47 chr16 25562789 25563298 + 2 NA Intergenic L1ME4a|LINE|L1 -128916 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 319-544 chr8 116161290 116161530 + 2 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 163649 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 215-306 chr7 140983183 140983333 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 31421 NM_016071 51650 Hs.416207 NM_016071 ENSG00000090263 MRPS33 CGI-139|MRP-S33|PTD003|S33mt mitochondrial ribosomal protein S33 protein-coding 452-122 chr2 52172870 52173259 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -197584 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 958-21 chr6 41393769 41394348 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 58450 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 308-466 chr7 64728785 64728983 + 2 NA Intergenic L1PB1|LINE|L1 49820 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 338-298 chr20 40276760 40277077 + 2 NA Intergenic MIRb|SINE|MIR 272457 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 334-88 chr11 46725440 46725649 + 2 NA intron (NM_000506, intron 6 of 13) intron (NM_000506, intron 6 of 13) 6331 NM_001311257 2147 Hs.655207 NM_000506 ENSG00000180210 F2 PT|RPRGL2|THPH1 coagulation factor II, thrombin protein-coding 345-64 chr10 59273601 59273876 + 2 NA intron (NM_001347852, intron 6 of 12) intron (NM_001347852, intron 6 of 12) 88811 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 372-305 chr22 44249700 44249978 + 2 NA intron (NM_001099294, intron 4 of 4) L1M5|LINE|L1 63112 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 212-292 chr7 7670012 7670150 + 2 NA intron (NM_002947, intron 4 of 7) intron (NM_002947, intron 4 of 7) 29329 NM_001302348 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 221-137 chr2 55914451 55914637 + 2 NA intron (NM_001039349, intron 4 of 10) intron (NM_001039349, intron 4 of 10) 9238 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 341-220 chr19 36759757 36759996 + 2 NA intron (NM_001267779, intron 3 of 3) intron (NM_001267779, intron 3 of 3) 12931 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 317-544 chrX 51135292 51135556 + 2 NA intron (NR_110382, intron 1 of 8) ERV3-16A3_I-int|LTR|ERVL 35997 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 143-66 chr5 24411757 24411834 + 2 NA Intergenic Intergenic 233183 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 325-529 chr8 21007324 21007625 + 2 NA Intergenic L1MD2|LINE|L1 33488 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 297-323 chr4 45978683 45978941 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie 145242 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 244-250 chr4 21485374 21485553 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -20705 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 413-215 chr4 37128537 37128841 + 2 NA Intergenic L1MEc|LINE|L1 113302 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 514-45 chr11 15949286 15949648 + 2 NA Intergenic Intergenic 20154 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 246-17 chr1 170624123 170624360 + 2 NA Intergenic L2|LINE|L2 -39890 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 291-323 chr4 85896629 85896879 + 2 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -33262 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 283-228 chr2 50352900 50353147 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -5267 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 427-103 chr19 29039529 29039798 + 2 NA Intergenic LTR16C|LTR|ERVL 37108 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 323-239 chr2 43929217 43929513 + 2 NA intron (NM_133259, intron 25 of 37) Tigger2b_Pri|DNA|TcMar-Tigger 66624 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 687-77 chr3 112341437 112341925 + 2 NA intron (NR_158642, intron 3 of 6) intron (NR_158642, intron 3 of 6) 8525 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 362-382 chr6 130694549 130694839 + 2 NA Intergenic Intergenic -132711 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 236-174 chr2 81413897 81414099 + 2 NA Intergenic Intergenic 52948 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 342-403 chr5 63085019 63085316 + 2 NA Intergenic Intergenic 506348 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 251-191 chr2 178925605 178925797 + 2 NA intron (NM_001316745, intron 6 of 11) intron (NM_001316745, intron 6 of 11) -118278 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 314-463 chr5 63898857 63899089 + 2 NA Intergenic L1MDa|LINE|L1 63319 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 305-449 chr5 123915228 123915464 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 369929 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 569-24 chr10 54122921 54123435 + 2 NA intron (NM_001354411, intron 16 of 34) L1PA16|LINE|L1 -363052 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 506-95 chr15 57797279 57797621 + 2 NA Intergenic Intergenic 90736 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 267-229 chr20 46633717 46633902 + 2 NA intron (NM_001193340, intron 2 of 12) MIR|SINE|MIR 17650 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 689-54 chr2 161788081 161788458 + 2 NA intron (NM_001354453, intron 2 of 24) L1PA17|LINE|L1 163853 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 349-85 chr10 118456664 118456966 + 2 NA Intergenic Intergenic 99707 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 343-199 chr17 72800979 72801227 + 2 NA intron (NM_001352692, intron 6 of 9) L1MB8|LINE|L1 -160631 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 320-335 chr3 20450910 20451151 + 2 NA Intergenic MER41-int|LTR|ERV1 108562 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 571-83 chr2 147077436 147077972 + 2 NA Intergenic L1MA4|LINE|L1 490647 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 219-120 chr15 91782406 91782563 + 2 NA Intergenic MIR|SINE|MIR -71224 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 311-481 chr7 113953782 113954081 + 2 NA Intergenic L1PA13|LINE|L1 -34922 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 319-60 chr10 56666784 56667059 + 2 NA Intergenic L1MB5|LINE|L1 -305648 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 230-75 chr12 16181371 16181546 + 2 NA Intergenic AluYc|SINE|Alu 96227 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 354-252 chr2 235399483 235399802 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -94401 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 305-340 chr3 18156597 18156798 + 2 NA intron (NR_161333, intron 4 of 4) L2a|LINE|L2 194145 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 461-270 chr8 99978289 99978600 + 2 NA intron (NM_015668, intron 22 of 27) intron (NM_015668, intron 22 of 27) -26138 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 239-297 chr5 6307146 6307339 + 2 NA Intergenic Intergenic 30050 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 347-304 chr3 63431619 63431821 + 2 NA intron (NR_046677, intron 2 of 4) intron (NR_046677, intron 2 of 4) -11592 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 229-128 chr15 91683047 91683227 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -170571 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 385-364 chr7 109297866 109298118 + 2 NA Intergenic L1MC3|LINE|L1 -413405 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 519-244 chr8 137915239 137915645 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 168103 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 367-391 chr6 63137280 63137566 + 2 NA Intergenic HERVL-int|LTR|ERVL 182554 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 454-228 chr4 55204463 55204784 + 2 NA Intergenic L1MEg|LINE|L1 -79028 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 276-363 chr5 22780788 22780944 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 72478 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 333-567 chr8 75948837 75949093 + 2 NA Intergenic HAL1|LINE|L1 408997 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 187-6 chr1 50238224 50238376 + 2 NA Intergenic MIRb|SINE|MIR 128467 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 221-286 chr7 70849223 70849368 + 2 NA Intergenic HERVIP10F-int|LTR|ERV1 -282849 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 1095-7 chr4 42946145 42946948 + 2 NA intron (NM_001080476, intron 1 of 3) MLT1A0|LTR|ERVL-MaLR 53280 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 270-281 chr4 138812237 138812489 + 2 NA Intergenic L1MB8|LINE|L1 200283 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 320-360 chr3 122806226 122806493 + 2 NA intron (NM_032839, intron 1 of 8) intron (NM_032839, intron 1 of 8) 11290 NM_032839 84925 Hs.477346 NM_032839 ENSG00000138463 SLC49A4 DIRC2|RCC4 solute carrier family 49 member 4 protein-coding 265-218 chr20 55218485 55218677 + 2 NA Intergenic L1M4|LINE|L1 -204462 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 346-211 chr18 65714246 65714524 + 2 NA Intergenic MER33|DNA|hAT-Charlie -35867 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 391-167 chr2 49187155 49187409 + 2 NA Intergenic L2a|LINE|L2 -32755 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 554-108 chr19 56497784 56498219 + 2 NA Intergenic Intergenic -9854 NM_020813 57573 Hs.230188 NM_020813 ENSG00000196263 ZNF471 ERP1|Z1971 zinc finger protein 471 protein-coding 376-266 chr4 19855189 19855401 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -396610 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 222-258 chr3 191456980 191457153 + 2 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) -4097 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 520-24 chr1 234047877 234048353 + 2 NA intron (NM_173508, intron 2 of 7) MLT1B-int|LTR|ERVL-MaLR 143439 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 320-207 chr17 55879145 55879371 + 2 NA Intergenic L1MC|LINE|L1 128153 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 710-25 chr12 132974848 132975373 + 2 NA Intergenic L1M1|LINE|L1 -11257 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 317-3 chr1 5336611 5336812 + 2 NA Intergenic Intergenic 526030 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 483-181 chr3 183662484 183662775 + 2 NA intron (NM_001349428, intron 4 of 8) intron (NM_001349428, intron 4 of 8) 27006 NM_001349423 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 235-13 chr1 100580156 100580383 + 2 NA Intergenic L1MC2|LINE|L1 42130 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 196-125 chr2 58895059 58895220 + 2 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -322569 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 511-287 chrX 65789439 65789753 + 2 NA Intergenic Intergenic 121942 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 242-250 chr3 178372996 178373156 + 2 NA Intergenic MIR|SINE|MIR -46125 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 502-125 chr19 56554484 56554886 + 2 NA exon (NM_020828, exon 8 of 8) exon (NM_020828, exon 8 of 8) -12783 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 372-214 chr2 18722921 18723192 + 2 NA Intergenic Intergenic -133476 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 275-320 chr6 146635495 146635703 + 2 NA intron (NM_024694, intron 2 of 35) intron (NM_024694, intron 2 of 35) 36627 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 303-279 chr3 30224779 30225012 + 2 NA Intergenic Intergenic -290739 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 331-124 chr12 88207607 88207886 + 2 NA Intergenic L1MEg2|LINE|L1 65439 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 353-356 chr4 19649760 19650053 + 2 NA Intergenic Intergenic -601999 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 435-259 chr8 134945310 134945549 + 2 NA Intergenic L2a|LINE|L2 95494 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 416-149 chr18 57948808 57949163 + 2 NA Intergenic Intergenic -95241 NM_001144967 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 709-44 chr2 153767001 153767654 + 2 NA Intergenic L1PB4|LINE|L1 -104595 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 346-333 chr3 178963914 178964170 + 2 NA Intergenic LTR48|LTR|ERV1 -103637 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 123-51 chr6 53534771 53534844 + 2 NA intron (NM_001498, intron 1 of 15) L1ME1|LINE|L1 10294 NM_001498 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 218-98 chr14 77335596 77335785 + 2 NA 3' UTR (NM_213601, exon 6 of 6) 3' UTR (NM_213601, exon 6 of 6) 11151 NM_001363703 2954 Hs.655292 NM_001513 ENSG00000100577 GSTZ1 GSTZ1-1|MAAI|MAAID|MAI glutathione S-transferase zeta 1 protein-coding 338-335 chr3 56813992 56814215 + 2 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -12154 NM_019555 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 528-197 chr5 18139368 18139757 + 2 NA Intergenic Intergenic 332288 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 174-10 chr1 213667151 213667273 + 2 NA Intergenic Intergenic -257537 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 268-334 chr6 18764741 18764989 + 2 NA Intergenic Intergenic 193081 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 519-56 chr13 92996161 92996517 + 2 NA Intergenic MLT2A2|LTR|ERVL -49002 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 270-244 chr3 101242880 101243099 + 2 NA intron (NM_016247, intron 13 of 18) intron (NM_016247, intron 13 of 18) 77586 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 264-421 chr8 102141618 102141766 + 2 NA Intergenic L1MD|LINE|L1 16260 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 463-178 chr22 48975918 48976236 + 2 NA Intergenic Intergenic 109307 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 326-568 chr9 28440471 28440707 + 2 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 278716 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 309-523 chr7 116013101 116013300 + 2 NA intron (NM_012252, intron 1 of 7) intron (NM_012252, intron 1 of 7) 17563 NM_001018058 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 331-6 chr1 76491963 76492285 + 2 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 287143 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 301-287 chr3 117178733 117178937 + 2 NA Intergenic MIRb|SINE|MIR 257404 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 309-273 chr2 141026499 141026799 + 2 NA intron (NM_018557, intron 11 of 90) intron (NM_018557, intron 11 of 90) -439964 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 280-305 chr5 4048294 4048482 + 2 NA Intergenic LTR26C|LTR|ERV1 452556 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 313-372 chr3 197157918 197158106 + 2 NA intron (NM_001366204, intron 5 of 24) L1M4c|LINE|L1 25860 NR_158767 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 279-345 chr5 147518897 147519070 + 2 NA Intergenic Intergenic -8915 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 177-71 chr2 59681897 59682053 + 2 NA Intergenic L1ME1|LINE|L1 464267 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 311-236 chr2 12956143 12956368 + 2 NA Intergenic Intergenic 50758 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 559-200 chr9 86194462 86194878 + 2 NA Intergenic Intergenic 61363 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 255-6 chr1 82144410 82144637 + 2 NA Intergenic Intergenic 342070 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 273-193 chr18 78463838 78464101 + 2 NA Intergenic L1MA5|LINE|L1 -470242 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 346-421 chr6 54464272 54464574 + 2 NA Intergenic Intergenic 155982 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 367-376 chr5 160577526 160577779 + 2 NA intron (NM_001366652, intron 23 of 24) L1ME3C|LINE|L1 92300 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 361-470 chr8 142307515 142307741 + 2 NA intron (NM_001366903, intron 9 of 9) MER2|DNA|TcMar-Tigger 95554 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 338-546 chr8 103554062 103554248 + 2 NA intron (NM_001348497, intron 1 of 22) L1PA15|LINE|L1 -52245 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 320-241 chr19 43962148 43962365 + 2 NA intron (NM_013359, intron 2 of 5) L1MB8|LINE|L1 11011 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 695-75 chr5 7006471 7006949 + 2 NA Intergenic Intergenic -178789 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 337-430 chr5 11794537 11794835 + 2 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 109760 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 274-353 chr7 48407674 48407943 + 2 NA intron (NM_152701, intron 39 of 61) AluSx|SINE|Alu 236350 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 264-129 chr14 54113688 54113847 + 2 NA Intergenic HAL1|LINE|L1 -156876 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 334-110 chr12 57931055 57931374 + 2 NA TTS (NR_038269) TTS (NR_038269) 4950 NR_038269 100506844 Hs.90286 NR_038269 GIHCG - GIHCG inhibitor of miR-200b/200a/429 expression ncRNA 130-33 chr18 63442726 63442800 + 2 NA Intergenic Intergenic -20287 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 348-14 chr1 102849446 102849737 + 2 NA Intergenic Intergenic 258905 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 200-182 chr3 162006829 162006979 + 2 NA Intergenic Intergenic 510096 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 511-59 chr13 78402622 78403013 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -193305 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 459-91 chr15 27323403 27323774 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -162269 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 524-108 chr2 24897818 24898179 + 2 NA intron (NM_001320613, intron 2 of 21) intron (NM_001320613, intron 2 of 21) 22239 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 242-79 chr12 51059639 51059789 + 2 NA non-coding (NR_147116, exon 4 of 4) non-coding (NR_147116, exon 4 of 4) 11387 NM_001351333 25875 Hs.655272 NM_015416 ENSG00000050426 LETMD1 1110019O13Rik|HCCR|HCCR-1|HCCR-2|HCCR1|HCCR2|HCRR-2|SLC55A3 LETM1 domain containing 1 protein-coding 202-102 chr18 70646264 70646409 + 2 NA intron (NR_160904, intron 1 of 2) intron (NR_160904, intron 1 of 2) 4618 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 369-133 chr15 57421889 57422233 + 2 NA intron (NM_001252335, intron 2 of 19) intron (NM_001252335, intron 2 of 19) 45556 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 428-194 chr3 156800973 156801398 + 2 NA intron (NR_038387, intron 1 of 2) AluSz|SINE|Alu 10836 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 305-387 chr4 62014813 62014979 + 2 NA intron (NM_001371343, intron 20 of 23) intron (NM_001371343, intron 20 of 23) 146869 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 443-180 chr20 43073031 43073393 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 104469 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 325-367 chr3 177569432 177569653 + 2 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 127621 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 338-544 chr8 94660055 94660259 + 2 NA intron (NM_017697, intron 4 of 15) Tigger1|DNA|TcMar-Tigger 18983 NM_001122826 54845 Hs.487471 NM_017697 ENSG00000104413 ESRP1 DFNB109|RBM35A|RMB35A epithelial splicing regulatory protein 1 protein-coding 313-277 chr2 130942518 130942802 + 2 NA intron (NM_001367493, intron 3 of 13) intron (NM_001367493, intron 3 of 13) 105746 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 242-146 chr18 10345990 10346170 + 2 NA Intergenic Intergenic 68290 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 284-143 chr15 97475187 97475372 + 2 NA intron (NR_120324, intron 2 of 4) L1ME2|LINE|L1 46532 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 415-136 chr2 129092223 129092617 + 2 NA Intergenic LTR29|LTR|ERV1 181471 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 198-25 chr10 61720458 61720622 + 2 NA intron (NM_173554, intron 4 of 6) HAL1b|LINE|L1 57579 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 144-41 chr2 24537764 24537895 + 2 NA intron (NM_001362952, intron 1 of 23) L1MA9|LINE|L1 45952 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 500-3 chr1 49331092 49331549 + 2 NA intron (NR_136623, intron 2 of 12) L1PA12|LINE|L1 73909 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 217-10 chr1 68817144 68817300 + 2 NA Intergenic MER57B1|LTR|ERV1 -238676 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 206-265 chr8 83526327 83526475 + 2 NA Intergenic Intergenic 122643 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 252-367 chr6 56701430 56701647 + 2 NA intron (NM_001144770, intron 5 of 94) intron (NM_001144770, intron 5 of 94) -58649 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 262-195 chr2 24448111 24448279 + 2 NA Intergenic L1MEd|LINE|L1 -43059 NM_001362950 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 276-489 chrX 66355703 66355931 + 2 NA Intergenic L1MB3|LINE|L1 188067 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 291-395 chr6 155493359 155493625 + 2 NA Intergenic Intergenic -21352 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 338-248 chr2 24617246 24617514 + 2 NA intron (NM_001362950, intron 3 of 23) L2|LINE|L2 32903 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 694-117 chr7 10769255 10769696 + 2 NA intron (NR_147499, intron 1 of 2) MamTip3|DNA|hAT-Tip100 10469 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 339-292 chr2 189361129 189361303 + 2 NA Intergenic L1M1|LINE|L1 -80217 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 368-361 chr5 59166967 59167315 + 2 NA intron (NM_001364602, intron 5 of 5) MIRb|SINE|MIR 108974 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 294-394 chr5 155806272 155806547 + 2 NA Intergenic AluSg4|SINE|Alu -520348 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 449-192 chr4 81528299 81528642 + 2 NA Intergenic MER52A|LTR|ERV1 -56563 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 377-124 chr14 60552085 60552289 + 2 NA Intergenic L1MCa|LINE|L1 43041 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 357-399 chr6 159356515 159356724 + 2 NA Intergenic Intergenic -26912 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 407-200 chr3 97382913 97383206 + 2 NA intron (NM_001080448, intron 5 of 17) intron (NM_001080448, intron 5 of 17) -56548 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 422-302 chr8 116250168 116250517 + 2 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 74717 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 336-193 chr16 26688808 26689070 + 2 NA Intergenic Intergenic -377988 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 227-55 chr10 126824122 126824275 + 2 NA Intergenic L1MB8|LINE|L1 -81211 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 437-171 chr3 54065970 54066205 + 2 NA Intergenic Intergenic -56465 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 387-378 chr8 138139250 138139581 + 2 NA intron (NM_015912, intron 17 of 19) intron (NM_015912, intron 17 of 19) -55870 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 358-105 chr13 55098989 55099213 + 2 NA Intergenic L1MCa|LINE|L1 -75353 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 265-147 chr18 7765913 7766086 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 198683 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 350-236 chr2 114308130 114308342 + 2 NA Intergenic L1M1|LINE|L1 -134405 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 484-82 chr16 24582166 24582516 + 2 NA Intergenic HAL1|LINE|L1 -27864 NM_001351850 27327 Hs.655057 NM_014494 ENSG00000090905 TNRC6A CAGH26|FAME6|GW1|GW182|TNRC6 trinucleotide repeat containing adaptor 6A protein-coding 364-311 chr4 114696038 114696299 + 2 NA Intergenic Intergenic 39409 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 158-98 chr5 172570507 172570658 + 2 NA Intergenic Intergenic -11568 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 428-231 chr5 52052910 52053208 + 2 NA Intergenic L1MD2|LINE|L1 45028 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 223-324 chr7 93006095 93006276 + 2 NA Intergenic Intergenic 111794 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 286-136 chr15 69119298 69119530 + 2 NA Intergenic MIRb|SINE|MIR 38564 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 295-180 chr18 4580095 4580373 + 2 NA Intergenic Intergenic -124927 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 496-35 chr10 58526171 58526546 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 13486 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 327-476 chr8 4012105 4012379 + 2 NA intron (NM_033225, intron 4 of 69) L2a|LINE|L2 982672 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 139-20 chr12 17494692 17494800 + 2 NA Intergenic Intergenic 94332 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 212-181 chr2 216743209 216743390 + 2 NA Intergenic Intergenic -47750 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 203-162 chr4 31566350 31566525 + 2 NA Intergenic L1MA4|LINE|L1 59893 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 528-250 chr8 86264814 86265206 + 2 NA Intergenic LTR8B|LTR|ERV1 -34629 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 233-20 chr1 200116681 200116843 + 2 NA intron (NM_205860, intron 6 of 7) intron (NM_205860, intron 6 of 7) 73937 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 148-95 chr8 133737029 133737136 + 2 NA Intergenic L1ME4a|LINE|L1 40270 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 516-91 chr16 9890032 9890428 + 2 NA intron (NM_001134408, intron 4 of 13) intron (NM_001134408, intron 4 of 13) 291837 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 397-335 chr8 72587722 72587993 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 50632 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 363-285 chr3 62768767 62769042 + 2 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 106512 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 252-396 chr7 39040686 39040874 + 2 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -27213 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 230-19 chr1 154105731 154105939 + 2 NA intron (NM_001159484, intron 12 of 37) L1M1|LINE|L1 -1243 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 194 chr1 5333372 5333507 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 529302 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 498-66 chr12 41334842 41335219 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -102709 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 368-237 chr2 112846538 112846742 + 2 NA Intergenic Intergenic -9861 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 442-186 chr3 59686326 59686606 + 2 NA Intergenic Intergenic -27969 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 364-457 chr8 131019875 131020230 + 2 NA intron (NM_001115, intron 1 of 17) L2a|LINE|L2 20857 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 286-67 chr11 47966091 47966310 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -14359 NM_002843 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 265-177 chr2 58832738 58832934 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 312083 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 256-122 chr14 54136551 54136705 + 2 NA Intergenic L3b|LINE|CR1 -179737 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 486-218 chr4 32224471 32224821 + 2 NA Intergenic MER34A|LTR|ERV1 -126392 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 466-291 chr9 78162206 78162531 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -73707 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 268-70 chr11 92719066 92719305 + 2 NA intron (NM_001008781, intron 3 of 24) L4_C_Mam|LINE|RTE-X 196443 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 368-375 chr5 141381264 141381530 + 2 NA intron (NM_018919, intron 1 of 3) intron (NM_018919, intron 1 of 3) -1345 NM_032087 56108 Hs.368160 NM_018920 ENSG00000253537 PCDHGA7 PCDH-GAMMA-A7 protocadherin gamma subfamily A, 7 protein-coding 208-220 chr5 156625467 156625645 + 2 NA intron (NM_001128209, intron 5 of 7) Charlie4a|DNA|hAT-Charlie -224739 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 194-127 chr3 109659448 109659587 + 2 NA Intergenic Intergenic 56689 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 366-487 chrX 93162175 93162512 + 2 NA Intergenic Intergenic -337440 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 283-52 chr10 53647679 53647841 + 2 NA Intergenic Intergenic -838470 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 237-100 chr14 48619674 48619883 + 2 NA Intergenic Intergenic -824764 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 425-195 chr3 185572894 185573215 + 2 NA Intergenic AluSq2|SINE|Alu -13241 NM_021627 59343 Hs.401388 NM_021627 ENSG00000163904 SENP2 AXAM2|SMT3IP2 SUMO specific peptidase 2 protein-coding 230-328 chr6 148906318 148906498 + 2 NA intron (NM_005715, intron 2 of 7) intron (NM_005715, intron 2 of 7) 58276 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 390-389 chr8 110611728 110612015 + 2 NA Intergenic Intergenic 415562 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 372-132 chr13 83987130 83987478 + 2 NA Intergenic L2|LINE|L2 -104830 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 219-227 chr3 30093815 30093957 + 2 NA Intergenic MER61D|LTR|ERV1 -159730 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 171-78 chr3 40154364 40154464 + 2 NA intron (NM_001284424, intron 4 of 15) L2a|LINE|L2 54403 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 321-593 chr9 28257734 28257902 + 2 NA intron (NM_152570, intron 5 of 6) Mam_R4|LINE|Dong-R4 461487 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 173-141 chr8 88650725 88650882 + 2 NA Intergenic L1MCa|LINE|L1 -323320 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 187-165 chr7 110174865 110175024 + 2 NA Intergenic Intergenic -214731 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 259-383 chr8 60951635 60951809 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 16026 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 257-297 chr4 56358163 56358414 + 2 NA intron (NM_001286672, intron 5 of 10) L1ME1|LINE|L1 29203 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 370-225 chr2 50035010 50035327 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -60965 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 318-528 chr8 9982032 9982229 + 2 NA Intergenic LTR67B|LTR|ERVL -72162 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 153-21 chr11 124474151 124474248 + 2 NA Intergenic L1MCa|LINE|L1 -33114 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 235-270 chr4 141937309 141937501 + 2 NA Intergenic Intergenic 300822 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 326-82 chr10 111191600 111191784 + 2 NA Intergenic L1ME1|LINE|L1 77401 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 188-207 chr8 114069650 114069778 + 2 NA Intergenic Intergenic -632775 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 279-77 chr12 16812235 16812489 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -176385 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 679-5 chr1 69103402 69103916 + 2 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 47761 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 612-117 chr5 125935938 125936491 + 2 NA Intergenic Intergenic -243363 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 368-146 chr14 66309418 66309658 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -176833 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 529-116 chr2 161687617 161688137 + 2 NA intron (NM_001354451, intron 1 of 25) THE1D|LTR|ERVL-MaLR 63461 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 178-44 chr14 51194909 51195032 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -45277 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 221-79 chr14 48993130 48993316 + 2 NA Intergenic Intergenic 593157 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 234-9 chr1 82371707 82371870 + 2 NA Intergenic MamRep1527|LTR|LTR -531395 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 531-250 chr8 132269084 132269469 + 2 NA intron (NM_004519, intron 1 of 14) L1MC1|LINE|L1 -164011 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 435-25 chr10 12018470 12018738 + 2 NA intron (NM_080599, intron 3 of 21) AluJb|SINE|Alu 24205 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 279-440 chr9 88558203 88558384 + 2 NA intron (NM_145283, intron 1 of 2) MER21B|LTR|ERVL 23115 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 293-147 chr16 76029111 76029289 + 2 NA Intergenic L1ME2|LINE|L1 -248201 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 721-76 chr6 165802866 165803335 + 2 NA Intergenic Intergenic -140820 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 363-165 chr16 57551174 57551380 + 2 NA intron (NM_153837, intron 1 of 11) Tigger1|DNA|TcMar-Tigger 8634 NM_001318481 221188 Hs.187884 NM_153837 ENSG00000159618 ADGRG5 GPR114|PGR27 adhesion G protein-coupled receptor G5 protein-coding 237-396 chr8 134537970 134538187 + 2 NA intron (NM_020863, intron 11 of 15) intron (NM_020863, intron 11 of 15) -59993 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 354-364 chr5 23528909 23529153 + 2 NA TTS (NM_001310214) TTS (NM_001310214) 21376 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 220-364 chr8 79493512 79493635 + 2 NA Intergenic Intergenic -117544 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 255-428 chr8 102426461 102426708 + 2 NA Intergenic AluSx1|SINE|Alu -13884 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 353-354 chr4 16838438 16838631 + 2 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 60111 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 653-106 chr6 115330184 115330588 + 2 NA Intergenic L2a|LINE|L2 313449 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 557-155 chr5 26266321 26266707 + 2 NA Intergenic L1PA16|LINE|L1 772072 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 346-236 chr2 51672208 51672546 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 639776 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 222-94 chr12 130058432 130058571 + 2 NA Intergenic Intergenic -12834 NR_146538 105370078 NR_146538 LINC02419 - long intergenic non-protein coding RNA 2419 ncRNA 283-417 chr7 48913148 48913321 + 2 NA Intergenic L1MCa|LINE|L1 -11313 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 244-252 chr4 32103169 32103334 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -80829 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 405-133 chr2 46053317 46053670 + 2 NA intron (NM_005400, intron 10 of 14) L1MB3|LINE|L1 -243914 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 291-106 chr12 112766531 112766719 + 2 NA intron (NM_001347952, intron 1 of 21) LTR16C|LTR|ERVL -24913 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 254-40 chr10 64633320 64633542 + 2 NA Intergenic Intergenic -192097 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 467-282 chr8 98836129 98836510 + 2 NA intron (NM_001256312, intron 3 of 12) MLT1A0|LTR|ERVL-MaLR -10631 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 773-49 chr8 84438451 84438939 + 2 NA intron (NM_001354308, intron 2 of 9) L1PA16|LINE|L1 23211 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 242-274 chr4 96460846 96461080 + 2 NA intron (NR_147149, intron 2 of 3) L2|LINE|L2 150260 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 248-63 chr11 46925339 46925493 + 2 NA Intergenic L2a|LINE|L2 -6866 NM_002334 4038 Hs.4930 NM_002334 ENSG00000134569 LRP4 CLSS|CMS17|LRP-4|LRP10|MEGF7|SOST2 LDL receptor related protein 4 protein-coding 528-189 chr4 163267880 163268254 + 2 NA Intergenic Intergenic 64529 NM_000909 4886 Hs.519057 NM_000909 ENSG00000164128 NPY1R NPY1-R|NPYR neuropeptide Y receptor Y1 protein-coding 351-53 chr10 118139276 118139575 + 2 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -92484 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 227-166 chr2 59534740 59534922 + 2 NA Intergenic Intergenic 317123 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 267-459 chrX 67100740 67100921 + 2 NA Intergenic Intergenic -443191 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 365-129 chr15 25261646 25261933 + 2 NA intron (NR_146177, intron 139 of 147) intron (NR_146177, intron 139 of 147) -2738 NR_003498 100036566 NR_003498 SNORD115-45 HBII-52-45|SNORD115-48 small nucleolar RNA, C/D box 115-45 snoRNA 446-222 chr4 105305828 105306222 + 2 NA intron (NR_126420, intron 2 of 5) intron (NR_126420, intron 2 of 5) 46856 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 309-84 chr11 70856582 70856772 + 2 NA intron (NM_012309, intron 10 of 24) MIRb|SINE|MIR -6113 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 240-135 chr14 54292308 54292449 + 2 NA Intergenic Intergenic -104490 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 426-300 chr8 102799289 102799511 + 2 NA Intergenic MER21C|LTR|ERVL -7422 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 1080-3 chr10 111716329 111717129 + 2 NA Intergenic L1MCa|LINE|L1 467036 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 323-471 chr6 125089966 125090181 + 2 NA non-coding (NR_104440, exon 7 of 7) non-coding (NR_104440, exon 7 of 7) -63700 NM_001003396 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 292-338 chr5 12394923 12395142 + 2 NA Intergenic Intergenic -179825 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 356-293 chr20 56032449 56032759 + 2 NA Intergenic LTR76|LTR|ERV1 -27085 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 575-112 chr22 46823031 46823321 + 2 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 49249 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 322-440 chr5 141281225 141281409 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 22732 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 339-31 chr1 165041244 165041474 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -266718 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 390-201 chr2 196510402 196510749 + 2 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 82408 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 366-34 chr1 227663940 227664130 + 2 NA intron (NR_102302, intron 5 of 5) intron (NR_102302, intron 5 of 5) 33672 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 234-265 chr4 30398574 30398761 + 2 NA Intergenic Intergenic -321702 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 575-130 chr3 185929933 185930473 + 2 NA intron (NM_004593, intron 1 of 8) intron (NM_004593, intron 1 of 8) 7811 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 575-61 chr15 81614680 81615124 + 2 NA Intergenic AluJb|SINE|Alu -240689 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 641-16 chr11 18531368 18531849 + 2 NA 3' UTR (NM_001261385, exon 11 of 11) 3' UTR (NM_001261385, exon 11 of 11) -4666 NM_006292 7251 Hs.523512 NM_006292 ENSG00000074319 TSG101 TSG10|VPS23 tumor susceptibility 101 protein-coding 722-40 chr18 3730708 3731364 + 2 NA intron (NM_001242762, intron 3 of 9) L1MC4|LINE|L1 114322 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 785-4 chr1 75061542 75062038 + 2 NA Intergenic L1MA3|LINE|L1 -66644 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 275-301 chr5 145141411 145141664 + 2 NA Intergenic L1MA1|LINE|L1 693805 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 123-20 chr16 28161796 28161906 + 2 NA intron (NM_001270940, intron 7 of 24) intron (NM_001270940, intron 7 of 24) 50114 NM_015171 23214 Hs.460468 NM_015171 ENSG00000169180 XPO6 EXP6|RANBP20 exportin 6 protein-coding 342-389 chr5 29873523 29873715 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -6941 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 531-77 chr16 7462319 7462819 + 2 NA intron (NM_145893, intron 1 of 13) MLT1E2|LTR|ERVL-MaLR 129724 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 280-81 chr12 7325750 7325912 + 2 NA intron (NM_001080454, intron 11 of 12) intron (NM_001080454, intron 11 of 12) 21499 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 524-197 chr5 46147137 46147535 + 2 NA Intergenic ALR/Alpha|Satellite|centr -450956 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 440-261 chr9 19773291 19773650 + 2 NA intron (NM_020344, intron 1 of 9) intron (NM_020344, intron 1 of 9) 13549 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 386-37 chr10 51539323 51539595 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 160136 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 155-16 chr1 220924826 220924912 + 2 NA Intergenic L2a|LINE|L2 -44729 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 579-151 chr7 17428630 17429068 + 2 NA intron (NR_110015, intron 1 of 2) L1MB3|LINE|L1 53932 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 512-77 chr14 66855218 66855598 + 2 NA intron (NM_001024218, intron 4 of 21) L1MB4|LINE|L1 -334032 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 243-32 chr10 16361352 16361524 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -75505 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 218-170 chr2 137580432 137580581 + 2 NA intron (NM_001316349, intron 17 of 27) intron (NM_001316349, intron 17 of 27) 347426 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 369-316 chr5 27450248 27450504 + 2 NA Intergenic L1MA9|LINE|L1 -21916 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 190-61 chr15 33833434 33833569 + 2 NA intron (NM_001243996, intron 85 of 102) intron (NM_001243996, intron 85 of 102) -134996 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 240-29 chr1 227621532 227621717 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 58068 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 256-66 chr11 42997566 42997744 + 2 NA Intergenic MLT2A1|LTR|ERVL 271714 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 425-193 chr3 162555740 162556004 + 2 NA Intergenic Intergenic 747429 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 379-241 chr4 91321343 91321714 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 955774 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 208-26 chr10 76067609 76067790 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 284938 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 245-339 chr8 49528185 49528376 + 2 NA Intergenic Intergenic -16100 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 298-232 chr2 140213871 140214161 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 372669 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 561-23 chr10 62699248 62699617 + 2 NA Intergenic L1MEg|LINE|L1 -105288 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 201-237 chr8 73042918 73043047 + 2 NA intron (NM_017489, intron 9 of 9) intron (NM_017489, intron 9 of 9) 34118 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 327-31 chr1 238184369 238184562 + 2 NA Intergenic L1M4a1|LINE|L1 -293543 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 440-55 chr12 129579867 129580210 + 2 NA intron (NM_133448, intron 2 of 8) LTR16E2|LTR|ERVL 323987 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 562-222 chr8 122774839 122775259 + 2 NA Intergenic L2c|LINE|L2 -6606 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 190-77 chr18 59690674 59690849 + 2 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 6662 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 236-192 chr2 195368452 195368660 + 2 NA Intergenic Intergenic -288402 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 244-92 chr14 58676350 58676506 + 2 NA Intergenic MIR3|SINE|MIR 37591 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 365-45 chr10 41803849 41804093 + 2 NA Intergenic ALR/Alpha|Satellite|centr 564074 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 767-43 chr6 52195888 52196431 + 2 NA Intergenic Intergenic 9784 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 355-169 chr15 45974236 45974488 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 269167 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 372-312 chr3 5638596 5638957 + 2 NA Intergenic MER89|LTR|ERV1 -388521 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 348-352 chr4 45888453 45888645 + 2 NA Intergenic L1PA15|LINE|L1 235505 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 366-155 chr16 73843863 73844143 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 371518 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 333-22 chr1 98448006 98448297 + 2 NA Intergenic L1P4|LINE|L1 -213570 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 544-100 chr19 37752318 37752758 + 2 NA intron (NM_001172690, intron 4 of 4) L1MB7|LINE|L1 27052 NM_001172692 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 249-232 chr2 226711228 226711445 + 2 NA Intergenic Intergenic -52543 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 361-288 chr3 94703029 94703237 + 2 NA Intergenic Intergenic -235130 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 332-332 chr3 89982599 89982877 + 2 NA Intergenic MLT2A1|LTR|ERVL 875117 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 256-111 chr13 94517219 94517423 + 2 NA intron (NM_001322186, intron 1 of 9) L2b|LINE|L2 32085 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 303-150 chr15 94726926 94727179 + 2 NA Intergenic Intergenic -128311 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 570-115 chr2 162311130 162311568 + 2 NA intron (NM_022168, intron 1 of 15) intron (NM_022168, intron 1 of 15) 7335 NM_022168 64135 Hs.163173 NM_022168 ENSG00000115267 IFIH1 AGS7|Hlcd|IDDM19|MDA-5|MDA5|RLR-2|SGMRT1 interferon induced with helicase C domain 1 protein-coding 599-84 chr3 77535755 77536153 + 2 NA intron (NM_001290039, intron 7 of 26) intron (NM_001290039, intron 7 of 26) 437942 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 132-70 chr6 102628820 102628906 + 2 NA Intergenic L1MA3|LINE|L1 1229878 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 260-175 chr17 79647455 79647625 + 2 NA Intergenic Intergenic -36489 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 285-157 chr18 2600714 2600886 + 2 NA intron (NM_006101, intron 12 of 16) L1MB5|LINE|L1 29243 NM_006101 10403 Hs.414407 NM_006101 ENSG00000080986 NDC80 HEC|HEC1|HsHec1|KNTC2|TID3|hsNDC80 NDC80 kinetochore complex component protein-coding 547-238 chr8 66205748 66206164 + 2 NA Intergenic Intergenic 13842 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 313-54 chr10 85674687 85674964 + 2 NA intron (NM_017551, intron 12 of 15) intron (NM_017551, intron 12 of 15) 97094 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 250-103 chr12 128614622 128614828 + 2 NA intron (NM_001136103, intron 3 of 8) MLT1N2|LTR|ERVL-MaLR 209233 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 199-130 chr2 181543298 181543459 + 2 NA intron (NR_027690, intron 10 of 11) intron (NR_027690, intron 10 of 11) 85992 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 202-185 chr4 53146877 53147009 + 2 NA intron (NM_152540, intron 4 of 8) MER44A|DNA|TcMar-Tigger 219118 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 196-174 chr3 153473274 153473403 + 2 NA intron (NR_146713, intron 5 of 6) HERVL-int|LTR|ERVL -11157 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 330-217 chr18 4994287 4994552 + 2 NA Intergenic Intergenic -86763 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 161-124 chr8 87889463 87889598 + 2 NA Intergenic Intergenic -15515 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 272-77 chr11 94785679 94785892 + 2 NA intron (NM_001301007, intron 1 of 11) intron (NM_001301007, intron 1 of 11) 17429 NM_001301007 154810 Hs.503594 NM_130847 ENSG00000166025 AMOTL1 JEAP angiomotin like 1 protein-coding 384-308 chr5 159633109 159633360 + 2 NA Intergenic Intergenic -166958 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 442-321 chrX 46230927 46231304 + 2 NA Intergenic Intergenic 96559 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 326-323 chr3 13707343 13707515 + 2 NA intron (NR_027103, intron 2 of 5) intron (NR_027103, intron 2 of 5) 56708 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 208-127 chr2 136625559 136625704 + 2 NA Intergenic MIRb|SINE|MIR -139914 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 273-468 chr9 27845203 27845377 + 2 NA Intergenic Intergenic -271424 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 322-551 chr8 134270863 134271137 + 2 NA Intergenic AluSq2|SINE|Alu -327071 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 379-45 chr10 93853512 93853865 + 2 NA Intergenic LTR8A|LTR|ERV1 -40290 NM_001345993 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 356-340 chr3 179648315 179648628 + 2 NA Intergenic AluSg7|SINE|Alu -4569 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 394-108 chr14 78105654 78105863 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -64615 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 344-316 chr3 80703815 80704075 + 2 NA Intergenic L1PB4|LINE|L1 -60952 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 566-125 chr3 85788238 85788714 + 2 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 39574 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 360-493 chr9 111250921 111251147 + 2 NA Intergenic MIRc|SINE|MIR 20180 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 209-242 chr4 168181636 168181743 + 2 NA exon (NM_007193, exon 10 of 12) exon (NM_007193, exon 10 of 12) 89152 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 483-286 chr9 68894035 68894466 + 2 NA intron (NM_003558, intron 7 of 15) intron (NM_003558, intron 7 of 15) 81591 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 237-236 chr3 56156911 56157083 + 2 NA intron (NR_132749, intron 4 of 17) MIRb|SINE|MIR -304403 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 483-275 chr8 125849307 125849647 + 2 NA Intergenic MIR|SINE|MIR 101720 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 483-34 chr11 6065823 6066168 + 2 NA Intergenic Intergenic -38254 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 519-104 chr2 63101748 63102125 + 2 NA Intergenic L1MA4A|LINE|L1 17606 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 514-256 chr6 164489870 164490336 + 2 NA Intergenic L1P3|LINE|L1 331960 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 410-345 chrX 103166867 103167174 + 2 NA Intergenic L1MC5|LINE|L1 -48072 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 295-362 chr4 161576696 161576901 + 2 NA intron (NM_001128428, intron 8 of 14) intron (NM_001128428, intron 8 of 14) -445935 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 426-36 chr10 131569509 131569885 + 2 NA Intergenic Intergenic 220502 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 368-24 chr1 168734262 168734590 + 2 NA Intergenic Intergenic -5220 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 308-503 chr8 107128915 107129155 + 2 NA Intergenic Intergenic 207480 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 445-238 chr6 105440756 105441195 + 2 NA Intergenic L3b|LINE|CR1 -37893 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 289-477 chr8 132540294 132540490 + 2 NA Intergenic L1MEg|LINE|L1 21087 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 320-474 chr5 180403236 180403503 + 2 NA Intergenic Intergenic -50033 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 294-295 chr3 64714016 64714306 + 2 NA intron (NR_038264, intron 1 of 5) intron (NR_038264, intron 1 of 5) -26161 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 466-49 chr11 90678750 90679052 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -123044 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 313-118 chr12 115922441 115922728 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 226070 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 410-229 chr5 4471491 4471783 + 2 NA Intergenic Intergenic -301844 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 233-304 chr5 67558093 67558312 + 2 NA Intergenic L3|LINE|CR1 88587 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 544-9 chr1 74864942 74865345 + 2 NA Intergenic L1PREC2|LINE|L1 -131735 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 263-355 chr6 49223062 49223285 + 2 NA Intergenic L3|LINE|CR1 240080 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 319-391 chr4 163416508 163416721 + 2 NA Intergenic L2c|LINE|L2 57140 NM_032136 84076 Hs.303923 NM_032136 ENSG00000151005 TKTL2 - transketolase like 2 protein-coding 261-306 chr5 35614655 35614849 + 2 NA Intergenic L1MA4A|LINE|L1 -3111 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 143-92 chrX 100906515 100906610 + 2 NA Intergenic Intergenic 22355 NM_212559 402415 Hs.364911 NM_212559 ENSG00000182489 XKRX XKR2|XPLAC|XRG2 XK related X-linked protein-coding 427-181 chr4 59096079 59096342 + 2 NA Intergenic Intergenic 82637 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 384-247 chr3 198016321 198016518 + 2 NA intron (NR_026786, intron 12 of 16) MER5B|DNA|hAT-Charlie 23048 NR_046669 100873947 Hs.637166 NR_046669 ENSG00000232832 LMLN-AS1 - LMLN antisense RNA 1 ncRNA 311-258 chr2 82551416 82551723 + 2 NA Intergenic Intergenic -305234 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 265-253 chr3 194076265 194076457 + 2 NA Intergenic Intergenic -5391 NR_136180 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 337-510 chr7 7068680 7068875 + 2 NA Intergenic SATR1|Satellite|Satellite -1732 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 301-71 chr11 76055488 76055710 + 2 NA intron (NM_003369, intron 12 of 14) L1ME2z|LINE|L1 150903 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 374-35 chr10 61568969 61569180 + 2 NA Intergenic AluSq2|SINE|Alu 89033 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 333-534 chr7 41601958 41602124 + 2 NA Intergenic Intergenic -91878 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 306-507 chr8 86938893 86939128 + 2 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 72595 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 228-65 chr12 26524114 26524336 + 2 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 308969 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 210-210 chr4 142881360 142881481 + 2 NA Intergenic Intergenic -34885 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 366-158 chr16 86840777 86841009 + 2 NA Intergenic MLT2A1|LTR|ERVL 118802 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 237-366 chr8 18919197 18919396 + 2 NA intron (NM_015310, intron 2 of 15) L3|LINE|CR1 -32239 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 426-139 chr2 119406092 119406504 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -25556 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 296-2 chr1 11418495 11418758 + 2 NA Intergenic Intergenic -60529 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 313-380 chr4 45902405 45902662 + 2 NA Intergenic L1PREC2|LINE|L1 221521 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 227-101 chr14 40262533 40262686 + 2 NA Intergenic Intergenic -692102 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 475-89 chr15 79876795 79877134 + 2 NA intron (NR_037654, intron 2 of 2) AluSc|SINE|Alu 20033 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 353-98 chr11 131094934 131095224 + 2 NA Intergenic MIR|SINE|MIR -178592 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 294-90 chr12 100690194 100690438 + 2 NA Intergenic MIR|SINE|MIR 96698 NM_001303131 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 298-348 chr4 186512007 186512282 + 2 NA Intergenic L1M6|LINE|L1 -11086 NR_033901 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 347-258 chr2 223201918 223202256 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 150157 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 349-153 chr14 47313358 47313697 + 2 NA intron (NM_001113498, intron 1 of 16) AluJb|SINE|Alu 29719 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 385-406 chr9 72472832 72473136 + 2 NA Intergenic Intergenic -48817 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 271-65 chr11 19256647 19256855 + 2 NA Intergenic MIRc|SINE|MIR -15096 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 328-597 chr9 12010758 12011070 + 2 NA Intergenic Intergenic -682471 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 348-465 chr6 118761671 118762003 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -20871 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 511-134 chr2 168417064 168417554 + 2 NA Intergenic L1M5|LINE|L1 -38963 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 598-88 chr3 76136118 76136553 + 2 NA Intergenic Intergenic -350786 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 368-28 chr1 177030444 177030672 + 2 NA intron (NM_207108, intron 4 of 21) L1ME4a|LINE|L1 -1113 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 486-271 chr7 17400121 17400595 + 2 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 25441 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 170-117 chr5 85102482 85102604 + 2 NA Intergenic Intergenic -717663 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 147-23 chr14 61929311 61929453 + 2 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 1687 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 345-270 chr2 104396445 104396631 + 2 NA intron (NR_037885, intron 1 of 2) MLT1I|LTR|ERVL-MaLR 11794 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 153-16 chr10 84970878 84970987 + 2 NA Intergenic L1M5|LINE|L1 227973 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 489-259 chr8 130452041 130452447 + 2 NA Intergenic Intergenic -8570 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 425-220 chr5 12596615 12596888 + 2 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 21894 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 238-265 chr4 55598928 55599100 + 2 NA intron (NR_120489, intron 8 of 8) intron (NR_120489, intron 8 of 8) -6769 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 432-126 chr2 69560482 69560877 + 2 NA intron (NM_014911, intron 2 of 21) Charlie8|DNA|hAT-Charlie -40508 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 416-281 chr5 129271969 129272322 + 2 NA Intergenic L1MC1|LINE|L1 125002 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 286-172 chr18 13357349 13357533 + 2 NA intron (NM_181482, intron 2 of 5) L1MC5|LINE|L1 70093 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 374-19 chr1 194486079 194486437 + 2 NA Intergenic L1MA9|LINE|L1 1181513 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 655-9 chr1 175749263 175749746 + 2 NA Intergenic Intergenic -5909 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 426-125 chr2 12946545 12946849 + 2 NA Intergenic Intergenic 60316 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 223-102 chr15 68030363 68030537 + 2 NA Intergenic Intergenic -23729 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 347-98 chr12 77127154 77127328 + 2 NA Intergenic L1MB3|LINE|L1 -61672 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 304-506 chr8 57530260 57530445 + 2 NA Intergenic AluSq2|SINE|Alu 186565 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 656-107 chr6 45383997 45384639 + 2 NA intron (NM_001015051, intron 2 of 7) AluSz6|SINE|Alu -6384 NM_001350324 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 194-136 chr3 185338347 185338520 + 2 NA intron (NM_001242317, intron 2 of 12) intron (NM_001242317, intron 2 of 12) -24703 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 790-60 chr9 32134492 32135049 + 2 NA Intergenic Intergenic -249833 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 364-321 chr4 167975669 167975919 + 2 NA Intergenic L1PA13|LINE|L1 -116743 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 424-246 chr6 140674252 140674602 + 2 NA Intergenic Intergenic -9387 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 463-83 chr13 102222102 102222515 + 2 NA intron (NM_001321940, intron 1 of 5) L2c|LINE|L2 88378 NM_001321934 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 270-315 chr5 124170808 124170998 + 2 NA intron (NR_125774, intron 4 of 5) L1ME2z|LINE|L1 267617 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 197-151 chr4 66789908 66790073 + 2 NA Intergenic Intergenic 513166 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 248-306 chr5 27481551 27481738 + 2 NA intron (NR_038848, intron 3 of 4) intron (NR_038848, intron 3 of 4) 9352 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 378-402 chr7 48186086 48186369 + 2 NA intron (NM_152701, intron 1 of 61) L1ME3Cz|LINE|L1 14769 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 272-30 chr1 245991088 245991305 + 2 NA intron (NM_022743, intron 5 of 11) L2a|LINE|L2 426216 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 417-54 chr12 1032622 1032975 + 2 NA intron (NR_027949, intron 2 of 15) intron (NR_027949, intron 2 of 15) 5050 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 289-23 chr1 166896240 166896426 + 2 NA Intergenic Intergenic -20069 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 296-292 chr3 37996125 37996369 + 2 NA intron (NM_015873, intron 4 of 18) intron (NM_015873, intron 4 of 18) 2109 NR_163266 50853 Hs.103665 NM_015873 ENSG00000136059 VILL - villin like protein-coding 551-198 chr7 111626916 111627293 + 2 NA Intergenic L1MA4A|LINE|L1 -64587 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 130-44 chr2 158778869 158778988 + 2 NA Intergenic L1MD1|LINE|L1 -16389 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 174-76 chr20 33718166 33718301 + 2 NA intron (NM_183397, intron 1 of 2) AluY|SINE|Alu 2077 NM_007238 11264 Hs.654857 NM_007238 ENSG00000101417 PXMP4 PMP24 peroxisomal membrane protein 4 protein-coding 259-274 chr4 452089 452280 + 2 NA intron (NM_133474, intron 2 of 2) HERVL66-int|LTR|ERVL 22025 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 362-75 chr10 105618197 105618466 + 2 NA Intergenic L2b|LINE|L2 202002 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 224-262 chr5 135950188 135950368 + 2 NA intron (NM_002302, intron 3 of 3) L1ME3A|LINE|L1 4705 NM_002302 3950 Hs.512580 NM_002302 ENSG00000145826 LECT2 chm-II|chm2 leukocyte cell derived chemotaxin 2 protein-coding 289-184 chr18 4934160 4934373 + 2 NA Intergenic Intergenic -146916 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 282-189 chr19 52476098 52476300 + 2 NA intron (NM_001366182, intron 3 of 5) HERVK3-int|LTR|ERVK 22646 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 411-55 chr11 44464487 44464726 + 2 NA Intergenic L1MB2|LINE|L1 -101057 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 490-19 chr1 118613517 118613930 + 2 NA Intergenic L1MA2|LINE|L1 374620 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 357-222 chr2 158786609 158786959 + 2 NA Intergenic L1ME4b|LINE|L1 -8533 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 363-247 chr2 238839584 238839871 + 2 NA Intergenic L1MC5a|LINE|L1 8180 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 327-223 chr19 31781688 31781898 + 2 NA Intergenic Intergenic 189512 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 347-210 chr2 48343119 48343372 + 2 NA intron (NM_002158, intron 2 of 6) intron (NM_002158, intron 2 of 6) 28563 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 284-70 chr11 37945652 37945818 + 2 NA intron (NR_135110, intron 1 of 2) L1PB4|LINE|L1 7134 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 561-152 chr4 119813608 119813970 + 2 NA Intergenic L1MB1|LINE|L1 -9274 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 341-464 chr6 64153922 64154182 + 2 NA intron (NM_001292009, intron 31 of 43) L1ME3Cz|LINE|L1 347216 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 583-60 chr15 57907341 57907782 + 2 NA Intergenic MIR|SINE|MIR 106462 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 316-84 chr10 120694143 120694420 + 2 NA Intergenic L1MA6|LINE|L1 96332 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 215-314 chr8 89518526 89518734 + 2 NA Intergenic L1ME5|LINE|L1 239081 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 190 chr1 34353426 34353545 + 2 NA Intergenic L1ME4a|LINE|L1 176578 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 312-339 chr3 104279027 104279276 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -755035 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 185-157 chr4 179263892 179264067 + 2 NA Intergenic L1M3|LINE|L1 -1356043 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 306-515 chr8 105665868 105666099 + 2 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 346440 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 211-311 chr8 131131255 131131370 + 2 NA Intergenic Intergenic -90403 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 308-164 chr15 83533170 83533396 + 2 NA intron (NM_001324186, intron 2 of 9) intron (NM_001324186, intron 2 of 9) 42669 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 341-213 chr18 77629648 77629875 + 2 NA Intergenic Intergenic 363966 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 583-171 chr9 30155187 30155586 + 2 NA Intergenic Intergenic 253068 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 460-152 chr2 163805289 163805633 + 2 NA Intergenic Intergenic -69453 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 313-20 chr1 115957851 115958016 + 2 NA intron (NR_125970, intron 2 of 4) L1MEc|LINE|L1 -18580 NM_018420 55356 Hs.125482 NM_018420 ENSG00000163393 SLC22A15 FLIPT1|PRO34686 solute carrier family 22 member 15 protein-coding 342-371 chr4 127061991 127062179 + 2 NA Intergenic Intergenic -570872 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 283-127 chr14 46038932 46039140 + 2 NA Intergenic Intergenic -25123 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 714-32 chr19 24218800 24219325 + 2 NA Intergenic ALR/Alpha|Satellite|centr -55615 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 669-55 chr2 130952026 130952488 + 2 NA intron (NM_001367493, intron 4 of 13) L1M4b|LINE|L1 115343 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 234-232 chr3 34518000 34518213 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 719476 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 136-37 chr16 82244602 82244723 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -74438 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 633-49 chr16 61870550 61870961 + 2 NA intron (NM_001796, intron 3 of 11) MER4B|LTR|ERV1 165683 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 347-171 chr16 78469591 78469776 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 370029 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 454-197 chr22 25639534 25639867 + 2 NA intron (NM_001362778, intron 2 of 19) L1ME2|LINE|L1 75025 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 269-40 chr10 24529196 24529442 + 2 NA intron (NM_001321681, intron 10 of 13) MER2B|DNA|TcMar-Tigger 62788 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 312-26 chr1 191420268 191420494 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -191883 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 340-540 chr8 93162279 93162614 + 2 NA intron (NR_161372, intron 1 of 2) Tigger3|DNA|TcMar-Tigger 4404 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 256-50 chr10 91073081 91073271 + 2 NA Intergenic L2|LINE|L2 27368 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 255-157 chr17 34712904 34713096 + 2 NA Intergenic Intergenic 132251 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 264-265 chr3 17570458 17570656 + 2 NA intron (NM_001349089, intron 1 of 20) L1ME2z|LINE|L1 129463 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 335-227 chr2 4787465 4787721 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -131371 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 263-43 chr10 33219942 33220152 + 2 NA intron (NM_001244973, intron 8 of 16) intron (NM_001244973, intron 8 of 16) -103240 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 405-70 chr12 104020360 104020593 + 2 NA intron (NM_001316967, intron 2 of 10) L2a|LINE|L2 43701 NM_031302 83468 Hs.631650 NM_031302 ENSG00000120820 GLT8D2 - glycosyltransferase 8 domain containing 2 protein-coding 470-299 chrX 87900131 87900463 + 2 NA Intergenic MER57-int|LTR|ERV1 382495 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 427-58 chr12 97447517 97447898 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -15069 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 230-272 chr4 123031629 123031797 + 2 NA intron (NM_001345856, intron 11 of 15) intron (NM_001345856, intron 11 of 15) 108635 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 309-364 chr3 137409022 137409308 + 2 NA Intergenic L2c|LINE|L2 -355150 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 240-30 chr1 228026494 228026728 + 2 NA intron (NM_033131, intron 2 of 3) L1PB3|LINE|L1 19613 NM_033131 89780 Hs.336930 NM_033131 ENSG00000154342 WNT3A - Wnt family member 3A protein-coding 365-410 chr8 124003771 124004091 + 2 NA intron (NM_001039112, intron 13 of 40) intron (NM_001039112, intron 13 of 40) 36851 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 661-26 chr14 101140545 101140986 + 2 NA Intergenic L1M4|LINE|L1 19909 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 301-87 chr12 20023734 20023912 + 2 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 9138 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 390-74 chr12 42544524 42544905 + 2 NA intron (NM_153026, intron 1 of 7) HAL1|LINE|L1 45032 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 1037-8 chr2 130933664 130934391 + 2 NA intron (NM_001367493, intron 3 of 13) L1MB5|LINE|L1 97113 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 409-129 chr2 10126495 10126788 + 2 NA intron (NM_001034, intron 5 of 9) intron (NM_001034, intron 5 of 9) 3902 NM_001034 6241 Hs.226390 NM_001034 ENSG00000171848 RRM2 R2|RR2|RR2M ribonucleotide reductase regulatory subunit M2 protein-coding 342-494 chr7 84493053 84493296 + 2 NA Intergenic Intergenic -39302 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 275-290 chr5 45860035 45860207 + 2 NA Intergenic L1PA13|LINE|L1 -163741 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 238-374 chr8 50154898 50155069 + 2 NA intron (NR_135798, intron 1 of 15) L1MD3|LINE|L1 -9148 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 533-18 chr10 52665561 52665939 + 2 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 89654 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 364-275 chr3 86395438 86395665 + 2 NA Intergenic Intergenic -86392 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 667-103 chr7 61912285 61912931 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1391448 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 365-72 chr11 58337157 58337416 + 2 NA Intergenic L1MC|LINE|L1 21783 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 324-218 chr17_KI270730v1_random 103044 103330 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 409-169 chr20 15081667 15081982 + 2 NA intron (NM_001351663, intron 5 of 17) L4_A_Mam|LINE|RTE-X -115016 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 313-564 chrX 18691080 18691250 + 2 NA intron (NM_152226, intron 1 of 17) intron (NM_152226, intron 1 of 17) 239 NM_152226 5475 Hs.211589 NM_006240 ENSG00000086717 PPEF1 PP7|PPEF|PPP7C|PPP7CA protein phosphatase with EF-hand domain 1 protein-coding 348-137 chr14 56920847 56921080 + 2 NA TTS (NR_146411) TTS (NR_146411) 107805 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 338-449 chr5 129987080 129987286 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 82718 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 423-256 chr6 161827992 161828313 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 357175 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 238-80 chr12 22481174 22481307 + 2 NA intron (NM_001286176, intron 14 of 26) intron (NM_001286176, intron 14 of 26) 62957 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 277-100 chr13 43577452 43577616 + 2 NA intron (NM_001347965, intron 1 of 15) MLT1A1|LTR|ERVL-MaLR 51943 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 429-258 chr6 123191515 123191803 + 2 NA Intergenic L2a|LINE|L2 195424 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 284-184 chr19 44448280 44448555 + 2 NA promoter-TSS (NM_014518) promoter-TSS (NM_014518) 55 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 304-153 chr14 96137462 96137710 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -67212 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 517-156 chr20 19557781 19558234 + 2 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -273411 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 286-457 chr8 93239687 93239903 + 2 NA Intergenic Intergenic -72945 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 139-26 chr14 31341879 31342009 + 2 NA intron (NM_015473, intron 21 of 35) intron (NM_015473, intron 21 of 35) 78606 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 358-60 chr11 21377052 21377345 + 2 NA intron (NM_201551, intron 15 of 18) L1PA16|LINE|L1 707612 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 483-133 chr2 194848994 194849370 + 2 NA Intergenic Intergenic 118587 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 216-226 chr3 87456480 87456656 + 2 NA Intergenic Intergenic -179984 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 393-292 chr5 166093649 166093970 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 832561 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 328-463 chr5 102174861 102175088 + 2 NA Intergenic Intergenic 121310 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 511-71 chr14 95738932 95739308 + 2 NA intron (NR_148060, intron 2 of 2) intron (NR_148060, intron 2 of 2) 23637 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 201-147 chr3 6462611 6462724 + 2 NA Intergenic L1MB8|LINE|L1 342782 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 207-135 chr2 55016785 55016927 + 2 NA intron (NM_153828, intron 1 of 6) MIRb|SINE|MIR -6584 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 565-22 chr11 21732125 21732530 + 2 NA Intergenic Intergenic -460758 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 564-64 chr15 91437071 91437541 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -26033 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 230-36 chr10 37829907 37830063 + 2 NA non-coding (NR_147991, exon 5 of 5) non-coding (NR_147991, exon 5 of 5) 27625 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 305-311 chr20 54855838 54855999 + 2 NA Intergenic Intergenic 380325 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 477-142 chr2 19377003 19377300 + 2 NA Intergenic Intergenic -18528 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 415-271 chr8 20190678 20190939 + 2 NA Intergenic L1ME4a|LINE|L1 -6573 NM_001693 526 Hs.295917 NM_001693 ENSG00000147416 ATP6V1B2 ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2 ATPase H+ transporting V1 subunit B2 protein-coding 333-615 chrX 6668830 6669059 + 2 NA Intergenic Intergenic -133826 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 114-25 chr18 69824902 69825001 + 2 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 122922 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 609-103 chr5 83648336 83648845 + 2 NA intron (NM_001884, intron 3 of 4) intron (NM_001884, intron 3 of 4) 72265 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 328-471 chr5 124958773 124959046 + 2 NA Intergenic Intergenic -77922 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 320-447 chr5 85712649 85712957 + 2 NA Intergenic Intergenic -569641 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 368-172 chr16 10706193 10706428 + 2 NA Intergenic SATR1|Satellite|Satellite -11380 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 236-106 chr13 100454639 100454776 + 2 NA intron (NR_148027, intron 22 of 23) intron (NR_148027, intron 22 of 23) 26308 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 274-111 chr13 88487822 88488007 + 2 NA Intergenic LOR1b|LTR|ERV1 -52915 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 418-238 chr6 78798026 78798278 + 2 NA Intergenic L1PREC2|LINE|L1 -69399 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 492-254 chr8 53009482 53009945 + 2 NA Intergenic L1MB8|LINE|L1 69805 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 228-272 chr5 99461487 99461699 + 2 NA Intergenic Intergenic -72397 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 529-79 chr16 77147797 77148185 + 2 NA Intergenic Intergenic -43199 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 420-314 chr9 138046398 138046626 + 2 NA intron (NM_001243812, intron 21 of 45) intron (NM_001243812, intron 21 of 45) -1441 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 615-97 chr4 92789904 92790342 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 485724 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 316-350 chr3 77375460 77375772 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 277604 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 420-247 chr6 26631297 26631628 + 2 NA Intergenic Intergenic 28284 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 523-233 chr5 150939666 150940039 + 2 NA intron (NR_026867, intron 4 of 4) L1M4|LINE|L1 6732 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 367-496 chrX 147562179 147562428 + 2 NA Intergenic (CTTATATA)n|Simple_repeat|Simple_repeat -277575 NR_030240 574518 NR_030240 ENSG00000207867 MIR514A3 MIR514-3|MIRN514-3|hsa-mir-514a-3 microRNA 514a-3 ncRNA 396-192 chr20 19357149 19357377 + 2 NA intron (NM_020689, intron 2 of 16) MLT1D|LTR|ERVL-MaLR -72667 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 308-358 chr4 117187248 117187514 + 2 NA Intergenic Intergenic -101805 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 370-154 chr15 23745397 23745726 + 2 NA Intergenic L1M1|LINE|L1 -58256 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 691-81 chr7 17391183 17391600 + 2 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 16474 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 217-320 chr6 27356668 27356836 + 2 NA Intergenic Intergenic 14773 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 312-541 chr9 22058328 22058526 + 2 NA non-coding (NR_047539, exon 8 of 13) non-coding (NR_047539, exon 8 of 13) -49114 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 393-197 chr20 16978758 16979049 + 2 NA Intergenic Intergenic 230550 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 456-96 chr14 68170292 68170562 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 346835 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 402-247 chr4 121392782 121393106 + 2 NA Intergenic Intergenic -11926 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 316-563 chr8 120114321 120114576 + 2 NA Intergenic Intergenic -10654 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 572-164 chr7 127173493 127173952 + 2 NA intron (NR_163850, intron 1 of 9) 7SK|RNA|RNA -41405 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 204-78 chr13 89576089 89576250 + 2 NA Intergenic L1MB1|LINE|L1 -11756 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 349-518 chr9 85128418 85128603 + 2 NA Intergenic Intergenic 422609 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 316-44 chr1 223146863 223147127 + 2 NA Intergenic Intergenic -3747 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 318-430 chr5 15278524 15278774 + 2 NA Intergenic Intergenic -12089 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 473-72 chr13 85061396 85061770 + 2 NA Intergenic Intergenic 86474 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 200-288 chr9 38033500 38033647 + 2 NA intron (NM_003028, intron 1 of 5) intron (NM_003028, intron 1 of 5) 35654 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 317-364 chr4 142656000 142656181 + 2 NA intron (NM_003866, intron 2 of 26) MER61A|LTR|ERV1 190445 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 198-12 chr1 185720135 185720269 + 2 NA Intergenic Intergenic -14189 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 284-91 chr12 70390355 70390564 + 2 NA intron (NM_014505, intron 1 of 2) ERVL-E-int|LTR|ERVL 24169 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 392-316 chr8 42955955 42956218 + 2 NA intron (NM_032410, intron 6 of 21) intron (NM_032410, intron 6 of 21) 59108 NM_032410 84376 Hs.162852 NM_032410 ENSG00000168172 HOOK3 HK3 hook microtubule tethering protein 3 protein-coding 514-216 chr5 13392373 13392770 + 2 NA Intergenic Intergenic -359685 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 316-82 chr10 111898367 111898585 + 2 NA Intergenic Intergenic 285289 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 535-40 chr11 32787695 32788182 + 2 NA intron (NM_001008391, intron 1 of 17) intron (NM_001008391, intron 1 of 17) 6720 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 231-330 chr7 45630492 45630646 + 2 NA intron (NM_001281768, intron 5 of 9) MLT1D|LTR|ERVL-MaLR 56201 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 393-222 chr3 95230963 95231290 + 2 NA Intergenic MERX|DNA|TcMar-Tigger 292863 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 207-57 chr11 97720220 97720329 + 2 NA Intergenic L1MB7|LINE|L1 1211849 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 435-4 chr1 43269520 43269911 + 2 NA promoter-TSS (NM_144626) promoter-TSS (NM_144626) -268 NM_144626 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 247-124 chr15 25990697 25990861 + 2 NA intron (NR_040082, intron 1 of 4) L3b|LINE|CR1 88419 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 296-447 chr7 109535103 109535391 + 2 NA Intergenic Intergenic 424966 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 673-94 chr5 22595230 22595733 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 257863 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 621-76 chr3 49945201 49945661 + 2 NA intron (NM_001349194, intron 1 of 17) L1MB3|LINE|L1 5281 NM_001349190 10180 Hs.696735 NM_005777 ENSG00000004534 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 440-145 chr21 27179271 27179546 + 2 NA Intergenic Intergenic -212320 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 295-82 chr11 101138230 101138461 + 2 NA intron (NR_073144, intron 3 of 4) intron (NR_073144, intron 3 of 4) -8532 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 330-499 chr7 115281721 115281995 + 2 NA Intergenic Intergenic -50503 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 260-159 chr16 14271763 14272002 + 2 NA Intergenic L1MB7|LINE|L1 -30406 NR_132983 100129781 Hs.190748 NR_132983 MIR193BHG - MIR193B host gene ncRNA 472-100 chr15 45477261 45477654 + 2 NA Intergenic Intergenic -33679 NR_022014 283651 Hs.574240 NM_173609 HMGN2P46 C15orf21|D-PCa-2 high mobility group nucleosomal binding domain 2 pseudogene 46 pseudo 326-553 chr8 129433476 129433706 + 2 NA intron (NR_130920, intron 1 of 3) L1M1|LINE|L1 50551 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 292-432 chr8 87675100 87675316 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 198807 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 258-336 chr5 152776978 152777136 + 2 NA intron (NR_109877, intron 3 of 4) L1ME2z|LINE|L1 195292 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 219-254 chr4 42950570 42950731 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 57384 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 472-105 chr15 86806366 86806753 + 2 NA intron (NM_152336, intron 23 of 24) MIR|SINE|MIR -126321 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 149-60 chr20 45603408 45603537 + 2 NA Intergenic L1MA9|LINE|L1 -24188 NM_130896 90199 Hs.116128 NM_130896 ENSG00000158901 WFDC8 C20orf170|HEL-S-292|WAP8|dJ461P17.1 WAP four-disulfide core domain 8 protein-coding 300-204 chr2 105834098 105834288 + 2 NA intron (NM_003581, intron 2 of 4) L1MA5|LINE|L1 -17654 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 305-275 chr2 148121865 148122102 + 2 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -100379 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 433-236 chr5 159012537 159012833 + 2 NA intron (NM_182708, intron 5 of 14) AluJb|SINE|Alu 85271 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 168-71 chr20 51213363 51213482 + 2 NA Intergenic Intergenic -190315 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 402-98 chr15 79073778 79073987 + 2 NA intron (NM_001145648, intron 1 of 26) MER5A1|DNA|hAT-Charlie 16898 NM_001145648 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 417-94 chr15 69996953 69997322 + 2 NA Intergenic MIRb|SINE|MIR 82331 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 276-130 chr13 83297575 83297736 + 2 NA Intergenic L1PA16|LINE|L1 584738 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 273-113 chr12 118504780 118505038 + 2 NA Intergenic L1MB3|LINE|L1 128354 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 710-100 chrX 56843695 56844245 + 2 NA Intergenic Intergenic -106386 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 308-390 chr5 94561900 94562065 + 2 NA intron (NM_001145678, intron 2 of 20) intron (NM_001145678, intron 2 of 20) 56622 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 252-249 chr3 9130467 9130609 + 2 NA intron (NM_014850, intron 1 of 21) MIRb|SINE|MIR -61955 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 304-104 chr12 25289621 25289861 + 2 NA Intergenic L1ME2z|LINE|L1 -38812 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 558-205 chr7 145857503 145857870 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -916585 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 181-115 chr5 15436380 15436515 + 2 NA Intergenic L1ME1|LINE|L1 -63733 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 493-54 chr11 116003355 116003711 + 2 NA Intergenic L1ME3Cz|LINE|L1 -243333 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 261-332 chr6 46476461 46476668 + 2 NA intron (NM_001251973, intron 1 of 4) intron (NM_001251973, intron 1 of 4) 14759 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 529-106 chr2 102185908 102186300 + 2 NA promoter-TSS (NM_001351449) promoter-TSS (NM_001351449) -869 NM_001351447 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 409-37 chr11 33477115 33477349 + 2 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 101124 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 348-460 chr6 95992265 95992513 + 2 NA Intergenic Intergenic -23585 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 274-293 chr4 143730374 143730604 + 2 NA Intergenic Intergenic -29814 NM_001168235 166752 Hs.252714 NM_001168235 ENSG00000183090 FREM3 - FRAS1 related extracellular matrix 3 protein-coding 307-429 chr6 95484985 95485241 + 2 NA Intergenic L1M1|LINE|L1 92338 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 248-69 chr11 92950288 92950489 + 2 NA Intergenic Intergenic -19235 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 349-270 chr2 119617316 119617514 + 2 NA intron (NR_073132, intron 15 of 24) intron (NR_073132, intron 15 of 24) -61752 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 328-356 chr3 89988393 89988628 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 880889 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 143-6 chr10 43747908 43748043 + 2 NA Intergenic Intergenic 30850 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 730-45 chr3 56375730 56376321 + 2 NA intron (NR_132749, intron 2 of 17) MLT1F2|LTR|ERVL-MaLR 92442 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 461-271 chr8 100348813 100349219 + 2 NA Intergenic Intergenic -12812 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 329-237 chr18 50663413 50663628 + 2 NA 5' UTR (NM_001292040, exon 2 of 4) 5' UTR (NM_001292040, exon 2 of 4) 103433 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 298-198 chr2 17502719 17502958 + 2 NA Intergenic L1MC2|LINE|L1 15602 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 319-154 chr14 90095557 90095777 + 2 NA intron (NM_022054, intron 1 of 1) MER21B|LTR|ERVL 33673 NM_022054 56659 Hs.510191 NM_022054 ENSG00000152315 KCNK13 K2p13.1|THIK-1|THIK1 potassium two pore domain channel subfamily K member 13 protein-coding 213-143 chr2 102322345 102322522 + 2 NA intron (NM_001282408, intron 1 of 6) intron (NM_001282408, intron 1 of 6) 10870 NM_016232 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 306-12 chr1 78366225 78366418 + 2 NA intron (NR_027310, intron 4 of 5) MLT1J1|LTR|ERVL-MaLR -124653 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 611-21 chr11 37491218 37491725 + 2 NA Intergenic Intergenic -447130 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 276-53 chr10 44347110 44347281 + 2 NA Intergenic Intergenic 37902 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 266-36 chr10 39180164 39180355 + 2 NA Intergenic ALR/Alpha|Satellite|centr 483663 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 153-35 chr15 86276822 86276938 + 2 NA intron (NM_152336, intron 15 of 24) intron (NM_152336, intron 15 of 24) 40088 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 317-277 chr20 42789789 42790041 + 2 NA intron (NM_133170, intron 3 of 31) intron (NM_133170, intron 3 of 31) 104432 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 295-189 chr18 75419348 75419566 + 2 NA intron (NM_001037331, intron 1 of 2) intron (NM_001037331, intron 1 of 2) 8246 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 489-143 chr2 107658279 107658667 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -95639 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 280-240 chr21 23517832 23518109 + 2 NA Intergenic Intergenic -133135 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 484-257 chr8 36231535 36232000 + 2 NA Intergenic LTR8A|LTR|ERV1 -521447 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 465-71 chr13 69660922 69661205 + 2 NA Intergenic MER4E|LTR|ERV1 438717 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 245-359 chr8 130143274 130143430 + 2 NA intron (NM_001362925, intron 14 of 29) L1ME4a|LINE|L1 -58584 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 329-21 chr1 163046137 163046396 + 2 NA Intergenic MIR1_Amn|SINE|MIR -22340 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 444-146 chr21 38845777 38846078 + 2 NA Intergenic L1ME2|LINE|L1 -11612 NR_109926 101928398 Hs.122403 NR_109926 LOC101928398 - uncharacterized LOC101928398 ncRNA 220-52 chr10 76529291 76529422 + 2 NA intron (NM_001305581, intron 6 of 6) MIRb|SINE|MIR -358688 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 243-339 chr4 150346215 150346450 + 2 NA intron (NM_001367550, intron 48 of 56) intron (NM_001367550, intron 48 of 56) -232757 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 273-454 chr8 113600662 113600893 + 2 NA Intergenic Intergenic -163838 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 335-31 chr1 218037034 218037234 + 2 NA Intergenic L1MB8|LINE|L1 -6371 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 340-575 chr9 132092986 132093236 + 2 NA Intergenic L1MC5|LINE|L1 -13244 NM_001253881 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 301-374 chr5 126565699 126565975 + 2 NA intron (NM_001202404, intron 9 of 15) L1M4|LINE|L1 29382 NM_001182 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 353-56 chr10 49197961 49198216 + 2 NA Intergenic AluSx3|SINE|Alu -9697 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 582-155 chr8 85602212 85602641 + 2 NA Intergenic Intergenic 53250 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 357-136 chr15 96840083 96840336 + 2 NA Intergenic L1MB3|LINE|L1 56774 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 480-146 chr2 69358598 69358943 + 2 NA intron (NM_002056, intron 5 of 18) MER3|DNA|hAT-Charlie 28457 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 450-290 chr8 4655232 4655648 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 339474 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 461-57 chr12 21490733 21491101 + 2 NA intron (NM_002907, intron 3 of 14) intron (NM_002907, intron 3 of 14) 10718 NM_002907 5965 Hs.235069 NM_002907 ENSG00000004700 RECQL RECQL1|RecQ1 RecQ like helicase protein-coding 495-129 chr20 4692597 4693079 + 2 NA intron (NM_001080123, intron 1 of 1) intron (NM_001080123, intron 1 of 1) 6382 NM_183079 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 509-121 chr2 144307272 144307582 + 2 NA intron (NM_001354354, intron 1 of 12) L1ME1|LINE|L1 -12114 NM_001354361 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 304-403 chr5 8817036 8817216 + 2 NA Intergenic Intergenic -22606 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 294-121 chr14 66306244 66306437 + 2 NA Intergenic Intergenic -180031 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 514 chr1 14331255 14331622 + 2 NA Intergenic Intergenic 88535 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 441-128 chr2 80872802 80873169 + 2 NA Intergenic Intergenic 559606 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 195-143 chr3 68322158 68322315 + 2 NA intron (NM_001252216, intron 2 of 4) Charlie16a|DNA|hAT-Charlie -178401 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 303-508 chrX 96266090 96266252 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 71731 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 228-149 chr2 6656898 6657049 + 2 NA Intergenic L2b|LINE|L2 -6454 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 303-334 chr4 167193124 167193338 + 2 NA intron (NM_001204352, intron 2 of 11) L1MA9|LINE|L1 41195 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 250-40 chr10 57891849 57892046 + 2 NA Intergenic L2b|LINE|L2 375947 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 221-194 chr3 99634856 99635022 + 2 NA Intergenic Intergenic -3655 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 1127 chr17 68717191 68718034 + 2 NA Intergenic L1M5|LINE|L1 89458 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 403-170 chr2 191564106 191564322 + 2 NA Intergenic Intergenic -113858 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 297-180 chr18 4222203 4222351 + 2 NA intron (NM_001242761, intron 1 of 11) L2|LINE|L2 -42325 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 304-157 chr15 56609749 56609986 + 2 NA Intergenic L1MB4|LINE|L1 124219 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 325-564 chr8 141905219 141905525 + 2 NA Intergenic Intergenic -119059 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 313-545 chr8 137687589 137687823 + 2 NA Intergenic Intergenic -274118 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 370-32 chr10 5542316 5542643 + 2 NA Intergenic L1MD|LINE|L1 -16233 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 683-38 chr2 122295286 122295883 + 2 NA Intergenic Intergenic 539933 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 314-478 chr5 117403564 117403795 + 2 NA Intergenic L1M8|LINE|L1 -11833 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 336-231 chr18 63086416 63086695 + 2 NA Intergenic Intergenic 232825 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 319-552 chr8 130840613 130840918 + 2 NA intron (NM_001115, intron 11 of 17) intron (NM_001115, intron 11 of 17) 200144 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 352-411 chr5 39517245 39517543 + 2 NA Intergenic MIR3|SINE|MIR -3037 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 704-30 chr16 73117609 73118103 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 25507 NR_027756 283902 Hs.382776 NM_001101347 ENSG00000260880 HCCAT5 FJ222407|HTA hepatocellular carcinoma associated transcript 5 ncRNA 282-378 chr5 72735333 72735575 + 2 NA Intergenic L1PA15|LINE|L1 -74785 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 280-287 chr4 63293181 63293419 + 2 NA Intergenic Intergenic 1116150 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 292-210 chr2 44893752 44893984 + 2 NA Intergenic Intergenic 45020 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 326-244 chr2 76614218 76614408 + 2 NA Intergenic L2|LINE|L2 -371652 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 297-251 chr2 230429712 230429860 + 2 NA intron (NM_001080391, intron 2 of 28) L1ME3G|LINE|L1 13030 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 471-221 chr5 179086739 179086997 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie 26495 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 624-21 chr11 45686777 45687176 + 2 NA Intergenic Intergenic 4800 NR_106976 102465691 NR_106976 ENSG00000276639 MIR7154 hsa-mir-7154 microRNA 7154 ncRNA 312-450 chr6 56215730 56216033 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 31699 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 590-16 chr10 53915329 53915698 + 2 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -570717 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 322-47 chr1 244421315 244421552 + 2 NA intron (NM_001365073, intron 7 of 12) intron (NM_001365073, intron 7 of 12) 30476 NM_001126 159 Hs.498313 NM_001126 ENSG00000035687 ADSS ADEH|ADSS 2|ADSS2 adenylosuccinate synthase protein-coding 314-575 chr8 107094973 107095158 + 2 NA Intergenic Intergenic 241450 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 307-450 chr7 53042452 53042732 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 6959 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 120-20 chr15 98274979 98275060 + 2 NA Intergenic Intergenic 56539 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 359-97 chr11 92806329 92806540 + 2 NA exon (NM_001367949, exon 12 of 28) exon (NM_001367949, exon 12 of 28) 109194 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 319-556 chr8 133667375 133667629 + 2 NA intron (NR_134462, intron 1 of 2) intron (NR_134462, intron 1 of 2) 16564 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 211-120 chr18 32933514 32933717 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -160592 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 570-142 chr4 9872511 9872913 + 2 NA intron (NM_001001290, intron 11 of 12) intron (NM_001001290, intron 11 of 12) 91078 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 243-69 chr11 60320451 60320623 + 2 NA Intergenic L1MA9|LINE|L1 -14345 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 246-352 chr6 75021954 75022139 + 2 NA Intergenic Intergenic 106736 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 580-136 chr4 56078189 56078639 + 2 NA Intergenic AluJo|SINE|Alu -91781 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 342-269 chr2 223767189 223767529 + 2 NA intron (NR_110906, intron 2 of 3) intron (NR_110906, intron 2 of 3) 70223 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 545-10 chr1 174547088 174547482 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 99321 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 426-168 chr21 29613152 29613465 + 2 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 17268 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 288-380 chr6 129404683 129404908 + 2 NA intron (NM_000426, intron 40 of 64) intron (NM_000426, intron 40 of 64) 305382 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 466-124 chr2 54284198 54284648 + 2 NA intron (NM_001320589, intron 4 of 4) intron (NM_001320589, intron 4 of 4) -28194 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 236-236 chr3 108267001 108267214 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -29383 NM_001282556 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 484-105 chr19 36385742 36386078 + 2 NA intron (NM_001321918, intron 4 of 4) MSTD-int|LTR|ERVL-MaLR -6709 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 427-13 chr1 181881868 181882188 + 2 NA Intergenic L1MD|LINE|L1 179684 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 349-179 chr15 54558142 54558454 + 2 NA intron (NM_001329919, intron 28 of 31) MIRc|SINE|MIR -498449 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 311-160 chr15 61907533 61907832 + 2 NA intron (NM_001018088, intron 65 of 81) L4_B_Mam|LINE|RTE-X 152765 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 287-381 chr7 53410772 53410965 + 2 NA Intergenic Intergenic 375235 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 334-406 chr5 6253016 6253270 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 84149 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 423-203 chr4 97168527 97168943 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -198191 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 373-141 chr16 19819514 19819840 + 2 NA intron (NR_130968, intron 7 of 8) intron (NR_130968, intron 7 of 8) 65171 NM_016235 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 663-74 chr4 57751488 57751914 + 2 NA Intergenic MLT2D|LTR|ERVL 325829 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 328-550 chr7 144776485 144776677 + 2 NA intron (NM_001350887, intron 1 of 6) intron (NM_001350887, intron 1 of 6) -37683 NM_001350884 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 360-451 chr8 46368161 46368474 + 2 NA Intergenic ALR/Alpha|Satellite|centr 249326 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 274-370 chr8 8334713 8334916 + 2 NA intron (NR_163138, intron 5 of 6) AluSz|SINE|Alu 51430 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 160-32 chr16 68729385 68729507 + 2 NA Intergenic L1MA10|LINE|L1 -7846 NM_001317186 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 223-166 chr2 153156907 153157090 + 2 NA Intergenic Intergenic 321764 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 249-128 chr15 60958449 60958681 + 2 NA intron (NM_134261, intron 1 of 10) MIRb|SINE|MIR 270737 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 300-318 chr4 54092568 54092839 + 2 NA Intergenic Intergenic -7460 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 477-107 chr16 26334894 26335219 + 2 NA Intergenic Intergenic 309819 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 240-394 chr7 36820286 36820440 + 2 NA Intergenic L1MB5|LINE|L1 -95814 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 296-55 chr10 75345657 75345852 + 2 NA intron (NR_038226, intron 2 of 3) MamGypLTR3a|LTR|Gypsy 49371 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 197-177 chr5 129545316 129545508 + 2 NA intron (NM_133638, intron 6 of 22) L1MEd|LINE|L1 -84723 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 430-35 chr10 74996603 74996966 + 2 NA intron (NM_001370144, intron 11 of 15) AluSc8|SINE|Alu -24949 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 277-331 chr5 81079129 81079347 + 2 NA intron (NM_006909, intron 5 of 26) intron (NM_006909, intron 5 of 26) -118331 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 202-258 chr8 108624572 108624696 + 2 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 162960 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 342-452 chr6 48969692 48969878 + 2 NA Intergenic Intergenic 493468 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 212-311 chr7 117349817 117349995 + 2 NA Intergenic L1MD3|LINE|L1 -26848 NR_024047 7472 Hs.567356 NM_003391 ENSG00000105989 WNT2 INT1L1|IRP Wnt family member 2 protein-coding 286-15 chr1 82744243 82744432 + 2 NA Intergenic L1M6|LINE|L1 -158846 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 371-130 chr16 51080236 51080441 + 2 NA intron (NR_039672, intron 2 of 6) LTR107_Mam|LTR|LTR 62580 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 220-84 chr12 39695190 39695375 + 2 NA intron (NM_001031748, intron 11 of 12) L1M1|LINE|L1 69099 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 291-377 chr6 50596614 50596789 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -116843 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 284-101 chr12 133187854 133188102 + 2 NA exon (NM_001165883, exon 3 of 4) exon (NM_001165883, exon 3 of 4) 6483 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 466-172 chr3 36246640 36246970 + 2 NA Intergenic Intergenic -133682 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 179-96 chr5 91694388 91694523 + 2 NA Intergenic Intergenic -311138 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 689-15 chr11 10873391 10873887 + 2 NA intron (NR_034137, intron 2 of 2) L1M2|LINE|L1 15422 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 349-207 chr17 58484314 58484580 + 2 NA intron (NM_001080439, intron 1 of 5) intron (NM_001080439, intron 1 of 5) 3961 NM_001080439 124535 Hs.380061 NM_001080439 ENSG00000176160 HSF5 HSF 5|HSTF 5 heat shock transcription factor 5 protein-coding 203-115 chr2 100499440 100499618 + 2 NA Intergenic L1PA16|LINE|L1 29047 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 203-133 chr20 42614842 42615000 + 2 NA intron (NM_133170, intron 7 of 31) (T)n|Simple_repeat|Simple_repeat -70562 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 334-475 chr6 140257159 140257436 + 2 NA Intergenic Intergenic 52045 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 115-31 chr4 42269331 42269398 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -116709 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 185-151 chr4 113220369 113220484 + 2 NA intron (NM_001354275, intron 5 of 43) MLT1K|LTR|ERVL-MaLR 68144 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 373-106 chr14 38261788 38262016 + 2 NA Intergenic L1P4a|LINE|L1 -5809 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 355-181 chr16 49162087 49162279 + 2 NA Intergenic Intergenic 119655 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 494-42 chr11 104022529 104022891 + 2 NA intron (NM_025208, intron 1 of 6) (TA)n|Simple_repeat|Simple_repeat -13930 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 323-287 chr2 218159323 218159610 + 2 NA Intergenic L1MEd|LINE|L1 7496 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 218-118 chr16 61076000 61076150 + 2 NA Intergenic Intergenic -20309 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 228-378 chrUn_KI270756v1 4335 4542 + 2 NA NA (CCATTCCATT)n|Simple_repeat|Simple_repeat NA NA 311-478 chr7 89251516 89251692 + 2 NA intron (NM_181646, intron 2 of 3) L1PA16|LINE|L1 -455867 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 380-173 chr2 33113813 33114157 + 2 NA intron (NM_206943, intron 4 of 33) AluSz|SINE|Alu -20612 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 321-524 chr7 45368360 45368575 + 2 NA Intergenic L1MA7|LINE|L1 -205673 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 255-398 chr7 114824145 114824302 + 2 NA Intergenic Intergenic -97931 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 321-218 chr16 61456578 61456769 + 2 NA Intergenic L1M4|LINE|L1 -400907 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 283-421 chr7 53754168 53754358 + 2 NA intron (NR_038371, intron 4 of 5) MLT1A-int|LTR|ERVL-MaLR 57668 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 372-129 chr13 74804669 74804952 + 2 NA Intergenic HERVL-int|LTR|ERVL 251967 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 375-305 chr4 129800175 129800485 + 2 NA intron (NR_151713, intron 2 of 16) MLT1J-int|LTR|ERVL-MaLR 28711 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 298-186 chr19 12528262 12528475 + 2 NA intron (NM_144976, intron 2 of 3) intron (NM_144976, intron 2 of 3) 23114 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 463-64 chr11 109578961 109579238 + 2 NA Intergenic Intergenic 156909 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 515-236 chr6 93778113 93778519 + 2 NA Intergenic AluSp|SINE|Alu 60013 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 292-106 chr12 61683285 61683459 + 2 NA Intergenic L1PB|LINE|L1 509467 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 228-332 chr8 33029075 33029246 + 2 NA Intergenic L1MA5|LINE|L1 307325 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 278-347 chr5 93123174 93123386 + 2 NA Intergenic Intergenic 448063 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 344-342 chr4 4789783 4790026 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 28144 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 281-20 chr1 189843828 189843971 + 2 NA Intergenic L1MA8|LINE|L1 632111 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 353-44 chr1 242419808 242420121 + 2 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) 29504 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 371-274 chr4 55281786 55282050 + 2 NA Intergenic L1MA9|LINE|L1 -64324 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 450-44 chr11 8293513 8293935 + 2 NA Intergenic MIR|SINE|MIR -24937 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 373-408 chr8 80392003 80392322 + 2 NA Intergenic L2|LINE|L2 -93431 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 234-180 chr2 116632927 116633112 + 2 NA Intergenic Intergenic -1181672 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 499-238 chr7 13424523 13424837 + 2 NA Intergenic L1M4|LINE|L1 561834 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 250-361 chr5 131253393 131253593 + 2 NA Intergenic AluSp|SINE|Alu -10516 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 494-143 chr2 194464667 194465108 + 2 NA Intergenic MER119|DNA|hAT-Charlie 120618 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 153-85 chr6 80789258 80789362 + 2 NA Intergenic Intergenic 682639 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 296-209 chr2 22498202 22498365 + 2 NA Intergenic Intergenic -38196 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 239-162 chr2 20859155 20859332 + 2 NA Intergenic Intergenic -36113 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 290-293 chr3 147956655 147956804 + 2 NA Intergenic Intergenic -121430 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 335-442 chr5 149082045 149082308 + 2 NA intron (NR_122044, intron 2 of 2) L1MA9|LINE|L1 18859 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 239-42 chr10 82679832 82680010 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -447001 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 253-369 chr6 162198967 162199211 + 2 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -528043 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 310-89 chr11 106622974 106623196 + 2 NA Intergenic MIRb|SINE|MIR 371678 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 228-79 chr12 119610795 119611010 + 2 NA intron (NM_001136534, intron 1 of 2) L1MB7|LINE|L1 17128 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 232-61 chr11 92537817 92537997 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 185811 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 724-31 chr2 6318966 6319392 + 2 NA Intergenic L1PA6|LINE|L1 56243 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 318-77 chr10 82877952 82878189 + 2 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -645150 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 437-126 chr2 28571817 28572060 + 2 NA intron (NR_138141, intron 1 of 35) L1MB8|LINE|L1 5581 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 225-158 chr2 81389455 81389616 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 77411 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 524-176 chr4 72662203 72662590 + 2 NA Intergenic Intergenic -93175 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 316-212 chr17 69055071 69055302 + 2 NA intron (NM_080283, intron 1 of 38) L1MCa|LINE|L1 5741 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 483-33 chr10 130895673 130896076 + 2 NA Intergenic Intergenic 66794 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 265-402 chr8 121989675 121989861 + 2 NA Intergenic L1MA3|LINE|L1 -348328 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 428-307 chr8 123491251 123491571 + 2 NA Intergenic AluJr|SINE|Alu 40732 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 229-159 chr18 40150200 40150365 + 2 NA Intergenic Intergenic 83996 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 310-186 chr17 56386823 56387020 + 2 NA intron (NM_001370326, intron 8 of 20) intron (NM_001370326, intron 8 of 20) -206778 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 258-45 chr10 26462288 26462509 + 2 NA intron (NM_019043, intron 2 of 14) L1M5|LINE|L1 24057 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 303-213 chr2 76082614 76082827 + 2 NA Intergenic Intergenic -371805 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 446-159 chr2 161258423 161258860 + 2 NA Intergenic AluSz|SINE|Alu -3998 NR_110593 101929512 Hs.666488 NR_110593 LOC101929512 - uncharacterized LOC101929512 ncRNA 446-123 chr17 76548058 76548349 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 8159 NM_001077620 768206 Hs.634380 NM_001077620 ENSG00000214140 PRCD RP36 photoreceptor disc component protein-coding 294-467 chr8 79509169 79509453 + 2 NA Intergenic Intergenic -101806 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 380-319 chr5 143268196 143268436 + 2 NA Intergenic L1MC1|LINE|L1 75816 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 681-68 chr5 124243497 124244014 + 2 NA intron (NR_125774, intron 4 of 5) THE1C-int|LTR|ERVL-MaLR 194765 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 453-264 chr7 91747982 91748335 + 2 NA Intergenic L1M2|LINE|L1 132544 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 458-43 chr11 100062130 100062399 + 2 NA intron (NM_001243270, intron 9 of 23) intron (NM_001243270, intron 9 of 23) 506119 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 229-407 chr9 15506293 15506474 + 2 NA intron (NM_001317900, intron 3 of 10) intron (NM_001317900, intron 3 of 10) 3906 NM_021144 11168 Hs.658434 NM_021144 ENSG00000164985 PSIP1 DFS70|LEDGF|PAIP|PSIP2|p52|p75 PC4 and SFRS1 interacting protein 1 protein-coding 200-142 chr2 181875640 181875764 + 2 NA Intergenic MER53|DNA|hAT -16028 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 436-49 chr11 71124774 71125178 + 2 NA intron (NM_012309, intron 2 of 24) Tigger1|DNA|TcMar-Tigger 99820 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 263-44 chr10 44428159 44428414 + 2 NA Intergenic Intergenic -43189 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 222-394 chrX 76646245 76646434 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 218629 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 423-21 chr10 18747832 18748167 + 2 NA Intergenic Intergenic 88568 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 440-242 chr8 60623164 60623449 + 2 NA 3' UTR (NM_001242644, exon 7 of 7) 3' UTR (NM_001242644, exon 7 of 7) -55434 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 513-187 chr3 96719780 96720236 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -94586 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 269-130 chr15 26227549 26227764 + 2 NA Intergenic L1MEc|LINE|L1 111843 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 488-89 chr15 39411636 39411960 + 2 NA Intergenic MIR3|SINE|MIR 161129 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 752-77 chr8 131852249 131852709 + 2 NA Intergenic AluSx|SINE|Alu -51614 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 388-166 chr2 112344589 112344910 + 2 NA Intergenic Intergenic 69152 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 320-92 chr11 83314783 83315039 + 2 NA Intergenic MIRc|SINE|MIR -28504 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 221-6 chr1 75547173 75547326 + 2 NA intron (NM_152697, intron 1 of 23) HSMAR2|DNA|TcMar-Mariner 63865 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 222-319 chr6 39935873 39936026 + 2 NA Intergenic Intergenic -1487 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 253-397 chr7 128820892 128821081 + 2 NA intron (NM_001367763, intron 12 of 12) L3|LINE|CR1 -9420 NM_001127487 2318 Hs.58414 NM_001458 ENSG00000128591 FLNC ABP-280|ABP280A|ABPA|ABPL|CMH26|FLN2|MFM5|MPD4|RCM5 filamin C protein-coding 209-63 chr11 129901342 129901490 + 2 NA 3' UTR (NM_001367898, exon 17 of 17) 3' UTR (NM_001367898, exon 17 of 17) -5838 NM_001143835 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 272-447 chr8 78987795 78987984 + 2 NA Intergenic L1M2|LINE|L1 150360 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 249-332 chr5 53416301 53416448 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -64255 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 146-52 chr22 28272813 28272926 + 2 NA intron (NM_001145418, intron 5 of 22) L1MEg|LINE|L1 -187000 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 244-228 chr3 51107625 51107796 + 2 NA intron (NM_004947, intron 9 of 52) L1PREC2|LINE|L1 -277581 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 404-299 chr7 123420678 123420958 + 2 NA Intergenic L1MCc|LINE|L1 112130 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 394-300 chr7 33350061 33350345 + 2 NA intron (NM_001348040, intron 13 of 20) L2a|LINE|L2 220639 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 366-244 chr2 240632891 240633167 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 7784 NM_005301 2859 Hs.112218 NM_005301 ENSG00000178623 GPR35 - G protein-coupled receptor 35 protein-coding 250-55 chr10 117141755 117141939 + 2 NA Intergenic Intergenic -3577 NM_001112704 11023 Hs.441536 NM_199131 ENSG00000148704 VAX1 MCOPS11 ventral anterior homeobox 1 protein-coding 158-54 chr2 107941738 107941893 + 2 NA Intergenic L2c|LINE|L2 -44709 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 336-151 chr13 81680363 81680632 + 2 NA Intergenic Intergenic -453514 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 353-323 chr3 58780656 58780907 + 2 NA intron (NM_001351532, intron 14 of 14) L1MA4A|LINE|L1 -43690 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 611-124 chr5 128848767 128849200 + 2 NA Intergenic L1MA1|LINE|L1 -116144 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 362-464 chr9 89532716 89533068 + 2 NA Intergenic MLT2B3|LTR|ERVL -34919 NM_001371194 445-204 chr4 100601131 100601572 + 2 NA Intergenic Intergenic 73762 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 200-255 chr7 52179721 52179901 + 2 NA Intergenic L1M6|LINE|L1 -786555 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 433-52 chr11 94289836 94290156 + 2 NA Intergenic L1PB1|LINE|L1 -15641 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 315-381 chr5 55795588 55795793 + 2 NA intron (NM_024415, intron 17 of 21) AluJb|SINE|Alu 28805 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 458-19 chr10 39389589 39389913 + 2 NA Intergenic ALR/Alpha|Satellite|centr 693155 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 356-494 chr8 137596831 137597130 + 2 NA Intergenic L1MC5|LINE|L1 -183392 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 611-44 chr15 25057777 25058223 + 2 NA intron (NR_146177, intron 26 of 147) intron (NR_146177, intron 26 of 147) 1141 NR_003324 100033421 NR_003324 ENSG00000206727 SNORD116-9 HBII-85-9 small nucleolar RNA, C/D box 116-9 snoRNA 128-79 chr8 110695348 110695418 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 332050 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 328-458 chr5 83351668 83351926 + 2 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -119877 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 290-437 chr7 136746301 136746541 + 2 NA Intergenic Intergenic -122231 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 523-67 chr12 118941346 118941688 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -40024 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 299-478 chr9 8120998 8121281 + 2 NA Intergenic L2b|LINE|L2 -321361 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 385-49 chr11 36064770 36065141 + 2 NA non-coding (NR_135064, exon 2 of 2) non-coding (NR_135064, exon 2 of 2) 12946 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 419-50 chr11 42139655 42139921 + 2 NA Intergenic Intergenic -54330 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 436-103 chr16 71210795 71211090 + 2 NA intron (NM_001198543, intron 1 of 18) L1MC5a|LINE|L1 19780 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 137-19 chr12 79682899 79682986 + 2 NA intron (NM_001354732, intron 2 of 6) intron (NM_001354732, intron 2 of 6) 7638 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 309-234 chr2 16108974 16109166 + 2 NA Intergenic Intergenic 58643 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 376-227 chr21 16816743 16816963 + 2 NA Intergenic Intergenic 226616 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 463-57 chr11 54806934 54807337 + 2 NA Intergenic ALR/Alpha|Satellite|centr 100303 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 282-118 chr13 85547649 85547819 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 184131 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 238-283 chr5 7626165 7626374 + 2 NA exon (NM_020546, exon 4 of 25) exon (NM_020546, exon 4 of 25) 224864 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 359-81 chr11 22196839 22197037 + 2 NA intron (NM_001142649, intron 1 of 21) intron (NM_001142649, intron 1 of 21) 3762 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 343-354 chr3 116534523 116534827 + 2 NA Intergenic Intergenic -17798 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 314-483 chr5 155901754 155901935 + 2 NA Intergenic MIRc|SINE|MIR -424913 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 318-93 chr11 7370029 7370267 + 2 NA intron (NM_175733, intron 3 of 6) L1PB1|LINE|L1 95687 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 481-62 chr12 5862569 5862906 + 2 NA intron (NM_001278596, intron 3 of 25) THE1C|LTR|ERVL-MaLR 82522 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 262-43 chr10 37831686 37831867 + 2 NA exon (NM_001352470, exon 6 of 6) exon (NM_001352470, exon 6 of 6) 25834 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 535-252 chr8 136521197 136521558 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -9421 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 241-173 chr2 4582229 4582428 + 2 NA Intergenic Intergenic 73894 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 247-357 chr6 49131735 49131873 + 2 NA Intergenic Intergenic 331449 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 347-76 chr11 77226832 77227039 + 2 NA intron (NM_182833, intron 16 of 16) intron (NM_182833, intron 16 of 16) 74731 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 417-63 chr12 83840128 83840422 + 2 NA Intergenic Intergenic 1072524 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 176-70 chr20 57993588 57993745 + 2 NA Intergenic Intergenic -10238 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 303-218 chr2 123018669 123018854 + 2 NA Intergenic MIRb|SINE|MIR 54720 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 268-329 chr5 180004319 180004526 + 2 NA intron (NM_001280801, intron 3 of 7) MIR3|SINE|MIR 10975 NR_029885 442908 NR_029885 ENSG00000198995 MIR340 MIRN340|hsa-mir-340|mir-340 microRNA 340 ncRNA 329-581 chr8 104646683 104646894 + 2 NA Intergenic Intergenic -57764 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 243-471 chr9 27664663 27664862 + 2 NA Intergenic MIRc|SINE|MIR -90896 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 703-22 chr11 118288378 118288895 + 2 NA Intergenic AluSz|SINE|Alu -15944 NM_000733 916 Hs.3003 NM_000733 ENSG00000198851 CD3E IMD18|T3E|TCRE CD3e molecule protein-coding 576-34 chr12 70815696 70816147 + 2 NA intron (NM_002849, intron 2 of 13) intron (NM_002849, intron 2 of 13) -27001 NM_001207015 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 524-7 chr1 72152366 72152802 + 2 NA intron (NM_173808, intron 1 of 6) L1PA16|LINE|L1 129955 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 270-110 chr14 62826486 62826699 + 2 NA intron (NM_139318, intron 8 of 10) L1MC4|LINE|L1 218866 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 485-101 chr17 8918933 8919217 + 2 NA intron (NM_001142633, intron 1 of 18) L1MC4a|LINE|L1 -6558 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 717-24 chr12 30078416 30078789 + 2 NA Intergenic Intergenic -293843 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 361-282 chr3 54753603 54753936 + 2 NA intron (NM_018398, intron 12 of 37) L1MA8|LINE|L1 -113912 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 320-156 chr14 66277536 66277766 + 2 NA Intergenic L1MB1|LINE|L1 -208720 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 241-140 chr16 90041692 90041842 + 2 NA intron (NM_001286205, intron 9 of 10) AluSg7|SINE|Alu 5858 NR_027335 100130015 Hs.431792 NR_027335 ENSG00000222019 URAHP URAH urate (hydroxyiso-) hydrolase, pseudogene pseudo 412-70 chr12 41846704 41847057 + 2 NA Intergenic UCON48|Unknown|Unknown 82691 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 290-341 chr5 54335033 54335233 + 2 NA intron (NR_126379, intron 1 of 4) L1M2|LINE|L1 14189 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 272-23 chr1 187035456 187035602 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -57313 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 205-124 chr18 13587560 13587750 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -23459 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 344-147 chr14 88259154 88259397 + 2 NA intron (NM_138317, intron 2 of 6) intron (NM_138317, intron 2 of 6) 11636 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 257-165 chr19 24290006 24290226 + 2 NA Intergenic ALR/Alpha|Satellite|centr -126669 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 237-70 chr12 30868010 30868227 + 2 NA Intergenic L1ME3G|LINE|L1 -58630 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 403-112 chr15 49770868 49771255 + 2 NA Intergenic Intergenic 150013 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 284-441 chr9 76016841 76017058 + 2 NA intron (NR_120409, intron 3 of 19) intron (NR_120409, intron 3 of 19) 126276 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 186-41 chr13 39844611 39844753 + 2 NA Intergenic Intergenic -180547 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 408-52 chr10 127863661 127864014 + 2 NA Intergenic Intergenic 29104 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 626-83 chr20 60880081 60880577 + 2 NA Intergenic L1PREC2|LINE|L1 -198735 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 207-61 chr11 133789353 133789553 + 2 NA intron (NR_120444, intron 2 of 2) intron (NR_120444, intron 2 of 2) 20923 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 394-95 chr13 52066197 52066447 + 2 NA intron (NM_199289, intron 21 of 21) L1ME4a|LINE|L1 41631 NM_021645 9724 Hs.512963 NM_021645 ENSG00000253797 UTP14C 2700066J21Rik|KIAA0266|UTP14B UTP14C small subunit processome component protein-coding 441-194 chr5 23685686 23686085 + 2 NA Intergenic Intergenic 178230 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 274-304 chr5 31796172 31796413 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 139867 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 308-543 chr9 119760785 119760979 + 2 NA Intergenic MLT2C1|LTR|ERVL -174178 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 325-361 chr3 120050857 120051037 + 2 NA intron (NM_002093, intron 1 of 11) L2b|LINE|L2 33701 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 174-34 chr13 34266161 34266267 + 2 NA Intergenic Intergenic -81829 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 224-330 chr8 99844134 99844313 + 2 NA intron (NM_017890, intron 54 of 61) MLT1A0|LTR|ERVL-MaLR 49484 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 260-426 chr8 46532242 46532386 + 2 NA Intergenic ALR/Alpha|Satellite|centr 85329 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 362-283 chr3 133866555 133866883 + 2 NA intron (NM_016577, intron 1 of 7) intron (NM_016577, intron 1 of 7) 29128 NM_001363953 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 251-426 chr9 115161504 115161661 + 2 NA intron (NR_163556, intron 1 of 7) intron (NR_163556, intron 1 of 7) 19764 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 306-39 chr1 191194353 191194592 + 2 NA Intergenic L1MEg|LINE|L1 34026 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 359-95 chr11 91459273 91459598 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -590233 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 306-274 chr20 10827132 10827386 + 2 NA Intergenic MIR|SINE|MIR 74169 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 584-18 chr10 62342185 62342633 + 2 NA intron (NR_104162, intron 3 of 3) MER41-int|LTR|ERV1 -31748 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 211-296 chr8 63914578 63914759 + 2 NA intron (NR_125826, intron 4 of 4) L1ME3Cz|LINE|L1 145238 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 374-406 chr8 139132403 139132599 + 2 NA Intergenic MIR3|SINE|MIR -218460 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 660 chr1 60049320 60049819 + 2 NA intron (NM_152377, intron 3 of 11) L1MC5a|LINE|L1 24201 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 236-159 chr2 5762790 5762975 + 2 NA Intergenic MER97a|DNA|hAT-Tip100 49714 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 352-321 chr3 77433216 77433408 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 335300 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 319-457 chr6 62945310 62945613 + 2 NA Intergenic Intergenic 374516 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 254-445 chr9 118309980 118310129 + 2 NA Intergenic MIRb|SINE|MIR -369617 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 269-365 chr6 155322194 155322407 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -7816 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 379-200 chr21 17310577 17310881 + 2 NA Intergenic L1PA7|LINE|L1 -128161 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 376-55 chr10 82123262 82123483 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 109548 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 291-364 chr5 115955701 115955948 + 2 NA promoter-TSS (NR_157226) promoter-TSS (NR_157226) -747 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 332-435 chr5 152926003 152926240 + 2 NA intron (NR_109877, intron 2 of 4) MSTA-int|LTR|ERVL-MaLR 46228 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 355-511 chr8 127336078 127336323 + 2 NA intron (NR_117099, intron 2 of 3) MIRb|SINE|MIR -64199 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 653-132 chr9 127848389 127848937 + 2 NA intron (NM_001114753, intron 1 of 14) L2b|LINE|L2 -1496 NM_001278138 2022 Hs.76753 NM_000118 ENSG00000106991 ENG END|HHT1|ORW1 endoglin protein-coding 689-27 chr13 88154937 88155468 + 2 NA intron (NR_131919, intron 1 of 4) intron (NR_131919, intron 1 of 4) 12335 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 285-63 chr11 62248037 62248189 + 2 NA Intergenic AluSc|SINE|Alu 5874 NM_006551 10647 Hs.204096 NM_006551 ENSG00000124935 SCGB1D2 LIPB|LPHB|LPNB secretoglobin family 1D member 2 protein-coding 305-399 chr4 93862534 93862758 + 2 NA Intergenic L1MA5A|LINE|L1 33893 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 734-71 chr7 45209859 45210263 + 2 NA Intergenic AluJo|SINE|Alu 52270 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 321-551 chr8 78328560 78328730 + 2 NA Intergenic Intergenic -187695 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 400-363 chr9 31641418 31641730 + 2 NA Intergenic Intergenic -260084 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 170-16 chr10 8737974 8738130 + 2 NA Intergenic Intergenic -143661 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 445-215 chr5 21088339 21088630 + 2 NA Intergenic LTR34|LTR|ERV1 -370996 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 483-228 chr6 61189652 61189999 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -384305 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 291-329 chr4 113157170 113157380 + 2 NA intron (NM_001354241, intron 2 of 45) intron (NM_001354241, intron 2 of 45) 4993 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 274-290 chr4 95037587 95037829 + 2 NA intron (NM_001256792, intron 1 of 10) intron (NM_001256792, intron 1 of 10) -13969 NM_001256793 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 518-249 chr5 179923014 179923384 + 2 NA Intergenic L1ME1|LINE|L1 -15302 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 192-178 chr6 102857582 102857724 + 2 NA Intergenic Intergenic 1458668 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 643-36 chr14 92610669 92611033 + 2 NA intron (NM_024832, intron 3 of 9) intron (NM_024832, intron 3 of 9) 34617 NM_001319987 79890 Hs.326822 NM_024832 ENSG00000100599 RIN3 - Ras and Rab interactor 3 protein-coding 311-405 chr5 43260384 43260614 + 2 NA intron (NR_072980, intron 2 of 3) L1PB3|LINE|L1 52682 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 322-316 chr22 49546073 49546362 + 2 NA intron (NR_110523, intron 1 of 4) MLT1F2|LTR|ERVL-MaLR -2751 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 260-268 chr3 59681190 59681368 + 2 NA Intergenic Intergenic -22782 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 696-69 chr3 33232725 33233119 + 2 NA Intergenic Intergenic -14112 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 201-198 chr5 66564336 66564509 + 2 NA Intergenic Intergenic -31971 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 271-173 chr18 6230409 6230664 + 2 NA intron (NM_001365769, intron 10 of 16) L1PA15|LINE|L1 -26208 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 227-289 chr5 80997330 80997515 + 2 NA intron (NM_006909, intron 1 of 26) intron (NM_006909, intron 1 of 26) -36515 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 297-242 chr2 188687975 188688133 + 2 NA Intergenic L1PA13|LINE|L1 102069 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 214-218 chr3 136280001 136280213 + 2 NA intron (NM_000532, intron 5 of 14) L1M4|LINE|L1 29767 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 172-11 chr10 25664043 25664174 + 2 NA intron (NR_108067, intron 2 of 4) L1ME1|LINE|L1 12396 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 351-261 chr20 33238540 33238733 + 2 NA intron (NM_001243193, intron 3 of 8) intron (NM_001243193, intron 3 of 8) 2640 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 439-81 chr13 27945739 27945992 + 2 NA Intergenic Intergenic -7661 NR_135254 100132234 Hs.197435 NR_135254 ENSG00000260704 LINC00543 - long intergenic non-protein coding RNA 543 ncRNA 235-91 chr13 44461908 44462125 + 2 NA intron (NM_183422, intron 1 of 2) intron (NM_183422, intron 1 of 2) 12285 NM_001243798 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 378-464 chrX 55259517 55259814 + 2 NA intron (NM_001017931, intron 4 of 4) intron (NM_001017931, intron 4 of 4) 5181 NM_001171252 139793 Hs.163473 NM_001017931 ENSG00000204279 PAGE3 CT16.6|GAGED1|PAGE-3 PAGE family member 3 protein-coding 280-340 chr5 176173252 176173488 + 2 NA intron (NR_036494, intron 14 of 25) HAL1M8|LINE|L1 25925 NR_036494 643201 Hs.390285 NR_036494 ENSG00000248596 LOC643201 - centrosomal protein 192kDa pseudogene pseudo 481-144 chr2 70387900 70388244 + 2 NA Intergenic Intergenic -86005 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 239-138 chr18 2004034 2004229 + 2 NA Intergenic L1ME3|LINE|L1 567374 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 363-305 chr3 177723470 177723694 + 2 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -93283 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 477-140 chr2 19160522 19160991 + 2 NA Intergenic L1MA9|LINE|L1 -133785 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 302-146 chr15 64325803 64325957 + 2 NA intron (NM_001329606, intron 1 of 11) intron (NM_001329606, intron 1 of 11) 30293 NM_001329605 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 359-190 chr17 71960011 71960231 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 65858 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 143-91 chr9 92473073 92473159 + 2 NA intron (NM_017680, intron 3 of 8) intron (NM_017680, intron 3 of 8) 9390 NM_001193335 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 289-12 chr1 97470973 97471237 + 2 NA intron (NM_000110, intron 13 of 22) intron (NM_000110, intron 13 of 22) -325816 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 752-7 chr11 69827293 69827951 + 2 NA Intergenic Intergenic -8206 NM_005247 2248 Hs.37092 NM_005247 ENSG00000186895 FGF3 HBGF-3|INT2 fibroblast growth factor 3 protein-coding 400-46 chr11 15305000 15305304 + 2 NA Intergenic L2b|LINE|L2 156050 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 215-23 chr10 7373222 7373397 + 2 NA intron (NM_001029880, intron 2 of 20) MSTA1|LTR|ERVL-MaLR 36032 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 395-365 chr9 134311133 134311482 + 2 NA Intergenic L1M5|LINE|L1 -15148 NM_002957 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 330-400 chr5 6010118 6010283 + 2 NA Intergenic Intergenic 327092 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 255-376 chr7 10840175 10840345 + 2 NA Intergenic Intergenic -60316 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 347-214 chr2 56763555 56763777 + 2 NA Intergenic Intergenic -577896 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 244-207 chr21 29662087 29662260 + 2 NA intron (NM_000830, intron 4 of 16) intron (NM_000830, intron 4 of 16) 66133 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 618-136 chr8 132228225 132228606 + 2 NA intron (NM_004519, intron 1 of 14) L2b|LINE|L2 -123150 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 302-182 chr18 22948825 22949015 + 2 NA intron (NM_002894, intron 3 of 18) intron (NM_002894, intron 3 of 18) 15044 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 513-20 chr10 2245603 2245915 + 2 NA Intergenic Intergenic 69315 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 545-158 chr4 43431465 43431799 + 2 NA Intergenic Intergenic 60911 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 281-108 chr13 96855105 96855324 + 2 NA Intergenic Intergenic 128958 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 621-15 chr10 62197219 62197679 + 2 NA 3' UTR (NM_145307, exon 12 of 12) 3' UTR (NM_145307, exon 12 of 12) 71395 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 422-11 chr1 106684169 106684551 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -133879 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 154-63 chr21 30550220 30550316 + 2 NA Intergenic L1PA15|LINE|L1 -8404 NM_181612 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 311-11 chr1 73268030 73268299 + 2 NA Intergenic L1MD|LINE|L1 -38006 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 429-294 chr8 53308550 53308827 + 2 NA Intergenic Intergenic -56991 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 325-258 chr2 40593079 40593327 + 2 NA Intergenic LTR83|LTR|ERVL -80768 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 190-28 chr11 57927250 57927348 + 2 NA Intergenic L1MA4A|LINE|L1 -96582 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 369-35 chr10 43841726 43841958 + 2 NA Intergenic Intergenic -3464 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 325-32 chr1 187470453 187470668 + 2 NA intron (NR_132374, intron 2 of 2) (TG)n|Simple_repeat|Simple_repeat 26932 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 235-62 chr11 39582093 39582296 + 2 NA Intergenic Intergenic 710936 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 424-223 chr5 86386031 86386339 + 2 NA Intergenic Intergenic 103741 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 157-43 chr15 80330731 80330840 + 2 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 11020 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 187-144 chr5 167673657 167673803 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -81199 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 188-128 chr3 31429066 31429177 + 2 NA Intergenic L1MCa|LINE|L1 -103804 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 492-156 chr20 54930506 54930853 + 2 NA Intergenic LTR85b|LTR|Gypsy? 455086 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 355-547 chrX 103209822 103210091 + 2 NA Intergenic Intergenic -5136 NM_001127688 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 400-138 chr18 6583468 6583682 + 2 NA intron (NR_120518, intron 3 of 5) L1PA16|LINE|L1 72159 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 320-367 chr3 169989625 169989903 + 2 NA intron (NM_003262, intron 7 of 7) Tigger16a|DNA|TcMar-Tigger 22957 NM_003262 7095 Hs.744859 NM_003262 ENSG00000008952 SEC62 Dtrp1|HTP1|TLOC1|TP-1 SEC62 homolog, preprotein translocation factor protein-coding 174-8 chr1 190576038 190576170 + 2 NA Intergenic Intergenic -48786 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 241-135 chr16 73245539 73245751 + 2 NA Intergenic Intergenic -101198 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 201-7 chr1 78357775 78357935 + 2 NA intron (NR_027310, intron 4 of 5) L3|LINE|CR1 128256 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 263-65 chr11 15354572 15354748 + 2 NA Intergenic Intergenic 205558 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 360-154 chr16 26000053 26000263 + 2 NA intron (NM_006040, intron 1 of 1) MLT1K|LTR|ERVL-MaLR -25079 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 690-65 chr20 24203232 24203784 + 2 NA intron (NR_040102, intron 1 of 3) intron (NR_040102, intron 1 of 3) 3741 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 181-139 chr6 56729663 56729802 + 2 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -86843 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 350-296 chr22 24353097 24353401 + 2 NA intron (NM_015330, intron 11 of 16) L1MC4a|LINE|L1 11141 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 281-65 chr11 41441187 41441392 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 18347 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 519-144 chr3 46027606 46027992 + 2 NA promoter-TSS (NM_001024644) promoter-TSS (NM_001024644) -316 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 355-231 chr2 21607246 21607541 + 2 NA Intergenic Intergenic 103259 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 427-260 chr8 92258532 92258844 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -155303 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 676-73 chr21 34660614 34661084 + 2 NA Intergenic L1MA4A|LINE|L1 -8145 NM_001317009 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 232-338 chr6 141549395 141549606 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 539299 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 552-129 chr3 3746189 3746628 + 2 NA intron (NR_149025, intron 5 of 5) intron (NR_149025, intron 5 of 5) -53023 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 254-13 chr1 109561643 109561830 + 2 NA intron (NM_006496, intron 1 of 8) L2b|LINE|L2 13121 NM_006496 2773 Hs.73799 NM_006496 ENSG00000065135 GNAI3 87U6|ARCND1 G protein subunit alpha i3 protein-coding 200-234 chr6 53535783 53535974 + 2 NA intron (NM_001498, intron 1 of 15) L1ME1|LINE|L1 9223 NM_001498 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 274-168 chr18 2424704 2424890 + 2 NA Intergenic Intergenic 146708 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 369-73 chr12 14301818 14302039 + 2 NA Intergenic L1PREC2|LINE|L1 -63704 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 500-207 chr4 71888105 71888525 + 2 NA Intergenic L1MA7|LINE|L1 -82795 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 551-86 chr2 50236349 50236791 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 111184 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 314-511 chr6 146158146 146158372 + 2 NA intron (NM_001278065, intron 2 of 9) L2a|LINE|L2 129061 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 337-583 chr9 79339269 79339499 + 2 NA Intergenic L1M6|LINE|L1 -193718 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 432-2 chr1 40694357 40694614 + 2 NA intron (NM_001142590, intron 1 of 14) intron (NM_001142590, intron 1 of 14) -2224 NR_024567 100130557 Hs.233458 NR_024567 NFYC-AS1 0808y08y NFYC antisense RNA 1 ncRNA 331-277 chr2 110727258 110727471 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -5209 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 223-321 chr7 84557347 84557511 + 2 NA intron (NR_110079, intron 2 of 2) L1MB1|LINE|L1 24953 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 243-53 chr10 82988071 82988273 + 2 NA TTS (NM_001165973) TTS (NM_001165973) 688917 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 336-446 chr5 25700675 25700911 + 2 NA Intergenic L1MB8|LINE|L1 509840 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 205-166 chr20 63576513 63576636 + 2 NA Intergenic Intergenic -2335 NM_001037335 85441 Hs.517180 NM_033405 ENSG00000130589 HELZ2 PDIP-1|PRIC285 helicase with zinc finger 2 protein-coding 393-233 chr3 191915563 191915918 + 2 NA Intergenic Intergenic -322890 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 421-229 chr5 7553058 7553344 + 2 NA intron (NM_020546, intron 3 of 24) L1ME2|LINE|L1 157063 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 270-205 chr20 11520613 11520823 + 2 NA Intergenic Intergenic -247335 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 173-18 chr11 59930697 59930837 + 2 NA Intergenic Intergenic -12112 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 264-342 chr5 149081415 149081629 + 2 NA intron (NR_122044, intron 2 of 2) L1MA9|LINE|L1 18205 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 359-74 chr10 123058797 123059130 + 2 NA TTS (NM_001330174) TTS (NM_001330174) 49957 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 277-129 chr15 99612362 99612517 + 2 NA intron (NM_001352615, intron 3 of 12) L1MB7|LINE|L1 -20539 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 457-65 chr14 48773957 48774261 + 2 NA Intergenic L1MC4a|LINE|L1 812271 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 116-46 chr7 92564348 92564436 + 2 NA intron (NM_152789, intron 10 of 10) L2a|LINE|L2 25657 NM_001288584 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 332-135 chr13 25623787 25624055 + 2 NA intron (NM_016529, intron 24 of 36) (TA)n|Simple_repeat|Simple_repeat 155147 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 311-403 chr5 39490807 39491049 + 2 NA Intergenic L1ME3G|LINE|L1 -29503 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 208-180 chr4 34475961 34476132 + 2 NA Intergenic Intergenic -206299 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 183-13 chr10 41861263 41861401 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 506713 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 239-252 chr3 111366603 111366785 + 2 NA Intergenic Intergenic -175503 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 267-30 chr1 197305132 197305280 + 2 NA intron (NM_001257965, intron 3 of 14) intron (NM_001257965, intron 3 of 14) 36954 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 693-37 chr15 52899376 52899912 + 2 NA Intergenic L1MA3|LINE|L1 -109308 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 630-101 chr4 156989060 156989535 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -17498 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 347-484 chr7 127192115 127192431 + 2 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -22854 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 475-134 chr2 82262283 82262674 + 2 NA Intergenic MIR1_Amn|SINE|MIR -594325 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 407-340 chr9 13374591 13374849 + 2 NA Intergenic Intergenic 56609 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 209-306 chr7 110804401 110804586 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -286513 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 568-203 chr8 136686051 136686484 + 2 NA intron (NR_147196, intron 2 of 5) L1PREC2|LINE|L1 155469 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 310-406 chr5 79495197 79495483 + 2 NA intron (NM_001277078, intron 1 of 5) L2c|LINE|L2 18496 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 354-101 chr12 22073523 22073745 + 2 NA Intergenic HERV35I-int|LTR|ERV1 27416 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 295-272 chr21 34969778 34969954 + 2 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) 69560 NR_026812 80215 Hs.672131 NM_025143 RUNX1-IT1 C21orf96 RUNX1 intronic transcript 1 ncRNA 233-103 chr14 83546827 83547043 + 2 NA Intergenic Intergenic 904303 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 403-316 chr8 134726350 134726726 + 2 NA Intergenic MER50|LTR|ERV1 -13507 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 252-132 chr15 96476956 96477119 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 143272 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 156-108 chr8 129444788 129444931 + 2 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 39283 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 288-296 chr4 51834780 51835049 + 2 NA Intergenic Intergenic -8086 NM_001287757 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 120-4 chr1 173991828 173991912 + 2 NA intron (NM_001300852, intron 1 of 18) intron (NM_001300852, intron 1 of 18) 1202 NM_001300850 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 398-297 chr6 76997005 76997253 + 2 NA Intergenic Intergenic -403506 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 303-243 chr20 2930816 2931040 + 2 NA intron (NM_080841, intron 1 of 22) intron (NM_080841, intron 1 of 22) 7721 NM_080841 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 382-403 chr8 71004686 71004994 + 2 NA Intergenic AluJo|SINE|Alu 335501 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 249-401 chr8 13692725 13692962 + 2 NA Intergenic L1M2|LINE|L1 63153 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 453-9 chr1 102021587 102021904 + 2 NA Intergenic L1MEf|LINE|L1 -24511 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 264-426 chr8 117372247 117372395 + 2 NA Intergenic Intergenic -148392 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 364-468 chr9 28530820 28531036 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 188377 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 372-125 chr12 125704249 125704597 + 2 NA Intergenic (AACAA)n|Simple_repeat|Simple_repeat 81971 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 447-187 chr3 193481085 193481422 + 2 NA intron (NM_032279, intron 8 of 29) intron (NM_032279, intron 8 of 29) -71960 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 360-464 chr8 88948969 88949215 + 2 NA Intergenic Intergenic -621609 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 723-4 chr1 93537231 93537642 + 2 NA intron (NM_001164473, intron 10 of 16) (TTCC)n|Simple_repeat|Simple_repeat 47726 NM_001308251 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 384-243 chr3 175819076 175819339 + 2 NA Intergenic LTR10A|LTR|ERV1 -42874 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 470-247 chr7 29948192 29948588 + 2 NA intron (NM_001145514, intron 3 of 7) MIRb|SINE|MIR 41411 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 306-122 chr13 35757296 35757482 + 2 NA Intergenic LTR8|LTR|ERV1 59662 NR_132115 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 495-65 chr14 82171234 82171601 + 2 NA Intergenic L1MEd|LINE|L1 -428279 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 185-104 chr2 148378363 148378514 + 2 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -266313 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 238-391 chr8 113742292 113742481 + 2 NA Intergenic Intergenic -305447 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 160-82 chr4 181623593 181623715 + 2 NA Intergenic Intergenic 206319 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 283-170 chr16 79504058 79504282 + 2 NA Intergenic Intergenic 96567 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 433-40 chr11 29233234 29233624 + 2 NA Intergenic Intergenic -360984 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 403-183 chr21 30970365 30970664 + 2 NA Intergenic FLAM_A|SINE|Alu 67962 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 503-141 chr2 6142090 6142526 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 160330 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 277-105 chr14 25512348 25512531 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -462142 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 202-283 chrX 131131599 131131760 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 49244 NM_001330651 158763 Hs.22905 NM_144967 ENSG00000147256 ARHGAP36 - Rho GTPase activating protein 36 protein-coding 500-287 chr8 58731962 58732327 + 2 NA Intergenic Intergenic -72291 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 196-195 chr4 175835760 175835917 + 2 NA intron (NR_048571, intron 1 of 5) (TA)n|Simple_repeat|Simple_repeat -22724 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 223-297 chr5 179088359 179088545 + 2 NA Intergenic L1MCb|LINE|L1 28079 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 343-138 chr14 52024174 52024490 + 2 NA intron (NM_007361, intron 12 of 21) MLT1F2|LTR|ERVL-MaLR 34786 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 279-110 chr15 27027648 27027848 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 56567 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 603-3 chr1 79585364 79585897 + 2 NA Intergenic Intergenic -578900 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 500-208 chr4 79810333 79810640 + 2 NA Intergenic L1MC4a|LINE|L1 -16985 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 359-507 chr9 29609999 29610207 + 2 NA Intergenic L1MA8|LINE|L1 -396502 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 645-42 chr17 60949801 60950240 + 2 NA intron (NM_001330413, intron 14 of 25) L1MC5a|LINE|L1 272169 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 533-233 chr8 112907575 112907914 + 2 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 264251 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 312-432 chr5 120501223 120501459 + 2 NA intron (NM_016644, intron 2 of 2) intron (NM_016644, intron 2 of 2) -30123 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 304-207 chr18 6327962 6328128 + 2 NA intron (NM_001365765, intron 1 of 18) L2b|LINE|L2 30985 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 494-229 chr5 55395615 55395937 + 2 NA intron (NM_015360, intron 19 of 26) L1MC4|LINE|L1 87787 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 907-21 chr4 91453020 91453721 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 823932 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 436-75 chr13 60885905 60886219 + 2 NA Intergenic Intergenic 213107 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 201-64 chr12 54873001 54873126 + 2 NA Intergenic Intergenic 18547 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 303-491 chr9 36698143 36698374 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 125341 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 293-320 chr4 167692844 167693054 + 2 NA Intergenic Intergenic -399588 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 596-163 chr8 68849698 68850203 + 2 NA Intergenic Intergenic 254240 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 379-2 chr1 20018867 20019130 + 2 NA Intergenic L1MA5|LINE|L1 -38564 NM_001161727 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 469-34 chr10 65122467 65122761 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -198096 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 584-136 chr5 83570896 83571300 + 2 NA intron (NM_001164098, intron 11 of 13) intron (NM_001164098, intron 11 of 13) -8784 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 505-121 chr18 73727769 73728207 + 2 NA Intergenic Intergenic 403047 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 362-291 chr4 27290234 27290554 + 2 NA Intergenic Intergenic 72915 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 340-361 chr3 67826403 67826701 + 2 NA intron (NR_109992, intron 3 of 6) L1ME3G|LINE|L1 -165040 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 344-505 chr8 129554870 129555052 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 20057 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 324-92 chr11 61965273 61965540 + 2 NA TTS (NM_004183) TTS (NM_004183) 2228 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 348-204 chr18 60642769 60643049 + 2 NA Intergenic L2|LINE|L2 -270134 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 889-9 chr12 17244459 17245286 + 2 NA Intergenic Intergenic 256125 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 286-138 chr15 79694117 79694270 + 2 NA Intergenic L1MEd|LINE|L1 202804 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 266-40 chr10 61555916 61556116 + 2 NA Intergenic Intergenic 75975 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 248-235 chr22 39797594 39797807 + 2 NA intron (NM_152512, intron 5 of 6) L1M2|LINE|L1 96060 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 237-24 chr1 227332441 227332575 + 2 NA Intergenic AluJb|SINE|Alu -14016 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 216-252 chr4 80371718 80371906 + 2 NA intron (NM_152770, intron 2 of 5) MSTA-int|LTR|ERVL-MaLR 36092 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 324-353 chr3 89414850 89415087 + 2 NA intron (NM_005233, intron 10 of 16) intron (NM_005233, intron 10 of 16) 307347 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 316-379 chr4 10896099 10896350 + 2 NA Intergenic LTR79|LTR|ERVL -211456 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 275-140 chr16 86734076 86734312 + 2 NA intron (NR_135182, intron 2 of 3) MLT1C|LTR|ERVL-MaLR 12103 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 419-147 chr2 114310711 114310975 + 2 NA Intergenic L1M1|LINE|L1 -131798 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 189-96 chr2 142077489 142077600 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 54157 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 219-40 chr11 6016044 6016208 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 11615 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 265-241 chr3 69917093 69917265 + 2 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) -19413 NM_001184968 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 383-30 chr10 18830501 18830781 + 2 NA Intergenic L1MA5A|LINE|L1 171210 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 180-6 chr1 111828317 111828461 + 2 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 28516 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 317-474 chr8 30674937 30675131 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -16798 NM_002095 2961 Hs.77100 NM_002095 ENSG00000197265 GTF2E2 FE|TF2E2|TFIIE-B|TTD6 general transcription factor IIE subunit 2 protein-coding 134-6 chr1 178758769 178758883 + 2 NA intron (NM_152663, intron 1 of 19) L1M1|LINE|L1 33582 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 250-412 chr7 153853363 153853533 + 2 NA intron (NM_001364500, intron 2 of 26) HAL1ME|LINE|L1 -33594 NM_001364501 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 282-300 chr3 82886073 82886339 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 900064 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 545-119 chr2 145225085 145225493 + 2 NA Intergenic Intergenic 557322 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 309-92 chr11 113596305 113596473 + 2 NA Intergenic L1M5|LINE|L1 109919 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 350-546 chr8 135349737 135349921 + 2 NA Intergenic Intergenic -107627 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 275-147 chr17 66879406 66879568 + 2 NA intron (NM_145811, intron 3 of 5) MER21C|LTR|ERVL 44370 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 527-188 chr4 58641111 58641476 + 2 NA Intergenic L2a|LINE|L2 -104965 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 303-10 chr1 103815026 103815280 + 2 NA Intergenic Intergenic 65312 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 413-24 chr1 216324628 216324960 + 2 NA intron (NM_206933, intron 6 of 71) intron (NM_206933, intron 6 of 71) 98602 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 311-142 chr14 69600699 69600978 + 2 NA Intergenic L2b|LINE|L2 -10758 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 814-44 chr4 44486044 44486796 + 2 NA Intergenic HERVL18-int|LTR|ERVL -37611 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 345-10 chr1 89921157 89921411 + 2 NA intron (NM_001134479, intron 2 of 2) AluJb|SINE|Alu 73682 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 330-319 chr20 17463285 17463543 + 2 NA intron (NM_002594, intron 10 of 11) (TTTTACACCA)n|Simple_repeat|Simple_repeat 67965 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 344-482 chr8 46397561 46397777 + 2 NA Intergenic ALR/Alpha|Satellite|centr 219974 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 436-42 chr10 121728753 121729124 + 2 NA Intergenic Intergenic -130480 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 130-77 chr6 144131407 144131477 + 2 NA Intergenic Intergenic -19075 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 214-273 chr6 9265993 9266157 + 2 NA Intergenic Intergenic 613866 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 377-365 chr7 33702129 33702350 + 2 NA Intergenic Intergenic -202676 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 311-473 chr7 54285642 54285837 + 2 NA Intergenic L1M3c|LINE|L1 -44958 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 382-378 chr7 38948563 38948867 + 2 NA Intergenic L1M5|LINE|L1 -29194 NM_001370959 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 258-150 chr16 7824072 7824307 + 2 NA Intergenic MIRb|SINE|MIR 491344 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 425-229 chr5 40153208 40153608 + 2 NA Intergenic L1MA6|LINE|L1 101117 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 614-50 chr2 16706071 16706402 + 2 NA Intergenic Intergenic -40402 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 289-342 chr4 80376375 80376556 + 2 NA intron (NM_152770, intron 2 of 5) L1ME1|LINE|L1 40745 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 350-58 chr10 106486746 106486922 + 2 NA Intergenic Intergenic 346669 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 243-286 chr3 87053737 87053877 + 2 NA Intergenic Intergenic -35473 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 564-38 chr11 115815845 115816329 + 2 NA Intergenic Intergenic -55887 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 333-209 chr18 76042701 76042999 + 2 NA Intergenic Intergenic -80148 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 442-281 chr7 146554812 146555218 + 2 NA Intergenic MIRc|SINE|MIR -219256 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 484-9 chr1 90874197 90874506 + 2 NA Intergenic L1ME1|LINE|L1 22592 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 402-278 chr5 98480916 98481151 + 2 NA Intergenic (ATTTTTC)n|Simple_repeat|Simple_repeat -287599 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 240-151 chr15 56943504 56943633 + 2 NA intron (NM_207038, intron 3 of 19) MIRb|SINE|MIR 24123 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 372-282 chr20 23080011 23080368 + 2 NA 3' UTR (NM_012072, exon 2 of 2) 3' UTR (NM_012072, exon 2 of 2) 6135 NM_012072 22918 Hs.97199 NM_012072 ENSG00000125810 CD93 C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1 CD93 molecule protein-coding 336-338 chr21 28806685 28807009 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 78520 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 400-102 chr14 86554937 86555145 + 2 NA Intergenic L1MA6|LINE|L1 -350737 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 325-479 chr6 141124777 141125033 + 2 NA Intergenic L1M4|LINE|L1 441091 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 316-261 chr2 60016685 60016917 + 2 NA Intergenic L1ME3B|LINE|L1 366235 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 500-237 chr5 123360085 123360450 + 2 NA intron (NM_153223, intron 19 of 20) intron (NM_153223, intron 19 of 20) 63325 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 615-26 chr12 42984389 42984835 + 2 NA Intergenic L1PA13|LINE|L1 -170703 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 268-72 chr11 103565139 103565336 + 2 NA Intergenic Intergenic -284669 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 399-240 chr5 22636308 22636598 + 2 NA intron (NM_004061, intron 1 of 14) L1MB8|LINE|L1 216891 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 317-484 chr8 88520082 88520303 + 2 NA Intergenic Intergenic -192709 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 289-389 chr5 125074577 125074772 + 2 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 37843 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 430-21 chr1 246145036 246145434 + 2 NA intron (NM_022743, intron 5 of 11) MIRb|SINE|MIR 272177 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 221-7 chr1 78966183 78966338 + 2 NA intron (NM_022159, intron 2 of 14) MER61A|LTR|ERV1 40470 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 801-41 chr5 38051177 38051723 + 2 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 25753 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 275-189 chr2 51331669 51331896 + 2 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 299181 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 172-95 chr4 106846349 106846458 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 189910 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 607-121 chr5 112683325 112683745 + 2 NA promoter-TSS (NR_104673) promoter-TSS (NR_104673) -647 NR_104673 102467216 Hs.174158 NR_104673 LOC102467216 - uncharacterized LOC102467216 ncRNA 438-160 chr22 49707398 49707708 + 2 NA Intergenic Intergenic -50034 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 1157-4 chr14 63138553 63139487 + 2 NA Intergenic L1PA5|LINE|L1 -65423 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 295-396 chr6 13834487 13834688 + 2 NA Intergenic Intergenic -20027 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 543-118 chr2 35730264 35730632 + 2 NA Intergenic L3|LINE|CR1 259043 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 355-36 chr10 17974423 17974696 + 2 NA intron (NM_001282734, intron 3 of 11) L1MA2|LINE|L1 22641 NM_001145195 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 368-81 chr11 79328794 79329129 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 73148 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 230-318 chr6 27130332 27130542 + 2 NA Intergenic Intergenic 2359 NM_021058 8970 Hs.591807 NM_021058 ENSG00000124635 HIST1H2BJ H2B/r|H2BFR|H2BJ histone cluster 1 H2B family member j protein-coding 244-90 chr14 55891039 55891243 + 2 NA Intergenic L1ME4b|LINE|L1 -94467 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 469-185 chr3 108723550 108723839 + 2 NA Intergenic Intergenic 33589 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 193-190 chr7 83002212 83002383 + 2 NA intron (NM_033026, intron 3 of 24) L1MEd|LINE|L1 160587 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 317-418 chr6 82640316 82640592 + 2 NA Intergenic L1PB1|LINE|L1 276210 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 336-258 chr2 21071907 21072165 + 2 NA Intergenic Intergenic -27963 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 447-184 chr3 159343700 159344054 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 61231 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 401-83 chr14 42365447 42365753 + 2 NA Intergenic Intergenic 758744 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 309-186 chr16 7167854 7168045 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -164896 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 215-77 chr14 33895771 33895975 + 2 NA Intergenic L1MA9|LINE|L1 55201 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 305-558 chr9 18605233 18605492 + 2 NA intron (NM_052866, intron 4 of 12) intron (NM_052866, intron 4 of 12) 32056 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 331-435 chr5 133319734 133320019 + 2 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 107830 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 517-182 chr3 152665724 152666059 + 2 NA Intergenic Intergenic -169240 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 243-209 chr2 71908416 71908617 + 2 NA Intergenic L1MC4a|LINE|L1 239346 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 214-82 chr12 38533910 38534120 + 2 NA Intergenic MER31B|LTR|ERV1 217241 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 227-363 chr8 29601825 29602004 + 2 NA Intergenic Intergenic 146195 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 302-462 chr8 118309563 118309761 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -197843 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 367-211 chr2 108531579 108531874 + 2 NA intron (NR_135290, intron 1 of 2) L1MC5|LINE|L1 2493 NR_135290 644903 NM_032658 ENSG00000214184 GCC2-AS1 - GCC2 antisense RNA 1 ncRNA 199-80 chr17 33451704 33451874 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 81971 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 243-206 chr2 55939411 55939566 + 2 NA Intergenic Intergenic -15706 NM_001039348 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 146-92 chr8 139457345 139457481 + 2 NA Intergenic Intergenic 245710 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 339-144 chr13 102937589 102937854 + 2 NA Intergenic Intergenic 57622 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 308-277 chr21 34350373 34350621 + 2 NA Intergenic L1MD2|LINE|L1 -13527 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 493-31 chr10 52984742 52985089 + 2 NA Intergenic L2a|LINE|L2 -213215 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 374-399 chr8 127350447 127350754 + 2 NA intron (NR_117099, intron 3 of 3) Arthur1B|DNA|hAT-Tip100 -49799 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 364-193 chr2 8260184 8260537 + 2 NA intron (NR_152741, intron 8 of 9) intron (NR_152741, intron 8 of 9) 68059 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 309-90 chr11 109549606 109549897 + 2 NA Intergenic Intergenic 127561 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 496-33 chr10 53254909 53255375 + 2 NA Intergenic Intergenic -483442 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 315-204 chr19 9444909 9445071 + 2 NA Intergenic AluJb|SINE|Alu -9412 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 476-177 chr3 60534312 60534648 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 83390 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 383-388 chr8 110430208 110430448 + 2 NA Intergenic L1PREC2|LINE|L1 -454557 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 383-51 chr11 41949419 41949776 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 135861 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 299-127 chr14 43097978 43098136 + 2 NA Intergenic Intergenic 1409226 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 364-141 chr15 24754469 24754730 + 2 NA Intergenic Intergenic -69009 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 491-163 chr3 25483767 25484124 + 2 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 25635 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 254-72 chr12 17128717 17128945 + 2 NA Intergenic Intergenic 140084 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 209-287 chr7 1462263 1462438 + 2 NA Intergenic L2b|LINE|L2 -2880 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 498-219 chr5 63934675 63935031 + 2 NA Intergenic Intergenic 27439 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 348-230 chr2 103601496 103601791 + 2 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -617214 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 546-104 chr2 71807311 71807747 + 2 NA Intergenic Intergenic 340333 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 672-74 chr3 116200409 116200855 + 2 NA intron (NM_001318915, intron 1 of 8) X6B_LINE|LINE|CR1 -159392 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 684-81 chr4 33091574 33092003 + 2 NA Intergenic Intergenic 740750 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 326-304 chr20 59131725 59132014 + 2 NA Intergenic Intergenic -59151 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 256-374 chr6 164393905 164394055 + 2 NA Intergenic L1ME1|LINE|L1 428083 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 321-456 chr5 34555873 34556124 + 2 NA Intergenic MIRb|SINE|MIR -100330 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 222-396 chrX 129081395 129081537 + 2 NA Intergenic Intergenic 442024 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 262-60 chr10 85963772 85963947 + 2 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 300929 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 302-251 chr20 57706968 57707253 + 2 NA intron (NM_199171, intron 1 of 3) intron (NM_199171, intron 1 of 3) 2905 NM_020182 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 325-315 chr20 62102015 62102261 + 2 NA Intergenic Intergenic -20337 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 477-100 chr15 43283166 43283429 + 2 NA intron (NM_052955, intron 7 of 12) L1MC4|LINE|L1 -16369 NM_201631 9333 Hs.129719 NM_004245 ENSG00000104055 TGM5 PSS2|TGASE5|TGASEX|TGM6|TGMX|TGX transglutaminase 5 protein-coding 1049-4 chr11 90509873 90510640 + 2 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 45601 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 370-2 chr1 45116602 45116844 + 2 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 89882 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 187-99 chr21 28507546 28507695 + 2 NA Intergenic Intergenic -31698 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 345-447 chr5 162982537 162982866 + 2 NA Intergenic Intergenic -454870 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 645-55 chr2 81474214 81474653 + 2 NA Intergenic L1MEd|LINE|L1 -7487 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 151-77 chr7 35713682 35713797 + 2 NA Intergenic Intergenic -2698 NR_108082 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 354-148 chr14_GL000225v1_random 13029 13208 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 395-360 chr9 107728810 107729146 + 2 NA Intergenic AluSz|SINE|Alu -239209 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 344-451 chr7 11253638 11253971 + 2 NA Intergenic Intergenic 279932 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 404-19 chr1 158960584 158960852 + 2 NA intron (NM_198929, intron 7 of 7) intron (NM_198929, intron 7 of 7) 29166 NM_198929 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 267-397 chr7 63372424 63372646 + 2 NA Intergenic Intergenic -22469 NR_136256 102724738 Hs.512544 NR_136256 LOC102724738 - solute carrier family 25 member 1 pseudogene pseudo 321-150 chr12 128311941 128312260 + 2 NA intron (NM_001136103, intron 1 of 8) MLT1L|LTR|ERVL-MaLR 18008 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 338-405 chr5 4852241 4852515 + 2 NA Intergenic L1M3|LINE|L1 78897 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 355-113 chr11 114828051 114828239 + 2 NA Intergenic Intergenic 149618 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 353-156 chr15 51149921 51150224 + 2 NA intron (NR_146310, intron 1 of 2) intron (NR_146310, intron 1 of 2) -44796 NM_207381 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 447-43 chr11 98591598 98592020 + 2 NA Intergenic AluY|SINE|Alu -429140 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 530-96 chr17 52067932 52068280 + 2 NA intron (NM_001082533, intron 3 of 9) THE1B|LTR|ERVL-MaLR 90608 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 219-131 chr17 56129512 56129719 + 2 NA Intergenic Intergenic -23860 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 282-91 chr12 21688501 21688690 + 2 NA Intergenic L1PA15|LINE|L1 -30740 NM_002300 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 327-59 chr10 82839785 82840085 + 2 NA intron (NR_163252, intron 3 of 8) L1MC4a|LINE|L1 -607015 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 363-11 chr1 87972430 87972641 + 2 NA Intergenic Intergenic -600880 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 355-194 chr17 35366531 35366854 + 2 NA intron (NM_152270, intron 1 of 4) intron (NM_152270, intron 1 of 4) 6929 NM_001104590 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 500-161 chr2 217236270 217236618 + 2 NA Intergenic L1PREC2|LINE|L1 -46289 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 277-70 chr11 27601895 27602158 + 2 NA intron (NR_033314, intron 3 of 6) MER74B|LTR|ERVL 32601 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 333-436 chr5 26533829 26534059 + 2 NA Intergenic Intergenic 504642 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 387-226 chr3 94701386 94701604 + 2 NA Intergenic Intergenic -236768 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 352-410 chr5 38929705 38929913 + 2 NA intron (NM_003999, intron 15 of 17) MER4C|LTR|ERV1 83797 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 369-331 chr5 99901013 99901304 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 367168 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 316-558 chr8 107270624 107270913 + 2 NA intron (NM_001199859, intron 7 of 8) intron (NM_001199859, intron 7 of 8) 65747 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 245-213 chr2 226532682 226532886 + 2 NA Intergenic Intergenic 126009 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 208-31 chr10 112077312 112077424 + 2 NA Intergenic MIRb|SINE|MIR 106397 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 347-429 chr6 40251488 40251751 + 2 NA Intergenic L3|LINE|CR1 104387 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 538-244 chr8 127822620 127823011 + 2 NA intron (NR_003367, intron 1 of 8) L2b|LINE|L2 26853 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 297-404 chr6 75086100 75086291 + 2 NA 3' UTR (NM_004370, exon 66 of 66) 3' UTR (NM_004370, exon 66 of 66) 42587 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 174-30 chr12 40833817 40833947 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 5944 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 390-82 chr13 50136089 50136410 + 2 NA intron (NR_109974, intron 2 of 6) Tigger20a|DNA|TcMar-Tigger -10708 NR_152566 8847 Hs.547964 NR_002612 ENSG00000231607 DLEU2 ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 ncRNA 216-308 chr6 87608547 87608716 + 2 NA intron (NM_181837, intron 6 of 19) intron (NM_181837, intron 6 of 19) 18564 NM_012381 23595 Hs.410228 NM_012381 ENSG00000135336 ORC3 LAT|LATHEO|ORC3L origin recognition complex subunit 3 protein-coding 343-226 chr2 28461750 28461941 + 2 NA Intergenic L2a|LINE|L2 -34215 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 576-48 chr14 64108632 64109117 + 2 NA intron (NM_015180, intron 65 of 114) intron (NM_015180, intron 65 of 114) -13749 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 270-86 chr12 52583741 52583966 + 2 NA Intergenic MIRb|SINE|MIR -10010 NM_175053 121391 Hs.660125 NM_175053 ENSG00000170484 KRT74 ADWH|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4 keratin 74 protein-coding 458-85 chr15 35391923 35392368 + 2 NA intron (NM_080650, intron 6 of 8) intron (NM_080650, intron 6 of 8) -19781 NR_037507 100500904 NR_037507 ENSG00000265102 MIR3942 - microRNA 3942 ncRNA 256-161 chr17 51103007 51103223 + 2 NA intron (NM_001130527, intron 1 of 29) intron (NM_001130527, intron 1 of 29) 17753 NM_001130527 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 319-297 chr20 59546179 59546394 + 2 NA Intergenic Intergenic -31223 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 253-232 chr21 23610827 23610988 + 2 NA Intergenic LTR82A|LTR|ERVL -226072 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 256-441 chr8 138508608 138508819 + 2 NA Intergenic L1ME3D|LINE|L1 -10983 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 403-259 chr5 124804214 124804429 + 2 NA Intergenic LTR37A|LTR|ERV1 -59209 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 399-150 chr2 80744475 80744734 + 2 NA Intergenic Intergenic 431225 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 230-273 chr4 124150308 124150496 + 2 NA Intergenic L1MA8|LINE|L1 376138 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 431-115 chr2 6471140 6471368 + 2 NA Intergenic Intergenic -95832 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 172-3 chr1 103854962 103855070 + 2 NA Intergenic L1MA2|LINE|L1 105175 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 436-210 chr4 69846473 69846847 + 2 NA intron (NM_005420, intron 6 of 7) L1ME3E|LINE|L1 13485 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 245-295 chr6 34524947 34525135 + 2 NA intron (NM_001199583, intron 1 of 9) intron (NM_001199583, intron 1 of 9) 10169 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 370-346 chr4 63684848 63685215 + 2 NA Intergenic L1M5|LINE|L1 724419 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 537-181 chr4 124484897 124485279 + 2 NA Intergenic Intergenic 73346 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 467-77 chr14 44692141 44692511 + 2 NA Intergenic Intergenic 106800 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 366-183 chr2 3985063 3985318 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 11029 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 364-355 chr5 111017083 111017337 + 2 NA Intergenic Intergenic -52870 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 539-93 chr17 69079349 69079813 + 2 NA intron (NM_080284, intron 37 of 38) intron (NM_080284, intron 37 of 38) -18654 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 164-12 chr10 10492473 10492570 + 2 NA intron (NM_001326317, intron 1 of 14) L1MB3|LINE|L1 29971 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 256-343 chr5 153734673 153734881 + 2 NA intron (NM_000827, intron 11 of 15) L2c|LINE|L2 164210 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 310-346 chr3 138239601 138239829 + 2 NA intron (NM_001267042, intron 10 of 20) intron (NM_001267042, intron 10 of 20) 52184 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 366-421 chr7 111274201 111274452 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 183199 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 323-79 chr11 38146563 38146823 + 2 NA Intergenic L1PA16|LINE|L1 208092 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 332-410 chr5 46014692 46014911 + 2 NA Intergenic ALR/Alpha|Satellite|centr -318421 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 368-377 chr5 144856441 144856655 + 2 NA Intergenic L1MD2|LINE|L1 651157 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 165-10 chr10 81290529 81290659 + 2 NA Intergenic L1PA15|LINE|L1 -584600 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 325-8 chr1 63056510 63056735 + 2 NA Intergenic Intergenic -44151 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 394-242 chr4 81762961 81763208 + 2 NA Intergenic L2b|LINE|L2 -291177 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 752-78 chr8 132305948 132306567 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 141005 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 397-40 chr10 95822556 95822933 + 2 NA intron (NM_001312654, intron 2 of 9) intron (NM_001312654, intron 2 of 9) 66581 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 382-450 chrX 85554088 85554436 + 2 NA Intergenic L1MB3|LINE|L1 -174597 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 473-247 chr6 148914251 148914641 + 2 NA intron (NM_005715, intron 2 of 7) MER1B|DNA|hAT-Charlie 50238 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 303-153 chr16 7540849 7541064 + 2 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 208111 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 335-460 chr6 49836894 49837151 + 2 NA intron (NM_170609, intron 6 of 6) intron (NM_170609, intron 6 of 6) -12256 NR_110843 101927048 Hs.742154 NR_110843 LOC101927048 - uncharacterized LOC101927048 ncRNA 481-293 chr8 86336987 86337350 + 2 NA Intergenic AluSx|SINE|Alu -5379 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 562-12 chr1 188233290 188233756 + 2 NA Intergenic Intergenic 789895 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 373-265 chr3 137870066 137870396 + 2 NA Intergenic L1M1|LINE|L1 98320 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 287-216 chr2 206114871 206115045 + 2 NA TTS (NR_033248) TTS (NR_033248) 1614 NR_033248 100329109 Hs.356055 NR_033248 GCSHP3 - glycine cleavage system protein H pseudogene 3 pseudo 287-238 chr22 33887778 33887995 + 2 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 32542 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 316-321 chr20 47045324 47045618 + 2 NA intron (NM_172110, intron 5 of 13) MLT1H|LTR|ERVL-MaLR -121496 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 413-179 chr22 34044024 34044384 + 2 NA Intergenic MIR|SINE|MIR -121316 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 506 chr1 14217285 14217682 + 2 NA Intergenic Intergenic 202490 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 741-57 chr5 116174326 116174966 + 2 NA intron (NM_001308080, intron 5 of 6) L2a|LINE|L2 -81097 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 314-120 chr12 24871057 24871242 + 2 NA intron (NM_001178091, intron 4 of 9) intron (NM_001178091, intron 4 of 9) 31073 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 402-281 chr5 107345333 107345563 + 2 NA Intergenic L1M4a2|LINE|L1 325489 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 419-255 chr6 124733330 124733720 + 2 NA intron (NM_001040214, intron 4 of 6) L1MC3|LINE|L1 -229020 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 529-159 chr4 53510345 53510708 + 2 NA intron (NM_001126328, intron 2 of 10) intron (NM_001126328, intron 2 of 10) 10449 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 358-46 chr10 58587729 58587940 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 74962 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 378-346 chr5 110267200 110267563 + 2 NA Intergenic Intergenic 246534 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 169-39 chr14 70637647 70637777 + 2 NA intron (NR_110071, intron 1 of 2) intron (NR_110071, intron 1 of 2) 3586 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 248-225 chr20 57872830 57873058 + 2 NA Intergenic MIRb|SINE|MIR -130960 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 709-51 chr21 37314956 37315407 + 2 NA Intergenic L1PA6|LINE|L1 -47073 NM_001331022 10311 Hs.369488 NM_006052 ENSG00000157538 VPS26C DCRA|DSCR3|DSCRA VPS26 endosomal protein sorting factor C protein-coding 355-245 chr2 103529260 103529527 + 2 NA Intergenic Intergenic -544964 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 198-169 chr3 107208875 107209032 + 2 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 31685 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 233-297 chr5 50200474 50200658 + 2 NA Intergenic ALR/Alpha|Satellite|centr 240722 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 579-184 chrX 57554430 57554946 + 2 NA Intergenic AluSz6|SINE|Alu -37148 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 338-456 chr5 166165300 166165520 + 2 NA Intergenic Intergenic 760960 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 326-238 chr2 41638444 41638622 + 2 NA Intergenic L1PA10|LINE|L1 -239022 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 378-373 chr6 60709433 60709790 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -864519 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 433-279 chr8 84442377 84442735 + 2 NA intron (NM_001354308, intron 2 of 9) L2c|LINE|L2 27072 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 319-460 chr6 67461388 67461577 + 2 NA Intergenic Intergenic -593869 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 228-94 chr14 46778851 46779008 + 2 NA Intergenic Intergenic -127148 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 307-375 chr5 19351837 19352097 + 2 NA Intergenic Intergenic 534305 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 259-8 chr1 49089357 49089609 + 2 NA intron (NM_001323575, intron 4 of 12) L1PA15|LINE|L1 -167928 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 257-145 chr17 33791190 33791426 + 2 NA intron (NM_001094, intron 1 of 9) MIR3|SINE|MIR -257548 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 195-15 chr1 225151128 225151288 + 2 NA intron (NM_001367479, intron 31 of 85) intron (NM_001367479, intron 31 of 85) 221533 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 132-53 chr4 33329955 33330052 + 2 NA Intergenic Intergenic 709890 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 401-51 chr11 40816809 40817142 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -523845 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 263-445 chr9 29281375 29281542 + 2 NA Intergenic Intergenic -67857 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 359-391 chr5 59156696 59156996 + 2 NA 3' UTR (NM_001364600, exon 8 of 8) 3' UTR (NM_001364600, exon 8 of 8) -117370 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 316-86 chr10 126237917 126238113 + 2 NA intron (NM_001288974, intron 3 of 18) intron (NM_001288974, intron 3 of 18) 150462 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 609-109 chr5 121696100 121696623 + 2 NA Intergenic Intergenic -155521 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 188-142 chr3 187422869 187422999 + 2 NA Intergenic L1PA17|LINE|L1 -24112 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 316-605 chrX 74879028 74879325 + 2 NA intron (NM_001008537, intron 1 of 3) Tigger3c|DNA|TcMar-Tigger 46276 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 715-22 chr16 26763272 26763777 + 2 NA Intergenic Intergenic -303403 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 328-460 chr5 94053070 94053382 + 2 NA non-coding (NR_028080, exon 3 of 9) non-coding (NR_028080, exon 3 of 9) 58437 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 366-190 chr2 21002535 21002790 + 2 NA exon (NM_000384, exon 29 of 29) exon (NM_000384, exon 29 of 29) 41411 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 254-399 chr8 29666710 29666864 + 2 NA Intergenic (ATATA)n|Simple_repeat|Simple_repeat 81322 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 261-349 chr7 34409971 34410180 + 2 NA intron (NR_033665, intron 3 of 3) L1ME4a|LINE|L1 -248143 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 281-440 chr8 118224433 118224646 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -112720 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 616-144 chr6 115041567 115041932 + 2 NA Intergenic L1ME1|LINE|L1 602086 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 355-46 chr10 43218838 43219160 + 2 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) 10740 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 341-25 chr1 100924476 100924810 + 2 NA intron (NM_133496, intron 8 of 10) L2b|LINE|L2 28553 NM_001144884 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 163-83 chr3 88646351 88646456 + 2 NA Intergenic Intergenic 307947 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 775-24 chr14 44724592 44725100 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 74280 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 349-342 chr3 141059607 141059906 + 2 NA intron (NM_080862, intron 1 of 2) intron (NM_080862, intron 1 of 2) 8409 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 270-350 chr7 14196622 14196873 + 2 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -205322 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 377-194 chr2 34198669 34198923 + 2 NA intron (NR_126403, intron 4 of 5) HSMAR2|DNA|TcMar-Mariner 131570 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 429-230 chr5 30445369 30445713 + 2 NA Intergenic Intergenic 564981 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 146-4 chr1 113814322 113814418 + 2 NA 3' UTR (NM_001193431, exon 21 of 21) 3' UTR (NM_001193431, exon 21 of 21) 1758 NR_125965 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 396-265 chr4 179773185 179773454 + 2 NA Intergenic LOR1b|LTR|ERV1 1385830 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 315-65 chr10 75649737 75650005 + 2 NA intron (NR_131178, intron 1 of 7) L1MB3|LINE|L1 2362 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 275-268 chr4 70225121 70225286 + 2 NA promoter-TSS (NM_152997) promoter-TSS (NM_152997) -921 NM_152997 260436 Hs.733448 NM_152997 ENSG00000181617 FDCSP C4orf7|FDC-SP follicular dendritic cell secreted protein protein-coding 317-27 chr1 176286145 176286404 + 2 NA Intergenic L1PA15|LINE|L1 -78988 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 303-507 chrX 83261724 83261900 + 2 NA Intergenic L1PA11|LINE|L1 -246478 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 306-85 chr11 92396137 92396373 + 2 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 44159 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 369-271 chr3 110329950 110330248 + 2 NA Intergenic L1PREC2|LINE|L1 727271 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 221-51 chr11 66955588 66955755 + 2 NA intron (NM_001040716, intron 1 of 22) intron (NM_001040716, intron 1 of 22) 2712 NM_000920 5091 Hs.89890 NM_000920 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 515-216 chr5 115745072 115745422 + 2 NA Intergenic L1M1|LINE|L1 71410 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 384-404 chr9 105755981 105756191 + 2 NA intron (NM_018112, intron 5 of 5) AluSz|SINE|Alu 61545 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 271-309 chr4 66378063 66378210 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 101312 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 326-113 chr11 132364725 132364981 + 2 NA Intergenic L1M5|LINE|L1 80551 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 360-69 chr11 96320317 96320569 + 2 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -20995 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 303-77 chr11 110009894 110010103 + 2 NA Intergenic Intergenic -83394 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 487-224 chr5 20995307 20995640 + 2 NA Intergenic L1PA16|LINE|L1 -379938 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 277-351 chr6 66745562 66745830 + 2 NA Intergenic L1MA5|LINE|L1 957817 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 272-215 chr2 140904309 140904552 + 2 NA intron (NM_018557, intron 22 of 90) intron (NM_018557, intron 22 of 90) -317745 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 308-149 chr14 70471643 70471874 + 2 NA intron (NR_037933, intron 1 of 1) intron (NR_037933, intron 1 of 1) 11998 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 296-390 chr5 159551640 159551885 + 2 NA Intergenic Intergenic -85486 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 327-419 chr5 140783363 140783679 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -2615 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 398-200 chr3 22351247 22351506 + 2 NA Intergenic Intergenic 394237 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 148-89 chr7 37944986 37945078 + 2 NA intron (NM_001242948, intron 1 of 2) intron (NM_001242948, intron 1 of 2) 23713 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 360-326 chr4 52767459 52767744 + 2 NA Intergenic L1MA2|LINE|L1 -15961 NM_024534 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 365-236 chr20 45731915 45732164 + 2 NA Intergenic L1M2c|LINE|L1 9692 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 501-216 chr5 122630673 122631080 + 2 NA intron (NR_109881, intron 11 of 11) intron (NR_109881, intron 11 of 11) -46276 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 713-73 chr6 146140174 146140762 + 2 NA intron (NM_001278065, intron 2 of 9) AluSz6|SINE|Alu 111270 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 194-74 chr16 82165808 82165949 + 2 NA intron (NM_005792, intron 1 of 4) intron (NM_005792, intron 1 of 4) 4346 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 293-134 chr15 87062066 87062354 + 2 NA Intergenic L1ME3C|LINE|L1 -73784 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 637-76 chr21 18897115 18897573 + 2 NA Intergenic Intergenic -137532 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 645-108 chr7 9107880 9108335 + 2 NA Intergenic L1M1|LINE|L1 -526163 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 487-66 chr12 65505887 65506199 + 2 NA intron (NR_120431, intron 2 of 3) intron (NR_120431, intron 2 of 3) 51268 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 228-372 chr9 81064632 81064783 + 2 NA Intergenic L1MA2|LINE|L1 624828 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 219-235 chr3 81454164 81454324 + 2 NA Intergenic L1PA15|LINE|L1 307401 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 274-120 chr14 45959901 45960108 + 2 NA Intergenic L1ME1|LINE|L1 -104155 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 402-67 chr12 65483059 65483414 + 2 NA intron (NR_120431, intron 3 of 3) MSTA|LTR|ERVL-MaLR 74075 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 226-300 chr6 48500688 48500906 + 2 NA Intergenic Intergenic -432108 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 375-310 chr5 2540380 2540696 + 2 NA Intergenic Intergenic -172053 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 279-89 chr13 34258276 34258451 + 2 NA Intergenic Intergenic -89680 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 220-83 chr12 28546728 28546878 + 2 NA intron (NM_001352082, intron 13 of 13) L1M5|LINE|L1 -356065 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 501-198 chr4 120819554 120820050 + 2 NA intron (NM_001300824, intron 4 of 13) intron (NM_001300824, intron 4 of 13) 103064 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 243-95 chr12 65329066 65329253 + 2 NA intron (NM_001031679, intron 4 of 6) intron (NM_001031679, intron 4 of 6) 50172 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 188-3 chr1 39216115 39216270 + 2 NA intron (NM_012090, intron 1 of 92) Charlie18a|DNA|hAT-Charlie 132025 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 243-247 chr2 209389101 209389272 + 2 NA Intergenic Intergenic -34861 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 524-170 chr4 46404874 46405239 + 2 NA Intergenic L1PA6|LINE|L1 -14928 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 277-318 chr5 50291806 50291989 + 2 NA Intergenic Intergenic 149391 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 347-307 chr3 75925417 75925691 + 2 NA Intergenic Intergenic -140005 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 587-21 chr11 2253216 2253787 + 2 NA Intergenic L1ME3|LINE|L1 17451 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 322-217 chr18 40853280 40853514 + 2 NA Intergenic MamGypLTR1d|LTR|Gypsy 667280 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 482-191 chr4 102173890 102174280 + 2 NA Intergenic L1M5|LINE|L1 150227 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 413-221 chr4 74666503 74666766 + 2 NA Intergenic MIR|SINE|MIR 127889 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 198-166 chr3 87747851 87748027 + 2 NA Intergenic L2a|LINE|L2 -44767 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 302-257 chr21 22706400 22706661 + 2 NA Intergenic Intergenic -372754 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 274-4 chr1 67516107 67516363 + 2 NA Intergenic AluJb|SINE|Alu -85833 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 348-269 chr20 53111830 53112073 + 2 NA intron (NM_173485, intron 1 of 2) MER45C|DNA|hAT-Tip100 -73332 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 251-396 chr8 101219134 101219312 + 2 NA Intergenic L1MA5|LINE|L1 -13159 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 357-115 chr14 57950970 57951228 + 2 NA Intergenic L1PA7|LINE|L1 -85007 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 422-293 chr8 20805453 20805849 + 2 NA Intergenic Intergenic -147982 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 264-137 chr14 80131967 80132199 + 2 NA Intergenic L2a|LINE|L2 -79336 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 196-8 chr1 77068440 77068582 + 2 NA TTS (NM_001320273) TTS (NM_001320273) 8368 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 851-6 chr11 13859224 13859794 + 2 NA intron (NR_149109, intron 3 of 3) intron (NR_149109, intron 3 of 3) 11107 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 293-267 chr3 87985409 87985598 + 2 NA intron (NM_000866, intron 1 of 1) MIR|SINE|MIR 2927 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 399-228 chr4 57593997 57594374 + 2 NA Intergenic (A)n|Simple_repeat|Simple_repeat 168313 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 334-582 chrUn_KI270442v1 168044 168281 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 347-394 chr5 46203445 46203687 + 2 NA Intergenic ALR/Alpha|Satellite|centr -507186 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 776-13 chr12 23483223 23483804 + 2 NA Intergenic Intergenic 101073 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 269-240 chr22 33565942 33566122 + 2 NA intron (NM_133642, intron 5 of 14) L1ME4a|LINE|L1 -129363 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 349-154 chr14 48792308 48792541 + 2 NA Intergenic L1PA7|LINE|L1 793956 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 279-172 chr2 57910570 57910779 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 3023 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 254-190 chr2 111012903 111013131 + 2 NA intron (NM_001371254, intron 15 of 18) L1ME2|LINE|L1 102571 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 209-92 chr14 67037060 67037260 + 2 NA intron (NM_001024218, intron 9 of 21) L1MB2|LINE|L1 -152280 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 312-255 chr2 124275072 124275378 + 2 NA intron (NM_130773, intron 3 of 23) THE1B|LTR|ERVL-MaLR 249938 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 118-61 chr8 32119446 32119535 + 2 NA intron (NR_104156, intron 3 of 3) MLT1J1|LTR|ERVL-MaLR 93272 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 496-289 chr8 96062256 96062610 + 2 NA Intergenic L1M2|LINE|L1 98373 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 268-449 chrX 101865125 101865298 + 2 NA Intergenic L1M1|LINE|L1 -7634 NR_159739 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 222-17 chr1 189455383 189455576 + 2 NA Intergenic Intergenic 1020531 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 462-168 chr3 4638505 4638818 + 2 NA intron (NM_001168272, intron 5 of 60) L1MC5a|LINE|L1 112929 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 250-277 chr3 72237706 72237905 + 2 NA Intergenic L2c|LINE|L2 86548 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 364-139 chr14_GL000225v1_random 125669 126021 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 188-219 chr9 78761554 78761703 + 2 NA Intergenic Intergenic 384038 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 255-470 chrX 101655969 101656178 + 2 NA exon (NM_177949, exon 6 of 6) exon (NM_177949, exon 6 of 6) 3777 NM_177949 9823 Hs.48924 NM_014782 ENSG00000184867 ARMCX2 ALEX2|GASP9 armadillo repeat containing X-linked 2 protein-coding 187-64 chr16 72267087 72267253 + 2 NA Intergenic Intergenic -94720 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 510-245 chr6 46658510 46658906 + 2 NA intron (NM_001204051, intron 2 of 8) intron (NM_001204051, intron 2 of 8) 5733 NM_001204051 9481 Hs.40510 NM_004277 ENSG00000153291 SLC25A27 UCP4 solute carrier family 25 member 27 protein-coding 869-36 chr3 56531677 56532498 + 2 NA Intergenic Intergenic -25069 NR_148375 285331 Hs.476399 NM_001012506 ENSG00000180376 CCDC66 - coiled-coil domain containing 66 protein-coding 379-223 chr3 148527374 148527692 + 2 NA Intergenic L1P4|LINE|L1 -170338 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 302-389 chr6 75344959 75345149 + 2 NA intron (NM_001300866, intron 4 of 6) intron (NM_001300866, intron 4 of 6) -38132 NR_125859 101928540 Hs.526972 NR_125859 LOC101928540 - uncharacterized LOC101928540 ncRNA 314-608 chr9 81869531 81869765 + 2 NA Intergenic L1PA15|LINE|L1 -43789 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 328-569 chr8 92745488 92745802 + 2 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 40415 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 347-568 chrX 128661589 128661824 + 2 NA Intergenic L2a|LINE|L2 -609303 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 189-168 chr5 153544089 153544201 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 51973 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 486-177 chr20 55122586 55122890 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -300305 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 405-69 chr12 91577877 91578161 + 2 NA Intergenic Intergenic -395202 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 512-43 chr10 112512697 112513012 + 2 NA intron (NM_001365712, intron 3 of 8) L1MA4A|LINE|L1 -65251 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 342-471 chr6 163623591 163623873 + 2 NA Intergenic AluSx|SINE|Alu 47752 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 431-136 chr2 104388118 104388362 + 2 NA intron (NR_037885, intron 2 of 2) intron (NR_037885, intron 2 of 2) 20092 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 335-332 chr3 1993920 1994201 + 2 NA Intergenic Intergenic -104743 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 240-194 chr18 71638077 71638250 + 2 NA Intergenic L1MC3|LINE|L1 -59207 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 322-407 chr5 8294656 8294901 + 2 NA Intergenic MER65D|LTR|ERV1 162786 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 558-128 chr3 4246998 4247368 + 2 NA Intergenic Intergenic -56121 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 369-90 chr12 114290269 114290484 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -48606 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 428-303 chr8 100045356 100045647 + 2 NA intron (NM_015668, intron 11 of 27) intron (NM_015668, intron 11 of 27) 40919 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 422-312 chr9 83582301 83582678 + 2 NA Intergenic Intergenic -40560 NM_001256915 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 281-287 chr3 53456920 53457104 + 2 NA Intergenic L2a|LINE|L2 -37599 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 172-128 chr8 14839432 14839565 + 2 NA intron (NM_139167, intron 1 of 7) L2b|LINE|L2 14012 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 382-113 chr14 66935559 66935817 + 2 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -253752 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 538-114 chr2 106774235 106774759 + 2 NA Intergenic LTR85a|LTR|Gypsy? 111531 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 356-421 chr6 52950404 52950584 + 2 NA Intergenic Intergenic -40796 NM_000847 2940 Hs.102484 NM_000847 ENSG00000174156 GSTA3 GSTA3-3|GTA3 glutathione S-transferase alpha 3 protein-coding 389-333 chr6 170587781 170587993 + 2 NA Intergenic MER4A1|LTR|ERV1 -3195 NM_001199461 5134 Hs.367900 NM_002598 ENSG00000071994 PDCD2 RP8|ZMYND7 programmed cell death 2 protein-coding 388-69 chr11 97999391 97999705 + 2 NA Intergenic Intergenic -1021401 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 256-358 chr6 53820813 53820982 + 2 NA intron (NM_018214, intron 1 of 13) L2b|LINE|L2 25892 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 626-77 chr2 197220279 197220874 + 2 NA intron (NM_153697, intron 1 of 9) intron (NM_153697, intron 1 of 9) 22585 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 285-195 chr2 59756161 59756387 + 2 NA Intergenic Intergenic 538566 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 433-7 chr1 158286440 158286740 + 2 NA Intergenic Intergenic -3333 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 136 chr1 38982406 38982536 + 2 NA Intergenic LOR1b|LTR|ERV1 -8773 NM_001136275 79647 Hs.293563 NM_024595 ENSG00000174574 AKIRIN1 C1orf108|STRF2 akirin 1 protein-coding 230-267 chr4 72648717 72648890 + 2 NA Intergenic Intergenic -79582 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 198-6 chr1 90756359 90756534 + 2 NA Intergenic MIRb|SINE|MIR -39144 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 344-150 chr15 36034015 36034257 + 2 NA Intergenic L1PREC2|LINE|L1 107280 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 305-189 chr16 80798693 80798908 + 2 NA intron (NM_152342, intron 1 of 6) L1ME4a|LINE|L1 5798 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 542-241 chr9 99538172 99538519 + 2 NA Intergenic L3|LINE|CR1 -163088 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 318-341 chr22 32915227 32915416 + 2 NA intron (NM_003490, intron 4 of 13) L2a|LINE|L2 91500 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 255-454 chr9 25824152 25824326 + 2 NA Intergenic L1PA13|LINE|L1 44183 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 386-268 chr4 156540088 156540430 + 2 NA Intergenic Intergenic 431540 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 840-52 chr9 88867487 88867992 + 2 NA Intergenic L1M1|LINE|L1 -121834 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 511-22 chr10 75157505 75157968 + 2 NA intron (NM_001174156, intron 2 of 5) L2a|LINE|L2 46080 NM_001174156 142891 Hs.744986 NM_144660 ENSG00000156671 SAMD8 HEL-177|SMSr sterile alpha motif domain containing 8 protein-coding 196-72 chr14 52108596 52108721 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -39599 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 1105-6 chr15 60795555 60796398 + 2 NA intron (NM_134261, intron 1 of 10) MIRc|SINE|MIR 114407 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 349-2 chr1 5522182 5522368 + 2 NA Intergenic Intergenic 340466 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 332-33 chr1 198813102 198813284 + 2 NA intron (NR_040073, intron 2 of 2) Tigger2b_Pri|DNA|TcMar-Tigger 45789 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 202-109 chr2 12359567 12359730 + 2 NA intron (NR_110196, intron 4 of 5) L1MD2|LINE|L1 160518 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 318-563 chr8 138193445 138193749 + 2 NA intron (NM_015912, intron 9 of 19) intron (NM_015912, intron 9 of 19) -110052 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 282-37 chr10 25754172 25754448 + 2 NA Intergenic Intergenic 102598 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 362-370 chr6 8807171 8807460 + 2 NA Intergenic L3|LINE|CR1 155106 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 238-64 chr11 25934158 25934359 + 2 NA Intergenic Intergenic -254865 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 543-249 chr8 123241445 123241821 + 2 NA promoter-TSS (NM_032847) promoter-TSS (NM_032847) -256 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 531-139 chr20 42833865 42834271 + 2 NA intron (NM_133170, intron 2 of 31) L1MC3|LINE|L1 -134675 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 219-209 chr20 54467861 54468056 + 2 NA Intergenic LTR78|LTR|ERV1 -7635 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 428-246 chr5 169026529 169026821 + 2 NA intron (NR_109897, intron 2 of 4) L1ME4a|LINE|L1 13448 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 422-230 chr5 7245781 7245997 + 2 NA Intergenic Intergenic 23465 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 353-108 chr12 40451495 40451705 + 2 NA intron (NM_173600, intron 43 of 173) intron (NM_173600, intron 43 of 173) 58206 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 236-380 chr9 69978157 69978344 + 2 NA Intergenic Intergenic -65331 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 248-138 chr16 13340515 13340722 + 2 NA Intergenic L2a|LINE|L2 439020 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 389-232 chr3 87684117 87684382 + 2 NA Intergenic Intergenic -108457 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 425-81 chr14 58989549 58989795 + 2 NA intron (NR_110547, intron 4 of 5) THE1B|LTR|ERVL-MaLR 161384 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 350-161 chr16 50054676 50054879 + 2 NA Intergenic AluSq|SINE|Alu -11193 NR_138093 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 341-403 chr4 150657987 150658307 + 2 NA intron (NM_001367550, intron 37 of 56) intron (NM_001367550, intron 37 of 56) 75996 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 181-110 chr4 114896829 114896920 + 2 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 216746 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 510-221 chr5 27247902 27248311 + 2 NA Intergenic Intergenic -209520 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 1012-12 chr5 25277459 25278162 + 2 NA intron (NR_136209, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat 86857 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 200-291 chr9 81903948 81904061 + 2 NA Intergenic Intergenic -9433 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 186-78 chr2 56940655 56940778 + 2 NA Intergenic Intergenic -754946 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 258-21 chr1 176242357 176242544 + 2 NA Intergenic L1MCa|LINE|L1 -35164 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 266-229 chr22 41120620 41120843 + 2 NA intron (NM_001429, intron 2 of 30) AluJr|SINE|Alu 28139 NM_001429 2033 Hs.517517 NM_001429 ENSG00000100393 EP300 KAT3B|MKHK2|RSTS2|p300 E1A binding protein p300 protein-coding 442-305 chr8 140201259 140201649 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -100919 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 316-173 chr14 66947173 66947370 + 2 NA intron (NM_020806, intron 8 of 22) L2c|LINE|L2 -242169 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 542 chr1 5698605 5699035 + 2 NA Intergenic MIRb|SINE|MIR 163921 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 282-417 chr7 4493485 4493673 + 2 NA Intergenic L1ME1|LINE|L1 -188716 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 682-10 chr10 66231361 66231915 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 660213 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 352-392 chr4 152826290 152826511 + 2 NA intron (NM_001287433, intron 2 of 8) L1PB3|LINE|L1 46446 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 171-129 chr7 109538427 109538571 + 2 NA Intergenic Intergenic 421714 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 334-592 chrX 146298148 146298348 + 2 NA Intergenic L1MA2|LINE|L1 -270376 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 179-71 chr3 110129305 110129457 + 2 NA Intergenic MIRc|SINE|MIR 526553 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 500-127 chr2 40113470 40113881 + 2 NA 3' UTR (NM_001112802, exon 8 of 8) 3' UTR (NM_001112802, exon 8 of 8) 196041 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 197-223 chr8 143008301 143008475 + 2 NA intron (NR_026913, intron 1 of 1) L1PA13|LINE|L1 10002 NR_026913 100133669 Hs.195309 NR_026913 LY6E-DT - LY6E divergent transcript ncRNA 258-54 chr10 68692576 68692737 + 2 NA 3' UTR (NM_030625, exon 12 of 12) 3' UTR (NM_030625, exon 12 of 12) -28583 NM_001282959 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 207-96 chr16 9192823 9193012 + 2 NA Intergenic Intergenic 101273 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 405-47 chr11 62727715 62727967 + 2 NA promoter-TSS (NR_037946) promoter-TSS (NR_037946) -232 NM_001318812 283237 Hs.31704 NM_173810 ENSG00000162222 TTC9C - tetratricopeptide repeat domain 9C protein-coding 277-172 chr19 52318474 52318671 + 2 NA intron (NM_144684, intron 4 of 4) L1MB2|LINE|L1 -17671 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 381-8 chr1 68532091 68532375 + 2 NA intron (NR_110671, intron 2 of 2) L1PA15|LINE|L1 -35151 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 320-200 chr17 11962536 11962845 + 2 NA intron (NM_001372, intron 68 of 68) intron (NM_001372, intron 68 of 68) 34682 NM_144680 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 314-233 chr18 4517259 4517518 + 2 NA Intergenic MER112|DNA|hAT-Charlie -62081 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 275-17 chr1 178023506 178023689 + 2 NA intron (NM_001356505, intron 7 of 33) L1MB3|LINE|L1 14379 NR_151492 111240474 NM_001356505 CRYZL2P-SEC16B - CRYZL2P-SEC16B readthrough protein-coding 366-445 chr8 88959880 88960179 + 2 NA Intergenic Intergenic -632546 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 352-496 chr7 49181552 49181892 + 2 NA Intergenic LTR87|LTR|ERVL? 257175 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 328-397 chr4 44158400 44158635 + 2 NA Intergenic Intergenic 141455 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 500-320 chr9 82622580 82622987 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 440359 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 361-97 chr12 25696970 25697197 + 2 NA Intergenic MER113A|DNA|hAT-Charlie -48505 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 371-229 chr21 22726050 22726299 + 2 NA Intergenic LTR45B|LTR|ERV1 -353110 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 273-186 chr18 13600755 13601021 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -10226 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 285-245 chr20 48083730 48083914 + 2 NA Intergenic L1ME1|LINE|L1 -93705 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 301-33 chr1 247662225 247662382 + 2 NA Intergenic L1MA8|LINE|L1 10738 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 314-389 chr3 118194780 118194957 + 2 NA Intergenic L1M2|LINE|L1 -446900 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 312-312 chr22 28260172 28260414 + 2 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -199576 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 490-194 chr4 33691634 33691951 + 2 NA Intergenic Intergenic 348101 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 217-226 chr3 80663541 80663729 + 2 NA Intergenic Intergenic -101262 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 903-7 chr12 6677081 6677532 + 2 NA intron (NM_001135734, intron 6 of 10) intron (NM_001135734, intron 6 of 10) 12069 NM_133476 171017 Hs.103315 NM_133476 ENSG00000126746 ZNF384 CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 zinc finger protein 384 protein-coding 484-162 chr22 16962869 16963237 + 2 NA intron (NM_001037814, intron 9 of 9) intron (NM_001037814, intron 9 of 9) 45169 NM_001037814 128954 Hs.434113 NM_001037814 ENSG00000215568 GAB4 - GRB2 associated binding protein family member 4 protein-coding 269-345 chr6 64807701 64807904 + 2 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -493616 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 257-194 chr2 81650260 81650407 + 2 NA Intergenic LTR10F|LTR|ERV1 -183387 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 416-135 chr16 69437504 69437910 + 2 NA intron (NM_030579, intron 1 of 4) L1MB4|LINE|L1 13112 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 280 chr1 4557444 4557688 + 2 NA Intergenic L1PA16|LINE|L1 -13921 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 237-309 chr5 151827628 151827813 + 2 NA intron (NM_001146040, intron 8 of 8) intron (NM_001146040, intron 8 of 8) -55544 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 282-409 chr6 119793597 119793817 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) -221472 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 353-252 chr2 122431917 122432154 + 2 NA Intergenic Intergenic 641446 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 510-293 chr9 70770378 70770859 + 2 NA intron (NM_001366143, intron 7 of 25) MIRb|SINE|MIR 39466 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 144-96 chr7 87068123 87068241 + 2 NA Intergenic Intergenic -8528 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 246-439 chrX 42528146 42528337 + 2 NA Intergenic L1MEi|LINE|L1 249922 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 437-69 chr14 30088213 30088594 + 2 NA Intergenic L1MA2|LINE|L1 -160556 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 351-499 chr8 132758014 132758250 + 2 NA intron (NM_144649, intron 2 of 9) intron (NM_144649, intron 2 of 9) 2450 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 716-45 chr20 56134440 56135115 + 2 NA Intergenic Intergenic -113955 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 367-66 chr10 120873837 120874121 + 2 NA intron (NM_018117, intron 11 of 28) intron (NM_018117, intron 11 of 28) 22617 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 328-332 chr22 22998423 22998677 + 2 NA Intergenic L1M2|LINE|L1 -71969 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 447-205 chr5 25635266 25635642 + 2 NA Intergenic L1PA15|LINE|L1 444501 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 328-560 chr8 55249335 55249538 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 147408 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 405-291 chr6 145472873 145473121 + 2 NA Intergenic L1M1|LINE|L1 213880 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 281-64 chr11 41423316 41423584 + 2 NA intron (NM_001258419, intron 1 of 6) Charlie15a|DNA|hAT-Charlie 36186 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 748 chr1 41340872 41341380 + 2 NA Intergenic Intergenic -20308 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 284-455 chrX 79425253 79425506 + 2 NA Intergenic MLT2A2|LTR|ERVL -57827 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 357-6 chr1 68731091 68731427 + 2 NA Intergenic L1MEd|LINE|L1 -234177 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 539-140 chr3 39770603 39771066 + 2 NA Intergenic L1M5|LINE|L1 -38080 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 391-219 chr22 26917004 26917360 + 2 NA intron (NR_110540, intron 2 of 2) AluSc|SINE|Alu 13890 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 486-32 chr10 63890608 63891051 + 2 NA Intergenic L1MB8|LINE|L1 -368939 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 473-172 chr3 34244073 34244415 + 2 NA Intergenic LTR16A|LTR|ERVL 445614 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 706-21 chr13 90266031 90266730 + 2 NA Intergenic Intergenic 35198 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 344-535 chrX 100333188 100333451 + 2 NA intron (NM_020766, intron 4 of 4) intron (NM_020766, intron 4 of 4) 76954 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 525-206 chr5 132246231 132246688 + 2 NA Intergenic L1MEf|LINE|L1 -11199 NM_001131027 8572 Hs.424312 NM_003687 ENSG00000131435 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 449-236 chr6 54787792 54788143 + 2 NA Intergenic Charlie17a|DNA|hAT-Charlie -58804 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 146-12 chr10 57105457 57105568 + 2 NA Intergenic Intergenic 199047 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 268-193 chr2 57408625 57408830 + 2 NA Intergenic L1MA2|LINE|L1 -498924 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 214-169 chr2 143986383 143986565 + 2 NA intron (NM_001354353, intron 7 of 9) intron (NM_001354353, intron 7 of 9) 49407 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 398-88 chr13 70794093 70794449 + 2 NA Intergenic Intergenic -220870 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 443-153 chr2 145642791 145643176 + 2 NA Intergenic Intergenic -944074 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 227-386 chr9 24436965 24437162 + 2 NA Intergenic LTR16E1|LTR|ERVL 108613 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 376-201 chr2 175655874 175656181 + 2 NA Intergenic L1PREC2|LINE|L1 346240 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 329-62 chr10 74899374 74899633 + 2 NA intron (NM_001370144, intron 3 of 15) AluSq2|SINE|Alu -13283 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 464-229 chr7 3862112 3862439 + 2 NA intron (NM_152744, intron 5 of 44) MER5B|DNA|hAT-Charlie -267410 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 285-259 chr3 18951548 18951733 + 2 NA Intergenic Intergenic -196870 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 307-128 chr14 26061932 26062231 + 2 NA Intergenic Intergenic 491349 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 318-194 chr16 35647423 35647655 + 2 NA Intergenic L1M5|LINE|L1 -99013 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 355-337 chr3 144856035 144856321 + 2 NA Intergenic Intergenic 883097 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 351-335 chr4 27257941 27258157 + 2 NA intron (NR_125921, intron 3 of 5) MER31B|LTR|ERV1 40570 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 221-207 chr3 195200065 195200212 + 2 NA intron (NM_152531, intron 2 of 3) intron (NM_152531, intron 2 of 3) 47782 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 654-58 chr19 44563706 44564208 + 2 NA Intergenic L1PB1|LINE|L1 -7040 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 349-171 chr14 87224892 87225101 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 319218 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 657-33 chr15 100295174 100295666 + 2 NA intron (NM_139057, intron 3 of 21) LTR50|LTR|ERVL 46555 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 277-10 chr1 73243077 73243351 + 2 NA Intergenic L1PA16|LINE|L1 -62956 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 233-80 chr12 106731709 106731927 + 2 NA intron (NM_001206691, intron 13 of 17) intron (NM_001206691, intron 13 of 17) -42864 NR_147137 55188 Hs.131306 NM_018157 ENSG00000111785 RIC8B RIC8|hSyn RIC8 guanine nucleotide exchange factor B protein-coding 273-41 chr10 24959652 24959919 + 2 NA Intergenic MamRep4096|DNA|hAT-Tip100 -7179 NM_020200 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 359-146 chr14 66675286 66675545 + 2 NA intron (NM_001024218, intron 1 of 21) AluSc|SINE|Alu 168008 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 389-317 chr6 54779412 54779615 + 2 NA Intergenic AluSz6|SINE|Alu -67258 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 193-4 chr1 39721079 39721195 + 2 NA Intergenic L1M5|LINE|L1 -17708 NM_001319293 10450 Hs.524690 NM_006112 ENSG00000084072 PPIE CYP-33|CYP33 peptidylprolyl isomerase E protein-coding 272-22 chr1 181942768 181942995 + 2 NA Intergenic L1PA13|LINE|L1 118831 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 260-244 chr20 43289712 43289965 + 2 NA Intergenic AluSx|SINE|Alu -99932 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 330-381 chr4 77847251 77847520 + 2 NA Intergenic AluSx3|SINE|Alu -15445 NM_020236 65008 Hs.532019 NM_020236 ENSG00000169288 MRPL1 BM022|L1MT|MRP-L1 mitochondrial ribosomal protein L1 protein-coding 273-456 chr8 118376387 118376572 + 2 NA intron (NM_001363274, intron 4 of 4) MLT1A0|LTR|ERVL-MaLR -244522 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 440-263 chr9 26286046 26286292 + 2 NA Intergenic L1M4|LINE|L1 219494 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 381-377 chr8 43624295 43624610 + 2 NA Intergenic ALR/Alpha|Satellite|centr 332010 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 124-42 chr20 40904098 40904192 + 2 NA Intergenic L1MC2|LINE|L1 -76568 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 601-9 chr1 242465979 242466366 + 2 NA intron (NM_001320272, intron 2 of 10) L2a|LINE|L2 -16690 NM_001195811 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 232-245 chr3 89291479 89291660 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 183948 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 238-20 chr1 181231352 181231511 + 2 NA Intergenic HERV16-int|LTR|ERVL -4957 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 512-166 chr3 68051638 68052033 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 47588 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 337-560 chr8 129278488 129278674 + 2 NA Intergenic L1ME3A|LINE|L1 -37341 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 465-299 chr8 126274125 126274462 + 2 NA Intergenic L1MEg|LINE|L1 -51202 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 340-347 chr22_KI270736v1_random 162978 163293 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 487-284 chr8 79350081 79350564 + 2 NA Intergenic Intergenic 18134 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 202-153 chr22 45512643 45512773 + 2 NA intron (NM_006487, intron 1 of 14) intron (NM_006487, intron 1 of 14) 9825 NM_006487 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 333-378 chr4 19825610 19825796 + 2 NA Intergenic L2a|LINE|L2 -426202 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 821-37 chr3 106786552 106787216 + 2 NA Intergenic Intergenic 453754 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 319-548 chr8 126515352 126515618 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 42993 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 352-472 chr6 146634983 146635291 + 2 NA intron (NM_024694, intron 1 of 35) intron (NM_024694, intron 1 of 35) 36165 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 196-134 chr2 125871508 125871656 + 2 NA Intergenic MIR|SINE|MIR 246403 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 480-80 chr14 69984095 69984545 + 2 NA intron (NM_001034852, intron 5 of 11) L1MD2|LINE|L1 6187 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 367-300 chr3 132925044 132925278 + 2 NA Intergenic Intergenic -113127 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 316-376 chr3 190539052 190539221 + 2 NA intron (NM_001364879, intron 1 of 10) intron (NM_001364879, intron 1 of 10) 25051 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 317-338 chr4 35337143 35337376 + 2 NA Intergenic Intergenic 906680 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 320-301 chr20 4443823 4444084 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -194666 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 427-219 chr5 174359146 174359520 + 2 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 22979 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 452-163 chr3 12667572 12667803 + 2 NA Intergenic MIR|SINE|MIR -3486 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 138-56 chr4 73947262 73947359 + 2 NA Intergenic Intergenic 34717 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 283-214 chr19 52457723 52457965 + 2 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 4291 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 289-137 chr14 48429784 48430057 + 2 NA Intergenic L1MCa|LINE|L1 -634906 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 557-57 chr15 89698382 89698708 + 2 NA intron (NM_001284395, intron 1 of 16) L1MEc|LINE|L1 7734 NM_020212 56964 Hs.177557 NM_020212 ENSG00000140527 WDR93 - WD repeat domain 93 protein-coding 308-308 chr3 130354166 130354462 + 2 NA intron (NM_001278298, intron 1 of 40) intron (NM_001278298, intron 1 of 40) 8798 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 221-306 chr8 124128688 124128868 + 2 NA intron (NR_103547, intron 1 of 4) L1MB3|LINE|L1 42744 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 299-186 chr19 24339201 24339443 + 2 NA Intergenic ALR/Alpha|Satellite|centr -175875 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 291-429 chr8 33623540 33623708 + 2 NA Intergenic MIRb|SINE|MIR -23518 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 338-51 chr10 26576922 26577138 + 2 NA TTS (NR_134472) TTS (NR_134472) 2277 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 329-132 chr12 108373672 108373839 + 2 NA Intergenic L2a|LINE|L2 -34444 NM_004072 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 692-92 chr7 48323638 48324307 + 2 NA intron (NM_152701, intron 27 of 61) THE1B|LTR|ERVL-MaLR 152514 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 291-81 chr11 105198338 105198598 + 2 NA Intergenic Intergenic -58699 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 281-275 chr22 44775151 44775347 + 2 NA intron (NM_181335, intron 1 of 11) intron (NM_181335, intron 1 of 11) 22691 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 257-373 chr7 9718030 9718203 + 2 NA Intergenic Intergenic 83846 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 182-109 chr3 110558082 110558235 + 2 NA Intergenic L1MA3|LINE|L1 511801 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 318-163 chr13 84119784 84120063 + 2 NA Intergenic Intergenic -20679 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 476-92 chr15 58512524 58512819 + 2 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -13936 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 265-289 chr5 3632128 3632342 + 2 NA Intergenic AluJb|SINE|Alu 36403 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 242-299 chr5 51626263 51626409 + 2 NA Intergenic MIR|SINE|MIR 242888 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 336-563 chr8 135028677 135028945 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 178876 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 474-46 chr11 40762794 40763064 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -469799 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 150-18 chr10 99446945 99447084 + 2 NA Intergenic L2b|LINE|L2 -16390 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 133-81 chr8 111226156 111226281 + 2 NA intron (NR_125418, intron 1 of 3) MER87B|LTR|ERV1 9985 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 215-94 chr15 25478603 25478803 + 2 NA Intergenic Intergenic -39647 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 301-58 chr11 25779560 25779852 + 2 NA Intergenic Intergenic -409417 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 219-75 chr12 83715097 83715252 + 2 NA Intergenic L1MC1|LINE|L1 1028019 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 339-274 chr2 119576316 119576594 + 2 NA intron (NR_073132, intron 6 of 24) L1PA13|LINE|L1 32006 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 701-68 chr4 44120599 44121268 + 2 NA Intergenic L1M5|LINE|L1 103871 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 298-419 chr7 15030367 15030600 + 2 NA Intergenic Intergenic -55625 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 285-274 chr3 89479860 89480032 + 2 NA 3' UTR (NM_005233, exon 17 of 17) 3' UTR (NM_005233, exon 17 of 17) 372325 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 622-31 chr14 74231491 74231980 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -7714 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 339-498 chr6 101662178 101662445 + 2 NA intron (NM_001166247, intron 3 of 16) MLT1O|LTR|ERVL-MaLR 263326 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 302-427 chr8 3994703 3994930 + 2 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1000098 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 257-410 chr8 89635051 89635231 + 2 NA Intergenic Intergenic 122570 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 230-173 chr2 79756187 79756313 + 2 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) -106891 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 189-129 chr3 94804541 94804688 + 2 NA Intergenic Intergenic -133649 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 269-131 chr15 27716940 27717181 + 2 NA Intergenic L1MD|LINE|L1 382255 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 526-43 chr11 60360178 60360663 + 2 NA Intergenic LTR28C|LTR|ERV1 -18065 NM_206938 58475 Hs.530735 NM_021201 ENSG00000166927 MS4A7 4SPAN2|CD20L4|CFFM4|MS4A8 membrane spanning 4-domains A7 protein-coding 193-153 chr4 63358418 63358555 + 2 NA Intergenic Intergenic 1050964 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 367-332 chr4 115378994 115379250 + 2 NA Intergenic Intergenic -265502 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 635-107 chr8 61542974 61543459 + 2 NA intron (NM_004318, intron 21 of 24) L1M4|LINE|L1 146595 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 313-367 chr3 187859529 187859729 + 2 NA Intergenic L1MEh|LINE|L1 -114161 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 335-245 chr2 59564140 59564337 + 2 NA Intergenic Intergenic 346530 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 337-209 chr17 73873222 73873534 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -44841 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 370-287 chr21 31294405 31294635 + 2 NA intron (NM_001353686, intron 2 of 27) MIRc|SINE|MIR 49834 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 375-144 chr15 61393549 61393916 + 2 NA Intergenic Intergenic -164430 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 205-41 chr10 106348410 106348591 + 2 NA Intergenic Intergenic 208335 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 287-152 chr16 9559848 9560112 + 2 NA Intergenic MIRb|SINE|MIR -104475 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 303-494 chr9 82324771 82324938 + 2 NA Intergenic L1PA7|LINE|L1 336082 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 696-4 chr1 48987815 48988435 + 2 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -211156 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 384-70 chr12 14431007 14431317 + 2 NA intron (NM_001286515, intron 2 of 12) intron (NM_001286515, intron 2 of 12) 45881 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 454-180 chr2 168813953 168814383 + 2 NA intron (NM_001171632, intron 2 of 14) intron (NM_001171632, intron 2 of 14) 11571 NM_052946 115677 Hs.189780 NM_052946 ENSG00000163072 NOSTRIN DaIP2 nitric oxide synthase trafficking protein-coding 147-51 chr2 235474809 235474908 + 2 NA Intergenic L1P4|LINE|L1 -19185 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 493-288 chr7 127463091 127463381 + 2 NA Intergenic CR1_Mam|LINE|CR1 -13647 NR_110024 100506682 Hs.148450 NR_110024 ENSG00000226770 LOC100506682 - uncharacterized LOC100506682 ncRNA 366-215 chr2 120648041 120648400 + 2 NA Intergenic AluSg|SINE|Alu -87648 NM_001371271 233-241 chr3 117326467 117326656 + 2 NA Intergenic Intergenic 364364 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 368-13 chr1 80241654 80241918 + 2 NA Intergenic MLT2B3|LTR|ERVL -293969 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 209-330 chr8 104495174 104495376 + 2 NA intron (NM_013437, intron 5 of 6) intron (NM_013437, intron 5 of 6) -10810 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 420-91 chr16 8459926 8460216 + 2 NA Intergenic L2c|LINE|L2 129767 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 362-8 chr1 48362933 48363293 + 2 NA intron (NM_019073, intron 9 of 12) intron (NM_019073, intron 9 of 12) 109091 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 228-243 chr4 58161313 58161466 + 2 NA Intergenic MER39|LTR|ERV1 374939 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 358-158 chr17 54566879 54567228 + 2 NA Intergenic Intergenic -333638 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 429-138 chr2 5121982 5122326 + 2 NA Intergenic Intergenic -465932 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 295-160 chr15 98060335 98060593 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 28289 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 499-55 chr12 33121053 33121464 + 2 NA Intergenic L1M1|LINE|L1 -224412 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 487-230 chr5 65387485 65387876 + 2 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 94240 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 421-34 chr10 93925883 93926166 + 2 NA Intergenic Intergenic 32046 NR_144337 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 489-248 chr8 13572274 13572649 + 2 NA intron (NM_001348082, intron 1 of 16) L1MB4|LINE|L1 5592 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 305-496 chr7 8463829 8464074 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 30342 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 393-362 chr8 109873413 109873721 + 2 NA Intergenic L1M5|LINE|L1 102204 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 174-121 chr6 41285634 41285747 + 2 NA intron (NR_136332, intron 1 of 4) intron (NR_136332, intron 1 of 4) 992 NM_001242589 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 452-2 chr1 53530109 53530525 + 2 NA intron (NM_147193, intron 3 of 9) MIR|SINE|MIR 70918 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 263-364 chr6 94732360 94732597 + 2 NA Intergenic Intergenic 844973 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 461-23 chr10 7363748 7364069 + 2 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 45433 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 188-120 chr22 43583260 43583440 + 2 NA intron (NM_198856, intron 22 of 29) MER92B|LTR|ERV1 67096 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 462-298 chr9 77632738 77633118 + 2 NA intron (NM_004297, intron 1 of 6) MER52A|LTR|ERV1 15394 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 272-440 chr8 36961672 36961912 + 2 NA Intergenic L1MB1|LINE|L1 177418 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 200-20 chr1 199625091 199625277 + 2 NA Intergenic AluSg4|SINE|Alu -402526 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 518-80 chr14 47854031 47854392 + 2 NA Intergenic MIRb|SINE|MIR -59197 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 560-91 chr2 198819153 198819505 + 2 NA Intergenic Intergenic -444232 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 283-19 chr1 118969287 118969565 + 2 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 18917 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 505-326 chr9 36813921 36814259 + 2 NA Intergenic L2a|LINE|L2 9509 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 279-337 chr5 107347368 107347519 + 2 NA Intergenic L1M4b|LINE|L1 323494 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 597-30 chr10 118857275 118857749 + 2 NA Intergenic Intergenic -102542 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 421-39 chr11 55768424 55768818 + 2 NA Intergenic L1MB1|LINE|L1 -4817 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 152-40 chr18 14115451 14115546 + 2 NA intron (NM_145287, intron 2 of 2) L1MB1|LINE|L1 16937 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 190-65 chr15 81268335 81268472 + 2 NA intron (NM_001352685, intron 5 of 19) MIR|SINE|MIR -28567 NM_004513 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 455-82 chr15 76526389 76526764 + 2 NA intron (NR_148227, intron 23 of 32) L1MEi|LINE|L1 -60071 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 322-469 chr6 129874997 129875264 + 2 NA Intergenic Intergenic -13815 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 418-256 chr7 27332261 27332580 + 2 NA Intergenic L1MD3|LINE|L1 -85191 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 201-14 chr1 177549845 177549974 + 2 NA Intergenic L1M4|LINE|L1 -150615 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 364-46 chr10 19447183 19447473 + 2 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 281222 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 340-188 chr16 54896460 54896716 + 2 NA Intergenic Intergenic 32190 NR_110454 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 376-159 chr18 77634224 77634559 + 2 NA Intergenic Intergenic 359336 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 279-416 chr8 82857598 82857814 + 2 NA Intergenic Intergenic -54398 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 547-140 chr3 98730436 98730833 + 2 NA intron (NR_046683, intron 1 of 4) MIRb|SINE|MIR -1602 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 223-230 chr3 177766954 177767106 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -49835 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 211-112 chr17 57737774 57737963 + 2 NA Intergenic Intergenic 7431 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 392-223 chr4 31632683 31632932 + 2 NA Intergenic Charlie26a|DNA|hAT-Charlie 126263 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 567-96 chr20 6156935 6157374 + 2 NA Intergenic L1PA16|LINE|L1 -33610 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 401-229 chr4 66929657 66929872 + 2 NA Intergenic Intergenic 492236 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 296-291 chr3 37486347 37486614 + 2 NA intron (NM_002207, intron 4 of 27) MIRb|SINE|MIR 34339 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 475-110 chr18 4839328 4839684 + 2 NA Intergenic MamRep605|LTR?|LTR? -241676 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 256-171 chr18 4272054 4272250 + 2 NA intron (NR_036489, intron 1 of 2) intron (NR_036489, intron 1 of 2) 7550 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 362-325 chr4 162585285 162585569 + 2 NA Intergenic Intergenic -421393 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 244-290 chr5 25285783 25285966 + 2 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 94921 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 687-72 chr3 6562152 6562683 + 2 NA Intergenic Intergenic 243032 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 424-199 chr4 104426354 104426724 + 2 NA Intergenic Intergenic -64426 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 264-264 chr3 5988431 5988625 + 2 NA Intergenic Intergenic -738273 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 326-351 chr3 122319331 122319585 + 2 NA Intergenic Intergenic -5790 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 205-286 chr8 129809110 129809267 + 2 NA Intergenic L1M3c|LINE|L1 -22564 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 136-75 chr6 56528334 56528430 + 2 NA intron (NM_001144770, intron 59 of 94) intron (NM_001144770, intron 59 of 94) 114507 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 804-62 chr7 16335624 16336112 + 2 NA intron (NM_001101417, intron 2 of 8) L1M1|LINE|L1 85670 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 250-446 chr8 127085597 127085749 + 2 NA non-coding (NR_109833, exon 1 of 1) non-coding (NR_109833, exon 1 of 1) -3452 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 338-164 chr14 60395038 60395218 + 2 NA Intergenic L1MA1|LINE|L1 71932 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 352-87 chr11 107193921 107194169 + 2 NA Intergenic Intergenic -175569 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 418-155 chr3 61820641 61820961 + 2 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 259230 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 456-242 chr5 18932826 18933116 + 2 NA Intergenic Intergenic 953301 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 261-196 chr2 151877142 151877322 + 2 NA intron (NM_000726, intron 4 of 13) MER58A|DNA|hAT-Charlie -48811 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 336-597 chrX 74738405 74738670 + 2 NA 3' UTR (NM_001008537, exon 4 of 4) 3' UTR (NM_001008537, exon 4 of 4) -123913 NM_016120 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 361-332 chr4 138534820 138535165 + 2 NA Intergenic L1ME3G|LINE|L1 225281 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 315-186 chr17 14692789 14692950 + 2 NA Intergenic L1M3de|LINE|L1 -321936 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 354-508 chrX 58417893 58418130 + 2 NA Intergenic ALR/Alpha|Satellite|centr -507378 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 233-185 chr2 157003036 157003163 + 2 NA Intergenic L2a|LINE|L2 -254606 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 321-344 chr21 24308208 24308409 + 2 NA non-coding (NR_109963, exon 2 of 4) non-coding (NR_109963, exon 2 of 4) 13069 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 343-407 chr4 181853893 181854142 + 2 NA Intergenic Intergenic -24044 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 317-236 chr2 99665858 99666055 + 2 NA intron (NM_001025108, intron 11 of 23) L2c|LINE|L2 -175939 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 370-165 chr15 95922709 95923018 + 2 NA Intergenic Intergenic 204978 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 378-465 chrX 110517791 110518112 + 2 NA Intergenic Intergenic -2361 NR_002718 6998 Hs.592361 NR_002718 ENSG00000225366 TDGF1P3 CR-3|CRIPTO|CRIPTO-3|CRIPTO3|TDGF1|TDGF2|TDGF3 teratocarcinoma-derived growth factor 1 pseudogene 3 pseudo 342-99 chr11 114356990 114357232 + 2 NA Intergenic L1MC2|LINE|L1 22928 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 293-406 chr7 54301105 54301340 + 2 NA Intergenic L1MC1|LINE|L1 -29475 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 214-107 chr15 68096246 68096390 + 2 NA intron (NM_016166, intron 2 of 13) L1M3|LINE|L1 41742 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 368-324 chr4 43166359 43166596 + 2 NA Intergenic Intergenic 273211 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 409-137 chr2 41742571 41742884 + 2 NA Intergenic Intergenic -134828 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 274-289 chr4 87864275 87864477 + 2 NA Intergenic MER61A|LTR|ERV1 29673 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 113-18 chr14 61145486 61145554 + 2 NA Intergenic Intergenic 135818 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 371-264 chr4 2782341 2782680 + 2 NA Intergenic L1PBa|LINE|L1 -10575 NM_001122681 6452 Hs.167679 NM_003023 ENSG00000087266 SH3BP2 3BP-2|3BP2|CRBM|CRPM|RES4-23 SH3 domain binding protein 2 protein-coding 297-310 chr3 185094893 185095102 + 2 NA intron (NM_001025266, intron 1 of 1) intron (NM_001025266, intron 1 of 1) 58063 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 273-362 chr5 91374290 91374480 + 2 NA intron (NR_138072, intron 5 of 7) intron (NR_138072, intron 5 of 7) 5712 NM_001329671 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 246-173 chr18 64548865 64549008 + 2 NA Intergenic L1MA4|LINE|L1 -288881 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 200-44 chr11 25932136 25932278 + 2 NA Intergenic Intergenic -256916 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 354-231 chr2 152475062 152475330 + 2 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 140022 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 412-148 chr2 21601960 21602273 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 108536 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 364-362 chr5 117712862 117713182 + 2 NA Intergenic L1PREC2|LINE|L1 -17339 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 382-176 chr2 33453332 33453544 + 2 NA intron (NM_170672, intron 2 of 18) MLT1F|LTR|ERVL-MaLR -4617 NM_001349979 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 165-16 chr11 82907257 82907379 + 2 NA intron (NM_001363481, intron 1 of 4) intron (NM_001363481, intron 1 of 4) -5578 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 540-126 chr2 238230014 238230500 + 2 NA intron (NR_026926, intron 1 of 2) AluJo|SINE|Alu 1420 NR_026926 151174 Hs.424165 NR_026925 ENSG00000186235 LINC02610 - long intergenic non-protein coding RNA 2610 ncRNA 432-65 chr12 106611995 106612271 + 2 NA intron (NM_001206691, intron 2 of 17) L1MB3|LINE|L1 10985 NM_001206691 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 220-377 chr8 127033530 127033676 + 2 NA Intergenic L1MC1|LINE|L1 20449 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 137-9 chr11 41152414 41152508 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 307175 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 781-43 chr3 91536200 91536768 + 2 NA Intergenic ALR/Alpha|Satellite|centr 2428863 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 331-333 chr22 44208516 44208765 + 2 NA TTS (NM_001137605) TTS (NM_001137605) 27715 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 468-195 chr3 60393723 60394049 + 2 NA intron (NM_001320900, intron 6 of 9) MER102b|DNA|hAT-Charlie 223984 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 241-372 chr7 52820649 52820825 + 2 NA Intergenic L1MA9|LINE|L1 -214896 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 220-32 chr1 225042586 225042727 + 2 NA intron (NM_001367479, intron 12 of 85) intron (NM_001367479, intron 12 of 85) 112981 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 341-567 chr9 106132910 106133165 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 438496 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 425-112 chr17 72946053 72946363 + 2 NA intron (NM_139177, intron 5 of 9) intron (NM_139177, intron 5 of 9) 146480 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 585-25 chr11 115026269 115026772 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -307057 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 446-324 chr9 13585855 13586296 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -154746 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 429-315 chr8 134044589 134044970 + 2 NA Intergenic Intergenic 158283 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 375-100 chr12 41582110 41582313 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger 144472 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 244-393 chrX 62913311 62913485 + 2 NA Intergenic Intergenic 437934 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 234-379 chr8 20668871 20669068 + 2 NA Intergenic Intergenic -54043 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 500-6 chr1 85004085 85004441 + 2 NA Intergenic L1PB1|LINE|L1 -7150 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 326-267 chr2 143873542 143873716 + 2 NA Intergenic Intergenic -63438 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 251-425 chr9 114293737 114293980 + 2 NA intron (NM_032888, intron 49 of 60) L1ME1|LINE|L1 -29165 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 519-25 chr10 65640421 65640756 + 2 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 69163 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 311-494 chr8 36999609 36999773 + 2 NA Intergenic Intergenic 215317 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 510-31 chr10 73317069 73317438 + 2 NA intron (NM_001367801, intron 10 of 27) AluSx|SINE|Alu 41501 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 593-158 chr8 136212241 136212756 + 2 NA Intergenic Intergenic -318300 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 539-11 chr1 115240315 115240700 + 2 NA Intergenic Intergenic -42527 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 249-456 chr9 119082886 119083105 + 2 NA Intergenic Intergenic 286440 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 242-133 chr16 83037219 83037349 + 2 NA intron (NM_001220489, intron 3 of 12) MIRb|SINE|MIR -46986 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 350-421 chr5 152930838 152931093 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 41384 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 399-163 chr2 136478006 136478315 + 2 NA Intergenic L1M2a1|LINE|L1 -287385 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 297-366 chr5 42045599 42045824 + 2 NA Intergenic L1MC|LINE|L1 120430 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 513-17 chr1 232114738 232115088 + 2 NA Intergenic Intergenic 189079 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 540-67 chr14 56871688 56872213 + 2 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 58792 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 533-31 chr12 3377851 3378240 + 2 NA Intergenic L1PA7|LINE|L1 -3304 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 324-137 chr13 59077838 59078112 + 2 NA Intergenic Intergenic -844858 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 371-321 chr5 114138383 114138581 + 2 NA Intergenic Intergenic -223588 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 214-81 chr12 38039476 38039630 + 2 NA Intergenic ALR/Alpha|Satellite|centr -277221 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 314-3 chr1 29770303 29770591 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 267165 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 504-263 chr8 118240593 118241017 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -128986 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 231-300 chr5 171140748 171140916 + 2 NA intron (NM_022897, intron 14 of 27) intron (NM_022897, intron 14 of 27) -168416 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 229-342 chr6 136217095 136217274 + 2 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 33127 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 276-440 chr8 43899940 43900106 + 2 NA Intergenic ALR/Alpha|Satellite|centr 607581 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 390-156 chr18 53618829 53619117 + 2 NA Intergenic L1MC5a|LINE|L1 -37914 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 142-10 chr11 71227557 71227690 + 2 NA Intergenic L1MD1|LINE|L1 -2827 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 345-482 chr7 13096940 13097241 + 2 NA Intergenic Intergenic 409457 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 251-8 chr1 88495349 88495552 + 2 NA Intergenic Intergenic -188694 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 357-226 chr2 194780234 194780445 + 2 NA Intergenic Intergenic 49744 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 222-310 chr5 163287783 163287962 + 2 NA Intergenic Intergenic -149699 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 329-93 chr11 44190822 44191117 + 2 NA intron (NM_207122, intron 8 of 13) intron (NM_207122, intron 8 of 13) 94772 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 324-36 chr1 200390777 200391045 + 2 NA Intergenic Intergenic -17119 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 407-322 chr8 86574069 86574300 + 2 NA 3' UTR (NM_019098, exon 18 of 18) 3' UTR (NM_019098, exon 18 of 18) 59749 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 425-19 chr1 206880288 206880707 + 2 NA Intergenic MLT2B4|LTR|ERVL 14688 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 285-434 chr8 130812778 130813020 + 2 NA intron (NM_001115, intron 14 of 17) (AT)n|Simple_repeat|Simple_repeat 228010 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 363-270 chr21 27431016 27431224 + 2 NA Intergenic L2|LINE|L2 -291259 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 592-125 chr4 58699655 58700135 + 2 NA Intergenic Intergenic -163567 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 477-40 chr10 69251803 69252110 + 2 NA intron (NM_025130, intron 12 of 17) AluSx|SINE|Alu -18044 NM_033498 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 373-374 chr7 34664944 34665280 + 2 NA intron (NM_207172, intron 1 of 8) intron (NM_207172, intron 1 of 8) 6873 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 497-84 chr15 86517066 86517480 + 2 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -200305 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 173-56 chr18 7523673 7523778 + 2 NA Intergenic Intergenic -43591 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 289-492 chr9 100662876 100663147 + 2 NA Intergenic MamTip1|DNA|hAT-Tip100 84932 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 329-276 chr2 78542326 78542521 + 2 NA Intergenic L1PBa1|LINE|L1 -3108 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 279-332 chr5 100721038 100721194 + 2 NA Intergenic Intergenic 95449 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 549-61 chr14 82454842 82455205 + 2 NA Intergenic AluSx1|SINE|Alu -187609 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 191-27 chr10 85973628 85973811 + 2 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 291069 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 227-186 chr2 147831561 147831718 + 2 NA Intergenic L1ME3|LINE|L1 -12878 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 232-267 chr4 60619665 60619812 + 2 NA Intergenic LTR16|LTR|ERVL -302881 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 384-11 chr1 89880900 89881179 + 2 NA intron (NM_001134479, intron 2 of 2) intron (NM_001134479, intron 2 of 2) 59100 NM_018103 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 375-437 chr9 11840854 11841097 + 2 NA Intergenic L1PA10|LINE|L1 -852410 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 572-192 chr9 88618092 88618535 + 2 NA Intergenic L1PA15|LINE|L1 83135 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 369-352 chr6 51707536 51707774 + 2 NA intron (NM_138694, intron 60 of 66) L2c|LINE|L2 85785 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 290-429 chr7 71648789 71648940 + 2 NA intron (NM_022479, intron 6 of 10) intron (NM_022479, intron 6 of 10) -341094 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 489-207 chr5 71850649 71851001 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 131550 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 208-59 chr12 55877429 55877573 + 2 NA Intergenic L1M4c|LINE|L1 -34565 NR_073606 4327 Hs.591033 NM_002429 ENSG00000123342 MMP19 CODA|MMP18|RASI-1 matrix metallopeptidase 19 protein-coding 729-8 chr10 43535757 43536273 + 2 NA Intergenic AluSq2|SINE|Alu 32444 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 276-96 chr12 10025712 10025956 + 2 NA intron (NR_120484, intron 2 of 2) intron (NR_120484, intron 2 of 2) 4772 NR_120484 102724020 Hs.737731 NR_120484 ENSG00000256803 LOC102724020 - uncharacterized LOC102724020 ncRNA 368-95 chr12 14306849 14307178 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -58619 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 350-559 chr9 132763503 132763769 + 2 NA intron (NM_001317959, intron 13 of 14) MER57B2|LTR|ERV1 93172 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 421-91 chr15 26325204 26325530 + 2 NA Intergenic MER4B|LTR|ERV1 209554 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 356-448 chr7 40844845 40845081 + 2 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 134976 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 376-180 chr2 59922160 59922357 + 2 NA Intergenic Intergenic 460778 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 324-349 chr3 80955971 80956220 + 2 NA Intergenic ALR/Alpha|Satellite|centr -37773 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 337-164 chr14 101353882 101354216 + 2 NA Intergenic L1M7|LINE|L1 53873 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 675-75 chr5 130748986 130749393 + 2 NA Intergenic L1MA7|LINE|L1 416067 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 336-88 chr11 29853043 29853333 + 2 NA Intergenic L1PA15-16|LINE|L1 129205 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 329-500 chr6 71483823 71484104 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 62936 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 148-73 chr5 136341543 136341642 + 2 NA intron (NM_020389, intron 2 of 11) intron (NM_020389, intron 2 of 11) 23884 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 238-34 chr10 31720014 31720228 + 2 NA Intergenic Intergenic 188805 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 592-73 chr19 23353580 23354165 + 2 NA Intergenic L1PB1|LINE|L1 41599 NM_001300951 7644 Hs.58834 NM_003430 ENSG00000167232 ZNF91 HPF7|HTF10 zinc finger protein 91 protein-coding 216-184 chr2 183563692 183563886 + 2 NA Intergenic L1MEd|LINE|L1 439346 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 534-65 chr12 95774232 95774631 + 2 NA intron (NM_001329701, intron 2 of 9) MIR|SINE|MIR 15764 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 272-31 chr1 246972887 246973076 + 2 NA intron (NM_001204221, intron 4 of 5) intron (NM_001204221, intron 4 of 5) 35076 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 846-18 chr17 33721835 33722510 + 2 NA intron (NM_001094, intron 1 of 9) THE1B|LTR|ERVL-MaLR -188412 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 541-48 chr12 58776569 58776992 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 4936 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 291-173 chr17 53238413 53238597 + 2 NA Intergenic L1MEg|LINE|L1 253000 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 474-206 chr4 47124973 47125382 + 2 NA intron (NM_000812, intron 3 of 8) L1M2|LINE|L1 93610 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 524-234 chr7 37471120 37471594 + 2 NA Intergenic Intergenic -22031 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 335-366 chr3 146798535 146798786 + 2 NA Intergenic L1ME3Cz|LINE|L1 -123263 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 473-222 chr5 94339312 94339752 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -227833 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 500-241 chr6 23940921 23941242 + 2 NA Intergenic Intergenic -185134 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 355-544 chrX 81787742 81788028 + 2 NA Intergenic L1PB3|LINE|L1 585783 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 352-79 chr11 58389443 58389674 + 2 NA Intergenic Intergenic 13851 NM_001005469 441608 Hs.553826 NM_001005469 ENSG00000172769 OR5B3 OR11-239|OR5B13|OST129 olfactory receptor family 5 subfamily B member 3 protein-coding 280-288 chr4 64245339 64245562 + 2 NA Intergenic L1ME3|LINE|L1 164000 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 199-69 chr16 13495891 13496037 + 2 NA Intergenic L1M6|LINE|L1 -424193 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 409-170 chr20 15462183 15462556 + 2 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 265529 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 349-114 chr12 15975820 15976105 + 2 NA intron (NM_001300779, intron 5 of 7) L1MC4|LINE|L1 64630 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 410-69 chr12 63773727 63774060 + 2 NA Intergenic Intergenic -6016 NM_014254 10329 Hs.216386 NM_014254 ENSG00000118600 RXYLT1 HP10481|MDDGA10|TMEM5 ribitol xylosyltransferase 1 protein-coding 274-75 chr11 63116725 63116939 + 2 NA intron (NM_001136506, intron 4 of 9) L1M4|LINE|L1 27389 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 314-464 chr5 64404738 64404942 + 2 NA Intergenic Intergenic -101175 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 262-305 chr4 33684700 33684922 + 2 NA Intergenic Intergenic 355082 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 306-427 chr6 40554878 40555123 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 32364 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 411-85 chr14 43690254 43690575 + 2 NA Intergenic Intergenic 816869 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 249-134 chr15 96439750 96439981 + 2 NA Intergenic AluJo|SINE|Alu 106100 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 342-528 chr8 120597870 120598209 + 2 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) 152620 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 215-229 chr4 89356017 89356221 + 2 NA Intergenic L1M5|LINE|L1 -48319 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 345-176 chr15 69821802 69821980 + 2 NA Intergenic Intergenic -13343 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 153-66 chr3 22686164 22686288 + 2 NA Intergenic L2|LINE|L2 516352 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 246-31 chr10 18912744 18912975 + 2 NA Intergenic Intergenic -135942 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 595-103 chr21 32234772 32235222 + 2 NA Intergenic Intergenic 44052 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 233-79 chr12 60653183 60653355 + 2 NA Intergenic L1MC|LINE|L1 963899 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 333-100 chr11 116666253 116666487 + 2 NA Intergenic L1M3f|LINE|L1 26948 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 236-39 chr10 44474082 44474238 + 2 NA Intergenic L1MB7|LINE|L1 -89063 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 231-42 chr10 111463745 111463900 + 2 NA Intergenic Intergenic 349531 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 610-45 chr14 35469802 35470221 + 2 NA Intergenic Intergenic -64153 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 244-162 chr2 70435997 70436190 + 2 NA Intergenic Intergenic 45547 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 482-249 chr7 53101803 53102171 + 2 NA Intergenic L1M4|LINE|L1 66354 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 302-131 chr14 68597972 68598159 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 30722 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 571-121 chr4 51971434 51971775 + 2 NA Intergenic L1PA10|LINE|L1 48759 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 507-183 chr4 64484798 64485237 + 2 NA Intergenic Intergenic -75557 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 177-140 chr6 106039183 106039280 + 2 NA Intergenic Intergenic -47105 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 248-160 chr18 72385508 72385722 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 158727 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 174-39 chr14 27125088 27125231 + 2 NA Intergenic Intergenic 216517 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 365-226 chr2 224610423 224610607 + 2 NA Intergenic L1MB3|LINE|L1 -25118 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 612-43 chr14 87680305 87680737 + 2 NA Intergenic Intergenic -25227 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 434 chr1 13979335 13979617 + 2 NA Intergenic L1MEg|LINE|L1 230061 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 680-106 chr6 169353779 169354392 + 2 NA Intergenic L1PA7|LINE|L1 -99971 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 340-174 chr15 79716531 79716710 + 2 NA Intergenic L1ME4a|LINE|L1 180377 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 328-245 chr2 13275788 13276109 + 2 NA Intergenic Intergenic -268935 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 276-491 chrX 77175688 77175897 + 2 NA Intergenic MIR3|SINE|MIR -161260 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 343-273 chr2 137814227 137814521 + 2 NA Intergenic Intergenic 113558 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 480-286 chr8 38376125 38376462 + 2 NA intron (NM_023034, intron 1 of 23) intron (NM_023034, intron 1 of 23) 5978 NM_023034 54904 Hs.434966 NM_017778 ENSG00000147548 NSD3 KMT3F|KMT3G|WHISTLE|WHSC1L1|pp14328 nuclear receptor binding SET domain protein 3 protein-coding 475-167 chr22 27426722 27427037 + 2 NA Intergenic MIR|SINE|MIR 116228 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 241-413 chr8 137064292 137064481 + 2 NA Intergenic L1MEb|LINE|L1 349202 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 490-48 chr11 8276476 8276886 + 2 NA Intergenic L2c|LINE|L2 -7894 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 440-183 chr4 106235100 106235515 + 2 NA exon (NM_001163435, exon 15 of 26) exon (NM_001163435, exon 15 of 26) -80303 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 370-127 chr13 41516594 41516906 + 2 NA Intergenic Intergenic 51645 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 316-452 chr5 107821047 107821260 + 2 NA Intergenic Intergenic -150216 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 370-53 chr10 71196150 71196426 + 2 NA Intergenic Intergenic -16282 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 178-116 chr6 4025612 4025721 + 2 NA intron (NR_146785, intron 1 of 20) intron (NR_146785, intron 1 of 20) 4366 NR_146784 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 408-295 chr6 78097770 78098079 + 2 NA Intergenic Intergenic 441385 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 582-62 chr19 28260560 28261120 + 2 NA Intergenic Intergenic -345848 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 248-55 chr10 106617910 106618143 + 2 NA intron (NM_001206569, intron 21 of 25) intron (NM_001206569, intron 21 of 25) 477861 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 347-91 chr12 31826844 31827063 + 2 NA Intergenic AluSz|SINE|Alu -34655 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 264-318 chr5 37477002 37477183 + 2 NA intron (NM_001345998, intron 7 of 17) L1ME2|LINE|L1 97774 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 589-63 chr2 46676047 46676514 + 2 NA Intergenic L1M4c|LINE|L1 -22680 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 368-416 chr7 27460969 27461170 + 2 NA Intergenic Intergenic -154905 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 404-150 chr2 3834556 3834903 + 2 NA intron (NM_001287444, intron 10 of 10) intron (NM_001287444, intron 10 of 10) 127887 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 493-51 chr11 88158101 88158447 + 2 NA intron (NM_022337, intron 1 of 2) L1PA16|LINE|L1 17169 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 435-189 chr5 26146723 26147044 + 2 NA Intergenic (TTTCTG)n|Simple_repeat|Simple_repeat 891703 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 411-91 chr14 72858973 72859276 + 2 NA intron (NM_001280542, intron 1 of 10) L1MC5|LINE|L1 33525 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 315-134 chr14 59702598 59702771 + 2 NA intron (NM_021136, intron 3 of 8) L2a|LINE|L2 -55664 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 414-368 chrY 56829521 56829772 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat -124609 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 469-154 chr20 39157693 39158050 + 2 NA Intergenic Intergenic 66877 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 467-184 chr3 110994607 110994992 + 2 NA Intergenic MER53|DNA|hAT 75160 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 176-118 chr5 165974344 165974486 + 2 NA Intergenic Intergenic 951955 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 442-147 chr2 170371597 170371918 + 2 NA intron (NM_001083615, intron 9 of 33) intron (NM_001083615, intron 9 of 33) -20814 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 242-70 chr12 18448073 18448267 + 2 NA intron (NM_001288774, intron 18 of 32) Charlie7|DNA|hAT-Charlie 186630 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 306-308 chr3 54491910 54492202 + 2 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 147801 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 147-46 chr2 122212514 122212628 + 2 NA Intergenic MIRb|SINE|MIR 456920 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 597-37 chr11 91990274 91990649 + 2 NA Intergenic Intergenic -234573 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 267-127 chr15 61707600 61707795 + 2 NA Intergenic L1MC4a|LINE|L1 -22221 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 515-99 chr18 59274661 59274956 + 2 NA Intergenic Intergenic -1354 NM_013435 30062 Hs.278957 NM_013435 ENSG00000134438 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 295-394 chr6 1304583 1304858 + 2 NA Intergenic L1PB4|LINE|L1 -7378 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 222-177 chr2 76689208 76689381 + 2 NA Intergenic Intergenic -296671 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 243-68 chr11 42287330 42287493 + 2 NA Intergenic L2a|LINE|L2 -33721 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 485-197 chr4 22200159 22200612 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie 139281 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 592-180 chr8 138087869 138088224 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -4501 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 459-290 chr8 19177005 19177245 + 2 NA Intergenic Intergenic 68397 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 207-139 chr2 63126452 63126613 + 2 NA intron (NR_148704, intron 18 of 18) MIRb|SINE|MIR -6990 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 322-182 chr16 17181381 17181572 + 2 NA intron (NM_022166, intron 5 of 11) intron (NM_022166, intron 5 of 11) 46972 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 532-227 chr6 78173339 78173770 + 2 NA Intergenic Intergenic 365755 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 323-572 chr9 14578422 14578591 + 2 NA Intergenic L1MA4|LINE|L1 -46429 NM_001369458 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 153-54 chr2 139421369 139421478 + 2 NA Intergenic L2a|LINE|L2 524099 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 170-56 chr16 3441125 3441246 + 2 NA intron (NM_152457, intron 2 of 3) intron (NM_152457, intron 2 of 3) 2319 NM_152457 146434 Hs.88630 NM_152457 ENSG00000167981 ZNF597 HIT-4 zinc finger protein 597 protein-coding 292-127 chr13 96539005 96539232 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 111889 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 770-21 chr15 61320174 61320895 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -91232 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 208-77 chr14 79692765 79692928 + 2 NA intron (NR_073547, intron 17 of 20) intron (NR_073547, intron 17 of 20) 413466 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 294-495 chr9 74406653 74406812 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 35201 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 458-194 chr4 150025662 150026036 + 2 NA Intergenic Intergenic -52596 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 476-123 chr18 70507470 70507853 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -123070 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 329-7 chr1 60021492 60021813 + 2 NA intron (NM_152377, intron 8 of 11) L2a|LINE|L2 52118 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 231-67 chr12 23983866 23984021 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -32911 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 313-223 chr19 36750467 36750733 + 2 NA exon (NM_001193552, exon 5 of 5) exon (NM_001193552, exon 5 of 5) 22207 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 131-55 chr4 49043648 49043750 + 2 NA intron (NM_001286791, intron 13 of 15) intron (NM_001286791, intron 13 of 15) 57057 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 344-207 chr19 30347387 30347597 + 2 NA Intergenic Intergenic -24892 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 366-337 chr5 17716647 17716963 + 2 NA Intergenic L1MC1|LINE|L1 -61167 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 315-12 chr1 81390121 81390300 + 2 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 83815 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 158-9 chr10 2486904 2487019 + 2 NA intron (NR_136146, intron 1 of 2) intron (NR_136146, intron 1 of 2) 14501 NR_136146 105376351 Hs.343482 NR_136146 LINC02645 - long intergenic non-protein coding RNA 2645 ncRNA 297-107 chr12 42172054 42172264 + 2 NA non-coding (NR_135139, exon 5 of 7) non-coding (NR_135139, exon 5 of 7) -27285 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 336-384 chr3 184282164 184282369 + 2 NA intron (NM_014693, intron 7 of 18) intron (NM_014693, intron 7 of 18) 6244 NM_001100121 9718 Hs.146161 NM_001037324 ENSG00000145194 ECE2 EEF1AKMT4 endothelin converting enzyme 2 protein-coding 171-118 chr7 14312920 14313059 + 2 NA intron (NM_001350717, intron 22 of 24) Charlie1a|DNA|hAT-Charlie -321564 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 135-31 chr19 44303156 44303239 + 2 NA intron (NM_004234, intron 2 of 4) (TA)n|Simple_repeat|Simple_repeat 1828 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 500-280 chr7 114729571 114729983 + 2 NA Intergenic L1MA4A|LINE|L1 76432 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 481-124 chr18 52196072 52196390 + 2 NA Intergenic HAL1M8|LINE|L1 -143966 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 342-244 chr2 105669509 105669811 + 2 NA Intergenic LTR33A|LTR|ERVL -59101 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 190-43 chr12 98881738 98881885 + 2 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) 12963 NM_001352217 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 246-95 chr12 60449169 60449329 + 2 NA Intergenic Intergenic 759879 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 313-217 chr18 77538325 77538574 + 2 NA Intergenic Intergenic 288601 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 151-73 chr6 146765836 146765964 + 2 NA intron (NM_024694, intron 28 of 35) L1MEh|LINE|L1 37924 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 235-255 chr4 63105590 63105761 + 2 NA Intergenic Intergenic -943910 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 633-107 chr6 156386344 156386959 + 2 NA Intergenic L1MA7|LINE|L1 7901 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 521-229 chr7 42629946 42630423 + 2 NA Intergenic MER113|DNA|hAT-Charlie 76263 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 487-215 chr4 91717852 91718188 + 2 NA Intergenic Intergenic 559282 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 277-97 chr13 31880326 31880500 + 2 NA intron (NR_027062, intron 1 of 3) MER102a|DNA|hAT-Charlie 33630 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 205-99 chr15 58569539 58569711 + 2 NA 3' UTR (NM_000236, exon 9 of 9) 3' UTR (NM_000236, exon 9 of 9) -70890 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 243-221 chr2 107369877 107370084 + 2 NA Intergenic L1MA6|LINE|L1 -20455 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 236-211 chr22 49938424 49938557 + 2 NA Intergenic Intergenic 19856 NM_001284318 79174 Hs.211282 NM_024324 ENSG00000184164 CRELD2 - cysteine rich with EGF like domains 2 protein-coding 272-13 chr1 147366407 147366575 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie 123349 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 531-48 chr12 96056814 96057170 + 2 NA Intergenic MER57D|LTR|ERV1 -13472 NM_001256643 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 323-582 chr9 76971847 76972143 + 2 NA Intergenic L1MEf|LINE|L1 -47660 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 352-553 chr9 9174153 9174353 + 2 NA intron (NM_002839, intron 10 of 45) L2a|LINE|L2 316235 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 374-151 chr18 3951351 3951591 + 2 NA intron (NM_001242761, intron 3 of 11) (TTTA)n|Simple_repeat|Simple_repeat -10882 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 288-315 chr5 16105022 16105221 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 74670 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 368-253 chr2 197653758 197653998 + 2 NA intron (NM_144629, intron 1 of 8) MER113|DNA|hAT-Charlie 21709 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 955-2 chr1 241509949 241510686 + 2 NA intron (NM_000143, intron 4 of 9) L1MD3|LINE|L1 9468 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 719-9 chr10 37321033 37321608 + 2 NA intron (NR_104061, intron 3 of 4) LTR9A1|LTR|ERV1 12134 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 405-40 chr10 106065912 106066196 + 2 NA Intergenic Intergenic -74111 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 364-86 chr11 38172881 38173228 + 2 NA Intergenic L1MC|LINE|L1 234453 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 208-136 chr2 192454803 192455006 + 2 NA Intergenic L1MA1|LINE|L1 -259971 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 331-172 chr15 59028375 59028592 + 2 NA intron (NM_001270530, intron 1 of 13) MER44A|DNA|TcMar-Tigger 40337 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 143-73 chr6 24880496 24880608 + 2 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -3187 NM_001286447 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 291-56 chr10 67321637 67321891 + 2 NA intron (NM_001127384, intron 5 of 17) L2|LINE|L2 81646 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 267-420 chr8 82362296 82362499 + 2 NA Intergenic MIR|SINE|MIR -520111 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 276-146 chr14 48677879 48678039 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -882945 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 228-366 chr9 28027945 28028112 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -454162 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 486-209 chr3 126428442 126428792 + 2 NA intron (NM_182628, intron 13 of 16) L1MC1|LINE|L1 33708 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 313-337 chr3 48618911 48619068 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 2780 NM_001008269 440955 Hs.631922 NM_001008269 ENSG00000183396 TMEM89 - transmembrane protein 89 protein-coding 373-346 chr5 173590583 173590933 + 2 NA Intergenic Intergenic 11124 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 209-329 chr8 103806715 103806864 + 2 NA intron (NM_001348497, intron 3 of 22) L2|LINE|L2 -12431 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 390-190 chr2 81740275 81740533 + 2 NA Intergenic Intergenic -273458 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 196-176 chr3 193849776 193849930 + 2 NA Intergenic Intergenic -5844 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 270-435 chrX 7785182 7785341 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -57001 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 419-129 chr19 49942458 49942801 + 2 NA Intergenic L1M2|LINE|L1 9565 NR_039906 100616483 NR_039906 ENSG00000283842 MIR4751 - microRNA 4751 ncRNA 325-543 chr8 111600842 111601027 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 224295 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 285-301 chr4 32636841 32637048 + 2 NA Intergenic Intergenic 285906 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 313-435 chr5 88058547 88058751 + 2 NA Intergenic Intergenic 210196 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 360-190 chr19 22723935 22724141 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 60113 NM_001080409 7652 Hs.737077 NM_001080409 ENSG00000213973 ZNF99 C19orf9|F8281 zinc finger protein 99 protein-coding 206-205 chr5 44408381 44408533 + 2 NA intron (NR_108034, intron 2 of 2) L1ME2z|LINE|L1 -19037 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 468-4 chr1 67314969 67315286 + 2 NA intron (NM_001319233, intron 2 of 15) intron (NM_001319233, intron 2 of 15) 7763 NM_001559 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 239-348 chr6 48860556 48860745 + 2 NA Intergenic Intergenic 602603 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 217-277 chr4 168959399 168959523 + 2 NA Intergenic L1ME1|LINE|L1 50794 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 329-281 chr2 105420598 105420894 + 2 NA intron (NM_201557, intron 1 of 5) MER1B|DNA|hAT-Charlie 17767 NM_001318897 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 235-125 chr16 60429822 60430004 + 2 NA Intergenic L2|LINE|L2 -70120 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 211-115 chr17 72791279 72791488 + 2 NA intron (NM_001352692, intron 6 of 9) AluSz|SINE|Alu -150911 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 329-200 chr16 10221040 10221316 + 2 NA Intergenic Intergenic -38270 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 432-158 chr20 46467350 46467748 + 2 NA Intergenic Intergenic -2257 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 352-132 chr13 114088217 114088499 + 2 NA intron (NM_001320821, intron 1 of 25).2 intron (NM_001320821, intron 1 of 25).2 -10403 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 551-115 chr3 18512512 18512899 + 2 NA intron (NR_125803, intron 4 of 6) MIRb|SINE|MIR -67113 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 286-337 chr5 8247068 8247324 + 2 NA Intergenic Intergenic 210368 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 223-174 chr2 205297559 205297733 + 2 NA intron (NM_057177, intron 16 of 21) intron (NM_057177, intron 16 of 21) -384854 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 510-267 chr7 110298290 110298619 + 2 NA Intergenic Intergenic -338241 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 310-259 chr2 124222191 124222435 + 2 NA intron (NM_130773, intron 2 of 23) intron (NM_130773, intron 2 of 23) 197026 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 278-348 chr5 118700323 118700557 + 2 NA Intergenic Intergenic 104252 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 155-82 chr5 125107493 125107604 + 2 NA intron (NR_109882, intron 2 of 5) MIR3|SINE|MIR 70717 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 291-176 chr17 62399130 62399304 + 2 NA intron (NM_001144933, intron 8 of 11) AluJb|SINE|Alu 18664 NM_173503 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 289-152 chr15 76319268 76319491 + 2 NA Intergenic AluJr4|SINE|Alu -7910 NM_000126 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein subunit alpha protein-coding 217-13 chr1 108554377 108554539 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -5642 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 385-357 chr7 54354972 54355308 + 2 NA Intergenic Intergenic 24443 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 259-46 chr10 55438314 55438508 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -160631 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 573-206 chr9 6278272 6278816 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 30073 NM_001353802 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 290-98 chr12 13969382 13969580 + 2 NA intron (NM_000834, intron 1 of 12) MIRb|SINE|MIR 10875 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 140 chr1 68658143 68658256 + 2 NA Intergenic L1MC4|LINE|L1 -161117 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 382-122 chr15 69568372 69568741 + 2 NA intron (NR_026979, intron 4 of 4) L4_C_Mam|LINE|RTE-X 6836 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 192 chr1 24315227 24315330 + 2 NA Intergenic Intergenic -4079 NM_198174 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 627-11 chr10 91980877 91981366 + 2 NA intron (NM_003972, intron 15 of 37) intron (NM_003972, intron 15 of 37) 57351 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 326-143 chr14 26353298 26353515 + 2 NA Intergenic L1P4|LINE|L1 200024 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 203-230 chr8 87220005 87220130 + 2 NA intron (NM_173538, intron 5 of 10) intron (NM_173538, intron 5 of 10) 353652 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 493-223 chr4 33226039 33226394 + 2 NA Intergenic L1PA17|LINE|L1 813677 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 357-3 chr1 34344715 34344942 + 2 NA Intergenic Intergenic 167921 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 692-8 chr10 10031283 10031733 + 2 NA Intergenic L1ME3F|LINE|L1 -27214 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 378-91 chr11 111503689 111503924 + 2 NA intron (NM_001367974, intron 1 of 4) intron (NM_001367974, intron 1 of 4) -6796 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 214-28 chr1 221361228 221361418 + 2 NA Intergenic Intergenic -25027 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 122-35 chr3 106647209 106647313 + 2 NA Intergenic (TACA)n|Simple_repeat|Simple_repeat 593377 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 467-165 chr22 40596234 40596610 + 2 NA intron (NM_020831, intron 1 of 14) intron (NM_020831, intron 1 of 14) 40297 NM_020831 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 327-134 chr12 131689618 131689831 + 2 NA Intergenic Intergenic -21366 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 231-165 chr2 79653915 79654043 + 2 NA intron (NM_001282598, intron 2 of 17) MLT1D-int|LTR|ERVL-MaLR -4620 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 604-65 chr18 4384203 4384644 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 70843 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 301-217 chr2 109105433 109105712 + 2 NA Intergenic AluSx3|SINE|Alu -23633 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 325-458 chr5 110812997 110813172 + 2 NA Intergenic L1MD2|LINE|L1 74077 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 605-76 chr3 84343229 84343645 + 2 NA Intergenic Intergenic 526138 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 236-66 chr11 29427660 29427798 + 2 NA Intergenic Intergenic -166684 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 528-127 chr2 67618442 67618965 + 2 NA Intergenic L2a|LINE|L2 206859 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 416-8 chr1 76931361 76931623 + 2 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 64012 NM_030965 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 285-400 chr8 34913897 34914119 + 2 NA Intergenic Intergenic 130087 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 238-340 chr6 150446317 150446501 + 2 NA Intergenic L2|LINE|L2 77397 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 517-303 chrX 134221936 134222356 + 2 NA Intergenic L1MD1|LINE|L1 -15067 NM_001101357 347475 Hs.679431 NM_001101357 ENSG00000203952 CCDC160 - coiled-coil domain containing 160 protein-coding 160-37 chr2 14091320 14091451 + 2 NA Intergenic L1M3|LINE|L1 309573 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 186-172 chr9 76882029 76882182 + 2 NA intron (NM_001308048, intron 1 of 17) intron (NM_001308048, intron 1 of 17) 23982 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 530-32 chr10 95592669 95593043 + 2 NA Intergenic L1MEg2|LINE|L1 -31485 NM_024991 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 288-28 chr1 183639209 183639493 + 2 NA intron (NM_001297670, intron 1 of 17) intron (NM_001297670, intron 1 of 17) 3242 NM_015149 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 494-12 chr1 118452709 118453108 + 2 NA Intergenic L1PB1|LINE|L1 -267680 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 294-138 chr15 58296525 58296760 + 2 NA Intergenic L1ME3D|LINE|L1 -135349 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 392-49 chr12 2516628 2516868 + 2 NA intron (NM_199460, intron 9 of 49).2 L2a|LINE|L2 155472 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 239-77 chr12 65760757 65760959 + 2 NA intron (NR_026825, intron 1 of 1) L2c|LINE|L2 -63602 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 229-316 chr5 122262313 122262444 + 2 NA Intergenic Intergenic -49313 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 271-311 chr4 69565759 69565991 + 2 NA Intergenic Intergenic -39861 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 235-198 chr20 12232976 12233145 + 2 NA Intergenic Intergenic 315167 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 201-219 chr6 68723139 68723249 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 87912 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 733-14 chr12 37884235 37884680 + 2 NA Intergenic ALR/Alpha|Satellite|centr -432317 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 174-44 chr14 65695548 65695688 + 2 NA intron (NR_038167, intron 7 of 8) L1MC2|LINE|L1 224516 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 168-95 chr6 68969079 68969189 + 2 NA intron (NM_001704, intron 8 of 31) intron (NM_001704, intron 8 of 31) 333852 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 271-339 chr5 31409729 31409965 + 2 NA intron (NM_013235, intron 30 of 34) intron (NM_013235, intron 30 of 34) 122246 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 593-98 chr3 25336141 25336523 + 2 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -4470 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 239-125 chr16 59087359 59087541 + 2 NA Intergenic L2a|LINE|L2 -353134 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 337-471 chr5 169398596 169398817 + 2 NA Intergenic L1ME3B|LINE|L1 -97567 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 240-60 chr10 81410334 81410520 + 2 NA Intergenic Intergenic -464767 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 533-138 chr3 106477450 106477919 + 2 NA Intergenic L1MA9|LINE|L1 -608283 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 309-245 chr2 49837952 49838147 + 2 NA Intergenic Intergenic 136154 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 249-184 chr2 19392109 19392268 + 2 NA Intergenic Intergenic -33565 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 254-305 chr5 37617818 37618033 + 2 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 216897 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 318-68 chr10 65279326 65279488 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -292018 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 276-260 chr20 15144712 15144976 + 2 NA intron (NM_001351663, intron 5 of 17) Charlie25|DNA|hAT-Charlie -51996 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 338-586 chr9 35908047 35908336 + 2 NA Intergenic (CCATGC)n|Simple_repeat|Simple_repeat -1299 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 219-150 chr19 16955578 16955706 + 2 NA intron (NM_015692, intron 19 of 41) L1MB3|LINE|L1 -58695 NR_147452 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 280-107 chr13 48760610 48760763 + 2 NA Intergenic MLT1M|LTR|ERVL-MaLR 106757 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 441-169 chr3 184984852 184985085 + 2 NA intron (NM_001009921, intron 41 of 46) intron (NM_001009921, intron 41 of 46) 168092 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 273-287 chr3 31602555 31602795 + 2 NA intron (NM_178862, intron 5 of 15) (T)n|Simple_repeat|Simple_repeat 69750 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 296-253 chr2 200160959 200161137 + 2 NA Intergenic MER50|LTR|ERV1 -144831 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 233-209 chr21 18957545 18957674 + 2 NA Intergenic L1MA5|LINE|L1 -197797 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 646-131 chr8 122116638 122117094 + 2 NA Intergenic L1PB4|LINE|L1 451778 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 333-385 chr4 41279315 41279622 + 2 NA Intergenic Intergenic 22540 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 289-77 chr11 27813654 27813876 + 2 NA Intergenic Intergenic -91735 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 422-111 chr17 11512708 11512985 + 2 NA intron (NM_001173462, intron 3 of 4) L1ME4a|LINE|L1 -85624 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 348-262 chr20 19572724 19572940 + 2 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -288236 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 425-84 chr14 61654120 61654452 + 2 NA non-coding (NR_039985, exon 3 of 3) non-coding (NR_039985, exon 3 of 3) -41227 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 927-30 chrX 91258688 91259234 + 2 NA Intergenic Intergenic -175878 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 494-22 chr10 49427290 49427746 + 2 NA Intergenic L1MD|LINE|L1 -31429 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 204-38 chr11 23532283 23532433 + 2 NA Intergenic L1M4c|LINE|L1 -113168 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 351 chr1 31722013 31722208 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -18093 NM_001856 1307 Hs.368921 NM_001856 ENSG00000084636 COL16A1 447AA|FP1572 collagen type XVI alpha 1 chain protein-coding 360-235 chr2 133726952 133727211 + 2 NA Intergenic Intergenic -158618 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 461-301 chrX 121013378 121013711 + 2 NA Intergenic L1MA3|LINE|L1 -27760 NM_001080138 728042 Hs.729566 NM_001080138 ENSG00000226600 CT47A9 CT47.9 cancer/testis antigen family 47 member A9 protein-coding 333-353 chr3 76286405 76286635 + 2 NA Intergenic Intergenic -500971 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 283-269 chr20 58538099 58538273 + 2 NA intron (NR_034147, intron 5 of 6) intron (NR_034147, intron 5 of 6) -22787 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 203-68 chr14 86092191 86092363 + 2 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 157599 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 268-253 chr3 146568352 146568599 + 2 NA Intergenic Intergenic -23868 NM_021105 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 479-4 chr1 63345990 63346326 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -19174 NR_106716 102464823 NR_106716 ENSG00000275836 MIR6068 hsa-mir-6068 microRNA 6068 ncRNA 236-168 chr2 67958740 67958944 + 2 NA Intergenic MER70B|LTR|ERVL 104162 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 260-297 chr3 188024092 188024304 + 2 NA Intergenic Intergenic -47791 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 246-116 chr14 54167161 54167373 + 2 NA Intergenic Intergenic -210376 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 431-140 chr2 113011268 113011617 + 2 NA Intergenic L1M3|LINE|L1 5983 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 232-376 chr8 91853317 91853490 + 2 NA Intergenic Intergenic 164277 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 436-139 chr2 118925387 118925796 + 2 NA Intergenic Intergenic -16578 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 216-17 chr1 111853760 111853870 + 2 NA TTS (NR_046783) TTS (NR_046783) 3090 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 478-120 chr18 862830 863089 + 2 NA Intergenic Intergenic -41912 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 161-19 chr11 106639576 106639690 + 2 NA Intergenic MER57A-int|LTR|ERV1 378843 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 311-158 chr15 57134355 57134581 + 2 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -84962 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 354-76 chr11 27980587 27980857 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -76093 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 288-484 chrX 154978527 154978774 + 2 NA intron (NM_000132, intron 6 of 25) L1MA6|LINE|L1 44073 NM_000132 2157 Hs.632836 NM_000132 ENSG00000185010 F8 AHF|DXS1253E|F8B|F8C|FVIII|HEMA coagulation factor VIII protein-coding 560-118 chr3 155072799 155073202 + 2 NA intron (NM_001354642, intron 1 of 22) LTR37A|LTR|ERV1 -6672 NM_000902 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 512-40 chr10 66614057 66614464 + 2 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -311776 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 457-244 chr7 106721960 106722338 + 2 NA Intergenic Intergenic -60991 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 412-38 chr10 103954054 103954374 + 2 NA Intergenic L1ME1|LINE|L1 -12926 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 662-73 chr5 46256450 46256914 + 2 NA Intergenic ALR/Alpha|Satellite|centr -560302 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 341-164 chr15 47534653 47534837 + 2 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -182760 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 413-91 chr14 89279976 89280245 + 2 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 137123 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 523-13 chr1 177223482 177223749 + 2 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 52657 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 594-48 chr15 59926220 59926680 + 2 NA Intergenic L1MD3|LINE|L1 -77861 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 330-545 chr9 17250043 17250309 + 2 NA intron (NM_001365029, intron 5 of 25) L1M4|LINE|L1 115136 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 346-77 chr11 87632720 87632998 + 2 NA Intergenic L2a|LINE|L2 86552 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 258-312 chr5 18753711 18753929 + 2 NA Intergenic Intergenic 946546 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 685-50 chr2 136537876 136538418 + 2 NA Intergenic Intergenic -227398 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 340-579 chrX 35300760 35300951 + 2 NA Intergenic L1M1|LINE|L1 358059 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 308-522 chr8 134753496 134753719 + 2 NA Intergenic L1ME4c|LINE|L1 -40576 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 285-93 chr12 75849578 75849825 + 2 NA Intergenic Intergenic 182075 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 483-237 chr7 29579407 29579778 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 14059 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 415-6 chr1 71222261 71222562 + 2 NA intron (NR_046217, intron 2 of 3) intron (NR_046217, intron 2 of 3) 141087 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 293-249 chr3 2342198 2342411 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 103475 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 318-355 chr3 71161778 71162041 + 2 NA intron (NR_146142, intron 6 of 19) intron (NR_146142, intron 6 of 19) -29712 NM_001349342 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 281-234 chr2 151385971 151386158 + 2 NA Intergenic Intergenic -6693 NR_110248 101929319 Hs.639241 NR_110248 LOC101929319 - uncharacterized LOC101929319 ncRNA 345-507 chr8 4860752 4860949 + 2 NA intron (NM_033225, intron 1 of 69) L2c|LINE|L2 134064 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 333-161 chr15 36176660 36176880 + 2 NA Intergenic Intergenic 249914 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 298-365 chr5 63833173 63833347 + 2 NA Intergenic Intergenic 129032 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 504-80 chr15 70599927 70600375 + 2 NA Intergenic L1MC1|LINE|L1 -13545 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 134-55 chr3 33497942 33498041 + 2 NA 3' UTR (NM_001207044, exon 33 of 33) 3' UTR (NM_001207044, exon 33 of 33) -57586 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 309-226 chr19 33673566 33673869 + 2 NA intron (NM_001127895, intron 2 of 4) intron (NM_001127895, intron 2 of 4) -10811 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 216-280 chr5 91018597 91018739 + 2 NA intron (NR_003149, intron 85 of 89) intron (NR_003149, intron 85 of 89) 295734 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 181-108 chr4 61527202 61527335 + 2 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 325096 NM_001371342 263-139 chr16 63843756 63843965 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 1278203 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 562-112 chr2 117629978 117630507 + 2 NA Intergenic Intergenic -184449 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 279-428 chr8 135190173 135190439 + 2 NA Intergenic Intergenic -43825 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 273-142 chr14 87682607 87682854 + 2 NA Intergenic L1MC4|LINE|L1 -27436 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 352-546 chr8 136134229 136134414 + 2 NA Intergenic Intergenic -396477 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 751-5 chr10 52695884 52696450 + 2 NA intron (NR_155748, intron 1 of 2) AluSz|SINE|Alu 59237 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 310-147 chr14 98273832 98274134 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -295859 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 356-247 chr2 79269517 79269808 + 2 NA Intergenic L2b|LINE|L2 -109909 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 367-385 chr6 21225098 21225333 + 2 NA intron (NM_017774, intron 15 of 15) intron (NM_017774, intron 15 of 15) 286677 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 213-57 chr11 79916613 79916778 + 2 NA Intergenic Intergenic -475665 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 247-196 chr2 69052784 69052982 + 2 NA intron (NM_032208, intron 3 of 17) L1M6|LINE|L1 39739 NM_018153 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 451-81 chr15 39202063 39202375 + 2 NA Intergenic L1PA16|LINE|L1 -48450 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 574-25 chr12 10204027 10204543 + 2 NA Intergenic Intergenic -8592 NM_001363598 23710 Hs.524250 NM_031412 ENSG00000139112 GABARAPL1 APG8-LIKE|APG8L|ATG8|ATG8B|ATG8L|GEC1 GABA type A receptor associated protein like 1 protein-coding 258-193 chr2 100801797 100801961 + 2 NA Intergenic Intergenic -18260 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 295-163 chr16 13945085 13945364 + 2 NA intron (NM_005236, intron 10 of 10) intron (NM_005236, intron 10 of 10) 25067 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 524-210 chr5 150935164 150935605 + 2 NA intron (NR_026867, intron 4 of 4) L1MB8|LINE|L1 11200 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 311-377 chr4 63574313 63574609 + 2 NA Intergenic MER52-int|LTR|ERV1 834989 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 309-185 chr16 5480876 5481128 + 2 NA Intergenic Intergenic 135248 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 230-93 chr12 125936844 125937044 + 2 NA Intergenic L1ME4a|LINE|L1 46430 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 299-501 chrX 97531315 97531605 + 2 NA intron (NR_125391, intron 2 of 2) intron (NR_125391, intron 2 of 2) 33075 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 346-379 chr5 13106434 13106717 + 2 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -73689 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 324-184 chr15 67910827 67911101 + 2 NA Intergenic Intergenic -70919 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 409-115 chr18 1235492 1235789 + 2 NA Intergenic L1MB7|LINE|L1 123989 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 222-354 chr7 132523933 132524125 + 2 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) 52441 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 277-137 chr16 51486296 51486477 + 2 NA Intergenic Intergenic -276133 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 384-413 chrX 100806813 100807065 + 2 NA Intergenic L1PB1|LINE|L1 -13420 NM_001325 1478 Hs.132370 NM_001325 ENSG00000101811 CSTF2 CstF-64 cleavage stimulation factor subunit 2 protein-coding 310-168 chr16 35359786 35360060 + 2 NA Intergenic L1M1|LINE|L1 -3493 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 342-363 chr4 75437260 75437595 + 2 NA Intergenic L1PB1|LINE|L1 71869 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 538-30 chr10 91444090 91444453 + 2 NA intron (NM_182765, intron 2 of 20) intron (NM_182765, intron 2 of 20) 33986 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 242-137 chr17 12381273 12381423 + 2 NA Intergenic MER4D1|LTR|ERV1 -168620 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 154-52 chr2 184200342 184200462 + 2 NA Intergenic Intergenic -178573 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 367-437 chr8 21156330 21156668 + 2 NA Intergenic L1PB1|LINE|L1 -141740 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 202-277 chrX 25646527 25646722 + 2 NA Intergenic L1MA4|LINE|L1 -491719 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 355-541 chrX 57232524 57232753 + 2 NA Intergenic Intergenic -54039 NM_001353840 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 191-99 chr2 82467669 82467833 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -389052 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 383-241 chr3 26352262 26352580 + 2 NA Intergenic Intergenic -270385 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 211-70 chr13 33011777 33011950 + 2 NA Intergenic AluJb|SINE|Alu -4560 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 293-322 chr4 176821606 176821887 + 2 NA Intergenic Intergenic -28824 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 330-490 chr7 45307357 45307537 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 149656 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 240-266 chr21 31630661 31630864 + 2 NA Intergenic L1ME5|LINE|L1 -28860 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 117-33 chr5 58416852 58416929 + 2 NA Intergenic L2b|LINE|L2 43196 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 558-58 chr15 53033398 53033930 + 2 NA Intergenic MIR3|SINE|MIR -82701 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 238-330 chr6 101059642 101059836 + 2 NA Intergenic Intergenic -178367 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 538-64 chr14 20274334 20274742 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 31413 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 408-327 chr7 148111036 148111354 + 2 NA intron (NM_014141, intron 14 of 22) HAL1|LINE|L1 439516 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 334-12 chr1 68599946 68600157 + 2 NA Intergenic Intergenic -102969 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 474-250 chr6 11315629 11316028 + 2 NA intron (NR_073131, intron 1 of 9) intron (NR_073131, intron 1 of 9) 66520 NR_073131 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 465-24 chr10 34561338 34561688 + 2 NA intron (NM_001184789, intron 2 of 22) AluSp|SINE|Alu 253783 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 479-189 chr5 38000250 38000602 + 2 NA Intergenic MIRc|SINE|MIR -25271 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 374-14 chr1 164407657 164407894 + 2 NA Intergenic L1MB3|LINE|L1 -151585 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 334-511 chr7 136978188 136978416 + 2 NA intron (NM_001006626, intron 3 of 4) intron (NM_001006626, intron 3 of 4) 75135 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 438-175 chr3 110425327 110425626 + 2 NA Intergenic Intergenic 644483 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 249-61 chr10 109003225 109003399 + 2 NA Intergenic Intergenic 919934 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 510-246 chr6 53606278 53606603 + 2 NA Intergenic L1PB1|LINE|L1 -21940 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 216-89 chr14 24541831 24541992 + 2 NA Intergenic L1PA15|LINE|L1 -33646 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 315-215 chr19 53052139 53052353 + 2 NA TTS (NM_001191055) TTS (NM_001191055) 7506 NM_001191055 100271846 Hs.420445 NM_001191055 ENSG00000268964 ERVV-2 ENVV2|HERV-V2 endogenous retrovirus group V member 2, envelope protein-coding 347-253 chr2 210874757 210875031 + 2 NA Intergenic Intergenic 257323 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 258-288 chr4 58128212 58128442 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 408001 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 305-103 chr11 95931300 95931518 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -7202 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 558-21 chr10 56417646 56418044 + 2 NA Intergenic Intergenic -56572 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 171-101 chr5 23511921 23512010 + 2 NA intron (NM_020227, intron 4 of 10) L1ME3Cz|LINE|L1 4310 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 263-230 chr20 39687275 39687512 + 2 NA Intergenic L1MD1|LINE|L1 -317068 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 365-200 chr2 114795136 114795320 + 2 NA intron (NM_001321910, intron 2 of 26) AluSq2|SINE|Alu 38320 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 208-233 chr6 60670484 60670655 + 2 NA Intergenic L1M4|LINE|L1 -903561 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 233-61 chr11 79019538 79019736 + 2 NA intron (NM_001098816, intron 6 of 33) L2b|LINE|L2 382472 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 342-322 chr3 94242444 94242713 + 2 NA Intergenic Intergenic 179517 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 534-199 chr5 51245413 51245759 + 2 NA Intergenic Intergenic 137746 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 216-34 chr10 49025330 49025519 + 2 NA intron (NM_001031746, intron 7 of 7) intron (NM_001031746, intron 7 of 7) -39837 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 178-33 chr12 28293006 28293154 + 2 NA intron (NM_001352082, intron 4 of 13) intron (NM_001352082, intron 4 of 13) -102342 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 263-456 chrX 62734570 62734725 + 2 NA Intergenic ALR/Alpha|Satellite|centr 616685 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 134 chr1 55398681 55398761 + 2 NA Intergenic L2a|LINE|L2 173080 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 361-184 chr18 38331006 38331320 + 2 NA Intergenic L2|LINE|L2 674028 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 194-216 chr8 131754335 131754495 + 2 NA Intergenic Intergenic -149678 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 255-407 chr8 14525974 14526175 + 2 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 327436 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 299-71 chr10 130515380 130515640 + 2 NA Intergenic Intergenic 379101 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 294-111 chr14 43083802 43084061 + 2 NA Intergenic MIRb|SINE|MIR 1423352 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 376-330 chr5 118878023 118878265 + 2 NA intron (NM_001308081, intron 4 of 5) L1PA13|LINE|L1 -96442 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 595-116 chr4 16241242 16241710 + 2 NA intron (NR_027697, intron 2 of 2) intron (NR_027697, intron 2 of 2) 14813 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 348-427 chr5 126412036 126412251 + 2 NA intron (NM_001146319, intron 1 of 13) L1P4|LINE|L1 -11003 NM_001146320 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 315-148 chr15 54344576 54344750 + 2 NA intron (NM_001329919, intron 16 of 31) intron (NM_001329919, intron 16 of 31) 332015 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 318-329 chr21 25335823 25336003 + 2 NA Intergenic LTR33|LTR|ERVL 95788 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 320-123 chr12 83407931 83408128 + 2 NA Intergenic Intergenic 720874 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 863-50 chr8 114033217 114033901 + 2 NA Intergenic Intergenic -596620 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 318-174 chr14 72114829 72115020 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 181397 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 380-428 chrX 94564361 94564628 + 2 NA Intergenic L1M1|LINE|L1 498732 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 336-188 chr16 7794953 7795249 + 2 NA Intergenic MIRb|SINE|MIR 462256 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 281-83 chr12 25704279 25704482 + 2 NA Intergenic L2|LINE|L2 -55802 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 346-351 chr4 62089228 62089407 + 2 NA intron (NR_110595, intron 6 of 7) L1PA7|LINE|L1 72448 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 350-464 chr7 3804307 3804520 + 2 NA intron (NM_152744, intron 4 of 44) L1MD2|LINE|L1 -325272 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 335-433 chr5 115439366 115439614 + 2 NA Intergenic L1M2|LINE|L1 105285 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 270-81 chr12 37980351 37980595 + 2 NA Intergenic ALR/Alpha|Satellite|centr -336301 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 332-570 chr9 84060911 84061174 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -2401 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 252-202 chr2 102182451 102182649 + 2 NA Intergenic Intergenic -4423 NM_001351447 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 410-347 chrX 135360409 135360784 + 2 NA exon (NM_152695, exon 5 of 5) exon (NM_152695, exon 5 of 5) 15800 NM_152695 203523 Hs.28780 NM_152695 ENSG00000173275 ZNF449 ZSCAN19 zinc finger protein 449 protein-coding 639-70 chr20 8652099 8652708 + 2 NA intron (NM_182734, intron 7 of 32) intron (NM_182734, intron 7 of 32) -178782 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 355-395 chr5 40019065 40019387 + 2 NA Intergenic L1M5|LINE|L1 -33065 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 289-237 chr2 114149901 114150124 + 2 NA Intergenic Intergenic -170028 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 341-518 chr8 60286488 60286717 + 2 NA Intergenic Intergenic -5202 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 234-141 chr18 5556350 5556502 + 2 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) -12087 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 634-57 chr14 70442411 70442769 + 2 NA Intergenic HERV3-int|LTR|ERV1 -9584 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 306-488 chr7 138544088 138544315 + 2 NA intron (NM_003852, intron 7 of 18) L1MA9|LINE|L1 83942 NM_015905 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 153-103 chr9 80861355 80861450 + 2 NA Intergenic L1MEf|LINE|L1 828133 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 222-62 chr11 38531623 38531811 + 2 NA Intergenic L1MA9|LINE|L1 114639 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 409-179 chr21 16513439 16513700 + 2 NA intron (NR_136546, intron 2 of 2) MIR|SINE|MIR -22003 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 220-14 chr1 107405094 107405253 + 2 NA intron (NM_001113226, intron 3 of 6) intron (NM_001113226, intron 3 of 6) 257104 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 222-122 chr15 70233118 70233318 + 2 NA Intergenic HAL1ME|LINE|L1 -135301 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 235-93 chr13 85452297 85452493 + 2 NA intron (NR_046989, intron 1 of 3) LTR34|LTR|ERV1 88792 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 228-150 chr2 11705060 11705234 + 2 NA intron (NM_001349207, intron 1 of 20) intron (NM_001349207, intron 1 of 20) -19168 NM_001261427 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 555-211 chr8 137218847 137219304 + 2 NA Intergenic Intergenic 194513 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 208-192 chr4 96614550 96614697 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 303920 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 457-214 chr6 2721917 2722291 + 2 NA intron (NM_001012418, intron 2 of 12) HAL1|LINE|L1 28818 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 272-422 chr7 62802314 62802543 + 2 NA Intergenic ALR/Alpha|Satellite|centr 501628 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 343-471 chr6 73315487 73315821 + 2 NA Intergenic Intergenic -5289 NR_027005 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 292-147 chr15 24618044 24618243 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -57251 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 397-140 chr2 14925504 14925842 + 2 NA Intergenic Intergenic 292956 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 346-482 chr8 72693018 72693198 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -38937 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 320-308 chr20 39619488 39619698 + 2 NA Intergenic L1ME1|LINE|L1 -384868 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 274-424 chrX 110278106 110278253 + 2 NA intron (NM_001171689, intron 3 of 7) intron (NM_001171689, intron 3 of 7) 39906 NM_001025580 9949 Hs.656243 NM_015365 ENSG00000101935 AMMECR1 AMMERC1|MFHIEN Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1 protein-coding 370-297 chr22 30520102 30520329 + 2 NA Intergenic Intergenic -14520 NM_001161368 284904 Hs.517541 NM_174977 ENSG00000133488 SEC14L4 TAP3 SEC14 like lipid binding 4 protein-coding 317-529 chr9 83553808 83554000 + 2 NA Intergenic L1PA14|LINE|L1 -15503 NM_174938 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 265-348 chr6 156614616 156614809 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -163143 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 406-306 chr8 138305890 138306269 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 191182 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 281-241 chr2 198129581 198129815 + 2 NA intron (NM_006226, intron 5 of 5) intron (NM_006226, intron 5 of 5) 245399 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 603-40 chr13 43184864 43185203 + 2 NA Intergenic L1MB7|LINE|L1 71868 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 340-262 chr2 79508309 79508498 + 2 NA Intergenic Intergenic -4531 NM_001164883 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 320-556 chr8 99657961 99658163 + 2 NA intron (NM_017890, intron 34 of 61) L1ME3G|LINE|L1 -121201 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 248-201 chr2 120399715 120399880 + 2 NA Intergenic L2a|LINE|L2 53661 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin subunit beta B protein-coding 549-134 chr22 33901620 33902003 + 2 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 18617 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 247-248 chr22 35252117 35252347 + 2 NA Intergenic AluSx|SINE|Alu -5261 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 365-34 chr1 246276983 246277292 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 140275 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 328-548 chr7 125759760 125759969 + 2 NA Intergenic Intergenic -495573 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 515 chr1 8267458 8267919 + 2 NA Intergenic Intergenic -50397 NM_001080397 50651 Hs.463036 NM_001080397 ENSG00000162426 SLC45A1 DNB5|IDDNPF solute carrier family 45 member 1 protein-coding 201-260 chr9 85123373 85123475 + 2 NA Intergenic L1ME3A|LINE|L1 417523 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 138-13 chr11 79702245 79702350 + 2 NA Intergenic L1PREC2|LINE|L1 -261267 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 312-274 chr2 216908939 216909242 + 2 NA Intergenic Intergenic 38318 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 334-114 chr12 94163524 94163806 + 2 NA intron (NM_005761, intron 1 of 30) intron (NM_005761, intron 1 of 30) 15088 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 376-366 chr7 31449406 31449746 + 2 NA Intergenic Intergenic -64495 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 243-479 chr9 96735963 96736163 + 2 NA Intergenic L1MB3|LINE|L1 10242 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 244-191 chr2 237015685 237015867 + 2 NA Intergenic Intergenic 40391 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 438-56 chr11 84215071 84215427 + 2 NA intron (NM_001142700, intron 1 of 19) intron (NM_001142700, intron 1 of 19) 58031 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 373-405 chr8 75428248 75428476 + 2 NA intron (NM_001330561, intron 1 of 11) L1ME3E|LINE|L1 20713 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 567-40 chr11 133759236 133759751 + 2 NA Intergenic L1MCa|LINE|L1 50883 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 296-10 chr1 100756703 100756963 + 2 NA Intergenic L2c|LINE|L2 37091 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 419-143 chr2 79496639 79496906 + 2 NA intron (NR_110289, intron 4 of 4) HAL1b|LINE|L1 4072 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 388-208 chr22 29082261 29082565 + 2 NA intron (NM_001039570, intron 1 of 8) intron (NM_001039570, intron 1 of 8) 9378 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 218-183 chr2 220312894 220313075 + 2 NA Intergenic Intergenic -406419 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 353-373 chr4 59257161 59257495 + 2 NA Intergenic Intergenic 243755 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 318-573 chr9 70612055 70612290 + 2 NA intron (NM_001366143, intron 17 of 25) intron (NM_001366143, intron 17 of 25) -197515 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 225-186 chr21 20002541 20002736 + 2 NA Intergenic AluJr4|SINE|Alu -102883 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 625-46 chr2 50680220 50680676 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 15814 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 258-118 chr14 43270455 43270669 + 2 NA Intergenic Intergenic 1236721 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 391-188 chr2 163064425 163064658 + 2 NA Intergenic Intergenic -225774 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 565-135 chr4 144844270 144844677 + 2 NA Intergenic L1ME3A|LINE|L1 198317 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 255-50 chr11 13886524 13886724 + 2 NA Intergenic L1ME3A|LINE|L1 -16008 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 573-192 chr8 58948844 58949306 + 2 NA intron (NM_014729, intron 2 of 8) MIR|SINE|MIR 170072 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 176-47 chr18 1190048 1190156 + 2 NA Intergenic Intergenic 169527 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 814-2 chr1 178962362 178962920 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -63163 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 260-331 chr5 971310 971486 + 2 NA Intergenic L1MEg|LINE|L1 25942 NR_104614 100506688 Hs.532063 NM_001242737 ENSG00000215246 LOC100506688 - uncharacterized LOC100506688 ncRNA 140-43 chr2 215164581 215164666 + 2 NA Intergenic L1PB1|LINE|L1 -25997 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 341-344 chr3 126722121 126722320 + 2 NA intron (NM_032343, intron 1 of 7) AluJr4|SINE|Alu 17980 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 290-148 chr15 96001547 96001786 + 2 NA Intergenic MIR|SINE|MIR 126175 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 732-88 chr7 78750657 78751182 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -258069 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 363-466 chr9 11446255 11446568 + 2 NA Intergenic Intergenic 833205 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 234-126 chr16 81349067 81349230 + 2 NA intron (NM_022041, intron 1 of 10) HAL1|LINE|L1 34182 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 500-51 chr11 56539004 56539390 + 2 NA Intergenic L2a|LINE|L2 4060 NM_001005245 219487 Hs.553632 NM_001005245 ENSG00000255223 OR5M11 OR11-199 olfactory receptor family 5 subfamily M member 11 protein-coding 269-383 chr7 53819656 53819894 + 2 NA Intergenic Intergenic -7844 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 156-22 chr11 44385253 44385362 + 2 NA Intergenic L2b|LINE|L2 -75168 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 187-23 chr10 64313116 64313256 + 2 NA Intergenic Intergenic -512342 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 637-2 chr1 80190530 80191126 + 2 NA Intergenic Intergenic -344927 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 324-100 chr11 90718189 90718450 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 150883 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 343 chr1 7503937 7504147 + 2 NA intron (NM_001349608, intron 5 of 21) intron (NM_001349608, intron 5 of 21) -114288 NR_146199 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 255-82 chr12 112171228 112171424 + 2 NA intron (NM_001109662, intron 67 of 75) intron (NM_001109662, intron 67 of 75) -8005 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 187-161 chr7 61885791 61885915 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1418203 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 507-95 chr15 86801042 86801401 + 2 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -131659 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 319-553 chr8 131114426 131114612 + 2 NA Intergenic L1MA1|LINE|L1 -73610 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 301-441 chr8 55205559 55205712 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 103607 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 351-96 chr12 95884725 95885007 + 2 NA intron (NM_182496, intron 10 of 15) MLT1C|LTR|ERVL-MaLR 25914 NM_003095 6636 Hs.105465 NM_003095 ENSG00000139343 SNRPF SMF|Sm-F|snRNP-F small nuclear ribonucleoprotein polypeptide F protein-coding 426-301 chr8 109875569 109875949 + 2 NA Intergenic Intergenic 100012 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 334-580 chr9 136774251 136774494 + 2 NA Intergenic Intergenic -9854 NM_203347 389812 Hs.413902 NM_203347 ENSG00000177984 LCN15 PRO6093|UNQ2541 lipocalin 15 protein-coding 397-352 chr9 13723082 13723368 + 2 NA Intergenic L1M5|LINE|L1 -204746 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 246-396 chr8 76884591 76884797 + 2 NA Intergenic Intergenic 82156 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 333-605 chr9 85316194 85316491 + 2 NA Intergenic L1ME2|LINE|L1 425687 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 330-279 chr2 107284360 107284652 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 65019 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 476-114 chr17 73083101 73083421 + 2 NA intron (NM_001352692, intron 3 of 9) Charlie2a|DNA|hAT-Charlie 9427 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 335-420 chr5 31864255 31864450 + 2 NA intron (NM_178140, intron 2 of 24) LTR33|LTR|ERVL 71807 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 355-244 chr2 101493601 101493778 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -18577 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 260-446 chr8 119300002 119300162 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -25089 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 547-45 chr12 7343967 7344429 + 2 NA Intergenic AluJr|SINE|Alu 39866 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 404-78 chr12 39072043 39072370 + 2 NA Intergenic Intergenic -166615 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 236-5 chr1 42860529 42860742 + 2 NA intron (NR_104171, intron 1 of 3) L1M4|LINE|L1 3013 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 211-72 chr13 48707825 48708026 + 2 NA 3' UTR (NM_001308476, exon 5 of 5) 3' UTR (NM_001308476, exon 5 of 5) 53996 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 273-331 chr4 91894561 91894777 + 2 NA Intergenic MLT2A1|LTR|ERVL 382633 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 382-382 chr7 52074730 52075071 + 2 NA Intergenic LTR33|LTR|ERVL -681644 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 192-196 chr7 96506678 96506831 + 2 NA intron (NR_163953, intron 2 of 5) intron (NR_163953, intron 2 of 5) -3231 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 349-465 chr6 150288798 150289016 + 2 NA Intergenic AluJo|SINE|Alu -80105 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 344-78 chr11 61560336 61560649 + 2 NA intron (NM_001370211, intron 1 of 7) intron (NM_001370211, intron 1 of 7) -17616 NM_001370210 9066 Hs.131188 NM_004200 ENSG00000011347 SYT7 IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII synaptotagmin 7 protein-coding 275-77 chr12 8142731 8142991 + 2 NA Intergenic L1MA9|LINE|L1 -8009 NR_036440 642559 Hs.646545 NR_036440 ENSG00000235602 POU5F1P3 OCT3|OCT4|OCT4-pg3|OTF-3|OTF3|OTF3L|Oct-3|Oct-4|POU5F1|POU5F1L|POU5FLC12 POU class 5 homeobox 1 pseudogene 3 pseudo 332-443 chr5 172514827 172515020 + 2 NA Intergenic L1MC1|LINE|L1 44091 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 236-149 chr18 12561638 12561836 + 2 NA intron (NM_020148, intron 2 of 15) MER46C|DNA|TcMar-Tigger 94995 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 136-85 chr8 61194555 61194626 + 2 NA Intergenic L1MEd|LINE|L1 -93380 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 169-23 chr12 3982193 3982354 + 2 NA Intergenic L1MEc|LINE|L1 -108825 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 447-277 chr8 118569994 118570294 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -50857 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 381-135 chr17 34078022 34078386 + 2 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 78602 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 187-84 chr2 136722816 136722974 + 2 NA Intergenic L1PA16|LINE|L1 -42650 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 699-51 chr2 105728804 105729223 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie -15899 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 253-244 chr3 3548697 3548900 + 2 NA Intergenic L1MC|LINE|L1 -250633 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 307-391 chr5 116225310 116225535 + 2 NA intron (NM_001308080, intron 5 of 6) L1M4a1|LINE|L1 -30321 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 476-46 chr11 38510764 38511065 + 2 NA Intergenic Intergenic 135442 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 550-78 chr14 82213700 82214071 + 2 NA Intergenic Intergenic -428747 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 294-194 chr2 12669892 12670077 + 2 NA Intergenic Intergenic -46888 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 345-286 chr2 140219850 140220187 + 2 NA Intergenic Intergenic 366667 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 150-113 chrX 101860612 101860712 + 2 NA Intergenic PABL_B-int|LTR|ERV1 -3085 NR_159739 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 558-144 chr3 166800719 166801094 + 2 NA Intergenic L1MC4a|LINE|L1 -97777 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 348-307 chr3 96830722 96830998 + 2 NA intron (NM_001080448, intron 1 of 17) L1MA8|LINE|L1 16266 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 164-92 chr4 170923472 170923622 + 2 NA Intergenic Intergenic -117055 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 366-116 chr13 31717549 31717892 + 2 NA Intergenic MER39|LTR|ERV1 -21806 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 458-240 chr7 94941628 94941983 + 2 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 31907 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 555-40 chr12 30487114 30487529 + 2 NA Intergenic Intergenic 189923 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 342-93 chr11 60261664 60261922 + 2 NA Intergenic Intergenic -18656 NM_001351235 643680 Hs.559934 NM_001351235 MS4A4E - membrane spanning 4-domains A4E protein-coding 393-160 chr2 52605488 52605751 + 2 NA Intergenic L1MA3|LINE|L1 96996 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 596-54 chr13 90134263 90134717 + 2 NA Intergenic Intergenic -14773 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 264-393 chr7 95935318 95935487 + 2 NA intron (NM_004411, intron 6 of 16) L1MB1|LINE|L1 162896 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 710-37 chr18 13421944 13422509 + 2 NA intron (NR_040031, intron 3 of 3) intron (NR_040031, intron 3 of 3) 5308 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 206-266 chr8 85306039 85306222 + 2 NA Intergenic Intergenic 35584 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 420-292 chr8 117189993 117190298 + 2 NA Intergenic L1MC5a|LINE|L1 55150 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 316-324 chr20 53278307 53278528 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 93134 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 298-80 chr11 95758404 95758577 + 2 NA Intergenic AluJb|SINE|Alu 31292 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 245-217 chr20 50543175 50543354 + 2 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 32881 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 544-164 chr4 81978517 81978912 + 2 NA Intergenic Intergenic 395277 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 632-37 chr16 25971233 25971682 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -53780 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 316-105 chr11 76638516 76638762 + 2 NA Intergenic Intergenic 31299 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 329-368 chr3 83673850 83674170 + 2 NA Intergenic Intergenic 1195565 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 467-302 chr9 135600322 135600770 + 2 NA Intergenic L1ME1|LINE|L1 25621 NR_034016 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 342-502 chr8 15487952 15488155 + 2 NA Intergenic MIR3|SINE|MIR -52034 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 226-345 chr8 89461769 89461931 + 2 NA Intergenic MIR|SINE|MIR 295861 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 114-58 chr7 101155770 101155882 + 2 NA intron (NM_001283, intron 1 of 4) intron (NM_001283, intron 1 of 4) 1350 NM_001283 1174 Hs.489365 NM_001283 ENSG00000106367 AP1S1 AP19|CLAPS1|EKV3|MEDNIK|SIGMA1A adaptor related protein complex 1 subunit sigma 1 protein-coding 280-223 chr2 201664259 201664477 + 2 NA intron (NM_033066, intron 13 of 21) A-rich|Low_complexity|Low_complexity -20865 NM_001044385 65062 Hs.12319 NM_152388 ENSG00000155755 TMEM237 ALS2CR4|JBTS14 transmembrane protein 237 protein-coding 228-125 chr16 73429197 73429333 + 2 NA Intergenic Intergenic 42460 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 399-42 chr10 91729802 91730156 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 68217 NR_108070 100507633 Hs.291528 NR_108070 ENSG00000228701 TNKS2-AS1 - TNKS2 antisense RNA 1 (head to head) ncRNA 419-4 chr1 45132179 45132500 + 2 NA intron (NM_020883, intron 1 of 13) MIR3|SINE|MIR 74266 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 205-245 chr6 119464933 119465098 + 2 NA intron (NR_046100, intron 3 of 5) intron (NR_046100, intron 3 of 5) 26287 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 162-58 chr2 80918637 80918737 + 2 NA Intergenic L1MA2|LINE|L1 548259 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 221-294 chr8 18628274 18628438 + 2 NA intron (NM_015310, intron 11 of 15) L1MEc|LINE|L1 180511 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 348-340 chr4 19324648 19324900 + 2 NA Intergenic L2a|LINE|L2 -927131 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 388-198 chr21 22459099 22459386 + 2 NA Intergenic Intergenic 360625 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 402-146 chr2 55840489 55840785 + 2 NA Intergenic L2b|LINE|L2 83145 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 240-38 chr10 32622432 32622599 + 2 NA intron (NM_001321115, intron 19 of 43) intron (NM_001321115, intron 19 of 43) 176375 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 556-91 chr19 9487784 9488168 + 2 NA intron (NM_152476, intron 2 of 9) MSTB2|LTR|ERVL-MaLR 10640 NM_152476 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 334-508 chr7 115326239 115326529 + 2 NA Intergenic Intergenic -95029 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 266-34 chr10 29952748 29952943 + 2 NA Intergenic AluSz|SINE|Alu 106741 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 342-529 chr8 122503556 122503854 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 64939 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 367-370 chr5 135154723 135155059 + 2 NA intron (NR_161235, intron 2 of 5) intron (NR_161235, intron 2 of 5) 93286 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 473-142 chr2 155294428 155294820 + 2 NA Intergenic L1ME3E|LINE|L1 595929 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 314-522 chr7 19353602 19353864 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -208312 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 239-93 chr13 109023490 109023654 + 2 NA intron (NM_015011, intron 23 of 34) (TA)n|Simple_repeat|Simple_repeat 143731 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 479-261 chr8 124194897 124195350 + 2 NA intron (NR_125420, intron 2 of 2) intron (NR_125420, intron 2 of 2) -23601 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 456-206 chr3 103900438 103900874 + 2 NA Intergenic Intergenic -376540 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 402-373 chrX 151640590 151640856 + 2 NA intron (NM_173493, intron 8 of 15) intron (NM_173493, intron 8 of 15) -54535 NM_024082 79057 Hs.209253 NM_024082 ENSG00000130032 PRRG3 PRGP3|TMG3 proline rich and Gla domain 3 protein-coding 531-105 chr2 40735804 40736313 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -223623 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 432-44 chr11 17654367 17654717 + 2 NA Intergenic MIRb|SINE|MIR 42397 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 238-103 chr14 69422254 69422430 + 2 NA intron (NM_001330185, intron 1 of 5) FRAM|SINE|Alu 23650 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 333-315 chr20 59337449 59337767 + 2 NA Intergenic AluYb8|SINE|Alu 36997 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 393-225 chr3 125362862 125363081 + 2 NA intron (NM_001348427, intron 1 of 9) intron (NM_001348427, intron 1 of 9) -5691 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 195-204 chr5 138540980 138541134 + 2 NA intron (NM_001291975, intron 2 of 11) intron (NM_001291975, intron 2 of 11) 654 NM_001282185 2107 Hs.483494 NM_004730 ENSG00000120705 ETF1 D5S1995|ERF|ERF1|RF1|SUP45L1|TB3-1 eukaryotic translation termination factor 1 protein-coding 697-6 chr10 44547821 44548297 + 2 NA Intergenic L1MD1|LINE|L1 -162962 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 389-249 chr3 164635681 164636012 + 2 NA Intergenic Intergenic 195634 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 600-90 chr4 38842567 38843015 + 2 NA intron (NM_006068, intron 1 of 1) MLT1A0|LTR|ERVL-MaLR 14026 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 225-97 chr14 92738084 92738228 + 2 NA intron (NM_005606, intron 1 of 13) intron (NM_005606, intron 1 of 13) 10471 NM_001008530 5641 Hs.18069 NM_005606 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 334-71 chr10 106072238 106072568 + 2 NA Intergenic MLT2F|LTR|ERVL -67762 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 179-49 chr2 148518724 148518865 + 2 NA Intergenic Intergenic -125957 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 359-86 chr11 40551539 40551784 + 2 NA intron (NM_020929, intron 2 of 4) L2a|LINE|L2 -258531 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 289-208 chr2 12340423 12340679 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 141421 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 285-246 chr20 52861059 52861309 + 2 NA Intergenic Intergenic -111174 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 417-318 chrX 122127826 122128045 + 2 NA Intergenic L1M2|LINE|L1 756963 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 302-217 chr2 86430873 86431080 + 2 NA Intergenic L1M2|LINE|L1 -10395 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 506-298 chr8 139412984 139413311 + 2 NA Intergenic Intergenic 289976 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 375-253 chr22 34806347 34806619 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 191433 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 246-50 chr10 59970778 59970989 + 2 NA Intergenic L2a|LINE|L2 -9970 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 379-329 chr7 138648270 138648516 + 2 NA intron (NM_174959, intron 4 of 11) AluSz|SINE|Alu 15831 NM_174959 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 463-131 chr2 19477207 19477493 + 2 NA Intergenic Intergenic -118727 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 484-185 chr4 35196698 35197120 + 2 NA Intergenic Intergenic -927162 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 275-286 chr5 33150828 33151080 + 2 NA Intergenic Intergenic -78781 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 134-78 chr6 119573264 119573387 + 2 NA intron (NR_134600, intron 2 of 3) L1MDa|LINE|L1 23517 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 328-376 chr3 178122348 178122601 + 2 NA Intergenic Intergenic -296727 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 230-76 chr12 17664842 17664983 + 2 NA Intergenic Intergenic -8387 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 126-19 chr13 103543140 103543243 + 2 NA Intergenic L1MEd|LINE|L1 117991 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 367-375 chr5 158571883 158572204 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -162270 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 489-55 chr12 49768607 49768904 + 2 NA Intergenic AluSx1|SINE|Alu 26946 NM_001098576 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 225-117 chr16 76892157 76892357 + 2 NA Intergenic Intergenic 23321 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 253-31 chr1 216726390 216726568 + 2 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -3007 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 305-229 chr19 32494062 32494282 + 2 NA Intergenic L2c|LINE|L2 -87018 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 523-14 chr1 185631654 185632010 + 2 NA Intergenic Intergenic -3344 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 333-510 chr6 101020997 101021243 + 2 NA Intergenic Intergenic -139748 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 365-10 chr1 76028862 76029159 + 2 NA Intergenic L1MC1|LINE|L1 17686 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 308-19 chr1 94057339 94057527 + 2 NA intron (NM_000350, intron 14 of 49) intron (NM_000350, intron 14 of 49) 63715 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 378-15 chr1 89321410 89321676 + 2 NA Intergenic L1M1|LINE|L1 -31181 NR_077244 729930 Hs.745054 NR_077244 LOC729930 - chromosome 11 open reading frame 74 pseudogene pseudo 240-201 chr19 14905896 14906054 + 2 NA Intergenic L1MA8|LINE|L1 -24620 NM_030901 26333 Hs.247717 NM_030901 ENSG00000185385 OR7A17 BC85395_4|HTPCRX19 olfactory receptor family 7 subfamily A member 17 protein-coding 360-180 chr18 11686260 11686592 + 2 NA Intergenic L1ME3Cz|LINE|L1 -2838 NM_182978 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 386-219 chr21 45586420 45586641 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -7124 NR_146912 105372840 Hs.406003 NR_146912 ENSG00000233922 LINC01694 - long intergenic non-protein coding RNA 1694 ncRNA 271-305 chr4 52396301 52396558 + 2 NA Intergenic L1MD1|LINE|L1 260110 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 322-127 chr12 62216857 62217039 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -24109 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 284-409 chr8 88615672 88615911 + 2 NA Intergenic L1M4|LINE|L1 -288308 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 256-182 chr19 35272824 35273000 + 2 NA intron (NM_001321150, intron 5 of 7) MIR|SINE|MIR 3950 NM_001321150 7392 Hs.454534 NM_003367 ENSG00000105698 USF2 FIP|bHLHb12 upstream transcription factor 2, c-fos interacting protein-coding 233-189 chr2 164277192 164277384 + 2 NA Intergenic Intergenic 291207 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 173-148 chr9 98335621 98335744 + 2 NA intron (NM_005458, intron 13 of 18) (CAA)n|Simple_repeat|Simple_repeat -80033 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 209-335 chr8 122686138 122686309 + 2 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 7883 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 236-359 chr8 108528153 108528332 + 2 NA Intergenic Intergenic 84618 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 343-322 chr22 34567870 34568129 + 2 NA Intergenic L2a|LINE|L2 429917 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 194-31 chr11 85184313 85184455 + 2 NA intron (NM_001142699, intron 4 of 27) intron (NM_001142699, intron 4 of 27) -260963 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 221-297 chr8 71449687 71449839 + 2 NA intron (NM_001370336, intron 2 of 17) Tigger1|DNA|TcMar-Tigger -87694 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 262-90 chr12 1841898 1842097 + 2 NA intron (NM_172364, intron 25 of 37).2 intron (NM_172364, intron 25 of 37).2 21432 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 346-171 chr16 8096088 8096300 + 2 NA Intergenic Intergenic 493644 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 546-159 chr4 378766 379221 + 2 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 28836 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 215-41 chr10 90197558 90197710 + 2 NA Intergenic Intergenic -240261 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 422-63 chr12 63041779 63042154 + 2 NA Intergenic Intergenic -106816 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 478-263 chr7 40440511 40440956 + 2 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 305757 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 478-182 chr3 41571078 41571441 + 2 NA intron (NR_136342, intron 29 of 34) intron (NR_136342, intron 29 of 34) 371754 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 435-151 chr3 38773592 38773919 + 2 NA intron (NM_006514, intron 3 of 26) HAL1|LINE|L1 20255 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 272-448 chr8 87103970 87104174 + 2 NA intron (NM_173538, intron 4 of 10) L2|LINE|L2 237657 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 583-165 chr8 129755401 129755816 + 2 NA intron (NM_031415, intron 6 of 13) L1MA2|LINE|L1 31016 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 405-251 chr5 78745942 78746266 + 2 NA Intergenic Intergenic -97332 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 452-40 chr11 24802386 24802733 + 2 NA intron (NM_001252010, intron 5 of 9) L1MB3|LINE|L1 305506 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 302-88 chr11 107515281 107515509 + 2 NA intron (NM_138775, intron 10 of 11) AluJr|SINE|Alu 50340 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 443-66 chr12 45647296 45647594 + 2 NA Intergenic Intergenic 80476 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 405-281 chr6 93215294 93215600 + 2 NA Intergenic L1PB4|LINE|L1 204112 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 440-267 chr9 78193454 78193779 + 2 NA Intergenic L2|LINE|L2 -42459 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 315-248 chr2 105655164 105655348 + 2 NA Intergenic Intergenic -44697 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 401-309 chr8 19303138 19303490 + 2 NA Intergenic Intergenic -10256 NR_156444 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 283-187 chr17 70193159 70193339 + 2 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 23714 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 229-102 chr13 65376879 65377100 + 2 NA Intergenic Intergenic -489058 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 235-276 chr5 18877745 18877890 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 1008455 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 324-119 chr12 48418151 48418372 + 2 NA Intergenic L2|LINE|L2 -54404 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 367-184 chr19 44431016 44431316 + 2 NA intron (NM_001278510, intron 5 of 5) intron (NM_001278510, intron 5 of 5) 17306 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 201-254 chr9 15847067 15847226 + 2 NA intron (NM_001355547, intron 21 of 24) intron (NM_001355547, intron 21 of 24) 283168 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 334-155 chr14 72338611 72338834 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -178098 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 338-562 chr8 123426232 123426485 + 2 NA intron (NM_018024, intron 1 of 5) L3|LINE|CR1 9584 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 442-59 chr12 89376955 89377387 + 2 NA Intergenic L2c|LINE|L2 -24670 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 326-587 chrX 78316547 78316726 + 2 NA intron (NM_001282187, intron 1 of 3) L1PBa|LINE|L1 10975 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 354-297 chr3 78699812 78700088 + 2 NA intron (NM_001145845, intron 6 of 28) L2c|LINE|L2 319509 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 413 chr1 4542202 4542555 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -29109 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 380-349 chr6 152428778 152429042 + 2 NA intron (NM_182961, intron 36 of 145) intron (NM_182961, intron 36 of 145) 48380 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 393-7 chr1 49612755 49613023 + 2 NA intron (NR_136623, intron 2 of 12) L1PA16|LINE|L1 -140804 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 348-350 chr4 36533948 36534194 + 2 NA intron (NR_149124, intron 3 of 4) MLT2B3|LTR|ERVL -107643 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 288-390 chr6 167016061 167016245 + 2 NA intron (NM_007045, intron 7 of 12) intron (NM_007045, intron 7 of 12) 16756 NM_007045 11116 Hs.487175 NM_007045 ENSG00000213066 FGFR1OP FOP FGFR1 oncogene partner protein-coding 367-289 chr3 110232847 110233130 + 2 NA Intergenic AluSc8|SINE|Alu 630160 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 327-169 chr15 49277836 49278073 + 2 NA intron (NM_001289030, intron 6 of 10) intron (NM_001289030, intron 6 of 10) 107707 NM_001289030 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 306-461 chr7 32108733 32108913 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -37387 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 250-224 chr2 162364832 162365023 + 2 NA Intergenic Intergenic 20559 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 289-276 chr21 21243116 21243323 + 2 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 96057 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 528-108 chr17 14986251 14986611 + 2 NA Intergenic Intergenic -28374 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 273-29 chr1 208123942 208124112 + 2 NA intron (NM_025179, intron 4 of 31) intron (NM_025179, intron 4 of 31) 120357 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 339-505 chr6 145184166 145184377 + 2 NA Intergenic L1MA3|LINE|L1 502606 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 570-46 chr11 91991036 91991467 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -233783 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 396-291 chr5 113214453 113214716 + 2 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 80354 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 601-124 chr5 118488481 118489051 + 2 NA intron (NR_104610, intron 4 of 9) Charlie1a|DNA|hAT-Charlie 73351 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 269-410 chr8 119059008 119059178 + 2 NA intron (NM_001324095, intron 3 of 7) intron (NM_001324095, intron 3 of 7) -8154 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 593-43 chr14 49849353 49849726 + 2 NA intron (NM_001301732, intron 3 of 31) intron (NM_001301732, intron 3 of 31) 3249 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 228-46 chr10 107705374 107705572 + 2 NA Intergenic Intergenic 363820 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 456-202 chr3 85379860 85380114 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -5723 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 283-352 chr5 27820272 27820454 + 2 NA Intergenic Intergenic 348071 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 375-312 chr5 8267422 8267764 + 2 NA Intergenic MIRb|SINE|MIR 189971 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 557-22 chr10 88637835 88638321 + 2 NA Intergenic Intergenic -26364 NM_001198830 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 755-2 chr1 42096968 42097409 + 2 NA Intergenic L1ME3A|LINE|L1 -56222 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 390-208 chr20 12507349 12507620 + 2 NA Intergenic Intergenic 429479 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 315-451 chr7 101410533 101410690 + 2 NA intron (NM_133457, intron 1 of 12) AluSx3|SINE|Alu 47736 NM_001278563 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 615-147 chr9 132766435 132766814 + 2 NA intron (NM_001317959, intron 13 of 14) L1MA4|LINE|L1 96160 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 711-76 chr9 126009476 126010055 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 261582 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 281-320 chr4 78277567 78277727 + 2 NA intron (NM_001166133, intron 9 of 41) intron (NM_001166133, intron 9 of 41) -11338 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 370-332 chr4 34946847 34947097 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -677225 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 221-49 chr11 31040104 31040282 + 2 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) -47507 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 409-63 chr13 43990759 43991105 + 2 NA Intergenic Intergenic -31403 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 344-88 chr11 111117407 111117678 + 2 NA Intergenic Intergenic -20224 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 412-10 chr1 110260307 110260604 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 50141 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 320-596 chr9 105267074 105267341 + 2 NA intron (NM_001330731, intron 1 of 15) HAL1|LINE|L1 22556 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 190-156 chr6 66214566 66214710 + 2 NA Intergenic MER61-int|LTR|ERV1 426759 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 324-217 chr17 60741451 60741668 + 2 NA intron (NM_001330413, intron 5 of 25) intron (NM_001330413, intron 5 of 25) 63708 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 246-89 chr12 23397702 23397834 + 2 NA Intergenic Intergenic 186818 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 298-500 chr9 75274453 75274745 + 2 NA Intergenic L1PB3|LINE|L1 186085 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 598-77 chr2 156673297 156673730 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 237134 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 225-355 chr8 78112171 78112368 + 2 NA Intergenic Intergenic -404071 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 293-412 chr7 104891020 104891256 + 2 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 35507 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 245-312 chr6 137996276 137996459 + 2 NA Intergenic L1ME2|LINE|L1 -50567 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 1133-5 chr16 80660212 80660978 + 2 NA intron (NM_152342, intron 2 of 6) L1MEi|LINE|L1 -87787 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 136-87 chr8 88726949 88727043 + 2 NA Intergenic Intergenic -399513 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 160-16 chr11 97770272 97770394 + 2 NA Intergenic L1M5|LINE|L1 -1250616 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 484-206 chr5 29879784 29880152 + 2 NA promoter-TSS (NR_134264) promoter-TSS (NR_134264) -592 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 569-162 chr7 8236022 8236526 + 2 NA intron (NM_001350826, intron 1 of 14) L1ME3E|LINE|L1 25778 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 241-117 chr14 76664297 76664454 + 2 NA Intergenic MER33|DNA|hAT-Charlie -97093 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 530-181 chr4 72844663 72845072 + 2 NA Intergenic Intergenic 224849 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 218-143 chr2 13777160 13777305 + 2 NA Intergenic L2c|LINE|L2 623726 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 547-74 chr15 71497593 71497987 + 2 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -49446 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 314-438 chr4 120411058 120411216 + 2 NA Intergenic L1MA1|LINE|L1 -344289 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 146-63 chr4 67618118 67618236 + 2 NA 3' UTR (NM_018227, exon 33 of 33) 3' UTR (NM_018227, exon 33 of 33) 59450 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 372-289 chr20 57764144 57764340 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -52706 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 344-15 chr1 101564979 101565205 + 2 NA Intergenic Intergenic 241255 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 619-40 chr14 39507550 39508061 + 2 NA Intergenic Intergenic -75305 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 573-46 chr11 133565400 133565943 + 2 NA Intergenic Intergenic -33170 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 300-218 chr2 192436681 192436908 + 2 NA Intergenic L1ME5|LINE|L1 -241861 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 297-199 chr2 12639811 12639973 + 2 NA Intergenic Intergenic -76980 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 360-171 chr17 69333924 69334211 + 2 NA Intergenic Intergenic -6934 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 239-285 chr4 108113951 108114141 + 2 NA intron (NM_001130713, intron 3 of 10) intron (NM_001130713, intron 3 of 10) 52751 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 240-361 chr5 150905774 150905953 + 2 NA promoter-TSS (NM_001172832) promoter-TSS (NM_001172832) -880 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 465-80 chr14 48902647 48903052 + 2 NA Intergenic AluY|SINE|Alu 683531 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 227-237 chr3 145108138 145108339 + 2 NA Intergenic Intergenic 960947 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 648-23 chr11 111046845 111047209 + 2 NA Intergenic MIRc|SINE|MIR 50291 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 293-485 chrX 26204086 26204315 + 2 NA Intergenic Intergenic 11760 NM_173523 158809 Hs.376011 NM_173523 ENSG00000176746 MAGEB6 CT3.4|MAGE-B6|MAGEB6A MAGE family member B6 protein-coding 342-560 chr9 103855117 103855371 + 2 NA Intergenic Intergenic -144465 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 543-190 chr4 136849515 136850004 + 2 NA intron (NR_149105, intron 3 of 3) FLAM_C|SINE|Alu -343997 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 590-161 chr7 89717708 89718218 + 2 NA Intergenic Intergenic -401437 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 223-46 chr11 12314075 12314205 + 2 NA intron (NM_032867, intron 3 of 8) L1MEg|LINE|L1 27240 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 348-406 chr5 51723205 51723492 + 2 NA Intergenic L1MC|LINE|L1 -284683 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 430-106 chr16 48806716 48807034 + 2 NA Intergenic L1MCa|LINE|L1 -196695 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 476-3 chr1 58369527 58369866 + 2 NA Intergenic MIRb|SINE|MIR -119149 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 674-5 chr1 104827022 104827445 + 2 NA Intergenic Intergenic 754210 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 326-20 chr1 91435357 91435520 + 2 NA Intergenic Intergenic -30601 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 209-121 chr16 82790518 82790679 + 2 NA intron (NR_110938, intron 1 of 2) THE1C|LTR|ERVL-MaLR 17279 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 463-280 chr8 61301480 61301858 + 2 NA intron (NM_173519, intron 2 of 5) MIR|SINE|MIR 13699 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 533-28 chr11 106715521 106716022 + 2 NA intron (NM_000855, intron 6 of 7) L2c|LINE|L2 302705 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 189-189 chr7 63949624 63949747 + 2 NA Intergenic Intergenic -49121 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 504-87 chr15 94203132 94203487 + 2 NA Intergenic LTR71A|LTR|ERV1 -94892 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 369-205 chr2 112993741 112994094 + 2 NA Intergenic Intergenic -11542 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 216-135 chr17 69823513 69823630 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -138136 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 374-191 chr2 102256090 102256394 + 2 NA Intergenic Intergenic -55260 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 181-86 chr21 28527451 28527603 + 2 NA Intergenic MER67A|LTR|ERV1 -11791 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 493-74 chr14 25483440 25483838 + 2 NA Intergenic Intergenic -433342 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 410-198 chr3 104537082 104537337 + 2 NA Intergenic L1PA13|LINE|L1 -829504 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 402-157 chr2 109651910 109652258 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 37720 NM_023016 65124 Hs.355455 NM_023016 ENSG00000198142 SOWAHC ANKRD57|C2orf26 sosondowah ankyrin repeat domain family member C protein-coding 372-134 chr13 100005375 100005621 + 2 NA Intergenic L1MEf|LINE|L1 -7589 NR_047483 100861542 Hs.508571 NR_047483 ENSG00000260738 LINC00554 lncZic2 long intergenic non-protein coding RNA 554 ncRNA 310-198 chr18 13145112 13145369 + 2 NA Intergenic L1MB2|LINE|L1 -73520 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 414-258 chr5 15341107 15341373 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -74680 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 519-214 chr7 97413394 97413736 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 296972 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 371-379 chr8 68812188 68812508 + 2 NA intron (NR_146187, intron 12 of 13) intron (NR_146187, intron 12 of 13) 291842 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 722-66 chr6 50899417 50899966 + 2 NA Intergenic L1MC2|LINE|L1 80820 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 555-171 chr6 19148026 19148374 + 2 NA intron (NR_110860, intron 4 of 10) L1ME3A|LINE|L1 32280 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 282-161 chr17 30868226 30868477 + 2 NA exon (NM_024857, exon 12 of 23) exon (NM_024857, exon 12 of 23) 36385 NM_024857 79915 Hs.528902 NM_024857 ENSG00000176208 ATAD5 C17orf41|ELG1|FRAG1 ATPase family AAA domain containing 5 protein-coding 183-33 chr12 40570401 40570572 + 2 NA exon (NM_173600, exon 174 of 174) exon (NM_173600, exon 174 of 174) -121953 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 398-267 chr5 42831518 42831828 + 2 NA Intergenic MER20|DNA|hAT-Charlie -19597 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 903-42 chr8 139718950 139719598 + 2 NA Intergenic L1M5|LINE|L1 -16151 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 340-419 chr4 133700744 133700928 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 500953 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 330-65 chr10 84322598 84322846 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -5867 NM_018999 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 338-30 chr1 194926856 194927130 + 2 NA Intergenic Intergenic 1161722 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 170-53 chr15 68062652 68062785 + 2 NA intron (NM_001320687, intron 2 of 14) intron (NM_001320687, intron 2 of 14) 8142 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 363-143 chr14 72533276 72533503 + 2 NA intron (NM_001370288, intron 15 of 16) Tigger1|DNA|TcMar-Tigger 16569 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 237-40 chr10 109205164 109205341 + 2 NA Intergenic Intergenic 717994 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 328-400 chr4 59647409 59647699 + 2 NA Intergenic Intergenic 633981 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 320-278 chr2 133795837 133796007 + 2 NA Intergenic L1MA9|LINE|L1 -227459 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 316-22 chr1 113702730 113702910 + 2 NA intron (NM_001323043, intron 15 of 18) L1MEg|LINE|L1 56335 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 335-282 chr2 222396462 222396783 + 2 NA Intergenic AluSx4|SINE|Alu -27366 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 217-43 chr10 56798274 56798454 + 2 NA Intergenic Intergenic -437091 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 590-9 chr1 169606305 169606723 + 2 NA intron (NM_003005, intron 9 of 16) intron (NM_003005, intron 9 of 16) -19983 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 305-303 chr20 11938421 11938654 + 2 NA Intergenic MLT2B2|LTR|ERVL 20644 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 386-102 chr14 63915176 63915474 + 2 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 62321 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 240-108 chr12 45079469 45079589 + 2 NA Intergenic Intergenic -14118 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 133-44 chr21 30091195 30091288 + 2 NA Intergenic Intergenic 75564 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 692-77 chr5 103659593 103660186 + 2 NA Intergenic Intergenic -97100 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 552-191 chr6 136242976 136243305 + 2 NA intron (NM_001099286, intron 3 of 7) intron (NM_001099286, intron 3 of 7) 7171 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 300-249 chr20 63765379 63765629 + 2 NA intron (NM_001369741, intron 3 of 4) AluJr|SINE|Alu 25728 NM_020062 56731 Hs.435126 NM_020062 ENSG00000125520 SLC2A4RG GEF|HDBP-1|HDBP1|Si-1-2|Si-1-2-19 SLC2A4 regulator protein-coding 341-323 chr3 16532970 16533197 + 2 NA Intergenic L1MB3|LINE|L1 -3235 NR_103843 100996597 Hs.599432 NR_103843 ENSG00000233570 LINC00690 - long intergenic non-protein coding RNA 690 ncRNA 301-496 chrX 98555897 98556144 + 2 NA Intergenic Intergenic -991485 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 345-449 chr5 164659397 164659734 + 2 NA Intergenic Intergenic 189286 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 603-142 chr6 70234444 70235015 + 2 NA intron (NM_001851, intron 34 of 37) intron (NM_001851, intron 34 of 37) 48468 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 213-161 chr20 41299391 41299530 + 2 NA intron (NM_015035, intron 1 of 3) intron (NM_015035, intron 1 of 3) 660 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 526-80 chr14 82974255 82974671 + 2 NA Intergenic L1MC4|LINE|L1 331831 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 639-122 chr9 108524515 108524897 + 2 NA Intergenic Intergenic 331280 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 178-149 chr8 117848115 117848282 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 72715 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 271-24 chr1 197854150 197854305 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -48403 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 243-212 chr2 79680397 79680578 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -31128 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 330-523 chr8 96096450 96096679 + 2 NA Intergenic Intergenic 64242 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 298-386 chr5 164936194 164936385 + 2 NA Intergenic L1M5|LINE|L1 466010 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 254-219 chr20 6667412 6667608 + 2 NA Intergenic Intergenic 68626 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 482-23 chr1 213318334 213318643 + 2 NA Intergenic Intergenic 267247 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 265-371 chr7 117597449 117597598 + 2 NA intron (NM_000492, intron 15 of 26) MER30B|DNA|hAT-Charlie -32847 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 316-220 chr18 10099133 10099393 + 2 NA Intergenic Intergenic 185247 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 373-330 chr5 106675564 106675930 + 2 NA Intergenic MIRb|SINE|MIR 335267 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 410-201 chr3 123805672 123806042 + 2 NA intron (NM_001321309, intron 3 of 32) MIRb|SINE|MIR 78475 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 246-266 chr3 107926614 107926795 + 2 NA intron (NR_015394, intron 2 of 2) MIR|SINE|MIR 43499 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 476-5 chr1 79239685 79240068 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -233146 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 453-121 chr2 113806379 113806702 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -49898 NR_104470 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 281-197 chr2 32192280 32192535 + 2 NA exon (NM_017964, exon 6 of 14) exon (NM_017964, exon 6 of 14) 26543 NM_001330479 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 115-10 chr12 39479385 39479494 + 2 NA Intergenic L1MEd|LINE|L1 -36319 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 486-309 chr9 81782275 81782619 + 2 NA Intergenic L1ME1|LINE|L1 92734 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 297-76 chr11 54541127 54541300 + 2 NA Intergenic ALR/Alpha|Satellite|centr 62785 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 436-136 chr2 102430613 102431003 + 2 NA intron (NM_003853, intron 5 of 11) L1MA4|LINE|L1 -1481 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 280-155 chr16 72441898 72442089 + 2 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 222977 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 422-59 chr12 45232035 45232385 + 2 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) 16115 NM_001025356 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 255-382 chr7 41675740 41675887 + 2 NA Intergenic Intergenic -18106 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 317-37 chr1 238949510 238949771 + 2 NA Intergenic Intergenic -436928 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 180-177 chr9 9225131 9225298 + 2 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 367196 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 698-84 chr8 86265929 86266363 + 2 NA Intergenic Intergenic -35765 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 349-516 chr9 22425848 22426148 + 2 NA Intergenic LTR16B1|LTR|ERVL -20826 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 463-293 chr8 126684408 126684786 + 2 NA Intergenic Intergenic -126119 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 231-313 chr6 124909438 124909640 + 2 NA non-coding (NR_026876, exon 7 of 7) non-coding (NR_026876, exon 7 of 7) -53006 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 512-245 chr6 146073381 146073789 + 2 NA intron (NM_001278065, intron 2 of 9) A-rich|Low_complexity|Low_complexity 44387 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 205-216 chr5 14256010 14256151 + 2 NA intron (NM_007118, intron 1 of 56) MSTB|LTR|ERVL-MaLR 112738 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 504-266 chr8 129341730 129342090 + 2 NA Intergenic L2b|LINE|L2 -100670 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 437-246 chr6 165281941 165282226 + 2 NA intron (NM_144980, intron 7 of 8) intron (NM_144980, intron 7 of 8) 27522 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 420-132 chr2 46675487 46675714 + 2 NA Intergenic L1M4c|LINE|L1 -23360 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 180-173 chr8 88648203 88648314 + 2 NA Intergenic Intergenic -320775 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 163-121 chr8 67422082 67422173 + 2 NA TTS (NM_020361) TTS (NM_020361) 78293 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 416-79 chr11 103297065 103297314 + 2 NA intron (NM_001377, intron 75 of 88) L2|LINE|L2 187763 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 182-89 chr2 80803382 80803546 + 2 NA Intergenic Intergenic 490085 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 343-156 chr15 39217311 39217641 + 2 NA Intergenic L1MA2|LINE|L1 -33193 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 326-130 chr12 114031290 114031503 + 2 NA Intergenic Intergenic -65071 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 359-126 chr12 122901805 122902130 + 2 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat -5843 NM_024667 79720 Hs.507162 NM_024667 ENSG00000139722 VPS37B - VPS37B subunit of ESCRT-I protein-coding 569-130 chr4 12971310 12971782 + 2 NA Intergenic Intergenic 512794 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 228-22 chr1 171816362 171816544 + 2 NA Intergenic Intergenic -25045 NM_001350205 26052 Hs.654775 NM_015569 ENSG00000197959 DNM3 Dyna III dynamin 3 protein-coding 328-352 chr3 72330204 72330420 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 116311 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 287-172 chr18 39239876 39240099 + 2 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 382188 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 237-206 chr20 15988244 15988406 + 2 NA intron (NM_001351663, intron 15 of 17) intron (NM_001351663, intron 15 of 17) -2443 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 484-64 chr14 61310463 61310828 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -10798 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 447-171 chr3 65341553 65341936 + 2 NA Intergenic L2|LINE|L2 -552072 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 526-59 chr12 46460299 46460748 + 2 NA intron (NR_125378, intron 3 of 3) intron (NR_125378, intron 3 of 3) 76416 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 530-195 chr5 40685861 40686251 + 2 NA intron (NM_000958, intron 2 of 2) intron (NM_000958, intron 2 of 2) 6141 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 579-50 chr16 78912260 78912676 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 688269 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 446-264 chr6 49367187 49367631 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 95844 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 371-258 chr3 148066353 148066631 + 2 NA Intergenic AluSq|SINE|Alu -11667 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 1035-7 chr2 44866005 44866821 + 2 NA Intergenic L1ME3Cz|LINE|L1 72475 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 477-36 chr10 36488400 36488780 + 2 NA Intergenic L1MB3|LINE|L1 -637267 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 284-174 chr18 65595969 65596198 + 2 NA Intergenic Intergenic -154169 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 340-176 chr15 87395713 87395963 + 2 NA Intergenic L1MCc|LINE|L1 -181091 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 309-95 chr12 9130600 9130767 + 2 NA Intergenic L1MB2|LINE|L1 -14454 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 423-147 chr2 226193240 226193537 + 2 NA Intergenic Intergenic 50594 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 298-5 chr1 77404845 77405049 + 2 NA intron (NM_012093, intron 6 of 13) intron (NM_012093, intron 6 of 13) 121860 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 462-137 chr2 50729796 50730224 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -33748 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 475-140 chr2 114855737 114856142 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -22391 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 276-140 chr14 32843116 32843330 + 2 NA Intergenic L1MC4|LINE|L1 -95656 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 865-19 chr18 2047920 2048485 + 2 NA Intergenic L2a|LINE|L2 523303 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 123-60 chr8 131049954 131050022 + 2 NA Intergenic Intergenic -9079 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 627-20 chr11 94901512 94901989 + 2 NA Intergenic L1PA16|LINE|L1 71806 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 214-24 chr1 200808904 200809076 + 2 NA intron (NM_001297707, intron 3 of 17) L2a|LINE|L2 -63991 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 315-125 chr14 44815288 44815586 + 2 NA Intergenic Intergenic -16311 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 196-70 chr14 51558103 51558218 + 2 NA intron (NR_047477, intron 2 of 3) intron (NR_047477, intron 2 of 3) 41792 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 205-230 chr5 144962243 144962406 + 2 NA Intergenic Intergenic 756933 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 388-186 chr20 39486742 39486984 + 2 NA Intergenic LTR19-int|LTR|ERV1 -262115 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 590-3 chr1 43487585 43487961 + 2 NA Intergenic L1MB7|LINE|L1 -33784 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 235-104 chr14 71850244 71850441 + 2 NA Intergenic Intergenic -81829 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 323-289 chr20 7015366 7015665 + 2 NA Intergenic Intergenic 238687 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 254-259 chr3 177202718 177202898 + 2 NA Intergenic AluJr4|SINE|Alu -5326 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 515-183 chr4 76462545 76462954 + 2 NA intron (NM_020859, intron 1 of 10) (TCTCCC)n|Simple_repeat|Simple_repeat 27520 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 334-247 chr2 18815512 18815798 + 2 NA Intergenic Intergenic 211316 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 348-243 chr2 175723639 175723834 + 2 NA Intergenic L1MEc|LINE|L1 278531 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 545-74 chr14 72504308 72504676 + 2 NA intron (NM_001370280, intron 13 of 17) MLT1A0-int|LTR|ERVL-MaLR -12328 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 297-183 chr18 7606151 7606344 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 38931 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 328-323 chr20 60266388 60266638 + 2 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -41961 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 236-343 chr8 30499967 30500141 + 2 NA intron (NM_001008710, intron 4 of 8) intron (NM_001008710, intron 4 of 8) -114653 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 398-255 chr5 3571204 3571591 + 2 NA Intergenic L1MA7|LINE|L1 -24435 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 266-66 chr11 81282848 81283038 + 2 NA Intergenic Intergenic -520140 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 390-28 chr10 5435543 5435837 + 2 NA intron (NM_001047160, intron 3 of 11) intron (NM_001047160, intron 3 of 11) -10861 NR_073040 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 212-152 chr2 62430034 62430182 + 2 NA Intergenic MamRep1151|LTR?|LTR? 76087 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 475-176 chr3 28733735 28734004 + 2 NA intron (NR_038840, intron 2 of 4) L1PA10|LINE|L1 158591 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 482-90 chr16 63697212 63697691 + 2 NA Intergenic Intergenic 1424612 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 295-309 chr3 124247294 124247562 + 2 NA intron (NM_001024660, intron 3 of 59) intron (NM_001024660, intron 3 of 59) 114499 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 172-124 chr7 32112833 32112970 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -41465 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 189-155 chr5 25660450 25660600 + 2 NA Intergenic Intergenic 469572 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 360-103 chr13 36504673 36504928 + 2 NA Intergenic MER21C|LTR|ERVL 72305 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 663-76 chr4 78722408 78722925 + 2 NA Intergenic Intergenic -53684 NM_017593 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 296-413 chr6 121409901 121410113 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -25639 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 250-418 chr8 57509433 57509646 + 2 NA Intergenic Intergenic 165752 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 339-208 chr17 20950088 20950389 + 2 NA intron (NR_160717, intron 2 of 4) AluJb|SINE|Alu 11672 NR_160712 339260 Hs.661076 NR_123730 ENSG00000233098 LOC339260 - uncharacterized LOC339260 ncRNA 284-412 chr8 103812786 103812991 + 2 NA intron (NM_001348495, intron 4 of 24) intron (NM_001348495, intron 4 of 24) -6332 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 138-19 chr13 71423669 71423770 + 2 NA Intergenic Intergenic 408578 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 266-272 chr4 30334523 30334696 + 2 NA Intergenic Tigger17|DNA|TcMar-Tigger -385760 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 493-196 chr3 33934450 33934844 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 136017 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 340-308 chr20 9653668 9653916 + 2 NA intron (NM_020341, intron 3 of 10) MLT1D|LTR|ERVL-MaLR -138794 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 220-328 chr6 138880498 138880668 + 2 NA intron (NM_001077706, intron 14 of 21) L2b|LINE|L2 84472 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 272-405 chr6 155983551 155983753 + 2 NA Intergenic Intergenic 36855 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 282-246 chr2 213525770 213526019 + 2 NA intron (NR_047660, intron 9 of 14) HAL1|LINE|L1 -232173 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 229-289 chr5 7072075 7072277 + 2 NA Intergenic Intergenic 197178 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 185-39 chr11 98264785 98264965 + 2 NA Intergenic L1M2|LINE|L1 -756074 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 280-16 chr1 89766204 89766382 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -54739 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 539-134 chr20 55359973 55360458 + 2 NA Intergenic Intergenic -62828 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 318-286 chr2 124822443 124822750 + 2 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 797309 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 375-222 chr2 151327169 151327499 + 2 NA Intergenic Intergenic -30258 NM_007115 7130 Hs.437322 NM_007115 ENSG00000123610 TNFAIP6 TSG-6|TSG6 TNF alpha induced protein 6 protein-coding 265-160 chr18 73285568 73285812 + 2 NA Intergenic Intergenic -21192 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 340-154 chr14 72319726 72320003 + 2 NA intron (NM_001370288, intron 2 of 16) L1M7|LINE|L1 -196956 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 207-72 chr13 80752337 80752507 + 2 NA Intergenic Intergenic -265969 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 858-8 chr11 79007782 79008435 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 394001 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 347-381 chr5 26790408 26790661 + 2 NA Intergenic Intergenic 248052 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 370-429 chr7 145374821 145375052 + 2 NA Intergenic Intergenic -538883 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 213-71 chr12 43994715 43994885 + 2 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 158719 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 131-37 chr2 55201600 55201675 + 2 NA intron (NR_148539, intron 1 of 3) L1MA3|LINE|L1 -30266 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 418-191 chr4 97179373 97179661 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -187409 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 365-422 chr9 28242255 28242470 + 2 NA intron (NM_152570, intron 5 of 6) L1PA10|LINE|L1 476943 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 129-62 chr4 123146816 123146912 + 2 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) 223786 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 125-67 chr7 112335568 112335640 + 2 NA intron (NM_021994, intron 7 of 11) MIR|SINE|MIR -87540 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 289-70 chr10 106645569 106645827 + 2 NA intron (NM_001206569, intron 18 of 25) L1ME3A|LINE|L1 505533 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 254-60 chr11 81529088 81529277 + 2 NA Intergenic Intergenic 361654 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 828-26 chr2 126287511 126288178 + 2 NA Intergenic LTR53|LTR|ERVL -169859 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 357-230 chr2 219956865 219957081 + 2 NA Intergenic L1MEf|LINE|L1 -50408 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 339-391 chr3 193661415 193661670 + 2 NA intron (NM_130831, intron 22 of 27) intron (NM_130831, intron 22 of 27) -34210 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 162-22 chr11 87500999 87501128 + 2 NA Intergenic Intergenic 218348 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 340-358 chr3 31469990 31470297 + 2 NA Intergenic Intergenic -62782 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 196-232 chr7 3421520 3421655 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 120335 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 499-220 chr6 27960239 27960706 + 2 NA Intergenic L1MB3|LINE|L1 3231 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 563-47 chr13 111454376 111454744 + 2 NA Intergenic L1ME1|LINE|L1 133918 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 715-11 chr11 84612087 84612673 + 2 NA intron (NM_001351274, intron 5 of 26) L1ME1|LINE|L1 108562 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 382-162 chr19 35236155 35236474 + 2 NA Intergenic AluSz|SINE|Alu -7589 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 513-78 chr14 66965491 66965959 + 2 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -223715 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 191-104 chr2 119818826 119818970 + 2 NA intron (NM_002830, intron 2 of 26) L1MEg|LINE|L1 58976 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 227-163 chr2 55130153 55130331 + 2 NA intron (NM_001321904, intron 1 of 9) L1ME3G|LINE|L1 7589 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 240-249 chr2 199315481 199315642 + 2 NA intron (NM_001172509, intron 9 of 10) intron (NM_001172509, intron 9 of 10) 142378 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 641-75 chr3 19829841 19830270 + 2 NA Intergenic L1PREC2|LINE|L1 104162 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 549-100 chr2 8767284 8767783 + 2 NA intron (NM_001348745, intron 22 of 22) intron (NM_001348745, intron 22 of 22) 70080 NM_020738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 506-234 chr5 100944083 100944413 + 2 NA Intergenic Intergenic -40966 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 262-61 chr10 92858744 92858887 + 2 NA intron (NM_001319195, intron 1 of 21) AluSx|SINE|Alu 10295 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 474-217 chr4 108050195 108050593 + 2 NA intron (NM_001130714, intron 9 of 9) intron (NM_001130714, intron 9 of 9) 45730 NM_001331027 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 339-148 chr14 39694054 39694322 + 2 NA Intergenic Intergenic -261688 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 428-266 chr6 168093524 168093823 + 2 NA Intergenic Intergenic -12116 NR_110312 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 276-113 chr12 59237196 59237404 + 2 NA Intergenic L1ME3D|LINE|L1 -316762 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 338-93 chr11 24002794 24003079 + 2 NA Intergenic Intergenic -494117 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 502-199 chr4 58220082 58220424 + 2 NA Intergenic L1MA3|LINE|L1 316075 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 360-385 chr5 151277879 151278104 + 2 NA intron (NM_181774, intron 9 of 9) MIRb|SINE|MIR 24806 NM_000405 2760 Hs.483873 NM_000405 ENSG00000196743 GM2A GM2-AP|SAP-3 GM2 ganglioside activator protein-coding 754-76 chr7 16332028 16332546 + 2 NA intron (NM_001101417, intron 2 of 8) L1MCa|LINE|L1 89251 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 521-24 chr10 18745791 18746265 + 2 NA Intergenic Intergenic 86597 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 335-376 chr4 20181100 20181293 + 2 NA Intergenic Intergenic -70709 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 329-111 chr12 15725659 15725919 + 2 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 63599 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 246-24 chr1 213593970 213594209 + 2 NA Intergenic AluSz6|SINE|Alu -330660 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 336-12 chr1 45094742 45095060 + 2 NA intron (NM_020883, intron 1 of 13) L1MC5|LINE|L1 82647 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 485-221 chr5 38817220 38817582 + 2 NA intron (NR_109951, intron 1 of 3) LTR16A|LTR|ERVL 28428 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 365-7 chr1 69759412 69759725 + 2 NA intron (NM_001366839, intron 3 of 25) intron (NM_001366839, intron 3 of 25) -159754 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 510-270 chr8 18628991 18629379 + 2 NA intron (NM_015310, intron 11 of 15) L1MEc|LINE|L1 179682 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 872-6 chr1 190739246 190739904 + 2 NA intron (NR_033922, intron 2 of 4) L1ME3A|LINE|L1 114685 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 226-159 chr2 49207994 49208140 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -53540 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 281-404 chr7 3364088 3364330 + 2 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 62957 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 247-388 chr7 97773741 97773918 + 2 NA Intergenic Intergenic 41743 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 306-371 chr4 157583373 157583650 + 2 NA Intergenic L1ME4b|LINE|L1 11021 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 677-76 chr7 64289049 64289520 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -24589 NM_001294255 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 288-142 chr16 13696458 13696629 + 2 NA Intergenic L1MEg|LINE|L1 -223614 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 282-463 chr8 120092104 120092294 + 2 NA Intergenic LTR16D2|LTR|ERVL -32903 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 628-21 chr10 24718353 24718844 + 2 NA intron (NM_001367447, intron 2 of 24) intron (NM_001367447, intron 2 of 24) 4150 NM_001367454 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 225-136 chr18 61292191 61292402 + 2 NA Intergenic Intergenic -41134 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 280-402 chr8 65349552 65349824 + 2 NA Intergenic Intergenic -169348 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 350-362 chr4 110865722 110865996 + 2 NA Intergenic Intergenic -5212 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 389-105 chr14 78818874 78819219 + 2 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -380936 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 339-301 chr2 223215695 223215913 + 2 NA Intergenic Intergenic 163874 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 477-185 chr21 45904596 45904965 + 2 NA intron (NR_145493, intron 6 of 12) MER89-int|LTR|ERV1 54819 NM_020528 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 511-36 chr11 56421922 56422280 + 2 NA Intergenic Intergenic -3869 NM_001004744 219479 Hs.553630 NM_001004744 ENSG00000279961 OR5R1 OR11-185|OR5R1P olfactory receptor family 5 subfamily R member 1 (gene/pseudogene) protein-coding 288-372 chr6 68489356 68489621 + 2 NA Intergenic Intergenic 144836 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 170-99 chr3 159907499 159907606 + 2 NA Intergenic Intergenic 67691 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 236-329 chr7 52057039 52057205 + 2 NA Intergenic L1MEg|LINE|L1 -663866 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 283-423 chr7 67996794 67997035 + 2 NA Intergenic Intergenic -23339 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 356-74 chr11 24586007 24586264 + 2 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 89082 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 224-174 chr20 16965144 16965304 + 2 NA Intergenic Intergenic 216871 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 304-476 chr7 203553 203761 + 2 NA intron (NM_020223, intron 2 of 9) intron (NM_020223, intron 2 of 9) 11086 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 680-125 chr9 137702254 137702769 + 2 NA intron (NM_001354612, intron 1 of 8) MSTA-int|LTR|ERVL-MaLR 83506 NM_001354259 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 316-210 chr17 53951470 53951750 + 2 NA Intergenic L1MA4A|LINE|L1 128683 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 229-267 chr3 182101058 182101234 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 148782 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 390-315 chr6 2073918 2074140 + 2 NA intron (NM_001253846, intron 4 of 10) L1MA4A|LINE|L1 101962 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 363-199 chr19 52493097 52493289 + 2 NA intron (NM_001099694, intron 3 of 5) CpG -34463 NM_001321425 388558 Hs.729294 NM_001039886 ENSG00000198482 ZNF808 - zinc finger protein 808 protein-coding 673-28 chr12 130448308 130448902 + 2 NA intron (NM_001351226, intron 9 of 21) intron (NM_001351226, intron 9 of 21) 110718 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 340-504 chr7 33285765 33286039 + 2 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 156338 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 294-448 chr7 130625450 130625615 + 2 NA intron (NM_001290033, intron 5 of 19) L1MCa|LINE|L1 43216 NM_012133 26958 Hs.6421 NM_012133 ENSG00000158623 COPG2 2-COP|gamma-2-COP coatomer protein complex subunit gamma 2 protein-coding 548-244 chr8 135173717 135174106 + 2 NA Intergenic MER31B|LTR|ERV1 -60220 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 193-142 chr3 145005592 145005730 + 2 NA Intergenic Intergenic 1032580 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 399-114 chr17 48219776 48220148 + 2 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -63451 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 308-187 chr17 66320497 66320785 + 2 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 18028 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 113-27 chr2 4133788 4133876 + 2 NA Intergenic Intergenic 159671 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 353-45 chr10 9048622 9048915 + 2 NA Intergenic Intergenic 150779 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 520-54 chr11 85323354 85323736 + 2 NA intron (NM_001142699, intron 3 of 27) L1MA4|LINE|L1 303725 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 346-120 chr13 65365023 65365266 + 2 NA Intergenic Intergenic -500903 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 275-26 chr1 239491382 239491551 + 2 NA intron (NM_001347716, intron 1 of 7) L1MA5|LINE|L1 104898 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 442-70 chr14 20715132 20715502 + 2 NA Intergenic LTR10A|LTR|ERV1 26553 NM_194431 6038 Hs.283749 NM_002937 ENSG00000258818 RNASE4 RAB1|RNS4 ribonuclease A family member 4 protein-coding 614-26 chr12 47230409 47230831 + 2 NA intron (NM_138371, intron 3 of 3) AluSz|SINE|Alu -14177 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 330-11 chr1 50041785 50042068 + 2 NA Intergenic Intergenic -6129 NM_001144777 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 229-3 chr1 36923027 36923184 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 111410 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 322-307 chr21 40547857 40548171 + 2 NA intron (NR_073202, intron 3 of 32) intron (NR_073202, intron 3 of 32) 82753 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 410-218 chr4 71158382 71158756 + 2 NA Intergenic Intergenic -28690 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 604-139 chr6 25222360 25222825 + 2 NA Intergenic Intergenic 38815 NR_110862 101928663 Hs.561600 NR_110862 LOC101928663 - uncharacterized LOC101928663 ncRNA 253-239 chr22 34631273 34631467 + 2 NA Intergenic L1PA15-16|LINE|L1 366546 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 479-142 chr3 87791514 87791856 + 2 NA Intergenic Intergenic -1021 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 404-282 chr6 164349302 164349542 + 2 NA Intergenic L1MC5a|LINE|L1 472641 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 389-358 chr8 67860918 67861302 + 2 NA Intergenic Intergenic -90936 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 286-400 chr6 167414927 167415194 + 2 NA Intergenic Intergenic -30550 NR_163193 6953 Hs.351 NM_004610 ENSG00000203690 TCP10 TCP10A t-complex 10 pseudo 510-244 chr6 40498510 40498875 + 2 NA intron (NM_020737, intron 1 of 2) L2a|LINE|L2 88672 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 357-376 chr6 19646797 19647018 + 2 NA Intergenic L1ME4b|LINE|L1 157852 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 243-342 chr4 188254422 188254635 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 115087 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 322-415 chr5 22969290 22969506 + 2 NA Intergenic L1PA15|LINE|L1 -116054 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 290-55 chr10 76149039 76149309 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 366413 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 137-7 chr10 120218073 120218186 + 2 NA Intergenic L1M5|LINE|L1 137094 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 337-43 chr10 20663980 20664221 + 2 NA Intergenic Intergenic 112130 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 294-371 chr5 42337729 42337915 + 2 NA Intergenic L1MA4A|LINE|L1 -85617 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 408-5 chr1 56656260 56656523 + 2 NA intron (NM_006252, intron 1 of 8) LTR87|LTR|ERVL? -11073 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 376-79 chr12 17433337 17433680 + 2 NA Intergenic L1ME3A|LINE|L1 155570 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 144-56 chr3 43525557 43525655 + 2 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) 96320 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 330-559 chr9 106485758 106486043 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -115028 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 439-107 chr17 62896751 62897090 + 2 NA Intergenic Intergenic -47295 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 250-388 chr7 3574534 3574720 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 273375 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 260-211 chr2 78692343 78692596 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 146938 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 345-15 chr1 101930596 101930780 + 2 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 58676 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 393-248 chr4 106012141 106012457 + 2 NA intron (NR_125928, intron 3 of 3) intron (NR_125928, intron 3 of 3) 10179 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 348-508 chr8 21587310 21587542 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 201449 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 594-57 chr17 70089007 70089507 + 2 NA intron (NM_001270422, intron 1 of 5) intron (NM_001270422, intron 1 of 5) 14032 NM_001270422 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 159-79 chr6 23206745 23206832 + 2 NA Intergenic Intergenic -488864 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 368-48 chr10 41775148 41775375 + 2 NA Intergenic ALR/Alpha|Satellite|centr 592784 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 373-363 chr6 99420899 99421202 + 2 NA intron (NM_001322406, intron 1 of 12) intron (NM_001322406, intron 1 of 12) -3821 NR_125843 101927365 Hs.535847 NR_125843 LOC101927365 - uncharacterized LOC101927365 ncRNA 295-238 chr2 190703668 190703873 + 2 NA Intergenic Intergenic 44612 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 303-9 chr1 95703974 95704189 + 2 NA Intergenic L1M3e|LINE|L1 193965 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 564-173 chr6 99677066 99677569 + 2 NA Intergenic L2b|LINE|L2 70543 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 531-18 chr10 11356897 11357273 + 2 NA Intergenic AluJr|SINE|Alu -12411 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 342-18 chr1 95746903 95747214 + 2 NA Intergenic L1MC|LINE|L1 236942 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 307-496 chr8 135942192 135942365 + 2 NA Intergenic Intergenic 484822 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 177-83 chr2 191382697 191382859 + 2 NA intron (NM_012223, intron 14 of 28) intron (NM_012223, intron 14 of 28) 137374 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 518-52 chr11 39334112 39334444 + 2 NA Intergenic Intergenic 685420 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 567-86 chr2 103341358 103341828 + 2 NA Intergenic Intergenic -357164 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 587-166 chr8 112627080 112627480 + 2 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -16213 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 196-177 chr4 30447837 30447983 + 2 NA Intergenic L1ME3A|LINE|L1 -272459 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 336-57 chr10 16822584 16822826 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -5251 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 280-228 chr20 18884366 18884553 + 2 NA Intergenic L1MA9|LINE|L1 -54256 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 343-373 chr4 262383 262556 + 2 NA Intergenic AluY|SINE|Alu 43005 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 394-270 chr5 71854746 71855024 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 135610 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 440-69 chr14 78659133 78659412 + 2 NA intron (NR_073547, intron 6 of 20) MLT1B|LTR|ERVL-MaLR 255553 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 235-74 chr12 3526480 3526682 + 2 NA intron (NM_019854, intron 1 of 9) L1MB3|LINE|L1 -33762 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 384-336 chr6 166049026 166049384 + 2 NA Intergenic L1ME1|LINE|L1 -48515 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 305-396 chr4 90565445 90565648 + 2 NA intron (NM_207491, intron 5 of 7) L1MA6|LINE|L1 330515 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 500-149 chr2 126339365 126339759 + 2 NA Intergenic L1PA16|LINE|L1 -221577 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 323-55 chr10 60549401 60549696 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 23408 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 399-262 chr6 18935793 18936175 + 2 NA Intergenic Intergenic 244496 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 295-170 chr16 73393910 73394116 + 2 NA intron (NR_038234, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 7208 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 380-137 chr15 71043132 71043451 + 2 NA intron (NM_017691, intron 15 of 15) intron (NM_017691, intron 15 of 15) -98158 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 451-19 chr1 224698169 224698508 + 2 NA intron (NR_136287, intron 3 of 4) intron (NR_136287, intron 3 of 4) 82021 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 241-304 chr5 63281556 63281736 + 2 NA Intergenic Intergenic 680646 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 425-312 chr8 118685741 118686017 + 2 NA intron (NR_038210, intron 3 of 4) L1MD2|LINE|L1 -63916 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 282-335 chr4 41721414 41721687 + 2 NA Intergenic Intergenic 27420 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 374-139 chr17 14226992 14227302 + 2 NA Intergenic Intergenic 9715 NM_001007530 146822 Hs.447556 NM_001007530 ENSG00000223510 CDRT15 - CMT1A duplicated region transcript 15 protein-coding 369-89 chr12 112656895 112657116 + 2 NA intron (NM_001347952, intron 1 of 21) L1PB4|LINE|L1 38171 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 366-84 chr11 93837023 93837368 + 2 NA intron (NM_001144871, intron 1 of 3) AluSx|SINE|Alu 13423 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 406-203 chr4 34913415 34913733 + 2 NA Intergenic L1PB4|LINE|L1 -643827 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 238-191 chr2 184925158 184925355 + 2 NA intron (NM_194250, intron 2 of 3) L1MA3|LINE|L1 241816 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 335-539 chr8 102104005 102104203 + 2 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 20230 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 512-286 chr8 135602724 135603183 + 2 NA intron (NM_006558, intron 6 of 8) L2c|LINE|L2 145497 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 259-188 chr2 31720790 31720964 + 2 NA Intergenic L1PA8|LINE|L1 83103 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 342-189 chr17 34565817 34566019 + 2 NA Intergenic Intergenic 13451 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 242-266 chr4 80467562 80467765 + 2 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 131943 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 328-501 chr6 53472594 53472869 + 2 NA Intergenic L1MA3|LINE|L1 72370 NM_001498 2729 Hs.654465 NM_001498 ENSG00000001084 GCLC GCL|GCS|GLCL|GLCLC glutamate-cysteine ligase catalytic subunit protein-coding 375-156 chr16 60517263 60517568 + 2 NA Intergenic L1MA4A|LINE|L1 -157622 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 191-75 chr17 30072749 30072907 + 2 NA intron (NM_198529, intron 14 of 22) L1MC4|LINE|L1 -43979 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 349-291 chr20 40977985 40978301 + 2 NA Intergenic L1MA3|LINE|L1 -2570 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 183-41 chr12 127437457 127437632 + 2 NA Intergenic Intergenic -97472 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 137-40 chr19 37576137 37576232 + 2 NA intron (NR_038250, intron 2 of 2) intron (NR_038250, intron 2 of 2) 18562 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 483-248 chr7 57324242 57324511 + 2 NA Intergenic AluY|SINE|Alu -80391 NR_120505 100653233 Hs.127379 NR_120505 ENSG00000260653 LOC100653233 - uncharacterized LOC100653233 ncRNA 358-3 chr1 30293477 30293764 + 2 NA Intergenic L1MC3|LINE|L1 -256008 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 294-237 chr2 139117121 139117370 + 2 NA Intergenic MIRb|SINE|MIR 219921 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 391-60 chr11 60628919 60629150 + 2 NA intron (NR_026946, intron 3 of 6) intron (NR_026946, intron 3 of 6) 13283 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 224-171 chr20 10103787 10103990 + 2 NA intron (NR_040710, intron 3 of 4) intron (NR_040710, intron 3 of 4) 68901 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 353-349 chr3 192745454 192745781 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -18076 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 400-360 chr9 9473186 9473407 + 2 NA intron (NM_002839, intron 8 of 45) L1MA5|LINE|L1 -326096 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 227-292 chr5 99919391 99919564 + 2 NA Intergenic Intergenic 385487 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 349-176 chr15 45916020 45916366 + 2 NA intron (NR_135680, intron 2 of 4) HAL1b|LINE|L1 210998 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 382-342 chr5 135679919 135680123 + 2 NA intron (NM_001349335, intron 3 of 10) L1MA4A|LINE|L1 -26086 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 221-24 chr1 202346648 202346782 + 2 NA Intergenic Intergenic -1984 NM_001331029 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 377-330 chr5 106207751 106208095 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 803091 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 444-64 chr13 92963648 92964022 + 2 NA Intergenic Intergenic -81506 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 179-33 chr17 6633677 6633780 + 2 NA intron (NR_147088, intron 2 of 17) L1ME2z|LINE|L1 6983 NR_147087 9851 Hs.28070 NM_014804 ENSG00000198920 KIAA0753 MNR|OFIP KIAA0753 protein-coding 453-127 chr2 132451866 132452234 + 2 NA intron (NM_001508, intron 1 of 1) L1M7|LINE|L1 18339 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 319-326 chr3 28359929 28360148 + 2 NA intron (NM_001324170, intron 1 of 6) L1MEc|LINE|L1 10889 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 408-354 chr9 33944776 33945173 + 2 NA intron (NR_163243, intron 9 of 24) intron (NR_163243, intron 9 of 24) 7880 NR_003685 100113379 NR_003685 ENSG00000238886 SNORD121A - small nucleolar RNA, C/D box 121A snoRNA 715-17 chr14 63204928 63205590 + 2 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 816 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 214-345 chr8 136418537 136418704 + 2 NA Intergenic Intergenic -112178 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 411-216 chr4 153946433 153946794 + 2 NA Intergenic Intergenic -157530 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 314-327 chr2 239174946 239175168 + 2 NA intron (NM_006037, intron 5 of 26) intron (NM_006037, intron 5 of 26) 20400 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 294-234 chr2 136402899 136403172 + 2 NA Intergenic MIRb|SINE|MIR -284880 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 220-357 chr8 34463513 34463677 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -320326 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 346-130 chr14 43753805 43754049 + 2 NA Intergenic MER57C2|LTR|ERV1 753356 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 280-357 chr6 122780685 122780845 + 2 NA 3' UTR (NM_001319041, exon 2 of 2) 3' UTR (NM_001319041, exon 2 of 2) 1049 NM_001319041 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 204-11 chr1 161724099 161724268 + 2 NA intron (NM_001002901, intron 5 of 7) intron (NM_001002901, intron 5 of 7) 1530 NM_001288830 127943 Hs.517422 NM_001002901 ENSG00000162746 FCRLB FCRL2|FCRLM2|FCRLY|FREB-2|FREB2|FcRY Fc receptor like B protein-coding 329-323 chr20 9421384 9421570 + 2 NA intron (NM_000933, intron 23 of 35) intron (NM_000933, intron 23 of 35) -92881 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 309-530 chr8 43453230 43453426 + 2 NA Intergenic Intergenic 160886 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 222-194 chr2 173760492 173760620 + 2 NA Intergenic LTR78|LTR|ERV1 203324 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 439-189 chr3 118474662 118475011 + 2 NA Intergenic Intergenic -166932 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 319-190 chr17 60321902 60322164 + 2 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) 70100 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 363-236 chr2 174965914 174966117 + 2 NA intron (NR_038133, intron 1 of 11) intron (NR_038133, intron 1 of 11) 39238 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 443-156 chr2 179311672 179311958 + 2 NA Intergenic Intergenic -46983 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 523-72 chr13 97076261 97076631 + 2 NA Intergenic HAL1ME|LINE|L1 -81716 NM_001346195 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 363-211 chr2 63506937 63507196 + 2 NA intron (NR_148705, intron 1 of 16) HAL1|LINE|L1 -69059 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 417-191 chr4 30956544 30956902 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -214421 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 252-182 chr2 40774187 40774372 + 2 NA Intergenic Intergenic -261844 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 266-192 chr2 126949425 126949617 + 2 NA Intergenic L1ME1|LINE|L1 50631 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 224-343 chr8 140039917 140040081 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 60536 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 314-48 chr1 232567312 232567588 + 2 NA Intergenic Intergenic -51842 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 274-8 chr1 82849712 82849891 + 2 NA Intergenic Intergenic -53382 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 351-462 chr7 154398423 154398762 + 2 NA intron (NR_157196, intron 1 of 25) intron (NR_157196, intron 1 of 25) 93433 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 299-69 chr10 123328058 123328316 + 2 NA Intergenic Intergenic 173785 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 352-376 chr4 90797128 90797442 + 2 NA intron (NM_001145065, intron 7 of 10) L1PA13|LINE|L1 562254 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 555-209 chr8 123871264 123871606 + 2 NA intron (NM_001039112, intron 1 of 40) L1MC3|LINE|L1 19448 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 379-209 chr3 8304657 8304876 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 196892 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 173-37 chr14 79091635 79091767 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -108281 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 559-47 chr14 61100873 61101261 + 2 NA Intergenic Intergenic -119377 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 391-113 chr14 79630630 79630940 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 351405 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 362-107 chr12 14941353 14941581 + 2 NA TTS (NM_001321423) TTS (NM_001321423) -2930 NM_152321 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 284-123 chr14 78990556 78990715 + 2 NA intron (NR_073547, intron 14 of 20) AluSx3|SINE|Alu -209347 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 475-243 chr6 105059566 105059883 + 2 NA intron (NM_001004317, intron 3 of 3) intron (NM_001004317, intron 3 of 3) 76622 NM_147147 11149 Hs.221660 NM_007073 ENSG00000112276 BVES CARICK|HBVES|LGMD2X|LGMDR25|POP1|POPDC1 blood vessel epicardial substance protein-coding 605-48 chr2 30886917 30887365 + 2 NA Intergenic L1MB5|LINE|L1 -79695 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 457-216 chr6 56942950 56943373 + 2 NA intron (NM_001144769, intron 2 of 96) Charlie29a|DNA|hAT-Charlie 11669 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 259-118 chr14 59537327 59537570 + 2 NA intron (NM_001164399, intron 13 of 19) intron (NM_001164399, intron 13 of 19) 39364 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 255-200 chr2 81003880 81004085 + 2 NA Intergenic L1M1|LINE|L1 462964 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 361-373 chr5 137565600 137565935 + 2 NA Intergenic Intergenic -66441 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 235-341 chr7 104572323 104572500 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 231681 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 448-289 chr8 123584887 123585198 + 2 NA Intergenic Intergenic -43836 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 220-198 chr2 239045270 239045417 + 2 NA Intergenic Intergenic 23571 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 318-276 chr2 97976506 97976706 + 2 NA intron (NM_015348, intron 1 of 40) L1ME1|LINE|L1 19342 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 459-272 chr7 13583189 13583440 + 2 NA Intergenic Intergenic 403200 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 116-26 chr3 33825771 33825844 + 2 NA intron (NM_001256192, intron 5 of 5) L2a|LINE|L2 27177 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 455-253 chr7 7387120 7387423 + 2 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 132117 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 120-50 chr8 89470219 89470290 + 2 NA Intergenic Intergenic 287457 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 293-112 chr14 43001895 43002105 + 2 NA Intergenic LTR27D|LTR|ERV1 1395144 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 337-262 chr2 113940100 113940416 + 2 NA intron (NM_005721, intron 7 of 11) intron (NM_005721, intron 7 of 11) -29064 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 491-190 chr4 118342886 118343369 + 2 NA intron (NM_003619, intron 1 of 12) AluJr|SINE|Alu 9876 NM_003619 8492 Hs.445857 NM_003619 ENSG00000164099 PRSS12 BSSP-3|BSSP3|MRT1 serine protease 12 protein-coding 211-307 chr8 117239470 117239647 + 2 NA Intergenic Intergenic 104563 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 305-547 chr8 121760037 121760242 + 2 NA Intergenic Intergenic -118699 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 293-14 chr1 152923778 152923975 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 15331 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 360-93 chr12 75758589 75758878 + 2 NA Intergenic L1ME4a|LINE|L1 -247124 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 328-593 chr8 139570965 139571223 + 2 NA Intergenic L1M4|LINE|L1 132029 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 413-4 chr1 40605834 40606062 + 2 NA Intergenic Intergenic 59734 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 356-280 chr20 2025752 2026070 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -31626 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 342-137 chr14 21284030 21284325 + 2 NA Intergenic Intergenic -3800 NM_020366 57096 Hs.126035 NM_020366 ENSG00000092200 RPGRIP1 CORD13|LCA6|RGI1|RGRIP|RPGRIP|RPGRIP1d RPGR interacting protein 1 protein-coding 333-115 chr12 46315855 46316156 + 2 NA Intergenic L1MB3|LINE|L1 -46962 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 169-71 chr22 27733916 27734080 + 2 NA Intergenic Intergenic 67758 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 320-448 chr5 91650342 91650631 + 2 NA Intergenic Intergenic -267169 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 337-392 chr4 45301202 45301524 + 2 NA Intergenic L1P4|LINE|L1 -574729 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 257-359 chr6 77276160 77276369 + 2 NA Intergenic Intergenic 187758 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 282-425 chr7 52211086 52211299 + 2 NA Intergenic L1MDa|LINE|L1 -817936 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 309-27 chr1 209376999 209377246 + 2 NA intron (NR_146491, intron 2 of 2) intron (NR_146491, intron 2 of 2) 5067 NR_146491 101929476 Hs.568721 NR_146491 LINC01698 - long intergenic non-protein coding RNA 1698 ncRNA 569-191 chrX 17191236 17191582 + 2 NA Intergenic L1ME1|LINE|L1 -183791 NM_198270 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 587-46 chr14 66135919 66136422 + 2 NA Intergenic Intergenic -350201 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 663-125 chrX 99145963 99146594 + 2 NA Intergenic L1M2|LINE|L1 1263995 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 232-12 chr1 112885069 112885197 + 2 NA Intergenic Intergenic 3083 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 487-204 chr4 58013093 58013525 + 2 NA Intergenic L1MB3|LINE|L1 523019 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 231-25 chr1 244512065 244512279 + 2 NA intron (NM_001130957, intron 7 of 21) L1MA4|LINE|L1 50801 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 258-317 chr5 40924884 40925045 + 2 NA intron (NM_000587, intron 1 of 17) MSTA-int|LTR|ERVL-MaLR 15467 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 236-205 chr22 19304037 19304206 + 2 NA Intergenic AluJo|SINE|Alu -12402 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 568-146 chr4 42474933 42475345 + 2 NA intron (NM_001105529, intron 24 of 35) MIR|SINE|MIR 77651 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 314-331 chr20 1083474 1083696 + 2 NA Intergenic MER57E1|LTR|ERV1 -29644 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 234-335 chr6 20947593 20947736 + 2 NA intron (NM_017774, intron 9 of 15) MER47A|DNA|TcMar-Tigger 413207 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 293-97 chr12 128537581 128537740 + 2 NA intron (NM_001136103, intron 2 of 8) L1MD2|LINE|L1 243568 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 531-73 chr15 70200275 70200756 + 2 NA Intergenic Intergenic -102598 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 534-12 chr1 173299572 173300005 + 2 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -92457 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 284-373 chr7 26957180 26957424 + 2 NA Intergenic Intergenic -92712 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 156-88 chr6 45339027 45339123 + 2 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 10745 NM_001024630 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 287-204 chr2 119911592 119911823 + 2 NA intron (NM_002830, intron 10 of 26) L1ME1|LINE|L1 -101370 NM_001184938 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 228-262 chr5 25469458 25469613 + 2 NA Intergenic Intergenic 278582 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 361-298 chr3 114720697 114720890 + 2 NA intron (NM_001348801, intron 4 of 11) intron (NM_001348801, intron 4 of 11) 22732 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 551-133 chr4 45601978 45602387 + 2 NA Intergenic AluSx1|SINE|Alu 521872 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 599-5 chr1 162524115 162524608 + 2 NA 3' UTR (NM_001184763, exon 8 of 8) 3' UTR (NM_001184763, exon 8 of 8) 26543 NM_175866 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 455-13 chr1 150804139 150804437 + 2 NA intron (NM_000396, intron 4 of 7) intron (NM_000396, intron 4 of 7) 3972 NM_000396 1513 Hs.632466 NM_000396 ENSG00000143387 CTSK CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD cathepsin K protein-coding 483-105 chr2 17954650 17954967 + 2 NA Intergenic Intergenic 76141 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 710-70 chr4 67791551 67792105 + 2 NA Intergenic L1MA8|LINE|L1 -35742 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 268-198 chr2 83614945 83615153 + 2 NA Intergenic MIRb|SINE|MIR 92235 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 126-24 chr14 78864627 78864690 + 2 NA intron (NM_004796, intron 7 of 16) MER39|LTR|ERV1 -335324 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 267-443 chr9 27258040 27258222 + 2 NA intron (NR_026679, intron 15 of 16) intron (NR_026679, intron 15 of 16) 24662 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 284-24 chr1 232622258 232622429 + 2 NA Intergenic Intergenic -95728 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 296-285 chr3 21315480 21315758 + 2 NA Intergenic Intergenic -90107 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 174-97 chr3 167207043 167207189 + 2 NA Intergenic L1M3|LINE|L1 173167 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 326-398 chr5 22580632 22580841 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 272608 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 310-401 chr5 57685004 57685205 + 2 NA Intergenic MLT2D|LTR|ERVL 34444 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 381-255 chr3 83742712 83742950 + 2 NA Intergenic Intergenic 1126744 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 229-69 chr11 97000066 97000268 + 2 NA Intergenic Intergenic 491742 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 251-33 chr10 65019678 65019820 + 2 NA Intergenic L1PA15|LINE|L1 -95231 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 371-147 chr18 6581856 6582071 + 2 NA intron (NR_120518, intron 3 of 5) L1PA16|LINE|L1 70547 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 266-322 chr5 38269126 38269319 + 2 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) 10663 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 327-452 chr7 33209561 33209860 + 2 NA intron (NM_198428, intron 5 of 22) L1MA3|LINE|L1 80146 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 237-95 chr14 26129720 26129924 + 2 NA Intergenic Intergenic 423608 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 410-99 chr16 11416588 11416973 + 2 NA intron (NM_001370704, intron 43 of 66) L2a|LINE|L2 -48480 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 337-371 chr3 160588836 160589096 + 2 NA Intergenic L1M1|LINE|L1 -23395 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 236-212 chr3 2745414 2745573 + 2 NA intron (NM_175607, intron 5 of 24) intron (NM_175607, intron 5 of 24) -146722 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 327-526 chr9 91818515 91818819 + 2 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 131561 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 420-55 chr11 112697516 112697779 + 2 NA Intergenic Intergenic -141845 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 503-70 chr12 42902605 42902899 + 2 NA Intergenic AluSz6|SINE|Alu 210536 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 399-111 chr16 73249033 73249422 + 2 NA Intergenic Intergenic -104780 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 554-78 chr14 74061484 74061780 + 2 NA intron (NM_001278593, intron 11 of 11) intron (NM_001278593, intron 11 of 11) 22821 NM_001278593 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 255-429 chr8 106925902 106926061 + 2 NA Intergenic Intergenic -155737 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 517-228 chr5 164408107 164408570 + 2 NA Intergenic Intergenic 59064 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 277-251 chr3 43170470 43170669 + 2 NA Intergenic Intergenic -64490 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 295-126 chr14 46960496 46960692 + 2 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) -308813 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 359-272 chr2 234537973 234538316 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -41063 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 446-190 chr3 95522436 95522868 + 2 NA Intergenic Intergenic 160541 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 434-155 chr2 136446215 136446515 + 2 NA Intergenic L2c|LINE|L2 -319180 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 262-76 chr11 42659533 42659699 + 2 NA Intergenic L1MA9|LINE|L1 -405926 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 147-69 chr5 11019850 11019982 + 2 NA intron (NM_001288715, intron 16 of 20) intron (NM_001288715, intron 16 of 20) -258682 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 220-291 chr5 92292944 92293162 + 2 NA Intergenic L1MC2|LINE|L1 -909736 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 456-209 chr3 117577041 117577292 + 2 NA Intergenic Intergenic 113759 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 288-452 chr8 126277916 126278144 + 2 NA Intergenic Intergenic -47465 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 308-525 chr8 136313503 136313657 + 2 NA Intergenic Intergenic -217218 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 345-186 chr16 52978443 52978619 + 2 NA Intergenic L1PA10|LINE|L1 74342 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 308-214 chr2 375105 375327 + 2 NA Intergenic Intergenic 58932 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 256-239 chr21 30415726 30415925 + 2 NA Intergenic PABL_A-int|LTR|ERV1 10101 NM_181622 337960 Hs.553687 NM_181622 ENSG00000240432 KRTAP13-3 KAP13.3 keratin associated protein 13-3 protein-coding 381-379 chr8 77195459 77195695 + 2 NA Intergenic L1PA15|LINE|L1 -194533 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 221-324 chrX 55925707 55925862 + 2 NA intron (NM_001324105, intron 1 of 5) intron (NM_001324105, intron 1 of 5) 17499 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 121-37 chr22 34823138 34823256 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 174719 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 499-272 chr8 130396170 130396552 + 2 NA intron (NM_001247996, intron 2 of 30) L2b|LINE|L2 47299 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 292-247 chr2 225102623 225102817 + 2 NA Intergenic Intergenic -60252 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 1232-9 chr8 135149354 135150156 + 2 NA Intergenic Intergenic -84376 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 402-254 chr4 165791008 165791324 + 2 NA Intergenic L1ME3F|LINE|L1 -48095 NR_121677 101928131 Hs.406479 NR_121677 LOC101928131 - uncharacterized LOC101928131 ncRNA 347-314 chr3 110658996 110659251 + 2 NA Intergenic Intergenic 410836 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 658-34 chr13 55487803 55488276 + 2 NA Intergenic L1MA8|LINE|L1 313585 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 354-66 chr10 127660486 127660750 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -76567 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 377-118 chr14 47823086 47823388 + 2 NA Intergenic Intergenic -28223 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 357-150 chr16 82978302 82978517 + 2 NA intron (NR_110937, intron 1 of 2) THE1C-int|LTR|ERVL-MaLR 11889 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 866-25 chr18 66319345 66319887 + 2 NA Intergenic L1MEj|LINE|L1 284474 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 324-566 chr9 79061394 79061645 + 2 NA Intergenic MIRb|SINE|MIR 84147 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 256-285 chr4 32807175 32807369 + 2 NA Intergenic L1MB5|LINE|L1 456234 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 692-69 chr3 167098267 167098786 + 2 NA Intergenic Intergenic 199843 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 216-19 chr1 112227421 112227561 + 2 NA Intergenic L1MA4|LINE|L1 -168723 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 340-464 chr5 137439086 137439321 + 2 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 60123 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 359-269 chr2 215631283 215631574 + 2 NA intron (NR_037195, intron 5 of 9) L1PA15|LINE|L1 -86615 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 420-276 chr7 159263655 159264009 + 2 NA Intergenic HAL1b|LINE|L1 -118875 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 222-189 chr2 140930467 140930657 + 2 NA intron (NM_018557, intron 20 of 90) intron (NM_018557, intron 20 of 90) -343877 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 222-201 chr2 212396254 212396409 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 30029 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 281-182 chr19 9550899 9551089 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 12328 NR_134921 101928238 Hs.324978 NR_134920 ENSG00000278611 ZNF426-DT - ZNF426 divergent transcript ncRNA 212-23 chr1 233950970 233951143 + 2 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 46380 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 118-13 chr11 127786165 127786234 + 2 NA Intergenic HAL1|LINE|L1 -422567 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 238-418 chr9 78646767 78646920 + 2 NA Intergenic L1MEd|LINE|L1 349718 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 319-15 chr1 105400938 105401248 + 2 NA Intergenic Intergenic 217842 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 243-210 chr2 79147314 79147507 + 2 NA Intergenic L1MA9|LINE|L1 -8983 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 411-223 chr5 23953053 23953431 + 2 NA intron (NR_131245, intron 1 of 4) L1PREC2|LINE|L1 1894 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 136-82 chr7 136626339 136626454 + 2 NA Intergenic Intergenic -242256 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 225-69 chr12 18517172 18517394 + 2 NA intron (NM_001288774, intron 24 of 32) intron (NM_001288774, intron 24 of 32) 220226 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 338-28 chr1 188485576 188485824 + 2 NA Intergenic Intergenic 1042072 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 293-73 chr11 134437074 134437273 + 2 NA intron (NR_033852, intron 1 of 5) intron (NR_033852, intron 1 of 5) 691 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 154-9 chr1 240068207 240068294 + 2 NA Intergenic Intergenic -23633 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 326-391 chr5 4836856 4837139 + 2 NA Intergenic Intergenic 63516 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 132-7 chr10 5220547 5220652 + 2 NA Intergenic (AATAATA)n|Simple_repeat|Simple_repeat 23762 NM_001818 1109 Hs.567245 NM_001818 ENSG00000198610 AKR1C4 3-alpha-HSD|C11|CDR|CHDR|DD-4|DD4|HAKRA aldo-keto reductase family 1 member C4 protein-coding 184-16 chr1 179594919 179595083 + 2 NA intron (NM_001199091, intron 3 of 16) intron (NM_001199091, intron 3 of 16) 3169 NM_173533 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 631-125 chr8 124014586 124015170 + 2 NA intron (NR_040044, intron 2 of 5) MLT1F2|LTR|ERVL-MaLR 25904 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 532-281 chr8 139185198 139185568 + 2 NA Intergenic L1MCb|LINE|L1 -271342 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 303-107 chr13 58186871 58187034 + 2 NA intron (NR_120416, intron 1 of 2) intron (NR_120416, intron 1 of 2) 21125 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 365-306 chr5 4728136 4728381 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -45223 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 354-50 chr10 56261899 56262153 + 2 NA Intergenic AluJb|SINE|Alu 99233 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 307-221 chr19 56016634 56016914 + 2 NA intron (NM_153447, intron 4 of 14) L1MB7|LINE|L1 17048 NM_153447 126206 Hs.356872 NM_153447 ENSG00000171487 NLRP5 CLR19.8|MATER|NALP5|PAN11|PYPAF8 NLR family pyrin domain containing 5 protein-coding 312-138 chr14 45535598 45535792 + 2 NA Intergenic L1PA10|LINE|L1 179907 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 156-41 chr16 72685942 72686030 + 2 NA Intergenic L1MB2|LINE|L1 -21016 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 328-242 chr2 4412528 4412847 + 2 NA Intergenic Intergenic 243535 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 548-148 chr3 87464872 87465303 + 2 NA Intergenic L1MA3|LINE|L1 -188503 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 343-335 chr3 45147465 45147646 + 2 NA Intergenic L2b|LINE|L2 -1133 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 290-89 chr11 115789398 115789650 + 2 NA Intergenic Intergenic -29324 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 506-61 chr11 100086248 100086617 + 2 NA intron (NM_001243270, intron 12 of 23) L1M6|LINE|L1 530287 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 269-123 chr14 80804273 80804520 + 2 NA intron (NM_152446, intron 13 of 24) intron (NM_152446, intron 13 of 24) 137342 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 386-255 chr4 30234883 30235266 + 2 NA Intergenic L2a|LINE|L2 -485295 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 503-47 chr11 16288888 16289354 + 2 NA intron (NM_033326, intron 3 of 15) intron (NM_033326, intron 3 of 15) 67425 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 211-143 chr2 81625950 81626093 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -159075 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 288-115 chr14 50371260 50371442 + 2 NA intron (NM_001282236, intron 2 of 8) L1MA7|LINE|L1 25530 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 271-245 chr22 17175673 17175938 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -10518 NM_017829 27440 Hs.26890 NM_017829 ENSG00000069998 HDHD5 CECR5 haloacid dehalogenase like hydrolase domain containing 5 protein-coding 245-238 chr3 112544144 112544339 + 2 NA intron (NM_001278712, intron 5 of 10) intron (NM_001278712, intron 5 of 10) -17079 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 194-43 chr12 83612461 83612626 + 2 NA Intergenic MER34|LTR|ERV1 925388 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 195-266 chrX 87777973 87778117 + 2 NA Intergenic Intergenic 260243 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 383-242 chr3 27747128 27747425 + 2 NA Intergenic MIR|SINE|MIR -24561 NM_001278183 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 360-177 chr18 1902360 1902669 + 2 NA Intergenic L1M5|LINE|L1 -542885 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 700-2 chr1 17150981 17151584 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -31831 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 208-54 chr12 24464919 24465051 + 2 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 97506 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 218-96 chr14 65973053 65973222 + 2 NA Intergenic (TCA)n|Simple_repeat|Simple_repeat 502035 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 477-273 chr8 61064186 61064519 + 2 NA Intergenic L1MB4|LINE|L1 -96604 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 309-44 chr10 37510102 37510270 + 2 NA Intergenic Intergenic 92745 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 291-436 chr8 51777076 51777250 + 2 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 32282 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 494-260 chr6 164390555 164391012 + 2 NA Intergenic Intergenic 431280 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 372-45 chr10 57771302 57771514 + 2 NA Intergenic L1PA16|LINE|L1 -466849 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 246-85 chr12 10414868 10415042 + 2 NA TTS (NM_007333) TTS (NM_007333) -4809 NM_001199805 100528032 Hs.387787 NM_001199805 KLRC4-KLRK1 - KLRC4-KLRK1 readthrough protein-coding 218-116 chr16 47789747 47789914 + 2 NA Intergenic L1MA9|LINE|L1 -68751 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 577-71 chr16 59510528 59510931 + 2 NA Intergenic Intergenic 244462 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 444-85 chr16 47820149 47820500 + 2 NA Intergenic Intergenic -38257 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 251-21 chr1 211172539 211172736 + 2 NA Intergenic L1MEc|LINE|L1 -38489 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 458-264 chr8 113070087 113070500 + 2 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 306859 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 228-31 chr10 16286851 16287006 + 2 NA Intergenic L1MB8|LINE|L1 -150015 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 363-404 chr7 19600211 19600568 + 2 NA Intergenic L1PA16|LINE|L1 105047 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 267-360 chr5 166222332 166222597 + 2 NA Intergenic Intergenic 703906 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 336-162 chr14 46536273 46536471 + 2 NA Intergenic Intergenic 65013 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 214-152 chr2 22418074 22418247 + 2 NA Intergenic Intergenic -118319 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 326-452 chr6 50704912 50705183 + 2 NA Intergenic Intergenic -8497 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 449-301 chrX 127617836 127618180 + 2 NA Intergenic L1MA5|LINE|L1 434395 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 337-579 chr9 71323158 71323396 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 123694 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 739-14 chr12 40838824 40839359 + 2 NA intron (NM_001256064, intron 1 of 15) L1M2|LINE|L1 11153 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 498-63 chr12 180690 181069 + 2 NA Intergenic Intergenic -22766 NR_120475 101929384 Hs.569138 NR_120475 ENSG00000256577 LOC101929384 - uncharacterized LOC101929384 ncRNA 402-343 chr8 89065443 89065782 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 692099 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 175-24 chr10 51583426 51583527 + 2 NA intron (NM_001098512, intron 3 of 17) L2|LINE|L2 116119 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 219-70 chr12 23297018 23297168 + 2 NA Intergenic L2c|LINE|L2 121457 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 288-410 chr7 54434611 54434852 + 2 NA Intergenic L2c|LINE|L2 104034 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 212-258 chr5 81418021 81418198 + 2 NA 3' UTR (NM_001256732, exon 17 of 17) 3' UTR (NM_001256732, exon 17 of 17) -23975 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 309-352 chr3 81057888 81058174 + 2 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 64163 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 329-420 chr4 107306126 107306442 + 2 NA Intergenic Intergenic -269971 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 218-355 chr9 103697827 103697987 + 2 NA Intergenic LTR78|LTR|ERV1 -301802 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 310-123 chr14 24927314 24927574 + 2 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 121556 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 501-262 chr8 91179774 91180186 + 2 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -25505 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 690-28 chr12 126132064 126132536 + 2 NA Intergenic L1PA15|LINE|L1 36308 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 238-18 chr1 165797804 165797962 + 2 NA Intergenic (AGA)n|Simple_repeat|Simple_repeat 28954 NR_125374 100147773 Hs.633824 NR_125374 TMCO1-AS1 - TMCO1 antisense RNA 1 ncRNA 237-102 chr14 51081835 51082035 + 2 NA intron (NM_015163, intron 1 of 9) MER21C|LTR|ERVL 13769 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 318-377 chr3 180504804 180505017 + 2 NA Intergenic Intergenic 90737 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 500-213 chr4 111153440 111153782 + 2 NA Intergenic L1MCb|LINE|L1 -292964 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 128-75 chr8 46363652 46363743 + 2 NA Intergenic ALR/Alpha|Satellite|centr 253946 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 308-234 chr2 83970194 83970372 + 2 NA Intergenic Intergenic -320399 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 337-359 chr3 99109736 99110032 + 2 NA Intergenic LTR78B|LTR|ERV1 -208189 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 504-32 chr10 119739574 119739941 + 2 NA intron (NM_014937, intron 1 of 19) AluJb|SINE|Alu 13707 NM_014937 22876 Hs.369755 NM_014937 ENSG00000198825 INPP5F MSTP007|MSTPO47|SAC2|hSAC2 inositol polyphosphate-5-phosphatase F protein-coding 379-224 chr3 160819292 160819591 + 2 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) -22708 NM_001317911 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 543-127 chr2 104238696 104239097 + 2 NA Intergenic Intergenic 169436 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 315-353 chr4 150191790 150192056 + 2 NA intron (NM_001040260, intron 2 of 15) intron (NM_001040260, intron 2 of 15) 113478 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 212-21 chr1 202748131 202748307 + 2 NA intron (NM_001314042, intron 15 of 27) L1MC|LINE|L1 -37765 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 143-3 chr1 164451454 164451581 + 2 NA Intergenic Intergenic -107843 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 283-331 chr4 93624156 93624363 + 2 NA intron (NM_001286838, intron 12 of 14) L1M5|LINE|L1 -204494 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 374-375 chr8 20844838 20845040 + 2 NA Intergenic Intergenic -108694 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 233-145 chr18 78890383 78890544 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -89812 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 602-92 chr4 42214390 42214909 + 2 NA Intergenic AluSx|SINE|Alu -61994 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 227-338 chr7 27500602 27500797 + 2 NA Intergenic Intergenic -115275 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 357-117 chr14 68660214 68660483 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -31561 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 279-221 chr20 41528366 41528544 + 2 NA intron (NM_032221, intron 3 of 36) intron (NM_032221, intron 3 of 36) 89922 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 343-311 chr21 19585761 19586058 + 2 NA Intergenic L1MC1|LINE|L1 313846 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 321-502 chr6 104663329 104663614 + 2 NA Intergenic L1PB1|LINE|L1 196075 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 539-160 chr4 177297328 177297791 + 2 NA Intergenic LTR8B|LTR|ERV1 -12315 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 552-226 chr9 97849676 97850104 + 2 NA intron (NR_147055, intron 1 of 10) intron (NR_147055, intron 1 of 10) 3190 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 326-67 chr10 56185494 56185708 + 2 NA Intergenic L1MD2|LINE|L1 175658 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 299-447 chr8 79035260 79035483 + 2 NA Intergenic L1PA11|LINE|L1 197842 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 119-24 chr18 35889022 35889085 + 2 NA Intergenic Intergenic 15873 NR_029616 406963 NR_029616 ENSG00000207797 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 239-318 chr5 83338786 83338992 + 2 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -132785 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 301-369 chr5 122862717 122862898 + 2 NA intron (NM_014035, intron 1 of 6) L1ME3G|LINE|L1 17194 NM_014035 28966 Hs.483200 NM_014035 ENSG00000064652 SNX24 PRO1284|SBBI31 sorting nexin 24 protein-coding 203-112 chr2 71960358 71960516 + 2 NA Intergenic L1MC1|LINE|L1 187425 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 456-324 chr8 120600079 120600400 + 2 NA intron (NM_021021, intron 3 of 6) MLT1G1|LTR|ERVL-MaLR 154820 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 774-2 chr1 172198562 172199064 + 2 NA intron (NR_146559, intron 15 of 20) L1PA14|LINE|L1 -53978 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 330-350 chr3 89416587 89416874 + 2 NA intron (NM_005233, intron 10 of 16) intron (NM_005233, intron 10 of 16) 309109 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 416-84 chr12 9757872 9758215 + 2 NA intron (NM_001781, intron 1 of 4) intron (NM_001781, intron 1 of 4) 2858 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 273-36 chr1 227622894 227623149 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 59465 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 373-161 chr17 69637357 69637727 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 43555 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 273-80 chr11 56178850 56179033 + 2 NA Intergenic Intergenic 2323 NM_001005492 282775 Hs.537145 NM_001005492 ENSG00000174957 OR5J2 OR11-266 olfactory receptor family 5 subfamily J member 2 protein-coding 261-78 chr12 60260275 60260484 + 2 NA Intergenic MIRb|SINE|MIR 571009 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 137-53 chr20 6114801 6114926 + 2 NA intron (NM_017671, intron 3 of 14) L2a|LINE|L2 8681 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 287-142 chr14 98319503 98319668 + 2 NA Intergenic L1ME2|LINE|L1 -341461 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 579-175 chr8 125796239 125796608 + 2 NA Intergenic LTR2752|LTR|ERV1 154774 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 285-360 chr5 180265767 180265991 + 2 NA intron (NM_001364608, intron 4 of 12) L1PB|LINE|L1 14729 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 247-25 chr1 197984740 197984983 + 2 NA Intergenic Intergenic 67489 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 352-563 chr9 83477691 83478002 + 2 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) -10104 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 516-107 chr18 62932352 62932849 + 2 NA intron (NM_194449, intron 10 of 16) L1PA17|LINE|L1 217059 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 179-69 chr3 87147415 87147548 + 2 NA intron (NR_104153, intron 1 of 2) MER51A|LTR|ERV1 58201 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 347-224 chr2 78172953 78173262 + 2 NA intron (NR_110288, intron 1 of 3) L1MA4A|LINE|L1 84377 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 667-100 chr6 123531303 123531803 + 2 NA intron (NM_001256020, intron 4 of 8) intron (NM_001256020, intron 4 of 8) 91949 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 347-29 chr1 201240265 201240524 + 2 NA Intergenic L1MEc|LINE|L1 -43058 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 517-48 chr11 87875550 87875961 + 2 NA Intergenic L1M5|LINE|L1 -156344 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 300-500 chrX 125664626 125664820 + 2 NA Intergenic L1PA15|LINE|L1 344852 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 345-370 chr3 186287535 186287821 + 2 NA intron (NM_001346, intron 6 of 24) intron (NM_001346, intron 6 of 24) 74556 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 384-23 chr1 193902954 193903286 + 2 NA Intergenic Intergenic 598375 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 935-35 chr6 123209961 123210547 + 2 NA Intergenic L1ME3|LINE|L1 214019 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 312-462 chr6 147248507 147248763 + 2 NA intron (NM_139244, intron 4 of 25) L1M5|LINE|L1 -44021 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 544-84 chr16 47908310 47908691 + 2 NA TTS (NR_110650) TTS (NR_110650) -21370 NR_110649 100507534 Hs.407601 NR_110649 ENSG00000261325 LINC02192 - long intergenic non-protein coding RNA 2192 ncRNA 432-285 chr8 65379192 65379496 + 2 NA Intergenic Intergenic 183322 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 316-289 chr2 128916707 128916916 + 2 NA Intergenic L1M4|LINE|L1 52211 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 564-40 chr12 15238202 15238606 + 2 NA Intergenic Intergenic -16987 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 295-200 chr2 22688757 22689024 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 152411 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 298-366 chr5 64549103 64549342 + 2 NA intron (NM_001029875, intron 2 of 5) MLT1A-int|LTR|ERVL-MaLR -26428 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 247-60 chr11 80495015 80495203 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 267694 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 263-126 chr15_KI270905v1_alt 1838239 1838419 + 2 NA intron (NM_015307, intron 1 of 10) MER58A|DNA|hAT-Charlie 16575 NM_015307 23359 Hs.383564 NM_015307 ENSG00000104059 FAM189A1 TMEM228 family with sequence similarity 189 member A1 protein-coding 391-47 chr10 109275110 109275305 + 2 NA Intergenic L2c|LINE|L2 648039 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 379-199 chr21 17103513 17103773 + 2 NA Intergenic Intergenic -335247 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 248-203 chr2 124526886 124527089 + 2 NA intron (NM_130773, intron 9 of 23) intron (NM_130773, intron 9 of 23) 501700 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 657-67 chr3 172865312 172865760 + 2 NA Intergenic Intergenic 114534 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 303-250 chr20 39214549 39214827 + 2 NA non-coding (NR_027124, exon 4 of 4) non-coding (NR_027124, exon 4 of 4) 10060 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 209-314 chr8 58231069 58231237 + 2 NA Intergenic Intergenic 40948 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 163-3 chr1 78331273 78331397 + 2 NA intron (NR_027310, intron 3 of 5) intron (NR_027310, intron 3 of 5) 101736 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 354-447 chr7 136756675 136756997 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -111816 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 567-178 chr8 59904876 59905294 + 2 NA Intergenic L1PA11|LINE|L1 376315 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 489-49 chr12 7248347 7248687 + 2 NA Intergenic AluJb|SINE|Alu -55815 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 264-69 chr10 131706479 131706660 + 2 NA Intergenic Intergenic 83630 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 754-9 chr10 117144235 117144835 + 2 NA Intergenic MIR|SINE|MIR -6265 NM_001112704 11023 Hs.441536 NM_199131 ENSG00000148704 VAX1 MCOPS11 ventral anterior homeobox 1 protein-coding 225-73 chr12 61215044 61215209 + 2 NA Intergenic Intergenic 977713 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 469-3 chr1 41204838 41205199 + 2 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) 37288 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 281-23 chr1 203801843 203802055 + 2 NA TTS (NM_001174108) TTS (NM_001174108) 4426 NM_001174108 100381270 NM_001174108 ENSG00000257315 ZBED6 MGR zinc finger BED-type containing 6 protein-coding 231-103 chr14 83820417 83820585 + 2 NA Intergenic AluSx|SINE|Alu 1177869 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 349-47 chr10 17321120 17321323 + 2 NA non-coding (NR_144322, exon 7 of 7) non-coding (NR_144322, exon 7 of 7) -65715 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 268-266 chr4 165316 165498 + 2 NA intron (NR_110527, intron 3 of 4) intron (NR_110527, intron 3 of 4) 37286 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 478-91 chr14 88994183 88994503 + 2 NA Intergenic Intergenic 169692 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 378-238 chr2 113990492 113990793 + 2 NA intron (NR_148508, intron 1 of 1) intron (NR_148508, intron 1 of 1) -10658 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 826-53 chr5 125949518 125950071 + 2 NA Intergenic MIRb|SINE|MIR -229783 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 288-185 chr2 57392918 57393087 + 2 NA Intergenic L1ME2|LINE|L1 -514649 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 185-185 chr6 111119186 111119324 + 2 NA intron (NM_018593, intron 1 of 5) intron (NM_018593, intron 1 of 5) 5421 NR_145796 109623478 NR_145796 SNORD166 - small nucleolar RNA, C/D box 166 snoRNA 339-15 chr1 71781495 71781732 + 2 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) 55399 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 345-495 chr7 44478905 44479232 + 2 NA intron (NM_015332, intron 2 of 5) THE1C|LTR|ERVL-MaLR 11590 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 163-88 chr3 143774637 143774747 + 2 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 73776 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 301-13 chr1 152829128 152829287 + 2 NA Intergenic Intergenic 1734 NM_178348 353131 Hs.534645 NM_178348 ENSG00000186844 LCE1A LEP1 late cornified envelope 1A protein-coding 227-70 chr11 91547948 91548130 + 2 NA Intergenic Intergenic -676995 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 458-2 chr1 64770998 64771291 + 2 NA intron (NM_001366165, intron 2 of 11) L1MEc|LINE|L1 26069 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 359-33 chr1 185261447 185261655 + 2 NA intron (NM_017673, intron 16 of 18) L1MB3|LINE|L1 55692 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 459-222 chr4 126129650 126129940 + 2 NA Intergenic Intergenic 622536 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 335-288 chr20 4769894 4770108 + 2 NA Intergenic Intergenic -29333 NR_024268 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 331-464 chr6 92879064 92879328 + 2 NA Intergenic Intergenic 540363 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 439-177 chr3 25969752 25970165 + 2 NA Intergenic Intergenic -96263 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 578-188 chr8 139509253 139509687 + 2 NA Intergenic Intergenic 193653 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 347-277 chr20 60913268 60913570 + 2 NA Intergenic Intergenic -165645 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 839-12 chr13 87019854 87020361 + 2 NA Intergenic AluSg|SINE|Alu 108187 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 509-220 chr6 124663259 124663655 + 2 NA intron (NM_001040214, intron 4 of 6) Charlie2a|DNA|hAT-Charlie -299088 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 269-247 chr3 28759516 28759724 + 2 NA Intergenic MIR|SINE|MIR 184342 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 183-132 chr6 52083849 52084024 + 2 NA intron (NM_138694, intron 2 of 66) intron (NM_138694, intron 2 of 66) 3677 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 501-10 chr1 125058030 125058412 + 2 NA Intergenic ALR/Alpha|Satellite|centr 3539109 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 172-146 chr9 79991802 79991960 + 2 NA intron (NR_121212, intron 3 of 4) MLT1G1|LTR|ERVL-MaLR 16858 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 371-285 chr4 112269536 112269895 + 2 NA non-coding (NR_136622, exon 10 of 10) non-coding (NR_136622, exon 10 of 10) 16189 NM_052864 92610 Hs.310640 NM_052864 ENSG00000145365 TIFA T2BP|T6BP|TIFAA TRAF interacting protein with forkhead associated domain protein-coding 487-295 chr8 112855521 112855980 + 2 NA intron (NM_001363185, intron 9 of 66) intron (NM_001363185, intron 9 of 66) 212257 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 287-58 chr10 73262065 73262337 + 2 NA intron (NM_001367801, intron 26 of 27) MER44C|DNA|TcMar-Tigger 9460 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 344-335 chr3 148048596 148048917 + 2 NA Intergenic L1MD1|LINE|L1 -29403 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 367-187 chr2 924461 924679 + 2 NA Intergenic Intergenic -19119 NR_110179 101060385 Hs.385965 NR_110179 ENSG00000228799 LINC01939 - long intergenic non-protein coding RNA 1939 ncRNA 282-41 chr10 37241769 37241922 + 2 NA Intergenic Intergenic -67341 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 428-97 chr17 72793923 72794150 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -153564 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 408-363 chrX 96148134 96148497 + 2 NA Intergenic Intergenic 189587 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 294-450 chr8 14173867 14174082 + 2 NA intron (NM_139167, intron 4 of 7) intron (NM_139167, intron 4 of 7) 544284 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 365-408 chr8 122813938 122814195 + 2 NA intron (NM_001362797, intron 1 of 4) MIRc|SINE|MIR 32411 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 267-210 chr2 151772995 151773160 + 2 NA Intergenic L1M5|LINE|L1 -38590 NM_001164507 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 378-102 chr12 20658976 20659236 + 2 NA intron (NM_000921, intron 15 of 15) intron (NM_000921, intron 15 of 15) -36249 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 310-320 chr3 31618819 31619066 + 2 NA intron (NM_178862, intron 8 of 15) (ATATA)n|Simple_repeat|Simple_repeat -85271 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 567-123 chr3 127956669 127957061 + 2 NA intron (NM_001370224, intron 4 of 6) intron (NM_001370224, intron 4 of 6) 41633 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 409-200 chr3 98690733 98691032 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -41354 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 242-175 chr2 57692139 57692333 + 2 NA Intergenic L1PA17|LINE|L1 -215415 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 322-286 chr20 13842112 13842351 + 2 NA Intergenic MER34B|LTR|ERV1 57203 NR_147978 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 337-499 chr6 120888041 120888354 + 2 NA Intergenic L1ME3E|LINE|L1 446283 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 277-418 chr8 102551353 102551524 + 2 NA promoter-TSS (NM_024410) promoter-TSS (NM_024410) -151 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 683-61 chr4 120798472 120798993 + 2 NA intron (NM_001300824, intron 8 of 13) intron (NM_001300824, intron 8 of 13) 124134 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 321-327 chr20 12234623 12234918 + 2 NA Intergenic MER3|DNA|hAT-Charlie 316877 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 384-261 chr4 62834746 62834977 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -673096 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 348-458 chr6 88432734 88433069 + 2 NA Intergenic Intergenic 106468 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 307-170 chr16 24163882 24164074 + 2 NA intron (NM_002738, intron 10 of 16) intron (NM_002738, intron 10 of 16) -39138 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 348-387 chr5 2716873 2717119 + 2 NA Intergenic Intergenic 4405 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 423-308 chr9 7661161 7661504 + 2 NA Intergenic Intergenic 138446 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 367-384 chr6 11397920 11398226 + 2 NA Intergenic L2a|LINE|L2 -15725 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 345-141 chr13 98826940 98827171 + 2 NA intron (NM_001366682, intron 43 of 53) intron (NM_001366682, intron 43 of 53) -5029 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 333-103 chr11 130608649 130608922 + 2 NA Intergenic Intergenic -57950 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 294-71 chr12 7082866 7083013 + 2 NA intron (NM_001354346, intron 9 of 10) MIRb|SINE|MIR 8954 NM_001354346 715 Hs.524224 NM_001733 ENSG00000159403 C1R EDSPD1 complement C1r protein-coding 311-305 chr20 49421448 49421679 + 2 NA intron (NM_004975, intron 1 of 1) MLT1G1|LTR|ERVL-MaLR 61105 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 419-305 chr9 28679639 28679931 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 39520 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 222-192 chr2 172355286 172355437 + 2 NA Intergenic Intergenic -71975 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 322-11 chr1 69318539 69318724 + 2 NA Intergenic Intergenic -114624 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 539-104 chr2 28313635 28314139 + 2 NA intron (NR_137438, intron 12 of 12) intron (NR_137438, intron 12 of 12) -3428 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 249-181 chr2 10984299 10984501 + 2 NA Intergenic Intergenic 72466 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 480-303 chr8 129160007 129160322 + 2 NA Intergenic L1M6|LINE|L1 81076 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 268-189 chr2 48011711 48011929 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -106027 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 505-31 chr10 79601556 79601843 + 2 NA Intergenic L1MA5|LINE|L1 -9240 NM_001164647 653509 Hs.535295 NM_005411 ENSG00000122852 SFTPA1 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 surfactant protein A1 protein-coding 322-161 chr14 84104453 84104740 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -1167336 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 521-199 chr5 97730556 97731003 + 2 NA Intergenic Intergenic -109979 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 238-111 chr14 97663839 97664018 + 2 NA intron (NR_033943, intron 2 of 3) L2c|LINE|L2 22730 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 588-142 chr7 40896318 40896872 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 83344 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 539-19 chr10 15606738 15607232 + 2 NA intron (NM_001291494, intron 16 of 28) intron (NM_001291494, intron 16 of 28) 112937 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 334-176 chr15 67392816 67393014 + 2 NA intron (NM_001322472, intron 8 of 13) intron (NM_001322472, intron 8 of 13) 128058 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 316-62 chr10 31506677 31506897 + 2 NA intron (NM_001323638, intron 8 of 12) L1MA4A|LINE|L1 -107032 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 181-168 chr9 10736657 10736760 + 2 NA Intergenic Intergenic 123502 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 281-340 chr5 3060654 3060884 + 2 NA Intergenic L1ME4a|LINE|L1 -117066 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 372-333 chr3 109391290 109391639 + 2 NA Intergenic AluSx1|SINE|Alu -18526 NR_109842 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 364-286 chr3 122750902 122751179 + 2 NA intron (NM_001320728, intron 5 of 6) L3|LINE|CR1 42791 NM_001320728 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 343-161 chr15 69976603 69976823 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 102755 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 309-341 chr3 27698870 27699119 + 2 NA Intergenic L1MC1|LINE|L1 23329 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 223-210 chr3 68320050 68320239 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -180493 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 367-5 chr1 13696320 13696600 + 2 NA Intergenic AluSz|SINE|Alu -3728 NM_001135610 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 189-45 chr12 115229886 115229988 + 2 NA Intergenic Intergenic -545762 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 279-68 chr11 63249974 63250155 + 2 NA Intergenic HERVL74-int|LTR|ERVL -20412 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 367-379 chr5 164977092 164977368 + 2 NA Intergenic L1PA16|LINE|L1 506951 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 391-106 chr14 64424400 64424693 + 2 NA intron (NM_005956, intron 8 of 27) intron (NM_005956, intron 8 of 27) 36193 NM_005956 4522 Hs.652308 NM_005956 ENSG00000100714 MTHFD1 CIMAH|MTHFC|MTHFD methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 protein-coding 478-71 chr13 96638238 96638566 + 2 NA intron (NM_153456, intron 1 of 1) MIR|SINE|MIR 211173 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 335-519 chr7 154243481 154243770 + 2 NA intron (NM_130797, intron 1 of 25) AluY|SINE|Alu -61534 NM_001290252 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 343-315 chr21 31954144 31954463 + 2 NA intron (NM_014586, intron 4 of 10) Charlie29a|DNA|hAT-Charlie 81283 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 240-306 chr3 187976624 187976852 + 2 NA promoter-TSS (NR_135538) promoter-TSS (NR_135538) -331 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 398-389 chr9 137870393 137870614 + 2 NA intron (NR_121583, intron 3 of 3) L1ME3E|LINE|L1 -7279 NM_000718 774 Hs.495522 NM_000718 ENSG00000148408 CACNA1B BIII|CACNL1A5|CACNN|Cav2.2|DYT23 calcium voltage-gated channel subunit alpha1 B protein-coding 245-314 chr6 151465402 151465613 + 2 NA intron (NM_024573, intron 4 of 4) L2a|LINE|L2 13041 NM_024573 79624 Hs.15929 NM_024573 ENSG00000146476 ARMT1 C6orf211 acidic residue methyltransferase 1 protein-coding 242-319 chr5 120332145 120332317 + 2 NA Intergenic Intergenic -132047 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 396-55 chr10 69779866 69780158 + 2 NA Intergenic Intergenic -21894 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 295-493 chr9 32105762 32106038 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -278703 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 554-163 chr4 112158875 112159393 + 2 NA intron (NM_152400, intron 1 of 1) L2a|LINE|L2 13680 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 284-269 chr3 135900434 135900686 + 2 NA Intergenic L1MB4|LINE|L1 -65168 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 336-165 chr14 57142538 57142834 + 2 NA Intergenic Intergenic 126219 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 434-217 chr5 8316503 8316796 + 2 NA Intergenic Intergenic 140915 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 256-160 chr17 47301360 47301593 + 2 NA intron (NM_000212, intron 12 of 14) intron (NM_000212, intron 12 of 14) 22137 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 192-88 chr18 4978432 4978571 + 2 NA Intergenic Intergenic -102681 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 311-283 chr2 217476729 217476978 + 2 NA intron (NR_026597, intron 3 of 12) intron (NR_026597, intron 3 of 12) 194120 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 575-131 chr3 189439856 189440417 + 2 NA Intergenic L1ME3B|LINE|L1 -156610 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 429-142 chr2 23116964 23117199 + 2 NA Intergenic Intergenic -268098 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 411-287 chr8 68376307 68376573 + 2 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -44949 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 678-115 chrX 17398627 17399010 + 2 NA intron (NM_198270, intron 1 of 7) MLT1H|LTR|ERVL-MaLR 23618 NM_001291867 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 616-177 chr9 21910192 21910668 + 2 NA Intergenic L2a|LINE|L2 -56709 NR_024274 51198 Hs.721053 NM_016349 CDKN2A-DT C9orf53|CDKN2A-AS1|bA149I2.3 CDKN2A divergent transcript ncRNA 152-77 chr5 2792989 2793101 + 2 NA Intergenic L1MEc|LINE|L1 40914 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 341-282 chr2 229638728 229638971 + 2 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 75706 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 489-220 chr5 165511852 165512147 + 2 NA Intergenic Intergenic 1041720 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 348-548 chr9 20207217 20207449 + 2 NA Intergenic Intergenic 203905 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 308-289 chr3 38903718 38903874 + 2 NA intron (NM_014139, intron 12 of 25) intron (NM_014139, intron 12 of 25) 46765 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 314-267 chr2 23063148 23063387 + 2 NA Intergenic Intergenic -321912 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 391-278 chr5 11896777 11897034 + 2 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 7541 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 265-101 chr14 45994438 45994668 + 2 NA Intergenic Intergenic -69606 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 309-298 chr20 15020733 15020977 + 2 NA intron (NM_001351663, intron 5 of 17) Tigger3a|DNA|TcMar-Tigger -91337 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 376-354 chr6 143319997 143320251 + 2 NA intron (NM_016108, intron 4 of 5) L1MA10|LINE|L1 122553 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 492-79 chr13 94007626 94008028 + 2 NA intron (NM_005708, intron 3 of 8) intron (NM_005708, intron 3 of 8) -149354 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 297-300 chr3 116340884 116341130 + 2 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -19017 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 417-313 chrX 20334554 20334902 + 2 NA Intergenic Intergenic -67819 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 377-144 chr16 8500379 8500689 + 2 NA Intergenic Intergenic 89304 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 659-60 chr20 16676421 16676973 + 2 NA Intergenic Intergenic -53329 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 338-288 chr2 209858125 209858394 + 2 NA intron (NM_032504, intron 22 of 63) L1ME3D|LINE|L1 86266 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 304-134 chr14 29943539 29943764 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -15804 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 218-339 chr8 137432413 137432624 + 2 NA Intergenic Intergenic -18930 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 325-345 chr3 42734915 42735077 + 2 NA intron (NM_144719, intron 10 of 15) L2b|LINE|L2 2421 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 347-127 chr14 48868697 48868959 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 717552 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 406-138 chr2 39809737 39810006 + 2 NA Intergenic L1PA7|LINE|L1 -30595 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 530-77 chr14 71866058 71866427 + 2 NA Intergenic AluSx|SINE|Alu -65929 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 385-349 chr7 19642868 19643148 + 2 NA Intergenic Intergenic 62428 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 322-208 chr17 70289287 70289559 + 2 NA Intergenic MIRb|SINE|MIR 119888 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 347-89 chr12 26307636 26307929 + 2 NA Intergenic L1MB1|LINE|L1 112209 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 538-252 chr9 29713785 29714197 + 2 NA Intergenic L2c|LINE|L2 -500390 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 476-239 chr6 104392562 104392922 + 2 NA Intergenic AluJo|SINE|Alu 466804 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 246-376 chr7 81070120 81070301 + 2 NA Intergenic Intergenic -147821 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 403-285 chr7 70256433 70256712 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 658097 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 995-17 chr3 189063451 189064181 + 2 NA Intergenic MER77|LTR|ERVL -108155 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 391-163 chr2 33736109 33736352 + 2 NA intron (NR_126403, intron 1 of 5) AluSx3|SINE|Alu -8013 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 304-430 chr5 126264481 126264652 + 2 NA Intergenic Intergenic 20609 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 353-68 chr10 91514253 91514537 + 2 NA non-coding (NR_104291, exon 21 of 21) non-coding (NR_104291, exon 21 of 21) 97065 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 361-479 chr9 80976919 80977149 + 2 NA Intergenic AluJo|SINE|Alu 712501 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 293-40 chr10 75947660 75947867 + 2 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 165002 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 339-47 chr1 246146715 246146893 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 270608 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 286-420 chr7 52134119 52134292 + 2 NA Intergenic Intergenic -740949 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 185-119 chr20 9369472 9369626 + 2 NA intron (NM_000933, intron 6 of 35) intron (NM_000933, intron 6 of 35) 61749 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 243-150 chr16 53728675 53728835 + 2 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 24599 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 345-88 chr11 47755493 47755832 + 2 NA intron (NM_001318339, intron 2 of 16) AluJb|SINE|Alu 11679 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 332-215 chr18 67899759 67899955 + 2 NA TTS (NR_033921) TTS (NR_033921) -85035 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 214-59 chr11 14928199 14928400 + 2 NA Intergenic L1PA16|LINE|L1 -36094 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 387-9 chr1 107981419 107981692 + 2 NA intron (NR_046653, intron 1 of 2) intron (NR_046653, intron 1 of 2) -16375 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 244-216 chr3 7850347 7850544 + 2 NA Intergenic Intergenic 165862 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 292-449 chr8 134639267 134639438 + 2 NA intron (NM_020863, intron 2 of 15) intron (NM_020863, intron 2 of 15) 41281 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 215-350 chrX 95554184 95554354 + 2 NA Intergenic MER66-int|LTR|ERV1 -491043 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 581-155 chr7 34191348 34191842 + 2 NA Intergenic Intergenic 286056 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 221-74 chr13 81716551 81716731 + 2 NA Intergenic Intergenic -489658 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 275-347 chr7 114121980 114122165 + 2 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 35745 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 215-130 chr19 31714056 31714214 + 2 NA Intergenic Intergenic 121854 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 339-62 chr10 46544687 46544982 + 2 NA 3' UTR (NM_014696, exon 3 of 3) 3' UTR (NM_014696, exon 3 of 3) 11237 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 374-354 chr7 18450392 18450624 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -45202 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 268-194 chr2 71326375 71326584 + 2 NA Intergenic Intergenic -5276 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 296-154 chr15 45372461 45372658 + 2 NA intron (NM_001482, intron 2 of 8) intron (NM_001482, intron 2 of 8) 5985 NM_001482 2628 Hs.75335 NM_001482 ENSG00000171766 GATM AGAT|AT|CCDS3 glycine amidinotransferase protein-coding 226-224 chr3 76531282 76531447 + 2 NA Intergenic Intergenic -508735 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 253-24 chr1 182427862 182428016 + 2 NA Intergenic Intergenic 20318 NR_034131 388719 Hs.508989 NM_001010899 ENSG00000203729 LINC00272 C1orf120|NCRNA00272 long intergenic non-protein coding RNA 272 ncRNA 311-564 chrX 155417958 155418229 + 2 NA Intergenic L1MA9|LINE|L1 -34895 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 369-409 chr8 89187864 89188061 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 569749 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 340-232 chr2 2774826 2775012 + 2 NA Intergenic L2c|LINE|L2 351107 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 560-184 chr8 79071978 79072371 + 2 NA Intergenic Intergenic 234645 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 555-12 chr1 241032618 241033013 + 2 NA intron (NM_001350116, intron 3 of 16) L1PB4|LINE|L1 -99457 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 186-35 chr12 61753931 61754078 + 2 NA intron (NM_178539, intron 3 of 4) L1MB1|LINE|L1 438835 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 246-377 chr7 86290683 86290886 + 2 NA Intergenic L1MDb|LINE|L1 -353125 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 182-121 chr4 48982183 48982331 + 2 NA Intergenic L1MB8|LINE|L1 -4018 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 176-10 chr10 17096657 17096749 + 2 NA intron (NM_001081, intron 14 of 66) L1MEg|LINE|L1 33114 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 322-211 chr17 80107191 80107490 + 2 NA intron (NM_001079804, intron 3 of 19) intron (NM_001079804, intron 3 of 19) 5759 NM_000152 2548 Hs.1437 NM_000152 ENSG00000171298 GAA LYAG glucosidase alpha, acid protein-coding 395-132 chr16 83479645 83479984 + 2 NA intron (NM_001220489, intron 5 of 12) MER106A|DNA|hAT-Charlie -28532 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 195-165 chr4 62218627 62218788 + 2 NA Intergenic L2b|LINE|L2 -56942 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 283-319 chr4 45515561 45515756 + 2 NA Intergenic L1MEc|LINE|L1 608396 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 368-3 chr1 36895388 36895610 + 2 NA intron (NM_000831, intron 1 of 15) L1MA2|LINE|L1 139016 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 273-439 chr8 49456127 49456323 + 2 NA Intergenic Intergenic 55955 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 177-118 chr4 60507520 60507636 + 2 NA Intergenic L1MA3|LINE|L1 -415041 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 692-53 chr2 179460195 179460780 + 2 NA intron (NR_148054, intron 5 of 8) LTR8B|LTR|ERV1 102101 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 232-235 chr3 28113429 28113578 + 2 NA Intergenic L1M5|LINE|L1 -128116 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 766-18 chr12 129706733 129707311 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 197003 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 342-429 chr5 144132363 144132651 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 38152 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 331-449 chr6 34255855 34256078 + 2 NA Intergenic L1MEc|LINE|L1 -6858 NR_155741 221491 Hs.381300 NM_178508 ENSG00000186577 SMIM29 C6orf1|LBH small integral membrane protein 29 protein-coding 691-21 chr13 66441540 66441967 + 2 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 223503 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 231-95 chr14 64177341 64177524 + 2 NA exon (NM_182914, exon 96 of 116) exon (NM_182914, exon 96 of 116) -36712 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 238-252 chr3 189342246 189342438 + 2 NA Intergenic Intergenic -101748 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 280-439 chr9 77801592 77801800 + 2 NA intron (NM_002072, intron 3 of 6) intron (NM_002072, intron 3 of 6) -153374 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 250-130 chr14 87200781 87200953 + 2 NA Intergenic Intergenic 295089 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 309-443 chr5 76432769 76432937 + 2 NA intron (NM_006633, intron 1 of 35) LTR33|LTR|ERVL 29568 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 311-334 chr3 30316330 30316545 + 2 NA Intergenic Intergenic -202431 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 256-261 chr3 89724272 89724472 + 2 NA Intergenic Intergenic 616751 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 379-185 chr20 16157263 16157498 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -171498 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 355-91 chr11 70514539 70514774 + 2 NA intron (NM_133266, intron 2 of 10) L1MEf|LINE|L1 116127 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 135-68 chr8 113388607 113388699 + 2 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) -11501 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 354-21 chr1 162655381 162655641 + 2 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 23047 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 327-60 chr10 83773493 83773671 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -96493 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 372-116 chr12 82562123 82562386 + 2 NA Intergenic L1MC4|LINE|L1 -124652 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 246-137 chr15 93915892 93916100 + 2 NA intron (NR_120320, intron 8 of 8) intron (NR_120320, intron 8 of 8) 15295 NR_120323 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 285-329 chr5 24726486 24726690 + 2 NA Intergenic MER5C|DNA|hAT-Charlie -81610 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 314-388 chr3 117008232 117008403 + 2 NA Intergenic Intergenic 86886 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 196-53 chr11 116395027 116395208 + 2 NA Intergenic AluJo|SINE|Alu -244305 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 323-80 chr11 38689680 38689964 + 2 NA Intergenic Intergenic 40964 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 358-411 chr6 89389871 89390077 + 2 NA intron (NM_021244, intron 1 of 6) L1MB7|LINE|L1 22299 NM_021244 58528 Hs.31712 NM_021244 ENSG00000025039 RRAGD RAGD|bA11D8.2.1 Ras related GTP binding D protein-coding 848-24 chr20 7706482 7707091 + 2 NA Intergenic Intergenic 233672 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 207-130 chr2 39992280 39992415 + 2 NA intron (NR_038441, intron 2 of 4) L1M5|LINE|L1 74713 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 404-121 chr16 74040863 74041131 + 2 NA Intergenic Intergenic 174524 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 257-167 chr19 29693628 29693767 + 2 NA Intergenic Intergenic 21359 NM_001031726 83636 Hs.529094 NM_031448 ENSG00000131943 C19orf12 MPAN|NBIA3|NBIA4|SPG43 chromosome 19 open reading frame 12 protein-coding 514-19 chr10 20732000 20732451 + 2 NA Intergenic Intergenic 165377 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 419-243 chr5 173375803 173376071 + 2 NA Intergenic MIRb|SINE|MIR 28482 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 397-244 chr5 16236286 16236562 + 2 NA Intergenic Intergenic 56183 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 318-76 chr10 82306857 82307146 + 2 NA intron (NM_001370082, intron 3 of 10) L1M5|LINE|L1 -74081 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 391-143 chr18 450674 451007 + 2 NA intron (NM_130386, intron 2 of 9) MSTA-int|LTR|ERVL-MaLR 49861 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 253-387 chr7 62595883 62596134 + 2 NA Intergenic ALR/Alpha|Satellite|centr 708048 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 233-281 chr4 177921969 177922164 + 2 NA intron (NR_028342, intron 2 of 5) L1M1|LINE|L1 -14130 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 206-80 chr15 81864553 81864681 + 2 NA Intergenic L1MC1|LINE|L1 181401 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 198-119 chr2 52329826 52329960 + 2 NA intron (NR_135237, intron 8 of 10) L1MA6|LINE|L1 -40755 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 290-96 chr12 5693082 5693283 + 2 NA intron (NM_001278596, intron 15 of 25) L2a|LINE|L2 199050 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 180-20 chr10 70089108 70089278 + 2 NA intron (NM_018649, intron 2 of 8) intron (NM_018649, intron 2 of 8) 36347 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 521-186 chr5 13454584 13454869 + 2 NA Intergenic Intergenic -421840 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 449-162 chr3 63528656 63529056 + 2 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 21195 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 416-314 chr7 69364684 69365075 + 2 NA Intergenic Intergenic 232745 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 400-368 chr9 85112480 85112818 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 406748 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 287-193 chr2 60317703 60317966 + 2 NA Intergenic Intergenic 65202 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 478-142 chr2 85843232 85843589 + 2 NA intron (NM_001363847, intron 5 of 5) L1ME3G|LINE|L1 10761 NM_001354248 8869 Hs.415117 NM_003896 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 288-403 chr7 45879121 45879315 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -9270 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 407-89 chr15 26173018 26173245 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 57318 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 262-379 chr6 102193571 102193769 + 2 NA Intergenic L2a|LINE|L2 794685 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 299-28 chr1 181804537 181804697 + 2 NA 3' UTR (NM_001205294, exon 46 of 46) 3' UTR (NM_001205294, exon 46 of 46) 257095 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 274-325 chr5 163037713 163037917 + 2 NA Intergenic MamRep605|LTR?|LTR? -399756 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 397-323 chr8 6269449 6269766 + 2 NA Intergenic AluSz|SINE|Alu 136941 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 511-44 chr12 28149343 28149765 + 2 NA Intergenic Intergenic -40902 NM_001352081 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 242-362 chr7 21343508 21343680 + 2 NA Intergenic L1PA7|LINE|L1 -84489 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 276-296 chr3 70681799 70682016 + 2 NA Intergenic Intergenic -369269 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 190-86 chr2 65485313 65485475 + 2 NA Intergenic MER39|LTR|ERV1 -52795 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 320-459 chr5 125787943 125788124 + 2 NA Intergenic L2a|LINE|L2 294772 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 210-146 chr2 193283335 193283503 + 2 NA Intergenic Intergenic 533574 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 342-405 chr5 74512685 74513016 + 2 NA intron (NR_126354, intron 1 of 2) intron (NR_126354, intron 1 of 2) 24126 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 470-90 chr16 53666856 53667147 + 2 NA intron (NM_001127897, intron 9 of 24) intron (NM_001127897, intron 9 of 24) 36858 NM_001328423 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 343-498 chr7 14126199 14126405 + 2 NA Intergenic Intergenic -134877 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 579-68 chr2 74787506 74787994 + 2 NA Intergenic L1PA16|LINE|L1 -44905 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 478-134 chr2 41610993 41611446 + 2 NA Intergenic Intergenic -266336 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 370-141 chr14 44812059 44812298 + 2 NA Intergenic Intergenic -13052 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 222-238 chr3 78143109 78143231 + 2 NA Intergenic Intergenic -94207 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 474-106 chr17 3201194 3201563 + 2 NA Intergenic L1M3d|LINE|L1 3861 NM_012352 26189 Hs.532660 NM_012352 ENSG00000172150 OR1A2 OR17-6 olfactory receptor family 1 subfamily A member 2 protein-coding 483-187 chr4 73122834 73123155 + 2 NA intron (NM_032217, intron 18 of 33) intron (NM_032217, intron 18 of 33) -53235 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 331-493 chr7 40360389 40360687 + 2 NA intron (NM_024728, intron 9 of 14) L2b|LINE|L2 225562 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 334-520 chr8 46527118 46527407 + 2 NA Intergenic ALR/Alpha|Satellite|centr 90381 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 289-458 chr8 32803333 32803524 + 2 NA Intergenic Intergenic 81593 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 352-367 chr4 64967709 64967917 + 2 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 36687 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 1198-4 chr15 94955726 94956644 + 2 NA Intergenic L1M5|LINE|L1 100822 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 400-260 chr4 117850722 117850975 + 2 NA intron (NR_147154, intron 1 of 1) AluJo|SINE|Alu 16447 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 330-3 chr1 17965837 17966015 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -99731 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 458-7 chr1 173243808 173244103 + 2 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -36624 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 248-276 chr4 44133258 44133413 + 2 NA Intergenic Intergenic 116273 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 291-243 chr2 189981970 189982222 + 2 NA Intergenic L1PA17|LINE|L1 80633 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 497-241 chr5 174978016 174978349 + 2 NA intron (NR_046113, intron 1 of 2) L1M3|LINE|L1 17549 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 709-25 chr15 94691166 94691701 + 2 NA Intergenic MIR3|SINE|MIR -163930 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 169-61 chr2 124379550 124379666 + 2 NA intron (NM_130773, intron 3 of 23) L1MC1|LINE|L1 354321 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 250-314 chr4 86383638 86383813 + 2 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -12858 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 343-413 chr5 11251447 11251711 + 2 NA intron (NM_001288715, intron 8 of 20) MER119|DNA|hAT-Charlie 337338 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 279-156 chr19 37132136 37132410 + 2 NA Intergenic L2a|LINE|L2 40163 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 746-17 chr11 78991479 78992055 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 410342 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 556-57 chr12 124061052 124061344 + 2 NA intron (NM_001347902, intron 2 of 4) AluSx|SINE|Alu 87983 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 311-450 chr6 145517712 145517886 + 2 NA Intergenic Intergenic 169078 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 464-227 chr6 166807925 166808231 + 2 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 54447 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 316-426 chr5 16025944 16026171 + 2 NA Intergenic Intergenic 90875 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 219-362 chr8 115431946 115432116 + 2 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 235982 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 377-39 chr10 28849358 28849671 + 2 NA intron (NM_001278522, intron 3 of 4) LTR16B1|LTR|ERVL 3106 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 407-208 chr3 149404458 149404778 + 2 NA Intergenic Intergenic 26840 NR_046650 100874091 Hs.549633 NR_046650 ENSG00000240541 TM4SF1-AS1 - TM4SF1 antisense RNA 1 ncRNA 133-34 chr2 49389939 49390033 + 2 NA Intergenic L1PREC2|LINE|L1 -235459 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 276-343 chr4 80887580 80887836 + 2 NA intron (NM_152770, intron 4 of 5) L1M1|LINE|L1 -143000 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 409-40 chr11 95747882 95748126 + 2 NA Intergenic Intergenic 41778 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 320-408 chr4 155323167 155323382 + 2 NA Intergenic Intergenic -30942 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 114-52 chr5 106083169 106083253 + 2 NA Intergenic Intergenic 927803 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 630-68 chr2 210094452 210095046 + 2 NA intron (NM_001307976, intron 5 of 13) intron (NM_001307976, intron 5 of 13) 64827 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 535-234 chr7 159268880 159269239 + 2 NA Intergenic L1M2c|LINE|L1 -124102 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 340-266 chr2 80986626 80986850 + 2 NA Intergenic Intergenic 480208 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 468-217 chr4 31088795 31089091 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -82201 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 386-314 chr6 160672190 160672498 + 2 NA Intergenic L1PREC2|LINE|L1 -8085 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 741-46 chr4 43918843 43919349 + 2 NA Intergenic Intergenic -97765 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 297-80 chr11 79315494 79315697 + 2 NA intron (NM_001098816, intron 1 of 33) MER5A1|DNA|hAT-Charlie 86514 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 275-283 chr5 26008986 26009148 + 2 NA Intergenic Intergenic 818114 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 352-37 chr10 21906835 21907057 + 2 NA intron (NM_022365, intron 6 of 11) intron (NM_022365, intron 6 of 11) 96784 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 314-252 chr19 12070990 12071244 + 2 NA intron (NR_134326, intron 1 of 2) intron (NR_134326, intron 1 of 2) 6386 NM_001136501 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 343-54 chr10 81955806 81955997 + 2 NA intron (NR_163253, intron 2 of 10) L2a|LINE|L2 78214 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 625-130 chrX 74402434 74402912 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -18820 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 295-441 chr7 62968243 62968428 + 2 NA Intergenic ALR/Alpha|Satellite|centr 335721 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 232-291 chr5 16011609 16011779 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 76512 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 270-179 chr2 53267416 53267647 + 2 NA Intergenic Intergenic -500252 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 447-133 chr2 133441529 133441822 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 126788 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 353-510 chr8 38590909 38591117 + 2 NA Intergenic L1ME4b|LINE|L1 10244 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 364-132 chr14 72543048 72543257 + 2 NA intron (NM_001370281, intron 18 of 18) intron (NM_001370281, intron 18 of 18) 26332 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 338-501 chr7 43580511 43580758 + 2 NA Intergenic L1MEg|LINE|L1 -2474 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 237-233 chr3 31955776 31955928 + 2 NA intron (NM_001174060, intron 1 of 10) LTR67B|LTR|ERVL -25898 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 265-257 chr4 28878919 28879142 + 2 NA Intergenic Intergenic 59448 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 628-76 chr2 171498708 171499149 + 2 NA Intergenic AluSx3|SINE|Alu -23305 NM_001256909 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 443-309 chr9 86383725 86384000 + 2 NA Intergenic L1M2|LINE|L1 -29452 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 605-51 chr2 102214007 102214373 + 2 NA intron (NM_001351447, intron 4 of 9) L1M5|LINE|L1 26876 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 319-26 chr1 163484563 163484804 + 2 NA Intergenic L1MC4|LINE|L1 -61492 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 351-127 chr14 62413591 62413851 + 2 NA Intergenic Intergenic -273748 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 238-79 chr12 360880 361038 + 2 NA intron (NM_001042603, intron 5 of 27) L2|LINE|L2 28361 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 274-242 chr20 53248572 53248782 + 2 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 63394 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 142-67 chr6 112907564 112907650 + 2 NA Intergenic L1MA9|LINE|L1 525840 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 378-162 chr16 59674723 59675022 + 2 NA Intergenic (TTTTATT)n|Simple_repeat|Simple_repeat 80319 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 310-68 chr10 130802241 130802488 + 2 NA Intergenic Intergenic 160304 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 284-205 chr2 105912541 105912794 + 2 NA Intergenic Intergenic 60820 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 242-166 chr2 31003183 31003386 + 2 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 126356 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 266-233 chr3 8128365 8128611 + 2 NA Intergenic Intergenic -112181 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 176-71 chr21 23114833 23114946 + 2 NA Intergenic Intergenic 35605 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 468-227 chr4 87783021 87783486 + 2 NA Intergenic Intergenic -16301 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 341-284 chr2 241046691 241047005 + 2 NA intron (NM_001080437, intron 8 of 31) L1MEf|LINE|L1 48230 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 515-86 chr17 56211163 56211510 + 2 NA intron (NM_001365758, intron 2 of 20) L1PB1|LINE|L1 57861 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 391-175 chr2 72707597 72707801 + 2 NA intron (NR_135774, intron 6 of 19) AluSg4|SINE|Alu 118334 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 407-309 chr7 111467732 111467998 + 2 NA intron (NM_001350961, intron 4 of 7) intron (NM_001350961, intron 4 of 7) 94426 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 232-356 chr7 57152953 57153088 + 2 NA Intergenic Intergenic -13156 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 144-34 chr17 70886243 70886352 + 2 NA Intergenic Intergenic 315882 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 195-67 chr15 24873956 24874143 + 2 NA intron (NM_001349461, intron 1 of 12) AluY|SINE|Alu 17537 NM_001349462 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 216-340 chr8 118899989 118900170 + 2 NA Intergenic Intergenic 51806 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 359-91 chr11 67666799 67667119 + 2 NA 5' UTR (NM_001354345, exon 4 of 11) 5' UTR (NM_001354345, exon 4 of 11) 7881 NM_001354345 222 Hs.87539 NM_000695 ENSG00000132746 ALDH3B2 ALDH8 aldehyde dehydrogenase 3 family member B2 protein-coding 311-554 chrX 45223747 45223991 + 2 NA Intergenic L1MDa|LINE|L1 -22993 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 467-280 chr8 86890160 86890521 + 2 NA intron (NM_173538, intron 2 of 10) L1MA7|LINE|L1 23925 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 192-65 chr14 57616029 57616148 + 2 NA intron (NM_001352014, intron 1 of 9) L1MB3|LINE|L1 -122231 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 463-286 chr8 87161480 87161775 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 295212 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 437-87 chr15 72424645 72425004 + 2 NA intron (NR_135678, intron 1 of 3) L2c|LINE|L2 26519 NM_001080462 338949 Hs.446069 NM_001080462 ENSG00000187806 TMEM202 - transmembrane protein 202 protein-coding 201-140 chr21 25094801 25094998 + 2 NA Intergenic L1MEf|LINE|L1 254349 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 381-181 chr2 11503015 11503323 + 2 NA Intergenic Intergenic -30876 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 294-151 chr16 54760625 54760855 + 2 NA Intergenic MIR|SINE|MIR 87493 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 403-274 chr6 146391469 146391842 + 2 NA intron (NM_001278065, intron 7 of 9) intron (NM_001278065, intron 7 of 9) -152178 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 229-415 chr9 71396034 71396249 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 50830 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 480-228 chr5 27663730 27664009 + 2 NA Intergenic L2|LINE|L2 191577 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 626-40 chr14 98462192 98462547 + 2 NA Intergenic Intergenic -249244 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 303-421 chr7 41741736 41741965 + 2 NA intron (NR_027118, intron 2 of 3) LOR1b|LTR|ERV1 -38760 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 310-222 chr2 13792909 13793158 + 2 NA Intergenic MIRb|SINE|MIR 607925 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 214-269 chr5 145825633 145825795 + 2 NA intron (NM_205846, intron 1 of 6) intron (NM_205846, intron 1 of 6) 9628 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 256-419 chr8 80001984 80002166 + 2 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 28184 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 305-230 chr19 34568587 34568822 + 2 NA Intergenic LTR108a_Mam|LTR|ERVL -23318 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 493-47 chr11 63466840 63467194 + 2 NA intron (NM_054108, intron 4 of 5) intron (NM_054108, intron 4 of 5) 24150 NM_001146728 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 201-229 chr7 48414396 48414543 + 2 NA intron (NM_152701, intron 41 of 61) intron (NM_152701, intron 41 of 61) 243011 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 131-30 chr15 86214450 86214573 + 2 NA intron (NM_152336, intron 5 of 24) intron (NM_152336, intron 5 of 24) -97794 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 461-161 chr21 28469724 28470146 + 2 NA Intergenic L1PA16|LINE|L1 -69383 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 306-213 chr19 21841276 21841475 + 2 NA intron (NM_001256653, intron 1 of 3) BSR/Beta|Satellite|Satellite -5193 NM_001256654 7594 Hs.534365 NM_003423 ENSG00000198521 ZNF43 HTF6|KOX27|ZNF39L1 zinc finger protein 43 protein-coding 284-219 chr2 189994201 189994397 + 2 NA Intergenic AluSx1|SINE|Alu 68430 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 587-73 chr2 103433456 103433818 + 2 NA Intergenic Intergenic -449208 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 532-290 chrX 64608204 64608641 + 2 NA Intergenic Intergenic -212970 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 552-158 chr4 104696103 104696540 + 2 NA non-coding (NR_125926, exon 10 of 10) non-coding (NR_125926, exon 10 of 10) -201427 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 258-385 chr8 77854969 77855174 + 2 NA Intergenic L1MC1|LINE|L1 404374 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 232-199 chr2 192954711 192954846 + 2 NA Intergenic Intergenic 204933 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 579-163 chr8 64892681 64893198 + 2 NA Intergenic Intergenic -94202 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 198-104 chr18 75436919 75437083 + 2 NA Intergenic L2a|LINE|L2 -9298 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 173-2 chr1 50396526 50396656 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 26852 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 226-173 chr2 115278908 115279123 + 2 NA intron (NM_001321906, intron 2 of 26) L1M4|LINE|L1 -30222 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 270-393 chr8 107098686 107098865 + 2 NA Intergenic LTR48B|LTR|ERV1 237740 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 186-50 chr14 62768116 62768288 + 2 NA intron (NM_172375, intron 9 of 9) L1PB4|LINE|L1 277256 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 341-559 chr9 22443089 22443377 + 2 NA Intergenic L1M4|LINE|L1 -3591 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 238-210 chr20 53898124 53898321 + 2 NA Intergenic Intergenic -22513 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 375-85 chr11 112444160 112444382 + 2 NA Intergenic L1MB4|LINE|L1 -37961 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 241-361 chr7 27351746 27351978 + 2 NA Intergenic L2|LINE|L2 -104633 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 320-309 chr20 40732736 40732957 + 2 NA Intergenic Intergenic -18223 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 505-108 chr16 68547858 68548255 + 2 NA intron (NR_130976, intron 2 of 4) AluSq|SINE|Alu 8765 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 272-36 chr10 15949175 15949361 + 2 NA Intergenic Intergenic -88735 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 413-118 chr18 6161516 6161784 + 2 NA intron (NM_001365769, intron 13 of 16) intron (NM_001365769, intron 13 of 16) -95094 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 304-318 chr22 42032605 42032846 + 2 NA Intergenic Intergenic 33937 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 259-32 chr1 239219331 239219513 + 2 NA Intergenic Intergenic -167146 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 259-204 chr2 107164733 107164975 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 184671 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 309-351 chr3 78291949 78292243 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -243133 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 193-200 chr8 118642049 118642191 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -20157 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 293-307 chr4 88758224 88758428 + 2 NA intron (NM_001015045, intron 8 of 17) intron (NM_001015045, intron 8 of 17) 48537 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 489-186 chr4 39016236 39016532 + 2 NA intron (NM_001303228, intron 1 of 6) AluSx3|SINE|Alu 16025 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 348-100 chr11 114954668 114954955 + 2 NA Intergenic AluSx|SINE|Alu 276284 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 327-149 chr14 53543016 53543321 + 2 NA Intergenic Intergenic 389814 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 690-110 chrX 138791157 138791657 + 2 NA intron (NM_001139498, intron 2 of 5) intron (NM_001139498, intron 2 of 5) -52054 NM_033642 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 353-47 chr10 16441485 16441734 + 2 NA intron (NM_001261837, intron 2 of 4) intron (NM_001261837, intron 2 of 4) 4666 NM_001261838 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 218-207 chr3 30517675 30517857 + 2 NA Intergenic Intergenic -1102 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 292-91 chr12 15284164 15284396 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -38228 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 312-555 chrX 6589205 6589371 + 2 NA Intergenic Intergenic -54170 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 556-188 chr6 40562649 40563062 + 2 NA intron (NM_020737, intron 1 of 2) (CA)n|Simple_repeat|Simple_repeat 24509 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 187-78 chr2 55298028 55298158 + 2 NA intron (NM_001254943, intron 29 of 33) intron (NM_001254943, intron 29 of 33) 15774 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 209-211 chr3 168566919 168567091 + 2 NA intron (NR_021485, intron 4 of 15) MER57A-int|LTR|ERV1 15151 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 386-294 chr5 80643878 80644143 + 2 NA intron (NM_000791, intron 3 of 5) Tigger1|DNA|TcMar-Tigger 6998 NM_001190470 100462981 NM_001190470 MTRNR2L2 HN2 MT-RNR2 like 2 protein-coding 342-268 chr2 222986953 222987201 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie -64853 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 297-402 chr6 57303084 57303253 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -11637 NM_001282488 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 327-351 chr3 192276667 192276933 + 2 NA intron (NR_046596, intron 3 of 4) MER39B|LTR|ERV1 38170 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 332-40 chr1 237298743 237298991 + 2 NA intron (NM_001035, intron 2 of 104) AluJr|SINE|Alu -172252 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 338-152 chr13 82171034 82171253 + 2 NA Intergenic L1MA5|LINE|L1 -944160 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 638-97 chr3 188128156 188128515 + 2 NA Intergenic Intergenic -25563 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 460-303 chr9 80510336 80510751 + 2 NA Intergenic L2a|LINE|L2 535520 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 202-242 chr7 86607303 86607434 + 2 NA Intergenic L1MEf|LINE|L1 -36541 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 355-214 chr18 59738862 59739170 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -41593 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 354-511 chrX 81734665 81735013 + 2 NA Intergenic L1MA1|LINE|L1 532737 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 249-442 chr9 11904848 11905036 + 2 NA Intergenic L1MC4|LINE|L1 -788443 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 318-598 chrY 11294895 11295088 + 2 NA Intergenic AluYg6|SINE|Alu 1126599 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 256-452 chr9 79667288 79667487 + 2 NA intron (NM_001351563, intron 7 of 17) intron (NM_001351563, intron 7 of 17) 94210 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 280-328 chr5 103793409 103793589 + 2 NA Intergenic Intergenic -230710 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 272-313 chr4 85918189 85918356 + 2 NA intron (NM_001287805, intron 1 of 7) (TA)n|Simple_repeat|Simple_repeat -11744 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 324-208 chr16 73857079 73857280 + 2 NA Intergenic Intergenic 358342 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 381-306 chr5 40596340 40596604 + 2 NA Intergenic Intergenic -83443 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 247-86 chr12 41790112 41790283 + 2 NA Intergenic Intergenic 26008 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 124-39 chr2 191954878 191954954 + 2 NA intron (NM_001305134, intron 8 of 9) intron (NM_001305134, intron 8 of 9) -107828 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 358-522 chr9 118250297 118250565 + 2 NA Intergenic Intergenic -429240 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 330-192 chr16 65455884 65456145 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 120286 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 376-308 chr5 18833780 18834016 + 2 NA Intergenic L1MA5A|LINE|L1 1026624 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 247-382 chr7 52140368 52140564 + 2 NA Intergenic Intergenic -747210 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 586-59 chr16 75072681 75073106 + 2 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 43879 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 268-410 chr8 120400763 120400945 + 2 NA intron (NM_014078, intron 6 of 6) L1PA11|LINE|L1 44296 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 311-64 chr10 88797537 88797755 + 2 NA Intergenic LTR88b|LTR|Gypsy? -5084 NM_001128215 340654 Hs.55118 NM_001128215 ENSG00000173239 LIPM LIPL3|bA304I5.1 lipase family member M protein-coding 367-326 chr4 62101056 62101363 + 2 NA intron (NR_110595, intron 6 of 7) intron (NR_110595, intron 6 of 7) 60556 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 304-169 chr15 81866461 81866668 + 2 NA Intergenic MER113|DNA|hAT-Charlie 179454 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 216-348 chr9 25180033 25180218 + 2 NA Intergenic L1M4c|LINE|L1 498733 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 318-360 chr3 87742159 87742366 + 2 NA Intergenic L1PREC2|LINE|L1 -50444 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 183-147 chr7 108022192 108022307 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -19088 NM_002291 3912 Hs.650585 NM_002291 ENSG00000091136 LAMB1 CLM|LIS5 laminin subunit beta 1 protein-coding 276-228 chr2 75367563 75367752 + 2 NA Intergenic Intergenic -156411 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 540-44 chr11 112705685 112706158 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -150119 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 331-231 chr18 80223301 80223516 + 2 NA intron (NM_032510, intron 1 of 2) L1M4|LINE|L1 24106 NM_032510 84552 Hs.654920 NM_032510 ENSG00000178184 PARD6G PAR-6G|PAR6gamma par-6 family cell polarity regulator gamma protein-coding 372-95 chr12 3409352 3409560 + 2 NA intron (NM_001256536, intron 1 of 9) L1M2a|LINE|L1 28107 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 505-266 chr6 48235795 48236246 + 2 NA Intergenic L1PA12|LINE|L1 -167331 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 156-73 chr4 61913017 61913128 + 2 NA intron (NM_001322246, intron 12 of 25) intron (NM_001322246, intron 12 of 25) 248693 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 700-102 chrX 101012595 101013153 + 2 NA intron (NM_001167972, intron 12 of 12) AluSz|SINE|Alu 39237 NM_024917 79979 Hs.496501 NM_024917 ENSG00000188917 TRMT2B CXorf34|dJ341D10.3 tRNA methyltransferase 2 homolog B protein-coding 196-84 chr15 70709626 70709759 + 2 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) -7410 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 341-493 chr7 45164703 45164945 + 2 NA intron (NM_005856, intron 1 of 2) L1MEc|LINE|L1 7033 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 265-161 chr19 15131337 15131577 + 2 NA Intergenic Intergenic -5671 NM_006844 10994 Hs.78880 NM_006844 ENSG00000105135 ILVBL 209L8|AHAS|HACL1L|ILV2H ilvB acetolactate synthase like protein-coding 621-132 chr8 118707119 118707570 + 2 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -85381 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 319-146 chr14 71214286 71214515 + 2 NA Intergenic L2c|LINE|L2 -106076 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 344-460 chr7 55062576 55062846 + 2 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 43679 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 296-340 chr4 67955587 67955801 + 2 NA intron (NM_001114387, intron 1 of 9) intron (NM_001114387, intron 1 of 9) 7799 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 204-39 chr11 29164619 29164785 + 2 NA Intergenic Intergenic -429711 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 308-167 chr15 100524228 100524445 + 2 NA intron (NM_001290341, intron 2 of 13) MER112|DNA|hAT-Charlie 19950 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 151-5 chr1 176341114 176341219 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -122009 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 410-174 chr21 19090151 19090450 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -330488 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 358-4 chr1 41338500 41338802 + 2 NA Intergenic L1MEc|LINE|L1 -22783 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 209-65 chr11 130339340 130339473 + 2 NA intron (NR_148980, intron 1 of 6) LTR49-int|LTR|ERV1 24413 NR_148980 646383 Hs.155288 NM_001039787 ENSG00000175773 ZBTB44-DT - ZBTB44 divergent transcript ncRNA 600-46 chr17 52582557 52582956 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 192234 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 663-47 chr18 4660846 4661301 + 2 NA Intergenic L1MB7|LINE|L1 -205766 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 355-403 chr5 63225759 63226070 + 2 NA Intergenic Intergenic 647095 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 349-472 chr7 37029473 37029736 + 2 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 31808 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 379-34 chr1 235729837 235730094 + 2 NA intron (NM_000081, intron 36 of 52) intron (NM_000081, intron 36 of 52) -79211 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 601-50 chr16 73931377 73931822 + 2 NA Intergenic L1M5|LINE|L1 283922 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 601-7 chr1 208725311 208725799 + 2 NA Intergenic Intergenic -3133 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 363-96 chr12 17716903 17717157 + 2 NA Intergenic L1MA4|LINE|L1 43731 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 343-194 chr17 50908553 50908812 + 2 NA Intergenic MIRb|SINE|MIR -40704 NM_001243877 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 325-371 chr3 180092802 180092999 + 2 NA Intergenic L1M1|LINE|L1 -55963 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 127-68 chr5 155799046 155799135 + 2 NA Intergenic Intergenic -527667 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 429-96 chr14 84332837 84333204 + 2 NA Intergenic Intergenic -938912 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 229-145 chr17 47366145 47366350 + 2 NA intron (NM_152347, intron 10 of 24) intron (NM_152347, intron 10 of 24) 42292 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 368-217 chr19 30913875 30914119 + 2 NA Intergenic Intergenic -253513 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 486-76 chr14 54233230 54233666 + 2 NA Intergenic Intergenic -163420 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 233-17 chr1 179554458 179554655 + 2 NA non-coding (NR_073544, exon 26 of 26) non-coding (NR_073544, exon 26 of 26) 21392 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 337-405 chr4 98600502 98600792 + 2 NA intron (NM_005723, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 57964 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 526-71 chr13 93133297 93133707 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 88161 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 331-534 chr8 98759043 98759268 + 2 NA intron (NM_006281, intron 3 of 10) Tigger1|DNA|TcMar-Tigger 66516 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 211-68 chr12 115784660 115784846 + 2 NA Intergenic Intergenic 363901 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 463-180 chr3 1401840 1402193 + 2 NA intron (NM_001289080, intron 21 of 22) intron (NM_001289080, intron 21 of 22) 308992 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 212-247 chr4 160095184 160095328 + 2 NA Intergenic Intergenic -317472 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 417-159 chr2 208737478 208737865 + 2 NA intron (NR_136588, intron 3 of 5) L1PA16|LINE|L1 195029 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 279-119 chr15 91279592 91279818 + 2 NA intron (NM_001323036, intron 8 of 11) intron (NM_001323036, intron 8 of 11) 177909 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 197-152 chr4 90299298 90299486 + 2 NA intron (NM_207491, intron 1 of 7) intron (NM_207491, intron 1 of 7) 64361 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 270-372 chr7 129713357 129713510 + 2 NA intron (NM_005011, intron 8 of 10) intron (NM_005011, intron 8 of 10) 57059 NR_029614 406958 NR_029614 ENSG00000207990 MIR182 MIRN182|miRNA182|mir-182 microRNA 182 ncRNA 302-160 chr16 76845855 76846106 + 2 NA Intergenic Intergenic -22956 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 553-184 chr4 163508323 163508796 + 2 NA intron (NM_018352, intron 2 of 6) MER113|DNA|hAT-Charlie 13869 NM_018352 55319 Hs.267446 NM_018352 ENSG00000198498 TMA16 C4orf43 translation machinery associated 16 homolog protein-coding 282-243 chr2 192945811 192946039 + 2 NA Intergenic Intergenic 196080 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 523-217 chr5 38390264 38390700 + 2 NA intron (NM_152403, intron 6 of 21) L1ME3Cz|LINE|L1 12989 NR_102749 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 299-24 chr1 117892199 117892369 + 2 NA intron (NM_001135589, intron 8 of 12) intron (NM_001135589, intron 8 of 12) 37337 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 310-195 chr18 6036341 6036505 + 2 NA intron (NM_001365767, intron 16 of 16) L1M4c|LINE|L1 -140469 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 117-31 chr5 7121097 7121186 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger 148213 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 333-373 chr3 179970146 179970410 + 2 NA intron (NM_001349396, intron 1 of 13) intron (NM_001349396, intron 1 of 13) 3947 NM_001349406 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 196-76 chr14 72371160 72371306 + 2 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -145587 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 299-275 chr3 32187797 32187971 + 2 NA Intergenic L1MB7|LINE|L1 -50795 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 257-339 chr5 170872679 170872896 + 2 NA intron (NM_022897, intron 1 of 27) L1PA10|LINE|L1 10769 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 389-371 chr8 125582621 125582941 + 2 NA Intergenic Intergenic 150572 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 259-108 chr14 29857641 29857856 + 2 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 69348 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 366-420 chr7 109749173 109749459 + 2 NA Intergenic Intergenic 210897 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 348-314 chr3 105085468 105085672 + 2 NA Intergenic Intergenic -281143 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 349-364 chr4 31063967 31064301 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -107010 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 185-2 chr1 46019594 46019744 + 2 NA exon (NM_015112, exon 11 of 29) exon (NM_015112, exon 11 of 29) 111004 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 220-87 chr12 58116168 58116314 + 2 NA Intergenic L1M5|LINE|L1 28349 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 402-366 chr9 42388765 42389007 + 2 NA Intergenic Intergenic 180463 NR_126050 103908605 Hs.721139 NR_126050 LOC103908605 - uncharacterized LOC103908605 ncRNA 240-425 chr8 126889506 126889700 + 2 NA Intergenic Intergenic -123551 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 261-136 chr17 11293346 11293527 + 2 NA intron (NM_001173461, intron 2 of 3) intron (NM_001173461, intron 2 of 3) 52013 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 328-129 chr13 58081385 58081655 + 2 NA Intergenic Intergenic -84307 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 122-29 chr2 212930801 212930870 + 2 NA Intergenic Intergenic -4499 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 173-126 chr7 11995538 11995649 + 2 NA Intergenic Intergenic -163395 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 713-3 chr1 84978379 84978930 + 2 NA intron (NM_001330647, intron 1 of 14) L1MA2|LINE|L1 18459 NM_153259 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 687-82 chr4 18457848 18458383 + 2 NA Intergenic Intergenic -436240 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 364-5 chr1 34683178 34683433 + 2 NA Intergenic AluJr|SINE|Alu -13611 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 218-210 chr3 44721956 44722148 + 2 NA exon (NM_001134442, exon 3 of 3) exon (NM_001134442, exon 3 of 3) -7554 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 321-450 chr5 13724981 13725236 + 2 NA intron (NM_001369, intron 70 of 78) L2b|LINE|L2 219372 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 295-148 chr15 43503923 43504126 + 2 NA intron (NM_005657, intron 1 of 27) FLAM_C|SINE|Alu 6616 NM_005657 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 332-345 chr3 123143935 123144255 + 2 NA intron (NM_006810, intron 11 of 16) intron (NM_006810, intron 11 of 16) -17699 NR_106960 102465667 NR_106960 ENSG00000284421 MIR7110 hsa-mir-7110 microRNA 7110 ncRNA 374-144 chr17 57153357 57153566 + 2 NA Intergenic Intergenic 57972 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 184-78 chr19 51860443 51860596 + 2 NA intron (NM_001370456, intron 5 of 5) intron (NM_001370456, intron 5 of 5) 27417 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 541-209 chr6 165361349 165361779 + 2 NA intron (NM_006661, intron 19 of 22) MLT1C|LTR|ERVL-MaLR -51959 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 316-241 chr19 58213271 58213570 + 2 NA 3' UTR (NM_001278734, exon 8 of 8) 3' UTR (NM_001278734, exon 8 of 8) -15261 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 526-21 chr10 39156641 39157079 + 2 NA Intergenic ALR/Alpha|Satellite|centr 460264 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 393-137 chr18 586626 586936 + 2 NA Intergenic 7SK|RNA|RNA 6401 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 309-320 chr21 30602077 30602250 + 2 NA TTS (NM_181620) TTS (NM_181620) 1076 NM_181620 337979 Hs.553700 NM_181620 ENSG00000186924 KRTAP22-1 KAP22.1 keratin associated protein 22-1 protein-coding 258-154 chr16 61709773 61709975 + 2 NA intron (NM_001796, intron 10 of 11) intron (NM_001796, intron 10 of 11) 326564 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 326-533 chr8 85901161 85901471 + 2 NA Intergenic Intergenic -73374 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 246-176 chr18 75661140 75661357 + 2 NA Intergenic L1M4a1|LINE|L1 51155 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 299-356 chr5 24103935 24104100 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 152669 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 347-184 chr18 30203125 30203313 + 2 NA Intergenic Intergenic -95691 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 548-192 chr5 161478060 161478457 + 2 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 69866 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 380-28 chr1 180770554 180770825 + 2 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) 138667 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 423-246 chr6 131397922 131398247 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 147680 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 259-314 chr5 51851919 51852117 + 2 NA Intergenic Intergenic -156013 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 234-123 chr16 78005454 78005605 + 2 NA Intergenic Intergenic -17019 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 596-181 chrX 46501926 46502377 + 2 NA intron (NM_001190417, intron 5 of 5) AluSg7|SINE|Alu 43270 NM_001039891 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 244-101 chr14 79985409 79985591 + 2 NA Intergenic MER41B|LTR|ERV1 -225919 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 180-31 chr11 113630917 113631064 + 2 NA Intergenic Intergenic 75318 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 333-445 chr5 46287987 46288166 + 2 NA Intergenic ALR/Alpha|Satellite|centr -591696 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 658-131 chr9 4127541 4127997 + 2 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 24414 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 557-7 chr1 85118981 85119351 + 2 NA intron (NM_001288563, intron 16 of 21) L1MB3|LINE|L1 -14628 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 323-285 chr2 212408452 212408646 + 2 NA intron (NM_001042599, intron 1 of 26) FAM|SINE|Alu 17811 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 155-20 chr10 32726171 32726280 + 2 NA intron (NM_001321115, intron 26 of 43) L1MC4a|LINE|L1 175247 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 318-577 chr9 92589755 92590031 + 2 NA intron (NM_001286969, intron 4 of 6) intron (NM_001286969, intron 4 of 6) -10364 NM_001286971 401541 Hs.713775 NM_001012267 ENSG00000188312 CENPP CENP-P centromere protein P protein-coding 246-73 chr11 81957412 81957594 + 2 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) -66667 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 378-409 chr7 71396489 71396744 + 2 NA intron (NM_022479, intron 3 of 10) L1MB7|LINE|L1 -88846 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 324-56 chr10 53162506 53162696 + 2 NA Intergenic Intergenic -390901 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 204-110 chr16 51816497 51816616 + 2 NA Intergenic L1P4|LINE|L1 54037 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 522-7 chr1 159255206 159255543 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -34340 NM_002001 2205 Hs.897 NM_002001 ENSG00000179639 FCER1A FCE1A|FcERI Fc fragment of IgE receptor Ia protein-coding 414-118 chr17 53712655 53712998 + 2 NA Intergenic L1MD3|LINE|L1 -110101 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 250-317 chr4 96042525 96042696 + 2 NA Intergenic Intergenic 202517 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 568-85 chr18 11543824 11544167 + 2 NA Intergenic Intergenic 53947 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 389-280 chr5 12140418 12140705 + 2 NA Intergenic Intergenic -236115 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 316-113 chr11 103522049 103522329 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -327717 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 518-158 chr20 19480396 19480818 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -196011 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 828-46 chr7 48192879 48193511 + 2 NA intron (NM_152701, intron 2 of 61) intron (NM_152701, intron 2 of 61) 21737 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 143-81 chr8 9504627 9504712 + 2 NA Intergenic Intergenic -51243 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 336-214 chr17 60771005 60771180 + 2 NA intron (NM_001330413, intron 6 of 25) AluSz6|SINE|Alu 93241 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 569-182 chr8 135813150 135813535 + 2 NA Intergenic Intergenic 355886 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 207-162 chr20 53094279 53094456 + 2 NA intron (NM_173485, intron 1 of 2) MER113A|DNA|hAT-Charlie -90916 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 205-154 chr2 175461904 175462085 + 2 NA Intergenic Intergenic -280284 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 318-83 chr10 104972579 104972812 + 2 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -306479 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 749-33 chr14 65999727 66000277 + 2 NA Intergenic Intergenic -486369 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 246-337 chr5 132532621 132532804 + 2 NA Intergenic AluSz6|SINE|Alu 10810 NM_000879 3567 Hs.2247 NM_000879 ENSG00000113525 IL5 EDF|IL-5|TRF interleukin 5 protein-coding 259-178 chr19 37141342 37141526 + 2 NA Intergenic Intergenic 31002 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 402-344 chr8 99254451 99254742 + 2 NA intron (NM_017890, intron 17 of 61) L1MDa|LINE|L1 241330 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 207-219 chr4 70663006 70663149 + 2 NA intron (NM_144646, intron 1 of 3) intron (NM_144646, intron 1 of 3) 3431 NM_144646 3512 Hs.643431 NM_144646 ENSG00000132465 JCHAIN IGCJ|IGJ|JCH joining chain of multimeric IgA and IgM protein-coding 479-200 chr5 114594444 114594817 + 2 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 18589 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 309-48 chr10 44039519 44039822 + 2 NA Intergenic Intergenic 127268 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 264-78 chr11 80399985 80400155 + 2 NA Intergenic Intergenic 362733 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 249-281 chr3 182598162 182598327 + 2 NA Intergenic Intergenic -91120 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 278-262 chr3 20263628 20263887 + 2 NA Intergenic Intergenic -77524 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 307-208 chr19 9556506 9556676 + 2 NA Intergenic LOR1-int|LTR|ERV1 17925 NR_134921 101928238 Hs.324978 NR_134920 ENSG00000278611 ZNF426-DT - ZNF426 divergent transcript ncRNA 269-373 chr7 13652301 13652452 + 2 NA Intergenic Intergenic 334138 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 334-434 chr5 123646050 123646292 + 2 NA Intergenic Intergenic 100754 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 314-527 chr7 28911734 28911971 + 2 NA Intergenic MIR3|SINE|MIR 46478 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 568-199 chr8 98590332 98590697 + 2 NA intron (NM_006281, intron 7 of 10) HERVH-int|LTR|ERV1 163556 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 200-217 chr5 86097271 86097440 + 2 NA Intergenic Intergenic -185089 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 384-328 chr6 146767832 146768177 + 2 NA intron (NM_024694, intron 28 of 35) L1MEh|LINE|L1 35820 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 453-32 chr10 98653501 98653926 + 2 NA intron (NM_021828, intron 6 of 11) L1MCa|LINE|L1 -206750 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 494-6 chr1 71135572 71135897 + 2 NA intron (NR_046217, intron 2 of 3) L1MA9|LINE|L1 54410 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 236-247 chr4 7641492 7641662 + 2 NA intron (NM_020777, intron 4 of 26) L2c|LINE|L2 -112513 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 378-259 chr20 53954964 53955306 + 2 NA intron (NM_001366297, intron 7 of 8) intron (NM_001366297, intron 7 of 8) -79426 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 387-342 chr7 51491227 51491508 + 2 NA Intergenic L1MA1|LINE|L1 -98111 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 503-183 chr22 27963323 27963802 + 2 NA intron (NR_026963, intron 2 of 4) AluSx1|SINE|Alu -42950 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 287-26 chr1 178228804 178229085 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -112507 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 339-411 chr4 71995493 71995819 + 2 NA Intergenic MER65-int|LTR|ERV1 -36148 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 1047-12 chr19 29083458 29084072 + 2 NA Intergenic Intergenic 81210 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 190-106 chr21 23592210 23592352 + 2 NA Intergenic Intergenic -207446 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 330-239 chr19 35166204 35166374 + 2 NA exon (NM_001320912, exon 8 of 9) exon (NM_001320912, exon 8 of 9) 11554 NM_144779 53827 Hs.333418 NM_014164 ENSG00000089327 FXYD5 DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 410-284 chr7 84517358 84517656 + 2 NA Intergenic Intergenic -14969 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 390-79 chr13 33893528 33893811 + 2 NA intron (NM_181558, intron 8 of 8) L1MA4|LINE|L1 75520 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 201-167 chr3 185873954 185874102 + 2 NA Intergenic AluSz6|SINE|Alu -48986 NM_006548 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 313-559 chr9 87349498 87349785 + 2 NA Intergenic L1MA9|LINE|L1 -147587 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 250-331 chr5 8894046 8894263 + 2 NA Intergenic Intergenic 54422 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 764-29 chr16 24376876 24377549 + 2 NA Intergenic Intergenic 121659 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 482-68 chr13 30164601 30164972 + 2 NA Intergenic Intergenic -11712 NR_138041 102157400 Hs.639879 NR_138041 LINC00384 - long intergenic non-protein coding RNA 384 ncRNA 278-303 chr4 34404571 34404799 + 2 NA Intergenic Intergenic -134938 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 311-370 chr4 32707848 32708053 + 2 NA Intergenic Intergenic 356912 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 396-154 chr2 28503991 28504298 + 2 NA intron (NM_001170585, intron 1 of 56) L1MEd|LINE|L1 8073 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 457-224 chr7 19955911 19956273 + 2 NA intron (NR_110114, intron 5 of 5) MSTA-int|LTR|ERVL-MaLR -182475 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 611-92 chr20 46154277 46154649 + 2 NA Intergenic Intergenic 36149 NR_136327 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 422-178 chr3 28113632 28114031 + 2 NA Intergenic MIR3|SINE|MIR -127788 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 333-33 chr1 165966002 165966259 + 2 NA Intergenic Intergenic 58209 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 322-429 chr5 60859727 60859953 + 2 NA Intergenic Intergenic -15566 NM_001104558 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 348-531 chr8 122018398 122018607 + 2 NA Intergenic Intergenic -377062 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 219-348 chr8 31456376 31456575 + 2 NA Intergenic AluJb|SINE|Alu -183277 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 378-326 chr4 171574261 171574540 + 2 NA Intergenic MER70-int|LTR|ERVL 64363 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 232-34 chr10 61423064 61423254 + 2 NA intron (NR_134508, intron 4 of 6) L1ME1|LINE|L1 -29480 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 234-53 chr10 129490803 129490935 + 2 NA intron (NM_002412, intron 1 of 4) L1ME3Cz|LINE|L1 23628 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 344-137 chr14 66178037 66178235 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -308235 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 256-243 chr22 27598709 27598946 + 2 NA Intergenic Intergenic 202929 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 232-233 chr3 10790831 10791044 + 2 NA Intergenic L1ME3A|LINE|L1 -25291 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 549-6 chr1 80122009 80122493 + 2 NA Intergenic Intergenic -413504 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 333-241 chr2 72074361 72074616 + 2 NA Intergenic MLT2F|LTR|ERVL 73374 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 329-116 chr12 31501080 31501249 + 2 NA intron (NM_001308339, intron 1 of 22) THE1C|LTR|ERVL-MaLR -88759 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 501-213 chr5 101352628 101352972 + 2 NA Intergenic L1PB4|LINE|L1 -449518 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 603-132 chr5 59313577 59313988 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -37667 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 271-44 chr10 49216315 49216525 + 2 NA Intergenic L1MC1|LINE|L1 -28029 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 419-51 chr11 47382982 47383225 + 2 NA Intergenic Intergenic -4556 NM_001080547 6688 Hs.502511 NM_003120 ENSG00000066336 SPI1 OF|PU.1|SFPI1|SPI-1|SPI-A Spi-1 proto-oncogene protein-coding 209-354 chrX 67978404 67978597 + 2 NA Intergenic L1M4b|LINE|L1 433877 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 300-144 chr16 65571011 65571194 + 2 NA intron (NR_027755, intron 2 of 8) L1MB8|LINE|L1 5198 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 308-125 chr13 31353606 31353901 + 2 NA Intergenic Intergenic 153778 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 239-31 chr10 36449506 36449731 + 2 NA Intergenic Intergenic 671316 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 434-105 chr17 14886383 14886637 + 2 NA Intergenic L1PA15-16|LINE|L1 -128295 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 218-76 chr12 112753428 112753588 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -38030 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 321-339 chr20 57053588 57053849 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -159978 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 216-178 chr2 131150970 131151147 + 2 NA Intergenic Intergenic 46211 NM_001267063 55041 Hs.469944 NM_017958 ENSG00000115762 PLEKHB2 EVT2 pleckstrin homology domain containing B2 protein-coding 331-321 chr20 55711944 55712245 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -284897 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 439-200 chr4 12615268 12615646 + 2 NA Intergenic Intergenic 392006 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 236-142 chr17 51918625 51918810 + 2 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 239997 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 335-101 chr11 93316050 93316301 + 2 NA Intergenic HAL1|LINE|L1 -14542 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 480-191 chr3 107396461 107396833 + 2 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -14488 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 272-46 chr10 53282656 53282853 + 2 NA Intergenic Intergenic -511054 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 297-319 chr4 32238547 32238837 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -112346 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 297-483 chr8 108201560 108201816 + 2 NA 3' UTR (NM_001568, exon 13 of 13) 3' UTR (NM_001568, exon 13 of 13) 47029 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 314-598 chr9 19812435 19812632 + 2 NA Intergenic L1MEg1|LINE|L1 -25514 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 205-95 chr14 90037843 90037999 + 2 NA intron (NM_001008744, intron 15 of 15) L1MC4|LINE|L1 -24073 NM_022054 56659 Hs.510191 NM_022054 ENSG00000152315 KCNK13 K2p13.1|THIK-1|THIK1 potassium two pore domain channel subfamily K member 13 protein-coding 199-159 chr3 59914293 59914432 + 2 NA intron (NR_135491, intron 5 of 6) intron (NR_135491, intron 5 of 6) 166547 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 366-415 chr7 83781270 83781599 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -132295 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 273-321 chr4 53661278 53661470 + 2 NA Intergenic L1ME3G|LINE|L1 -34527 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 543-97 chr17 53083395 53083854 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 98119 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 473-151 chr2 211340311 211340589 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 722879 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 355-362 chr4 56736149 56736411 + 2 NA Intergenic L1MB3|LINE|L1 -54574 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 614-105 chr5 119819104 119819595 + 2 NA Intergenic Intergenic 189790 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 284-215 chr2 163238717 163238891 + 2 NA Intergenic L1M3e|LINE|L1 -400037 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 500-187 chr3 111364049 111364427 + 2 NA Intergenic Intergenic -177959 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 142-35 chr19 28646357 28646451 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 39716 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 297-418 chr6 142639556 142639711 + 2 NA Intergenic Intergenic -1744 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 1081-3 chr12 59799496 59800344 + 2 NA Intergenic L1PA10|LINE|L1 110550 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 264-254 chr21 33213557 33213780 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -16227 NM_001289125 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 510-41 chr11 30679758 30680090 + 2 NA Intergenic L1PA4|LINE|L1 -93571 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 307-187 chr17 54217767 54218016 + 2 NA Intergenic Intergenic 394964 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 246-312 chr5 7146275 7146463 + 2 NA Intergenic L1MC4|LINE|L1 122985 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 323-511 chr7 97695043 97695228 + 2 NA Intergenic L2|LINE|L2 -36951 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 323-494 chr7 45895415 45895599 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 7019 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 431-120 chr2 14203235 14203611 + 2 NA Intergenic L1MEh|LINE|L1 197535 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 271-162 chr17 52837364 52837625 + 2 NA Intergenic Intergenic -24627 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 675-44 chr2 147641317 147641818 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -202950 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 453-250 chr7 35516267 35516704 + 2 NA Intergenic Intergenic 178650 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 261-315 chr5 81569177 81569315 + 2 NA intron (NM_012446, intron 4 of 16) L1ME1|LINE|L1 -175112 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 295-510 chrX 53800134 53800373 + 2 NA Intergenic L1ME3Cz|LINE|L1 -113534 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 259-221 chr2 208874594 208874830 + 2 NA Intergenic L1MEi|LINE|L1 332070 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 302-351 chr5 89886863 89887060 + 2 NA Intergenic Intergenic 129759 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 354-392 chr5 174659912 174660191 + 2 NA Intergenic Intergenic -64531 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 371-394 chr8 128938957 128939286 + 2 NA Intergenic Intergenic 26880 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 259-99 chr13 66343002 66343240 + 2 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 124871 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 551-221 chr8 109832914 109833310 + 2 NA Intergenic L1PREC2|LINE|L1 -141321 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 514-32 chr10 82938260 82938551 + 2 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -705485 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 550-112 chr2 63099857 63100250 + 2 NA Intergenic L1MA4A|LINE|L1 19489 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 174-101 chr4 43660682 43660788 + 2 NA Intergenic Intergenic -168192 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 414-315 chr7 136530988 136531315 + 2 NA Intergenic Intergenic -337501 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 224-303 chr7 94836530 94836705 + 2 NA Intergenic L1M4c|LINE|L1 -70977 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 284-38 chr10 56822285 56822542 + 2 NA Intergenic L1PB4|LINE|L1 -461140 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 166-98 chr5 77641989 77642121 + 2 NA Intergenic Intergenic -3358 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 284-178 chr19 22694060 22694269 + 2 NA Intergenic L1MA8|LINE|L1 59840 NM_020855 57615 Hs.232108 NM_020855 ENSG00000229676 ZNF492 ZNF115 zinc finger protein 492 protein-coding 317-197 chr18 13779378 13779589 + 2 NA Intergenic Intergenic -44666 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 361-323 chr4 61856254 61856591 + 2 NA intron (NM_001371343, intron 9 of 23) (TTCC)n|Simple_repeat|Simple_repeat 305343 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 370-268 chr20 19032079 19032437 + 2 NA Intergenic MER6|DNA|TcMar-Tigger -180384 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 601-34 chr13 28354050 28354583 + 2 NA intron (NM_002019, intron 15 of 29) intron (NM_002019, intron 15 of 29) 140812 NM_002019 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 374-69 chr12 54795253 54795514 + 2 NA Intergenic Intergenic -59133 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 201-258 chr9 72499400 72499553 + 2 NA Intergenic AluSq4|SINE|Alu -22325 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 486-78 chr14 62530667 62530990 + 2 NA Intergenic MLT2F|LTR|ERVL -390855 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 254-74 chr12 19518270 19518461 + 2 NA 3' UTR (NM_153207, exon 8 of 8) 3' UTR (NM_153207, exon 8 of 8) 77766 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 243-159 chr16 86136966 86137172 + 2 NA Intergenic Intergenic -59112 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 287-278 chr4 39605285 39605462 + 2 NA intron (NM_174921, intron 1 of 4) intron (NM_174921, intron 1 of 4) 21748 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 205-185 chr3 89402379 89402563 + 2 NA intron (NM_005233, intron 7 of 16) intron (NM_005233, intron 7 of 16) 294850 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 225-155 chr2 60655841 60656000 + 2 NA Intergenic Intergenic -100348 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 518-100 chr16 35518618 35519006 + 2 NA Intergenic HERVK3-int|LTR|ERVK -11642 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 638-81 chr3 26541882 26542324 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -80703 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 594-38 chr12 94062836 94063243 + 2 NA Intergenic L1M1|LINE|L1 -85538 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 208-236 chr6 76158418 76158572 + 2 NA Intergenic L1P3|LINE|L1 -85817 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 332-351 chr3 144737620 144737908 + 2 NA Intergenic Intergenic 764683 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 547-162 chr4 79719151 79719596 + 2 NA Intergenic Intergenic -108098 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 207-76 chr14 44451016 44451215 + 2 NA Intergenic Intergenic 56168 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 320-5 chr1 38358670 38358916 + 2 NA Intergenic L1ME2|LINE|L1 -116403 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 470-265 chr8 71973019 71973393 + 2 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 102378 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 353-464 chr6 141508479 141508727 + 2 NA Intergenic Intergenic 580196 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 380-239 chr22 48763084 48763415 + 2 NA Intergenic L1M4a1|LINE|L1 -17046 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 319-394 chr4 187313051 187313263 + 2 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) -57491 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 157-25 chr11 28175711 28175801 + 2 NA intron (NM_001113528, intron 3 of 6) L2|LINE|L2 67368 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 318-29 chr1 177129296 177129604 + 2 NA intron (NM_207108, intron 1 of 21) intron (NM_207108, intron 1 of 21) 35262 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 181-128 chr5 113868185 113868333 + 2 NA Intergenic Intergenic 354565 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 264-323 chr5 57669697 57669847 + 2 NA non-coding (NR_104668, exon 3 of 3) non-coding (NR_104668, exon 3 of 3) 19112 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 331-559 chr9 99210336 99210591 + 2 NA Intergenic L1MA4A|LINE|L1 11479 NR_024532 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2 alpha-1,3/1,6-mannosyltransferase protein-coding 334-231 chr19 969007 969187 + 2 NA intron (NM_005224, intron 8 of 8) intron (NM_005224, intron 8 of 8) -15231 NM_024100 57418 Hs.325321 NM_024100 ENSG00000065268 WDR18 Ipi3|R32184_1 WD repeat domain 18 protein-coding 214-170 chr2 153751599 153751742 + 2 NA Intergenic L1M1|LINE|L1 -120252 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 785-23 chr18 4524353 4524976 + 2 NA Intergenic Intergenic -69357 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 456-315 chr8 75056395 75056790 + 2 NA Intergenic Intergenic 56437 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 630-42 chr17 71325266 71325683 + 2 NA Intergenic MER21B|LTR|ERVL -123295 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 472-252 chr5 98102772 98103144 + 2 NA intron (NR_146477, intron 3 of 4) L2|LINE|L2 58281 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 299-292 chr3 99512120 99512351 + 2 NA Intergenic L3|LINE|CR1 -126359 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 221-242 chr5 66798163 66798280 + 2 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -30552 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 333-464 chr5 99113548 99113771 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -183945 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 250-236 chr20 19243111 19243321 + 2 NA intron (NR_024564, intron 7 of 7) intron (NR_024564, intron 7 of 7) 30574 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 338-300 chr20 53073982 53074227 + 2 NA intron (NM_173485, intron 1 of 2) L2b|LINE|L2 101746 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 300-414 chr7 8635835 8636070 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 202343 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 451-210 chr7 13193638 13194060 + 2 NA Intergenic MIR|SINE|MIR 506216 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 333-121 chr12 116571106 116571433 + 2 NA intron (NM_001085481, intron 1 of 1) MER103C|DNA|hAT-Charlie 11888 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 373-393 chr7 124247769 124247974 + 2 NA Intergenic L1PA15|LINE|L1 104225 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 469-126 chr2 49993765 49994134 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -19746 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 298-167 chr17 64436664 64436871 + 2 NA Intergenic AluSp|SINE|Alu -12348 NM_001291317 284021 Hs.631749 NM_001085423 ENSG00000271605 MILR1 Allergin-1|C17orf60|MCA-32|MCA32 mast cell immunoglobulin like receptor 1 protein-coding 315-131 chr14 55597052 55597295 + 2 NA intron (NM_004986, intron 1 of 41) intron (NM_004986, intron 1 of 41) 16966 NR_073129 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 469-193 chr4 31241084 31241437 + 2 NA Intergenic L2c|LINE|L2 70116 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 559-40 chr13 25909508 25909908 + 2 NA intron (NM_016529, intron 33 of 36) L1MB4|LINE|L1 141352 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 546-183 chr5 16550322 16550776 + 2 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) -41551 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 491-172 chr3 104372336 104372670 + 2 NA Intergenic L1MEf|LINE|L1 -848387 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 247-77 chr12 14348749 14348920 + 2 NA Intergenic Intergenic -16798 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 305-93 chr11 30969810 30969972 + 2 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) 22795 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 559 chr1 53282562 53282944 + 2 NA intron (NM_004631, intron 3 of 18) MER5A|DNA|hAT-Charlie 44143 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 400-364 chr9 73233159 73233509 + 2 NA Intergenic MIR3|SINE|MIR 81469 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 336-248 chr19 48663109 48663308 + 2 NA non-coding (NR_004401, exon 2 of 5) non-coding (NR_004401, exon 2 of 5) 9873 NM_145807 126147 Hs.326217 NM_145807 ENSG00000142233 NTN5 - netrin 5 protein-coding 230-123 chr14 99301584 99301728 + 2 NA Intergenic L1ME3A|LINE|L1 -29459 NM_138576 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 237-277 chr4 173009508 173009711 + 2 NA intron (NM_001034845, intron 11 of 12) intron (NM_001034845, intron 11 of 12) -159202 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 160-73 chr4 44662060 44662175 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -10476 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 264-131 chr14 59703887 59704140 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -56993 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 225-311 chr6 136105638 136105838 + 2 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) -32911 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 403-298 chr8 29018180 29018508 + 2 NA intron (NM_001324384, intron 5 of 10) MamRep434|DNA|TcMar-Tigger 127030 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 297-338 chr4 85551352 85551547 + 2 NA intron (NM_001025616, intron 1 of 9) L1PREC2|LINE|L1 76299 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 553-152 chr3 78525993 78526388 + 2 NA Intergenic L1MA6|LINE|L1 -477227 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 320-50 chr10 21287117 21287277 + 2 NA Intergenic Intergenic 85753 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 219-252 chr4 36351441 36351637 + 2 NA Intergenic Intergenic 69923 NM_001170700 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 630-100 chr4 126297744 126298244 + 2 NA Intergenic Intergenic 790735 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 417-132 chr2 65817779 65818042 + 2 NA Intergenic LTR33|LTR|ERVL -385311 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 296-194 chr18 32406503 32406739 + 2 NA intron (NM_001242409, intron 1 of 5) intron (NM_001242409, intron 1 of 5) 64261 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 385-380 chr8 89130954 89131193 + 2 NA Intergenic MER73|LTR|ERVL 626638 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 421-32 chr10 86753100 86753515 + 2 NA Intergenic Intergenic -3332 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 428-53 chr13 44215805 44216191 + 2 NA Intergenic L2b|LINE|L2 -19798 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 569-120 chr3 81452371 81452799 + 2 NA Intergenic LTR83|LTR|ERVL 309060 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 328-91 chr11 92334357 92334589 + 2 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) -17623 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 297-157 chr16 35680743 35680931 + 2 NA Intergenic ALR/Alpha|Satellite|centr -65715 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 428-316 chr9 76933097 76933424 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy -27146 NM_015225 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 157-87 chr4 21993461 21993573 + 2 NA Intergenic L1MA9|LINE|L1 -44766 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 343-178 chr16 48134272 48134551 + 2 NA intron (NM_033226, intron 6 of 28) LTR39|LTR|ERV1 12359 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 326-224 chr2 4426618 4426867 + 2 NA Intergenic Intergenic 229480 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 311-466 chr7 29243860 29244087 + 2 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -35003 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 520-94 chr14 79154847 79155200 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -44959 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 249-162 chr18 10679186 10679381 + 2 NA intron (NM_022068, intron 48 of 51) intron (NM_022068, intron 48 of 51) 17350 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 198-102 chr18 60917423 60917589 + 2 NA Intergenic L1MEd|LINE|L1 -415924 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 201-186 chr4 181014429 181014605 + 2 NA Intergenic Intergenic 144632 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 285-437 chr8 133604505 133604685 + 2 NA Intergenic L1MB5|LINE|L1 -32708 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 483-180 chr3 180251748 180252135 + 2 NA Intergenic Intergenic -162232 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 375-357 chr6 99180435 99180780 + 2 NA Intergenic L1ME3|LINE|L1 55998 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 476-255 chr7 108394962 108395363 + 2 NA intron (NR_163871, intron 2 of 29) intron (NR_163871, intron 2 of 29) 61235 NM_001193584 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 341-136 chr13 58689256 58689433 + 2 NA Intergenic Intergenic -456227 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 169-119 chr7 34334831 34334945 + 2 NA Intergenic L1MB7|LINE|L1 -323330 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 178-64 chr2 80501490 80501593 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 188162 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 375-341 chr5 153738944 153739275 + 2 NA intron (NM_000827, intron 11 of 15) intron (NM_000827, intron 11 of 15) 159878 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 340-87 chr11 96435816 96436148 + 2 NA Intergenic L1MA8|LINE|L1 45969 NM_001261833 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 527-197 chr4 129890469 129890865 + 2 NA intron (NR_151713, intron 11 of 16) intron (NR_151713, intron 11 of 16) 119048 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 314-447 chr5 18130437 18130630 + 2 NA Intergenic AluJb|SINE|Alu 323259 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 323-538 chr8 68316395 68316642 + 2 NA intron (NR_038877, intron 1 of 2) L1ME3C|LINE|L1 -13855 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 559-146 chr5 50320006 50320360 + 2 NA Intergenic Intergenic 121105 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 224-331 chr8 101645649 101645767 + 2 NA intron (NM_024915, intron 13 of 15) MIR|SINE|MIR 145261 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 339-474 chr5 156744637 156744882 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -105536 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 213-85 chr14 37534924 37535119 + 2 NA intron (NM_138731, intron 13 of 13) intron (NM_138731, intron 13 of 13) 60228 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 507-131 chr2 107721846 107722333 + 2 NA Intergenic MIR|SINE|MIR -32023 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 647-41 chr18 67314253 67314700 + 2 NA Intergenic Intergenic -202070 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 253-179 chr2 34880271 34880455 + 2 NA Intergenic Intergenic 202806 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 160-91 chr5 74464869 74465002 + 2 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 72041 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 265-22 chr1 205536465 205536618 + 2 NA Intergenic Intergenic 31872 NM_212503 5129 Hs.445402 NM_002596 ENSG00000117266 CDK18 PCTAIRE|PCTAIRE3|PCTK3 cyclin dependent kinase 18 protein-coding 226-395 chrX 91118608 91118771 + 2 NA Intergenic Intergenic -316150 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 433-248 chr6 115851667 115851929 + 2 NA Intergenic Intergenic -186933 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 206-124 chr2 118281210 118281409 + 2 NA Intergenic Intergenic -94923 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 318-321 chr20 48706207 48706457 + 2 NA intron (NM_020820, intron 6 of 39) L4_B_Mam|LINE|RTE-X 121667 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 376-34 chr10 5869136 5869507 + 2 NA intron (NM_019046, intron 7 of 7) L1MA10|LINE|L1 -20251 NM_001258452 84893 Hs.498543 NM_032807 ENSG00000134452 FBH1 FBXO18|Fbx18|hFBH1 F-box DNA helicase 1 protein-coding 377-271 chr3 103945503 103945696 + 2 NA Intergenic L1MEd|LINE|L1 -421483 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 230-126 chr15 67093101 67093317 + 2 NA intron (NM_005902, intron 1 of 8) MIRc|SINE|MIR 27607 NM_005902 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 426-271 chr7 40213986 40214302 + 2 NA intron (NM_024728, intron 6 of 14) intron (NM_024728, intron 6 of 14) 79168 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 188-17 chr10 53457348 53457530 + 2 NA Intergenic Intergenic -685739 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 273-228 chr2 110202042 110202264 + 2 NA intron (NM_207181, intron 1 of 19) L1ME2z|LINE|L1 2860 NM_207181 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 239-166 chr2 49948306 49948538 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) 25781 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 312-6 chr1 40452701 40452933 + 2 NA intron (NM_001369565, intron 2 of 5) L1MC5a|LINE|L1 2341 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 323-383 chr4 157273998 157274234 + 2 NA intron (NM_001083620, intron 2 of 15) L1MC1|LINE|L1 53388 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 713-83 chrX 57741612 57742103 + 2 NA Intergenic L1MA8|LINE|L1 -61597 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 183-167 chr8 129715398 129715551 + 2 NA Intergenic L1MEc|LINE|L1 -35235 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 320-585 chr9 22612521 22612763 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -33558 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 334-99 chr11 116004710 116004903 + 2 NA Intergenic L1MB5|LINE|L1 -244606 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 482-163 chr3 46839486 46839827 + 2 NA Intergenic L1M4a2|LINE|L1 -5561 NR_160554 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 394-302 chr7 40407085 40407425 + 2 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 272279 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 288-330 chr5 74406095 74406336 + 2 NA intron (NR_126354, intron 2 of 2) MER6A|DNA|TcMar-Tigger 83729 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 358 chr1 2953472 2953670 + 2 NA Intergenic L1MEg|LINE|L1 -67896 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 224-139 chr2 53346774 53346950 + 2 NA Intergenic L1MA4|LINE|L1 -420921 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 384-50 chr11 11932256 11932620 + 2 NA intron (NM_001282659, intron 14 of 27) intron (NM_001282659, intron 14 of 27) 76201 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 244-131 chr17 73459997 73460164 + 2 NA intron (NM_001144952, intron 3 of 44) MLT1G1|LTR|ERVL-MaLR -53603 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 281-159 chr17 33942892 33943101 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 213810 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 320-230 chr18 69792173 69792408 + 2 NA intron (NM_152721, intron 7 of 7) L1MA3|LINE|L1 155583 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 191-57 chr14 79073699 79073803 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -126231 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 259-84 chr12 14671843 14672045 + 2 NA intron (NM_004963, intron 9 of 26) intron (NM_004963, intron 9 of 26) 24655 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 351-27 chr1 221527612 221527815 + 2 NA Intergenic Intergenic -191417 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 514-123 chr18 29985804 29986191 + 2 NA Intergenic L1M4a2|LINE|L1 -312913 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 424-48 chr11 88801795 88802127 + 2 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 246111 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 148-37 chr18 1017924 1018025 + 2 NA Intergenic Intergenic -89981 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 214-186 chr20 20919690 20919850 + 2 NA Intergenic L1M4|LINE|L1 186588 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 352-117 chr12 118053101 118053416 + 2 NA intron (NM_001278557, intron 1 of 8) intron (NM_001278557, intron 1 of 8) 7953 NM_001278558 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding 239-173 chr2 70385013 70385245 + 2 NA Intergenic Intergenic -83062 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 294-406 chr6 68497120 68497372 + 2 NA Intergenic L1MEc|LINE|L1 137078 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 268-79 chr12 20623967 20624168 + 2 NA intron (NM_000921, intron 5 of 15) L1MEd|LINE|L1 52203 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 609-16 chr11 49464346 49464689 + 2 NA Intergenic L1PA4|LINE|L1 -94011 NR_027044 440040 Hs.655746 NR_027044 ENSG00000205035 LOC440040 - glutamate metabotropic receptor 5 pseudogene pseudo 494-318 chr9 104523776 104524147 + 2 NA Intergenic Intergenic 3248 NM_001001919 138804 Hs.553601 NM_001001919 ENSG00000148136 OR13C4 HSHTPCRX17|HTPCRX17|OR2K1|OR37F|OR9-7 olfactory receptor family 13 subfamily C member 4 protein-coding 504-230 chr6 148235722 148236193 + 2 NA Intergenic Intergenic -36371 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 472-64 chr12 73806132 73806473 + 2 NA Intergenic L1MA5A|LINE|L1 486329 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 461-236 chr6 95196542 95196814 + 2 NA Intergenic Intergenic 380773 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 316-331 chr21 23088091 23088351 + 2 NA Intergenic L1M5|LINE|L1 8937 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 523-282 chr9 16673665 16674163 + 2 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -52900 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 643-108 chr6 121283542 121284080 + 2 NA intron (NR_104452, intron 13 of 35) intron (NR_104452, intron 13 of 35) 50669 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 555-111 chr20 21647222 21647646 + 2 NA intron (NR_109878, intron 1 of 4) AluSx|SINE|Alu 56151 NR_109878 101929608 Hs.694665 NR_109878 ENSG00000280350 LINC01726 - long intergenic non-protein coding RNA 1726 ncRNA 425-209 chr4 87588679 87588918 + 2 NA Intergenic Intergenic -19731 NM_014208 1834 Hs.678914 NM_014208 ENSG00000152591 DSPP DFNA39|DGI1|DMP3|DPP|DSP dentin sialophosphoprotein protein-coding 319-248 chr2 81323692 81323908 + 2 NA Intergenic L1PA15-16|LINE|L1 143146 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 301-158 chr17 21945694 21945905 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 253276 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 475-166 chr21 42935384 42935785 + 2 NA Intergenic Harlequin-int|LTR|ERV1 -9986 NM_001308491 90625 NM_001308491 ERVH48-1 C21orf105|NDUFV3-AS1 endogenous retrovirus group 48 member 1 protein-coding 586-41 chr12 34474895 34475329 + 2 NA Intergenic ALR/Alpha|Satellite|centr 452616 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 260-393 chr6 166052737 166052991 + 2 NA Intergenic L1ME1|LINE|L1 -44856 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 558-143 chr3 152262489 152262873 + 2 NA TTS (NR_027037) TTS (NR_027037) -6248 NM_021038 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 288-478 chrX 57167661 57167868 + 2 NA Intergenic Intergenic -30139 NM_019003 54466 Hs.460725 NM_019003 ENSG00000147059 SPIN2A DXF34|SPIN2|TDRD25|dJ323P24.1 spindlin family member 2A protein-coding 185-189 chr7 9015890 9016041 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 582356 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 311-124 chr13 86553266 86553480 + 2 NA Intergenic Intergenic -358547 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 710-2 chr1 44492483 44493126 + 2 NA intron (NM_001319957, intron 1 of 13) L1MB8|LINE|L1 -52689 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 219-145 chr18 56047854 56048006 + 2 NA intron (NR_146511, intron 1 of 2) L1MEd|LINE|L1 5652 NR_146510 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 264-207 chr2 103462062 103462205 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -477704 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 231-264 chr4 124071195 124071385 + 2 NA Intergenic L1MB2|LINE|L1 297026 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 210-220 chr5 35071140 35071343 + 2 NA intron (NR_037910, intron 4 of 7) L1MC5a|LINE|L1 -23292 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 214-356 chr9 130739606 130739758 + 2 NA intron (NM_007313, intron 1 of 10) intron (NM_007313, intron 1 of 10) 25801 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 321-51 chr10 25573800 25573963 + 2 NA intron (NM_020752, intron 7 of 10) intron (NM_020752, intron 7 of 10) -77831 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 595-135 chr5 118636478 118636897 + 2 NA Intergenic Intergenic 40499 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 352-564 chr9 98758040 98758378 + 2 NA intron (NM_173551, intron 11 of 14) L1MC4a|LINE|L1 38346 NM_173551 203286 Hs.406890 NM_173551 ENSG00000165138 ANKS6 ANKRD14|NPHP16|PKDR1|SAMD6 ankyrin repeat and sterile alpha motif domain containing 6 protein-coding 279-40 chr10 57944047 57944251 + 2 NA Intergenic Intergenic 323745 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 466-44 chr11 5618855 5619157 + 2 NA promoter-TSS (NM_001003827) promoter-TSS (NM_001003827) -938 NM_001003827 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 165-120 chr7 34712764 34712911 + 2 NA intron (NM_001300934, intron 2 of 6) intron (NM_001300934, intron 2 of 6) 45435 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 215-234 chr4 97942285 97942462 + 2 NA intron (NM_174952, intron 8 of 10) intron (NM_174952, intron 8 of 10) 201103 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 239-80 chr12 103478250 103478449 + 2 NA exon (NM_198521, exon 2 of 6) exon (NM_198521, exon 2 of 6) 17619 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 332-504 chr7 109817232 109817503 + 2 NA Intergenic L1ME1|LINE|L1 142846 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 332-534 chr8 98709844 98710014 + 2 NA intron (NM_006281, intron 4 of 10) MADE1|DNA|TcMar-Mariner 115742 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 233-140 chr18 61920430 61920624 + 2 NA Intergenic Intergenic -27520 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 216-78 chr12 91057046 91057200 + 2 NA intron (NM_007035, intron 1 of 2) intron (NM_007035, intron 1 of 2) 1231 NM_007035 11081 Hs.125750 NM_007035 ENSG00000139330 KERA CNA2|KTN|SLRR2B keratocan protein-coding 154-93 chr6 48369533 48369638 + 2 NA Intergenic Intergenic -300896 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 386-221 chr22 26795356 26795554 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -64756 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 136-41 chr18 5820621 5820691 + 2 NA Intergenic L1MB1|LINE|L1 -20039 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 257-76 chr11 114521054 114521290 + 2 NA 3' UTR (NM_001367953, exon 8 of 8) 3' UTR (NM_001367953, exon 8 of 8) 38709 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 361-86 chr11 108785979 108786261 + 2 NA intron (NM_004398, intron 13 of 17) L1PA16|LINE|L1 121051 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 350-47 chr10 59974966 59975169 + 2 NA Intergenic L1MC1|LINE|L1 -14154 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 316-298 chr2 172540598 172540872 + 2 NA Intergenic MER61-int|LTR|ERV1 -14638 NR_103731 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 133-25 chr15 91796328 91796402 + 2 NA Intergenic Intergenic -57343 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 501-118 chr2 177472930 177473282 + 2 NA intron (NM_003659, intron 10 of 19) L1MC4|LINE|L1 79690 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 200-104 chr17 54039339 54039511 + 2 NA Intergenic Intergenic 216498 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 434-294 chr8 124004883 124005153 + 2 NA intron (NR_040044, intron 4 of 5) intron (NR_040044, intron 4 of 5) 35764 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 240-268 chr21 40316982 40317149 + 2 NA intron (NR_073202, intron 8 of 32) intron (NR_073202, intron 8 of 32) -66018 NR_038898 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 376-114 chr15 37332024 37332213 + 2 NA Intergenic Intergenic -230807 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 527-147 chr2 192816068 192816428 + 2 NA Intergenic L1MA4|LINE|L1 66403 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 999-2 chr1 163718423 163719219 + 2 NA Intergenic L1PA16|LINE|L1 -295630 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 284-201 chr2 88034953 88035180 + 2 NA intron (NM_016618, intron 2 of 3) A-rich|Low_complexity|Low_complexity 20717 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 438-29 chr10 39258774 39259077 + 2 NA Intergenic ALR/Alpha|Satellite|centr 562329 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 497-119 chr2 49494460 49494847 + 2 NA Intergenic L1MA4A|LINE|L1 -340126 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 227-316 chr6 102987374 102987513 + 2 NA Intergenic Intergenic 1588458 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 317-214 chr2 16532827 16533003 + 2 NA Intergenic Intergenic 132919 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 463-321 chrX 121399320 121399754 + 2 NA Intergenic AluSz6|SINE|Alu 28565 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 297-500 chr8 138718481 138718722 + 2 NA intron (NM_152888, intron 27 of 64) intron (NM_152888, intron 27 of 64) 195440 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 314-457 chr5 39146661 39146866 + 2 NA intron (NM_001243093, intron 3 of 18) intron (NM_001243093, intron 3 of 18) -72364 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 516-93 chr16 52240830 52241177 + 2 NA Intergenic L2c|LINE|L2 -17561 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 363-128 chr14 27328190 27328515 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -284236 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 538-92 chr17 81173938 81174344 + 2 NA intron (NM_001354639, intron 2 of 6) L1M3|LINE|L1 -7920 NM_001080395 9625 Hs.514575 NM_004920 ENSG00000181409 AATK AATYK|AATYK1|LMR1|LMTK1|PPP1R77|p35BP apoptosis associated tyrosine kinase protein-coding 371-154 chr19 44446528 44446800 + 2 NA intron (NM_001278510, intron 2 of 5) L2a|LINE|L2 1808 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 507-111 chr19 37447352 37447711 + 2 NA intron (NM_152484, intron 2 of 5) L1MCc|LINE|L1 19913 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 237-311 chr5 155541276 155541496 + 2 NA Intergenic LTR1D1|LTR|ERV1 527631 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 696-86 chr5 115922473 115923047 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -33811 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 451-257 chrX 62975699 62976099 + 2 NA Intergenic L1PA13|LINE|L1 375433 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 135-28 chr17 63050394 63050512 + 2 NA intron (NM_025185, intron 2 of 25) L2a|LINE|L2 84218 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 242-438 chr9 103051649 103051823 + 2 NA Intergenic L1MA9|LINE|L1 56403 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 327-267 chr2 105625281 105625519 + 2 NA Intergenic Intergenic -14841 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 662-2 chr1 29822226 29822673 + 2 NA Intergenic L1MC1|LINE|L1 215163 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 532-18 chr10 30979454 30979802 + 2 NA intron (NR_026560, intron 1 of 6) L1P3|LINE|L1 19889 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 325-357 chr3 110110179 110110431 + 2 NA Intergenic LTR16B|LTR|ERVL 507477 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 413-66 chr12 45555232 45555440 + 2 NA Intergenic AluJo|SINE|Alu 172585 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 484-234 chr6 48334492 48334816 + 2 NA Intergenic Intergenic -265965 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 398-25 chr1 208471843 208472094 + 2 NA Intergenic Intergenic -227584 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 306-126 chr13 48665626 48665854 + 2 NA intron (NM_001308471, intron 1 of 1) L1MA5A|LINE|L1 11811 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 176-130 chr7 47137419 47137528 + 2 NA Intergenic L1MEc|LINE|L1 327330 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 357-422 chr7 134052409 134052621 + 2 NA intron (NM_021807, intron 17 of 17) intron (NM_021807, intron 17 of 17) -74825 NM_001365700 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 521-115 chr2 4642215 4642661 + 2 NA intron (NR_034134, intron 3 of 4) intron (NR_034134, intron 3 of 4) 13784 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 376-54 chr10 70616202 70616453 + 2 NA Intergenic L1MEd|LINE|L1 -13539 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 377-265 chr3 26888227 26888535 + 2 NA Intergenic Intergenic 193824 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 500-311 chr8 136564016 136564496 + 2 NA intron (NR_147196, intron 2 of 5) L1M3|LINE|L1 33458 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 314-537 chr7 56471183 56471364 + 2 NA Intergenic Intergenic 12046 NR_108095 100240728 Hs.292105 NR_108095 ENSG00000225488 LOC100240728 - uncharacterized LOC100240728 ncRNA 304-145 chr14 62892974 62893221 + 2 NA intron (NM_139318, intron 7 of 10) Tigger1|DNA|TcMar-Tigger 152361 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 342-530 chr8 123730068 123730329 + 2 NA intron (NM_004306, intron 1 of 10) L2|LINE|L2 7195 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 356-197 chr17 69752414 69752683 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 158561 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 350-14 chr1 110982268 110982558 + 2 NA Intergenic Intergenic -18469 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 532-213 chr5 162307099 162307525 + 2 NA Intergenic L1PA6|LINE|L1 239670 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 356-287 chr20 40770712 40770916 + 2 NA Intergenic Intergenic -56191 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 394-204 chr21 23389106 23389381 + 2 NA Intergenic Intergenic -4408 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 350-224 chr2 71418527 71418806 + 2 NA intron (NM_001252613, intron 21 of 27) intron (NM_001252613, intron 21 of 27) -34895 NM_001130979 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 210-93 chr16 22784433 22784578 + 2 NA Intergenic L3|LINE|CR1 -29657 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 521-12 chr1 190111992 190112438 + 2 NA intron (NM_199051, intron 7 of 7) intron (NM_199051, intron 7 of 7) 363795 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 335-369 chr3 181115818 181116054 + 2 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) -59208 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 383-393 chr8 124518619 124518832 + 2 NA intron (NM_001317890, intron 2 of 9) intron (NM_001317890, intron 2 of 9) -10149 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 242-376 chr7 94829187 94829402 + 2 NA Intergenic L1MEg|LINE|L1 -78300 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 341-118 chr12 56886222 56886488 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 48053 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 291-498 chr9 118863108 118863301 + 2 NA Intergenic L1PREC2|LINE|L1 183533 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 256-455 chr9 98470921 98471170 + 2 NA intron (NM_005458, intron 6 of 18) L3|LINE|CR1 -215396 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 671-87 chr7 26607831 26608197 + 2 NA Intergenic Intergenic -29857 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 299-393 chr6 52291839 52292088 + 2 NA Intergenic Intergenic -7221 NR_158963 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 293-96 chr12 127483011 127483251 + 2 NA Intergenic HERVE-int|LTR|ERV1 -143059 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 333-169 chr15 96551681 96551950 + 2 NA Intergenic Intergenic 218050 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 509-18 chr10 5183857 5184218 + 2 NA intron (NR_027916, intron 1 of 7) LTR25|LTR|ERV1 1150 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 285-222 chr2 166049333 166049576 + 2 NA intron (NR_148667, intron 8 of 28) intron (NR_148667, intron 8 of 28) -32077 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 547-194 chr5 151401620 151402068 + 2 NA Intergenic L1PA16|LINE|L1 -35202 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 457-153 chr22 50038400 50038700 + 2 NA intron (NM_001350317, intron 9 of 13) AluJr|SINE|Alu 19677 NM_001350317 164714 Hs.526713 NM_001080447 ENSG00000138892 TTLL8 - tubulin tyrosine ligase like 8 protein-coding 606-94 chr20 8001912 8002513 + 2 NA intron (NM_021156, intron 2 of 7) L2b|LINE|L2 17549 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 285-419 chr8 105075426 105075602 + 2 NA Intergenic Intergenic -242924 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 556-231 chr8 118857230 118857612 + 2 NA Intergenic Intergenic 94464 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 182-49 chr14 25678839 25678967 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -628606 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 334-47 chr10 32600024 32600319 + 2 NA intron (NM_001321115, intron 19 of 43) L1M4c|LINE|L1 154031 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 344-59 chr10 91469325 91469583 + 2 NA intron (NM_182765, intron 5 of 20) L1PA13|LINE|L1 59169 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 350-318 chr3 102757420 102757632 + 2 NA Intergenic Intergenic 322511 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 318-544 chr8 82829248 82829472 + 2 NA Intergenic L1MB3|LINE|L1 -82744 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 615-47 chr15 62520033 62520548 + 2 NA Intergenic Intergenic 124891 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 294-244 chr2 175817460 175817631 + 2 NA Intergenic Intergenic 184722 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 298-55 chr10 85093032 85093262 + 2 NA Intergenic L1MA7|LINE|L1 105758 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 391-276 chr5 5691016 5691243 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 268452 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 251-250 chr3 135616268 135616435 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -349377 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 332-571 chr9 88808848 88809086 + 2 NA Intergenic MER74A|LTR|ERVL -63062 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 404-168 chr2 104595908 104596193 + 2 NA Intergenic Intergenic -85541 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 304-287 chr2 221325154 221325345 + 2 NA Intergenic Intergenic 247055 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 540-149 chr3 106796786 106797282 + 2 NA Intergenic Intergenic 443604 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 472-293 chr7 17727675 17728062 + 2 NA Intergenic Intergenic -168959 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 340-372 chr3 116510193 116510484 + 2 NA Intergenic Intergenic -42135 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 336-47 chr1 237621562 237621872 + 2 NA intron (NM_001035, intron 38 of 104) L1MA7|LINE|L1 150598 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 308-304 chr3 110222397 110222656 + 2 NA Intergenic Intergenic 619698 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 362-475 chrX 45393620 45393806 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -111675 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 198-208 chr6 13673448 13673600 + 2 NA intron (NM_005493, intron 2 of 13) L1MCa|LINE|L1 38311 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 317-136 chr14 23081368 23081651 + 2 NA intron (NM_014977, intron 5 of 18) AluJb|SINE|Alu -9940 NM_001164816 22985 Hs.124490 NM_014977 ENSG00000100813 ACIN1 ACINUS|ACN|fSAP152 apoptotic chromatin condensation inducer 1 protein-coding 241-384 chr8 16593093 16593295 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -400403 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 414-91 chr14 84906495 84906777 + 2 NA Intergenic Intergenic -365296 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 839-30 chr3 24849197 24849946 + 2 NA intron (NM_001290216, intron 1 of 10) Tigger17a|DNA|TcMar-Tigger 20248 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 524-236 chr7 45701934 45702318 + 2 NA intron (NM_021116, intron 14 of 19) intron (NM_021116, intron 14 of 19) 66892 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 336-245 chr19 37072882 37073124 + 2 NA Intergenic Intergenic -5219 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 540-171 chr5 21705241 21705657 + 2 NA Intergenic Intergenic -179005 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 363-396 chr6 139149139 139149447 + 2 NA intron (NM_016217, intron 1 of 3) intron (NM_016217, intron 1 of 3) 14213 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 627-19 chr11 84807727 84808218 + 2 NA intron (NM_001351274, intron 5 of 26) L1MD1|LINE|L1 -87030 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 345-528 chr8 107725095 107725435 + 2 NA Intergenic Intergenic -227347 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 763-34 chr2 229737672 229738352 + 2 NA Intergenic L1M4|LINE|L1 -23457 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 307-238 chr2 76754196 76754399 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -231668 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 244-74 chr12 127172338 127172476 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger 111876 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 332-514 chr8 43638509 43638776 + 2 NA Intergenic ALR/Alpha|Satellite|centr 346200 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 293-205 chr2 136405651 136405804 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie -287572 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 304-319 chr22 43545129 43545297 + 2 NA intron (NM_198856, intron 25 of 29) intron (NM_198856, intron 25 of 29) 28959 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 393-316 chr6 147545698 147545993 + 2 NA intron (NM_001030060, intron 1 of 1) intron (NM_001030060, intron 1 of 1) 37155 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 268-83 chr12 30009439 30009674 + 2 NA Intergenic Intergenic -224797 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 313-144 chr14 56974576 56974798 + 2 NA Intergenic Intergenic 161529 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 589-10 chr10 39313132 39313512 + 2 NA Intergenic ALR/Alpha|Satellite|centr 616726 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 215-295 chr7 22383957 22384157 + 2 NA Intergenic Intergenic -26903 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 189-77 chr18 47618706 47618861 + 2 NA Intergenic Intergenic 238287 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 297-212 chr2 55139635 55139878 + 2 NA Intergenic Intergenic -1925 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 422-227 chr5 2992490 2992734 + 2 NA Intergenic MLT2C1|LTR|ERVL 74758 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 322-283 chr2 209280485 209280752 + 2 NA Intergenic L2|LINE|L2 -143429 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 688-66 chr2 129046062 129046440 + 2 NA Intergenic L1PA7|LINE|L1 181651 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 349-164 chr14 64254164 64254390 + 2 NA intron (NR_073496, intron 5 of 7) intron (NR_073496, intron 5 of 7) 28798 NR_073497 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 208-44 chr11 98610437 98610617 + 2 NA Intergenic Intergenic -410422 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 368-185 chr16 84095574 84095896 + 2 NA exon (NM_003791, exon 4 of 23) exon (NM_003791, exon 4 of 23) 21207 NM_003791 8720 Hs.75890 NM_003791 ENSG00000140943 MBTPS1 PCSK8|S1P|SEDKF|SKI-1 membrane bound transcription factor peptidase, site 1 protein-coding 533-73 chr17 32684284 32684658 + 2 NA intron (NM_015194, intron 16 of 21) L2a|LINE|L2 192653 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 390-211 chr20 26295529 26295788 + 2 NA Intergenic ALR/Alpha|Satellite|centr -86425 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene ncRNA 744-23 chr14 83291630 83292038 + 2 NA Intergenic AluJr|SINE|Alu 649202 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 265-220 chr20 58507757 58507916 + 2 NA intron (NR_130908, intron 1 of 1) L1ME3G|LINE|L1 7102 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 749-63 chr21 30075707 30076292 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 90806 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 288-172 chr2 3883811 3883987 + 2 NA Intergenic FLAM_C|SINE|Alu 90133 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 569-94 chr2 66963689 66964200 + 2 NA intron (NR_110169, intron 4 of 4) intron (NR_110169, intron 4 of 4) -41454 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 363-163 chr16 49570987 49571206 + 2 NA intron (NM_001271620, intron 5 of 7) intron (NM_001271620, intron 5 of 7) -52511 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 289-274 chr21 7923155 7923434 + 2 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -93662 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 346-394 chr5 98489117 98489427 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -279360 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 323-331 chr3 82812413 82812731 + 2 NA Intergenic L1M4c|LINE|L1 826430 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 409-74 chr14 53418507 53418792 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 265295 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 311-104 chr12 82945606 82945848 + 2 NA intron (NM_152588, intron 4 of 11) intron (NM_152588, intron 4 of 11) 258572 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 436-100 chr16 49564217 49564468 + 2 NA intron (NM_001271620, intron 5 of 7) intron (NM_001271620, intron 5 of 7) -45757 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 404-251 chr5 26099415 26099770 + 2 NA Intergenic Intergenic 908639 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 337-279 chr2 162680295 162680527 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -88525 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 443-193 chr22 50605933 50606297 + 2 NA intron (NM_012324, intron 8 of 11) intron (NM_012324, intron 8 of 11) 5322 NM_012324 23542 Hs.558180 NM_012324 ENSG00000008735 MAPK8IP2 IB-2|IB2|JIP2|PRKM8IPL mitogen-activated protein kinase 8 interacting protein 2 protein-coding 298-201 chr2 25315491 25315651 + 2 NA intron (NR_135490, intron 1 of 23) intron (NR_135490, intron 1 of 23) 13150 NR_031570 100302246 NR_031570 ENSG00000221445 MIR1301 MIRN1301|hsa-mir-1301|mir-1301 microRNA 1301 ncRNA 380-328 chr6 6951482 6951747 + 2 NA Intergenic LOR1b|LTR|ERV1 -156129 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 218-187 chr20 14364590 14364798 + 2 NA intron (NM_001351663, intron 3 of 17) L1MB5|LINE|L1 -27027 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 341-466 chr6 80591272 80591545 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 484737 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 239-343 chr6 23231171 23231362 + 2 NA Intergenic Intergenic -513342 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 600-133 chr8 123825771 123826262 + 2 NA Intergenic MamRep1527|LTR|LTR -25971 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 511-190 chr4 45301983 45302358 + 2 NA Intergenic Intergenic -575536 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 352-448 chr6 40932414 40932708 + 2 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 90719 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 180-32 chr11 115754120 115754281 + 2 NA Intergenic Intergenic 6000 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 206-180 chr4 59950771 59950970 + 2 NA Intergenic L1MA3|LINE|L1 937297 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 235-143 chr18 1159598 1159780 + 2 NA Intergenic Intergenic 199940 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 235-34 chr10 23952780 23953007 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) -255898 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 230-154 chr18 10507611 10507765 + 2 NA Intergenic L1MB5|LINE|L1 -18339 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 238-352 chr7 25917090 25917299 + 2 NA Intergenic MER33|DNA|hAT-Charlie 32792 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 340-389 chr4 30559449 30559670 + 2 NA Intergenic MER57B1|LTR|ERV1 -160810 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 220-210 chr22 20921506 20921695 + 2 NA intron (NR_156180, intron 1 of 3) L2b|LINE|L2 4193 NM_005207 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 275-165 chr18 61151445 61151644 + 2 NA Intergenic Intergenic -181886 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 270-79 chr12 28924896 28925137 + 2 NA Intergenic Intergenic -224262 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 390-214 chr20 52477602 52477946 + 2 NA Intergenic Intergenic -143064 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 303-272 chr22 28957291 28957507 + 2 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 40010 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 323-205 chr18 65467465 65467751 + 2 NA Intergenic Intergenic -282644 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 688-6 chr1 95869050 95869542 + 2 NA Intergenic Intergenic -122772 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 262-335 chr5 11676341 11676545 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -87377 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 342-240 chr2 79956260 79956456 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -89775 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 485-131 chr2 61620491 61620779 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -82279 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 451-91 chr17 64201059 64201308 + 2 NA intron (NM_018469, intron 2 of 11) MIRb|SINE|MIR 29551 NM_001288733 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 141-34 chr17 65332214 65332309 + 2 NA Intergenic MIR|SINE|MIR -125280 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 340-159 chr14 84098607 84098782 + 2 NA Intergenic L1MA10|LINE|L1 -1173238 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 540-102 chr18 46636837 46637207 + 2 NA intron (NM_144612, intron 4 of 39) AluSp|SINE|Alu 20011 NM_144612 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 225-56 chr11 46378166 46378318 + 2 NA intron (NM_201533, intron 26 of 30) intron (NM_201533, intron 26 of 30) 1840 NR_039837 100616368 NR_039837 ENSG00000264102 MIR4688 mir-4688 microRNA 4688 ncRNA 260-48 chr10 49061907 49062160 + 2 NA intron (NM_001031746, intron 5 of 7) L1ME1|LINE|L1 53489 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 246-178 chr19 28722493 28722702 + 2 NA non-coding (NR_110759, exon 5 of 10) non-coding (NR_110759, exon 5 of 10) 5097 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 494-300 chr8 137217104 137217445 + 2 NA Intergenic Tigger9b|DNA|TcMar-Tigger 196314 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 610-67 chr17 41867328 41867773 + 2 NA 3' UTR (NM_001303274, exon 29 of 29) 3' UTR (NM_001303274, exon 29 of 29) -2127 NM_018143 55175 Hs.13268 NM_018143 ENSG00000178502 KLHL11 - kelch like family member 11 protein-coding 667-68 chr3 104905033 104905477 + 2 NA Intergenic MIR|SINE|MIR -461458 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 297-237 chr2 169689546 169689828 + 2 NA intron (NM_001085447, intron 1 of 8) L1MB7|LINE|L1 4718 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 261-360 chr7 84135461 84135663 + 2 NA intron (NM_006080, intron 1 of 16) intron (NM_006080, intron 1 of 16) 59227 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 496-47 chr11 50670011 50670474 + 2 NA Intergenic ALR/Alpha|Satellite|centr 261095 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 281-302 chr3 174012284 174012477 + 2 NA intron (NM_001365928, intron 4 of 6) LTR104_Mam|LTR|Gypsy -91584 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 574-174 chr8 3712784 3713215 + 2 NA intron (NM_033225, intron 6 of 69) L1MA8|LINE|L1 -984548 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 380-411 chr8 134420487 134420757 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -177449 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 312-202 chr18 40003282 40003562 + 2 NA Intergenic Intergenic -62864 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 398-20 chr1 186586443 186586795 + 2 NA Intergenic Intergenic 93804 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 294-141 chr15 65215643 65215925 + 2 NA Intergenic Intergenic -4311 NM_003613 8483 Hs.442180 NM_003613 ENSG00000138615 CILP CILP-1|HsT18872 cartilage intermediate layer protein protein-coding 467-10 chr1 92906365 92906741 + 2 NA intron (NM_001006605, intron 1 of 4) intron (NM_001006605, intron 1 of 4) -29403 NM_001252271 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 337-409 chr4 109184733 109185055 + 2 NA intron (NM_198721, intron 3 of 36) L3|LINE|CR1 117764 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 393-134 chr17 70591774 70592108 + 2 NA Intergenic Intergenic 422406 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 360-152 chr16 18047806 18047987 + 2 NA Intergenic Intergenic 284766 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 518-19 chr10 5304994 5305397 + 2 NA Intergenic Intergenic -33959 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 240-49 chr10 57104354 57104574 + 2 NA Intergenic Intergenic 200095 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 363-3 chr1 40520439 40520685 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -11075 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 496-221 chr5 117840950 117841283 + 2 NA intron (NR_104997, intron 1 of 2) L1PREC2|LINE|L1 110755 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 359-125 chr12 118845064 118845382 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -11687 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 323-42 chr10 19889605 19889814 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 73277 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 328-581 chr8 127271571 127271820 + 2 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 27058 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 128-54 chr5 123889318 123889442 + 2 NA Intergenic L1MA4|LINE|L1 343963 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 207-140 chr2 63902029 63902154 + 2 NA intron (NM_001005739, intron 20 of 22) intron (NM_001005739, intron 20 of 22) 60211 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 238-129 chr16 61761294 61761450 + 2 NA intron (NM_001796, intron 8 of 11) intron (NM_001796, intron 8 of 11) 275066 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 649-82 chr4 63159839 63160331 + 2 NA Intergenic Intergenic -998320 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 344-146 chr14 83934477 83934760 + 2 NA Intergenic Intergenic 1291986 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 206-184 chr4 85360503 85360692 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -114553 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 859-40 chr9 4059177 4059735 + 2 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 92727 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 306-336 chr3 180066320 180066482 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -29464 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 360-348 chr5 11028055 11028413 + 2 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -267000 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 258-146 chr15 69639644 69639825 + 2 NA intron (NR_126437, intron 3 of 5) L1MD1|LINE|L1 47534 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 242-162 chr2 12894005 12894226 + 2 NA Intergenic Intergenic 112898 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 309-253 chr2 84733823 84734038 + 2 NA intron (NM_001370, intron 62 of 76) L1ME3A|LINE|L1 147154 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 267-157 chr18 35854536 35854789 + 2 NA Intergenic LTR84b|LTR|ERVL 50264 NR_029616 406963 NR_029616 ENSG00000207797 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 548-109 chr2 30196564 30196929 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 9312 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 367-328 chr4 85475195 85475433 + 2 NA 5' UTR (NM_001025616, exon 1 of 10) 5' UTR (NM_001025616, exon 1 of 10) 164 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 295-237 chr2 187058879 187059046 + 2 NA Intergenic L1MEj|LINE|L1 -209792 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 180-56 chr16 12733917 12734040 + 2 NA intron (NM_018340, intron 2 of 3) intron (NM_018340, intron 2 of 3) 13657 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 314-444 chr5 7099492 7099719 + 2 NA Intergenic Intergenic 169749 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 423-119 chr19 57981489 57981814 + 2 NA intron (NM_001348025, intron 6 of 6) intron (NM_001348025, intron 6 of 6) -7117 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 312-213 chr18 77126575 77126782 + 2 NA intron (NM_001025100, intron 1 of 3) L1MD2|LINE|L1 6105 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 630-4 chr1 112707296 112707812 + 2 NA promoter-TSS (NM_175744) promoter-TSS (NM_175744) -151 NM_001042678 389 Hs.502659 NM_175744 ENSG00000155366 RHOC ARH9|ARHC|H9|RHOH9 ras homolog family member C protein-coding 313-492 chr7 36677782 36678047 + 2 NA intron (NM_001177507, intron 1 of 19) L1MB7|LINE|L1 46580 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 182-3 chr1 55078026 55078166 + 2 NA intron (NM_015306, intron 61 of 67) intron (NM_015306, intron 61 of 67) 37874 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 314-9 chr1 54652619 54652839 + 2 NA intron (NM_001039464, intron 2 of 23) L2a|LINE|L2 10943 NM_001039464 374977 Hs.412482 NM_198547 ENSG00000184313 MROH7 C1orf175|HEATR8 maestro heat like repeat family member 7 protein-coding 306-525 chr8 128195305 128195539 + 2 NA Intergenic AluSc8|SINE|Alu 45306 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 243-208 chr2 68453300 68453450 + 2 NA Intergenic Intergenic 13919 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 330-296 chr2 154809863 154810052 + 2 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 111262 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 499-250 chr7 108443890 108444323 + 2 NA intron (NM_001371132, intron 1 of 30) MER2|DNA|TcMar-Tigger 12291 NM_001193584 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 321-67 chr10 81503051 81503352 + 2 NA Intergenic LTR12C|LTR|ERV1 -371993 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 442-97 chr16 64629266 64629529 + 2 NA Intergenic L2b|LINE|L2 492666 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 241-164 chr19 33967603 33967783 + 2 NA Intergenic L1MEg|LINE|L1 170823 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 325-473 chr6 36075312 36075616 + 2 NA intron (NM_139012, intron 6 of 11) L1ME2|LINE|L1 47656 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 379-363 chr8 134243959 134244284 + 2 NA Intergenic L1M4|LINE|L1 -353950 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 294-306 chr3 108887683 108887938 + 2 NA Intergenic L2b|LINE|L2 65024 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 361-361 chr5 54118069 54118409 + 2 NA intron (NM_019087, intron 3 of 4) Charlie1a|DNA|hAT-Charlie -166640 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 374-185 chr2 70222405 70222610 + 2 NA intron (NR_147232, intron 5 of 10) intron (NR_147232, intron 5 of 10) 26121 NM_001351515 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 321-179 chr14 72636234 72636549 + 2 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 119571 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 207-33 chr10 34280252 34280435 + 2 NA intron (NM_001184789, intron 19 of 22) intron (NM_001184789, intron 19 of 22) -507663 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 292-219 chr2 99855973 99856230 + 2 NA intron (NM_001025108, intron 6 of 23) L1MC3|LINE|L1 249482 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 308-54 chr10 37740326 37740524 + 2 NA Intergenic MER49|LTR|ERV1 54750 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 289-427 chr7 1637638 1637854 + 2 NA Intergenic AluJb|SINE|Alu 23276 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 264-219 chr2 161220189 161220386 + 2 NA intron (NM_001199135, intron 4 of 7) intron (NM_001199135, intron 4 of 7) -24452 NR_110163 100996579 Hs.660929 NR_110163 ENSG00000227403 LINC01806 - long intergenic non-protein coding RNA 1806 ncRNA 579-153 chr7 24135588 24136011 + 2 NA Intergenic Intergenic -148391 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 514-64 chr12 80393237 80393666 + 2 NA Intergenic Intergenic -50784 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 590-160 chr7 83307096 83307474 + 2 NA Intergenic Intergenic -144401 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 503-148 chr2 60966873 60967172 + 2 NA intron (NM_144709, intron 6 of 17) Tigger19b|DNA|TcMar-Tigger 50190 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 542-242 chr9 116541790 116542143 + 2 NA intron (NR_033973, intron 2 of 11) L1MD1|LINE|L1 37683 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 399-54 chr11 42275295 42275563 + 2 NA Intergenic L1M2|LINE|L1 -21739 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 360-50 chr10 85375521 85375874 + 2 NA Intergenic Intergenic 57075 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 443-119 chr17 14309520 14309901 + 2 NA intron (NR_130138, intron 1 of 2) intron (NR_130138, intron 1 of 2) 5970 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 360-47 chr10 82300291 82300600 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -67525 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 295-512 chrX 122377549 122377801 + 2 NA Intergenic L1MA1|LINE|L1 -806568 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 394-257 chr5 24964508 24964802 + 2 NA Intergenic L1MD|LINE|L1 -124072 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 229-221 chr20 21424966 21425154 + 2 NA Intergenic Intergenic -27534 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 273-399 chr6 129021824 129021999 + 2 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 138770 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 381-176 chr19 57158287 57158531 + 2 NA exon (NM_001012729, exon 4 of 6) exon (NM_001012729, exon 4 of 6) 9076 NM_001012729 503835 Hs.585857 NM_001012729 ENSG00000258873 DUXA - double homeobox A protein-coding 310-373 chr4 83886974 83887199 + 2 NA Intergenic Intergenic 350978 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 206-173 chr4 19660212 19660402 + 2 NA Intergenic Intergenic -591598 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 406-71 chr14 25600623 25600882 + 2 NA Intergenic L1MEg|LINE|L1 -550455 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 310-297 chr20 59972830 59973068 + 2 NA intron (NM_177980, intron 4 of 17) intron (NM_177980, intron 4 of 17) 14526 NM_177980 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 214-32 chr10 18870159 18870358 + 2 NA Intergenic MLT2A2|LTR|ERVL -178543 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 582-28 chr12 43236082 43236536 + 2 NA Intergenic Intergenic 80994 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 806-7 chr10 108293407 108294182 + 2 NA Intergenic L1ME3A|LINE|L1 -224501 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 244-144 chr19 58022270 58022458 + 2 NA Intergenic MER53|DNA|hAT -11661 NM_182572 284312 Hs.643437 NM_182572 ENSG00000152467 ZSCAN1 MZF-1|ZNF915 zinc finger and SCAN domain containing 1 protein-coding 310-100 chr12 25047360 25047568 + 2 NA intron (NM_001321724, intron 17 of 17) L1PA11|LINE|L1 -4764 NM_001366542 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 307-242 chr2 95247762 95247980 + 2 NA Intergenic L1PA16|LINE|L1 -26578 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 350-8 chr1 79621744 79622082 + 2 NA Intergenic Intergenic -615183 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 300-323 chr4 62114795 62114950 + 2 NA intron (NR_110595, intron 6 of 7) intron (NR_110595, intron 6 of 7) 46893 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 305-256 chr2 68680574 68680762 + 2 NA Intergenic L2a|LINE|L2 37080 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 509-65 chr13 33397711 33398042 + 2 NA intron (NM_001243476, intron 5 of 17) MLT1A0|LTR|ERVL-MaLR -62610 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 334-505 chr7 91441853 91442175 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 177581 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 329-165 chr14 65535068 65535232 + 2 NA intron (NM_004480, intron 2 of 9) AluSz|SINE|Alu 64048 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 578-28 chr10 81275925 81276392 + 2 NA Intergenic Intergenic -599036 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 324-335 chr22 45873263 45873436 + 2 NA Intergenic L1MEc|LINE|L1 103813 NM_058238 7477 Hs.512714 NM_058238 ENSG00000188064 WNT7B - Wnt family member 7B protein-coding 394-236 chr4 47841324 47841552 + 2 NA intron (NR_125881, intron 1 of 2) intron (NR_125881, intron 1 of 2) -3332 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 402-134 chr19 37069465 37069832 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -8574 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 200-105 chr17 56908240 56908381 + 2 NA intron (NM_005082, intron 2 of 8) intron (NM_005082, intron 2 of 8) 5739 NM_005082 7706 Hs.528952 NM_005082 ENSG00000121060 TRIM25 EFP|RNF147|Z147|ZNF147 tripartite motif containing 25 protein-coding 365-190 chr2 67183134 67183371 + 2 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -30156 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 245-68 chr11 29255231 29255416 + 2 NA Intergenic Intergenic -339090 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 291-454 chr8 87806458 87806687 + 2 NA Intergenic L1MC1|LINE|L1 67443 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 552-222 chr9 77520061 77520458 + 2 NA intron (NR_121184, intron 4 of 4) intron (NR_121184, intron 4 of 4) 72610 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 153-46 chr2 7861752 7861873 + 2 NA Intergenic Intergenic 37843 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 277-356 chr6 121894861 121895062 + 2 NA Intergenic Intergenic 459315 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 690-108 chr9 86273699 86274324 + 2 NA intron (NM_030940, intron 2 of 3) L1ME4b|LINE|L1 8527 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|MMDS5|hIscA iron-sulfur cluster assembly 1 protein-coding 256-376 chr7 1997461 1997704 + 2 NA intron (NM_001013837, intron 14 of 18) intron (NM_001013837, intron 14 of 18) -57011 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 407-316 chr8 46811777 46812128 + 2 NA Intergenic AluYh3|SINE|Alu -28934 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 366-101 chr12 46157163 46157421 + 2 NA Intergenic Intergenic 109224 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 246-196 chr2 99255268 99255423 + 2 NA promoter-TSS (NM_175735) promoter-TSS (NM_175735) -238 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 539-90 chr17 53978619 53979083 + 2 NA Intergenic L1MA3|LINE|L1 155924 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 482-127 chr2 101981995 101982382 + 2 NA Intergenic MIR|SINE|MIR -1277 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 181-78 chr2 190548381 190548533 + 2 NA Intergenic Intergenic -13735 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 233-396 chr9 28179332 28179487 + 2 NA intron (NM_152570, intron 5 of 6) (AT)n|Simple_repeat|Simple_repeat 539896 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 351-135 chr14 75610512 75610781 + 2 NA intron (NM_001195283, intron 1 of 9) L2c|LINE|L2 5106 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 278-230 chr2 129552114 129552320 + 2 NA Intergenic Intergenic -278326 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 499-255 chr8 34906774 34907222 + 2 NA Intergenic Intergenic 123077 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 438-23 chr1 203086074 203086330 + 2 NA promoter-TSS (NM_002479) promoter-TSS (NM_002479) -190 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 320-467 chr5 155780546 155780761 + 2 NA Intergenic Intergenic -546104 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 204-145 chr2 76167973 76168138 + 2 NA Intergenic L1ME3A|LINE|L1 -457140 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 207-196 chr3 108257429 108257582 + 2 NA Intergenic Intergenic -35081 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 247-42 chr10 72507940 72508102 + 2 NA intron (NM_001195519, intron 1 of 6) intron (NM_001195519, intron 1 of 6) 15965 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 233-89 chr14 33699846 33700046 + 2 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) -8991 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 614-14 chr10 92458210 92458781 + 2 NA intron (NR_136399, intron 23 of 25) AluSg|SINE|Alu 39266 NM_001322797 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 414-158 chr2 114663058 114663301 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 170369 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 348-344 chr4 31710811 31711112 + 2 NA Intergenic Intergenic 204417 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 151-56 chr3 88922116 88922230 + 2 NA Intergenic Intergenic -185448 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 347-328 chr4 4721445 4721678 + 2 NA Intergenic L1MC2|LINE|L1 -40199 NR_125892 101928279 Hs.586152 NR_125892 LOC101928279 - uncharacterized LOC101928279 ncRNA 315-88 chr11 78761515 78761821 + 2 NA intron (NM_001098816, intron 18 of 33) L1MEd|LINE|L1 -186804 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 210-100 chr17 69645282 69645445 + 2 NA intron (NR_109972, intron 3 of 4) L1MC4a|LINE|L1 51376 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 326-103 chr11 79482864 79483055 + 2 NA Intergenic MIR1_Amn|SINE|MIR -41929 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 316-579 chr9 38123549 38123801 + 2 NA Intergenic AluJo|SINE|Alu -54448 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 351-267 chr20 60653781 60654097 + 2 NA Intergenic AluJo|SINE|Alu 89377 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 274-145 chr15 80499361 80499557 + 2 NA intron (NM_014862, intron 5 of 18) intron (NM_014862, intron 5 of 18) 63485 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 451-138 chr22 47894895 47895287 + 2 NA Intergenic L1PA13|LINE|L1 263417 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 231-5 chr1 29842721 29842908 + 2 NA Intergenic FLAM_A|SINE|Alu 194798 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 562-139 chr3 38811959 38812464 + 2 NA Intergenic MIRb|SINE|MIR -18201 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 276-486 chr9 132536083 132536309 + 2 NA intron (NM_207417, intron 4 of 6) MER89|LTR|ERV1 -46410 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 236-256 chr4 61469821 61469970 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 267723 NM_001371342 334-502 chr7 63133406 63133636 + 2 NA Intergenic L1MA3|LINE|L1 170535 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 472-304 chr7 143975226 143975573 + 2 NA Intergenic Intergenic 15472 NM_012369 26211 Hs.553595 NM_012369 ENSG00000213215 OR2F1 7M1-2|OLF3|OR14-60|OR2F3|OR2F3P|OR2F4|OR2F5|OR7-139|OR7-140 olfactory receptor family 2 subfamily F member 1 (gene/pseudogene) protein-coding 196-261 chr8 128979850 128980021 + 2 NA Intergenic Intergenic -13934 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 758-77 chr8 119322114 119322679 + 2 NA Intergenic L1PA16|LINE|L1 -2775 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 284-57 chr10 98621307 98621557 + 2 NA intron (NM_021828, intron 7 of 11) intron (NM_021828, intron 7 of 11) -174469 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 235-184 chr2 152844410 152844540 + 2 NA Intergenic Intergenic 125838 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 451-8 chr1 155905414 155905767 + 2 NA intron (NM_006912, intron 3 of 5) MIRb|SINE|MIR 5328 NM_001256821 6016 Hs.491234 NM_006912 ENSG00000143622 RIT1 NS8|RIBB|RIT|ROC1 Ras like without CAAX 1 protein-coding 415-183 chr3 94265866 94266263 + 2 NA Intergenic Intergenic 203003 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 312-25 chr1 167179936 167180108 + 2 NA intron (NR_110811, intron 3 of 3) AluJb|SINE|Alu 15783 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 455-285 chr8 127629483 127629893 + 2 NA Intergenic Intergenic 104279 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 420-192 chr3 151577610 151577995 + 2 NA Intergenic L1MCc|LINE|L1 -11807 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 363-330 chr4 63280880 63281195 + 2 NA Intergenic L1PA15|LINE|L1 -1119272 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 491-271 chr8 144855652 144856028 + 2 NA Intergenic Intergenic -2284 NM_001081003 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 401-150 chr2 21744539 21744884 + 2 NA Intergenic Intergenic -34059 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 297-55 chr10 63955356 63955583 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -433579 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 297-109 chr12 48210675 48210921 + 2 NA Intergenic AluSx|SINE|Alu -7506 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 255-22 chr10 22505413 22505613 + 2 NA Intergenic Intergenic -67584 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 198-160 chr3 35812438 35812585 + 2 NA Intergenic L1ME3C|LINE|L1 68035 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 310-224 chr2 14870151 14870333 + 2 NA Intergenic L1MEc|LINE|L1 237525 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 553-172 chr4 43083428 43083854 + 2 NA Intergenic L1P4|LINE|L1 190375 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 255-233 chr20 53532325 53532485 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -20365 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 609-35 chr15 59961358 59961849 + 2 NA Intergenic L1M4c|LINE|L1 -42708 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 464-193 chr5 8179303 8179681 + 2 NA Intergenic Intergenic 278072 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 344-105 chr12 37391025 37391324 + 2 NA Intergenic ALR/Alpha|Satellite|centr -925600 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 270-349 chr7 9092882 9093116 + 2 NA Intergenic L1PREC2|LINE|L1 -541271 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 287-289 chr4 105255980 105256188 + 2 NA intron (NM_001127208, intron 6 of 10) L1MC1|LINE|L1 96797 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 168-35 chr14 73133990 73134124 + 2 NA Intergenic Intergenic -2450 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 251-343 chr6 96103239 96103468 + 2 NA intron (NM_006581, intron 1 of 2) intron (NM_006581, intron 1 of 2) 87379 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 334-527 chr8 71416587 71416767 + 2 NA intron (NM_001370336, intron 2 of 17) MER5A1|DNA|hAT-Charlie -54608 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 430-188 chr3 34669691 34669969 + 2 NA Intergenic L1MA1|LINE|L1 724193 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 400-39 chr10 92758531 92758852 + 2 NA Intergenic L1ME4b|LINE|L1 -68140 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 577-141 chr5 18444453 18444802 + 2 NA Intergenic Intergenic 637353 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 190-38 chr12 58644441 58644605 + 2 NA intron (NR_120452, intron 1 of 7) UCON33|DNA|TcMar-Tigger 52821 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 279-209 chr2 218577834 218578065 + 2 NA intron (NR_073390, intron 1 of 6) intron (NR_073390, intron 1 of 6) 9110 NM_005444 9125 Hs.148767 NM_005444 ENSG00000144580 CNOT9 CAF40|CT129|RCD-1|RCD1|RQCD1 CCR4-NOT transcription complex subunit 9 protein-coding 459-139 chr2 81081621 81082017 + 2 NA Intergenic L1M4|LINE|L1 385127 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 236-37 chr10 36518947 36519138 + 2 NA Intergenic MLT2B3|LTR|ERVL -606815 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 523-175 chr3 29024012 29024334 + 2 NA Intergenic Intergenic 256766 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 532-97 chr17 72709239 72709747 + 2 NA intron (NM_001352692, intron 7 of 9) MLT1K|LTR|ERVL-MaLR -69021 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 328-20 chr1 158225373 158225653 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -22823 NM_001320652 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 547-216 chr7 30824062 30824568 + 2 NA intron (NR_037598, intron 7 of 19) MSTC|LTR|ERVL-MaLR 52898 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 289-269 chr20 55368768 55368938 + 2 NA Intergenic Intergenic -54190 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 650-91 chr5 10907001 10907463 + 2 NA Intergenic L1ME4c|LINE|L1 -145998 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 367-194 chr2 48171225 48171499 + 2 NA Intergenic Intergenic -143320 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 311-427 chr5 158202677 158202870 + 2 NA Intergenic Intergenic 207000 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 256-70 chr11 76514674 76514825 + 2 NA intron (NM_001300942, intron 11 of 21) L1MB3|LINE|L1 69724 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 370-459 chr8 136581923 136582160 + 2 NA intron (NR_147196, intron 2 of 5) L1M5|LINE|L1 51243 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 712-16 chr11 21468224 21468849 + 2 NA intron (NM_201551, intron 15 of 18) Charlie20a|DNA|hAT-Charlie -724549 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 680-28 chr12 49514327 49514755 + 2 NA intron (NR_120663, intron 10 of 14) intron (NR_120663, intron 10 of 14) -24489 NM_001314030 23416 Hs.64064 NM_012284 ENSG00000135519 KCNH3 BEC1|ELK2|Kv12.2 potassium voltage-gated channel subfamily H member 3 protein-coding 341-268 chr2 145845824 145846046 + 2 NA Intergenic Intergenic -741122 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 253-417 chr8 122759501 122759671 + 2 NA Intergenic Intergenic -22069 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 517-130 chr2 67030440 67030806 + 2 NA Intergenic Intergenic -55823 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 520-117 chr17 53615748 53616103 + 2 NA Intergenic Intergenic -207002 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 287-337 chr5 163765367 163765557 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 259843 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 115-44 chr7 33455215 33455282 + 2 NA intron (NM_001348037, intron 18 of 20) MIRb|SINE|MIR 325684 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 373-83 chr11 132593785 132594115 + 2 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 309648 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 192-221 chr9 80905756 80905883 + 2 NA Intergenic L1MEc|LINE|L1 783716 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 331-53 chr10 66561133 66561385 + 2 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -364777 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 273-391 chr6 88229476 88229723 + 2 NA Intergenic L1MA8|LINE|L1 -62250 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 294-501 chr9 82286532 82286813 + 2 NA Intergenic L1M1|LINE|L1 297900 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 380-60 chr11 15072867 15073142 + 2 NA promoter-TSS (NM_000728) promoter-TSS (NM_000728) -589 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 246-267 chr3 108705781 108705958 + 2 NA Intergenic L1MD3|LINE|L1 51414 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 290-263 chr22 29195539 29195719 + 2 NA Intergenic Intergenic -10267 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 504-257 chr8 82486199 82486502 + 2 NA Intergenic Intergenic -425754 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 386-237 chr3 51132451 51132774 + 2 NA intron (NM_004947, intron 9 of 52) HERVL-int|LTR|ERVL -252679 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 476-47 chr11 39982281 39982537 + 2 NA Intergenic L1MA8|LINE|L1 310721 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 303-499 chr9 103233744 103233931 + 2 NA intron (NR_121578, intron 6 of 9) L2c|LINE|L2 91196 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 228-75 chr12 96952432 96952578 + 2 NA 3' UTR (NM_152905, exon 16 of 16) 3' UTR (NM_152905, exon 16 of 16) 45039 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 380-276 chr4 46367991 46368239 + 2 NA intron (NM_001114175, intron 2 of 8) MLT1I|LTR|ERVL-MaLR 21264 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 599-47 chr18 5998223 5998615 + 2 NA intron (NR_158609, intron 15 of 17) MER92B|LTR|ERV1 -102465 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 237-14 chr1 112779657 112779887 + 2 NA Intergenic L2c|LINE|L2 59205 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 402-84 chr14 63419761 63420016 + 2 NA intron (NR_104104, intron 3 of 12) Tigger12|DNA|TcMar-Tigger 88350 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 357-84 chr12 31905028 31905239 + 2 NA Intergenic Intergenic -17930 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 318-393 chr4 46756939 46757174 + 2 NA intron (NM_130902, intron 2 of 2) L1PB4|LINE|L1 152189 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 227-168 chr2 73164727 73164900 + 2 NA Intergenic MER112|DNA|hAT-Charlie -37761 NM_001134462 344022 Hs.694384 NM_001134462 ENSG00000214513 NOTO - notochord homeobox protein-coding 697-32 chr15 91800828 91801218 + 2 NA Intergenic Intergenic -52685 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 802-24 chr17 61611758 61612238 + 2 NA Intergenic Intergenic -20779 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 227-278 chr5 33160282 33160439 + 2 NA Intergenic Intergenic -69375 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 342-220 chr2 11249467 11249750 + 2 NA intron (NM_001321643, intron 4 of 32) intron (NM_001321643, intron 4 of 32) 94141 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 341-98 chr11 112751707 112751937 + 2 NA Intergenic Intergenic -196020 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 240-87 chr11 87555131 87555315 + 2 NA Intergenic Intergenic 164188 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 153-5 chr1 65093493 65093593 + 2 NA Intergenic MER106A|DNA|hAT-Charlie -25797 NM_001321854 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 366-423 chr7 132353653 132353899 + 2 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 92915 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 253-283 chr4 22640289 22640492 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -52524 NM_001128432 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 307-81 chr11 26092322 26092601 + 2 NA Intergenic Intergenic -96662 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 165-74 chr3 2588910 2589044 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -303238 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 283-248 chr2 167333543 167333797 + 2 NA Intergenic Intergenic 146298 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 362-100 chr11 112462334 112462559 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -19786 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 296-88 chr12 10022633 10022852 + 2 NA intron (NR_120484, intron 2 of 2) MLT1A1|LTR|ERVL-MaLR 7864 NR_120484 102724020 Hs.737731 NR_120484 ENSG00000256803 LOC102724020 - uncharacterized LOC102724020 ncRNA 400-173 chr2 126599136 126599424 + 2 NA Intergenic L1MB4|LINE|L1 -56655 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 1195-2 chr12 4477966 4478960 + 2 NA Intergenic Intergenic -32849 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 347-533 chr8 135437484 135437794 + 2 NA Intergenic Intergenic -19817 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 219-22 chr1 190937549 190937708 + 2 NA Intergenic L1ME2|LINE|L1 290870 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 1021-9 chr2 21533121 21533872 + 2 NA Intergenic AluY|SINE|Alu 177156 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 961-19 chr6 164915553 164916232 + 2 NA Intergenic Intergenic -93829 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 454-4 chr1 37304010 37304277 + 2 NA Intergenic Intergenic 142580 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 580-98 chr20 20984574 20984958 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 121592 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 431-129 chr2 49195488 49195861 + 2 NA Intergenic AluSx1|SINE|Alu -41147 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 189-136 chr4 14281292 14281454 + 2 NA Intergenic MIRb|SINE|MIR 169405 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 390-47 chr10 110338764 110339042 + 2 NA Intergenic Intergenic -33983 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 198-45 chr11 116664572 116664726 + 2 NA Intergenic L1M3f|LINE|L1 25227 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 190-93 chr2 107677864 107678048 + 2 NA Intergenic Intergenic -76156 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 452-77 chr14 49257609 49257957 + 2 NA Intergenic Intergenic 328597 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 366-263 chr22 39806243 39806458 + 2 NA intron (NM_152512, intron 5 of 6) intron (NM_152512, intron 5 of 6) 87410 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 229-52 chr11 8391827 8392051 + 2 NA TTS (NM_001352395) TTS (NM_001352395) -123152 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 468-336 chr9 95901430 95901745 + 2 NA intron (NM_020207, intron 3 of 18) intron (NM_020207, intron 3 of 18) 25579 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 396-254 chr4 71863972 71864273 + 2 NA Intergenic MER4B-int|LTR|ERV1 -58602 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 344-412 chr6 14239222 14239445 + 2 NA Intergenic L1ME3G|LINE|L1 46121 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 323-213 chr19 13421225 13421454 + 2 NA intron (NM_023035, intron 3 of 46) L2c|LINE|L2 85121 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 229-81 chr11 129002207 129002334 + 2 NA intron (NM_001142685, intron 10 of 21) L1MA2|LINE|L1 21918 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 226-54 chr11 42685642 42685860 + 2 NA Intergenic L1MC4|LINE|L1 -432061 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 508-198 chr6 22734567 22734932 + 2 NA Intergenic Intergenic -16825 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 334-485 chr7 6697250 6697489 + 2 NA exon (NM_016265, exon 4 of 5) exon (NM_016265, exon 4 of 5) 9578 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 356-459 chr7 98094260 98094548 + 2 NA Intergenic L1MB7|LINE|L1 -12458 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 331-246 chr2 14810374 14810565 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 177752 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 290-475 chr9 4402733 4402969 + 2 NA Intergenic L1MA2|LINE|L1 -87617 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 258-356 chr6 163277619 163277838 + 2 NA intron (NM_001080379, intron 4 of 4) L1PB1|LINE|L1 46745 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 515-100 chr19 29479419 29479800 + 2 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 46143 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 182-79 chr18 67940381 67940552 + 2 NA Intergenic Intergenic -125644 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 186-98 chr20 39423857 39424015 + 2 NA Intergenic MIR|SINE|MIR -199188 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 214-320 chr8 77059925 77060098 + 2 NA Intergenic Intergenic -58967 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 423-280 chr7 115131534 115131937 + 2 NA intron (NR_126407, intron 2 of 4) HERVL40-int|LTR|ERVL 52777 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 397-78 chr14 34128438 34128762 + 2 NA Intergenic Intergenic -177526 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 327-216 chr18 57671007 57671227 + 2 NA intron (NM_005603, intron 17 of 27) intron (NM_005603, intron 17 of 27) 40786 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 411-285 chr8 19630259 19630575 + 2 NA intron (NR_148898, intron 1 of 9) L1MC2|LINE|L1 -27872 NM_001354491 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 275-52 chr10 103750924 103751169 + 2 NA intron (NR_038940, intron 2 of 2) intron (NR_038940, intron 2 of 2) 4267 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 520-332 chrX 58385227 58385607 + 2 NA Intergenic ALR/Alpha|Satellite|centr -474784 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 258-339 chr5 178928794 178929045 + 2 NA intron (NM_030613, intron 4 of 4) MSTA-int|LTR|ERVL-MaLR -12279 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 341-175 chr15 93697406 93697657 + 2 NA Intergenic L1MEg|LINE|L1 -159029 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 436-82 chr14 46031951 46032326 + 2 NA Intergenic L1MB1|LINE|L1 -32021 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 182-139 chr5 76907072 76907196 + 2 NA intron (NM_130772, intron 4 of 4) L1MD3|LINE|L1 -45911 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 333-146 chr14 56975887 56976190 + 2 NA Intergenic Intergenic 162880 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 296-115 chr12 119064314 119064523 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 82877 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 305-45 chr1 228518797 228519087 + 2 NA Intergenic L1M3|LINE|L1 -6654 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 540-124 chr2 180398357 180398760 + 2 NA Intergenic Intergenic -293546 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 352-111 chr12 84205504 84205847 + 2 NA Intergenic L1PA4|LINE|L1 707124 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 328-326 chr21 16691749 16692051 + 2 NA Intergenic Intergenic 101663 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 247-262 chr3 67194293 67194475 + 2 NA Intergenic Intergenic -31080 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 304-254 chr2 63635624 63635889 + 2 NA Intergenic L1MA9|LINE|L1 46605 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 376-207 chr20 5674309 5674518 + 2 NA Intergenic L1ME3G|LINE|L1 -63407 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 525-261 chr8 96704442 96704813 + 2 NA intron (NM_016134, intron 1 of 7) L2a|LINE|L2 59385 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 280-435 chr9 29836804 29836983 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 571561 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 280-101 chr12 129225442 129225604 + 2 NA intron (NM_133448, intron 4 of 8) MIR|SINE|MIR 16922 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 436 chr1 13601491 13601774 + 2 NA intron (NM_001006624, intron 1 of 5) AluSz6|SINE|Alu 16172 NM_001006624 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 281-420 chr7 87329475 87329684 + 2 NA intron (NR_015381, intron 2 of 2) LTR25-int|LTR|ERV1 15913 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 362-264 chr3 22444463 22444644 + 2 NA Intergenic Intergenic 487414 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 334-286 chr2 145705527 145705818 + 2 NA Intergenic L1MA9|LINE|L1 -881385 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 253-108 chr12 90847445 90847608 + 2 NA Intergenic Intergenic -70497 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 478-219 chr4 125328216 125328579 + 2 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 11985 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 537-84 chr17 47769601 47770065 + 2 NA Intergenic Intergenic 36597 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 380-282 chr4 95366222 95366543 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 182591 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 213-128 chr2 19434480 19434671 + 2 NA Intergenic L1MC3|LINE|L1 -75952 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 321-187 chr14 88798496 88798805 + 2 NA Intergenic Intergenic -5697 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 421-217 chr4 91448896 91449265 + 2 NA intron (NM_001145065, intron 10 of 10) L2a|LINE|L2 828222 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 220-180 chr2 127689186 127689349 + 2 NA Intergenic L1M4b|LINE|L1 -7481 NM_001161404 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 198-34 chr11 10138707 10138848 + 2 NA intron (NM_030962, intron 2 of 39) L1MD2|LINE|L1 155430 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 486-231 chr4 141933018 141933355 + 2 NA Intergenic Intergenic 296603 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 371-423 chrX 25273166 25273424 + 2 NA Intergenic Intergenic -257330 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 260-316 chr4 85966954 85967205 + 2 NA intron (NM_031305, intron 2 of 6) GA-rich|Low_complexity|Low_complexity 37063 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 428-223 chr4 185103953 185104231 + 2 NA intron (NR_147059, intron 8 of 8) L2c|LINE|L2 -39174 NM_001151 291 Hs.246506 NM_001151 ENSG00000151729 SLC25A4 AAC1|ANT|ANT 1|ANT1|MTDPS12|MTDPS12A|PEO2|PEO3|PEOA2|T1 solute carrier family 25 member 4 protein-coding 240-287 chr3 86206479 86206659 + 2 NA Intergenic L2a|LINE|L2 -275374 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 348-11 chr1 80321990 80322281 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -213620 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 564-95 chr2 40680348 40680800 + 2 NA Intergenic Intergenic -168139 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 340-279 chr2 133036530 133036713 + 2 NA intron (NM_207481, intron 6 of 17) L1MA1|LINE|L1 121064 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 353-131 chr13 89592191 89592497 + 2 NA Intergenic AluY|SINE|Alu -27931 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 283-210 chr19 37489446 37489651 + 2 NA TTS (NM_001321992) TTS (NM_001321992) -17391 NM_001013659 390927 Hs.568010 NM_001013659 ENSG00000188227 ZNF793 - zinc finger protein 793 protein-coding 263-96 chr14 37261163 37261345 + 2 NA intron (NM_138731, intron 4 of 13) intron (NM_138731, intron 4 of 13) 63317 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 212-57 chr11 19129514 19129652 + 2 NA intron (NM_001001483, intron 1 of 15) L1MEc|LINE|L1 12415 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 255-272 chr3 147093273 147093518 + 2 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat 171472 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 717-18 chr10 97970800 97971293 + 2 NA intron (NM_001206528, intron 2 of 14) L1ME4c|LINE|L1 59575 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 761-38 chr22 32221672 32222213 + 2 NA intron (NM_014227, intron 13 of 14) AluSq2|SINE|Alu 16827 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 334-570 chr9 91343114 91343352 + 2 NA intron (NM_001698, intron 3 of 9) Tigger2a|DNA|TcMar-Tigger 18691 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 279-240 chr22 35113944 35114154 + 2 NA Intergenic Intergenic 47891 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 242-105 chr14 61882025 61882265 + 2 NA intron (NM_001367656, intron 1 of 7) L2|LINE|L2 -45550 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 135-71 chr8 129671547 129671629 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 8651 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 320 chr1 4602492 4602680 + 2 NA Intergenic Intergenic 31099 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 442-201 chr3 165429170 165429475 + 2 NA intron (NR_125764, intron 3 of 5) LTR37-int|LTR|ERV1 222362 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 334-13 chr1 70937870 70938050 + 2 NA intron (NR_028293, intron 2 of 4) intron (NR_028293, intron 2 of 4) -108546 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 262-265 chr22 24907993 24908189 + 2 NA intron (NM_001098498, intron 20 of 23) L1MB7|LINE|L1 38604 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 304-115 chr12 74246974 74247276 + 2 NA intron (NR_038300, intron 3 of 6) intron (NR_038300, intron 3 of 6) 45506 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 405-275 chr6 46114983 46115325 + 2 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) 14665 NM_001370649 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 325-403 chr4 96928346 96928622 + 2 NA Intergenic HERVL-int|LTR|ERVL -438442 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 218-124 chr17 55109067 55109190 + 2 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -140343 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 527-88 chr14 66044207 66044618 + 2 NA Intergenic L2-3_Crp|LINE|L2 -441959 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 195-47 chr12 9994274 9994416 + 2 NA intron (NM_001099431, intron 4 of 4) intron (NM_001099431, intron 4 of 4) 4955 NM_001099431 51266 Hs.409794 NM_016509 ENSG00000165682 CLEC1B 1810061I13Rik|CLEC2|CLEC2B|PRO1384|QDED721 C-type lectin domain family 1 member B protein-coding 331-533 chr8 89577155 89577462 + 2 NA Intergenic L1MD1|LINE|L1 180403 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 301-64 chr11 48116962 48117187 + 2 NA intron (NM_001098503, intron 3 of 8) intron (NM_001098503, intron 3 of 8) 20292 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 339-508 chr6 151626317 151626642 + 2 NA Intergenic AluSq2|SINE|Alu -64017 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 326-335 chr3 73165746 73165926 + 2 NA Intergenic AluJb|SINE|Alu 104177 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 323-299 chr20 59064649 59064871 + 2 NA Intergenic Intergenic -21914 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 316-226 chr18 59042683 59042865 + 2 NA intron (NR_024021, intron 2 of 4) MIRc|SINE|MIR 7095 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 211-55 chr11 105644765 105644930 + 2 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 34141 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 316-278 chr2 106898113 106898387 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -11141 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 485-55 chr12 62221767 62222222 + 2 NA Intergenic Intergenic -29155 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 247-299 chr4 74477275 74477459 + 2 NA Intergenic MIRb|SINE|MIR 32231 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 267-382 chr6 159378069 159378245 + 2 NA Intergenic Intergenic -5374 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 309-495 chr6 154520460 154520673 + 2 NA Intergenic Intergenic -9881 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 497-80 chr14 83768455 83768877 + 2 NA Intergenic Intergenic 1126034 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 249-467 chrX 64842133 64842309 + 2 NA Intergenic L1PB1|LINE|L1 134229 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 356-452 chr7 51507299 51507506 + 2 NA Intergenic Intergenic -114146 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 352-414 chr5 44982719 44983020 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 173922 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 229-349 chr7 1297986 1298187 + 2 NA Intergenic Intergenic 65214 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 269-143 chr16 7696340 7696558 + 2 NA intron (NM_145893, intron 12 of 13) intron (NM_145893, intron 12 of 13) 363604 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 417-118 chr18 44477701 44477915 + 2 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 53889 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 319-314 chr22 43457360 43457543 + 2 NA intron (NM_001362786, intron 3 of 6) L1M4|LINE|L1 40899 NM_001362786 758 Hs.159538 NM_001044370 ENSG00000186732 MPPED1 239AB|C22orf1|FAM1A metallophosphoesterase domain containing 1 protein-coding 422-172 chr21 31828095 31828333 + 2 NA Intergenic Intergenic -44806 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 219-21 chr1 188040614 188040746 + 2 NA Intergenic HAL1M8|LINE|L1 597052 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 311-55 chr10 68556594 68556788 + 2 NA Intergenic L2a|LINE|L2 -3646 NM_030625 80312 Hs.258855 NM_030625 ENSG00000138336 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 390-327 chr6 81920193 81920460 + 2 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) 13154 NR_149136 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 294-200 chr2 28673874 28674075 + 2 NA Intergenic Intergenic 62231 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 361-27 chr1 231364636 231364932 + 2 NA 3' UTR (NM_022051, exon 5 of 5) 3' UTR (NM_022051, exon 5 of 5) 26491 NM_001261462 83932 Hs.554892 NM_032018 ENSG00000010072 SPRTN C1orf124|DVC1|PRO4323|spartan SprT-like N-terminal domain protein-coding 211-104 chr16 69582827 69583009 + 2 NA intron (NM_138714, intron 2 of 15) L1M4|LINE|L1 16952 NM_173215 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 515-62 chr13 99932624 99932985 + 2 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) 24361 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 314-352 chr21 27688950 27689207 + 2 NA Intergenic L1M4|LINE|L1 -33301 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 261-317 chr5 118375162 118375418 + 2 NA intron (NR_104610, intron 9 of 9) MIR|SINE|MIR 92716 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 159-93 chr8 92081147 92081254 + 2 NA intron (NM_175634, intron 1 of 11) MIRb|SINE|MIR 14030 NM_175635 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 369-181 chr19 57150440 57150805 + 2 NA Intergenic Intergenic -5420 NM_052882 114026 Hs.348622 NM_052882 ENSG00000141946 ZIM3 ZNF264|ZNF657 zinc finger imprinted 3 protein-coding 253-111 chr12 125564227 125564433 + 2 NA intron (NM_052907, intron 4 of 8) intron (NM_052907, intron 4 of 8) -58122 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 529-104 chr2 77335303 77335706 + 2 NA intron (NR_146416, intron 1 of 1) L2a|LINE|L2 186872 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 546-14 chr1 239164408 239164755 + 2 NA Intergenic Intergenic -221987 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 335-382 chr4 51930195 51930405 + 2 NA Intergenic Intergenic 86721 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 237-245 chr3 89553022 89553230 + 2 NA Intergenic Intergenic 445505 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 220-12 chr1 105012958 105013094 + 2 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 605909 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 480-20 chr10 15686216 15686508 + 2 NA intron (NM_001291494, intron 3 of 28) intron (NM_001291494, intron 3 of 28) 33560 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 217-342 chr7 7988177 7988312 + 2 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 19448 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 200-238 chr6 63191951 63192099 + 2 NA Intergenic MLT2B4|LTR|ERVL 127952 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 350-248 chr2 148604037 148604317 + 2 NA Intergenic L1MC|LINE|L1 -40574 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 448-94 chr16 78911221 78911607 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 689323 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 596-31 chr10 90287977 90288401 + 2 NA Intergenic Intergenic 252616 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 135-15 chr13 88908076 88908176 + 2 NA Intergenic Intergenic 281273 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 292-139 chr14 54039363 54039578 + 2 NA Intergenic Intergenic -82579 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 214-33 chr10 19072629 19072803 + 2 NA intron (NM_001142308, intron 2 of 39) intron (NM_001142308, intron 2 of 39) 23915 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 220-399 chrX 83065857 83066011 + 2 NA Intergenic MLT2B3|LTR|ERVL -442356 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 141-58 chr3 114134884 114135003 + 2 NA intron (NM_000796, intron 5 of 6) L1MA4|LINE|L1 43833 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 333-20 chr1 82460860 82461168 + 2 NA Intergenic Intergenic -442169 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 409-162 chr2 237302437 237302823 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 111534 NM_057166 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 424-79 chr15 68005135 68005448 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -48888 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 481-202 chr3 107117530 107117834 + 2 NA intron (NR_028303, intron 2 of 3) intron (NR_028303, intron 2 of 3) 122956 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 337-103 chr11 128383134 128383358 + 2 NA Intergenic Intergenic 139064 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 483-285 chr9 32126658 32127070 + 2 NA Intergenic Intergenic -257739 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 223-29 chr10 22559508 22559650 + 2 NA intron (NM_005028, intron 6 of 9) intron (NM_005028, intron 6 of 9) -121650 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 204-194 chr3 53686969 53687139 + 2 NA intron (NM_000720, intron 8 of 48) L1MEf|LINE|L1 159365 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 263-32 chr1 224072627 224072867 + 2 NA Intergenic HAL1|LINE|L1 -41364 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 567-171 chr7 130449281 130449675 + 2 NA Intergenic AluSx|SINE|Alu -8268 NM_001257159 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 133-37 chr2 84584665 84584733 + 2 NA intron (NM_001370, intron 15 of 76) intron (NM_001370, intron 15 of 76) 68244 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 284-328 chr5 110980397 110980542 + 2 NA Intergenic L1M1|LINE|L1 -89611 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 378-411 chr7 77723925 77724282 + 2 NA intron (NM_198467, intron 1 of 7) intron (NM_198467, intron 1 of 7) -26758 NR_038361 100505854 Hs.72451 NR_038361 ENSG00000214293 APTR RSBN1L-AS1 Alu-mediated CDKN1A/p21 transcriptional regulator ncRNA 308-41 chr1 222307915 222308077 + 2 NA Intergenic Intergenic 240108 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 224-164 chr2 192115874 192116014 + 2 NA intron (NM_001305134, intron 4 of 9) L1MA9|LINE|L1 78989 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 331-36 chr1 221461765 221462028 + 2 NA Intergenic Intergenic -125600 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 335-448 chr5 161441320 161441564 + 2 NA intron (NM_000813, intron 5 of 9) L1MA1|LINE|L1 106682 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 330-155 chr14 51868843 51869155 + 2 NA intron (NM_001243774, intron 1 of 2) intron (NM_001243774, intron 1 of 2) 8387 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 336-261 chr2 42920786 42921037 + 2 NA Intergenic Intergenic 118632 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 266-382 chr6 152707743 152707950 + 2 NA intron (NM_025107, intron 1 of 1) L1MA9|LINE|L1 9951 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 1063-5 chr11 50549578 50550371 + 2 NA Intergenic ALR/Alpha|Satellite|centr 140827 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 440-110 chr19 52378120 52378477 + 2 NA intron (NM_001145434, intron 3 of 3) intron (NM_001145434, intron 3 of 3) 8375 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 341-384 chr4 83258815 83259132 + 2 NA Intergenic Intergenic 25822 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 211-50 chr11 57392710 57392881 + 2 NA Intergenic L2c|LINE|L2 -2145 NM_001243245 5553 Hs.512633 NM_002728 ENSG00000186652 PRG2 BMPG|MBP|MBP1|proMBP proteoglycan 2, pro eosinophil major basic protein protein-coding 337-172 chr15 55893688 55893922 + 2 NA intron (NM_001329212, intron 5 of 28) intron (NM_001329212, intron 5 of 28) 23326 NM_001284338 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 313-107 chr12 26250469 26250725 + 2 NA Intergenic Intergenic 55024 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 300-378 chr5 165220251 165220501 + 2 NA Intergenic L1MEf|LINE|L1 750097 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 305-476 chr6 72264879 72265144 + 2 NA exon (NM_001350434, exon 15 of 23) exon (NM_001350434, exon 15 of 23) 48070 NM_001350471 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 292-92 chr12 16329762 16329982 + 2 NA Intergenic Intergenic -17270 NM_145792 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 333-55 chr10 49215185 49215423 + 2 NA Intergenic L1MEg|LINE|L1 -26913 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 356-515 chrX 58154678 58154952 + 2 NA Intergenic ALR/Alpha|Satellite|centr -244182 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 609-87 chr4 42898895 42899279 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 5821 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 295-307 chr3 120838516 120838766 + 2 NA Intergenic Intergenic -2284 NR_135571 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 228-140 chr18 5455880 5456049 + 2 NA intron (NM_001281535, intron 5 of 21) intron (NM_001281535, intron 5 of 21) 84592 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 607-96 chr3 31424061 31424432 + 2 NA Intergenic Intergenic -108679 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 265-57 chr11 25629137 25629387 + 2 NA Intergenic LTR41C|LTR|ERVL -559861 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 291-472 chr8 128416874 128417059 + 2 NA intron (NR_121672, intron 5 of 7) intron (NR_121672, intron 5 of 7) 147713 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 569-135 chr4 74408656 74409074 + 2 NA Intergenic Intergenic -36271 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 472-211 chr3 124508656 124509047 + 2 NA intron (NM_001024660, intron 33 of 59) L1ME3B|LINE|L1 -75807 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 342-446 chr6 40202769 40203045 + 2 NA Intergenic L1MA9|LINE|L1 153099 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 343-31 chr1 192309699 192310001 + 2 NA Intergenic L1ME3|LINE|L1 -7142 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 508-14 chr1 163983209 163983676 + 2 NA Intergenic MIRb|SINE|MIR -560251 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 291-194 chr19 31259662 31259873 + 2 NA intron (NR_138036, intron 1 of 4) intron (NR_138036, intron 1 of 4) 89669 NM_020856 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 243-188 chr19 36435454 36435688 + 2 NA Intergenic AluSg|SINE|Alu 14397 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 456-78 chr13 62661622 62661856 + 2 NA Intergenic L2a|LINE|L2 134953 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 529-55 chr12 125908347 125908736 + 2 NA Intergenic Intergenic 74833 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 265-372 chr7 125840513 125840665 + 2 NA Intergenic Intergenic -576298 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 374-378 chr8 46322134 46322367 + 2 NA Intergenic ALR/Alpha|Satellite|centr 295393 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 432-199 chr4 62263109 62263457 + 2 NA Intergenic Intergenic -101518 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 271-393 chr6 151574819 151575058 + 2 NA intron (NM_025059, intron 6 of 10) intron (NM_025059, intron 6 of 10) 80921 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 290-326 chr4 171515177 171515438 + 2 NA Intergenic Intergenic 123456 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 188-141 chr3 182206278 182206423 + 2 NA Intergenic Intergenic 253986 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 297-523 chrX 39123354 39123602 + 2 NA Intergenic Intergenic 203884 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 301-118 chr14 47588051 47588233 + 2 NA intron (NM_001113498, intron 1 of 16) L1MB7|LINE|L1 86812 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 508-254 chr9 25212849 25213341 + 2 NA Intergenic Intergenic 465763 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 202-190 chr4 97228888 97229024 + 2 NA Intergenic LTR16C|LTR|ERVL -137970 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 509-192 chr5 62042683 62042976 + 2 NA Intergenic Intergenic -263333 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 294-248 chr2 200524081 200524328 + 2 NA Intergenic Intergenic -1938 NM_001160046 151246 Hs.655182 NM_152524 ENSG00000163535 SGO2 SGOL2|TRIPIN shugoshin 2 protein-coding 340-316 chr20 31854065 31854331 + 2 NA intron (NM_001320479, intron 6 of 9) intron (NM_001320479, intron 6 of 9) -8594 NM_004118 2307 Hs.516971 NM_004118 ENSG00000179772 FOXS1 FKHL18|FREAC10 forkhead box S1 protein-coding 217-77 chr11 93474595 93474761 + 2 NA Intergenic Intergenic 68713 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 406-51 chr11 41959558 41959868 + 2 NA Intergenic L1PREC2|LINE|L1 125745 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 463-175 chr22 43601135 43601450 + 2 NA intron (NM_198856, intron 20 of 29) UCON33|DNA|TcMar-Tigger 85038 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 280-55 chr10 73306391 73306585 + 2 NA intron (NM_001367801, intron 13 of 27) L1M4|LINE|L1 52266 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 387-234 chr3 131248899 131249161 + 2 NA intron (NM_001353036, intron 14 of 14) intron (NM_001353036, intron 14 of 14) -112815 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 154-23 chr12 38546120 38546228 + 2 NA Intergenic Intergenic 229400 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 534-132 chr2 166214399 166214692 + 2 NA intron (NM_001365536, intron 24 of 26) AluY|SINE|Alu -65384 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 320-326 chr22 27740679 27740943 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 60945 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 187-173 chr8 83008283 83008444 + 2 NA Intergenic Intergenic 96259 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 337-78 chr11 22983900 22984142 + 2 NA Intergenic Intergenic -123547 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 419-99 chr15 33274450 33274745 + 2 NA Intergenic L1MA1|LINE|L1 -27042 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 314-343 chr20 42806856 42807069 + 2 NA intron (NM_133170, intron 2 of 31) L1M6|LINE|L1 121479 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 336-220 chr18 4220907 4221171 + 2 NA intron (NM_001242761, intron 1 of 11) Tigger3a|DNA|TcMar-Tigger -43563 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 249-349 chr6 4663466 4663618 + 2 NA Intergenic Intergenic -42596 NM_001368125 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 429-152 chr2 78029203 78029578 + 2 NA intron (NR_110288, intron 1 of 3) L1MC1|LINE|L1 -59340 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 388-209 chr22 33864011 33864370 + 2 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 56238 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 256-390 chr7 53486047 53486280 + 2 NA Intergenic Intergenic 325768 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 227-389 chr9 26344733 26344920 + 2 NA Intergenic L1MA9|LINE|L1 278151 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 218-332 chr8 107769486 107769700 + 2 NA Intergenic Intergenic -271675 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 748-93 chrX 117676422 117677126 + 2 NA Intergenic L1PA15|LINE|L1 296964 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 314-76 chr10 94892063 94892235 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -46509 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 253-136 chr14 79008411 79008598 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -191478 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 256-232 chr20 12540353 12540549 + 2 NA Intergenic L1M1|LINE|L1 396512 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 841-35 chr6 40669923 40670594 + 2 NA Intergenic Intergenic -82894 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 249-253 chr3 8300245 8300474 + 2 NA intron (NR_033378, intron 3 of 3) MIRc|SINE|MIR 201299 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 739-30 chr19 39695067 39695509 + 2 NA Intergenic L1ME4b|LINE|L1 -9193 NM_203471 56891 Hs.24236 NM_020129 ENSG00000006659 LGALS14 CLC2|PPL13 galectin 14 protein-coding 351-130 chr14 66316001 66316184 + 2 NA Intergenic L1MA5|LINE|L1 -170279 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 354-64 chr10 123762487 123762681 + 2 NA intron (NM_198148, intron 10 of 13) L1MC5|LINE|L1 96229 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 495-242 chr8 3375221 3375588 + 2 NA intron (NM_033225, intron 18 of 69) intron (NM_033225, intron 18 of 69) -646953 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 234-350 chr6 157099529 157099712 + 2 NA intron (NM_020732, intron 6 of 19) intron (NM_020732, intron 6 of 19) 63193 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 356-195 chr17 59410124 59410431 + 2 NA Intergenic Intergenic 44194 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 667-74 chr4 43400202 43400683 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 92101 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 241-65 chr11 41773468 41773615 + 2 NA intron (NR_120584, intron 2 of 5) AluSq2|SINE|Alu 58973 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 325-44 chr1 239923754 239923971 + 2 NA Intergenic Intergenic -23990 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 512-137 chr2 187182606 187183037 + 2 NA Intergenic HERVL-int|LTR|ERVL 265431 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 348-509 chr8 23577612 23577900 + 2 NA Intergenic Intergenic 48800 NM_001317814 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 224-322 chr8 77318841 77318995 + 2 NA Intergenic Intergenic -131779 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 312-327 chr3 54521974 54522153 + 2 NA intron (NM_018398, intron 5 of 37) L1MB8|LINE|L1 117794 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 223-261 chr4 167690744 167690918 + 2 NA Intergenic Intergenic -401706 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 242-288 chr5 8795748 8795971 + 2 NA Intergenic Intergenic -43873 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 408-19 chr1 118784509 118784844 + 2 NA Intergenic MIRc|SINE|MIR 203667 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 389-176 chr2 78837425 78837745 + 2 NA Intergenic Intergenic -188117 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 336-168 chr14 68133990 68134289 + 2 NA intron (NM_133509, intron 7 of 10) L1MD2|LINE|L1 310547 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 257-13 chr1 103217773 103217954 + 2 NA Intergenic Intergenic -109341 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 432-159 chr21 19242639 19243010 + 2 NA Intergenic Intergenic -483012 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 374-372 chr8 17482144 17482509 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -14762 NM_001008539 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 395-88 chr14 45780870 45781130 + 2 NA Intergenic L1PA13|LINE|L1 -65398 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 341-316 chr22 34258818 34259147 + 2 NA Intergenic HAL1|LINE|L1 -336094 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 281-230 chr2 146592840 146593018 + 2 NA Intergenic Intergenic 5872 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 249-24 chr1 178417105 178417323 + 2 NA intron (NM_004841, intron 2 of 15) L1MCa|LINE|L1 75763 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 254-203 chr2 178921000 178921192 + 2 NA intron (NM_001316745, intron 6 of 11) intron (NM_001316745, intron 6 of 11) -113673 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 1256-8 chr5 95970169 95971163 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 8665 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 282-50 chr10 71421500 71421733 + 2 NA intron (NM_052836, intron 1 of 12) intron (NM_052836, intron 1 of 12) 24682 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 184-101 chr2 170306952 170307099 + 2 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 43918 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 376-332 chr5 124021487 124021765 + 2 NA Intergenic Intergenic 416894 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 200-277 chr8 124801521 124801695 + 2 NA Intergenic LTR33A|LTR|ERVL -20377 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 249-155 chr17 71326521 71326739 + 2 NA Intergenic Intergenic -124451 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 339-324 chr20 56962607 56962817 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -250984 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 361-438 chr8 65508261 65508523 + 2 NA Intergenic Intergenic 54274 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 265-316 chr5 117502356 117502596 + 2 NA intron (NR_046089, intron 3 of 5) intron (NR_046089, intron 3 of 5) 86964 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 339-195 chr16 51228588 51228886 + 2 NA intron (NR_039672, intron 5 of 6) intron (NR_039672, intron 5 of 6) -77465 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 257-99 chr13 33240463 33240689 + 2 NA intron (NM_001243476, intron 5 of 17) L1MB2|LINE|L1 -34526 NM_001243474 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 230-156 chr18 64394256 64394480 + 2 NA intron (NR_033881, intron 5 of 9) L1MEc|LINE|L1 -134313 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 395-222 chr3 94730547 94730926 + 2 NA Intergenic HERVL-int|LTR|ERVL -207527 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 340-63 chr10 125238893 125239184 + 2 NA Intergenic L1ME3B|LINE|L1 -78008 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 227-352 chr7 78160716 78160899 + 2 NA intron (NM_001301128, intron 14 of 20) intron (NM_001301128, intron 14 of 20) -186435 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 318-285 chr2 124655835 124656146 + 2 NA intron (NM_130773, intron 13 of 23) (AGAA)n|Simple_repeat|Simple_repeat 630703 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 374-38 chr10 80877808 80878165 + 2 NA Intergenic L1PREC2|LINE|L1 228189 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 350-331 chr3 178834655 178834945 + 2 NA intron (NM_181361, intron 4 of 4) intron (NM_181361, intron 4 of 4) 25605 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 254-281 chr4 102029542 102029721 + 2 NA intron (NM_017935, intron 9 of 16) intron (NM_017935, intron 9 of 16) 215789 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 161-6 chr1 111988440 111988575 + 2 NA intron (NM_172198, intron 1 of 6) intron (NM_172198, intron 1 of 6) 648 NM_172198 3752 Hs.666367 NM_004980 ENSG00000171385 KCND3 BRGDA9|KCND3L|KCND3S|KSHIVB|KV4.3|SCA19|SCA22 potassium voltage-gated channel subfamily D member 3 protein-coding 534-201 chr5 121106561 121107055 + 2 NA Intergenic MER52C|LTR|ERV1 -215742 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 322-304 chr21 33219394 33219613 + 2 NA Intergenic L1MC4|LINE|L1 -10392 NM_001289125 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 318-15 chr1 61317217 61317388 + 2 NA intron (NM_001134673, intron 3 of 10) intron (NM_001134673, intron 3 of 10) -63784 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 123-33 chr3 190447352 190447441 + 2 NA intron (NM_207316, intron 2 of 4) intron (NM_207316, intron 2 of 4) 2480 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 325-421 chr5 3232702 3232907 + 2 NA Intergenic Intergenic 54969 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 294-150 chr16 49127775 49128036 + 2 NA Intergenic L2a|LINE|L2 153933 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 651-68 chr2 136691762 136692315 + 2 NA Intergenic L1ME3B|LINE|L1 -73507 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 328-190 chr16 5591190 5591390 + 2 NA Intergenic AluSq2|SINE|Alu 24960 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 277-168 chr19 14867015 14867161 + 2 NA Intergenic Intergenic 14267 NM_030901 26333 Hs.247717 NM_030901 ENSG00000185385 OR7A17 BC85395_4|HTPCRX19 olfactory receptor family 7 subfamily A member 17 protein-coding 438-44 chr11 7460219 7460551 + 2 NA intron (NR_103855, intron 2 of 4) intron (NR_103855, intron 2 of 4) 5450 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 623-79 chr22 46966478 46966948 + 2 NA intron (NR_104292, intron 10 of 13) intron (NR_104292, intron 10 of 13) -50671 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 210-212 chr4 164074839 164075035 + 2 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) 122774 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 166-40 chr17 83142225 83142383 + 2 NA Intergenic L1MA7|LINE|L1 61158 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 231-306 chr6 44267964 44268130 + 2 NA Intergenic Intergenic -2259 NM_004556 4794 Hs.458276 NM_004556 ENSG00000146232 NFKBIE IKBE NFKB inhibitor epsilon protein-coding 311-95 chr12 19823961 19824197 + 2 NA Intergenic L2b|LINE|L2 -190606 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 261-365 chr7 118444955 118445126 + 2 NA Intergenic L1MCb|LINE|L1 220336 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 315-396 chr5 131910586 131910805 + 2 NA intron (NM_001303622, intron 8 of 12) L1MA2|LINE|L1 34968 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 303-79 chr11 112445355 112445601 + 2 NA Intergenic L1MEc|LINE|L1 -36754 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 206-139 chr20 14119417 14119610 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 123997 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 421-236 chr5 45783173 45783515 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -86964 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 239-140 chr18 5778055 5778231 + 2 NA intron (NR_038839, intron 3 of 4) MIR3|SINE|MIR 29324 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 350-501 chr8 14817214 14817425 + 2 NA intron (NM_139167, intron 1 of 7) L1MA6|LINE|L1 36191 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 269-279 chr4 76361474 76361724 + 2 NA intron (NM_001042784, intron 12 of 23) MSTA|LTR|ERVL-MaLR 45706 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 319-358 chr4 19296590 19296835 + 2 NA Intergenic Intergenic -955193 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 415-111 chr19 44515754 44515992 + 2 NA intron (NM_001102599, intron 5 of 10) AluJb|SINE|Alu 13802 NM_001102599 125931 Hs.689632 NM_198444 ENSG00000273777 CEACAM20 UNQ9366 carcinoembryonic antigen related cell adhesion molecule 20 protein-coding 609-107 chr5 110200866 110201350 + 2 NA Intergenic Intergenic 312807 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 252-195 chr2 80975256 80975451 + 2 NA Intergenic Intergenic 491593 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 348-418 chr5 95613645 95613860 + 2 NA Intergenic L1ME4a|LINE|L1 -6335 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 408-328 chr8 14212311 14212669 + 2 NA intron (NM_139167, intron 4 of 7) L1MDa|LINE|L1 582800 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 138-32 chr17 76744270 76744367 + 2 NA intron (NM_001353019, intron 7 of 13) intron (NM_001353019, intron 7 of 13) 6817 NM_001353019 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 242-104 chr14 61313054 61313260 + 2 NA Intergenic Intergenic -8286 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 374-16 chr1 173170281 173170495 + 2 NA Intergenic L1MA9|LINE|L1 35144 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 573-60 chr13 74706539 74706972 + 2 NA Intergenic Intergenic 153912 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 456-113 chr15 81445879 81446302 + 2 NA Intergenic L1MC1|LINE|L1 -71877 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 398-378 chr9 28892829 28893099 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -4009 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 379-278 chr5 125073862 125074150 + 2 NA intron (NR_109882, intron 2 of 5) L1MA9|LINE|L1 37175 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 333-21 chr1 90719131 90719299 + 2 NA Intergenic Intergenic -1913 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 253-145 chr16 3967307 3967514 + 2 NA intron (NM_001116, intron 10 of 10) AluJr|SINE|Alu -16966 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 476-287 chrX 71884558 71884885 + 2 NA Intergenic Intergenic -26367 NM_001013627 340527 Hs.397836 NM_001013627 ENSG00000204131 NHSL2 - NHS like 2 protein-coding 364-53 chr10 31712715 31712999 + 2 NA Intergenic L1MEf|LINE|L1 196069 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 175-11 chr1 115875359 115875502 + 2 NA Intergenic L1MA7|LINE|L1 -34304 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 314-485 chr5 163174123 163174412 + 2 NA Intergenic L2c|LINE|L2 -263304 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 226-229 chr3 94755116 94755287 + 2 NA Intergenic Intergenic -183062 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 499-259 chr8 58525216 58525596 + 2 NA Intergenic L1M5|LINE|L1 -25243 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 304-133 chr14 21709186 21709485 + 2 NA Intergenic Intergenic -38318 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 512-55 chr11 113180274 113180681 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 93424 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 513-110 chr18 20933813 20934173 + 2 NA Intergenic ALR/Alpha|Satellite|centr 177820 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 362-371 chr6 18419538 18419832 + 2 NA intron (NM_182757, intron 2 of 7) L2|LINE|L2 32335 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 418-90 chr16 67070878 67071232 + 2 NA intron (NM_001755, intron 4 of 5) intron (NM_001755, intron 4 of 5) -38886 NM_001320542 80262 Hs.513666 NM_025187 ENSG00000125149 C16orf70 C16orf6|LIN10|lin-10 chromosome 16 open reading frame 70 protein-coding 596-103 chr2 153678080 153678452 + 2 NA Intergenic L1PA15|LINE|L1 -193656 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 324-186 chr15 86126182 86126417 + 2 NA intron (NM_152336, intron 1 of 24) intron (NM_152336, intron 1 of 24) -9582 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 438-58 chr11 111425382 111425655 + 2 NA Intergenic L2c|LINE|L2 -7332 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 236-245 chr3 192942205 192942371 + 2 NA Intergenic Intergenic -24432 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 314-385 chr3 109829660 109829826 + 2 NA Intergenic Intergenic 226915 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 451-35 chr11 40208414 40208739 + 2 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 84554 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 376-389 chr7 106414484 106414823 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -129670 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 282-35 chr10 19027686 19027909 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21004 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 333-321 chr21 27792911 27793129 + 2 NA Intergenic L1PA11|LINE|L1 70641 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 312-422 chr5 97353998 97354178 + 2 NA Intergenic L1PA13|LINE|L1 -150608 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 396-36 chr1 225279506 225279824 + 2 NA intron (NM_001367479, intron 54 of 85) Zaphod|DNA|hAT-Tip100 148373 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 155-61 chr21 28877579 28877731 + 2 NA intron (NM_013240, intron 5 of 5) intron (NM_013240, intron 5 of 5) 7712 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 446-251 chr5 150863542 150863816 + 2 NA intron (NM_001346557, intron 2 of 3) MIRc|SINE|MIR 17156 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 385-15 chr1 201060531 201060800 + 2 NA exon (NM_000069, exon 26 of 44) exon (NM_000069, exon 26 of 44) -36951 NM_001252103 23046 Hs.169182 NM_017596 ENSG00000116852 KIF21B - kinesin family member 21B protein-coding 296-164 chr16 3381956 3382214 + 2 NA TTS (NM_001324341) TTS (NM_001324341) -9417 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 185-15 chr1 194417848 194418027 + 2 NA Intergenic L1ME3|LINE|L1 1113192 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 703-47 chr2 111658061 111658597 + 2 NA Intergenic AluJb|SINE|Alu 112805 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 222-199 chr2 192961239 192961404 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 211476 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 235-195 chr2 213703186 213703361 + 2 NA intron (NR_047660, intron 9 of 14) MLT1I|LTR|ERVL-MaLR -54794 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 357-50 chr10 122755640 122755836 + 2 NA promoter-TSS (NR_003570) promoter-TSS (NR_003570) -956 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 341-565 chr9 87898708 87898932 + 2 NA intron (NR_149022, intron 3 of 3) L1M4c|LINE|L1 15943 NM_178828 286234 Hs.130672 NM_178828 ENSG00000177992 SPATA31E1 C9orf79|FAM75E1 SPATA31 subfamily E member 1 protein-coding 314-564 chr8 70524192 70524361 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 53142 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 288-358 chr6 26649332 26649603 + 2 NA intron (NM_001242799, intron 1 of 2) L1MC1|LINE|L1 10279 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 317-255 chr2 155560371 155560564 + 2 NA Intergenic L2a|LINE|L2 694464 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 269-310 chr5 41800007 41800258 + 2 NA intron (NM_001364299, intron 12 of 17) intron (NM_001364299, intron 12 of 17) 43525 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 301-388 chr6 2102746 2102953 + 2 NA intron (NM_001253846, intron 4 of 10) intron (NM_001253846, intron 4 of 10) 73142 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 439-29 chr10 53628914 53629210 + 2 NA Intergenic L2b|LINE|L2 -857168 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 256-360 chr6 65363644 65363811 + 2 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 62309 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 209-143 chr2 3989067 3989183 + 2 NA Intergenic L1M5|LINE|L1 14964 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 302-474 chr8 134527405 134527679 + 2 NA intron (NM_020863, intron 12 of 15) intron (NM_020863, intron 12 of 15) -70529 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 326-160 chr15 26421118 26421353 + 2 NA Intergenic L1MDb|LINE|L1 207855 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 377-362 chr7 27398522 27398797 + 2 NA Intergenic Intergenic -151430 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 234-271 chr4 55199832 55200012 + 2 NA Intergenic Ricksha_b|DNA|MULE-MuDR -74327 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 302-42 chr10 27642312 27642483 + 2 NA Intergenic L1M4c|LINE|L1 -102218 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 630-57 chr2 110123404 110123957 + 2 NA 3' UTR (NM_001128179, exon 18 of 18) 3' UTR (NM_001128179, exon 18 of 18) -7114 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 487-238 chr5 133517600 133518036 + 2 NA intron (NM_015082, intron 3 of 15) MLT2C2|LTR|ERVL -90112 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 363-472 chr9 37398476 37398698 + 2 NA Intergenic Intergenic -24109 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 527-154 chr20 18353069 18353556 + 2 NA Intergenic Intergenic -25737 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 393-118 chr16 59799567 59799953 + 2 NA Intergenic L1PB|LINE|L1 -44569 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 388-242 chr3 194851232 194851450 + 2 NA Intergenic Intergenic -82632 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 305-352 chr3 89823149 89823384 + 2 NA Intergenic Intergenic 715645 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 426-177 chr3 34948473 34948837 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 445368 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 376-299 chr4 136593662 136593982 + 2 NA Intergenic L1M1|LINE|L1 -599934 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 864-34 chr5 26706637 26707230 + 2 NA Intergenic L1M3|LINE|L1 331653 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 307-84 chr11 70511976 70512195 + 2 NA intron (NM_133266, intron 2 of 10) HAL1|LINE|L1 113556 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 513-285 chr8 111121996 111122465 + 2 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) -94797 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 568-149 chr4 64284713 64285101 + 2 NA intron (NM_001363796, intron 9 of 11) ERV3-16A3_I-int|LTR|ERVL 124543 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 581-157 chr7 46387820 46388354 + 2 NA Intergenic L3|LINE|CR1 309035 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 315-166 chr16 12984377 12984665 + 2 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 82923 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 384-329 chr6 149446029 149446336 + 2 NA TTS (NM_207360) TTS (NM_207360) 38832 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 368-192 chr17 62119660 62119930 + 2 NA Intergenic Intergenic -54517 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 227-150 chr19 11717804 11717962 + 2 NA Intergenic L1M3|LINE|L1 21063 NM_001297610 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 250-167 chr17 72005145 72005335 + 2 NA Intergenic Intergenic 20739 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 547-115 chr2 188383317 188383804 + 2 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 86068 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 350-353 chr4 74953480 74953805 + 2 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) 16720 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 635-29 chr14 51694480 51694994 + 2 NA intron (NM_001042481, intron 3 of 14) intron (NM_001042481, intron 3 of 14) -22546 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 553-147 chr22 28509033 28509499 + 2 NA intron (NM_001145418, intron 2 of 22) L1PA11|LINE|L1 49397 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 583-85 chr2 46410548 46411011 + 2 NA Intergenic Intergenic -16612 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 244-373 chr8 90788001 90788206 + 2 NA Intergenic Intergenic -3672 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 411-109 chr16 56068713 56068978 + 2 NA Intergenic Intergenic -112814 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 250-332 chr5 15848710 15848880 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -86387 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 195-260 chr9 91569129 91569294 + 2 NA Intergenic Intergenic -67040 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 465-317 chr9 105570439 105570683 + 2 NA intron (NM_001351498, intron 1 of 9) intron (NM_001351498, intron 1 of 9) 12430 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 191-202 chr7 84773912 84774071 + 2 NA Intergenic L1M5|LINE|L1 241515 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 172-32 chr13 63009518 63009661 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -202230 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 264-8 chr1 95430815 95431009 + 2 NA Intergenic Intergenic -43825 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 395-348 chr8 135145384 135145693 + 2 NA Intergenic HAL1|LINE|L1 -88593 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 339-123 chr12 23823070 23823239 + 2 NA intron (NM_152989, intron 6 of 17) L1PA7|LINE|L1 126516 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 321-388 chr3 136459201 136459490 + 2 NA intron (NM_005862, intron 13 of 33) L1MA4|LINE|L1 209005 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 298-293 chr3 55695833 55696042 + 2 NA intron (NR_132749, intron 15 of 17) MER103C|DNA|hAT-Charlie -36468 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 245-86 chr11 109689607 109689796 + 2 NA Intergenic L1MB7|LINE|L1 267511 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 246-60 chr10 125318815 125319032 + 2 NA Intergenic L1ME3A|LINE|L1 -157893 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 259-166 chr18 5403699 5403912 + 2 NA intron (NM_001281533, intron 15 of 20) intron (NM_001281533, intron 15 of 20) -106752 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 203-19 chr10 12946034 12946230 + 2 NA intron (NM_001282658, intron 6 of 6) MER57A-int|LTR|ERV1 55581 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 270-221 chr21 37374975 37375187 + 2 NA intron (NM_001347723, intron 1 of 10) intron (NM_001347723, intron 1 of 10) 7524 NM_101395 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 285-60 chr11 35855307 35855561 + 2 NA Intergenic Intergenic -88547 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 419-316 chrX 99436478 99436862 + 2 NA Intergenic L1PA16|LINE|L1 973603 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 365-315 chr5 30703760 30704071 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -489771 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 282-271 chr21 28585993 28586171 + 2 NA Intergenic Intergenic 46764 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 499-111 chr2 21882261 21882623 + 2 NA Intergenic Intergenic -171790 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 279-443 chr9 96834239 96834402 + 2 NA intron (NM_001346995, intron 2 of 3) THE1C|LTR|ERVL-MaLR 20194 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 258-229 chr20 32366073 32366299 + 2 NA intron (NM_001363734, intron 1 of 10) intron (NM_001363734, intron 1 of 10) 7121 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 240-289 chr3 97211325 97211533 + 2 NA intron (NM_001080448, intron 3 of 17) MLT1A0|LTR|ERVL-MaLR -228178 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 520-267 chr6 160319639 160320107 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -28505 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 158-31 chr14 100454837 100454957 + 2 NA intron (NM_001350949, intron 2 of 6) L1MEf|LINE|L1 78412 NM_024515 79446 Hs.497599 NM_024515 ENSG00000176473 WDR25 C14orf67 WD repeat domain 25 protein-coding 327-136 chr13 66138936 66139118 + 2 NA Intergenic Intergenic -79223 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 408-94 chr13 25645606 25645931 + 2 NA intron (NM_016529, intron 24 of 36) L1ME3F|LINE|L1 176994 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 296 chr1 4438787 4438976 + 2 NA Intergenic Intergenic 26830 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 417-87 chr14 79465472 79465703 + 2 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 186207 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 525-84 chr16 49673914 49674317 + 2 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) -9791 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 287-441 chr9 90012055 90012295 + 2 NA Intergenic Intergenic 11360 NR_036253 100422963 NR_036253 ENSG00000263967 MIR4290 - microRNA 4290 ncRNA 231-92 chr14 44004840 44004996 + 2 NA Intergenic AluJb|SINE|Alu 502365 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 777-56 chr5 106015623 106016233 + 2 NA Intergenic Intergenic 916454 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 338-593 chr9 84786114 84786339 + 2 NA intron (NM_001369547, intron 13 of 13) intron (NM_001369547, intron 13 of 13) 80325 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 396-287 chr5 94254751 94255074 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -143213 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 269-411 chr8 119656496 119656752 + 2 NA intron (NM_001330600, intron 1 of 25) L2a|LINE|L2 16766 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 375-12 chr1 82453363 82453673 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -449665 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 288-144 chr16 26056039 26056184 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 30874 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 552-106 chr2 83472233 83472654 + 2 NA Intergenic Intergenic -50371 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 375-375 chr7 40977330 40977646 + 2 NA intron (NR_110831, intron 1 of 2) intron (NR_110831, intron 1 of 2) 2451 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 327-480 chr8 49550721 49550921 + 2 NA Intergenic L1MEc|LINE|L1 -38641 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 290-374 chr5 162649961 162650136 + 2 NA Intergenic Intergenic 582406 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 381-334 chr6 81019079 81019364 + 2 NA Intergenic L1M8|LINE|L1 733460 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 542-33 chr11 26717077 26717436 + 2 NA intron (NM_178498, intron 1 of 14) intron (NM_178498, intron 1 of 14) 4804 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 353-163 chr15 88156828 88157018 + 2 NA intron (NM_001007156, intron 5 of 15) intron (NM_001007156, intron 5 of 15) 49051 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 380-340 chr6 61549130 61549479 + 2 NA intron (NR_146870, intron 14 of 15) Charlie1a|DNA|hAT-Charlie -24826 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 385-140 chr18 1149424 1149711 + 2 NA Intergenic L1MA2|LINE|L1 210062 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 596-2 chr1 58132671 58133177 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 117579 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 381-309 chr5 50206685 50206922 + 2 NA Intergenic ALR/Alpha|Satellite|centr 234485 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 708-40 chr2 221707157 221707822 + 2 NA Intergenic AluSq2|SINE|Alu -133287 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 409-212 chr4 14004573 14004867 + 2 NA Intergenic Intergenic -107248 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 372-499 chr8 136569171 136569469 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 38522 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 359-180 chr17 16622941 16623295 + 2 NA exon (NM_020787, exon 6 of 6) exon (NM_020787, exon 6 of 6) 30732 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 323-259 chr2 103933346 103933589 + 2 NA Intergenic Intergenic 474865 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 220-288 chr5 81768421 81768606 + 2 NA Intergenic Intergenic -17260 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 397-62 chr12 39046028 39046276 + 2 NA Intergenic Intergenic -140561 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 343-258 chr2 115593797 115593990 + 2 NA intron (NM_001321912, intron 6 of 25) LTR49-int|LTR|ERV1 250078 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 209-80 chr13 30058454 30058658 + 2 NA Intergenic MER41-int|LTR|ERV1 50319 NR_046998 100874146 Hs.574116 NR_046998 ENSG00000224511 LINC00365 - long intergenic non-protein coding RNA 365 ncRNA 387-101 chr14 41430722 41431059 + 2 NA Intergenic L1PA17|LINE|L1 -175966 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 295-207 chr2 48973554 48973786 + 2 NA intron (NM_000145, intron 8 of 9) intron (NM_000145, intron 8 of 9) -85933 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 345-93 chr11 71225157 71225356 + 2 NA promoter-TSS (NM_012309) promoter-TSS (NM_012309) -460 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 358-517 chr9 87355899 87356141 + 2 NA Intergenic L1ME1|LINE|L1 -141208 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 149-38 chr16 54732362 54732438 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 115833 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 450-130 chr2 9527762 9528163 + 2 NA intron (NM_003183, intron 4 of 18) intron (NM_003183, intron 4 of 18) 27868 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 344-468 chr7 136124333 136124583 + 2 NA Intergenic Intergenic -147099 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 365-433 chrX 28700027 28700221 + 2 NA intron (NM_014271, intron 1 of 10) intron (NM_014271, intron 1 of 10) 112678 NM_014271 11141 Hs.658912 NM_014271 ENSG00000169306 IL1RAPL1 IL-1-RAPL-1|IL-1RAPL-1|IL1R8|IL1RAPL|IL1RAPL-1|MRX10|MRX21|MRX34|OPHN4|TIGIRR-2 interleukin 1 receptor accessory protein like 1 protein-coding 817-22 chr19 36970564 36971251 + 2 NA intron (NM_001204839, intron 5 of 8) L1M5|LINE|L1 54575 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 170-58 chr17 35322528 35322658 + 2 NA Intergenic LOR1-int|LTR|ERV1 51028 NM_001104590 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 217-60 chr11 24666273 24666433 + 2 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 169300 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 249-443 chr9 13485748 13485989 + 2 NA Intergenic L2c|LINE|L2 -54539 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 222-128 chr16 8388403 8388609 + 2 NA Intergenic L2c|LINE|L2 201332 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 310-322 chr3 44639786 44639999 + 2 NA intron (NM_001351734, intron 6 of 6).2 L2c|LINE|L2 -8840 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 220-59 chr10 105517496 105517690 + 2 NA Intergenic L2a|LINE|L2 302740 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 305-213 chr18 5554213 5554421 + 2 NA intron (NM_001281535, intron 3 of 21) L2a|LINE|L2 -9978 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 362-65 chr10 59175038 59175296 + 2 NA non-coding (NR_131782, exon 1 of 1) non-coding (NR_131782, exon 1 of 1) 1297 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 353-97 chr11 115792075 115792384 + 2 NA Intergenic Intergenic -32029 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 239-194 chr2 159423315 159423461 + 2 NA intron (NM_001329858, intron 12 of 36) L1PA16|LINE|L1 -136685 NM_001128212 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 346-540 chrX 79600588 79600803 + 2 NA Intergenic Intergenic -233143 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 650-73 chr21 31200596 31201025 + 2 NA intron (NM_001353686, intron 12 of 27) Charlie4a|DNA|hAT-Charlie -39870 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 408-225 chr4 35182908 35183163 + 2 NA Intergenic L1PREC2|LINE|L1 -913288 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 273-47 chr10 44820858 44821112 + 2 NA intron (NR_033842, intron 7 of 7) L1MC4a|LINE|L1 -90331 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 303-13 chr1 116109287 116109467 + 2 NA Intergenic Intergenic -2378 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 448-54 chr12 5685074 5685421 + 2 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 191115 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 409-82 chr14 82151938 82152230 + 2 NA Intergenic Intergenic -408946 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 740-43 chr2 124674840 124675469 + 2 NA intron (NM_130773, intron 13 of 23) L1M4|LINE|L1 649867 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 380-64 chr11 35916276 35916480 + 2 NA Intergenic Intergenic -27603 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 230-83 chr12 55586504 55586639 + 2 NA Intergenic L1M1|LINE|L1 12156 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 470-116 chr2 14073329 14073632 + 2 NA Intergenic Intergenic 327478 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 226-287 chr5 98273330 98273532 + 2 NA Intergenic L1MA3|LINE|L1 -112192 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 356-236 chr2 52568340 52568600 + 2 NA Intergenic L1PA15|LINE|L1 134145 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 248-397 chr8 51409947 51410143 + 2 NA intron (NM_144651, intron 16 of 22) intron (NM_144651, intron 16 of 22) 399400 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 307-178 chr16 76453596 76453837 + 2 NA intron (NM_001322178, intron 8 of 22) intron (NM_001322178, intron 8 of 22) 143864 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 297-222 chr2 121874148 121874407 + 2 NA Intergenic Intergenic 118626 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 347-494 chr8 43168673 43168928 + 2 NA intron (NM_152419, intron 5 of 17) L1M5|LINE|L1 28336 NM_001363228 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|RP73|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 311-188 chr16 85539596 85539846 + 2 NA Intergenic Intergenic -71688 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 303-513 chrX 152143446 152143666 + 2 NA Intergenic L1MC3|LINE|L1 -4978 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 292-336 chr5 10100656 10100855 + 2 NA Intergenic Intergenic 149133 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 369-276 chr3 178787269 178787474 + 2 NA intron (NR_126560, intron 2 of 7) intron (NR_126560, intron 2 of 7) 73034 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 341-414 chr5 4100137 4100310 + 2 NA Intergenic Intergenic 504391 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 291-383 chr6 64781884 64782093 + 2 NA intron (NM_001292009, intron 22 of 43) MIR3|SINE|MIR -519430 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 327-446 chr6 155353731 155353917 + 2 NA Intergenic L1MA7|LINE|L1 -39340 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 411-89 chr14 61890908 61891195 + 2 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -36644 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 311-411 chr5 90747616 90747849 + 2 NA intron (NR_003149, intron 52 of 89) MER68|LTR|ERVL 188935 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 212-145 chr2 34767606 34767791 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 90141 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 424-265 chr7 91672889 91673157 + 2 NA Intergenic AluJr4|SINE|Alu 207679 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 568-102 chr2 52504869 52505251 + 2 NA Intergenic Intergenic 134412 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 305-382 chr4 55798299 55798499 + 2 NA Intergenic HAL1|LINE|L1 -21604 NM_001351574 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 399-72 chr12 77786084 77786413 + 2 NA Intergenic Intergenic -44646 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 294-368 chr5 30913574 30913825 + 2 NA Intergenic MIRb|SINE|MIR -279987 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 369-344 chr5 164890205 164890486 + 2 NA Intergenic Intergenic 420066 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 252-408 chr7 123665143 123665321 + 2 NA TTS (NM_207163) TTS (NM_207163) 9366 NM_207163 442721 Hs.592260 NM_207163 ENSG00000170807 LMOD2 C-LMOD|CLMOD leiomodin 2 protein-coding 226-249 chr4 31584188 31584364 + 2 NA Intergenic (ATTAATT)n|Simple_repeat|Simple_repeat 77732 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 502-121 chr18 66649511 66649986 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -45658 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 356-400 chr5 79104835 79105132 + 2 NA Intergenic Intergenic -6826 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 201-244 chr8 117298752 117298923 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 163842 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 429-154 chr2 78934136 78934557 + 2 NA Intergenic MIR|SINE|MIR -91356 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 229-417 chr9 84922408 84922629 + 2 NA intron (NM_001018064, intron 13 of 17) intron (NM_001018064, intron 13 of 17) 216617 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 713-62 chr4 43824490 43825091 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -192071 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 272-219 chr2 168300502 168300728 + 2 NA Intergenic Intergenic -53020 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 410-30 chr10 31601710 31601968 + 2 NA Intergenic L1ME4a|LINE|L1 -202084 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 330-215 chr17_GL000205v2_random 8651 8913 + 2 NA Intergenic CER|Satellite|Satellite 49184 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 285-359 chr5 163054345 163054500 + 2 NA Intergenic L1MA4|LINE|L1 -383149 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 257-170 chr19 40138431 40138679 + 2 NA Intergenic AluSz|SINE|Alu -47612 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 184-24 chr10 52184398 52184511 + 2 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 129674 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 235-208 chr21 21440867 21441063 + 2 NA intron (NM_001352592, intron 13 of 18) intron (NM_001352592, intron 13 of 18) 293803 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 616-71 chr19 40552983 40553508 + 2 NA intron (NM_025213, intron 5 of 9) AluJr|SINE|Alu 22754 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 549-41 chr12 16210077 16210527 + 2 NA intron (NM_001170798, intron 7 of 8) intron (NM_001170798, intron 7 of 8) 67383 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 177-16 chr10 46560063 46560158 + 2 NA Intergenic AluSz|SINE|Alu -4039 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 373-406 chr8 78882748 78883034 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 45362 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 721-54 chr3 40847611 40848280 + 2 NA Intergenic Intergenic 322985 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 284-142 chr15 96941701 96941931 + 2 NA Intergenic L1MEg|LINE|L1 158381 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 320-533 chr8 51932607 51932818 + 2 NA Intergenic L2c|LINE|L2 -33526 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 460-128 chr2 4717335 4717651 + 2 NA Intergenic L1MA4|LINE|L1 -61271 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 467-122 chr19 20361680 20362058 + 2 NA Intergenic AluY|SINE|Alu 37485 NR_036053 100302179 NR_036053 ENSG00000238517 MIR1270 MIR1270-1|MIR1270-2|MIRN1270|hsa-mir-1270|hsa-mir-1270-1|mir-1270 microRNA 1270 ncRNA 341-183 chr16 26773558 26773769 + 2 NA Intergenic Intergenic -293264 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 291-410 chr7 53612347 53612548 + 2 NA Intergenic Intergenic 199484 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 444-245 chr7 105213926 105214247 + 2 NA intron (NM_182692, intron 2 of 15) MER3|DNA|hAT-Charlie 54991 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 353-78 chr11 27408590 27408908 + 2 NA intron (NM_001346432, intron 1 of 16) intron (NM_001346432, intron 1 of 16) -45501 NM_080654 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 347-329 chr4 5591115 5591401 + 2 NA intron (NM_147127, intron 16 of 21) MER72|LTR|ERV1 66102 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 500-216 chr4 171103100 171103420 + 2 NA Intergenic L1MB2|LINE|L1 62658 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 355-295 chr21 28319410 28319649 + 2 NA Intergenic L2a|LINE|L2 -90862 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 744-51 chr4 107514858 107515512 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 205049 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 226-227 chr3 88833536 88833713 + 2 NA Intergenic Intergenic -273997 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 546-209 chr6 74867044 74867493 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 261514 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 404-154 chr2 21082921 21083159 + 2 NA Intergenic L1M5|LINE|L1 -38967 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 500-159 chr2 199757675 199758055 + 2 NA Intergenic Intergenic 93308 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 326-329 chr3 40726789 40727068 + 2 NA Intergenic LTR16A1|LTR|ERVL 201968 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 720-8 chr10 8909490 8910021 + 2 NA intron (NR_131944, intron 2 of 3) intron (NR_131944, intron 2 of 3) 11766 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 365-281 chr4 36142251 36142574 + 2 NA intron (NR_146894, intron 19 of 32) L2b|LINE|L2 101527 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 477-189 chr3 4583337 4583680 + 2 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 90160 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 655-57 chr2 76730591 76731150 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -255095 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 232-46 chr10 112847749 112847897 + 2 NA intron (NM_001365713, intron 8 of 8) L2b|LINE|L2 24327 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 215-31 chr10 48878108 48878283 + 2 NA intron (NM_020945, intron 43 of 61) intron (NM_020945, intron 43 of 61) 36040 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 339-206 chr17 5571351 5571602 + 2 NA intron (NM_014922, intron 3 of 15) L1PA15|LINE|L1 13033 NM_001033053 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 346-487 chr8 83229427 83229624 + 2 NA Intergenic L1ME2|LINE|L1 -174233 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 342-129 chr13 71195604 71195846 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 180584 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 706-70 chr7 37162646 37163169 + 2 NA intron (NM_001206480, intron 13 of 21) LTR37B|LTR|ERV1 165111 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 218-136 chr19 28660571 28660728 + 2 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 53961 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 299-108 chr12 86709313 86709603 + 2 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 35691 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 318-434 chr5 38068554 38068810 + 2 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 42985 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 280-3 chr1 17821197 17821349 + 2 NA intron (NM_030812, intron 1 of 2) L1ME1|LINE|L1 65940 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 463-41 chr10 75316534 75316843 + 2 NA intron (NR_038226, intron 2 of 3) L1M1|LINE|L1 20305 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 423-100 chr17 59708823 59709148 + 2 NA intron (NM_001329394, intron 1 of 11) intron (NM_001329394, intron 1 of 11) 1331 NM_001329400 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 464-26 chr10 97795294 97795630 + 2 NA Intergenic L1MC2|LINE|L1 -23463 NM_003015 6425 Hs.279565 NM_003015 ENSG00000120057 SFRP5 SARP3 secreted frizzled related protein 5 protein-coding 407-58 chr11 115296410 115296718 + 2 NA intron (NM_001098517, intron 1 of 8) MSTB2|LTR|ERVL-MaLR -37013 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 398-341 chr8 34511969 34512257 + 2 NA Intergenic Intergenic -271808 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 518-324 chrX 153731067 153731488 + 2 NA intron (NM_000033, intron 2 of 9) L1MEd|LINE|L1 6421 NM_000033 215 Hs.159546 NM_000033 ENSG00000101986 ABCD1 ABC42|ALD|ALDP|AMN ATP binding cassette subfamily D member 1 protein-coding 408-333 chr8 62778906 62779163 + 2 NA intron (NM_001304533, intron 4 of 6) L1MA3|LINE|L1 -198827 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 216-297 chr6 36164945 36165094 + 2 NA Intergenic MamGypLTR2c|LTR|Gypsy -31725 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 338-213 chr17 52512527 52512727 + 2 NA intron (NR_146898, intron 1 of 3) HAL1M8|LINE|L1 122105 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 499-12 chr1 182539147 182539531 + 2 NA intron (NM_001366934, intron 15 of 22) L2b|LINE|L2 49917 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 229-359 chr7 45997180 45997350 + 2 NA Intergenic L1M4|LINE|L1 -75993 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 477-207 chr3 115446746 115447143 + 2 NA Intergenic Intergenic -176566 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 347-402 chr5 82256009 82256260 + 2 NA TTS (NM_001131028) TTS (NM_001131028) 22220 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 441-284 chrX 64729107 64729458 + 2 NA Intergenic L1PA10|LINE|L1 247168 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 385-378 chr8 73132896 73133273 + 2 NA Intergenic Intergenic -39912 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 378-161 chr16 53681254 53681512 + 2 NA intron (NM_001127897, intron 6 of 24) intron (NM_001127897, intron 6 of 24) 22476 NM_001328423 23322 Hs.298382 NM_015272 ENSG00000103494 RPGRIP1L CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 RPGRIP1 like protein-coding 375-105 chr12 118473695 118473939 + 2 NA Intergenic MER113A|DNA|hAT-Charlie 97262 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 152-66 chr3 182954956 182955075 + 2 NA intron (NM_020640, intron 4 of 6) intron (NM_020640, intron 4 of 6) 25523 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 282-465 chr8 123557268 123557498 + 2 NA Intergenic L2c|LINE|L2 -16177 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 321-200 chr15 87122548 87122858 + 2 NA Intergenic L2a|LINE|L2 -134277 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 335-10 chr1 73246036 73246245 + 2 NA Intergenic L1PA16|LINE|L1 -60030 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 277-120 chr14 81619779 81619954 + 2 NA intron (NR_110074, intron 1 of 2) intron (NR_110074, intron 1 of 2) 3195 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 315-362 chr5 6061393 6061563 + 2 NA Intergenic Intergenic 275814 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 260-135 chr14 78945091 78945268 + 2 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -254803 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 153-100 chr8 136328045 136328133 + 2 NA Intergenic Intergenic -202709 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 517-250 chr7 57467861 57468337 + 2 NA intron (NM_001159279, intron 3 of 3) intron (NM_001159279, intron 3 of 3) 17922 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 166-65 chr20 59879435 59879551 + 2 NA intron (NM_014258, intron 31 of 44) intron (NM_014258, intron 31 of 44) 54144 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 298-321 chr4 41546415 41546650 + 2 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) 8375 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 456-167 chr2 155946715 155947125 + 2 NA Intergenic Intergenic 308011 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 718-44 chr2 154120745 154121305 + 2 NA intron (NM_052917, intron 3 of 12) L1MA7|LINE|L1 176631 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 386-203 chr20 8860778 8861132 + 2 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) 29770 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 125-44 chr4 53931581 53931662 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 55661 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 282-123 chr14 49207564 49207781 + 2 NA Intergenic Intergenic 378708 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 418-226 chr5 154257093 154257385 + 2 NA intron (NM_198321, intron 1 of 11) MIRb|SINE|MIR 66506 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 292-368 chr5 169405586 169405816 + 2 NA Intergenic Intergenic -104562 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 336-496 chr6 133612285 133612495 + 2 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -208757 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 198-201 chr5 112455001 112455127 + 2 NA Intergenic Intergenic 35481 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 664-31 chr12 27607835 27608300 + 2 NA intron (NM_001198915, intron 2 of 26) intron (NM_001198915, intron 2 of 26) 83861 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 304-510 chr8 76624845 76625021 + 2 NA intron (NR_024360, intron 2 of 3) intron (NR_024360, intron 2 of 3) -56314 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 291-140 chr14 87455936 87456179 + 2 NA Intergenic AluSx4|SINE|Alu 199237 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 197-160 chr4 156572785 156572955 + 2 NA Intergenic Intergenic 398929 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 200-195 chr4 101281391 101281537 + 2 NA intron (NM_001130691, intron 1 of 12) L2a|LINE|L2 -40592 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 432-10 chr1 112134972 112135289 + 2 NA Intergenic MIR3|SINE|MIR 144594 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 468 chr1 7225165 7225526 + 2 NA intron (NM_001349608, intron 3 of 21) AluY|SINE|Alu 164409 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 320-187 chr16 52244981 52245223 + 2 NA Intergenic LTR16A|LTR|ERVL -13462 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 485-255 chr6 164493731 164494085 + 2 NA Intergenic L2a|LINE|L2 328155 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 428-234 chr5 78337412 78337748 + 2 NA Intergenic AluSc|SINE|Alu 22961 NR_105014 728769 Hs.586193 NR_105014 ENSG00000245556 SCAMP1-AS1 - SCAMP1 antisense RNA 1 ncRNA 308-155 chr15 39137241 39137432 + 2 NA Intergenic MIR|SINE|MIR -113333 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 256-74 chr11 127322211 127322402 + 2 NA intron (NR_120580, intron 1 of 2) L1M5|LINE|L1 51236 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 241-241 chr3 99424475 99424618 + 2 NA Intergenic Intergenic -214048 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 376-145 chr18 1010360 1010628 + 2 NA Intergenic Intergenic -82501 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 396-294 chr5 124742967 124743262 + 2 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 1998 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 255-112 chr14 68968628 68968802 + 2 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 10587 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 322-23 chr1 115287557 115287738 + 2 NA intron (NM_002506, intron 2 of 2) intron (NM_002506, intron 2 of 2) 4613 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 216-55 chr11 37593564 37593709 + 2 NA Intergenic Intergenic -344965 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 277-15 chr1 99383254 99383461 + 2 NA Intergenic MER57E1|LTR|ERV1 104447 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 431-91 chr15 77339868 77340246 + 2 NA intron (NM_024776, intron 1 of 7) L1MC2|LINE|L1 80047 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 258-241 chr21 27243014 27243209 + 2 NA Intergenic Intergenic -276023 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 470-204 chr4 180708200 180708503 + 2 NA Intergenic Intergenic 450798 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 456-142 chr19 29471920 29472351 + 2 NA intron (NR_040029, intron 1 of 9) L1ME3Cz|LINE|L1 53617 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 308-386 chr5 83922725 83922908 + 2 NA Intergenic Intergenic -201961 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 222-305 chr5 108308911 108309091 + 2 NA intron (NM_001163315, intron 4 of 8) L1ME4a|LINE|L1 73097 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 251-363 chr7 25924427 25924631 + 2 NA Intergenic Intergenic 25457 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 655-73 chr20 45733231 45733660 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 11098 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 396-126 chr17 35474403 35474744 + 2 NA TTS (NM_001195790) TTS (NM_001195790) 13166 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 401-154 chr2 35794368 35794738 + 2 NA Intergenic Intergenic 323148 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 224-283 chr6 133579808 133580014 + 2 NA intron (NR_109982, intron 4 of 8) L1MB3|LINE|L1 -241236 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 236-251 chr4 36687115 36687264 + 2 NA Intergenic Intergenic -45289 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 337-254 chr2 63520954 63521131 + 2 NA intron (NR_148705, intron 1 of 16) L1PA13|LINE|L1 67435 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 171-106 chr5 109603524 109603642 + 2 NA Intergenic L1ME3G|LINE|L1 -85783 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 291-16 chr1 114238129 114238411 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 -84401 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 297-293 chr3 75012338 75012512 + 2 NA Intergenic Intergenic -202051 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 265-4 chr1 42694914 42695164 + 2 NA intron (NR_132737, intron 2 of 6) intron (NR_132737, intron 2 of 6) 11903 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 240-369 chr6 9528769 9528996 + 2 NA Intergenic L1MC4|LINE|L1 -875620 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 134-80 chr7 7711460 7711591 + 2 NA intron (NM_002947, intron 2 of 7) L1M5|LINE|L1 7082 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 255-458 chr9 29713110 29713341 + 2 NA Intergenic Intergenic -499624 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 225-89 chr14 63558396 63558555 + 2 NA Intergenic Intergenic -15080 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 316-449 chr5 102598446 102598626 + 2 NA intron (NR_047462, intron 1 of 1) L1ME4c|LINE|L1 17168 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 582-142 chr7 35280825 35281296 + 2 NA Intergenic Intergenic -26960 NM_001077653 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 254-374 chr7 30496324 30496533 + 2 NA TTS (NM_001199817) TTS (NM_001199817) 8401 NR_037669 79017 Hs.530024 NM_024051 ENSG00000006625 GGCT C7orf24|CRF21|GCTG|GGC gamma-glutamylcyclotransferase protein-coding 359-72 chr10 111688727 111689026 + 2 NA Intergenic Intergenic 494889 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 299-337 chr4 138559963 138560181 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger 250361 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 311-280 chr2 211106763 211107043 + 2 NA Intergenic Intergenic 489332 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 378-260 chr20 54796941 54797176 + 2 NA Intergenic L1MEc|LINE|L1 321465 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 224-270 chr5 175423933 175424102 + 2 NA Intergenic L1MC3|LINE|L1 20165 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 195-156 chr4 5641726 5641866 + 2 NA intron (NM_147127, intron 9 of 21) L1PA8|LINE|L1 66763 NM_147127 132884 Hs.87306 NM_147127 ENSG00000173040 EVC2 LBN|WAD EvC ciliary complex subunit 2 protein-coding 551-165 chr5 120357202 120357575 + 2 NA Intergenic Intergenic -106890 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 645-134 chr9 4002557 4003094 + 2 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 104179 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 271-194 chr2 40008201 40008433 + 2 NA intron (NR_038441, intron 2 of 4) MER20|DNA|hAT-Charlie 90683 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 643-71 chr3 35585201 35585751 + 2 NA Intergenic L1MC|LINE|L1 -54049 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 417-82 chr14 53990753 53991095 + 2 NA Intergenic Intergenic -34033 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 547-242 chr8 100133914 100134366 + 2 NA intron (NR_036491, intron 4 of 4) intron (NR_036491, intron 4 of 4) 11677 NM_001029860 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 624-32 chr12 114027175 114027616 + 2 NA Intergenic Intergenic -61070 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 476-118 chr18 9202419 9202886 + 2 NA intron (NM_001204056, intron 3 of 11) Tigger19b|DNA|TcMar-Tigger 65089 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 473-128 chr2 36793649 36794035 + 2 NA intron (NM_001177969, intron 11 of 14) intron (NM_001177969, intron 11 of 14) 97135 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 268-25 chr1 239000681 239000834 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 -385811 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 271-473 chr9 21134955 21135207 + 2 NA Intergenic Intergenic 6820 NM_002177 3467 Hs.73010 NM_002177 ENSG00000177047 IFNW1 - interferon omega 1 protein-coding 300-75 chr11 98459747 98459923 + 2 NA Intergenic Intergenic -561114 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 120-32 chr3 50711829 50711909 + 2 NA intron (NM_004947, intron 1 of 52) L1M4|LINE|L1 36789 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 357-82 chr12 28666073 28666307 + 2 NA Intergenic L1MEg|LINE|L1 -475452 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 310-166 chr16 13150868 13151098 + 2 NA intron (NM_001145204, intron 2 of 4) LTR101_Mam|LTR|ERVL 249385 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 357-217 chr2 133958277 133958576 + 2 NA Intergenic Intergenic -161509 NM_001371457 427-212 chr5 115772053 115772386 + 2 NA Intergenic LTR37A|LTR|ERV1 44438 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 123-7 chr10 78488886 78488998 + 2 NA Intergenic Intergenic 221600 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 326-370 chr4 46023476 46023677 + 2 NA Intergenic Intergenic 100478 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 494-182 chr3 96511110 96511477 + 2 NA Intergenic Intergenic 151329 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 175-82 chr2 137128270 137128441 + 2 NA intron (NM_001316349, intron 5 of 27) intron (NM_001316349, intron 5 of 27) 362810 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 641-120 chrX 53669963 53670589 + 2 NA intron (NM_031407, intron 3 of 83) intron (NM_031407, intron 3 of 83) 16443 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 304-560 chr9 132696363 132696568 + 2 NA Intergenic L1MEg|LINE|L1 26001 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 378-182 chr17_GL000205v2_random 6347 6538 + 2 NA Intergenic CER|Satellite|Satellite 51524 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 126-64 chr8 125998656 125998746 + 2 NA Intergenic Intergenic -47504 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 252-294 chr4 45906314 45906484 + 2 NA Intergenic L1MA4|LINE|L1 217655 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 366-323 chr4 105954614 105954812 + 2 NA intron (NM_001184692, intron 8 of 10) intron (NM_001184692, intron 8 of 10) 59242 NM_001184692 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 225-356 chr8 87099394 87099580 + 2 NA intron (NM_173538, intron 4 of 10) L2c|LINE|L2 233072 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 447-88 chr16 24388069 24388358 + 2 NA Intergenic AluSg|SINE|Alu 132660 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 268-411 chr8 120596101 120596334 + 2 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) 150798 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 270-16 chr1 184912470 184912632 + 2 NA intron (NM_052966, intron 1 of 13) L1ME3Cz|LINE|L1 61957 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 316-104 chr11 72548732 72548913 + 2 NA Intergenic Intergenic -21834 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 413-31 chr10 28034400 28034798 + 2 NA Intergenic L1MDa|LINE|L1 -35520 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 276-300 chr3 89194003 89194204 + 2 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 86482 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 198-47 chr11 133616998 133617192 + 2 NA Intergenic AluSx1|SINE|Alu -84594 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 316-224 chr18 47589956 47590165 + 2 NA intron (NR_147192, intron 2 of 2) AluSc|SINE|Alu 209564 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 276-58 chr10 62722498 62722729 + 2 NA Intergenic Intergenic -82107 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 326-23 chr1 106414997 106415214 + 2 NA Intergenic L1MEg|LINE|L1 -386852 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 282-354 chr4 146724312 146724491 + 2 NA intron (NR_133922, intron 12 of 13) intron (NR_133922, intron 12 of 13) 85508 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 435-258 chr8 131798896 131799257 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie -105017 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 527-24 chr10 47192589 47192964 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -107421 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 173-3 chr1 93273929 93274047 + 2 NA intron (NM_001306076, intron 28 of 28) MIR|SINE|MIR 71823 NR_034089 100131564 Hs.732666 NR_034089 CCDC18-AS1 - CCDC18 antisense RNA 1 ncRNA 136-22 chr14 67437126 67437247 + 2 NA Intergenic L2a|LINE|L2 4744 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 510-76 chr14 66848631 66849082 + 2 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -340584 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 147-16 chr12 133156845 133156947 + 2 NA exon (NM_015394, exon 5 of 5) exon (NM_015394, exon 5 of 5) -24599 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 348-567 chrX 46497378 46497580 + 2 NA TTS (NM_001039891) TTS (NM_001039891) 47942 NM_001039891 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 290-384 chr6 50929644 50929830 + 2 NA Intergenic Intergenic 110866 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 436-311 chr8 113535244 113535627 + 2 NA Intergenic Intergenic -98496 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 211-271 chr7 19085970 19086124 + 2 NA Intergenic AluJb|SINE|Alu 31589 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 461-275 chr8 120029579 120029936 + 2 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -95345 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 295-416 chr6 110462675 110462891 + 2 NA intron (NM_033125, intron 1 of 7) L1PA17|LINE|L1 13830 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 277-369 chr7 22244152 22244349 + 2 NA intron (NM_012294, intron 7 of 25) L1MA6|LINE|L1 -49440 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 316-153 chr13 44536357 44536631 + 2 NA intron (NM_183422, intron 1 of 2) intron (NM_183422, intron 1 of 2) -39402 NR_038381 641467 Hs.624196 NR_038381 ENSG00000278156 TSC22D1-AS1 - TSC22D1 antisense RNA 1 ncRNA 566-188 chr7 154545938 154546383 + 2 NA intron (NR_157196, intron 4 of 25) L1ME4c|LINE|L1 241001 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 197-34 chr10 131485813 131485964 + 2 NA Intergenic Intergenic -174167 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 254-272 chr4 57655715 57655914 + 2 NA Intergenic Intergenic 229942 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 158-57 chr2 127686636 127686758 + 2 NA Intergenic L1MD2|LINE|L1 -4911 NM_001161404 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 276-63 chr10 80617940 80618112 + 2 NA intron (NM_207372, intron 6 of 6) MLT1K|LTR|ERVL-MaLR -31771 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 307-12 chr1 88083012 88083232 + 2 NA Intergenic Intergenic -601022 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 326-72 chr10 69448131 69448410 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -3195 NM_012339 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 349-517 chr9 77280452 77280654 + 2 NA intron (NM_001018038, intron 27 of 68) intron (NM_001018038, intron 27 of 68) -102636 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 372-340 chr3 153089735 153089992 + 2 NA Intergenic (TTTCAA)n|Simple_repeat|Simple_repeat -72363 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 317-24 chr1 165224417 165224627 + 2 NA intron (NM_177398, intron 4 of 8) MIR|SINE|MIR 131719 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 177-4 chr1 85301658 85301792 + 2 NA Intergenic L1MC4a|LINE|L1 -25093 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 246-369 chr7 44863056 44863244 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -15024 NM_201436 94239 Hs.488189 NM_012412 ENSG00000105968 H2AFV H2A.Z-2|H2AV H2A histone family member V protein-coding 297-208 chr2 43844762 43845039 + 2 NA intron (NM_001357321, intron 2 of 12) L1MD3|LINE|L1 5929 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 611-99 chr3 34423197 34423626 + 2 NA Intergenic Intergenic 624781 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 237-240 chr3 74967884 74968049 + 2 NA Intergenic MER20|DNA|hAT-Charlie -246510 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 310-307 chr21 32513015 32513212 + 2 NA intron (NR_104472, intron 6 of 6) intron (NR_104472, intron 6 of 6) 72410 NM_144659 140290 Hs.728804 NM_018277 ENSG00000242220 TCP10L C21orf77|PRED77|TCP10A-1|TCP10A-2 t-complex 10 like protein-coding 395-253 chr4 91208479 91208806 + 2 NA intron (NM_001145065, intron 10 of 10) L1PREC2|LINE|L1 973611 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 341-436 chr5 66998117 66998316 + 2 NA intron (NM_001290226, intron 1 of 26) intron (NM_001290226, intron 1 of 26) 5938 NR_111908 101928794 Hs.672435 NR_111908 MAST4-AS1 - MAST4 antisense RNA 1 ncRNA 330-108 chr12 5879566 5879883 + 2 NA intron (NM_001278596, intron 3 of 25) L2c|LINE|L2 65535 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 212-272 chr6 7837097 7837248 + 2 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 72905 NM_001145549 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 361-98 chr12 28666604 28666847 + 2 NA Intergenic L1MEg|LINE|L1 -475987 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 313-8 chr1 53510729 53510910 + 2 NA intron (NM_147193, intron 7 of 9) L3|LINE|CR1 51420 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 349-59 chr10 55380544 55380805 + 2 NA intron (NM_001354404, intron 2 of 34) LTR40a|LTR|ERVL -218368 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 352-65 chr10 116131472 116131672 + 2 NA intron (NM_145793, intron 3 of 8) L1ME2z|LINE|L1 63217 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 526-170 chr3 74881549 74881992 + 2 NA Intergenic Intergenic -332706 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 371-310 chr5 55083851 55084146 + 2 NA Intergenic Intergenic -18648 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 391-16 chr1 164852885 164853223 + 2 NA intron (NM_001353131, intron 7 of 7) MLT1J2|LTR|ERVL-MaLR -78413 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 237-351 chr7 33255668 33255803 + 2 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 126171 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 384-95 chr13 63845261 63845477 + 2 NA Intergenic L1M5|LINE|L1 -1244 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 548-193 chr6 17995157 17995521 + 2 NA Intergenic AluJb|SINE|Alu -7704 NM_001105568 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 484-155 chr20 45755820 45756130 + 2 NA Intergenic AluYa5|SINE|Alu 33628 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 305-409 chr4 146163881 146164042 + 2 NA Intergenic L1PB2|LINE|L1 -11757 NM_007080 11157 Hs.190520 NM_007080 ENSG00000164167 LSM6 YDR378C LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 392-160 chr2 150566949 150567299 + 2 NA intron (NR_110241, intron 4 of 5) (TTG)n|Simple_repeat|Simple_repeat 5097 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 287-427 chr9 9521475 9521664 + 2 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -277823 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 358-308 chr3 132994337 132994657 + 2 NA Intergenic Intergenic -43791 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 618-14 chr10 50794421 50794810 + 2 NA Intergenic MER117|DNA|hAT-Charlie 54679 NM_001079516 653308 Hs.659820 NM_001079516 ENSG00000204147 ASAH2B ASAH2C|ASAH2L|bA449O16.3|bA98I6.3 N-acylsphingosine amidohydrolase 2B protein-coding 567-163 chr6 162936126 162936499 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 117849 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 240-129 chr13 105850680 105850890 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 143955 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 441-180 chr4 51975278 51975657 + 2 NA Intergenic L1MA8|LINE|L1 44896 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 369-188 chr2 29958023 29958320 + 2 NA Intergenic L1P4|LINE|L1 -36585 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 243-487 chrX 111644460 111644660 + 2 NA Intergenic L1M1|LINE|L1 -36558 NR_033125 79868 Hs.443061 NM_018466 ENSG00000101901 ALG13 CDG1S|CXorf45|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W ALG13 UDP-N-acetylglucosaminyltransferase subunit protein-coding 332-299 chr21 20208759 20209003 + 2 NA Intergenic Intergenic 49804 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 333-340 chr3 8046362 8046542 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -30145 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 238-395 chr8 125865940 125866141 + 2 NA Intergenic L1MA9|LINE|L1 85157 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 313-114 chr12 92602445 92602641 + 2 NA Intergenic Intergenic -100300 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 403-82 chr12 125716611 125716875 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 94291 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 264-362 chr6 69059352 69059524 + 2 NA intron (NM_001704, intron 15 of 31) intron (NM_001704, intron 15 of 31) 424156 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 226-137 chr18 9465049 9465239 + 2 NA Intergenic L2b|LINE|L2 -10369 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 285-103 chr13 74235271 74235438 + 2 NA intron (NR_144451, intron 1 of 1) intron (NR_144451, intron 1 of 1) 3910 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 639-29 chr12 114083367 114083871 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -117294 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 253-77 chr11 76503527 76503774 + 2 NA intron (NM_001300942, intron 10 of 21) L1MB8|LINE|L1 58625 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 297-399 chr6 48693563 48693824 + 2 NA Intergenic L1M5|LINE|L1 -625004 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 221-33 chr10 51494622 51494751 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 195113 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 198-188 chr4 157145321 157145484 + 2 NA intron (NM_001166061, intron 8 of 8) MIR|SINE|MIR 68999 NM_001166060 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 233-44 chr10 81109867 81110023 + 2 NA Intergenic Intergenic 460148 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 431-256 chr6 123665647 123665917 + 2 NA Intergenic Intergenic -28689 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 353-240 chr2 34399227 34399544 + 2 NA Intergenic L3|LINE|CR1 -278172 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 302-312 chr4 30803791 30803951 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 83502 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 218-225 chr3 129080726 129080937 + 2 NA Intergenic Intergenic 20064 NM_000174 2815 Hs.1144 NM_000174 ENSG00000169704 GP9 CD42a|GPIX glycoprotein IX platelet protein-coding 330-5 chr1 26413126 26413351 + 2 NA intron (NM_024674, intron 2 of 3) intron (NM_024674, intron 2 of 3) 2421 NM_024674 79727 Hs.86154 NM_024674 ENSG00000131914 LIN28A CSDD1|LIN-28|LIN28|ZCCHC1|lin-28A lin-28 homolog A protein-coding 497-51 chr12 528151 528470 + 2 NA intron (NM_173593, intron 1 of 19) AluJr|SINE|Alu 58176 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 345-100 chr11 106630457 106630783 + 2 NA Intergenic L2a|LINE|L2 379213 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 211-234 chr5 45738948 45739084 + 2 NA Intergenic Intergenic -42636 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 590-141 chr5 163099467 163099865 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -337905 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 722-73 chr7 132187480 132187900 + 2 NA intron (NM_020911, intron 14 of 31) intron (NM_020911, intron 14 of 31) -73171 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 316-599 chrX 40855089 40855316 + 2 NA Intergenic Intergenic -22006 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 551-40 chr12 28916847 28917215 + 2 NA Intergenic L1PA16|LINE|L1 -232247 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 473-82 chr14 47911279 47911669 + 2 NA Intergenic L2a|LINE|L2 -116460 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 325-250 chr19 51074419 51074628 + 2 NA Intergenic L1MA9|LINE|L1 8333 NR_163144 43847 Hs.283925 NM_022046 ENSG00000129437 KLK14 KLK-L6 kallikrein related peptidase 14 protein-coding 374-115 chr15 68675787 68676002 + 2 NA intron (NM_006091, intron 2 of 11) L2a|LINE|L2 34391 NM_001324015 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 478-43 chr11 79340782 79341161 + 2 NA intron (NM_001098816, intron 1 of 33) MLT1D|LTR|ERVL-MaLR 61138 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 325-449 chr5 82132200 82132367 + 2 NA intron (NM_031482, intron 3 of 7) L1PA7|LINE|L1 146071 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 258-291 chr4 65683841 65684059 + 2 NA intron (NR_034138, intron 3 of 3) intron (NR_034138, intron 3 of 3) -13455 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 304-266 chr2 120656240 120656488 + 2 NA Intergenic L2a|LINE|L2 -79504 NM_001371271 313-235 chr2 16698143 16698419 + 2 NA Intergenic L1P5|LINE|L1 -32447 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 366-174 chr18 24750375 24750580 + 2 NA intron (NR_134604, intron 2 of 2) HERVL40-int|LTR|ERVL 24696 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 784-36 chr22 40967971 40968629 + 2 NA intron (NM_014248, intron 4 of 4) AluSz|SINE|Alu 16922 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 228-205 chr22 28550349 28550517 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 90564 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 198-254 chr8 137745759 137745878 + 2 NA Intergenic L1MA3|LINE|L1 -332230 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 581-174 chr8 98779712 98780190 + 2 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) 45720 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 264-143 chr15 54295712 54295918 + 2 NA intron (NM_001329919, intron 10 of 31) intron (NM_001329919, intron 10 of 31) 283167 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 229-32 chr10 62377420 62377581 + 2 NA intron (NM_199451, intron 2 of 7) intron (NM_199451, intron 2 of 7) -2373 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 364-62 chr10 57451297 57451498 + 2 NA Intergenic Intergenic -146838 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 395-32 chr10 27891943 27892226 + 2 NA intron (NM_001290021, intron 10 of 13) intron (NM_001290021, intron 10 of 13) 89787 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 309-229 chr19 50888681 50888839 + 2 NA intron (NR_002948, intron 3 of 4) ERVL-B4-int|LTR|ERVL 7638 NR_002948 606293 Hs.643424 NR_002948 ENSG00000197588 KLKP1 KARMA|KLK31P|KRSP1|PsiKLK1|YKLK1 kallikrein pseudogene 1 pseudo 242-23 chr1 194235354 194235502 + 2 NA Intergenic Intergenic 930683 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 671-12 chr10 15945121 15945734 + 2 NA Intergenic L1MB8|LINE|L1 -84894 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 386-270 chr4 167268727 167268966 + 2 NA Intergenic Intergenic -34256 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 245-284 chr5 77009589 77009755 + 2 NA Intergenic Intergenic -20732 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 215-88 chr14 80379561 80379709 + 2 NA intron (NR_038355, intron 4 of 8) intron (NR_038355, intron 4 of 8) -148578 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 350-144 chr14 85077064 85077375 + 2 NA Intergenic Intergenic -194713 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 486-282 chr7 53829900 53830289 + 2 NA Intergenic Intergenic -18163 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 355-135 chr12 119032728 119033062 + 2 NA intron (NM_194286, intron 1 of 12) L1ME4a|LINE|L1 51354 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 438-87 chr16 71477171 71477491 + 2 NA intron (NM_006961, intron 5 of 5) intron (NM_006961, intron 5 of 5) 11993 NM_006961 7567 Hs.660076 NM_006961 ENSG00000157429 ZNF19 KOX12 zinc finger protein 19 protein-coding 189-48 chr13 48734688 48734850 + 2 NA Intergenic Intergenic 80840 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 315-229 chr2 34937834 34938016 + 2 NA Intergenic Intergenic 260368 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 260-312 chr4 71403072 71403279 + 2 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 64122 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 1515 chr12 40075840 40077018 + 2 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 29652 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 224-253 chr5 67920482 67920643 + 2 NA Intergenic Intergenic 127349 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 301-280 chr3 84902441 84902617 + 2 NA Intergenic Intergenic 20439 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 261-49 chr10 113365970 113366179 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -184757 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 345-264 chr2 83188893 83189220 + 2 NA Intergenic Intergenic 332253 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 199-135 chr2 239628558 239628744 + 2 NA Intergenic Intergenic -134209 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 353-333 chr3 95611383 95611703 + 2 NA Intergenic HAL1b|LINE|L1 71650 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 340-120 chr12 126904960 126905187 + 2 NA Intergenic MER41B|LTR|ERV1 -30383 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 166-16 chr12 19898025 19898156 + 2 NA Intergenic Intergenic -116595 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 386-46 chr11 10383453 10383757 + 2 NA intron (NR_103765, intron 2 of 3) LTR16|LTR|ERVL -66716 NM_001172431 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 439-249 chr6 84868525 84868831 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -104080 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 372-17 chr1 81076694 81077062 + 2 NA Intergenic LTR54|LTR|ERV1 -229314 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 270-150 chr17 21903800 21904033 + 2 NA Intergenic (ATGGAATGGA)n|Simple_repeat|Simple_repeat 211393 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 290-369 chr5 130949554 130949838 + 2 NA Intergenic L1PB|LINE|L1 215560 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 254-133 chr15 84977559 84977765 + 2 NA Intergenic Intergenic -2805 NM_001243137 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 350-408 chr5 120431179 120431390 + 2 NA Intergenic L1PA10|LINE|L1 -32994 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 246-234 chr20 54763172 54763337 + 2 NA Intergenic L1MC4|LINE|L1 287661 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 427-123 chr2 101606355 101606677 + 2 NA Intergenic L1MA6|LINE|L1 -91187 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 688-2 chr1 73622411 73622896 + 2 NA Intergenic MIR|SINE|MIR -52026 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 658-112 chr6 149121771 149122249 + 2 NA Intergenic L1MDa|LINE|L1 -89349 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 456-353 chrX 88678754 88679140 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -68278 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 315-440 chr7 45621943 45622108 + 2 NA intron (NM_001281768, intron 4 of 9) intron (NM_001281768, intron 4 of 9) 47657 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 498-206 chr5 3173352 3173724 + 2 NA Intergenic Intergenic -4297 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 156-43 chr17 13301682 13301777 + 2 NA intron (NR_146885, intron 2 of 4) intron (NR_146885, intron 2 of 4) 5031 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 446-136 chr19 32278599 32278996 + 2 NA Intergenic L1ME2|LINE|L1 -66813 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 422-220 chr4 115593357 115593726 + 2 NA Intergenic Intergenic -479921 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 309-331 chr22 42028886 42029093 + 2 NA TTS (NM_152613) TTS (NM_152613) 30201 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 472-195 chr21 30628946 30629333 + 2 NA Intergenic Intergenic -6067 NM_181616 337976 Hs.553698 NM_181616 ENSG00000184032 KRTAP20-2 KAP20.2 keratin associated protein 20-2 protein-coding 337-551 chr8 121108462 121108729 + 2 NA Intergenic L1MC1|LINE|L1 -296549 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 489-240 chr7 53061099 53061503 + 2 NA Intergenic Intergenic 25668 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 333-474 chr5 141393967 141394198 + 2 NA exon (NM_014004, exon 1 of 1) exon (NM_014004, exon 1 of 1) 2166 NM_014004 9708 Hs.368160 NM_014004 ENSG00000253767 PCDHGA8 PCDH-GAMMA-A8 protocadherin gamma subfamily A, 8 protein-coding 350-31 chr1 215181802 215182081 + 2 NA intron (NM_001017424, intron 5 of 6) L1PA11|LINE|L1 99204 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 502-286 chr9 79763280 79763718 + 2 NA Intergenic Intergenic -61031 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 412-342 chr9 27126788 27127032 + 2 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 17769 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 308-130 chr13 86768731 86768964 + 2 NA Intergenic Intergenic -143073 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 696-41 chr15 47542020 47542615 + 2 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -175188 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 558-231 chr9 33331279 33331628 + 2 NA intron (NM_002504, intron 10 of 23) intron (NM_002504, intron 10 of 23) 40937 NM_147134 4799 Hs.413074 NM_002504 ENSG00000086102 NFX1 NFX2|TEG-42|Tex42 nuclear transcription factor, X-box binding 1 protein-coding 390-368 chr8 18085196 18085499 + 2 NA promoter-TSS (NM_001127505) promoter-TSS (NM_001127505) -386 NM_004315 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 331-482 chr7 15261090 15261331 + 2 NA intron (NM_001004320, intron 12 of 12) L1PB1|LINE|L1 -286352 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 508-102 chr2 81326959 81327424 + 2 NA Intergenic Intergenic 139755 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 330-313 chr20 5408110 5408302 + 2 NA Intergenic Intergenic 37542 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 421-71 chr13 93568910 93569147 + 2 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 289445 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 251-390 chr8 83294671 83294873 + 2 NA Intergenic L1MC5a|LINE|L1 -108986 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 362-231 chr2 148317005 148317351 + 2 NA intron (NM_018328, intron 4 of 14) AluSp|SINE|Alu -295574 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 211-291 chr8 24097678 24097850 + 2 NA Intergenic Intergenic -196276 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 217-316 chr5 156129120 156129304 + 2 NA Intergenic Intergenic -197545 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 346-513 chr8 141711828 141712085 + 2 NA Intergenic Intergenic 74357 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 404-250 chr5 17482536 17482861 + 2 NA intron (NR_134270, intron 2 of 2) intron (NR_134270, intron 2 of 2) 38688 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 267-278 chr3 186509697 186509897 + 2 NA Intergenic Intergenic -16136 NR_033844 253573 Hs.97386 NR_033844 ENSG00000224406 LINC02052 - long intergenic non-protein coding RNA 2052 ncRNA 351-72 chr11 70513301 70513624 + 2 NA intron (NM_133266, intron 2 of 10) L1MEf|LINE|L1 114933 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 170-125 chr6 148295902 148296024 + 2 NA intron (NM_001346505, intron 1 of 19) intron (NM_001346505, intron 1 of 19) 23635 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 363-50 chr10 55363573 55363773 + 2 NA intron (NM_001354404, intron 2 of 34) AluSq2|SINE|Alu -235369 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 599-72 chr20 42339944 42340321 + 2 NA intron (NM_133170, intron 11 of 31) MER3|DNA|hAT-Charlie -345351 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 412-203 chr22 48769571 48769897 + 2 NA Intergenic L1M5|LINE|L1 -10561 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 147-76 chr6 23475253 23475326 + 2 NA Intergenic Intergenic -650926 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 706-28 chr15 62584851 62585427 + 2 NA Intergenic Intergenic 60042 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 388-352 chr8 120389755 120389997 + 2 NA Intergenic L1PB3|LINE|L1 55274 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 257-37 chr10 52178504 52178661 + 2 NA intron (NM_001098512, intron 9 of 17) L1MA5A|LINE|L1 135546 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 389-368 chr8 121013346 121013633 + 2 NA Intergenic Intergenic -201443 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 360-82 chr12 20731552 20731821 + 2 NA intron (NM_017435, intron 9 of 14) intron (NM_017435, intron 9 of 14) 36221 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 417-230 chr5 160130697 160131024 + 2 NA Intergenic Intergenic -11410 NR_146216 114825 Hs.744960 NM_052927 ENSG00000170234 PWWP2A MST101 PWWP domain containing 2A protein-coding 230-122 chr14 88844172 88844338 + 2 NA intron (NM_198310, intron 6 of 13) L1MC5|LINE|L1 19604 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 328-556 chr8 46068910 46069201 + 2 NA Intergenic ALR/Alpha|Satellite|centr 548588 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 475-6 chr1 104475400 104475806 + 2 NA Intergenic Intergenic 402580 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 649-115 chr8 137310047 137310517 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 103306 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 293-179 chr2 22271673 22271872 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -264707 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 391-252 chr4 33572827 33573038 + 2 NA Intergenic Intergenic 466961 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 215-240 chr4 140014280 140014423 + 2 NA intron (NM_018717, intron 1 of 4) intron (NM_018717, intron 1 of 4) -113664 NR_147610 101927516 Hs.662570 NR_147610 LOC101927516 - uncharacterized LOC101927516 ncRNA 676-57 chr2 78936891 78937426 + 2 NA Intergenic Intergenic -88544 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 204-28 chr10 93259384 93259540 + 2 NA Intergenic MIRb|SINE|MIR 185569 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 375-71 chr11 40236673 40236904 + 2 NA intron (NM_020929, intron 3 of 4) MLT1J1|LTR|ERVL-MaLR 56342 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 265-128 chr15 100746021 100746184 + 2 NA Intergenic L1MCa|LINE|L1 -103650 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 372-207 chr19 29387366 29387617 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) 138261 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 262-382 chr6 115669174 115669340 + 2 NA Intergenic Intergenic -25422 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 366-425 chr8 26909279 26909575 + 2 NA Intergenic Intergenic -42149 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 382-304 chr4 97067100 97067341 + 2 NA Intergenic Intergenic -299706 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 391-265 chr4 112481165 112481425 + 2 NA Intergenic L1MEc|LINE|L1 -34084 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 319-207 chr18 59797252 59797504 + 2 NA Intergenic Intergenic -99955 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 216-183 chr2 181159491 181159701 + 2 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 35759 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 332-409 chr5 44291103 44291321 + 2 NA Intergenic L1M5|LINE|L1 -97520 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 437-44 chr11 88613392 88613782 + 2 NA intron (NM_001143831, intron 3 of 8) L1PA2|LINE|L1 109011 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 477-297 chr9 21524419 21524823 + 2 NA intron (NR_152877, intron 1 of 3) L1PA13|LINE|L1 -12436 NR_029505 407035 NR_029505 ENSG00000199177 MIR31 MIRN31|hsa-mir-31|miR-31 microRNA 31 ncRNA 399-53 chr11 42141444 42141687 + 2 NA Intergenic Intergenic -56107 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 196-31 chr10 74741191 74741384 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -83968 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 293-162 chr18 31213016 31213194 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -50249 NM_024421 1823 Hs.567260 NM_004948 ENSG00000134765 DSC1 CDHF1|DG2/DG3 desmocollin 1 protein-coding 146-73 chr5 113997498 113997609 + 2 NA Intergenic Intergenic -364517 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 285-312 chr4 124780575 124780790 + 2 NA Intergenic L1MEi|LINE|L1 -67950 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 382-125 chr15 96481966 96482301 + 2 NA Intergenic L1ME1|LINE|L1 148368 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 339-521 chr7 14104541 14104738 + 2 NA Intergenic MER51A|LTR|ERV1 -113214 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 195-16 chr1 231984562 231984712 + 2 NA intron (NM_001164538, intron 10 of 10) L2b|LINE|L2 58803 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 330-245 chr19 56653617 56653906 + 2 NA intron (NR_163263, intron 4 of 4) intron (NR_163263, intron 4 of 4) 10602 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 354-390 chr5 169844025 169844334 + 2 NA intron (NR_156756, intron 27 of 52) LTR57|LTR|ERVL 136316 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 360-200 chr2 14002308 14002609 + 2 NA Intergenic L1MA9|LINE|L1 398500 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 195-167 chr4 78300338 78300483 + 2 NA intron (NM_001166133, intron 14 of 41) L2a|LINE|L2 11425 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 260-346 chr5 36201389 36201565 + 2 NA intron (NM_001085411, intron 8 of 11) L1ME4b|LINE|L1 39914 NM_001287340 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 545-134 chr21 44691930 44692289 + 2 NA intron (NM_001272037, intron 1 of 12) L1M4|LINE|L1 -5063 NM_198699 386685 Hs.297526 NM_198699 ENSG00000189169 KRTAP10-12 KAP10.12|KRTAP18-12|KRTAP18.12 keratin associated protein 10-12 protein-coding 275-229 chr20 59719387 59719592 + 2 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) -1721 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 456-174 chr2 215216306 215216607 + 2 NA Intergenic MIRb|SINE|MIR -77830 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 652-115 chr8 53599240 53599597 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -75453 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 361-38 chr10 35700446 35700720 + 2 NA Intergenic LTR9B|LTR|ERV1 -59149 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 275-152 chr18 1441798 1441955 + 2 NA Intergenic L1M7|LINE|L1 -82247 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 355-449 chr7 4495729 4495973 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -186444 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 468-7 chr1 78554286 78554689 + 2 NA Intergenic L1PA17|LINE|L1 63513 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 312-160 chr15 47770740 47770996 + 2 NA exon (NM_001358352, exon 19 of 19) exon (NM_001358352, exon 19 of 19) 52379 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 278-81 chr12 118875227 118875458 + 2 NA Intergenic LTR16E2|LTR|ERVL -41806 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 360-359 chr5 41539697 41539926 + 2 NA Intergenic Intergenic -29210 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 368-157 chr14 87319197 87319509 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger 335941 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 315-483 chr8 100077100 100077356 + 2 NA intron (NM_015668, intron 4 of 27) L1MEc|LINE|L1 28398 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 288-107 chr13 109589907 109590176 + 2 NA Intergenic L3|LINE|CR1 -138233 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 414-127 chr17_KI270859v1_alt 31242 31462 + 2 NA NA Intergenic NA NA 228-43 chr10 83851252 83851411 + 2 NA Intergenic Intergenic -174242 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 261-158 chr18 32802870 32803127 + 2 NA Intergenic Intergenic -29975 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 366-378 chr6 96426135 96426406 + 2 NA Intergenic L1MA3|LINE|L1 -95536 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 559-43 chr13 66736309 66736760 + 2 NA intron (NM_020403, intron 2 of 3) MLT1B|LTR|ERVL-MaLR -88635 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 535-82 chr15 20202923 20203334 + 2 NA Intergenic HAL1M8|LINE|L1 -79616 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 184-152 chr7 12467550 12467690 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -28809 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 476-72 chr13 63248253 63248705 + 2 NA intron (NR_126409, intron 3 of 6) intron (NR_126409, intron 3 of 6) 79615 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 716-17 chr12 38003973 38004405 + 2 NA Intergenic ALR/Alpha|Satellite|centr -312585 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 372-440 chr6 107371721 107372010 + 2 NA intron (NM_020381, intron 1 of 7) MIRb|SINE|MIR 87699 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 272-28 chr1 237363326 237363506 + 2 NA intron (NM_001035, intron 4 of 104) intron (NM_001035, intron 4 of 104) -107703 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 265-124 chr15 83763999 83764219 + 2 NA intron (NM_207517, intron 3 of 29) L2b|LINE|L2 109986 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 455-98 chr17 70132893 70133291 + 2 NA exon (NM_001291622, exon 6 of 6) exon (NM_001291622, exon 6 of 6) 28247 NM_001291625 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 282-109 chr13 38210999 38211244 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -67889 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 410-274 chr7 10753279 10753539 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 26535 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 529-66 chr14 52600097 52600421 + 2 NA exon (NM_001099652, exon 3 of 7) exon (NM_001099652, exon 3 of 7) 47423 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 179-26 chr14 70016247 70016351 + 2 NA intron (NM_001034852, intron 10 of 11) intron (NM_001034852, intron 10 of 11) 38166 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 487-88 chr14 66225243 66225706 + 2 NA Intergenic LTR1A1|LTR|ERV1 -260897 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 423-135 chr2 89841531 89841936 + 2 NA Intergenic Intergenic -203826 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 199-153 chr22 47724550 47724697 + 2 NA intron (NR_122046, intron 7 of 8) LTR34|LTR|ERV1 92949 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 693-62 chr2 186228765 186229249 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -142690 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 301-26 chr1 216113287 216113475 + 2 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 40916 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 314-225 chr17 52491973 52492197 + 2 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 101563 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 426-206 chr4 60457459 60457692 + 2 NA Intergenic Intergenic -465044 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 398-102 chr14 54000794 54001150 + 2 NA Intergenic Intergenic -44081 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 323-27 chr1 177738970 177739169 + 2 NA Intergenic L2c|LINE|L2 38545 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 368-25 chr1 169636558 169636879 + 2 NA Intergenic L1MA8|LINE|L1 -6594 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 272-482 chr9 118830199 118830421 + 2 NA Intergenic L1M4c|LINE|L1 150639 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 417-265 chr7 64412592 64412918 + 2 NA Intergenic Intergenic -20938 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 346-19 chr1 116679339 116679667 + 2 NA Intergenic Intergenic 7757 NR_031564 100302117 NR_031564 ENSG00000211543 MIR320B1 MIR320B-1|MIRN320B1|hsa-mir-320b-1|mir-320b-1 microRNA 320b-1 ncRNA 241-335 chr6 74088145 74088328 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 18785 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 488-10 chr1 90675708 90676190 + 2 NA Intergenic L1MEf|LINE|L1 18199 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 395-220 chr3 53562384 53562728 + 2 NA intron (NM_001128840, intron 3 of 47) L1MB7|LINE|L1 67945 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 258-13 chr1 109946331 109946494 + 2 NA Intergenic LTR103b_Mam|LTR|ERV1? 35563 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 353-178 chr16 65246799 65247087 + 2 NA Intergenic L2b|LINE|L2 -70370 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 434-162 chr20 35426491 35426906 + 2 NA Intergenic Intergenic -6331 NR_161326 554250 Hs.711481 NM_001350519 ENSG00000204183 GDF5OS - growth differentiation factor 5 opposite strand ncRNA 656-5 chr1 80390073 80390520 + 2 NA Intergenic L1MA5|LINE|L1 -145459 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 209-311 chr8 24689322 24689485 + 2 NA Intergenic L1MEc|LINE|L1 -140785 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 274-48 chr10 67801070 67801237 + 2 NA intron (NM_021800, intron 4 of 4) intron (NM_021800, intron 4 of 4) 37026 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 319-470 chr6 110146550 110146714 + 2 NA intron (NM_001024936, intron 1 of 8) intron (NM_001024936, intron 1 of 8) 33038 NM_003931 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WASP family member 1 protein-coding 500-150 chr2 136847010 136847476 + 2 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 81698 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 164-67 chr21 29217931 29218028 + 2 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 24485 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 323-307 chr21 31920249 31920417 + 2 NA intron (NM_014586, intron 1 of 10) MLT1D|LTR|ERVL-MaLR 47313 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 335-185 chr16 27873897 27874178 + 2 NA intron (NM_001323901, intron 2 of 5) intron (NM_001323901, intron 2 of 5) 14120 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 558-83 chr18 77784617 77785047 + 2 NA Intergenic Intergenic 208895 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 300-371 chr5 140878282 140878568 + 2 NA TTS (NM_031864) TTS (NM_031864) 3117 NM_031864 56137 Hs.199343 NM_018903 ENSG00000251664 PCDHA12 PCDH-ALPHA12 protocadherin alpha 12 protein-coding 312-305 chr21 30786829 30787064 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 26328 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 338-243 chr2 14470326 14470624 + 2 NA Intergenic L1MA8|LINE|L1 -69517 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 306-438 chr6 80444863 80445038 + 2 NA Intergenic Intergenic 338279 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 247-258 chr3 53993831 53994040 + 2 NA Intergenic Intergenic -102076 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 353-73 chr10 108730397 108730719 + 2 NA Intergenic HERVK14-int|LTR|ERVK -661265 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 309 chr1 30625254 30625441 + 2 NA Intergenic L1MEd|LINE|L1 -93425 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 322-391 chr4 122413903 122414122 + 2 NA intron (NM_001159285, intron 9 of 11) intron (NM_001159285, intron 9 of 11) 34494 NM_001159285 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 264-388 chr7 62962322 62962579 + 2 NA Intergenic ALR/Alpha|Satellite|centr 341606 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 233-216 chr22 33954107 33954292 + 2 NA Intergenic MIR|SINE|MIR -31311 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 226-349 chr8 91644036 91644204 + 2 NA Intergenic Intergenic 373560 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 473-152 chr2 218058182 218058619 + 2 NA TTS (NR_002712) TTS (NR_002712) 2890 NR_002712 3580 Hs.647858 NR_002712 CXCR2P1 CXCR2P|IL8RBP C-X-C motif chemokine receptor 2 pseudogene 1 pseudo 311-534 chr8 141833894 141834068 + 2 NA Intergenic L1ME2|LINE|L1 -47668 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 469-144 chr2 130905873 130906219 + 2 NA intron (NM_001367493, intron 1 of 13) L1MD3|LINE|L1 69132 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 675-93 chr8 51123203 51123774 + 2 NA Intergenic Intergenic 685957 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 415-158 chr20 39223901 39224110 + 2 NA intron (NR_027124, intron 1 of 3) intron (NR_027124, intron 1 of 3) 743 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 185-29 chr10 95309568 95309723 + 2 NA Intergenic Intergenic -18642 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 361-345 chr5 4447743 4448102 + 2 NA Intergenic L1ME1|LINE|L1 -325559 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 278-307 chr4 45449947 45450160 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 674001 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 299-94 chr11 134548964 134549170 + 2 NA Intergenic L1MC2|LINE|L1 112585 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 131-83 chr9 102741660 102741786 + 2 NA Intergenic L1MEc|LINE|L1 222086 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 321-521 chr7 29763923 29764142 + 2 NA Intergenic Intergenic -42522 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 351-221 chr2 80536206 80536452 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 222950 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 247-406 chr8 89701931 89702112 + 2 NA Intergenic L2a|LINE|L2 55690 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 369-170 chr19 9287261 9287510 + 2 NA Intergenic L1MA7|LINE|L1 22453 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 305-308 chr20 40841709 40841902 + 2 NA Intergenic MIRb|SINE|MIR -127182 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 249-433 chr8 132596371 132596573 + 2 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -34993 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 288-359 chr6 35853125 35853364 + 2 NA intron (NM_003137, intron 13 of 15) AluJr4|SINE|Alu 47892 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 230-63 chr11 87567937 87568100 + 2 NA Intergenic L1PB1|LINE|L1 151393 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 340-202 chr17 58162249 58162518 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 5424 NR_002307 55545 Hs.381329 NR_002307 MSX2P1 HPX5|HSHPX5|MSX2P msh homeobox 2 pseudogene 1 pseudo 276-339 chr4 70289501 70289643 + 2 NA Intergenic Intergenic -45409 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 173-107 chr5 18118672 18118777 + 2 NA Intergenic Intergenic 311450 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 695-12 chr10 44323287 44323744 + 2 NA Intergenic Intergenic 30765 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 291-438 chr8 61933349 61933598 + 2 NA Intergenic Intergenic 43634 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 313-530 chr8 89264477 89264692 + 2 NA Intergenic Intergenic 493127 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 739-39 chr2 120851371 120851937 + 2 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 59373 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 290-135 chr14 69849259 69849461 + 2 NA Intergenic Intergenic -30056 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 129-72 chr7 41832222 41832342 + 2 NA Intergenic L1ME1|LINE|L1 -129192 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 229-133 chr16 8512633 8512835 + 2 NA Intergenic Intergenic 77104 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 189-163 chr5 67886374 67886527 + 2 NA Intergenic Intergenic 93237 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 486-279 chr7 48063590 48063990 + 2 NA Intergenic L1MC4|LINE|L1 -24813 NM_001287426 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 355-364 chr4 59182638 59182970 + 2 NA Intergenic L1MB7|LINE|L1 169231 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 246-290 chr4 36988603 36988789 + 2 NA Intergenic L1ME1|LINE|L1 -13083 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 421-101 chr16 80918143 80918488 + 2 NA Intergenic Intergenic -25719 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 112-7 chr11 82224523 82224627 + 2 NA intron (NR_120571, intron 3 of 7) L1MB1|LINE|L1 179338 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 406-165 chr20 38274705 38275106 + 2 NA intron (NR_104170, intron 1 of 1) L1MC3|LINE|L1 -14170 NM_001029864 85449 Hs.472690 NM_001029864 ENSG00000149633 KIAA1755 - KIAA1755 protein-coding 715-80 chr6 138699977 138700456 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner 8548 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 299-96 chr12 9603207 9603377 + 2 NA intron (NM_002258, intron 1 of 5) intron (NM_002258, intron 1 of 5) 4624 NM_002258 3820 Hs.169824 NM_002258 ENSG00000111796 KLRB1 CD161|CLEC5B|NKR|NKR-P1|NKR-P1A|NKRP1A|hNKR-P1A killer cell lectin like receptor B1 protein-coding 436-327 chr9 10843427 10843767 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 230391 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 338-508 chr7 71436612 71436816 + 2 NA intron (NM_022479, intron 5 of 10) AluY|SINE|Alu -128944 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 636-16 chr10 35396313 35396877 + 2 NA intron (NM_001282853, intron 2 of 10) intron (NM_001282853, intron 2 of 10) 59721 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 354-329 chr4 60390521 60390720 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -531999 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 358-443 chr7 64505271 64505564 + 2 NA Intergenic Intergenic 57654 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 520-149 chr2 107224871 107225320 + 2 NA intron (NR_049853, intron 2 of 3) (TA)n|Simple_repeat|Simple_repeat 124430 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 220-230 chr3 78188668 78188838 + 2 NA Intergenic MIR3|SINE|MIR -139790 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 514-190 chr3 104018142 104018654 + 2 NA Intergenic Intergenic -494282 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 265-248 chr3 128940662 128940842 + 2 NA intron (NM_001348520, intron 9 of 14) L1ME3G|LINE|L1 51145 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 486-287 chr8 4659993 4660427 + 2 NA intron (NM_033225, intron 1 of 69) L1MD1|LINE|L1 334704 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 265-134 chr16 12265459 12265650 + 2 NA intron (NM_032167, intron 14 of 20) intron (NM_032167, intron 14 of 20) 288820 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 559-194 chr8 134080134 134080548 + 2 NA Intergenic L1MD1|LINE|L1 193845 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 439-231 chr5 41248415 41248796 + 2 NA intron (NM_001115131, intron 1 of 17) L1PA16|LINE|L1 12864 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 288-361 chr6 48497281 48497499 + 2 NA Intergenic Intergenic -428701 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 436-231 chr5 17257244 17257638 + 2 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 39810 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 296-183 chr17 53085224 53085423 + 2 NA Intergenic L2c|LINE|L2 99818 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 198-158 chr3 27673460 27673618 + 2 NA Intergenic L1M4b|LINE|L1 48784 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 360-164 chr17 3211131 3211451 + 2 NA Intergenic Intergenic -4330 NM_014565 8383 Hs.532688 NM_014565 ENSG00000172146 OR1A1 OR17-7 olfactory receptor family 1 subfamily A member 1 protein-coding 257-107 chr14 55971330 55971478 + 2 NA Intergenic Intergenic -147007 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 259-317 chr5 64950057 64950250 + 2 NA intron (NM_005869, intron 11 of 13) MER33|DNA|hAT-Charlie 181223 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 542-134 chr3 86602568 86602973 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 120827 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 306-510 chr8 91668900 91669088 + 2 NA Intergenic Intergenic 348686 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 307-193 chr17 71232474 71232716 + 2 NA Intergenic Intergenic -30416 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 186-181 chrX 64131432 64131602 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 74191 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 348-281 chr22 47518578 47518892 + 2 NA Intergenic L1MEg|LINE|L1 -31624 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 243-189 chr19 36486058 36486286 + 2 NA intron (NM_001145344, intron 1 of 4) L1MC4a|LINE|L1 3263 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 417-109 chr17 68423157 68423499 + 2 NA TTS (NM_001352901) TTS (NM_001352901) 1220 NR_030365 693220 NR_030365 ENSG00000207561 MIR635 MIRN635|hsa-mir-635 microRNA 635 ncRNA 500-57 chr11 95903402 95903864 + 2 NA intron (NM_016156, intron 1 of 14) L2|LINE|L2 20474 NM_001243571 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 300-191 chr2 63636047 63636288 + 2 NA Intergenic L1MA9|LINE|L1 47016 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 366-358 chr5 155697208 155697425 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -629441 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 387-74 chr12 15449001 15449269 + 2 NA intron (NM_030667, intron 1 of 26) MER57A1|LTR|ERV1 -97476 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 226-211 chr3 2175308 2175483 + 2 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -31154 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 475-58 chr12 32197469 32197904 + 2 NA intron (NR_148725, intron 1 of 9) intron (NR_148725, intron 1 of 9) 90839 NM_001354189 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 270-303 chr5 68582319 68582541 + 2 NA Intergenic Intergenic 289853 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 290-349 chr5 81036562 81036747 + 2 NA intron (NM_006909, intron 1 of 26) HAL1|LINE|L1 -75747 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 632-71 chr3 20892998 20893604 + 2 NA Intergenic Intergenic -512425 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 243-484 chr9 138033043 138033225 + 2 NA intron (NM_001243812, intron 20 of 45) L1MC2|LINE|L1 11937 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 363-158 chr15 72826921 72827271 + 2 NA Intergenic Intergenic -43338 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 284-463 chrX 145397438 145397697 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 150064 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 133-83 chr8 131331015 131331116 + 2 NA Intergenic Intergenic -290156 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 218-246 chr4 83878674 83878794 + 2 NA Intergenic L2b|LINE|L2 342626 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 534-102 chr19 43841964 43842337 + 2 NA intron (NM_181845, intron 6 of 6) L1MEf|LINE|L1 14829 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 371-395 chr8 130228630 130228982 + 2 NA intron (NM_001362925, intron 4 of 29) intron (NM_001362925, intron 4 of 29) 67727 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 336-218 chr17 79644248 79644545 + 2 NA Intergenic L1MEf|LINE|L1 -33345 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 212-309 chr7 84784974 84785169 + 2 NA Intergenic Intergenic 252595 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 466-45 chr11 5905418 5905825 + 2 NA Intergenic L1PB1|LINE|L1 4856 NM_001005166 390082 NM_001005166 ENSG00000277932 OR52E5 OR11-56 olfactory receptor family 52 subfamily E member 5 protein-coding 299-488 chr9 89109957 89110149 + 2 NA intron (NM_016848, intron 2 of 11) intron (NM_016848, intron 2 of 11) 68765 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 361-251 chr2 241023429 241023737 + 2 NA intron (NM_001080437, intron 1 of 31) L1MA9|LINE|L1 24965 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 154-33 chr14 68250530 68250651 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 378197 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 566-65 chr17 16626234 16626719 + 2 NA intron (NM_020787, intron 5 of 5) AluJo|SINE|Alu 27374 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 748-29 chr14 54134474 54135053 + 2 NA Intergenic Intergenic -177872 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 465-280 chr7 113469055 113469366 + 2 NA Intergenic Intergenic -350628 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 380-224 chr21 19344391 19344740 + 2 NA Intergenic Intergenic 555190 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 475-25 chr10 54632576 54632965 + 2 NA intron (NR_134503, intron 4 of 5) intron (NR_134503, intron 4 of 5) -24813 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 349-72 chr10 78896805 78897075 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 170508 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 394-338 chr9 27773932 27774245 + 2 NA Intergenic L2a|LINE|L2 -200222 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 271-368 chr6 19515851 19516010 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 66109 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 522-271 chr9 78159393 78159769 + 2 NA Intergenic L1ME1|LINE|L1 -76494 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 406-14 chr1 147289628 147289990 + 2 NA intron (NM_001348462, intron 19 of 22) intron (NM_001348462, intron 19 of 22) 46667 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 214-297 chr7 45219818 45220020 + 2 NA Intergenic Intergenic 62128 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 249-102 chr13 59467693 59467846 + 2 NA Intergenic MLT2C1|LTR|ERVL -544949 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 162-36 chr14 70175222 70175327 + 2 NA intron (NM_033262, intron 1 of 7) MIR|SINE|MIR -11834 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 327-292 chr20 10761003 10761219 + 2 NA Intergenic Intergenic 8021 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 270-288 chr5 18648744 18648984 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 841590 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 238-305 chr5 150832992 150833175 + 2 NA Intergenic AluYj4|SINE|Alu -13438 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 524-145 chr3 4915175 4915644 + 2 NA intron (NR_125916, intron 1 of 2) intron (NR_125916, intron 1 of 2) -8908 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 299-266 chr22 32256084 32256290 + 2 NA promoter-TSS (NM_014227) promoter-TSS (NM_014227) -840 NM_014227 6527 Hs.130101 NM_014227 ENSG00000100191 SLC5A4 DJ90G24.4|SAAT1|SGLT3 solute carrier family 5 member 4 protein-coding 252-243 chr22 25096417 25096629 + 2 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 16169 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 206-295 chrX 138303081 138303241 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 364632 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 292-144 chr14 83811596 83811858 + 2 NA Intergenic Intergenic 1169095 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 216-3 chr1 21026179 21026334 + 2 NA intron (NM_003760, intron 2 of 31) L1MB3|LINE|L1 -37824 NR_031657 100302155 NR_031657 ENSG00000221808 MIR1256 MIRN1256|hsa-mir-1256 microRNA 1256 ncRNA 240-418 chr8 115306512 115306694 + 2 NA Intergenic L2a|LINE|L2 361410 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 262-62 chr10 96581274 96581525 + 2 NA intron (NM_020123, intron 1 of 14) intron (NM_020123, intron 1 of 14) 5613 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 220-387 chr8 143208882 143209064 + 2 NA Intergenic Intergenic -4245 NM_001301772 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 604-10 chr10 30208216 30208614 + 2 NA Intergenic Intergenic -3437 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 351-333 chr4 22812379 22812593 + 2 NA intron (NR_102357, intron 4 of 4) intron (NR_102357, intron 4 of 4) 98397 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 258-251 chr3 33279771 33279957 + 2 NA intron (NM_012157, intron 1 of 14) MIR|SINE|MIR 2422 NR_146133 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 330-159 chr14 61053097 61053361 + 2 NA TTS (NM_153811) TTS (NM_153811) -71539 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 1179-3 chr3 193954051 193954862 + 2 NA Intergenic L1MA5|LINE|L1 39782 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 249-360 chr6 130677280 130677462 + 2 NA Intergenic Intergenic -150034 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 382-61 chr11 56973491 56973736 + 2 NA Intergenic L1PA16|LINE|L1 -15301 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 171-83 chr3 110307426 110307565 + 2 NA Intergenic Intergenic 704667 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 196-197 chr5 13882671 13882811 + 2 NA exon (NM_001369, exon 21 of 79) exon (NM_001369, exon 21 of 79) 61739 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 389-80 chr12 58186233 58186569 + 2 NA Intergenic Intergenic 98509 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 304-19 chr1 116701276 116701447 + 2 NA intron (NR_149353, intron 2 of 3) L1MEc|LINE|L1 7249 NR_149353 388667 Hs.127851 NR_149353 ENSG00000203864 C1orf137 - chromosome 1 open reading frame 137 (putative) ncRNA 182-175 chr8 136491875 136492036 + 2 NA Intergenic Intergenic -38843 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 559-140 chr4 127122728 127123092 + 2 NA Intergenic MIRb|SINE|MIR -510047 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 287-288 chr4 96451396 96451644 + 2 NA non-coding (NR_147149, exon 2 of 4) non-coding (NR_147149, exon 2 of 4) 140817 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 490-217 chr5 68070266 68070681 + 2 NA Intergenic Intergenic -119403 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 214-329 chr8 109429012 109429157 + 2 NA intron (NM_177531, intron 25 of 77) intron (NM_177531, intron 25 of 77) 66623 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 334-417 chr5 33015671 33015950 + 2 NA Intergenic Intergenic 68367 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 227-270 chr4 179635091 179635210 + 2 NA Intergenic Intergenic 1523999 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 147-61 chr3 118292627 118292766 + 2 NA Intergenic L1MEc|LINE|L1 -349072 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 268-349 chr6 86345769 86345949 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -591669 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 304-251 chr2 60139421 60139612 + 2 NA Intergenic Chap1_Mam|DNA|hAT-Charlie 243520 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 316-187 chr15 87336978 87337278 + 2 NA Intergenic L1MC3|LINE|L1 -239801 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 276-171 chr15 87372067 87372260 + 2 NA Intergenic L1PB2|LINE|L1 -204766 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 234-196 chr2 187101174 187101352 + 2 NA Intergenic Intergenic -252093 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 299-104 chr12 63120465 63120737 + 2 NA Intergenic Intergenic 32209 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 231-10 chr1 70866843 70867040 + 2 NA intron (NR_028294, intron 3 of 5) intron (NR_028294, intron 3 of 5) 160488 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 390-127 chr16 46467650 46467965 + 2 NA Intergenic Intergenic 101290 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 285-190 chr2 17093928 17094185 + 2 NA Intergenic Intergenic 424384 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 247-33 chr10 18275272 18275465 + 2 NA intron (NM_000724, intron 1 of 12) intron (NM_000724, intron 1 of 12) 14646 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 443-49 chr11 40670323 40670611 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -377337 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 176-102 chr5 31624186 31624321 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -14878 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 469-5 chr1 42150032 42150428 + 2 NA Intergenic L2|LINE|L2 -3180 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 566-41 chr12 118697170 118697643 + 2 NA Intergenic MIRb|SINE|MIR 64273 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 563-2 chr1 56065029 56065439 + 2 NA Intergenic Intergenic 120147 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 290-322 chr4 104230383 104230657 + 2 NA Intergenic LTR41C|LTR|ERVL -260445 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 450-16 chr1 209897565 209897835 + 2 NA Intergenic Intergenic -40474 NM_001146261 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 449-136 chr2 223247300 223247667 + 2 NA Intergenic Intergenic 195553 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 405-156 chr2 132830280 132830575 + 2 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -85130 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 761-2 chr1 34061708 34062404 + 2 NA intron (NM_052896, intron 2 of 69) intron (NM_052896, intron 2 of 69) 103218 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 265-232 chr3 4098068 4098313 + 2 NA Intergenic Intergenic -205114 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 397-6 chr1 75901221 75901446 + 2 NA intron (NM_002440, intron 19 of 19) L1MA4|LINE|L1 31071 NR_026546 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 300-483 chr8 140234666 140234869 + 2 NA intron (NM_001160372, intron 16 of 22) L2a|LINE|L2 -134232 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 296-500 chr9 115756153 115756407 + 2 NA Intergenic Intergenic -12041 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 292-358 chr5 120646668 120646856 + 2 NA intron (NM_001308088, intron 3 of 3) intron (NM_001308088, intron 3 of 3) 115298 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 289-183 chr18 4742327 4742483 + 2 NA Intergenic L1PB2|LINE|L1 -287098 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 772-27 chr18 13945026 13945626 + 2 NA Intergenic AluY|SINE|Alu -29619 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 281-422 chr7 111649575 111649786 + 2 NA Intergenic Intergenic -87163 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 297-330 chr4 65763742 65763944 + 2 NA Intergenic L1PA13|LINE|L1 -93348 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 274-203 chr2 56700865 56701022 + 2 NA Intergenic Intergenic -515173 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 706-13 chr11 120087439 120087968 + 2 NA Intergenic Intergenic 41150 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 620-148 chr8 117580119 117580548 + 2 NA Intergenic Intergenic 59620 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 245-216 chr20 12269828 12270022 + 2 NA Intergenic LTR16A1|LTR|ERVL 352032 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 313-471 chr6 89130284 89130503 + 2 NA Intergenic AluJb|SINE|Alu -12322 NM_080743 135295 Hs.254414 NM_080743 ENSG00000154548 SRSF12 SFRS13B|SFRS19|SRrp35 serine and arginine rich splicing factor 12 protein-coding 329-156 chr14 46847288 46847555 + 2 NA intron (NM_001113498, intron 15 of 16) intron (NM_001113498, intron 15 of 16) -195640 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 344-113 chr12 99618617 99618819 + 2 NA intron (NM_152788, intron 9 of 25) L1PA17|LINE|L1 -29035 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 369-164 chr18 46884038 46884342 + 2 NA intron (NR_136685, intron 1 of 11) L1ME3E|LINE|L1 33317 NR_136685 9063 Hs.57769 NM_004671 ENSG00000078043 PIAS2 ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4 protein inhibitor of activated STAT 2 protein-coding 325-443 chr5 66389292 66389506 + 2 NA Intergenic L1PB2|LINE|L1 122205 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 568-59 chr15 25049838 25050239 + 2 NA intron (NR_146177, intron 23 of 147) L1M3|LINE|L1 -1438 NR_003316 100033413 NR_003316 ENSG00000207063 SNORD116-1 HBII-85-1|PWCR1 small nucleolar RNA, C/D box 116-1 snoRNA 334-118 chr12 118639715 118640017 + 2 NA Intergenic MER113A|DNA|hAT-Charlie 121813 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 167-34 chr14 27585791 27585920 + 2 NA intron (NR_148991, intron 2 of 2) MIRb|SINE|MIR -26733 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 204-56 chr12 44342011 44342172 + 2 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 506010 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 310-370 chr4 71038408 71038599 + 2 NA Intergenic L1MC1|LINE|L1 44854 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 488-81 chr14 70791088 70791494 + 2 NA intron (NM_033141, intron 2 of 12) intron (NM_033141, intron 2 of 12) -7839 NM_001284232 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 787-21 chr2 150543807 150544407 + 2 NA Intergenic HAL1|LINE|L1 28114 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 279-218 chr20 30462025 30462286 + 2 NA Intergenic ALR/Alpha|Satellite|centr -58693 NR_045115 140678 Hs.653099 NR_045115 MLLT10P1 MLLT10L|bA348I14.3 MLLT10 pseudogene 1 pseudo 382-97 chr13 90990252 90990484 + 2 NA Intergenic LTR40b|LTR|ERVL -63771 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 386-164 chr2 40787402 40787774 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -275153 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 232-127 chr16 83345503 83345706 + 2 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -162742 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 528-185 chr4 111709562 111710029 + 2 NA Intergenic Intergenic -435659 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 321-23 chr1 150200920 150201130 + 2 NA Intergenic AluSz|SINE|Alu 33653 NM_001136479 81611 Hs.656466 NM_030920 ENSG00000143401 ANP32E LANP-L|LANPL acidic nuclear phosphoprotein 32 family member E protein-coding 388-285 chr5 84762858 84763217 + 2 NA Intergenic L1M1|LINE|L1 -378157 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 307-319 chr3 167263307 167263577 + 2 NA intron (NM_001199202, intron 19 of 20) L1M1|LINE|L1 116841 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 367-68 chr10 126728614 126728879 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -58236 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 444-219 chr6 65385160 65385526 + 2 NA intron (NM_198283, intron 6 of 9) intron (NM_198283, intron 6 of 9) 83925 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 343-486 chr6 149238937 149239231 + 2 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) 18467 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 264-389 chr7 80725851 80725986 + 2 NA Intergenic Intergenic 79265 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 291-44 chr10 37765362 37765565 + 2 NA intron (NR_148006, intron 7 of 7) Tigger6a|DNA|TcMar-Tigger 29712 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 268-290 chr4 119673931 119674097 + 2 NA Intergenic L2a|LINE|L2 -45210 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 223-349 chr8 103949798 103949944 + 2 NA intron (NR_145711, intron 11 of 21) L1M5|LINE|L1 130651 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 478-251 chr6 55541302 55541695 + 2 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 37716 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 506-48 chr10 125383854 125384216 + 2 NA Intergenic L1PA15|LINE|L1 -190336 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 257-371 chr7 2646249 2646473 + 2 NA intron (NM_025250, intron 1 of 13) MIRc|SINE|MIR 14375 NM_025250 80727 Hs.440899 NM_025250 ENSG00000136295 TTYH3 - tweety family member 3 protein-coding 238-165 chr2 42455002 42455161 + 2 NA intron (NM_172344, intron 1 of 1) intron (NM_172344, intron 1 of 1) 38901 NM_133329 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 621-87 chr4 153687592 153688107 + 2 NA intron (NM_001318791, intron 1 of 2) MER57D|LTR|ERV1 3569 NM_001318787 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 206-241 chr6 140861432 140861588 + 2 NA Intergenic L1MEd|LINE|L1 177696 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 391-73 chr12 25535638 25535876 + 2 NA intron (NM_152590, intron 3 of 8) L1MEc|LINE|L1 17526 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 287-188 chr2 30741919 30742093 + 2 NA intron (NM_144575, intron 14 of 22) intron (NM_144575, intron 14 of 22) 65440 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 493-164 chr2 136464670 136464981 + 2 NA Intergenic L1M6|LINE|L1 -300720 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 219-57 chr11 100459643 100459809 + 2 NA Intergenic Intergenic -227562 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 264-284 chr3 162290696 162290878 + 2 NA Intergenic Intergenic 793979 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 314-571 chr8 89064017 89064210 + 2 NA Intergenic L1MA2|LINE|L1 693598 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 326-479 chr7 347359 347533 + 2 NA Intergenic Intergenic -31979 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 316-341 chr3 33710256 33710449 + 2 NA intron (NM_001365634, intron 1 of 35) intron (NM_001365634, intron 1 of 35) 7902 NM_001365629 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 383-117 chr14 72657909 72658220 + 2 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 141244 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 799-43 chr4 96049535 96050095 + 2 NA Intergenic L1MA6|LINE|L1 209722 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 283-74 chr11 23531275 23531509 + 2 NA Intergenic L1M4c|LINE|L1 -112202 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 292-417 chr7 106208505 106208693 + 2 NA Intergenic Intergenic 76384 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 202-122 chr2 99506213 99506374 + 2 NA Intergenic Intergenic -16276 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 564-98 chr2 50613090 50613468 + 2 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 82983 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 325-347 chr3 62384815 62385078 + 2 NA Intergenic Intergenic -11396 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 313-404 chr4 129302331 129302542 + 2 NA Intergenic L1MA2|LINE|L1 206284 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 353-287 chr20 42903477 42903772 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -65119 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 261-79 chr12 67106725 67106909 + 2 NA Intergenic L1M2|LINE|L1 -10533 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 370-144 chr14 64565327 64565670 + 2 NA intron (NM_172365, intron 5 of 11) (ATAC)n|Simple_repeat|Simple_repeat 15537 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 416-140 chr17 52011785 52012096 + 2 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 146774 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 359-405 chr5 103796815 103797004 + 2 NA Intergenic AluSz|SINE|Alu -234120 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 431-10 chr1 64021847 64022199 + 2 NA intron (NM_005012, intron 2 of 8) L1MB5|LINE|L1 90182 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 370-41 chr10 39269169 39269504 + 2 NA Intergenic ALR/Alpha|Satellite|centr 572740 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 297-364 chr5 30195324 30195554 + 2 NA Intergenic Intergenic 314879 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 552-52 chr13 93141771 93142172 + 2 NA Intergenic L1M5|LINE|L1 -84836 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 650-28 chr14 53395823 53396433 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 242774 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 265-166 chr2 5771206 5771463 + 2 NA Intergenic Tigger12c|DNA|TcMar-Tigger 41262 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 283 chr1 2958528 2958736 + 2 NA Intergenic L1MEg|LINE|L1 -62835 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 288-373 chr6 69260992 69261270 + 2 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 535335 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 321-129 chr12 37283929 37284177 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1032721 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 275-48 chr10 70036632 70036826 + 2 NA Intergenic Intergenic -16117 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 286-262 chr21 37305495 37305774 + 2 NA Intergenic AluJb|SINE|Alu -37526 NM_001331022 10311 Hs.369488 NM_006052 ENSG00000157538 VPS26C DCRA|DSCR3|DSCRA VPS26 endosomal protein sorting factor C protein-coding 231-342 chr7 118286347 118286517 + 2 NA Intergenic Intergenic 61728 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 541-82 chr16 74162325 74162842 + 2 NA Intergenic HAL1|LINE|L1 52938 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 219-65 chr12 14381498 14381666 + 2 NA intron (NM_001286515, intron 1 of 12) HAL1|LINE|L1 -3699 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 558-152 chr4 64230530 64230847 + 2 NA Intergenic LTR25-int|LTR|ERV1 178762 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 265-290 chr5 4284730 4284955 + 2 NA Intergenic Intergenic -488639 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 306-51 chr10 29989158 29989362 + 2 NA Intergenic Intergenic 70326 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 255-183 chr2 7264568 7264718 + 2 NA Intergenic Intergenic -156618 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 308-46 chr10 10726854 10727061 + 2 NA intron (NM_001326317, intron 2 of 14) MSTA|LTR|ERVL-MaLR 67957 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 337-464 chr5 140768343 140768575 + 2 NA Intergenic L1M4|LINE|L1 -17677 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 384-157 chr2 12692038 12692351 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -24678 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 304-128 chr13 85042597 85042811 + 2 NA Intergenic L1MA4|LINE|L1 105353 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 279-419 chr8 107742538 107742802 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -244752 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 191-76 chr17 53409706 53409826 + 2 NA Intergenic Intergenic -413161 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 229-379 chr8 35844366 35844524 + 2 NA Intergenic L1MA8|LINE|L1 -134125 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 289-463 chr8 62593465 62593693 + 2 NA intron (NM_001304533, intron 3 of 6) L1MEc|LINE|L1 344725 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 232-161 chr2 26851042 26851176 + 2 NA intron (NM_001253724, intron 1 of 12) intron (NM_001253724, intron 1 of 12) 2685 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 674-53 chr21 27670822 27671229 + 2 NA Intergenic Intergenic -51354 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 499-204 chr5 43478045 43478451 + 2 NA intron (NM_022483, intron 1 of 2) intron (NM_022483, intron 1 of 2) 5617 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 285-391 chr7 83433085 83433368 + 2 NA intron (NM_001178129, intron 4 of 16) MIR|SINE|MIR 208205 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 235-6 chr1 55485378 55485582 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 259839 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 170-13 chr1 222065684 222065841 + 2 NA Intergenic Intergenic -87242 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 211-169 chr20 61033856 61034033 + 2 NA Intergenic L1MCa|LINE|L1 -45120 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 445-71 chr14 71657646 71657985 + 2 NA intron (NM_001354286, intron 9 of 24) Charlie4a|DNA|hAT-Charlie 71517 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 295-322 chr4 28175218 28175439 + 2 NA Intergenic Intergenic -644254 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 287-145 chr15 27273311 27273468 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -112070 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 497-221 chr5 26775774 26776197 + 2 NA Intergenic Intergenic 262601 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 296-238 chr2 115789272 115789430 + 2 NA intron (NM_001321912, intron 18 of 25) L1MEc|LINE|L1 445536 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 342-203 chr18 30708051 30708307 + 2 NA Intergenic Intergenic 334563 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 381-381 chr8 79295305 79295562 + 2 NA Intergenic L1MA1|LINE|L1 -36755 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 304-439 chr5 150929812 150929973 + 2 NA TTS (NR_026867) TTS (NR_026867) 16692 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 245-202 chr2 133708122 133708317 + 2 NA Intergenic Intergenic -139756 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 225-262 chr5 7050473 7050625 + 2 NA Intergenic L1MA7|LINE|L1 218805 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 253-35 chr1 234638843 234639088 + 2 NA Intergenic Intergenic -7324 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 438-272 chr8 82468926 82469279 + 2 NA Intergenic Intergenic -443002 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 215-341 chr9 81047483 81047641 + 2 NA Intergenic Intergenic 641973 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 382-324 chr5 45845665 45845887 + 2 NA Intergenic Intergenic -149396 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 303-327 chr4 100241657 100241863 + 2 NA Intergenic MER72|LTR|ERV1 -51292 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 373-245 chr21 29689408 29689742 + 2 NA intron (NM_001320621, intron 1 of 13) intron (NM_001320621, intron 1 of 13) -58600 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 194-44 chr12 96075562 96075749 + 2 NA Intergenic L1MA8|LINE|L1 -32135 NM_001256643 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 270-239 chr3 94674592 94674790 + 2 NA Intergenic Intergenic -263572 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 305-237 chr2 20722418 20722617 + 2 NA intron (NR_104233, intron 3 of 4) L1MA4|LINE|L1 55373 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 520-242 chr5 115793883 115794253 + 2 NA Intergenic Intergenic 22589 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 404-84 chr12 127585658 127585989 + 2 NA Intergenic AluY|SINE|Alu 50644 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 351-10 chr1 92005850 92006131 + 2 NA intron (NM_001726, intron 18 of 18) L1MEc|LINE|L1 -23995 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 499-8 chr1 84639533 84639959 + 2 NA Intergenic AluSg|SINE|Alu -4726 NR_027379 439927 Hs.407054 NM_001033660 ENSG00000180869 LINC01555 C1orf180 long intergenic non-protein coding RNA 1555 ncRNA 221-179 chr3 28214670 28214830 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -26869 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 334-278 chr2 114081463 114081685 + 2 NA Intergenic Intergenic -101590 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 326-519 chr8 52209327 52209632 + 2 NA intron (NM_001352863, intron 9 of 27) MIR|SINE|MIR 15117 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 384-68 chr12 9154939 9155169 + 2 NA intron (NM_002864, intron 28 of 35) intron (NM_002864, intron 28 of 35) -38825 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 234-132 chr17 47845702 47845879 + 2 NA 3' UTR (NM_001258248, exon 2 of 2) 3' UTR (NM_001258248, exon 2 of 2) -4517 NM_001145023 90507 Hs.239718 NM_138355 ENSG00000141295 SCRN2 Ses2 secernin 2 protein-coding 253-378 chr7 26456112 26456267 + 2 NA intron (NR_148500, intron 2 of 5) MIR|SINE|MIR -56771 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 265-351 chr7 1774806 1774993 + 2 NA Intergenic AluSg|SINE|Alu -32589 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 448-250 chr7 8624794 8625140 + 2 NA intron (NM_152745, intron 2 of 2) MIR3|SINE|MIR 191358 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 461-218 chr5 100325618 100325938 + 2 NA Intergenic Intergenic 62476 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 477-289 chr8 121492104 121492455 + 2 NA Intergenic Intergenic -147067 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 261-260 chr3 156309171 156309303 + 2 NA intron (NM_172159, intron 1 of 13) intron (NM_172159, intron 1 of 13) 18200 NM_001308222 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 545-209 chr6 138445471 138445883 + 2 NA intron (NM_001144060, intron 4 of 7) intron (NM_001144060, intron 4 of 7) -10383 NR_036099 100423001 NR_036099 ENSG00000266555 MIR3145 mir-3145 microRNA 3145 ncRNA 361-71 chr11 32646493 32646772 + 2 NA intron (NM_001008391, intron 12 of 17) HAL1|LINE|L1 62801 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 285-412 chr8 82540737 82540921 + 2 NA Intergenic Intergenic -371275 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 344-223 chr2 12889437 12889711 + 2 NA Intergenic Intergenic 117439 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 283-360 chr5 57115444 57115673 + 2 NA Intergenic Intergenic -58390 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 285-90 chr12 52499443 52499639 + 2 NA Intergenic FRAM|SINE|Alu -6284 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 510-232 chr5 105068119 105068489 + 2 NA Intergenic L2a|LINE|L2 -31170 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 343-485 chr6 132345094 132345357 + 2 NA intron (NM_015529, intron 4 of 11) L1M5|LINE|L1 56250 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 515-12 chr1 184289500 184289973 + 2 NA Intergenic MLT2A1|LTR|ERVL -97293 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 390-99 chr14 61982005 61982215 + 2 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 54415 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 654-82 chr3 101919136 101919635 + 2 NA Intergenic L1PA7|LINE|L1 -21474 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 300-246 chr20 52284953 52285145 + 2 NA Intergenic Intergenic -93064 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 650-132 chr8 136988668 136989103 + 2 NA Intergenic MER52A|LTR|ERV1 424703 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 271-296 chr4 30989300 30989479 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -181755 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 297-42 chr10 16614306 16614574 + 2 NA intron (NM_152724, intron 7 of 7) L1MA2|LINE|L1 -92561 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 424-10 chr1 152084198 152084562 + 2 NA 3' UTR (NM_001008536, exon 3 of 3) 3' UTR (NM_001008536, exon 3 of 3) -3456 NM_001310142 100131107 NM_001310142 LOC100131107 - putative UPF0607 protein ENSP00000383783 protein-coding 324-132 chr12 133066030 133066207 + 2 NA Intergenic LTR16A|LTR|ERVL -14085 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 192-151 chr4 104289840 104290007 + 2 NA Intergenic Intergenic -201042 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 499-164 chr3 45350321 45350662 + 2 NA Intergenic Intergenic -38085 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 631-10 chr1 174900122 174900623 + 2 NA intron (NM_001366451, intron 5 of 12) MER51B|LTR|ERV1 24854 NM_001035230 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 460-109 chr17 52666938 52667227 + 2 NA Intergenic AluJr|SINE|Alu -195039 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 157-120 chr7 48317476 48317605 + 2 NA intron (NM_152701, intron 27 of 61) intron (NM_152701, intron 27 of 61) 146082 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 386-280 chr5 15140480 15140690 + 2 NA Intergenic L1MA10|LINE|L1 125975 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 285-458 chr9 75547138 75547341 + 2 NA Intergenic Intergenic -343405 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 156-69 chr3 137529748 137529859 + 2 NA Intergenic L2|LINE|L2 -234512 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 642-39 chr16 47803019 47803644 + 2 NA Intergenic Intergenic -55250 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 375-23 chr1 211114183 211114399 + 2 NA intron (NM_002238, intron 1 of 10) LTR81A|LTR|Gypsy 19083 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 306-385 chr5 20391029 20391222 + 2 NA intron (NM_001349558, intron 1 of 15) L1PA4|LINE|L1 85574 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 142-8 chr10 93012532 93012620 + 2 NA intron (NM_001319195, intron 19 of 21) intron (NM_001319195, intron 19 of 21) -48222 NM_183374 340665 Hs.369993 NM_183374 ENSG00000187553 CYP26C1 FFDD4 cytochrome P450 family 26 subfamily C member 1 protein-coding 380-196 chr2 134976413 134976761 + 2 NA intron (NM_001282883, intron 7 of 7) L1MA4A|LINE|L1 47062 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 422-66 chr12 116319106 116319355 + 2 NA Intergenic Intergenic -42044 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 405-194 chr22 36273683 36273968 + 2 NA Intergenic Intergenic 13082 NR_106877 102465491 NR_106877 ENSG00000278420 MIR6819 hsa-mir-6819 microRNA 6819 ncRNA 456-289 chr6 162019876 162020178 + 2 NA intron (NM_013988, intron 2 of 8) AluSq2|SINE|Alu 549050 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 245-80 chr11 84719998 84720203 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 842 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 330-526 chr8 107465151 107465434 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 32626 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 227-16 chr1 118972195 118972365 + 2 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 16063 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 691-15 chr11 110950519 110951106 + 2 NA Intergenic Intergenic 146506 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 295-357 chr4 119157039 119157239 + 2 NA intron (NM_016599, intron 3 of 5) intron (NM_016599, intron 3 of 5) 21355 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 296-407 chr6 80444264 80444463 + 2 NA Intergenic L2b|LINE|L2 337692 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 520-244 chr5 117973401 117973723 + 2 NA intron (NR_104997, intron 2 of 2) MSTA-int|LTR|ERVL-MaLR 243201 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 360-196 chr19 52360870 52361201 + 2 NA intron (NM_001161425, intron 5 of 5) L1M4c|LINE|L1 -8888 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 339-566 chr8 67654735 67654909 + 2 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 91538 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 237-39 chr10 109036631 109036787 + 2 NA Intergenic L1MDa|LINE|L1 886537 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 288-294 chr4 43260502 43260698 + 2 NA Intergenic L1PA8|LINE|L1 231943 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 136-5 chr1 184140042 184140110 + 2 NA Intergenic AluJr|SINE|Alu 88346 NM_001300766 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 576-165 chr8 65398068 65398457 + 2 NA Intergenic L2a|LINE|L2 164404 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 121-52 chr5 63763559 63763627 + 2 NA Intergenic Intergenic 198699 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 354-481 chr8 134246039 134246334 + 2 NA Intergenic Intergenic -351885 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 560-127 chr4 107234194 107234516 + 2 NA Intergenic L1MC5|LINE|L1 -198042 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 385-245 chr3 88573141 88573493 + 2 NA Intergenic Intergenic 234861 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 240-406 chr7 146264913 146265135 + 2 NA Intergenic Intergenic -509247 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 208-120 chr2 80523413 80523586 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 210120 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 231-152 chr2 26032319 26032485 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -1682 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 289-507 chrX 101905326 101905596 + 2 NA intron (NM_001282401, intron 1 of 8) intron (NM_001282401, intron 1 of 8) 26566 NM_001282400 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 569-127 chr3 194983951 194984413 + 2 NA Intergenic Intergenic -110406 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 363-342 chr4 112444769 112445010 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -70490 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 495-148 chr3 3336966 3337312 + 2 NA Intergenic Intergenic -157422 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 263-351 chr6 40034419 40034660 + 2 NA Intergenic Intergenic -100077 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 233-154 chr2 4796084 4796272 + 2 NA Intergenic Intergenic -139956 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 343-364 chr3 158044486 158044673 + 2 NA Intergenic L1PBb|LINE|L1 61584 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 202-75 chr14 73654038 73654230 + 2 NA intron (NM_001201366, intron 2 of 8) Kanga1a|DNA|TcMar-Tc2 9148 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 483-170 chr3 96622251 96622716 + 2 NA Intergenic Intergenic -192111 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 705-9 chr10 67350930 67351492 + 2 NA intron (NM_001127384, intron 5 of 17) L1ME1|LINE|L1 52199 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 284-321 chr5 53917636 53917864 + 2 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) 33849 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 247-211 chr2 123378757 123378930 + 2 NA Intergenic L1MA8|LINE|L1 -305362 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 616-102 chr3 18548017 18548566 + 2 NA Intergenic Intergenic -102699 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 314-257 chr19 52445252 52445552 + 2 NA intron (NM_001291368, intron 4 of 4) AluSz|SINE|Alu -8151 NM_001366182 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 354-421 chr7 10942577 10942863 + 2 NA Intergenic Alu|SINE|Alu -2567 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 299-271 chr22 47182212 47182368 + 2 NA Intergenic L1MA1|LINE|L1 -163281 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 328-164 chr14 88914303 88914488 + 2 NA Intergenic MER70B|LTR|ERVL 89744 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 315-90 chr11 95567692 95567907 + 2 NA Intergenic Intergenic 221983 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 298-22 chr1 196533343 196533609 + 2 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 49005 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 171-50 chr19 49378779 49378930 + 2 NA intron (NR_110729, intron 2 of 2) L1MB8|LINE|L1 9227 NR_110729 101928295 Hs.640180 NR_110729 ENSG00000268686 LOC101928295 - uncharacterized LOC101928295 ncRNA 377-133 chr15 65438904 65439224 + 2 NA Intergenic Intergenic -16117 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 276-340 chr4 72895605 72895748 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 174040 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 383-310 chr5 41091209 41091566 + 2 NA Intergenic L1M3c|LINE|L1 -20045 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 449-194 chr4 97589331 97589612 + 2 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 222545 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 678-73 chr3 190952847 190953381 + 2 NA Intergenic LTR14B|LTR|ERVK 75184 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 316-213 chr17 70583407 70583664 + 2 NA Intergenic Intergenic 414000 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 294-426 chr7 9726412 9726610 + 2 NA Intergenic CpG 92241 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 505-177 chr20 24859016 24859366 + 2 NA Intergenic Intergenic -90078 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 383-309 chr5 35165180 35165506 + 2 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) -47221 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 351-159 chr16 50438932 50439173 + 2 NA Intergenic L1MC1|LINE|L1 -43919 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 118-60 chr8 26990408 26990505 + 2 NA Intergenic Intergenic 58507 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 280-178 chr19 37541844 37541996 + 2 NA 3' UTR (NM_001013659, exon 8 of 8) 3' UTR (NM_001013659, exon 8 of 8) -7029 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 300-48 chr10 80344856 80345131 + 2 NA intron (NM_001270042, intron 1 of 3) Cheshire|DNA|hAT-Charlie 248 NR_070309 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 230-244 chr3 163778662 163778860 + 2 NA Intergenic Intergenic 392795 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 306-519 chr8 117235920 117236077 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 101003 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 187-132 chr4 96983066 96983208 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -383789 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 495-43 chr12 16971375 16971863 + 2 NA Intergenic L1M2|LINE|L1 -17128 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 631-28 chr11 97392849 97393404 + 2 NA Intergenic L1MA2|LINE|L1 884701 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 421-299 chr8 88453754 88454079 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -126433 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 274-221 chr2 136877162 136877388 + 2 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 111730 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 480-237 chr5 80424819 80425153 + 2 NA intron (NR_146172, intron 2 of 20) L1PA5|LINE|L1 16922 NR_146173 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 558-130 chr3 13173500 13173863 + 2 NA Intergenic Intergenic -100252 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 377-46 chr10 60130801 60131137 + 2 NA intron (NM_001204403, intron 26 of 43) L1ME2z|LINE|L1 10047 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 404-151 chr2 6830276 6830526 + 2 NA intron (NR_126359, intron 2 of 3) HAL1|LINE|L1 10063 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 481-199 chr3 87124247 87124636 + 2 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 35161 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 350-438 chr6 54953917 54954132 + 2 NA Intergenic Intergenic 107253 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 246-172 chr18 57002088 57002272 + 2 NA intron (NM_015285, intron 26 of 27) intron (NM_015285, intron 26 of 27) 69939 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 368-118 chr12 115263184 115263406 + 2 NA Intergenic Intergenic -579120 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 384-152 chr19 43812110 43812354 + 2 NA intron (NM_182573, intron 1 of 4) MLT1H2|LTR|ERVL-MaLR 8424 NM_182573 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 343-261 chr2 116442578 116442891 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 1098919 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 322-35 chr1 194805248 194805493 + 2 NA Intergenic Intergenic 1283345 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 374-220 chr20 23577232 23577433 + 2 NA Intergenic L1PB1|LINE|L1 -8848 NM_080610 128821 Hs.121554 NM_080610 ENSG00000101435 CST9L CTES7B|bA218C14.1 cystatin 9 like protein-coding 524-127 chr2 183825611 183826060 + 2 NA Intergenic L1MA2|LINE|L1 -553140 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 549-220 chr9 25078718 25079169 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -533046 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 579-74 chr2 128052708 128053104 + 2 NA Intergenic L1PB1|LINE|L1 -24847 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 289-444 chr7 93096860 93097104 + 2 NA Intergenic Intergenic 20997 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 517-177 chr3 104127510 104127979 + 2 NA Intergenic Intergenic -603628 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 504-250 chr8 25337048 25337385 + 2 NA intron (NM_024940, intron 22 of 51) intron (NM_024940, intron 22 of 51) -8186 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 297-295 chr3 94435872 94436029 + 2 NA Intergenic Intergenic 372889 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 260-197 chr2 14640920 14641135 + 2 NA TTS (NM_145175) TTS (NM_145175) 8310 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 396-43 chr10 29115774 29116096 + 2 NA Intergenic MSTA1|LTR|ERVL-MaLR -173135 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 743-24 chr16 50534216 50534828 + 2 NA Intergenic Intergenic -13874 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 487-11 chr1 79775755 79776088 + 2 NA Intergenic Intergenic -759834 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 627-27 chr14 43604277 43604854 + 2 NA Intergenic L1MCb|LINE|L1 902718 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 359-93 chr11 80854397 80854636 + 2 NA Intergenic Intergenic -91713 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 318-299 chr2 189783328 189783616 + 2 NA promoter-TSS (NM_001321048) promoter-TSS (NM_001321048) 521 NM_001371388 300-394 chr6 86134267 86134543 + 2 NA Intergenic L1M2|LINE|L1 -455672 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 157-93 chr4 99047145 99047251 + 2 NA intron (NM_015143, intron 8 of 10) MER20|DNA|hAT-Charlie 41590 NM_000671 128 Hs.78989 NM_000671 ENSG00000197894 ADH5 ADH-3|ADHX|FALDH|FDH|GSH-FDH|GSNOR|HEL-S-60p alcohol dehydrogenase 5 (class III), chi polypeptide protein-coding 354-385 chr5 156968890 156969149 + 2 NA Intergenic L1MC3|LINE|L1 -5793 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 228-197 chr21 20351287 20351447 + 2 NA Intergenic Intergenic -92682 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 372-154 chr14 87546797 87547001 + 2 NA Intergenic Intergenic 108395 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 399-142 chr2 53045130 53045452 + 2 NA Intergenic L1MA7|LINE|L1 -342676 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 879-32 chr8 138989671 138990321 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -75955 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 315-448 chr7 80009758 80010014 + 2 NA Intergenic L1M2|LINE|L1 -124945 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 252-444 chr8 139554956 139555133 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 148079 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 225-376 chr8 130994502 130994673 + 2 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 46322 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 415-206 chr5 7272208 7272534 + 2 NA Intergenic Intergenic -3017 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 265-73 chr12 26146911 26147105 + 2 NA Intergenic Intergenic -21971 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 263-271 chr3 176465712 176465917 + 2 NA Intergenic L1ME3A|LINE|L1 -49289 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 338-161 chr14 46593413 46593658 + 2 NA Intergenic Intergenic 58246 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 267-364 chr6 35111283 35111486 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 29955 NM_001366323 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 412-311 chr7 80175913 80176163 + 2 NA intron (NM_001256414, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 40254 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 351-356 chr4 126173571 126173915 + 2 NA Intergenic Intergenic 666484 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 363-308 chr3 192336149 192336363 + 2 NA intron (NM_004113, intron 3 of 5) intron (NM_004113, intron 3 of 5) 72793 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 280-457 chrX 100466660 100466827 + 2 NA Intergenic L1PA13|LINE|L1 -56470 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 278-185 chr19 12620452 12620626 + 2 NA intron (NM_153358, intron 1 of 3) intron (NM_153358, intron 1 of 3) 9619 NM_153358 163049 Hs.720677 NM_153358 ENSG00000173875 ZNF791 - zinc finger protein 791 protein-coding 485-219 chr5 35422084 35422392 + 2 NA Intergenic L1MA9|LINE|L1 -191751 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 178-130 chr7 16949668 16949791 + 2 NA Intergenic Intergenic -67746 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 315-40 chr1 247157296 247157551 + 2 NA intron (NM_001297568, intron 3 of 3) intron (NM_001297568, intron 3 of 3) 14594 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 362-219 chr2 98250600 98250834 + 2 NA intron (NM_001345864, intron 14 of 21) L1MA3|LINE|L1 -95438 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 473-263 chr7 88408079 88408398 + 2 NA Intergenic Intergenic -101344 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 557-141 chr3 166116914 166117391 + 2 NA Intergenic Intergenic -279729 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 360-72 chr11 113972009 113972334 + 2 NA Intergenic Intergenic -2904 NR_046363 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 328-437 chr5 23122335 23122594 + 2 NA Intergenic Intergenic -269120 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 194-172 chr5 127965569 127965709 + 2 NA TTS (NR_152798) TTS (NR_152798) 117536 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 352-144 chr14 59043632 59043925 + 2 NA Intergenic L1MEc|LINE|L1 -144889 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 317-141 chr14 47562870 47563171 + 2 NA intron (NM_001113498, intron 1 of 16) L1PA15|LINE|L1 111934 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 364-473 chr9 82011986 82012171 + 2 NA Intergenic Intergenic 23306 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 334-477 chr6 142097552 142097744 + 2 NA intron (NM_001324308, intron 1 of 2) L1MC1|LINE|L1 -8849 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 193-92 chr2 10064360 10064503 + 2 NA intron (NM_001037160, intron 2 of 2) intron (NM_001037160, intron 2 of 2) 15980 NM_001037160 192668 Hs.27092 NM_001037160 ENSG00000205795 CYS1 - cystin 1 protein-coding 785-27 chr2 66345770 66346340 + 2 NA Intergenic LTR16A1|LTR|ERVL 12273 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 592-136 chr5 11651010 11651375 + 2 NA intron (NM_001288717, intron 2 of 20) MSTA-int|LTR|ERVL-MaLR -62126 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 488-158 chr20 40821064 40821538 + 2 NA Intergenic Intergenic -106678 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 364-180 chr18 5216806 5217049 + 2 NA Intergenic AluY|SINE|Alu -19175 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 251-290 chr5 26604576 26604804 + 2 NA Intergenic Intergenic 433896 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 223-131 chr19 8849763 8849939 + 2 NA intron (NM_024690, intron 83 of 83) L1ME1|LINE|L1 7258 NM_145208 85509 Hs.133912 NM_145208 ENSG00000170948 MBD3L1 MBD3L methyl-CpG binding domain protein 3 like 1 protein-coding 621-63 chr2 187158362 187158802 + 2 NA Intergenic Intergenic 289670 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 303-56 chr10 97504560 97504840 + 2 NA intron (NM_024954, intron 1 of 2) L2a|LINE|L2 5776 NM_024954 80019 Hs.500724 NM_024954 ENSG00000165886 UBTD1 - ubiquitin domain containing 1 protein-coding 358-341 chr4 99439276 99439606 + 2 NA Intergenic Intergenic -3931 NM_000673 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 311-432 chr6 37707092 37707292 + 2 NA Intergenic Intergenic -9309 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 515-251 chr7 69465324 69465778 + 2 NA Intergenic MER21B|LTR|ERVL 132073 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 358-340 chr4 99334362 99334580 + 2 NA Intergenic Intergenic -13070 NM_001286650 125 Hs.4 NM_000668 ENSG00000196616 ADH1B ADH2|HEL-S-117 alcohol dehydrogenase 1B (class I), beta polypeptide protein-coding 271-390 chr6 133012796 133013059 + 2 NA Intergenic Intergenic -75153 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 544-134 chr2 221686743 221687188 + 2 NA Intergenic L1MC5a|LINE|L1 -112763 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 331-266 chr2 72220440 72220740 + 2 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -72728 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 191-5 chr1 74728055 74728171 + 2 NA intron (NM_001889, intron 1 of 8) L1ME3Cz|LINE|L1 4937 NM_001889 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 182-183 chrX 87429105 87429259 + 2 NA Intergenic Intergenic -88620 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 528-170 chr3 181103930 181104370 + 2 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) 47470 NR_075092 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 268-337 chr6 53740290 53740489 + 2 NA Intergenic L1ME3A|LINE|L1 -54616 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 231-78 chr13 30953596 30953760 + 2 NA intron (NM_152325, intron 3 of 6) L2a|LINE|L2 21022 NM_001353388 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 470-261 chr8 31679227 31679627 + 2 NA intron (NM_013962, intron 1 of 4) L2a|LINE|L2 39675 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 158-67 chr20 7096916 7097051 + 2 NA Intergenic L1MA1|LINE|L1 157219 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 370-301 chr3 16141070 16141420 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -33435 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 387-91 chr12 128202202 128202456 + 2 NA Intergenic L1MDa|LINE|L1 -65074 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 389-53 chr11 7773907 7774228 + 2 NA Intergenic Intergenic 22875 NM_153444 120065 Hs.351824 NM_153444 ENSG00000183303 OR5P2 JCG3|JCG4 olfactory receptor family 5 subfamily P member 2 protein-coding 517-103 chr17 65471298 65471659 + 2 NA Intergenic Intergenic 13937 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 361-5 chr1 56893592 56893918 + 2 NA intron (NM_000562, intron 7 of 10) MIRb|SINE|MIR 38985 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 255-360 chr6 92530363 92530512 + 2 NA Intergenic AluYk4|SINE|Alu -840009 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 441-266 chr8 106035485 106035898 + 2 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 24812 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 357-309 chr4 57330169 57330410 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -95583 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 168-34 chr14 72159577 72159735 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 226129 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 282-445 chr8 78041041 78041263 + 2 NA Intergenic MIRc|SINE|MIR -475188 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 417-174 chr3 44088972 44089209 + 2 NA Intergenic L1MD2|LINE|L1 -25122 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 191-142 chr3 162275140 162275328 + 2 NA Intergenic L1PA16|LINE|L1 778426 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 636-49 chr14 89561189 89561723 + 2 NA intron (NM_001085471, intron 1 of 6) AluSq2|SINE|Alu -14760 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 353-305 chr22 35255786 35255967 + 2 NA Intergenic Intergenic -1617 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 401-131 chr17 78508717 78508958 + 2 NA intron (NM_173628, intron 27 of 80) AluJo|SINE|Alu 23927 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 456-119 chr16 20502939 20503209 + 2 NA Intergenic L1MEf|LINE|L1 51553 NM_001308172 123876 Hs.298252 NM_001010845 ENSG00000183747 ACSM2A A-923A4.1|ACSM2 acyl-CoA synthetase medium chain family member 2A protein-coding 678-19 chr12 44486526 44487077 + 2 NA Intergenic Intergenic 388860 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 371-196 chr2 181256675 181257031 + 2 NA intron (NR_130784, intron 2 of 4) MIRc|SINE|MIR 48799 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 521-158 chr3 26724174 26724558 + 2 NA Intergenic Intergenic 29809 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 261-76 chr12 23928120 23928334 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) 21443 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 395-37 chr10 41825951 41826192 + 2 NA Intergenic ALR/Alpha|Satellite|centr 541974 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 334-172 chr15 54576907 54577160 + 2 NA intron (NM_001329919, intron 29 of 31) intron (NM_001329919, intron 29 of 31) -479714 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 396-372 chr9 36812078 36812305 + 2 NA Intergenic Intergenic 11408 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 547-142 chr3 107126915 107127232 + 2 NA intron (NR_028303, intron 2 of 3) MLT2B1|LTR|ERVL 113565 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 229-22 chr1 218110438 218110592 + 2 NA Intergenic Intergenic 67010 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 325-81 chr10 105032555 105032738 + 2 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -366430 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 259-320 chr5 90048108 90048326 + 2 NA Intergenic Intergenic -31497 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 432-208 chr4 130661765 130662140 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 285591 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 268-372 chr7 54104224 54104444 + 2 NA Intergenic Intergenic -226363 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 218-345 chr9 25151585 25151777 + 2 NA Intergenic HAL1M8|LINE|L1 527177 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 254-288 chr4 163897281 163897481 + 2 NA intron (NM_001166373, intron 2 of 7) L2a|LINE|L2 -283847 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 354-177 chr17 82747187 82747437 + 2 NA intron (NM_022158, intron 4 of 5) L1ME1|LINE|L1 -4753 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 429-26 chr1 217169333 217169644 + 2 NA Intergenic L2c|LINE|L2 -31786 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 429-273 chr7 49513455 49513873 + 2 NA Intergenic MIRb|SINE|MIR -259974 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 335-55 chr10 57777352 57777616 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -472925 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 355-416 chr5 126097369 126097637 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -82074 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 337-449 chr5 55051333 55051574 + 2 NA Intergenic Intergenic 27197 NM_002104 3003 Hs.277937 NM_002104 ENSG00000113088 GZMK TRYP2 granzyme K protein-coding 252-449 chr9 93746375 93746552 + 2 NA Intergenic L1PB3|LINE|L1 -72894 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 222-162 chr2 16119757 16119890 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 69396 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 326-209 chr18 29391995 29392289 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -906768 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 223-229 chr3 174446407 174446550 + 2 NA Intergenic Intergenic -412856 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 270-395 chr8 108387987 108388250 + 2 NA Intergenic Intergenic -55465 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 448-161 chr3 69887403 69887740 + 2 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) 21347 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 625-23 chr12 28590662 28591159 + 2 NA Intergenic Intergenic -400172 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 218-227 chr3 150362479 150362651 + 2 NA Intergenic L2b|LINE|L2 -38818 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 638-9 chr1 233665536 233666002 + 2 NA intron (NM_002245, intron 1 of 2) LTR62|LTR|ERVL 41617 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 248-295 chr4 163852939 163853146 + 2 NA intron (NM_001166373, intron 3 of 7) MLT1A0|LTR|ERVL-MaLR -239508 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 157-119 chr7 27924570 27924691 + 2 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 184535 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 325-556 chr8 131621125 131621445 + 2 NA Intergenic L1MC3|LINE|L1 -282808 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 291-227 chr2 114041277 114041480 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -61394 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 504-60 chr13 82590962 82591409 + 2 NA Intergenic L1M5|LINE|L1 1291208 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 368-191 chr17 54878712 54879063 + 2 NA Intergenic L2a|LINE|L2 -21804 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 324-534 chr8 91766084 91766313 + 2 NA Intergenic Intergenic 251482 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 366-351 chr5 120456168 120456455 + 2 NA Intergenic MIRc|SINE|MIR -7967 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 152-35 chr17 35695588 35695699 + 2 NA intron (NM_001030006, intron 18 of 21) intron (NM_001030006, intron 18 of 21) -35996 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 246-63 chr11 22058039 22058196 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -134968 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 658-39 chr13 92994941 92995317 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -50212 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 698-96 chrX 116060543 116060963 + 2 NA Intergenic L1M1|LINE|L1 -91642 NR_130730 642776 Hs.634316 NR_130730 ENSG00000235244 DANT2 - DXZ4 associated non-coding transcript 2, distal ncRNA 328-318 chr20 47418006 47418230 + 2 NA Intergenic Intergenic -5974 NR_146496 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 134-88 chr8 111885487 111885555 + 2 NA Intergenic Intergenic 508882 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 366-78 chr11 61174580 61174770 + 2 NA Intergenic Intergenic -13249 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 329-395 chr4 12619536 12619715 + 2 NA Intergenic Intergenic 396174 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 698-81 chr7 92789163 92789691 + 2 NA intron (NM_001259, intron 2 of 7) L1M4|LINE|L1 44532 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 142-88 chrX 98755225 98755329 + 2 NA Intergenic Intergenic -1190742 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 491-168 chr3 80935389 80935714 + 2 NA Intergenic MIR|SINE|MIR -58317 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 562-119 chr2 174935399 174935753 + 2 NA intron (NM_001025201, intron 4 of 12) intron (NM_001025201, intron 4 of 12) 69677 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 310-154 chr15 35831522 35831731 + 2 NA intron (NR_038251, intron 2 of 2) L3b|LINE|CR1 -95230 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 294-433 chr7 32099323 32099475 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -27963 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 344-346 chr4 31199157 31199398 + 2 NA intron (NR_125935, intron 4 of 4) THE1A-int|LTR|ERVL-MaLR 28133 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 561-22 chr10 44121786 44122305 + 2 NA Intergenic Intergenic -170705 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 396-314 chr6 68901783 68902094 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 266656 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 218-347 chr9 72982146 72982319 + 2 NA Intergenic Intergenic -29179 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 372-334 chr3 115060424 115060752 + 2 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 10826 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 480-101 chr16 48197796 48198150 + 2 NA exon (NM_032583, exon 18 of 31) exon (NM_032583, exon 18 of 31) 34298 NM_033151 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 233-320 chr5 173507929 173508101 + 2 NA Intergenic L1ME3A|LINE|L1 -71619 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 290-445 chr8 77304987 77305255 + 2 NA Intergenic Intergenic -145576 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 456-336 chr9 27760760 27761164 + 2 NA Intergenic Intergenic -187096 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 206-89 chr16 59820609 59820763 + 2 NA Intergenic L1MA8|LINE|L1 -34667 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 433-204 chr4 64427270 64427617 + 2 NA Intergenic AluJb|SINE|Alu -17983 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 296-426 chr6 165207283 165207469 + 2 NA Intergenic Intergenic 102229 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 203-169 chr4 106000704 106000871 + 2 NA Intergenic MIRb|SINE|MIR 21691 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 237-51 chr11 33537747 33537883 + 2 NA intron (NM_012194, intron 1 of 20) Charlie16a|DNA|hAT-Charlie 161707 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 114-66 chr9 7825813 7825875 + 2 NA Intergenic Intergenic -26066 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 521-223 chr6 135572844 135573196 + 2 NA intron (NR_152845, intron 2 of 4) (TA)n|Simple_repeat|Simple_repeat 75219 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 306-226 chr2 29732850 29733063 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 188630 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 337-561 chr8 129435877 129436177 + 2 NA intron (NR_130920, intron 1 of 3) MLT1D-int|LTR|ERVL-MaLR 48115 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 322-342 chr3 112210270 112210451 + 2 NA intron (NM_001320531, intron 14 of 27).2 L1MB5|LINE|L1 76937 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 333-602 chr9 33905252 33905541 + 2 NA intron (NM_017811, intron 3 of 4) intron (NM_017811, intron 3 of 4) 28968 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 337-546 chr8 109165666 109165834 + 2 NA Intergenic L2a|LINE|L2 79122 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 404-115 chr15 71759099 71759319 + 2 NA intron (NM_001286429, intron 9 of 11) intron (NM_001286429, intron 9 of 11) -51345 NM_014249 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 211-170 chr21 14829931 14830138 + 2 NA intron (NR_146322, intron 2 of 3) intron (NR_146322, intron 2 of 3) 88634 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 464-121 chr2 72094080 72094510 + 2 NA Intergenic Intergenic 53567 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 417-258 chr7 18952055 18952455 + 2 NA intron (NM_058176, intron 22 of 22) intron (NM_058176, intron 22 of 22) 165381 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 185-97 chr2 85536562 85536663 + 2 NA TTS (NR_038942) TTS (NR_038942) 2274 NR_038942 100630918 Hs.66049 NR_038942 PARTICL PARTICLE promoter of MAT2A antisense radiation-induced circulating long non-coding RNA ncRNA 206-90 chr16 69490243 69490367 + 2 NA Intergenic Intergenic 65710 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 318-221 chr18 52066907 52067105 + 2 NA Intergenic L1MD1|LINE|L1 -273191 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 283-387 chr5 178709935 178710163 + 2 NA Intergenic Intergenic 20610 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 310-300 chr21 15408455 15408722 + 2 NA Intergenic Intergenic -321346 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 346-481 chr8 60098584 60098910 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 182653 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 162-138 chr8 129714970 129715060 + 2 NA Intergenic L1MEf|LINE|L1 -34776 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 235-315 chr7 9765512 9765690 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 131331 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 289-168 chr16 61637152 61637369 + 2 NA Intergenic L2c|LINE|L2 399178 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 251-245 chr3 117965181 117965381 + 2 NA Intergenic Intergenic -274356 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 188-84 chr18 71922627 71922808 + 2 NA Intergenic L1PA14|LINE|L1 -140491 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 341-185 chr16 50935779 50936092 + 2 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 57162 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 339-194 chr16 49017220 49017446 + 2 NA Intergenic Intergenic 264505 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 404-86 chr13 39633809 39634065 + 2 NA Intergenic Intergenic -21690 NR_026745 57511 Hs.507805 NM_020751 ENSG00000133103 COG6 CDG2L|COD2|SHNS component of oligomeric golgi complex 6 protein-coding 221-150 chr2 128837414 128837553 + 2 NA Intergenic Intergenic -27117 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 696-95 chr7 21064912 21065379 + 2 NA Intergenic Intergenic 229714 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 392-252 chr5 66341530 66341749 + 2 NA Intergenic LTR32|LTR|ERVL -132193 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 277-136 chr16 51444565 51444760 + 2 NA Intergenic Intergenic -293390 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 326-556 chr8 132130221 132130525 + 2 NA intron (NM_001204824, intron 14 of 14) AluSg7|SINE|Alu -25108 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 385-3 chr1 78772501 78772801 + 2 NA Intergenic Intergenic 122820 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 171-61 chr2 151620212 151620328 + 2 NA intron (NM_001271208, intron 72 of 182) L1MB2|LINE|L1 114206 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 210-267 chr7 43710405 43710575 + 2 NA intron (NR_163914, intron 1 of 8) L2|LINE|L2 19033 NR_135583 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 312-257 chr2 124516063 124516260 + 2 NA intron (NM_130773, intron 8 of 23) intron (NM_130773, intron 8 of 23) 490874 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 218-251 chr4 121004598 121004797 + 2 NA Intergenic (TTTATT)n|Simple_repeat|Simple_repeat 67838 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 350-197 chr18 74986925 74987138 + 2 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 218482 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 317-54 chr10 66234876 66235073 + 2 NA intron (NM_001127384, intron 13 of 17) MLT1F2|LTR|ERVL-MaLR 663549 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 634-135 chr6 71448019 71448583 + 2 NA intron (NR_121615, intron 4 of 7) L1ME3A|LINE|L1 27274 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 142-3 chr1 103040981 103041120 + 2 NA intron (NM_001854, intron 4 of 66) intron (NM_001854, intron 4 of 66) 67446 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 573-211 chr9 89545933 89546343 + 2 NA Intergenic AluJr|SINE|Alu -48165 NM_001371194 280-108 chr13 53687840 53688001 + 2 NA Intergenic LTR16|LTR|ERVL -127499 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 203-123 chr2 142444684 142444860 + 2 NA Intergenic Intergenic -313071 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 345-198 chr16 86454572 86454780 + 2 NA Intergenic Intergenic 54184 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 429-318 chr8 141884681 141884954 + 2 NA Intergenic Intergenic -98504 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 421-321 chr9 103209053 103209317 + 2 NA intron (NR_121578, intron 7 of 9) MSTA|LTR|ERVL-MaLR 115848 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 122-21 chr16 78122916 78122989 + 2 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 23298 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 575-196 chr8 100075669 100076049 + 2 NA intron (NM_015668, intron 4 of 27) L1MEc|LINE|L1 29767 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 522-253 chr8 109117070 109117463 + 2 NA intron (NM_003301, intron 2 of 2) MIRb|SINE|MIR 30638 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 604-16 chr10 56746667 56747056 + 2 NA Intergenic L2|LINE|L2 -385588 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 235-141 chr17 73441503 73441665 + 2 NA intron (NM_001144952, intron 5 of 44) MLT1C|LTR|ERVL-MaLR -72099 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 448-228 chr5 165206781 165207080 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 736651 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 343-508 chr7 53549404 53549701 + 2 NA Intergenic L1M5|LINE|L1 262379 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 384-154 chr19 57469567 57469902 + 2 NA 3' UTR (NM_001330613, exon 3 of 3) 3' UTR (NM_001330613, exon 3 of 3) 7832 NM_001330613 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 333-203 chr18 8998066 8998313 + 2 NA Intergenic Intergenic -104510 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 324-259 chr2 57408916 57409162 + 2 NA Intergenic L1MA2|LINE|L1 -498612 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 401-310 chr8 20524705 20525033 + 2 NA Intergenic Intergenic 90057 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 236-230 chr3 94955005 94955196 + 2 NA intron (NR_015400, intron 1 of 7) LTR80A|LTR|ERVL 16837 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 289-22 chr1 165873977 165874188 + 2 NA intron (NM_012474, intron 1 of 6) L2|LINE|L2 -33839 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 326-343 chr3 94592547 94592820 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -345580 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 253-187 chr2 66708610 66708760 + 2 NA Intergenic Intergenic -5458 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 207-136 chr2 59166138 59166286 + 2 NA Intergenic Intergenic -51496 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 445-207 chr4 117993767 117994066 + 2 NA Intergenic Intergenic -39406 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 235-233 chr3 89187720 89187875 + 2 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 80176 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 371-227 chr21 14954782 14955098 + 2 NA Intergenic Intergenic -36272 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 646-59 chr2 58825436 58825914 + 2 NA intron (NR_033873, intron 2 of 13) L1M1|LINE|L1 304922 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 343-585 chr9 104428983 104429297 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -75123 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 306-145 chr14 59921532 59921802 + 2 NA intron (NR_075071, intron 1 of 32) L2c|LINE|L2 1954 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 673-10 chr1 218139881 218140550 + 2 NA Intergenic L1M4a2|LINE|L1 96710 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 298-345 chr4 166011262 166011415 + 2 NA intron (NM_001204760, intron 7 of 9) L1MB2|LINE|L1 138101 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 604-82 chr2 80510041 80510472 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 196877 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 319-127 chr13 59077119 59077427 + 2 NA Intergenic AluJr|SINE|Alu -844156 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 210-287 chr8 87309035 87309191 + 2 NA intron (NM_173538, intron 8 of 10) L1MA4|LINE|L1 442698 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 268-431 chr9 26195960 26196128 + 2 NA Intergenic L3b|LINE|CR1 129369 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 152-57 chr20 40372992 40373093 + 2 NA Intergenic Intergenic 316194 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 516-193 chr4 71115320 71115713 + 2 NA Intergenic Intergenic -71743 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 326-270 chr2 160684653 160684926 + 2 NA Intergenic Intergenic -190982 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 466-84 chr15 53915427 53915771 + 2 NA Intergenic Intergenic -62842 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 622-81 chr21 30104185 30104579 + 2 NA Intergenic Intergenic 62423 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 455-104 chr18 53024492 53024832 + 2 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -212439 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 239-359 chr6 107187864 107188059 + 2 NA intron (NM_020381, intron 7 of 7) L2a|LINE|L2 -72446 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 349-174 chr15 23999197 23999451 + 2 NA intron (NR_126392, intron 3 of 5) intron (NR_126392, intron 3 of 5) 24177 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 338-244 chr2 17121707 17121991 + 2 NA Intergenic Intergenic 396591 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 299-480 chr9 22248949 22249127 + 2 NA Intergenic L1PA16|LINE|L1 -197786 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 378-320 chr4 126449615 126449889 + 2 NA Intergenic Intergenic 942493 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 390-163 chr19 31809591 31809857 + 2 NA Intergenic Intergenic -216138 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 542-189 chr6 55021371 55021736 + 2 NA Intergenic AluSp|SINE|Alu -84907 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 306-440 chr6 86582248 86582488 + 2 NA Intergenic L1PB1|LINE|L1 -355160 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 518-136 chr2 101934447 101934824 + 2 NA Intergenic L1M4|LINE|L1 -48830 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 150-60 chr21 23594777 23594888 + 2 NA Intergenic L1MC1|LINE|L1 -209997 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 326-242 chr2 59428906 59429167 + 2 NA Intergenic Intergenic 211328 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 288-281 chr3 171249614 171249844 + 2 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) -142970 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 241-300 chr5 50916001 50916163 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 54105 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 229-335 chr6 62581651 62581814 + 2 NA Intergenic Intergenic -295505 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 208-18 chr10 18064466 18064641 + 2 NA Intergenic L1MC1|LINE|L1 -53991 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 367-305 chr3 190280198 190280558 + 2 NA Intergenic Intergenic 42068 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 267-111 chr14 68623241 68623493 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 5420 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 634-16 chr10 77952571 77952975 + 2 NA Intergenic HAL1|LINE|L1 25961 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 221-216 chr4 59942706 59942834 + 2 NA Intergenic Intergenic 929197 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 266-375 chr6 133195872 133196061 + 2 NA Intergenic Intergenic -45391 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 376-193 chr2 122430632 122430860 + 2 NA Intergenic Intergenic 642735 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 416-63 chr10 133689271 133689505 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -62593 NM_001080998 441581 Hs.690471 NM_001080998 ENSG00000225899 FRG2B - FSHD region gene 2 family member B protein-coding 252-343 chr5 106263461 106263694 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 747437 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 341-276 chr2 184883188 184883440 + 2 NA intron (NM_194250, intron 2 of 3) L1PA15|LINE|L1 283758 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 458-30 chr10 109191664 109192034 + 2 NA Intergenic Intergenic 731397 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 326-462 chr6 104042003 104042189 + 2 NA Intergenic L1PA16|LINE|L1 817450 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 424-235 chr5 174412428 174412717 + 2 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 76218 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 346-172 chr16 8280531 8280853 + 2 NA Intergenic MIR|SINE|MIR 309146 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 533-160 chr4 73700152 73700522 + 2 NA Intergenic Intergenic -40232 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 401-203 chr3 46763783 46764136 + 2 NA Intergenic L1M4|LINE|L1 -7104 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 350-172 chr17 16614801 16615131 + 2 NA Intergenic L1MB3|LINE|L1 38884 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 219-67 chr12 17917246 17917392 + 2 NA Intergenic L1ME1|LINE|L1 172874 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 576-135 chr5 46019574 46020000 + 2 NA Intergenic ALR/Alpha|Satellite|centr -323407 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 503-164 chr2 221678260 221678705 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -104280 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 345-74 chr10 107446193 107446432 + 2 NA Intergenic MIR3|SINE|MIR -281606 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 257-15 chr1 107613964 107614204 + 2 NA intron (NM_006113, intron 21 of 26) intron (NM_006113, intron 21 of 26) 74415 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 403-218 chr4 54708529 54708858 + 2 NA intron (NM_000222, intron 6 of 20) intron (NM_000222, intron 6 of 20) 50765 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 208-198 chr4 178452520 178452705 + 2 NA Intergenic Intergenic -544676 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 214-361 chrX 84776803 84776979 + 2 NA Intergenic Intergenic -157260 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 233-129 chr17 59731316 59731506 + 2 NA intron (NM_001329394, intron 1 of 11) intron (NM_001329394, intron 1 of 11) 23757 NM_001329400 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 546-253 chr9 28780919 28781458 + 2 NA intron (NM_001354574, intron 2 of 5) MIR3|SINE|MIR -61883 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 496-184 chr3 118676011 118676411 + 2 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 34443 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 574-153 chr6 69851524 69851957 + 2 NA Intergenic L1MEg|LINE|L1 -14816 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 316-574 chr9 5673040 5673230 + 2 NA intron (NM_001206557, intron 2 of 24) intron (NM_001206557, intron 2 of 24) 44016 NM_001206557 57589 Hs.211520 NM_020829 ENSG00000107036 RIC1 CIP150|KIAA1432|bA207C16.1 RIC1 homolog, RAB6A GEF complex partner 1 protein-coding 451-190 chr5 169545572 169545942 + 2 NA Intergenic Intergenic -38016 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 284-69 chr11 36862635 36862859 + 2 NA Intergenic L2|LINE|L2 -264468 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 412-43 chr10 124305174 124305424 + 2 NA Intergenic L2b|LINE|L2 113624 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 295-295 chr3 65685529 65685778 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -208163 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 238-290 chr5 26727154 26727341 + 2 NA Intergenic Intergenic 311339 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 238-78 chr11 127491750 127491930 + 2 NA Intergenic LOR1b|LTR|ERV1 220770 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 550-243 chr9 31546942 31547320 + 2 NA Intergenic Intergenic -165641 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 250-340 chr5 54714071 54714277 + 2 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) -10850 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 347-19 chr1 116220023 116220289 + 2 NA Intergenic LTR65|LTR|ERV1 108401 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 256-284 chr4 29854965 29855130 + 2 NA Intergenic MIR3|SINE|MIR 640755 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 283-59 chr10 77115484 77115720 + 2 NA intron (NM_001271519, intron 6 of 28) intron (NM_001271519, intron 6 of 28) -25229 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 206-97 chr18 21742796 21742972 + 2 NA intron (NM_020774, intron 1 of 20) intron (NM_020774, intron 1 of 20) 1555 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 465-153 chr20 16992073 16992422 + 2 NA Intergenic L1MA8|LINE|L1 -233860 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 283-450 chr8 138750377 138750532 + 2 NA intron (NM_152888, intron 22 of 64) intron (NM_152888, intron 22 of 64) 163587 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 160-72 chr3 112379529 112379617 + 2 NA Intergenic Intergenic 46417 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 153-73 chr4 66632024 66632159 + 2 NA Intergenic LTR78|LTR|ERV1 355267 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 345-362 chr3 121149537 121149769 + 2 NA intron (NR_145517, intron 7 of 8) L1M5|LINE|L1 100013 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 415-146 chr2 224435734 224435962 + 2 NA Intergenic Intergenic -33741 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 296-481 chr8 119570304 119570497 + 2 NA intron (NM_001330600, intron 21 of 25) L1MC1|LINE|L1 22608 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 299-68 chr10 113313073 113313366 + 2 NA Intergenic Intergenic 183948 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 347-475 chr7 78169911 78170221 + 2 NA intron (NM_001301128, intron 13 of 20) intron (NM_001301128, intron 13 of 20) -177176 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 598-61 chr19 8076973 8077456 + 2 NA intron (NM_032447, intron 59 of 63) LTR87|LTR|ERVL? 24452 NM_001201359 6370 Hs.310511 NM_005624 ENSG00000131142 CCL25 Ckb15|SCYA25|TECK C-C motif chemokine ligand 25 protein-coding 485-264 chr7 48407121 48407577 + 2 NA intron (NM_152701, intron 39 of 61) AluSz6|SINE|Alu 235891 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 253-125 chr14 27520749 27520916 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -91756 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 291-423 chr7 132209269 132209451 + 2 NA intron (NM_020911, intron 10 of 31) intron (NM_020911, intron 10 of 31) -51501 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 132-32 chr16 72357880 72358000 + 2 NA intron (NR_126330, intron 8 of 13) intron (NR_126330, intron 8 of 13) -185490 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 207-258 chr6 67292123 67292274 + 2 NA Intergenic Intergenic -763153 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 145-27 chr14 34409050 34409166 + 2 NA Intergenic Intergenic 53132 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 511-77 chr15 73153698 73154114 + 2 NA intron (NM_002499, intron 5 of 28) intron (NM_002499, intron 5 of 28) 101422 NM_001172623 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 289-277 chr21 28421018 28421221 + 2 NA Intergenic L2b|LINE|L2 -118199 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 379-375 chr9 73714704 73715079 + 2 NA Intergenic L1MCb|LINE|L1 563026 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 344-320 chr3 88348706 88348888 + 2 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 10341 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 259-112 chr14 51845148 51845319 + 2 NA Intergenic AluJb|SINE|Alu -15379 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 386-191 chr2 176164418 176164626 + 2 NA intron (NM_006898, intron 2 of 3) intron (NM_006898, intron 2 of 3) 7215 NM_006898 3232 Hs.93574 NM_006898 ENSG00000128652 HOXD3 HOX1D|HOX4|HOX4A|Hox-4.1 homeobox D3 protein-coding 459-236 chr5 54120148 54120558 + 2 NA intron (NM_019087, intron 3 of 4) intron (NM_019087, intron 3 of 4) -168754 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 398-358 chr8 102707331 102707663 + 2 NA Intergenic Intergenic 51249 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 389-279 chr5 10117197 10117499 + 2 NA Intergenic MIRc|SINE|MIR 132540 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 653-56 chr18 35558365 35558776 + 2 NA Intergenic AluSz6|SINE|Alu -33167 NR_039771 100616257 NR_039771 ENSG00000283514 MIR3975 - microRNA 3975 ncRNA 286-76 chr11 104974163 104974356 + 2 NA Intergenic MER4B-int|LTR|ERV1 -5685 NM_001225 837 Hs.138378 NM_001225 ENSG00000196954 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX caspase 4 protein-coding 279-351 chr5 175627734 175627880 + 2 NA Intergenic Intergenic -30264 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 294-38 chr10 52144935 52145139 + 2 NA intron (NM_001098512, intron 8 of 17) intron (NM_001098512, intron 8 of 17) 169091 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 260-200 chr2 19044671 19044828 + 2 NA Intergenic Intergenic -17778 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 464-6 chr1 72777610 72777890 + 2 NA Intergenic Intergenic -495211 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 365-372 chr7 44396719 44396918 + 2 NA intron (NM_015332, intron 4 of 5) intron (NM_015332, intron 4 of 5) -71187 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 307-192 chr17 70051671 70051884 + 2 NA intron (NR_104130, intron 1 of 1) intron (NR_104130, intron 1 of 1) 506 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 524-41 chr11 92645278 92645703 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 270138 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 296-345 chr4 85951409 85951571 + 2 NA intron (NM_031305, intron 2 of 6) intron (NM_031305, intron 2 of 6) 21474 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 116-21 chr2 112239156 112239257 + 2 NA intron (NM_032494, intron 2 of 8) intron (NM_032494, intron 2 of 8) 15836 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 473-99 chr15 98139653 98140058 + 2 NA Intergenic MIRc|SINE|MIR -51102 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 275-145 chr17 58545656 58545914 + 2 NA intron (NR_110810, intron 4 of 4) (CT)n|Simple_repeat|Simple_repeat -1457 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 329-54 chr10 52448981 52449146 + 2 NA Intergenic Intergenic 6209 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 256-253 chr3 25464969 25465202 + 2 NA intron (NR_110892, intron 2 of 6) L1ME4a|LINE|L1 6775 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 528-209 chr5 143190998 143191384 + 2 NA intron (NM_001349547, intron 20 of 21) L1MB7|LINE|L1 -1309 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 366-97 chr12 33894251 33894513 + 2 NA Intergenic L1PA7|LINE|L1 -128114 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 290-406 chr7 15952364 15952530 + 2 NA Intergenic L3|LINE|CR1 -258039 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 507-261 chr8 127524983 127525341 + 2 NA Intergenic MIRb|SINE|MIR -43023 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 385-103 chr14 94649414 94649651 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy 8807 NR_015340 388007 Hs.527795 NR_015340 ENSG00000187483 SERPINA13P SERPINA13|UNQ6121 serpin family A member 13, pseudogene pseudo 249-48 chr10 51417644 51417817 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 118157 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 146-33 chr16 7480400 7480530 + 2 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 147620 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 497-116 chr2 35752019 35752374 + 2 NA Intergenic L1MB8|LINE|L1 280791 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 246-203 chr2 118567193 118567370 + 2 NA Intergenic Intergenic 35685 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 260-232 chr2 230459091 230459300 + 2 NA intron (NM_001080391, intron 8 of 28) intron (NM_001080391, intron 8 of 28) 42439 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 379-133 chr18 61696033 61696356 + 2 NA Intergenic Intergenic -51982 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 335-529 chr8 64703698 64703947 + 2 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 94915 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 272-188 chr2 60083374 60083556 + 2 NA Intergenic L1MC3|LINE|L1 299571 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 430-88 chr14 62817194 62817544 + 2 NA intron (NM_139318, intron 8 of 10) L1M3c|LINE|L1 228089 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 388-260 chr4 152827267 152827545 + 2 NA intron (NM_001287433, intron 2 of 8) L1MC1|LINE|L1 47452 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 204-72 chr13 57901705 57901846 + 2 NA Intergenic Intergenic -264052 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 362-198 chr18 24761361 24761581 + 2 NA intron (NR_134604, intron 2 of 2) L1ME3A|LINE|L1 35690 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 266-266 chr3 164435145 164435372 + 2 NA Intergenic Intergenic -263702 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 308-39 chr1 210390216 210390391 + 2 NA intron (NM_001170564, intron 4 of 9).2 L1ME3Cz|LINE|L1 60937 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 336-347 chr22 22985191 22985416 + 2 NA Intergenic Intergenic -85216 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 221-231 chr5 6478057 6478260 + 2 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 29299 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 330-200 chr16 84159644 84159896 + 2 NA exon (NM_001318756, exon 2 of 8) exon (NM_001318756, exon 2 of 8) 730 NM_001318756 123872 Hs.310164 NM_178452 ENSG00000154099 DNAAF1 CILD13|LRRC50|ODA7|swt dynein axonemal assembly factor 1 protein-coding 198-5 chr1 60527708 60527841 + 2 NA intron (NR_146508, intron 7 of 7) intron (NR_146508, intron 7 of 7) 94911 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 469-86 chr14 66429335 66429790 + 2 NA Intergenic AluJb|SINE|Alu -56809 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 405-21 chr10 10178843 10179214 + 2 NA Intergenic Intergenic 120306 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 351-104 chr13 41003795 41004071 + 2 NA intron (NM_001370329, intron 1 of 9) intron (NM_001370329, intron 1 of 9) 15383 NM_001370332 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 130-24 chr14 79364624 79364711 + 2 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 85287 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 221-238 chr5 41204544 41204699 + 2 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 8911 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 442-255 chr6 92399628 92399898 + 2 NA Intergenic Intergenic -709335 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 383-200 chr2 121054543 121054791 + 2 NA Intergenic Intergenic 230535 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 315-523 chrX 57344505 57344741 + 2 NA intron (NR_148564, intron 5 of 11) L1PA16|LINE|L1 57769 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 352-331 chr3 140029224 140029433 + 2 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 94143 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 460-249 chr5 132489601 132489894 + 2 NA intron (NM_001354924, intron 1 of 8) intron (NM_001354924, intron 1 of 8) 1026 NM_002198 3659 Hs.436061 NM_002198 ENSG00000125347 IRF1 IRF-1|MAR interferon regulatory factor 1 protein-coding 282-24 chr1 211199601 211199803 + 2 NA Intergenic Intergenic -59575 NR_146432 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 209-296 chr7 42405570 42405773 + 2 NA Intergenic Intergenic -168462 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 553-208 chr6 101109112 101109546 + 2 NA Intergenic L3|LINE|CR1 -227957 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 396-358 chr8 131131939 131132172 + 2 NA Intergenic Intergenic -91146 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 371-75 chr11 109261151 109261508 + 2 NA Intergenic L1MA10|LINE|L1 -160861 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 228-214 chr3 71314551 71314713 + 2 NA intron (NM_001349340, intron 3 of 19) intron (NM_001349340, intron 3 of 19) -9861 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 282-363 chr5 12385909 12386065 + 2 NA Intergenic L1MCa|LINE|L1 -188870 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 357-316 chr4 91710416 91710763 + 2 NA Intergenic L1M3b|LINE|L1 566713 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 478-115 chr17 44603439 44603823 + 2 NA Intergenic AluJr|SINE|Alu 46147 NM_001466 2535 Hs.142912 NM_001466 ENSG00000180340 FZD2 Fz2|OMOD2|fz-2|fzE2|hFz2 frizzled class receptor 2 protein-coding 351-203 chr2 7890117 7890430 + 2 NA intron (NR_110256, intron 3 of 5) MER94|DNA|hAT-Blackjack 9382 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 411-50 chr11 13197470 13197854 + 2 NA Intergenic L1PA16|LINE|L1 -78990 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 370-357 chr4 106840520 106840728 + 2 NA Intergenic L1MA9|LINE|L1 195689 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 482-48 chr11 34863650 34864067 + 2 NA Intergenic Intergenic -52272 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 253-205 chr2 186562591 186562750 + 2 NA Intergenic L1MA3|LINE|L1 -27386 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 265-322 chr5 144734208 144734451 + 2 NA Intergenic Intergenic 528938 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 244-152 chr2 21763245 21763411 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -52676 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 233-213 chr21 31075340 31075501 + 2 NA Intergenic Intergenic -36944 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 375-304 chr4 129453204 129453553 + 2 NA Intergenic MIR|SINE|MIR 318100 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 493-311 chr9 11397692 11398051 + 2 NA Intergenic Intergenic 784665 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 304-71 chr11 10612361 10612628 + 2 NA intron (NM_001100163, intron 10 of 20) L1M7|LINE|L1 39807 NM_001098579 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 512-70 chr12 124111877 124112254 + 2 NA intron (NM_001347902, intron 2 of 4) L2c|LINE|L2 138850 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 376-385 chr7 85744521 85744875 + 2 NA Intergenic HERVIP10F-int|LTR|ERV1 323576 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 257-59 chr11 35088956 35089153 + 2 NA Intergenic LTR88b|LTR|Gypsy? 48978 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 483-39 chr11 79027325 79027729 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 374582 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 355-315 chr3 26106591 26106914 + 2 NA Intergenic L1PB4|LINE|L1 -233057 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 172-126 chr7 67805357 67805463 + 2 NA Intergenic MER97c|DNA|hAT-Tip100 -214843 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 272-233 chr2 220776376 220776636 + 2 NA Intergenic Intergenic 795798 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 427-120 chr2 81931712 81932027 + 2 NA Intergenic L1ME3Cz|LINE|L1 -464923 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 180-22 chr10 76807514 76807637 + 2 NA Intergenic L1MC4|LINE|L1 -80469 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 506-204 chr4 59293198 59293610 + 2 NA Intergenic Intergenic 279831 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 210-229 chr5 110431417 110431605 + 2 NA intron (NM_001039763, intron 12 of 13) L1MEg|LINE|L1 82404 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 349-139 chr12 124053693 124053961 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 80612 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 217-47 chr10 65946306 65946468 + 2 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 374962 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 221-251 chr5 133380057 133380216 + 2 NA intron (NM_015082, intron 4 of 15) L1M4b|LINE|L1 47570 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 283-436 chr8 76986789 76986995 + 2 NA intron (NM_001079867, intron 1 of 2) L2c|LINE|L2 13186 NM_000318 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 282-211 chr2 79714101 79714249 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -64816 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 187-140 chr5 100418603 100418723 + 2 NA Intergenic Intergenic -30409 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 608-124 chr5 109125307 109125664 + 2 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 200879 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 456-23 chr1 227623633 227624014 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 60267 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 217-112 chr14 56402203 56402388 + 2 NA Intergenic L1MB8|LINE|L1 -112036 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 437-46 chr12 12316826 12317180 + 2 NA Intergenic AluY|SINE|Alu 33239 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 375-308 chr4 168046065 168046257 + 2 NA Intergenic Intergenic -46376 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 382-223 chr2 155046964 155047305 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 348439 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 510-38 chr11 21266843 21267250 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 597460 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 593-49 chr15 54080517 54081048 + 2 NA intron (NM_001329919, intron 2 of 31) L1PA17|LINE|L1 68134 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 299-182 chr18 64069971 64070210 + 2 NA Intergenic L1M5|LINE|L1 -34001 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 234-400 chr9 25532727 25532909 + 2 NA Intergenic L3|LINE|CR1 146040 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 332-282 chr2 217679208 217679472 + 2 NA intron (NR_026597, intron 1 of 12) L1ME2|LINE|L1 77253 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 330-252 chr2 30346153 30346449 + 2 NA promoter-TSS (NR_122048) promoter-TSS (NR_122048) -345 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 275-319 chr6 140274650 140274915 + 2 NA Intergenic Intergenic 69530 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 318-124 chr12 2152177 2152398 + 2 NA intron (NM_199460, intron 3 of 49).2 MLT1J|LTR|ERVL-MaLR 71194 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 345-19 chr1 114816470 114816776 + 2 NA Intergenic Intergenic -35938 NM_025073 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 257-390 chr7 71382689 71382884 + 2 NA intron (NM_022479, intron 2 of 10) intron (NM_022479, intron 2 of 10) -75016 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 336-444 chr5 8197854 8198097 + 2 NA Intergenic Intergenic 259589 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 338-496 chr7 26559849 26560112 + 2 NA Intergenic L1MB2|LINE|L1 -21155 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 469-186 chr3 109368211 109368541 + 2 NA Intergenic L1M3|LINE|L1 -30804 NM_018189 55211 Hs.317659 NM_018189 ENSG00000121570 DPPA4 2410091M23Rik developmental pluripotency associated 4 protein-coding 194-185 chr6 91560978 91561136 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 39397 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 246-15 chr1 157764338 157764529 + 2 NA intron (NM_001159488, intron 7 of 8) L1M2|LINE|L1 12699 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 214-289 chr6 156532152 156532363 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie 153507 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 694-126 chr8 48710492 48710993 + 2 NA TTS (NR_157027) TTS (NR_157027) 24526 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 374-79 chr12 124138172 124138401 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) -150878 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 374-382 chr8 65355631 65355886 + 2 NA Intergenic L1PREC2|LINE|L1 -175418 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 352-477 chr6 164575171 164575396 + 2 NA Intergenic L1MB8|LINE|L1 246780 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 303-456 chr8 88754815 88755065 + 2 NA Intergenic L1ME2|LINE|L1 -427457 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 511-177 chr3 117212317 117212664 + 2 NA Intergenic L1MB2|LINE|L1 291059 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 638-111 chr4 188846323 188846920 + 2 NA Intergenic L1MC4a|LINE|L1 69964 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 310-487 chr7 87776393 87776587 + 2 NA intron (NM_138290, intron 8 of 11) L1ME3E|LINE|L1 -63167 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 322-63 chr10 70201849 70202086 + 2 NA TTS (NM_021129) TTS (NM_021129) -31453 NM_020150 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 314-413 chr4 34411238 34411486 + 2 NA Intergenic L1PA14|LINE|L1 -141615 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 388-375 chr9 115359157 115359426 + 2 NA intron (NR_163556, intron 4 of 7) intron (NR_163556, intron 4 of 7) 217473 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 394-346 chrX 29846613 29846833 + 2 NA intron (NM_014271, intron 6 of 10) intron (NM_014271, intron 6 of 10) 272445 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 187-9 chr1 76528174 76528348 + 2 NA intron (NM_001349109, intron 3 of 3) MIRb|SINE|MIR 251006 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 343-378 chr4 33591340 33591643 + 2 NA Intergenic LTR9D|LTR|ERV1 448402 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 792-11 chr11 24306063 24306565 + 2 NA Intergenic Intergenic -190739 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 232-115 chr15 88346965 88347148 + 2 NA Intergenic Intergenic -90317 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 457-177 chr4 68216020 68216407 + 2 NA intron (NR_104048, intron 1 of 9) intron (NR_104048, intron 1 of 9) 1867 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 134-92 chr9 27750977 27751069 + 2 NA Intergenic Intergenic -177157 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 446-83 chr12 90311670 90312035 + 2 NA Intergenic Intergenic 18534 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 269-221 chr20 12066884 12067031 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 149064 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 301-189 chr2 3284906 3285167 + 2 NA intron (NM_001330530, intron 3 of 9) intron (NM_001330530, intron 3 of 9) 92782 NM_001330530 7260 Hs.502770 NM_003310 ENSG00000032389 EIPR1 EIPR-1|TSSC1 EARP complex and GARP complex interacting protein 1 protein-coding 257-247 chr21 20256183 20256432 + 2 NA TTS (NR_151724) TTS (NR_151724) 2378 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 244-123 chr16 69609140 69609355 + 2 NA intron (NM_138714, intron 2 of 15) intron (NM_138714, intron 2 of 15) 43281 NM_173215 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 253-298 chr4 80862995 80863145 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -167638 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 416-347 chr8 143831687 143832048 + 2 NA Intergenic HAL1|LINE|L1 -2552 NM_001271098 22827 Hs.521924 NM_014281 ENSG00000179950 PUF60 FIR|RoBPI|SIAHBP1|VRJS poly(U) binding splicing factor 60 protein-coding 424-266 chr7 92189956 92190293 + 2 NA Intergenic L1PA16|LINE|L1 13974 NR_031616 100302218 NR_031616 ENSG00000221520 MIR1285-1 MIRN1285-1|hsa-mir-1285-1 microRNA 1285-1 ncRNA 509-51 chr11 129141516 129141814 + 2 NA intron (NM_001142685, intron 2 of 21) L1MB2|LINE|L1 50533 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 325-239 chr18 60952679 60952978 + 2 NA Intergenic Intergenic -380602 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 628-113 chr6 64579224 64579712 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) -721950 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 281-156 chr17 11756874 11757066 + 2 NA intron (NM_001372, intron 34 of 68) intron (NM_001372, intron 34 of 68) -125932 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 248-2 chr1 23877108 23877289 + 2 NA intron (NM_001841, intron 1 of 1) L1ME3A|LINE|L1 -8829 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 321-513 chr7 4903117 4903290 + 2 NA intron (NR_072989, intron 8 of 8) AluSx1|SINE|Alu -19487 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 386-236 chr3 48311047 48311364 + 2 NA intron (NM_001080525, intron 3 of 4) L1MB5|LINE|L1 5254 NR_031749 100313840 NR_031749 ENSG00000252466 MIR2115 - microRNA 2115 ncRNA 260-44 chr10 43969010 43969183 + 2 NA intron (NR_033846, intron 7 of 7) intron (NR_033846, intron 7 of 7) 56694 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 481-214 chr4 30692998 30693350 + 2 NA Intergenic L1MB8|LINE|L1 -27195 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 528-161 chr3 103073354 103073862 + 2 NA Intergenic AluSq|SINE|Alu 450508 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 414-229 chr4 45836686 45837065 + 2 NA Intergenic MIRb|SINE|MIR 287179 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 260-448 chr8 134180937 134181115 + 2 NA Intergenic Intergenic 294530 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 183-75 chr2 51116810 51116916 + 2 NA intron (NR_135237, intron 2 of 10) L1MB1|LINE|L1 84262 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 143-86 chr8 130821494 130821610 + 2 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 219357 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 401-320 chr8 69000920 69001220 + 2 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 103120 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 269-376 chr7 25062631 25062871 + 2 NA Intergenic Intergenic 62610 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 174-6 chr1 169743599 169743753 + 2 NA Intergenic MIRb|SINE|MIR -9597 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 176-17 chr11 81643005 81643100 + 2 NA Intergenic Intergenic 247784 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 468-258 chr5 96545666 96546001 + 2 NA intron (NR_130776, intron 4 of 4) ERVL-E-int|LTR|ERVL -112585 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 326-571 chr9 78841750 78841989 + 2 NA Intergenic LTR78|LTR|ERV1 303797 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 187-8 chr1 70383743 70383857 + 2 NA Intergenic Tigger9a|DNA|TcMar-Tigger -27418 NM_001190463 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 454-170 chr2 123708704 123708994 + 2 NA Intergenic L1MB4|LINE|L1 316325 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 264-240 chr20 41956724 41956957 + 2 NA Intergenic Intergenic -338463 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 290-361 chr5 116112838 116113063 + 2 NA intron (NM_001308080, intron 4 of 6) L1PB4|LINE|L1 27488 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 208-186 chr4 83560463 83560641 + 2 NA intron (NM_001256421, intron 3 of 12) intron (NM_001256421, intron 3 of 12) 24444 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 138-82 chr7 46876146 46876247 + 2 NA Intergenic L1MB7|LINE|L1 -179074 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 429-180 chr20 58976983 58977343 + 2 NA Intergenic Intergenic -4093 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 429-88 chr14 52200677 52201014 + 2 NA Intergenic Intergenic -66853 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 373-14 chr1 79952486 79952688 + 2 NA Intergenic L2|LINE|L2 -583168 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 405-294 chr7 11158697 11158966 + 2 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 184959 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 292-424 chr8 53157242 53157429 + 2 NA Intergenic L1MA4|LINE|L1 94302 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 319-217 chr19 34612664 34612927 + 2 NA intron (NR_027620, intron 1 of 3) L1MA5|LINE|L1 -18210 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 331-325 chr21 31071484 31071754 + 2 NA Intergenic AluSz6|SINE|Alu -33143 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 462-55 chr11 124272490 124272931 + 2 NA Intergenic Intergenic 7883 NM_001005198 219865 Hs.722725 NM_001005198 ENSG00000255298 OR8G5 OR11-298|OR8G5P|OR8G6 olfactory receptor family 8 subfamily G member 5 protein-coding 349-20 chr1 99702656 99702934 + 2 NA intron (NR_031666, intron 1 of 4) L3|LINE|CR1 10158 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 319-557 chr8 135811350 135811533 + 2 NA Intergenic Intergenic 353985 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 152-34 chr16 18039332 18039479 + 2 NA Intergenic Intergenic 293257 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 189-141 chr4 44626564 44626680 + 2 NA intron (NM_182592, intron 4 of 5) intron (NM_182592, intron 4 of 5) 25019 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 223-70 chr12 124088950 124089168 + 2 NA intron (NM_001347902, intron 2 of 4) AluSx1|SINE|Alu 115844 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 436-20 chr1 185374708 185375018 + 2 NA Intergenic Intergenic -39824 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 304-348 chr3 106047239 106047536 + 2 NA Intergenic MER65D|LTR|ERV1 -177986 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 527-126 chr2 56828433 56828869 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -642881 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 567-7 chr1 94910960 94911376 + 2 NA intron (NM_001839, intron 1 of 6) intron (NM_001839, intron 1 of 6) 14640 NM_001286056 1266 Hs.483454 NM_001839 ENSG00000117519 CNN3 - calponin 3 protein-coding 350-513 chr8 79239601 79239858 + 2 NA Intergenic (GTAATA)n|Simple_repeat|Simple_repeat -92459 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 474-313 chrX 48453806 48454265 + 2 NA Intergenic AluSx|SINE|Alu 16225 NM_033518 92745 Hs.195155 NM_033518 ENSG00000017483 SLC38A5 JM24|SN2|SNAT5|pp7194 solute carrier family 38 member 5 protein-coding 306-378 chr5 8914999 8915240 + 2 NA Intergenic Intergenic 75387 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 649-41 chr18 60979389 60979786 + 2 NA Intergenic Intergenic -353843 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 456-316 chr8 87100631 87100915 + 2 NA intron (NM_173538, intron 4 of 10) AluSg7|SINE|Alu 234358 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 408-192 chr21 19598521 19598731 + 2 NA Intergenic Intergenic 301129 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 537-215 chr6 71022239 71022629 + 2 NA Intergenic Intergenic -65374 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 379-145 chr2 6336370 6336627 + 2 NA Intergenic Intergenic 38924 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 339-130 chr12 81081490 81081808 + 2 NA intron (NM_024560, intron 1 of 15) intron (NM_024560, intron 1 of 15) 3570 NM_024560 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 368-236 chr2 106759129 106759472 + 2 NA Intergenic Intergenic 126728 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 386-240 chr3 86003087 86003440 + 2 NA intron (NM_001256502, intron 9 of 10) LTR40a|LTR|ERVL -175213 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 345-372 chr4 5580585 5580814 + 2 NA intron (NM_147127, intron 17 of 21) L1MEc|LINE|L1 55543 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 365-135 chr16 9330480 9330813 + 2 NA Intergenic Intergenic -24942 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 352-250 chr2 136316560 136316885 + 2 NA Intergenic Intergenic -198567 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 308-282 chr22 40724537 40724739 + 2 NA Intergenic L1M5|LINE|L1 45460 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 175-151 chr7 81145612 81145723 + 2 NA Intergenic L1M1|LINE|L1 -223278 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 574-26 chr12 18769682 18770134 + 2 NA Intergenic L1M4|LINE|L1 31789 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 151-37 chr2 117013928 117014071 + 2 NA Intergenic L1ME2|LINE|L1 -800692 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 465-239 chr5 132013440 132013833 + 2 NA Intergenic Intergenic -1568 NM_001205250 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 382-225 chr2 203647360 203647608 + 2 NA Intergenic L1ME3G|LINE|L1 -58991 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 365-6 chr1 67602099 67602309 + 2 NA Intergenic L1PB3|LINE|L1 -82997 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 152-23 chr13 37141525 37141655 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -35926 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 250-429 chr8 90428965 90429192 + 2 NA Intergenic Intergenic 176985 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 284-85 chr12 44915319 44915509 + 2 NA Intergenic Intergenic -1486 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 310-356 chr4 13847616 13847883 + 2 NA intron (NR_121681, intron 3 of 3) L1MA8|LINE|L1 192570 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 377-59 chr10 130754073 130754297 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger 208483 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 180-19 chr10 61330554 61330678 + 2 NA Intergenic Intergenic -122023 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 299-52 chr10 58533133 58533292 + 2 NA intron (NM_001080512, intron 1 of 20) HSMAR2|DNA|TcMar-Mariner 20340 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 604-6 chr1 182158663 182159078 + 2 NA Intergenic L1MB3|LINE|L1 -97158 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 585-156 chr8 4666463 4666978 + 2 NA intron (NM_033225, intron 1 of 69) L1ME1|LINE|L1 328194 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 210-142 chr2 143428797 143428951 + 2 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 299455 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 438-71 chr13 93122441 93122764 + 2 NA Intergenic AluJb|SINE|Alu 77261 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 326-228 chr2 13702284 13702584 + 2 NA Intergenic Intergenic -695421 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 543-53 chr11 103745352 103745813 + 2 NA Intergenic L1PA16|LINE|L1 -104324 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 372-294 chr21 26801361 26801658 + 2 NA Intergenic Intergenic 43900 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 324-467 chr6 75274536 75274737 + 2 NA intron (NM_018247, intron 1 of 6) L2c|LINE|L2 10156 NM_018247 55754 Hs.108530 NM_018247 ENSG00000112697 TMEM30A C6orf67|CDC50A transmembrane protein 30A protein-coding 527-95 chr15 33009854 33010232 + 2 NA intron (NM_001277313, intron 6 of 20) AluSq2|SINE|Alu 58131 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 321-216 chr16 59399932 59400200 + 2 NA Intergenic Intergenic 355125 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 297-160 chr16 51662865 51663094 + 2 NA Intergenic Intergenic -99540 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 252-47 chr10 66118735 66118887 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 547386 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 261-212 chr20 11578395 11578649 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 292193 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 337-102 chr11 114906311 114906495 + 2 NA Intergenic L1MA3|LINE|L1 227876 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 219-248 chr3 190426209 190426366 + 2 NA Intergenic Intergenic 23589 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 695-88 chr5 167692695 167693145 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -62009 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 272-348 chr5 67481599 67481772 + 2 NA Intergenic Intergenic 165104 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 621-124 chr8 5345862 5346335 + 2 NA Intergenic L1ME3A|LINE|L1 -351184 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 180-41 chr13 64377365 64377510 + 2 NA Intergenic Intergenic -301426 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 350-388 chr5 22852748 22852955 + 2 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 493 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 372-121 chr12 101103910 101104258 + 2 NA intron (NM_001286616, intron 21 of 26) L1ME3A|LINE|L1 -34474 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 218-125 chr17 66647375 66647567 + 2 NA intron (NM_002737, intron 5 of 16) intron (NM_002737, intron 5 of 16) -139601 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 307-65 chr10 81972542 81972725 + 2 NA intron (NR_163253, intron 2 of 10) L1MEc|LINE|L1 94946 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 455-3 chr1 46832816 46833217 + 2 NA Intergenic L1MC3|LINE|L1 33970 NM_001319163 1580 Hs.436317 NM_000779 ENSG00000142973 CYP4B1 CYPIVB1|P-450HP cytochrome P450 family 4 subfamily B member 1 protein-coding 336-301 chr2 184134847 184135104 + 2 NA Intergenic L1PA12|LINE|L1 -244000 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 321-532 chr7 81591728 81591902 + 2 NA intron (NR_126025, intron 6 of 10) L1MC4|LINE|L1 -29996 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 311-545 chr9 79947053 79947362 + 2 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) -27816 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 492-128 chr2 69621066 69621495 + 2 NA intron (NM_014911, intron 2 of 21) AluSx|SINE|Alu 22459 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 439-97 chr15 39175673 39175957 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -74854 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 282-104 chr12 105479801 105479979 + 2 NA Intergenic L2c|LINE|L2 149199 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 319-431 chr5 148368695 148368979 + 2 NA intron (NR_105057, intron 2 of 4) L1MB7|LINE|L1 15013 NR_105057 102546294 Hs.660461 NR_105057 ENSG00000247199 LOC102546294 - uncharacterized LOC102546294 ncRNA 320-449 chr5 96419307 96419467 + 2 NA intron (NM_001177875, intron 5 of 13) intron (NM_001177875, intron 5 of 13) 12772 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 594-96 chr3 191181223 191181628 + 2 NA Intergenic L2c|LINE|L2 -17816 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 241-100 chr14 36779952 36780140 + 2 NA intron (NM_001171170, intron 3 of 10) L1M3c|LINE|L1 122478 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 399-50 chr11 20923668 20924041 + 2 NA intron (NM_201551, intron 7 of 18) intron (NM_201551, intron 7 of 18) 254268 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 548-32 chr11 13418018 13418556 + 2 NA intron (NM_032320, intron 4 of 8) intron (NM_032320, intron 4 of 8) 21992 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 377-421 chr8 139328349 139328568 + 2 NA Intergenic L1ME3|LINE|L1 374665 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 200-171 chr3 42906853 42907032 + 2 NA intron (NM_001134656, intron 1 of 3) intron (NM_001134656, intron 1 of 3) 800 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 601-18 chr10 88842644 88843022 + 2 NA intron (NM_144590, intron 1 of 5) Tigger20a|DNA|TcMar-Tigger 9011 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 499-103 chr19 31528442 31528933 + 2 NA Intergenic Intergenic -59502 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 192-85 chr17 66172085 66172244 + 2 NA intron (NM_001353129, intron 4 of 26) L2b|LINE|L2 19728 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 935-29 chr4 57967333 57967927 + 2 NA Intergenic LTR12C|LTR|ERV1 541758 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 341-286 chr20 12577412 12577608 + 2 NA Intergenic L1MC3|LINE|L1 359453 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 305-219 chr18 56519866 56520148 + 2 NA Intergenic Intergenic 118585 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 333-51 chr10 36875524 36875746 + 2 NA Intergenic Intergenic -250222 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 149-50 chr2 45074008 45074121 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -64612 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 456-188 chr21 40534281 40534702 + 2 NA intron (NR_073202, intron 3 of 32) intron (NR_073202, intron 3 of 32) 96276 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 155-6 chr1 84177202 84177328 + 2 NA intron (NM_001300915, intron 4 of 11) intron (NM_001300915, intron 4 of 11) -4367 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 260-96 chr12 21978182 21978333 + 2 NA Intergenic LTR88c|LTR|Gypsy? -41563 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 355-518 chr8 135243888 135244215 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 9920 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 263-114 chr14 72135936 72136166 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 202524 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 211-46 chr11 31821616 31821787 + 2 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) -3740 NM_001368919 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 263-4 chr1 46960085 46960317 + 2 NA Intergenic L1MA5A|LINE|L1 -1163 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 520-71 chr12 118277035 118277425 + 2 NA intron (NM_001346490, intron 1 of 21) Charlie29a|DNA|hAT-Charlie 82475 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 394-318 chr8 13710105 13710360 + 2 NA Intergenic L1M1|LINE|L1 80542 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 565-56 chr17 34115969 34116295 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 40674 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 240-111 chr12 85271933 85272066 + 2 NA Intergenic Intergenic -8221 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 253-375 chr7 10216990 10217181 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -485591 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 365-211 chr2 163978211 163978516 + 2 NA Intergenic Intergenic -242355 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 355-198 chr17 65894606 65894879 + 2 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -68199 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 441-87 chr15 47560981 47561297 + 2 NA intron (NM_001198999, intron 3 of 19) L1M4a2|LINE|L1 -156366 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 206-226 chr5 166033754 166033931 + 2 NA Intergenic Intergenic 892528 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 136-64 chr4 81953217 81953316 + 2 NA Intergenic Intergenic 420725 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 278-376 chr6 120322141 120322341 + 2 NA Intergenic L1M4|LINE|L1 307062 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 213-188 chr3 179884837 179885003 + 2 NA intron (NM_001349401, intron 1 of 11) intron (NM_001349401, intron 1 of 11) -13274 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 326-583 chrX 42761544 42761764 + 2 NA Intergenic Intergenic 16509 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 269-340 chr6 48233531 48233721 + 2 NA Intergenic L1PA12|LINE|L1 -164937 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 304-553 chr9 101667403 101667611 + 2 NA intron (NM_133445, intron 3 of 8) intron (NM_133445, intron 3 of 8) 71073 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 330-4 chr1 24264961 24265225 + 2 NA Intergenic L2c|LINE|L2 -54264 NM_198174 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 351-123 chr14 57793558 57793813 + 2 NA intron (NR_159373, intron 1 of 10) L1PB3|LINE|L1 71314 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 260-107 chr12 76741290 76741486 + 2 NA Intergenic Intergenic -22686 NM_015336 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 170-42 chr13 98285287 98285380 + 2 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 76809 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 270-211 chr20 50536122 50536362 + 2 NA intron (NM_001278618, intron 1 of 8) intron (NM_001278618, intron 1 of 8) 25859 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 551-87 chr2 66519039 66519501 + 2 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -54760 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 348-527 chr8 107053944 107054212 + 2 NA Intergenic L1MB8|LINE|L1 282437 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 562-158 chr4 57964451 57964846 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 538776 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 383-138 chr16 6196611 6196988 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 177096 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 400-174 chr2 136235247 136235586 + 2 NA Intergenic Intergenic -117261 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 169-69 chr21 24061187 24061306 + 2 NA Intergenic Intergenic 260131 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 344-336 chr3 156438594 156438870 + 2 NA intron (NM_172159, intron 2 of 13) intron (NM_172159, intron 2 of 13) 8204 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 336-271 chr2 75994744 75995065 + 2 NA Intergenic L1M2|LINE|L1 -283989 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 317-403 chr5 175412128 175412408 + 2 NA Intergenic Intergenic 31914 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 400-325 chr7 56259169 56259516 + 2 NA Intergenic (ATGG)n|Simple_repeat|Simple_repeat -142925 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 385-360 chr7 81518345 81518589 + 2 NA intron (NR_136264, intron 4 of 4) intron (NR_136264, intron 4 of 4) 43352 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 442-84 chr14 80290703 80290981 + 2 NA intron (NR_038355, intron 2 of 8) L1MB7|LINE|L1 -59785 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 381-6 chr1 49099450 49099731 + 2 NA intron (NM_001323575, intron 4 of 12) MIRb|SINE|MIR -157821 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 206-176 chr4 32751905 32752053 + 2 NA Intergenic Intergenic 400941 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 561-105 chr2 139019580 139019981 + 2 NA Intergenic L1M4|LINE|L1 122456 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 645-129 chr8 132204395 132204793 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -99329 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 401-256 chr5 37627273 37627591 + 2 NA intron (NM_001345998, intron 10 of 17) L1MA5A|LINE|L1 207390 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 415-201 chr4 103551061 103551472 + 2 NA Intergenic Intergenic 126224 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 237-167 chr2 35476289 35476463 + 2 NA Intergenic Intergenic 4971 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 263-397 chr7 67408879 67409125 + 2 NA Intergenic Intergenic 73026 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 182-156 chr6 122081922 122082036 + 2 NA Intergenic Intergenic -317572 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 670-28 chr12 27210095 27210509 + 2 NA Intergenic L1MA5A|LINE|L1 -33984 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 276-402 chr6 66952180 66952422 + 2 NA Intergenic Intergenic -1103050 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 120-38 chr4 101246676 101246771 + 2 NA intron (NM_001130691, intron 1 of 12) (TA)n|Simple_repeat|Simple_repeat -5851 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 297-387 chr5 162717326 162717573 + 2 NA Intergenic Intergenic 649807 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 332-428 chr5 124185346 124185598 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 253048 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 318-199 chr16 72597427 72597591 + 2 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 67461 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 394-124 chr16 49969956 49970192 + 2 NA Intergenic AluJr|SINE|Alu -55132 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 182-117 chr3 191795040 191795215 + 2 NA Intergenic L1M4c|LINE|L1 333964 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 450-193 chr3 59944630 59945062 + 2 NA intron (NM_001320901, intron 5 of 6) L1PA15|LINE|L1 136063 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 637-25 chr12 16107920 16108266 + 2 NA Intergenic Intergenic 169592 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 329-594 chr8 132359651 132359894 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 87490 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 412-133 chr18 13205753 13206101 + 2 NA Intergenic L1MC4a|LINE|L1 -12833 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 289-31 chr1 197455015 197455225 + 2 NA intron (NR_047564, intron 11 of 11) MER94|DNA|hAT-Blackjack 186868 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 206-183 chr4 83604684 83604856 + 2 NA 3' UTR (NM_001256422, exon 13 of 13) 3' UTR (NM_001256422, exon 13 of 13) 68662 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 425-101 chr15 93758400 93758819 + 2 NA Intergenic Intergenic -97951 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 542-106 chr2 142523987 142524316 + 2 NA Intergenic Intergenic -353513 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 127-21 chr11 104010043 104010140 + 2 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) -26549 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 391-214 chr20 58557335 58557640 + 2 NA intron (NR_034147, intron 6 of 6) L2a|LINE|L2 -42088 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 442-42 chr11 23106390 23106780 + 2 NA Intergenic Intergenic -246111 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 180-167 chr8 81506260 81506377 + 2 NA Intergenic Intergenic -23085 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 394-33 chr10 21820060 21820429 + 2 NA intron (NM_022365, intron 8 of 11) L1MB8|LINE|L1 183486 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 348-414 chr5 76245906 76246081 + 2 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) -157292 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 209-355 chrX 149364311 149364511 + 2 NA Intergenic Intergenic 140895 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 244-236 chr3 120281156 120281358 + 2 NA Intergenic Intergenic -36962 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 440-150 chr22 27664788 27665031 + 2 NA Intergenic Intergenic 136847 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 363-187 chr18 25795856 25796134 + 2 NA Intergenic Intergenic 294618 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 337-320 chr21 16866934 16867105 + 2 NA Intergenic Intergenic 276782 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 368-279 chr22 48768470 48768724 + 2 NA Intergenic L1MEf|LINE|L1 -11698 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 302-269 chr22 43492201 43492493 + 2 NA intron (NM_001362786, intron 4 of 6) intron (NM_001362786, intron 4 of 6) -23907 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 153-10 chr1 216047361 216047473 + 2 NA intron (NM_206933, intron 31 of 71) intron (NM_206933, intron 31 of 71) -25048 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 241-236 chr3 76470583 76470754 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -569431 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 508-246 chr8 132096361 132096688 + 2 NA intron (NM_001145095, intron 4 of 15) intron (NM_001145095, intron 4 of 15) 8741 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 985-3 chr1 219455059 219455839 + 2 NA intron (NR_135822, intron 2 of 3) intron (NR_135822, intron 2 of 3) 101875 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 240-397 chr7 47785099 47785297 + 2 NA intron (NM_138295, intron 56 of 56) Charlie13a|DNA|hAT-Charlie -10093 NR_161268 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 275-45 chr10 61345654 61345814 + 2 NA Intergenic LTR80A|LTR|ERVL -106905 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 377-222 chr2 142351849 142352064 + 2 NA Intergenic L1MB3|LINE|L1 -220255 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 275-231 chr21 28923569 28923805 + 2 NA Intergenic L1MEg|LINE|L1 -38314 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 334-506 chr7 110190684 110190961 + 2 NA Intergenic L1ME3Cz|LINE|L1 -230609 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 329-250 chr19 37417980 37418158 + 2 NA intron (NM_001330482, intron 4 of 4) AluSg|SINE|Alu 46970 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 374-258 chr3 122158959 122159244 + 2 NA Intergenic L1MA3|LINE|L1 -24567 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 310-159 chr15 79144831 79144993 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -54132 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 604-73 chr19 11721478 11721946 + 2 NA exon (NM_017507, exon 3 of 3) exon (NM_017507, exon 3 of 3) 17234 NM_001297610 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 222-8 chr1 100907058 100907258 + 2 NA intron (NM_133496, intron 3 of 10) L1ME3A|LINE|L1 11068 NM_001144884 148867 Hs.533903 NM_133496 ENSG00000162695 SLC30A7 ZNT7|ZnT-7|ZnTL2 solute carrier family 30 member 7 protein-coding 548-69 chr14 57164348 57164834 + 2 NA Intergenic Intergenic 104314 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 206-208 chr5 73300528 73300679 + 2 NA Intergenic Intergenic -37303 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 318-402 chr4 66525388 66525565 + 2 NA Intergenic Intergenic 248652 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 381-239 chr3 153013 153345 + 2 NA Intergenic Intergenic -43417 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 280-324 chr5 64530327 64530575 + 2 NA intron (NM_001029875, intron 2 of 5) MIRc|SINE|MIR 24436 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 292-452 chr8 139933170 139933349 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 167276 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 169-134 chr8 67857193 67857332 + 2 NA Intergenic L1M5|LINE|L1 -94784 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 442-136 chr2 99955887 99956248 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 149516 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 360-268 chr20 48003855 48004107 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -13864 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 337-38 chr1 235512169 235512474 + 2 NA Intergenic L2a|LINE|L2 -7869 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 341-303 chr20 48372647 48372905 + 2 NA Intergenic MER113A|DNA|hAT-Charlie 12865 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 411-290 chr8 88788119 88788470 + 2 NA Intergenic Intergenic -460811 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 499-40 chr11 35846123 35846482 + 2 NA Intergenic ERVL-int|LTR|ERVL -97679 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 216-304 chr6 55691375 55691527 + 2 NA Intergenic L1M5|LINE|L1 -112237 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 455-121 chr2 50930970 50931284 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 101005 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 749-55 chr2 136267276 136267726 + 2 NA Intergenic Intergenic -149346 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 392-97 chr15 69753075 69753318 + 2 NA Intergenic HAL1|LINE|L1 -82038 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 349-514 chr8 139736262 139736452 + 2 NA intron (NM_001160372, intron 21 of 22) L2b|LINE|L2 -33234 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 487-229 chr5 50269388 50269779 + 2 NA Intergenic L1MCb|LINE|L1 171705 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 397-54 chr11 85220604 85220852 + 2 NA intron (NM_001142699, intron 4 of 27) intron (NM_001142699, intron 4 of 27) -297307 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 493-127 chr19 28260008 28260423 + 2 NA Intergenic L1P4|LINE|L1 -346473 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 340-106 chr12 37907850 37908129 + 2 NA Intergenic ALR/Alpha|Satellite|centr -408785 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 318-560 chr8 133788478 133788674 + 2 NA Intergenic Intergenic -11224 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 468-129 chr19 29131926 29132292 + 2 NA Intergenic Intergenic 81042 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 497-5 chr1 92158010 92158291 + 2 NA Intergenic L1MB1|LINE|L1 -10774 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 417-274 chr7 154409343 154409696 + 2 NA intron (NR_157196, intron 1 of 25) L1MD3|LINE|L1 104360 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 388-328 chr7 66264359 66264600 + 2 NA intron (NM_003596, intron 2 of 5) L1M4|LINE|L1 59145 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 343-459 chr6 25736757 25737077 + 2 NA Intergenic LTR8A|LTR|ERV1 4484 NR_045125 387319 Hs.741681 NR_045125 HIST1H2APS1 H2AFSP|bA317E16.5 histone cluster 1 H2A pseudogene 1 pseudo 193-119 chr2 167483897 167484082 + 2 NA Intergenic Intergenic 296617 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 294-156 chr16 72032517 72032732 + 2 NA Intergenic LTR49-int|LTR|ERV1 -21881 NM_005143 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 151-32 chr18 54024595 54024731 + 2 NA Intergenic Intergenic 197749 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 343-218 chr19 52329229 52329566 + 2 NA Intergenic Intergenic -6846 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 369-219 chr2 165431218 165431554 + 2 NA Intergenic L2c|LINE|L2 -38312 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 321-180 chr14 74023793 74024071 + 2 NA intron (NM_025057, intron 2 of 11) AluSx3|SINE|Alu 4583 NM_025057 80127 Hs.644621 NM_025057 ENSG00000119636 BBOF1 C14orf45|CCDC176 basal body orientation factor 1 protein-coding 243-149 chr16 7292985 7293189 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -39758 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 547-103 chr2 114506896 114507308 + 2 NA intron (NM_001321908, intron 2 of 25) AluJb|SINE|Alu 45525 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 335-327 chr22 47651445 47651767 + 2 NA intron (NR_122046, intron 2 of 8) (TCTA)n|Simple_repeat|Simple_repeat 19932 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 298-78 chr11 83486937 83487140 + 2 NA intron (NM_001142699, intron 21 of 27) intron (NM_001142699, intron 21 of 27) 195387 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 350-281 chr20 56998290 56998495 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -215304 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 232-19 chr1 188913659 188913875 + 2 NA Intergenic L1ME2|LINE|L1 1470139 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 243-448 chr8 87683612 87683758 + 2 NA Intergenic Intergenic 190330 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 282-267 chr20 53425596 53425797 + 2 NA intron (NM_173485, intron 2 of 2) MER58B|DNA|hAT-Charlie -127074 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 697-46 chr2 228957236 228957733 + 2 NA Intergenic Intergenic 274608 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 726-64 chr5 155699555 155700192 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -626884 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 241-119 chr14 78921167 78921365 + 2 NA intron (NM_004796, intron 7 of 16) L2b|LINE|L2 -278716 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 186-149 chr7 41701912 41702091 + 2 NA intron (NM_002192, intron 1 of 2) intron (NM_002192, intron 1 of 2) 1089 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 544-73 chr15 25065447 25065846 + 2 NA TTS (NR_003317).2 TTS (NR_003317).2 621 NR_003321 100033418 NR_003321 ENSG00000207442 SNORD116-6 HBII-85-6 small nucleolar RNA, C/D box 116-6 snoRNA 293-246 chr22 47545200 47545371 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -58174 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 355-435 chr6 68144774 68144969 + 2 NA Intergenic L1M1|LINE|L1 89520 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 311-555 chrX 58532179 58532402 + 2 NA Intergenic ALR/Alpha|Satellite|centr -621657 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 342-147 chr14 72193751 72193998 + 2 NA intron (NM_001370288, intron 2 of 16) L2a|LINE|L2 260347 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 481-201 chr3 103632521 103632888 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -108588 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 231-315 chr6 133221315 133221486 + 2 NA Intergenic Intergenic -19957 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 354-173 chr17 51744492 51744763 + 2 NA intron (NM_001082533, intron 5 of 9) AluJr4|SINE|Alu 309200 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 674-83 chr5 174548419 174548921 + 2 NA Intergenic Intergenic -175912 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 277-439 chr9 10672070 10672256 + 2 NA Intergenic L1PA15|LINE|L1 58957 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 326-358 chr3 154366318 154366510 + 2 NA intron (NM_001038705, intron 3 of 3) MER4D|LTR|ERV1 -41917 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 213-172 chr3 8262760 8262912 + 2 NA intron (NR_033378, intron 3 of 3) L1M4|LINE|L1 238822 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 355-88 chr11 40202748 40203095 + 2 NA intron (NM_020929, intron 3 of 4) intron (NM_020929, intron 3 of 4) 90209 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 506-68 chr12 69322798 69323111 + 2 NA Intergenic MER74B|LTR|ERVL -25400 NM_000239 4069 Hs.524579 NM_000239 ENSG00000090382 LYZ LYZF1|LZM lysozyme protein-coding 178-90 chr3 105806326 105806448 + 2 NA intron (NR_135809, intron 3 of 18) intron (NR_135809, intron 3 of 18) 61204 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 291-388 chr6 101484595 101484847 + 2 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 85736 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 299-229 chr2 147345480 147345755 + 2 NA Intergenic MLT1G-int|LTR|ERVL-MaLR -498900 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 376-300 chr4 137433344 137433592 + 2 NA Intergenic Intergenic 99026 NM_001300828 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 387-371 chr8 119145271 119145559 + 2 NA Intergenic Intergenic -62948 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 227-90 chr12 118891161 118891313 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -57701 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 534-244 chr7 145494056 145494418 + 2 NA Intergenic Intergenic -658184 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 473-220 chr5 62815969 62816267 + 2 NA Intergenic Intergenic 237299 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 520-333 chrX 65418620 65418991 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -69930 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 306-512 chr8 104766678 104766933 + 2 NA Intergenic Intergenic -177781 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 544-40 chr11 13147047 13147441 + 2 NA Intergenic AluSz6|SINE|Alu -129408 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 316-397 chr4 66031253 66031472 + 2 NA Intergenic L1MA3|LINE|L1 -245462 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 441-43 chr11 79674391 79674728 + 2 NA Intergenic MIR|SINE|MIR -233529 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 351-400 chr5 146043091 146043296 + 2 NA intron (NM_152550, intron 5 of 9) intron (NM_152550, intron 5 of 9) 62384 NM_001029869 153770 Hs.162369 NM_001029869 ENSG00000173261 PLAC8L1 - PLAC8 like 1 protein-coding 370-124 chr12 129709559 129709754 + 2 NA intron (NM_133448, intron 1 of 8) L1MEg|LINE|L1 194369 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 267-214 chr2 172960800 172960967 + 2 NA intron (NM_001282899, intron 4 of 27) intron (NM_001282899, intron 4 of 27) 32678 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 315-238 chr2 75259770 75259953 + 2 NA Intergenic L1MB7|LINE|L1 -60341 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 310-128 chr14 41937709 41937884 + 2 NA Intergenic Intergenic 330940 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 211-188 chr3 69194455 69194661 + 2 NA intron (NM_015123, intron 16 of 22) intron (NM_015123, intron 16 of 22) -71963 NM_198271 56203 Hs.350621 NM_198271 ENSG00000163380 LMOD3 NEM10 leiomodin 3 protein-coding 216-292 chr5 154690075 154690251 + 2 NA intron (NM_001367715, intron 1 of 17) intron (NM_001367715, intron 1 of 17) 4387 NR_031638 100302284 NR_031638 ENSG00000221552 MIR1303 MIRN1303|hsa-mir-1303 microRNA 1303 ncRNA 283-252 chr2 198824061 198824227 + 2 NA Intergenic Intergenic -449047 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 266-254 chr3 89691412 89691631 + 2 NA Intergenic Intergenic 583900 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 325-57 chr10 39104771 39105020 + 2 NA Intergenic ALR/Alpha|Satellite|centr 408299 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 199-15 chr1 227668239 227668379 + 2 NA intron (NR_102302, intron 5 of 5) Charlie13a|DNA|hAT-Charlie 29398 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 146-77 chr6 66365853 66365953 + 2 NA Intergenic L1MD|LINE|L1 578024 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 229-296 chr5 36628910 36629082 + 2 NA intron (NM_001289939, intron 2 of 8) intron (NM_001289939, intron 2 of 8) 22390 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 253-242 chr22 45143196 45143387 + 2 NA intron (NR_038956, intron 1 of 2) AluJr|SINE|Alu 9293 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 334-382 chr4 81141379 81141561 + 2 NA intron (NM_001282485, intron 11 of 18) MER3|DNA|hAT-Charlie 12687 NM_001282482 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 338-32 chr1 219002946 219003132 + 2 NA intron (NR_031644, intron 6 of 6) L1MEc|LINE|L1 -84528 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 174-103 chr4 64109006 64109143 + 2 NA Intergenic Intergenic 300376 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 378-367 chr6 45297274 45297555 + 2 NA intron (NM_001350325, intron 2 of 10) MamRep137|DNA|TcMar-Tigger -30903 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 253-418 chr8 127716645 127716874 + 2 NA intron (NR_117102, intron 1 of 3) intron (NR_117102, intron 1 of 3) 17208 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 227-49 chr10 85118901 85119070 + 2 NA Intergenic Intergenic 79920 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 454-146 chr2 49982105 49982431 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -8065 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 188-75 chr17 49867251 49867429 + 2 NA Intergenic Intergenic -19323 NM_001077505 255061 Hs.652130 NM_170685 ENSG00000176358 TAC4 EK|HK-1|HK1|PPT-C tachykinin 4 protein-coding 201-101 chr17 53125874 53126042 + 2 NA Intergenic Intergenic 140453 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 306-61 chr10 83577429 83577610 + 2 NA Intergenic L1PA16|LINE|L1 99570 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 491-3 chr1 90334747 90335118 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -322818 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 145-46 chr2 27747420 27747515 + 2 NA Intergenic L1MA7|LINE|L1 -24250 NM_145330 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 642-90 chr5 12617183 12617799 + 2 NA intron (NR_033383, intron 2 of 3) L1PB3|LINE|L1 42634 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 309-51 chr10 51272725 51272978 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -26722 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 363-294 chr3 109455586 109455894 + 2 NA intron (NR_109841, intron 2 of 4) intron (NR_109841, intron 2 of 4) 45750 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 537-22 chr10 31625878 31626317 + 2 NA Intergenic L1PB4|LINE|L1 -226342 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 630-53 chr2 66401003 66401568 + 2 NA Intergenic L1MC3|LINE|L1 17979 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 398-239 chr4 42248671 42248996 + 2 NA Intergenic Intergenic -96178 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 329-413 chr4 81121549 81121826 + 2 NA intron (NM_006259, intron 14 of 18) L1MC1|LINE|L1 32470 NM_001282482 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 337-575 chr9 33184873 33185123 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 17139 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 408-226 chr4 36883458 36883791 + 2 NA Intergenic L2c|LINE|L2 -118155 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 272-252 chr22 49139154 49139407 + 2 NA Intergenic (GATA)n|Simple_repeat|Simple_repeat 272510 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 321-335 chr20 45512953 45513176 + 2 NA intron (NM_006652, intron 1 of 1) MIRb|SINE|MIR 2558 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 241-390 chr8 50932239 50932390 + 2 NA Intergenic L1ME1|LINE|L1 768183 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 400-163 chr2 60243235 60243623 + 2 NA Intergenic L1ME1|LINE|L1 139607 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 445-288 chr9 119414044 119414425 + 2 NA Intergenic MIRc|SINE|MIR -44799 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 415-124 chr2 53388845 53389174 + 2 NA Intergenic Intergenic -378774 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 528-66 chr12 97773835 97774345 + 2 NA Intergenic HAL1|LINE|L1 -17573 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 387-375 chr8 133707004 133707229 + 2 NA Intergenic Intergenic -23050 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 657-91 chr7 54094139 54094541 + 2 NA Intergenic L1M5|LINE|L1 -236357 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 131-46 chr20 53173953 53174027 + 2 NA intron (NM_173485, intron 1 of 2) (ACAC)n|Simple_repeat|Simple_repeat -11293 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 414-334 chr8 122234943 122235255 + 2 NA Intergenic Intergenic 333545 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 362-170 chr15 79730741 79731055 + 2 NA Intergenic L1ME1|LINE|L1 166099 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 358-425 chr7 10597498 10597806 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -105024 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 547-102 chr2 106953798 106954163 + 2 NA Intergenic Intergenic -66871 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 293-165 chr18 44947124 44947400 + 2 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 22904 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 562-100 chr2 27956227 27956577 + 2 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -39965 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 359-524 chrX 82716143 82716450 + 2 NA Intergenic Intergenic -791994 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 445-108 chr19 36657141 36657522 + 2 NA intron (NM_001322827, intron 3 of 4) AluSq2|SINE|Alu 9506 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 439-18 chr1 233471689 233472032 + 2 NA Intergenic MER41A|LTR|ERV1 -142246 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 220-360 chr8 47042760 47042971 + 2 NA Intergenic L1MA4A|LINE|L1 -146442 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 344-56 chr10 80355774 80355952 + 2 NA promoter-TSS (NM_001270041) promoter-TSS (NM_001270041) 892 NM_001370157 143241 Hs.407751 NM_138812 ENSG00000170788 DYDC1 DPY30D1 DPY30 domain containing 1 protein-coding 313-353 chr3 100321099 100321317 + 2 NA intron (NM_001199198, intron 18 of 18) intron (NM_001199198, intron 18 of 18) -13549 NM_020202 56954 Hs.439152 NM_020202 ENSG00000114021 NIT2 HEL-S-8a nitrilase family member 2 protein-coding 335-375 chr4 12713399 12713596 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 490046 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 349-9 chr1 38348426 38348677 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -126645 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 223-192 chr21 30993583 30993766 + 2 NA Intergenic Intergenic 44802 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 209-236 chr4 126903142 126903323 + 2 NA Intergenic Intergenic -729725 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 281-75 chr11 109789890 109790046 + 2 NA Intergenic Intergenic -303424 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 388-67 chr11 76249142 76249353 + 2 NA Intergenic Intergenic -42745 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 296-296 chr3 63505216 63505380 + 2 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 44753 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 392-357 chrX 41843822 41844157 + 2 NA intron (NM_003688, intron 2 of 26) L1MB8|LINE|L1 79045 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 346-258 chr2 142399017 142399292 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -267453 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 539-187 chr6 162896347 162896772 + 2 NA intron (NM_001080379, intron 2 of 4) Arthur1|DNA|hAT-Tip100 157602 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 598-108 chr5 57746972 57747388 + 2 NA Intergenic Intergenic 96520 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 594-89 chr22 34166350 34166847 + 2 NA Intergenic L1MA9|LINE|L1 -243710 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 165-62 chr2 221919436 221919536 + 2 NA Intergenic Intergenic -345284 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 457-226 chr7 26628716 26629111 + 2 NA Intergenic Intergenic -8958 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 496-114 chr17 71509075 71509365 + 2 NA Intergenic LTR16C|LTR|ERVL -307041 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 439-76 chr12 108017037 108017315 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -112112 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 220-54 chr10 77678152 77678299 + 2 NA Intergenic Intergenic -40417 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 491-210 chr5 57063380 57063757 + 2 NA Intergenic AluSx|SINE|Alu -110380 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 447-25 chr10 55823082 55823363 + 2 NA Intergenic HERVL74-int|LTR|ERVL -195280 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 147-65 chr4 22754609 22754710 + 2 NA intron (NR_102357, intron 4 of 4) intron (NR_102357, intron 4 of 4) 40570 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 250-125 chr14 67811613 67811835 + 2 NA intron (NM_015346, intron 3 of 41) intron (NM_015346, intron 3 of 41) 4866 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 188-16 chr10 36112458 36112611 + 2 NA Intergenic L2a|LINE|L2 334232 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 342-74 chr10 82386516 82386697 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -153686 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 321-120 chr12 10101816 10102028 + 2 NA Intergenic L1PB3|LINE|L1 -2937 NM_001297748 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 338-90 chr10 130063352 130063611 + 2 NA TTS (NR_034125) TTS (NR_034125) -42528 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 312-486 chr7 53263494 53263670 + 2 NA Intergenic L1ME3B|LINE|L1 227949 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 698-85 chr8 128170458 128171044 + 2 NA Intergenic MIR|SINE|MIR 20635 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 394-76 chr12 18301293 18301583 + 2 NA intron (NM_001288774, intron 5 of 32) L1MA4A|LINE|L1 39898 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 547-56 chr12 129375411 129375794 + 2 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 167001 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 218-28 chr10 81183050 81183255 + 2 NA Intergenic Intergenic 533355 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 309-589 chrX 117582652 117582834 + 2 NA Intergenic L1PB2|LINE|L1 390995 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 377-259 chr21 45812871 45813213 + 2 NA intron (NM_001348243, intron 3 of 15) L1M4a1|LINE|L1 23377 NR_038876 100129027 Hs.689591 NR_038876 ENSG00000205424 LOC100129027 - uncharacterized LOC100129027 ncRNA 487-281 chr8 36824776 36825082 + 2 NA intron (NM_001031836, intron 10 of 26) L1ME3B|LINE|L1 40555 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 351-114 chr13 102746773 102747003 + 2 NA exon (NM_001146197, exon 4 of 4) exon (NM_001146197, exon 4 of 4) 12184 NM_001146197 643677 Hs.368382 NM_001146197 ENSG00000175820 CCDC168 C13orf40 coiled-coil domain containing 168 protein-coding 322-422 chr5 43846739 43846970 + 2 NA Intergenic L2c|LINE|L2 -243624 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 321-110 chr11 112994348 112994540 + 2 NA intron (NM_181351, intron 1 of 18) HAL1|LINE|L1 -30984 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 354-274 chr22 19267202 19267524 + 2 NA intron (NM_007098, intron 2 of 32) L1PA8|LINE|L1 24356 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 204-199 chr3 94407618 94407725 + 2 NA Intergenic Intergenic 344610 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 335-256 chr2 107521711 107521981 + 2 NA Intergenic L1M5|LINE|L1 -7573 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 232-18 chr1 184221090 184221243 + 2 NA Intergenic Intergenic -165863 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 187-123 chr3 190657557 190657681 + 2 NA 3' UTR (NM_001167931, exon 12 of 12) 3' UTR (NM_001167931, exon 12 of 12) 143534 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 551-47 chr13 80164686 80165056 + 2 NA Intergenic Intergenic 153794 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 683-21 chr15 50249290 50249808 + 2 NA intron (NM_002112, intron 9 of 11) intron (NM_002112, intron 9 of 11) 16177 NM_002112 3067 Hs.1481 NM_002112 ENSG00000140287 HDC - histidine decarboxylase protein-coding 242-44 chr10 80626759 80626924 + 2 NA intron (NM_207372, intron 6 of 6) MIRc|SINE|MIR -22956 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 547-113 chr2 170053101 170053496 + 2 NA intron (NM_172070, intron 32 of 38) MER68|LTR|ERVL -124849 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 567-37 chr11 99847023 99847382 + 2 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 291057 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 403-40 chr10 129006684 129006934 + 2 NA Intergenic HAL1|LINE|L1 93976 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 405-140 chr2 72403277 72403582 + 2 NA intron (NM_001321729, intron 18 of 22) AluJr|SINE|Alu -255567 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 435-112 chr19 28585811 28586171 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -20697 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 462-20 chr10 6979399 6979841 + 2 NA Intergenic Kanga1|DNA|TcMar-Tc2 200022 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 361-424 chr7 116472742 116473064 + 2 NA Intergenic L1MEc|LINE|L1 -26835 NM_001206747 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 311-43 chr10 20255163 20255444 + 2 NA intron (NM_032812, intron 13 of 13) intron (NM_032812, intron 13 of 13) -296667 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 461-260 chr8 59064456 59064843 + 2 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 54498 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 520-142 chr2 65732675 65733042 + 2 NA Intergenic Intergenic -300259 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 450-127 chr19 34713222 34713516 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -20874 NM_001145665 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 486-208 chr3 119426842 119427317 + 2 NA Intergenic L1MA7|LINE|L1 36536 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 313-507 chr7 89703669 89703942 + 2 NA Intergenic Intergenic -415595 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 366-267 chr22 47414043 47414317 + 2 NA Intergenic AluJb|SINE|Alu 68609 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 504-138 chr2 156112852 156113347 + 2 NA intron (NR_110250, intron 1 of 3) L1MB8|LINE|L1 141832 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 253-236 chr21 32068056 32068215 + 2 NA Intergenic Intergenic 18160 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 306-413 chr5 157390898 157391145 + 2 NA intron (NM_001037333, intron 30 of 30) L2c|LINE|L2 -45344 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 377-154 chr17 15033841 15034199 + 2 NA intron (NR_135638, intron 1 of 1) intron (NR_135638, intron 1 of 1) 3045 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 472-52 chr12 14522255 14522568 + 2 NA intron (NM_024829, intron 6 of 10) L1MA6|LINE|L1 -45321 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 358-153 chr16 83714919 83715238 + 2 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 88898 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 500-151 chr2 140382111 140382442 + 2 NA intron (NM_018557, intron 67 of 90) intron (NM_018557, intron 67 of 90) 204409 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 251-56 chr11 112734189 112734402 + 2 NA Intergenic Intergenic -178493 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 168-51 chr2 36194038 36194159 + 2 NA Intergenic MIR3|SINE|MIR 161472 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 513-50 chr11 92866723 92867221 + 2 NA exon (NM_001367949, exon 22 of 28) exon (NM_001367949, exon 22 of 28) 48656 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 299-14 chr1 82534089 82534247 + 2 NA Intergenic L1PA11|LINE|L1 -369015 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 612-125 chr7 3120951 3121346 + 2 NA Intergenic L1MB3|LINE|L1 37425 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 195-249 chr9 27083370 27083505 + 2 NA Intergenic L2a|LINE|L2 -25704 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 267-391 chr7 49445284 49445523 + 2 NA Intergenic L1MB7|LINE|L1 -328235 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 249-153 chr17 67508730 67508921 + 2 NA intron (NM_181671, intron 1 of 9) L1MB3|LINE|L1 -37240 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 196-20 chr1 179506015 179506182 + 2 NA intron (NM_144696, intron 20 of 25) intron (NM_144696, intron 20 of 25) 69850 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 243-14 chr1 93727460 93727641 + 2 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -45713 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 306-452 chr7 274915 275092 + 2 NA Intergenic L1M4|LINE|L1 82432 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 389-248 chr3 159912985 159913228 + 2 NA TTS (NR_108088) TTS (NR_108088) 73245 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 299-264 chr21 30164097 30164331 + 2 NA Intergenic Intergenic 2591 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 269-424 chr9 35989370 35989570 + 2 NA Intergenic L1M6|LINE|L1 -31316 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 403-146 chr19 42591324 42591572 + 2 NA intron (NM_001816, intron 2 of 5) intron (NM_001816, intron 2 of 5) 3476 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 342-88 chr11 22386654 22386837 + 2 NA Intergenic Intergenic 48364 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 490-283 chr8 20982092 20982459 + 2 NA intron (NR_033894, intron 1 of 4) intron (NR_033894, intron 1 of 4) 8289 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 246-207 chr2 153536613 153536824 + 2 NA Intergenic L2b|LINE|L2 -57956 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 300-158 chr17 73611137 73611300 + 2 NA intron (NM_001144952, intron 1 of 44) (TC)n|Simple_repeat|Simple_repeat 33227 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 331-105 chr12 4724198 4724440 + 2 NA intron (NM_017417, intron 1 of 10) intron (NM_017417, intron 1 of 10) 3919 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 603-15 chr10 80655925 80656382 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 6356 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 309-292 chr2 230523891 230524154 + 2 NA intron (NM_001080391, intron 24 of 28) LOR1-int|LTR|ERV1 107266 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 230-28 chr1 224935792 224935957 + 2 NA intron (NM_001349912, intron 1 of 5) L1MA4|LINE|L1 6199 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 360-127 chr14 72320064 72320405 + 2 NA intron (NM_001370288, intron 2 of 16) L1M7|LINE|L1 -196586 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 291-158 chr16 9346144 9346318 + 2 NA Intergenic Intergenic -9357 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 246-393 chr8 65094092 65094287 + 2 NA Intergenic ERVL47-int|LTR|ERVL 86151 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 411-199 chr4 28597926 28598285 + 2 NA Intergenic Intergenic -221477 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 507-98 chr16 55129831 55130087 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -194600 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 300-120 chr14 82077171 82077434 + 2 NA Intergenic Intergenic -334164 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 290-124 chr13 111546716 111546874 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -49214 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 492-179 chr3 112521019 112521463 + 2 NA Intergenic L1MA5|LINE|L1 -21769 NM_001085357 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 210-199 chr4 70063348 70063508 + 2 NA Intergenic MER4B-int|LTR|ERV1 -3958 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 384-333 chr6 162708514 162708731 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -18510 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 381-165 chr19 36621771 36621973 + 2 NA intron (NM_001256838, intron 4 of 4) intron (NM_001256838, intron 4 of 4) 16559 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 503-233 chr5 41170830 41171153 + 2 NA intron (NM_000065, intron 9 of 17) intron (NM_000065, intron 9 of 17) 42541 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 227-96 chr13 60889048 60889182 + 2 NA Intergenic Intergenic 216160 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 556-2 chr1 37098433 37098852 + 2 NA Intergenic Intergenic -62921 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 427-185 chr4 74459758 74460075 + 2 NA Intergenic L1MA5A|LINE|L1 14780 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 474-47 chr11 48269191 48269606 + 2 NA Intergenic L1M5|LINE|L1 5537 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 366-119 chr13 93348410 93348770 + 2 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 121783 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 327-364 chr4 66678418 66678602 + 2 NA Intergenic L1PB4|LINE|L1 401686 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 314-147 chr13 62593419 62593599 + 2 NA Intergenic Intergenic 203183 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 606-164 chr8 101370887 101371295 + 2 NA Intergenic Intergenic 2198 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 294-184 chr19 22101848 22102024 + 2 NA Intergenic Intergenic 49452 NM_001316997 113835 Hs.283900 NM_033468 ENSG00000197134 ZNF257 BMZF-4|BMZF4 zinc finger protein 257 protein-coding 296-420 chr6 151844132 151844320 + 2 NA intron (NM_001291230, intron 3 of 8) intron (NM_001291230, intron 3 of 8) 35119 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 195-250 chr9 28132006 28132160 + 2 NA intron (NM_152570, intron 5 of 6) L4_C_Mam|LINE|RTE-X -558217 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 365-292 chr4 70042326 70042537 + 2 NA Intergenic MER4B-int|LTR|ERV1 -8007 NM_002159 3346 Hs.250959 NM_002159 ENSG00000126550 HTN1 HIS1 histatin 1 protein-coding 402-65 chr12 56148572 56148876 + 2 NA Intergenic AluSz6|SINE|Alu -3863 NM_001199629 140465 Hs.632731 NM_002475 ENSG00000196465 MYL6B MLC1SA myosin light chain 6B protein-coding 430-109 chr16 89789527 89789782 + 2 NA intron (NM_000135, intron 14 of 42) AluJo|SINE|Alu 26993 NM_001018112 2175 Hs.744083 NM_000135 ENSG00000187741 FANCA FA|FA-H|FA1|FAA|FACA|FAH|FANCH FA complementation group A protein-coding 555-42 chr12 40537261 40537667 + 2 NA intron (NM_173600, intron 132 of 173) intron (NM_173600, intron 132 of 173) 144070 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 391-352 chr8 83653840 83654128 + 2 NA Intergenic Intergenic 250226 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 273-416 chr7 19929043 19929252 + 2 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) -155530 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 224-177 chr20 49843171 49843365 + 2 NA intron (NR_048538, intron 4 of 13) intron (NR_048538, intron 4 of 13) -20591 NR_162136 113219455 NR_162136 MIR12122 - microRNA 12122 ncRNA 226-194 chr20 5162897 5163085 + 2 NA intron (NM_003818, intron 1 of 12) intron (NM_003818, intron 1 of 12) 35983 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 425-269 chr6 153808427 153808711 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -201927 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 472-81 chr14 39433323 39433712 + 2 NA Intergenic LTR9B|LTR|ERV1 -1017 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 297-243 chr2 190512899 190513102 + 2 NA intron (NR_136298, intron 7 of 8) intron (NR_136298, intron 7 of 8) 21722 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 343-230 chr2 39453770 39453954 + 2 NA non-coding (NR_037875, exon 2 of 6) non-coding (NR_037875, exon 2 of 6) 16446 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 285-158 chr18 3123251 3123521 + 2 NA intron (NM_019856, intron 18 of 36) L1ME3B|LINE|L1 96582 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 316-322 chr20 47108517 47108693 + 2 NA intron (NM_172110, intron 9 of 13) AluJo|SINE|Alu -58362 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 128-39 chr3 4997319 4997392 + 2 NA Intergenic Intergenic -17394 NR_125916 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 391-379 chr9 78945959 78946288 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 199543 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 382-231 chr2 228923999 228924231 + 2 NA Intergenic L2a|LINE|L2 307977 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 306-320 chr3 104027086 104027286 + 2 NA Intergenic L1MC3|LINE|L1 -503070 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 317-233 chr2 88817685 88817950 + 2 NA Intergenic Intergenic 5447 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 290-99 chr12 15458128 15458395 + 2 NA intron (NM_030667, intron 1 of 26) L1MB1|LINE|L1 -88350 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 325-576 chr9 82229583 82229835 + 2 NA Intergenic HAL1|LINE|L1 240937 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 353-106 chr12 28913888 28914083 + 2 NA Intergenic L1M2|LINE|L1 -235293 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 488-115 chr19 27926431 27926810 + 2 NA intron (NR_146733, intron 2 of 6) intron (NR_146733, intron 2 of 6) -132680 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 212-298 chr7 29833497 29833634 + 2 NA intron (NM_001080529, intron 1 of 8) intron (NM_001080529, intron 1 of 8) 27011 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 251-246 chr3 119589934 119590101 + 2 NA TTS (NM_001291950) TTS (NM_001291950) -7831 NM_001206961 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 305-169 chr15 46040720 46040966 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 335648 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 217-284 chr5 9694784 9694977 + 2 NA intron (NR_027112, intron 9 of 12) intron (NR_027112, intron 9 of 12) -64529 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 246-428 chr9 12195785 12195986 + 2 NA Intergenic Intergenic -497500 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 446-27 chr1 216515495 216515830 + 2 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -92214 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 553-142 chr21 14692282 14692753 + 2 NA Intergenic Intergenic -49410 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 355-438 chr6 113815052 113815365 + 2 NA Intergenic Intergenic -42137 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 469-164 chr21 25414514 25414881 + 2 NA intron (NR_024027, intron 4 of 4) MLT1A0|LTR|ERVL-MaLR 17004 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 297-34 chr1 236968121 236968322 + 2 NA Intergenic Intergenic 36220 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 349-296 chr20 55015393 55015690 + 2 NA Intergenic Intergenic -407502 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 416-157 chr19 51570215 51570599 + 2 NA promoter-TSS (NR_136208) promoter-TSS (NR_136208) -876 NM_007147 7728 Hs.119014 NM_007147 ENSG00000105497 ZNF175 OTK18 zinc finger protein 175 protein-coding 786-26 chr17 73128795 73129383 + 2 NA Intergenic L1MB5|LINE|L1 -35921 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 390-239 chr3 64713110 64713400 + 2 NA intron (NR_038264, intron 1 of 5) MLT1B|LTR|ERVL-MaLR -25255 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 544-68 chr14 79634335 79634859 + 2 NA intron (NR_073547, intron 15 of 20) MIRb|SINE|MIR 355217 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 268-430 chr9 23839105 23839308 + 2 NA intron (NM_001351456, intron 2 of 8) intron (NM_001351456, intron 2 of 8) 11395 NM_001351456 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 286-269 chr3 19907254 19907437 + 2 NA intron (NM_001330688, intron 7 of 14) intron (NM_001330688, intron 7 of 14) 26872 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 269-420 chr9 27479542 27479736 + 2 NA intron (NM_024761, intron 1 of 3) L1MEd|LINE|L1 -44675 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 683-44 chr21 20826292 20826685 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -23380 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 244-57 chr11 79405164 79405293 + 2 NA intron (NM_001098816, intron 1 of 33) MIRb|SINE|MIR -3119 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 340-21 chr1 115869958 115870284 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -28995 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 301-37 chr10 37834997 37835193 + 2 NA intron (NR_147992, intron 5 of 8) intron (NR_147992, intron 5 of 8) 22515 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 423-61 chr12 91484293 91484601 + 2 NA Intergenic L1M5|LINE|L1 -301630 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 784-26 chr2 5840893 5841438 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -28569 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 207-62 chr12 4455552 4455672 + 2 NA Intergenic L1MC1|LINE|L1 -9998 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 335-393 chr4 104427056 104427367 + 2 NA Intergenic Intergenic -63754 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 317-382 chr5 36092344 36092567 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -25573 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 379-211 chr3 39943900 39944100 + 2 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) 134340 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 131-76 chr8 86224802 86224880 + 2 NA intron (NM_138817, intron 1 of 3) intron (NM_138817, intron 1 of 3) 5540 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 502-22 chr1 213731196 213731499 + 2 NA Intergenic L1PA13|LINE|L1 -193402 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 287-246 chr3 41435352 41435617 + 2 NA intron (NR_136342, intron 32 of 34) intron (NR_136342, intron 32 of 34) 235979 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 276-332 chr4 57979140 57979392 + 2 NA Intergenic L2a|LINE|L2 553394 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 365-409 chr8 122967940 122968199 + 2 NA intron (NM_001362797, intron 4 of 4) intron (NM_001362797, intron 4 of 4) 57703 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 264-106 chr13 37261444 37261632 + 2 NA Intergenic Intergenic -155874 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 397-190 chr21 17992046 17992286 + 2 NA intron (NM_001204177, intron 1 of 4) L1MA4|LINE|L1 74826 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 482-144 chr20 32609688 32610053 + 2 NA TTS (NR_034152) TTS (NR_034152) 22391 NR_034152 149950 Hs.516980 NM_001010976 ENSG00000204393 NOL4L-DT - NOL4L divergent transcript ncRNA 628-108 chr5 150908677 150909133 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -3922 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 628-133 chr8 121184584 121185132 + 2 NA Intergenic Intergenic -372812 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 204-196 chr3 71963569 71963690 + 2 NA Intergenic MER34A|LTR|ERV1 136826 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 238-125 chr16 27630141 27630322 + 2 NA intron (NM_015202, intron 4 of 27) MIRb|SINE|MIR 80087 NM_015202 23247 Hs.460459 NM_015202 ENSG00000047578 KIAA0556 JBTS26 KIAA0556 protein-coding 273-397 chr6 125712027 125712209 + 2 NA intron (NR_038906, intron 3 of 3) L1MEc|LINE|L1 -37514 NM_012259 23493 Hs.144287 NM_012259 ENSG00000135547 HEY2 CHF1|GRIDLOCK|GRL|HERP1|HESR2|HRT2|bHLHb32 hes related family bHLH transcription factor with YRPW motif 2 protein-coding 358-302 chr3 101288673 101288986 + 2 NA intron (NM_016247, intron 4 of 18) intron (NM_016247, intron 4 of 18) 31746 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 416-16 chr1 182043520 182043793 + 2 NA Intergenic LTR16E1|LTR|ERVL 18056 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 333-433 chr5 17262394 17262638 + 2 NA intron (NM_006317, intron 1 of 1) MIR|SINE|MIR 44885 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 366-206 chr2 95147084 95147351 + 2 NA 3' UTR (NM_032788, exon 5 of 5) 3' UTR (NM_032788, exon 5 of 5) 12368 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 613-47 chr18 10261263 10261758 + 2 NA Intergenic Intergenic 152860 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 208-267 chr8 117568827 117569005 + 2 NA Intergenic L1MC3|LINE|L1 48203 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 611-150 chr8 119482185 119482685 + 2 NA Intergenic L1MC4a|LINE|L1 65989 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 438-60 chr11 115822889 115823212 + 2 NA Intergenic L1M5|LINE|L1 -62850 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 385-373 chr8 9181034 9181344 + 2 NA Intergenic Intergenic -7810 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 174-118 chr5 153040533 153040675 + 2 NA Intergenic L1PA8A|LINE|L1 -68255 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 239-3 chr1 50201631 50201862 + 2 NA 3' UTR (NM_001324214, exon 8 of 8) 3' UTR (NM_001324214, exon 8 of 8) 91913 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 202-59 chr13 97185198 97185355 + 2 NA Intergenic Intergenic -5654 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 376-304 chr5 3969651 3969864 + 2 NA Intergenic L1MCb|LINE|L1 373925 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 334-147 chr14 57935506 57935706 + 2 NA Intergenic Intergenic -69514 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 199-97 chr2 7377653 7377824 + 2 NA Intergenic Intergenic -43523 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 250-354 chr5 102388283 102388427 + 2 NA intron (NM_173488, intron 12 of 13) AluJb|SINE|Alu -92071 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 226-84 chr13 111868030 111868187 + 2 NA Intergenic L1MEd|LINE|L1 -25270 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 291-212 chr2 57614841 57615085 + 2 NA Intergenic Intergenic -292688 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 236-232 chr3 101346768 101346936 + 2 NA intron (NM_020654, intron 13 of 23) L1PB1|LINE|L1 -26277 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 230-13 chr1 94356969 94357156 + 2 NA Intergenic Intergenic -61315 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 802-41 chr3 31493029 31493700 + 2 NA Intergenic Intergenic -39561 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 434-114 chr17 77685104 77685452 + 2 NA Intergenic Intergenic 43281 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 169-144 chr8 140116454 140116617 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -16000 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 348-223 chr2 60276480 60276738 + 2 NA Intergenic Intergenic 106427 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 177-135 chr5 148721743 148721885 + 2 NA Intergenic L1ME4a|LINE|L1 -67287 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 319-475 chr6 124491255 124491500 + 2 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 208372 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 499-146 chr20 22468114 22468537 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -47682 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 479-199 chr5 113751120 113751422 + 2 NA Intergenic Intergenic 237577 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 344-215 chr19 52614841 52615019 + 2 NA intron (NM_001277946, intron 3 of 3) intron (NM_001277946, intron 3 of 3) 18246 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 243-218 chr2 100844646 100844813 + 2 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 24590 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 138-61 chr4 187605325 187605442 + 2 NA intron (NR_110436, intron 2 of 2) MER67A|LTR|ERV1 67258 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 372-50 chr10 70607507 70607850 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -4890 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 410-37 chr10 67446103 67446337 + 2 NA intron (NM_001127384, intron 5 of 17) L2a|LINE|L2 -42810 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 456-170 chr2 183077360 183077747 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -1194 NR_135688 142679 Hs.132237 NM_080876 ENSG00000162999 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 430-235 chr5 19829674 19830004 + 2 NA intron (NM_001349559, intron 3 of 12) L1PA15|LINE|L1 56433 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 349-52 chr10 34102826 34103159 + 2 NA Intergenic Intergenic -330312 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 401-312 chr8 52398447 52398753 + 2 NA intron (NR_148195, intron 2 of 3) L1MA9|LINE|L1 11156 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 553-220 chr7 71595120 71595610 + 2 NA intron (NM_022479, intron 6 of 10) AluJr|SINE|Alu -287595 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 204-241 chr5 148786132 148786326 + 2 NA Intergenic Intergenic -40364 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 479-229 chr7 38199230 38199562 + 2 NA intron (NM_001363344, intron 2 of 8) L2b|LINE|L2 21151 NM_032016 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 267-439 chr8 138380909 138381078 + 2 NA intron (NM_001362965, intron 1 of 19) (A)n|Simple_repeat|Simple_repeat 116268 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 180-71 chr18 69911888 69912004 + 2 NA intron (NM_001303619, intron 1 of 4) intron (NM_001303619, intron 1 of 4) 35927 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 356-38 chr10 6323931 6324225 + 2 NA Intergenic L1MB3|LINE|L1 -2466 NR_040079 399715 NR_040079 ENSG00000215244 LINC02649 - long intergenic non-protein coding RNA 2649 ncRNA 288-462 chr8 138009537 138009688 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 73933 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 353-456 chr6 66550689 66550996 + 2 NA Intergenic Intergenic 762963 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 279-236 chr21 31776156 31776309 + 2 NA Intergenic MIR|SINE|MIR -44114 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 496-154 chr2 228467223 228467704 + 2 NA Intergenic Intergenic 143932 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 245-225 chr3 15833267 15833470 + 2 NA intron (NM_001349279, intron 1 of 28) MLT2A1|LTR|ERVL 26446 NM_001349279 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 371-328 chr5 167179495 167179756 + 2 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -11224 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 325-63 chr10 59786351 59786582 + 2 NA Intergenic Intergenic -33011 NM_001304732 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 356-107 chr12 34557419 34557630 + 2 NA Intergenic ALR/Alpha|Satellite|centr 535028 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 190-177 chr8 102516167 102516287 + 2 NA Intergenic L1ME3A|LINE|L1 -35362 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 297-74 chr11 44044525 44044704 + 2 NA Intergenic Intergenic -3367 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 227-87 chr12 93521258 93521448 + 2 NA Intergenic Intergenic -48616 NM_003877 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 527-177 chr3 100014332 100014802 + 2 NA intron (NM_001042459, intron 1 of 4) L1MA9|LINE|L1 -50169 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 311-557 chrX 66305321 66305583 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 137702 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 276-389 chr5 178951203 178951389 + 2 NA intron (NM_001178089, intron 4 of 4) L1ME3C|LINE|L1 10098 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 262-58 chr10 84816499 84816677 + 2 NA Intergenic L1PA15|LINE|L1 382317 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 302-143 chr15 53039720 53039984 + 2 NA Intergenic MIR3|SINE|MIR -76513 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 212-250 chr5 2960004 2960211 + 2 NA Intergenic Intergenic 42253 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 635-4 chr1 76207050 76207478 + 2 NA intron (NM_001349108, intron 1 of 3) MIR|SINE|MIR 132518 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 330-484 chr7 21661223 21661446 + 2 NA intron (NM_001277115, intron 30 of 81) L1MEd|LINE|L1 118295 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 487-290 chr8 87868493 87868810 + 2 NA Intergenic Intergenic 5364 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 325-259 chr2 41444535 41444856 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -432860 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 494-24 chr10 56658486 56658812 + 2 NA Intergenic L1M1|LINE|L1 -297376 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 337-595 chrX 47776311 47776593 + 2 NA Intergenic LTR16A1|LTR|ERVL -60450 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 382-303 chr4 92977270 92977556 + 2 NA intron (NM_001286838, intron 2 of 14) L2a|LINE|L2 673014 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 381-237 chr22 49421210 49421447 + 2 NA intron (NR_110522, intron 1 of 2) L1MEd|LINE|L1 122138 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 405-325 chr8 89080402 89080744 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie 677138 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 356-82 chr11 50507425 50507725 + 2 NA Intergenic ALR/Alpha|Satellite|centr 98428 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 318-165 chr14 31753947 31754177 + 2 NA intron (NM_001201574, intron 1 of 5) L1MA8|LINE|L1 39493 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 347-355 chr4 112490654 112490972 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -24566 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 381-240 chr3 3549904 3550136 + 2 NA Intergenic L1M4c|LINE|L1 -249411 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 252-287 chr3 195602316 195602552 + 2 NA Intergenic Intergenic -18494 NM_001647 347 Hs.522555 NM_001647 ENSG00000189058 APOD - apolipoprotein D protein-coding 389-272 chr4 149235791 149236079 + 2 NA intron (NR_125887, intron 9 of 12) L1ME2|LINE|L1 81640 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 305-107 chr11 111419210 111419381 + 2 NA Intergenic Intergenic -1109 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 571-191 chrX 4345558 4345943 + 2 NA Intergenic Intergenic 287822 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 345-326 chr21 30533611 30533922 + 2 NA Intergenic Intergenic 8098 NM_001303120 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 208-135 chr2 179436893 179437065 + 2 NA Intergenic L1ME4a|LINE|L1 125609 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 311-549 chr9 109513039 109513323 + 2 NA Intergenic AluJr|SINE|Alu -1636 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 204-107 chr15 99093080 99093276 + 2 NA Intergenic Intergenic -11902 NM_145728 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 131-14 chr10 112741005 112741102 + 2 NA intron (NM_001365713, intron 8 of 8) L1MB7|LINE|L1 -82443 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 165-7 chr10 29807149 29807282 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -70279 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 324-459 chr6 46255477 46255700 + 2 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) -20736 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 332-361 chr4 7552885 7553084 + 2 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) 92956 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 475-282 chr8 85149413 85149823 + 2 NA Intergenic L1PA13|LINE|L1 27423 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 367-218 chr2 123851889 123852155 + 2 NA Intergenic Intergenic 173152 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 347-94 chr12 61684168 61684471 + 2 NA Intergenic L1PB|LINE|L1 508520 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 177-25 chr11 8007698 8007858 + 2 NA Intergenic Intergenic 8731 NR_125366 103581031 Hs.249366 NR_125366 ENSG00000255420 CASC23 LINC01464 cancer susceptibility 23 ncRNA 776-56 chr8 68972416 68973025 + 2 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 131470 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 246-319 chr5 27463934 27464145 + 2 NA Intergenic MER21B|LTR|ERVL -8253 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 246-265 chr3 104225690 104225902 + 2 NA Intergenic Intergenic -701680 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 309-38 chr10 15313704 15313877 + 2 NA intron (NM_001010924, intron 1 of 7) intron (NM_001010924, intron 1 of 7) 57499 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 561-61 chr13 89598655 89599153 + 2 NA Intergenic Intergenic -34491 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 426-18 chr1 241281018 241281368 + 2 NA intron (NM_001282778, intron 2 of 16) Tigger2b_Pri|DNA|TcMar-Tigger 74633 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 275-93 chr13 65540501 65540730 + 2 NA Intergenic L1MEg|LINE|L1 -325432 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 148-71 chr5 32904755 32904859 + 2 NA Intergenic Intergenic -42636 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 520-2 chr1 18995874 18996240 + 2 NA Intergenic Intergenic -39381 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 348-526 chr8 105158858 105159171 + 2 NA Intergenic MIRb|SINE|MIR -159424 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 305-289 chr2 190455013 190455280 + 2 NA intron (NM_017694, intron 3 of 7) MIR|SINE|MIR 46791 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 360-398 chr6 36494222 36494546 + 2 NA 3' UTR (NM_001305102, exon 14 of 14) 3' UTR (NM_001305102, exon 14 of 14) 51384 NM_001286579 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 322-268 chr2 128804181 128804380 + 2 NA Intergenic L1MD2|LINE|L1 -60320 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 296-282 chr3 829376 829559 + 2 NA intron (NR_110118, intron 2 of 3) intron (NR_110118, intron 2 of 3) 237362 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 321-306 chr2 163548741 163548931 + 2 NA Intergenic Intergenic 187172 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 306-136 chr14 27108095 27108309 + 2 NA Intergenic Intergenic 199560 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 264-418 chr8 89323405 89323602 + 2 NA Intergenic Intergenic 434208 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 701-100 chr8 126574836 126575201 + 2 NA Intergenic L1ME4b|LINE|L1 -16540 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 424-17 chr1 242725535 242725831 + 2 NA Intergenic (AGG)n|Simple_repeat|Simple_repeat -200986 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 535-157 chr20 62075560 62075922 + 2 NA Intergenic AluSz6|SINE|Alu -9931 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 327-389 chr5 27265118 27265403 + 2 NA Intergenic Intergenic -207032 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 163-107 chr5 179462674 179462779 + 2 NA Intergenic L1MB8|LINE|L1 53985 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 352-99 chr12 37877779 37878081 + 2 NA Intergenic ALR/Alpha|Satellite|centr -438844 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 374-410 chr9 28709240 28709572 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 9899 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 272-283 chr3 162890786 162891015 + 2 NA Intergenic L1MC|LINE|L1 412401 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 218-264 chr5 45330111 45330292 + 2 NA intron (NM_021072, intron 5 of 7) L1MD3|LINE|L1 366179 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 260-328 chr4 175707871 175708079 + 2 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 79701 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 319-526 chr8 73088938 73089177 + 2 NA intron (NM_153225, intron 1 of 4) MER46C|DNA|TcMar-Tigger 4115 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 343-113 chr12 115989616 115989861 + 2 NA intron (NM_015335, intron 17 of 30) L2b|LINE|L2 158916 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 209-119 chr16 75021559 75021681 + 2 NA intron (NM_032268, intron 1 of 4) L1ME3E|LINE|L1 22596 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 300-342 chr4 167258584 167258834 + 2 NA Intergenic L1PB2|LINE|L1 -24119 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 446-214 chr4 38710577 38710937 + 2 NA Intergenic L1MDa|LINE|L1 -46129 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 320-337 chr3 28879183 28879377 + 2 NA Intergenic Intergenic 304002 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 464-211 chr6 49687305 49687550 + 2 NA Intergenic Intergenic 26116 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 239-382 chr7 89907569 89907738 + 2 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -211747 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 143-82 chr8 36942113 36942243 + 2 NA Intergenic L1MA5|LINE|L1 157804 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 387-168 chr2 52921424 52921654 + 2 NA Intergenic Intergenic -218924 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 281-119 chr14 62880060 62880284 + 2 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 165286 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 391-333 chr7 110800521 110800802 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -290345 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 339-16 chr1 73516103 73516435 + 2 NA Intergenic Intergenic -158410 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 300-85 chr12 24905916 24906162 + 2 NA intron (NM_001178091, intron 1 of 9) AluJb|SINE|Alu -2972 NM_001178093 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 362-102 chr11 116623740 116623988 + 2 NA Intergenic L1MDa|LINE|L1 -15558 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 685-102 chrX 134064783 134065272 + 2 NA Intergenic LTR105_Mam|LTR|ERVL -79381 NM_004484 2719 Hs.644108 NM_004484 ENSG00000147257 GPC3 DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1 glypican 3 protein-coding 378-263 chr20 56867465 56867728 + 2 NA Intergenic L2b|LINE|L2 238290 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 280-93 chr12 68113318 68113485 + 2 NA Intergenic MIRc|SINE|MIR 46339 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 603-98 chr20 23097249 23097708 + 2 NA Intergenic Intergenic -11154 NM_012072 22918 Hs.97199 NM_012072 ENSG00000125810 CD93 C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1 CD93 molecule protein-coding 225-11 chr1 172761668 172761856 + 2 NA Intergenic Intergenic 102659 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 299-270 chr22 39946089 39946352 + 2 NA promoter-TSS (NM_001291825) promoter-TSS (NM_001291825) -597 NM_001291825 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 318-238 chr19 44202787 44202974 + 2 NA Intergenic L1MB8|LINE|L1 -9648 NM_001289171 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 334-498 chr7 50640015 50640301 + 2 NA intron (NM_001350816, intron 6 of 17) intron (NM_001350816, intron 6 of 17) 65143 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 254-170 chr18 71834967 71835187 + 2 NA Intergenic Intergenic -52851 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 327-160 chr14 89098250 89098552 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 273750 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 309-511 chr7 51537519 51537787 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -144397 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 236-390 chr9 125629853 125630059 + 2 NA intron (NM_001006619, intron 4 of 10) Tigger19a|DNA|TcMar-Tigger 77252 NM_001006618 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 165-44 chr18 39342549 39342681 + 2 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 279560 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 217-66 chr11 30356999 30357172 + 2 NA Intergenic Intergenic 33981 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 242-91 chr13 42571164 42571353 + 2 NA intron (NM_033012, intron 2 of 6) L2c|LINE|L2 -2894 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 237-112 chr14 76554173 76554393 + 2 NA Intergenic L1ME3C|LINE|L1 182936 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 267-218 chr2 196221234 196221401 + 2 NA intron (NM_020760, intron 24 of 28) intron (NM_020760, intron 24 of 28) -38707 NR_110225 101927482 Hs.191841 NR_110225 HECW2-AS1 - HECW2 antisense RNA 1 ncRNA 286-189 chr2 19191466 19191674 + 2 NA Intergenic Intergenic -156859 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 412-314 chr7 88708744 88708971 + 2 NA Intergenic LTR16A|LTR|ERVL -50843 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 423-69 chr13 101278604 101278943 + 2 NA intron (NM_001350750, intron 9 of 42) intron (NM_001350750, intron 9 of 42) 137735 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 308-148 chr14 69748203 69748366 + 2 NA Intergenic AluJb|SINE|Alu -18858 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 420-293 chr8 121481310 121481611 + 2 NA Intergenic Intergenic -157886 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 613-10 chr1 166751671 166752219 + 2 NA Intergenic L1MEd|LINE|L1 -87530 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 515-215 chr5 114939307 114939663 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -166072 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 306-334 chr3 177212790 177213032 + 2 NA Intergenic MIR|SINE|MIR -15429 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 155-33 chr12 13009343 13009460 + 2 NA intron (NR_149067, intron 2 of 2) L1MA6|LINE|L1 8959 NR_002774 93164 Hs.593282 NR_002774 ENSG00000183935 HTR7P1 HTR7P 5-hydroxytryptamine receptor 7 pseudogene 1 pseudo 517-170 chr22 33105252 33105689 + 2 NA Intergenic Intergenic -3059 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 368-463 chr8 115276565 115276905 + 2 NA Intergenic Intergenic 391278 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 215-329 chr8 137923770 137923950 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 159685 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 210-175 chr3 82157403 82157565 + 2 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 171342 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 364-476 chr9 105202856 105203134 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -41610 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 301-128 chr14 87649056 87649231 + 2 NA intron (NR_146551, intron 1 of 2) THE1D-int|LTR|ERVL-MaLR 6151 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 276-259 chr20 12651846 12652026 + 2 NA Intergenic Intergenic 285027 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 422-226 chr5 2351326 2351738 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -39331 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 329-80 chr10 114638769 114638954 + 2 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -6464 NM_001352440 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 570-149 chr4 159842125 159842546 + 2 NA Intergenic Intergenic -64551 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 376-226 chr21 16105280 16105614 + 2 NA intron (NR_111005, intron 1 of 6) L1M3|LINE|L1 34333 NR_111004 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 225-400 chr9 116074851 116075023 + 2 NA Intergenic Intergenic -78854 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 264-171 chr18 1222232 1222400 + 2 NA Intergenic L2|LINE|L2 137313 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 626-73 chr2 139540728 139541224 + 2 NA Intergenic Intergenic 643652 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 326-347 chr3 109720774 109721094 + 2 NA Intergenic Intergenic 118106 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 314-363 chr3 18268914 18269120 + 2 NA TTS (NR_161333) TTS (NR_161333) 156322 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 528-223 chr6 63124376 63124732 + 2 NA Intergenic Intergenic 195423 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 183-163 chr8 114468864 114469005 + 2 NA Intergenic L1MEb|LINE|L1 -1031995 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 304-275 chr2 141866902 141867144 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 264678 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 378-38 chr1 218141802 218142047 + 2 NA Intergenic L1PA3|LINE|L1 98419 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 372-311 chr3 3915979 3916212 + 2 NA Intergenic MIRc|SINE|MIR -115220 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 314-626 chrX 117505509 117505698 + 2 NA Intergenic Intergenic 468135 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 626-8 chr1 118548886 118549457 + 2 NA Intergenic L1PA14|LINE|L1 -363943 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 280-359 chr6 123755797 123756003 + 2 NA Intergenic L1MD2|LINE|L1 -47946 NM_001300738 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 370-390 chr6 41274132 41274489 + 2 NA 3' UTR (NM_018643, exon 4 of 4) 3' UTR (NM_018643, exon 4 of 4) 12372 NM_001242589 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 276-399 chr6 52103266 52103532 + 2 NA Intergenic MIRb|SINE|MIR -15786 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 338-78 chr10 106526042 106526295 + 2 NA Intergenic Intergenic 386003 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 367-382 chr5 178925068 178925420 + 2 NA intron (NM_030613, intron 4 of 4) L1ME3D|LINE|L1 -15954 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 439-165 chr20 54880847 54881136 + 2 NA Intergenic Intergenic 405398 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 794-36 chr5 84514655 84515097 + 2 NA Intergenic L1PA13|LINE|L1 -129996 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 385-51 chr11 73611641 73611973 + 2 NA Intergenic L1MC2|LINE|L1 -13695 NM_001286050 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 564-154 chr5 60073722 60074193 + 2 NA intron (NM_001349243, intron 2 of 16) L1PREC2|LINE|L1 -180231 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 326-167 chr15 57834171 57834486 + 2 NA Intergenic L1PA16|LINE|L1 127614 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 312-490 chr7 71371058 71371284 + 2 NA intron (NM_022479, intron 2 of 10) intron (NM_022479, intron 2 of 10) -63401 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 479-73 chr15 53948999 53949439 + 2 NA Intergenic Intergenic -29222 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 518-103 chr16 82817855 82818251 + 2 NA intron (NR_110938, intron 1 of 2) (ATAT)n|Simple_repeat|Simple_repeat 44734 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 259-336 chr6 17973051 17973278 + 2 NA intron (NM_001243423, intron 2 of 2) intron (NM_001243423, intron 2 of 2) 14471 NM_001105567 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 261-297 chr5 2920899 2921060 + 2 NA TTS (NR_136207) TTS (NR_136207) 3125 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 289-115 chr12 92832842 92833030 + 2 NA intron (NM_003566, intron 10 of 28) intron (NM_003566, intron 10 of 28) 96359 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 550-251 chrX 88323039 88323437 + 2 NA Intergenic Intergenic -423987 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 269-199 chr2 104809818 104810011 + 2 NA intron (NR_037883, intron 3 of 3) intron (NR_037883, intron 3 of 3) 41562 NR_131235 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 215-335 chr9 30530324 30530480 + 2 NA Intergenic Intergenic -121948 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 615-76 chr22 27895288 27895798 + 2 NA intron (NM_001284278, intron 6 of 11) AluSx|SINE|Alu 23671 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 130-85 chr8 83722070 83722138 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 318346 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 443-299 chr8 132074726 132075052 + 2 NA intron (NM_001145095, intron 13 of 15) (ATATAG)n|Simple_repeat|Simple_repeat -15507 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 254-319 chr5 121985458 121985653 + 2 NA intron (NM_152546, intron 3 of 7) intron (NM_152546, intron 3 of 7) 23580 NM_152546 153443 Hs.107622 NM_152546 ENSG00000151304 SRFBP1 BUD22|P49|Rlb1|STRAP|p49/STRAP serum response factor binding protein 1 protein-coding 262-123 chr14 52477162 52477314 + 2 NA intron (NM_001160047, intron 14 of 20) L1PB1|LINE|L1 75267 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 350-11 chr1 93056645 93056836 + 2 NA Intergenic Charlie13b|DNA|hAT-Charlie -22495 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 310-274 chr2 181846690 181846958 + 2 NA Intergenic MADE2|DNA|TcMar-Mariner -44906 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 318-345 chr3 10906777 10907007 + 2 NA intron (NM_014229, intron 6 of 13) L1M8|LINE|L1 -85842 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 397-357 chr9 99563462 99563708 + 2 NA Intergenic LTR16|LTR|ERVL -188328 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 232-188 chr2 143113176 143113323 + 2 NA Intergenic Intergenic -16170 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 302-259 chr21 25516532 25516770 + 2 NA Intergenic Intergenic -45494 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene ncRNA 249-17 chr1 104174482 104174642 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 101539 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 554-88 chr16 62169264 62169679 + 2 NA Intergenic L1PA10|LINE|L1 -133033 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 744-33 chr2 103715839 103716426 + 2 NA Intergenic L1PREC2|LINE|L1 692200 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 265-103 chr14 51085612 51085870 + 2 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 9963 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 290-82 chr11 75052129 75052374 + 2 NA Intergenic L1M4|LINE|L1 44639 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 482-297 chr9 99803624 99804009 + 2 NA intron (NR_109802, intron 2 of 6) L2a|LINE|L2 16073 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 304-529 chr8 112311984 112312148 + 2 NA intron (NM_001363185, intron 45 of 66) intron (NM_001363185, intron 45 of 66) -331427 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 354-469 chr8 89028479 89028684 + 2 NA Intergenic L1PA16|LINE|L1 -701098 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 298-257 chr20 45200425 45200694 + 2 NA Intergenic L1M1|LINE|L1 -6474 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 416-248 chr4 63253187 63253496 + 2 NA Intergenic Intergenic -1091576 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 332-29 chr1 186590435 186590601 + 2 NA Intergenic L1PA14|LINE|L1 89905 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 228-235 chr4 28959695 28959859 + 2 NA Intergenic L1ME1|LINE|L1 -37007 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 311-277 chr2 188017057 188017252 + 2 NA Intergenic Intergenic 270537 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 420-212 chr4 141482642 141482869 + 2 NA Intergenic Intergenic -150138 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 235-58 chr11 7425868 7426085 + 2 NA intron (NM_175733, intron 6 of 6) intron (NM_175733, intron 6 of 6) 39859 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 126-37 chr20 43619059 43619137 + 2 NA intron (NM_001323578, intron 8 of 13) intron (NM_001323578, intron 8 of 13) 28161 NM_001323580 51098 Hs.444332 NM_016004 ENSG00000101052 IFT52 C20orf9|CGI-53|NGD2|NGD5 intraflagellar transport 52 protein-coding 425-94 chr15 25162129 25162458 + 2 NA intron (NR_146177, intron 61 of 147) MER34-int|LTR|ERV1 -8430 NR_001291 338433 NR_001291 ENSG00000201831 SNORD115-1 HBII-52-1|RNHBII52 small nucleolar RNA, C/D box 115-1 snoRNA 234-12 chr1 100974016 100974177 + 2 NA intron (NM_133496, intron 10 of 10) L2a|LINE|L2 51688 NM_001077395 51611 Hs.440776 NM_015958 ENSG00000117543 DPH5 AD-018|CGI-30|HSPC143|NPD015 diphthamide biosynthesis 5 protein-coding 269-19 chr1 162777222 162777390 + 2 NA intron (NM_006182, intron 16 of 17) L1ME4a|LINE|L1 -13396 NM_016371 51478 Hs.492925 NM_016371 ENSG00000132196 HSD17B7 PRAP|SDR37C1 hydroxysteroid 17-beta dehydrogenase 7 protein-coding 193-35 chr11 28691506 28691625 + 2 NA Intergenic MIR|SINE|MIR -214017 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 220-6 chr1 68546967 68547115 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -49959 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 308-247 chr2 144037489 144037698 + 2 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 100526 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 288-206 chr2 122504419 122504592 + 2 NA Intergenic Intergenic 568976 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 428-158 chr20 48395430 48395677 + 2 NA Intergenic Intergenic 35642 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 143-17 chr12 31353844 31353968 + 2 NA Intergenic Intergenic 15395 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 291-447 chr8 78659196 78659409 + 2 NA Intergenic Intergenic -6787 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 406-15 chr1 152520065 152520303 + 2 NA Intergenic L2a|LINE|L2 5702 NM_019060 54544 Hs.110196 NM_019060 ENSG00000169509 CRCT1 C1orf42|NICE-1|NICE1 cysteine rich C-terminal 1 protein-coding 807-2 chr1 61556741 61557238 + 2 NA Intergenic Intergenic -97253 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 501-116 chr2 140516827 140517245 + 2 NA intron (NM_018557, intron 49 of 90) intron (NM_018557, intron 49 of 90) 69649 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 241-71 chr11 100537305 100537508 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie -149882 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 202-268 chr9 27956484 27956656 + 2 NA intron (NM_001354574, intron 5 of 5) L1ME3|LINE|L1 -382704 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 292-34 chr1 240775788 240776055 + 2 NA 3' UTR (NM_001282773, exon 16 of 16) 3' UTR (NM_001282773, exon 16 of 16) -163766 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 172-19 chr10 94061405 94061534 + 2 NA intron (NM_001288989, intron 2 of 32) intron (NM_001288989, intron 2 of 32) -27557 NM_001165979 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 285-185 chr2 6631989 6632144 + 2 NA intron (NR_110498, intron 2 of 2) intron (NR_110498, intron 2 of 2) 1721 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 236-23 chr1 180737340 180737495 + 2 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) 105395 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 236-354 chr8 78962668 78962897 + 2 NA Intergenic L2c|LINE|L2 125253 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 386-67 chr12 5306944 5307214 + 2 NA Intergenic Intergenic -63928 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 259-239 chr21 27161763 27161933 + 2 NA Intergenic Intergenic -194760 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 215-225 chr4 74886778 74886964 + 2 NA Intergenic LTR88b|LTR|Gypsy? -46245 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 239-159 chr2 6007149 6007298 + 2 NA Intergenic Intergenic 25245 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 399-135 chr2 14939428 14939668 + 2 NA Intergenic Intergenic 306831 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 456-62 chr12 59491319 59491674 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -104533 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 626-151 chr9 94214931 94215328 + 2 NA intron (NR_160773, intron 1 of 2) L1ME1|LINE|L1 -10563 NR_046163 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 217-30 chr10 8563798 8563952 + 2 NA Intergenic Intergenic 30516 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 208-196 chr4 133581959 133582133 + 2 NA Intergenic Intergenic 432752 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 506-57 chr11 84768100 84768463 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -47339 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 295-85 chr11 104084836 104085045 + 2 NA intron (NM_025208, intron 1 of 6) (TA)n|Simple_repeat|Simple_repeat 48300 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 398-128 chr16 64082215 64082562 + 2 NA Intergenic MIRb|SINE|MIR 1039675 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 316-164 chr14 42178583 42178842 + 2 NA Intergenic L1MA7|LINE|L1 571856 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 393-179 chr2 176165270 176165548 + 2 NA intron (NM_006898, intron 2 of 3) CpG 8102 NM_006898 3232 Hs.93574 NM_006898 ENSG00000128652 HOXD3 HOX1D|HOX4|HOX4A|Hox-4.1 homeobox D3 protein-coding 309-425 chr5 15329920 15330166 + 2 NA Intergenic Intergenic -63483 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 371-401 chr8 138633295 138633492 + 2 NA intron (NM_152888, intron 49 of 64) intron (NM_152888, intron 49 of 64) -135663 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 296-235 chr2 108213087 108213350 + 2 NA intron (NR_131251, intron 1 of 4) L1M2|LINE|L1 4623 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 264-450 chrX 47470867 47471011 + 2 NA intron (NM_001324150, intron 1 of 5) intron (NM_001324150, intron 1 of 5) -3269 NM_001324157 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 266-3 chr1 14125513 14125698 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 294368 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 435-34 chr10 67481058 67481389 + 2 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -77813 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 428-74 chr15 25997962 25998374 + 2 NA intron (NR_040082, intron 1 of 4) intron (NR_040082, intron 1 of 4) 95808 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 327-127 chr12 111975744 111976002 + 2 NA intron (NM_001294314, intron 5 of 12) L1MC2|LINE|L1 37292 NM_001193531 89894 Hs.506815 NM_138341 ENSG00000198270 TMEM116 - transmembrane protein 116 protein-coding 483-284 chr9 29875408 29875736 + 2 NA Intergenic Intergenic 532882 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 370-50 chr10 70006535 70006897 + 2 NA Intergenic HAL1M8|LINE|L1 -46130 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 376-86 chr12 110555023 110555268 + 2 NA intron (NR_138550, intron 1 of 4) intron (NR_138550, intron 1 of 4) 28173 NR_138550 160760 Hs.13854 NM_139283 ENSG00000196850 PPTC7 TA-PP2C|TAPP2C PTC7 protein phosphatase homolog protein-coding 570-200 chr8 124404956 124405374 + 2 NA Intergenic L2b|LINE|L2 -32466 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 483-74 chr15 27629126 27629496 + 2 NA Intergenic L1MEg|LINE|L1 -467992 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 215-7 chr1 95921990 95922157 + 2 NA Intergenic Intergenic -69995 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 317-91 chr11 102576999 102577304 + 2 NA 3' UTR (NM_004771, exon 10 of 10) 3' UTR (NM_004771, exon 10 of 10) -46404 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 358-459 chr7 145503599 145503797 + 2 NA Intergenic Intergenic -667645 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 357-425 chr8 4018714 4018936 + 2 NA intron (NM_033225, intron 4 of 69) MIR|SINE|MIR 976089 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 228-285 chr5 178714281 178714436 + 2 NA intron (NM_005649, intron 4 of 4) intron (NM_005649, intron 4 of 4) 16301 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 261-159 chr18 51826343 51826556 + 2 NA Intergenic Intergenic 434407 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 618-58 chr2 67537723 67538170 + 2 NA Intergenic L1PB3|LINE|L1 140613 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 732-67 chr3 181443244 181443648 + 2 NA promoter-TSS (NR_125407) promoter-TSS (NR_125407) -960 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 504-284 chrX 37395473 37395907 + 2 NA intron (NM_000950, intron 2 of 4) intron (NM_000950, intron 2 of 4) 46326 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 264-384 chr7 38989955 38990164 + 2 NA intron (NR_138047, intron 3 of 6) intron (NR_138047, intron 3 of 6) 12150 NM_007252 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 255-342 chr5 136907211 136907344 + 2 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -220920 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 468-136 chr2 35586334 35586681 + 2 NA Intergenic MER66-int|LTR|ERV1 115102 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 230-26 chr1 220062020 220062207 + 2 NA intron (NM_001286150, intron 6 of 7) intron (NM_001286150, intron 6 of 7) -15608 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 521-39 chr10 119352450 119352844 + 2 NA intron (NM_005308, intron 2 of 15) intron (NM_005308, intron 2 of 15) -25325 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 211-294 chr8 27068521 27068669 + 2 NA Intergenic AluJr|SINE|Alu -19632 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 264-443 chr9 75741475 75741621 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy -149096 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 354-294 chr3 60050342 60050581 + 2 NA intron (NM_001320901, intron 2 of 6) intron (NM_001320901, intron 2 of 6) 30448 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 267-416 chr8 59437885 59438104 + 2 NA Intergenic Intergenic 318784 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 349-46 chr10 15779403 15779684 + 2 NA intron (NM_024948, intron 14 of 14) intron (NM_024948, intron 14 of 14) -59208 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 214-179 chr2 194375745 194375882 + 2 NA intron (NR_110222, intron 3 of 5) L1PB4|LINE|L1 31544 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 449-155 chr21 27809864 27810265 + 2 NA Intergenic Intergenic 87685 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 781-37 chr20 22147771 22148234 + 2 NA Intergenic Intergenic 93912 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 673-46 chr19 12179165 12179691 + 2 NA intron (NM_001348014, intron 2 of 4) AluSx|SINE|Alu -15587 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 558-166 chr4 187228851 187229251 + 2 NA Intergenic (AGACAG)n|Simple_repeat|Simple_repeat 27065 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 193-75 chr16 46882638 46882785 + 2 NA Intergenic Intergenic -1651 NM_133443 84706 Hs.460693 NM_133443 ENSG00000166123 GPT2 ALT2|GPT 2|MRT49 glutamic--pyruvic transaminase 2 protein-coding 503-305 chr9 83465729 83466049 + 2 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) 1853 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 292-440 chr8 111652351 111652532 + 2 NA Intergenic Intergenic 275802 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 724-55 chr3 109148965 109149617 + 2 NA intron (NM_001351622, intron 3 of 3) intron (NM_001351622, intron 3 of 3) 12572 NR_161294 401081 Hs.280892 NM_001351622 ENSG00000241224 C3orf85 - chromosome 3 open reading frame 85 protein-coding 216-2 chr1 18562407 18562585 + 2 NA Intergenic AluJo|SINE|Alu -68350 NM_001135254 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 158-63 chr2 167675114 167675238 + 2 NA Intergenic Intergenic -143496 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 319-383 chr4 89106648 89106888 + 2 NA Intergenic HERVL18-int|LTR|ERVL -6049 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 373-324 chr5 76958272 76958535 + 2 NA intron (NM_001882, intron 4 of 6) intron (NM_001882, intron 4 of 6) 5358 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 294-31 chr10 24841834 24841981 + 2 NA Intergenic MER21C|LTR|ERVL 110699 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 625-60 chr20 41816334 41816770 + 2 NA Intergenic Intergenic -198175 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 274-248 chr22 22107840 22108044 + 2 NA Intergenic MER21B|LTR|ERVL -64008 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 115-13 chr14 70815848 70815940 + 2 NA Intergenic L1MA8|LINE|L1 -6381 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 209-56 chr11 56404164 56404315 + 2 NA Intergenic MIRb|SINE|MIR -8358 NR_145506 79482 NM_001348230 ENSG00000272987 OR5AL1 OR5AL1P olfactory receptor family 5 subfamily AL member 1 (gene/pseudogene) protein-coding 360-159 chr16 71416892 71417197 + 2 NA intron (NR_146574, intron 1 of 2) L1M5|LINE|L1 9420 NR_146574 105371333 Hs.578738 NR_146574 ENSG00000261348 LINC02136 - long intergenic non-protein coding RNA 2136 ncRNA 491-186 chr4 95982910 95983217 + 2 NA Intergenic Intergenic 142970 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 397-124 chr18 11575601 11575934 + 2 NA Intergenic L1ME3G|LINE|L1 -33791 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 319-492 chr7 15586222 15586457 + 2 NA Intergenic Intergenic -24324 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 161-64 chr3 24802194 24802323 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -27065 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 220-191 chr2 198515374 198515528 + 2 NA Intergenic L1MEg|LINE|L1 -140354 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 353-296 chr21 23869027 23869239 + 2 NA Intergenic Intergenic 452244 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 308-34 chr1 190813761 190814000 + 2 NA Intergenic L1PA13|LINE|L1 188990 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 251-117 chr15 97923638 97923838 + 2 NA Intergenic Intergenic -36965 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 233-402 chr9 105846456 105846611 + 2 NA Intergenic Intergenic 151992 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 415-29 chr10 69791385 69791750 + 2 NA Intergenic Intergenic -10339 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 551-233 chr9 112943732 112944243 + 2 NA Intergenic AluY|SINE|Alu -53111 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 149-14 chr10 26684141 26684228 + 2 NA Intergenic L2c|LINE|L2 -13240 NM_001321978 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 232-49 chr10 127869959 127870107 + 2 NA Intergenic L1PBa|LINE|L1 22908 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 347-364 chr4 176410443 176410636 + 2 NA Intergenic Intergenic 90573 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 371-35 chr10 14252199 14252469 + 2 NA intron (NR_134578, intron 2 of 3) L1MC4|LINE|L1 78550 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 535-158 chr20 63334381 63334846 + 2 NA 3' UTR (NM_020882, exon 36 of 36) 3' UTR (NM_020882, exon 36 of 36) -25375 NR_110634 100130587 Hs.640129 NR_110634 ENSG00000203900 LOC100130587 - uncharacterized LOC100130587 ncRNA 240-110 chr12 60125547 60125783 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 436295 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 578-80 chr2 41734706 41735077 + 2 NA Intergenic Intergenic -142664 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 307-446 chr7 40346726 40346879 + 2 NA intron (NM_024728, intron 9 of 14) MLT1A|LTR|ERVL-MaLR 211826 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 256-14 chr1 81163667 81163824 + 2 NA Intergenic L1M1|LINE|L1 -142447 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 379-104 chr15 79225812 79226109 + 2 NA intron (NR_038997, intron 1 of 1) L3|LINE|CR1 16172 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 513-189 chr3 122033472 122033876 + 2 NA Intergenic L1ME3A|LINE|L1 -11427 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 743-81 chr7 83480330 83480949 + 2 NA intron (NM_001178129, intron 2 of 16) intron (NM_001178129, intron 2 of 16) 160792 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 321-407 chr4 31965903 31966131 + 2 NA Intergenic Intergenic -31362 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 218-180 chr2 192697315 192697522 + 2 NA Intergenic Intergenic -52427 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 370-427 chr7 112046298 112046575 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 159963 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 173-23 chr12 802355 802512 + 2 NA intron (NM_001184985, intron 1 of 27) intron (NM_001184985, intron 1 of 27) 49510 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 227-154 chr19 50064702 50064830 + 2 NA intron (NR_138096, intron 2 of 4) MLT1K|LTR|ERVL-MaLR 14177 NR_027257 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 272-136 chr16 6428753 6428917 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -344974 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 386-87 chr14 39075186 39075527 + 2 NA intron (NM_006364, intron 8 of 19) intron (NM_006364, intron 8 of 19) -27784 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 171-27 chr12 128367660 128367795 + 2 NA intron (NM_001136103, intron 1 of 8) MER33|DNA|hAT-Charlie 73635 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 227-264 chr4 115206008 115206215 + 2 NA Intergenic Intergenic -92491 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 513-246 chr6 61495542 61495866 + 2 NA Intergenic ALR/Alpha|Satellite|centr -78426 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 224-73 chr13 66053028 66053248 + 2 NA Intergenic Intergenic -86709 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 228-17 chr1 119012985 119013209 + 2 NA Intergenic L2a|LINE|L2 -11692 NR_135035 105378933 Hs.599652 NR_135034 ENSG00000226172 LOC105378933 - uncharacterized LOC105378933 ncRNA 230-353 chr7 52984510 52984658 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -51049 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 256-84 chr12 21369292 21369483 + 2 NA intron (NM_001329201, intron 1 of 2) L2a|LINE|L2 -3515 NM_000415 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 368-417 chr7 30672099 30672320 + 2 NA intron (NM_001202481, intron 4 of 13) L2c|LINE|L2 10247 NM_001883 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 397-136 chr19 52262293 52262641 + 2 NA Intergenic L1MB1|LINE|L1 -7120 NM_001010851 90321 Hs.439662 NM_001010851 ENSG00000196214 ZNF766 - zinc finger protein 766 protein-coding 976-8 chr17 11632122 11632698 + 2 NA intron (NM_001372, intron 7 of 68) intron (NM_001372, intron 7 of 68) 33940 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 286-34 chr10 23209158 23209409 + 2 NA intron (NM_001365862, intron 15 of 15) intron (NM_001365862, intron 15 of 15) 16971 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 538-243 chr8 125761168 125761566 + 2 NA Intergenic Intergenic 189830 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 377-274 chr3 127608480 127608804 + 2 NA intron (NR_073375, intron 7 of 15) intron (NR_073375, intron 7 of 15) 10231 NR_073375 4171 Hs.477481 NM_004526 ENSG00000073111 MCM2 BM28|CCNL1|CDCL1|D3S3194|DFNA70|MITOTIN|cdc19 minichromosome maintenance complex component 2 protein-coding 331-569 chrX 74337369 74337690 + 2 NA Intergenic L1M2|LINE|L1 33349 NM_203303 389874 Hs.157231 NM_203303 ENSG00000187969 ZCCHC13 CNBP2|ZNF9L zinc finger CCHC-type containing 13 protein-coding 448-136 chr20 51314407 51314798 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 138375 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 216-329 chr8 10319992 10320149 + 2 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -154495 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 277-82 chr11 111114947 111115184 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -17747 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 287-406 chr8 89442820 89443073 + 2 NA Intergenic L1M5|LINE|L1 314765 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 375-398 chr8 34042800 34043159 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -442873 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 388-336 chr8 3352468 3352668 + 2 NA intron (NM_033225, intron 21 of 69) AluSq2|SINE|Alu -624117 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 449-207 chr5 27685145 27685554 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 213057 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 146-76 chr6 23667454 23667571 + 2 NA Intergenic L1MC1|LINE|L1 -458703 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 223-181 chr20 12274843 12274991 + 2 NA Intergenic L1M3|LINE|L1 357024 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 397-310 chr7 95352034 95352251 + 2 NA Intergenic MER50|LTR|ERV1 -27610 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 225-323 chr7 29847597 29847784 + 2 NA intron (NM_001080529, intron 2 of 8) MER39B|LTR|ERV1 41136 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 266-361 chr6 52171972 52172145 + 2 NA Intergenic Intergenic -14317 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 358-399 chr6 37357709 37357915 + 2 NA intron (NR_046399, intron 1 of 7) intron (NR_046399, intron 1 of 7) 3829 NR_046399 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 203-257 chrX 58228144 58228312 + 2 NA Intergenic HSAT4|Satellite|centr -317595 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 240-205 chr2 9069135 9069269 + 2 NA Intergenic L1MC3|LINE|L1 -65518 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 136-81 chr7 50929510 50929591 + 2 NA Intergenic L1ME3|LINE|L1 -136097 NM_001371008 247-74 chr12 520238 520437 + 2 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 60398 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 448-186 chr4 93243670 93244005 + 2 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -584916 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 267-116 chr14 86351031 86351192 + 2 NA Intergenic Intergenic 416433 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 346-161 chr15 67744360 67744672 + 2 NA intron (NM_001206804, intron 17 of 21) intron (NM_001206804, intron 17 of 21) -80993 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 314-596 chr9 3017701 3017881 + 2 NA Intergenic L1ME4a|LINE|L1 -163798 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 597-27 chr10 91001872 91002314 + 2 NA Intergenic L2c|LINE|L2 -31073 NR_134319 105378430 Hs.512240 NR_134319 LOC105378430 - uncharacterized LOC105378430 ncRNA 171-67 chr20 53011368 53011490 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 39071 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 242-197 chr2 128673045 128673226 + 2 NA Intergenic L1MD2|LINE|L1 -191465 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 394-303 chr7 45270236 45270477 + 2 NA Intergenic L1MEh|LINE|L1 112565 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 280-372 chr7 10861724 10861967 + 2 NA Intergenic MLT2D|LTR|ERVL 78308 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 330-317 chr20 11697321 11697551 + 2 NA Intergenic LTR16A2|LTR|ERVL 173279 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 347-500 chr8 60335581 60335797 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -54289 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 155-76 chr4 111127392 111127474 + 2 NA Intergenic Intergenic -266786 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 269-224 chr20 45315220 45315385 + 2 NA intron (NM_014276, intron 9 of 11) L1MC4|LINE|L1 -6773 NM_003833 8785 Hs.278489 NM_003833 ENSG00000124159 MATN4 - matrilin 4 protein-coding 195-235 chr8 10462204 10462337 + 2 NA Intergenic MLT2B2|LTR|ERVL -12295 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 273-262 chr20 48352459 48352648 + 2 NA Intergenic Intergenic -7358 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 132-41 chr2 52441706 52441830 + 2 NA Intergenic Intergenic 71120 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 192-160 chr5 40242192 40242350 + 2 NA Intergenic Intergenic 189980 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 457-239 chr7 83049910 83050207 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 112826 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 327-154 chr14 66657471 66657657 + 2 NA intron (NM_001024218, intron 1 of 21) Tigger1|DNA|TcMar-Tigger 150157 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 163-14 chr10 23817482 23817612 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 122820 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 254-47 chr10 98217239 98217409 + 2 NA intron (NM_001256619, intron 6 of 10) L1M2|LINE|L1 50870 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 511-206 chr5 39350951 39351332 + 2 NA intron (NM_001737, intron 1 of 10) MSTA-int|LTR|ERVL-MaLR 13354 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 340-65 chr10 130901107 130901339 + 2 NA Intergenic Intergenic 61445 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 360-246 chr2 173687437 173687739 + 2 NA Intergenic Intergenic 276292 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 303-337 chr4 188856414 188856659 + 2 NA Intergenic L1MEf|LINE|L1 79879 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 446-69 chr11 114741631 114742006 + 2 NA Intergenic L1MA9|LINE|L1 63291 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 317-147 chr14 61847666 61847846 + 2 NA intron (NM_001367656, intron 1 of 7) L1MA2|LINE|L1 35053 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 200-99 chr16 75900808 75901001 + 2 NA Intergenic L1MC4|LINE|L1 -174414 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 419-188 chr3 83885435 83885792 + 2 NA Intergenic Intergenic 983962 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 730-73 chr7 52983712 52984229 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -51663 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 339-443 chr5 34773820 34774096 + 2 NA intron (NM_015577, intron 3 of 17) L1M1|LINE|L1 -65206 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 310-283 chr2 239382357 239382585 + 2 NA intron (NM_006037, intron 1 of 26) intron (NM_006037, intron 1 of 26) 18478 NM_006037 9759 Hs.20516 NM_006037 ENSG00000068024 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 320-441 chr5 46222298 46222475 + 2 NA Intergenic ALR/Alpha|Satellite|centr -526006 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 225-29 chr10 31753236 31753417 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 155600 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 233-227 chr3 16033312 16033439 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -141305 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 194-206 chr8 26387905 26388069 + 2 NA intron (NM_004331, intron 1 of 5) L1ME4b|LINE|L1 -2426 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 237-186 chr2 110911953 110912100 + 2 NA intron (NM_001371254, intron 11 of 18) L1MB7|LINE|L1 179453 NM_001371254 496-91 chr14 82104564 82104940 + 2 NA Intergenic Intergenic -361614 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 298-18 chr1 174315906 174316072 + 2 NA intron (NM_001366445, intron 11 of 13) L1MA1|LINE|L1 40889 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 202-244 chr7 120601877 120602003 + 2 NA intron (NM_012281, intron 1 of 5) MamGypsy2-I|LTR|Gypsy 256204 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 548-191 chr5 161261039 161261480 + 2 NA Intergenic Intergenic 286865 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 364-90 chr11 70850335 70850573 + 2 NA intron (NM_012309, intron 10 of 24) intron (NM_012309, intron 10 of 24) -12336 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 322-288 chr20 20382782 20382967 + 2 NA Intergenic MIRb|SINE|MIR 14770 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 229-250 chr3 79231725 79231930 + 2 NA intron (NM_002941, intron 2 of 30) L1PA13|LINE|L1 -179900 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 335-394 chr4 114895931 114896211 + 2 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 217549 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 248-303 chr5 26347687 26347875 + 2 NA Intergenic Intergenic 690805 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 262-142 chr15 53840122 53840349 + 2 NA Intergenic Intergenic -77357 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 180-15 chr10 36721504 36721610 + 2 NA Intergenic Intergenic -404300 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 229-10 chr1 91352690 91352884 + 2 NA intron (NM_001017975, intron 15 of 38) intron (NM_001017975, intron 15 of 38) 52050 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 232-379 chr8 96200406 96200540 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 35161 NR_045639 7381 Hs.131255 NM_006294 ENSG00000156467 UQCRB MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC ubiquinol-cytochrome c reductase binding protein protein-coding 325-352 chr3 86766639 86766901 + 2 NA Intergenic Intergenic 224379 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 254-413 chr8 96054460 96054673 + 2 NA Intergenic Intergenic -106218 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 357-166 chr18 13143969 13144175 + 2 NA Intergenic LOR1a|LTR|ERV1 -74688 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 394-45 chr10 83316124 83316399 + 2 NA Intergenic L1PB3|LINE|L1 360828 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 358-461 chr8 8354468 8354741 + 2 NA intron (NM_001369759, intron 3 of 5) L1M3|LINE|L1 31640 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 602-142 chrX 69794882 69795438 + 2 NA intron (NM_001005613, intron 2 of 2) AluJr|SINE|Alu 179047 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 247-216 chr2 134552406 134552610 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 166492 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 345-43 chr1 244142940 244143257 + 2 NA Intergenic (TAATTT)n|Simple_repeat|Simple_repeat 89893 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 198-75 chr16 8191651 8191846 + 2 NA Intergenic Intergenic 398090 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 351-43 chr10 55719514 55719732 + 2 NA Intergenic Intergenic -91681 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 232-327 chr6 67491413 67491612 + 2 NA Intergenic L1PREC2|LINE|L1 -563839 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 262-117 chr14 31863902 31864080 + 2 NA Intergenic L1M5|LINE|L1 -80862 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 362-138 chr13 95490625 95490866 + 2 NA intron (NR_046533, intron 3 of 3) L1PB1|LINE|L1 43165 NR_046533 100874194 Hs.569229 NR_046533 ENSG00000223392 CLDN10-AS1 - CLDN10 antisense RNA 1 ncRNA 207-158 chr20 10051314 10051454 + 2 NA intron (NM_022096, intron 7 of 10) intron (NM_022096, intron 7 of 10) 16397 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 400-59 chr11 97062985 97063229 + 2 NA Intergenic L1MA4A|LINE|L1 554682 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 381-386 chr8 107586670 107586938 + 2 NA Intergenic SATR1|Satellite|Satellite -88886 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 534-124 chr2 120114457 120114828 + 2 NA intron (NM_001330310, intron 16 of 24) L1MB7|LINE|L1 101565 NM_001184937 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 155-77 chr5 16076352 16076455 + 2 NA intron (NM_001102562, intron 3 of 3) intron (NM_001102562, intron 3 of 3) 103388 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 344-415 chr6 39572257 39572529 + 2 NA intron (NM_001289020, intron 10 of 21) L2a|LINE|L2 -141003 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 456-158 chr2 77849011 77849300 + 2 NA intron (NR_110288, intron 2 of 3) L1MC1|LINE|L1 -66779 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 398-291 chr6 51129635 51129984 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 310938 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 423-291 chr8 59204944 59205292 + 2 NA Intergenic L1MEg1|LINE|L1 85908 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 231-235 chr3 99585334 99585471 + 2 NA Intergenic Intergenic -53192 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 287-132 chr14 48298439 48298640 + 2 NA Intergenic Intergenic -503525 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 347-551 chr9 80346752 80347015 + 2 NA Intergenic L1MA4|LINE|L1 371860 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 541-81 chr16 66290846 66291270 + 2 NA Intergenic L1MA4|LINE|L1 -75633 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 485-143 chr2 123946294 123946627 + 2 NA Intergenic L1MA1|LINE|L1 78714 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 264-198 chr2 50018577 50018747 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -44459 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 160-23 chr12 82031502 82031595 + 2 NA Intergenic Intergenic 77829 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 361-333 chr4 144211869 144212097 + 2 NA Intergenic Intergenic -71265 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 161-51 chr2 62268303 62268409 + 2 NA Intergenic L1ME4b|LINE|L1 52835 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 239-118 chr15 61938657 61938858 + 2 NA intron (NM_001018088, intron 47 of 81) L1ME3Cz|LINE|L1 121690 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 288-352 chr6 9357323 9357486 + 2 NA Intergenic L1MA4|LINE|L1 705195 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 393-271 chr5 29543056 29543392 + 2 NA Intergenic L1PA17|LINE|L1 -147248 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 259-7 chr1 43489939 43490161 + 2 NA Intergenic L1MB7|LINE|L1 -35987 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 232-129 chr17 11795741 11795884 + 2 NA intron (NM_001372, intron 42 of 68) intron (NM_001372, intron 42 of 68) -87090 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 257-319 chr5 29811629 29811870 + 2 NA Intergenic LTR55|LTR|ERVL? -68811 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 333-273 chr2 153985109 153985346 + 2 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 40833 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 504-128 chr2 99016120 99016581 + 2 NA intron (NR_146001, intron 18 of 18) L1PB1|LINE|L1 -80125 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 204-66 chr12 115847655 115847816 + 2 NA Intergenic MLT2D|LTR|ERVL 300919 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 447-180 chr3 136337668 136338050 + 2 NA 3' UTR (NM_005862, exon 34 of 34) 3' UTR (NM_005862, exon 34 of 34) 87519 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 238-357 chr7 48364511 48364683 + 2 NA intron (NM_152701, intron 31 of 61) L1MA4|LINE|L1 193139 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 414-142 chr2 11835351 11835713 + 2 NA Intergenic Intergenic 1454 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 423-316 chr9 119251870 119252172 + 2 NA intron (NM_014618, intron 2 of 7) (TC)n|Simple_repeat|Simple_repeat 117414 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 242-341 chr6 39807713 39807923 + 2 NA intron (NM_015345, intron 1 of 24) intron (NM_015345, intron 1 of 24) 14821 NM_015345 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 570-21 chr10 18280325 18280722 + 2 NA intron (NM_000724, intron 1 of 12) intron (NM_000724, intron 1 of 12) 19801 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 500-165 chr20 37337797 37338215 + 2 NA Intergenic Intergenic -6679 NM_005417 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 310-494 chr7 108886141 108886309 + 2 NA Intergenic Intergenic -1638 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 298-482 chr8 135134423 135134604 + 2 NA Intergenic Intergenic -99618 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 250-120 chr14 49778153 49778294 + 2 NA exon (NM_014315, exon 5 of 13) exon (NM_014315, exon 5 of 13) 10070 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 254-81 chr12 42536301 42536471 + 2 NA intron (NM_153026, intron 1 of 7) intron (NM_153026, intron 1 of 7) -52376 NM_001144883 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 461-85 chr15 68969110 68969456 + 2 NA intron (NM_001184780, intron 1 of 15) L1M4|LINE|L1 38758 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 197-158 chr4 133810456 133810602 + 2 NA Intergenic L1MC3|LINE|L1 391260 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 156-90 chr6 56117317 56117434 + 2 NA intron (NR_134851, intron 16 of 29) L1MA1|LINE|L1 -25713 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 372-283 chr20 32323203 32323568 + 2 NA intron (NM_004798, intron 5 of 8) intron (NM_004798, intron 5 of 8) -34959 NM_015338 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 447-120 chr2 32274480 32274888 + 2 NA Intergenic L2b|LINE|L2 -3220 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 387-397 chr9 93723320 93723543 + 2 NA Intergenic L2b|LINE|L2 -95926 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 479-12 chr1 171724599 171724926 + 2 NA intron (NM_003762, intron 3 of 7) L1ME1|LINE|L1 17303 NR_033704 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 186-32 chr12 24819863 24820030 + 2 NA intron (NM_001178091, intron 9 of 9) intron (NM_001178091, intron 9 of 9) 82276 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 324-34 chr1 189872867 189873086 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 603034 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 463-314 chrX 23556265 23556497 + 2 NA Intergenic Intergenic -111112 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 582-29 chr12 46567516 46567883 + 2 NA intron (NR_125380, intron 3 of 3) L1MA5A|LINE|L1 183592 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 298-446 chr7 143989874 143990074 + 2 NA Intergenic L2|LINE|L2 -14023 NM_001005281 135946 Hs.632031 NM_001005281 ENSG00000221813 OR6B1 OR7-3|OR7-9 olfactory receptor family 6 subfamily B member 1 protein-coding 223-45 chr10 122786121 122786259 + 2 NA intron (NR_003570, intron 21 of 27) intron (NR_003570, intron 21 of 27) 29496 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 465-43 chr11 21322196 21322565 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 652794 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 432-21 chr1 217509762 217510184 + 2 NA intron (NM_018040, intron 6 of 9) intron (NM_018040, intron 6 of 9) 121117 NM_001297754 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 410-191 chr3 65804466 65804847 + 2 NA intron (NM_001365904, intron 1 of 24) MER57B1|LTR|ERV1 -89160 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 255-371 chr6 156086000 156086163 + 2 NA Intergenic L1ME1|LINE|L1 139284 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 329-67 chr10 83658990 83659252 + 2 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat 17968 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 531-181 chr4 71040152 71040523 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 46688 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 274-262 chr3 74678213 74678432 + 2 NA Intergenic Intergenic -157182 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 305-451 chr5 131247157 131247362 + 2 NA Intergenic L1ME3F|LINE|L1 -16750 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 462-26 chr10 46516992 46517372 + 2 NA Intergenic Intergenic 38889 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 312-568 chrX 128953077 128953343 + 2 NA Intergenic Intergenic 570280 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 365-126 chr14 82417828 82418095 + 2 NA Intergenic L1PA16|LINE|L1 -224671 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 212-85 chr12 72874698 72874874 + 2 NA Intergenic L1MB3|LINE|L1 -284404 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 410-328 chr9 9303533 9303782 + 2 NA intron (NM_002839, intron 9 of 45) MamRTE1|LINE|RTE-BovB 445639 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 302-367 chr6 14503631 14503850 + 2 NA Intergenic Intergenic -218286 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 447-23 chr10 51287988 51288350 + 2 NA intron (NM_001098512, intron 2 of 17) L1PA3|LINE|L1 -11404 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 392-302 chr7 33069265 33069466 + 2 NA Intergenic AluSx|SINE|Alu -6568 NM_001002009 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 365-128 chr15 24986661 24986865 + 2 NA promoter-TSS (NR_001292) promoter-TSS (NR_001292) -162 NR_001292 338427 NR_001292 ENSG00000239014 SNORD108 HBII-437 small nucleolar RNA, C/D box 108 snoRNA 309-42 chr10 30506672 30506845 + 2 NA Intergenic Intergenic 72112 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 318-371 chr3 135508370 135508598 + 2 NA Intergenic L1ME1|LINE|L1 -457244 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 178-80 chr21 28397165 28397309 + 2 NA Intergenic Intergenic -142081 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 332-383 chr4 92070336 92070585 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 206842 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 235-393 chr9 89978067 89978260 + 2 NA intron (NR_109791, intron 1 of 2) intron (NR_109791, intron 1 of 2) 8747 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 276-310 chr3 162759756 162760023 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 543412 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 205-133 chr2 22457590 22457740 + 2 NA Intergenic Intergenic -78814 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 385-274 chr4 80638550 80638829 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 302969 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 160-31 chr14 89623155 89623289 + 2 NA Intergenic MLT2B4|LTR|ERVL -4057 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 501-199 chr5 119699 120030 + 2 NA intron (NM_052909, intron 2 of 19) intron (NM_052909, intron 2 of 19) 27696 NM_052909 153478 Hs.535800 NM_052909 ENSG00000153404 PLEKHG4B - pleckstrin homology and RhoGEF domain containing G4B protein-coding 247-435 chr9 104273331 104273536 + 2 NA intron (NR_135141, intron 1 of 3) L1MEd|LINE|L1 3204 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 257-235 chr20 42399413 42399586 + 2 NA intron (NM_133170, intron 9 of 31) MER5B|DNA|hAT-Charlie -285984 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 423-208 chr4 156743526 156743759 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 228157 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 368-208 chr18 37763810 37764049 + 2 NA Intergenic Intergenic 106794 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 230-78 chr12 20992729 20992879 + 2 NA intron (NM_001371097, intron 13 of 15) L1M5|LINE|L1 -22892 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 232-170 chr2 58270706 58270876 + 2 NA Intergenic Intergenic -5086 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 274-237 chr20 43158211 43158411 + 2 NA intron (NM_133170, intron 1 of 31) L2a|LINE|L2 31595 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 333-460 chr5 94555211 94555426 + 2 NA intron (NM_001145678, intron 2 of 20) intron (NM_001145678, intron 2 of 20) 63286 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 206-96 chr18 4785804 4785968 + 2 NA Intergenic L1MA9|LINE|L1 -295296 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 279-78 chr12 30326669 30326862 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 350479 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 226-45 chr10 81836293 81836479 + 2 NA Intergenic Intergenic -38808 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 318-270 chr2 76538404 76538631 + 2 NA Intergenic L1MDa|LINE|L1 -447448 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 299-147 chr15 36140914 36141087 + 2 NA Intergenic L1ME2|LINE|L1 214144 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 295-139 chr14 83951195 83951427 + 2 NA Intergenic L1MA4A|LINE|L1 1308679 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 334-56 chr10 56713248 56713514 + 2 NA Intergenic Intergenic -352108 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 321-396 chr3 176148328 176148621 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -96077 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 396-348 chr8 60002445 60002757 + 2 NA Intergenic L1PA6|LINE|L1 278799 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 259-373 chr7 80951511 80951723 + 2 NA Intergenic Intergenic -29228 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 439-75 chr12 80209326 80209625 + 2 NA promoter-TSS (NM_173591) promoter-TSS (NM_173591) 22 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 685-62 chr20 58204788 58205337 + 2 NA Intergenic L2|LINE|L2 23591 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 443-10 chr1 82196177 82196555 + 2 NA Intergenic Intergenic 393913 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 412-264 chr5 118635175 118635499 + 2 NA Intergenic L1MA3|LINE|L1 39149 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 546-109 chr2 105969531 105969909 + 2 NA Intergenic Intergenic -95968 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 822-59 chr8 59715871 59716486 + 2 NA Intergenic L2b|LINE|L2 565222 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 332-114 chr12 14240577 14240751 + 2 NA Intergenic L2|LINE|L2 -124968 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 267-22 chr1 158588518 158588682 + 2 NA Intergenic Intergenic -8701 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 323-338 chr3 107223432 107223742 + 2 NA intron (NR_028303, intron 1 of 3) L1MB3|LINE|L1 17051 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 244-8 chr1 62919106 62919268 + 2 NA Intergenic Intergenic 91738 NR_146607 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 294-230 chr2 125054186 125054471 + 2 NA Intergenic Intergenic 1029041 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 162-98 chr4 79439482 79439615 + 2 NA Intergenic L1MA8|LINE|L1 -31320 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 156-26 chr12 37848075 37848201 + 2 NA Intergenic ALR/Alpha|Satellite|centr -468636 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 270-354 chr7 30854390 30854631 + 2 NA intron (NR_037598, intron 14 of 19) intron (NR_037598, intron 14 of 19) -57184 NM_198098 358 Hs.76152 NM_000385 ENSG00000240583 AQP1 AQP-CHIP|CHIP28|CO aquaporin 1 (Colton blood group) protein-coding 273-420 chr7 27915839 27916011 + 2 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) 175830 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 125-14 chr12 74344922 74345015 + 2 NA Intergenic Intergenic -52337 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 730-32 chr2 123037975 123038419 + 2 NA Intergenic Intergenic 35284 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 153-38 chr16 58614356 58614485 + 2 NA intron (NM_206999, intron 1 of 30) MER68|LTR|ERVL 15406 NM_001265612 23019 Hs.460923 NM_016284 ENSG00000125107 CNOT1 AD-005|CDC39|NOT1|NOT1H CCR4-NOT transcription complex subunit 1 protein-coding 410-81 chr13 85496114 85496398 + 2 NA intron (NR_046989, intron 1 of 3) AluSg4|SINE|Alu 132653 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 308-504 chr8 114744234 114744525 + 2 NA Intergenic Intergenic 923634 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 369-129 chr15 27152484 27152693 + 2 NA intron (NM_001270873, intron 3 of 5) L1MD1|LINE|L1 8731 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 229-117 chr14 80251004 80251220 + 2 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -20055 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 323-78 chr11 30236216 30236471 + 2 NA Intergenic MIRb|SINE|MIR 5329 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 237-231 chr3 29439942 29440173 + 2 NA intron (NM_001003792, intron 2 of 13) intron (NM_001003792, intron 2 of 13) 158745 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 378-392 chr7 23843245 23843468 + 2 NA Intergenic L1PBa|LINE|L1 133137 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 227-157 chr2 5776835 5777054 + 2 NA Intergenic Intergenic 35652 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 285-57 chr11 22988839 22989055 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -128473 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 386-315 chr6 166697760 166697970 + 2 NA intron (NM_001006932, intron 2 of 21) L2a|LINE|L2 -70614 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 304-4 chr1 41756665 41756930 + 2 NA intron (NM_024503, intron 1 of 8) L2a|LINE|L2 162125 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 167-25 chr11 12292245 12292393 + 2 NA intron (NM_032867, intron 2 of 8) intron (NM_032867, intron 2 of 8) 5419 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 543-70 chr13 36282842 36283304 + 2 NA intron (NM_001198910, intron 2 of 15) intron (NM_001198910, intron 2 of 15) 14741 NM_001144984 728591 Hs.656745 NM_001144981 ENSG00000242715 CCDC169 C13orf38 coiled-coil domain containing 169 protein-coding 232-413 chrX 76107482 76107673 + 2 NA Intergenic Intergenic -65352 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 131-24 chr14 69979570 69979673 + 2 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 1488 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 252-345 chr5 110430468 110430625 + 2 NA intron (NM_001039763, intron 12 of 13) intron (NM_001039763, intron 12 of 13) 83369 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 303-116 chr14 30571940 30572188 + 2 NA intron (NR_151720, intron 2 of 3) L1M5|LINE|L1 5293 NR_151720 105370431 Hs.603980 NR_151720 ENSG00000257636 G2E3-AS1 CAT1647 G2E3 antisense RNA 1 ncRNA 330-517 chr8 83882398 83882678 + 2 NA Intergenic Intergenic -300249 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 295-491 chr9 28081917 28082110 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -508147 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 271-421 chr8 10117301 10117513 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 21756 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 385-292 chr5 28010414 28010714 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 277101 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 281-45 chr10 83030621 83030842 + 2 NA Intergenic Intergenic 646358 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 324-401 chr4 108840981 108841250 + 2 NA intron (NM_001256074, intron 27 of 31) intron (NM_001256074, intron 27 of 31) -78062 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 415-270 chr8 15524182 15524577 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -15708 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 157-36 chr14 35773576 35773682 + 2 NA intron (NM_014990, intron 3 of 40) intron (NM_014990, intron 3 of 40) -10698 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 309-586 chrX 98932973 98933219 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -1368561 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 299-461 chr8 117091463 117091654 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -43437 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 351-496 chr8 126689365 126689629 + 2 NA Intergenic Intergenic -131019 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 328-38 chr1 229081936 229082137 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 92765 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 127-76 chr8 16849589 16849685 + 2 NA Intergenic Intergenic 152708 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 299-354 chr5 18001632 18001907 + 2 NA Intergenic Intergenic 194495 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 315-439 chr7 39187678 39187902 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) 141344 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 202-34 chr10 97978701 97978865 + 2 NA intron (NM_001206528, intron 2 of 14) L2b|LINE|L2 51838 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 263-404 chr7 124222536 124222736 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 129460 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 246-224 chr2 235223575 235223764 + 2 NA Intergenic L1ME3G|LINE|L1 195934 NM_001371306 508-85 chr18 44155882 44156216 + 2 NA Intergenic Intergenic 375648 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 198-216 chr6 61742408 61742559 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 168353 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 283-105 chr12 70393781 70394055 + 2 NA intron (NM_014505, intron 1 of 2) L2c|LINE|L2 27628 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 479-170 chr4 95710214 95710631 + 2 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -129671 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 296-161 chr15 79042068 79042322 + 2 NA intron (NM_001145648, intron 5 of 26) intron (NM_001145648, intron 5 of 26) -36535 NM_153815 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 267-212 chr2 153663092 153663303 + 2 NA Intergenic Intergenic -184435 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 357-35 chr10 61436650 61436930 + 2 NA intron (NR_134508, intron 1 of 6) intron (NR_134508, intron 1 of 6) -15849 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 585-124 chr5 31760300 31760798 + 2 NA intron (NM_178140, intron 1 of 24) L2a|LINE|L2 121418 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 610-58 chr15 81686316 81686657 + 2 NA Intergenic L1MC1|LINE|L1 -312273 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 485-156 chr2 195067055 195067423 + 2 NA Intergenic Intergenic 336644 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 391-268 chr4 135442038 135442400 + 2 NA Intergenic L1MA6|LINE|L1 -318660 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 393-220 chr3 82814009 82814217 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 827971 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 302-200 chr2 21845232 21845469 + 2 NA Intergenic Intergenic -134698 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 303-198 chr2 22932753 22932949 + 2 NA Intergenic Intergenic 396372 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 433-50 chr11 82379423 82379805 + 2 NA intron (NR_120571, intron 1 of 7) L1MA2|LINE|L1 24299 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 285-16 chr1 151804455 151804688 + 2 NA intron (NM_001004432, intron 1 of 1) intron (NM_001004432, intron 1 of 1) 871 NM_001004432 339398 Hs.591477 NM_001004432 ENSG00000213171 LINGO4 DAAT9248|LRRN6D|PRO34002 leucine rich repeat and Ig domain containing 4 protein-coding 210-161 chr21 29582050 29582245 + 2 NA intron (NM_000830, intron 12 of 16) intron (NM_000830, intron 12 of 16) -13893 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 117-5 chr10 91424605 91424674 + 2 NA intron (NM_182765, intron 1 of 20) intron (NM_182765, intron 1 of 20) 14354 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 300-8 chr1 66850276 66850460 + 2 NA intron (NM_024763, intron 7 of 16) L1MDa|LINE|L1 -49109 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 418-115 chr2 72421164 72421375 + 2 NA intron (NM_001321729, intron 18 of 22) intron (NM_001321729, intron 18 of 22) -273407 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 238-77 chr11 114136003 114136204 + 2 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 72892 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 617-101 chr5 5673373 5673946 + 2 NA Intergenic L1M4|LINE|L1 250982 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 251-320 chr5 148568864 148569073 + 2 NA intron (NM_001040172, intron 1 of 5) L1ME3G|LINE|L1 68093 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 592-159 chr7 4674251 4674812 + 2 NA Intergenic L1MC|LINE|L1 -7764 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 285-414 chr8 83593785 83594064 + 2 NA Intergenic Intergenic 190166 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 522-108 chr17 73903103 73903537 + 2 NA Intergenic Intergenic -74783 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 359-163 chr16 6615109 6615324 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -158593 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 397-351 chr9 12590516 12590884 + 2 NA Intergenic Intergenic -102685 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 253-360 chr6 77076329 77076566 + 2 NA Intergenic L1MA4|LINE|L1 387575 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 571-134 chr5 46246559 46246985 + 2 NA Intergenic ALR/Alpha|Satellite|centr -550392 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 441-211 chr5 127690774 127691176 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -12414 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 266-5 chr1 56710235 56710439 + 2 NA 3' UTR (NM_006252, exon 9 of 9) 3' UTR (NM_006252, exon 9 of 9) -65019 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 970-18 chr5 83454341 83454966 + 2 NA Intergenic L1MA9|LINE|L1 -17021 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 329-225 chr18 1236288 1236508 + 2 NA Intergenic L1MB7|LINE|L1 123231 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 315-240 chr2 76759435 76759738 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -226379 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 359-397 chr5 73241934 73242127 + 2 NA Intergenic L1MEd|LINE|L1 -40069 NR_134291 340090 Hs.434311 NR_134291 LOC340090 - uncharacterized LOC340090 ncRNA 360-156 chr16 28270320 28270651 + 2 NA Intergenic AluJb|SINE|Alu -22040 NM_001024401 388228 Hs.97837 NM_001024401 ENSG00000188322 SBK1 SBK SH3 domain binding kinase 1 protein-coding 515-218 chr5 118331075 118331374 + 2 NA Intergenic Intergenic 48650 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 262-155 chr16 48722216 48722370 + 2 NA Intergenic L1P1|LINE|L1 -112113 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 268-291 chr4 119678346 119678604 + 2 NA Intergenic MER3|DNA|hAT-Charlie -49671 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 642-75 chr3 144977708 144978197 + 2 NA Intergenic AluY|SINE|Alu 1004871 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 302-262 chr21 34299194 34299398 + 2 NA Intergenic Intergenic -64728 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 307-417 chr6 39990823 39991077 + 2 NA Intergenic L1PREC2|LINE|L1 -56488 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 268-347 chr6 81629634 81629827 + 2 NA Intergenic L1MEd|LINE|L1 122951 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 281-334 chr4 149627859 149628119 + 2 NA intron (NM_001363507, intron 7 of 13) MLT1D|LTR|ERVL-MaLR 187854 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 328-3 chr1 33090909 33091214 + 2 NA intron (NM_001350399, intron 4 of 10) L1MA8|LINE|L1 8883 NM_001301825 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 345-123 chr12 97191019 97191221 + 2 NA Intergenic Intergenic -271656 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 309-496 chr6 158355426 158355580 + 2 NA intron (NM_020245, intron 1 of 13) intron (NM_020245, intron 1 of 13) 32521 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 390-148 chr17 69211018 69211322 + 2 NA intron (NM_080282, intron 10 of 39) L1P5|LINE|L1 23842 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 192-171 chr5 156677830 156677972 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -172394 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 351-33 chr10 20975631 20975835 + 2 NA intron (NM_001173484, intron 3 of 6) intron (NM_001173484, intron 3 of 6) -78131 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 217-181 chr2 110741444 110741584 + 2 NA intron (NM_001371254, intron 1 of 18) intron (NM_001371254, intron 1 of 18) 8941 NM_001371254 459-238 chr5 85869093 85869386 + 2 NA Intergenic Intergenic -413205 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 326-17 chr1 79877852 79878074 + 2 NA Intergenic L1PA15|LINE|L1 -657792 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 549-222 chr9 97425341 97425784 + 2 NA intron (NM_001302884, intron 1 of 15) Tigger3a|DNA|TcMar-Tigger 13466 NM_001302884 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 205-201 chr4 58538012 58538196 + 2 NA Intergenic L1MCa|LINE|L1 -1776 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 342-379 chr5 12999441 12999614 + 2 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 33359 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 341-359 chr3 182316033 182316246 + 2 NA Intergenic L1PA13|LINE|L1 170223 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 830-54 chr8 101922217 101922796 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -61926 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 394-40 chr10 43888392 43888775 + 2 NA intron (NR_038268, intron 4 of 4) intron (NR_038268, intron 4 of 4) -20713 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 290-370 chr5 150944100 150944270 + 2 NA intron (NR_026867, intron 1 of 4) intron (NR_026867, intron 1 of 4) 2399 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 244-128 chr17 53023707 53023911 + 2 NA Intergenic L3|LINE|CR1 38304 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 485-225 chr5 57904775 57905102 + 2 NA Intergenic L1PA14|LINE|L1 -5776 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 528-245 chr8 43685914 43686399 + 2 NA Intergenic ALR/Alpha|Satellite|centr 393714 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 381-139 chr17 54753257 54753622 + 2 NA Intergenic Intergenic -147252 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 381-343 chr6 149263389 149263708 + 2 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) -5997 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 228-37 chr10 54221170 54221357 + 2 NA intron (NM_001354411, intron 9 of 34) intron (NM_001354411, intron 9 of 34) -264967 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 328-22 chr1 169266275 169266467 + 2 NA intron (NR_104229, intron 7 of 12) L1PREC2|LINE|L1 101426 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 321-47 chr10 16860573 16860745 + 2 NA intron (NM_001081, intron 59 of 66) L2|LINE|L2 -43205 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 319-447 chr6 14847396 14847569 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -398587 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 371-357 chr7 29342716 29343039 + 2 NA intron (NM_001293070, intron 2 of 13) L2b|LINE|L2 -133907 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 272-300 chr4 43485626 43485832 + 2 NA intron (NR_146993, intron 1 of 2) L1MEd|LINE|L1 6814 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 309-550 chr8 96674885 96675103 + 2 NA intron (NM_016134, intron 1 of 7) intron (NM_016134, intron 1 of 7) 29752 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 266-237 chr3 25840324 25840516 + 2 NA Intergenic L1MA9|LINE|L1 33275 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 263-181 chr19 48011919 48012107 + 2 NA intron (NM_022142, intron 2 of 6) intron (NM_022142, intron 2 of 6) 17381 NM_022142 64100 Hs.104894 NM_022142 ENSG00000169393 ELSPBP1 E12|EDDM12|EL149|HE12 epididymal sperm binding protein 1 protein-coding 358-329 chr4 38965692 38965995 + 2 NA TTS (NM_024943) TTS (NM_024943) 66566 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 278-301 chr4 33436142 33436325 + 2 NA Intergenic Intergenic 603660 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 387-205 chr20 43104929 43105138 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 84873 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 613-130 chr8 50309208 50309631 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 145288 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 349-50 chr10 30801603 30801812 + 2 NA Intergenic L1M5|LINE|L1 78488 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 373-90 chr12 52623970 52624287 + 2 NA Intergenic L1MD1|LINE|L1 -5569 NM_175068 319101 Hs.55410 NM_175068 ENSG00000186049 KRT73 IRT6IRS3|K6IRS3|KRT6IRS3 keratin 73 protein-coding 265-252 chr3 183593553 183593761 + 2 NA Intergenic LTR39|LTR|ERV1 -37951 NM_130446 89857 Hs.659147 NM_130446 ENSG00000172578 KLHL6 - kelch like family member 6 protein-coding 175-128 chr5 39512508 39512658 + 2 NA Intergenic Intergenic -7848 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 324-330 chr22 28123872 28124111 + 2 NA intron (NM_001145418, intron 6 of 22) AluSz|SINE|Alu -203379 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 300-200 chr2 98627981 98628218 + 2 NA intron (NM_001160154, intron 11 of 12) Cheshire|DNA|hAT-Charlie 19510 NM_001330353 25972 Hs.13370 NM_014044 ENSG00000115446 UNC50 GMH1|HSD23|PDLs22|UNCL|URP unc-50 inner nuclear membrane RNA binding protein protein-coding 345-288 chr2 152554783 152555073 + 2 NA intron (NM_052905, intron 4 of 25) Charlie1a|DNA|hAT-Charlie 162533 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 316-63 chr10 35734550 35734746 + 2 NA Intergenic L1MB7|LINE|L1 -43654 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 563-5 chr1 81782228 81782616 + 2 NA intron (NM_001366008, intron 4 of 26) intron (NM_001366008, intron 4 of 26) -17954 NM_001350699 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 322-289 chr20 21789512 21789697 + 2 NA Intergenic Intergenic 83940 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 270-231 chr3 13819667 13819826 + 2 NA intron (NM_004625, intron 3 of 3) L1ME3|LINE|L1 60325 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 436-235 chr5 26340093 26340427 + 2 NA Intergenic Intergenic 698326 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 237-82 chr12 82032859 82033041 + 2 NA Intergenic Intergenic 79231 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 293-237 chr21 21086888 21087118 + 2 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) -60159 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 371-33 chr1 246963347 246963569 + 2 NA intron (NR_037892, intron 5 of 5) L2a|LINE|L2 -31510 NM_001323343 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 174-117 chr5 149100038 149100174 + 2 NA intron (NR_122044, intron 2 of 2) L1M2|LINE|L1 36789 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 353-312 chr3 10866611 10866928 + 2 NA intron (NM_014229, intron 5 of 13) intron (NM_014229, intron 5 of 13) 50541 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 291-35 chr1 219494145 219494364 + 2 NA intron (NR_135822, intron 1 of 3) MER58A|DNA|hAT-Charlie 63070 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 456-306 chr7 126456337 126456631 + 2 NA intron (NM_001371085, intron 9 of 10) L1MEg|LINE|L1 601700 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 463-4 chr1 36384524 36384820 + 2 NA intron (NM_032017, intron 1 of 11) intron (NM_032017, intron 1 of 11) 1252 NM_001282546 83931 Hs.471768 NM_032017 ENSG00000196182 STK40 SHIK|SgK495 serine/threonine kinase 40 protein-coding 538-36 chr11 29881433 29881949 + 2 NA Intergenic LTR8B|LTR|ERV1 100702 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 408-241 chr4 87316463 87316759 + 2 NA intron (NM_178135, intron 3 of 6) intron (NM_178135, intron 3 of 6) 6271 NM_178135 345275 Hs.284414 NM_178135 ENSG00000170509 HSD17B13 HMFN0376|NIIL497|SCDR9|SDR16C3 hydroxysteroid 17-beta dehydrogenase 13 protein-coding 530-248 chr8 46096572 46096965 + 2 NA Intergenic ALR/Alpha|Satellite|centr 520875 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 255-192 chr2 52954270 52954454 + 2 NA Intergenic Intergenic -251747 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 362-230 chr2 147148886 147149149 + 2 NA Intergenic Intergenic 561960 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 282-290 chr3 22512928 22513116 + 2 NA Intergenic L1MA2|LINE|L1 555883 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 329-89 chr11 16469766 16469952 + 2 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) 6529 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 346-347 chr4 38347028 38347217 + 2 NA Intergenic L1MC5a|LINE|L1 -19792 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 342-355 chr4 45392332 45392508 + 2 NA Intergenic Intergenic -665786 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 378-39 chr1 218607110 218607324 + 2 NA intron (NR_031644, intron 3 of 6) L1MA8|LINE|L1 97122 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 265-335 chr6 65404368 65404607 + 2 NA intron (NM_198283, intron 5 of 9) intron (NM_198283, intron 5 of 9) 103069 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 269-367 chr6 168428034 168428237 + 2 NA Intergenic Intergenic -13049 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 385-260 chr4 19036976 19037204 + 2 NA Intergenic Intergenic -1015215 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 249-386 chr7 62934659 62934833 + 2 NA Intergenic ALR/Alpha|Satellite|centr 369310 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 306-254 chr2 146458542 146458710 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -128431 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 242-211 chr20 15690878 15691002 + 2 NA intron (NM_001351663, intron 8 of 17) MIRb|SINE|MIR 232374 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 641-100 chr7 63049205 63049652 + 2 NA Intergenic Intergenic 254628 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 376-78 chr12 16231063 16231292 + 2 NA intron (NM_001170798, intron 5 of 8) intron (NM_001170798, intron 5 of 8) 46508 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 253-7 chr1 69342043 69342218 + 2 NA Intergenic Intergenic -91125 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 127-23 chr12 17273509 17273598 + 2 NA Intergenic Intergenic 284806 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 352-344 chr4 10823277 10823597 + 2 NA Intergenic L1ME2z|LINE|L1 -138669 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 135-38 chr20 22160782 22160867 + 2 NA Intergenic Charlie17|DNA|hAT-Charlie 106734 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 342-40 chr1 197407077 197407377 + 2 NA intron (NM_001193640, intron 3 of 9) intron (NM_001193640, intron 3 of 9) 138975 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 333-459 chr5 91978838 91979096 + 2 NA Intergenic Intergenic -595650 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 346-539 chrX 63453113 63453445 + 2 NA intron (NR_152612, intron 1 of 2) L1PA14|LINE|L1 -101947 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 298-506 chr9 104244855 104245139 + 2 NA Intergenic L2a|LINE|L2 -25232 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 216-337 chr8 104626650 104626808 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -37705 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 451-44 chr12 23246608 23246959 + 2 NA Intergenic L1ME2|LINE|L1 71147 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 195-135 chr22 34575063 34575246 + 2 NA Intergenic L1MC3|LINE|L1 422762 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 534-45 chr11 54853460 54853829 + 2 NA Intergenic ALR/Alpha|Satellite|centr 146812 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 201-124 chr2 114114803 114114963 + 2 NA Intergenic Intergenic -134899 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 350-498 chr7 143984911 143985132 + 2 NA Intergenic Intergenic -18976 NM_001005281 135946 Hs.632031 NM_001005281 ENSG00000221813 OR6B1 OR7-3|OR7-9 olfactory receptor family 6 subfamily B member 1 protein-coding 719-57 chr4 100144293 100144982 + 2 NA Intergenic AluSz|SINE|Alu -45396 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 780-30 chr2 188052761 188053263 + 2 NA intron (NR_126396, intron 2 of 2) L1MEf|LINE|L1 234679 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 305-556 chr9 3131099 3131303 + 2 NA Intergenic L2c|LINE|L2 -50388 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 458-238 chr7 63145080 63145456 + 2 NA Intergenic L1PB4|LINE|L1 158788 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 224-83 chr14 48643793 48643954 + 2 NA Intergenic Intergenic -848859 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 275-354 chr8 34818160 34818409 + 2 NA intron (NR_125746, intron 2 of 3) MLT1C|LTR|ERVL-MaLR 34363 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 320-597 chr9 106025517 106025787 + 2 NA Intergenic Intergenic 331111 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 342-250 chr2 125041904 125042094 + 2 NA Intergenic Intergenic 1016712 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 429-85 chr13 88905076 88905429 + 2 NA Intergenic L1MDa|LINE|L1 278399 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 369-65 chr11 92647148 92647484 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 268312 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 524-282 chr9 88700575 88700926 + 2 NA Intergenic Intergenic 45155 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 270-173 chr19 58251667 58251856 + 2 NA TTS (NM_001320780) TTS (NM_001320780) 22847 NM_001320787 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 330-71 chr10 111117640 111117811 + 2 NA intron (NR_159949, intron 2 of 2) intron (NR_159949, intron 2 of 2) 3434 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 705-57 chr2 204598477 204599032 + 2 NA intron (NM_205863, intron 1 of 21) L1ME4a|LINE|L1 53279 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 490-147 chr2 82301648 82301959 + 2 NA Intergenic AluSz6|SINE|Alu -555000 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 163-54 chr16 77607539 77607634 + 2 NA Intergenic Intergenic -114906 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 266-426 chr8 108116216 108116381 + 2 NA Intergenic Intergenic -32678 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 325-545 chr8 117351372 117351549 + 2 NA Intergenic L1MA9|LINE|L1 -169253 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 462-117 chr18 62308051 62308420 + 2 NA non-coding (NR_144410, exon 30 of 30) non-coding (NR_144410, exon 30 of 30) -17052 NM_001270949 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 371-138 chr16 75237062 75237389 + 2 NA exon (NM_001170714, exon 4 of 8) exon (NM_001170714, exon 4 of 8) 1435 NM_001170721 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 371-231 chr21 31276219 31276542 + 2 NA intron (NM_001353688, intron 4 of 29) intron (NM_001353688, intron 4 of 29) 67974 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 269-126 chr14 101391455 101391610 + 2 NA Intergenic L1PA8|LINE|L1 16390 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 316-101 chr11 58732715 58733003 + 2 NA promoter-TSS (NM_005838) promoter-TSS (NM_005838) -885 NM_005838 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 212-204 chr3 24050907 24051054 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 52267 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 244-239 chr3 149138898 149139062 + 2 NA intron (NM_001308258, intron 1 of 15) L1ME3G|LINE|L1 9342 NM_032383 84343 Hs.558314 NM_032383 ENSG00000163755 HPS3 BLOC2S1|SUTAL HPS3 biogenesis of lysosomal organelles complex 2 subunit 1 protein-coding 435-265 chr9 91931943 91932197 + 2 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 18158 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 235-304 chr6 54312524 54312711 + 2 NA intron (NM_014464, intron 1 of 10) L1M5|LINE|L1 4176 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 221-39 chr10 77471720 77471901 + 2 NA intron (NM_001271519, intron 1 of 28) (AC)n|Simple_repeat|Simple_repeat 120938 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 293-95 chr12 125450974 125451151 + 2 NA intron (NM_052907, intron 3 of 8) L1MC4|LINE|L1 124446 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 1022-9 chr12 127780839 127781793 + 2 NA Intergenic MIR|SINE|MIR -100301 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 389-391 chrX 33875418 33875749 + 2 NA Intergenic Intergenic 256747 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 427-233 chr6 153345854 153346113 + 2 NA Intergenic L1MEd|LINE|L1 -214701 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 641-68 chr2 217079621 217080204 + 2 NA Intergenic Intergenic -202821 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 253-149 chr16 52693368 52693614 + 2 NA Intergenic Intergenic -86516 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 405-191 chr22 26108724 26109059 + 2 NA Intergenic Intergenic -60571 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 344-324 chr3 106231835 106232129 + 2 NA Intergenic L1PREC2|LINE|L1 -362581 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 375-383 chr7 63087813 63088079 + 2 NA Intergenic Intergenic 216110 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 326-158 chr14 87476097 87476391 + 2 NA Intergenic Intergenic 179050 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 664-88 chr5 99951660 99952172 + 2 NA Intergenic LTR16B1|LTR|ERVL 417926 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 326-567 chr9 27598185 27598496 + 2 NA Intergenic Intergenic -24474 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 311-372 chr4 44361234 44361443 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 87471 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 345-112 chr12 20104600 20104822 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 23190 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 622-146 chr8 135996329 135996768 + 2 NA Intergenic Intergenic -534250 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 329-136 chr12 126145071 126145392 + 2 NA Intergenic Intergenic 49239 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 171-58 chr2 118124153 118124316 + 2 NA Intergenic Intergenic 35684 NM_001321332 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 273-103 chr12 39059712 39059979 + 2 NA Intergenic Intergenic -154254 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 358-193 chr2 27569541 27569835 + 2 NA Intergenic Intergenic -6834 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 572-53 chr14 58607923 58608384 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -25915 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 353-346 chr3 174072877 174073093 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -152189 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 249-26 chr1 186942837 186942999 + 2 NA intron (NM_024420, intron 10 of 17) intron (NM_024420, intron 10 of 17) 113969 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 329-523 chr7 7410490 7410666 + 2 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 125295 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 400-79 chr13 90342538 90342904 + 2 NA Intergenic L1MA4|LINE|L1 111539 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 224-189 chr3 5445453 5445638 + 2 NA Intergenic L1M4|LINE|L1 -195290 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 279-64 chr11 13528477 13528637 + 2 NA Intergenic Intergenic -32382 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 534-250 chr8 61581981 61582440 + 2 NA intron (NM_004318, intron 15 of 24) intron (NM_004318, intron 15 of 24) 107601 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 293-395 chr7 28674327 28674506 + 2 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -11717 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 240-42 chr10 39002908 39003086 + 2 NA Intergenic ALR/Alpha|Satellite|centr 306401 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 371-228 chr21 19095215 19095549 + 2 NA Intergenic LTR52|LTR|ERVL -335570 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 544-114 chr2 65734343 65734678 + 2 NA Intergenic L1PA8A|LINE|L1 -301911 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 277-135 chr16 47977973 47978207 + 2 NA Intergenic Intergenic 12401 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 448-127 chr2 156759626 156760018 + 2 NA Intergenic L1PREC2|LINE|L1 323443 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 421-211 chr4 55029466 55029816 + 2 NA Intergenic L1ME3E|LINE|L1 95954 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 441-57 chr12 60440157 60440507 + 2 NA Intergenic L1MB4|LINE|L1 750962 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 212-269 chr5 148930809 148930979 + 2 NA Intergenic Intergenic 104301 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 223-132 chr19 10182928 10183098 + 2 NA intron (NM_001379, intron 1 of 39) (TA)n|Simple_repeat|Simple_repeat 11940 NM_001318730 1786 Hs.202672 NM_001379 ENSG00000130816 DNMT1 ADCADN|AIM|CXXC9|DNMT|HSN1E|MCMT|m.HsaI DNA methyltransferase 1 protein-coding 395-239 chr3 180113872 180114160 + 2 NA Intergenic Intergenic -77079 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 424-217 chr5 36489053 36489433 + 2 NA Intergenic Intergenic -117112 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 191-2 chr1 40251951 40252099 + 2 NA TTS (NM_001008740) TTS (NM_001008740) 4088 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 571-195 chrX 110763694 110764091 + 2 NA intron (NR_159734, intron 2 of 12) L1PB1|LINE|L1 31925 NM_001367208 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 250-283 chr3 88371964 88372157 + 2 NA intron (NM_001368167, intron 2 of 2) L1M4a1|LINE|L1 33604 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 243-103 chr12 103788597 103788784 + 2 NA intron (NM_001031701, intron 10 of 13) intron (NM_001031701, intron 10 of 13) 52544 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 462-123 chr19 32721959 32722360 + 2 NA intron (NM_001366102, intron 1 of 32) intron (NM_001366102, intron 1 of 32) 2392 NM_001110822 91646 Hs.646351 NM_001015890 ENSG00000173809 TDRD12 ECAT8 tudor domain containing 12 protein-coding 185-129 chr22 33420240 33420377 + 2 NA intron (NM_133642, intron 7 of 14) 5S|rRNA|rRNA 16361 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 527-178 chr3 104066188 104066534 + 2 NA Intergenic Intergenic -542245 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 175-176 chr8 138466777 138466929 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 30408 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 504-219 chr5 152201479 152201831 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 203624 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 736-53 chr3 40984118 40984622 + 2 NA Intergenic Intergenic -215135 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 316-245 chr2 10763293 10763555 + 2 NA intron (NM_001039362, intron 4 of 13) intron (NM_001039362, intron 4 of 13) 41794 NM_001039362 245973 Hs.580464 NM_144583 ENSG00000143882 ATP6V1C2 ATP6C2|VMA5 ATPase H+ transporting V1 subunit C2 protein-coding 313-544 chr8 135257609 135257792 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 23569 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 298-50 chr10 65237734 65237883 + 2 NA Intergenic L1M5|LINE|L1 -313290 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 610-174 chr8 125124621 125125086 + 2 NA intron (NM_001349486, intron 3 of 7) AluSx1|SINE|Alu 32993 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 338-404 chr5 4214946 4215226 + 2 NA Intergenic Intergenic -558395 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 518-214 chr4 120456476 120456835 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -389807 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 282-80 chr11 123790091 123790285 + 2 NA Intergenic MER4-int|LTR|ERV1 16161 NM_001005325 390261 Hs.557924 NM_001005325 ENSG00000196099 OR6M1 OR11-271 olfactory receptor family 6 subfamily M member 1 protein-coding 590-21 chr11 14956213 14956611 + 2 NA Intergenic Intergenic 15874 NM_001033953 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 325-441 chr5 52131746 52131986 + 2 NA Intergenic Intergenic 123835 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 224-183 chr21 33955405 33955624 + 2 NA intron (NR_134558, intron 2 of 2) AluSx1|SINE|Alu -20868 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 319-93 chr11 82103538 82103758 + 2 NA intron (NR_120571, intron 3 of 7) L1MC1|LINE|L1 -212812 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 343-159 chr15 57677357 57677667 + 2 NA intron (NM_001018091, intron 12 of 12) intron (NM_001018091, intron 12 of 12) -29009 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 359-497 chr8 137781862 137782194 + 2 NA Intergenic Intergenic 301517 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 165-116 chr6 147142514 147142621 + 2 NA intron (NR_034115, intron 3 of 10) intron (NR_034115, intron 3 of 10) -16358 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 273-305 chr3 162999317 162999544 + 2 NA Intergenic Intergenic 303871 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 531-133 chr20 6999768 7000169 + 2 NA Intergenic Intergenic 232282 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 694-127 chr8 57758814 57759310 + 2 NA Intergenic L1PA13|LINE|L1 12913 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 148-41 chr2 53306771 53306900 + 2 NA Intergenic Intergenic -460948 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 408-280 chr5 136731201 136731544 + 2 NA Intergenic Intergenic -365896 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 213-88 chr14 64622709 64622883 + 2 NA Intergenic Intergenic 72835 NM_172365 145376 Hs.144696 NM_172365 ENSG00000165807 PPP1R36 C14orf50 protein phosphatase 1 regulatory subunit 36 protein-coding 192-162 chr5 63538452 63538570 + 2 NA Intergenic Intergenic 423781 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 489-189 chr4 46501532 46501871 + 2 NA Intergenic Intergenic -111573 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 242-68 chr12 17588184 17588397 + 2 NA intron (NR_146522, intron 1 of 4) intron (NR_146522, intron 1 of 4) 788 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 278-79 chr12 102977343 102977585 + 2 NA Intergenic Intergenic -19023 NM_001354304 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 396-203 chr21 31014089 31014336 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 24264 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 487-268 chr7 42374281 42374594 + 2 NA Intergenic L1ME3|LINE|L1 -137228 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 208-58 chr12 55631351 55631517 + 2 NA Intergenic Intergenic -5458 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 207-144 chr2 112184551 112184755 + 2 NA intron (NM_001128165, intron 5 of 6) (TA)n|Simple_repeat|Simple_repeat 46268 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 345-312 chr20 59792335 59792510 + 2 NA intron (NM_080672, intron 7 of 12) L1M5|LINE|L1 71212 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 169-102 chr5 123683373 123683485 + 2 NA Intergenic L1MD1|LINE|L1 138012 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 302-236 chr2 175901335 175901567 + 2 NA Intergenic Intergenic 100816 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 663-106 chr7 50526629 50527165 + 2 NA intron (NM_001242889, intron 4 of 12) L1MEg|LINE|L1 -4862 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 437-217 chr5 31876839 31877147 + 2 NA intron (NM_178140, intron 2 of 24) MIR|SINE|MIR 59166 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 244-163 chr2 70884707 70884877 + 2 NA Intergenic L1MC4|LINE|L1 -3079 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 328-419 chr4 117741152 117741355 + 2 NA Intergenic L1ME3A|LINE|L1 -93148 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 287-68 chr10 88386418 88386570 + 2 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 196824 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 354-507 chrX 47968090 47968382 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 35753 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 841-45 chr9 31126416 31126901 + 2 NA Intergenic L1M3|LINE|L1 254832 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 555-80 chr19 56650384 56650749 + 2 NA intron (NR_163263, intron 4 of 4) MIR|SINE|MIR 7407 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 178-70 chr2 122716986 122717096 + 2 NA Intergenic L1PREC2|LINE|L1 356440 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 323-270 chr2 125233479 125233729 + 2 NA Intergenic Intergenic 884381 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 325-585 chrX 78963967 78964167 + 2 NA TTS (NM_001324221) TTS (NM_001324221) 18676 NM_014499 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 383-419 chrX 47114739 47114953 + 2 NA Intergenic L1M1|LINE|L1 30364 NM_001135998 54539 Hs.521969 NM_019056 ENSG00000147123 NDUFB11 CI-ESSS|ESSS|MC1DN30|NP17.3|Np15|P17.3 NADH:ubiquinone oxidoreductase subunit B11 protein-coding 324-209 chr16 76146047 76146332 + 2 NA Intergenic L1MD3|LINE|L1 -131212 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 133-80 chr8 89558375 89558443 + 2 NA Intergenic L2c|LINE|L2 199302 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 495-188 chr4 166210790 166211134 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 337725 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 243-269 chr22 46842422 46842553 + 2 NA intron (NM_001284305, intron 4 of 12) L1ME2z|LINE|L1 68560 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 217-21 chr1 199278264 199278432 + 2 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 129750 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 265-403 chr8 131507621 131507783 + 2 NA Intergenic Intergenic -396391 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 175-17 chr1 207817155 207817303 + 2 NA intron (NR_135299, intron 3 of 5) intron (NR_135299, intron 3 of 5) -1150 NR_026817 148696 Hs.125511 NM_001039568 LOC148696 - uncharacterized LOC148696 ncRNA 371-396 chr8 135107579 135107825 + 2 NA Intergenic L1MA1|LINE|L1 -126429 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 244-54 chr11 58725444 58725648 + 2 NA intron (NM_201648, intron 1 of 5) MER50|LTR|ERV1 6397 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 332-138 chr13 53712349 53712639 + 2 NA Intergenic MIRc|SINE|MIR -102925 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 361-220 chr2 81903709 81903973 + 2 NA Intergenic L1MC3|LINE|L1 -436895 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 505-24 chr1 237870285 237870703 + 2 NA intron (NR_027247, intron 3 of 11) LTR82A|LTR|ERVL 8319 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 242-78 chr12 44139604 44139838 + 2 NA intron (NM_001286212, intron 3 of 6) intron (NM_001286212, intron 3 of 6) 303640 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 132-59 chr5 19941082 19941150 + 2 NA intron (NM_001349562, intron 2 of 13) MLT1A0|LTR|ERVL-MaLR 47084 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 319-418 chr5 85991051 85991248 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -291295 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 518-115 chr18 35535271 35535644 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -37497 NM_194281 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 439-79 chr12 129394928 129395222 + 2 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 186474 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 348-300 chr3 83176315 83176637 + 2 NA Intergenic L1MDa|LINE|L1 1190334 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 274-62 chr11 21444986 21445245 + 2 NA intron (NM_201551, intron 15 of 18) L1M1|LINE|L1 -747970 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 332-421 chr5 85413115 85413393 + 2 NA Intergenic L1PA14|LINE|L1 -869190 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 178-59 chr19 14722050 14722160 + 2 NA TTS (NM_032433) TTS (NM_032433) 32057 NM_001352244 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 308-295 chr3 70309446 70309663 + 2 NA intron (NM_001364676, intron 2 of 4) MIRb|SINE|MIR 3084 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 364-409 chr7 31034688 31035043 + 2 NA Intergenic Intergenic -17443 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 461-153 chr20 14887102 14887392 + 2 NA intron (NR_110318, intron 1 of 1) intron (NR_110318, intron 1 of 1) 42271 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 139-46 chr2 181343480 181343594 + 2 NA intron (NR_130784, intron 3 of 4) L2b|LINE|L2 -37885 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 265-369 chr7 104597190 104597379 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 206808 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 546-38 chr11 54911566 54911943 + 2 NA Intergenic ALR/Alpha|Satellite|centr 204922 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 513-87 chr15 63954835 63955287 + 2 NA intron (NM_014326, intron 4 of 11) L1MA3|LINE|L1 26787 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 252-234 chr21 10667054 10667229 + 2 NA Intergenic (TCCATTCCAT)n|Simple_repeat|Simple_repeat 145627 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 232-33 chr10 60404105 60404278 + 2 NA intron (NM_001204403, intron 2 of 43) L1ME2z|LINE|L1 -14316 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 524-177 chr4 73995008 73995372 + 2 NA TTS (NM_002994) TTS (NM_002994) 3487 NM_002994 6374 Hs.89714 NM_002994 ENSG00000163735 CXCL5 ENA-78|SCYB5 C-X-C motif chemokine ligand 5 protein-coding 320-358 chr3 111145894 111146149 + 2 NA intron (NM_001243288, intron 6 of 8) intron (NM_001243288, intron 6 of 8) 74205 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 244-397 chrX 83405505 83405683 + 2 NA Intergenic Intergenic -102696 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 482-56 chr11 116542151 116542459 + 2 NA Intergenic AluSz|SINE|Alu -97117 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 439-69 chr12 33308060 33308318 + 2 NA Intergenic LTR48|LTR|ERV1 131630 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 248-123 chr14 96464798 96464996 + 2 NA intron (NM_001350892, intron 12 of 15) MER41C|LTR|ERV1 37429 NR_122121 730202 Hs.647565 NR_122121 LOC730202 - uncharacterized LOC730202 ncRNA 273-367 chr5 124373359 124373533 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 65074 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 261-216 chr20 48347108 48347360 + 2 NA Intergenic L1ME2|LINE|L1 -12677 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 381-263 chr4 18351510 18351760 + 2 NA Intergenic L1M3a|LINE|L1 -329760 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 335-483 chr7 3332973 3333243 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 31856 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 269-307 chr5 29874803 29874958 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -5680 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 439-170 chr22 26194172 26194526 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 24875 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 523-12 chr1 173366804 173367143 + 2 NA intron (NR_037845, intron 2 of 2) Arthur1B|DNA|hAT-Tip100 94389 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 289-68 chr10 96716688 96716954 + 2 NA intron (NM_152309, intron 1 of 16) intron (NM_152309, intron 1 of 16) 3693 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 281-160 chr17 53315268 53315440 + 2 NA Intergenic Intergenic 329849 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 170-129 chr7 20083380 20083535 + 2 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 56969 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 578-59 chr14 63068619 63069130 + 2 NA Intergenic L1PB1|LINE|L1 -23416 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 611-136 chr7 53106966 53107389 + 2 NA Intergenic L2a|LINE|L2 71544 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 356-216 chr19 29446072 29446348 + 2 NA intron (NR_040029, intron 1 of 9) AluSx|SINE|Alu 79542 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 131-59 chr4 86647394 86647478 + 2 NA intron (NM_080685, intron 2 of 47) intron (NM_080685, intron 2 of 47) 53121 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 327-164 chr15 27480610 27480892 + 2 NA exon (NM_033223, exon 6 of 10) exon (NM_033223, exon 6 of 10) -319432 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 256-140 chr15 80379648 80379840 + 2 NA Intergenic Intergenic -24638 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 239-299 chr5 8818403 8818596 + 2 NA Intergenic L1MC1|LINE|L1 -21233 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 237-43 chr10 128231923 128232101 + 2 NA Intergenic AluJb|SINE|Alu -53938 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 274-255 chr3 20941176 20941444 + 2 NA Intergenic Intergenic -464416 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 144-104 chr8 136850204 136850342 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 319475 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 724-46 chr22 24783447 24783999 + 2 NA Intergenic Intergenic -9003 NR_045648 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 349-340 chr3 123853743 123853935 + 2 NA intron (NM_001321309, intron 2 of 32) MLT1H|LTR|ERVL-MaLR 30493 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 252-180 chr2 34146166 34146361 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 79037 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 301-363 chr5 105761588 105761763 + 2 NA Intergenic Intergenic 662201 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 428-79 chr15 91322513 91322781 + 2 NA Intergenic L1ME3B|LINE|L1 -140692 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 264-333 chr5 102635815 102636043 + 2 NA intron (NR_103755, intron 1 of 2) intron (NR_103755, intron 1 of 2) 35535 NR_103754 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 535-247 chr8 129979270 129979778 + 2 NA intron (NM_001353245, intron 1 of 13) intron (NM_001353245, intron 1 of 13) 28929 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 224-27 chr10 13092998 13093179 + 2 NA intron (NM_001282658, intron 3 of 6) intron (NM_001282658, intron 3 of 6) 6901 NM_001282658 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 259-426 chr9 8176047 8176296 + 2 NA Intergenic Intergenic -376393 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 244-99 chr14 73436078 73436254 + 2 NA intron (NM_001005743, intron 1 of 12) intron (NM_001005743, intron 1 of 12) 22414 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 408-165 chr2 134031243 134031541 + 2 NA Intergenic L1MD2|LINE|L1 -88543 NM_001371457 586-152 chr8 77389134 77389586 + 2 NA Intergenic Intergenic -61337 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 517-294 chr9 117615879 117616389 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -32472 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 223-206 chr3 55218875 55219024 + 2 NA Intergenic L1MA7|LINE|L1 40777 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 523-108 chr17 75215266 75215742 + 2 NA intron (NM_001303276, intron 4 of 17) AluJr|SINE|Alu 9825 NM_024844 79902 Hs.362817 NM_024844 ENSG00000125450 NUP85 FROUNT|NPHS17|Nup75 nucleoporin 85 protein-coding 505-285 chr7 38734901 38735370 + 2 NA intron (NM_014396, intron 25 of 28) intron (NM_014396, intron 25 of 28) -48046 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 362-66 chr10 61477248 61477585 + 2 NA intron (NR_120643, intron 2 of 5) intron (NR_120643, intron 2 of 5) -2625 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 332-464 chr6 160154835 160155037 + 2 NA intron (NM_003057, intron 9 of 10) intron (NM_003057, intron 9 of 10) 33105 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 353-57 chr10 49314123 49314333 + 2 NA intron (NM_001135196, intron 1 of 2) intron (NM_001135196, intron 1 of 2) 15058 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 495-57 chr12 131586706 131587012 + 2 NA Intergenic MER52A|LTR|ERV1 61262 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 289-404 chr6 8687552 8687729 + 2 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) 35431 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 443-50 chr11 44521552 44521958 + 2 NA Intergenic Intergenic -43908 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 488-165 chr22 27161949 27162422 + 2 NA Intergenic LTR16E1|LTR|ERVL -25331 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 243-111 chr13 76453158 76453315 + 2 NA Intergenic L1MA4|LINE|L1 433169 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 378-229 chr2 71722880 71723145 + 2 NA Intergenic HAL1|LINE|L1 256313 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 248-413 chr8 120390376 120390529 + 2 NA Intergenic L1PB3|LINE|L1 54698 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 415-103 chr17 73529077 73529403 + 2 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 15557 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 331-68 chr10 107354189 107354364 + 2 NA Intergenic L1M3|LINE|L1 -189570 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 255-251 chr3 21346667 21346868 + 2 NA Intergenic Intergenic -58959 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 472-353 chrX 113849719 113850171 + 2 NA intron (NR_131204, intron 1 of 2) MamGypsy2-I|LTR|Gypsy 88273 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 212-17 chr1 176277881 176278042 + 2 NA Intergenic L1MD2|LINE|L1 -70675 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 645-131 chr8 138678617 138679093 + 2 NA intron (NM_152888, intron 40 of 64) MIR3|SINE|MIR -181125 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 787-8 chr12 112735139 112735733 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -40260 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 327-236 chr2 14704288 14704583 + 2 NA Intergenic Intergenic 71718 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 635-70 chr3 195022031 195022541 + 2 NA Intergenic Intergenic -72302 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 489-96 chr16 29935159 29935583 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -9145 NR_110933 253980 Hs.534590 NM_178863 ENSG00000174943 KCTD13 BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1 potassium channel tetramerization domain containing 13 protein-coding 289-79 chr11 39065711 39065868 + 2 NA Intergenic Intergenic 416931 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 249-125 chr15 26634862 26635047 + 2 NA intron (NM_000814, intron 3 of 8) intron (NM_000814, intron 3 of 8) -5864 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 356-13 chr1 87169314 87169619 + 2 NA TTS (NR_026989) TTS (NR_026989) 37540 NR_026987 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 688-58 chr19 24360270 24360777 + 2 NA Intergenic ALR/Alpha|Satellite|centr -197076 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 224-233 chr4 140794282 140794411 + 2 NA Intergenic L1ME3G|LINE|L1 -37961 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 275-210 chr2 180084481 180084643 + 2 NA Intergenic Intergenic -77265 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 214-144 chr19 352684 352864 + 2 NA Intergenic MER33|DNA|hAT-Charlie -7933 NM_001346105 54531 Hs.101891 NM_017550 ENSG00000105556 MIER2 KIAA1193|Mi-er2 MIER family member 2 protein-coding 263-362 chr6 81215327 81215496 + 2 NA Intergenic MER52C|LTR|ERV1 537270 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 286-293 chr3 118044872 118045066 + 2 NA Intergenic L1MA9|LINE|L1 -354044 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 229-252 chr3 99271020 99271191 + 2 NA Intergenic Intergenic -367489 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 267-47 chr10 57351450 57351672 + 2 NA Intergenic L1PA8|LINE|L1 -47002 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 374-3 chr1 45558609 45558902 + 2 NA intron (NM_001202414, intron 3 of 10) AluSx|SINE|Alu 7929 NM_006066 10327 Hs.474584 NM_006066 ENSG00000117448 AKR1A1 ALDR1|ALR|ARM|DD3|HEL-S-6 aldo-keto reductase family 1 member A1 protein-coding 224-204 chr3 95007823 95008006 + 2 NA Intergenic Intergenic 69651 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 296-485 chr8 129236037 129236222 + 2 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 5111 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 243-435 chr7 153052753 153052904 + 2 NA Intergenic Intergenic 293076 NM_020445 57180 Hs.647117 NM_020445 ENSG00000133627 ACTR3B ARP11|ARP3BETA actin related protein 3B protein-coding 496-273 chr7 157913394 157913803 + 2 NA intron (NM_130843, intron 10 of 21) L1ME3E|LINE|L1 59013 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 216-57 chr11 43539554 43539692 + 2 NA Intergenic L1MB4|LINE|L1 -20033 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 293-176 chr2 8280751 8281006 + 2 NA intron (NR_152741, intron 8 of 9) AluSx1|SINE|Alu 47541 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 564-39 chr11 129151679 129152094 + 2 NA intron (NM_001142685, intron 2 of 21) L1PB2|LINE|L1 40312 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 207-281 chr7 146748659 146748852 + 2 NA Intergenic L3|LINE|CR1 -25516 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 252-362 chr6 44212387 44212624 + 2 NA Intergenic L1MA6|LINE|L1 -4421 NM_001347931 101929726 Hs.438979 NM_001315494 ENSG00000262179 MYMX MINION|hMINION myomixer, myoblast fusion factor protein-coding 787-56 chr9 129539460 129539999 + 2 NA Intergenic AluJr|SINE|Alu 51069 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 356-164 chr15 61523251 61523545 + 2 NA Intergenic MIR|SINE|MIR -206520 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 210-272 chr7 96460718 96460894 + 2 NA Intergenic Intergenic 42717 NR_163949 268-302 chr5 8141517 8141772 + 2 NA Intergenic MIRc|SINE|MIR 272496 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 283-206 chr19 27998289 27998500 + 2 NA intron (NR_146733, intron 3 of 6) L1M2|LINE|L1 -204454 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 315-60 chr10 67085688 67085913 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 73534 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 345-130 chr13 37634915 37635210 + 2 NA 3' UTR (NM_016179, exon 11 of 11) 3' UTR (NM_016179, exon 11 of 11) -36218 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 367-468 chr8 136025543 136025785 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -505134 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 502-15 chr1 171330785 171331104 + 2 NA intron (NM_002022, intron 5 of 9) intron (NM_002022, intron 5 of 9) -7952 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 667-17 chr10 130988937 130989595 + 2 NA Intergenic Intergenic -26598 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 186-82 chr2 84768829 84768973 + 2 NA intron (NM_001370, intron 64 of 76) intron (NM_001370, intron 64 of 76) 112183 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 487-211 chr4 66599629 66600060 + 2 NA Intergenic L1MA5|LINE|L1 323020 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 410-142 chr2 104790009 104790404 + 2 NA Intergenic Intergenic -32487 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 251-221 chr22 25137497 25137703 + 2 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -24908 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 287-209 chr2 153917198 153917427 + 2 NA intron (NM_052917, intron 2 of 12) L1ME3|LINE|L1 -27082 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 425-104 chr16 48658867 48659218 + 2 NA Intergenic FAM|SINE|Alu -48862 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 269-388 chr7 81942614 81942793 + 2 NA Intergenic L2c|LINE|L2 -66474 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 256-130 chr14 84890965 84891146 + 2 NA Intergenic Intergenic -380877 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 258-404 chr8 108400278 108400507 + 2 NA Intergenic LTR83|LTR|ERVL -43191 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 155-41 chr15 49903493 49903570 + 2 NA intron (NR_073596, intron 20 of 27) intron (NR_073596, intron 20 of 27) 209848 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 526-197 chr5 68100135 68100524 + 2 NA Intergenic Intergenic -89547 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 519-182 chr5 101177738 101178149 + 2 NA Intergenic Intergenic -274661 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 302-121 chr14 26147324 26147530 + 2 NA Intergenic L1M7|LINE|L1 406003 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 564-170 chr6 40011040 40011395 + 2 NA Intergenic L1MA4|LINE|L1 -76755 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 638 chr1 25496487 25496985 + 2 NA intron (NM_018202, intron 10 of 10) L2b|LINE|L2 -46849 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 166-38 chr17 74827620 74827729 + 2 NA intron (NM_001321264, intron 9 of 9) MIRb|SINE|MIR 32210 NR_103735 2905 Hs.436980 NM_000835 ENSG00000161509 GRIN2C GluN2C|NMDAR2C|NR2C glutamate ionotropic receptor NMDA type subunit 2C protein-coding 295-452 chr7 117644914 117645090 + 2 NA intron (NM_000492, intron 23 of 26) intron (NM_000492, intron 23 of 26) -80326 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 370-251 chr2 157575834 157576153 + 2 NA intron (NM_001111031, intron 2 of 8) intron (NM_001111031, intron 2 of 8) 21567 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 532-67 chr14 51307372 51307896 + 2 NA intron (NR_145423, intron 1 of 1) intron (NR_145423, intron 1 of 1) 20751 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 433-246 chr6 75972480 75972911 + 2 NA intron (NM_001563, intron 12 of 16) intron (NM_001563, intron 12 of 16) 99967 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 247-366 chr6 135035026 135035196 + 2 NA TTS (NM_001145207) TTS (NM_001145207) 19711 NM_006620 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 477-28 chr1 227652649 227653026 + 2 NA intron (NM_001367909, intron 3 of 3) L1MA9|LINE|L1 44870 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 312-361 chr4 23788858 23789151 + 2 NA Intergenic Intergenic 92288 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 376-121 chr15 69701887 69702165 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 109826 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 332-229 chr19 36373344 36373604 + 2 NA intron (NM_001297619, intron 1 of 4) L1MA8|LINE|L1 5727 NM_001297619 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 268-12 chr1 103224440 103224655 + 2 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -116025 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 322-584 chrX 86067848 86068045 + 2 NA Intergenic L1PA11|LINE|L1 -20388 NM_000390 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM Rab escort protein protein-coding 262-244 chr20 12723649 12723885 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 213196 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 240-206 chr2 15095287 15095444 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 462648 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 597-94 chr3 111406538 111406949 + 2 NA Intergenic L1MEc|LINE|L1 -135454 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 204-36 chr11 9893352 9893525 + 2 NA intron (NM_030962, intron 17 of 39) LTR41C|LTR|ERVL 54296 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 363-183 chr17 70726878 70727213 + 2 NA Intergenic Intergenic 475134 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 281-339 chr4 179862360 179862507 + 2 NA Intergenic L1MDa|LINE|L1 1296716 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 284-218 chr2 186381663 186381844 + 2 NA Intergenic AluSx|SINE|Alu -104507 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 466-29 chr10 64572150 64572588 + 2 NA Intergenic AluSp|SINE|Alu -253159 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 917-26 chr8 107108978 107109635 + 2 NA Intergenic AluSz6|SINE|Alu 227209 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 445-203 chr4 100491872 100492225 + 2 NA intron (NM_001159694, intron 1 of 10) L1M3b|LINE|L1 25974 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 266-59 chr11 25814280 25814468 + 2 NA Intergenic Intergenic -374749 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 382-68 chr11 115076330 115076578 + 2 NA Intergenic Intergenic -257123 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 524-247 chr8 14957319 14957712 + 2 NA intron (NM_139167, intron 1 of 7) (ATATTTA)n|Simple_repeat|Simple_repeat -104005 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 406-20 chr1 201660739 201660976 + 2 NA intron (NM_020443, intron 1 of 29) MamRep38|DNA|hAT 12535 NM_020443 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 142-86 chrX 9908508 9908621 + 2 NA intron (NM_001649, intron 5 of 9) intron (NM_001649, intron 5 of 9) -3808 NM_001320664 357 Hs.567236 NM_001649 ENSG00000146950 SHROOM2 APXL|HSAPXL shroom family member 2 protein-coding 231-143 chr18 80076953 80077156 + 2 NA intron (NR_103445, intron 2 of 3) MLT1A1|LTR|ERVL-MaLR 9798 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 276-311 chr3 167208401 167208571 + 2 NA Intergenic L1M1|LINE|L1 171797 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 268-105 chr13 101845633 101845868 + 2 NA intron (NM_001321937, intron 3 of 3) intron (NM_001321937, intron 3 of 3) 70895 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 256-5 chr1 41167319 41167521 + 2 NA intron (NM_001172218, intron 2 of 15) L1MA6|LINE|L1 -4403 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 377-425 chr9 27734499 27734796 + 2 NA Intergenic AluSx|SINE|Alu -160781 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 447-217 chr5 108312386 108312733 + 2 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 69539 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 529-57 chr13 34093212 34093560 + 2 NA Intergenic Intergenic -254657 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 252-21 chr1 185633396 185633581 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -5000 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 411-138 chr2 27577151 27577386 + 2 NA exon (NM_032266, exon 1 of 1) exon (NM_032266, exon 1 of 1) 746 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 486-310 chr9 89239741 89240190 + 2 NA Intergenic L1MEi|LINE|L1 -61147 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 649-106 chr8 50922653 50923103 + 2 NA Intergenic L1M4|LINE|L1 758747 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 247-129 chr15 68095765 68095925 + 2 NA intron (NM_016166, intron 2 of 13) intron (NM_016166, intron 2 of 13) 41269 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 231-366 chr8 134176200 134176392 + 2 NA Intergenic L1ME3G|LINE|L1 289800 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 325-496 chr7 26582631 26582912 + 2 NA Intergenic Intergenic -43946 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 213-150 chr2 154523504 154523655 + 2 NA Intergenic L1MA2|LINE|L1 -66141 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 373-281 chr4 33634102 33634433 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 405626 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 234-16 chr1 118781778 118781940 + 2 NA Intergenic L1MB2|LINE|L1 206484 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 334-45 chr10 23720594 23720826 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 25983 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 272-108 chr14 37535702 37535905 + 2 NA intron (NM_138731, intron 13 of 13) intron (NM_138731, intron 13 of 13) 59446 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 150-67 chr3 35187333 35187477 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 206618 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 198-37 chr11 31278745 31278872 + 2 NA intron (NM_181807, intron 7 of 8) L1MA8|LINE|L1 90931 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 616-150 chr6 155337944 155338501 + 2 NA Intergenic L1PB1|LINE|L1 -23738 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 259-256 chr3 106180529 106180735 + 2 NA Intergenic Intergenic -311231 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 348-556 chr9 79035504 79035724 + 2 NA Intergenic MER4E|LTR|ERV1 110052 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 252-324 chr5 27139931 27140133 + 2 NA Intergenic Intergenic -101446 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 173-116 chr6 51975116 51975209 + 2 NA intron (NM_138694, intron 35 of 66) intron (NM_138694, intron 35 of 66) 112451 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 626-52 chr18 74663290 74663767 + 2 NA intron (NM_001146190, intron 2 of 3) L3|LINE|CR1 32565 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 305-233 chr2 3909384 3909580 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 64550 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 244-268 chr4 80831659 80831871 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -198943 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 359-336 chr3 172223532 172223813 + 2 NA intron (NM_001135095, intron 3 of 25) intron (NM_001135095, intron 3 of 25) 183141 NM_001135095 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 130-14 chr10 133452294 133452388 + 2 NA Intergenic L1MB7|LINE|L1 -1587 NR_149718 619207 Hs.659384 NM_001033584 ENSG00000214279 SCART1 - scavenger receptor family member expressed on T cells 1 pseudo 401-227 chr4 45707079 45707381 + 2 NA Intergenic L1PB4|LINE|L1 416824 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 146-80 chr6 86263565 86263658 + 2 NA Intergenic L1M6|LINE|L1 -584878 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 310-180 chr16 87149964 87150217 + 2 NA Intergenic Intergenic -62025 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 410-59 chr11 101892356 101892657 + 2 NA intron (NM_178127, intron 8 of 8) AluSq2|SINE|Alu -22504 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 263-62 chr11 2487616 2487872 + 2 NA intron (NM_181798, intron 1 of 15) L1MB2|LINE|L1 26290 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 359-153 chr15 57853915 57854136 + 2 NA Intergenic Intergenic 147311 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 609-41 chr17 58829715 58830296 + 2 NA intron (NM_014906, intron 1 of 6) AluJo|SINE|Alu 74136 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 352-475 chr6 160187728 160188021 + 2 NA Intergenic L1ME1|LINE|L1 66043 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 446-170 chr21 23654395 23654681 + 2 NA Intergenic Intergenic -269703 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 557-220 chr9 103911975 103912370 + 2 NA Intergenic Intergenic -87537 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 567-204 chr9 106263099 106263497 + 2 NA Intergenic L1MB3|LINE|L1 -337630 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 161-86 chr5 69081450 69081588 + 2 NA Intergenic Intergenic -12495 NM_001251969 64924 Hs.631975 NM_022902 ENSG00000145740 SLC30A5 ZNT5|ZNTL1|ZTL1|ZnT-5 solute carrier family 30 member 5 protein-coding 376-53 chr10 70248828 70249074 + 2 NA 3' UTR (NM_022146, exon 4 of 4) 3' UTR (NM_022146, exon 4 of 4) -15522 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 285-124 chr14 76189846 76190063 + 2 NA intron (NM_001322028, intron 8 of 9) intron (NM_001322028, intron 8 of 9) 35600 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 430-124 chr18 56352395 56352822 + 2 NA Intergenic L1ME4a|LINE|L1 -161346 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 226-66 chr12 10110276 10110420 + 2 NA Intergenic L1PB3|LINE|L1 -11363 NM_001297748 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 499-199 chr5 25759805 25760297 + 2 NA Intergenic HERV16-int|LTR|ERVL 569098 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 675-7 chr1 192898950 192899530 + 2 NA Intergenic Intergenic 49017 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 389-36 chr10 67273328 67273600 + 2 NA intron (NM_001127384, intron 5 of 17) L1ME2z|LINE|L1 129946 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 291-286 chr3 41060606 41060804 + 2 NA Intergenic L1PA16|LINE|L1 -138800 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 290-83 chr11 75210919 75211128 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -29751 NM_001195528 100507050 Hs.577323 NM_001195528 ENSG00000261594 TPBGL - trophoblast glycoprotein like protein-coding 330-409 chr5 25109226 25109447 + 2 NA Intergenic Intergenic 81320 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 422-49 chr11 99404583 99404863 + 2 NA intron (NM_001243271, intron 2 of 20) L1MA4A|LINE|L1 -151422 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 338-24 chr1 166007601 166007895 + 2 NA Intergenic L1PREC2|LINE|L1 99827 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 241-46 chr10 88604657 88604794 + 2 NA intron (NM_001010939, intron 9 of 10) L2a|LINE|L2 17963 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 413-27 chr1 240904430 240904733 + 2 NA intron (NM_001282773, intron 4 of 15) intron (NM_001282773, intron 4 of 15) -227691 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 466-42 chr10 127295824 127296235 + 2 NA intron (NM_001290223, intron 29 of 51) MIR3|SINE|MIR -99438 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 370-464 chr8 139156263 139156498 + 2 NA Intergenic Intergenic -242339 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 112-19 chr18 680234 680315 + 2 NA intron (NM_001318760, intron 9 of 13) MIR3|SINE|MIR -21983 NM_001012716 494514 Hs.274959 NM_001012716 TYMSOS C18orf56 TYMS opposite strand protein-coding 529-160 chr4 55839019 55839386 + 2 NA Intergenic L1MB4|LINE|L1 -14446 NM_001024924 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 682-20 chr11 100524237 100524686 + 2 NA Intergenic L1MA9|LINE|L1 -162827 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 212-153 chr2 68720502 68720652 + 2 NA Intergenic Intergenic -14234 NM_001166277 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 309-553 chr8 107924883 107925175 + 2 NA intron (NM_001282863, intron 4 of 4) L1PB2|LINE|L1 156910 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 308-329 chr4 48329539 48329832 + 2 NA Intergenic Intergenic -11844 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 354-341 chr4 91174428 91174693 + 2 NA intron (NM_001145065, intron 10 of 10) L1PA8|LINE|L1 939529 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 604-107 chr3 65289655 65290067 + 2 NA Intergenic Intergenic -601861 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 313-21 chr1 117774992 117775157 + 2 NA Intergenic Intergenic 154547 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 344-457 chr7 47206769 47207026 + 2 NA Intergenic AluJb|SINE|Alu 257906 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 249-226 chr2 201509175 201509384 + 2 NA intron (NM_001168216, intron 11 of 12) L1MB2|LINE|L1 57539 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 449-134 chr2 194972240 194972542 + 2 NA Intergenic Intergenic 241796 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 266-126 chr15 37908015 37908273 + 2 NA Intergenic Intergenic -26463 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 317-476 chr8 54608536 54608721 + 2 NA Intergenic L1PA11|LINE|L1 -7468 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 332-161 chr15 27740990 27741274 + 2 NA Intergenic Intergenic 358183 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 165-50 chr2 77748402 77748560 + 2 NA intron (NR_110288, intron 3 of 3) L1M4b|LINE|L1 -167453 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 391-2 chr1 18837016 18837342 + 2 NA Intergenic AluJr|SINE|Alu 22482 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 729-75 chr8 50471294 50471899 + 2 NA intron (NR_135797, intron 8 of 20) L1MB2|LINE|L1 307465 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 341-122 chr12 61766886 61767114 + 2 NA intron (NM_178539, intron 2 of 4) MIRc|SINE|MIR 425839 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 335-567 chr9 78909470 78909728 + 2 NA Intergenic L1ME1|LINE|L1 236067 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 383-377 chr8 72051580 72051806 + 2 NA intron (NM_007332, intron 14 of 26) intron (NM_007332, intron 14 of 26) 23891 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 224-312 chr8 35155587 35155738 + 2 NA Intergenic L1MD3|LINE|L1 -79813 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 312-427 chr5 111225775 111225931 + 2 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 1469 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 247-293 chr4 45969933 45970128 + 2 NA Intergenic Intergenic 154024 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 430-302 chr8 36085285 36085582 + 2 NA Intergenic Intergenic -375113 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 417-177 chr3 80470773 80471121 + 2 NA Intergenic Intergenic -293950 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 302-475 chr8 136637044 136637278 + 2 NA intron (NR_147196, intron 2 of 5) L1PB3|LINE|L1 106363 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 285-117 chr14 52182987 52183176 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -84617 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 357-85 chr12 34639175 34639406 + 2 NA Intergenic ALR/Alpha|Satellite|centr 616794 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 269-114 chr14 48754388 48754544 + 2 NA Intergenic Intergenic 831914 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 211-111 chr17 50024625 50024790 + 2 NA Intergenic (ATAC)n|Simple_repeat|Simple_repeat -29483 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 498-274 chr8 99422308 99422749 + 2 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 114202 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 487-161 chr2 233752285 233752610 + 2 NA intron (NM_019093, intron 1 of 4) intron (NM_019093, intron 1 of 4) 2898 NR_037694 100286922 Hs.124112 NR_037694 ENSG00000178836 LOC100286922 - DnaJ heat shock protein family (Hsp40) member B3 pseudogene pseudo 348-140 chr14 63359911 63360216 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -41128 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 396-360 chr8 133676613 133676896 + 2 NA intron (NR_134462, intron 1 of 2) L1MEc|LINE|L1 7312 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 551-62 chr15 81940159 81940653 + 2 NA Intergenic MIR3|SINE|MIR 105612 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 744-27 chr19 36641548 36642131 + 2 NA intron (NM_001297623, intron 4 of 4) intron (NM_001297623, intron 4 of 4) 24998 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 250-152 chr16 83470964 83471188 + 2 NA intron (NM_001220489, intron 5 of 12) MLT1D|LTR|ERVL-MaLR -37270 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 592-151 chr6 44523128 44523556 + 2 NA Intergenic L1MA4A|LINE|L1 28539 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 399-305 chr8 61166824 61167065 + 2 NA Intergenic LTR49-int|LTR|ERV1 -121026 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 309-491 chr6 139388779 139388961 + 2 NA Intergenic Intergenic -14222 NM_006079 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 389-90 chr12 129816608 129816865 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 87289 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 281-97 chr12 106172105 106172293 + 2 NA Intergenic Intergenic -32166 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 236-233 chr3 101588568 101588716 + 2 NA intron (NR_135228, intron 3 of 3) L1MC4|LINE|L1 14462 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 256-3 chr1 34430010 34430181 + 2 NA Intergenic Intergenic 239599 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 883-29 chr4 18270289 18271169 + 2 NA Intergenic Intergenic -248854 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 441-196 chr5 25198504 25198921 + 2 NA intron (NR_136209, intron 1 of 3) LTR12C|LTR|ERV1 7759 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 160-111 chr7 120750261 120750374 + 2 NA TTS (NM_012281) TTS (NM_012281) 107827 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 288-236 chr21 19933586 19933800 + 2 NA Intergenic Intergenic -33938 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 223-73 chr13 46799602 46799769 + 2 NA Intergenic Intergenic -2524 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 199-125 chr2 146627040 146627175 + 2 NA Intergenic Intergenic 40050 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 316-587 chr9 84910911 84911137 + 2 NA intron (NM_001018064, intron 13 of 17) L1MD1|LINE|L1 205123 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 451-248 chr8 141673042 141673326 + 2 NA Intergenic L1ME4a|LINE|L1 113129 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 198-51 chr12 42995450 42995595 + 2 NA Intergenic Intergenic -159793 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 217-24 chr1 225115933 225116120 + 2 NA intron (NM_001367479, intron 23 of 85) L2c|LINE|L2 186351 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 188-210 chr8 137716404 137716559 + 2 NA Intergenic Intergenic -302893 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 224-285 chr6 140549939 140550130 + 2 NA Intergenic L1MA3|LINE|L1 -133780 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 188-105 chr2 133665272 133665415 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -96880 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 277-83 chr11 116064125 116064273 + 2 NA Intergenic Intergenic -303999 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 374-106 chr15 24778893 24779131 + 2 NA Intergenic L1MC3|LINE|L1 -44596 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 474-33 chr10 53936942 53937333 + 2 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -549093 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 305-209 chr18 1916466 1916663 + 2 NA Intergenic Intergenic -556935 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 670-13 chr10 48833601 48834130 + 2 NA intron (NM_020945, intron 39 of 61) intron (NM_020945, intron 39 of 61) 80370 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 560-165 chr7 16579686 16580213 + 2 NA intron (NM_001195280, intron 7 of 8) intron (NM_001195280, intron 7 of 8) 53124 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 284-160 chr17 55488125 55488350 + 2 NA Intergenic Intergenic -66402 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 332-106 chr11 112724458 112724761 + 2 NA Intergenic Intergenic -168807 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 278-127 chr15 26562017 26562265 + 2 NA intron (NM_001191320, intron 5 of 6) intron (NM_001191320, intron 5 of 6) 66949 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 289-223 chr2 71958926 71959157 + 2 NA Intergenic L1PA16|LINE|L1 188821 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 314-506 chr6 105626117 105626421 + 2 NA Intergenic Intergenic -223187 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 661-31 chr16 50916056 50916556 + 2 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 37533 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 409-47 chr12 20129068 20129278 + 2 NA Intergenic Intergenic -1272 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 591-91 chr21 31402261 31402760 + 2 NA intron (NM_001353690, intron 1 of 27) MLT1O|LTR|ERVL-MaLR -58156 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 415-160 chr20 46451352 46451578 + 2 NA Intergenic AluSx|SINE|Alu 6178 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 275-386 chr9 95629450 95629650 + 2 NA Intergenic Intergenic -112493 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 340-461 chr5 114716180 114716430 + 2 NA intron (NR_130785, intron 1 of 12) L1MC4|LINE|L1 57108 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 328-162 chr14 79989138 79989347 + 2 NA Intergenic Intergenic -222177 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 567-85 chr2 88386271 88386596 + 2 NA Intergenic L1MB7|LINE|L1 66260 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 207-273 chr7 84332198 84332389 + 2 NA Intergenic Intergenic -137504 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 347-456 chr7 18997690 18997940 + 2 NA 3' UTR (NM_001321877, exon 25 of 25) 3' UTR (NM_001321877, exon 25 of 25) 119821 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 210-160 chr21 28122385 28122530 + 2 NA intron (NR_126012, intron 5 of 5) intron (NR_126012, intron 5 of 5) 32054 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 400-149 chr2 11013565 11013932 + 2 NA Intergenic MIR|SINE|MIR 101814 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 312-428 chr5 113788887 113789121 + 2 NA Intergenic LTR39-int|LTR|ERV1 275310 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 197-170 chr5 82093147 82093271 + 2 NA intron (NM_031482, intron 3 of 7) L1MEc|LINE|L1 121186 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 238-393 chr8 122393904 122394052 + 2 NA Intergenic Intergenic 174666 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 317-166 chr15 58104172 58104441 + 2 NA Intergenic L1MB7|LINE|L1 -33863 NM_001320636 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 328-628 chrX 47599960 47600203 + 2 NA intron (NM_006950, intron 5 of 12) L1M4|LINE|L1 12652 NR_039926 100616147 NR_039926 ENSG00000263858 MIR4769 - microRNA 4769 ncRNA 247-142 chr16 26398691 26398864 + 2 NA Intergenic HAL1b|LINE|L1 373540 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 245-147 chr15 94127140 94127286 + 2 NA Intergenic Intergenic -19275 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 219-329 chr7 27768364 27768509 + 2 NA intron (NM_001362794, intron 4 of 16) intron (NM_001362794, intron 4 of 16) 28341 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 216-222 chr3 76264416 76264560 + 2 NA Intergenic Intergenic -478939 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 415-269 chr8 15134109 15134519 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 104117 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 318-467 chr5 179107492 179107793 + 2 NA Intergenic L1ME1|LINE|L1 47269 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 196-58 chr12 30881089 30881218 + 2 NA Intergenic Intergenic -45595 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 502-167 chr22 35012146 35012478 + 2 NA Intergenic Intergenic -14396 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 347-449 chr6 164711487 164711767 + 2 NA Intergenic Intergenic 110436 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 299-477 chr9 7175452 7175612 + 2 NA non-coding (NR_148677, exon 22 of 22) non-coding (NR_148677, exon 22 of 22) 418182 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 223-234 chr3 191854097 191854280 + 2 NA Intergenic Intergenic -384442 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 183-139 chr7 11624399 11624527 + 2 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 207735 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 840-29 chr2 125772634 125773366 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 344985 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 340-108 chr12 41824596 41824767 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 60492 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 260-463 chr9 137860709 137860954 + 2 NA Intergenic L1MEf|LINE|L1 -16951 NM_000718 774 Hs.495522 NM_000718 ENSG00000148408 CACNA1B BIII|CACNL1A5|CACNN|Cav2.2|DYT23 calcium voltage-gated channel subunit alpha1 B protein-coding 700-95 chr7 129577906 129578359 + 2 NA Intergenic Intergenic -33588 NM_001293163 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 337-443 chr5 43815948 43816244 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -212866 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 337 chr1 29870252 29870433 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 167270 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 342-432 chr5 150823218 150823505 + 2 NA Intergenic L1MA7|LINE|L1 -23160 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 462-23 chr10 28942446 28942879 + 2 NA Intergenic L1MD2|LINE|L1 96254 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 301-188 chr2 3153916 3154083 + 2 NA Intergenic Intergenic -27973 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 664-109 chr7 57461171 57461689 + 2 NA intron (NM_001159279, intron 1 of 3) L1MC4|LINE|L1 11253 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 204-276 chr7 108862322 108862493 + 2 NA Intergenic Intergenic 22180 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 205-247 chr6 126584111 126584258 + 2 NA Intergenic L2b|LINE|L2 99553 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 371-113 chr14 87913733 87913948 + 2 NA Intergenic L1PA13|LINE|L1 79342 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 328-136 chr14 26157982 26158208 + 2 NA Intergenic L1MA8|LINE|L1 395335 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 219-212 chr21 15125202 15125390 + 2 NA Intergenic Intergenic -60296 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 497-256 chr7 14994234 14994569 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -19543 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 247-180 chr19 52162151 52162347 + 2 NA intron (NM_001102657, intron 3 of 4) MLT1A1-int|LTR|ERVL-MaLR 9372 NM_001102657 162962 Hs.631584 NM_001102657 ENSG00000196267 ZNF836 - zinc finger protein 836 protein-coding 549-129 chr20 52500735 52501096 + 2 NA Intergenic Intergenic -119923 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 426-55 chr11 120940840 120941202 + 2 NA intron (NR_133004, intron 2 of 2) intron (NR_133004, intron 2 of 2) 17018 NR_133004 101929208 Hs.662310 NR_133004 LOC101929208 - uncharacterized LOC101929208 ncRNA 349-254 chr2 59878837 59879089 + 2 NA Intergenic Intergenic 504073 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 364-187 chr19 28935384 28935720 + 2 NA Intergenic Intergenic -29579 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 332-174 chr16 6300534 6300819 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 280973 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 351-9 chr1 88615600 88615940 + 2 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -68374 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 401-109 chr15 93005780 93006008 + 2 NA intron (NM_001271, intron 34 of 38) intron (NM_001271, intron 34 of 38) 67262 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 347-395 chr5 50325303 50325646 + 2 NA Intergenic Intergenic 115814 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 279-25 chr1 236365853 236366054 + 2 NA Intergenic L1MEc|LINE|L1 -28333 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 439-141 chr2 123843264 123843571 + 2 NA Intergenic L1PA16|LINE|L1 181757 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 195-163 chr4 48842151 48842336 + 2 NA intron (NM_001079839, intron 3 of 8) MIRb|SINE|MIR 10937 NM_001168254 54940 Hs.518750 NM_017830 ENSG00000109180 OCIAD1 ASRIJ|OCIA|TPA018 OCIA domain containing 1 protein-coding 303-432 chr7 108817242 108817524 + 2 NA Intergenic Intergenic 67204 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 330-323 chr20 55219996 55220206 + 2 NA Intergenic AluSc8|SINE|Alu -202942 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 261-313 chr5 67344357 67344531 + 2 NA Intergenic L1M2|LINE|L1 -147645 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 190-150 chr5 115689126 115689282 + 2 NA Intergenic L1MA5|LINE|L1 -16552 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 285-405 chr8 57614115 57614350 + 2 NA Intergenic L1MA3|LINE|L1 -131917 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 130-75 chr6 110574286 110574392 + 2 NA Intergenic L1M4a2|LINE|L1 -97726 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 278-302 chr4 33614775 33614952 + 2 NA Intergenic Intergenic 425030 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 309-139 chr14 28114045 28114284 + 2 NA Intergenic Intergenic -440943 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 269-204 chr2 114144618 114144802 + 2 NA Intergenic L2b|LINE|L2 -164726 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 463-282 chr8 79699159 79699619 + 2 NA Intergenic Intergenic 67086 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 382-79 chr12 82428807 82429079 + 2 NA intron (NR_144941, intron 6 of 11) L1MA4A|LINE|L1 -70138 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 380-144 chr16 82849769 82849997 + 2 NA intron (NM_001220488, intron 2 of 14) Tigger1|DNA|TcMar-Tigger 76564 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 209-105 chr15 53027428 53027584 + 2 NA Intergenic L1ME4b|LINE|L1 -88859 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 249-242 chr21 19728565 19728789 + 2 NA Intergenic Intergenic 171078 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 234-103 chr14 75572265 75572482 + 2 NA Intergenic Intergenic -6247 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 372-517 chr9 87455671 87455914 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -41436 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 431-191 chr3_KI270781v1_alt 97066 97326 + 2 NA intron (NR_161198, intron 1 of 1) intron (NR_161198, intron 1 of 1) 14588 NR_161198 105374250 Hs.129464 NR_161198 LINC02054 - long intergenic non-protein coding RNA 2054 ncRNA 220-48 chr10 64189512 64189709 + 2 NA Intergenic Intergenic -635918 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 379-165 chr2 103549474 103549716 + 2 NA Intergenic L1P3|LINE|L1 -565166 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 192-89 chr18 40280259 40280439 + 2 NA Intergenic Intergenic 214063 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 346-110 chr12 100698648 100698983 + 2 NA Intergenic Intergenic -95961 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 295-407 chr6 61546155 61546352 + 2 NA intron (NR_146870, intron 15 of 15) intron (NR_146870, intron 15 of 15) -27877 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 401-102 chr15 69650429 69650660 + 2 NA intron (NR_126437, intron 3 of 5) L2c|LINE|L2 58344 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 622-114 chr6 22778639 22778953 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -60872 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 346-298 chr3 4422633 4422904 + 2 NA intron (NM_001164674, intron 2 of 7) intron (NM_001164674, intron 2 of 7) 44501 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 647-70 chr3 175859890 175860444 + 2 NA Intergenic Intergenic -83834 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 399-87 chr14 57606905 57607222 + 2 NA intron (NM_001352014, intron 1 of 9) L2b|LINE|L2 -113206 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 400-66 chr12 29428366 29428665 + 2 NA intron (NR_073172, intron 1 of 1) intron (NR_073172, intron 1 of 1) 39221 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 262-389 chr7 7552344 7552589 + 2 NA non-coding (NR_110084, exon 4 of 5) non-coding (NR_110084, exon 4 of 5) 13599 NR_110084 101927391 Hs.223837 NR_110084 LOC101927391 - uncharacterized LOC101927391 ncRNA 298-417 chr7 1343778 1343955 + 2 NA Intergenic Intergenic 110994 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 502-33 chr10 44751263 44751617 + 2 NA Intergenic L1MC1|LINE|L1 -159876 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 1200-5 chr22 16055861 16056695 + 2 NA Intergenic ALR/Alpha|Satellite|centr -235394 NR_133911 106480334 Hs.643607 NR_133911 ENSG00000232775 BMS1P22 - BMS1 pseudogene 22 pseudo 210-141 chr2 143073696 143073854 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -55644 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 258-117 chr14 40473167 40473323 + 2 NA Intergenic L1ME3|LINE|L1 -481466 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 232-150 chr19 27719330 27719493 + 2 NA Intergenic HSAT4|Satellite|centr -74020 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 377-294 chr4 122661684 122661980 + 2 NA intron (NR_104126, intron 10 of 10) intron (NR_104126, intron 10 of 10) -40766 NM_021803 59067 Hs.567559 NM_021803 ENSG00000138684 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 543-29 chr10 32232473 32232800 + 2 NA Intergenic LTR9C|LTR|ERV1 114522 NM_025209 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 458-112 chr19 20301934 20302184 + 2 NA Intergenic AluSq2|SINE|Alu 97295 NR_036053 100302179 NR_036053 ENSG00000238517 MIR1270 MIR1270-1|MIR1270-2|MIRN1270|hsa-mir-1270|hsa-mir-1270-1|mir-1270 microRNA 1270 ncRNA 258-435 chrX 44648883 44649091 + 2 NA Intergenic Intergenic -106128 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 405-169 chr2 199708555 199708810 + 2 NA Intergenic L1MEc|LINE|L1 100614 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 315-208 chr19 33980471 33980692 + 2 NA Intergenic Intergenic 183711 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 206-247 chr7 27800771 27800940 + 2 NA intron (NM_001362795, intron 13 of 14) AluSx3|SINE|Alu 60760 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 363-157 chr15 63797021 63797272 + 2 NA intron (NM_003922, intron 1 of 77) LTR8B|LTR|ERV1 36802 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 259-159 chr17 57155481 57155661 + 2 NA Intergenic Intergenic 60082 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 324-61 chr10 71116031 71116276 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -96417 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 401-211 chr3 89325587 89325850 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 218097 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 217-58 chr11 20809115 20809300 + 2 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 139621 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 308-509 chr8 120219748 120219996 + 2 NA intron (NM_021110, intron 14 of 47) Tigger15a|DNA|TcMar-Tigger 94770 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 302-318 chr4 46886875 46887139 + 2 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 22238 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 185-117 chr2 214223290 214223409 + 2 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -187705 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 148-13 chr11 83069399 83069495 + 2 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) 2015 NM_001286061 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 313-399 chr4 98694646 98694846 + 2 NA Intergenic Intergenic 35844 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 436-330 chr9 92166383 92166685 + 2 NA Intergenic L1M4|LINE|L1 24622 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 336-14 chr1 49995656 49995982 + 2 NA intron (NM_001323575, intron 1 of 12) L1PBa|LINE|L1 28135 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 270-63 chr11 90358230 90358422 + 2 NA intron (NR_104190, intron 1 of 6) L1MC3|LINE|L1 107094 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 182-7 chr1 73546180 73546355 + 2 NA Intergenic L1MC4|LINE|L1 -128412 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 449-111 chr2 14054871 14055145 + 2 NA Intergenic (ATAATAT)n|Simple_repeat|Simple_repeat 345950 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 210-249 chr6 108707311 108707481 + 2 NA Intergenic L2c|LINE|L2 -44258 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 500-154 chr2 156207296 156207647 + 2 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 47460 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 265-159 chr18 69987217 69987391 + 2 NA Intergenic L1MB1|LINE|L1 -30505 NM_001303619 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 422-247 chr5 147021681 147021990 + 2 NA intron (NM_001271900, intron 2 of 10) L1ME1|LINE|L1 34302 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 532-114 chr2 22189546 22189918 + 2 NA Intergenic Intergenic -346747 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 267-117 chr14 87337100 87337259 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie 318115 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 229-393 chr8 105270884 105271018 + 2 NA Intergenic L1M4b|LINE|L1 -47487 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 311-498 chr8 67192448 67192745 + 2 NA intron (NM_001363133, intron 26 of 27) L1MB8|LINE|L1 108748 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 550-244 chr9 89664037 89664387 + 2 NA intron (NR_024280, intron 1 of 5) intron (NR_024280, intron 1 of 5) 24429 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 174-120 chr6 40129127 40129255 + 2 NA Intergenic Intergenic -194729 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 325-185 chr15 97524171 97524446 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -2497 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 257-54 chr10 131118358 131118537 + 2 NA intron (NM_174937, intron 8 of 11) MER31B|LTR|ERV1 23229 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 510-187 chr3 117667167 117667618 + 2 NA Intergenic Intergenic 23533 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 675-69 chr5 12116068 12116490 + 2 NA Intergenic Intergenic -211833 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 303-133 chr14 84138468 84138622 + 2 NA Intergenic Intergenic -1133387 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 422-271 chr6 168471811 168472157 + 2 NA intron (NM_001166412, intron 1 of 12) L1MB2|LINE|L1 30800 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 334-392 chr4 111889948 111890194 + 2 NA Intergenic Intergenic -255383 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 276-451 chr8 80865557 80865777 + 2 NA intron (NM_001033723, intron 1 of 8) intron (NM_001033723, intron 1 of 8) 8801 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 516-231 chr7 4814853 4815347 + 2 NA intron (NM_018059, intron 9 of 14) MLT1E2|LTR|ERVL-MaLR 22350 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 337-462 chr5 129790550 129790728 + 2 NA Intergenic L1MEf|LINE|L1 42545 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 238-174 chr2 67681126 67681290 + 2 NA Intergenic L2b|LINE|L2 144354 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 225-307 chr6 46201604 46201794 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -30689 NM_021572 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 595-174 chr9 104467496 104468046 + 2 NA Intergenic MIRc|SINE|MIR -36492 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 547-4 chr1 60096356 60096697 + 2 NA Intergenic L1ME3A|LINE|L1 -22756 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 455-45 chr11 25361959 25362326 + 2 NA Intergenic Intergenic -826981 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 302-235 chr2 174654283 174654532 + 2 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) -19802 NM_003387 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 487-183 chr3 44045246 44045575 + 2 NA Intergenic Intergenic -68802 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 194-41 chr12 33086463 33086617 + 2 NA Intergenic Intergenic -189694 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 680-12 chr1 228724407 228725063 + 2 NA intron (NR_037962, intron 1 of 2) L1MA9|LINE|L1 -10744 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 216-104 chr14 81941987 81942181 + 2 NA Intergenic Intergenic -198946 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 224-52 chr11 93668713 93668873 + 2 NA intron (NM_033395, intron 3 of 29) intron (NM_033395, intron 3 of 29) 7111 NM_033395 85459 Hs.458418 NM_033395 ENSG00000166004 CEP295 KIAA1731 centrosomal protein 295 protein-coding 376-2 chr1 42522337 42522596 + 2 NA intron (NM_001355227, intron 6 of 18) L1MB3|LINE|L1 -10554 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 140-14 chr11 43791558 43791691 + 2 NA intron (NM_016142, intron 3 of 10) intron (NM_016142, intron 3 of 10) -89207 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 436-259 chr6 11903510 11903870 + 2 NA Intergenic Intergenic 97554 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 438-204 chr4 143019771 143020003 + 2 NA Intergenic L1MA5|LINE|L1 164974 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 434-117 chr18 13608828 13609131 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -2135 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 337-345 chr3 34287419 34287661 + 2 NA Intergenic Intergenic 488910 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 459-233 chr5 34054970 34055376 + 2 NA intron (NR_146599, intron 7 of 11) intron (NR_146599, intron 7 of 11) -11960 NM_181435 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 467-92 chr15 80754412 80754839 + 2 NA 3' UTR (NM_021214, exon 3 of 3) 3' UTR (NM_021214, exon 3 of 3) -24745 NM_018689 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 271-36 chr1 240367308 240367473 + 2 NA intron (NM_020066, intron 14 of 17) L1ME3C|LINE|L1 244765 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 244-253 chr4 33529710 33529945 + 2 NA Intergenic Intergenic 510066 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 198-244 chr8 110619637 110619781 + 2 NA Intergenic L1MC3|LINE|L1 407724 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 221-169 chr22 23227466 23227620 + 2 NA intron (NM_004327, intron 1 of 22) Plat_L3|LINE|CR1 -35224 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 175-75 chr2 33685603 33685730 + 2 NA Intergenic AluY|SINE|Alu -21220 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 316-131 chr12 41460114 41460322 + 2 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 22479 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 396-78 chr11 114713846 114714140 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie 35466 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 325-539 chr8 65311885 65312142 + 2 NA Intergenic L1MEg|LINE|L1 -131673 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 318-295 chr2 169938524 169938796 + 2 NA intron (NM_172070, intron 19 of 38) L1MEd|LINE|L1 111152 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 456-69 chr12 119699321 119699586 + 2 NA intron (NM_007174, intron 43 of 46) intron (NM_007174, intron 43 of 46) 14271 NR_031589 100302274 NR_031589 ENSG00000283768 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 250-403 chr7 84320862 84321038 + 2 NA Intergenic Intergenic -126161 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 167-86 chr5 12980236 12980337 + 2 NA intron (NR_147005, intron 2 of 4) MLT1B|LTR|ERVL-MaLR 52600 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 204-172 chr21 24017314 24017467 + 2 NA Intergenic L1MC4|LINE|L1 303987 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 393-9 chr1 67934456 67934660 + 2 NA intron (NR_040077, intron 1 of 9) Tigger3b|DNA|TcMar-Tigger -101091 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 168-21 chr12 2487696 2487796 + 2 NA intron (NM_001129844, intron 6 of 46) intron (NM_001129844, intron 6 of 46) 184474 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 231-35 chr10 56925423 56925613 + 2 NA Intergenic Intergenic 379041 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 358-404 chr6 61685518 61685704 + 2 NA intron (NR_146874, intron 8 of 13) intron (NR_146874, intron 8 of 13) 111481 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 360-217 chr2 66369343 66369574 + 2 NA Intergenic Intergenic -11130 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 536-144 chr20 1554511 1554879 + 2 NA intron (NM_178460, intron 1 of 3) intron (NM_178460, intron 1 of 3) 3010 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 192-213 chr8 127571821 127571963 + 2 NA Intergenic L1MA7|LINE|L1 -89753 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 572-125 chr4 65093886 65094287 + 2 NA Intergenic Intergenic -89586 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 300-324 chr4 62183106 62183336 + 2 NA Intergenic Intergenic -21456 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 312-27 chr1 203971502 203971676 + 2 NA Intergenic L1MB7|LINE|L1 69675 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 488-254 chr7 26902484 26902822 + 2 NA Intergenic Intergenic -38063 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 505-251 chr5 124391311 124391592 + 2 NA intron (NR_125774, intron 3 of 5) Tigger1|DNA|TcMar-Tigger 47069 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 248-30 chr10 22147370 22147551 + 2 NA Intergenic L2|LINE|L2 62523 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 416-45 chr10 65982223 65982484 + 2 NA intron (NM_001127384, intron 16 of 17) L1PB1|LINE|L1 410928 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 455-265 chr8 9833455 9833795 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 69704 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 498-6 chr1 71113739 71114175 + 2 NA intron (NR_046217, intron 2 of 3) HAL1|LINE|L1 32633 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 318-232 chr19 31724617 31724794 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 132424 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 269-432 chr9 123532105 123532290 + 2 NA intron (NM_001352968, intron 12 of 18) Tigger9b|DNA|TcMar-Tigger -46575 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 408-273 chr5 109952605 109952993 + 2 NA Intergenic Intergenic 69617 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 304-524 chr8 104317877 104318039 + 2 NA Intergenic LTR8B|LTR|ERV1 -21838 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 457-161 chr3 106081347 106081781 + 2 NA Intergenic Intergenic -212163 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 541-21 chr10 76670151 76670561 + 2 NA Intergenic Intergenic -217688 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 578-179 chr8 115177400 115177933 + 2 NA Intergenic L1MEc|LINE|L1 490347 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 293-312 chr4 100695960 100696155 + 2 NA Intergenic Intergenic -20944 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 291-348 chr5 52177765 52178020 + 2 NA Intergenic L1MD3|LINE|L1 169861 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 336-36 chr1 175646576 175646796 + 2 NA intron (NM_003285, intron 1 of 22) MER102c|DNA|hAT-Charlie 96909 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 240-411 chr8 60044128 60044355 + 2 NA Intergenic Intergenic 237159 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 257-329 chr5 99969992 99970243 + 2 NA Intergenic Intergenic 418137 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 612-77 chr20 31275341 31275859 + 2 NA Intergenic L1M3e|LINE|L1 17936 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 149-89 chr5 163651908 163652003 + 2 NA Intergenic L1MB7|LINE|L1 146336 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 381-337 chr6 99079736 99080060 + 2 NA Intergenic MIR|SINE|MIR -44711 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 301-165 chr17 63051625 63051785 + 2 NA intron (NM_025185, intron 2 of 25) MER47A|DNA|TcMar-Tigger 85470 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 367-401 chr6 146670499 146670816 + 2 NA intron (NM_024694, intron 7 of 35) L2a|LINE|L2 71685 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 279-184 chr2 88149257 88149461 + 2 NA Intergenic L1MA5|LINE|L1 -20936 NM_001244678 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 293-356 chr5 160568176 160568368 + 2 NA intron (NM_001366652, intron 24 of 24) L2c|LINE|L2 82920 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 295-496 chr9 78313400 78313608 + 2 NA intron (NM_021154, intron 6 of 7) L1ME3G|LINE|L1 16379 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 313-116 chr12 102686671 102686862 + 2 NA Intergenic Intergenic 137633 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 567-106 chr22 36457743 36458222 + 2 NA Intergenic Intergenic 23658 NM_012473 25828 Hs.211929 NM_012473 ENSG00000100348 TXN2 COXPD29|MT-TRX|MTRX|TRX2|TXN thioredoxin 2 protein-coding 307-322 chr3 176761824 176762117 + 2 NA Intergenic L1MC4|LINE|L1 55031 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 526-95 chr17 48102693 48103095 + 2 NA Intergenic Intergenic -1416 NM_001127228 10951 Hs.77254 NM_006807 ENSG00000108468 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox 1 protein-coding 371-400 chr8 138328678 138328872 + 2 NA intron (NM_015912, intron 2 of 19) MIR|SINE|MIR 168486 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 162-105 chr5 104157653 104157774 + 2 NA Intergenic Intergenic -594924 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 795-43 chr5 24046963 24047625 + 2 NA intron (NR_131245, intron 4 of 4) L2a|LINE|L2 95946 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 373-8 chr1 42512169 42512495 + 2 NA intron (NM_001355227, intron 6 of 18) MER9a3|LTR|ERVK -20688 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 427-287 chrX 67048479 67048756 + 2 NA Intergenic L2|LINE|L2 -409319 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 244-43 chr10 123274912 123275141 + 2 NA Intergenic G-rich|Low_complexity|Low_complexity 120624 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 310-382 chr4 151980308 151980560 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -120319 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 231-334 chr7 67569432 67569612 + 2 NA Intergenic Intergenic 233546 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 833-3 chr10 990415 991150 + 2 NA intron (NM_012341, intron 1 of 16) L2c|LINE|L2 2348 NM_012341 23560 Hs.215766 NM_012341 ENSG00000107937 GTPBP4 CRFG|NGB|NOG1 GTP binding protein 4 protein-coding 614-123 chr7 118729187 118729637 + 2 NA Intergenic L1MC5a|LINE|L1 504708 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 464-254 chr8 72661670 72662109 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -70156 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 170-110 chr4 157172452 157172604 + 2 NA TTS (NM_001166060) TTS (NM_001166060) -48056 NM_001083619 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 338-118 chr11 133633302 133633525 + 2 NA Intergenic MIR|SINE|MIR -100912 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 334-139 chr14 45451268 45451507 + 2 NA Intergenic L1MA4A|LINE|L1 -198185 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 425-153 chr2 166190494 166190835 + 2 NA intron (NR_110260, intron 3 of 11) intron (NR_110260, intron 3 of 11) -41503 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 426-295 chr8 87031433 87031694 + 2 NA intron (NM_173538, intron 4 of 10) L2|LINE|L2 165148 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 209-280 chr6 140045977 140046129 + 2 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -54792 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 324-469 chr6 93022751 93022958 + 2 NA Intergenic Intergenic 396705 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 321-487 chr6 41046352 41046598 + 2 NA Intergenic Intergenic 3757 NM_001159726 222642 Hs.357392 NM_001010873 ENSG00000112212 TSPO2 BZRPL1 translocator protein 2 protein-coding 553-108 chr2 38070061 38070456 + 2 NA 3' UTR (NM_000104, exon 3 of 3) 3' UTR (NM_000104, exon 3 of 3) 5923 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 220-299 chr5 119842024 119842182 + 2 NA Intergenic Intergenic 212544 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 332-461 chr6 136163442 136163624 + 2 NA intron (NM_018945, intron 8 of 12) THE1C-int|LTR|ERVL-MaLR 86778 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 297-443 chr7 68382846 68383059 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 362699 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 335-17 chr1 104459274 104459451 + 2 NA Intergenic Intergenic 386339 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 347-175 chr17 66119127 66119379 + 2 NA intron (NM_001353129, intron 6 of 26) L1PA10|LINE|L1 72639 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 326-215 chr18 72075637 72075915 + 2 NA Intergenic Intergenic -293550 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 346-96 chr12 22942805 22943136 + 2 NA Intergenic L1M3a|LINE|L1 -232666 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 456-303 chr7 77296442 77296799 + 2 NA Intergenic L1MA5A|LINE|L1 -96801 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 577-162 chr5 170646056 170646418 + 2 NA intron (NR_136214, intron 4 of 5) L1MC1|LINE|L1 35233 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 796-39 chr4 71385960 71386418 + 2 NA intron (NM_003759, intron 3 of 22) HAL1|LINE|L1 47136 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 344-74 chr11 22998610 22998924 + 2 NA Intergenic HERVIP10F-int|LTR|ERV1 -138293 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 363-51 chr10 56453058 56453383 + 2 NA Intergenic Intergenic -91947 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 191-212 chr8 87744343 87744505 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 129591 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 393-345 chr8 30017184 30017444 + 2 NA Intergenic Intergenic -59966 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 341-538 chr8 125124262 125124549 + 2 NA intron (NM_001349486, intron 3 of 7) L1MB8|LINE|L1 32545 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 398-338 chr7 141298565 141298855 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) 224646 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 596-88 chr2 34592558 34592947 + 2 NA Intergenic Intergenic -84805 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 239-56 chr11 42669783 42669955 + 2 NA Intergenic Intergenic -416179 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 193-195 chr8 82890205 82890394 + 2 NA Intergenic L1M4|LINE|L1 -21805 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 393-236 chr4 35505540 35505820 + 2 NA Intergenic MIRb|SINE|MIR 738259 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 295-184 chr18 10400894 10401134 + 2 NA Intergenic L1ME4b|LINE|L1 13356 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 376-130 chr16 50834779 50835011 + 2 NA Intergenic MIRc|SINE|MIR 28223 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 209-4 chr1 76995854 76996014 + 2 NA intron (NM_001320274, intron 2 of 2) L2b|LINE|L2 -64209 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 548-92 chr17 27165797 27166128 + 2 NA Intergenic ALR/Alpha|Satellite|centr -76721 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 418-52 chr12 18382599 18382841 + 2 NA intron (NM_001288774, intron 14 of 32) MER20|DNA|hAT-Charlie 121180 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 129-52 chr21 29732558 29732661 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -15566 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 196-269 chr9 69629362 69629495 + 2 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 42943 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 268-252 chr3 139621735 139621994 + 2 NA intron (NM_001320510, intron 3 of 6) L1MA4A|LINE|L1 56108 NM_001320510 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 260-388 chr6 132686054 132686229 + 2 NA intron (NM_004666, intron 5 of 6) MER53|DNA|hAT 27914 NM_004666 8876 Hs.12114 NM_004666 ENSG00000112299 VNN1 HDLCQ8|Tiff66 vanin 1 protein-coding 157-32 chr12 124195930 124196038 + 2 NA intron (NM_001347902, intron 3 of 4) intron (NM_001347902, intron 3 of 4) -93180 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 677-63 chr4 97454881 97455375 + 2 NA intron (NR_102713, intron 3 of 5) L1MC|LINE|L1 88202 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 328-495 chr6 45976720 45976936 + 2 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 39032 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 281-299 chr3 170039070 170039253 + 2 NA intron (NM_014373, intron 2 of 3) intron (NM_014373, intron 2 of 3) 1166 NM_014373 26996 Hs.231320 NM_014373 ENSG00000173890 GPR160 GPCR1|GPCR150 G protein-coupled receptor 160 protein-coding 331-37 chr1 221945200 221945517 + 2 NA intron (NR_149057, intron 1 of 3) L1M1|LINE|L1 -21052 NR_149071 110806276 NR_149071 LINC02474 - long intergenic non-protein coding RNA 2474 ncRNA 589-3 chr1 84192319 84192790 + 2 NA intron (NM_001300915, intron 8 of 11) intron (NM_001300915, intron 8 of 11) 10922 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 327-397 chr5 64281169 64281368 + 2 NA intron (NM_001113561, intron 5 of 7) L1PA13|LINE|L1 115425 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 665-100 chr7 114032002 114032451 + 2 NA Intergenic L1MC5a|LINE|L1 -54101 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 339-199 chr16 64950163 64950353 + 2 NA intron (NM_001308392, intron 12 of 13) intron (NM_001308392, intron 12 of 13) 171805 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 391-166 chr2 45253253 45253555 + 2 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 1537 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 192-216 chr8 135000410 135000545 + 2 NA Intergenic Intergenic 150542 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 297-182 chr18 6463345 6463562 + 2 NA Intergenic L1MB5|LINE|L1 -47963 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 508-232 chr8 36903481 36903980 + 2 NA intron (NM_001031836, intron 19 of 26) THE1C|LTR|ERVL-MaLR 119356 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 267-373 chr6 74687076 74687291 + 2 NA intron (NR_110856, intron 3 of 3) L1MD2|LINE|L1 441599 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 241-214 chr20 8107795 8108007 + 2 NA Intergenic HAL1ME|LINE|L1 -24365 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 854-42 chr8 122224501 122225172 + 2 NA Intergenic L1ME3A|LINE|L1 343808 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 266-262 chr3 116623754 116623961 + 2 NA Intergenic L1MA3|LINE|L1 71384 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 409-92 chr15 59396549 59396754 + 2 NA Intergenic Intergenic -23780 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 242-335 chr6 13137186 13137401 + 2 NA intron (NM_001322308, intron 4 of 13) intron (NM_001322308, intron 4 of 13) 123739 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 114-51 chr5 50710898 50710968 + 2 NA intron (NM_024615, intron 2 of 25) (TATCTA)n|Simple_repeat|Simple_repeat 43519 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 447-163 chr3 30142180 30142554 + 2 NA Intergenic Intergenic -208211 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 279-435 chr9 24484838 24485061 + 2 NA Intergenic L1ME3B|LINE|L1 60727 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 536-189 chr5 143853756 143854224 + 2 NA Intergenic L1PA4|LINE|L1 41829 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 204-9 chr1 96464571 96464721 + 2 NA Intergenic Intergenic -90521 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 423-33 chr10 95001609 95001997 + 2 NA Intergenic L1M1|LINE|L1 63145 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 620-137 chr8 9506756 9507187 + 2 NA Intergenic AluSg|SINE|Alu -48941 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 368-429 chr7 79973798 79974056 + 2 NA Intergenic L1MC2|LINE|L1 -160904 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 236-382 chr9 75361779 75361981 + 2 NA Intergenic Intergenic 273366 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 384-89 chr12 104395790 104396163 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -60972 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 357-440 chr8 82794916 82795132 + 2 NA Intergenic Intergenic -117080 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 546-6 chr1 105965721 105966026 + 2 NA intron (NR_146609, intron 5 of 5) intron (NR_146609, intron 5 of 5) 62380 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 592-61 chr17 30195772 30196185 + 2 NA 3' UTR (NM_001045, exon 15 of 15) 3' UTR (NM_001045, exon 15 of 15) 39719 NM_001045 6532 Hs.29792 NM_001045 ENSG00000108576 SLC6A4 5-HTT|5-HTTLPR|5HTT|HTT|OCD1|SERT|SERT1|hSERT solute carrier family 6 member 4 protein-coding 393-47 chr10 130695561 130695821 + 2 NA Intergenic Intergenic 266977 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 573-56 chr12 129762485 129762883 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 141341 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 347-288 chr22 29994173 29994375 + 2 NA intron (NM_153051, intron 7 of 18) intron (NM_153051, intron 7 of 18) -12775 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 365-322 chr5 74831924 74832236 + 2 NA intron (NR_046462, intron 4 of 11) intron (NR_046462, intron 4 of 11) -33813 NR_134288 441086 Hs.653007 NR_134288 LOC441086 - uncharacterized LOC441086 ncRNA 310-380 chr4 134331330 134331612 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -92397 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 336-406 chr4 46306628 46306879 + 2 NA intron (NM_001114175, intron 5 of 8) LTR86A2|LTR|ERVL 82626 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 245-332 chr7 96966280 96966489 + 2 NA Intergenic Intergenic -39169 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 453-230 chr6 81969137 81969504 + 2 NA intron (NR_149135, intron 3 of 3) L2|LINE|L2 -30899 NR_149134 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 288-316 chr5 16408389 16408583 + 2 NA intron (NR_104625, intron 7 of 8) intron (NR_104625, intron 7 of 8) 32616 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 863-14 chr15 99518675 99519434 + 2 NA Intergenic AluJb|SINE|Alu -46363 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 324-244 chr19 53118592 53118888 + 2 NA intron (NM_001164309, intron 2 of 3) L1M2|LINE|L1 10969 NM_001352135 55786 Hs.147765 NM_018355 ENSG00000170954 ZNF415 Pact|ZfLp zinc finger protein 415 protein-coding 176-79 chr22 31050290 31050392 + 2 NA Intergenic Alu|SINE|Alu -30977 NM_006932 6525 Hs.149098 NM_006932 ENSG00000183963 SMTN - smoothelin protein-coding 353-555 chr9 35568147 35568394 + 2 NA Intergenic Intergenic -4392 NM_001287238 730112 Hs.98959 NM_001099951 ENSG00000215187 FAM166B - family with sequence similarity 166 member B protein-coding 246-162 chr18 6247157 6247346 + 2 NA intron (NR_158611, intron 4 of 16) L1MC4|LINE|L1 -9493 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 599-117 chr6 69986253 69986599 + 2 NA intron (NM_001858, intron 11 of 50) MER5A|DNA|hAT-Charlie 119870 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 356-40 chr10 10162543 10162843 + 2 NA Intergenic MIRc|SINE|MIR 103971 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 200-226 chr5 119554537 119554722 + 2 NA Intergenic L1M5|LINE|L1 -74929 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 292-344 chr5 26838056 26838247 + 2 NA Intergenic Intergenic 200435 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 321-15 chr1 89487713 89487932 + 2 NA Intergenic LTR47A2|LTR|ERVL -37007 NM_001134476 23507 Hs.482017 NM_015350 ENSG00000197147 LRRC8B TA-LRRP|TALRRP leucine rich repeat containing 8 VRAC subunit B protein-coding 381-30 chr1 229503838 229504195 + 2 NA intron (NM_018230, intron 2 of 25) intron (NM_018230, intron 2 of 25) 4325 NM_018230 55746 Hs.12457 NM_018230 ENSG00000069248 NUP133 GAMOS8|NPHS18|hNUP133 nucleoporin 133 protein-coding 378-416 chr7 104834850 104835062 + 2 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -30864 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 527-184 chr4 16373845 16374355 + 2 NA Intergenic LTR16B1|LTR|ERVL 147437 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 248-108 chr14 43328648 43328809 + 2 NA Intergenic Intergenic 1178555 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 380-252 chr3 97894370 97894607 + 2 NA intron (NM_153605, intron 11 of 21) intron (NM_153605, intron 11 of 21) 72477 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 591 chr1 29373836 29374230 + 2 NA Intergenic L1MA4|LINE|L1 -23919 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 227-181 chr2 128778907 128779113 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -85590 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 460-76 chr14 25549663 25549973 + 2 NA Intergenic L2c|LINE|L2 -499521 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 201-228 chr7 46861722 46861881 + 2 NA Intergenic Intergenic -164679 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 354-249 chr2 223325625 223325923 + 2 NA Intergenic Intergenic 273844 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 298-182 chr18 71262122 71262290 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 316750 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 339-8 chr1 49502384 49502634 + 2 NA intron (NR_136623, intron 2 of 12) THE1D-int|LTR|ERVL-MaLR -30424 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 388-325 chr7 53468873 53469148 + 2 NA Intergenic Intergenic 342921 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 306-331 chr3 163563750 163564017 + 2 NA Intergenic Intergenic -260582 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 470-91 chr16 73503688 73503963 + 2 NA Intergenic Intergenic 117020 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 356-232 chr2 40846320 40846643 + 2 NA Intergenic AluSp|SINE|Alu -334046 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 349-431 chr5 146987184 146987487 + 2 NA intron (NM_001271900, intron 2 of 10) L1MA6|LINE|L1 -67829 NR_047115 100874361 Hs.193825 NR_047115 ENSG00000249553 PPP2R2B-IT1 - PPP2R2B intronic transcript 1 ncRNA 333-550 chr7 110974892 110975060 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -116030 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 329-529 chr7 17700049 17700243 + 2 NA Intergenic L1MA9|LINE|L1 -141237 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 140-8 chr10 91619186 91619300 + 2 NA Intergenic L1ME3E|LINE|L1 -7783 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 345-290 chr2 154528281 154528465 + 2 NA Intergenic L1MA2|LINE|L1 -70935 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 319-551 chr8 130280060 130280237 + 2 NA intron (NM_001362925, intron 3 of 29) MIRc|SINE|MIR 16385 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 350-520 chr8 92461277 92461594 + 2 NA Intergenic Intergenic 194059 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 378-389 chr7 11184816 11185172 + 2 NA Intergenic Intergenic 211122 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 357-263 chr3 25237724 25237910 + 2 NA intron (NM_001290216, intron 4 of 10) MADE1|DNA|TcMar-Mariner -102985 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 305-434 chr5 46311730 46311923 + 2 NA Intergenic ALR/Alpha|Satellite|centr -615446 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 404-269 chr6 40032450 40032777 + 2 NA Intergenic Intergenic -98151 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 492-88 chr14 60545901 60546230 + 2 NA Intergenic L1MA5A|LINE|L1 36919 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 371-391 chr8 114484785 114485142 + 2 NA Intergenic L1MEg|LINE|L1 -1048024 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 191-74 chr17 30064221 30064373 + 2 NA intron (NM_198529, intron 14 of 22) L1MA5|LINE|L1 -52510 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 522-277 chrX 99443542 99443931 + 2 NA Intergenic L1MD1|LINE|L1 966537 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 271-398 chr7 14466982 14467247 + 2 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 374336 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 285-91 chr12 58402591 58402768 + 2 NA Intergenic L1MEc|LINE|L1 -189023 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 286-26 chr1 230499715 230499987 + 2 NA Intergenic L1MB8|LINE|L1 -73519 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 470-173 chr3 57350302 57350766 + 2 NA intron (NM_001366028, intron 60 of 73) L1ME3|LINE|L1 -57849 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 254-226 chr20 53169417 53169640 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -15755 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 308-323 chr4 38303223 38303380 + 2 NA Intergenic MER52A|LTR|ERV1 -63613 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 374-179 chr2 51616094 51616403 + 2 NA intron (NR_135237, intron 5 of 10) THE1C|LTR|ERVL-MaLR 583647 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 329-340 chr22 27492306 27492484 + 2 NA Intergenic L2a|LINE|L2 181744 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 543-25 chr10 5670936 5671300 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -4523 NM_024701 79754 Hs.445899 NM_024701 ENSG00000196372 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 222-58 chr11 23359382 23359596 + 2 NA Intergenic Intergenic 59701 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 274-107 chr13 22983326 22983526 + 2 NA Intergenic Intergenic -67057 NR_138043 100996930 Hs.380803 NR_138043 LINC00621 - long intergenic non-protein coding RNA 621 ncRNA 400-107 chr15 45639668 45640019 + 2 NA intron (NM_021199, intron 1 of 9) intron (NM_021199, intron 1 of 9) 4814 NM_021199 58472 Hs.511251 NM_021199 ENSG00000137767 SQOR CGI-44|PRO1975|SQR|SQRDL sulfide quinone oxidoreductase protein-coding 251-344 chr6 101083231 101083408 + 2 NA Intergenic Intergenic -201947 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 290-176 chr17 70190838 70191092 + 2 NA Intergenic Intergenic 21430 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 432-140 chr2 153762571 153762833 + 2 NA Intergenic Intergenic -109220 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 258-345 chr6 65425371 65425591 + 2 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 124063 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 114-6 chr10 81285812 81285898 + 2 NA Intergenic L1M4c|LINE|L1 -589339 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 436-308 chr8 107784903 107785174 + 2 NA Intergenic Intergenic -287120 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 257-119 chr14 86273762 86273948 + 2 NA Intergenic L1ME2|LINE|L1 339177 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 202-144 chr20 54817239 54817418 + 2 NA Intergenic L3|LINE|CR1 341735 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 548-175 chr5 7330610 7331033 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 17156 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 296-214 chr2 36206891 36207167 + 2 NA Intergenic MIR3|SINE|MIR 148541 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 135-36 chr2 145215950 145216078 + 2 NA Intergenic Intergenic 548047 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 194-161 chr5 16987704 16987855 + 2 NA Intergenic Intergenic -51491 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 346-173 chr16 9392181 9392473 + 2 NA intron (NR_135195, intron 1 of 2) intron (NR_135195, intron 1 of 2) 36739 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 225-22 chr1 232409843 232410007 + 2 NA intron (NM_020808, intron 17 of 20) intron (NM_020808, intron 17 of 20) 105683 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 298-478 chr8 127322468 127322679 + 2 NA intron (NR_117099, intron 2 of 3) MSTB-int|LTR|ERVL-MaLR -77826 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 305-46 chr1 237301264 237301531 + 2 NA intron (NM_001035, intron 2 of 104) intron (NM_001035, intron 2 of 104) -169722 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 339-361 chr3 69497100 69497323 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -111123 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 382-194 chr2 65810112 65810422 + 2 NA Intergenic L1ME3Cz|LINE|L1 -377668 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 516-34 chr11 69424253 69424663 + 2 NA Intergenic Intergenic -1197 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 304-362 chr3 175273052 175273320 + 2 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) -2090 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 244-175 chr2 136608792 136609032 + 2 NA Intergenic Intergenic -156633 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 174-47 chr15 80507771 80507887 + 2 NA intron (NM_014862, intron 5 of 18) L2|LINE|L2 55115 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 263-160 chr17 75814345 75814568 + 2 NA intron (NM_001080419, intron 6 of 15) AluSz|SINE|Alu 29617 NR_038131 85451 Hs.584768 NM_001080419 ENSG00000132478 UNK UNKEMPT|ZC3H5|ZC3HDC5 unk zinc finger protein-coding 563-77 chr19 27512140 27512682 + 2 NA Intergenic ALR/Alpha|Satellite|centr -281020 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 368-227 chr2 38019634 38019863 + 2 NA intron (NM_144713, intron 10 of 10) AluJb|SINE|Alu 16593 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 356-223 chr2 7593610 7593903 + 2 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat 172495 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 354-401 chr6 88032922 88033141 + 2 NA Intergenic L1MC2|LINE|L1 -14810 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 229-57 chr11 18018977 18019179 + 2 NA Intergenic Intergenic -5916 NR_104041 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 525-54 chr12 29261386 29261739 + 2 NA intron (NM_001271784, intron 1 of 10) L1MA3|LINE|L1 37896 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 624-23 chr11 72509529 72509951 + 2 NA Intergenic L1PA13|LINE|L1 -60916 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 323-427 chr5 104462210 104462524 + 2 NA Intergenic L1MA2|LINE|L1 -637107 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 246-328 chr5 58397177 58397331 + 2 NA Intergenic L1M6|LINE|L1 62832 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 377-355 chr6 155886767 155887052 + 2 NA Intergenic MLT2B2|LTR|ERVL -59888 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 467-276 chr8 58216458 58216849 + 2 NA Intergenic Intergenic 55448 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 592-80 chr2 34416831 34417365 + 2 NA Intergenic Intergenic -260459 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 421-104 chr16 86103647 86103944 + 2 NA Intergenic Intergenic -92386 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 363-359 chr5 46302389 46302706 + 2 NA Intergenic ALR/Alpha|Satellite|centr -606167 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 235-61 chr11 33487734 33487900 + 2 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 111709 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 338-321 chr22 47958466 47958727 + 2 NA Intergenic L1MD3|LINE|L1 -315768 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 327-209 chr18 7099944 7100212 + 2 NA intron (NM_005559, intron 1 of 62) AluY|SINE|Alu 17719 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 412-69 chr12 38828521 38828907 + 2 NA intron (NM_153634, intron 6 of 19) intron (NM_153634, intron 6 of 19) 76877 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 387-113 chr14 89597408 89597617 + 2 NA intron (NM_001085471, intron 1 of 6) L1MEg|LINE|L1 21296 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 365-430 chr9 116921833 116922110 + 2 NA intron (NM_014010, intron 9 of 21) MSTA|LTR|ERVL-MaLR 234666 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 440-64 chr14 35898977 35899410 + 2 NA Intergenic L1MC5|LINE|L1 72855 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 432-168 chr22 48182339 48182631 + 2 NA Intergenic Intergenic -91879 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 258-247 chr22 45458692 45458860 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -44107 NM_001996 2192 Hs.24601 NM_001996 ENSG00000077942 FBLN1 FBLN|FIBL1 fibulin 1 protein-coding 603-5 chr1 81906215 81906599 + 2 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 103954 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 528-147 chr20 42805546 42805934 + 2 NA intron (NM_133170, intron 2 of 31) L1M6|LINE|L1 120257 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 372-377 chr4 120953414 120953667 + 2 NA Intergenic LTR8B|LTR|ERV1 -30674 NM_018699 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 323-223 chr19 56462637 56462821 + 2 NA intron (NM_022103, intron 1 of 4) L2a|LINE|L2 14616 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 593-84 chr2 224351998 224352454 + 2 NA Intergenic L1ME5|LINE|L1 49768 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 301-66 chr11 54956125 54956330 + 2 NA Intergenic ALR/Alpha|Satellite|centr 249395 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 346-317 chr3 75163047 75163231 + 2 NA Intergenic Intergenic -51337 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 391-327 chr7 39572872 39573202 + 2 NA TTS (NM_020192) TTS (NM_020192) 6633 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 608-144 chr7 45921785 45922343 + 2 NA promoter-TSS (NM_000598) promoter-TSS (NM_000598) -792 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 196-28 chr10 34007787 34007956 + 2 NA Intergenic Intergenic -235191 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 687-48 chr16 83617976 83618387 + 2 NA intron (NM_001220489, intron 7 of 12) AluSx|SINE|Alu 109835 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 294-408 chr6 86453920 86454079 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -483529 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 455-50 chr11 40315369 40315693 + 2 NA intron (NM_001258419, intron 4 of 6) L1ME4a|LINE|L1 -22401 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 238-262 chr4 52934681 52934867 + 2 NA intron (NM_152540, intron 5 of 8) L1ME3Cz|LINE|L1 72457 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 355-25 chr1 219260671 219260863 + 2 NA Intergenic Intergenic 85798 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 289-358 chr5 4598387 4598658 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -174959 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 223-256 chr4 115603786 115603947 + 2 NA Intergenic Intergenic -490246 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 528-240 chr7 123513423 123513765 + 2 NA intron (NR_104245, intron 1 of 11) L1ME1|LINE|L1 19354 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 379-320 chr7 89797030 89797293 + 2 NA Intergenic L1PA13|LINE|L1 -322239 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 323-531 chr8 42887357 42887603 + 2 NA intron (NM_001160225, intron 2 of 6) intron (NM_001160225, intron 2 of 6) 8795 NR_039679 100616115 NR_039679 ENSG00000284062 MIR4469 mir-4469 microRNA 4469 ncRNA 143-57 chr4 5776023 5776116 + 2 NA intron (NM_001306090, intron 11 of 20) L1ME3B|LINE|L1 64868 NM_001306090 2121 Hs.646899 NM_014556 ENSG00000072840 EVC DWF-1|EVC1|EVCL EvC ciliary complex subunit 1 protein-coding 671-69 chr3 185022926 185023350 + 2 NA intron (NM_001009921, intron 44 of 46) L1ME1|LINE|L1 129922 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 294-41 chr10 63870145 63870322 + 2 NA Intergenic L1ME1|LINE|L1 -348343 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 205-288 chr8 136670611 136670776 + 2 NA intron (NR_147196, intron 2 of 5) MIRb|SINE|MIR 139895 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 115-25 chr20 54201423 54201519 + 2 NA Intergenic Intergenic -6616 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 328-173 chr15 49603863 49604080 + 2 NA intron (NM_001330293, intron 3 of 10) L1MA2|LINE|L1 16847 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 246-170 chr18 43369329 43369493 + 2 NA Intergenic Intergenic -91921 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 202-58 chr13 92290106 92290269 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 62020 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 259-347 chr6 80986116 80986368 + 2 NA Intergenic L1MA10|LINE|L1 766439 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 647-67 chr3 133696221 133696788 + 2 NA intron (NM_001354703, intron 2 of 22) intron (NM_001354703, intron 2 of 22) 34506 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 278-241 chr2 213387006 213387265 + 2 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 102671 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 452-195 chr4 113134558 113134949 + 2 NA intron (NM_001354237, intron 1 of 46) intron (NM_001354237, intron 1 of 46) -17529 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 424-177 chr3 97987715 97988068 + 2 NA intron (NM_001105580, intron 9 of 9) AluJr|SINE|Alu -15440 NM_001042533 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 409-130 chr2 10514263 10514561 + 2 NA Intergenic Intergenic 64684 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 350-479 chr7 49920365 49920581 + 2 NA 3' UTR (NM_198570, exon 4 of 4) 3' UTR (NM_198570, exon 4 of 4) 145140 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 324-395 chr4 77330728 77330898 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 173606 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 424-61 chr13 65538453 65538754 + 2 NA Intergenic Intergenic -327444 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 558-149 chr4 31942156 31942488 + 2 NA Intergenic Intergenic -55057 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 628-13 chr1 112085432 112085915 + 2 NA Intergenic Intergenic 95137 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 185-61 chr14 62198157 62198295 + 2 NA Intergenic L1MC1|LINE|L1 -58253 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 205-115 chr17 34469955 34470149 + 2 NA Intergenic Intergenic -106819 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 182-115 chr3 182082195 182082327 + 2 NA Intergenic Intergenic 129897 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 383-136 chr16 2013285 2013546 + 2 NA Intergenic 7SLRNA|srpRNA|srpRNA -3594 NM_178167 90850 Hs.343828 NM_178167 ENSG00000167962 ZNF598 HEL2 zinc finger protein 598 protein-coding 339-318 chr20 42258581 42258914 + 2 NA intron (NM_007050, intron 13 of 30) intron (NM_007050, intron 13 of 30) -426736 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 401-182 chr2 231453504 231453844 + 2 NA 3' UTR (NM_005381, exon 14 of 14) 3' UTR (NM_005381, exon 14 of 14) 2262 NR_002921 654321 Hs.674388 NR_002921 ENSG00000206885 SNORA75 SNORA75A|U23 small nucleolar RNA, H/ACA box 75 snoRNA 707-3 chr1 41093716 41094291 + 2 NA intron (NM_001172222, intron 4 of 10) Charlie1a|DNA|hAT-Charlie 67429 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 325-336 chr3 10649291 10649577 + 2 NA Intergenic L2c|LINE|L2 -22627 NR_046766 100874325 Hs.143004 NR_046766 ENSG00000224771 ATP2B2-IT2 - ATP2B2 intronic transcript 2 ncRNA 257 chr1 29564358 29564560 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 -214345 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 439-223 chr5 11283061 11283406 + 2 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 305684 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 587-92 chr20 59669523 59669988 + 2 NA intron (NM_001281507, intron 1 of 12) L1MB7|LINE|L1 -6906 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 315-188 chr17 19621621 19621907 + 2 NA Intergenic L1M4|LINE|L1 -26386 NM_001369137 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 374-400 chr8 129270029 129270302 + 2 NA Intergenic Intergenic -28925 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 324-282 chr2 139991411 139991699 + 2 NA Intergenic L1PA15|LINE|L1 595130 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 331-9 chr1 87270683 87270915 + 2 NA Intergenic Intergenic -58081 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 608-87 chr20 57842439 57842955 + 2 NA Intergenic Intergenic -131161 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 563-173 chr7 52252852 52253241 + 2 NA Intergenic L2a|LINE|L2 -782587 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 227-201 chr20 23232479 23232661 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -99934 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 381-103 chr14 41257887 41258185 + 2 NA Intergenic Arthur1A|DNA|hAT-Tip100 303325 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 405-59 chr12 41570601 41570941 + 2 NA intron (NM_001164595, intron 9 of 9) intron (NM_001164595, intron 9 of 9) 133032 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 524-39 chr11 32349393 32349865 + 2 NA Intergenic MIRb|SINE|MIR 50771 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 386-276 chr5 4369686 4369948 + 2 NA Intergenic Intergenic -403664 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 225-272 chr5 29637444 29637662 + 2 NA Intergenic L1MA6|LINE|L1 -241577 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 338-70 chr10 76687074 76687392 + 2 NA Intergenic Intergenic -200811 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 303-220 chr2 128074481 128074678 + 2 NA Intergenic L1MC4a|LINE|L1 -16621 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 712-92 chr7 153065875 153066578 + 2 NA Intergenic Intergenic 306474 NM_020445 57180 Hs.647117 NM_020445 ENSG00000133627 ACTR3B ARP11|ARP3BETA actin related protein 3B protein-coding 270-384 chr8 82978794 82978994 + 2 NA Intergenic Intergenic 66790 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 298-449 chr8 31530640 31530832 + 2 NA Intergenic HAL1|LINE|L1 -109016 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 116 chr1 41004178 41004280 + 2 NA intron (NR_125440, intron 12 of 17) intron (NR_125440, intron 12 of 17) -10361 NR_037868 100507178 Hs.660056 NR_037868 ENSG00000281207 SLFNL1-AS1 - SLFNL1 antisense RNA 1 ncRNA 687-97 chr5 124116386 124116919 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 321868 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 253-13 chr1 101961274 101961484 + 2 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 35855 NM_001288823 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 535-144 chr2 199206078 199206572 + 2 NA Intergenic Intergenic 251614 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 405-246 chr5 46118064 46118412 + 2 NA Intergenic Intergenic -421858 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 340-529 chr8 65391273 65391529 + 2 NA Intergenic Intergenic 171265 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 320-434 chr5 38896792 38896983 + 2 NA intron (NM_003999, intron 7 of 17) L1M1|LINE|L1 50875 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 441-228 chr6 88373005 88373404 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 166165 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 479-277 chr9 94215932 94216247 + 2 NA intron (NR_160773, intron 1 of 2) MER6|DNA|TcMar-Tigger -11523 NR_046163 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 531-67 chr15 60894525 60895034 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 213210 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 362-409 chr7 104613273 104613548 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 190682 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 209-148 chr2 57187023 57187185 + 2 NA Intergenic L1PA16|LINE|L1 -720547 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 425-60 chr11 106867408 106867779 + 2 NA intron (NM_001256424, intron 4 of 8) intron (NM_001256424, intron 4 of 8) 150883 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 342-212 chr19 39759535 39759822 + 2 NA Intergenic AluJo|SINE|Alu -16916 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 428-92 chr17 60835413 60835785 + 2 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 157748 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 166-15 chr12 5479057 5479200 + 2 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) -15004 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 377-401 chr8 83476265 83476603 + 2 NA Intergenic L1MA9|LINE|L1 72676 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 347-150 chr15 60287904 60288207 + 2 NA Intergenic Intergenic 109931 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 494-295 chr8 120778992 120779456 + 2 NA intron (NM_021021, intron 1 of 6) AluSc|SINE|Alu 17971 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 201-97 chr16 65215489 65215654 + 2 NA Intergenic Intergenic -38998 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 306-246 chr2 112915125 112915342 + 2 NA promoter-TSS (NM_173205) promoter-TSS (NM_173205) 40 NM_173205 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 200-15 chr1 188204158 188204310 + 2 NA Intergenic Intergenic 760606 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 385-105 chr14 99576156 99576356 + 2 NA intron (NM_001144995, intron 1 of 5) intron (NM_001144995, intron 1 of 5) 27951 NM_001144995 317762 Hs.709288 NM_001144995 ENSG00000205476 CCDC85C - coiled-coil domain containing 85C protein-coding 212-95 chr14 32668285 32668472 + 2 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -270501 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 401-338 chr9 8109969 8110217 + 2 NA Intergenic MIRb|SINE|MIR -310315 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 368-333 chr4 69706323 69706621 + 2 NA Intergenic Intergenic -53225 NM_001252274 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 278-53 chr11 63603185 63603424 + 2 NA intron (NM_007069, intron 1 of 3) intron (NM_007069, intron 1 of 3) 11133 NM_007069 11145 Hs.502775 NM_007069 ENSG00000176485 PLAAT3 AdPLA|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3 phospholipase A and acyltransferase 3 protein-coding 231-368 chr8 136781664 136781863 + 2 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 250965 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 395-246 chr4 29905083 29905313 + 2 NA Intergenic Intergenic 690906 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 349-21 chr1 100236310 100236582 + 2 NA intron (NM_001918, intron 2 of 10) intron (NM_001918, intron 2 of 10) 13388 NM_001918 1629 Hs.709187 NM_001918 ENSG00000137992 DBT BCATE2|BCKAD-E2|BCKADE2|BCOADC-E2|E2|E2B dihydrolipoamide branched chain transacylase E2 protein-coding 223-375 chrX 43208024 43208193 + 2 NA intron (NR_110387, intron 4 of 5) MSTA-int|LTR|ERVL-MaLR 31114 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 480-298 chr8 117252618 117253051 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 117839 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 363-228 chr2 143921080 143921436 + 2 NA Intergenic L1MEd|LINE|L1 -15809 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 375-203 chr2 37791812 37792013 + 2 NA Intergenic HAL1|LINE|L1 37799 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 347-493 chr8 41048355 41048569 + 2 NA Intergenic Intergenic -150636 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 360-414 chr6 97555657 97555918 + 2 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 250201 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 315-158 chr15 91634304 91634591 + 2 NA Intergenic Intergenic 171108 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 277-350 chr6 65366300 65366564 + 2 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 65014 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 393-266 chr5 13278843 13279229 + 2 NA Intergenic Intergenic -246150 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 749-53 chr2 132990308 132990811 + 2 NA intron (NM_207481, intron 7 of 17) MLT1D|LTR|ERVL-MaLR 75002 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 309-321 chr21 30938088 30938353 + 2 NA Intergenic MER20|DNA|hAT-Charlie -56640 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 403-222 chr4 65678866 65679087 + 2 NA intron (NR_034138, intron 2 of 3) THE1B-int|LTR|ERVL-MaLR -8481 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 474-56 chr12 11568403 11568851 + 2 NA Intergenic Intergenic 20597 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 327-349 chr3 181947072 181947336 + 2 NA Intergenic MIRb|SINE|MIR -5160 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 448-46 chr11 25896054 25896378 + 2 NA Intergenic Intergenic -292907 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 325-138 chr12 104143519 104143704 + 2 NA Intergenic Intergenic -5401 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 588-123 chr5 65770398 65770766 + 2 NA intron (NM_020726, intron 3 of 12) L1MC4|LINE|L1 48377 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 227-156 chr2 3773494 3773642 + 2 NA intron (NM_001287444, intron 8 of 10) intron (NM_001287444, intron 8 of 10) 66726 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 215-206 chr3 141667157 141667324 + 2 NA intron (NR_136190, intron 2 of 7) L1ME3Cz|LINE|L1 4041 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 213-109 chr16 75883941 75884126 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -157543 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 256-159 chr17 33137198 33137368 + 2 NA intron (NM_001094, intron 1 of 9) MER103C|DNA|hAT-Charlie 144432 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 414-172 chr2 173838114 173838450 + 2 NA Intergenic Intergenic 125598 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 338-145 chr13 35520527 35520852 + 2 NA intron (NM_001204197, intron 1 of 17) intron (NM_001204197, intron 1 of 17) 43940 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 372-111 chr12 42776957 42777161 + 2 NA Intergenic Intergenic 84843 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 172-63 chr2 122560249 122560367 + 2 NA Intergenic Intergenic 513173 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 183-44 chr13 88531208 88531378 + 2 NA Intergenic L1MB8|LINE|L1 -9536 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 500-83 chr14 71309268 71309647 + 2 NA Intergenic MIRb|SINE|MIR -11019 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 369-191 chr2 40456562 40456816 + 2 NA intron (NM_001112802, intron 1 of 7) MIR|SINE|MIR -4599 NM_001351493 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 157-101 chr5 6452135 6452258 + 2 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 3337 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 298-271 chr21 30424457 30424692 + 2 NA TTS (NM_181622) TTS (NM_181622) 1352 NM_181622 337960 Hs.553687 NM_181622 ENSG00000240432 KRTAP13-3 KAP13.3 keratin associated protein 13-3 protein-coding 346-131 chr14 46114479 46114775 + 2 NA intron (NR_102702, intron 1 of 3) L1MA3|LINE|L1 50468 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 324-552 chr8 131521441 131521649 + 2 NA Intergenic Intergenic -382548 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 321-76 chr10 94834187 94834404 + 2 NA intron (NM_000769, intron 6 of 8) L1MA1|LINE|L1 71614 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 314-248 chr18 78767246 78767528 + 2 NA Intergenic (ACCTGTG)n|Simple_repeat|Simple_repeat -212888 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 316-202 chr16 63310685 63310961 + 2 NA Intergenic Intergenic -1274385 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 218-147 chr2 51903398 51903549 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -467175 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 357-235 chr20 15690054 15690396 + 2 NA intron (NM_001351663, intron 8 of 17) L2a|LINE|L2 233089 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 260-193 chr19 37724481 37724673 + 2 NA Intergenic L1MEc|LINE|L1 -4816 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 309-402 chr4 91833043 91833236 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 444163 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 253-241 chr22 43685798 43685954 + 2 NA intron (NM_198856, intron 9 of 29) Ricksha_b|DNA|MULE-MuDR 126429 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 273-67 chr10 123693402 123693667 + 2 NA 3' UTR (NM_153442, exon 3 of 3) 3' UTR (NM_153442, exon 3 of 3) 27179 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 349-438 chr6 20941495 20941684 + 2 NA intron (NM_017774, intron 9 of 15) intron (NM_017774, intron 9 of 15) 407132 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 117-15 chr19 37969542 37969641 + 2 NA intron (NM_015073, intron 1 of 21) L2c|LINE|L2 62383 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 162-52 chr2 15485445 15485574 + 2 NA intron (NR_052013, intron 12 of 50) MIRb|SINE|MIR 75825 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 437-57 chr12 129740627 129740997 + 2 NA intron (NM_133448, intron 1 of 8) Tigger10|DNA|TcMar-Tigger 163213 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 232-278 chr4 135023201 135023394 + 2 NA Intergenic Intergenic 100262 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 357-48 chr10 111253811 111254161 + 2 NA Intergenic L1MB3|LINE|L1 139695 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 257-245 chr21 15336435 15336613 + 2 NA Intergenic L1PA17|LINE|L1 -271524 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 314-79 chr10 122908930 122909169 + 2 NA Intergenic Intergenic -1561 NM_001029888 118670 Hs.369829 NM_001029888 ENSG00000203795 FAM24A - family with sequence similarity 24 member A protein-coding 378-55 chr10 44004669 44004990 + 2 NA Intergenic Intergenic 92427 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 750-76 chr9 81337254 81337830 + 2 NA Intergenic L1MEi|LINE|L1 351993 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 308-65 chr10 83695211 83695404 + 2 NA Intergenic Intergenic -18218 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 343-92 chr12 2364662 2364864 + 2 NA intron (NM_199460, intron 3 of 49).2 L3|LINE|CR1 94987 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 316-219 chr18 4955655 4955813 + 2 NA Intergenic L1PB1|LINE|L1 -125448 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 495-101 chr2 24604321 24604658 + 2 NA intron (NM_001362950, intron 3 of 23) Tigger1|DNA|TcMar-Tigger 20012 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 242-98 chr13 104899258 104899420 + 2 NA Intergenic L1MA8|LINE|L1 -566528 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 377-338 chr5 155084826 155085063 + 2 NA Intergenic MIRb|SINE|MIR 71189 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 340-554 chr8 130922800 130923115 + 2 NA intron (NM_001115, intron 5 of 17) MIRb|SINE|MIR 117952 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 253-268 chr3 117229638 117229805 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 308290 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 261-114 chr14 87464898 87465135 + 2 NA Intergenic Intergenic 190278 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 213-64 chr12 6791767 6791878 + 2 NA intron (NM_001195016, intron 1 of 7) AluJb|SINE|Alu 2294 NM_001195015 920 Hs.631659 NM_000616 ENSG00000010610 CD4 CD4mut CD4 molecule protein-coding 287-417 chr8 118950124 118950386 + 2 NA intron (NM_002546, intron 1 of 4) L1ME3A|LINE|L1 1630 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 405-266 chr5 160336072 160336392 + 2 NA intron (NR_131769, intron 1 of 7) MLT1C|LTR|ERVL-MaLR 3360 NR_131769 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 253-380 chr7 33836551 33836754 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -68263 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 227-104 chr14 48876484 48876667 + 2 NA Intergenic Intergenic 709805 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 249-344 chr5 134786454 134786651 + 2 NA intron (NM_001300860, intron 11 of 22) intron (NM_001300860, intron 11 of 22) 27773 NM_001300860 9879 Hs.406549 NM_014829 ENSG00000145833 DDX46 PRPF5|Prp5 DEAD-box helicase 46 protein-coding 264-275 chr3 74459389 74459618 + 2 NA intron (NM_020872, intron 3 of 21) L2c|LINE|L2 61637 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 305-338 chr3 13757082 13757255 + 2 NA Intergenic L1PA15|LINE|L1 106447 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 411-83 chr14 37100906 37101269 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -70939 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 460-87 chr14 98540731 98541166 + 2 NA Intergenic Intergenic -170665 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 303-330 chr4 129492367 129492624 + 2 NA Intergenic L1MC3|LINE|L1 278983 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 339-303 chr2 227429154 227429440 + 2 NA Intergenic Intergenic -42835 NR_049888 100847081 NR_049888 ENSG00000284092 MIR5703 mir-5703 microRNA 5703 ncRNA 191-117 chr2 226522175 226522308 + 2 NA Intergenic Intergenic 136552 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 228-377 chr9 123840817 123840985 + 2 NA intron (NM_001352968, intron 2 of 18) intron (NM_001352968, intron 2 of 18) 89225 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 273-480 chrX 62936822 62937015 + 2 NA Intergenic MER92-int|LTR|ERV1 414414 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 391-331 chr7 81649591 81649964 + 2 NA intron (NR_126025, intron 1 of 10) intron (NR_126025, intron 1 of 10) -23561 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 366-54 chr10 76996858 76997150 + 2 NA intron (NM_001322838, intron 19 of 29) intron (NM_001322838, intron 19 of 29) 108960 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 296-301 chr3 99326999 99327183 + 2 NA Intergenic MLT2B4|LTR|ERVL -311503 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 354-269 chr21 28537454 28537655 + 2 NA Intergenic Intergenic -1764 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 235-132 chr17 3356501 3356697 + 2 NA Intergenic Intergenic 41811 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 387-333 chr7 10611022 10611373 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -91479 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 239-196 chr2 163996616 163996787 + 2 NA Intergenic Intergenic -260693 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 322-322 chr3 37217753 37217951 + 2 NA Intergenic MER52A|LTR|ERV1 -25419 NM_001172713 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 229-201 chr2 147648582 147648775 + 2 NA Intergenic Intergenic -195839 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 427-83 chr15 91398083 91398422 + 2 NA Intergenic L1MA9|LINE|L1 -65087 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 575-93 chr2 147725951 147726487 + 2 NA Intergenic L1M2|LINE|L1 -118298 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 342-330 chr3 106708445 106708760 + 2 NA Intergenic Intergenic 532036 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 305-417 chr5 4149695 4149879 + 2 NA Intergenic Intergenic 553955 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 252-321 chr5 24274548 24274703 + 2 NA Intergenic Intergenic 323277 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 355-121 chr12 3991975 3992317 + 2 NA Intergenic Intergenic -118698 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 351-362 chr4 172732322 172732614 + 2 NA intron (NM_001034845, intron 5 of 12) L1MA4|LINE|L1 -5590 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 201-131 chr2 181203545 181203663 + 2 NA intron (NR_130784, intron 1 of 4) ERVL-B4-int|LTR|ERVL 79767 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 599-116 chr6 61258287 61258723 + 2 NA Intergenic L1PA15|LINE|L1 -315625 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 478-193 chr3 103278244 103278671 + 2 NA Intergenic Intergenic 245659 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 262-436 chr8 121194179 121194361 + 2 NA Intergenic Intergenic -382224 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 292-131 chr14 24783931 24784205 + 2 NA Intergenic Intergenic -149878 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 716-93 chr9 100753804 100754325 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 175985 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 674-21 chr12 14892133 14892761 + 2 NA Intergenic AluSz|SINE|Alu -6593 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 266-202 chr2 172278279 172278436 + 2 NA Intergenic Intergenic -148979 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 299-143 chr14 82897551 82897730 + 2 NA Intergenic Intergenic 255008 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 515-35 chr11 22010396 22010863 + 2 NA Intergenic Intergenic -182456 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 231-154 chr2 33898102 33898265 + 2 NA intron (NR_126403, intron 2 of 5) L1MA8|LINE|L1 -169043 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 258-244 chr22 24557081 24557239 + 2 NA intron (NR_103819, intron 1 of 2) MER3|DNA|hAT-Charlie 1161 NM_004175 6634 Hs.356549 NM_004175 ENSG00000100028 SNRPD3 SMD3|Sm-D3 small nuclear ribonucleoprotein D3 polypeptide protein-coding 121-79 chrX 93900846 93900940 + 2 NA Intergenic Intergenic 226687 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 294-173 chr18 13330885 13331134 + 2 NA intron (NM_181482, intron 2 of 5) MER21B|LTR|ERVL 52904 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 366-153 chr16 56081286 56081469 + 2 NA Intergenic Intergenic 109717 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 230-188 chr2 176521247 176521432 + 2 NA Intergenic L1MEd|LINE|L1 79713 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 230-400 chr9 118241025 118241247 + 2 NA Intergenic Intergenic -438535 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 313-47 chr10 62140505 62140703 + 2 NA Intergenic AluJr|SINE|Alu 91247 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 225-375 chr8 125531800 125531956 + 2 NA Intergenic MER21C|LTR|ERVL 99669 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 478-198 chr3 137436848 137437279 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -327252 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 272-429 chr7 89891301 89891486 + 2 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -228007 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 526-223 chr6 166159646 166160131 + 2 NA intron (NM_001366285, intron 7 of 7) intron (NM_001366285, intron 7 of 7) 7963 NM_001366285 6862 Hs.389457 NM_003181 ENSG00000164458 TBXT SAVA|T|TFT T-box transcription factor T protein-coding 352-336 chr3 155262697 155263021 + 2 NA Intergenic Intergenic 21914 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 629-5 chr1 82544540 82545057 + 2 NA Intergenic L1MA7|LINE|L1 -358385 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 239-307 chr5 28947491 28947716 + 2 NA Intergenic L1ME1|LINE|L1 20733 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 438-153 chr20 60755070 60755361 + 2 NA Intergenic Intergenic 190653 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 363-484 chrX 58340272 58340466 + 2 NA Intergenic ALR/Alpha|Satellite|centr -429736 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 717-44 chr2 115439553 115440164 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 96043 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 515-258 chr7 115629747 115630212 + 2 NA Intergenic Intergenic -48538 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 184-28 chr10 67091231 67091383 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 79041 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 261-243 chr3 83929511 83929709 + 2 NA Intergenic MER61-int|LTR|ERV1 939965 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 259-424 chr8 141747622 141747819 + 2 NA Intergenic L1ME1|LINE|L1 38593 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 538-150 chr3 94865038 94865317 + 2 NA Intergenic L1PA16|LINE|L1 -73086 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 409-96 chr15 80392010 80392416 + 2 NA Intergenic L1MC4|LINE|L1 -12169 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 501-263 chr8 91883030 91883487 + 2 NA Intergenic MIRb|SINE|MIR 134422 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 291-7 chr1 81396749 81396927 + 2 NA intron (NM_001366003, intron 2 of 27) L1MA5|LINE|L1 90443 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 146-70 chr5 19291096 19291213 + 2 NA Intergenic MER70C|LTR|ERVL 595118 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 314-407 chr4 30426157 30426334 + 2 NA Intergenic Intergenic -294124 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 558-120 chr21 20233544 20234050 + 2 NA Intergenic L1MA5|LINE|L1 24888 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 179-23 chr13 84312447 84312600 + 2 NA intron (NR_046871, intron 3 of 6) MLT1G3|LTR|ERVL-MaLR 171921 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 183-32 chr12 30271255 30271364 + 2 NA Intergenic Intergenic 405935 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 370-164 chr15 94864467 94864802 + 2 NA Intergenic Intergenic 9271 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 303-179 chr18 69763600 69763868 + 2 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 184139 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 251-411 chr9 8609616 8609852 + 2 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 124212 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 341-372 chr4 32373149 32373375 + 2 NA Intergenic Intergenic 22224 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 262-109 chr13 69688934 69689112 + 2 NA Intergenic Intergenic -418190 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 539-163 chr5 19973622 19973956 + 2 NA intron (NM_001349562, intron 2 of 13) L2|LINE|L2 14411 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 334-210 chr17 61980544 61980772 + 2 NA intron (NM_005121, intron 16 of 29) L2a|LINE|L2 -52676 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 318-505 chr7 44676557 44676761 + 2 NA TTS (NM_001003941) TTS (NM_001003941) 70032 NM_002541 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 255-186 chr2 13810352 13810591 + 2 NA Intergenic Intergenic 590487 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 303-115 chr14 25332512 25332775 + 2 NA Intergenic L1MA4A|LINE|L1 -282346 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 274-364 chr7 112646035 112646195 + 2 NA intron (NR_110158, intron 5 of 7) L1PA8A|LINE|L1 23734 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 313-274 chr2 123157908 123158195 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -84570 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 343-15 chr1 88621650 88621831 + 2 NA intron (NR_110682, intron 1 of 3) L1PREC2|LINE|L1 -62404 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 460-146 chr2 115188819 115189265 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 26887 NM_001004360 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 205-284 chr8 128190574 128190745 + 2 NA Intergenic Intergenic 40543 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 622-142 chr8 124650066 124650677 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 78102 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 314-17 chr1 78545681 78545891 + 2 NA Intergenic Intergenic 54812 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 402-137 chr2 16121497 16121876 + 2 NA Intergenic Intergenic 71259 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 448-89 chr15 87391170 87391531 + 2 NA Intergenic Intergenic -185579 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 190-81 chr2 13954470 13954624 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger 446411 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 241-113 chr14 64995408 64995604 + 2 NA intron (NM_002028, intron 1 of 11) Tigger3b|DNA|TcMar-Tigger 8611 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 180-135 chr5 60579140 60579250 + 2 NA Intergenic LTR41B|LTR|ERVL -82909 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 270-334 chr6 62885300 62885504 + 2 NA Intergenic MIR|SINE|MIR 434575 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 431-265 chr7 24015220 24015578 + 2 NA Intergenic L1MB1|LINE|L1 -268791 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 484-172 chr3 66982269 66982612 + 2 NA Intergenic MIR3|SINE|MIR -15867 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 399-4 chr1 75649243 75649569 + 2 NA Intergenic Intergenic -33243 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 643-119 chr7 91815565 91816151 + 2 NA Intergenic Intergenic 64844 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 293-58 chr11 41841186 41841363 + 2 NA Intergenic L1MEd|LINE|L1 126706 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 354-108 chr12 85110014 85110256 + 2 NA intron (NM_001079910, intron 15 of 26) intron (NM_001079910, intron 15 of 26) 73784 NM_001079910 84125 Hs.402200 NM_032165 ENSG00000133640 LRRIQ1 - leucine rich repeats and IQ motif containing 1 protein-coding 526-127 chr2 97989006 97989528 + 2 NA intron (NM_015348, intron 1 of 40) intron (NM_015348, intron 1 of 40) 6681 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 300-351 chr5 22395577 22395798 + 2 NA intron (NM_001364104, intron 2 of 13) L2c|LINE|L2 -181837 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 232-306 chr5 67377631 67377822 + 2 NA Intergenic Intergenic -180927 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 171-133 chr8 35429505 35429601 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -114839 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 269-333 chr6 6080766 6080970 + 2 NA Intergenic L2|LINE|L2 -73263 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 361-210 chr2 39859799 39860057 + 2 NA Intergenic L1M5|LINE|L1 -57706 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 301-434 chr8 10588018 10588313 + 2 NA Intergenic Intergenic 62633 NM_198464 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 496-205 chr5 13828971 13829313 + 2 NA intron (NM_001369, intron 38 of 78) intron (NM_001369, intron 38 of 78) 115338 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 313-475 chr6 103960894 103961139 + 2 NA Intergenic Intergenic 898530 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 249-452 chr9 111872782 111872981 + 2 NA Intergenic MamTip1|DNA|hAT-Tip100 -23933 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 115-23 chr20 5756383 5756449 + 2 NA intron (NM_152504, intron 1 of 2) L1M4|LINE|L1 6015 NM_001303479 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 137-84 chr7 42988903 42989011 + 2 NA Intergenic Intergenic 56581 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 292-183 chr18 52953197 52953459 + 2 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -283773 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 150-105 chr8 82233994 82234118 + 2 NA Intergenic Intergenic -391770 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 160-41 chr2 117520406 117520536 + 2 NA Intergenic LTR41C|LTR|ERVL -294220 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 336-60 chr10 23657831 23658152 + 2 NA Intergenic Intergenic -36736 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 567-120 chr3 117997194 117997604 + 2 NA Intergenic CpG -306474 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 313-328 chr3 22004427 22004613 + 2 NA Intergenic L1M2|LINE|L1 47381 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 129-5 chr10 67788073 67788188 + 2 NA Intergenic MIRc|SINE|MIR 50049 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 542-62 chr14 100255883 100256221 + 2 NA intron (NM_003403, intron 1 of 4) AluJo|SINE|Alu 16908 NM_003403 7528 Hs.388927 NM_003403 ENSG00000100811 YY1 DELTA|GADEVS|INO80S|NF-E1|UCRBP|YIN-YANG-1 YY1 transcription factor protein-coding 407-209 chr3 159662536 159662785 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 105952 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 157-45 chr16 9515294 9515393 + 2 NA Intergenic Intergenic -59838 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 334-335 chr3 26250001 26250220 + 2 NA Intergenic Intergenic -372696 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 374-119 chr15 98389503 98389851 + 2 NA intron (NR_146567, intron 1 of 2) L1MC4a|LINE|L1 31321 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 696-96 chr7 33876404 33876893 + 2 NA Intergenic Intergenic -28267 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 312-195 chr18 1273556 1273739 + 2 NA intron (NR_023926, intron 3 of 5) L1MC4|LINE|L1 85982 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 152-8 chr10 13441348 13441481 + 2 NA 3' UTR (NM_001100912, exon 8 of 8) 3' UTR (NM_001100912, exon 8 of 8) 61562 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 362-21 chr1 97317481 97317669 + 2 NA intron (NR_046590, intron 4 of 4) intron (NR_046590, intron 4 of 4) 221652 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 484-38 chr11 38864500 38864877 + 2 NA Intergenic L1PB1|LINE|L1 215830 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 268-85 chr12 43367487 43367648 + 2 NA intron (NM_025003, intron 37 of 38) L1M4b|LINE|L1 184636 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 280-9 chr1 72744892 72745116 + 2 NA Intergenic Intergenic -462465 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 129-59 chr4 44529053 44529141 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy -80288 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 389-227 chr3 67082866 67083194 + 2 NA Intergenic Intergenic 84723 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 306-506 chr8 86233755 86234028 + 2 NA Intergenic MLT2F|LTR|ERVL -3510 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 127-67 chr5 51035408 51035526 + 2 NA Intergenic Intergenic -65280 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 315-522 chrX 46049311 46049515 + 2 NA Intergenic L1MC1|LINE|L1 -197923 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 496-152 chr2 190202058 190202485 + 2 NA 3' UTR (NM_032321, exon 2 of 2) 3' UTR (NM_032321, exon 2 of 2) 21408 NM_032321 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 335-486 chr7 8397555 8397854 + 2 NA Intergenic Intergenic -35905 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 342-515 chr8 79211124 79211332 + 2 NA Intergenic Intergenic -120960 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 377-267 chr3 46653182 46653387 + 2 NA Intergenic L1MCa|LINE|L1 40395 NR_135622 259173 Hs.517937 NM_147129 ENSG00000178038 ALS2CL RN49018 ALS2 C-terminal like protein-coding 328-584 chr8 130656951 130657115 + 2 NA Intergenic Intergenic -213359 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 379-33 chr1 234846039 234846245 + 2 NA Intergenic L1MEd|LINE|L1 -86086 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 216-158 chr2 12372994 12373155 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) 173944 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 417-127 chr2 35615643 35615946 + 2 NA Intergenic L1MEg|LINE|L1 144389 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 379-203 chr21 36680853 36681099 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -18139 NM_005069 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 SIM bHLH transcription factor 2 protein-coding 248-205 chr2 163900922 163901151 + 2 NA Intergenic L1M2|LINE|L1 -165028 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 377-352 chr6 119233818 119234168 + 2 NA intron (NM_005907, intron 6 of 12) Charlie7|DNA|hAT-Charlie -84800 NM_001100411 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 174-55 chr18 11441598 11441722 + 2 NA Intergenic Intergenic -12818 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 128-56 chr5 144936185 144936288 + 2 NA Intergenic L1MA9|LINE|L1 730845 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 330-561 chrX 28379986 28380273 + 2 NA Intergenic L1ME1|LINE|L1 115534 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 336-178 chr15 68858090 68858368 + 2 NA Intergenic L1MDa|LINE|L1 -37334 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 478-157 chr2 207090161 207090616 + 2 NA intron (NR_073108, intron 3 of 4) intron (NR_073108, intron 3 of 4) 19685 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 227-290 chr5 82700923 82701080 + 2 NA Intergenic Intergenic -139154 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 328-578 chr8 123403823 123404132 + 2 NA Intergenic Intergenic -7530 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 336-318 chr20 19409869 19410188 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -125432 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 384-221 chr3 54738385 54738749 + 2 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -98710 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 304-58 chr10 84005885 84006073 + 2 NA Intergenic Intergenic -133530 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 531-242 chr8 104556891 104557254 + 2 NA intron (NM_013437, intron 1 of 6) L1PB1|LINE|L1 31952 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 537-76 chr16 8276005 8276475 + 2 NA Intergenic Intergenic 313598 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 213-133 chr2 35044017 35044191 + 2 NA Intergenic Intergenic 366547 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 191-109 chr2 143888877 143889028 + 2 NA Intergenic Intergenic -48115 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 258-25 chr1 195512980 195513229 + 2 NA Intergenic Intergenic 575611 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 561-10 chr1 159233324 159233876 + 2 NA Intergenic L1MA5|LINE|L1 28725 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 184-94 chr2 81590359 81590533 + 2 NA Intergenic Intergenic -123500 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 252-18 chr1 158917227 158917379 + 2 NA Intergenic L1M4|LINE|L1 -14249 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 294-229 chr2 122682339 122682533 + 2 NA Intergenic Intergenic 391045 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 159-59 chr3 140627105 140627233 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -50895 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 237-170 chr2 44116788 44116973 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -51923 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 651-121 chr8 114292887 114293469 + 2 NA Intergenic Intergenic -856239 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 241-161 chr18 76627236 76627410 + 2 NA intron (NR_110784, intron 4 of 4) L1M4|LINE|L1 7546 NR_120419 400660 Hs.131718 NR_120419 ENSG00000266256 LINC00683 - long intergenic non-protein coding RNA 683 ncRNA 534-36 chr10 105272748 105273101 + 2 NA Intergenic Intergenic 547409 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 330-330 chr21 30326392 30326585 + 2 NA Intergenic L1M1|LINE|L1 -6173 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 749-52 chr2 84642535 84643198 + 2 NA intron (NM_001370, intron 33 of 76) L1MCa|LINE|L1 126411 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 354-188 chr18 68556155 68556435 + 2 NA Intergenic Intergenic 158813 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 163-62 chr19 37632612 37632726 + 2 NA 3' UTR (NM_001320671, exon 6 of 6) 3' UTR (NM_001320671, exon 6 of 6) 22796 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 232-147 chr19 5792238 5792438 + 2 NA Intergenic Intergenic -1175 NM_020175 56931 Hs.284297 NM_020175 ENSG00000141994 DUS3L DUS3 dihydrouridine synthase 3 like protein-coding 703-28 chr14 80413306 80413754 + 2 NA intron (NR_038355, intron 8 of 8) intron (NR_038355, intron 8 of 8) -182473 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 352-189 chr17_KI270729v1_random 25868 26069 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 309-300 chr20 24309369 24309579 + 2 NA Intergenic Intergenic 109707 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 194-109 chr20 39999698 39999866 + 2 NA Intergenic L1M4|LINE|L1 -4679 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 282-200 chr2 44721103 44721251 + 2 NA intron (NM_024766, intron 7 of 10) L1MC|LINE|L1 217711 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 261-8 chr1 64042098 64042286 + 2 NA intron (NM_005012, intron 2 of 8) MER5B|DNA|hAT-Charlie 70013 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 304-512 chr8 78784591 78784795 + 2 NA intron (NM_001199886, intron 2 of 4) intron (NM_001199886, intron 2 of 4) 20770 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 432-49 chr11 91838822 91839180 + 2 NA Intergenic Intergenic -386033 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 276-75 chr11 12981292 12981468 + 2 NA intron (NR_038904, intron 1 of 1) AluJo|SINE|Alu 8168 NR_038904 100506305 Hs.153408 NR_038904 ENSG00000251381 LINC00958 BLACAT2 long intergenic non-protein coding RNA 958 ncRNA 247-4 chr1 45219465 45219644 + 2 NA Intergenic Intergenic -12949 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 282-503 chrX 109219060 109219252 + 2 NA Intergenic L2|LINE|L2 262930 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 298-445 chr7 133784081 133784297 + 2 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 40699 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 227-221 chr3 137591 137789 + 2 NA Intergenic L2a|LINE|L2 -58906 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 382-148 chr17 64327572 64327880 + 2 NA intron (NM_000442, intron 15 of 15) intron (NM_000442, intron 15 of 15) 63134 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 448-72 chr13 25035715 25036040 + 2 NA Intergenic Ricksha_0|DNA|MULE-MuDR -60261 NM_030979 5042 Hs.458280 NM_030979 ENSG00000151846 PABPC3 PABP3|PABPL3|tPABP poly(A) binding protein cytoplasmic 3 protein-coding 357-184 chr2 14869284 14869487 + 2 NA Intergenic LTR16E1|LTR|ERVL 236668 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 191-88 chr18 65360984 65361131 + 2 NA Intergenic Intergenic -389195 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 351-450 chr7 55648013 55648270 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 39891 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 335-153 chr14 40153343 40153636 + 2 NA Intergenic L1MA3|LINE|L1 -720989 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 372-464 chr7 81263017 81263328 + 2 NA Intergenic L1MC1|LINE|L1 298647 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 358-183 chr19 53027754 53027958 + 2 NA Intergenic L2|LINE|L2 13765 NM_152473 147664 Hs.44329 NM_152473 ENSG00000269526 ERVV-1 ENVV1|HERV-V1 endogenous retrovirus group V member 1, envelope protein-coding 376-97 chr13 93023112 93023342 + 2 NA Intergenic Intergenic -22114 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 384-267 chr4 80564391 80564650 + 2 NA intron (NM_152770, intron 2 of 5) L1M1|LINE|L1 228800 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 206-253 chr7 50040036 50040216 + 2 NA intron (NM_001159878, intron 4 of 7) L1PA10|LINE|L1 53120 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 340-567 chr9 29825287 29825534 + 2 NA Intergenic Intergenic 583044 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 434-78 chr14 46157323 46157651 + 2 NA intron (NR_102702, intron 1 of 3) L3|LINE|CR1 93328 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 411-113 chr16 83196289 83196632 + 2 NA intron (NM_001220490, intron 3 of 12) L1MD2|LINE|L1 -206162 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 313-267 chr2 103374278 103374460 + 2 NA Intergenic L1MB7|LINE|L1 -389940 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 322-225 chr19 27455678 27455928 + 2 NA Intergenic ALR/Alpha|Satellite|centr -337628 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 472-225 chr4 46248231 46248526 + 2 NA 3' UTR (NM_001330690, exon 11 of 11) 3' UTR (NM_001330690, exon 11 of 11) -124324 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 221-182 chr3 34455566 34455757 + 2 NA Intergenic L1MA4A|LINE|L1 657031 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 556-115 chr2 205791037 205791504 + 2 NA intron (NM_201266, intron 15 of 16) intron (NM_201266, intron 15 of 16) 108769 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 338-585 chr9 34600373 34600560 + 2 NA Intergenic Intergenic -10326 NM_001207011 1271 Hs.129966 NM_001842 ENSG00000122756 CNTFR - ciliary neurotrophic factor receptor protein-coding 299-422 chr7 56527188 56527391 + 2 NA Intergenic Intergenic 10841 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 267-133 chr16 25663106 25663287 + 2 NA Intergenic HAL1ME|LINE|L1 -28763 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 438-191 chr4 38348831 38349114 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie -17942 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 267-10 chr1 77427278 77427519 + 2 NA intron (NM_012093, intron 8 of 13) L1MCa|LINE|L1 144311 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 465-309 chr8 139433920 139434296 + 2 NA Intergenic Intergenic 269015 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 334-188 chr16 13740909 13741117 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -179144 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 328-604 chr9 32667836 32668046 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -32272 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 449-44 chr11 79012206 79012471 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 389771 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 439-225 chr5 15693302 15693667 + 2 NA intron (NM_001278317, intron 2 of 3) LTR1A1|LTR|ERV1 -78482 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 448 chr1 40505504 40505854 + 2 NA Intergenic Intergenic -3040 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 238-156 chr2 5109956 5110168 + 2 NA Intergenic L1MB7|LINE|L1 -453840 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 418-276 chr8 33300607 33300953 + 2 NA Intergenic L1PBa|LINE|L1 172366 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 313-482 chr6 144516323 144516595 + 2 NA intron (NM_007124, intron 37 of 73) intron (NM_007124, intron 37 of 73) 110804 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 147-9 chr11 25457131 25457208 + 2 NA Intergenic Intergenic -731954 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 409-150 chr2 119650608 119650875 + 2 NA intron (NR_073132, intron 23 of 24) MIRb|SINE|MIR -28426 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 316-111 chr11 100380894 100381170 + 2 NA Intergenic Intergenic -306256 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 560-40 chr12 118763770 118764159 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -2285 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 661-8 chr10 85048784 85049397 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 149815 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 369-269 chr3 102620612 102620946 + 2 NA Intergenic AluJb|SINE|Alu 185764 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 330-528 chr8 116003471 116003703 + 2 NA intron (NR_046215, intron 7 of 13) L1MC1|LINE|L1 321472 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 457-121 chr2 118743832 118744222 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 104156 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 278-14 chr1 157352554 157352786 + 2 NA Intergenic Intergenic 199845 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 387-110 chr14 71990555 71990816 + 2 NA intron (NM_001370288, intron 2 of 16) L2|LINE|L2 57158 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 183-46 chr14 57216444 57216613 + 2 NA intron (NM_006544, intron 15 of 17) L1M3|LINE|L1 52377 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 533-85 chr18 852661 853112 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -40644 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 319-143 chr14 66168220 66168448 + 2 NA Intergenic L1MB8|LINE|L1 -318037 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 356-429 chr6 109555820 109556111 + 2 NA intron (NM_001145128, intron 24 of 40) L1PA8A|LINE|L1 -72728 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 337-474 chr6 2525695 2525920 + 2 NA Intergenic L1ME4b|LINE|L1 -108693 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 309-217 chr18 59003091 59003260 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -32504 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 368-193 chr17 65640490 65640737 + 2 NA intron (NM_001353129, intron 25 of 26) intron (NM_001353129, intron 25 of 26) -78965 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 330-110 chr12 13704081 13704375 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 276128 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 265-368 chr7 102144506 102144768 + 2 NA intron (NM_001913, intron 8 of 22) AluJb|SINE|Alu -140504 NM_020979 10603 Hs.489448 NM_020979 ENSG00000160999 SH2B2 APS SH2B adaptor protein 2 protein-coding 243-146 chr15 100493135 100493299 + 2 NA intron (NM_001290341, intron 5 of 13) L1M4|LINE|L1 51069 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 182-151 chr6 95307780 95307956 + 2 NA Intergenic Intergenic 269583 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 430-65 chr12 50711931 50712214 + 2 NA intron (NM_173602, intron 22 of 37) AluJr|SINE|Alu -52029 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 234-71 chr12 5413798 5413959 + 2 NA Intergenic L1ME3|LINE|L1 -18230 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 241-64 chr11 39773000 39773165 + 2 NA Intergenic Intergenic 520048 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 355-495 chr8 57398428 57398699 + 2 NA Intergenic Intergenic 54776 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 358-228 chr2 104564433 104564693 + 2 NA Intergenic L1MA2|LINE|L1 -54054 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 259-194 chr2 59155153 59155406 + 2 NA Intergenic (AATG)n|Simple_repeat|Simple_repeat -62429 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 456-132 chr18 5961271 5961678 + 2 NA intron (NM_001365769, intron 15 of 16) intron (NM_001365769, intron 15 of 16) -65520 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 339-120 chr12 14136470 14136684 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -156221 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 428-67 chr14 62315578 62315878 + 2 NA Intergenic Intergenic -175755 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 412-192 chr21 29907535 29907809 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 32324 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 481-208 chr3 137737747 137738118 + 2 NA Intergenic Intergenic -26383 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 692-112 chr9 120806175 120806852 + 2 NA Intergenic AluYj4|SINE|Alu 13017 NR_027442 100288842 Hs.706815 NR_027442 B3GNT10 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 10 (putative) pseudo 538-42 chr11 80334379 80334746 + 2 NA Intergenic MIR|SINE|MIR 428241 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 283-174 chr17 11542064 11542240 + 2 NA intron (NM_001173462, intron 3 of 4) L1M4a1|LINE|L1 -56318 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 262-355 chr5 164337061 164337236 + 2 NA Intergenic Intergenic 130254 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 249-356 chr6 64412305 64412546 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 605589 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 754-62 chr5 5556994 5557535 + 2 NA Intergenic L1MA3|LINE|L1 134587 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 324-299 chr2 221082693 221082858 + 2 NA Intergenic Intergenic 489529 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 300-489 chr9 70569369 70569661 + 2 NA intron (NM_001366143, intron 21 of 25) intron (NM_001366143, intron 21 of 25) -154858 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 260-299 chr3 192738175 192738328 + 2 NA Intergenic Intergenic -10710 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 434-303 chr8 136851139 136851394 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 320468 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 470-243 chr6 164061236 164061635 + 2 NA Intergenic L1ME3B|LINE|L1 -389951 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 173-52 chr16 79659129 79659262 + 2 NA Intergenic Intergenic -58458 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 343-189 chr16 78137550 78137849 + 2 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 38045 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 803-24 chr2 40258198 40258726 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 171842 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 377-126 chr14 75943354 75943633 + 2 NA intron (NM_015072, intron 31 of 31) L1MEd|LINE|L1 38502 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 387-185 chr2 130777869 130778222 + 2 NA Intergenic L1MB4|LINE|L1 21701 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 249-31 chr1 218103271 218103460 + 2 NA Intergenic Intergenic 59860 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 443-114 chr16 50982345 50982624 + 2 NA intron (NR_039672, intron 2 of 6) LTR16C|LTR|ERVL -35274 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 428-279 chr7 119099565 119099935 + 2 NA Intergenic Intergenic 807625 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 157-142 chr9 120188455 120188605 + 2 NA Intergenic L2c|LINE|L2 56520 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 614-52 chr2 62353429 62353862 + 2 NA Intergenic Intergenic 138124 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 178-26 chr11 5320243 5320405 + 2 NA Intergenic Intergenic 4028 NM_033180 79345 Hs.680163 NM_033180 ENSG00000279012 OR51B2 HOR5'Beta3|OR51B1P olfactory receptor family 51 subfamily B member 2 (gene/pseudogene) protein-coding 244-185 chr2 206151645 206151838 + 2 NA intron (NM_001199983, intron 2 of 17).2 intron (NM_001199983, intron 2 of 17).2 7453 NM_001199984 4719 Hs.471207 NM_005006 ENSG00000023228 NDUFS1 CI-75Kd|CI-75k|MC1DN5|PRO1304 NADH:ubiquinone oxidoreductase core subunit S1 protein-coding 342-60 chr10 43750060 43750352 + 2 NA Intergenic Intergenic 28619 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 171-136 chr8 70312345 70312461 + 2 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 90987 NM_001321707 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 233-245 chr3 167065192 167065358 + 2 NA Intergenic Intergenic 166592 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 205-258 chr7 43369716 43369861 + 2 NA intron (NM_001287059, intron 5 of 27) intron (NM_001287059, intron 5 of 27) 152754 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 411-127 chr18 12835712 12835980 + 2 NA intron (NM_080423, intron 3 of 8) L1ME3Cz|LINE|L1 5116 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 728-99 chr8 87898367 87898865 + 2 NA Intergenic Intergenic -24601 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 231-336 chr7 71475103 71475274 + 2 NA intron (NM_022479, intron 5 of 10) MER1A|DNA|hAT-Charlie -167418 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 214-231 chr4 37056716 37056895 + 2 NA Intergenic L1MC4|LINE|L1 55026 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 329-566 chr8 50735220 50735391 + 2 NA intron (NM_001287814, intron 16 of 16) L1MB4|LINE|L1 571174 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 223-146 chr2 29835771 29835978 + 2 NA intron (NM_004304, intron 1 of 28) THE1B|LTR|ERVL-MaLR 85712 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 331-195 chr16 72420886 72421064 + 2 NA intron (NR_126330, intron 7 of 13) AluSg|SINE|Alu 243995 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 455-267 chr8 36346798 36347145 + 2 NA Intergenic L1MB5|LINE|L1 -437403 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 130-47 chr20 61204155 61204278 + 2 NA Intergenic Intergenic -48045 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 229-95 chr12 99061671 99061845 + 2 NA intron (NM_152788, intron 16 of 25) LTR86B1|LTR|ERVL -31601 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 626-142 chr8 111193957 111194423 + 2 NA intron (NR_125418, intron 1 of 3) HAL1|LINE|L1 42013 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 546-250 chr8 133963796 133964231 + 2 NA Intergenic L2a|LINE|L2 77517 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 510-165 chr2 239713304 239713682 + 2 NA Intergenic L1ME4a|LINE|L1 -49367 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 496-70 chr13 99766249 99766675 + 2 NA intron (NR_120421, intron 3 of 4) L1MA4|LINE|L1 -37461 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 327-7 chr1 59823378 59823655 + 2 NA intron (NM_015888, intron 2 of 21) intron (NM_015888, intron 2 of 21) 8567 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 553-175 chr4 58970459 58970810 + 2 NA Intergenic L1ME3|LINE|L1 -13648 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 197-193 chr7 42669790 42669953 + 2 NA intron (NR_110833, intron 2 of 2) L1ME3E|LINE|L1 36576 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 321-277 chr2 17067534 17067831 + 2 NA Intergenic L1ME4b|LINE|L1 -401848 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 281-12 chr1 118527372 118527650 + 2 NA Intergenic L2a|LINE|L2 -342283 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 590-154 chr7 50824581 50825095 + 2 NA Intergenic Intergenic -31385 NM_001371008 362-49 chr10 23659236 23659473 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -35373 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 335-521 chr8 9945460 9945702 + 2 NA Intergenic LTR16D|LTR|ERVL -42109 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 307-427 chr6 68859298 68859533 + 2 NA intron (NM_001704, intron 3 of 31) THE1B-int|LTR|ERVL-MaLR 224133 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 439-6 chr1 66161719 66161979 + 2 NA intron (NM_001037340, intron 1 of 14) MIRb|SINE|MIR -111131 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 368-141 chr14 51506694 51506990 + 2 NA intron (NM_001042481, intron 1 of 14) L1ME4a|LINE|L1 17714 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 336-375 chr3 109758519 109758820 + 2 NA Intergenic HAL1|LINE|L1 155841 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 412-226 chr4 14342134 14342501 + 2 NA Intergenic Intergenic 230349 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 224-5 chr1 18154195 18154364 + 2 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 46481 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 378-189 chr18 24696648 24696930 + 2 NA Intergenic Intergenic -28992 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 321-436 chr4 144571861 144572097 + 2 NA Intergenic MER4D|LTR|ERV1 74040 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 227-147 chr18 66052974 66053176 + 2 NA Intergenic Intergenic 302063 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 513-22 chr10 29844859 29845338 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -108162 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 246-365 chr7 33490131 33490335 + 2 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 360669 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 199-214 chr6 49517549 49517725 + 2 NA intron (NM_001010904, intron 4 of 5) (AT)n|Simple_repeat|Simple_repeat 17714 NM_001010904 389396 Hs.585172 NM_001010904 ENSG00000203972 GLYATL3 C6orf140|bA28H17.2 glycine-N-acyltransferase like 3 protein-coding 737-76 chr6 123829094 123829789 + 2 NA intron (NM_001040214, intron 1 of 6) MLT1J1|LTR|ERVL-MaLR 25576 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 549-152 chr4 75306477 75306897 + 2 NA Intergenic Intergenic -47389 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 302-184 chr18 60918389 60918568 + 2 NA Intergenic Intergenic -414952 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 282-315 chr3 181284946 181285120 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 53296 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 347-5 chr1 41456919 41457123 + 2 NA Intergenic Intergenic 27662 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 553-177 chr4 86205145 86205518 + 2 NA intron (NM_001363657, intron 2 of 13) L1M5|LINE|L1 85525 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 195-32 chr10 105219105 105219288 + 2 NA intron (NM_014978, intron 19 of 26) MER68|LTR|ERVL -552980 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 495-240 chr7 80923987 80924447 + 2 NA Intergenic MIRb|SINE|MIR -1828 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 313-384 chr4 62608966 62609167 + 2 NA Intergenic L1M4b|LINE|L1 -447301 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 223-376 chrX 55306328 55306534 + 2 NA Intergenic L1PA15-16|LINE|L1 26343 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 230-366 chr8 47233811 47233992 + 2 NA Intergenic AluJb|SINE|Alu -26977 NM_001352934 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 244-293 chr5 33386983 33387149 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -53630 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 311-335 chr3 31954513 31954763 + 2 NA intron (NM_001174060, intron 1 of 10) L1ME2z|LINE|L1 -27112 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 426-253 chr6 35900972 35901246 + 2 NA intron (NR_034069, intron 2 of 15) intron (NR_034069, intron 2 of 15) 19989 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 223-115 chr16 86171903 86172059 + 2 NA Intergenic (TATTACA)n|Simple_repeat|Simple_repeat -24200 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 187-128 chr4 56776889 56777003 + 2 NA Intergenic Intergenic 44527 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 309-15 chr1 117793469 117793705 + 2 NA Intergenic Intergenic 136034 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 324-439 chr5 152222193 152222396 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 182985 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 540-127 chr20 7343846 7344255 + 2 NA Intergenic Intergenic -3383 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 572-69 chr17 47387783 47388289 + 2 NA intron (NM_001195192, intron 12 of 21) L1M3f|LINE|L1 64081 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 199-213 chr6 44929222 44929377 + 2 NA intron (NM_001350324, intron 10 of 11) intron (NM_001350324, intron 10 of 11) 268471 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 202-28 chr10 43744732 43744902 + 2 NA Intergenic L1MEc|LINE|L1 34008 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 208-205 chr5 28218895 28219070 + 2 NA Intergenic L1MC5a|LINE|L1 68683 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 544-186 chr5 124019878 124020300 + 2 NA Intergenic L1MEg|LINE|L1 418431 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 444-248 chr7 141082592 141082914 + 2 NA intron (NM_001195278, intron 1 of 3) L2b|LINE|L2 8689 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 497-70 chr13 87072877 87073243 + 2 NA Intergenic Intergenic 161140 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 211-265 chr6 159193725 159193861 + 2 NA intron (NM_032532, intron 1 of 22) intron (NM_032532, intron 1 of 22) -23786 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 281-353 chr5 33014200 33014368 + 2 NA Intergenic L1M3c|LINE|L1 66841 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 325-228 chr17 69769638 69769875 + 2 NA intron (NR_109972, intron 3 of 4) L1PA16|LINE|L1 175769 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 432-16 chr1 194687527 194687780 + 2 NA Intergenic L1PB|LINE|L1 1382908 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 286-469 chr8 134030051 134030216 + 2 NA Intergenic L2|LINE|L2 143637 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 647-34 chr16 12735444 12735899 + 2 NA intron (NM_018340, intron 2 of 3) MIR|SINE|MIR 15350 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 218-43 chr11 15679899 15680069 + 2 NA intron (NM_001293172, intron 1 of 2) L1ME1|LINE|L1 36099 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 368-76 chr11 37474337 37474547 + 2 NA Intergenic Intergenic -464159 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 269-72 chr11 99637549 99637707 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 81483 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 225-203 chr3 48359908 48360064 + 2 NA Intergenic L1MA8|LINE|L1 -12233 NM_207102 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 262-170 chr17 61736213 61736423 + 2 NA intron (NM_032043, intron 16 of 19) AluJr|SINE|Alu 127241 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 302-403 chr7 21539163 21539352 + 2 NA Intergenic L1MC5a|LINE|L1 -3782 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 625-38 chr17 61626198 61626694 + 2 NA Intergenic L1MDa|LINE|L1 -35227 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 372-296 chr21 37067037 37067362 + 2 NA intron (NM_153682, intron 4 of 4) intron (NM_153682, intron 4 of 4) -3133 NR_131189 105372795 Hs.528019 NR_131189 LOC105372795 - uncharacterized LOC105372795 ncRNA 169-128 chr7 152403779 152403941 + 2 NA intron (NM_170606, intron 1 of 58) L1PA16|LINE|L1 32143 NM_170606 58508 Hs.647120 NM_021230 ENSG00000055609 KMT2C HALR|KLEFS2|MLL3 lysine methyltransferase 2C protein-coding 505-290 chr7 90841755 90842177 + 2 NA intron (NM_012395, intron 4 of 13) MIRb|SINE|MIR 132150 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 696-57 chr2 43693829 43694478 + 2 NA intron (NM_172069, intron 4 of 29) intron (NM_172069, intron 4 of 29) -17724 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 355-515 chr8 134681478 134681804 + 2 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) 14914 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 321-250 chr18 53965896 53966096 + 2 NA Intergenic Intergenic 256416 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 338-283 chr2 174736029 174736244 + 2 NA Intergenic Intergenic 16336 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 303-28 chr1 240530918 240531128 + 2 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 81132 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 276-360 chr5 9850595 9850772 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -3694 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 813-53 chrX 64137802 64138399 + 2 NA Intergenic Intergenic 67608 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 344-363 chr4 112784530 112784766 + 2 NA intron (NM_001354269, intron 1 of 43) AluJb|SINE|Alu -33349 NM_001354275 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 358-141 chr16 24371428 24371666 + 2 NA Intergenic AluY|SINE|Alu 115994 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 457-152 chr22 48218470 48218804 + 2 NA Intergenic L1M6|LINE|L1 -55727 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 367-309 chr4 182707 183030 + 2 NA intron (NR_110527, intron 3 of 4) L1PA11|LINE|L1 -29732 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 330-90 chr11 45699899 45700066 + 2 NA Intergenic Intergenic -8206 NR_106976 102465691 NR_106976 ENSG00000276639 MIR7154 hsa-mir-7154 microRNA 7154 ncRNA 330-72 chr10 111227219 111227516 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 113076 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 326-577 chr9 107794002 107794238 + 2 NA Intergenic Intergenic -304351 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 308-310 chr3 189895463 189895624 + 2 NA 3' UTR (NM_001114980, exon 12 of 12) 3' UTR (NM_001114980, exon 12 of 12) 65621 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 516-3 chr1 58604041 58604373 + 2 NA Intergenic L1PB2|LINE|L1 -26955 NM_002353 4070 Hs.23582 NM_002353 ENSG00000184292 TACSTD2 EGP-1|EGP1|GA733-1|GA7331|GP50|M1S1|TROP2 tumor associated calcium signal transducer 2 protein-coding 220-33 chr1 232024952 232025131 + 2 NA intron (NM_001164537, intron 12 of 13) intron (NM_001164537, intron 12 of 13) 99207 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 348-280 chr22 47506523 47506825 + 2 NA Intergenic MLT2B3|LTR|ERVL -19563 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 304-75 chr11 37522727 37523001 + 2 NA Intergenic L1MA2|LINE|L1 -415737 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 452-136 chr2 132741845 132742217 + 2 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -70505 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 366-198 chr2 64127422 64127669 + 2 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 16875 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 235-294 chr5 111913987 111914141 + 2 NA intron (NR_046678, intron 1 of 3) intron (NR_046678, intron 1 of 3) 1556 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 348-335 chr3 188550608 188550874 + 2 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) 17925 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 795-14 chr10 89874370 89874989 + 2 NA intron (NR_149080, intron 1 of 1) ERVL-B4-int|LTR|ERVL -13455 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 542-209 chr7 113919892 113920373 + 2 NA Intergenic Intergenic -1123 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 531-237 chr8 51007712 51008060 + 2 NA Intergenic L1MC2|LINE|L1 801559 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 317-268 chr2 227694048 227694351 + 2 NA intron (NM_001371411, intron 4 of 5) AluSx1|SINE|Alu 12457 NM_001371412 309-35 chr1 246158704 246158922 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 258599 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 510-290 chr9 17123153 17123581 + 2 NA Intergenic Intergenic -11673 NM_017738 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 590-177 chr9 7348528 7348872 + 2 NA Intergenic HAL1|LINE|L1 451078 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 260-357 chr5 126447102 126447320 + 2 NA intron (NR_146196, intron 1 of 14) intron (NR_146196, intron 1 of 14) -17939 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 308-9 chr1 59532319 59532614 + 2 NA intron (NM_001278224, intron 1 of 9) L1ME3|LINE|L1 16836 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 136-16 chr11 98798357 98798477 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -222532 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 304-187 chr16 80671149 80671327 + 2 NA intron (NM_152342, intron 2 of 6) intron (NM_152342, intron 2 of 6) -98430 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 391-103 chr14 60614438 60614733 + 2 NA Intergenic L1MC5|LINE|L1 -24631 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 230-346 chr7 43388970 43389189 + 2 NA intron (NM_001287059, intron 5 of 27) intron (NM_001287059, intron 5 of 27) 133463 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 226-156 chr2 24174362 24174548 + 2 NA promoter-TSS (NM_001040710) promoter-TSS (NM_001040710) -598 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 337-16 chr1 101369135 101369306 + 2 NA intron (NR_126402, intron 4 of 4) AluSz6|SINE|Alu 45383 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 804-56 chr5 143936495 143937110 + 2 NA Intergenic L1MA2|LINE|L1 124641 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 441-54 chr12 55615536 55615843 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -21203 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 332-55 chr10 39162159 39162460 + 2 NA Intergenic ALR/Alpha|Satellite|centr 465713 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 527-194 chr4 96404251 96404659 + 2 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 93752 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 592-182 chr9 22356527 22356934 + 2 NA Intergenic Intergenic -90094 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 678-64 chr3 18014339 18014805 + 2 NA intron (NR_161333, intron 2 of 4) intron (NR_161333, intron 2 of 4) 52020 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 381-390 chr8 117637697 117638044 + 2 NA Intergenic L1PA4|LINE|L1 117157 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 240-430 chr8 134787855 134788090 + 2 NA Intergenic L1MEg|LINE|L1 12635 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 334-194 chr16 54902774 54903104 + 2 NA Intergenic L1MC1|LINE|L1 25839 NR_110454 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 188-6 chr1 95782305 95782463 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger -209684 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 575-34 chr11 112094277 112094669 + 2 NA intron (NM_001276506, intron 4 of 4) AluJr|SINE|Alu 7600 NM_001276504 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 436-329 chr9 87367323 87367734 + 2 NA Intergenic L1ME1|LINE|L1 -129700 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 428-88 chr17 3688576 3689002 + 2 NA intron (NM_175080, intron 6 of 10) intron (NM_175080, intron 6 of 10) 7366 NM_001204519 5026 Hs.731607 NM_002561 ENSG00000083454 P2RX5 LRH-1|P2X5|P2X5R purinergic receptor P2X 5 protein-coding 296-244 chr2 156221607 156221852 + 2 NA intron (NR_110250, intron 1 of 3) L1PA11|LINE|L1 33202 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 372-212 chr2 8920189 8920540 + 2 NA intron (NR_135605, intron 1 of 11) L1MB7|LINE|L1 -82751 NM_001348738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 727-11 chr10 90060499 90060875 + 2 NA Intergenic Intergenic -103314 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 278-9 chr1 95524244 95524415 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 14213 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 420-101 chr17 54665075 54665429 + 2 NA Intergenic Intergenic -235439 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 370-329 chr4 31949027 31949284 + 2 NA Intergenic Intergenic -48224 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 248-323 chr5 108759092 108759259 + 2 NA intron (NR_146155, intron 1 of 19) intron (NR_146155, intron 1 of 19) 10227 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 233-225 chr3 8254343 8254527 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) -238128 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 188-218 chr9 77570161 77570344 + 2 NA intron (NM_004297, intron 1 of 6) L1MB8|LINE|L1 78070 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 315-8 chr1 55710720 55710998 + 2 NA Intergenic Intergenic 234104 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 254-294 chr5 11685348 11685479 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -96347 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 523-245 chr6 95749995 95750428 + 2 NA Intergenic L1MA5|LINE|L1 172676 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 288-346 chr5 146476163 146476389 + 2 NA intron (NM_006706, intron 9 of 21) L1MC5|LINE|L1 28943 NM_006706 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 576-69 chr18 3392456 3392797 + 2 NA Intergenic Intergenic -19301 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 311-224 chr19 9302647 9302857 + 2 NA intron (NM_198535, intron 2 of 5) AluJr|SINE|Alu 7086 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 199-249 chr8 136095062 136095229 + 2 NA Intergenic Intergenic -435653 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 200-11 chr1 160866156 160866305 + 2 NA Intergenic MER77|LTR|ERVL -3343 NM_001166663 51744 Hs.157872 NM_016382 ENSG00000122223 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule protein-coding 576-146 chr6 40250564 40250980 + 2 NA Intergenic Intergenic 105234 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 308-546 chrX 63605295 63605540 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -44322 NR_152609 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 399-313 chr8 125763030 125763349 + 2 NA Intergenic L1MA4|LINE|L1 188008 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 498-186 chr4 35716036 35716421 + 2 NA Intergenic L1MA4A|LINE|L1 527711 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 365-266 chr3 134507418 134507707 + 2 NA intron (NR_148353, intron 3 of 12) intron (NR_148353, intron 3 of 12) 21389 NM_001353111 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 346-231 chr2 25101702 25102008 + 2 NA intron (NM_014971, intron 3 of 22) intron (NM_014971, intron 3 of 22) 59392 NM_001319099 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 445-2 chr1 49467896 49468319 + 2 NA intron (NR_046839, intron 2 of 3) MER8|DNA|TcMar-Tigger 3978 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 255-97 chr13 94637241 94637428 + 2 NA Intergenic L1ME1|LINE|L1 35477 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 246-230 chr20 38272659 38272899 + 2 NA intron (NR_104170, intron 1 of 1) MLT1F1|LTR|ERVL-MaLR -12044 NM_001029864 85449 Hs.472690 NM_001029864 ENSG00000149633 KIAA1755 - KIAA1755 protein-coding 290-309 chr4 47104589 47104743 + 2 NA intron (NM_000812, intron 3 of 8) L1MCa|LINE|L1 73099 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 355-286 chr20 54865941 54866173 + 2 NA Intergenic AluSx|SINE|Alu 390464 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 726-33 chr18 22540237 22540615 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -122511 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 227-24 chr1 225175464 225175627 + 2 NA intron (NM_001367479, intron 36 of 85) L1M2|LINE|L1 245870 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 376-119 chr15 62239345 62239636 + 2 NA Intergenic Intergenic 9305 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 456-156 chr2 71423442 71423834 + 2 NA exon (NM_014497, exon 22 of 28) exon (NM_014497, exon 22 of 28) -29923 NM_001130979 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 235-338 chr7 90902721 90902857 + 2 NA intron (NM_012395, intron 6 of 13) L1MA4A|LINE|L1 192973 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 366-99 chr12 41730527 41730779 + 2 NA Intergenic L1ME3|LINE|L1 -33536 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 544-152 chr3 130256798 130257241 + 2 NA intron (NR_027898, intron 19 of 22) intron (NR_027898, intron 19 of 22) 44199 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 571-159 chr7 136788157 136788678 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -80235 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 234-229 chr3 18431879 18432047 + 2 NA intron (NM_001322874, intron 1 of 10) intron (NM_001322874, intron 1 of 10) -6624 NM_002971 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 397-134 chr19 36826634 36826858 + 2 NA intron (NM_001242800, intron 1 of 4) L2c|LINE|L2 11281 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 429-44 chr10 115814993 115815306 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 379640 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 394-294 chr6 142348824 142349115 + 2 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 46962 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 257-71 chr11 99995390 99995549 + 2 NA intron (NM_001243270, intron 7 of 23) (AATA)n|Simple_repeat|Simple_repeat 439324 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 246-316 chr5 23342234 23342425 + 2 NA Intergenic Intergenic -165280 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 300-143 chr16 64771796 64771968 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 350181 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 341-41 chr1 213522337 213522539 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -402311 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 226-5 chr1 45069469 45069617 + 2 NA intron (NM_020883, intron 2 of 13) HAL1|LINE|L1 57289 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 473-216 chr5 45607426 45607836 + 2 NA intron (NM_021072, intron 2 of 7) (ATATATCTAG)n|Simple_repeat|Simple_repeat 88749 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 488-41 chr10 129355085 129355399 + 2 NA Intergenic L1ME3D|LINE|L1 -111999 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 154-73 chr3 117904194 117904286 + 2 NA Intergenic L1ME4c|LINE|L1 -213315 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 239-287 chr4 116065774 116065932 + 2 NA Intergenic Intergenic -233872 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 427-156 chr3 57671781 57672066 + 2 NA intron (NM_152678, intron 3 of 19) intron (NM_152678, intron 3 of 19) 21154 NM_152678 201627 Hs.91085 NM_152678 ENSG00000174839 DENND6A AFI1A|FAM116A DENN domain containing 6A protein-coding 335-58 chr10 62611796 62612007 + 2 NA intron (NM_199452, intron 1 of 6) L2c|LINE|L2 91453 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 293-75 chr12 1117916 1118111 + 2 NA intron (NR_027948, intron 6 of 19) L1MA1|LINE|L1 90265 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 345-246 chr2 34876508 34876797 + 2 NA Intergenic Intergenic 199095 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 245-248 chr4 30976940 30977130 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -194109 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 289-162 chr15 100163611 100163869 + 2 NA intron (NM_139057, intron 8 of 21) MamRep137|DNA|TcMar-Tigger 178235 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 314-497 chr6 40006467 40006693 + 2 NA Intergenic L1ME3F|LINE|L1 -72118 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 286-8 chr1 42584589 42584851 + 2 NA intron (NM_001080850, intron 9 of 16) L2|LINE|L2 51700 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 265-419 chr9 133964198 133964367 + 2 NA intron (NM_001134398, intron 1 of 29) AluJb|SINE|Alu 28042 NM_003371 7410 Hs.369921 NM_003371 ENSG00000160293 VAV2 VAV-2 vav guanine nucleotide exchange factor 2 protein-coding 343-489 chr6 164577811 164578133 + 2 NA Intergenic AluSz|SINE|Alu 244091 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 739-20 chr14 67973284 67973746 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 149923 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 381-382 chr8 87238219 87238463 + 2 NA intron (NM_173538, intron 6 of 10) ERV3-16A3_I-int|LTR|ERVL 371926 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 646-22 chr11 10632646 10633110 + 2 NA intron (NM_001100167, intron 3 of 20) LTR37B|LTR|ERV1 19423 NM_001098579 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 257-61 chr11 40458782 40458962 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -165742 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 549-226 chrX 46012944 46013323 + 2 NA Intergenic Intergenic -161643 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 239-378 chr7 62982270 62982425 + 2 NA Intergenic ALR/Alpha|Satellite|centr 321709 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 156-89 chr6 52639740 52639889 + 2 NA Intergenic Intergenic -24587 NR_024405 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 203-228 chr8 66969986 66970158 + 2 NA intron (NM_001364912, intron 6 of 6) L2c|LINE|L2 -7481 NM_001193502 100129654 Hs.120040 NM_001193502 ENSG00000261787 TCF24 TCF-24|bHLHa25 transcription factor 24 protein-coding 407-261 chr5 140611269 140611573 + 2 NA Intergenic LTR19B|LTR|ERV1 21754 NM_000591 929 Hs.163867 NM_000591 ENSG00000170458 CD14 - CD14 molecule protein-coding 511-52 chr12 97663532 97663995 + 2 NA Intergenic LTR101_Mam|LTR|ERVL 89835 NR_077241 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 230-131 chr15 94478699 94478879 + 2 NA intron (NM_018349, intron 21 of 21) intron (NM_018349, intron 21 of 21) 122859 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 320-150 chr14 54216285 54216532 + 2 NA Intergenic Intergenic -180460 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 165-9 chr10 70250614 70250731 + 2 NA 3' UTR (NM_022146, exon 4 of 4) 3' UTR (NM_022146, exon 4 of 4) -17243 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 389-112 chr15 57146459 57146793 + 2 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -72804 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 566-59 chr16 6275604 6276129 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 256163 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 122-7 chr11 77251134 77251204 + 2 NA intron (NM_182833, intron 11 of 16) L1M2a|LINE|L1 50497 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 465-208 chr4 104250212 104250613 + 2 NA Intergenic L1M1|LINE|L1 -240553 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 295-367 chr5 5452630 5452811 + 2 NA intron (NM_015325, intron 10 of 18) L1M5|LINE|L1 30043 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 451-131 chr20 40760446 40760825 + 2 NA Intergenic Intergenic -46012 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 156-110 chr9 2275081 2275173 + 2 NA Intergenic Intergenic 116671 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 301-201 chr2 56304034 56304282 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -118388 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 488-243 chr6 129857712 129858038 + 2 NA intron (NM_001010876, intron 1 of 4) intron (NM_001010876, intron 1 of 4) 3440 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 502-142 chr2 100646994 100647404 + 2 NA Intergenic Intergenic 43460 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 246-271 chr3 116569333 116569520 + 2 NA TTS (NR_046624) TTS (NR_046624) 16953 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 318-565 chr9 1080301 1080600 + 2 NA Intergenic Intergenic 28963 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 387-267 chr5 8289944 8290302 + 2 NA Intergenic Intergenic 167441 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 716-16 chr12 34484539 34485056 + 2 NA Intergenic ALR/Alpha|Satellite|centr 462301 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 338-503 chr7 50073960 50074173 + 2 NA intron (NM_007009, intron 3 of 7) L1MA1|LINE|L1 19180 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 303-361 chr5 67711606 67711801 + 2 NA Intergenic L1MC3|LINE|L1 -64914 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 323-204 chr18 62382496 62382683 + 2 NA intron (NM_003839, intron 9 of 9) L1M3f|LINE|L1 57279 NM_001278268 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 450-157 chr2 171640864 171641133 + 2 NA Intergenic L1MA3|LINE|L1 -46471 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 638-95 chr3 165854737 165855192 + 2 NA Intergenic Intergenic -17541 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 213-66 chr12 23998296 23998461 + 2 NA intron (NM_152989, intron 4 of 17) L1M4a2|LINE|L1 -47346 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 190-2 chr1 60691158 60691316 + 2 NA intron (NR_110628, intron 4 of 5) MER5B|DNA|hAT-Charlie -68552 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 310-350 chr3 167504174 167504436 + 2 NA intron (NM_001348951, intron 17 of 18) MSTA-int|LTR|ERVL-MaLR -30173 NM_001012303 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 414-116 chr17 34611542 34611905 + 2 NA intron (NM_001304438, intron 1 of 8) MIRb|SINE|MIR 30974 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 355-124 chr12 22336007 22336239 + 2 NA Intergenic Intergenic -1409 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 390-409 chr9 25391361 25391748 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 287304 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 387-66 chr11 97475898 97476250 + 2 NA Intergenic L1M5|LINE|L1 967649 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 225-318 chr7 7048225 7048424 + 2 NA Intergenic Intergenic 18721 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 297-170 chr17 13534947 13535149 + 2 NA intron (NM_006042, intron 1 of 1) (AAAT)n|Simple_repeat|Simple_repeat 8598 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 278-270 chr3 46760556 46760808 + 2 NA Intergenic L1MEc|LINE|L1 -3827 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 253-164 chr18 26989290 26989502 + 2 NA intron (NM_031422, intron 4 of 5) L1ME1|LINE|L1 -123593 NM_001317387 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 625-67 chr3 3936442 3936839 + 2 NA Intergenic L1PA6|LINE|L1 -135765 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 252-385 chr6 165789393 165789538 + 2 NA Intergenic Intergenic -127185 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 245-271 chr5 9657687 9657844 + 2 NA intron (NR_027112, intron 11 of 12) L1MB2|LINE|L1 -27414 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 467-286 chr8 121944974 121945278 + 2 NA Intergenic Intergenic -303686 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 494-73 chr14 80409990 80410334 + 2 NA intron (NR_038355, intron 8 of 8) MER5A|DNA|hAT-Charlie -179105 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 476-271 chr8 115107862 115108179 + 2 NA Intergenic AluSp|SINE|Alu 559993 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 522-251 chr8 91814537 91814880 + 2 NA Intergenic Intergenic 202972 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 775-20 chr11 89514814 89515364 + 2 NA intron (NM_001143837, intron 2 of 20) L1ME1|LINE|L1 -22870 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 308-409 chr6 7720033 7720260 + 2 NA Intergenic L1ME3A|LINE|L1 -5953 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 150-96 chr6 133726179 133726284 + 2 NA intron (NR_109982, intron 4 of 8) L1MEb|LINE|L1 -94916 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 239-14 chr1 184274299 184274472 + 2 NA Intergenic L1ME4b|LINE|L1 -112644 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 358-240 chr2 195443436 195443762 + 2 NA Intergenic AluJo|SINE|Alu -213359 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 264-236 chr20 15178031 15178241 + 2 NA intron (NM_001351663, intron 5 of 17) MLT1K|LTR|ERVL-MaLR -18704 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 206-37 chr10 88358660 88358831 + 2 NA intron (NM_018363, intron 5 of 6) intron (NM_018363, intron 5 of 6) 224573 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 273-207 chr2 30311595 30311839 + 2 NA Intergenic Intergenic -34929 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 420-301 chr8 142958130 142958502 + 2 NA Intergenic L1MD|LINE|L1 -37512 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 383-193 chr2 89813898 89814093 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -176088 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 221-254 chr5 155439172 155439336 + 2 NA Intergenic Intergenic 425499 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 328-621 chrUn_KI270442v1 169878 170193 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 320-572 chr8 125169311 125169579 + 2 NA intron (NR_146191, intron 5 of 8) L2c|LINE|L2 77585 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 203-144 chr3 36342710 36342892 + 2 NA Intergenic MER83A-int|LTR|ERV1 -37686 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 244-80 chr13 92289070 92289227 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 63059 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 291-440 chr8 62568685 62568902 + 2 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 319939 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 193-189 chr7 72308818 72308958 + 2 NA intron (NM_001363460, intron 1 of 5) intron (NM_001363460, intron 1 of 5) 28503 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 351-392 chr5 113800619 113800880 + 2 NA Intergenic Intergenic 287055 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 445-133 chr2 116583864 116584240 + 2 NA Intergenic Intergenic -1230639 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 288-430 chr8 25960112 25960383 + 2 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 85166 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 461-239 chr6 153318821 153319192 + 2 NA Intergenic L1ME1|LINE|L1 -187724 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 462-41 chr11 21420663 21421041 + 2 NA intron (NM_201551, intron 15 of 18) HAL1|LINE|L1 751266 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 381-231 chr21 21717320 21717597 + 2 NA Intergenic (ACTATAT)n|Simple_repeat|Simple_repeat 19861 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 344-65 chr10 122397525 122397766 + 2 NA intron (NM_001330178, intron 3 of 13) intron (NM_001330178, intron 3 of 13) 5342 NM_021622 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 394-284 chr6 54560586 54560973 + 2 NA Intergenic Intergenic 252338 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 359-175 chr16 77435631 77435946 + 2 NA promoter-TSS (NM_001326358) promoter-TSS (NM_001326358) -754 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 478-213 chr4 76278184 76278584 + 2 NA intron (NM_001242939, intron 6 of 6) intron (NM_001242939, intron 6 of 6) 26663 NM_001136570 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 630-134 chr7 94877055 94877443 + 2 NA Intergenic MER31-int|LTR|ERV1 -30345 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 291-433 chr8 50629485 50629677 + 2 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 465450 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 363-87 chr11 93042405 93042733 + 2 NA Intergenic L1ME3B|LINE|L1 72946 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 277-93 chr12 112822963 112823197 + 2 NA intron (NM_001347955, intron 2 of 20) intron (NM_001347955, intron 2 of 20) 31332 NM_001347955 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 380-129 chr15 24824592 24824817 + 2 NA intron (NM_022808, intron 1 of 11) intron (NM_022808, intron 1 of 11) 1096 NM_022807 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 169-55 chr2 13264981 13265105 + 2 NA Intergenic L2a|LINE|L2 -258030 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 400-295 chr5 166703765 166704124 + 2 NA Intergenic Intergenic 222426 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 302-368 chr6 17396822 17397004 + 2 NA intron (NM_006366, intron 1 of 12) intron (NM_006366, intron 1 of 12) 3318 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 150-65 chr3 5115753 5115888 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -6472 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 312-421 chr5 92021573 92021774 + 2 NA Intergenic Intergenic -638356 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 723-63 chr6 46478823 46479281 + 2 NA intron (NM_001251973, intron 1 of 4) intron (NM_001251973, intron 1 of 4) 12271 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 478-175 chr3 4671129 4671507 + 2 NA intron (NM_001168272, intron 19 of 60) intron (NM_001168272, intron 19 of 60) 80272 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 226-357 chr8 120818949 120819148 + 2 NA Intergenic Intergenic -7002 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 341-182 chr16 23033438 23033746 + 2 NA Intergenic L1PA16|LINE|L1 115678 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 331-526 chr8 72343195 72343460 + 2 NA Intergenic L1M5|LINE|L1 -91693 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 338-381 chr4 54521928 54522154 + 2 NA Intergenic L1MC5|LINE|L1 85090 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 249-276 chr3 160821346 160821520 + 2 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) -20716 NM_001317911 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 282-311 chr3 143305378 143305614 + 2 NA intron (NM_173653, intron 14 of 15) MIRb|SINE|MIR -36750 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 366-295 chr3 193345690 193345991 + 2 NA intron (NM_198505, intron 7 of 29) MIR3|SINE|MIR 32913 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 564-108 chr2 210504036 210504462 + 2 NA intron (NM_001122633, intron 1 of 38) intron (NM_001122633, intron 1 of 38) -15469 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 553-233 chr8 106803167 106803681 + 2 NA Intergenic Intergenic -33180 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 337-183 chr15 91164260 91164492 + 2 NA intron (NM_001323040, intron 2 of 12) MLT1E3|LTR|ERVL-MaLR 62580 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 546-251 chr8 140408402 140408764 + 2 NA intron (NM_001321646, intron 4 of 21) intron (NM_001321646, intron 4 of 21) 49161 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 195-52 chr12 41011248 41011414 + 2 NA intron (NM_001843, intron 17 of 23) HUERS-P3-int|LTR|ERV1 102974 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 377-200 chr2 57943318 57943546 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 35781 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 320-121 chr12 58518272 58518460 + 2 NA Intergenic LOR1b|LTR|ERV1 -73336 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 300-196 chr2 76416011 76416260 + 2 NA Intergenic MER51D|LTR|ERV1 -569830 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 321-403 chr4 11299597 11299898 + 2 NA Intergenic Intergenic -69080 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 371-222 chr20 54858148 54858447 + 2 NA Intergenic MER89|LTR|ERV1 382704 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 367-438 chr8 24678305 24678620 + 2 NA Intergenic L1M4|LINE|L1 -129844 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 330-288 chr2 129617817 129618092 + 2 NA Intergenic Intergenic 259537 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 246-94 chr12 58847599 58847735 + 2 NA Intergenic Intergenic -65951 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 598-44 chr14 63270204 63270650 + 2 NA intron (NM_020663, intron 2 of 4) intron (NM_020663, intron 2 of 4) 48508 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 235-247 chr4 36433289 36433494 + 2 NA Intergenic Intergenic -6963 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 339-456 chr5 101015977 101016218 + 2 NA Intergenic L1MA8|LINE|L1 -112815 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 257-280 chr3 144755235 144755463 + 2 NA Intergenic MIRb|SINE|MIR 782268 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 415-140 chr2 147179110 147179505 + 2 NA Intergenic L1M4|LINE|L1 592250 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 211-139 chr2 56710925 56711093 + 2 NA Intergenic Intergenic -525239 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 336-447 chr5 29952802 29953092 + 2 NA Intergenic L2|LINE|L2 72387 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 341-131 chr13 39358376 39358579 + 2 NA intron (NM_005780, intron 3 of 3) L1PA8|LINE|L1 244716 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 395-304 chr7 12275989 12276275 + 2 NA Intergenic L1MA4A|LINE|L1 64838 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 613-81 chr3 71800043 71800610 + 2 NA Intergenic Intergenic -15178 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 551-67 chr16 80052770 80053161 + 2 NA Intergenic L1MC3|LINE|L1 257716 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 328-383 chr4 11891628 11891834 + 2 NA Intergenic L1MB8|LINE|L1 108553 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 550-45 chr11 47632174 47632631 + 2 NA intron (NM_014342, intron 5 of 12) AluY|SINE|Alu 10157 NM_014342 23788 Hs.269944 NM_014342 ENSG00000109919 MTCH2 HSPC032|MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 417-213 chr5 38785975 38786301 + 2 NA intron (NR_109951, intron 2 of 3) THE1B-int|LTR|ERVL-MaLR 59691 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 226-38 chr10 43731666 43731794 + 2 NA Intergenic LTR52|LTR|ERVL 47095 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 230-190 chr2 184564237 184564408 + 2 NA Intergenic Intergenic -34207 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 249-239 chr20 31249128 31249287 + 2 NA Intergenic MER65-int|LTR|ERV1 -8457 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 238-208 chr20 50290937 50291117 + 2 NA Intergenic L2c|LINE|L2 -1693 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 194-186 chr6 95783004 95783158 + 2 NA Intergenic Intergenic 205546 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 198-187 chr4 154873404 154873571 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 91982 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 223-360 chr9 27859738 27859931 + 2 NA Intergenic Intergenic -285968 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 328-187 chr15 99968010 99968204 + 2 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 161084 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 198-83 chr16 78447867 78447972 + 2 NA intron (NM_001291997, intron 7 of 7) AluSx1|SINE|Alu 348265 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 247-417 chr8 118905623 118905828 + 2 NA Intergenic Intergenic 46160 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 325-253 chr2 4107460 4107653 + 2 NA Intergenic Intergenic 133395 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 549-177 chr6 12439618 12439999 + 2 NA Intergenic Intergenic 145596 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 267-335 chr5 85970591 85970847 + 2 NA Intergenic Intergenic -311725 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 177-66 chr17 70789198 70789331 + 2 NA Intergenic Intergenic 412915 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 230-31 chr10 2274378 2274528 + 2 NA Intergenic L1MCc|LINE|L1 40621 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 334-379 chr4 66124991 66125316 + 2 NA Intergenic Intergenic -151671 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 230-275 chr4 133585796 133585999 + 2 NA Intergenic MER52-int|LTR|ERV1 436603 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 123-3 chr10 16681098 16681166 + 2 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) 136292 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 225-280 chr5 57463634 57463805 + 2 NA Intergenic (TATAT)n|Simple_repeat|Simple_repeat 19092 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 339-210 chr17 38997327 38997648 + 2 NA Intergenic L1ME3E|LINE|L1 29623 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 290-152 chr16 12695185 12695417 + 2 NA intron (NM_001099455, intron 2 of 2) AluJr|SINE|Alu -25020 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 370-317 chr3 115184686 115184919 + 2 NA Intergenic LTR12C|LTR|ERV1 -37514 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 236-138 chr17 11698707 11698853 + 2 NA intron (NM_001372, intron 22 of 68) intron (NM_001372, intron 22 of 68) 100310 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 212-27 chr10 5107091 5107245 + 2 NA intron (NM_003739, intron 8 of 8) (ACAGTAG)n|Simple_repeat|Simple_repeat 12754 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 494-195 chr4 26113056 26113489 + 2 NA Intergenic Intergenic 199080 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 219-177 chr2 113003302 113003479 + 2 NA Intergenic Intergenic -2069 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 318-485 chr6 119075159 119075380 + 2 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) 3395 NM_024581 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 571-80 chr2 137438699 137439149 + 2 NA intron (NM_001316349, intron 14 of 27) MLT1C|LTR|ERVL-MaLR 489008 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 225-139 chr19 37432049 37432216 + 2 NA intron (NM_152484, intron 3 of 5) L1MA3|LINE|L1 35312 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 469-21 chr1 208818842 208819143 + 2 NA Intergenic Intergenic 90304 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 383-260 chr3 143219763 143219985 + 2 NA Intergenic LTR49-int|LTR|ERV1 100103 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 314-230 chr17 78578672 78578910 + 2 NA Intergenic L1M4|LINE|L1 -1397 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 606-170 chr8 132433496 132433919 + 2 NA intron (NM_004519, intron 1 of 14) AluSx|SINE|Alu 13555 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 391-227 chr3 30146517 30146779 + 2 NA Intergenic Intergenic -212492 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 360-280 chr21 34682243 34682442 + 2 NA intron (NM_053277, intron 1 of 5) L1ME4b|LINE|L1 13348 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 552-44 chr12 34455294 34455726 + 2 NA Intergenic ALR/Alpha|Satellite|centr 433014 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 304-460 chr6 54833975 54834214 + 2 NA Intergenic L1ME3Cz|LINE|L1 -12677 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 253-8 chr1 76401058 76401263 + 2 NA intron (NM_001349111, intron 3 of 5) L1ME2z|LINE|L1 326414 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 406-154 chr2 124507947 124508222 + 2 NA intron (NM_130773, intron 8 of 23) intron (NM_130773, intron 8 of 23) 482797 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 219-23 chr1 194006787 194007004 + 2 NA Intergenic Intergenic 702150 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 298-189 chr19 37689947 37690214 + 2 NA intron (NM_152605, intron 2 of 3) Tigger4a|DNA|TcMar-Tigger 2235 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 323-579 chr9 71987856 71988128 + 2 NA Intergenic MER49|LTR|ERV1 72613 NM_001128618 138240 Hs.371235 NM_001128618 ENSG00000204669 C9orf57 - chromosome 9 open reading frame 57 protein-coding 260-462 chr9 135649160 135649321 + 2 NA Intergenic MER4B-int|LTR|ERV1 -9700 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 574-127 chr4 63153830 63154283 + 2 NA Intergenic L1PB2|LINE|L1 -992291 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 256-277 chr3 178795862 178796051 + 2 NA intron (NM_005832, intron 2 of 5) intron (NM_005832, intron 2 of 5) 64449 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 338-150 chr13 69005384 69005641 + 2 NA Intergenic Intergenic -120187 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 309-440 chr5 64395325 64395610 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger -110548 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 420-40 chr10 78243436 78243738 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -5038 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 158-70 chr3 4615724 4615858 + 2 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 122443 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 343-546 chr8 101754017 101754190 + 2 NA intron (NM_001040625, intron 4 of 6) MIRc|SINE|MIR 36866 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 162-99 chr4 105383367 105383462 + 2 NA intron (NM_176869, intron 10 of 11) intron (NM_176869, intron 10 of 11) -30533 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 224-323 chr8 80183885 80184062 + 2 NA Intergenic Intergenic -12409 NR_105034 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 230-116 chr14 67915212 67915382 + 2 NA intron (NM_133509, intron 7 of 10) MLT1K|LTR|ERVL-MaLR 91705 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 277-322 chr5 58670963 58671108 + 2 NA intron (NM_138453, intron 2 of 4) MIRb|SINE|MIR 87960 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 348-185 chr17 54058242 54058434 + 2 NA Intergenic AluY|SINE|Alu 235411 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 363-232 chr2 161784752 161785092 + 2 NA intron (NM_001354453, intron 2 of 24) L1M3d|LINE|L1 160506 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 189-122 chr3 2013850 2014006 + 2 NA Intergenic Intergenic -84875 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 323-586 chr9 105081023 105081300 + 2 NA Intergenic LTR8A|LTR|ERV1 -153006 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 262-39 chr10 13893262 13893472 + 2 NA intron (NM_018027, intron 2 of 24) L3b|LINE|CR1 78529 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 292-41 chr10 49486657 49486818 + 2 NA intron (NM_001346440, intron 8 of 20) L1M5|LINE|L1 37544 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 281-60 chr11 37701961 37702198 + 2 NA Intergenic L2b|LINE|L2 -236522 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 340-283 chr2 142320805 142321025 + 2 NA Intergenic LFSINE_Vert|SINE|tRNA -189214 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 292-385 chr6 86345165 86345388 + 2 NA Intergenic L1MA3|LINE|L1 -592252 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 194-68 chr15 95808725 95808887 + 2 NA Intergenic Intergenic 319035 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 219-234 chr3 76619550 76619744 + 2 NA Intergenic Intergenic -420452 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 128-8 chr10 58136770 58136841 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 131089 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 168-66 chr2 194581896 194582060 + 2 NA Intergenic L1MEf|LINE|L1 -148617 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 490-282 chr8 19544095 19544464 + 2 NA intron (NM_001354497, intron 1 of 7) intron (NM_001354497, intron 1 of 7) 58266 NM_001354499 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 300-203 chr2 104964713 104964919 + 2 NA intron (NR_110603, intron 1 of 2) L1MB2|LINE|L1 -73253 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 502-32 chr10 39257752 39258210 + 2 NA Intergenic ALR/Alpha|Satellite|centr 561385 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 509-144 chr3 27282167 27282520 + 2 NA intron (NM_152534, intron 23 of 38) intron (NM_152534, intron 23 of 38) -65820 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 404-329 chr8 123832866 123833178 + 2 NA Intergenic Intergenic -18965 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 308-253 chr2 176167125 176167314 + 2 NA intron (NM_006898, intron 2 of 3) intron (NM_006898, intron 2 of 3) 9912 NM_006898 3232 Hs.93574 NM_006898 ENSG00000128652 HOXD3 HOX1D|HOX4|HOX4A|Hox-4.1 homeobox D3 protein-coding 517-27 chr10 15968099 15968531 + 2 NA Intergenic Intergenic -107782 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 298-319 chr4 33283805 33284098 + 2 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 755942 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 200-292 chr9 134077319 134077503 + 2 NA Intergenic L1MB5|LINE|L1 -9385 NM_007371 8019 Hs.522472 NM_007371 ENSG00000169925 BRD3 ORFX|RING3L bromodomain containing 3 protein-coding 356-415 chr5 148472771 148473094 + 2 NA intron (NM_199453, intron 5 of 6) intron (NM_199453, intron 5 of 6) 88974 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 333-571 chr8 89768188 89768423 + 2 NA intron (NM_003821, intron 3 of 10) L3|LINE|CR1 10489 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 127-54 chr3 29462481 29462576 + 2 NA intron (NM_001003792, intron 2 of 13) intron (NM_001003792, intron 2 of 13) 181216 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 302-239 chr2 180817016 180817204 + 2 NA intron (NR_104324, intron 3 of 4) L1MB2|LINE|L1 125006 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 408-311 chr7 8435681 8435900 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 2181 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 267-460 chrX 93519252 93519513 + 2 NA Intergenic MIRb|SINE|MIR 154196 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 382-410 chr8 89506838 89507155 + 2 NA Intergenic L1ME3B|LINE|L1 250715 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 312-411 chr5 35562211 35562453 + 2 NA Intergenic MamGypLTR2b|LTR|Gypsy -55531 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 262-358 chr6 2483340 2483573 + 2 NA Intergenic Intergenic -151044 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 512-280 chr8 127464505 127464846 + 2 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 17464 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 210-90 chr16 6807797 6807956 + 2 NA intron (NM_001142334, intron 1 of 13) (TA)n|Simple_repeat|Simple_repeat 34067 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 391-92 chr13 111573233 111573465 + 2 NA Intergenic Intergenic -22660 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 320-184 chr16 10446413 10446712 + 2 NA intron (NR_045816, intron 6 of 9) HERVI-int|LTR|ERV1 60501 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 559-49 chr14 78510443 78510883 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 106944 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 521-59 chr12 9008105 9008548 + 2 NA intron (NM_005810, intron 3 of 4) intron (NM_005810, intron 3 of 4) 18701 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 338-140 chr12 119298483 119298697 + 2 NA intron (NR_024246, intron 2 of 3) MSTD|LTR|ERVL-MaLR 4790 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 222-325 chr6 65653875 65654050 + 2 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 53263 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 357-356 chr5 110950985 110951281 + 2 NA Intergenic MER50|LTR|ERV1 -118947 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 327-110 chr12 28270324 28270530 + 2 NA intron (NM_001352082, intron 4 of 13) intron (NM_001352082, intron 4 of 13) -79689 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 443-31 chr1 240843584 240843930 + 2 NA intron (NM_001350116, intron 9 of 16) (TTTAA)n|Simple_repeat|Simple_repeat -231602 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 369-61 chr11 76243741 76244051 + 2 NA Intergenic Intergenic -37394 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 406-85 chr14 70775058 70775387 + 2 NA intron (NM_001284231, intron 1 of 11) MIRb|SINE|MIR 8230 NM_001284231 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 191-110 chr2 146297855 146297980 + 2 NA Intergenic Intergenic -289140 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 526-8 chr1 177756763 177757179 + 2 NA Intergenic Intergenic 56447 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 348-136 chr14 53467179 53467389 + 2 NA Intergenic L1M1|LINE|L1 313930 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 380-269 chr4 8664329 8664630 + 2 NA Intergenic Intergenic 71714 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 340-492 chr7 400153 400391 + 2 NA Intergenic L2a|LINE|L2 20847 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 355-213 chr18 23018698 23018993 + 2 NA intron (NM_002894, intron 17 of 18) intron (NM_002894, intron 17 of 18) 84969 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 158-110 chr8 15131939 15132062 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 106431 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 319-30 chr1 173519979 173520206 + 2 NA intron (NM_178527, intron 22 of 27) AluSz|SINE|Alu 42757 NM_004905 9588 Hs.120 NM_004905 ENSG00000117592 PRDX6 1-Cys|AOP2|HEL-S-128m|NSGPx|PRX|aiPLA2|p29 peroxiredoxin 6 protein-coding 382-321 chr5 25466216 25466546 + 2 NA Intergenic Intergenic 275428 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 250-312 chr4 79136570 79136771 + 2 NA intron (NR_038342, intron 3 of 5) L1PA14|LINE|L1 164922 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 467-297 chr9 35493848 35494249 + 2 NA intron (NM_001330740, intron 1 of 10) L1MB3|LINE|L1 3937 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 545-56 chr12 24555059 24555494 + 2 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 7215 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 221-291 chr8 3490291 3490424 + 2 NA intron (NM_033225, intron 11 of 69) intron (NM_033225, intron 11 of 69) -761906 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 378-408 chr7 68918038 68918333 + 2 NA Intergenic Intergenic 679439 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 432-84 chr14 79880516 79880832 + 2 NA Intergenic Intergenic -330745 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 162-90 chr3 147661579 147661711 + 2 NA Intergenic Intergenic 240318 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 241-148 chr17 78594382 78594555 + 2 NA Intergenic MER4D|LTR|ERV1 -17074 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 445-191 chr4 34408955 34409210 + 2 NA Intergenic L1PA14|LINE|L1 -139335 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 472-76 chr13 95336151 95336497 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -34873 NM_001301829 10257 Hs.508423 NM_005845 ENSG00000125257 ABCC4 MOAT-B|MOATB|MRP4 ATP binding cassette subfamily C member 4 protein-coding 221-91 chr15 57348562 57348723 + 2 NA Intergenic L1MC5|LINE|L1 -27863 NM_032866 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 192-84 chr17 54225289 54225454 + 2 NA Intergenic LTR85b|LTR|Gypsy? 402444 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 346-132 chr14 46611689 46611947 + 2 NA Intergenic Intergenic 39963 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 353-442 chr6 46009212 46009491 + 2 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 6509 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 133-65 chr5 94130002 94130092 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -18348 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 236-44 chr10 61354346 61354500 + 2 NA Intergenic Intergenic -98216 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 263-67 chr11 22141000 22141205 + 2 NA Intergenic MIR3|SINE|MIR -51983 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 346-81 chr11 104359736 104359988 + 2 NA Intergenic L1MD1|LINE|L1 -195715 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 556-82 chr17 65807805 65808230 + 2 NA intron (NR_126542, intron 1 of 5) MSTA-int|LTR|ERVL-MaLR 18434 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 397-303 chr7 38676841 38677205 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 10066 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 526-34 chr11 18157546 18157897 + 2 NA Intergenic Intergenic -15116 NM_054032 117196 Hs.632138 NM_054032 ENSG00000179817 MRGPRX4 GPCR|MRGX4|SNSR6 MAS related GPR family member X4 protein-coding 403-213 chr4 30813783 30814106 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 93575 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 277-466 chrX 78239145 78239408 + 2 NA Intergenic Intergenic 88335 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 155-100 chr9 102739948 102740060 + 2 NA Intergenic Intergenic 220367 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 199-76 chr16 76285556 76285738 + 2 NA intron (NR_136213, intron 1 of 23) intron (NR_136213, intron 1 of 23) 8246 NM_001322191 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 388-6 chr1 62671305 62671650 + 2 NA intron (NM_001367561, intron 1 of 49) GA-rich|Low_complexity|Low_complexity 16891 NM_001272000 85440 Hs.744927 NM_033407 ENSG00000116641 DOCK7 EIEE23|ZIR2 dedicator of cytokinesis 7 protein-coding 531-76 chr15 100462060 100462419 + 2 NA intron (NM_001290341, intron 12 of 13) intron (NM_001290341, intron 12 of 13) 82047 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 434-130 chr2 11916012 11916269 + 2 NA Intergenic MER3|DNA|hAT-Charlie -79154 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 255-274 chr3 173781716 173781913 + 2 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 138982 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 281-367 chr5 93481121 93481311 + 2 NA intron (NR_021491, intron 4 of 5) L1MB5|LINE|L1 90127 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 479-247 chr8 82407689 82408015 + 2 NA Intergenic MER57A-int|LTR|ERV1 -504252 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 384-42 chr10 76933316 76933573 + 2 NA intron (NM_001271519, intron 23 of 28) intron (NM_001271519, intron 23 of 28) 45400 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 420-122 chr2 8668778 8669000 + 2 NA Intergenic Intergenic 12972 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 256-423 chr8 88685146 88685390 + 2 NA Intergenic L2c|LINE|L2 -357785 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 520 chr1 18747987 18748500 + 2 NA 3' UTR (NM_001135254, exon 9 of 9) 3' UTR (NM_001135254, exon 9 of 9) 111418 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 416-272 chr5 51489614 51489893 + 2 NA Intergenic Intergenic 106305 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 276-49 chr10 30770971 30771236 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 47884 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 377-305 chr5 12028011 12028343 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -123731 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 340-286 chr2 144313438 144313724 + 2 NA intron (NM_001354354, intron 1 of 12) intron (NM_001354354, intron 1 of 12) -18268 NM_001354361 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 573-159 chr5 156524824 156525340 + 2 NA intron (NM_001128209, intron 3 of 7) L1MA9|LINE|L1 197918 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 261-382 chr8 101765729 101765961 + 2 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 25124 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 276-240 chr2 142466184 142466335 + 2 NA Intergenic Intergenic -334558 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 212-109 chr15 89786760 89786941 + 2 NA intron (NM_001150, intron 20 of 20) L1MB7|LINE|L1 10518 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 522-60 chr12 37778897 37779337 + 2 NA Intergenic L1PA3|LINE|L1 -537657 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 207-154 chr2 172830683 172830853 + 2 NA intron (NM_001100397, intron 1 of 27) AluJb|SINE|Alu 9181 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 515-227 chr6 11391582 11392029 + 2 NA Intergenic Intergenic -9457 NM_001142393 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 247-438 chrUn_GL000216v2 141093 141239 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 646-88 chr3 87620593 87621001 + 2 NA Intergenic Intergenic -171909 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 437-74 chr14 52968509 52968816 + 2 NA Intergenic L1MA2|LINE|L1 -17565 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 191-143 chr4 22034091 22034259 + 2 NA Intergenic LTR33B|LTR|ERVL -85424 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 214-29 chr1 239514557 239514746 + 2 NA intron (NM_001347716, intron 2 of 7) L1MC|LINE|L1 -114422 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 291-413 chr7 54415409 54415652 + 2 NA Intergenic L1MA9|LINE|L1 84833 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 213-218 chr4 162292004 162292167 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -128051 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 341-93 chr11 93886522 93886766 + 2 NA Intergenic Intergenic -36026 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 170-2 chr1 42648698 42648833 + 2 NA intron (NM_001080850, intron 15 of 16) L1MA3|LINE|L1 -9658 NM_006347 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 252-380 chr6 142099722 142099911 + 2 NA intron (NM_001324308, intron 1 of 2) L1MC1|LINE|L1 -11017 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 240-246 chr2 183397488 183397687 + 2 NA Intergenic Intergenic 273144 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 413-281 chr7 96262025 96262394 + 2 NA intron (NM_001160210, intron 3 of 17) intron (NM_001160210, intron 3 of 17) -42453 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 447-207 chr5 27877594 27878035 + 2 NA Intergenic L1MC1|LINE|L1 405522 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 450-201 chr3 99443179 99443610 + 2 NA Intergenic L2a|LINE|L2 -195200 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 302-363 chr5 161141940 161142166 + 2 NA Intergenic Intergenic -203427 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 348-535 chr8 124246596 124246858 + 2 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 671 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 326-118 chr12 9862639 9862946 + 2 NA intron (NM_005127, intron 1 of 4) L1M3f|LINE|L1 7067 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 239-153 chr19 9448948 9449086 + 2 NA Intergenic L1PA16|LINE|L1 -13439 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 457-269 chr9 29539313 29539676 + 2 NA Intergenic L2|LINE|L2 -325893 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 604-171 chr8 136388987 136389391 + 2 NA Intergenic Intergenic -141609 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 304-332 chr3 48054323 48054483 + 2 NA intron (NM_002375, intron 1 of 18) AluSx3|SINE|Alu 34445 NM_030885 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 441-68 chr13 76842160 76842525 + 2 NA Intergenic L2b|LINE|L2 44063 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 542-208 chr7 113225097 113225482 + 2 NA Intergenic Intergenic -106707 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 209-347 chr9 82527872 82528037 + 2 NA Intergenic L1MEc|LINE|L1 535188 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 308-433 chr6 139940535 139940789 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -35657 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 277-386 chr7 86408141 86408296 + 2 NA Intergenic Intergenic -235691 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 443-131 chr18 43322443 43322788 + 2 NA Intergenic Intergenic -45125 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 263-437 chr8 136242657 136242850 + 2 NA Intergenic AluJr|SINE|Alu -288045 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 135-72 chr8 142863784 142863911 + 2 NA Intergenic L1PB4|LINE|L1 15973 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 390-86 chr14 28663698 28664025 + 2 NA Intergenic L1MD|LINE|L1 101458 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 240-283 chr3 47878140 47878301 + 2 NA intron (NM_002375, intron 8 of 18) L1ME4b|LINE|L1 28665 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 345-435 chr5 115488107 115488382 + 2 NA Intergenic MIRb|SINE|MIR 56531 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 813-35 chr6 93465148 93465652 + 2 NA Intergenic MIRc|SINE|MIR -45818 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 323-282 chr2 184528289 184528566 + 2 NA Intergenic MER52-int|LTR|ERV1 -70102 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 367-128 chr14 80137247 80137515 + 2 NA Intergenic Intergenic -74038 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 288-146 chr16 34620726 34620874 + 2 NA Intergenic ALR/Alpha|Satellite|centr -239320 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 322-317 chr3 1155802 1155985 + 2 NA intron (NM_001289080, intron 2 of 22) intron (NM_001289080, intron 2 of 22) 62869 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 226-301 chr6 69117881 69118068 + 2 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 482692 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 242-306 chr5 76440304 76440504 + 2 NA intron (NM_006633, intron 1 of 35) intron (NM_006633, intron 1 of 35) 37119 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 331-506 chr7 70130220 70130523 + 2 NA intron (NM_015570, intron 3 of 18) intron (NM_015570, intron 3 of 18) 531896 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 321-390 chr3 148341538 148341788 + 2 NA intron (NR_146712, intron 3 of 4) L1MEi|LINE|L1 60772 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 457-95 chr17 69699203 69699591 + 2 NA intron (NR_109972, intron 3 of 4) THE1A|LTR|ERVL-MaLR 105410 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 301-427 chr7 89576908 89577188 + 2 NA Intergenic L1PREC2|LINE|L1 -542352 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 358-78 chr11 98226429 98226637 + 2 NA Intergenic Intergenic -794416 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 192-179 chr6 131200601 131200758 + 2 NA intron (NM_016377, intron 6 of 7) intron (NM_016377, intron 6 of 7) -49725 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 206-87 chr16 28270762 28270899 + 2 NA Intergenic HAL1|LINE|L1 -21695 NM_001024401 388228 Hs.97837 NM_001024401 ENSG00000188322 SBK1 SBK SH3 domain binding kinase 1 protein-coding 148-22 chr13 88510532 88510617 + 2 NA Intergenic Intergenic -30255 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 531-40 chr11 109350612 109350981 + 2 NA Intergenic L2b|LINE|L2 -71394 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 451-238 chr8 120272556 120272874 + 2 NA intron (NM_021110, intron 26 of 47) L1PB3|LINE|L1 147613 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 199-50 chr12 128316599 128316768 + 2 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 22591 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 306-516 chr8 106908173 106908357 + 2 NA Intergenic L1MEd|LINE|L1 -138021 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 579-106 chr3 152093524 152093936 + 2 NA Intergenic L1MEc|LINE|L1 111699 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 739-74 chr9 31739338 31739708 + 2 NA Intergenic Intergenic -358033 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 386-79 chr12 103317206 103317510 + 2 NA intron (NM_001099336, intron 4 of 5) intron (NM_001099336, intron 4 of 5) 165516 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 242-165 chr2 29187410 29187572 + 2 NA Intergenic Intergenic 36409 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 257-248 chr21 20736622 20736855 + 2 NA Intergenic Intergenic 66370 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 319-124 chr13 33896985 33897218 + 2 NA intron (NM_181558, intron 8 of 8) L1MA4|LINE|L1 78952 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 342-553 chr9 74877408 74877623 + 2 NA intron (NM_017662, intron 1 of 38) L1M2|LINE|L1 9832 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 239-20 chr1 239700742 239700915 + 2 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 18291 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 305-436 chr5 64017240 64017425 + 2 NA Intergenic Intergenic -55040 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 411-97 chr15 26601275 26601520 + 2 NA intron (NM_001191320, intron 2 of 6) AluSx|SINE|Alu 27693 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 371-114 chr14 95188763 95188949 + 2 NA 3' UTR (NM_024734, exon 13 of 13) 3' UTR (NM_024734, exon 13 of 13) -30846 NM_030621 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 258-183 chr2 56805462 56805686 + 2 NA Intergenic Intergenic -619804 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 386-131 chr17 73484378 73484604 + 2 NA intron (NM_001144952, intron 2 of 44) intron (NM_001144952, intron 2 of 44) -29192 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 355-3 chr1 26720344 26720619 + 2 NA intron (NM_139135, intron 1 of 19) AluSx|SINE|Alu 24466 NM_139135 8289 Hs.468972 NM_006015 ENSG00000117713 ARID1A B120|BAF250|BAF250a|BM029|C1orf4|CSS2|ELD|MRD14|OSA1|P270|SMARCF1|hELD|hOSA1 AT-rich interaction domain 1A protein-coding 375-149 chr15 91822448 91822651 + 2 NA Intergenic Intergenic -31159 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 395-131 chr16 82550607 82550915 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -76208 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 263-405 chr7 140068904 140069090 + 2 NA Intergenic L1M4|LINE|L1 -5276 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 293-61 chr11 71382940 71383107 + 2 NA Intergenic AluJr|SINE|Alu 40331 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 379-56 chr11 69252461 69252722 + 2 NA Intergenic Intergenic -41564 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 390-102 chr14 69909076 69909425 + 2 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) 29834 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 367-236 chr2 196535355 196535577 + 2 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 57517 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 310-507 chr8 46529626 46529923 + 2 NA Intergenic ALR/Alpha|Satellite|centr 87869 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 518-111 chr18 2811112 2811587 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -35657 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 264-408 chr8 51527088 51527343 + 2 NA intron (NM_144651, intron 4 of 22) intron (NM_144651, intron 4 of 22) 282230 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 516-232 chr7 42794728 42795182 + 2 NA Intergenic Intergenic -88508 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 570-148 chr4 108009412 108009848 + 2 NA intron (NM_001331027, intron 1 of 7) intron (NM_001331027, intron 1 of 7) 4966 NM_001331027 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 353-165 chr15 94715556 94715886 + 2 NA Intergenic Intergenic -139642 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 399-206 chr3 55978527 55978778 + 2 NA intron (NR_132749, intron 11 of 17) MIRb|SINE|MIR -126058 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 355-425 chr6 2495897 2496094 + 2 NA Intergenic Intergenic -138505 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 313-183 chr16 25998359 25998527 + 2 NA intron (NM_006040, intron 1 of 1) L3b|LINE|CR1 -26794 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 137-5 chr1 183322829 183322948 + 2 NA intron (NM_015039, intron 1 of 10) L2c|LINE|L2 -18014 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 353-197 chr17 72827644 72827905 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -187302 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 298-250 chr20 12552069 12552263 + 2 NA Intergenic Intergenic 384797 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 551-195 chr7 68118721 68119161 + 2 NA Intergenic LTR8B|LTR|ERV1 98688 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 430-339 chr9 115126147 115126485 + 2 NA non-coding (NR_110950, exon 4 of 6) non-coding (NR_110950, exon 4 of 6) -8159 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 335-6 chr1 56608217 56608488 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -28789 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 328-484 chr6 5060894 5061177 + 2 NA intron (NR_126015, intron 2 of 3) intron (NR_126015, intron 2 of 3) -24451 NM_001145115 648791 Hs.653089 NM_001145115 ENSG00000219607 PPP1R3G - protein phosphatase 1 regulatory subunit 3G protein-coding 307-290 chr3 6632759 6632957 + 2 NA intron (NR_110123, intron 3 of 3) intron (NR_110123, intron 3 of 3) 172591 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 192-69 chr14 76658339 76658482 + 2 NA Intergenic MIR|SINE|MIR -103058 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 226-356 chr8 120796971 120797132 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 14995 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 403-202 chr3 134160161 134160539 + 2 NA intron (NM_001005861, intron 13 of 14) intron (NM_001005861, intron 13 of 14) 90394 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 240-18 chr1 163305839 163306017 + 2 NA intron (NR_045630, intron 3 of 3) intron (NR_045630, intron 3 of 3) 15863 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 268-96 chr12 88586242 88586450 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -5873 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 328-131 chr13 72711126 72711385 + 2 NA intron (NM_001071775, intron 2 of 2) intron (NM_001071775, intron 2 of 2) 16374 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 202-111 chr2 19889366 19889523 + 2 NA Intergenic Intergenic 12539 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 178-93 chr3 182368732 182368899 + 2 NA Intergenic Intergenic 117547 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 302-364 chr5 162333712 162333904 + 2 NA Intergenic L1MC3|LINE|L1 266166 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 231-158 chr2 49057483 49057666 + 2 NA intron (NM_000145, intron 2 of 9) L1M2c|LINE|L1 -2029 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 478-163 chr20 48447128 48447435 + 2 NA Intergenic L1ME3|LINE|L1 87370 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 465-115 chr18 26317517 26317859 + 2 NA intron (NM_005640, intron 10 of 14) MLT1A|LTR|ERVL-MaLR 91243 NM_001293725 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 600-100 chr5 26983926 26984385 + 2 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 54431 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 339-393 chr4 7319109 7319420 + 2 NA intron (NM_020777, intron 1 of 26) L1MCc|LINE|L1 8814 NR_039961 100616471 NR_039961 ENSG00000264658 MIR4798 - microRNA 4798 ncRNA 620-8 chr1 208024854 208025461 + 2 NA 3' UTR (NM_025179, exon 32 of 32) 3' UTR (NM_025179, exon 32 of 32) -114032 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 164-122 chrX 126084034 126084155 + 2 NA Intergenic L1ME3|LINE|L1 -25668 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 220-362 chr8 53643571 53643776 + 2 NA Intergenic Intergenic -119708 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 352-365 chr4 62319774 62320114 + 2 NA Intergenic L2|LINE|L2 -158179 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 398-205 chr3 73180078 73180424 + 2 NA Intergenic AluSz6|SINE|Alu 118592 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 584-126 chr5 10197336 10197788 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 52326 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 467-140 chr2 143491332 143491760 + 2 NA intron (NM_018460, intron 9 of 13) intron (NM_018460, intron 9 of 13) 362127 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 239-214 chr20 58299851 58300010 + 2 NA intron (NR_003505, intron 2 of 16) L1ME3A|LINE|L1 9509 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 436-125 chr2 20893027 20893416 + 2 NA Intergenic L1PA16|LINE|L1 -70091 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 313-509 chr7 109784683 109784987 + 2 NA Intergenic Intergenic 175378 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 570-55 chr13 107358583 107358995 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -37826 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 437-257 chr7 71924710 71924936 + 2 NA intron (NM_001363460, intron 4 of 5) L1MCa|LINE|L1 412568 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 344-18 chr1 104516746 104517078 + 2 NA Intergenic L1MC3|LINE|L1 443889 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 490-29 chr1 195077361 195077783 + 2 NA Intergenic Intergenic 1011143 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 336-531 chr7 156916144 156916445 + 2 NA Intergenic (TATAGA)n|Simple_repeat|Simple_repeat -23086 NR_146959 64327 Hs.209989 NM_022458 ENSG00000105983 LMBR1 ACHP|C7orf2|DIF14|LSS|PPD2|THYP|TPT|ZRS limb development membrane protein 1 protein-coding 306-268 chr2 237050281 237050496 + 2 NA intron (NR_135202, intron 5 of 6) L1ME3Cz|LINE|L1 5779 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 424-260 chr7 54338013 54338356 + 2 NA intron (NR_120516, intron 1 of 2) intron (NR_120516, intron 1 of 2) 7487 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 308-317 chr4 22496209 22496438 + 2 NA intron (NM_145290, intron 1 of 18) MIR|SINE|MIR -18989 NR_162129 113219450 NR_162129 MIR12115 - microRNA 12115 ncRNA 241-35 chr10 44420503 44420664 + 2 NA Intergenic Intergenic -35486 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 317-461 chr7 94514622 94514916 + 2 NA intron (NM_001363428, intron 1 of 17) intron (NM_001363428, intron 1 of 17) 4960 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 347-230 chr2 83666006 83666286 + 2 NA Intergenic L2a|LINE|L2 143332 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 367-487 chrX 37389177 37389397 + 2 NA intron (NM_000950, intron 2 of 4) MSTA-int|LTR|ERVL-MaLR 39923 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 711-23 chr14 84190932 84191387 + 2 NA Intergenic L1ME3F|LINE|L1 -1080773 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 371-185 chr2 129632026 129632316 + 2 NA Intergenic L1MB7|LINE|L1 245320 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 269-296 chr4 155129393 155129583 + 2 NA Intergenic Intergenic -79148 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 456-233 chr4 115750802 115751184 + 2 NA Intergenic L1MEc|LINE|L1 -548732 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 199-70 chr16 54974028 54974155 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 42892 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 488-197 chr4 126966861 126967218 + 2 NA Intergenic Intergenic -665918 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 502-85 chr14 60050541 60050946 + 2 NA intron (NR_075071, intron 29 of 32) L1PA11|LINE|L1 -41168 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 423-166 chr22 29938034 29938449 + 2 NA intron (NM_153051, intron 1 of 18) MER41E|LTR|ERV1 55067 NM_153051 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 324-271 chr2 107265497 107265800 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 83877 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 504-20 chr1 239691701 239692114 + 2 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 27212 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 535-214 chr6 40048453 40048803 + 2 NA Intergenic LTR26C|LTR|ERV1 -114166 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 354-254 chr20 5275508 5275787 + 2 NA Intergenic MamGypLTR2c|LTR|Gypsy 41085 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 315-59 chr10 66174855 66175086 + 2 NA intron (NM_001127384, intron 13 of 17) MIRc|SINE|MIR 603545 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 371-385 chr8 92553204 92553485 + 2 NA Intergenic Intergenic 102150 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 345-26 chr1 181632217 181632510 + 2 NA intron (NM_001205293, intron 6 of 47) MIR3|SINE|MIR 148846 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 374-122 chr16 13679365 13679668 + 2 NA Intergenic Intergenic -240641 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 305-109 chr12 12747779 12748040 + 2 NA intron (NM_001130415, intron 1 of 1) intron (NM_001130415, intron 1 of 1) -16740 NR_030344 693198 NR_030344 ENSG00000207983 MIR613 MIRN613|hsa-mir-613 microRNA 613 ncRNA 325-110 chr11 100840231 100840529 + 2 NA intron (NM_001367945, intron 5 of 25) intron (NM_001367945, intron 5 of 25) -93894 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 338-345 chr3 93968356 93968651 + 2 NA intron (NM_001314077, intron 1 of 15) MLT1C|LTR|ERVL-MaLR 5578 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 287-329 chr5 124159658 124159918 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 278732 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 225-110 chr16 9391455 9391638 + 2 NA intron (NR_135195, intron 1 of 2) L1MD1|LINE|L1 35958 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 152-65 chr3 127927635 127927748 + 2 NA intron (NM_001370224, intron 2 of 6) intron (NM_001370224, intron 2 of 6) 12459 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 287-91 chr11 75835393 75835551 + 2 NA intron (NM_003369, intron 1 of 14) MIRc|SINE|MIR 20262 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 195-240 chr8 106154010 106154131 + 2 NA Intergenic Intergenic -93567 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 362-435 chr8 75825264 75825501 + 2 NA Intergenic L1MEc|LINE|L1 285414 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 683-28 chr17 65830115 65830675 + 2 NA intron (NM_001353129, intron 21 of 26) L1M3b|LINE|L1 -3852 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 530-255 chr8 107793439 107793943 + 2 NA Intergenic L1M2|LINE|L1 288248 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 451-101 chr18 34084407 34084669 + 2 NA intron (NM_001353233, intron 5 of 11) L2c|LINE|L2 -35926 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 335-11 chr1 74394187 74394425 + 2 NA intron (NM_015978, intron 17 of 24) intron (NM_015978, intron 17 of 24) 89134 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 339-191 chr16 46478928 46479225 + 2 NA intron (NR_026556, intron 13 of 16) intron (NR_026556, intron 13 of 16) 90021 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 256-438 chr8 132303709 132303895 + 2 NA intron (NM_004519, intron 1 of 14) (AT)n|Simple_repeat|Simple_repeat 143460 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 381-315 chr5 92473948 92474250 + 2 NA Intergenic MSTA1-int|LTR|ERVL-MaLR -1090782 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 323-583 chr9 78959276 78959518 + 2 NA Intergenic Intergenic 186269 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 272-123 chr14 83802964 83803202 + 2 NA Intergenic Intergenic 1160451 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 214-349 chr9 17699188 17699353 + 2 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 120204 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 413-107 chr16 63699503 63699766 + 2 NA Intergenic HAL1|LINE|L1 1422429 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 391-347 chr8 68814691 68814929 + 2 NA intron (NR_146187, intron 12 of 13) intron (NR_146187, intron 12 of 13) 289380 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 760-81 chrX 109136601 109137161 + 2 NA Intergenic Intergenic 345205 NM_001522 2986 Hs.123074 NM_001522 ENSG00000101890 GUCY2F CYGF|GC-F|GUC2DL|GUC2F|RETGC-2|ROS-GC2 guanylate cyclase 2F, retinal protein-coding 236-26 chr1 194813067 194813255 + 2 NA Intergenic L2a|LINE|L2 1275554 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 328-325 chr21 16622612 16622901 + 2 NA intron (NR_136541, intron 7 of 9) intron (NR_136541, intron 7 of 9) 32519 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 269-208 chr2 146039073 146039270 + 2 NA Intergenic Intergenic -547886 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 318-215 chr18 11405378 11405651 + 2 NA Intergenic Intergenic -48964 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 221-272 chr7 8460353 8460529 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 26832 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 261-157 chr18 28763090 28763295 + 2 NA Intergenic Intergenic -586062 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 262-135 chr14 85675542 85675712 + 2 NA Intergenic Intergenic 142278 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 322-381 chr4 84141498 84141705 + 2 NA intron (NR_125909, intron 7 of 8) L1MD3|LINE|L1 157568 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 392-72 chr12 114970871 114971143 + 2 NA Intergenic Intergenic -286832 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 439-8 chr1 70811722 70812053 + 2 NA Intergenic Intergenic 105434 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 308-322 chr4 37150525 37150741 + 2 NA Intergenic L1MA1|LINE|L1 91358 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 319-519 chr8 33650172 33650392 + 2 NA Intergenic AluJr|SINE|Alu -50176 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 240-127 chr13 97155097 97155313 + 2 NA Intergenic Intergenic 24417 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 486-33 chr10 67440696 67441026 + 2 NA intron (NM_001127384, intron 5 of 17) L1M1|LINE|L1 -37451 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 353-536 chr8 122763162 122763345 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -18402 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 433-182 chr3 154850667 154851012 + 2 NA Intergenic Intergenic -173285 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 528-42 chr10 111776309 111776829 + 2 NA Intergenic Intergenic 407196 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 354-386 chr5 158548750 158549057 + 2 NA Intergenic L1PA7|LINE|L1 -139130 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 591-8 chr10 19149554 19150050 + 2 NA intron (NM_001142308, intron 11 of 39) L1ME1|LINE|L1 101001 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 314-348 chr21 20836524 20836736 + 2 NA Intergenic Intergenic -33522 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 344-467 chr7 115770407 115770661 + 2 NA Intergenic MIRb|SINE|MIR -189093 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 520-93 chr14 65984406 65984766 + 2 NA Intergenic MIR|SINE|MIR -501785 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 604-53 chr15 100447429 100447941 + 2 NA intron (NM_001290341, intron 13 of 13) L2c|LINE|L2 74746 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 321-247 chr18 37459020 37459324 + 2 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) 7332 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 295-296 chr3 68780792 68780947 + 2 NA intron (NM_001005527, intron 3 of 5) L1MEc|LINE|L1 151678 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 235-64 chr11 41784642 41784793 + 2 NA intron (NR_120584, intron 2 of 5) MER21C|LTR|ERVL 70149 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 134-7 chr1 181823947 181824030 + 2 NA Intergenic L1MEc|LINE|L1 237724 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 327-237 chr2 18095157 18095371 + 2 NA Intergenic Intergenic 216597 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 220-255 chr4 54772807 54773007 + 2 NA Intergenic Intergenic 114979 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 293-431 chr8 78905647 78905865 + 2 NA Intergenic Intergenic 68227 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 275-63 chr11 42273622 42273845 + 2 NA Intergenic MIR|SINE|MIR -20043 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 597-24 chr10 83612363 83612891 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 64462 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 403-116 chr15 93202675 93202927 + 2 NA Intergenic Intergenic -3265 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 427-55 chr12 80484854 80485241 + 2 NA intron (NM_001145026, intron 9 of 44) intron (NM_001145026, intron 9 of 44) 40812 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 197-194 chr7 49266852 49267007 + 2 NA Intergenic Intergenic 342382 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 569-79 chr19 9377565 9377972 + 2 NA intron (NM_001172650, intron 7 of 11) intron (NM_001172650, intron 7 of 11) 1452 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 304-118 chr12 86288706 86288907 + 2 NA intron (NM_001351286, intron 4 of 7) L1PA15|LINE|L1 -31507 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 573-203 chr8 132361431 132361797 + 2 NA intron (NM_004519, intron 1 of 14) A-rich|Low_complexity|Low_complexity 85648 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 395-195 chr20 31384312 31384608 + 2 NA intron (NR_073153, intron 1 of 2) intron (NR_073153, intron 1 of 2) 6130 NM_001271209 245932 Hs.516998 NM_153289 ENSG00000180483 DEFB119 DEFB-19|DEFB-20|DEFB120|DEFB20|ESC42-RELA|ESC42-RELB defensin beta 119 protein-coding 351-94 chr12 76994848 76995090 + 2 NA Intergenic L1MB1|LINE|L1 70600 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 398-266 chr5 37886474 37886683 + 2 NA Intergenic Intergenic 46140 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 281-107 chr13 87545947 87546102 + 2 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) 72716 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 294-44 chr10 74635563 74635746 + 2 NA intron (NM_001369124, intron 8 of 9) MLT1H2|LTR|ERVL-MaLR -106330 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 288-84 chr12 60977912 60978105 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 1214831 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 531-92 chr18 71585821 71586138 + 2 NA Intergenic Intergenic -7023 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 313-443 chr5 106332867 106333141 + 2 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat 678010 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 231-151 chr2 18625597 18625764 + 2 NA Intergenic Intergenic -36100 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 708-34 chr16 72626947 72627502 + 2 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 37746 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 351-200 chr19 44479912 44480136 + 2 NA intron (NM_001278508, intron 2 of 3) intron (NM_001278508, intron 2 of 3) 20498 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 343-77 chr11 58746907 58747079 + 2 NA Intergenic Intergenic -15019 NM_005838 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 463-46 chr10 113349222 113349649 + 2 NA Intergenic AluY|SINE|Alu -201396 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 182-73 chr17 71556668 71556801 + 2 NA Intergenic Intergenic -354555 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 248-298 chr5 12331645 12331843 + 2 NA Intergenic L1MB8|LINE|L1 -243113 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 597-66 chr2 51090002 51090496 + 2 NA intron (NR_135237, intron 2 of 10) LTR33A_|LTR|ERVL 57648 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 359-421 chr6 40741342 40741554 + 2 NA Intergenic Intergenic -154084 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 422-304 chr8 133927875 133928281 + 2 NA Intergenic Intergenic 41582 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 344-191 chr17 72665090 72665281 + 2 NA intron (NM_001352692, intron 7 of 9) MLT1F|LTR|ERVL-MaLR -24713 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 304-3 chr1 37272590 37272835 + 2 NA Intergenic Intergenic 111149 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 337-126 chr12 119135844 119136101 + 2 NA intron (NM_194286, intron 8 of 12) intron (NM_194286, intron 8 of 12) 40512 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 332-388 chr4 134274799 134275124 + 2 NA Intergenic Intergenic -73172 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 408-148 chr19 37360293 37360695 + 2 NA TTS (NM_001353804) TTS (NM_001353804) -10605 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 339-216 chr17 72619634 72619923 + 2 NA intron (NR_033876, intron 2 of 4) intron (NR_033876, intron 2 of 4) 20694 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 363-261 chr20 52870097 52870295 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -102162 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 363-400 chr7 3041542 3041782 + 2 NA intron (NM_001324281, intron 1 of 25) AluSx3|SINE|Alu 2205 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 266-191 chr2 119792452 119792613 + 2 NA intron (NM_002830, intron 1 of 26) intron (NM_002830, intron 1 of 26) 32610 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 215-158 chr2 158380616 158380789 + 2 NA intron (NM_138803, intron 1 of 13) L1M5|LINE|L1 76051 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 599-102 chr4 189343659 189344024 + 2 NA Intergenic Intergenic -315765 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 543-106 chr18 63628381 63628769 + 2 NA Intergenic L1PA3|LINE|L1 15681 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 320-584 chr9 14305776 14306020 + 2 NA 3' UTR (NM_001369481, exon 3 of 3) 3' UTR (NM_001369481, exon 3 of 3) 947 NR_161384 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 453-92 chr17 70137973 70138405 + 2 NA Intergenic Intergenic 31213 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 283-454 chr9 10133450 10133725 + 2 NA intron (NM_002839, intron 3 of 45) (TAATATA)n|Simple_repeat|Simple_repeat 334195 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 327-317 chr22 35250778 35250946 + 2 NA Intergenic Intergenic -6631 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 381-367 chr7 126525355 126525579 + 2 NA intron (NM_001371085, intron 9 of 10) HAL1ME|LINE|L1 532717 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 333-184 chr17 33815332 33815625 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -281718 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 242-99 chr14 27132783 27132970 + 2 NA Intergenic L1ME1|LINE|L1 224234 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 281-213 chr2 80619359 80619526 + 2 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 306063 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 140-39 chr2 84601709 84601804 + 2 NA intron (NM_001370, intron 18 of 76) L1ME1|LINE|L1 85301 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 326-503 chr7 78956416 78956634 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -52463 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 651-31 chr12 124662529 124663122 + 2 NA Intergenic L1MC|LINE|L1 -95213 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 441-282 chrX 6939625 6940013 + 2 NA Intergenic AluJb|SINE|Alu -207471 NM_001320750 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 264-276 chr3 77595662 77595837 + 2 NA intron (NM_001290039, intron 19 of 26) intron (NM_001290039, intron 19 of 26) 453214 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 529-204 chr7 56298332 56298702 + 2 NA Intergenic L2|LINE|L2 149858 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 287-196 chr2 67671368 67671643 + 2 NA Intergenic Intergenic 154057 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 358-401 chr6 54668604 54668788 + 2 NA Intergenic Intergenic -178075 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 442-10 chr1 103802622 103802944 + 2 NA Intergenic Intergenic 52942 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 341-76 chr11 6817748 6817925 + 2 NA Intergenic MER52A|LTR|ERV1 -21928 NM_003696 8590 Hs.652252 NM_003696 ENSG00000184933 OR6A2 I7|OR11-55|OR6A1|OR6A2P olfactory receptor family 6 subfamily A member 2 protein-coding 361-16 chr1 152961791 152962100 + 2 NA Intergenic Intergenic -8703 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 224-248 chr5 43982704 43982915 + 2 NA Intergenic AluSp|SINE|Alu -379579 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 328-503 chr6 62075407 62075585 + 2 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 210729 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 315-175 chr16 76749113 76749350 + 2 NA Intergenic L1M4|LINE|L1 114233 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 339-330 chr21 22465372 22465645 + 2 NA Intergenic L1M2|LINE|L1 366891 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 260-95 chr12 18728625 18728797 + 2 NA intron (NM_001330774, intron 3 of 14) intron (NM_001330774, intron 3 of 14) 8798 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 362-157 chr14 78465238 78465475 + 2 NA intron (NM_004796, intron 1 of 16) L1ME4a|LINE|L1 61637 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 237-46 chr11 13199656 13199824 + 2 NA Intergenic L1PA16|LINE|L1 -76912 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 440-113 chr2 44734168 44734536 + 2 NA intron (NM_024766, intron 7 of 10) L1MEc|LINE|L1 204536 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 301-357 chr5 66469149 66469337 + 2 NA Intergenic MER4-int|LTR|ERV1 42361 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 176-15 chr11 58004957 58005093 + 2 NA Intergenic Intergenic -18856 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 221-128 chr18 68113061 68113233 + 2 NA Intergenic Intergenic -298325 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 396-147 chr19 51661837 51662053 + 2 NA Intergenic Intergenic -15066 NM_001098612 100049587 Hs.707374 NM_001098612 ENSG00000254415 SIGLEC14 - sialic acid binding Ig like lectin 14 protein-coding 337-200 chr17 34475103 34475432 + 2 NA Intergenic Intergenic 104102 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 358-450 chr7 89588056 89588295 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -531225 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 317-135 chr13 112092399 112092625 + 2 NA intron (NR_120392, intron 1 of 3) L1MEc|LINE|L1 -14607 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 704-2 chr1 82021778 82022451 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 219661 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 330-218 chr18 5071623 5071921 + 2 NA Intergenic Intergenic -9410 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 228-177 chr2 134615424 134615547 + 2 NA intron (NM_030923, intron 2 of 7) HSMAR2|DNA|TcMar-Mariner 103515 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 343-506 chr7 46204374 46204660 + 2 NA Intergenic Intergenic -283245 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 334-239 chr19 41079418 41079590 + 2 NA Intergenic AluSp|SINE|Alu -8947 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 299-31 chr1 203730797 203731048 + 2 NA non-coding (NR_046213, exon 1 of 1) non-coding (NR_046213, exon 1 of 1) 345 NR_046213 84719 Hs.661178 NM_032633 LINC00260 C1orf217|NCRNA00260 long intergenic non-protein coding RNA 260 ncRNA 264-369 chr6 127013846 127014038 + 2 NA Intergenic MamRep1527|LTR|LTR -104729 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 479-175 chr4 177013120 177013489 + 2 NA Intergenic L1M2|LINE|L1 137602 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 507-188 chr4 115305686 115306190 + 2 NA Intergenic Intergenic -192318 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 243-357 chr5 62421768 62421949 + 2 NA intron (NM_001134779, intron 1 of 29) intron (NM_001134779, intron 1 of 29) 2974 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 248-355 chr6 99943678 99943853 + 2 NA intron (NM_001040179, intron 3 of 5) intron (NM_001040179, intron 3 of 5) -50273 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 269-220 chr20 11734145 11734305 + 2 NA Intergenic Intergenic 136490 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 257-105 chr14 21185848 21186091 + 2 NA Intergenic L1MC5|LINE|L1 19534 NR_038970 283624 Hs.525210 NR_038970 ENSG00000258441 LINC00641 - long intergenic non-protein coding RNA 641 ncRNA 288-118 chr14 55961374 55961564 + 2 NA Intergenic L1MEf|LINE|L1 -156942 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 263-117 chr15 66285311 66285467 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -7920 NM_001323936 115752 Hs.446251 NM_133375 ENSG00000166938 DIS3L DIS3L1 DIS3 like exosome 3'-5' exoribonuclease protein-coding 393-15 chr1 88417174 88417522 + 2 NA Intergenic L1MB3|LINE|L1 -266796 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 530-284 chrX 65433957 65434304 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -54605 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 217-288 chr5 19946060 19946217 + 2 NA intron (NM_001349562, intron 2 of 13) L1MD2|LINE|L1 42062 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 307-16 chr1 96566313 96566483 + 2 NA Intergenic MIRb|SINE|MIR -155207 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 318-142 chr12 53637617 53637789 + 2 NA Intergenic AluY|SINE|Alu -11288 NM_001206682 11016 Hs.12286 NM_006856 ENSG00000170653 ATF7 ATFA activating transcription factor 7 protein-coding 288-93 chr13 35647238 35647412 + 2 NA intron (NM_001204197, intron 10 of 17) intron (NM_001204197, intron 10 of 17) -50199 NR_132116 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 509-54 chr11 133473864 133474176 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 58481 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 253-267 chr3 112157520 112157723 + 2 NA intron (NM_001320531, intron 25 of 27).2 L1MA4|LINE|L1 24198 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 590-35 chr12 65483620 65484087 + 2 NA intron (NR_120431, intron 3 of 3) MSTA-int|LTR|ERVL-MaLR 73458 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 235-113 chr15 56702159 56702313 + 2 NA intron (NM_001002843, intron 3 of 20) intron (NM_001002843, intron 3 of 20) 31850 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 195-259 chr9 88518786 88518953 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -16232 NM_001161625 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 396-343 chr7 129062377 129062706 + 2 NA Intergenic Intergenic 7318 NR_002187 286016 Hs.369665 NR_002187 ENSG00000230359 TPI1P2 - triosephosphate isomerase 1 pseudogene 2 pseudo 317-33 chr1 214762155 214762449 + 2 NA Intergenic L1PA13|LINE|L1 159107 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 446-292 chr8 3609144 3609454 + 2 NA intron (NM_033225, intron 8 of 69) intron (NM_033225, intron 8 of 69) -880848 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 419-249 chr6 44825036 44825289 + 2 NA intron (NR_146632, intron 11 of 11) intron (NR_146632, intron 11 of 11) -273281 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 367-15 chr1 78169541 78169794 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -59932 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 351-100 chr12 118791248 118791434 + 2 NA Intergenic Intergenic -29662 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 381-124 chr16 59605469 59605789 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 149562 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 357-229 chr2 211027614 211027845 + 2 NA Intergenic Intergenic 410158 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 331-247 chr2 16373574 16373898 + 2 NA Intergenic Intergenic 292098 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 274-5 chr1 68889803 68890050 + 2 NA Intergenic L1ME4a|LINE|L1 -165972 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 202-251 chr8 65435654 65435816 + 2 NA Intergenic L1MEg|LINE|L1 126931 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 285-128 chr14 87217032 87217188 + 2 NA Intergenic AluSz6|SINE|Alu 311332 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 257-447 chrX 26118725 26118914 + 2 NA Intergenic MIRb|SINE|MIR -19524 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 501-229 chr6 112753541 112754027 + 2 NA Intergenic L1MC3|LINE|L1 406454 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 234-401 chr9 81472299 81472504 + 2 NA Intergenic Intergenic 217134 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 124-3 chr1 213345049 213345125 + 2 NA Intergenic HAL1ME|LINE|L1 293846 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 322-233 chr2 17079173 17079358 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -413431 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 746-54 chr4 35775226 35775742 + 2 NA Intergenic Intergenic 468455 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 304-92 chr11 115750692 115750865 + 2 NA Intergenic Intergenic 9422 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 330-285 chr2 116630495 116630730 + 2 NA Intergenic Intergenic -1184079 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 372-474 chr8 47112981 47113227 + 2 NA Intergenic L2|LINE|L2 -76203 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 324-284 chr2 146628739 146628951 + 2 NA Intergenic Intergenic 41788 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 334-497 chr7 48374110 48374292 + 2 NA intron (NM_152701, intron 33 of 61) intron (NM_152701, intron 33 of 61) 202743 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 360-136 chr15 26249568 26249882 + 2 NA Intergenic L1MB3|LINE|L1 133912 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 466-64 chr12 61106848 61107273 + 2 NA Intergenic L2c|LINE|L2 1085779 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 469-18 chr1 174346060 174346421 + 2 NA intron (NM_001366445, intron 11 of 13) L1M1|LINE|L1 71140 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 265-3 chr1 20458786 20459006 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 27314 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 296-319 chr3 181030605 181030799 + 2 NA Intergenic L1M4|LINE|L1 -25978 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 210-198 chr4 68208652 68208824 + 2 NA intron (NR_104048, intron 2 of 9) intron (NR_104048, intron 2 of 9) 9342 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 253-158 chr17 58879167 58879356 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 123392 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 472-212 chr3 141243217 141243531 + 2 NA intron (NM_152282, intron 3 of 7) intron (NM_152282, intron 3 of 7) 11549 NM_152282 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 317-445 chr7 25371059 25371327 + 2 NA Intergenic Intergenic -142707 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 525-290 chrX 100294115 100294580 + 2 NA 3' UTR (NM_001184880, exon 6 of 6) 3' UTR (NM_001184880, exon 6 of 6) 115926 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 340-555 chr8 134356679 134356974 + 2 NA Intergenic Intergenic -241245 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 156-83 chr5 141216545 141216676 + 2 NA 3' UTR (NM_018933, exon 1 of 1) 3' UTR (NM_018933, exon 1 of 1) 2691 NM_018933 56123 Hs.283803 NM_018933 ENSG00000187372 PCDHB13 PCDH-BETA13 protocadherin beta 13 protein-coding 595-153 chr7 55840686 55841110 + 2 NA intron (NM_207366, intron 5 of 9) (TTAT)n|Simple_repeat|Simple_repeat 21854 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 467-141 chr2 143652935 143653289 + 2 NA intron (NM_018460, intron 12 of 13) L1ME1|LINE|L1 -283955 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 358-70 chr11 78290277 78290566 + 2 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 51459 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 441-278 chr9 100791599 100791886 + 2 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 213663 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 303-509 chrX 102785923 102786128 + 2 NA intron (NR_038988, intron 2 of 7) intron (NR_038988, intron 2 of 7) 16872 NR_146593 100287765 Hs.556850 NR_038988 LINC00630 - long intergenic non-protein coding RNA 630 ncRNA 376-41 chr10 39148545 39148770 + 2 NA Intergenic ALR/Alpha|Satellite|centr 452061 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 403-277 chr6 169375136 169375520 + 2 NA Intergenic Intergenic -121214 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 650-45 chr19 37437092 37437505 + 2 NA intron (NM_152484, intron 3 of 5) L1MA3|LINE|L1 30146 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 505-62 chr12 83850402 83850894 + 2 NA Intergenic L1ME3Cz|LINE|L1 1062151 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 221-230 chr5 5709069 5709246 + 2 NA Intergenic L1MA8|LINE|L1 286480 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 305-427 chr5 32497484 32497688 + 2 NA Intergenic MER21A|LTR|ERVL -52846 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 195-166 chr4 64118134 64118289 + 2 NA Intergenic L1PA13|LINE|L1 291239 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 250-78 chr11 112051145 112051370 + 2 NA exon (NM_001931, exon 11 of 14) exon (NM_001931, exon 11 of 14) 22914 NM_138789 120379 Hs.420662 NM_138789 ENSG00000150773 PIH1D2 - PIH1 domain containing 2 protein-coding 312-294 chr20 48228385 48228679 + 2 NA Intergenic MIR|SINE|MIR -131379 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 399-8 chr1 112067504 112067719 + 2 NA Intergenic Intergenic 77075 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 312-129 chr13 90662452 90662622 + 2 NA Intergenic Intergenic 169249 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 459-135 chr2 51241151 51241477 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 208713 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 279-88 chr13 25548279 25548485 + 2 NA intron (NM_016529, intron 10 of 36) intron (NM_016529, intron 10 of 36) 79608 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 332-327 chr3 69495768 69495960 + 2 NA Intergenic Intergenic -109776 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 378-188 chr18 7583741 7584101 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 16605 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 301-309 chr4 42268289 42268540 + 2 NA Intergenic MIRc|SINE|MIR -115759 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 425-154 chr2 168501601 168501946 + 2 NA intron (NM_001256126, intron 1 of 10) PRIMA4-int|LTR|ERV1 45501 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 324-489 chr7 39901713 39901905 + 2 NA Intergenic AluJr|SINE|Alu 47610 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 405-107 chr17 27322153 27322469 + 2 NA Intergenic Intergenic 28197 NM_134265 26118 Hs.446017 NM_015626 ENSG00000109046 WSB1 SWIP1|WSB-1 WD repeat and SOCS box containing 1 protein-coding 340-158 chr14 82056728 82056932 + 2 NA Intergenic MLT2B3|LTR|ERVL -313692 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 625-127 chr9 71858936 71859387 + 2 NA Intergenic Intergenic 52084 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 316-301 chr2 197012613 197012810 + 2 NA intron (NM_001367496, intron 18 of 27) intron (NM_001367496, intron 18 of 27) -86004 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 379-189 chr20 39696328 39696656 + 2 NA Intergenic L1MA10|LINE|L1 -307969 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 699-69 chr22 45852025 45852533 + 2 NA Intergenic Intergenic 91755 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 414-309 chr7 67514432 67514811 + 2 NA Intergenic AluSx1|SINE|Alu 178645 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 415-106 chr18 13737978 13738333 + 2 NA intron (NM_003799, intron 5 of 11) Charlie1a|DNA|hAT-Charlie 11482 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 567-146 chr5 54251456 54251931 + 2 NA intron (NM_019087, intron 1 of 4) MER5A|DNA|hAT-Charlie 58880 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 249-397 chr7 131996084 131996298 + 2 NA Intergenic Intergenic 85971 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 372-366 chr4 75056838 75057047 + 2 NA Intergenic MIR|SINE|MIR 27766 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 441-90 chr15 99942755 99943065 + 2 NA Intergenic L1MA9|LINE|L1 135887 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 577-109 chr21 34248751 34249160 + 2 NA Intergenic L2a|LINE|L2 68278 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 492-176 chr3 96713365 96713791 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -101016 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 249-324 chr5 22285725 22285894 + 2 NA intron (NM_001364104, intron 2 of 13) L2a|LINE|L2 -71959 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 331-274 chr2 100452680 100452960 + 2 NA Intergenic MER4A1|LTR|ERV1 -17662 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 353-107 chr12 33816615 33816926 + 2 NA Intergenic L1P3|LINE|L1 -205726 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 427-183 chr4 64183615 64183850 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 225718 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 255-58 chr11 43782585 43782787 + 2 NA intron (NM_016142, intron 3 of 10) AluSx|SINE|Alu -98145 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 462-287 chr8 116981759 116982142 + 2 NA intron (NM_001172811, intron 2 of 9) L1PA15|LINE|L1 30975 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 241-281 chr4 144689518 144689688 + 2 NA intron (NM_022475, intron 4 of 12) intron (NM_022475, intron 4 of 12) 43447 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 266-6 chr1 57270964 57271160 + 2 NA intron (NM_001353980, intron 5 of 5) intron (NM_001353980, intron 5 of 5) 152050 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 280-281 chr4 38713347 38713542 + 2 NA Intergenic L1ME1|LINE|L1 -48816 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 308-45 chr10 6861976 6862206 + 2 NA Intergenic L1MC3|LINE|L1 82493 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 289-60 chr10 66426357 66426545 + 2 NA intron (NM_001127384, intron 11 of 17) L1MEd|LINE|L1 -499585 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 325-23 chr1 152145715 152145982 + 2 NA Intergenic Intergenic 13380 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 468-168 chr2 176225263 176225619 + 2 NA Intergenic Intergenic -36483 NR_033979 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|MIR7704HG|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 404-104 chr14 72279079 72279388 + 2 NA intron (NM_001370288, intron 2 of 16) MLT2F|LTR|ERVL -237587 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 476-227 chr5 102516961 102517399 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -18179 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 193-138 chr3 33457139 33457270 + 2 NA Intergenic AluSp|SINE|Alu -16799 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 260-424 chr8 35093609 35093851 + 2 NA Intergenic MIR|SINE|MIR -141745 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 267-13 chr1 88258489 88258660 + 2 NA Intergenic Intergenic -425570 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 249-12 chr1 76672952 76673155 + 2 NA Intergenic MamRep1151|LTR?|LTR? 106214 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 322-335 chr3 97732250 97732538 + 2 NA intron (NM_001080448, intron 15 of 17) L2b|LINE|L2 -32127 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 125-72 chrX 38299219 38299312 + 2 NA intron (NM_001034853, intron 9 of 14) intron (NM_001034853, intron 9 of 14) 27687 NR_159808 6103 Hs.61438 NM_000328 ENSG00000156313 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 717-13 chr10 42679284 42679662 + 2 NA intron (NR_120659, intron 4 of 4) intron (NR_120659, intron 4 of 4) 12286 NR_120658 101929397 Hs.729796 NR_120656 LINC01518 - long intergenic non-protein coding RNA 1518 ncRNA 236-388 chr9 112650372 112650547 + 2 NA intron (NM_001287038, intron 3 of 3) L1MEc|LINE|L1 67658 NR_138055 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 214-262 chr5 60577880 60578057 + 2 NA Intergenic Intergenic -81682 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 397-230 chr4 99012929 99013235 + 2 NA intron (NM_015143, intron 1 of 10) L1M3|LINE|L1 15695 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 366-469 chr9 96691473 96691754 + 2 NA Intergenic Intergenic -34208 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 389-356 chr8 35840886 35841167 + 2 NA Intergenic Intergenic -130706 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 275-106 chr14 41738820 41738997 + 2 NA intron (NM_001346173, intron 1 of 4) L1MA7|LINE|L1 132052 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 193-73 chr16 26071570 26071699 + 2 NA intron (NM_006040, intron 1 of 1) MamRep4096|DNA|hAT-Tip100 46397 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 1017-13 chr20 21844283 21845120 + 2 NA Intergenic L1MB3|LINE|L1 139037 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 366-118 chr13 93135352 93135592 + 2 NA Intergenic Intergenic 90131 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 132-38 chr18 70125432 70125532 + 2 NA intron (NM_001318520, intron 24 of 47) MARNA|DNA|TcMar-Mariner 80205 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 286-407 chr7 26986811 26987053 + 2 NA Intergenic L1MC5a|LINE|L1 109068 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 388 chr1 2980165 2980490 + 2 NA Intergenic Intergenic -41140 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 523-256 chr7 90496251 90496626 + 2 NA intron (NM_001365443, intron 6 of 6) L1M2|LINE|L1 26799 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 430-321 chr8 129874893 129875214 + 2 NA intron (NM_001353287, intron 6 of 14) L2a|LINE|L2 64758 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 328-200 chr16 86939693 86939914 + 2 NA Intergenic L1MB5|LINE|L1 -117981 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 156-45 chr17 77577956 77578040 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 31057 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 230-321 chr6 44986797 44986982 + 2 NA intron (NM_181356, intron 8 of 12) L2a|LINE|L2 210881 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 310-369 chr4 68211860 68212105 + 2 NA intron (NR_104048, intron 2 of 9) HAL1b|LINE|L1 6098 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 305-220 chr18 67568854 67569063 + 2 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -52238 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 371-123 chr16 3383050 3383323 + 2 NA exon (NM_001324341, exon 6 of 6) exon (NM_001324341, exon 6 of 6) -10518 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 446-65 chr11 74298547 74298924 + 2 NA intron (NR_110031, intron 3 of 11) L2c|LINE|L2 -12627 NR_120556 101928580 Hs.569025 NR_120556 ENSG00000246211 P4HA3-AS1 - P4HA3 antisense RNA 1 ncRNA 318-344 chr3 8097090 8097283 + 2 NA Intergenic Intergenic -80879 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 326-38 chr1 182055634 182055915 + 2 NA 3' UTR (NM_001009992, exon 2 of 2) 3' UTR (NM_001009992, exon 2 of 2) 5938 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 248-182 chr2 63274882 63275034 + 2 NA intron (NR_148704, intron 14 of 18) L1M2|LINE|L1 -155416 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 305-72 chr10 82291153 82291397 + 2 NA intron (NM_001370082, intron 3 of 10) L1MD1|LINE|L1 -58355 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 351-51 chr10 116130436 116130753 + 2 NA intron (NM_145793, intron 3 of 8) L1ME2z|LINE|L1 64195 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 649-43 chr2 5324297 5324759 + 2 NA Intergenic MIRb|SINE|MIR 366590 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 286-114 chr14 44274345 44274622 + 2 NA Intergenic MIR|SINE|MIR 232800 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 169-50 chr18 380711 380850 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -112733 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 516-167 chr3 24371255 24371621 + 2 NA intron (NM_001354709, intron 1 of 10) intron (NM_001354709, intron 1 of 10) -122649 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 526-128 chr2 98438509 98438990 + 2 NA Intergenic L1M4|LINE|L1 -5838 NM_001351424 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 214-17 chr1 97670431 97670602 + 2 NA intron (NM_000110, intron 8 of 22) MLT1A|LTR|ERVL-MaLR -126405 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 275-182 chr2 41795035 41795283 + 2 NA Intergenic Intergenic -82396 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 636-102 chr3 167101810 167102369 + 2 NA Intergenic HERVL40-int|LTR|ERVL 203406 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 338-60 chr10 56372503 56372742 + 2 NA Intergenic Intergenic -11349 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 297-30 chr1 210397175 210397340 + 2 NA intron (NM_001170564, intron 4 of 9).2 intron (NM_001170564, intron 4 of 9).2 67891 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 299-170 chr17 52811395 52811646 + 2 NA Intergenic Intergenic -50601 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 455-231 chr5 104012384 104012698 + 2 NA Intergenic AluY|SINE|Alu -449752 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 459-105 chr17 5938144 5938527 + 2 NA Intergenic Intergenic -132279 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 207-178 chr22 34865213 34865399 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 132610 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 332-380 chr4 64955613 64955824 + 2 NA intron (NR_033976, intron 2 of 6) MER61-int|LTR|ERV1 48782 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 500-99 chr15 67478306 67478681 + 2 NA intron (NM_001284348, intron 15 of 16) intron (NM_001284348, intron 15 of 16) 42480 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 334-349 chr3 74898072 74898245 + 2 NA Intergenic Intergenic -316318 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 430-312 chr8 104269833 104270106 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 46634 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 506-257 chr6 149377675 149378015 + 2 NA intron (NM_001292034, intron 2 of 6) intron (NM_001292034, intron 2 of 6) -22417 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 261-58 chr11 20181770 20181961 + 2 NA Intergenic L1ME2|LINE|L1 -21390 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 426-90 chr16 6325532 6325839 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 305982 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 335-270 chr2 162696215 162696468 + 2 NA intron (NM_033272, intron 2 of 15) HAL1M8|LINE|L1 -72595 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 223-64 chr12 33487625 33487841 + 2 NA Intergenic L1M5|LINE|L1 -47914 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 218-301 chr7 33144106 33144277 + 2 NA intron (NM_001348044, intron 1 of 18) MIR|SINE|MIR 14627 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 347-332 chr4 29903781 29903968 + 2 NA Intergenic Intergenic 689582 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 509-215 chr6 53216899 53217263 + 2 NA Intergenic Intergenic -59912 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 291-161 chr16 63713191 63713415 + 2 NA Intergenic LTR24|LTR|ERV1 1408760 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 275-263 chr4 56619315 56619546 + 2 NA Intergenic L1MB1|LINE|L1 37092 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 414-110 chr16 73785095 73785397 + 2 NA Intergenic HAL1|LINE|L1 398441 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 186-161 chr8 87593817 87593967 + 2 NA Intergenic L1MC1|LINE|L1 280123 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 305-274 chr2 147477139 147477306 + 2 NA Intergenic ORSL-2a|DNA|hAT-Tip100 -367295 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 441-199 chr5 36479610 36479929 + 2 NA Intergenic L1MC5a|LINE|L1 -126586 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 402-15 chr1 197877143 197877460 + 2 NA Intergenic L1MB3|LINE|L1 -25329 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 336-567 chr8 137516781 137517077 + 2 NA Intergenic Intergenic -103341 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 392-201 chr3 70368844 70369174 + 2 NA Intergenic L1MC3|LINE|L1 -56371 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 369-176 chr19 34847162 34847405 + 2 NA Intergenic L2a|LINE|L2 -14414 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 226-218 chr3 31589094 31589256 + 2 NA intron (NM_178862, intron 3 of 15) L1M4a1|LINE|L1 56250 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 509-171 chr4 38392003 38392361 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 25268 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 155-59 chr20 45160173 45160312 + 2 NA Intergenic L1M3de|LINE|L1 -14660 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 199-88 chr18 11224530 11224717 + 2 NA Intergenic Intergenic -75861 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 401-9 chr1 106916571 106916855 + 2 NA Intergenic Intergenic 98474 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 572-100 chr2 238919898 238920382 + 2 NA intron (NR_034162, intron 8 of 9) intron (NR_034162, intron 8 of 9) 6129 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 238-44 chr10 63992607 63992778 + 2 NA Intergenic L1ME2z|LINE|L1 -470802 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 718-16 chr11 81675527 81676059 + 2 NA Intergenic L1PB4|LINE|L1 215043 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 167-87 chr5 24411090 24411189 + 2 NA Intergenic Intergenic 233839 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 204-249 chr6 49152256 49152399 + 2 NA Intergenic LTR52|LTR|ERVL 310926 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 302-164 chr17 31337231 31337451 + 2 NA intron (NM_001042492, intron 42 of 57) intron (NM_001042492, intron 42 of 57) -15719 NM_001003927 2123 Hs.591198 NM_014210 ENSG00000126860 EVI2A EVDA|EVI-2A|EVI2 ecotropic viral integration site 2A protein-coding 338-111 chr11 111034736 111034921 + 2 NA Intergenic L1MB1|LINE|L1 62490 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 403-292 chr7 103832463 103832838 + 2 NA intron (NM_005045, intron 3 of 64) L4_A_Mam|LINE|RTE-X 156866 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 226-51 chr10 130688557 130688694 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 274043 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 521-206 chr5 161270291 161270711 + 2 NA Intergenic Intergenic 277623 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 195-24 chr10 55478151 55478305 + 2 NA intron (NM_001354404, intron 2 of 34) L1MEf|LINE|L1 -120814 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 203-195 chr5 173419401 173419597 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 72044 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 375-236 chr20 11099717 11100022 + 2 NA Intergenic Intergenic 73325 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 396-225 chr3 104601533 104601883 + 2 NA Intergenic Intergenic -765005 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 478-111 chr16 82892664 82892993 + 2 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 97470 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 283-348 chr5 16050460 16050661 + 2 NA Intergenic MER57E1|LTR|ERV1 115378 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 397-187 chr20 52680699 52680959 + 2 NA Intergenic MER113|DNA|hAT-Charlie 59991 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 347-246 chr2 149710279 149710548 + 2 NA intron (NR_110240, intron 1 of 2) MIR3|SINE|MIR -122638 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 489-243 chr7 83907339 83907762 + 2 NA Intergenic Intergenic -258411 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 314-589 chr8 130668939 130669202 + 2 NA Intergenic Intergenic -225396 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 184-127 chr4 122492544 122492676 + 2 NA Intergenic Intergenic -36115 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 178-61 chr2 24575215 24575372 + 2 NA intron (NM_001362955, intron 3 of 23) L1MEc|LINE|L1 -9184 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 628-47 chr14 78778338 78778707 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 374803 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 218-213 chr3 69372817 69372997 + 2 NA intron (NM_015123, intron 1 of 22) MIR|SINE|MIR 13181 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 288-445 chr8 105043150 105043387 + 2 NA Intergenic L1ME1|LINE|L1 -275170 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 473-67 chr12 118949247 118949576 + 2 NA Intergenic MIRb|SINE|MIR -32130 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 518-231 chr5 58172928 58173292 + 2 NA Intergenic Intergenic -50769 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 297-429 chr7 31334943 31335143 + 2 NA Intergenic Intergenic 5683 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 291-365 chr5 118032973 118033209 + 2 NA intron (NR_104997, intron 2 of 2) AluY|SINE|Alu -249483 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 276-178 chr16 12939481 12939637 + 2 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 37961 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 225-194 chr3 2466586 2466797 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 227862 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 232-299 chr5 40956094 40956299 + 2 NA intron (NM_000587, intron 10 of 17) Tigger9b|DNA|TcMar-Tigger 46699 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 276-138 chr14 30821069 30821319 + 2 NA Intergenic L2c|LINE|L2 -53341 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 616-79 chr2 51750063 51750604 + 2 NA intron (NR_135237, intron 5 of 10) L1MEd|LINE|L1 -620315 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 357-237 chr20 23552981 23553303 + 2 NA Intergenic L1MB2|LINE|L1 15342 NM_080610 128821 Hs.121554 NM_080610 ENSG00000101435 CST9L CTES7B|bA218C14.1 cystatin 9 like protein-coding 294-55 chr11 28601951 28602109 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -124482 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 1071-24 chr7 49264302 49265027 + 2 NA Intergenic Intergenic 340117 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 589-168 chr9 102972011 102972441 + 2 NA Intergenic Intergenic -23107 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 209-158 chr2 117263069 117263240 + 2 NA Intergenic L1M4c|LINE|L1 -551537 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 452-29 chr10 48284869 48285215 + 2 NA Intergenic L2a|LINE|L2 -10346 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 346-534 chr9 116024889 116025156 + 2 NA Intergenic L1PA15|LINE|L1 -99815 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 223-226 chr3 134402442 134402600 + 2 NA Intergenic Intergenic -27104 NM_001278683 51421 Hs.426312 NM_016201 ENSG00000114019 AMOTL2 LCCP angiomotin like 2 protein-coding 209-41 chr10 69789157 69789284 + 2 NA Intergenic Intergenic -12686 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 342-344 chr3 187795659 187795963 + 2 NA Intergenic Intergenic -50343 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 270-347 chr7 3885256 3885519 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -244298 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 383-403 chr8 138115151 138115378 + 2 NA Intergenic L2a|LINE|L2 -31719 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 335-47 chr10 39083573 39083773 + 2 NA Intergenic ALR/Alpha|Satellite|centr 387077 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 398-280 chr5 130922721 130923069 + 2 NA Intergenic HAL1|LINE|L1 242361 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 225-334 chr7 88893060 88893211 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -97398 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 136-89 chr8 123343250 123343333 + 2 NA intron (NM_014109, intron 19 of 27) L2a|LINE|L2 -4743 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 156-101 chr7 114346366 114346497 + 2 NA intron (NR_033766, intron 2 of 19) L1MA6|LINE|L1 -68384 NR_033767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 510-20 chr1 210574257 210574660 + 2 NA intron (NM_001122834, intron 9 of 11) intron (NM_001122834, intron 9 of 11) 245092 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 429-181 chr20 61695076 61695454 + 2 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 24483 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 218-200 chr21 43596114 43596298 + 2 NA intron (NM_007031, intron 7 of 8) L1MEd|LINE|L1 13783 NR_106718 102464825 NR_106718 ENSG00000278433 MIR6070 hsa-mir-6070 microRNA 6070 ncRNA 355-475 chr7 88883778 88884097 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -88200 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 610-165 chr7 106709099 106709467 + 2 NA Intergenic Intergenic -48125 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 315-241 chr2 81170995 81171200 + 2 NA Intergenic L1ME3C|LINE|L1 295849 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 319-461 chr6 68858513 68858792 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 223370 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 337-157 chr14 71888679 71888875 + 2 NA Intergenic Intergenic -43394 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 514-204 chr4 96115312 96115649 + 2 NA Intergenic Intergenic -195223 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 346-445 chr6 148999068 148999350 + 2 NA intron (NM_005715, intron 5 of 7) intron (NM_005715, intron 5 of 7) 33452 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 285-418 chr8 103446785 103447035 + 2 NA Intergenic MIR|SINE|MIR 31524 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 229-2 chr1 32005350 32005566 + 2 NA Intergenic L2a|LINE|L2 -8410 NR_073499 10657 Hs.445893 NM_006559 ENSG00000121774 KHDRBS1 Sam68|p62|p68 KH RNA binding domain containing, signal transduction associated 1 protein-coding 178-119 chr6 49011927 49012068 + 2 NA Intergenic Intergenic 451256 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 248-234 chr22 33532603 33532815 + 2 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -96040 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 544-131 chr2 186134316 186134845 + 2 NA Intergenic Intergenic -48263 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 343-67 chr11 3360356 3360543 + 2 NA exon (NM_001130520, exon 6 of 6) exon (NM_001130520, exon 6 of 6) 18697 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 302-410 chr7 36622068 36622312 + 2 NA intron (NM_001177507, intron 6 of 19) (GT)n|Simple_repeat|Simple_repeat -22070 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 256-131 chr14 85645600 85645817 + 2 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 112359 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 368-441 chr8 19740253 19740476 + 2 NA intron (NM_001354488, intron 1 of 9) LTR78|LTR|ERV1 16719 NM_001354490 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 222-282 chr5 7993658 7993832 + 2 NA Intergenic Intergenic 124597 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 267-352 chr5 141527457 141527669 + 2 NA intron (NM_005219, intron 24 of 27) intron (NM_005219, intron 24 of 27) -30748 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 245-379 chrX 145852543 145852680 + 2 NA Intergenic Intergenic 31263 NM_001144008 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 269-378 chr7 29290006 29290240 + 2 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -81153 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 504-8 chr1 104813120 104813494 + 2 NA Intergenic L1PB4|LINE|L1 740284 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 677-30 chr14 67108030 67108527 + 2 NA intron (NM_001024218, intron 12 of 21) LTR33|LTR|ERVL -81162 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 379-258 chr5 19053000 19053339 + 2 NA Intergenic L1PA3|LINE|L1 833103 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 461-47 chr11 37170076 37170453 + 2 NA Intergenic L2c|LINE|L2 -571985 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 303-62 chr11 10044551 10044765 + 2 NA intron (NM_030962, intron 2 of 39) LTR10G|LTR|ERV1 205516 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 524-220 chr6 45242654 45243070 + 2 NA intron (NM_001350325, intron 2 of 10) L1M4a2|LINE|L1 -45092 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 390-423 chr9 103712569 103712799 + 2 NA Intergenic L1PA16|LINE|L1 -287025 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 234-251 chr3 112756858 112757019 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -7619 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 234-33 chr10 28927946 28928104 + 2 NA Intergenic Intergenic 81617 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 445-182 chr3 163073396 163073744 + 2 NA Intergenic MER52A|LTR|ERV1 229731 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 437-76 chr14 58707992 58708389 + 2 NA Intergenic Intergenic 69353 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 222-30 chr10 25409945 25410093 + 2 NA intron (NM_020752, intron 3 of 10) intron (NM_020752, intron 3 of 10) -233743 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 166-6 chr10 46516754 46516884 + 2 NA Intergenic L2c|LINE|L2 39252 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 433-244 chr6 64863897 64864204 + 2 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -437368 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 262-362 chr6 39398917 39399164 + 2 NA intron (NM_001289024, intron 2 of 9) MLT2D|LTR|ERVL 32350 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 279-401 chr7 113875586 113875777 + 2 NA Intergenic Intergenic 43328 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 400-375 chrX 77957723 77958115 + 2 NA intron (NM_001282224, intron 1 of 21) MSTB|LTR|ERVL-MaLR 11719 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 391-197 chr2 230689876 230690210 + 2 NA TTS (NR_040038) TTS (NR_040038) 10486 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 293-408 chr7 56234900 56235077 + 2 NA Intergenic AluSq|SINE|Alu -118571 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 646-128 chr8 106121389 106121925 + 2 NA Intergenic AluYb8|SINE|Alu -61154 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 586-25 chr10 129171151 129171572 + 2 NA Intergenic Intergenic 258528 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 344-307 chr3 36252419 36252700 + 2 NA Intergenic L1PA10|LINE|L1 -127928 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 191-62 chr15 94269320 94269494 + 2 NA Intergenic Intergenic -28794 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 546-135 chr21 44693853 44694205 + 2 NA intron (NM_001272037, intron 1 of 12) L1M4|LINE|L1 -3143 NM_198699 386685 Hs.297526 NM_198699 ENSG00000189169 KRTAP10-12 KAP10.12|KRTAP18-12|KRTAP18.12 keratin associated protein 10-12 protein-coding 229-24 chr10 10375167 10375345 + 2 NA Intergenic Intergenic 87093 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 293-309 chr4 91104931 91105103 + 2 NA intron (NM_001145065, intron 10 of 10) L1PB4|LINE|L1 869986 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 286-33 chr10 18811428 18811637 + 2 NA Intergenic Intergenic 152101 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 228-49 chr11 9049017 9049188 + 2 NA intron (NM_001367977, intron 14 of 22) L1MD3|LINE|L1 41277 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 276-371 chr5 63571471 63571663 + 2 NA Intergenic L1MEc|LINE|L1 390725 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 405-262 chr5 149709128 149709453 + 2 NA Intergenic Intergenic -21020 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 505-97 chr15 46031907 46032368 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 326942 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 325-111 chr11 111021720 111021965 + 2 NA Intergenic Intergenic 75476 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 316-468 chr5 160650923 160651112 + 2 NA intron (NM_001366652, intron 6 of 24) intron (NM_001366652, intron 6 of 24) 34374 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 250-365 chr5 159014547 159014759 + 2 NA intron (NM_182708, intron 5 of 14) MLT1J|LTR|ERVL-MaLR 83303 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 232-118 chr16 12311707 12311899 + 2 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 335069 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 379-119 chr17 60917226 60917530 + 2 NA intron (NM_001330413, intron 12 of 25) L1MB4|LINE|L1 239527 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 211-107 chr17 3117477 3117652 + 2 NA TTS (NM_001348201) TTS (NM_001348201) 971 NM_001348201 8389 NM_001348201 OR1E3 OR17-210|OR1E3P olfactory receptor family 1 subfamily E member 3 (gene/pseudogene) protein-coding 500-124 chr2 22684037 22684480 + 2 NA Intergenic Intergenic 147779 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 381-225 chr20 13357597 13357869 + 2 NA Intergenic L1ME2|LINE|L1 -118046 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 491-252 chr8 33611798 33612200 + 2 NA Intergenic Intergenic -11893 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 251-218 chr22 22999405 22999553 + 2 NA Intergenic L1M2|LINE|L1 -71040 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 599-81 chr3 59625689 59626031 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 32637 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 344-43 chr10 29340384 29340643 + 2 NA Intergenic Intergenic 51443 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 639-51 chr17 55379132 55379533 + 2 NA Intergenic MIRc|SINE|MIR 42503 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 521-108 chr18 73798269 73798742 + 2 NA Intergenic Intergenic 349329 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 429-48 chr11 21410907 21411258 + 2 NA intron (NM_201551, intron 15 of 18) MIRb|SINE|MIR 741496 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 531-151 chr3 51259549 51260029 + 2 NA intron (NM_004947, intron 22 of 52) intron (NM_004947, intron 22 of 52) -125502 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 169-10 chr10 43517905 43518070 + 2 NA Intergenic LTR53-int|LTR|ERVL 50472 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 383-189 chr2 74842458 74842764 + 2 NA intron (NM_000189, intron 1 of 17) intron (NM_000189, intron 1 of 17) 9956 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 369-264 chr3 41780816 41781031 + 2 NA intron (NR_136342, intron 20 of 34) LTR87|LTR|ERVL? 181180 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 214-290 chr6 167064270 167064422 + 2 NA Intergenic HERVL-int|LTR|ERVL -47461 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 524-110 chr2 49321413 49321708 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -167033 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 301-301 chr3 193546441 193546652 + 2 NA intron (NM_032279, intron 1 of 29) MIRb|SINE|MIR -6667 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 522-24 chr10 78165430 78165823 + 2 NA Intergenic Intergenic -82999 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 239-83 chr12 133173280 133173456 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -8127 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 464-35 chr11 57395291 57395589 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -4790 NM_001243245 5553 Hs.512633 NM_002728 ENSG00000186652 PRG2 BMPG|MBP|MBP1|proMBP proteoglycan 2, pro eosinophil major basic protein protein-coding 420-72 chr13 79583356 79583605 + 2 NA Intergenic Intergenic 16753 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 277-399 chr8 29561752 29561947 + 2 NA Intergenic Intergenic 186260 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 230-206 chr20 39769573 39769769 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -234790 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 632-117 chr8 84304485 84304988 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -110748 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 340-404 chr4 80279230 80279450 + 2 NA intron (NM_004464, intron 2 of 2) intron (NM_004464, intron 2 of 2) 11075 NM_001291812 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 430-196 chr3 97152563 97152802 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -286925 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 115-35 chr5 11991705 11991784 + 2 NA Intergenic Intergenic -87298 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 391-338 chr8 42225665 42226010 + 2 NA Intergenic Intergenic -18272 NM_000930 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 245-145 chr15 86361201 86361392 + 2 NA intron (NM_152336, intron 17 of 24) L1MA9|LINE|L1 -44328 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 465-59 chr12 32248918 32249168 + 2 NA intron (NR_148725, intron 2 of 9) MER61D|LTR|ERV1 142196 NM_001354189 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 634-41 chr12 33827177 33827633 + 2 NA Intergenic L1ME1|LINE|L1 -195091 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 348-347 chr4 34406946 34407225 + 2 NA Intergenic Intergenic -137338 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 239-345 chr6 36857072 36857226 + 2 NA intron (NM_016059, intron 2 of 3) MER117|DNA|hAT-Charlie -14695 NM_001286636 221477 Hs.433381 NM_152734 ENSG00000198663 C6orf89 BRAP|PS1TP5TP1 chromosome 6 open reading frame 89 protein-coding 265-341 chr6 105893369 105893596 + 2 NA Intergenic Intergenic -192854 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 964-9 chr16 51646931 51647671 + 2 NA Intergenic Intergenic -115218 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 299-388 chr5 178595413 178595669 + 2 NA Intergenic L1MEc|LINE|L1 -5148 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 397-84 chr14 48979266 48979472 + 2 NA Intergenic L2a|LINE|L2 607011 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 605-38 chr17 12808546 12809098 + 2 NA intron (NM_001321164, intron 1 of 20) THE1B-int|LTR|ERVL-MaLR -18538 NR_104607 100128006 Hs.567641 NR_104607 ENSG00000265489 LOC100128006 - uncharacterized LOC100128006 ncRNA 246-197 chr2 104199547 104199724 + 2 NA Intergenic Intergenic 208697 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 329-279 chr2 88258165 88258459 + 2 NA Intergenic Intergenic 85173 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 245-356 chr8 126151624 126151843 + 2 NA Intergenic L1PA16|LINE|L1 -173762 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 545-228 chr7 157108036 157108427 + 2 NA Intergenic Intergenic -30695 NM_014671 9690 Hs.118351 NM_014671 ENSG00000009335 UBE3C HECTH2 ubiquitin protein ligase E3C protein-coding 327-202 chr17 73685343 73685656 + 2 NA Intergenic L2a|LINE|L2 -41054 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 357-26 chr10 9907156 9907409 + 2 NA Intergenic Intergenic -151440 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 347-331 chr4 16889721 16889957 + 2 NA intron (NR_130734, intron 2 of 6) L2a|LINE|L2 8806 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 432-97 chr16 72335124 72335440 + 2 NA intron (NR_126330, intron 9 of 13) L1M5|LINE|L1 -162832 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 609-39 chr17 5904483 5904906 + 2 NA intron (NR_040000, intron 3 of 3) L1MEf|LINE|L1 132460 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 336-601 chrX 87776369 87776545 + 2 NA Intergenic Intergenic 258655 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 215-262 chr5 87338049 87338239 + 2 NA intron (NM_022650, intron 5 of 24) intron (NM_022650, intron 5 of 24) -14516 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 298-438 chr7 82860831 82861103 + 2 NA intron (NM_033026, intron 10 of 24) L1MA1|LINE|L1 301917 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 775-35 chr16 62585889 62586530 + 2 NA Intergenic Intergenic -549771 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 491-95 chr18 6037552 6038002 + 2 NA intron (NM_001365767, intron 16 of 16) intron (NM_001365767, intron 16 of 16) -141823 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 367-334 chr4 128772274 128772486 + 2 NA Intergenic Intergenic -37320 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 557-167 chr6 38006189 38006610 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 186672 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 360-181 chr18 51504937 51505150 + 2 NA intron (NR_040074, intron 1 of 2) L2b|LINE|L2 113001 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 120-51 chr8 107718270 107718362 + 2 NA Intergenic Intergenic -220398 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 240-147 chr15 27161768 27161929 + 2 NA promoter-TSS (NR_120343) promoter-TSS (NR_120343) -529 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 460-145 chr2 102654780 102655164 + 2 NA intron (NM_003048, intron 1 of 11) Tigger3|DNA|TcMar-Tigger 35419 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 566-4 chr1 81887054 81887557 + 2 NA intron (NM_001366002, intron 3 of 20) intron (NM_001366002, intron 3 of 20) 84852 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 236-140 chr17 17966630 17966804 + 2 NA intron (NM_001288787, intron 1 of 13) MIRb|SINE|MIR 5683 NM_001350331 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 251-370 chr7 53715022 53715234 + 2 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 96803 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 213-8 chr1 80687801 80687968 + 2 NA Intergenic Intergenic 46597 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 313-225 chr19 57607137 57607294 + 2 NA exon (NM_001321981, exon 4 of 4) exon (NM_001321981, exon 4 of 4) -7027 NM_003435 7693 Hs.469694 NM_003435 ENSG00000213762 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 217-129 chr15 95182994 95183176 + 2 NA Intergenic Intergenic 144015 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 246 chr1 30203391 30203578 + 2 NA Intergenic L1M5|LINE|L1 -165872 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 265-212 chr20 7762020 7762251 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 178323 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 337-517 chr7 41176366 41176658 + 2 NA Intergenic MIR3|SINE|MIR 74908 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 271-477 chr9 74319993 74320143 + 2 NA Intergenic Intergenic -51463 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 256-380 chr7 13073779 13073967 + 2 NA Intergenic L1MEf|LINE|L1 386240 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 413-232 chr5 24707998 24708295 + 2 NA Intergenic Intergenic -63168 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 182-71 chr17 59371924 59372090 + 2 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) 5924 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 255-224 chr2 210936776 210936961 + 2 NA Intergenic Intergenic 319297 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 350-193 chr18 56032082 56032392 + 2 NA intron (NR_148972, intron 6 of 8) intron (NR_148972, intron 6 of 8) -10041 NR_146511 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 266-344 chr5 139422326 139422495 + 2 NA intron (NM_152686, intron 6 of 7) intron (NM_152686, intron 6 of 7) 17115 NM_152686 202052 Hs.483537 NM_152686 ENSG00000170464 DNAJC18 - DnaJ heat shock protein family (Hsp40) member C18 protein-coding 455-29 chr10 78794216 78794596 + 2 NA Intergenic Intergenic 273042 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 157-59 chr2 54943682 54943834 + 2 NA intron (NM_001039753, intron 27 of 40) MER33|DNA|hAT-Charlie 66514 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 433-11 chr1 190174754 190175020 + 2 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 301123 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 288-400 chr7 40078686 40078843 + 2 NA exon (NM_031267, exon 11 of 14) exon (NM_031267, exon 11 of 14) 55858 NM_138701 136647 Hs.654989 NM_138701 ENSG00000168303 MPLKIP ABHS|C7orf11|ORF20|TTD4 M-phase specific PLK1 interacting protein protein-coding 515-82 chr16 64385048 64385534 + 2 NA Intergenic Intergenic 736772 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 368-343 chr4 175089872 175090078 + 2 NA Intergenic Intergenic 171617 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 379-155 chr2 36704720 36705019 + 2 NA intron (NM_001177969, intron 1 of 14) intron (NM_001177969, intron 1 of 14) 8162 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 192-45 chr12 5803039 5803218 + 2 NA intron (NM_001278596, intron 9 of 25) intron (NM_001278596, intron 9 of 25) 142131 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 859-2 chr1 181997991 181998594 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 63420 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 233-228 chr3 20809318 20809491 + 2 NA Intergenic Intergenic 466936 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 367-32 chr1 195297924 195298117 + 2 NA Intergenic L1ME5|LINE|L1 790695 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 203-225 chr7 115145892 115145995 + 2 NA intron (NR_126407, intron 2 of 4) L1MC5a|LINE|L1 66985 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 749-69 chr4 44231202 44231681 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 214379 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 375-121 chr14 29501010 29501268 + 2 NA Intergenic Intergenic 425957 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 234-165 chr2 49125090 49125252 + 2 NA intron (NM_000145, intron 1 of 9) L2a|LINE|L2 29344 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 328-66 chr10 111514847 111515029 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 400647 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 139-60 chr4 30482799 30482889 + 2 NA Intergenic Intergenic -237525 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 343-72 chr11 28775940 28776159 + 2 NA Intergenic Intergenic -298501 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 367-465 chr8 124104546 124104740 + 2 NA intron (NM_001039112, intron 39 of 40) intron (NM_001039112, intron 39 of 40) -63861 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 273-441 chr8 53366888 53367097 + 2 NA Intergenic Intergenic -115295 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 345-103 chr11 116630544 116630848 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -8726 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 701-95 chr8 79681366 79681991 + 2 NA Intergenic MER30|DNA|hAT-Charlie 70561 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 452-266 chr8 78182232 78182575 + 2 NA Intergenic Intergenic -333937 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 581-21 chr10 109734100 109734547 + 2 NA Intergenic Intergenic 188923 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 262-420 chr8 52635486 52635643 + 2 NA intron (NM_001083617, intron 19 of 23) intron (NM_001083617, intron 19 of 23) -70134 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 764-38 chr2 118811813 118812290 + 2 NA Intergenic L1ME4b|LINE|L1 36132 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 224-135 chr2 41685804 41686001 + 2 NA Intergenic L1ME5|LINE|L1 -191653 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 332-454 chr6 52824602 52824804 + 2 NA Intergenic Intergenic -20887 NM_145740 2938 Hs.446309 NM_145740 ENSG00000243955 GSTA1 GST-epsilon|GST2|GSTA1-1|GTH1 glutathione S-transferase alpha 1 protein-coding 382-203 chr2 95221215 95221528 + 2 NA Intergenic L1MEf|LINE|L1 -53078 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 280-360 chr6 136432642 136432851 + 2 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 34129 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 235-257 chr4 68243680 68243862 + 2 NA intron (NM_182502, intron 1 of 9) intron (NM_182502, intron 1 of 9) 1923 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 315-489 chr8 115850747 115850969 + 2 NA Intergenic L1M5|LINE|L1 -181883 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 476-50 chr11 79153512 79153833 + 2 NA intron (NM_001098816, intron 3 of 33) L2b|LINE|L2 248437 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 510-65 chr12 124209531 124209887 + 2 NA intron (NM_001347902, intron 3 of 4) Charlie1|DNA|hAT-Charlie -79455 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 354-34 chr1 227633054 227633245 + 2 NA intron (NR_102302, intron 2 of 5) LTR17|LTR|ERV1 64558 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 332-518 chr8 53930874 53931152 + 2 NA intron (NR_104579, intron 1 of 3) intron (NR_104579, intron 1 of 3) 50141 NM_003702 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 393-265 chr5 13079953 13080267 + 2 NA Intergenic L1MEd|LINE|L1 -47224 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 155-66 chr3 60863026 60863171 + 2 NA intron (NM_001320900, intron 4 of 9) MLT1E2|LTR|ERVL-MaLR -245228 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 197-48 chr12 81722469 81722634 + 2 NA intron (NM_003625, intron 3 of 32) L4_B_Mam|LINE|RTE-X 35956 NM_001220475 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 362-50 chr10 28137255 28137465 + 2 NA intron (NR_134518, intron 4 of 16) L1MEc|LINE|L1 -63982 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 163-33 chr12 46224819 46224975 + 2 NA intron (NM_030674, intron 5 of 16) intron (NM_030674, intron 5 of 16) 41619 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 272-241 chr20 47503766 47503972 + 2 NA intron (NM_181659, intron 1 of 22) intron (NM_181659, intron 1 of 22) 1982 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 446-179 chr3 16953189 16953571 + 2 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 20184 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 243-130 chr14 62314258 62314489 + 2 NA Intergenic Intergenic -174400 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 702-2 chr1 36929092 36929712 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 105113 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 441-249 chr7 62935754 62936071 + 2 NA Intergenic ALR/Alpha|Satellite|centr 368144 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 334-34 chr1 179717303 179717480 + 2 NA Intergenic L1M3|LINE|L1 -10385 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 300-33 chr10 17925418 17925689 + 2 NA Intergenic Intergenic -26286 NM_001282734 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 398-150 chr19 56805484 56805828 + 2 NA intron (NR_163143, intron 8 of 12) L1MC4|LINE|L1 -6824 NR_023847 100169890 NR_023847 PEG3-AS1 APEG3|NCRNA00155|PEG3-AS|PEG3AS PEG3 antisense RNA 1 ncRNA 405-353 chrX 13391683 13391940 + 2 NA Intergenic L1MC4|LINE|L1 56570 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 226-171 chr2 107998281 107998464 + 2 NA intron (NM_001305007, intron 5 of 8) intron (NM_001305007, intron 5 of 8) 11848 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 215-47 chr11 31343957 31344119 + 2 NA intron (NM_181807, intron 1 of 8) intron (NM_181807, intron 1 of 8) 25701 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 310-133 chr14 49523776 49523948 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie 62518 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 246-437 chr9 101406951 101407190 + 2 NA intron (NM_197977, intron 3 of 3) intron (NM_197977, intron 3 of 3) 8216 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 325-108 chr11 99813924 99814231 + 2 NA intron (NM_175566, intron 1 of 21) L2|LINE|L2 257932 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 397-227 chr4 85273040 85273390 + 2 NA Intergenic L1PA16|LINE|L1 -201935 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 306-105 chr12 59455134 59455342 + 2 NA Intergenic Intergenic -140791 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 348-380 chr4 134153027 134153215 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 48668 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 240-58 chr10 73632148 73632363 + 2 NA intron (NM_021245, intron 5 of 5) intron (NM_021245, intron 5 of 5) -6274 NM_001350995 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 334-482 chr6 164559980 164560192 + 2 NA Intergenic L1ME1|LINE|L1 261977 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 290-431 chr7 78276428 78276649 + 2 NA intron (NM_001301128, intron 9 of 20) intron (NM_001301128, intron 9 of 20) -70704 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 186-125 chr5 15590821 15590956 + 2 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 24114 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 261-172 chr2 13756798 13756993 + 2 NA Intergenic Intergenic 644063 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 253-277 chr3 176049708 176049872 + 2 NA Intergenic Intergenic -194761 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 153-57 chr2 172577879 172577993 + 2 NA intron (NM_002610, intron 8 of 10) L1MB7|LINE|L1 21846 NM_002610 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 404-188 chr20 69007 69233 + 2 NA Intergenic Intergenic -18552 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 366-443 chr8 87278564 87278780 + 2 NA intron (NM_173538, intron 6 of 10) L1MEg|LINE|L1 412257 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 527-8 chr1 106541772 106542144 + 2 NA Intergenic Intergenic -276281 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 569-46 chr12 47810189 47810578 + 2 NA intron (NM_015401, intron 1 of 25) intron (NM_015401, intron 1 of 25) 9520 NM_001308090 51564 Hs.200063 NM_015401 ENSG00000061273 HDAC7 HD7|HD7A|HDAC7A histone deacetylase 7 protein-coding 380-150 chr17 51431864 51432104 + 2 NA Intergenic L1M5|LINE|L1 -3443 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 351-475 chr8 58735661 58735915 + 2 NA Intergenic L1MA7|LINE|L1 -75935 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 341-453 chr5 156848995 156849305 + 2 NA Intergenic L1M3f|LINE|L1 -1145 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 345-223 chr18 54994025 54994214 + 2 NA Intergenic Intergenic -34658 NM_025214 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 273-26 chr1 180407244 180407476 + 2 NA intron (NM_032360, intron 5 of 7) intron (NM_032360, intron 5 of 7) 31030 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 713-80 chr9 75565461 75566024 + 2 NA Intergenic L1PA15|LINE|L1 -324902 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 310-83 chr11 80515735 80516017 + 2 NA Intergenic Intergenic 246927 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 432-103 chr17 60524227 60524503 + 2 NA intron (NM_006380, intron 1 of 12) intron (NM_006380, intron 1 of 12) 1875 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 299-133 chr14 57553779 57553974 + 2 NA Intergenic L1M3f|LINE|L1 -60019 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 314-386 chr3 110461063 110461344 + 2 NA Intergenic Intergenic 608756 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 608-71 chr2 83469223 83469620 + 2 NA Intergenic Intergenic -53393 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 266-16 chr1 152194225 152194452 + 2 NA Intergenic Intergenic 29858 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 372-199 chr18 3387625 3387934 + 2 NA Intergenic Intergenic -24148 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 252-325 chr5 31588506 31588719 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 -50519 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 234-409 chrX 108782450 108782629 + 2 NA Intergenic L1MB8|LINE|L1 45999 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 217-15 chr1 112561201 112561310 + 2 NA intron (NM_017744, intron 11 of 14) intron (NM_017744, intron 11 of 14) 52290 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 404-193 chr20 14605846 14606159 + 2 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 51618 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 220-224 chr3 59873909 59874085 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) 206912 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 612-3 chr1 98762085 98762655 + 2 NA Intergenic L1MB7|LINE|L1 100649 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 332-187 chr16 80256623 80256826 + 2 NA intron (NR_120307, intron 2 of 5) MIR|SINE|MIR -284010 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 242-222 chr21 30719690 30719858 + 2 NA promoter-TSS (NM_001164435) promoter-TSS (NM_001164435) -997 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 583-128 chr4 156332556 156332961 + 2 NA Intergenic Intergenic -378892 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 342-20 chr1 96231989 96232218 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 142022 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 236-237 chr3 112843901 112844083 + 2 NA intron (NM_001370552, intron 1 of 7) L1P4d|LINE|L1 1958 NM_001008784 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 207-288 chr8 67995261 67995381 + 2 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 43275 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 297-45 chr10 28056692 28056921 + 2 NA intron (NR_134517, intron 15 of 16) intron (NR_134517, intron 15 of 16) 16572 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 284-380 chr7 47230230 47230489 + 2 NA Intergenic FLAM_C|SINE|Alu 234444 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 387-358 chr8 50476359 50476655 + 2 NA intron (NR_135797, intron 8 of 20) L1MC3|LINE|L1 312376 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 313-437 chr5 93858815 93859119 + 2 NA intron (NM_032042, intron 7 of 10) intron (NM_032042, intron 7 of 10) -117367 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 252-167 chr18 38670060 38670270 + 2 NA Intergenic Intergenic 952010 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 493-212 chr3 124217199 124217613 + 2 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 84477 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 316-377 chr3 191791572 191791807 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 330526 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 427-112 chr2 49821738 49821985 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 152342 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 314-63 chr10 36375161 36375463 + 2 NA Intergenic Intergenic 597010 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 385-391 chr8 133743120 133743352 + 2 NA Intergenic Intergenic 34116 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 376-301 chr4 148497515 148497864 + 2 NA Intergenic Intergenic -52991 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 565-66 chr19 28879386 28879708 + 2 NA Intergenic Intergenic -85584 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 334-126 chr13 58549087 58549359 + 2 NA Intergenic Intergenic -316106 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 581-74 chr2 28974472 28975034 + 2 NA Intergenic AluSz|SINE|Alu -6545 NM_001321539 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 341-365 chr4 14906054 14906341 + 2 NA Intergenic L1MA8|LINE|L1 -18028 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 266-234 chr3 9617980 9618173 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -31429 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 292-123 chr13 55765676 55765897 + 2 NA Intergenic Intergenic 591332 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 300-277 chr3 94404487 94404702 + 2 NA Intergenic L1MA7|LINE|L1 341533 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 375-318 chr5 29814245 29814583 + 2 NA Intergenic Intergenic -66146 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 649-125 chrX 42406607 42407101 + 2 NA Intergenic MLT2C1|LTR|ERVL 371309 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 405-99 chr16 3041964 3042283 + 2 NA Intergenic AluJb|SINE|Alu -4438 NM_022468 64386 Hs.654979 NM_004142 ENSG00000008516 MMP25 MMP-25|MMP20|MMP20A|MMPL1|MT-MMP 6|MT-MMP6|MT6-MMP|MT6MMP|MTMMP6 matrix metallopeptidase 25 protein-coding 250-28 chr1 208809438 208809667 + 2 NA Intergenic Intergenic 80864 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 164-44 chr16 63224092 63224215 + 2 NA Intergenic Intergenic -1187715 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 603-37 chr12 118509093 118509638 + 2 NA Intergenic Intergenic 132810 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 123-9 chr11 11779856 11779930 + 2 NA Intergenic MIRb|SINE|MIR 3329 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 180-127 chr5 12680421 12680545 + 2 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 12624 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 316-610 chrX 91393941 91394236 + 2 NA Intergenic L1MCa|LINE|L1 -40751 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 536-232 chr8 97479792 97480171 + 2 NA Intergenic L1PA16|LINE|L1 -33484 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 199-59 chr14 52401516 52401660 + 2 NA Intergenic Intergenic 87276 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 363-445 chr8 90308411 90308670 + 2 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 87052 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 157-27 chr11 99749608 99749725 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 193521 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 380-347 chr6 124678426 124678749 + 2 NA intron (NM_001040214, intron 4 of 6) L1MB1|LINE|L1 -283958 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 476-265 chr8 90477267 90477590 + 2 NA Intergenic Intergenic 128635 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 223-253 chr4 96246451 96246645 + 2 NA Intergenic Intergenic -64155 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 271-14 chr1 105960260 105960431 + 2 NA intron (NR_146609, intron 5 of 5) L1MA6|LINE|L1 67908 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 241-82 chr12 32717902 32718115 + 2 NA intron (NM_001330380, intron 7 of 18) (AT)n|Simple_repeat|Simple_repeat 37889 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 319-20 chr1 112481372 112481628 + 2 NA intron (NM_001291880, intron 1 of 4) L1M2|LINE|L1 14959 NM_004185 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 379-172 chr2 122678789 122679035 + 2 NA Intergenic Intergenic 394569 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 339-630 chrX 140476261 140476435 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 28712 NM_005634 6658 Hs.157429 NM_005634 ENSG00000134595 SOX3 GHDX|MRGH|PHP|PHPX|SOXB SRY-box transcription factor 3 protein-coding 227-213 chr21 25850168 25850363 + 2 NA Intergenic Intergenic -114611 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 337-590 chr9 118430854 118431079 + 2 NA Intergenic L1MD2|LINE|L1 -248705 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 288-68 chr11 41510281 41510464 + 2 NA Intergenic Intergenic -50720 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 262-75 chr11 40071283 40071478 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 221750 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 451-9 chr1 162867297 162867642 + 2 NA intron (NM_178550, intron 1 of 3) L1ME1|LINE|L1 1346 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 341-514 chr8 48717466 48717684 + 2 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 17693 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 355-42 chr10 33580897 33581087 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 191688 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 140-29 chr16 78721191 78721321 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 621602 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 292-279 chr3 29128748 29128978 + 2 NA Intergenic Intergenic 152076 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 326-426 chr5 116023485 116023729 + 2 NA intron (NM_173800, intron 19 of 19) MLT1K|LTR|ERVL-MaLR -27859 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 727-25 chr12 123816594 123817017 + 2 NA intron (NM_207437, intron 20 of 77) L1M5|LINE|L1 54310 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 279-410 chr8 40646367 40646571 + 2 NA intron (NM_001135731, intron 4 of 5) L1MEf|LINE|L1 251357 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 264-380 chr7 19933891 19934131 + 2 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) -160394 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 337-283 chr2 175022733 175022937 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -17456 NR_038133 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 653-100 chr5 59457692 59458192 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) -100972 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 215-50 chr11 73086898 73087055 + 2 NA intron (NM_014824, intron 2 of 19) L1MB4|LINE|L1 55342 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 488-267 chr8 50343432 50343754 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 179462 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 537-200 chr5 116876564 116877029 + 2 NA Intergenic Intergenic -114587 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 247-412 chr8 106984397 106984587 + 2 NA Intergenic Intergenic -214248 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 210-318 chrX 122240117 122240262 + 2 NA Intergenic L1PA16|LINE|L1 869217 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 172-41 chr16 21620077 21620211 + 2 NA intron (NM_001077180, intron 3 of 4).2 intron (NM_001077180, intron 3 of 4).2 20567 NM_016025 51108 Hs.279583 NM_016025 ENSG00000197006 METTL9 CGI-81|DREV|DREV1|PAP1 methyltransferase like 9 protein-coding 562-187 chr6 5628878 5629247 + 2 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) 66210 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 334-178 chr15 77147687 77147950 + 2 NA intron (NM_024776, intron 6 of 7) intron (NM_024776, intron 6 of 7) -76709 NM_001168412 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 207-320 chrX 86487919 86488048 + 2 NA intron (NM_001139515, intron 2 of 11) MIRb|SINE|MIR 225015 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 488-179 chr3 146634796 146635280 + 2 NA Intergenic L1MC5a|LINE|L1 -28822 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 379-193 chr20 56325962 56326287 + 2 NA Intergenic Intergenic -32850 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 443-250 chr5 133161029 133161372 + 2 NA Intergenic L1ME3Cz|LINE|L1 109187 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 390-12 chr1 116793892 116794220 + 2 NA Intergenic L1MC1|LINE|L1 39626 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 527-118 chr19 36514217 36514570 + 2 NA exon (NM_001166037, exon 3 of 3) exon (NM_001166037, exon 3 of 3) 13878 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 242-187 chr2 77449170 77449347 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 73118 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 232-39 chr10 75583479 75583646 + 2 NA intron (NM_001305581, intron 2 of 6) MSTA|LTR|ERVL-MaLR 31104 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 245-260 chr4 104244025 104244167 + 2 NA Intergenic L1PA15|LINE|L1 -246869 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 158-43 chr18 33866152 33866248 + 2 NA intron (NM_001353232, intron 9 of 9) intron (NM_001353232, intron 9 of 9) 182412 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 242-71 chr12 20676261 20676442 + 2 NA intron (NM_000921, intron 15 of 15) L1MA4A|LINE|L1 -19004 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 400-26 chr1 232863475 232863840 + 2 NA Intergenic Intergenic 58765 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 229-341 chr6 135569127 135569338 + 2 NA intron (NR_152845, intron 2 of 4) HAL1|LINE|L1 71431 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 511-139 chr2 198405042 198405358 + 2 NA Intergenic MIR|SINE|MIR -30103 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 239-59 chr11 77841393 77841547 + 2 NA intron (NM_001363564, intron 1 of 3) L1M4a2|LINE|L1 332 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 255-368 chr6 151922835 151923041 + 2 NA intron (NM_001122741, intron 4 of 8) L1MC3|LINE|L1 113831 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 194-233 chrX 125734941 125735092 + 2 NA Intergenic L1MA3|LINE|L1 -374746 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 305-470 chr6 53220795 53220987 + 2 NA Intergenic Intergenic -56102 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 299-317 chr4 38240652 38240885 + 2 NA Intergenic L1M5|LINE|L1 120814 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 612-103 chr4 70244877 70245365 + 2 NA intron (NM_005212, intron 2 of 4) intron (NM_005212, intron 2 of 4) 2505 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 404-342 chr9 29485454 29485681 + 2 NA Intergenic (TTTTG)n|Simple_repeat|Simple_repeat -271966 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 545-115 chr2 116273059 116273440 + 2 NA Intergenic Intergenic 929434 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 291-404 chr7 44411756 44412007 + 2 NA intron (NM_015332, intron 3 of 5) L1ME3Cz|LINE|L1 78777 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 372-381 chr5 3007097 3007444 + 2 NA Intergenic Intergenic 89416 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 362-472 chrX 35102378 35102714 + 2 NA Intergenic Intergenic 159750 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 256-203 chr2 106892758 106892944 + 2 NA Intergenic MER89|LTR|ERV1 -5742 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 149-96 chr7 100735527 100735625 + 2 NA intron (NR_111919, intron 2 of 46) AluJr|SINE|Alu 1981 NM_003386 7455 Hs.307004 NM_003386 ENSG00000146839 ZAN - zonadhesin (gene/pseudogene) protein-coding 425-14 chr1 180714804 180715200 + 2 NA intron (NR_137330, intron 2 of 12) L3|LINE|CR1 82980 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 331-412 chr5 30443431 30443714 + 2 NA Intergenic L1MA3|LINE|L1 563012 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 453-184 chr4 78212255 78212626 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) -76545 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 256-366 chr6 103671789 103671959 + 2 NA Intergenic L1MB5|LINE|L1 1187672 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 353-553 chr9 32175432 32175634 + 2 NA Intergenic LTR16E2|LTR|ERVL -209070 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 344-310 chr3 40150276 40150541 + 2 NA intron (NM_001284426, intron 1 of 14) intron (NM_001284426, intron 1 of 14) 50397 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 889-3 chr10 58201120 58201709 + 2 NA intron (NM_152230, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 66480 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 328-234 chr19 36928564 36928824 + 2 NA intron (NM_001204835, intron 4 of 6) L1M5|LINE|L1 12362 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 661-82 chr5 105742306 105742756 + 2 NA Intergenic Intergenic 643057 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 113-30 chr2 138807043 138807110 + 2 NA Intergenic L1ME1|LINE|L1 -26686 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 121-68 chr8 113887419 113887505 + 2 NA Intergenic L1MEg|LINE|L1 -450523 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 349-524 chrX 13289514 13289713 + 2 NA intron (NR_146309, intron 1 of 1) intron (NR_146309, intron 1 of 1) 13839 NR_146309 109729169 Hs.348675 NR_146309 LINC02154 - long intergenic non-protein coding RNA 2154 ncRNA 288-239 chr21 27195599 27195744 + 2 NA Intergenic L1PREC2|LINE|L1 -228583 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 254-100 chr13 87468418 87468605 + 2 NA intron (NR_033829, intron 3 of 5) L1MA6|LINE|L1 150229 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 325-35 chr1 207438094 207438382 + 2 NA Intergenic L2b|LINE|L2 -16062 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 308-544 chr9 122528755 122529006 + 2 NA Intergenic MIR3|SINE|MIR -1587 NM_012363 138883 Hs.553604 NM_012363 ENSG00000171505 OR1N1 OR1-26|OR1N3|OR9-22 olfactory receptor family 1 subfamily N member 1 protein-coding 251-335 chr6 62131073 62131259 + 2 NA intron (NR_146874, intron 2 of 13) MER5A|DNA|hAT-Charlie 155059 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 285-215 chr2 153304336 153304507 + 2 NA Intergenic Intergenic 174341 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 426-10 chr1 113992786 113993063 + 2 NA Intergenic L1M2c|LINE|L1 13450 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 416-70 chr11 58303260 58303622 + 2 NA Intergenic L1ME2|LINE|L1 -35181 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 315-133 chr14 58985738 58986040 + 2 NA intron (NR_110547, intron 4 of 5) (CATATA)n|Simple_repeat|Simple_repeat 157601 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 200-91 chr15 100456588 100456730 + 2 NA intron (NM_001290341, intron 12 of 13) intron (NM_001290341, intron 12 of 13) 83720 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 234-186 chr2 133459639 133459805 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 108741 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 212-150 chr2 51430513 51430657 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 397984 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 239-328 chr5 118460598 118460766 + 2 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 101435 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 284-361 chr6 154215045 154215254 + 2 NA intron (NM_015553, intron 7 of 11) intron (NM_015553, intron 7 of 11) 114932 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 386-267 chr4 94922842 94923169 + 2 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -73227 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 379-216 chr3 80073268 80073537 + 2 NA Intergenic Intergenic -305404 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 183-100 chr4 36178400 36178533 + 2 NA intron (NR_146894, intron 8 of 32) intron (NR_146894, intron 8 of 32) 65473 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 276-104 chr12 19707018 19707174 + 2 NA Intergenic L1MB7|LINE|L1 266497 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 238-239 chr3 70872699 70872864 + 2 NA Intergenic Intergenic 192143 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 232-406 chrX 4296196 4296317 + 2 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 337316 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 354-388 chr5 162878145 162878489 + 2 NA Intergenic LOR1-int|LTR|ERV1 -559254 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 357-49 chr10 121011907 121012196 + 2 NA Intergenic L1MC1|LINE|L1 160689 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 274-382 chr8 75908945 75909156 + 2 NA Intergenic Intergenic 369082 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 317-530 chr9 84196663 84196845 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 133311 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 351-258 chr20 22532937 22533196 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 45576 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 360-396 chr6 22530288 22530490 + 2 NA Intergenic Intergenic -39177 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 664-49 chr18 61031087 61031570 + 2 NA Intergenic Intergenic -302102 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 535-149 chr20 540358 540723 + 2 NA intron (NM_001362770, intron 1 of 14) intron (NM_001362770, intron 1 of 14) 3250 NM_177560 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 444-127 chr2 193419069 193419377 + 2 NA Intergenic L1ME1|LINE|L1 669378 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 573-189 chr7 108934492 108934960 + 2 NA Intergenic Intergenic -50139 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 387-130 chr16 50982670 50982897 + 2 NA intron (NR_039672, intron 2 of 6) MIRc|SINE|MIR -34975 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 349-437 chr5 179044311 179044653 + 2 NA Intergenic Intergenic -15891 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 226-389 chr9 126922425 126922605 + 2 NA intron (NM_001366400, intron 1 of 18) intron (NM_001366400, intron 1 of 18) 7076 NM_001366400 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 132-71 chr6 124006424 124006524 + 2 NA intron (NM_001040214, intron 1 of 6) MLT1K|LTR|ERVL-MaLR 202609 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 281-2 chr1 36769674 36769847 + 2 NA Intergenic Intergenic 264755 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 209-73 chr12 71487281 71487457 + 2 NA intron (NR_110596, intron 1 of 19) intron (NR_110596, intron 1 of 19) 47571 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 487-139 chr2 50081448 50081844 + 2 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -107443 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 389-307 chr5 171180119 171180413 + 2 NA intron (NM_022897, intron 16 of 27) intron (NM_022897, intron 16 of 27) -128982 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 212-222 chr3 133261067 133261262 + 2 NA intron (NM_001282865, intron 2 of 3) (TTCA)n|Simple_repeat|Simple_repeat -4043 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 288-9 chr1 66403729 66403931 + 2 NA Intergenic MIRb|SINE|MIR 49295 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 288-302 chr4 79843159 79843445 + 2 NA intron (NR_026555, intron 1 of 1) L1PA3|LINE|L1 15831 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 317-64 chr10 94580532 94580764 + 2 NA intron (NM_001289074, intron 11 of 22) intron (NM_001289074, intron 11 of 22) 34860 NM_001289073 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 492-92 chr14 72317171 72317620 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -199425 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 246-413 chr8 112259515 112259667 + 2 NA intron (NM_001363185, intron 57 of 66) L1PA7|LINE|L1 -383902 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 512-165 chr3 58646538 58646941 + 2 NA intron (NM_138805, intron 4 of 9) MIRb|SINE|MIR -19129 NM_001282714 11170 Hs.506357 NM_007177 ENSG00000168309 FAM107A DRR1|TU3A family with sequence similarity 107 member A protein-coding 536-103 chr18 13197071 13197431 + 2 NA Intergenic L1MB3|LINE|L1 -21509 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 623-107 chr5 62743179 62743745 + 2 NA Intergenic Intergenic 164643 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 374-42 chr10 109584594 109584796 + 2 NA Intergenic L1ME1|LINE|L1 338551 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 267-178 chr2 44277758 44277957 + 2 NA intron (NM_000341, intron 1 of 9) intron (NM_000341, intron 1 of 9) 2377 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 300-25 chr1 202668129 202668354 + 2 NA intron (NM_177402, intron 1 of 8) intron (NM_177402, intron 1 of 8) -24788 NM_001136504 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 425-133 chr2 34173029 34173387 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 105982 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 304-214 chr18 67285615 67285861 + 2 NA Intergenic L1PA13|LINE|L1 204154 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 514-111 chr16 27395393 27395832 + 2 NA Intergenic L1MB8|LINE|L1 -6562 NM_181079 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 139-91 chr8 112091398 112091477 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -552056 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 308-228 chr2 63123769 63123953 + 2 NA intron (NR_148704, intron 18 of 18) L1ME4a|LINE|L1 -4319 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 420-258 chr6 132738629 132738965 + 2 NA Intergenic L2b|LINE|L2 -4032 NM_001291703 55350 Hs.183656 NM_018399 VNN3 HSA238982 vanin 3 protein-coding 152-47 chr2 48845338 48845446 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -89668 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 373-27 chr1 173555642 173555901 + 2 NA intron (NM_178527, intron 10 of 27) intron (NM_178527, intron 10 of 27) 47301 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 200-72 chr14 41885374 41885560 + 2 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 278611 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 329-36 chr1 231149696 231149992 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR -13084 NM_001300889 440730 Hs.655089 NM_001004342 ENSG00000119283 TRIM67 TNL tripartite motif containing 67 protein-coding 131-44 chr20 15924586 15924708 + 2 NA intron (NR_130924, intron 1 of 1) L2c|LINE|L2 -1333 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 584-49 chr16 27120221 27120579 + 2 NA Intergenic L1MA9|LINE|L1 53473 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 326-346 chr3 105988032 105988332 + 2 NA Intergenic L2a|LINE|L2 -118781 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 350-186 chr18 451253 451434 + 2 NA intron (NM_130386, intron 2 of 9) THE1D-int|LTR|ERVL-MaLR 49358 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 515-96 chr18 13927119 13927474 + 2 NA Intergenic AluSc8|SINE|Alu -11589 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 613-43 chr17 65908411 65908987 + 2 NA intron (NM_001353129, intron 19 of 26) AluSp|SINE|Alu -82156 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 338-582 chr9 27932472 27932804 + 2 NA Intergenic Intergenic -358772 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 429-322 chr9 1181719 1182113 + 2 NA Intergenic L2a|LINE|L2 130429 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 507-173 chr3 185239970 185240421 + 2 NA intron (NM_001966, intron 2 of 6) L1PB4|LINE|L1 13077 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 366-467 chr9 81520183 81520507 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 169190 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 324-189 chr15 91640671 91640883 + 2 NA Intergenic L1MC4|LINE|L1 177438 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 448-35 chr10 56318518 56318822 + 2 NA Intergenic Intergenic 42589 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 380-391 chr8 67974859 67975106 + 2 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 22936 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 164-100 chr6 63122843 63122951 + 2 NA Intergenic Intergenic 197080 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 281-280 chr3 25549240 25549459 + 2 NA intron (NR_110892, intron 3 of 6) L3|LINE|CR1 91039 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 291-87 chr12 2165212 2165406 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 58172 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 373-57 chr10 70746041 70746270 + 2 NA intron (NM_080722, intron 15 of 21) Charlie29a|DNA|hAT-Charlie 36418 NR_134534 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 316-520 chr7 64934511 64934706 + 2 NA Intergenic L1M2|LINE|L1 31366 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 156-40 chr16 25901269 25901359 + 2 NA intron (NM_006040, intron 1 of 1) LTR89|LTR|ERVL? -123923 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 238-372 chr8 48730147 48730302 + 2 NA intron (NM_001142857, intron 2 of 5) intron (NM_001142857, intron 2 of 5) 5044 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 504-142 chr2 186771677 186772130 + 2 NA Intergenic L1PBa|LINE|L1 77267 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 506-101 chr16 13649221 13649619 + 2 NA Intergenic AluSq2|SINE|Alu -270737 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 318-202 chr16 80856989 80857157 + 2 NA intron (NR_131948, intron 1 of 2) intron (NR_131948, intron 1 of 2) 35523 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 244-59 chr11 90988533 90988729 + 2 NA Intergenic L1MA7|LINE|L1 -119429 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 230-289 chr5 26202817 26202951 + 2 NA Intergenic L1MA10|LINE|L1 835702 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 513-199 chr4 30555673 30556053 + 2 NA Intergenic Intergenic -164506 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 278-367 chr6 60707351 60707608 + 2 NA Intergenic Intergenic -866651 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 361-40 chr10 46514393 46514677 + 2 NA Intergenic L1MEi|LINE|L1 41536 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 512-174 chr3 118352423 118352767 + 2 NA Intergenic Intergenic -289173 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 197-47 chr12 33707736 33707905 + 2 NA Intergenic L1MB8|LINE|L1 -268001 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 265-20 chr1 182312892 182313075 + 2 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 1078 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 373-241 chr21 16950658 16950914 + 2 NA Intergenic L1MA3|LINE|L1 360549 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 213-13 chr1 163364804 163364981 + 2 NA Intergenic Intergenic 42938 NM_031423 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 318-337 chr22 27091261 27091570 + 2 NA Intergenic LTR33|LTR|ERVL -30897 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 157-72 chr2 196615746 196615876 + 2 NA Intergenic L1MA4|LINE|L1 -22257 NM_001348768 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 285-81 chr12 27173849 27174032 + 2 NA Intergenic MIR|SINE|MIR -70346 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 163-12 chr1 211861184 211861280 + 2 NA Intergenic L1MC1|LINE|L1 30271 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 610-51 chr14 80075754 80076111 + 2 NA Intergenic L2a|LINE|L2 -135487 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 322-540 chr8 110212446 110212652 + 2 NA Intergenic L1MA2|LINE|L1 -236778 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 313-497 chr7 51621251 51621523 + 2 NA Intergenic Intergenic -228131 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 295-113 chr13 39231996 39232179 + 2 NA Intergenic MLT2A1|LTR|ERVL 193631 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 311-355 chr3 165430349 165430610 + 2 NA intron (NR_125764, intron 3 of 5) L1PB1|LINE|L1 223519 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 282-72 chr11 54909311 54909488 + 2 NA Intergenic ALR/Alpha|Satellite|centr 202567 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 252-400 chr7 54344926 54345140 + 2 NA intron (NR_120516, intron 1 of 2) intron (NR_120516, intron 1 of 2) 14336 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 242-120 chr15 83260471 83260620 + 2 NA intron (NM_001301206, intron 4 of 4) L2c|LINE|L2 22912 NM_001301206 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 310-388 chr5 1989118 1989313 + 2 NA Intergenic L1MEc|LINE|L1 101884 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 296-366 chr5 44166821 44167035 + 2 NA Intergenic L1PA15|LINE|L1 -221804 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 427-209 chr5 98241361 98241685 + 2 NA Intergenic L1MC4a|LINE|L1 -80284 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 324-71 chr10 100985166 100985373 + 2 NA TTS (NM_001308396) TTS (NM_001308396) 2228 NM_032112 84545 Hs.421848 NM_032112 ENSG00000055950 MRPL43 L43mt|MRP-L43|bMRP36a mitochondrial ribosomal protein L43 protein-coding 253-61 chr10 118111987 118112182 + 2 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -65143 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 330-52 chr10 20436478 20436756 + 2 NA Intergenic L1MC4|LINE|L1 -115353 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 621-6 chr1 163992285 163992807 + 2 NA Intergenic L1PA7|LINE|L1 -566814 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 470-297 chrX 79847482 79847946 + 2 NA Intergenic L1MA4|LINE|L1 -167039 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 291-97 chr12 41304217 41304425 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 116001 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 422-297 chr8 86099948 86100321 + 2 NA intron (NM_152565, intron 1 of 7) MIRc|SINE|MIR 1224 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 256-83 chr12 19848420 19848600 + 2 NA Intergenic FLAM_A|SINE|Alu -166175 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 227-318 chr6 110486342 110486539 + 2 NA Intergenic Intergenic -9827 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 653-68 chr2 68686826 68687303 + 2 NA Intergenic Intergenic 43476 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 505-327 chr9 103643513 103643939 + 2 NA Intergenic Intergenic -318693 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 285-17 chr1 158896601 158896856 + 2 NA Intergenic L1MEd|LINE|L1 -34824 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 138-74 chr6 50706394 50706491 + 2 NA Intergenic MIR|SINE|MIR -7102 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 281-91 chr12 74543405 74543630 + 2 NA 3' UTR (NM_001136262, exon 1 of 1) 3' UTR (NM_001136262, exon 1 of 1) 5682 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 356-106 chr12 33847610 33847874 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -174754 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 273-105 chr12 83009599 83009857 + 2 NA intron (NM_152588, intron 8 of 11) intron (NM_152588, intron 8 of 11) 322573 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 351-26 chr1 216166389 216166727 + 2 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 94093 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 231-391 chrX 151858493 151858707 + 2 NA Intergenic L1MA5A|LINE|L1 52483 NR_136578 105373368 Hs.256904 NR_136578 MAGEA4-AS1 - MAGEA4 antisense RNA 1 ncRNA 197-40 chr11 41838405 41838589 + 2 NA Intergenic L1M2|LINE|L1 123929 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 209-203 chr3 87541705 87541896 + 2 NA Intergenic Intergenic -250906 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 513-40 chr11 10054059 10054377 + 2 NA intron (NM_030962, intron 2 of 39) L1M5|LINE|L1 215076 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 260-188 chr18 72406093 72406256 + 2 NA Intergenic Intergenic 138168 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 674-14 chr11 29833804 29834265 + 2 NA Intergenic L1PA10|LINE|L1 148359 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 367-424 chr7 86225560 86225913 + 2 NA Intergenic MER52A|LTR|ERV1 -418173 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 282-60 chr10 130509024 130509244 + 2 NA Intergenic Intergenic 372725 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 435-60 chr12 25283924 25284206 + 2 NA Intergenic L1MD3|LINE|L1 -33136 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 308-440 chr6 159162075 159162374 + 2 NA Intergenic Intergenic -7176 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 335-231 chr2 16992737 16993036 + 2 NA Intergenic L1MA3|LINE|L1 -327052 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 415-258 chr7 53524824 53525233 + 2 NA Intergenic L1MCb|LINE|L1 286903 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 262-430 chr8 84851443 84851615 + 2 NA intron (NM_001287244, intron 4 of 7) intron (NM_001287244, intron 4 of 7) 145602 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 191-191 chr6 156211756 156211928 + 2 NA Intergenic L1MA4A|LINE|L1 -166908 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 299-499 chrX 64931265 64931494 + 2 NA intron (NM_001178032, intron 1 of 4) L1PBa|LINE|L1 45071 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 332-493 chr7 78390093 78390305 + 2 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 42957 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 412-152 chr2 46002585 46002945 + 2 NA intron (NM_005400, intron 7 of 14) intron (NM_005400, intron 7 of 14) -294642 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 445-59 chr13 66284897 66285230 + 2 NA Intergenic Intergenic 66813 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 292-146 chr14 97371155 97371411 + 2 NA Intergenic Intergenic -87533 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 316-578 chr9 30045016 30045297 + 2 NA Intergenic L1MD2|LINE|L1 363298 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 270-392 chr8 105542706 105542907 + 2 NA intron (NM_001362837, intron 3 of 7) L1MD2|LINE|L1 223263 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 856-2 chr1 86558448 86559040 + 2 NA intron (NM_012128, intron 1 of 13) THE1C|LTR|ERVL-MaLR 11666 NM_012128 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 376-251 chr3 94194938 94195278 + 2 NA Intergenic Intergenic 132047 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 520-130 chr18 72462593 72463003 + 2 NA Intergenic Intergenic 81544 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 393-351 chr8 77483383 77483681 + 2 NA Intergenic Intergenic 32835 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 297-132 chr14 51033919 51034195 + 2 NA intron (NM_015163, intron 1 of 9) L1M5|LINE|L1 61647 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 328-349 chr3 61339659 61339891 + 2 NA Intergenic L1M5|LINE|L1 -88314 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 423-294 chr8 83320666 83320934 + 2 NA Intergenic Intergenic -82958 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 334-347 chr3 73439423 73439697 + 2 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -5565 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 230-221 chr22 21744198 21744344 + 2 NA Intergenic Intergenic -8477 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 464-69 chr14 77585186 77585552 + 2 NA intron (NM_004863, intron 2 of 11) intron (NM_004863, intron 2 of 11) 31398 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 503-287 chr8 125516077 125516507 + 2 NA Intergenic Intergenic 84083 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 452-5 chr1 73079708 73079991 + 2 NA Intergenic L1PA7|LINE|L1 -226321 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 257-414 chr8 109858320 109858539 + 2 NA Intergenic Intergenic 117342 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 439-149 chr2 161941803 161942227 + 2 NA intron (NM_001354443, intron 15 of 25) intron (NM_001354443, intron 15 of 25) 132200 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 285-453 chr9 28686675 28686918 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 32509 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 209-266 chr5 160909690 160909882 + 2 NA Intergenic Intergenic 28840 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 384-407 chr9 124171699 124172070 + 2 NA Intergenic L1MEg|LINE|L1 -85722 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 323-329 chr3 68838420 68838699 + 2 NA intron (NM_001005527, intron 3 of 5) MER58C|DNA|hAT-Charlie 93988 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 317-122 chr13 35025328 35025523 + 2 NA intron (NM_015678, intron 1 of 57) L1PA16|LINE|L1 83138 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 219-119 chr15 90701112 90701236 + 2 NA intron (NR_120372, intron 2 of 3) AluJr|SINE|Alu 15966 NR_120372 101926895 Hs.564760 NR_120372 ENSG00000259736 CRTC3-AS1 - CRTC3 antisense RNA 1 ncRNA 277-177 chr2 17048816 17048980 + 2 NA Intergenic Intergenic -383064 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 371-279 chr4 68106903 68107120 + 2 NA intron (NM_207407, intron 1 of 9) intron (NM_207407, intron 1 of 9) 22858 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 492-232 chr6 109604565 109604914 + 2 NA intron (NM_001145128, intron 17 of 40) L1ME4a|LINE|L1 86473 NR_138057 221264 Hs.205144 NM_145025 ENSG00000155085 AK9 AK 9|AKD1|AKD2|C6orf199|C6orf224|dJ70A9.1 adenylate kinase 9 protein-coding 272-42 chr10 33645803 33645995 + 2 NA Intergenic Intergenic 126781 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 383-161 chr18 4214082 4214437 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -50343 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 559-16 chr10 80206098 80206592 + 2 NA promoter-TSS (NM_001278407) promoter-TSS (NM_001278407) -537 NM_001278407 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ALS23|ANX11|CAP-50|CAP50 annexin A11 protein-coding 419-159 chr2 222351454 222351777 + 2 NA intron (NR_136642, intron 2 of 3) L1ME2|LINE|L1 30954 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 629-70 chr2 195340734 195341162 + 2 NA Intergenic L3|LINE|CR1 -316010 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 461-10 chr1 112112993 112113327 + 2 NA Intergenic Intergenic 122624 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 212-10 chr1 114060437 114060585 + 2 NA Intergenic L1MC5a|LINE|L1 81037 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 223-333 chr8 26094839 26095018 + 2 NA Intergenic Intergenic -49515 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 289-186 chr18 14113930 14114153 + 2 NA intron (NM_145287, intron 2 of 2) L1MA3|LINE|L1 18394 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 482-235 chr7 10908111 10908432 + 2 NA Intergenic AluSp|SINE|Alu 31882 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 344-119 chr13 31355026 31355250 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 155163 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 454-36 chr10 106071661 106072043 + 2 NA Intergenic L1MEb|LINE|L1 -68313 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 361-228 chr2 110907965 110908202 + 2 NA intron (NM_001371254, intron 10 of 18) intron (NM_001371254, intron 10 of 18) 175510 NM_001371254 219-244 chr3 148196787 148196937 + 2 NA Intergenic MIRb|SINE|MIR -84029 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 392-193 chr22 48296865 48297176 + 2 NA Intergenic Intergenic 22656 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 220-148 chr2 2196560 2196742 + 2 NA intron (NM_015025, intron 2 of 24) L1MEg|LINE|L1 -122581 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 363-299 chr3 135340741 135340957 + 2 NA Intergenic L1MB5|LINE|L1 545589 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 374-380 chr8 46939515 46939718 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 98730 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 358-375 chr5 94118451 94118679 + 2 NA Intergenic Intergenic -6866 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 536-82 chr15 62535890 62536304 + 2 NA Intergenic Intergenic 109084 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 463-61 chr11 83854567 83854887 + 2 NA intron (NM_001142699, intron 16 of 27) L1MC1|LINE|L1 -172302 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 386-127 chr17 26860804 26861094 + 2 NA Intergenic (GAATG)n|Satellite|Satellite 228292 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 586-36 chr11 106886234 106886692 + 2 NA intron (NM_001256424, intron 4 of 8) MLT1J|LTR|ERVL-MaLR 132013 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 347-154 chr15 80411122 80411321 + 2 NA intron (NM_014862, intron 1 of 18) L2b|LINE|L2 6839 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 422-291 chr8 14386276 14386568 + 2 NA intron (NM_001322881, intron 2 of 6) BLACKJACK|DNA|hAT-Blackjack 467088 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 391-199 chr20 6522637 6522953 + 2 NA intron (NR_109953, intron 3 of 3) MLT1K|LTR|ERVL-MaLR 96063 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 349-392 chr4 159658416 159658629 + 2 NA Intergenic L1MCc|LINE|L1 119262 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 506-194 chr3 195589138 195589561 + 2 NA Intergenic Intergenic -5409 NM_001647 347 Hs.522555 NM_001647 ENSG00000189058 APOD - apolipoprotein D protein-coding 270-125 chr15 58669673 58669878 + 2 NA intron (NM_001320570, intron 4 of 14) L1ME1|LINE|L1 23832 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 374-271 chr4 33247334 33247566 + 2 NA Intergenic Intergenic 792443 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 311-228 chr19 34843484 34843684 + 2 NA Intergenic L1MB4|LINE|L1 -10715 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 235-322 chr7 31166760 31166974 + 2 NA Intergenic Intergenic 114406 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 179-73 chr3 119689729 119689882 + 2 NA Intergenic PRIMAX-int|LTR|ERV1 -12409 NM_005694 10063 Hs.534383 NM_005694 ENSG00000138495 COX17 - cytochrome c oxidase copper chaperone COX17 protein-coding 238-115 chr15 57882228 57882425 + 2 NA Intergenic Intergenic 131697 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 304-388 chr4 106615261 106615429 + 2 NA Intergenic Intergenic 181721 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 226-284 chr5 72401825 72401994 + 2 NA Intergenic Intergenic 81536 NM_024754 79810 Hs.126906 NM_024754 ENSG00000049883 PTCD2 - pentatricopeptide repeat domain 2 protein-coding 420-121 chr19 58260465 58260767 + 2 NA intron (NM_001320782, intron 6 of 6) intron (NM_001320782, intron 6 of 6) -18339 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 117-21 chr2 102418917 102419030 + 2 NA intron (NM_003853, intron 1 of 11) intron (NM_003853, intron 1 of 11) 183 NM_003853 8807 Hs.158315 NM_003853 ENSG00000115607 IL18RAP ACPL|CD218b|CDw218b|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1R-7|IL-1R7|IL-1RAcPL|IL18RB interleukin 18 receptor accessory protein protein-coding 225-211 chr3 88734454 88734621 + 2 NA Intergenic Intergenic -373084 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 193-173 chr6 56017052 56017192 + 2 NA Intergenic Intergenic 74540 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 317-404 chr5 179215015 179215190 + 2 NA intron (NM_014244, intron 3 of 21) L1M5|LINE|L1 130359 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 168-56 chr2 77202636 77202764 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 216735 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 206-242 chr6 142496855 142496992 + 2 NA Intergenic Intergenic 140913 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 363-20 chr1 165262196 165262489 + 2 NA intron (NM_177398, intron 3 of 8) MLT1J|LTR|ERVL-MaLR 93899 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 332-162 chr15 47315488 47315773 + 2 NA intron (NM_001198999, intron 1 of 19) L1MC1|LINE|L1 131541 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 336-117 chr12 6028152 6028364 + 2 NA intron (NM_000552, intron 22 of 51) intron (NM_000552, intron 22 of 51) 11925 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 131-22 chr13 89383645 89383747 + 2 NA Intergenic L1MA7|LINE|L1 116813 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 492-114 chr18 57514871 57515309 + 2 NA Intergenic L1PA10|LINE|L1 71612 NM_001371094 248-128 chr15 58285392 58285576 + 2 NA Intergenic Intergenic -146507 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 345-214 chr18 7478198 7478420 + 2 NA Intergenic X7C_LINE|LINE|CR1 -17303 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 354-403 chr6 92403892 92404156 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -713596 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 310-447 chr6 53625469 53625668 + 2 NA Intergenic Intergenic -2812 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 312-320 chr3 26594939 26595232 + 2 NA Intergenic Intergenic -27721 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 215-123 chr18 27727469 27727639 + 2 NA Intergenic Intergenic 309087 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 537-157 chr3 70685821 70686200 + 2 NA Intergenic L1ME5|LINE|L1 -373372 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 305-100 chr11 84953826 84954073 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -30528 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 374-95 chr14 32181025 32181271 + 2 NA Intergenic L1M2|LINE|L1 -20897 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 470-11 chr1 183479062 183479481 + 2 NA intron (NM_001174061, intron 1 of 21) MER20|DNA|hAT-Charlie 6772 NM_001174061 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 494-243 chr6 38766833 38767178 + 2 NA intron (NM_001371, intron 10 of 91) L1MB4|LINE|L1 51694 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 459-160 chr20 21939711 21940134 + 2 NA Intergenic Intergenic -114168 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 547-38 chr11 84066120 84066474 + 2 NA intron (NM_001142699, intron 10 of 27) intron (NM_001142699, intron 10 of 27) 206983 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 191-172 chr5 73613263 73613407 + 2 NA Intergenic Intergenic -12823 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 272-358 chr5 124657814 124658031 + 2 NA intron (NM_020747, intron 2 of 8) intron (NM_020747, intron 2 of 8) 87190 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 337-156 chr14 71860354 71860542 + 2 NA Intergenic L1PB1|LINE|L1 -71723 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 320-182 chr16 9915367 9915636 + 2 NA intron (NM_001134408, intron 3 of 13) intron (NM_001134408, intron 3 of 13) 266566 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 743-58 chr4 11473557 11474247 + 2 NA Intergenic MIRb|SINE|MIR -45008 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 712-66 chr4 174890070 174890626 + 2 NA Intergenic MLT2B1|LTR|ERVL -28010 NM_001278125 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 344-445 chr6 169700906 169701222 + 2 NA intron (NR_146876, intron 1 of 15) intron (NR_146876, intron 1 of 15) 965 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 527-244 chr7 51647889 51648252 + 2 NA Intergenic Intergenic -254814 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 869-47 chr9 77533983 77534720 + 2 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 86702 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 293-274 chr3 131849878 131850164 + 2 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 135910 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 299-65 chr10 99125252 99125415 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 110542 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 249-269 chr3 114564524 114564714 + 2 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 59587 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 385-88 chr13 108057330 108057650 + 2 NA Intergenic Intergenic 157292 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 595-37 chr12 13425342 13425809 + 2 NA Intergenic Intergenic -48830 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 473-192 chr4 53678156 53678535 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -17556 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 404-325 chr8 116104181 116104575 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 220681 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 352-3 chr1 36834971 36835177 + 2 NA intron (NM_000831, intron 10 of 15) L2c|LINE|L2 199441 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 519-59 chr14 53625764 53626157 + 2 NA Intergenic Intergenic 322524 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 593-12 chr10 32224027 32224435 + 2 NA Intergenic AluY|SINE|Alu 122927 NM_025209 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 263-450 chr9 77631535 77631695 + 2 NA intron (NM_004297, intron 1 of 6) Charlie18a|DNA|hAT-Charlie 16707 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 481-225 chr4 93603994 93604322 + 2 NA intron (NM_001286838, intron 12 of 14) Tigger1|DNA|TcMar-Tigger -224595 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 124-13 chr11 80494376 80494481 + 2 NA Intergenic L1MA6|LINE|L1 268375 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 607-149 chr8 135320270 135320642 + 2 NA Intergenic Intergenic 86325 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 287-45 chr10 19107865 19108142 + 2 NA intron (NM_001142308, intron 5 of 39) L1MA6|LINE|L1 59202 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 328-15 chr1 92437240 92437427 + 2 NA Intergenic L1ME3G|LINE|L1 46621 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 451-12 chr1 164350587 164350903 + 2 NA Intergenic L1PA14|LINE|L1 -208615 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 548-33 chr11 23768052 23768531 + 2 NA Intergenic PABL_A-int|LTR|ERV1 -349101 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 164-109 chr8 14172146 14172302 + 2 NA intron (NM_139167, intron 4 of 7) intron (NM_139167, intron 4 of 7) 542534 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 235-73 chr11 112958966 112959189 + 2 NA TTS (NR_120563) TTS (NR_120563) -2343 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 240-339 chr5 3134448 3134629 + 2 NA Intergenic L1MCa|LINE|L1 -43297 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 506-287 chr8 110010830 110011181 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -35234 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 640-133 chr8 81490436 81491006 + 2 NA Intergenic L1ME4a|LINE|L1 -7488 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 179-60 chr21 33978863 33978958 + 2 NA Intergenic AluSx|SINE|Alu 2528 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 238-132 chr16 79783581 79783803 + 2 NA intron (NR_104660, intron 1 of 3) intron (NR_104660, intron 1 of 3) -11557 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 397-365 chrX 47019327 47019653 + 2 NA intron (NM_001077445, intron 4 of 10) AluJo|SINE|Alu -58865 NM_001282848 9104 Hs.77854 NM_004683 ENSG00000130988 RGN GNL|HEL-S-41|RC|SMP30 regucalcin protein-coding 138-97 chr8 144204670 144204771 + 2 NA intron (NM_001288814, intron 11 of 41) L1ME3D|LINE|L1 56075 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 323-180 chr16 61473259 61473494 + 2 NA Intergenic L1MA1|LINE|L1 -417610 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 321-118 chr12 359174 359411 + 2 NA intron (NM_001042603, intron 5 of 27) L1MC5a|LINE|L1 30028 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 315-519 chr9 108412251 108412481 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie 443620 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 232-251 chr3 114171053 114171259 + 2 NA intron (NM_000796, intron 2 of 6) intron (NM_000796, intron 2 of 6) 7620 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 382-384 chr7 61915109 61915365 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1388819 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 303-408 chr6 164438853 164439121 + 2 NA Intergenic L2a|LINE|L2 383076 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 321-299 chr2 139608820 139609099 + 2 NA Intergenic L1MA2|LINE|L1 711635 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 279-372 chr6 124786303 124786492 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -176148 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 338-435 chr5 68432112 68432328 + 2 NA Intergenic L1MB1|LINE|L1 139643 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 544-178 chr5 53192964 53193331 + 2 NA Intergenic Intergenic 83305 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 247-259 chr3 54643532 54643738 + 2 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -3778 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 329-275 chr2 75904276 75904519 + 2 NA Intergenic L1ME4a|LINE|L1 -193482 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 259-361 chr6 163624250 163624455 + 2 NA Intergenic Intergenic 47132 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 304-420 chr5 60967483 60967654 + 2 NA intron (NM_174889, intron 1 of 3) L1MA9|LINE|L1 22363 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 245-272 chr5 11035926 11036075 + 2 NA intron (NM_001288715, intron 15 of 20) LTR37-int|LTR|ERV1 -274766 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 187-168 chr8 8321619 8321758 + 2 NA intron (NR_163138, intron 6 of 6) MIRb|SINE|MIR 64556 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 398-155 chr2 42804482 42804873 + 2 NA Intergenic MIR|SINE|MIR -12094 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 247-448 chrX 151671433 151671617 + 2 NA intron (NM_173493, intron 12 of 15) intron (NM_173493, intron 12 of 15) -23733 NM_024082 79057 Hs.209253 NM_024082 ENSG00000130032 PRRG3 PRGP3|TMG3 proline rich and Gla domain 3 protein-coding 319-169 chr16 9321577 9321851 + 2 NA Intergenic Intergenic -33874 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 215-124 chr18 43346874 43347052 + 2 NA Intergenic Intergenic -69473 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 395-44 chr10 90359680 90360049 + 2 NA Intergenic L1ME3D|LINE|L1 180941 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 240-63 chr10 108812542 108812778 + 2 NA Intergenic LOR1b|LTR|ERV1 -743367 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 206-172 chr4 14525446 14525624 + 2 NA intron (NR_126435, intron 5 of 6) intron (NR_126435, intron 5 of 6) 362634 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 391-126 chr16 52375239 52375504 + 2 NA Intergenic Intergenic 116807 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 311-90 chr12 4453723 4453919 + 2 NA Intergenic L1MC1|LINE|L1 -8207 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 385-336 chr6 116854765 116855069 + 2 NA Intergenic L1PA11|LINE|L1 -22325 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 333-345 chr3 42726737 42727001 + 2 NA intron (NM_144719, intron 13 of 15) L1MEd|LINE|L1 -5706 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 479-13 chr1 177558694 177559101 + 2 NA Intergenic Intergenic -141627 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 290-167 chr17 3128434 3128629 + 2 NA promoter-TSS (NM_003555) promoter-TSS (NM_003555) -980 NM_003555 8390 Hs.248183 NM_003555 ENSG00000183024 OR1G1 OR17-130|OR17-209|OR1G2 olfactory receptor family 1 subfamily G member 1 protein-coding 901-4 chr10 44217816 44218357 + 2 NA Intergenic L1M2|LINE|L1 -74664 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 227-81 chr12 44516371 44516584 + 2 NA intron (NM_006159, intron 20 of 20) intron (NM_006159, intron 20 of 20) 359184 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 578-17 chr1 227548693 227549076 + 2 NA Intergenic Intergenic -14672 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 350-56 chr10 103258630 103258895 + 2 NA Intergenic Intergenic 12875 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 252-169 chr18 71885113 71885350 + 2 NA Intergenic L2a|LINE|L2 -103005 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 255-66 chr11 114228641 114228868 + 2 NA intron (NM_006006, intron 4 of 6) intron (NM_006006, intron 4 of 6) -67059 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 189-202 chr8 56629470 56629610 + 2 NA Intergenic Intergenic -69717 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 297-348 chr4 153877443 153877676 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -88476 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 773-36 chr4 169811835 169812477 + 2 NA Intergenic AluJr|SINE|Alu -54212 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 401-13 chr1 181435482 181435732 + 2 NA Intergenic L2a|LINE|L2 -47910 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 519-226 chr8 51645798 51646157 + 2 NA intron (NM_144651, intron 2 of 22) L2a|LINE|L2 163468 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 243-442 chr8 61321910 61322086 + 2 NA intron (NM_173519, intron 2 of 5) L2a|LINE|L2 34028 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 267-380 chr6 122266708 122266899 + 2 NA Intergenic Intergenic -132748 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 469-292 chr8 136085632 136085887 + 2 NA Intergenic L1MA10|LINE|L1 -445039 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 351-34 chr10 21197592 21197777 + 2 NA Intergenic LTR26|LTR|ERV1 23382 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 374-153 chr18 13467558 13467834 + 2 NA intron (NM_181482, intron 4 of 5) L1MB4|LINE|L1 7749 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 218-11 chr1 105364538 105364695 + 2 NA Intergenic Intergenic 254319 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 384-387 chr8 138037580 138037932 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 45789 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 203-206 chr6 116595055 116595209 + 2 NA 3' UTR (NM_016104, exon 9 of 9) 3' UTR (NM_016104, exon 9 of 9) -21347 NM_001010892 345895 Hs.160380 NM_001010892 ENSG00000111834 RSPH4A CILD11|RSHL3|RSPH6B|dJ412I7.1 radial spoke head component 4A protein-coding 299-188 chr19 36886112 36886334 + 2 NA intron (NR_038362, intron 2 of 2) L1MC3|LINE|L1 29816 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 437-154 chr2 238662622 238662968 + 2 NA Intergenic L1M5|LINE|L1 -107296 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 465-288 chr8 88215811 88216169 + 2 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 111493 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 735-6 chr1 170886396 170886906 + 2 NA Intergenic Intergenic -48820 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 214-340 chr8 131093244 131093423 + 2 NA Intergenic L2b|LINE|L2 -52424 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 362-251 chr21 14943531 14943886 + 2 NA Intergenic Intergenic -25040 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 525-24 chr10 39288845 39289235 + 2 NA Intergenic ALR/Alpha|Satellite|centr 592444 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 253-332 chr5 77713649 77713853 + 2 NA intron (NM_004607, intron 1 of 3) intron (NM_004607, intron 1 of 3) 62588 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 243-329 chr4 86148506 86148644 + 2 NA intron (NR_110879, intron 3 of 3) L2c|LINE|L2 28769 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 547-192 chr5 135200774 135201148 + 2 NA intron (NR_161235, intron 3 of 5) L1MC4a|LINE|L1 47216 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 298-177 chr18 38073467 38073761 + 2 NA Intergenic Intergenic 416479 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 791-12 chr11 16547952 16548381 + 2 NA intron (NM_001367872, intron 3 of 16) L1MEf|LINE|L1 -71778 NM_033326 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 343-491 chr7 2431185 2431432 + 2 NA intron (NM_018641, intron 1 of 1) L1MDa|LINE|L1 27697 NM_001243794 55501 Hs.288853 NM_018641 ENSG00000136213 CHST12 C4S-2|C4ST-2|C4ST2 carbohydrate sulfotransferase 12 protein-coding 307-41 chr10 20763534 20763802 + 2 NA Intergenic L1MD1|LINE|L1 133934 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 546-124 chr20 11555128 11555579 + 2 NA Intergenic Intergenic -281970 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 353-3 chr1 34582501 34582779 + 2 NA Intergenic L2a|LINE|L2 87054 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 288-360 chr6 46361583 46361782 + 2 NA intron (NR_125838, intron 3 of 3) intron (NR_125838, intron 3 of 3) -35790 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 214-106 chr15 65539801 65539967 + 2 NA intron (NM_016395, intron 1 of 10) L1ME3Cz|LINE|L1 9421 NM_016395 51495 Hs.512973 NM_016395 ENSG00000074696 HACD3 B-IND1|BIND1|HSPC121|PTPLAD1 3-hydroxyacyl-CoA dehydratase 3 protein-coding 120 chr1 56120534 56120619 + 2 NA Intergenic Intergenic 175489 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 355-289 chr20 57858576 57858896 + 2 NA Intergenic L1MB7|LINE|L1 -145168 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 872-44 chr7 6660893 6661554 + 2 NA Intergenic Intergenic 23905 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 326-275 chr2 175269664 175269942 + 2 NA Intergenic Intergenic -88093 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 316-58 chr10 19275752 19275935 + 2 NA intron (NM_001142308, intron 19 of 39) intron (NM_001142308, intron 19 of 39) 227042 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 461-43 chr10 122803253 122803625 + 2 NA Intergenic L2a|LINE|L2 42418 NM_022034 50624 Hs.647182 NM_022034 ENSG00000138161 CUZD1 ERG-1|ERG1|ITMAP1|UO-44 CUB and zona pellucida like domains 1 protein-coding 241-354 chr7 3689840 3690062 + 2 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 388699 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 147-93 chrX 45672192 45672284 + 2 NA Intergenic Intergenic -58850 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 311-14 chr1 86767721 86768024 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 63296 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 436-246 chr5 98587485 98587770 + 2 NA Intergenic Intergenic -181005 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 500-91 chr15 26785286 26785667 + 2 NA Intergenic L1MEf|LINE|L1 -11713 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 255-459 chr9 35496629 35496810 + 2 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) 6608 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 266-279 chr4 46877076 46877267 + 2 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 32074 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 402-266 chr5 39628051 39628301 + 2 NA Intergenic Intergenic 107745 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 362-233 chr2 158252659 158252937 + 2 NA intron (NM_138803, intron 9 of 13) L2|LINE|L2 86148 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 338-129 chr12 63495488 63495739 + 2 NA Intergenic Intergenic 172880 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 149-23 chr12 51950834 51950936 + 2 NA promoter-TSS (NM_020328) promoter-TSS (NM_020328) -814 NM_020328 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor type 1B protein-coding 543-240 chr7 159135461 159135811 + 2 NA intron (NR_130758, intron 2 of 12) AluSx1|SINE|Alu 9231 NM_003382 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 500-199 chr4 37176213 37176588 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 65591 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 749-11 chr1 240316406 240317059 + 2 NA intron (NM_020066, intron 8 of 17) L1MD2|LINE|L1 224849 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 516-221 chr5 166491543 166491943 + 2 NA Intergenic LTR37A|LTR|ERV1 434627 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 151-69 chr6 61253743 61253874 + 2 NA Intergenic Intergenic -320322 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 353-286 chr20 42745211 42745486 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 59865 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 254-4 chr1 36762056 36762254 + 2 NA Intergenic (CACACA)n|Simple_repeat|Simple_repeat 272360 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 142-75 chr8 8636404 8636478 + 2 NA Intergenic Intergenic -65496 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 504-62 chr14 19897574 19897973 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 21505 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 308-400 chr5 145147987 145148223 + 2 NA Intergenic L1ME1|LINE|L1 687237 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 440-167 chr3 105825495 105825800 + 2 NA intron (NR_135809, intron 3 of 18) intron (NR_135809, intron 3 of 18) 41944 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 368-22 chr1 113516612 113516884 + 2 NA intron (NM_001142782, intron 1 of 20) L1MC3|LINE|L1 126233 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 413-209 chr4 30908300 30908634 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 188098 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 301-269 chr22 34868087 34868345 + 2 NA intron (NR_138042, intron 3 of 4) L2a|LINE|L2 129700 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 264-415 chr8 82576958 82577153 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -335049 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 362-338 chr5 19053420 19053684 + 2 NA Intergenic LTR16A2|LTR|ERVL 832720 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 243-241 chr2 168746602 168746778 + 2 NA intron (NM_001256126, intron 8 of 10) intron (NM_001256126, intron 8 of 10) 39739 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 306-459 chr7 24138433 24138720 + 2 NA Intergenic Intergenic -145614 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 218-128 chr17 79635507 79635658 + 2 NA Intergenic Intergenic -24531 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 262-88 chr11 112890345 112890559 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -70968 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 415-2 chr1 31319296 31319536 + 2 NA intron (NM_001282571, intron 3 of 6) intron (NM_001282571, intron 3 of 6) 22434 NM_001282571 51538 Hs.524094 NM_016505 ENSG00000121766 ZCCHC17 HSPC251|PS1D|pNO40 zinc finger CCHC-type containing 17 protein-coding 260-204 chr2 36007370 36007582 + 2 NA Intergenic Intergenic 348094 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 384-43 chr10 87995719 87995927 + 2 NA Intergenic L2-3_Crp|LINE|L2 132198 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 311-459 chr7 11819744 11819960 + 2 NA intron (NM_015204, intron 1 of 26) L1MC2|LINE|L1 12346 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 242-268 chr4 81736969 81737189 + 2 NA Intergenic Intergenic -265172 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 345-94 chr11 75049840 75050060 + 2 NA Intergenic MER4A1|LTR|ERV1 46940 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 307-157 chr15 54136394 54136613 + 2 NA intron (NM_001329919, intron 2 of 31) L1MA9|LINE|L1 123855 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 309-36 chr10 9751498 9751670 + 2 NA Intergenic L1ME2z|LINE|L1 -307138 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 270-93 chr13 34796826 34797032 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -145358 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 405-96 chr15 60752127 60752413 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 70701 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 211-199 chr3 158999877 159000052 + 2 NA Intergenic L1ME5|LINE|L1 -69288 NM_001197113 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 268-142 chr16 53570740 53570924 + 2 NA Intergenic MLT2B1|LTR|ERVL -67528 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 327-506 chr8 137105966 137106218 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 307496 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 418-46 chr11 95667407 95667746 + 2 NA Intergenic MLT1M|LTR|ERVL-MaLR 122206 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 544-70 chr14 85718069 85718363 + 2 NA Intergenic Intergenic 184867 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 237-217 chr21 16745156 16745343 + 2 NA Intergenic Tigger12|DNA|TcMar-Tigger 155012 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 303-196 chr2 18289264 18289504 + 2 NA Intergenic Intergenic 271269 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 419-233 chr5 67907958 67908267 + 2 NA Intergenic Intergenic 114899 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 298-277 chr22 27191318 27191474 + 2 NA Intergenic L1ME2z|LINE|L1 3880 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 361-246 chr2 216178172 216178422 + 2 NA intron (NM_021141, intron 16 of 20) intron (NM_021141, intron 16 of 20) -38592 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 240-281 chr3 20202121 20202319 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -15987 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 332-170 chr15 95672432 95672693 + 2 NA Intergenic Intergenic 239469 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 310-534 chr8 121702821 121703004 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -61472 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 311-420 chr5 126723766 126723960 + 2 NA Intergenic MER57D|LTR|ERV1 52623 NR_134485 102723557 Hs.582207 NR_134485 ENSG00000251072 LMNB1-DT - LMNB1 divergent transcript ncRNA 217-85 chr12 37952217 37952424 + 2 NA Intergenic ALR/Alpha|Satellite|centr -364454 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 865-47 chr8 134630028 134630589 + 2 NA intron (NM_020863, intron 3 of 15) intron (NM_020863, intron 3 of 15) 32237 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 154-62 chr21 28254538 28254618 + 2 NA Intergenic AluSx|SINE|Alu -25911 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 319-219 chr19 37239103 37239282 + 2 NA intron (NM_001345948, intron 5 of 5) AluSg4|SINE|Alu -12693 NR_110719 101927667 Hs.633102 NR_110718 ENSG00000226686 LINC01535 - long intergenic non-protein coding RNA 1535 ncRNA 307-295 chr3 27848173 27848458 + 2 NA intron (NR_146630, intron 3 of 4) intron (NR_146630, intron 3 of 4) -14179 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 293-306 chr4 84330730 84330986 + 2 NA Intergenic L1MB8|LINE|L1 -31689 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 414-197 chr22 27656554 27656831 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 145064 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 309-183 chr15 97133246 97133409 + 2 NA Intergenic L2|LINE|L2 349892 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 403-22 chr1 241195961 241196349 + 2 NA intron (NM_001282778, intron 2 of 16) L1MEg|LINE|L1 63883 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 422-124 chr18 12568651 12568948 + 2 NA intron (NM_020148, intron 2 of 15) intron (NM_020148, intron 2 of 15) 87933 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 210-172 chr3 61155364 61155533 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 96004 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 350-542 chr8 132538174 132538389 + 2 NA Intergenic Intergenic 23198 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 230-38 chr10 44224396 44224579 + 2 NA Intergenic L1ME3A|LINE|L1 -68263 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 309-337 chr3 16011158 16011398 + 2 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat 137507 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 230-81 chr12 41374155 41374293 + 2 NA intron (NM_001164595, intron 3 of 9) LTR35B|LTR|ERV1 -63515 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 267-200 chr2 114419756 114419978 + 2 NA Intergenic Intergenic -22774 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 530-29 chr10 80653512 80653885 + 2 NA TTS (NR_155749) TTS (NR_155749) 3901 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 384-18 chr1 163374419 163374776 + 2 NA Intergenic Intergenic 48594 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 276-62 chr10 78882329 78882572 + 2 NA Intergenic L1MD2|LINE|L1 184998 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 421-152 chr2 155820718 155820978 + 2 NA Intergenic L1PA15-16|LINE|L1 434083 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 535-87 chr15 57586372 57586853 + 2 NA Intergenic LTR16A2|LTR|ERVL -5292 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 488-259 chr7 102981659 102982041 + 2 NA intron (NR_105043, intron 7 of 20) MLT1A0|LTR|ERVL-MaLR 8420 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 329-617 chr9 134952991 134953245 + 2 NA Intergenic L1MB8|LINE|L1 -35206 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 576-19 chr10 88138260 88138738 + 2 NA Intergenic Intergenic 274874 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 588-72 chr2 108393529 108393918 + 2 NA Intergenic MER4-int|LTR|ERV1 15769 NM_006588 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 320-440 chr5 46033767 46033953 + 2 NA Intergenic ALR/Alpha|Satellite|centr -337480 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 415-138 chr2 134208405 134208727 + 2 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) -45506 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 584-28 chr11 80871262 80871841 + 2 NA Intergenic L2b|LINE|L2 -108748 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 356-11 chr1 82443797 82444002 + 2 NA Intergenic HAL1|LINE|L1 -459284 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 196-17 chr1 154630536 154630693 + 2 NA Intergenic L1ME3F|LINE|L1 -2617 NM_001365046 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 278-29 chr10 12525512 12525699 + 2 NA intron (NM_001351032, intron 3 of 11) L1MEf|LINE|L1 -53148 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 342-156 chr15 35792301 35792489 + 2 NA intron (NR_038251, intron 2 of 2) L1MA4A|LINE|L1 -134461 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 190-76 chr18 11743603 11743739 + 2 NA intron (NM_182978, intron 1 of 11) intron (NM_182978, intron 1 of 11) -7801 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 614-67 chr20 24111965 24112518 + 2 NA Intergenic Intergenic -87526 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 262-324 chr4 104356571 104356742 + 2 NA Intergenic L1M1|LINE|L1 -134309 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 313-557 chr9 31652161 31652327 + 2 NA Intergenic Intergenic -270754 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 491-93 chr17 68854527 68854952 + 2 NA Intergenic Intergenic 100653 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 491-273 chr9 15973401 15973761 + 2 NA 3' UTR (NM_173550, exon 26 of 26) 3' UTR (NM_173550, exon 26 of 26) 279526 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 322-581 chrX 69871594 69871785 + 2 NA intron (NM_001005609, intron 1 of 7) MLT2A1|LTR|ERVL -151168 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 518 chr1 29374267 29374527 + 2 NA Intergenic L1MA4|LINE|L1 -24283 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 279-396 chr7 52646071 52646223 + 2 NA Intergenic L2a|LINE|L2 -389486 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 213-124 chr19 22589966 22590158 + 2 NA Intergenic AluSc|SINE|Alu -6195 NR_033899 440518 Hs.568223 NR_033899 ENSG00000269332 GOLGA2P9 - GOLGA2 pseudogene 9 pseudo 347-488 chr8 672885 673220 + 2 NA intron (NM_001303100, intron 4 of 5) intron (NM_001303100, intron 4 of 5) 58172 NM_207332 157697 Hs.655310 NM_207332 ENSG00000104714 ERICH1 HSPC319 glutamate rich 1 protein-coding 489-160 chr20 12056687 12057172 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 139036 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 333-62 chr10 76665268 76665545 + 2 NA Intergenic L1MEd|LINE|L1 -222638 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 131-20 chr12 111708020 111708143 + 2 NA intron (NM_025247, intron 4 of 20) L4_B_Mam|LINE|RTE-X 22028 NM_001136538 80724 Hs.331141 NM_025247 ENSG00000111271 ACAD10 - acyl-CoA dehydrogenase family member 10 protein-coding 542-132 chr3 79356779 79357166 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -54755 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 264-23 chr1 218696870 218697045 + 2 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 186862 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 219-29 chr10 30994578 30994723 + 2 NA intron (NM_001143766, intron 1 of 7) MSTC|LTR|ERVL-MaLR 4867 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 257-95 chr12 118698117 118698368 + 2 NA Intergenic Intergenic 63437 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 529-2 chr1 51705765 51706151 + 2 NA intron (NM_148906, intron 2 of 22) intron (NM_148906, intron 2 of 22) -23892 NM_148904 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 205-26 chr10 16031765 16031916 + 2 NA Intergenic MamRep1527|LTR|LTR -171307 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 284-18 chr1 147534172 147534413 + 2 NA Intergenic Intergenic -7209 NM_004326 607 Hs.415209 NM_004326 ENSG00000116128 BCL9 LGS BCL9 transcription coactivator protein-coding 387-246 chr4 30494156 30494450 + 2 NA Intergenic Intergenic -226066 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 362-109 chr12 25045766 25046010 + 2 NA intron (NM_001321724, intron 17 of 17) L1M3d|LINE|L1 -6340 NM_001366542 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 268-38 chr10 33393203 33393382 + 2 NA Intergenic MER45C|DNA|hAT-Tip100 -58387 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 247-109 chr13 112110528 112110723 + 2 NA Intergenic Intergenic 3506 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 233-365 chr8 30722160 30722302 + 2 NA intron (NM_000637, intron 1 of 12) intron (NM_000637, intron 1 of 12) 5615 NM_000637 2936 Hs.271510 NM_000637 ENSG00000104687 GSR GR|HEL-75|HEL-S-122m glutathione-disulfide reductase protein-coding 388-356 chr8 136573848 136574074 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 43163 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 271-237 chr21 20346172 20346390 + 2 NA Intergenic Intergenic -87596 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 165-11 chr11 19256352 19256478 + 2 NA Intergenic Intergenic -14760 NM_001256372 79733 Hs.523526 NM_024680 ENSG00000129173 E2F8 E2F-8 E2F transcription factor 8 protein-coding 169-8 chr1 244570966 244571077 + 2 NA intron (NM_001130957, intron 10 of 21) L1ME3D|LINE|L1 -82027 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 281-351 chr5 18610377 18610568 + 2 NA Intergenic Intergenic 803198 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 212-171 chr2 141746670 141746822 + 2 NA intron (NM_018557, intron 2 of 90) L1MA3|LINE|L1 384955 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 336-414 chr4 59270878 59271142 + 2 NA Intergenic Intergenic 257437 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 452-215 chr5 111558929 111559328 + 2 NA intron (NR_040093, intron 1 of 6) L1PA8|LINE|L1 -46531 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 371-153 chr19 41688197 41688544 + 2 NA promoter-TSS (NM_001291485).2 promoter-TSS (NM_001291485).2 -100 NM_001291485 1087 Hs.74466 NM_006890 ENSG00000007306 CEACAM7 CGM2 carcinoembryonic antigen related cell adhesion molecule 7 protein-coding 392-217 chr3 170785931 170786147 + 2 NA Intergenic L1ME2z|LINE|L1 84156 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 882-34 chr4 64327508 64328219 + 2 NA intron (NM_001363796, intron 3 of 11) intron (NM_001363796, intron 3 of 11) 81587 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 501-179 chr3 191502450 191502803 + 2 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) 41463 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 433-266 chr7 107100652 107100965 + 2 NA intron (NM_002736, intron 2 of 10) L1M4a1|LINE|L1 56103 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 762-48 chr4 45963631 45964349 + 2 NA Intergenic L1PA13|LINE|L1 160064 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 305-446 chr5 108489027 108489303 + 2 NA Intergenic L1MA4|LINE|L1 -107067 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 434-255 chr7 19292508 19292725 + 2 NA Intergenic Intergenic -147195 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 364-151 chr16 9562489 9562685 + 2 NA Intergenic Intergenic -107082 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 257-357 chr6 75893611 75893807 + 2 NA intron (NM_001300899, intron 28 of 32) intron (NM_001300899, intron 28 of 32) 144470 NM_004999 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 258-277 chr3 187132246 187132421 + 2 NA intron (NM_052969, intron 1 of 2) intron (NM_052969, intron 1 of 2) 7163 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 415-101 chr17 71357870 71358165 + 2 NA Intergenic Intergenic -155838 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 253-248 chr3 24467760 24468002 + 2 NA intron (NM_001354709, intron 1 of 10) Tigger1|DNA|TcMar-Tigger -26206 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 321-616 chrX 98706657 98706833 + 2 NA Intergenic L1MA4A|LINE|L1 -1142210 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 357-308 chr4 45762052 45762395 + 2 NA Intergenic Intergenic 361831 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 424-204 chr4 132889393 132889693 + 2 NA Intergenic Intergenic 259573 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 448-88 chr15 86428632 86428987 + 2 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -111841 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 180-141 chr5 125938550 125938696 + 2 NA Intergenic Intergenic -240954 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 457-211 chr5 156627481 156627869 + 2 NA intron (NM_001128209, intron 5 of 7) MIRc|SINE|MIR -222620 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 269-14 chr1 105337699 105337894 + 2 NA Intergenic Intergenic 281139 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 632-118 chr8 85957651 85958122 + 2 NA Intergenic L1MA9|LINE|L1 111782 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 366-102 chr12 50960461 50960665 + 2 NA intron (NM_001109619, intron 3 of 4) intron (NM_001109619, intron 3 of 4) 8019 NM_001109619 613227 Hs.702849 NM_001109619 ENSG00000214511 HIGD1C GM921 HIG1 hypoxia inducible domain family member 1C protein-coding 463-318 chrX 73295393 73295729 + 2 NA Intergenic L1PA13|LINE|L1 -80710 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 288-379 chr6 126890385 126890612 + 2 NA Intergenic Intergenic -228173 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 546-243 chr8 119398072 119398591 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -18115 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 313-105 chr12 19721182 19721458 + 2 NA Intergenic Intergenic 280721 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 612-28 chr11 80458884 80459371 + 2 NA Intergenic Intergenic 303676 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 327-353 chr4 26078439 26078763 + 2 NA Intergenic Intergenic 164409 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 308-293 chr3 64794308 64794561 + 2 NA intron (NR_038264, intron 1 of 5) intron (NR_038264, intron 1 of 5) -106434 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 363-479 chr9 95026704 95026922 + 2 NA intron (NM_032823, intron 11 of 14) L1MB7|LINE|L1 -38537 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 151-23 chr14 54607246 54607356 + 2 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 39689 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 788-8 chr11 89495738 89496277 + 2 NA intron (NM_001143837, intron 3 of 20) intron (NM_001143837, intron 3 of 20) -3788 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 216-117 chr15 94639512 94639670 + 2 NA Intergenic Intergenic -215772 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 280-365 chr6 164058670 164058818 + 2 NA Intergenic Intergenic -387260 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 344-131 chr14 50336670 50336913 + 2 NA intron (NM_001282236, intron 7 of 8) L1ME4a|LINE|L1 24467 NM_001370605 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 296-484 chr8 125367868 125368110 + 2 NA TTS (NM_001349485) TTS (NM_001349485) -62369 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 273-345 chr5 11193271 11193461 + 2 NA intron (NM_001288715, intron 10 of 20) intron (NM_001288715, intron 10 of 20) 395551 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 640-123 chr7 40506501 40506957 + 2 NA intron (NM_001193312, intron 11 of 12) L1M4b|LINE|L1 371753 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 385-27 chr10 52310951 52311300 + 2 NA intron (NR_038277, intron 2 of 5) intron (NR_038277, intron 2 of 5) 3003 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 791-24 chr15 56125975 56126445 + 2 NA intron (NM_001370561, intron 7 of 11) intron (NM_001370561, intron 7 of 11) 63722 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 113-49 chr7 54681877 54681967 + 2 NA Intergenic Intergenic 77289 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 290-267 chr22 50451997 50452205 + 2 NA intron (NM_001365819, intron 35 of 39) L1MEf|LINE|L1 22934 NM_001365819 6305 Hs.589924 NM_002972 ENSG00000100241 SBF1 CMT4B3|DENND7A|MTMR5 SET binding factor 1 protein-coding 295-312 chr3 167967613 167967846 + 2 NA Intergenic L1MA3|LINE|L1 71781 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 132-77 chr7 7533518 7533611 + 2 NA intron (NM_001037763, intron 1 of 34) intron (NM_001037763, intron 1 of 34) 2309 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 288-418 chr7 97481097 97481308 + 2 NA Intergenic Intergenic -250884 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 355-473 chr7 84287602 84287943 + 2 NA Intergenic Intergenic -92983 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 233-338 chr6 84438291 84438417 + 2 NA intron (NR_132100, intron 4 of 4) intron (NR_132100, intron 4 of 4) 36575 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 313-289 chr2 204508307 204508541 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -37051 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 241-277 chr4 108510299 108510467 + 2 NA Intergenic L2a|LINE|L2 -46850 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 684-79 chr4 14259833 14260336 + 2 NA Intergenic Intergenic 148116 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 323-64 chr10 82760188 82760441 + 2 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -527394 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 414-234 chr4 63354653 63354987 + 2 NA Intergenic Intergenic 1054630 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 430-64 chr12 43970369 43970662 + 2 NA intron (NM_001286212, intron 3 of 6) AluY|SINE|Alu 134434 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 297-21 chr1 106473853 106474109 + 2 NA Intergenic L1PB2|LINE|L1 -344258 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 344-525 chr9 109175193 109175468 + 2 NA intron (NM_019114, intron 25 of 25) intron (NM_019114, intron 25 of 25) -8039 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 545-140 chr3 77587019 77587534 + 2 NA intron (NM_001290039, intron 17 of 26) MLT1J2|LTR|ERVL-MaLR 461687 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 474-275 chr8 13762601 13763015 + 2 NA Intergenic L1MA9|LINE|L1 133118 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 224-338 chr8 129787241 129787459 + 2 NA promoter-TSS (NM_031415) promoter-TSS (NM_031415) -726 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 197-204 chr8 99320652 99320797 + 2 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 216006 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 206-148 chr21 30343741 30343897 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 4787 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 284-214 chr2 155760243 155760440 + 2 NA Intergenic L1MEf|LINE|L1 494590 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 324-168 chr14 82908584 82908857 + 2 NA Intergenic Intergenic 266088 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 321-293 chr2 119577627 119577794 + 2 NA intron (NR_073132, intron 6 of 24) MIR|SINE|MIR 33261 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 168-41 chr17 5119319 5119407 + 2 NA intron (NM_001304284, intron 2 of 37) intron (NM_001304284, intron 2 of 37) -2915 NM_001320954 7775 Hs.279914 NM_014519 ENSG00000167840 ZNF232 ZSCAN11 zinc finger protein 232 protein-coding 345-60 chr10 51627131 51627341 + 2 NA intron (NM_001098512, intron 3 of 17) L2c|LINE|L2 72359 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 419-85 chr14 29910373 29910714 + 2 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 16553 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 332-512 chr8 29359317 29359550 + 2 NA Intergenic LTR102_Mam|LTR|ERVL -8749 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 317-154 chr14 78861951 78862204 + 2 NA intron (NM_004796, intron 7 of 16) L2a|LINE|L2 -337905 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 409-128 chr2 4229202 4229451 + 2 NA Intergenic Intergenic 255165 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 236-363 chr8 120579880 120580097 + 2 NA intron (NM_021021, intron 3 of 6) MIR3|SINE|MIR 134569 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 413-99 chr15 79875992 79876300 + 2 NA intron (NR_037654, intron 2 of 2) L1M4a1|LINE|L1 20851 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 372-159 chr14 96347699 96347980 + 2 NA intron (NM_018036, intron 1 of 41) L1MA3|LINE|L1 15502 NM_018036 55102 Hs.168241 NM_018036 ENSG00000066739 ATG2B C14orf103 autophagy related 2B protein-coding 338-260 chr2 66195034 66195229 + 2 NA Intergenic Intergenic 163197 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 471-130 chr2 48281350 48281777 + 2 NA Intergenic L1ME3C|LINE|L1 -33119 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 668-106 chr8 119328549 119329118 + 2 NA Intergenic L1MA3|LINE|L1 3662 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 312-172 chr15 100270789 100270981 + 2 NA intron (NM_139057, intron 4 of 21) L1MB3|LINE|L1 71090 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 194-3 chr1 20033767 20033953 + 2 NA Intergenic LTR46-int|LTR|ERV1 -36334 NM_000929 5322 Hs.319438 NM_000929 ENSG00000127472 PLA2G5 FRFB|GV-PLA2|PLA2-10|hVPLA(2) phospholipase A2 group V protein-coding 349-396 chr4 188689782 188689972 + 2 NA Intergenic Intergenic -86780 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 266-427 chr8 109034607 109034791 + 2 NA Intergenic L1ME3F|LINE|L1 -51929 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 341-520 chr8 64508631 64508893 + 2 NA Intergenic AluJb|SINE|Alu 68501 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 501-14 chr1 202358909 202359238 + 2 NA intron (NM_002481, intron 1 of 23) L1MC5|LINE|L1 10371 NM_001167857 4660 Hs.444403 NM_002481 ENSG00000077157 PPP1R12B MYPT2|PP1bp55 protein phosphatase 1 regulatory subunit 12B protein-coding 200-56 chr12 64433754 64433889 + 2 NA intron (NM_007235, intron 19 of 24) intron (NM_007235, intron 19 of 24) -18299 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 261-241 chr3 77861906 77862105 + 2 NA Intergenic Intergenic 186958 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 335-123 chr12 33780368 33780677 + 2 NA Intergenic L1MC1|LINE|L1 -241974 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 393-145 chr18 71812355 71812586 + 2 NA Intergenic L1MB7|LINE|L1 -30244 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 436-61 chr12 29049327 29049667 + 2 NA Intergenic L1MA4|LINE|L1 -99781 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 534-226 chr6 147889770 147890175 + 2 NA Intergenic L1ME1|LINE|L1 381282 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 353-328 chr3 78084504 78084696 + 2 NA Intergenic Intergenic -35637 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 352-129 chr13 103342944 103343135 + 2 NA Intergenic L1M2|LINE|L1 -82161 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 223-207 chr3 58937943 58938150 + 2 NA intron (NR_147234, intron 4 of 10) intron (NR_147234, intron 4 of 10) 111979 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 366-407 chr7 40223727 40223928 + 2 NA intron (NM_024728, intron 6 of 14) intron (NM_024728, intron 6 of 14) 88851 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 468-314 chr8 87499060 87499474 + 2 NA Intergenic Intergenic 374748 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 621-52 chr2 22419884 22420410 + 2 NA Intergenic L1MEd|LINE|L1 -116332 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 250-190 chr2 22642499 22642685 + 2 NA Intergenic L2c|LINE|L2 106113 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 310-390 chr5 7014035 7014274 + 2 NA Intergenic Intergenic -186233 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 299-149 chr15 48521029 48521265 + 2 NA intron (NM_000138, intron 9 of 65) intron (NM_000138, intron 9 of 65) 124641 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 290-104 chr12 34420492 34420773 + 2 NA Intergenic ALR/Alpha|Satellite|centr 398136 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 354-197 chr2 6322345 6322552 + 2 NA Intergenic L1PA6|LINE|L1 52974 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 235-172 chr2 78089546 78089716 + 2 NA intron (NR_110287, intron 1 of 5) intron (NR_110287, intron 1 of 5) 901 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 429-8 chr1 88244828 88245239 + 2 NA Intergenic L1MEg|LINE|L1 -439111 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 330-334 chr21 46061621 46061860 + 2 NA Intergenic LTR8A|LTR|ERV1 -36372 NM_058174 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 597-57 chr17 22738798 22739256 + 2 NA Intergenic ALR/Alpha|Satellite|centr 215916 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 261-395 chr8 136788611 136788858 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 257936 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 139-68 chr5 28587725 28587802 + 2 NA Intergenic Intergenic -300098 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 340-311 chr20 19581124 19581423 + 2 NA intron (NM_020689, intron 4 of 16) intron (NM_020689, intron 4 of 16) -296677 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 229-274 chr4 66986019 66986170 + 2 NA Intergenic L1PA10|LINE|L1 435906 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 323-456 chr6 48556875 48557084 + 2 NA Intergenic Intergenic -488290 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 230-401 chrX 10940264 10940401 + 2 NA Intergenic L2a|LINE|L2 -106649 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 287-12 chr1 75994540 75994762 + 2 NA Intergenic Intergenic -16673 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 895-15 chr18 71544914 71545630 + 2 NA intron (NR_038326, intron 2 of 4) Tigger1|DNA|TcMar-Tigger 33684 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 400-212 chr3 55829445 55829752 + 2 NA intron (NR_132749, intron 13 of 17) AluJb|SINE|Alu 22996 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 414-6 chr1 64961875 64962282 + 2 NA intron (NM_001321853, intron 2 of 26) intron (NM_001321853, intron 2 of 26) 4471 NM_002227 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 241-419 chr9 9382060 9382233 + 2 NA intron (NM_002839, intron 9 of 45) L1M3|LINE|L1 -417246 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 325-257 chr2 38204851 38205152 + 2 NA Intergenic Intergenic 73896 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 494-320 chrX 58090765 58091153 + 2 NA Intergenic HSAT4|Satellite|centr -180326 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 511-18 chr10 9123427 9123770 + 2 NA Intergenic Intergenic -152015 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 357-259 chr3 17145561 17145789 + 2 NA Intergenic Intergenic 212479 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 602-144 chrX 88919552 88919957 + 2 NA Intergenic MLT1E2-int|LTR|ERVL-MaLR 172529 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 215-283 chr6 168283707 168283901 + 2 NA Intergenic Intergenic 35973 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 510-180 chr3 6546008 6546485 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 259203 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 844-74 chr9 93767119 93767690 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -51953 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 440-176 chr4 27922112 27922391 + 2 NA Intergenic Intergenic 704772 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 791-2 chr1 79027588 79028092 + 2 NA Intergenic Intergenic -21110 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 206-103 chr19 50040902 50041046 + 2 NA intron (NM_015428, intron 3 of 4) MLT1D|LTR|ERVL-MaLR -9615 NR_138096 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 526-73 chr14 37107151 37107501 + 2 NA intron (NM_001171170, intron 1 of 10) AluJr|SINE|Alu -64700 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 337-498 chr6 119256953 119257240 + 2 NA intron (NM_005907, intron 5 of 12) intron (NM_005907, intron 5 of 12) 92665 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 327-111 chr12 28412061 28412296 + 2 NA intron (NM_001352082, intron 9 of 13) Tigger3c|DNA|TcMar-Tigger -221440 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 256-410 chr8 62221203 62221437 + 2 NA Intergenic L1MA9|LINE|L1 -27534 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 296-475 chr8 104247578 104247758 + 2 NA intron (NR_145711, intron 18 of 21) L2a|LINE|L2 24333 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 392-96 chr15 64946141 64946443 + 2 NA intron (NM_182703, intron 12 of 14) MamRep1151|LTR?|LTR? 34390 NM_182703 348094 Hs.207157 NM_182703 ENSG00000166839 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 285-469 chrX 116272953 116273151 + 2 NA Intergenic L2c|LINE|L2 102308 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 191-34 chr12 3228993 3229130 + 2 NA intron (NM_001168320, intron 2 of 7) MLT1C|LTR|ERVL-MaLR 137061 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 330-182 chr16 20227894 20228127 + 2 NA Intergenic L1PA16|LINE|L1 99503 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 402-62 chr12 42128780 42129023 + 2 NA intron (NM_001099650, intron 1 of 6) AluJr|SINE|Alu 15973 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 381-51 chr10 65964001 65964282 + 2 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 392716 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 287-81 chr11 20798078 20798306 + 2 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 128606 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 393-196 chr20 13682559 13682933 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -43810 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 202-178 chr3 178749027 178749187 + 2 NA non-coding (NR_126560, exon 4 of 8) non-coding (NR_126560, exon 4 of 8) 111298 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 633-92 chr4 114923173 114923571 + 2 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 190248 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 468-127 chr19 12261209 12261588 + 2 NA Intergenic AluJr4|SINE|Alu 33214 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 140-57 chr4 186088616 186088689 + 2 NA Intergenic Intergenic -16052 NM_001367768 25854 Hs.744961 NM_015398 ENSG00000109794 FAM149A MST119|MSTP119 family with sequence similarity 149 member A protein-coding 325-549 chr8 120858633 120858876 + 2 NA Intergenic MIRb|SINE|MIR -46708 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 240-352 chr5 58504863 58505035 + 2 NA Intergenic Intergenic 13514 NM_001304429 202309 Hs.547697 NM_152687 ENSG00000175857 GAPT C5orf29 GRB2 binding adaptor protein, transmembrane protein-coding 687-4 chr1 34232261 34232928 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack 55687 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 379-229 chr3 193976161 193976458 + 2 NA intron (NR_033944, intron 1 of 2) intron (NR_033944, intron 1 of 2) 17929 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 318-546 chr8 87444188 87444387 + 2 NA Intergenic Intergenic 429728 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 231-389 chrX 145741523 145741717 + 2 NA Intergenic Intergenic -76209 NM_001144003 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 220-363 chr8 77438532 77438674 + 2 NA Intergenic L1PBa|LINE|L1 -12094 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 215-305 chr7 124341102 124341278 + 2 NA intron (NR_110180, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 10906 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 276-464 chr8 128447040 128447297 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 117511 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 468-236 chr5 8078780 8079094 + 2 NA Intergenic Intergenic 209789 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 450-266 chr6 117019918 117020264 + 2 NA Intergenic L1MEf|LINE|L1 142849 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 412-296 chr7 3016696 3016936 + 2 NA intron (NM_001324281, intron 1 of 25) AluSq2|SINE|Alu 27051 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 267-109 chr14 60200234 60200493 + 2 NA Intergenic L1MA3|LINE|L1 -30499 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 487-8 chr1 57970509 57970922 + 2 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 110134 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 316-561 chr8 118918465 118918669 + 2 NA Intergenic L1MD3|LINE|L1 33318 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 304-166 chr15 73963746 73963955 + 2 NA Intergenic L1MCc|LINE|L1 28445 NM_001256672 9399 Hs.194816 NM_004809 ENSG00000067221 STOML1 SLP-1|STORP|hUNC-24 stomatin like 1 protein-coding 313-257 chr2 68100278 68100520 + 2 NA Intergenic L1MB8|LINE|L1 -37395 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 279-274 chr3 123198675 123198939 + 2 NA Intergenic L1MEf|LINE|L1 -3136 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 319-95 chr11 89174521 89174693 + 2 NA Intergenic L2b|LINE|L2 -3268 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 223-325 chr7 95014465 95014683 + 2 NA intron (NM_017650, intron 2 of 15) L1MC4|LINE|L1 104676 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 282-472 chr8 138710909 138711121 + 2 NA intron (NM_152888, intron 30 of 64) intron (NM_152888, intron 30 of 64) 203026 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 258-355 chr6 162078929 162079155 + 2 NA intron (NM_004562, intron 4 of 11) Tigger15a|DNA|TcMar-Tigger 608065 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 206-238 chr6 71482812 71482925 + 2 NA Intergenic Intergenic 61841 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 422-118 chr17 77622231 77622473 + 2 NA Intergenic AluJr|SINE|Alu 75411 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 402 chr1 5328616 5328863 + 2 NA Intergenic Intergenic 534002 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 118-68 chr9 102358078 102358168 + 2 NA Intergenic Intergenic -161514 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 236-185 chr2 139626807 139626952 + 2 NA Intergenic Intergenic 729555 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 244-88 chr14 36624570 36624702 + 2 NA Intergenic LTR33|LTR|ERVL -32932 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 305-385 chr4 61692051 61692265 + 2 NA intron (NM_001371342, intron 4 of 20) MIRb|SINE|MIR 469607 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 256-79 chr12 13175151 13175349 + 2 NA Intergenic Intergenic -21476 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 414-9 chr1 78796931 78797184 + 2 NA Intergenic LTR75B|LTR|ERVL 147226 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 226-375 chr9 27222087 27222220 + 2 NA intron (NM_001290077, intron 20 of 21) L1PA7|LINE|L1 60640 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 505-119 chr18 59172812 59173248 + 2 NA Intergenic L1MEc|LINE|L1 33146 NM_001307941 90701 Hs.45107 NM_033280 ENSG00000166562 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C, signal peptidase complex subunit protein-coding 467-271 chr7 79361823 79362224 + 2 NA intron (NM_001301128, intron 1 of 20) L1MDa|LINE|L1 -90934 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 445-119 chr2 57924351 57924590 + 2 NA intron (NM_001288838, intron 1 of 15) L1MA3|LINE|L1 16819 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 243-132 chr14 66441872 66442088 + 2 NA Intergenic (TTAA)n|Simple_repeat|Simple_repeat -44391 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 592-181 chr8 138275320 138275707 + 2 NA intron (NM_015912, intron 3 of 19) AluJr|SINE|Alu -191968 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 353-406 chr5 44611611 44611898 + 2 NA Intergenic Intergenic -101472 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 289-140 chr14 66161090 66161343 + 2 NA Intergenic MIR|SINE|MIR -325155 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 255-413 chr8 49746073 49746275 + 2 NA Intergenic L1M4c|LINE|L1 -163622 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 403-92 chr14 42905673 42906033 + 2 NA Intergenic Intergenic 1298997 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 447-247 chr7 51204932 51205210 + 2 NA intron (NM_015198, intron 2 of 12) L1MA9|LINE|L1 111738 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 301-395 chr6 61629342 61629531 + 2 NA TTS (NR_146871) TTS (NR_146871) 55306 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 226-274 chr5 17862237 17862400 + 2 NA intron (NR_134286, intron 4 of 7) LTR85b|LTR|Gypsy? 55044 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 262-9 chr1 73338337 73338583 + 2 NA non-coding (NR_110676, exon 4 of 4) non-coding (NR_110676, exon 4 of 4) 32290 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 384-260 chr4 58186318 58186622 + 2 NA Intergenic Intergenic 349858 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 287-454 chrX 107620562 107620771 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -7758 NM_001204402 5631 Hs.56 NM_002764 ENSG00000147224 PRPS1 ARTS|CMTX5|DFN2|DFNX1|PPRibP|PRS-I|PRSI phosphoribosyl pyrophosphate synthetase 1 protein-coding 192-125 chr20 60837403 60837558 + 2 NA Intergenic Intergenic -241584 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 336-345 chr21 34168327 34168537 + 2 NA Intergenic L1MEj|LINE|L1 -12245 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 342-52 chr10 12952525 12952852 + 2 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 49025 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 215-44 chr10 130054380 130054532 + 2 NA Intergenic L1MB1|LINE|L1 -51553 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 328-147 chr14 48558300 48558596 + 2 NA Intergenic MER51-int|LTR|ERV1 -763434 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 300-66 chr11 45714825 45715015 + 2 NA Intergenic AluSx|SINE|Alu -7388 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 366-166 chr17 57208085 57208339 + 2 NA Intergenic Intergenic -47639 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 297-363 chr5 30109194 30109461 + 2 NA Intergenic MLT2B2|LTR|ERVL 228767 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 329-173 chr14_GL000225v1_random 19178 19473 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 349-346 chr3 153948643 153948938 + 2 NA Intergenic Intergenic -172213 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 321-20 chr1 115275982 115276289 + 2 NA Intergenic CR1-3_Croc|LINE|CR1 -6899 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 353-269 chr2 199549956 199550155 + 2 NA Intergenic Intergenic -58013 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 346-532 chr9 110786936 110787238 + 2 NA intron (NM_001369398, intron 7 of 8) AluY|SINE|Alu 58825 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 485-231 chr5 106677934 106678327 + 2 NA Intergenic L1PA16|LINE|L1 332884 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 333-390 chr4 61140113 61140401 + 2 NA Intergenic Intergenic -3399 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 306-300 chr3 22316472 22316672 + 2 NA Intergenic Intergenic 359433 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 382-333 chr5 91645753 91646010 + 2 NA Intergenic Intergenic -262564 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 614-149 chrX 62848653 62849049 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 502481 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 311-349 chr3 110821026 110821269 + 2 NA Intergenic L1ME1|LINE|L1 248812 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 291-216 chr2 67569964 67570169 + 2 NA Intergenic Intergenic 172733 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 505-141 chr2 46800115 46800459 + 2 NA Intergenic Intergenic -16381 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 185-162 chr5 51370311 51370464 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 12945 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 252-398 chr7 47518348 47518584 + 2 NA intron (NM_022748, intron 2 of 30) intron (NM_022748, intron 2 of 30) -53663 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 302-115 chr13 71375310 71375510 + 2 NA Intergenic Intergenic 360269 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 705-13 chr11 18198060 18198706 + 2 NA Intergenic AluJr|SINE|Alu -10755 NR_026564 494141 Hs.446327 NR_026541 ENSG00000189332 SLC25A51P4 - SLC25A51 pseudogene 4 pseudo 171-63 chr2 191760365 191760454 + 2 NA Intergenic L1ME4a|LINE|L1 -32431 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 247-337 chr5 117748850 117748994 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 18561 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 359-387 chr5 39330616 39330939 + 2 NA intron (NM_001737, intron 5 of 10) intron (NM_001737, intron 5 of 10) 33718 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 509-156 chr3 144558290 144558627 + 2 NA Intergenic Intergenic 585377 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 262-86 chr11 95736760 95736919 + 2 NA Intergenic Intergenic 52943 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 307-385 chr5 61126261 61126481 + 2 NA intron (NM_174889, intron 3 of 3) intron (NM_174889, intron 3 of 3) -35945 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 402-320 chr7 63984447 63984653 + 2 NA Intergenic L1M1|LINE|L1 -14256 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 230-193 chr2 209226869 209227065 + 2 NA Intergenic Intergenic -197080 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 328-253 chr2 50282973 50283173 + 2 NA intron (NM_001330093, intron 17 of 22) L2b|LINE|L2 64681 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 320-439 chr5 43900229 43900421 + 2 NA Intergenic Intergenic -297095 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 390-22 chr1 189796244 189796609 + 2 NA Intergenic L1PA15|LINE|L1 679584 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 321-485 chr5 180730190 180730477 + 2 NA Intergenic Intergenic 9725 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 372-318 chr3 20620637 20620859 + 2 NA Intergenic L1M4c|LINE|L1 278280 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 315-62 chr10 67358849 67359031 + 2 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 44470 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 294-116 chr14 57156516 57156725 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 112285 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 266-257 chr3 101183785 101183980 + 2 NA Intergenic MER21-int|LTR|ERVL 136693 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 283-283 chr3 15695026 15695263 + 2 NA intron (NM_001349280, intron 15 of 26) intron (NM_001349280, intron 15 of 26) 2227 NR_036085 100422990 NR_036085 ENSG00000264354 MIR3134 - microRNA 3134 ncRNA 1237-7 chr5 133720134 133720933 + 2 NA Intergenic Intergenic -107992 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 484-25 chr10 9943848 9944159 + 2 NA Intergenic Intergenic -114719 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 193-199 chr8 112620597 112620757 + 2 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -22816 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 197-80 chr19 8642370 8642500 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -31720 NM_030957 81794 Hs.657508 NM_030957 ENSG00000142303 ADAMTS10 ADAM-TS10|ADAMTS-10|WMS|WMS1 ADAM metallopeptidase with thrombospondin type 1 motif 10 protein-coding 579-150 chr7 16518378 16518817 + 2 NA Intergenic Intergenic -8228 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 366-223 chr2 143710795 143711045 + 2 NA intron (NM_018460, intron 13 of 13) MIRc|SINE|MIR -226147 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 236-218 chr3 46767285 46767511 + 2 NA Intergenic L1MA9|LINE|L1 -10543 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 286-292 chr3 116495933 116496132 + 2 NA Intergenic L1ME2|LINE|L1 -50545 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 468-166 chr2 168006393 168006763 + 2 NA intron (NM_013233, intron 16 of 17) intron (NM_013233, intron 16 of 17) -65434 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 118-67 chr9 70989262 70989372 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -120265 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 118-49 chr6 124664406 124664477 + 2 NA intron (NM_001040214, intron 4 of 6) Charlie2a|DNA|hAT-Charlie -298104 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 264-445 chr9 98338844 98338994 + 2 NA intron (NM_005458, intron 13 of 18) L1MB7|LINE|L1 -83270 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 386-18 chr1 208222575 208222777 + 2 NA intron (NM_025179, intron 1 of 31) intron (NM_025179, intron 1 of 31) 21708 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 353-25 chr1 118255849 118256062 + 2 NA Intergenic Intergenic -70727 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 398-273 chr5 83010198 83010564 + 2 NA Intergenic Intergenic 53956 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 357-467 chr8 137982366 137982700 + 2 NA intron (NR_161374, intron 2 of 7) LTR50|LTR|ERVL 101012 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 337-458 chr5 109575147 109575355 + 2 NA Intergenic L2|LINE|L2 -114115 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 345-442 chr5 135479520 135479753 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -27285 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 332-446 chr5 179440691 179440972 + 2 NA Intergenic Intergenic 75880 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 442-107 chr17 74549601 74549876 + 2 NA Intergenic Intergenic -3623 NM_006678 10871 Hs.2605 NM_006678 ENSG00000167850 CD300C CLM-6|CMRF-35|CMRF-35A|CMRF35|CMRF35-A1|CMRF35A|CMRF35A1|IGSF16|LIR CD300c molecule protein-coding 256-265 chr3 99220401 99220592 + 2 NA Intergenic L1MA3|LINE|L1 -318801 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 331-450 chr6 39994816 39995000 + 2 NA Intergenic HERV3-int|LTR|ERV1 -60446 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 356-490 chr8 130186824 130187099 + 2 NA intron (NM_001362925, intron 7 of 29) intron (NM_001362925, intron 7 of 29) -102193 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 342-437 chr5 167241103 167241306 + 2 NA intron (NM_001122679, intron 1 of 29) L2c|LINE|L2 -72803 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 240-342 chr5 20273539 20273696 + 2 NA intron (NM_001349556, intron 1 of 13) Charlie8|DNA|hAT-Charlie -31934 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 202-64 chr14 26755776 26755948 + 2 NA intron (NR_147061, intron 3 of 6) intron (NR_147061, intron 3 of 6) -53486 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 362-247 chr20 31932374 31932676 + 2 NA intron (NR_148013, intron 10 of 16) intron (NR_148013, intron 10 of 16) 19521 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 514-180 chr3 21713954 21714354 + 2 NA intron (NM_024697, intron 1 of 7) L2a|LINE|L2 37056 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 358-281 chr22 41317779 41317972 + 2 NA intron (NM_017590, intron 1 of 22) intron (NM_017590, intron 1 of 22) -15506 NM_001317930 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 652-122 chr8 140078541 140079141 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 21694 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 344-498 chr8 118999923 119000186 + 2 NA intron (NM_001324095, intron 1 of 7) L2|LINE|L2 47791 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 331-394 chr4 126585401 126585669 + 2 NA Intergenic L1PA15-16|LINE|L1 -1047422 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 240-364 chr5 156485075 156485290 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 158018 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 198-32 chr10 130597921 130598102 + 2 NA Intergenic L1ME1|LINE|L1 364657 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 250-27 chr1 201754858 201755037 + 2 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 15047 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 367-3 chr1 5323219 5323472 + 2 NA Intergenic L1ME4a|LINE|L1 539396 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 274-55 chr10 109098468 109098673 + 2 NA Intergenic Intergenic 824676 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 328-291 chr2 183812647 183812822 + 2 NA Intergenic Intergenic -566241 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 285-126 chr14 83253029 83253246 + 2 NA Intergenic Intergenic 610505 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 302-422 chr7 108856078 108856343 + 2 NA Intergenic Intergenic 28377 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 342-196 chr17 71853401 71853627 + 2 NA Intergenic L1ME4b|LINE|L1 172465 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 189-179 chr6 65643044 65643202 + 2 NA intron (NM_001292009, intron 1 of 43) L1PB1|LINE|L1 -63319 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 342-81 chr10 113394057 113394314 + 2 NA Intergenic Intergenic -156646 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 328-93 chr11 103696568 103696746 + 2 NA Intergenic L1ME4b|LINE|L1 -153249 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 420-225 chr5 40878314 40878603 + 2 NA Intergenic AluY|SINE|Alu -31039 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 402-198 chr22 28265506 28265799 + 2 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -194217 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 311-317 chr21 30012232 30012514 + 2 NA Intergenic Intergenic -72321 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 339-10 chr1 57326396 57326575 + 2 NA intron (NM_001353980, intron 4 of 5) MER103C|DNA|hAT-Charlie 96627 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 204-133 chr19 52429775 52429956 + 2 NA intron (NM_001143939, intron 1 of 4) AluSq2|SINE|Alu 717 NM_001351679 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 377-60 chr11 5257874 5258088 + 2 NA Intergenic Intergenic -3200 NM_000184 3048 Hs.302145 NM_000184 ENSG00000196565 HBG2 HBG-T1|TNCY hemoglobin subunit gamma 2 protein-coding 455-103 chr18 6001240 6001647 + 2 NA intron (NR_158609, intron 15 of 17) L1M4|LINE|L1 -105489 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 294-416 chr6 125479247 125479528 + 2 NA Intergenic Intergenic -177420 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 189-138 chr4 36311522 36311662 + 2 NA intron (NM_001170700, intron 7 of 9) intron (NM_001170700, intron 7 of 9) 29976 NM_001170700 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 727-44 chr19 31435848 31436419 + 2 NA Intergenic Intergenic -86697 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 223-89 chr14 71313273 71313482 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -7099 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 492-238 chr7 16092453 16092837 + 2 NA intron (NM_001101426, intron 9 of 9) L2c|LINE|L2 -117841 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 246-403 chr8 88602365 88602564 + 2 NA Intergenic Intergenic -274981 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 298-358 chr5 29849219 29849500 + 2 NA Intergenic L1MEg|LINE|L1 -31201 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 910-15 chr16 13514479 13515101 + 2 NA Intergenic L1MEc|LINE|L1 -405367 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 262-222 chr2 132380455 132380652 + 2 NA Intergenic Intergenic 27886 NR_135203 339742 Hs.98178 NR_135203 FAM201B - family with sequence similarity 201 member B ncRNA 394-340 chr9 86195666 86195933 + 2 NA Intergenic AluSx|SINE|Alu 60234 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 332-456 chr6 62940093 62940396 + 2 NA Intergenic Intergenic 379733 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 402-177 chr2 187159273 187159525 + 2 NA Intergenic Intergenic 288853 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 292-420 chr7 143122564 143122838 + 2 NA intron (NM_001130026, intron 9 of 10) MER101-int|LTR|ERV1 -9376 NM_002652 5304 Hs.99949 NM_002652 ENSG00000159763 PIP GCDFP-15|GCDFP15|GPIP4 prolactin induced protein protein-coding 296-42 chr10 34984504 34984758 + 2 NA Intergenic L1ME3B|LINE|L1 89652 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 204-284 chr8 81783199 81783379 + 2 NA Intergenic Intergenic 50841 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 333-225 chr2 22308371 22308575 + 2 NA Intergenic L1MD|LINE|L1 -228006 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 425-164 chr20 40092400 40092734 + 2 NA Intergenic AluJb|SINE|Alu 88106 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 292-177 chr17 81267581 81267826 + 2 NA intron (NM_001037984, intron 10 of 15) L1MEg|LINE|L1 27604 NM_138570 124565 Hs.352240 NM_138570 ENSG00000157637 SLC38A10 PP1744 solute carrier family 38 member 10 protein-coding 237-55 chr11 44177195 44177356 + 2 NA intron (NM_207122, intron 8 of 13) intron (NM_207122, intron 8 of 13) 81078 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 254-337 chr5 178886725 178886904 + 2 NA Intergenic Intergenic -9099 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 381-111 chr15 24913069 24913370 + 2 NA intron (NM_001349455, intron 3 of 12) AluSx|SINE|Alu -41674 NM_001349463 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 513-16 chr1 222361640 222362137 + 2 NA Intergenic L3|LINE|CR1 186216 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 232-186 chr2 128908372 128908560 + 2 NA Intergenic L1MC3|LINE|L1 43866 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 152-37 chr17 71427406 71427523 + 2 NA Intergenic Intergenic -225285 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 177-35 chr12 14891677 14891840 + 2 NA Intergenic Intergenic -5904 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 270-318 chr5 129575549 129575798 + 2 NA intron (NM_133638, intron 7 of 22) intron (NM_133638, intron 7 of 22) -114984 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 320-380 chr4 34332910 34333163 + 2 NA Intergenic Intergenic -63289 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 366-235 chr2 181335745 181336102 + 2 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) -30271 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 372-164 chr15 60261716 60261930 + 2 NA Intergenic L2c|LINE|L2 136163 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 299-87 chr11 112441544 112441715 + 2 NA Intergenic Intergenic -40603 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 284-14 chr1 98822995 98823147 + 2 NA Intergenic L1ME4c|LINE|L1 161350 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 335-551 chr8 134313899 134314190 + 2 NA Intergenic MIRc|SINE|MIR -284027 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 163-44 chr14 28739903 28740037 + 2 NA intron (NR_125758, intron 3 of 6) intron (NR_125758, intron 3 of 6) 25349 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 283-266 chr20 50890828 50891006 + 2 NA 3' UTR (NM_181442, exon 4 of 4) 3' UTR (NM_181442, exon 4 of 4) 18874 NM_001282532 23394 Hs.293736 NM_015339 ENSG00000101126 ADNP ADNP1|HVDAS|MRD28 activity dependent neuroprotector homeobox protein-coding 373-114 chr14 70142036 70142363 + 2 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -44909 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 116-27 chr3 73889807 73889898 + 2 NA Intergenic L2b|LINE|L2 80608 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 354-83 chr11 80457102 80457420 + 2 NA Intergenic Intergenic 305542 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 213-185 chr3 145654314 145654494 + 2 NA Intergenic L1MC1|LINE|L1 414781 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 381-3 chr1 28386651 28386895 + 2 NA intron (NM_001048183, intron 1 of 13) intron (NM_001048183, intron 1 of 13) 17033 NM_001350159 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 351-54 chr10 119965324 119965636 + 2 NA Intergenic L1M5|LINE|L1 6967 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 393-277 chr5 59417416 59417632 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -60554 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 232-230 chr22 46555028 46555185 + 2 NA Intergenic Intergenic -17486 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 261-385 chr8 113983822 113984030 + 2 NA Intergenic L1PA16|LINE|L1 -546987 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 337-33 chr1 218392578 218392817 + 2 NA intron (NR_138149, intron 2 of 7) intron (NR_138149, intron 2 of 7) -44936 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 195-267 chrX 155441894 155442024 + 2 NA Intergenic L1MA4A|LINE|L1 -15558 NR_036260 100422977 NR_036260 ENSG00000221603 MIR1184-3 - microRNA 1184-3 ncRNA 449-70 chr13 99709967 99710368 + 2 NA intron (NR_104592, intron 1 of 9) AluYc3|SINE|Alu 18834 NR_120384 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 216-40 chr10 82441926 82442077 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -209081 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 350-204 chr2 2964332 2964551 + 2 NA intron (NR_110228, intron 5 of 6) L1PA16|LINE|L1 161585 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 294-354 chr5 2706839 2707079 + 2 NA Intergenic Intergenic -5632 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 470-133 chr2 102215924 102216313 + 2 NA intron (NM_001351447, intron 4 of 9) L1M2c|LINE|L1 28804 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 334-426 chr5 75946044 75946299 + 2 NA Intergenic L1MD|LINE|L1 -137212 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 342-559 chr9 103143209 103143539 + 2 NA intron (NR_121578, intron 9 of 9) intron (NR_121578, intron 9 of 9) 148041 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 479-251 chr8 107936586 107937063 + 2 NA intron (NM_001282863, intron 4 of 4) L1MA4A|LINE|L1 145115 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 404-34 chr10 43878886 43879148 + 2 NA intron (NR_038268, intron 4 of 4) intron (NR_038268, intron 4 of 4) 19606 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 257-341 chr5 174285477 174285688 + 2 NA Intergenic Intergenic -50772 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 299-493 chr9 135324068 135324342 + 2 NA Intergenic L1MD1|LINE|L1 -19044 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 691-56 chr4 83539080 83539533 + 2 NA intron (NM_001256421, intron 2 of 12) intron (NM_001256421, intron 2 of 12) 3198 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 306-342 chr4 25222868 25223127 + 2 NA Intergenic AluJo|SINE|Alu -11036 NR_144633 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 988-5 chr12 64769397 64770229 + 2 NA intron (NM_001330187, intron 1 of 13) AluSx3|SINE|Alu 10316 NM_001330187 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 272-75 chr11 70037021 70037209 + 2 NA Intergenic Intergenic 26809 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 236-290 chr5 75268188 75268316 + 2 NA Intergenic L1ME3D|LINE|L1 -31374 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 741-79 chr8 128284732 128285181 + 2 NA Intergenic Intergenic 134840 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 189-119 chr22 28103651 28103818 + 2 NA intron (NM_001145418, intron 8 of 22) intron (NM_001145418, intron 8 of 22) -183122 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 410-268 chr6 153350137 153350451 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -219012 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 294-53 chr11 13124738 13124955 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 115530 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 304-36 chr10 10452298 10452517 + 2 NA intron (NR_120637, intron 1 of 3) L1MA4|LINE|L1 9942 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 286-133 chr15 24605267 24605460 + 2 NA Intergenic ERVL47-int|LTR|ERVL 47206 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 258-172 chr18 71238902 71239109 + 2 NA Intergenic MER54B|LTR|ERVL 339951 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 578-102 chr20 40598027 40598466 + 2 NA Intergenic L1ME1|LINE|L1 90990 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 835-57 chr8 113699947 113700532 + 2 NA Intergenic L1MC5|LINE|L1 -263300 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 423-25 chr10 43650497 43650856 + 2 NA intron (NR_038867, intron 1 of 4) L1M5|LINE|L1 -1795 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 328-53 chr10 45496636 45496936 + 2 NA intron (NM_001282866, intron 2 of 7) L1M4b|LINE|L1 38585 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 590-71 chr19 28032459 28032854 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -238716 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 226-377 chr9 32721782 32721948 + 2 NA Intergenic Intergenic -61675 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 263-275 chr4 11511773 11511980 + 2 NA Intergenic Intergenic -82982 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 360-141 chr15 49497561 49497853 + 2 NA intron (NM_001330293, intron 10 of 10) intron (NM_001330293, intron 10 of 10) 74465 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 737-26 chr15 34004236 34004721 + 2 NA intron (NM_020371, intron 1 of 5) L1MC5|LINE|L1 34726 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 454-27 chr10 65816447 65816807 + 2 NA Intergenic L1ME3|LINE|L1 245202 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 457-162 chr3 125446751 125447106 + 2 NA non-coding (NR_073435, exon 13 of 13) non-coding (NR_073435, exon 13 of 13) -71574 NM_001348425 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 446-275 chr7 34743209 34743591 + 2 NA intron (NR_015356, intron 2 of 4) L1PA14|LINE|L1 14872 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 311-418 chr5 109130593 109130858 + 2 NA intron (NR_146155, intron 17 of 19) MER33|DNA|hAT-Charlie 195644 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 356-222 chr19 56981500 56981715 + 2 NA Intergenic Intergenic -138534 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 259-100 chr13 74717162 74717305 + 2 NA Intergenic L1ME1|LINE|L1 164390 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 342-346 chr4 12291797 12292032 + 2 NA Intergenic Intergenic 68463 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 244-100 chr14 73748918 73749136 + 2 NA intron (NM_001043318, intron 1 of 11) L1M4|LINE|L1 -9720 NR_039727 100616158 NR_039727 ENSG00000264741 MIR4505 mir-4505 microRNA 4505 ncRNA 343-241 chr2 63294630 63294943 + 2 NA intron (NR_148704, intron 14 of 18) L1M4c|LINE|L1 143221 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 717-2 chr1 48132181 48132591 + 2 NA intron (NR_026749, intron 7 of 9) L1PB4|LINE|L1 50042 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 238-225 chr22 49143438 49143599 + 2 NA Intergenic L1M5|LINE|L1 276748 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 332-186 chr16 79661557 79661756 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -60919 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 375-164 chr17 34655765 34656112 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 75189 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 481-238 chr5 9792104 9792413 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -62119 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 235-192 chr2 210987995 210988184 + 2 NA Intergenic Intergenic 370518 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 141-2 chr1 43474485 43474586 + 2 NA Intergenic L1MC3|LINE|L1 -20546 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 475-197 chr4 31865975 31866386 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -131199 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 195-174 chr4 125347280 125347428 + 2 NA intron (NM_001291303, intron 1 of 16) intron (NM_001291303, intron 1 of 16) 30942 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 781-66 chr8 126341028 126341565 + 2 NA Intergenic L1PB2|LINE|L1 15801 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 409-104 chr16 58881666 58881963 + 2 NA Intergenic MER57B1|LTR|ERV1 -147498 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 596-155 chr7 80066910 80067357 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -67698 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 486-63 chr12 126117453 126117833 + 2 NA Intergenic Intergenic 21651 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 308-492 chr8 87278181 87278412 + 2 NA intron (NM_173538, intron 6 of 10) L1MEg|LINE|L1 411881 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 438-285 chr8 131665806 131666100 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -238140 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 254-352 chr6 88313444 88313627 + 2 NA Intergenic MIRb|SINE|MIR -146186 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 345-532 chr8 120280570 120280877 + 2 NA exon (NM_021110, exon 30 of 48) exon (NM_021110, exon 30 of 48) 155621 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 273-395 chr6 121802975 121803168 + 2 NA Intergenic Intergenic 367425 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 430-148 chr2 116666633 116667057 + 2 NA Intergenic L1MB7|LINE|L1 -1147846 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 395-212 chr22 31144236 31144549 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -3884 NM_015715 50487 Hs.149623 NM_015715 ENSG00000100078 PLA2G3 GIII-SPLA2|SPLA2III|sPLA2-III phospholipase A2 group III protein-coding 354-223 chr2 129459942 129460125 + 2 NA Intergenic Intergenic -186142 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 205-195 chr3 185406892 185407061 + 2 NA intron (NM_004721, intron 1 of 13) intron (NM_004721, intron 1 of 13) 43840 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 467-188 chr3 153792910 153793273 + 2 NA Intergenic Intergenic -30565 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 281-85 chr12 30303158 30303336 + 2 NA Intergenic L1P4|LINE|L1 373997 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 471-233 chr6 100671332 100671801 + 2 NA intron (NM_006828, intron 14 of 41) intron (NM_006828, intron 14 of 41) -207891 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 342-263 chr2 193902884 193903196 + 2 NA Intergenic L1MC5a|LINE|L1 -441229 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 484-248 chr7 36655454 36655783 + 2 NA intron (NM_001177507, intron 3 of 19) intron (NM_001177507, intron 3 of 19) -55498 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 329-431 chr4 182429872 182430086 + 2 NA intron (NM_001080477, intron 3 of 27) MIRb|SINE|MIR 186577 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 349-107 chr11 110842491 110842719 + 2 NA Intergenic L1ME3D|LINE|L1 -129416 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 254-265 chr4 31176347 31176582 + 2 NA intron (NR_125935, intron 1 of 4) MARNA|DNA|TcMar-Mariner 5320 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 192-10 chr1 161802828 161802965 + 2 NA intron (NM_007348, intron 7 of 15) intron (NM_007348, intron 7 of 15) 36576 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 712-22 chr12 116577706 116578187 + 2 NA Intergenic L1ME3A|LINE|L1 18565 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 263-125 chr15 94528780 94528969 + 2 NA Intergenic L2a|LINE|L2 172944 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 696-8 chr1 221944292 221944716 + 2 NA intron (NR_149057, intron 1 of 3) L1M1|LINE|L1 -21906 NR_149071 110806276 NR_149071 LINC02474 - long intergenic non-protein coding RNA 2474 ncRNA 244-395 chrX 69513624 69513845 + 2 NA intron (NM_015686, intron 1 of 2) L1MB4|LINE|L1 8499 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 442-150 chr2 212471465 212471749 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) -45247 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 242-371 chr7 54084572 54084741 + 2 NA Intergenic Intergenic -246041 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 263-402 chr7 103529861 103530027 + 2 NA intron (NM_005045, intron 46 of 64) L2c|LINE|L2 -83737 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 392-132 chr19 39614589 39614792 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 12166 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 413-6 chr1 54438286 54438649 + 2 NA Intergenic AluSx3|SINE|Alu -32073 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 361-48 chr10 75718717 75719071 + 2 NA intron (NR_132791, intron 1 of 2) intron (NR_132791, intron 1 of 2) 6439 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 314-245 chr18 71118946 71119187 + 2 NA Intergenic L1MC3|LINE|L1 459890 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 239-143 chr18 10407441 10407576 + 2 NA intron (NR_110775, intron 1 of 2) intron (NR_110775, intron 1 of 2) 6862 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 282-282 chr22 39789956 39790177 + 2 NA intron (NM_152512, intron 5 of 6) L2a|LINE|L2 103694 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 236-367 chr8 124227094 124227266 + 2 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 20218 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 641-11 chr10 62140739 62141129 + 2 NA Intergenic AluY|SINE|Alu 91577 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 283-361 chr5 58164293 58164466 + 2 NA Intergenic Intergenic -42038 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 389-170 chr2 65386162 65386450 + 2 NA intron (NM_181784, intron 1 of 5) AluSq2|SINE|Alu -19528 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 482-10 chr1 85122846 85123168 + 2 NA intron (NM_001288563, intron 17 of 21) L2a|LINE|L2 -10787 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 330-375 chr4 42871454 42871678 + 2 NA Intergenic Intergenic -21700 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 564-214 chr9 96786545 96786928 + 2 NA Intergenic Intergenic -8607 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 346-331 chr3 145695270 145695456 + 2 NA Intergenic MIRc|SINE|MIR 373822 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 644-103 chr8 85409741 85410156 + 2 NA Intergenic L1MB7|LINE|L1 -28911 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 540-40 chr11 81887926 81888287 + 2 NA intron (NR_120571, intron 6 of 7) MIRb|SINE|MIR 2730 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 389-369 chr8 121675032 121675229 + 2 NA Intergenic MER4A1_|LTR|ERV1 -33690 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 315-102 chr12 34430091 34430338 + 2 NA Intergenic ALR/Alpha|Satellite|centr 407718 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 308-235 chr2 102013344 102013508 + 2 NA intron (NR_048564, intron 3 of 8) intron (NR_048564, intron 3 of 8) 14465 NR_048564 7850 Hs.25333 NM_004633 ENSG00000115590 IL1R2 CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB interleukin 1 receptor type 2 protein-coding 490-162 chr20 15897728 15898073 + 2 NA intron (NR_130924, intron 1 of 1) L1MEd|LINE|L1 25414 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 326-449 chr6 48387227 48387438 + 2 NA Intergenic L1PBa|LINE|L1 -318643 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 480-108 chr16 87450101 87450382 + 2 NA intron (NM_015144, intron 2 of 12) intron (NM_015144, intron 2 of 12) 41613 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 314-445 chr5 7826331 7826518 + 2 NA intron (NM_020546, intron 24 of 24) intron (NM_020546, intron 24 of 24) 24709 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 291-427 chr8 11512805 11513068 + 2 NA intron (NM_001330465, intron 1 of 11).2 AluSx1|SINE|Alu 18549 NM_001330465 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 379-68 chr12 1876131 1876391 + 2 NA intron (NM_172364, intron 16 of 37).2 L3|LINE|CR1 42391 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 275-364 chr8 109153346 109153563 + 2 NA Intergenic MIRb|SINE|MIR 66826 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 406-119 chr18 38659109 38659435 + 2 NA Intergenic CR1-12_AMi|LINE|CR1 962903 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 342-563 chr9 118814704 118814974 + 2 NA Intergenic MER30|DNA|hAT-Charlie 135168 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 327-74 chr11 19147333 19147597 + 2 NA intron (NM_019028, intron 3 of 16) intron (NM_019028, intron 3 of 16) 30297 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 443-103 chr15 57673889 57674305 + 2 NA intron (NR_104369, intron 11 of 12) intron (NR_104369, intron 11 of 12) -32424 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 144-45 chr2 38393067 38393174 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -14536 NM_001330462 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 502-193 chr4 30147426 30147860 + 2 NA Intergenic L1MA9|LINE|L1 -572726 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 330-76 chr10 118493852 118494024 + 2 NA Intergenic MIR|SINE|MIR 101710 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 446-209 chr4 10509582 10509956 + 2 NA intron (NM_052964, intron 16 of 18) AluSq2|SINE|Alu -52343 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 290-243 chr20 20312298 20312487 + 2 NA intron (NM_015585, intron 25 of 26) L1MEc|LINE|L1 -55712 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 268-370 chr7 52166261 52166460 + 2 NA Intergenic Intergenic -773104 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 343-44 chr10 22773757 22774089 + 2 NA Intergenic Intergenic -59345 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 402-14 chr1 189831980 189832295 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 643873 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 688-108 chr8 134325179 134325593 + 2 NA Intergenic Intergenic -272685 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 365-192 chr2 75509839 75510059 + 2 NA intron (NM_032181, intron 3 of 3) L1MC5|LINE|L1 -14119 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 360-172 chr17 71427806 71428093 + 2 NA Intergenic Intergenic -225770 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 269-151 chr16 82566210 82566387 + 2 NA Intergenic L2a|LINE|L2 -60671 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 312-24 chr1 165265685 165265894 + 2 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 90452 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 386-208 chr20 45193349 45193566 + 2 NA Intergenic Intergenic -13576 NM_003007 6406 Hs.1968 NM_003007 ENSG00000124233 SEMG1 CT103|SEMG|SGI|dJ172H20.2 semenogelin 1 protein-coding 645-23 chr12 65732416 65732861 + 2 NA Intergenic AluSg|SINE|Alu -90266 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 222-331 chr6 135733625 135733835 + 2 NA Intergenic Intergenic -117971 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 279-348 chr5 154726682 154726959 + 2 NA intron (NM_001367717, intron 1 of 18) THE1D|LTR|ERVL-MaLR 13977 NM_001367717 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 186-62 chr17 52655059 52655184 + 2 NA Intergenic Intergenic -207000 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 140-6 chr10 53959554 53959646 + 2 NA intron (NM_001354411, intron 24 of 34) intron (NM_001354411, intron 24 of 34) -526630 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 453-104 chr19 44227116 44227543 + 2 NA intron (NM_001289167, intron 3 of 5) AluSz|SINE|Alu 14797 NM_182490 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 247-269 chr3 104901772 104901929 + 2 NA Intergenic L1M4c|LINE|L1 -464863 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 267-374 chr6 86246750 86246945 + 2 NA Intergenic Intergenic -568114 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 414-59 chr12 4001849 4002170 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -128561 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 475-291 chr8 136219822 136220181 + 2 NA Intergenic Intergenic -310797 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 698-65 chr4 97531599 97532231 + 2 NA Intergenic L1MA2|LINE|L1 164989 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 205-75 chr14 25700915 25701092 + 2 NA Intergenic MIR|SINE|MIR -650706 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 184-47 chr12 112984955 112985098 + 2 NA intron (NM_002535, intron 1 of 9) L1MA4|LINE|L1 6507 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 395-306 chr7 18370872 18371092 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) 80890 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 154-43 chr18 64610808 64610926 + 2 NA Intergenic L2|LINE|L2 -350812 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 480-62 chr13 81431793 81432199 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -205013 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 246-442 chrX 50819409 50819603 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -5462 NM_020717 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 450-56 chr11 111386514 111386900 + 2 NA Intergenic Intergenic -7432 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 199-164 chr3 103628525 103628711 + 2 NA Intergenic L1MA4|LINE|L1 -104502 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 339-24 chr1 152367720 152367981 + 2 NA Intergenic Intergenic -7844 NM_001014342 388698 Hs.156124 NM_001014342 ENSG00000143520 FLG2 IFPS|PSS6 filaggrin family member 2 protein-coding 206-163 chr3 78471781 78471942 + 2 NA Intergenic L1PA16|LINE|L1 -422898 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 397-344 chr8 123301208 123301560 + 2 NA Intergenic L1MB3|LINE|L1 -25843 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 889-23 chr2 228933121 228933801 + 2 NA Intergenic L1M4c|LINE|L1 298631 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 284-362 chr6 159300887 159301082 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -82547 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 505-190 chr3 21878227 21878596 + 2 NA Intergenic Intergenic -78728 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 748-22 chr11 70901736 70902296 + 2 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -29648 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 381-141 chr17 59541981 59542300 + 2 NA Intergenic Intergenic -15283 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 336-206 chr17 11871137 11871432 + 2 NA intron (NM_001372, intron 51 of 68) MIRb|SINE|MIR -11618 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 422-287 chr7 102899189 102899536 + 2 NA intron (NR_105043, intron 12 of 20) intron (NR_105043, intron 12 of 20) -13638 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 255-242 chr21 43199861 43200038 + 2 NA Intergenic Intergenic 29713 NM_001320719 102724652 Hs.184085 NM_001314050 ENSG00000276076 CRYAA2 CRYAA crystallin alpha A2 protein-coding 159-10 chr10 43638449 43638581 + 2 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -5357 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 192-109 chr2 185892064 185892245 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -92003 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 327-125 chr12 108088300 108088540 + 2 NA Intergenic L1MC3|LINE|L1 -40868 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 203-256 chrX 54322988 54323107 + 2 NA intron (NM_001002838, intron 2 of 22) L1MC4a|LINE|L1 34958 NM_020922 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 223-90 chr14 73269339 73269530 + 2 NA intron (NM_001365907, intron 25 of 25) MER104|DNA|TcMar-Tc2 -23433 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 723-56 chr5 6026120 6026625 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 310920 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 738-60 chr6 150296886 150297408 + 2 NA Intergenic LTR8B|LTR|ERV1 -71865 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 396-19 chr1 110238592 110238889 + 2 NA 3' UTR (NM_004978, exon 4 of 4) 3' UTR (NM_004978, exon 4 of 4) 28426 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 265-408 chr9 13785954 13786151 + 2 NA Intergenic Intergenic -141919 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 350-101 chr12 71040953 71041204 + 2 NA Intergenic L2c|LINE|L2 116731 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 428-115 chr2 11409753 11410008 + 2 NA Intergenic MIRb|SINE|MIR 15899 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 330-450 chr5 171767446 171767613 + 2 NA Intergenic HAL1M8|LINE|L1 -18343 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 566-32 chr12 47466582 47466940 + 2 NA Intergenic L1PA7|LINE|L1 51753 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 542-211 chr7 149346948 149347295 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 61840 NR_036573 155060 Hs.490512 NR_015357 ENSG00000244560 LOC155060 - AI894139 pseudogene pseudo 359-135 chr14 28362997 28363321 + 2 NA Intergenic MamRep1151|LTR?|LTR? 402160 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 225-205 chr3 67581188 67581347 + 2 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 73347 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 427-176 chr4 47362407 47362778 + 2 NA intron (NM_000812, intron 5 of 8) L4_A_Mam|LINE|RTE-X 101110 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 393-288 chr5 136687927 136688225 + 2 NA Intergenic L1PA15-16|LINE|L1 -322600 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 370-47 chr10 57157562 57157774 + 2 NA Intergenic Intergenic 146891 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 493-310 chr9 10136473 10136803 + 2 NA intron (NM_002839, intron 3 of 45) L1HS|LINE|L1 337246 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 471-211 chr5 95444149 95444452 + 2 NA intron (NM_152548, intron 7 of 9) L2a|LINE|L2 52934 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 399-90 chr14 67981174 67981387 + 2 NA intron (NM_133509, intron 7 of 10) L1MA6|LINE|L1 157688 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 345-101 chr11 111067692 111067930 + 2 NA Intergenic L1MA9|LINE|L1 29507 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 219-64 chr12 13858922 13859120 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 121335 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 304-309 chr21 26175900 26176166 + 2 NA Intergenic Intergenic -4905 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 278-164 chr18 374090 374269 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -106132 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 516-55 chr12 116521775 116522185 + 2 NA Intergenic AluSx|SINE|Alu -11442 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 331-411 chr5 24179580 24179750 + 2 NA Intergenic L1M3|LINE|L1 228317 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 394-219 chr3 103343489 103343802 + 2 NA Intergenic Intergenic 180471 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 218-155 chr2 79810374 79810547 + 2 NA intron (NM_001282598, intron 3 of 17) THE1A|LTR|ERVL-MaLR 56123 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 235-399 chr9 115502684 115502895 + 2 NA Intergenic L1ME3D|LINE|L1 241450 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 695-98 chr7 64644240 64644636 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -21645 NM_001282359 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 274-383 chr8 77272343 77272614 + 2 NA Intergenic Tigger1a_Art|DNA|TcMar-Tigger -178219 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 248-384 chr7 86872139 86872372 + 2 NA Intergenic L1MA7|LINE|L1 93644 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 323-540 chr8 70413497 70413751 + 2 NA Intergenic Intergenic -9407 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 497-54 chr12 26545557 26546012 + 2 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 287410 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 183-96 chr3 102135080 102135253 + 2 NA Intergenic Intergenic -28539 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 382-256 chr3 6693783 6694036 + 2 NA intron (NR_110123, intron 2 of 3) L1MDa|LINE|L1 111540 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 358-73 chr11 81583648 81583947 + 2 NA Intergenic Intergenic 307039 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 409-103 chr16 47343148 47343429 + 2 NA intron (NM_030790, intron 8 of 17) L1MB4|LINE|L1 117775 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 394-131 chr16 82721996 82722300 + 2 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 33217 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 369-289 chr4 45799687 45799959 + 2 NA Intergenic L1MCa|LINE|L1 324231 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 796-20 chr16 73648674 73649274 + 2 NA Intergenic Intergenic 262169 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 306-218 chr19 56529183 56529446 + 2 NA 3' UTR (NM_020813, exon 5 of 5) 3' UTR (NM_020813, exon 5 of 5) -9634 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 340-353 chr3 20646620 20646897 + 2 NA Intergenic Intergenic 304290 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 615-33 chr14 52622455 52622867 + 2 NA intron (NR_148417, intron 4 of 7) Charlie1|DNA|hAT-Charlie 69825 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 322-501 chr7 88229866 88230179 + 2 NA Intergenic L1ME4a|LINE|L1 -3029 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 348-489 chr7 33647087 33647358 + 2 NA Intergenic Intergenic -257693 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 221-281 chr7 47776731 47776879 + 2 NA intron (NM_138295, intron 56 of 56) intron (NM_138295, intron 56 of 56) 15329 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 346-80 chr11 102695178 102695462 + 2 NA intron (NM_022122, intron 6 of 9) intron (NM_022122, intron 6 of 9) 10449 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 344-504 chr8 129499797 129500136 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -15824 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 549-111 chr2 107316778 107317147 + 2 NA intron (NR_049853, intron 1 of 3) AluSc8|SINE|Alu 32563 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 274-236 chr20 33215177 33215351 + 2 NA Intergenic MIRb|SINE|MIR -2046 NM_001042439 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 268-345 chr6 70061886 70062064 + 2 NA intron (NM_001858, intron 14 of 50) intron (NM_001858, intron 14 of 50) 195419 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 442-175 chr22 43673762 43674059 + 2 NA intron (NM_198856, intron 11 of 29) AluYc|SINE|Alu 138395 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 338-470 chr6 51388304 51388584 + 2 NA Intergenic Intergenic -233426 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 300-437 chr7 79882294 79882531 + 2 NA Intergenic LTR40b|LTR|ERVL -252419 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 419-286 chr8 48771972 48772298 + 2 NA Intergenic Intergenic -36824 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 397-262 chr5 105081231 105081571 + 2 NA Intergenic L1PA16|LINE|L1 -18073 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 468-212 chr3 157875655 157876030 + 2 NA Intergenic L2a|LINE|L2 230321 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 218-195 chr21 23278365 23278516 + 2 NA Intergenic L1ME3A|LINE|L1 106395 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 275-31 chr10 5368979 5369248 + 2 NA intron (NM_053049, intron 1 of 1) intron (NM_053049, intron 1 of 1) 4147 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 295-504 chr9 97373269 97373482 + 2 NA intron (NM_020893, intron 34 of 36) L1ME4a|LINE|L1 -9694 NR_031637 100302223 NR_031637 ENSG00000221269 MIR1302-8 MIRN1302-8|hsa-mir-1302-8 microRNA 1302-8 ncRNA 196-39 chr10 114978512 114978647 + 2 NA TTS (NM_139169) TTS (NM_139169) -16078 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 286-378 chr6 15120121 15120384 + 2 NA Intergenic MIRb|SINE|MIR -125817 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 517-150 chr2 195955736 195956094 + 2 NA intron (NM_018897, intron 19 of 64) intron (NM_018897, intron 19 of 64) 112922 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 167-20 chr10 43153419 43153527 + 2 NA intron (NM_018590, intron 1 of 7) intron (NM_018590, intron 1 of 7) -1424 NM_001319656 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 222-47 chr10 101171663 101171837 + 2 NA Intergenic L1MC5a|LINE|L1 -4572 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 320-235 chr19 27702077 27702333 + 2 NA Intergenic ALR/Alpha|Satellite|centr -91226 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 275-380 chr9 28048591 28048810 + 2 NA intron (NM_152570, intron 5 of 6) L1ME4c|LINE|L1 -474834 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 257-142 chr16 82968587 82968740 + 2 NA intron (NR_110937, intron 1 of 2) intron (NR_110937, intron 1 of 2) 21635 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 205-44 chr10 113580720 113580890 + 2 NA intron (NM_001177660, intron 8 of 12) intron (NM_001177660, intron 8 of 12) 27752 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 530-182 chr4 83381618 83381953 + 2 NA Intergenic MER34|LTR|ERV1 -46632 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 294-212 chr2 59047966 59048199 + 2 NA intron (NR_033873, intron 12 of 13) intron (NR_033873, intron 12 of 13) -169626 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 806-16 chr14 49520591 49521163 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 65503 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 244-151 chr2 21468741 21468946 + 2 NA Intergenic Intergenic 241809 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 368-265 chr20 42012073 42012325 + 2 NA Intergenic Intergenic -393822 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 228-48 chr10 129534109 129534242 + 2 NA intron (NM_002412, intron 1 of 4) MIRb|SINE|MIR 66934 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 306-520 chr8 117775370 117775658 + 2 NA Intergenic L1PREC2|LINE|L1 145399 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 281-184 chr19 29296292 29296454 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -83222 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 377-171 chr18 54494614 54494842 + 2 NA Intergenic AluSc|SINE|Alu -93031 NM_001307955 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 674-97 chr7 111346057 111346588 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 215969 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 285-456 chr9 73973291 73973471 + 2 NA Intergenic Intergenic -398150 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 315-457 chr7 150746629 150746872 + 2 NA Intergenic Intergenic 9402 NM_018384 55340 Hs.647079 NM_018384 ENSG00000196329 GIMAP5 HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD GTPase, IMAP family member 5 protein-coding 254-48 chr10 108143715 108143899 + 2 NA Intergenic Intergenic -74514 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 383-270 chr4 23621681 23621888 + 2 NA Intergenic L1PA16|LINE|L1 259508 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 429-225 chr5 18871400 18871772 + 2 NA Intergenic Intergenic 1014686 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 325-523 chr7 157914468 157914709 + 2 NA intron (NM_130843, intron 10 of 21) intron (NM_130843, intron 10 of 21) 60003 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 435-274 chrX 102031080 102031419 + 2 NA Intergenic L1PA10|LINE|L1 -94430 NM_080390 140597 Hs.401835 NM_080390 ENSG00000184905 TCEAL2 MY0876G05|WEX1|my048 transcription elongation factor A like 2 protein-coding 656-63 chr2 124425751 124426221 + 2 NA intron (NM_130773, intron 4 of 23) intron (NM_130773, intron 4 of 23) 400699 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 784-38 chr3 104993389 104993991 + 2 NA Intergenic Intergenic -373023 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 214-277 chr6 65547300 65547496 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 32406 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 311-138 chr14 65452174 65452448 + 2 NA intron (NR_038170, intron 1 of 10) L1MEc|LINE|L1 -18791 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 273-84 chr11 95909585 95909761 + 2 NA intron (NM_016156, intron 1 of 14) L2c|LINE|L2 14434 NM_001243571 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 389-139 chr18 3682280 3682550 + 2 NA intron (NM_001308390, intron 4 of 10) MSTA|LTR|ERVL-MaLR 78678 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 336-580 chr9 71822280 71822562 + 2 NA Intergenic L2|LINE|L2 -53908 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 211-213 chr4 99281561 99281712 + 2 NA intron (NM_000667, intron 6 of 8) MIRb|SINE|MIR 9349 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 231-62 chr12 1402648 1402841 + 2 NA intron (NR_027948, intron 16 of 19) L1MEd|LINE|L1 -97747 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 339-174 chr15 46113061 46113268 + 2 NA Intergenic Intergenic 407969 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 234-70 chr12 4352708 4352882 + 2 NA 3' UTR (NM_020375, exon 6 of 6) 3' UTR (NM_020375, exon 6 of 6) 26917 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 321-252 chr18 57291082 57291316 + 2 NA Intergenic Intergenic -61358 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 517-19 chr1 209164553 209164902 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -160729 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 368-434 chr7 112707740 112707993 + 2 NA non-coding (NR_110158, exon 8 of 8) non-coding (NR_110158, exon 8 of 8) 82527 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 173-121 chr6 155650165 155650293 + 2 NA Intergenic MIR|SINE|MIR 135385 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 346-235 chr2 46784243 46784555 + 2 NA Intergenic Intergenic -32269 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 256-334 chr5 115765511 115765715 + 2 NA Intergenic L1MDa|LINE|L1 51044 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 197-67 chr15 82905872 82905980 + 2 NA intron (NM_004839, intron 1 of 8) L1MCa|LINE|L1 46794 NM_004839 9455 Hs.578443 NM_004839 ENSG00000103942 HOMER2 ACPD|CPD|DFNA68|HOMER-2|VESL-2 homer scaffold protein 2 protein-coding 238-94 chr13 81404428 81404589 + 2 NA Intergenic Intergenic -177525 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 691-95 chr9 90121166 90121666 + 2 NA Intergenic AluY|SINE|Alu -79917 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 273-354 chr5 52317206 52317415 + 2 NA Intergenic Intergenic 309279 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 317-208 chr19 33537846 33538108 + 2 NA Intergenic L2a|LINE|L2 -16186 NM_001166056 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 278-406 chr8 4093212 4093441 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 901588 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 160-17 chr11 98675343 98675490 + 2 NA Intergenic L1PA16|LINE|L1 -345533 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 389-364 chr8 107205882 107206110 + 2 NA Intergenic Intergenic 130519 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 258-204 chr2 136699399 136699563 + 2 NA Intergenic MIR|SINE|MIR -66064 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 572-49 chr13 58761737 58762126 + 2 NA Intergenic Intergenic -528814 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 368-428 chr7 69469084 69469369 + 2 NA Intergenic Intergenic 128398 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 563-68 chr17 52579361 52579856 + 2 NA Intergenic HERV9-int|LTR|ERV1 189086 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 306-280 chr20 39314802 39315045 + 2 NA Intergenic Intergenic -90175 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 281-150 chr16 60308355 60308595 + 2 NA Intergenic Intergenic 51318 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 629-122 chr7 119619506 119619979 + 2 NA non-coding (NR_131960, exon 5 of 5) non-coding (NR_131960, exon 5 of 5) 287633 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 356-513 chrX 5039450 5039714 + 2 NA Intergenic Intergenic -406010 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 315-434 chr7 4901765 4902056 + 2 NA intron (NR_072989, intron 8 of 8) MER63A|DNA|hAT-Blackjack -18194 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 589-127 chr5 106648098 106648541 + 2 NA Intergenic Intergenic 362695 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 235-100 chr14 51493918 51494093 + 2 NA intron (NM_001042481, intron 1 of 14) MLT1A0|LTR|ERVL-MaLR 4877 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 376-167 chr2 12128237 12128551 + 2 NA intron (NR_110197, intron 3 of 3) intron (NR_110197, intron 3 of 3) -70736 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 310-221 chr2 6621131 6621338 + 2 NA Intergenic L1ME1|LINE|L1 12553 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 219-257 chr4 51957215 51957351 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 63080 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 727-69 chr6 58442621 58443185 + 2 NA Intergenic ALR/Alpha|Satellite|centr -481457 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 482-279 chr8 121868845 121869136 + 2 NA Intergenic AluSx|SINE|Alu -227550 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 335-337 chr3 21924253 21924553 + 2 NA Intergenic L1MD2|LINE|L1 -32736 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 334-356 chr3 103328517 103328704 + 2 NA Intergenic Intergenic 195506 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 405-166 chr2 176786258 176786521 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 148635 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 353-90 chr11 83811932 83812184 + 2 NA intron (NM_001142699, intron 17 of 27) intron (NM_001142699, intron 17 of 27) -129633 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 389-103 chr14 62282197 62282443 + 2 NA Intergenic Intergenic -142347 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 132-66 chr6 16311556 16311680 + 2 NA intron (NM_000332, intron 8 of 8) intron (NM_000332, intron 8 of 8) 73031 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 286-352 chr5 35407384 35407576 + 2 NA Intergenic Intergenic -176993 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 190-22 chr10 118780595 118780702 + 2 NA Intergenic MER113|DNA|hAT-Charlie -25678 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 292-329 chr4 168566052 168566278 + 2 NA intron (NM_001166108, intron 2 of 21) intron (NM_001166108, intron 2 of 21) -65413 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 653-35 chr13 28694867 28695360 + 2 NA Intergenic Intergenic 23857 NM_001135919 283537 Hs.117167 NM_181785 ENSG00000139508 SLC46A3 FKSG16 solute carrier family 46 member 3 protein-coding 256-391 chr7 54624173 54624375 + 2 NA Intergenic L1MB4|LINE|L1 67304 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 162-112 chr6 112353206 112353300 + 2 NA Intergenic Intergenic 5923 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 400-216 chr3 64857176 64857563 + 2 NA intron (NR_038264, intron 3 of 5) intron (NR_038264, intron 3 of 5) -169369 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 273-412 chr7 11227336 11227500 + 2 NA Intergenic MIRb|SINE|MIR 253546 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 553-253 chrX 114887560 114888062 + 2 NA intron (NM_001256760, intron 6 of 6) AluSg|SINE|Alu 64357 NR_029955 554212 NR_029955 ENSG00000199001 MIR448 MIRN448|hsa-mir-448|miRNA448 microRNA 448 ncRNA 276-251 chr2 216944068 216944220 + 2 NA Intergenic Intergenic 73372 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 484-103 chr18 67366310 67366684 + 2 NA Intergenic Intergenic -150049 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 366-218 chr2 135325106 135325312 + 2 NA intron (NM_001286569, intron 6 of 21) L1M4|LINE|L1 188581 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 158-8 chr1 227835144 227835261 + 2 NA intron (NM_183062, intron 3 of 4) L1MB5|LINE|L1 19485 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 493-118 chr18 13766888 13767248 + 2 NA Intergenic L1PA15|LINE|L1 40395 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 351-461 chr7 146794904 146795144 + 2 NA intron (NM_014141, intron 1 of 22) intron (NM_014141, intron 1 of 22) 20753 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 192-78 chr16 60981146 60981245 + 2 NA Intergenic Intergenic 74571 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 277-204 chr2 106206498 106206702 + 2 NA Intergenic Intergenic -12261 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 305-124 chr12 62427085 62427330 + 2 NA Intergenic L1MEf|LINE|L1 -39619 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 246-275 chr3 133049219 133049421 + 2 NA intron (NM_001136469, intron 2 of 5) MER3|DNA|hAT-Charlie 11032 NM_023943 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 742-34 chr17 54558740 54559232 + 2 NA Intergenic Intergenic -341705 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 466-176 chr3 132874939 132875234 + 2 NA TTS (NR_002811) TTS (NR_002811) -152627 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 364-108 chr12 77124128 77124408 + 2 NA Intergenic L1MC1|LINE|L1 -58699 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 600-20 chr11 55255112 55255553 + 2 NA Intergenic ALR/Alpha|Satellite|centr -6823 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 306-367 chr4 121277639 121277874 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -50273 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 277-425 chr8 117494138 117494373 + 2 NA Intergenic L1PA14|LINE|L1 -26458 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 130-43 chr2 146956943 146957064 + 2 NA Intergenic L1MB8|LINE|L1 369946 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 443-57 chr11 101290615 101291015 + 2 NA Intergenic MLT2B5|LTR|ERVL -161002 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 249-78 chr11 80125673 80125866 + 2 NA Intergenic Intergenic 637034 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 206-29 chr10 56649246 56649405 + 2 NA Intergenic Intergenic -288052 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 332-297 chr20 61825125 61825434 + 2 NA intron (NM_001252339, intron 3 of 14) AluSz6|SINE|Alu -105531 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 793-53 chr8 139420897 139421591 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 281879 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 450-330 chrX 47719245 47719640 + 2 NA intron (NR_033924, intron 1 of 3) FRAM|SINE|Alu 12251 NR_033924 392459 Hs.562045 NR_033924 ENSG00000187893 CXXC1P1 CXorf25|NCRNA00236 CXXC finger protein 1 pseudogene 1 pseudo 209-322 chr8 87084937 87085092 + 2 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 218599 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 326-24 chr1 106453241 106453486 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -364876 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 215-257 chr5 66930956 66931147 + 2 NA intron (NM_015183, intron 3 of 27) Tigger20a|DNA|TcMar-Tigger -28022 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 583-66 chr16 83381240 83381668 + 2 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -126892 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 304-42 chr10 19203033 19203253 + 2 NA intron (NM_001142308, intron 14 of 39) intron (NM_001142308, intron 14 of 39) 154342 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 257-334 chr5 133514201 133514334 + 2 NA intron (NM_015082, intron 3 of 15) L1M6|LINE|L1 -86561 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 319-62 chr10 64023359 64023661 + 2 NA Intergenic L3|LINE|CR1 -501620 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 335-152 chr14 36883508 36883812 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) 68731 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 568-100 chr2 46809898 46810359 + 2 NA Intergenic L1ME3B|LINE|L1 -6540 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 447-186 chr3 166216445 166216794 + 2 NA Intergenic Intergenic -379196 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 260-365 chr5 165633925 165634127 + 2 NA Intergenic Intergenic 1163747 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 311-469 chr7 39550162 39550354 + 2 NA Intergenic AluSx1|SINE|Alu -16146 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 346-60 chr11 13472771 13472971 + 2 NA Intergenic MER84-int|LTR|ERV1 -9574 NM_001297741 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 332-506 chr7 120173544 120173786 + 2 NA Intergenic Intergenic -99510 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 221-198 chr3 115115706 115115817 + 2 NA intron (NM_001348800, intron 1 of 11) Charlie7|DNA|hAT-Charlie 15338 NR_046877 100874131 NR_046877 ENSG00000242767 ZBTB20-AS4 - ZBTB20 antisense RNA 4 ncRNA 289-348 chr4 122527679 122527850 + 2 NA Intergenic MLT2B4|LTR|ERVL -71269 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 406-113 chr17 71014834 71015050 + 2 NA Intergenic Intergenic 187237 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 313-19 chr1 108116195 108116468 + 2 NA Intergenic MER21C|LTR|ERVL 76504 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 478-291 chr8 86538601 86539047 + 2 NA intron (NM_003909, intron 7 of 16) L1MC4|LINE|L1 24389 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 330-449 chr5 171068303 171068503 + 2 NA intron (NM_022897, intron 14 of 27) L1PA3|LINE|L1 206385 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 136-4 chr1 73873954 73874038 + 2 NA Intergenic Intergenic 199317 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 400-124 chr17 12244052 12244342 + 2 NA Intergenic Intergenic 162298 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 352-380 chr4 96372908 96373180 + 2 NA intron (NR_147149, intron 1 of 3) L3|LINE|CR1 62341 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 614-142 chr9 6398106 6398454 + 2 NA Intergenic AluJo|SINE|Alu -14871 NR_046386 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 314-498 chr6 40111607 40111790 + 2 NA Intergenic Intergenic -177236 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 318-412 chr4 119778592 119778782 + 2 NA Intergenic L1PA13|LINE|L1 25828 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 372-495 chr8 127013282 127013620 + 2 NA non-coding (NR_045262, exon 1 of 2) non-coding (NR_045262, exon 1 of 2) 297 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 216-91 chr14 43769680 43769845 + 2 NA Intergenic Intergenic 737521 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 322-42 chr1 216063374 216063577 + 2 NA intron (NM_206933, intron 30 of 71) intron (NM_206933, intron 30 of 71) -8990 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 263-286 chr4 52650526 52650765 + 2 NA intron (NM_001286767, intron 1 of 8) L1ME3Cz|LINE|L1 5894 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 243-117 chr13 105740676 105740881 + 2 NA intron (NR_046391, intron 3 of 3) MIRb|SINE|MIR 33948 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 355-14 chr1 95551969 95552266 + 2 NA Intergenic MER112|DNA|hAT-Charlie 42001 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 462-76 chr14 41558021 41558358 + 2 NA Intergenic MER92B|LTR|ERV1 -48667 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 438-216 chr5 41087551 41087974 + 2 NA Intergenic Intergenic -16420 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 236-202 chr20 19289207 19289360 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -4687 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 362-203 chr19 8977737 8977993 + 2 NA exon (NM_024690, exon 1 of 84) exon (NM_024690, exon 1 of 84) 3477 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 330-555 chr9 81213027 81213340 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 476352 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 332-173 chr15 100079388 100079614 + 2 NA intron (NM_139057, intron 15 of 21) L1MB8|LINE|L1 262474 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 339-551 chr8 3463310 3463560 + 2 NA intron (NM_033225, intron 12 of 69) intron (NM_033225, intron 12 of 69) -734984 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 359-75 chr10 127654584 127654821 + 2 NA Intergenic Intergenic -82483 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 262-394 chr7 42355168 42355346 + 2 NA Intergenic Intergenic -118048 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 217-74 chr11 84245608 84245756 + 2 NA intron (NM_001142700, intron 1 of 19) intron (NM_001142700, intron 1 of 19) 27598 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 438-152 chr20 56029471 56029744 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -24088 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 234-113 chr15 68264674 68264852 + 2 NA Intergenic L1ME3|LINE|L1 -12982 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 396-29 chr1 197506174 197506446 + 2 NA non-coding (NR_125340, exon 20 of 20) non-coding (NR_125340, exon 20 of 20) 238058 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 442-158 chr20 21321991 21322319 + 2 NA intron (NM_001317960, intron 1 of 29) MIR|SINE|MIR 18657 NM_001317960 22803 Hs.255932 NM_012255 ENSG00000088930 XRN2 - 5'-3' exoribonuclease 2 protein-coding 383-319 chr5 72221912 72222236 + 2 NA intron (NM_015084, intron 10 of 10) intron (NM_015084, intron 10 of 10) 42287 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 206-278 chr8 141941676 141941872 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -155461 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 508-12 chr1 118273458 118273809 + 2 NA Intergenic Intergenic -88405 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 269-430 chr9 88877358 88877563 + 2 NA Intergenic Intergenic -113403 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 261-98 chr14 44538137 44538344 + 2 NA intron (NR_135257, intron 2 of 2) intron (NR_135257, intron 2 of 2) 30831 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 297-395 chr6 36778080 36778264 + 2 NA intron (NM_020939, intron 9 of 20) MIR3|SINE|MIR -20763 NM_001314018 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 230-168 chr2 49145121 49145345 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 9282 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 282-85 chr12 6591570 6591801 + 2 NA intron (NM_001273, intron 21 of 39) intron (NM_001273, intron 21 of 39) -10076 NR_003012 677780 Hs.689692 NR_003012 ENSG00000251898 SCARNA11 ACA57 small Cajal body-specific RNA 11 ncRNA 552-141 chr3 99427648 99428159 + 2 NA Intergenic Intergenic -210691 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 355-248 chr2 116736431 116736691 + 2 NA Intergenic L1M2|LINE|L1 -1078130 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 190-9 chr1 216421604 216421754 + 2 NA intron (NM_206933, intron 2 of 71) intron (NM_206933, intron 2 of 71) 1717 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 228-87 chr13 83021508 83021719 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 860780 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 301-249 chr20 17149537 17149775 + 2 NA Intergenic Intergenic -76451 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 312-303 chr21 20402475 20402691 + 2 NA Intergenic Intergenic -143898 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 302-49 chr10 65601103 65601272 + 2 NA intron (NR_120647, intron 2 of 5) L1PA13|LINE|L1 29762 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 271-142 chr14 85851016 85851246 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -83547 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 646-135 chr8 138410444 138411039 + 2 NA intron (NM_001362965, intron 1 of 19) L1P1|LINE|L1 86520 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 291-2 chr1 53842219 53842457 + 2 NA Intergenic HAL1M8|LINE|L1 -4042 NR_033142 55706 Hs.476525 NM_018087 ENSG00000058804 NDC1 NET3|TMEM48 NDC1 transmembrane nucleoporin protein-coding 262-246 chr20 21962527 21962767 + 2 NA Intergenic L1M4|LINE|L1 -91443 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 436-156 chr2 240774633 240774894 + 2 NA intron (NM_004321, intron 11 of 46) intron (NM_004321, intron 11 of 46) 45456 NM_001330290 547 Hs.516802 NM_004321 ENSG00000130294 KIF1A ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104 kinesin family member 1A protein-coding 559-175 chr7 108791294 108791649 + 2 NA Intergenic Intergenic 93116 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 331-521 chr8 53291980 53292189 + 2 NA Intergenic Intergenic -40387 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 393-152 chr2 1961576 1961872 + 2 NA intron (NM_015025, intron 8 of 24) intron (NM_015025, intron 8 of 24) -217209 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 220-40 chr10 22781443 22781658 + 2 NA Intergenic L2b|LINE|L2 -66972 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 275-97 chr14 21415046 21415225 + 2 NA intron (NM_001170629, intron 7 of 37) intron (NM_001170629, intron 7 of 37) -17734 NR_002916 319103 Hs.680078 NR_002916 ENSG00000200785 SNORD8 RNU6C|mgU6-53 small nucleolar RNA, C/D box 8 snoRNA 311-540 chr9 28701055 28701258 + 2 NA intron (NM_001354574, intron 2 of 5) L1MC1|LINE|L1 18149 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 261-164 chr19 27676091 27676309 + 2 NA Intergenic HSAT4|Satellite|centr -117231 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 276-412 chr6 124443776 124444006 + 2 NA intron (NM_001300738, intron 4 of 7) L2c|LINE|L2 160886 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 233-125 chr17 33327849 33328041 + 2 NA intron (NM_001094, intron 1 of 9) MLT1C|LTR|ERVL-MaLR -34957 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 330-425 chr5 68873149 68873357 + 2 NA Intergenic Intergenic 156674 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 262-457 chr9 96672584 96672743 + 2 NA Intergenic Intergenic -17346 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 499-69 chr14 71842355 71842777 + 2 NA Intergenic AluSq2|SINE|Alu -89605 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 256-298 chr4 140397402 140397604 + 2 NA intron (NM_001130675, intron 9 of 15) L1M5|LINE|L1 23993 NM_001153663 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 297 chr1 19958279 19958484 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 21278 NM_001161729 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 355-469 chr7 68616394 68616578 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 596233 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 184-46 chr12 100833284 100833456 + 2 NA intron (NM_001286615, intron 1 of 27) intron (NM_001286615, intron 1 of 27) 38594 NM_178826 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 398-383 chr9 79956698 79956900 + 2 NA intron (NR_121213, intron 1 of 2) L1M6|LINE|L1 -18224 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 456-229 chr4 96931141 96931558 + 2 NA Intergenic Intergenic -435577 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 250-253 chr21 27481762 27481932 + 2 NA Intergenic Intergenic -240532 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 358-9 chr1 73533753 73533934 + 2 NA Intergenic L1PA15|LINE|L1 -140836 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 639-75 chr20 58123509 58124077 + 2 NA Intergenic L1MC3|LINE|L1 -27109 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 447-84 chr15 94706960 94707325 + 2 NA Intergenic Intergenic -148221 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 353-332 chr3 90361374 90361681 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1253906 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 472-87 chr14 64053074 64053443 + 2 NA exon (NM_182914, exon 48 of 116) exon (NM_182914, exon 48 of 116) 41867 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 332-86 chr11 41723066 41723264 + 2 NA intron (NR_120584, intron 1 of 5) L1PA6|LINE|L1 8597 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 349-303 chr21 27416539 27416799 + 2 NA Intergenic L1M3c|LINE|L1 -305710 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 590-42 chr13 109931292 109931710 + 2 NA Intergenic Intergenic -121784 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 258-61 chr10 124208538 124208714 + 2 NA Intergenic AluY|SINE|Alu -115028 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 468-216 chr4 18451727 18452059 + 2 NA Intergenic Intergenic -430018 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 150-20 chr11 9061600 9061714 + 2 NA intron (NM_001367977, intron 7 of 22) HAL1|LINE|L1 28722 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 213-229 chr5 43851033 43851186 + 2 NA Intergenic Intergenic -247879 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 289-313 chr3 106887831 106888052 + 2 NA Intergenic Intergenic 352697 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 483-51 chr12 125438237 125438564 + 2 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 111784 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 353-149 chr14 73239871 73240087 + 2 NA intron (NM_001365907, intron 1 of 25) intron (NM_001365907, intron 1 of 25) 206 NM_001365907 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 337-36 chr1 234282290 234282507 + 2 NA intron (NM_173508, intron 3 of 7) intron (NM_173508, intron 3 of 7) -24069 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 506-306 chrX 97100242 97100574 + 2 NA intron (NM_007309, intron 20 of 26) intron (NM_007309, intron 20 of 26) 216500 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 256-173 chr18 39475265 39475426 + 2 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 146830 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 189-213 chr8 113732424 113732565 + 2 NA Intergenic Intergenic -295555 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 402-167 chr2 133862578 133862938 + 2 NA Intergenic Intergenic -257177 NM_001371457 866-12 chr12 41768986 41769637 + 2 NA Intergenic Intergenic 5122 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 354-46 chr10 34088711 34088939 + 2 NA Intergenic Intergenic -316145 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 244-219 chr3 25533599 25533839 + 2 NA intron (NR_110892, intron 3 of 6) intron (NR_110892, intron 3 of 6) 75409 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 594-148 chr8 107304499 107304953 + 2 NA intron (NM_001199859, intron 4 of 8) intron (NM_001199859, intron 4 of 8) 31789 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 131-25 chr14 81387293 81387363 + 2 NA intron (NM_001366850, intron 4 of 7) intron (NM_001366850, intron 4 of 7) 40447 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 560-157 chr6 148086586 148086936 + 2 NA Intergenic Intergenic -185567 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 361-223 chr2 102092877 102093136 + 2 NA intron (NM_001320978, intron 1 of 11) intron (NM_001320978, intron 1 of 11) -11598 NM_001320986 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 324-93 chr11 71486226 71486536 + 2 NA intron (NM_018161, intron 16 of 20) (TCCA)n|Simple_repeat|Simple_repeat 12878 NR_106812 102466728 NR_106812 ENSG00000278349 MIR6754 hsa-mir-6754 microRNA 6754 ncRNA 308-116 chr12 115711714 115711996 + 2 NA Intergenic Intergenic 436799 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 322-561 chr9 26575694 26575950 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 316980 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 238-186 chr2 141866362 141866569 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 265236 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 350-473 chr7 30697341 30697634 + 2 NA intron (NM_001202481, intron 1 of 13) intron (NM_001202481, intron 1 of 13) 2616 NM_001202475 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 304-68 chr10 130757114 130757293 + 2 NA Intergenic Intergenic 205465 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 216-306 chr6 71607504 71607699 + 2 NA Intergenic Intergenic 186574 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 204-181 chr22 24853380 24853516 + 2 NA intron (NM_001098498, intron 5 of 23) intron (NM_001098498, intron 5 of 23) 47227 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 500-271 chr7 49674017 49674286 + 2 NA Intergenic Intergenic -99487 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 208-279 chr9 26041421 26041591 + 2 NA Intergenic L1MEc|LINE|L1 -25169 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 268-248 chr3 102993853 102994042 + 2 NA Intergenic LTR40b|LTR|ERVL 530169 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 485-236 chr5 140773042 140773346 + 2 NA Intergenic L1MD1|LINE|L1 -12942 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 619-30 chr12 630864 631346 + 2 NA intron (NR_122124, intron 1 of 4) intron (NR_122124, intron 1 of 4) 214 NR_122124 100049716 Hs.655804 NR_122124 ENSG00000177406 LOC100049716 - uncharacterized LOC100049716 ncRNA 410-225 chr4 124471539 124471833 + 2 NA Intergenic HERVL-int|LTR|ERVL 86748 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 238-15 chr1 152702011 152702228 + 2 NA Intergenic L1ME3B|LINE|L1 3774 NM_178428 353139 Hs.334054 NM_178428 ENSG00000187173 LCE2A LEP9 late cornified envelope 2A protein-coding 276-89 chr11 87432405 87432619 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger 286899 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 112-46 chr7 121351564 121351629 + 2 NA intron (NM_001040020, intron 8 of 9) intron (NM_001040020, intron 8 of 9) 22596 NM_057168 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 215-328 chr8 137630457 137630619 + 2 NA Intergenic AluSq2|SINE|Alu -216950 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 505-269 chr6 75394867 75395269 + 2 NA intron (NR_125859, intron 2 of 8) L1MC4a|LINE|L1 11882 NR_125859 101928540 Hs.526972 NR_125859 LOC101928540 - uncharacterized LOC101928540 ncRNA 344-265 chr2 228964894 228965106 + 2 NA Intergenic Intergenic 267092 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 322-376 chr4 73634403 73634620 + 2 NA Intergenic L1PB3|LINE|L1 -13880 NM_001270392 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 423-285 chr8 20985747 20986130 + 2 NA intron (NR_033894, intron 2 of 4) intron (NR_033894, intron 2 of 4) 11952 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 271-433 chr8 72466552 72466725 + 2 NA Intergenic Intergenic -70587 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 200-257 chr7 85095791 85095932 + 2 NA intron (NM_152754, intron 2 of 16) intron (NM_152754, intron 2 of 16) 26070 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 681-16 chr13 47246267 47246780 + 2 NA Intergenic L1MC3|LINE|L1 -349447 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 414-257 chr5 12661114 12661523 + 2 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) -6541 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 735-41 chr2 58037948 58038455 + 2 NA intron (NM_001288838, intron 3 of 15) THE1D|LTR|ERVL-MaLR -8441 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 233-15 chr1 162342031 162342181 + 2 NA promoter-TSS (NR_030283) promoter-TSS (NR_030283) -440 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 434-192 chr3 120291757 120292127 + 2 NA Intergenic L1PREC2|LINE|L1 -47647 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 239-233 chr3 37866060 37866293 + 2 NA intron (NM_001008392, intron 1 of 7) L1ME3G|LINE|L1 4296 NM_005808 10217 Hs.475963 NM_005808 ENSG00000144677 CTDSPL C3orf8|HYA22|PSR1|RBSP3|SCP3 CTD small phosphatase like protein-coding 382-56 chr11 23201686 23201910 + 2 NA Intergenic Intergenic 217392 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 170-10 chr1 179681964 179682098 + 2 NA intron (NM_001199091, intron 16 of 16) intron (NM_001199091, intron 16 of 16) -45745 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 545-92 chr17 51524589 51525043 + 2 NA Intergenic L1MC3|LINE|L1 89389 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 324-142 chr13 74442198 74442396 + 2 NA Intergenic L1MA9|LINE|L1 23124 NR_047005 100874151 Hs.564552 NR_047005 ENSG00000226240 LINC00381 - long intergenic non-protein coding RNA 381 ncRNA 261-57 chr11 5743178 5743374 + 2 NA Intergenic L1PA15-16|LINE|L1 6828 NM_001005180 387748 Hs.689609 NM_001005180 ENSG00000181023 OR56B1 OR11-65|OR56B1P olfactory receptor family 56 subfamily B member 1 protein-coding 239-10 chr1 103222114 103222275 + 2 NA Intergenic L1M5|LINE|L1 -113672 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 149-19 chr11 134099980 134100107 + 2 NA intron (NM_001205329, intron 1 of 7) intron (NM_001205329, intron 1 of 7) 30971 NM_032801 83700 Hs.150718 NM_032801 ENSG00000166086 JAM3 JAM-2|JAM-3|JAM-C|JAMC junctional adhesion molecule 3 protein-coding 353-529 chr8 87773774 87774016 + 2 NA Intergenic Intergenic 100120 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 164-2 chr1 65669760 65669876 + 2 NA Intergenic L1M5|LINE|L1 -122692 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 302-448 chr8 79610016 79610241 + 2 NA promoter-TSS (NM_001199214) promoter-TSS (NM_001199214) -989 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 141-24 chr14 84383121 84383217 + 2 NA Intergenic L1MB2|LINE|L1 -888763 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 293-363 chr6 28312520 28312689 + 2 NA Intergenic Intergenic 23530 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 252-22 chr1 187609840 187610019 + 2 NA Intergenic L1MA3|LINE|L1 166301 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 391-112 chr14 71148980 71149231 + 2 NA Intergenic Intergenic -171371 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 366-91 chr12 3985229 3985430 + 2 NA Intergenic L1PA16|LINE|L1 -111881 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 315-164 chr16 3218357 3218627 + 2 NA Intergenic Intergenic 2930 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 450-149 chr2 144405582 144405968 + 2 NA intron (NM_001171653, intron 3 of 8) intron (NM_001171653, intron 3 of 8) -72706 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 185-143 chr4 32569178 32569313 + 2 NA Intergenic Intergenic 218207 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 410-285 chr7 89720399 89720709 + 2 NA Intergenic Intergenic -398846 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 294-491 chr9 28666945 28667199 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 52233 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 346-511 chr8 138657573 138657834 + 2 NA intron (NM_152888, intron 44 of 64) intron (NM_152888, intron 44 of 64) -159973 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 488-74 chr14 43652805 43653139 + 2 NA Intergenic L1PB1|LINE|L1 854311 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 366-154 chr16 60587128 60587366 + 2 NA Intergenic Intergenic -227454 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 252-465 chrX 116267994 116268170 + 2 NA Intergenic Intergenic 97338 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 555-89 chr2 43854827 43855339 + 2 NA intron (NM_001357321, intron 6 of 12) intron (NM_001357321, intron 6 of 12) 16112 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 516-45 chr12 23307966 23308316 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 132505 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 502-202 chr4 81859885 81860271 + 2 NA Intergenic Intergenic -388171 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 493-218 chr4 21153257 21153656 + 2 NA intron (NM_147182, intron 2 of 8) (TC)n|Simple_repeat|Simple_repeat 150450 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 322-577 chrX 37728412 37728707 + 2 NA 3' UTR (NM_021083, exon 3 of 3) 3' UTR (NM_021083, exon 3 of 3) 42768 NM_021083 7504 Hs.78919 NM_021083 ENSG00000047597 XK KX|NA|NAC|X1k|XKR1 X-linked Kx blood group protein-coding 400-146 chr19 52674469 52674829 + 2 NA intron (NM_001348019, intron 1 of 6) L1M3|LINE|L1 15932 NM_001348019 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 545-251 chr8 138490965 138491362 + 2 NA intron (NM_001362965, intron 1 of 19) AluSq2|SINE|Alu 6098 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 367-291 chr3 111602602 111602942 + 2 NA intron (NM_001318889, intron 7 of 7) intron (NM_001318889, intron 7 of 7) -7426 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 323-108 chr12 26771936 26772120 + 2 NA intron (NM_002223, intron 2 of 56) intron (NM_002223, intron 2 of 56) 61166 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 272-95 chr12 41736079 41736262 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -28019 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 234-355 chr7 19244574 19244801 + 2 NA Intergenic Intergenic -99266 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 184-50 chr13 50093703 50093832 + 2 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 11598 NR_109974 10301 Hs.591229 NM_005887 ENSG00000176124 DLEU1 BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 deleted in lymphocytic leukemia 1 ncRNA 386-140 chr18 30201791 30202050 + 2 NA Intergenic L1MA10|LINE|L1 -96990 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 539-30 chr10 94907824 94908359 + 2 NA Intergenic L1M2|LINE|L1 -30567 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 280-370 chr7 9591839 9591987 + 2 NA Intergenic L1PA15|LINE|L1 -42357 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 372-476 chr8 49845308 49845621 + 2 NA Intergenic Intergenic -64332 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 283-144 chr15 42547470 42547669 + 2 NA intron (NM_153260, intron 3 of 5) intron (NM_153260, intron 3 of 5) 1224 NM_153260 255252 Hs.234681 NM_153260 ENSG00000180979 LRRC57 - leucine rich repeat containing 57 protein-coding 220-218 chr3 33539067 33539242 + 2 NA intron (NM_001365634, intron 29 of 35) intron (NM_001365634, intron 29 of 35) -98749 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 178-89 chr3 99503434 99503565 + 2 NA Intergenic LTR16A2|LTR|ERVL -135095 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 399-60 chr11 68579961 68580320 + 2 NA intron (NR_147968, intron 14 of 23) L2a|LINE|L2 -104404 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 216-118 chr15 95571870 95572084 + 2 NA Intergenic L1MEd|LINE|L1 138884 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 152-72 chr4 54003330 54003467 + 2 NA Intergenic Intergenic -16116 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 548-42 chr11 113464283 113464663 + 2 NA intron (NM_016574, intron 1 of 6) L2|LINE|L2 10806 NM_016574 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 477-4 chr1 33828877 33829206 + 2 NA intron (NM_052896, intron 6 of 69) intron (NM_052896, intron 6 of 69) -31434 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 510-248 chr6 92935810 92936144 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 483582 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 398-196 chr22 43792376 43792610 + 2 NA intron (NM_022785, intron 2 of 31) L2a|LINE|L2 19812 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 347-100 chr12 82704223 82704524 + 2 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 17218 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 353-495 chr7 94682520 94682807 + 2 NA Intergenic L1M5|LINE|L1 26293 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 621-16 chr10 66590902 66591430 + 2 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -334870 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 382-200 chr2 81220543 81220831 + 2 NA Intergenic L1MB5|LINE|L1 246259 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 314-25 chr1 114730066 114730262 + 2 NA intron (NM_001007553, intron 12 of 19) intron (NM_001007553, intron 12 of 19) -13393 NM_002524 4893 Hs.486502 NM_002524 ENSG00000213281 NRAS ALPS4|CMNS|N-ras|NCMS|NRAS1|NS6 NRAS proto-oncogene, GTPase protein-coding 248-125 chr15 37605397 37605637 + 2 NA Intergenic L1ME3C|LINE|L1 -329090 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 380-17 chr1 109123463 109123786 + 2 NA intron (NM_001284352, intron 1 of 20) HAL1b|LINE|L1 9509 NM_020775 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 542-111 chr2 213704243 213704599 + 2 NA intron (NR_047660, intron 9 of 14) MIR|SINE|MIR -53646 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 522-38 chr11 21329539 21329941 + 2 NA intron (NM_201551, intron 14 of 18) L1M4b|LINE|L1 660154 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 316-530 chr7 138985054 138985354 + 2 NA Intergenic L2a|LINE|L2 -3815 NM_001164665 57670 Hs.605380 NM_020910 ENSG00000122778 KIAA1549 - KIAA1549 protein-coding 296-185 chr17 57697593 57697770 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 47618 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 571-97 chr21 20146576 20146949 + 2 NA Intergenic Intergenic 111923 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 239-420 chr8 129558739 129558892 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 16203 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 490-111 chr17 77743035 77743433 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -14675 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 224-31 chr10 32588449 32588596 + 2 NA intron (NM_001321115, intron 19 of 43) L1PA7|LINE|L1 142382 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 374-211 chr2 204234815 204235136 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 298227 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 230-226 chr3 18271888 18272107 + 2 NA Intergenic Intergenic 153342 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 319-226 chr2 5846604 5846917 + 2 NA Intergenic L3|LINE|CR1 -34164 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 257-193 chr2 78044810 78045002 + 2 NA intron (NR_110288, intron 1 of 3) THE1B|LTR|ERVL-MaLR -43824 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 741-14 chr12 3847751 3848283 + 2 NA intron (NM_020367, intron 1 of 7) L1MA4|LINE|L1 25382 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 493-132 chr2 7576040 7576446 + 2 NA Intergenic L1MEc|LINE|L1 154982 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 490-244 chr6 90787570 90787894 + 2 NA Intergenic Intergenic -200660 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 250-101 chr12 125388433 125388627 + 2 NA intron (NM_052907, intron 2 of 8) intron (NM_052907, intron 2 of 8) 61914 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 578-83 chr2 66839646 66840161 + 2 NA Intergenic Intergenic -64533 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 367-53 chr10 76768409 76768607 + 2 NA Intergenic L1ME2z|LINE|L1 -119536 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 234-374 chr7 123207526 123207682 + 2 NA Intergenic Intergenic -7633 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 218-263 chr5 44319355 44319527 + 2 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -69291 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 606-61 chr17 3344145 3344578 + 2 NA Intergenic LTR55|LTR|ERVL? 34116 NR_024128 390756 Hs.632245 NM_001005334 ENSG00000180068 OR3A4P OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P olfactory receptor family 3 subfamily A member 4 pseudogene pseudo 421-251 chr5 156804636 156804961 + 2 NA Intergenic L1MEg|LINE|L1 -45497 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 333-2 chr1 5317221 5317453 + 2 NA Intergenic Intergenic 545404 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 378-150 chr15 80501182 80501504 + 2 NA intron (NM_014862, intron 5 of 18) intron (NM_014862, intron 5 of 18) 61601 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 147-77 chr6 119868036 119868129 + 2 NA Intergenic Intergenic -147097 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 239-228 chr22 34874643 34874766 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 123212 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 465-53 chr11 82140194 82140584 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -249553 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 343-299 chr20 17088721 17089012 + 2 NA Intergenic Intergenic -137241 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 382-387 chr7 98093139 98093456 + 2 NA Intergenic L1MB7|LINE|L1 -13565 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 466-188 chr4 101824025 101824374 + 2 NA intron (NM_001083907, intron 1 of 16) LTR16C|LTR|ERVL 10357 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 399-22 chr1 215805237 215805581 + 2 NA intron (NM_206933, intron 49 of 71) L1MB3|LINE|L1 238105 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 256-124 chr14 62385620 62385830 + 2 NA Intergenic L1ME2|LINE|L1 -245752 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 184-37 chr11 58115356 58115466 + 2 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) 4033 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 573-41 chr11 92317332 92317732 + 2 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) -34564 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 346-416 chr6 41213006 41213253 + 2 NA intron (NR_027256, intron 3 of 4) L1MEh|LINE|L1 4818 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 350-323 chr3 119112700 119112965 + 2 NA intron (NM_152538, intron 1 of 8) MSTA|LTR|ERVL-MaLR 33188 NM_152538 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 229-25 chr10 27055012 27055206 + 2 NA intron (NM_014915, intron 15 of 33) intron (NM_014915, intron 15 of 33) 45389 NM_001256053 22852 Hs.361041 NM_014915 ENSG00000107890 ANKRD26 THC2|bA145E8.1 ankyrin repeat domain 26 protein-coding 378-328 chr5 8525088 8525365 + 2 NA Intergenic MER21A|LTR|ERVL 64301 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 182-173 chr8 128369392 128369507 + 2 NA Intergenic L2c|LINE|L2 195230 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 556-119 chr2 225411714 225412186 + 2 NA intron (NM_001371273, intron 3 of 7) L2|LINE|L2 11064 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 346-170 chr15 98252140 98252346 + 2 NA Intergenic L1MEg|LINE|L1 79315 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 340-332 chr21 26194889 26195084 + 2 NA Intergenic L3|LINE|CR1 -23858 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 362-448 chr8 125537808 125538066 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 105728 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 207-205 chr3 189148384 189148579 + 2 NA Intergenic L2c|LINE|L2 -23490 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 248-427 chr9 32769171 32769387 + 2 NA Intergenic L1MA8|LINE|L1 -14261 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 248-166 chr19 58246371 58246602 + 2 NA intron (NM_001320773, intron 5 of 5) intron (NM_001320773, intron 5 of 5) 17572 NM_001320787 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 330-401 chr5 7510813 7511045 + 2 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 114791 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 636-105 chr5 10852759 10853322 + 2 NA Intergenic MamGypLTR2c|LTR|Gypsy -91806 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 425-78 chr14 42604085 42604347 + 2 NA Intergenic Intergenic 997360 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 145-93 chrX 64371197 64371292 + 2 NA intron (NM_017677, intron 1 of 13) L1ME4c|LINE|L1 24208 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 450-124 chr19 27537907 27538253 + 2 NA Intergenic ALR/Alpha|Satellite|centr -255351 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 153-55 chr2 161473269 161473396 + 2 NA Intergenic Intergenic 34570 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 245-327 chr7 52667676 52667899 + 2 NA Intergenic Intergenic -367846 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 328-51 chr10 44420714 44421003 + 2 NA Intergenic Intergenic -35761 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 328-459 chr5 92336330 92336567 + 2 NA Intergenic Intergenic -953131 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 244-343 chr7 41179692 41179929 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 78206 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 748-7 chr1 181816326 181816952 + 2 NA Intergenic MIR3|SINE|MIR 245073 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 495-225 chr6 151633984 151634391 + 2 NA Intergenic Intergenic -56309 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 401-39 chr10 84047628 84047864 + 2 NA Intergenic Intergenic -91763 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 356-347 chr4 28555438 28555757 + 2 NA Intergenic Intergenic -263985 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 434-299 chr8 132137380 132137685 + 2 NA intron (NM_001204824, intron 12 of 14) intron (NM_001204824, intron 12 of 14) -32267 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 255-461 chr9 81664298 81664468 + 2 NA intron (NM_005077, intron 4 of 19) intron (NM_005077, intron 4 of 19) 25152 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 523-17 chr1 209088724 209089086 + 2 NA Intergenic L1ME1|LINE|L1 116451 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 205-189 chr3 132025804 132025970 + 2 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 9555 NM_130808 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 382-168 chr2 3689351 3689569 + 2 NA intron (NM_018436, intron 7 of 11) L1M1|LINE|L1 -14115 NM_001287444 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 460-3 chr1 81378032 81378412 + 2 NA intron (NM_001366003, intron 2 of 27) MIRb|SINE|MIR 71827 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 299-130 chr14 47051537 47051746 + 2 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 291605 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 481-112 chr16 62654179 62654651 + 2 NA Intergenic AluJb|SINE|Alu -617977 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 338-89 chr10 125594349 125594576 + 2 NA intron (NM_001318133, intron 3 of 3) intron (NM_001318133, intron 3 of 3) 20091 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 271-430 chr8 54629716 54629976 + 2 NA exon (NM_006269, exon 4 of 4) exon (NM_006269, exon 4 of 4) 13750 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 237-362 chr7 94428702 94428842 + 2 NA intron (NM_000089, intron 50 of 51) intron (NM_000089, intron 50 of 51) 34211 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 359-250 chr2 143857923 143858140 + 2 NA Intergenic AluY|SINE|Alu -79036 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 302-310 chr4 10975663 10975859 + 2 NA Intergenic MIRb|SINE|MIR -290993 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 603-39 chr12 133070832 133071238 + 2 NA Intergenic L1ME2|LINE|L1 -9168 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 362-215 chr2 78855351 78855673 + 2 NA Intergenic Intergenic -170190 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 420-190 chr3 109468968 109469337 + 2 NA intron (NR_109841, intron 3 of 4) THE1B-int|LTR|ERVL-MaLR 59162 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 495-34 chr11 39590396 39590790 + 2 NA Intergenic Intergenic 702537 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 261-275 chr4 44238090 44238334 + 2 NA intron (NM_198353, intron 1 of 1) L2c|LINE|L2 210597 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 302-265 chr22 24376996 24377248 + 2 NA intron (NM_001254732, intron 13 of 14) L1MB8|LINE|L1 35014 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 288-341 chr5 129382824 129383084 + 2 NA Intergenic Intergenic 14193 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 513-167 chr21 28437014 28437363 + 2 NA Intergenic Intergenic -102130 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 230-80 chr12 40651997 40652187 + 2 NA Intergenic L2a|LINE|L2 -40347 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 266-213 chr2 224148627 224148853 + 2 NA Intergenic L1ME4a|LINE|L1 -109421 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 478-21 chr10 11313086 11313424 + 2 NA intron (NM_001025076, intron 9 of 13) L1MEd|LINE|L1 31419 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 710-28 chr14 37283434 37284027 + 2 NA intron (NM_138731, intron 7 of 13) MIRb|SINE|MIR 85793 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 290-418 chr7 46925648 46925852 + 2 NA Intergenic L1M2|LINE|L1 -228628 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 279-307 chr5 9303647 9303834 + 2 NA intron (NM_003966, intron 5 of 22) L1MA6|LINE|L1 -207593 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 311-371 chr4 42958764 42959041 + 2 NA intron (NM_001080476, intron 1 of 3) L1MA9|LINE|L1 65636 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 317-536 chr9 106027562 106027764 + 2 NA Intergenic Intergenic 333122 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 191-199 chr7 41016001 41016173 + 2 NA Intergenic Intergenic -36148 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 367-251 chr20 48530052 48530351 + 2 NA Intergenic L1MC4a|LINE|L1 170290 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 296-505 chrX 78219201 78219448 + 2 NA Intergenic L1PREC2|LINE|L1 -79674 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 226-285 chr5 75005727 75005894 + 2 NA Intergenic HAL1|LINE|L1 46748 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 276-106 chr12 23514918 23515089 + 2 NA Intergenic Intergenic 69583 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 480-102 chr16 55254312 55254737 + 2 NA Intergenic Intergenic -70035 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 338-279 chr2 159087271 159087506 + 2 NA intron (NM_001350065, intron 4 of 27) L1M6|LINE|L1 -99447 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 298-54 chr10 76645674 76645854 + 2 NA Intergenic Intergenic -242280 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 148-26 chr14 48900461 48900588 + 2 NA Intergenic Intergenic 685856 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 302-45 chr10 45662819 45663025 + 2 NA intron (NM_001282906, intron 2 of 10) intron (NM_001282906, intron 2 of 10) 9810 NM_001282905 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 356-168 chr15 77207913 77208110 + 2 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) 17393 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 309-392 chr4 62505891 62506154 + 2 NA Intergenic LTR33A|LTR|ERVL -344257 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 804-38 chr20 52698500 52699030 + 2 NA Intergenic L1MB8|LINE|L1 77927 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 139-2 chr1 103398427 103398524 + 2 NA Intergenic Intergenic 127036 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 267-331 chr5 62707976 62708159 + 2 NA Intergenic Intergenic 129248 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 467-158 chr20 63213787 63214154 + 2 NA intron (NM_017798, intron 2 of 4) intron (NM_017798, intron 2 of 4) 2161 NM_017798 54915 Hs.744852 NM_017798 ENSG00000149658 YTHDF1 C20orf21 YTH N6-methyladenosine RNA binding protein 1 protein-coding 550-67 chr14 24890573 24891070 + 2 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 158179 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 220-265 chr4 107430008 107430166 + 2 NA Intergenic L2|LINE|L2 290147 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 373-294 chr4 107225177 107225473 + 2 NA Intergenic Intergenic -189012 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 437-41 chr11 50435249 50435535 + 2 NA Intergenic ALR/Alpha|Satellite|centr 26245 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 388-284 chr5 82095753 82096019 + 2 NA intron (NM_031482, intron 3 of 7) intron (NM_031482, intron 3 of 7) 123863 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 286-355 chr5 42682815 42682962 + 2 NA intron (NM_001242403, intron 3 of 9) MLT1F2|LTR|ERVL-MaLR -73930 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 152-68 chr4 30852455 30852585 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 132151 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 258-101 chr13 27586040 27586255 + 2 NA intron (NM_153371, intron 1 of 9) intron (NM_153371, intron 1 of 9) 34382 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 240-337 chr4 169196131 169196324 + 2 NA intron (NM_020870, intron 2 of 11) L1ME3A|LINE|L1 74729 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 212-198 chr22 34726378 34726523 + 2 NA Intergenic L1MA10|LINE|L1 271466 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 694-95 chr4 57813473 57813997 + 2 NA Intergenic Intergenic 387863 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 131-68 chr7 7955704 7955793 + 2 NA intron (NR_110018, intron 3 of 4) intron (NR_110018, intron 3 of 4) 13004 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 331-563 chrX 35003345 35003558 + 2 NA Intergenic Intergenic 60655 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 283-240 chr2 112202388 112202561 + 2 NA Intergenic Intergenic 52568 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 341-516 chr8 57777492 57777793 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 31493 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 449-169 chr3 87619122 87619377 + 2 NA Intergenic Intergenic -173457 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 379-148 chr2 14446789 14447132 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -46002 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 412-209 chr3 74192691 74193012 + 2 NA Intergenic Intergenic 328289 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 292-187 chr18 77183536 77183795 + 2 NA Intergenic L1PA10|LINE|L1 -50882 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 508-63 chr14 97614887 97615272 + 2 NA Intergenic L1MA5|LINE|L1 71579 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 173-88 chr22 39816784 39816930 + 2 NA intron (NM_152512, intron 5 of 6) L1M5|LINE|L1 76903 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 268-443 chrX 5630555 5630741 + 2 NA Intergenic Intergenic -595710 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 215-35 chr10 58911989 58912158 + 2 NA Intergenic Intergenic -87445 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 319-419 chr5 89637528 89637707 + 2 NA Intergenic Intergenic 379103 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 533-226 chr8 62950503 62950905 + 2 NA intron (NR_130764, intron 5 of 6) intron (NR_130764, intron 5 of 6) -27157 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 190-172 chr8 35607819 35607933 + 2 NA intron (NM_001322818, intron 4 of 16) (TAACCC)n|Simple_repeat|Simple_repeat 63484 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 295-199 chr2 22673271 22673426 + 2 NA Intergenic Intergenic 136869 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 349-400 chr5 5657168 5657405 + 2 NA Intergenic MER66C|LTR|ERV1 234609 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 586-44 chr12 82260791 82261221 + 2 NA Intergenic Intergenic 97381 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 372-279 chr20 15124274 15124601 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -72403 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 397-317 chr7 132383488 132383856 + 2 NA 3' UTR (NM_001105543, exon 4 of 4) 3' UTR (NM_001105543, exon 4 of 4) 122811 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 491-159 chr22 38073120 38073579 + 2 NA intron (NM_001039584, intron 10 of 12) intron (NM_001039584, intron 10 of 12) 9814 NM_013356 23539 Hs.745256 NM_013356 ENSG00000100156 SLC16A8 MCT3|REMP solute carrier family 16 member 8 protein-coding 276-328 chr4 42631047 42631306 + 2 NA intron (NM_001105529, intron 1 of 35) intron (NM_001105529, intron 1 of 35) 25929 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 453-57 chr12 97770307 97770629 + 2 NA Intergenic Intergenic -13951 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 264-48 chr10 58717619 58717802 + 2 NA TTS (NR_027508) TTS (NR_027508) 2695 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 303-85 chr12 13982980 13983246 + 2 NA Intergenic Intergenic -2757 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 187-91 chr20 3557204 3557349 + 2 NA intron (NM_001207047, intron 6 of 24) intron (NM_001207047, intron 6 of 24) 86258 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 384-225 chr3 74408857 74409109 + 2 NA intron (NM_020872, intron 4 of 21) intron (NM_020872, intron 4 of 21) 112157 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 376-367 chr7 32423193 32423494 + 2 NA intron (NM_001322059, intron 1 of 17) AluJo|SINE|Alu 4881 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 264-361 chr6 68083567 68083763 + 2 NA Intergenic Intergenic 28314 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 312-390 chr4 122538059 122538258 + 2 NA Intergenic LTR80A|LTR|ERVL -80825 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 904-40 chr7 113958374 113959081 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -39718 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 303-266 chr21 32105602 32105785 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -19398 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 317-252 chr2 149306524 149306812 + 2 NA Intergenic Intergenic -23317 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 215-198 chr3 88467870 88467979 + 2 NA TTS (NM_001368165) TTS (NM_001368165) 129468 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 506-219 chr4 178321302 178321730 + 2 NA Intergenic LTR16B|LTR|ERVL -413580 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 221-37 chr10 60689835 60690010 + 2 NA intron (NM_001204403, intron 1 of 43) L1ME3Cz|LINE|L1 43606 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 415-87 chr16 20104677 20104931 + 2 NA Intergenic Intergenic -31026 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 616-30 chr12 69182891 69183490 + 2 NA Intergenic Intergenic -56379 NM_007007 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 238-315 chr6 34464886 34465051 + 2 NA Intergenic AluSp|SINE|Alu -1108 NM_020804 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 284-29 chr10 30081038 30081242 + 2 NA intron (NM_001350022, intron 1 of 4) UCON132b|DNA|hAT-Tip100 -21554 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 564-186 chr7 40721326 40721743 + 2 NA intron (NM_024728, intron 13 of 14) LFSINE_Vert|SINE|tRNA 258405 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 217-41 chr10 53512366 53512517 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -740741 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 772-59 chr9 22347723 22348278 + 2 NA Intergenic AluSx4|SINE|Alu -98824 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 442-94 chr15 88596634 88596921 + 2 NA intron (NR_120370, intron 2 of 2) intron (NR_120370, intron 2 of 2) 7826 NR_120369 101929743 Hs.558810 NR_120369 ENSG00000249487 LINC01586 - long intergenic non-protein coding RNA 1586 ncRNA 641-73 chr3 723332 723772 + 2 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 131447 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 498-67 chr12 47123602 47124078 + 2 NA intron (NM_001281429, intron 2 of 2) L1ME4a|LINE|L1 -43881 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 540-166 chr5 3755026 3755461 + 2 NA Intergenic AluYe5|SINE|Alu 159411 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 333-188 chr17 53308243 53308482 + 2 NA Intergenic L1M3|LINE|L1 322857 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 155-87 chr6 60687554 60687667 + 2 NA Intergenic Intergenic -886520 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 157-22 chr10 92932652 92932786 + 2 NA intron (NM_001319200, intron 8 of 17) L1MEd|LINE|L1 84199 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 386-215 chr21 21775512 21775798 + 2 NA intron (NR_109958, intron 2 of 4) intron (NR_109958, intron 2 of 4) 28670 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 778-6 chr1 182180563 182181106 + 2 NA Intergenic MIR|SINE|MIR -119122 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 149-98 chr7 144063174 144063257 + 2 NA Intergenic Intergenic -11005 NM_001004488 392138 Hs.553787 NM_001004488 ENSG00000221933 OR2A25 OR2A24P|OR2A25P|OR2A27 olfactory receptor family 2 subfamily A member 25 protein-coding 466-137 chr2 122939824 122940185 + 2 NA Intergenic Intergenic 133477 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 464-43 chr12 41381076 41381420 + 2 NA intron (NM_001164595, intron 3 of 9) L1MA9|LINE|L1 -56491 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 339-95 chr11 46721354 46721675 + 2 NA intron (NM_000506, intron 4 of 13) L2c|LINE|L2 2301 NM_001311257 2147 Hs.655207 NM_000506 ENSG00000180210 F2 PT|RPRGL2|THPH1 coagulation factor II, thrombin protein-coding 295-56 chr10 111721289 111721561 + 2 NA Intergenic L1MCa|LINE|L1 462340 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 492 chr1 15581520 15581919 + 2 NA intron (NM_024758, intron 2 of 6) AluSq|SINE|Alu 3332 NM_024758 79814 Hs.461532 NM_024758 ENSG00000116771 AGMAT - agmatinase protein-coding 363-351 chr5 23328805 23329135 + 2 NA Intergenic L1PA16|LINE|L1 -178639 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 397-109 chr16 7092293 7092618 + 2 NA intron (NM_018723, intron 4 of 15) L1ME4a|LINE|L1 -240390 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 361-270 chr22 48174299 48174511 + 2 NA Intergenic Intergenic -99959 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 378-340 chr5 59518518 59518762 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 67858 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 377 chr1 14388504 14388717 + 2 NA intron (NR_149058, intron 3 of 4) L1MA3|LINE|L1 31363 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 315-170 chr16 51247825 51248049 + 2 NA intron (NR_039672, intron 6 of 6) MIR|SINE|MIR -96665 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 366-11 chr1 80602619 80602912 + 2 NA intron (NR_125940, intron 2 of 3) L1MB1|LINE|L1 -38522 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 282-350 chr4 105580058 105580214 + 2 NA intron (NM_001242729, intron 1 of 13) L1PA13|LINE|L1 18545 NR_046840 100874374 Hs.668908 NR_046840 ENSG00000249885 ARHGEF38-IT1 - ARHGEF38 intronic transcript 1 ncRNA 808-49 chr6 163111191 163111765 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -57317 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 269-381 chr7 41326377 41326568 + 2 NA Intergenic Intergenic 224868 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 244-28 chr10 28966784 28966950 + 2 NA Intergenic AluJo|SINE|Alu 120459 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 505-63 chr12 88019843 88020316 + 2 NA intron (NM_001363616, intron 3 of 11) L1PA15|LINE|L1 9322 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 306-359 chr4 76578417 76578590 + 2 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 2952 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 376-239 chr3 36089446 36089719 + 2 NA Intergenic Intergenic -290905 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 469-163 chr21 22039477 22039836 + 2 NA intron (NR_109959, intron 4 of 5) L1PA13|LINE|L1 58803 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 374-403 chr8 134329423 134329641 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -268539 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 210-162 chr21 30063072 30063258 + 2 NA Intergenic L2a|LINE|L2 103640 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 302-436 chr8 34338913 34339098 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -444916 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 523-120 chr19 57444322 57444735 + 2 NA exon (NM_001321953, exon 2 of 2) exon (NM_001321953, exon 2 of 2) 9203 NM_001321954 388567 Hs.467358 NM_001023561 ENSG00000186230 ZNF749 - zinc finger protein 749 protein-coding 260-91 chr12 9015550 9015718 + 2 NA Intergenic L1MA3|LINE|L1 26009 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 222-243 chr3 104186133 104186256 + 2 NA Intergenic Intergenic -662078 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 314-435 chr4 99747457 99747767 + 2 NA Intergenic Intergenic -69215 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 266-359 chr6 47940472 47940702 + 2 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 128102 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 249-135 chr16 5343707 5343893 + 2 NA Intergenic Intergenic -245980 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 314-393 chr3 139968807 139969056 + 2 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 33746 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 326-97 chr11 35963471 35963638 + 2 NA intron (NM_001304264, intron 1 of 5) LOR1b|LTR|ERV1 19492 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 197-25 chr10 35829667 35829771 + 2 NA Intergenic AluJr|SINE|Alu 51417 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 308-241 chr2 117264606 117264898 + 2 NA Intergenic L1M4c|LINE|L1 -549939 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 536-95 chr17 70256486 70256972 + 2 NA Intergenic L2|LINE|L2 87194 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 213-224 chr5 19994303 19994429 + 2 NA intron (NM_001291956, intron 2 of 14) MLT2B5|LTR|ERVL -6166 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 438-66 chr12 42988617 42988917 + 2 NA Intergenic Intergenic -166548 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 564-94 chr2 35289870 35290176 + 2 NA Intergenic L1PBb|LINE|L1 -181382 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 449-256 chr7 49959987 49960299 + 2 NA intron (NM_001159878, intron 7 of 7) AluSx|SINE|Alu 133103 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 317-342 chr4 42926761 42926967 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 33598 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 288-98 chr13 69725964 69726207 + 2 NA intron (NM_001286725, intron 7 of 9) intron (NM_001286725, intron 7 of 9) -381128 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 358-252 chr20 14815878 14816211 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 113474 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 248-349 chr6 62592408 62592620 + 2 NA Intergenic L1M3|LINE|L1 -306287 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 205-278 chr8 105808952 105809081 + 2 NA intron (NR_125796, intron 2 of 7) intron (NR_125796, intron 2 of 7) 251487 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 209-49 chr10 130827307 130827474 + 2 NA Intergenic L1MC3|LINE|L1 135278 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 681-28 chr17 69246254 69246906 + 2 NA 3' UTR (NM_172232, exon 39 of 39) 3' UTR (NM_172232, exon 39 of 39) -1765 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 387-317 chr6 119598019 119598349 + 2 NA intron (NR_134600, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 48376 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 413-85 chr14 73775533 73775827 + 2 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) 11528 NM_001043318 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 314-449 chr5 20375117 20375320 + 2 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 69667 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 323-428 chr5 104577116 104577404 + 2 NA Intergenic Intergenic -522214 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 545-185 chr5 64520515 64520916 + 2 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) 14700 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 407-159 chr2 199829410 199829743 + 2 NA intron (NM_001363886, intron 3 of 4) intron (NM_001363886, intron 3 of 4) 21597 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 431-223 chr5 42954051 42954347 + 2 NA Intergenic Intergenic 39134 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 336-416 chr4 61341420 61341720 + 2 NA intron (NM_001371342, intron 1 of 20) (AT)n|Simple_repeat|Simple_repeat 139398 NM_001371342 588-78 chr2 206345400 206345829 + 2 NA Intergenic AluSx1|SINE|Alu 70604 NM_001285549 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 Slx9 zinc finger DBF-type containing 2 protein-coding 332-577 chr9 112820373 112820701 + 2 NA intron (NM_001012994, intron 3 of 8) L1MB7|LINE|L1 69777 NM_001012994 401548 Hs.522350 NM_001012994 ENSG00000148158 SNX30 ATG24A sorting nexin family member 30 protein-coding 378-350 chr5 145085421 145085688 + 2 NA Intergenic L2|LINE|L2 749788 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 326-554 chr8 129440299 129440513 + 2 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 43736 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 497-71 chr13 103898825 103899297 + 2 NA Intergenic L1M1|LINE|L1 473861 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 209-161 chr2 143141916 143142082 + 2 NA intron (NM_018460, intron 1 of 13) MER102b|DNA|hAT-Charlie 12580 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 278-267 chr3 31025200 31025389 + 2 NA Intergenic L2a|LINE|L2 -130633 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 570-38 chr11 38423613 38424046 + 2 NA Intergenic Intergenic 222527 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 226-266 chr4 185998869 185998997 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -42561 NM_021069 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 584-42 chr14 46414040 46414439 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -57120 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 145-14 chr10 83592469 83592605 + 2 NA Intergenic L1M4a2|LINE|L1 84552 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 444-172 chr4 65989313 65989651 + 2 NA Intergenic Intergenic -287342 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 445-274 chr8 98813183 98813462 + 2 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) 12349 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 735-25 chr15 56519247 56519749 + 2 NA Intergenic L1PA15-16|LINE|L1 -54361 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 241-183 chr2 55775685 55775900 + 2 NA Intergenic Intergenic -81948 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 487-272 chr7 53676502 53676816 + 2 NA intron (NR_038371, intron 5 of 5) AluSx1|SINE|Alu 135272 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 401-248 chr5 7344430 7344655 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 3435 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 726-37 chr19 9497708 9498338 + 2 NA intron (NM_152476, intron 2 of 9) intron (NM_152476, intron 2 of 9) 593 NM_152476 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 308-12 chr1 74125375 74125593 + 2 NA intron (NM_001105659, intron 4 of 7) L1MA3|LINE|L1 72692 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 484-153 chr20 11666786 11667155 + 2 NA Intergenic L2b|LINE|L2 203745 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 400-297 chr5 169027095 169027395 + 2 NA intron (NR_109897, intron 2 of 4) intron (NR_109897, intron 2 of 4) 14018 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 292-433 chr8 92266445 92266718 + 2 NA Intergenic Intergenic -163196 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 333-518 chr6 148080489 148080697 + 2 NA Intergenic Intergenic -191735 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 350-146 chr14 87790818 87791050 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -135640 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 219-241 chr3 112989227 112989422 + 2 NA Intergenic Intergenic -1629 NM_138485 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 350-576 chrX 152323338 152323641 + 2 NA intron (NM_000808, intron 3 of 9) intron (NM_000808, intron 3 of 9) 68810 NR_029521 406897 NR_029521 ENSG00000207957 MIR105-1 MIRN105-1|mir-105-1 microRNA 105-1 ncRNA 333-224 chr2 19285032 19285259 + 2 NA Intergenic L1PREC2|LINE|L1 -63284 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 217-272 chr4 115265520 115265662 + 2 NA Intergenic L1MDa|LINE|L1 -151971 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 329-620 chrX 64294603 64294870 + 2 NA intron (NM_017677, intron 12 of 13) MLT1A0|LTR|ERVL-MaLR -64129 NM_130388 142689 Hs.56281 NM_130388 ENSG00000198881 ASB12 - ankyrin repeat and SOCS box containing 12 protein-coding 563-185 chr8 103630180 103630576 + 2 NA intron (NM_001348497, intron 1 of 22) L1MDa|LINE|L1 -128468 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 528-20 chr1 192217105 192217461 + 2 NA Intergenic L1MA9|LINE|L1 58821 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 426-108 chr18 1553873 1554123 + 2 NA Intergenic Intergenic -194369 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 1037-9 chr2 148223261 148223999 + 2 NA intron (NM_018328, intron 3 of 14) L1MA2|LINE|L1 -202026 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 505-71 chr13 31756994 31757441 + 2 NA intron (NM_130806, intron 1 of 17) intron (NM_130806, intron 1 of 17) 17675 NM_001166058 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 127-33 chr15 67245439 67245540 + 2 NA intron (NM_001271885, intron 1 of 9) L1MB7|LINE|L1 9172 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 291-47 chr10 44059934 44060138 + 2 NA Intergenic Intergenic 147634 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 273-56 chr10 59952531 59952679 + 2 NA Intergenic MER97a|DNA|hAT-Tip100 8308 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 301-470 chr8 140005168 140005462 + 2 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 95220 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 188-102 chr2 114039403 114039563 + 2 NA Intergenic Intergenic -59499 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 206-107 chr2 14292366 14292537 + 2 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 108507 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 300-79 chr11 123881070 123881303 + 2 NA Intergenic L1MC1|LINE|L1 4484 NM_001013743 338661 Hs.98377 NM_001013743 ENSG00000204300 TMEM225 PMP22CD|PPP1R154|SPATA47 transmembrane protein 225 protein-coding 218-111 chr16 8609625 8609816 + 2 NA Intergenic LTR16A2|LTR|ERVL -11978 NR_134608 79091 Hs.306380 NM_024109 ENSG00000067365 METTL22 C16orf68 methyltransferase like 22 protein-coding 355-104 chr11 98892871 98893103 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -127962 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 314-69 chr10 67463502 67463797 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -60239 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 214-105 chr14 100009567 100009712 + 2 NA intron (NM_001330221, intron 1 of 13) intron (NM_001330221, intron 1 of 13) 38217 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 332-310 chr22 27342604 27342906 + 2 NA Intergenic L1ME1|LINE|L1 32104 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 363-485 chrX 58401944 58402256 + 2 NA Intergenic ALR/Alpha|Satellite|centr -491467 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 222-228 chr3 25312214 25312391 + 2 NA intron (NM_001290216, intron 4 of 10) MIRc|SINE|MIR -28500 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 249-310 chr4 163407012 163407183 + 2 NA Intergenic Intergenic 62995 NM_001317091 4889 Hs.519058 NM_006174 ENSG00000164129 NPY5R NPY5-R|NPYR5|NPYY5-R neuropeptide Y receptor Y5 protein-coding 211-262 chr6 138946562 138946756 + 2 NA intron (NM_031922, intron 2 of 19) intron (NM_031922, intron 2 of 19) 41602 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 225-269 chr5 22411901 22412061 + 2 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -198131 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 262-81 chr11 79325135 79325373 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 76855 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 523-181 chr3 96243997 96244453 + 2 NA Intergenic Intergenic -115739 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 535-116 chr19 30158359 30158821 + 2 NA Intergenic Intergenic -213794 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 396-313 chr6 68012609 68012871 + 2 NA Intergenic Intergenic -42611 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 169-26 chr12 37889705 37889828 + 2 NA Intergenic ALR/Alpha|Satellite|centr -427008 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 324-371 chr3 171330049 171330354 + 2 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) 130204 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 264-319 chr5 41095393 41095633 + 2 NA Intergenic Intergenic -24171 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 551-117 chr3 65229987 65230467 + 2 NA Intergenic Intergenic -542227 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 358-230 chr2 118775238 118775419 + 2 NA Intergenic L1MC2|LINE|L1 72855 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 319-348 chr3 165011818 165012075 + 2 NA intron (NM_001041, intron 34 of 47) L1M3|LINE|L1 66550 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 346-530 chr9 105871952 105872168 + 2 NA Intergenic L2a|LINE|L2 177519 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 510-109 chr18 926503 926885 + 2 NA non-coding (NR_146724, exon 2 of 2) non-coding (NR_146724, exon 2 of 2) 1299 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 269-217 chr2 221824486 221824734 + 2 NA Intergenic Intergenic -250408 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 187-150 chr6 60708181 60708320 + 2 NA Intergenic Intergenic -865880 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 293-235 chr21 16479276 16479451 + 2 NA intron (NR_136550, intron 1 of 3) L1MA1|LINE|L1 -56209 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 485-32 chr10 49237648 49238117 + 2 NA Intergenic LTR81A|LTR|Gypsy -49491 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 260-70 chr10 130872715 130872907 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 89857 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 275-137 chr16 80577466 80577718 + 2 NA Intergenic Intergenic -4784 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 406-196 chr3 176909076 176909421 + 2 NA Intergenic L2c|LINE|L2 -92247 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 172-80 chr3 94377893 94377980 + 2 NA Intergenic MIR|SINE|MIR 314875 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 213-193 chr4 17047889 17048092 + 2 NA Intergenic MIRb|SINE|MIR 138067 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 329-72 chr10 91329417 91329621 + 2 NA intron (NR_024467, intron 4 of 4) L1MB7|LINE|L1 -79716 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 751-89 chrX 143107657 143108180 + 2 NA Intergenic Intergenic 81990 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 395-104 chr15 25143598 25143896 + 2 NA intron (NR_146177, intron 61 of 147) MER89-int|LTR|ERV1 8105 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 229-411 chr9 35237886 35238047 + 2 NA intron (NM_006377, intron 5 of 38) intron (NM_006377, intron 5 of 38) 75957 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 645-118 chr8 43230403 43230854 + 2 NA Intergenic FLAM_C|SINE|Alu -61814 NM_001005365 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 388-55 chr10 108218508 108218835 + 2 NA Intergenic L1ME3G|LINE|L1 -149378 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 442-300 chr8 132736491 132736864 + 2 NA intron (NM_144649, intron 5 of 9) AluSz|SINE|Alu 23905 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 357-96 chr13 53935947 53936291 + 2 NA Intergenic Intergenic 120700 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 202-127 chr2 119503800 119503938 + 2 NA intron (NM_002980, intron 1 of 12) L1MC2|LINE|L1 20583 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 257-152 chr18 3912038 3912231 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 26781 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 364-233 chr2 181434480 181434832 + 2 NA Intergenic L1PA17|LINE|L1 -22236 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 349-41 chr1 241287566 241287777 + 2 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 68155 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 133-55 chr4 98194635 98194755 + 2 NA Intergenic MER4B-int|LTR|ERV1 -51219 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 187-31 chr11 81817418 81817555 + 2 NA Intergenic Intergenic 73350 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 296-281 chr22 47495750 47495997 + 2 NA Intergenic MER33|DNA|hAT-Charlie -8762 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 181-59 chr18 50743956 50744125 + 2 NA Intergenic Intergenic 75976 NM_031939 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 270-258 chr4 35796270 35796489 + 2 NA Intergenic L1MA6|LINE|L1 447560 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 212-120 chr17 5407693 5407858 + 2 NA intron (NM_002532, intron 5 of 16) intron (NM_002532, intron 5 of 16) -11866 NM_001160244 84268 Hs.462086 NM_032308 ENSG00000129197 RPAIN HRIP|RIP RPA interacting protein protein-coding 415-276 chr8 50675027 50675347 + 2 NA intron (NR_135797, intron 17 of 20) L1PA8A|LINE|L1 511056 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 490-279 chr8 9683545 9684006 + 2 NA intron (NM_003747, intron 5 of 26) intron (NM_003747, intron 5 of 26) -57897 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 293-100 chr13 40020315 40020510 + 2 NA Intergenic Intergenic -161397 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 235-343 chr7 141808623 141808764 + 2 NA Intergenic L1MB7|LINE|L1 18476 NM_018980 54429 Hs.675370 NM_018980 ENSG00000127366 TAS2R5 T2R5 taste 2 receptor member 5 protein-coding 311-93 chr12 18939372 18939611 + 2 NA Intergenic Intergenic -190242 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 375-62 chr10 112864691 112865030 + 2 NA Intergenic Intergenic 41364 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 552-110 chr2 128674982 128675472 + 2 NA Intergenic L1MD2|LINE|L1 -189373 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 416-171 chr2 79461215 79461459 + 2 NA Intergenic Intergenic 39507 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 222-221 chr21 30441538 30441707 + 2 NA TTS (NM_181623) TTS (NM_181623) 1343 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 285-200 chr2 76692261 76692535 + 2 NA Intergenic Intergenic -293567 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 286-462 chr8 117067143 117067356 + 2 NA intron (NM_001172815, intron 2 of 10) THE1C|LTR|ERVL-MaLR -67746 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 157-99 chr4 159395051 159395167 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 127300 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 316-606 chrX 76045745 76045918 + 2 NA Intergenic MIR|SINE|MIR -127098 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 280-251 chr3 31951995 31952214 + 2 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -29646 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 873-39 chr8 138301770 138302316 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 195218 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 169-22 chr11 98974367 98974511 + 2 NA Intergenic Intergenic -46510 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 229-173 chr2 33550710 33550895 + 2 NA intron (NM_015376, intron 13 of 16) L3b|LINE|CR1 18628 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 490-40 chr10 53103618 53103999 + 2 NA Intergenic Intergenic -332108 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 300-242 chr20 39480653 39480839 + 2 NA Intergenic Intergenic -255998 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 303-389 chr6 22352822 22353003 + 2 NA Intergenic MIR|SINE|MIR -50077 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 356-442 chr7 18244834 18245145 + 2 NA intron (NM_001321872, intron 2 of 11) (ATCT)n|Simple_repeat|Simple_repeat -45103 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 299-105 chr12 70762707 70762970 + 2 NA intron (NM_001207015, intron 2 of 12) MIR|SINE|MIR -8079 NM_001207016 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 360-298 chr3 51827289 51827537 + 2 NA intron (NM_001085479, intron 1 of 6) HAL1|LINE|L1 530 NM_001085479 401067 Hs.729443 NM_001085479 ENSG00000229972 IQCF3 - IQ motif containing F3 protein-coding 341-139 chr13 80838170 80838434 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -180089 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 411-280 chr7 131988976 131989330 + 2 NA Intergenic L1MB3|LINE|L1 78933 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 481-44 chr10 108258013 108258424 + 2 NA Intergenic Intergenic -188925 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 277-287 chr4 60920180 60920339 + 2 NA Intergenic Intergenic -2360 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 232-212 chr20 24717886 24718060 + 2 NA Intergenic L1MB7|LINE|L1 -231296 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 246-211 chr2 164793555 164793740 + 2 NA intron (NM_001365670, intron 2 of 13) intron (NM_001365670, intron 2 of 13) -47102 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 342-342 chr3 181508937 181509130 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -66547 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 170-43 chr14 26597000 26597136 + 2 NA promoter-TSS (NM_001366394) promoter-TSS (NM_001366394) 14 NM_001366394 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 308-294 chr3 67338773 67338966 + 2 NA Intergenic L1PA16|LINE|L1 113405 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 302-85 chr11 101446162 101446348 + 2 NA Intergenic Intergenic 73650 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 159-32 chr15 92188147 92188237 + 2 NA Intergenic Intergenic -205689 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 257-134 chr16 51264774 51265017 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -113623 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 341-370 chr4 30551350 30551535 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -168927 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 279-441 chr9 89918626 89918884 + 2 NA Intergenic Intergenic -50661 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 283-257 chr20 10957801 10957989 + 2 NA Intergenic Intergenic -48623 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 351-455 chr7 62880655 62880870 + 2 NA Intergenic ALR/Alpha|Satellite|centr 423294 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 546-23 chr10 62266852 62267279 + 2 NA intron (NM_001282941, intron 1 of 4) intron (NM_001282941, intron 1 of 4) 1779 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 305-234 chr2 12038558 12038765 + 2 NA intron (NR_110196, intron 2 of 5) MLT1A0|LTR|ERVL-MaLR 31545 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 249-383 chr7 51509565 51509745 + 2 NA Intergenic L1M1|LINE|L1 -116399 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 329-551 chr7 127108677 127108906 + 2 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -50607 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 255-178 chr19 36897402 36897553 + 2 NA intron (NM_001037232, intron 5 of 5) L1M2|LINE|L1 18562 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 358-132 chr15 28872217 28872475 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -13628 NM_001353790 321 Hs.618112 NM_005503 ENSG00000034053 APBA2 D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L amyloid beta precursor protein binding family A member 2 protein-coding 370-77 chr11 15672400 15672766 + 2 NA intron (NM_001293172, intron 1 of 2) intron (NM_001293172, intron 1 of 2) 28698 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 494-112 chr19 449375 449813 + 2 NA intron (NM_012435, intron 1 of 12) L1MC4|LINE|L1 11402 NM_012435 25759 Hs.30965 NM_012435 ENSG00000129946 SHC2 SCK|SHCB|SLI SHC adaptor protein 2 protein-coding 165-103 chr5 147533429 147533561 + 2 NA Intergenic Intergenic -23427 NM_001197294 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 791-48 chr3 131301299 131301718 + 2 NA intron (NM_001353043, intron 17 of 17) L1PA15|LINE|L1 -60337 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 682-2 chr1 69890073 69890475 + 2 NA intron (NM_001370785, intron 7 of 26) Tigger1|DNA|TcMar-Tigger -29048 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 197-62 chr15 24898620 24898810 + 2 NA intron (NM_001349456, intron 2 of 12) intron (NM_001349456, intron 2 of 12) 42203 NM_001349462 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 365-87 chr12 2439930 2440122 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 170250 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 396-128 chr17 68334472 68334784 + 2 NA intron (NM_001352899, intron 2 of 12) MLT1H1|LTR|ERVL-MaLR 42493 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 249-326 chr5 23272405 23272580 + 2 NA Intergenic Intergenic -235117 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 398-184 chr2 233766451 233766721 + 2 NA intron (NM_000463, intron 1 of 4) LTR1A2|LTR|ERV1 6313 NM_000463 54658 Hs.554822 NM_000463 ENSG00000241635 UGT1A1 BILIQTL1|GNT1|HUG-BR1|UDPGT|UDPGT 1-1|UGT1|UGT1A UDP glucuronosyltransferase family 1 member A1 protein-coding 328-373 chr3 154804037 154804206 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -220003 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 616-147 chr6 132630164 132630518 + 2 NA Intergenic L2a|LINE|L2 -6066 NM_001033080 9287 Hs.272382 NM_014626 ENSG00000146378 TAAR2 GPR58|taR-2 trace amine associated receptor 2 (gene/pseudogene) protein-coding 1166-5 chr6 160196068 160196713 + 2 NA Intergenic L1MA5A|LINE|L1 62431 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 353-314 chr3 18194361 18194634 + 2 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 230842 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 310-155 chr15 42312622 42312914 + 2 NA intron (NM_198141, intron 10 of 23) AluSx1|SINE|Alu 38600 NM_198141 2595 Hs.730806 NM_198141 ENSG00000214013 GANC - glucosidase alpha, neutral C protein-coding 620-135 chr7 114621898 114622363 + 2 NA intron (NM_148898, intron 4 of 17) intron (NM_148898, intron 4 of 17) -31215 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 341-52 chr10 10103757 10103968 + 2 NA Intergenic LTR53-int|LTR|ERVL 45140 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 404-54 chr10 108561769 108562142 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -492662 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 360-178 chr18 7587166 7587379 + 2 NA intron (NM_002845, intron 1 of 30) Charlie2a|DNA|hAT-Charlie 19956 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 239-126 chr16 76814348 76814585 + 2 NA Intergenic AluYc|SINE|Alu -54470 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 290-202 chr2 29502038 29502299 + 2 NA intron (NM_004304, intron 4 of 28) L2b|LINE|L2 -26791 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 393-348 chr8 51054127 51054422 + 2 NA Intergenic Intergenic 755171 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 487-291 chr8 92255354 92255817 + 2 NA Intergenic Intergenic -152200 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 146-14 chr10 68953190 68953312 + 2 NA Intergenic Intergenic -2919 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 189-74 chr18 3510932 3511117 + 2 NA intron (NM_001242762, intron 7 of 9) intron (NM_001242762, intron 7 of 9) 44774 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 250-396 chr7 38579671 38579874 + 2 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 51601 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 300-209 chr2 116804446 116804647 + 2 NA Intergenic L1PB1|LINE|L1 -1010145 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 265-250 chr3 176126672 176126915 + 2 NA Intergenic Intergenic -117758 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 476-279 chr8 144882586 144882997 + 2 NA exon (NM_001363101, exon 6 of 6) exon (NM_001363101, exon 6 of 6) 17514 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 544-51 chr11 121520823 121521318 + 2 NA intron (NM_003105, intron 9 of 47) intron (NM_003105, intron 9 of 47) 68756 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 224-172 chr20 10718782 10718992 + 2 NA Intergenic Intergenic -34203 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 171-2 chr1 28455500 28455631 + 2 NA intron (NM_023923, intron 1 of 12) intron (NM_023923, intron 1 of 12) 17415 NM_023923 65979 Hs.225641 NM_023923 ENSG00000204138 PHACTR4 PPP1R124 phosphatase and actin regulator 4 protein-coding 633-22 chr11 78608220 78608655 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -33573 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 303-110 chr13 86576938 86577156 + 2 NA Intergenic ERVL47-int|LTR|ERVL -334873 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 268-441 chr9 92187270 92187507 + 2 NA intron (NM_001350291, intron 3 of 3) intron (NM_001350291, intron 3 of 3) 3768 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 276-67 chr10 104109037 104109304 + 2 NA Intergenic L1ME3|LINE|L1 -12888 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 259-422 chr8 137988156 137988389 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 95273 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 294-217 chr2 72187536 72187792 + 2 NA intron (NR_135773, intron 19 of 21) MER52D|LTR|ERV1 -39802 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 527-156 chr20 59335926 59336396 + 2 NA Intergenic MER53|DNA|hAT 35550 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 292-155 chr15 94625658 94625906 + 2 NA Intergenic L2a|LINE|L2 -229581 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 469-260 chr7 32884357 32884657 + 2 NA intron (NM_015483, intron 1 of 3) AluSq|SINE|Alu 7253 NM_015483 25948 Hs.372541 NM_015483 ENSG00000170852 KBTBD2 BKLHD1 kelch repeat and BTB domain containing 2 protein-coding 264-376 chr6 168785470 168785709 + 2 NA Intergenic Intergenic 178793 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 421-322 chr9 105320939 105321310 + 2 NA intron (NM_001330731, intron 3 of 15) L1ME1|LINE|L1 76473 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 449-126 chr2 104812196 104812545 + 2 NA intron (NR_037883, intron 3 of 3) L1ME3A|LINE|L1 39106 NR_131235 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 450-238 chr5 44012038 44012344 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -376541 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 267-272 chr3 164991551 164991734 + 2 NA intron (NM_001041, intron 43 of 47) L1MA9|LINE|L1 86854 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 230-133 chr15 100382465 100382606 + 2 NA intron (NR_120374, intron 1 of 4) intron (NR_120374, intron 1 of 4) 9596 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 113-20 chr15 50352301 50352357 + 2 NA non-coding (NR_026891, exon 1 of 1) non-coding (NR_026891, exon 1 of 1) -1845 NR_024490 100129387 Hs.659360 NR_024490 GABPB1-AS1 - GABPB1 antisense RNA 1 ncRNA 305-290 chr2 193031207 193031458 + 2 NA Intergenic L1P4|LINE|L1 281487 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 609-131 chr7 93821421 93821985 + 2 NA Intergenic Intergenic 69050 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 320-402 chr4 116918200 116918380 + 2 NA Intergenic L1M1|LINE|L1 167286 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 240-256 chr20 16207441 16207628 + 2 NA Intergenic Intergenic -221652 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 422-70 chr13 97675387 97675678 + 2 NA Intergenic Intergenic 241363 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 384-240 chr3 155116955 155117206 + 2 NA intron (NM_000902, intron 7 of 22) intron (NM_000902, intron 7 of 22) 37069 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 634-38 chr12 16415137 16415717 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 62010 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 282-368 chr5 25805654 25805902 + 2 NA Intergenic L1PA15|LINE|L1 614825 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 462-14 chr1 194651583 194651877 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 1346985 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 516-157 chr21 22511634 22511934 + 2 NA Intergenic Intergenic 413167 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 413-259 chr6 38045430 38045785 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 225880 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 520-224 chr5 4127358 4127702 + 2 NA Intergenic AluSc8|SINE|Alu 531698 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 484-189 chr4 66463212 66463624 + 2 NA Intergenic L1PA6|LINE|L1 186594 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 330-563 chrX 43328938 43329146 + 2 NA Intergenic Intergenic 152048 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 520-321 chr9 9619508 9619905 + 2 NA intron (NM_002839, intron 7 of 45) (AT)n|Simple_repeat|Simple_repeat -179686 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 263-454 chr9 99108709 99108911 + 2 NA intron (NM_004612, intron 1 of 8) intron (NM_004612, intron 1 of 8) 3697 NM_004612 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 596-8 chr1 114851173 114851582 + 2 NA Intergenic Intergenic -3426 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 275-307 chr6 40426418 40426646 + 2 NA intron (NM_020737, intron 2 of 2) intron (NM_020737, intron 2 of 2) 48195 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 468-187 chr22 43697010 43697337 + 2 NA intron (NM_198856, intron 8 of 29) L1ME4a|LINE|L1 115132 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 349-388 chr4 135357565 135357802 + 2 NA Intergenic Intergenic -234124 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 321-441 chr4 171474598 171474843 + 2 NA Intergenic L1ME3A|LINE|L1 164043 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 288-209 chr2 126542923 126543165 + 2 NA Intergenic L1MCa|LINE|L1 -112891 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 343-19 chr1 95592592 95592812 + 2 NA Intergenic Intergenic 82586 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 525-177 chr4 71613328 71613722 + 2 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 170554 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 330-277 chr2 103699066 103699369 + 2 NA Intergenic L1ME4c|LINE|L1 709115 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 294-93 chr12 128229520 128229761 + 2 NA Intergenic MIR|SINE|MIR -37763 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 295-371 chr5 20210701 20210910 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -94746 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 264-20 chr1 191070970 191071175 + 2 NA Intergenic Intergenic 157426 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 279-423 chr8 129244750 129244965 + 2 NA Intergenic Intergenic -3617 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 429-289 chr8 34431365 34431674 + 2 NA Intergenic Intergenic -352402 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 314-22 chr1 97291950 97292188 + 2 NA intron (NR_046590, intron 2 of 4) MER5A|DNA|hAT-Charlie 196146 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 160-15 chr11 83864199 83864286 + 2 NA intron (NM_001142699, intron 16 of 27) intron (NM_001142699, intron 16 of 27) -181817 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 472-290 chr7 8784387 8784819 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 350994 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 296-211 chr2 30848324 30848578 + 2 NA Intergenic L1MA3|LINE|L1 -41005 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 311-325 chr22 38808409 38808621 + 2 NA Intergenic SVA_F|Retroposon|SVA -14372 NM_005740 10126 Hs.632766 NM_005740 ENSG00000100246 DNAL4 MRMV3|PIG27 dynein axonemal light chain 4 protein-coding 420-232 chr5 59160093 59160354 + 2 NA intron (NM_001364602, intron 5 of 5) intron (NM_001364602, intron 5 of 5) 115892 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 218-261 chr5 32163896 32164041 + 2 NA intron (NM_022130, intron 1 of 3) intron (NM_022130, intron 1 of 3) 10351 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 236-228 chr3 83499555 83499743 + 2 NA Intergenic Intergenic 1369926 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 548-198 chr6 86116133 86116517 + 2 NA Intergenic L1MA2|LINE|L1 -437592 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 281-463 chr9 119327620 119327851 + 2 NA intron (NM_014618, intron 1 of 7) L2|LINE|L2 41700 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 327-407 chr5 97414423 97414647 + 2 NA Intergenic Intergenic -90161 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 430-175 chr20 61234538 61234766 + 2 NA Intergenic Intergenic -17609 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 239-367 chr7 32520156 32520365 + 2 NA intron (NM_015060, intron 1 of 15) MER4B-int|LTR|ERV1 24771 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 336-293 chr2 157383660 157383894 + 2 NA Intergenic L1MEd|LINE|L1 -3268 NR_034169 728066 Hs.470311 NR_034169 FAM133DP - family with sequence similarity 133, member A pseudogene pseudo 488-105 chr17 53597390 53597730 + 2 NA Intergenic Intergenic -225367 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 244-289 chr5 22299708 22299877 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -85942 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 268-404 chr8 95810310 95810492 + 2 NA TTS (NR_038201) TTS (NR_038201) 137947 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 353-27 chr1 147795335 147795607 + 2 NA Intergenic L1ME4a|LINE|L1 -22109 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 540-214 chr8 120401411 120401736 + 2 NA intron (NM_014078, intron 6 of 6) L1PA11|LINE|L1 43577 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 300-189 chr2 63182901 63183105 + 2 NA intron (NR_148705, intron 13 of 16) L1PB4|LINE|L1 -63461 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 342-104 chr12 14363754 14363952 + 2 NA Intergenic Intergenic -1779 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 252-104 chr13 94315183 94315360 + 2 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -127280 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 403-293 chr8 4260005 4260255 + 2 NA intron (NM_033225, intron 3 of 69) L1ME3C|LINE|L1 734784 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 472-298 chr7 39170373 39170702 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -156970 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 369-242 chr20 39185998 39186304 + 2 NA Intergenic Intergenic 38597 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 161-133 chr8 135279867 135279986 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 45795 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 393-80 chr13 56487804 56488126 + 2 NA Intergenic Intergenic -652953 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 322-467 chr6 124386739 124387017 + 2 NA intron (NM_153355, intron 3 of 5) HSMAR2|DNA|TcMar-Mariner 103873 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 268-285 chr4 89401629 89401833 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -93931 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 181-111 chr4 118171532 118171683 + 2 NA intron (NM_004784, intron 6 of 13) intron (NM_004784, intron 6 of 13) -107155 NR_034011 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 537-140 chr20 42069303 42069645 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -451097 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 523-278 chr8 129928449 129928945 + 2 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 11114 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 428-213 chr4 75764090 75764429 + 2 NA intron (NM_001290049, intron 5 of 25) intron (NM_001290049, intron 5 of 25) 39737 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 339-446 chr5 53523140 53523385 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -37377 NM_001318051 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 487-106 chr16 52718682 52719036 + 2 NA Intergenic MIRb|SINE|MIR -111884 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 339-233 chr19 28794296 28794590 + 2 NA Intergenic L1MA9|LINE|L1 -66749 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 359-114 chr12 33651589 33651847 + 2 NA Intergenic Intergenic -211899 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 323-489 chr7 35256216 35256410 + 2 NA Intergenic Intergenic -2213 NM_001077653 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 418-160 chr3 79287871 79288159 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -123712 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 323-83 chr11 55075048 55075361 + 2 NA Intergenic ALR/Alpha|Satellite|centr -186951 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 430-138 chr2 17584970 17585357 + 2 NA intron (NM_001366806, intron 1 of 3) intron (NM_001366806, intron 1 of 3) 44467 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 578-22 chr10 14120205 14120695 + 2 NA intron (NR_134578, intron 2 of 3) L2c|LINE|L2 46166 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 293-248 chr22 49263619 49263843 + 2 NA Intergenic Intergenic 279735 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 294-305 chr3 104922886 104923080 + 2 NA Intergenic Intergenic -443730 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 217-97 chr13 33521975 33522142 + 2 NA intron (NM_001243476, intron 4 of 17) intron (NM_001243476, intron 4 of 17) 154736 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 383-99 chr13 85933058 85933312 + 2 NA Intergenic L1PA13|LINE|L1 -133766 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 404-88 chr13 54072298 54072513 + 2 NA Intergenic Intergenic 60466 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 686-80 chr8 73048423 73048929 + 2 NA TTS (NM_003218) TTS (NM_003218) 39812 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 354-285 chr3 19261791 19262008 + 2 NA intron (NM_144633, intron 2 of 15) L1MA9|LINE|L1 53032 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 317-535 chr9 102585491 102585777 + 2 NA intron (NR_103830, intron 2 of 4) intron (NR_103830, intron 2 of 4) 65997 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 312-227 chr2 38471636 38471933 + 2 NA intron (NR_110259, intron 3 of 4) intron (NR_110259, intron 3 of 4) 40490 NR_146454 100996902 Hs.128280 NR_146454 ENSG00000235009 LINC01883 - long intergenic non-protein coding RNA 1883 ncRNA 198-229 chr7 41646308 41646444 + 2 NA Intergenic L1M5|LINE|L1 -47543 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 552-88 chr18 8120884 8121321 + 2 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 245932 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 130-78 chr6 148603063 148603152 + 2 NA Intergenic L1ME1|LINE|L1 93956 NM_001346509 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 802-46 chr3 193287157 193287711 + 2 NA intron (NM_198505, intron 26 of 29) Tigger1|DNA|TcMar-Tigger -19810 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 220-75 chr11 114993090 114993268 + 2 NA Intergenic Intergenic 314652 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 270-291 chr5 29300753 29300984 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 95108 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 389-258 chr4 44591953 44592192 + 2 NA Intergenic Intergenic 59569 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 306-250 chr2 123951312 123951501 + 2 NA Intergenic L1MA1|LINE|L1 73768 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 200-180 chr3 117509379 117509552 + 2 NA Intergenic Intergenic 181460 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 430-254 chr5 133154646 133155043 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 102831 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 214-151 chr2 15529402 15529567 + 2 NA intron (NR_052013, intron 9 of 50) AluJb|SINE|Alu 31850 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 285-407 chr8 74692560 74692720 + 2 NA intron (NR_033830, intron 2 of 5) intron (NR_033830, intron 2 of 5) -13053 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 336-483 chr6 45820832 45821040 + 2 NA Intergenic MER81|DNA|hAT-Blackjack 116661 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 431-224 chr5 55515639 55515901 + 2 NA intron (NR_103485, intron 1 of 6) L2a|LINE|L2 -6844 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 499-260 chr8 64787751 64788120 + 2 NA intron (NM_004820, intron 1 of 5) THE1C|LTR|ERVL-MaLR 10802 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 339-239 chr2 4974541 4974754 + 2 NA Intergenic Intergenic -318425 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 293-355 chr5 153555848 153556050 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 63777 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 447-276 chr8 117154562 117154833 + 2 NA intron (NM_173851, intron 3 of 7) intron (NM_173851, intron 3 of 7) 19702 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 561-196 chr8 33087016 33087478 + 2 NA Intergenic Intergenic 365412 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 366-328 chr4 158039904 158040197 + 2 NA Intergenic L1PA16|LINE|L1 -130702 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 237-23 chr1 218017018 218017225 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -26384 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 478-101 chr15 91104710 91105036 + 2 NA intron (NM_001323039, intron 1 of 12) AluSp|SINE|Alu 3077 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 403-75 chr12 41007516 41007825 + 2 NA intron (NM_001843, intron 17 of 23) LTR9|LTR|ERV1 99313 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 210-306 chr9 26339576 26339736 + 2 NA Intergenic Intergenic 272981 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 506-288 chr8 116434837 116435293 + 2 NA Intergenic Intergenic -110006 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 189-29 chr11 82513063 82513179 + 2 NA Intergenic L2b|LINE|L2 -109208 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 351-265 chr20 49375921 49376178 + 2 NA intron (NM_004975, intron 1 of 1) L2a|LINE|L2 95366 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 275-42 chr10 57884270 57884460 + 2 NA Intergenic Intergenic 383529 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 323-51 chr10 43534224 43534403 + 2 NA Intergenic AluJo|SINE|Alu 34146 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 466-50 chr11 93428789 93429102 + 2 NA intron (NM_181645, intron 13 of 13) L1M5|LINE|L1 98228 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 276-379 chr5 121720093 121720362 + 2 NA Intergenic MER34B|LTR|ERV1 -131655 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 337-411 chr4 132025172 132025351 + 2 NA Intergenic Intergenic 260423 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 466-113 chr19 37822882 37823183 + 2 NA TTS (NR_040015) TTS (NR_040015) 5621 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 430-139 chr2 27140513 27140799 + 2 NA Intergenic L1MB7|LINE|L1 -1246 NM_178553 339779 Hs.136555 NM_178553 ENSG00000186143 PRR30 C2orf53 proline rich 30 protein-coding 258-219 chr2 232568139 232568331 + 2 NA intron (NM_001276336, intron 6 of 6) intron (NM_001276336, intron 6 of 6) 17429 NM_001330202 9470 Hs.292026 NM_004846 ENSG00000135930 EIF4E2 4E-LP|4EHP|EIF4EL3|IF4e|h4EHP eukaryotic translation initiation factor 4E family member 2 protein-coding 247-239 chr21 14556420 14556623 + 2 NA intron (NM_001256370, intron 2 of 8) intron (NM_001256370, intron 2 of 8) -10161 NM_001286523 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 187-25 chr10 96126915 96127085 + 2 NA Intergenic Intergenic -2715 NM_001278526 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 613-8 chr1 94389101 94389611 + 2 NA Intergenic MER9a3|LTR|ERVK -29021 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 518-82 chr14 54065377 54065792 + 2 NA Intergenic L2a|LINE|L2 -108693 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 287-104 chr11 132890899 132891129 + 2 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 52623 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 559-36 chr12 60966533 60966974 + 2 NA Intergenic Intergenic 1226086 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 409-213 chr4 15031631 15031966 + 2 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) 29317 NM_182485 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 247-162 chr18 2518675 2518886 + 2 NA Intergenic Intergenic 52725 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 1100-7 chr14 46378083 46379039 + 2 NA intron (NR_102702, intron 3 of 3) MLT1F|LTR|ERVL-MaLR -92798 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 431-246 chr6 64611905 64612235 + 2 NA intron (NM_001292009, intron 24 of 43) intron (NM_001292009, intron 24 of 43) -689348 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 507-30 chr10 53196486 53196929 + 2 NA Intergenic L1MB1|LINE|L1 -425007 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 486-86 chr14 71255351 71255779 + 2 NA Intergenic L1MC2|LINE|L1 -64911 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 390-289 chr5 33204522 33204894 + 2 NA Intergenic Intergenic -25027 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 296-396 chr6 48329946 48330173 + 2 NA Intergenic Intergenic -261370 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 337-35 chr1 230035332 230035593 + 2 NA Intergenic L1M4|LINE|L1 -22327 NM_001291866 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 343-401 chr4 109201784 109202007 + 2 NA intron (NM_198721, intron 3 of 36) L1MC|LINE|L1 100763 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 284-40 chr10 58662355 58662613 + 2 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -52531 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 369-322 chr5 41595236 41595593 + 2 NA Intergenic L1MEd|LINE|L1 -84813 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 213-84 chr14 35610837 35610981 + 2 NA intron (NM_014990, intron 34 of 40) L1MB8|LINE|L1 76745 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 377-258 chr21 32892199 32892422 + 2 NA Intergenic Intergenic -66578 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 473-135 chr2 81963217 81963536 + 2 NA Intergenic Intergenic -496430 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 176-111 chr5 112306735 112306852 + 2 NA intron (NM_001347887, intron 2 of 23) intron (NM_001347887, intron 2 of 23) 78510 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 244-85 chr14 29123455 29123619 + 2 NA Intergenic Intergenic -337750 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 317-310 chr3 95265702 95265930 + 2 NA Intergenic Intergenic 327553 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 240-181 chr17 70838573 70838745 + 2 NA Intergenic Intergenic 363520 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 275-2 chr1 41879232 41879451 + 2 NA intron (NR_038261, intron 2 of 3) intron (NR_038261, intron 2 of 3) 39581 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 332-26 chr1 166023985 166024296 + 2 NA Intergenic L1MEg|LINE|L1 116219 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 256-398 chr7 111444048 111444281 + 2 NA intron (NM_001350961, intron 4 of 7) intron (NM_001350961, intron 4 of 7) 118127 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 183-113 chr5 11585207 11585351 + 2 NA intron (NM_001288717, intron 2 of 20) Chap1_Mam|DNA|hAT-Charlie 3638 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 326-311 chr22 22234043 22234222 + 2 NA Intergenic Intergenic -10654 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 187-143 chr5 123961140 123961301 + 2 NA Intergenic Intergenic 415803 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 509-99 chr18 47434779 47435166 + 2 NA intron (NR_147192, intron 1 of 2) L1ME4c|LINE|L1 54476 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 330-224 chr18 38458731 38458956 + 2 NA Intergenic Intergenic 801708 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 332-195 chr17 13146333 13146525 + 2 NA Intergenic L1MC|LINE|L1 -128365 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 293-148 chr16 80218371 80218532 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -322283 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 272-175 chr2 22350105 22350297 + 2 NA Intergenic Intergenic -186278 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 156-95 chr6 111340769 111340906 + 2 NA intron (NM_001286431, intron 24 of 34) intron (NM_001286431, intron 24 of 34) 81498 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 348-201 chr18 40172997 40173295 + 2 NA Intergenic Intergenic 106860 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 215-106 chr16 75152740 75152916 + 2 NA intron (NM_001318475, intron 1 of 3) intron (NM_001318475, intron 1 of 3) 3777 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 281-217 chr2 111625397 111625563 + 2 NA Intergenic AluY|SINE|Alu -130319 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 347-391 chr5 42462956 42463194 + 2 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 38094 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 524-271 chr8 129279824 129280172 + 2 NA Intergenic AluSz6|SINE|Alu -38758 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 273-237 chr2 149303074 149303337 + 2 NA Intergenic L2a|LINE|L2 -26780 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 294-32 chr10 33664439 33664650 + 2 NA Intergenic LOR1b|LTR|ERV1 108136 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 219-316 chr6 86621331 86621487 + 2 NA Intergenic L1MA5|LINE|L1 -316119 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 253-362 chr6 101151817 101152033 + 2 NA Intergenic L2b|LINE|L2 -247060 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 378-419 chr7 132730373 132730616 + 2 NA Intergenic L1ME4b|LINE|L1 -28476 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 319-585 chrX 65429046 65429305 + 2 NA Intergenic L1PA10|LINE|L1 -59560 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 364-263 chr22 42701823 42702056 + 2 NA intron (NM_001318038, intron 1 of 2) intron (NM_001318038, intron 1 of 2) 18931 NR_146459 53947 Hs.105956 NM_017436 ENSG00000128274 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase (P blood group) protein-coding 551-217 chr8 100390865 100391312 + 2 NA Intergenic L1M4|LINE|L1 8325 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 256-271 chr3 116374371 116374542 + 2 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 14432 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 227-5 chr1 49498563 49498727 + 2 NA intron (NR_136623, intron 2 of 12) L1MA8|LINE|L1 -26560 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 320-227 chr18 51863024 51863282 + 2 NA Intergenic L2a|LINE|L2 471111 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 339-234 chr19 43890449 43890667 + 2 NA Intergenic L1MEg|LINE|L1 -10422 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 227-136 chr17 58858872 58859041 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 103087 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 308-430 chr6 98466486 98466709 + 2 NA Intergenic Intergenic 365103 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 522-15 chr10 28820111 28820457 + 2 NA Intergenic Intergenic -24234 NR_038376 100507605 Hs.119207 NR_038374 ENSG00000235824 LINC00837 - long intergenic non-protein coding RNA 837 ncRNA 367-400 chr6 141009842 141010092 + 2 NA Intergenic Intergenic 326153 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 664-82 chr4 153893472 153893992 + 2 NA Intergenic Intergenic -104649 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 323-581 chr9 73749044 73749235 + 2 NA Intergenic L1PA16|LINE|L1 597274 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 156-7 chr1 218835623 218835721 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 82839 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 222-69 chr11 81366496 81366661 + 2 NA Intergenic Intergenic 524258 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 201-164 chr3 158051509 158051695 + 2 NA Intergenic MIR1_Amn|SINE|MIR 54561 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 333-207 chr18 65165680 65165895 + 2 NA Intergenic Intergenic -584465 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 329-394 chr4 10755509 10755768 + 2 NA Intergenic Intergenic -70870 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 375-43 chr10 39361847 39362067 + 2 NA Intergenic ALR/Alpha|Satellite|centr 665361 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 321-213 chr16 47151856 47152076 + 2 NA intron (NR_110904, intron 1 of 3) L1MD|LINE|L1 7898 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 472-289 chr6 164565390 164565686 + 2 NA Intergenic Intergenic 256525 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 408-291 chr6 49755636 49755982 + 2 NA Intergenic L1PREC2|LINE|L1 -11354 NM_001190986 10321 Hs.404466 NM_006061 ENSG00000096006 CRISP3 Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 cysteine rich secretory protein 3 protein-coding 303-452 chr8 83371484 83371726 + 2 NA Intergenic L2a|LINE|L2 -32153 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 232-298 chr5 31209139 31209337 + 2 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 15552 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 312-433 chr5 127137513 127137670 + 2 NA Intergenic L1MB5|LINE|L1 -64099 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 233-229 chr3 23325207 23325433 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 121993 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 296-47 chr10 58128734 58128948 + 2 NA Intergenic L1MC5a|LINE|L1 139053 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 292-222 chr2 107103153 107103336 + 2 NA Intergenic Intergenic -216135 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 541-231 chr8 49335372 49335751 + 2 NA Intergenic AluY|SINE|Alu 176619 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 536-187 chr5 118244475 118244805 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -37934 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 303-200 chr2 41486084 41486379 + 2 NA Intergenic L1ME1|LINE|L1 -391324 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 272-342 chr5 51020198 51020435 + 2 NA Intergenic Intergenic -50129 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 359-417 chr6 6270197 6270414 + 2 NA intron (NM_000129, intron 3 of 14) intron (NM_000129, intron 3 of 14) 50386 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 257-217 chr2 167046989 167047240 + 2 NA intron (NM_152381, intron 2 of 10) L1M5|LINE|L1 93841 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 413-22 chr1 178361006 178361401 + 2 NA intron (NM_004841, intron 1 of 15) intron (NM_004841, intron 1 of 15) 19752 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 254-220 chr20 6955066 6955287 + 2 NA Intergenic Intergenic 187490 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 206-74 chr15 59824521 59824698 + 2 NA Intergenic L1ME3E|LINE|L1 -135289 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 439-172 chr22 28776369 28776749 + 2 NA intron (NM_001284264, intron 2 of 3) AluSz|SINE|Alu 3422 NM_001284265 150275 Hs.406460 NM_173510 ENSG00000159873 CCDC117 dJ366L4.1 coiled-coil domain containing 117 protein-coding 397-358 chr9 99838639 99839001 + 2 NA intron (NM_006981, intron 5 of 7) MER5A|DNA|hAT-Charlie 16935 NM_006981 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 317-332 chr4 14670721 14670990 + 2 NA intron (NR_126435, intron 3 of 6) intron (NR_126435, intron 3 of 6) 217314 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 256-183 chr19 36444146 36444339 + 2 NA TTS (NM_001145343) TTS (NM_001145343) 23068 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 471-268 chr8 108561652 108562036 + 2 NA Intergenic Intergenic 118220 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 469-57 chr11 103634065 103634482 + 2 NA Intergenic LTR48B|LTR|ERV1 -215633 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 337-141 chr13 106585565 106585841 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -17566 NM_018011 55082 Hs.508644 NM_018011 ENSG00000134884 ARGLU1 - arginine and glutamate rich 1 protein-coding 219-273 chr5 8440875 8441032 + 2 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 16611 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 468-153 chr2 111981155 111981452 + 2 NA intron (NM_006343, intron 7 of 18) intron (NM_006343, intron 7 of 18) -73966 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 706-18 chr12 73747096 73747469 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 545349 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 349-444 chr6 55063003 55063272 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -43323 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 503-77 chr12 102679011 102679430 + 2 NA Intergenic Intergenic 145179 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 444-109 chr19 9296065 9296379 + 2 NA exon (NM_198535, exon 6 of 6) exon (NM_198535, exon 6 of 6) 13616 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 255-122 chr15 45842020 45842241 + 2 NA intron (NR_135680, intron 1 of 4) intron (NR_135680, intron 1 of 4) 136935 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 492-245 chr7 112129554 112129934 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 76655 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 310-519 chr8 88241405 88241605 + 2 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 85978 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 329-235 chr18 33032385 33032681 + 2 NA intron (NM_001308126, intron 21 of 23) intron (NM_001308126, intron 21 of 23) -259510 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 510-236 chr5 159569474 159569871 + 2 NA Intergenic L1ME2|LINE|L1 -103396 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 271-447 chr8 99754188 99754342 + 2 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 139442 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 372-78 chr11 83286135 83286383 + 2 NA 5' UTR (NM_021825, exon 1 of 9) 5' UTR (NM_021825, exon 1 of 9) 148 NM_001286116 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 335-351 chr3 87463682 87463900 + 2 NA Intergenic L1MA3|LINE|L1 -187207 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 383-12 chr1 94116021 94116272 + 2 NA intron (NM_000350, intron 1 of 49) intron (NM_000350, intron 1 of 49) 5002 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 356-411 chr5 126068200 126068425 + 2 NA Intergenic L1MD2|LINE|L1 -111265 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 157-111 chr6 103731996 103732140 + 2 NA Intergenic Intergenic 1127478 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 617-133 chr8 83747031 83747626 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger 343570 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 612-41 chr14 82525843 82526398 + 2 NA Intergenic Intergenic -116512 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 309-59 chr10 77948152 77948359 + 2 NA Intergenic AluJr|SINE|Alu 21443 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 428-269 chr7 15281068 15281352 + 2 NA intron (NM_001004320, intron 12 of 12) L1PB3|LINE|L1 280805 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 477-226 chr4 83621613 83621917 + 2 NA Intergenic FLAM_C|SINE|Alu 85657 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 340-553 chr8 124264334 124264545 + 2 NA Intergenic L1MB2|LINE|L1 -17041 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 617-88 chr3 94279077 94279486 + 2 NA Intergenic Intergenic 216220 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 332-119 chr12 30271774 30272009 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 405353 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 441-271 chr8 138040523 138040896 + 2 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 42836 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 537-33 chr10 118770131 118770558 + 2 NA Intergenic MIRb|SINE|MIR -15374 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 184-79 chr2 8472174 8472340 + 2 NA Intergenic MIRc|SINE|MIR 111535 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 267-180 chr2 49731925 49732124 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 242179 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 593-91 chr20 52418836 52419268 + 2 NA Intergenic Intergenic -201786 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 169-131 chr8 40653122 40653255 + 2 NA intron (NM_001135731, intron 4 of 5) L1MB7|LINE|L1 244638 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 356-99 chr12 15532584 15532777 + 2 NA intron (NM_030667, intron 12 of 26) intron (NM_030667, intron 12 of 26) -13931 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 525-153 chr3 16496038 16496489 + 2 NA intron (NM_015150, intron 1 of 9) MER63A|DNA|hAT-Blackjack 17436 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 293-49 chr10 109213342 109213621 + 2 NA Intergenic Intergenic 709765 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 284-280 chr4 32797040 32797216 + 2 NA Intergenic Intergenic 446090 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 344-167 chr16 8480299 8480637 + 2 NA Intergenic Intergenic 109370 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 278-221 chr2 103383248 103383488 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -398939 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 395-282 chr5 158447315 158447669 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -37719 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 370-95 chr11 94697682 94697948 + 2 NA intron (NR_135096, intron 1 of 6) L1ME2z|LINE|L1 42540 NR_135094 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 510-35 chr10 116450720 116451125 + 2 NA intron (NM_001011709, intron 4 of 11) L1M3d|LINE|L1 23075 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 287-87 chr11 38592890 38593163 + 2 NA Intergenic Intergenic 53330 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 237-78 chr12 60609609 60609800 + 2 NA Intergenic L1MA7|LINE|L1 920334 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 246-160 chr17 82888395 82888584 + 2 NA intron (NM_005993, intron 15 of 38) intron (NM_005993, intron 15 of 38) -48467 NM_024702 79755 Hs.464391 NM_024702 ENSG00000141579 ZNF750 ZFP750 zinc finger protein 750 protein-coding 362-197 chr18 10216623 10216959 + 2 NA Intergenic Intergenic 197579 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 372-390 chr5 16017537 16017743 + 2 NA Intergenic Intergenic 82458 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 317-194 chr18 5180667 5180875 + 2 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 16486 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 139-5 chr10 19999917 20000029 + 2 NA intron (NM_032812, intron 1 of 13) MIR|SINE|MIR 183541 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 330-100 chr11 81781580 81781825 + 2 NA Intergenic Intergenic 109134 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 197-227 chr9 80628368 80628497 + 2 NA Intergenic Intergenic 653409 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 237-52 chr11 34885008 34885203 + 2 NA intron (NM_015957, intron 5 of 6) (TA)n|Simple_repeat|Simple_repeat -31025 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 287-350 chr6 54183396 54183637 + 2 NA intron (NM_001281746, intron 9 of 11) intron (NM_001281746, intron 9 of 11) 72073 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 313-436 chr5 89144192 89144384 + 2 NA intron (NR_136221, intron 4 of 6) intron (NR_136221, intron 4 of 6) -240183 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 453-174 chr4 32219470 32219775 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -131416 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 320-168 chr15 51276502 51276717 + 2 NA intron (NM_000103, intron 1 of 9) intron (NM_000103, intron 1 of 9) 1533 NM_001347252 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 434-287 chr8 107105127 107105555 + 2 NA Intergenic Intergenic 231174 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 174-62 chr2 49469421 49469588 + 2 NA Intergenic L1M2|LINE|L1 -314977 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 413-100 chr15 87158918 87159213 + 2 NA Intergenic L3|LINE|CR1 -170639 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 486-251 chr5 166617544 166617899 + 2 NA Intergenic L2a|LINE|L2 308649 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 290-158 chr16 66051469 66051678 + 2 NA Intergenic HAL1|LINE|L1 -315118 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 427-5 chr1 66451260 66451576 + 2 NA Intergenic Intergenic -82175 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 481-156 chr2 165785741 165786049 + 2 NA intron (NM_004482, intron 1 of 10) HAL1|LINE|L1 8352 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 438-74 chr14 35196590 35196962 + 2 NA intron (NM_014672, intron 5 of 7) intron (NM_014672, intron 5 of 7) 74224 NM_001256680 9692 Hs.458487 NM_014672 ENSG00000100890 PRORP KIAA0391|MRPP3 protein only RNase P catalytic subunit protein-coding 603-135 chr5 141265183 141265668 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 20030 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 212-348 chr9 75960801 75961004 + 2 NA intron (NR_120409, intron 2 of 19) intron (NR_120409, intron 2 of 19) 70229 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 361-337 chr4 158639098 158639311 + 2 NA intron (NM_001253730, intron 12 of 16) intron (NM_001253730, intron 12 of 16) 32683 NM_001008393 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 156-51 chr2 55369853 55369987 + 2 NA intron (NM_001254943, intron 5 of 33) intron (NM_001254943, intron 5 of 33) 49936 NM_001254943 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 232-26 chr10 44515235 44515416 + 2 NA Intergenic Intergenic -130228 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 332-362 chr4 10816048 10816265 + 2 NA Intergenic L2a|LINE|L2 -131388 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 645-104 chr6 3541420 3541896 + 2 NA Intergenic Intergenic -85099 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 445-25 chr10 58224241 58224637 + 2 NA intron (NM_152230, intron 3 of 5) intron (NM_152230, intron 3 of 5) 43455 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 200-116 chr19 37610444 37610613 + 2 NA intron (NM_001172225, intron 4 of 4) L2c|LINE|L2 15652 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 386-340 chr8 16481331 16481681 + 2 NA Intergenic MIRb|SINE|MIR -288715 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 208-219 chr5 150349448 150349603 + 2 NA Intergenic Intergenic -8114 NM_001135243 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 350-433 chr6 41087003 41087280 + 2 NA intron (NM_021705, intron 3 of 8) L1ME3Cz|LINE|L1 10646 NM_001329684 221443 Hs.227457 NM_145063 ENSG00000124596 OARD1 C6orf130|TARG1|dJ34B21.3 O-acyl-ADP-ribose deacylase 1 protein-coding 173-119 chr6 135624720 135624871 + 2 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 126994 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 481-314 chr9 37571323 37571756 + 2 NA intron (NM_012166, intron 1 of 10) LTR16A1|LTR|ERVL 4841 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 223-183 chr20 19149083 19149277 + 2 NA Intergenic L1MC2|LINE|L1 -63462 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 428-118 chr2 23065487 23065820 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -319526 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 312-396 chr4 187390503 187390708 + 2 NA intron (NR_038931, intron 1 of 4) L2a|LINE|L2 19957 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 242-333 chr6 9862490 9862684 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -541915 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 379-77 chr12 131000182 131000483 + 2 NA intron (NM_198827, intron 8 of 24) intron (NM_198827, intron 8 of 24) -6356 NR_131951 105755954 Hs.677534 NR_131950 ADGRD1-AS1 LACAT8 ADGRD1 antisense RNA 1 ncRNA 316-362 chr3 122842931 122843175 + 2 NA intron (NM_032839, intron 4 of 8) L1ME5|LINE|L1 -43460 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 637-90 chr5 14785227 14785769 + 2 NA intron (NM_054027, intron 1 of 11) MSTB|LTR|ERVL-MaLR 40514 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 158-4 chr1 162921146 162921248 + 2 NA Intergenic Intergenic -52382 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 215-112 chr17 52204946 52205118 + 2 NA Intergenic L2b|LINE|L2 -45015 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 460-293 chr8 113586772 113587087 + 2 NA Intergenic Intergenic -149990 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 290-145 chr15 91993612 91993879 + 2 NA intron (NR_135775, intron 2 of 10) MLT1F|LTR|ERVL-MaLR 139441 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 323-399 chr5 18812956 18813274 + 2 NA Intergenic L1M4|LINE|L1 1005841 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 290-93 chr11 132075643 132075861 + 2 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) 164934 NM_001144059 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 425-117 chr18 61060908 61061164 + 2 NA Intergenic L1ME3A|LINE|L1 -272394 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 270-62 chr11 82564061 82564235 + 2 NA Intergenic MIRb|SINE|MIR -160235 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 308-107 chr12 40267513 40267758 + 2 NA intron (NM_198578, intron 14 of 50) intron (NM_198578, intron 14 of 50) 42638 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 280-436 chr9 38176707 38176975 + 2 NA Intergenic L1MC4|LINE|L1 -107614 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 380-139 chr15 86341710 86341925 + 2 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -24849 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 354-400 chr6 61499819 61500097 + 2 NA Intergenic ALR/Alpha|Satellite|centr -74172 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 442-61 chr12 124129175 124129606 + 2 NA intron (NM_001347902, intron 2 of 4) AluJb|SINE|Alu 156175 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 667-83 chr5 3994248 3994771 + 2 NA Intergenic Intergenic 398677 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 398-67 chr12 18487953 18488271 + 2 NA intron (NM_001288774, intron 18 of 32) intron (NM_001288774, intron 18 of 32) 226572 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 475-251 chr7 3114220 3114613 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 44157 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 461-73 chr13 111245924 111246296 + 2 NA intron (NM_001330597, intron 8 of 18) intron (NM_001330597, intron 8 of 18) 4936 NM_001354055 8874 Hs.508738 NM_003899 ENSG00000102606 ARHGEF7 BETA-PIX|COOL-1|COOL1|Nbla10314|P50|P50BP|P85|P85COOL1|P85SPR|PAK3|PIXB Rho guanine nucleotide exchange factor 7 protein-coding 246-151 chr17 47258285 47258463 + 2 NA intron (NM_000212, intron 1 of 14) intron (NM_000212, intron 1 of 14) 4532 NM_000212 3690 Hs.218040 NM_000212 ENSG00000259207 ITGB3 BDPLT16|BDPLT2|CD61|GP3A|GPIIIa|GT integrin subunit beta 3 protein-coding 130-41 chr2 112899884 112899953 + 2 NA Intergenic Intergenic -13053 NM_173202 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 419-71 chr12 55202345 55202593 + 2 NA Intergenic L1MA3|LINE|L1 -18556 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 212-88 chr12 98530531 98530709 + 2 NA intron (NM_001032284, intron 2 of 5) intron (NM_001032284, intron 2 of 5) -14394 NR_027157 100128191 Hs.594042 NR_027157 ENSG00000257167 TMPO-AS1 - TMPO antisense RNA 1 ncRNA 277-6 chr1 56540878 56541146 + 2 NA intron (NM_003713, intron 1 of 5) L2c|LINE|L2 38551 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 275-12 chr1 106127632 106127870 + 2 NA Intergenic Intergenic -99498 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 339-164 chr14 70428685 70428911 + 2 NA Intergenic L1PA14|LINE|L1 -11708 NM_018373 55333 Hs.443661 NM_018373 ENSG00000213463 SYNJ2BP ARIP2|OMP25 synaptojanin 2 binding protein protein-coding 347-106 chr12 119134955 119135256 + 2 NA intron (NM_194286, intron 8 of 12) intron (NM_194286, intron 8 of 12) 41379 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 410-324 chr8 144203809 144204116 + 2 NA intron (NM_001288814, intron 11 of 41) L1ME3G|LINE|L1 55317 NM_001288814 727957 Hs.443139 NM_032450 ENSG00000179832 MROH1 HEATR7A maestro heat like repeat family member 1 protein-coding 171-108 chr5 124531164 124531291 + 2 NA Intergenic Intergenic -92707 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 183-23 chr11 41995586 41995704 + 2 NA Intergenic Intergenic 89813 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 355-127 chr12 29874365 29874616 + 2 NA Intergenic MIR|SINE|MIR -89731 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 555-45 chr12 113544557 113544954 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 72752 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 225-174 chr20 6555259 6555415 + 2 NA Intergenic L1MC1|LINE|L1 128605 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 188-4 chr1 40444133 40444273 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -5861 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 320-272 chr2 117723915 117724152 + 2 NA Intergenic Intergenic -90658 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 303-134 chr14 84576857 84577074 + 2 NA Intergenic Intergenic -694967 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 267-432 chr8 125589391 125589556 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 157264 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 302-254 chr21 7949859 7950037 + 2 NA Intergenic (CATTC)n|Satellite|Satellite -120316 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 647-72 chr4 31928439 31929064 + 2 NA Intergenic Intergenic -68628 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 387-351 chr7 144974189 144974495 + 2 NA Intergenic Intergenic -138289 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 429-131 chr18 66245437 66245730 + 2 NA Intergenic Intergenic 358507 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 326-352 chr3 124634349 124634550 + 2 NA intron (NM_001323001, intron 3 of 14) intron (NM_001323001, intron 3 of 14) 49790 NM_001323001 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 631-133 chrUn_KI270442v1 144647 145217 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 393-210 chr3 5216598 5216838 + 2 NA 3' UTR (NM_014674, exon 12 of 12) 3' UTR (NM_014674, exon 12 of 12) 29011 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 138-77 chr6 145578630 145578766 + 2 NA Intergenic L1MA10|LINE|L1 108179 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 324-304 chr20 2314826 2315118 + 2 NA intron (NM_003245, intron 5 of 12) intron (NM_003245, intron 5 of 12) 18971 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 379-273 chr5 108160495 108160795 + 2 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 221453 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 344-3 chr1 13946768 13947047 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 197492 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 349-315 chr22 34511407 34511589 + 2 NA Intergenic LTR33A|LTR|ERVL 486418 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 316-18 chr1 96626101 96626343 + 2 NA Intergenic CR1_Mam|LINE|CR1 -95383 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 437-15 chr1 238111800 238112216 + 2 NA Intergenic Intergenic -221086 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 393-227 chr3 130362788 130363001 + 2 NA intron (NM_001278298, intron 1 of 40) L1MC1|LINE|L1 17378 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 353-566 chrX 45350406 45350683 + 2 NA Intergenic L1MB7|LINE|L1 -149668 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 438-242 chr6 78621530 78621875 + 2 NA Intergenic Intergenic -82393 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 136-69 chr5 32629011 32629102 + 2 NA Intergenic Intergenic 43499 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 237-59 chr11 92592763 92592885 + 2 NA intron (NM_001008781, intron 2 of 24) L1MB2|LINE|L1 240728 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 662-8 chr10 44871273 44871821 + 2 NA intron (NR_033842, intron 2 of 7) intron (NR_033842, intron 2 of 7) -39769 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 333-488 chr5 173165466 173165738 + 2 NA Intergenic MIRb|SINE|MIR 21071 NM_013978 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 398-41 chr10 59749817 59750049 + 2 NA intron (NM_001304732, intron 1 of 3) intron (NM_001304732, intron 1 of 3) 3522 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 513-188 chr3 101433624 101434024 + 2 NA intron (NM_020654, intron 4 of 23) L1MA1|LINE|L1 79388 NM_001077203 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 494-133 chr2 90198558 90198941 + 2 NA Intergenic Intergenic -560842 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 552-42 chr12 17113757 17114278 + 2 NA Intergenic L1MCa|LINE|L1 125270 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 220-395 chr9 110390189 110390316 + 2 NA intron (NM_153366, intron 40 of 47) intron (NM_153366, intron 40 of 47) -52368 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 467-109 chr17 69164903 69165274 + 2 NA intron (NM_080282, intron 26 of 39) intron (NM_080282, intron 26 of 39) -23193 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 382-14 chr1 115293831 115294068 + 2 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 10915 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 325-215 chr17 33139439 33139628 + 2 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 146682 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 424-179 chr3 118203477 118203775 + 2 NA Intergenic L1MC3|LINE|L1 -438142 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 208-108 chr2 11844012 11844165 + 2 NA Intergenic AluY|SINE|Alu -7102 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 501-267 chr8 117233066 117233504 + 2 NA Intergenic Intergenic 98290 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 514-232 chr5 122605542 122606024 + 2 NA Intergenic AluSc|SINE|Alu -21183 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 437-264 chr8 21315589 21315908 + 2 NA Intergenic Intergenic 17509 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 487-309 chr9 100722596 100723078 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy 144758 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 213-242 chr5 156198482 156198654 + 2 NA Intergenic MIR|SINE|MIR -128189 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 225-268 chr5 20289510 20289692 + 2 NA intron (NM_001349556, intron 1 of 13) MIRc|SINE|MIR -15950 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 582-114 chr4 103768469 103768939 + 2 NA Intergenic L1P4|LINE|L1 -48719 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 550-253 chrX 137002533 137002943 + 2 NA Intergenic Intergenic 28936 NM_054021 83550 Hs.350569 NM_054021 ENSG00000165370 GPR101 GPCR6|PAGH2|PITA2 G protein-coupled receptor 101 protein-coding 535-47 chr12 8989854 8990302 + 2 NA intron (NM_005810, intron 1 of 4) intron (NM_005810, intron 1 of 4) 453 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 310-580 chrX 146405914 146406133 + 2 NA Intergenic L1M6|LINE|L1 -378151 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 471-21 chr10 16196120 16196568 + 2 NA Intergenic Intergenic -240599 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 582-112 chr4 66782441 66782895 + 2 NA Intergenic AluSq4|SINE|Alu 505844 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 180-77 chr2 17826820 17826924 + 2 NA Intergenic Intergenic 10412 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 277-32 chr1 229356031 229356289 + 2 NA Intergenic L1MB3|LINE|L1 -13113 NM_145257 126731 Hs.585011 NM_145257 ENSG00000154429 CCSAP C1orf96|CSAP centriole, cilia and spindle associated protein protein-coding 260-427 chr8 51258589 51258832 + 2 NA Intergenic Intergenic 550735 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 402-158 chr2 114901015 114901362 + 2 NA intron (NM_001321910, intron 2 of 26) AluYj4|SINE|Alu -67640 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 611-23 chr11 58312953 58313386 + 2 NA Intergenic Intergenic -44909 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 198-239 chr7 108754494 108754674 + 2 NA Intergenic L2|LINE|L2 130003 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 300-153 chr17 52670218 52670472 + 2 NA Intergenic L1ME3G|LINE|L1 -191776 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 184-3 chr1 34801039 34801168 + 2 NA Intergenic L2b|LINE|L2 8104 NM_002060 2701 Hs.296310 NM_002060 ENSG00000187513 GJA4 CX37 gap junction protein alpha 4 protein-coding 514-193 chr3 171162330 171162763 + 2 NA intron (NM_001161563, intron 10 of 31) intron (NM_001161563, intron 10 of 31) -55787 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 262-136 chr14 85707528 85707712 + 2 NA Intergenic Intergenic 174271 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 496-278 chr8 54792125 54792528 + 2 NA Intergenic L1M3b|LINE|L1 176230 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 274-421 chrX 67682080 67682314 + 2 NA intron (NM_001011645, intron 3 of 8) intron (NM_001011645, intron 3 of 8) 137574 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 339-441 chr5 21582571 21582887 + 2 NA intron (NR_027026, intron 4 of 4) intron (NR_027026, intron 4 of 4) 123249 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 920-21 chr5 24661074 24661739 + 2 NA Intergenic LTR48|LTR|ERV1 -16428 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 193-164 chr5 24924456 24924593 + 2 NA Intergenic Intergenic -83941 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 213-293 chr8 137988484 137988617 + 2 NA intron (NR_161374, intron 2 of 7) MER81|DNA|hAT-Blackjack 94995 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 446-311 chr8 112978563 112978860 + 2 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 335218 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 411-165 chr20 54500976 54501234 + 2 NA intron (NM_018431, intron 1 of 7) L1ME4c|LINE|L1 25512 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 291-122 chr14 55960411 55960565 + 2 NA Intergenic L1MEf|LINE|L1 -157923 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 265-35 chr10 61500900 61501148 + 2 NA Intergenic Intergenic 20983 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 319-434 chr5 155888697 155888975 + 2 NA Intergenic Intergenic -437921 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 256-51 chr10 104200859 104201101 + 2 NA intron (NM_025145, intron 8 of 37) L2a|LINE|L2 17903 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 274-271 chr3 175814873 175815070 + 2 NA Intergenic Intergenic -38638 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 455-129 chr2 113848975 113849276 + 2 NA intron (NR_110174, intron 2 of 4) intron (NR_110174, intron 2 of 4) -40809 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 741-43 chr3 191655421 191655863 + 2 NA Intergenic L1MEg|LINE|L1 194479 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 246-296 chr4 63522611 63522820 + 2 NA Intergenic Intergenic 886735 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 263-73 chr11 107756056 107756223 + 2 NA Intergenic L1MEh|LINE|L1 -44083 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 376-122 chr15 69886312 69886549 + 2 NA Intergenic MIR|SINE|MIR 51196 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 267-219 chr2 197958724 197958934 + 2 NA intron (NM_006226, intron 1 of 5) MIR|SINE|MIR 154236 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 375-246 chr21 34008647 34008855 + 2 NA Intergenic LTR8|LTR|ERV1 32369 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 307-137 chr14 50036869 50037077 + 2 NA intron (NR_131171, intron 6 of 8) MLT1J|LTR|ERVL-MaLR -29453 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 332-415 chr5 55118595 55118887 + 2 NA intron (NM_152623, intron 11 of 11) intron (NM_152623, intron 11 of 11) 16095 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 345-394 chr4 112801035 112801308 + 2 NA intron (NM_001354269, intron 1 of 43) intron (NM_001354269, intron 1 of 43) -16826 NM_001354275 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 251-229 chr3 31493741 31493971 + 2 NA Intergenic Intergenic -39069 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 379-305 chr6 147037493 147037796 + 2 NA intron (NR_034115, intron 5 of 10) FAM|SINE|Alu -121281 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 208-230 chr6 43262349 43262516 + 2 NA intron (NM_032538, intron 12 of 14) intron (NM_032538, intron 12 of 14) 18951 NM_032538 84630 Hs.485436 NM_032538 ENSG00000146216 TTBK1 BDTK tau tubulin kinase 1 protein-coding 219-47 chr11 43963722 43963858 + 2 NA Intergenic L1M7|LINE|L1 21153 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 255-54 chr11 21388146 21388305 + 2 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 718639 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 273-481 chrX 69519706 69519893 + 2 NA intron (NM_015686, intron 1 of 2) L3|LINE|CR1 14564 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 357-257 chr22 36693563 36693883 + 2 NA intron (NM_006078, intron 1 of 3) L2c|LINE|L2 9135 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 286-90 chr12 53840290 53840485 + 2 NA Intergenic Intergenic -83353 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 230-213 chr21 22926281 22926448 + 2 NA Intergenic Intergenic -152920 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 296-274 chr21 18029470 18029726 + 2 NA intron (NM_001204178, intron 2 of 5) (TATC)n|Simple_repeat|Simple_repeat 112258 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 348-198 chr18 3906882 3907214 + 2 NA intron (NM_001242761, intron 3 of 11) MER2|DNA|TcMar-Tigger 21695 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 364-210 chr2 79313165 79313408 + 2 NA Intergenic Intergenic -153533 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 311-193 chr17 16232412 16232656 + 2 NA intron (NM_004278, intron 1 of 6) intron (NM_004278, intron 1 of 6) 15324 NM_004278 9487 Hs.499793 NM_004278 ENSG00000108474 PIGL CHIME phosphatidylinositol glycan anchor biosynthesis class L protein-coding 214-140 chr18 9837650 9837806 + 2 NA intron (NM_006868, intron 5 of 6) intron (NM_006868, intron 5 of 6) -48245 NM_001098529 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 328-617 chr9 124058797 124059025 + 2 NA Intergenic AluSx|SINE|Alu 47143 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 295-410 chr6 70973845 70974050 + 2 NA Intergenic Intergenic -16887 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 555-86 chr2 19117945 19118442 + 2 NA Intergenic Intergenic -91222 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 343-343 chr3 86732167 86732354 + 2 NA Intergenic Intergenic 250317 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 270-317 chr5 127994598 127994856 + 2 NA intron (NR_152803, intron 1 of 1) intron (NR_152803, intron 1 of 1) 88448 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 367-477 chr9 96505434 96505667 + 2 NA intron (NM_003671, intron 12 of 12) intron (NM_003671, intron 12 of 12) 55381 NM_014282 22927 Hs.494567 NM_014282 ENSG00000130956 HABP4 IHABP-4|IHABP4|Ki-1/57|SERBP1L hyaluronan binding protein 4 protein-coding 346-422 chr6 61319859 61320091 + 2 NA Intergenic ALR/Alpha|Satellite|centr -254155 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 316-510 chr7 33831358 33831568 + 2 NA Intergenic Intergenic -73452 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 273-375 chr5 173689577 173689718 + 2 NA intron (NR_146727, intron 1 of 2) intron (NR_146727, intron 1 of 2) 188 NR_146727 105377736 Hs.582570 NR_146727 ENSG00000253428 LINC01942 - long intergenic non-protein coding RNA 1942 ncRNA 339-586 chr8 116438458 116438763 + 2 NA Intergenic Plat_L3|LINE|CR1 -113551 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 510-37 chr11 5343871 5344274 + 2 NA intron (NM_001005567, intron 4 of 4) intron (NM_001005567, intron 4 of 4) -7436 NM_001004750 390058 Hs.553730 NM_001004750 ENSG00000176239 OR51B6 HOR5'Beta6 olfactory receptor family 51 subfamily B member 6 protein-coding 625-100 chr7 24492495 24493007 + 2 NA Intergenic L2c|LINE|L2 -80701 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 257-374 chr7 10812355 10812549 + 2 NA Intergenic Intergenic -32508 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 393-141 chr18 14072447 14072740 + 2 NA Intergenic Intergenic 59842 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 175-78 chr2 86517043 86517189 + 2 NA intron (NR_036454, intron 1 of 3) L1MD1|LINE|L1 46327 NM_016079 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 376-404 chr8 89059294 89059570 + 2 NA Intergenic Intergenic 698279 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 543-117 chr2 34665911 34666336 + 2 NA Intergenic Intergenic -11434 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 542-120 chr20 43053310 43053717 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 84770 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 500-15 chr1 208148923 208149262 + 2 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 95292 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 233-406 chrX 97299764 97299958 + 2 NA intron (NM_007309, intron 23 of 26) intron (NM_007309, intron 23 of 26) 264674 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 329-494 chr6 62678743 62679004 + 2 NA Intergenic Intergenic -392646 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 395-313 chr7 54215606 54215924 + 2 NA Intergenic L1M1|LINE|L1 -114932 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 337-225 chr18 64319227 64319454 + 2 NA intron (NR_033881, intron 5 of 9) L1MC1|LINE|L1 -59285 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 382-136 chr16 83073040 83073270 + 2 NA intron (NM_001220489, intron 3 of 12) MIR|SINE|MIR -82857 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 295-464 chr8 53573057 53573320 + 2 NA Intergenic Intergenic -49223 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 336-574 chr9 30061345 30061528 + 2 NA Intergenic Intergenic 347018 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 291-270 chr21 30837525 30837789 + 2 NA Intergenic Intergenic -7898 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 484-235 chr6 51272682 51273071 + 2 NA Intergenic Intergenic -348994 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 173-35 chr14 57555958 57556076 + 2 NA Intergenic Intergenic -62160 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 229-278 chr4 95114694 95114861 + 2 NA exon (NM_001203, exon 5 of 13) exon (NM_001203, exon 5 of 13) 23286 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 571-183 chr8 144953149 144953708 + 2 NA Intergenic L1PB1|LINE|L1 -2548 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 299-397 chr6 72600185 72600474 + 2 NA Intergenic L1MA2|LINE|L1 -21514 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 1041-5 chr19 52455402 52456103 + 2 NA intron (NM_001099694, intron 1 of 5) intron (NM_001099694, intron 1 of 5) 2199 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 160-45 chr2 144802987 144803109 + 2 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 135081 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 324-436 chr5 124972400 124972687 + 2 NA Intergenic MER61-int|LTR|ERV1 -64288 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 170-71 chr2 80934091 80934191 + 2 NA Intergenic L1MB5|LINE|L1 532805 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 578-36 chr11 22793551 22794002 + 2 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 35603 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 278-207 chr2 44420869 44421014 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 58994 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 349-314 chr22 34444344 34444584 + 2 NA Intergenic Intergenic -521576 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 376-388 chr7 97623348 97623680 + 2 NA Intergenic Intergenic -108572 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 177-36 chr12 24848452 24848573 + 2 NA intron (NM_001178091, intron 5 of 9) intron (NM_001178091, intron 5 of 9) 53710 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 339-383 chr3 147875118 147875448 + 2 NA Intergenic Intergenic -202876 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 533-110 chr2 156086100 156086506 + 2 NA intron (NR_110250, intron 1 of 3) MamRTE1|LINE|RTE-BovB 168628 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 160-126 chr8 130704466 130704565 + 2 NA Intergenic Intergenic -260841 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 506-290 chr8 117541593 117541973 + 2 NA Intergenic Intergenic 21070 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 360-107 chr13 89598144 89598386 + 2 NA Intergenic MLT2B1|LTR|ERVL -33852 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 431-314 chr9 24767743 24768131 + 2 NA Intergenic Intergenic -222040 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 289-322 chr3 166174246 166174499 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -336949 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 233-239 chr3 97134168 97134340 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -305353 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 352-330 chr3 139057304 139057570 + 2 NA Intergenic L1MC4|LINE|L1 -12545 NM_001134657 389152 Hs.531377 NM_001004315 ENSG00000233701 PRR23C - proline rich 23C protein-coding 479-194 chr5 54678053 54678385 + 2 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) 25105 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 374-210 chr2 201352576 201352843 + 2 NA intron (NM_001289993, intron 1 of 14) intron (NM_001289993, intron 1 of 14) 4636 NR_110620 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 390-107 chr14 72224623 72224853 + 2 NA intron (NM_001370288, intron 2 of 16) Charlie4z|DNA|hAT-Charlie 291211 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 600-19 chr11 41839225 41839644 + 2 NA Intergenic L1MA8|LINE|L1 124866 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 755-72 chr8 134944285 134944730 + 2 NA Intergenic MIR|SINE|MIR 94572 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 258-57 chr10 89051415 89051646 + 2 NA Intergenic L1MC3|LINE|L1 -11806 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 310-84 chr11 82551580 82551878 + 2 NA Intergenic Intergenic -147816 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 274-121 chr14 45977730 45977930 + 2 NA Intergenic HERVL-int|LTR|ERVL -86329 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 347-149 chr15 57416329 57416649 + 2 NA intron (NM_032866, intron 1 of 18) intron (NM_032866, intron 1 of 18) 39984 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 302-9 chr1 82873299 82873478 + 2 NA Intergenic Intergenic -29795 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 325 chr1 4603673 4603942 + 2 NA Intergenic MER54B|LTR|ERVL 32320 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 201-221 chr6 123208876 123209036 + 2 NA Intergenic Intergenic 212721 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 473-227 chr5 127250053 127250417 + 2 NA Intergenic L1ME4a|LINE|L1 -40529 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 348-405 chr5 45410977 45411287 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 285248 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 300-6 chr1 61905682 61905858 + 2 NA intron (NM_001350145, intron 24 of 43) MER21C|LTR|ERVL 59695 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 352-297 chr21 30746517 30746721 + 2 NA TTS (NM_181617) TTS (NM_181617) 640 NM_181617 337978 Hs.553699 NM_181617 ENSG00000187026 KRTAP21-2 KAP21.2 keratin associated protein 21-2 protein-coding 508-130 chr20 16668347 16668797 + 2 NA Intergenic Intergenic -61454 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 194-71 chr16 60116775 60116905 + 2 NA Intergenic L1MEf|LINE|L1 242953 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 375-320 chr5 36255413 36255619 + 2 NA exon (NM_001161429, exon 12 of 15) exon (NM_001161429, exon 12 of 15) -13237 NM_153013 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 269-230 chr21 24651933 24652108 + 2 NA Intergenic Intergenic -188530 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 357-432 chr8 52240441 52240648 + 2 NA intron (NM_001352881, intron 2 of 2) intron (NM_001352881, intron 2 of 2) 8100 NR_148196 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 160-66 chr3 74563516 74563625 + 2 NA Intergenic Intergenic -42430 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 315-400 chr5 155801105 155801363 + 2 NA Intergenic L1MEj|LINE|L1 -525523 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 480-166 chr2 215206568 215206950 + 2 NA Intergenic AluSq|SINE|Alu -68133 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 236-242 chr3 161455407 161455583 + 2 NA Intergenic L1MEc|LINE|L1 29068 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 282-159 chr17 14892677 14892854 + 2 NA Intergenic L1MC5|LINE|L1 -122040 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 563-71 chr17 72974644 72975146 + 2 NA intron (NM_001352692, intron 4 of 9) Tigger3b|DNA|TcMar-Tigger 117793 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 121-44 chr3 144178422 144178509 + 2 NA Intergenic L1M6|LINE|L1 205384 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 442-5 chr1 49776030 49776316 + 2 NA intron (NM_001323575, intron 2 of 12) L2c|LINE|L2 247781 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 353-410 chr5 68806448 68806649 + 2 NA Intergenic L1MEd|LINE|L1 223379 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 260-180 chr18 6832939 6833120 + 2 NA intron (NM_001366230, intron 2 of 17) L1MC4|LINE|L1 -1456 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 328-472 chr5 125035641 125035815 + 2 NA Intergenic Intergenic -1103 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 314-610 chr9 82447766 82447943 + 2 NA Intergenic MIRb|SINE|MIR 459082 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 567-194 chr8 118836580 118837011 + 2 NA Intergenic MIRb|SINE|MIR 115090 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 238-142 chr17 73104119 73104304 + 2 NA Intergenic Arthur1C|DNA|hAT-Tip100 -11523 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 402-179 chr2 200331494 200331808 + 2 NA intron (NM_001282743, intron 2 of 11) MIR|SINE|MIR 22701 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 366-258 chr21 34214389 34214746 + 2 NA Intergenic AluSz6|SINE|Alu 33890 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 513-117 chr19 37633316 37633772 + 2 NA 3' UTR (NM_001320671, exon 6 of 6) 3' UTR (NM_001320671, exon 6 of 6) 21921 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 612-140 chr8 64512375 64512863 + 2 NA Intergenic L1M4a2|LINE|L1 64644 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 336-80 chr10 120040381 120040667 + 2 NA Intergenic MER21B|LTR|ERVL 82011 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 346-234 chr2 40215156 40215448 + 2 NA intron (NM_001351483, intron 2 of 8) AluJr|SINE|Alu 215002 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 211-22 chr1 246180187 246180307 + 2 NA intron (NM_022743, intron 5 of 11) (TA)n|Simple_repeat|Simple_repeat 237165 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 221-200 chr3 118037424 118037567 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -346570 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 271-141 chr14 84828785 84828956 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -443062 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 435-99 chr17 9416883 9417162 + 2 NA intron (NM_004853, intron 6 of 7) LTR8B|LTR|ERV1 158798 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 223-280 chr5 84453893 84454103 + 2 NA Intergenic L1MA7|LINE|L1 -69118 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 442-176 chr22 44474901 44475328 + 2 NA Intergenic L1MEg|LINE|L1 23119 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 468-330 chr8 136479044 136479388 + 2 NA Intergenic Intergenic -51582 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 169-77 chr3 89937112 89937227 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 829548 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 604-45 chr14 50483249 50483748 + 2 NA intron (NM_198794, intron 5 of 31) intron (NM_198794, intron 5 of 31) 49071 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 222-377 chr8 126268197 126268369 + 2 NA Intergenic LTR41C|LTR|ERVL -57212 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 456-122 chr16 58998151 58998569 + 2 NA Intergenic Intergenic -264044 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 450-295 chr8 59415632 59416025 + 2 NA Intergenic L1ME1|LINE|L1 296618 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 228-338 chr8 83667712 83667868 + 2 NA Intergenic Intergenic 264032 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 287-327 chr5 121283743 121283966 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -38696 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 647-33 chr15 93355191 93355662 + 2 NA Intergenic Intergenic 149360 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 206-128 chr2 166753904 166754075 + 2 NA Intergenic Intergenic -134498 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 355-251 chr2 123265456 123265700 + 2 NA Intergenic L1MA3|LINE|L1 -192097 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 351-110 chr13 76423699 76424024 + 2 NA Intergenic L1ME1|LINE|L1 462544 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 406-95 chr15 37286555 37286871 + 2 NA Intergenic Intergenic -185402 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 229-98 chr12 125790360 125790566 + 2 NA Intergenic Intergenic 168011 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 272-449 chr8 89367328 89367518 + 2 NA Intergenic Intergenic 390288 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 278-20 chr1 219056031 219056306 + 2 NA intron (NR_031644, intron 6 of 6) (TTTG)n|Simple_repeat|Simple_repeat 117620 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 165-93 chr4 106862657 106862771 + 2 NA Intergenic Kanga11a|DNA|TcMar-Tc2 173599 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 222-235 chr3 70045113 70045270 + 2 NA Intergenic Intergenic 45447 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 314-419 chr4 46622877 46623097 + 2 NA Intergenic L1M1|LINE|L1 -232859 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 470-135 chr2 133851902 133852282 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -267843 NM_001371457 235-42 chr10 65747847 65748017 + 2 NA intron (NR_120647, intron 5 of 5) intron (NR_120647, intron 5 of 5) 176507 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 528-259 chr9 18535448 18535956 + 2 NA intron (NM_052866, intron 3 of 12) THE1C|LTR|ERVL-MaLR -37604 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 295-234 chr2 167943750 167943908 + 2 NA Intergenic Intergenic -2685 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 248-437 chrX 17351596 17351757 + 2 NA Intergenic L1MEg|LINE|L1 -23524 NM_198270 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 354-176 chr17 74486493 74486744 + 2 NA Intergenic L1ME4b|LINE|L1 19984 NM_007261 11314 Hs.9688 NM_007261 ENSG00000167851 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 629-30 chr11 111649265 111649870 + 2 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 47118 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 377-299 chr4 171233591 171233936 + 2 NA Intergenic Intergenic 47579 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 544-21 chr1 227713565 227713963 + 2 NA Intergenic L1PA10|LINE|L1 -14404 NM_001323933 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 319-480 chr6 157503866 157504133 + 2 NA intron (NM_024630, intron 1 of 8) L1ME3D|LINE|L1 -25133 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 367-299 chr3 131399723 131399982 + 2 NA Intergenic LTR16|LTR|ERVL 18078 NM_152395 131870 Hs.282050 NM_152395 ENSG00000198585 NUDT16 - nudix hydrolase 16 protein-coding 194-59 chr14 66315261 66315389 + 2 NA Intergenic L1MA5|LINE|L1 -171046 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 282-39 chr10 33204165 33204432 + 2 NA intron (NM_001244973, intron 10 of 16) intron (NM_001244973, intron 10 of 16) -87491 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 362-441 chr8 101399523 101399777 + 2 NA Intergenic LTR16|LTR|ERVL 30757 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 511-35 chr11 14191182 14191608 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 167090 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 681-21 chr15 83680265 83680774 + 2 NA intron (NM_207517, intron 2 of 29) L1M4|LINE|L1 26396 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 424-287 chr9 27063156 27063476 + 2 NA 3' UTR (NM_001349928, exon 20 of 20) 3' UTR (NM_001349928, exon 20 of 20) -45825 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 593-25 chr11 82875056 82875414 + 2 NA intron (NM_005040, intron 1 of 8) intron (NM_005040, intron 1 of 8) 25195 NM_005040 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 305-347 chr3 83682433 83682692 + 2 NA Intergenic Intergenic 1187013 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 337-22 chr1 147235660 147235921 + 2 NA intron (NM_001348451, intron 2 of 23) intron (NM_001348451, intron 2 of 23) -6894 NR_145689 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 350-457 chr6 159527228 159527439 + 2 NA Intergenic Intergenic 143802 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 298-483 chr8 135921879 135922110 + 2 NA Intergenic LTR79|LTR|ERVL 464538 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 236-308 chr6 98305158 98305346 + 2 NA Intergenic Intergenic 280721 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 322-274 chr2 150947798 150948090 + 2 NA Intergenic HAL1|LINE|L1 313919 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 323-20 chr1 105560939 105561146 + 2 NA Intergenic Intergenic 57893 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 368-423 chr7 56217954 56218288 + 2 NA Intergenic AluSq2|SINE|Alu -101704 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 257-208 chr2 133368531 133368694 + 2 NA intron (NM_207481, intron 3 of 17) MIRc|SINE|MIR 102417 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 913-6 chr11 50487707 50488410 + 2 NA Intergenic MER11C|LTR|ERVK 78911 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 305-64 chr10 60842957 60843255 + 2 NA Intergenic Intergenic 64628 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 291-445 chr8 77405935 77406189 + 2 NA Intergenic Intergenic -44635 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 219-207 chr20 40409919 40410098 + 2 NA Intergenic Intergenic 279228 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 355-384 chr4 185893893 185894183 + 2 NA intron (NM_021069, intron 1 of 20) LTR49|LTR|ERV1 62334 NM_001270771 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 190-75 chr18 4934819 4934953 + 2 NA Intergenic L1MEc|LINE|L1 -146296 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 478-148 chr2 136324630 136324996 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -206658 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 267-323 chr5 26649369 26649612 + 2 NA Intergenic Intergenic 389096 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 293-8 chr1 90794660 90794827 + 2 NA intron (NR_135038, intron 1 of 2) intron (NR_135038, intron 1 of 2) 41418 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 137-89 chr8 29668011 29668105 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie 80051 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 204-293 chr8 122681002 122681114 + 2 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 13048 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 354-18 chr1 117984746 117984978 + 2 NA intron (NM_206996, intron 40 of 48) intron (NM_206996, intron 40 of 48) 55123 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 180-140 chr5 109565460 109565562 + 2 NA Intergenic L1MA5A|LINE|L1 -123855 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 391-345 chr8 65231953 65232162 + 2 NA Intergenic Intergenic -51717 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 383-49 chr11 30974784 30975124 + 2 NA intron (NM_001367979, intron 20 of 38) L1MA4A|LINE|L1 17732 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 431-319 chr9 72638980 72639362 + 2 NA intron (NM_138691, intron 4 of 23) U2|snRNA|snRNA 117370 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 232-209 chr2 233721100 233721265 + 2 NA intron (NM_007120, intron 1 of 4) intron (NM_007120, intron 1 of 4) 2446 NM_007120 54657 Hs.554822 NM_007120 ENSG00000244474 UGT1A4 GNT1|HUG-BR2|UDPGT|UDPGT 1-4|UGT-1A|UGT-1D|UGT1|UGT1-01|UGT1-04|UGT1.1|UGT1.4|UGT1A|UGT1A1|UGT1A4S|UGT1D|hUG-BR1 UDP glucuronosyltransferase family 1 member A4 protein-coding 365-271 chr3 186868931 186869214 + 2 NA Intergenic AluJo|SINE|Alu -7704 NR_046662 100874095 Hs.638968 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 344-171 chr16 23823759 23824000 + 2 NA Intergenic Intergenic -12104 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 497-52 chr12 10094580 10095065 + 2 NA intron (NM_001297750, intron 1 of 6) intron (NM_001297750, intron 1 of 6) 4163 NM_001297749 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 203-186 chr5 114473181 114473335 + 2 NA intron (NM_021614, intron 5 of 7) intron (NM_021614, intron 5 of 7) 39747 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 370-160 chr15 61179574 61179853 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 49589 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 260-403 chr7 32023504 32023702 + 2 NA intron (NM_001322059, intron 3 of 17) L1MD2|LINE|L1 46804 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 162-100 chr4 129045713 129045845 + 2 NA intron (NM_001300898, intron 2 of 5) intron (NM_001300898, intron 2 of 5) 47760 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 516-215 chr5 154727082 154727483 + 2 NA intron (NM_001367717, intron 1 of 18) L1MEg|LINE|L1 14439 NM_001367717 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 271-441 chr8 89114791 89115044 + 2 NA Intergenic L1PA11|LINE|L1 642794 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 318-529 chr8 11295005 11295286 + 2 NA intron (NM_015458, intron 1 of 9).2 intron (NM_015458, intron 1 of 9).2 10329 NM_015458 66036 Hs.591395 NM_015458 ENSG00000104643 MTMR9 C8orf9|LIP-STYX|MTMR8 myotubularin related protein 9 protein-coding 130-58 chr3 107152983 107153068 + 2 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 87613 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 307-358 chr4 135647494 135647682 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 240505 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 262-239 chr2 224654792 224654993 + 2 NA Intergenic MER131|DNA?|DNA? -69495 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 306-11 chr1 74722835 74723090 + 2 NA intron (NM_001130042, intron 4 of 9) intron (NM_001130042, intron 4 of 9) 10088 NM_001889 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 306-100 chr12 24213790 24214077 + 2 NA intron (NM_001261414, intron 4 of 16) intron (NM_001261414, intron 4 of 16) 1512 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 228-185 chr2 195128095 195128297 + 2 NA Intergenic Intergenic 397601 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 508-180 chr5 4362425 4362794 + 2 NA Intergenic Intergenic -410872 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 547-114 chr2 172697924 172698305 + 2 NA Intergenic Intergenic -37731 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 350-196 chr18 72818381 72818677 + 2 NA intron (NM_001354018, intron 4 of 11) intron (NM_001354018, intron 4 of 11) 34853 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 170-101 chr4 10896803 10896916 + 2 NA Intergenic L1ME4a|LINE|L1 -212091 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 419-217 chr4 183744808 183745035 + 2 NA Intergenic AluSx|SINE|Alu -53101 NR_132761 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 487-20 chr1 159775190 159775674 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -5530 NM_001319658 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|LDP3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 200-45 chr11 26781074 26781232 + 2 NA Intergenic Intergenic -59093 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 228-247 chr4 66658372 66658569 + 2 NA Intergenic Intergenic 381646 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 337-49 chr10 53722112 53722403 + 2 NA Intergenic Intergenic -763973 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 335-412 chr5 15592913 15593240 + 2 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 21926 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 319-218 chr19 36909860 36910068 + 2 NA intron (NM_001037232, intron 3 of 5) HAL1|LINE|L1 6075 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 306-456 chr7 15874948 15875196 + 2 NA Intergenic Intergenic 186694 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 312-476 chr7 27379817 27380032 + 2 NA Intergenic Intergenic -132695 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 259-144 chr16 10059141 10059368 + 2 NA intron (NM_001134408, intron 2 of 13) L2a|LINE|L2 122813 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 209-299 chr7 71546547 71546714 + 2 NA intron (NM_022479, intron 5 of 10) MIRb|SINE|MIR -238860 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 385-229 chr22 28556793 28557018 + 2 NA intron (NM_001145418, intron 2 of 22) MLT1F|LTR|ERVL-MaLR 97036 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 419-230 chr5 45871442 45871797 + 2 NA Intergenic L1PA4|LINE|L1 -175239 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 345-540 chr8 132714308 132714584 + 2 NA intron (NM_144649, intron 7 of 9) L1MC3|LINE|L1 -38901 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 308-5 chr1 22705402 22705676 + 2 NA Intergenic MER33|DNA|hAT-Charlie -5299 NM_004442 2048 Hs.380705 NM_004442 ENSG00000133216 EPHB2 CAPB|DRT|EK5|EPHT3|ERK|Hek5|PCBC|Tyro5 EPH receptor B2 protein-coding 358-533 chrX 154701392 154701686 + 2 NA intron (NR_104114, intron 3 of 8) L1MA9|LINE|L1 -47960 NM_172377 30848 Hs.87225 NM_020994 ENSG00000126890 CTAG2 CAMEL|CT2|CT6.2|CT6.2a|CT6.2b|ESO2|LAGE-1|LAGE2B cancer/testis antigen 2 protein-coding 261-373 chr8 65195054 65195309 + 2 NA Intergenic L1PA10|LINE|L1 -14841 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 319-477 chr6 142456640 142456822 + 2 NA Intergenic Intergenic 154724 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 520-78 chr14 25754352 25754709 + 2 NA Intergenic L2a|LINE|L2 -704233 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 574-161 chr7 23616414 23616880 + 2 NA intron (NM_138771, intron 3 of 3) HAL1|LINE|L1 19265 NM_138771 90693 Hs.232296 NM_138771 ENSG00000169193 CCDC126 - coiled-coil domain containing 126 protein-coding 133-13 chr11 91149530 91149637 + 2 NA Intergenic Intergenic -280381 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 402-256 chr5 9653986 9654230 + 2 NA intron (NR_027112, intron 11 of 12) intron (NR_027112, intron 11 of 12) -23757 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 522-206 chr5 42117553 42118060 + 2 NA Intergenic LTR12_|LTR|ERV1 57539 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 274-401 chr8 125398128 125398321 + 2 NA Intergenic Intergenic -32134 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 218-238 chr4 47151445 47151608 + 2 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 119959 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 459-188 chr3 84606956 84607396 + 2 NA Intergenic LTR87|LTR|ERVL? 262399 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 447-260 chr8 61336369 61336641 + 2 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 48535 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 589-73 chr2 126877356 126877838 + 2 NA Intergenic Intergenic -21293 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 300-467 chr8 83584590 83584840 + 2 NA Intergenic Intergenic 180957 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 471-90 chr14 86961650 86961985 + 2 NA Intergenic L1MA3|LINE|L1 56039 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 121-47 chr4 88604622 88604686 + 2 NA intron (NM_001271602, intron 2 of 24) L1MB8|LINE|L1 12174 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 285-187 chr2 12597763 12597963 + 2 NA Intergenic Intergenic -119009 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 339-337 chr22 27479866 27480117 + 2 NA Intergenic L1MB7|LINE|L1 169340 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 589-56 chr19 37144307 37144738 + 2 NA Intergenic Intergenic 27914 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 378-269 chr22 49864391 49864651 + 2 NA intron (NM_014838, intron 1 of 1) Tigger5b|DNA|TcMar-Tigger 10677 NM_014838 9889 Hs.475208 NM_014838 ENSG00000100426 ZBED4 - zinc finger BED-type containing 4 protein-coding 287-231 chr21 23526776 23526980 + 2 NA Intergenic Intergenic -142043 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 365-413 chr8 132098603 132098883 + 2 NA intron (NM_001145095, intron 4 of 15) AluJb|SINE|Alu 6522 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 205-187 chr3 102283487 102283617 + 2 NA Intergenic L1M1|LINE|L1 119847 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 276-426 chr7 34537053 34537303 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -121040 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 261-171 chr2 12402742 12402882 + 2 NA intron (NR_110196, intron 4 of 5) THE1C-int|LTR|ERVL-MaLR 203682 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 534-274 chr9 35185844 35186192 + 2 NA intron (NM_006377, intron 1 of 38) MER4D|LTR|ERV1 24009 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 329-354 chr3 28168826 28169028 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -72692 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 271-369 chr6 19656259 19656488 + 2 NA Intergenic Intergenic 148386 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 307-485 chr8 95384994 95385175 + 2 NA intron (NR_038209, intron 2 of 3) intron (NR_038209, intron 2 of 3) -115883 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 328-155 chr14 68532087 68532332 + 2 NA intron (NM_001321818, intron 10 of 10) L1MEi|LINE|L1 96578 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 340-68 chr11 7592889 7593129 + 2 NA intron (NM_001351860, intron 1 of 21) intron (NM_001351860, intron 1 of 21) -4177 NM_001256568 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 353-221 chr19 16034566 16034745 + 2 NA non-coding (NR_024335, exon 2 of 5) non-coding (NR_024335, exon 2 of 5) 535 NR_110321 148231 Hs.631621 NR_024335 ENSG00000167459 LINC00905 - long intergenic non-protein coding RNA 905 ncRNA 500-157 chr2 167681313 167681690 + 2 NA Intergenic Intergenic -137171 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 614-33 chr14 78333165 78333612 + 2 NA intron (NR_073547, intron 4 of 20) L2a|LINE|L2 -70331 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 132-75 chr6 145987750 145987873 + 2 NA Intergenic Intergenic -23453 NM_001370327 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 378-86 chr11 78239042 78239250 + 2 NA intron (NM_012296, intron 3 of 9) L1M2a|LINE|L1 50227 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 285-402 chr8 43672365 43672581 + 2 NA Intergenic ALR/Alpha|Satellite|centr 380031 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 367-196 chr2 50239753 50240049 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 107853 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 369-382 chr7 26883470 26883777 + 2 NA Intergenic L1M1|LINE|L1 -19033 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 114-13 chr13 32843958 32844018 + 2 NA intron (NR_047020, intron 4 of 4) intron (NR_047020, intron 4 of 4) 67664 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 662-60 chr3 79400534 79400988 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -10966 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 115-19 chr2 101530760 101530836 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -55686 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 187-58 chr15 86017183 86017302 + 2 NA Intergenic Intergenic -62378 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 387-323 chr6 163141338 163141627 + 2 NA intron (NM_001080379, intron 4 of 4) L1MEi|LINE|L1 50520 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 640-60 chr2 57277215 57277678 + 2 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -630205 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 523-287 chr9 108425506 108425963 + 2 NA Intergenic Intergenic 430252 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 469-177 chr3 79334330 79334681 + 2 NA intron (NM_002941, intron 2 of 30) L2a|LINE|L2 -77222 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 335-67 chr10 89019940 89020208 + 2 NA Intergenic MER61F|LTR|ERV1 -27099 NR_028371 100302740 Hs.244139 NR_028371 FAS-AS1 FAS-AS|FASAS|SAF FAS antisense RNA 1 ncRNA 339-270 chr2 106006200 106006507 + 2 NA Intergenic MER31B|LTR|ERV1 -59335 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 538-230 chr8 79119516 79119925 + 2 NA Intergenic Intergenic -212468 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 354-92 chr11 114371682 114371870 + 2 NA intron (NR_120567, intron 2 of 2) intron (NR_120567, intron 2 of 2) 8263 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 253-351 chr6 40262606 40262794 + 2 NA Intergenic Intergenic 93306 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 300-59 chr11 5796149 5796330 + 2 NA Intergenic Intergenic -7423 NM_001001913 79473 Hs.690209 NM_001001913 ENSG00000181001 OR52N1 OR11-61 olfactory receptor family 52 subfamily N member 1 protein-coding 419-132 chr2 23094728 23095052 + 2 NA Intergenic Intergenic -290289 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 202-119 chr2 78141551 78141721 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 52906 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 246-148 chr17 31651829 31652024 + 2 NA Intergenic L1ME3Cz|LINE|L1 76515 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 653-21 chr11 25528917 25529435 + 2 NA Intergenic Intergenic -659947 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 814-11 chr11 57620327 57620905 + 2 NA Intergenic Intergenic -20582 NR_029673 406919 NR_029673 ENSG00000208009 MIR130A MIRN130A|miRNA130A|mir-130a microRNA 130a ncRNA 283-289 chr3 39302860 39303092 + 2 NA Intergenic AluJr|SINE|Alu -21241 NM_001171174 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 288-191 chr2 65457966 65458169 + 2 NA Intergenic L2c|LINE|L2 -25468 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 610-162 chr7 49979279 49979803 + 2 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 113705 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 284-126 chr14 88455520 88455753 + 2 NA Intergenic Intergenic 69979 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 305-196 chr17 47322955 47323182 + 2 NA promoter-TSS (NM_152347) promoter-TSS (NM_152347) 545 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 309-268 chr2 136786164 136786430 + 2 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 20752 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 229-185 chr2 78127401 78127537 + 2 NA intron (NR_110287, intron 5 of 5) intron (NR_110287, intron 5 of 5) 38739 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 393-392 chrX 58409721 58409937 + 2 NA Intergenic ALR/Alpha|Satellite|centr -499196 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 123-25 chr2 16812987 16813062 + 2 NA Intergenic L1ME2|LINE|L1 -147190 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 470-138 chr2 146764487 146764815 + 2 NA Intergenic L1MEc|LINE|L1 177594 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 196-23 chr10 4391072 4391189 + 2 NA intron (NR_108055, intron 1 of 1) intron (NR_108055, intron 1 of 1) 6884 NR_108054 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 432-142 chr2 161930327 161930706 + 2 NA intron (NM_001354443, intron 15 of 25) (TAAT)n|Simple_repeat|Simple_repeat 143699 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 468-141 chr2 51417697 51418114 + 2 NA intron (NR_135237, intron 4 of 10) L1MEg|LINE|L1 385304 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 373-271 chr3 191154075 191154270 + 2 NA Intergenic L1M3c|LINE|L1 -45069 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 276-272 chr21 29952560 29952776 + 2 NA Intergenic Intergenic -12616 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 426-69 chr13 84890075 84890388 + 2 NA Intergenic Intergenic 106577 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 253-373 chr7 4298595 4298753 + 2 NA Intergenic AluSc|SINE|Alu -163837 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 222-205 chr20 11432229 11432426 + 2 NA Intergenic Intergenic -158944 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 624-72 chr2 191379790 191380290 + 2 NA intron (NM_012223, intron 13 of 28) intron (NM_012223, intron 13 of 28) 134636 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 247-418 chr8 120783020 120783168 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 21841 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 263-413 chr8 51312348 51312607 + 2 NA Intergenic Intergenic 496968 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 284-264 chr3 88292402 88292585 + 2 NA Intergenic Intergenic -45963 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 405-196 chr22 46424763 46425162 + 2 NA intron (NM_014246, intron 5 of 34) AluSz|SINE|Alu 89248 NM_001282782 55687 Hs.439524 NM_018006 ENSG00000100416 TRMU LCAL3|MTO2|MTU1|TRMT|TRMT1 tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase protein-coding 161-92 chr5 156676133 156676252 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -174103 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 302-77 chr11 71170249 71170512 + 2 NA intron (NM_012309, intron 1 of 24) Zaphod|DNA|hAT-Tip100 54416 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 290-246 chr20 40977475 40977715 + 2 NA Intergenic L1MA3|LINE|L1 -3118 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 209-282 chr6 142467154 142467322 + 2 NA Intergenic Intergenic 165231 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 351-48 chr10 75723579 75723833 + 2 NA intron (NR_132791, intron 1 of 2) intron (NR_132791, intron 1 of 2) 11251 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 312-174 chr16 20520491 20520667 + 2 NA Intergenic MER20|DNA|hAT-Charlie 55788 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 319-76 chr10 103219931 103220144 + 2 NA Intergenic MER4D1|LTR|ERV1 -25850 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 444-68 chr14 62840960 62841322 + 2 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 204317 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 566-168 chr6 128623444 128623852 + 2 NA Intergenic L1PB|LINE|L1 -103049 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 264-392 chr7 94833495 94833710 + 2 NA Intergenic L1M4c|LINE|L1 -73992 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 386-58 chr11 82197779 82198108 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 205970 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 357-489 chrX 41861653 41861907 + 2 NA intron (NM_003688, intron 1 of 26) (TA)n|Simple_repeat|Simple_repeat 61254 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 210-48 chr11 88708963 88709113 + 2 NA intron (NM_001143831, intron 2 of 8) Kanga1a|DNA|TcMar-Tc2 204462 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 277-382 chr7 69194047 69194273 + 2 NA Intergenic L1MB5|LINE|L1 403464 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 294-100 chr13 84379868 84380117 + 2 NA intron (NR_046871, intron 3 of 6) L1MB3|LINE|L1 239390 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 323-452 chr6 25366142 25366425 + 2 NA intron (NM_001173977, intron 2 of 36) AluJr4|SINE|Alu 86909 NM_001173977 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 231-273 chr5 15050158 15050368 + 2 NA Intergenic Intergenic -178485 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 284-424 chr8 136659404 136659563 + 2 NA intron (NR_147196, intron 2 of 5) L1MD1|LINE|L1 128685 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 435-263 chr9 71475680 71476045 + 2 NA Intergenic Intergenic -28891 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 328-191 chr16 8431975 8432149 + 2 NA Intergenic MER49|LTR|ERV1 157776 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 167-7 chr1 67228387 67228536 + 2 NA intron (NM_144701, intron 7 of 10) AluJb|SINE|Alu 62007 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 381-404 chr9 26039542 26039743 + 2 NA Intergenic L1MB7|LINE|L1 -27033 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 259-370 chr7 52857467 52857667 + 2 NA Intergenic Intergenic -178066 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 560-189 chr8 131717587 131717943 + 2 NA Intergenic L1PA11|LINE|L1 -186328 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 222-338 chr7 42758369 42758539 + 2 NA Intergenic L1ME3D|LINE|L1 -52007 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 280-40 chr1 247149822 247150025 + 2 NA intron (NM_001297567, intron 3 of 3) MLT1A1|LTR|ERVL-MaLR 22094 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 576-24 chr11 78946127 78946554 + 2 NA intron (NM_001098816, intron 6 of 33) Tigger1|DNA|TcMar-Tigger -371476 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 432-20 chr1 214794805 214795117 + 2 NA Intergenic L1PA17|LINE|L1 191766 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 216-22 chr1 170992742 170992899 + 2 NA intron (NM_001163629, intron 12 of 21) L2a|LINE|L2 57286 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 257-278 chr3 135336185 135336343 + 2 NA Intergenic HAL1ME|LINE|L1 541004 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 172-89 chr4 39087977 39088103 + 2 NA intron (NM_199039, intron 4 of 9) intron (NM_199039, intron 4 of 9) 25808 NM_015990 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 183-103 chr4 64346406 64346568 + 2 NA intron (NM_001363796, intron 2 of 11) THE1D-int|LTR|ERVL-MaLR 62963 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 507-103 chr18 6666372 6666854 + 2 NA Intergenic Intergenic -63103 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 211-318 chr8 145045526 145045661 + 2 NA Intergenic L1MCa|LINE|L1 -6874 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 232-256 chr3 181852729 181852890 + 2 NA Intergenic AluSq2|SINE|Alu -99555 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 226-141 chr18 79840205 79840388 + 2 NA Intergenic L1ME3G|LINE|L1 -23372 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 255-289 chr4 31777587 31777802 + 2 NA Intergenic Intergenic -219685 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 183-91 chr3 28449199 28449345 + 2 NA intron (NM_001324170, intron 3 of 6) L1MB3|LINE|L1 100123 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 287-298 chr4 176361399 176361672 + 2 NA Intergenic L1ME4c|LINE|L1 41569 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 214-58 chr11 10214043 10214216 + 2 NA intron (NM_030962, intron 1 of 39) MER20|DNA|hAT-Charlie 80078 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 564-91 chr2 22951106 22951594 + 2 NA Intergenic Intergenic 414871 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 195-28 chr10 75437087 75437251 + 2 NA intron (NM_001305581, intron 1 of 6) intron (NM_001305581, intron 1 of 6) 5545 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 489-169 chr3 2604317 2604686 + 2 NA intron (NM_175607, intron 4 of 24) L2a|LINE|L2 -287714 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 395-167 chr2 57221588 57221875 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -685920 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 338-605 chrX 75759729 75760020 + 2 NA Intergenic L1PA13|LINE|L1 -16795 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 392-242 chr5 5759423 5759727 + 2 NA Intergenic Intergenic 336898 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 210-40 chr11 23354047 23354169 + 2 NA Intergenic AluJb|SINE|Alu 65082 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 297-240 chr2 175794072 175794272 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 208095 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 163-21 chr10 105418687 105418804 + 2 NA Intergenic L2b|LINE|L2 401588 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 309-437 chr5 58513364 58513540 + 2 NA Intergenic MER11A|LTR|ERVK 16657 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 251-260 chr4 16327422 16327605 + 2 NA Intergenic HAL1|LINE|L1 100850 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 417-99 chr16 12022158 12022527 + 2 NA intron (NM_032167, intron 3 of 20) AluSq|SINE|Alu 45608 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 547-66 chr14 43009558 43009963 + 2 NA Intergenic Intergenic 1402904 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 326-205 chr18 6450017 6450221 + 2 NA Intergenic Intergenic -34860 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 180-29 chr11 96820316 96820447 + 2 NA Intergenic Intergenic 311956 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 343-357 chr3 122323806 122324120 + 2 NA Intergenic L1ME4b|LINE|L1 -1285 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 229-65 chr11 63793082 63793254 + 2 NA Intergenic Intergenic -20288 NM_138471 144097 Hs.502793 NM_138471 ENSG00000168005 SPINDOC C11orf84|SPIN-DOC spindlin interactor and repressor of chromatin binding protein-coding 464-73 chr15 27863117 27863500 + 2 NA intron (NM_001300984, intron 20 of 22) intron (NM_001300984, intron 20 of 22) 236007 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 349-450 chr6 72563343 72563596 + 2 NA Intergenic Intergenic -58374 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 261-284 chr4 72448675 72448824 + 2 NA intron (NM_014243, intron 3 of 21) Arthur1|DNA|hAT-Tip100 120472 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 327-319 chr3 21102311 21102560 + 2 NA Intergenic L1PA15|LINE|L1 -303291 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 502-171 chr3 5777023 5777520 + 2 NA Intergenic L1MEg|LINE|L1 -527016 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 361-354 chr5 32402907 32403206 + 2 NA intron (NM_016107, intron 8 of 19) L2c|LINE|L2 -8581 NR_030305 693164 NR_030305 ENSG00000207956 MIR579 MIRN579|hsa-mir-579 microRNA 579 ncRNA 337-529 chr7 141939594 141939824 + 2 NA intron (NM_001301167, intron 3 of 5) L1MA3|LINE|L1 7265 NM_013252 23601 Hs.446235 NM_013252 ENSG00000258227 CLEC5A CLECSF5|MDL-1|MDL1 C-type lectin domain containing 5A protein-coding 239-32 chr10 42307104 42307310 + 2 NA Intergenic Intergenic 60838 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 567-193 chr8 112216693 112217132 + 2 NA Intergenic Intergenic -426581 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 278-62 chr11 125855013 125855182 + 2 NA Intergenic L1M1|LINE|L1 21781 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 387-83 chr12 59440799 59441108 + 2 NA Intergenic L1MA3|LINE|L1 -155076 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 416-83 chr12 5233880 5234278 + 2 NA TTS (NR_120476) TTS (NR_120476) 9072 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 610-116 chr3 88441168 88441767 + 2 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 103011 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 418-297 chr8 134305566 134305842 + 2 NA Intergenic Intergenic -292367 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 696-45 chr16 22989177 22989731 + 2 NA Intergenic Intergenic 159816 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 188-190 chr7 22763522 22763675 + 2 NA Intergenic Intergenic -35978 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 472-320 chr8 103780023 103780356 + 2 NA intron (NM_001348497, intron 3 of 22) L1M3f|LINE|L1 -39031 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 192-5 chr1 63692514 63692678 + 2 NA Intergenic Intergenic 69380 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 238-314 chr6 6144008 6144195 + 2 NA TTS (NM_000129) TTS (NM_000129) -25233 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 528-244 chr8 25534888 25535368 + 2 NA Intergenic AluJo|SINE|Alu 75895 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 293-369 chr6 62001994 62002188 + 2 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 284134 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 491-73 chr15 27400819 27401162 + 2 NA intron (NM_001270873, intron 5 of 5) Charlie4a|DNA|hAT-Charlie -239671 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 448-78 chr13 112113323 112113697 + 2 NA Intergenic L2a|LINE|L2 6391 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 288-11 chr1 69482942 69483223 + 2 NA Intergenic Intergenic 49827 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 401-153 chr2 35728335 35728586 + 2 NA Intergenic Intergenic 257055 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 384-228 chr3 80350170 80350391 + 2 NA Intergenic L1MC5|LINE|L1 -414617 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 291-152 chr15 72085672 72085850 + 2 NA intron (NM_006901, intron 1 of 41) L1PREC2|LINE|L1 -28497 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 193-130 chr20 46561923 46562073 + 2 NA intron (NM_001193340, intron 12 of 12) intron (NM_001193340, intron 12 of 12) -11344 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 180-64 chr17 73223463 73223572 + 2 NA intron (NM_001098832, intron 2 of 3) intron (NM_001098832, intron 2 of 3) 4200 NM_001289412 84923 Hs.741276 NM_032837 ENSG00000133193 FAM104A - family with sequence similarity 104 member A protein-coding 347-153 chr15 63957026 63957354 + 2 NA intron (NM_014326, intron 4 of 11) L1MA3|LINE|L1 28916 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 569-51 chr13 30294915 30295254 + 2 NA intron (NM_032116, intron 1 of 10) Tigger1|DNA|TcMar-Tigger 11927 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 296-487 chr8 131583094 131583351 + 2 NA Intergenic Intergenic -320871 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 248-313 chr5 62729057 62729217 + 2 NA Intergenic Intergenic 150318 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 252-114 chr14 50158029 50158250 + 2 NA intron (NM_006939, intron 11 of 22) L1MC5|LINE|L1 -41567 NM_024558 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 283-380 chr5 141414566 141414728 + 2 NA exon (NM_018913, exon 1 of 4) exon (NM_018913, exon 1 of 4) 1471 NM_032090 56106 Hs.368160 NM_018913 ENSG00000253846 PCDHGA10 PCDH-GAMMA-A10 protocadherin gamma subfamily A, 10 protein-coding 247-301 chr4 79304944 79305094 + 2 NA intron (NR_038342, intron 4 of 5) intron (NR_038342, intron 4 of 5) 21042 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 544-126 chr2 139698958 139699494 + 2 NA Intergenic Intergenic 801902 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 301-440 chr8 55068540 55068706 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -33405 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 534-110 chr2 51802574 51803032 + 2 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -567845 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 289-229 chr2 80053684 80053869 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -187193 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 436-99 chr16 35332006 35332290 + 2 NA Intergenic Intergenic -31268 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 381-54 chr10 77487154 77487383 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 136396 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 240-334 chr4 132329682 132329898 + 2 NA Intergenic Intergenic -261299 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 445-199 chr4 66509257 66509618 + 2 NA Intergenic Intergenic 232613 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 513-299 chrX 48219900 48220253 + 2 NA Intergenic MER9a1|LTR|ERVK -23281 NM_021015 6758 Hs.166198 NM_021015 ENSG00000165583 SSX5 - SSX family member 5 protein-coding 353-563 chrUn_GL000216v2 55154 55479 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 262-289 chr3 114245476 114245712 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -8016 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 606-86 chr2 101608969 101609417 + 2 NA Intergenic Intergenic -88510 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 363-69 chr10 123874720 123875048 + 2 NA intron (NM_198148, intron 2 of 13) intron (NM_198148, intron 2 of 13) 16923 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 221-205 chr3 192624728 192624900 + 2 NA intron (NM_004113, intron 2 of 5) L1ME4b|LINE|L1 102727 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 456-275 chr6 49896075 49896424 + 2 NA Intergenic L1PB1|LINE|L1 -19153 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 298-371 chr5 89715681 89715853 + 2 NA Intergenic Intergenic 300953 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 347-338 chr4 37474029 37474308 + 2 NA intron (NM_001104629, intron 1 of 3) MSTD|LTR|ERVL-MaLR 20243 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 394-246 chr4 111824021 111824321 + 2 NA Intergenic AluJb|SINE|Alu -321283 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 226-371 chr9 11735804 11735994 + 2 NA Intergenic L1MB7|LINE|L1 -957486 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 185-34 chr11 30875780 30875955 + 2 NA intron (NM_001367979, intron 38 of 38) intron (NM_001367979, intron 38 of 38) 116819 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 291-78 chr11 97422532 97422738 + 2 NA Intergenic L1PA11|LINE|L1 914210 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 379-115 chr16 73461771 73462127 + 2 NA Intergenic L1MD1|LINE|L1 75144 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 355-339 chr3 161920066 161920375 + 2 NA Intergenic L1PA16|LINE|L1 423412 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 448-207 chr5 39384231 39384557 + 2 NA intron (NM_001244871, intron 8 of 13) MER44A|DNA|TcMar-Tigger -19899 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 297-230 chr2 140801332 140801621 + 2 NA intron (NM_018557, intron 32 of 90) intron (NM_018557, intron 32 of 90) -214791 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 350-557 chr9 116673661 116673931 + 2 NA intron (NM_014010, intron 15 of 21) MLT1C|LTR|ERVL-MaLR 13419 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 349-95 chr11 30672070 30672278 + 2 NA Intergenic Intergenic -85821 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 425-313 chr8 121106611 121106865 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -294692 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 279-281 chr3 181676710 181676859 + 2 NA intron (NR_075090, intron 2 of 2) AluSx4|SINE|Alu -35141 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 168-104 chr7 49950270 49950408 + 2 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 142907 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 231-71 chr12 57930814 57931021 + 2 NA TTS (NR_038269) TTS (NR_038269) 5247 NR_038269 100506844 Hs.90286 NR_038269 GIHCG - GIHCG inhibitor of miR-200b/200a/429 expression ncRNA 214-301 chr7 52424010 52424155 + 2 NA Intergenic Intergenic -611551 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 249-299 chr4 63006789 63006958 + 2 NA Intergenic L2a|LINE|L2 -845108 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 571-66 chr19 8341591 8342118 + 2 NA intron (NM_198471, intron 1 of 10) MIR|SINE|MIR 1408 NM_198471 256949 Hs.745036 NM_198471 ENSG00000186994 KANK3 ANKRD47 KN motif and ankyrin repeat domains 3 protein-coding 242-442 chrX 46360654 46360820 + 2 NA Intergenic L1M1|LINE|L1 -33063 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 297-306 chr3 156926713 156926916 + 2 NA intron (NM_001004316, intron 4 of 12) L2b|LINE|L2 100461 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 274-251 chr22 36903029 36903205 + 2 NA Intergenic MER30|DNA|hAT-Charlie -10511 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 323-353 chr3 188076406 188076567 + 2 NA Intergenic Intergenic -77412 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 355-489 chr8 40818266 40818551 + 2 NA intron (NM_024645, intron 2 of 6) intron (NM_024645, intron 2 of 6) 79418 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 252-365 chr6 51277894 51278043 + 2 NA Intergenic Intergenic -343902 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 292-463 chr9 70923587 70923826 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -54654 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 403-101 chr14 68075354 68075656 + 2 NA intron (NM_133509, intron 7 of 10) L1PA15|LINE|L1 251913 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 135-50 chr3 134730447 134730517 + 2 NA Intergenic Intergenic -64778 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 203-44 chr12 18288595 18288751 + 2 NA intron (NM_001288774, intron 3 of 32) intron (NM_001288774, intron 3 of 32) 27133 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 251-351 chr6 141671993 141672194 + 2 NA Intergenic L1MC1|LINE|L1 416706 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 230-82 chr12 46981343 46981517 + 2 NA Intergenic Intergenic -98173 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 306-206 chr18 50661637 50661812 + 2 NA intron (NM_001292039, intron 1 of 4) intron (NM_001292039, intron 1 of 4) 101637 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 446-75 chr12 38570753 38571170 + 2 NA Intergenic Intergenic 254187 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 294-425 chr6 168559959 168560136 + 2 NA intron (NM_001166412, intron 7 of 12) intron (NM_001166412, intron 7 of 12) 118863 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 246-361 chr7 16107415 16107622 + 2 NA intron (NM_001101426, intron 9 of 9) L1MA7|LINE|L1 -102968 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 391-161 chr2 25901420 25901723 + 2 NA Intergenic L1MC3|LINE|L1 -23084 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 381-406 chr9 30167689 30167984 + 2 NA Intergenic L1M2|LINE|L1 240618 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 346-138 chr14 71304640 71304916 + 2 NA Intergenic Intergenic -15698 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 222-309 chr5 143723584 143723734 + 2 NA Intergenic L1PA16|LINE|L1 43799 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 363-144 chr14 72656195 72656504 + 2 NA intron (NM_001280542, intron 8 of 10) Plat_L3|LINE|CR1 139529 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 440-140 chr20 56211088 56211483 + 2 NA Intergenic MER84|LTR|ERV1 -37447 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 196-182 chr4 55395482 55395666 + 2 NA promoter-TSS (NM_018475) promoter-TSS (NM_018475) -383 NM_018475 55858 Hs.479766 NM_018475 ENSG00000134851 TMEM165 CDG2K|FT27|GDT1|TMPT27|TPARL transmembrane protein 165 protein-coding 204-7 chr1 78551168 78551277 + 2 NA Intergenic Intergenic 60248 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 192-154 chr4 166517349 166517504 + 2 NA Intergenic Intergenic 644189 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 377-159 chr17 54747849 54748150 + 2 NA Intergenic L1MA3|LINE|L1 -152692 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 201-123 chr2 99752602 99752718 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -262643 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 476-221 chr5 77676171 77676593 + 2 NA Intergenic L1MC|LINE|L1 -37685 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 382-386 chr7 77391346 77391640 + 2 NA intron (NR_146937, intron 5 of 31) MIR3|SINE|MIR -23705 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 289-151 chr15 68845900 68846149 + 2 NA Intergenic L1MB3|LINE|L1 -25129 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 360-193 chr19 37488117 37488373 + 2 NA 3' UTR (NM_001321992, exon 4 of 4) 3' UTR (NM_001321992, exon 4 of 4) 18674 NM_001321991 148268 Hs.126962 NM_144694 ENSG00000171827 ZNF570 - zinc finger protein 570 protein-coding 368-130 chr13 90228376 90228630 + 2 NA Intergenic Intergenic -2679 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 354-265 chr21 17143862 17144149 + 2 NA Intergenic Intergenic -294885 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 318-420 chr4 157488026 157488337 + 2 NA Intergenic L1ME1|LINE|L1 -84309 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 413-110 chr16 83078238 83078480 + 2 NA intron (NM_001220489, intron 3 of 12) MER1B|DNA|hAT-Charlie -88061 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 371-382 chr8 82270862 82271065 + 2 NA Intergenic Intergenic -428677 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 268-164 chr18 47532612 47532799 + 2 NA intron (NR_147192, intron 1 of 2) MER39|LTR|ERV1 152209 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 352-484 chr7 19045208 19045437 + 2 NA Intergenic L1PA15-16|LINE|L1 72314 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 305-144 chr14 20046531 20046801 + 2 NA Intergenic LTR33B|LTR|ERVL -11908 NM_001004714 390433 Hs.553573 NM_001004714 ENSG00000176253 OR4K13 OR14-27 olfactory receptor family 4 subfamily K member 13 protein-coding 165-68 chr21 16899804 16899904 + 2 NA Intergenic MLT2B4|LTR|ERVL 309617 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 240-19 chr1 169627535 169627700 + 2 NA intron (NM_003005, intron 1 of 16) intron (NM_003005, intron 1 of 16) 2507 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 453-165 chr3 89543664 89544036 + 2 NA Intergenic Intergenic 436229 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 205-287 chr8 130340065 130340199 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -43599 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 183-154 chr8 29882312 29882456 + 2 NA Intergenic Intergenic -39129 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 523-220 chr5 78342696 78343021 + 2 NA Intergenic Intergenic 17683 NR_105014 728769 Hs.586193 NR_105014 ENSG00000245556 SCAMP1-AS1 - SCAMP1 antisense RNA 1 ncRNA 314-196 chr15 80475195 80475387 + 2 NA intron (NM_014862, intron 5 of 18) AluY|SINE|Alu 70909 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 520-254 chr6 52098995 52099496 + 2 NA Intergenic Intergenic -11632 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 385-281 chr4 108526866 108527178 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -30211 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 314-520 chr7 14644975 14645157 + 2 NA intron (NM_001350722, intron 13 of 25) LTR27D|LTR|ERV1 196384 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 297-308 chr3 176675297 176675522 + 2 NA Intergenic MLT2B1|LTR|ERVL -39877 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 409-4 chr1 104934160 104934440 + 2 NA Intergenic Intergenic 684635 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 343-483 chr6 128873884 128874081 + 2 NA Intergenic L1ME2|LINE|L1 -9156 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 299-192 chr2 15324396 15324675 + 2 NA intron (NR_052013, intron 38 of 50) L2b|LINE|L2 236799 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 291-234 chr2 146399212 146399384 + 2 NA Intergenic Intergenic -187759 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 323-291 chr20 19626311 19626559 + 2 NA intron (NM_020689, intron 6 of 16) intron (NM_020689, intron 6 of 16) -260086 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 362-112 chr12 42016249 42016530 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 128485 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 530-62 chr12 104397688 104398167 + 2 NA Intergenic AluSx3|SINE|Alu -59021 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 352-136 chr14 40385190 40385535 + 2 NA Intergenic LTR16E2|LTR|ERVL -569349 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 524-194 chr5 22436382 22436769 + 2 NA intron (NM_004061, intron 2 of 14) LTR8|LTR|ERV1 -222725 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 348-119 chr12 105803982 105804248 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 97341 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 274-156 chr16 82511933 82512141 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -114932 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 358-139 chr15 93517865 93518149 + 2 NA Intergenic L1ME2|LINE|L1 311941 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 243-92 chr12 43424731 43424961 + 2 NA intron (NM_025003, intron 28 of 38) intron (NM_025003, intron 28 of 38) 127357 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 326-291 chr20 17454142 17454461 + 2 NA intron (NM_002594, intron 9 of 11) intron (NM_002594, intron 9 of 11) 77078 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 534-279 chrX 87107186 87107484 + 2 NA Intergenic Intergenic -410467 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 359-490 chr8 128228160 128228446 + 2 NA Intergenic L1MB3|LINE|L1 78187 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 533-232 chr8 99536006 99536385 + 2 NA TTS (NR_030596) TTS (NR_030596) 535 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 512-198 chr4 124478332 124478722 + 2 NA Intergenic Intergenic 79907 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 547-81 chr17 60896841 60897219 + 2 NA intron (NM_001330413, intron 10 of 25) L1PB4|LINE|L1 219179 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 422-249 chr5 159475229 159475460 + 2 NA Intergenic L1MA9|LINE|L1 -9068 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 507-257 chr8 122656798 122657152 + 2 NA Intergenic AluSc|SINE|Alu 37131 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 242-332 chr5 176588543 176588740 + 2 NA intron (NM_017675, intron 21 of 31) (TG)n|Simple_repeat|Simple_repeat 21515 NM_052899 114787 Hs.150549 NM_052899 ENSG00000169258 GPRIN1 GRIN1 G protein regulated inducer of neurite outgrowth 1 protein-coding 445-178 chr3 113349942 113350365 + 2 NA intron (NM_001164496, intron 22 of 34) HERV9N-int|LTR|ERV1 -53845 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 358-61 chr11 23209641 23209841 + 2 NA Intergenic Intergenic 209449 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 345-352 chr3 78962208 78962394 + 2 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 57158 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 324-141 chr13 72479871 72480140 + 2 NA Intergenic L1MA8|LINE|L1 247624 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 438-221 chr5 84946740 84947166 + 2 NA Intergenic Intergenic -562073 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 507-176 chr3 197897113 197897530 + 2 NA intron (NM_001323029, intron 9 of 11) intron (NM_001323029, intron 9 of 11) 52604 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 138-44 chr2 139628881 139628962 + 2 NA Intergenic Intergenic 731597 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 219-330 chr7 33136103 33136264 + 2 NA intron (NM_001348044, intron 1 of 18) L1MB7|LINE|L1 6619 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 204-8 chr1 79871620 79871791 + 2 NA Intergenic Intergenic -664050 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 296-98 chr12 21532636 21532904 + 2 NA non-coding (NR_135188, exon 3 of 3) non-coding (NR_135188, exon 3 of 3) 4845 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 360-282 chr22 29961137 29961408 + 2 NA intron (NM_153051, intron 2 of 18) L1M5|LINE|L1 -45777 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 331-518 chr8 37428361 37428642 + 2 NA intron (NR_121620, intron 5 of 6) L1ME3E|LINE|L1 65412 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 248-248 chr3 102320746 102320987 + 2 NA Intergenic L1PA15|LINE|L1 -114149 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 351-448 chr7 49706588 49706773 + 2 NA Intergenic MIR3|SINE|MIR -66958 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 317-280 chr20 50485655 50485852 + 2 NA Intergenic AluJr|SINE|Alu -24568 NM_001278618 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 271-159 chr17 34163610 34163841 + 2 NA Intergenic Intergenic -6919 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 544-176 chr5 46040584 46041080 + 2 NA Intergenic ALR/Alpha|Satellite|centr -344452 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 381-113 chr15 66815155 66815434 + 2 NA Intergenic L1MC2|LINE|L1 113058 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 438-24 chr1 209067707 209068124 + 2 NA Intergenic Intergenic 95461 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 213-279 chr8 90317102 90317276 + 2 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 95701 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 322-100 chr11 104447834 104448016 + 2 NA Intergenic L1PA11|LINE|L1 161377 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 421-86 chr14 78453462 78453690 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 49857 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 241-368 chr7 46842563 46842777 + 2 NA Intergenic Intergenic -145548 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 511-255 chr8 59768149 59768487 + 2 NA Intergenic MER57A1|LTR|ERV1 513082 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 346-202 chr17 76010362 76010582 + 2 NA exon (NM_001320747, exon 22 of 22) exon (NM_001320747, exon 22 of 22) 9566 NM_001258 1018 Hs.706766 NM_001258 ENSG00000250506 CDK3 - cyclin dependent kinase 3 protein-coding 439-156 chr2 207520942 207521303 + 2 NA Intergenic Intergenic -8840 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 313-229 chr2 11990007 11990216 + 2 NA Intergenic Intergenic -17005 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 317-325 chr3 189946996 189947182 + 2 NA Intergenic Intergenic 117167 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 348-71 chr10 128790044 128790281 + 2 NA Intergenic L1ME3B|LINE|L1 -122671 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 378-400 chr7 41616708 41617024 + 2 NA Intergenic Intergenic -77053 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 122-28 chr2 174867024 174867087 + 2 NA intron (NR_038133, intron 5 of 11) (T)n|Simple_repeat|Simple_repeat -19437 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 216-112 chr15 49672925 49673099 + 2 NA Intergenic Intergenic 51964 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 331-235 chr19 28194029 28194286 + 2 NA Intergenic Intergenic -400217 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 297-239 chr2 175743177 175743350 + 2 NA Intergenic Intergenic 259004 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 530-223 chr6 164888754 164889085 + 2 NA Intergenic MER106B|DNA|hAT-Charlie -66856 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 315-271 chr20 6324241 6324475 + 2 NA Intergenic Intergenic -102374 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 406-311 chr9 37143733 37144034 + 2 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 23285 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 433-297 chr9 30850695 30851071 + 2 NA Intergenic Intergenic -442429 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 321-332 chr20 40825205 40825394 + 2 NA Intergenic HAL1|LINE|L1 -110676 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 504-63 chr14 21269207 21269621 + 2 NA promoter-TSS (NM_001077443) promoter-TSS (NM_001077443) 65 NM_004500 3183 Hs.508848 NM_004500 ENSG00000092199 HNRNPC C1|C2|HNRNP|HNRPC|SNRPC heterogeneous nuclear ribonucleoprotein C (C1/C2) protein-coding 203-262 chrX 155660925 155661079 + 2 NA intron (NM_001304990, intron 1 of 2) L1PB4|LINE|L1 -48050 NM_018196 55217 Hs.133321 NM_018196 ENSG00000185973 TMLHE AUTSX6|BBOX2|TMLD|TMLH|TMLHED|XAP130 trimethyllysine hydroxylase, epsilon protein-coding 191-18 chr1 199654741 199654911 + 2 NA Intergenic MIRb|SINE|MIR -372884 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 265-409 chr9 18774972 18775234 + 2 NA intron (NM_001040272, intron 17 of 28) L1MB7|LINE|L1 201797 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 233-115 chr16 13762830 13763018 + 2 NA Intergenic MIR|SINE|MIR -157233 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 330-303 chr2 178614913 178615231 + 2 NA intron (NM_001256850, intron 209 of 312) intron (NM_001256850, intron 209 of 312) 91881 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 385-28 chr10 52531333 52531711 + 2 NA Intergenic Intergenic -60989 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 1088-5 chr17 65811123 65811992 + 2 NA intron (NR_126542, intron 1 of 5) L2c|LINE|L2 14894 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 132-52 chr3 110571920 110572017 + 2 NA Intergenic L1MEf|LINE|L1 497991 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 356-348 chr4 30311188 30311386 + 2 NA Intergenic L1ME3|LINE|L1 -409082 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 230-305 chr5 106573811 106573999 + 2 NA Intergenic Intergenic 437109 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 237-365 chr7 153158929 153159136 + 2 NA Intergenic MER20|DNA|hAT-Charlie 253202 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 211-270 chr7 15880727 15880884 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 192427 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 316-401 chr4 75377113 75377386 + 2 NA Intergenic Intergenic 23173 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 484-104 chr19 28071450 28071786 + 2 NA Intergenic L1PA3|LINE|L1 -277678 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 513-291 chr8 139168910 139169265 + 2 NA Intergenic L1M2|LINE|L1 -255046 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 363-313 chr4 32558780 32559072 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 207888 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 192-77 chr16 27955390 27955545 + 2 NA intron (NM_001109763, intron 2 of 6) HAL1|LINE|L1 -67310 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 262-107 chr13 36734434 36734614 + 2 NA Intergenic MIR|SINE|MIR 60504 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 288-208 chr2 123856994 123857245 + 2 NA Intergenic L1PA10|LINE|L1 168055 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 672-81 chr4 80332464 80332884 + 2 NA Intergenic L2b|LINE|L2 -3046 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 373-394 chr7 144794898 144795203 + 2 NA intron (NM_001350887, intron 1 of 6) L1MC5|LINE|L1 40890 NM_001350879 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 278-33 chr10 58773192 58773371 + 2 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 58266 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 256-118 chr14 42671936 42672185 + 2 NA Intergenic Intergenic 1065204 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 265-423 chrX 57657933 57658166 + 2 NA Intergenic PRIMA4-int|LTR|ERV1 22211 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 197-234 chrX 122557329 122557520 + 2 NA Intergenic Intergenic -626819 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 361-156 chr15 64258619 64258827 + 2 NA intron (NM_001329607, intron 3 of 11) intron (NM_001329607, intron 3 of 11) -95568 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 304-144 chr14 59606480 59606676 + 2 NA intron (NM_021136, intron 4 of 8) MLT1A0|LTR|ERVL-MaLR 3561 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 208-202 chr5 22956660 22956844 + 2 NA Intergenic Intergenic -103408 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 292-430 chr8 78954746 78954944 + 2 NA Intergenic L1MB7|LINE|L1 117316 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 302-354 chr5 115908213 115908410 + 2 NA intron (NM_001318093, intron 6 of 6) Tigger12A|DNA|TcMar-Tigger -48260 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 327-258 chr2 52961788 52962064 + 2 NA Intergenic Intergenic -259311 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 447-190 chr4 34479293 34479728 + 2 NA Intergenic Intergenic -209763 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 244-225 chr3 46029550 46029767 + 2 NA Intergenic L1M4|LINE|L1 -2175 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 336-350 chr22 28862734 28863013 + 2 NA Intergenic Intergenic -20699 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 576-5 chr1 118669114 118669665 + 2 NA Intergenic L1MEf|LINE|L1 318954 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 522-123 chr2 18714993 18715347 + 2 NA Intergenic Intergenic -125590 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 471-244 chr7 7486159 7486508 + 2 NA intron (NM_001037763, intron 13 of 34) L1MD|LINE|L1 49540 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 411-318 chrX 14227428 14227672 + 2 NA Intergenic L1MEd|LINE|L1 -16715 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 270-99 chr13 81489979 81490220 + 2 NA Intergenic MIR|SINE|MIR -263116 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 216-296 chr5 180558921 180559113 + 2 NA intron (NM_001370474, intron 3 of 10) L1MDa|LINE|L1 17363 NM_001370474 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 598-158 chrX 76915672 76916112 + 2 NA intron (NR_110403, intron 1 of 3) intron (NR_110403, intron 1 of 3) 3468 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 304-167 chr15 76305928 76306101 + 2 NA intron (NM_000126, intron 1 of 11) intron (NM_000126, intron 1 of 11) 5455 NM_001127716 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein subunit alpha protein-coding 258-353 chr6 140374897 140375114 + 2 NA Intergenic Intergenic 169753 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 228-346 chr8 116802028 116802192 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 35586 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 190-100 chr2 233331299 233331405 + 2 NA intron (NM_000541, intron 9 of 15) intron (NM_000541, intron 9 of 15) -23142 NM_152879 8527 Hs.471675 NM_003648 ENSG00000077044 DGKD DGKdelta|dgkd-2 diacylglycerol kinase delta protein-coding 491-131 chr2 134841801 134842137 + 2 NA intron (NM_138326, intron 1 of 9) intron (NM_138326, intron 1 of 9) 3353 NM_001307983 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 329-587 chr8 122898032 122898214 + 2 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 116468 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 340-333 chr21 27583111 27583373 + 2 NA Intergenic Intergenic -139137 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 258-187 chr2 65653537 65653751 + 2 NA Intergenic Intergenic -221045 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 490-268 chr7 63103046 63103462 + 2 NA Intergenic L2c|LINE|L2 200802 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 340-104 chr12 34519188 34519358 + 2 NA Intergenic ALR/Alpha|Satellite|centr 496777 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 640-85 chr3 145933894 145934273 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 135102 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 223-364 chr9 73415384 73415601 + 2 NA Intergenic Intergenic 263627 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 146-59 chr3 107505128 107505219 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -17789 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 249-101 chr13 58154492 58154699 + 2 NA Intergenic Intergenic -11232 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 273-227 chr2 106868616 106868828 + 2 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 17306 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 225-250 chr4 116246559 116246759 + 2 NA Intergenic Intergenic -53066 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 532-288 chrX 13463310 13463803 + 2 NA Intergenic Intergenic -106045 NM_015507 25975 Hs.12844 NM_015507 ENSG00000198759 EGFL6 MAEG|W80 EGF like domain multiple 6 protein-coding 411-185 chr3 114776968 114777337 + 2 NA intron (NM_001164343, intron 4 of 11) intron (NM_001164343, intron 4 of 11) -18045 NM_001164345 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 179-53 chr2 196151908 196152040 + 2 NA intron (NM_004226, intron 3 of 7) intron (NM_004226, intron 3 of 7) 19604 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 410-209 chr4 32447438 32447798 + 2 NA Intergenic Intergenic 96580 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 268-374 chr7 55046783 55047015 + 2 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 27867 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 498-134 chr2 145033961 145034285 + 2 NA intron (NR_033870, intron 3 of 4) THE1A|LTR|ERVL-MaLR 366156 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 437-303 chrX 87058912 87059189 + 2 NA Intergenic L1ME2|LINE|L1 -458752 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 422-321 chrX 139060316 139060698 + 2 NA intron (NM_001139501, intron 2 of 7) intron (NM_001139501, intron 2 of 7) 144516 NM_001139500 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 350-210 chr2 35123559 35123896 + 2 NA Intergenic Intergenic -347678 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 347-523 chr8 118426808 118427021 + 2 NA intron (NM_001349811, intron 3 of 4) Charlie18a|DNA|hAT-Charlie -194087 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 342-53 chr10 14917284 14917469 + 2 NA intron (NR_110297, intron 15 of 16) L1ME1|LINE|L1 36720 NM_001350966 64421 Hs.655932 NM_022487 ENSG00000152457 DCLRE1C A-SCID|DCLREC1C|RS-SCID|SCIDA|SNM1C DNA cross-link repair 1C protein-coding 439-44 chr11 14147171 14147533 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 184629 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 333-362 chr3 112636362 112636640 + 2 NA intron (NM_199512, intron 2 of 7) intron (NM_199512, intron 2 of 7) 4642 NM_199511 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 860-36 chr5 4352564 4353330 + 2 NA Intergenic Intergenic -420534 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 324-510 chr7 112538175 112538456 + 2 NA Intergenic Intergenic 57324 NM_182597 286006 Hs.396189 NM_182597 ENSG00000181016 LSMEM1 C7orf53 leucine rich single-pass membrane protein 1 protein-coding 578-69 chr17 40526632 40527061 + 2 NA Intergenic LTR79|LTR|ERVL -25223 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 336-77 chr10 105634024 105634211 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 186216 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 290-62 chr10 114289514 114289740 + 2 NA intron (NM_001272046, intron 12 of 13) MIRb|SINE|MIR 50013 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 258-392 chr8 88428392 88428526 + 2 NA Intergenic Intergenic -100976 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 399-85 chr14 56415472 56415747 + 2 NA Intergenic MLT2B3|LTR|ERVL -98722 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 303-371 chr5 114965205 114965374 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -191876 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 252-446 chr9 29179950 29180165 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 32242 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 326-127 chr12 61632972 61633204 + 2 NA Intergenic Intergenic 559751 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 216-235 chr3 140879133 140879314 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -62613 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 187-90 chr2 228997554 228997699 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 234466 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 355-345 chr3 179516981 179517199 + 2 NA Intergenic LTR7|LTR|ERV1 -45790 NM_177989 86 Hs.435326 NM_004301 ENSG00000136518 ACTL6A ACTL6|ARPN-BETA|Arp4|BAF53A|INO80K actin like 6A protein-coding 360-85 chr12 40520481 40520717 + 2 NA intron (NM_173600, intron 99 of 173) intron (NM_173600, intron 99 of 173) 127205 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 261-150 chr17 70645321 70645556 + 2 NA Intergenic MIR|SINE|MIR 475903 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 382-44 chr10 84679771 84680066 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 254749 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 473-18 chr1 196326659 196327024 + 2 NA exon (NM_198503, exon 19 of 28) exon (NM_198503, exon 19 of 28) -238126 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 295-183 chr18 10034689 10034844 + 2 NA Intergenic L1ME4a|LINE|L1 120750 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 161-108 chr7 88617878 88617991 + 2 NA Intergenic Intergenic -141766 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 354-96 chr11 133210762 133211002 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -267114 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 626-131 chr7 115174289 115174804 + 2 NA intron (NR_126407, intron 1 of 4) L1PA17|LINE|L1 56809 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 387-296 chr5 138804077 138804440 + 2 NA intron (NM_001323985, intron 3 of 17) MIRb|SINE|MIR -50334 NR_134244 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 212-233 chr4 63128392 63128570 + 2 NA Intergenic Intergenic -966716 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 192-202 chr8 48808189 48808299 + 2 NA Intergenic L1MDa|LINE|L1 -72933 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 336-454 chr5 76450934 76451133 + 2 NA intron (NM_006633, intron 1 of 35) intron (NM_006633, intron 1 of 35) 47748 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 358-438 chr7 53403328 53403682 + 2 NA Intergenic Intergenic 367872 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 208-248 chr7 56265558 56265696 + 2 NA Intergenic Intergenic -149210 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 264-116 chr13 88717606 88717805 + 2 NA Intergenic Intergenic 90852 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 330-256 chr2 46256095 46256339 + 2 NA Intergenic L1MC2|LINE|L1 -41190 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 229-163 chr18 68503459 68503618 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 211570 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 226-185 chr2 153826325 153826503 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -45508 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 442-72 chr14 39737987 39738277 + 2 NA Intergenic Intergenic -305632 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 527-87 chr14 62340984 62341311 + 2 NA Intergenic Intergenic -201174 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 344-222 chr2 12037661 12037993 + 2 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 30711 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 202-239 chr7 41654466 41654619 + 2 NA Intergenic MER112|DNA|hAT-Charlie -39377 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 225-281 chr5 59822001 59822140 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -53222 NM_001364602 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 618-137 chr8 137715360 137715800 + 2 NA Intergenic MLT2B2|LTR|ERVL -301992 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 350-49 chr10 61818405 61818617 + 2 NA Intergenic L1PA13|LINE|L1 -83188 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 673-44 chr18 68610012 68610509 + 2 NA Intergenic LTR84a|LTR|ERVL 104848 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 672-33 chr16 7009682 7010319 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 236191 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 362-250 chr21 14633068 14633318 + 2 NA intron (NM_001256579, intron 1 of 6) (CT)n|Simple_repeat|Simple_repeat 9914 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 314-105 chr11 94402713 94402959 + 2 NA Intergenic Intergenic -1417 NM_001330345 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 296-92 chr12 14322794 14323002 + 2 NA Intergenic Intergenic -42734 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 679-32 chr15 52601668 52602220 + 2 NA intron (NM_001286495, intron 6 of 11) L1MEd|LINE|L1 -32498 NM_001306191 10776 Hs.512908 NM_006628 ENSG00000128989 ARPP19 ARPP-16|ARPP-19|ARPP16|ENSAL cAMP regulated phosphoprotein 19 protein-coding 490-300 chr8 124930179 124930507 + 2 NA Intergenic Intergenic -11665 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 170-106 chr4 52854937 52855082 + 2 NA Intergenic Intergenic -7308 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 309-412 chr4 161607003 161607243 + 2 NA intron (NM_001128428, intron 7 of 14) intron (NM_001128428, intron 7 of 14) -415610 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 290-270 chr3 11075902 11076153 + 2 NA Intergenic Intergenic -56803 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 417-309 chr9 119026535 119026808 + 2 NA Intergenic MIRc|SINE|MIR 342764 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 344-189 chr17 71994742 71994989 + 2 NA Intergenic Intergenic 31114 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 335-540 chr8 109054023 109054317 + 2 NA Intergenic Intergenic -32458 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 322-173 chr15 58049189 58049390 + 2 NA intron (NM_170696, intron 1 of 11) intron (NM_170696, intron 1 of 11) -15936 NR_147215 283665 Hs.638961 NR_147215 LOC283665 - uncharacterized LOC283665 ncRNA 368-224 chr2 22334308 22334569 + 2 NA Intergenic AluJo|SINE|Alu -202041 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 451-87 chr16 64927356 64927694 + 2 NA Intergenic L1PA16|LINE|L1 194538 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 368-117 chr12 112688237 112688563 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 6776 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 350-27 chr1 187039675 187039937 + 2 NA Intergenic Intergenic -53036 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 145-88 chr8 83975764 83975875 + 2 NA Intergenic Intergenic -206968 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 312-247 chr2 103433149 103433390 + 2 NA Intergenic Intergenic -448840 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 454-156 chr2 77485636 77486024 + 2 NA intron (NR_146416, intron 1 of 1) AluJb|SINE|Alu 36546 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 448-135 chr20 33072746 33073038 + 2 NA intron (NM_182658, intron 14 of 14) intron (NM_182658, intron 14 of 14) -8620 NM_182519 149954 Hs.38961 NM_182519 ENSG00000186191 BPIFB4 C20orf186|LPLUNC4|RY2G5|dJ726C3.5 BPI fold containing family B member 4 protein-coding 454-43 chr10 116853374 116853750 + 2 NA intron (NM_001242699, intron 1 of 13) intron (NM_001242699, intron 1 of 13) -3840 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 369-144 chr16 10345338 10345695 + 2 NA Intergenic AluSc8|SINE|Alu -40545 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 185-83 chr18 62684137 62684282 + 2 NA Intergenic MER4D|LTR|ERV1 -31332 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 229-299 chr5 44912628 44912762 + 2 NA Intergenic Intergenic 103748 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 366-329 chr4 159909939 159910176 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -132273 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 522-66 chr12 85010359 85010674 + 2 NA Intergenic Intergenic 25761 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 171-77 chr3 10912397 10912536 + 2 NA intron (NM_014229, intron 7 of 13) intron (NM_014229, intron 7 of 13) -80268 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 230-344 chr7 34325989 34326142 + 2 NA Intergenic MLT2C1|LTR|ERVL -332153 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 495-77 chr16 64026100 64026582 + 2 NA Intergenic Intergenic 1095722 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 319-568 chr9 20275131 20275340 + 2 NA Intergenic Intergenic 136003 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 304-399 chr4 180900104 180900308 + 2 NA Intergenic L1M1|LINE|L1 258943 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 357-288 chr3 145663176 145663381 + 2 NA Intergenic L1PA16|LINE|L1 405907 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 412-22 chr10 23819380 23819702 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 124814 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 397-233 chr4 117706144 117706364 + 2 NA Intergenic L1PA16|LINE|L1 -128147 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 398-125 chr16 23201715 23201938 + 2 NA intron (NM_001039, intron 6 of 12) AluJr|SINE|Alu 19081 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 251-12 chr1 113675289 113675501 + 2 NA intron (NM_001142782, intron 19 of 20) L2c|LINE|L2 83760 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 248-343 chr6 45845144 45845345 + 2 NA Intergenic Intergenic 92353 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 372-193 chr17 70246024 70246392 + 2 NA Intergenic Intergenic 76673 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 163-58 chr18 12714116 12714240 + 2 NA intron (NM_147163, intron 3 of 6) MER3|DNA|hAT-Charlie 11136 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 542-32 chr11 14083555 14084070 + 2 NA intron (NM_006108, intron 5 of 15) Charlie1|DNA|hAT-Charlie 121089 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 261-86 chr13 31100040 31100205 + 2 NA Intergenic Intergenic 61782 NM_001349704 10808 Hs.743267 NM_006644 ENSG00000120694 HSPH1 HSP105|HSP105A|HSP105B|NY-CO-25 heat shock protein family H (Hsp110) member 1 protein-coding 267-275 chr3 180447617 180447796 + 2 NA Intergenic Intergenic 33533 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 256-92 chr12 97554394 97554591 + 2 NA intron (NR_152618, intron 8 of 10) intron (NR_152618, intron 8 of 10) -9320 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 361-211 chr2 41478709 41478921 + 2 NA Intergenic Intergenic -398740 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 586-63 chr17 74398817 74399236 + 2 NA Intergenic L1ME1|LINE|L1 31520 NM_181790 350383 Hs.574368 NM_181790 ENSG00000257008 GPR142 GPRg1b|PGR2 G protein-coupled receptor 142 protein-coding 272-214 chr2 134584090 134584272 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 134819 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 329-185 chr15 50076011 50076319 + 2 NA intron (NR_073597, intron 2 of 26) intron (NR_073597, intron 2 of 26) 37214 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 329-103 chr11 112874106 112874395 + 2 NA Intergenic Intergenic -87170 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 203-237 chr8 119218936 119219082 + 2 NA intron (NR_149111, intron 1 of 1) intron (NR_149111, intron 1 of 1) 10646 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 260-437 chr8 90073894 90074070 + 2 NA intron (NM_001366795, intron 2 of 9) intron (NM_001366795, intron 2 of 9) 8897 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 341-315 chr22 33946241 33946427 + 2 NA Intergenic Intergenic -23446 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 287-5 chr1 34107050 34107311 + 2 NA intron (NM_052896, intron 1 of 69) intron (NM_052896, intron 1 of 69) 58094 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 336-157 chr14 32392215 32392483 + 2 NA intron (NM_004274, intron 1 of 13) L1MC4a|LINE|L1 63051 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 220-176 chr2 107393623 107393779 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -44176 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 222-51 chr10 115421170 115421327 + 2 NA intron (NM_207303, intron 20 of 28) L1MA6|LINE|L1 327883 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 287-432 chr9 34238114 34238282 + 2 NA intron (NR_033243, intron 4 of 7) L1MB7|LINE|L1 59155 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 589-51 chr18 73194477 73194819 + 2 NA intron (NR_034133, intron 3 of 5) intron (NR_034133, intron 3 of 5) 69850 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 660-31 chr15 87615056 87615679 + 2 NA Intergenic Intergenic 38438 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 295-492 chr9 31926465 31926719 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger -458011 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 455-92 chr17 54121532 54121904 + 2 NA Intergenic L1ME1|LINE|L1 298791 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 364-372 chr6 9450735 9450972 + 2 NA Intergenic Intergenic 798644 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 395-78 chr12 114942357 114942601 + 2 NA Intergenic Intergenic -258304 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 198-40 chr11 58244138 58244321 + 2 NA Intergenic L1MA4|LINE|L1 -15311 NM_001004471 219960 Hs.553646 NM_001004471 ENSG00000180475 OR10Q1 OR11-233 olfactory receptor family 10 subfamily Q member 1 protein-coding 353-164 chr15 91152523 91152794 + 2 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 50862 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 217-117 chr14 61906428 61906578 + 2 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -21192 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 320-330 chr22 36667932 36668167 + 2 NA intron (NM_006078, intron 1 of 3) MIR|SINE|MIR 34809 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 286-322 chr4 131463204 131463355 + 2 NA Intergenic Intergenic -301559 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 282-164 chr17 56735813 56735964 + 2 NA Intergenic L2c|LINE|L2 98032 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 148-79 chr6 61557297 61557377 + 2 NA intron (NR_146870, intron 14 of 15) intron (NR_146870, intron 14 of 15) -16793 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 414-273 chr5 148322677 148323035 + 2 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 10433 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 344-521 chr9 88764433 88764620 + 2 NA Intergenic L1ME1|LINE|L1 -18621 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 350-526 chr8 111335323 111335549 + 2 NA Intergenic LTR1A2|LTR|ERV1 -41203 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 305-320 chr21 28693072 28693245 + 2 NA Intergenic L1MB7|LINE|L1 153840 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 340-62 chr10 113578277 113578460 + 2 NA intron (NM_001177660, intron 6 of 12) intron (NM_001177660, intron 6 of 12) 25315 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 317-213 chr2 9554692 9554966 + 2 NA intron (NM_003183, intron 1 of 18) intron (NM_003183, intron 1 of 18) 1001 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 205-163 chr2 241144206 241144353 + 2 NA intron (NM_001252120, intron 2 of 18) intron (NM_001252120, intron 2 of 18) 5193 NM_001252122 23178 Hs.397891 NM_015148 ENSG00000115687 PASK PASKIN|STK37 PAS domain containing serine/threonine kinase protein-coding 309-6 chr1 57943312 57943549 + 2 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 82849 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 435-216 chr6 10851193 10851519 + 2 NA Intergenic Intergenic -12801 NM_001242385 4117 Hs.446125 NM_005906 ENSG00000111837 MAK RP62 male germ cell associated kinase protein-coding 234-295 chr5 4603257 4603444 + 2 NA Intergenic LTR52|LTR|ERVL -170131 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 202-13 chr1 177554701 177554872 + 2 NA Intergenic L1MEc|LINE|L1 -145738 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 258-114 chr14 31881369 31881553 + 2 NA Intergenic Intergenic -63392 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 287-315 chr5 58650432 58650712 + 2 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 67497 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 215-197 chr3 88417873 88417992 + 2 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 79476 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 202 chr1 33564517 33564676 + 2 NA intron (NM_001281956, intron 53 of 70) FLAM_A|SINE|Alu 91951 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 346-136 chr14 65783201 65783519 + 2 NA Intergenic Intergenic 312258 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 324-572 chr9 108398037 108398212 + 2 NA Intergenic Intergenic 457862 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 299-63 chr10 90137849 90138009 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -180556 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 281-187 chr19 43884064 43884252 + 2 NA Intergenic L1MEc|LINE|L1 -4022 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 369-393 chr8 5913751 5914109 + 2 NA Intergenic Intergenic 492618 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 393-146 chr18 73957490 73957868 + 2 NA Intergenic Intergenic 190155 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 504-126 chr2 76181261 76181692 + 2 NA Intergenic L1M1|LINE|L1 -470561 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 180-122 chr4 174651520 174651659 + 2 NA intron (NM_001042543, intron 8 of 8) intron (NM_001042543, intron 8 of 8) -128691 NM_001145816 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 478-62 chr12 41539814 41540241 + 2 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 102288 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 129-34 chr2 47113570 47113650 + 2 NA intron (NM_001163561, intron 5 of 6) intron (NM_001163561, intron 5 of 6) 41698 NM_001163561 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 323-360 chr4 35031302 35031497 + 2 NA Intergenic Intergenic -761652 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 285-342 chr5 82719864 82720060 + 2 NA Intergenic L1M5|LINE|L1 -120193 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 458-170 chr3 83143646 83143936 + 2 NA Intergenic Intergenic 1157649 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 432-241 chr6 28203398 28203710 + 2 NA Intergenic MER21C|LTR|ERVL 15375 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 323-405 chr5 26575993 26576172 + 2 NA Intergenic Intergenic 462504 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 285-137 chr15 83933285 83933512 + 2 NA intron (NM_207517, intron 17 of 29) THE1D-int|LTR|ERVL-MaLR -146789 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 333-590 chr8 135108996 135109242 + 2 NA Intergenic L1MA2|LINE|L1 -125012 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 178-14 chr10 15992479 15992609 + 2 NA Intergenic Intergenic -132011 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 326-525 chr8 70752004 70752187 + 2 NA Intergenic Intergenic 82756 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 410-220 chr4 81906742 81907090 + 2 NA Intergenic Intergenic -435009 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 251-267 chr4 45051250 45051450 + 2 NA Intergenic L2|LINE|L2 -324716 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 304-356 chr3 137429652 137429804 + 2 NA Intergenic HAL1ME|LINE|L1 -334587 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 175-117 chr4 107043062 107043195 + 2 NA Intergenic Intergenic -6815 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 304-297 chr20 31272702 31272921 + 2 NA Intergenic L1M2|LINE|L1 15147 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 296-377 chr5 92183561 92183836 + 2 NA Intergenic Intergenic -800381 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 432-96 chr16 71526895 71527319 + 2 NA intron (NM_001166395, intron 1 of 1) intron (NM_001166395, intron 1 of 1) 681 NM_001166395 10164 Hs.251383 NM_005769 ENSG00000140835 CHST4 GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST carbohydrate sulfotransferase 4 protein-coding 324-67 chr10 82911439 82911727 + 2 NA intron (NR_163253, intron 6 of 10) L1MCa|LINE|L1 -678663 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 173-57 chr18 7528528 7528637 + 2 NA Intergenic Intergenic -38734 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 435-69 chr12 129511485 129511722 + 2 NA intron (NM_133448, intron 3 of 8) L1ME1|LINE|L1 303002 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 649-62 chr20 24325345 24325757 + 2 NA Intergenic Intergenic 125784 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 290-306 chr4 34009562 34009770 + 2 NA intron (NR_125902, intron 1 of 4) L1ME3G|LINE|L1 30227 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 197-29 chr10 64910056 64910213 + 2 NA intron (NR_134456, intron 1 of 1) intron (NR_134456, intron 1 of 1) 14384 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 177-122 chr4 108473666 108473803 + 2 NA Intergenic Intergenic -83499 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 434-158 chr2 176205926 176206352 + 2 NA Intergenic Intergenic -17181 NR_033979 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|MIR7704HG|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 284-234 chr20 40131518 40131715 + 2 NA Intergenic Intergenic 127155 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 390-54 chr11 35403722 35404026 + 2 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 15684 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 334-297 chr2 208135608 208135919 + 2 NA intron (NR_038437, intron 1 of 2) intron (NR_038437, intron 1 of 2) -5935 NM_020989 1420 Hs.72910 NM_020989 ENSG00000163254 CRYGC CCL|CRYG3|CTRCT2 crystallin gamma C protein-coding 272-190 chr2 61976266 61976489 + 2 NA intron (NM_152516, intron 1 of 2) L1MC|LINE|L1 70735 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 319-101 chr11 115372202 115372484 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -24413 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 281-142 chr16 8501758 8501976 + 2 NA Intergenic MLT1G-int|LTR|ERVL-MaLR 87971 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 232-64 chr11 115233565 115233758 + 2 NA intron (NM_001098517, intron 3 of 8) intron (NM_001098517, intron 3 of 8) -99916 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 325-469 chr5 170804962 170805215 + 2 NA intron (NM_001291985, intron 6 of 8) Kanga1c|DNA|TcMar-Tc2 21363 NM_014211 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 391-195 chr2 217241718 217242045 + 2 NA Intergenic Intergenic -40852 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 283-180 chr17 56295408 56295645 + 2 NA intron (NM_001370326, intron 3 of 20) MER5A|DNA|hAT-Charlie 142051 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 293-332 chr5 19576064 19576268 + 2 NA intron (NM_001349559, intron 7 of 12) L1MA6|LINE|L1 310106 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 538-183 chr4 127724927 127725358 + 2 NA 3' UTR (NM_015693, exon 16 of 16) 3' UTR (NM_015693, exon 16 of 16) -5258 NM_031291 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 406-73 chr14 43565620 43565959 + 2 NA Intergenic L1MCb|LINE|L1 941494 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 259-410 chr8 120832563 120832734 + 2 NA Intergenic Intergenic -20602 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 425-21 chr1 221078671 221078940 + 2 NA Intergenic MLT2D|LTR|ERVL -198665 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 229-367 chr7 95463717 95463890 + 2 NA Intergenic Intergenic -22098 NM_145872 51666 Hs.602765 NM_016116 ENSG00000005981 ASB4 ASB-4 ankyrin repeat and SOCS box containing 4 protein-coding 378-432 chr8 62905386 62905691 + 2 NA intron (NM_001304533, intron 4 of 6) L2|LINE|L2 -72323 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 213-299 chr9 35318165 35318372 + 2 NA intron (NM_006377, intron 10 of 38) intron (NM_006377, intron 10 of 38) -23628 NM_001371188 352-155 chr14 86127208 86127398 + 2 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 192625 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 350-502 chr8 16190054 16190237 + 2 NA intron (NM_002445, intron 1 of 8) AluSx1|SINE|Alu 2506 NM_138715 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 283-267 chr20 55531218 55531451 + 2 NA Intergenic Intergenic -104137 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 663-8 chr10 5382524 5383026 + 2 NA Intergenic MER41C|LTR|ERV1 17809 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 286-326 chr4 160851642 160851816 + 2 NA Intergenic Intergenic -1073945 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 186-146 chr7 12855105 12855232 + 2 NA Intergenic Intergenic 167535 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 316-93 chr11 33385833 33386084 + 2 NA intron (NM_012194, intron 1 of 20) L1ME1|LINE|L1 9850 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 546-245 chr8 122576043 122576447 + 2 NA Intergenic Intergenic -7601 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 398-148 chr19 45788479 45788834 + 2 NA intron (NM_004943, intron 2 of 4) AluJo|SINE|Alu 4189 NM_004943 1762 Hs.515474 NM_004943 ENSG00000185800 DMWD D19S593E|DMR-N9|DMRN9|gene59 DM1 locus, WD repeat containing protein-coding 544-162 chr4 47797328 47797812 + 2 NA intron (NM_006587, intron 2 of 21) intron (NM_006587, intron 2 of 21) -33775 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 438-103 chr19 16790741 16791005 + 2 NA intron (NM_001007525, intron 13 of 18) MER33|DNA|hAT-Charlie -38525 NM_015260 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 703-97 chr8 126734157 126734792 + 2 NA Intergenic AluSx1|SINE|Alu -175996 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 652-35 chr13 90945083 90945511 + 2 NA Intergenic Intergenic -18700 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 283-381 chr5 149522564 149522836 + 2 NA intron (NM_001271742, intron 2 of 9) intron (NM_001271742, intron 2 of 9) 27665 NM_001271742 1452 Hs.529862 NM_001892 ENSG00000113712 CSNK1A1 CK1|CK1a|CKIa|HEL-S-77p|HLCDGP1|PRO2975 casein kinase 1 alpha 1 protein-coding 589-25 chr12 65681703 65682071 + 2 NA Intergenic Intergenic -39515 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 333-107 chr12 4799836 4800161 + 2 NA Intergenic MIR|SINE|MIR -9178 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 313-9 chr1 65945512 65945766 + 2 NA intron (NM_002600, intron 3 of 16) ERV3-16A3_I-int|LTR|ERVL 32394 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 434-69 chr12 124060475 124060760 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 87402 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 284-204 chr2 103847116 103847339 + 2 NA Intergenic L1MEd|LINE|L1 561105 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 260-134 chr14 77998391 77998583 + 2 NA Intergenic L1ME1|LINE|L1 -171886 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 157-28 chr11 103152439 103152550 + 2 NA intron (NM_001377, intron 21 of 88) intron (NM_001377, intron 21 of 88) 43068 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 472-63 chr12 64380157 64380439 + 2 NA intron (NM_001099676, intron 1 of 10) intron (NM_001099676, intron 1 of 10) 10460 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 371-307 chr5 38221445 38221630 + 2 NA Intergenic Intergenic -37022 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 225-257 chr4 175631770 175631945 + 2 NA Intergenic Intergenic 155819 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 314-51 chr1 241067083 241067314 + 2 NA intron (NM_001350116, intron 3 of 16) L2c|LINE|L2 -65074 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 571-187 chr9 31187773 31188145 + 2 NA Intergenic MIRb|SINE|MIR 193531 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 501-26 chr10 69368331 69368633 + 2 NA intron (NM_001322367, intron 4 of 16) intron (NM_001322367, intron 4 of 16) 48436 NM_001057 6865 Hs.88372 NM_001057 ENSG00000075073 TACR2 NK2R|NKNAR|SKR|TAC2R tachykinin receptor 2 protein-coding 776-24 chr2 81631604 81632377 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -165044 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 200-276 chr8 120665614 120665724 + 2 NA intron (NM_021021, intron 2 of 6) L1ME1|LINE|L1 -95584 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 760-79 chr9 118337842 118338534 + 2 NA Intergenic AluSg|SINE|Alu -341483 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 354-75 chr11 17621704 17622026 + 2 NA intron (NM_001277269, intron 38 of 54) L1ME1|LINE|L1 74492 NM_001292063 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 258-131 chr14 72864488 72864648 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 28081 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 545-31 chr10 111335496 111335895 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 221404 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 294-37 chr10 45515720 45515975 + 2 NA intron (NM_001282866, intron 2 of 7) intron (NM_001282866, intron 2 of 7) 19524 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 572-189 chr9 2442227 2442727 + 2 NA Intergenic AluSx1|SINE|Alu -179310 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 485-168 chr21 19910068 19910458 + 2 NA Intergenic Intergenic -10508 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 378-25 chr1 159107401 159107764 + 2 NA Intergenic L1PB1|LINE|L1 -30681 NM_001348247 9447 Hs.733411 NM_004833 ENSG00000163568 AIM2 PYHIN4 absent in melanoma 2 protein-coding 523-4 chr1 73859410 73859836 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 184944 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 207-266 chr7 24058003 24058129 + 2 NA Intergenic Intergenic -226124 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 406-214 chr4 134828155 134828543 + 2 NA Intergenic Intergenic 295210 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 401-114 chr16 12133853 12134109 + 2 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 157247 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 323-401 chr5 19729427 19729614 + 2 NA intron (NM_001349559, intron 4 of 12) intron (NM_001349559, intron 4 of 12) 156752 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 387-269 chr5 19339691 19339938 + 2 NA Intergenic L1PA11|LINE|L1 546458 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 266-287 chr4 65680450 65680654 + 2 NA intron (NR_034138, intron 2 of 3) intron (NR_034138, intron 2 of 3) -10057 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 330-557 chr9 92481443 92481717 + 2 NA intron (NM_017680, intron 1 of 8) intron (NM_017680, intron 1 of 8) 926 NM_001193335 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 246-134 chr15 85840845 85840993 + 2 NA Intergenic Intergenic 15284 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 502-96 chr15 51438893 51439246 + 2 NA Intergenic L1MA1|LINE|L1 61823 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 638-33 chr13 32468004 32468611 + 2 NA intron (NM_001320836, intron 6 of 9) L2|LINE|L2 30185 NR_051980 100462953 Hs.687692 NR_051980 MICOS10P1 CG012|MINOS1P1|N4BP2L2-IT|N4BP2L2-IT1|N4BP2L2IT1 MICOS10 pseudogene 1 pseudo 303-94 chr12 41989636 41989862 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 155125 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 608-8 chr1 192172912 192173342 + 2 NA intron (NM_130782, intron 3 of 4) intron (NM_130782, intron 3 of 4) 14665 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 207-141 chr2 66012050 66012222 + 2 NA Intergenic MIR3|SINE|MIR 346192 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 205-24 chr1 242733446 242733612 + 2 NA Intergenic L1MD1|LINE|L1 -208832 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 323-162 chr15 39388077 39388373 + 2 NA Intergenic Intergenic 137556 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 595-9 chr1 164691463 164691900 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 82960 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 200-271 chr8 104596905 104597058 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger -7957 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 333-130 chr13 38559238 38559427 + 2 NA intron (NR_126377, intron 2 of 2) intron (NR_126377, intron 2 of 2) -8392 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 527-200 chr5 9044295 9044729 + 2 NA exon (NM_003966, exon 22 of 23) exon (NM_003966, exon 22 of 23) 9383 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 371-177 chr2 107106469 107106704 + 2 NA Intergenic Intergenic -219477 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 243-123 chr14 50761736 50761929 + 2 NA exon (NM_020921, exon 16 of 31) exon (NM_020921, exon 16 of 31) -59965 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 382-69 chr11 116259546 116259764 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -379767 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 478-39 chr11 8279145 8279560 + 2 NA Intergenic Intergenic -10565 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 295-370 chr5 11063478 11063708 + 2 NA intron (NM_001288715, intron 15 of 20) Charlie2b|DNA|hAT-Charlie -302359 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 413-250 chr5 152849136 152849368 + 2 NA intron (NR_109877, intron 2 of 4) L1MC1|LINE|L1 123097 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 402-277 chr5 89665131 89665335 + 2 NA Intergenic HAL1M8|LINE|L1 351487 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 415-235 chr6 65394222 65394577 + 2 NA intron (NM_198283, intron 6 of 9) intron (NM_198283, intron 6 of 9) 92981 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 566-163 chr5 172592762 172593301 + 2 NA Intergenic L2c|LINE|L2 -34017 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 268-356 chr6 144577874 144578033 + 2 NA intron (NM_007124, intron 50 of 73) AluSx|SINE|Alu 172298 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 253-139 chr14 100739953 100740144 + 2 NA Intergenic Intergenic 13156 NM_001317172 8788 Hs.116631 NM_003836 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta like non-canonical Notch ligand 1 protein-coding 392-270 chr6 11516757 11516986 + 2 NA Intergenic Intergenic -20878 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 467-103 chr17 47785754 47786072 + 2 NA Intergenic Intergenic 35881 NM_145798 114881 Hs.463320 NM_017731 ENSG00000006025 OSBPL7 ORP7 oxysterol binding protein like 7 protein-coding 244-329 chr6 123501856 123502071 + 2 NA 3' UTR (NM_001256021, exon 8 of 8) 3' UTR (NM_001256021, exon 8 of 8) 62359 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 278-157 chr17 34029633 34029834 + 2 NA intron (NM_001094, intron 1 of 9) MLT1A|LTR|ERVL-MaLR 127073 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 180-120 chr4 136805968 136806086 + 2 NA intron (NR_149105, intron 3 of 3) LTR77|LTR|ERV1 -387729 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 413-28 chr10 6294464 6294720 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -31952 NR_040079 399715 NR_040079 ENSG00000215244 LINC02649 - long intergenic non-protein coding RNA 2649 ncRNA 295-335 chr4 57394796 57395039 + 2 NA Intergenic Intergenic -30955 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 500-274 chr7 62992024 62992385 + 2 NA Intergenic ALR/Alpha|Satellite|centr 311852 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 455-17 chr1 218042972 218043391 + 2 NA promoter-TSS (NR_110794) promoter-TSS (NR_110794) -324 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 252-4 chr1 36006680 36006838 + 2 NA intron (NM_177422, intron 4 of 16) intron (NM_177422, intron 4 of 16) 75654 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 349-134 chr12 82983673 82983875 + 2 NA intron (NM_152588, intron 7 of 11) intron (NM_152588, intron 7 of 11) 296619 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 186-36 chr12 66177077 66177205 + 2 NA Intergenic Intergenic -7069 NM_001282609 51643 Hs.505934 NM_016056 ENSG00000155957 TMBIM4 CGI-119|GAAP|LFG4|S1R|ZPRO transmembrane BAX inhibitor motif containing 4 protein-coding 589-70 chr2 103725818 103726143 + 2 NA Intergenic L1PA15|LINE|L1 682352 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 168-10 chr10 37831321 37831451 + 2 NA 3' UTR (NM_001352470, exon 6 of 6) 3' UTR (NM_001352470, exon 6 of 6) 26224 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 405-330 chr8 116298627 116299004 + 2 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 26244 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 265-239 chr3 51291144 51291357 + 2 NA intron (NM_004947, intron 27 of 52) L1PA5|LINE|L1 -94041 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 283-299 chr3 127884795 127884990 + 2 NA Intergenic Intergenic -30340 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 289-377 chr5 96136700 96136902 + 2 NA intron (NR_130776, intron 1 of 4) L1MC3|LINE|L1 57663 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 438-145 chr20 24166227 24166609 + 2 NA Intergenic MER31A|LTR|ERV1 -33349 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 333-234 chr2 47159876 47160164 + 2 NA TTS (NM_001305624) TTS (NM_001305624) -4712 NM_173649 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 497-270 chr7 109582705 109583148 + 2 NA Intergenic (ATAACTT)n|Simple_repeat|Simple_repeat 377287 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 189-46 chr12 130027204 130027339 + 2 NA Intergenic Intergenic 15071 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 438-180 chr3 157044432 157044685 + 2 NA intron (NM_001004316, intron 12 of 12) intron (NM_001004316, intron 12 of 12) -37283 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 165-130 chr8 73228596 73228700 + 2 NA Intergenic L2|LINE|L2 30854 NM_001243237 100130301 Hs.202296 NM_001243237 ENSG00000274443 C8orf89 - chromosome 8 open reading frame 89 protein-coding 444-156 chr3 113306848 113307191 + 2 NA intron (NM_001164496, intron 29 of 34) intron (NM_001164496, intron 29 of 34) 94903 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 306-326 chr3 126097922 126098181 + 2 NA intron (NM_001164475, intron 1 of 9) intron (NM_001164475, intron 1 of 9) 3497 NM_001164475 54946 Hs.573007 NM_017836 ENSG00000114544 SLC41A3 SLC41A1-L2 solute carrier family 41 member 3 protein-coding 393-234 chr3 194947611 194947886 + 2 NA Intergenic Intergenic -146840 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 547-170 chr4 158635378 158635706 + 2 NA intron (NR_045581, intron 12 of 17) L1MB3|LINE|L1 36345 NM_001008393 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 423-222 chr5 52376077 52376387 + 2 NA Intergenic MIR|SINE|MIR 368201 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 209-53 chr11 13360437 13360610 + 2 NA intron (NM_001351822, intron 8 of 18) intron (NM_001351822, intron 8 of 18) 79756 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 321-516 chr7 16387307 16387592 + 2 NA intron (NM_001101426, intron 2 of 9) L1M4b|LINE|L1 34089 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 207-112 chr18 55768814 55768996 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 11516 NR_145453 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 309-400 chr4 82196581 82196834 + 2 NA Intergenic L1ME3A|LINE|L1 177284 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 524-84 chr16 71751618 71751940 + 2 NA intron (NM_001128, intron 13 of 22) L1MC|LINE|L1 6708 NR_003059 692111 NR_003059 ENSG00000223224 SNORD71 HBII-239|MIRN768|hsa-mir-768 small nucleolar RNA, C/D box 71 snoRNA 407-258 chr5 124981712 124981983 + 2 NA Intergenic AluJo|SINE|Alu -54984 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 253-352 chr6 41947455 41947633 + 2 NA intron (NM_001136017, intron 1 of 4) L2a|LINE|L2 -5696 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 519-106 chr2 76044232 76044590 + 2 NA Intergenic L1M5|LINE|L1 -333496 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 384-355 chr7 109493895 109494235 + 2 NA Intergenic Intergenic 466148 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 219-116 chr15 70705157 70705313 + 2 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) -2953 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 264-255 chr21 33877499 33877666 + 2 NA intron (NM_001331010, intron 33 of 38) L1MEd|LINE|L1 38222 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 477-10 chr1 69004847 69005199 + 2 NA Intergenic L1PREC2|LINE|L1 -50875 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 490-38 chr10 43838701 43839004 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -6454 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 331-161 chr14 66367906 66368120 + 2 NA Intergenic Intergenic -118358 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 178-50 chr16 18011327 18011494 + 2 NA Intergenic Intergenic 321252 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 336-11 chr1 42401861 42402112 + 2 NA intron (NM_173642, intron 2 of 4) intron (NM_173642, intron 2 of 4) 21194 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 283-71 chr11 11921742 11921935 + 2 NA intron (NM_001282659, intron 10 of 27) intron (NM_001282659, intron 10 of 27) 80415 NM_017944 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 203-73 chr15 46586998 46587161 + 2 NA Intergenic L1M2|LINE|L1 -597010 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 571-161 chr8 24148218 24148603 + 2 NA Intergenic L1M4|LINE|L1 -145630 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 252-358 chr6 35549537 35549710 + 2 NA Intergenic AluJb|SINE|Alu -36727 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 320-594 chr9 86549112 86549389 + 2 NA Intergenic Intergenic -194840 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 217-3 chr1 30629138 30629312 + 2 NA Intergenic Intergenic -89547 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 214-264 chr5 82594004 82594196 + 2 NA Intergenic Intergenic -246055 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 343-269 chr2 125903084 125903308 + 2 NA Intergenic Intergenic 214789 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 387-89 chr12 119507223 119507545 + 2 NA intron (NM_178499, intron 7 of 13) intron (NM_178499, intron 7 of 13) -86390 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 497-247 chr6 61963137 61963474 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 322920 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 634-96 chr22 29127277 29127793 + 2 NA intron (NM_001039570, intron 5 of 8) AluSx|SINE|Alu 54500 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 452-173 chr3 101913897 101914169 + 2 NA Intergenic L1ME3A|LINE|L1 -26826 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 231-374 chr9 11651103 11651315 + 2 NA Intergenic (ATATTC)n|Simple_repeat|Simple_repeat 1038003 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 338-202 chr16 72791228 72791492 + 2 NA intron (NM_001164766, intron 8 of 8) intron (NM_001164766, intron 8 of 8) -126390 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 371-87 chr12 118551099 118551362 + 2 NA Intergenic MER112|DNA|hAT-Charlie 174675 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 258-393 chr8 91198039 91198293 + 2 NA intron (NR_148895, intron 8 of 10) intron (NR_148895, intron 8 of 10) -7319 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 326-204 chr18 4533070 4533351 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -77903 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 151-43 chr2 225095866 225095975 + 2 NA Intergenic Intergenic -53452 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 315-281 chr20 53353823 53354026 + 2 NA intron (NM_173485, intron 2 of 2) MER81|DNA|hAT-Blackjack 168641 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 316-355 chr3 94763512 94763793 + 2 NA Intergenic (TATTG)n|Simple_repeat|Simple_repeat -174611 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 338-328 chr3 41600081 41600279 + 2 NA intron (NR_136342, intron 29 of 34) intron (NR_136342, intron 29 of 34) 361923 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 506-149 chr2 82122403 82122757 + 2 NA Intergenic MIR|SINE|MIR -655634 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 420-307 chr9 35416009 35416363 + 2 NA intron (NR_003582, intron 2 of 10) L1PB3|LINE|L1 9431 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 371-131 chr16 56033682 56033995 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -77807 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 297-268 chr20 54675090 54675376 + 2 NA Intergenic Intergenic 199640 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 325-273 chr2 106782820 106783046 + 2 NA Intergenic Intergenic 103095 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 363-204 chr2 22581874 22582191 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 45553 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 255-96 chr13 94544926 94545160 + 2 NA intron (NM_001322186, intron 1 of 9) intron (NM_001322186, intron 1 of 9) 4363 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 238-197 chr2 214945582 214945804 + 2 NA intron (NR_103740, intron 50 of 54) intron (NR_103740, intron 50 of 54) 86393 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 342-293 chr20 57955667 57955867 + 2 NA Intergenic L2b|LINE|L2 -48137 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 346-282 chr21 25439536 25439734 + 2 NA Intergenic AluSc8|SINE|Alu -7934 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 523-21 chr1 232750721 232751085 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -8188 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 363-346 chr5 5621208 5621473 + 2 NA Intergenic Intergenic 198663 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 756-37 chr22 48004725 48005307 + 2 NA Intergenic Intergenic -269348 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 224-18 chr1 192283461 192283643 + 2 NA Intergenic L2b|LINE|L2 -33440 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 356-196 chr17 63513524 63513803 + 2 NA Intergenic Intergenic -9695 NM_001278920 81033 Hs.591177 NM_030779 ENSG00000173826 KCNH6 ERG-2|ERG2|HERG2|Kv11.2|hERG-2 potassium voltage-gated channel subfamily H member 6 protein-coding 325-230 chr17 71999037 71999288 + 2 NA Intergenic AluJo|SINE|Alu 26817 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 526-228 chr7 48474285 48474651 + 2 NA intron (NM_152701, intron 45 of 61) LTR48B|LTR|ERV1 303010 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 236-74 chr11 107532639 107532843 + 2 NA intron (NM_138775, intron 7 of 11) MIR|SINE|MIR 32994 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 208-259 chr8 54348900 54349042 + 2 NA Intergenic Intergenic 18285 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 245-34 chr10 25033929 25034051 + 2 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 17378 NM_024838 79896 Hs.645274 NM_024838 ENSG00000185875 THNSL1 TSH1 threonine synthase like 1 protein-coding 447-126 chr2 73364075 73364507 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -21467 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 293-353 chr5 130007409 130007648 + 2 NA intron (NM_175856, intron 2 of 2) L1PA15|LINE|L1 103063 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 505-33 chr10 81656505 81656872 + 2 NA Intergenic L1MA8|LINE|L1 -218506 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 474-20 chr1 194642016 194642324 + 2 NA Intergenic L1PA15|LINE|L1 1337425 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 245-262 chr4 119491607 119491796 + 2 NA intron (NR_037630, intron 5 of 8) L1MA6|LINE|L1 36918 NR_037630 645513 Hs.677546 NR_037630 ENSG00000245958 LOC645513 - septin 7 pseudogene pseudo 123-65 chr9 130147071 130147157 + 2 NA Intergenic L1MB8|LINE|L1 -2895 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 367-205 chr2 82238088 82238306 + 2 NA Intergenic Intergenic -618606 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 266-152 chr18 4426286 4426495 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 28876 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 266-300 chr4 101333908 101334092 + 2 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) -3586 NR_031656 100302193 NR_031656 ENSG00000221265 MIR1255A MIRN1255A|hsa-mir-1255a microRNA 1255a ncRNA 218-283 chr6 20316566 20316771 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -85211 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 325-587 chrX 97414253 97414494 + 2 NA intron (NM_007309, intron 25 of 26) AluY|SINE|Alu 150162 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 326-564 chr8 141803614 141803929 + 2 NA Intergenic L1MC3|LINE|L1 -17458 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 350-412 chr5 123996031 123996240 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 442385 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 347-318 chr3 123878001 123878292 + 2 NA intron (NM_001321309, intron 1 of 32) L2b|LINE|L2 6186 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 638-62 chr2 4641039 4641608 + 2 NA intron (NR_034134, intron 3 of 4) intron (NR_034134, intron 3 of 4) 14899 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 318-197 chr16 59400253 59400553 + 2 NA Intergenic Intergenic 354788 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 331-416 chr5 44373571 44373775 + 2 NA intron (NM_004465, intron 1 of 2) MLT1D-int|LTR|ERVL-MaLR -15059 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 179-93 chr5 43269359 43269523 + 2 NA intron (NR_072980, intron 2 of 3) L1PB3|LINE|L1 43740 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 253-370 chr6 169513900 169514101 + 2 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 188029 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 190-130 chr3 192122654 192122785 + 2 NA Intergenic Intergenic -115911 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 325-254 chr2 21736620 21736907 + 2 NA Intergenic Intergenic -26111 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 403-275 chr6 160168763 160169117 + 2 NA Intergenic Intergenic 47109 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 212-329 chr8 118298805 118299002 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -187084 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 505-170 chr20 95851 96169 + 2 NA exon (NM_153325, exon 2 of 2) exon (NM_153325, exon 2 of 2) 8338 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 421-249 chr5 148705419 148705759 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -51062 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 474-255 chr6 74713473 74713761 + 2 NA Intergenic Intergenic 415165 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 301-358 chr5 83611034 83611320 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -48863 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 530-277 chr9 96434282 96434712 + 2 NA Intergenic AluSq2|SINE|Alu -15672 NM_014282 22927 Hs.494567 NM_014282 ENSG00000130956 HABP4 IHABP-4|IHABP4|Ki-1/57|SERBP1L hyaluronan binding protein 4 protein-coding 328-493 chr6 40572661 40572853 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 14607 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 391-369 chr8 131601707 131601983 + 2 NA Intergenic Intergenic -302248 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 359-468 chr8 62090840 62091042 + 2 NA Intergenic Intergenic -157913 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 261-185 chr2 69397107 69397308 + 2 NA intron (NR_045632, intron 5 of 5) intron (NR_045632, intron 5 of 5) -9953 NM_001244710 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 371-108 chr14 63592614 63592934 + 2 NA Intergenic L1M5|LINE|L1 49097 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 323-526 chr8 16258059 16258258 + 2 NA Intergenic L1MEd|LINE|L1 -65367 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 335-399 chr4 151915127 151915354 + 2 NA Intergenic Intergenic -154217 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 254-115 chr14 60536222 60536471 + 2 NA Intergenic Intergenic 27200 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 532-2 chr1 66181261 66181624 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -130724 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 130-6 chr1 169979974 169980053 + 2 NA intron (NM_014970, intron 15 of 19) L1ME3A|LINE|L1 -86054 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 245-22 chr1 199220247 199220437 + 2 NA intron (NR_147896, intron 3 of 3) L1M2a|LINE|L1 71744 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 595-143 chr6 56318236 56318613 + 2 NA intron (NM_001318752, intron 1 of 28) L2a|LINE|L2 -70844 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 233-332 chr6 57025016 57025217 + 2 NA intron (NM_152731, intron 6 of 6) L1M3f|LINE|L1 -21416 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 489-152 chr2 194000647 194000975 + 2 NA Intergenic L1MD|LINE|L1 -343458 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 279-280 chr3 180667350 180667565 + 2 NA intron (NM_181426, intron 1 of 19) Tigger1|DNA|TcMar-Tigger 12032 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 246-44 chr10 53607166 53607336 + 2 NA Intergenic L3b|LINE|CR1 -835551 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 280-37 chr1 239495942 239496153 + 2 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) 109479 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 904-19 chr17 34818283 34818972 + 2 NA Intergenic L2a|LINE|L2 142833 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 355-476 chr7 92109844 92110172 + 2 NA intron (NM_147185, intron 49 of 49) intron (NM_147185, intron 49 of 49) 24469 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 922-32 chr7 5109457 5110169 + 2 NA Intergenic AluJr|SINE|Alu 34733 NR_034163 645700 Hs.690815 NR_034163 ENSG00000159904 ZNF890P - zinc finger protein 890, pseudogene pseudo 436-247 chr5 102762928 102763283 + 2 NA intron (NR_157231, intron 1 of 14) intron (NR_157231, intron 1 of 14) 7800 NR_157231 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 322-298 chr20 56999395 56999656 + 2 NA Intergenic AluJr|SINE|Alu -214171 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 319-215 chr19 29257981 29258191 + 2 NA Intergenic L1ME1|LINE|L1 -44935 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 240-357 chr5 109672894 109673057 + 2 NA Intergenic MER3|DNA|hAT-Charlie -16391 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 206-258 chr8 19879560 19879687 + 2 NA Intergenic Intergenic -59630 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 197-46 chr12 14714927 14715053 + 2 NA Intergenic Intergenic -18391 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 278-353 chr5 136379927 136380083 + 2 NA Intergenic L1MC5a|LINE|L1 -14529 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 326-486 chr7 14743708 14743924 + 2 NA intron (NM_001350724, intron 3 of 24) MER41-int|LTR|ERV1 97634 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 330-525 chr8 105205245 105205417 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -113107 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 253-424 chr9 4133927 4134143 + 2 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 18148 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 334-274 chr2 103067007 103067194 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie -82671 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 233-158 chr2 23328998 23329122 + 2 NA Intergenic Intergenic -56119 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 197-206 chr8 111640908 111641065 + 2 NA Intergenic L1MA9|LINE|L1 264347 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 437-102 chr17 18628140 18628412 + 2 NA Intergenic Intergenic -2659 NR_036647 284047 Hs.448012 NR_036647 ENSG00000154874 CCDC144B - coiled-coil domain containing 144B (pseudogene) pseudo 347-128 chr14 49451355 49451662 + 2 NA Intergenic Intergenic 134872 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 297-33 chr1 222598618 222598785 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 8742 NR_110614 100506161 Hs.553851 NR_110613 ENSG00000225265 TAF1A-AS1 - TAF1A antisense RNA 1 ncRNA 161-113 chr8 25096452 25096576 + 2 NA Intergenic (AGAAAT)n|Simple_repeat|Simple_repeat -88175 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 232-67 chr12 10620363 10620560 + 2 NA intron (NM_018423, intron 10 of 10) intron (NM_018423, intron 10 of 10) -6852 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 369-161 chr18 13037927 13038151 + 2 NA intron (NM_032142, intron 12 of 44) FLAM_C|SINE|Alu 46677 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 707-64 chr22 34866243 34866854 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 131368 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 181-140 chr6 62045176 62045278 + 2 NA intron (NR_146874, intron 3 of 13) L2|LINE|L2 240998 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 352-44 chr10 52973646 52973840 + 2 NA Intergenic LTR27D|LTR|ERV1 -202043 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 577-145 chr5 28278391 28278889 + 2 NA Intergenic AluSc|SINE|Alu 9025 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 610-3 chr1 70831351 70831772 + 2 NA Intergenic L1M4|LINE|L1 125108 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 274-263 chr3 99359926 99360123 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -278570 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 327-6 chr1 48684780 48684955 + 2 NA intron (NM_001323575, intron 6 of 12) intron (NM_001323575, intron 6 of 12) 92024 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 169-137 chr8 91596667 91596804 + 2 NA Intergenic Intergenic 347416 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 232-272 chr4 82014834 82015000 + 2 NA Intergenic AluSg|SINE|Alu 359074 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 384-269 chr4 90138467 90138737 + 2 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) 11069 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 637-114 chr8 21158866 21159374 + 2 NA Intergenic Intergenic -139119 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 569-61 chr14 79689720 79690246 + 2 NA intron (NM_004796, intron 14 of 16) intron (NM_004796, intron 14 of 16) 410603 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 480-219 chr4 91215047 91215376 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 980180 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 520-227 chr5 25562795 25563163 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 372026 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 483-49 chr12 87935394 87935768 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 93820 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 210-228 chr5 106067265 106067415 + 2 NA Intergenic L1MEf|LINE|L1 943674 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 289-56 chr10 54749314 54749498 + 2 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 51825 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 276-338 chr4 69868301 69868535 + 2 NA Intergenic ERVL-int|LTR|ERVL -8273 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 205-121 chr18 921384 921500 + 2 NA Intergenic Intergenic 6551 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 254-229 chr21 23527199 23527347 + 2 NA Intergenic Intergenic -142438 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 316-138 chr12 80755463 80755752 + 2 NA Intergenic L2a|LINE|L2 -7547 NR_120469 101928420 Hs.739989 NR_120468 ENSG00000257741 LINC01490 - long intergenic non-protein coding RNA 1490 ncRNA 347-193 chr19 56647413 56647707 + 2 NA exon (NM_001193628, exon 3 of 4) exon (NM_001193628, exon 3 of 4) 4401 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 327-469 chr7 97468946 97469190 + 2 NA Intergenic Intergenic -263018 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 188-13 chr10 8508391 8508513 + 2 NA Intergenic Intergenic 85939 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 462-248 chr6 40189070 40189449 + 2 NA Intergenic Intergenic 166747 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 227-305 chr6 33522566 33522750 + 2 NA Intergenic MER57B2|LTR|ERV1 57618 NM_001188 578 Hs.485139 NM_001188 ENSG00000030110 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2 antagonist/killer 1 protein-coding 328-386 chr4 25527387 25527589 + 2 NA Intergenic MER49|LTR|ERV1 41858 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 463-232 chr5 45143510 45143785 + 2 NA Intergenic L1PA15|LINE|L1 334700 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 496-253 chr7 21497039 21497456 + 2 NA intron (NM_003112, intron 5 of 5) L1M4|LINE|L1 26189 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 571-152 chr7 3470482 3470997 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 169487 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 241-331 chr6 61690162 61690397 + 2 NA intron (NR_146874, intron 8 of 13) intron (NR_146874, intron 8 of 13) 116149 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 345-432 chr5 110824894 110825195 + 2 NA Intergenic MER52-int|LTR|ERV1 86037 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 310-536 chr8 126044576 126044732 + 2 NA Intergenic L1PA15-16|LINE|L1 -93457 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 147-3 chr1 217775890 217776030 + 2 NA intron (NM_138796, intron 7 of 10) intron (NM_138796, intron 7 of 10) 9160 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 794-4 chr1 80737762 80738239 + 2 NA Intergenic L1MA3|LINE|L1 96713 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 259-228 chr20 2590885 2591105 + 2 NA intron (NM_080751, intron 7 of 19) L1ME4a|LINE|L1 54388 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 357-382 chr6 53598703 53598992 + 2 NA Intergenic Intergenic -25572 NR_110840 101927136 Hs.509788 NR_110840 ENSG00000231683 LOC101927136 - uncharacterized LOC101927136 ncRNA 300-400 chr6 123806198 123806446 + 2 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 2457 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 585-107 chr4 60305572 60305970 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -616848 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 739-47 chr3 34016314 34016871 + 2 NA Intergenic Intergenic 217962 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 381-365 chr7 98101181 98101372 + 2 NA Intergenic AluY|SINE|Alu -5586 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 258-119 chr14 43277909 43278141 + 2 NA Intergenic L1ME3F|LINE|L1 1229258 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 226-116 chr16 56095666 56095829 + 2 NA intron (NR_027078, intron 4 of 4) L1ME2|LINE|L1 95347 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 211-157 chr2 208861043 208861161 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 318460 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 656-18 chr10 16348966 16349429 + 2 NA Intergenic L2a|LINE|L2 -87746 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 321-217 chr16 60028833 60029151 + 2 NA intron (NR_110917, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat 173639 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 413-334 chrX 99967548 99967906 + 2 NA Intergenic L1M1|LINE|L1 442546 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 328-473 chr5 126093801 126093992 + 2 NA Intergenic L1ME3A|LINE|L1 -85681 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 224-126 chr18 65361275 65361424 + 2 NA Intergenic Intergenic -388903 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 395-40 chr10 67349109 67349479 + 2 NA intron (NM_001127384, intron 5 of 17) L1MB1|LINE|L1 54116 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 208-264 chr8 101592422 101592597 + 2 NA intron (NM_024915, intron 7 of 15) intron (NM_024915, intron 7 of 15) 100070 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 279-249 chr3 28215412 28215589 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -26119 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 271-193 chr2 36677762 36678023 + 2 NA Intergenic Intergenic -18798 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 274-408 chr9 7914224 7914443 + 2 NA Intergenic Intergenic -114555 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 747-68 chr8 103273759 103274321 + 2 NA intron (NR_148215, intron 2 of 3) AluJo|SINE|Alu -24454 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 243-225 chr2 119092139 119092354 + 2 NA Intergenic L1MEf|LINE|L1 66505 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 451-18 chr1 217320874 217321232 + 2 NA Intergenic Intergenic -183351 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 194-86 chr19 58149825 58149961 + 2 NA intron (NM_024620, intron 1 of 3) L1ME2z|LINE|L1 896 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 326 chr1 4285674 4285870 + 2 NA Intergenic LTR16C|LTR|ERVL -126279 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 300-433 chr7 54771424 54771693 + 2 NA intron (NR_110040, intron 1 of 2) L1ME2|LINE|L1 12245 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 335-293 chr20 33043226 33043436 + 2 NA exon (NM_174897, exon 14 of 15) exon (NM_174897, exon 14 of 15) 11683 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 428-173 chr3 31150117 31150502 + 2 NA Intergenic L1M1|LINE|L1 11478 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 348-528 chr8 111017637 111017886 + 2 NA intron (NR_125417, intron 1 of 5) intron (NR_125417, intron 1 of 5) 9672 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 279-298 chr4 102875156 102875386 + 2 NA intron (NM_001008388, intron 1 of 2) L2c|LINE|L2 6279 NM_001008388 493856 Hs.444955 NM_001008388 ENSG00000145354 CISD2 ERIS|Miner1|NAF-1|WFS2|ZCD2 CDGSH iron sulfur domain 2 protein-coding 636-70 chr2 57965906 57966342 + 2 NA intron (NM_001288838, intron 1 of 15) LTR40b|LTR|ERVL 58473 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 297-347 chr4 152658648 152658916 + 2 NA intron (NM_152680, intron 1 of 6) AluSx|SINE|Alu 21215 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 177-129 chr5 51243279 51243413 + 2 NA Intergenic Intergenic 139986 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 354-335 chr4 82728902 82729116 + 2 NA intron (NM_001037582, intron 1 of 4) L2c|LINE|L2 24421 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 380-163 chr18 42141331 42141542 + 2 NA Intergenic L1PA16|LINE|L1 -45232 NR_046456 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 407-40 chr10 112380238 112380481 + 2 NA intron (NM_016234, intron 1 of 20) intron (NM_016234, intron 1 of 20) 4161 NM_016234 51703 Hs.11638 NM_016234 ENSG00000197142 ACSL5 ACS2|ACS5|FACL5 acyl-CoA synthetase long chain family member 5 protein-coding 310-503 chr8 29478219 29478500 + 2 NA Intergenic Intergenic -127675 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 466-257 chr7 141134445 141134788 + 2 NA intron (NM_001195278, intron 1 of 3) L1MA4|LINE|L1 60552 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 341-203 chr18 5915737 5915918 + 2 NA Intergenic Intergenic -19873 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 379-3 chr1 32156436 32156678 + 2 NA intron (NM_012316, intron 2 of 13) Tigger7|DNA|TcMar-Tigger -23118 NM_175852 200081 Hs.17987 NM_175852 ENSG00000084652 TXLNA IL14|TXLN taxilin alpha protein-coding 158-44 chr18 75604288 75604423 + 2 NA Intergenic Intergenic 108048 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 264-82 chr11 114065066 114065308 + 2 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 1976 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 123-61 chr8 132791966 132792047 + 2 NA intron (NM_198513, intron 2 of 7) intron (NM_198513, intron 2 of 7) 16618 NM_016018 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 280-36 chr1 237576124 237576342 + 2 NA intron (NM_001035, intron 29 of 104) L1M5|LINE|L1 105114 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 371-118 chr15 56556484 56556817 + 2 NA Intergenic L1MB1|LINE|L1 -91513 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 350-449 chr6 130516855 130517094 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 79857 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 325-143 chr12 132996585 132996803 + 2 NA intron (NM_001330514, intron 2 of 4) L1M5|LINE|L1 10327 NM_019591 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 524-55 chr13 76497073 76497403 + 2 NA Intergenic L2c|LINE|L2 389167 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 284-451 chrX 38320304 38320493 + 2 NA intron (NM_001034853, intron 4 of 14) L1M5|LINE|L1 6554 NR_159808 6103 Hs.61438 NM_000328 ENSG00000156313 RPGR COD1|CORDX1|CRD|PCDX|RP15|RP3|XLRP3|orf15 retinitis pigmentosa GTPase regulator protein-coding 192-137 chr3 192485953 192486065 + 2 NA intron (NM_004113, intron 2 of 5) Charlie29a|DNA|hAT-Charlie -29013 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 242-200 chr2 153333726 153333909 + 2 NA Intergenic ORSL-2b|DNA|hAT-Tip100 144945 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 366-61 chr10 108148390 108148725 + 2 NA Intergenic L1MB8|LINE|L1 -79264 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 453-35 chr11 35541173 35541520 + 2 NA Intergenic Intergenic -11046 NM_001282675 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 400-373 chrX 48061152 48061428 + 2 NA intron (NM_001282202, intron 2 of 4) L1ME4b|LINE|L1 4980 NR_046742 100874120 Hs.618606 NR_046742 ZNF630-AS1 - ZNF630 antisense RNA 1 ncRNA 361-77 chr11 79839743 79840053 + 2 NA Intergenic Intergenic -398868 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 480-169 chr2 236396968 236397307 + 2 NA intron (NR_073043, intron 9 of 19) intron (NR_073043, intron 9 of 19) 106560 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 291-98 chr12 42059508 42059750 + 2 NA Intergenic HAL1|LINE|L1 85245 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 423-154 chr20 54333699 54334101 + 2 NA Intergenic Intergenic 125813 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 200-269 chr8 82362551 82362701 + 2 NA Intergenic Intergenic -520340 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 267-324 chr5 28424823 28425025 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -137259 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 285-461 chr9 88417113 88417365 + 2 NA intron (NM_006717, intron 1 of 5) intron (NM_006717, intron 1 of 5) 28795 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 286-72 chr11 76511959 76512128 + 2 NA intron (NM_001300942, intron 10 of 21) intron (NM_001300942, intron 10 of 21) 67018 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 338-17 chr1 98106410 98106604 + 2 NA Intergenic Intergenic -56814 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 228-2 chr1 38324717 38324880 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -110031 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 304-164 chr15 67262232 67262450 + 2 NA intron (NM_001322472, intron 2 of 13) intron (NM_001322472, intron 2 of 13) -7143 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 611-65 chr18 10996935 10997488 + 2 NA intron (NM_022068, intron 2 of 51) L1MEf|LINE|L1 151551 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 329-105 chr11 121364820 121365129 + 2 NA Intergenic Intergenic 72106 NM_001024956 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 266-68 chr11 84673822 84674042 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 47010 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 494-118 chr2 12331516 12332004 + 2 NA intron (NR_110196, intron 4 of 5) L1MA1|LINE|L1 132630 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 222-370 chr8 100683682 100683828 + 2 NA Intergenic Intergenic 19269 NR_106992 102466854 NR_106992 ENSG00000284570 MIR7705 hsa-mir-7705 microRNA 7705 ncRNA 366-359 chr5 155863964 155864299 + 2 NA Intergenic L2a|LINE|L2 -462626 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 470-257 chr7 94231871 94232277 + 2 NA Intergenic Intergenic 160118 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 209-132 chr18 7908114 7908286 + 2 NA intron (NM_002845, intron 4 of 30) L1ME3Cz|LINE|L1 340884 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 360-208 chr2 29366202 29366474 + 2 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) 109039 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 427-125 chr2 113862451 113862778 + 2 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -27320 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 559-207 chrX 75624886 75625341 + 2 NA Intergenic Intergenic -101611 NM_001146256 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 518-295 chr8 36940995 36941365 + 2 NA Intergenic L1MA5|LINE|L1 156806 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 316-446 chr5 94330012 94330312 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -218463 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 287-248 chr3 77329542 77329813 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 231665 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 190-40 chr12 62116737 62116886 + 2 NA intron (NM_178539, intron 1 of 4) MLT1B|LTR|ERVL-MaLR 76028 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 405-304 chr7 52916201 52916535 + 2 NA Intergenic L1MC1|LINE|L1 -119265 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 322-493 chr7 64520103 64520328 + 2 NA 3' UTR (NM_178558, exon 4 of 4) 3' UTR (NM_178558, exon 4 of 4) 42856 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 233-271 chr4 106876153 106876333 + 2 NA Intergenic Intergenic 160070 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 588-154 chr8 35266775 35267359 + 2 NA intron (NM_080872, intron 1 of 16) MLT1G|LTR|ERVL-MaLR 31592 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 329-274 chr2 63369673 63369898 + 2 NA intron (NM_001354045, intron 12 of 12) intron (NM_001354045, intron 12 of 12) 68222 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 344-162 chr15 92035416 92035651 + 2 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 181229 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 512-58 chr11 129186286 129186718 + 2 NA intron (NM_001142685, intron 1 of 21) intron (NM_001142685, intron 1 of 21) 5696 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 260-166 chr16 80177876 80178069 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -362762 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 356-323 chr3 62486682 62486878 + 2 NA intron (NM_003716, intron 21 of 29) MER66B|LTR|ERV1 -113230 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 194-16 chr1 213890409 213890566 + 2 NA intron (NR_037850, intron 4 of 5) L2c|LINE|L2 -34262 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 346-441 chr6 127627753 127628012 + 2 NA Intergenic L1M4|LINE|L1 50708 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 347-281 chr21 17944454 17944634 + 2 NA intron (NM_001204177, intron 1 of 4) L1M3b|LINE|L1 27204 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 249-396 chr7 129296776 129296965 + 2 NA intron (NM_001130720, intron 1 of 16) intron (NM_001130720, intron 1 of 16) -71510 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 621-51 chr2 4401008 4401410 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 255013 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 370-126 chr13 28920196 28920396 + 2 NA intron (NM_001366651, intron 2 of 14) L1MA3|LINE|L1 99957 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 203-146 chr3 55170328 55170438 + 2 NA Intergenic Intergenic -7789 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 661-13 chr11 65395401 65395895 + 2 NA intron (NM_001300832, intron 5 of 9) intron (NM_001300832, intron 5 of 9) 9011 NM_031904 83786 Hs.578433 NM_031904 ENSG00000126391 FRMD8 FKSG44|iTAP FERM domain containing 8 protein-coding 350-346 chr4 54312216 54312476 + 2 NA Intergenic Intergenic -20546 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 419-49 chr11 23402922 23403269 + 2 NA Intergenic Intergenic 16095 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 403-339 chrX 95619562 95619894 + 2 NA Intergenic LTR49-int|LTR|ERV1 -556502 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 511-144 chr20 17402088 17402491 + 2 NA intron (NM_002594, intron 5 of 11) intron (NM_002594, intron 5 of 11) 129090 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 366-282 chr3 109577190 109577520 + 2 NA Intergenic L1ME1|LINE|L1 -25473 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 192-82 chr17 11049266 11049446 + 2 NA Intergenic Intergenic -191857 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 326-73 chr10 69848366 69848591 + 2 NA intron (NM_001368898, intron 3 of 33) MIRb|SINE|MIR 46572 NM_001368897 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 568-107 chr2 76149300 76149703 + 2 NA Intergenic Intergenic -438586 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 259-24 chr1 192876121 192876283 + 2 NA Intergenic Intergenic 67163 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 1186-7 chr13 102510951 102511827 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -85597 NM_001330588 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 403-260 chr5 133491038 133491433 + 2 NA intron (NM_015082, intron 3 of 15) L1MEd|LINE|L1 -63529 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 597-73 chr2 106004534 106004992 + 2 NA Intergenic L1MB8|LINE|L1 -60925 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 175-90 chr2 223701145 223701278 + 2 NA Intergenic Intergenic -98850 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 193-41 chr11 94920933 94921109 + 2 NA Intergenic L2c|LINE|L2 52535 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 348-231 chr2 103777099 103777323 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 631121 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 550-110 chr2 50414633 50415058 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -67089 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 352-473 chr6 155085367 155085580 + 2 NA Intergenic Intergenic -4816 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 232-275 chr4 103563051 103563228 + 2 NA Intergenic L1MEg|LINE|L1 138097 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 546-223 chr7 56240476 56240858 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -124250 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 212-168 chr2 121573714 121573898 + 2 NA intron (NM_015282, intron 2 of 38) L1MD2|LINE|L1 42926 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 517-199 chr4 92260803 92261248 + 2 NA Intergenic L2a|LINE|L2 16277 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 319-233 chr2 29648402 29648570 + 2 NA intron (NM_004304, intron 3 of 28) L1MB3|LINE|L1 -173109 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 967-28 chr8 82879750 82880408 + 2 NA Intergenic Intergenic -32025 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 185-211 chr9 34875438 34875606 + 2 NA Intergenic MER112|DNA|hAT-Charlie 20242 NM_001309427 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 238-116 chr15 70742558 70742742 + 2 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) 20908 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 488-126 chr2 16252538 16252943 + 2 NA Intergenic Intergenic 202313 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 279-103 chr14 47814635 47814850 + 2 NA Intergenic L1PB1|LINE|L1 -19728 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 238-222 chr22 33303022 33303175 + 2 NA intron (NM_133642, intron 12 of 14) intron (NM_133642, intron 12 of 14) 133571 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 386-116 chr15 62073829 62074169 + 2 NA Intergenic L1MCb|LINE|L1 7022 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 448-261 chr7 63961009 63961375 + 2 NA Intergenic L1MEd|LINE|L1 -37614 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 483-234 chr7 622085 622479 + 2 NA intron (NM_001164760, intron 4 of 10) intron (NM_001164760, intron 4 of 10) 18884 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 508-46 chr11 122844611 122844960 + 2 NA intron (NM_019604, intron 1 of 9) intron (NM_019604, intron 1 of 9) 6285 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 226-288 chr5 104713622 104713802 + 2 NA Intergenic Intergenic -385762 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 508-185 chr5 28245276 28245644 + 2 NA Intergenic L1MC4|LINE|L1 42205 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 295-48 chr10 73090632 73090804 + 2 NA intron (NM_001142595, intron 1 of 15) intron (NM_001142595, intron 1 of 15) 6256 NM_001017962 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 250-243 chr20 44505907 44506066 + 2 NA intron (NM_006811, intron 6 of 9) intron (NM_006811, intron 6 of 9) 16084 NM_006811 10955 Hs.272168 NM_006811 ENSG00000132824 SERINC3 AIGP1|DIFF33|SBBI99|TDE|TDE1|TMS-1 serine incorporator 3 protein-coding 381-342 chr6 144396684 144396928 + 2 NA intron (NM_007124, intron 1 of 73) MIRc|SINE|MIR -8849 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 287-430 chr9 27317068 27317344 + 2 NA Intergenic Intergenic -20056 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 526-3 chr1 77517793 77518088 + 2 NA intron (NM_012093, intron 10 of 13) L1MC4|LINE|L1 164718 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 476-82 chr14 58475647 58476052 + 2 NA intron (NM_001329944, intron 19 of 31) AluSx|SINE|Alu 36168 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 453-219 chr5 171095600 171095956 + 2 NA intron (NM_022897, intron 14 of 27) Tigger2|DNA|TcMar-Tigger -213470 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 358-222 chr2 98528055 98528351 + 2 NA intron (NM_001351428, intron 4 of 24) L1MB7|LINE|L1 80309 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 323-359 chr4 30604682 30604940 + 2 NA Intergenic Intergenic -115558 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 428-9 chr1 157886607 157886982 + 2 NA Intergenic Intergenic -39173 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 531-23 chr10 56948351 56948867 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 355950 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 252-145 chr16 55686936 55687171 + 2 NA intron (NM_001172504, intron 4 of 13) intron (NM_001172504, intron 4 of 13) 15382 NM_001172502 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 385-170 chr2 43793434 43793767 + 2 NA intron (NM_016008, intron 5 of 12) L1MB3|LINE|L1 19561 NM_016008 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 273-461 chr8 134984099 134984297 + 2 NA Intergenic L1MEd|LINE|L1 134263 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 680-31 chr13 76924195 76924593 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -4057 NR_026983 690 Hs.567241 NR_026983 BTF3P11 BTF3L1|HUMBTFB|OCIF|OPG|TNFRSF11B basic transcription factor 3 pseudogene 11 pseudo 206-260 chr8 50244329 50244522 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 80294 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 300-62 chr11 24469587 24469809 + 2 NA Intergenic L1MA9|LINE|L1 -27355 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 339-307 chr20 11082932 11083172 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 56508 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 490-189 chr3 189460391 189460770 + 2 NA Intergenic LTR81B|LTR|Gypsy -136166 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 182-16 chr1 237224234 237224403 + 2 NA intron (NM_001035, intron 1 of 104) Tigger2b_Pri|DNA|TcMar-Tigger 182134 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 258-221 chr2 240206471 240206703 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -65929 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 233-100 chr14 68367510 68367692 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 261186 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 314-418 chr4 45235874 45236093 + 2 NA Intergenic L1MCb|LINE|L1 -509349 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 368-474 chr9 8330510 8330770 + 2 NA intron (NM_130392, intron 29 of 30) intron (NM_130392, intron 29 of 30) 403306 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 327-348 chr3 180231033 180231204 + 2 NA Intergenic MER61-int|LTR|ERV1 -183055 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 388-100 chr14 23680968 23681173 + 2 NA Intergenic L1MCc|LINE|L1 44706 NM_182908 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 443-155 chr2 176723825 176724197 + 2 NA Intergenic Intergenic 86257 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 112-31 chr22 25627546 25627644 + 2 NA intron (NM_001362778, intron 2 of 19) intron (NM_001362778, intron 2 of 19) 62920 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 430-55 chr11 74112311 74112669 + 2 NA intron (NM_001286577, intron 11 of 32) L1MB7|LINE|L1 58512 NM_015531 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 domain containing 3 centriole elongation regulator protein-coding 371-299 chr5 6154474 6154777 + 2 NA Intergenic Intergenic 182667 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 131-84 chr9 114701168 114701255 + 2 NA Intergenic Intergenic -19122 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 221-228 chr4 183168509 183168684 + 2 NA intron (NM_024949, intron 1 of 22) intron (NM_024949, intron 1 of 22) 69339 NM_024949 80014 Hs.333179 NM_024949 ENSG00000151718 WWC2 BOMB WW and C2 domain containing 2 protein-coding 270-332 chr6 53224419 53224648 + 2 NA Intergenic L1MEj|LINE|L1 -52460 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 340-522 chr8 32952851 32953163 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 231172 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 241-389 chr8 49032580 49032750 + 2 NA Intergenic Intergenic -21671 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 352-286 chr20 53423261 53423476 + 2 NA intron (NM_173485, intron 2 of 2) AluSz|SINE|Alu -129402 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 363-231 chr2 158193469 158193762 + 2 NA intron (NM_138803, intron 11 of 13) intron (NM_138803, intron 11 of 13) 26965 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 332-588 chrX 66448939 66449132 + 2 NA Intergenic L1ME3|LINE|L1 166995 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 589-53 chr19 28790864 28791262 + 2 NA Intergenic Intergenic -63369 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 374-292 chr5 3087182 3087495 + 2 NA Intergenic L1MB2|LINE|L1 -90497 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 557-191 chr7 152751232 152751712 + 2 NA Intergenic Intergenic -8277 NR_146947 57180 Hs.647117 NM_020445 ENSG00000133627 ACTR3B ARP11|ARP3BETA actin related protein 3B protein-coding 443-242 chr5 40351165 40351410 + 2 NA Intergenic L1MA2|LINE|L1 298996 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 334-260 chr2 59710262 59710480 + 2 NA Intergenic L1ME3Cz|LINE|L1 492663 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 521-78 chr14 22293242 22293740 + 2 NA Intergenic Intergenic 139262 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 251-90 chr14 42494636 42494868 + 2 NA Intergenic LTR37B|LTR|ERV1 887896 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 334-374 chr4 38292348 38292597 + 2 NA Intergenic Intergenic -74442 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 551-51 chr14 62012645 62013055 + 2 NA intron (NM_001367661, intron 4 of 8) MamGypsy2-I|LTR|Gypsy 85155 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 316-609 chrX 88901914 88902182 + 2 NA Intergenic L1MA7|LINE|L1 154823 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 328-477 chr5 148598575 148598835 + 2 NA intron (NM_001040172, intron 1 of 5) L2a|LINE|L2 38356 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 168 chr1 43191952 43192099 + 2 NA intron (NM_001195831, intron 6 of 23) L1MB7|LINE|L1 -19455 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 267-3 chr1 29864143 29864364 + 2 NA Intergenic L1MC3|LINE|L1 173359 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 304-567 chrX 64562876 64563130 + 2 NA Intergenic L1ME3G|LINE|L1 -167551 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 349-227 chr19 37671108 37671398 + 2 NA intron (NM_152605, intron 3 of 3) L1M5|LINE|L1 -14992 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 489-176 chr3 94063561 94063973 + 2 NA promoter-TSS (NM_001195643) promoter-TSS (NM_001195643) 706 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 191-73 chr17 14796959 14797083 + 2 NA Intergenic Intergenic -217784 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 212-93 chr13 60849312 60849489 + 2 NA Intergenic Intergenic 176445 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 322-356 chr3 166951369 166951549 + 2 NA Intergenic L1PBa|LINE|L1 52776 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 395-300 chr6 161530655 161531007 + 2 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) 59854 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 419-47 chr11 21316563 21316961 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 647176 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 421-246 chr5 97980634 97980937 + 2 NA Intergenic Intergenic 140027 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 346-197 chr17 65364375 65364556 + 2 NA Intergenic Intergenic -93076 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 176-115 chr5 141876752 141876887 + 2 NA intron (NM_002587, intron 1 of 2) CpG 1591 NM_002587 5097 Hs.79769 NM_002587 ENSG00000156453 PCDH1 PC42|PCDH42 protocadherin 1 protein-coding 244-299 chr5 43941765 43941926 + 2 NA Intergenic L1MA1|LINE|L1 -338615 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 331-191 chr16 50682503 50682767 + 2 NA Intergenic L1ME3B|LINE|L1 -1323 NM_182854 124460 Hs.460777 NM_153337 ENSG00000167208 SNX20 SLIC1 sorting nexin 20 protein-coding 393-226 chr3 126844015 126844339 + 2 NA intron (NM_032343, intron 4 of 7) L1MCc|LINE|L1 139937 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 254-99 chr13 82291608 82291817 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -1064729 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 466-179 chr3 177301246 177301582 + 2 NA intron (NR_047465, intron 1 of 1) AluSx|SINE|Alu 6972 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 271-315 chr4 75907653 75907795 + 2 NA Intergenic AluSq2|SINE|Alu -5272 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 608-70 chr2 63542541 63543053 + 2 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) 45680 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 380-261 chr3 173799132 173799385 + 2 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 121538 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 392-185 chr22 25597381 25597643 + 2 NA intron (NM_001362778, intron 1 of 19) L1MA5A|LINE|L1 32837 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 385-390 chr8 128432481 128432780 + 2 NA intron (NR_121672, intron 2 of 7) L1PA16|LINE|L1 132049 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 368-273 chr21 32226447 32226756 + 2 NA Intergenic L1MA9|LINE|L1 52448 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 303-415 chr7 18195618 18195904 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -68452 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 354-29 chr1 190449647 190449927 + 2 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 26223 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 280-356 chr6 120126754 120126935 + 2 NA Intergenic Intergenic 111665 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 232-339 chr6 147535653 147535829 + 2 NA intron (NM_001030060, intron 1 of 1) HUERS-P1-int|LTR|ERV1 27051 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 278-277 chr3 80962695 80962853 + 2 NA Intergenic ALR/Alpha|Satellite|centr -31094 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 319-225 chr2 5105682 5105986 + 2 NA Intergenic L1PA16|LINE|L1 -449612 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 580 chr1 60095427 60095845 + 2 NA Intergenic L1ME3A|LINE|L1 -21866 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 195-29 chr10 81898698 81898859 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 21091 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 218-242 chr4 62872769 62872950 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -711094 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 242-111 chr14 83077157 83077335 + 2 NA Intergenic L1PB4|LINE|L1 434614 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 329-353 chr3 21827053 21827283 + 2 NA Intergenic MIRb|SINE|MIR -75958 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 223-235 chr4 2018257 2018375 + 2 NA Intergenic MER110|LTR|ERV1 -9342 NM_005663 7469 Hs.21771 NM_005663 ENSG00000185049 NELFA NELF-A|P/OKcl.15|WHSC2 negative elongation factor complex member A protein-coding 337-553 chr8 121667997 121668206 + 2 NA Intergenic Intergenic -26661 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 676-18 chr10 82104493 82104996 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 128176 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 401-33 chr10 63793939 63794234 + 2 NA Intergenic L1MA2|LINE|L1 -272196 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 394-311 chr7 92498410 92498699 + 2 NA intron (NM_001282677, intron 15 of 22) intron (NM_001282677, intron 15 of 22) -20608 NM_001130925 30816 NM_014590 ENSG00000242950 ERVW-1 ENV|ENVW|ERVWE1|HERV-7q|HERV-W-ENV|HERV7Q|HERVW|HERVWENV endogenous retrovirus group W member 1, envelope protein-coding 358-131 chr14 104337900 104338201 + 2 NA Intergenic Intergenic 114466 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 287-59 chr10 76098529 76098777 + 2 NA intron (NM_001305581, intron 5 of 6) L1MCc|LINE|L1 315892 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 250-211 chr2 83561091 83561322 + 2 NA Intergenic L1ME4c|LINE|L1 38392 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 173-24 chr12 58801835 58801982 + 2 NA intron (NR_126341, intron 1 of 1) intron (NR_126341, intron 1 of 1) -20192 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 332-3 chr1 31693434 31693704 + 2 NA intron (NM_001856, intron 12 of 70) MIRb|SINE|MIR 10448 NM_001856 1307 Hs.368921 NM_001856 ENSG00000084636 COL16A1 447AA|FP1572 collagen type XVI alpha 1 chain protein-coding 307-156 chr15 45907013 45907290 + 2 NA intron (NR_135680, intron 2 of 4) MER65-int|LTR|ERV1 201956 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 226-7 chr1 71755681 71755858 + 2 NA intron (NM_173808, intron 3 of 6) L2a|LINE|L2 81243 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 439-245 chr6 57333222 57333528 + 2 NA intron (NM_000947, intron 5 of 13) HAL1|LINE|L1 15745 NM_000947 5558 Hs.654580 NM_000947 ENSG00000146143 PRIM2 PRIM2A|p58 DNA primase subunit 2 protein-coding 603-177 chr9 96693433 96694020 + 2 NA Intergenic AluSx|SINE|Alu -32095 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 271-319 chr4 86301730 86301927 + 2 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 52816 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 428-43 chr12 14011711 14012030 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -31514 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 162-68 chr2 204058119 204058254 + 2 NA Intergenic LTR89|LTR|ERVL? 121438 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 434-15 chr1 118959299 118959681 + 2 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 28853 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 194-125 chr3 88831331 88831457 + 2 NA Intergenic Intergenic -276227 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 274-51 chr10 85271647 85271840 + 2 NA Intergenic L1MB5|LINE|L1 -72805 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 200-118 chr19 56550984 56551128 + 2 NA 3' UTR (NM_001308440, exon 7 of 7) 3' UTR (NM_001308440, exon 7 of 7) 12108 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 433-54 chr12 9131388 9131706 + 2 NA Intergenic Intergenic -15318 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 216-324 chr7 90767798 90767950 + 2 NA intron (NM_012395, intron 3 of 13) intron (NM_012395, intron 3 of 13) 58058 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 238-319 chr6 54922200 54922360 + 2 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 75509 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 320-415 chr5 8250774 8250960 + 2 NA Intergenic L2|LINE|L2 206697 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 263-134 chr16 58897098 58897321 + 2 NA Intergenic L1M3|LINE|L1 -162893 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 331-403 chr5 3465730 3466020 + 2 NA intron (NR_033898, intron 2 of 4) L1ME1|LINE|L1 13059 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 358-126 chr14 81483630 81483884 + 2 NA intron (NM_005065, intron 19 of 20) Charlie2a|DNA|hAT-Charlie -33600 NR_109999 100506700 Hs.116304 NR_109999 ENSG00000258675 LINC02308 - long intergenic non-protein coding RNA 2308 ncRNA 371-200 chr2 190017805 190018039 + 2 NA Intergenic L1MA7|LINE|L1 44807 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 274-316 chr5 115250876 115251116 + 2 NA intron (NM_005023, intron 2 of 8) L1ME3A|LINE|L1 11881 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 240-346 chr5 30011443 30011673 + 2 NA Intergenic LTR86B2|LTR|ERVL 130998 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 271-100 chr12 55579782 55579960 + 2 NA Intergenic L1M2|LINE|L1 5456 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 712-99 chr8 141744720 141745350 + 2 NA Intergenic MLT2B1|LTR|ERVL 41278 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 560-166 chr7 23838525 23838945 + 2 NA Intergenic L1PREC2|LINE|L1 128516 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 389-66 chr11 97811144 97811509 + 2 NA Intergenic Intergenic -1209623 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 537-278 chr9 108044668 108045090 + 2 NA Intergenic Intergenic -555110 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 604-26 chr11 36444913 36445399 + 2 NA intron (NM_001160168, intron 4 of 5) intron (NM_001160168, intron 4 of 5) 44159 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 121-56 chr6 54302250 54302335 + 2 NA Intergenic Intergenic -6149 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 312-65 chr10 122966839 122967090 + 2 NA Intergenic L1PA13|LINE|L1 -12737 NM_024942 80007 Hs.501286 NM_024942 ENSG00000119965 C10orf88 - chromosome 10 open reading frame 88 protein-coding 271-268 chr3 76203034 76203235 + 2 NA Intergenic Intergenic -417585 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 409-43 chr11 103594638 103594906 + 2 NA Intergenic MLT1L-int|LTR|ERVL-MaLR -255134 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 318-155 chr13 26713952 26714147 + 2 NA Intergenic Intergenic 46737 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 280-395 chr7 123452573 123452722 + 2 NA non-coding (NR_104244, exon 14 of 14) non-coding (NR_104244, exon 14 of 14) 80301 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 350-202 chr19 52388793 52388993 + 2 NA TTS (NR_125345) TTS (NR_125345) 8864 NR_125345 102724105 Hs.188680 NR_125345 ENSG00000269834 ZNF528-AS1 - ZNF528 antisense RNA 1 ncRNA 292-215 chr2 56961270 56961535 + 2 NA Intergenic Intergenic -775632 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 292-20 chr1 105738503 105738720 + 2 NA Intergenic L1MC3|LINE|L1 -119676 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 323-587 chr9 106025304 106025479 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 330850 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 690-73 chr3 94685451 94685946 + 2 NA Intergenic L1PB3|LINE|L1 -252565 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 273-330 chr4 87427599 87427812 + 2 NA intron (NM_024047, intron 1 of 7) intron (NM_024047, intron 1 of 7) 5108 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 146-34 chr16 64502539 64502654 + 2 NA Intergenic L1PB4|LINE|L1 619467 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 556-50 chr12 46727105 46727641 + 2 NA Intergenic MLT2A2|LTR|ERVL 98624 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 147-47 chr2 152214421 152214530 + 2 NA Intergenic L1MB8|LINE|L1 -38712 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 332-424 chr5 102708121 102708429 + 2 NA Intergenic Intergenic -36811 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 338-186 chr15 82768022 82768345 + 2 NA intron (NM_001007122, intron 9 of 12) intron (NM_001007122, intron 9 of 12) 12238 NR_003011 677778 Hs.743895 NR_003011 ENSG00000277864 SCARNA15 ACA45 small Cajal body-specific RNA 15 ncRNA 371-30 chr1 227367137 227367437 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -48795 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 269-59 chr11 21346551 21346801 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 677090 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 200-179 chr3 107292306 107292452 + 2 NA intron (NR_028302, intron 2 of 3) intron (NR_028302, intron 2 of 3) 51687 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 526-178 chr4 12374601 12375042 + 2 NA Intergenic MLT2A2|LTR|ERVL 151370 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 393-396 chrX 127461124 127461488 + 2 NA Intergenic L1PA13|LINE|L1 591097 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 494-154 chr20 50563384 50563740 + 2 NA intron (NM_002827, intron 2 of 9) intron (NM_002827, intron 2 of 9) -22224 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 871-31 chr6 65190046 65190715 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -111038 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 289-400 chr5 179086041 179086314 + 2 NA Intergenic L1MB8|LINE|L1 25804 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 273-291 chr3 64935910 64936155 + 2 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -248032 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 372-487 chr8 96707161 96707508 + 2 NA intron (NM_016134, intron 1 of 7) MER3|DNA|hAT-Charlie 62092 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 468-261 chr5 123772828 123773237 + 2 NA Intergenic L1MA4|LINE|L1 227615 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 397-60 chr12 6449665 6449956 + 2 NA intron (NR_015382, intron 1 of 5) AluSq2|SINE|Alu 1707 NR_015382 678655 Hs.655224 NR_015382 ENSG00000215039 CD27-AS1 - CD27 antisense RNA 1 ncRNA 539-70 chr14 71831565 71832001 + 2 NA Intergenic L1M5|LINE|L1 -100388 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 272-40 chr10 29856958 29857208 + 2 NA Intergenic Intergenic -120147 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 322-372 chr4 67559095 67559316 + 2 NA intron (NM_012108, intron 1 of 8) intron (NM_012108, intron 1 of 8) 478 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 233-57 chr11 61449943 61450123 + 2 NA Intergenic Intergenic 19908 NM_017841 54949 Hs.313247 NM_017841 ENSG00000167985 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 261-10 chr1 74421479 74421647 + 2 NA intron (NM_015978, intron 17 of 24) intron (NM_015978, intron 17 of 24) 61877 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 633-17 chr11 17318990 17319513 + 2 NA intron (NM_001352669, intron 12 of 14) L1MC4|LINE|L1 -32549 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 326-165 chr15 42031477 42031770 + 2 NA intron (NM_001206670, intron 1 of 19) intron (NM_001206670, intron 1 of 19) 19080 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 370-481 chrX 7621171 7621490 + 2 NA Intergenic Intergenic -220932 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 198-177 chr4 27228337 27228479 + 2 NA intron (NR_125921, intron 2 of 5) L1ME4a|LINE|L1 10929 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 380-238 chr22 43763315 43763569 + 2 NA intron (NM_198856, intron 3 of 29) L1MB2|LINE|L1 48863 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 154-51 chr2 146161975 146162062 + 2 NA Intergenic Intergenic -425039 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 268-228 chr21 30963629 30963862 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger 74731 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 193-57 chr14 48497623 48497746 + 2 NA Intergenic Intergenic -702670 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 262-95 chr12 33049934 33050122 + 2 NA Intergenic L2b|LINE|L2 -153182 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 339-478 chr5 162784662 162784904 + 2 NA Intergenic Intergenic -652788 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 233-171 chr2 80368194 80368417 + 2 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 54926 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 328-186 chr15 93538543 93538806 + 2 NA Intergenic L1ME5|LINE|L1 -317886 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 447-91 chr16 51662064 51662462 + 2 NA Intergenic L1M5|LINE|L1 -100256 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 281-147 chr16 52516059 52516334 + 2 NA intron (NM_001080430, intron 1 of 6) intron (NM_001080430, intron 1 of 6) 30947 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 328-132 chr13 77954064 77954328 + 2 NA intron (NM_000115, intron 1 of 7) L1MB1|LINE|L1 21331 NM_000115 1910 Hs.82002 NM_000115 ENSG00000136160 EDNRB ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A endothelin receptor type B protein-coding 678-12 chr10 123509357 123509907 + 2 NA Intergenic Intergenic -156723 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 541-163 chr3 148623047 148623523 + 2 NA Intergenic L1ME3A|LINE|L1 -74586 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 324-300 chr2 223722351 223722536 + 2 NA Intergenic Intergenic 115139 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 296-259 chr2 227916626 227916812 + 2 NA intron (NR_138459, intron 11 of 13) intron (NR_138459, intron 11 of 13) 45088 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 239-266 chr3 192250852 192250988 + 2 NA intron (NR_046596, intron 1 of 4) intron (NR_046596, intron 1 of 4) 12290 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 337-249 chr2 51903661 51903854 + 2 NA intron (NR_135237, intron 7 of 10) L1M4c|LINE|L1 -466891 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 382-432 chr9 30606366 30606711 + 2 NA Intergenic Intergenic -198084 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 355-53 chr10 60990872 60991146 + 2 NA intron (NM_001350902, intron 1 of 11) L2a|LINE|L2 9988 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 396-7 chr1 59390080 59390444 + 2 NA intron (NM_001350794, intron 5 of 14) MLT1J|LTR|ERVL-MaLR 80230 NM_001350790 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 273-437 chr7 147189505 147189708 + 2 NA intron (NM_014141, intron 7 of 22) intron (NM_014141, intron 7 of 22) -91997 NR_110829 101928700 Hs.571218 NR_110829 ENSG00000236795 LOC101928700 - uncharacterized LOC101928700 ncRNA 442-206 chr4 31753663 31753987 + 2 NA Intergenic Intergenic -243554 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 348-246 chr2 192588675 192588879 + 2 NA Intergenic L1MC3|LINE|L1 -161068 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 194-77 chr18 6696093 6696256 + 2 NA Intergenic L1MC5|LINE|L1 -33542 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 442-279 chr7 143973357 143973772 + 2 NA Intergenic L1M5|LINE|L1 13637 NM_012369 26211 Hs.553595 NM_012369 ENSG00000213215 OR2F1 7M1-2|OLF3|OR14-60|OR2F3|OR2F3P|OR2F4|OR2F5|OR7-139|OR7-140 olfactory receptor family 2 subfamily F member 1 (gene/pseudogene) protein-coding 431-287 chr8 33593988 33594266 + 2 NA intron (NM_001305115, intron 2 of 3) intron (NM_001305115, intron 2 of 3) 3670 NM_001305116 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 360-170 chr17 65909884 65910087 + 2 NA intron (NM_001353129, intron 19 of 26) HAL1b|LINE|L1 -83442 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 233-7 chr1 100884017 100884134 + 2 NA intron (NR_048570, intron 2 of 5) intron (NR_048570, intron 2 of 5) 10767 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 543-263 chr9 73700014 73700488 + 2 NA Intergenic Intergenic 548386 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 207-211 chr4 31914219 31914381 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -83079 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 439-110 chr17 69089101 69089458 + 2 NA intron (NM_080284, intron 27 of 38) intron (NM_080284, intron 27 of 38) -10263 NR_049834 100847008 NR_049834 ENSG00000265331 MIR4524B - microRNA 4524b ncRNA 472-149 chr2 33526554 33526949 + 2 NA intron (NM_015376, intron 8 of 16) intron (NM_015376, intron 8 of 16) 12876 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 183-105 chr4 71969397 71969557 + 2 NA Intergenic L1MEi|LINE|L1 -62327 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 212-200 chr22 40168096 40168283 + 2 NA intron (NM_001024843, intron 4 of 23) intron (NM_001024843, intron 4 of 23) -9736 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 268-303 chr5 13768945 13769108 + 2 NA exon (NM_001369, exon 58 of 79) exon (NM_001369, exon 58 of 79) 175454 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 295-14 chr1 116294105 116294367 + 2 NA Intergenic MIRb|SINE|MIR -79008 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 272-410 chr7 9473726 9473981 + 2 NA Intergenic L1ME3|LINE|L1 -160417 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 360-397 chr6 23676239 23676529 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -449831 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 404-146 chr18 74806289 74806638 + 2 NA intron (NM_017757, intron 3 of 7) MIRc|SINE|MIR 175500 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 473-297 chr9 96751253 96751559 + 2 NA Intergenic L1MB5|LINE|L1 25585 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 382-343 chr5 141238056 141238432 + 2 NA TTS (NR_001281) TTS (NR_001281) -1877 NR_001282 84054 Hs.570898 NR_001282 PCDHB19P PCDH-PSI5|PCDHB19 protocadherin beta 19 pseudogene pseudo 211-90 chr14 82162177 82162340 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -419120 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 258-115 chr14 34369869 34370055 + 2 NA Intergenic Intergenic 92278 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 297-12 chr1 60618727 60618971 + 2 NA intron (NR_146508, intron 1 of 7) intron (NR_146508, intron 1 of 7) 3836 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 546-40 chr11 67180252 67180777 + 2 NA intron (NR_027473, intron 3 of 20) intron (NR_027473, intron 3 of 20) -59500 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 256-299 chr4 145512808 145513004 + 2 NA intron (NM_001354817, intron 1 of 6) L1MEg|LINE|L1 4288 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 971-7 chr12 46508957 46509635 + 2 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 125189 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 447-278 chr8 121270241 121270645 + 2 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -368903 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 358-528 chrX 81831556 81831793 + 2 NA Intergenic L2|LINE|L2 629572 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 514-144 chr2 67147039 67147549 + 2 NA intron (NR_038844, intron 5 of 7) intron (NR_038844, intron 5 of 7) 60848 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 290-118 chr13 55216125 55216380 + 2 NA Intergenic Intergenic 41798 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 529-241 chrX 64958191 64958570 + 2 NA intron (NM_001178032, intron 1 of 4) intron (NM_001178032, intron 1 of 4) 18070 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 397-152 chr2 54423657 54424047 + 2 NA Intergenic Intergenic -32475 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 330-441 chr5 136686053 136686350 + 2 NA Intergenic L1PA15-16|LINE|L1 -320725 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 246-202 chr2 117746107 117746302 + 2 NA Intergenic L1ME3G|LINE|L1 -68487 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 970-10 chr15 93750700 93751343 + 2 NA Intergenic L1PA11|LINE|L1 -105539 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 359-60 chr10 59125343 59125585 + 2 NA Intergenic L1ME1|LINE|L1 51000 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 457-104 chr19 37186981 37187281 + 2 NA exon (NM_152279, exon 5 of 5) exon (NM_152279, exon 5 of 5) -14390 NM_152655 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 287-262 chr3 114661772 114661938 + 2 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -36910 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 419-201 chr4 33692225 33692538 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 347512 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 315-502 chr8 138590302 138590478 + 2 NA intron (NM_152888, intron 64 of 64) intron (NM_152888, intron 64 of 64) -92660 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 289-326 chr3 193824441 193824599 + 2 NA Intergenic L1ME2|LINE|L1 19489 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 170-85 chr21 31000634 31000748 + 2 NA Intergenic Intergenic 37785 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 394-290 chr6 133124497 133124725 + 2 NA Intergenic L1M7|LINE|L1 36531 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 374-280 chr4 69787924 69788142 + 2 NA Intergenic Intergenic -27413 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 679-10 chr1 239228119 239228570 + 2 NA Intergenic Intergenic -158224 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 259-257 chr3 112245403 112245648 + 2 NA intron (NM_001320531, intron 9 of 27).2 L1ME2|LINE|L1 48691 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 218-92 chr14 47493716 47493862 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -150543 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 300-161 chr18 3881432 3881720 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 3396 NR_038895 201477 Hs.627208 NR_038895 ENSG00000263724 DLGAP1-AS3 - DLGAP1 antisense RNA 3 ncRNA 981-9 chr15 54461181 54461886 + 2 NA intron (NM_001329919, intron 18 of 31) intron (NM_001329919, intron 18 of 31) 448885 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 268-313 chr5 68855734 68855924 + 2 NA Intergenic L1PREC2|LINE|L1 174098 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 352-402 chr5 16010222 16010449 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 75153 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 278-374 chr6 113573473 113573706 + 2 NA Intergenic Intergenic 76486 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 603-10 chr1 234707020 234707532 + 2 NA Intergenic Intergenic -16766 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 446-119 chr17 51396614 51396987 + 2 NA Intergenic Intergenic -38627 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 220-62 chr10 120067796 120068000 + 2 NA Intergenic L1MA10|LINE|L1 109385 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 340-364 chr3 87549779 87550058 + 2 NA Intergenic L1M5|LINE|L1 -242788 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 210-301 chr8 136480493 136480668 + 2 NA Intergenic Intergenic -50218 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 247-278 chr3 172253569 172253743 + 2 NA intron (NM_001135095, intron 6 of 25) intron (NM_001135095, intron 6 of 25) 194800 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 250-353 chr5 96251525 96251758 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 172503 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 277-265 chr3 109215597 109215770 + 2 NA Intergenic Intergenic 37518 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 239-339 chr5 162808465 162808594 + 2 NA Intergenic Intergenic -629042 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 373-354 chr6 45837699 45838062 + 2 NA Intergenic Intergenic 99717 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 224-348 chr9 26936193 26936353 + 2 NA intron (NM_001321546, intron 1 of 12) HAL1|LINE|L1 -10717 NM_001099223 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 254-129 chr15 60029822 60030010 + 2 NA Intergenic L2c|LINE|L2 25605 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 500-70 chr12 78854325 78854725 + 2 NA Intergenic L1M5|LINE|L1 -9457 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 241-95 chr13 23188742 23188909 + 2 NA intron (NM_000231, intron 1 of 7) HERV16-int|LTR|ERVL 7904 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 309-539 chr8 76044327 76044517 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -362232 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 274-116 chr14 33116183 33116429 + 2 NA intron (NM_001164749, intron 2 of 11) MamGypsy2-I|LTR|Gypsy 177427 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 313-135 chr14 20035335 20035529 + 2 NA promoter-TSS (NM_001004714) promoter-TSS (NM_001004714) -674 NM_001004714 390433 Hs.553573 NM_001004714 ENSG00000176253 OR4K13 OR14-27 olfactory receptor family 4 subfamily K member 13 protein-coding 222-101 chr13 79594513 79594687 + 2 NA Intergenic Intergenic 27873 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 343-398 chr4 104343960 104344151 + 2 NA Intergenic L2c|LINE|L2 -146910 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 492-206 chr5 45235273 45235657 + 2 NA Intergenic L1PA15|LINE|L1 426518 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 233-273 chr4 116794455 116794644 + 2 NA Intergenic L2a|LINE|L2 291027 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 284-232 chr20 22671276 22671432 + 2 NA intron (NR_146527, intron 2 of 2) L1M2|LINE|L1 13990 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 405-286 chr6 132341711 132341992 + 2 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 59624 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 356-361 chr4 54150185 54150520 + 2 NA Intergenic AluJb|SINE|Alu 50189 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 251-124 chr16 79036748 79036957 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 563885 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 367-269 chr22 43584942 43585181 + 2 NA intron (NM_198856, intron 22 of 29) L1MCb|LINE|L1 68807 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 529-208 chr7 131883955 131884401 + 2 NA Intergenic Intergenic -26042 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 400-108 chr15 49687532 49687782 + 2 NA Intergenic Intergenic 66609 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 223-116 chr17 27546281 27546475 + 2 NA intron (NM_014238, intron 2 of 20) MIRb|SINE|MIR 74414 NM_014238 8844 Hs.133534 NM_014238 ENSG00000141068 KSR1 KSR|RSU2 kinase suppressor of ras 1 protein-coding 591-110 chr4 54763232 54763674 + 2 NA Intergenic L1PA14|LINE|L1 105525 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 503-85 chr13 42034552 42034991 + 2 NA Intergenic Intergenic -5265 NM_001204504 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 335-85 chr11 21303437 21303727 + 2 NA intron (NM_201551, intron 14 of 18) L1P5|LINE|L1 633996 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 403-278 chr7 19103072 19103379 + 2 NA Intergenic Intergenic 14411 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 394-276 chr5 107646054 107646374 + 2 NA intron (NM_001962, intron 1 of 4) L1MA9|LINE|L1 24723 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 450-322 chr9 77361196 77361538 + 2 NA intron (NM_001018038, intron 59 of 68) L1MB4|LINE|L1 -86282 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 124-75 chrX 147934746 147934848 + 2 NA intron (NR_033700, intron 9 of 14) intron (NR_033700, intron 9 of 14) 22846 NM_002024 2332 Hs.103183 NM_002024 ENSG00000102081 FMR1 FMRP|FRAXA|POF|POF1 fragile X mental retardation 1 protein-coding 241-70 chr11 84615099 84615260 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 105763 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 184-143 chr6 81456411 81456557 + 2 NA Intergenic Intergenic 296197 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 281-29 chr1 236446733 236446955 + 2 NA intron (NM_080738, intron 4 of 5) L2c|LINE|L2 51431 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 270-390 chr8 104651042 104651186 + 2 NA Intergenic Intergenic -62090 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 562-99 chr2 22513725 22514103 + 2 NA Intergenic Intergenic -22565 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 478-246 chr6 38355646 38355988 + 2 NA intron (NM_052893, intron 7 of 11) HAL1|LINE|L1 -125779 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 168-110 chr8 79829978 79830081 + 2 NA intron (NR_110954, intron 2 of 5) MER5A|DNA|hAT-Charlie 41708 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 314-291 chr2 103623388 103623676 + 2 NA Intergenic L1PA16|LINE|L1 -639103 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 429-129 chr18 61149056 61149287 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -184259 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 751-59 chr5 41396621 41397256 + 2 NA intron (NM_001005473, intron 1 of 2) MSTA-int|LTR|ERVL-MaLR 113663 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 312-314 chr22 34444005 34444173 + 2 NA Intergenic Intergenic -521201 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 247-314 chr5 11432736 11432944 + 2 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 156077 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 331-11 chr1 90387545 90387815 + 2 NA Intergenic Intergenic -270070 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 411-206 chr4 76636416 76636816 + 2 NA intron (NM_020859, intron 2 of 10) MER6A|DNA|TcMar-Tigger 61065 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 269-226 chr20 53202321 53202541 + 2 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 17148 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 203-37 chr11 78867597 78867726 + 2 NA intron (NM_001098816, intron 9 of 33) intron (NM_001098816, intron 9 of 33) -292797 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 324-49 chr10 27502829 27503093 + 2 NA Intergenic Intergenic -1213 NM_001256412 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 419-79 chr12 125989286 125989670 + 2 NA Intergenic Intergenic -6104 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 263-109 chr14 59617561 59617749 + 2 NA intron (NM_021136, intron 3 of 8) HUERS-P1-int|LTR|ERV1 -7516 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 340-88 chr11 96964158 96964403 + 2 NA Intergenic L1M1|LINE|L1 455855 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 382-276 chr3 139852900 139853224 + 2 NA Intergenic L1PA16|LINE|L1 -82123 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 257-273 chr3 110412951 110413150 + 2 NA Intergenic Intergenic 656909 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 350-537 chr8 124014048 124014329 + 2 NA intron (NR_040044, intron 3 of 5) LTR48|LTR|ERV1 26594 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 262-274 chr3 39760991 39761152 + 2 NA Intergenic L2|LINE|L2 -47843 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 322-425 chr5 46045296 46045527 + 2 NA Intergenic ALR/Alpha|Satellite|centr -349031 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 235-408 chrX 80448437 80448636 + 2 NA Intergenic Intergenic 28089 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 330-476 chr6 167773331 167773630 + 2 NA Intergenic Intergenic -22049 NR_149041 441179 Hs.192711 NR_149041 ENSG00000269155 LOC441179 - uncharacterized LOC441179 ncRNA 236-188 chr2 167038609 167038765 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 102268 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 218-23 chr10 9830758 9830945 + 2 NA Intergenic Intergenic -227871 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 265-382 chr8 20056261 20056505 + 2 NA Intergenic MER21B|LTR|ERVL 117130 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 427-178 chr4 52780403 52780819 + 2 NA Intergenic Intergenic -9383 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 238-185 chr2 139995552 139995703 + 2 NA Intergenic Intergenic 591058 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 231-335 chr7 68326446 68326602 + 2 NA Intergenic LTR49|LTR|ERV1 306271 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 140-72 chr7 133832062 133832139 + 2 NA intron (NM_021807, intron 11 of 17) L1MC3|LINE|L1 -7212 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 353-477 chr7 21699214 21699493 + 2 NA intron (NM_001277115, intron 36 of 81) intron (NM_001277115, intron 36 of 81) 156314 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 415-207 chr5 7680690 7680986 + 2 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 170295 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 288-49 chr10 55167864 55168101 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -366691 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 334-128 chr13 77990187 77990453 + 2 NA intron (NR_108076, intron 1 of 2) intron (NR_108076, intron 1 of 2) 4453 NR_108076 101927176 Hs.116150 NR_108076 LINC01069 - long intergenic non-protein coding RNA 1069 ncRNA 231-383 chrX 12865924 12866114 + 2 NA Intergenic Intergenic -1053 NM_016562 51284 Hs.659215 NM_016562 ENSG00000196664 TLR7 TLR7-like toll like receptor 7 protein-coding 319-401 chr5 23102235 23102538 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -249042 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 446-208 chr4 10324465 10324713 + 2 NA Intergenic Intergenic 132837 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 251-20 chr1 207288866 207289031 + 2 NA Intergenic Intergenic -32730 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 529-127 chr20 15894492 15895000 + 2 NA intron (NR_130924, intron 1 of 1) intron (NR_130924, intron 1 of 1) 28568 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 398-83 chr12 127266040 127266282 + 2 NA Intergenic Intergenic 18122 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 627-129 chrX 102983184 102983537 + 2 NA Intergenic Intergenic 46088 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 673-38 chr16 20151944 20152396 + 2 NA Intergenic L2b|LINE|L2 -78392 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 318-426 chr5 8108400 8108582 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 239343 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 291-128 chr14 65928844 65929025 + 2 NA Intergenic Intergenic 457832 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 459-228 chr5 5924059 5924500 + 2 NA Intergenic Intergenic 413013 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 358-405 chr6 64824958 64825188 + 2 NA intron (NM_001292009, intron 19 of 43) L2a|LINE|L2 -476345 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 318-462 chr5 151384418 151384634 + 2 NA Intergenic Intergenic -36967 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 251-181 chr2 119598060 119598280 + 2 NA intron (NR_073132, intron 7 of 24) intron (NR_073132, intron 7 of 24) 53721 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 235-174 chr2 81825570 81825798 + 2 NA Intergenic Intergenic -358738 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 586-54 chr15 44078738 44079114 + 2 NA intron (NM_032892, intron 1 of 13) L1MB3|LINE|L1 115520 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 320-133 chr13 44109391 44109642 + 2 NA intron (NR_132368, intron 2 of 3) intron (NR_132368, intron 2 of 3) -1033 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 530-65 chr13 101096281 101096753 + 2 NA intron (NM_001350749, intron 27 of 43) L1MB8|LINE|L1 -152153 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 204-298 chr8 134823246 134823384 + 2 NA Intergenic Intergenic -14754 NR_126028 552853 Hs.575612 NR_126028 ENSG00000253433 NCRNA00250 C8orf24 non-protein coding RNA 250 ncRNA 493-57 chr12 32434281 32434702 + 2 NA intron (NM_001370298, intron 1 of 16) intron (NM_001370298, intron 1 of 16) 34933 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 160-33 chr17 42839406 42839513 + 2 NA intron (NR_049772, intron 9 of 9) intron (NR_049772, intron 9 of 9) -5121 NM_009590 314 Hs.143102 NM_001158 ENSG00000131480 AOC2 DAO2|RAO|SSAO amine oxidase copper containing 2 protein-coding 523-113 chr18 42981688 42982096 + 2 NA intron (NM_001272077, intron 2 of 5) Ricksha_b|DNA|MULE-MuDR 133793 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 218-334 chr8 113106075 113106234 + 2 NA intron (NM_001363185, intron 4 of 66) MER58C|DNA|hAT-Charlie 270998 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 299-134 chr14 58257789 58257961 + 2 NA intron (NR_038123, intron 3 of 9) intron (NR_038123, intron 3 of 9) 13032 NM_002788 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 220-319 chr6 84354909 84355100 + 2 NA Intergenic Intergenic 119925 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 406-167 chr20 42066520 42066907 + 2 NA Intergenic L1M6|LINE|L1 -448336 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 328-530 chr7 41296891 41297101 + 2 NA Intergenic MamRep605|LTR?|LTR? 195392 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 270-195 chr2 152269989 152270226 + 2 NA Intergenic L1M4c|LINE|L1 -65067 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 213-206 chr4 70240329 70240457 + 2 NA Intergenic Intergenic -2223 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 318-532 chr8 50080187 50080429 + 2 NA intron (NR_135798, intron 1 of 15) L1ME1|LINE|L1 -83823 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 286-404 chr7 14831842 14832024 + 2 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 9517 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 505-222 chr4 104059451 104059924 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -339702 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 255-32 chr10 60279684 60279875 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 110096 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 309-101 chr12 34591796 34591997 + 2 NA Intergenic ALR/Alpha|Satellite|centr 569400 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 336-462 chr5 108142725 108143039 + 2 NA intron (NM_001163315, intron 6 of 8) L1PA7|LINE|L1 239216 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 553-10 chr1 193861081 193861468 + 2 NA Intergenic Intergenic 556529 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 284-195 chr2 56268834 56268996 + 2 NA intron (NM_001348516, intron 2 of 2) Arthur1|DNA|hAT-Tip100 -83145 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 826-30 chr2 239849491 239850205 + 2 NA Intergenic AluSq2|SINE|Alu 86988 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 632-73 chr3 50821608 50821972 + 2 NA intron (NM_004947, intron 2 of 52) L1PA16|LINE|L1 146710 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 450-29 chr10 25178178 25178508 + 2 NA intron (NM_020752, intron 1 of 10) intron (NM_020752, intron 1 of 10) -2067 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 343-130 chr13 114171194 114171449 + 2 NA Intergenic MER57-int|LTR|ERV1 -38698 NM_007368 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 457-114 chr2 50090391 50090670 + 2 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -116327 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 225-187 chr21 23115216 23115377 + 2 NA Intergenic Intergenic 36012 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 299-495 chrUn_KI270442v1 101845 102115 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 250-287 chr3 129964375 129964604 + 2 NA Intergenic Intergenic -10231 NM_007117 7200 Hs.182231 NM_007117 ENSG00000170893 TRH Pro-TRH|TRF thyrotropin releasing hormone protein-coding 227-345 chr7 46097549 46097765 + 2 NA Intergenic L1MB7|LINE|L1 -176385 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 362-132 chr13 55882772 55883003 + 2 NA Intergenic L1M3c|LINE|L1 708433 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 451-232 chr8 106032636 106032931 + 2 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 27720 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 550-162 chr4 54881280 54881817 + 2 NA Intergenic Intergenic 223620 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 647-68 chr3 170794615 170795076 + 2 NA Intergenic L1MC3|LINE|L1 75350 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 306-225 chr2 27561361 27561604 + 2 NA Intergenic L1MA7|LINE|L1 -15040 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 167-111 chr8 88370119 88370253 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie -42703 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 340-322 chr20 48114294 48114614 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -124337 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 157-46 chr16 35582929 35583031 + 2 NA Intergenic LTR70|LTR|ERV1 -75810 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 337-451 chr5 67353670 67353902 + 2 NA Intergenic Intergenic -156987 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 162-74 chr20 55099339 55099439 + 2 NA Intergenic L1MD1|LINE|L1 -323654 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 266-429 chr8 112021547 112021716 + 2 NA Intergenic L1MD|LINE|L1 -621862 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 355-108 chr11 108175450 108175785 + 2 NA intron (NM_001321307, intron 12 of 17) intron (NM_001321307, intron 12 of 17) 47021 NM_001321307 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 269-29 chr1 216494548 216494767 + 2 NA Intergenic L1ME3A|LINE|L1 -71209 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 343-69 chr11 5595247 5595505 + 2 NA promoter-TSS (NM_058166) promoter-TSS (NM_058166) -735 NM_058166 117854 Hs.729048 NM_058166 ENSG00000121236 TRIM6 RNF89 tripartite motif containing 6 protein-coding 376-340 chr6 10159124 10159390 + 2 NA Intergenic Intergenic -245245 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 375-360 chr6 129484462 129484763 + 2 NA intron (NM_000426, intron 55 of 64) L1ME3F|LINE|L1 225565 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 456-176 chr20 7635775 7636159 + 2 NA Intergenic Intergenic 264359 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 801-5 chr11 86533481 86534139 + 2 NA intron (NM_001014811, intron 3 of 13) Tigger3|DNA|TcMar-Tigger 138388 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 281-161 chr17 53952862 53953028 + 2 NA Intergenic Intergenic 130018 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 129-32 chr2 13106380 13106469 + 2 NA Intergenic MER65A|LTR|ERV1 -99411 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 364-165 chr17 30360022 30360361 + 2 NA Intergenic Intergenic -18736 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 382-296 chr4 55534004 55534342 + 2 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 11759 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 449-22 chr1 227322896 227323281 + 2 NA Intergenic Intergenic -4596 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 336-432 chr4 147894980 147895230 + 2 NA intron (NM_024605, intron 10 of 22) L1MCc|LINE|L1 112510 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 304-563 chrX 35675199 35675490 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -122998 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 240-11 chr1 72781350 72781527 + 2 NA Intergenic Intergenic -498899 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 402-66 chr12 64098859 64099125 + 2 NA intron (NM_001346201, intron 15 of 21) intron (NM_001346201, intron 15 of 21) 123304 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 336-226 chr18 37071325 37071534 + 2 NA intron (NM_001353919, intron 6 of 8) MER2|DNA|TcMar-Tigger -147615 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 638-57 chr17 72809299 72809759 + 2 NA intron (NM_001352692, intron 6 of 9) HAL1|LINE|L1 -169057 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 187-103 chr3 17678408 17678544 + 2 NA intron (NM_001134381, intron 1 of 23) HAL1|LINE|L1 21544 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 243-428 chr7 115567214 115567423 + 2 NA Intergenic Intergenic 14123 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 682-109 chr8 141838339 141838750 + 2 NA Intergenic L1MEf|LINE|L1 -52231 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 220-382 chr8 133542101 133542255 + 2 NA intron (NM_003033, intron 2 of 8) L1MC4|LINE|L1 29709 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 249-71 chr11 30274014 30274253 + 2 NA Intergenic L2b|LINE|L2 43119 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 389-199 chr2 232072105 232072349 + 2 NA intron (NR_046477, intron 5 of 18) L2a|LINE|L2 -100426 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 403-95 chr14 49277428 49277790 + 2 NA Intergenic Intergenic 308771 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 632-49 chr2 45140343 45140833 + 2 NA Intergenic Intergenic 114353 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 377-308 chr5 14291972 14292218 + 2 NA intron (NM_007118, intron 5 of 56) intron (NM_007118, intron 5 of 56) 148753 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 216-126 chr16 52997574 52997728 + 2 NA Intergenic Intergenic 55222 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 431-46 chr10 78449380 78449760 + 2 NA Intergenic Intergenic 182228 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 523-73 chr14 24615984 24616316 + 2 NA Intergenic MIR|SINE|MIR -6465 NM_001270780 2999 Hs.348264 NM_033423 ENSG00000100450 GZMH CCP-X|CGL-2|CSP-C|CTLA1|CTSGL2 granzyme H protein-coding 293-156 chr17 66922072 66922352 + 2 NA Intergenic MER21B|LTR|ERVL -42495 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 309-339 chr3 21865443 21865701 + 2 NA Intergenic Intergenic -91567 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 201-210 chr5 146574267 146574422 + 2 NA Intergenic MIR|SINE|MIR -58231 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 402-132 chr19 36552794 36553098 + 2 NA intron (NM_001352273, intron 3 of 5) MIR|SINE|MIR -20124 NR_110703 101927599 Hs.515376 NR_110703 ENSG00000233527 ZNF529-AS1 - ZNF529 antisense RNA 1 ncRNA 485-43 chr11 56100348 56100669 + 2 NA Intergenic AluJo|SINE|Alu -4535 NM_001005200 390151 Hs.553744 NM_001005200 ENSG00000181767 OR8H2 OR11-171 olfactory receptor family 8 subfamily H member 2 protein-coding 423-78 chr14 65874478 65874779 + 2 NA Intergenic L1PA13|LINE|L1 403526 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 265-230 chr22 43669645 43669852 + 2 NA intron (NM_198856, intron 13 of 29) intron (NM_198856, intron 13 of 29) 142557 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 349-383 chr4 115968831 115969139 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -330740 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 318-408 chr4 92561946 92562168 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 257658 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 239-342 chr6 5556516 5556693 + 2 NA intron (NM_006567, intron 5 of 6) intron (NM_006567, intron 5 of 6) -98529 NR_125847 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 206-77 chr15 65409945 65410074 + 2 NA intron (NM_020962, intron 3 of 19) intron (NM_020962, intron 3 of 19) 12938 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 324-107 chr12 2530601 2530908 + 2 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 141466 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 297-49 chr10 53115592 53115802 + 2 NA Intergenic Intergenic -343997 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 307-235 chr2 57287002 57287191 + 2 NA Intergenic Intergenic -620555 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 252-148 chr16 72598170 72598410 + 2 NA intron (NR_159372, intron 1 of 7) L1PREC2|LINE|L1 66680 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 392-94 chr15 60948842 60949147 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 267425 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 761-69 chr7 111578688 111579098 + 2 NA Intergenic L1MA1|LINE|L1 -16376 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 266-212 chr2 215098481 215098684 + 2 NA intron (NR_103740, intron 2 of 54) L2a|LINE|L2 40044 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 320-366 chr3 168275155 168275348 + 2 NA intron (NR_021485, intron 1 of 15) intron (NR_021485, intron 1 of 15) 25729 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 457-12 chr1 118275654 118276007 + 2 NA Intergenic Intergenic -90602 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 155-98 chr8 119925958 119926107 + 2 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 52310 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 219-162 chr2 27644517 27644670 + 2 NA intron (NM_007266, intron 12 of 13) L1M5|LINE|L1 15543 NM_007266 11321 Hs.18259 NM_007266 ENSG00000198522 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 372-225 chr2 53281965 53282261 + 2 NA Intergenic Intergenic -485670 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 178-67 chr2 104249870 104250024 + 2 NA Intergenic Intergenic 158385 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 369-442 chr9 74156263 74156594 + 2 NA Intergenic Intergenic -215103 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 340-161 chr14 95067308 95067555 + 2 NA Intergenic Intergenic 66072 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 337-315 chr20 55219246 55219471 + 2 NA Intergenic L1MC3|LINE|L1 -203685 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 383-159 chr17 64608044 64608387 + 2 NA intron (NM_022739, intron 1 of 18) intron (NM_022739, intron 1 of 18) 54092 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 259-39 chr10 24049242 24049399 + 2 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -159471 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 189-51 chr14 26146071 26146226 + 2 NA Intergenic L1ME4b|LINE|L1 407282 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 297-67 chr11 25816696 25816987 + 2 NA Intergenic AluSz|SINE|Alu -372282 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 270-225 chr22 34297232 34297465 + 2 NA Intergenic MIR|SINE|MIR -374460 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 257-313 chr5 9283204 9283353 + 2 NA intron (NM_003966, intron 5 of 22) MLT1E|LTR|ERVL-MaLR -228055 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 138-75 chr6 125285668 125285772 + 2 NA intron (NM_016063, intron 4 of 5) HAL1M8|LINE|L1 16247 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 440-139 chr20 36450651 36451049 + 2 NA intron (NM_001365621, intron 7 of 12) MLT1H-int|LTR|ERVL-MaLR -10618 NM_001042486 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 313-535 chr8 118655414 118655704 + 2 NA intron (NR_038210, intron 2 of 4) MIR|SINE|MIR -33596 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 341-163 chr15 46579859 46580053 + 2 NA Intergenic MIRc|SINE|MIR -604133 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 292-294 chr3 160116141 160116328 + 2 NA intron (NR_108088, intron 3 of 9) L1PA8|LINE|L1 90858 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 315-174 chr16 72480040 72480289 + 2 NA intron (NR_159371, intron 3 of 5) L1MD1|LINE|L1 184806 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 414-134 chr18 21058624 21059005 + 2 NA intron (NM_005406, intron 2 of 32) AluSz6|SINE|Alu 52999 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 495-140 chr21 25199785 25200136 + 2 NA Intergenic Intergenic 231741 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 186-80 chr2 69055076 69055193 + 2 NA intron (NM_032208, intron 3 of 17) intron (NM_032208, intron 3 of 17) 41990 NM_018153 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 347-272 chr20 50537347 50537543 + 2 NA intron (NM_001278618, intron 1 of 8) L1MD2|LINE|L1 27062 NM_002827 5770 Hs.417549 NM_002827 ENSG00000196396 PTPN1 PTP1B protein tyrosine phosphatase non-receptor type 1 protein-coding 275-400 chrX 95280683 95280845 + 2 NA Intergenic Intergenic -217538 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 290-274 chr3 39479250 39479502 + 2 NA intron (NR_103506, intron 1 of 2) intron (NR_103506, intron 1 of 2) 11696 NR_103506 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 499-52 chr12 16242116 16242610 + 2 NA intron (NM_001170798, intron 4 of 8) intron (NM_001170798, intron 4 of 8) 35322 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 372-447 chr6 163605993 163606216 + 2 NA Intergenic AluJb|SINE|Alu 65380 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 203-63 chr14 62644597 62644771 + 2 NA Intergenic Intergenic 400774 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 450-249 chr5 125215580 125215892 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 178905 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 372-375 chr4 113566609 113566871 + 2 NA intron (NM_001221, intron 4 of 18) L2a|LINE|L2 194998 NM_001321572 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 366-222 chr2 143320038 143320370 + 2 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 190785 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 345-424 chr5 72937746 72938076 + 2 NA Intergenic Intergenic -18130 NM_001146032 115548 Hs.165762 NM_138782 ENSG00000157107 FCHO2 - FCH domain only 2 protein-coding 189-108 chr2 239423994 239424139 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 22318 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 260-53 chr10 60540316 60540483 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 32557 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 477-38 chr10 56551461 56551774 + 2 NA Intergenic Intergenic -190344 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 328-192 chr16 12696985 12697213 + 2 NA intron (NM_001099455, intron 2 of 2) AluSx|SINE|Alu -23222 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 370-361 chr5 5928766 5929053 + 2 NA Intergenic Intergenic 408383 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 241-16 chr1 113835993 113836203 + 2 NA intron (NM_012411, intron 11 of 18) intron (NM_012411, intron 11 of 18) -20537 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 184-141 chr6 74909956 74910088 + 2 NA Intergenic MIR|SINE|MIR 218760 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 472-118 chr17 16550661 16551019 + 2 NA 3' UTR (NM_001346167, exon 6 of 6) 3' UTR (NM_001346167, exon 6 of 6) 18364 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 385-401 chr9 17269835 17270130 + 2 NA intron (NM_001365029, intron 5 of 25) L1M5|LINE|L1 134942 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 547-267 chrX 67752077 67752494 + 2 NA Intergenic L1MD1|LINE|L1 207662 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 320-430 chr5 30207449 30207613 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 326971 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 242-375 chr7 89213841 89214026 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -418196 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 213-183 chr3 128658810 128658965 + 2 NA Intergenic Intergenic -8069 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 552-100 chr2 43683942 43684454 + 2 NA intron (NM_172069, intron 3 of 29) L1MC1|LINE|L1 -7769 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 520-240 chr5 92102960 92103421 + 2 NA Intergenic L1ME2|LINE|L1 -719873 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 494-95 chr17 69922706 69923164 + 2 NA Intergenic AluSx|SINE|Alu -38772 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 329-309 chr2 213595802 213596021 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -162156 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 325-291 chr2 184769696 184769923 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 171280 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 472-57 chr12 26646388 26646676 + 2 NA intron (NM_002223, intron 21 of 56) intron (NM_002223, intron 21 of 56) 186662 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 192-33 chr10 133097598 133097748 + 2 NA intron (NM_001083909, intron 3 of 6) intron (NM_001083909, intron 3 of 6) -4573 NM_001291085 84435 Hs.435183 NM_032422 ENSG00000197177 ADGRA1 GPR123 adhesion G protein-coupled receptor A1 protein-coding 166-36 chr16 55596623 55596763 + 2 NA Intergenic L1PA15|LINE|L1 30009 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 CSS2 calpain small subunit 2 protein-coding 247-253 chr3 24656551 24656728 + 2 NA Intergenic L1MEg|LINE|L1 -160931 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 197-107 chr2 154848949 154849110 + 2 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 150334 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 418-292 chr8 114938041 114938266 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 729860 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 199-161 chr3 78252381 78252526 + 2 NA Intergenic L1MDa|LINE|L1 -203490 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 328-110 chr12 61334779 61334985 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 857957 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 523-203 chr4 90194320 90194822 + 2 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -40460 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 386-52 chr11 43231023 43231402 + 2 NA Intergenic MIRc|SINE|MIR 38157 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 257-425 chr8 127501881 127502103 + 2 NA Intergenic Intergenic -19853 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 261-262 chr3 168494299 168494513 + 2 NA intron (NR_021485, intron 3 of 15) intron (NR_021485, intron 3 of 15) -57448 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 316-223 chr18 21811009 21811254 + 2 NA intron (NM_020774, intron 10 of 20) L1MB3|LINE|L1 14654 NR_029675 406922 NR_029675 ENSG00000283927 MIR133A1 MIRN133A1|mir-133a-1 microRNA 133a-1 ncRNA 324-372 chr3 174052899 174053210 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -132258 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 486-320 chrX 43898755 43899144 + 2 NA Intergenic Intergenic -16499 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 561-167 chr5 107692082 107692474 + 2 NA Intergenic L1MA3|LINE|L1 -21341 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 311-333 chr3 28079757 28080028 + 2 NA Intergenic LTR81|LTR|Gypsy -161727 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 376-141 chr17 64707364 64707664 + 2 NA Intergenic Intergenic -45207 NM_022739 64750 Hs.515011 NM_022739 ENSG00000108854 SMURF2 - SMAD specific E3 ubiquitin protein ligase 2 protein-coding 338-177 chr15 27813629 27813876 + 2 NA intron (NM_001300984, intron 22 of 22) intron (NM_001300984, intron 22 of 22) 285563 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 344-280 chr20 45627315 45627530 + 2 NA intron (NM_147198, intron 1 of 4) L1MA5A|LINE|L1 -2317 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 249-33 chr1 235730781 235730977 + 2 NA exon (NM_001301365, exon 36 of 53) exon (NM_001301365, exon 36 of 53) -80125 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 449-6 chr1 87768254 87768582 + 2 NA Intergenic L1MEd|LINE|L1 -396763 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 334-177 chr15 69239413 69239603 + 2 NA intron (NM_001324092, intron 2 of 3) MLT1J|LTR|ERVL-MaLR -59404 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 241-143 chr17 58826415 58826599 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 70638 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 271-420 chr8 9745854 9746051 + 2 NA intron (NM_003747, intron 17 of 26) intron (NM_003747, intron 17 of 26) 4280 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 322-535 chr8 97004610 97004804 + 2 NA intron (NM_016134, intron 5 of 7) L1ME4c|LINE|L1 273221 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 497-303 chr9 107788407 107788795 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -298832 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 690-98 chr8 88585399 88585893 + 2 NA Intergenic L1M1|LINE|L1 -258163 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 377-389 chr8 36647879 36648148 + 2 NA Intergenic Intergenic -136361 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 359-412 chr5 158270508 158270817 + 2 NA Intergenic MIRc|SINE|MIR 139111 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 347-340 chr4 42973349 42973554 + 2 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 80185 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 262-202 chr2 62446677 62446866 + 2 NA Intergenic Intergenic 59424 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 335-514 chr7 108894468 108894658 + 2 NA Intergenic Intergenic -9976 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 542-169 chr5 87053341 87053868 + 2 NA Intergenic AluY|SINE|Alu 61350 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 521-153 chr22 34052427 34052760 + 2 NA Intergenic L2b|LINE|L2 -129705 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 489-184 chr4 18389470 18389898 + 2 NA Intergenic Intergenic -367809 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 332-131 chr12 118882636 118882834 + 2 NA Intergenic L1MB7|LINE|L1 -49199 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 425-15 chr1 181927005 181927384 + 2 NA Intergenic MER72B|LTR|ERV1 134518 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 575-128 chr3 179866018 179866514 + 2 NA intron (NR_146167, intron 6 of 13) intron (NR_146167, intron 6 of 13) -31928 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 653-88 chr3 106259427 106259989 + 2 NA Intergenic MER61-int|LTR|ERV1 -390307 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 323-398 chr5 18592364 18592621 + 2 NA Intergenic Intergenic 785218 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 563-82 chr19 49368671 49369171 + 2 NA non-coding (NR_110729, exon 3 of 3) non-coding (NR_110729, exon 3 of 3) 5044 NM_014419 27120 Hs.515855 NM_014419 ENSG00000104901 DKKL1 CT34|SGY|SGY-1|SGY1 dickkopf like acrosomal protein 1 protein-coding 352-227 chr2 37101730 37101936 + 2 NA 3' UTR (NM_001135651, exon 17 of 17) 3' UTR (NM_001135651, exon 17 of 17) 17382 NM_001278505 253635 Hs.595250 NM_174931 ENSG00000152133 GPATCH11 CCDC75|CENP-Y|CENPY G-patch domain containing 11 protein-coding 538-27 chr10 43471515 43471897 + 2 NA intron (NM_001355446, intron 2 of 4) LTR28|LTR|ERV1 34595 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 228-226 chr3 157466244 157466441 + 2 NA intron (NM_024621, intron 3 of 13) intron (NM_024621, intron 3 of 13) 29164 NM_001167917 79674 Hs.658046 NM_024621 ENSG00000197415 VEPH1 MELT|VEPH ventricular zone expressed PH domain containing 1 protein-coding 332-318 chr3 30217320 30217499 + 2 NA Intergenic Intergenic -283253 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 434-157 chr2 143535933 143536294 + 2 NA intron (NM_018460, intron 10 of 13) L1MA8|LINE|L1 -400954 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 295-13 chr1 112934631 112934819 + 2 NA intron (NM_003051, intron 1 of 4).2 GA-rich|Low_complexity|Low_complexity 11375 NR_002796 246182 Hs.647691 NR_002796 AKR7A2P1 AFARP1 aldo-keto reductase family 7 member A2 pseudogene 1 pseudo 307-70 chr10 100522562 100522826 + 2 NA Intergenic Intergenic -2833 NM_015490 25956 Hs.18889 NM_015490 ENSG00000075826 SEC31B SEC31B-1|SEC31L2 SEC31 homolog B, COPII coat complex component protein-coding 221-41 chr10 86008717 86008892 + 2 NA intron (NM_017551, intron 4 of 15) L1ME3G|LINE|L1 255984 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 412-129 chr18 6385562 6385850 + 2 NA intron (NM_001365765, intron 1 of 18) intron (NM_001365765, intron 1 of 18) -11281 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 329-19 chr1 158322049 158322360 + 2 NA Intergenic L1M1|LINE|L1 9327 NM_001764 910 Hs.1310 NM_001764 ENSG00000158485 CD1B CD1|CD1A|R1 CD1b molecule protein-coding 307-59 chr10 62868605 62868905 + 2 NA Intergenic MIRb|SINE|MIR -49588 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 483-218 chr5 144519525 144519849 + 2 NA Intergenic L2c|LINE|L2 314296 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 205-77 chr14 34125922 34126094 + 2 NA Intergenic Intergenic -174934 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 228-312 chr7 22184009 22184195 + 2 NA intron (NM_001367603, intron 1 of 5) intron (NM_001367603, intron 1 of 5) 9643 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 460-194 chr3 62930450 62930723 + 2 NA Intergenic Intergenic -55170 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 289-97 chr12 20396188 20396452 + 2 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) 27075 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 276-189 chr17 52410627 52410800 + 2 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 20191 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 678-94 chr6 42803067 42803565 + 2 NA intron (NM_001318819, intron 2 of 13) intron (NM_001318819, intron 2 of 13) -17740 NM_015349 23506 Hs.658033 NM_015349 ENSG00000112624 BICRAL GLTSCR1L|KIAA0240 BRD4 interacting chromatin remodeling complex associated protein like protein-coding 485-237 chr5 147024371 147024788 + 2 NA intron (NM_001271900, intron 2 of 10) L1ME1|LINE|L1 31558 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 363-360 chr5 61565136 61565384 + 2 NA Intergenic Intergenic -72500 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 194-222 chr9 25508660 25508804 + 2 NA Intergenic Intergenic 170126 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 291-481 chr8 139845306 139845477 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -142268 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 313-41 chr10 35254208 35254432 + 2 NA intron (NM_181698, intron 3 of 11) Cheshire|DNA|hAT-Charlie 7295 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 360-402 chr6 54749334 54749614 + 2 NA Intergenic MIR|SINE|MIR -97297 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 300-299 chr3 174044749 174045033 + 2 NA intron (NM_001365928, intron 4 of 6) THE1C|LTR|ERVL-MaLR -124095 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 232-237 chr3 51915201 51915384 + 2 NA Intergenic Intergenic -11939 NM_152397 132141 Hs.671210 NM_152397 ENSG00000173389 IQCF1 - IQ motif containing F1 protein-coding 490-293 chr8 87711095 87711486 + 2 NA Intergenic Intergenic 162725 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 273-117 chr13 51133384 51133557 + 2 NA intron (NR_102431, intron 1 of 4) L1MB3|LINE|L1 -22242 NM_001351589 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 342-313 chr3 60794744 60795040 + 2 NA intron (NR_148921, intron 4 of 4) L1ME4b|LINE|L1 -177022 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 274-94 chr12 44728871 44729031 + 2 NA intron (NM_006159, intron 10 of 20) L1MB1|LINE|L1 146710 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 361-116 chr12 104546806 104547014 + 2 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) -44723 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 331-474 chr6 150837596 150837863 + 2 NA intron (NM_001329803, intron 13 of 13) intron (NM_001329803, intron 13 of 13) -27950 NR_146719 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 412-170 chr2 143586359 143586588 + 2 NA intron (NM_018460, intron 11 of 13) L1M7|LINE|L1 -350594 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 600-91 chr4 39239165 39239692 + 2 NA intron (NM_025132, intron 20 of 36) intron (NM_025132, intron 20 of 36) 56899 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 379-313 chr7 28158321 28158526 + 2 NA intron (NM_175061, intron 1 of 4) intron (NM_175061, intron 1 of 4) -22034 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 563-3 chr1 70753066 70753423 + 2 NA intron (NR_125938, intron 5 of 6) L1PA13|LINE|L1 46791 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 501-37 chr11 63276797 63277110 + 2 NA Intergenic L1PA15-16|LINE|L1 -12950 NM_001039752 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 300-23 chr1 193965384 193965661 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 660777 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 320-519 chr7 108428332 108428639 + 2 NA intron (NM_001371132, intron 1 of 30) intron (NM_001371132, intron 1 of 30) 27912 NM_001193584 4897 Hs.21422 NM_005010 ENSG00000091129 NRCAM - neuronal cell adhesion molecule protein-coding 341-513 chr8 34708427 34708640 + 2 NA Intergenic LTR16D|LTR|ERVL -75388 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 432-303 chr9 131555230 131555492 + 2 NA intron (NM_001365666, intron 2 of 3) intron (NM_001365666, intron 2 of 3) 9838 NM_001365666 642515 NM_001365666 ENSG00000283526 PRRT1B DSPD2|IFITMD8 proline rich transmembrane protein 1B protein-coding 558-102 chr2 121880772 121881193 + 2 NA Intergenic Intergenic 125331 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 321-325 chr20 7665994 7666310 + 2 NA Intergenic Intergenic 274306 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 502-181 chr3 90475180 90475586 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1367762 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 381-119 chr16 13641843 13642161 + 2 NA Intergenic Intergenic -278155 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 292-83 chr11 94109136 94109356 + 2 NA intron (NM_001098672, intron 17 of 19) L1ME1|LINE|L1 -19595 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 210-44 chr11 58216389 58216570 + 2 NA TTS (NM_001004458) TTS (NM_001004458) 1734 NM_001004458 219959 Hs.553645 NM_001004458 ENSG00000280204 OR1S1 OR11-232|OST034 olfactory receptor family 1 subfamily S member 1 (gene/pseudogene) protein-coding 315-5 chr1 34330611 34330837 + 2 NA Intergenic Intergenic 153817 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 433-238 chr5 179436759 179437078 + 2 NA Intergenic MIR|SINE|MIR 79793 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 471-241 chr6 158988417 158988773 + 2 NA intron (NR_144434, intron 2 of 8) L1M3f|LINE|L1 11592 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 188-192 chr7 55120992 55121167 + 2 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 11240 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 308-321 chr4 36606001 36606248 + 2 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 35776 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 314-558 chr8 53183281 53183509 + 2 NA Intergenic L1MEc|LINE|L1 68242 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 342-219 chr2 7929852 7930116 + 2 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) -30329 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 229-195 chr2 118627007 118627154 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -24114 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 151-10 chr1 241764610 241764697 + 2 NA intron (NM_001367482, intron 15 of 27) AluJr|SINE|Alu -83538 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 326-344 chr3 98388170 98388366 + 2 NA Intergenic Intergenic -2398 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 379-12 chr1 87561989 87562230 + 2 NA Intergenic Intergenic -190454 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 696-2 chr1 40485207 40485709 + 2 NA intron (NM_001320178, intron 3 of 5) L1MEf|LINE|L1 8168 NM_198494 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 315-465 chr8 32073809 32074095 + 2 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 47734 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 198-76 chr16 8689551 8689736 + 2 NA intron (NM_020686, intron 1 of 15) L2c|LINE|L2 15026 NM_020686 18 Hs.336768 NM_000663 ENSG00000183044 ABAT GABA-AT|GABAT|NPD009 4-aminobutyrate aminotransferase protein-coding 304-556 chr9 110958346 110958524 + 2 NA intron (NM_001351417, intron 4 of 5) L1MA4A|LINE|L1 78345 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 210-94 chr16 47857938 47858069 + 2 NA promoter-TSS (NR_110650) promoter-TSS (NR_110650) -578 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 287-360 chr6 114322287 114322504 + 2 NA intron (NR_125845, intron 9 of 9) intron (NR_125845, intron 9 of 9) -259518 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 331-153 chr14 53461188 53461410 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 307945 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 278-455 chr9 84911284 84911539 + 2 NA intron (NM_001018064, intron 13 of 17) L1MD1|LINE|L1 205510 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 239-54 chr11 29092152 29092321 + 2 NA Intergenic Intergenic -502177 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 567-196 chr8 135126170 135126554 + 2 NA Intergenic Intergenic -107769 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 401-241 chr4 158090154 158090438 + 2 NA Intergenic Intergenic -80456 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 183-24 chr11 63265635 63265777 + 2 NA Intergenic Intergenic -24197 NM_001039752 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 160-92 chr6 42196797 42196888 + 2 NA Intergenic L2|LINE|L2 -1886 NM_002098 2979 Hs.446529 NM_002098 ENSG00000112599 GUCA1B GCAP 2|GCAP2|GUCA2|RP48 guanylate cyclase activator 1B protein-coding 349-355 chr3 187961320 187961575 + 2 NA intron (NR_135538, intron 2 of 2) L2a|LINE|L2 14960 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 412-39 chr10 104133179 104133427 + 2 NA intron (NM_025145, intron 35 of 37) intron (NM_025145, intron 35 of 37) 11132 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 347-292 chr3 3417677 3417854 + 2 NA Intergenic Intergenic -238048 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 356-81 chr11 50396889 50397173 + 2 NA Intergenic ALR/Alpha|Satellite|centr -12116 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 505-39 chr10 111507308 111507661 + 2 NA Intergenic Intergenic 393193 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 229-319 chr5 136606308 136606499 + 2 NA Intergenic Intergenic -240927 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 362-255 chr22 25718838 25719154 + 2 NA intron (NM_001362778, intron 18 of 19) MER2|DNA|TcMar-Tigger -23192 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 469-74 chr12 133177664 133178067 + 2 NA Intergenic L1PB4|LINE|L1 -3630 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 370-233 chr2 67973941 67974188 + 2 NA Intergenic L1MA2|LINE|L1 88940 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 347-95 chr12 62455278 62455471 + 2 NA Intergenic Intergenic -11452 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 245-83 chr11 95102843 95103043 + 2 NA intron (NM_015036, intron 1 of 1) intron (NM_015036, intron 1 of 1) 13097 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 305-557 chr9 11270361 11270659 + 2 NA Intergenic Intergenic 657304 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 363-129 chr14 30094943 30095242 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -167245 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 568-77 chr17 2653362 2653814 + 2 NA intron (NM_000430, intron 2 of 10) Charlie15b|DNA|hAT-Charlie 39331 NR_106834 102465465 NR_106834 ENSG00000273606 MIR6776 hsa-mir-6776 microRNA 6776 ncRNA 202-227 chr6 131673684 131673833 + 2 NA intron (NR_133007, intron 7 of 23) MER2|DNA|TcMar-Tigger 27643 NM_030908 79541 Hs.486488 NM_030908 ENSG00000180658 OR2A4 OR2A10 olfactory receptor family 2 subfamily A member 4 protein-coding 368-143 chr14 60538368 60538672 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 29374 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 312-374 chr4 65354162 65354324 + 2 NA intron (NM_001281767, intron 12 of 16) intron (NM_001281767, intron 12 of 16) 315245 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 276-147 chr14 59645184 59645370 + 2 NA intron (NM_021136, intron 3 of 8) L1PA8|LINE|L1 1743 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 680-23 chr11 24045331 24045851 + 2 NA Intergenic L1M4c|LINE|L1 -451462 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 309-551 chr8 98950376 98950656 + 2 NA intron (NM_001142462, intron 2 of 3) intron (NM_001142462, intron 2 of 3) 6074 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 311-356 chr3 168897726 168897958 + 2 NA Intergenic L1MDa|LINE|L1 -4103 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 205-50 chr11 27306238 27306400 + 2 NA Intergenic L1MEd|LINE|L1 56896 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 376-154 chr18 60516015 60516374 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -143419 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 532-172 chr3 118090846 118091312 + 2 NA Intergenic L1MD2|LINE|L1 -400154 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 570-72 chr15 95331648 95332063 + 2 NA Intergenic Intergenic -4755 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 569-59 chr14 72622759 72623107 + 2 NA intron (NM_001280542, intron 9 of 10) L1MC5|LINE|L1 106113 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 278-77 chr12 96650403 96650563 + 2 NA intron (NM_001306084, intron 35 of 67) intron (NM_001306084, intron 35 of 67) 160906 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 238-335 chr6 123567816 123567994 + 2 NA intron (NM_001256020, intron 2 of 8) MSTA-int|LTR|ERVL-MaLR 69045 NM_001256020 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 189-171 chr6 9752450 9752611 + 2 NA Intergenic Intergenic -651972 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 199-84 chr18 2175139 2175298 + 2 NA Intergenic Intergenic 396287 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 659-114 chr8 79346739 79347193 + 2 NA Intergenic Intergenic 14778 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 319-392 chr4 173802976 173803218 + 2 NA Intergenic Intergenic -94176 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 313-339 chr3 53528888 53529107 + 2 NA intron (NM_001128840, intron 3 of 47) L1M5|LINE|L1 34386 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 284-353 chr6 84165179 84165424 + 2 NA intron (NM_001286206, intron 18 of 26) intron (NM_001286206, intron 18 of 26) 62342 NM_001286206 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 367-257 chr21 22548914 22549271 + 2 NA Intergenic Intergenic 450475 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 130-18 chr12 33808970 33809060 + 2 NA Intergenic Intergenic -213481 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 187-10 chr1 85199139 85199249 + 2 NA intron (NM_032184, intron 1 of 6) intron (NM_032184, intron 1 of 6) 1822 NM_032184 84144 Hs.533853 NM_032184 ENSG00000097096 SYDE2 - synapse defective Rho GTPase homolog 2 protein-coding 331-5 chr1 68328442 68328749 + 2 NA Intergenic Intergenic -96049 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 480-119 chr18 13175048 13175506 + 2 NA Intergenic Intergenic -43483 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 570-101 chr2 13261359 13261892 + 2 NA Intergenic Intergenic -254612 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 469-63 chr12 37889041 37889353 + 2 NA Intergenic ALR/Alpha|Satellite|centr -427577 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 314-271 chr2 36649382 36649644 + 2 NA Intergenic Intergenic -47177 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 335-354 chr3 95151052 95151264 + 2 NA Intergenic Intergenic 212895 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 294-30 chr10 17343873 17344139 + 2 NA intron (NM_001004470, intron 4 of 7) MIR|SINE|MIR -42930 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 304-498 chr8 30880480 30880712 + 2 NA intron (NR_146525, intron 2 of 6) Tigger2a|DNA|TcMar-Tigger 8110 NR_146525 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 543-46 chr11 1909596 1909974 + 2 NA Intergenic AluJb|SINE|Alu -9918 NM_001363561 7140 Hs.73454 NM_006757 ENSG00000130595 TNNT3 DA2B2|TNTF|beta-TnTF troponin T3, fast skeletal type protein-coding 304-178 chr16 50931823 50932055 + 2 NA intron (NR_039672, intron 2 of 6) MIRb|SINE|MIR 53166 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 936-4 chr10 34923985 34924648 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 108548 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 367-388 chr6 45871206 45871563 + 2 NA Intergenic MIRb|SINE|MIR 66213 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 243-168 chr17 62758392 62758558 + 2 NA intron (NM_001288779, intron 4 of 11) intron (NM_001288779, intron 4 of 11) 48165 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 216-142 chr18 10136767 10136953 + 2 NA Intergenic MIR|SINE|MIR 222844 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 393-112 chr15 94187773 94188055 + 2 NA Intergenic L1MA1|LINE|L1 -79976 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 586-137 chr6 151926610 151927102 + 2 NA intron (NM_001122741, intron 4 of 8) L1PREC2|LINE|L1 117749 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 223-328 chr7 138104067 138104238 + 2 NA intron (NM_001190906, intron 4 of 7) L1M5|LINE|L1 -19606 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 331-432 chr5 113705155 113705412 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 191589 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 507-5 chr1 59676490 59676895 + 2 NA intron (NM_001350790, intron 15 of 16) intron (NM_001350790, intron 15 of 16) 56604 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 329-397 chr4 24813138 24813354 + 2 NA intron (NM_001130726, intron 11 of 11) MLT1A|LTR|ERVL-MaLR 17673 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 343-541 chr8 84203016 84203315 + 2 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 18499 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 189-140 chr4 44356925 44357107 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 91793 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 281-243 chr2 210963219 210963400 + 2 NA Intergenic L1ME3E|LINE|L1 345738 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 338-564 chr8 129552892 129553156 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 21994 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 431-208 chr4 101854496 101854840 + 2 NA intron (NM_017935, intron 2 of 16) intron (NM_017935, intron 2 of 16) 40826 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 341-14 chr1 66078009 66078190 + 2 NA intron (NM_001037340, intron 1 of 14) MIRb|SINE|MIR -27381 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 506-102 chr16 35442674 35443138 + 2 NA Intergenic Intergenic 37690 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 398-144 chr19 23741000 23741302 + 2 NA 3' UTR (NM_138286, exon 4 of 4) 3' UTR (NM_138286, exon 4 of 4) 17740 NM_138286 148213 Hs.399952 NM_138286 ENSG00000196172 ZNF681 - zinc finger protein 681 protein-coding 206-227 chr5 170314311 170314457 + 2 NA Intergenic MIRb|SINE|MIR -1668 NR_147701 100128059 Hs.587351 NR_147701 ENSG00000250274 LOC100128059 - uncharacterized LOC100128059 ncRNA 183-48 chr14 66483358 66483486 + 2 NA Intergenic Intergenic -2949 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 363-444 chr8 90136554 90136844 + 2 NA Intergenic L2c|LINE|L2 -53820 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 274-417 chrX 21171252 21171486 + 2 NA Intergenic L1M4|LINE|L1 -203049 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 257-263 chr3 40140882 40141098 + 2 NA intron (NM_001284426, intron 1 of 14) L1MA2|LINE|L1 40979 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 329-613 chr9 108615416 108615699 + 2 NA Intergenic Intergenic 240429 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 288-254 chr3 34164448 34164668 + 2 NA Intergenic Intergenic 365928 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 329-37 chr1 233048935 233049218 + 2 NA intron (NM_014801, intron 25 of 33) L1PA16|LINE|L1 98234 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 264-49 chr10 64168114 64168285 + 2 NA Intergenic L1MB2|LINE|L1 -646309 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 342-381 chr5 15476030 15476279 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -24026 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 213-146 chr2 119092853 119093052 + 2 NA Intergenic L1MEf|LINE|L1 65799 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 640-108 chr5 27995183 27995705 + 2 NA Intergenic Intergenic 292221 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 454-302 chr7 143966909 143967316 + 2 NA Intergenic Intergenic 7185 NM_012369 26211 Hs.553595 NM_012369 ENSG00000213215 OR2F1 7M1-2|OLF3|OR14-60|OR2F3|OR2F3P|OR2F4|OR2F5|OR7-139|OR7-140 olfactory receptor family 2 subfamily F member 1 (gene/pseudogene) protein-coding 129-56 chr3 89678562 89678668 + 2 NA Intergenic L2a|LINE|L2 570994 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 329-502 chr6 80333757 80333940 + 2 NA intron (NR_134945, intron 10 of 10) intron (NR_134945, intron 10 of 10) 227177 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 293-254 chr3 22430698 22430953 + 2 NA Intergenic (TATTT)n|Simple_repeat|Simple_repeat 473686 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 351-190 chr18 75028148 75028364 + 2 NA intron (NM_017757, intron 7 of 7) MLT1B|LTR|ERVL-MaLR 177257 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 348-167 chr16 22793310 22793493 + 2 NA Intergenic L1ME4a|LINE|L1 -20761 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 282-367 chr5 23693381 23693633 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 185852 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 343-504 chr7 45503350 45503555 + 2 NA Intergenic Intergenic -70688 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 349-32 chr1 192116685 192116925 + 2 NA Intergenic Intergenic -41657 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 397-77 chr14 25336823 25337194 + 2 NA Intergenic L1MA4A|LINE|L1 -286711 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 352-224 chr2 34570963 34571264 + 2 NA Intergenic Intergenic -106444 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 512-98 chr16 79890336 79890681 + 2 NA Intergenic Intergenic 95259 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 305-11 chr1 69378449 69378703 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -54679 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 544-81 chr16 12219366 12219750 + 2 NA intron (NM_032167, intron 14 of 20) intron (NM_032167, intron 14 of 20) 242824 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 236-368 chr8 127694013 127694189 + 2 NA Intergenic Intergenic 39866 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 251-214 chr21 34294926 34295141 + 2 NA Intergenic Intergenic -68991 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 436-172 chr22 22846682 22846955 + 2 NA Intergenic MER34|LTR|ERV1 24042 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 172-102 chr5 45221700 45221795 + 2 NA Intergenic Intergenic 412800 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 564-203 chr8 131671177 131671525 + 2 NA Intergenic L1ME3A|LINE|L1 -232742 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 354-343 chr4 98147289 98147474 + 2 NA Intergenic L1M5|LINE|L1 -3905 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 248-39 chr10 58459575 58459762 + 2 NA Intergenic MIRb|SINE|MIR -53204 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 427-52 chr12 63019330 63019712 + 2 NA Intergenic MIR|SINE|MIR -84371 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 282-66 chr11 29929324 29929589 + 2 NA Intergenic Intergenic 52937 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 339-193 chr16 49009904 49010230 + 2 NA Intergenic Intergenic 271771 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 143-69 chr5 122326389 122326462 + 2 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) 14188 NM_001308107 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 355-358 chr4 44905764 44905976 + 2 NA Intergenic Intergenic -179236 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 442-118 chr19 52058054 52058405 + 2 NA 3' UTR (NM_001352299, exon 8 of 8) 3' UTR (NM_001352299, exon 8 of 8) -9391 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 387-384 chr9 22749789 22750097 + 2 NA intron (NR_038977, intron 4 of 5) intron (NR_038977, intron 4 of 5) 103743 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 313-103 chr12 13849883 13850183 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 130323 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 287-160 chr17 33353681 33353920 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -60812 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 545-86 chr16 71403840 71404226 + 2 NA Intergenic Intergenic 22431 NR_146574 105371333 Hs.578738 NR_146574 ENSG00000261348 LINC02136 - long intergenic non-protein coding RNA 2136 ncRNA 209-51 chr11 5239504 5239670 + 2 NA Intergenic L2c|LINE|L2 4005 NR_001589 3044 Hs.20205 NR_001589 HBBP1 HBH1|HBHP hemoglobin subunit beta pseudogene 1 pseudo 207-132 chr2 50236013 50236185 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 111655 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 307-328 chr4 15273068 15273353 + 2 NA intron (NR_125911, intron 1 of 5) L1MA3|LINE|L1 -66778 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 297-466 chr8 78347494 78347744 + 2 NA Intergenic L1ME1|LINE|L1 -168721 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 251-157 chr2 13068484 13068631 + 2 NA Intergenic MER66-int|LTR|ERV1 -61544 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 321-26 chr1 173014927 173015087 + 2 NA Intergenic L3|LINE|CR1 35956 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 271-364 chr5 171023874 171024098 + 2 NA intron (NM_022897, intron 14 of 27) L1MEf|LINE|L1 161968 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 314-292 chr2 104597588 104597784 + 2 NA Intergenic MER21C|LTR|ERVL -87177 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 376-324 chr5 80258325 80258570 + 2 NA Intergenic AluSg|SINE|Alu -2399 NM_001174071 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 303-489 chr9 28050109 28050276 + 2 NA intron (NM_152570, intron 5 of 6) L2|LINE|L2 -476326 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 225-208 chr3 77203176 77203392 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 105272 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 430-241 chr5 44305224 44305463 + 2 NA intron (NM_004465, intron 2 of 2) intron (NM_004465, intron 2 of 2) -83389 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 315-225 chr2 23197718 23198006 + 2 NA Intergenic L1M4a1|LINE|L1 -187317 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 322-331 chr3 89779004 89779234 + 2 NA Intergenic Intergenic 671498 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 262-63 chr10 107427939 107428128 + 2 NA Intergenic L1MA6|LINE|L1 -263327 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 424-191 chr4 58794775 58795175 + 2 NA Intergenic Intergenic -189307 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 272-9 chr1 74125856 74126102 + 2 NA intron (NM_001105659, intron 4 of 7) L1MA3|LINE|L1 72197 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 270-214 chr21 14174743 14174912 + 2 NA intron (NM_198996, intron 4 of 9) AluSx3|SINE|Alu 32122 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 431-126 chr2 41731011 41731329 + 2 NA Intergenic (TT)n|Simple_repeat|Simple_repeat -146385 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 371-70 chr11 79668505 79668826 + 2 NA Intergenic Intergenic -227635 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 379-212 chr3 42428493 42428791 + 2 NA Intergenic Intergenic -18032 NM_144634 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 321-540 chr8 19695768 19695976 + 2 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) -13111 NR_024040 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 245-32 chr10 15440735 15440940 + 2 NA Intergenic MIR|SINE|MIR -69548 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 291-105 chr12 111126409 111126678 + 2 NA intron (NM_001370598, intron 1 of 21) MLT2B4|LTR|ERVL 26539 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 535-205 chr5 127264446 127264973 + 2 NA Intergenic Intergenic -26055 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 231-337 chr7 96349997 96350155 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -27929 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 357-178 chr19 23931762 23931941 + 2 NA intron (NM_001348687, intron 3 of 3) intron (NM_001348687, intron 3 of 3) 16965 NM_001244038 730087 Hs.655305 NM_001190829 ENSG00000213967 ZNF726 ZNF92P3 zinc finger protein 726 protein-coding 210-163 chr22 25818460 25818614 + 2 NA intron (NM_001318245, intron 12 of 43) MIRb|SINE|MIR 76349 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 328-378 chr3 179938712 179938956 + 2 NA intron (NM_001349396, intron 1 of 13) intron (NM_001349396, intron 1 of 13) 35391 NM_001349406 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 501-278 chr9 78684726 78685160 + 2 NA Intergenic Intergenic 387818 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 590-97 chr22 34465673 34466023 + 2 NA Intergenic Intergenic 532068 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 436-24 chr1 233742296 233742626 + 2 NA Intergenic L1ME2|LINE|L1 118309 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 265-286 chr4 145081366 145081579 + 2 NA intron (NM_001256706, intron 3 of 4) intron (NM_001256706, intron 3 of 4) 15910 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 203-213 chr7 14039996 14040188 + 2 NA Intergenic Intergenic -48667 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 536-181 chr5 12028935 12029311 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -124677 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 558-4 chr1 39647792 39648229 + 2 NA Intergenic Intergenic -8367 NM_014571 26508 Hs.472566 NM_014571 ENSG00000163909 HEYL HESR3|HEY3|HRT3|bHLHb33 hes related family bHLH transcription factor with YRPW motif like protein-coding 344-168 chr16 9339584 9339824 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -15884 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 336-556 chr8 123579868 123580098 + 2 NA Intergenic Intergenic -38777 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 299-41 chr10 18067407 18067641 + 2 NA Intergenic L1M4|LINE|L1 -56962 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 336-186 chr15 101231583 101231836 + 2 NA intron (NM_014918, intron 2 of 2) L1ME3A|LINE|L1 20339 NM_014918 22856 Hs.110488 NM_014918 ENSG00000131873 CHSY1 CHSY|CSS1|ChSy-1|TPBS chondroitin sulfate synthase 1 protein-coding 295-53 chr10 89338165 89338362 + 2 NA intron (NM_001289759, intron 2 of 2) MLT2B1|LTR|ERVL 5734 NM_001031683 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 223-313 chr7 14393720 14393931 + 2 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) -402400 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 368-204 chr18 11230726 11231065 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -82133 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 389-9 chr1 74848050 74848279 + 2 NA Intergenic L1PA16|LINE|L1 -114756 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 384-374 chr8 103992703 103993056 + 2 NA intron (NR_145711, intron 14 of 21) intron (NR_145711, intron 14 of 21) 173659 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 534-82 chr15 98489046 98489515 + 2 NA intron (NM_182562, intron 2 of 6) (AT)n|Simple_repeat|Simple_repeat 25056 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 376-174 chr2 45600898 45601107 + 2 NA intron (NM_018079, intron 3 of 20) MamRep605|LTR?|LTR? 10265 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 285-207 chr2 132498590 132498778 + 2 NA intron (NM_001508, intron 1 of 1) L1PB1|LINE|L1 64973 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 290-49 chr10 49017569 49017744 + 2 NA 3' UTR (NM_001031746, exon 8 of 8) 3' UTR (NM_001031746, exon 8 of 8) -32069 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 548-168 chr4 89083248 89083706 + 2 NA Intergenic Intergenic -26292 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 435-269 chr9 115150869 115151226 + 2 NA intron (NR_163556, intron 1 of 7) LTR79|LTR|ERVL 9229 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 340-584 chrX 73679375 73679641 + 2 NA intron (NM_001300884, intron 4 of 4) intron (NM_001300884, intron 4 of 4) -112697 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 448-10 chr1 104060396 104060793 + 2 NA Intergenic L2|LINE|L2 -12429 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 243-175 chr18 13682112 13682281 + 2 NA intron (NM_152352, intron 1 of 3) intron (NM_152352, intron 1 of 3) 40438 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 247-243 chr21 23040398 23040618 + 2 NA Intergenic L2a|LINE|L2 -38776 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 236-90 chr12 60189565 60189762 + 2 NA Intergenic Intergenic 500293 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 207-232 chr5 2196473 2196638 + 2 NA Intergenic Intergenic 115646 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 340-544 chr8 109693474 109693678 + 2 NA Intergenic Intergenic -1785 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 348-513 chr8 66310973 66311276 + 2 NA Intergenic Intergenic 117853 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 225-347 chr8 54902073 54902237 + 2 NA Intergenic L2a|LINE|L2 -199873 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 271-30 chr1 218620453 218620673 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 110468 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 240-335 chr4 165832610 165832757 + 2 NA Intergenic Intergenic -40554 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 456-259 chr5 118100331 118100704 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -182057 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 383-386 chr8 90159650 90159965 + 2 NA Intergenic Intergenic -61681 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 342-309 chr3 34392088 34392374 + 2 NA Intergenic L1MA4A|LINE|L1 593601 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 393-180 chr2 176895536 176895882 + 2 NA Intergenic L1MA3|LINE|L1 257955 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 201-22 chr10 11349257 11349407 + 2 NA Intergenic MER66-int|LTR|ERV1 -4658 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 357-138 chr15 98575416 98575735 + 2 NA Intergenic Intergenic -61239 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 388-141 chr18 70875756 70876113 + 2 NA Intergenic Intergenic -224980 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 547-227 chr7 133231898 133232328 + 2 NA Intergenic MamRep1151|LTR?|LTR? -20954 NM_001037126 60412 Hs.321273 NM_021807 ENSG00000131558 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 404-215 chr3 106677251 106677584 + 2 NA Intergenic Intergenic 563221 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 264-132 chr14 67161371 67161556 + 2 NA intron (NM_001024218, intron 18 of 21) intron (NM_001024218, intron 18 of 21) -27977 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 225-393 chr9 88623965 88624168 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 88888 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 370-24 chr1 204229878 204230099 + 2 NA intron (NM_014935, intron 18 of 22) MIRc|SINE|MIR -16000 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 232-167 chr2 55622461 55622689 + 2 NA Intergenic L2b|LINE|L2 -4953 NM_020463 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 400-156 chr2 45267799 45268111 + 2 NA Intergenic Intergenic -13014 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 446-328 chr9 30292745 30293020 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR 115572 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 325-533 chr8 31612255 31612547 + 2 NA Intergenic Intergenic -27351 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 179-68 chr3 80372231 80372375 + 2 NA Intergenic Intergenic -392594 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 319-103 chr11 134133339 134133581 + 2 NA intron (NM_001205329, intron 1 of 7) L1M3|LINE|L1 17903 NR_145790 109623486 NR_145790 SNORD153 - small nucleolar RNA, C/D box 153 snoRNA 793-26 chr2 13639306 13639847 + 2 NA Intergenic Intergenic -632563 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 477-237 chr5 79727598 79727943 + 2 NA intron (NM_153610, intron 1 of 12) intron (NM_153610, intron 1 of 12) 37934 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 502-25 chr10 9826787 9827143 + 2 NA Intergenic Intergenic -231757 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 327-225 chr19 37455534 37455739 + 2 NA intron (NM_001330482, intron 2 of 4) intron (NM_001330482, intron 2 of 4) 11808 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 507-156 chr22 27665328 27665711 + 2 NA Intergenic Intergenic 136237 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 396-276 chr5 37282550 37282854 + 2 NA Intergenic AluSz|SINE|Alu -33274 NM_023073 65250 Hs.586199 NM_023073 ENSG00000197603 CPLANE1 C5orf42|Hug|JBTS17|OFD6 ciliogenesis and planar polarity effector 1 protein-coding 127-4 chr1 45001908 45001997 + 2 NA TTS (NM_024602) TTS (NM_024602) 9372 NM_024602 79654 Hs.525084 NM_024602 ENSG00000126107 HECTD3 - HECT domain E3 ubiquitin protein ligase 3 protein-coding 313-222 chr19 30930176 30930447 + 2 NA Intergenic Intergenic -237199 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 119-15 chr14 82223148 82223262 + 2 NA Intergenic L1M4|LINE|L1 -419427 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 450-119 chr18 72421784 72422131 + 2 NA Intergenic Intergenic 122385 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 259-333 chr5 171854473 171854653 + 2 NA Intergenic L2c|LINE|L2 68691 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 364-186 chr18 63102550 63102826 + 2 NA Intergenic AluSz6|SINE|Alu 216692 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 265-122 chr15 75927150 75927352 + 2 NA intron (NM_012170, intron 5 of 5) LTR34|LTR|ERV1 23373 NM_147188 26263 Hs.591115 NM_012170 ENSG00000167196 FBXO22 FBX22|FISTC1 F-box protein 22 protein-coding 578-13 chr1 182453992 182454395 + 2 NA intron (NM_001366934, intron 2 of 22) intron (NM_001366934, intron 2 of 22) 4047 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 564-178 chr6 155410632 155411089 + 2 NA intron (NM_015718, intron 11 of 13) intron (NM_015718, intron 11 of 13) 44979 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 240-393 chr7 20127690 20127917 + 2 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 12623 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 340-53 chr10 71411210 71411383 + 2 NA intron (NM_052836, intron 1 of 12) L1ME3|LINE|L1 14362 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 410-134 chr2 50251044 50251302 + 2 NA intron (NM_001330093, intron 17 of 22) L1PA10|LINE|L1 96581 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 194-191 chr6 139747079 139747200 + 2 NA Intergenic Intergenic -23934 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 385-10 chr1 119700774 119701069 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -11013 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 622-86 chr3 79621327 79621765 + 2 NA intron (NM_002941, intron 1 of 30) L1PB4|LINE|L1 113659 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 346-17 chr1 114355989 114356214 + 2 NA Intergenic AluSz|SINE|Alu 155102 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 153-95 chr7 126121626 126121749 + 2 NA Intergenic Intergenic -857396 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 622-155 chrX 14163017 14163378 + 2 NA Intergenic HAL1M8|LINE|L1 -81068 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 277-49 chr10 43871987 43872228 + 2 NA intron (NR_038268, intron 3 of 4) intron (NR_038268, intron 3 of 4) 12696 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 351-298 chr3 53625742 53626023 + 2 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 131271 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 309-134 chr13 84471520 84471732 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) -312028 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 430-79 chr14 32261856 32262150 + 2 NA Intergenic L2|LINE|L2 -58734 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 279-294 chr4 59882953 59883168 + 2 NA Intergenic Intergenic 869487 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 377-96 chr12 99029601 99029971 + 2 NA intron (NM_152788, intron 17 of 25) MIRc|SINE|MIR -63573 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 351-514 chr9 38295144 38295493 + 2 NA Intergenic Intergenic -97384 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 359-310 chr3 26074859 26075211 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -201340 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 311-352 chr3 147778823 147779027 + 2 NA Intergenic Intergenic -299234 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 306-356 chr4 69587099 69587376 + 2 NA Intergenic L1MB8|LINE|L1 52405 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 250-242 chr20 44309970 44310189 + 2 NA intron (NM_001080472, intron 1 of 1) intron (NM_001080472, intron 1 of 1) 1123 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 335-545 chr8 123192501 123192781 + 2 NA intron (NM_001321630, intron 2 of 3) intron (NM_001321630, intron 2 of 3) 9976 NM_001321630 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 323-466 chr6 81760494 81760815 + 2 NA Intergenic Intergenic -7973 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 407-254 chr5 123692807 123693134 + 2 NA Intergenic L1M4|LINE|L1 147553 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 514-48 chr11 54831639 54831983 + 2 NA Intergenic ALR/Alpha|Satellite|centr 124979 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 587-152 chr7 67417724 67418149 + 2 NA Intergenic Intergenic 81960 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 309-227 chr19 42102669 42102944 + 2 NA intron (NM_001207026, intron 5 of 12) L1MC5a|LINE|L1 26640 NM_022752 64763 Hs.13323 NM_022752 ENSG00000105732 ZNF574 FP972 zinc finger protein 574 protein-coding 354-17 chr1 116081833 116082164 + 2 NA Intergenic Intergenic -29757 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 535-156 chr20 51241830 51242182 + 2 NA Intergenic Intergenic 210971 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 255-176 chr19 12546308 12546534 + 2 NA intron (NM_144976, intron 1 of 3) MER92B|LTR|ERV1 5061 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 255-375 chr6 165531743 165531914 + 2 NA intron (NM_006661, intron 3 of 22) intron (NM_006661, intron 3 of 22) 130272 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 249-152 chr17 49830374 49830598 + 2 NA 3' UTR (NM_001199158, exon 12 of 12) 3' UTR (NM_001199158, exon 12 of 12) -15424 NM_001242791 729220 Hs.434138 NM_001242791 FLJ45513 - uncharacterized LOC729220 protein-coding 330-137 chr12 133221087 133221354 + 2 NA exon (NM_001191054, exon 7 of 9) exon (NM_001191054, exon 7 of 9) 14616 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 300-438 chr7 109881789 109881971 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 78333 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 220-231 chr3 82424746 82424856 + 2 NA intron (NR_147146, intron 4 of 8) intron (NR_147146, intron 4 of 8) 438659 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 368-339 chr4 137417625 137417921 + 2 NA Intergenic L1PB4|LINE|L1 114721 NM_001300828 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 448-66 chr12 89813569 89813859 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -104348 NM_001366530 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 382-270 chr3 83425575 83425869 + 2 NA Intergenic MER34-int|LTR|ERV1 1439580 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 293-279 chr3 142951091 142951246 + 2 NA Intergenic AluJr4|SINE|Alu 12506 NM_198504 344838 Hs.408385 NM_198504 ENSG00000188582 PAQR9 - progestin and adipoQ receptor family member 9 protein-coding 594-6 chr1 147471976 147472357 + 2 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 45709 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 179-7 chr10 81748649 81748749 + 2 NA Intergenic Intergenic -126495 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 488-257 chr7 52401238 52401591 + 2 NA Intergenic Intergenic -634219 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 154-74 chr3 131262611 131262719 + 2 NA intron (NM_001353036, intron 14 of 14) intron (NM_001353036, intron 14 of 14) -99180 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 518-179 chr3 86430904 86431364 + 2 NA Intergenic Intergenic -50809 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 623-48 chr17 69161077 69161495 + 2 NA intron (NM_080282, intron 28 of 39) L1MB2|LINE|L1 -19391 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 699-68 chr22 28149202 28149703 + 2 NA intron (NM_001145418, intron 6 of 22) L1MA7|LINE|L1 -228840 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 368-86 chr11 89511450 89511711 + 2 NA intron (NM_001143837, intron 2 of 20) intron (NM_001143837, intron 2 of 20) -19361 NM_001300995 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 292-324 chr4 128213471 128213667 + 2 NA intron (NR_146772, intron 18 of 19) intron (NR_146772, intron 18 of 19) 74244 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 564-117 chr22 26884742 26885179 + 2 NA Intergenic Intergenic -18332 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 598-112 chr5 125172518 125173007 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 135931 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 136-6 chr1 231063589 231063695 + 2 NA Intergenic Intergenic -23388 NM_198552 375061 Hs.38516 NM_198552 ENSG00000182118 FAM89A C1orf153 family with sequence similarity 89 member A protein-coding 389-110 chr15 24667500 24667841 + 2 NA Intergenic MIRb|SINE|MIR -7724 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 116-40 chr6 44551977 44552057 + 2 NA promoter-TSS (NR_134609) promoter-TSS (NR_134609) -136 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 229-35 chr10 66442138 66442337 + 2 NA intron (NM_001127384, intron 11 of 17) MER2|DNA|TcMar-Tigger -483799 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 268-371 chr7 52459108 52459288 + 2 NA Intergenic Intergenic -576435 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 247-183 chr2 4882598 4882811 + 2 NA Intergenic Intergenic -226482 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 400-320 chr7 32106853 32107110 + 2 NA intron (NM_001322059, intron 3 of 17) L1MCa|LINE|L1 -35545 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 209-181 chr21 24153391 24153576 + 2 NA Intergenic Intergenic 167894 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 724-103 chr8 137912069 137912669 + 2 NA intron (NR_161374, intron 2 of 7) THE1B-int|LTR|ERVL-MaLR 171176 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 378-9 chr1 57511221 57511431 + 2 NA intron (NM_001353980, intron 4 of 5) L2a|LINE|L2 -86405 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 265-138 chr16 79744367 79744607 + 2 NA intron (NR_104663, intron 4 of 5) L1MB7|LINE|L1 -25984 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 322-428 chr5 54698667 54698969 + 2 NA intron (NR_104658, intron 1 of 2) LTR16A|LTR|ERVL 4506 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 288-214 chr2 175780529 175780810 + 2 NA Intergenic L3|LINE|CR1 221598 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 480-172 chr20 20502240 20502671 + 2 NA intron (NM_020343, intron 35 of 39) MIRb|SINE|MIR 134351 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 231-268 chr4 160627850 160628041 + 2 NA Intergenic L1MA9|LINE|L1 -850161 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 305-508 chr7 61925588 61925796 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1378364 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 236-243 chr3 185891998 185892202 + 2 NA Intergenic Intergenic 45914 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 535-31 chr10 111878728 111879108 + 2 NA Intergenic Intergenic 304847 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 513-250 chr6 96730836 96731300 + 2 NA Intergenic L1PA7|LINE|L1 106409 NM_001143957 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 245-192 chr2 82700804 82700995 + 2 NA Intergenic Intergenic -155904 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 367-408 chr7 8958153 8958336 + 2 NA Intergenic Intergenic 524635 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 648-45 chr14 80023988 80024489 + 2 NA Intergenic L1PREC2|LINE|L1 -187181 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 240-109 chr12 48432283 48432452 + 2 NA Intergenic L1M5|LINE|L1 -40298 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 460-257 chr6 46943337 46943794 + 2 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) 11374 NM_015234 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 248-17 chr1 167232280 167232450 + 2 NA intron (NM_001198786, intron 1 of 14) Tigger3b|DNA|TcMar-Tigger 11479 NM_001198786 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 421-51 chr12 32050253 32050615 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -56373 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 214-332 chr8 113162818 113162967 + 2 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 214260 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 355-177 chr16 6302749 6303059 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 283201 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 412-181 chr20 12681558 12681913 + 2 NA Intergenic Intergenic 255228 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 502-207 chr4 177750082 177750509 + 2 NA intron (NR_028342, intron 2 of 5) L1MA6|LINE|L1 21538 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 330-538 chr8 136892902 136893134 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 362220 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 600-3 chr1 74875782 74876218 + 2 NA Intergenic L1PB4|LINE|L1 -142592 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 513-206 chr4 68211524 68211831 + 2 NA intron (NR_104048, intron 2 of 9) HAL1|LINE|L1 6403 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 409-36 chr11 32042265 32042544 + 2 NA Intergenic Intergenic -1086 NR_120526 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 404-266 chr5 163740057 163740307 + 2 NA Intergenic L1MC3|LINE|L1 234563 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 200-270 chr8 84267928 84268084 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 83340 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 231 chr1 13690292 13690461 + 2 NA Intergenic MER106B|DNA|hAT-Charlie -9812 NM_001135610 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 404-233 chr4 76329566 76329857 + 2 NA intron (NM_001042784, intron 20 of 23) intron (NM_001042784, intron 20 of 23) 23685 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 209-231 chr4 108262742 108262879 + 2 NA Intergenic Intergenic 90690 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 369-318 chr5 29928108 29928352 + 2 NA Intergenic Intergenic 47670 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 404-194 chr20 19068492 19068779 + 2 NA Intergenic LTR33|LTR|ERVL -144007 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 233-136 chr18 7394144 7394357 + 2 NA Intergenic Intergenic 66756 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 321-440 chr4 171220458 171220698 + 2 NA Intergenic Intergenic 34394 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 233-19 chr1 191162408 191162569 + 2 NA Intergenic Intergenic 66010 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 495-212 chr6 38986307 38986590 + 2 NA intron (NM_001371, intron 86 of 91) intron (NM_001371, intron 86 of 91) -33341 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 482-208 chr5 122783790 122784256 + 2 NA intron (NM_001278199, intron 1 of 14) L1ME1|LINE|L1 8943 NM_003100 6643 Hs.125352 NM_003100 ENSG00000205302 SNX2 TRG-9 sorting nexin 2 protein-coding 429-185 chr22 46834791 46835081 + 2 NA intron (NM_001284305, intron 4 of 12) L1MA9|LINE|L1 61009 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 343-140 chr14 54942640 54942919 + 2 NA intron (NM_007086, intron 25 of 25) L1MD1|LINE|L1 -39953 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 233-276 chr4 128461940 128462134 + 2 NA intron (NR_125882, intron 1 of 8) intron (NR_125882, intron 1 of 8) 34021 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 164-76 chr3 53885632 53885730 + 2 NA intron (NM_021237, intron 4 of 4) intron (NM_021237, intron 4 of 4) -3529 NM_022899 93973 Hs.412186 NM_022899 ENSG00000113812 ACTR8 ARP8|INO80N|hArp8 actin related protein 8 protein-coding 342-211 chr19 37546944 37547137 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -1909 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 258-175 chr19 29368298 29368510 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -155253 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 175-152 chr7 94823186 94823348 + 2 NA Intergenic Intergenic -84327 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 421-44 chr11 90997406 90997668 + 2 NA Intergenic Intergenic -128335 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 223-80 chr14 20006946 20007072 + 2 NA Intergenic L1MDa|LINE|L1 4947 NR_145508 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 434-8 chr1 78447089 78447349 + 2 NA Intergenic Intergenic -43755 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 148-51 chr22 49097213 49097299 + 2 NA Intergenic Intergenic 230486 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 465-141 chr2 165620815 165621115 + 2 NA intron (NM_024969, intron 2 of 4) (ATTATAT)n|Simple_repeat|Simple_repeat 48629 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 354-3 chr1 31136007 31136330 + 2 NA Intergenic LTR1E|LTR|ERV1 -70451 NM_001020658 9698 Hs.281707 NM_014676 ENSG00000134644 PUM1 HSPUM|PUMH|PUMH1|PUML1|SCA47 pumilio RNA binding family member 1 protein-coding 287-422 chr8 137683914 137684168 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -270453 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 290-329 chr5 14962912 14963088 + 2 NA Intergenic L2|LINE|L2 -91222 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 595-29 chr11 50635848 50636248 + 2 NA Intergenic HERVK11-int|LTR|ERVK 226901 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 182-120 chr4 32686496 32686646 + 2 NA Intergenic Intergenic 335533 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 254-9 chr1 77428291 77428503 + 2 NA intron (NM_012093, intron 8 of 13) intron (NM_012093, intron 8 of 13) 145310 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 391-321 chr7 1413339 1413613 + 2 NA Intergenic Intergenic 45994 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 163-100 chr4 146360009 146360138 + 2 NA intron (NM_001317816, intron 4 of 10) L2c|LINE|L2 -48510 NR_107003 102465837 NR_107003 ENSG00000278438 MIR7849 hsa-mir-7849 microRNA 7849 ncRNA 326-243 chr2 75537630 75537891 + 2 NA intron (NM_001369524, intron 2 of 5) MSTB|LTR|ERVL-MaLR 13692 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 206-240 chr6 124111575 124111720 + 2 NA intron (NM_001040214, intron 1 of 6) L1MB1|LINE|L1 -171358 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 197-123 chr21 25579100 25579237 + 2 NA Intergenic Intergenic 4056 NR_024092 282566 Hs.384586 NR_024092 ENSG00000260583 LINC00515 C21orf71|PRED21 long intergenic non-protein coding RNA 515 ncRNA 358-102 chr12 131705267 131705478 + 2 NA Intergenic L1M2a|LINE|L1 -5718 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 347-427 chr6 25735465 25735806 + 2 NA Intergenic Intergenic 3202 NR_045125 387319 Hs.741681 NR_045125 HIST1H2APS1 H2AFSP|bA317E16.5 histone cluster 1 H2A pseudogene 1 pseudo 318-359 chr3 84607713 84607944 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 261747 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 350-276 chr20 45155324 45155645 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -19418 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 299-409 chr7 13211691 13211917 + 2 NA Intergenic Intergenic 524171 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 254-270 chr4 41724961 41725118 + 2 NA Intergenic Tigger16a|DNA|TcMar-Tigger 23931 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 295-198 chr2 20709367 20709630 + 2 NA intron (NR_104233, intron 3 of 4) L1MB7|LINE|L1 42354 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 281-39 chr10 52416681 52416866 + 2 NA Intergenic L2a|LINE|L2 38499 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 464-157 chr3 26304104 26304465 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -318522 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 374-377 chr8 30248076 30248356 + 2 NA Intergenic LTR8|LTR|ERV1 91847 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 285-382 chr7 19146555 19146746 + 2 NA Intergenic Intergenic -1229 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 317-547 chrX 65050878 65051152 + 2 NA Intergenic L1M3|LINE|L1 -16274 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 494-284 chr8 63744663 63745011 + 2 NA Intergenic MIR|SINE|MIR -24593 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 130-72 chr6 50174960 50175034 + 2 NA Intergenic Intergenic -125068 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 465-170 chr3 9103091 9103425 + 2 NA intron (NM_014850, intron 3 of 21) intron (NM_014850, intron 3 of 21) -89235 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 193-65 chr15 54719006 54719166 + 2 NA Intergenic L1MC4|LINE|L1 -337661 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 219-259 chr4 59865274 59865475 + 2 NA Intergenic L2a|LINE|L2 851801 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 491-145 chr20 29274381 29274794 + 2 NA Intergenic ALR/Alpha|Satellite|centr 142374 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 229-236 chr21 27178503 27178697 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -211512 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 319-35 chr1 215171151 215171329 + 2 NA intron (NM_001017424, intron 4 of 6) intron (NM_001017424, intron 4 of 6) 88503 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 308-397 chr5 129319321 129319593 + 2 NA Intergenic L1M2b|LINE|L1 77690 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 253-413 chr8 119351703 119351899 + 2 NA Intergenic Intergenic 26630 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 200-3 chr1 49055334 49055527 + 2 NA intron (NM_001323575, intron 4 of 12) BLACKJACK|DNA|hAT-Blackjack -201981 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 438-53 chr11 40941768 40942179 + 2 NA intron (NM_001258419, intron 1 of 6) LTR16B|LTR|ERVL 517663 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 333-417 chr4 153378800 153379028 + 2 NA intron (NR_045605, intron 6 of 9) intron (NR_045605, intron 6 of 9) 34226 NM_032117 84057 Hs.294088 NM_032117 ENSG00000121211 MND1 GAJ meiotic nuclear divisions 1 protein-coding 276-364 chr5 30275835 30276006 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 395360 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 209-246 chr5 13921963 13922128 + 2 NA intron (NM_001369, intron 5 of 78) intron (NM_001369, intron 5 of 78) 22435 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 216-60 chr11 81987371 81987565 + 2 NA intron (NR_120571, intron 6 of 7) LTR45B|LTR|ERV1 -96632 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 245-310 chr6 131411488 131411714 + 2 NA Intergenic L1ME3Cz|LINE|L1 161197 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 205-209 chr4 126583043 126583212 + 2 NA Intergenic L1PA15-16|LINE|L1 -1049830 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 314-278 chr2 60242637 60242811 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 140312 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 346-423 chr6 61707906 61708189 + 2 NA intron (NR_146872, intron 7 of 9) intron (NR_146872, intron 7 of 9) 133917 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 349-455 chr6 122783378 122783617 + 2 NA TTS (NM_001319039) TTS (NM_001319039) 3781 NM_001319041 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 150-15 chr10 89266266 89266385 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -14286 NM_001288979 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 345-558 chr9 91371241 91371565 + 2 NA Intergenic L1PA17|LINE|L1 -9434 NM_001351431 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 324-98 chr11 85354897 85355117 + 2 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 272263 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 191-135 chr3 60342234 60342372 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -261394 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 246-36 chr10 31281218 31281352 + 2 NA Intergenic L1MEg|LINE|L1 -37132 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 616-20 chr10 107472721 107473289 + 2 NA Intergenic MIRb|SINE|MIR -308299 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 598-116 chr5 160318563 160318909 + 2 NA intron (NR_131769, intron 1 of 7) MER45B|DNA|hAT-Tip100 -6172 NM_024565 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 551-61 chr15 60794336 60794742 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 112970 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 243-413 chr7 30723532 30723685 + 2 NA Intergenic Intergenic -23505 NM_001202481 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 303-455 chr8 86460066 86460323 + 2 NA intron (NM_007013, intron 22 of 24) intron (NM_007013, intron 22 of 24) 48492 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 225-314 chr6 146296093 146296311 + 2 NA intron (NM_001278065, intron 3 of 9) L1PREC2|LINE|L1 -247631 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 270-38 chr10 57625960 57626145 + 2 NA Intergenic MIRb|SINE|MIR -321493 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 351-80 chr11 114150304 114150602 + 2 NA intron (NM_006006, intron 2 of 6) AluJo|SINE|Alu 87242 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 493-120 chr18 54624901 54625290 + 2 NA Intergenic MIRb|SINE|MIR 33936 NM_173629 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 343-511 chr7 79545533 79545774 + 2 NA Intergenic Intergenic 91693 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 186-3 chr1 63962877 63963045 + 2 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 149244 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 885-11 chr2 21918631 21919183 + 2 NA Intergenic Intergenic -208255 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 338-6 chr1 57723642 57723836 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -136842 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 149-102 chr8 125946253 125946339 + 2 NA intron (NR_038446, intron 1 of 1) MER92-int|LTR|ERV1 4901 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 370-273 chr20 47937831 47938053 + 2 NA Intergenic L2a|LINE|L2 -45284 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 422-294 chr8 34051694 34051984 + 2 NA Intergenic L1PBa|LINE|L1 -451733 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 277-118 chr14 67605038 67605232 + 2 NA Intergenic L1M5|LINE|L1 -4834 NM_001363694 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 309-145 chr14 45044868 45045123 + 2 NA intron (NM_015091, intron 13 of 18) intron (NM_015091, intron 13 of 18) -39121 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 265-392 chr8 88873423 88873663 + 2 NA Intergenic Intergenic -546060 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 170-73 chr2 103946154 103946286 + 2 NA Intergenic Intergenic 462112 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 639-69 chr2 239593903 239594293 + 2 NA Intergenic L2b|LINE|L2 -168762 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 518-16 chr1 233627034 233627459 + 2 NA intron (NM_002245, intron 1 of 2) intron (NM_002245, intron 1 of 2) 3094 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 315-395 chr5 123985714 123985928 + 2 NA Intergenic L1PA10|LINE|L1 440404 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 365-308 chr5 12506104 12506306 + 2 NA Intergenic L1PREC2|LINE|L1 -68652 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 707-81 chr5 73396771 73397285 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 51749 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 290-154 chr16 13727543 13727802 + 2 NA Intergenic Intergenic -192485 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 160-80 chr4 124828901 124829009 + 2 NA Intergenic L1MCc|LINE|L1 -116223 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 458-250 chr8 60226905 60227322 + 2 NA intron (NM_001321839, intron 3 of 7) AluSc8|SINE|Alu 54287 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 320-464 chr5 145622087 145622299 + 2 NA Intergenic L1MB8|LINE|L1 213149 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 238-317 chr6 40084958 40085122 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -150578 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 308-202 chr18 64826760 64826930 + 2 NA Intergenic Intergenic -566790 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 193-11 chr1 90919563 90919714 + 2 NA intron (NM_032186, intron 2 of 3) intron (NM_032186, intron 2 of 3) 67879 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 274-126 chr14 58798579 58798843 + 2 NA Intergenic Intergenic -29577 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 232-221 chr21 16484232 16484402 + 2 NA intron (NR_136550, intron 1 of 3) L1PB1|LINE|L1 -51255 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 189-223 chr9 15730337 15730507 + 2 NA intron (NM_001355547, intron 15 of 24) intron (NM_001355547, intron 15 of 24) 166444 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 384-65 chr11 121665549 121665900 + 2 NA Intergenic Intergenic 213410 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 504-173 chr3 98180647 98181064 + 2 NA Intergenic MER34B-int|LTR|ERV1 12155 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 139-4 chr1 200766604 200766711 + 2 NA intron (NM_001297707, intron 2 of 17) MIRb|SINE|MIR 27085 NM_001297708 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 362-282 chr3 121252576 121252853 + 2 NA intron (NM_001348343, intron 15 of 27) MLT1E1A|LTR|ERVL-MaLR 203074 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 307-350 chr4 106393829 106394071 + 2 NA Intergenic Intergenic -26515 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 353-74 chr10 109583600 109583931 + 2 NA Intergenic Intergenic 339481 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 665-84 chr6 56977969 56978596 + 2 NA intron (NM_001318539, intron 1 of 3) AluJr|SINE|Alu 23175 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 599-34 chr14 35549432 35549926 + 2 NA intron (NM_014990, intron 38 of 40) intron (NM_014990, intron 38 of 40) 15515 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 303-264 chr21 27251780 27252032 + 2 NA Intergenic Intergenic -284818 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 362-339 chr5 24062709 24063008 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 111510 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 643-101 chr6 48391562 48392108 + 2 NA Intergenic L1PB3|LINE|L1 -323146 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 288-25 chr1 165203378 165203627 + 2 NA 3' UTR (NM_001174069, exon 9 of 9) 3' UTR (NM_001174069, exon 9 of 9) 152739 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 320-538 chr8 55340632 55340816 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 114597 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 377-38 chr10 26038764 26038987 + 2 NA intron (NM_017433, intron 10 of 34) L1M3|LINE|L1 104646 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 341-472 chr6 139907874 139908127 + 2 NA Intergenic Intergenic 53150 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 240-350 chr5 39939627 39939825 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -112565 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 193-132 chr20 52269489 52269606 + 2 NA Intergenic Intergenic -77562 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 246-67 chr11 45528240 45528422 + 2 NA Intergenic L2a|LINE|L2 137291 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 326-294 chr20 37616221 37616540 + 2 NA Intergenic L2a|LINE|L2 6739 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 456-5 chr1 70718257 70718700 + 2 NA intron (NR_125938, intron 5 of 6) L2a|LINE|L2 12025 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 584-92 chr21 34701548 34701938 + 2 NA intron (NM_053277, intron 1 of 5) intron (NM_053277, intron 1 of 5) 32749 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 240-212 chr2 56517729 56517897 + 2 NA Intergenic MIRc|SINE|MIR -332043 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 575-27 chr11 30112437 30112964 + 2 NA Intergenic Intergenic -95670 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 379-130 chr18 22679495 22679810 + 2 NA Intergenic MER110-int|LTR|ERV1 107185 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 325-507 chr7 61931222 61931460 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1372715 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 417-50 chr11 98744871 98745132 + 2 NA Intergenic Intergenic -275948 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 207-6 chr1 62370372 62370550 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -51027 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 277-344 chr6 22312315 22312560 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -9602 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 276-334 chr4 59142233 59142494 + 2 NA Intergenic Intergenic 128790 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 577-55 chr13 105205194 105205609 + 2 NA Intergenic L1MC1|LINE|L1 -260466 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 564-50 chr14 45316495 45316875 + 2 NA Intergenic Intergenic -63483 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 278-63 chr12 1614124 1614271 + 2 NA Intergenic Intergenic -2859 NM_030775 81029 Hs.306051 NM_030775 ENSG00000111186 WNT5B - Wnt family member 5B protein-coding 640-64 chr2 107631927 107632405 + 2 NA Intergenic L1MC3|LINE|L1 102747 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 401-35 chr10 65184136 65184408 + 2 NA Intergenic L1MC|LINE|L1 -259754 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 260-442 chr8 114947600 114947754 + 2 NA Intergenic Intergenic 720336 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 496-217 chr5 76216496 76216874 + 2 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) 133302 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 393-159 chr2 50944703 50944946 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 87308 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 377-275 chr3 152854248 152854532 + 2 NA Intergenic L1MD2|LINE|L1 19259 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 343-59 chr10 89313961 89314196 + 2 NA Intergenic Intergenic 12032 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 276-302 chr3 97170986 97171207 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -268511 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 278-369 chr6 62434585 62434806 + 2 NA Intergenic L1P4a|LINE|L1 -148468 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 214-246 chr4 136385207 136385371 + 2 NA Intergenic L1ME3G|LINE|L1 -471609 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 210-118 chr2 21107348 21107526 + 2 NA Intergenic L1MEc|LINE|L1 -16549 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 237-335 chr6 142596084 142596266 + 2 NA intron (NR_027312, intron 1 of 2) intron (NR_027312, intron 1 of 2) 41661 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 285-49 chr10 113371307 113371505 + 2 NA Intergenic Intergenic -179425 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 256-177 chr19 9296625 9296800 + 2 NA exon (NM_198535, exon 6 of 6) exon (NM_198535, exon 6 of 6) 13126 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 253-350 chr6 40059834 40060040 + 2 NA Intergenic L1PA14|LINE|L1 -125475 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 410-190 chr3 55158599 55158854 + 2 NA Intergenic Intergenic -19446 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 117-49 chr9 106013435 106013504 + 2 NA Intergenic Intergenic 318928 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 401-200 chr3 12308370 12308667 + 2 NA intron (NM_001354667, intron 1 of 6) MER63B|DNA|hAT-Blackjack -3862 NM_001330615 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 1075-11 chr4 64686212 64687044 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -277168 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 373-201 chr2 108016970 108017267 + 2 NA Intergenic Intergenic 30594 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 296-105 chr12 43485558 43485725 + 2 NA intron (NM_025003, intron 7 of 38) L1PB3|LINE|L1 66562 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 291-114 chr14 23583393 23583603 + 2 NA Intergenic L1ME4a|LINE|L1 -4708 NM_001146028 84502 Hs.597841 NM_032452 ENSG00000092051 JPH4 JP4|JPHL1 junctophilin 4 protein-coding 588-114 chr4 108249648 108250088 + 2 NA Intergenic L1ME1|LINE|L1 77748 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 289-298 chr3 40440672 40440952 + 2 NA intron (NR_040100, intron 2 of 3) HAL1|LINE|L1 12496 NR_040100 285266 Hs.619663 NR_040100 ENSG00000223797 ENTPD3-AS1 - ENTPD3 antisense RNA 1 ncRNA 261-18 chr1 115404337 115404514 + 2 NA Intergenic Intergenic -66189 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 499-292 chrX 97755448 97755778 + 2 NA Intergenic Intergenic -191078 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 290-426 chr7 64742738 64742968 + 2 NA Intergenic Intergenic -51575 NM_001271638 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 334-64 chr10 80968324 80968623 + 2 NA Intergenic L1ME3A|LINE|L1 318676 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 256-256 chr3 59044310 59044503 + 2 NA intron (NR_147234, intron 3 of 10) intron (NR_147234, intron 3 of 10) 5619 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 216-9 chr1 80712752 80712921 + 2 NA Intergenic Intergenic 71549 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 298-68 chr11 27142233 27142485 + 2 NA intron (NR_125767, intron 3 of 4) L1ME1|LINE|L1 76409 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 569-71 chr17 72288330 72288860 + 2 NA Intergenic AluSz|SINE|Alu -54216 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 291-55 chr10 66723461 66723647 + 2 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -202482 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 316-282 chr2 115526813 115527034 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 183108 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 297-4 chr1 42222773 42222966 + 2 NA intron (NM_001198850, intron 5 of 12) intron (NM_001198850, intron 5 of 12) -58124 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 232-160 chr2 18120427 18120549 + 2 NA Intergenic Intergenic 241821 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 275-156 chr18 8403283 8403442 + 2 NA intron (NM_002845, intron 30 of 30) L1PA17|LINE|L1 -36328 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 363-291 chr3 103182729 103183062 + 2 NA Intergenic L1M4c|LINE|L1 341221 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 217-141 chr16 48313695 48313885 + 2 NA intron (NM_031490, intron 11 of 14) L1PA11|LINE|L1 52097 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 372-353 chr4 36971733 36972050 + 2 NA Intergenic Intergenic -29888 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 300-131 chr15 72949263 72949490 + 2 NA Intergenic L1M2|LINE|L1 -103087 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 428-224 chr5 10019985 10020274 + 2 NA Intergenic MIR|SINE|MIR -116305 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 340-477 chr6 61562331 61562566 + 2 NA intron (NR_146870, intron 14 of 15) MER67C|LTR|ERV1 -11682 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 288-70 chr11 83098395 83098676 + 2 NA Intergenic L1M5|LINE|L1 26469 NR_038903 100506233 Hs.503429 NR_038903 ENSG00000246067 RAB30-DT RAB30-AS1 RAB30 divergent transcript ncRNA 334-512 chr7 145688298 145688515 + 2 NA Intergenic MER61-int|LTR|ERV1 -852353 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 705-36 chr15 97076315 97076950 + 2 NA Intergenic Intergenic 293197 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 393-216 chr3 68415058 68415411 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -85403 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 490-134 chr2 18384259 18384735 + 2 NA Intergenic Intergenic 176156 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 700-28 chr14 57609709 57610297 + 2 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -116146 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 315-120 chr13 94095859 94096084 + 2 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) 92020 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 181-29 chr11 91823983 91824101 + 2 NA Intergenic Intergenic -400992 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 359-56 chr10 48902679 48902986 + 2 NA intron (NM_020945, intron 47 of 61) AluSx1|SINE|Alu 11403 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 538-122 chr2 125940128 125940617 + 2 NA Intergenic L1MCc|LINE|L1 177613 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 337-327 chr22 28197918 28198103 + 2 NA intron (NM_001145418, intron 5 of 22) L1ME4a|LINE|L1 -261859 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 371-340 chr6 81532336 81532585 + 2 NA Intergenic Intergenic 220221 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 251-75 chr12 123817511 123817678 + 2 NA intron (NM_207437, intron 20 of 77) L1MEg|LINE|L1 55099 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 236-328 chr7 51527585 51527811 + 2 NA Intergenic Intergenic -134442 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 263-115 chr14 72146082 72146278 + 2 NA intron (NM_001370288, intron 2 of 16) MSTD|LTR|ERVL-MaLR 212653 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 742-57 chr4 35177756 35178298 + 2 NA Intergenic Intergenic -908280 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 723-45 chr2 205000340 205000959 + 2 NA intron (NM_205863, intron 3 of 21) Kanga2_a|DNA|TcMar-Tc2 455174 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 444-173 chr4 79071081 79071412 + 2 NA intron (NR_038342, intron 2 of 5) L1MEf|LINE|L1 99498 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 362-69 chr10 75644586 75644918 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -2757 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 293-372 chr6 80425536 80425744 + 2 NA Intergenic Intergenic 318969 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 212-188 chr20 36915209 36915379 + 2 NA intron (NM_015474, intron 9 of 15) AluJr|SINE|Alu 36414 NM_001363729 25939 Hs.580681 NM_015474 ENSG00000101347 SAMHD1 CHBL2|DCIP|HDDC1|MOP-5|SBBI88|hSAMHD1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 protein-coding 192-115 chr20 16616471 16616630 + 2 NA Intergenic Intergenic -43102 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 621-55 chr2 60232514 60232951 + 2 NA Intergenic L1MEg|LINE|L1 150304 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 357-480 chr9 74587660 74587935 + 2 NA intron (NM_006914, intron 1 of 9) MLT1H2|LTR|ERVL-MaLR -27737 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 194-8 chr1 86557098 86557274 + 2 NA intron (NM_012128, intron 1 of 13) L1PA14|LINE|L1 10108 NM_012128 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 214-46 chr10 84252447 84252630 + 2 NA intron (NM_001012720, intron 3 of 6) MIRb|SINE|MIR 7485 NM_001012722 5995 Hs.1544 NM_002921 ENSG00000148604 RGR RP44 retinal G protein coupled receptor protein-coding 279-112 chr15 61472636 61472909 + 2 NA Intergenic MIRc|SINE|MIR -243470 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 297-186 chr18 33267316 33267564 + 2 NA intron (NM_001308126, intron 12 of 23) L1MC|LINE|L1 173131 NM_001371121 329-589 chr8 125897204 125897424 + 2 NA Intergenic Intergenic 53883 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 222-41 chr10 75879974 75880164 + 2 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 97308 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 239-197 chr2 176237023 176237207 + 2 NA Intergenic Intergenic -32327 NM_001319097 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 473-274 chr8 85451725 85452134 + 2 NA intron (NR_121630, intron 2 of 2) intron (NR_121630, intron 2 of 2) 11125 NR_121632 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 465-199 chr4 58623378 58623721 + 2 NA Intergenic L1PA12|LINE|L1 -87221 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 284-110 chr14 45194398 45194612 + 2 NA intron (NM_001308133, intron 19 of 21) L1MC5|LINE|L1 58566 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 570-7 chr1 90671480 90671826 + 2 NA Intergenic Intergenic 13903 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 300-329 chr4 89892076 89892305 + 2 NA intron (NM_001371403, intron 1 of 8) L4_A_Mam|LINE|RTE-X -2664 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 512 chr1 13973187 13973641 + 2 NA Intergenic LTR33|LTR|ERVL 223999 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 364-342 chr5 51546432 51546661 + 2 NA Intergenic Intergenic 163098 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 476-214 chr5 35812811 35813178 + 2 NA intron (NM_024867, intron 36 of 36) LTR106_Mam|LTR|LTR -43897 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 313-166 chr15 60679843 60680100 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) -1598 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 494-50 chr12 40783533 40783936 + 2 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) -44204 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 295-471 chr8 95725079 95725328 + 2 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 223145 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 313-4 chr1 40683711 40684010 + 2 NA Intergenic Intergenic -7844 NM_001142589 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 312-10 chr1 59715563 59715798 + 2 NA intron (NM_001350790, intron 15 of 16) MIRb|SINE|MIR 17616 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 417-204 chr4 98199067 98199427 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -55771 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 423-251 chr6 143682867 143683188 + 2 NA intron (NM_001100165, intron 1 of 11) L1MB8|LINE|L1 5062 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 393-185 chr2 208546626 208546951 + 2 NA intron (NR_136588, intron 1 of 5) intron (NR_136588, intron 1 of 5) 4146 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 399-332 chr9 88409182 88409437 + 2 NA intron (NM_006717, intron 1 of 5) L1MEg|LINE|L1 20865 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 388-73 chr11 129541914 129542171 + 2 NA Intergenic Intergenic 75227 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 518-302 chr8 126668648 126669080 + 2 NA Intergenic Intergenic -110386 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 483-176 chr3 121399751 121400137 + 2 NA intron (NM_001348343, intron 23 of 27) MER5A|DNA|hAT-Charlie 146044 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 246-346 chr6 36356956 36357197 + 2 NA intron (NM_001207035, intron 7 of 7) intron (NM_001207035, intron 7 of 7) -20188 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 135-43 chr22 27035253 27035329 + 2 NA Intergenic Intergenic 25227 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 252-146 chr16 62603382 62603552 + 2 NA Intergenic L2|LINE|L2 -567029 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 359-426 chr6 65951110 65951462 + 2 NA Intergenic Intergenic 163407 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 265-391 chr8 88620725 88620984 + 2 NA Intergenic Intergenic -293371 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 329-28 chr1 195847674 195847856 + 2 NA Intergenic Intergenic 240950 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 201-146 chr3 5386559 5386727 + 2 NA Intergenic Intergenic -136388 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 540-47 chr12 4497498 4497942 + 2 NA intron (NR_144382, intron 7 of 9) intron (NR_144382, intron 7 of 9) 40749 NM_020374 57102 Hs.302977 NM_020374 ENSG00000047621 C12orf4 - chromosome 12 open reading frame 4 protein-coding 378-304 chr4 44923207 44923516 + 2 NA Intergenic Intergenic -196727 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 347-366 chr4 179897574 179897790 + 2 NA Intergenic Intergenic 1261467 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 692-111 chr9 104214795 104215303 + 2 NA Intergenic L1MA8|LINE|L1 -55180 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 242-310 chr5 86911372 86911595 + 2 NA Intergenic Intergenic 164665 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 314-275 chr2 46215230 46215403 + 2 NA Intergenic L1M1|LINE|L1 -82091 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 187-178 chr8 121880034 121880170 + 2 NA Intergenic L3|LINE|CR1 -238662 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 181-126 chr5 83283400 83283551 + 2 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -188199 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 357-355 chr5 110403032 110403219 + 2 NA Intergenic Intergenic 110790 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 301-387 chr5 179081699 179081859 + 2 NA 3' UTR (NM_014594, exon 5 of 5) 3' UTR (NM_014594, exon 5 of 5) 21406 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 310-515 chr8 71353541 71353805 + 2 NA intron (NM_001370336, intron 4 of 17) intron (NM_001370336, intron 4 of 17) 3033 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 329-245 chr19 31599287 31599584 + 2 NA Intergenic AluSz|SINE|Alu 7154 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 171-130 chr7 131009093 131009238 + 2 NA intron (NR_109850, intron 3 of 5) intron (NR_109850, intron 3 of 5) 95701 NR_109780 100506860 Hs.635013 NR_109780 LINC00513 - long intergenic non-protein coding RNA 513 ncRNA 130-16 chr11 135054308 135054393 + 2 NA Intergenic L1M4c|LINE|L1 68998 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 307-263 chr2 212520847 212521108 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 17651 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 206-207 chr5 63017102 63017260 + 2 NA Intergenic Intergenic 438362 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 323-8 chr1 56454524 56454750 + 2 NA Intergenic L1ME4a|LINE|L1 39674 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 243-364 chr5 93546245 93546429 + 2 NA intron (NR_109819, intron 4 of 5) intron (NR_109819, intron 4 of 5) 25006 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 318-583 chr9 122745006 122745237 + 2 NA Intergenic Intergenic -4727 NM_001004453 392390 Hs.553790 NM_001004453 ENSG00000171459 OR1L6 HG16|OR1K1|OR1L7|OR9-30 olfactory receptor family 1 subfamily L member 6 protein-coding 268-2 chr1 15130520 15130703 + 2 NA intron (NR_027136, intron 1 of 4) intron (NR_027136, intron 1 of 4) 21853 NR_027136 200197 Hs.531424 NM_182534 ENSG00000175147 TMEM51-AS1 C1orf126 TMEM51 antisense RNA 1 ncRNA 226-329 chr7 109433719 109433907 + 2 NA Intergenic L1PREC2|LINE|L1 526400 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 320-513 chr7 45193680 45193968 + 2 NA Intergenic L1ME3G|LINE|L1 36033 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 309-23 chr1 192171687 192171916 + 2 NA intron (NM_130782, intron 3 of 4) intron (NM_130782, intron 3 of 4) 13339 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 629-13 chr1 228715116 228715677 + 2 NA intron (NR_037962, intron 1 of 2) L1M5|LINE|L1 -20083 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 249-347 chr5 152296890 152297044 + 2 NA Intergenic L2c|LINE|L2 108312 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 314-546 chr7 114879183 114879362 + 2 NA Intergenic L1MA2|LINE|L1 -42882 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 345-136 chr13 58015168 58015355 + 2 NA Intergenic Intergenic -150566 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 493-265 chr6 165828632 165828958 + 2 NA Intergenic Intergenic -158756 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 182-179 chr9 85408530 85408698 + 2 NA Intergenic Intergenic 333415 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 338-103 chr11 73783586 73783827 + 2 NA Intergenic Intergenic -4168 NR_134661 51642 Hs.503239 NM_016055 ENSG00000175581 MRPL48 CGI-118|HSPC290|L48MT|MRP-L48 mitochondrial ribosomal protein L48 protein-coding 463-126 chr19 37221350 37221790 + 2 NA intron (NM_001345948, intron 2 of 5) AluJb|SINE|Alu 3290 NM_001345949 163087 Hs.590975 NM_152604 ENSG00000188283 ZNF383 HSD17 zinc finger protein 383 protein-coding 330-418 chr5 42842166 42842379 + 2 NA Intergenic Intergenic -30196 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 231-380 chr9 77224124 77224329 + 2 NA intron (NM_001018038, intron 13 of 68) Tigger1|DNA|TcMar-Tigger -46309 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 340-338 chr21 34006789 34006971 + 2 NA Intergenic Intergenic 30498 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 439-311 chrX 34215125 34215418 + 2 NA Intergenic L1PA15|LINE|L1 -82941 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 308-457 chr7 31358899 31359184 + 2 NA Intergenic Intergenic -18315 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 383-6 chr1 60599069 60599393 + 2 NA intron (NR_146508, intron 2 of 7) intron (NR_146508, intron 2 of 7) 23454 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 405-159 chr2 153748813 153749040 + 2 NA Intergenic L1M1|LINE|L1 -122996 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 471-163 chr3 5183053 5183379 + 2 NA Intergenic Intergenic -4491 NM_014674 9695 Hs.224616 NM_014674 ENSG00000134109 EDEM1 EDEM ER degradation enhancing alpha-mannosidase like protein 1 protein-coding 195-231 chr7 107068524 107068643 + 2 NA intron (NM_002736, intron 1 of 10) intron (NM_002736, intron 1 of 10) 23878 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 315-443 chr7 53258790 53259092 + 2 NA Intergenic Intergenic 223308 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 307-231 chr2 53274238 53274519 + 2 NA Intergenic Intergenic -493405 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 566-209 chr9 83179431 83179826 + 2 NA Intergenic L2a|LINE|L2 87640 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 292-35 chr1 247099107 247099338 + 2 NA TTS (NM_024804) TTS (NM_024804) 5150 NM_024804 79862 Hs.163754 NM_024804 ENSG00000188295 ZNF669 - zinc finger protein 669 protein-coding 323-94 chr11 97957721 97957899 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -1063139 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 157-134 chr8 128434732 128434816 + 2 NA intron (NR_121672, intron 2 of 7) MIRb|SINE|MIR 129905 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 343-325 chr3 6137340 6137549 + 2 NA Intergenic Intergenic 668005 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 604-32 chr11 104086233 104086597 + 2 NA intron (NM_025208, intron 1 of 6) Kanga11a|DNA|TcMar-Tc2 49775 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 340-71 chr11 29189546 29189745 + 2 NA Intergenic Intergenic -404768 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 289-437 chr7 41482862 41483088 + 2 NA Intergenic L1MC|LINE|L1 -210944 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 310-8 chr1 88575811 88576119 + 2 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -108179 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 322-340 chr3 107452381 107452597 + 2 NA intron (NR_110039, intron 1 of 2) intron (NR_110039, intron 1 of 2) 21559 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 238-117 chr15 72699445 72699671 + 2 NA intron (NM_033028, intron 2 of 15) L1ME2|LINE|L1 13351 NM_033028 585 Hs.208681 NM_033028 ENSG00000140463 BBS4 - Bardet-Biedl syndrome 4 protein-coding 390-281 chr5 5865537 5865888 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 443035 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 515-221 chr5 155259451 155259954 + 2 NA Intergenic LTR32|LTR|ERVL 245947 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 240-288 chr3 96086175 96086363 + 2 NA Intergenic MER57C2|LTR|ERV1 -273695 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 327-180 chr16 12000488 12000662 + 2 NA intron (NM_032167, intron 2 of 20) AluJr|SINE|Alu 23841 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 333-482 chr5 156863835 156864019 + 2 NA Intergenic Intergenic 13632 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 232-110 chr15 25925255 25925438 + 2 NA intron (NR_040082, intron 1 of 4) MER21B|LTR|ERVL 22986 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 422-175 chr3 12180736 12181052 + 2 NA intron (NM_133625, intron 10 of 12) intron (NM_133625, intron 10 of 12) -21982 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 496-120 chr18 61149678 61150126 + 2 NA Intergenic Intergenic -183528 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 561-88 chr19 36238112 36238525 + 2 NA 3' UTR (NM_007145, exon 4 of 4) 3' UTR (NM_007145, exon 4 of 4) 7610 NM_001366188 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 341-94 chr11 99193327 99193632 + 2 NA intron (NM_001243270, intron 1 of 23) L1MEd|LINE|L1 172530 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 385-155 chr19 31790342 31790724 + 2 NA Intergenic L1ME2z|LINE|L1 198252 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 685-47 chr2 82832512 82832974 + 2 NA Intergenic Intergenic -24060 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 276-225 chr2 62226352 62226547 + 2 NA Intergenic Intergenic 10928 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 118-56 chr7 109867046 109867140 + 2 NA Intergenic Intergenic 93120 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 419-135 chr2 35272379 35272651 + 2 NA Intergenic L1MA6|LINE|L1 -198890 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 322-6 chr1 49027302 49027539 + 2 NA intron (NM_001323575, intron 5 of 12) AluSq2|SINE|Alu -229991 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 241-289 chr5 15625127 15625287 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -10205 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 370-149 chr14 71963121 71963325 + 2 NA intron (NM_001370288, intron 1 of 16) MIRc|SINE|MIR 29696 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 279-409 chr8 21425674 21425857 + 2 NA Intergenic Intergenic 127526 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 354-370 chr5 43935900 43936170 + 2 NA Intergenic L1MA1|LINE|L1 -332805 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 617-92 chr3 187869294 187869735 + 2 NA Intergenic L1ME3F|LINE|L1 106893 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 274-160 chr17 34722225 34722423 + 2 NA Intergenic MIRb|SINE|MIR 141575 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 243-190 chr19 51857455 51857625 + 2 NA intron (NM_001370456, intron 5 of 5) intron (NM_001370456, intron 5 of 5) 30396 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 225-369 chr8 121405481 121405651 + 2 NA Intergenic CR1_Mam|LINE|CR1 -233780 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 419-239 chr5 147715523 147715912 + 2 NA intron (NM_001270934, intron 1 of 20) L1MEg|LINE|L1 67011 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 322-263 chr2 117729000 117729277 + 2 NA Intergenic Intergenic -85553 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 262-218 chr2 120665920 120666172 + 2 NA Intergenic L1MEd|LINE|L1 -69822 NM_001371271 679-109 chr8 113999509 114000114 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -562872 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 422-221 chr4 123579266 123579570 + 2 NA Intergenic Intergenic -70573 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 363-418 chr7 54060458 54060812 + 2 NA Intergenic Intergenic -248704 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 235-179 chr2 117703207 117703391 + 2 NA Intergenic L1ME1|LINE|L1 -111392 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 280-303 chr4 163730866 163731125 + 2 NA intron (NM_001166373, intron 3 of 7) L2a|LINE|L2 -117461 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 344-454 chr7 40830039 40830260 + 2 NA intron (NM_024728, intron 14 of 14) L2a|LINE|L2 149790 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 382-218 chr2 126848551 126848839 + 2 NA Intergenic L1ME2z|LINE|L1 -50195 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 563-182 chr8 84873226 84873754 + 2 NA intron (NM_001354323, intron 7 of 7) intron (NM_001354323, intron 7 of 7) 167563 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 351-236 chr2 128707137 128707371 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -157346 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 563-41 chr12 90912721 90913210 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -5058 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 326-44 chr1 212900402 212900615 + 2 NA Intergenic L1M3c|LINE|L1 42233 NM_014053 28982 Hs.7055 NM_014053 ENSG00000162769 FLVCR1 AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1 feline leukemia virus subgroup C cellular receptor 1 protein-coding 769-38 chr3 2280912 2281663 + 2 NA intron (NM_001206955, intron 1 of 23) MIR|SINE|MIR 42458 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 354-477 chr8 126432417 126432612 + 2 NA Intergenic L2a|LINE|L2 107019 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 476-230 chr5 125911399 125911803 + 2 NA Intergenic L1MA3|LINE|L1 -267976 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 314-184 chr15 47113676 47113906 + 2 NA Intergenic Intergenic -70298 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 156-112 chr9 74532882 74533006 + 2 NA intron (NM_006914, intron 1 of 9) MER102a|DNA|hAT-Charlie -34391 NR_125791 103752585 Hs.635501 NR_125791 RORB-AS1 - RORB antisense RNA 1 ncRNA 341-221 chr19 44039018 44039265 + 2 NA Intergenic L1M4|LINE|L1 -12895 NM_013361 7766 Hs.720813 NM_013361 ENSG00000178386 ZNF223 - zinc finger protein 223 protein-coding 178-113 chr5 144752616 144752788 + 2 NA Intergenic Intergenic 547311 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 448-227 chr5 157240082 157240426 + 2 NA intron (NM_005546, intron 10 of 16) MER1B|DNA|hAT-Charlie -25869 NM_001291721 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 362-98 chr11 98862752 98862967 + 2 NA Intergenic Intergenic -158090 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 407-132 chr2 6539360 6539721 + 2 NA Intergenic Zaphod3|DNA|hAT-Tip100 94247 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 217-225 chr3 71213058 71213213 + 2 NA intron (NR_146142, intron 5 of 19) intron (NR_146142, intron 5 of 19) 31942 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 241-251 chr3 157240595 157240749 + 2 NA Intergenic Intergenic -79912 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 262-460 chr9 108260718 108260978 + 2 NA Intergenic Intergenic 595138 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 246-285 chr4 28648603 28648813 + 2 NA Intergenic Intergenic -170874 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 503-36 chr10 73353164 73353612 + 2 NA intron (NM_001367801, intron 3 of 27) L1ME4b|LINE|L1 5366 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 722-31 chr14 70438813 70439475 + 2 NA Intergenic HERV3-int|LTR|ERV1 -13030 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 578-130 chr4 63638799 63639284 + 2 NA Intergenic Intergenic 770409 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 241-333 chr6 64072497 64072699 + 2 NA intron (NM_001292009, intron 32 of 43) HAL1b|LINE|L1 265762 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 218-65 chr12 39905983 39906140 + 2 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 200020 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 311-433 chr6 47452384 47452623 + 2 NA Intergenic Intergenic -25286 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 509-151 chr3 77240747 77241194 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 142958 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 225-16 chr1 197545628 197545783 + 2 NA intron (NR_125340, intron 15 of 19) intron (NR_125340, intron 15 of 19) 229775 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 557-37 chr11 115087803 115088328 + 2 NA Intergenic MIR|SINE|MIR -245512 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 287-233 chr21 26980125 26980336 + 2 NA Intergenic L1MEi|LINE|L1 -13142 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 362-208 chr2 40001083 40001302 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 83558 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 403-30 chr10 60856014 60856315 + 2 NA Intergenic Intergenic 77686 NM_001786 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 570-8 chr1 94692370 94692783 + 2 NA intron (NR_160779, intron 2 of 5) MIR|SINE|MIR 53324 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 316-51 chr10 5119204 5119397 + 2 NA Intergenic Intergenic 24886 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 120-40 chr5 38166347 38166426 + 2 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 17906 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 184-39 chr11 79307027 79307159 + 2 NA intron (NM_001098816, intron 1 of 33) MIRb|SINE|MIR 95016 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 224-333 chr8 119086600 119086799 + 2 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -17917 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 326-161 chr15 27736611 27736802 + 2 NA Intergenic Intergenic 362609 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 500-176 chr3 2841430 2841720 + 2 NA intron (NM_175607, intron 7 of 24) intron (NM_175607, intron 7 of 24) -50640 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 381-35 chr10 8605334 8605579 + 2 NA Intergenic L1ME1|LINE|L1 -11065 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 123-26 chr2 41346184 41346263 + 2 NA Intergenic Intergenic -531332 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 330-83 chr11 14335582 14335870 + 2 NA intron (NM_001177314, intron 1 of 5) L1MDa|LINE|L1 22759 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 595-95 chr2 180622413 180622848 + 2 NA Intergenic L1MEg1|LINE|L1 -69474 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 160-47 chr2 184954356 184954464 + 2 NA Intergenic Intergenic 212662 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 375-79 chr11 81884605 81884820 + 2 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) 6124 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 389-341 chr7 45459070 45459404 + 2 NA Intergenic L1ME3G|LINE|L1 -114903 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 331-346 chr3 59053016 59053247 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -3099 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 130-71 chr6 36144190 36144290 + 2 NA non-coding (NR_072996, exon 10 of 10) non-coding (NR_072996, exon 10 of 10) 13727 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 131-61 chr5 5124084 5124191 + 2 NA Intergenic Intergenic 15917 NR_109915 101929176 Hs.208717 NR_109915 CTD-2297D10.2 - uncharacterized LOC101929176 ncRNA 334-70 chr10 104806216 104806464 + 2 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -140124 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 273-136 chr14 66925793 66925981 + 2 NA intron (NM_020806, intron 8 of 22) L1MA3|LINE|L1 -263553 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 301-196 chr2 34865538 34865770 + 2 NA Intergenic L2a|LINE|L2 188097 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 393-54 chr11 78762392 78762650 + 2 NA intron (NM_001098816, intron 18 of 33) intron (NM_001098816, intron 18 of 33) -187657 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 344-494 chr8 109032673 109032894 + 2 NA Intergenic Intergenic -53845 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 308-260 chr2 234613252 234613470 + 2 NA Intergenic L1ME3C|LINE|L1 -69307 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 346-228 chr2 14868736 14868983 + 2 NA Intergenic Intergenic 236142 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 350-258 chr2 210031560 210031826 + 2 NA intron (NM_152519, intron 8 of 14) intron (NM_152519, intron 8 of 14) 1771 NR_110291 101928020 Hs.635556 NR_110291 LOC101928020 - uncharacterized LOC101928020 ncRNA 392-321 chr8 82295413 82295724 + 2 NA Intergenic Intergenic -453282 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 335-368 chr3 180502212 180502415 + 2 NA Intergenic MER113A|DNA|hAT-Charlie 88140 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 245-236 chr3 107498847 107499015 + 2 NA Intergenic Intergenic -24031 NM_001276286 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 315-280 chr20 47033547 47033754 + 2 NA intron (NM_172110, intron 5 of 13) MLT1I|LTR|ERVL-MaLR -133317 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 138-66 chr5 39794501 39794606 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -257738 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 336-121 chr12 21569545 21569833 + 2 NA intron (NM_021957, intron 4 of 15) intron (NM_021957, intron 4 of 15) 35158 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 327-192 chr16 86104446 86104620 + 2 NA Intergenic Intergenic -91648 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 408-124 chr16 6789178 6789455 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 15507 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 626-87 chr22 47265295 47265722 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -80063 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 297-408 chr6 93206363 93206531 + 2 NA Intergenic L1M2|LINE|L1 213112 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 376-240 chr3 43047447 43047800 + 2 NA intron (NM_001129908, intron 2 of 4) intron (NM_001129908, intron 2 of 4) 58456 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 541-192 chr5 141431157 141431594 + 2 NA exon (NM_003735, exon 1 of 4) exon (NM_003735, exon 1 of 4) 868 NM_032094 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 475-44 chr11 92002465 92002862 + 2 NA Intergenic Intergenic -222371 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 372-346 chr3 197247655 197247927 + 2 NA intron (NM_001366216, intron 4 of 23) HERVIP10F-int|LTR|ERV1 46157 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 416-111 chr13 106785219 106785493 + 2 NA Intergenic Intergenic 131476 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 343-84 chr11 116612925 116613238 + 2 NA Intergenic Intergenic -26341 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 355-459 chr7 40889246 40889588 + 2 NA Intergenic Intergenic 90522 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 629-100 chr5 36015186 36015631 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -14386 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 356-496 chr8 139912870 139913213 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 187494 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 494-234 chr5 115698944 115699433 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -26536 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 634-65 chr18 64088719 64089283 + 2 NA intron (NR_027245, intron 3 of 3) LTR33A|LTR|ERVL -15090 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 174-131 chr6 115371383 115371527 + 2 NA Intergenic MIR|SINE|MIR 272380 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 234-57 chr11 32462746 32462938 + 2 NA Intergenic Intergenic 26803 NR_120546 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 324-143 chr13 85888192 85888510 + 2 NA Intergenic Tigger17b|DNA|TcMar-Tigger -88932 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 373-81 chr11 81729346 81729534 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 161396 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 372-168 chr16 7577762 7578117 + 2 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 245094 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 178-58 chr18 70533527 70533672 + 2 NA Intergenic L1M6|LINE|L1 117355 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 406-185 chr3 40439163 40439560 + 2 NA intron (NR_040100, intron 2 of 3) AluJo|SINE|Alu 13947 NR_040100 285266 Hs.619663 NR_040100 ENSG00000223797 ENTPD3-AS1 - ENTPD3 antisense RNA 1 ncRNA 442-307 chr8 143920349 143920683 + 2 NA exon (NM_201380, exon 32 of 32) exon (NM_201380, exon 32 of 32) 19081 NM_201384 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 437-85 chr15 61479498 61479830 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -250254 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 369-308 chr4 185633067 185633319 + 2 NA intron (NM_001145670, intron 11 of 20) intron (NM_001145670, intron 11 of 20) 23553 NM_001145675 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 292-457 chr9 28284476 28284737 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 434699 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 408-24 chr1 172887296 172887525 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 163553 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 371-252 chr3 117634138 117634394 + 2 NA Intergenic AluJo|SINE|Alu 56659 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 407-47 chr11 39034699 39034964 + 2 NA Intergenic Intergenic 385973 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 287-144 chr14_GL000225v1_random 123354 123611 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 321-270 chr19 53221490 53221723 + 2 NA Intergenic AluSx3|SINE|Alu 8658 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 808-46 chr5 145436837 145437515 + 2 NA Intergenic Intergenic 398166 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 397-19 chr1 189015039 189015323 + 2 NA Intergenic Intergenic 1460829 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 316-430 chr5 25923776 25923992 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 732931 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 251-178 chr2 108268437 108268598 + 2 NA Intergenic Intergenic -20378 NM_001056 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 345-46 chr10 11233601 11233804 + 2 NA intron (NM_001025076, intron 3 of 13) intron (NM_001025076, intron 3 of 13) 68672 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 522-20 chr10 43971286 43971635 + 2 NA intron (NR_136147, intron 4 of 4) MLT1B|LTR|ERVL-MaLR 59058 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 316-137 chr12 67907349 67907585 + 2 NA Intergenic L1M5|LINE|L1 -21768 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 291-133 chr14 71749744 71749959 + 2 NA Intergenic Intergenic 163553 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 188-193 chr7 102927424 102927571 + 2 NA intron (NR_105043, intron 10 of 20) intron (NR_105043, intron 10 of 20) 14497 NM_005824 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 247-153 chr17 28708325 28708506 + 2 NA intron (NM_001304949, intron 1 of 4) L2|LINE|L2 1689 NM_001366303 147011 Hs.207471 NM_152465 ENSG00000167525 PROCA1 - protein interacting with cyclin A1 protein-coding 215-16 chr1 190614984 190615121 + 2 NA Intergenic MIRb|SINE|MIR -9838 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 549-24 chr10 38578132 38578553 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -118254 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 363-249 chr20 10688756 10688972 + 2 NA Intergenic Intergenic -14865 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 335-379 chr4 37736504 37736830 + 2 NA Intergenic Intergenic -50291 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 210-140 chr2 142628924 142629087 + 2 NA Intergenic Intergenic -248659 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 302-134 chr14 83236754 83237005 + 2 NA Intergenic LTR50|LTR|ERVL 594247 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 378-175 chr17 69992620 69992996 + 2 NA Intergenic Intergenic 31101 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 266-307 chr4 158275795 158275992 + 2 NA Intergenic MamRep605|LTR?|LTR? 65407 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 377-206 chr2 97867983 97868317 + 2 NA intron (NM_015348, intron 4 of 40) L1MEc|LINE|L1 127798 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 419-15 chr1 108328124 108328500 + 2 NA Intergenic L2|LINE|L2 -84231 NM_001143989 148545 Hs.511849 NM_152488 ENSG00000196427 NBPF4 - NBPF member 4 protein-coding 192-158 chr5 27366635 27366807 + 2 NA Intergenic Intergenic -105571 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 270-67 chr11 114301603 114301776 + 2 NA intron (NM_006169, intron 2 of 2) L1MC1|LINE|L1 5876 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 288-149 chr16 66319734 66320005 + 2 NA Intergenic MIR|SINE|MIR -46822 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 132-23 chr14 52574926 52575013 + 2 NA intron (NM_001353361, intron 1 of 7) intron (NM_001353361, intron 1 of 7) 22133 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 282-117 chr13 73771427 73771653 + 2 NA intron (NM_007249, intron 5 of 7) intron (NM_007249, intron 5 of 7) 207296 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 316-344 chr3 40680161 40680445 + 2 NA Intergenic Intergenic 155343 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 433-75 chr14 44866326 44866648 + 2 NA Intergenic L1MA5A|LINE|L1 -30788 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 242-14 chr1 118444627 118444813 + 2 NA Intergenic L1MEg|LINE|L1 -259492 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 406-237 chr5 114826738 114827019 + 2 NA Intergenic Intergenic -53465 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 318-597 chrX 153836702 153836982 + 2 NA Intergenic L1MB4|LINE|L1 -5955 NM_032512 57595 Hs.92732 NM_032512 ENSG00000067840 PDZD4 LNX5|LU1|PDZK4|PDZRN4L PDZ domain containing 4 protein-coding 357-149 chr16 79320068 79320313 + 2 NA Intergenic Intergenic 280547 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 297-36 chr1 238518917 238519096 + 2 NA Intergenic Intergenic -32989 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 346-466 chr7 54672797 54673021 + 2 NA Intergenic MER34|LTR|ERV1 86302 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 264-135 chr14 70446268 70446497 + 2 NA Intergenic LTR25-int|LTR|ERV1 -5792 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 242-413 chr8 127840987 127841204 + 2 NA intron (NR_003367, intron 1 of 8) MIRb|SINE|MIR 45133 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 242-154 chr19 30771805 30771947 + 2 NA Intergenic L1M3|LINE|L1 -395634 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 331-326 chr21 31842225 31842501 + 2 NA Intergenic Intergenic -30657 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 357-108 chr14 37747037 37747382 + 2 NA intron (NM_001310135, intron 12 of 32) ERVL-B4-int|LTR|ERVL -25174 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 402-184 chr20 14163229 14163614 + 2 NA intron (NM_001351663, intron 3 of 17) L1MA4A|LINE|L1 167905 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 456-173 chr2 210593000 210593354 + 2 NA promoter-TSS (NR_163592) promoter-TSS (NR_163592) -178 NR_163592 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 434-178 chr3 25288258 25288569 + 2 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -52389 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 181-11 chr1 222999231 222999364 + 2 NA intron (NM_001369594, intron 7 of 7) intron (NM_001369594, intron 7 of 7) 70873 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 293-480 chr9 115969556 115969761 + 2 NA Intergenic Intergenic -44451 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 390-207 chr20 6501836 6502199 + 2 NA intron (NR_109953, intron 3 of 3) intron (NR_109953, intron 3 of 3) 75285 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 214-328 chr8 98972102 98972251 + 2 NA Intergenic Intergenic 27734 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 377-336 chr5 146447041 146447304 + 2 NA promoter-TSS (NM_001040006) promoter-TSS (NM_001040006) -161 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 250-305 chr4 43750236 43750422 + 2 NA Intergenic Intergenic -257786 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 308-268 chr20 33267982 33268221 + 2 NA Intergenic LTR16A1|LTR|ERVL -15113 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 235-15 chr1 113867363 113867587 + 2 NA intron (NM_012411, intron 1 of 18) MIRb|SINE|MIR 4237 NM_015967 26191 Hs.535276 NM_012411 ENSG00000134242 PTPN22 LYP|LYP1|LYP2|PEP|PTPN22.5|PTPN22.6|PTPN8 protein tyrosine phosphatase non-receptor type 22 protein-coding 360-24 chr1 240018255 240018533 + 2 NA Intergenic L1MB8|LINE|L1 10870 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 316-160 chr14 30838335 30838595 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -36070 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 382-390 chr7 113147752 113148043 + 2 NA Intergenic Intergenic -29315 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 911-29 chr8 68448530 68449109 + 2 NA intron (NR_146187, intron 3 of 13) L1M4a1|LINE|L1 -117328 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 350-63 chr10 116579635 116579841 + 2 NA Intergenic Intergenic -11221 NM_006229 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 583-3 chr1 62613647 62614066 + 2 NA intron (NM_001367561, intron 14 of 49) intron (NM_001367561, intron 14 of 49) 16336 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 326-99 chr11 45070018 45070249 + 2 NA Intergenic Intergenic -23880 NM_001359633 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 389-100 chr14 55475135 55475393 + 2 NA Intergenic Intergenic -34719 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 315-428 chr6 148799009 148799194 + 2 NA intron (NM_005715, intron 1 of 7) AluSx|SINE|Alu 52071 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 296-360 chr5 30970962 30971187 + 2 NA Intergenic Intergenic -222612 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 319-362 chr4 37225952 37226221 + 2 NA Intergenic Intergenic 15905 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 333-191 chr17 69454162 69454392 + 2 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 31255 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 297-70 chr11 30885381 30885549 + 2 NA intron (NM_001367979, intron 36 of 38) L1ME4a|LINE|L1 107221 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 382-272 chr3 102700378 102700592 + 2 NA Intergenic Intergenic 265470 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 241-49 chr10 99147533 99147729 + 2 NA intron (NM_021828, intron 2 of 11) L3|LINE|CR1 88244 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 385-392 chr8 135207767 135207997 + 2 NA Intergenic Intergenic -26249 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 208-185 chr4 63047637 63047791 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -885949 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 316-177 chr14 87369027 87369336 + 2 NA Intergenic Intergenic 286113 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 504-222 chr6 15727467 15727787 + 2 NA Intergenic Intergenic -64569 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 267-344 chr5 120014044 120014199 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 384562 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 266-380 chr6 147368301 147368489 + 2 NA intron (NM_139244, intron 23 of 25) L1ME1|LINE|L1 -140295 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 478-31 chr10 91315677 91316034 + 2 NA intron (NR_024467, intron 4 of 4) intron (NR_024467, intron 4 of 4) -93380 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 478-191 chr3 82873093 82873432 + 2 NA Intergenic Intergenic 887120 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 709-98 chr9 29469568 29470080 + 2 NA Intergenic L1PA10|LINE|L1 -256223 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 373-420 chr8 118499573 118499792 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -121319 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 251-154 chr2 7821186 7821351 + 2 NA Intergenic L1M5|LINE|L1 78387 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 222-359 chr8 32596063 32596234 + 2 NA intron (NM_001160001, intron 1 of 9) intron (NM_001160001, intron 1 of 9) 322 NM_001322202 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 190-159 chr6 166304823 166304923 + 2 NA TTS (NM_175922) TTS (NM_175922) 3519 NM_175922 285800 Hs.731862 NM_175922 ENSG00000176381 PRR18 - proline rich 18 protein-coding 443-51 chr11 47120970 47121376 + 2 NA intron (NM_001003677, intron 3 of 8) intron (NM_001003677, intron 3 of 8) 55706 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 224-219 chr4 44053471 44053665 + 2 NA Intergenic Intergenic 36506 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 331-430 chr5 112302780 112303088 + 2 NA intron (NM_001347887, intron 2 of 23) intron (NM_001347887, intron 2 of 23) 74651 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 430-73 chr13 58628233 58628609 + 2 NA Intergenic L1M2|LINE|L1 -395304 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 358-387 chr5 148070677 148070931 + 2 NA intron (NM_006846, intron 3 of 32) intron (NM_006846, intron 3 of 32) 6824 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 457-130 chr2 198178565 198178922 + 2 NA Intergenic L1MA9|LINE|L1 196354 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 231-116 chr16 26848091 26848254 + 2 NA Intergenic L1ME4b|LINE|L1 -218755 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 153-6 chr1 83900080 83900189 + 2 NA intron (NM_001350215, intron 17 of 19) intron (NM_001350215, intron 17 of 19) -39138 NR_119375 101927587 Hs.621230 NR_119375 ENSG00000233008 LINC01725 - long intergenic non-protein coding RNA 1725 ncRNA 322-293 chr20 42765474 42765735 + 2 NA intron (NM_133170, intron 5 of 31) L1ME4a|LINE|L1 80121 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 313-154 chr14 72359570 72359790 + 2 NA intron (NM_001370288, intron 3 of 16) L2a|LINE|L2 -157140 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 294-481 chr8 131091673 131091899 + 2 NA Intergenic AluJb|SINE|Alu -50877 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 244-285 chr5 13812582 13812779 + 2 NA intron (NM_001369, intron 43 of 78) intron (NM_001369, intron 43 of 78) 131800 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 267-349 chr5 137009653 137009833 + 2 NA intron (NM_004598, intron 6 of 10) intron (NM_004598, intron 6 of 10) -118454 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 319-224 chr2 2505596 2505857 + 2 NA Intergenic Intergenic -174451 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 160-52 chr20 47604765 47604865 + 2 NA intron (NM_181659, intron 2 of 22) L1MEi|LINE|L1 102928 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 187-118 chr3 141801716 141801867 + 2 NA intron (NM_139209, intron 2 of 3) L1MC5|LINE|L1 23590 NM_139209 131890 Hs.680654 NM_139209 ENSG00000114124 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 277-91 chr12 42140745 42141009 + 2 NA intron (NM_173601, intron 1 of 7) intron (NM_173601, intron 1 of 7) 3997 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 233-284 chr5 12380645 12380826 + 2 NA Intergenic L1PA14|LINE|L1 -194122 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 289-281 chr21 34169711 34169908 + 2 NA Intergenic AluSz|SINE|Alu -10868 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 299-21 chr1 112753967 112754196 + 2 NA Intergenic AluJo|SINE|Alu 33514 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 290-390 chr6 79275069 79275253 + 2 NA Intergenic MIR|SINE|MIR 38223 NR_130915 80078 NR_130915 ENSG00000286042 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 451-34 chr11 39829211 39829538 + 2 NA Intergenic Intergenic 463756 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 309-502 chr7 3873882 3874042 + 2 NA intron (NM_152744, intron 5 of 44) L1MCa|LINE|L1 -255723 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 214-146 chr19 30275638 30275792 + 2 NA Intergenic MIR|SINE|MIR -96669 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 222-39 chr10 62172545 62172695 + 2 NA Intergenic L1MEc|LINE|L1 96224 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 296-496 chr9 79161722 79161971 + 2 NA Intergenic Intergenic -16180 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 363-103 chr12 61699567 61699892 + 2 NA Intergenic MER61D|LTR|ERV1 493110 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 233-275 chr4 127748549 127748730 + 2 NA intron (NM_001318467, intron 2 of 6) L1MA7|LINE|L1 18239 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 307-224 chr2 22558792 22559034 + 2 NA Intergenic Intergenic 22434 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 252-208 chr2 113857435 113857649 + 2 NA intron (NR_110174, intron 2 of 4) intron (NR_110174, intron 2 of 4) -32392 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 244-362 chr8 56201651 56201836 + 2 NA intron (NM_002655, intron 1 of 4) MIRc|SINE|MIR 9530 NM_002655 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 318-54 chr10 26063170 26063389 + 2 NA intron (NM_017433, intron 10 of 34) L1MC|LINE|L1 129050 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 240-107 chr12 44217134 44217287 + 2 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 381129 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 545-98 chr18 76028021 76028529 + 2 NA Intergenic L3|LINE|CR1 -94723 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 283-60 chr10 77557859 77558027 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 79865 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 549-7 chr1 87859671 87860140 + 2 NA Intergenic MIR|SINE|MIR -488250 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 340-139 chr14 20615480 20615709 + 2 NA Intergenic Intergenic -24771 NM_001024822 493901 Hs.729466 NM_001024822 ENSG00000258436 RNASE12 HEL-S-85p|RAI1 ribonuclease A family member 12 (inactive) protein-coding 222-202 chr2 213332968 213333119 + 2 NA intron (NR_047660, intron 4 of 14) L1MA2|LINE|L1 48579 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 421-310 chr8 128430028 128430408 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 134461 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 329-77 chr10 104847033 104847268 + 2 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -180934 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 237-105 chr14 65088385 65088596 + 2 NA intron (NR_073138, intron 2 of 2) intron (NR_073138, intron 2 of 2) -1428 NR_045122 100506321 Hs.711267 NR_045122 ENSG00000259118 LOC100506321 - uncharacterized LOC100506321 ncRNA 772-31 chr2 220194840 220195482 + 2 NA Intergenic Intergenic -288596 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 386-81 chr12 129198063 129198355 + 2 NA intron (NM_133448, intron 5 of 8) L1MA7|LINE|L1 -10392 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 339-186 chr15 95692709 95692950 + 2 NA Intergenic L1MEf|LINE|L1 259736 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 500-184 chr3 73214259 73214632 + 2 NA Intergenic Intergenic 152786 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 334-431 chr5 113962789 113963062 + 2 NA Intergenic L1M5|LINE|L1 -399145 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 297-449 chr7 136247348 136247516 + 2 NA Intergenic Intergenic -270073 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 378-406 chr7 62798578 62798915 + 2 NA Intergenic ALR/Alpha|Satellite|centr 505310 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 405-274 chr6 41361614 41361854 + 2 NA Intergenic L1MD2|LINE|L1 26126 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 342-501 chr7 122877101 122877435 + 2 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) 9192 NM_001363398 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 216-237 chr3 176038559 176038739 + 2 NA Intergenic L1MA10|LINE|L1 -205902 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 405-187 chr20 60732339 60732670 + 2 NA Intergenic Intergenic 167942 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 260-296 chr3 187330170 187330380 + 2 NA Intergenic L1MEi|LINE|L1 -38110 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 731-17 chr11 111312601 111313321 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -7913 NM_001302644 399948 Hs.729225 NM_207429 COLCA1 C11orf92|CASC12|LOH11CR1F colorectal cancer associated 1 protein-coding 175-43 chr12 46547881 46548028 + 2 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 163847 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 128-19 chr14 68812692 68812800 + 2 NA Intergenic MIRb|SINE|MIR -16503 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 247-321 chr5 42406631 42406789 + 2 NA Intergenic L1M5|LINE|L1 -16729 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 256-233 chr20 24631571 24631765 + 2 NA intron (NM_024893, intron 3 of 3) intron (NM_024893, intron 3 of 3) 161707 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 275-9 chr1 94417774 94417943 + 2 NA promoter-TSS (NM_001122674) promoter-TSS (NM_001122674) -519 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 326-52 chr1 232856901 232857080 + 2 NA Intergenic MIRb|SINE|MIR 52098 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 360-327 chr4 60652742 60652967 + 2 NA Intergenic Intergenic -269765 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 190-68 chr16 63241089 63241240 + 2 NA Intergenic Intergenic -1204726 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 352-60 chr10 111929932 111930144 + 2 NA Intergenic Intergenic 253727 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 339-499 chr6 102546139 102546321 + 2 NA Intergenic Intergenic 1147245 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 343-554 chr8 121074377 121074701 + 2 NA Intergenic HERV16-int|LTR|ERVL -262493 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 329-375 chr3 101391773 101392001 + 2 NA intron (NM_001282803, intron 3 of 20) L1M2|LINE|L1 -71312 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 319-316 chr22 47886647 47886823 + 2 NA Intergenic (TGTTT)n|Simple_repeat|Simple_repeat 255061 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 268-344 chr6 63121336 63121527 + 2 NA Intergenic LTR33|LTR|ERVL 198546 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 514-270 chr7 52752333 52752773 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -283080 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 254-110 chr14 51096321 51096570 + 2 NA promoter-TSS (NM_052978) promoter-TSS (NM_052978) -741 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 298-20 chr1 176651635 176651805 + 2 NA intron (NM_021936, intron 3 of 4) L1M3f|LINE|L1 188545 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 227-332 chr7 3464067 3464238 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 162900 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 189-145 chr4 58934764 58934866 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -49467 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 440-5 chr1 83609686 83609971 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 163774 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 274-135 chr14 88702798 88702989 + 2 NA intron (NM_183387, intron 13 of 42) AluJb|SINE|Alu 90060 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 212-297 chr7 23685594 23685719 + 2 NA intron (NM_199136, intron 2 of 6) intron (NM_199136, intron 2 of 6) 5457 NM_001127364 340277 Hs.592178 NM_199136 ENSG00000188732 FAM221A C7orf46 family with sequence similarity 221 member A protein-coding 223-49 chr11 28811505 28811678 + 2 NA Intergenic Intergenic -334043 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 288-105 chr13 108067933 108068162 + 2 NA Intergenic AluSx3|SINE|Alu 146735 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 237-50 chr11 31009150 31009354 + 2 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) -16566 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 419-80 chr13 33897247 33897516 + 2 NA intron (NM_181558, intron 8 of 8) L1MA4|LINE|L1 79232 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 261-273 chr4 35451701 35451893 + 2 NA Intergenic L1MC|LINE|L1 792142 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 717-67 chr5 16384585 16385097 + 2 NA intron (NR_104625, intron 7 of 8) L2c|LINE|L2 56261 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 279-370 chr6 119590574 119590763 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 40860 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 334-536 chr8 86801452 86801688 + 2 NA Intergenic Intergenic -57895 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 663-56 chr2 18817721 18818352 + 2 NA Intergenic MIR|SINE|MIR 208935 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 432-284 chr8 63647402 63647641 + 2 NA Intergenic Intergenic -121909 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 275-254 chr3 148810615 148810844 + 2 NA Intergenic Intergenic -17082 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 335-505 chr7 53579445 53579719 + 2 NA Intergenic Intergenic 232349 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 290-398 chr6 138535223 138535424 + 2 NA intron (NM_020464, intron 1 of 6) AluJb|SINE|Alu -35829 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 620-37 chr14 47361582 47361979 + 2 NA intron (NM_001113498, intron 1 of 16) Charlie18a|DNA|hAT-Charlie -18534 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 610-41 chr13 29605756 29606325 + 2 NA Intergenic Intergenic -10352 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 367-50 chr10 57749211 57749417 + 2 NA Intergenic L1PA10|LINE|L1 -444755 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 564-180 chr6 164139952 164140366 + 2 NA Intergenic Intergenic -468675 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 435-150 chr3 26970592 26970944 + 2 NA Intergenic Intergenic 245755 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 492-272 chr8 134961361 134961819 + 2 NA Intergenic AluJb|SINE|Alu 111655 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 283-218 chr2 15031082 15031259 + 2 NA Intergenic Intergenic 398453 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 303-278 chr3 28471745 28471970 + 2 NA intron (NM_001324170, intron 3 of 6) L1MA2|LINE|L1 -103421 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 390-152 chr18 6347296 6347579 + 2 NA intron (NM_001365765, intron 1 of 18) L1MA10|LINE|L1 11593 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 234-408 chrX 89589770 89589942 + 2 NA Intergenic LTR48B|LTR|ERV1 -332052 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 350-548 chr8 137799245 137799443 + 2 NA Intergenic L1PA15|LINE|L1 284201 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 292-365 chr5 155661831 155662058 + 2 NA Intergenic MIRb|SINE|MIR 648189 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 308-311 chr3 190134652 190134845 + 2 NA intron (NR_126419, intron 2 of 3) L2a|LINE|L2 -12311 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 116-52 chr9 76641983 76642075 + 2 NA intron (NR_131751, intron 11 of 15) A-rich|Low_complexity|Low_complexity 50386 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 505-215 chr4 42851203 42851555 + 2 NA Intergenic L1PA16|LINE|L1 -41887 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 321-322 chr2 233156126 233156295 + 2 NA intron (NM_001017915, intron 9 of 26).2 intron (NM_001017915, intron 9 of 26).2 -95361 NM_198890 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 256-281 chr4 15433156 15433343 + 2 NA intron (NM_031911, intron 1 of 2) AluJo|SINE|Alu 5216 NM_031911 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 450-211 chr3 170799636 170799917 + 2 NA Intergenic Intergenic 70419 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 234-370 chr7 62867389 62867601 + 2 NA Intergenic ALR/Alpha|Satellite|centr 436561 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 197-43 chr11 77281672 77281822 + 2 NA intron (NM_182833, intron 3 of 16) L1MEg|LINE|L1 19919 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 115-17 chr17 60480741 60480822 + 2 NA intron (NM_006380, intron 3 of 12) LTR50|LTR|ERVL 45459 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 329-558 chr8 14154762 14155018 + 2 NA intron (NM_001322880, intron 4 of 6) MLT1G1|LTR|ERVL-MaLR 525200 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 365-219 chr2 198112502 198112779 + 2 NA intron (NM_006226, intron 5 of 5) intron (NM_006226, intron 5 of 5) 262457 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 934-22 chr3 190098060 190098837 + 2 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 22449 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 359-66 chr10 88183436 88183734 + 2 NA Intergenic L2|LINE|L2 319960 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 248-213 chr2 221081649 221081841 + 2 NA Intergenic AluSx1|SINE|Alu 490559 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 375-52 chr10 79192029 79192363 + 2 NA intron (NM_020338, intron 4 of 24) intron (NM_020338, intron 4 of 24) 123230 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 575-186 chr7 70796496 70797014 + 2 NA Intergenic AluJr|SINE|Alu -335389 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 534-209 chr5 178726514 178726875 + 2 NA intron (NM_005649, intron 3 of 4) intron (NM_005649, intron 3 of 4) 3965 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 438-99 chr18 41131985 41132339 + 2 NA Intergenic Intergenic 388515 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 333-616 chrX 29310958 29311270 + 2 NA intron (NM_014271, intron 3 of 10) intron (NM_014271, intron 3 of 10) -263164 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 263-346 chr5 178913242 178913503 + 2 NA intron (NM_030613, intron 3 of 4) intron (NM_030613, intron 3 of 4) 17459 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 335-353 chr3 94803408 94803681 + 2 NA Intergenic LTR16|LTR|ERVL -134719 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 377-402 chr8 87595382 87595586 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 278531 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 369-403 chr8 65900340 65900631 + 2 NA Intergenic Intergenic -58421 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 384-363 chr8 43556529 43556797 + 2 NA Intergenic HERVS71-int|LTR|ERV1 264221 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 485-281 chr8 58293140 58293428 + 2 NA Intergenic L1M5|LINE|L1 -21183 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 303-373 chr5 118343225 118343450 + 2 NA Intergenic Intergenic 60763 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 489-35 chr10 99093723 99094130 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 141949 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 353-360 chr4 31381333 31381632 + 2 NA Intergenic Intergenic -125062 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 301-316 chr4 63434165 63434392 + 2 NA Intergenic Intergenic 975172 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 401-160 chr2 67972400 67972730 + 2 NA Intergenic Intergenic 90439 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 310-55 chr10 95956353 95956589 + 2 NA intron (NM_001349008, intron 11 of 34) L1MEd|LINE|L1 -43620 NM_001159747 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 405-273 chr6 40458685 40459038 + 2 NA intron (NM_020737, intron 1 of 2) MLT1J|LTR|ERVL-MaLR 80524 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 426-179 chr3 51180697 51180987 + 2 NA intron (NM_004947, intron 12 of 52) intron (NM_004947, intron 12 of 52) -204449 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 366-460 chr8 138561717 138561957 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -64107 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 236-75 chr11 112760417 112760610 + 2 NA Intergenic Intergenic -200907 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 206-196 chr5 3044452 3044656 + 2 NA Intergenic Intergenic 126700 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 270-180 chr2 65741805 65742016 + 2 NA Intergenic Intergenic -309311 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 123-44 chr4 167917637 167917720 + 2 NA Intergenic Intergenic -174859 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 258-67 chr11 69350260 69350422 + 2 NA Intergenic (TAATTAA)n|Simple_repeat|Simple_repeat 56186 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 317-463 chr7 110205810 110205989 + 2 NA Intergenic Intergenic -245686 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 368-194 chr17 70058039 70058401 + 2 NA intron (NR_104130, intron 1 of 1) intron (NR_104130, intron 1 of 1) 6949 NR_104130 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 200-98 chr16 61383300 61383445 + 2 NA Intergenic Intergenic -327606 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 420-193 chr3 161562078 161562384 + 2 NA Intergenic Intergenic 65423 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 273-282 chr3 6545269 6545470 + 2 NA Intergenic Intergenic 260080 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 222-207 chr20 43804523 43804695 + 2 NA Intergenic L1MB7|LINE|L1 -77607 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 506-81 chr14 27467584 27468055 + 2 NA intron (NR_148991, intron 2 of 2) L1M3e|LINE|L1 -144769 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 303-379 chr5 150953539 150953732 + 2 NA Intergenic Intergenic -7051 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 291-314 chr4 41889104 41889318 + 2 NA Intergenic Intergenic -6600 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 291-443 chr8 70772406 70772635 + 2 NA Intergenic Intergenic 103181 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 197-30 chr10 78653063 78653218 + 2 NA Intergenic Intergenic 385798 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 208-35 chr11 17679552 17679685 + 2 NA Intergenic Intergenic 17321 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 226-360 chr8 129815934 129816056 + 2 NA Intergenic L1PA16|LINE|L1 -29371 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 215-182 chr22 17463249 17463398 + 2 NA intron (NM_001290047, intron 1 of 18) L2a|LINE|L2 93863 NM_001290047 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2 histone acetyl-lysine reader protein-coding 400-335 chr8 64838750 64839062 + 2 NA Intergenic Intergenic -40169 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 345-541 chr8 135075096 135075427 + 2 NA Intergenic Intergenic -158870 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 376-10 chr1 80578254 80578522 + 2 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 42633 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 303-459 chr8 92621194 92621447 + 2 NA intron (NR_125827, intron 3 of 4) MLT1D|LTR|ERVL-MaLR 34174 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 274-143 chr15 69823699 69823877 + 2 NA Intergenic Intergenic -11446 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 471-146 chr20 11254976 11255423 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 18184 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 337-173 chr15 56131448 56131759 + 2 NA intron (NM_001370561, intron 7 of 11) L1M5|LINE|L1 58329 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 242-225 chr22 46783009 46783159 + 2 NA intron (NM_001284305, intron 1 of 12) L1MB7|LINE|L1 9157 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 192-136 chr3 154714762 154714919 + 2 NA Intergenic Intergenic -284650 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 279-10 chr1 79595114 79595358 + 2 NA Intergenic Intergenic -588506 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 294-238 chr2 147551994 147552252 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -292394 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 326-187 chr16 57597672 57597855 + 2 NA Intergenic L1ME3B|LINE|L1 -21975 NM_001370435 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 251-232 chr3 55763871 55764048 + 2 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) 88635 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 200-147 chr2 215647299 215647481 + 2 NA intron (NR_037195, intron 5 of 9) MLT1C|LTR|ERVL-MaLR -70653 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 393-170 chr2 130885922 130886121 + 2 NA intron (NM_001367493, intron 1 of 13) L1ME3B|LINE|L1 49107 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 296-140 chr14 57121589 57121836 + 2 NA Intergenic Intergenic 147193 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 313-508 chr7 96232703 96232882 + 2 NA intron (NR_027662, intron 3 of 16) MIRb|SINE|MIR -13036 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 203-229 chr8 86997707 86997880 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 131378 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 341-222 chr19 56361584 56361832 + 2 NA intron (NM_001322072, intron 2 of 6) L1PA10|LINE|L1 -6391 NR_003127 147947 Hs.467326 NM_194319 ENSG00000240225 ZNF542P ZNF542 zinc finger protein 542, pseudogene pseudo 362-471 chr9 137954963 137955164 + 2 NA intron (NM_001243812, intron 7 of 45) intron (NM_001243812, intron 7 of 45) -8003 NR_132978 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 200-210 chr5 40628817 40628979 + 2 NA Intergenic L2a|LINE|L2 -51017 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 337-265 chr2 116672817 116673050 + 2 NA Intergenic Intergenic -1141758 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 204-2 chr1 55667197 55667351 + 2 NA Intergenic (ATACATGT)n|Simple_repeat|Simple_repeat 277689 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 245-342 chr8 75057813 75058012 + 2 NA Intergenic L1PA10|LINE|L1 57757 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 219-174 chr2 103274721 103274921 + 2 NA Intergenic Intergenic -290392 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 237-274 chr4 136356424 136356625 + 2 NA Intergenic Intergenic -442844 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 621-90 chr5 12118643 12119119 + 2 NA Intergenic Intergenic -214435 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 222-92 chr12 111797480 111797668 + 2 NA intron (NM_000690, intron 9 of 12) AluSx|SINE|Alu -2260 NR_106819 102465456 NR_106819 ENSG00000274697 MIR6761 hsa-mir-6761 microRNA 6761 ncRNA 335-118 chr12 16740561 16740882 + 2 NA Intergenic Intergenic -132507 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 261-46 chr10 111750966 111751193 + 2 NA Intergenic L1M8|LINE|L1 432686 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 150-102 chr7 85542910 85543035 + 2 NA Intergenic L1MCa|LINE|L1 121850 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 248-320 chr5 93064690 93064875 + 2 NA Intergenic L1MC5a|LINE|L1 506561 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 240-39 chr10 34061888 34062112 + 2 NA Intergenic Intergenic -289320 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 274-312 chr5 87963477 87963713 + 2 NA Intergenic Intergenic 301553 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 571-158 chr7 132165103 132165466 + 2 NA intron (NM_020911, intron 22 of 31) intron (NM_020911, intron 22 of 31) -95577 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 332-258 chr2 113228929 113229229 + 2 NA intron (NM_013953, intron 7 of 9) intron (NM_013953, intron 7 of 9) -6448 NR_047570 654433 Hs.656660 NR_015377 ENSG00000189223 PAX8-AS1 - PAX8 antisense RNA 1 ncRNA 215-298 chr7 52309363 52309576 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -726164 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 568-24 chr11 25585173 25585568 + 2 NA Intergenic MIRb|SINE|MIR -603753 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 254-271 chr4 56556315 56556564 + 2 NA intron (NM_001256475, intron 3 of 8) L2|LINE|L2 25833 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 459-67 chr12 112731446 112731846 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -36470 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 353-479 chr7 27713904 27714241 + 2 NA Intergenic Intergenic -25301 NM_001206901 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 416-85 chr12 13696423 13696749 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 283770 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 467-229 chr5 94596895 94597233 + 2 NA intron (NM_001145678, intron 1 of 20) L1PREC2|LINE|L1 21540 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 701-78 chr5 133670601 133671185 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -58352 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 463-214 chr4 111686343 111686650 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie -458958 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 335-238 chr2 41425974 41426163 + 2 NA Intergenic L1M3|LINE|L1 -451487 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 420-166 chr20 22016935 22017296 + 2 NA Intergenic Intergenic -36975 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 336-152 chr13 86952026 86952255 + 2 NA Intergenic Intergenic 40220 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 659-32 chr14 60478739 60479311 + 2 NA intron (NM_174978, intron 4 of 17) intron (NM_174978, intron 4 of 17) 7038 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 219-377 chr9 28336846 28337012 + 2 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 382376 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 352-13 chr1 68038180 68038493 + 2 NA intron (NR_040077, intron 2 of 9) L1MDb|LINE|L1 13295 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 182-134 chr5 25426377 25426524 + 2 NA Intergenic Intergenic 235497 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 209-159 chr2 118915328 118915527 + 2 NA Intergenic Intergenic -26742 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 456-342 chr9 78883915 78884348 + 2 NA Intergenic L2c|LINE|L2 261535 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 118-2 chr1 66358108 66358217 + 2 NA intron (NM_001037339, intron 2 of 9) MIR3|SINE|MIR 3627 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 251-190 chr2 178619376 178619587 + 2 NA intron (NM_001256850, intron 200 of 312) intron (NM_001256850, intron 200 of 312) 96290 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 301-29 chr1 232702192 232702362 + 2 NA Intergenic AluSp|SINE|Alu -15794 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 287-126 chr13 109434018 109434198 + 2 NA Intergenic Intergenic 33412 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 261-225 chr21 30971628 30971805 + 2 NA Intergenic Intergenic 66760 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 190-25 chr11 40842520 40842672 + 2 NA intron (NM_020929, intron 1 of 4) L1MA8|LINE|L1 -549466 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 474-187 chr3 135610365 135610708 + 2 NA Intergenic L1PB4|LINE|L1 -355192 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 374-277 chr4 58621510 58621826 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -85340 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 522 chr1 9035863 9036201 + 2 NA 3' UTR (NM_001328620, exon 12 of 12) 3' UTR (NM_001328620, exon 12 of 12) -9687 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 311-550 chr9 115407465 115407732 + 2 NA Intergenic Intergenic 265780 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 732-62 chr3 97423405 97423910 + 2 NA intron (NM_001080448, intron 6 of 17) L1PA13|LINE|L1 -15950 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 242-444 chrX 75292395 75292562 + 2 NA intron (NR_030774, intron 1 of 7) intron (NR_030774, intron 1 of 7) 18393 NM_145052 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 399-252 chr5 68467844 68468080 + 2 NA Intergenic Intergenic 175385 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 399-49 chr11 18218404 18218633 + 2 NA Intergenic L1M1|LINE|L1 9233 NR_026563 494141 Hs.446327 NR_026541 ENSG00000189332 SLC25A51P4 - SLC25A51 pseudogene 4 pseudo 352-75 chr11 35869842 35870133 + 2 NA Intergenic HAL1|LINE|L1 -73994 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 428-192 chr3 139964413 139964772 + 2 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 29407 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 530-261 chr8 128218979 128219319 + 2 NA Intergenic Intergenic 69033 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 350-399 chr5 65162040 65162261 + 2 NA intron (NR_135689, intron 25 of 25) intron (NR_135689, intron 25 of 25) 319770 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 215-320 chr8 119947223 119947408 + 2 NA intron (NM_022783, intron 3 of 8) intron (NM_022783, intron 3 of 8) 73593 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 350-4 chr1 67514743 67514982 + 2 NA Intergenic L1M8|LINE|L1 -84460 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 493-305 chr8 139435367 139435696 + 2 NA Intergenic Intergenic 267592 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 372-231 chr2 68364287 68364479 + 2 NA promoter-TSS (NM_002664) promoter-TSS (NM_002664) -899 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 166-9 chr10 78822312 78822461 + 2 NA Intergenic LTR16|LTR|ERVL 245062 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 257-62 chr11 55602091 55602254 + 2 NA Intergenic Intergenic 2226 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 581-43 chr14 37832796 37833134 + 2 NA intron (NM_001368142, intron 11 of 12) AluSc|SINE|Alu 60582 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 329-359 chr3 43250098 43250337 + 2 NA Intergenic FLAM_A|SINE|Alu -36295 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 436-251 chr5 141379391 141379813 + 2 NA intron (NM_018919, intron 1 of 3) intron (NM_018919, intron 1 of 3) -3140 NM_032087 56108 Hs.368160 NM_018920 ENSG00000253537 PCDHGA7 PCDH-GAMMA-A7 protocadherin gamma subfamily A, 7 protein-coding 358-493 chr8 125704176 125704524 + 2 NA Intergenic LTR16B1|LTR|ERVL 246847 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 201-238 chr8 84548600 84548736 + 2 NA intron (NM_001354308, intron 3 of 9) L1M8|LINE|L1 133184 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 155-73 chr4 62403392 62403536 + 2 NA Intergenic Intergenic -241699 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 600-43 chr16 8423999 8424375 + 2 NA Intergenic Intergenic 165651 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 197-141 chr3 136456855 136457016 + 2 NA intron (NM_005862, intron 13 of 33) L1M2|LINE|L1 206595 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 221-256 chr5 167282160 167282353 + 2 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -113855 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 393-51 chr11 43630394 43630750 + 2 NA Intergenic Intergenic 49178 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 408-193 chr21 20233118 20233492 + 2 NA Intergenic L1MA5|LINE|L1 25380 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 342-511 chr8 61357073 61357364 + 2 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 69248 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 175-125 chr5 16333373 16333492 + 2 NA Intergenic L1MC1|LINE|L1 107670 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 204-125 chr18 53836589 53836738 + 2 NA Intergenic L1PA15|LINE|L1 -255604 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 290-422 chr7 52355288 52355509 + 2 NA Intergenic Intergenic -680235 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 495-27 chr10 68920526 68920845 + 2 NA intron (NM_024045, intron 8 of 14) AluSx1|SINE|Alu 19370 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 444-61 chr13 77390124 77390495 + 2 NA Intergenic Intergenic -63215 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 151-45 chr20 52127742 52127870 + 2 NA intron (NM_199427, intron 5 of 8) intron (NM_199427, intron 5 of 8) -22322 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 380-85 chr12 15122253 15122575 + 2 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) -29509 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 516-256 chr8 124101877 124102198 + 2 NA intron (NM_001039112, intron 38 of 40) MER4B|LTR|ERV1 -61255 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 275-392 chrX 6960022 6960289 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -187135 NM_001320750 412 Hs.522578 NM_000351 ENSG00000101846 STS ARSC|ARSC1|ASC|ES|SSDD|XLI steroid sulfatase protein-coding 358-305 chr3 110996337 110996534 + 2 NA Intergenic L1ME3D|LINE|L1 73524 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 530-3 chr1 36904555 36904976 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 129750 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 296-127 chr13 108874023 108874244 + 2 NA intron (NM_015011, intron 12 of 34) intron (NM_015011, intron 12 of 34) 244522 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 520-315 chr8 139534424 139534809 + 2 NA Intergenic Intergenic 168507 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 273-57 chr10 75828803 75829013 + 2 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 46147 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 253-23 chr1 177566119 177566297 + 2 NA Intergenic Intergenic -134316 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 582-158 chr8 121191847 121192263 + 2 NA Intergenic LTR33|LTR|ERVL -380009 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 220-29 chr1 211073892 211074080 + 2 NA intron (NM_002238, intron 5 of 10) intron (NM_002238, intron 5 of 10) 59388 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 348-62 chr10 93884560 93884765 + 2 NA Intergenic L1MA3|LINE|L1 -9316 NM_001345993 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 411-129 chr18 38586037 38586361 + 2 NA Intergenic Intergenic 929064 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 203-190 chr5 149751148 149751313 + 2 NA intron (NM_001172698, intron 1 of 10) intron (NM_001172698, intron 1 of 10) 18405 NR_029870 494327 NR_029870 ENSG00000199047 MIR378A MIR378|MIRN378|hsa-mir-378|hsa-mir-378a|miRNA378 microRNA 378a ncRNA 341-90 chr11 82536864 82537190 + 2 NA Intergenic Intergenic -133114 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 233-292 chr5 34544227 34544451 + 2 NA Intergenic LTR49|LTR|ERV1 -111989 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 276-101 chr12 16638043 16638267 + 2 NA Intergenic L2c|LINE|L2 -29941 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 396-16 chr1 101471311 101471645 + 2 NA Intergenic Intergenic 147641 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 546-51 chr12 24186290 24186650 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -25951 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 122-42 chr5 9442757 9442848 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -68531 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 250-141 chr15 79614281 79614492 + 2 NA Intergenic AluJr|SINE|Alu 181870 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 319-300 chr21 21870488 21870724 + 2 NA Intergenic L1MA3|LINE|L1 123621 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 305-24 chr1 107225090 107225299 + 2 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 77125 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 324-275 chr2 114979596 114979796 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -84877 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 161-17 chr11 42223172 42223288 + 2 NA intron (NR_038309, intron 4 of 5) intron (NR_038309, intron 4 of 5) 30460 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 243-383 chr6 43931459 43931634 + 2 NA intron (NR_024478, intron 1 of 1) MIR3|SINE|MIR 40518 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 HI-LNC77 long intergenic non-protein coding RNA 1512 ncRNA 495-51 chr12 114905230 114905544 + 2 NA Intergenic Intergenic -221212 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 213-227 chr5 33085747 33085911 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 138386 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 325-144 chr13 27760319 27760571 + 2 NA Intergenic AluJb|SINE|Alu -32038 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 361-52 chr10 88194591 88194786 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 331063 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 395-43 chr10 85303946 85304212 + 2 NA Intergenic Intergenic -105141 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 199-233 chr8 49399181 49399315 + 2 NA Intergenic Intergenic 112932 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 378-199 chr18 76271977 76272223 + 2 NA Intergenic Intergenic 62590 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 250-18 chr1 115549988 115550156 + 2 NA Intergenic Intergenic -91898 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 292-116 chr12 123177554 123177761 + 2 NA intron (NR_103517, intron 15 of 23) intron (NR_103517, intron 15 of 23) 55484 NM_022782 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 352-369 chr4 66976445 66976635 + 2 NA Intergenic Intergenic 445460 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 251-44 chr10 115946552 115946708 + 2 NA 3' UTR (NM_207303, exon 29 of 29) 3' UTR (NM_207303, exon 29 of 29) 248159 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 313-407 chr4 137037067 137037243 + 2 NA intron (NR_149105, intron 2 of 3) intron (NR_149105, intron 2 of 3) -156601 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 355-168 chr15 37480310 37480545 + 2 NA Intergenic L1MEg|LINE|L1 -379116 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 406-74 chr14 45615644 45615847 + 2 NA Intergenic Intergenic 99857 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 378-206 chr19 52328437 52328657 + 2 NA Intergenic Intergenic -7696 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 267-444 chr9 27848077 27848315 + 2 NA Intergenic Intergenic -274330 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 177-45 chr13 93759624 93759724 + 2 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 98799 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 423-218 chr5 27489767 27490105 + 2 NA intron (NR_038848, intron 3 of 4) L2|LINE|L2 17644 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 366-346 chr5 95388314 95388595 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -2912 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 494-72 chr14 79209356 79209701 + 2 NA intron (NR_073547, intron 14 of 20) L2a|LINE|L2 9546 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 377-84 chr12 24982462 24982825 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 14822 NM_001101339 196415 Hs.434453 NM_001101339 C12orf77 - chromosome 12 open reading frame 77 protein-coding 345-374 chr4 22535956 22536173 + 2 NA Intergenic AluSg|SINE|Alu -19998 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 599-145 chr9 96685148 96685620 + 2 NA Intergenic Intergenic -30067 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 304-466 chr6 94657026 94657183 + 2 NA Intergenic L1M1|LINE|L1 920347 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 157-77 chr21 30876885 30876999 + 2 NA Intergenic L2b|LINE|L2 4638 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 416-142 chr17 61431297 61431663 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 19729 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 301-367 chr5 120943289 120943477 + 2 NA Intergenic Intergenic -379167 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 486-120 chr18 5741016 5741440 + 2 NA Intergenic L1ME4a|LINE|L1 -7591 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 243-468 chr9 12448903 12449111 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -244378 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 416-192 chr2 204513367 204513652 + 2 NA Intergenic L1ME4a|LINE|L1 -31966 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 243-421 chr7 62793170 62793341 + 2 NA Intergenic ALR/Alpha|Satellite|centr 510801 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 285-125 chr14 78856023 78856277 + 2 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -343832 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 274-357 chr7 72162624 72162787 + 2 NA intron (NM_001363460, intron 2 of 5) AluSz|SINE|Alu 174686 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 249-362 chr6 139502785 139502941 + 2 NA Intergenic L1MC5a|LINE|L1 -28267 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 297-121 chr13 74597408 74597636 + 2 NA Intergenic Intergenic 44679 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 224-24 chr1 237136237 237136438 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 94153 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 470-206 chr5 5746981 5747316 + 2 NA Intergenic Intergenic 324471 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 372-265 chr2 180428097 180428375 + 2 NA Intergenic L1MA3|LINE|L1 -263868 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 291-6 chr1 69831442 69831657 + 2 NA intron (NM_001370785, intron 5 of 26) intron (NM_001370785, intron 5 of 26) -87773 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 439-184 chr3 80954629 80954943 + 2 NA Intergenic ALR/Alpha|Satellite|centr -39082 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 460-202 chr3 95250870 95251233 + 2 NA Intergenic L1MB8|LINE|L1 312788 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 318-419 chr4 154933020 154933321 + 2 NA Intergenic L1MA9|LINE|L1 151665 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 538-265 chrX 155406188 155406580 + 2 NA Intergenic L1MA9|LINE|L1 -23186 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 408-157 chr2 56540139 56540368 + 2 NA Intergenic Intergenic -354483 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 295-439 chr7 54970780 54970947 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -48154 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 682-76 chr4 80343668 80344231 + 2 NA intron (NM_152770, intron 1 of 5) L1PA10|LINE|L1 8229 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 202-205 chr5 40703579 40703708 + 2 NA Intergenic AluSc|SINE|Alu 23728 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 485-192 chr3 183579185 183579526 + 2 NA Intergenic AluSx|SINE|Alu -23649 NM_130446 89857 Hs.659147 NM_130446 ENSG00000172578 KLHL6 - kelch like family member 6 protein-coding 260-127 chr14 51505494 51505653 + 2 NA intron (NM_001042481, intron 1 of 14) L2b|LINE|L2 16445 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 327-109 chr12 22021981 22022204 + 2 NA Intergenic Intergenic -24082 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 457-237 chr7 75561305 75561558 + 2 NA intron (NM_005338, intron 12 of 30) intron (NM_005338, intron 12 of 30) -33308 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 242-46 chr10 114877482 114877638 + 2 NA intron (NM_001135051, intron 16 of 16) MER5B|DNA|hAT-Charlie 55780 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 495-41 chr12 14507198 14507561 + 2 NA intron (NM_024829, intron 8 of 10) intron (NM_024829, intron 8 of 10) -60353 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 305-260 chr2 78397432 78397673 + 2 NA Intergenic L1PB1|LINE|L1 -106821 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 194-146 chr4 66872067 66872200 + 2 NA Intergenic Intergenic 549867 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 339-523 chr7 27014645 27014828 + 2 NA Intergenic L1MA1|LINE|L1 81264 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 379-22 chr1 164410941 164411216 + 2 NA Intergenic L1MB3|LINE|L1 -148282 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 513-124 chr2 22808387 22808807 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 272118 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 355-370 chr4 83572861 83573156 + 2 NA intron (NM_001256421, intron 3 of 12) L3|LINE|CR1 36900 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 363-272 chr21 32110031 32110383 + 2 NA Intergenic L1MD|LINE|L1 -23912 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 322-279 chr2 185760584 185760768 + 2 NA intron (NM_173651, intron 9 of 22) L1ME1|LINE|L1 -20199 NR_110217 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 559-172 chr7 62829519 62829905 + 2 NA Intergenic ALR/Alpha|Satellite|centr 474344 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 329-9 chr1 62209533 62209796 + 2 NA intron (NM_019079, intron 3 of 3) intron (NM_019079, intron 3 of 3) 14815 NM_019079 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 348-404 chr5 45356950 45357282 + 2 NA intron (NM_021072, intron 4 of 7) HAL1|LINE|L1 339264 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 288-24 chr1 159391965 159392185 + 2 NA Intergenic L1MD|LINE|L1 -5390 NM_001363557 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 361-222 chr2 100114973 100115197 + 2 NA intron (NM_002285, intron 1 of 23) L1MEg|LINE|L1 -9502 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 326-7 chr1 47407289 47407528 + 2 NA intron (NR_126355, intron 3 of 4) L1ME4a|LINE|L1 -8877 NM_012186 2301 Hs.112968 NM_012186 ENSG00000186790 FOXE3 AAT11|ASGD2|CTRCT34|FKHL12|FREAC8 forkhead box E3 protein-coding 282-429 chr7 68926185 68926362 + 2 NA Intergenic Intergenic 671351 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 344-234 chr2 48033386 48033728 + 2 NA Intergenic AluSz6|SINE|Alu -127764 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 289-90 chr11 115998207 115998445 + 2 NA Intergenic L2c|LINE|L2 -238126 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 300-419 chr7 35793563 35793823 + 2 NA intron (NR_120511, intron 2 of 5) intron (NR_120511, intron 2 of 5) 6932 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 223-187 chr20 52762090 52762235 + 2 NA Intergenic Intergenic 141324 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 226-80 chr13 65210778 65210955 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -655181 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 414-135 chr18 73729140 73729393 + 2 NA Intergenic Intergenic 404325 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 250-257 chr21 35152696 35152860 + 2 NA Intergenic L1MEg|LINE|L1 -103480 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 393-385 chr9 78564413 78564610 + 2 NA Intergenic Intergenic 267386 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 315-407 chr6 947835 948038 + 2 NA Intergenic L2a|LINE|L2 79438 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 215-11 chr1 164477724 164477904 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -81546 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 185-48 chr12 81516180 81516338 + 2 NA intron (NM_001220474, intron 2 of 30) MIRb|SINE|MIR -3868 NM_001282536 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 214-203 chr3 56626130 56626263 + 2 NA intron (NM_001365638, intron 20 of 22) intron (NM_001365638, intron 20 of 22) 37850 NM_015224 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 344-396 chr5 122362325 122362635 + 2 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) -28609 NM_001308108 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 320-562 chr8 114346238 114346454 + 2 NA Intergenic Intergenic -909407 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 152-62 chr3 42320343 42320466 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -54219 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 336-274 chr2 88293154 88293370 + 2 NA Intergenic L1MEf|LINE|L1 120123 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 467-181 chr3 83387666 83387974 + 2 NA Intergenic Intergenic 1401678 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 368-432 chr7 108358578 108358883 + 2 NA intron (NM_001371131, intron 2 of 33) intron (NM_001371131, intron 2 of 33) -30204 NM_001371176 444-139 chr20 20249720 20250076 + 2 NA intron (NM_015585, intron 19 of 26) intron (NM_015585, intron 19 of 26) -118206 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 259-409 chr8 120136403 120136608 + 2 NA intron (NM_021110, intron 1 of 47) L1MEb|LINE|L1 11403 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 412-119 chr17 51921686 51921960 + 2 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 236891 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 262-149 chr15 95219215 95219397 + 2 NA Intergenic L1MA8|LINE|L1 107794 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 296-38 chr10 32524312 32524593 + 2 NA intron (NR_109826, intron 11 of 16) L1MA2|LINE|L1 78312 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 276-52 chr10 41766448 41766615 + 2 NA Intergenic ALR/Alpha|Satellite|centr 601514 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 201-142 chr21 30286105 30286262 + 2 NA Intergenic Intergenic -3233 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 376-4 chr1 57926700 57926976 + 2 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 66257 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 304-486 chr7 44246317 44246496 + 2 NA intron (NM_172081, intron 6 of 18) (TGCACA)n|Simple_repeat|Simple_repeat 45428 NM_006555 10652 Hs.520794 NM_006555 ENSG00000106636 YKT6 - YKT6 v-SNARE homolog protein-coding 619-72 chr2 190008021 190008570 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie 54434 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 369-152 chr16 80178831 80179148 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -361745 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 289-94 chr12 12568889 12569089 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie -6126 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 127-37 chr17 49768474 49768576 + 2 NA Intergenic Intergenic -4394 NM_030802 81558 Hs.514308 NM_030802 ENSG00000121104 FAM117A - family with sequence similarity 117 member A protein-coding 251-131 chr17 67557217 67557372 + 2 NA intron (NM_181671, intron 4 of 9) MLT1A|LTR|ERVL-MaLR -85709 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 251-121 chr16 31354121 31354308 + 2 NA promoter-TSS (NM_001286375) promoter-TSS (NM_001286375) -962 NM_001286375 3687 Hs.248472 NM_000887 ENSG00000140678 ITGAX CD11C|SLEB6 integrin subunit alpha X protein-coding 298-310 chr3 184070198 184070468 + 2 NA Intergenic L1M5|LINE|L1 17286 NM_130770 170572 Hs.632579 NM_130770 ENSG00000178084 HTR3C - 5-hydroxytryptamine receptor 3C protein-coding 228-318 chr7 50934078 50934249 + 2 NA Intergenic L1MA7|LINE|L1 -140710 NM_001371008 313-34 chr1 231436098 231436326 + 2 NA Intergenic L1MA5|LINE|L1 -11168 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 239-223 chr21 35896498 35896688 + 2 NA Intergenic Intergenic 10148 NR_144547 54036 Hs.228809 NR_144547 PPP1R2P2 - protein phosphatase 1 regulatory inhibitor subunit 2 pseudogene 2 pseudo 199-152 chr22 44520467 44520597 + 2 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -22299 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 319-380 chr4 75255365 75255608 + 2 NA Intergenic Intergenic -98590 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 205-105 chr15 80868734 80868931 + 2 NA intron (NM_018689, intron 1 of 28) MIR|SINE|MIR -26759 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 578-168 chr8 14359517 14359911 + 2 NA intron (NM_001322881, intron 2 of 6) L1M1|LINE|L1 493796 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 812-37 chr4 63515112 63515713 + 2 NA Intergenic L1MCa|LINE|L1 894038 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 289-290 chr3 22405197 22405403 + 2 NA Intergenic Intergenic 448161 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 430-16 chr1 195214765 195215058 + 2 NA Intergenic Intergenic 873804 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 465-122 chr19 58104922 58105331 + 2 NA intron (NM_001145542, intron 1 of 6) Tigger1|DNA|TcMar-Tigger -6763 NM_001145543 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 289-315 chr3 120269699 120269958 + 2 NA Intergenic L1MEc|LINE|L1 -25533 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 313-324 chr3 6479358 6479616 + 2 NA Intergenic L1ME3A|LINE|L1 325962 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 359-96 chr11 92395853 92396032 + 2 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 43846 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 587-28 chr11 81459012 81459450 + 2 NA Intergenic Intergenic 431605 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 674-34 chr16 51298039 51298439 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -146967 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 283-459 chr9 31319864 31320018 + 2 NA Intergenic Intergenic 61549 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 554-28 chr10 63341178 63341568 + 2 NA intron (NM_001322258, intron 2 of 24) Tigger4|DNA|TcMar-Tigger 31675 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 250-223 chr2 145772373 145772535 + 2 NA Intergenic LTR33|LTR|ERVL -814603 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 320-590 chr9 35306950 35307119 + 2 NA exon (NM_001371189, exon 9 of 40) exon (NM_001371189, exon 9 of 40) -34862 NM_001371188 339-285 chr2 163962726 163962947 + 2 NA Intergenic L1ME1|LINE|L1 -226828 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 246-55 chr10 90733420 90733602 + 2 NA Intergenic Intergenic 124528 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 430-174 chr20 61034994 61035332 + 2 NA Intergenic L1MCa|LINE|L1 -43901 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 221-323 chr9 95302929 95303119 + 2 NA intron (NM_001243744, intron 1 of 13) intron (NM_001243744, intron 1 of 13) 14230 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 252-81 chr11 116152181 116152415 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -392098 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 507-39 chr10 107338253 107338648 + 2 NA Intergenic L1ME3A|LINE|L1 -173744 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 332-12 chr1 80852945 80853226 + 2 NA Intergenic L2c|LINE|L2 211798 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 316-109 chr11 97085948 97086197 + 2 NA Intergenic Intergenic 577647 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 243-147 chr16 6824531 6824706 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 50809 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 243-278 chr3 64464784 64464961 + 2 NA Intergenic Intergenic -96474 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 331-190 chr16 50485695 50485995 + 2 NA Intergenic MIR|SINE|MIR -62551 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 311-171 chr16 10075133 10075366 + 2 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 106818 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 289-393 chr5 141303401 141303652 + 2 NA exon (NM_031947, exon 1 of 1) exon (NM_031947, exon 1 of 1) 523 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 176-29 chr14 76722156 76722269 + 2 NA Intergenic Intergenic -39256 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 221-316 chr8 143175357 143175550 + 2 NA Intergenic AluY|SINE|Alu -14799 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 405-22 chr10 25223995 25224294 + 2 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -47868 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 270-25 chr1 242688875 242689105 + 2 NA Intergenic L1MB3|LINE|L1 -164293 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 255-401 chr7 126468684 126468908 + 2 NA intron (NM_001371085, intron 9 of 10) L2|LINE|L2 589388 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 142-32 chr18 60955615 60955751 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -377747 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 130-56 chr3 88481925 88481997 + 2 NA Intergenic L2|LINE|L2 143505 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 334-495 chr7 45675825 45676073 + 2 NA intron (NM_021116, intron 8 of 19) L1MD1|LINE|L1 93069 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 288-420 chr7 109093530 109093735 + 2 NA Intergenic Intergenic -209045 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 348-552 chr9 31968823 31969088 + 2 NA Intergenic X9_LINE|LINE|L1 -415648 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 301-257 chr20 52377931 52378147 + 2 NA Intergenic L1MC4a|LINE|L1 -186054 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 202-123 chr2 100698907 100699047 + 2 NA Intergenic L1M4b|LINE|L1 95238 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 331-34 chr1 213857966 213858139 + 2 NA intron (NR_037850, intron 4 of 5) MIRc|SINE|MIR -66697 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 741-73 chr8 89505965 89506486 + 2 NA Intergenic L1ME3B|LINE|L1 251486 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 631-132 chrUn_GL000216v2 65836 66286 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 378-348 chr5 121544828 121545133 + 2 NA Intergenic Intergenic 222430 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 471-33 chr10 80299474 80299795 + 2 NA Intergenic Intergenic -9976 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 268-416 chr8 126455395 126455633 + 2 NA Intergenic Intergenic 102964 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 211-269 chr7 4290637 4290758 + 2 NA Intergenic Intergenic -155860 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 377-205 chr2 86598058 86598270 + 2 NA intron (NM_001198954, intron 3 of 7) intron (NM_001198954, intron 3 of 7) 25701 NM_001198952 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 325-327 chr22 35056530 35056821 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -9483 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 770-10 chr11 107229100 107229675 + 2 NA Intergenic Intergenic -210911 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 508-147 chr3 69499473 69499814 + 2 NA Intergenic Intergenic -113555 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 1052-19 chr3 112144510 112145180 + 2 NA intron (NM_001320531, intron 27 of 27).2 L1PA16|LINE|L1 11422 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 989-13 chr2 187662957 187663646 + 2 NA Intergenic Intergenic -108796 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 336-84 chr11 21030246 21030538 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 360806 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 286-88 chr12 34572525 34572678 + 2 NA Intergenic ALR/Alpha|Satellite|centr 550105 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 183-129 chr6 45333906 45334034 + 2 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 5640 NM_001024630 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 380-214 chr20 9274854 9275049 + 2 NA intron (NM_182797, intron 1 of 35) intron (NM_182797, intron 1 of 35) -32849 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 545-148 chr3 145376052 145376445 + 2 NA Intergenic L1M1|LINE|L1 692937 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 304-534 chr8 123907314 123907501 + 2 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 55420 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 222-77 chr12 970352 970531 + 2 NA intron (NM_001297419, intron 1 of 11) intron (NM_001297419, intron 1 of 11) 19600 NM_001297419 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 247-27 chr1 209741190 209741401 + 2 NA intron (NR_134510, intron 1 of 2) MLT1G1|LTR|ERVL-MaLR 1267 NR_134510 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 360-185 chr19 7315767 7315970 + 2 NA Intergenic L1ME3|LINE|L1 -21454 NM_001079817 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 213-136 chr2 53307171 53307382 + 2 NA Intergenic Intergenic -460507 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 260-355 chr5 123735317 123735499 + 2 NA Intergenic Intergenic 189991 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 407-338 chr8 141957883 141958153 + 2 NA Intergenic L1ME3A|LINE|L1 -171705 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 376-85 chr12 92628460 92628768 + 2 NA Intergenic Intergenic -74229 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 271-186 chr19 28224185 28224327 + 2 NA Intergenic LTR16A1|LTR|ERVL -382432 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 304-296 chr20 21599647 21599863 + 2 NA intron (NR_109880, intron 1 of 3) intron (NR_109880, intron 1 of 3) 29731 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 522-212 chr5 107896349 107896788 + 2 NA intron (NM_001163315, intron 7 of 8) Tigger2|DNA|TcMar-Tigger -225631 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 222-165 chr2 24525135 24525299 + 2 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) 33340 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 288-133 chr15 48296550 48296755 + 2 NA intron (NM_001184832, intron 24 of 26) intron (NM_001184832, intron 24 of 26) -34443 NM_001330286 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 380-271 chr4 30800384 30800587 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 80116 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 499 chr1 23878023 23878394 + 2 NA intron (NM_001841, intron 1 of 1) AluJb|SINE|Alu -9839 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 552-221 chr9 35768585 35769043 + 2 NA Intergenic LTR81B|LTR|Gypsy -14538 NM_001044264 692094 Hs.571601 NM_001044264 ENSG00000215183 MSMP PSMP microseminoprotein, prostate associated protein-coding 616-113 chr3 194384860 194385339 + 2 NA Intergenic CR1-3_Croc|LINE|CR1 14167 NM_004488 2814 Hs.73734 NM_004488 ENSG00000178732 GP5 CD42d|GPV glycoprotein V platelet protein-coding 323-386 chr5 5976543 5976739 + 2 NA Intergenic Intergenic 360651 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 516-238 chr7 84596099 84596536 + 2 NA Intergenic L1PA16|LINE|L1 63841 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 236-257 chr4 65865079 65865305 + 2 NA Intergenic Intergenic -194697 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 286-305 chr4 30882362 30882533 + 2 NA intron (NM_032457, intron 1 of 2) AluJr|SINE|Alu 162078 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 279-94 chr13 84639153 84639413 + 2 NA Intergenic L1PA15|LINE|L1 -144371 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 202-139 chr20 12627422 12627574 + 2 NA Intergenic L1MA9|LINE|L1 309465 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 239-238 chr3 59323227 59323388 + 2 NA Intergenic Intergenic -273275 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 132-64 chr5 116189592 116189687 + 2 NA non-coding (NR_146218, exon 7 of 7) non-coding (NR_146218, exon 7 of 7) -66104 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 353-264 chr2 175907642 175907986 + 2 NA Intergenic Intergenic 94453 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 414-90 chr14 80237961 80238294 + 2 NA intron (NR_038355, intron 2 of 8) THE1B|LTR|ERVL-MaLR -7070 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 269-261 chr3 191522131 191522357 + 2 NA intron (NR_120606, intron 1 of 6) L1M4|LINE|L1 61081 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 321-353 chr22 38796056 38796313 + 2 NA Intergenic L2c|LINE|L2 -2041 NM_005740 10126 Hs.632766 NM_005740 ENSG00000100246 DNAL4 MRMV3|PIG27 dynein axonemal light chain 4 protein-coding 471-270 chr8 120154240 120154538 + 2 NA intron (NM_021110, intron 2 of 47) intron (NM_021110, intron 2 of 47) 29287 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 308-131 chr13 109482930 109483132 + 2 NA Intergenic Intergenic 82335 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 476-150 chr2 146577251 146577578 + 2 NA Intergenic Intergenic -9643 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 397-70 chr13 50203541 50203857 + 2 NA intron (NR_109974, intron 2 of 6) MLT1C|LTR|ERVL-MaLR 31681 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 329-130 chr12 100792137 100792420 + 2 NA Intergenic Intergenic -2498 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 271-415 chr7 109744476 109744637 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 215657 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 374-327 chr5 162948125 162948464 + 2 NA Intergenic Intergenic -489277 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 226-368 chr8 138728803 138728948 + 2 NA intron (NM_152888, intron 23 of 64) MER5A|DNA|hAT-Charlie 185166 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 290-13 chr1 85739077 85739262 + 2 NA intron (NM_152890, intron 57 of 59) intron (NM_152890, intron 57 of 59) -30736 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 199-225 chr7 42202531 42202668 + 2 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 34610 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 297-93 chr11 133397616 133397886 + 2 NA intron (NM_001012393, intron 1 of 7) L4_C_Mam|LINE|RTE-X 134750 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 304-554 chr9 103629390 103629562 + 2 NA Intergenic LTR33|LTR|ERVL -304443 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 412-350 chr9 126969381 126969691 + 2 NA intron (NM_001190729, intron 3 of 17) intron (NM_001190729, intron 3 of 17) 7311 NM_001366401 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 415-39 chr10 118098373 118098764 + 2 NA non-coding (NR_026941, exon 4 of 4) non-coding (NR_026941, exon 4 of 4) -51627 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 380-161 chr18 13396101 13396326 + 2 NA intron (NM_181482, intron 3 of 5) intron (NM_181482, intron 3 of 5) 31321 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 484-283 chr9 36428250 36428612 + 2 NA Intergenic AluSc8|SINE|Alu -27233 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 381-19 chr1 180702874 180703086 + 2 NA intron (NR_137330, intron 2 of 12) L1HS|LINE|L1 70958 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 159-34 chr18 2128003 2128124 + 2 NA Intergenic L2c|LINE|L2 443442 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 205-186 chr3 89592832 89592988 + 2 NA Intergenic Intergenic 485289 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 267-318 chr5 15080323 15080544 + 2 NA Intergenic MIR3|SINE|MIR 186127 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 377-348 chr6 75347641 75347991 + 2 NA intron (NM_001300866, intron 4 of 6) intron (NM_001300866, intron 4 of 6) -35370 NR_125859 101928540 Hs.526972 NR_125859 LOC101928540 - uncharacterized LOC101928540 ncRNA 280-413 chr8 91378248 91378444 + 2 NA intron (NM_134266, intron 15 of 18) (AT)n|Simple_repeat|Simple_repeat 129027 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 138-6 chr1 232566336 232566463 + 2 NA Intergenic Intergenic -50791 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 135-57 chr5 114670534 114670666 + 2 NA intron (NR_130785, intron 1 of 12) L1M4|LINE|L1 94559 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 433-231 chr5 138972947 138973185 + 2 NA intron (NM_022464, intron 7 of 9) intron (NM_022464, intron 7 of 9) 97666 NM_001323989 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 294-517 chrX 88662628 88662890 + 2 NA Intergenic Intergenic -84466 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 268-66 chr11 46131809 46132010 + 2 NA Intergenic Intergenic -10924 NM_001352032 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 243-217 chr2 98971208 98971406 + 2 NA Intergenic L1MA4|LINE|L1 -35082 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 409-153 chr2 155420941 155421292 + 2 NA Intergenic Intergenic 722421 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 235-158 chr2 21059187 21059413 + 2 NA Intergenic Intergenic -15227 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 148-62 chr4 65649598 65649716 + 2 NA intron (NM_001281767, intron 1 of 16) L2|LINE|L2 19831 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 359-369 chr4 95680968 95681299 + 2 NA Intergenic L1MA9|LINE|L1 -132160 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 291-33 chr1 216507153 216507357 + 2 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -83807 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 395-287 chr6 48709407 48709690 + 2 NA Intergenic Intergenic -640859 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 275-300 chr5 140294538 140294715 + 2 NA intron (NM_002622, intron 2 of 3) intron (NM_002622, intron 2 of 3) 8475 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 415-54 chr12 20003014 20003282 + 2 NA Intergenic L1MA8|LINE|L1 -11537 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 566-206 chr9 16718207 16718696 + 2 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -8363 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 244-263 chr4 65794880 65795035 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -124462 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 359-17 chr1 95835269 95835555 + 2 NA Intergenic L1MA4A|LINE|L1 -156656 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 282-359 chr4 181407742 181407996 + 2 NA Intergenic HAL1|LINE|L1 -142840 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 384-91 chr12 120781189 120781498 + 2 NA intron (NM_139015, intron 6 of 10) L1M5|LINE|L1 55517 NM_001302554 35 Hs.507076 NM_000017 ENSG00000122971 ACADS ACAD3|SCAD acyl-CoA dehydrogenase short chain protein-coding 497-201 chr4 61362828 61363306 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 160895 NM_001371342 213-148 chr2 145525589 145525728 + 2 NA Intergenic Intergenic 857691 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 323-378 chr4 100464290 100464544 + 2 NA intron (NM_016242, intron 4 of 11) L1MB7|LINE|L1 53605 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 401-30 chr10 56692724 56693023 + 2 NA Intergenic Intergenic -331600 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 478-95 chr15 56297637 56297994 + 2 NA Intergenic Intergenic -52733 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 329-79 chr10 110053368 110053609 + 2 NA intron (NM_001121, intron 1 of 13) intron (NM_001121, intron 1 of 13) -45107 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 318-193 chr16 35375347 35375655 + 2 NA intron (NR_027079, intron 1 of 8) intron (NR_027079, intron 1 of 8) 11970 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 429-163 chr2 129383063 129383384 + 2 NA Intergenic L1MD2|LINE|L1 -109332 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 325-570 chr9 27229854 27230051 + 2 NA 3' UTR (NM_001290078, exon 21 of 21) 3' UTR (NM_001290078, exon 21 of 21) 52841 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 378-11 chr1 76541930 76542131 + 2 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 237237 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 311-521 chr8 121118982 121119172 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -307031 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 726-75 chr8 10217910 10218470 + 2 NA intron (NM_001135670, intron 2 of 4) AluSx|SINE|Alu 122539 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 322-191 chr16 63261670 63261886 + 2 NA Intergenic L1PA15|LINE|L1 -1225340 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 500-248 chr6 79594672 79595148 + 2 NA Intergenic L1M5|LINE|L1 -36419 NM_031469 83699 Hs.302772 NM_031469 ENSG00000198478 SH3BGRL2 - SH3 domain binding glutamate rich protein like 2 protein-coding 425-80 chr14 56517077 56517340 + 2 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 2877 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 301-394 chr6 55575415 55575702 + 2 NA intron (NM_001287746, intron 1 of 9) intron (NM_001287746, intron 1 of 9) 3656 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 293-52 chr11 17559944 17560166 + 2 NA intron (NM_001277269, intron 11 of 54) intron (NM_001277269, intron 11 of 54) 12682 NM_001292063 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 288-126 chr14 103212474 103212680 + 2 NA Intergenic L1M3|LINE|L1 -23549 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 435-128 chr2 157565002 157565379 + 2 NA intron (NM_001111031, intron 2 of 8) intron (NM_001111031, intron 2 of 8) 32370 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 359-54 chr10 43047916 43048111 + 2 NA Intergenic AluJr|SINE|Alu -29014 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 319-411 chr5 63174716 63174976 + 2 NA Intergenic Intergenic 596027 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 281-328 chr4 125986998 125987180 + 2 NA Intergenic Intergenic 479830 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 258-213 chr2 211695765 211695935 + 2 NA intron (NM_001042599, intron 12 of 26) intron (NM_001042599, intron 12 of 26) 730510 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 460-138 chr2 60274730 60275063 + 2 NA Intergenic Intergenic 108140 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 309-241 chr2 33646240 33646482 + 2 NA Intergenic Intergenic -46999 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 282-75 chr11 77606871 77607098 + 2 NA intron (NM_173039, intron 2 of 2) intron (NM_173039, intron 2 of 2) 17031 NM_173039 282679 Hs.503345 NM_173039 ENSG00000178301 AQP11 AQPX1 aquaporin 11 protein-coding 374-367 chr7 106039749 106040039 + 2 NA Intergenic L1MB7|LINE|L1 72418 NM_182715 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 394-292 chr6 137980719 137981075 + 2 NA Intergenic MIR|SINE|MIR -35097 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 600-96 chr4 142655014 142655416 + 2 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 191320 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 357-232 chr2 230500616 230500834 + 2 NA intron (NM_001080391, intron 19 of 28) intron (NM_001080391, intron 19 of 28) 83969 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 239-239 chr3 59736503 59736663 + 2 NA Intergenic Intergenic -78086 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 350-345 chr4 53984071 53984368 + 2 NA Intergenic L2a|LINE|L2 3063 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 357-128 chr15 27159131 27159358 + 2 NA intron (NR_120343, intron 1 of 2) AluSz6|SINE|Alu 2075 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 276-480 chr9 75573573 75573726 + 2 NA Intergenic Intergenic -316995 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 279-97 chr13 104651247 104651449 + 2 NA Intergenic Intergenic -814519 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 306-64 chr10 104995343 104995546 + 2 NA intron (NM_014978, intron 4 of 26) AluSg|SINE|Alu -329228 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 518-239 chr5 93270697 93271183 + 2 NA Intergenic Intergenic 300403 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 378-313 chr4 78841292 78841547 + 2 NA intron (NM_017593, intron 3 of 13) intron (NM_017593, intron 3 of 13) 65041 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 221-131 chr19 35199620 35199785 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 29023 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 444-99 chr18 2208888 2209316 + 2 NA Intergenic Intergenic 362403 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 300-464 chr8 82826801 82827047 + 2 NA Intergenic MLT2B4|LTR|ERVL -85180 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 397-16 chr1 182001073 182001365 + 2 NA Intergenic Intergenic 60493 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 550-154 chr3 185103053 185103405 + 2 NA intron (NM_001025266, intron 1 of 1) AluSx|SINE|Alu 49831 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 333-451 chr5 68400206 68400495 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 107773 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 239-340 chr5 164375151 164375336 + 2 NA Intergenic Intergenic 92159 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 382-395 chr7 145719700 145720058 + 2 NA Intergenic Intergenic -883826 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 529-221 chr8 126143972 126144489 + 2 NA Intergenic AluJb|SINE|Alu -181265 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 347-481 chr7 108490801 108491139 + 2 NA intron (NM_001256010, intron 7 of 9) intron (NM_001256010, intron 7 of 9) -34250 NM_001371123 316-311 chr20 6807686 6807913 + 2 NA Intergenic L1MB8|LINE|L1 40113 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 273-425 chr7 56261426 56261588 + 2 NA Intergenic L1MB3|LINE|L1 -145090 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 320-56 chr10 32685309 32685578 + 2 NA intron (NM_001321115, intron 22 of 43) MER107|DNA|hAT-Charlie 216029 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 588-129 chr5 123310018 123310373 + 2 NA Intergenic L1MC4|LINE|L1 113397 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 240-208 chr2 39978942 39979121 + 2 NA intron (NR_038441, intron 2 of 4) MER103C|DNA|hAT-Charlie 61397 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 293-166 chr18 52852620 52852796 + 2 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -384393 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 343-424 chr5 44738654 44738887 + 2 NA Intergenic L1PREC2|LINE|L1 70023 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 333-294 chr20 7649909 7650156 + 2 NA Intergenic Intergenic 278424 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 172-145 chr9 77470523 77470687 + 2 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 22956 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 294-325 chr4 33877891 33878148 + 2 NA Intergenic L1PA13|LINE|L1 161874 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 694-60 chr19 47986796 47987326 + 2 NA intron (NM_001128326, intron 1 of 5) MLT1C|LTR|ERVL-MaLR 5109 NM_001128326 100131137 Hs.651072 NM_001128326 ENSG00000188334 BSPH1 BSP1|ELSPBP2 binder of sperm protein homolog 1 protein-coding 367-75 chr11 50526687 50526963 + 2 NA Intergenic ALR/Alpha|Satellite|centr 117678 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 553-141 chr20 40907257 40907615 + 2 NA Intergenic LTR102_Mam|LTR|ERVL -73277 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 206-204 chr5 39416226 39416369 + 2 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 8683 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 156-58 chr2 223496736 223496857 + 2 NA Intergenic Intergenic 105565 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 333-456 chr5 85703682 85703986 + 2 NA Intergenic L3|LINE|CR1 -578610 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 307-389 chr5 104589013 104589208 + 2 NA Intergenic Intergenic -510364 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 458-124 chr2 41678107 41678521 + 2 NA Intergenic Intergenic -199241 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 276-235 chr2 102083348 102083593 + 2 NA intron (NM_001320978, intron 1 of 11) intron (NM_001320978, intron 1 of 11) 13080 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 338-200 chr16 64843471 64843765 + 2 NA Intergenic Intergenic 278445 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 358-460 chr7 152046454 152046795 + 2 NA intron (NM_001371468, intron 2 of 12) L1MA3|LINE|L1 20950 NR_163958 553-227 chr8 46329682 46330025 + 2 NA Intergenic GSAT|Satellite|centr 287790 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 587-45 chr14 63691993 63692394 + 2 NA intron (NM_030791, intron 2 of 2).2 MER94|DNA|hAT-Blackjack 35872 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 236-347 chr8 49751717 49751879 + 2 NA Intergenic L1ME1|LINE|L1 -157998 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 329-322 chr20 7228993 7229187 + 2 NA intron (NR_110609, intron 3 of 7) intron (NR_110609, intron 3 of 7) 25112 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 473-2 chr1 40136739 40137067 + 2 NA Intergenic L1MB2|LINE|L1 -24484 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 294-446 chr7 112812189 112812370 + 2 NA Intergenic Intergenic -21856 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 259-444 chrX 85218726 85218980 + 2 NA intron (NR_110651, intron 3 of 3) intron (NR_110651, intron 3 of 3) 8147 NR_110651 101928128 Hs.636014 NR_110651 LOC101928128 - uncharacterized LOC101928128 ncRNA 448-107 chr2 39904701 39905083 + 2 NA Intergenic Intergenic -12742 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 300-460 chr8 77950362 77950583 + 2 NA Intergenic Charlie13a|DNA|hAT-Charlie 499775 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 349-155 chr14 49020488 49020676 + 2 NA Intergenic Intergenic 565798 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 282-187 chr19 51994478 51994662 + 2 NA exon (NM_001321317, exon 4 of 4) exon (NM_001321317, exon 4 of 4) -7730 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 433-184 chr3 176103927 176104290 + 2 NA Intergenic Intergenic -140443 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 331-169 chr15 25141020 25141304 + 2 NA intron (NR_146177, intron 61 of 147) MER110-int|LTR|ERV1 5520 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 721-90 chr9 104817705 104818205 + 2 NA intron (NM_005502, intron 23 of 49) intron (NM_005502, intron 23 of 49) 53826 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 211-235 chr5 51145849 51146002 + 2 NA Intergenic Intergenic -175738 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 692-3 chr1 170168232 170168618 + 2 NA TTS (NM_001136107) TTS (NM_001136107) -5954 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 177-166 chr9 25928417 25928540 + 2 NA Intergenic Intergenic -138197 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 251-195 chr2 195030901 195031102 + 2 NA Intergenic Intergenic 300406 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 338-317 chr22 36701881 36702183 + 2 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 826 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 532-246 chr7 50101650 50102007 + 2 NA intron (NM_001161834, intron 1 of 8) intron (NM_001161834, intron 1 of 8) 5742 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 247-425 chr9 17619725 17619901 + 2 NA intron (NM_003026, intron 1 of 8) L1ME4a|LINE|L1 40747 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 153-65 chr22 41114598 41114707 + 2 NA intron (NM_001429, intron 1 of 30) intron (NM_001429, intron 1 of 30) 22060 NM_001429 2033 Hs.517517 NM_001429 ENSG00000100393 EP300 KAT3B|MKHK2|RSTS2|p300 E1A binding protein p300 protein-coding 343-243 chr2 67585861 67586195 + 2 NA Intergenic L1PA15-16|LINE|L1 188695 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 313-209 chr18 4757090 4757372 + 2 NA Intergenic Intergenic -301924 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 228-122 chr16 56697157 56697342 + 2 NA Intergenic L1M5|LINE|L1 14779 NM_005952 4501 Hs.374950 NM_005952 ENSG00000187193 MT1X MT-1l|MT1 metallothionein 1X protein-coding 119-47 chr3 82393591 82393689 + 2 NA intron (NR_147146, intron 3 of 8) L1MB3|LINE|L1 407498 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 482-46 chr10 127672400 127672827 + 2 NA Intergenic L1ME2|LINE|L1 -64572 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 266-56 chr11 14143873 14144098 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 181262 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 580-149 chr5 31826240 31826808 + 2 NA intron (NM_178140, intron 2 of 24) AluSz|SINE|Alu 109635 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 223-24 chr1 196564128 196564255 + 2 NA intron (NM_001287820, intron 1 of 26) L1MA8|LINE|L1 18290 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 320-180 chr16 3397596 3397871 + 2 NA 5' UTR (NM_001324341, exon 2 of 6) 5' UTR (NM_001324341, exon 2 of 6) 3271 NM_001324342 54925 Hs.592078 NM_017810 ENSG00000140987 ZSCAN32 HCCS-5|ZNF434 zinc finger and SCAN domain containing 32 protein-coding 520-283 chr7 70818123 70818537 + 2 NA Intergenic L1MA9|LINE|L1 -313814 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 387-137 chr17 5102712 5103021 + 2 NA Intergenic Intergenic -9069 NR_135658 101928000 Hs.660048 NR_135657 ENSG00000234327 LOC101928000 - uncharacterized LOC101928000 ncRNA 445-171 chr3 68501904 68502239 + 2 NA intron (NR_135532, intron 1 of 1) Tigger3|DNA|TcMar-Tigger 1434 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 290-321 chr4 103803900 103804166 + 2 NA Intergenic L1M4|LINE|L1 -84048 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 619-133 chr8 139911738 139912137 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 188598 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 353-72 chr10 105900184 105900386 + 2 NA Intergenic Intergenic -79952 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 588-59 chr18 68282302 68282759 + 2 NA Intergenic Intergenic 432578 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 317-294 chr3 13893655 13893825 + 2 NA Intergenic HAL1b|LINE|L1 -13669 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 483-297 chrX 86622315 86622689 + 2 NA intron (NM_001139515, intron 3 of 11) intron (NM_001139515, intron 3 of 11) 359534 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 502-213 chr5 18148236 18148717 + 2 NA Intergenic Intergenic 341202 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 414-348 chr9 28266402 28266758 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 452725 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 276-469 chr8 139945227 139945475 + 2 NA intron (NM_001160372, intron 19 of 22) L1MEb|LINE|L1 155184 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 388-278 chr5 56540328 56540629 + 2 NA intron (NR_161255, intron 2 of 5) intron (NR_161255, intron 2 of 5) -58709 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 330-167 chr14 100789501 100789708 + 2 NA Intergenic Intergenic -24887 NR_039729 100616495 NR_039729 ENSG00000266461 MIR2392 - microRNA 2392 ncRNA 469-127 chr2 50815706 50815993 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -119587 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 565-92 chr2 235527124 235527571 + 2 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -9426 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 249-34 chr10 6030841 6031026 + 2 NA intron (NM_000417, intron 1 of 7) L1ME2z|LINE|L1 31434 NM_001308242 3559 Hs.231367 NM_000417 ENSG00000134460 IL2RA CD25|IDDM10|IL2R|IMD41|TCGFR|p55 interleukin 2 receptor subunit alpha protein-coding 338-101 chr11 69243759 69244083 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -50234 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 474-161 chr2 222714836 222715122 + 2 NA Intergenic Intergenic 43321 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 309-278 chr2 153618434 153618680 + 2 NA Intergenic L1MA1|LINE|L1 -139795 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 550-182 chr5 62529284 62529810 + 2 NA intron (NM_016338, intron 21 of 29) intron (NM_016338, intron 21 of 29) -49188 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 291-328 chr4 111788685 111788919 + 2 NA Intergenic Intergenic -356652 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 216-282 chr5 100624650 100624788 + 2 NA Intergenic Intergenic 89345 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 455-87 chr16 20662162 20662533 + 2 NA intron (NM_001318890, intron 6 of 13) intron (NM_001318890, intron 6 of 13) 28909 NM_052956 116285 Hs.306812 NM_052956 ENSG00000166743 ACSM1 BUCS1|MACS1 acyl-CoA synthetase medium chain family member 1 protein-coding 203-26 chr10 67727991 67728141 + 2 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -31871 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 375-104 chr12 108020533 108020780 + 2 NA Intergenic Intergenic -108632 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 328-612 chr9 110201413 110201603 + 2 NA intron (NM_001012993, intron 1 of 1) intron (NM_001012993, intron 1 of 1) 6625 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 376-222 chr20 54313671 54313918 + 2 NA Intergenic Intergenic 105707 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 266-440 chr8 130823760 130823949 + 2 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 217055 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 573-29 chr10 111534931 111535348 + 2 NA Intergenic MIR1_Amn|SINE|MIR 420848 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 438-54 chr11 42907520 42907878 + 2 NA Intergenic MER4A1|LTR|ERV1 361670 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 245-237 chr3 110483634 110483874 + 2 NA Intergenic Intergenic 586205 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 480-264 chr6 156614115 156614415 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -163590 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 318-349 chr3 29203971 29204203 + 2 NA Intergenic Intergenic 76852 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 288-237 chr21 22685024 22685181 + 2 NA Intergenic Intergenic -394182 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 438-246 chr6 139034624 139035047 + 2 NA intron (NM_021243, intron 2 of 2) intron (NM_021243, intron 2 of 2) 6090 NM_021243 58527 Hs.600861 NM_021243 ENSG00000146386 ABRACL C6orf115|Costars|HSPC280|PRO2013 ABRA C-terminal like protein-coding 211-142 chr2 80411736 80411892 + 2 NA intron (NM_001282599, intron 2 of 11) MIR|SINE|MIR 98435 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 346-54 chr10 113306009 113306231 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 176849 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 280-431 chr8 139397073 139397300 + 2 NA Intergenic LTR34|LTR|ERV1 305937 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 447-223 chr5 164850276 164850602 + 2 NA Intergenic L1ME1|LINE|L1 380160 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 465-54 chr11 83394036 83394437 + 2 NA Intergenic Intergenic -107829 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 183-7 chr1 224869193 224869330 + 2 NA Intergenic Intergenic -60393 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 379-91 chr14 55797326 55797672 + 2 NA promoter-TSS (NR_026797) promoter-TSS (NR_026797) -825 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 353-60 chr10 57727746 57728023 + 2 NA Intergenic Intergenic -423325 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 282-119 chr13 99258422 99258646 + 2 NA promoter-TSS (NM_005292) promoter-TSS (NM_005292) -106 NM_001098200 2841 Hs.741589 NM_005292 ENSG00000125245 GPR18 - G protein-coupled receptor 18 protein-coding 219-243 chr3 147832341 147832489 + 2 NA Intergenic HAL1M8|LINE|L1 -245744 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 407-23 chr1 244417056 244417451 + 2 NA intron (NM_001365073, intron 10 of 12) MIR|SINE|MIR 34656 NM_001126 159 Hs.498313 NM_001126 ENSG00000035687 ADSS ADEH|ADSS 2|ADSS2 adenylosuccinate synthase protein-coding 260-375 chr6 61832449 61832604 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 258396 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 395-106 chr15 51102393 51102721 + 2 NA intron (NM_207381, intron 1 of 2) intron (NM_207381, intron 1 of 2) 2719 NM_207381 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 228-230 chr3 185242490 185242642 + 2 NA intron (NM_001966, intron 2 of 6) L1PB1|LINE|L1 10706 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 687-116 chr8 42612834 42613337 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -71131 NM_006749 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 227-9 chr1 68932949 68933157 + 2 NA Intergenic Intergenic -122845 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 389-226 chr3 64916408 64916664 + 2 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -228536 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 409-113 chr17 71908481 71908793 + 2 NA Intergenic AluJo|SINE|Alu 117342 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 274-295 chr4 156741905 156742126 + 2 NA Intergenic Intergenic 229784 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 440-154 chr3 3716858 3717180 + 2 NA intron (NR_149025, intron 5 of 5) intron (NR_149025, intron 5 of 5) -82412 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 376-382 chr7 77809928 77810148 + 2 NA intron (NM_001366088, intron 1 of 11) intron (NM_001366088, intron 1 of 11) 11067 NM_001366086 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 396-67 chr11 5005450 5005764 + 2 NA Intergenic L1M5|LINE|L1 6624 NM_001004755 119682 Hs.553559 NM_001004755 ENSG00000176798 OR51L1 OR11-31 olfactory receptor family 51 subfamily L member 1 protein-coding 242-47 chr10 115209350 115209544 + 2 NA intron (NM_207303, intron 8 of 28) L1MEc|LINE|L1 116082 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 415-295 chr8 131902426 131902688 + 2 NA Intergenic Intergenic -1536 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 241-409 chr8 132206087 132206289 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -100923 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 246-368 chr7 44361112 44361288 + 2 NA Intergenic L1PA14|LINE|L1 -35569 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 282-450 chr8 82733635 82733808 + 2 NA Intergenic Intergenic -178383 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 351-264 chr20 41756592 41756910 + 2 NA Intergenic L1PA11|LINE|L1 -138374 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 354-350 chr4 175313879 175314192 + 2 NA Intergenic Intergenic 395677 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 381-156 chr18 71257173 71257509 + 2 NA Intergenic Intergenic 321615 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 158-93 chr5 56346040 56346131 + 2 NA Intergenic LTR29|LTR|ERV1 -112755 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 256-98 chr13 22248410 22248597 + 2 NA intron (NR_103810, intron 1 of 1) intron (NR_103810, intron 1 of 1) 38218 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 417-279 chr8 77087552 77087925 + 2 NA Intergenic Intergenic -86694 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 260-254 chr22 34969351 34969519 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 28481 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 442-13 chr1 113788001 113788406 + 2 NA intron (NM_018364, intron 2 of 6) L1MEi|LINE|L1 24273 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 164-55 chr2 83166661 83166798 + 2 NA Intergenic Intergenic 309926 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 331-198 chr16 85932092 85932371 + 2 NA Intergenic Intergenic 13884 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 302-69 chr11 21781251 21781464 + 2 NA Intergenic Intergenic -411728 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 506-272 chr7 92941735 92942103 + 2 NA Intergenic CR1-3_Croc|LINE|CR1 -105292 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 250-315 chr4 87869741 87869901 + 2 NA Intergenic Intergenic 35118 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 443-171 chr2 234773466 234773791 + 2 NA Intergenic Intergenic 90960 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 486-219 chr4 32453294 32453620 + 2 NA Intergenic Intergenic 102419 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 525-51 chr12 14330448 14330821 + 2 NA Intergenic AluY|SINE|Alu -34998 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 379-301 chr6 129065505 129065721 + 2 NA intron (NM_000426, intron 3 of 64) L1M2|LINE|L1 182472 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 261-261 chr3 160489792 160489994 + 2 NA Intergenic L1ME1|LINE|L1 -4146 NR_148403 100174949 NR_148401 ENSG00000248710 TRIM59-IFT80 IFT80-L TRIM59-IFT80 protein ncRNA 257-388 chr7 67672776 67672998 + 2 NA Intergenic Intergenic 336911 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 359-409 chr5 127256951 127257300 + 2 NA Intergenic LTR48|LTR|ERV1 -33639 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 551-160 chr5 91721572 91721934 + 2 NA Intergenic HAL1|LINE|L1 -338436 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 326-524 chr8 68156583 68156828 + 2 NA intron (NM_024870, intron 34 of 39) MER34C_|LTR|ERV1 -173668 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 255-48 chr11 11204114 11204340 + 2 NA Intergenic L1M7|LINE|L1 149023 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 271-299 chr4 33534032 33534263 + 2 NA Intergenic Intergenic 505746 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 278-434 chr8 127167573 127167737 + 2 NA Intergenic L1MC1|LINE|L1 29972 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 248-70 chr11 97899508 97899690 + 2 NA Intergenic Intergenic -1121350 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 572-123 chr4 55068313 55068756 + 2 NA Intergenic Intergenic 57061 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 376-118 chr15 56289383 56289625 + 2 NA Intergenic L1M2|LINE|L1 -44422 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 413-332 chrX 43600228 43600507 + 2 NA Intergenic Intergenic -54540 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 232-283 chr4 164711976 164712172 + 2 NA Intergenic Intergenic -42057 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 340-413 chr4 105543971 105544206 + 2 NA Intergenic Intergenic -8532 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 355-328 chr3 89547847 89548128 + 2 NA Intergenic Intergenic 440366 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 132-80 chr7 77481841 77481944 + 2 NA Intergenic Intergenic -55403 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 423-71 chr13 109327789 109328057 + 2 NA Intergenic Intergenic -72773 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 321-397 chr3 181979181 181979483 + 2 NA intron (NR_104146, intron 5 of 7) L3|LINE|CR1 26968 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 147-81 chr8 48482226 48482363 + 2 NA Intergenic L1MB7|LINE|L1 -69273 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 590-34 chr12 60366645 60367205 + 2 NA Intergenic L1MCa|LINE|L1 677555 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 199-216 chr6 117977296 117977412 + 2 NA intron (NM_001029858, intron 1 of 7) L1ME4a|LINE|L1 70090 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 216-138 chr17 80806535 80806728 + 2 NA promoter-TSS (NR_110852) promoter-TSS (NR_110852) -999 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 290-81 chr11 74602614 74602878 + 2 NA intron (NR_046409, intron 2 of 10) L2a|LINE|L2 10164 NR_046410 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 276-266 chr20 55226727 55226954 + 2 NA Intergenic L1M4a1|LINE|L1 -196203 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 327-246 chr2 33581764 33582076 + 2 NA Intergenic Intergenic -12490 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 168-80 chr4 33126865 33126960 + 2 NA Intergenic Intergenic 775874 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 349-105 chr11 100402039 100402234 + 2 NA Intergenic Intergenic -285152 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 517-6 chr1 67844327 67844707 + 2 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) -11050 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 205-231 chr5 149084542 149084683 + 2 NA intron (NR_122044, intron 2 of 2) intron (NR_122044, intron 2 of 2) 21295 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 468-296 chr7 46832754 46833194 + 2 NA Intergenic L1MC3|LINE|L1 -135852 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 414-270 chr5 82954813 82955083 + 2 NA Intergenic Intergenic -95112 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 313-251 chr2 53236805 53237100 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -530831 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 337-248 chr2 50900103 50900426 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 131868 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 178-98 chr4 66676712 66676833 + 2 NA Intergenic L1M5|LINE|L1 399948 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 344-37 chr1 228200120 228200445 + 2 NA Intergenic L1M4b|LINE|L1 -7762 NM_052843 84033 Hs.650039 NM_052843 ENSG00000154358 OBSCN ARHGEF30|UNC89 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF protein-coding 167-116 chr9 115584873 115585025 + 2 NA Intergenic L1MEd|LINE|L1 159290 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 235-211 chr21 29340295 29340473 + 2 NA intron (NR_027655, intron 4 of 7) intron (NR_027655, intron 4 of 7) -32117 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 499-91 chr17 69703210 69703630 + 2 NA intron (NR_109972, intron 3 of 4) AluSq2|SINE|Alu 109433 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 535-162 chr3 39723776 39724237 + 2 NA Intergenic Intergenic -84908 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 253-93 chr12 13527145 13527295 + 2 NA Intergenic MIR|SINE|MIR -150475 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 328-525 chr7 25938581 25938789 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 11301 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 196-151 chr20 41773761 41773891 + 2 NA Intergenic L1PA13|LINE|L1 -155449 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 339-570 chr8 81158253 81158452 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -46284 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 432-107 chr18 5035451 5035742 + 2 NA Intergenic L1MB5|LINE|L1 -45586 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 174-17 chr10 85690949 85691065 + 2 NA intron (NM_017551, intron 12 of 15) MIRb|SINE|MIR 113276 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 342-385 chr5 22259727 22259944 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -45985 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 266-244 chr3 44685840 44686034 + 2 NA promoter-TSS (NR_157564) promoter-TSS (NR_157564) -284 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 349-345 chr3 150677867 150678064 + 2 NA intron (NM_001308234, intron 10 of 13) MER3|DNA|hAT-Charlie -25599 NR_121675 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 379-218 chr3 99294508 99294771 + 2 NA Intergenic L1MCa|LINE|L1 -343955 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 741-30 chr2 49132066 49132632 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 22166 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 273-272 chr21 34899197 34899407 + 2 NA intron (NM_001754, intron 2 of 8) MLT1A|LTR|ERVL-MaLR -10603 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 532-194 chr4 178086738 178087128 + 2 NA Intergenic Intergenic -178997 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 219-36 chr10 109006946 109007095 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 916226 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 324-253 chr2 43670500 43670796 + 2 NA intron (NM_172069, intron 2 of 29) L1M5|LINE|L1 5781 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 207-85 chr14 80193400 80193548 + 2 NA Intergenic L1MC1|LINE|L1 -17945 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 554-69 chr14 32626987 32627379 + 2 NA intron (NM_004274, intron 7 of 13) L3b|LINE|CR1 297885 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 260-404 chr7 34772015 34772216 + 2 NA intron (NR_015356, intron 1 of 4) intron (NR_015356, intron 1 of 4) -13843 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 211-162 chr20 19492524 19492691 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -208011 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 165-128 chr8 49065564 49065669 + 2 NA intron (NM_001256596, intron 1 of 4) intron (NM_001256596, intron 1 of 4) -6728 NM_001256598 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 399-282 chr7 56435736 56436017 + 2 NA intron (NR_029420, intron 1 of 5) L1MA3|LINE|L1 12499 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 354-11 chr1 71698255 71698532 + 2 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 138619 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 283-429 chr8 20949909 20950121 + 2 NA Intergenic Intergenic -3618 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 171-72 chr21 30798142 30798236 + 2 NA Intergenic L1ME1|LINE|L1 15085 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 279-160 chr2 6731813 6732008 + 2 NA non-coding (NR_038369, exon 4 of 6) non-coding (NR_038369, exon 4 of 6) 38401 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 307-461 chr7 103685500 103685668 + 2 NA intron (NM_005045, intron 10 of 64) intron (NM_005045, intron 10 of 64) -239377 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 319-569 chr9 21877116 21877344 + 2 NA Intergenic L1PREC2|LINE|L1 74594 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 401-207 chr3 75216098 75216365 + 2 NA Intergenic Intergenic 1755 NR_049831 100846999 NR_049831 ENSG00000266780 MIR4444-2 - microRNA 4444-2 ncRNA 444-48 chr12 27960517 27960867 + 2 NA intron (NM_198965, intron 5 of 5) AluSx1|SINE|Alu 9284 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 151-78 chr7 36439116 36439210 + 2 NA intron (NM_001284302, intron 19 of 22) intron (NM_001284302, intron 19 of 22) -48806 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 281-144 chr16 13726591 13726783 + 2 NA Intergenic Intergenic -193470 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 365-83 chr11 125843752 125844045 + 2 NA Intergenic L1M1|LINE|L1 10582 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 276-18 chr1 158460701 158460890 + 2 NA Intergenic L1M2|LINE|L1 -4767 NM_001004473 391109 Hs.690410 NM_001004473 ENSG00000173285 OR10K1 OR1-6 olfactory receptor family 10 subfamily K member 1 protein-coding 221-97 chr16 6965802 6966014 + 2 NA intron (NM_001142334, intron 1 of 13) MIR|SINE|MIR 192099 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 521-11 chr1 117745978 117746434 + 2 NA Intergenic L1PB1|LINE|L1 140158 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 261-4 chr1 40227392 40227583 + 2 NA intron (NM_012421, intron 6 of 7) intron (NM_012421, intron 6 of 7) -20450 NM_001008740 127391 Hs.406265 NM_001008740 ENSG00000188800 TMCO2 dJ39G22.2 transmembrane and coiled-coil domains 2 protein-coding 367-10 chr1 47924707 47924901 + 2 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 72581 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 180-61 chr16 65887077 65887248 + 2 NA Intergenic Intergenic -310862 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 297-194 chr19 52102356 52102533 + 2 NA Intergenic AluSx3|SINE|Alu -6679 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 478-216 chr4 120577752 120578030 + 2 NA Intergenic Intergenic 344975 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 301-34 chr10 16365504 16365698 + 2 NA Intergenic AluJo|SINE|Alu -71342 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 215-255 chr5 64004549 64004715 + 2 NA Intergenic Intergenic -42340 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 339-6 chr1 38383089 38383347 + 2 NA Intergenic Intergenic -91978 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 346-193 chr17 54813670 54813910 + 2 NA Intergenic L1MEf|LINE|L1 -86901 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 227-313 chr6 96369462 96369645 + 2 NA Intergenic Intergenic -152253 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 473-97 chr15 79865299 79865622 + 2 NA intron (NR_037654, intron 2 of 2) intron (NR_037654, intron 2 of 2) 31537 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 722-28 chr14 50851368 50852033 + 2 NA Intergenic Intergenic -20353 NM_001206673 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 383-152 chr17 17436672 17436994 + 2 NA Intergenic Intergenic -40167 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 183-71 chr2 34811772 34811920 + 2 NA Intergenic Intergenic 134289 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 314-203 chr16 12736500 12736725 + 2 NA intron (NM_018340, intron 2 of 3) LTR84b|LTR|ERVL 16291 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 178-105 chr4 187206645 187206790 + 2 NA intron (NR_147159, intron 1 of 2) LTR40a|LTR|ERVL 4731 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 323-515 chr7 105713163 105713335 + 2 NA intron (NM_020725, intron 3 of 11) MSTA|LTR|ERVL-MaLR -34087 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 199-79 chr17 28814325 28814492 + 2 NA intron (NM_001288635, intron 1 of 3) intron (NM_001288635, intron 1 of 3) -1937 NM_001288634 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 259-170 chr18 67800129 67800322 + 2 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 14597 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 610-40 chr12 127832679 127833070 + 2 NA Intergenic Intergenic -48743 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 201-133 chr2 230352996 230353139 + 2 NA intron (NM_001352892, intron 2 of 18) L1M6|LINE|L1 25896 NM_001352894 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 158-72 chr3 31483749 31483899 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -49101 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 231-294 chr5 107865474 107865682 + 2 NA intron (NM_001163315, intron 8 of 8) intron (NM_001163315, intron 8 of 8) -194641 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 329-127 chr12 78961896 78962101 + 2 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) -83694 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 248-27 chr10 10197431 10197663 + 2 NA Intergenic Intergenic 138825 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 360-363 chr5 45208915 45209171 + 2 NA Intergenic Intergenic 400096 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 235-161 chr2 30049759 30049990 + 2 NA Intergenic MER57C2|LTR|ERV1 -97133 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 314-50 chr1 239754602 239754892 + 2 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -35628 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 326-218 chr19 16297648 16297927 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -27039 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 204-33 chr10 122916724 122916884 + 2 NA Intergenic Intergenic 6194 NM_001029888 118670 Hs.369829 NM_001029888 ENSG00000203795 FAM24A - family with sequence similarity 24 member A protein-coding 333-557 chr8 34119094 34119292 + 2 NA Intergenic LTR16D|LTR|ERVL -519087 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 349-245 chr2 31299287 31299578 + 2 NA Intergenic Intergenic 65280 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 426-27 chr10 60631569 60631888 + 2 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) -58772 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 347-476 chr7 79516788 79517022 + 2 NA Intergenic L2|LINE|L2 62945 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 312 chr1 4393914 4394181 + 2 NA Intergenic L1MC1|LINE|L1 -18004 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 214-205 chr3 68375560 68375719 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -124998 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 410-259 chr6 46016873 46017255 + 2 NA intron (NM_001370649, intron 1 of 5) L1ME3|LINE|L1 -1175 NM_001256023 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 582-85 chr20 747041 747549 + 2 NA Intergenic AluSx1|SINE|Alu 21205 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 328-41 chr1 237573335 237573564 + 2 NA intron (NM_001035, intron 29 of 104) intron (NM_001035, intron 29 of 104) 102330 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 271-94 chr12 34659182 34659445 + 2 NA Intergenic ALR/Alpha|Satellite|centr 636817 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 279-7 chr1 58336758 58336953 + 2 NA Intergenic MIRb|SINE|MIR -86308 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 241-147 chr17 73084476 73084684 + 2 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 8108 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 274-54 chr10 100135242 100135384 + 2 NA Intergenic Intergenic 50716 NM_001347861 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 371-159 chr2 19527578 19527877 + 2 NA Intergenic Intergenic -169104 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 367-199 chr2 74957962 74958229 + 2 NA promoter-TSS (NM_019896) promoter-TSS (NM_019896) -548 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 148-27 chr14 70662464 70662591 + 2 NA intron (NM_015351, intron 1 of 2) intron (NM_015351, intron 1 of 2) 20611 NM_015351 23508 Hs.79170 NM_015351 ENSG00000133985 TTC9 TTC9A tetratricopeptide repeat domain 9 protein-coding 304-400 chr4 189318343 189318563 + 2 NA Intergenic L1MA3|LINE|L1 -341153 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 639-105 chr6 153711043 153711649 + 2 NA Intergenic Intergenic -299150 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 157-106 chr5 136366385 136366534 + 2 NA promoter-TSS (NM_001167576) promoter-TSS (NM_001167576) -983 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 384-166 chr2 56215077 56215357 + 2 NA intron (NM_001348516, intron 2 of 2) L1MC|LINE|L1 -29447 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 425-59 chr11 85455731 85456042 + 2 NA intron (NM_001142699, intron 3 of 27) L1PA15|LINE|L1 171384 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 600-2 chr1 23874045 23874535 + 2 NA 3' UTR (NM_001841, exon 2 of 2) 3' UTR (NM_001841, exon 2 of 2) -5921 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 498-12 chr1 190854359 190854753 + 2 NA Intergenic L1PA16|LINE|L1 229666 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 178-6 chr1 89998934 89999088 + 2 NA intron (NM_001320185, intron 2 of 11) intron (NM_001320185, intron 2 of 11) 3901 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 132-68 chr6 64262308 64262395 + 2 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 455515 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 275-257 chr4 5601472 5601639 + 2 NA intron (NM_147127, intron 16 of 21) HAL1|LINE|L1 76399 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 315-29 chr1 185798748 185798946 + 2 NA intron (NM_031935, intron 1 of 106) L1PA15-16|LINE|L1 64456 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 263-451 chr9 86865844 86866098 + 2 NA Intergenic Intergenic 81535 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 320-186 chr16 35681669 35681931 + 2 NA Intergenic ALR/Alpha|Satellite|centr -64752 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 200-187 chr4 59313782 59313944 + 2 NA Intergenic Intergenic 300290 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 170-39 chr12 115325106 115325213 + 2 NA Intergenic Intergenic -640984 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 238-341 chr6 153161057 153161256 + 2 NA Intergenic Intergenic -29874 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 207-240 chr5 43660989 43661171 + 2 NA intron (NM_012343, intron 17 of 21) intron (NM_012343, intron 17 of 21) -57850 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 334-90 chr11 79205640 79205843 + 2 NA intron (NM_001098816, intron 3 of 33) L1MD2|LINE|L1 196368 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 311-264 chr2 108080013 108080265 + 2 NA Intergenic L2|LINE|L2 -27384 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 337-21 chr1 114327175 114327444 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -173440 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 326-331 chr3 61598990 61599169 + 2 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 37508 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 636-30 chr12 42686270 42686803 + 2 NA intron (NR_135027, intron 4 of 4) MLT1G-int|LTR|ERVL-MaLR -5680 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 282-312 chr3 160995134 160995350 + 2 NA intron (NM_001317912, intron 3 of 4) L2a|LINE|L2 109490 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 345-275 chr2 116650078 116650362 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -1164471 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 331-379 chr4 58347200 58347514 + 2 NA Intergenic LTR41C|LTR|ERVL 188971 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 294-319 chr4 18644020 18644266 + 2 NA Intergenic Intergenic -622268 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 204-195 chr3 58692507 58692653 + 2 NA Intergenic MER4B-int|LTR|ERV1 -25806 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 479-136 chr3 55780129 55780390 + 2 NA intron (NR_132749, intron 13 of 17) L1MC|LINE|L1 72335 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 238-67 chr11 34665467 34665618 + 2 NA Intergenic Intergenic 32976 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 211-297 chr8 71425512 71425681 + 2 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -63527 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 405-298 chr7 37504831 37505229 + 2 NA Intergenic L1M6|LINE|L1 -55704 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 789-35 chr4 33411381 33412013 + 2 NA Intergenic MER4B-int|LTR|ERV1 628196 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 421-262 chr6 114253422 114253789 + 2 NA intron (NR_125845, intron 9 of 9) intron (NR_125845, intron 9 of 9) -190728 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 536-17 chr1 172197965 172198367 + 2 NA intron (NR_146559, intron 15 of 20) L1PA14|LINE|L1 -53331 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 332-178 chr16 12602948 12603140 + 2 NA Intergenic Intergenic -117277 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 317-396 chr5 125831125 125831396 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie 337999 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 335-285 chr2 237276316 237276516 + 2 NA Intergenic L1PREC2|LINE|L1 137748 NM_057166 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 308-162 chr15 81728702 81728971 + 2 NA Intergenic Intergenic 317182 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 437-167 chr3 14233974 14234265 + 2 NA Intergenic Charlie26a|DNA|hAT-Charlie 55302 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 824-45 chr7 54386889 54387569 + 2 NA Intergenic Intergenic 56532 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 299-251 chr20 14438996 14439237 + 2 NA intron (NM_001351663, intron 3 of 17) L1MA9|LINE|L1 -101449 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 325-125 chr12 39011709 39011952 + 2 NA Intergenic Intergenic -106239 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 170-17 chr10 12690127 12690287 + 2 NA intron (NM_001351032, intron 5 of 11) MIR|SINE|MIR 35146 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 365-327 chr5 107094092 107094379 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -83221 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 352-441 chr5 180944820 180945083 + 2 NA intron (NM_001159710, intron 2 of 6) L1MA7|LINE|L1 35387 NM_001159710 79908 Hs.189109 NM_024850 ENSG00000113303 BTNL8 BTN9.2 butyrophilin like 8 protein-coding 332-393 chr4 173591069 173591347 + 2 NA TTS (NR_136196) TTS (NR_136196) 60750 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 305-432 chr5 42410454 42410621 + 2 NA Intergenic MIRb|SINE|MIR -12902 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 412-231 chr4 46623915 46624260 + 2 NA Intergenic L1M1|LINE|L1 -233959 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 288-194 chr2 73019826 73020065 + 2 NA intron (NR_138476, intron 6 of 14) intron (NR_138476, intron 6 of 14) 39227 NM_001330406 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 231-147 chr19 31240274 31240499 + 2 NA intron (NR_138036, intron 1 of 4) Charlie1b|DNA|hAT-Charlie 72876 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 323-96 chr11 110096452 110096740 + 2 NA intron (NM_033390, intron 1 of 5) MIR|SINE|MIR 3204 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 738-7 chr10 86734213 86734766 + 2 NA 3' UTR (NM_001171610, exon 14 of 14) 3' UTR (NM_001171610, exon 14 of 14) -22150 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 332-75 chr10 109169962 109170145 + 2 NA Intergenic Intergenic 753193 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 746-57 chr4 160144249 160144683 + 2 NA Intergenic L1ME3A|LINE|L1 -366682 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 176-134 chr7 157670343 157670506 + 2 NA intron (NM_130843, intron 12 of 21) intron (NM_130843, intron 12 of 21) -96002 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 644-94 chr7 30755307 30755669 + 2 NA exon (NM_001199219, exon 3 of 3) exon (NM_001199219, exon 3 of 3) 3353 NM_001199219 11185 Hs.632629 NM_006774 ENSG00000241644 INMT TEMT indolethylamine N-methyltransferase protein-coding 344-79 chr11 78754337 78754642 + 2 NA intron (NM_001098816, intron 19 of 33) intron (NM_001098816, intron 19 of 33) -179625 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 242-265 chr4 77458218 77458392 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -53448 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 225-236 chr4 38418203 38418390 + 2 NA Intergenic MER112|DNA|hAT-Charlie 51382 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 207-184 chr3 28357757 28357892 + 2 NA intron (NM_001324170, intron 1 of 6) MLT2B1|LTR|ERVL 8675 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 426-133 chr2 52020731 52021121 + 2 NA intron (NR_135237, intron 7 of 10) MER58A|DNA|hAT-Charlie -349722 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 418-64 chr14 25257846 25258084 + 2 NA Intergenic HAL1|LINE|L1 -207668 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 303-318 chr4 76821271 76821558 + 2 NA Intergenic Intergenic 76730 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 341-133 chr13 53737109 53737314 + 2 NA Intergenic Intergenic -78208 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 296-77 chr11 81251239 81251436 + 2 NA Intergenic Intergenic -488534 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 543-26 chr10 16238864 16239336 + 2 NA Intergenic L1MEc|LINE|L1 -197843 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 454-76 chr12 97842594 97842869 + 2 NA Intergenic L1M7|LINE|L1 -86214 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 244-24 chr1 240996700 240996933 + 2 NA intron (NM_001350116, intron 3 of 16) L1MDa|LINE|L1 -135456 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 597-23 chr10 81488328 81488896 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -386582 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 319-198 chr18 10029665 10029851 + 2 NA Intergenic Intergenic 115742 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 321-346 chr21 27522087 27522271 + 2 NA Intergenic L1PA6|LINE|L1 -200200 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 444-101 chr18 13198426 13198725 + 2 NA Intergenic AluSz|SINE|Alu -20185 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 526-47 chr11 85461082 85461543 + 2 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 165958 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 236-216 chr3 35273945 35274165 + 2 NA intron (NR_110817, intron 2 of 3) MLT1A1|LTR|ERVL-MaLR 119968 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 323-231 chr2 25411606 25411829 + 2 NA intron (NM_001351385, intron 14 of 17) intron (NM_001351385, intron 14 of 17) -69127 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 254-235 chr3 4079502 4079694 + 2 NA Intergenic MIR|SINE|MIR -223706 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 572-57 chr14 94431374 94431818 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 21204 NM_001080451 256394 Hs.145890 NM_001080451 ENSG00000186910 SERPINA11 - serpin family A member 11 protein-coding 489-37 chr10 112799601 112799955 + 2 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) -23718 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 612-70 chr2 141666646 141667076 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 464840 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 195-197 chr5 84741976 84742147 + 2 NA Intergenic Intergenic -357181 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 341-64 chr10 72071963 72072204 + 2 NA intron (NM_014767, intron 5 of 11) intron (NM_014767, intron 5 of 11) 16468 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 212-307 chr7 80459435 80459566 + 2 NA intron (NM_001102386, intron 7 of 7) intron (NM_001102386, intron 7 of 7) 52564 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 139-49 chr20 36856711 36856810 + 2 NA intron (NM_080627, intron 1 of 14) intron (NM_080627, intron 1 of 14) 3113 NM_199181 140710 Hs.460807 NM_080627 ENSG00000149639 SOGA1 C20orf117|KIAA0889|SOGA suppressor of glucose, autophagy associated 1 protein-coding 178-110 chr5 38946781 38946901 + 2 NA intron (NM_001285439, intron 33 of 38) intron (NM_001285439, intron 33 of 38) 100829 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 268-32 chr10 20884787 20884950 + 2 NA intron (NM_006393, intron 4 of 27) L3|LINE|CR1 12734 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 135-18 chr14 60763637 60763723 + 2 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 28919 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 439-2 chr1 36845258 36845601 + 2 NA intron (NM_000831, intron 9 of 15) intron (NM_000831, intron 9 of 15) 189086 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 401-123 chr17 20158395 20158656 + 2 NA intron (NM_001033554, intron 1 of 5) ERV3-16A3_LTR|LTR|ERVL 2453 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 330-300 chr2 168446453 168446647 + 2 NA Intergenic Intergenic -9722 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 357-151 chr17 33144288 33144521 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 148584 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 486-233 chr4 162721886 162722219 + 2 NA Intergenic L1ME3A|LINE|L1 371576 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 597-29 chr10 107661656 107662108 + 2 NA Intergenic HERVL-int|LTR|ERVL 407411 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 240-383 chr6 107759527 107759714 + 2 NA intron (NM_001286408, intron 1 of 6) intron (NM_001286408, intron 1 of 6) -27470 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 295-159 chr15 97514290 97514485 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 7424 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 144-100 chr8 86382996 86383102 + 2 NA intron (NM_007013, intron 5 of 24) (TAGTAAT)n|Simple_repeat|Simple_repeat 40502 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 326-4 chr1 25958164 25958480 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger 39741 NM_000437 5051 Hs.477083 NM_000437 ENSG00000158006 PAFAH2 HSD-PLA2 platelet activating factor acetylhydrolase 2 protein-coding 240-302 chr3 181667233 181667392 + 2 NA intron (NR_075090, intron 2 of 2) MER101|LTR|ERV1 -44613 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 374-55 chr11 97082629 97082850 + 2 NA Intergenic AluY|SINE|Alu 574314 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 277-286 chr4 59492628 59492798 + 2 NA Intergenic Intergenic 479140 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 210-5 chr1 73035532 73035714 + 2 NA Intergenic Intergenic -270547 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 171-75 chr22 43709398 43709515 + 2 NA intron (NM_198856, intron 8 of 29) intron (NM_198856, intron 8 of 29) 102849 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 469-77 chr13 95668740 95669157 + 2 NA Intergenic L1M1|LINE|L1 7977 NR_132117 100289274 Hs.594844 NR_132117 ENSG00000247400 DNAJC3-DT DNAJC3-AS1 DNAJC3 divergent transcript ncRNA 255-191 chr2 50136492 50136703 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -162394 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 730-87 chr9 89294441 89295010 + 2 NA Intergenic L1M5|LINE|L1 -16470 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 297-123 chr13 101941129 101941326 + 2 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -24582 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 226-41 chr10 55452795 55453015 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -146137 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 356-438 chr6 147647852 147648102 + 2 NA Intergenic MIRb|SINE|MIR 139287 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 265-318 chr5 123660186 123660434 + 2 NA Intergenic Intergenic 114893 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 358-311 chr3 145001453 145001754 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 1028522 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 750-60 chr5 133592479 133592923 + 2 NA intron (NM_015082, intron 2 of 15) MSTB1|LTR|ERVL-MaLR 19840 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 423-184 chr3 162781518 162781860 + 2 NA Intergenic L1MB3|LINE|L1 521612 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 292-30 chr1 188696641 188696867 + 2 NA Intergenic L1MA4A|LINE|L1 1253126 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 277-372 chr7 37993296 37993455 + 2 NA Intergenic Intergenic 72056 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 719-53 chr3 160899239 160899803 + 2 NA intron (NR_134243, intron 2 of 5) intron (NR_134243, intron 2 of 5) 28923 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 314-54 chr10 9752650 9752877 + 2 NA Intergenic L1ME2z|LINE|L1 -305959 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 300-91 chr12 105545364 105545546 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -158748 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 207-245 chr5 112117509 112117706 + 2 NA Intergenic Intergenic -42919 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 223-265 chr5 9015010 9015199 + 2 NA Intergenic Intergenic 38791 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 464-47 chr13 34359770 34360045 + 2 NA intron (NR_146542, intron 1 of 3) LTR40a|LTR|ERVL 11864 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 252-242 chr22 24942270 24942509 + 2 NA intron (NM_001001663, intron 1 of 3) MIR3|SINE|MIR 4306 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 475-23 chr10 45541840 45542156 + 2 NA intron (NM_145021, intron 1 of 6) intron (NM_145021, intron 1 of 6) -6627 NM_001282866 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 375-420 chr8 127611584 127611901 + 2 NA Intergenic Intergenic 122225 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 536-252 chr9 103537103 103537505 + 2 NA Intergenic L1PA15|LINE|L1 -212271 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 687-38 chr15 45415523 45416011 + 2 NA non-coding (NR_027635, exon 5 of 8) non-coding (NR_027635, exon 5 of 8) 13431 NR_027635 79029 Hs.369657 NM_024063 ENSG00000171763 SPATA5L1 - spermatogenesis associated 5 like 1 protein-coding 486-259 chr6 79997533 79997965 + 2 NA Intergenic MER75|DNA|PiggyBac -6856 NM_001166691 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 288-166 chr19 12107018 12107271 + 2 NA intron (NM_001348163, intron 2 of 3) intron (NM_001348163, intron 2 of 3) 14847 NM_001348165 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 432-305 chrX 82770407 82770747 + 2 NA Intergenic L1PB1|LINE|L1 -737713 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 239-27 chr10 26068291 26068426 + 2 NA intron (NM_017433, intron 11 of 34) intron (NM_017433, intron 11 of 34) 134129 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 304-200 chr17 71912889 71913088 + 2 NA Intergenic Intergenic 112991 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 195-26 chr10 66266826 66266963 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) -659142 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 281-439 chr8 112098591 112098809 + 2 NA Intergenic Intergenic -544793 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 217-147 chr17 14646542 14646690 + 2 NA Intergenic L1MEf|LINE|L1 342876 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 236-16 chr1 112168634 112168845 + 2 NA Intergenic Intergenic 178203 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 268-99 chr12 130909063 130909263 + 2 NA Intergenic L1MEc|LINE|L1 37097 NM_006325 5901 Hs.10842 NM_006325 ENSG00000132341 RAN ARA24|Gsp1|TC4 RAN, member RAS oncogene family protein-coding 502-264 chr8 82538545 82538878 + 2 NA Intergenic Intergenic -373393 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 471-76 chr13 105157229 105157554 + 2 NA Intergenic Intergenic -308476 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 200-213 chr5 44689260 44689434 + 2 NA Intergenic Intergenic 119446 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 428-220 chr4 103993759 103994072 + 2 NA Intergenic Intergenic -273930 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 370-370 chr5 64068236 64068527 + 2 NA Intergenic AluSx3|SINE|Alu -97462 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 614-150 chrX 89190612 89191177 + 2 NA Intergenic MER34A1|LTR|ERV1 443669 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 293-3 chr1 49115286 49115556 + 2 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -141990 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 350-217 chr2 50687037 50687352 + 2 NA intron (NM_001330093, intron 4 of 22) Tigger15a|DNA|TcMar-Tigger 9068 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 287-217 chr2 212834305 212834560 + 2 NA Intergenic L1MC1|LINE|L1 39101 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 442-148 chr2 175873485 175873887 + 2 NA Intergenic Intergenic 128581 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 378-124 chr13 104062019 104062344 + 2 NA Intergenic Intergenic 636981 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 880-8 chr12 4670720 4671548 + 2 NA intron (NM_005002, intron 8 of 10) intron (NM_005002, intron 8 of 10) 22020 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 345-519 chr8 64313735 64313944 + 2 NA intron (NR_125826, intron 1 of 4) L1MEc|LINE|L1 54719 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 373-137 chr15 99595095 99595436 + 2 NA intron (NM_001352616, intron 1 of 10) intron (NM_001352616, intron 1 of 10) 28782 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 136-28 chr15 69153852 69153952 + 2 NA Intergenic L2c|LINE|L2 -6695 NM_001324091 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 181-100 chr4 30289694 30289841 + 2 NA Intergenic Intergenic -430602 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 334-463 chr6 68125552 68125818 + 2 NA Intergenic LTR82B|LTR|ERVL 70334 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 568-159 chr5 33500320 33500802 + 2 NA Intergenic Intergenic 59785 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 177-116 chr4 51884671 51884798 + 2 NA intron (NM_001040402, intron 5 of 10) intron (NM_001040402, intron 5 of 10) 41155 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 327-275 chr2 155358187 155358471 + 2 NA Intergenic L1M4c|LINE|L1 659634 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 279-335 chr5 106161916 106162117 + 2 NA Intergenic Intergenic 848998 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 310-121 chr13 109849467 109849771 + 2 NA Intergenic L1ME4b|LINE|L1 -63036 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 580-179 chr7 40678190 40678539 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 301575 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 164-104 chr7 33789878 33789980 + 2 NA Intergenic MIR|SINE|MIR -114986 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 192-29 chr10 108749310 108749486 + 2 NA Intergenic Intergenic -680105 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 672-10 chr10 55052395 55052863 + 2 NA intron (NM_001354404, intron 3 of 34) AluSz|SINE|Alu -251338 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 529-72 chr15 26952111 26952561 + 2 NA Intergenic Intergenic -18845 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 260-239 chr20 16057416 16057562 + 2 NA Intergenic Intergenic -71607 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 350-227 chr2 88421817 88421997 + 2 NA Intergenic AluSx|SINE|Alu 30786 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 427-289 chrX 87396562 87396861 + 2 NA Intergenic L2|LINE|L2 -121091 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 269-234 chr21 27655876 27656044 + 2 NA Intergenic Intergenic -66419 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 277-306 chr5 15243784 15243965 + 2 NA intron (NR_109944, intron 1 of 2) intron (NR_109944, intron 1 of 2) 22686 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 542-44 chr12 30691870 30692225 + 2 NA intron (NM_006390, intron 1 of 24) intron (NM_006390, intron 1 of 24) 3822 NM_006390 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 323-252 chr2 75452487 75452697 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -71476 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 191-60 chr15 61688538 61688721 + 2 NA Intergenic L1M3f|LINE|L1 -41289 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 332-376 chr4 57893011 57893217 + 2 NA Intergenic Intergenic 467242 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 334-83 chr11 37960378 37960597 + 2 NA Intergenic L2a|LINE|L2 21886 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 373-234 chr20 16977218 16977546 + 2 NA Intergenic MER21B|LTR|ERVL 229029 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 456-140 chr18 76021475 76021767 + 2 NA Intergenic L1MC|LINE|L1 -101377 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 321-122 chr12 13225044 13225334 + 2 NA Intergenic Intergenic 28463 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 602-94 chr4 61285150 61285557 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 83181 NM_001371342 366-18 chr1 107234711 107234937 + 2 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 86755 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 355-236 chr2 50060738 50060991 + 2 NA intron (NM_001330093, intron 19 of 22) THE1B|LTR|ERVL-MaLR -86661 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 591-48 chr16 66952916 66953407 + 2 NA Intergenic Intergenic -8105 NM_024922 23491 Hs.268700 NM_012122 ENSG00000172828 CES3 ES31 carboxylesterase 3 protein-coding 233-280 chr4 171358336 171358531 + 2 NA Intergenic AluJo|SINE|Alu 172249 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 202-24 chr10 7739451 7739604 + 2 NA intron (NM_002216, intron 16 of 20) intron (NM_002216, intron 16 of 20) 36211 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 302-4 chr1 41302325 41302610 + 2 NA Intergenic L2a|LINE|L2 -58967 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 359-325 chr3 84644769 84644985 + 2 NA intron (NR_033860, intron 19 of 20) intron (NR_033860, intron 19 of 20) 224698 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 275-23 chr1 204750033 204750235 + 2 NA Intergenic Intergenic -64396 NM_201630 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 306-272 chr20 3635945 3636195 + 2 NA intron (NM_139321, intron 26 of 28) intron (NM_139321, intron 26 of 28) 27329 NM_022139 64096 Hs.302025 NM_022139 ENSG00000125861 GFRA4 - GDNF family receptor alpha 4 protein-coding 317-413 chr6 63219770 63220030 + 2 NA Intergenic Intergenic 100077 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 300-393 chr6 85250656 85250926 + 2 NA Intergenic Intergenic 139395 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 531-142 chr21 27734132 27734455 + 2 NA intron (NR_024357, intron 1 of 3) MLT1B|LTR|ERVL-MaLR 11914 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 345-119 chr12 39141913 39142135 + 2 NA Intergenic Intergenic -236433 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 313-115 chr12 92709076 92709382 + 2 NA TTS (NM_001178097) TTS (NM_001178097) 6240 NM_001178097 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 432-89 chr16 30820129 30820372 + 2 NA Intergenic AluJr|SINE|Alu -33045 NM_001345970 23361 Hs.301094 NM_001080417 ENSG00000102870 ZNF629 ZNF|ZNF65 zinc finger protein 629 protein-coding 335-175 chr15 77141010 77141334 + 2 NA intron (NM_024776, intron 6 of 7) L1MB7|LINE|L1 -70063 NM_001168412 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 348-25 chr1 160803594 160803865 + 2 NA TTS (NM_001033667) TTS (NM_001033667) 7555 NM_001033667 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 295-481 chr8 119682245 119682407 + 2 NA Intergenic L2c|LINE|L2 -8936 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 713-63 chr4 45390550 45391027 + 2 NA Intergenic L1PA15|LINE|L1 -664154 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 203-99 chr19 30178426 30178576 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -193883 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 678-105 chr8 103999744 104000139 + 2 NA intron (NM_001348500, intron 15 of 20) intron (NM_001348500, intron 15 of 20) 180721 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 231-356 chr8 103592040 103592226 + 2 NA intron (NM_001348497, intron 1 of 22) LTR89|LTR|ERVL? -90223 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 392-212 chr3 140391055 140391347 + 2 NA intron (NM_022131, intron 2 of 16) L1PA10|LINE|L1 117588 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 854-10 chr11 81699495 81700190 + 2 NA Intergenic L1M2|LINE|L1 190994 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 234-223 chr22 27227929 27228058 + 2 NA Intergenic L1MC5a|LINE|L1 -3314 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 464-210 chr6 35149348 35149668 + 2 NA Intergenic MIR|SINE|MIR -8098 NM_001261818 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 335-110 chr11 116001287 116001585 + 2 NA Intergenic Intergenic -241236 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 376-62 chr10 121425126 121425493 + 2 NA Intergenic Intergenic 106005 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 277-121 chr14 81961238 81961481 + 2 NA Intergenic Intergenic -218221 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 266-181 chr2 84723683 84723939 + 2 NA intron (NM_001370, intron 60 of 76) intron (NM_001370, intron 60 of 76) 157273 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 184-57 chr14 75509390 75509514 + 2 NA Intergenic L1MB7|LINE|L1 -13017 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 204-47 chr11 106570384 106570532 + 2 NA Intergenic L1MEg|LINE|L1 319051 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 361-138 chr14 59809349 59809621 + 2 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 61291 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 239-92 chr13 98588656 98588876 + 2 NA Intergenic L1ME3C|LINE|L1 11511 NR_046542 100874069 Hs.594160 NR_046542 STK24-AS1 - STK24 antisense RNA 1 ncRNA 429-228 chr5 24843787 24844074 + 2 NA Intergenic LTR33A|LTR|ERVL -3347 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 302-407 chr7 26342485 26342709 + 2 NA intron (NM_001318199, intron 1 of 6) intron (NM_001318199, intron 1 of 6) -18287 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 161-121 chr8 78636549 78636690 + 2 NA Intergenic L1MC3|LINE|L1 -29470 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 133-14 chr11 110663972 110664045 + 2 NA intron (NM_020809, intron 3 of 15) L1M5|LINE|L1 47817 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 267-447 chr9 32254728 32254930 + 2 NA Intergenic L1ME1|LINE|L1 -129774 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 341-307 chr20 58116855 58117110 + 2 NA Intergenic L1MC3|LINE|L1 -33920 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 136-53 chr20 38520470 38520554 + 2 NA intron (NM_001282917, intron 9 of 29) intron (NM_001282917, intron 9 of 29) 3949 NR_039605 100616190 NR_039605 ENSG00000275453 MIR548O2 - microRNA 548o-2 ncRNA 286-48 chr10 88756482 88756650 + 2 NA Intergenic Intergenic -4840 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 586-2 chr1 30560932 30561437 + 2 NA Intergenic MER65A|LTR|ERV1 -157588 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 428-278 chr7 117992286 117992653 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -119028 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 734-60 chr5 63373839 63374370 + 2 NA Intergenic Intergenic 588188 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 265-171 chr2 16837637 16837804 + 2 NA Intergenic L1ME2|LINE|L1 -171886 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 269-194 chr2 57442891 57443076 + 2 NA Intergenic Intergenic -464668 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 655-37 chr14 57662893 57663297 + 2 NA intron (NM_001352014, intron 1 of 9) LTR33|LTR|ERVL -169238 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 302-500 chrX 96290085 96290289 + 2 NA Intergenic L1M5|LINE|L1 47715 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 166-60 chr2 227880999 227881119 + 2 NA intron (NM_001330004, intron 2 of 13) L2|LINE|L2 9428 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 305-232 chr19 56606021 56606212 + 2 NA intron (NR_163263, intron 2 of 4) MIR|SINE|MIR 10814 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 140-71 chr7 84350774 84350868 + 2 NA Intergenic Intergenic -156032 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 153-92 chr7 52621690 52621822 + 2 NA Intergenic L1MD3|LINE|L1 -413877 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 349-172 chr14 87847473 87847686 + 2 NA Intergenic Intergenic 145603 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 219-6 chr1 60071693 60071892 + 2 NA intron (NM_152377, intron 2 of 11) intron (NM_152377, intron 2 of 11) 1978 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 384-138 chr16 73342180 73342406 + 2 NA Intergenic L1MC4a|LINE|L1 -44512 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 266-378 chr6 138558553 138558784 + 2 NA intron (NM_020464, intron 1 of 6) AluSc|SINE|Alu 13901 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 227-356 chr7 90647088 90647275 + 2 NA intron (NM_001287135, intron 2 of 14) intron (NM_001287135, intron 2 of 14) 50860 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 291-313 chr4 40989875 40990106 + 2 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -132798 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 201-4 chr1 74984702 74984858 + 2 NA Intergenic L2c|LINE|L2 -143654 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 391-149 chr18 69755275 69755639 + 2 NA intron (NM_152721, intron 6 of 7) intron (NM_152721, intron 6 of 7) 192416 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 546-126 chr20 22129079 22129457 + 2 NA Intergenic L1MA9|LINE|L1 75178 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 451-151 chr3 127833817 127834230 + 2 NA Intergenic Intergenic -10773 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 363-412 chr7 40437618 40437846 + 2 NA intron (NM_024728, intron 9 of 14) MamGypsy2-I|LTR|Gypsy 302756 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 606-65 chr17 77712915 77713351 + 2 NA Intergenic L1ME1|LINE|L1 15426 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 244-257 chr4 57650250 57650463 + 2 NA Intergenic Intergenic 224484 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 233-257 chr4 45182702 45182862 + 2 NA Intergenic Intergenic -456148 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 378-127 chr14 24723105 24723369 + 2 NA Intergenic Intergenic -89047 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 251-428 chr9 132788749 132788967 + 2 NA intron (NM_001317959, intron 13 of 14) L1M6|LINE|L1 -89486 NM_001316898 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 485-36 chr10 106664210 106664585 + 2 NA intron (NM_001206569, intron 17 of 25) AluY|SINE|Alu 500309 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 135-11 chr11 39290880 39291010 + 2 NA Intergenic L2|LINE|L2 642087 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 310-43 chr10 65900752 65900993 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 329447 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 499-16 chr1 219315131 219315558 + 2 NA Intergenic Intergenic 140375 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 241-343 chr6 141709792 141709982 + 2 NA Intergenic L1PA16|LINE|L1 378912 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 324-340 chr3 26860586 26860748 + 2 NA Intergenic Intergenic 166110 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 311-278 chr2 198995608 198995858 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 462206 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 486-240 chr5 41770384 41770761 + 2 NA intron (NR_157114, intron 12 of 15) intron (NR_157114, intron 12 of 15) 73085 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 398-191 chr21 20090232 20090478 + 2 NA Intergenic L1ME1|LINE|L1 168330 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 274-394 chr8 114416348 114416599 + 2 NA Intergenic L1M1|LINE|L1 -979534 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 683-5 chr10 33960372 33960829 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -187920 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 270-100 chr13 91697634 91697800 + 2 NA intron (NM_004466, intron 3 of 7) intron (NM_004466, intron 3 of 7) 299096 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 416-102 chr12 128770388 128770783 + 2 NA Intergenic Intergenic 53373 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 303-224 chr2 150715380 150715602 + 2 NA Intergenic MIR|SINE|MIR 86594 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 448-193 chr4 159026600 159026992 + 2 NA intron (NM_152543, intron 1 of 4) intron (NM_152543, intron 1 of 4) 8433 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 412-145 chr19 53274783 53275155 + 2 NA Intergenic Intergenic -7304 NM_173857 317703 Hs.553685 NM_173857 ENSG00000228567 VN1R4 V1RL4 vomeronasal 1 receptor 4 protein-coding 302-141 chr15 42383954 42384231 + 2 NA intron (NM_000070, intron 1 of 23) intron (NM_000070, intron 1 of 23) -18298 NM_173088 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 418-117 chr2 81377305 81377537 + 2 NA Intergenic Intergenic 89525 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 310-205 chr18 70353355 70353534 + 2 NA TTS (NR_126336) TTS (NR_126336) -15264 NR_146458 102724895 NR_146458 LIVAR lnc18q22.2 liver cell viability associated lncRNA ncRNA 488-157 chr20 39166936 39167234 + 2 NA Intergenic Intergenic 57663 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 255-139 chr16 13752399 13752545 + 2 NA Intergenic Intergenic -167685 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 277-459 chrX 57143503 57143671 + 2 NA Intergenic AluSx|SINE|Alu -5962 NM_019003 54466 Hs.460725 NM_019003 ENSG00000147059 SPIN2A DXF34|SPIN2|TDRD25|dJ323P24.1 spindlin family member 2A protein-coding 231-125 chr17 53321109 53321317 + 2 NA Intergenic L1MC1|LINE|L1 335708 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 209-23 chr1 224263679 224263804 + 2 NA intron (NM_002533, intron 18 of 22) Charlie4a|DNA|hAT-Charlie -6631 NR_031574 100313769 NR_031574 ENSG00000221406 MIR320B2 MIR320B-2|MIRN320B2|mir-320b-2 microRNA 320b-2 ncRNA 295-98 chr12 50604870 50605072 + 2 NA intron (NM_173602, intron 1 of 37) MER105|DNA|hAT-Charlie 99986 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 332-392 chr4 170539202 170539492 + 2 NA Intergenic Intergenic 204388 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 357-157 chr17 70564649 70564963 + 2 NA Intergenic Intergenic 395271 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 415-73 chr14 72500292 72500626 + 2 NA intron (NM_001370280, intron 13 of 17) intron (NM_001370280, intron 13 of 17) -16361 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 708-65 chr6 18822367 18822872 + 2 NA Intergenic Intergenic 250835 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 419-31 chr10 54913040 54913288 + 2 NA intron (NM_001354404, intron 3 of 34) MSTA-int|LTR|ERVL-MaLR -111873 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 294-170 chr17 71932717 71932984 + 2 NA Intergenic Intergenic 93129 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 208-143 chr2 228448070 228448225 + 2 NA Intergenic L1M4|LINE|L1 163248 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 335-273 chr2 167449294 167449502 + 2 NA Intergenic L1PBa1|LINE|L1 262026 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 239-422 chr8 129789409 129789555 + 2 NA Intergenic L1MA3|LINE|L1 -2858 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 183-40 chr12 119211018 119211126 + 2 NA Intergenic MIRc|SINE|MIR 32282 NM_014365 26353 Hs.400095 NM_014365 ENSG00000152137 HSPB8 CMT2L|DHMN2|E2IG1|H11|HMN2|HMN2A|HSP22 heat shock protein family B (small) member 8 protein-coding 419-40 chr10 107568301 107568662 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -403775 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 122-47 chr6 69962238 69962356 + 2 NA intron (NM_001858, intron 10 of 50) intron (NM_001858, intron 10 of 50) 95741 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 227-109 chr14 64849702 64849854 + 2 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) -26398 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 402-47 chr11 50602690 50602937 + 2 NA Intergenic ALR/Alpha|Satellite|centr 193666 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 306-56 chr10 64589308 64589571 + 2 NA Intergenic AluJr|SINE|Alu -236089 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 305-240 chr2 28114512 28114790 + 2 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 92310 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 383-55 chr11 78607231 78607571 + 2 NA Intergenic Intergenic -32537 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 364-51 chr10 30113588 30113937 + 2 NA intron (NM_001350022, intron 1 of 4) intron (NM_001350022, intron 1 of 4) 1732 NM_001350022 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 248-365 chr7 13706539 13706748 + 2 NA Intergenic Intergenic 279871 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 271-224 chr2 229543671 229543918 + 2 NA intron (NM_139072, intron 5 of 12) intron (NM_139072, intron 5 of 12) 170761 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 557-194 chr8 68288382 68288895 + 2 NA Intergenic LTR26C|LTR|ERV1 -41735 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 408-348 chr8 135369420 135369808 + 2 NA Intergenic L3b|LINE|CR1 -87842 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 328-113 chr12 84948611 84948892 + 2 NA Intergenic Intergenic -35922 NM_018057 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 356-184 chr16 62595392 62595633 + 2 NA Intergenic AluSz6|SINE|Alu -559074 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 365-323 chr5 84978553 84978892 + 2 NA Intergenic L1PA4|LINE|L1 -593842 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 226-25 chr1 223832039 223832216 + 2 NA intron (NM_005426, intron 1 of 18) intron (NM_005426, intron 1 of 18) 13820 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 226-99 chr15 49706550 49706730 + 2 NA Intergenic Intergenic 85592 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 249-156 chr17 76193417 76193620 + 2 NA intron (NM_052916, intron 2 of 18) intron (NM_052916, intron 2 of 18) 46975 NM_001330501 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 551-128 chr4 18888615 18888995 + 2 NA Intergenic LTR87|LTR|ERVL? -866930 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 210-167 chr3 2391382 2391545 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 152634 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 255-169 chr18 28799260 28799398 + 2 NA Intergenic Intergenic -622199 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 709-12 chr11 43705089 43705530 + 2 NA intron (NM_016142, intron 1 of 10) intron (NM_016142, intron 1 of 10) 24571 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 324-233 chr19 7762278 7762535 + 2 NA promoter-TSS (NR_026707) promoter-TSS (NR_026707) -837 NM_001144906 10332 Hs.421437 NM_014257 ENSG00000104938 CLEC4M CD209L|CD299|DC-SIGN2|DC-SIGNR|DCSIGNR|HP10347|L-SIGN|LSIGN C-type lectin domain family 4 member M protein-coding 283-102 chr12 58529043 58529269 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -62546 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 514-281 chr8 65399901 65400245 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 162593 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 256-53 chr10 108393532 108393742 + 2 NA Intergenic Intergenic -324344 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 779 chr1 23878541 23879083 + 2 NA intron (NM_001841, intron 1 of 1) L1ME3A|LINE|L1 -10443 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 525-250 chr7 112705410 112705799 + 2 NA intron (NR_110158, intron 7 of 7) L1MCa|LINE|L1 83223 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 240-371 chr6 21276563 21276747 + 2 NA Intergenic Intergenic 235237 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 858-35 chr4 173848402 173848898 + 2 NA Intergenic AluJo|SINE|Alu -48623 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 486-151 chr2 126334264 126334626 + 2 NA Intergenic L1PA16|LINE|L1 -216460 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 313-80 chr11 57001254 57001547 + 2 NA Intergenic HUERS-P2-int|LTR|ERV1 12486 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 253-226 chr20 52558392 52558634 + 2 NA Intergenic L1MA5A|LINE|L1 -62325 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 367-413 chr7 33700227 33700440 + 2 NA Intergenic Intergenic -204582 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 285-354 chr5 135756174 135756383 + 2 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) 46797 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 597-25 chr10 90078511 90079075 + 2 NA Intergenic MIR3|SINE|MIR -121420 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 329-411 chr4 63925009 63925308 + 2 NA Intergenic Intergenic 484292 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 287-200 chr2 112078117 112078387 + 2 NA intron (NM_001329914, intron 6 of 18) MLT1A1|LTR|ERVL-MaLR 22983 NM_032824 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 416-152 chr19 9453582 9453890 + 2 NA Intergenic Intergenic -18158 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 373-50 chr10 49063055 49063412 + 2 NA intron (NM_001031746, intron 5 of 7) AluSq2|SINE|Alu 52289 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 543-74 chr14 52121652 52122037 + 2 NA Intergenic LTR8B|LTR|ERV1 -52785 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 376-80 chr12 24223095 24223349 + 2 NA promoter-TSS (NR_120473) promoter-TSS (NR_120473) -49 NR_120473 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 336-76 chr10 105255415 105255677 + 2 NA intron (NM_014978, intron 23 of 26) intron (NM_014978, intron 23 of 26) 564787 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 198-111 chr19 57636017 57636206 + 2 NA intron (NM_001322306, intron 3 of 4) L1MB3|LINE|L1 2943 NM_198855 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 330-471 chr6 148713774 148713955 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -33166 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 196-142 chr2 186744253 186744374 + 2 NA intron (NM_177454, intron 3 of 7) intron (NM_177454, intron 3 of 7) 50253 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 740-14 chr10 44462811 44463366 + 2 NA Intergenic L2a|LINE|L2 -77991 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 336-498 chr6 161611792 161612008 + 2 NA intron (NM_004562, intron 7 of 11) Tigger1|DNA|TcMar-Tigger 140923 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 316-413 chr4 161151841 161152017 + 2 NA Intergenic Intergenic -870804 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 145-51 chr2 171112987 171113081 + 2 NA intron (NM_012290, intron 2 of 20) L1M5|LINE|L1 -46061 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 543-253 chr8 132529182 132529554 + 2 NA Intergenic Intergenic 32111 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 417-141 chr2 83254177 83254562 + 2 NA Intergenic MIR|SINE|MIR -268445 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 139-19 chr12 4678944 4679055 + 2 NA intron (NM_005002, intron 8 of 10) L1MB8|LINE|L1 29885 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 217-247 chr3 191184423 191184557 + 2 NA Intergenic L1ME1|LINE|L1 -14751 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 279 chr1 1277889 1278083 + 2 NA Intergenic MER4B-int|LTR|ERV1 -2450 NR_037668 6339 Hs.512681 NM_002978 ENSG00000162572 SCNN1D ENaCd|ENaCdelta|SCNED|dNaCh sodium channel epithelial 1 delta subunit protein-coding 249-280 chr3 179904154 179904381 + 2 NA intron (NR_110061, intron 3 of 3) intron (NR_110061, intron 3 of 3) 4730 NR_110061 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 449-199 chr4 172682389 172682730 + 2 NA intron (NR_125894, intron 1 of 2) MER53|DNA|hAT 6358 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 202-232 chr7 7405851 7406014 + 2 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 129941 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 207-116 chr18 76071238 76071431 + 2 NA Intergenic Intergenic -51664 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 347-419 chr5 157670964 157671155 + 2 NA promoter-TSS (NM_001145132) promoter-TSS (NM_001145132) 421 NM_001308165 11063 Hs.529462 NM_007017 ENSG00000039600 SOX30 - SRY-box transcription factor 30 protein-coding 376-371 chr7 37552626 37552898 + 2 NA Intergenic LTR85b|LTR|Gypsy? -103436 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 406-294 chr8 87082465 87082807 + 2 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 216221 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 329-435 chr5 3824111 3824316 + 2 NA Intergenic Intergenic 228381 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 506-300 chr8 139810724 139811174 + 2 NA intron (NM_001160372, intron 21 of 22) HAL1|LINE|L1 -107826 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 331 chr1 11525980 11526293 + 2 NA intron (NM_020780, intron 12 of 20) L2b|LINE|L2 46981 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 542-222 chr8 88894826 88895277 + 2 NA Intergenic L3|LINE|CR1 -567568 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 203-91 chr18 38852101 38852299 + 2 NA Intergenic (TATATTT)n|Simple_repeat|Simple_repeat 769975 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 327-534 chrX 47754759 47755044 + 2 NA Intergenic Intergenic 47710 NR_033924 392459 Hs.562045 NR_033924 ENSG00000187893 CXXC1P1 CXorf25|NCRNA00236 CXXC finger protein 1 pseudogene 1 pseudo 335-575 chr9 119930498 119930727 + 2 NA Intergenic L1MD|LINE|L1 -4448 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 241-428 chr9 105499148 105499321 + 2 NA intron (NM_001287191, intron 6 of 13) L1MC1|LINE|L1 -20590 NR_104269 26134 Hs.113150 NR_104269 ENSG00000229419 RALGAPA1P1 GARNL2|GARNL2P|RALGAPA1P|bA235C23.1 Ral GTPase activating protein catalytic alpha subunit 1 pseudogene 1 pseudo 263-331 chr5 114658509 114658685 + 2 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 82556 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 446-247 chr5 109349572 109349959 + 2 NA intron (NM_014819, intron 7 of 9) LTR41|LTR|ERVL -23396 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 551-95 chr2 116777351 116777676 + 2 NA Intergenic Intergenic -1037178 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 239-370 chr7 40185826 40186000 + 2 NA intron (NM_024728, intron 3 of 14) intron (NM_024728, intron 3 of 14) 50937 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 474-274 chr7 109209034 109209282 + 2 NA Intergenic Intergenic -324571 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 287-311 chr5 33643081 33643284 + 2 NA intron (NM_001324512, intron 10 of 21) intron (NM_001324512, intron 10 of 21) 202406 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 251-179 chr2 112008235 112008446 + 2 NA intron (NM_006343, intron 13 of 18) intron (NM_006343, intron 13 of 18) -46929 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 268-144 chr16 60349035 60349226 + 2 NA Intergenic Intergenic 10663 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 139-11 chr10 108708853 108708930 + 2 NA Intergenic Intergenic -639598 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 203-51 chr13 47346521 47346680 + 2 NA Intergenic Intergenic -449524 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 267-135 chr16 55194030 55194169 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -130460 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 438-263 chr7 110262230 110262589 + 2 NA Intergenic L1M5|LINE|L1 -302196 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 377-147 chr16 35358209 35358487 + 2 NA Intergenic L1M1|LINE|L1 -5068 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 274-109 chr13 55836506 55836721 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 662159 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 294-178 chr18 54059046 54059327 + 2 NA Intergenic Intergenic 163226 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 446-196 chr3 106070485 106070857 + 2 NA Intergenic Intergenic -201270 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 442-292 chr8 109998303 109998682 + 2 NA Intergenic MER50B|LTR|ERV1 -22721 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 488-60 chr12 13513915 13514304 + 2 NA Intergenic L1MB3|LINE|L1 -137364 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 631-44 chr15 62231381 62231806 + 2 NA Intergenic Intergenic 17202 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 330-284 chr2 116578954 116579133 + 2 NA Intergenic Intergenic 1235228 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 623-96 chr4 126160981 126161509 + 2 NA Intergenic AluYm1|SINE|Alu 653986 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 475-138 chr2 107754477 107754871 + 2 NA intron (NR_126370, intron 1 of 4) intron (NR_126370, intron 1 of 4) 562 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 310-448 chr6 64538267 64538494 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 731544 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 411-36 chr10 83970354 83970652 + 2 NA Intergenic L3|LINE|CR1 -169006 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 297-241 chr2 186163582 186163840 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -77394 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 544-39 chr10 120304837 120305131 + 2 NA Intergenic L1MEc|LINE|L1 50239 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 322-40 chr1 213462899 213463106 + 2 NA Intergenic Intergenic 411761 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 352-401 chr5 15244814 15245031 + 2 NA intron (NR_109944, intron 1 of 2) intron (NR_109944, intron 1 of 2) 21638 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 522-241 chr7 123969565 123970016 + 2 NA intron (NM_003117, intron 5 of 6) L1M2|LINE|L1 -24832 NR_133947 105375483 Hs.435972 NR_133947 ENSG00000241345 LOC105375483 - uncharacterized LOC105375483 ncRNA 612-51 chr18 22288675 22289111 + 2 NA Intergenic L1MEg|LINE|L1 119456 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 598-57 chr18 6172763 6173169 + 2 NA intron (NM_001365769, intron 12 of 16) MER5A|DNA|hAT-Charlie -83778 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 143-67 chr5 86864743 86864864 + 2 NA Intergenic Intergenic 117985 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 506-60 chr11 93359130 93359483 + 2 NA intron (NM_181645, intron 4 of 13) intron (NM_181645, intron 4 of 13) 28589 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 332-591 chrX 89185569 89185764 + 2 NA Intergenic Intergenic 438441 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 276-206 chr19 15739186 15739395 + 2 NA Intergenic Intergenic -2103 NM_013938 26532 Hs.553524 NM_013938 ENSG00000171936 OR10H3 - olfactory receptor family 10 subfamily H member 3 protein-coding 565-166 chr7 4558888 4559343 + 2 NA Intergenic AluJr|SINE|Alu -123180 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 311-80 chr11 38369353 38369551 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 276904 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 522-155 chr20 17368117 17368593 + 2 NA intron (NM_002594, intron 4 of 11) MIR|SINE|MIR 141315 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 569-177 chr8 104070421 104070798 + 2 NA intron (NR_145711, intron 17 of 21) intron (NR_145711, intron 17 of 21) -152726 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 645-12 chr10 108237324 108237925 + 2 NA Intergenic L2c|LINE|L2 -168331 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 271-204 chr2 110996287 110996533 + 2 NA intron (NM_001371254, intron 15 of 18) L1M6|LINE|L1 119178 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 190-195 chr9 34445586 34445757 + 2 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) 12899 NM_147202 203259 Hs.493771 NM_147202 ENSG00000164970 FAM219A C9orf25 family with sequence similarity 219 member A protein-coding 358-94 chr12 34444618 34444870 + 2 NA Intergenic ALR/Alpha|Satellite|centr 422248 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 257-181 chr2 39020884 39021120 + 2 NA intron (NM_005633, intron 10 of 22) intron (NM_005633, intron 10 of 22) -60658 NR_028386 375196 Hs.659035 NR_028386 ENSG00000269210 LOC375196 - uncharacterized LOC375196 ncRNA 225-394 chr9 94199826 94199978 + 2 NA intron (NR_160773, intron 1 of 2) L1M4a2|LINE|L1 4664 NR_046165 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 339-357 chr3 50917642 50917841 + 2 NA intron (NM_004947, intron 4 of 52) intron (NM_004947, intron 4 of 52) 242661 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 184-138 chr5 101710015 101710164 + 2 NA Intergenic MER49|LTR|ERV1 586195 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 301-23 chr1 206953534 206953753 + 2 NA Intergenic Intergenic -7177 NM_002644 5284 Hs.497589 NM_002644 ENSG00000162896 PIGR - polymeric immunoglobulin receptor protein-coding 204-201 chr3 97069420 97069572 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 254902 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 440-259 chr8 141256654 141257072 + 2 NA TTS (NR_161376) TTS (NR_161376) -2234 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 307-64 chr10 77756910 77757205 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -119249 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 475-72 chr13 105546253 105546546 + 2 NA Intergenic Intergenic -40718 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 378-424 chr8 20657405 20657716 + 2 NA Intergenic L2a|LINE|L2 -42634 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 349-411 chr5 42977706 42977983 + 2 NA Intergenic Intergenic 15489 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 367-31 chr1 183111230 183111497 + 2 NA intron (NM_002293, intron 4 of 27) AluSx|SINE|Alu 29907 NR_149048 110841583 Hs.604063 NR_149048 ENSG00000224468 LAMC1-AS1 lnc-LAMC2-1:1 LAMC1 antisense RNA 1 ncRNA 257-451 chrX 65384577 65384776 + 2 NA Intergenic L1MA2|LINE|L1 -104059 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 339-469 chr5 153922787 153923090 + 2 NA Intergenic Intergenic -23951 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 503-266 chr7 68330598 68330970 + 2 NA Intergenic LTR26|LTR|ERV1 310531 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 516-196 chr4 83830923 83831412 + 2 NA Intergenic Intergenic 295059 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 419-97 chr14 69722032 69722300 + 2 NA Intergenic L1MC4|LINE|L1 -44976 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 347-291 chr3 1008555 1008896 + 2 NA Intergenic Intergenic -84299 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 319-506 chr7 69138486 69138655 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 459054 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 418-20 chr1 237609803 237610110 + 2 NA intron (NM_001035, intron 35 of 104) intron (NM_001035, intron 35 of 104) 138837 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 231-195 chr20 61812550 61812698 + 2 NA intron (NM_001252339, intron 3 of 14) Helitron3Na_Mam|RC|Helitron -92876 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 350-500 chr8 6271646 6271952 + 2 NA Intergenic Intergenic 134749 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 254-30 chr1 238448011 238448183 + 2 NA Intergenic Intergenic 37920 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 394-225 chr3 158104445 158104835 + 2 NA intron (NM_001163678, intron 1 of 4) intron (NM_001163678, intron 1 of 4) 1523 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 212-129 chr18 57289496 57289669 + 2 NA Intergenic L1M5|LINE|L1 -62975 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 553-87 chr17 77739171 77739588 + 2 NA Intergenic MER21C|LTR|ERVL -10820 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 462-182 chr3 88600103 88600393 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 261792 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 362-288 chr4 269130 269359 + 2 NA Intergenic (GTACAG)n|Simple_repeat|Simple_repeat 36230 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 255-108 chr14 54419229 54419478 + 2 NA intron (NM_001330173, intron 8 of 8) intron (NM_001330173, intron 8 of 8) 22021 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 399-165 chr2 140074781 140075167 + 2 NA Intergenic L1MA9|LINE|L1 511711 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 363-372 chr5 136745494 136745679 + 2 NA Intergenic L1MA1|LINE|L1 -380110 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 355-59 chr10 79086729 79087041 + 2 NA intron (NM_020338, intron 1 of 24) intron (NM_020338, intron 1 of 24) 17919 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 274-385 chr8 82237981 82238225 + 2 NA Intergenic Intergenic -395817 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 575-146 chr5 35029194 35029514 + 2 NA intron (NM_031900, intron 7 of 13) intron (NM_031900, intron 7 of 13) 18595 NM_001306173 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 230-175 chr2 96304430 96304649 + 2 NA intron (NM_014014, intron 2 of 44) intron (NM_014014, intron 2 of 44) 1007 NM_014014 23020 Hs.246112 NM_014014 ENSG00000144028 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein U5 subunit 200 protein-coding 521-130 chr2 179093501 179093858 + 2 NA Intergenic L1MA2|LINE|L1 -43542 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 296-188 chr17 69908748 69909021 + 2 NA Intergenic Intergenic -52823 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 340-105 chr12 37770397 37770661 + 2 NA Intergenic ALR/Alpha|Satellite|centr -546245 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 488-6 chr1 43189119 43189587 + 2 NA intron (NM_001195831, intron 6 of 23) L1MB7|LINE|L1 -16783 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 323-182 chr16 63935767 63936003 + 2 NA Intergenic L2a|LINE|L2 1186178 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 369-216 chr2 140773652 140773989 + 2 NA intron (NM_018557, intron 33 of 90) intron (NM_018557, intron 33 of 90) -187135 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 371-132 chr16 61097999 61098223 + 2 NA Intergenic L1MA7|LINE|L1 -42345 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 161-60 chr2 186784156 186784256 + 2 NA Intergenic L1M3f|LINE|L1 64964 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 271-248 chr22 28354646 28354827 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -105133 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 320-521 chr7 112625057 112625358 + 2 NA intron (NR_110158, intron 1 of 7) intron (NR_110158, intron 1 of 7) 2826 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 481-198 chr3 83313941 83314413 + 2 NA Intergenic L1MEc|LINE|L1 1328035 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 387-174 chr2 83835785 83836074 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 313115 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 347-123 chr14 45203876 45204191 + 2 NA 3' UTR (NM_018353, exon 17 of 17) 3' UTR (NM_018353, exon 17 of 17) 49169 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 256-186 chr2 19870043 19870234 + 2 NA intron (NR_033875, intron 2 of 9) intron (NR_033875, intron 2 of 9) 1284 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 333-170 chr15 97030843 97031071 + 2 NA Intergenic L1MD1|LINE|L1 247522 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 317-237 chr2 100985601 100985809 + 2 NA intron (NM_002518, intron 16 of 20) MIR|SINE|MIR -8544 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 194-110 chr20 40046864 40046964 + 2 NA Intergenic Intergenic 42453 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 352-357 chr4 47841892 47842150 + 2 NA intron (NR_125881, intron 1 of 2) L2a|LINE|L2 -3915 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 297-479 chr8 99924462 99924641 + 2 NA Intergenic Intergenic -30844 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 465-189 chr3 163186191 163186496 + 2 NA intron (NR_033945, intron 5 of 6) intron (NR_033945, intron 5 of 6) 116958 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 323-102 chr11 128803413 128803647 + 2 NA intron (NM_001167681, intron 6 of 9) intron (NM_001167681, intron 6 of 9) 38939 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 277-60 chr10 81791672 81791907 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -83405 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 188-95 chr2 57425203 57425354 + 2 NA Intergenic Intergenic -482373 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 205-285 chr8 128535791 128535952 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 28808 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 318-347 chr3 26601673 26601942 + 2 NA Intergenic Intergenic -20999 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 177-62 chr16 74128747 74128898 + 2 NA Intergenic Intergenic 86699 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 430-201 chr3 150196090 150196474 + 2 NA Intergenic Intergenic -42237 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 383-281 chr4 55196529 55196747 + 2 NA Intergenic L1MD1|LINE|L1 -71043 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 318-302 chr2 199064813 199065051 + 2 NA Intergenic L1ME3|LINE|L1 393007 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 168-60 chr2 108014610 108014743 + 2 NA TTS (NM_001305007) TTS (NM_001305007) 28152 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 570-89 chr16 79703832 79704215 + 2 NA Intergenic LTR88a|LTR|Gypsy? -66448 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 285-52 chr10 132105294 132105502 + 2 NA intron (NM_001323086, intron 2 of 23) intron (NM_001323086, intron 2 of 23) 39452 NM_001105521 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 578-198 chrX 99802155 99802625 + 2 NA Intergenic Intergenic 607883 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 625-5 chr1 94631448 94631806 + 2 NA intron (NR_160780, intron 4 of 5) L1MB7|LINE|L1 87925 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 285-320 chr5 6825079 6825359 + 2 NA intron (NR_146281, intron 1 of 1) L1M5|LINE|L1 2702 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 545-87 chr16 73946377 73946841 + 2 NA Intergenic Intergenic 268912 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 477-103 chr15 60096492 60096907 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 92388 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 286-320 chr4 94370334 94370550 + 2 NA Intergenic Intergenic -27606 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 196-206 chr5 63530700 63530854 + 2 NA Intergenic Intergenic 431515 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 443-55 chr11 70493350 70493750 + 2 NA intron (NM_133266, intron 6 of 10) intron (NM_133266, intron 6 of 10) 95021 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 353-361 chr4 33263598 33263775 + 2 NA Intergenic Intergenic 776207 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 162-27 chr12 39534827 39534971 + 2 NA Intergenic (AAAG)n|Simple_repeat|Simple_repeat 84904 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 248-145 chr16 78787896 78788114 + 2 NA intron (NM_001291997, intron 7 of 7) L1MB5|LINE|L1 688351 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 503-125 chr17 71039459 71039894 + 2 NA Intergenic Intergenic 162503 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 294-210 chr2 55954462 55954745 + 2 NA Intergenic Intergenic 28473 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 332-101 chr11 91417681 91417934 + 2 NA Intergenic L1ME1|LINE|L1 -548605 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 227-135 chr17 43435909 43436115 + 2 NA Intergenic L2c|LINE|L2 -8695 NR_146952 106660605 NR_146952 ENSG00000267151 MIR2117HG - MIR2117 host gene ncRNA 317-326 chr3 189956904 189957143 + 2 NA 3' UTR (NM_001134418, exon 15 of 15) 3' UTR (NM_001134418, exon 15 of 15) 127101 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 446-40 chr10 43026566 43026996 + 2 NA Intergenic Intergenic 29218 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 268-362 chr7 14139924 14140092 + 2 NA Intergenic L2c|LINE|L2 -148583 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 487-181 chr3 36055692 36056020 + 2 NA Intergenic Intergenic 311380 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 186-38 chr12 96336601 96336765 + 2 NA intron (NM_002595, intron 1 of 16) L1MEg|LINE|L1 63756 NM_002595 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 384-379 chr8 118445144 118445411 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -175724 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 597-33 chr10 131157692 131158110 + 2 NA intron (NM_174937, intron 6 of 11) intron (NM_174937, intron 6 of 11) 62683 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 322-351 chr3 141688842 141689128 + 2 NA intron (NR_136190, intron 5 of 7) intron (NR_136190, intron 5 of 7) 25786 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 198-80 chr16 34609770 34609926 + 2 NA Intergenic Intergenic -228368 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 227-141 chr18 6248245 6248439 + 2 NA intron (NR_158611, intron 4 of 16) L1MC5a|LINE|L1 -8402 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 335-488 chr7 10370478 10370664 + 2 NA Intergenic L1PBa|LINE|L1 -332105 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 505-140 chr2 41657906 41658229 + 2 NA Intergenic Intergenic -219488 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 179-27 chr15 62750252 62750359 + 2 NA intron (NM_015059, intron 30 of 55) intron (NM_015059, intron 30 of 55) -73652 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 496-73 chr14 20973394 20973857 + 2 NA Intergenic Intergenic -16355 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 399-296 chr8 4311625 4311890 + 2 NA intron (NM_033225, intron 3 of 69) L1PA14|LINE|L1 683157 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 452-268 chr8 83798663 83798934 + 2 NA Intergenic L1MA3|LINE|L1 -383989 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 395-303 chr7 11202493 11202803 + 2 NA Intergenic Intergenic 228776 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 462-24 chr10 31269572 31269876 + 2 NA Intergenic Intergenic -48693 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 362-476 chrX 89155046 89155322 + 2 NA Intergenic Intergenic 407959 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 346-27 chr1 172202235 172202495 + 2 NA intron (NR_146559, intron 15 of 20) L1MC|LINE|L1 -57530 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 290-63 chr10 125495678 125495940 + 2 NA Intergenic Intergenic -78562 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 232-215 chr20 42445171 42445335 + 2 NA intron (NM_133170, intron 9 of 31) MIR|SINE|MIR -240230 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 367-406 chr6 162488686 162488986 + 2 NA intron (NM_004562, intron 1 of 11) L2b|LINE|L2 -238296 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 167-56 chr2 79697945 79698060 + 2 NA intron (NM_001282598, intron 2 of 17) MER97c|DNA|hAT-Tip100 -48643 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 291-104 chr12 107797866 107798044 + 2 NA Intergenic Intergenic 23570 NM_203436 121549 Hs.149910 NM_203436 ENSG00000187855 ASCL4 HASH4|bHLHa44 achaete-scute family bHLH transcription factor 4 protein-coding 186-174 chr9 79884277 79884436 + 2 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) 59826 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 275-253 chr3 145389953 145390185 + 2 NA Intergenic L1MB3|LINE|L1 679116 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 390-362 chr7 105309347 105309691 + 2 NA intron (NM_001350746, intron 2 of 14) intron (NM_001350746, intron 2 of 14) -10740 NM_001278273 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 381-346 chr6 162519269 162519510 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -207743 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 306-279 chr20 38623746 38623934 + 2 NA intron (NM_001164431, intron 2 of 14) L2a|LINE|L2 22031 NM_001164431 343578 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 263-70 chr11 38577337 38577583 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 68896 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 313-56 chr10 93218891 93219113 + 2 NA Intergenic L1PA16|LINE|L1 145109 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 362-193 chr17 71417855 71418090 + 2 NA Intergenic MER33|DNA|hAT-Charlie -215793 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 572-73 chr17 79548113 79548539 + 2 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) -32178 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 309-91 chr11 111974849 111975076 + 2 NA exon (NM_001037954, exon 5 of 20) exon (NM_001037954, exon 5 of 20) -2347 NM_033425 85458 Hs.655626 NM_033425 ENSG00000150764 DIXDC1 CCD1 DIX domain containing 1 protein-coding 264-405 chr8 36622194 36622419 + 2 NA Intergenic AluJo|SINE|Alu -162068 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 505-294 chr8 9373219 9373587 + 2 NA Intergenic L1MD2|LINE|L1 48352 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 543-91 chr16 54444015 54444393 + 2 NA Intergenic MIR|SINE|MIR -73505 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 210-213 chr4 166576375 166576537 + 2 NA Intergenic Intergenic 657970 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 345-407 chr5 11868412 11868638 + 2 NA intron (NM_001288717, intron 1 of 20) L1MB4|LINE|L1 35921 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 466-298 chrX 9447633 9448002 + 2 NA Intergenic Intergenic -15478 NM_001139468 6907 Hs.495656 NM_005647 ENSG00000101849 TBL1X EBI|SMAP55|TBL1 transducin beta like 1 X-linked protein-coding 364-99 chr12 14271921 14272238 + 2 NA Intergenic LTR16C|LTR|ERVL -93553 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 380-307 chr5 64011254 64011499 + 2 NA Intergenic Intergenic -49084 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 657-80 chr5 118878563 118879027 + 2 NA intron (NM_001308081, intron 4 of 5) L1PA13|LINE|L1 -95791 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 565-13 chr10 32358227 32358631 + 2 NA intron (NR_104163, intron 1 of 1) AluJb|SINE|Alu 11065 NR_104163 102031319 Hs.128132 NR_104163 ENSG00000229327 LOC102031319 - uncharacterized LOC102031319 ncRNA 235-340 chr7 103470503 103470730 + 2 NA intron (NR_110141, intron 2 of 3) AluJr|SINE|Alu -24409 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 297-286 chr3 13213168 13213399 + 2 NA Intergenic L1MB8|LINE|L1 -139854 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 484-247 chr7 25508486 25508871 + 2 NA Intergenic L1MA3|LINE|L1 154462 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 285-65 chr11 70848794 70849071 + 2 NA intron (NM_012309, intron 10 of 24) intron (NM_012309, intron 10 of 24) -13858 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 255-422 chr8 82178873 82179047 + 2 NA Intergenic Intergenic -336674 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 249-220 chr2 151206062 151206250 + 2 NA Intergenic Intergenic 55707 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 504-281 chr9 113050797 113051123 + 2 NA intron (NM_001282515, intron 1 of 3) HAL1ME|LINE|L1 5764 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 237-97 chr14 45858128 45858270 + 2 NA Intergenic L1ME1|LINE|L1 -142597 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 301-319 chr4 67236731 67236984 + 2 NA Intergenic LTR88b|LTR|Gypsy? 185143 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 548-160 chr4 43049413 43049860 + 2 NA Intergenic Intergenic 156370 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 595-108 chr3 54544917 54545363 + 2 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 94717 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 301-246 chr2 233610553 233610819 + 2 NA Intergenic L1M5|LINE|L1 -6959 NM_019076 54576 Hs.554822 NM_019076 ENSG00000242366 UGT1A8 GNT1|UDPGT|UDPGT 1-8|UGT-1A|UGT-1H|UGT1|UGT1-01|UGT1-08|UGT1.1|UGT1.8|UGT1A|UGT1A1|UGT1A8S|UGT1H|hUG-BR1 UDP glucuronosyltransferase family 1 member A8 protein-coding 261-82 chr12 99486250 99486457 + 2 NA intron (NM_152788, intron 10 of 25) L1PB3|LINE|L1 -161400 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 393-239 chr4 64208040 64208340 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 201260 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 251-316 chr5 124430241 124430428 + 2 NA intron (NR_125774, intron 3 of 5) AluJb|SINE|Alu 8186 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 178-153 chr8 126124244 126124373 + 2 NA Intergenic Intergenic -173111 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 463-104 chr16 13298246 13298613 + 2 NA Intergenic Intergenic 396831 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 225-296 chr5 145598865 145599028 + 2 NA Intergenic Intergenic 236396 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 768-40 chr5 44398111 44398642 + 2 NA intron (NR_108034, intron 2 of 2) intron (NR_108034, intron 2 of 2) -8956 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 424-132 chr2 80376890 80377262 + 2 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 63697 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 536-221 chr8 16038090 16038499 + 2 NA Intergenic Intergenic 147978 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 376-282 chr4 64700024 64700256 + 2 NA Intergenic Intergenic -290680 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 234-238 chr3 77990406 77990624 + 2 NA Intergenic L1MA1|LINE|L1 58448 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 237-187 chr2 110923463 110923633 + 2 NA intron (NM_001371254, intron 11 of 18) MIR|SINE|MIR 190975 NM_001371254 534-186 chr5 708179 708555 + 2 NA Intergenic LTR7B|LTR|ERV1 -15015 NM_007030 11076 Hs.481466 NM_007030 ENSG00000171368 TPPP TPPP/p25|TPPP1|p24|p25|p25alpha tubulin polymerization promoting protein protein-coding 623-123 chr8 257522 258058 + 2 NA Intergenic MER101-int|LTR|ERV1 25334 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 435-53 chr11 115874082 115874423 + 2 NA Intergenic L1ME3A|LINE|L1 -114052 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 443-276 chr7 50886383 50886798 + 2 NA Intergenic L1MC4a|LINE|L1 -93137 NM_001371008 275-69 chr11 85333351 85333574 + 2 NA intron (NM_001142699, intron 3 of 27) L1PA15|LINE|L1 293808 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 362-59 chr10 47074582 47074806 + 2 NA Intergenic L1MCb|LINE|L1 162972 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 229-178 chr2 47852506 47852674 + 2 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) 36129 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 240-380 chr6 88230440 88230576 + 2 NA Intergenic L1MA8|LINE|L1 -63159 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 455-112 chr19 44443645 44443951 + 2 NA intron (NM_001278510, intron 2 of 5) Charlie4a|DNA|hAT-Charlie 4674 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 312-88 chr11 101244143 101244299 + 2 NA Intergenic L1ME3F|LINE|L1 -114408 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 220-352 chr7 109655287 109655452 + 2 NA Intergenic L1MD|LINE|L1 304844 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 187-116 chr3 122200658 122200792 + 2 NA intron (NM_001178065, intron 1 of 6) L1ME3E|LINE|L1 16398 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 983-22 chr8 75499324 75499862 + 2 NA intron (NM_001330561, intron 3 of 11) L1M4|LINE|L1 -40375 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 300-423 chr7 41153783 41154079 + 2 NA Intergenic L2c|LINE|L2 52327 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 250-244 chr20 54542295 54542496 + 2 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 66802 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 310-456 chr6 127073356 127073575 + 2 NA Intergenic Intergenic -45206 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 522-94 chr15 87372768 87373133 + 2 NA Intergenic L1PB2|LINE|L1 -203979 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 371-381 chr8 81079131 81079470 + 2 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 32768 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 151-68 chr6 50038790 50038927 + 2 NA Intergenic Intergenic 11071 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 216-199 chr21 19230784 19230990 + 2 NA Intergenic Intergenic -471075 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 286-361 chr5 94158013 94158252 + 2 NA intron (NM_001145678, intron 20 of 20) MIR|SINE|MIR -46433 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 361-103 chr12 43434680 43434975 + 2 NA intron (NM_025003, intron 18 of 38) intron (NM_025003, intron 18 of 38) 117376 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 216-201 chr21 21937723 21937890 + 2 NA Intergenic Intergenic 160653 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 245-140 chr15 42523689 42523880 + 2 NA intron (NM_130798, intron 5 of 6) intron (NM_130798, intron 5 of 6) 25009 NM_153260 255252 Hs.234681 NM_153260 ENSG00000180979 LRRC57 - leucine rich repeat containing 57 protein-coding 347-273 chr20 54517106 54517360 + 2 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 41640 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 188-125 chr3 17829400 17829508 + 2 NA Intergenic L1ME4a|LINE|L1 86510 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 586-31 chr11 50467394 50467799 + 2 NA Intergenic ALR/Alpha|Satellite|centr 58449 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 366 chr1 5657921 5658157 + 2 NA Intergenic Intergenic 204702 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 281-376 chr5 153671707 153671912 + 2 NA intron (NM_000827, intron 5 of 15) L2a|LINE|L2 179637 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 211-212 chr4 98653009 98653145 + 2 NA intron (NM_005723, intron 1 of 7) intron (NM_005723, intron 1 of 7) 5534 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 380-19 chr1 118526131 118526457 + 2 NA Intergenic L1M1|LINE|L1 -341066 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 307-107 chr12 66456655 66456855 + 2 NA intron (NM_001366722, intron 9 of 24) intron (NM_001366722, intron 9 of 24) 154210 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 279-374 chr6 131223520 131223716 + 2 NA intron (NM_016377, intron 7 of 7) intron (NM_016377, intron 7 of 7) -26786 NM_138633 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 604 chr1 29411939 29412462 + 2 NA Intergenic L1MC5a|LINE|L1 -62086 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 305-176 chr16 48669306 48669545 + 2 NA Intergenic L1MEf|LINE|L1 -59245 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 469-39 chr10 90066548 90066954 + 2 NA Intergenic MIR|SINE|MIR -109378 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 321-186 chr14 88085842 88086029 + 2 NA intron (NR_046094, intron 3 of 3) L1ME3F|LINE|L1 -59623 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 511-30 chr10 113202499 113202849 + 2 NA Intergenic L1M1|LINE|L1 73403 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 217-361 chr8 69323071 69323243 + 2 NA Intergenic D20S16|Satellite|Satellite 125087 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 340-144 chr14 42966764 42967016 + 2 NA Intergenic Intergenic 1360034 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 374-394 chr8 115973825 115974146 + 2 NA intron (NR_046215, intron 9 of 13) Tigger1|DNA|TcMar-Tigger -305010 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 222-270 chr4 71482030 71482168 + 2 NA intron (NM_003759, intron 11 of 22) intron (NM_003759, intron 11 of 22) 143046 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 167-18 chr10 28485852 28485975 + 2 NA intron (NR_134496, intron 1 of 2) intron (NR_134496, intron 1 of 2) 9900 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 295-124 chr14 26321039 26321207 + 2 NA Intergenic L3b|LINE|CR1 232307 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 407-6 chr1 73745375 73745766 + 2 NA Intergenic L1MC4|LINE|L1 70891 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 352-388 chr4 133093622 133093815 + 2 NA TTS (NR_125885) TTS (NR_125885) 55398 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 338-416 chr5 18633748 18633988 + 2 NA Intergenic Intergenic 826594 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 560-172 chr7 48612334 48612827 + 2 NA intron (NM_152701, intron 58 of 61) intron (NM_152701, intron 58 of 61) -311967 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 352-90 chr12 536006 536309 + 2 NA intron (NM_173593, intron 2 of 19) intron (NM_173593, intron 2 of 19) 50329 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 399-309 chr8 95455891 95456140 + 2 NA intron (NR_038207, intron 2 of 2) L1MEj|LINE|L1 -186814 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 259-189 chr2 33501018 33501204 + 2 NA intron (NM_001349975, intron 3 of 19) L1MB7|LINE|L1 -12764 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 413-50 chr11 28523130 28523468 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -45751 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 437-283 chr8 131307807 131308115 + 2 NA Intergenic L1PA7|LINE|L1 -267052 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 140-60 chr6 52359432 52359509 + 2 NA Intergenic Intergenic -2681 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 293-72 chr11 133483468 133483654 + 2 NA intron (NM_001012393, intron 1 of 7) (GATA)n|Simple_repeat|Simple_repeat 48940 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 211-30 chr10 49262909 49263107 + 2 NA Intergenic Intergenic 35885 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 248-46 chr10 80687315 80687470 + 2 NA Intergenic MER49|LTR|ERV1 37595 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 271-295 chr4 30606121 30606284 + 2 NA Intergenic Intergenic -114167 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 270-102 chr13 97504550 97504715 + 2 NA Intergenic MADE2|DNA|TcMar-Mariner 70463 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 771-58 chr3 193405310 193405904 + 2 NA intron (NM_032279, intron 29 of 29) MLT1L|LTR|ERVL-MaLR -26854 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 431-97 chr16 26491553 26491778 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger 466428 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 284-254 chr3 19269442 19269664 + 2 NA intron (NM_144633, intron 2 of 15) intron (NM_144633, intron 2 of 15) 45378 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 284-74 chr11 78659053 78659287 + 2 NA intron (NM_001098816, intron 33 of 33) L2c|LINE|L2 -84306 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 185-203 chr8 83684165 83684301 + 2 NA Intergenic Intergenic 280475 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 305-22 chr1 106616574 106616865 + 2 NA Intergenic Intergenic -201520 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 390-434 chrX 93748247 93748551 + 2 NA Intergenic L2|LINE|L2 74193 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 538-186 chr4 175040193 175040536 + 2 NA Intergenic Intergenic 122006 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 161-31 chr15 67619275 67619412 + 2 NA intron (NM_001206804, intron 8 of 21) L2a|LINE|L2 70249 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 518-227 chr5 43830567 43830966 + 2 NA Intergenic Intergenic -227536 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 424-183 chr4 11825184 11825472 + 2 NA Intergenic L2|LINE|L2 42150 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 369-312 chr5 21103516 21103822 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -355811 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 375-421 chr8 128290443 128290729 + 2 NA Intergenic Intergenic 140470 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 603-83 chr2 53052782 53053157 + 2 NA Intergenic L1MC1|LINE|L1 -350354 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 238-276 chr4 128439744 128439877 + 2 NA intron (NR_125882, intron 1 of 8) L1PA13|LINE|L1 11794 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 462-5 chr1 60852274 60852582 + 2 NA Intergenic Intergenic -26844 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 349-168 chr14 79175541 79175718 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -24353 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 594-111 chr5 39844056 39844546 + 2 NA Intergenic L1MA5A|LINE|L1 -207990 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 351-471 chr8 36062208 36062483 + 2 NA Intergenic LTR8B|LTR|ERV1 -352025 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 354-460 chr8 66728021 66728280 + 2 NA intron (NM_001033578, intron 1 of 16) L1MB7|LINE|L1 15369 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 341-415 chr5 4231448 4231784 + 2 NA Intergenic Intergenic -541865 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 392-79 chr14 20095767 20096067 + 2 NA Intergenic (ATATCT)n|Simple_repeat|Simple_repeat -21551 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 465-215 chr5 13072407 13072709 + 2 NA Intergenic Intergenic -39672 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 188-100 chr2 85570344 85570525 + 2 NA Intergenic Intergenic -7152 NM_003761 8673 Hs.714302 NM_003761 ENSG00000118640 VAMP8 EDB|VAMP-8 vesicle associated membrane protein 8 protein-coding 160-124 chr8 115188631 115188747 + 2 NA Intergenic Plat_L3|LINE|CR1 479324 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 222-157 chr19 30357027 30357215 + 2 NA Intergenic L2a|LINE|L2 -15263 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 407-192 chr3 45315606 45315891 + 2 NA Intergenic Intergenic -72828 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 551-69 chr17 34554065 34554508 + 2 NA Intergenic MIR3|SINE|MIR 25083 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 802-23 chr17 33476603 33477252 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 56833 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 331-139 chr13 78885719 78885992 + 2 NA Intergenic Intergenic -45805 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 119-57 chr8 31798966 31799076 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 159269 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 375-351 chr6 61854232 61854513 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 280242 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 455-298 chr9 36821175 36821577 + 2 NA Intergenic Intergenic 2223 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 307-440 chr6 161653764 161654033 + 2 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 182921 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 245-203 chr2 145181827 145182020 + 2 NA Intergenic Intergenic 513956 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 329-522 chr7 7346529 7346812 + 2 NA Intergenic Intergenic 91516 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 352-106 chr12 60375685 60375863 + 2 NA Intergenic L1PA10|LINE|L1 686404 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 816-30 chr3 134121949 134122476 + 2 NA Intergenic L1PB4|LINE|L1 -64564 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 711-39 chr20 46465355 46466005 + 2 NA promoter-TSS (NR_026640) promoter-TSS (NR_026640) -388 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 318-584 chr9 135598156 135598360 + 2 NA Intergenic HERV35I-int|LTR|ERV1 23333 NR_034016 100130954 Hs.550769 NR_034016 ENSG00000237339 LINC01502 - long intergenic non-protein coding RNA 1502 ncRNA 451-84 chr16 13426921 13427325 + 2 NA Intergenic Intergenic -493034 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 235-375 chr8 131117374 131117603 + 2 NA Intergenic L1MA1|LINE|L1 -76579 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 293-365 chr6 40068769 40068944 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -134394 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 265-42 chr10 90326311 90326519 + 2 NA Intergenic Intergenic 214390 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 320-567 chr8 120629465 120629759 + 2 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -131641 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 374-405 chr8 137482289 137482532 + 2 NA Intergenic L2|LINE|L2 -68822 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 381-241 chr3 6617680 6617994 + 2 NA Intergenic Intergenic 187612 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 199-228 chr7 115921983 115922128 + 2 NA Intergenic LTR81B|LTR|Gypsy 46258 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 382-32 chr10 44533849 44534152 + 2 NA Intergenic L1MDa|LINE|L1 -148903 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 317-185 chr17 48766340 48766613 + 2 NA intron (NM_001366314, intron 13 of 13) intron (NM_001366314, intron 13 of 13) 27848 NM_173623 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 291-178 chr17 70816083 70816346 + 2 NA Intergenic L1MEd|LINE|L1 385965 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 261-193 chr2 137735821 137735989 + 2 NA Intergenic L1P3|LINE|L1 192027 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 151-14 chr10 81409615 81409721 + 2 NA Intergenic L1ME1|LINE|L1 -465526 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 589-147 chr7 41541571 41541959 + 2 NA Intergenic Intergenic -152154 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 300-496 chrX 19819908 19820134 + 2 NA intron (NM_031892, intron 2 of 17) L1MD2|LINE|L1 13130 NM_001353893 30011 Hs.726365 NM_031892 ENSG00000147010 SH3KBP1 AGMX2|CD2BP3|CIN85|GIG10|HSB-1|HSB1|IMD61|MIG18 SH3 domain containing kinase binding protein 1 protein-coding 267-163 chr19 33848795 33849030 + 2 NA Intergenic L1ME1|LINE|L1 52042 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 566-58 chr15 97704826 97705186 + 2 NA Intergenic Intergenic -144308 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 488-303 chrX 95947618 95948066 + 2 NA Intergenic L2a|LINE|L2 390060 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 311-27 chr1 164179223 164179386 + 2 NA Intergenic Intergenic -380056 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 405-118 chr18 39588686 39589040 + 2 NA intron (NR_024391, intron 2 of 3) L3b|LINE|CR1 33312 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 206-76 chr15 61441956 61442131 + 2 NA Intergenic Intergenic -212741 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 431-194 chr4 39386650 39387023 + 2 NA Intergenic L1MC4a|LINE|L1 -20094 NM_175737 152831 Hs.90756 NM_175737 ENSG00000134962 KLB BKL klotho beta protein-coding 230-402 chrX 11324443 11324613 + 2 NA intron (NR_109776, intron 1 of 14) HSMAR2|DNA|TcMar-Mariner -5842 NR_049865 100847063 NR_049865 ENSG00000263652 MIR548AX - microRNA 548ax ncRNA 126-20 chr14 18311350 18311431 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -289727 NM_001013354 440153 Hs.534880 NM_001013354 ENSG00000257115 OR11H12 - olfactory receptor family 11 subfamily H member 12 protein-coding 193-49 chr12 113568302 113568439 + 2 NA Intergenic Intergenic 96367 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 546-55 chr12 71087028 71087504 + 2 NA Intergenic L1MA2|LINE|L1 70543 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 360-333 chr4 93256917 93257195 + 2 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -571697 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 181-74 chr2 142463142 142463292 + 2 NA Intergenic HERV16-int|LTR|ERVL -331516 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 717-47 chr2 196164345 196164920 + 2 NA intron (NM_004226, intron 1 of 7) intron (NM_004226, intron 1 of 7) 6946 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 325-260 chr2 43104179 43104421 + 2 NA Intergenic L2a|LINE|L2 -1855 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 259-114 chr14 53259729 53259958 + 2 NA Intergenic MER4-int|LTR|ERV1 106489 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 374-360 chr7 46866118 46866448 + 2 NA Intergenic L1MDa|LINE|L1 -169161 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 315-192 chr17 57427458 57427731 + 2 NA intron (NM_001322250, intron 6 of 13) MIR|SINE|MIR 96003 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 553-201 chr5 180444379 180444806 + 2 NA Intergenic U6|snRNA|snRNA -49787 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 276-111 chr12 41608237 41608473 + 2 NA Intergenic MIRb|SINE|MIR -155834 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 395-294 chr6 118954495 118954765 + 2 NA Intergenic Intergenic -19468 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 283-393 chr6 61651060 61651252 + 2 NA intron (NR_146874, intron 13 of 13) MIR|SINE|MIR 77026 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 449-160 chr22 50421215 50421541 + 2 NA intron (NM_001242899, intron 8 of 22) FRAM|SINE|Alu 13936 NR_162128 113218480 NR_162128 MIR12114 - microRNA 12114 ncRNA 388-263 chr5 1684748 1685125 + 2 NA Intergenic Intergenic 23932 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 307-482 chr8 79255490 79255683 + 2 NA Intergenic Intergenic -76602 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 320-607 chrX 62655891 62656170 + 2 NA Intergenic ALR/Alpha|Satellite|centr 695302 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 209-147 chr2 44830591 44830730 + 2 NA Intergenic L1ME4a|LINE|L1 108228 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 230-94 chr13 21774936 21775121 + 2 NA Intergenic MLT2C1|LTR|ERVL 103132 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 522-45 chr11 50639749 50640145 + 2 NA Intergenic ALR/Alpha|Satellite|centr 230800 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 483-165 chr3 57361445 57361791 + 2 NA intron (NM_001366028, intron 58 of 73) intron (NM_001366028, intron 58 of 73) -68933 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 163-92 chr4 30851735 30851854 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 131425 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 397-114 chr17 19790588 19790920 + 2 NA intron (NM_014683, intron 20 of 26) L1M1|LINE|L1 -42456 NM_001330150 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 367-336 chr4 176472816 176473177 + 2 NA Intergenic Intergenic 153030 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 259-175 chr19 30396157 30396349 + 2 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 23869 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 497-110 chr2 3082658 3083025 + 2 NA intron (NR_110228, intron 3 of 6) L1PA4|LINE|L1 43185 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 745-30 chr2 83088425 83089031 + 2 NA Intergenic Intergenic 231925 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 502-19 chr1 196541555 196541947 + 2 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 40730 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 465-278 chr7 109679935 109680375 + 2 NA Intergenic Intergenic 280058 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 570-159 chr5 73975262 73975606 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 161888 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 192-145 chr4 56519791 56519975 + 2 NA intron (NM_206919, intron 3 of 3) AluSz6|SINE|Alu -10723 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 480-314 chr9 37868213 37868545 + 2 NA TTS (NM_024345) TTS (NM_024345) 35748 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 380-343 chr6 74498118 74498493 + 2 NA intron (NR_110856, intron 2 of 3) L1ME3|LINE|L1 428854 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 468-149 chr2 105727566 105727946 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -17156 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 298-259 chr20 53852856 53853140 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 22711 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 248-389 chr7 119330567 119330788 + 2 NA Intergenic L1PA16|LINE|L1 576698 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 273-209 chr2 36122377 36122621 + 2 NA Intergenic L1PA12|LINE|L1 233071 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 328-122 chr13 21770950 21771233 + 2 NA Intergenic Intergenic 100018 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 334-589 chrX 85581581 85581775 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -202013 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 250-271 chr3 37508016 37508153 + 2 NA intron (NM_002207, intron 7 of 27) MER103C|DNA|hAT-Charlie 55943 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 243-45 chr10 61022232 61022378 + 2 NA intron (NR_108052, intron 1 of 1) intron (NR_108052, intron 1 of 1) 6030 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 352-237 chr2 61626216 61626512 + 2 NA Intergenic AluJr|SINE|Alu -88008 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 386-126 chr16 80114975 80115207 + 2 NA Intergenic Intergenic 319842 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 288-381 chr6 130657540 130657763 + 2 NA Intergenic Intergenic -169754 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 285-149 chr16 86109365 86109616 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -86691 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 306-36 chr1 179989284 179989534 + 2 NA intron (NM_014810, intron 3 of 37) AluJb|SINE|Alu 34599 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 452-67 chr13 49964835 49965197 + 2 NA Intergenic AluY|SINE|Alu -28515 NM_001127482 57213 Hs.44235 NM_020456 ENSG00000123178 SPRYD7 C13orf1|CLLD6 SPRY domain containing 7 protein-coding 307 chr1 7032571 7032816 + 2 NA intron (NM_001349608, intron 2 of 21) L1MEc|LINE|L1 247239 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 366-447 chr8 109082646 109082963 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -3824 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 606-71 chr18 58545519 58545942 + 2 NA intron (NM_052947, intron 4 of 12) intron (NM_052947, intron 4 of 12) -54890 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 314-41 chr1 209418296 209418549 + 2 NA Intergenic MIR1_Amn|SINE|MIR -10398 NR_145437 642587 Hs.510543 NR_145433 ENSG00000230937 MIR205HG LINC00510|NPC-A-5 MIR205 host gene ncRNA 372-228 chr2 58015870 58016075 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -30670 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 380-293 chr5 2631848 2632073 + 2 NA Intergenic Intergenic -80631 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 297-392 chr5 174252004 174252275 + 2 NA Intergenic L2c|LINE|L2 -84215 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 132-62 chr5 51042193 51042314 + 2 NA Intergenic Intergenic -72066 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 188-93 chr2 48042416 48042583 + 2 NA Intergenic L1MEc|LINE|L1 -136706 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 308-533 chr9 29720511 29720772 + 2 NA Intergenic Intergenic -507040 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 544-132 chr2 194122608 194123062 + 2 NA Intergenic L1M1|LINE|L1 -221434 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 355-375 chr4 106077764 106077988 + 2 NA intron (NM_001290768, intron 26 of 26) L1PA11|LINE|L1 -55398 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 297-39 chr1 246344669 246344867 + 2 NA intron (NM_022743, intron 2 of 11) L1ME2|LINE|L1 72644 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 226-333 chr8 13137872 13138060 + 2 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) -4677 NM_006094 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 742-76 chr7 81104245 81104854 + 2 NA Intergenic AluY|SINE|Alu -182160 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 308-456 chr7 25371453 25371640 + 2 NA Intergenic HAL1|LINE|L1 -143060 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 821-21 chr18 43640511 43641169 + 2 NA Intergenic MLT2B1|LTR|ERVL -363350 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 269-269 chr4 41706297 41706554 + 2 NA Intergenic L1M5|LINE|L1 42545 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 604-121 chr4 110524030 110524412 + 2 NA intron (NM_001977, intron 10 of 19) intron (NM_001977, intron 10 of 19) 48066 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 290-193 chr19 56527618 56527894 + 2 NA 3' UTR (NM_020813, exon 5 of 5) 3' UTR (NM_020813, exon 5 of 5) -11192 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 241-163 chr19 31586768 31586914 + 2 NA Intergenic L1MEc|LINE|L1 -1348 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 374-352 chr7 4897489 4897743 + 2 NA intron (NR_072989, intron 8 of 8) intron (NR_072989, intron 8 of 8) -13900 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 258-185 chr2 58035508 58035702 + 2 NA intron (NM_001288838, intron 3 of 15) intron (NM_001288838, intron 3 of 15) -11037 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 260-147 chr15 60731596 60731806 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 50132 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 239-293 chr4 159856071 159856270 + 2 NA Intergenic Intergenic -78386 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 417-152 chr2 138397095 138397407 + 2 NA Intergenic L1MA3|LINE|L1 -104519 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 324-431 chr5 81413182 81413477 + 2 NA 3' UTR (NM_001256732, exon 17 of 17) 3' UTR (NM_001256732, exon 17 of 17) -19195 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 300-337 chr4 103603245 103603395 + 2 NA intron (NM_001059, intron 3 of 4) L1PA4|LINE|L1 116665 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 312-197 chr18 5200809 5200993 + 2 NA Intergenic Intergenic -3149 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 343-517 chr7 96370683 96370953 + 2 NA Intergenic AluJo|SINE|Alu -48671 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 440-205 chr5 106834342 106834701 + 2 NA intron (NR_104671, intron 2 of 3) L1MEg1|LINE|L1 176493 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 285-253 chr22 33082280 33082444 + 2 NA Intergenic Intergenic -23981 NM_001135774 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 248-403 chr8 92268693 92268833 + 2 NA Intergenic Intergenic -165378 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 301-471 chr8 140323512 140323737 + 2 NA intron (NM_001160372, intron 9 of 22) MER21B|LTR|ERVL 134120 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 373-418 chr8 101619753 101620065 + 2 NA intron (NM_024915, intron 9 of 15) (T)n|Simple_repeat|Simple_repeat 127470 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 269-331 chr5 164199938 164200177 + 2 NA Intergenic L2a|LINE|L2 267345 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 570-143 chr4 24298118 24298452 + 2 NA intron (NM_001330752, intron 1 of 13) MIR|SINE|MIR 174620 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 353-127 chr13 65371040 65371314 + 2 NA Intergenic L1M5|LINE|L1 -494870 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 373-288 chr4 67640867 67641183 + 2 NA intron (NM_018227, intron 18 of 32) intron (NM_018227, intron 18 of 32) 60130 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 352-242 chr2 84285366 84285646 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -5176 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 491-64 chr14 25165791 25166240 + 2 NA Intergenic Intergenic -115718 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 261-155 chr18 10354331 10354556 + 2 NA Intergenic Intergenic 59927 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 333-424 chr4 186224666 186224891 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -2729 NM_001318396 3818 Hs.237642 NM_000892 ENSG00000164344 KLKB1 KLK3|PKK|PKKD|PPK kallikrein B1 protein-coding 177-153 chr7 87126520 87126634 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 25740 NR_136252 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 133-8 chr10 62720465 62720566 + 2 NA Intergenic L2a|LINE|L2 -84205 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 344-298 chr22 48361930 48362149 + 2 NA Intergenic Intergenic 87675 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 508-224 chr7 83115231 83115689 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 47424 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 350-486 chr7 88269481 88269752 + 2 NA Intergenic Intergenic 37278 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 312-565 chrX 99462781 99462969 + 2 NA Intergenic Intergenic 947398 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 342-564 chr9 135878995 135879283 + 2 NA intron (NM_015447, intron 3 of 16) intron (NM_015447, intron 3 of 16) 28407 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 651 chr1 9445954 9446301 + 2 NA Intergenic AluSx|SINE|Alu -17131 NR_104622 100506022 Hs.131775 NR_104622 ENSG00000284693 LINC02606 - long intergenic non-protein coding RNA 2606 ncRNA 437-144 chr2 138748973 138749280 + 2 NA intron (NM_007226, intron 1 of 1) THE1D|LTR|ERVL-MaLR 31264 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 233-9 chr1 115567582 115567774 + 2 NA Intergenic L1MA4A|LINE|L1 -74292 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 388-227 chr3 78473312 78473602 + 2 NA Intergenic L1PA14|LINE|L1 -424494 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 325-309 chr20 40486647 40486877 + 2 NA Intergenic L1ME4a|LINE|L1 202474 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 294-83 chr12 43036667 43036888 + 2 NA Intergenic Intergenic -118538 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 199-102 chr2 22681217 22681351 + 2 NA Intergenic L1ME3A|LINE|L1 144805 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 521-225 chr6 163050745 163051203 + 2 NA non-coding (NR_110872, exon 2 of 2) non-coding (NR_110872, exon 2 of 2) 3187 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 382-110 chr14 55854928 55855248 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -58414 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 695-27 chr12 63529011 63529422 + 2 NA Intergenic Intergenic 139277 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 324-351 chr3 87104533 87104838 + 2 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 15405 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 312-15 chr1 101516461 101516700 + 2 NA Intergenic L1MA4|LINE|L1 192743 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 254-197 chr2 133131424 133131612 + 2 NA intron (NM_207481, intron 5 of 17) intron (NM_207481, intron 5 of 17) -134677 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 390-254 chr3 181517846 181518097 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -75485 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 209-268 chr5 166901098 166901251 + 2 NA Intergenic Intergenic 25196 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 260-410 chr7 54143978 54144147 + 2 NA Intergenic L1MC3|LINE|L1 -186635 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 492-159 chr21 19430644 19431012 + 2 NA Intergenic AluYb8|SINE|Alu 468927 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 184-150 chr7 3710260 3710380 + 2 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 409068 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 369-313 chr5 23543543 23543812 + 2 NA Intergenic L1PREC2|LINE|L1 36022 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 487-131 chr2 5851507 5851831 + 2 NA Intergenic Intergenic -39073 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 241-177 chr2 25964024 25964196 + 2 NA intron (NM_002254, intron 1 of 7) AluSz6|SINE|Alu 18387 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 1360-8 chr7 153479929 153481063 + 2 NA Intergenic L1MA4A|LINE|L1 -68262 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 399-93 chr14 71182125 71182431 + 2 NA Intergenic L1ME4a|LINE|L1 -138198 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 481-21 chr10 17261112 17261475 + 2 NA Intergenic MIRc|SINE|MIR -31308 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 503-146 chr2 34872375 34872868 + 2 NA Intergenic Intergenic 195064 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 342-11 chr1 66557923 66558119 + 2 NA intron (NM_001350218, intron 1 of 22) intron (NM_001350218, intron 1 of 22) 23868 NM_032291 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 355-158 chr14 70206177 70206530 + 2 NA intron (NR_135825, intron 2 of 3) intron (NR_135825, intron 2 of 3) -17283 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 524-116 chr2 100898839 100899280 + 2 NA intron (NM_002518, intron 1 of 20) L1MC3|LINE|L1 78102 NR_110213 101927142 Hs.656556 NR_110213 LOC101927142 - uncharacterized LOC101927142 ncRNA 338-151 chr13 72040422 72040726 + 2 NA Intergenic Intergenic -173370 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 212-4 chr1 87144867 87145016 + 2 NA intron (NR_026989, intron 2 of 2) MIR|SINE|MIR 13015 NR_026987 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 569-68 chr17 34917751 34918219 + 2 NA Intergenic Intergenic 43475 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 257-148 chr17 57388589 57388769 + 2 NA intron (NM_001322250, intron 5 of 13) AluSz6|SINE|Alu 131660 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 471-39 chr10 125693869 125694193 + 2 NA intron (NR_033848, intron 2 of 4) Tigger5|DNA|TcMar-Tigger 10788 NR_033848 283038 Hs.144911 NR_033848 ENSG00000228021 LOC283038 - uncharacterized LOC283038 ncRNA 196-180 chr4 43594370 43594519 + 2 NA Intergenic Intergenic -101901 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 560-147 chr6 54534390 54534774 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 226141 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 267-436 chr8 134268414 134268602 + 2 NA Intergenic Intergenic -329563 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 331-425 chr5 90005185 90005396 + 2 NA Intergenic L1PB1|LINE|L1 11430 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 188-92 chr2 37644719 37644867 + 2 NA 3' UTR (NM_001270437, exon 2 of 2) 3' UTR (NM_001270437, exon 2 of 2) 27406 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 208-187 chr4 85373731 85373844 + 2 NA Intergenic Intergenic -101363 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 254-67 chr11 116349401 116349566 + 2 NA Intergenic L2b|LINE|L2 -289939 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 197-100 chr2 123042126 123042238 + 2 NA Intergenic L1M3|LINE|L1 31299 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 218-42 chr11 13910416 13910552 + 2 NA Intergenic L1MC|LINE|L1 14379 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 127-16 chr11 30427752 30427858 + 2 NA intron (NM_001584, intron 3 of 5) L1ME4a|LINE|L1 104701 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 137-17 chr12 24118370 24118446 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -94013 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 719-48 chr3 31560047 31560593 + 2 NA intron (NM_178862, intron 1 of 15) L1MA4A|LINE|L1 27395 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 377-366 chr7 34569545 34569819 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -88536 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 490-290 chr8 83161729 83162147 + 2 NA Intergenic Intergenic -241820 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 371-324 chr5 124243103 124243337 + 2 NA intron (NR_125774, intron 4 of 5) MSTD|LTR|ERVL-MaLR 195300 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 292-200 chr2 11315560 11315745 + 2 NA intron (NM_001321643, intron 1 of 32) intron (NM_001321643, intron 1 of 32) 28984 NM_004850 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 516-66 chr13 113573333 113573773 + 2 NA Intergenic AluSp|SINE|Alu -11135 NR_026580 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 247-387 chr7 97458621 97458775 + 2 NA Intergenic AluSz|SINE|Alu -273388 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 280-39 chr1 247042109 247042260 + 2 NA intron (NM_033213, intron 1 of 3) intron (NM_033213, intron 1 of 3) -34127 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 314-601 chr9 28278703 28279001 + 2 NA intron (NM_152570, intron 5 of 6) Tigger1|DNA|TcMar-Tigger 440453 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 337-155 chr14 71240276 71240554 + 2 NA Intergenic Intergenic -80061 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 444-77 chr15 76694566 76694865 + 2 NA intron (NR_148227, intron 20 of 32) intron (NR_148227, intron 20 of 32) 108068 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 359-368 chr4 91524984 91525257 + 2 NA intron (NM_001145065, intron 10 of 10) L3|LINE|CR1 752182 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 283-23 chr1 165373949 165374168 + 2 NA Intergenic Intergenic -17343 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 482-218 chr6 16766826 16767257 + 2 NA TTS (NR_136240) TTS (NR_136240) -5551 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 470-268 chr8 91289826 91290200 + 2 NA intron (NM_134266, intron 3 of 18) MIRb|SINE|MIR 40694 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 176-53 chr2 53880308 53880476 + 2 NA intron (NM_014614, intron 41 of 46) AluSz|SINE|Alu -20359 NM_001164165 100302652 Hs.40763 NM_001164165 ENSG00000270898 GPR75-ASB3 ASB-3|ASB3 GPR75-ASB3 readthrough protein-coding 314-494 chr6 36082771 36083024 + 2 NA intron (NM_001315, intron 8 of 11) intron (NM_001315, intron 8 of 11) -47616 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 436-264 chr6 49014778 49015088 + 2 NA Intergenic Intergenic 448320 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 388-128 chr16 83100865 83101156 + 2 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -110712 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 686-55 chr3 90669183 90669713 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1561827 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 378-135 chr14 51299345 51299571 + 2 NA Intergenic Intergenic 28927 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 430-116 chr17 70967441 70967759 + 2 NA Intergenic L1ME1|LINE|L1 234579 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 314-10 chr1 55552927 55553088 + 2 NA Intergenic L2c|LINE|L2 327366 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 482-177 chr4 19456154 19456515 + 2 NA Intergenic Intergenic -795571 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 217-290 chr5 29772258 29772449 + 2 NA Intergenic MIR|SINE|MIR -108207 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 252-253 chr3 23363351 23363595 + 2 NA intron (NM_001370225, intron 3 of 5) L1PA14|LINE|L1 160146 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 570-131 chr3 21788754 21789312 + 2 NA Intergenic HAL1|LINE|L1 -37823 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 338-194 chr16 59362751 59363023 + 2 NA Intergenic Intergenic 392304 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 117-14 chr17 54860958 54861031 + 2 NA Intergenic Intergenic -39697 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 324-241 chr19 35602997 35603202 + 2 NA Intergenic AluSz|SINE|Alu 5204 NR_110750 102723617 Hs.579904 NR_110750 ENSG00000224910 LINC01766 - long intergenic non-protein coding RNA 1766 ncRNA 257-146 chr17 57038555 57038691 + 2 NA Intergenic Intergenic -6855 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 270-42 chr10 76976097 76976311 + 2 NA intron (NM_001322838, intron 19 of 29) intron (NM_001322838, intron 19 of 29) 88160 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 626-126 chr7 8486742 8487150 + 2 NA intron (NM_152745, intron 2 of 2) L2b|LINE|L2 53337 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 333-380 chr4 30044769 30044941 + 2 NA Intergenic Intergenic -675514 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 668-112 chr9 38176040 38176548 + 2 NA Intergenic L1MC4|LINE|L1 -107067 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 175-148 chr7 8649211 8649370 + 2 NA intron (NM_152745, intron 2 of 2) L1ME3E|LINE|L1 215681 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 615-88 chr3 182378211 182378796 + 2 NA Intergenic Intergenic 107859 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 435-257 chr8 131372737 131373139 + 2 NA Intergenic L1M2a|LINE|L1 -332029 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 363-222 chr2 121221905 121222107 + 2 NA 3' UTR (NM_014553, exon 15 of 15) 3' UTR (NM_014553, exon 15 of 15) 63196 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 562-163 chr4 153671454 153671896 + 2 NA intron (NR_134873, intron 2 of 2) L1M3f|LINE|L1 -12605 NM_001318791 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 301-137 chr15 79101847 79102044 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -11165 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 472-55 chr12 20691818 20692188 + 2 NA Intergenic L1MC5a|LINE|L1 -3352 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 220-119 chr15 63526123 63526311 + 2 NA intron (NM_001256702, intron 1 of 13) intron (NM_001256702, intron 1 of 13) 21624 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 265-249 chr3 152480831 152481046 + 2 NA Intergenic L1PA16|LINE|L1 -139948 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 223-139 chr19 37492904 37493055 + 2 NA Intergenic L1M2|LINE|L1 -13960 NM_001013659 390927 Hs.568010 NM_001013659 ENSG00000188227 ZNF793 - zinc finger protein 793 protein-coding 385-120 chr16 6279425 6279685 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 259852 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 515-208 chr5 74981261 74981534 + 2 NA Intergenic L1ME1|LINE|L1 71161 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 211-79 chr13 102515047 102515229 + 2 NA Intergenic Intergenic -81848 NM_001330588 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 227-309 chr6 50772469 50772661 + 2 NA intron (NM_172238, intron 7 of 7) intron (NM_172238, intron 7 of 7) -46306 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 333-166 chr15 78516409 78516647 + 2 NA intron (NM_001083612, intron 3 of 4) AluJb|SINE|Alu 8951 NM_001013619 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 283-343 chr5 10135043 10135257 + 2 NA Intergenic L1ME3G|LINE|L1 114738 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 618-130 chr8 84274844 84275272 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 90392 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 522-233 chr7 34333959 34334318 + 2 NA Intergenic L2c|LINE|L2 -324080 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 200-205 chr5 24930054 24930190 + 2 NA Intergenic Intergenic -89539 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 244-360 chr8 43522109 43522336 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 229780 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 312-311 chr21 44647953 44648111 + 2 NA TTS (NM_198692) TTS (NM_198692) 1618 NM_198692 386678 Hs.58076 NM_198692 ENSG00000243489 KRTAP10-11 KAP10.11|KAP10.9|KAP18-9|KAP18.11|KRTAP10-9|KRTAP10.9|KRTAP18-11|KRTAP18-9|KRTAP18.11|KRTAP18.9 keratin associated protein 10-11 protein-coding 365-340 chr6 14108408 14108704 + 2 NA Intergenic Intergenic -8700 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 307-504 chr9 7875152 7875335 + 2 NA Intergenic Intergenic -75465 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 215-104 chr16 71682753 71682869 + 2 NA intron (NM_015020, intron 5 of 18) intron (NM_015020, intron 5 of 18) 15890 NR_033337 100379141 Hs.725116 NR_033337 ENSG00000263666 SNORA70D U70D small nucleolar RNA, H/ACA box 70D snoRNA 306-127 chr13 48758547 48758772 + 2 NA Intergenic Intergenic 104730 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 386-217 chr21 33527590 33527885 + 2 NA intron (NM_175085, intron 10 of 10) intron (NM_175085, intron 10 of 10) 14380 NM_000819 2618 Hs.473648 NM_000819 ENSG00000159131 GART AIRS|GARS|GARTF|PAIS|PGFT|PRGS phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding 341-256 chr2 98321499 98321788 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -24512 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 149-11 chr1 235239416 235239560 + 2 NA intron (NR_135074, intron 8 of 24) intron (NR_135074, intron 8 of 24) -49372 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 223-42 chr10 82894061 82894209 + 2 NA intron (NR_163253, intron 6 of 10) L1M5|LINE|L1 -661215 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 239-431 chr9 9163852 9164044 + 2 NA intron (NM_002839, intron 10 of 45) L2c|LINE|L2 305930 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 1113-2 chr17 65642336 65643249 + 2 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -81144 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 683-65 chr5 50250762 50251292 + 2 NA Intergenic ALR/Alpha|Satellite|centr 190261 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 357-77 chr12 698935 699190 + 2 NA Intergenic AluJr|SINE|Alu -35617 NM_016533 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 542-6 chr1 72453151 72453644 + 2 NA Intergenic L1MA4|LINE|L1 -170858 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 505-70 chr13 23439274 23439695 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -5782 NM_014363 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 303-390 chr6 26639536 26639730 + 2 NA intron (NM_001242798, intron 2 of 2) intron (NM_001242798, intron 2 of 2) 20113 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 355-349 chr4 136300 136583 + 2 NA intron (NR_110527, intron 3 of 4) L1M3a|LINE|L1 8320 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 413-45 chr10 123922300 123922634 + 2 NA Intergenic Intergenic -30660 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 323-281 chr2 175966447 175966638 + 2 NA intron (NR_130941, intron 7 of 14) intron (NR_130941, intron 7 of 14) 35725 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 410-7 chr1 90468641 90468979 + 2 NA Intergenic L1PB4|LINE|L1 -188940 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 453-224 chr6 61804686 61804998 + 2 NA intron (NR_146874, intron 6 of 13) THE1C-int|LTR|ERVL-MaLR 230712 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 483-229 chr6 61531582 61531946 + 2 NA Intergenic L1PA7|LINE|L1 -42366 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 305-539 chr8 88909806 88910030 + 2 NA Intergenic Intergenic -582435 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 542-191 chr6 137120136 137120553 + 2 NA Intergenic Intergenic 53300 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 325-36 chr1 209482246 209482409 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 50194 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 371-266 chr4 19874497 19874771 + 2 NA Intergenic MIRb|SINE|MIR -377271 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 690-95 chr7 108372259 108372886 + 2 NA intron (NR_163871, intron 2 of 29) L1MB1|LINE|L1 -44046 NM_001371176 608-74 chr2 133222352 133222853 + 2 NA intron (NM_207481, intron 4 of 17) Charlie1|DNA|hAT-Charlie -43593 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 422-16 chr1 191273766 191274014 + 2 NA Intergenic AluSz6|SINE|Alu -45392 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 341-31 chr1 170127035 170127236 + 2 NA Intergenic L1MD1|LINE|L1 -18912 NM_001136107 149281 Hs.553612 NM_001136107 ENSG00000203740 METTL11B C1orf184|HOMT1B|NTM1B methyltransferase like 11B protein-coding 158-6 chr1 175568908 175569024 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 174629 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 131-70 chr7 50107806 50107873 + 2 NA intron (NM_001161834, intron 2 of 8) intron (NM_001161834, intron 2 of 8) 11753 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 261-308 chr5 51895184 51895395 + 2 NA Intergenic Intergenic -112742 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 217-388 chr9 71500248 71500424 + 2 NA Intergenic L1M2c|LINE|L1 -53365 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 316-255 chr2 29578898 29579179 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -103661 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 283-90 chr11 128075561 128075729 + 2 NA Intergenic L1MEd|LINE|L1 -133121 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 434-174 chr3 10735004 10735402 + 2 NA Intergenic L1MEc|LINE|L1 29006 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 560-162 chr7 7561235 7561599 + 2 NA intron (NR_110084, intron 2 of 4) L1PA13|LINE|L1 4648 NR_110084 101927391 Hs.223837 NR_110084 LOC101927391 - uncharacterized LOC101927391 ncRNA 578-131 chr4 63700246 63700767 + 2 NA Intergenic Intergenic 708944 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 514-276 chr7 113974359 113974740 + 2 NA Intergenic Intergenic -55540 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 229-272 chr4 52046788 52046956 + 2 NA TTS (NR_147189) TTS (NR_147189) 2067 NR_147189 105377652 Hs.298335 NR_147189 ENSG00000251040 LINC02480 - long intergenic non-protein coding RNA 2480 ncRNA 314-282 chr2 67856920 67857079 + 2 NA Intergenic Intergenic -31437 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 441-210 chr5 123451167 123451470 + 2 NA Intergenic Intergenic -27726 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 223-62 chr12 18826945 18827092 + 2 NA Intergenic L1MA10|LINE|L1 88899 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 295-310 chr3 133247975 133248163 + 2 NA non-coding (NR_110812, exon 3 of 3) non-coding (NR_110812, exon 3 of 3) 9052 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 286-408 chr7 27432687 27432935 + 2 NA Intergenic MIR|SINE|MIR -183163 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 311-476 chr7 71201251 71201447 + 2 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) 69205 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 454-81 chr13 31300488 31300806 + 2 NA intron (NM_194318, intron 12 of 14) LTR8B|LTR|ERV1 100672 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 509-208 chr5 160603198 160603595 + 2 NA intron (NM_001366652, intron 19 of 24) MER30|DNA|hAT-Charlie 81995 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 242-396 chr8 91102245 91102450 + 2 NA promoter-TSS (NM_001129890) promoter-TSS (NM_001129890) -272 NM_001129890 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 202-145 chr21 22326132 22326320 + 2 NA Intergenic Intergenic 227609 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 271-27 chr1 213618250 213618477 + 2 NA Intergenic Intergenic -306386 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 377-242 chr2 239770839 239771071 + 2 NA intron (NR_037808, intron 1 of 2) intron (NR_037808, intron 1 of 2) 8095 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 281-417 chr7 68845336 68845598 + 2 NA Intergenic Intergenic 752157 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 696-61 chr2 151139343 151139921 + 2 NA Intergenic Intergenic 122231 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 250-144 chr15 91190731 91190909 + 2 NA intron (NM_001323040, intron 2 of 12) L1M5|LINE|L1 89024 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 487-266 chr7 26001894 26002230 + 2 NA Intergenic Intergenic -52076 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 386-386 chrX 43445906 43446257 + 2 NA Intergenic L1MC3|LINE|L1 -208826 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 675-46 chr2 200271713 200272180 + 2 NA Intergenic Intergenic -33933 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 249-199 chr2 80725895 80726120 + 2 NA Intergenic Intergenic 412628 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 357-110 chr14 41192827 41193147 + 2 NA Intergenic L1MA3|LINE|L1 238276 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 197-191 chr7 41165016 41165157 + 2 NA Intergenic Intergenic 63482 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 274-308 chr5 44109404 44109589 + 2 NA Intergenic Intergenic -279236 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 517-217 chr5 89948861 89949236 + 2 NA Intergenic Intergenic 67672 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 661-89 chr8 32652764 32653161 + 2 NA intron (NM_001322205, intron 1 of 8) MIR1_Amn|SINE|MIR 5873 NM_001322206 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 259-94 chr13 20072641 20072875 + 2 NA intron (NR_148365, intron 21 of 24) L1M5|LINE|L1 -29943 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 347-66 chr11 20098257 20098473 + 2 NA intron (NM_182964, intron 31 of 37) MER103C|DNA|hAT-Charlie -49062 NR_046672 100874014 Hs.557916 NR_046672 ENSG00000254453 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 550-76 chr14 81645172 81645633 + 2 NA Intergenic MIRb|SINE|MIR -22341 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 329-82 chr10 115853396 115853608 + 2 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 341287 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 503-304 chr9 79222620 79222991 + 2 NA Intergenic Intergenic -77139 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 298-243 chr2 190321092 190321340 + 2 NA Intergenic MIRb|SINE|MIR -1390 NM_014362 26275 Hs.656685 NM_014362 ENSG00000198130 HIBCH HIBYLCOAH 3-hydroxyisobutyryl-CoA hydrolase protein-coding 188-222 chrX 78775719 78775864 + 2 NA Intergenic L1PB1|LINE|L1 28071 NM_005296 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 354-384 chr5 150822483 150822823 + 2 NA Intergenic L1MA7|LINE|L1 -23868 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 205-88 chr14 65058173 65058314 + 2 NA intron (NM_002028, intron 11 of 11) L1ME3Cz|LINE|L1 13555 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 325-500 chr7 45671049 45671334 + 2 NA intron (NM_021116, intron 8 of 19) L1MD1|LINE|L1 96823 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 445-86 chr16 17940745 17941126 + 2 NA Intergenic Intergenic 391727 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 422-115 chr17 55116456 55116764 + 2 NA intron (NM_178509, intron 16 of 17) intron (NM_178509, intron 16 of 17) -147825 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 331-316 chr20 42086127 42086311 + 2 NA intron (NM_133170, intron 28 of 31) AluSq|SINE|Alu -467842 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 270-316 chr5 124927352 124927512 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -109399 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 585-51 chr15 67717152 67717598 + 2 NA intron (NM_002757, intron 16 of 20) intron (NM_002757, intron 16 of 20) -108134 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 364-284 chr3 109636714 109637019 + 2 NA Intergenic L2c|LINE|L2 34038 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 298-144 chr15 66986167 66986336 + 2 NA intron (NR_135686, intron 4 of 5) MLT1J1|LTR|ERVL-MaLR -29736 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 540-162 chr4 124143141 124143639 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 369126 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 304-338 chr3 74150971 74151260 + 2 NA Intergenic L1MB4|LINE|L1 341871 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 355-171 chr15 69874325 69874663 + 2 NA Intergenic Intergenic 39260 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 418-167 chr3 114954358 114954748 + 2 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -53928 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 252-164 chr18 5569294 5569481 + 2 NA intron (NM_001281535, intron 3 of 21) intron (NM_001281535, intron 3 of 21) -25048 NM_001330557 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 329-302 chr2 193560557 193560820 + 2 NA Intergenic L1MD3|LINE|L1 -783581 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 157-35 chr13 98756201 98756328 + 2 NA Intergenic L2a|LINE|L2 -3592 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 560-80 chr2 55985390 55985799 + 2 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) -2518 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 279-65 chr11 33231841 33232080 + 2 NA Intergenic Intergenic -24712 NM_001278163 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 245-116 chr13 86660454 86660633 + 2 NA Intergenic Intergenic -251377 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 352-266 chr2 197199518 197199831 + 2 NA TTS (NR_135584) TTS (NR_135584) 1683 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 273-76 chr11 44672919 44673152 + 2 NA Intergenic L1MD3|LINE|L1 -53927 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 254-392 chr7 132557942 132558132 + 2 NA intron (NM_181775, intron 2 of 4) L2c|LINE|L2 18433 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 534-59 chr12 28830980 28831349 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -318114 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 237-89 chr13 56713341 56713528 + 2 NA Intergenic Intergenic -427484 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 553-113 chr2 60848752 60849142 + 2 NA non-coding (NR_033980, exon 3 of 3) non-coding (NR_033980, exon 3 of 3) 32367 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 372-422 chr6 6925971 6926203 + 2 NA Intergenic Intergenic -181656 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 334-59 chr10 72981466 72981760 + 2 NA Intergenic L1MA5A|LINE|L1 -26807 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 501-188 chr4 47490238 47490623 + 2 NA intron (NM_020453, intron 1 of 22) intron (NM_020453, intron 1 of 22) 5155 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 333-219 chr2 7355568 7355839 + 2 NA Intergenic Intergenic -65558 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 1048-6 chr11 34412314 34413048 + 2 NA Intergenic AluJb|SINE|Alu -26253 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 320-7 chr1 43064568 43064817 + 2 NA Intergenic L2c|LINE|L2 -83212 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 294-164 chr17 57385892 57386076 + 2 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 128965 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 565-189 chr9 30537858 30538254 + 2 NA Intergenic L1MA5|LINE|L1 -129602 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 314-547 chr7 125524805 125525105 + 2 NA Intergenic Intergenic -260664 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 322-216 chr18 22885226 22885493 + 2 NA Intergenic L1MEd|LINE|L1 -47969 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 381-252 chr3 71992415 71992710 + 2 NA Intergenic LTR16E1|LTR|ERVL 107893 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 467-126 chr19 47037487 47037921 + 2 NA intron (NM_001321086, intron 2 of 7) intron (NM_001321086, intron 2 of 7) 2387 NM_001321086 4861 Hs.79564 NM_002517 ENSG00000130751 NPAS1 MOP5|PASD5|bHLHe11 neuronal PAS domain protein 1 protein-coding 309-162 chr14 84139643 84139804 + 2 NA Intergenic Intergenic -1132209 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 196-132 chr2 115318915 115319033 + 2 NA intron (NM_001321909, intron 2 of 24) L1MD3|LINE|L1 9737 NM_020868 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 374-349 chr6 155802270 155802478 + 2 NA Intergenic L1ME2|LINE|L1 -144423 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 280-275 chr4 21314872 21315054 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -11057 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 204-314 chrX 66252784 66252972 + 2 NA intron (NR_159801, intron 16 of 21) L1MB8|LINE|L1 85128 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 238-420 chr9 87324156 87324291 + 2 NA Intergenic Intergenic -173005 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 722-38 chr17 48520716 48521138 + 2 NA Intergenic Intergenic 10084 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 302-304 chr3 188817640 188817893 + 2 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 128985 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 473-229 chr5 141198267 141198529 + 2 NA Intergenic Intergenic -1229 NM_018931 56125 Hs.283084 NM_018931 ENSG00000197479 PCDHB11 ME2|PCDH-BETA11 protocadherin beta 11 protein-coding 189-100 chr2 186449073 186449226 + 2 NA Intergenic Intergenic -37111 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 458-73 chr14 60996519 60996867 + 2 NA intron (NR_033344, intron 3 of 16) HAL1|LINE|L1 -15003 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 440-92 chr17 70910684 70911068 + 2 NA Intergenic L1MA4A|LINE|L1 291303 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 380-117 chr14 38610516 38610867 + 2 NA Intergenic L1M2|LINE|L1 -271905 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 458-89 chr15 88775157 88775526 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -28095 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 266-252 chr3 88706534 88706711 + 2 NA Intergenic Intergenic 368166 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 553-213 chr7 48321858 48322269 + 2 NA intron (NM_152701, intron 27 of 61) LTR81A|LTR|Gypsy 150605 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 171-104 chr5 72075209 72075373 + 2 NA Intergenic Intergenic -32184 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 259-222 chr2 212685063 212685244 + 2 NA Intergenic Intergenic -110178 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 195-237 chr8 74457815 74457975 + 2 NA intron (NM_001362931, intron 5 of 5) intron (NM_001362931, intron 5 of 5) -90648 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 305-548 chr8 124919245 124919481 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -22645 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 526-26 chr10 111741459 111741967 + 2 NA Intergenic L1ME3G|LINE|L1 442052 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 400-10 chr1 86052238 86052522 + 2 NA intron (NM_152890, intron 10 of 59) L1MB3|LINE|L1 104091 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 347-14 chr1 83052984 83053252 + 2 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -66910 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 570-122 chr20 31166483 31166874 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -90986 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 749-30 chr14 43273185 43273729 + 2 NA Intergenic L2b|LINE|L2 1233826 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 298-226 chr2 122129065 122129272 + 2 NA Intergenic AluYj4|SINE|Alu 373517 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 182-46 chr13 92760464 92760606 + 2 NA intron (NM_004466, intron 7 of 7) L1M2a|LINE|L1 -38921 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 393-67 chr12 20171977 20172194 + 2 NA Intergenic L1MA3|LINE|L1 -44184 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 439-70 chr12 34512036 34512431 + 2 NA Intergenic ALR/Alpha|Satellite|centr 489737 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 395-169 chr2 78525457 78525815 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -19895 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 496-106 chr16 54390678 54391053 + 2 NA Intergenic Intergenic -20166 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 210-225 chr5 46100127 46100284 + 2 NA Intergenic Intergenic -403825 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 547-202 chr6 56268307 56268682 + 2 NA intron (NM_001318752, intron 1 of 28) L1PA16|LINE|L1 -20914 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 356-43 chr10 17918952 17919176 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -32775 NM_001282734 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 245-176 chr2 5115534 5115695 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -459392 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 515-3 chr1 49500302 49500734 + 2 NA intron (NR_136623, intron 2 of 12) L1PBa|LINE|L1 -28433 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 225-109 chr15 99746470 99746600 + 2 NA Intergenic HAL1|LINE|L1 -13091 NM_001284422 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 260-131 chr14 68345136 68345295 + 2 NA intron (NM_133509, intron 8 of 10) MSTB-int|LTR|ERVL-MaLR 283572 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 413-8 chr1 65305248 65305591 + 2 NA intron (NM_014787, intron 1 of 18) MER112|DNA|hAT-Charlie -4124 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 197-94 chr2 41156318 41156463 + 2 NA Intergenic Intergenic -643955 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 284-229 chr20 15506614 15506863 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 309898 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 260-264 chr3 50944063 50944252 + 2 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) 269077 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 216-79 chr12 129012404 129012549 + 2 NA Intergenic L1MA9|LINE|L1 -97214 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 315-123 chr14 34111297 34111605 + 2 NA Intergenic L1PA17|LINE|L1 -160377 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 325-554 chr8 130390070 130390362 + 2 NA intron (NM_001247996, intron 2 of 30) MER3|DNA|hAT-Charlie 53444 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 547-119 chr20 19141404 19141874 + 2 NA Intergenic Intergenic -71003 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 131-56 chr4 60850316 60850415 + 2 NA Intergenic L1ME1|LINE|L1 -72254 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 414-108 chr16 52848744 52848999 + 2 NA Intergenic L1M2|LINE|L1 204002 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 370-131 chr13 100050551 100050854 + 2 NA Intergenic MER61C|LTR|ERV1 38241 NR_132422 105370333 Hs.186291 NR_132422 ENSG00000274605 LOC105370333 - uncharacterized LOC105370333 ncRNA 467-279 chr8 75050408 75050711 + 2 NA Intergenic L2c|LINE|L2 50404 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 405-157 chr2 133153211 133153589 + 2 NA intron (NM_207481, intron 5 of 17) L1MC2|LINE|L1 -112795 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 219-203 chr20 34340660 34340838 + 2 NA Intergenic L1ME3|LINE|L1 -22524 NM_001257137 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 410-263 chr6 81099792 81100160 + 2 NA Intergenic L1MB3|LINE|L1 652705 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 236-316 chr7 26751938 26752131 + 2 NA intron (NM_003930, intron 4 of 12) L1MC4|LINE|L1 105689 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 206-98 chr18 54346532 54346675 + 2 NA intron (NM_139171, intron 4 of 7) L1MB8|LINE|L1 7970 NR_138549 147323 Hs.438779 NM_139171 ENSG00000174448 STARD6 - StAR related lipid transfer domain containing 6 protein-coding 448-119 chr2 129692178 129692477 + 2 NA Intergenic L1MB8|LINE|L1 185164 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 307-36 chr10 8257713 8257901 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 10498 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 669-54 chr2 126710430 126710965 + 2 NA Intergenic AluSx4|SINE|Alu 54539 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 233-309 chr5 106619713 106619867 + 2 NA Intergenic Intergenic 391224 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 259-301 chr4 167483243 167483474 + 2 NA Intergenic MIR|SINE|MIR -248768 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 205-197 chr4 12242718 12242876 + 2 NA intron (NR_125910, intron 1 of 3) intron (NR_125910, intron 1 of 3) 19346 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 365-234 chr20 41072440 41072775 + 2 NA intron (NM_003286, intron 3 of 20) intron (NM_003286, intron 3 of 20) 43785 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 552-114 chr2 180930299 180930789 + 2 NA Intergenic Intergenic -49841 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 347-168 chr16 73158382 73158677 + 2 NA Intergenic Intergenic -14082 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 365 chr1 9930269 9930540 + 2 NA exon (NM_032368, exon 8 of 8) exon (NM_032368, exon 8 of 8) -12519 NM_001297778 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 149-67 chr3 40811308 40811427 + 2 NA Intergenic L1MB8|LINE|L1 286407 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 1109-3 chr10 23599628 23600559 + 2 NA Intergenic Intergenic -94634 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 490-250 chr6 133491129 133491416 + 2 NA intron (NM_172103, intron 12 of 18) L1MA3|LINE|L1 249773 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 565-48 chr15 61779674 61780148 + 2 NA Intergenic Intergenic 49993 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 201-109 chr19 56056662 56056826 + 2 NA intron (NM_153447, intron 13 of 14) intron (NM_153447, intron 13 of 14) -9940 NR_110741 101928886 Hs.434652 NR_110741 ENSG00000267522 LINC01864 - long intergenic non-protein coding RNA 1864 ncRNA 614-65 chr2 236656070 236656606 + 2 NA Intergenic Intergenic 86513 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 428-146 chr2 205979336 205979663 + 2 NA Intergenic L2|LINE|L2 106675 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 291-379 chr6 56007227 56007484 + 2 NA Intergenic Intergenic 84307 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 229-62 chr11 43074551 43074742 + 2 NA Intergenic LTR24C|LTR|ERV1 194723 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 363-173 chr17 14539575 14539761 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 235928 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 503-88 chr13 68642529 68642918 + 2 NA Intergenic Intergenic 242602 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 266-24 chr1 197885423 197885607 + 2 NA Intergenic Intergenic -17115 NM_001024594 388722 Hs.61329 NM_001024594 ENSG00000203724 C1orf53 - chromosome 1 open reading frame 53 protein-coding 380-409 chr8 127359882 127360193 + 2 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -40362 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 355-389 chr5 13133404 13133725 + 2 NA Intergenic Intergenic -100678 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 589-91 chr3 94772139 94772510 + 2 NA Intergenic L1MC1|LINE|L1 -165939 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 345-387 chr4 65751142 65751451 + 2 NA Intergenic Intergenic -80801 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 456-84 chr13 113659752 113660151 + 2 NA Intergenic Intergenic -1753 NM_000705 496 Hs.434202 NM_000705 ENSG00000186009 ATP4B ATP6B ATPase H+/K+ transporting subunit beta protein-coding 669-121 chr9 81893695 81894236 + 2 NA Intergenic Intergenic -19472 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 283-340 chr4 175811907 175812163 + 2 NA non-coding (NR_125901, exon 8 of 8) non-coding (NR_125901, exon 8 of 8) 1079 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 335-114 chr12 3956091 3956300 + 2 NA Intergenic L1MEd|LINE|L1 -82747 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 161-44 chr19 57961736 57961889 + 2 NA intron (NM_152474, intron 4 of 5) MER96B|DNA|hAT 12722 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 345-339 chr3 4386324 4386589 + 2 NA intron (NM_001164674, intron 6 of 7) L1MD1|LINE|L1 80813 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 272-393 chr6 103408584 103408747 + 2 NA Intergenic Intergenic 1450881 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 349-117 chr12 18156619 18156841 + 2 NA Intergenic L1MEf|LINE|L1 -66537 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 398-47 chr10 110443093 110443397 + 2 NA Intergenic Intergenic -54662 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 208-246 chr7 46963320 46963451 + 2 NA Intergenic L1MB5|LINE|L1 -266263 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 507-232 chr7 62703163 62703515 + 2 NA Intergenic ALR/Alpha|Satellite|centr 600717 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 273-410 chr7 8891405 8891655 + 2 NA Intergenic L1MD1|LINE|L1 457921 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 375-430 chr8 138350376 138350608 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 146769 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 353-235 chr2 16442179 16442371 + 2 NA Intergenic Intergenic 223559 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 369-429 chr8 135747306 135747578 + 2 NA Intergenic Intergenic 289986 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 347-486 chr7 144535284 144535481 + 2 NA intron (NR_146936, intron 10 of 11) L1PA15|LINE|L1 -125155 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 569-111 chr21 44640332 44640696 + 2 NA intron (NM_144991, intron 1 of 11) L1MB7|LINE|L1 3158 NM_181688 353333 Hs.474001 NM_181688 ENSG00000221859 KRTAP10-10 KAP10.10|KAP18.10|KRTAP18-10|KRTAP18.10 keratin associated protein 10-10 protein-coding 255-115 chr14 77401591 77401803 + 2 NA intron (NM_001113475, intron 5 of 5) AluJr|SINE|Alu 21359 NM_001113475 122945 Hs.97556 NM_138791 ENSG00000165555 NOXRED1 C14orf148 NADP dependent oxidoreductase domain containing 1 protein-coding 326-518 chr8 46507050 46507256 + 2 NA Intergenic ALR/Alpha|Satellite|centr 110490 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 365-325 chr5 92209056 92209250 + 2 NA Intergenic L1MEf|LINE|L1 -825836 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 555-151 chr4 117071425 117071832 + 2 NA Intergenic L2b|LINE|L2 13948 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 528-258 chr8 135121884 135122261 + 2 NA Intergenic AluSx1|SINE|Alu -112059 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 199-37 chr11 81275140 81275300 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -512417 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 306-137 chr14 31969222 31969461 + 2 NA Intergenic Intergenic 24488 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 204-297 chr8 131642361 131642533 + 2 NA Intergenic MIR|SINE|MIR -261646 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 352-25 chr1 199337885 199338170 + 2 NA intron (NR_147896, intron 3 of 3) L1PA13|LINE|L1 189429 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 207-289 chr8 76276589 76276787 + 2 NA Intergenic Intergenic -129966 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 197-65 chr15 57820991 57821177 + 2 NA Intergenic Intergenic 114370 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 218-232 chr3 195009313 195009525 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -85169 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 599-56 chr2 33652173 33652577 + 2 NA Intergenic MIRb|SINE|MIR -53013 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 387-350 chr7 121635455 121635773 + 2 NA Intergenic L2b|LINE|L2 -237547 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 175-57 chr15 100294635 100294747 + 2 NA intron (NM_139057, intron 3 of 21) AluJb|SINE|Alu 47284 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 268-135 chr15 95113348 95113536 + 2 NA Intergenic Intergenic 213658 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 385-385 chr8 117681091 117681349 + 2 NA Intergenic L1ME4a|LINE|L1 160507 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 234-163 chr2 44721397 44721591 + 2 NA intron (NM_024766, intron 7 of 10) intron (NM_024766, intron 7 of 10) 217394 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 272-99 chr13 26436112 26436299 + 2 NA Intergenic L1MA5A|LINE|L1 -121478 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 320-39 chr1 215849510 215849767 + 2 NA intron (NM_206933, intron 44 of 71) intron (NM_206933, intron 44 of 71) -222827 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 383-180 chr2 34770679 34771053 + 2 NA Intergenic Intergenic 93309 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 271-438 chr8 83142269 83142476 + 2 NA Intergenic Intergenic 230268 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 594-28 chr11 79348953 79349527 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 52869 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 306-134 chr14 24568197 24568395 + 2 NA Intergenic L1M2a1|LINE|L1 7954 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 321-38 chr1 237339095 237339332 + 2 NA intron (NM_001035, intron 3 of 104) intron (NM_001035, intron 3 of 104) -131906 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 124-36 chr2 147200327 147200427 + 2 NA Intergenic LTR40a|LTR|ERVL 613320 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 214-360 chrX 82905963 82906102 + 2 NA Intergenic L1MC|LINE|L1 -602258 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 179-50 chr2 151517074 151517240 + 2 NA intron (NM_001271208, intron 157 of 182) intron (NM_001271208, intron 157 of 182) 107255 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 650 chr1 4232832 4233219 + 2 NA Intergenic L1ME3F|LINE|L1 -179026 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 379-183 chr20 15512124 15512464 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 315454 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 198-226 chr7 34771631 34771774 + 2 NA intron (NR_015356, intron 1 of 4) MIR|SINE|MIR -13430 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 421-328 chrX 75763662 75764028 + 2 NA Intergenic L1PA13|LINE|L1 -20766 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 254-363 chr6 168485699 168485896 + 2 NA intron (NM_001166412, intron 1 of 12) L1MB8|LINE|L1 44613 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 479-248 chr8 82520692 82521132 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -391192 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 291-334 chr4 168226854 168227105 + 2 NA intron (NM_017631, intron 33 of 37) MLT1A0|LTR|ERVL-MaLR 91773 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 428-257 chr6 81010380 81010655 + 2 NA Intergenic L1MD1|LINE|L1 742164 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 295-206 chr2 44165289 44165529 + 2 NA Intergenic Intergenic -3394 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 334-93 chr11 91229557 91229789 + 2 NA Intergenic Intergenic -360471 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 396 chr1 5275558 5275939 + 2 NA Intergenic Intergenic 586993 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 407-94 chr15 99293860 99294192 + 2 NA intron (NM_001321677, intron 5 of 8) L1MEf|LINE|L1 36501 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 256-210 chr2 123516088 123516325 + 2 NA Intergenic Intergenic -442725 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 346-528 chr9 92697005 92697208 + 2 NA Intergenic L1PA13|LINE|L1 -26975 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 814-54 chr6 140477269 140477849 + 2 NA Intergenic Intergenic -206255 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 306-228 chr2 33537895 33538096 + 2 NA intron (NM_015376, intron 10 of 16) intron (NM_015376, intron 10 of 16) 24120 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 320-147 chr14 50636802 50637071 + 2 NA intron (NM_021818, intron 4 of 4) intron (NM_021818, intron 4 of 4) 31370 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 216-192 chr20 7824398 7824574 + 2 NA Intergenic L1ME4a|LINE|L1 115972 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 334-359 chr3 108596502 108596730 + 2 NA intron (NM_014648, intron 1 of 32) L2a|LINE|L2 6894 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 342-331 chr3 109435904 109436219 + 2 NA intron (NR_109841, intron 2 of 4) intron (NR_109841, intron 2 of 4) 26071 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 263-343 chr5 164854632 164854822 + 2 NA Intergenic Intergenic 384448 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 468-205 chr3 94291360 94291721 + 2 NA Intergenic Intergenic 228479 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 389-78 chr12 40091710 40092030 + 2 NA intron (NM_052885, intron 1 of 9) MIR|SINE|MIR 14211 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 294-483 chr8 137976142 137976315 + 2 NA intron (NR_161374, intron 2 of 7) L1MEf|LINE|L1 107317 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 219-172 chr2 101133319 101133487 + 2 NA intron (NM_001102426, intron 1 of 19) (TCTCTCC)n|Simple_repeat|Simple_repeat 18044 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 224-202 chr3 76935254 76935408 + 2 NA Intergenic L1MC4a|LINE|L1 -104768 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 222-147 chr18 42927475 42927615 + 2 NA intron (NM_001272077, intron 3 of 5) intron (NM_001272077, intron 3 of 5) 188140 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 263-278 chr4 30767905 30768110 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 47638 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 532-90 chr17 32436642 32437007 + 2 NA Intergenic Intergenic -7686 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 202-279 chrX 70535949 70536110 + 2 NA intron (NM_001003811, intron 29 of 30) intron (NM_001003811, intron 29 of 30) -80035 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 346-64 chr11 23689315 23689582 + 2 NA Intergenic Intergenic -270258 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 233-151 chr19 58218083 58218265 + 2 NA Intergenic Intergenic -10507 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 227-329 chr6 162250863 162251060 + 2 NA intron (NM_004562, intron 3 of 11) L1MC5a|LINE|L1 -476171 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 219-43 chr11 30669373 30669523 + 2 NA Intergenic MER33|DNA|hAT-Charlie -83095 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 285-129 chr14 88395012 88395175 + 2 NA intron (NM_018418, intron 3 of 11) intron (NM_018418, intron 3 of 11) 9436 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 383-57 chr11 79680621 79680833 + 2 NA Intergenic LTR33|LTR|ERVL -239697 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 280-183 chr2 7395267 7395467 + 2 NA Intergenic Intergenic -25894 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 262-139 chr15 26286861 26287114 + 2 NA Intergenic L1MA9|LINE|L1 171174 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 222-371 chr8 110804312 110804467 + 2 NA Intergenic MIR|SINE|MIR 223044 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 276-432 chr7 89403055 89403326 + 2 NA Intergenic L1PA13|LINE|L1 -607453 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 510-61 chr12 73214611 73215067 + 2 NA Intergenic L1MA9|LINE|L1 55649 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 304-413 chr5 42468995 42469181 + 2 NA intron (NM_001242401, intron 1 of 10) intron (NM_001242401, intron 1 of 10) 44107 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 276-293 chr3 59773274 59773515 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -114897 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 251-193 chr2 187680216 187680417 + 2 NA Intergenic L1PA13|LINE|L1 -125811 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 515-259 chr7 145245008 145245362 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -409132 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 347-255 chr2 218942740 218943067 + 2 NA Intergenic Intergenic -12266 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 187-167 chr7 136963952 136964076 + 2 NA intron (NM_001006626, intron 3 of 4) intron (NM_001006626, intron 3 of 4) 60847 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 323-566 chr8 136783971 136784191 + 2 NA intron (NR_147196, intron 2 of 5) L1MA5A|LINE|L1 253283 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 136-17 chr12 13785214 13785337 + 2 NA intron (NM_000834, intron 2 of 12) L2|LINE|L2 195081 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 395-201 chr21 23896392 23896665 + 2 NA Intergenic Intergenic 424849 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 203-153 chr3 111634910 111635095 + 2 NA intron (NR_134917, intron 10 of 14) intron (NR_134917, intron 10 of 14) -39656 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 289-409 chr6 48840720 48840991 + 2 NA Intergenic L1PREC2|LINE|L1 622398 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 351-256 chr20 14185520 14185859 + 2 NA intron (NM_001351663, intron 3 of 17) MIR|SINE|MIR 151923 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 341-447 chr5 135428551 135428774 + 2 NA Intergenic MIRb|SINE|MIR 18686 NM_130848 140947 Hs.152477 NM_130848 ENSG00000251380 DCANP1 C5orf20|DCNP1 dendritic cell associated nuclear protein protein-coding 311-428 chr5 161580516 161580803 + 2 NA Intergenic Intergenic -32255 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 381-82 chr12 14008263 14008637 + 2 NA Intergenic (CATACA)n|Simple_repeat|Simple_repeat -28094 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 368-180 chr16 73498598 73498831 + 2 NA Intergenic LTR16|LTR|ERVL 111909 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 278-117 chr14 63116477 63116656 + 2 NA Intergenic Intergenic -71108 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 463-91 chr14 48780946 48781305 + 2 NA Intergenic MER105|DNA|hAT-Charlie 805255 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 193-38 chr11 68649623 68649783 + 2 NA Intergenic Intergenic -34841 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 454-351 chrX 87830313 87830760 + 2 NA Intergenic L1MA4A|LINE|L1 312734 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 261-226 chr21 32520355 32520485 + 2 NA Intergenic Intergenic 65103 NM_144659 140290 Hs.728804 NM_018277 ENSG00000242220 TCP10L C21orf77|PRED77|TCP10A-1|TCP10A-2 t-complex 10 like protein-coding 611-90 chr20 24412730 24413271 + 2 NA Intergenic Intergenic -56199 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 317-184 chr17 9908567 9908743 + 2 NA Intergenic Intergenic -3384 NM_002903 5957 Hs.80539 NM_002903 ENSG00000109047 RCVRN RCV1 recoverin protein-coding 251-64 chr12 40714670 40714826 + 2 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 22306 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 326-457 chr6 64402643 64402944 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 595957 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 646-114 chr7 20888223 20888660 + 2 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 53010 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 404 chr1 33544471 33544801 + 2 NA intron (NM_052896, intron 56 of 69) L1MA4A|LINE|L1 71991 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 264-115 chr13 88299340 88299490 + 2 NA Intergenic L1MA4|LINE|L1 156548 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 537-78 chr16 17900323 17900735 + 2 NA Intergenic L1ME1|LINE|L1 -429569 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 309-152 chr14 55904121 55904414 + 2 NA Intergenic Intergenic -107593 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 273-424 chr7 53178569 53178792 + 2 NA Intergenic L1ME1|LINE|L1 143047 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 368-466 chr8 122173713 122174044 + 2 NA Intergenic L1ME2|LINE|L1 394766 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 267-359 chr5 166106882 166107034 + 2 NA Intergenic Intergenic 819412 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 361-442 chr8 72988935 72989138 + 2 NA Intergenic HAL1|LINE|L1 -19828 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 337-295 chr2 213275919 213276098 + 2 NA non-coding (NR_144752, exon 2 of 2) non-coding (NR_144752, exon 2 of 2) 8201 NR_144752 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 346-16 chr1 110232565 110232751 + 2 NA 3' UTR (NM_004978, exon 4 of 4) 3' UTR (NM_004978, exon 4 of 4) 22344 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 257-91 chr12 58823421 58823621 + 2 NA Intergenic Intergenic -41805 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 334-185 chr16 5984616 5984808 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -34312 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 378-220 chr2 42137682 42138029 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -31498 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 133-29 chr16 71828273 71828364 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -17658 NM_001137675 342371 Hs.743239 NM_001137675 ENSG00000224470 ATXN1L BOAT|BOAT1 ataxin 1 like protein-coding 478-310 chr9 92440200 92440614 + 2 NA intron (NM_001286969, intron 4 of 6) MER30|DNA|hAT-Charlie -15853 NM_005014 4958 Hs.94070 NM_005014 ENSG00000127083 OMD OSAD|SLRR2C osteomodulin protein-coding 212-306 chr7 68794043 68794250 + 2 NA Intergenic L1MB5|LINE|L1 773893 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 262-306 chr4 37811748 37811922 + 2 NA Intergenic HAL1|LINE|L1 -14851 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 601-51 chr17 12238286 12238830 + 2 NA Intergenic Intergenic 156659 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 260-245 chr20 56138976 56139185 + 2 NA Intergenic Intergenic -109652 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 312-354 chr3 194528627 194528832 + 2 NA Intergenic AluSz|SINE|Alu 41589 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 315-461 chr8 24828550 24828826 + 2 NA Intergenic Intergenic -85073 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 352-160 chr15 46728196 46728480 + 2 NA Intergenic L1M3b|LINE|L1 -455751 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 343-63 chr10 111106677 111106901 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -7502 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 219-386 chrX 84505452 84505618 + 2 NA Intergenic L3|LINE|CR1 -3082 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 302-2 chr1 18371554 18371821 + 2 NA intron (NM_032880, intron 6 of 9) L1ME2|LINE|L1 -109243 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 281-384 chr6 19379077 19379341 + 2 NA Intergenic Intergenic -70612 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 231-155 chr2 34942402 34942555 + 2 NA Intergenic L1ME2|LINE|L1 264921 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 162-114 chr6 115826364 115826509 + 2 NA Intergenic Intergenic -182601 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 347-417 chr5 156336597 156336859 + 2 NA intron (NM_172244, intron 2 of 7) L1ME4b|LINE|L1 9564 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 120-10 chr10 107268645 107268705 + 2 NA Intergenic Intergenic -103969 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 292-249 chr20 22067258 22067475 + 2 NA intron (NR_038394, intron 1 of 3) L2c|LINE|L2 13276 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 200-53 chr12 21484210 21484353 + 2 NA intron (NM_002907, intron 5 of 14) intron (NM_002907, intron 5 of 14) 17354 NM_002907 5965 Hs.235069 NM_002907 ENSG00000004700 RECQL RECQL1|RecQ1 RecQ like helicase protein-coding 239-185 chr2 126184417 126184597 + 2 NA Intergenic Intergenic -66522 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 355-433 chr6 61510484 61510737 + 2 NA Intergenic ALR/Alpha|Satellite|centr -63520 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 279-339 chr5 120613453 120613719 + 2 NA intron (NM_001308088, intron 1 of 3) intron (NM_001308088, intron 1 of 3) 82122 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 342-201 chr18 5709982 5710241 + 2 NA Intergenic Intergenic -38708 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 280-184 chr2 8207976 8208242 + 2 NA intron (NR_152741, intron 9 of 9) L1MDa|LINE|L1 120310 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 835-38 chr22 43680910 43681454 + 2 NA intron (NM_198856, intron 10 of 29) L1MB7|LINE|L1 131123 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 308-106 chr12 33210940 33211150 + 2 NA Intergenic Intergenic 228774 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 301-349 chr5 26026053 26026287 + 2 NA Intergenic Intergenic 835217 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 378-359 chr5_GL000208v1_random 48996 49206 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 413-18 chr1 159477886 159478163 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 38302 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 404-53 chr10 101948222 101948517 + 2 NA intron (NM_024541, intron 22 of 25) AluJo|SINE|Alu -104449 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 420-162 chr2 238479762 238480002 + 2 NA Intergenic L1MEg|LINE|L1 52955 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 539-20 chr10 26300994 26301381 + 2 NA 3' UTR (NM_001134366, exon 16 of 16) 3' UTR (NM_001134366, exon 16 of 16) 84413 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 264-332 chr5 100151163 100151379 + 2 NA Intergenic Intergenic 236983 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 295-401 chr6 40517491 40517734 + 2 NA intron (NM_020737, intron 1 of 2) Tigger19a|DNA|TcMar-Tigger 69752 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 327-370 chr4 104974152 104974344 + 2 NA Intergenic Intergenic -171627 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 412-348 chr9 112977413 112977726 + 2 NA Intergenic HAL1|LINE|L1 34623 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 231-351 chr8 79302670 79302851 + 2 NA Intergenic Intergenic -29428 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 453-270 chr8 5885028 5885432 + 2 NA Intergenic Intergenic 521318 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 223-120 chr17 59503728 59503900 + 2 NA intron (NR_110813, intron 1 of 2) ERV3-16A3_LTR|LTR|ERVL 23043 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 354-338 chr4 89215795 89215983 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 91911 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 356-501 chr9 28146385 28146672 + 2 NA intron (NM_152570, intron 5 of 6) L1M3|LINE|L1 -572662 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 310-497 chr7 132542015 132542203 + 2 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) 34361 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 229-347 chr6 167226587 167226805 + 2 NA Intergenic Intergenic -1604 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 214-254 chr5 8102528 8102705 + 2 NA Intergenic L1MEg|LINE|L1 233468 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 170-77 chr2 195248440 195248561 + 2 NA Intergenic L1MB1|LINE|L1 -408458 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 317-522 chr9 24585479 24585657 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -39671 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 249-150 chr17 12276095 12276289 + 2 NA Intergenic L1MEd|LINE|L1 194293 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 282-174 chr18 7086274 7086423 + 2 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 31449 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 299-166 chr17 11031273 11031561 + 2 NA Intergenic Intergenic -193330 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 469-84 chr14 59483303 59483681 + 2 NA promoter-TSS (NM_001331159) promoter-TSS (NM_001331159) 83 NM_001331159 112849 Hs.729061 NM_144581 ENSG00000126790 L3HYPDH C14orf149 trans-L-3-hydroxyproline dehydratase protein-coding 867-34 chr4 176067473 176068091 + 2 NA intron (NM_181265, intron 1 of 28) intron (NM_181265, intron 1 of 28) 1941 NM_001350727 116966 Hs.532056 NM_170710 ENSG00000150627 WDR17 - WD repeat domain 17 protein-coding 776-39 chr4 108021196 108021675 + 2 NA intron (NM_005327, intron 4 of 7) intron (NM_005327, intron 4 of 7) 16771 NM_001331027 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 617-136 chr8 118156295 118156868 + 2 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -44762 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 379-169 chr2 115120952 115121257 + 2 NA intron (NM_001178037, intron 1 of 25) MER50-int|LTR|ERV1 40239 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 598-55 chr17 67592287 67592652 + 2 NA intron (NM_181671, intron 5 of 9) L1M5|LINE|L1 -120884 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 320-102 chr11 111650119 111650335 + 2 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 47778 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 361-192 chr19 20251765 20252003 + 2 NA Intergenic L1M3a|LINE|L1 84670 NM_052852 90649 Hs.590991 NM_052852 ENSG00000256229 ZNF486 KRBO2 zinc finger protein 486 protein-coding 405-104 chr16 78759620 78759915 + 2 NA intron (NM_001291997, intron 7 of 7) MLT1D|LTR|ERVL-MaLR 660113 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 311-460 chr7 13633413 13633673 + 2 NA Intergenic L1MC3|LINE|L1 352971 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 317-296 chr3 32590879 32591069 + 2 NA Intergenic AluSq2|SINE|Alu -20050 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 331-145 chr14 21825783 21826017 + 2 NA Intergenic Intergenic -154883 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 525-222 chr6 66675923 66676318 + 2 NA Intergenic Intergenic 888241 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 222-14 chr1 174310360 174310549 + 2 NA intron (NM_001366445, intron 11 of 13) L1MB5|LINE|L1 35354 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 955-5 chr11 20968504 20969278 + 2 NA intron (NM_201551, intron 12 of 18) MLT1J2|LTR|ERVL-MaLR 299305 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 306-157 chr14 88253550 88253734 + 2 NA intron (NM_138317, intron 2 of 6) AluSx|SINE|Alu 17269 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 135-23 chr15 53816892 53817019 + 2 NA Intergenic Intergenic -54077 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 236-275 chr5 8369793 8369973 + 2 NA intron (NR_039984, intron 3 of 5) L1MEc|LINE|L1 87681 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 359-418 chr6 12734235 12734574 + 2 NA intron (NM_001322308, intron 2 of 13) MIR|SINE|MIR 15705 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 223-93 chr14 88656755 88656924 + 2 NA intron (NM_183387, intron 27 of 42) intron (NM_183387, intron 27 of 42) 62419 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 521-104 chr18 9052822 9053290 + 2 NA Intergenic Intergenic -49643 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 393-383 chr9 69808853 69809210 + 2 NA Intergenic MER66-int|LTR|ERV1 11708 NR_038833 494558 Hs.130722 NR_038833 ENSG00000225626 C9orf135-DT C9orf135-AS1 C9orf135 divergent transcript ncRNA 231-224 chr3 53423503 53423679 + 2 NA Intergenic MIRc|SINE|MIR -71020 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 424-206 chr4 166982455 166982848 + 2 NA intron (NM_001204355, intron 2 of 8) intron (NM_001204355, intron 2 of 8) 251775 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 338-115 chr11 116655759 116656071 + 2 NA intron (NR_135069, intron 2 of 2) intron (NR_135069, intron 2 of 2) 16493 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 333-139 chr14 28397054 28397329 + 2 NA Intergenic L1M4|LINE|L1 368128 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 292-471 chr9 129346925 129347115 + 2 NA intron (NR_120686, intron 3 of 3) AluSz|SINE|Alu 10097 NR_120685 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 499-25 chr10 33854988 33855426 + 2 NA Intergenic Intergenic -82527 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 152-52 chr2 115617374 115617518 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 273631 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 816-15 chr17 34691762 34692393 + 2 NA Intergenic Intergenic 111328 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 220-211 chr22 37873879 37874052 + 2 NA intron (NM_001242923, intron 6 of 10) Charlie1a|DNA|hAT-Charlie 24546 NM_016091 51386 Hs.446852 NM_016091 ENSG00000100129 EIF3L EIF3EIP|EIF3S11|EIF3S6IP|HSPC021|HSPC025|MSTP005 eukaryotic translation initiation factor 3 subunit L protein-coding 520-246 chr5 126887462 126887824 + 2 NA intron (NM_178450, intron 3 of 4) Charlie4a|DNA|hAT-Charlie 110507 NM_005573 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 398-277 chr5 106908735 106909086 + 2 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 102104 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 541-96 chr18 10447893 10448319 + 2 NA Intergenic Intergenic -6529 NM_153000 147495 Hs.293274 NM_153000 ENSG00000154856 APCDD1 B7323|DRAPC1|FP7019|HHS|HTS|HYPT1 APC down-regulated 1 protein-coding 307-189 chr17 61285245 61285466 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 82349 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 233-169 chr2 75925886 75926065 + 2 NA Intergenic Intergenic -215060 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 374-408 chr8 141243627 141243885 + 2 NA intron (NM_001286646, intron 1 of 7) Tigger2a|DNA|TcMar-Tigger -10811 NR_161376 105375787 Hs.567685 NR_161376 LOC105375787 - uncharacterized LOC105375787 ncRNA 284-400 chr8 49564540 49564803 + 2 NA Intergenic Intergenic -52491 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 280-115 chr14 28396732 28396935 + 2 NA Intergenic L1M4|LINE|L1 368486 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 384-344 chr7 33607171 33607405 + 2 NA intron (NM_001348041, intron 22 of 22) intron (NM_001348041, intron 22 of 22) -297627 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 323-448 chr6 9604776 9605065 + 2 NA Intergenic Intergenic -799582 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 195-42 chr11 115844662 115844824 + 2 NA Intergenic Intergenic -84543 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 184-160 chr7 104448161 104448338 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 119593 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 237-353 chr7 46917757 46917908 + 2 NA Intergenic Intergenic -220710 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 445-28 chr10 82231468 82231834 + 2 NA intron (NR_120666, intron 2 of 3) intron (NR_120666, intron 2 of 3) 1269 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 323-143 chr14 59167968 59168230 + 2 NA Intergenic (AGAA)n|Simple_repeat|Simple_repeat -20568 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 117-45 chr8 118415894 118416005 + 2 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -205052 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 663-34 chr14 40611953 40612436 + 2 NA Intergenic LTR33|LTR|ERVL -342517 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 448-62 chr12 61035880 61036269 + 2 NA Intergenic (CTCTTAT)n|Simple_repeat|Simple_repeat 1156765 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 211-288 chr8 16565424 16565597 + 2 NA Intergenic L1MA7|LINE|L1 -372719 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 310-316 chr3 8082572 8082819 + 2 NA Intergenic L1MA4|LINE|L1 -66388 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 289-153 chr15 77488015 77488239 + 2 NA Intergenic Intergenic -37468 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 459-41 chr10 106897668 106898017 + 2 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 266864 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 343-34 chr1 223446119 223446432 + 2 NA Intergenic L1MB2|LINE|L1 52860 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 299-79 chr11 55381885 55382155 + 2 NA Intergenic L1MA9|LINE|L1 14136 NM_001005275 81328 Hs.554529 NM_001005275 ENSG00000181958 OR4A15 OR11-118 olfactory receptor family 4 subfamily A member 15 protein-coding 281-72 chr11 100174768 100174986 + 2 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -512411 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 519-266 chrX 105858060 105858476 + 2 NA intron (NM_198465, intron 2 of 28) L1ME1|LINE|L1 35729 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 386-25 chr10 10749546 10749772 + 2 NA intron (NM_001326317, intron 2 of 14) L1ME4a|LINE|L1 45255 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 264-282 chr3 158214551 158214758 + 2 NA intron (NM_001271838, intron 4 of 9) L1MEf|LINE|L1 104565 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 593-82 chr2 199345597 199346062 + 2 NA intron (NM_001172509, intron 7 of 10) intron (NM_001172509, intron 7 of 10) 112110 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 352-180 chr17 34725897 34726188 + 2 NA Intergenic MER121|DNA|hAT? 145293 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 224-55 chr11 113899217 113899376 + 2 NA Intergenic Intergenic -5500 NM_006028 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 361-131 chr14 20323295 20323608 + 2 NA promoter-TSS (NR_145735) promoter-TSS (NR_145735) -125 NR_145735 109616976 Hs.742613 NR_145735 ENSG00000222489 SNORA79B - small nucleolar RNA, H/ACA box 79B snoRNA 208-90 chr17 15102820 15103009 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 3273 NR_103559 94151 Hs.98684 NR_103559 CDRT8 - CMT1A duplicated region transcript 8 ncRNA 256-449 chr9 38335756 38335933 + 2 NA Intergenic Intergenic -56858 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 196-154 chr20 50199731 50199877 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -7735 NR_125739 101927559 Hs.442486 NR_125739 ENSG00000277449 CEBPB-AS1 - CEBPB antisense RNA 1 ncRNA 419-43 chr10 118551388 118551790 + 2 NA Intergenic Intergenic 44059 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 314-149 chr13 67487797 67488095 + 2 NA Intergenic L1M5|LINE|L1 115559 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 384-79 chr12 48505837 48506171 + 2 NA Intergenic L1MC1|LINE|L1 -19628 NM_001005203 341568 Hs.524373 NM_001005203 ENSG00000284723 OR8S1 - olfactory receptor family 8 subfamily S member 1 protein-coding 275-311 chr6 61212106 61212300 + 2 NA Intergenic MER4-int|LTR|ERV1 -361927 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 340-432 chr5 18283936 18284265 + 2 NA Intergenic L1MC4a|LINE|L1 476826 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 398-294 chr6 63244318 63244652 + 2 NA Intergenic Intergenic 75492 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 164-102 chr6 165955623 165955759 + 2 NA intron (NR_026860, intron 1 of 1) intron (NR_026860, intron 1 of 1) -31860 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 279-182 chr2 80547390 80547660 + 2 NA intron (NM_001282599, intron 5 of 11) intron (NM_001282599, intron 5 of 11) 234146 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 257-395 chr7 103429469 103429639 + 2 NA intron (NR_135802, intron 2 of 17) intron (NR_135802, intron 2 of 17) 13657 NR_120442 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 344-309 chr3 39630801 39631086 + 2 NA Intergenic Intergenic 128877 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 336-540 chr8 79221101 79221309 + 2 NA Intergenic L1MA1|LINE|L1 -110983 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 339-128 chr12 61757683 61757957 + 2 NA intron (NM_178539, intron 2 of 4) L2a|LINE|L2 435019 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 178-82 chr21 30224904 30225032 + 2 NA Intergenic Intergenic -8871 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 255-455 chr9 28384835 28385023 + 2 NA intron (NM_152570, intron 3 of 6) L1MEh|LINE|L1 334376 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 451-239 chr8 121878475 121878830 + 2 NA Intergenic MIRb|SINE|MIR -237212 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 362-183 chr16 59391587 59391782 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 363507 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 405-210 chr3 127514165 127514517 + 2 NA intron (NR_125397, intron 5 of 6) AluJo|SINE|Alu 23439 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 754-23 chr15 25108329 25108903 + 2 NA TTS (NR_047032) TTS (NR_047032) 348 NR_047032 100873856 NR_047032 ENSG00000252277 SNORD116-30 HBII-85-30 small nucleolar RNA, C/D box 116-30 snoRNA 620-35 chr14 45979543 45980083 + 2 NA Intergenic HERVL-int|LTR|ERVL -84346 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 261-346 chr7 28482672 28482890 + 2 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 47166 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 397-7 chr1 77309308 77309581 + 2 NA intron (NM_012093, intron 5 of 13) intron (NM_012093, intron 5 of 13) 26357 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 356-422 chr6 56179163 56179473 + 2 NA intron (NM_030820, intron 3 of 29) intron (NM_030820, intron 3 of 29) 68262 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 246-141 chr16 51810051 51810250 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 47631 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 518-262 chr6 141884994 141885358 + 2 NA Intergenic L1ME1|LINE|L1 203623 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 380-291 chr4 149663367 149663685 + 2 NA intron (NM_001363507, intron 7 of 13) L1MA6|LINE|L1 152317 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 281-237 chr2 176539814 176540041 + 2 NA Intergenic CR1-12_AMi|LINE|CR1 61125 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 163-111 chr6 144534082 144534184 + 2 NA intron (NM_007124, intron 42 of 73) intron (NM_007124, intron 42 of 73) 128478 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 348-523 chr8 88538390 88538622 + 2 NA Intergenic (CATAT)n|Simple_repeat|Simple_repeat -211023 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 371-179 chr2 114429264 114429513 + 2 NA Intergenic Intergenic -13253 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 258-390 chr8 84326239 84326436 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -89147 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 317-319 chr3 138171961 138172200 + 2 NA intron (NM_016216, intron 2 of 7) intron (NM_016216, intron 2 of 7) 2841 NM_016216 51163 Hs.477700 NM_016216 ENSG00000138231 DBR1 - debranching RNA lariats 1 protein-coding 257-397 chr7 130427767 130427976 + 2 NA intron (NM_001257160, intron 2 of 2) intron (NM_001257160, intron 2 of 2) 13145 NM_001257160 95681 Hs.368315 NM_018718 ENSG00000106477 CEP41 JBTS15|TSGA14 centrosomal protein 41 protein-coding 384-10 chr1 87839159 87839415 + 2 NA Intergenic L1ME4a|LINE|L1 -467632 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 279-388 chr7 34099654 34099887 + 2 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 194231 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 273-6 chr1 42249880 42250050 + 2 NA intron (NM_001198850, intron 4 of 12) intron (NM_001198850, intron 4 of 12) 84990 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 530-162 chr3 61265203 61265611 + 2 NA Intergenic Intergenic -13946 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 331-349 chr3 68340908 68341098 + 2 NA intron (NM_001252216, intron 2 of 4) L2c|LINE|L2 -159634 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 241-30 chr10 10639914 10640140 + 2 NA intron (NM_001326317, intron 1 of 14) L2c|LINE|L2 154887 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 226-382 chr9 79727755 79727913 + 2 NA TTS (NM_001282760) TTS (NM_001282760) -96696 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 465-36 chr10 115544045 115544374 + 2 NA intron (NM_207303, intron 25 of 28) intron (NM_207303, intron 25 of 28) 450844 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 416-103 chr13 31257442 31257817 + 2 NA intron (NM_194318, intron 6 of 14) intron (NM_194318, intron 6 of 14) 57654 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 369-361 chr6 124695222 124695546 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -267161 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 276-409 chr6 113097718 113097874 + 2 NA Intergenic L1MDa|LINE|L1 335651 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 567-138 chr4 151043609 151044010 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -28082 NM_001367550 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 348-324 chr3 143389386 143389691 + 2 NA intron (NM_173653, intron 12 of 15) intron (NM_173653, intron 12 of 15) 47292 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 313-447 chr5 135080874 135081093 + 2 NA intron (NR_161235, intron 2 of 5) HAL1|LINE|L1 -40936 NR_105049 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 Epist C5orf66 antisense RNA 1 ncRNA 473-61 chr12 62089430 62089845 + 2 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 103202 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 543-264 chr9 80573283 80573707 + 2 NA Intergenic L1PB1|LINE|L1 598472 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 400-83 chr14 24952354 24952726 + 2 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 96460 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 250-405 chr7 97377285 97377458 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 260778 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 426-202 chr4 38286742 38287003 + 2 NA Intergenic Intergenic -80042 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 518-128 chr2 50858944 50859406 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -162913 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 209-278 chr6 123764781 123764912 + 2 NA Intergenic Intergenic -39000 NM_001300738 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 290-171 chr17 44334479 44334725 + 2 NA Intergenic Intergenic -9732 NM_001321240 51629 Hs.744880 NM_016016 ENSG00000013306 SLC25A39 CGI-69|CGI69 solute carrier family 25 member 39 protein-coding 233-286 chr5 15760698 15760889 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -145791 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 288-178 chr2 33689066 33689267 + 2 NA Intergenic L1M4c|LINE|L1 -17720 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 274-39 chr10 33699009 33699204 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 73574 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 202-276 chr9 133316419 133316540 + 2 NA Intergenic L1MEi|LINE|L1 19709 NM_001278942 6838 Hs.274430 NM_006753 ENSG00000148296 SURF6 RRP14 surfeit 6 protein-coding 297-396 chr6 40664765 40665011 + 2 NA Intergenic Intergenic -77524 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 259-217 chr2 167751981 167752201 + 2 NA Intergenic Intergenic -66581 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 259-251 chr3 77387371 77387615 + 2 NA intron (NM_001290039, intron 2 of 26) MER41E|LTR|ERV1 289481 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 500-328 chrX 75242518 75242929 + 2 NA intron (NM_001363821, intron 4 of 9) MIR|SINE|MIR -31336 NM_001307944 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 327-215 chr18 55827211 55827397 + 2 NA Intergenic L1MB3|LINE|L1 -45579 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 386-80 chr12 118783656 118783858 + 2 NA Intergenic MER74A|LTR|ERVL -22078 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 320-146 chr14 46816132 46816439 + 2 NA Intergenic Intergenic -164504 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 510-155 chr2 138792990 138793340 + 2 NA Intergenic L1PA11|LINE|L1 -12775 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 357-386 chr6 62366295 62366515 + 2 NA Intergenic L2a|LINE|L2 -80178 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 311-529 chr8 131844975 131845236 + 2 NA Intergenic Intergenic -58988 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 196-121 chr2 41543437 41543622 + 2 NA Intergenic Intergenic -334026 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 495-175 chr4 56169258 56169748 + 2 NA promoter-TSS (NM_020722) promoter-TSS (NM_020722) -692 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 252-248 chr3 4798277 4798470 + 2 NA intron (NM_001168272, intron 52 of 60) L1ME1|LINE|L1 -46783 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 381-419 chrX 102045470 102045721 + 2 NA Intergenic L1PREC2|LINE|L1 -80084 NM_080390 140597 Hs.401835 NM_080390 ENSG00000184905 TCEAL2 MY0876G05|WEX1|my048 transcription elongation factor A like 2 protein-coding 371-150 chr18 47608855 47609112 + 2 NA Intergenic Intergenic 228487 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 325-349 chr3 74545246 74545419 + 2 NA Intergenic Intergenic -24192 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 557-62 chr16 31604625 31605080 + 2 NA Intergenic MER9a3|LTR|ERVK -35328 NR_027011 440359 Hs.650902 NR_027011 YBX3P1 CSDAP1 Y-box binding protein 3 pseudogene 1 pseudo 553-144 chr21 31379619 31380091 + 2 NA intron (NM_001353690, intron 1 of 27) L1MB8|LINE|L1 -35501 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 318-410 chr4 107560090 107560251 + 2 NA Intergenic L1MC4a|LINE|L1 160064 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 391-378 chr9 77078370 77078586 + 2 NA Intergenic L1MC5a|LINE|L1 58823 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 224-50 chr11 82096795 82096977 + 2 NA intron (NR_120571, intron 4 of 7) FordPrefect|DNA|hAT-Tip100 -206050 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 521-271 chr9 84848371 84848819 + 2 NA intron (NM_001018064, intron 12 of 17) MARNA|DNA|TcMar-Mariner 142694 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 317-517 chr8 139695009 139695272 + 2 NA intron (NR_104210, intron 1 of 3) L3b|LINE|CR1 7983 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 702-87 chr6 65559438 65560116 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 20027 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 481-161 chr2 186136642 186137107 + 2 NA Intergenic MamRep605|LTR?|LTR? -50557 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 252-397 chr7 40816463 40816645 + 2 NA intron (NM_024728, intron 14 of 14) L1PA16|LINE|L1 163385 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 476-259 chr8 49113426 49113724 + 2 NA Intergenic Intergenic 41231 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 271-88 chr12 21591032 21591226 + 2 NA intron (NM_021957, intron 1 of 15) L1M2|LINE|L1 13718 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 317-379 chr5 22979913 22980199 + 2 NA Intergenic Intergenic -126712 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 282-356 chr4 156783825 156784017 + 2 NA intron (NM_016205, intron 3 of 5) intron (NM_016205, intron 3 of 5) 187878 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 278-416 chr8 88628497 88628757 + 2 NA Intergenic L1MA4A|LINE|L1 -301144 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 229-364 chr7 68896109 68896282 + 2 NA Intergenic Intergenic 701429 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 545-118 chr2 143600989 143601348 + 2 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -335899 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 344-292 chr21 31472487 31472775 + 2 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 86456 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 314-118 chr12 21041371 21041574 + 2 NA intron (NM_001009562, intron 5 of 12) L1MA1|LINE|L1 25776 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 400-217 chr3 66848743 66849073 + 2 NA Intergenic L1PA3|LINE|L1 -110572 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 338-517 chr7 111148730 111148959 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 57717 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 415-113 chr19 56417183 56417574 + 2 NA intron (NM_001159860, intron 4 of 4) L1ME2|LINE|L1 13046 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 220-167 chr2 71638272 71638461 + 2 NA intron (NM_001130987, intron 41 of 55) L1MB7|LINE|L1 171667 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 250-100 chr12 117034069 117034249 + 2 NA Intergenic Intergenic -46822 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 381-394 chr8 133781876 133782253 + 2 NA Intergenic L1PB1|LINE|L1 -4712 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 510-289 chr9 11083952 11084415 + 2 NA Intergenic Intergenic 470977 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 227-102 chr14 43136513 43136728 + 2 NA Intergenic Intergenic 1370663 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 173-59 chr19 7306334 7306477 + 2 NA Intergenic L1ME1|LINE|L1 -11991 NM_001079817 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 369-381 chr7 15801046 15801281 + 2 NA Intergenic Intergenic 112785 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 355-418 chr5 157208027 157208211 + 2 NA intron (NM_005546, intron 1 of 16) MamTip2|DNA|hAT-Tip100 27223 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 327-290 chr20 1551544 1551766 + 2 NA intron (NM_178460, intron 2 of 3) intron (NM_178460, intron 2 of 3) 6050 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 240-91 chr11 124079444 124079650 + 2 NA Intergenic Intergenic -35857 NM_198315 4013 Hs.152944 NM_014622 ENSG00000110002 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 134-4 chr1 88350591 88350687 + 2 NA Intergenic Intergenic -333505 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 288-218 chr2 213851351 213851579 + 2 NA intron (NR_047660, intron 9 of 14) AluSx1|SINE|Alu 93398 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 658-49 chr16 276799 277260 + 2 NA Intergenic AluSx1|SINE|Alu -1085 NM_001286486 8786 Hs.65756 NM_003834 ENSG00000076344 RGS11 RS11 regulator of G protein signaling 11 protein-coding 225-226 chr3 137702691 137702816 + 2 NA Intergenic L1MA4A|LINE|L1 -61562 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 409-273 chr7 8708095 8708316 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 274596 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 319-540 chr8 112134388 112134560 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -509019 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 210-47 chr11 87295357 87295515 + 2 NA intron (NR_033149, intron 5 of 13) intron (NR_033149, intron 5 of 13) 257502 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 455-286 chr8 129597226 129597659 + 2 NA intron (NR_130917, intron 1 of 3) L1MB7|LINE|L1 -22424 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 193-74 chr16 31824878 31825012 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -16092 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 278-41 chr10 80320603 80320858 + 2 NA Intergenic Intergenic -24015 NR_070308 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 366-124 chr14 44960955 44961245 + 2 NA 5' UTR (NM_001308112, exon 1 of 5) 5' UTR (NM_001308112, exon 1 of 5) 385 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 287-69 chr10 90722258 90722511 + 2 NA Intergenic Kanga1|DNA|TcMar-Tc2 135655 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 284-262 chr3 74107017 74107237 + 2 NA Intergenic L1MD1|LINE|L1 297883 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 752-13 chr12 22393603 22394200 + 2 NA Intergenic Intergenic -59187 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 281-174 chr18 13941522 13941686 + 2 NA Intergenic Intergenic -25897 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 241-276 chr4 103568031 103568249 + 2 NA Intergenic L2a|LINE|L2 143098 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 512-82 chr14 94431940 94432341 + 2 NA Intergenic L1MC1|LINE|L1 20660 NM_001080451 256394 Hs.145890 NM_001080451 ENSG00000186910 SERPINA11 - serpin family A member 11 protein-coding 467-251 chr6 68012274 68012550 + 2 NA Intergenic L2a|LINE|L2 -42939 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 145-34 chr17 19980841 19980973 + 2 NA Intergenic MIR|SINE|MIR -3051 NM_001330152 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 178-92 chr3 153117021 153117154 + 2 NA Intergenic Intergenic -45139 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 165-69 chr21 19378838 19378988 + 2 NA Intergenic Intergenic 520842 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 425-276 chr7 14165614 14165965 + 2 NA intron (NM_001350717, intron 24 of 24) intron (NM_001350717, intron 24 of 24) -174364 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 520-7 chr1 64791213 64791576 + 2 NA intron (NM_001366165, intron 5 of 11) MER21C|LTR|ERVL 46319 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 253-3 chr1 34452049 34452260 + 2 NA Intergenic Intergenic 217540 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 157-20 chr10 65384194 65384307 + 2 NA Intergenic Intergenic -187175 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 901-23 chr4 87284347 87284972 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 15924 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 463-2 chr1 18180407 18180742 + 2 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 72776 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 393-92 chr14 43059970 43060268 + 2 NA Intergenic LTR33|LTR|ERVL 1447164 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 358-320 chr4 11989980 11990309 + 2 NA Intergenic L1M4c|LINE|L1 206966 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 512-268 chr8 77216998 77217429 + 2 NA Intergenic Intergenic -216169 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 660-22 chr12 73178272 73178791 + 2 NA intron (NR_110130, intron 2 of 3) L1M1|LINE|L1 19341 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 344-114 chr12 108002549 108002850 + 2 NA Intergenic L2a|LINE|L2 -98928 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 189-195 chr8 9836375 9836529 + 2 NA Intergenic AluSq2|SINE|Alu 66877 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 270-299 chr5 58393096 58393268 + 2 NA Intergenic Intergenic 66904 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 987-8 chr3 74930591 74931383 + 2 NA Intergenic Intergenic -283489 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 331-129 chr12 128424460 128424776 + 2 NA intron (NM_001136103, intron 2 of 8) L1MB7|LINE|L1 130526 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 429-50 chr11 39194815 39195070 + 2 NA Intergenic MamGypsy2-LTR|LTR|Gypsy 546084 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 347-59 chr10 99317943 99318178 + 2 NA Intergenic L1MA5A|LINE|L1 -11039 NM_001345888 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 225-402 chrX 15005512 15005690 + 2 NA Intergenic L1MA8|LINE|L1 120310 NM_001177475 158747 Hs.744919 NM_152581 ENSG00000130150 MOSPD2 - motile sperm domain containing 2 protein-coding 362-120 chr12 62628586 62628930 + 2 NA Intergenic L2c|LINE|L2 25072 NR_029661 406891 NR_029661 ENSG00000199179 MIRLET7I LET7I|MIRNLET7I|hsa-let-7i|let-7i microRNA let-7i ncRNA 113-55 chrX 85553250 85553328 + 2 NA Intergenic L1MB3|LINE|L1 -173624 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 443-189 chr21 26646071 26646367 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -72933 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 170-131 chr7 112194089 112194197 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 12256 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 350-41 chr10 41878612 41878816 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 489331 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 234-97 chr14 62783918 62784086 + 2 NA intron (NM_139318, intron 9 of 10) (TATAT)n|Simple_repeat|Simple_repeat 261456 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 453-117 chr2 99027213 99027590 + 2 NA intron (NM_001349013, intron 13 of 16) L1MA7|LINE|L1 -91176 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 230-110 chr14 49551852 49552019 + 2 NA Intergenic Intergenic 34445 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 275-117 chr15 17026773 17026982 + 2 NA Intergenic ALR/Alpha|Satellite|centr -3255867 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 243-101 chr12 91839994 91840185 + 2 NA Intergenic MER57A-int|LTR|ERV1 301624 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 221-93 chr15 81378742 81378883 + 2 NA intron (NR_120365, intron 5 of 6) intron (NR_120365, intron 5 of 6) -4599 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 217-271 chr4 104810756 104810894 + 2 NA Intergenic Intergenic -315931 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 416-185 chr2 159683096 159683420 + 2 NA Intergenic FLAM_A|SINE|Alu 29184 NR_110586 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 196-175 chr3 190636252 190636445 + 2 NA TTS (NM_001364880) TTS (NM_001364880) 122263 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 572-146 chr5 161520734 161521175 + 2 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 27170 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 313-409 chr4 146929246 146929445 + 2 NA intron (NR_133922, intron 4 of 13) intron (NR_133922, intron 4 of 13) 16519 NM_001300761 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 496-296 chr8 129541068 129541437 + 2 NA intron (NR_130917, intron 1 of 3) MIR3|SINE|MIR 33766 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 235-17 chr1 152580812 152580984 + 2 NA promoter-TSS (NM_032563) promoter-TSS (NM_032563) -382 NM_032563 84648 Hs.244349 NM_032563 ENSG00000163202 LCE3D LEP16|SPRL6A|SPRL6B late cornified envelope 3D protein-coding 231-280 chr5 46269380 46269553 + 2 NA Intergenic ALR/Alpha|Satellite|centr -573086 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 708-71 chr7 8114371 8114909 + 2 NA intron (NM_001350836, intron 14 of 14) intron (NM_001350836, intron 14 of 14) 145844 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 312-519 chr8 91868379 91868642 + 2 NA Intergenic MER52D|LTR|ERV1 149170 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 223-43 chr10 89772793 89772967 + 2 NA intron (NM_016195, intron 32 of 32) intron (NM_016195, intron 32 of 32) -56613 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 299-9 chr1 41676973 41677221 + 2 NA intron (NM_001127714, intron 1 of 7) MLT1K|LTR|ERVL-MaLR -192414 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 543-178 chr4 38438107 38438563 + 2 NA intron (NR_110951, intron 6 of 7) L1PA8|LINE|L1 71421 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 526-262 chr9 97744463 97744838 + 2 NA intron (NR_147055, intron 5 of 10) L4_C_Mam|LINE|RTE-X -47241 NR_149093 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 384-383 chr8 128362383 128362669 + 2 NA Intergenic L2c|LINE|L2 202153 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 359-358 chr4 52073348 52073570 + 2 NA intron (NM_001346103, intron 2 of 8) MIRc|SINE|MIR 22155 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 400-85 chr14 27574395 27574619 + 2 NA intron (NR_148991, intron 2 of 2) L1PA15|LINE|L1 -38081 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 234-194 chr2 173838929 173839108 + 2 NA Intergenic L1MC3|LINE|L1 124862 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 407-45 chr11 32896721 32897093 + 2 NA intron (NM_001076786, intron 1 of 12) intron (NM_001076786, intron 1 of 12) 4096 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 433-186 chr3 187005865 187006136 + 2 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -15855 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 417-235 chr6 39829472 39829767 + 2 NA intron (NM_015345, intron 1 of 24) intron (NM_015345, intron 1 of 24) 36622 NM_015345 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 181-53 chr17 48854955 48855107 + 2 NA intron (NM_005831, intron 9 of 12) intron (NM_005831, intron 9 of 12) 23996 NM_001261391 10241 Hs.514920 NM_005831 ENSG00000136436 CALCOCO2 NDP52 calcium binding and coiled-coil domain 2 protein-coding 325-521 chr7 144137059 144137232 + 2 NA Intergenic Intergenic 8032 NM_001001659 135941 Hs.534547 NM_001001659 ENSG00000221938 OR2A14 OR2A14P|OR2A6|OST182 olfactory receptor family 2 subfamily A member 14 protein-coding 525-4 chr1 58474891 58475284 + 2 NA Intergenic Intergenic 71639 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 723-72 chr7 80173329 80173801 + 2 NA intron (NM_001256414, intron 1 of 7) intron (NM_001256414, intron 1 of 7) 37781 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 207-203 chr3 178658655 178658839 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 99897 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 445-173 chr3 77424637 77425020 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 326816 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 317-238 chr2 101174496 101174666 + 2 NA Intergenic AluJb|SINE|Alu 22921 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 308-319 chr4 33654650 33654936 + 2 NA Intergenic Intergenic 385100 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 254-29 chr1 235949523 235949730 + 2 NA Intergenic AluSq2|SINE|Alu -65913 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 514-2 chr1 33959340 33959696 + 2 NA intron (NM_052896, intron 3 of 69) MER81|DNA|hAT-Blackjack 90562 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 612-89 chr3 57504298 57504871 + 2 NA intron (NM_198564, intron 8 of 11) intron (NM_198564, intron 8 of 11) 39760 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 1084-13 chr3 94683430 94684295 + 2 NA Intergenic Intergenic -254401 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 378-306 chr4 57148835 57149188 + 2 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -38626 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 530-37 chr10 121788043 121788515 + 2 NA intron (NM_001001976, intron 11 of 11) intron (NM_001001976, intron 11 of 11) 139752 NM_007041 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 615-107 chr5 37994059 37994600 + 2 NA Intergenic Intergenic -31368 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 365-244 chr22 25501971 25502298 + 2 NA Intergenic L1MDa|LINE|L1 46488 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 149-76 chr4 58454352 58454462 + 2 NA Intergenic LTR1B|LTR|ERV1 81921 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 562-209 chr7 111394747 111395249 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 167293 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 370-387 chr6 22684322 22684580 + 2 NA intron (NR_134614, intron 1 of 2) MLT2C1|LTR|ERVL 33473 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 348-428 chr5 131004280 131004580 + 2 NA Intergenic L1MA3|LINE|L1 160826 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 334-7 chr1 49324447 49324722 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) 67173 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 707-40 chr16 90054677 90055041 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -7076 NR_027336 100130015 Hs.431792 NR_027335 ENSG00000222019 URAHP URAH urate (hydroxyiso-) hydrolase, pseudogene pseudo 193-40 chr11 84346318 84346479 + 2 NA intron (NM_001142699, intron 7 of 27) L2c|LINE|L2 -29059 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 287-161 chr17 34532165 34532382 + 2 NA Intergenic Intergenic 47096 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 362-11 chr1 55706524 55706878 + 2 NA Intergenic MIR3|SINE|MIR 238262 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 209-19 chr1 182160923 182161040 + 2 NA Intergenic L1MB3|LINE|L1 -99269 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 328-258 chr2 54061009 54061190 + 2 NA intron (NM_001320587, intron 3 of 5) AluJo|SINE|Alu -54516 NM_001320589 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 307-146 chr14 72035081 72035287 + 2 NA intron (NM_001370288, intron 2 of 16) L1MB2|LINE|L1 101657 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 219-44 chr11 34780589 34780782 + 2 NA Intergenic L1ME3A|LINE|L1 -135445 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 268-52 chr10 71531776 71531987 + 2 NA intron (NM_052836, intron 6 of 12) intron (NM_052836, intron 6 of 12) -19961 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 255-328 chr5 56294095 56294283 + 2 NA Intergenic Intergenic -60859 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 312-9 chr1 58019784 58019962 + 2 NA intron (NM_001353980, intron 1 of 5) L3|LINE|CR1 159292 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 352-420 chr5 77731032 77731225 + 2 NA intron (NM_004607, intron 1 of 3) L1ME3G|LINE|L1 45211 NM_001297738 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 249-438 chr8 141703150 141703322 + 2 NA Intergenic Intergenic 83077 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 247-444 chrX 79493699 79493862 + 2 NA Intergenic L1M1|LINE|L1 -126228 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 443-16 chr1 114617010 114617309 + 2 NA intron (NM_001256404, intron 8 of 20) THE1A|LTR|ERVL-MaLR -35544 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 308-418 chr6 57189050 57189286 + 2 NA non-coding (NR_103822, exon 4 of 4) non-coding (NR_103822, exon 4 of 4) 16842 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 487-132 chr2 12327315 12327788 + 2 NA intron (NR_110196, intron 4 of 5) AluSx1|SINE|Alu 128421 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 385-290 chr5 13798336 13798686 + 2 NA intron (NM_001369, intron 47 of 78) intron (NM_001369, intron 47 of 78) 145969 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 285-118 chr14 52355577 52355763 + 2 NA Intergenic LTR16C|LTR|ERVL 41358 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 348-482 chr7 10869239 10869445 + 2 NA Intergenic Intergenic 70811 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 224-357 chrX 42888263 42888462 + 2 NA Intergenic Intergenic -110199 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 347-440 chr6 129186281 129186477 + 2 NA intron (NM_000426, intron 10 of 64) intron (NM_000426, intron 10 of 64) 303238 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 338-48 chr10 19214397 19214656 + 2 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 165725 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 379-269 chr5 89162002 89162201 + 2 NA intron (NR_136219, intron 6 of 9) L1PA7|LINE|L1 -257996 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 230-45 chr10 81827741 81827935 + 2 NA Intergenic Intergenic -47356 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 252-35 chr10 37903211 37903370 + 2 NA Intergenic Intergenic -45187 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 362-172 chr15 93717031 93717321 + 2 NA Intergenic Intergenic -139384 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 531-232 chr7 97137377 97137856 + 2 NA intron (NM_020186, intron 1 of 1) intron (NM_020186, intron 1 of 1) 21023 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 317-510 chr8 135018335 135018555 + 2 NA Intergenic L2c|LINE|L2 168510 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 315-196 chr18 1619289 1619515 + 2 NA Intergenic MER41B|LTR|ERV1 -259773 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 416-327 chr8 46059383 46059684 + 2 NA Intergenic ALR/Alpha|Satellite|centr 558110 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 320-394 chr4 75432107 75432341 + 2 NA Intergenic (TATTAT)n|Simple_repeat|Simple_repeat 77072 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 195-6 chr1 73441822 73441956 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 135719 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 357-383 chr6 54212435 54212640 + 2 NA intron (NM_138569, intron 10 of 12) (GT)n|Simple_repeat|Simple_repeat -95904 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 385-216 chr20 52720163 52720512 + 2 NA Intergenic Intergenic 99499 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 244-32 chr10 43767892 43768054 + 2 NA Intergenic L1MC5a|LINE|L1 10852 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 211-76 chr13 69384515 69384712 + 2 NA Intergenic Intergenic 162267 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 347-310 chr3 88350470 88350724 + 2 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 12141 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 215-71 chr13 75377523 75377711 + 2 NA intron (NM_001286658, intron 1 of 19) intron (NM_001286658, intron 1 of 19) 104551 NM_001286658 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 369-226 chr2 192869651 192869854 + 2 NA Intergenic L1ME3A|LINE|L1 119907 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 220-383 chr8 134379656 134379816 + 2 NA Intergenic MIRb|SINE|MIR -218335 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 314-402 chr3 194830927 194831162 + 2 NA Intergenic Intergenic -62335 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 261-301 chr5 7943224 7943441 + 2 NA Intergenic Intergenic 74184 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 348-122 chr13 73550416 73550628 + 2 NA Intergenic AluSx4|SINE|Alu -13722 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 674-82 chr5 171588098 171588520 + 2 NA Intergenic Intergenic 168662 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 533-55 chr14 72586948 72587240 + 2 NA Intergenic Intergenic 70274 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 461-230 chr6 48135388 48135798 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -66904 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 420-25 chr1 227561936 227562225 + 2 NA Intergenic Intergenic -1476 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 348-331 chr3 168560493 168560750 + 2 NA intron (NR_021485, intron 4 of 15) MER57A-int|LTR|ERV1 8767 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 223-144 chr2 19683355 19683535 + 2 NA Intergenic Intergenic -185409 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 345-16 chr1 112046791 112047092 + 2 NA Intergenic Intergenic 56405 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 859-12 chr14 82076358 82076884 + 2 NA Intergenic Intergenic -333483 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 256-207 chr2 115304170 115304347 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -4979 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 432-136 chr2 123933792 123934069 + 2 NA Intergenic L1PB4|LINE|L1 91244 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 200-162 chr21 18093166 18093323 + 2 NA intron (NM_001204178, intron 2 of 5) L1MA2|LINE|L1 -151589 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 341-290 chr20 19532765 19532969 + 2 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -248271 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 296-272 chr20 62714731 62714944 + 2 NA intron (NM_002531, intron 1 of 3) intron (NM_002531, intron 1 of 3) 6001 NM_002531 4923 Hs.590869 NM_002531 ENSG00000101188 NTSR1 NTR neurotensin receptor 1 protein-coding 312-136 chr14 36822006 36822297 + 2 NA intron (NM_001171170, intron 2 of 10) intron (NM_001171170, intron 2 of 10) 130240 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 414-183 chr20 23485996 23486389 + 2 NA Intergenic L1PA14|LINE|L1 -4925 NM_001281730 10047 Hs.121602 NM_005492 ENSG00000125815 CST8 CRES|CTES5 cystatin 8 protein-coding 381-215 chr2 198500084 198500393 + 2 NA Intergenic Intergenic -125141 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 301-50 chr10 105499959 105500193 + 2 NA Intergenic Intergenic 320257 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 373-209 chr2 140976772 140977070 + 2 NA intron (NM_018557, intron 18 of 90) intron (NM_018557, intron 18 of 90) -390236 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 446-26 chr1 216276858 216277213 + 2 NA intron (NM_206933, intron 11 of 71) (CTAT)n|Simple_repeat|Simple_repeat 146361 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 553-83 chr17 19641226 19641737 + 2 NA Intergenic L1MC|LINE|L1 -6669 NM_001369137 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 340-236 chr2 16480911 16481161 + 2 NA Intergenic Intergenic 184798 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 299-26 chr1 177842261 177842504 + 2 NA Intergenic Intergenic 127540 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 258-55 chr10 69298801 69298964 + 2 NA intron (NM_033497, intron 4 of 20) Charlie7|DNA|hAT-Charlie -16972 NM_033496 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 219-170 chr2 84847749 84847900 + 2 NA intron (NM_001307978, intron 2 of 4) MLT1C|LTR|ERVL-MaLR 33260 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 368-473 chr8 138261347 138261627 + 2 NA intron (NM_015912, intron 4 of 19) L4_A_Mam|LINE|RTE-X -177942 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 231-144 chr19 2381102 2381224 + 2 NA Intergenic L2c|LINE|L2 -8608 NM_182973 360200 Hs.465560 NM_182973 ENSG00000178297 TMPRSS9 - transmembrane serine protease 9 protein-coding 309-548 chr8 87029144 87029380 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 162847 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 324-575 chr9 124148789 124149034 + 2 NA Intergenic L1ME4a|LINE|L1 -108695 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 260-113 chr13 34001905 34002117 + 2 NA Intergenic Intergenic 183862 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 311-232 chr2 3942337 3942528 + 2 NA Intergenic Intergenic 31600 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 382-118 chr15 27295146 27295349 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -133928 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 347-354 chr4 109169599 109169813 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 132952 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 246-243 chr21 46584454 46584648 + 2 NA Intergenic L1M4b|LINE|L1 20531 NM_006272 6285 Hs.422181 NM_006272 ENSG00000160307 S100B NEF|S100|S100-B|S100beta S100 calcium binding protein B protein-coding 250-170 chr17 74330032 74330234 + 2 NA intron (NM_153209, intron 2 of 19) intron (NM_153209, intron 2 of 19) 3907 NM_153209 124602 Hs.372773 NM_153209 ENSG00000196169 KIF19 KIF19A kinesin family member 19 protein-coding 362-147 chr14 55863798 55864089 + 2 NA Intergenic L1PREC2|LINE|L1 -67269 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 481-39 chr10 73345991 73346281 + 2 NA intron (NM_001350934, intron 3 of 25) AluSx4|SINE|Alu 12618 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 181-127 chr5 107958362 107958464 + 2 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -287476 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 387-156 chr2 7587687 7588021 + 2 NA Intergenic Intergenic 166593 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 378-96 chr12 3056817 3057134 + 2 NA Intergenic Intergenic -20380 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 186-138 chr6 51866842 51867022 + 2 NA intron (NM_138694, intron 48 of 66) intron (NM_138694, intron 48 of 66) 220681 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 543-62 chr12 63042195 63042555 + 2 NA Intergenic MIRb|SINE|MIR -107225 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 293-106 chr13 85630080 85630283 + 2 NA Intergenic Intergenic 169238 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 375-340 chr5 152177864 152178190 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 219129 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 437-190 chr4 46767339 46767613 + 2 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 141769 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 354-278 chr22 49220082 49220305 + 2 NA Intergenic L1MCa|LINE|L1 323273 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 401-250 chr5 17272465 17272706 + 2 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 54954 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 267-392 chr7 49456173 49456423 + 2 NA Intergenic L3|LINE|CR1 -317340 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 206-59 chr12 92285386 92285545 + 2 NA Intergenic MIR|SINE|MIR -136066 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 246-356 chr6 135800743 135800935 + 2 NA Intergenic MLT2F|LTR|ERVL -50862 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 499-29 chr10 84222742 84223070 + 2 NA intron (NM_001284223, intron 2 of 3) MIRb|SINE|MIR 2638 NM_001017924 340745 Hs.450425 NM_001017924 ENSG00000204033 LRIT2 LRRC22 leucine rich repeat, Ig-like and transmembrane domains 2 protein-coding 308-103 chr12 22790780 22790956 + 2 NA Intergenic L1M5|LINE|L1 165697 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 282-33 chr10 11230011 11230284 + 2 NA intron (NM_001025076, intron 3 of 13) MER5A1|DNA|hAT-Charlie 65117 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 407-73 chr13 57774554 57774818 + 2 NA Intergenic L1MA5|LINE|L1 142942 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 600-17 chr10 126802904 126803274 + 2 NA Intergenic Intergenic -102320 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 266-304 chr4 121967462 121967634 + 2 NA Intergenic L1ME4a|LINE|L1 -15488 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 613-147 chr9 85171028 85171468 + 2 NA Intergenic LTR37A|LTR|ERV1 465347 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 592-67 chr18 11296263 11296659 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -147699 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 656-70 chr20 13025052 13025521 + 2 NA intron (NM_001349945, intron 2 of 12) MIRb|SINE|MIR 16314 NM_001349945 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 310-474 chr7 28445120 28445393 + 2 NA intron (NM_004904, intron 1 of 10) THE1B|LTR|ERVL-MaLR 9641 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 282-415 chr6 146461280 146461558 + 2 NA Intergenic L1MA4|LINE|L1 -82414 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 286-488 chrX 87867568 87867723 + 2 NA Intergenic MER74C|LTR|ERVL 349843 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 352-255 chr2 160098782 160098976 + 2 NA TTS (NM_001282389) TTS (NM_001282389) -36264 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 114 chr1 190978451 190978511 + 2 NA Intergenic Intergenic 250017 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 408-134 chr16 87092041 87092357 + 2 NA Intergenic MIR|SINE|MIR 34415 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 591-144 chr5 178408040 178408437 + 2 NA intron (NM_173465, intron 2 of 28) L1MDa|LINE|L1 -175416 NR_103510 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 176-120 chr6 40100782 40100931 + 2 NA Intergenic Intergenic -166394 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 318-424 chr4 178078696 178078892 + 2 NA Intergenic Intergenic -170858 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 331-295 chr2 175797350 175797653 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 204766 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 367-442 chr8 35363820 35364017 + 2 NA intron (NM_080872, intron 1 of 16) AluSz6|SINE|Alu 128443 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 367-100 chr12 113508563 113508900 + 2 NA Intergenic Intergenic 36728 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 674-108 chr9 30842009 30842527 + 2 NA Intergenic L1M4a2|LINE|L1 -433814 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 519-73 chr16 50804435 50804899 + 2 NA Intergenic Intergenic -2005 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 547-22 chr10 76275841 76276345 + 2 NA intron (NM_001305581, intron 5 of 6) L1MEf|LINE|L1 493332 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 384-88 chr12 93871023 93871391 + 2 NA intron (NR_135147, intron 3 of 3) intron (NR_135147, intron 3 of 3) 72399 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 214-85 chr12 119004505 119004659 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 23041 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 559-61 chr16 13349644 13350037 + 2 NA Intergenic MamRep1527|LTR|LTR 448242 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 209-258 chr5 123420391 123420576 + 2 NA intron (NM_001166226, intron 1 of 19) intron (NM_001166226, intron 1 of 19) 3109 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 516-123 chr2 66994277 66994741 + 2 NA Intergenic L1ME2|LINE|L1 -72019 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 526-171 chr3 80495118 80495576 + 2 NA Intergenic Intergenic -269550 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 331-431 chr5 112596343 112596619 + 2 NA Intergenic LTR102_Mam|LTR|ERVL -31955 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 285-368 chr6 100483796 100484015 + 2 NA Intergenic Intergenic -20230 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 568-29 chr11 90767395 90767737 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 101636 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 357-378 chr6 40055774 40056051 + 2 NA Intergenic L1PA12|LINE|L1 -121450 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 313-465 chr6 42457555 42457822 + 2 NA Intergenic AluJb|SINE|Alu -5464 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 307-215 chr19 33934129 33934329 + 2 NA Intergenic Intergenic 137359 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 345-314 chr21 15136991 15137276 + 2 NA Intergenic AluJb|SINE|Alu -72133 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 509-42 chr11 55486073 55486546 + 2 NA Intergenic L1MC4|LINE|L1 -67960 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 271-32 chr1 232829946 232830190 + 2 NA Intergenic L2b|LINE|L2 25176 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 412-156 chr2 58547128 58547399 + 2 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 26510 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 356-240 chr2 60009367 60009595 + 2 NA Intergenic Intergenic 373555 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 358-449 chr7 86226151 86226494 + 2 NA Intergenic MER52A|LTR|ERV1 -417587 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 282-107 chr13 26562999 26563217 + 2 NA intron (NM_006646, intron 1 of 9) intron (NM_006646, intron 1 of 9) 5405 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 251-319 chr5 145464515 145464728 + 2 NA Intergenic Intergenic 370721 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 127-42 chr2 14795133 14795219 + 2 NA Intergenic L1ME1|LINE|L1 162459 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 341-508 chr7 132091594 132091836 + 2 NA Intergenic Intergenic -169146 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 346-521 chr9 35502375 35502614 + 2 NA intron (NM_001330740, intron 1 of 10) intron (NM_001330740, intron 1 of 10) 12383 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 234-290 chr4 150740244 150740375 + 2 NA intron (NM_001367550, intron 35 of 56) L1ME3A|LINE|L1 158158 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 322-419 chr5 35686313 35686563 + 2 NA intron (NM_024867, intron 10 of 36) intron (NM_024867, intron 10 of 36) 68575 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 306-276 chr20 19000970 19001226 + 2 NA Intergenic Intergenic -170895 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 252-165 chr18 23178698 23178872 + 2 NA intron (NM_138375, intron 1 of 9) intron (NM_138375, intron 1 of 9) 22960 NM_138375 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 896-36 chr8 57793221 57794014 + 2 NA Intergenic Intergenic 47468 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 391-97 chr14 36809199 36809466 + 2 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 143059 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 587-67 chr19 28213938 28214432 + 2 NA Intergenic MER113|DNA|hAT-Charlie -392503 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 387-327 chr7 1791906 1792265 + 2 NA Intergenic AluJo|SINE|Alu -49775 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 229-405 chr8 137495652 137495814 + 2 NA Intergenic Intergenic -82145 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 315-375 chr5 41100349 41100552 + 2 NA Intergenic L1M5|LINE|L1 -29108 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 462-213 chr4 116124997 116125369 + 2 NA Intergenic HAL1b|LINE|L1 -174542 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 271-161 chr17 51434619 51434772 + 2 NA promoter-TSS (NR_146897) promoter-TSS (NR_146897) -732 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 114-38 chr3 54428845 54428952 + 2 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 210959 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 399-254 chr5 92405943 92406225 + 2 NA Intergenic Intergenic -1022767 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 151-8 chr1 222750935 222751032 + 2 NA TTS (NR_136691) TTS (NR_136691) 11299 NM_001324080 400823 Hs.697608 NM_207468 ENSG00000197520 FAM177B - family with sequence similarity 177 member B protein-coding 350-545 chr8 134878470 134878708 + 2 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 28654 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 672-35 chr16 34620106 34620584 + 2 NA Intergenic ALR/Alpha|Satellite|centr -238865 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 267-428 chr8 109278586 109278804 + 2 NA intron (NM_032869, intron 6 of 9) L1ME2|LINE|L1 51238 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 261-309 chr5 58236867 58237033 + 2 NA Intergenic Intergenic -114609 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 301-298 chr3 185333947 185334240 + 2 NA intron (NM_001242317, intron 2 of 12) L1M5|LINE|L1 -29043 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 591-10 chr10 29777067 29777593 + 2 NA Intergenic Intergenic -40394 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 359-307 chr3 9297997 9298181 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 48333 NR_146969 101927440 NR_146969 ENSG00000235830 SRGAP3-AS4 - SRGAP3 antisense RNA 4 ncRNA 473-202 chr4 176822549 176822936 + 2 NA Intergenic Intergenic -29820 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 222-230 chr3 37845867 37846055 + 2 NA intron (NR_110531, intron 1 of 3) L1MC4a|LINE|L1 15819 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 270-236 chr3 82745998 82746174 + 2 NA Intergenic L1PA15|LINE|L1 759944 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 406-282 chr7 100962493 100962782 + 2 NA intron (NM_005960, intron 3 of 11) (TTTC)n|Simple_repeat|Simple_repeat -6986 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 279-259 chr3 80466348 80466539 + 2 NA Intergenic L1P4|LINE|L1 -298454 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 354-454 chr8 49816142 49816343 + 2 NA Intergenic Intergenic -93554 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 317-426 chr6 117424075 117424286 + 2 NA intron (NM_002944, intron 1 of 42) L1ME4a|LINE|L1 1675 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 268-8 chr1 78743999 78744239 + 2 NA Intergenic Intergenic 94288 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 384-133 chr16 26153611 26153951 + 2 NA Intergenic Intergenic 128544 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 616-110 chr3 118287989 118288320 + 2 NA Intergenic L1ME1|LINE|L1 -353614 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 318-460 chr5 145135113 145135423 + 2 NA Intergenic Intergenic 700074 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 254-429 chr8 133925506 133925707 + 2 NA Intergenic Intergenic 39110 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 603-161 chr8 49551631 49552153 + 2 NA Intergenic L1MEc|LINE|L1 -39712 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 188-65 chr15 95027516 95027645 + 2 NA Intergenic Intergenic 172217 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 383-318 chr5 61264973 61265228 + 2 NA promoter-TSS (NR_146624) promoter-TSS (NR_146624) -171 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 218-69 chr12 58459918 58460096 + 2 NA Intergenic Intergenic -131695 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 340-537 chr8 88643391 88643587 + 2 NA Intergenic Intergenic -316006 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 141-20 chr12 64277368 64277484 + 2 NA intron (NM_001099676, intron 7 of 10) intron (NM_001099676, intron 7 of 10) -55130 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 361-303 chr3 129775815 129776005 + 2 NA intron (NM_001349271, intron 2 of 4) L2a|LINE|L2 18702 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 304-152 chr14 85591658 85591854 + 2 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 58407 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 356-262 chr2 129269805 129270114 + 2 NA intron (NR_122042, intron 1 of 3) L1MA9|LINE|L1 3932 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 268-101 chr13 45594793 45594948 + 2 NA intron (NM_182542, intron 3 of 14) intron (NM_182542, intron 3 of 14) 20869 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 359-217 chr2 6399710 6400034 + 2 NA Intergenic L1M7|LINE|L1 -24450 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 402-86 chr14 67930584 67930872 + 2 NA intron (NM_133509, intron 7 of 10) L1M2|LINE|L1 107136 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 420-76 chr14 43086037 43086372 + 2 NA Intergenic Intergenic 1421079 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 292-176 chr17 77652430 77652690 + 2 NA Intergenic L1ME1|LINE|L1 75999 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 450-88 chr14 78522176 78522515 + 2 NA intron (NM_004796, intron 1 of 16) MIRb|SINE|MIR 118626 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 619-47 chr14 66239232 66239814 + 2 NA Intergenic Intergenic -246848 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 225-161 chr2 102384636 102384807 + 2 NA intron (NM_003855, intron 6 of 10) intron (NM_003855, intron 6 of 10) 28438 NM_003855 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 908-45 chr8 136749394 136750008 + 2 NA intron (NR_147196, intron 2 of 5) L1M3b|LINE|L1 218903 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 305-133 chr12 127994815 127995054 + 2 NA Intergenic Intergenic -11043 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 332-42 chr1 239448378 239448569 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 61905 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 450-255 chr6 44796730 44797023 + 2 NA Intergenic L1MC5a|LINE|L1 -244995 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 345-331 chr21 45023626 45023953 + 2 NA Intergenic Intergenic -19062 NR_024089 378825 Hs.534828 NR_024089 ENSG00000275874 PICSAR C21orf113|LINC00162|NCRNA00162|NLC1-C|NLC1C|PRED74 P38 inhibited cutaneous squamous cell carcinoma associated lincRNA ncRNA 143-14 chr11 111148882 111148986 + 2 NA Intergenic Intergenic -51616 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 218-40 chr11 4841098 4841234 + 2 NA Intergenic L1MA1|LINE|L1 8042 NM_001004758 119692 Hs.553561 NM_001004758 ENSG00000176922 OR51S1 OR11-24 olfactory receptor family 51 subfamily S member 1 protein-coding 569 chr1 27833846 27834292 + 2 NA promoter-TSS (NR_002997) promoter-TSS (NR_002997) -332 NR_002997 677774 Hs.689694 NR_002997 ENSG00000252947 SCARNA1 ACA35 small Cajal body-specific RNA 1 ncRNA 369-234 chr2 235436228 235436488 + 2 NA Intergenic Intergenic -57685 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 237-62 chr11 112753696 112753878 + 2 NA Intergenic L2b|LINE|L2 -197985 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 297-105 chr12 26869736 26869956 + 2 NA Intergenic Intergenic -36652 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 334-332 chr3 17750479 17750769 + 2 NA Intergenic MIR|SINE|MIR 7680 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 414-319 chr8 46323647 46324044 + 2 NA Intergenic ALR/Alpha|Satellite|centr 293798 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 211-193 chr3 105304672 105304852 + 2 NA Intergenic L1PA7|LINE|L1 -61951 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 332-271 chr2 186155328 186155584 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -69139 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 254-150 chr17 12344175 12344421 + 2 NA Intergenic AluSz|SINE|Alu -205670 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 336-4 chr1 14063250 14063533 + 2 NA Intergenic MER113|DNA|hAT-Charlie 313976 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 294-364 chr5 19402581 19402772 + 2 NA Intergenic Intergenic 483596 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 281-470 chrX 69792621 69792824 + 2 NA intron (NM_001005613, intron 2 of 2) L1PB2|LINE|L1 176609 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 304-210 chr18 44993752 44994031 + 2 NA intron (NM_015559, intron 4 of 5) L1ME3E|LINE|L1 -23725 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 553-67 chr14 83137385 83137875 + 2 NA Intergenic Intergenic 494998 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 251-113 chr15 79414693 79414936 + 2 NA TTS (NM_001330376) TTS (NM_001330376) -17702 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 309-184 chr15 97223445 97223654 + 2 NA Intergenic L1MEf|LINE|L1 298262 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 300-9 chr1 73739053 73739284 + 2 NA TTS (NR_146300) TTS (NR_146300) 64489 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 544-53 chr12 9084535 9084905 + 2 NA intron (NM_000014, intron 22 of 35) L1MA7|LINE|L1 19543 NR_137425 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 217-318 chr5 174114562 174114738 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 68944 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 460-157 chr2 190101991 190102324 + 2 NA Intergenic L1PA15-16|LINE|L1 -35620 NM_001042521 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 396-22 chr1 115917308 115917598 + 2 NA Intergenic Intergenic -1923 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 583-103 chr21 23186943 23187294 + 2 NA Intergenic L1M1|LINE|L1 107834 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 345-471 chr6 125277456 125277772 + 2 NA intron (NM_016063, intron 4 of 5) intron (NM_016063, intron 4 of 5) 24353 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 340-386 chr4 10881399 10881691 + 2 NA Intergenic MIRb|SINE|MIR -196777 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 220-150 chr2 4799150 4799328 + 2 NA Intergenic L1ME1|LINE|L1 -143017 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 210-2 chr1 41337858 41338012 + 2 NA Intergenic AluSz6|SINE|Alu -23499 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 242-432 chr9 36002097 36002284 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -34723 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 260-10 chr1 97648536 97648760 + 2 NA intron (NM_000110, intron 8 of 22) intron (NM_000110, intron 8 of 22) -148273 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 318-324 chr20 61456448 61456631 + 2 NA intron (NM_001794, intron 2 of 15) MER20|DNA|hAT-Charlie -42882 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 252-43 chr10 56049316 56049537 + 2 NA Intergenic L1P4|LINE|L1 311833 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 302-89 chr11 109209007 109209162 + 2 NA Intergenic L1MD2|LINE|L1 -213106 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 360-254 chr2 213837752 213838085 + 2 NA intron (NR_047660, intron 9 of 14) MLT1D|LTR|ERVL-MaLR 79851 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 278-86 chr13 26045318 26045594 + 2 NA 3' UTR (NM_001007538, exon 2 of 2) 3' UTR (NM_001007538, exon 2 of 2) 5604 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 272-11 chr1 97202768 97202974 + 2 NA intron (NM_000110, intron 19 of 22) intron (NM_000110, intron 19 of 22) 106948 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 302-114 chr13 57966507 57966719 + 2 NA Intergenic Intergenic -199214 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 339-258 chr2 66561314 66561607 + 2 NA intron (NM_002398, intron 9 of 12) intron (NM_002398, intron 9 of 12) -12570 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 326-590 chrX 114765417 114765595 + 2 NA intron (NM_001256760, intron 5 of 6) intron (NM_001256760, intron 5 of 6) 2322 NR_031732 100302222 NR_031732 ENSG00000222715 MIR1911 MIRN1911|hsa-mir-1911|mir-1911 microRNA 1911 ncRNA 539-21 chr10 41733522 41733918 + 2 NA Intergenic ALR/Alpha|Satellite|centr 634325 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 388-37 chr10 15749443 15749791 + 2 NA Intergenic Intergenic -29282 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 310-439 chr6 1322173 1322405 + 2 NA Intergenic Intergenic 10191 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 354-305 chr3 110887804 110888067 + 2 NA Intergenic Intergenic 182024 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 356-241 chr2 64603575 64603861 + 2 NA Intergenic L1MC5a|LINE|L1 -3594 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 223-293 chr5 156370430 156370622 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 43362 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 332-482 chr7 42364375 42364548 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -127252 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 316-548 chr8 83189461 83189653 + 2 NA Intergenic Intergenic -214201 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 263-16 chr1 110766196 110766440 + 2 NA Intergenic Intergenic -91378 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 241-187 chr2 74832289 74832481 + 2 NA promoter-TSS (NM_000189) promoter-TSS (NM_000189) -270 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 501-172 chr3 95494152 95494531 + 2 NA Intergenic Intergenic 188852 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 437-240 chr6 66079172 66079443 + 2 NA Intergenic L1MA8|LINE|L1 291428 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 590-179 chr9 78501735 78502179 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 204832 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 288-153 chr17 55758319 55758526 + 2 NA intron (NM_001102402, intron 1 of 5) intron (NM_001102402, intron 1 of 5) 7317 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 351-230 chr2 123282054 123282397 + 2 NA Intergenic Intergenic -208744 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 525-185 chr4 178172663 178173061 + 2 NA Intergenic Intergenic -264926 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 234-371 chr7 71940452 71940630 + 2 NA intron (NM_001363460, intron 4 of 5) L1MEg|LINE|L1 396850 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 711-50 chr4 36958498 36958969 + 2 NA Intergenic L1MCb|LINE|L1 -43046 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 280-268 chr3 162917723 162917889 + 2 NA Intergenic Intergenic 385495 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 389-117 chr16 3406967 3407252 + 2 NA intron (NM_003450, intron 2 of 2) MLT1A0|LTR|ERVL-MaLR 5894 NM_001347870 7727 Hs.155204 NM_003450 ENSG00000103343 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 403-43 chr11 10649945 10650281 + 2 NA intron (NM_001206881, intron 1 of 18) Tigger18a|DNA|TcMar-Tigger 2188 NM_001098579 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 334-455 chr6 39693938 39694140 + 2 NA intron (NM_001351503, intron 3 of 3) L1PA17|LINE|L1 31369 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 310-343 chr3 132803304 132803584 + 2 NA intron (NR_002811, intron 5 of 10) intron (NR_002811, intron 5 of 10) -80985 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 684-69 chr3 16208210 16208612 + 2 NA intron (NM_001319051, intron 3 of 9) MER33|DNA|hAT-Charlie -8365 NM_001319052 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 575-82 chr2 49630076 49630545 + 2 NA Intergenic Intergenic 343893 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 360-160 chr16 76288132 76288340 + 2 NA intron (NR_136213, intron 1 of 23) THE1C|LTR|ERVL-MaLR 10835 NM_001322191 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 171-5 chr1 57495236 57495334 + 2 NA intron (NM_001353980, intron 4 of 5) Kanga1a|DNA|TcMar-Tc2 -70364 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 248-14 chr1 147520681 147520895 + 2 NA Intergenic Intergenic -2913 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 293-142 chr16 56715278 56715454 + 2 NA Intergenic Intergenic -14763 NM_014669 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 264-353 chr6 47753773 47754006 + 2 NA Intergenic L1MEg|LINE|L1 -28150 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 376-185 chr2 63826361 63826707 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie -14430 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 241-51 chr10 105629971 105630168 + 2 NA Intergenic Intergenic 190264 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 656-85 chr4 92393182 92393570 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 88977 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 327-143 chr14 30420004 30420232 + 2 NA Intergenic Intergenic -139005 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 193-166 chr5 44465452 44465600 + 2 NA Intergenic L1PA15|LINE|L1 44756 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 367-96 chr12 105787054 105787255 + 2 NA Intergenic Intergenic 80380 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 282-52 chr10 76586626 76586887 + 2 NA Intergenic L1PBa|LINE|L1 -301288 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 287-260 chr3 110554080 110554293 + 2 NA Intergenic L2a|LINE|L2 515773 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 387-285 chr5 68421100 68421392 + 2 NA Intergenic L2c|LINE|L2 128669 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 370-354 chr4 91774535 91774808 + 2 NA Intergenic MER83B-int|LTR|ERV1 502631 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 506-232 chr5 96542707 96543149 + 2 NA intron (NR_130776, intron 4 of 4) L1PA8|LINE|L1 -109680 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 294-202 chr2 33928830 33928988 + 2 NA intron (NR_126403, intron 3 of 5) intron (NR_126403, intron 3 of 5) -138317 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 164-24 chr11 135025654 135025756 + 2 NA Intergenic Intergenic 40353 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 254-397 chr8 15921669 15921897 + 2 NA Intergenic Intergenic 264489 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 338-325 chr3 28095858 28096174 + 2 NA Intergenic AluJb|SINE|Alu -145603 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 252-161 chr18 4160349 4160540 + 2 NA intron (NM_001242761, intron 1 of 11) MIR|SINE|MIR -104158 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 291-278 chr3 8786738 8786962 + 2 NA Intergenic L1MB7|LINE|L1 -17236 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 311-220 chr18 70841962 70842215 + 2 NA Intergenic LTR8|LTR|ERV1 -191134 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 176-78 chr22 26192371 26192503 + 2 NA intron (NM_001184776, intron 1 of 14) ORSL-2b|DNA|hAT-Tip100 22963 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 274-164 chr17 61770703 61770876 + 2 NA intron (NM_032043, intron 14 of 19) L1MCb|LINE|L1 92770 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 202-50 chr12 47223899 47224093 + 2 NA intron (NM_138371, intron 3 of 3) intron (NM_138371, intron 3 of 3) -7553 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 224-147 chr2 81001927 81002100 + 2 NA Intergenic L1M1|LINE|L1 464933 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 483-116 chr2 79330286 79330709 + 2 NA Intergenic Intergenic 170347 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 391-28 chr1 215855127 215855425 + 2 NA intron (NM_206933, intron 44 of 71) L1PB1|LINE|L1 -217189 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 476-192 chr4 37900181 37900492 + 2 NA intron (NM_001253912, intron 1 of 20) intron (NM_001253912, intron 1 of 20) 9252 NM_015173 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 362-226 chr2 118259889 118260195 + 2 NA Intergenic L1ME1|LINE|L1 -73656 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 537-62 chr14 20159177 20159589 + 2 NA Intergenic L1MB5|LINE|L1 15647 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 211-333 chrX 64858096 64858235 + 2 NA Intergenic Intergenic 118285 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 726-32 chr15 83461272 83461870 + 2 NA intron (NM_003027, intron 1 of 8) LTR49-int|LTR|ERV1 14230 NM_003027 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 258-316 chr5 40180535 40180708 + 2 NA Intergenic L1PA7|LINE|L1 128330 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 284-459 chrX 94324115 94324272 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 649987 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 383-394 chr8 126903033 126903327 + 2 NA Intergenic Intergenic -109974 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 245-331 chr7 94642994 94643228 + 2 NA intron (NM_001362807, intron 1 of 11) intron (NM_001362807, intron 1 of 11) 13022 NM_001362809 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 344-100 chr12 15500550 15500771 + 2 NA intron (NM_030667, intron 4 of 26) AluSx1|SINE|Alu -45951 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 516-114 chr2 14637740 14638195 + 2 NA 3' UTR (NM_145175, exon 2 of 2) 3' UTR (NM_145175, exon 2 of 2) 5250 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 197-14 chr1 163184989 163185104 + 2 NA intron (NM_001254748, intron 2 of 5) intron (NM_001254748, intron 2 of 5) 17870 NM_001195303 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 401-296 chr7 41092339 41092620 + 2 NA Intergenic L1MC1|LINE|L1 -9125 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 286-131 chr14 86716322 86716539 + 2 NA Intergenic Intergenic -189348 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 494-32 chr11 6004417 6004754 + 2 NA Intergenic Intergenic -1393 NM_001005179 120793 Hs.553571 NM_001005179 ENSG00000183389 OR56A4 OR11-49 olfactory receptor family 56 subfamily A member 4 protein-coding 593-141 chr7 107475620 107476060 + 2 NA TTS (NM_005295).2 TTS (NM_005295).2 5783 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 510-212 chr4 133067729 133068110 + 2 NA Intergenic L1M2|LINE|L1 81197 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 365-237 chr20 53380718 53380972 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -171925 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 129-48 chr20 16458277 16458348 + 2 NA intron (NM_001199866, intron 12 of 22) intron (NM_001199866, intron 12 of 22) 115136 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 358-187 chr2 530728 531003 + 2 NA Intergenic L1MC4|LINE|L1 -14940 NR_146470 101927362 Hs.385749 NR_146470 ENSG00000225942 LINC01875 - long intergenic non-protein coding RNA 1875 ncRNA 422-222 chr4 137352286 137352555 + 2 NA Intergenic L1PA8|LINE|L1 -139621 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 332-404 chr5 18033904 18034234 + 2 NA Intergenic L1MA9|LINE|L1 226795 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 281-167 chr17 71531237 71531511 + 2 NA Intergenic Intergenic -329195 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 269-314 chr5 46024413 46024554 + 2 NA Intergenic ALR/Alpha|Satellite|centr -328103 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 626-15 chr10 31959934 31960317 + 2 NA Intergenic MER50-int|LTR|ERV1 -31249 NM_001270697 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 401-188 chr20 53018038 53018381 + 2 NA intron (NM_173485, intron 1 of 2) MLT1K|LTR|ERVL-MaLR 45851 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 304-43 chr10 21219482 21219737 + 2 NA Intergenic L1M2|LINE|L1 45307 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 488-68 chr13 74002679 74003079 + 2 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 131050 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 509-272 chrX 45533751 45534142 + 2 NA Intergenic L1MA2|LINE|L1 28558 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 373-92 chr12 61736509 61736759 + 2 NA intron (NM_178539, intron 4 of 4) MER94|DNA|hAT-Blackjack 456205 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 366-55 chr10 82101751 82102028 + 2 NA intron (NR_163253, intron 2 of 10) L1MEf|LINE|L1 131031 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 305-531 chr8 63396666 63396930 + 2 NA Intergenic MIRb|SINE|MIR -69051 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 180-170 chr8 83855656 83855776 + 2 NA Intergenic HAL1|LINE|L1 -327071 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 292-138 chr14 52087994 52088224 + 2 NA Intergenic Intergenic -19050 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 182-135 chr5 32925502 32925638 + 2 NA Intergenic Intergenic -21873 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 343-559 chr8 130439726 130440037 + 2 NA intron (NM_001362925, intron 1 of 29) L2b|LINE|L2 3779 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 357-344 chr5 56569825 56570058 + 2 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 36315 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 449-180 chr3 194904188 194904490 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -135630 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 215-261 chr5 87209023 87209167 + 2 NA intron (NR_105018, intron 2 of 3) L2a|LINE|L2 30106 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 258-292 chr4 66050482 66050677 + 2 NA Intergenic Intergenic -226245 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 433-201 chr4 46809253 46809576 + 2 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 99831 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 443-8 chr1 76846520 76846866 + 2 NA Intergenic L1M3|LINE|L1 -20787 NM_001320274 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 637-91 chr5 25773631 25774049 + 2 NA Intergenic LTR48|LTR|ERV1 582887 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 159-98 chr8 141694102 141694220 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 92152 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 304-508 chr8 63714108 63714328 + 2 NA Intergenic Intergenic -55212 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 278-398 chr7 54007371 54007540 + 2 NA Intergenic Intergenic -195524 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 332-197 chr17 34617116 34617330 + 2 NA intron (NM_001304438, intron 1 of 8) MIRb|SINE|MIR 36474 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 238-176 chr2 78220129 78220304 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 70515 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 294-459 chr8 55670192 55670389 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 103088 NM_001363177 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 240-429 chr8 134159893 134160092 + 2 NA Intergenic Intergenic 273496 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 206-47 chr11 48247023 48247213 + 2 NA Intergenic L1MA9|LINE|L1 2014 NM_001004727 119764 Hs.553565 NM_001004727 ENSG00000172208 OR4X2 OR11-105 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) protein-coding 303-125 chr14 67855910 67856167 + 2 NA intron (NM_133509, intron 4 of 10) intron (NM_133509, intron 4 of 10) 32446 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 300-455 chr8 58593960 58594247 + 2 NA intron (NM_001144772, intron 23 of 30) intron (NM_001144772, intron 23 of 30) 40842 NM_005625 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 235-145 chr18 13341521 13341691 + 2 NA intron (NM_181482, intron 2 of 5) L1MB2|LINE|L1 63501 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 382-29 chr10 19934701 19935028 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 118432 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 317-162 chr15 25075510 25075731 + 2 NA promoter-TSS (NR_003326) promoter-TSS (NR_003326) -308 NR_003326 100033423 NR_003326 ENSG00000206609 SNORD116-11 HBII-85-11 small nucleolar RNA, C/D box 116-11 snoRNA 278-397 chr7 53371298 53371528 + 2 NA Intergenic Intergenic 335780 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 263-250 chr3 10891653 10891878 + 2 NA intron (NM_014229, intron 6 of 13) MIR3|SINE|MIR 75537 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 269-380 chr7 31972091 31972341 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 98191 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 153-47 chr2 10699430 10699561 + 2 NA Intergenic L1MD3|LINE|L1 9485 NR_144555 106479524 Hs.646340 NR_144555 ENSG00000243819 RN7SL832P - RNA, 7SL, cytoplasmic 832, pseudogene pseudo 298-431 chr7 46474776 46474957 + 2 NA Intergenic Intergenic 222256 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 450-213 chr3 181256365 181256719 + 2 NA intron (NR_075091, intron 3 of 7) L1ME4a|LINE|L1 24805 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 340-275 chr2 119112737 119112963 + 2 NA Intergenic Intergenic 45901 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 390-218 chr21 28277996 28278367 + 2 NA Intergenic L1PA17|LINE|L1 -49514 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 472-300 chr7 46674432 46674794 + 2 NA Intergenic Intergenic 22509 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 445-117 chr2 41980224 41980603 + 2 NA Intergenic Intergenic -26607 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 220-100 chr13 56023449 56023645 + 2 NA Intergenic Intergenic 849093 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 371-53 chr10 98608780 98609035 + 2 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -161944 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 291-195 chr19 36557143 36557329 + 2 NA intron (NM_001145650, intron 2 of 4) L1M4b|LINE|L1 -15834 NR_110703 101927599 Hs.515376 NR_110703 ENSG00000233527 ZNF529-AS1 - ZNF529 antisense RNA 1 ncRNA 395-45 chr10 100172754 100173056 + 2 NA intron (NR_144757, intron 5 of 10) intron (NR_144757, intron 5 of 10) 13124 NM_001347861 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 249-354 chr6 55537464 55537653 + 2 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 41656 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 584-173 chr8 106798811 106799251 + 2 NA Intergenic Intergenic -28787 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 627-15 chr10 120307553 120308081 + 2 NA Intergenic Intergenic 47406 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 345-530 chr8 113234019 113234310 + 2 NA intron (NM_001363185, intron 3 of 66) LTR40b|LTR|ERVL 142988 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 454-13 chr1 202080902 202081211 + 2 NA Intergenic MER39B|LTR|ERV1 -41861 NM_004767 9283 Hs.132049 NM_004767 ENSG00000170075 GPR37L1 ET(B)R-LP-2|ETBR-LP-2|ETBRLP2 G protein-coupled receptor 37 like 1 protein-coding 156-92 chr6 74314809 74314916 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 245411 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 277-370 chr7 24252714 24252960 + 2 NA Intergenic AluSx1|SINE|Alu -31353 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 334-334 chr3 23675518 23675792 + 2 NA Intergenic L1MC3|LINE|L1 -130300 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 658-16 chr10 58415892 58416407 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 30739 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 358-371 chr5 75469405 75469719 + 2 NA intron (NM_031361, intron 2 of 16) L1M3e|LINE|L1 42067 NM_005713 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 193-140 chr3 62918312 62918447 + 2 NA Intergenic Intergenic -42963 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 232-300 chr5 42241231 42241392 + 2 NA Intergenic L1ME3D|LINE|L1 -65966 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 286-338 chr5 10103308 10103520 + 2 NA Intergenic Intergenic 146474 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 501-184 chr4 16825242 16825656 + 2 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 73196 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 589-164 chr9 20304519 20304960 + 2 NA Intergenic MIR|SINE|MIR 106499 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 350-135 chr14 57779559 57779802 + 2 NA intron (NR_159373, intron 1 of 10) L1PREC2|LINE|L1 85319 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 218-333 chr8 110197576 110197737 + 2 NA Intergenic Intergenic -221885 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 700-19 chr11 80225486 80225873 + 2 NA Intergenic Intergenic 537124 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 221-153 chr2 156197911 156198109 + 2 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 56921 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 139-32 chr14 82209275 82209378 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -433306 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 135 chr1 35931998 35932094 + 2 NA intron (NM_177422, intron 1 of 16) intron (NM_177422, intron 1 of 16) 941 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 347-543 chr9 32078860 32079181 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -305583 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 274-129 chr14 64517523 64517662 + 2 NA intron (NR_110550, intron 3 of 3) intron (NR_110550, intron 3 of 3) -12379 NM_001304508 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 262-242 chr20 2187816 2188041 + 2 NA Intergenic L1MB8|LINE|L1 -19000 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 345-200 chr17 33904472 33904647 + 2 NA intron (NM_001094, intron 1 of 9) MER5B|DNA|hAT-Charlie 252247 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 213-3 chr1 66473045 66473204 + 2 NA Intergenic Intergenic -60469 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 325-454 chr5 105800741 105800956 + 2 NA Intergenic LTR49-int|LTR|ERV1 701374 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 142-44 chr2 229113295 229113405 + 2 NA intron (NM_001330157, intron 1 of 1) MIR1_Amn|SINE|MIR 118742 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 590-30 chr12 38670462 38670884 + 2 NA intron (NM_153634, intron 19 of 19) intron (NM_153634, intron 19 of 19) 234918 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 268-225 chr20 46108297 46108514 + 2 NA Intergenic MIRb|SINE|MIR -9909 NM_001250 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 403-283 chr7 48075992 48076266 + 2 NA Intergenic L1MD2|LINE|L1 -12474 NM_001287426 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 423-200 chr4 76199437 76199815 + 2 NA intron (NM_001204255, intron 1 of 8) MER53|DNA|hAT 14198 NM_005506 950 Hs.349656 NM_005506 ENSG00000138760 SCARB2 AMRF|CD36L2|EPM4|HLGP85|LGP85|LIMP-2|LIMPII|SR-BII scavenger receptor class B member 2 protein-coding 392-237 chr4 115338808 115339046 + 2 NA Intergenic L1MEf|LINE|L1 -225307 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 258-315 chr5 35114270 35114451 + 2 NA intron (NR_037910, intron 1 of 7) MIRc|SINE|MIR 3762 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 257-109 chr14 62449312 62449546 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -309456 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 367-233 chr2 193259830 193260128 + 2 NA Intergenic AluSg|SINE|Alu 510134 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 363-82 chr11 75419955 75420186 + 2 NA intron (NM_001256802, intron 6 of 6) intron (NM_001256802, intron 6 of 6) 10559 NM_001039548 283212 Hs.292451 NM_173583 ENSG00000149243 KLHL35 - kelch like family member 35 protein-coding 492-32 chr10 113548514 113548851 + 2 NA Intergenic Intergenic -2149 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 304-47 chr10 32373198 32373363 + 2 NA intron (NR_104163, intron 1 of 1) MIR|SINE|MIR 5489 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 547-205 chr6 92018632 92019137 + 2 NA Intergenic Intergenic -328456 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 163-104 chr5 120718338 120718455 + 2 NA Intergenic Intergenic 186932 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 133-56 chr4 98483310 98483419 + 2 NA intron (NM_005723, intron 3 of 7) intron (NM_005723, intron 3 of 7) 175247 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 264-161 chr16 86192540 86192727 + 2 NA Intergenic Intergenic -3548 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 635-11 chr1 227329961 227330443 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -11710 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 547-187 chr5 95774213 95774632 + 2 NA intron (NM_014899, intron 8 of 11) intron (NM_014899, intron 8 of 11) -42320 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 298-343 chr4 149664008 149664279 + 2 NA intron (NM_001363507, intron 7 of 13) L1MA6|LINE|L1 151700 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 276-315 chr3 189903332 189903513 + 2 NA Intergenic Intergenic 73500 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 530-224 chr7 10947774 10948195 + 2 NA Intergenic MLT2F|LTR|ERVL -7831 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 228-34 chr10 43486029 43486227 + 2 NA Intergenic L1MEj|LINE|L1 49017 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 463-37 chr10 39268549 39268987 + 2 NA Intergenic ALR/Alpha|Satellite|centr 572172 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 282-341 chr4 56080500 56080678 + 2 NA Intergenic Intergenic -89606 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 360-434 chr7 64026059 64026270 + 2 NA non-coding (NR_039987, exon 4 of 4) non-coding (NR_039987, exon 4 of 4) 3938 NR_039987 100506050 Hs.405628 NR_039987 ENSG00000228564 LINC01005 - long intergenic non-protein coding RNA 1005 ncRNA 156-67 chr3 82775433 82775580 + 2 NA Intergenic L1MA4|LINE|L1 789364 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 366-322 chr4 101575422 101575723 + 2 NA Intergenic L1MA4A|LINE|L1 -215035 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 638-88 chr3 79816112 79816571 + 2 NA Intergenic L1PA15-16|LINE|L1 -48343 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 152-93 chr8 111964336 111964428 + 2 NA Intergenic L1P4a|LINE|L1 587743 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 233-36 chr10 44767429 44767597 + 2 NA Intergenic Intergenic -143803 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 382-394 chr7 140335333 140335613 + 2 NA exon (NM_001363378, exon 11 of 11) exon (NM_001363378, exon 11 of 11) 63057 NR_156491 84255 Hs.446021 NM_032295 ENSG00000157800 SLC37A3 - solute carrier family 37 member 3 protein-coding 336-262 chr2 44991847 44992156 + 2 NA Intergenic L1M4|LINE|L1 17451 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 202-254 chr8 83385862 83386009 + 2 NA Intergenic L1MA8|LINE|L1 -17823 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 227-311 chr6 84346005 84346176 + 2 NA Intergenic L2b|LINE|L2 -118447 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 320-43 chr1 241444302 241444538 + 2 NA Intergenic Intergenic 75365 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 600-139 chr9 1281157 1281749 + 2 NA Intergenic Intergenic 229966 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 371-83 chr12 63172649 63172898 + 2 NA Intergenic Intergenic -19963 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 380-142 chr16 6404567 6404759 + 2 NA intron (NM_018723, intron 2 of 15) MER81|DNA|hAT-Blackjack -369146 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 314-249 chr18 80083256 80083528 + 2 NA Intergenic Intergenic 16136 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 428-218 chr4 99673087 99673426 + 2 NA Intergenic L1PA11|LINE|L1 -18577 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 339-48 chr10 5582257 5582426 + 2 NA Intergenic Intergenic 13777 NR_134491 105376382 Hs.460282 NR_134491 ENSG00000242147 LINC02657 - long intergenic non-protein coding RNA 2657 ncRNA 470-229 chr5 155685835 155686303 + 2 NA Intergenic HAL1|LINE|L1 -640688 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 278-391 chr7 35453387 35453634 + 2 NA Intergenic Intergenic 139655 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 353-423 chr5 125645695 125646045 + 2 NA Intergenic L1PB1|LINE|L1 152609 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 336-317 chr20 17085924 17086159 + 2 NA Intergenic Intergenic -140066 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 298-207 chr2 44311582 44311780 + 2 NA intron (NM_000341, intron 7 of 9) intron (NM_000341, intron 7 of 9) 36201 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 237-159 chr19 57144371 57144535 + 2 NA intron (NM_052882, intron 1 of 4) L1MA7|LINE|L1 749 NM_052882 114026 Hs.348622 NM_052882 ENSG00000141946 ZIM3 ZNF264|ZNF657 zinc finger imprinted 3 protein-coding 252-125 chr15 24671773 24671922 + 2 NA Intergenic MIRc|SINE|MIR -3547 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 382-243 chr21 30375933 30376255 + 2 NA promoter-TSS (NR_036221) promoter-TSS (NR_036221) -716 NR_036221 100422891 NR_036221 ENSG00000265007 MIR4327 - microRNA 4327 ncRNA 753-41 chr3 60781641 60782131 + 2 NA intron (NR_148921, intron 4 of 4) L1MA9|LINE|L1 -164016 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 261-195 chr2 148376765 148377020 + 2 NA intron (NM_018328, intron 5 of 14) (TA)n|Simple_repeat|Simple_repeat -267859 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 206-60 chr12 115416563 115416717 + 2 NA Intergenic Intergenic 732014 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 219-274 chr5 9481383 9481560 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -29862 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 433-71 chr13 54673629 54674010 + 2 NA Intergenic Intergenic -361771 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 276-222 chr2 49056125 49056317 + 2 NA intron (NM_000145, intron 2 of 9) L1M2c|LINE|L1 -3382 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 314-294 chr2 110758469 110758657 + 2 NA intron (NM_001371254, intron 1 of 18) L1PA11|LINE|L1 25990 NM_001371254 319-171 chr16 20513379 20513618 + 2 NA Intergenic Intergenic 61977 NM_001308172 123876 Hs.298252 NM_001010845 ENSG00000183747 ACSM2A A-923A4.1|ACSM2 acyl-CoA synthetase medium chain family member 2A protein-coding 608-55 chr17_GL000205v2_random 411 857 + 2 NA Intergenic CER|Satellite|Satellite 57332 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 373-75 chr11 23871298 23871641 + 2 NA Intergenic Intergenic -452279 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 381-157 chr18 72404242 72404574 + 2 NA Intergenic Intergenic 139934 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 368-23 chr1 121487632 121487896 + 2 NA Intergenic Intergenic -31348 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 142-62 chr6 17405602 17405699 + 2 NA intron (NM_006366, intron 1 of 12) L1MEf|LINE|L1 12055 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 173-40 chr15 24856971 24857133 + 2 NA intron (NM_001349461, intron 1 of 12) intron (NM_001349461, intron 1 of 12) 540 NM_001349462 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 253-225 chr20 42143034 42143185 + 2 NA intron (NM_133170, intron 18 of 31) L2a|LINE|L2 -524732 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 302-503 chrX 136284415 136284585 + 2 NA Intergenic Intergenic -16463 NM_153834 139378 Hs.381354 NM_153834 ENSG00000156920 ADGRG4 GPR112|PGR17|RP1-299I16 adhesion G protein-coupled receptor G4 protein-coding 285-234 chr2 225319917 225320193 + 2 NA Intergenic Intergenic -79655 NM_001371273 322-494 chr7 70474591 70474830 + 2 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -657434 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 130-52 chr22 36655587 36655668 + 2 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 47231 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 219-32 chr10 44223481 44223648 + 2 NA Intergenic L1MC4a|LINE|L1 -69186 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 245-318 chr7 11485945 11486144 + 2 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 346154 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 298-158 chr17 5767786 5768008 + 2 NA Intergenic Intergenic -4337 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 162-5 chr1 102236519 102236601 + 2 NA Intergenic Intergenic -239326 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 263-359 chr6 71869558 71869819 + 2 NA Intergenic MER3|DNA|hAT-Charlie -17015 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 493-306 chr8 139496420 139496813 + 2 NA Intergenic Intergenic 206507 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 425-7 chr1 105226568 105226884 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 392209 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 225-382 chr9 24424566 24424776 + 2 NA Intergenic Intergenic 121005 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 179-119 chr8 79265563 79265719 + 2 NA Intergenic Intergenic -66547 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 354-126 chr14 20271373 20271711 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 28750 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 370-353 chr4 91148233 91148497 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 913334 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 373-192 chr2 51320615 51320807 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 288110 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 489-182 chr3 193758491 193758834 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 85347 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 683-99 chr9 130666044 130666513 + 2 NA intron (NM_021619, intron 1 of 4) CpG-28907 1684 NM_021619 59335 Hs.495311 NM_021619 ENSG00000130711 PRDM12 HSAN8|PFM9 PR/SET domain 12 protein-coding 269-168 chr18 71724792 71725026 + 2 NA Intergenic Intergenic 57317 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 359-354 chr4 41417352 41417636 + 2 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 56687 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 431-56 chr11 80160792 80161205 + 2 NA Intergenic Intergenic 601805 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 292-466 chr9 80171869 80172102 + 2 NA Intergenic AluSc5|SINE|Alu 196962 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 346-148 chr14 101133650 101133840 + 2 NA Intergenic L1ME3G|LINE|L1 12889 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 316-314 chr20 8703826 8703995 + 2 NA intron (NM_182734, intron 11 of 32) intron (NM_182734, intron 11 of 32) -127275 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 196-110 chr2 5782996 5783185 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 29506 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 352-391 chr4 151487001 151487265 + 2 NA intron (NM_001109977, intron 3 of 13) CR1_Mam|LINE|CR1 77957 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 229-44 chr10 105834319 105834510 + 2 NA Intergenic Intergenic -14081 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 241-120 chr14 79297186 79297417 + 2 NA intron (NM_001105250, intron 1 of 6) MER53|DNA|hAT 17921 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 307-462 chr7 104220689 104220892 + 2 NA Intergenic LTR8B|LTR|ERV1 -12743 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 356-342 chr3 195213744 195214026 + 2 NA intron (NM_152531, intron 2 of 3) MIRb|SINE|MIR 34035 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 276-459 chr8 108939784 108939963 + 2 NA Intergenic L1ME3|LINE|L1 -146755 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 451-235 chr8 111675627 111675922 + 2 NA Intergenic L1PA8|LINE|L1 299135 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 370-275 chr20 60642570 60642861 + 2 NA Intergenic Intergenic 78153 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 170-96 chr3 79650389 79650522 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 117543 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 398-158 chr2 46748814 46749155 + 2 NA intron (NM_144949, intron 1 of 1) intron (NM_144949, intron 1 of 1) 49689 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 129-27 chr18 42214273 42214359 + 2 NA intron (NR_046174, intron 2 of 9) L1PBa|LINE|L1 27648 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 420-235 chr5 79012379 79012632 + 2 NA intron (NM_013391, intron 14 of 15) MSTA-int|LTR|ERVL-MaLR -26547 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 309-457 chr5 130325977 130326153 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 421600 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 282-495 chr9 134611003 134611183 + 2 NA Intergenic Intergenic -30712 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 429-210 chr4 81998268 81998637 + 2 NA Intergenic MER31B|LTR|ERV1 375539 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 409-265 chr6 96060934 96061160 + 2 NA intron (NM_006581, intron 1 of 2) intron (NM_006581, intron 1 of 2) 45073 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 510-210 chr4 99674919 99675238 + 2 NA Intergenic L1PA11|LINE|L1 -20399 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 214-87 chr12 129435291 129435443 + 2 NA intron (NM_133448, intron 3 of 8) L1MA6|LINE|L1 226766 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 282-391 chr5 145485874 145486055 + 2 NA Intergenic Intergenic 349378 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 301-397 chr6 85000047 85000339 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -235595 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 277-68 chr11 20214827 20214991 + 2 NA Intergenic MLT2C1|LTR|ERVL -54434 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 428-145 chr2 187615993 187616335 + 2 NA Intergenic Intergenic -61659 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 248-20 chr1 181593109 181593308 + 2 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 109691 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 256-283 chr4 24864305 24864487 + 2 NA intron (NM_001130726, intron 3 of 11) LTR8A|LTR|ERV1 48582 NM_001330643 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 286-442 chr8 46965336 46965605 + 2 NA Intergenic L1PA16|LINE|L1 124584 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 305-79 chr10 107584576 107584758 + 2 NA Intergenic L1MA9|LINE|L1 -419961 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 455-41 chr10 116548460 116548834 + 2 NA intron (NM_000936, intron 4 of 12) MamRep38|DNA|hAT 2716 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 286-197 chr2 35533644 35533905 + 2 NA Intergenic L1MB7|LINE|L1 62369 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 478-113 chr17 34472040 34472473 + 2 NA Intergenic L2a|LINE|L2 107113 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 566-139 chr4 34244441 34244829 + 2 NA intron (NR_147184, intron 2 of 3) MIRb|SINE|MIR 25112 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 225-335 chr7 97446058 97446229 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -285943 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 420-207 chr4 107474478 107474863 + 2 NA Intergenic Intergenic 245564 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 449-123 chr2 80851725 80852004 + 2 NA Intergenic Intergenic 538485 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 304-28 chr1 198107089 198107314 + 2 NA Intergenic LTR8B|LTR|ERV1 -49797 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 158-125 chr9 69875078 69875183 + 2 NA intron (NM_001308084, intron 4 of 4) intron (NM_001308084, intron 4 of 4) 54313 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 398-159 chr2 47673597 47673930 + 2 NA Intergenic LTR49-int|LTR|ERV1 -103432 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 420-151 chr2 134850908 134851269 + 2 NA intron (NM_001307983, intron 3 of 9) L1PA16|LINE|L1 -6732 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 671-27 chr13 86718500 86718987 + 2 NA Intergenic L1MB2|LINE|L1 -193177 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 180-119 chr4 132127806 132127945 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 363037 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 269-178 chr2 20068168 20068407 + 2 NA Intergenic L1ME4b|LINE|L1 -16659 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 305-222 chr18 73507489 73507756 + 2 NA Intergenic Intergenic 182681 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 149-58 chr2 123109684 123109817 + 2 NA Intergenic L1ME1|LINE|L1 -36269 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 531-158 chr3 102536289 102536777 + 2 NA Intergenic Intergenic 101518 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 316-274 chr2 100683178 100683424 + 2 NA Intergenic L1MEg|LINE|L1 79562 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 505-197 chr3 103687121 103687458 + 2 NA Intergenic LTR37-int|LTR|ERV1 -163173 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 175-136 chr5 153531619 153531759 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 39517 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 219-169 chr2 78364995 78365107 + 2 NA Intergenic Intergenic -74320 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 487-299 chr8 135023508 135023816 + 2 NA Intergenic Intergenic 173727 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 321-94 chr11 32501168 32501349 + 2 NA Intergenic AluSg|SINE|Alu 65219 NR_120546 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 294-379 chr5 75912386 75912578 + 2 NA Intergenic AluJb|SINE|Alu -170901 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 461-266 chr8 84368787 84369052 + 2 NA intron (NM_001354319, intron 2 of 8) MER46C|DNA|TcMar-Tigger -46565 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 325-43 chr1 238751949 238752239 + 2 NA Intergenic Intergenic -266077 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 257-21 chr1 164578376 164578559 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 18745 NM_001353130 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 279-177 chr2 66535637 66535902 + 2 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -38261 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 322-244 chr2 57955316 57955629 + 2 NA intron (NM_001288838, intron 1 of 15) HAL1ME|LINE|L1 47821 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 368-111 chr12 69626285 69626485 + 2 NA Intergenic AluSx|SINE|Alu -15478 NM_201550 376132 Hs.448708 NM_201550 ENSG00000198812 LRRC10 HRLRRP|LRRC10A leucine rich repeat containing 10 protein-coding 334-193 chr16 51367292 51367483 + 2 NA intron (NR_039672, intron 6 of 6) AluJo|SINE|Alu -216115 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 252-368 chr6 61240758 61240914 + 2 NA Intergenic Intergenic -333294 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 239-226 chr21 44429628 44429798 + 2 NA intron (NM_003307, intron 27 of 31) L1M5|LINE|L1 -4150 NR_109964 101928607 Hs.666176 NR_109964 TRPM2-AS TRPM2-AS1 TRPM2 antisense RNA ncRNA 296-344 chr4 81964399 81964629 + 2 NA Intergenic Intergenic 409477 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 321-3 chr1 20238027 20238333 + 2 NA Intergenic MER49|LTR|ERV1 -4915 NR_147205 105376827 Hs.559701 NR_147205 ENSG00000228105 LINC01757 - long intergenic non-protein coding RNA 1757 ncRNA 304-339 chr3 79255479 79255756 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -156110 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 186-180 chr9 137561122 137561259 + 2 NA intron (NM_001346372, intron 8 of 8) L1MC4|LINE|L1 9311 NM_032477 64975 Hs.44017 NM_032477 ENSG00000182154 MRPL41 BMRP|MRP-L27|MRPL27|PIG3|RPML27 mitochondrial ribosomal protein L41 protein-coding 224-125 chr18 56672221 56672365 + 2 NA intron (NM_015285, intron 1 of 27) intron (NM_015285, intron 1 of 27) 20908 NM_052834 23335 Hs.465213 NM_015285 ENSG00000091157 WDR7 TRAG WD repeat domain 7 protein-coding 245-59 chr10 115787158 115787356 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 407532 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 276-271 chr21 26829203 26829431 + 2 NA Intergenic (GATA)n|Simple_repeat|Simple_repeat 16092 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 385-409 chr9 80517567 80517886 + 2 NA Intergenic L1PA11|LINE|L1 542703 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 426-79 chr15 24012335 24012744 + 2 NA intron (NR_126392, intron 4 of 5) MER52-int|LTR|ERV1 37392 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 371-358 chr7 34265404 34265674 + 2 NA Intergenic L1M4|LINE|L1 360000 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 293-26 chr1 242421602 242421860 + 2 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) 27737 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 385-419 chrX 86039012 86039327 + 2 NA intron (NM_001145414, intron 1 of 4) intron (NM_001145414, intron 1 of 4) 8137 NM_001362518 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM Rab escort protein protein-coding 252-87 chr12 23593421 23593655 + 2 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) -8952 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 538-28 chr10 61519271 61519613 + 2 NA Intergenic L1PA15|LINE|L1 39401 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 225-50 chr11 11353915 11354114 + 2 NA promoter-TSS (NM_001256686) promoter-TSS (NM_001256686) -764 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 389-246 chr3 144387251 144387607 + 2 NA Intergenic LTR84b|LTR|ERVL 414348 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 462-302 chr9 126737649 126737947 + 2 NA Intergenic L1M4|LINE|L1 -67208 NM_001135776 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 675-29 chr14 59648042 59648436 + 2 NA intron (NM_021136, intron 3 of 8) L1PA8|LINE|L1 -1219 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 457-215 chr6 49376051 49376358 + 2 NA Intergenic Intergenic 87049 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 286-5 chr1 18011462 18011629 + 2 NA Intergenic L1PA6|LINE|L1 -54112 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 452-71 chr13 93103802 93104225 + 2 NA Intergenic Intergenic 58672 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 200-249 chr7 14494061 14494224 + 2 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 347308 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 498-224 chr5 109997215 109997539 + 2 NA Intergenic Intergenic 114195 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 223-134 chr19 24335564 24335709 + 2 NA Intergenic ALR/Alpha|Satellite|centr -172189 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 301-362 chr5 102438668 102438950 + 2 NA intron (NM_173488, intron 6 of 13) intron (NM_173488, intron 6 of 13) 60192 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 362-431 chr8 53180441 53180658 + 2 NA Intergenic L1ME1|LINE|L1 71088 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 868-44 chr8 104220941 104221651 + 2 NA intron (NM_001348498, intron 20 of 24) MER112|DNA|hAT-Charlie -2039 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 395-49 chr10 128815603 128815945 + 2 NA Intergenic (ATATAG)n|Simple_repeat|Simple_repeat -97059 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 417-254 chr7 7487947 7488306 + 2 NA intron (NM_001037763, intron 13 of 34) MLT1G1|LTR|ERVL-MaLR 47747 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 378-312 chr4 74413107 74413298 + 2 NA Intergenic Intergenic -31934 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 175-44 chr12 60184034 60184196 + 2 NA Intergenic Intergenic 494745 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 217-176 chr2 98288056 98288221 + 2 NA intron (NM_001345864, intron 16 of 21) L1MEf|LINE|L1 -58017 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 318-166 chr14 51144456 51144721 + 2 NA Intergenic Intergenic -48884 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 407-195 chr3 68308750 68309107 + 2 NA intron (NM_001252216, intron 2 of 4) L2a|LINE|L2 -191709 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 344-102 chr12 22277999 22278285 + 2 NA intron (NM_003034, intron 2 of 4) intron (NM_003034, intron 2 of 4) 56572 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 434-56 chr11 133647695 133647913 + 2 NA Intergenic Intergenic -115303 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 315-126 chr14 45382195 45382387 + 2 NA Intergenic Intergenic -129089 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 299-4 chr1 17903962 17904134 + 2 NA Intergenic Intergenic 148715 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 208-184 chr4 59009767 59009940 + 2 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) -3720 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 373-124 chr14 87603333 87603622 + 2 NA Intergenic MER65A|LTR|ERV1 51817 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 400-53 chr11 63469212 63469439 + 2 NA intron (NM_054108, intron 3 of 5) intron (NM_054108, intron 3 of 5) 21842 NM_001146728 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 328-300 chr2 222196182 222196350 + 2 NA Intergenic Intergenic -101881 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 259-26 chr1 208600667 208600870 + 2 NA Intergenic Intergenic -127920 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 498-30 chr10 61039959 61040263 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 23836 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 354-478 chr8 126970139 126970457 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -42856 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 522-119 chr19 33353345 33353709 + 2 NA Intergenic L1MB8|LINE|L1 -20182 NM_001806 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT enhancer binding protein gamma protein-coding 364-204 chr2 59795371 59795562 + 2 NA Intergenic Intergenic 577758 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 388-306 chr6 73870647 73870907 + 2 NA Intergenic Intergenic 174574 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 350-329 chr3 174450354 174450545 + 2 NA Intergenic LOR1a|LTR|ERV1 -408885 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 407-183 chr22 49189743 49190045 + 2 NA Intergenic L1MC5a|LINE|L1 323124 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 465-48 chr11 43195491 43195891 + 2 NA Intergenic Intergenic 73678 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 445-246 chr7 14977000 14977287 + 2 NA Intergenic Intergenic -2285 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 447-80 chr15 61352524 61352882 + 2 NA Intergenic Intergenic -123401 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 507-20 chr1 226788998 226789359 + 2 NA Intergenic MER6|DNA|TcMar-Tigger -50003 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 414-358 chr9 116092296 116092678 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -61304 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 991-15 chr22 33227915 33228640 + 2 NA Intergenic Intergenic 119748 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 210-184 chr3 190731488 190731612 + 2 NA Intergenic Intergenic 131144 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 389-41 chr10 85232268 85232594 + 2 NA Intergenic Intergenic -33493 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 198-231 chr7 50249570 50249748 + 2 NA Intergenic L1MEd|LINE|L1 -54405 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 442-60 chr12 119099090 119099469 + 2 NA intron (NM_194286, intron 1 of 12) AluSz6|SINE|Alu 77205 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 393-32 chr10 4394047 4394280 + 2 NA intron (NR_108054, intron 2 of 2) intron (NR_108054, intron 2 of 2) 9917 NR_108054 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 282-401 chr6 62637827 62638002 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -351687 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 285-94 chr12 97356350 97356518 + 2 NA Intergenic (CAAA)n|Simple_repeat|Simple_repeat -106342 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 298-375 chr5 115918962 115919114 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -37533 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 329-112 chr12 17068171 17068414 + 2 NA Intergenic Intergenic 79545 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 372-480 chr8 65071860 65072094 + 2 NA Intergenic L1MA3|LINE|L1 108363 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 267-167 chr19 49380524 49380741 + 2 NA intron (NR_110729, intron 2 of 2) L1M5|LINE|L1 7449 NR_110729 101928295 Hs.640180 NR_110729 ENSG00000268686 LOC101928295 - uncharacterized LOC101928295 ncRNA 493-209 chr3 103467520 103467969 + 2 NA Intergenic Intergenic 56372 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 221-319 chr9 72925630 72925767 + 2 NA intron (NM_000689, intron 5 of 12) intron (NM_000689, intron 5 of 12) 27355 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 361-259 chr21 15227326 15227527 + 2 NA Intergenic AluSz|SINE|Alu -162426 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 343-490 chr7 2032051 2032305 + 2 NA intron (NM_001013837, intron 12 of 18) L2b|LINE|L2 56874 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 352-491 chr7 36942032 36942281 + 2 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -22724 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 457-278 chrX 95873502 95873766 + 2 NA Intergenic L1PA8A|LINE|L1 464268 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 360-215 chr2 62374294 62374645 + 2 NA Intergenic MER4A1|LTR|ERV1 131726 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 142-51 chr22 38720563 38720668 + 2 NA intron (NM_004286, intron 4 of 11) L1ME4b|LINE|L1 14671 NM_004286 9567 Hs.276925 NM_004286 ENSG00000100226 GTPBP1 GP-1|GP1|HSPC018 GTP binding protein 1 protein-coding 434-224 chr5 68415064 68415357 + 2 NA Intergenic Intergenic 122633 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 383-17 chr1 164415441 164415789 + 2 NA Intergenic L2c|LINE|L2 -143745 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 619-13 chr1 210038406 210038858 + 2 NA intron (NM_153262, intron 4 of 7) L1PB4|LINE|L1 100415 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 339-490 chr6 54947031 54947262 + 2 NA Intergenic Intergenic 100375 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 298-133 chr14_GL000225v1_random 108058 108312 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 301-154 chr17 8944004 8944207 + 2 NA intron (NM_001142633, intron 1 of 18) L1PREC2|LINE|L1 21602 NM_001251851 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 418-208 chr5 16096166 16096507 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 83455 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 660-67 chr3 114123071 114123541 + 2 NA Intergenic AluSq2|SINE|Alu 55470 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 153-24 chr12 16276885 16276991 + 2 NA intron (NM_001170798, intron 1 of 8) intron (NM_001170798, intron 1 of 8) 747 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 482-98 chr17 53056087 53056527 + 2 NA Intergenic Intergenic 70802 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 665-41 chr16 64251816 64252331 + 2 NA Intergenic L1M2|LINE|L1 869990 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 268-438 chr9 78709645 78709885 + 2 NA Intergenic Intergenic 412640 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 251-321 chr5 148838788 148839019 + 2 NA Intergenic Intergenic 12310 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 297-112 chr12 90183447 90183682 + 2 NA Intergenic L1MC2|LINE|L1 -109754 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 265-2 chr1 20418424 20418622 + 2 NA intron (NR_033887, intron 1 of 11) intron (NR_033887, intron 1 of 11) 10271 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 301-253 chr20 43992608 43992844 + 2 NA intron (NM_001098797, intron 2 of 8) intron (NM_001098797, intron 2 of 8) 46830 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 277-206 chr2 124872920 124873123 + 2 NA intron (NM_130773, intron 21 of 23) MSTA|LTR|ERVL-MaLR 847734 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 300-72 chr11 88114179 88114464 + 2 NA intron (NM_022337, intron 2 of 2) intron (NM_022337, intron 2 of 2) 61122 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 257-383 chr7 39280666 39280872 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 48365 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 389-210 chr20 56032997 56033207 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -27583 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 274-92 chr12 38371501 38371663 + 2 NA Intergenic Intergenic 54808 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 326-409 chr5 58244184 58244387 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -121944 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 189-196 chr8 23805438 23805582 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 49296 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 293-370 chr6 63361949 63362132 + 2 NA Intergenic Intergenic -42057 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 363-427 chr8 4135595 4135847 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 859193 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 288-351 chr5 163014283 163014557 + 2 NA Intergenic AluSc8|SINE|Alu -423151 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 316-290 chr2 133493450 133493636 + 2 NA intron (NM_207481, intron 3 of 17) L2a|LINE|L2 74920 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 483-150 chr21 23367966 23368400 + 2 NA intron (NR_040254, intron 3 of 4) MLT1F2|LTR|ERVL-MaLR 16652 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 329-474 chr5 129274228 129274539 + 2 NA Intergenic Intergenic 122764 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 244-244 chr3 180096811 180097012 + 2 NA Intergenic L2c|LINE|L2 -59974 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 483-193 chr4 170479763 170480137 + 2 NA Intergenic L1MD|LINE|L1 253359 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 345-217 chr18 21415000 21415280 + 2 NA intron (NM_001142966, intron 7 of 32) L1MEc|LINE|L1 172898 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 160-107 chr7 33605611 33605719 + 2 NA non-coding (NR_145412, exon 23 of 23) non-coding (NR_145412, exon 23 of 23) -299250 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 205-239 chr6 48120292 48120408 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -51661 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 273-205 chr2 24661390 24661639 + 2 NA intron (NM_001362950, intron 5 of 23) L1ME3D|LINE|L1 77037 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 342-435 chr5 165022627 165022908 + 2 NA Intergenic Intergenic 552488 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 352-202 chr18 78793380 78793616 + 2 NA Intergenic Intergenic -186777 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 420-33 chr10 37660803 37661106 + 2 NA Intergenic L1PB1|LINE|L1 -58023 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 204-128 chr18 74202986 74203147 + 2 NA Intergenic Intergenic 54543 NM_014177 29090 Hs.532835 NM_014177 ENSG00000075336 TIMM21 C18orf55|HSPC154|TIM21 translocase of inner mitochondrial membrane 21 protein-coding 250-20 chr1 125040847 125040986 + 2 NA Intergenic ALR/Alpha|Satellite|centr 3521804 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 331-339 chr3 13724887 13725177 + 2 NA intron (NR_027103, intron 4 of 5) MER58C|DNA|hAT-Charlie 74311 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 274-172 chr18 10813592 10813743 + 2 NA intron (NM_022068, intron 7 of 51) L1MB2|LINE|L1 -54018 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 292-192 chr19 27485816 27486091 + 2 NA Intergenic ALR/Alpha|Satellite|centr -307478 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 344-127 chr14 28787706 28787895 + 2 NA intron (NR_026731, intron 2 of 2) intron (NR_026731, intron 2 of 2) -2013 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 431-108 chr18 13996878 13997124 + 2 NA Intergenic AluSx1|SINE|Alu -81294 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 236-196 chr2 219626326 219626468 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -1173 NM_201574 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 298-410 chr6 137891503 137891692 + 2 NA Intergenic L1PA7|LINE|L1 -23364 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 WAKMAR2 lnc-TNFAIP3 wound and keratinocyte migration associated lncRNA 2 ncRNA 310-539 chr8 129304615 129304800 + 2 NA Intergenic L1MB8|LINE|L1 -63467 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 266-436 chr8 123248330 123248538 + 2 NA TTS (NR_037874) TTS (NR_037874) -7057 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 294-243 chr2 175373774 175374058 + 2 NA Intergenic Intergenic -192206 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 561-178 chr7 1363897 1364308 + 2 NA Intergenic Intergenic 95368 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 342-4 chr1 30295139 30295326 + 2 NA Intergenic Intergenic -257620 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 225-324 chr7 31040140 31040296 + 2 NA Intergenic Intergenic -12090 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 446-176 chr3 2028974 2029398 + 2 NA Intergenic Intergenic -69617 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 269-27 chr1 198217888 198218120 + 2 NA intron (NM_133494, intron 1 of 9) L1PB3|LINE|L1 61006 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 290-164 chr16 79082769 79082947 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 517879 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 248-256 chr3 145985758 145985928 + 2 NA Intergenic L1PA16|LINE|L1 83342 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 827-18 chr14 89595367 89595935 + 2 NA intron (NM_001085471, intron 1 of 6) L1MEg|LINE|L1 19435 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 404-271 chr6 40836871 40837161 + 2 NA Intergenic L1ME4b|LINE|L1 186264 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 345-497 chr7 54055354 54055561 + 2 NA Intergenic L1ME3Cz|LINE|L1 -243526 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 594-126 chr6 53711732 53712191 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -46205 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 267-457 chrX 40307575 40307830 + 2 NA Intergenic AluSp|SINE|Alu 44785 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 745-10 chr12 42829445 42830091 + 2 NA Intergenic MIR|SINE|MIR 137552 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 234-209 chr20 15133333 15133481 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -63433 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 537-177 chr4 87597123 87597510 + 2 NA Intergenic L1PB2|LINE|L1 -11213 NM_014208 1834 Hs.678914 NM_014208 ENSG00000152591 DSPP DFNA39|DGI1|DMP3|DPP|DSP dentin sialophosphoprotein protein-coding 386-265 chr4 75030941 75031274 + 2 NA intron (NM_015393, intron 2 of 3) intron (NM_015393, intron 2 of 3) 53601 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 357-478 chr9 32893991 32894264 + 2 NA Intergenic AluJo|SINE|Alu 107449 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 293-367 chr6 51436110 51436393 + 2 NA Intergenic Intergenic -185619 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 318-473 chr6 39370285 39370467 + 2 NA intron (NM_001289020, intron 15 of 21) intron (NM_001289020, intron 15 of 21) -47408 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 171-90 chr4 54866855 54867004 + 2 NA Intergenic L1MEf|LINE|L1 209001 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 332-18 chr1 107252370 107252686 + 2 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 104459 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 391-176 chr2 77643383 77643620 + 2 NA Intergenic L1MA4|LINE|L1 -121068 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 311-380 chr4 76343694 76343854 + 2 NA intron (NM_001042784, intron 17 of 23) AluSz6|SINE|Alu 37748 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 387-120 chr15 69637512 69637872 + 2 NA intron (NR_126437, intron 3 of 5) intron (NR_126437, intron 3 of 5) 45492 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 254-402 chr8 36801777 36802009 + 2 NA intron (NM_001031836, intron 2 of 26) AluSq|SINE|Alu 17519 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 448-82 chr14 50719392 50719775 + 2 NA TTS (NM_020921) TTS (NM_020921) -51277 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 441-22 chr10 39146370 39146734 + 2 NA Intergenic ALR/Alpha|Satellite|centr 449956 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 685-11 chr10 86140248 86140754 + 2 NA intron (NM_017551, intron 3 of 15) intron (NM_017551, intron 3 of 15) 124287 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 171-81 chr3 76200738 76200867 + 2 NA Intergenic Intergenic -415253 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 345-204 chr17 53909746 53909919 + 2 NA Intergenic Intergenic 86905 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 355-505 chr8 102188581 102188884 + 2 NA Intergenic Intergenic 50099 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 426-302 chr8 110843965 110844287 + 2 NA Intergenic Intergenic 183307 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 606-72 chr18 65408381 65408763 + 2 NA Intergenic Intergenic -341680 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 394-89 chr12 73267062 73267448 + 2 NA Intergenic L1PA11|LINE|L1 108065 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 160-62 chr3 35134668 35134786 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 259296 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 353-547 chr8 139927226 139927444 + 2 NA intron (NM_001160372, intron 19 of 22) AluJb|SINE|Alu 173200 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 309-487 chr6 124327005 124327212 + 2 NA intron (NM_001040214, intron 2 of 6) HAL1M8|LINE|L1 44103 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 498-139 chr2 188737575 188737995 + 2 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 52338 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 230-56 chr11 26494902 26495034 + 2 NA intron (NM_001313727, intron 1 of 23) intron (NM_001313727, intron 1 of 23) 21066 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 354-264 chr20 53274431 53274757 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 89311 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 370-181 chr17 62149414 62149694 + 2 NA Intergenic MIR3|SINE|MIR -84276 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 244-242 chr3 169900228 169900412 + 2 NA Intergenic Intergenic -11252 NR_130713 344658 Hs.439922 NM_182610 ENSG00000187033 SAMD7 - sterile alpha motif domain containing 7 protein-coding 232-84 chr13 27756248 27756414 + 2 NA Intergenic Intergenic -36152 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 524-203 chr5 90462301 90462758 + 2 NA intron (NM_203406, intron 1 of 1) L1M4|LINE|L1 -11400 NM_001370354 10622 Hs.282387 NM_006467 ENSG00000113356 POLR3G RPC32|RPC7 RNA polymerase III subunit G protein-coding 204-257 chr6 137620313 137620441 + 2 NA Intergenic L1MD2|LINE|L1 -45269 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 297-446 chr7 88624247 88624419 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -135367 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 314-560 chr8 56617294 56617473 + 2 NA Intergenic L1MDa|LINE|L1 -57560 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 221-208 chr4 2133879 2134063 + 2 NA intron (NM_181808, intron 16 of 25) L1MC3|LINE|L1 74644 NM_178557 339983 Hs.318529 NM_178557 ENSG00000185818 NAT8L CML3|NACED|NAT8-LIKE N-acetyltransferase 8 like protein-coding 256-264 chr3 98919132 98919358 + 2 NA Intergenic Intergenic -17550 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 591-174 chr9 79555493 79555923 + 2 NA Intergenic Intergenic -16065 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 416-254 chr4 104662806 104663075 + 2 NA intron (NR_125926, intron 6 of 9) L2a|LINE|L2 -168046 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 361-236 chr2 153750465 153750731 + 2 NA Intergenic L1M1|LINE|L1 -121324 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 367-122 chr14 59467787 59468145 + 2 NA Intergenic L2c|LINE|L2 -2586 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 303-311 chr4 42641490 42641660 + 2 NA intron (NM_001105529, intron 1 of 35) intron (NM_001105529, intron 1 of 35) 15530 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 294-48 chr10 101860705 101860888 + 2 NA intron (NM_024541, intron 24 of 25) L1ME2|LINE|L1 -16876 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 277-266 chr3 109766983 109767177 + 2 NA Intergenic L1MC1|LINE|L1 164252 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 483-71 chr14 81582375 81582768 + 2 NA Intergenic Intergenic 40490 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 190-70 chr17 34673842 34673965 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 93154 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 220-92 chr12 84422415 84422577 + 2 NA Intergenic Intergenic 490303 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 147-53 chr21 19654204 19654316 + 2 NA Intergenic Intergenic 245495 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 529-148 chr3 160472214 160472608 + 2 NA intron (NR_148403, intron 1 of 20) U7|snRNA|snRNA 13336 NR_148403 100174949 NR_148401 ENSG00000248710 TRIM59-IFT80 IFT80-L TRIM59-IFT80 protein ncRNA 375-89 chr11 131277064 131277255 + 2 NA Intergenic Intergenic -93456 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 217-356 chr7 130207389 130207566 + 2 NA promoter-TSS (NM_145268) promoter-TSS (NM_145268) -383 NM_145268 136263 Hs.351816 NM_145268 ENSG00000165120 SSMEM1 C7orf45 serine rich single-pass membrane protein 1 protein-coding 292-109 chr12 78921719 78921980 + 2 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) 57075 NM_005639 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 740-71 chr7 41603137 41603722 + 2 NA Intergenic L1MEg|LINE|L1 -90490 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 423-232 chr5 125524446 125524742 + 2 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 31333 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 325-67 chr10 67207397 67207634 + 2 NA intron (NM_001127384, intron 6 of 17) Charlie4a|DNA|hAT-Charlie 195249 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 239-277 chr4 45846387 45846542 + 2 NA Intergenic Intergenic 277590 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 414-167 chr2 145124088 145124474 + 2 NA Intergenic MLT2A2|LTR|ERVL 456314 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 175-150 chr7 67471883 67472003 + 2 NA Intergenic L1ME4a|LINE|L1 135967 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 561-30 chr10 117649219 117649684 + 2 NA Intergenic Intergenic -104383 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 303-57 chr10 98000086 98000352 + 2 NA intron (NM_001206528, intron 2 of 14) MER52A|LTR|ERV1 30402 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 348-499 chr7 93028597 93028884 + 2 NA Intergenic L1PREC2|LINE|L1 89239 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 719-17 chr12 23283281 23283765 + 2 NA Intergenic L1PA16|LINE|L1 107887 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 179-36 chr18 38068917 38069026 + 2 NA Intergenic Intergenic 411836 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 322-3 chr1 43277309 43277480 + 2 NA Intergenic Intergenic 7411 NM_001320244 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 571-105 chr3 81946544 81947002 + 2 NA Intergenic MER72|LTR|ERV1 -39369 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 543-24 chr1 239577400 239577860 + 2 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -51443 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 133-47 chr3 64840815 64840927 + 2 NA intron (NR_038264, intron 3 of 5) intron (NR_038264, intron 3 of 5) -152871 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 574-39 chr14 62485734 62486099 + 2 NA Intergenic Intergenic -345943 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 658-104 chr6 39689223 39689751 + 2 NA TTS (NM_001351503) TTS (NM_001351503) 35921 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 235-339 chr7 103002196 103002357 + 2 NA intron (NR_105043, intron 7 of 20) L1M1|LINE|L1 28846 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 280-408 chr8 82541611 82541877 + 2 NA Intergenic Intergenic -370360 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 203-258 chrX 66821969 66822146 + 2 NA Intergenic MIR|SINE|MIR -182759 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 255-331 chr5 62501476 62501718 + 2 NA intron (NM_016338, intron 16 of 29) intron (NM_016338, intron 16 of 29) -77138 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 263-344 chr5 168068805 168069018 + 2 NA intron (NM_001368145, intron 6 of 26) intron (NM_001368145, intron 6 of 26) -96934 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 258-74 chr11 111240201 111240425 + 2 NA Intergenic Intergenic -5412 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 570-125 chr20 43650875 43651383 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -15890 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 361-278 chr3 40953127 40953389 + 2 NA Intergenic L1MA9|LINE|L1 -246247 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 418-9 chr1 104200222 104200595 + 2 NA Intergenic L1MB7|LINE|L1 127385 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 322-170 chr15 39082798 39082981 + 2 NA Intergenic Intergenic -167780 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 353-285 chr20 42692116 42692449 + 2 NA intron (NM_133170, intron 6 of 31) L1M5|LINE|L1 6799 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 246-291 chr4 37529347 37529499 + 2 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) -54810 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 334-518 chr8 43823955 43824161 + 2 NA Intergenic ALR/Alpha|Satellite|centr 531616 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 212-287 chr6 126295309 126295515 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -44377 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 497-13 chr10 3792486 3792863 + 2 NA Intergenic L1ME2z|LINE|L1 -7393 NM_001160125 1316 Hs.4055 NM_001300 ENSG00000067082 KLF6 BCD1|CBA1|COPEB|CPBP|GBF|PAC1|ST12|ZF9 Kruppel like factor 6 protein-coding 292-418 chr7 112521983 112522230 + 2 NA Intergenic Intergenic 41115 NM_182597 286006 Hs.396189 NM_182597 ENSG00000181016 LSMEM1 C7orf53 leucine rich single-pass membrane protein 1 protein-coding 215-296 chr7 31156092 31156251 + 2 NA Intergenic L1MEd|LINE|L1 103710 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 406-38 chr10 67846308 67846679 + 2 NA Intergenic Intergenic -8305 NM_021800 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 394-91 chr12 110193317 110193573 + 2 NA intron (NR_144950, intron 14 of 18) intron (NR_144950, intron 14 of 18) 69088 NR_144951 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19 intraflagellar transport 81 protein-coding 284-112 chr14 45972631 45972863 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -91412 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 326-406 chr5 46384373 46384570 + 2 NA Intergenic ALR/Alpha|Satellite|centr -688091 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 345-145 chr14 37903999 37904231 + 2 NA Intergenic Intergenic -1991 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 551-145 chr5 4715855 4716233 + 2 NA Intergenic Intergenic -57437 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 336-430 chr4 117449921 117450118 + 2 NA intron (NR_125757, intron 2 of 3) L1PA13|LINE|L1 21621 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 248-85 chr12 47335333 47335566 + 2 NA Intergenic Intergenic -28050 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 292-72 chr11 37809040 37809256 + 2 NA Intergenic Intergenic -129453 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 531-8 chr1 115790871 115791279 + 2 NA Intergenic Intergenic -22270 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 233-312 chr5 115848272 115848454 + 2 NA intron (NR_157087, intron 1 of 5) intron (NR_157087, intron 1 of 5) 5876 NR_157087 1176 Hs.406191 NM_001284 ENSG00000177879 AP3S1 CLAPS3|Sigma3A adaptor related protein complex 3 subunit sigma 1 protein-coding 265-288 chr5 3034769 3035015 + 2 NA Intergenic Intergenic 117038 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 404-192 chr20 11698478 11698817 + 2 NA Intergenic Intergenic 172068 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 464-36 chr11 77563632 77564030 + 2 NA Intergenic L1MA3|LINE|L1 -7258 NR_130930 646029 Hs.609654 NM_001039908 LOC646029 - uncharacterized LOC646029 ncRNA 216-76 chr12 54967405 54967608 + 2 NA intron (NR_147062, intron 5 of 12) intron (NR_147062, intron 5 of 12) 6226 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 413-251 chr5 153628191 153628543 + 2 NA intron (NM_001258020, intron 3 of 16) MIR|SINE|MIR 136195 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 496-140 chr2 141931849 141932239 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 199657 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 216-331 chr8 58357841 58358006 + 2 NA Intergenic Intergenic -53341 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 482-87 chr15 97240083 97240417 + 2 NA Intergenic MIR|SINE|MIR 281561 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 354-218 chr2 114447957 114448254 + 2 NA intron (NM_001321910, intron 1 of 26) intron (NM_001321910, intron 1 of 26) 5464 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 253-388 chr7 64076042 64076191 + 2 NA intron (NM_001159522, intron 3 of 3) intron (NM_001159522, intron 3 of 3) 30682 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 201-156 chr3 82557919 82558044 + 2 NA Intergenic Intergenic 571839 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 211-258 chr6 62206984 62207159 + 2 NA intron (NR_146874, intron 1 of 13) MIRc|SINE|MIR 79154 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 460-260 chr6 61897922 61898329 + 2 NA intron (NR_146874, intron 5 of 13) intron (NR_146874, intron 5 of 13) 323995 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 235-33 chr10 20163676 20163843 + 2 NA intron (NM_032812, intron 6 of 13) intron (NM_032812, intron 6 of 13) 347327 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 595-76 chr2 21500559 21500982 + 2 NA Intergenic L1ME1|LINE|L1 209882 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 146-16 chr10 131197787 131197919 + 2 NA intron (NM_174937, intron 4 of 11) Arthur1B|DNA|hAT-Tip100 102635 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 249-410 chr8 68956119 68956318 + 2 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 147972 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 489-102 chr17 2675360 2675697 + 2 NA intron (NM_000430, intron 8 of 10) AluJo|SINE|Alu 17391 NR_106834 102465465 NR_106834 ENSG00000273606 MIR6776 hsa-mir-6776 microRNA 6776 ncRNA 312-442 chr6 3671071 3671288 + 2 NA Intergenic Intergenic 80833 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 322-300 chr21 18973529 18973816 + 2 NA Intergenic L1PA11|LINE|L1 -213860 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 474-40 chr10 123113569 123113978 + 2 NA Intergenic AluJb|SINE|Alu -22197 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 202-163 chr3 67788456 67788627 + 2 NA intron (NR_109992, intron 3 of 6) THE1D|LTR|ERVL-MaLR 133844 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 323-225 chr2 13458364 13458654 + 2 NA Intergenic Intergenic -451496 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 329-381 chr3 126406006 126406198 + 2 NA intron (NM_182628, intron 2 of 16) intron (NM_182628, intron 2 of 16) 11193 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 169-115 chr7 18817478 18817595 + 2 NA intron (NM_058176, intron 16 of 22) intron (NM_058176, intron 16 of 22) 300100 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 231-238 chr3 141798710 141798880 + 2 NA intron (NM_139209, intron 2 of 3) intron (NM_139209, intron 2 of 3) 20594 NM_139209 131890 Hs.680654 NM_139209 ENSG00000114124 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 254-65 chr11 101724280 101724450 + 2 NA Intergenic Intergenic -140358 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 418-94 chr17 52649515 52649848 + 2 NA Intergenic Intergenic -212440 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 521-264 chr9 4058055 4058417 + 2 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 93947 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 341-269 chr2 155594131 155594442 + 2 NA Intergenic L1MB7|LINE|L1 660645 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 258-231 chr20 40472248 40472428 + 2 NA Intergenic Intergenic 216898 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 589-92 chr3 96021298 96021712 + 2 NA Intergenic Intergenic -338312 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 307-49 chr10 39273161 39273348 + 2 NA Intergenic ALR/Alpha|Satellite|centr 576658 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 277-191 chr2 59961622 59961892 + 2 NA Intergenic Intergenic 421279 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 159-15 chr10 65516958 65517105 + 2 NA Intergenic L1MA3|LINE|L1 -54394 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 324-294 chr2 196107296 196107579 + 2 NA Intergenic Intergenic -38600 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 228-217 chr3 100768540 100768680 + 2 NA intron (NM_001349332, intron 30 of 35) intron (NM_001349332, intron 30 of 35) 59068 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 618-77 chr22 47819265 47819790 + 2 NA intron (NR_122046, intron 8 of 8) AluSx|SINE|Alu 187853 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 600-81 chr22 45387193 45387583 + 2 NA intron (NM_148674, intron 10 of 24) AluSz|SINE|Alu 26211 NM_148674 27127 Hs.334176 NM_148674 ENSG00000077935 SMC1B SMC1BETA|SMC1L2 structural maintenance of chromosomes 1B protein-coding 290-387 chr6 62974406 62974634 + 2 NA Intergenic Intergenic 345457 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 232-93 chr14 30042858 30043050 + 2 NA Intergenic Intergenic -115107 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 274-342 chr6 150575347 150575526 + 2 NA Intergenic MIR|SINE|MIR -24449 NR_138139 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 334-398 chr4 129096685 129096897 + 2 NA intron (NM_001099783, intron 1 of 5) intron (NM_001099783, intron 1 of 5) 639 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 379-300 chr6 125708962 125709169 + 2 NA intron (NR_038906, intron 3 of 3) intron (NR_038906, intron 3 of 3) 34712 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 396-299 chr5 153630134 153630346 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 138068 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 445-17 chr10 16057020 16057386 + 2 NA Intergenic Intergenic -196670 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 605-70 chr21 34001936 34002420 + 2 NA Intergenic MER33|DNA|hAT-Charlie 25796 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 385-129 chr17 13962502 13962763 + 2 NA Intergenic Intergenic -61866 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 233-31 chr10 30946484 30946704 + 2 NA intron (NR_026560, intron 1 of 6) L1MEc|LINE|L1 52923 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 282-219 chr2 114242285 114242451 + 2 NA Intergenic Intergenic -200273 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 203-170 chr4 107130933 107131041 + 2 NA Intergenic Intergenic -94674 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 422-102 chr15 94034260 94034648 + 2 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 73484 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 664-14 chr1 203339856 203340264 + 2 NA TTS (NM_002023) TTS (NM_002023) 11062 NM_002023 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 252-310 chr4 173865681 173865866 + 2 NA Intergenic Intergenic -31500 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 250-48 chr10 82913121 82913345 + 2 NA intron (NR_163253, intron 6 of 10) AluY|SINE|Alu -680313 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 639-49 chr16 78755568 78756163 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 656211 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 249-345 chr5 137284379 137284575 + 2 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 156280 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 628-104 chr5 63911353 63911940 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 50646 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 443-302 chr8 137748315 137748712 + 2 NA Intergenic Intergenic -334925 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 361-317 chr4 42226285 42226587 + 2 NA Intergenic L2a|LINE|L2 -73781 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 269-283 chr4 88048397 88048557 + 2 NA intron (NR_156488, intron 6 of 13) (AAT)n|Simple_repeat|Simple_repeat 40842 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 587-142 chr6 23262182 23262725 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -544529 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 296-21 chr1 209712235 209712415 + 2 NA intron (NM_181755, intron 5 of 6) MER2B|DNA|TcMar-Tigger 7479 NM_005525 3290 Hs.195040 NM_005525 ENSG00000117594 HSD11B1 11-DH|11-beta-HSD1|CORTRD2|HDL|HSD11|HSD11B|HSD11L|SDR26C1 hydroxysteroid 11-beta dehydrogenase 1 protein-coding 346-447 chr6 152912094 152912361 + 2 NA Intergenic L1PA15|LINE|L1 70814 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 310-172 chr16 56107469 56107752 + 2 NA intron (NR_027078, intron 2 of 4) intron (NR_027078, intron 2 of 4) 83484 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 342-306 chr3 16918855 16919118 + 2 NA intron (NM_001144382, intron 1 of 5).2 intron (NM_001144382, intron 1 of 5).2 -14104 NM_015184 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 212-275 chr6 36151966 36152117 + 2 NA Intergenic L1MC3|LINE|L1 21528 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 260-376 chr6 64875604 64875788 + 2 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -425722 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 478-99 chr15 68096971 68097360 + 2 NA intron (NM_016166, intron 2 of 13) L1M3|LINE|L1 42589 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 234-404 chr9 96687297 96687505 + 2 NA Intergenic Intergenic -32084 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 327-497 chr8 112107815 112108066 + 2 NA Intergenic Intergenic -535553 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 242-253 chr4 25432724 25432901 + 2 NA Intergenic HAL1|LINE|L1 55549 NM_013367 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 294-316 chr3 176995886 176996079 + 2 NA Intergenic MER47B|DNA|TcMar-Tigger -178981 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 491-249 chr7 71437664 71438101 + 2 NA intron (NM_022479, intron 5 of 10) AluJr|SINE|Alu -130112 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 220-397 chrX 55253757 55253950 + 2 NA Intergenic L1MA9|LINE|L1 10993 NM_001171252 139793 Hs.163473 NM_001017931 ENSG00000204279 PAGE3 CT16.6|GAGED1|PAGE-3 PAGE family member 3 protein-coding 312-388 chr4 107454792 107455015 + 2 NA Intergenic Intergenic 265331 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 369-48 chr10 82642819 82643095 + 2 NA intron (NR_163253, intron 3 of 10) L1MC5|LINE|L1 -410037 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 294-390 chr5 143769596 143769882 + 2 NA Intergenic Intergenic -42422 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 279-397 chr7 56258237 56258408 + 2 NA Intergenic MER4A1|LTR|ERV1 -141905 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 406-83 chr14 68116808 68117205 + 2 NA intron (NM_133509, intron 7 of 10) MIRc|SINE|MIR 293414 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 201-143 chr21 30325240 30325426 + 2 NA Intergenic L1M1|LINE|L1 -5018 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 362-210 chr2 58857494 58857792 + 2 NA intron (NR_033873, intron 3 of 13) AluJo|SINE|Alu 336890 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 283-306 chr3 196375868 196376085 + 2 NA intron (NM_015562, intron 5 of 10) AluSz6|SINE|Alu -37556 NR_037950 100534611 Hs.733180 NR_037950 TM4SF19-TCTEX1D2 - TM4SF19-TCTEX1D2 readthrough (NMD candidate) ncRNA 331-20 chr1 116237781 116238053 + 2 NA Intergenic L1ME3C|LINE|L1 126162 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 641-37 chr14 87422601 87422963 + 2 NA Intergenic Intergenic 232512 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 300-124 chr14 98855652 98855937 + 2 NA Intergenic Intergenic 144181 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 223-311 chr7 5106686 5106878 + 2 NA Intergenic AluJo|SINE|Alu 34722 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 305-167 chr15 27434382 27434604 + 2 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -273174 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 168-122 chr8 124141985 124142092 + 2 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 29484 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 277-379 chr7 57148850 57149036 + 2 NA Intergenic Intergenic -9079 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 317-40 chr10 5450895 5451183 + 2 NA intron (NM_005863, intron 1 of 9) intron (NM_005863, intron 1 of 9) 4430 NM_005863 10276 Hs.25155 NM_005863 ENSG00000173848 NET1 ARHGEF8|NET1A neuroepithelial cell transforming 1 protein-coding 465-41 chr10 125646709 125647128 + 2 NA intron (NM_001318133, intron 3 of 3) intron (NM_001318133, intron 3 of 3) 36245 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 171-14 chr10 63241091 63241193 + 2 NA intron (NM_001322252, intron 2 of 24) L1MC5|LINE|L1 28081 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 343-191 chr17 14976110 14976368 + 2 NA Intergenic Intergenic -38566 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 404-66 chr11 82425048 82425424 + 2 NA Intergenic L1MC1|LINE|L1 -21323 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 402-76 chr13 105071688 105071943 + 2 NA Intergenic Intergenic -394052 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 430-77 chr14 21974126 21974402 + 2 NA Intergenic L1PA16|LINE|L1 -303247 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 245-102 chr12 90175986 90176224 + 2 NA Intergenic L1MC|LINE|L1 -117213 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 469-28 chr10 49632123 49632435 + 2 NA intron (NM_001142929, intron 7 of 14) L2|LINE|L2 18242 NM_001142929 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 327-413 chr5 114290712 114291006 + 2 NA Intergenic L1MB5|LINE|L1 -71211 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 300-102 chr13 90194136 90194419 + 2 NA Intergenic L1MC3|LINE|L1 -36905 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 1228-5 chr3 51280081 51281084 + 2 NA intron (NM_004947, intron 27 of 52) intron (NM_004947, intron 27 of 52) -104709 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 362-73 chr10 103534310 103534496 + 2 NA intron (NM_004210, intron 1 of 5) L1MA5|LINE|L1 -16961 NR_120676 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 428-152 chr20 16090926 16091249 + 2 NA Intergenic L1MB7|LINE|L1 -105205 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 535-16 chr1 98283222 98283679 + 2 NA Intergenic Intergenic 72739 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 362-399 chr7 16167406 16167619 + 2 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -42974 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 175-92 chr2 229824570 229824704 + 2 NA intron (NM_001348330, intron 8 of 41) L1MC5|LINE|L1 97042 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 414-186 chr20 52643493 52643786 + 2 NA intron (NR_110038, intron 2 of 2) MIRb|SINE|MIR 22801 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 538-50 chr12 14411139 14411659 + 2 NA intron (NM_181352, intron 1 of 14) L1MB8|LINE|L1 26118 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 264-145 chr15 68858796 68858954 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -37980 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 377-340 chr5 166738583 166738813 + 2 NA Intergenic L1MEh|LINE|L1 187672 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 322-48 chr10 4832917 4833118 + 2 NA intron (NM_001040177, intron 2 of 9) intron (NM_001040177, intron 2 of 9) 6810 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 309-574 chr9 23276755 23276997 + 2 NA Intergenic Intergenic 395523 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 361-56 chr10 106491899 106492124 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 351846 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 309-414 chr4 178657840 178658060 + 2 NA Intergenic Intergenic -750014 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 551-140 chr4 121381877 121382280 + 2 NA Intergenic L1MD2|LINE|L1 -1060 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 136-2 chr1 51239094 51239164 + 2 NA intron (NM_014372, intron 1 of 2) FLAM_C|SINE|Alu 2856 NM_014372 26994 Hs.309641 NM_014372 ENSG00000123091 RNF11 CGI-123|SID1669 ring finger protein 11 protein-coding 378-430 chr8 50483003 50483375 + 2 NA intron (NR_135797, intron 8 of 20) intron (NR_135797, intron 8 of 20) 319058 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 219-318 chr6 132033516 132033675 + 2 NA Intergenic Intergenic 81668 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 351-328 chr3 197362409 197362685 + 2 NA Intergenic Intergenic -63226 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 515-27 chr10 99536455 99536802 + 2 NA TTS (NM_145285) TTS (NM_145285) 3686 NM_145285 159296 Hs.243272 NM_145285 ENSG00000119919 NKX2-3 CSX3|NK2.3|NKX2.3|NKX2C|NKX4-3 NK2 homeobox 3 protein-coding 206-264 chr8 77426132 77426277 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -24493 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 270-383 chr8 76817519 76817743 + 2 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -134356 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 232-391 chr8 136089789 136089965 + 2 NA Intergenic Intergenic -440921 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 266-402 chr7 126089320 126089519 + 2 NA Intergenic Intergenic -825128 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 221-148 chr2 124672014 124672164 + 2 NA intron (NM_130773, intron 13 of 23) MLT1B|LTR|ERVL-MaLR 646802 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 295-411 chr6 74617424 74617706 + 2 NA intron (NR_110856, intron 2 of 3) L1PREC2|LINE|L1 511217 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 274-227 chr2 205667880 205668128 + 2 NA Intergenic L1MA5|LINE|L1 -14496 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 398-316 chr7 22763213 22763492 + 2 NA Intergenic Intergenic -35732 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 450-154 chr2 164323863 164324184 + 2 NA Intergenic MER3|DNA|hAT-Charlie 244472 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 571-129 chr5 24046013 24046549 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 94933 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 147-15 chr12 63177643 63177725 + 2 NA Intergenic Intergenic -24874 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 478-255 chr6 86590711 86590980 + 2 NA Intergenic MLT2B2|LTR|ERVL -346683 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 419-140 chr2 61755555 61755953 + 2 NA Intergenic L2a|LINE|L2 98306 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 342-64 chr10 53188703 53188928 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -417115 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 424-162 chr20 61712656 61712935 + 2 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 6953 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 239-112 chr14 95063655 95063881 + 2 NA Intergenic LTR16C|LTR|ERVL 69735 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 340-542 chr8 108828839 108829136 + 2 NA Intergenic MIR|SINE|MIR -41393 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 382-38 chr10 68972875 68973112 + 2 NA intron (NM_001256910, intron 9 of 14) AluSx1|SINE|Alu -15810 NM_015634 26128 Hs.279580 NM_015634 ENSG00000198954 KIF1BP KBP|KIAA1279|TTC20 KIF1 binding protein protein-coding 505-150 chr2 81985173 81985621 + 2 NA Intergenic LTR12C|LTR|ERV1 -518451 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 547-175 chr5 23253989 23254413 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -253408 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 443-209 chr3 119402050 119402478 + 2 NA exon (NM_020754, exon 10 of 12) exon (NM_020754, exon 10 of 12) 61351 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 331-288 chr2 144520638 144520923 + 2 NA promoter-TSS (NM_014795) promoter-TSS (NM_014795) -661 NR_033258 9839 Hs.34871 NM_014795 ENSG00000169554 ZEB2 HSPC082|SIP-1|SIP1|SMADIP1|ZFHX1B zinc finger E-box binding homeobox 2 protein-coding 277-127 chr15 86181187 86181458 + 2 NA intron (NM_152336, intron 5 of 24) L1ME1|LINE|L1 -64605 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 283-466 chr9 94306464 94306700 + 2 NA Intergenic L1MC4a|LINE|L1 22062 NM_017561 54754 Hs.648183 NM_017561 ENSG00000130950 NUTM2F FAM22F|NUTMF NUT family member 2F protein-coding 195-79 chr16 77416050 77416206 + 2 NA intron (NM_199355, intron 3 of 22) L2a|LINE|L2 18906 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 344-279 chr20 42827846 42828156 + 2 NA intron (NM_133170, intron 2 of 31) THE1C-int|LTR|ERVL-MaLR -140742 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 324-325 chr21 29260278 29260440 + 2 NA intron (NR_027072, intron 1 of 1) MSTD|LTR|ERVL-MaLR -38563 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 359-324 chr3 81917515 81917765 + 2 NA Intergenic Intergenic -68502 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 781-2 chr1 112182639 112183237 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 192402 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 343-301 chr20 22683224 22683439 + 2 NA TTS (NR_146528) TTS (NR_146528) 2013 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 212-339 chr8 139383302 139383487 + 2 NA Intergenic L1ME2|LINE|L1 319729 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 212-139 chr2 4131323 4131516 + 2 NA Intergenic L1MEf|LINE|L1 157258 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 210-315 chr9 121339847 121340053 + 2 NA non-coding (NR_073037, exon 8 of 8) non-coding (NR_073037, exon 8 of 8) 30300 NM_001270526 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 327-546 chrX 131515169 131515371 + 2 NA Intergenic Intergenic -28804 NM_001004486 347468 Hs.553711 NM_001004486 ENSG00000171054 OR13H1 ORX1 olfactory receptor family 13 subfamily H member 1 protein-coding 423-73 chr14 25660502 25660803 + 2 NA Intergenic HERV16-int|LTR|ERVL -610355 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 294-28 chr1 244581500 244581725 + 2 NA intron (NM_001130957, intron 11 of 21) L1ME2z|LINE|L1 -71436 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 292-241 chr2 194662821 194662991 + 2 NA Intergenic MIRb|SINE|MIR -67689 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 217-241 chr3 173676553 173676710 + 2 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 92197 NM_001365927 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 359-151 chr15 37388901 37389094 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -287686 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 364-483 chrX 81710760 81711030 + 2 NA Intergenic L1MA7|LINE|L1 508793 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 585-102 chr3 192305186 192305631 + 2 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) 66778 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 387-32 chr10 14127265 14127638 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 53167 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 280-8 chr1 71499991 71500159 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 336937 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 224-185 chr22 28523059 28523268 + 2 NA intron (NM_001145418, intron 2 of 22) L1MEg1|LINE|L1 63294 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 362-96 chr11 97515938 97516238 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 1007663 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 400 chr1 14203128 14203427 + 2 NA Intergenic L2a|LINE|L2 216696 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 219-201 chr20 18857078 18857224 + 2 NA Intergenic Intergenic -26948 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 485-252 chr6 141043314 141043614 + 2 NA Intergenic L1MC4|LINE|L1 359650 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 229-283 chr4 149483779 149483911 + 2 NA intron (NM_001363507, intron 12 of 13) L1MA2|LINE|L1 329550 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 350-436 chr6 49869252 49869583 + 2 NA intron (NM_001205220, intron 1 of 7) MLT1F|LTR|ERVL-MaLR -2882 NM_001131 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 458-208 chr5 114682453 114682850 + 2 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 90762 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 225-7 chr1 112162693 112162833 + 2 NA Intergenic AluJr4|SINE|Alu 172227 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 353-318 chr3 30470989 30471219 + 2 NA Intergenic Intergenic -47764 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 288-211 chr2 155929973 155930194 + 2 NA Intergenic Intergenic 324848 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 179-31 chr16 79204886 79205049 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 395770 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 276-352 chr4 114433929 114434163 + 2 NA Intergenic L1PA13|LINE|L1 -164356 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 561-146 chr4 64950466 64950860 + 2 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 53837 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 330-150 chr14 43085279 43085461 + 2 NA Intergenic HAL1ME|LINE|L1 1421913 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 156-19 chr11 33074356 33074490 + 2 NA TTS (NM_018393) TTS (NM_018393) -1727 NR_015451 283267 Hs.533701 NR_015451 ENSG00000280798 LINC00294 NCRNA00294 long intergenic non-protein coding RNA 294 ncRNA 338-434 chr5 64528011 64528190 + 2 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) 22085 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 261-223 chr21 29698658 29698801 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -49446 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 512-138 chr2 198550818 198551235 + 2 NA Intergenic Intergenic -175929 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 203-241 chr8 135535367 135535523 + 2 NA intron (NM_006558, intron 2 of 8) intron (NM_006558, intron 2 of 8) 77989 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 521-187 chr5 16495848 16496221 + 2 NA intron (NM_001034850, intron 3 of 8) intron (NM_001034850, intron 3 of 8) 12964 NM_019000 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 229-260 chr3 130405382 130405579 + 2 NA intron (NM_001278298, intron 13 of 40) intron (NM_001278298, intron 13 of 40) 59964 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 216-97 chr14 56935729 56935896 + 2 NA Intergenic HAL1M8|LINE|L1 122654 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 380-133 chr15 46758223 46758426 + 2 NA Intergenic Intergenic -425765 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 282-498 chrX 38540190 38540455 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -21156 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 507-152 chr21 19269218 19269566 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -509580 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 148-42 chr2 65484543 65484640 + 2 NA Intergenic AluSx1|SINE|Alu -51992 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 180-66 chr18 1914281 1914385 + 2 NA Intergenic L1PA15-16|LINE|L1 -554704 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 453-119 chr2 102344354 102344751 + 2 NA non-coding (NR_104167, exon 9 of 9) non-coding (NR_104167, exon 9 of 9) 7295 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 728-24 chr12 108268874 108269428 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 51511 NM_001142345 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 327-58 chr10 81454449 81454745 + 2 NA Intergenic L1MB7|LINE|L1 -420597 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 562-122 chr2 204038967 204039370 + 2 NA Intergenic Intergenic 102420 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 258-264 chr3 89541450 89541703 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 433955 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 337-431 chr5 12480402 12480614 + 2 NA Intergenic L1MEg|LINE|L1 -94349 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 301-127 chr14 84094123 84094362 + 2 NA Intergenic Intergenic -1177690 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 416-298 chr6 130627360 130627730 + 2 NA Intergenic L1ME4a|LINE|L1 190428 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 379-349 chr8 107707972 107708169 + 2 NA Intergenic Intergenic -210152 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 623-136 chrX 23437641 23438076 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 103009 NM_173495 139411 Hs.319503 NM_173495 ENSG00000165186 PTCHD1 AUTSX4 patched domain containing 1 protein-coding 232-124 chr16 75152478 75152657 + 2 NA intron (NM_001318475, intron 1 of 3) L1MEf|LINE|L1 3516 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 320-165 chr15 26174628 26174877 + 2 NA Intergenic MER4CL34|LTR|ERV1 58939 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 468-257 chr5 84415795 84416114 + 2 NA Intergenic L1PA5|LINE|L1 -31074 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 287-343 chr6 12379918 12380114 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 89655 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 487-78 chr14 21035061 21035418 + 2 NA promoter-TSS (NM_001012264) promoter-TSS (NM_001012264) -432 NM_001012264 440163 Hs.666729 NM_001012264 ENSG00000206150 RNASE13 HEL-S-86p|RAL1 ribonuclease A family member 13 (inactive) protein-coding 745-35 chr20 56090899 56091404 + 2 NA Intergenic Intergenic -85632 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 324-33 chr1 187852254 187852513 + 2 NA Intergenic Intergenic 408755 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 480-140 chr2 49595230 49595632 + 2 NA Intergenic AluSx3|SINE|Alu 378772 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 337-160 chr14 77641498 77641736 + 2 NA Intergenic Intergenic -24850 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 189-154 chr4 169872954 169873101 + 2 NA Intergenic Intergenic 102875 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LINC02275 - long intergenic non-protein coding RNA 2275 ncRNA 293-137 chr15 96050983 96051226 + 2 NA Intergenic Intergenic 76737 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 267-314 chr5 8802812 8803074 + 2 NA Intergenic L1PB1|LINE|L1 -36789 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 268-56 chr10 93095677 93095864 + 2 NA Intergenic Intergenic 21877 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 481-70 chr12 28372952 28373306 + 2 NA intron (NM_001330367, intron 7 of 11) L1M4b|LINE|L1 -182391 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 126-4 chr1 119663204 119663303 + 2 NA Intergenic Intergenic -14987 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 394-288 chr6 103185307 103185541 + 2 NA Intergenic L1MCb|LINE|L1 1674122 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 325-387 chr4 43587737 43587985 + 2 NA Intergenic Intergenic -95318 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 262-159 chr16 59756616 59756841 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -1537 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 312-289 chr20 31270199 31270435 + 2 NA Intergenic L1M2|LINE|L1 12653 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 330-481 chr7 12702306 12702478 + 2 NA Intergenic AluSg|SINE|Alu 14759 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 367-29 chr1 179479984 179480220 + 2 NA intron (NR_073544, intron 16 of 25) THE1B-int|LTR|ERVL-MaLR 95846 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 531-149 chr3 8819505 8819935 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -50106 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 279-114 chr15 61649950 61650146 + 2 NA Intergenic AluJo|SINE|Alu -79870 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 133-6 chr1 241382242 241382351 + 2 NA Intergenic L1MEg|LINE|L1 -25066 NM_002924 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 278-100 chr14 38114064 38114331 + 2 NA Intergenic Intergenic -93707 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 381-407 chr9 30674629 30674879 + 2 NA Intergenic Intergenic -266300 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 553-173 chr4 48308844 48309390 + 2 NA Intergenic L1MC2|LINE|L1 -32412 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 336-78 chr10 105933323 105933633 + 2 NA Intergenic L1MA8|LINE|L1 -113145 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 313-279 chr2 150131836 150132010 + 2 NA Intergenic Intergenic 125084 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 406-303 chr8 128435641 128436026 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 128846 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 153-76 chr4 169852150 169852240 + 2 NA Intergenic LTR79|LTR|ERVL -94251 NM_017867 54969 Hs.406756 NM_017867 ENSG00000056050 HPF1 C4orf27 histone PARylation factor 1 protein-coding 150-11 chr10 43453791 43453916 + 2 NA intron (NM_001355444, intron 1 of 3) Tigger6a|DNA|TcMar-Tigger 16742 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 186-53 chr14 84269047 84269217 + 2 NA Intergenic L1ME3D|LINE|L1 -1002800 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 277-412 chr8 87671979 87672232 + 2 NA Intergenic MIRb|SINE|MIR 201910 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 208-49 chr11 113036182 113036341 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -72801 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 184-64 chr15 24799213 24799372 + 2 NA Intergenic L1MC3|LINE|L1 -24316 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 330-125 chr12 56865740 56866038 + 2 NA Intergenic MER101-int|LTR|ERV1 68519 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 395-278 chr5 117326957 117327215 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -88426 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 1032-12 chr21 22025256 22025934 + 2 NA intron (NR_109959, intron 4 of 5) intron (NR_109959, intron 4 of 5) 72864 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 355-447 chr6 145796036 145796269 + 2 NA 3' UTR (NM_032145, exon 3 of 3) 3' UTR (NM_032145, exon 3 of 3) 18643 NM_001348092 84085 Hs.421095 NM_032145 ENSG00000118496 FBXO30 Fbx30 F-box protein 30 protein-coding 322-290 chr20 24429370 24429683 + 2 NA Intergenic Intergenic -39673 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 463-66 chr12 30294969 30295282 + 2 NA Intergenic Intergenic 382119 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 455-63 chr12 103862652 103863069 + 2 NA intron (NR_027249, intron 11 of 15) intron (NR_027249, intron 11 of 15) -21626 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 445-140 chr2 188703025 188703312 + 2 NA Intergenic Intergenic 86955 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 510-42 chr11 41365905 41366248 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 93560 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 272-104 chr13 72287980 72288165 + 2 NA Intergenic L1MC5|LINE|L1 -420868 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 262-83 chr11 82570362 82570607 + 2 NA Intergenic L1PB3|LINE|L1 163380 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 296-19 chr1 190811879 190812076 + 2 NA Intergenic L1PA13|LINE|L1 187087 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 337-92 chr11 56109196 56109398 + 2 NA Intergenic L2a|LINE|L2 4254 NM_001005200 390151 Hs.553744 NM_001005200 ENSG00000181767 OR8H2 OR11-171 olfactory receptor family 8 subfamily H member 2 protein-coding 328-345 chr3 50727147 50727360 + 2 NA intron (NM_004947, intron 1 of 52) L1M4|LINE|L1 52173 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 286-253 chr20 59340058 59340275 + 2 NA Intergenic Intergenic 39555 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 530-184 chr4 132488126 132488602 + 2 NA Intergenic Intergenic -102725 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 298-125 chr14 74010861 74011068 + 2 NA intron (NM_001321987, intron 3 of 17) intron (NM_001321987, intron 3 of 17) 8324 NM_001330189 957 Hs.655070 NM_001249 ENSG00000187097 ENTPD5 CD39L4|NTPDase-5|PCPH ectonucleoside triphosphate diphosphohydrolase 5 (inactive) protein-coding 320-435 chr5 41189587 41189760 + 2 NA intron (NM_000065, intron 5 of 17) L1MA5|LINE|L1 23859 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 412-263 chr5 118091899 118092189 + 2 NA intron (NR_104997, intron 2 of 2) L1MCa|LINE|L1 -190530 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 353-137 chr14 47384470 47384815 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -41396 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 485-323 chrX 80372204 80372498 + 2 NA intron (NM_001170574, intron 3 of 4) Ricksha_0|DNA|MULE-MuDR 36847 NM_001170574 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 285-28 chr10 18449264 18449509 + 2 NA intron (NM_201593, intron 3 of 13) AluY|SINE|Alu 48811 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 335-357 chr3 98301453 98301628 + 2 NA Intergenic L1MA3|LINE|L1 18652 NM_001005482 79310 Hs.554711 NM_001005482 ENSG00000197938 OR5H2 OR3-10 olfactory receptor family 5 subfamily H member 2 protein-coding 583-37 chr11 109442600 109442927 + 2 NA Intergenic MIR|SINE|MIR 20573 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 340-440 chr5 45877497 45877691 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie -181214 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 325-227 chr17 69176423 69176722 + 2 NA intron (NM_080282, intron 23 of 39) intron (NM_080282, intron 23 of 39) -34677 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 716-62 chr5 45454889 45455447 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 241212 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 294-73 chr12 15575935 15576223 + 2 NA intron (NM_030671, intron 7 of 13) intron (NM_030671, intron 7 of 13) 29468 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 171-103 chr5 63188215 63188353 + 2 NA Intergenic Intergenic 609465 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 386-170 chr2 61686768 61687074 + 2 NA Intergenic AluSq2|SINE|Alu -148565 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 593-44 chr14 50369197 50369542 + 2 NA intron (NM_001282236, intron 2 of 8) Charlie8|DNA|hAT-Charlie 27512 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 264-22 chr1 218232308 218232498 + 2 NA Intergenic Intergenic -52890 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 604-96 chr20 24774963 24775466 + 2 NA Intergenic MIRb|SINE|MIR -174055 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 374-36 chr10 67585554 67585814 + 2 NA intron (NM_001127384, intron 3 of 17) L1PA3|LINE|L1 79976 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 385-267 chr4 59621092 59621382 + 2 NA Intergenic Intergenic 607664 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 161-57 chr2 133984741 133984873 + 2 NA Intergenic Intergenic -135128 NM_001371457 238-295 chr5 51474469 51474667 + 2 NA Intergenic UCON33|DNA|TcMar-Tigger 91120 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 367-324 chr4 46339283 46339592 + 2 NA intron (NM_001114175, intron 2 of 8) L2a|LINE|L2 49942 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 385-221 chr21 19832535 19832817 + 2 NA Intergenic Intergenic 67079 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 301-91 chr12 29928559 29928766 + 2 NA Intergenic Intergenic -143903 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 326-451 chr6 49988292 49988563 + 2 NA Intergenic L1MC1|LINE|L1 -18802 NM_001037729 245927 Hs.582789 NM_001037729 ENSG00000214642 DEFB113 DEFB-13 defensin beta 113 protein-coding 214-201 chr3 26079079 26079237 + 2 NA Intergenic Intergenic -205463 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 308-524 chr8 135350264 135350544 + 2 NA Intergenic Intergenic -107052 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 339-527 chr7 43353762 43354007 + 2 NA intron (NM_001287059, intron 4 of 27) L1MA4|LINE|L1 168658 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 134-19 chr11 115653054 115653186 + 2 NA Intergenic Intergenic 81642 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 350-508 chr8 49783812 49784110 + 2 NA Intergenic MER49|LTR|ERV1 -125835 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 127-73 chr7 29472739 29472825 + 2 NA intron (NM_001293072, intron 6 of 12) intron (NM_001293072, intron 6 of 12) -6930 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 220-369 chr8 89199073 89199233 + 2 NA Intergenic Intergenic 558558 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 224-193 chr3 24889731 24889883 + 2 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 60484 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 315-453 chr7 120565353 120565592 + 2 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 292297 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 166-63 chr20 12602476 12602616 + 2 NA Intergenic L1ME4a|LINE|L1 334417 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 374-124 chr16 46401346 46401561 + 2 NA Intergenic Intergenic 167644 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 390-238 chr3 63311451 63311757 + 2 NA intron (NM_001130003, intron 2 of 5) MER1B|DNA|hAT-Charlie 33296 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 121-21 chr18 69314397 69314504 + 2 NA Intergenic L1M5|LINE|L1 -86438 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 356-110 chr12 75299389 75299691 + 2 NA intron (NM_001355033, intron 7 of 14) intron (NM_001355033, intron 7 of 14) 30784 NM_001286547 84698 Hs.733835 NM_032606 ENSG00000180881 CAPS2 UG0636c06 calcyphosine 2 protein-coding 290-419 chr7 48130367 48130516 + 2 NA Intergenic LTR24|LTR|ERV1 -41017 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 389-28 chr10 31179220 31179526 + 2 NA Intergenic Intergenic -8510 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 155-45 chr16 71717259 71717377 + 2 NA intron (NM_015020, intron 1 of 18) intron (NM_015020, intron 1 of 18) -1478 NM_001289003 23035 Hs.709458 NM_015020 ENSG00000040199 PHLPP2 PHLPPL|PPM3B PH domain and leucine rich repeat protein phosphatase 2 protein-coding 323-86 chr11 61029803 61030014 + 2 NA Intergenic MER113|DNA|hAT-Charlie 58228 NR_045638 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 446-306 chr8 91914527 91914782 + 2 NA Intergenic L2a|LINE|L2 103026 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 372-343 chr3 175139397 175139693 + 2 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -24303 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 331-17 chr1 105163421 105163685 + 2 NA Intergenic Intergenic 455382 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 197-39 chr11 39446882 39447026 + 2 NA Intergenic Intergenic 798096 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 438-169 chr3 88819898 88820270 + 2 NA Intergenic Intergenic -287537 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 314-318 chr2 198181411 198181653 + 2 NA Intergenic Intergenic 193565 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 229-346 chr6 164800784 164800971 + 2 NA intron (NR_131926, intron 3 of 3) intron (NR_131926, intron 3 of 3) 21186 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 170-84 chr21 16399553 16399715 + 2 NA intron (NR_136543, intron 3 of 4) intron (NR_136543, intron 3 of 4) -19569 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 542-204 chr7 84814636 84814978 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat 282331 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 553-35 chr11 97758839 97759175 + 2 NA Intergenic L1MEc|LINE|L1 1250582 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 374-27 chr10 8746668 8746953 + 2 NA Intergenic Intergenic -151179 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 350-112 chr12 133223206 133223429 + 2 NA intron (NM_001191054, intron 6 of 8) HAL1|LINE|L1 12519 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 565-90 chr2 225730347 225730755 + 2 NA Intergenic L2c|LINE|L2 329665 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 253-135 chr14 68151647 68151815 + 2 NA intron (NM_133509, intron 7 of 10) L1MEc|LINE|L1 328139 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 259-443 chrX 78315914 78316137 + 2 NA intron (NM_001282187, intron 1 of 3) L1M1|LINE|L1 11586 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 419-158 chr2 215595082 215595358 + 2 NA Intergenic LTR49|LTR|ERV1 -122823 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 247-247 chr22 32797571 32797781 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -3140 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 644-98 chr7 78880434 78880883 + 2 NA intron (NM_001301128, intron 2 of 20) L1PA16|LINE|L1 -128330 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 197-93 chr2 41115757 41115941 + 2 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat -603414 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 114-12 chr12 119556504 119556573 + 2 NA Intergenic L1ME3F|LINE|L1 -37236 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 142-28 chr15 80823836 80823941 + 2 NA intron (NM_018689, intron 1 of 28) intron (NM_018689, intron 1 of 28) 18185 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 269-321 chr5 116309683 116309949 + 2 NA Intergenic L1MA2|LINE|L1 54073 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 242-56 chr11 43187804 43187951 + 2 NA Intergenic Intergenic 81492 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 436-190 chr3 110984548 110984916 + 2 NA Intergenic L1MA3|LINE|L1 85227 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 247-272 chr3 110489126 110489278 + 2 NA Intergenic Intergenic 580757 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 219-17 chr1 166174523 166174644 + 2 NA Intergenic Intergenic -7828 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 137-75 chr5 131366010 131366143 + 2 NA intron (NM_001038702, intron 2 of 4) intron (NM_001038702, intron 2 of 4) 102067 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 669-65 chr20 52690669 52691163 + 2 NA Intergenic Intergenic 70078 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 204-233 chr5 46098734 46098902 + 2 NA Intergenic Intergenic -402438 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 291-242 chr2 188612363 188612560 + 2 NA Intergenic HERV16-int|LTR|ERVL 177662 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 544-79 chr15 99907939 99908355 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 101124 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 484-47 chr12 44924993 44925448 + 2 NA Intergenic Intergenic -11292 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 403-192 chr3 16268084 16268455 + 2 NA intron (NM_001330670, intron 1 of 8) intron (NM_001330670, intron 1 of 8) 3057 NM_001330671 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 175-22 chr10 22738871 22739039 + 2 NA Intergenic Intergenic -24377 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 213-147 chr2 139543747 139543897 + 2 NA Intergenic MER65-int|LTR|ERV1 646498 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 126-36 chr2 33144987 33145096 + 2 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 10444 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 399-213 chr3 122270283 122270515 + 2 NA intron (NM_001178065, intron 4 of 6) L1M5|LINE|L1 -54849 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 229-420 chr9 115950857 115951011 + 2 NA Intergenic Intergenic -25727 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 328-540 chr7 71924404 71924604 + 2 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 412887 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 293-109 chr13 108669601 108669768 + 2 NA intron (NM_015011, intron 2 of 34) L1P|LINE|L1 40073 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 177-164 chr8 132800675 132800803 + 2 NA intron (NM_016018, intron 6 of 20) intron (NM_016018, intron 6 of 20) 25351 NM_016018 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 245-249 chr4 32858850 32859068 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 507921 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 262-254 chr20 53452098 53452297 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -100573 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 253-353 chr6 56100506 56100680 + 2 NA intron (NM_030820, intron 17 of 29) intron (NM_030820, intron 17 of 29) -8931 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 304-160 chr15 59956655 59956923 + 2 NA Intergenic Intergenic -47522 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 206-129 chr2 166946707 166946839 + 2 NA intron (NM_152381, intron 2 of 10) LTR37A|LTR|ERV1 58286 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 269-119 chr14 61350453 61350617 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 29092 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 495-17 chr1 214575048 214575383 + 2 NA Intergenic MIRb|SINE|MIR -23613 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 344-524 chr9 106600026 106600305 + 2 NA promoter-TSS (NR_107048) promoter-TSS (NR_107048) -763 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 212-203 chr3 13155167 13155369 + 2 NA Intergenic L1M4|LINE|L1 -81839 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 416-320 chr7 94868211 94868564 + 2 NA Intergenic L1PB1|LINE|L1 -39207 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 500-82 chr14 67016371 67016786 + 2 NA intron (NM_001024218, intron 8 of 21) Charlie4a|DNA|hAT-Charlie -172862 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 499-188 chr4 116475936 116476376 + 2 NA Intergenic Intergenic 176431 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 238-281 chr5 3228618 3228812 + 2 NA Intergenic Intergenic 50880 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 534-94 chr18 32361117 32361612 + 2 NA intron (NM_001242409, intron 2 of 5) Tigger19a|DNA|TcMar-Tigger 109518 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 358-192 chr2 16456825 16457012 + 2 NA Intergenic L1MEc|LINE|L1 208916 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 337-144 chr14 23420597 23420888 + 2 NA intron (NM_000257, intron 26 of 39) MIR3|SINE|MIR -2679 NR_030624 100126336 NR_030624 ENSG00000215991 MIR208B MIRN208B|mir-208b microRNA 208b ncRNA 225-162 chr2 117291132 117291308 + 2 NA Intergenic L1MA4|LINE|L1 -523471 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 185-51 chr13 80779551 80779683 + 2 NA Intergenic Intergenic -238774 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 391-223 chr3 5590555 5590865 + 2 NA Intergenic MER20|DNA|hAT-Charlie -340455 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 394-179 chr2 126609990 126610267 + 2 NA Intergenic L1ME3D|LINE|L1 -45807 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 334-250 chr2 31767507 31767811 + 2 NA Intergenic LTR37A|LTR|ERV1 36321 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 355-62 chr10 84634847 84635049 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 209779 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 631-128 chr8 140314310 140314687 + 2 NA intron (NM_001160372, intron 9 of 22) L1MA6|LINE|L1 143246 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 560-77 chr2 19085809 19086221 + 2 NA Intergenic Intergenic -59044 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 616-127 chr4 182033940 182034397 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 110347 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 431-264 chr7 16944834 16945198 + 2 NA Intergenic MER4CL34|LTR|ERV1 -63033 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 774-28 chr15 83848525 83849081 + 2 NA intron (NM_207517, intron 7 of 29) MIRb|SINE|MIR 194680 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 323-114 chr12 59954234 59954434 + 2 NA Intergenic Intergenic 264964 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 510-96 chr16 31597493 31597934 + 2 NA Intergenic L1M4a1|LINE|L1 -28189 NR_027011 440359 Hs.650902 NR_027011 YBX3P1 CSDAP1 Y-box binding protein 3 pseudogene 1 pseudo 172-29 chr12 65005199 65005329 + 2 NA Intergenic L1MEi|LINE|L1 -12973 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 459-303 chr8 117220951 117221313 + 2 NA Intergenic L1MEc|LINE|L1 86137 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 255-399 chr7 119441518 119441716 + 2 NA Intergenic L1MB5|LINE|L1 465758 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 252-189 chr2 60303162 60303392 + 2 NA Intergenic Intergenic 79759 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 541-191 chr5 129218084 129218604 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 120656 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 497-96 chr17 74120956 74121339 + 2 NA Intergenic Intergenic -82531 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 408-99 chr13 87389208 87389543 + 2 NA Intergenic L1MA5|LINE|L1 229365 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 149-53 chr2 67580832 67580927 + 2 NA Intergenic Intergenic 183546 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 215-179 chr21 22068479 22068622 + 2 NA intron (NR_109959, intron 2 of 5) intron (NR_109959, intron 2 of 5) 29909 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 309-507 chr7 31859830 31860119 + 2 NA intron (NM_001191059, intron 8 of 18) L1ME3G|LINE|L1 172759 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 550-5 chr1 55630662 55631044 + 2 NA Intergenic L1ME3E|LINE|L1 314110 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 232-58 chr11 42841388 42841583 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 427884 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 356-105 chr12 29669478 29669781 + 2 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 114313 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 206-79 chr15 81521804 81521981 + 2 NA Intergenic Intergenic -147679 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 187-39 chr12 31538054 31538173 + 2 NA intron (NM_001308339, intron 1 of 22) L1MA3|LINE|L1 -51810 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 561-31 chr10 124073878 124074271 + 2 NA intron (NM_001270765, intron 1 of 5) intron (NM_001270765, intron 1 of 5) 18332 NM_015892 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 269-351 chr6 76483051 76483277 + 2 NA Intergenic L1PB2|LINE|L1 110459 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 274-329 chr5 173049208 173049426 + 2 NA Intergenic Intergenic -7035 NM_153607 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 270-405 chr8 119120705 119120864 + 2 NA Intergenic Intergenic -52002 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 196-42 chr10 125677547 125677717 + 2 NA intron (NM_001128202, intron 1 of 3) L1MA3|LINE|L1 5531 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 199-13 chr1 181839684 181839850 + 2 NA Intergenic 7SK|RNA|RNA 221945 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 384-175 chr2 106610221 106610548 + 2 NA Intergenic Intergenic 123020 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 585-111 chr4 99920062 99920475 + 2 NA intron (NM_001031723, intron 3 of 7) intron (NM_001031723, intron 3 of 7) -25722 NM_001243736 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 129-31 chr2 4444145 4444255 + 2 NA Intergenic Intergenic 212022 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 578-90 chr2 89815882 89816441 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -178254 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 553-48 chr12 61052014 61052368 + 2 NA Intergenic Intergenic 1140648 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 264-10 chr1 95809772 95809963 + 2 NA Intergenic Intergenic -182201 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 411-17 chr1 215489958 215490245 + 2 NA Intergenic Intergenic -77203 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 202-275 chr9 103626543 103626721 + 2 NA Intergenic Intergenic -301599 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 327-213 chr18 29439206 29439515 + 2 NA Intergenic L2a|LINE|L2 -859550 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 208-43 chr11 92793623 92793807 + 2 NA intron (NM_001008781, intron 8 of 24) intron (NM_001008781, intron 8 of 24) 121913 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 502-102 chr16 7177909 7178306 + 2 NA intron (NM_018723, intron 4 of 15) MLT1I|LTR|ERVL-MaLR -154738 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 261-398 chr8 138511909 138512168 + 2 NA Intergenic Intergenic -14308 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 335-284 chr2 225158291 225158528 + 2 NA Intergenic Intergenic -115941 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 266-371 chr6 122263578 122263781 + 2 NA Intergenic L1MA8|LINE|L1 -135872 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 293-265 chr3 86969816 86970048 + 2 NA intron (NM_001320494, intron 2 of 3) MIRb|SINE|MIR 21217 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 418-137 chr2 234332825 234333173 + 2 NA Intergenic Intergenic 121596 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 232-273 chr4 84434436 84434617 + 2 NA Intergenic Intergenic 63708 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 330-194 chr16 77647489 77647668 + 2 NA Intergenic Intergenic -74914 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 235-213 chr21 35149932 35150149 + 2 NA Intergenic Intergenic -100742 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 305-226 chr19 27473896 27474076 + 2 NA Intergenic ALR/Alpha|Satellite|centr -319445 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 253-407 chr8 113947374 113947528 + 2 NA Intergenic Intergenic -510512 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 472-327 chr8 123247180 123247568 + 2 NA intron (NM_001204180, intron 2 of 5) L1M4|LINE|L1 -5997 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 568-145 chr4 31275739 31276119 + 2 NA Intergenic Intergenic 104785 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 436-17 chr1 164006411 164006811 + 2 NA Intergenic L1M5|LINE|L1 -552749 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 266-392 chr7 33305225 33305385 + 2 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 175741 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 231-369 chr8 139037187 139037399 + 2 NA Intergenic L2a|LINE|L2 -123252 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 203-41 chr11 105373570 105373698 + 2 NA Intergenic Intergenic -233865 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 205-84 chr14 59067858 59068045 + 2 NA Intergenic Intergenic -120716 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 660-68 chr3 175673471 175674069 + 2 NA intron (NM_207015, intron 11 of 13) HAL1b|LINE|L1 102563 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 270-152 chr17 52449584 52449749 + 2 NA intron (NR_146898, intron 1 of 3) Charlie2b|DNA|hAT-Charlie 59144 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 344-58 chr10 91089873 91090072 + 2 NA Intergenic Intergenic 44164 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 323-46 chr10 28971401 28971700 + 2 NA Intergenic Intergenic 125142 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 219-20 chr1 187854159 187854325 + 2 NA Intergenic Intergenic 410614 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 147-91 chr9 118893375 118893468 + 2 NA Intergenic Intergenic 213750 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 188-70 chr16 63512475 63512620 + 2 NA Intergenic Intergenic -1476109 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 245-241 chr3 181118099 181118280 + 2 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) -56955 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 289-287 chr3 6068630 6068892 + 2 NA Intergenic MIRb|SINE|MIR 736688 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 426-140 chr2 120642377 120642736 + 2 NA Intergenic HAL1|LINE|L1 -93312 NM_001371271 328-507 chr6 91009466 91009720 + 2 NA Intergenic L1PA16|LINE|L1 -422521 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 338-80 chr10 107807577 107807862 + 2 NA Intergenic Intergenic 261574 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 384-319 chr6 100037426 100037660 + 2 NA intron (NR_038384, intron 2 of 2) intron (NR_038384, intron 2 of 2) -43305 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 291-174 chr17 54036893 54037114 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 214076 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 252-64 chr11 36523421 36523619 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -13248 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 242-307 chr5 79933312 79933521 + 2 NA Intergenic MER89|LTR|ERV1 -3163 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 355-314 chr3 23556606 23556956 + 2 NA intron (NM_001370225, intron 5 of 5) intron (NM_001370225, intron 5 of 5) -249174 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 255-62 chr11 93975353 93975593 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -45881 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 565-143 chr5 78822275 78822766 + 2 NA intron (NM_198709, intron 7 of 7) intron (NM_198709, intron 7 of 7) 162790 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 417-207 chr4 156717019 156717272 + 2 NA Intergenic Intergenic 254654 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 658-84 chr3 135954150 135954661 + 2 NA Intergenic L1M3f|LINE|L1 -11323 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 335-343 chr3 44596861 44597061 + 2 NA 3' UTR (NM_173658, exon 3 of 3) 3' UTR (NM_173658, exon 3 of 3) 11997 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 416-241 chr4 12806428 12806789 + 2 NA Intergenic LTR62|LTR|ERVL 583157 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 510-223 chr5 29713540 29713884 + 2 NA Intergenic Intergenic -166848 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 389-167 chr2 53434457 53434786 + 2 NA Intergenic Intergenic -333162 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 565-192 chr9 78498553 78498982 + 2 NA Intergenic AluSx|SINE|Alu 201642 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 321-570 chr8 118200462 118200774 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -88799 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 339-546 chr7 122654719 122655047 + 2 NA intron (NM_001167940, intron 3 of 29) Tigger1|DNA|TcMar-Tigger 44234 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 561-188 chr7 91396431 91396931 + 2 NA Intergenic Intergenic 132248 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 277-3 chr1 41197946 41198184 + 2 NA intron (NM_001172218, intron 1 of 15) MIRb|SINE|MIR -35048 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 158-89 chr5 3991091 3991197 + 2 NA Intergenic MIR3|SINE|MIR 395312 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 297-120 chr13 73363537 73363707 + 2 NA Intergenic L2a|LINE|L2 -200622 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 286-209 chr2 79373045 79373290 + 2 NA Intergenic Intergenic 127677 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 328-606 chr9 36814352 36814678 + 2 NA Intergenic L2c|LINE|L2 9084 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 509-266 chr8 137387756 137388071 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 25675 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 276-51 chr10 39116565 39116753 + 2 NA Intergenic ALR/Alpha|Satellite|centr 420063 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 268-216 chr2 173887306 173887541 + 2 NA Intergenic Intergenic 76457 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 282-446 chr8 78473026 78473267 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -43194 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 704-77 chr7 49920814 49921332 + 2 NA 3' UTR (NM_198570, exon 4 of 4) 3' UTR (NM_198570, exon 4 of 4) 145740 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 400-69 chr12 65259604 65259839 + 2 NA Intergenic L1MB8|LINE|L1 -18962 NM_001031679 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 309-208 chr17 68920545 68920774 + 2 NA intron (NM_001288985, intron 13 of 39) intron (NM_001288985, intron 13 of 39) 34733 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 234-95 chr14 54534465 54534651 + 2 NA intron (NM_006568, intron 4 of 5) intron (NM_006568, intron 4 of 5) 24652 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 219-13 chr1 115243087 115243254 + 2 NA Intergenic L1M6|LINE|L1 -39864 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 533-183 chr5 63861869 63862214 + 2 NA Intergenic L1M4|LINE|L1 100251 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 151-65 chr5 150903310 150903385 + 2 NA TTS (NM_001346557) TTS (NM_001346557) 1636 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 684-54 chr2 59415978 59416533 + 2 NA Intergenic Intergenic 198547 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 347-30 chr1 211047178 211047475 + 2 NA intron (NM_002238, intron 5 of 10) intron (NM_002238, intron 5 of 10) 86048 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 413-230 chr5 8718030 8718255 + 2 NA Intergenic Intergenic -121590 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 363-100 chr12 26737954 26738241 + 2 NA intron (NM_002223, intron 2 of 56) MIR|SINE|MIR 95097 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 287-33 chr1 223639770 223639997 + 2 NA intron (NM_001143962, intron 2 of 20) MIRc|SINE|MIR 25818 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 138-103 chrX 32365356 32365446 + 2 NA intron (NM_000109, intron 34 of 78) intron (NM_000109, intron 34 of 78) 46827 NM_004012 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 341-292 chr20 24394778 24395025 + 2 NA Intergenic Intergenic -74298 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 383-349 chr7 13370267 13370545 + 2 NA Intergenic Intergenic 616108 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 522-180 chr3 98404172 98404568 + 2 NA Intergenic L1PA14|LINE|L1 13704 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 280-403 chr8 67725033 67725282 + 2 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 21203 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 252-199 chr2 95329753 95329941 + 2 NA intron (NM_013434, intron 2 of 8) intron (NM_013434, intron 2 of 8) -16811 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 308-43 chr1 239854093 239854350 + 2 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 45651 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 317-117 chr12 127819487 127819776 + 2 NA Intergenic Intergenic -61986 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 378-191 chr18 31413927 31414252 + 2 NA 3' UTR (NM_177986, exon 16 of 16) 3' UTR (NM_177986, exon 16 of 16) 12899 NR_110788 101927718 Hs.625473 NR_110788 ENSG00000266729 DSG1-AS1 - DSG1 antisense RNA 1 ncRNA 390-180 chr2 60173435 60173797 + 2 NA Intergenic Intergenic 209420 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 382-253 chr22 45411140 45411430 + 2 NA intron (NM_148674, intron 1 of 24) L1MB7|LINE|L1 2314 NM_148674 27127 Hs.334176 NM_148674 ENSG00000077935 SMC1B SMC1BETA|SMC1L2 structural maintenance of chromosomes 1B protein-coding 364-298 chr4 32607782 32607991 + 2 NA Intergenic L1M4|LINE|L1 256848 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 186-45 chr13 96814653 96814833 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 169429 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 431-127 chr2 41750437 41750738 + 2 NA Intergenic (AGACAT)n|Simple_repeat|Simple_repeat -126968 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 162-61 chr2 171863974 171864070 + 2 NA intron (NM_003705, intron 3 of 17) L2a|LINE|L2 30222 NM_003705 8604 Hs.470608 NM_003705 ENSG00000115840 SLC25A12 AGC1|ARALAR|EIEE39 solute carrier family 25 member 12 protein-coding 616-46 chr14 88976247 88976731 + 2 NA Intergenic MIRb|SINE|MIR 151838 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 432-170 chr3 13155398 13155664 + 2 NA Intergenic L1M4|LINE|L1 -82102 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 238-409 chr9 11271037 11271212 + 2 NA Intergenic L1ME1|LINE|L1 657918 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 275-57 chr11 11273358 11273578 + 2 NA intron (NM_001363464, intron 9 of 9) L1MA3|LINE|L1 79782 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 381-26 chr1 219397970 219398212 + 2 NA Intergenic L1PA13|LINE|L1 159233 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 247-429 chr9 38728840 38729016 + 2 NA Intergenic L1MEj|LINE|L1 107840 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 371-157 chr2 130522 130774 + 2 NA Intergenic Intergenic -84143 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 281-359 chr5 63993574 63993767 + 2 NA Intergenic L1MC4|LINE|L1 -31378 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 311-52 chr10 52132537 52132830 + 2 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 181445 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 424-227 chr5 108225214 108225504 + 2 NA intron (NM_001163315, intron 4 of 8) MLT1C|LTR|ERVL-MaLR 156739 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 427-99 chr18 13287544 13287930 + 2 NA intron (NM_181482, intron 2 of 5) Mam_R4|LINE|Dong-R4 9632 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 513-238 chr6 13366748 13367244 + 2 NA intron (NM_018988, intron 1 of 1) intron (NM_018988, intron 1 of 1) -38413 NM_001318805 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 352-173 chr16 74060056 74060235 + 2 NA Intergenic Intergenic 155376 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 268-65 chr11 45709013 45709185 + 2 NA Intergenic L2|LINE|L2 -13209 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 305-241 chr2 29741214 29741407 + 2 NA intron (NM_004304, intron 1 of 28) L1MC1|LINE|L1 180276 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 137-68 chr4 162240780 162240892 + 2 NA Intergenic L1MA5A|LINE|L1 -76802 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 268-13 chr1 106471395 106471599 + 2 NA Intergenic L1M2|LINE|L1 -346742 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 374-111 chr15 58764246 58764475 + 2 NA Intergenic HAL1|LINE|L1 6614 NR_135474 101928725 Hs.572321 NR_135474 ENSG00000245975 LOC101928725 - uncharacterized LOC101928725 ncRNA 308-333 chr4 60204238 60204498 + 2 NA Intergenic Intergenic -718251 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 295-217 chr2 81072704 81072957 + 2 NA Intergenic Intergenic 394116 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 370-276 chr20 61059358 61059639 + 2 NA Intergenic Intergenic -19566 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 260-84 chr11 96626243 96626419 + 2 NA Intergenic MER92C|LTR|ERV1 117906 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 315-53 chr10 57464346 57464593 + 2 NA Intergenic Intergenic -159910 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 376-190 chr2 101236164 101236518 + 2 NA Intergenic LTR12B|LTR|ERV1 -16545 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 165-18 chr11 90865504 90865590 + 2 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) 3655 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 903-39 chr8 96712733 96713373 + 2 NA intron (NM_016134, intron 1 of 7) THE1C-int|LTR|ERVL-MaLR 67811 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 324-298 chr2 219123032 219123278 + 2 NA intron (NM_024782, intron 5 of 7) intron (NM_024782, intron 5 of 7) 37710 NM_024782 79840 Hs.225988 NM_024782 ENSG00000187736 NHEJ1 XLF non-homologous end joining factor 1 protein-coding 350-406 chr5 118605138 118605425 + 2 NA intron (NR_104998, intron 1 of 4) intron (NR_104998, intron 1 of 4) 9093 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 478-130 chr2 11995030 11995322 + 2 NA Intergenic Intergenic -11940 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 342-295 chr21 20631973 20632237 + 2 NA Intergenic Intergenic 171003 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 294-373 chr5 46068754 46068914 + 2 NA Intergenic ALR/Alpha|Satellite|centr -372454 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 443-83 chr13 74207625 74207942 + 2 NA Intergenic Intergenic -23661 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 308-511 chr8 120650624 120650898 + 2 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -110492 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 566-135 chr3 163718580 163719094 + 2 NA Intergenic L1MC1|LINE|L1 -415536 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 299-112 chr12 114522106 114522299 + 2 NA Intergenic L1PA13|LINE|L1 -113760 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 272-220 chr2 170564857 170565077 + 2 NA intron (NM_001083615, intron 31 of 33) intron (NM_001083615, intron 31 of 33) 149600 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 303-447 chr8 62014884 62015135 + 2 NA Intergenic Intergenic 125170 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 399-295 chr7 145984395 145984781 + 2 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat -789683 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 499-212 chr5 139084531 139084967 + 2 NA intron (NM_022464, intron 3 of 9) L1HS|LINE|L1 113619 NM_022464 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 372-297 chr21 45046567 45046796 + 2 NA Intergenic L1MC1|LINE|L1 26530 NR_027292 728039 Hs.309203 NM_032653 ENSG00000235374 SSR4P1 C21orf122|PRED57|PRED90 signal sequence receptor subunit 4 pseudogene 1 pseudo 355-533 chr9 72635080 72635294 + 2 NA intron (NM_138691, intron 4 of 23) AluSx|SINE|Alu 113386 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 351-289 chr3 19306793 19307012 + 2 NA intron (NM_144633, intron 3 of 15) L1MA5A|LINE|L1 8029 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 336-287 chr2 126155126 126155307 + 2 NA Intergenic L1MC1|LINE|L1 -37231 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 191-80 chr17 62985855 62986019 + 2 NA intron (NM_025185, intron 1 of 25) L1M2c|LINE|L1 19702 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 530-271 chr9 24543010 24543383 + 2 NA TTS (NM_001271706) TTS (NM_001271706) 2480 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 352-140 chr14 51150603 51150780 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -54987 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 343-88 chr11 132612582 132612884 + 2 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 328431 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 227-182 chr2 132730592 132730796 + 2 NA intron (NM_207481, intron 15 of 17) intron (NM_207481, intron 15 of 17) -59168 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 308-496 chr8 90224907 90225063 + 2 NA intron (NR_051989, intron 1 of 3) intron (NR_051989, intron 1 of 3) 3497 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 365-375 chr7 57985766 57986068 + 2 NA Intergenic ALR/Alpha|Satellite|centr 535740 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 293-190 chr2 79077464 79077677 + 2 NA Intergenic L1M4|LINE|L1 10423 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 438-174 chr3 106832464 106832869 + 2 NA Intergenic LOR1-int|LTR|ERV1 407972 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 457-13 chr1 147777206 147777499 + 2 NA Intergenic Intergenic -3990 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 289-371 chr5 68938547 68938797 + 2 NA Intergenic L1PA13|LINE|L1 91255 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 193-52 chr13 92751112 92751256 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -29570 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 276-230 chr2 79608359 79608581 + 2 NA intron (NM_001282598, intron 1 of 17) L1MC4|LINE|L1 40889 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 660-11 chr10 76409763 76410199 + 2 NA intron (NM_001305581, intron 6 of 6) L2c|LINE|L2 -478063 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 597-44 chr13 31958499 31958887 + 2 NA intron (NR_027062, intron 3 of 3) intron (NR_027062, intron 3 of 3) 72946 NR_103839 100507099 Hs.536364 NR_103839 FRY-AS1 - FRY antisense RNA 1 ncRNA 343-45 chr10 23273715 23273929 + 2 NA intron (NM_001365862, intron 8 of 15) intron (NM_001365862, intron 8 of 15) -70135 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 268-378 chr7 84343361 84343560 + 2 NA Intergenic Intergenic -148671 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 690-106 chr9 36084100 36084664 + 2 NA intron (NM_021111, intron 8 of 20) AluSz|SINE|Alu 47469 NM_001316347 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 263-279 chr4 30810338 30810498 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 90049 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 466-283 chr8 132847239 132847545 + 2 NA non-coding (NR_156424, exon 19 of 19) non-coding (NR_156424, exon 19 of 19) -19566 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 274-28 chr1 239543037 239543237 + 2 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) -85936 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 202-194 chr4 158740208 158740380 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger -16898 NM_005038 5481 Hs.183958 NM_005038 ENSG00000171497 PPID CYP-40|CYPD peptidylprolyl isomerase D protein-coding 232-105 chr14 79172419 79172568 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -27489 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 140-4 chr1 194715408 194715521 + 2 NA Intergenic Intergenic 1373251 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 386-119 chr15 92241293 92241537 + 2 NA Intergenic L1MA5A|LINE|L1 -152466 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 295-221 chr2 115265098 115265297 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -44040 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 513-141 chr2 125736966 125737330 + 2 NA Intergenic L1MA9|LINE|L1 380837 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 305-110 chr12 14267440 14267667 + 2 NA Intergenic LTR84a|LTR|ERVL -98079 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 393-213 chr3 22533588 22533926 + 2 NA Intergenic L1MB5|LINE|L1 576618 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 267-285 chr4 33020195 33020364 + 2 NA Intergenic Intergenic 669241 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 480-323 chrX 93148611 93148915 + 2 NA Intergenic Intergenic -323860 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 462-146 chr2 143703447 143703755 + 2 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -233466 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 395-338 chr8 90659813 90660205 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -13926 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 308-432 chr6 121745697 121745978 + 2 NA Intergenic Intergenic 310191 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 268-11 chr1 102532993 102533180 + 2 NA Intergenic (TATCTC)n|Simple_repeat|Simple_repeat -535852 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 235-185 chr2 166461493 166461653 + 2 NA intron (NR_045628, intron 9 of 25) intron (NR_045628, intron 9 of 25) 25398 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 406-125 chr19 2852609 2852998 + 2 NA exon (NM_001172775, exon 4 of 4) exon (NM_001172775, exon 4 of 4) 11328 NM_152791 148254 Hs.47712 NM_152791 ENSG00000186300 ZNF555 - zinc finger protein 555 protein-coding 518-119 chr19 51863435 51863810 + 2 NA intron (NM_001370455, intron 5 of 6) L1MC4|LINE|L1 24314 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 246-294 chr4 61324774 61325017 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 122723 NM_001371342 233-367 chr8 50392122 50392292 + 2 NA intron (NR_135797, intron 2 of 20) L1MC3|LINE|L1 228076 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 290-403 chr7 7150626 7150776 + 2 NA Intergenic Intergenic -31914 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 460-40 chr10 116822065 116822408 + 2 NA intron (NM_001330164, intron 2 of 12) MIRc|SINE|MIR 5332 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 369-122 chr14 80050175 80050447 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -161108 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 227-124 chr16 56174295 56174430 + 2 NA intron (NR_027078, intron 2 of 4) L1MEc|LINE|L1 16732 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 439-53 chr11 59388194 59388596 + 2 NA Intergenic L1M2|LINE|L1 23936 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 450-135 chr2 36015934 36016324 + 2 NA Intergenic Intergenic 339441 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 218-54 chr11 79109969 79110169 + 2 NA intron (NM_001098816, intron 4 of 33) L2c|LINE|L2 292040 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 537-282 chrX 83661525 83661886 + 2 NA Intergenic L1PA13|LINE|L1 153415 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 397-274 chr6 48154231 48154577 + 2 NA Intergenic L1PREC2|LINE|L1 -85715 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 160-9 chr1 217307326 217307421 + 2 NA Intergenic Intergenic -169671 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 374-303 chr5 24954223 24954585 + 2 NA Intergenic Intergenic -113821 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 341-241 chr2 46928627 46928900 + 2 NA intron (NM_001288953, intron 2 of 20) AluJb|SINE|Alu -12461 NM_020458 57217 Hs.370603 NM_020458 ENSG00000068724 TTC7A GIDID|MINAT|TTC7 tetratricopeptide repeat domain 7A protein-coding 189-193 chr7 114104201 114104353 + 2 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 17950 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 480-258 chr6 108824148 108824490 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -24097 NM_001286609 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 392-341 chr8 139465877 139466235 + 2 NA Intergenic LTR85a|LTR|Gypsy? 237067 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 300-164 chr18 27744679 27744865 + 2 NA Intergenic MIR|SINE|MIR 291869 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 288-275 chr3 126594883 126595077 + 2 NA Intergenic L1MEf|LINE|L1 -36048 NR_130715 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 251-402 chr8 122523886 122524107 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 44648 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 431-165 chr21 33085068 33085438 + 2 NA Intergenic MER33|DNA|hAT-Charlie 15112 NM_138983 116448 Hs.56663 NM_138983 ENSG00000184221 OLIG1 BHLHB6|BHLHE21 oligodendrocyte transcription factor 1 protein-coding 261-244 chr3 94758176 94758384 + 2 NA Intergenic Intergenic -179983 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 120-23 chr16 60684931 60685012 + 2 NA Intergenic Intergenic -325178 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 316-523 chr7 83838276 83838574 + 2 NA Intergenic Intergenic -189286 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 291-203 chr2 14253440 14253650 + 2 NA intron (NR_103814, intron 2 of 3) L1ME2|LINE|L1 147413 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 288-387 chr6 162769511 162769724 + 2 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 41647 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 296-327 chr4 30343835 30344120 + 2 NA Intergenic Intergenic -376392 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 387-346 chr7 62891394 62891655 + 2 NA Intergenic ALR/Alpha|Satellite|centr 412532 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 293-420 chr8 5622421 5622634 + 2 NA Intergenic Intergenic -627613 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 316-191 chr16 8341971 8342239 + 2 NA Intergenic Intergenic 247733 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 367-217 chr2 121566055 121566420 + 2 NA intron (NM_015282, intron 2 of 38) intron (NM_015282, intron 2 of 38) 35357 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 434-2 chr1 17988953 17989197 + 2 NA Intergenic AluJr4|SINE|Alu -76582 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 256-205 chr2 114777019 114777199 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 56439 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 451-221 chr7 84256457 84256747 + 2 NA Intergenic Intergenic -61813 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 606-7 chr1 165270743 165271214 + 2 NA intron (NM_177398, intron 3 of 8) MLT1L|LTR|ERVL-MaLR 85263 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 434-233 chr5 141149693 141149931 + 2 NA promoter-TSS (NM_001303145) promoter-TSS (NM_001303145) -210 NM_018939 56130 Hs.283085 NM_018939 ENSG00000113211 PCDHB6 PCDH-BETA6 protocadherin beta 6 protein-coding 225-106 chr15 78535056 78535225 + 2 NA 3' UTR (NM_001013619, exon 5 of 5) 3' UTR (NM_001013619, exon 5 of 5) -5265 NM_001330673 5685 Hs.251531 NM_002789 ENSG00000041357 PSMA4 HC9|HsT17706|PSC9 proteasome subunit alpha 4 protein-coding 205-101 chr15 70998664 70998826 + 2 NA intron (NM_017691, intron 11 of 15) L1M4|LINE|L1 106302 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 316-410 chr4 120671296 120671518 + 2 NA Intergenic L1MEf|LINE|L1 251459 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 541-87 chr17 20118108 20118463 + 2 NA intron (NM_001033553, intron 3 of 14) L1ME4b|LINE|L1 31263 NM_152904 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 359-473 chr8 81426226 81426470 + 2 NA Intergenic Intergenic 21091 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 401-27 chr10 48966688 48967016 + 2 NA intron (NM_020945, intron 55 of 61) intron (NM_020945, intron 55 of 61) 18735 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 398-343 chr8 46072552 46072787 + 2 NA Intergenic ALR/Alpha|Satellite|centr 544974 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 380-166 chr19 37741315 37741539 + 2 NA intron (NM_001172690, intron 4 of 4) AluJr|SINE|Alu -21666 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 618-4 chr1 72699192 72699709 + 2 NA Intergenic Intergenic -416911 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 324-460 chr6 48402711 48402980 + 2 NA Intergenic Intergenic -334156 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 123-6 chr10 44470772 44470841 + 2 NA Intergenic Intergenic -85709 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 170-75 chr2 160895946 160896104 + 2 NA Intergenic Intergenic -240930 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 585-127 chr5 85852732 85853204 + 2 NA Intergenic Intergenic -429476 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 360-474 chr8 122305995 122306303 + 2 NA Intergenic LTR16E2|LTR|ERVL 262495 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 221-317 chr9 19619710 19619857 + 2 NA intron (NM_020344, intron 2 of 9) intron (NM_020344, intron 2 of 9) 167236 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 382-364 chr6 125411823 125412092 + 2 NA Intergenic Intergenic -109990 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 389-215 chr21 35274772 35275005 + 2 NA Intergenic L2a|LINE|L2 -225590 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 200-32 chr10 52297401 52297567 + 2 NA non-coding (NR_038277, exon 6 of 6) non-coding (NR_038277, exon 6 of 6) 16644 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 277-415 chr8 88616894 88617126 + 2 NA Intergenic L1ME3E|LINE|L1 -289527 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 344-492 chr8 108317876 108318090 + 2 NA Intergenic L1MC5|LINE|L1 -69266 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 851-46 chr8 131516829 131517557 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -386900 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 263-68 chr11 23147367 23147573 + 2 NA Intergenic Intergenic 271720 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 587-177 chr9 108196659 108197217 + 2 NA Intergenic Intergenic 659048 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 283-458 chr9 29011480 29011713 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -122641 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 348-570 chrX 70036768 70036956 + 2 NA 3' UTR (NM_001399, exon 8 of 8) 3' UTR (NM_001399, exon 8 of 8) 13076 NM_001002254 158835 Hs.661507 NM_001002254 ENSG00000147160 AWAT2 ARAT|DC4|DGAT2L4|MFAT|WS acyl-CoA wax alcohol acyltransferase 2 protein-coding 425-207 chr4 70003505 70003888 + 2 NA Intergenic Intergenic 7730 NM_001009181 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 340-137 chr13 99779501 99779816 + 2 NA intron (NR_120421, intron 1 of 4) MER5C1|DNA|hAT-Charlie -50657 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 469-269 chr7 71787154 71787485 + 2 NA 3' UTR (NM_031468, exon 7 of 7) 3' UTR (NM_031468, exon 7 of 7) -479549 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 349-138 chr12 118457574 118457758 + 2 NA Intergenic MER34A|LTR|ERV1 81111 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 288-258 chr3 51193110 51193321 + 2 NA intron (NM_004947, intron 12 of 52) L1M2|LINE|L1 -192076 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 491-206 chr5 38738515 38738913 + 2 NA intron (NR_109951, intron 3 of 3) intron (NR_109951, intron 3 of 3) -18441 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 416-117 chr14 52184066 52184342 + 2 NA Intergenic L1MD|LINE|L1 -83494 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 291-198 chr19 51222139 51222343 + 2 NA Intergenic L1ME1|LINE|L1 -2839 NM_001177608 945 Hs.83731 NM_001772 ENSG00000105383 CD33 SIGLEC-3|SIGLEC3|p67 CD33 molecule protein-coding 283-404 chr7 3439489 3439688 + 2 NA intron (NM_152744, intron 1 of 44) L4_A_Mam|LINE|RTE-X 138336 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 219-79 chr12 114292452 114292606 + 2 NA Intergenic MIRb|SINE|MIR -50759 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 188-162 chr5 30430662 30430809 + 2 NA Intergenic L1MCa|LINE|L1 550175 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 339-621 chrX 45558475 45558807 + 2 NA Intergenic L1P4|LINE|L1 53253 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 361-400 chr6 147161046 147161355 + 2 NA intron (NR_132442, intron 1 of 2) intron (NR_132442, intron 1 of 2) 2275 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 253-416 chr8 121802162 121802405 + 2 NA Intergenic L2b|LINE|L2 -160843 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 265-61 chr11 38189380 38189636 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 250907 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 262-410 chr7 124280241 124280453 + 2 NA Intergenic Intergenic 71749 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 295-470 chr8 89491979 89492191 + 2 NA Intergenic L2c|LINE|L2 265626 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 348-199 chr18 6992967 6993243 + 2 NA intron (NM_005559, intron 35 of 62) intron (NM_005559, intron 35 of 62) 38428 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 285-347 chr5 104213475 104213629 + 2 NA Intergenic Intergenic -650763 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 485-159 chr20 6921374 6921834 + 2 NA Intergenic Intergenic 153918 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 360-18 chr1 209151890 209152089 + 2 NA Intergenic MER39|LTR|ERV1 -173467 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 226-97 chr14 82769360 82769565 + 2 NA Intergenic Intergenic 126830 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 476-240 chr6 104485877 104486321 + 2 NA Intergenic Intergenic 373447 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 424-44 chr11 72384304 72384662 + 2 NA intron (NM_001258393, intron 2 of 14) L1M1|LINE|L1 50048 NM_001258392 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 329-124 chr12 61450752 61451049 + 2 NA Intergenic Intergenic 741939 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 384-366 chr8 67858923 67859175 + 2 NA Intergenic L1MCa|LINE|L1 -92997 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 328-453 chr5 58801934 58802153 + 2 NA intron (NM_138453, intron 3 of 4) intron (NM_138453, intron 3 of 4) 197855 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 347-33 chr1 219261713 219261990 + 2 NA Intergenic L1PBa|LINE|L1 86882 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 406-253 chr5 164705409 164705789 + 2 NA Intergenic Intergenic 235320 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 325-150 chr13 57764427 57764676 + 2 NA Intergenic L3|LINE|CR1 132807 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 259-398 chr8 84590932 84591176 + 2 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -114873 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 542-188 chr6 40929911 40930288 + 2 NA intron (NR_110873, intron 1 of 5) L3|LINE|CR1 93181 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 391-368 chr8 131184209 131184592 + 2 NA Intergenic Intergenic -143491 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 383-173 chr19 58193716 58193941 + 2 NA intron (NM_133502, intron 4 of 7) AluJo|SINE|Alu 10767 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 243-354 chr5 46287271 46287426 + 2 NA Intergenic ALR/Alpha|Satellite|centr -590968 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 314-164 chr14 44883986 44884162 + 2 NA Intergenic L1MA3|LINE|L1 -13201 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 231-276 chr5 30869380 30869573 + 2 NA Intergenic Intergenic -324210 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 495-2 chr1 17154963 17155424 + 2 NA Intergenic Intergenic -34596 NR_148993 400743 Hs.522935 NR_148993 ENSG00000204362 LINC02783 - long intergenic non-protein coding RNA 2783 ncRNA 458-167 chr3 34993983 34994335 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 399864 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 323-190 chr17 72782146 72782331 + 2 NA intron (NM_001352692, intron 6 of 9) MLT1C|LTR|ERVL-MaLR -141766 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 248-419 chr8 140038581 140038767 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 61861 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 184-49 chr12 126636016 126636119 + 2 NA Intergenic Intergenic 54251 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 230-325 chr6 141638257 141638447 + 2 NA Intergenic L1MC5|LINE|L1 450447 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 548-169 chr4 103833323 103833642 + 2 NA Intergenic L1PA11|LINE|L1 -113497 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 435-162 chr3 176571772 176572137 + 2 NA Intergenic Intergenic 56851 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 366-453 chr8 132496656 132496945 + 2 NA Intergenic L1ME4a|LINE|L1 -15705 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 619-70 chr2 135265275 135265622 + 2 NA intron (NM_001286569, intron 13 of 21) intron (NM_001286569, intron 13 of 21) 128820 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 330-349 chr3 88538234 88538470 + 2 NA Intergenic Intergenic 199896 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 526-139 chr2 145919783 145920257 + 2 NA Intergenic Intergenic -667037 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 208-179 chr4 30569720 30569903 + 2 NA Intergenic Intergenic -150558 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 372-355 chr4 42508004 42508270 + 2 NA intron (NM_001105529, intron 21 of 35) AluSz|SINE|Alu 110649 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 304-198 chr17 70017938 70018229 + 2 NA Intergenic Intergenic -33188 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 239-67 chr12 10666855 10667023 + 2 NA intron (NM_018423, intron 1 of 10) intron (NM_018423, intron 1 of 10) 7113 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 453-24 chr10 53033784 53034186 + 2 NA Intergenic Intergenic -262285 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 271-153 chr15 95699918 95700135 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 266933 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 351-507 chr8 142111637 142111925 + 2 NA Intergenic Intergenic -64558 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 303-48 chr10 79955591 79955760 + 2 NA Intergenic Intergenic -6570 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 373-273 chr3 196582507 196582857 + 2 NA intron (NM_001105573, intron 2 of 2) intron (NM_001105573, intron 2 of 2) -14008 NM_001345914 348793 Hs.385865 NM_182627 ENSG00000185798 WDR53 - WD repeat domain 53 protein-coding 242-278 chr4 124340955 124341142 + 2 NA Intergenic Intergenic 217386 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 348-237 chr2 139377125 139377388 + 2 NA Intergenic Intergenic 479932 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 391-381 chr9 132631102 132631407 + 2 NA intron (NM_001322341, intron 16 of 20) intron (NM_001322341, intron 16 of 20) 32072 NM_001322343 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding 227-405 chr9 114338904 114339069 + 2 NA intron (NM_001317950, intron 21 of 21) intron (NM_001317950, intron 21 of 21) 9197 NM_000608 5005 Hs.719954 NM_000608 ENSG00000228278 ORM2 AGP-B|AGP-B'|AGP2 orosomucoid 2 protein-coding 302-260 chr21 27288669 27288926 + 2 NA Intergenic Intergenic -321709 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 382-312 chr5 6099830 6100162 + 2 NA Intergenic Intergenic 237296 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 830-20 chr19 24338024 24338482 + 2 NA Intergenic ALR/Alpha|Satellite|centr -174806 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 175-86 chr2 179003979 179004127 + 2 NA intron (NM_001316745, intron 2 of 11) intron (NM_001316745, intron 2 of 11) 46084 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 517-59 chr12 47322622 47322974 + 2 NA Intergenic HAL1ME|LINE|L1 -15399 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 279-439 chr9 75532004 75532220 + 2 NA Intergenic Intergenic -358532 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 364-153 chr16 26389843 26390097 + 2 NA Intergenic L1MA10|LINE|L1 364733 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 147-40 chr2 66081561 66081701 + 2 NA Intergenic Intergenic 276697 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 259-315 chr5 60142414 60142606 + 2 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) 230153 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 298-43 chr10 52416091 52416268 + 2 NA Intergenic Intergenic 39093 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 507-102 chr17 34500121 34500612 + 2 NA Intergenic L2a|LINE|L2 79003 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 549-182 chr6 95261058 95261478 + 2 NA Intergenic HUERS-P2-int|LTR|ERV1 316183 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 275-167 chr18 68812451 68812724 + 2 NA intron (NM_024781, intron 1 of 7) intron (NM_024781, intron 1 of 7) 14507 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 243-24 chr1 213823884 213824118 + 2 NA intron (NR_037850, intron 5 of 5) intron (NR_037850, intron 5 of 5) -100748 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 118-24 chr2 35103905 35103964 + 2 NA Intergenic Intergenic -367471 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 316-607 chrX 86029148 86029442 + 2 NA intron (NM_001145414, intron 1 of 4) intron (NM_001145414, intron 1 of 4) 18011 NM_001362518 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM Rab escort protein protein-coding 282-397 chr6 39437237 39437426 + 2 NA intron (NM_001289021, intron 12 of 21) L1PB3|LINE|L1 -5941 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 298-435 chr7 54919213 54919477 + 2 NA Intergenic L1MCa|LINE|L1 -99672 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 132-19 chr12 73433561 73433651 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 274416 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 446-100 chr14 48804387 48804700 + 2 NA Intergenic LTR101_Mam|LTR|ERVL 781837 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 309-374 chr3 192684657 192684936 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 42745 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 354-98 chr11 133997939 133998119 + 2 NA Intergenic Intergenic -34243 NR_027276 100128239 Hs.423734 NR_027276 ENSG00000204241 LINC02731 - long intergenic non-protein coding RNA 2731 ncRNA 293-21 chr1 213992615 213992881 + 2 NA intron (NM_002763, intron 1 of 4) intron (NM_002763, intron 1 of 4) 4215 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 294-314 chr3 174063250 174063500 + 2 NA intron (NM_001365928, intron 4 of 6) L1MEf|LINE|L1 -142579 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 415-284 chr8 89565875 89566135 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 191706 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 579-136 chr6 19954907 19955340 + 2 NA Intergenic Intergenic 117753 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 335-222 chr19 34613914 34614139 + 2 NA intron (NR_027620, intron 1 of 3) L1MA5|LINE|L1 -19441 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 524-94 chr18 7101723 7102153 + 2 NA intron (NM_005559, intron 1 of 62) AluJo|SINE|Alu 15859 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 156-42 chr16 76742462 76742586 + 2 NA Intergenic L1MB4|LINE|L1 107526 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 362-94 chr11 86771799 86772096 + 2 NA Intergenic Intergenic -19124 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 246-303 chr4 105490564 105490796 + 2 NA Intergenic Intergenic -16610 NM_176866 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 379-175 chr2 159752056 159752391 + 2 NA intron (NM_001282805, intron 7 of 11) intron (NM_001282805, intron 7 of 11) 18259 NM_001282807 64844 Hs.529272 NM_022826 ENSG00000136536 MARCH7 AXO|AXOT|MARCH-VII|RNF177 membrane associated ring-CH-type finger 7 protein-coding 378-33 chr1 196193413 196193615 + 2 NA Intergenic AluSx3|SINE|Alu -104799 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 230-22 chr1 180904591 180904786 + 2 NA Intergenic L1ME3D|LINE|L1 -8209 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 369-142 chr15 97639094 97639415 + 2 NA Intergenic L1M5|LINE|L1 -78556 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 321-348 chr21 30950459 30950656 + 2 NA Intergenic L1M4|LINE|L1 -68977 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 307-318 chr3 162574134 162574399 + 2 NA Intergenic L1MC4|LINE|L1 729035 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 444-251 chr8 21000643 21001048 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 26859 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 300-240 chr20 38338390 38338606 + 2 NA TTS (NM_001725) TTS (NM_001725) -7984 NM_004139 3929 Hs.154078 NM_004139 ENSG00000129988 LBP BPIFD2 lipopolysaccharide binding protein protein-coding 532-159 chr3 25648192 25648684 + 2 NA intron (NM_001330700, intron 1 of 35) L1MB2|LINE|L1 15934 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 231-88 chr14 25213255 25213420 + 2 NA Intergenic Intergenic -163040 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 435-166 chr4 43187180 43187536 + 2 NA Intergenic Intergenic 294092 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 347-73 chr11 63192015 63192269 + 2 NA intron (NM_199352, intron 4 of 8) L1PA13|LINE|L1 37510 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 189-102 chr2 197362842 197363001 + 2 NA Intergenic Intergenic -52141 NM_001367497 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 564-174 chr6 102868128 102868456 + 2 NA Intergenic L1M3a|LINE|L1 1469307 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 237-11 chr1 98290288 98290477 + 2 NA Intergenic L1PA16|LINE|L1 79671 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 204-174 chr21 26727212 26727376 + 2 NA Intergenic L1PB3|LINE|L1 118115 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 333-579 chr8 104987003 104987292 + 2 NA Intergenic Intergenic -331291 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 227-383 chr8 142921795 142922013 + 2 NA Intergenic Intergenic -4061 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 249-398 chr8 5917292 5917495 + 2 NA Intergenic Intergenic 489155 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 401-339 chr9 8403450 8403831 + 2 NA intron (NM_130392, intron 21 of 30) intron (NM_130392, intron 21 of 30) 330306 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 326-488 chr7 35767696 35767929 + 2 NA intron (NR_120511, intron 3 of 5) L1PA7|LINE|L1 32813 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 696-34 chr12 98380503 98380991 + 2 NA Intergenic Intergenic 76398 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 164-59 chr2 213165970 213166098 + 2 NA intron (NR_146974, intron 1 of 3) intron (NR_146974, intron 1 of 3) 1676 NR_146974 105373863 Hs.258045 NR_146974 LINC01953 - long intergenic non-protein coding RNA 1953 ncRNA 245-180 chr2 17086927 17087129 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -421194 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 262-8 chr1 65976691 65976942 + 2 NA intron (NM_002600, intron 3 of 16) MSTA|LTR|ERVL-MaLR -15800 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 570-168 chr5 171296990 171297478 + 2 NA intron (NM_022897, intron 27 of 27) L2a|LINE|L2 -12014 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 546-174 chr4 87019762 87020193 + 2 NA intron (NM_001313960, intron 1 of 17) MER21A|LTR|ERVL 12976 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 349-244 chr2 25054759 25054933 + 2 NA intron (NM_001319099, intron 1 of 22) intron (NM_001319099, intron 1 of 22) 12383 NM_001319099 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 398-45 chr10 86679113 86679333 + 2 NA intron (NM_001368066, intron 2 of 14) MLT1J2|LTR|ERVL-MaLR 10659 NM_001080116 11155 Hs.657271 NM_007078 ENSG00000122367 LDB3 CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP LIM domain binding 3 protein-coding 267-354 chr5 145218368 145218570 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 616873 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 411-220 chr5 9643213 9643518 + 2 NA intron (NR_027112, intron 11 of 12) Tigger3c|DNA|TcMar-Tigger -13014 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 160-59 chr3 17788759 17788864 + 2 NA Intergenic L1PA16|LINE|L1 45867 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 338-54 chr10 36072971 36073201 + 2 NA Intergenic Intergenic 294784 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 359-176 chr16 83015653 83015981 + 2 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) -25519 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 533-230 chr8 92005401 92005921 + 2 NA intron (NM_004349, intron 4 of 10) intron (NM_004349, intron 4 of 10) 12019 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 425-69 chr12 45661357 45661680 + 2 NA Intergenic AluJb|SINE|Alu 66403 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 215-253 chr5 55793949 55794121 + 2 NA intron (NM_024415, intron 17 of 21) intron (NM_024415, intron 17 of 21) 27150 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 150-39 chr15 25297076 25297159 + 2 NA intron (NR_146177, intron 146 of 147) L1M4|LINE|L1 18774 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 240-97 chr12 4834438 4834632 + 2 NA intron (NM_002235, intron 1 of 1) intron (NM_002235, intron 1 of 1) 25359 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 308-344 chr4 82061776 82062072 + 2 NA Intergenic Intergenic 312067 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 334-131 chr13 83650024 83650315 + 2 NA Intergenic Intergenic 232224 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 404-318 chr8 92527240 92527543 + 2 NA Intergenic L1MA5|LINE|L1 128103 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 392-129 chr19 12495945 12496316 + 2 NA Intergenic LTR54|LTR|ERV1 -11314 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 168-117 chr8 105152341 105152446 + 2 NA Intergenic L1ME4a|LINE|L1 -166045 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 318-497 chr6 160434378 160434677 + 2 NA intron (NM_021977, intron 5 of 10) MIR|SINE|MIR 76597 NR_028093 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 338-475 chr6 126492939 126493235 + 2 NA Intergenic L1MA5A|LINE|L1 8456 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 518-267 chr7 12232364 12232786 + 2 NA 3' UTR (NM_018374, exon 9 of 9) 3' UTR (NM_018374, exon 9 of 9) 21281 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 355-146 chr13 90627468 90627648 + 2 NA Intergenic Intergenic 134270 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 328-399 chr4 58098617 58098891 + 2 NA Intergenic Intergenic 437574 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 338-433 chr5 59685313 59685538 + 2 NA intron (NM_001165899, intron 3 of 16) L3b|LINE|CR1 18278 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 239-330 chr5 123593960 123594139 + 2 NA intron (NM_001364145, intron 8 of 10) MIRb|SINE|MIR 48632 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 227-108 chr14 62321075 62321243 + 2 NA Intergenic Intergenic -181186 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 356-239 chr2 59681059 59681297 + 2 NA Intergenic Intergenic 463470 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 274-208 chr2 76254792 76255039 + 2 NA Intergenic L1MEd|LINE|L1 -544000 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 303-61 chr10 129067724 129067919 + 2 NA Intergenic Intergenic 154988 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 600-14 chr10 108422890 108423275 + 2 NA Intergenic L1MA8|LINE|L1 -353789 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 400-229 chr3 152718295 152718602 + 2 NA Intergenic MIRb|SINE|MIR -116683 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 490-94 chr14 89587492 89587784 + 2 NA intron (NM_001085471, intron 1 of 6) AluSz|SINE|Alu 11422 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 322-98 chr11 98994038 98994270 + 2 NA Intergenic Intergenic -26795 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 454-246 chr4 160796244 160796587 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -1018631 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 282-505 chrX 142667722 142667892 + 2 NA Intergenic L1MA9|LINE|L1 -358121 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 400-11 chr1 90096377 90096721 + 2 NA Intergenic L1PA4|LINE|L1 101439 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 301-100 chr12 95720555 95720712 + 2 NA intron (NM_001329701, intron 3 of 9) intron (NM_001329701, intron 3 of 9) 69562 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 326-104 chr11 82152519 82152762 + 2 NA intron (NR_120571, intron 3 of 7) L1ME2z|LINE|L1 251273 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 436-92 chr15 76622191 76622552 + 2 NA intron (NR_148227, intron 21 of 32) intron (NR_148227, intron 21 of 32) 35724 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 347-503 chr8 67879574 67879891 + 2 NA Intergenic Intergenic -72314 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 234-396 chr8 139846909 139847107 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -143885 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 496-95 chr14 90184989 90185351 + 2 NA 3' UTR (NM_022054, exon 2 of 2) 3' UTR (NM_022054, exon 2 of 2) -71383 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 328-634 chrX 88348754 88348923 + 2 NA Intergenic L1PB3|LINE|L1 -398387 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 361-388 chr6 61610777 61611082 + 2 NA intron (NR_146870, intron 13 of 15) intron (NR_146870, intron 13 of 15) 36799 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 257-382 chr7 37968273 37968485 + 2 NA Intergenic MIRc|SINE|MIR 47060 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 314-284 chr2 75125710 75125944 + 2 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 35015 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 299-135 chr14 60836731 60837008 + 2 NA intron (NM_002431, intron 6 of 7) L1PA7|LINE|L1 102108 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 331-302 chr2 205005732 205005944 + 2 NA intron (NM_205863, intron 3 of 21) L1PB2|LINE|L1 460363 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 370-433 chr8 51008789 51009021 + 2 NA Intergenic L1MC2|LINE|L1 800540 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 207-261 chr6 149097995 149098187 + 2 NA Intergenic L1PB4|LINE|L1 -65430 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 370-173 chr16 72974334 72974546 + 2 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 73688 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 300-493 chr9 120216846 120217010 + 2 NA Intergenic L2a|LINE|L2 28122 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 557-173 chr6 140614010 140614371 + 2 NA Intergenic Intergenic -69624 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 458-33 chr11 22589997 22590308 + 2 NA Intergenic Intergenic 35689 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 141-55 chr3 79641189 79641294 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 126757 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 148-35 chr17 34686852 34686934 + 2 NA Intergenic Intergenic 106144 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 437-130 chr2 66972648 66973043 + 2 NA Intergenic L1MB5|LINE|L1 -50355 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 433-151 chr20 15759250 15759612 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 163883 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 237-198 chr2 180642359 180642542 + 2 NA Intergenic L1MA2|LINE|L1 -49654 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 366-284 chr3 137196328 137196594 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 238478 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 259-267 chr3 177456352 177456546 + 2 NA intron (NR_047568, intron 1 of 3) intron (NR_047568, intron 1 of 3) 14528 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 286-184 chr19 57706004 57706173 + 2 NA intron (NR_110975, intron 1 of 4) LTR53|LTR|ERVL 3116 NR_110974 7710 Hs.646378 NM_003444 ENSG00000179909 ZNF154 pHZ-92 zinc finger protein 154 protein-coding 368-91 chr11 117214326 117214585 + 2 NA intron (NM_004716, intron 12 of 16) intron (NM_004716, intron 12 of 16) -12541 NR_045215 100652768 Hs.732365 NR_045215 LOC100652768 - uncharacterized LOC100652768 ncRNA 312-431 chr5 118970025 118970235 + 2 NA intron (NM_173666, intron 1 of 5) L1PA10|LINE|L1 -4456 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 314-563 chr8 59898104 59898346 + 2 NA Intergenic Intergenic 383175 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 667-78 chr4 74071422 74071937 + 2 NA Intergenic L1ME3D|LINE|L1 -16280 NR_026769 10895 Hs.3134 NM_006692 ENSG00000248848 PPBPP2 PPBPL2|SPBPBP pro-platelet basic protein pseudogene 2 pseudo 383-373 chr8 59364310 59364501 + 2 NA Intergenic Intergenic 245195 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 186-66 chr18 24864426 24864583 + 2 NA Intergenic Intergenic 123475 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 308-450 chr7 11683917 11684104 + 2 NA intron (NM_015204, intron 1 of 26) L1PA17|LINE|L1 148188 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 232-411 chrX 69968743 69968949 + 2 NA intron (NM_001005609, intron 2 of 7) intron (NM_001005609, intron 2 of 7) -54011 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 561-98 chr2 79564759 79565158 + 2 NA intron (NM_001282598, intron 1 of 17) L2a|LINE|L2 41775 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 261-99 chr14 45164792 45164983 + 2 NA intron (NM_001308133, intron 9 of 21) intron (NM_001308133, intron 9 of 21) 28948 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 224-59 chr12 10683666 10683846 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -9704 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 286-309 chr4 38837738 38837986 + 2 NA intron (NM_006068, intron 1 of 1) L1MA4|LINE|L1 18955 NM_006068 10333 Hs.575090 NM_006068 ENSG00000174130 TLR6 CD286 toll like receptor 6 protein-coding 227-279 chr5 34501218 34501396 + 2 NA Intergenic MER97a|DNA|hAT-Tip100 -155021 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 366-80 chr11 70511360 70511581 + 2 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) 112941 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 431-254 chr6 121921942 121922238 + 2 NA Intergenic Intergenic -477461 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 363-40 chr10 17529899 17530101 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -75405 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 271-139 chr14 72116420 72116606 + 2 NA intron (NM_001370288, intron 2 of 16) MER20|DNA|hAT-Charlie 182986 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 390-215 chr20 57759869 57760177 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -48487 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 247-95 chr12 98639529 98639724 + 2 NA intron (NM_201612, intron 1 of 2) intron (NM_201612, intron 1 of 2) 5162 NM_201612 121457 Hs.252543 NM_153687 ENSG00000166130 IKBIP IKIP IKBKB interacting protein protein-coding 307-288 chr22 49578212 49578399 + 2 NA intron (NR_110523, intron 1 of 4) L1M5|LINE|L1 -34839 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 283-162 chr16 58371597 58371837 + 2 NA Intergenic MER47B|DNA|TcMar-Tigger -20754 NM_022770 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 283-48 chr10 37886483 37886730 + 2 NA Intergenic Intergenic -28503 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 607-41 chr14 61880730 61881260 + 2 NA intron (NM_001367656, intron 1 of 7) L1ME3A|LINE|L1 -46700 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 335-352 chr3 94425178 94425434 + 2 NA Intergenic MIR|SINE|MIR 362245 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 234-247 chr3 97936703 97936892 + 2 NA exon (NM_153605, exon 19 of 22) exon (NM_153605, exon 19 of 22) 35634 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 338-302 chr20 55200242 55200498 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -222673 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 331-543 chr8 135253299 135253523 + 2 NA intron (NR_120396, intron 1 of 4) LTR1B1|LTR|ERV1 19280 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1210-2 chr10 52512215 52513078 + 2 NA Intergenic L1PB1|LINE|L1 -42113 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 338-7 chr1 58144277 58144464 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 106133 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 461-140 chr2 119846812 119847200 + 2 NA intron (NM_002830, intron 2 of 26) L1M4b|LINE|L1 87084 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 348-537 chr8 127582151 127582434 + 2 NA Intergenic Intergenic -100153 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 283-329 chr4 73966094 73966289 + 2 NA Intergenic L1M2|LINE|L1 15836 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 557-162 chr5 103320002 103320490 + 2 NA Intergenic MIR|SINE|MIR 60822 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 472-208 chr3 112942138 112942458 + 2 NA intron (NM_138940, intron 1 of 2) L1MC1|LINE|L1 32805 NM_138940 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 571-188 chr9 82019363 82019782 + 2 NA Intergenic L1M6|LINE|L1 30800 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 250-22 chr1 177372939 177373167 + 2 NA Intergenic Intergenic 21467 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 328-55 chr10 83947070 83947259 + 2 NA Intergenic L1MB1|LINE|L1 -192345 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 261-106 chr14 62850091 62850330 + 2 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 195248 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 332-100 chr11 86595097 86595319 + 2 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 76990 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 232-363 chr7 113165722 113165882 + 2 NA Intergenic L2a|LINE|L2 -47220 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 224-53 chr11 105131897 105132057 + 2 NA Intergenic Intergenic 7792 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 172-96 chr4 107928724 107928871 + 2 NA intron (NR_125929, intron 1 of 6) intron (NR_125929, intron 1 of 6) -2752 NM_183075 113612 Hs.109087 NM_183075 ENSG00000155016 CYP2U1 P450TEC|SPG49|SPG56 cytochrome P450 family 2 subfamily U member 1 protein-coding 888-9 chr12 127672565 127673225 + 2 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -17307 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 117-26 chr22 49248135 49248218 + 2 NA Intergenic L1MEc|LINE|L1 295290 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 346-381 chr5 22824677 22824928 + 2 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 28542 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 471-228 chr6 68086199 68086629 + 2 NA Intergenic Intergenic 31063 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 315-444 chr7 60019416 60019574 + 2 NA Intergenic ALR/Alpha|Satellite|centr 2569318 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 420-100 chr17 52550929 52551182 + 2 NA Intergenic Intergenic 160533 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 257-272 chr3 106417819 106417980 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -548498 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 340-519 chr8 12889311 12889500 + 2 NA Intergenic L1ME3|LINE|L1 -56268 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 365-205 chr2 130967748 130968041 + 2 NA intron (NM_001367493, intron 4 of 13) MER77|LTR|ERVL 125268 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 219-196 chr20 7612772 7612929 + 2 NA Intergenic L1MC3|LINE|L1 241242 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 223-259 chr4 144391174 144391332 + 2 NA Intergenic L1MEf|LINE|L1 -250535 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 309-9 chr1 87890742 87890957 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -519194 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 295-65 chr11 23570306 23570557 + 2 NA Intergenic Intergenic -151241 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 204-252 chr6 76873418 76873579 + 2 NA Intergenic L1MEc|LINE|L1 -279875 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 340-216 chr18 46383474 46383660 + 2 NA intron (NM_001256758, intron 1 of 5) AluY|SINE|Alu 49343 NR_046357 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 214-347 chr8 139963703 139963910 + 2 NA intron (NM_001160372, intron 19 of 22) L1M5|LINE|L1 136729 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 491-200 chr5 7352840 7353192 + 2 NA Intergenic Intergenic -5039 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 417-196 chr4 42908334 42908616 + 2 NA intron (NM_001080476, intron 1 of 3) ERV3-16A3_I-int|LTR|ERVL 15209 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 457-168 chr3 181355555 181355925 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 86746 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 443-116 chr16 77865299 77865593 + 2 NA intron (NM_020927, intron 4 of 8) intron (NM_020927, intron 4 of 8) 76882 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 436-215 chr4 92363369 92363658 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 59114 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 549-86 chr18 36573250 36573627 + 2 NA intron (NM_001281740, intron 5 of 28) AluJb|SINE|Alu 89980 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 234-221 chr21 40527254 40527416 + 2 NA intron (NR_073202, intron 3 of 32) MLT1H|LTR|ERVL-MaLR 103432 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 360-13 chr1 163322839 163323101 + 2 NA intron (NM_145697, intron 1 of 13) intron (NM_145697, intron 1 of 13) 1016 NM_031423 83540 Hs.651950 NM_031423 ENSG00000143228 NUF2 CDCA1|CT106|NUF2R NUF2 component of NDC80 kinetochore complex protein-coding 149-77 chr4 64852281 64852389 + 2 NA Intergenic Intergenic 152165 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 163-102 chr5 27182863 27182985 + 2 NA Intergenic Intergenic -144338 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 217-150 chr17 54249404 54249564 + 2 NA Intergenic Intergenic 426557 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 674-18 chr11 90534682 90535104 + 2 NA intron (NR_104190, intron 1 of 6) FLAM_A|SINE|Alu 20964 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 154-41 chr17 63268661 63268762 + 2 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 171556 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 187-4 chr1 40453886 40454048 + 2 NA intron (NM_001369565, intron 2 of 5) intron (NM_001369565, intron 2 of 5) 3491 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 434-165 chr20 52164586 52164868 + 2 NA exon (NM_022088, exon 3 of 5) exon (NM_022088, exon 3 of 5) 27052 NM_022088 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 557-205 chr8 122204831 122205263 + 2 NA Intergenic L1MB5|LINE|L1 363597 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 443-94 chr14 60312325 60312730 + 2 NA Intergenic Intergenic -10669 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 375-243 chr21 20840564 20840905 + 2 NA Intergenic Intergenic -37626 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 140-53 chr4 70152822 70152912 + 2 NA Intergenic Intergenic -1370 NM_214711 401137 Hs.518795 NM_214711 ENSG00000187533 PRR27 C4orf40 proline rich 27 protein-coding 302-5 chr1 41943844 41944133 + 2 NA intron (NR_038261, intron 1 of 3) L1MB3|LINE|L1 -25066 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 451-231 chr8 101957494 101957773 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -26799 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 239-4 chr1 65776610 65776758 + 2 NA Intergenic MLT2B1|LTR|ERVL -15826 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 609-45 chr18 61027194 61027730 + 2 NA Intergenic Intergenic -305968 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 321-79 chr10 111700976 111701247 + 2 NA Intergenic Intergenic 482654 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 460-142 chr2 81131427 81131779 + 2 NA Intergenic Intergenic 335343 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 328-411 chr4 91938509 91938723 + 2 NA Intergenic L1M3|LINE|L1 338686 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 422-192 chr3 104853064 104853464 + 2 NA Intergenic Intergenic -513449 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 262-267 chr22 36657438 36657597 + 2 NA intron (NM_006078, intron 1 of 3) intron (NM_006078, intron 1 of 3) 45341 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 220-264 chr4 105738982 105739119 + 2 NA intron (NM_001370181, intron 5 of 11) L1MA5|LINE|L1 28237 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 151-84 chr8 63426981 63427069 + 2 NA Intergenic MIR|SINE|MIR -38824 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 542-7 chr1 80627289 80627824 + 2 NA intron (NR_125940, intron 2 of 3) L1PA16|LINE|L1 -13731 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 480-229 chr5 27972332 27972612 + 2 NA Intergenic Intergenic 315193 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 261-12 chr1 81521409 81521581 + 2 NA intron (NR_125943, intron 1 of 3) intron (NR_125943, intron 1 of 3) 36207 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 305-250 chr2 49145807 49145978 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 8623 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 231-85 chr13 73530523 73530661 + 2 NA Intergenic Intergenic -33652 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 631-114 chr7 42817018 42817381 + 2 NA Intergenic L1MA7|LINE|L1 94644 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 283-212 chr19 46885167 46885396 + 2 NA intron (NM_004491, intron 1 of 6) MIR|SINE|MIR 24284 NM_004491 2909 Hs.509447 NM_004491 ENSG00000160007 ARHGAP35 GRF-1|GRLF1|P190-A|P190A|p190ARhoGAP|p190RhoGAP Rho GTPase activating protein 35 protein-coding 397-320 chr7 141396033 141396296 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -155246 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 257-72 chr11 105725150 105725326 + 2 NA intron (NR_046356, intron 2 of 16) MLT1N2|LTR|ERVL-MaLR 114532 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 602-50 chr19 37084287 37084711 + 2 NA intron (NR_138039, intron 2 of 5) L1MCc|LINE|L1 6066 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 923-17 chr3 26337438 26338082 + 2 NA Intergenic L1MA5|LINE|L1 -285046 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 437-195 chr4 97432015 97432288 + 2 NA intron (NR_102713, intron 1 of 5) L1MB3|LINE|L1 65225 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 329-231 chr18 6087581 6087815 + 2 NA intron (NM_001365766, intron 15 of 16) intron (NM_001365766, intron 15 of 16) -169046 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 261-344 chr7 13474443 13474659 + 2 NA Intergenic L1M3|LINE|L1 511963 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 308-436 chr6 142865395 142865617 + 2 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 79670 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 276-237 chr2 114560694 114560870 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 99205 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 412-110 chr16 62534824 62535220 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -498584 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 478-249 chr6 50509748 50510112 + 2 NA Intergenic Intergenic -203614 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 268-310 chr5 60939799 60940021 + 2 NA intron (NM_001007234, intron 1 of 5) L1MEj|LINE|L1 5160 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 260-177 chr18 3952574 3952727 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -9703 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 518-273 chr7 36706123 36706488 + 2 NA intron (NM_001637, intron 1 of 20) Tigger1|DNA|TcMar-Tigger 18189 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 393-303 chr6 44518155 44518441 + 2 NA Intergenic L1MA4A|LINE|L1 33583 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 337-400 chr4 69744646 69744853 + 2 NA intron (NM_014465, intron 4 of 7) L1PA15|LINE|L1 15871 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 275-204 chr2 136455761 136455963 + 2 NA Intergenic L1MC4|LINE|L1 -309683 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 621-18 chr10 106790567 106791018 + 2 NA intron (NM_001206569, intron 3 of 25) intron (NM_001206569, intron 3 of 25) 373914 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 302-483 chr9 28318976 28319177 + 2 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 400229 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 258-94 chr12 67813343 67813528 + 2 NA Intergenic L1MB2|LINE|L1 -83960 NR_110063 101927901 Hs.369609 NR_110063 ENSG00000255970 LINC02421 - long intergenic non-protein coding RNA 2421 ncRNA 382-41 chr10 76295891 76296247 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 513308 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 186-110 chr3 96303693 96303838 + 2 NA Intergenic Intergenic -56199 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 170-146 chr9 80036746 80036911 + 2 NA Intergenic Intergenic 61805 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 221-112 chr17 62101230 62101424 + 2 NA Intergenic Intergenic -36049 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 163-105 chr5 145780348 145780492 + 2 NA intron (NM_205846, intron 5 of 6) MIR|SINE|MIR 54922 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 249-129 chr15 65462449 65462643 + 2 NA intron (NR_135485, intron 15 of 20) intron (NR_135485, intron 15 of 20) -39599 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 142-66 chr6 105190341 105190442 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger -10377 NM_022361 64208 Hs.458336 NM_022361 ENSG00000132429 POPDC3 POP3|bA355M14.1 popeye domain containing 3 protein-coding 458-122 chr2 28123962 28124289 + 2 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 82836 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 195-161 chr4 35641628 35641817 + 2 NA Intergenic L1MEc|LINE|L1 602217 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 373-120 chr14 78709016 78709208 + 2 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 305393 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 263-400 chr7 77897390 77897572 + 2 NA intron (NM_001127357, intron 3 of 17) intron (NM_001127357, intron 3 of 17) 57351 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 322-220 chr18 61041515 61041753 + 2 NA Intergenic L1MB8|LINE|L1 -291796 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 308-204 chr19 17630438 17630727 + 2 NA intron (NM_001080421, intron 28 of 41) intron (NM_001080421, intron 28 of 41) 57617 NM_001080421 23025 Hs.164502 NM_001080421 ENSG00000130477 UNC13A Munc13-1 unc-13 homolog A protein-coding 190-138 chr4 134608840 134608989 + 2 NA Intergenic L2a|LINE|L2 185046 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 285-263 chr3 36144926 36145208 + 2 NA Intergenic L1ME3G|LINE|L1 -235420 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 524-9 chr1 101534197 101534618 + 2 NA Intergenic Intergenic 210570 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 435-38 chr10 81856030 81856279 + 2 NA Intergenic L1MB7|LINE|L1 -19040 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 339-207 chr17 11161349 11161674 + 2 NA Intergenic LTR9B|LTR|ERV1 -79702 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 328-557 chr8 46492727 46493021 + 2 NA Intergenic ALR/Alpha|Satellite|centr 124769 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 636-63 chr18 69449191 69449712 + 2 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) -20480 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 218-2 chr1 33063348 33063505 + 2 NA Intergenic L2a|LINE|L2 -17727 NM_001350401 113451 Hs.101807 NM_052998 ENSG00000142920 AZIN2 ADC|AZI2|AZIB1|ODC-p|ODC1L|ODCp antizyme inhibitor 2 protein-coding 327-325 chr3 42343800 42344037 + 2 NA Intergenic AluSz|SINE|Alu 66692 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 336-466 chr5 117782256 117782485 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 52009 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 549-135 chr3 35268046 35268467 + 2 NA intron (NR_110817, intron 2 of 3) L1M5|LINE|L1 125767 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 536-209 chr7 32030772 32031137 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 39453 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 315-365 chr5 18201615 18201880 + 2 NA Intergenic PABL_A-int|LTR|ERV1 394473 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 378-397 chr7 35752089 35752415 + 2 NA Intergenic Intergenic 35815 NR_108083 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 894-51 chr8 137552251 137552881 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -138978 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 345-18 chr1 112270771 112271027 + 2 NA Intergenic Intergenic -125315 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 333-555 chr8 27159166 27159401 + 2 NA Intergenic MER54A|LTR|ERVL 99121 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 392-350 chr9 108683801 108684000 + 2 NA Intergenic Intergenic 172086 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 229-156 chr18 11297029 11297224 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -148364 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 248-149 chr17 12368727 12368929 + 2 NA Intergenic Intergenic -181140 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 264-36 chr10 28036107 28036276 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -37112 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 293-129 chr15 49226707 49226872 + 2 NA intron (NM_001352047, intron 4 of 11) L1MA4A|LINE|L1 56542 NM_001289030 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 286-54 chr10 114093596 114093850 + 2 NA Intergenic Intergenic 49857 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 302-492 chrX 44938940 44939123 + 2 NA intron (NR_111960, intron 2 of 27) Tigger1|DNA|TcMar-Tigger 65856 NM_001291417 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 497-179 chr3 88464375 88464788 + 2 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 126125 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 307-412 chr6 11722829 11723083 + 2 NA intron (NM_032744, intron 5 of 5) intron (NM_032744, intron 5 of 5) 56091 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 241-206 chr2 172365133 172365294 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -62123 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 235-7 chr1 66702560 66702710 + 2 NA intron (NM_001350218, intron 16 of 22) intron (NM_001350218, intron 16 of 22) -49824 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 226-384 chr9 94466089 94466309 + 2 NA Intergenic L1MDa|LINE|L1 -88846 NR_121568 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 ncRNA 435-218 chr6 69856730 69857095 + 2 NA Intergenic Intergenic -9644 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 233-404 chrX 71248456 71248619 + 2 NA TTS (NM_001171163) TTS (NM_001171163) 5603 NM_201599 9203 Hs.522684 NM_005096 ENSG00000147130 ZMYM3 DXS6673E|MYM|XFIM|ZNF198L2|ZNF261 zinc finger MYM-type containing 3 protein-coding 284-371 chr7 15253285 15253431 + 2 NA intron (NM_001004320, intron 12 of 12) L2a|LINE|L2 -278500 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 309-252 chr2 77460393 77460566 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 61897 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 313-98 chr11 121215103 121215351 + 2 NA Intergenic L1PB1|LINE|L1 -77544 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 232-328 chr6 109022097 109022304 + 2 NA intron (NM_014454, intron 1 of 9) intron (NM_014454, intron 1 of 9) -12645 NM_001199933 27244 Hs.591336 NM_014454 ENSG00000080546 SESN1 PA26|SEST1 sestrin 1 protein-coding 316-478 chr6 39765401 39765615 + 2 NA Intergenic Intergenic -26868 NM_001201427 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 537-189 chr5 21017227 21017676 + 2 NA Intergenic L2|LINE|L2 -401916 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 502-104 chr16 63192469 63192889 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -1156241 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 332-536 chr8 105304735 105305049 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -13546 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 249-343 chr5 121738743 121738947 + 2 NA Intergenic Intergenic -113037 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 247-69 chr11 116120947 116121186 + 2 NA Intergenic L1MC5|LINE|L1 -360866 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 665-75 chr5 39488270 39488767 + 2 NA Intergenic (ATTATAT)n|Simple_repeat|Simple_repeat -31913 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 272-370 chr5 167238092 167238294 + 2 NA intron (NM_001122679, intron 1 of 29) Kanga1|DNA|TcMar-Tc2 -69792 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 373-67 chr10 111892909 111893216 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 290703 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 344-242 chr2 84823457 84823725 + 2 NA intron (NM_001080824, intron 5 of 5) intron (NM_001080824, intron 5 of 5) 57493 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 203-65 chr14 73837421 73837608 + 2 NA Intergenic AluSz|SINE|Alu -7379 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 442-179 chr3 2072998 2073243 + 2 NA Intergenic Intergenic -25683 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 173-34 chr14 51513499 51513657 + 2 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 24450 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 207-187 chr3 55236454 55236620 + 2 NA Intergenic L1PB3|LINE|L1 58365 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 377-70 chr11 70052963 70053151 + 2 NA Intergenic L1ME3A|LINE|L1 10867 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 320-14 chr1 73669027 73669228 + 2 NA Intergenic Intergenic -5552 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 217-108 chr14 22134832 22135044 + 2 NA Intergenic L1MA10|LINE|L1 297815 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 276-276 chr3 1711966 1712186 + 2 NA Intergenic Intergenic -386727 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 320-13 chr1 73236438 73236654 + 2 NA Intergenic Intergenic -69624 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 464-223 chr6 145621566 145621895 + 2 NA Intergenic L1MA9|LINE|L1 65147 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 285-341 chr5 79901258 79901454 + 2 NA Intergenic AluSz6|SINE|Alu -35223 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 242-388 chr8 33960516 33960718 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -360511 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 319-279 chr2 199417776 199418025 + 2 NA intron (NR_134967, intron 3 of 4) intron (NR_134967, intron 3 of 4) 40039 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 198-232 chr7 54077558 54077741 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -253048 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 331-275 chr2 104970475 104970715 + 2 NA intron (NR_110603, intron 1 of 2) AluSx1|SINE|Alu -67474 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 375-32 chr10 7152608 7152921 + 2 NA Intergenic Intergenic 34020 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 121-36 chr22 34706845 34706930 + 2 NA Intergenic Intergenic 291029 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 376-132 chr16 58651324 58651668 + 2 NA Intergenic MIRb|SINE|MIR -21670 NM_016284 23019 Hs.460923 NM_016284 ENSG00000125107 CNOT1 AD-005|CDC39|NOT1|NOT1H CCR4-NOT transcription complex subunit 1 protein-coding 507-181 chr4 32859894 32860330 + 2 NA Intergenic Intergenic 509074 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 256-242 chr22 22866738 22866937 + 2 NA Intergenic Intergenic -19430 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 467-4 chr1 48475498 48475774 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -3428 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 205-7 chr1 34292830 34292999 + 2 NA Intergenic Intergenic 116007 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 313-2 chr1 34505108 34505300 + 2 NA Intergenic L1PB4|LINE|L1 164490 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 287-418 chr8 121366345 121366533 + 2 NA Intergenic L1MA5|LINE|L1 -272907 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 344-438 chr6 146022406 146022606 + 2 NA Intergenic Intergenic -5201 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 354-238 chr2 169664365 169664654 + 2 NA intron (NM_001085447, intron 4 of 8) intron (NM_001085447, intron 4 of 8) 29896 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 382-208 chr2 115089698 115089956 + 2 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 25254 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 365-377 chr7 64734019 64734230 + 2 NA Intergenic Intergenic 55060 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 229-401 chr8 131289208 131289431 + 2 NA Intergenic Intergenic -248410 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 412-168 chr2 143417189 143417498 + 2 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 287924 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 283-382 chr5 150956198 150956453 + 2 NA Intergenic L1MDa|LINE|L1 -9741 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 355-428 chr6 35300061 35300330 + 2 NA intron (NM_022047, intron 1 of 10) AluJr|SINE|Alu 2377 NM_022047 50619 Hs.15476 NM_022047 ENSG00000023892 DEF6 IBP|SLAT|SWAP70L DEF6 guanine nucleotide exchange factor protein-coding 429-141 chr2 22891694 22891975 + 2 NA Intergenic L2c|LINE|L2 355355 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 575 chr1 35332108 35332483 + 2 NA intron (NM_001350140, intron 3 of 27) intron (NM_001350140, intron 3 of 27) 33782 NR_046659 100861513 Hs.585397 NR_046659 ENSG00000227409 ZMYM4-AS1 - ZMYM4 antisense RNA 1 ncRNA 252-61 chr11 24423097 24423302 + 2 NA Intergenic L1M1|LINE|L1 -73854 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 583-117 chr3 190260655 190261163 + 2 NA Intergenic Intergenic 61537 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 483-277 chr8 139779500 139779909 + 2 NA intron (NM_001160372, intron 21 of 22) L1MC1|LINE|L1 -76581 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 413-124 chr18 56359478 56359857 + 2 NA Intergenic Intergenic -168405 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 226-238 chr3 151543828 151544021 + 2 NA Intergenic AluSz|SINE|Alu 22071 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 380-342 chr6 68564760 68565081 + 2 NA Intergenic Intergenic 69404 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 432-196 chr4 40739098 40739403 + 2 NA Intergenic Intergenic -10705 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 387-161 chr2 20642734 20643013 + 2 NA intron (NM_022460, intron 2 of 6) L2a|LINE|L2 8225 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 259-332 chr5 164952021 164952225 + 2 NA Intergenic Intergenic 481844 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 643-35 chr14 75772541 75772937 + 2 NA intron (NM_015072, intron 21 of 31) AluSx1|SINE|Alu 111493 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 550-66 chr13 105823709 105824195 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 117122 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 182-168 chr8 81048061 81048215 + 2 NA intron (NM_018440, intron 2 of 8) L2c|LINE|L2 63930 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 674-101 chr8 52537107 52537614 + 2 NA intron (NM_207413, intron 4 of 4) L1MA5|LINE|L1 28070 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 491-106 chr19 51276958 51277414 + 2 NA intron (NR_136526, intron 1 of 2) intron (NR_136526, intron 1 of 2) 5920 NR_136526 105372444 Hs.740053 NR_136526 ENSG00000268318 LINC01872 - long intergenic non-protein coding RNA 1872 ncRNA 354-476 chr8 126153980 126154244 + 2 NA Intergenic L1PA16|LINE|L1 -171383 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 298-342 chr4 136905952 136906168 + 2 NA intron (NR_149105, intron 3 of 3) L1MA5|LINE|L1 -287696 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 359-224 chr2 33130191 33130453 + 2 NA intron (NM_206943, intron 4 of 33) intron (NM_206943, intron 4 of 33) -4275 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 378-265 chr21 17025783 17026104 + 2 NA Intergenic Intergenic -412947 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 256-321 chr5 65128675 65128863 + 2 NA Intergenic Intergenic 353151 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 431-169 chr22 32396867 32397186 + 2 NA intron (NM_014306, intron 7 of 11) LTR3B|LTR|ERVK 15221 NM_014306 51493 Hs.474643 NM_014306 ENSG00000100220 RTCB C22orf28|DJ149A16.6|FAAP|HSPC117 RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding 436-5 chr1 49435384 49435730 + 2 NA intron (NR_046839, intron 2 of 3) intron (NR_046839, intron 2 of 3) 36528 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 371-282 chr4 89773053 89773296 + 2 NA intron (NM_001146054, intron 4 of 5) intron (NM_001146054, intron 4 of 5) -63227 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 331-309 chr20 585222 585396 + 2 NA Intergenic Intergenic 24957 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 237-346 chr7 22245456 22245591 + 2 NA intron (NM_012294, intron 7 of 25) L1MA6|LINE|L1 -50713 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 215-14 chr1 185603666 185603862 + 2 NA intron (NR_110793, intron 2 of 3) MLT1J2|LTR|ERVL-MaLR 24724 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 299-387 chr5 171569254 171569404 + 2 NA Intergenic L1M4c|LINE|L1 149682 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 291-300 chr3 157742866 157743059 + 2 NA Intergenic L1PB1|LINE|L1 199618 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 382-344 chr5 145543142 145543494 + 2 NA Intergenic Intergenic 292024 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 367-343 chr5 8614707 8614963 + 2 NA Intergenic MLT2B3|LTR|ERVL 153910 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 124-46 chr22 28760131 28760211 + 2 NA Intergenic Intergenic -12503 NM_001284264 150275 Hs.406460 NM_173510 ENSG00000159873 CCDC117 dJ366L4.1 coiled-coil domain containing 117 protein-coding 466-150 chr2 193386486 193386943 + 2 NA Intergenic Intergenic 636869 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 323-577 chr9 32803964 32804199 + 2 NA Intergenic L1MC1|LINE|L1 20541 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 200-235 chr6 56440881 56441041 + 2 NA Intergenic Intergenic -46833 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 271-130 chr14 51111168 51111335 + 2 NA Intergenic Intergenic -15547 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 239-314 chr5 71981503 71981733 + 2 NA Intergenic L1ME3D|LINE|L1 -125857 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 357-5 chr1 48861751 48861942 + 2 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -84877 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 255-120 chr15 26056158 26056325 + 2 NA Intergenic Intergenic -59572 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 243-327 chr4 74288298 74288484 + 2 NA intron (NM_001144978, intron 7 of 7) MLT1J|LTR|ERVL-MaLR -20079 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 211-183 chr3 45862077 45862234 + 2 NA intron (NM_001276379, intron 2 of 9) L2a|LINE|L2 -20036 NR_075080 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 481-122 chr18 3472370 3472734 + 2 NA intron (NR_110429, intron 2 of 2) MER45B|DNA|hAT-Tip100 6302 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 265-98 chr13 104423072 104423217 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 997944 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 363-29 chr1 232087307 232087504 + 2 NA Intergenic LTR48B|LTR|ERV1 161571 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 279-431 chr8 138349654 138349860 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 147504 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 161-61 chr2 188084791 188084935 + 2 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 202828 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 511-208 chr5 101062934 101063382 + 2 NA Intergenic L1M1|LINE|L1 -159876 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 346-241 chr2 65805979 65806210 + 2 NA Intergenic L1MEi|LINE|L1 -373495 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 272-45 chr10 43745957 43746157 + 2 NA Intergenic Intergenic 32768 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 416-328 chr8 46298681 46298930 + 2 NA Intergenic ALR/Alpha|Satellite|centr 318838 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 421-171 chr21 21822001 21822278 + 2 NA Intergenic Intergenic 75154 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 220-379 chr8 129522318 129522487 + 2 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -38260 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 393-261 chr5 6829640 6829983 + 2 NA Intergenic Intergenic -1890 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 270-434 chr9 137639658 137639879 + 2 NA intron (NM_001354612, intron 1 of 8) intron (NM_001354612, intron 1 of 8) 20763 NM_001354259 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 342-312 chr3 55553825 55554012 + 2 NA intron (NM_015576, intron 16 of 16) L1ME4a|LINE|L1 -66276 NM_003392 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 311-172 chr16 10276985 10277249 + 2 NA Intergenic MER113|DNA|hAT-Charlie -94209 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 386-235 chr3 44565995 44566305 + 2 NA intron (NM_001288590, intron 3 of 5).2 intron (NM_001288590, intron 3 of 5).2 10957 NM_025169 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 250-237 chr20 20777768 20777930 + 2 NA Intergenic Intergenic -65205 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 407-184 chr3 4597971 4598203 + 2 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 104739 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 409-231 chr4 148639766 148640107 + 2 NA Intergenic Intergenic -195238 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 192-39 chr11 59125774 59125937 + 2 NA exon (NM_198947, exon 4 of 4) exon (NM_198947, exon 4 of 4) -16891 NM_001142520 63901 Hs.150651 NM_022074 ENSG00000166801 FAM111A GCLEB|KCS2 family with sequence similarity 111 member A protein-coding 290-487 chr9 102541832 102542103 + 2 NA intron (NR_103830, intron 1 of 4) ERVL-int|LTR|ERVL 22330 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 368-65 chr10 106081871 106082110 + 2 NA Intergenic Intergenic -58175 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 545-234 chr8 67466119 67466614 + 2 NA intron (NR_136224, intron 2 of 4) L1PA16|LINE|L1 122532 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 324-118 chr12 42660480 42660694 + 2 NA intron (NR_135027, intron 3 of 4) intron (NR_135027, intron 3 of 4) 14004 NR_135027 105369738 Hs.569161 NR_135026 ENSG00000257164 LINC02451 - long intergenic non-protein coding RNA 2451 ncRNA 325-205 chr16 78214207 78214384 + 2 NA intron (NM_001291997, intron 4 of 7) MIR|SINE|MIR 114641 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 196-246 chr8 42570142 42570265 + 2 NA Intergenic Intergenic -28249 NM_006749 6575 Hs.653173 NM_006749 ENSG00000168575 SLC20A2 GLVR-2|GLVR2|IBGC1|IBGC3|MLVAR|PIT-2|PIT2|RAM1|Ram-1 solute carrier family 20 member 2 protein-coding 202-175 chr3 150196946 150197085 + 2 NA Intergenic LTR34|LTR|ERV1 -41504 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 219-271 chr5 3255228 3255413 + 2 NA Intergenic Intergenic 77485 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 334-352 chr3 89865048 89865309 + 2 NA Intergenic L1MEj|LINE|L1 757557 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 292-289 chr3 91530842 91531083 + 2 NA Intergenic ALR/Alpha|Satellite|centr 2423341 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 436-216 chr4 97266537 97266913 + 2 NA Intergenic Intergenic -100201 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 586-139 chr7 41269382 41269703 + 2 NA Intergenic Intergenic 167938 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 194-168 chr5 105826022 105826199 + 2 NA Intergenic Intergenic 726636 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 224-301 chr7 79084337 79084503 + 2 NA intron (NM_001301128, intron 1 of 20) L1M4|LINE|L1 75432 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 616-155 chr7 8269362 8269821 + 2 NA intron (NR_125740, intron 3 of 5) L1MEc|LINE|L1 -6979 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 295-373 chr5 23282157 23282375 + 2 NA Intergenic L1ME4a|LINE|L1 -225343 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 623-41 chr16 60562049 60562586 + 2 NA Intergenic Intergenic -202524 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 220-189 chr2 189282206 189282322 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -102503 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 395-35 chr10 33897608 33897849 + 2 NA Intergenic Intergenic -125048 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 590-102 chr3 31490930 31491379 + 2 NA Intergenic MIRc|SINE|MIR -41771 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 287-312 chr5 45191639 45191825 + 2 NA Intergenic Intergenic 382785 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 287-452 chrX 84104390 84104607 + 2 NA intron (NM_014496, intron 17 of 21) intron (NM_014496, intron 17 of 21) 83437 NM_001330512 27330 Hs.234478 NM_014496 ENSG00000072133 RPS6KA6 PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6 ribosomal protein S6 kinase A6 protein-coding 443-45 chr10 129916142 129916381 + 2 NA intron (NM_001005463, intron 6 of 15) intron (NM_001005463, intron 6 of 15) 48013 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 257-267 chr3 58715328 58715523 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -48651 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 816-6 chr13 71441291 71441930 + 2 NA intron (NM_080759, intron 10 of 10) intron (NM_080759, intron 10 of 10) 425582 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 379-124 chr18 576739 576988 + 2 NA Intergenic MER50|LTR|ERV1 -3517 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 289-475 chr8 130495155 130495424 + 2 NA Intergenic L1ME4b|LINE|L1 -51615 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 218-300 chr7 28658901 28659049 + 2 NA intron (NM_182899, intron 4 of 9) (TA)n|Simple_repeat|Simple_repeat -27158 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 502-119 chr18 22862256 22862617 + 2 NA Intergenic Intergenic -70892 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 244-204 chr20 59698498 59698668 + 2 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) 21922 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 266-377 chr6 137002908 137003091 + 2 NA intron (NM_001278724, intron 5 of 5) intron (NM_001278724, intron 5 of 5) -9768 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 302-465 chr8 126395701 126395968 + 2 NA Intergenic Intergenic 70339 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 181-99 chr3 194443169 194443279 + 2 NA intron (NM_001367549, intron 15 of 33) intron (NM_001367549, intron 15 of 33) 25015 NM_024524 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 293-295 chr4 35523971 35524204 + 2 NA Intergenic Intergenic 719852 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 828-25 chr2 72666004 72666661 + 2 NA intron (NR_135774, intron 6 of 19) L1PA16|LINE|L1 159701 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 298-346 chr4 171116183 171116374 + 2 NA Intergenic Intergenic -69906 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 363-24 chr1 187270850 187271193 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -172607 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 324-334 chr22 39792221 39792459 + 2 NA intron (NM_152512, intron 5 of 6) L1PREC2|LINE|L1 101420 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 268-323 chr5 117895484 117895655 + 2 NA intron (NR_104997, intron 1 of 2) L1ME3Cz|LINE|L1 165208 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 249-388 chr7 71353251 71353433 + 2 NA intron (NM_022479, intron 2 of 10) L1MC4|LINE|L1 -45572 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 167-36 chr14 86712164 86712301 + 2 NA Intergenic Intergenic -193546 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 118-28 chr2 168580682 168580755 + 2 NA intron (NM_001256126, intron 3 of 10) L1ME3B|LINE|L1 -2225 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 287-401 chr8 79577366 79577604 + 2 NA Intergenic Intergenic -33632 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 239-264 chr3 176570597 176570735 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie 55563 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 232-96 chr14 49336482 49336674 + 2 NA Intergenic Intergenic 249802 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 281-201 chr2 40338610 40338799 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 91600 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 386-125 chr16 73398107 73398343 + 2 NA intron (NR_038234, intron 1 of 2) L2a|LINE|L2 11420 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 365-343 chr6 40137554 40137814 + 2 NA Intergenic Intergenic -203222 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 210-307 chr9 26537546 26537741 + 2 NA Intergenic Intergenic 355159 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 238-137 chr17 47390845 47391003 + 2 NA intron (NM_001195192, intron 12 of 21) (TCTA)n|Simple_repeat|Simple_repeat 66969 NM_152347 124989 Hs.463303 NM_152347 ENSG00000178852 EFCAB13 C17orf57 EF-hand calcium binding domain 13 protein-coding 299-51 chr10 42316923 42317113 + 2 NA Intergenic Intergenic 51027 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 583-58 chr14 71270633 71271064 + 2 NA Intergenic MIR3|SINE|MIR -49628 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 332-98 chr11 82968438 82968662 + 2 NA Intergenic L2a|LINE|L2 65724 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 300-82 chr12 7345363 7345597 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 41148 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 179-112 chr7 105953668 105953796 + 2 NA Intergenic L1MEd|LINE|L1 -9532 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 580-189 chr7 97265893 97266379 + 2 NA Intergenic Intergenic 149543 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 482-160 chr3 18626916 18627324 + 2 NA Intergenic L1MB3|LINE|L1 -181528 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 271-107 chr12 99138478 99138674 + 2 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) 16190 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 397-196 chr22 38544140 38544489 + 2 NA intron (NM_007068, intron 8 of 13) MER4A1|LTR|ERV1 24095 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 752-60 chr5 25729172 25729747 + 2 NA Intergenic Intergenic 538506 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 307-267 chr2 230134340 230134493 + 2 NA Intergenic MER89|LTR|ERV1 -65492 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 333-164 chr15 56272358 56272621 + 2 NA Intergenic L1MB7|LINE|L1 -27407 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 303-438 chr7 145856746 145856973 + 2 NA Intergenic Intergenic -917412 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 308-342 chr4 74528155 74528337 + 2 NA Intergenic Intergenic 83110 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 329-580 chr8 103176503 103176732 + 2 NA intron (NM_001024372, intron 1 of 1) intron (NM_001024372, intron 1 of 1) -4477 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 436-320 chr8 137480261 137480570 + 2 NA Intergenic L3|LINE|CR1 -66827 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 217-78 chr11 95634381 95634532 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 155326 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 358-250 chr20 10704884 10705172 + 2 NA Intergenic L1MB3|LINE|L1 -31029 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 461-26 chr10 21827401 21827727 + 2 NA intron (NM_022365, intron 8 of 11) MLT1C|LTR|ERVL-MaLR 176166 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 337-340 chr3 25395497 25395759 + 2 NA intron (NM_001290300, intron 1 of 7) L1PB1|LINE|L1 -10701 NR_134933 105376997 Hs.536687 NR_134933 RARB-AS1 - RARB antisense RNA 1 ncRNA 310-176 chr16 68567125 68567371 + 2 NA TTS (NR_130978) TTS (NR_130978) 27957 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 294-176 chr18 46361442 46361605 + 2 NA intron (NM_001256758, intron 1 of 5) L1ME4b|LINE|L1 27299 NR_046357 494470 Hs.501114 NM_152470 ENSG00000141622 RNF165 ARKL2|Ark2C|RNF111L2 ring finger protein 165 protein-coding 325-58 chr10 41734408 41734672 + 2 NA Intergenic ALR/Alpha|Satellite|centr 633505 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 328-354 chr3 79865420 79865615 + 2 NA Intergenic Intergenic -97519 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 234-193 chr2 166979531 166979761 + 2 NA intron (NM_152381, intron 2 of 10) L1MEf|LINE|L1 91159 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 508-111 chr2 111663626 111663984 + 2 NA Intergenic Intergenic 107329 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 273-82 chr11 79405609 79405818 + 2 NA intron (NM_001098816, intron 1 of 33) L1ME4c|LINE|L1 -3604 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 326-220 chr19 33030692 33030889 + 2 NA intron (NM_033103, intron 2 of 14) MER21C|LTR|ERVL 34098 NM_033103 85415 Hs.466435 NM_033103 ENSG00000131941 RHPN2 P76RBE|RHOBP rhophilin Rho GTPase binding protein 2 protein-coding 227-71 chr11 102593416 102593558 + 2 NA exon (NM_004771, exon 8 of 10) exon (NM_004771, exon 8 of 10) 31845 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 615-13 chr10 116137016 116137577 + 2 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 57493 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 149-7 chr1 184407384 184407479 + 2 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 20402 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 146-84 chr7 12188548 12188669 + 2 NA Intergenic Intergenic -22686 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 349-504 chr8 88987719 88988005 + 2 NA Intergenic MIR3|SINE|MIR -660379 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 688 chr1 57496467 57497026 + 2 NA intron (NM_001353980, intron 4 of 5) MIR3|SINE|MIR -71825 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 281-247 chr2 224076890 224077084 + 2 NA Intergenic HERVL32-int|LTR|ERVL -37668 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 394-8 chr1 75290137 75290394 + 2 NA intron (NM_001320283, intron 3 of 21) intron (NM_001320283, intron 3 of 21) 155877 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 266-283 chr4 59146129 59146343 + 2 NA Intergenic L1PA11|LINE|L1 132663 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 343-272 chr2 133176284 133176506 + 2 NA intron (NM_207481, intron 5 of 17) intron (NM_207481, intron 5 of 17) -89800 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 367-425 chr7 91749207 91749390 + 2 NA Intergenic L1M2|LINE|L1 131404 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 999-12 chr7 53591603 53592154 + 2 NA Intergenic Intergenic 220053 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 364-236 chr2 198379938 198380255 + 2 NA Intergenic Intergenic -4999 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 342-279 chr20 12962153 12962422 + 2 NA Intergenic L1ME3Cz|LINE|L1 -9768 NR_109868 101929486 Hs.548761 NR_109868 ENSG00000233048 LINC01722 - long intergenic non-protein coding RNA 1722 ncRNA 311-288 chr2 238619952 238620247 + 2 NA Intergenic Intergenic -64600 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 437-160 chr20 52686061 52686330 + 2 NA Intergenic MIRb|SINE|MIR 65357 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 194-90 chr2 66148022 66148177 + 2 NA Intergenic Intergenic 210229 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 489-257 chr8 97082182 97082633 + 2 NA intron (NM_016134, intron 7 of 7) intron (NM_016134, intron 7 of 7) 195521 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 254-161 chr18 1017404 1017616 + 2 NA Intergenic Intergenic -89517 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 238-177 chr2 80881289 80881483 + 2 NA Intergenic Intergenic 568007 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 351-420 chr6 86436363 86436541 + 2 NA Intergenic L2|LINE|L2 -501076 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 496-196 chr4 71122887 71123321 + 2 NA Intergenic HAL1ME|LINE|L1 -64155 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 176-31 chr15 37495745 37495892 + 2 NA Intergenic L1MC1|LINE|L1 -394507 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 329-503 chr6 114533045 114533291 + 2 NA Intergenic L1MA4|LINE|L1 -470291 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 384-105 chr14 34429977 34430287 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 32108 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 440-218 chr6 68002389 68002787 + 2 NA Intergenic MLT2A1|LTR|ERVL -52763 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 198-223 chr6 159653556 159653744 + 2 NA Intergenic L1MC4|LINE|L1 39591 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 214-229 chr4 29468933 29469093 + 2 NA Intergenic L1MEd|LINE|L1 254721 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 342-148 chr14 76658563 76658786 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -102794 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 477-41 chr10 73319947 73320284 + 2 NA intron (NM_001367801, intron 10 of 27) intron (NM_001367801, intron 10 of 27) 38639 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 376-88 chr12 124069000 124069278 + 2 NA intron (NM_001347902, intron 2 of 4) MER58A|DNA|hAT-Charlie 95924 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 226-35 chr10 19980595 19980786 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 164258 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 444-70 chr14 101184152 101184529 + 2 NA Intergenic Intergenic 63484 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 398-390 chrX 34180257 34180632 + 2 NA Intergenic Intergenic -48114 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 341-441 chr5 107781064 107781235 + 2 NA Intergenic L1MB5|LINE|L1 -110212 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 371-309 chr5 46138170 46138402 + 2 NA Intergenic ALR/Alpha|Satellite|centr -441906 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 305-160 chr14 86242943 86243146 + 2 NA Intergenic L1MC2|LINE|L1 308366 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 282-360 chr5 2550168 2550431 + 2 NA Intergenic Intergenic -162292 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 525-253 chr8 32949812 32950191 + 2 NA Intergenic L1M4|LINE|L1 228166 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 305-404 chr4 124125390 124125568 + 2 NA Intergenic L2a|LINE|L2 351215 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 371-257 chr3 142235059 142235259 + 2 NA Intergenic AluJr|SINE|Alu -9574 NR_033289 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 246-100 chr12 88929688 88929818 + 2 NA Intergenic L1M5|LINE|L1 89939 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 461-189 chr4 46810049 46810361 + 2 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 99040 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 867-19 chr19 29396801 29397407 + 2 NA intron (NR_040029, intron 5 of 9) intron (NR_040029, intron 5 of 9) 128648 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 287-135 chr14 60601382 60601644 + 2 NA Intergenic Intergenic -37703 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 318-275 chr2 88545502 88545666 + 2 NA intron (NR_110236, intron 2 of 2) intron (NR_110236, intron 2 of 2) 6864 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 618-39 chr15 90130988 90131348 + 2 NA intron (NR_149130, intron 2 of 2) AluSx1|SINE|Alu -28614 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 384-45 chr10 95780386 95780730 + 2 NA intron (NR_038444, intron 5 of 5) Tigger15a|DNA|TcMar-Tigger 24395 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 421-202 chr4 269902 270180 + 2 NA TTS (NM_001137608) TTS (NM_001137608) 35433 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 282-13 chr1 115108283 115108449 + 2 NA Intergenic Intergenic -18863 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 202-21 chr1 239226759 239226920 + 2 NA Intergenic L1M2|LINE|L1 -159729 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 356-285 chr20 39951133 39951391 + 2 NA Intergenic Intergenic -53199 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 513-295 chr9 11900773 11901158 + 2 NA Intergenic Intergenic -792420 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 339-438 chr5 5086468 5086723 + 2 NA Intergenic LTR49-int|LTR|ERV1 -8284 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 172-57 chr2 34787183 34787353 + 2 NA Intergenic Intergenic 109711 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 226-157 chr2 40476883 40477061 + 2 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -24882 NM_001351493 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 332-172 chr15 99532487 99532765 + 2 NA Intergenic L1MA9|LINE|L1 -32791 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 397-311 chr7 96394131 96394392 + 2 NA Intergenic L1MA3|LINE|L1 -72114 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 372-359 chr4 60560839 60561087 + 2 NA Intergenic L1ME2|LINE|L1 -361656 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 410-164 chr20 24416433 24416772 + 2 NA Intergenic Intergenic -52597 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 334-419 chr5 41532351 41532562 + 2 NA Intergenic Intergenic -21855 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 256-91 chr12 88786485 88786688 + 2 NA Intergenic L1MCa|LINE|L1 -206113 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 226-65 chr12 9274732 9274905 + 2 NA Intergenic Intergenic -8839 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 346-123 chr13 96676876 96677166 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 249792 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 254-158 chr17 72808904 72809131 + 2 NA intron (NM_001352692, intron 6 of 9) LTR8B|LTR|ERV1 -168545 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 383-327 chr5 135640768 135641075 + 2 NA intron (NM_001349335, intron 3 of 10) L1MEf|LINE|L1 13014 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 330-472 chr6 153823343 153823571 + 2 NA Intergenic L1P3|LINE|L1 -187039 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 319-241 chr2 67959539 67959711 + 2 NA Intergenic HERV16-int|LTR|ERVL 103379 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 499-38 chr11 30027622 30028042 + 2 NA Intergenic Intergenic -10802 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 257-36 chr10 36819222 36819398 + 2 NA Intergenic MER6C|DNA|TcMar-Tigger -306547 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 256-432 chr8 122209504 122209689 + 2 NA Intergenic Intergenic 359048 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 192-129 chr22 28438772 28438956 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -21005 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 368-402 chr6 126611786 126611999 + 2 NA Intergenic L1PA7|LINE|L1 127261 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 351-308 chr3 99083363 99083663 + 2 NA Intergenic tRNA-Cys-TGY|tRNA|tRNA -181818 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 250-341 chr5 57434089 57434312 + 2 NA Intergenic MIRc|SINE|MIR 48611 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 373-70 chr10 121761650 121762001 + 2 NA intron (NM_001001976, intron 11 of 11) L2|LINE|L2 -163367 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 250-142 chr15 86021254 86021453 + 2 NA Intergenic Intergenic -58267 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 895-21 chr2 104730529 104731272 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 26819 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 379-289 chr6 50697829 50698097 + 2 NA Intergenic Intergenic -15581 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 131-51 chr3 154405754 154405868 + 2 NA intron (NM_001038705, intron 3 of 3) L1MC4a|LINE|L1 24379 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 271-108 chr12 99172621 99172836 + 2 NA intron (NM_152788, intron 14 of 25) intron (NM_152788, intron 14 of 25) -17638 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 391-349 chr8 77858429 77858680 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 407857 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 389-276 chr5 3422476 3422702 + 2 NA non-coding (NR_033898, exon 3 of 5) non-coding (NR_033898, exon 3 of 5) -30227 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 471-80 chr14 60410852 60411207 + 2 NA Intergenic L1PB1|LINE|L1 75034 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 264-38 chr10 32659180 32659401 + 2 NA intron (NM_001321115, intron 21 of 43) L1MA6|LINE|L1 213150 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 246-118 chr14 62224858 62225038 + 2 NA Intergenic Intergenic -84975 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 289-395 chr5 148256027 148256300 + 2 NA Intergenic L1PREC2|LINE|L1 -12631 NR_138538 153218 Hs.483771 NM_001040129 ENSG00000214510 SPINK13 HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding 242-30 chr10 4539614 4539783 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -116458 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 412-240 chr4 104587617 104587877 + 2 NA intron (NR_125926, intron 1 of 9) HAL1|LINE|L1 -92853 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 599-109 chr5 94781360 94781775 + 2 NA intron (NM_001297777, intron 15 of 19) intron (NM_001297777, intron 15 of 19) 162898 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 248-10 chr1 85811389 85811557 + 2 NA intron (NM_152890, intron 47 of 59) L1M3|LINE|L1 -103040 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 232-324 chr6 48698021 48698195 + 2 NA Intergenic L1P4a|LINE|L1 -629419 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 679-74 chr3 106097327 106097831 + 2 NA Intergenic HAL1|LINE|L1 -228178 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 219-258 chr4 59219497 59219710 + 2 NA Intergenic Intergenic 206030 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 236-356 chr8 89142402 89142536 + 2 NA Intergenic L1MA2|LINE|L1 615242 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 343-184 chr16 57855359 57855535 + 2 NA Intergenic L1MC|LINE|L1 44810 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 546-37 chr11 39495453 39495872 + 2 NA Intergenic Intergenic 797468 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 496-139 chr2 133464691 133465072 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 103582 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 189-79 chr18 73367846 73367983 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 42973 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 208-115 chr2 50800953 50801135 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -104782 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 296-193 chr18 14100846 14101040 + 2 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 31492 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 166-33 chr15 57329615 57329737 + 2 NA Intergenic Intergenic 10538 NR_120337 101928611 Hs.569495 NR_120337 LINC01413 - long intergenic non-protein coding RNA 1413 ncRNA 370-436 chr8 72745551 72745860 + 2 NA intron (NR_110656, intron 1 of 2) MER77B|LTR|ERVL 13660 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 604-125 chr4 166130302 166130857 + 2 NA Intergenic L1PA10|LINE|L1 257342 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 214-202 chr3 31508811 31509002 + 2 NA Intergenic Intergenic -24019 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 264-412 chr8 77334370 77334614 + 2 NA Intergenic Intergenic -116205 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 294-216 chr2 70642961 70643197 + 2 NA Intergenic Intergenic -89253 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 397-102 chr15 45258355 45258604 + 2 NA intron (NR_120335, intron 1 of 4) L1ME3A|LINE|L1 6245 NM_004212 9153 Hs.367833 NM_004212 ENSG00000137860 SLC28A2 CNT2|HCNT2|HsT17153|SPNT1 solute carrier family 28 member 2 protein-coding 346-295 chr22 48227495 48227691 + 2 NA Intergenic Intergenic -46771 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 361-157 chr15 70520288 70520508 + 2 NA Intergenic L1MB5|LINE|L1 -14470 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 125 chr1 33495195 33495303 + 2 NA exon (NM_145238, exon 8 of 8) exon (NM_145238, exon 8 of 8) 22604 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 252-292 chr4 41283120 41283366 + 2 NA Intergenic AluJo|SINE|Alu 26315 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 360-5 chr1 43237460 43237660 + 2 NA intron (NM_001195831, intron 22 of 23) L2c|LINE|L2 -32423 NM_144626 128218 Hs.104476 NM_144626 ENSG00000179178 TMEM125 - transmembrane protein 125 protein-coding 255-312 chr5 5769771 5769981 + 2 NA Intergenic Intergenic 347199 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 309-465 chr5 166658268 166658482 + 2 NA Intergenic Intergenic 267995 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 320-423 chr5 20191040 20191353 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -114355 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 146-32 chr16 6475927 6476034 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -297829 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 268-157 chr17 78009012 78009218 + 2 NA intron (NM_018996, intron 2 of 20) intron (NM_018996, intron 2 of 20) 4878 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 453-240 chr7 8519323 8519618 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 85861 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 317-483 chr8 88311595 88311884 + 2 NA intron (NM_005941, intron 1 of 9) Charlie1b|DNA|hAT-Charlie 15744 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 359-485 chr8 122737161 122737390 + 2 NA Intergenic Intergenic -43169 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 283-42 chr1 238859274 238859450 + 2 NA Intergenic AluSx|SINE|Alu -373345 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 211-298 chr8 75816342 75816503 + 2 NA Intergenic Intergenic 276454 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 212-209 chr3 61185894 61186041 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 65485 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 372-491 chr8 119298069 119298337 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -26968 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 418-44 chr11 78773259 78773472 + 2 NA intron (NM_001098816, intron 17 of 33) MIRb|SINE|MIR -198501 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 580-132 chr4 32307462 32307854 + 2 NA Intergenic AluSc|SINE|Alu -43380 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 367-457 chr8 93880291 93880590 + 2 NA Intergenic Intergenic 35679 NR_039602 100616169 NR_039602 ENSG00000284288 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 321-539 chr8 10891337 10891533 + 2 NA Intergenic Intergenic 51409 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 292-478 chrX 82763072 82763310 + 2 NA Intergenic Intergenic -745099 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 335-142 chr13 65802637 65802957 + 2 NA Intergenic Intergenic -63250 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 247-10 chr1 81444113 81444312 + 2 NA intron (NM_001366004, intron 2 of 27) intron (NM_001366004, intron 2 of 27) 113490 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 565-186 chr9 18813846 18814320 + 2 NA intron (NM_001040272, intron 20 of 28) L1M2|LINE|L1 219126 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 559-102 chr2 153999355 153999891 + 2 NA intron (NM_052917, intron 3 of 12) L1MA6|LINE|L1 55229 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 261-130 chr16 62861234 62861405 + 2 NA Intergenic Intergenic -824881 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 208-7 chr1 96811934 96812127 + 2 NA intron (NM_001300985, intron 11 of 13) Tigger4a|DNA|TcMar-Tigger 89392 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 161-2 chr1 72160547 72160672 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 121930 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 412-9 chr1 95628283 95628647 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 118349 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 618-24 chr12 13305627 13306154 + 2 NA Intergenic Intergenic 70855 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 511-8 chr1 119459323 119459681 + 2 NA Intergenic AluSx|SINE|Alu 44352 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 526-229 chr7 51499789 51500165 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -106721 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 329-534 chr7 34300048 34300261 + 2 NA Intergenic LTR7Y|LTR|ERV1 -358064 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 375-64 chr10 121640050 121640241 + 2 NA Intergenic Intergenic -41687 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 234-44 chr10 90432632 90432822 + 2 NA intron (NR_110657, intron 3 of 6) intron (NR_110657, intron 3 of 6) 108078 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 415-171 chr3 24265132 24265437 + 2 NA intron (NM_001354708, intron 2 of 9) intron (NM_001354708, intron 2 of 9) 113960 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 245-66 chr11 25880139 25880286 + 2 NA Intergenic Intergenic -308911 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 365-230 chr20 18993235 18993469 + 2 NA Intergenic Intergenic -163149 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 206-6 chr1 46639680 46639834 + 2 NA intron (NM_001042546, intron 6 of 6) intron (NM_001042546, intron 6 of 6) -22866 NM_201403 148932 Hs.632401 NM_145279 ENSG00000142961 MOB3C MOB1E|MOBKL2C MOB kinase activator 3C protein-coding 493-236 chr5 15461624 15462047 + 2 NA Intergenic L1M3f|LINE|L1 -38345 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 370-302 chr3 17785246 17785580 + 2 NA Intergenic L1MA9|LINE|L1 42469 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 286-32 chr10 17283276 17283494 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -53400 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 338-603 chrX 63572110 63572364 + 2 NA Intergenic L1M5|LINE|L1 -11142 NR_152609 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 468-158 chr2 127790541 127791002 + 2 NA intron (NM_001006622, intron 1 of 5) AluJo|SINE|Alu 20400 NM_001006623 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 528-80 chr14 30394874 30395400 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -163986 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 284-413 chr8 105583817 105584031 + 2 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 264381 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 620-100 chr4 103641278 103641703 + 2 NA intron (NM_001059, intron 3 of 4) L1MA7|LINE|L1 78495 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 291-375 chr6 40193815 40193993 + 2 NA Intergenic Intergenic 162102 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 325-4 chr1 20247753 20247925 + 2 NA Intergenic Intergenic 4744 NR_147205 105376827 Hs.559701 NR_147205 ENSG00000228105 LINC01757 - long intergenic non-protein coding RNA 1757 ncRNA 300-408 chr6 161986168 161986384 + 2 NA intron (NM_013988, intron 2 of 8) MER66B|LTR|ERV1 515299 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 616-97 chr20 50974365 50974954 + 2 NA Intergenic AluJo|SINE|Alu 15841 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 672-31 chr15 95002606 95003243 + 2 NA Intergenic Intergenic 147561 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 220-7 chr1 70074396 70074580 + 2 NA intron (NM_001370785, intron 23 of 26) intron (NM_001370785, intron 23 of 26) 131091 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 321-571 chr8 119196450 119196686 + 2 NA Intergenic L1MC1|LINE|L1 -11795 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 262-263 chr21 29546449 29546676 + 2 NA intron (NM_001330993, intron 15 of 16) MamGypLTR2c|LTR|Gypsy -49478 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 276-239 chr2 136290865 136291050 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -172802 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 216-24 chr1 180755322 180755514 + 2 NA intron (NR_137330, intron 2 of 12) Tigger9b|DNA|TcMar-Tigger 123396 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 657-3 chr1 53557034 53557455 + 2 NA intron (NM_147193, intron 3 of 9) MIR|SINE|MIR 97845 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 247-6 chr1 66878321 66878514 + 2 NA intron (NM_024763, intron 4 of 16) L1MC3|LINE|L1 46439 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 255-220 chr2 196843611 196843749 + 2 NA intron (NM_001321099, intron 26 of 27) AluSg7|SINE|Alu -33404 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 432-302 chr9 115430301 115430624 + 2 NA Intergenic Intergenic 288644 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 388-51 chr10 87620926 87621231 + 2 NA Intergenic Intergenic -38800 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 463-211 chr4 60567904 60568205 + 2 NA Intergenic L1MA1|LINE|L1 -354565 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 207-308 chr9 21594199 21594382 + 2 NA Intergenic L1MB3|LINE|L1 -34492 NR_027054 554202 Hs.458096 NR_027054 MIR31HG LncHIFCAR|hsa-lnc-31 MIR31 host gene ncRNA 204-65 chr12 108697174 108697374 + 2 NA intron (NM_001105237, intron 2 of 10) intron (NM_001105237, intron 2 of 10) 5724 NM_001105237 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 415-218 chr5 74268789 74269128 + 2 NA Intergenic Intergenic 39367 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 244-81 chr13 93618503 93618693 + 2 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 239875 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 383-3 chr1 11350245 11350452 + 2 NA Intergenic Intergenic 77150 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 255-313 chr5 7016136 7016307 + 2 NA Intergenic Intergenic -188300 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 485-52 chr12 18733439 18733771 + 2 NA intron (NM_001330774, intron 3 of 14) L1MA10|LINE|L1 3904 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 334-134 chr13 106012301 106012568 + 2 NA Intergenic Intergenic 305604 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 551-105 chr20 43417676 43418108 + 2 NA Intergenic L1PB2|LINE|L1 -40004 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 688-34 chr12 125584227 125584736 + 2 NA intron (NM_052907, intron 5 of 8) MER113A|DNA|hAT-Charlie -37971 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 246-84 chr12 3353461 3353610 + 2 NA intron (NR_148995, intron 1 of 11) intron (NR_148995, intron 1 of 11) 12587 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 224-352 chr9 87439796 87439957 + 2 NA Intergenic MER34A|LTR|ERV1 -57352 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 260-13 chr1 105301827 105302033 + 2 NA Intergenic L1M1|LINE|L1 317005 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 539-157 chr4 65140227 65140639 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -135933 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 295-463 chr8 43709891 43710070 + 2 NA Intergenic ALR/Alpha|Satellite|centr 417538 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 122-30 chr21 17858521 17858603 + 2 NA intron (NR_024354, intron 1 of 2) intron (NR_024354, intron 1 of 2) 27046 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 369-79 chr12 27494164 27494384 + 2 NA intron (NM_001145010, intron 6 of 8) intron (NM_001145010, intron 6 of 8) 27464 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 301-304 chr4 27995536 27995752 + 2 NA Intergenic L1PA13|LINE|L1 778165 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 153-51 chr2 52039230 52039336 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -331365 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 289-431 chr7 13660339 13660580 + 2 NA Intergenic L1MB3|LINE|L1 326055 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 209-108 chr15 58002104 58002269 + 2 NA intron (NM_170696, intron 4 of 11) intron (NM_170696, intron 4 of 11) 11837 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 346-212 chr18 70308163 70308374 + 2 NA intron (NM_004232, intron 1 of 1) AluJo|SINE|Alu 19223 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 517-231 chr5 179281930 179282427 + 2 NA intron (NM_014244, intron 2 of 21) L1MB7|LINE|L1 63283 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 183-27 chr11 108173551 108173715 + 2 NA exon (NM_002519, exon 13 of 18) exon (NM_002519, exon 13 of 18) 49005 NM_001321307 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 339-448 chr5 67203094 67203339 + 2 NA Intergenic Intergenic -6417 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 466-262 chr8 49044500 49044796 + 2 NA Intergenic Intergenic -9688 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 567-45 chr12 54525222 54525644 + 2 NA intron (NM_001184976, intron 20 of 30) Tigger19a|DNA|TcMar-Tigger -23960 NM_001288768 5153 Hs.530871 NM_000924 ENSG00000123360 PDE1B HEL-S-79p|PDE1B1|PDES1B phosphodiesterase 1B protein-coding 217-400 chrX 90888428 90888580 + 2 NA Intergenic Intergenic -546335 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 251-162 chr2 31584373 31584558 + 2 NA Intergenic MER21C|LTR|ERVL -3527 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 428-33 chr10 132852711 132853132 + 2 NA intron (NM_001200049, intron 39 of 57) L1M5|LINE|L1 -66774 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B|SPAX8 NK6 homeobox 2 protein-coding 223-110 chr16 63782734 63782878 + 2 NA Intergenic Intergenic 1339257 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 340-278 chr2 128998544 128998748 + 2 NA Intergenic Intergenic 134046 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 325-518 chr7 138463578 138463808 + 2 NA intron (NM_003852, intron 1 of 18) intron (NM_003852, intron 1 of 18) 3434 NM_015905 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 509-105 chr19 30596669 30597121 + 2 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 224511 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 353-526 chr8 81922685 81922991 + 2 NA Intergenic Intergenic -80552 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 312-166 chr15 71081666 71081958 + 2 NA Intergenic Intergenic -59637 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 316-407 chr4 101481787 101482048 + 2 NA Intergenic L1MA4|LINE|L1 134140 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 371-294 chr4 165960229 165960553 + 2 NA intron (NM_001204760, intron 1 of 9) L1PA16|LINE|L1 87154 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 261-32 chr10 36652689 36652870 + 2 NA Intergenic Intergenic -473078 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 262-299 chr4 150320 150534 + 2 NA intron (NR_110527, intron 3 of 4) L1M3|LINE|L1 22306 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 256-315 chr5 30282523 30282714 + 2 NA Intergenic Intergenic 402058 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 501-6 chr1 84285185 84285527 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -13182 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 263-300 chr4 101480902 101481103 + 2 NA Intergenic Intergenic 133225 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 288-324 chr5 37848096 37848253 + 2 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 7736 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 440-59 chr13 85471084 85471426 + 2 NA intron (NR_046989, intron 1 of 3) intron (NR_046989, intron 1 of 3) 107652 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 340-234 chr2 6874901 6875184 + 2 NA Intergenic MER101-int|LTR|ERV1 -2735 NM_080657 91543 Hs.17518 NM_080657 ENSG00000134321 RSAD2 2510004L01Rik|cig33|cig5|vig1 radical S-adenosyl methionine domain containing 2 protein-coding 517-163 chr21 19410478 19410915 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 489059 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 636-98 chr3 110560819 110561365 + 2 NA Intergenic L1MA3|LINE|L1 508867 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 252-216 chr2 147158628 147158784 + 2 NA Intergenic LTR86A1|LTR|ERVL 571649 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 291-369 chr5 153815198 153815403 + 2 NA Intergenic Intergenic 83687 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 337-165 chr15 25362169 25362409 + 2 NA intron (NM_001354542, intron 5 of 11) intron (NM_001354542, intron 5 of 11) 75940 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 340-471 chr6 34430452 34430684 + 2 NA Intergenic Intergenic -4443 NM_001202470 100529239 Hs.188882 NM_001202470 ENSG00000270800 RPS10-NUDT3 - RPS10-NUDT3 readthrough protein-coding 249-37 chr10 19723297 19723536 + 2 NA intron (NR_120646, intron 1 of 4) intron (NR_120646, intron 1 of 4) 5134 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 556-134 chr20 60730057 60730422 + 2 NA Intergenic MIRb|SINE|MIR 165677 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 283-13 chr1 84316277 84316495 + 2 NA intron (NM_001134663, intron 2 of 3) L1MB1|LINE|L1 13735 NM_001134664 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 295-365 chr5 2881866 2882021 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -35911 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 306-483 chr7 97317988 97318167 + 2 NA Intergenic MER57B2|LTR|ERV1 201484 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 377-249 chr20 52205012 52205242 + 2 NA Intergenic Intergenic -13142 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 460-216 chr4 32237342 32237706 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -113514 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 298-392 chr6 40040956 40041116 + 2 NA Intergenic LTR16A|LTR|ERVL -106574 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 340-355 chr3 25169442 25169682 + 2 NA intron (NM_001290216, intron 3 of 10) HAL1|LINE|L1 -171240 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 770-11 chr12 39672058 39672668 + 2 NA intron (NM_001031748, intron 7 of 12) L1MA4A|LINE|L1 46180 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 613-18 chr10 101551282 101551764 + 2 NA intron (NM_001256856, intron 13 of 13) intron (NM_001256856, intron 13 of 13) 36734 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 184-65 chr15 50219127 50219257 + 2 NA intron (NM_001159629, intron 3 of 8) HAL1|LINE|L1 36996 NM_001159629 11001 Hs.11729 NM_003645 ENSG00000140284 SLC27A2 ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 solute carrier family 27 member 2 protein-coding 682-55 chr2 165424385 165424788 + 2 NA Intergenic Intergenic -45112 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 299-468 chr8 130891570 130891838 + 2 NA intron (NM_001115, intron 7 of 17) intron (NM_001115, intron 7 of 17) 149205 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 483-60 chr14 40827631 40828076 + 2 NA Intergenic L1PREC2|LINE|L1 -126858 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 130-35 chr2 700742 700827 + 2 NA Intergenic L1MEg|LINE|L1 -23378 NM_001352680 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 271-484 chr9 105560477 105560675 + 2 NA intron (NM_001351498, intron 1 of 9) L1ME4a|LINE|L1 2445 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 306-417 chr5 175203845 175204080 + 2 NA Intergenic L1MB1|LINE|L1 -208231 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 313-178 chr16 5701004 5701311 + 2 NA Intergenic Intergenic 68690 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 225-160 chr2 95142258 95142433 + 2 NA Intergenic MER89-int|LTR|ERV1 17240 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 737-65 chr5 41010683 41011173 + 2 NA intron (NM_173489, intron 30 of 41) L1MC1|LINE|L1 60414 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 443-281 chr7 65400133 65400515 + 2 NA 3' UTR (NM_001287533, exon 5 of 5) 3' UTR (NM_001287533, exon 5 of 5) 26469 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 149-64 chr3 5545738 5545850 + 2 NA Intergenic L1MA8|LINE|L1 -295539 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 153-104 chr9 125978748 125978844 + 2 NA Intergenic L1MC1|LINE|L1 230613 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 475-101 chr16 72320304 72320613 + 2 NA intron (NR_126330, intron 9 of 13) THE1D-int|LTR|ERVL-MaLR -148008 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 191-114 chr2 188232657 188232783 + 2 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 54971 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 201-250 chr8 139266268 139266392 + 2 NA Intergenic Intergenic -352289 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 329-349 chr3 10852598 10852887 + 2 NA intron (NM_014229, intron 5 of 13) intron (NM_014229, intron 5 of 13) 36514 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 392-279 chr6 79246233 79246483 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -11676 NM_001201363 9324 Hs.77558 NM_004242 ENSG00000118418 HMGN3 PNAS-24|PNAS-25|TRIP7 high mobility group nucleosomal binding domain 3 protein-coding 760-33 chr2 123649239 123649776 + 2 NA Intergenic Intergenic 375667 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 253-175 chr2 27286789 27287032 + 2 NA intron (NM_187841, intron 1 of 8) intron (NM_187841, intron 1 of 8) 4481 NM_032546 57159 Hs.516036 NM_032546 ENSG00000138100 TRIM54 MURF|MURF-3|RNF30|muRF3 tripartite motif containing 54 protein-coding 515-237 chr6 102795810 102796162 + 2 NA Intergenic Intergenic 1397001 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 310-438 chr5 180277603 180277866 + 2 NA intron (NM_001364608, intron 3 of 12) intron (NM_001364608, intron 3 of 12) 2874 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 262-57 chr10 82487122 82487369 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -254325 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 274-404 chr8 132340803 132341062 + 2 NA intron (NM_004519, intron 1 of 14) MER3|DNA|hAT-Charlie 106330 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 419-195 chr3 144100774 144101151 + 2 NA Intergenic Intergenic 127881 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 450-45 chr11 12296138 12296420 + 2 NA intron (NM_032867, intron 3 of 8) intron (NM_032867, intron 3 of 8) 9379 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 464-63 chr14 57719954 57720263 + 2 NA intron (NR_159373, intron 1 of 10) L1MA2|LINE|L1 144891 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 290-451 chr8 89487621 89487901 + 2 NA Intergenic Intergenic 269950 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 505-54 chr11 117116549 117117022 + 2 NA Intergenic AluJb|SINE|Alu -18357 NM_025164 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 339-366 chr3 83589101 83589349 + 2 NA Intergenic L1MA4|LINE|L1 1280350 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 457-7 chr1 90317207 90317617 + 2 NA Intergenic L1MD1|LINE|L1 322302 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 371-28 chr1 211903933 211904167 + 2 NA Intergenic Intergenic 73089 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 183-25 chr11 80913029 80913166 + 2 NA Intergenic L2a|LINE|L2 -150294 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 252-279 chr3 139175000 139175200 + 2 NA Intergenic MER20|DNA|hAT-Charlie 58422 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 413-321 chr9 31074686 31075044 + 2 NA Intergenic MIRb|SINE|MIR 306625 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 211-59 chr12 14494401 14494558 + 2 NA intron (NM_181352, intron 13 of 14) (TA)n|Simple_repeat|Simple_repeat -73253 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 312-405 chr5 18416725 18416972 + 2 NA Intergenic L2|LINE|L2 609574 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 324-324 chr21 28545504 28545689 + 2 NA Intergenic Intergenic 6278 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 447-234 chr6 120534982 120535324 + 2 NA Intergenic Intergenic 519974 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 369-22 chr1 208385898 208386152 + 2 NA Intergenic MLT2B4|LTR|ERVL -141641 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 578-190 chr9 22423129 22423624 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -23448 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 408-198 chr22 19590016 19590351 + 2 NA Intergenic L1MB4|LINE|L1 -23344 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 323-354 chr3 192942660 192942849 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -24898 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 359-389 chr5 50183972 50184170 + 2 NA Intergenic ALR/Alpha|Satellite|centr 257217 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 273-223 chr2 81865441 81865672 + 2 NA Intergenic Intergenic -398610 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 350-6 chr1 69138835 69139074 + 2 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 83056 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 289-292 chr3 25735835 25736033 + 2 NA intron (NM_001145293, intron 7 of 11) L1MA10|LINE|L1 47509 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 380-35 chr10 21724221 21724489 + 2 NA intron (NM_001195626, intron 14 of 22) intron (NM_001195626, intron 14 of 22) 190183 NM_001195630 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 231-205 chr22 27702524 27702750 + 2 NA Intergenic MER113|DNA|hAT-Charlie 99119 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 345-99 chr11 102237199 102237468 + 2 NA Intergenic Intergenic -80151 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 171-69 chr21 25239797 25239956 + 2 NA Intergenic L1MB2|LINE|L1 191825 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 222-288 chr5 41390539 41390696 + 2 NA intron (NM_001005473, intron 1 of 2) L1ME1|LINE|L1 119984 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 310-464 chr6 153368950 153369235 + 2 NA Intergenic L1ME1|LINE|L1 -237810 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 263-319 chr5 27660307 27660455 + 2 NA Intergenic Intergenic 188089 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 294-258 chr20 24674590 24674865 + 2 NA Intergenic MIRb|SINE|MIR 204766 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 429-71 chr12 86035090 86035393 + 2 NA intron (NM_001351283, intron 2 of 5) L1PA7|LINE|L1 160946 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 243-47 chr10 67138792 67138956 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 126608 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 639-57 chr2 49533178 49533572 + 2 NA Intergenic L1M4|LINE|L1 -378848 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 216-261 chr4 141594945 141595118 + 2 NA Intergenic Intergenic -41552 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 294-415 chr6 125349143 125349345 + 2 NA Intergenic Intergenic -47277 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 553-26 chr11 26894575 26894946 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -99352 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 303-388 chr5 181092401 181092628 + 2 NA Intergenic Intergenic 32790 NM_001258283 26693 Hs.742585 NM_001258283 ENSG00000185372 OR2V1 OR2V1P|OST265 olfactory receptor family 2 subfamily V member 1 protein-coding 440-184 chr4 116035404 116035773 + 2 NA Intergenic MIR|SINE|MIR -264137 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 288-46 chr10 42977262 42977537 + 2 NA Intergenic Intergenic 4108 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 633-10 chr10 15464283 15464649 + 2 NA Intergenic L1M4a1|LINE|L1 -93177 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 302-18 chr1 164788430 164788667 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) -13907 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 540-13 chr1 88422444 88422969 + 2 NA Intergenic L1M2|LINE|L1 -261438 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 571-77 chr2 80858742 80859158 + 2 NA Intergenic MamRep1527|LTR|LTR 545571 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 422-180 chr3 43926040 43926339 + 2 NA Intergenic Intergenic -188023 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 264-330 chr5 90479631 90479858 + 2 NA intron (NM_001370351, intron 1 of 7) intron (NM_001370351, intron 1 of 7) 4880 NM_001370353 10622 Hs.282387 NM_006467 ENSG00000113356 POLR3G RPC32|RPC7 RNA polymerase III subunit G protein-coding 486-263 chr6 119797255 119797667 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) -217718 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 390-73 chr12 38835704 38835957 + 2 NA intron (NM_153634, intron 5 of 19) intron (NM_153634, intron 5 of 19) 69761 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 343-372 chr3 193139701 193140006 + 2 NA Intergenic HAL1|LINE|L1 -101369 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 494-82 chr16 13271875 13272248 + 2 NA Intergenic AluSq2|SINE|Alu 370463 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 400-324 chr7 52308012 52308263 + 2 NA Intergenic Intergenic -727496 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 245-73 chr11 42954646 42954880 + 2 NA Intergenic LTR33B|LTR|ERVL 314606 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 288-140 chr16 12476933 12477125 + 2 NA intron (NM_032167, intron 18 of 20) intron (NM_032167, intron 18 of 20) -243292 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 327-96 chr11 104406481 104406713 + 2 NA Intergenic Intergenic 202705 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 278-133 chr15 68529275 68529468 + 2 NA intron (NM_001324014, intron 1 of 12) intron (NM_001324014, intron 1 of 12) 10998 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 189-225 chr9 75386342 75386521 + 2 NA Intergenic L1MA9|LINE|L1 297917 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 414-249 chr4 147567311 147567594 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -49945 NM_018241 55751 Hs.203896 NM_018241 ENSG00000164168 TMEM184C TMEM34 transmembrane protein 184C protein-coding 211-151 chr2 154184406 154184573 + 2 NA intron (NM_052917, intron 4 of 12) L1M4c|LINE|L1 240095 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 168-97 chr6 77805109 77805242 + 2 NA intron (NM_001282136, intron 3 of 4) intron (NM_001282136, intron 3 of 4) 152136 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 425-303 chr8 90423692 90424010 + 2 NA Intergenic L1MA4|LINE|L1 182212 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 252-66 chr11 38308241 38308386 + 2 NA Intergenic L1ME3A|LINE|L1 338043 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 193-29 chr10 55653454 55653634 + 2 NA Intergenic Intergenic -25602 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 190-30 chr11 107196446 107196605 + 2 NA Intergenic Intergenic -178049 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 326-63 chr10 43494919 43495133 + 2 NA Intergenic Intergenic 57915 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 329-550 chr7 122234197 122234386 + 2 NA Intergenic Intergenic -69367 NR_036484 154860 Hs.664204 NR_036484 ENSG00000230316 FEZF1-AS1 - FEZF1 antisense RNA 1 ncRNA 610-172 chr8 113392983 113393320 + 2 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) -15999 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 453-248 chr7 27321205 27321633 + 2 NA Intergenic Intergenic -74190 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 625-84 chr5 71740255 71740623 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 21164 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 509-263 chr8 134957365 134957858 + 2 NA Intergenic Intergenic 107676 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 573-150 chr5 110170964 110171362 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 287981 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 376-136 chr17 21539087 21539342 + 2 NA intron (NR_160801, intron 1 of 1) L1MD3|LINE|L1 12464 NR_160801 339263 Hs.514016 NM_001113434 ENSG00000212719 LINC02693 C17orf51 long intergenic non-protein coding RNA 2693 ncRNA 668-58 chr21 35339460 35339977 + 2 NA Intergenic Intergenic 241046 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 172-51 chr19 32276322 32276424 + 2 NA Intergenic L1ME2|LINE|L1 -69237 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 482-225 chr6 61882306 61882647 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 308346 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 502-72 chr12 119514659 119515031 + 2 NA intron (NM_178499, intron 7 of 13) Tigger3b|DNA|TcMar-Tigger -78929 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 589-97 chr3 161463703 161464130 + 2 NA Intergenic L1M2|LINE|L1 -32892 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 388-233 chr3 118156462 118156738 + 2 NA Intergenic L1MA7|LINE|L1 -465675 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 163-56 chr17 61877849 61877958 + 2 NA exon (NM_020748, exon 18 of 25) exon (NM_020748, exon 18 of 25) -14344 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 482-30 chr10 5163709 5164056 + 2 NA intron (NR_027916, intron 1 of 7) intron (NR_027916, intron 1 of 7) 21305 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 429-128 chr18 53031987 53032299 + 2 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -204958 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 293-436 chr8 82925626 82925782 + 2 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 13600 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 550-125 chr2 187864575 187864946 + 2 NA Intergenic LTR16A2|LTR|ERVL -310255 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 207-300 chr8 117275689 117275885 + 2 NA Intergenic MIR|SINE|MIR 140792 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 542-51 chr13 50735275 50735640 + 2 NA intron (NM_198989, intron 1 of 1) L1PREC2|LINE|L1 -72398 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 205-259 chr7 44541631 44541790 + 2 NA promoter-TSS (NM_001101648) promoter-TSS (NM_001101648) -380 NM_001101648 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 561-140 chr3 180735396 180735746 + 2 NA intron (NR_109986, intron 8 of 13) intron (NR_109986, intron 8 of 13) -56082 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 498-56 chr11 94669526 94669955 + 2 NA intron (NR_135096, intron 4 of 6) intron (NR_135096, intron 4 of 6) 70615 NR_135094 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 357-446 chr8 95745758 95745984 + 2 NA intron (NR_038205, intron 2 of 2) AluJb|SINE|Alu 202477 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 511-262 chr8 100833313 100833654 + 2 NA Intergenic MER39|LTR|ERV1 -111395 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 448-153 chr3 10717658 10718070 + 2 NA Intergenic Intergenic 46345 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 271-492 chrX 101880462 101880616 + 2 NA Intergenic L3b|LINE|CR1 -22962 NR_159739 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 414-228 chr4 43491797 43492106 + 2 NA intron (NR_146993, intron 1 of 2) L2a|LINE|L2 592 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 405-52 chr11 121039080 121039348 + 2 NA intron (NM_001363644, intron 2 of 8) L2b|LINE|L2 15142 NM_001130047 219899 Hs.504136 NM_152715 ENSG00000154114 TBCEL El|LRRC35 tubulin folding cofactor E like protein-coding 397-74 chr13 83017568 83017888 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 864665 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 214-232 chr4 38784613 38784757 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -1695 NM_001195107 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 177-114 chr4 44731829 44731953 + 2 NA Intergenic L1MB7|LINE|L1 -5257 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 202-92 chr17 5890643 5890818 + 2 NA intron (NR_040000, intron 3 of 3) LTR78|LTR|ERV1 118496 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 545-84 chr16 64678434 64678789 + 2 NA Intergenic Intergenic 443452 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 288-367 chr6 54592833 54593091 + 2 NA Intergenic Intergenic -253809 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 292-303 chr4 6060958 6061180 + 2 NA intron (NM_144720, intron 10 of 12) MER102c|DNA|hAT-Charlie -42523 NM_001364690 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 203-149 chr3 72667961 72668093 + 2 NA Intergenic L2b|LINE|L2 -3778 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 290-187 chr19 9941276 9941503 + 2 NA Intergenic Intergenic -4874 NM_058164 93145 Hs.169743 NM_058164 ENSG00000105088 OLFM2 NOE2|NOELIN2|NOELIN2_V1|OlfC olfactomedin 2 protein-coding 362-111 chr12 37752422 37752642 + 2 NA Intergenic ALR/Alpha|Satellite|centr -564242 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 325-184 chr15 80626609 80626869 + 2 NA Intergenic Intergenic 45636 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 309-170 chr15 36008510 36008719 + 2 NA Intergenic L1M4|LINE|L1 81758 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 239-41 chr10 81507915 81508152 + 2 NA Intergenic L2a|LINE|L2 -367161 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 228-282 chr5 158708860 158709021 + 2 NA intron (NM_001364155, intron 13 of 14) intron (NM_001364155, intron 13 of 14) -299167 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 256-180 chr19 28829636 28829813 + 2 NA Intergenic Intergenic -102030 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 370-407 chr7 4866321 4866528 + 2 NA intron (NM_018059, intron 2 of 14) L2b|LINE|L2 -4394 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 340-319 chr20 39294744 39295076 + 2 NA Intergenic Intergenic -70162 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 175-131 chr5 64987078 64987229 + 2 NA intron (NM_005869, intron 13 of 13) L1MEf|LINE|L1 218223 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 327-450 chr7 21941371 21941579 + 2 NA intron (NM_001127370, intron 1 of 10) intron (NM_001127370, intron 1 of 10) 4424 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 241-406 chr8 129280663 129280824 + 2 NA Intergenic MIRc|SINE|MIR -39503 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 653-59 chr19 29149840 29150415 + 2 NA Intergenic L2a|LINE|L2 63024 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 366-32 chr1 221428498 221428771 + 2 NA Intergenic L1M4|LINE|L1 -92338 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 378-443 chr8 125778543 125778911 + 2 NA Intergenic L2b|LINE|L2 172470 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 375-292 chr4 82084735 82084952 + 2 NA Intergenic Intergenic 289148 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 633-85 chr4 43577620 43578078 + 2 NA Intergenic L1MA9|LINE|L1 -85306 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 202-215 chr5 128724294 128724408 + 2 NA Intergenic Intergenic -186106 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 370-269 chr20 32937954 32938213 + 2 NA intron (NM_001143967, intron 22 of 26) L1MB8|LINE|L1 66350 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 359-433 chr6 118100218 118100520 + 2 NA intron (NM_001029858, intron 1 of 7) MER77B|LTR|ERVL 14466 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 249-390 chr7 93552728 93552962 + 2 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 6965 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 301-107 chr13 92053195 92053376 + 2 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 298922 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 559-204 chrUn_KI270756v1 27515 27985 + 2 NA NA (CCATTCCATT)n|Simple_repeat|Simple_repeat NA NA 328-546 chr7 104077615 104077874 + 2 NA Intergenic MIR|SINE|MIR -88086 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 321-615 chrX 76755041 76755273 + 2 NA intron (NR_110400, intron 1 of 3) L1MA4A|LINE|L1 164203 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 338-81 chr10 110143661 110143894 + 2 NA Intergenic MIRb|SINE|MIR -63828 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 270-2 chr1 5399905 5400148 + 2 NA Intergenic Intergenic 462715 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 254-126 chr15 46272513 46272730 + 2 NA Intergenic MER81|DNA|hAT-Blackjack 567426 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 185-208 chr8 136550893 136551028 + 2 NA intron (NR_147196, intron 2 of 5) L1M5|LINE|L1 20162 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 348-117 chr12 97567636 97567874 + 2 NA Intergenic L2a|LINE|L2 3943 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 533-57 chr15 46179159 46179555 + 2 NA Intergenic L1M2|LINE|L1 474162 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 327-45 chr10 52066052 52066244 + 2 NA intron (NM_001098512, intron 7 of 17) L2|LINE|L2 247980 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 138-29 chr17 53906303 53906385 + 2 NA Intergenic Intergenic 83417 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 238-259 chr4 36003676 36003889 + 2 NA Intergenic Intergenic 240157 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 415-220 chr5 97670213 97670491 + 2 NA intron (NR_105028, intron 3 of 3) L2|LINE|L2 165656 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 308-467 chr7 68384591 68384754 + 2 NA Intergenic L1MEf|LINE|L1 364419 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 293-273 chr3 120811479 120811716 + 2 NA TTS (NR_135570) TTS (NR_135570) 24760 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 403-195 chr3 35907547 35907941 + 2 NA Intergenic Intergenic 163268 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 560-125 chr4 62736494 62736979 + 2 NA Intergenic Intergenic -574971 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 341-145 chr14 53675411 53675707 + 2 NA Intergenic L1MEc|LINE|L1 272925 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 341-147 chr14 62553401 62553610 + 2 NA Intergenic L1MC3|LINE|L1 -413532 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 215-174 chr20 52685782 52685977 + 2 NA Intergenic Intergenic 65041 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 409-148 chr2 115871912 115872291 + 2 NA Intergenic Intergenic 528286 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 148-33 chr15 100035389 100035503 + 2 NA intron (NM_139057, intron 18 of 21) intron (NM_139057, intron 18 of 21) 228423 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 366-236 chr2 188799763 188800086 + 2 NA Intergenic L1MC5a|LINE|L1 -9801 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 385-87 chr13 99760789 99761026 + 2 NA intron (NR_120421, intron 3 of 4) L1MA4|LINE|L1 -31906 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 239-385 chr7 116273556 116273747 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 13013 NR_130923 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 291-8 chr1 81429297 81429518 + 2 NA intron (NM_001366004, intron 2 of 27) intron (NM_001366004, intron 2 of 27) 123012 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 342-184 chr16 77620063 77620362 + 2 NA Intergenic L1MEf|LINE|L1 -102280 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 386-111 chr14 87706703 87706981 + 2 NA Intergenic Intergenic -51548 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 213-178 chr3 62582824 62583007 + 2 NA intron (NM_003716, intron 8 of 29) intron (NM_003716, intron 8 of 29) -209365 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 274-200 chr2 48058947 48059175 + 2 NA Intergenic MER41-int|LTR|ERV1 -153268 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 466-61 chr12 41304549 41304864 + 2 NA intron (NM_001164595, intron 3 of 9) L2c|LINE|L2 116386 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 205-251 chr6 147998645 147998814 + 2 NA Intergenic AluJb|SINE|Alu -273599 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 352-262 chr2 182585758 182585996 + 2 NA Intergenic Intergenic -63032 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 474-276 chr8 18112407 18112841 + 2 NA Intergenic L1MA5A|LINE|L1 -27663 NM_004315 427 Hs.527412 NM_004315 ENSG00000104763 ASAH1 AC|ACDase|ASAH|PHP|PHP32|SMAPME N-acylsphingosine amidohydrolase 1 protein-coding 341-267 chr2 143244761 143244939 + 2 NA intron (NM_018460, intron 5 of 13) intron (NM_018460, intron 5 of 13) 115431 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 234-222 chr22 27223796 27223939 + 2 NA intron (NM_001350812, intron 2 of 2) L2a|LINE|L2 812 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 646-91 chr3 146692864 146693243 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -86837 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 426 chr1 12337095 12337369 + 2 NA intron (NM_018156, intron 39 of 68) intron (NM_018156, intron 39 of 68) 107202 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 458-84 chr15 26454028 26454303 + 2 NA Intergenic Intergenic 174925 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 406-198 chr3 191541065 191541389 + 2 NA intron (NR_120606, intron 1 of 6) MER31B|LTR|ERV1 80064 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 321-82 chr10 126007250 126007547 + 2 NA intron (NM_001363549, intron 7 of 10) MIRb|SINE|MIR -34125 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 356-46 chr10 42979112 42979389 + 2 NA intron (NR_126352, intron 2 of 2) intron (NR_126352, intron 2 of 2) 2257 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 435-202 chr5 107387695 107387937 + 2 NA intron (NM_001962, intron 2 of 4) intron (NM_001962, intron 2 of 4) 283121 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 333-560 chr8 46859214 46859524 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 18483 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 344-297 chr22 47096146 47096338 + 2 NA intron (NM_001284305, intron 11 of 12) intron (NM_001284305, intron 11 of 12) -180200 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 286-428 chr7 68340586 68340764 + 2 NA Intergenic MER58D|DNA|hAT-Charlie 320422 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 254-426 chr8 123872567 123872778 + 2 NA intron (NM_001039112, intron 1 of 40) L1MC3|LINE|L1 20685 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 608-102 chr3 146987188 146987728 + 2 NA Intergenic L2a|LINE|L2 65535 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 368-258 chr2 236858283 236858489 + 2 NA Intergenic L2|LINE|L2 197781 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 260-370 chr6 48955396 48955638 + 2 NA Intergenic L2|LINE|L2 507736 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 484-126 chr2 52155470 52155770 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -215028 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 482-101 chr17 73699096 73699378 + 2 NA Intergenic Intergenic -38617 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 230-196 chr2 214661801 214662026 + 2 NA Intergenic Intergenic 147770 NR_104216 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 219-265 chr4 136152773 136152922 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -239167 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 302-123 chr14 46272638 46272844 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -198618 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 219-55 chr11 84704727 84704895 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 16131 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 420-256 chr6 126386594 126386838 + 2 NA intron (NR_104462, intron 2 of 3) intron (NR_104462, intron 2 of 3) 46601 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 345-448 chr5 163042469 163042811 + 2 NA Intergenic L1MA4|LINE|L1 -394931 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 212-317 chr8 16716459 16716664 + 2 NA Intergenic Intergenic 285784 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 341-382 chr4 76581521 76581797 + 2 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 6108 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 437-256 chr7 54827500 54827747 + 2 NA Intergenic L1PA15|LINE|L1 68310 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 316-60 chr10 25752676 25752855 + 2 NA Intergenic L2a|LINE|L2 101053 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 241-336 chr6 81628893 81629092 + 2 NA Intergenic L1MEd|LINE|L1 123689 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 372-402 chr5 68608693 68609037 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 316288 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 767-24 chr2 72684520 72685123 + 2 NA intron (NR_135774, intron 6 of 19) L1ME2z|LINE|L1 141212 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 173-47 chr16 60263097 60263207 + 2 NA Intergenic L1MEf|LINE|L1 96641 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 262-462 chrX 10900335 10900548 + 2 NA Intergenic Intergenic -66758 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 259-59 chr10 91590211 91590373 + 2 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 21168 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 549-207 chr8 50329549 50330016 + 2 NA intron (NR_135797, intron 2 of 20) THE1D-int|LTR|ERVL-MaLR 165651 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 218-36 chr10 111616342 111616489 + 2 NA Intergenic L1ME3A|LINE|L1 502124 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 356-39 chr10 6873447 6873649 + 2 NA Intergenic Intergenic 93950 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 304-336 chr3 68806510 68806766 + 2 NA intron (NM_001005527, intron 3 of 5) MLT1A|LTR|ERVL-MaLR 125909 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 159-46 chr2 142485512 142485643 + 2 NA Intergenic Intergenic -353876 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 495-30 chr10 81979342 81979742 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 101855 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 302-301 chr3 171015993 171016278 + 2 NA intron (NM_001278659, intron 2 of 9) L4_A_Mam|LINE|RTE-X 10585 NM_000340 6514 Hs.167584 NM_000340 ENSG00000163581 SLC2A2 GLUT2 solute carrier family 2 member 2 protein-coding 272-126 chr14 90472348 90472566 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 17227 NR_033986 400238 Hs.131037 NR_033986 ENSG00000233208 LINC00642 - long intergenic non-protein coding RNA 642 ncRNA 318-543 chr8 78134618 78134778 + 2 NA Intergenic Intergenic -381642 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 308-119 chr12 125168626 125168819 + 2 NA Intergenic LTR103_Mam|LTR|ERV1? -17664 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 121-72 chr9 69512838 69512948 + 2 NA intron (NM_001163, intron 2 of 12) intron (NM_001163, intron 2 of 12) 159478 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 544-76 chr15 57293028 57293457 + 2 NA Intergenic L1MA8|LINE|L1 -7123 NR_024433 283663 Hs.181297 NR_024433 ENSG00000247982 LINC00926 - long intergenic non-protein coding RNA 926 ncRNA 461-129 chr2 64661609 64661978 + 2 NA Intergenic Intergenic -7880 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 211-113 chr17 62886535 62886695 + 2 NA Intergenic Intergenic -57600 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 205-134 chr2 26375464 26375652 + 2 NA intron (NR_137633, intron 6 of 9) intron (NR_137633, intron 6 of 9) -26362 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 351-224 chr2 106943404 106943584 + 2 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -56385 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 209-163 chr2 192115451 192115596 + 2 NA intron (NM_001305134, intron 4 of 9) L1MA9|LINE|L1 79410 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 316-38 chr1 212536972 212537256 + 2 NA Intergenic Intergenic -8580 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 423-181 chr3 113648345 113648622 + 2 NA TTS (NR_111981) TTS (NR_111981) 48159 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 401-16 chr1 223379494 223379781 + 2 NA Intergenic Intergenic -13778 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 212-236 chr4 74799799 74800002 + 2 NA Intergenic Intergenic -5377 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 420-270 chr7 78152626 78152904 + 2 NA intron (NM_001301128, intron 15 of 20) intron (NM_001301128, intron 15 of 20) -194477 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 577-66 chr15 59343052 59343470 + 2 NA intron (NM_004998, intron 1 of 27) L1M1|LINE|L1 29610 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 472-168 chr2 129137747 129138164 + 2 NA Intergenic L1MCa|LINE|L1 135936 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 537-13 chr1 163021389 163021789 + 2 NA Intergenic L1MA2|LINE|L1 -47017 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 258-144 chr15 66583528 66583767 + 2 NA intron (NR_110372, intron 1 of 4) L1MEg|LINE|L1 1457 NR_110372 102723165 Hs.636703 NR_110372 ENSG00000259471 LINC01169 - long intergenic non-protein coding RNA 1169 ncRNA 572-43 chr12 83308525 83309071 + 2 NA Intergenic L1MC4|LINE|L1 621643 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 324-502 chr7 86347564 86347866 + 2 NA Intergenic Intergenic -296194 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 543-134 chr2 166208194 166208561 + 2 NA intron (NM_001365536, intron 24 of 26) MIR|SINE|MIR -59216 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 463-199 chr3 163255431 163255761 + 2 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 47705 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 350-184 chr17 69448850 69449115 + 2 NA intron (NM_002758, intron 1 of 11) intron (NM_002758, intron 1 of 11) 34285 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 274-361 chr7 94175482 94175738 + 2 NA Intergenic Intergenic -171255 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 545-218 chr7 9375860 9376243 + 2 NA Intergenic Intergenic -258219 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 523-173 chr3 23366547 23366889 + 2 NA intron (NM_001370225, intron 3 of 5) L1PA14|LINE|L1 163391 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 622-11 chr10 131447179 131447616 + 2 NA Intergenic Intergenic -135676 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 181-112 chr4 139837995 139838137 + 2 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 172247 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 338-484 chr6 169373049 169373362 + 2 NA Intergenic Intergenic -119091 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 311-191 chr17 11268604 11268902 + 2 NA intron (NM_001173461, intron 2 of 3) L2a|LINE|L2 27330 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 340-24 chr1 164084943 164085140 + 2 NA Intergenic L1M5|LINE|L1 -474319 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 562-169 chr5 24817821 24818214 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 22566 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 197-183 chr6 86309920 86310096 + 2 NA Intergenic L1M1|LINE|L1 -627520 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 326-53 chr1 237327596 237327878 + 2 NA intron (NM_001035, intron 2 of 104) MIR|SINE|MIR -143382 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 282-366 chr5 23611607 23611882 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 104089 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 175-56 chr15 98359781 98359926 + 2 NA intron (NR_146567, intron 1 of 2) Tigger2b_Pri|DNA|TcMar-Tigger -28295 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 451-179 chr5 96225464 96225784 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 146486 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 298-301 chr3 90291427 90291674 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1183929 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 324-125 chr12 103310350 103310657 + 2 NA intron (NM_001099336, intron 4 of 5) MER102a|DNA|hAT-Charlie 158661 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 670-62 chr2 72857718 72858217 + 2 NA Intergenic HAL1|LINE|L1 -29441 NM_003124 6697 Hs.301540 NM_003124 ENSG00000116096 SPR SDR38C1 sepiapterin reductase protein-coding 193-45 chr12 24863486 24863647 + 2 NA intron (NM_001178091, intron 4 of 9) L3|LINE|CR1 38656 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 231-386 chrX 91277873 91278012 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -156897 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 534-136 chr2 199234414 199234841 + 2 NA Intergenic L1MC2|LINE|L1 223312 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 379-302 chr6 130273340 130273617 + 2 NA intron (NM_001258275, intron 2 of 13) L1M1|LINE|L1 -50527 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 314-500 chr6 40242452 40242669 + 2 NA Intergenic L1MB4|LINE|L1 113446 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 417-286 chr8 110022762 110023103 + 2 NA Intergenic Intergenic -47161 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 217-394 chr9 98896992 98897193 + 2 NA Intergenic L1MEb|LINE|L1 -46815 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 358-47 chr10 61046550 61046871 + 2 NA Intergenic Intergenic 30435 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 157-23 chr11 25375497 25375633 + 2 NA Intergenic Zaphod3|DNA|hAT-Tip100 -813558 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 242-231 chr3 14033499 14033646 + 2 NA intron (NR_002223, intron 1 of 2) L1PREC2|LINE|L1 91298 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 251-93 chr14 52249932 52250173 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 -17646 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 473-137 chr2 99903813 99904182 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 201586 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 130-12 chr10 98810564 98810641 + 2 NA intron (NM_021828, intron 3 of 11) L2a|LINE|L2 113966 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 340-566 chr9 28952173 28952384 + 2 NA intron (NM_001354574, intron 1 of 5) MIR1_Amn|SINE|MIR -63323 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 364-269 chr3 10891388 10891598 + 2 NA intron (NM_014229, intron 6 of 13) Charlie22a|DNA|hAT-Charlie 75265 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 442-157 chr20 18411079 18411464 + 2 NA intron (NM_001367611, intron 13 of 20) L1M4b|LINE|L1 32222 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 667-125 chr9 28478486 28478951 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 240587 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 250-207 chr2 75365429 75365606 + 2 NA Intergenic L1PA16|LINE|L1 -158551 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 293-434 chr8 81589917 81590204 + 2 NA Intergenic Charlie14a|DNA|hAT-Charlie 41217 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 528-48 chr11 30186933 30187257 + 2 NA Intergenic L2a|LINE|L2 -43919 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 150-31 chr13 57080168 57080245 + 2 NA Intergenic Intergenic -60712 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 392-240 chr4 168349173 168349398 + 2 NA Intergenic L1PA14|LINE|L1 -30533 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 375-453 chr9 83285233 83285473 + 2 NA intron (NM_001244960, intron 13 of 13) MamRep1879|DNA|hAT-Tip100? -18085 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 661-95 chr9 110937340 110937831 + 2 NA intron (NM_001351417, intron 5 of 5) intron (NM_001351417, intron 5 of 5) 99195 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 445-99 chr18 12560718 12560978 + 2 NA intron (NM_020148, intron 2 of 15) AluSz|SINE|Alu 95884 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 214-41 chr10 66460268 66460451 + 2 NA intron (NM_001127384, intron 11 of 17) Charlie10a|DNA|hAT-Charlie -465677 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 379-282 chr5 179402387 179402654 + 2 NA Intergenic L1MD2|LINE|L1 -57059 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 257-118 chr14 84943426 84943659 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -328390 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 378-77 chr11 48217889 48218137 + 2 NA TTS (NM_001005470) TTS (NM_001005470) 1203 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 422-309 chr9 72240044 72240393 + 2 NA intron (NM_001351573, intron 10 of 14) intron (NM_001351573, intron 10 of 14) -65218 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 364-69 chr10 85671696 85672038 + 2 NA intron (NM_017551, intron 12 of 15) Tigger1|DNA|TcMar-Tigger 94136 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 553-21 chr10 85270817 85271133 + 2 NA Intergenic L1MB5|LINE|L1 -72037 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 225-154 chr2 59419109 59419305 + 2 NA Intergenic L1M5|LINE|L1 201499 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 257-347 chr6 54744817 54744997 + 2 NA Intergenic L1M2|LINE|L1 -101864 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 352-462 chr6 80845179 80845454 + 2 NA Intergenic L1M2|LINE|L1 738645 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 429-160 chr2 123854684 123855038 + 2 NA Intergenic L1MB3|LINE|L1 170313 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 350-23 chr1 172858383 172858658 + 2 NA Intergenic LTR85c|LTR|Gypsy? 192443 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 206-63 chr14 46502177 46502339 + 2 NA TTS (NR_102701) TTS (NR_102701) 30899 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 260-114 chr13 42035392 42035602 + 2 NA Intergenic L1MEd|LINE|L1 -4539 NM_001204504 160851 Hs.630380 NM_152910 ENSG00000102780 DGKH DGKeta diacylglycerol kinase eta protein-coding 243-33 chr10 20715372 20715582 + 2 NA Intergenic Intergenic 163507 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 370-56 chr10 79955948 79956207 + 2 NA Intergenic Intergenic -6972 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 281-342 chr5 3646676 3646918 + 2 NA Intergenic L1PA16|LINE|L1 50965 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 270-352 chr7 26918352 26918533 + 2 NA Intergenic Intergenic -53852 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 224-65 chr12 65430379 65430515 + 2 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 126864 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 285-112 chr14 42532424 42532691 + 2 NA Intergenic AluSx3|SINE|Alu 925701 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 571-185 chr9 25622757 25623245 + 2 NA Intergenic Intergenic 55857 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 432-152 chr2 228061242 228061522 + 2 NA intron (NM_030623, intron 3 of 10) AluSz|SINE|Alu 120263 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 625-125 chr8 141939908 141940449 + 2 NA Intergenic Intergenic -153865 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 211-71 chr13 33495923 33496068 + 2 NA intron (NM_001243476, intron 4 of 17) intron (NM_001243476, intron 4 of 17) -160729 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 236-55 chr10 107354482 107354638 + 2 NA Intergenic L1M3|LINE|L1 -189854 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 267-381 chr6 133289836 133289978 + 2 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 48408 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 356-388 chr5 26823586 26823847 + 2 NA Intergenic Intergenic 214870 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 253-122 chr13 94247495 94247702 + 2 NA intron (NM_005708, intron 4 of 8) L1MA9|LINE|L1 -59607 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 281-171 chr18 9285455 9285643 + 2 NA 3' UTR (NM_015208, exon 13 of 13) 3' UTR (NM_015208, exon 13 of 13) -49224 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 473-215 chr5 45004200 45004578 + 2 NA Intergenic Intergenic 195442 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 522-256 chr8 120360999 120361464 + 2 NA intron (NM_021110, intron 45 of 47) LTR33A|LTR|ERVL 83919 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 249-408 chr8 57779448 57779672 + 2 NA Intergenic Intergenic 33411 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 268-107 chr14 20743885 20744030 + 2 NA Intergenic Intergenic -1930 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 342-465 chr6 110466626 110466958 + 2 NA intron (NM_033125, intron 1 of 7) L1PA17|LINE|L1 9821 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 518-99 chr16 5819048 5819503 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 186808 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 393-136 chr18 393298 393582 + 2 NA intron (NM_130386, intron 2 of 9) L4_A_Mam|LINE|RTE-X 107261 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 456-183 chr21 15937488 15937860 + 2 NA Intergenic L1ME1|LINE|L1 -132814 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 598-45 chr14 89269048 89269407 + 2 NA intron (NM_001085471, intron 4 of 6) intron (NM_001085471, intron 4 of 6) 148006 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 260-11 chr1 99188232 99188451 + 2 NA Intergenic L1ME3|LINE|L1 -75951 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 511-65 chr14 61901393 61901740 + 2 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -26129 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 476-216 chr5 40341975 40342326 + 2 NA Intergenic L1PB1|LINE|L1 289859 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 266-133 chr15 88356594 88356824 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -99970 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 314-357 chr3 1710319 1710526 + 2 NA Intergenic Intergenic -388381 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 177-87 chr2 220082892 220083042 + 2 NA Intergenic Intergenic -176402 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 364-417 chr7 85233226 85233458 + 2 NA Intergenic MamGyp-int|LTR|Gypsy -111411 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 363-138 chr14 58767069 58767383 + 2 NA Intergenic Intergenic -61062 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 237-227 chr3 6314304 6314500 + 2 NA Intergenic Intergenic 491047 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 165-21 chr11 124448823 124448918 + 2 NA Intergenic L1MA5A|LINE|L1 -7785 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 519-202 chr6 142479640 142479982 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 158025 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 351-218 chr2 65668316 65668628 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -235873 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 503-280 chr8 97480928 97481357 + 2 NA Intergenic L1PA16|LINE|L1 -34645 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 221-223 chr4 91418019 91418209 + 2 NA intron (NM_001145065, intron 10 of 10) L1MA9|LINE|L1 859188 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 415-219 chr5 92391020 92391381 + 2 NA Intergenic Intergenic -1007883 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 362-154 chr14 72626589 72626943 + 2 NA intron (NM_001280542, intron 9 of 10) L1MC4a|LINE|L1 109946 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 329-462 chr5 99821889 99822083 + 2 NA Intergenic Intergenic 287996 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 228-115 chr15 86473184 86473369 + 2 NA intron (NM_152336, intron 18 of 24) MIRc|SINE|MIR -156308 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 242-134 chr17 3445403 3445548 + 2 NA intron (NM_001321336, intron 7 of 8) MLT1E3|LTR|ERVL-MaLR -11634 NM_003554 8388 Hs.533931 NM_003554 ENSG00000127780 OR1E2 OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529 olfactory receptor family 1 subfamily E member 2 protein-coding 218-123 chr17 52202049 52202211 + 2 NA Intergenic Intergenic -42113 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 325-398 chr4 76297561 76297836 + 2 NA intron (NM_001242939, intron 6 of 6) MLT1F1|LTR|ERVL-MaLR -8328 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 295-2 chr1 12744201 12744458 + 2 NA Intergenic LTR51|LTR|ERV1 -1871 NM_152290 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 179-90 chr5 2452199 2452374 + 2 NA Intergenic L1M5|LINE|L1 -140085 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 719-51 chr3 87746492 87747086 + 2 NA Intergenic Intergenic -45917 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 240-214 chr2 59670321 59670466 + 2 NA Intergenic Intergenic 452685 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 310-484 chr7 77266124 77266363 + 2 NA intron (NM_020879, intron 9 of 18) intron (NM_020879, intron 9 of 18) -66424 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 316-326 chr20 57051440 57051668 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -162142 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 325-470 chr6 21030245 21030438 + 2 NA intron (NM_017774, intron 11 of 15) L1PA8|LINE|L1 481551 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 328-468 chr5 120779697 120779999 + 2 NA Intergenic Intergenic 248384 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 362-117 chr12 57554107 57554440 + 2 NA intron (NM_001354705, intron 1 of 25) MIR|SINE|MIR 4229 NM_001354705 3798 Hs.151219 NM_004984 ENSG00000155980 KIF5A ALS25|D12S1889|MY050|NEIMY|NKHC|SPG10 kinesin family member 5A protein-coding 373-116 chr14 70975759 70976127 + 2 NA intron (NM_014982, intron 5 of 35) intron (NM_014982, intron 5 of 35) 68484 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 247-368 chr6 143120282 143120430 + 2 NA intron (NM_001366344, intron 2 of 6) THE1B|LTR|ERVL-MaLR -5783 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 164-94 chr5 10002010 10002143 + 2 NA Intergenic L1PA14|LINE|L1 -98252 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 235-194 chr2 212552660 212552828 + 2 NA Intergenic Intergenic -13942 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 385-184 chr2 144594418 144594631 + 2 NA Intergenic Intergenic -70080 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 218-219 chr3 100840496 100840651 + 2 NA intron (NM_001349329, intron 19 of 64) intron (NM_001349329, intron 19 of 64) 131031 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 577-126 chr4 299229 299614 + 2 NA intron (NM_001137608, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat 6053 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 182-108 chr3 74677566 74677695 + 2 NA Intergenic Intergenic -156490 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 223-271 chr5 35338644 35338793 + 2 NA Intergenic Intergenic -108231 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 849-20 chr2 41454307 41454914 + 2 NA Intergenic Intergenic -422945 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 309-281 chr2 178587885 178588065 + 2 NA exon (NM_133432, exon 134 of 192) exon (NM_133432, exon 134 of 192) 64784 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 377-214 chr2 123615114 123615366 + 2 NA Intergenic L1MA2|LINE|L1 409934 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 268-343 chr6 63039266 63039528 + 2 NA Intergenic MamRep605|LTR?|LTR? 280580 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 357-17 chr1 163384632 163384893 + 2 NA Intergenic L1M5|LINE|L1 38429 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 318-181 chr15 59602171 59602432 + 2 NA Intergenic Intergenic -9482 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 209-349 chr9 126043336 126043526 + 2 NA Intergenic L1MD|LINE|L1 232484 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 121-20 chr18 43980186 43980277 + 2 NA Intergenic Intergenic 551466 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 232-378 chr8 92634384 92634559 + 2 NA intron (NR_125827, intron 2 of 4) intron (NR_125827, intron 2 of 4) 21023 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 239-231 chr3 22042294 22042514 + 2 NA Intergenic Intergenic 85265 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 930-17 chr2 134514802 134515515 + 2 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 203842 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 429-276 chr7 68853821 68854099 + 2 NA Intergenic AluJb|SINE|Alu 743664 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 453-120 chr2 110707554 110707898 + 2 NA Intergenic L1MB7|LINE|L1 -24847 NM_001142807 55289 Hs.253320 NM_018308 ENSG00000153093 ACOXL - acyl-CoA oxidase like protein-coding 425-87 chr14 70212810 70213073 + 2 NA intron (NR_135825, intron 2 of 3) intron (NR_135825, intron 2 of 3) -23871 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 299-441 chr8 37657840 37658050 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -37837 NM_025069 80139 Hs.288042 NM_025069 ENSG00000183779 ZNF703 NLZ1|ZEPPO1|ZNF503L|ZPO1 zinc finger protein 703 protein-coding 249-20 chr1 158214124 158214336 + 2 NA Intergenic MER52D|LTR|ERV1 -34106 NM_001320652 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 382-71 chr12 369668 369956 + 2 NA intron (NM_001042603, intron 3 of 27) intron (NM_001042603, intron 3 of 27) 19508 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 310-157 chr15 59975939 59976168 + 2 NA Intergenic Intergenic -28258 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 370-461 chr8 136992515 136992800 + 2 NA Intergenic L1MA9|LINE|L1 420931 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 348-245 chr2 180414264 180414473 + 2 NA Intergenic Intergenic -277736 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 137-95 chr8 140875934 140876019 + 2 NA intron (NM_001352737, intron 3 of 32) intron (NM_001352737, intron 3 of 32) 125028 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 453-150 chr22 34933662 34933962 + 2 NA intron (NR_138042, intron 1 of 4) AluSx|SINE|Alu 64104 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 227-225 chr3 62511439 62511594 + 2 NA intron (NM_183393, intron 16 of 26) MIR|SINE|MIR -137966 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 317-143 chr14 50621729 50621958 + 2 NA exon (NM_001127713, exon 11 of 14) exon (NM_001127713, exon 11 of 14) 46463 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 594-55 chr16 76471691 76471988 + 2 NA intron (NR_136213, intron 10 of 23) intron (NR_136213, intron 10 of 23) 161987 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 300-176 chr19 43874893 43875070 + 2 NA intron (NM_001033719, intron 1 of 1) intron (NM_001033719, intron 1 of 1) 5155 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 379-73 chr12 66418441 66418674 + 2 NA intron (NM_001366722, intron 15 of 24) L1MA2|LINE|L1 116012 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 423-324 chrX 96245535 96245897 + 2 NA Intergenic Intergenic 92186 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 807-12 chr13 22590983 22591549 + 2 NA Intergenic Intergenic 306915 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 249-75 chr11 43083343 43083523 + 2 NA Intergenic Intergenic 185936 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 346-223 chr2 2858016 2858217 + 2 NA Intergenic L1ME4a|LINE|L1 267910 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 727-38 chr16 79905234 79905745 + 2 NA Intergenic Intergenic 110240 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 243-25 chr1 216083002 216083184 + 2 NA intron (NR_125992, intron 2 of 2) L1ME3F|LINE|L1 10628 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 364-426 chr7 132631225 132631464 + 2 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) 17344 NM_181775 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 267-237 chr21 21133359 21133529 + 2 NA intron (NM_001352595, intron 1 of 14) MLT1I|LTR|ERVL-MaLR -13718 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 276-9 chr1 61000366 61000547 + 2 NA Intergenic L2c|LINE|L2 -29680 NR_110617 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 274-136 chr14 95729187 95729435 + 2 NA intron (NR_148060, intron 2 of 2) LTR5B|LTR|ERVK 13828 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 491-194 chr4 158863351 158863735 + 2 NA intron (NM_001346043, intron 11 of 15) intron (NM_001346043, intron 11 of 15) 57704 NM_001323916 57600 Hs.652441 NM_020840 ENSG00000052795 FNIP2 FNIPL|MAPO1 folliculin interacting protein 2 protein-coding 222-297 chr5 77635573 77635702 + 2 NA intron (NM_032109, intron 2 of 2) intron (NM_032109, intron 2 of 2) 3060 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 272-168 chr19 31849303 31849541 + 2 NA Intergenic L1MC3|LINE|L1 -176440 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 314-470 chr5 101928418 101928635 + 2 NA Intergenic Intergenic 367758 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 249-231 chr2 220766194 220766437 + 2 NA Intergenic Intergenic 805989 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 180-174 chr8 102029310 102029451 + 2 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 44948 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 222-107 chr14 30826339 30826498 + 2 NA Intergenic AluJr|SINE|Alu -48117 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 485-24 chr10 16259949 16260299 + 2 NA Intergenic L2b|LINE|L2 -176819 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 288-407 chr7 49976347 49976561 + 2 NA intron (NM_001159878, intron 7 of 7) L1MEg|LINE|L1 116792 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 311-25 chr1 160199504 160199663 + 2 NA intron (NM_001231, intron 9 of 10) MIRc|SINE|MIR -5801 NM_003768 8682 Hs.517216 NM_003768 ENSG00000162734 PEA15 HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED|PED-PEA15|PED/PEA15 proliferation and apoptosis adaptor protein 15 protein-coding 241-373 chr7 61734045 61734206 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1569931 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 247-419 chr8 131026415 131026555 + 2 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 14424 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 414-306 chr7 49735804 49736203 + 2 NA Intergenic Intergenic -37635 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 353-478 chr7 25370027 25370277 + 2 NA Intergenic Intergenic -141666 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 370-91 chr11 80200806 80201109 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 561846 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 307-169 chr16 24023745 24023951 + 2 NA intron (NM_002738, intron 3 of 16) MamRep38|DNA|hAT -179268 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 376-375 chr7 62733824 62734036 + 2 NA Intergenic ALR/Alpha|Satellite|centr 570126 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 632-92 chr5 16256307 16256699 + 2 NA Intergenic L2c|LINE|L2 76262 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 373-136 chr15 98730397 98730762 + 2 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) -53847 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 265-36 chr10 61874548 61874774 + 2 NA Intergenic Intergenic -27038 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 192-193 chr7 55098671 55098856 + 2 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) -11076 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 428-179 chr3 71581018 71581311 + 2 NA intron (NR_146142, intron 2 of 19) intron (NR_146142, intron 2 of 19) 2564 NM_001349340 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 471-191 chr4 60799097 60799476 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -123333 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 520-258 chr6 91731455 91731910 + 2 NA Intergenic Intergenic -41254 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 343-353 chr3 114871716 114871956 + 2 NA intron (NM_001348805, intron 4 of 10) intron (NM_001348805, intron 4 of 10) -1197 NR_126422 104413890 Hs.612732 NR_126422 ENSG00000239946 ZBTB20-AS3 - ZBTB20 antisense RNA 3 ncRNA 291-281 chr3 22110917 22111098 + 2 NA Intergenic Intergenic 153868 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 273-351 chr5 41955068 41955268 + 2 NA Intergenic Intergenic 29887 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 587-110 chr3 164078990 164079416 + 2 NA Intergenic Intergenic 92353 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 981-14 chr2 183267300 183268256 + 2 NA Intergenic Intergenic 143335 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 352-211 chr19 51962105 51962394 + 2 NA intron (NR_103847, intron 1 of 2) intron (NR_103847, intron 1 of 2) 13115 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 296-93 chr12 18076929 18077148 + 2 NA Intergenic Intergenic 13155 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 383-364 chr7 93500866 93501085 + 2 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) -16956 NR_030164 574442 NR_030164 ENSG00000207656 MIR489 MIRN489|hsa-mir-489|mir-489 microRNA 489 ncRNA 306-237 chr2 68372863 68373138 + 2 NA intron (NM_002664, intron 1 of 8) MIR3|SINE|MIR 7718 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 305-171 chr15 67762927 67763135 + 2 NA intron (NM_001206804, intron 19 of 21) LFSINE_Vert|SINE|tRNA -62478 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 442-241 chr5 167023014 167023310 + 2 NA Intergenic Intergenic -50080 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 327-336 chr3 97694735 97695012 + 2 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -69648 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 368-341 chr4 148646225 148646578 + 2 NA Intergenic Intergenic -201703 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 249-415 chr8 82387484 82387705 + 2 NA Intergenic Intergenic -524510 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 437-263 chr8 18448627 18448957 + 2 NA Intergenic MER4A1|LTR|ERV1 57510 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 249-63 chr10 118227960 118228122 + 2 NA Intergenic L1MD1|LINE|L1 114283 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 395-241 chr3 193247228 193247591 + 2 NA intron (NM_020386, intron 1 of 3) MER61D|LTR|ERV1 5630 NR_026877 84789 Hs.676481 NM_032703 MGC2889 - uncharacterized protein MGC2889 ncRNA 429-105 chr16 12611780 12612062 + 2 NA Intergenic MER41C|LTR|ERV1 -108400 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 580-73 chr19 44348771 44349322 + 2 NA intron (NM_001348281, intron 1 of 4) Cheshire|DNA|hAT-Charlie 7634 NM_001348285 7771 Hs.48589 NM_013380 ENSG00000062370 ZNF112 ZFP112|ZNF228 zinc finger protein 112 protein-coding 202-53 chr12 72401150 72401342 + 2 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -127737 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 506-108 chr16 80838893 80839241 + 2 NA intron (NR_131947, intron 2 of 3) L1MA7|LINE|L1 -34469 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 436-199 chr4 13864877 13865281 + 2 NA intron (NR_121681, intron 3 of 3) L1MC1|LINE|L1 209900 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 136-15 chr11 78775768 78775881 + 2 NA intron (NM_001098816, intron 17 of 33) intron (NM_001098816, intron 17 of 33) -200960 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 291-160 chr16 63199261 63199512 + 2 NA Intergenic MER8|DNA|TcMar-Tigger -1162948 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 183-57 chr16 51042289 51042395 + 2 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 24584 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 329-158 chr14 49163289 49163580 + 2 NA Intergenic Intergenic 422946 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 262-250 chr20 41915333 41915581 + 2 NA Intergenic L1MB2|LINE|L1 -297080 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 451-199 chr6 113282417 113282739 + 2 NA Intergenic L1MEc|LINE|L1 150869 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 313-529 chr8 89212746 89212939 + 2 NA Intergenic MLT2B2|LTR|ERVL 544869 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 308-351 chr4 104320556 104320744 + 2 NA Intergenic MIR|SINE|MIR -170315 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 312-192 chr17 71887183 71887475 + 2 NA Intergenic AluSg4|SINE|Alu 138650 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 297-218 chr2 101130188 101130428 + 2 NA intron (NM_001102426, intron 1 of 19) intron (NM_001102426, intron 1 of 19) 21139 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 147-83 chr8 80646684 80646808 + 2 NA intron (NM_001033723, intron 7 of 8) intron (NM_001033723, intron 7 of 8) 160520 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 488-45 chr11 38544786 38545121 + 2 NA Intergenic LTR106_Mam|LTR|LTR 101403 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 193-106 chr2 71066766 71066939 + 2 NA Intergenic MER33|DNA|hAT-Charlie -1444 NM_001330426 55577 Hs.7036 NM_017567 ENSG00000124357 NAGK GNK|HSA242910 N-acetylglucosamine kinase protein-coding 496-254 chr7 21661548 21661811 + 2 NA intron (NM_001277115, intron 30 of 81) MIR|SINE|MIR 118640 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 349-412 chr5 44937684 44937874 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 128832 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 252-85 chr12 13116746 13116921 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -13166 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 376-5 chr1 65847004 65847298 + 2 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) 54256 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 204-235 chr5 101745142 101745339 + 2 NA Intergenic Intergenic 551044 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 522-5 chr1 83042151 83042624 + 2 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -56179 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 292-145 chr14 87656525 87656748 + 2 NA Intergenic Intergenic -1342 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 187-148 chr6 44784279 44784440 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -232478 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 367-360 chr5 68761311 68761526 + 2 NA Intergenic Intergenic 268509 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 431-326 chrX 4347163 4347469 + 2 NA Intergenic Intergenic 286256 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 260-35 chr10 6977546 6977727 + 2 NA Intergenic Intergenic 198038 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 893-39 chr6 114784387 114785086 + 2 NA Intergenic Intergenic -721859 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 366-20 chr1 114858740 114858969 + 2 NA intron (NM_001282542, intron 6 of 30) intron (NM_001282542, intron 6 of 30) 3991 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 169-7 chr1 235859787 235859921 + 2 NA intron (NR_102436, intron 1 of 3) MIRc|SINE|MIR -6794 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 317-204 chr19 12020107 12020270 + 2 NA intron (NM_001080411, intron 1 of 3) AluSz|SINE|Alu 15553 NM_001308346 163059 Hs.667776 NM_152602 ENSG00000197647 ZNF433 - zinc finger protein 433 protein-coding 306-191 chr17 34700401 34700574 + 2 NA Intergenic MIRc|SINE|MIR 119738 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 252-72 chr11 81704006 81704143 + 2 NA Intergenic L1MCb|LINE|L1 186762 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 558-111 chr2 236416476 236416898 + 2 NA intron (NM_001270584, intron 7 of 17) intron (NM_001270584, intron 7 of 17) 87010 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 390-354 chr7 62858088 62858453 + 2 NA Intergenic ALR/Alpha|Satellite|centr 445786 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 374-223 chr20 41949234 41949504 + 2 NA Intergenic L1M5|LINE|L1 -330992 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 269-334 chr6 9205420 9205617 + 2 NA Intergenic L1M4|LINE|L1 553309 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 329-424 chr4 123569031 123569216 + 2 NA Intergenic L1MC5|LINE|L1 -80868 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 446-105 chr14 87419672 87419976 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 235470 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 314-587 chr8 126735824 126736059 + 2 NA Intergenic Intergenic -177463 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 370-265 chr20 6859855 6860056 + 2 NA Intergenic Intergenic 92269 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 532-244 chr7 40562114 40562494 + 2 NA intron (NM_001193312, intron 11 of 12) AluY|SINE|Alu 417635 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 343-282 chr2 176946654 176946852 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 265658 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 170-34 chr12 20127674 20127817 + 2 NA intron (NR_146523, intron 1 of 3) MLT1J|LTR|ERVL-MaLR 156 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 294-54 chr11 18830414 18830687 + 2 NA Intergenic L1PREC2|LINE|L1 -37829 NM_001278236 84867 Hs.79092 NM_006906 ENSG00000110786 PTPN5 PTPSTEP|STEP|STEP61 protein tyrosine phosphatase non-receptor type 5 protein-coding 586-60 chr16 83305628 83306025 + 2 NA intron (NM_001220489, intron 4 of 12) MIRb|SINE|MIR -202520 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 237-111 chr14 71443254 71443424 + 2 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 4400 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 553-191 chr5 51751250 51751611 + 2 NA Intergenic L1MA10|LINE|L1 -256601 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 244-48 chr11 40872043 40872204 + 2 NA intron (NM_020929, intron 1 of 4) MER54B|LTR|ERVL -578993 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 353-275 chr20 6149955 6150172 + 2 NA Intergenic Intergenic -26519 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 231-283 chr5 53511296 53511450 + 2 NA Intergenic L1M1|LINE|L1 30744 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 470-114 chr2 5501228 5501561 + 2 NA Intergenic Intergenic 189724 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 311-212 chr18 22169870 22170086 + 2 NA intron (NM_005257, intron 1 of 6) CpG-12421 541 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 184-67 chr15 91170538 91170704 + 2 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 68825 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 312-20 chr1 152055659 152055945 + 2 NA Intergenic Intergenic -18798 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 656-103 chr6 22025943 22026419 + 2 NA intron (NR_015410, intron 7 of 11) intron (NR_015410, intron 7 of 11) 121012 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 251-43 chr10 113702600 113702785 + 2 NA intron (NM_001227, intron 2 of 6) Tigger1|DNA|TcMar-Tigger -6653 NM_001267058 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 487-194 chr3 151540170 151540581 + 2 NA Intergenic L1ME3A|LINE|L1 25620 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 197-22 chr10 20289941 20290117 + 2 NA TTS (NM_001282736) TTS (NM_001282736) -261941 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 308-454 chr7 23593055 23593240 + 2 NA Intergenic L1ME3B|LINE|L1 -4235 NM_138771 90693 Hs.232296 NM_138771 ENSG00000169193 CCDC126 - coiled-coil domain containing 126 protein-coding 438-255 chr7 37277373 37277746 + 2 NA intron (NM_001206480, intron 4 of 21) intron (NM_001206480, intron 4 of 21) 76109 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 269-317 chr5 63813366 63813608 + 2 NA Intergenic Intergenic 148805 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 362-309 chr4 73300375 73300567 + 2 NA Intergenic L1MA4|LINE|L1 -41673 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 260-434 chr8 85138657 85138879 + 2 NA intron (NM_033402, intron 17 of 18) AluSq2|SINE|Alu 31530 NM_001349638 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 611-114 chr5 37923948 37924511 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -24262 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 290-268 chr3 4796729 4796981 + 2 NA intron (NM_001168272, intron 52 of 60) intron (NM_001168272, intron 52 of 60) -45265 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 349-300 chr21 22466783 22467029 + 2 NA Intergenic Intergenic 368289 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 261-409 chr9 38746085 38746264 + 2 NA Intergenic Intergenic 125086 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 327-132 chr12 127439492 127439656 + 2 NA Intergenic Intergenic -99502 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 222-141 chr18 531049 531226 + 2 NA Intergenic Intergenic -15843 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 308-470 chr7 85501814 85501986 + 2 NA Intergenic L1MA2|LINE|L1 80778 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 829-24 chr3 46195742 46196335 + 2 NA Intergenic L1MEf|LINE|L1 12275 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 344-427 chr6 90908535 90908785 + 2 NA Intergenic Intergenic -321588 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 403-23 chr10 10302663 10303042 + 2 NA Intergenic MIRc|SINE|MIR 159497 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 498-282 chr8 126728198 126728582 + 2 NA Intergenic Intergenic -169912 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 258-377 chr7 116518341 116518560 + 2 NA Intergenic Intergenic -6559 NM_001172895 857 Hs.74034 NM_001753 ENSG00000105974 CAV1 BSCL3|CGL3|LCCNS|MSTP085|PPH3|VIP21 caveolin 1 protein-coding 239-261 chr3 160510274 160510437 + 2 NA intron (NM_002268, intron 13 of 16) L1ME4c|LINE|L1 4881 NR_003001 677767 Hs.675953 NR_003001 ENSG00000238741 SCARNA7 U90 small Cajal body-specific RNA 7 ncRNA 306-398 chr5 90431884 90432076 + 2 NA Intergenic L2|LINE|L2 21980 NR_105024 731157 Hs.551062 NR_105024 ENSG00000255647 LOC731157 - uncharacterized LOC731157 ncRNA 398-137 chr17 59842991 59843302 + 2 NA TTS (NM_001329399) TTS (NM_001329399) 1880 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 254-70 chr12 14509876 14510075 + 2 NA intron (NM_024829, intron 8 of 10) MER46C|DNA|TcMar-Tigger -57757 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 428-70 chr14 72091889 72092239 + 2 NA intron (NM_001370288, intron 2 of 16) AluSz|SINE|Alu 158537 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 218-366 chrX 94663129 94663293 + 2 NA Intergenic Intergenic 400015 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 375-209 chr2 71918940 71919212 + 2 NA Intergenic L1ME1|LINE|L1 228786 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 777 chr1 14026693 14027379 + 2 NA Intergenic L2b|LINE|L2 277621 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 452-24 chr10 17677862 17678163 + 2 NA intron (NM_001324284, intron 3 of 14) L1MB7|LINE|L1 33861 NM_001324284 8027 Hs.335391 NM_003473 ENSG00000136738 STAM STAM-1|STAM1 signal transducing adaptor molecule protein-coding 283-97 chr12 30357890 30358105 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 319247 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 332-287 chr2 236563464 236563637 + 2 NA Intergenic L2a|LINE|L2 -6275 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 417-15 chr1 118364388 118364713 + 2 NA Intergenic Intergenic -179322 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 266-298 chr4 96974849 96975012 + 2 NA Intergenic Intergenic -391996 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 264-321 chr5 50586255 50586408 + 2 NA Intergenic Intergenic -79600 NM_001178055 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 481-128 chr19 39920689 39921002 + 2 NA intron (NM_003890, intron 3 of 28) L2b|LINE|L2 13781 NM_003890 8857 Hs.111732 NM_003890 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 368-113 chr12 78386340 78386624 + 2 NA Intergenic Intergenic -26736 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 510-54 chr11 113708056 113708489 + 2 NA Intergenic L1M4|LINE|L1 -1899 NR_110046 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 216-11 chr1 86463398 86463586 + 2 NA Intergenic AluJb|SINE|Alu -5435 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 256-267 chr3 104890001 104890226 + 2 NA Intergenic Intergenic -476600 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 551-129 chr4 22569760 22570191 + 2 NA Intergenic L1M2|LINE|L1 -53909 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 298-255 chr20 40055320 40055537 + 2 NA Intergenic Intergenic 50967 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 290-70 chr11 21167909 21168092 + 2 NA intron (NM_201551, intron 13 of 18) L2a|LINE|L2 498414 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 368-307 chr3 148012536 148012892 + 2 NA Intergenic Intergenic -65445 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 182-11 chr1 159461503 159461645 + 2 NA Intergenic L1MDa|LINE|L1 21852 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 268-249 chr3 112417032 112417280 + 2 NA Intergenic Intergenic 82316 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 560-114 chr3 86607726 86608252 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 126046 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 268-409 chr8 118650088 118650313 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -28237 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 631-68 chr2 75293720 75294344 + 2 NA Intergenic Intergenic -94512 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 340-259 chr2 77475617 77475915 + 2 NA intron (NR_146416, intron 1 of 1) L1ME3G|LINE|L1 46610 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 452-238 chr6 133191619 133191905 + 2 NA Intergenic Intergenic -49595 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 303-333 chr4 165892818 165893091 + 2 NA intron (NM_001204760, intron 1 of 9) intron (NM_001204760, intron 1 of 9) 19717 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 247-286 chr4 30364722 30364850 + 2 NA Intergenic Intergenic -355583 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 300-257 chr21 45551380 45551652 + 2 NA intron (NM_001352511, intron 1 of 5) L1MD|LINE|L1 -9076 NM_001352510 6573 Hs.84190 NM_003056 ENSG00000173638 SLC19A1 CHMD|FOLT|IFC-1|IFC1|REFC|RFC|RFC1 solute carrier family 19 member 1 protein-coding 341-419 chr5 11824956 11825141 + 2 NA intron (NM_001288717, intron 1 of 20) L1ME1|LINE|L1 79398 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 919-18 chr4 88608226 88608938 + 2 NA intron (NM_001318505, intron 3 of 8) Charlie23a|DNA|hAT-Charlie 16102 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 311-13 chr1 78327274 78327496 + 2 NA intron (NR_027310, intron 3 of 5) (AT)n|Simple_repeat|Simple_repeat 97786 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 169-70 chr21 28587513 28587658 + 2 NA Intergenic Intergenic 48267 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 116-12 chr15 23847439 23847523 + 2 NA Intergenic L1ME1|LINE|L1 -127666 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 546-22 chr10 51469949 51470418 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 170610 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 235-122 chr16 48476446 48476652 + 2 NA Intergenic L1MCa|LINE|L1 -91136 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 290-14 chr1 86154547 86154729 + 2 NA intron (NM_152890, intron 1 of 59) intron (NM_152890, intron 1 of 59) 1833 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 458-257 chr8 87568925 87569202 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 304952 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 355-185 chr16 73491446 73491653 + 2 NA Intergenic Intergenic 104744 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 423-287 chr8 28227382 28227789 + 2 NA Intergenic Intergenic -89683 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 235-226 chr3 34802188 34802410 + 2 NA Intergenic MER57A-int|LTR|ERV1 591724 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 320-71 chr10 114892143 114892303 + 2 NA intron (NM_001135051, intron 16 of 16) L1ME4a|LINE|L1 -45972 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 439-302 chr9 25562803 25563191 + 2 NA Intergenic L1MA10|LINE|L1 115861 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 311-364 chr4 13096088 13096332 + 2 NA Intergenic Intergenic 388130 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 199-71 chr16 60915034 60915214 + 2 NA Intergenic Intergenic 140642 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 547-222 chr7 85474243 85474601 + 2 NA intron (NR_134240, intron 2 of 3) intron (NR_134240, intron 2 of 3) 53300 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 311-186 chr16 82507722 82507908 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -119154 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 209-117 chr16 61371326 61371498 + 2 NA Intergenic Intergenic -315646 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 310-526 chr8 111972734 111972944 + 2 NA Intergenic Intergenic 596200 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 250-276 chr3 69950474 69950636 + 2 NA intron (NM_198178, intron 5 of 8) (AT)n|Simple_repeat|Simple_repeat 13955 NM_000248 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 439-259 chr7 12833277 12833568 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 145789 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 288-124 chr14 86274795 86274998 + 2 NA Intergenic Intergenic 340218 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 325-220 chr17 54551858 54552062 + 2 NA Intergenic L1MA5|LINE|L1 -348731 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 281-415 chr7 53555633 53555893 + 2 NA Intergenic Intergenic 256168 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 318-478 chr6 62431961 62432141 + 2 NA Intergenic L1PA16|LINE|L1 -145824 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 230-37 chr10 39531113 39531318 + 2 NA Intergenic ALR/Alpha|Satellite|centr 834619 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 196-213 chr5 118251368 118251497 + 2 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -31142 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 237-392 chr8 126362112 126362309 + 2 NA Intergenic L1MC5|LINE|L1 36715 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 201-161 chr3 124970263 124970445 + 2 NA 3' UTR (NM_020733, exon 17 of 17) 3' UTR (NM_020733, exon 17 of 17) -35603 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 223-75 chr13 78583115 78583280 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -12925 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 343-345 chr3 87748540 87748803 + 2 NA Intergenic L2a|LINE|L2 -44035 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 396-167 chr2 75008065 75008273 + 2 NA Intergenic Intergenic 49526 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 314-190 chr15 62731036 62731214 + 2 NA intron (NM_015059, intron 25 of 55) L1ME3A|LINE|L1 83814 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 427-264 chr8 118456742 118457109 + 2 NA intron (NM_001101676, intron 2 of 4) MIRb|SINE|MIR -164076 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 263-462 chrX 73334015 73334205 + 2 NA Intergenic L1PB1|LINE|L1 -113144 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 272-83 chr11 134593023 134593209 + 2 NA Intergenic L1MB7|LINE|L1 -142829 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 173-87 chr22 39813350 39813501 + 2 NA intron (NM_152512, intron 5 of 6) L1ME3E|LINE|L1 80335 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 433-167 chr3 214421 214818 + 2 NA intron (NR_045572, intron 1 of 2) intron (NR_045572, intron 1 of 2) 16730 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 509-68 chr13 72108284 72108645 + 2 NA Intergenic Intergenic -241260 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 367-325 chr4 52124041 52124376 + 2 NA Intergenic L1MEc|LINE|L1 72904 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 469-225 chr5 115542634 115542891 + 2 NA intron (NM_020177, intron 2 of 2) intron (NM_020177, intron 2 of 2) 2013 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 331-547 chr8 142856067 142856361 + 2 NA Intergenic L1M4|LINE|L1 21413 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 289-17 chr1 117419217 117419409 + 2 NA intron (NM_006699, intron 4 of 12) L2a|LINE|L2 51864 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 251-31 chr10 43849317 43849499 + 2 NA intron (NR_033923, intron 2 of 2) intron (NR_033923, intron 2 of 2) 4102 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 364-377 chr6 40570043 40570281 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 17202 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 356-257 chr2 116832178 116832499 + 2 NA Intergenic L1MB8|LINE|L1 -982353 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 355-66 chr10 97936784 97936997 + 2 NA intron (NM_001206528, intron 2 of 14) MIRc|SINE|MIR -60993 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 360-343 chr5 7657937 7658214 + 2 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 193058 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 213-270 chr8 11334829 11335009 + 2 NA Intergenic L1M4c|LINE|L1 3933 NM_054028 83650 Hs.458397 NM_054028 ENSG00000177710 SLC35G5 AMAC|AMAC1L2 solute carrier family 35 member G5 protein-coding 351-512 chr9 29961133 29961477 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie 447149 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 231-318 chr6 160726077 160726273 + 2 NA intron (NM_000301, intron 10 of 18) L1ME2|LINE|L1 23982 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 338-394 chr4 127304979 127305262 + 2 NA Intergenic Intergenic -327837 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 604-135 chr5 140771652 140772031 + 2 NA Intergenic L1MD1|LINE|L1 -14295 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 369-57 chr11 54598337 54598603 + 2 NA Intergenic L1P1|LINE|L1 5528 NM_001004703 119749 Hs.553564 NM_001004703 ENSG00000185926 OR4C46 - olfactory receptor family 4 subfamily C member 46 protein-coding 352-322 chr3 78365763 78365983 + 2 NA Intergenic MLT2B4|LTR|ERVL -316910 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 503-66 chr12 37798165 37798552 + 2 NA Intergenic ALR/Alpha|Satellite|centr -518416 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 472-257 chr5 123197436 123197744 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -107274 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 393-128 chr17 60237160 60237450 + 2 NA intron (NM_032582, intron 11 of 33) AluJb|SINE|Alu -5660 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 268-341 chr6 60660907 60661115 + 2 NA Intergenic L1P2|LINE|L1 -913119 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 321-579 chr8 131834049 131834252 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -69943 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 319-294 chr20 54255017 54255265 + 2 NA Intergenic L1ME1|LINE|L1 47054 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 245-144 chr15 79958012 79958190 + 2 NA Intergenic L1ME1|LINE|L1 13095 NM_004049 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 239-374 chr7 50239262 50239413 + 2 NA Intergenic Intergenic -64727 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 478-235 chr5 40919972 40920316 + 2 NA intron (NM_000587, intron 1 of 17) L1M1|LINE|L1 10647 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 369-372 chr6 167726645 167727010 + 2 NA Intergenic Intergenic -43040 NR_117092 441178 Hs.628956 NM_001025489 ENSG00000203688 LINC02487 - long intergenic non-protein coding RNA 2487 ncRNA 218-278 chr5 141368751 141368950 + 2 NA intron (NM_018918, intron 1 of 3) intron (NM_018918, intron 1 of 3) -1392 NM_032097 56102 Hs.368160 NM_018924 ENSG00000262209 PCDHGB3 PCDH-GAMMA-B3 protocadherin gamma subfamily B, 3 protein-coding 218-50 chr11 50622151 50622321 + 2 NA Intergenic ALR/Alpha|Satellite|centr 213089 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 356-294 chr20 56144928 56145270 + 2 NA Intergenic Intergenic -103633 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 326-584 chrX 62787698 62787890 + 2 NA Intergenic ALR/Alpha|Satellite|centr 563538 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 268-270 chr4 33491473 33491632 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 548341 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 392-14 chr1 182914503 182914860 + 2 NA intron (NM_030933, intron 6 of 9) L1MB5|LINE|L1 38485 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 197-37 chr11 29062058 29062197 + 2 NA Intergenic Intergenic -532286 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 258-382 chr8 50044678 50044848 + 2 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -119368 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 210-131 chr2 81777099 81777209 + 2 NA Intergenic L1MC2|LINE|L1 -310208 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 348-138 chr14 60998564 60998903 + 2 NA intron (NR_033344, intron 3 of 16) LTR1F1|LTR|ERV1 -17043 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 585-87 chr20 9403377 9403748 + 2 NA intron (NM_000933, intron 17 of 35) MER57B2|LTR|ERV1 95762 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 348-491 chr7 39203906 39204214 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) 125074 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 294-385 chr5 111871872 111872079 + 2 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -40533 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 647-85 chr6 40576346 40576885 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 10749 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 392-332 chr8 122255696 122255953 + 2 NA Intergenic MIR|SINE|MIR 312820 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 189-162 chr5 67526355 67526502 + 2 NA Intergenic L1MB7|LINE|L1 120361 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 383-251 chr3 76436915 76437200 + 2 NA Intergenic Intergenic -603042 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 399-10 chr1 152869578 152869882 + 2 NA Intergenic Intergenic -8592 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 438-133 chr2 177797850 177798149 + 2 NA intron (NM_001077197, intron 10 of 20) L2c|LINE|L2 90757 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 313-236 chr2 21370178 21370456 + 2 NA Intergenic Intergenic 246331 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 593-145 chr8 53628217 53628729 + 2 NA Intergenic L1ME3B|LINE|L1 -104508 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 427-138 chr20 62149855 62150172 + 2 NA intron (NM_198935, intron 1 of 10) intron (NM_198935, intron 1 of 10) 6244 NM_001301778 26039 Hs.154429 NM_015558 ENSG00000184402 SS18L1 CREST|LP2261 SS18L1 subunit of BAF chromatin remodeling complex protein-coding 481-76 chr13 62199773 62200046 + 2 NA Intergenic Intergenic -12373 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 225-204 chr3 65070243 65070399 + 2 NA Intergenic Intergenic -382321 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 216-189 chr2 240936921 240937105 + 2 NA intron (NM_001351305, intron 14 of 31) L1ME2|LINE|L1 30438 NR_033841 200772 Hs.647893 NR_033841 ENSG00000233392 LOC200772 - uncharacterized LOC200772 ncRNA 321-608 chr9 118542241 118542496 + 2 NA Intergenic Intergenic -137303 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 255-355 chr6 77150437 77150587 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 313510 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 351-62 chr11 21947344 21947599 + 2 NA Intergenic Intergenic -245614 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 382-293 chr4 44530567 44530836 + 2 NA Intergenic L1PA15|LINE|L1 -81892 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 273-469 chr9 34358209 34358356 + 2 NA Intergenic L1MA7|LINE|L1 18616 NM_020702 57462 Hs.522083 NM_020702 ENSG00000164976 MYORG IBGC7|KIAA1161|NET37 myogenesis regulating glycosidase (putative) protein-coding 336-407 chr4 46631620 46631866 + 2 NA Intergenic L1PA15|LINE|L1 -241615 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 270-446 chrX 93169331 93169570 + 2 NA Intergenic L1MA1|LINE|L1 -344547 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 364-6 chr1 37045279 37045519 + 2 NA Intergenic MIR|SINE|MIR -10884 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 366-21 chr1 154530553 154530854 + 2 NA intron (NM_182499, intron 6 of 12) L1MDa|LINE|L1 -22906 NR_046668 100874097 NR_046668 ENSG00000229780 UBE2Q1-AS1 - UBE2Q1 antisense RNA 1 ncRNA 266-391 chr7 32140208 32140454 + 2 NA intron (NM_001322059, intron 3 of 17) MIRb|SINE|MIR -68895 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 145-18 chr12 2506072 2506149 + 2 NA intron (NM_199460, intron 8 of 49).2 intron (NM_199460, intron 8 of 49).2 166110 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 361-318 chr4 47019112 47019389 + 2 NA Intergenic L2a|LINE|L2 -12317 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 495-179 chr4 73807087 73807519 + 2 NA Intergenic L1PA15|LINE|L1 -29375 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 180-81 chr2 50215664 50215762 + 2 NA intron (NM_001330093, intron 18 of 22) (TAA)n|Simple_repeat|Simple_repeat 132041 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 225-351 chr8 71429808 71429978 + 2 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -67824 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 689-20 chr12 119270831 119271373 + 2 NA Intergenic LTR89|LTR|ERVL? 32278 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 538-132 chr2 222330240 222330640 + 2 NA intron (NR_136642, intron 1 of 3) intron (NR_136642, intron 1 of 3) 9779 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 463-89 chr14 42648671 42649032 + 2 NA Intergenic L1MB3|LINE|L1 1041995 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 180-152 chr6 143129723 143129832 + 2 NA intron (NM_001366358, intron 1 of 5) intron (NM_001366358, intron 1 of 5) 3638 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 274-66 chr11 29731916 29732084 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 113198 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 351-423 chr6 124251701 124251967 + 2 NA intron (NM_001300737, intron 2 of 7) L1ME3D|LINE|L1 -31171 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 416-301 chr6 156813510 156813919 + 2 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -33983 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 328-19 chr1 118357410 118357698 + 2 NA Intergenic L1ME2|LINE|L1 -172326 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 350-499 chr8 4345479 4345756 + 2 NA intron (NM_033225, intron 3 of 69) L1M2|LINE|L1 649297 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 265-283 chr4 121223081 121223308 + 2 NA intron (NM_001244764, intron 1 of 12) intron (NM_001244764, intron 1 of 12) 4289 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 446-233 chr5 30620201 30620564 + 2 NA Intergenic L1MB2|LINE|L1 -573304 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 413-272 chr6 159254846 159255171 + 2 NA intron (NM_032532, intron 17 of 22) L2a|LINE|L2 -85001 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 483-227 chr6 54735399 54735794 + 2 NA Intergenic L1PA14|LINE|L1 -111175 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 368-101 chr12 21826215 21826513 + 2 NA intron (NM_005691, intron 29 of 37) intron (NM_005691, intron 29 of 37) -51658 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 219-39 chr10 129499876 129500018 + 2 NA intron (NM_002412, intron 1 of 4) intron (NM_002412, intron 1 of 4) 32706 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 291-442 chr8 68798723 68798963 + 2 NA intron (NR_146187, intron 12 of 13) intron (NR_146187, intron 12 of 13) 305347 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 246-418 chr8 126053075 126053298 + 2 NA Intergenic L1MEc|LINE|L1 -101989 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 311-164 chr15 91490968 91491162 + 2 NA intron (NR_110106, intron 3 of 3) intron (NR_110106, intron 3 of 3) 27726 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 160-13 chr11 36932885 36933003 + 2 NA Intergenic Intergenic -334665 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 300-303 chr3 194568781 194569058 + 2 NA Intergenic Intergenic -15349 NR_047573 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 353-30 chr1 180376036 180376290 + 2 NA intron (NM_032360, intron 6 of 7) L1MC4a|LINE|L1 62227 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 454-224 chr3 188602128 188602542 + 2 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) -33669 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 374-37 chr10 77330633 77330879 + 2 NA intron (NM_001322838, intron 1 of 29) MIRb|SINE|MIR 20005 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 305-317 chr21 18189165 18189373 + 2 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -55564 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 277-108 chr14 28823418 28823671 + 2 NA Intergenic L1MA9|LINE|L1 -37757 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 205-72 chr12 132981544 132981657 + 2 NA Intergenic L1MB7|LINE|L1 -4767 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 545-255 chr9 89381238 89381740 + 2 NA intron (NM_001371200, intron 15 of 20) intron (NM_001371200, intron 15 of 20) 62638 NM_001282690 79048 Hs.59804 NM_024077 ENSG00000187742 SECISBP2 SBP2 SECIS binding protein 2 protein-coding 298-480 chr8 129657432 129657681 + 2 NA intron (NR_130917, intron 1 of 3) MSTA-int|LTR|ERVL-MaLR 22683 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 391-259 chr4 62067369 62067643 + 2 NA intron (NM_001371343, intron 23 of 23) intron (NM_001371343, intron 23 of 23) 94259 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 175-112 chr4 51923236 51923331 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 79704 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 132-78 chr7 49251378 49251483 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie 326883 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 842-50 chr7 109728534 109729116 + 2 NA Intergenic Intergenic 231388 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 296-11 chr1 107914075 107914258 + 2 NA intron (NM_006113, intron 1 of 26) (TAGA)n|Simple_repeat|Simple_repeat 16943 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 895-17 chr2 25499285 25499860 + 2 NA intron (NM_033147, intron 9 of 19) Charlie15a|DNA|hAT-Charlie 150650 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 118-9 chr11 46532862 46532956 + 2 NA intron (NM_001267782, intron 8 of 19) L1ME4a|LINE|L1 54535 NR_160027 55626 Hs.654644 NM_017749 ENSG00000110497 AMBRA1 DCAF3|WDR94 autophagy and beclin 1 regulator 1 protein-coding 454-313 chr8 89299073 89299392 + 2 NA Intergenic L1MD|LINE|L1 458479 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 372-197 chr18 2119249 2119583 + 2 NA Intergenic L1ME3Cz|LINE|L1 452089 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 531-258 chr8 139187705 139188104 + 2 NA Intergenic L1MCb|LINE|L1 -273863 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 327-312 chr22 24860717 24860892 + 2 NA intron (NM_001098498, intron 9 of 23) AluSg|SINE|Alu 54583 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 458-205 chr5 89566936 89567225 + 2 NA Intergenic Intergenic 449640 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 314-487 chr5 166043623 166043817 + 2 NA Intergenic Intergenic 882650 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 188-138 chr3 144385013 144385145 + 2 NA Intergenic Intergenic 411998 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 245-321 chr7 23810589 23810735 + 2 NA intron (NM_001260505, intron 22 of 22) (TA)n|Simple_repeat|Simple_repeat 100443 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 290-424 chr7 55079464 55079693 + 2 NA intron (NM_001346941, intron 1 of 21) MER96B|DNA|hAT-Tip100 -30261 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 274-40 chr10 41722045 41722282 + 2 NA Intergenic ALR/Alpha|Satellite|centr 645882 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 186-10 chr1 164967850 164967952 + 2 NA Intergenic Intergenic -193260 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 650-108 chr6 77513869 77514344 + 2 NA Intergenic LTR9|LTR|ERV1 -50084 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 478-290 chr8 82138709 82139052 + 2 NA Intergenic Intergenic -296594 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 139-36 chr17 58594951 58595044 + 2 NA intron (NM_031272, intron 14 of 31) intron (NM_031272, intron 14 of 31) -50669 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 381-46 chr10 43750936 43751234 + 2 NA Intergenic Intergenic 27740 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 315-219 chr2 2595192 2595375 + 2 NA Intergenic L1M1|LINE|L1 -264008 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 198-162 chr3 65160139 65160286 + 2 NA Intergenic L1MB7|LINE|L1 -472212 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 330-82 chr11 4506161 4506356 + 2 NA Intergenic L1PREC2|LINE|L1 17379 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 242-5 chr1 57512032 57512189 + 2 NA intron (NM_001353980, intron 4 of 5) MIR|SINE|MIR -87189 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 387-368 chr8 105265825 105266180 + 2 NA Intergenic L1M1|LINE|L1 -52436 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 278-258 chr22 33342034 33342276 + 2 NA intron (NM_133642, intron 9 of 14) intron (NM_133642, intron 9 of 14) 94514 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 420-313 chr9 106589661 106590031 + 2 NA Intergenic Intergenic -11082 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 337-15 chr1 97042726 97043001 + 2 NA Intergenic L1PA15|LINE|L1 -53060 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 284-351 chr6 63416052 63416287 + 2 NA Intergenic Intergenic -96186 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 566-6 chr1 170961033 170961507 + 2 NA intron (NM_001163629, intron 5 of 21) intron (NM_001163629, intron 5 of 21) 25736 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 212-296 chr7 23525083 23525236 + 2 NA intron (NM_001282757, intron 1 of 8) intron (NM_001282757, intron 1 of 8) 6822 NM_001362761 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 327-437 chr6 63963728 63963952 + 2 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 157004 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 327-541 chrX 75532548 75532755 + 2 NA Intergenic L1PBb|LINE|L1 -9149 NM_001146256 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 474-71 chr12 128650559 128650931 + 2 NA intron (NM_001136103, intron 4 of 8) intron (NM_001136103, intron 4 of 8) 173213 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 237-192 chr2 123206593 123206750 + 2 NA Intergenic Intergenic -133190 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 245-117 chr13 94601447 94601619 + 2 NA promoter-TSS (NM_180989) promoter-TSS (NM_180989) -324 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 312-384 chr4 97333259 97333475 + 2 NA Intergenic Intergenic -33559 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 274-343 chr6 165593582 165593749 + 2 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 68435 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 223-239 chr4 23939496 23939642 + 2 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -49522 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 547-111 chr2 145489946 145490454 + 2 NA Intergenic L1ME2z|LINE|L1 822233 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 654-112 chr7 8575535 8575931 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 142124 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 340-130 chr13 60530772 60531023 + 2 NA intron (NM_030794, intron 11 of 13) L2|LINE|L2 133677 NM_001146070 81550 Hs.525061 NM_030794 ENSG00000083544 TDRD3 - tudor domain containing 3 protein-coding 783-15 chr10 98796821 98797469 + 2 NA intron (NM_021828, intron 3 of 11) L1MA3|LINE|L1 127423 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 421-93 chr15 87980175 87980426 + 2 NA intron (NM_001320134, intron 12 of 12) intron (NM_001320134, intron 12 of 12) -34032 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 264-89 chr12 37900549 37900798 + 2 NA Intergenic ALR/Alpha|Satellite|centr -416101 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 315-267 chr2 224421415 224421639 + 2 NA Intergenic Intergenic -19420 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 269-94 chr12 90545652 90545850 + 2 NA Intergenic Intergenic 252433 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 735-23 chr14 56711867 56712541 + 2 NA Intergenic AluSx1|SINE|Alu 93463 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 167-72 chr20 37780859 37780976 + 2 NA intron (NM_001281495, intron 11 of 16) MER6B|DNA|TcMar-Tigger 86887 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 612-132 chr7 54164456 54164893 + 2 NA Intergenic MER4B-int|LTR|ERV1 -166023 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 424-52 chr12 33870189 33870480 + 2 NA Intergenic Intergenic -152162 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 235-182 chr2 143839064 143839231 + 2 NA Intergenic Intergenic -97920 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 286-260 chr21 28324581 28324753 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -96000 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 292-194 chr19 30397750 30397986 + 2 NA intron (NM_014717, intron 1 of 4) (GA)n|Simple_repeat|Simple_repeat 25484 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 311-183 chr16 76054618 76054802 + 2 NA Intergenic L1MA3|LINE|L1 -222691 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 303-339 chr5 4171480 4171686 + 2 NA Intergenic Intergenic 575751 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 387-12 chr1 159351031 159351367 + 2 NA Intergenic Intergenic -36540 NM_001004467 441911 Hs.553833 NM_001004467 ENSG00000196266 OR10J3 OR1-25|OR10J3P olfactory receptor family 10 subfamily J member 3 protein-coding 366-373 chr6 45527191 45527517 + 2 NA intron (NM_001015051, intron 7 of 7) L2c|LINE|L2 105079 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 217-177 chr2 100322614 100322798 + 2 NA promoter-TSS (NM_198461) promoter-TSS (NM_198461) 27 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 337-364 chr3 117976313 117976525 + 2 NA Intergenic L1M5|LINE|L1 -285494 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 326-282 chr2 205260582 205260811 + 2 NA intron (NM_057177, intron 16 of 21) L1MEd|LINE|L1 -421804 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 174 chr1 62359166 62359295 + 2 NA Intergenic Intergenic -39796 NM_181712 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 352-363 chr4 60997965 60998160 + 2 NA Intergenic L1MA3|LINE|L1 75443 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 429-158 chr2 107306565 107306863 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 42811 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 202-196 chr4 185759800 185759953 + 2 NA intron (NM_001145672, intron 1 of 20) intron (NM_001145672, intron 1 of 20) 15978 NM_001145673 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 335-151 chr14 34712228 34712470 + 2 NA non-coding (NR_028130, exon 4 of 4) non-coding (NR_028130, exon 4 of 4) 1468 NM_021914 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 300-255 chr21 29668817 29669113 + 2 NA intron (NM_000830, intron 4 of 16) intron (NM_000830, intron 4 of 16) 72925 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 279-12 chr1 88421599 88421796 + 2 NA Intergenic L1MB3|LINE|L1 -262447 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 336-111 chr11 113156115 113156332 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 117678 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 326-493 chr7 45440973 45441229 + 2 NA Intergenic L1MA1|LINE|L1 -133039 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 348-515 chr8 71169626 71169833 + 2 NA Intergenic Intergenic 186977 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 589-120 chr5 46062838 46063223 + 2 NA Intergenic ALR/Alpha|Satellite|centr -366650 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 257-143 chr17 9655242 9655464 + 2 NA intron (NM_001267576, intron 1 of 14) intron (NM_001267576, intron 1 of 14) 9816 NM_001267576 124739 Hs.709621 NM_153210 ENSG00000154914 USP43 - ubiquitin specific peptidase 43 protein-coding 672-103 chr7 55844907 55845571 + 2 NA intron (NM_207366, intron 3 of 9) L1PA13|LINE|L1 17513 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 699-11 chr10 123858770 123859240 + 2 NA intron (NM_198148, intron 3 of 13) MIRc|SINE|MIR 32802 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 295-239 chr2 194703035 194703221 + 2 NA Intergenic Intergenic -27467 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 456-151 chr2 56856232 56856516 + 2 NA Intergenic L1PA15|LINE|L1 -670604 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 252-76 chr11 94013520 94013689 + 2 NA Intergenic L1PB2|LINE|L1 -7750 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 448-238 chr6 48689309 48689752 + 2 NA Intergenic L1PREC2|LINE|L1 -620841 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 314-609 chr9 82160088 82160346 + 2 NA Intergenic Intergenic 171445 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 304-156 chr15 27829307 27829477 + 2 NA intron (NM_001300984, intron 22 of 22) intron (NM_001300984, intron 22 of 22) 269923 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 181-33 chr12 38616834 38616970 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 288689 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 287-158 chr17 20777404 20777645 + 2 NA Intergenic L1MB7|LINE|L1 65078 NR_073509 100287072 Hs.676308 NR_073509 LOC100287072 - ribosomal protein S6 kinase B1 pseudogene pseudo 262-198 chr2 35396248 35396414 + 2 NA Intergenic AluY|SINE|Alu -75074 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 367-303 chr3 188919440 188919768 + 2 NA Intergenic MER39|LTR|ERV1 28035 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 318-500 chr6 167704930 167705161 + 2 NA Intergenic Intergenic -21258 NR_117092 441178 Hs.628956 NM_001025489 ENSG00000203688 LINC02487 - long intergenic non-protein coding RNA 2487 ncRNA 640-71 chr20 15054170 15054727 + 2 NA intron (NM_001351663, intron 5 of 17) Tigger1|DNA|TcMar-Tigger -124930 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 303-124 chr14 66997782 66997949 + 2 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -191575 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 370-211 chr2 7799979 7800321 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 99505 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 661-2 chr1 49904732 49905229 + 2 NA intron (NM_001323575, intron 1 of 12) intron (NM_001323575, intron 1 of 12) 118974 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 232-8 chr1 82076139 82076323 + 2 NA Intergenic Intergenic 273778 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 334-277 chr2 108004246 108004417 + 2 NA intron (NM_021815, intron 6 of 8) intron (NM_021815, intron 6 of 8) 17807 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 422-105 chr16 11066738 11067138 + 2 NA intron (NM_015226, intron 18 of 22) Charlie18a|DNA|hAT-Charlie 122374 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 354-502 chr9 134914431 134914749 + 2 NA intron (NM_002003, intron 3 of 8) intron (NM_002003, intron 3 of 8) 3322 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 453-54 chr12 41947761 41948139 + 2 NA Intergenic Intergenic 183761 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 337-349 chr3 46278701 46279022 + 2 NA Intergenic Intergenic 36401 NM_001164680 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 195-251 chr9 30240040 30240227 + 2 NA Intergenic Intergenic 168321 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 649-18 chr12 14058946 14059415 + 2 NA Intergenic Intergenic -78824 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 135-34 chr2 110198815 110198917 + 2 NA intron (NM_207181, intron 2 of 19) HAL1ME|LINE|L1 6147 NM_207181 4867 Hs.280388 NM_000272 ENSG00000144061 NPHP1 JBTS4|NPH1|SLSN1 nephrocystin 1 protein-coding 314-353 chr22 23748014 23748241 + 2 NA intron (NM_021916, intron 1 of 1) MIRb|SINE|MIR 2985 NM_021916 7621 Hs.382874 NM_021916 ENSG00000187792 ZNF70 Cos17 zinc finger protein 70 protein-coding 396-64 chr10 130922678 130922969 + 2 NA Intergenic Intergenic 39845 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 335-585 chrX 94777462 94777706 + 2 NA Intergenic Intergenic 285642 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 561-40 chr11 117660134 117660542 + 2 NA intron (NM_020693, intron 3 of 32) MIR3|SINE|MIR 136878 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 530-265 chr8 137681571 137682031 + 2 NA Intergenic LTR16|LTR|ERVL -268213 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 242-227 chr3 2704498 2704663 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -187635 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 337-11 chr1 78386695 78387027 + 2 NA Intergenic L2a|LINE|L2 -104113 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 262-413 chr8 6098813 6098958 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 307663 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 497-159 chr20 59726082 59726532 + 2 NA intron (NM_183246, intron 1 of 11) intron (NM_183246, intron 1 of 11) 5097 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 406-5 chr1 56850914 56851182 + 2 NA Intergenic Intergenic -3722 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 339-321 chr20 43339540 43339831 + 2 NA Intergenic LTR16C|LTR|ERVL -118211 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 263-352 chr6 40431159 40431328 + 2 NA intron (NM_020737, intron 2 of 2) MIRb|SINE|MIR 52906 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 295-174 chr17 5703642 5703856 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -68485 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 326-373 chr4 61164446 61164663 + 2 NA Intergenic Intergenic 20898 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 396-382 chrX 81752840 81753123 + 2 NA Intergenic L1PA15-16|LINE|L1 550879 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 239-303 chr5 27256655 27256835 + 2 NA Intergenic Intergenic -215547 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 222-159 chr19 58171100 58171269 + 2 NA Intergenic Intergenic -11805 NM_001278734 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 461-267 chr8 85909260 85909559 + 2 NA Intergenic (GATA)n|Simple_repeat|Simple_repeat -81467 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 141-61 chr3 191964514 191964620 + 2 NA Intergenic Intergenic -274063 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 477-293 chr8 127492996 127493453 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -11085 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 454-220 chr3 169916904 169917151 + 2 NA intron (NM_182610, intron 2 of 8) intron (NM_182610, intron 2 of 8) 5455 NM_182610 344658 Hs.439922 NM_182610 ENSG00000187033 SAMD7 - sterile alpha motif domain containing 7 protein-coding 342-364 chr4 85098213 85098409 + 2 NA Intergenic L1MC1|LINE|L1 130827 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 306-15 chr1 83072632 83072844 + 2 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -86530 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 691-3 chr1 79226543 79227066 + 2 NA Intergenic Intergenic -220074 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 140-44 chr2 216894483 216894599 + 2 NA Intergenic L2b|LINE|L2 23769 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 468-179 chr21 14980142 14980465 + 2 NA intron (NM_003489, intron 3 of 3) AluSg4|SINE|Alu -61635 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 302-67 chr11 18200225 18200498 + 2 NA Intergenic L1MD2|LINE|L1 -8777 NR_026564 494141 Hs.446327 NR_026541 ENSG00000189332 SLC25A51P4 - SLC25A51 pseudogene 4 pseudo 321-57 chr10 49075647 49075955 + 2 NA intron (NM_001031746, intron 4 of 7) LTR33|LTR|ERVL 39721 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 213-201 chr4 57102491 57102690 + 2 NA intron (NM_001553, intron 1 of 4) L3b|LINE|CR1 -7172 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 360-347 chr5 10676851 10677171 + 2 NA Intergenic L1MB8|LINE|L1 84223 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 331-259 chr2 45904479 45904803 + 2 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 252966 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 890-7 chr11 112859740 112860361 + 2 NA Intergenic L2c|LINE|L2 -101370 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 522-261 chr8 134141532 134141989 + 2 NA Intergenic Intergenic 255264 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 167-52 chr2 29829525 29829673 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 91987 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 470-42 chr11 107612416 107612869 + 2 NA intron (NM_001308018, intron 1 of 12) MamSINE1|SINE|tRNA-RTE 21495 NM_018712 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 347-377 chr5 20014598 20014854 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -26526 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 464-95 chr18 8039188 8039451 + 2 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 327715 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 227-234 chr3 131241069 131241288 + 2 NA intron (NM_001353043, intron 15 of 17) intron (NM_001353043, intron 15 of 17) -120667 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 587-34 chr12 1901671 1902230 + 2 NA intron (NM_172364, intron 6 of 37).2 L1MA3|LINE|L1 16702 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 466-240 chr7 11323527 11323839 + 2 NA Intergenic L1MDa|LINE|L1 349811 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 213-114 chr17 54003486 54003692 + 2 NA Intergenic L2c|LINE|L2 180662 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 342-329 chr3 105012704 105012929 + 2 NA Intergenic MIRb|SINE|MIR -353897 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 387-395 chr9 90484681 90484998 + 2 NA intron (NR_034157, intron 5 of 5) intron (NR_034157, intron 5 of 5) -51350 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 206-32 chr10 71031935 71032055 + 2 NA Intergenic Intergenic 92942 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 682-89 chr6 59174191 59174734 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1213016 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 321-545 chr8 51287638 51287864 + 2 NA Intergenic L1PB2|LINE|L1 521694 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 573-210 chr9 27048132 27048499 + 2 NA intron (NM_025103, intron 16 of 19) intron (NM_025103, intron 16 of 19) -42643 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 296-313 chr3 156213820 156214009 + 2 NA intron (NM_003471, intron 1 of 13) MER21C|LTR|ERVL 13969 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 364-56 chr10 45025185 45025430 + 2 NA Intergenic L1MA5|LINE|L1 24384 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 526-272 chrX 131026064 131026438 + 2 NA intron (NR_126350, intron 2 of 2) L2c|LINE|L2 31895 NR_126350 104266960 Hs.573575 NR_126350 ENSG00000228659 LINC01201 TCONS_00017091 long intergenic non-protein coding RNA 1201 ncRNA 231-267 chr4 144377809 144377996 + 2 NA Intergenic Intergenic -237184 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 368-444 chr8 46050777 46050998 + 2 NA Intergenic ALR/Alpha|Satellite|centr 566756 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 293-250 chr3 5406704 5406889 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -156541 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 395-346 chr8 134446066 134446300 + 2 NA Intergenic L2c|LINE|L2 -151888 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 176-55 chr2 60244391 60244492 + 2 NA Intergenic Intergenic 138595 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 306-197 chr17 61859988 61860184 + 2 NA intron (NM_032043, intron 2 of 19) intron (NM_032043, intron 2 of 19) 3473 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 446-21 chr1 188023086 188023525 + 2 NA Intergenic L2c|LINE|L2 579677 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 272-275 chr3 102014452 102014629 + 2 NA Intergenic L1MC|LINE|L1 73681 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 405-331 chr8 116968729 116969113 + 2 NA intron (NM_001172811, intron 2 of 9) AluSc|SINE|Alu 17946 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 353-186 chr17 57850819 57851039 + 2 NA promoter-TSS (NM_016070) promoter-TSS (NM_016070) -885 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 471-72 chr12 107978418 107978860 + 2 NA Intergenic Intergenic -74868 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 269-354 chr6 110282119 110282307 + 2 NA intron (NM_001123364, intron 4 of 4) intron (NM_001123364, intron 4 of 4) 47845 NM_001354595 728464 Hs.634429 NM_001123364 ENSG00000053328 METTL24 C6orf186 methyltransferase like 24 protein-coding 362-273 chr3 87927741 87928022 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -54695 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 498-284 chr8 136434128 136434498 + 2 NA Intergenic L1MA2|LINE|L1 -96485 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 217-377 chr8 131827098 131827276 + 2 NA Intergenic MIR1_Amn|SINE|MIR -76906 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 229-110 chr14 48674980 48675122 + 2 NA Intergenic L1PA16|LINE|L1 -880037 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 215-64 chr12 17761625 17761766 + 2 NA Intergenic Intergenic 88396 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 375-124 chr14 44737997 44738221 + 2 NA Intergenic Intergenic 61017 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 430-38 chr10 82600388 82600799 + 2 NA intron (NR_163253, intron 3 of 10) AluSg|SINE|Alu -367673 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 391-187 chr2 160558988 160559202 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -65288 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 509-12 chr1 158310192 158310489 + 2 NA Intergenic L1PA13|LINE|L1 20417 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 348-338 chr4 13974977 13975183 + 2 NA Intergenic Intergenic -136888 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 297-26 chr1 168729597 168729785 + 2 NA promoter-TSS (NM_001937) promoter-TSS (NM_001937) -485 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 287-154 chr16 17029537 17029789 + 2 NA Intergenic MIR|SINE|MIR -104841 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 358-190 chr2 13590420 13590679 + 2 NA Intergenic L1P4a|LINE|L1 -583536 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 325-356 chr3 108731685 108731964 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 25459 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 678-35 chr16 60512350 60512947 + 2 NA Intergenic Intergenic -152855 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 440-187 chr4 187581409 187581770 + 2 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) -75976 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 313-15 chr1 88516683 88516922 + 2 NA Intergenic Intergenic -167342 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 472-2 chr1 33809609 33810036 + 2 NA intron (NM_052896, intron 10 of 69) L1ME3E|LINE|L1 -50653 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 186-169 chr8 134500874 134501028 + 2 NA intron (NM_001174158, intron 13 of 13) intron (NM_001174158, intron 13 of 13) -97120 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 219-69 chr12 19040740 19040887 + 2 NA Intergenic Intergenic -88920 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 531-209 chr6 17203071 17203538 + 2 NA Intergenic Intergenic -78057 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 177-156 chr8 60891513 60891642 + 2 NA Intergenic L2c|LINE|L2 76171 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 189-76 chr18 39647402 39647541 + 2 NA intron (NR_024391, intron 2 of 3) L1ME1|LINE|L1 -25296 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 322-55 chr10 33044359 33044653 + 2 NA Intergenic Intergenic 72301 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 561-182 chr7 54059800 54060184 + 2 NA Intergenic Intergenic -248061 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 269-318 chr5 65172580 65172797 + 2 NA intron (NR_135689, intron 24 of 25) intron (NR_135689, intron 24 of 25) 309232 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 307-519 chr9 87150073 87150330 + 2 NA intron (NR_161226, intron 1 of 1) intron (NR_161226, intron 1 of 1) 1557 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 537-263 chr8 129061742 129062133 + 2 NA Intergenic L3|LINE|CR1 -95936 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 523-180 chr3 90365974 90366335 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1258533 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 674-63 chr4 36961432 36961845 + 2 NA Intergenic Intergenic -40141 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 571-182 chr8 136455804 136456224 + 2 NA Intergenic Intergenic -74784 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 284-26 chr10 17360858 17361068 + 2 NA intron (NM_001004470, intron 3 of 7) GA-rich|Low_complexity|Low_complexity -25973 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 148-18 chr12 106539105 106539217 + 2 NA intron (NR_040246, intron 1 of 3) intron (NR_040246, intron 1 of 3) -43746 NM_213594 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 179-5 chr10 46068131 46068281 + 2 NA Intergenic MIR|SINE|MIR -21937 NM_138634 4477 Hs.255462 NM_002443 ENSG00000263639 MSMB HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94 microseminoprotein beta protein-coding 480-270 chr7 32606856 32607252 + 2 NA intron (NR_036680, intron 12 of 16) AluSx1|SINE|Alu 111565 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 238-150 chr18 40811266 40811455 + 2 NA Intergenic Intergenic 709317 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 286-104 chr13 61144408 61144585 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 55384 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 437-164 chr21 31017539 31017882 + 2 NA Intergenic Intergenic 20766 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 463-39 chr10 53134845 53135197 + 2 NA Intergenic Intergenic -363321 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 606-91 chr2 169314300 169314836 + 2 NA intron (NM_004525, intron 3 of 78) intron (NM_004525, intron 3 of 78) 47966 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 447-9 chr1 163789791 163790149 + 2 NA Intergenic Intergenic -366779 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 465-326 chrX 153216383 153216794 + 2 NA Intergenic Intergenic 37304 NM_004988 4100 Hs.72879 NM_004988 ENSG00000198681 MAGEA1 CT1.1|MAGE1 MAGE family member A1 protein-coding 127-30 chr14 78307024 78307102 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -96656 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 213-16 chr1 187083529 187083693 + 2 NA Intergenic Intergenic -9231 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 376-70 chr11 50516241 50516464 + 2 NA Intergenic ALR/Alpha|Satellite|centr 107205 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 301-498 chrX 135639379 135639634 + 2 NA Intergenic Intergenic 46588 NR_147090 644717 Hs.556140 NR_147090 SAGE2P - sarcoma antigen 2, pseudogene pseudo 370-101 chr11 116403307 116403509 + 2 NA Intergenic Intergenic -236014 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 125-4 chr10 4550862 4550963 + 2 NA Intergenic Intergenic -105244 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 271-333 chr5 12987503 12987724 + 2 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 45273 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 546-15 chr10 11079954 11080342 + 2 NA intron (NR_046108, intron 4 of 6) MIRb|SINE|MIR 25340 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 299-395 chr6 62768383 62768593 + 2 NA Intergenic L1M2|LINE|L1 -482261 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 354-230 chr2 147482315 147482562 + 2 NA Intergenic Intergenic -362079 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 543-222 chr7 24206134 24206514 + 2 NA Intergenic L1ME3B|LINE|L1 -77866 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 253-315 chr5 5281970 5282147 + 2 NA intron (NM_139056, intron 18 of 22) intron (NM_139056, intron 18 of 22) -140619 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 302-360 chr5 147387700 147387909 + 2 NA TTS (NM_001287740) TTS (NM_001287740) 65888 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 483-68 chr14 71057824 71058127 + 2 NA intron (NM_014982, intron 26 of 35) MamSINE1|SINE|tRNA-RTE 150516 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 318-82 chr10 99039462 99039762 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -115044 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 317-524 chr9 35594269 35594444 + 2 NA Intergenic L1M3f|LINE|L1 -10906 NM_006285 7016 Hs.708096 NM_006285 ENSG00000107140 TESK1 - testis associated actin remodelling kinase 1 protein-coding 340-187 chr16 53296167 53296422 + 2 NA intron (NM_001352157, intron 28 of 37) intron (NM_001352157, intron 28 of 37) 74918 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 377-54 chr10 115177427 115177748 + 2 NA intron (NM_207303, intron 8 of 28) intron (NM_207303, intron 8 of 28) 84222 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 283-342 chr4 179399202 179399358 + 2 NA Intergenic L2|LINE|L2 -1491344 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 320-171 chr15 63584744 63585056 + 2 NA intron (NM_001256702, intron 10 of 13) L1MB4|LINE|L1 -12487 NM_001367808 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 239-38 chr10 78525488 78525669 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie 258236 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 210-32 chr10 59500029 59500222 + 2 NA Intergenic Intergenic -136944 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 243-263 chr21 28380045 28380260 + 2 NA Intergenic L1M5|LINE|L1 -151485 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 269-328 chr5 153009331 153009513 + 2 NA Intergenic Intergenic -37073 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 373-187 chr2 33980061 33980410 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -86991 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 384-194 chr2 221304791 221305159 + 2 NA Intergenic Intergenic 267329 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 506-141 chr2 66879469 66879797 + 2 NA Intergenic L1ME2|LINE|L1 -24803 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 271-78 chr11 100028878 100029114 + 2 NA intron (NM_001243270, intron 8 of 23) intron (NM_001243270, intron 8 of 23) 472851 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 492-213 chr5 109256235 109256601 + 2 NA intron (NR_149040, intron 3 of 3) intron (NR_149040, intron 3 of 3) 69951 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 339-189 chr16 24863676 24863947 + 2 NA intron (NM_001258412, intron 4 of 14) L1M4|LINE|L1 17580 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 member 11 protein-coding 307-368 chr5 7799901 7800141 + 2 NA intron (NM_020546, intron 20 of 24) intron (NM_020546, intron 20 of 24) 51112 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 262-29 chr1 232003920 232004157 + 2 NA intron (NM_001164538, intron 10 of 10) L1MDa|LINE|L1 78204 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 270-328 chr6 36589835 36589981 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -4405 NR_036610 6428 Hs.405144 NM_003017 ENSG00000112081 SRSF3 SFRS3|SRp20 serine and arginine rich splicing factor 3 protein-coding 542-28 chr10 105259737 105260067 + 2 NA intron (NM_014978, intron 25 of 26) intron (NM_014978, intron 25 of 26) 560431 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 266-198 chr2 160510478 160510666 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -16765 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 763-30 chr2 124854719 124855342 + 2 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 829743 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 242-346 chr6 77285149 77285338 + 2 NA Intergenic L1MC4|LINE|L1 178779 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 357-74 chr11 113204101 113204306 + 2 NA intron (NM_181351, intron 2 of 18) intron (NM_181351, intron 2 of 18) 69698 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 271-448 chr8 101814109 101814291 + 2 NA intron (NM_001040628, intron 4 of 7) L1MC1|LINE|L1 -23231 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 329-269 chr2 51404774 51404967 + 2 NA intron (NR_135237, intron 4 of 10) L1MC1|LINE|L1 372269 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 603-106 chr3 21685756 21686247 + 2 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 65209 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 463-262 chr7 32108332 32108673 + 2 NA intron (NM_001322059, intron 3 of 17) HAL1|LINE|L1 -37066 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 304-245 chr2 35797836 35798101 + 2 NA Intergenic Intergenic 326563 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 479-265 chr8 137803573 137803854 + 2 NA Intergenic Intergenic 279832 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 213-179 chr3 86674417 86674572 + 2 NA Intergenic Intergenic 192551 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 269-120 chr14 79000425 79000619 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -199460 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 188-201 chr8 50268921 50269080 + 2 NA intron (NR_135797, intron 2 of 20) L1MD|LINE|L1 104869 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 299-419 chr7 52812789 52812983 + 2 NA Intergenic L1MB8|LINE|L1 -222747 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 497-64 chr12 121074691 121075051 + 2 NA Intergenic L1MB7|LINE|L1 -35629 NM_001261825 8638 Hs.118633 NM_003733 ENSG00000135114 OASL OASL1|OASLd|TRIP-14|TRIP14|p59 OASL|p59-OASL|p59OASL 2'-5'-oligoadenylate synthetase like protein-coding 246-362 chr7 17800226 17800403 + 2 NA intron (NM_001350862, intron 22 of 25) intron (NM_001350862, intron 22 of 25) 140180 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 528-120 chr19 41041141 41041506 + 2 NA Intergenic L1MB8|LINE|L1 -47128 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 225-60 chr11 60253239 60253384 + 2 NA Intergenic L1ME3Cz|LINE|L1 -10174 NM_001351235 643680 Hs.559934 NM_001351235 MS4A4E - membrane spanning 4-domains A4E protein-coding 396-255 chr4 96453724 96454068 + 2 NA intron (NR_147149, intron 2 of 3) L1PA14|LINE|L1 143193 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 553-93 chr18 64789358 64789724 + 2 NA Intergenic Intergenic -529486 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 278-276 chr3 80839666 80839813 + 2 NA Intergenic L2a|LINE|L2 69035 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 490-234 chr5 174962035 174962439 + 2 NA intron (NR_046113, intron 2 of 2) intron (NR_046113, intron 2 of 2) 33494 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 187-136 chr5 11895802 11895952 + 2 NA intron (NM_001288717, intron 1 of 20) L1ME4a|LINE|L1 8569 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 128-13 chr11 129963765 129963842 + 2 NA intron (NM_199437, intron 1 of 20) L1MC4|LINE|L1 -7773 NM_001367895 56980 Hs.275086 NM_020228 ENSG00000170325 PRDM10 PFM7|TRIS PR/SET domain 10 protein-coding 351-84 chr12 11794455 11794646 + 2 NA intron (NM_001987, intron 2 of 7) intron (NM_001987, intron 2 of 7) 144696 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 428-285 chr8 30048662 30048954 + 2 NA Intergenic Intergenic 34256 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 231-278 chr5 39869114 39869257 + 2 NA Intergenic Intergenic -183106 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 238-124 chr16 13474372 13474570 + 2 NA Intergenic MIRb|SINE|MIR -445686 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 419-156 chr2 207159990 207160320 + 2 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) 5793 NM_003709 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 294-19 chr1 181851611 181851833 + 2 NA Intergenic L1PA8A|LINE|L1 209990 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 317-149 chr14 62474024 62474194 + 2 NA Intergenic L1MEg|LINE|L1 -334136 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 188-38 chr12 44466282 44466397 + 2 NA Intergenic Intergenic 409322 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 312-240 chr2 79875448 79875618 + 2 NA intron (NM_001282598, intron 6 of 17) intron (NM_001282598, intron 6 of 17) -8950 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 360-123 chr14 65457126 65457348 + 2 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) -13865 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 304-365 chr3 188778531 188778724 + 2 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 89846 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 401-247 chr4 189295140 189295494 + 2 NA Intergenic L1MB4|LINE|L1 -364289 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 248-253 chr3 117452669 117452900 + 2 NA Intergenic Intergenic 238141 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 358-23 chr1 212505573 212505892 + 2 NA Intergenic Intergenic -39962 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 382-161 chr19 9383377 9383609 + 2 NA TTS (NM_001202425) TTS (NM_001202425) 7177 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 447-39 chr11 50434018 50434295 + 2 NA Intergenic ALR/Alpha|Satellite|centr 25009 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 567-72 chr17 63813493 63813820 + 2 NA intron (NM_203499, intron 15 of 17) L3|LINE|CR1 -13775 NM_002805 5705 Hs.79387 NM_002805 ENSG00000087191 PSMC5 S8|SUG-1|SUG1|TBP10|TRIP1|p45|p45/SUG proteasome 26S subunit, ATPase 5 protein-coding 220-24 chr1 174327205 174327360 + 2 NA intron (NM_001366445, intron 11 of 13) L1MA6|LINE|L1 52182 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 337-607 chrX 147652624 147652845 + 2 NA Intergenic UCON12A|Unknown|Unknown 259083 NR_024503 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 282-439 chr8 51966537 51966747 + 2 NA Intergenic L1MC2|LINE|L1 -67456 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 425-256 chr6 36170584 36170910 + 2 NA Intergenic L1ME1|LINE|L1 -25997 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 320-276 chr2 133397396 133397577 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 131291 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 242-357 chr7 2216446 2216668 + 2 NA intron (NM_001013837, intron 7 of 18) L1MC1|LINE|L1 16388 NM_003550 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 461-166 chr3 29056998 29057326 + 2 NA Intergenic MER57A1|LTR|ERV1 223777 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 234-239 chr3 80256223 80256383 + 2 NA Intergenic MIRc|SINE|MIR -488305 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 310-126 chr14 38486903 38487095 + 2 NA Intergenic L1MA3|LINE|L1 -230906 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 475-200 chr4 36570361 36570708 + 2 NA intron (NR_149124, intron 3 of 4) Tigger1|DNA|TcMar-Tigger 71366 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 304-221 chr19 20500047 20500349 + 2 NA Intergenic Intergenic 65583 NM_001159293 100129842 Hs.515696 NM_001159293 ENSG00000237440 ZNF737 ZNF102 zinc finger protein 737 protein-coding 556-35 chr11 54860159 54860525 + 2 NA Intergenic ALR/Alpha|Satellite|centr 153510 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 220-85 chr12 43763935 43764090 + 2 NA intron (NM_001351339, intron 2 of 13) intron (NM_001351339, intron 2 of 13) 5068 NM_001351343 51135 Hs.138499 NM_016123 ENSG00000198001 IRAK4 IPD1|IRAK-4|NY-REN-64|REN64 interleukin 1 receptor associated kinase 4 protein-coding 364-318 chr4 149012502 149012707 + 2 NA Intergenic Intergenic -70226 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 280-74 chr11 43101173 43101364 + 2 NA Intergenic MLT2E|LTR|ERVL 168101 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 251-206 chr20 53983996 53984189 + 2 NA intron (NM_003657, intron 7 of 11) MER113A|DNA|hAT-Charlie 74928 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 381-233 chr22 27352269 27352588 + 2 NA Intergenic Intergenic 41777 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 356-467 chr8 41065742 41066021 + 2 NA Intergenic Intergenic -168055 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 414-300 chr7 26087021 26087327 + 2 NA Intergenic Intergenic -65024 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 222-148 chr18 54096925 54097075 + 2 NA Intergenic Intergenic 125412 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 417-142 chr2 84157738 84158004 + 2 NA Intergenic Intergenic -132811 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 345-463 chr6 45601665 45601895 + 2 NA Intergenic L1M4a2|LINE|L1 179505 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 226-56 chr11 81745298 81745464 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 145455 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 212-8 chr1 111841964 111842162 + 2 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 14842 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 355-513 chr8 132376756 132377088 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 70340 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 392-314 chr7 141123680 141123928 + 2 NA intron (NM_001195278, intron 1 of 3) AluJb|SINE|Alu 49740 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 375-322 chr5 63742867 63743222 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 219248 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 368-235 chr2 88908097 88908317 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 95837 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 252-254 chr3 27302246 27302404 + 2 NA intron (NM_152534, intron 13 of 38) HAL1b|LINE|L1 67058 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 331-565 chrX 40805143 40805344 + 2 NA Intergenic MER52-int|LTR|ERV1 27953 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 214-16 chr1 97413948 97414128 + 2 NA intron (NM_000110, intron 14 of 22) intron (NM_000110, intron 14 of 22) 318115 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 208-76 chr14 78483661 78483834 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 80028 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 405-54 chr12 14466372 14466684 + 2 NA exon (NM_018179, exon 10 of 15) exon (NM_018179, exon 10 of 15) 81247 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 213-295 chr9 9568476 9568646 + 2 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -230831 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 702-72 chr4 83718089 83718573 + 2 NA Intergenic Intergenic 182223 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 241-318 chr5 163653981 163654169 + 2 NA Intergenic L1MB7|LINE|L1 148456 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 468-16 chr1 199561828 199562214 + 2 NA Intergenic L1MA1|LINE|L1 413423 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 337-158 chr14 72227636 72227824 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -289090 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 176-135 chr8 21823822 21823948 + 2 NA Intergenic Intergenic -35010 NM_001165038 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 218-211 chr3 49264876 49265083 + 2 NA Intergenic AluJo|SINE|Alu -9141 NR_036233 100422952 NR_036233 ENSG00000264633 MIR4271 - microRNA 4271 ncRNA 261-168 chr19 37447755 37447948 + 2 NA intron (NM_152484, intron 2 of 5) L1MCc|LINE|L1 19593 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 683-100 chrX 66818091 66818439 + 2 NA Intergenic L1MA2|LINE|L1 -178967 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 309-591 chrX 148191585 148191834 + 2 NA Intergenic Intergenic 210372 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 362-2 chr1 18269072 18269327 + 2 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 161401 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 119-46 chr3 75107248 75107350 + 2 NA Intergenic Intergenic -107177 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 382-214 chr2 118878538 118878794 + 2 NA Intergenic Intergenic -30483 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 294-277 chr22 34693294 34693530 + 2 NA Intergenic Intergenic 304504 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 193-56 chr14 46852003 46852109 + 2 NA intron (NM_001113498, intron 15 of 16) intron (NM_001113498, intron 15 of 16) -200275 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 319-320 chr3 8705365 8705672 + 2 NA Intergenic Intergenic -28282 NM_033337 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|MPDT|RMD2|VIP-21|VIP21 caveolin 3 protein-coding 227-67 chr11 82370901 82371073 + 2 NA intron (NR_120571, intron 1 of 7) LTR16E2|LTR|ERVL 32926 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 185-220 chrX 99768607 99768756 + 2 NA Intergenic L1MB1|LINE|L1 641592 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 459-322 chr8 144588205 144588475 + 2 NA intron (NM_025251, intron 1 of 10) intron (NM_025251, intron 1 of 10) 17355 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 288-109 chr14 25020531 25020760 + 2 NA intron (NM_001304476, intron 1 of 6) intron (NM_001304476, intron 1 of 6) 28355 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 113-23 chr16 35265358 35265434 + 2 NA Intergenic Intergenic 69637 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 284-128 chr14 101252358 101252629 + 2 NA Intergenic Intergenic 131637 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 520-47 chr11 30634578 30634905 + 2 NA Intergenic Intergenic -48388 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 346-420 chr6 49231386 49231719 + 2 NA Intergenic L1MA2|LINE|L1 231701 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 401-22 chr10 18767668 18768067 + 2 NA Intergenic Intergenic 108436 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 468-103 chr16 73442231 73442628 + 2 NA Intergenic AluJb|SINE|Alu 55624 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 358-428 chr7 18200209 18200423 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -73007 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 253-113 chr13 20583820 20583996 + 2 NA intron (NR_148465, intron 3 of 20) L1MB2|LINE|L1 16751 NM_001353572 8100 Hs.187376 NM_006531 ENSG00000032742 IFT88 D13S1056E|DAF19|TG737|TTC10|hTg737 intraflagellar transport 88 protein-coding 470-62 chr13 55900572 55900926 + 2 NA Intergenic L1PB3|LINE|L1 726295 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 422-54 chr12 3875689 3876024 + 2 NA Intergenic L1M5|LINE|L1 -2408 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 310-14 chr1 109279717 109279926 + 2 NA 3' UTR (NM_001350242, exon 8 of 8) 3' UTR (NM_001350242, exon 8 of 8) 3323 NM_001350237 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 350-176 chr17 52483424 52483765 + 2 NA intron (NR_146898, intron 1 of 3) L1MEg|LINE|L1 93072 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 481-176 chr20 43765468 43765938 + 2 NA Intergenic Intergenic -38701 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 377-65 chr11 47979596 47979875 + 2 NA promoter-TSS (NM_002843) promoter-TSS (NM_002843) -824 NM_002843 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 374-227 chr20 58028909 58029102 + 2 NA Intergenic Intergenic 25101 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 338-367 chr4 15141360 15141665 + 2 NA intron (NR_125911, intron 2 of 5) MLT1O|LTR|ERVL-MaLR 139031 NM_182485 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 563-61 chr16 52186778 52187208 + 2 NA Intergenic Intergenic -71571 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 334-82 chr11 37375653 37375938 + 2 NA Intergenic L1M5|LINE|L1 -562806 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 226-190 chr2 218469632 218469792 + 2 NA intron (NM_020935, intron 20 of 25) intron (NM_020935, intron 20 of 25) 50589 NM_007127 7429 Hs.654595 NM_007127 ENSG00000127831 VIL1 D2S1471|VIL villin 1 protein-coding 356-166 chr15 69899782 69900033 + 2 NA Intergenic L2c|LINE|L2 64673 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 386-197 chr2 211585700 211586005 + 2 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 840508 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 351-384 chr5 59969730 59970064 + 2 NA intron (NM_001165899, intron 3 of 16) THE1C|LTR|ERVL-MaLR -76171 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 596-104 chr2 185926590 185927013 + 2 NA Intergenic Intergenic -126650 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 553-176 chr4 76299136 76299566 + 2 NA intron (NM_001242939, intron 6 of 6) AluSg|SINE|Alu -6675 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 510-120 chr19 36649838 36650330 + 2 NA intron (NM_001322821, intron 4 of 5) AluSx1|SINE|Alu 16753 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 408-272 chr5 109514290 109514571 + 2 NA Intergenic Intergenic -104456 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 185-164 chr5 56974825 56974994 + 2 NA Intergenic L1ME5|LINE|L1 -22779 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 490-55 chr11 54952955 54953428 + 2 NA Intergenic ALR/Alpha|Satellite|centr 246359 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 455-91 chr17 33687118 33687473 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -153535 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 326-122 chr12 17518948 17519164 + 2 NA Intergenic Intergenic 70022 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 418-82 chr15 96724640 96724914 + 2 NA Intergenic Intergenic 56877 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 201-170 chr4 35490538 35490660 + 2 NA Intergenic Intergenic 753340 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 276-384 chr5 144582968 144583186 + 2 NA Intergenic Intergenic 377686 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 278-344 chr5 85260508 85260769 + 2 NA Intergenic Intergenic -875758 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 388-287 chr5 90065769 90066145 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -49237 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 279-326 chr5 56750982 56751197 + 2 NA Intergenic Intergenic 21782 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 230-7 chr1 66878841 66879000 + 2 NA intron (NM_024763, intron 4 of 16) L1MC3|LINE|L1 45936 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 458-45 chr11 115805714 115806091 + 2 NA Intergenic Intergenic -45702 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 517-241 chr6 160262203 160262589 + 2 NA Intergenic L3|LINE|CR1 -3575 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 193-129 chr20 43410436 43410600 + 2 NA Intergenic L1P4|LINE|L1 -47378 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 601-67 chr19 39802539 39803016 + 2 NA Intergenic L2c|LINE|L2 26183 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 216-161 chr2 23203710 23203887 + 2 NA Intergenic Intergenic -181381 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 252-395 chr7 25634001 25634222 + 2 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 29029 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 589-34 chr15 38781639 38782013 + 2 NA Intergenic Intergenic 85228 NR_160786 371-206 chr2 226675702 226675893 + 2 NA Intergenic Intergenic -17004 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 186-54 chr14 84616130 84616280 + 2 NA Intergenic Intergenic -655727 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 240-176 chr17 53621761 53621977 + 2 NA Intergenic AluSz|SINE|Alu -201058 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 559-150 chr5 124141436 124141918 + 2 NA intron (NR_125774, intron 4 of 5) L1MD1|LINE|L1 296843 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 250-336 chr5 36097865 36098046 + 2 NA TTS (NM_001007527) TTS (NM_001007527) -31073 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 362-249 chr20 61106814 61107083 + 2 NA Intergenic Intergenic 27884 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 355-221 chr19 46548833 46549018 + 2 NA intron (NM_001370550, intron 1 of 2) intron (NM_001370550, intron 1 of 2) 51991 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 659-110 chr7 118369841 118370246 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 145339 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 564-93 chr2 23896881 23897423 + 2 NA intron (NR_125717, intron 1 of 28) L1MC4|LINE|L1 29971 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 287-447 chrX 43705740 43705911 + 2 NA intron (NM_001270458, intron 4 of 15) L1MB8|LINE|L1 50918 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 402-26 chr10 10403404 10403712 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 58791 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 277-267 chr3 110399074 110399232 + 2 NA Intergenic Intergenic 670806 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 218-239 chr4 57707399 57707556 + 2 NA Intergenic L2b|LINE|L2 281605 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 448-191 chr4 136792783 136793122 + 2 NA Intergenic Intergenic -400804 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 351-189 chr18 66197411 66197723 + 2 NA Intergenic Intergenic 406523 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 301-461 chr8 115836470 115836672 + 2 NA Intergenic Intergenic -167596 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 365-167 chr18 75693484 75693667 + 2 NA Intergenic Intergenic 18828 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 209-93 chr14 67291947 67292090 + 2 NA intron (NM_001256550, intron 3 of 14) L1ME4a|LINE|L1 50583 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 431-298 chr8 118350744 118351101 + 2 NA intron (NM_001363274, intron 4 of 4) intron (NM_001363274, intron 4 of 4) -239103 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 320-238 chr19 37414612 37414872 + 2 NA intron (NM_001330482, intron 4 of 4) L1M5|LINE|L1 43643 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 276-353 chr4 120953840 120953988 + 2 NA Intergenic LTR8B|LTR|ERV1 -31048 NM_018699 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 512-76 chr14 66216717 66217148 + 2 NA Intergenic MER83B-int|LTR|ERV1 -269439 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 235-295 chr5 124489677 124489848 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -51242 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 318-564 chr8 142087128 142087415 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -89068 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 216-358 chrX 67796944 67797113 + 2 NA Intergenic L1PB3|LINE|L1 252405 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 244-322 chr6 66004086 66004252 + 2 NA Intergenic Intergenic 216290 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 276-161 chr15 37686581 37686772 + 2 NA Intergenic MIR|SINE|MIR -247931 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 334-389 chr4 104313130 104313416 + 2 NA Intergenic L1MA2|LINE|L1 -177692 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 213-235 chr5 101113451 101113575 + 2 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -210231 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 353-416 chr5 99899708 99900021 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 365874 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 355-73 chr10 125675795 125676082 + 2 NA intron (NM_001128202, intron 1 of 3) L1MA3|LINE|L1 7225 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 317-222 chr2 44733699 44733934 + 2 NA intron (NM_024766, intron 7 of 10) intron (NM_024766, intron 7 of 10) 205072 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 324-124 chr12 94507794 94508071 + 2 NA Intergenic Intergenic -47478 NM_001368038 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 691-55 chr3 192258785 192259391 + 2 NA intron (NR_046596, intron 1 of 4) intron (NR_046596, intron 1 of 4) 20458 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 639-112 chr7 122782165 122782765 + 2 NA intron (NM_001167940, intron 1 of 29) AluJb|SINE|Alu -79543 NM_198085 378925 Hs.675191 NM_198085 ENSG00000235631 RNF148 - ring finger protein 148 protein-coding 315-3 chr1 6816236 6816505 + 2 NA intron (NM_001349627, intron 2 of 3) L2a|LINE|L2 30916 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 292-36 chr10 31185391 31185552 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -2412 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 534-104 chr2 14367063 14367495 + 2 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 33679 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 202-158 chr3 32721985 32722109 + 2 NA intron (NR_046352, intron 7 of 16) intron (NR_046352, intron 7 of 16) 26506 NM_001256742 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 308-37 chr1 207625811 207625995 + 2 NA intron (NM_000573, intron 37 of 38) LTR8B|LTR|ERV1 -19230 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 215-172 chr20 40353014 40353191 + 2 NA Intergenic MIRb|SINE|MIR 336134 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 455-43 chr11 14183974 14184270 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 174363 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 654-63 chr2 19149100 19149528 + 2 NA Intergenic L1MB1|LINE|L1 -122343 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 325-417 chr4 175886831 175887045 + 2 NA intron (NR_048571, intron 1 of 5) L1MEd|LINE|L1 -73824 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 446-200 chr3 127979532 127979810 + 2 NA intron (NM_001370224, intron 5 of 6) MER3|DNA|hAT-Charlie 64439 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 252-231 chr20 41405929 41406153 + 2 NA intron (NM_032221, intron 36 of 36) MIRb|SINE|MIR -39223 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 397-243 chr5 13361768 13362014 + 2 NA Intergenic Intergenic -329005 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 565-167 chr7 7729656 7730080 + 2 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) -11261 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 168-13 chr10 82262767 82262916 + 2 NA intron (NM_001370082, intron 3 of 10) MIRb|SINE|MIR -29921 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 179-64 chr3 6076003 6076133 + 2 NA Intergenic L1MA4|LINE|L1 729381 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 318-74 chr10 80977172 80977339 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 327458 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 178-53 chr16 76291581 76291699 + 2 NA intron (NR_136213, intron 1 of 23) intron (NR_136213, intron 1 of 23) 14239 NM_001322191 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 762-13 chr11 89217506 89218102 + 2 NA intron (NM_000372, intron 2 of 4) intron (NM_000372, intron 2 of 4) 39929 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 356-214 chr19 12209597 12209887 + 2 NA Intergenic LTR52-int|LTR|ERVL 14727 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 477-17 chr1 152090981 152091314 + 2 NA Intergenic Intergenic -2083 NM_001008536 126637 Hs.546477 NM_001008536 ENSG00000182898 TCHHL1 S100A17|THHL1 trichohyalin like 1 protein-coding 496-97 chr15 42245982 42246370 + 2 NA intron (NM_015497, intron 6 of 19) L1MB5|LINE|L1 27257 NM_015497 25963 Hs.511138 NM_015497 ENSG00000103978 TMEM87A - transmembrane protein 87A protein-coding 554-93 chr17 52938113 52938597 + 2 NA Intergenic L1MDa|LINE|L1 -47150 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 501-158 chr3 30159553 30159906 + 2 NA Intergenic Intergenic -225573 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 289-178 chr17 53237897 53238167 + 2 NA Intergenic Intergenic 252527 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 325-164 chr14 46999925 47000158 + 2 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 343205 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 362-319 chr4 95570913 95571139 + 2 NA Intergenic L1MA5|LINE|L1 -22053 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 506-277 chr8 59224335 59224682 + 2 NA Intergenic Intergenic 105298 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 262-85 chr11 90348569 90348809 + 2 NA intron (NR_104190, intron 1 of 6) L1MCa|LINE|L1 97457 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 251-298 chr5 38298322 38298542 + 2 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -7446 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 325-494 chr7 10054734 10054988 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 420591 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 329-515 chr6 161510596 161510761 + 2 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) 39701 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 228-245 chr4 64015622 64015781 + 2 NA Intergenic MER70-int|LTR|ERVL 393749 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 368-270 chr20 58756903 58757158 + 2 NA Intergenic Intergenic -16395 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 322-348 chr3 128957015 128957185 + 2 NA intron (NM_001348520, intron 8 of 14) L1MDa|LINE|L1 34797 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 302-119 chr13 94352586 94352778 + 2 NA intron (NM_005708, intron 6 of 8) LTR33|LTR|ERVL 127000 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 293-324 chr4 179825152 179825403 + 2 NA Intergenic Intergenic 1333872 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 424-81 chr15 77243514 77243803 + 2 NA intron (NM_024776, intron 4 of 7) intron (NM_024776, intron 4 of 7) -18254 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 342-470 chr6 156121600 156121794 + 2 NA Intergenic Intergenic 174900 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 213-99 chr15 61867542 61867711 + 2 NA 3' UTR (NM_018080, exon 80 of 80) 3' UTR (NM_018080, exon 80 of 80) 137708 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 390-437 chrX 153009827 153010159 + 2 NA Intergenic Intergenic -15877 NM_001184924 114824 Hs.573567 NM_052926 ENSG00000198883 PNMA5 - PNMA family member 5 protein-coding 464-154 chr22 42397303 42397747 + 2 NA intron (NM_145912, intron 4 of 5) intron (NM_145912, intron 4 of 5) -28317 NR_120595 102723775 Hs.335413 NR_120595 ENSG00000229891 LINC01315 C22orf32-1|lnc-C22orf32-1 long intergenic non-protein coding RNA 1315 ncRNA 309-290 chr2 221719576 221719881 + 2 NA Intergenic Intergenic -145526 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 278-45 chr10 115088943 115089103 + 2 NA Intergenic HAL1|LINE|L1 -4342 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 270-68 chr11 130561377 130561641 + 2 NA Intergenic Intergenic -105226 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 380-351 chr6 155499550 155499924 + 2 NA Intergenic Intergenic -15107 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 433-85 chr14 84569638 84570011 + 2 NA Intergenic L1MB4|LINE|L1 -702108 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 281-408 chr7 8510732 8510909 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 77211 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 359-288 chr20 42056567 42056920 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -438366 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 206-214 chr5 106658298 106658433 + 2 NA Intergenic Intergenic 352649 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 186-6 chr1 85432398 85432575 + 2 NA intron (NM_001134445, intron 2 of 6) intron (NM_001134445, intron 2 of 6) -27980 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 413-35 chr10 54172407 54172802 + 2 NA intron (NM_001354411, intron 14 of 34) intron (NM_001354411, intron 14 of 34) -313626 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 321-541 chr8 21275382 21275667 + 2 NA Intergenic Intergenic -22715 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 311-59 chr10 81808864 81809024 + 2 NA Intergenic L1MC1|LINE|L1 -66250 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 254-395 chr7 150704601 150704781 + 2 NA Intergenic L1M3de|LINE|L1 -11866 NM_001303630 100527949 Hs.647079 NM_001199577 ENSG00000281887 GIMAP1-GIMAP5 - GIMAP1-GIMAP5 readthrough protein-coding 408-51 chr10 127521406 127521686 + 2 NA Intergenic Intergenic -27803 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 274-3 chr1 57197781 57198008 + 2 NA intron (NM_001353980, intron 5 of 5) intron (NM_001353980, intron 5 of 5) 225218 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 319-221 chr19 47968119 47968351 + 2 NA intron (NM_001128326, intron 5 of 5) A-rich|Low_complexity|Low_complexity 12553 NR_024219 100170223 Hs.717052 NR_024219 SNAR-C5 - small NF90 (ILF3) associated RNA C5 snRNA 270-389 chr8 101774897 101775136 + 2 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 15953 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 271-133 chr14 57599087 57599280 + 2 NA intron (NM_001306087, intron 1 of 7) intron (NM_001306087, intron 1 of 7) -105326 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 452-278 chr8 132327075 132327397 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 120026 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 328-587 chr8 136495252 136495417 + 2 NA Intergenic AluSp|SINE|Alu -35464 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 125-24 chr18 45068593 45068662 + 2 NA TTS (NM_015559) TTS (NM_015559) -98461 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 296-304 chr3 106843204 106843368 + 2 NA Intergenic Intergenic 397352 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 198-46 chr11 130377629 130377773 + 2 NA intron (NR_148980, intron 2 of 6) L1MC5a|LINE|L1 50908 NM_007037 11095 Hs.271605 NM_007037 ENSG00000134917 ADAMTS8 ADAM-TS8|METH2 ADAM metallopeptidase with thrombospondin type 1 motif 8 protein-coding 391-26 chr1 210863591 210863932 + 2 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 269613 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 391-150 chr18 71111334 71111574 + 2 NA Intergenic Intergenic -460500 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 217-381 chr8 137218468 137218629 + 2 NA Intergenic AluSz|SINE|Alu 195040 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 289-430 chr7 11292035 11292262 + 2 NA Intergenic Intergenic 318276 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 244-309 chr5 129669148 129669319 + 2 NA intron (NM_133638, intron 16 of 22) L1M4|LINE|L1 -78861 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 461-143 chr2 147309976 147310338 + 2 NA Intergenic MIRc|SINE|MIR -534360 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 715-18 chr14 71963607 71964004 + 2 NA intron (NM_001370288, intron 1 of 16) L1MB5|LINE|L1 30278 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 174-45 chr14 90966766 90966909 + 2 NA intron (NM_001322238, intron 1 of 14) intron (NM_001322238, intron 1 of 14) 93287 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 514-80 chr14 28226747 28227113 + 2 NA Intergenic Intergenic 538389 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 367-276 chr3 32927363 32927716 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -24105 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 213-250 chr6 51780567 51780760 + 2 NA intron (NM_138694, intron 53 of 66) L1M5|LINE|L1 158793 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 250-399 chr7 52609900 52610087 + 2 NA Intergenic Intergenic -425640 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 393-164 chr2 79757583 79757931 + 2 NA intron (NM_001282598, intron 3 of 17) MIRb|SINE|MIR -108398 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 312-203 chr18 43886278 43886468 + 2 NA Intergenic Intergenic -608883 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 581-115 chr4 61011114 61011534 + 2 NA Intergenic L1ME2|LINE|L1 88705 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 179-54 chr2 198235572 198235711 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger 139456 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 387-220 chr3 26778616 26778898 + 2 NA Intergenic L1MA1|LINE|L1 84200 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 318-429 chr5 13138382 13138594 + 2 NA Intergenic LOR1b|LTR|ERV1 -105602 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 522-250 chr8 88612913 88613340 + 2 NA Intergenic Intergenic -285643 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 405-333 chr8 127385758 127386039 + 2 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -14501 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 435-5 chr1 56283503 56283799 + 2 NA Intergenic MIRb|SINE|MIR -131312 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 342-132 chr13 86684806 86685091 + 2 NA Intergenic Intergenic -226972 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 155-15 chr1 198263914 198263996 + 2 NA intron (NM_133494, intron 4 of 9) intron (NM_133494, intron 4 of 9) 106957 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 376-107 chr14 70014240 70014515 + 2 NA intron (NM_001034852, intron 10 of 11) L2c|LINE|L2 36244 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 625-87 chr5 128791602 128792068 + 2 NA Intergenic Intergenic -173292 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 349-148 chr13 100191333 100191587 + 2 NA intron (NR_148031, intron 6 of 22) MIR|SINE|MIR 102367 NR_148028 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 356-434 chr6 139950106 139950333 + 2 NA Intergenic L1PA15|LINE|L1 -26100 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 336-431 chr4 132469385 132469712 + 2 NA Intergenic L1MEg|LINE|L1 -121541 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 214-161 chr2 54103592 54103722 + 2 NA intron (NM_001320587, intron 3 of 5) MIRb|SINE|MIR -11958 NM_001320589 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 516-11 chr1 186012311 186012816 + 2 NA intron (NM_031935, intron 30 of 106) Cheshire|DNA|hAT-Charlie 278172 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 172-127 chr7 78849405 78849535 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -159518 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 310-99 chr12 21077081 21077292 + 2 NA intron (NM_001009562, intron 12 of 12) intron (NM_001009562, intron 12 of 12) -54008 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 161-137 chr9 80711337 80711493 + 2 NA Intergenic L1M5|LINE|L1 736392 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 278-373 chr6 86773841 86774043 + 2 NA Intergenic Intergenic -163586 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 487-76 chr13 74592141 74592600 + 2 NA Intergenic Intergenic 39527 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 159-73 chr5 16039298 16039400 + 2 NA Intergenic Intergenic 104167 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 135-61 chr6 86566963 86567094 + 2 NA Intergenic L1MC3|LINE|L1 -370500 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 455-80 chr15 62309233 62309532 + 2 NA Intergenic L1MC4|LINE|L1 -4648 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 593-6 chr1 103844766 103845227 + 2 NA Intergenic Intergenic 95155 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 271-28 chr1 218469759 218469923 + 2 NA intron (NR_031644, intron 2 of 6) ERVL-E-int|LTR|ERVL 27215 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 402-359 chr8 140468572 140468941 + 2 NA Intergenic L1MC4|LINE|L1 -10177 NM_031466 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 339-72 chr10 96593611 96593861 + 2 NA 3' UTR (NM_152309, exon 17 of 17) 3' UTR (NM_152309, exon 17 of 17) -6724 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 201-112 chr2 13962374 13962506 + 2 NA Intergenic L1MA4|LINE|L1 438518 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 353-308 chr22 49360131 49360442 + 2 NA Intergenic Intergenic 183180 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 575-147 chr5 39723754 39724142 + 2 NA Intergenic Intergenic 203517 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 335-466 chr6 62667349 62667656 + 2 NA Intergenic L1MD3|LINE|L1 -381275 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 264-177 chr18 56067050 56067255 + 2 NA intron (NR_148972, intron 3 of 8) intron (NR_148972, intron 3 of 8) 24874 NR_146510 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 490-221 chr5 91551037 91551353 + 2 NA Intergenic L1PB4|LINE|L1 -167878 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 367-224 chr2 147628838 147629125 + 2 NA Intergenic Intergenic -215536 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 267-321 chr5 22914356 22914534 + 2 NA Intergenic Intergenic -61101 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 254-107 chr14 33640501 33640666 + 2 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -68354 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 578-37 chr11 32371259 32371806 + 2 NA Intergenic L1ME2|LINE|L1 28868 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 272-141 chr16 46473786 46473975 + 2 NA intron (NR_026556, intron 16 of 16) intron (NR_026556, intron 16 of 16) 95217 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 825-8 chr13 109472946 109473465 + 2 NA Intergenic Intergenic 72509 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 432-90 chr16 35155630 35155970 + 2 NA Intergenic L1PB3|LINE|L1 14591 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 301-198 chr2 37912372 37912600 + 2 NA Intergenic Intergenic -12801 NM_001322212 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 421-18 chr1 205919311 205919681 + 2 NA intron (NM_052934, intron 18 of 20) intron (NM_052934, intron 18 of 20) -15417 NR_110984 103021296 Hs.613648 NR_110983 SLC26A9-AS1 - SLC26A9 and RAB7B antisense RNA 1 ncRNA 232-32 chr10 57154644 57154796 + 2 NA Intergenic L1M5|LINE|L1 149839 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 165-90 chr4 39836161 39836269 + 2 NA intron (NM_001100399, intron 32 of 32) intron (NM_001100399, intron 32 of 32) 138079 NM_001312646 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 310-496 chr7 123412356 123412560 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 120490 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 489-228 chr6 104426489 104426792 + 2 NA Intergenic L1MC5|LINE|L1 432906 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 209-227 chr4 81873373 81873542 + 2 NA Intergenic L1ME2z|LINE|L1 -401550 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 842-32 chr3 109850727 109851405 + 2 NA Intergenic L1M1|LINE|L1 248238 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 231-101 chr14 82802171 82802323 + 2 NA Intergenic Intergenic 159615 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 450-239 chr5 52383526 52383868 + 2 NA Intergenic MIR|SINE|MIR 375666 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 286-2 chr1 10607739 10607940 + 2 NA intron (NM_004565, intron 4 of 8) L1ME2|LINE|L1 132889 NM_004565 5195 Hs.149983 NM_004565 ENSG00000142655 PEX14 NAPP2|PBD13A|Pex14p|dJ734G22.2 peroxisomal biogenesis factor 14 protein-coding 322-214 chr18 4235559 4235847 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -28899 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 301-325 chr4 90844125 90844346 + 2 NA intron (NM_001145065, intron 8 of 10) (TAGATA)n|Simple_repeat|Simple_repeat 609204 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 360-116 chr14 49265549 49265809 + 2 NA Intergenic L2b|LINE|L2 320701 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 225-178 chr20 32273118 32273281 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -4452 NM_004798 9371 Hs.369670 NM_004798 ENSG00000101350 KIF3B FLA8|HH0048|KLP-11 kinesin family member 3B protein-coding 341-114 chr12 50646751 50647045 + 2 NA intron (NM_173602, intron 3 of 37) intron (NM_173602, intron 3 of 37) -117203 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 195-119 chr2 177810324 177810510 + 2 NA intron (NM_001077197, intron 10 of 20) L2c|LINE|L2 78339 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 315-504 chr9 18188520 18188751 + 2 NA Intergenic Intergenic -285518 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 521-250 chr8 51799512 51799959 + 2 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 9710 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 371-8 chr1 73022120 73022353 + 2 NA Intergenic L1ME4c|LINE|L1 -283934 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 303-187 chr19 36451153 36451363 + 2 NA intron (NM_001145345, intron 4 of 4) intron (NM_001145345, intron 4 of 4) 30084 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 347-8 chr1 45416962 45417170 + 2 NA intron (NM_007170, intron 3 of 10) AluSc8|SINE|Alu 74097 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 374-78 chr12 122685951 122686188 + 2 NA Intergenic Intergenic 9930 NR_162094 113218484 NR_162094 MIR9902-1 - microRNA 9902-1 ncRNA 259-356 chr6 138203924 138204122 + 2 NA intron (NM_020340, intron 2 of 33) intron (NM_020340, intron 2 of 33) 14467 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 287-165 chr17 71149781 71150029 + 2 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 52274 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 246-18 chr1 179717521 179717714 + 2 NA Intergenic Intergenic -10159 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 339-573 chr8 83385046 83385303 + 2 NA Intergenic L1MA8|LINE|L1 -18584 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 324-315 chr20 47426989 47427247 + 2 NA Intergenic LTR8A|LTR|ERV1 -14974 NR_146496 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 340-476 chr6 56960080 56960391 + 2 NA intron (NM_001318539, intron 1 of 3) intron (NM_001318539, intron 1 of 3) 5128 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 319-149 chr14 78370742 78370985 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -32856 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 177-47 chr14 28026298 28026448 + 2 NA Intergenic MIR|SINE|MIR -353152 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 710-83 chr6 91245476 91245938 + 2 NA Intergenic LTR78B|LTR|ERV1 -275953 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 314-606 chr9 79502644 79502887 + 2 NA Intergenic Intergenic -69008 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 361-89 chr11 114542696 114542914 + 2 NA intron (NM_152315, intron 2 of 5) L1M8|LINE|L1 17076 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 376-422 chr9 28026374 28026640 + 2 NA intron (NM_152570, intron 5 of 6) MER5A|DNA|hAT-Charlie -452641 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 416-181 chr2 134231134 134231458 + 2 NA intron (NM_001371457, intron 1 of 16) L1MB8|LINE|L1 -22776 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 298-240 chr2 179637874 179638156 + 2 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 22179 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 782-74 chr9 22080987 22081487 + 2 NA intron (NR_003529, intron 12 of 18) intron (NR_003529, intron 12 of 18) -71924 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 206-216 chr5 118820866 118821058 + 2 NA Intergenic Intergenic -153624 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 197-110 chr2 167006555 167006748 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 118164 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 583-134 chr5 30284541 30285023 + 2 NA Intergenic Intergenic 404222 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 203-78 chr15 70676366 70676534 + 2 NA intron (NM_018003, intron 13 of 18) MIRb|SINE|MIR 25832 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 422-120 chr18 1934631 1934974 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -575173 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 393-269 chr5 19170860 19171184 + 2 NA Intergenic L3|LINE|CR1 715250 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 351-145 chr15 57755428 57755646 + 2 NA Intergenic Intergenic 48823 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 409-181 chr21 20166747 20167014 + 2 NA Intergenic Intergenic 91805 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 249-106 chr13 90125327 90125472 + 2 NA Intergenic Intergenic -5682 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 114-40 chr3 98105599 98105659 + 2 NA Intergenic Intergenic 18456 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 281-251 chr2 240617229 240617408 + 2 NA 5' UTR (NM_001195382, exon 4 of 6) 5' UTR (NM_001195382, exon 4 of 6) -7927 NM_005301 2859 Hs.112218 NM_005301 ENSG00000178623 GPR35 - G protein-coupled receptor 35 protein-coding 319-410 chr5 61049088 61049312 + 2 NA intron (NM_174889, intron 1 of 3) intron (NM_174889, intron 1 of 3) 103995 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 260-117 chr13 54748419 54748609 + 2 NA Intergenic Intergenic -425940 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 319-354 chr3 188073035 188073272 + 2 NA Intergenic Intergenic -80745 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 267-426 chr8 101055437 101055596 + 2 NA intron (NR_033962, intron 2 of 2) L1ME3F|LINE|L1 3462 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 234-306 chr5 30189276 30189499 + 2 NA Intergenic Intergenic 308827 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 516-219 chr5 163928077 163928377 + 2 NA Intergenic Intergenic 422608 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 184-35 chr11 41132287 41132393 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 327296 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 286-66 chr11 37328552 37328732 + 2 NA Intergenic Intergenic -609959 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 1001-16 chr5 6891047 6891857 + 2 NA Intergenic Intergenic -63531 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 631-134 chrX 55549183 55549557 + 2 NA Intergenic Intergenic -60172 NM_201286 158880 Hs.40061 NM_201286 ENSG00000247746 USP51 - ubiquitin specific peptidase 51 protein-coding 398-160 chr2 49947068 49947426 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) 26956 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 621-2 chr1 76064304 76064737 + 2 NA Intergenic Intergenic -10226 NM_001349109 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 702-95 chr7 77819755 77820262 + 2 NA intron (NM_001366088, intron 1 of 11) AluSp|SINE|Alu -20120 NM_020432 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 330-170 chr15 60604215 60604462 + 2 NA intron (NR_120342, intron 5 of 5) Tigger17a|DNA|TcMar-Tigger -11812 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 297-221 chr2 115475780 115475986 + 2 NA intron (NM_001321912, intron 4 of 25) MSTA-int|LTR|ERVL-MaLR 132068 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 153-99 chr8 136223167 136223266 + 2 NA Intergenic L1M4|LINE|L1 -307582 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 258-111 chr13 92310273 92310507 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 41817 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 611-31 chr12 72969281 72969689 + 2 NA Intergenic Intergenic -189705 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 378-329 chr5 8830041 8830286 + 2 NA Intergenic L1PB3|LINE|L1 -9569 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 389-59 chr11 34377929 34378170 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -20039 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 402-236 chr4 73846807 73847076 + 2 NA Intergenic Intergenic -6355 NM_002620 5197 Hs.72933 NM_002620 ENSG00000109272 PF4V1 CXCL4L1|CXCL4V1|PF4-ALT|PF4A|SCYB4V1 platelet factor 4 variant 1 protein-coding 238-434 chrX 111370950 111371089 + 2 NA intron (NM_178152, intron 3 of 6) L1ME2z|LINE|L1 40127 NM_000555 1641 Hs.34780 NM_000555 ENSG00000077279 DCX DBCN|DC|LISX|SCLH|XLIS doublecortin protein-coding 246-301 chr4 97066517 97066723 + 2 NA Intergenic L2b|LINE|L2 -300306 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 239-375 chr7 50317452 50317620 + 2 NA intron (NM_001291847, intron 1 of 4) intron (NM_001291847, intron 1 of 4) -1512 NM_001220768 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 406-112 chr17 69651700 69652089 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 57907 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 346-327 chr3 134899743 134900020 + 2 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 104621 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 516-191 chr4 64858545 64858891 + 2 NA Intergenic Intergenic 145782 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 465-158 chr20 53409145 53409483 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -143456 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 390-278 chr5 2527092 2527449 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -185321 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 516-86 chr15 95135557 95136040 + 2 NA Intergenic Intergenic 191302 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 414-359 chr9 117437196 117437500 + 2 NA Intergenic Intergenic -22291 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 418-221 chr5 90660743 90661081 + 2 NA intron (NR_003149, intron 21 of 89) intron (NR_003149, intron 21 of 89) 102115 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 378-48 chr10 20446438 20446676 + 2 NA Intergenic Intergenic -105413 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 446-194 chr3 103340138 103340437 + 2 NA Intergenic Intergenic 183829 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 394-92 chr12 129891779 129891990 + 2 NA intron (NM_133448, intron 1 of 8) L1ME4a|LINE|L1 12141 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 160-26 chr13 109450572 109450668 + 2 NA Intergenic L1ME4b|LINE|L1 49924 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 298-286 chr3 16097099 16097314 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -77474 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 185-37 chr11 81165193 81165320 + 2 NA Intergenic Intergenic -402453 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 308-498 chr8 92462594 92462790 + 2 NA Intergenic Intergenic 192802 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 221-296 chr8 71200346 71200514 + 2 NA intron (NM_001370336, intron 17 of 17) intron (NM_001370336, intron 17 of 17) 156276 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 776-30 chr20 55054179 55054596 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -368656 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 330-268 chr2 79091022 79091329 + 2 NA Intergenic Intergenic -3182 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 198-137 chr2 157455111 157455256 + 2 NA Intergenic MIR3|SINE|MIR -11094 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 196-71 chr14 51953276 51953443 + 2 NA intron (NM_001243773, intron 3 of 3) intron (NM_001243773, intron 3 of 3) -34788 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 626-76 chr2 189351003 189351492 + 2 NA Intergenic L1ME4b|LINE|L1 -90186 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 438-189 chr4 32512452 32512839 + 2 NA Intergenic Intergenic 161607 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 345-134 chr13 54676011 54676288 + 2 NA Intergenic Intergenic -364101 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 339-494 chr6 81392694 81392971 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 359849 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 276-252 chr2 236637502 236637657 + 2 NA Intergenic Intergenic 67754 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 316-554 chr8 94115773 94116016 + 2 NA Intergenic Intergenic 92661 NM_004063 1015 Hs.591853 NM_004063 ENSG00000079112 CDH17 CDH16|HPT-1|HPT1 cadherin 17 protein-coding 455-214 chr5 28331002 28331341 + 2 NA Intergenic L1PA16|LINE|L1 -43506 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 493-206 chr3 96994844 96995214 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 180435 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 455-200 chr4 173017182 173017604 + 2 NA intron (NM_001034845, intron 11 of 12) intron (NM_001034845, intron 11 of 12) -151418 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 262-271 chr3 23175151 23175358 + 2 NA Intergenic Intergenic 27324 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 260-345 chr5 34927189 34927352 + 2 NA Intergenic Intergenic -2289 NM_001012339 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 130-10 chr10 58146688 58146763 + 2 NA Intergenic MIR|SINE|MIR 121169 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 342-545 chr9 22057325 22057518 + 2 NA intron (NR_047537, intron 4 of 5) intron (NR_047537, intron 4 of 5) -48108 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 386-169 chr2 59805355 59805588 + 2 NA Intergenic Intergenic 577565 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 589-118 chr5 41101468 41102027 + 2 NA Intergenic L1M5|LINE|L1 -30405 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 292-477 chrX 75172010 75172186 + 2 NA intron (NM_001363821, intron 3 of 9) L1PB1|LINE|L1 15729 NM_001363821 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 127-48 chr2 82972448 82972537 + 2 NA Intergenic L1M3|LINE|L1 115689 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 216-238 chr3 185888074 185888268 + 2 NA Intergenic AluSx1|SINE|Alu 49843 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 402-288 chr5 153934981 153935216 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -36111 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 389-195 chr2 218973589 218973954 + 2 NA Intergenic MIR|SINE|MIR -2513 NR_024385 151300 Hs.420716 NR_015390 LINC00608 - long intergenic non-protein coding RNA 608 ncRNA 537-127 chr2 129641296 129641692 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 235997 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 378-251 chr2 200061607 200061826 + 2 NA Intergenic L1PA15|LINE|L1 -106225 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 504-171 chr3 80229372 80229714 + 2 NA Intergenic Intergenic -461545 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 379-108 chr15 92605974 92606197 + 2 NA Intergenic Intergenic -33822 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 335-500 chr7 42775835 42776041 + 2 NA Intergenic Intergenic -69491 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 402-364 chr9 31133485 31133710 + 2 NA Intergenic L1PB1|LINE|L1 247893 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 304-142 chr14 51934253 51934450 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -15780 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 343-38 chr1 237454754 237454945 + 2 NA intron (NM_001035, intron 15 of 104) intron (NM_001035, intron 15 of 104) -16270 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 285-390 chr7 68283876 68284055 + 2 NA Intergenic L1MA6|LINE|L1 263712 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 240-51 chr10 59321564 59321734 + 2 NA intron (NM_001347852, intron 4 of 12) intron (NM_001347852, intron 4 of 12) 40900 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 221-134 chr19 44444425 44444613 + 2 NA intron (NM_001278510, intron 2 of 5) intron (NM_001278510, intron 2 of 5) 3953 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 280-89 chr12 39572065 39572292 + 2 NA intron (NM_005164, intron 9 of 9) intron (NM_005164, intron 9 of 9) 47625 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 272-210 chr2 120531597 120531836 + 2 NA Intergenic Intergenic -65367 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 419-22 chr1 194529070 194529451 + 2 NA Intergenic Intergenic 1224515 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 242-164 chr2 28305069 28305267 + 2 NA intron (NM_001261840, intron 11 of 11) L1ME2|LINE|L1 5291 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 295-167 chr16 57673906 57674078 + 2 NA intron (NM_001308360, intron 2 of 10) L2c|LINE|L2 5686 NM_170776 222487 Hs.383403 NM_170776 ENSG00000182885 ADGRG3 GPR97|PB99|PGR26 adhesion G protein-coupled receptor G3 protein-coding 443-315 chrX 93387051 93387477 + 2 NA Intergenic Intergenic 286314 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 351-28 chr1 221948523 221948846 + 2 NA intron (NR_149057, intron 1 of 3) intron (NR_149057, intron 1 of 3) -17726 NR_149071 110806276 NR_149071 LINC02474 - long intergenic non-protein coding RNA 2474 ncRNA 205-23 chr1 240344414 240344581 + 2 NA intron (NM_001348094, intron 11 of 14) intron (NM_001348094, intron 11 of 14) 252614 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 362-35 chr1 214114844 214115125 + 2 NA Intergenic L2a|LINE|L2 126451 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 287-55 chr10 58089859 58090094 + 2 NA Intergenic Intergenic 177918 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 325-330 chr22 48470517 48470750 + 2 NA Intergenic Intergenic -18920 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 361-358 chr5 45056458 45056816 + 2 NA Intergenic Intergenic 247690 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 214-126 chr17 40580091 40580273 + 2 NA Intergenic L1ME3C|LINE|L1 -14710 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 350-303 chr3 34837374 34837705 + 2 NA Intergenic MER4D|LTR|ERV1 556484 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 274-144 chr15 79608867 79609088 + 2 NA Intergenic Intergenic 176461 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 304-436 chr5 145260407 145260626 + 2 NA Intergenic L1ME2|LINE|L1 574826 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 156-18 chr11 23778309 23778454 + 2 NA Intergenic Intergenic -359191 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 188-97 chr2 66742986 66743121 + 2 NA Intergenic Intergenic -39826 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 316-36 chr1 189643312 189643601 + 2 NA Intergenic Intergenic 832554 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 723-38 chr2 55172541 55172916 + 2 NA non-coding (NR_148538, exon 6 of 6) non-coding (NR_148538, exon 6 of 6) -34897 NM_001321904 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 439-101 chr16 9793559 9793932 + 2 NA intron (NM_001134408, intron 11 of 13) intron (NM_001134408, intron 11 of 13) -338240 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 245-282 chr5 62963814 62964015 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 385095 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 275-139 chr16 85814874 85815046 + 2 NA Intergenic Intergenic 15265 NM_001318797 1327 Hs.433419 NM_001861 ENSG00000131143 COX4I1 COX IV-1|COX4|COX4-1|COXIV|COXIV-1 cytochrome c oxidase subunit 4I1 protein-coding 361-206 chr2 24544385 24544576 + 2 NA intron (NM_001362952, intron 1 of 23) AluJo|SINE|Alu -39997 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 633-105 chr6 100643497 100644008 + 2 NA intron (NM_006828, intron 23 of 41) Tigger3a|DNA|TcMar-Tigger -180077 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 383-361 chr7 69452176 69452500 + 2 NA Intergenic AluJb|SINE|Alu 145286 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 354-112 chr12 94110111 94110292 + 2 NA Intergenic MER113A|DNA|hAT-Charlie -38376 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 550-4 chr1 29842134 29842543 + 2 NA Intergenic L1MEd|LINE|L1 195274 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 607-107 chr4 79696933 79697368 + 2 NA Intergenic L1PBa|LINE|L1 -130321 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 489-177 chr3 110615509 110615902 + 2 NA Intergenic LTR33A|LTR|ERVL 454254 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 508-229 chr8 14278834 14279262 + 2 NA intron (NM_001322879, intron 2 of 6) intron (NM_001322879, intron 2 of 6) 574462 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 367-302 chr3 180006397 180006601 + 2 NA intron (NM_016559, intron 1 of 14) intron (NM_016559, intron 1 of 14) 30438 NM_001349401 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 204-215 chr4 52953153 52953282 + 2 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 90900 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 333-91 chr11 77431209 77431538 + 2 NA intron (NM_001128620, intron 1 of 15) MIRc|SINE|MIR 42690 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 225-403 chrX 26496182 26496384 + 2 NA Intergenic Intergenic -62054 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 356-231 chr2 40813162 40813480 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -300886 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 186-176 chr9 87398996 87399129 + 2 NA Intergenic LTR9|LTR|ERV1 -98166 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 300-114 chr14 69986580 69986779 + 2 NA intron (NM_001034852, intron 5 of 11) intron (NM_001034852, intron 5 of 11) 8546 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 567-160 chr6 73977372 73977770 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -91880 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 249-346 chr5 144274429 144274585 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 69116 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 618-138 chr8 138614020 138614418 + 2 NA intron (NM_152888, intron 55 of 64) intron (NM_152888, intron 55 of 64) -116489 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 328-120 chr12 127410351 127410597 + 2 NA Intergenic Intergenic -70402 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 531-99 chr2 10819480 10819857 + 2 NA intron (NM_001282705, intron 1 of 13) LTR65|LTR|ERV1 -6829 NM_001282707 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 339-88 chr11 21396637 21396958 + 2 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 727211 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 274-240 chr20 48217464 48217728 + 2 NA Intergenic MIRb|SINE|MIR -142315 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 241-278 chr4 113733680 113733860 + 2 NA intron (NM_001321585, intron 2 of 19) intron (NM_001321585, intron 2 of 19) 27968 NM_001321572 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 210-133 chr2 96332254 96332399 + 2 NA Intergenic Intergenic -3440 NM_001281712 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 194-7 chr1 81664734 81664891 + 2 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -34958 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 497-105 chr18 74319698 74320061 + 2 NA intron (NM_001174123, intron 2 of 13) intron (NM_001174123, intron 2 of 13) 4040 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 482-220 chr6 40072903 40073307 + 2 NA Intergenic L1PB1|LINE|L1 -138643 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 371-363 chr7 48896142 48896508 + 2 NA Intergenic Intergenic -28222 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 255-207 chr2 134687734 134687893 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 31187 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 279-142 chr17 74621418 74621605 + 2 NA intron (NM_181449, intron 1 of 3) intron (NM_181449, intron 1 of 3) 2227 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 166-124 chr9 114682800 114682913 + 2 NA promoter-TSS (NM_001199233) promoter-TSS (NM_001199233) -767 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 452-255 chr7 95739376 95739686 + 2 NA Intergenic L1PA16|LINE|L1 -32975 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 326-183 chr16 13959932 13960234 + 2 NA Intergenic Intergenic 39926 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 231-258 chr4 72918276 72918490 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 151333 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 512-14 chr1 185623975 185624347 + 2 NA intron (NR_110793, intron 2 of 3) LTR9A1|LTR|ERV1 4327 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 345-342 chr3 20218073 20218410 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -32008 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 346-147 chr14 88710675 88710938 + 2 NA intron (NM_183387, intron 10 of 42) intron (NM_183387, intron 10 of 42) 82147 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 313-458 chr5 171760690 171760863 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -25096 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 182-172 chr8 119695266 119695423 + 2 NA Intergenic Intergenic -21954 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 166-114 chr7 147946763 147946860 + 2 NA intron (NM_014141, intron 13 of 22) LTR48|LTR|ERV1 275132 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 310-79 chr11 69256915 69257187 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -37104 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 285-445 chr9 11216778 11217050 + 2 NA Intergenic L1MA3|LINE|L1 603708 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 318-307 chr2 218179903 218180135 + 2 NA Intergenic MER45C|DNA|hAT-Tip100 -13057 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 309-410 chr4 127949992 127950250 + 2 NA intron (NM_001363520, intron 2 of 9) intron (NM_001363520, intron 2 of 9) 15052 NM_001363521 256471 Hs.480701 NM_152778 ENSG00000164073 MFSD8 CCMD|CLN7 major facilitator superfamily domain containing 8 protein-coding 618-75 chr21 14720883 14721342 + 2 NA Intergenic Intergenic -78005 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 342-161 chr15 58019714 58019929 + 2 NA intron (NM_170696, intron 1 of 11) intron (NM_170696, intron 1 of 11) -5798 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 267-350 chr5 137713528 137713693 + 2 NA intron (NM_017415, intron 2 of 14) L1MB7|LINE|L1 -7183 NM_001257195 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 581-114 chr4 57742125 57742506 + 2 NA Intergenic Intergenic 316443 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 217-36 chr10 33916507 33916676 + 2 NA Intergenic Intergenic -143911 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 158-109 chr7 116158234 116158340 + 2 NA Intergenic Intergenic -52252 NM_015641 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 232-42 chr10 105368552 105368744 + 2 NA Intergenic Intergenic 451685 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 473-104 chr16 72047945 72048232 + 2 NA Intergenic L1ME3|LINE|L1 -6417 NM_005143 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 248-359 chr6 150559933 150560095 + 2 NA Intergenic MER54A|LTR|ERVL -39871 NR_138139 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 558-96 chr2 35227759 35228228 + 2 NA Intergenic Intergenic -243412 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 413-177 chr21 29614553 29614916 + 2 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 18694 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 326-89 chr11 6138122 6138441 + 2 NA Intergenic L1M4c|LINE|L1 30597 NM_001005181 196335 Hs.632154 NM_001005181 ENSG00000180919 OR56B4 OR11-67 olfactory receptor family 56 subfamily B member 4 protein-coding 500-312 chr8 137009348 137009730 + 2 NA Intergenic Intergenic 404049 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 187-109 chr3 83861433 83861565 + 2 NA Intergenic Intergenic 1008076 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 311-471 chr7 45293645 45293872 + 2 NA Intergenic MLT2D|LTR|ERVL 135967 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 301-288 chr3 121047616 121047907 + 2 NA intron (NR_145517, intron 5 of 8) L1PA14|LINE|L1 -1879 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 186-113 chr3 117664609 117664769 + 2 NA Intergenic L2|LINE|L2 26236 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 217-229 chr3 95833167 95833298 + 2 NA Intergenic Intergenic -150039 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 470-83 chr15 68856668 68857054 + 2 NA Intergenic L1MDa|LINE|L1 -35966 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 332-575 chr9 104628090 104628292 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -9987 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 473-58 chr12 46077333 46077616 + 2 NA Intergenic Intergenic -86900 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 378-211 chr2 12702568 12702928 + 2 NA Intergenic Intergenic -14124 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 204-185 chr22 34781238 34781433 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 216581 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 253-27 chr1 194151354 194151538 + 2 NA Intergenic L1MEg|LINE|L1 846701 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 385-191 chr2 168420855 168421060 + 2 NA Intergenic MER41B|LTR|ERV1 -35315 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 562-110 chr2 107467595 107467986 + 2 NA Intergenic Intergenic -61629 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 153-48 chr2 16096183 16096331 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 45830 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 468-147 chr2 82144186 82144452 + 2 NA Intergenic AluSz6|SINE|Alu -677373 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 716-11 chr10 32721318 32721721 + 2 NA intron (NM_001321115, intron 26 of 43) MER76-int|LTR|ERVL 179953 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 166-5 chr10 22983302 22983449 + 2 NA intron (NM_001282745, intron 10 of 18) intron (NM_001282745, intron 10 of 18) 55322 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 440-98 chr18 59921560 59921918 + 2 NA Intergenic MIRc|SINE|MIR 21743 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 193-120 chr2 179058774 179058929 + 2 NA Intergenic Intergenic -8714 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 277-19 chr1 113685999 113686224 + 2 NA TTS (NM_152900) TTS (NM_152900) 73044 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 514-215 chr5 4210246 4210656 + 2 NA Intergenic L1MC3|LINE|L1 -563030 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 174-154 chr9 36010225 36010335 + 2 NA Intergenic Intergenic -26633 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 134-51 chr22 24092328 24092427 + 2 NA intron (NM_012295, intron 24 of 36) MIRc|SINE|MIR 81007 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 417-145 chr2 103736085 103736488 + 2 NA Intergenic L1MA4A|LINE|L1 672046 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 549-37 chr11 65981817 65982279 + 2 NA Intergenic Intergenic -20031 NM_001143985 8815 Hs.433759 NM_003860 ENSG00000175334 BANF1 BAF|BCRP1|D14S1460|NGPS barrier to autointegration factor 1 protein-coding 685-68 chr3 113375220 113375868 + 2 NA intron (NM_001164496, intron 17 of 34) L1MEg|LINE|L1 -28454 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 600-88 chr3 178516571 178517037 + 2 NA Intergenic Intergenic -19632 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 403-94 chr14 49220993 49221299 + 2 NA Intergenic L2a|LINE|L2 365234 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 327-146 chr14 46507409 46507650 + 2 NA Intergenic AluSz|SINE|Alu 36170 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 670-47 chr17 71194549 71195044 + 2 NA intron (NR_104152, intron 1 of 3) LTR33|LTR|ERVL 7383 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 376-413 chr8 127349113 127349437 + 2 NA intron (NR_117099, intron 3 of 3) MLT1D|LTR|ERVL-MaLR -51124 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 311-552 chrX 10553472 10553670 + 2 NA intron (NM_033289, intron 2 of 9) intron (NM_033289, intron 2 of 9) 14032 NM_001193281 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 236-36 chr10 33463858 33464009 + 2 NA Intergenic Intergenic -129028 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 477-246 chr6 122095266 122095740 + 2 NA Intergenic Intergenic -304048 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 125-53 chr5 24570593 24570667 + 2 NA intron (NM_001362460, intron 2 of 9) intron (NM_001362460, intron 2 of 9) 74348 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 474-143 chr2 108082681 108083148 + 2 NA Intergenic Intergenic -30159 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 363-275 chr22 33462610 33462828 + 2 NA intron (NM_133642, intron 6 of 14) AluSg|SINE|Alu -26050 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 390-30 chr10 23920477 23920767 + 2 NA intron (NM_001098500, intron 1 of 18) L3|LINE|CR1 225895 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 334-245 chr2 12390297 12390549 + 2 NA intron (NR_110196, intron 4 of 5) L2|LINE|L2 191293 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 255-28 chr10 52430660 52430845 + 2 NA Intergenic Intergenic 24520 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 178-159 chr9 94717535 94717661 + 2 NA Intergenic Intergenic -9071 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 274-276 chr3 194016711 194016952 + 2 NA intron (NR_136179, intron 1 of 2) MER33|DNA|hAT-Charlie -13172 NR_033944 647323 Hs.652830 NR_033944 ENSG00000214146 LINC02026 - long intergenic non-protein coding RNA 2026 ncRNA 258-235 chr20 54941193 54941360 + 2 NA Intergenic Intergenic 465683 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 544-116 chr2 79531186 79531539 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 8179 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 257-259 chr3 5423337 5423550 + 2 NA Intergenic Intergenic -173188 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 230-48 chr10 104869227 104869401 + 2 NA intron (NM_014978, intron 2 of 26) MLT2B1|LTR|ERVL -203098 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 295-24 chr1 177667814 177668004 + 2 NA Intergenic MIRb|SINE|MIR -32615 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 479-28 chr10 116084991 116085409 + 2 NA intron (NM_145793, intron 7 of 8) intron (NM_145793, intron 7 of 8) 109589 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 195-105 chr2 75902804 75902979 + 2 NA Intergenic HAL1|LINE|L1 -191976 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 502-7 chr1 66630095 66630450 + 2 NA intron (NM_001350218, intron 2 of 22) intron (NM_001350218, intron 2 of 22) 1832 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 444-184 chr5 763616 763970 + 2 NA intron (NM_001351303, intron 1 of 10) L1MC5a|LINE|L1 3126 NM_001351303 653082 NM_001351303 ENSG00000206077 ZDHHC11B DHHC-11B zinc finger DHHC-type containing 11B protein-coding 472-89 chr14 67922132 67922568 + 2 NA intron (NM_133509, intron 7 of 10) LTR78B|LTR|ERV1 98758 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 354-107 chr12 78228442 78228630 + 2 NA Intergenic AluJr|SINE|Alu 131210 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 352-360 chr4 56623818 56624025 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR 32601 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 232-173 chr2 81448880 81449036 + 2 NA Intergenic Intergenic 17988 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 462-120 chr18 71515293 71515611 + 2 NA Intergenic L1MEg|LINE|L1 63504 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 212-284 chr6 93829984 93830135 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 111756 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 420-24 chr1 223342627 223342916 + 2 NA intron (NM_017982, intron 2 of 8) L1ME4a|LINE|L1 21405 NM_001037175 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 366-248 chr20 9131409 9131745 + 2 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 62523 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 407-168 chr20 42175118 42175380 + 2 NA intron (NM_133170, intron 17 of 31) L2b|LINE|L2 -510234 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 617-74 chr2 220980434 220980928 + 2 NA Intergenic Intergenic 591623 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 348-178 chr16 82383573 82383817 + 2 NA Intergenic Intergenic -213471 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 392-8 chr1 147682787 147683003 + 2 NA Intergenic L1MA8|LINE|L1 -12371 NR_136636 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 357-307 chr4 38302108 38302371 + 2 NA Intergenic MER39|LTR|ERV1 -64675 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 321-564 chr8 96016806 96016981 + 2 NA Intergenic Intergenic -68545 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 515-224 chr5 167647945 167648312 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 74469 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 304-252 chr2 60195033 60195321 + 2 NA Intergenic L1MC3|LINE|L1 187859 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 235-63 chr11 41009073 41009261 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 450469 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 256-282 chr4 18917098 18917315 + 2 NA Intergenic L1ME1|LINE|L1 -895331 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 296-196 chr18 33821723 33821910 + 2 NA Intergenic Intergenic 226796 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 133-87 chr9 137835675 137835796 + 2 NA 3' UTR (NM_024757, exon 27 of 27) 3' UTR (NM_024757, exon 27 of 27) -2684 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 295-43 chr10 33662599 33662791 + 2 NA Intergenic Intergenic 109985 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 624-57 chr2 30703672 30704171 + 2 NA Intergenic Intergenic 103525 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 408-199 chr22 35350236 35350572 + 2 NA Intergenic MIR|SINE|MIR -13605 NR_106717 102464824 NR_106717 ENSG00000274280 MIR6069 hsa-mir-6069 microRNA 6069 ncRNA 308-92 chr11 116363619 116363776 + 2 NA Intergenic Intergenic -275725 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 458-66 chr14 40874089 40874519 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -80407 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 394-145 chr18 69138048 69138364 + 2 NA Intergenic Intergenic -262682 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 245-90 chr12 9068096 9068261 + 2 NA TTS (NR_026971) TTS (NR_026971) 3001 NR_137425 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 361-152 chr15 35643014 35643312 + 2 NA intron (NR_038251, intron 1 of 2) L1PA13|LINE|L1 96968 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 277-347 chr6 48215904 48216103 + 2 NA Intergenic L1MEc|LINE|L1 -147314 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 390-179 chr2 57362850 57363110 + 2 NA Intergenic L1MEf|LINE|L1 -544671 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 258-201 chr2 126943125 126943268 + 2 NA Intergenic L3|LINE|CR1 44306 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 512-90 chr15 92671423 92671775 + 2 NA Intergenic Intergenic -15824 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 344-166 chr16 3833418 3833702 + 2 NA intron (NM_004380, intron 2 of 30) L1MD3|LINE|L1 46560 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 534-277 chr9 113826773 113827140 + 2 NA Intergenic L1MDa|LINE|L1 -49326 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 430-335 chr9 82546502 82546802 + 2 NA Intergenic Intergenic 516490 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 599-51 chr18 74277107 74277565 + 2 NA intron (NM_001190807, intron 1 of 3) intron (NM_001190807, intron 1 of 3) 14627 NM_001190807 1528 Hs.465413 NM_001914 ENSG00000166347 CYB5A CYB5|MCB5|METAG cytochrome b5 type A protein-coding 817-17 chr15 87333331 87333966 + 2 NA Intergenic MER21C|LTR|ERVL -243281 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 311-470 chr7 42226516 42226799 + 2 NA intron (NM_000168, intron 1 of 14) intron (NM_000168, intron 1 of 14) 10552 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 302-214 chr2 77486129 77486353 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 36135 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 186-40 chr12 114772947 114773099 + 2 NA Intergenic Intergenic -88848 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 305-376 chr4 38048797 38049037 + 2 NA intron (NM_001253912, intron 10 of 20) intron (NM_001253912, intron 10 of 20) -61264 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 345-158 chr14 78399254 78399459 + 2 NA intron (NR_073547, intron 4 of 20) L1MD1|LINE|L1 -4363 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 254-405 chr8 63368007 63368212 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -97740 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 207-88 chr14 96964088 96964214 + 2 NA Intergenic Intergenic 20572 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 418-107 chr2 13032898 13033254 + 2 NA Intergenic L1ME2|LINE|L1 -26063 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 222-355 chr7 147005432 147005599 + 2 NA intron (NM_014141, intron 2 of 22) MER34C_|LTR|ERV1 92094 NR_110829 101928700 Hs.571218 NR_110829 ENSG00000236795 LOC101928700 - uncharacterized LOC101928700 ncRNA 264-433 chr8 135124470 135124666 + 2 NA Intergenic Intergenic -109563 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 313-417 chr5 11474186 11474344 + 2 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 114652 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 364-340 chr5 44385497 44385704 + 2 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -3132 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 505-271 chr6 88122693 88123137 + 2 NA Intergenic LTR8|LTR|ERV1 22422 NM_033181 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 341-544 chr8 133823070 133823245 + 2 NA Intergenic Intergenic -45805 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 508-177 chr4 169354229 169354651 + 2 NA Intergenic Intergenic -83484 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 782-9 chr11 47880579 47881170 + 2 NA Intergenic Intergenic -32330 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 419-282 chr8 10177044 10177392 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 81567 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 487-79 chr14 25940409 25940832 + 2 NA Intergenic Intergenic 612810 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 397-312 chr7 108969472 108969719 + 2 NA Intergenic Intergenic -85008 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 358-300 chr3 100072704 100072963 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 41680 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 509-83 chr16 13042357 13042739 + 2 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 140950 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 194-197 chr7 40909503 40909640 + 2 NA Intergenic Intergenic 70368 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 256-155 chr16 63807119 63807335 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 1314836 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 620-31 chr13 92399761 92400183 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -47765 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 584 chr1 11902137 11902615 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -5778 NR_002754 26829 NR_002754 ENSG00000199347 RNU5E-1 RNU5E|U5E RNA, U5E small nuclear 1 snRNA 310-453 chr6 98345211 98345509 + 2 NA Intergenic Intergenic 320829 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 727-83 chr8 83422896 83423330 + 2 NA Intergenic HERVL74-int|LTR|ERVL 19355 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 285-300 chr4 30502528 30502759 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -217726 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 213-43 chr10 70739724 70739886 + 2 NA intron (NM_080722, intron 11 of 21) L3|LINE|CR1 42768 NR_134534 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 141-75 chr5 148925829 148925926 + 2 NA Intergenic Intergenic 99284 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 117-19 chr2 78208495 78208602 + 2 NA intron (NR_110288, intron 1 of 3) L1PA17|LINE|L1 82183 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 238-221 chr22 22875185 22875371 + 2 NA Intergenic Intergenic -10989 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 273-189 chr18 66615621 66615846 + 2 NA Intergenic Intergenic -11643 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 394-41 chr10 49358841 49359158 + 2 NA Intergenic L1MA4|LINE|L1 37090 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 303-71 chr11 80742329 80742515 + 2 NA Intergenic Intergenic 20381 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 442-51 chr12 20556959 20557351 + 2 NA intron (NM_000921, intron 2 of 15) intron (NM_000921, intron 2 of 15) -14709 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 432-268 chr7 42711668 42711968 + 2 NA Intergenic MIRb|SINE|MIR -5371 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 339-428 chr4 141711424 141711692 + 2 NA intron (NM_172175, intron 3 of 9) L2a|LINE|L2 74975 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 386-160 chr2 8059351 8059645 + 2 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -82684 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 329-510 chr6 140964479 140964762 + 2 NA Intergenic Intergenic 280806 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 315-94 chr11 123888946 123889196 + 2 NA Intergenic L1M5|LINE|L1 -3401 NM_001363605 338661 Hs.98377 NM_001013743 ENSG00000204300 TMEM225 PMP22CD|PPP1R154|SPATA47 transmembrane protein 225 protein-coding 309-141 chr14 38657347 38657627 + 2 NA Intergenic Intergenic -225109 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 323-404 chr5 26451167 26451357 + 2 NA Intergenic Intergenic 587324 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 389-354 chr8 14627191 14627538 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 226146 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 197-192 chr7 41225956 41226115 + 2 NA Intergenic LTR54|LTR|ERV1 124431 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 243-157 chr16 78138320 78138508 + 2 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 38760 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 489-29 chr10 66420186 66420633 + 2 NA intron (NM_001127384, intron 11 of 17) L1MA4A|LINE|L1 -505627 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 684-111 chr7 7403670 7404073 + 2 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 132002 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 316-175 chr14 78495413 78495582 + 2 NA intron (NM_004796, intron 1 of 16) MIRb|SINE|MIR 91778 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 250-105 chr13 63010466 63010696 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -203222 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 367-190 chr2 31590195 31590554 + 2 NA Intergenic L1PA4|LINE|L1 -9436 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 531-265 chr9 81339801 81340216 + 2 NA Intergenic Intergenic 349527 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 301-225 chr2 145042562 145042744 + 2 NA intron (NR_033870, intron 3 of 4) L2|LINE|L2 374686 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 349-278 chr2 174294186 174294505 + 2 NA Intergenic L1MA10|LINE|L1 -31682 NR_038897 285084 Hs.275398 NR_038897 ENSG00000231453 LINC01305 - long intergenic non-protein coding RNA 1305 ncRNA 214-278 chr6 69628593 69628759 + 2 NA Intergenic L1MDa|LINE|L1 167790 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 356-90 chr11 98453272 98453598 + 2 NA Intergenic LTR1A2|LTR|ERV1 -567514 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 199-197 chr5 33080749 33080915 + 2 NA Intergenic Intergenic 133389 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 425-191 chr3 126631379 126631776 + 2 NA intron (NM_001173513, intron 8 of 14) L4_A_Mam|LINE|RTE-X 23547 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TR2IT1|TRXR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1 thioredoxin reductase 3 protein-coding 578-95 chr2 181207916 181208436 + 2 NA intron (NR_130784, intron 1 of 4) L1PA15|LINE|L1 84339 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 219-153 chr19 31845023 31845180 + 2 NA Intergenic L1MDa|LINE|L1 -180761 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 279-82 chr12 81687041 81687310 + 2 NA intron (NM_003625, intron 3 of 32) L2c|LINE|L2 71332 NM_001220475 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 308-47 chr10 11281807 11282010 + 2 NA intron (NM_001025076, intron 8 of 13) intron (NM_001025076, intron 8 of 13) 62766 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 184-83 chr2 40343573 40343723 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 86656 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 468-73 chr14 22828556 22828821 + 2 NA Intergenic MIRc|SINE|MIR -1199 NM_181305 122704 Hs.355935 NM_178336 ENSG00000172590 MRPL52 - mitochondrial ribosomal protein L52 protein-coding 468-37 chr10 108907937 108908345 + 2 NA Intergenic Intergenic -838848 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 157-133 chr8 128319777 128319896 + 2 NA Intergenic Intergenic 169720 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 377-23 chr1 172248667 172248939 + 2 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -103968 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 224-76 chr13 98937446 98937633 + 2 NA intron (NM_001366682, intron 2 of 53) intron (NM_001366682, intron 2 of 53) 40525 NM_001130048 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 355-261 chr2 163901372 163901577 + 2 NA Intergenic L1M2|LINE|L1 -165466 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 414-20 chr1 193994967 193995234 + 2 NA Intergenic L1MA4|LINE|L1 690355 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 168-119 chr8 114317558 114317692 + 2 NA Intergenic Intergenic -880686 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 622-88 chr3 118302837 118303360 + 2 NA Intergenic Intergenic -338670 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 554-12 chr1 105582582 105582931 + 2 NA Intergenic L1PA16|LINE|L1 36179 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 637-14 chr10 28888502 28889059 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 42372 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 200-14 chr1 182411554 182411720 + 2 NA intron (NR_034131, intron 3 of 3) L1M5|LINE|L1 4016 NR_034131 388719 Hs.508989 NM_001010899 ENSG00000203729 LINC00272 C1orf120|NCRNA00272 long intergenic non-protein coding RNA 272 ncRNA 288-197 chr2 80834890 80835061 + 2 NA Intergenic Intergenic 521596 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 333-194 chr17 71894398 71894601 + 2 NA Intergenic AluSc|SINE|Alu 131480 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 256-403 chr8 14465855 14466022 + 2 NA intron (NM_001322881, intron 2 of 6) L1M4c|LINE|L1 387572 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 295-12 chr1 90500164 90500360 + 2 NA Intergenic L2c|LINE|L2 -157488 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 326-260 chr2 123851343 123851520 + 2 NA Intergenic Intergenic 173743 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 282-169 chr17 65616846 65617051 + 2 NA Intergenic Intergenic -55300 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 244-186 chr2 215563852 215564006 + 2 NA Intergenic L1ME4a|LINE|L1 110222 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 409-278 chr7 29779536 29779873 + 2 NA Intergenic L2a|LINE|L2 -26850 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 247-143 chr16 26731330 26731535 + 2 NA Intergenic L2b|LINE|L2 -335495 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 443-21 chr1 152127402 152127674 + 2 NA Intergenic Intergenic -12084 NM_007113 7062 Hs.432416 NM_007113 ENSG00000159450 TCHH THH|THL|TRHY|UHS3 trichohyalin protein-coding 262-317 chr4 74268684 74268845 + 2 NA intron (NR_147097, intron 8 of 9) intron (NR_147097, intron 8 of 9) -39706 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 423-322 chrX 46475585 46475934 + 2 NA Intergenic AluSx|SINE|Alu 28462 NM_001129898 55634 Hs.632800 NM_017776 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 585-71 chr2 79559138 79559490 + 2 NA intron (NM_001282598, intron 1 of 17) MER5A|DNA|hAT-Charlie 36131 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 574-33 chr12 115146593 115147095 + 2 NA Intergenic L2b|LINE|L2 -462669 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 332-266 chr2 129018858 129019054 + 2 NA Intergenic AluSx|SINE|Alu 154356 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 203-155 chr3 139134556 139134710 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 30448 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 384-220 chr3 53706872 53707243 + 2 NA intron (NM_001128840, intron 9 of 47) intron (NM_001128840, intron 9 of 47) 139362 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 286-317 chr4 72406375 72406592 + 2 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 162738 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 326-548 chr8 118687679 118687937 + 2 NA intron (NR_038210, intron 3 of 4) L1MD2|LINE|L1 -65845 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 183-135 chr6 88793445 88793606 + 2 NA intron (NM_001286428, intron 10 of 13) intron (NM_001286428, intron 10 of 13) 170093 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 229-94 chr12 96773510 96773712 + 2 NA intron (NM_001306084, intron 60 of 67) L1ME4b|LINE|L1 -133646 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 321-242 chr18 10364580 10364867 + 2 NA Intergenic L1MEb|LINE|L1 49647 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 552-15 chr10 32523150 32523508 + 2 NA intron (NR_109826, intron 11 of 16) AluSx1|SINE|Alu 77189 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 282-58 chr10 111852279 111852465 + 2 NA Intergenic Intergenic 331393 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 359-168 chr16 35785398 35785628 + 2 NA Intergenic ALR/Alpha|Satellite|centr 38961 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 457-253 chr8 63893710 63894100 + 2 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 124475 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 377-119 chr14 48583780 48584111 + 2 NA Intergenic MLT2B4|LTR|ERVL -788931 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 286-161 chr17 56350265 56350523 + 2 NA intron (NM_001370326, intron 4 of 20) intron (NM_001370326, intron 4 of 20) 196919 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 308-144 chr14 61350034 61350253 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 28700 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 491-224 chr6 46025178 46025570 + 2 NA intron (NM_001370649, intron 1 of 5) MIR|SINE|MIR -9485 NM_001256023 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 272-340 chr5 42621343 42621513 + 2 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 55564 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 592-60 chr16 50857368 50857858 + 2 NA Intergenic AluJb|SINE|Alu -21160 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 518-6 chr1 112170346 112170709 + 2 NA Intergenic Intergenic 179991 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 434-96 chr15 92468575 92468872 + 2 NA TTS (NM_006011) TTS (NM_006011) 2823 NR_126501 104613533 Hs.97584 NR_126501 ENSG00000259170 LOC104613533 - uncharacterized LOC104613533 ncRNA 309-221 chr18 75817477 75817741 + 2 NA Intergenic Intergenic -105206 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 215-297 chr7 41522771 41522947 + 2 NA Intergenic Intergenic -171060 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 354-191 chr19 27629284 27629632 + 2 NA Intergenic ALR/Alpha|Satellite|centr -163973 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 252-140 chr16 10048141 10048375 + 2 NA intron (NM_001134408, intron 2 of 13) MIR|SINE|MIR 133809 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 467-105 chr17 54342831 54343166 + 2 NA Intergenic L1ME3G|LINE|L1 520071 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 383-16 chr1 112632823 112633170 + 2 NA intron (NM_006135, intron 1 of 9) intron (NM_006135, intron 1 of 9) 13164 NM_006135 829 Hs.744974 NM_006135 ENSG00000116489 CAPZA1 CAPPA1|CAPZ|CAZ1 capping actin protein of muscle Z-line subunit alpha 1 protein-coding 395-298 chr6 140127117 140127371 + 2 NA Intergenic L2c|LINE|L2 -78008 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 224-3 chr1 11780522 11780727 + 2 NA intron (NM_001010881, intron 13 of 20) MIR|SINE|MIR -1005 NR_126000 102724659 Hs.737635 NR_126000 ENSG00000177553 LOC102724659 - uncharacterized LOC102724659 ncRNA 406-239 chr5 118000669 118000887 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) 270417 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 182-174 chr8 134263428 134263598 + 2 NA Intergenic Intergenic -334558 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 416-225 chr3 99663182 99663551 + 2 NA intron (NM_020351, intron 1 of 3) intron (NM_020351, intron 1 of 3) 24772 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 175-184 chrX 145951530 145951676 + 2 NA Intergenic Intergenic 41223 NR_106783 102466721 NR_106783 ENSG00000252219 MIR892C hsa-mir-892c microRNA 892c ncRNA 228-206 chr22 30152496 30152678 + 2 NA intron (NM_001329457, intron 11 of 11) AluJo|SINE|Alu 72123 NM_001329457 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 378-88 chr11 87977697 87977925 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 197632 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 418-243 chr6 118252231 118252569 + 2 NA intron (NM_001029858, intron 3 of 7) L2a|LINE|L2 166497 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 384-184 chr2 149918302 149918625 + 2 NA Intergenic L1MB4|LINE|L1 -59272 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 386-354 chr8 94744763 94745104 + 2 NA intron (NM_181787, intron 6 of 18) intron (NM_181787, intron 6 of 18) 25033 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 178-88 chr3 94712494 94712665 + 2 NA Intergenic L1MB8|LINE|L1 -225684 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 370-465 chr8 139572330 139572585 + 2 NA Intergenic LTR16A|LTR|ERVL 130666 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 392-285 chr6 123435820 123436183 + 2 NA intron (NM_001251987, intron 12 of 20) (CA)n|Simple_repeat|Simple_repeat -3603 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 536-114 chr2 41372752 41373069 + 2 NA Intergenic L1PA13|LINE|L1 -504645 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 398-213 chr3 108217926 108218272 + 2 NA intron (NM_018010, intron 3 of 10) intron (NM_018010, intron 3 of 10) 4325 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 391-208 chr20 41246366 41246589 + 2 NA intron (NM_015035, intron 2 of 3) intron (NM_015035, intron 2 of 3) 53643 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 291-450 chr8 83329005 83329182 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -74665 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 484-258 chr8 54620318 54620640 + 2 NA intron (NM_006269, intron 1 of 3) Tigger3a|DNA|TcMar-Tigger 4383 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 697-82 chrX 67614034 67614400 + 2 NA intron (NM_001011645, intron 2 of 8) intron (NM_001011645, intron 2 of 8) 69594 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 253-41 chr1 246741197 246741421 + 2 NA intron (NM_016002, intron 4 of 11) intron (NM_016002, intron 4 of 11) 16900 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 217-243 chr3 177404387 177404529 + 2 NA Intergenic L1MD3|LINE|L1 -37463 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 292-108 chr12 72801052 72801297 + 2 NA Intergenic L2|LINE|L2 -358016 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 278-404 chr7 118715843 118716049 + 2 NA Intergenic L1ME3|LINE|L1 491242 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 214-310 chr7 138371352 138371498 + 2 NA Intergenic L1MD|LINE|L1 -88834 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 241-228 chr21 30152196 30152372 + 2 NA Intergenic Intergenic 14521 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 311-284 chr2 220368817 220369053 + 2 NA Intergenic L1MA7|LINE|L1 -462370 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 383-158 chr17 60060966 60061244 + 2 NA intron (NM_022070, intron 9 of 19) intron (NM_022070, intron 9 of 19) 17826 NM_022070 63897 Hs.221899 NM_022070 ENSG00000068097 HEATR6 ABC1 HEAT repeat containing 6 protein-coding 212-81 chr12 39418803 39418968 + 2 NA intron (NM_001173464, intron 1 of 37) MIRb|SINE|MIR 24235 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 532-144 chr20 47008428 47008947 + 2 NA intron (NM_172110, intron 4 of 13) MIR|SINE|MIR 113844 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 207-183 chr3 23544615 23544745 + 2 NA intron (NM_001370225, intron 5 of 5) LTR5_Hs|LTR|ERVK -261275 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 385-328 chr6 51138870 51139185 + 2 NA Intergenic Intergenic 320156 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 702-31 chr16 60902623 60903064 + 2 NA Intergenic Intergenic 152923 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 369-339 chr5 137302883 137303139 + 2 NA intron (NM_004598, intron 2 of 10) MIRb|SINE|MIR 174814 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 277-182 chr2 37163552 37163753 + 2 NA Intergenic L1MEc|LINE|L1 -6605 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 194-124 chr3 84738576 84738734 + 2 NA intron (NR_033860, intron 11 of 20) intron (NR_033860, intron 11 of 20) 130920 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 318-183 chr15 63759178 63759451 + 2 NA intron (NM_003922, intron 3 of 77) intron (NM_003922, intron 3 of 77) 74634 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 229-358 chr7 41594207 41594398 + 2 NA Intergenic L2c|LINE|L2 -99617 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 456-217 chr4 18327918 18328148 + 2 NA Intergenic Intergenic -306158 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 648-96 chr3 146142681 146143108 + 2 NA intron (NM_182943, intron 1 of 19) intron (NM_182943, intron 1 of 19) 18290 NM_182943 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 348-288 chr3 31314859 31315052 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -153168 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 466-126 chr2 62481154 62481416 + 2 NA Intergenic L1MA5A|LINE|L1 24910 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 265-115 chr14 88167655 88167822 + 2 NA Intergenic Intergenic 103173 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 392-199 chr3 30994794 30995104 + 2 NA Intergenic L1PA16|LINE|L1 -100288 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 482-184 chr4 64360627 64361001 + 2 NA intron (NM_001363796, intron 2 of 11) L1PA15|LINE|L1 48636 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 308-261 chr20 8639981 8640261 + 2 NA intron (NM_182734, intron 4 of 32) intron (NM_182734, intron 4 of 32) -191064 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 295-299 chr3 94244310 94244559 + 2 NA Intergenic HAL1|LINE|L1 181373 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 514-55 chr12 14192154 14192578 + 2 NA Intergenic Intergenic -173266 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 353-283 chr20 39501665 39501972 + 2 NA Intergenic Intergenic -277070 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 537-255 chr8 105787854 105788219 + 2 NA intron (NR_125796, intron 3 of 7) intron (NR_125796, intron 3 of 7) 272467 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 557-68 chr16 78788292 78788764 + 2 NA intron (NM_001291997, intron 7 of 7) MER21A|LTR|ERVL 688874 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 229-196 chr2 121678336 121678560 + 2 NA intron (NR_037857, intron 2 of 3) intron (NR_037857, intron 2 of 3) 28459 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 237-248 chr3 97548727 97548937 + 2 NA intron (NM_001080448, intron 11 of 17) L1MC4a|LINE|L1 109225 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 197-196 chr7 82171394 82171543 + 2 NA intron (NM_000722, intron 3 of 38) MIR|SINE|MIR 162291 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 213-274 chr8 70235152 70235316 + 2 NA intron (NM_001321711, intron 2 of 21) L1MB4|LINE|L1 -163982 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 231-285 chr5 60064360 60064494 + 2 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -170701 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 489-100 chr16 85972255 85972611 + 2 NA Intergenic Intergenic 54086 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 245-163 chr18 5791938 5792075 + 2 NA intron (NR_038839, intron 3 of 4) intron (NR_038839, intron 3 of 4) 43187 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 474-149 chr2 134703458 134703818 + 2 NA intron (NM_030923, intron 2 of 7) HAL1|LINE|L1 15362 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 338-5 chr1 52463346 52463624 + 2 NA intron (NM_001009881, intron 16 of 29) intron (NM_001009881, intron 16 of 29) 58883 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 512-150 chr21 15900367 15900733 + 2 NA Intergenic L1MA2|LINE|L1 -169938 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 385-350 chr7 20811287 20811640 + 2 NA Intergenic Intergenic -15835 NR_026673 222901 Hs.722187 NR_026673 ENSG00000219451 RPL23P8 RPL23_4_790 ribosomal protein L23 pseudogene 8 pseudo 248-9 chr1 83581168 83581320 + 2 NA intron (NR_119375, intron 2 of 2) L1ME1|LINE|L1 135190 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 477-253 chr7 11303139 11303543 + 2 NA Intergenic L1MEg|LINE|L1 329469 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 252-296 chr4 48145719 48145911 + 2 NA intron (NM_003215, intron 12 of 17) intron (NM_003215, intron 12 of 17) -11565 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 581-181 chr9 27140045 27140450 + 2 NA intron (NM_001290078, intron 1 of 20) MamRep137|DNA|TcMar-Tigger 31106 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 427-9 chr1 117426210 117426495 + 2 NA intron (NM_006699, intron 5 of 12) L1MC4|LINE|L1 58903 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 229-71 chr11 99924101 99924318 + 2 NA intron (NM_001243270, intron 6 of 23) L1P4|LINE|L1 368064 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 273-411 chr7 9327461 9327616 + 2 NA Intergenic Intergenic -306732 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 388-322 chr7 39932882 39933251 + 2 NA Intergenic L1MEf|LINE|L1 16353 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 407-228 chr4 117291806 117292145 + 2 NA Intergenic L1MA9|LINE|L1 68664 NR_147151 105377389 Hs.129401 NR_147151 ENSG00000224932 LINC02262 - long intergenic non-protein coding RNA 2262 ncRNA 365-76 chr11 86363623 86363977 + 2 NA Intergenic L1ME3|LINE|L1 -10936 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 273-283 chr3 10908327 10908484 + 2 NA intron (NM_014229, intron 6 of 13) L1M8|LINE|L1 -84329 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 226-3 chr1 34677321 34677489 + 2 NA Intergenic L1ME1|LINE|L1 -7711 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 208-215 chr5 125566231 125566409 + 2 NA intron (NR_109887, intron 3 of 3) AluY|SINE|Alu 73059 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 446-95 chr13 98160230 98160563 + 2 NA intron (NM_005766, intron 1 of 26) intron (NM_005766, intron 1 of 26) 16873 NM_178861 140432 Hs.296045 NM_178861 ENSG00000139797 RNF113B RNF161|ZNF183L1|bA10G5.1 ring finger protein 113B protein-coding 684-33 chr14 24476242 24476670 + 2 NA intron (NR_110032, intron 2 of 2) intron (NR_110032, intron 2 of 2) 31809 NM_001836 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 551-135 chr4 84288648 84289097 + 2 NA intron (NR_125909, intron 2 of 8) AluSx|SINE|Alu 10297 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 347-260 chr2 237416219 237416473 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -2139 NM_057167 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 268-353 chr6 121247170 121247346 + 2 NA intron (NR_104452, intron 17 of 35) L1PB2|LINE|L1 87222 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 413-2 chr1 4917542 4917888 + 2 NA Intergenic Intergenic 263106 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 267-431 chr8 122950088 122950301 + 2 NA intron (NM_001362797, intron 3 of 4) L1ME4a|LINE|L1 75578 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 632-58 chr2 138394354 138394879 + 2 NA Intergenic Intergenic -107154 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 385-227 chr21 44604043 44604248 + 2 NA intron (NM_144991, intron 1 of 11) intron (NM_144991, intron 1 of 11) 3548 NM_198689 386675 Hs.473999 NM_198689 ENSG00000272804 KRTAP10-7 KAP10.7|KAP18.7|KRTAP18-7 keratin associated protein 10-7 protein-coding 558-189 chr6 55800182 55800517 + 2 NA intron (NM_001329754, intron 2 of 5) Kanga2_a|DNA|TcMar-Tc2 75241 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 509-213 chr6 48851067 48851477 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 611981 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 756-2 chr1 191079169 191079854 + 2 NA Intergenic L1M2|LINE|L1 148987 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 201-44 chr11 38780045 38780184 + 2 NA Intergenic Intergenic 131256 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 364-334 chr5 22528556 22528752 + 2 NA intron (NM_004061, intron 1 of 14) ERVL-B4-int|LTR|ERVL -314804 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 304-282 chr2 173517905 173518078 + 2 NA Intergenic L1MEc|LINE|L1 163119 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 234-110 chr15 26051824 26051973 + 2 NA intron (NR_040082, intron 3 of 4) (CTG)n|Simple_repeat|Simple_repeat -63915 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 234-385 chr8 64975090 64975254 + 2 NA Intergenic L1MC4|LINE|L1 -176435 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 199-256 chr9 31834466 31834641 + 2 NA Intergenic MIR|SINE|MIR -453063 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 342-191 chr17 54055463 54055668 + 2 NA Intergenic Intergenic 232638 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 310-323 chr3 56055925 56056219 + 2 NA intron (NR_132749, intron 7 of 17) Arthur1B|DNA|hAT-Tip100 -203478 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 335-436 chr5 125952796 125953051 + 2 NA Intergenic Intergenic -226654 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 343-317 chr21 44364840 44365028 + 2 NA intron (NM_003307, intron 3 of 31) MER5A|DNA|hAT-Charlie 11333 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 469-66 chr12 53782136 53782493 + 2 NA Intergenic Eulor6A|DNA?|DNA? -25280 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 442-144 chr2 148235114 148235490 + 2 NA intron (NM_018328, intron 4 of 14) intron (NM_018328, intron 4 of 14) -213698 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 388-16 chr1 119324542 119324848 + 2 NA Intergenic Intergenic -3557 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 284-278 chr4 21493589 21493840 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -28956 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 204-157 chr2 180910715 180910859 + 2 NA intron (NR_104323, intron 5 of 5) intron (NR_104323, intron 5 of 5) -69598 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 203-92 chr18 44062344 44062513 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 469269 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 435-230 chr7 139017384 139017738 + 2 NA Intergenic (TTG)n|Simple_repeat|Simple_repeat 18481 NM_080660 92092 Hs.512833 NM_080660 ENSG00000146858 ZC3HAV1L C7orf39 zinc finger CCCH-type containing, antiviral 1 like protein-coding 482-214 chr5 166073619 166074099 + 2 NA Intergenic Intergenic 852511 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 390-75 chr12 62368784 62369009 + 2 NA intron (NR_147080, intron 6 of 19) L1PA7|LINE|L1 -97930 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 398-201 chr3 47361037 47361252 + 2 NA Intergenic AluSx|SINE|Alu -19877 NM_015466 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 307-110 chr12 117617394 117617602 + 2 NA intron (NM_173598, intron 5 of 19) L1MEg|LINE|L1 -255696 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 526-94 chr17 34654996 34655476 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 74487 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 123-59 chr8 121632857 121632925 + 2 NA intron (NM_005328, intron 1 of 3) MIRb|SINE|MIR -6455 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 325-544 chr8 115479859 115480056 + 2 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 188056 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 337-598 chrX 55361852 55362164 + 2 NA Intergenic L1PA10|LINE|L1 81920 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 234-2 chr1 29958151 29958305 + 2 NA Intergenic MLT2F|LTR|ERVL 79384 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 338-208 chr16 86464550 86464760 + 2 NA Intergenic (GTGATG)n|Simple_repeat|Simple_repeat 44205 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 235-285 chr5 60870001 60870159 + 2 NA Intergenic Intergenic -25806 NM_001104558 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 431-299 chr8 119467643 119468025 + 2 NA Intergenic L1PA13|LINE|L1 51388 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 516-103 chr17 67561443 67561944 + 2 NA intron (NM_181671, intron 4 of 9) intron (NM_181671, intron 4 of 9) -90108 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 411-79 chr13 29094077 29094375 + 2 NA intron (NM_001366651, intron 4 of 14) L1M4b|LINE|L1 69769 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 284-189 chr2 22716610 22716858 + 2 NA Intergenic L1MCb|LINE|L1 180255 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 295-290 chr3 35469554 35469770 + 2 NA Intergenic Intergenic -75639 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 241-32 chr10 18828834 18829015 + 2 NA Intergenic Intergenic 169493 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 450-109 chr16 82337214 82337539 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -167152 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 420-141 chr2 81271798 81272061 + 2 NA Intergenic L1PA4|LINE|L1 195017 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 516-46 chr12 24360430 24360736 + 2 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 137312 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 430-325 chr8 138642109 138642502 + 2 NA intron (NM_152888, intron 47 of 64) MIR|SINE|MIR -144575 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 387-177 chr2 104364406 104364704 + 2 NA Intergenic Intergenic 43777 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 243-462 chr8 136807654 136807837 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 276947 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 383-8 chr1 71801984 71802308 + 2 NA intron (NR_046218, intron 1 of 2) MLT1B-int|LTR|ERVL-MaLR 34866 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 142-78 chr8 75195461 75195579 + 2 NA Intergenic L1MA9|LINE|L1 82961 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 137-85 chr7 46549142 46549243 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 147930 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 305-3 chr1 38794045 38794223 + 2 NA Intergenic L1ME2z|LINE|L1 65638 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 601-126 chr5 130802506 130803002 + 2 NA Intergenic Intergenic 362502 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 424-120 chr2 4831477 4831838 + 2 NA Intergenic MER20|DNA|hAT-Charlie -175435 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 567-43 chr12 16673370 16673887 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -65414 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 209-162 chr2 149809083 149809273 + 2 NA intron (NR_145421, intron 2 of 4) HAL1|LINE|L1 50013 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 175-105 chr3 165579120 165579254 + 2 NA Intergenic L1ME3A|LINE|L1 258236 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 297-46 chr10 37986204 37986410 + 2 NA Intergenic L1MEc|LINE|L1 -9660 NM_001329657 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 321-543 chr8 29584116 29584350 + 2 NA Intergenic Intergenic 163876 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 257-139 chr16 71191123 71191330 + 2 NA intron (NM_001198543, intron 1 of 18) intron (NM_001198543, intron 1 of 18) 39496 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 496-134 chr2 69973609 69973932 + 2 NA intron (NR_033872, intron 9 of 10) MER63C|DNA|hAT-Blackjack -11505 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 313-434 chr5 80310417 80310586 + 2 NA Intergenic LTR12C|LTR|ERV1 -9501 NM_032567 84654 Hs.519403 NM_032567 ENSG00000164299 SPZ1 CILD38|NYD-TSP1|PPP1R148 spermatogenic leucine zipper 1 protein-coding 291-239 chr2 179781305 179781534 + 2 NA intron (NR_148056, intron 1 of 9) L1ME3A|LINE|L1 -34909 NM_001352815 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 373-131 chr15 71263723 71264088 + 2 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -74846 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 471-256 chr7 117577024 117577430 + 2 NA intron (NM_000492, intron 11 of 26) L2b|LINE|L2 -12551 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 281-443 chr8 122413880 122414049 + 2 NA TTS (NR_131202) TTS (NR_131202) 154680 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 326-316 chr22 33157478 33157770 + 2 NA Intergenic Intergenic 49095 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 500-268 chr7 43548823 43549288 + 2 NA intron (NM_001287059, intron 24 of 27) intron (NM_001287059, intron 24 of 27) -26513 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 166-62 chr20 10831100 10831242 + 2 NA Intergenic Intergenic 78081 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 985-7 chr10 35768274 35768983 + 2 NA Intergenic Intergenic -9674 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 579-21 chr10 120037495 120037929 + 2 NA Intergenic MIRb|SINE|MIR 79199 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 359-442 chr7 21754364 21754618 + 2 NA intron (NM_001277115, intron 54 of 81) intron (NM_001277115, intron 54 of 81) 191408 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 361-179 chr18 1493980 1494297 + 2 NA Intergenic L1PA17|LINE|L1 -134509 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 379-332 chr8 43586536 43586832 + 2 NA Intergenic ALR/Alpha|Satellite|centr 294242 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 635-110 chr8 89344917 89345442 + 2 NA Intergenic Intergenic 412532 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 371-121 chr15 89013778 89014127 + 2 NA Intergenic L1M4|LINE|L1 -74504 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 345-45 chr10 9359332 9359528 + 2 NA Intergenic Intergenic -63837 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 437-80 chr14 78373364 78373775 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -30150 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 200-197 chr4 155551654 155551819 + 2 NA Intergenic L1ME4a|LINE|L1 -114974 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 372-211 chr19 57190615 57190822 + 2 NA promoter-TSS (NM_003417) promoter-TSS (NM_003417) -782 NM_003417 9422 Hs.515634 NM_003417 ENSG00000083844 ZNF264 - zinc finger protein 264 protein-coding 489-119 chr19 28015434 28015816 + 2 NA intron (NR_146733, intron 5 of 6) intron (NR_146733, intron 5 of 6) -221685 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 474-3 chr1 49180505 49180820 + 2 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -76749 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 396-94 chr12 125802677 125802983 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 180378 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 328-439 chr5 23965363 23965682 + 2 NA intron (NR_131245, intron 1 of 4) L1ME2|LINE|L1 14174 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 295-453 chr7 118560433 118560642 + 2 NA Intergenic L1MB7|LINE|L1 335833 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 288-134 chr15 51786438 51786618 + 2 NA intron (NM_014548, intron 7 of 9) intron (NM_014548, intron 7 of 9) 34931 NM_001142885 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 280-222 chr2 195592069 195592259 + 2 NA Intergenic Intergenic -64794 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 494-49 chr12 37334831 37335166 + 2 NA Intergenic ALR/Alpha|Satellite|centr -981776 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 325-524 chr8 16323396 16323601 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -130707 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 355-31 chr1 247756378 247756596 + 2 NA TTS (NM_012353) TTS (NM_012353) 1919 NM_012353 26188 Hs.381306 NM_012353 ENSG00000221888 OR1C1 HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27 olfactory receptor family 1 subfamily C member 1 protein-coding 429-274 chr7 49557460 49557821 + 2 NA Intergenic L1P4|LINE|L1 -215998 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 145-60 chr4 52057640 52057722 + 2 NA intron (NM_001346103, intron 1 of 8) MIRb|SINE|MIR 6377 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 393-331 chr7 64777840 64778106 + 2 NA Intergenic L1MB2|LINE|L1 -16455 NM_001271638 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 501-246 chr7 88224044 88224480 + 2 NA intron (NM_198901, intron 1 of 7) intron (NM_198901, intron 1 of 7) 2731 NM_001256892 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 255-34 chr10 79941094 79941264 + 2 NA intron (NM_003019, intron 6 of 7) intron (NM_003019, intron 6 of 7) 7926 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 299-66 chr10 101444938 101445088 + 2 NA intron (NM_001256856, intron 2 of 13) intron (NM_001256856, intron 2 of 13) 90848 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 215-272 chr5 178708999 178709168 + 2 NA Intergenic Intergenic 21576 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 575-19 chr10 43623894 43624250 + 2 NA Intergenic MER21B|LTR|ERVL -4745 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 285-41 chr10 64590399 64590637 + 2 NA Intergenic Intergenic -235010 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 418-55 chr12 47554225 47554532 + 2 NA Intergenic Intergenic 139370 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 425-224 chr5 20150316 20150731 + 2 NA intron (NM_001291956, intron 2 of 14) L1ME3D|LINE|L1 -155028 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 361-37 chr10 33545017 33545281 + 2 NA Intergenic L1ME1|LINE|L1 -210244 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 250-92 chr12 43065108 43065290 + 2 NA Intergenic Intergenic -90116 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 481-320 chrX 46497848 46498207 + 2 NA 3' UTR (NM_001039891, exon 6 of 6) 3' UTR (NM_001039891, exon 6 of 6) 47394 NM_001039891 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 293-130 chr15 58270550 58270740 + 2 NA Intergenic LTR41B|LTR|ERVL 132264 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 321-357 chr22 48368215 48368412 + 2 NA Intergenic L1M5|LINE|L1 93949 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 288-250 chr22 48384209 48384434 + 2 NA Intergenic L1MC1|LINE|L1 -105232 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 378-347 chr5 117718170 117718414 + 2 NA Intergenic Intergenic -12069 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 534-248 chr8 43582103 43582468 + 2 NA Intergenic ALR/Alpha|Satellite|centr 289843 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 299-439 chr8 23597405 23597638 + 2 NA Intergenic Intergenic 68565 NM_001317814 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 395-350 chr8 140039500 140039838 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 60866 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 249-117 chr14 49354760 49354957 + 2 NA Intergenic L1ME4a|LINE|L1 231522 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 302-173 chr17 69209462 69209654 + 2 NA intron (NM_080282, intron 10 of 39) intron (NM_080282, intron 10 of 39) 25454 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 242-109 chr14 80036363 80036577 + 2 NA Intergenic L1MA8|LINE|L1 -174949 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 308-406 chr5 179073298 179073559 + 2 NA intron (NM_014594, intron 2 of 4) L1MEb|LINE|L1 13055 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 515-278 chr9 104468580 104468910 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -35518 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 364-384 chr6 86463060 86463316 + 2 NA Intergenic Intergenic -474340 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 383-170 chr18 76270571 76270789 + 2 NA Intergenic MER33|DNA|hAT-Charlie 61170 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 235-250 chr4 43438314 43438465 + 2 NA Intergenic HERV16-int|LTR|ERVL 54154 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 525-183 chr4 151472100 151472545 + 2 NA intron (NM_001109977, intron 2 of 13) intron (NM_001109977, intron 2 of 13) 63146 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 469-90 chr15 37226742 37227063 + 2 NA Intergenic L1PA7|LINE|L1 -125591 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 317-235 chr2 98661538 98661840 + 2 NA intron (NM_001160154, intron 2 of 12) intron (NM_001160154, intron 2 of 12) 1784 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 159-19 chr12 21075000 21075121 + 2 NA intron (NM_001009562, intron 11 of 12) Tigger16a|DNA|TcMar-Tigger -56134 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 220-238 chr3 111291351 111291552 + 2 NA Intergenic L1PB1|LINE|L1 219635 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 269-403 chr8 79151575 79151776 + 2 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -180513 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 421-166 chr20 52506659 52506944 + 2 NA Intergenic L1MA3|LINE|L1 -114037 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 542-100 chr2 84771497 84771965 + 2 NA intron (NM_001370, intron 64 of 76) L1M4|LINE|L1 109353 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 564-109 chr2 217563720 217564094 + 2 NA intron (NR_026597, intron 2 of 12) intron (NR_026597, intron 2 of 12) 192686 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 888-36 chr6 155927290 155927960 + 2 NA Intergenic L1MB8|LINE|L1 -19172 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 442-299 chr8 130475032 130475359 + 2 NA Intergenic MIRc|SINE|MIR -31521 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 343-116 chr12 125911507 125911727 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 71757 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 898-24 chr3 181935462 181936142 + 2 NA Intergenic L1MC5|LINE|L1 -16562 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 299-443 chr8 48723389 48723678 + 2 NA non-coding (NR_024605, exon 6 of 6) non-coding (NR_024605, exon 6 of 6) 11735 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 423-196 chr4 63890314 63890695 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 518946 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 229-205 chr2 160732553 160732681 + 2 NA Intergenic L1ME3B|LINE|L1 -238810 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 383 chr1 3236038 3236252 + 2 NA intron (NM_022114, intron 2 of 16) intron (NM_022114, intron 2 of 16) 108170 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 250-138 chr15 64008863 64009058 + 2 NA intron (NM_014326, intron 2 of 11) intron (NM_014326, intron 2 of 11) 37525 NM_001363730 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 283-314 chr4 37385163 37385361 + 2 NA intron (NM_001144990, intron 3 of 6) LTR79|LTR|ERVL -68663 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 224-173 chr20 13319698 13319875 + 2 NA Intergenic Intergenic -80099 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 387-316 chr6 98994177 98994443 + 2 NA Intergenic L2b|LINE|L2 -46304 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 338-263 chr2 103603429 103603687 + 2 NA Intergenic Intergenic -619129 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 247-218 chr2 147086874 147087039 + 2 NA Intergenic Intergenic 499899 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 295-27 chr1 192617301 192617491 + 2 NA Intergenic Intergenic -18751 NM_002927 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 343-212 chr19 14719096 14719283 + 2 NA exon (NM_032433, exon 12 of 12) exon (NM_032433, exon 12 of 12) 29141 NM_001352244 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 239-119 chr15 86355219 86355405 + 2 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -38344 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 300-172 chr19 34820704 34820897 + 2 NA intron (NR_033982, intron 4 of 5) L1MC2|LINE|L1 12069 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 306-168 chr15 79781705 79781914 + 2 NA Intergenic L1PA12|LINE|L1 115188 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 439-297 chr9 1763134 1763503 + 2 NA Intergenic Intergenic -252029 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 301-305 chr4 32473639 32473855 + 2 NA Intergenic LTR1A1|LTR|ERV1 122709 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 330-201 chr16 84333676 84333979 + 2 NA Intergenic L1M1|LINE|L1 -34696 NM_014861 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 225-385 chr9 30279625 30279834 + 2 NA Intergenic LTR27E|LTR|ERV1 128725 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 231-199 chr21 29662361 29662570 + 2 NA intron (NM_000830, intron 4 of 16) intron (NM_000830, intron 4 of 16) 66425 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 886-24 chr3 65117993 65118523 + 2 NA Intergenic Intergenic -430258 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 312-214 chr18 77369423 77369680 + 2 NA Intergenic L1MEf|LINE|L1 119703 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 329-461 chr5 85741141 85741320 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -541214 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 323-122 chr12 115607645 115607913 + 2 NA Intergenic Intergenic 540875 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 440-99 chr18 60278513 60278944 + 2 NA Intergenic Intergenic 94047 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 731-30 chr15 60544759 60545191 + 2 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 47551 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 326-555 chr8 129616801 129617077 + 2 NA intron (NR_130917, intron 1 of 3) Arthur1|DNA|hAT-Tip100 -41921 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 462-48 chr11 84064397 84064697 + 2 NA intron (NM_001142699, intron 10 of 27) MIRb|SINE|MIR 208733 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 147-72 chr5 37979754 37979886 + 2 NA Intergenic Intergenic 31329 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 472-329 chr8 129015399 129015689 + 2 NA Intergenic L1PA13|LINE|L1 -49543 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 287-316 chr5 63900785 63901002 + 2 NA Intergenic L1MDa|LINE|L1 61399 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 212-270 chr5 154132277 154132443 + 2 NA Intergenic Intergenic -58373 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 621-89 chr5 10198351 10198717 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 51354 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 521-48 chr11 56075921 56076285 + 2 NA Intergenic L1PA10|LINE|L1 -17205 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 456-39 chr10 90242329 90242743 + 2 NA Intergenic L1MEi|LINE|L1 -285163 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 279-449 chrX 88765598 88765756 + 2 NA Intergenic L1MB7|LINE|L1 18452 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 150-98 chr7 33836085 33836180 + 2 NA Intergenic Intergenic -68783 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 240-243 chr2 165360414 165360561 + 2 NA intron (NM_001040143, intron 18 of 27) intron (NM_001040143, intron 18 of 27) 66432 NM_021007 6326 Hs.93485 NM_021007 ENSG00000136531 SCN2A BFIC3|BFIS3|BFNIS|EIEE11|HBA|HBSCI|HBSCII|NAC2|Na(v)1.2|Nav1.2|SCN2A1|SCN2A2 sodium voltage-gated channel alpha subunit 2 protein-coding 233-283 chr5 10024409 10024623 + 2 NA Intergenic L1M3f|LINE|L1 -120692 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 535-37 chr11 20355823 20356325 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -7611 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 327-410 chr5 112012031 112012264 + 2 NA intron (NR_046678, intron 3 of 3) intron (NR_046678, intron 3 of 3) -35215 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 363-452 chr8 122523245 122523547 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 45248 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 531-230 chr7 71086853 71087182 + 2 NA Intergenic LTR9|LTR|ERV1 -45127 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 515-118 chr2 88153830 88154219 + 2 NA Intergenic L1MA5|LINE|L1 -16271 NM_001244678 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 289-267 chr20 46986290 46986449 + 2 NA intron (NM_172110, intron 1 of 13) (AT)n|Simple_repeat|Simple_repeat 91526 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 286-411 chr7 30959808 30960061 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -4019 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 237 chr1 5021474 5021654 + 2 NA Intergenic Intergenic 366955 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 278-264 chr3 23280094 23280336 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 76888 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 380-316 chr5 127580831 127581125 + 2 NA Intergenic L1MA9|LINE|L1 63338 NM_130809 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 267-280 chr4 15196088 15196298 + 2 NA intron (NR_125911, intron 2 of 5) MIRc|SINE|MIR -143795 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 362-386 chr6 139752921 139753223 + 2 NA Intergenic Intergenic -18001 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 533-101 chr2 84660763 84661193 + 2 NA intron (NM_001370, intron 37 of 76) L1MC4a|LINE|L1 144523 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 134-63 chr4 74872678 74872768 + 2 NA Intergenic Intergenic -60393 NM_015393 25849 Hs.105460 NM_015393 ENSG00000169116 PARM1 Cipar1|DKFZP564O0823|PARM-1|WSC4 prostate androgen-regulated mucin-like protein 1 protein-coding 309-318 chr21 27512317 27512597 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -209922 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 324-396 chr4 77645783 77646092 + 2 NA Intergenic L1MA1|LINE|L1 134184 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 732-25 chr12 63274329 63275000 + 2 NA Intergenic Intergenic -121854 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 406-124 chr18 80096834 80097195 + 2 NA Intergenic MER89-int|LTR|ERV1 -12248 NM_014913 22850 Hs.131915 NM_014913 ENSG00000101544 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 359-170 chr16 54532670 54532939 + 2 NA Intergenic Intergenic -162105 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 394-268 chr5 64593089 64593342 + 2 NA intron (NM_001271891, intron 1 of 3) intron (NM_001271891, intron 1 of 3) 17565 NM_001271890 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 322-464 chr6 96086730 96087041 + 2 NA intron (NM_006581, intron 1 of 2) intron (NM_006581, intron 1 of 2) 70911 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 358-532 chrX 145927886 145928118 + 2 NA Intergenic L1M1|LINE|L1 64824 NR_106783 102466721 NR_106783 ENSG00000252219 MIR892C hsa-mir-892c microRNA 892c ncRNA 355-267 chr2 204981720 204982020 + 2 NA intron (NM_205863, intron 3 of 21) L2a|LINE|L2 436395 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 378-180 chr17 74506738 74506985 + 2 NA Intergenic L1M1|LINE|L1 24614 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 361-261 chr21 19469713 19469943 + 2 NA Intergenic MLT1G-int|LTR|ERVL-MaLR 429927 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 318-51 chr10 7998263 7998529 + 2 NA intron (NM_031923, intron 4 of 6) intron (NM_031923, intron 4 of 6) 54095 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 306-341 chr4 13856115 13856285 + 2 NA intron (NR_121681, intron 3 of 3) MLT1A0-int|LTR|ERVL-MaLR 201021 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 196-48 chr11 91612271 91612419 + 2 NA Intergenic Intergenic -612689 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 478-266 chr7 41168012 41168399 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 66601 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 269-95 chr12 93424307 93424534 + 2 NA intron (NM_003348, intron 1 of 3) intron (NM_003348, intron 1 of 3) 17527 NM_003348 7334 Hs.524630 NM_003348 ENSG00000177889 UBE2N HEL-S-71|UBC13|UBCHBEN; UBC13|UbcH-ben|UbcH13 ubiquitin conjugating enzyme E2 N protein-coding 397-34 chr10 68126737 68127032 + 2 NA intron (NR_045663, intron 2 of 17) intron (NR_045663, intron 2 of 17) 17396 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 224-113 chr17 48203644 48203819 + 2 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -47220 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 280-51 chr10 61961002 61961213 + 2 NA intron (NM_032199, intron 3 of 9) MER113|DNA|hAT-Charlie 59408 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 239-224 chr21 40909471 40909649 + 2 NA Intergenic Intergenic -62402 NR_073202 1826 Hs.160418 NM_001389 ENSG00000171587 DSCAM CHD2|CHD2-42|CHD2-52 DS cell adhesion molecule protein-coding 413-228 chr4 172631759 172631973 + 2 NA intron (NR_125895, intron 3 of 4) intron (NR_125895, intron 3 of 4) 57051 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 375-264 chr3 69610930 69611125 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -128437 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 217-217 chr3 17079979 17080185 + 2 NA intron (NM_015184, intron 5 of 5) intron (NM_015184, intron 5 of 5) 146886 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 322-171 chr15 46016060 46016243 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 310956 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 357-287 chr3 144031496 144031722 + 2 NA Intergenic L1MC5a|LINE|L1 58528 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 419-58 chr11 108876388 108876689 + 2 NA intron (NM_004398, intron 16 of 17) MIRb|SINE|MIR 211469 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 160-53 chr21 14765736 14765862 + 2 NA Intergenic L2b|LINE|L2 -122692 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 348-254 chr2 237930825 237931107 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -35979 NR_037904 100533179 Hs.471785 NR_037904 ENSG00000258984 UBE2F-SCLY - UBE2F-SCLY readthrough (NMD candidate) ncRNA 310-251 chr2 107981696 107981953 + 2 NA Intergenic Intergenic -4700 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 348-87 chr11 83295124 83295347 + 2 NA Intergenic Intergenic -8828 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 224-78 chr14 30436324 30436459 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -122732 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 251-170 chr2 68812846 68813044 + 2 NA intron (NM_001007231, intron 5 of 10) intron (NM_001007231, intron 5 of 10) 38035 NM_001166276 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 246-143 chr16 73720363 73720557 + 2 NA Intergenic L1ME4a|LINE|L1 333655 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 498-172 chr3 87871782 87872124 + 2 NA intron (NM_001322210, intron 2 of 2) L1MB2|LINE|L1 79247 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 438-303 chrX 67319986 67320331 + 2 NA Intergenic L1M4|LINE|L1 -223863 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 307-447 chr7 42662657 42662820 + 2 NA intron (NR_110833, intron 2 of 2) L1MEd|LINE|L1 43709 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 383-359 chr7 62816615 62816853 + 2 NA Intergenic ALR/Alpha|Satellite|centr 487322 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 387-20 chr1 203196334 203196672 + 2 NA Intergenic Intergenic -9799 NM_001276 1116 Hs.382202 NM_001276 ENSG00000133048 CHI3L1 ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YK-40|YKL-40|YKL40|YYL-40|hCGP-39 chitinase 3 like 1 protein-coding 352-98 chr12 32617750 32617993 + 2 NA intron (NM_001370297, intron 8 of 14) intron (NM_001370297, intron 8 of 14) -61329 NM_001278465 10059 Hs.556296 NM_005690 ENSG00000087470 DNM1L DLP1|DRP1|DVLP|DYMPLE|EMPF|EMPF1|HDYNIV|OPA5 dynamin 1 like protein-coding 325-453 chr5 97543109 97543319 + 2 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 38518 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 501-48 chr12 24332837 24333194 + 2 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 109744 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 286-121 chr14 63009729 63009947 + 2 NA intron (NM_139318, intron 2 of 10) intron (NM_139318, intron 2 of 10) 35620 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 271-138 chr14 66819720 66819921 + 2 NA intron (NM_001024218, intron 3 of 21) HAL1b|LINE|L1 312413 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 428-31 chr10 117650759 117651108 + 2 NA Intergenic Intergenic -105865 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 172-71 chr20 52997128 52997231 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 24821 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 291-228 chr2 114447384 114447567 + 2 NA intron (NM_001321910, intron 1 of 26) intron (NM_001321910, intron 1 of 26) 4834 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 353-453 chr6 63841309 63841543 + 2 NA intron (NM_001292009, intron 36 of 43) MIR|SINE|MIR 34590 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 470-269 chr8 98203900 98204215 + 2 NA intron (NR_135747, intron 8 of 11) intron (NR_135747, intron 8 of 11) 86217 NM_015029 10940 Hs.252828 NM_015029 ENSG00000104356 POP1 ANXD2 POP1 homolog, ribonuclease P/MRP subunit protein-coding 366-391 chr6 154113357 154113681 + 2 NA intron (NR_104348, intron 4 of 4) HERVL40-int|LTR|ERVL 23757 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 388-9 chr1 85480726 85481029 + 2 NA intron (NM_001134445, intron 2 of 6) L1ME3G|LINE|L1 -15718 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 312-468 chr7 4019376 4019544 + 2 NA intron (NM_152744, intron 17 of 44) intron (NM_152744, intron 17 of 44) -110225 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 138-84 chr7 68397344 68397420 + 2 NA Intergenic L1MC4|LINE|L1 377129 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 202-212 chr5 97910465 97910629 + 2 NA intron (NR_146299, intron 2 of 2) L1MEi|LINE|L1 69789 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 276-153 chr14 75385835 75386009 + 2 NA Intergenic L1MC3|LINE|L1 -41802 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 646-6 chr1 168421990 168422568 + 2 NA intron (NR_037851, intron 1 of 3) intron (NR_037851, intron 1 of 3) 377 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 221-77 chr14 21047584 21047746 + 2 NA intron (NM_001282211, intron 1 of 14) intron (NM_001282211, intron 1 of 14) 5303 NM_032572 84659 Hs.525206 NM_032572 ENSG00000165799 RNASE7 RAE1 ribonuclease A family member 7 protein-coding 182-97 chr2 153894669 153894828 + 2 NA intron (NM_052917, intron 1 of 12) intron (NM_052917, intron 1 of 12) 22826 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 205-290 chr8 142269895 142270068 + 2 NA 3' UTR (NM_001291931, exon 11 of 11) 3' UTR (NM_001291931, exon 11 of 11) 71625 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 909-10 chr15 55099914 55100611 + 2 NA Intergenic Intergenic 43515 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 311-543 chr9 42387605 42387826 + 2 NA Intergenic AluSx|SINE|Alu 181634 NR_126050 103908605 Hs.721139 NR_126050 LOC103908605 - uncharacterized LOC103908605 ncRNA 515-18 chr1 240799403 240799801 + 2 NA intron (NM_001350116, intron 16 of 16) MER30B|DNA|hAT-Charlie -187447 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 231-344 chr8 6387733 6387903 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 18730 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 189-188 chr7 62887493 62887644 + 2 NA Intergenic ALR/Alpha|Satellite|centr 416488 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 540-93 chr16 75868556 75869001 + 2 NA Intergenic Intergenic -142288 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 451-103 chr18 38857140 38857434 + 2 NA Intergenic MER21C|LTR|ERVL 764888 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 266-211 chr2 213453472 213453674 + 2 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 169109 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 253-83 chr11 97838813 97839000 + 2 NA Intergenic Intergenic -1182043 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 389-135 chr17 42247027 42247253 + 2 NA intron (NM_012448, intron 1 of 18) intron (NM_012448, intron 1 of 18) 29266 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 460-263 chr6 142554812 142555083 + 2 NA intron (NR_027312, intron 1 of 2) intron (NR_027312, intron 1 of 2) 82889 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 198-109 chr19 36899788 36899944 + 2 NA intron (NM_001037232, intron 5 of 5) L1MA9|LINE|L1 16173 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 325-437 chr5 38368835 38369095 + 2 NA intron (NM_152403, intron 5 of 21) MIR|SINE|MIR 34506 NR_102749 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 177-75 chr2 103877963 103878116 + 2 NA Intergenic Intergenic 530293 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 283-304 chr3 182467760 182467927 + 2 NA intron (NR_040105, intron 2 of 3) L1PB1|LINE|L1 18519 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 338-301 chr20 55164438 55164651 + 2 NA Intergenic MSTA1|LTR|ERVL-MaLR -258499 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 349-280 chr2 188176136 188176383 + 2 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 111432 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 264-141 chr15 37557921 37558157 + 2 NA Intergenic L1PA13|LINE|L1 -376568 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 362-285 chr3 177302714 177303056 + 2 NA intron (NR_047465, intron 1 of 1) HAL1b|LINE|L1 8443 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 332-275 chr2 193303132 193303344 + 2 NA Intergenic Intergenic 553393 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 429-263 chr6 161942774 161943081 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 471950 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 265-320 chr5 133531901 133532078 + 2 NA intron (NM_015082, intron 3 of 15) MLT1D|LTR|ERVL-MaLR 80552 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 251-391 chr8 84442960 84443152 + 2 NA intron (NM_001354308, intron 2 of 9) MIR|SINE|MIR 27572 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 336-426 chr4 102860417 102860696 + 2 NA intron (NM_181890, intron 1 of 7) L1M3c|LINE|L1 8337 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 351-12 chr1 106156635 106156833 + 2 NA Intergenic L2a|LINE|L2 -128481 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 203-24 chr10 43011281 43011436 + 2 NA Intergenic Intergenic 13795 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 176-59 chr2 105855170 105855320 + 2 NA exon (NM_001004722, exon 3 of 4) exon (NM_001004722, exon 3 of 4) 3398 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 144-36 chr2 7987828 7987936 + 2 NA Intergenic Intergenic -11068 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 493-122 chr18 79932535 79932975 + 2 NA intron (NM_001146345, intron 3 of 4) L1M4b|LINE|L1 18898 NM_025078 80148 Hs.288284 NM_025078 ENSG00000122490 SLC66A2 PQLC1 solute carrier family 66 member 2 protein-coding 237-26 chr1 247539614 247539798 + 2 NA intron (NM_001281834, intron 3 of 6) L2a|LINE|L2 -5867 NM_198074 81472 Hs.730218 NM_198074 ENSG00000284824 OR2C3 OR2C4|OR2C5P|OST742 olfactory receptor family 2 subfamily C member 3 protein-coding 224-292 chr7 8284632 8284816 + 2 NA intron (NR_125740, intron 3 of 5) ERVL-E-int|LTR|ERVL -22112 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 289-72 chr10 125498053 125498294 + 2 NA Intergenic Intergenic -76198 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 258-41 chr10 15519003 15519220 + 2 NA intron (NM_001291494, intron 28 of 28) intron (NM_001291494, intron 28 of 28) -147822 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 370-482 chrX 21470569 21470757 + 2 NA intron (NM_001168648, intron 4 of 20) intron (NM_001168648, intron 4 of 20) 96245 NM_001330772 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 300-327 chr4 74161159 74161375 + 2 NA 3' UTR (NM_001351329, exon 2 of 2) 3' UTR (NM_001351329, exon 2 of 2) 3149 NR_147097 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 209-256 chr5 104366204 104366338 + 2 NA Intergenic MER57A-int|LTR|ERV1 -733203 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 222-152 chr18 71760688 71760847 + 2 NA intron (NR_126324, intron 1 of 4) Tigger2b_Pri|DNA|TcMar-Tigger 21459 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 392-282 chr6 113786417 113786769 + 2 NA Intergenic Intergenic -70752 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 595-111 chr3 68305208 68305580 + 2 NA intron (NM_001252216, intron 2 of 4) (TA)n|Simple_repeat|Simple_repeat -195243 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 191-47 chr13 62396741 62396871 + 2 NA Intergenic Intergenic 73149 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 157-118 chr7 18383479 18383576 + 2 NA intron (NM_001321896, intron 1 of 12) L1M5|LINE|L1 93435 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 359-434 chr6 123960322 123960670 + 2 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 156631 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 370-55 chr10 76641502 76641780 + 2 NA Intergenic Intergenic -246403 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 431-161 chr20 18843537 18843804 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -13467 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 320-251 chr2 19814744 19815012 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -53976 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 952-12 chr15 95784398 95785002 + 2 NA Intergenic tRNA-Lys-AAG|tRNA|tRNA 343141 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 607-104 chr3 194948825 194949363 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -145494 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 563-49 chr14 44612165 44612585 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 104966 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 257-78 chr11 122276294 122276463 + 2 NA intron (NR_137180, intron 2 of 4) intron (NR_137180, intron 2 of 4) 33109 NR_137193 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 824-57 chrX 96432878 96433678 + 2 NA Intergenic Intergenic -95376 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 175-149 chr7 48954267 48954413 + 2 NA Intergenic L1MD2|LINE|L1 29793 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 165-38 chr15 76903901 76904010 + 2 NA intron (NR_148227, intron 1 of 32) MIR|SINE|MIR 1385 NM_001353009 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 379-62 chr11 92106295 92106613 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -118580 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 283-136 chr14 71945871 71946035 + 2 NA intron (NM_001370288, intron 1 of 16) intron (NM_001370288, intron 1 of 16) 12426 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 401-14 chr1 193412219 193412563 + 2 NA Intergenic Intergenic 107646 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 280-177 chr19 27885477 27885643 + 2 NA intron (NR_146734, intron 1 of 7) LTR9B|LTR|ERV1 -91620 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 377-341 chr5 179028202 179028446 + 2 NA intron (NM_001353372, intron 4 of 4) intron (NM_001353372, intron 4 of 4) 4520 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 539-49 chr12 24655264 24655670 + 2 NA Intergenic L1MA3|LINE|L1 -71299 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 324-476 chr6 146413742 146414060 + 2 NA intron (NM_001278067, intron 7 of 7) L1ME2|LINE|L1 -129932 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 321-480 chr5 159397224 159397475 + 2 NA Intergenic Intergenic 65831 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 262-315 chr4 67087517 67087707 + 2 NA Intergenic Intergenic 334388 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 266-39 chr10 60688460 60688651 + 2 NA intron (NM_001204403, intron 1 of 43) L1M5|LINE|L1 44973 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 482-83 chr15 58746313 58746627 + 2 NA intron (NM_001320570, intron 1 of 14) intron (NM_001320570, intron 1 of 14) 3237 NM_001110 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 579-135 chr5 175782419 175782830 + 2 NA Intergenic L1MA8|LINE|L1 -13909 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 290-226 chr2 166812873 166813103 + 2 NA Intergenic L1MC3|LINE|L1 -75499 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 402-363 chr9 25266969 25267277 + 2 NA Intergenic Intergenic 411735 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 174-137 chr7 20626614 20626756 + 2 NA intron (NM_001163941, intron 3 of 27) intron (NM_001163941, intron 3 of 27) 11018 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 145-89 chr8 111042447 111042530 + 2 NA Intergenic Intergenic -15055 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 510-166 chr2 239744588 239744936 + 2 NA Intergenic Intergenic -18098 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 266-410 chr8 52074509 52074722 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -119747 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 446-117 chr17 33909475 33909814 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 247162 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 472-69 chr13 23063832 23064160 + 2 NA Intergenic Intergenic -116925 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 297-437 chr7 51116705 51116928 + 2 NA intron (NM_015198, intron 6 of 12) L1MEf|LINE|L1 199993 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 257-222 chr2 188930555 188930696 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -43748 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 466-194 chr5 9092826 9093195 + 2 NA intron (NM_003966, intron 16 of 22) intron (NM_003966, intron 16 of 22) -39115 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 138-52 chr3 164526471 164526556 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 304967 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 336-39 chr1 184311258 184311437 + 2 NA Intergenic L1MA1|LINE|L1 -75682 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 352-264 chr2 184861281 184861625 + 2 NA intron (NM_194250, intron 1 of 3) L1MA8|LINE|L1 262924 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 361-64 chr11 6733131 6733346 + 2 NA Intergenic Intergenic -11359 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 434-270 chr7 93453056 93453299 + 2 NA intron (NM_001164738, intron 7 of 12) intron (NM_001164738, intron 7 of 12) 29678 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 135-39 chr20 45219198 45219269 + 2 NA Intergenic Intergenic -2140 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 469-107 chr17 52116146 52116497 + 2 NA intron (NM_001082533, intron 2 of 9) MER61-int|LTR|ERV1 42393 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 370-463 chr8 137842164 137842431 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 241248 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 321-585 chr8 139818558 139818817 + 2 NA intron (NM_001160372, intron 21 of 22) MER63B|DNA|hAT-Blackjack -115564 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 258-407 chr8 120270363 120270557 + 2 NA intron (NM_021110, intron 26 of 47) intron (NM_021110, intron 26 of 47) 145358 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 283-243 chr2 129124869 129125048 + 2 NA Intergenic L1PBa|LINE|L1 148933 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 375-261 chr3 51172116 51172484 + 2 NA intron (NM_004947, intron 12 of 52) AluSc8|SINE|Alu -212991 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 252-419 chr8 82710646 82710859 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -201352 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 320-479 chr6 45304794 45305042 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -23399 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 361-170 chr17 53801762 53802070 + 2 NA Intergenic Intergenic -21011 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 621-131 chr8 118696588 118697176 + 2 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -74919 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 548-48 chr12 16803889 16804244 + 2 NA Intergenic Intergenic -184681 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 245-344 chr8 79233589 79233751 + 2 NA Intergenic L1PB4|LINE|L1 -98518 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 349-320 chr3 5905170 5905362 + 2 NA Intergenic L1ME3Cz|LINE|L1 -655011 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 345-321 chr21 27470660 27470946 + 2 NA Intergenic Intergenic -251576 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 345-166 chr14 90843356 90843586 + 2 NA Intergenic AluSx1|SINE|Alu -27041 NM_001010854 145567 Hs.655697 NM_001010854 ENSG00000165914 TTC7B TTC7L1|c14_5685 tetratricopeptide repeat domain 7B protein-coding 362-114 chr12 43182789 43183026 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 27592 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 273-99 chr12 22111071 22111274 + 2 NA Intergenic Intergenic 64954 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 311-199 chr17 55652563 55652841 + 2 NA Intergenic L1MB8|LINE|L1 70162 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 379-39 chr10 44324382 44324657 + 2 NA Intergenic (AAAG)n|Simple_repeat|Simple_repeat 31769 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 597-98 chr4 54607535 54607931 + 2 NA promoter-TSS (NR_134657) promoter-TSS (NR_134657) -602 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 368-181 chr16 77012457 77012813 + 2 NA Intergenic Intergenic 143699 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 370-44 chr10 53617160 53617436 + 2 NA Intergenic Intergenic -845598 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 310-212 chr19 30274070 30274304 + 2 NA Intergenic Intergenic -98197 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 229-410 chr9 32336383 32336577 + 2 NA Intergenic Intergenic -48123 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 274-406 chr8 135254448 135254696 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 20441 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 208-78 chr14 83818772 83818958 + 2 NA Intergenic Intergenic 1176233 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 470-89 chr16 31643418 31643763 + 2 NA Intergenic AluSx1|SINE|Alu -57023 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 158-113 chr8 61380790 61380941 + 2 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 92895 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 296-234 chr2 107304810 107305028 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 44606 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 359-103 chr11 116372583 116372788 + 2 NA Intergenic Intergenic -266737 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 371-220 chr20 44774209 44774458 + 2 NA intron (NM_001205317, intron 1 of 5) MLT2A2|LTR|ERVL -28106 NR_132377 106144538 Hs.255479 NR_132377 KCNK15-AS1 - KCNK15 and WISP2 antisense RNA 1 ncRNA 314-175 chr14 69865493 69865725 + 2 NA Intergenic Intergenic -13807 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 342-365 chr4 88359518 88359821 + 2 NA Intergenic MER48|LTR|ERV1 -19070 NM_001165136 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 242-22 chr1 192456922 192457139 + 2 NA Intergenic MIRb|SINE|MIR -118743 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 375-279 chr4 10907859 10908087 + 2 NA Intergenic Intergenic -223205 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 204-13 chr1 189636727 189636879 + 2 NA Intergenic (GA)n|Simple_repeat|Simple_repeat 839207 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 418-265 chr7 64988106 64988450 + 2 NA intron (NM_001348050, intron 1 of 3) L1PREC2|LINE|L1 2758 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 198-36 chr11 29564313 29564413 + 2 NA Intergenic Intergenic -30050 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 244-303 chr5 73286814 73287016 + 2 NA Intergenic L1ME4b|LINE|L1 -50991 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 849-25 chr20 43416663 43417316 + 2 NA Intergenic L1M2c|LINE|L1 -40907 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 428-248 chr6 4298531 4298860 + 2 NA Intergenic Intergenic -108666 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 229-76 chr11 107036634 107036795 + 2 NA Intergenic L1ME2|LINE|L1 -18238 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 360-465 chr8 89136917 89137260 + 2 NA Intergenic Intergenic 620623 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 560-146 chr6 52479986 52480447 + 2 NA intron (NR_033327, intron 8 of 9) Tigger2a|DNA|TcMar-Tigger 59208 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 359-523 chrX 78904631 78904836 + 2 NA Intergenic L1MB3|LINE|L1 -3484 NR_036258 100422932 NR_036258 ENSG00000283622 MIR4328 - microRNA 4328 ncRNA 262-219 chr2 121237466 121237705 + 2 NA intron (NM_014553, intron 10 of 14) intron (NM_014553, intron 10 of 14) 47617 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 225-304 chr6 14760187 14760386 + 2 NA Intergenic L2b|LINE|L2 -474832 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 308-307 chr3 124574167 124574349 + 2 NA intron (NM_001024660, intron 34 of 59) intron (NM_001024660, intron 34 of 59) -10400 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 222-313 chr5 173422605 173422765 + 2 NA Intergenic L1ME4a|LINE|L1 75230 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 404-61 chr11 39057265 39057584 + 2 NA Intergenic MIRb|SINE|MIR 408566 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 208-275 chr8 128285844 128286042 + 2 NA Intergenic Intergenic 135827 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 705 chr1 57166012 57166538 + 2 NA intron (NM_001353980, intron 5 of 5) MIRb|SINE|MIR -200135 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 218-109 chr16 6755718 6755918 + 2 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -17991 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 185-201 chr8 81547490 81547672 + 2 NA Intergenic Intergenic -16191 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 334-264 chr2 66312943 66313266 + 2 NA Intergenic Intergenic 45224 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 456-333 chr8 137936757 137937126 + 2 NA intron (NR_161374, intron 2 of 7) MIRb|SINE|MIR 146604 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 244-349 chr7 90421755 90421927 + 2 NA Intergenic Intergenic 18380 NM_001185073 9069 Hs.731917 NM_012129 ENSG00000157224 CLDN12 - claudin 12 protein-coding 598-86 chr3 41491520 41492082 + 2 NA intron (NR_136342, intron 30 of 34) L1PA3|LINE|L1 292296 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 302-238 chr2 180427479 180427706 + 2 NA Intergenic L1MA3|LINE|L1 -264512 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 211-109 chr17 19619536 19619687 + 2 NA Intergenic L2|LINE|L2 -28539 NM_001369137 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 255-322 chr5 33079166 33079360 + 2 NA Intergenic Intergenic 131820 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 243-30 chr10 9528186 9528423 + 2 NA Intergenic Intergenic -232711 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 300-259 chr22 29232131 29232298 + 2 NA intron (NM_001267895, intron 7 of 14) intron (NM_001267895, intron 7 of 14) 26318 NM_133455 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 307-466 chr7 136041577 136041860 + 2 NA Intergenic Intergenic -64359 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 312-367 chr4 43606877 43607127 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -114459 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 232-341 chr7 7479268 7479434 + 2 NA intron (NM_001037763, intron 13 of 34) intron (NM_001037763, intron 13 of 34) 56522 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 245-11 chr1 113453334 113453487 + 2 NA intron (NM_001142782, intron 1 of 20) Tigger13a|DNA|TcMar-Tigger 62895 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 221-220 chr4 72641993 72642154 + 2 NA Intergenic THE1-int|LTR|ERVL-MaLR -72852 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 308-231 chr2 80654914 80655108 + 2 NA Intergenic L1MB4|LINE|L1 341632 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 402-213 chr3 103595249 103595537 + 2 NA Intergenic HERVL-int|LTR|ERVL -71277 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 199-8 chr1 90237816 90237987 + 2 NA Intergenic L1MEf|LINE|L1 242791 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 523-42 chr10 85018789 85019140 + 2 NA Intergenic Intergenic 179941 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 293-342 chr5 80539164 80539452 + 2 NA intron (NM_205548, intron 5 of 5) intron (NM_205548, intron 5 of 5) 30972 NM_001004441 340120 Hs.519404 NM_001004441 ENSG00000189127 ANKRD34B DP58 ankyrin repeat domain 34B protein-coding 323-470 chr6 122243411 122243689 + 2 NA Intergenic L1M1|LINE|L1 -156001 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 328-624 chrX 41802798 41803058 + 2 NA intron (NM_003688, intron 2 of 26) L1M4b|LINE|L1 78747 NM_080817 27197 Hs.567457 NM_080817 ENSG00000171657 GPR82 - G protein-coupled receptor 82 protein-coding 280-158 chr17 21857017 21857194 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 164582 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 389-338 chr7 22319443 22319684 + 2 NA intron (NM_012294, intron 1 of 25) intron (NM_012294, intron 1 of 25) 37591 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 612-91 chr3 60527659 60528122 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 89980 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 605-101 chr6 67190469 67190943 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -864645 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 296-3 chr1 30337873 30338058 + 2 NA Intergenic MIRb|SINE|MIR -300353 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 519-248 chr9 16080003 16080409 + 2 NA Intergenic L3|LINE|CR1 172901 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 347-496 chr8 53161466 53161739 + 2 NA Intergenic L1PA16|LINE|L1 90035 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 605-124 chr8 131673337 131673925 + 2 NA Intergenic Intergenic -230462 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 263-235 chr20 54819395 54819627 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 343918 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 282-295 chr3 57253261 57253486 + 2 NA intron (NM_012096, intron 12 of 21) intron (NM_012096, intron 12 of 21) -16193 NR_135535 105377102 Hs.745243 NR_135535 LOC105377102 - uncharacterized LOC105377102 ncRNA 251-112 chr15 62708954 62709167 + 2 NA intron (NM_015059, intron 18 of 55) intron (NM_015059, intron 18 of 55) 61749 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 334-222 chr18 7938099 7938327 + 2 NA intron (NM_002845, intron 5 of 30) HAL1M8|LINE|L1 370897 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 400-30 chr10 31173720 31174014 + 2 NA Intergenic X6A_LINE|LINE|CR1 -14016 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 354-16 chr1 115251374 115251573 + 2 NA Intergenic L1MA9|LINE|L1 -31561 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 682-12 chr10 106367165 106367721 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR 227278 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 262-275 chr3 60032506 60032683 + 2 NA intron (NM_001320901, intron 2 of 6) L1MC5a|LINE|L1 48315 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 376-305 chr5 6442543 6442803 + 2 NA Intergenic L1PREC2|LINE|L1 -6186 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 257-428 chr8 139184287 139184474 + 2 NA Intergenic L1MA5A|LINE|L1 -270339 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 238-412 chr9 32310493 32310657 + 2 NA Intergenic L1MA2|LINE|L1 -74028 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 121-29 chr2 199705511 199705589 + 2 NA Intergenic L1MEc|LINE|L1 97482 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 358-69 chr11 70922708 70922891 + 2 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -50431 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 178-51 chr16 51890303 51890397 + 2 NA Intergenic L1ME1|LINE|L1 127831 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 520-207 chr4 33360855 33361223 + 2 NA Intergenic Intergenic 678854 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 336-25 chr1 79627771 79627989 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -621150 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 219-121 chr16 6598302 6598450 + 2 NA intron (NM_018723, intron 2 of 15) L1ME3G|LINE|L1 -175433 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 292-282 chr3 43378576 43378840 + 2 NA intron (NM_001204831, intron 11 of 12) intron (NM_001204831, intron 11 of 12) -26746 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 208-170 chr3 111033238 111033398 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 36641 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 217-25 chr1 231048024 231048167 + 2 NA Intergenic Intergenic -7841 NM_198552 375061 Hs.38516 NM_198552 ENSG00000182118 FAM89A C1orf153 family with sequence similarity 89 member A protein-coding 191-175 chr5 107452660 107452821 + 2 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 218197 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 350-341 chr4 35138390 35138737 + 2 NA Intergenic Intergenic -868816 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 534-112 chr2 56379830 56380217 + 2 NA intron (NM_001348513, intron 5 of 5) intron (NM_001348513, intron 5 of 5) -194253 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 211-12 chr1 158153859 158154019 + 2 NA Intergenic Intergenic -13299 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 307-298 chr3 40836147 40836332 + 2 NA Intergenic L1ME4a|LINE|L1 311279 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 273-341 chr4 171618767 171618958 + 2 NA intron (NR_147157, intron 3 of 4) L1PB4|LINE|L1 19901 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 206-156 chr3 52859234 52859370 + 2 NA intron (NM_001198974, intron 1 of 9) L1ME3G|LINE|L1 -12750 NR_107031 102465866 NR_107031 ENSG00000275789 MIR8064 hsa-mir-8064 microRNA 8064 ncRNA 762-38 chr2 142741635 142742205 + 2 NA Intergenic LTR40a|LTR|ERVL -135744 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 273-364 chr5 119726132 119726369 + 2 NA Intergenic L1MA5A|LINE|L1 96691 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 300-492 chr9 115815123 115815318 + 2 NA Intergenic Intergenic -70981 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 257-277 chr3 132280119 132280346 + 2 NA Intergenic Intergenic -37175 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 386-103 chr14 65474732 65475078 + 2 NA intron (NM_004480, intron 2 of 9) FLAM_C|SINE|Alu 3803 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 335-201 chr17 56429173 56429462 + 2 NA intron (NM_001370326, intron 8 of 20) L2a|LINE|L2 -164382 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 189-210 chr8 89307288 89307446 + 2 NA Intergenic Intergenic 450344 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 335-520 chr8 5292778 5293008 + 2 NA Intergenic MIR|SINE|MIR -297979 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 429-11 chr1 109673011 109673278 + 2 NA intron (NM_001142368, intron 7 of 8) AluSx|SINE|Alu 5087 NM_000848 2946 Hs.279837 NM_000848 ENSG00000213366 GSTM2 GST4|GSTM|GSTM2-2|GTHMUS glutathione S-transferase mu 2 protein-coding 304-218 chr18 78690917 78691082 + 2 NA Intergenic Intergenic -289276 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 283-328 chr4 71253210 71253373 + 2 NA intron (NM_001098484, intron 2 of 25) intron (NM_001098484, intron 2 of 25) 66005 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 338-417 chr5 22967342 22967636 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -114145 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 350-203 chr19 52781738 52782065 + 2 NA intron (NM_001321866, intron 1 of 5) AluSg|SINE|Alu 4890 NM_001321867 162966 Hs.696848 NM_198457 ENSG00000189190 ZNF600 KR-ZNF1 zinc finger protein 600 protein-coding 366-234 chr2 177074482 177074684 + 2 NA Intergenic Intergenic 137828 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 324-80 chr11 11958136 11958411 + 2 NA 3' UTR (NM_017944, exon 27 of 27) 3' UTR (NM_017944, exon 27 of 27) 50366 NM_001018057 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 264-441 chr9 60520052 60520311 + 2 NA Intergenic CER|Satellite|Satellite -394226 NM_015667 26165 Hs.123004 NM_015667 ENSG00000276040 SPATA31A7 AEP1|C9orf36|C9orf36A|FAM75A4|FAM75A7|SPATA31A4 SPATA31 subfamily A member 7 protein-coding 363-341 chr4 111703016 111703309 + 2 NA Intergenic Intergenic -442292 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 210-194 chr4 58395040 58395183 + 2 NA Intergenic MER6B|DNA|TcMar-Tigger 141217 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 567-184 chr8 83636104 83636664 + 2 NA Intergenic Intergenic 232626 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 290-440 chr8 10220579 10220732 + 2 NA intron (NM_001135670, intron 2 of 4) intron (NM_001135670, intron 2 of 4) 125004 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 476-284 chr9 72632163 72632561 + 2 NA intron (NM_138691, intron 4 of 23) MSTB|LTR|ERVL-MaLR 110561 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 430-257 chr6 15856140 15856421 + 2 NA Intergenic L1ME4a|LINE|L1 -193222 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 240-96 chr12 3778878 3779061 + 2 NA Intergenic L1ME1|LINE|L1 -25860 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 557-164 chr5 107180973 107181518 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -170231 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 320-126 chr12 100583271 100583434 + 2 NA intron (NM_001303130, intron 1 of 8) intron (NM_001303130, intron 1 of 8) 9668 NM_001363672 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 296-307 chr3 138547685 138547904 + 2 NA intron (NM_001288967, intron 2 of 13) MER44C|DNA|TcMar-Tigger 44162 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 238-228 chr3 20800417 20800633 + 2 NA Intergenic L1PREC2|LINE|L1 458057 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 417-45 chr11 4861084 4861342 + 2 NA promoter-TSS (NM_001348291) promoter-TSS (NM_001348291) -550 NM_001348291 401663 NM_001348291 OR51H1 OR51H1P olfactory receptor family 51 subfamily H member 1 protein-coding 1218-3 chr11 50437181 50437974 + 2 NA Intergenic AluY|SINE|Alu 28430 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 351-340 chr4 45302930 45303184 + 2 NA Intergenic Intergenic -576423 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 244-234 chr3 112159722 112159891 + 2 NA intron (NM_001320531, intron 25 of 27).2 L1MA4|LINE|L1 26383 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 400-247 chr4 58316679 58316981 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 219498 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 209-87 chr14 34347139 34347306 + 2 NA Intergenic MER57A-int|LTR|ERV1 115018 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 601-101 chr3 191530791 191531239 + 2 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) 69852 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 349-89 chr10 123791681 123791930 + 2 NA intron (NM_198148, intron 6 of 13) MLT1C|LTR|ERVL-MaLR 100002 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 248-291 chr4 136965389 136965601 + 2 NA intron (NR_149105, intron 2 of 3) intron (NR_149105, intron 2 of 3) -228261 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 209-21 chr1 218583456 218583604 + 2 NA intron (NR_031644, intron 2 of 6) L1ME2|LINE|L1 73435 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 261-41 chr10 78224905 78225073 + 2 NA Intergenic Intergenic -23636 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 512-293 chrX 91479200 91479541 + 2 NA Intergenic L1PA16|LINE|L1 -44371 NR_110659 102724167 Hs.571694 NR_110659 ENSG00000234161 PABPC5-AS1 CXorf46 PABPC5 antisense RNA 1 ncRNA 343-421 chr5 35845783 35846007 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -10996 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 328-36 chr1 218634756 218635044 + 2 NA intron (NR_031644, intron 3 of 6) L1MC5|LINE|L1 124805 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 324-159 chr14 58906951 58907132 + 2 NA intron (NR_110547, intron 2 of 5) L1PB4|LINE|L1 78753 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 325-47 chr10 4205075 4205258 + 2 NA Intergenic Intergenic 38746 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 332-440 chr5 164060335 164060568 + 2 NA Intergenic Intergenic 406951 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 430-159 chr2 145139466 145139852 + 2 NA Intergenic Intergenic 471692 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 134-77 chr6 107278210 107278325 + 2 NA intron (NM_020381, intron 2 of 7) intron (NM_020381, intron 2 of 7) -162752 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 358-344 chr4 112409416 112409618 + 2 NA intron (NM_001102406, intron 4 of 15) LTR79|LTR|ERVL -105862 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 379-371 chr9 7996779 7996978 + 2 NA Intergenic Intergenic -197100 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 178-143 chr8 81174491 81174617 + 2 NA Intergenic L2|LINE|L2 -62486 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 524-69 chr14 88423992 88424423 + 2 NA intron (NM_001040428, intron 4 of 10) intron (NM_001040428, intron 4 of 10) 38550 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 337-58 chr10 78314423 78314688 + 2 NA Intergenic Intergenic 47213 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 300-498 chrX 46490532 46490700 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 43319 NM_001129898 55634 Hs.632800 NM_017776 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 138-34 chr18 27785344 27785463 + 2 NA Intergenic Intergenic 251238 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 367-182 chr19 40045339 40045570 + 2 NA intron (NM_001005851, intron 4 of 4) L1MA4A|LINE|L1 10777 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 567-18 chr1 218246738 218247253 + 2 NA Intergenic Intergenic -38298 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 256-465 chrX 98308746 98308947 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -744311 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 355-506 chr8 104972246 104972476 + 2 NA Intergenic Intergenic -346077 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 454-350 chrX 78745583 78745980 + 2 NA Intergenic Intergenic -1928 NM_001278000 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 329-472 chr5 118306702 118306884 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 24219 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 369-235 chr2 239186125 239186491 + 2 NA intron (NM_006037, intron 4 of 26) intron (NM_006037, intron 4 of 26) 9149 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 451-162 chr4 71897502 71897759 + 2 NA Intergenic L1PA8|LINE|L1 -92110 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 308-365 chr4 186762959 186763224 + 2 NA Intergenic Intergenic -39235 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 333-405 chr4 96265147 96265356 + 2 NA Intergenic Intergenic -45452 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 305-91 chr11 26165823 26166033 + 2 NA Intergenic Intergenic -23195 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 296-245 chr2 157969245 157969438 + 2 NA Intergenic L1PB1|LINE|L1 -25838 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 981-2 chr10 66336477 66337034 + 2 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -589281 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 274-184 chr19 36913027 36913202 + 2 NA intron (NM_001037232, intron 3 of 5) intron (NM_001037232, intron 3 of 5) 2925 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 339-602 chr9 10262082 10262281 + 2 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 350821 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 230-357 chr7 82850582 82850778 + 2 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 312204 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 281-152 chr16 77502775 77503004 + 2 NA Intergenic Intergenic -67855 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 276-211 chr2 2407410 2407596 + 2 NA Intergenic L1MA6|LINE|L1 -76228 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 375-70 chr11 27078763 27079134 + 2 NA intron (NR_125767, intron 3 of 4) MIRb|SINE|MIR 38133 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 209-118 chr16 73450618 73450760 + 2 NA Intergenic Intergenic 63884 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 280-405 chr8 70893024 70893278 + 2 NA Intergenic L1MA5|LINE|L1 223812 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 240-50 chr10 57711192 57711334 + 2 NA Intergenic L1MA7|LINE|L1 -406704 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 343-403 chr4 138072674 138072962 + 2 NA intron (NR_037866, intron 7 of 10) intron (NR_037866, intron 7 of 10) -16196 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 177-119 chr4 93666372 93666518 + 2 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -162308 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 422-183 chr3 63549338 63549599 + 2 NA intron (NM_001130003, intron 3 of 5) MIRb|SINE|MIR 583 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 339-588 chr8 121877815 121878064 + 2 NA Intergenic Intergenic -236499 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 371-406 chr9 7882922 7883196 + 2 NA Intergenic L1PA8|LINE|L1 -83281 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 266-195 chr2 155503741 155503906 + 2 NA Intergenic L1PA16|LINE|L1 751108 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 162-116 chr6 168980694 168980847 + 2 NA Intergenic L1M2|LINE|L1 -16388 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 298-136 chr15 26381059 26381316 + 2 NA Intergenic Intergenic 247903 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 366-233 chr2 169013772 169014124 + 2 NA intron (NM_003742, intron 4 of 27) intron (NM_003742, intron 4 of 27) 17376 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 358-35 chr10 24598410 24598709 + 2 NA intron (NM_001367447, intron 13 of 24) intron (NM_001367447, intron 13 of 24) 24284 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 240-104 chr12 28908784 28909005 + 2 NA Intergenic L2a|LINE|L2 -240384 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 547-157 chr4 54450204 54450592 + 2 NA Intergenic MER11B|LTR|ERVK 117506 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 331-214 chr18 12113129 12113297 + 2 NA intron (NM_001277333, intron 8 of 13) L1PA13|LINE|L1 19370 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 586-3 chr1 30694869 30695298 + 2 NA Intergenic Intergenic -23689 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 197-174 chr5 118908947 118909101 + 2 NA intron (NM_001308081, intron 4 of 5) intron (NM_001308081, intron 4 of 5) -65562 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 562-43 chr12 13029690 13030057 + 2 NA Intergenic Intergenic -14508 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 237-166 chr2 34282108 34282312 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 214984 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 272-236 chr2 238764559 238764742 + 2 NA Intergenic Intergenic 83257 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 237-369 chr8 49307077 49307298 + 2 NA Intergenic LTR12D|LTR|ERV1 204993 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 466-111 chr19 30272270 30272585 + 2 NA Intergenic L1MC2|LINE|L1 -99957 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 428-271 chr7 20210992 20211342 + 2 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 6217 NM_182762 346389 Hs.598388 NM_182762 ENSG00000183742 MACC1 7A5|SH3BP4L MET transcriptional regulator MACC1 protein-coding 185-124 chr21 30509048 30509169 + 2 NA Intergenic Intergenic -6967 NM_181611 337972 Hs.553694 NM_181611 ENSG00000186977 KRTAP19-5 KAP19.5 keratin associated protein 19-5 protein-coding 151-36 chr2 75176343 75176440 + 2 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 23129 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 361-241 chr2 177651731 177651942 + 2 NA intron (NM_001077197, intron 20 of 20) intron (NM_001077197, intron 20 of 20) -21486 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 333-287 chr2 211788319 211788625 + 2 NA intron (NM_001042599, intron 3 of 26) L1ME4a|LINE|L1 637888 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 238-326 chr6 69389974 69390171 + 2 NA TTS (NM_001704) TTS (NM_001704) 406394 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 248-220 chr20 39396863 39397012 + 2 NA Intergenic L2b|LINE|L2 -172189 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 229-127 chr15 81427044 81427198 + 2 NA intron (NR_120365, intron 6 of 6) LTR37B|LTR|ERV1 -52908 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 424-144 chr2 146869023 146869253 + 2 NA Intergenic Intergenic 282081 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 275-359 chr8 69682064 69682248 + 2 NA intron (NM_001146009, intron 5 of 7) intron (NM_001146009, intron 5 of 7) 89256 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 298-200 chr2 21945243 21945514 + 2 NA Intergenic Intergenic -234726 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 361-148 chr14 87907824 87908177 + 2 NA Intergenic Intergenic 85182 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 377-301 chr5 5154023 5154317 + 2 NA intron (NM_139056, intron 3 of 22) intron (NM_139056, intron 3 of 22) 13840 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 459-92 chr15 54623172 54623483 + 2 NA intron (NM_001329919, intron 30 of 31) intron (NM_001329919, intron 30 of 31) -433420 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 329-57 chr10 61328705 61328875 + 2 NA Intergenic L1MC1|LINE|L1 -123849 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 284-307 chr5 8040426 8040701 + 2 NA Intergenic L1PA15|LINE|L1 171415 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 389-145 chr18 36609116 36609395 + 2 NA intron (NM_001281740, intron 8 of 28) intron (NM_001281740, intron 8 of 28) 54163 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 291-109 chr13 34602612 34602771 + 2 NA intron (NR_047036, intron 1 of 2) AluSx1|SINE|Alu 37994 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 317-494 chr8 107190867 107191036 + 2 NA Intergenic Intergenic 145564 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 361-114 chr12 81658704 81658977 + 2 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) -60469 NM_001220477 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 382-167 chr19 58075409 58075719 + 2 NA Intergenic Intergenic 16282 NM_003436 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 363-28 chr1 217125584 217125872 + 2 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) 11974 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 286-307 chr4 35222376 35222636 + 2 NA Intergenic Intergenic -952759 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 377-377 chr7 73641788 73642087 + 2 NA Intergenic MER21B|LTR|ERVL -17415 NR_134541 51085 Hs.647055 NM_032951 ENSG00000009950 MLXIPL CHREBP|MIO|MLX|MONDOB|WBSCR14|WS-bHLH|bHLHd14 MLX interacting protein like protein-coding 132-91 chr8 110540724 110540827 + 2 NA Intergenic L1MC5|LINE|L1 486658 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 406-57 chr12 17776342 17776675 + 2 NA Intergenic L2a|LINE|L2 103209 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 368-384 chr5 178676377 178676614 + 2 NA Intergenic L1MD2|LINE|L1 -49445 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 431-312 chr8 140205203 140205434 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -104783 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 218-237 chr4 44227799 44227934 + 2 NA intron (NM_198353, intron 1 of 1) L2b|LINE|L2 210804 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 315-77 chr11 9564482 9564715 + 2 NA Intergenic AluSz|SINE|Alu -9072 NM_003390 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 510-200 chr4 36280993 36281401 + 2 NA promoter-TSS (NR_160267) promoter-TSS (NR_160267) -419 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 274-130 chr14 64941529 64941709 + 2 NA intron (NR_138078, intron 1 of 2) intron (NR_138078, intron 1 of 2) 1126 NM_002083 2877 Hs.2704 NM_002083 ENSG00000176153 GPX2 GI-GPx|GPRP|GPRP-2|GPx-2|GPx-GI|GSHPX-GI|GSHPx-2 glutathione peroxidase 2 protein-coding 339-582 chr8 107696112 107696289 + 2 NA Intergenic Intergenic -198282 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 501-237 chr7 14024926 14025275 + 2 NA Intergenic HAL1|LINE|L1 -33675 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 296-75 chr11 34281686 34281912 + 2 NA intron (NM_145804, intron 1 of 16) intron (NM_145804, intron 1 of 16) 76211 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 501-12 chr1 167908851 167909166 + 2 NA intron (NM_018417, intron 1 of 32) L1ME3A|LINE|L1 5126 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 255-198 chr2 79126205 79126420 + 2 NA Intergenic L1M4b|LINE|L1 5824 NM_002909 5967 Hs.49407 NM_002909 ENSG00000115386 REG1A ICRF|P19|PSP|PSPS|PSPS1|PTP|REG regenerating family member 1 alpha protein-coding 375-356 chr6 93715801 93715990 + 2 NA intron (NR_015362, intron 1 of 9) L1MA9|LINE|L1 -2408 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 245 chr1 3445625 3445790 + 2 NA Intergenic L1MEc|LINE|L1 -8958 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 323-238 chr2 41784952 41785209 + 2 NA Intergenic MIR3|SINE|MIR -92475 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 140-35 chr19 44289591 44289698 + 2 NA intron (NM_004234, intron 4 of 4) intron (NM_004234, intron 4 of 4) 15381 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 256-347 chr5 163609365 163609589 + 2 NA Intergenic Intergenic 103858 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 244-173 chr2 122778540 122778728 + 2 NA Intergenic Intergenic 294847 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 206-5 chr1 43019118 43019239 + 2 NA Intergenic Intergenic 60129 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 797-15 chr14 19926119 19926699 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 5802 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 264-391 chr7 87301149 87301383 + 2 NA Intergenic L1PA15|LINE|L1 44226 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 807-24 chr2 22857753 22858359 + 2 NA Intergenic Intergenic 321577 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 297-247 chr2 213343466 213343644 + 2 NA intron (NR_047660, intron 5 of 14) L1MEc|LINE|L1 59091 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 390-320 chr6 49595891 49596142 + 2 NA Intergenic L2c|LINE|L2 40858 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 412-24 chr10 32903761 32904044 + 2 NA intron (NM_002211, intron 15 of 15) intron (NM_002211, intron 15 of 15) -2430 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 429-317 chr8 139537497 139537776 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 165487 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 205-100 chr15 67950850 67950998 + 2 NA Intergenic AluJr|SINE|Alu -103255 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 356-345 chr4 18386456 18386679 + 2 NA Intergenic L1ME1|LINE|L1 -364692 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 362-413 chr7 110779661 110779881 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -311235 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 229-329 chr5 175498546 175498721 + 2 NA intron (NM_001322982, intron 2 of 10) L1M6|LINE|L1 20073 NM_001322978 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 409-30 chr10 66367508 66367844 + 2 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -558360 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 141-35 chr2 6066944 6067028 + 2 NA Intergenic Intergenic 85008 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 545-232 chr8 46536585 46537000 + 2 NA Intergenic ALR/Alpha|Satellite|centr 80851 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 250-159 chr17 34092532 34092687 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 64197 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 586-17 chr1 228888106 228888611 + 2 NA Intergenic L1MC4|LINE|L1 152879 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 203-163 chr4 38582051 38582221 + 2 NA Intergenic Intergenic 18133 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 415-274 chr8 43611127 43611534 + 2 NA Intergenic ALR/Alpha|Satellite|centr 318888 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 334-507 chr7 112627783 112628046 + 2 NA intron (NR_110158, intron 1 of 7) intron (NR_110158, intron 1 of 7) 5533 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 214-270 chr5 152172577 152172777 + 2 NA intron (NR_109876, intron 1 of 2) HAL1|LINE|L1 213779 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 423-199 chr4 74280553 74280864 + 2 NA intron (NR_147097, intron 8 of 9) intron (NR_147097, intron 8 of 9) -27762 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 275-214 chr2 199159896 199160101 + 2 NA Intergenic Intergenic 297941 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 391-30 chr1 224596580 224596854 + 2 NA intron (NR_136294, intron 4 of 8) MER21A|LTR|ERVL -19600 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 281-130 chr14 95269144 95269332 + 2 NA intron (NM_024734, intron 1 of 12) intron (NM_024734, intron 1 of 12) 50670 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 671-3 chr1 56405042 56405584 + 2 NA Intergenic MIRb|SINE|MIR -9650 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 399-291 chr7 110156171 110156508 + 2 NA Intergenic Intergenic -196126 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 311-522 chr8 123386775 123387036 + 2 NA intron (NM_014109, intron 1 of 27) intron (NM_014109, intron 1 of 27) 9542 NM_014109 29028 Hs.370834 NM_014109 ENSG00000156802 ATAD2 ANCCA|CT137|PRO2000 ATPase family AAA domain containing 2 protein-coding 306-129 chr13 79825012 79825265 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 20752 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 265-365 chr7 96575949 96576165 + 2 NA intron (NR_163950, intron 3 of 6) L1M4|LINE|L1 -72534 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 300-345 chr5 10923782 10924037 + 2 NA Intergenic Intergenic -162675 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 375-245 chr21 32202675 32202944 + 2 NA Intergenic L1MB3|LINE|L1 76240 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 448-263 chr7 74717448 74717891 + 2 NA TTS (NM_001280800) TTS (NM_001280800) 11249 NR_110044 101926943 Hs.654772 NR_110044 ENSG00000232729 LOC101926943 - uncharacterized LOC101926943 ncRNA 262-424 chr8 65885536 65885742 + 2 NA Intergenic Intergenic -43575 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 624-28 chr12 34488105 34488637 + 2 NA Intergenic ALR/Alpha|Satellite|centr 465875 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 347-57 chr10 77367381 77367597 + 2 NA intron (NR_126365, intron 3 of 5) MER5A1|DNA|hAT-Charlie 16617 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 317-352 chr4 61010221 61010428 + 2 NA Intergenic L1ME2|LINE|L1 87705 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 498-93 chr14 87600502 87600908 + 2 NA Intergenic Intergenic 54589 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 422-96 chr15 61764821 61765192 + 2 NA Intergenic Intergenic 35088 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 475-180 chr3 59324277 59324666 + 2 NA Intergenic Intergenic -274439 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 728-35 chr14 82274880 82275495 + 2 NA Intergenic MER4D1|LTR|ERV1 -367445 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 396-138 chr18 77154031 77154371 + 2 NA Intergenic L1ME4b|LINE|L1 -21418 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 342-283 chr20 38680727 38680953 + 2 NA Intergenic Intergenic -43646 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 381-10 chr1 102495041 102495320 + 2 NA Intergenic Intergenic -497946 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 333-412 chr4 132486938 132487128 + 2 NA Intergenic Intergenic -104056 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 297-148 chr15 60179958 60180184 + 2 NA Intergenic Intergenic 175760 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 390-87 chr14 37686156 37686435 + 2 NA intron (NM_001310135, intron 5 of 32) MIR|SINE|MIR -86088 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 237-278 chr4 173850838 173851007 + 2 NA Intergenic Intergenic -46351 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 319-413 chr5 64671442 64671614 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -18975 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 197-10 chr1 98100353 98100529 + 2 NA Intergenic Intergenic -50748 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 518-170 chr22 49103805 49104258 + 2 NA Intergenic Intergenic 237261 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 204-231 chr5 15549741 15549862 + 2 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 48363 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 204-226 chr4 172860756 172860922 + 2 NA intron (NM_001034845, intron 7 of 12) intron (NM_001034845, intron 7 of 12) -133961 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 163-48 chr15 79573586 79573705 + 2 NA Intergenic MIRb|SINE|MIR 141129 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 325-213 chr17 17649692 17649973 + 2 NA Intergenic AluJr4|SINE|Alu 27856 NR_131243 105371564 Hs.369680 NR_131243 ENSG00000223979 SMCR2 TCONS_00025215 Smith-Magenis syndrome chromosome region, candidate 2 ncRNA 339-139 chr13 57562044 57562265 + 2 NA Intergenic Intergenic -69590 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 384-242 chr3 169254114 169254396 + 2 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -106784 NM_001366474 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 331-419 chr5 59696712 59697036 + 2 NA intron (NM_001165899, intron 3 of 16) L2a|LINE|L2 6829 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 298-58 chr10 104653373 104653597 + 2 NA intron (NM_014978, intron 1 of 26) HAL1|LINE|L1 12195 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 320-66 chr10 90160212 90160423 + 2 NA Intergenic Intergenic -202944 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 316-351 chr3 79488442 79488677 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -19328 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 379-160 chr2 75091324 75091549 + 2 NA TTS (NR_049796) TTS (NR_049796) 624 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 406-227 chr5 42246480 42246722 + 2 NA Intergenic L2c|LINE|L2 -71256 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 367-250 chr20 43353510 43353790 + 2 NA Intergenic Intergenic -104246 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 363-7 chr1 76403212 76403485 + 2 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 328602 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 451-39 chr11 98525656 98526053 + 2 NA Intergenic LTR1E|LTR|ERV1 -495095 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 391-50 chr10 122446102 122446339 + 2 NA Intergenic LTR88a|LTR|Gypsy? -8433 NM_001099667 387715 Hs.120359 NM_001099667 ENSG00000254636 ARMS2 ARMD8 age-related maculopathy susceptibility 2 protein-coding 706-6 chr10 65287352 65287918 + 2 NA Intergenic Intergenic -283790 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 212-142 chr2 13829663 13829868 + 2 NA Intergenic L1ME3A|LINE|L1 571193 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 318-471 chr6 27397913 27398176 + 2 NA intron (NM_001322288, intron 2 of 3) intron (NM_001322288, intron 2 of 3) 9326 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 270-394 chr8 107207700 107207878 + 2 NA Intergenic MIR|SINE|MIR 128726 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 158-23 chr12 66137772 66137879 + 2 NA 3' UTR (NM_001282606, exon 8 of 8) 3' UTR (NM_001282606, exon 8 of 8) 7074 NR_125724 103625681 Hs.504820 NR_125724 ENSG00000239335 LLPH-DT LLPH-AS1 LLPH divergent transcript ncRNA 343-521 chr7 113760852 113761078 + 2 NA Intergenic Intergenic 158044 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 481-52 chr11 43623300 43623633 + 2 NA Intergenic Intergenic 42072 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 220-137 chr17_GL000205v2_random 29774 29938 + 2 NA Intergenic CER|Satellite|Satellite 28110 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 214-26 chr1 214141305 214141474 + 2 NA Intergenic L1MA6|LINE|L1 -139770 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 240-324 chr4 84638598 84638785 + 2 NA intron (NM_001263, intron 8 of 12) intron (NM_001263, intron 8 of 12) 55564 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 157-84 chr3 87700948 87701075 + 2 NA Intergenic Intergenic -91695 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 156-109 chr8 134891939 134892036 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 42052 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 527-280 chr9 29030219 29030591 + 2 NA intron (NM_001354574, intron 1 of 5) L1MD3|LINE|L1 -141450 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 367-268 chr22 43194482 43194756 + 2 NA Intergenic L1PB1|LINE|L1 -7485 NM_015140 23170 Hs.517670 NM_015140 ENSG00000100304 TTLL12 dJ526I14.2 tubulin tyrosine ligase like 12 protein-coding 412-302 chr7 25223151 25223508 + 2 NA Intergenic Intergenic 5157 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 309-377 chr4 15588037 15588245 + 2 NA intron (NM_001080522, intron 33 of 37) intron (NM_001080522, intron 33 of 37) 67216 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 458-252 chr8 78120480 78120788 + 2 NA Intergenic Intergenic -395706 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 193-136 chr3 6128954 6129107 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 676419 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 229-116 chr14 60054205 60054380 + 2 NA intron (NR_075071, intron 30 of 32) Tigger13a|DNA|TcMar-Tigger -37619 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 236-327 chr7 48834934 48835097 + 2 NA Intergenic Intergenic -89532 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 636-121 chr6 16792179 16792620 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -30909 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 527-130 chr2 77363524 77363858 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 158685 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 311-493 chr8 36921234 36921507 + 2 NA intron (NM_001031836, intron 23 of 26) LTR40b|LTR|ERVL 136996 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 206-23 chr1 237567044 237567242 + 2 NA intron (NM_001035, intron 28 of 104) intron (NM_001035, intron 28 of 104) 96024 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 360-410 chr6 74511132 74511410 + 2 NA intron (NR_110856, intron 2 of 3) L1MA6|LINE|L1 441820 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 352-77 chr11 50373613 50373838 + 2 NA Intergenic ALR/Alpha|Satellite|centr -35422 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 392-114 chr17 69027193 69027558 + 2 NA exon (NM_080283, exon 14 of 39) exon (NM_080283, exon 14 of 39) 22661 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 532-28 chr11 4436354 4436802 + 2 NA Intergenic MIRb|SINE|MIR -12717 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 531-80 chr16 74004211 74004614 + 2 NA Intergenic L1M2|LINE|L1 211109 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 359-152 chr15 56549676 56549998 + 2 NA Intergenic Intergenic -84700 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 239-346 chr6 38958768 38958979 + 2 NA intron (NM_001371, intron 81 of 91) L1MA6|LINE|L1 -5766 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 550-30 chr10 58462915 58463393 + 2 NA Intergenic L1MA1|LINE|L1 -49718 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 257-365 chr6 132478958 132479206 + 2 NA intron (NM_001326579, intron 2 of 9) ERVL-B4-int|LTR|ERVL 33701 NM_001326578 8417 Hs.593148 NM_003569 ENSG00000079950 STX7 - syntaxin 7 protein-coding 218-71 chr12 72460746 72460860 + 2 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -187294 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 313-377 chr4 37519806 37520021 + 2 NA intron (NM_001104629, intron 1 of 3) L1MA1|LINE|L1 -64320 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 182-127 chr4 140948243 140948377 + 2 NA intron (NM_020724, intron 3 of 6) Charlie23a|DNA|hAT-Charlie 185159 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 259-145 chr16 13036845 13036988 + 2 NA intron (NM_001145204, intron 2 of 4) MIR|SINE|MIR 135318 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 369-438 chr9 9537700 9538036 + 2 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -261524 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 303-227 chr2 153661134 153661429 + 2 NA Intergenic Intergenic -182519 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 361-155 chr15 57481552 57481770 + 2 NA intron (NM_032866, intron 8 of 18) L1MD1|LINE|L1 105156 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 244-311 chr5 148535437 148535671 + 2 NA intron (NM_001040172, intron 3 of 5) L1PA14|LINE|L1 101507 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 266-345 chr5 141163353 141163582 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 7468 NR_001280 54661 Hs.284307 NR_001280 ENSG00000255622 PCDHB17P ME4|PCDH-psi1|PCDHB17 protocadherin beta 17 pseudogene pseudo 219-288 chr5 80854433 80854611 + 2 NA intron (NM_002439, intron 21 of 23) L1MA7|LINE|L1 -105841 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 319-31 chr1 175337084 175337265 + 2 NA intron (NM_003285, intron 19 of 22) AluSz|SINE|Alu -144187 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 327-46 chr10 52690591 52690883 + 2 NA intron (NR_155748, intron 1 of 2) MER4D1|LTR|ERV1 64667 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 274-118 chr14 40268312 40268474 + 2 NA Intergenic Intergenic -686318 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 450-105 chr16 71701453 71701825 + 2 NA intron (NM_015020, intron 3 of 18) intron (NM_015020, intron 3 of 18) -2938 NR_033337 100379141 Hs.725116 NR_033337 ENSG00000263666 SNORA70D U70D small nucleolar RNA, H/ACA box 70D snoRNA 349-395 chr4 184885517 184885706 + 2 NA Intergenic Intergenic 13850 NR_039975 100506229 Hs.378150 NR_039975 LINC01093 - long intergenic non-protein coding RNA 1093 ncRNA 390-377 chr8 79188011 79188347 + 2 NA Intergenic Intergenic -144009 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 441-242 chr7 20586016 20586304 + 2 NA Intergenic Intergenic -29507 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 416-163 chr2 37649136 37649429 + 2 NA intron (NM_001270436, intron 1 of 1) AluJr|SINE|Alu 22917 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 327-16 chr1 118812323 118812631 + 2 NA Intergenic Intergenic 175866 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 631-23 chr10 107440004 107440356 + 2 NA Intergenic L1M5|LINE|L1 -275474 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 295-444 chr7 68874221 68874381 + 2 NA Intergenic Intergenic 723323 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 368-186 chr16 86715260 86715602 + 2 NA Intergenic Intergenic 6528 NR_135181 101928614 Hs.399823 NR_135181 ENSG00000260026 LINC02189 - long intergenic non-protein coding RNA 2189 ncRNA 347-339 chr4 38658595 38658835 + 2 NA intron (NR_026804, intron 1 of 7) intron (NR_026804, intron 1 of 7) -5484 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 195-48 chr12 19629444 19629581 + 2 NA Intergenic MIR|SINE|MIR 188913 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 449-293 chr9 81423219 81423572 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 266140 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 302-144 chr15 55018613 55018855 + 2 NA Intergenic Intergenic -38013 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 379-283 chr6 33868160 33868383 + 2 NA Intergenic Intergenic 28636 NR_038989 100507584 Hs.547104 NR_038989 ENSG00000249346 LINC01016 - long intergenic non-protein coding RNA 1016 ncRNA 686-40 chr2 60152493 60152958 + 2 NA Intergenic Intergenic 230311 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 563-93 chr2 151696856 151697411 + 2 NA intron (NM_001271208, intron 16 of 182) intron (NM_001271208, intron 16 of 182) 37343 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 379-233 chr4 60898133 60898391 + 2 NA Intergenic Intergenic -24357 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 306-159 chr14 97745756 97745913 + 2 NA Intergenic L1ME2z|LINE|L1 16997 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 446-284 chr7 94521223 94521578 + 2 NA intron (NM_001363428, intron 3 of 17) L1MEd|LINE|L1 11591 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 376-204 chr2 204397588 204397777 + 2 NA Intergenic L1MC1|LINE|L1 -147793 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 247-190 chr2 50049089 50049240 + 2 NA intron (NM_001330093, intron 21 of 22) MER94|DNA|hAT-Blackjack -74961 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 333-311 chr20 51797189 51797382 + 2 NA intron (NM_001318031, intron 1 of 3) Charlie4a|DNA|hAT-Charlie 5236 NM_020436 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 542-199 chr7 34014882 34015257 + 2 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 109530 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 402-192 chr21 26780215 26780601 + 2 NA Intergenic Intergenic 65001 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 340-168 chr15 49663728 49663909 + 2 NA Intergenic Intergenic 42770 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 361-219 chr2 80890338 80890606 + 2 NA Intergenic LTR16C|LTR|ERVL 576474 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 511-136 chr2 188608173 188608554 + 2 NA Intergenic Intergenic 181760 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 141-45 chr20 43639005 43639119 + 2 NA intron (NM_001303459, intron 12 of 12) L1ME4b|LINE|L1 -27957 NM_001278610 4605 Hs.179718 NM_002466 ENSG00000101057 MYBL2 B-MYB|BMYB MYB proto-oncogene like 2 protein-coding 328-372 chr3 153346248 153346421 + 2 NA Intergenic LTR33A|LTR|ERVL -138161 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 309-280 chr2 154866921 154867205 + 2 NA Intergenic Intergenic 168368 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 364-109 chr12 90276175 90276409 + 2 NA Intergenic Intergenic -17026 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 257-285 chr3 186459758 186459927 + 2 NA intron (NR_033844, intron 3 of 7) L2b|LINE|L2 19497 NR_151708 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 479-88 chr18 61664149 61664479 + 2 NA Intergenic Intergenic -83862 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 276-166 chr15 67485143 67485296 + 2 NA intron (NR_147832, intron 15 of 17) L1MEg|LINE|L1 35754 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 337-404 chr4 92684167 92684471 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 379920 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 417-86 chr14 65496973 65497292 + 2 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 26030 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 325-360 chr3 119800173 119800492 + 2 NA intron (NM_022002, intron 1 of 8) L1MB8|LINE|L1 17622 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 194-14 chr1 174199263 174199438 + 2 NA intron (NM_001366445, intron 1 of 13) AluSz|SINE|Alu 39830 NM_001366446 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 244-55 chr11 59931221 59931432 + 2 NA Intergenic Intergenic -11553 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 354-159 chr15 87077549 87077787 + 2 NA Intergenic Intergenic -89242 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 328-375 chr3 170780698 170780971 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 89361 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 498-283 chr8 127781644 127782027 + 2 NA Intergenic L2a|LINE|L2 -12698 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 257-301 chr4 67099661 67099826 + 2 NA Intergenic Intergenic 322257 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 386-377 chr9 69878008 69878330 + 2 NA intron (NM_001308084, intron 4 of 4) intron (NM_001308084, intron 4 of 4) 57352 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 600-109 chr6 70922106 70922499 + 2 NA intron (NM_080742, intron 1 of 3) L1M5|LINE|L1 34758 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 143-19 chr12 99067637 99067739 + 2 NA intron (NM_152788, intron 16 of 25) intron (NM_152788, intron 16 of 25) -25671 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 254-141 chr16 74145519 74145692 + 2 NA Intergenic MER5C1|DNA|hAT-Charlie 69916 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 302-442 chr8 64884369 64884628 + 2 NA Intergenic L1MCc|LINE|L1 -85761 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 237-208 chr20 19303491 19303648 + 2 NA intron (NM_020689, intron 2 of 16) L1PA15|LINE|L1 -18973 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 243-115 chr13 104874275 104874456 + 2 NA Intergenic Intergenic -591502 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 341-519 chr8 63618728 63618949 + 2 NA Intergenic L2a|LINE|L2 -150592 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 475-146 chr2 144119100 144119522 + 2 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 92268 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 382-377 chr7 33141316 33141550 + 2 NA intron (NM_001348044, intron 1 of 18) intron (NM_001348044, intron 1 of 18) 11869 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 225-220 chr3 113486536 113486705 + 2 NA intron (NM_001331078, intron 7 of 17) L1MC4|LINE|L1 28224 NM_001331079 152185 Hs.477144 NM_144718 ENSG00000163611 SPICE1 CCDC52|SPICE spindle and centriole associated protein 1 protein-coding 334-585 chrX 65192443 65192718 + 2 NA Intergenic L1M1|LINE|L1 -157839 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 357-160 chr18 345515 345823 + 2 NA intron (NM_130386, intron 5 of 9) intron (NM_130386, intron 5 of 9) -77622 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 773-37 chr5 109243581 109244113 + 2 NA intron (NR_149040, intron 3 of 3) HAL1ME|LINE|L1 82522 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 426-9 chr1 85087799 85088061 + 2 NA intron (NM_001288563, intron 7 of 21) intron (NM_001288563, intron 7 of 21) 25603 NM_145172 126820 Hs.97933 NM_145172 ENSG00000162643 WDR63 DIC3|NYD-SP29 WD repeat domain 63 protein-coding 660-65 chr3 89473530 89474122 + 2 NA intron (NM_005233, intron 16 of 16) intron (NM_005233, intron 16 of 16) 366205 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 275-56 chr11 10432279 10432478 + 2 NA Intergenic L1MB7|LINE|L1 -17943 NM_001172431 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 486-132 chr2 33696107 33696398 + 2 NA Intergenic Intergenic -10634 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 282-469 chr8 129586302 129586538 + 2 NA intron (NR_130917, intron 1 of 3) L1MC4|LINE|L1 -11402 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 274-163 chr17 55925661 55925843 + 2 NA Intergenic Intergenic 174647 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 486-103 chr16 23157010 23157407 + 2 NA Intergenic L2a|LINE|L2 -7938 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 337-82 chr11 36004561 36004852 + 2 NA intron (NM_001304264, intron 1 of 5) MSTA-int|LTR|ERVL-MaLR -5392 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 307-179 chr16 77386747 77386986 + 2 NA intron (NM_199355, intron 3 of 22) intron (NM_199355, intron 3 of 22) 48168 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 380-264 chr3 179103357 179103702 + 2 NA intron (NR_125401, intron 2 of 2) AluJr4|SINE|Alu -31720 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 585-96 chr3 21216569 21217025 + 2 NA Intergenic Intergenic -188929 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 520-218 chr4 96521373 96521818 + 2 NA intron (NR_147149, intron 2 of 3) LTR12C|LTR|ERV1 210892 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 746-52 chr3 127942384 127942905 + 2 NA intron (NM_001370224, intron 4 of 6) intron (NM_001370224, intron 4 of 6) 27412 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 366-201 chr2 79520979 79521219 + 2 NA intron (NM_001164883, intron 1 of 16) intron (NM_001164883, intron 1 of 16) -2084 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 324-347 chr3 70811957 70812149 + 2 NA Intergenic Intergenic 252871 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 206-160 chr3 69969640 69969794 + 2 NA Intergenic MER113A|DNA|hAT-Charlie -30027 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 121-4 chr11 21237418 21237529 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 567887 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 215-220 chr4 56370780 56370968 + 2 NA intron (NM_001286672, intron 5 of 10) intron (NM_001286672, intron 5 of 10) 16617 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 549-98 chr19 56446806 56447280 + 2 NA intron (NM_022103, intron 4 of 4) intron (NM_022103, intron 4 of 4) 30302 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 229-248 chr3 60115888 60116113 + 2 NA intron (NM_001320900, intron 6 of 9) L1ME4a|LINE|L1 -35091 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 354-326 chr4 57877098 57877304 + 2 NA Intergenic Intergenic 451329 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 330-341 chr3 27212280 27212607 + 2 NA intron (NM_152534, intron 24 of 38) intron (NM_152534, intron 24 of 38) 4080 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 478-69 chr13 76809428 76809712 + 2 NA Intergenic Intergenic 76835 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 835-33 chr2 206281458 206281950 + 2 NA intron (NM_001369654, intron 3 of 5) intron (NM_001369654, intron 3 of 5) 6694 NM_001285549 57683 Hs.110489 NM_020923 ENSG00000204186 ZDBF2 Slx9 zinc finger DBF-type containing 2 protein-coding 360-260 chr20 9777023 9777292 + 2 NA intron (NM_177990, intron 1 of 9) FLAM_A|SINE|Alu 61919 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 527-129 chr2 65723019 65723451 + 2 NA Intergenic Intergenic -290636 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 393-25 chr1 208927598 208927815 + 2 NA Intergenic Intergenic -44748 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 257-178 chr2 29152004 29152186 + 2 NA intron (NM_001287528, intron 8 of 14) intron (NM_001287528, intron 8 of 14) 36680 NM_001287527 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 751-11 chr12 23809509 23809922 + 2 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 139955 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 476-4 chr1 70670446 70670753 + 2 NA Intergenic Intergenic -35854 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 246-8 chr1 98507436 98507564 + 2 NA Intergenic L1MA4|LINE|L1 -154221 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 345-461 chr6 40540190 40540389 + 2 NA intron (NM_020737, intron 1 of 2) MIR|SINE|MIR 47075 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 286-187 chr2 9073948 9074153 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -70366 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 485-173 chr3 2944176 2944548 + 2 NA intron (NM_175607, intron 13 of 24) intron (NM_175607, intron 13 of 24) 52147 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 380-24 chr1 165267334 165267601 + 2 NA intron (NM_177398, intron 3 of 8) L1MB5|LINE|L1 88774 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 313-39 chr10 30495723 30496023 + 2 NA Intergenic Intergenic 61227 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 263-120 chr15 70939921 70940120 + 2 NA intron (NM_017691, intron 8 of 15) intron (NM_017691, intron 8 of 15) 47577 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 398-206 chr3 83822152 83822367 + 2 NA Intergenic Intergenic 1047316 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 453-134 chr2 210288872 210289178 + 2 NA Intergenic MER3|DNA|hAT-Charlie 14590 NM_079422 4632 Hs.187338 NM_079420 ENSG00000168530 MYL1 MLC1F|MLC3F|MYOFTA myosin light chain 1 protein-coding 260-362 chr5 150886162 150886361 + 2 NA intron (NM_001346557, intron 3 of 3) L1PREC2|LINE|L1 18722 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 247-87 chr12 44277112 44277293 + 2 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 441121 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 355-103 chr11 96630776 96631087 + 2 NA Intergenic Intergenic 122506 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 352-206 chr19 29168824 29169060 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 44209 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 476-96 chr15 86757808 86758168 + 2 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -174892 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 476-7 chr1 90914380 90914629 + 2 NA TTS (NM_016620) TTS (NM_016620) 62745 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 506-207 chr4 85197217 85197540 + 2 NA Intergenic L1M1|LINE|L1 229894 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 275-131 chr16 64294434 64294701 + 2 NA Intergenic Intergenic 827496 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 296-158 chr15 70105713 70105944 + 2 NA Intergenic Intergenic -7911 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 218-188 chr20 41622973 41623134 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -4676 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 226-127 chr17 66229347 66229558 + 2 NA promoter-TSS (NM_000042) promoter-TSS (NM_000042) -37 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 301-191 chr2 5040856 5041098 + 2 NA Intergenic Intergenic -384755 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 169-78 chr3 128634327 128634442 + 2 NA intron (NM_002950, intron 3 of 9) intron (NM_002950, intron 3 of 9) 16434 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 203-82 chr16 71251777 71251893 + 2 NA Intergenic Intergenic -21113 NM_001198543 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 258-148 chr15 87552802 87553033 + 2 NA Intergenic L1MB7|LINE|L1 -24012 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 373-299 chr4 148911434 148911751 + 2 NA Intergenic Intergenic 30786 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 323-11 chr1 72261528 72261818 + 2 NA intron (NM_173808, intron 1 of 6) L1PB4|LINE|L1 20866 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 200-263 chr8 24139221 24139360 + 2 NA Intergenic Intergenic -154750 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 372-316 chr3 10612551 10612850 + 2 NA intron (NM_001353564, intron 1 of 20) L2a|LINE|L2 7261 NM_001353564 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 317-455 chr7 70977374 70977620 + 2 NA Intergenic AluJr|SINE|Alu -154647 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 128-24 chr17 66967023 66967127 + 2 NA intron (NM_014405, intron 1 of 3) intron (NM_014405, intron 1 of 3) 2368 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 195-58 chr13 82658803 82658965 + 2 NA Intergenic Intergenic 1223509 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 331-397 chr4 141745499 141745702 + 2 NA Intergenic Intergenic 109017 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 284-390 chr7 133435900 133436090 + 2 NA intron (NM_021807, intron 7 of 17) intron (NM_021807, intron 7 of 17) 145114 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 323-429 chr5 111878793 111878968 + 2 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -33628 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 388-74 chr12 19083944 19084248 + 2 NA Intergenic Intergenic -45637 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 240-47 chr10 53224200 53224394 + 2 NA Intergenic L1MA4|LINE|L1 -452597 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 469-153 chr20 31328548 31328952 + 2 NA Intergenic Intergenic -20165 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 234-178 chr2 102676940 102677157 + 2 NA intron (NM_003048, intron 3 of 11) intron (NM_003048, intron 3 of 11) 57495 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 384-406 chr9 117689867 117690187 + 2 NA Intergenic L1MB8|LINE|L1 -14376 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 355-61 chr10 82220238 82220438 + 2 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 12582 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 314-414 chr4 35476387 35476585 + 2 NA Intergenic AluSx|SINE|Alu 767453 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 159-67 chr4 66374781 66374873 + 2 NA Intergenic Intergenic 98003 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 213-294 chr8 142385678 142385887 + 2 NA intron (NM_001366903, intron 1 of 9) MLT1E2|LTR|ERVL-MaLR 17400 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 287-416 chr8 118808605 118808774 + 2 NA Intergenic MIRb|SINE|MIR 143196 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 703-60 chr3 191154945 191155462 + 2 NA Intergenic L1M3c|LINE|L1 -44038 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 464-55 chr14 22447914 22448186 + 2 NA intron (NR_148361, intron 2 of 4) intron (NR_148361, intron 2 of 4) -15297 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 303-335 chr4 167410722 167410882 + 2 NA Intergenic L2|LINE|L2 -176212 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 301-210 chr2 82298959 82299257 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -557695 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 281-15 chr1 158684737 158684968 + 2 NA intron (NM_003126, intron 2 of 51) intron (NM_003126, intron 2 of 51) 1863 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 333-171 chr15 99941317 99941506 + 2 NA Intergenic L1MA9|LINE|L1 134388 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 321-425 chr4 73160660 73160921 + 2 NA intron (NM_032217, intron 3 of 33) intron (NM_032217, intron 3 of 33) 62267 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 387-383 chr9 20253300 20253650 + 2 NA Intergenic Intergenic 157763 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 451-182 chr5 105555395 105555742 + 2 NA Intergenic Intergenic 456094 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 290-441 chr8 50423735 50423887 + 2 NA intron (NR_135795, intron 4 of 18) intron (NR_135795, intron 4 of 18) 259680 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 547-39 chr11 109122990 109123488 + 2 NA Intergenic Intergenic -298951 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 357-406 chr7 2857665 2857956 + 2 NA Intergenic Intergenic -13502 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 251-352 chr6 147668268 147668489 + 2 NA Intergenic L1ME3G|LINE|L1 159688 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 240-118 chr13 54833379 54833581 + 2 NA Intergenic Intergenic -340974 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 168-94 chr6 41528654 41528769 + 2 NA intron (NR_126415, intron 1 of 1) intron (NR_126415, intron 1 of 1) 17532 NR_126417 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 897-11 chr12 40171273 40171847 + 2 NA Intergenic Intergenic 15321 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 317-89 chr11 84162913 84163167 + 2 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 110240 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 118-32 chr22 34725830 34725892 + 2 NA Intergenic L1MA10|LINE|L1 272055 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 424-65 chr14 47908800 47909123 + 2 NA Intergenic L2|LINE|L2 -113947 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 478-36 chr10 130448596 130448933 + 2 NA Intergenic L1M3|LINE|L1 312355 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 492-135 chr2 124058599 124058930 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 33477 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 252-166 chr18 27262282 27262457 + 2 NA Intergenic L1MB7|LINE|L1 -77061 NM_031422 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 313-175 chr15 100482519 100482772 + 2 NA intron (NM_001290341, intron 7 of 13) intron (NM_001290341, intron 7 of 13) 61641 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 410-146 chr2 146208541 146208807 + 2 NA Intergenic Intergenic -378383 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 443-73 chr12 119274879 119275202 + 2 NA Intergenic MER20|DNA|hAT-Charlie 28340 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 279-382 chr7 15216929 15217148 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -242180 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 348-234 chr2 117718975 117719208 + 2 NA Intergenic Intergenic -95600 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 415-176 chr3 68231634 68231996 + 2 NA intron (NM_001252216, intron 2 of 4) L1MB8|LINE|L1 227568 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 285-343 chr5 85908865 85909034 + 2 NA Intergenic Intergenic -373495 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 357-45 chr10 107644341 107644686 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 424780 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 293-22 chr1 227441155 227441309 + 2 NA Intergenic Intergenic -122324 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 373-319 chr5 46292286 46292500 + 2 NA Intergenic ALR/Alpha|Satellite|centr -596013 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 472-302 chr7 67563664 67564032 + 2 NA Intergenic AluJr|SINE|Alu 227872 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 429-309 chr8 121564295 121564648 + 2 NA Intergenic L1MA9|LINE|L1 -74875 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 371-427 chrX 152020312 152020609 + 2 NA Intergenic L2|LINE|L2 -45784 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 330-486 chr7 29359790 29360023 + 2 NA intron (NM_001293071, intron 2 of 11) intron (NM_001293071, intron 2 of 11) -119806 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 292-188 chr18 78066604 78066873 + 2 NA Intergenic Intergenic -73011 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 199-127 chr2 168332415 168332564 + 2 NA Intergenic AluSx4|SINE|Alu -84894 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 286-336 chr5 4787857 4788018 + 2 NA Intergenic L1MA7|LINE|L1 14456 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 252-335 chr5 68917907 68918076 + 2 NA Intergenic Intergenic 111936 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 217-384 chr8 141847558 141847743 + 2 NA Intergenic Intergenic -61337 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 812-10 chr12 13344123 13344663 + 2 NA Intergenic L1ME5|LINE|L1 32352 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 164-27 chr12 30000276 30000381 + 2 NA Intergenic MIRb|SINE|MIR -215569 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 333-421 chr4 175850361 175850613 + 2 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) -37373 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 327-259 chr2 57257753 57257950 + 2 NA Intergenic Intergenic -649800 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 318-549 chr8 111300065 111300369 + 2 NA Intergenic Intergenic -64014 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 417-167 chr21 26877261 26877658 + 2 NA Intergenic Intergenic -32050 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 313-406 chr4 136773955 136774231 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -419663 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 268-436 chr9 70522511 70522720 + 2 NA Intergenic MER21B|LTR|ERVL -107958 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 307-363 chr4 188687358 188687579 + 2 NA Intergenic Intergenic -89189 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 350-423 chr5 156572719 156572918 + 2 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 245654 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 469-189 chr3 180438843 180439208 + 2 NA Intergenic L1MEc|LINE|L1 24852 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 354-86 chr11 95665604 95665838 + 2 NA Intergenic L1M4c|LINE|L1 124061 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 251-9 chr1 95205330 95205491 + 2 NA intron (NR_125949, intron 2 of 3) L2a|LINE|L2 28572 NR_125949 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 384-249 chr4 30676192 30676441 + 2 NA Intergenic MER70B|LTR|ERVL -44053 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 273-448 chr8 78615853 78616039 + 2 NA Intergenic Intergenic -50143 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 128-5 chr1 236911110 236911206 + 2 NA Intergenic Intergenic 93283 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 381-223 chr20 11713640 11713891 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 156950 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 176-138 chr8 48313733 48313874 + 2 NA Intergenic Intergenic -237764 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 308-99 chr12 14358363 14358580 + 2 NA Intergenic AluSg|SINE|Alu -7161 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 243-261 chr21 18350758 18350946 + 2 NA intron (NM_002772, intron 10 of 24) L2a|LINE|L2 52933 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 345-240 chr2 12175199 12175492 + 2 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) -23785 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 502-204 chr4 127038411 127038889 + 2 NA Intergenic L1PA16|LINE|L1 -594307 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 347-313 chr3 110483117 110483290 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 586756 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 316-402 chr4 76362516 76362752 + 2 NA intron (NM_001042784, intron 11 of 23) intron (NM_001042784, intron 11 of 23) 44671 NM_001042784 339965 Hs.529680 NM_178555 ENSG00000163749 CCDC158 - coiled-coil domain containing 158 protein-coding 297-24 chr1 112011974 112012256 + 2 NA Intergenic Intergenic 21579 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 400-237 chr4 12089308 12089561 + 2 NA Intergenic Intergenic -134017 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 469-202 chr4 66006471 66006776 + 2 NA Intergenic Intergenic -270201 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 476-117 chr18 3291440 3291739 + 2 NA Intergenic L1MA3|LINE|L1 28870 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 561-5 chr1 80999253 80999638 + 2 NA Intergenic Intergenic -306747 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 314-314 chr2 185557470 185557705 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 181132 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 386-64 chr11 108775455 108775836 + 2 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 110576 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 363-458 chr8 131449225 131449506 + 2 NA Intergenic L1PB3|LINE|L1 -408456 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 509-81 chr16 11761316 11761641 + 2 NA exon (NM_014153, exon 19 of 23) exon (NM_014153, exon 19 of 23) -18621 NR_136674 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 354-5 chr1 34152735 34153015 + 2 NA intron (NM_052896, intron 1 of 69) L1MB3|LINE|L1 12399 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 857-39 chr3 109704406 109705228 + 2 NA Intergenic L2a|LINE|L2 101989 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 347-302 chr3 60379284 60379496 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 238480 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 234-390 chr8 107301079 107301296 + 2 NA intron (NM_001199859, intron 5 of 8) intron (NM_001199859, intron 5 of 8) 35328 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 519-82 chr18 13315193 13315615 + 2 NA intron (NM_181482, intron 2 of 5) L1MEg|LINE|L1 37299 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 420-80 chr14 49835444 49835835 + 2 NA intron (NM_001301732, intron 6 of 31) L1M4|LINE|L1 17149 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 337-491 chr6 69353234 69353563 + 2 NA intron (NM_001704, intron 26 of 31) (TGTTT)n|Simple_repeat|Simple_repeat 443068 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 186-165 chr8 103964435 103964550 + 2 NA intron (NR_145711, intron 12 of 21) L1MC1|LINE|L1 145272 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 407-347 chr9 108531888 108532138 + 2 NA Intergenic Intergenic 323973 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 209-97 chr14 73655905 73656080 + 2 NA intron (NM_001201366, intron 3 of 8) intron (NM_001201366, intron 3 of 8) 11006 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 351-260 chr20 28494735 28494977 + 2 NA Intergenic ALR/Alpha|Satellite|centr 107809 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 240-93 chr11 129165858 129166087 + 2 NA intron (NM_001142685, intron 1 of 21) L1ME3|LINE|L1 26226 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 678-110 chr8 135039729 135040347 + 2 NA Intergenic LTR16A|LTR|ERVL 190103 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 266-421 chr8 90418413 90418629 + 2 NA Intergenic Intergenic 187542 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 732-51 chr20 9170667 9171197 + 2 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -46458 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 314-255 chr19 37652638 37652900 + 2 NA intron (NM_001320666, intron 2 of 5) intron (NM_001320666, intron 2 of 5) 2696 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 389-32 chr10 53580620 53580859 + 2 NA Intergenic L1MC3|LINE|L1 -809039 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 350-420 chr5 152716032 152716235 + 2 NA intron (NR_109877, intron 3 of 4) L1MC5a|LINE|L1 256216 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 125-2 chr1 155985235 155985311 + 2 NA Intergenic Intergenic -5713 NM_001350112 9181 Hs.743352 NM_004723 ENSG00000116584 ARHGEF2 GEF|GEF-H1|GEFH1|LFP40|NEDMHM|P40 Rho/Rac guanine nucleotide exchange factor 2 protein-coding 664-17 chr10 30802904 30803538 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 80002 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 562-133 chr3 2461088 2461500 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 222465 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 434-190 chr3 103614674 103615041 + 2 NA Intergenic Intergenic -90741 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 211-243 chr5 111834211 111834360 + 2 NA intron (NM_001142474, intron 2 of 3) LTR40b|LTR|ERVL -76067 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 128-76 chr8 73518474 73518565 + 2 NA intron (NM_001164383, intron 8 of 9) MER58B|DNA|hAT-Charlie 98445 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 262-211 chr2 103273692 103273857 + 2 NA Intergenic L1MEg|LINE|L1 -289345 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 210-54 chr12 14513489 14513640 + 2 NA intron (NM_024829, intron 6 of 10) MIR3|SINE|MIR -54168 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 549-14 chr1 181245310 181245683 + 2 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? 9108 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 673-8 chr1 208871931 208872333 + 2 NA Intergenic L1MEc|LINE|L1 -100322 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 306-541 chr9 15825873 15826041 + 2 NA intron (NM_001355547, intron 20 of 24) intron (NM_001355547, intron 20 of 24) 261979 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 261-415 chrX 10265300 10265528 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 108439 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 432-132 chr2 98329798 98330111 + 2 NA Intergenic Intergenic -16201 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 341-360 chr3 182554301 182554633 + 2 NA Intergenic L1MEi|LINE|L1 -47343 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 274-42 chr10 53063247 53063472 + 2 NA Intergenic Intergenic -291659 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 321-90 chr11 21051045 21051350 + 2 NA intron (NM_201551, intron 12 of 18) L1PB1|LINE|L1 381611 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 275-92 chr13 38735139 38735353 + 2 NA intron (NM_207361, intron 2 of 23) (ATATTAA)n|Simple_repeat|Simple_repeat 48169 NM_207361 341640 Hs.253994 NM_207361 ENSG00000150893 FREM2 CRYPTOP|FRASRS2 FRAS1 related extracellular matrix 2 protein-coding 454-331 chr9 28305203 28305451 + 2 NA intron (NM_001354574, intron 4 of 5) L1M4|LINE|L1 413978 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 304-137 chr14 40468551 40468778 + 2 NA Intergenic LTR25-int|LTR|ERV1 -486047 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 299-442 chr8 46503262 46503444 + 2 NA Intergenic ALR/Alpha|Satellite|centr 114290 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 510-118 chr19 15642993 15643393 + 2 NA intron (NM_000896, intron 2 of 12) (TAGA)n|Simple_repeat|Simple_repeat 1881 NM_001369696 4051 Hs.106242 NM_000896 ENSG00000186529 CYP4F3 CPF3|CYP4F|CYPIVF3|LTB4H cytochrome P450 family 4 subfamily F member 3 protein-coding 256-377 chr7 3503478 3503702 + 2 NA intron (NM_152744, intron 1 of 44) AluJo|SINE|Alu 202338 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 163-26 chr11 86560808 86560916 + 2 NA intron (NM_001014811, intron 1 of 13) L1MC3|LINE|L1 111336 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 286-217 chr2 126944519 126944679 + 2 NA Intergenic MER39|LTR|ERV1 45709 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 173-14 chr10 81396504 81396590 + 2 NA Intergenic L1MC1|LINE|L1 -478647 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 312-36 chr10 31223282 31223489 + 2 NA intron (NR_134478, intron 1 of 2) MamTip2|DNA|hAT-Tip100 35502 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 333-481 chr5 156382083 156382381 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 55068 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 232-384 chr8 124212776 124212937 + 2 NA intron (NR_125420, intron 1 of 2) L2c|LINE|L2 34542 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 562-173 chr5 44599176 44599640 + 2 NA Intergenic L1PA13|LINE|L1 -89126 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 689-6 chr1 176634997 176635409 + 2 NA intron (NM_021936, intron 3 of 4) MER112|DNA|hAT-Charlie 172028 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 550-127 chr2 210363795 210364301 + 2 NA intron (NR_110606, intron 1 of 4) L1PA15-16|LINE|L1 39336 NR_110606 102724820 Hs.659232 NR_110604 LANCL1-AS1 LANCLOT LANCL1 antisense RNA 1 ncRNA 295-355 chr4 100866691 100866839 + 2 NA Intergenic L1PA6|LINE|L1 -191652 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 494-225 chr5 42671010 42671326 + 2 NA intron (NM_001242403, intron 3 of 9) MSTA|LTR|ERVL-MaLR -85650 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 287-259 chr3 106277869 106278088 + 2 NA Intergenic LTR33|LTR|ERVL -408577 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 335-176 chr15 83844653 83844982 + 2 NA intron (NM_207517, intron 7 of 29) intron (NM_207517, intron 7 of 29) 190694 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 775-88 chr9 81411199 81411768 + 2 NA Intergenic L1MD3|LINE|L1 278052 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 505-152 chr2 100704051 100704375 + 2 NA Intergenic Intergenic 100474 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 376-171 chr2 24137325 24137603 + 2 NA intron (NR_111929, intron 4 of 5) intron (NR_111929, intron 4 of 5) 13995 NM_001145710 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 146-60 chr3 157628538 157628618 + 2 NA Intergenic L1MB4|LINE|L1 85234 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 292-334 chr5 5155313 5155462 + 2 NA intron (NM_139056, intron 3 of 22) LTR50|LTR|ERVL 15057 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 532-139 chr2 208754523 208754902 + 2 NA intron (NR_136588, intron 3 of 5) L1MB1|LINE|L1 212070 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 243-318 chr4 39153357 39153509 + 2 NA Intergenic L1ME3Cz|LINE|L1 -29096 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 307-432 chr6 119852883 119853176 + 2 NA Intergenic Intergenic -162150 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 416-101 chr12 124860836 124861233 + 2 NA intron (NR_160424, intron 1 of 11) L1ME3G|LINE|L1 2830 NR_160417 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 405-30 chr10 56652353 56652741 + 2 NA Intergenic Intergenic -291274 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 203-110 chr2 52403770 52403946 + 2 NA intron (NR_135237, intron 10 of 10) intron (NR_135237, intron 10 of 10) 33210 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 532-80 chr15 70191813 70192145 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -94062 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 279-282 chr4 6051673 6051867 + 2 NA intron (NM_001099433, intron 13 of 20) intron (NM_001099433, intron 13 of 20) -33224 NM_001364690 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 263-267 chr3 143196072 143196306 + 2 NA Intergenic Intergenic 76418 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 559-27 chr11 104939203 104939643 + 2 NA Intergenic Intergenic -21248 NR_034078 643733 Hs.713751 NR_034078 ENSG00000235505 CASP17P - caspase 17, pseudogene pseudo 321-126 chr12 27186657 27186840 + 2 NA Intergenic Intergenic -57538 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 272-336 chr5 27895758 27895981 + 2 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat 391796 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 318-106 chr11 62250877 62251053 + 2 NA Intergenic Intergenic 8726 NM_006551 10647 Hs.204096 NM_006551 ENSG00000124935 SCGB1D2 LIPB|LPHB|LPNB secretoglobin family 1D member 2 protein-coding 480-84 chr14 81069134 81069569 + 2 NA intron (NM_001142626, intron 3 of 8) intron (NM_001142626, intron 3 of 8) 113730 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 530-218 chr6 127137978 127138350 + 2 NA intron (NM_032784, intron 1 of 4) MER5A|DNA|hAT-Charlie 19493 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 360-25 chr10 10617926 10618248 + 2 NA intron (NM_001326317, intron 1 of 14) L2c|LINE|L2 155537 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 488-108 chr17 70207283 70207632 + 2 NA Intergenic Intergenic 37922 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 324-471 chr6 114890300 114890507 + 2 NA Intergenic Intergenic 753432 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 697-61 chr5 150963539 150964023 + 2 NA Intergenic MER4-int|LTR|ERV1 -17197 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 334-593 chrX 153661020 153661197 + 2 NA Intergenic L1MB7|LINE|L1 12180 NM_001135740 139728 Hs.436667 NM_198452 ENSG00000130822 PNCK BSTK3|CaMK1b pregnancy up-regulated nonubiquitous CaM kinase protein-coding 241-329 chr6 61371976 61372139 + 2 NA Intergenic ALR/Alpha|Satellite|centr -202073 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 397-318 chr7 134471623 134471947 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -12546 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 505-4 chr1 59876963 59877371 + 2 NA TTS (NM_015888) TTS (NM_015888) 49606 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 256-100 chr13 45404422 45404653 + 2 NA intron (NM_001286807, intron 4 of 9) AluSx1|SINE|Alu -13625 NR_047031 100874259 Hs.658038 NR_047031 ENSG00000251015 SLC25A30-AS1 - SLC25A30 antisense RNA 1 ncRNA 358-527 chrX 76851135 76851400 + 2 NA intron (NR_110403, intron 1 of 3) L1PA16|LINE|L1 68093 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 375-417 chr8 120559869 120560226 + 2 NA intron (NM_021021, intron 4 of 6) intron (NM_021021, intron 4 of 6) 114628 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 112-44 chr7 47159433 47159519 + 2 NA Intergenic L1MCa|LINE|L1 305327 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 276-407 chr6 80416725 80416881 + 2 NA Intergenic L1PA13|LINE|L1 310132 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 569-122 chr3 162655299 162655666 + 2 NA Intergenic MER34D|LTR|ERV1 647819 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 381-210 chr2 153085468 153085812 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 367003 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 339-271 chr2 106784417 106784642 + 2 NA Intergenic Intergenic 101499 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 434-95 chr15 91786795 91787085 + 2 NA Intergenic Intergenic -66768 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 459-30 chr10 54373655 54373955 + 2 NA intron (NM_001354411, intron 4 of 34) intron (NM_001354411, intron 4 of 34) -112425 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 506-28 chr1 219690617 219690960 + 2 NA Intergenic L1MB1|LINE|L1 -77643 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 293-19 chr1 191216377 191216650 + 2 NA Intergenic MLT2B1|LTR|ERVL 11985 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 313-419 chr5 17713325 17713595 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -57822 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 200-85 chr15 86129138 86129292 + 2 NA intron (NM_152336, intron 1 of 24) intron (NM_152336, intron 1 of 24) -12498 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 328-508 chr6 96237463 96237703 + 2 NA Intergenic Intergenic 221609 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 355-58 chr10 77042964 77043279 + 2 NA intron (NM_001271519, intron 14 of 28) intron (NM_001271519, intron 14 of 28) -97710 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 204-278 chr8 26147474 26147598 + 2 NA Intergenic L1ME4c|LINE|L1 -102123 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 505-224 chr4 121291918 121292269 + 2 NA Intergenic L1MA9|LINE|L1 -64610 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 231-131 chr18 1100730 1100871 + 2 NA Intergenic Intergenic -172807 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 380-26 chr1 173134295 173134629 + 2 NA Intergenic Intergenic 71070 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 281-270 chr21 27372223 27372491 + 2 NA Intergenic Intergenic -350022 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 561-46 chr12 39112810 39113181 + 2 NA Intergenic Intergenic -207404 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 471-36 chr10 86517978 86518237 + 2 NA intron (NM_001318328, intron 1 of 18) intron (NM_001318328, intron 1 of 18) 3677 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 549-103 chr2 32967219 32967536 + 2 NA intron (NM_206943, intron 2 of 33) L1MC1|LINE|L1 20424 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 552-140 chr3 89845830 89846256 + 2 NA Intergenic Intergenic 738422 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 423-43 chr11 4483700 4484088 + 2 NA Intergenic Intergenic -4985 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 134-17 chr11 92167262 92167373 + 2 NA Intergenic L2c|LINE|L2 -57717 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 309-508 chr7 37549255 37549425 + 2 NA Intergenic MIRc|SINE|MIR -100014 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 359-244 chr2 126080777 126081086 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 37054 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 239-356 chr6 88100235 88100364 + 2 NA Intergenic Intergenic 45038 NM_033181 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 538-75 chr14 95005852 95006175 + 2 NA Intergenic Intergenic 127490 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 450-126 chr19 32483624 32483985 + 2 NA 3' UTR (NM_001172774, exon 19 of 19) 3' UTR (NM_001172774, exon 19 of 19) 77679 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like C-mannosyltransferase 3 protein-coding 417-267 chr7 78708351 78708676 + 2 NA intron (NM_001301128, intron 2 of 20) MIR|SINE|MIR -300475 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 249-83 chr11 127581885 127582071 + 2 NA Intergenic Intergenic 310908 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 264-249 chr21 16806935 16807097 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 216779 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 356-418 chr6 21642176 21642414 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -24118 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 384-318 chr6 87095385 87095680 + 2 NA promoter-TSS (NM_000735) promoter-TSS (NM_000735) -426 NM_000735 1081 Hs.119689 NM_000735 ENSG00000135346 CGA CG-ALPHA|FSHA|GPA1|GPHA1|GPHa|HCG|LHA|TSHA glycoprotein hormones, alpha polypeptide protein-coding 503-126 chr18 3910095 3910492 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 24940 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 165-124 chr7 124450768 124450874 + 2 NA Intergenic Intergenic -98725 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 289-44 chr10 8785772 8785938 + 2 NA Intergenic L1MEd|LINE|L1 -112134 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 362-105 chr12 2707386 2707628 + 2 NA Intergenic L1MB2|LINE|L1 -16350 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 174-104 chr4 74639990 74640124 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 154466 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 446-316 chr8 132271957 132272343 + 2 NA intron (NM_004519, intron 1 of 14) MIRc|SINE|MIR -166885 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 212-237 chr4 76807666 76807868 + 2 NA Intergenic MER91B|DNA|hAT-Tip100 90377 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 229-270 chr4 30844791 30844983 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 124518 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 443-74 chr12 124113888 124114284 + 2 NA intron (NM_001347902, intron 2 of 4) AluY|SINE|Alu 140871 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 334-532 chr8 77991634 77991907 + 2 NA Intergenic Intergenic -524570 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 174-88 chr3 77454245 77454369 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 356295 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 667-106 chr7 119647865 119648402 + 2 NA intron (NR_131960, intron 4 of 4) intron (NR_131960, intron 4 of 4) 259242 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 331-410 chr5 16963742 16963958 + 2 NA Intergenic AluJr|SINE|Alu -27562 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 268-44 chr10 43736505 43736744 + 2 NA Intergenic Intergenic 42201 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 531-33 chr11 5827929 5828347 + 2 NA Intergenic L1MA8|LINE|L1 7802 NM_001005174 390077 Hs.553737 NM_001005174 ENSG00000180988 OR52N2 OR11-57 olfactory receptor family 52 subfamily N member 2 protein-coding 617-78 chr3 26196749 26197177 + 2 NA Intergenic Intergenic -323268 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 138-53 chr4 34468100 34468200 + 2 NA Intergenic Intergenic -198403 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 171-60 chr2 122997286 122997406 + 2 NA Intergenic Intergenic 76135 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 205-54 chr11 59322435 59322584 + 2 NA Intergenic Intergenic -41950 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 280-369 chr7 9131789 9132020 + 2 NA Intergenic L1PA8|LINE|L1 -502366 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 315-176 chr16 76960010 76960229 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 91183 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 604-9 chr10 20615592 20616142 + 2 NA Intergenic Intergenic 63897 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 242-230 chr3 10545887 10546090 + 2 NA intron (NM_001353564, intron 1 of 20) intron (NM_001353564, intron 1 of 20) -40402 NM_001683 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 210-204 chr4 89466706 89466887 + 2 NA Intergenic Intergenic -158996 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 359-316 chr3 70716423 70716630 + 2 NA Intergenic Intergenic 348398 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 283-215 chr19 57992577 57992790 + 2 NA intron (NM_001348024, intron 3 of 5) L1MC5a|LINE|L1 10137 NM_001348024 80095 Hs.654967 NM_025027 ENSG00000166704 ZNF606 ZNF328 zinc finger protein 606 protein-coding 584-124 chr4 180096855 180097243 + 2 NA Intergenic L1PA15|LINE|L1 1062100 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 383-390 chr8 120380585 120380918 + 2 NA Intergenic LTR16E1|LTR|ERVL 64399 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 587-104 chr3 67231738 67232150 + 2 NA Intergenic HERVL32-int|LTR|ERVL 6480 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 332-590 chrX 86106062 86106340 + 2 NA Intergenic L1MA1|LINE|L1 -42250 NM_001139514 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 256-178 chr19 28412982 28413186 + 2 NA Intergenic Intergenic -193604 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 230-109 chr14 47290233 47290389 + 2 NA intron (NM_001113498, intron 2 of 16) MLT1A0|LTR|ERVL-MaLR 52935 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 771-29 chr16 8407737 8408218 + 2 NA Intergenic Intergenic 181861 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 525-78 chr15 46581419 46581757 + 2 NA Intergenic MIRc|SINE|MIR -602501 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 450-36 chr10 109505174 109505485 + 2 NA Intergenic MIR|SINE|MIR 417917 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 299-298 chr3 152243299 152243487 + 2 NA Intergenic Intergenic -25536 NM_021038 4154 Hs.201858 NM_021038 ENSG00000152601 MBNL1 EXP|MBNL muscleblind like splicing regulator 1 protein-coding 562-57 chr14 44427506 44427884 + 2 NA Intergenic Intergenic 79588 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 273-387 chr6 48771285 48771437 + 2 NA Intergenic Intergenic 691892 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 496-103 chr15 92178537 92178980 + 2 NA Intergenic Intergenic -215123 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 255-39 chr10 92920253 92920437 + 2 NA intron (NM_001319195, intron 8 of 21) L1MEc|LINE|L1 71825 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 520-200 chr3 192779736 192780221 + 2 NA Intergenic Intergenic -52437 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 317-265 chr2 215638683 215638962 + 2 NA intron (NR_037195, intron 5 of 9) L1M4a1|LINE|L1 -79221 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 465-169 chr3 8424700 8424963 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 76827 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 341-281 chr2 229574365 229574553 + 2 NA intron (NM_139072, intron 4 of 12) L1ME4a|LINE|L1 140096 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 235-9 chr1 71205855 71206037 + 2 NA intron (NR_046217, intron 2 of 3) intron (NR_046217, intron 2 of 3) 124622 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 510-167 chr20 7855579 7855918 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 84710 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 734-12 chr11 50385897 50386513 + 2 NA Intergenic ALR/Alpha|Satellite|centr -22942 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 320-181 chr16 9421093 9421346 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 23766 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 249-409 chr8 61821283 61821502 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -68447 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 320-118 chr12 46745610 46745910 + 2 NA Intergenic L1P4|LINE|L1 80237 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 264-188 chr19 58074319 58074481 + 2 NA Intergenic AluSp|SINE|Alu 15118 NM_003436 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 234-406 chrX 39481304 39481489 + 2 NA Intergenic L1ME3G|LINE|L1 -89622 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 807-28 chr2 115406287 115407008 + 2 NA intron (NM_001321912, intron 4 of 25) L1M4|LINE|L1 62832 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 410-25 chr10 11307931 11308212 + 2 NA intron (NM_001025076, intron 9 of 13) L1M4b|LINE|L1 36603 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 767-11 chr12 37912727 37913299 + 2 NA Intergenic ALR/Alpha|Satellite|centr -403761 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 164-30 chr12 128524593 128524728 + 2 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 230568 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 213-264 chr7 38695681 38695855 + 2 NA Intergenic Intergenic -8679 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 234-332 chr6 2866841 2867014 + 2 NA intron (NR_033851, intron 1 of 1) intron (NR_033851, intron 1 of 1) 9583 NR_033851 221756 Hs.8162 NM_182544 SERPINB9P1 SERPINB9P serpin family B member 9 pseudogene 1 pseudo 584-108 chr3 165227784 165228293 + 2 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 21078 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 314-618 chr9 120896064 120896344 + 2 NA Intergenic MIRb|SINE|MIR -1308 NM_001286840 26147 Hs.460124 NM_015651 ENSG00000119403 PHF19 MTF2L1|PCL3|TDRD19B PHD finger protein 19 protein-coding 383-198 chr2 110821572 110821928 + 2 NA intron (NM_001371254, intron 9 of 18) L1MC3|LINE|L1 89177 NM_001371254 374-240 chr3 21702032 21702326 + 2 NA intron (NM_024697, intron 1 of 7) THE1A-int|LTR|ERVL-MaLR 49031 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 571-65 chr18 76146530 76147028 + 2 NA Intergenic Intergenic 23781 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 231-240 chr3 155100528 155100693 + 2 NA intron (NM_000902, intron 3 of 22) intron (NM_000902, intron 3 of 22) 20599 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 339-491 chr6 71408134 71408396 + 2 NA non-coding (NR_121614, exon 3 of 3) non-coding (NR_121614, exon 3 of 3) -4644 NR_029504 407029 NR_029504 ENSG00000207827 MIR30A MIRN30A|mir-30a microRNA 30a ncRNA 272-64 chr10 112198709 112198898 + 2 NA Intergenic L1MA7|LINE|L1 -15038 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 238-424 chr9 130496018 130496237 + 2 NA intron (NM_054012, intron 13 of 14) L2b|LINE|L2 51166 NM_054012 445 Hs.160786 NM_000050 ENSG00000130707 ASS1 ASS|CTLN1 argininosuccinate synthase 1 protein-coding 216-21 chr1 163407256 163407401 + 2 NA Intergenic Intergenic 15863 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 446-207 chr4 7465305 7465672 + 2 NA intron (NM_020777, intron 2 of 26) intron (NM_020777, intron 2 of 26) 5460 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 256-355 chr6 38826062 38826247 + 2 NA intron (NM_001371, intron 27 of 91) intron (NM_001371, intron 27 of 91) 110843 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 300-239 chr20 35587119 35587332 + 2 NA intron (NR_119376, intron 21 of 42) AluSq2|SINE|Alu 20337 NR_119376 80307 Hs.72222 NR_001442 ENSG00000088340 FER1L4 C20orf124 fer-1 like family member 4 (pseudogene) pseudo 476-169 chr21 24978845 24979256 + 2 NA intron (NR_046198, intron 2 of 3) Tigger7|DNA|TcMar-Tigger 138500 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 322-175 chr15 61789751 61790050 + 2 NA Intergenic Intergenic 59982 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 309-493 chr6 146234013 146234280 + 2 NA intron (NM_001278065, intron 3 of 9) L1MEc|LINE|L1 204948 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 223-153 chr2 63127526 63127664 + 2 NA intron (NR_148704, intron 18 of 18) intron (NR_148704, intron 18 of 18) -8053 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 763-52 chr5 137637314 137637756 + 2 NA intron (NM_017415, intron 10 of 14) intron (NM_017415, intron 10 of 14) 10114 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 193-31 chr10 105654281 105654434 + 2 NA Intergenic Intergenic 165976 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 443-157 chr2 180968532 180968811 + 2 NA Intergenic Intergenic -11714 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 261-9 chr1 66687489 66687676 + 2 NA intron (NM_032291, intron 15 of 24) intron (NM_032291, intron 15 of 24) 59142 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 545-8 chr1 106948739 106949123 + 2 NA Intergenic Intergenic -107743 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 296-388 chr5 157914243 157914443 + 2 NA Intergenic Helitron3Na_Mam|RC|Helitron -55198 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 283-201 chr18 65444037 65444196 + 2 NA Intergenic Intergenic -306136 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 590-39 chr13 65377580 65378023 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -488246 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 195-200 chr5 117074764 117074896 + 2 NA Intergenic L1MEf|LINE|L1 -312621 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 427-282 chr9 108454360 108454657 + 2 NA Intergenic L1MD|LINE|L1 401478 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 310-537 chr8 126694634 126694941 + 2 NA Intergenic L1MC1|LINE|L1 -136309 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 486-313 chr9 97343667 97343954 + 2 NA intron (NR_036529, intron 30 of 44) intron (NR_036529, intron 30 of 44) 19871 NR_031637 100302223 NR_031637 ENSG00000221269 MIR1302-8 MIRN1302-8|hsa-mir-1302-8 microRNA 1302-8 ncRNA 470-272 chr8 111684533 111684819 + 2 NA Intergenic Intergenic 308037 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 288-19 chr1 102868533 102868696 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 239882 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 223-52 chr11 70081413 70081575 + 2 NA intron (NM_018043, intron 1 of 25) intron (NM_018043, intron 1 of 25) 2954 NM_018043 55107 Hs.503074 NM_018043 ENSG00000131620 ANO1 DOG1|ORAOV2|TAOS2|TMEM16A anoctamin 1 protein-coding 290-277 chr3 46738594 46738833 + 2 NA Intergenic Intergenic -2286 NR_147121 100287362 Hs.673244 NM_001205271 ENSG00000261603 PRSS46P PRSS46|TESSP6 serine protease 46, pseudogene pseudo 490-252 chr6 140772471 140772804 + 2 NA Intergenic Intergenic 88823 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 216-234 chr3 135130925 135131100 + 2 NA intron (NM_004441, intron 4 of 15) intron (NM_004441, intron 4 of 15) 335752 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 249-439 chr8 141913589 141913803 + 2 NA Intergenic L1MCb|LINE|L1 -127383 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 178-155 chr8 134300755 134300869 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -297259 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 271-346 chr5 59312037 59312250 + 2 NA intron (NM_001165899, intron 3 of 16) MER50-int|LTR|ERV1 -36028 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 140-18 chr12 34243852 34243952 + 2 NA Intergenic Intergenic 221406 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 262-268 chr22 47933428 47933591 + 2 NA Intergenic MLT2B3|LTR|ERVL 301835 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 229-131 chr15 99598154 99598331 + 2 NA intron (NM_001352616, intron 1 of 10) intron (NM_001352616, intron 1 of 10) 31759 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 470-290 chr9 102296029 102296347 + 2 NA Intergenic L1M2|LINE|L1 -223449 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 361-297 chr3 110982592 110982949 + 2 NA Intergenic L1MCc|LINE|L1 87189 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 207-74 chr13 113219759 113219952 + 2 NA intron (NM_001354942, intron 3 of 19) intron (NM_001354942, intron 3 of 19) 10242 NM_001354943 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 149-94 chr7 54597059 54597159 + 2 NA Intergenic Intergenic 40139 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 412-230 chr4 44477627 44477849 + 2 NA Intergenic LTR33|LTR|ERVL -28929 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 262-118 chr14 33076369 33076564 + 2 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 137587 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 215-244 chr5 10848734 10848893 + 2 NA Intergenic L1MA3|LINE|L1 -87579 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 307-114 chr12 129798288 129798446 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 105658 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 287-437 chr9 74402940 74403175 + 2 NA Intergenic Intergenic 31526 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 339-535 chr7 72026913 72027182 + 2 NA intron (NM_001363460, intron 3 of 5) MER106A|DNA|hAT-Charlie 310344 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 284-135 chr15 61248319 61248498 + 2 NA Intergenic L2c|LINE|L2 -19106 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 270-122 chr15 56582562 56582755 + 2 NA Intergenic MER65-int|LTR|ERV1 -117521 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 328-379 chr3 192991878 192992126 + 2 NA Intergenic MIR3|SINE|MIR -74146 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 555-5 chr1 96255553 96255912 + 2 NA non-coding (NR_110693, exon 6 of 6) non-coding (NR_110693, exon 6 of 6) 118393 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 319-57 chr10 55172843 55173044 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -371652 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 262-36 chr1 242667943 242668140 + 2 NA Intergenic AluSg|SINE|Alu -143344 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 485-202 chr4 43601550 43601980 + 2 NA Intergenic MIR|SINE|MIR -109222 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 226-87 chr14 36271248 36271421 + 2 NA Intergenic Intergenic 49303 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 300-350 chr5 21631071 21631311 + 2 NA Intergenic MIR|SINE|MIR 171711 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 260-37 chr10 17763994 17764200 + 2 NA intron (NM_001098844, intron 1 of 3) intron (NM_001098844, intron 1 of 3) 11896 NM_001098844 653567 Hs.564139 NM_001013629 ENSG00000148483 TMEM236 FAM23A|FAM23B|bA162I21.2|bA16O1.2 transmembrane protein 236 protein-coding 387-215 chr22 28281580 28281924 + 2 NA intron (NM_001145418, intron 5 of 22) L1MEf|LINE|L1 -178117 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 228-155 chr2 35118655 35118812 + 2 NA Intergenic L1M1|LINE|L1 -352672 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 400-61 chr11 115019017 115019384 + 2 NA Intergenic L1ME3|LINE|L1 -314377 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 308-211 chr19 51481970 51482185 + 2 NA intron (NM_001278392, intron 3 of 5) intron (NM_001278392, intron 3 of 5) 3434 NM_001278392 729767 Hs.653111 NM_001080405 ENSG00000213822 CEACAM18 - carcinoembryonic antigen related cell adhesion molecule 18 protein-coding 203-249 chr9 35883868 35883996 + 2 NA Intergenic L1MEd|LINE|L1 -13531 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 248-142 chr16 71933354 71933566 + 2 NA exon (NM_181536, exon 28 of 30) exon (NM_181536, exon 28 of 30) 37929 NM_001270975 9798 Hs.232194 NM_014761 ENSG00000182149 IST1 CHMP8|OLC1 IST1 factor associated with ESCRT-III protein-coding 613-129 chr8 50262756 50263271 + 2 NA intron (NR_135797, intron 2 of 20) L1MC1|LINE|L1 98882 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 315-402 chr5 164278075 164278319 + 2 NA Intergenic Intergenic 189205 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 156-49 chr2 15134553 15134692 + 2 NA Intergenic Intergenic 426712 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 234-129 chr17 30044751 30044940 + 2 NA intron (NR_026738, intron 8 of 15) L1ME1|LINE|L1 -71962 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 402-138 chr2 24548098 24548323 + 2 NA intron (NM_001362952, intron 1 of 23) THE1B|LTR|ERVL-MaLR -36267 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 606-78 chr2 21994780 21995174 + 2 NA Intergenic Intergenic -284325 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 217-352 chr7 54194163 54194330 + 2 NA Intergenic L1MC|LINE|L1 -136451 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 345-343 chr3 24154151 24154377 + 2 NA intron (NM_001354708, intron 4 of 9) intron (NM_001354708, intron 4 of 9) 2940 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 305-506 chr7 51443846 51444048 + 2 NA Intergenic MLT2A1|LTR|ERVL -50691 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 324-102 chr11 98949711 98949905 + 2 NA Intergenic L1MC4|LINE|L1 -71141 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 337-564 chr8 135409396 135409684 + 2 NA Intergenic L1MC3|LINE|L1 -47916 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 215-74 chr14 26342321 26342488 + 2 NA Intergenic L1M6|LINE|L1 211026 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 456-328 chr8 130887635 130887949 + 2 NA intron (NM_001115, intron 7 of 17) intron (NM_001115, intron 7 of 17) 153117 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 341-87 chr11 69332006 69332234 + 2 NA Intergenic AluSx|SINE|Alu 37965 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 262-245 chr20 18732704 18732877 + 2 NA intron (NM_080820, intron 4 of 5) Tigger14a|DNA|TcMar-Tigger -34082 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 381-84 chr12 24014851 24015134 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -63960 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 379-336 chr8 54924629 54924856 + 2 NA Intergenic AluJr|SINE|Alu -177286 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 657-96 chr8 46781861 46782272 + 2 NA Intergenic AluSc5|SINE|Alu -58820 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 325-140 chr12 118947774 118948011 + 2 NA Intergenic Intergenic -33649 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 212-148 chr2 49123825 49124020 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 30593 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 324-316 chr20 48272881 48273094 + 2 NA Intergenic HERVL74-int|LTR|ERVL -86924 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 263-150 chr17 29972592 29972780 + 2 NA intron (NR_026738, intron 4 of 15) intron (NR_026738, intron 4 of 15) 31052 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 289-346 chr4 95846872 95847146 + 2 NA Intergenic Intergenic 6916 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 286-284 chr3 83793424 83793631 + 2 NA Intergenic Intergenic 1076048 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 237-304 chr5 101514692 101514890 + 2 NA Intergenic Intergenic -611509 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 362-334 chr5 10892536 10892870 + 2 NA Intergenic Intergenic -131469 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 212-325 chr8 84224525 84224692 + 2 NA intron (NM_001354323, intron 1 of 7) MER115|DNA|hAT-Tip100 39942 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 312-150 chr14 62304042 62304337 + 2 NA Intergenic Intergenic -164216 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 394-175 chr2 96504927 96505255 + 2 NA intron (NM_001285486, intron 1 of 5) MIRc|SINE|MIR 266 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 327-115 chr12 48242349 48242543 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -39154 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 378-160 chr16 53428160 53428488 + 2 NA Intergenic Intergenic -6147 NM_001323610 5934 Hs.513609 NM_005611 ENSG00000103479 RBL2 P130|Rb2 RB transcriptional corepressor like 2 protein-coding 315-253 chr2 117462099 117462309 + 2 NA Intergenic L1PA2|LINE|L1 -352487 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 323-103 chr12 8928260 8928550 + 2 NA intron (NM_004426, intron 6 of 14) intron (NM_004426, intron 6 of 14) 13896 NM_004426 1911 Hs.744902 NM_004426 ENSG00000111752 PHC1 EDR1|HPH1|MCPH11|RAE28 polyhomeotic homolog 1 protein-coding 430-36 chr10 81238892 81239172 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 589235 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 169-136 chr8 83010273 83010398 + 2 NA Intergenic Intergenic 98231 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 326-477 chr6 164423861 164424156 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 398055 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 399-217 chr3 155489337 155489664 + 2 NA intron (NM_001349252, intron 19 of 24) MIR3|SINE|MIR 3697 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 184-43 chr12 39145914 39146049 + 2 NA Intergenic MIR|SINE|MIR -240390 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 306-215 chr19 36879814 36880029 + 2 NA TTS (NM_003419) TTS (NM_003419) 28270 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 362-377 chr6 64471776 64472045 + 2 NA intron (NM_001292009, intron 26 of 43) L1MA4|LINE|L1 665074 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 494-156 chr20 54777065 54777390 + 2 NA Intergenic Intergenic 301634 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 231-13 chr1 94996108 94996333 + 2 NA intron (NM_144988, intron 3 of 3) MER5A1|DNA|hAT-Charlie -65376 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 383-41 chr10 125584593 125584972 + 2 NA intron (NM_001318133, intron 3 of 3) MLT1B|LTR|ERVL-MaLR 10411 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 798-45 chr4 96666133 96666655 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 355691 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 285-176 chr19 36674967 36675174 + 2 NA Intergenic Intergenic -8233 NM_001322823 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 177-63 chr16 78899283 78899393 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 701399 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 655-138 chr9 72862494 72863116 + 2 NA Intergenic AluSx1|SINE|Alu 11304 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 822-15 chr15 36627613 36628257 + 2 NA intron (NM_001290232, intron 1 of 10) intron (NM_001290232, intron 1 of 10) 33058 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 479-204 chr5 143787358 143787678 + 2 NA Intergenic MER113|DNA|hAT-Charlie -24643 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 156-54 chr2 79670614 79670739 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -21317 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 550-82 chr16 6042290 6042704 + 2 NA intron (NM_018723, intron 1 of 15) MLT1D|LTR|ERVL-MaLR 22794 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 380-285 chr4 116203117 116203377 + 2 NA Intergenic Intergenic -96478 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 211-225 chr5 14107378 14107527 + 2 NA Intergenic Intergenic -35890 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 580-182 chr7 50261583 50262006 + 2 NA Intergenic Intergenic -42270 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 312-115 chr12 119260530 119260827 + 2 NA Intergenic LTR47A|LTR|ERVL 42702 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 188-211 chr8 141263850 141264010 + 2 NA Intergenic Intergenic -9301 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 301-293 chr3 165653323 165653609 + 2 NA Intergenic LTR8B|LTR|ERV1 183957 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 324-14 chr1 79954215 79954463 + 2 NA Intergenic L2|LINE|L2 -581416 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 496-102 chr15 80213540 80213977 + 2 NA intron (NM_001352888, intron 1 of 2) L1M6|LINE|L1 38455 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 443-149 chr2 76573336 76573589 + 2 NA Intergenic Intergenic -412503 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 342-448 chr6 41394617 41394874 + 2 NA Intergenic HAL1|LINE|L1 59137 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 193-85 chr18 41895898 41896040 + 2 NA Intergenic LTR8B|LTR|ERV1 -59265 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 343-290 chr2 220979132 220979362 + 2 NA Intergenic Intergenic 593057 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 260-344 chr5 34811477 34811681 + 2 NA intron (NM_015577, intron 8 of 17) intron (NM_015577, intron 8 of 17) -27585 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 288-65 chr11 27107943 27108187 + 2 NA intron (NM_003986, intron 5 of 8) intron (NM_003986, intron 5 of 8) 67250 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 341-429 chr5 30019917 30020195 + 2 NA Intergenic Intergenic 139496 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 233-153 chr2 4027745 4027943 + 2 NA Intergenic Intergenic 53683 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 313-28 chr1 199356393 199356552 + 2 NA intron (NR_147896, intron 3 of 3) MIRb|SINE|MIR 207874 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 276-14 chr1 106192373 106192622 + 2 NA Intergenic L1PA12|LINE|L1 -164244 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 447-227 chr6 45358433 45358878 + 2 NA intron (NM_001015051, intron 2 of 7) MIRb|SINE|MIR 18863 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 340-496 chr7 8471815 8472042 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 38319 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 324-531 chr8 88914192 88914466 + 2 NA Intergenic L2a|LINE|L2 -586846 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 241-283 chr4 178054160 178054303 + 2 NA Intergenic L1M1|LINE|L1 -146295 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 690-50 chr17 66940689 66941248 + 2 NA Intergenic Intergenic -23739 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 357-328 chr5 7445998 7446202 + 2 NA intron (NM_020546, intron 2 of 24) L1MC5a|LINE|L1 49962 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 382-219 chr2 128343250 128343486 + 2 NA Intergenic Intergenic -24500 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 262-397 chr7 51656569 51656723 + 2 NA Intergenic Intergenic -263390 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 484-177 chr3 96363124 96363472 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 3334 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 384-187 chr2 161478597 161478808 + 2 NA Intergenic HAL1b|LINE|L1 29200 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 372-328 chr3 77977144 77977392 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 71695 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 341-91 chr11 85521776 85521987 + 2 NA intron (NM_001142699, intron 3 of 27) THE1C-int|LTR|ERVL-MaLR 105389 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 757-36 chr22 34075430 34075940 + 2 NA Intergenic MIR3|SINE|MIR -152797 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 344-116 chr12 118767958 118768211 + 2 NA Intergenic Intergenic -6405 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 207-201 chr3 131898086 131898275 + 2 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 87751 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 339-282 chr2 154189716 154189909 + 2 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 245418 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 289-176 chr17 40820684 40820859 + 2 NA intron (NM_000421, intron 2 of 7) intron (NM_000421, intron 2 of 7) 1586 NR_160886 147184 Hs.353163 NM_145274 ENSG00000167920 TMEM99 - transmembrane protein 99 (putative) ncRNA 521-262 chr8 139561463 139561823 + 2 NA Intergenic Intergenic 141480 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 262-369 chr6 55104929 55105112 + 2 NA Intergenic Intergenic -1440 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 348-516 chr8 72273983 72274192 + 2 NA Intergenic Intergenic -22453 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 464-222 chr6 137183691 137184033 + 2 NA Intergenic MER41-int|LTR|ERV1 -10218 NM_052962 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 392-125 chr18 57727288 57727532 + 2 NA intron (NM_005603, intron 2 of 27) intron (NM_005603, intron 2 of 27) 75905 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 567-44 chr12 25390421 25390796 + 2 NA Intergenic MER30|DNA|hAT-Charlie -139679 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 331-282 chr2 129385421 129385604 + 2 NA Intergenic L1MD2|LINE|L1 -111621 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 365-332 chr5 125194959 125195305 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 158301 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 233-14 chr1 157323008 157323195 + 2 NA Intergenic L1M4|LINE|L1 -184510 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 502-4 chr1 51264752 51265154 + 2 NA intron (NM_014372, intron 1 of 2) intron (NM_014372, intron 1 of 2) 28680 NM_014372 26994 Hs.309641 NM_014372 ENSG00000123091 RNF11 CGI-123|SID1669 ring finger protein 11 protein-coding 199-208 chr5 141341316 141341457 + 2 NA exon (NM_032009, exon 1 of 1) exon (NM_032009, exon 1 of 1) -2443 NM_018916 56112 Hs.368160 NM_018916 ENSG00000254245 PCDHGA3 PCDH-GAMMA-A3 protocadherin gamma subfamily A, 3 protein-coding 526-142 chr2 166117150 166117523 + 2 NA intron (NR_110260, intron 2 of 11) Charlie1a|DNA|hAT-Charlie 10684 NM_001165964 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 539-207 chr8 93254192 93254532 + 2 NA Intergenic AluJb|SINE|Alu -87512 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 316-280 chr2 115052433 115052652 + 2 NA intron (NM_001321910, intron 2 of 26) L1MB5|LINE|L1 -12031 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 388-20 chr1 181899173 181899490 + 2 NA Intergenic MER34A|LTR|ERV1 162381 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 240-448 chrX 83254807 83255025 + 2 NA Intergenic L1PB3|LINE|L1 -253374 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 308-380 chr5 46270151 46270317 + 2 NA Intergenic ALR/Alpha|Satellite|centr -573854 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 189-107 chr2 235006114 235006221 + 2 NA intron (NM_001371304, intron 2 of 5) intron (NM_001371304, intron 2 of 5) -21568 NM_001371306 208-11 chr1 163977184 163977352 + 2 NA Intergenic L2|LINE|L2 -554077 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 827-30 chr21 33320408 33321024 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -4254 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 412-196 chr22 26090415 26090717 + 2 NA Intergenic Intergenic -78896 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 241-132 chr16 30869276 30869465 + 2 NA intron (NM_001286526, intron 5 of 5) AluJb|SINE|Alu 5953 NR_039744 100616231 NR_039744 ENSG00000265991 MIR4519 - microRNA 4519 ncRNA 734-14 chr11 80435869 80436575 + 2 NA Intergenic Intergenic 326581 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 304-57 chr10 80873281 80873471 + 2 NA Intergenic L1MA5A|LINE|L1 223579 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 299-451 chr8 88211920 88212099 + 2 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 115474 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 305-35 chr1 181289893 181290121 + 2 NA Intergenic Intergenic 53619 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 298-363 chr5 51942708 51942871 + 2 NA Intergenic L1MB7|LINE|L1 -65242 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 317-190 chr17 58281791 58282072 + 2 NA promoter-TSS (NM_000250) promoter-TSS (NM_000250) -996 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 356-477 chr8 84966341 84966600 + 2 NA Intergenic Intergenic -140768 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 482-33 chr10 65996338 65996778 + 2 NA intron (NM_001127384, intron 15 of 17) L1MA4A|LINE|L1 425133 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 291-491 chr9 78520515 78520781 + 2 NA Intergenic L1M2|LINE|L1 223523 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 215-149 chr2 80334947 80335076 + 2 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 21632 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 417-237 chr6 51831205 51831435 + 2 NA intron (NM_138694, intron 51 of 66) L1ME4a|LINE|L1 209450 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 476-128 chr19 37031888 37032228 + 2 NA Intergenic AluSz|SINE|Alu -46164 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 358-477 chr8 84170104 84170307 + 2 NA Intergenic L1PA17|LINE|L1 -12582 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 430-238 chr5 26743939 26744295 + 2 NA Intergenic Intergenic 294469 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 532-153 chr3 2961886 2962232 + 2 NA intron (NM_175607, intron 13 of 24) intron (NM_175607, intron 13 of 24) 69844 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 346-474 chr7 141095717 141095925 + 2 NA intron (NM_001195278, intron 1 of 3) MIRc|SINE|MIR 21757 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 219-225 chr22 48997225 48997383 + 2 NA Intergenic L1ME1|LINE|L1 130534 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 552-37 chr12 2448958 2449392 + 2 NA intron (NM_199460, intron 4 of 49).2 MER61A|LTR|ERV1 179399 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 571-169 chr8 64181531 64182062 + 2 NA intron (NR_125826, intron 1 of 4) L1MA9|LINE|L1 186762 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 148-65 chr4 84413138 84413252 + 2 NA Intergenic MIR|SINE|MIR 85039 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 144-74 chr4 176556628 176556735 + 2 NA Intergenic Intergenic 236241 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 320-105 chr11 124146978 124147237 + 2 NA TTS (NM_014622) TTS (NM_014622) 31657 NM_001130142 4013 Hs.152944 NM_014622 ENSG00000110002 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 160-60 chr3 30240584 30240717 + 2 NA Intergenic Intergenic -278218 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 377-160 chr17 63586895 63587166 + 2 NA intron (NR_073585, intron 6 of 7) intron (NR_073585, intron 6 of 7) -13865 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 343-420 chr5 35537404 35537659 + 2 NA Intergenic AluSx|SINE|Alu -80332 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 191-177 chr5 124764555 124764716 + 2 NA Intergenic Intergenic -19523 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 512-180 chr4 16509690 16510033 + 2 NA intron (NM_001304435, intron 6 of 7) AluJb|SINE|Alu 283198 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 393-65 chr12 8648371 8648696 + 2 NA non-coding (NR_123733, exon 10 of 11) non-coding (NR_123733, exon 10 of 11) 14293 NR_123733 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 380-217 chr20 41714610 41714959 + 2 NA Intergenic Intergenic -96407 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 396-88 chr12 58450706 58450937 + 2 NA Intergenic L1M5|LINE|L1 -140881 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 466-272 chr8 110008590 110008917 + 2 NA Intergenic L1M1|LINE|L1 -32982 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 347-65 chr11 11226206 11226471 + 2 NA Intergenic Intergenic 126912 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 297-334 chr4 68028662 68028909 + 2 NA Intergenic Intergenic -24723 NR_046116 550113 Hs.130270 NR_046116 LOC550113 - uncharacterized LOC550113 ncRNA 770-3 chr10 47285762 47286454 + 2 NA Intergenic Intergenic -14089 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 521-261 chr8 135142630 135143064 + 2 NA Intergenic Intergenic -91284 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 291-182 chr18 3662585 3662764 + 2 NA intron (NM_001308390, intron 4 of 10) MLT1H1-int|LTR|ERVL-MaLR 58937 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 477-131 chr19 30882865 30883256 + 2 NA Intergenic Intergenic -284450 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 175-98 chr22 45339032 45339188 + 2 NA intron (NM_001104595, intron 9 of 9) intron (NM_001104595, intron 9 of 9) 20667 NM_001349913 55007 Hs.265018 NM_017911 ENSG00000100376 FAM118A C22orf8 family with sequence similarity 118 member A protein-coding 370-90 chr11 79785581 79785858 + 2 NA Intergenic L1ME1|LINE|L1 -344689 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 403-126 chr16 83062832 83063212 + 2 NA intron (NM_001220489, intron 3 of 12) AluSx|SINE|Alu -72724 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 368-70 chr11 5437938 5438226 + 2 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 3471 NM_001005288 390063 Hs.553732 NM_001005288 ENSG00000167359 OR51I1 - olfactory receptor family 51 subfamily I member 1 protein-coding 258-410 chr8 123923371 123923574 + 2 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 71485 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 896-9 chr14 72219826 72220390 + 2 NA intron (NM_001370288, intron 2 of 16) L1PREC2|LINE|L1 286581 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 372-268 chr2 193672588 193672858 + 2 NA Intergenic L1MEg|LINE|L1 -671546 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 335-392 chr4 98487558 98487775 + 2 NA intron (NM_005723, intron 2 of 7) intron (NM_005723, intron 2 of 7) 170945 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 312-265 chr2 138415801 138416052 + 2 NA Intergenic L1MC4a|LINE|L1 -85844 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 326-523 chr8 59985969 59986177 + 2 NA Intergenic L1MA8|LINE|L1 295327 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 207-11 chr1 76608317 76608520 + 2 NA intron (NR_146056, intron 4 of 5) L2a|LINE|L2 170849 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 303-86 chr12 19589097 19589271 + 2 NA Intergenic MIRc|SINE|MIR 148585 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 294-284 chr3 21270413 21270590 + 2 NA Intergenic Intergenic -135225 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 529-219 chr8 114121550 114122037 + 2 NA Intergenic (AATTA)n|Simple_repeat|Simple_repeat -684854 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 536-27 chr10 5121486 5121988 + 2 NA Intergenic Intergenic 27323 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 715-41 chr2 146290186 146290698 + 2 NA Intergenic Intergenic -296615 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 253-389 chr7 83184795 83184949 + 2 NA Intergenic L1MC3|LINE|L1 -21988 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 210-268 chr7 46050211 46050381 + 2 NA Intergenic Intergenic -129024 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 612-116 chr5 121405801 121406215 + 2 NA Intergenic L1M5|LINE|L1 83458 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 338-343 chr3 88593016 88593243 + 2 NA Intergenic L2|LINE|L2 254673 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 438-185 chr3 188598341 188598599 + 2 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) -29804 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 299-341 chr4 155714888 155715077 + 2 NA intron (NM_001130685, intron 7 of 9) intron (NM_001130685, intron 7 of 9) -44039 NM_001291953 2983 Hs.77890 NM_000857 ENSG00000061918 GUCY1B1 GC-S-beta-1|GC-SB3|GUC1B3|GUCB3|GUCSB3|GUCY1B3 guanylate cyclase 1 soluble subunit beta 1 protein-coding 343-259 chr2 116086557 116086834 + 2 NA Intergenic Intergenic 742880 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 320-98 chr11 104618524 104618817 + 2 NA Intergenic Intergenic -9368 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 239-406 chr8 87209259 87209479 + 2 NA intron (NM_173538, intron 5 of 10) L1M2|LINE|L1 342954 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 220-41 chr10 26442858 26443034 + 2 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 4605 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 329-393 chr3 193161176 193161411 + 2 NA Intergenic Intergenic -79929 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 215-68 chr12 99126780 99126952 + 2 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) 27900 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 184-102 chr2 182223358 182223515 + 2 NA intron (NM_005019, intron 7 of 14) intron (NM_005019, intron 7 of 14) 18627 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 281-452 chr8 142084371 142084584 + 2 NA Intergenic L1MCa|LINE|L1 -91862 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 370-206 chr19 52311791 52312100 + 2 NA intron (NM_001297625, intron 2 of 3) intron (NM_001297625, intron 2 of 3) 14776 NM_144684 147657 Hs.729317 NM_144684 ENSG00000198464 ZNF480 - zinc finger protein 480 protein-coding 202-76 chr14 82015089 82015244 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR -272028 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 299-259 chr20 53017422 53017651 + 2 NA intron (NM_173485, intron 1 of 2) MER113A|DNA|hAT-Charlie 45178 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 296-424 chr6 162228147 162228366 + 2 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -498876 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 534-117 chr2 83395869 83396301 + 2 NA Intergenic MER110|LTR|ERV1 -126729 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 262-264 chr21 29927388 29927556 + 2 NA intron (NM_000830, intron 1 of 16) (TA)n|Simple_repeat|Simple_repeat 12524 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 880-43 chr7 62586385 62587001 + 2 NA Intergenic ALR/Alpha|Satellite|centr 717363 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 419-77 chr12 113517790 113518125 + 2 NA Intergenic AluJr4|SINE|Alu 45954 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 366-360 chr5 167466746 167467040 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -106766 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 289-456 chr8 21235163 21235385 + 2 NA Intergenic L1ME4a|LINE|L1 -62965 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 339-341 chr22 38789365 38789602 + 2 NA intron (NM_005740, intron 1 of 3) AluJb|SINE|Alu 4660 NM_005740 10126 Hs.632766 NM_005740 ENSG00000100246 DNAL4 MRMV3|PIG27 dynein axonemal light chain 4 protein-coding 216-260 chr4 129066061 129066205 + 2 NA intron (NM_001300898, intron 2 of 5) intron (NM_001300898, intron 2 of 5) 27406 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 384-76 chr12 34704127 34704425 + 2 NA Intergenic ALR/Alpha|Satellite|centr 681780 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 634-34 chr11 114937829 114938399 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 259587 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 263-46 chr10 49273289 49273442 + 2 NA Intergenic Intergenic 25528 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 368-163 chr15 70023824 70024056 + 2 NA Intergenic Intergenic 55528 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 536-47 chr11 50516845 50517359 + 2 NA Intergenic ALR/Alpha|Satellite|centr 107955 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 233-331 chr6 46899882 46900020 + 2 NA intron (NM_001098518, intron 3 of 20) intron (NM_001098518, intron 3 of 20) -3520 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 512-125 chr2 113097460 113097959 + 2 NA Intergenic L1PB1|LINE|L1 -20184 NM_173841 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 269-231 chr21 25321397 25321552 + 2 NA Intergenic Intergenic 110227 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 367-383 chr5 179058426 179058618 + 2 NA Intergenic AluSx|SINE|Alu -1851 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 560-11 chr10 13552570 13552974 + 2 NA Intergenic L1M4a1|LINE|L1 -23758 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 158-36 chr15 96020072 96020214 + 2 NA Intergenic Intergenic 107698 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 299-13 chr1 77430152 77430408 + 2 NA intron (NM_012093, intron 8 of 13) L2a|LINE|L2 147193 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 185-57 chr14 27141410 27141583 + 2 NA Intergenic Intergenic 232854 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 444-123 chr2 120644998 120645437 + 2 NA Intergenic AluJr|SINE|Alu -90651 NM_001371271 238-274 chr4 104302300 104302480 + 2 NA Intergenic L1MC3|LINE|L1 -188575 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 218-176 chr2 169304386 169304557 + 2 NA intron (NM_004525, intron 4 of 78) MIRc|SINE|MIR 58063 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 306-57 chr10 74816653 74816876 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -8491 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 294-98 chr13 53874228 53874410 + 2 NA non-coding (NR_047488, exon 6 of 6) non-coding (NR_047488, exon 6 of 6) 58900 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 215-288 chr7 10175166 10175299 + 2 NA Intergenic L1MDa|LINE|L1 -527444 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 371-323 chr5 116433747 116434002 + 2 NA Intergenic L1MA9|LINE|L1 -13624 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 450-116 chr18 44007030 44007381 + 2 NA Intergenic Intergenic 524492 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 413-10 chr1 72563466 72563763 + 2 NA Intergenic Intergenic -281075 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 262-27 chr1 223643835 223643985 + 2 NA intron (NM_001143962, intron 2 of 20) intron (NM_001143962, intron 2 of 20) 21791 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 326-440 chr6 1192029 1192196 + 2 NA Intergenic Intergenic -90780 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 146-62 chr4 53459605 53459730 + 2 NA TTS (NM_032622) TTS (NM_032622) -40410 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 481-32 chr10 61098228 61098611 + 2 NA Intergenic Intergenic 82144 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 434-43 chr10 110806121 110806408 + 2 NA intron (NM_001134363, intron 7 of 13) AluSx1|SINE|Alu 64640 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 230-271 chr4 106348663 106348819 + 2 NA 3' UTR (NM_004757, exon 7 of 7) 3' UTR (NM_004757, exon 7 of 7) 18694 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 211-250 chr5 166696475 166696658 + 2 NA Intergenic Intergenic 229804 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 373-35 chr1 229186045 229186245 + 2 NA Intergenic LTR45B|LTR|ERV1 -11344 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 215-224 chr4 71875850 71876014 + 2 NA Intergenic L1M2|LINE|L1 -70412 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 395-170 chr2 79331108 79331391 + 2 NA Intergenic Intergenic 169595 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 296-363 chr5 35961700 35961859 + 2 NA 3' UTR (NM_001171873, exon 6 of 6) 3' UTR (NM_001171873, exon 6 of 6) 22978 NR_104630 100506406 Hs.116864 NR_104630 ENSG00000249748 LOC100506406 - uncharacterized LOC100506406 ncRNA 282-87 chr12 13594684 13594942 + 2 NA intron (NM_000834, intron 9 of 12) Tigger19b|DNA|TcMar-Tigger -218068 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 193-37 chr11 61930247 61930360 + 2 NA Intergenic L1MB3|LINE|L1 -10019 NM_001271686 5866 Hs.13759 NM_013401 ENSG00000167994 RAB3IL1 GRAB RAB3A interacting protein like 1 protein-coding 421-42 chr11 88690415 88690785 + 2 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 186024 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 542-110 chr2 204813821 204814217 + 2 NA intron (NM_205863, intron 2 of 21) L1ME2|LINE|L1 268544 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 432-11 chr1 157733497 157733735 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -32847 NR_135216 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 186-5 chr1 79346556 79346737 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -339916 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 371-261 chr3 173959236 173959469 + 2 NA intron (NM_001365928, intron 4 of 6) MLT1J|LTR|ERVL-MaLR -38556 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 243-134 chr14 87380033 87380209 + 2 NA Intergenic Intergenic 275173 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 473-168 chr22 39193930 39194293 + 2 NA Intergenic AluJb|SINE|Alu -41431 NM_001346743 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 138-58 chr4 115399239 115399331 + 2 NA Intergenic Intergenic -285665 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 468-200 chr3 79905335 79905638 + 2 NA Intergenic Intergenic -137488 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 541-125 chr2 136331031 136331511 + 2 NA Intergenic Intergenic -213116 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 202-207 chr5 52411479 52411637 + 2 NA Intergenic L2b|LINE|L2 -376358 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 514-15 chr1 198217344 198217646 + 2 NA intron (NM_133494, intron 1 of 9) L1PB3|LINE|L1 60497 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 346-377 chr5 12408707 12409024 + 2 NA Intergenic L1MA2|LINE|L1 -165992 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 465-322 chrX 79884387 79884652 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -130234 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 349-200 chr16 76076540 76076783 + 2 NA Intergenic L1MC1|LINE|L1 -200740 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 377-419 chr8 134367264 134367593 + 2 NA Intergenic Intergenic -230643 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 327-453 chr7 36857629 36857888 + 2 NA intron (NM_001206480, intron 21 of 21) L1MC5|LINE|L1 61674 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 428-136 chr2 114899367 114899761 + 2 NA intron (NM_001321910, intron 2 of 26) L1ME3B|LINE|L1 -66016 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 129-45 chr2 178664136 178664228 + 2 NA intron (NM_001267550, intron 168 of 362) intron (NM_001267550, intron 168 of 362) -112744 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 468-88 chr15 46139341 46139778 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 434364 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 973-2 chr10 20386297 20386974 + 2 NA Intergenic Intergenic -165335 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 256-102 chr13 53588255 53588484 + 2 NA Intergenic Intergenic -227050 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 727-45 chr2 58237318 58237961 + 2 NA intron (NM_001114636, intron 1 of 13) L1MEc|LINE|L1 3741 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 237-121 chr15 65291406 65291574 + 2 NA Intergenic AluSz6|SINE|Alu -4561 NR_002756 26831 NR_002756 ENSG00000199568 RNU5A-1 RNU5|RNU5A|RNU5C|U5A|U5B1 RNA, U5A small nuclear 1 snRNA 352-483 chr7 16841085 16841348 + 2 NA Intergenic Intergenic -36217 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 441-111 chr2 3221902 3222336 + 2 NA intron (NM_001330531, intron 3 of 7) intron (NM_001330531, intron 3 of 7) -96093 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 332-151 chr14 56468570 56468778 + 2 NA Intergenic L1M2|LINE|L1 -45657 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 570-176 chr7 21001097 21001608 + 2 NA intron (NR_126381, intron 2 of 5) MLT1J|LTR|ERVL-MaLR 165921 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 714-61 chr5 120731704 120732393 + 2 NA Intergenic MER21-int|LTR|ERVL 200584 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 456-224 chr4 66780012 66780457 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 503410 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 277-365 chr6 164372057 164372233 + 2 NA Intergenic L3b|LINE|CR1 449918 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 598-131 chr7 62915068 62915505 + 2 NA Intergenic ALR/Alpha|Satellite|centr 388770 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 630-29 chr14 43771502 43772103 + 2 NA Intergenic AluSp|SINE|Alu 735481 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 417-243 chr6 88343666 88344029 + 2 NA Intergenic L2b|LINE|L2 -176498 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 671-109 chr9 91438382 91438865 + 2 NA Intergenic L1MA9|LINE|L1 -13997 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 439-3 chr1 50073310 50073663 + 2 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) 25431 NM_001324208 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 255-196 chr2 64270941 64271102 + 2 NA Intergenic Intergenic 42620 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 244-170 chr2 108072256 108072464 + 2 NA Intergenic MIR|SINE|MIR -19605 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 725-63 chrX 67134609 67135063 + 2 NA Intergenic L1MB3|LINE|L1 -409185 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 389-95 chr13 93920817 93921124 + 2 NA intron (NM_005708, intron 3 of 8) intron (NM_005708, intron 3 of 8) -62497 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 397-87 chr14 52379541 52379812 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 65364 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 340-453 chr5 77187529 77187733 + 2 NA intron (NM_001349752, intron 1 of 21) intron (NM_001349752, intron 1 of 21) 7327 NM_001349752 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 301-150 chr16 78078309 78078578 + 2 NA Intergenic Intergenic -21211 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 263-40 chr10 27882890 27883109 + 2 NA intron (NM_001290021, intron 10 of 13) L1M4|LINE|L1 98872 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 402-119 chr18 7712261 7712555 + 2 NA intron (NM_002845, intron 1 of 30) L1P3|LINE|L1 145092 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 365-101 chr12 71657084 71657312 + 2 NA exon (NM_144982, exon 2 of 35) exon (NM_144982, exon 2 of 35) 6650 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 311-227 chr19 29110763 29110954 + 2 NA Intergenic Intergenic 102293 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 322-465 chr6 100525720 100526038 + 2 NA intron (NM_006828, intron 37 of 41) intron (NM_006828, intron 37 of 41) -62204 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 324-348 chr3 74040783 74041014 + 2 NA Intergenic Intergenic 231654 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 408-152 chr2 29783424 29783748 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 138000 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 139-12 chr10 115157634 115157762 + 2 NA intron (NM_001276282, intron 5 of 7) MLT1D|LTR|ERVL-MaLR 64333 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 369-186 chr2 22421533 22421744 + 2 NA Intergenic Intergenic -114841 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 588-162 chr8 111940868 111941337 + 2 NA Intergenic Intergenic 564463 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 334-572 chr9 97405576 97405854 + 2 NA Intergenic Intergenic -6381 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 284-248 chr21 32166091 32166295 + 2 NA Intergenic L1MC3|LINE|L1 -79898 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 377-316 chr5 28186969 28187286 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 100538 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 291-415 chr7 62676445 62676722 + 2 NA Intergenic ALR/Alpha|Satellite|centr 627473 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 340-77 chr11 74872685 74872864 + 2 NA intron (NM_001270381, intron 8 of 15) HUERS-P3-int|LTR|ERV1 76317 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 502-144 chr2 123591163 123591536 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 433825 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 573-188 chr7 98552826 98553278 + 2 NA Intergenic AluSc|SINE|Alu -64233 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 225-123 chr17 27392298 27392478 + 2 NA Intergenic L1ME2|LINE|L1 -25617 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 262-364 chr6 45732170 45732383 + 2 NA Intergenic Intergenic 205321 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 379-262 chr5 46265693 46265921 + 2 NA Intergenic ALR/Alpha|Satellite|centr -569427 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 271-260 chr3 26644182 26644331 + 2 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) 19589 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 509-38 chr11 37523141 37523635 + 2 NA Intergenic L1MC3|LINE|L1 -415213 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 208-130 chr2 155127002 155127139 + 2 NA Intergenic Intergenic 428375 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 208-263 chr8 100619805 100619957 + 2 NA intron (NM_152628, intron 4 of 13) MER105|DNA|hAT-Charlie -1476 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 545-181 chr5 38761915 38762444 + 2 NA intron (NR_109951, intron 2 of 3) MIR|SINE|MIR -41906 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 272-178 chr2 31794221 31794434 + 2 NA non-coding (NR_146994, exon 3 of 4) non-coding (NR_146994, exon 3 of 4) 9653 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 360-331 chr4 68018043 68018368 + 2 NA Intergenic Intergenic -20766 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 449-239 chr6 64614211 64614554 + 2 NA intron (NM_001292009, intron 24 of 43) L1MCb|LINE|L1 -687036 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 247-364 chr6 100082288 100082460 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -88136 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 259-130 chr14_KI270722v1_random 177308 177500 + 2 NA NA HERV3-int|LTR|ERV1 NA NA 371-269 chr4 34508316 34508545 + 2 NA Intergenic MER67D|LTR|ERV1 -238683 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 424-165 chr21 31703029 31703427 + 2 NA intron (NM_020706, intron 4 of 19) intron (NM_020706, intron 4 of 19) 28890 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 352-453 chr6 53189996 53190213 + 2 NA Intergenic Intergenic -41263 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 358-171 chr18 72418101 72418306 + 2 NA Intergenic Intergenic 126139 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 332-425 chr5 110976842 110977043 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -93138 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 288-446 chr8 106673685 106673900 + 2 NA intron (NM_181354, intron 1 of 13) THE1D-int|LTR|ERVL-MaLR 15984 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 335-98 chr11 81135311 81135516 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -372610 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 174-110 chr5 53877412 53877541 + 2 NA Intergenic Intergenic -57794 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 340-472 chr6 40569194 40569428 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 18053 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 475-43 chr11 90505930 90506237 + 2 NA intron (NR_104190, intron 1 of 6) HAL1ME|LINE|L1 49774 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 286-467 chr8 129452476 129452643 + 2 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 31583 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 316-528 chr7 118738427 118738736 + 2 NA Intergenic Intergenic 513877 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 328-105 chr12 40426096 40426363 + 2 NA intron (NM_173600, intron 17 of 173) intron (NM_173600, intron 17 of 173) 32835 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 512-11 chr1 181642101 181642510 + 2 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 158788 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 403-286 chr7 73490009 73490342 + 2 NA intron (NM_001370402, intron 5 of 18) MER5A|DNA|hAT-Charlie 32118 NM_032408 9031 Hs.743372 NM_023005 ENSG00000009954 BAZ1B WBSCR10|WBSCR9|WSTF bromodomain adjacent to zinc finger domain 1B protein-coding 214-207 chr3 78059756 78059903 + 2 NA Intergenic Intergenic -10866 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 310-171 chr16 50802509 50802797 + 2 NA TTS (NM_001042412) TTS (NM_001042412) -4019 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 225-183 chr20 55420744 55420923 + 2 NA non-coding (NR_110064, exon 3 of 3) non-coding (NR_110064, exon 3 of 3) -2210 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 318-141 chr12 46865562 46865739 + 2 NA Intergenic HERVL-int|LTR|ERVL -39653 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 533-107 chr2 139416170 139416540 + 2 NA Intergenic L1ME2|LINE|L1 519031 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 246-213 chr2 177528149 177528353 + 2 NA intron (NM_003659, intron 19 of 19) L2a|LINE|L2 24545 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 400-239 chr4 25087141 25087516 + 2 NA Intergenic Intergenic -56382 NM_018176 55203 Hs.12488 NM_018176 ENSG00000153012 LGI2 LGIL2 leucine rich repeat LGI family member 2 protein-coding 167-93 chr5 45842668 45842805 + 2 NA Intergenic L1MD|LINE|L1 -146356 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 273-239 chr2 163222051 163222234 + 2 NA Intergenic L1MA2|LINE|L1 -383375 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 276-39 chr1 246098422 246098675 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 318864 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 378-3 chr1 35854532 35854812 + 2 NA 3' UTR (NM_017629, exon 18 of 18) 3' UTR (NM_017629, exon 18 of 18) -15136 NM_001317123 26523 Hs.22867 NM_012199 ENSG00000092847 AGO1 EIF2C|EIF2C1|GERP95|Q99|hAgo1 argonaute RISC component 1 protein-coding 326-487 chr7 33877043 33877330 + 2 NA Intergenic Intergenic -27729 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 313-521 chr8 68632607 68632804 + 2 NA intron (NR_146186, intron 7 of 12) THE1D-int|LTR|ERVL-MaLR -301214 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 343-245 chr2 77693056 77693248 + 2 NA Intergenic MER89|LTR|ERV1 -170719 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 237-270 chr4 91580916 91581058 + 2 NA intron (NM_001145065, intron 10 of 10) MIR|SINE|MIR 696315 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 354-36 chr1 233928197 233928426 + 2 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 23635 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 435-75 chr14 47802332 47802663 + 2 NA Intergenic L1MC|LINE|L1 -7483 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 309-198 chr17 33590762 33591005 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -57123 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 510-108 chr17 74477103 74477456 + 2 NA intron (NM_007261, intron 3 of 6) AluJo|SINE|Alu 10645 NM_007261 11314 Hs.9688 NM_007261 ENSG00000167851 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 334-373 chr4 35326777 35327014 + 2 NA Intergenic Intergenic 917044 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 477-92 chr14 69635962 69636276 + 2 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 24523 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 347-415 chr5 144532207 144532465 + 2 NA Intergenic Intergenic 326945 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 563-158 chr6 64756983 64757464 + 2 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -544195 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 322-332 chr3 94362438 94362698 + 2 NA Intergenic Intergenic 299507 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 367-321 chr4 32041594 32041847 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -19298 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 475-70 chr13 58075594 58075980 + 2 NA Intergenic Intergenic -90040 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 582-17 chr11 79265945 79266419 + 2 NA intron (NM_001098816, intron 2 of 33) L2c|LINE|L2 135927 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 135-8 chr10 36594817 36594924 + 2 NA Intergenic Intergenic -530987 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 317-130 chr13 93296080 93296351 + 2 NA intron (NM_005708, intron 1 of 8) L2|LINE|L2 69408 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 228-213 chr3 64338849 64338995 + 2 NA Intergenic L1MB8|LINE|L1 -70749 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 336-346 chr21 41434693 41434942 + 2 NA intron (NM_001144925, intron 7 of 18) L1MEc|LINE|L1 2767 NM_001282920 4599 Hs.517307 NM_002462 ENSG00000157601 MX1 IFI-78K|IFI78|MX|MxA MX dynamin like GTPase 1 protein-coding 406-134 chr2 21910102 21910305 + 2 NA Intergenic Intergenic -199551 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 232-227 chr22 26040011 26040212 + 2 NA Intergenic L1PB2|LINE|L1 -129351 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 315-207 chr19 31170884 31171099 + 2 NA intron (NR_147209, intron 2 of 4) intron (NR_147209, intron 2 of 4) 3481 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 290-307 chr4 40091031 40091178 + 2 NA intron (NM_001318359, intron 2 of 18) L1MD1|LINE|L1 -33905 NR_027277 344967 Hs.534633 NR_027277 ENSG00000205794 LOC344967 - acyl-CoA thioesterase 7 pseudogene pseudo 204-14 chr1 192927887 192928044 + 2 NA Intergenic L1ME4b|LINE|L1 20292 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 671-111 chrX 74851342 74851838 + 2 NA intron (NM_001008537, intron 1 of 3) L1M2|LINE|L1 73862 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 178-156 chr8 138062312 138062460 + 2 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 21159 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 329-417 chr4 102437508 102437811 + 2 NA intron (NR_136202, intron 2 of 4) AluJb|SINE|Alu -63700 NM_003998 4790 Hs.618430 NM_003998 ENSG00000109320 NFKB1 CVID12|EBP-1|KBF1|NF-kB1|NF-kappa-B1|NF-kappaB|NFKB-p105|NFKB-p50|NFkappaB|p105|p50 nuclear factor kappa B subunit 1 protein-coding 369-172 chr19 13678527 13678863 + 2 NA Intergenic Intergenic -53057 NM_001320567 81576 Hs.24998 NM_030818 ENSG00000104957 CCDC130 - coiled-coil domain containing 130 protein-coding 410-33 chr10 51147547 51147949 + 2 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 73261 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 342-173 chr16 3345531 3345754 + 2 NA Intergenic L1ME5|LINE|L1 -10247 NM_012368 4993 Hs.258574 NM_012368 ENSG00000168158 OR2C1 OLFmf3|OR2C2P olfactory receptor family 2 subfamily C member 1 protein-coding 469-17 chr1 170933381 170933778 + 2 NA Intergenic L1M4a2|LINE|L1 -1892 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 362-57 chr10 43540731 43540997 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 27595 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 353-522 chr8 72975764 72975987 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -32989 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 216-213 chr3 44116136 44116304 + 2 NA Intergenic Intergenic 2008 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 481-204 chr3 118100988 118101339 + 2 NA Intergenic LTR54|LTR|ERV1 -410238 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 243-333 chr4 100754535 100754705 + 2 NA Intergenic L1MA1|LINE|L1 -79507 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 347-12 chr1 68554378 68554630 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -57422 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 433-124 chr19 43965844 43966140 + 2 NA exon (NM_001297588, exon 5 of 5) exon (NM_001297588, exon 5 of 5) 14747 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 335-497 chr7 40209400 40209580 + 2 NA intron (NM_024728, intron 6 of 14) AluSx3|SINE|Alu 74514 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 440-269 chr9 79731492 79731864 + 2 NA Intergenic Intergenic -92852 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 281-8 chr1 88383421 88383698 + 2 NA Intergenic Intergenic -300585 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 482-187 chr4 73958912 73959310 + 2 NA Intergenic L1PA4|LINE|L1 22916 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 312-258 chr2 125896281 125896470 + 2 NA Intergenic Intergenic 221610 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 495-64 chr14 82143449 82143750 + 2 NA Intergenic Intergenic -400461 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 204-146 chr2 80939103 80939251 + 2 NA Intergenic Intergenic 527769 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 356-436 chr6 142735404 142735659 + 2 NA Intergenic Intergenic -97642 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 300-330 chr4 90501829 90502009 + 2 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 266888 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 187-113 chr3 110179427 110179580 + 2 NA Intergenic Intergenic 576675 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 468-10 chr1 114753329 114753633 + 2 NA intron (NM_001007553, intron 1 of 19) intron (NM_001007553, intron 1 of 19) 4503 NM_001242892 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 664-10 chr1 163139101 163139652 + 2 NA Intergenic Intergenic -22299 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 347-312 chr3 105918705 105918953 + 2 NA Intergenic L1M3b|LINE|L1 -49428 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 494-253 chr6 128545697 128546028 + 2 NA Intergenic L1PA11|LINE|L1 -25263 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 347-359 chr4 129713997 129714268 + 2 NA Intergenic Intergenic 57346 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 159-44 chr2 135552680 135552829 + 2 NA intron (NM_001282799, intron 1 of 22) intron (NM_001282799, intron 1 of 22) 21270 NM_015361 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 355-68 chr10 112000445 112000731 + 2 NA Intergenic Intergenic 183177 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 660-64 chr3 68131518 68131960 + 2 NA intron (NM_001252216, intron 2 of 4) MIR|SINE|MIR 127492 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 430-270 chr6 122205149 122205453 + 2 NA Intergenic L2a|LINE|L2 -194250 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 430-318 chr8 122549438 122549733 + 2 NA intron (NR_131202, intron 2 of 3) LTR41|LTR|ERVL 19059 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 117-47 chr9 79084974 79085073 + 2 NA Intergenic L1ME3Cz|LINE|L1 60643 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 299-360 chr5 36889291 36889536 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 12644 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 396-322 chr7 12177261 12177529 + 2 NA Intergenic L1MA9|LINE|L1 -33899 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 371-135 chr16 71274282 71274551 + 2 NA Intergenic L1MC4|LINE|L1 14986 NM_001099642 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 337-566 chr8 137027088 137027325 + 2 NA Intergenic Intergenic 386382 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 328-299 chr2 214601483 214601776 + 2 NA Intergenic Intergenic 91447 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 204-255 chr6 122168359 122168535 + 2 NA Intergenic MIR3|SINE|MIR -231104 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 185-219 chrX 94889946 94890072 + 2 NA Intergenic Intergenic 173217 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 381-357 chr7 63981570 63981942 + 2 NA Intergenic Intergenic -17050 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 236-280 chr5 27466980 27467175 + 2 NA Intergenic Intergenic -5215 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 673-65 chr2 235423904 235424492 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -69845 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 252-262 chr3 61008464 61008614 + 2 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 242913 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 536-176 chr4 131015921 131016303 + 2 NA Intergenic Intergenic 639751 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 244-392 chrX 55306662 55306897 + 2 NA Intergenic L1PA15-16|LINE|L1 26691 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 316-29 chr1 173922888 173923167 + 2 NA Intergenic L1ME4c|LINE|L1 -5649 NM_000488 462 Hs.75599 NM_000488 ENSG00000117601 SERPINC1 AT3|AT3D|ATIII|ATIII-R2|ATIII-T1|ATIII-T2|THPH7 serpin family C member 1 protein-coding 237-110 chr14 71263024 71263201 + 2 NA Intergenic Intergenic -57364 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 356-410 chr5 124434475 124434658 + 2 NA intron (NR_125774, intron 3 of 5) L1MA9|LINE|L1 3954 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 420-179 chr3 30876589 30876894 + 2 NA intron (NM_207359, intron 1 of 14) LTR16C|LTR|ERVL 17920 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 201-10 chr1 112077775 112077889 + 2 NA Intergenic Intergenic 87296 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 265-207 chr2 239356801 239356988 + 2 NA intron (NM_006037, intron 1 of 26) L1ME3A|LINE|L1 -5090 NR_039948 100616360 NR_039948 ENSG00000264292 MIR2467 mir-2467 microRNA 2467 ncRNA 357-239 chr20 39684032 39684244 + 2 NA Intergenic Intergenic -320323 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 394-261 chr5 33978131 33978363 + 2 NA intron (NM_001012509, intron 2 of 5) MER4D|LTR|ERV1 6446 NM_016180 51151 Hs.278962 NM_016180 ENSG00000164175 SLC45A2 1A1|AIM1|MATP|OCA4|SHEP5 solute carrier family 45 member 2 protein-coding 203-196 chr6 10236156 10236311 + 2 NA Intergenic Intergenic -168269 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 486-56 chr12 14454010 14454387 + 2 NA intron (NM_181352, intron 6 of 14) intron (NM_181352, intron 6 of 14) 68917 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 332-220 chr19 9411438 9411622 + 2 NA TTS (NM_001271314) TTS (NM_001271314) 24043 NM_001370397 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 384-146 chr18 13199575 13199844 + 2 NA Intergenic L1MB3|LINE|L1 -19051 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 204-140 chr2 67129882 67130043 + 2 NA intron (NR_038844, intron 6 of 7) L2a|LINE|L2 43516 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 381-339 chr6 112549317 112549641 + 2 NA Intergenic AluSz6|SINE|Alu 202149 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 275-62 chr11 36308190 36308404 + 2 NA intron (NM_001160167, intron 1 of 8) intron (NM_001160167, intron 1 of 8) 12009 NM_001160167 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 195-171 chr4 115213120 115213244 + 2 NA Intergenic Intergenic -99562 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 312-34 chr10 22101616 22101836 + 2 NA Intergenic Intergenic -97996 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 338-413 chr5 14521290 14521562 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 57443 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 298-41 chr10 44437003 44437271 + 2 NA Intergenic L2c|LINE|L2 -52040 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 297-365 chr5 35871539 35871748 + 2 NA intron (NR_120485, intron 4 of 5) intron (NR_120485, intron 4 of 5) 14752 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 273-119 chr13 60694995 60695186 + 2 NA intron (NR_047003, intron 4 of 4) intron (NR_047003, intron 4 of 4) 22135 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 402-186 chr20 52202619 52202828 + 2 NA Intergenic L1ME4b|LINE|L1 -10738 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 385-173 chr2 59157398 59157641 + 2 NA Intergenic Intergenic -60189 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 217-257 chr4 61040799 61040966 + 2 NA Intergenic HAL1ME|LINE|L1 -102774 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 307-153 chr14 89603829 89604028 + 2 NA intron (NM_001085471, intron 1 of 6) L1MEd|LINE|L1 15237 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 302-185 chr18 64091825 64092058 + 2 NA intron (NR_027245, intron 3 of 3) intron (NR_027245, intron 3 of 3) -12150 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 479-90 chr19 22875294 22875767 + 2 NA Intergenic Intergenic 43239 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 335-572 chr9 103483145 103483436 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -158257 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 312-278 chr2 235170207 235170481 + 2 NA Intergenic Intergenic 142609 NM_001371306 149-2 chr1 73220319 73220464 + 2 NA Intergenic Intergenic -85779 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 419-63 chr12 20057938 20058283 + 2 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 43425 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 368-189 chr17 43789431 43789746 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 9153 NM_001136483 284067 Hs.252707 NM_001136483 ENSG00000231256 CFAP97D1 C17orf105 CFAP97 domain containing 1 protein-coding 329-486 chr6 38061026 38061303 + 2 NA intron (NM_021943, intron 2 of 5) L1MEd|LINE|L1 241437 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 353-77 chr11 23329696 23329939 + 2 NA Intergenic L1MA4A|LINE|L1 89373 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 447-81 chr15 70523330 70523707 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -17590 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 630-89 chr3 111785682 111786261 + 2 NA intron (NM_001185106, intron 4 of 4) L3|LINE|CR1 53475 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 848-39 chr6 4568905 4569622 + 2 NA Intergenic L1MEd|LINE|L1 -41302 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 234-117 chr16 9508407 9508578 + 2 NA Intergenic MIRc|SINE|MIR -52987 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 368-199 chr18 140976 141314 + 2 NA Intergenic AluJb|SINE|Alu -17412 NM_005151 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 255-35 chr10 81562004 81562206 + 2 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat -313089 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 393-33 chr10 5542701 5542939 + 2 NA Intergenic L1MD|LINE|L1 -16574 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 337-307 chr20 21698117 21698424 + 2 NA intron (NR_109878, intron 1 of 4) intron (NR_109878, intron 1 of 4) 5315 NR_109878 101929608 Hs.694665 NR_109878 ENSG00000280350 LINC01726 - long intergenic non-protein coding RNA 1726 ncRNA 320-456 chr5 118331477 118331780 + 2 NA Intergenic Intergenic 49054 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 438-245 chr6 137883672 137883963 + 2 NA TTS (NM_001270508) TTS (NM_001270508) -15584 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 WAKMAR2 lnc-TNFAIP3 wound and keratinocyte migration associated lncRNA 2 ncRNA 339-352 chr3 28928712 28928971 + 2 NA Intergenic Intergenic 352098 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 309-160 chr14 81755171 81755376 + 2 NA Intergenic Intergenic -12135 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 272-306 chr4 62719070 62719290 + 2 NA Intergenic Intergenic -557415 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 253-317 chr5 15195759 15195977 + 2 NA intron (NR_109944, intron 2 of 2) MLT1H|LTR|ERVL-MaLR 70692 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 737-90 chrX 58241053 58241634 + 2 NA Intergenic HSAT4|Satellite|centr -330710 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 312-387 chr4 106367944 106368160 + 2 NA promoter-TSS (NM_001195138) promoter-TSS (NM_001195138) -617 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 214-237 chr4 65864549 65864697 + 2 NA Intergenic Intergenic -194128 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 255-135 chr16 5332823 5333014 + 2 NA Intergenic AluSx1|SINE|Alu -235098 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 340-526 chr8 53090983 53091166 + 2 NA Intergenic L1PB1|LINE|L1 151166 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 598-73 chr2 76144279 76144842 + 2 NA Intergenic AluJb|SINE|Alu -433645 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 294-235 chr2 136900892 136901157 + 2 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 135479 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 217-168 chr2 30539801 30540002 + 2 NA intron (NM_182551, intron 4 of 6) MIRb|SINE|MIR 92655 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 425-106 chr16 73489901 73490197 + 2 NA Intergenic Intergenic 103244 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 686-88 chr9 29313052 29313645 + 2 NA Intergenic Intergenic -99747 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 421-151 chr2 153097762 153098112 + 2 NA Intergenic AluSx1|SINE|Alu 379300 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 544-71 chr14 94478343 94478788 + 2 NA Intergenic L1MEc|LINE|L1 -2368 NM_001042518 327657 Hs.317970 NM_175739 ENSG00000170054 SERPINA9 GCET1|SERPINA11|SERPINA11b serpin family A member 9 protein-coding 250-411 chr7 147569192 147569337 + 2 NA intron (NM_014141, intron 11 of 22) intron (NM_014141, intron 11 of 22) -102415 NR_133930 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 289-398 chr5 159174907 159175054 + 2 NA intron (NM_001199383, intron 5 of 10) intron (NM_001199383, intron 5 of 10) 32668 NM_001199382 153830 Hs.349306 NM_144726 ENSG00000145860 RNF145 - ring finger protein 145 protein-coding 265-237 chr3 29091046 29091208 + 2 NA Intergenic MIR|SINE|MIR 189812 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 352-190 chr18 7517339 7517535 + 2 NA Intergenic AluSg7|SINE|Alu -49879 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 142-14 chr12 30241021 30241099 + 2 NA Intergenic Intergenic 436184 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 247-14 chr1 103912906 103913120 + 2 NA Intergenic Intergenic -160010 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 488-256 chr7 41075174 41075522 + 2 NA Intergenic L1M5|LINE|L1 -26256 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 536-75 chr14 79722068 79722499 + 2 NA intron (NR_073547, intron 18 of 20) L2c|LINE|L2 442903 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 279-289 chr4 48305672 48305824 + 2 NA Intergenic L1ME3Cz|LINE|L1 -35781 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 402-329 chr7 125946183 125946422 + 2 NA Intergenic Intergenic -682011 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 211-110 chr17 41464735 41464935 + 2 NA intron (NM_002278, intron 3 of 6) intron (NM_002278, intron 3 of 6) 2551 NM_002278 3882 Hs.41752 NM_002278 ENSG00000108759 KRT32 HA2|HKA2|KRTHA2|hHa2 keratin 32 protein-coding 399-77 chr13 53624494 53624883 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -190731 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 349-369 chr4 52859637 52859889 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -2554 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 257-200 chr2 103804499 103804655 + 2 NA Intergenic Intergenic 603755 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 490-127 chr19 33926477 33926892 + 2 NA Intergenic Intergenic 129814 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 667-50 chr2 113842529 113843024 + 2 NA intron (NR_110174, intron 3 of 4) MIR|SINE|MIR -47158 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 135-51 chr4 24322863 24322960 + 2 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 149994 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 321-149 chr12 127061814 127062113 + 2 NA Intergenic Intergenic -1566 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 524-276 chr9 29227082 29227558 + 2 NA Intergenic L2b|LINE|L2 -13719 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 216-248 chr4 60410300 60410479 + 2 NA Intergenic LFSINE_Vert|SINE|tRNA -512230 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 304-327 chr3 21035720 21035933 + 2 NA Intergenic L1MA8|LINE|L1 -369900 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 200-157 chr20 32440267 32440407 + 2 NA Intergenic MIR|SINE|MIR 43153 NM_001351680 140688 Hs.516978 NM_080616 ENSG00000197183 NOL4L C20orf112|C20orf113 nucleolar protein 4 like protein-coding 369-362 chr6 125285343 125285638 + 2 NA intron (NM_016063, intron 4 of 5) HAL1M8|LINE|L1 16477 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 283-216 chr2 5571927 5572083 + 2 NA Intergenic Intergenic 119113 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 520-144 chr2 66803066 66803512 + 2 NA Intergenic Intergenic -100062 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 148-7 chr1 172050958 172051097 + 2 NA intron (NM_001278252, intron 10 of 14) L2c|LINE|L2 -87781 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 332-405 chr5 21093221 21093477 + 2 NA Intergenic Intergenic -366131 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 360-252 chr2 211862629 211862908 + 2 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 563592 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 487-166 chr20 43007121 43007507 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 38571 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 263-23 chr1 174371257 174371514 + 2 NA intron (NM_001366445, intron 12 of 13) intron (NM_001366445, intron 12 of 13) -76579 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 276-210 chr19 51954767 51954970 + 2 NA intron (NR_103847, intron 1 of 2) ERV24B_Prim-int|LTR|ERV1 5734 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 343-356 chr3 121080820 121081085 + 2 NA intron (NR_145517, intron 5 of 8) L1PBa|LINE|L1 31312 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 280-392 chr7 102989923 102990106 + 2 NA intron (NR_105043, intron 7 of 20) intron (NR_105043, intron 7 of 20) 16584 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 195-184 chr5 10928238 10928394 + 2 NA Intergenic L1MEg|LINE|L1 -167082 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 368-482 chr9 78878851 78879171 + 2 NA Intergenic Intergenic 266655 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 442-48 chr12 2425135 2425501 + 2 NA intron (NM_199460, intron 3 of 49).2 L1ME4a|LINE|L1 155542 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 272-71 chr11 37220732 37220984 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -622579 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 270-53 chr11 39982875 39983113 + 2 NA Intergenic L1MA8|LINE|L1 310136 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 278-422 chr8 115126065 115126307 + 2 NA Intergenic Intergenic 541827 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 248-170 chr2 8287003 8287195 + 2 NA intron (NR_152741, intron 8 of 9) intron (NR_152741, intron 8 of 9) 41320 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 246-440 chrX 42778499 42778680 + 2 NA promoter-TSS (NM_025210) promoter-TSS (NM_025210) -426 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 305-78 chr10 106964823 106965060 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 199765 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 258-274 chr3 177238691 177238937 + 2 NA Intergenic MIR1_Amn|SINE|MIR -41332 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 582-61 chr18 78472478 78472960 + 2 NA Intergenic Intergenic -478992 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 296-22 chr1 212939591 212939777 + 2 NA Intergenic L1MC5a|LINE|L1 -10857 NM_001301056 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 199-222 chr7 25031392 25031542 + 2 NA Intergenic Intergenic -51289 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 468-152 chr2 107487888 107488221 + 2 NA Intergenic Intergenic -41365 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 448-173 chr4 17314764 17315060 + 2 NA Intergenic AluJb|SINE|Alu 5970 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 379-71 chr12 60210917 60211119 + 2 NA Intergenic Intergenic 521648 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 172-45 chr17 5497076 5497195 + 2 NA Intergenic Intergenic 3871 NM_001162371 728392 Hs.104305 NM_001162371 ENSG00000286190 LOC728392 - uncharacterized LOC728392 protein-coding 390-269 chr4 91301050 91301303 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 976126 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 219-98 chr14 49478707 49478888 + 2 NA Intergenic Intergenic 107583 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 378-311 chr4 71630285 71630525 + 2 NA Intergenic L1PB1|LINE|L1 153674 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 715-77 chr6 61812323 61812925 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 238494 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 192-168 chr5 123713671 123713839 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 168338 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 364-183 chr18 35927556 35927902 + 2 NA Intergenic Intergenic 6413 NR_037497 100500864 NR_037497 ENSG00000265641 MIR3929 - microRNA 3929 ncRNA 499-193 chr5 2858400 2858725 + 2 NA Intergenic Intergenic -59292 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 427-45 chr12 40829328 40829723 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 1587 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 252-239 chr21 27592900 27593054 + 2 NA Intergenic Intergenic -129402 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 169-90 chr4 127292152 127292311 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -340726 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 369-437 chr9 8298471 8298796 + 2 NA Intergenic Intergenic 435313 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 386-202 chr20 4297867 4298198 + 2 NA Intergenic MIRb|SINE|MIR -48745 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 297-166 chr16 79733760 79733973 + 2 NA intron (NR_104663, intron 5 of 5) MIRb|SINE|MIR -36605 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 345-61 chr10 52402725 52402932 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 52444 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 476-132 chr2 34078607 34079045 + 2 NA intron (NR_126403, intron 4 of 5) MIRb|SINE|MIR 11600 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 470-20 chr10 27711092 27711410 + 2 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -33364 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 308-491 chr8 78010907 78011188 + 2 NA Intergenic Intergenic -505293 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 427-235 chr6 164802532 164802882 + 2 NA intron (NR_131926, intron 3 of 3) intron (NR_131926, intron 3 of 3) 19356 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 376-237 chr3 28992000 28992242 + 2 NA Intergenic L1ME2|LINE|L1 288818 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 320-422 chr5 18765709 18765924 + 2 NA Intergenic Intergenic 958542 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 170-31 chr12 1707337 1707442 + 2 NA intron (NM_024551, intron 1 of 7).2 L1ME1|LINE|L1 16319 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 353-494 chr7 92941260 92941487 + 2 NA Intergenic Intergenic -104746 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 257-213 chr2 162976763 162976922 + 2 NA Intergenic Intergenic -138075 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 700-90 chr6 69478969 69479496 + 2 NA Intergenic L1MC|LINE|L1 317234 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 243-270 chr22 48197634 48197794 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -76650 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 330-544 chr9 8768587 8768900 + 2 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) -34797 NM_130391 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 333-370 chr3 147576257 147576489 + 2 NA Intergenic Intergenic 155046 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 290-40 chr10 17073107 17073323 + 2 NA intron (NM_001081, intron 17 of 66) L1MEc|LINE|L1 56602 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 271-285 chr3 186421907 186422121 + 2 NA Intergenic L2c|LINE|L2 -18331 NR_151710 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 352-329 chr3 114462565 114462885 + 2 NA intron (NR_121661, intron 1 of 2) intron (NR_121661, intron 1 of 2) 9132 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 435-205 chr5 123825800 123826182 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 280574 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 285-460 chr9 83492105 83492375 + 2 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) -24498 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 320-384 chr4 42368717 42369004 + 2 NA intron (NR_134668, intron 1 of 1) MER33|DNA|hAT-Charlie 22408 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 394-30 chr10 9424603 9424858 + 2 NA Intergenic Intergenic -129137 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 297-262 chr20 20250176 20250459 + 2 NA intron (NM_015585, intron 19 of 26) intron (NM_015585, intron 19 of 26) -117787 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 450-163 chr20 8142720 8143096 + 2 NA intron (NM_182734, intron 1 of 32) intron (NM_182734, intron 1 of 32) 10642 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 211-277 chr7 68777669 68777868 + 2 NA Intergenic AluSx1|SINE|Alu 757515 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 249-228 chr2 217121129 217121341 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -161498 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 456-45 chr11 42726405 42726688 + 2 NA Intergenic MIRc|SINE|MIR -472856 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 294-508 chr9 114074488 114074687 + 2 NA intron (NM_001633, intron 3 of 9) intron (NM_001633, intron 3 of 9) 3713 NM_001633 259 Hs.436911 NM_001633 ENSG00000106927 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 758-39 chr2 58245696 58246114 + 2 NA Intergenic Intergenic -4525 NM_001114636 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 341-127 chr12 106678138 106678319 + 2 NA intron (NM_001206691, intron 4 of 17) intron (NM_001206691, intron 4 of 17) 6472 NR_038912 100505978 Hs.662583 NR_038912 ENSG00000257711 LOC100505978 - uncharacterized LOC100505978 ncRNA 399-46 chr10 128705070 128705340 + 2 NA Intergenic L1MB7|LINE|L1 -207628 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 767-54 chr8 80050379 80051134 + 2 NA intron (NM_001025253, intron 4 of 7) intron (NM_001025253, intron 4 of 7) -20497 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 392-304 chr7 40589035 40589361 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 390741 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 344-370 chr4 179479389 179479633 + 2 NA Intergenic MIR|SINE|MIR -1571575 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 345-422 chr5 66426374 66426645 + 2 NA Intergenic Intergenic 85095 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 309-468 chr6 17302663 17302875 + 2 NA Intergenic Intergenic 20068 NM_153020 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 1243-10 chr8 46393116 46393910 + 2 NA Intergenic ALR/Alpha|Satellite|centr 224130 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 628-36 chr12 60318288 60318847 + 2 NA Intergenic L1MEg|LINE|L1 629197 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 294-174 chr18 38387211 38387402 + 2 NA Intergenic Intergenic 730171 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 397-29 chr10 43948834 43949072 + 2 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 36551 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 269-62 chr11 36580886 36581047 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 12953 NM_000448 5896 Hs.73958 NM_000448 ENSG00000166349 RAG1 RAG-1|RNF74 recombination activating 1 protein-coding 285-255 chr22 35308665 35308945 + 2 NA intron (NR_156428, intron 1 of 13) intron (NR_156428, intron 1 of 13) 8911 NM_005488 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 270-259 chr4 35821778 35821986 + 2 NA Intergenic MER67D|LTR|ERV1 422057 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 352-9 chr1 60967646 60967828 + 2 NA intron (NR_110617, intron 1 of 6) intron (NR_110617, intron 1 of 6) 3039 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 244-67 chr12 29100685 29100908 + 2 NA Intergenic Intergenic -48482 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 313-329 chr3 22900742 22900957 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 301729 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 306-490 chr8 21528360 21528524 + 2 NA Intergenic L1MEc|LINE|L1 230203 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 271-192 chr2 29395417 29395602 + 2 NA intron (NM_004304, intron 4 of 28) MER39|LTR|ERV1 79868 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 117-37 chr6 102850933 102851015 + 2 NA Intergenic Intergenic 1451989 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 408-149 chr19 49383007 49383232 + 2 NA intron (NR_110729, intron 1 of 2) L1ME3A|LINE|L1 4962 NR_110729 101928295 Hs.640180 NR_110729 ENSG00000268686 LOC101928295 - uncharacterized LOC101928295 ncRNA 215-185 chr22 27647923 27648094 + 2 NA Intergenic Intergenic 153748 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 253-379 chr7 31977729 31977889 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 92598 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 308-61 chr10 60674869 60675121 + 2 NA intron (NM_001204403, intron 1 of 43) Charlie29a|DNA|hAT-Charlie 58533 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 247-416 chr8 118569138 118569312 + 2 NA intron (NM_001101676, intron 2 of 4) Tigger4b|DNA|TcMar-Tigger -51776 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 239-311 chr5 43841201 43841355 + 2 NA Intergenic Intergenic -238048 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 142-52 chr22 49199396 49199480 + 2 NA Intergenic Intergenic 332668 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 285-180 chr19 51892498 51892640 + 2 NA intron (NM_023074, intron 4 of 4) intron (NM_023074, intron 4 of 4) 4544 NR_110733 101928571 Hs.553920 NR_110733 ENSG00000268095 ZNF649-AS1 - ZNF649 antisense RNA 1 ncRNA 431-37 chr10 51302470 51302724 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 3024 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 434-261 chr7 57926955 57927219 + 2 NA Intergenic ALR/Alpha|Satellite|centr 476910 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 214-102 chr14 78771722 78771890 + 2 NA intron (NR_073547, intron 8 of 20) MER113|DNA|hAT-Charlie 368087 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 326-434 chr5 153255388 153255589 + 2 NA Intergenic Intergenic -235036 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 524-284 chr9 108340298 108340732 + 2 NA Intergenic L1MD|LINE|L1 515471 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 139-90 chr8 106905428 106905506 + 2 NA Intergenic L1MEd|LINE|L1 -135223 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 374-32 chr10 54783857 54784054 + 2 NA intron (NM_001354404, intron 4 of 34) THE1D|LTR|ERVL-MaLR 17276 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 303-204 chr2 52628714 52628966 + 2 NA Intergenic Intergenic 73775 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 368-446 chr8 55920919 55921281 + 2 NA intron (NM_002350, intron 1 of 12) intron (NM_002350, intron 1 of 12) -18245 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 451-106 chr19 28899829 28900206 + 2 NA Intergenic Intergenic -65114 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 230-65 chr11 96705344 96705503 + 2 NA Intergenic MIRb|SINE|MIR 196998 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 466-195 chr5 13346493 13346794 + 2 NA Intergenic Intergenic -313757 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 323-493 chr7 45519522 45519692 + 2 NA Intergenic L1MEf|LINE|L1 -54533 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 314-153 chr13 83228640 83228838 + 2 NA Intergenic Intergenic 653654 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 405-62 chr12 61051053 61051376 + 2 NA Intergenic Intergenic 1141625 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 238-431 chrX 81903299 81903469 + 2 NA Intergenic L1PB3|LINE|L1 701282 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 668-92 chr6 166051430 166051859 + 2 NA Intergenic L1MC1|LINE|L1 -46076 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 295-72 chr11 50620234 50620485 + 2 NA Intergenic ALR/Alpha|Satellite|centr 211212 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 311-86 chr11 93393653 93393925 + 2 NA intron (NM_181645, intron 9 of 13) intron (NM_181645, intron 9 of 13) 63072 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 239-19 chr1 238065984 238066212 + 2 NA Intergenic Intergenic -175176 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 297-254 chr20 7553170 7553324 + 2 NA Intergenic L1MC1|LINE|L1 181639 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 333-192 chr17 70861218 70861462 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 340839 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 289-366 chr5 44544188 44544454 + 2 NA Intergenic Intergenic -34039 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 266-119 chr14 83239400 83239612 + 2 NA Intergenic L1ME3F|LINE|L1 596874 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 308-302 chr3 102061470 102061688 + 2 NA Intergenic Intergenic -102126 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 225-105 chr15 71331515 71331694 + 2 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -142545 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 544-206 chr7 36940463 36940934 + 2 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -21266 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 784-32 chr2 187914030 187914743 + 2 NA Intergenic L1ME3Cz|LINE|L1 -359881 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 259-71 chr11 31732129 31732310 + 2 NA intron (NM_001288726, intron 10 of 11) L1MB1|LINE|L1 68442 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 460-230 chr4 167663225 167663562 + 2 NA Intergenic Intergenic -428803 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 535-147 chr2 220715139 220715527 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -808768 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 261-124 chr15 91389387 91389616 + 2 NA Intergenic L1MA2|LINE|L1 -73838 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 356-343 chr4 11386072 11386356 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 17387 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 417-111 chr17 72516343 72516615 + 2 NA intron (NR_036488, intron 1 of 3) AluJb|SINE|Alu 76325 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 567-122 chr3 122960547 122960954 + 2 NA intron (NM_001256348, intron 1 of 21) L1MB3|LINE|L1 15384 NM_001256347 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 391-101 chr14 54081533 54081872 + 2 NA Intergenic AluJr|SINE|Alu -124811 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 509-155 chr3 121116122 121116504 + 2 NA intron (NR_145517, intron 6 of 8) intron (NR_145517, intron 6 of 8) 66673 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 236-87 chr12 50527722 50527927 + 2 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 22839 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 310-416 chr5 97925251 97925454 + 2 NA Intergenic LTR59|LTR|ERV1 84594 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 331-158 chr14 62351342 62351590 + 2 NA Intergenic L1PA4|LINE|L1 -211493 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 438-129 chr2 112455447 112455828 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -21992 NM_001164463 727851 Hs.469630 NM_001164463 ENSG00000169629 RGPD8 RANBP2L1|RGP8|RanBP2alpha RANBP2 like and GRIP domain containing 8 protein-coding 237-18 chr1 119242718 119242946 + 2 NA intron (NR_125975, intron 4 of 6) L1MA7|LINE|L1 -85420 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 756-26 chr2 56386251 56386683 + 2 NA TTS (NM_001348512) TTS (NM_001348512) -200697 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 365-97 chr12 46865151 46865337 + 2 NA Intergenic HERVL-int|LTR|ERVL -39247 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 334-470 chr6 126895195 126895437 + 2 NA Intergenic ERVL-int|LTR|ERVL -223355 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 285-97 chr12 129054826 129055069 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -54743 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 449-85 chr15 26045016 26045352 + 2 NA intron (NR_040082, intron 2 of 4) LTR12_|LTR|ERV1 -70629 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 183-59 chr16 83695492 83695667 + 2 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 108397 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 446-113 chr16 10278072 10278503 + 2 NA Intergenic LTR40b|LTR|ERVL -95379 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 231-181 chr2 147395373 147395561 + 2 NA Intergenic Intergenic -449050 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 353-514 chr8 52802859 52803054 + 2 NA Intergenic L1ME3G|LINE|L1 -88490 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 352-405 chr5 24024235 24024444 + 2 NA intron (NR_131245, intron 4 of 4) L1PB1|LINE|L1 72991 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 845-25 chr4 108496531 108497083 + 2 NA Intergenic L1MA8|LINE|L1 -60426 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 201-120 chr2 73502947 73503104 + 2 NA intron (NM_015120, intron 10 of 22) L1MC4|LINE|L1 45922 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 251-403 chr8 124887120 124887335 + 2 NA Intergenic AluSx1|SINE|Alu -54781 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 295-154 chr15 71038214 71038382 + 2 NA intron (NM_017691, intron 15 of 15) intron (NM_017691, intron 15 of 15) -103151 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 333-368 chr3 135792887 135793150 + 2 NA Intergenic Intergenic -172710 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 206-91 chr16 76289410 76289580 + 2 NA intron (NR_136213, intron 1 of 23) L3|LINE|CR1 12094 NM_001322191 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 492-149 chr20 16462995 16463367 + 2 NA intron (NM_001199866, intron 12 of 22) LTR9D|LTR|ERV1 110267 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 316-205 chr16 74142441 74142745 + 2 NA Intergenic Intergenic 72928 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 491-204 chr5 32005399 32005800 + 2 NA intron (NM_178140, intron 5 of 24) L1ME4a|LINE|L1 -69440 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 359-39 chr1 229873452 229873700 + 2 NA Intergenic Intergenic 12242 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 366-141 chr15 62486027 62486346 + 2 NA Intergenic L1MC4|LINE|L1 143157 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 448-183 chr4 66374937 66375288 + 2 NA Intergenic Intergenic 98288 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 463-16 chr1 97468601 97469062 + 2 NA intron (NM_000110, intron 13 of 22) intron (NM_000110, intron 13 of 22) -328090 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 186-69 chr18 60779395 60779542 + 2 NA Intergenic L1PA17|LINE|L1 -406693 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 435-123 chr2 80478397 80478744 + 2 NA intron (NM_001282599, intron 3 of 11) L1PB3|LINE|L1 165191 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 208-102 chr19 31822740 31822921 + 2 NA Intergenic Intergenic -203032 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 446-312 chr8 118482262 118482604 + 2 NA intron (NM_001101676, intron 2 of 4) MER2|DNA|TcMar-Tigger -138568 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 351-99 chr12 118351668 118351985 + 2 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 7879 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 175-38 chr11 99148141 99148239 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 127241 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 337-506 chr6 152726632 152726876 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -24043 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 360-3 chr1 30297285 30297599 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -259830 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 265-152 chr18 38150092 38150298 + 2 NA Intergenic L1M5|LINE|L1 493060 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 655-94 chr4 172546784 172547213 + 2 NA intron (NM_001034845, intron 5 of 12) L1MB3|LINE|L1 141919 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 217-262 chr4 83794805 83794963 + 2 NA Intergenic Intergenic 258776 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 566-70 chr17 61709921 61710402 + 2 NA intron (NM_032043, intron 17 of 19) intron (NM_032043, intron 17 of 19) -118942 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 140-13 chr11 25336057 25336145 + 2 NA Intergenic L1ME2z|LINE|L1 839048 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 410-245 chr5 95153367 95153685 + 2 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -71660 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 350-160 chr16 26501127 26501361 + 2 NA Intergenic Intergenic 476007 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 266-261 chr3 114950121 114950326 + 2 NA intron (NM_001348805, intron 3 of 10) Tigger7|DNA|TcMar-Tigger -49598 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 302-396 chr6 160034068 160034260 + 2 NA intron (NM_000876, intron 9 of 47) intron (NM_000876, intron 9 of 47) -26500 NR_047511 100271873 Hs.742166 NR_047511 ENSG00000268257 AIRN AIR|IGF2R-AS|IGF2R-AS1|IGF2RAS|NCRNA00088 antisense of IGF2R non-protein coding RNA ncRNA 296-402 chr6 67453379 67453647 + 2 NA Intergenic Intergenic -601838 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 503-2 chr1 11506845 11507203 + 2 NA intron (NM_020780, intron 3 of 20) AluJr|SINE|Alu 27869 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 305-284 chr2 181236818 181237033 + 2 NA intron (NR_130784, intron 2 of 4) L2c|LINE|L2 68727 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 237-7 chr1 60048778 60048936 + 2 NA intron (NM_152377, intron 3 of 11) L1MC5a|LINE|L1 24913 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 305-182 chr16 65306014 65306264 + 2 NA intron (NR_027755, intron 8 of 8) intron (NR_027755, intron 8 of 8) -129566 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 396-28 chr1 195652041 195652275 + 2 NA Intergenic L1MC1|LINE|L1 436557 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 296-221 chr2 63552137 63552333 + 2 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) 36242 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 417-198 chr4 56878357 56878744 + 2 NA Intergenic Intergenic -29350 NM_005612 5978 Hs.307836 NM_005612 ENSG00000084093 REST DFNA27|GINGF5|HGF5|NRSF|WT6|XBR RE1 silencing transcription factor protein-coding 520-322 chr9 10550276 10550760 + 2 NA intron (NM_002839, intron 2 of 45) LTR16E1|LTR|ERVL 62484 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 278-222 chr2 104986271 104986499 + 2 NA intron (NR_110603, intron 1 of 2) intron (NR_110603, intron 1 of 2) -51684 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 359-278 chr20 19900426 19900759 + 2 NA intron (NM_001242581, intron 2 of 11) FLAM_C|SINE|Alu 11026 NM_018993 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 449-84 chr14 86028060 86028418 + 2 NA intron (NR_110155, intron 1 of 3) MER49|LTR|ERV1 93561 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 300-13 chr1 99283220 99283505 + 2 NA intron (NM_014839, intron 1 of 6) intron (NM_014839, intron 1 of 6) 19070 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 484-213 chr5 58961238 58961604 + 2 NA Intergenic Intergenic 38477 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 303-429 chr7 85312514 85312815 + 2 NA Intergenic L2c|LINE|L2 -108458 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 244-38 chr10 78319453 78319669 + 2 NA Intergenic MIRb|SINE|MIR 52219 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 172-99 chr5 20118082 20118168 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -129925 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 520-182 chr3 22751620 22752119 + 2 NA Intergenic L1MD|LINE|L1 450709 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 342-71 chr10 74966253 74966570 + 2 NA intron (NM_001370135, intron 4 of 9) MLT1E2|LTR|ERVL-MaLR 53625 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 417-316 chrX 98256900 98257224 + 2 NA Intergenic L1MA6|LINE|L1 -692527 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 369-436 chr9 1022892 1023192 + 2 NA Intergenic L1ME1|LINE|L1 -25101 NR_110643 102800446 Hs.171043 NR_110643 LINC01230 TCONS_00015639|linc-DMRT2|lnc-DRMT2 long intergenic non-protein coding RNA 1230 ncRNA 348-342 chr4 30636737 30636945 + 2 NA Intergenic L2a|LINE|L2 -83528 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 318-542 chr8 75598632 75598909 + 2 NA Intergenic L1ME3A|LINE|L1 58802 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 373-297 chr4 130637189 130637557 + 2 NA Intergenic Intergenic 261012 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 498-187 chr4 44404548 44404896 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 44087 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 452-114 chr19 29505593 29505988 + 2 NA intron (NR_040029, intron 1 of 9) AluSx1|SINE|Alu 19962 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 366-140 chr15 60736090 60736323 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 54637 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 329-446 chr5 19136921 19137158 + 2 NA Intergenic Intergenic 749233 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 236-383 chr9 77476806 77477022 + 2 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 29265 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 577-194 chr8 110462730 110463164 + 2 NA Intergenic Intergenic -487176 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 284-340 chr6 15051892 15052067 + 2 NA Intergenic Intergenic -194090 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 316-303 chr2 199997365 199997545 + 2 NA Intergenic Intergenic -41964 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 347-109 chr12 133214632 133214854 + 2 NA TTS (NM_001165882) TTS (NM_001165882) 21093 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 250-50 chr10 89577492 89577643 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 15260 NR_029524 406901 NR_029524 ENSG00000198997 MIR107 MIRN107|miR-107 microRNA 107 ncRNA 296-429 chr7 9695873 9696134 + 2 NA Intergenic (ATAATAT)n|Simple_repeat|Simple_repeat 61733 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 316-4 chr1 37010129 37010302 + 2 NA intron (NM_000831, intron 1 of 15) MIRb|SINE|MIR 24300 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 334-84 chr11 38372524 38372706 + 2 NA Intergenic L1MB1|LINE|L1 273741 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 666-82 chr3 106595743 106596265 + 2 NA Intergenic L1MC|LINE|L1 644634 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 326-292 chr20 19271536 19271712 + 2 NA intron (NR_024564, intron 2 of 7) L1PB1|LINE|L1 12972 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 211-152 chr2 155072951 155073130 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 374345 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 298-517 chrX 85582961 85583133 + 2 NA Intergenic Intergenic -203382 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 315-140 chr14 80618071 80618290 + 2 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 323558 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 453-256 chr7 47014866 47015137 + 2 NA Intergenic Intergenic -317879 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 196-178 chr4 38274190 38274369 + 2 NA Intergenic Intergenic -92635 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 225-15 chr1 193956194 193956352 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 651528 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 585-29 chr12 37293463 37293902 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1023092 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 228-4 chr1 40457792 40457996 + 2 NA intron (NM_001369565, intron 5 of 5) intron (NM_001369565, intron 5 of 5) 7418 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 364-71 chr10 90494975 90495230 + 2 NA intron (NR_110657, intron 2 of 6) L1M3de|LINE|L1 45703 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 198-260 chr9 102449204 102449359 + 2 NA Intergenic L1M1|LINE|L1 -70356 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 430-308 chr8 68835301 68835664 + 2 NA Intergenic L1MC3|LINE|L1 268708 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 205-21 chr1 222532114 222532294 + 2 NA intron (NM_024746, intron 5 of 8) intron (NM_024746, intron 5 of 8) 15900 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 234-118 chr16 12667838 12667988 + 2 NA intron (NM_001099455, intron 2 of 2) L1MEi|LINE|L1 -52408 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 446-31 chr1 245125027 245125424 + 2 NA TTS (NR_026587) TTS (NR_026587) -29760 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 602-101 chr5 17328036 17328474 + 2 NA Intergenic L1M4|LINE|L1 59055 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 456-148 chr2 21919847 21920199 + 2 NA Intergenic Intergenic -209371 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 757-20 chr15 63318073 63318682 + 2 NA Intergenic Intergenic 40772 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 824-36 chr5 18029181 18029709 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 222171 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 310-233 chr2 52677221 52677494 + 2 NA Intergenic Intergenic 25258 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 366-268 chr3 6106276 6106522 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 699050 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 360-194 chr19 40061014 40061244 + 2 NA Intergenic L1M4|LINE|L1 -4898 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 378-440 chr8 113805280 113805556 + 2 NA Intergenic L1MB1|LINE|L1 -368479 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 126 chr1 61088518 61088590 + 2 NA exon (NM_001145511, exon 2 of 11) exon (NM_001145511, exon 2 of 11) 5993 NM_001134673 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 154-21 chr12 19330108 19330257 + 2 NA intron (NM_001256787, intron 14 of 25) intron (NM_001256787, intron 14 of 25) -109310 NM_001363736 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 271-380 chr6 64861842 64862089 + 2 NA intron (NM_001292009, intron 19 of 43) L1MC2|LINE|L1 -439453 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 454-332 chr9 36988981 36989413 + 2 NA intron (NM_001280554, intron 4 of 8) intron (NM_001280554, intron 4 of 8) 45071 NR_104000 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 320-75 chr11 10984244 10984435 + 2 NA Intergenic Intergenic 126122 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 217-31 chr10 24058723 24058886 + 2 NA intron (NM_001098500, intron 2 of 18) L1MB1|LINE|L1 -149987 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 273-449 chr8 79358571 79358787 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger 26491 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 396-213 chr3 44244951 44245281 + 2 NA exon (NM_001145030, exon 2 of 20) exon (NM_001145030, exon 2 of 20) 3230 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 455-137 chr2 200153199 200153573 + 2 NA Intergenic Intergenic -152493 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 310-512 chr8 56435010 56435294 + 2 NA Intergenic Intergenic -10655 NR_125813 101929415 Hs.701520 NR_125813 ENSG00000254254 LOC101929415 - uncharacterized LOC101929415 ncRNA 328-23 chr1 172655364 172655528 + 2 NA Intergenic Intergenic -3562 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 314-354 chr22 33233148 33233388 + 2 NA Intergenic Intergenic 124739 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 325-29 chr1 179467916 179468144 + 2 NA intron (NM_144696, intron 16 of 25) intron (NM_144696, intron 16 of 25) 101986 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 324-270 chr2 106222267 106222475 + 2 NA Intergenic Intergenic -28032 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 354-239 chr2 170144237 170144531 + 2 NA Intergenic Intergenic -33763 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 249-76 chr11 48383098 48383318 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -16720 NM_001348223 79346 NM_001348223 ENSG00000176540 OR4C5 OR4C5P|OR4C5Q olfactory receptor family 4 subfamily C member 5 (gene/pseudogene) protein-coding 335-475 chr6 132428214 132428466 + 2 NA Intergenic L2a|LINE|L2 -26865 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 331-38 chr1 231480369 231480646 + 2 NA Intergenic Intergenic -3982 NR_033826 645339 Hs.382049 NR_033826 SNRPD2P2 - small nuclear ribonucleoprotein D2 pseudogene 2 pseudo 527-63 chr12 66225493 66225886 + 2 NA intron (NM_007199, intron 6 of 11) intron (NM_007199, intron 6 of 11) -25393 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 254-82 chr12 43706349 43706553 + 2 NA Intergenic L1M1|LINE|L1 52339 NM_031292 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 371-100 chr13 110083832 110084087 + 2 NA Intergenic L1MA4|LINE|L1 30674 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 524-152 chr3 69916263 69916614 + 2 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) -20154 NM_001184968 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 431-63 chr12 25668689 25669064 + 2 NA Intergenic Intergenic -20298 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 282-492 chr9 96130576 96130838 + 2 NA Intergenic Intergenic -14296 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 462-134 chr2 39587711 39588091 + 2 NA intron (NR_037875, intron 5 of 5) intron (NR_037875, intron 5 of 5) -77597 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 214-49 chr10 99730148 99730313 + 2 NA intron (NM_004376, intron 1 of 8) Tigger3c|DNA|TcMar-Tigger -2004 NM_015960 51076 Hs.16606 NM_015960 ENSG00000119929 CUTC CGI-32 cutC copper transporter protein-coding 373-365 chr6 111885349 111885602 + 2 NA Intergenic L2a|LINE|L2 -12023 NM_002037 2534 Hs.390567 NM_002037 ENSG00000010810 FYN SLK|SYN|p59-FYN FYN proto-oncogene, Src family tyrosine kinase protein-coding 226-278 chr5 42442535 42442731 + 2 NA intron (NM_001242401, intron 1 of 10) MER5B|DNA|hAT-Charlie 17652 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 340-580 chrX 44136835 44137038 + 2 NA Intergenic L1MEc|LINE|L1 -163546 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 790-21 chr2 7938892 7939525 + 2 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) 37606 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 136-71 chr5 85735274 85735347 + 2 NA Intergenic Intergenic -547134 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 375-451 chr9 82304232 82304429 + 2 NA Intergenic Intergenic 315558 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 229-53 chr11 11792676 11792872 + 2 NA Intergenic Intergenic -9552 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 247-219 chr2 151677049 151677287 + 2 NA intron (NM_001271208, intron 34 of 182) intron (NM_001271208, intron 34 of 182) 57308 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 327-243 chr2 22857457 22857662 + 2 NA Intergenic Intergenic 321080 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 321-493 chr6 55082496 55082700 + 2 NA Intergenic Intergenic -23862 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 248-231 chr22 22869148 22869351 + 2 NA Intergenic Intergenic -17018 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 320-565 chr8 116281615 116281830 + 2 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 43337 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 327-173 chr15 69652330 69652580 + 2 NA intron (NR_126437, intron 3 of 5) intron (NR_126437, intron 3 of 5) 60255 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 258-226 chr20 11486178 11486359 + 2 NA Intergenic Intergenic -212885 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 243-78 chr11 109013185 109013390 + 2 NA Intergenic Intergenic 348218 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 113-45 chr6 139094108 139094187 + 2 NA Intergenic MER6B|DNA|TcMar-Tigger -40933 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 611-3 chr1 85621404 85621777 + 2 NA Intergenic L1MEd|LINE|L1 40829 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 162-91 chr3 178991987 178992120 + 2 NA Intergenic Intergenic 79756 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 430-243 chr5 46392201 46392626 + 2 NA Intergenic ALR/Alpha|Satellite|centr -696033 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 422-26 chr10 17803989 17804249 + 2 NA Intergenic L1MB4|LINE|L1 -5229 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 313-120 chr13 48767641 48767911 + 2 NA Intergenic MER57A1|LTR|ERV1 113847 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 496-191 chr4 41630776 41631097 + 2 NA intron (NM_001330672, intron 9 of 31) MER2B|DNA|TcMar-Tigger 18034 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 323-73 chr10 129489408 129489576 + 2 NA intron (NM_002412, intron 1 of 4) L1ME3Cz|LINE|L1 22251 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 463-294 chr8 132243542 132243865 + 2 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR -138438 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 271-429 chr8 52232462 52232647 + 2 NA intron (NM_001352881, intron 2 of 2) intron (NM_001352881, intron 2 of 2) 16090 NR_148196 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 275-238 chr3 2772514 2772733 + 2 NA intron (NM_175607, intron 6 of 24) MER94|DNA|hAT-Blackjack -119592 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 301-326 chr4 93909067 93909276 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger 80418 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 341-148 chr14 66329348 66329564 + 2 NA Intergenic Intergenic -156915 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 348-7 chr1 65104585 65104824 + 2 NA Intergenic FLAM_A|SINE|Alu -36958 NM_001321854 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 480-293 chr8 83867931 83868276 + 2 NA Intergenic Intergenic -314684 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 273-336 chr4 125211769 125211957 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -104549 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 241-240 chr3 94695100 94695261 + 2 NA Intergenic LTR16A2|LTR|ERVL -243083 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 266-403 chr7 143244324 143244463 + 2 NA intron (NM_001130026, intron 8 of 10) intron (NM_001130026, intron 8 of 10) -19036 NM_001143680 373156 Hs.390667 NM_015917 ENSG00000197448 GSTK1 GST|GST 13-13|GST13|GST13-13|GSTK1-1|hGSTK1 glutathione S-transferase kappa 1 protein-coding 239-273 chr4 35789551 35789706 + 2 NA Intergenic L1M5|LINE|L1 454311 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 525-152 chr22 39892577 39892963 + 2 NA intron (NM_152512, intron 1 of 6) intron (NM_152512, intron 1 of 6) 990 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 334-296 chr2 198204459 198204734 + 2 NA Intergenic Intergenic 170501 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 228-16 chr1 118430627 118430790 + 2 NA Intergenic Intergenic -245480 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 272-57 chr10 82912500 82912676 + 2 NA intron (NR_163253, intron 6 of 10) L1MCa|LINE|L1 -679668 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 206-190 chr4 154190988 154191174 + 2 NA Intergenic Intergenic 300718 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 121-7 chr12 105240294 105240383 + 2 NA Intergenic L2-3_Crp|LINE|L2 -4108 NM_001251904 55198 Hs.506603 NM_018171 ENSG00000136044 APPL2 DIP13B adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 protein-coding 228-301 chr6 141529163 141529317 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 559559 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 344-190 chr17 72175997 72176249 + 2 NA Intergenic Intergenic 55103 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 280-432 chr8 140265916 140266138 + 2 NA intron (NM_001160372, intron 15 of 22) intron (NM_001160372, intron 15 of 22) -165492 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 310-179 chr16 86019988 86020201 + 2 NA Intergenic Intergenic 101747 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 313-221 chr19 29993573 29993802 + 2 NA intron (NM_001252641, intron 4 of 10) L1ME4b|LINE|L1 51448 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 296-494 chr9 30196496 30196725 + 2 NA Intergenic Intergenic 211844 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 394-312 chr7 93032798 93033153 + 2 NA Intergenic L1PREC2|LINE|L1 85004 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 694-2 chr1 95739193 95739786 + 2 NA Intergenic L1PB1|LINE|L1 229373 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 310-66 chr10 124179155 124179443 + 2 NA Intergenic Intergenic -85701 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 332-309 chr22 26791774 26791966 + 2 NA Intergenic Intergenic -68341 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 250-342 chr5 60568085 60568250 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -71881 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 182-68 chr17 41170577 41170708 + 2 NA Intergenic Intergenic -2421 NM_033187 85290 Hs.307023 NM_033187 ENSG00000196156 KRTAP4-3 KAP4.3 keratin associated protein 4-3 protein-coding 288-113 chr14 44101562 44101777 + 2 NA Intergenic Intergenic 405614 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 221-48 chr11 19110800 19111013 + 2 NA Intergenic MIR|SINE|MIR -6239 NM_001001483 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 251-186 chr2 145555690 145555934 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie 887845 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 255-206 chr2 128701941 128702130 + 2 NA Intergenic L1M4b|LINE|L1 -162565 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 259-242 chr3 3777686 3777857 + 2 NA non-coding (NR_149025, exon 5 of 6) non-coding (NR_149025, exon 5 of 6) -21660 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 576-120 chr4 69995667 69996103 + 2 NA promoter-TSS (NM_003154) promoter-TSS (NM_003154) -81 NM_003154 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 246-81 chr11 121721965 121722192 + 2 NA Intergenic Intergenic 269764 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 369-319 chr5 30468543 30468847 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 588135 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 253-102 chr12 43565091 43565300 + 2 NA Intergenic L1M7|LINE|L1 -12992 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 217-137 chr16 20230425 20230585 + 2 NA Intergenic MIR|SINE|MIR 97008 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 146-31 chr15 56359807 56359917 + 2 NA Intergenic L1MC|LINE|L1 -5562 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 261-370 chr8 46488133 46488315 + 2 NA Intergenic HERVK3-int|LTR|ERVK 129419 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 177-139 chr6 95532452 95532567 + 2 NA Intergenic L2c|LINE|L2 44942 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 217-333 chr6 138677791 138678001 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -13772 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 372-400 chr5 62905781 62906013 + 2 NA Intergenic Charlie19a|DNA|hAT-Charlie 327078 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 365-206 chr2 136467508 136467768 + 2 NA Intergenic Intergenic -297907 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 331-308 chr2 236147089 236147344 + 2 NA Intergenic L1MC5a|LINE|L1 21170 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 306-431 chr6 55537115 55537390 + 2 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 41962 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 329-238 chr18 51937693 51937975 + 2 NA Intergenic Intergenic -402363 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 295-144 chr15 24665351 24665580 + 2 NA Intergenic L1MA7|LINE|L1 -9929 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 317-533 chr9 98567943 98568235 + 2 NA intron (NM_005458, intron 2 of 18) intron (NM_005458, intron 2 of 18) 140846 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 290-298 chr3 178601418 178601635 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 42676 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 218-112 chr16 9783663 9783827 + 2 NA intron (NM_001134408, intron 11 of 13) intron (NM_001134408, intron 11 of 13) -328240 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 365-161 chr18 4667607 4667790 + 2 NA Intergenic L1PA15|LINE|L1 -212391 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 381-226 chr20 15076025 15076335 + 2 NA intron (NM_001351663, intron 5 of 17) L1ME4a|LINE|L1 -120660 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 243-268 chr22 40474178 40474345 + 2 NA intron (NM_020831, intron 3 of 14) L2b|LINE|L2 -10821 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 161-77 chr4 97602665 97602792 + 2 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 235802 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 148-75 chr5 157771972 157772114 + 2 NA Intergenic Intergenic 28331 NM_173491 134353 Hs.23648 NM_173491 ENSG00000155858 LSM11 - LSM11, U7 small nuclear RNA associated protein-coding 473-60 chr12 55028119 55028430 + 2 NA 3' UTR (NM_021191, exon 2 of 2) 3' UTR (NM_021191, exon 2 of 2) 8300 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 423-35 chr10 104371247 104371514 + 2 NA intron (NM_001008723, intron 7 of 17) intron (NM_001008723, intron 7 of 17) 17547 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 316-152 chr13 35270186 35270473 + 2 NA intron (NM_015678, intron 34 of 57) intron (NM_015678, intron 34 of 57) 206360 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 941-16 chr2 189385296 189386041 + 2 NA Intergenic L1PA16|LINE|L1 -55765 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 148-4 chr1 38982672 38982763 + 2 NA Intergenic L1M5|LINE|L1 -8527 NM_001136275 79647 Hs.293563 NM_024595 ENSG00000174574 AKIRIN1 C1orf108|STRF2 akirin 1 protein-coding 336-6 chr1 33565942 33566148 + 2 NA intron (NM_001281956, intron 53 of 70) L1MC4|LINE|L1 93400 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 322-142 chr13 50050587 50050845 + 2 NA intron (NR_152566, intron 5 of 13) AluJr|SINE|Alu -1515 NR_029485 406948 NR_029485 ENSG00000283785 MIR15A MIRN15A|hsa-mir-15a|miRNA15A|mir-15a microRNA 15a ncRNA 439-158 chr2 238662137 238662513 + 2 NA Intergenic AluJr|SINE|Alu -106826 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 565-157 chr6 63929167 63929656 + 2 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 122575 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 285-323 chr5 10898894 10899082 + 2 NA Intergenic Intergenic -137754 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 340-458 chr5 103710649 103710908 + 2 NA Intergenic HAL1|LINE|L1 -147989 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 238-219 chr21 42464726 42464907 + 2 NA Intergenic AluJo|SINE|Alu 31408 NM_001286506 89765 Hs.661069 NM_080860 ENSG00000160188 RSPH1 CT79|RSP44|RSPH10A|TSA2|TSGA2 radial spoke head component 1 protein-coding 282-470 chr8 130582480 130582708 + 2 NA Intergenic Intergenic -138920 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 443-61 chr12 4643802 4644219 + 2 NA intron (NM_001278309, intron 2 of 5) intron (NM_001278309, intron 2 of 5) 5037 NM_006422 10566 Hs.98397 NM_006422 ENSG00000111254 AKAP3 AKAP 110|AKAP110|CT82|FSP95|HEL159|PRKA3|SOB1 A-kinase anchoring protein 3 protein-coding 198-205 chr5 164710003 164710136 + 2 NA Intergenic Intergenic 239790 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 332-268 chr2 136289461 136289705 + 2 NA Intergenic Intergenic -171428 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 304-411 chr5 37838665 37838954 + 2 NA intron (NM_000514, intron 1 of 2) CpG -1075 NR_145476 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 266-179 chr2 75758319 75758530 + 2 NA Intergenic L1P4|LINE|L1 -47509 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 274-44 chr10 57569104 57569275 + 2 NA Intergenic L1M4|LINE|L1 -264630 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 328-284 chr2 147572976 147573175 + 2 NA Intergenic L2c|LINE|L2 -271442 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 257-154 chr18 8605538 8605762 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -3795 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 383-344 chr6 130953006 130953256 + 2 NA intron (NR_146620, intron 1 of 12) MIR3|SINE|MIR 17352 NM_001350310 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 552-131 chr3 7908389 7908772 + 2 NA Intergenic Intergenic 107727 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 305-10 chr1 66572478 66572759 + 2 NA intron (NM_001350218, intron 1 of 22) intron (NM_001350218, intron 1 of 22) 38465 NM_032291 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 364-68 chr10 76798957 76799309 + 2 NA Intergenic L1ME3|LINE|L1 -88911 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 636-9 chr1 181285635 181286103 + 2 NA Intergenic L1MA1|LINE|L1 49481 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 281-38 chr10 32390036 32390223 + 2 NA Intergenic Intergenic -11360 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 360-92 chr12 59240240 59240540 + 2 NA Intergenic Intergenic -319852 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 302-444 chr8 66893210 66893414 + 2 NA intron (NM_001136160, intron 10 of 13) AluJr|SINE|Alu 21810 NM_001136160 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 321-359 chr3 5271163 5271403 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -21028 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 203-62 chr14 59507088 59507221 + 2 NA intron (NM_001164399, intron 19 of 19) intron (NM_001164399, intron 19 of 19) 22637 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 230-46 chr10 90335626 90335802 + 2 NA Intergenic Intergenic 205091 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 374-401 chr8 132021858 132022227 + 2 NA Intergenic LTR40a|LTR|ERVL 37340 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 201-9 chr1 99679369 99679560 + 2 NA intron (NM_017734, intron 3 of 7) intron (NM_017734, intron 3 of 7) 33351 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 272-395 chr6 121583825 121584064 + 2 NA Intergenic Intergenic 148298 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 201-5 chr1 75460694 75460863 + 2 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 150336 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 171-3 chr1 34244197 34244322 + 2 NA Intergenic L1ME3D|LINE|L1 67352 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 301-263 chr21 31038746 31038957 + 2 NA promoter-TSS (NM_001099219) promoter-TSS (NM_001099219) -375 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 414-137 chr19 28889122 28889447 + 2 NA Intergenic Intergenic -75847 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 386-49 chr11 31847979 31848318 + 2 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) 21581 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 668-20 chr12 50865321 50865860 + 2 NA intron (NM_182559, intron 3 of 4) L1ME1|LINE|L1 22664 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 333-175 chr16 31606573 31606860 + 2 NA Intergenic L1P4|LINE|L1 -37192 NR_027011 440359 Hs.650902 NR_027011 YBX3P1 CSDAP1 Y-box binding protein 3 pseudogene 1 pseudo 286-176 chr18 76324767 76324984 + 2 NA Intergenic Intergenic 115365 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 303-417 chr7 20363056 20363338 + 2 NA intron (NM_002214, intron 1 of 13) intron (NM_002214, intron 1 of 13) -31435 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 442-205 chr4 30352569 30352902 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -367634 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 227-398 chr9 82589188 82589400 + 2 NA Intergenic MER131|DNA?|DNA? 473848 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 460-37 chr10 72879729 72880126 + 2 NA intron (NM_138357, intron 6 of 7) AluSz6|SINE|Alu -13812 NR_130125 170392 Hs.8366 NM_152635 ENSG00000138315 OIT3 LZP oncoprotein induced transcript 3 protein-coding 263-409 chr8 21566399 21566563 + 2 NA Intergenic Intergenic 222394 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 246-390 chr8 48935241 48935427 + 2 NA Intergenic Intergenic -13905 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 349-54 chr10 39065747 39065973 + 2 NA Intergenic ALR/Alpha|Satellite|centr 369264 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 1071-6 chr16 26674626 26675498 + 2 NA Intergenic L3|LINE|CR1 -391865 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 680-112 chr7 51434576 51435074 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -41569 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 616-134 chr5 62817236 62817695 + 2 NA Intergenic L1PA2|LINE|L1 238646 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 125-10 chr12 7588943 7589040 + 2 NA Intergenic HERVP71A-int|LTR|ERV1 76917 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 171-10 chr1 113160095 113160187 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 46112 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 169-12 chr10 56242147 56242298 + 2 NA Intergenic Intergenic 119037 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 429-65 chr12 22833359 22833737 + 2 NA Intergenic Intergenic 208377 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 209-153 chr2 77592459 77592592 + 2 NA Intergenic Intergenic -70092 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 352-547 chr8 137381405 137381707 + 2 NA Intergenic Intergenic 32032 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 496-53 chr12 13411330 13411665 + 2 NA Intergenic L1MA4|LINE|L1 -34752 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 272-323 chr4 186678254 186678501 + 2 NA intron (NM_005245, intron 2 of 26) FLAM_C|SINE|Alu 45479 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 277-50 chr10 43953314 43953532 + 2 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 41021 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 416-34 chr10 34891374 34891658 + 2 NA Intergenic Intergenic 75748 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 459-119 chr18 57657180 57657530 + 2 NA intron (NM_005603, intron 22 of 27) intron (NM_005603, intron 22 of 27) 27024 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 409-223 chr4 98197518 98197799 + 2 NA Intergenic Intergenic -54182 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 757-40 chr3 104606990 104607601 + 2 NA Intergenic L2a|LINE|L2 -759418 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 461-137 chr2 105915344 105915645 + 2 NA Intergenic Intergenic 63647 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 244-147 chr2 3161649 3161864 + 2 NA Intergenic AluJb|SINE|Alu -35730 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 359-48 chr10 28805391 28805720 + 2 NA intron (NR_120652, intron 2 of 3) L1MA1|LINE|L1 -9505 NR_038376 100507605 Hs.119207 NR_038374 ENSG00000235824 LINC00837 - long intergenic non-protein coding RNA 837 ncRNA 380-247 chr3 87924320 87924550 + 2 NA intron (NM_001322210, intron 2 of 2) L1MA5|LINE|L1 -58141 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 310-279 chr2 216772550 216772816 + 2 NA Intergenic MIR|SINE|MIR -77134 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 564-13 chr10 43239995 43240395 + 2 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -10456 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 338-542 chr8 87751073 87751252 + 2 NA Intergenic MER72|LTR|ERV1 122853 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 485-94 chr16 58359652 58360030 + 2 NA Intergenic L1M1|LINE|L1 -32630 NM_022770 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 255-396 chr7 96864585 96864796 + 2 NA Intergenic Intergenic -140863 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 175-173 chr8 117653224 117653368 + 2 NA Intergenic MER117|DNA|hAT-Charlie 132583 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 370-395 chr6 67180746 67181095 + 2 NA Intergenic MamGypLTR2b|LTR|Gypsy -874431 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 355-230 chr2 21018864 21019148 + 2 NA exon (NM_000384, exon 20 of 29) exon (NM_000384, exon 20 of 29) 25067 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 320-504 chr7 18250275 18250515 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -39697 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 528-51 chr11 54806129 54806605 + 2 NA Intergenic ALR/Alpha|Satellite|centr 99535 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 230-285 chr5 13605045 13605192 + 2 NA Intergenic MIRb|SINE|MIR 339362 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 287-306 chr5 25877210 25877427 + 2 NA Intergenic Intergenic 686365 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 437-64 chr13 89807474 89807775 + 2 NA Intergenic Intergenic -243211 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 257-172 chr2 4334470 4334675 + 2 NA Intergenic Intergenic 321650 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 342-237 chr2 71231058 71231322 + 2 NA Intergenic L1MB3|LINE|L1 -4087 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 349-45 chr10 8204958 8205185 + 2 NA Intergenic Intergenic 63234 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 471-205 chr5 42134054 42134493 + 2 NA Intergenic L1M2|LINE|L1 41072 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 319-301 chr21 24348564 24348727 + 2 NA Intergenic MER57B1|LTR|ERV1 -27268 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 205-57 chr11 97536081 97536212 + 2 NA Intergenic L1ME2|LINE|L1 1027721 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 246-229 chr20 15561299 15561529 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 361900 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 334-517 chr8 26073939 26074169 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie -28641 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 200-163 chr21 44609706 44609844 + 2 NA intron (NM_144991, intron 1 of 11) HAL1|LINE|L1 -2304 NM_198695 386681 Hs.528021 NM_198695 ENSG00000187766 KRTAP10-8 KAP10.8|KRTAP18-8|KRTAP18.8 keratin associated protein 10-8 protein-coding 329-458 chr5 64661266 64661475 + 2 NA Intergenic L2-1_AMi|LINE|L2 -29133 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 498 chr1 13877156 13877609 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 127967 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 325-308 chr20 40403429 40403602 + 2 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 285721 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 318-356 chr3 73986111 73986332 + 2 NA Intergenic Intergenic 176977 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 835-24 chr19 27348510 27349149 + 2 NA Intergenic ALR/Alpha|Satellite|centr -444602 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 260-418 chr7 119206383 119206534 + 2 NA Intergenic Intergenic 700917 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 125-47 chr4 84351237 84351306 + 2 NA Intergenic Intergenic -52102 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 560-104 chr21 23381914 23382456 + 2 NA intron (NR_040254, intron 1 of 4) L1M4|LINE|L1 2650 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 474-101 chr16 59282934 59283222 + 2 NA Intergenic L1MA4A|LINE|L1 472113 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 218-226 chr3 134858484 134858692 + 2 NA intron (NM_004441, intron 1 of 15) intron (NM_004441, intron 1 of 15) 63328 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 376-229 chr21 24066568 24066807 + 2 NA Intergenic Intergenic 254690 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 300-286 chr3 104998789 104998940 + 2 NA Intergenic L1PA17|LINE|L1 -367849 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 198-251 chr8 126326514 126326668 + 2 NA intron (NR_125421, intron 1 of 2) intron (NR_125421, intron 1 of 2) 1096 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 262-351 chr5 142866317 142866574 + 2 NA intron (NR_046680, intron 3 of 5) MIRb|SINE|MIR 2465 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 788-53 chr8 116267091 116267561 + 2 NA intron (NR_046215, intron 2 of 13) L1PA15|LINE|L1 57733 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 307-8 chr1 74893371 74893626 + 2 NA Intergenic L1P4a|LINE|L1 -160090 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 444-137 chr20 16773723 16774044 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 25530 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 179-111 chr7 80601513 80601651 + 2 NA promoter-TSS (NM_001001547) promoter-TSS (NM_001001547) -625 NM_001001547 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 298-318 chr4 33001852 33002077 + 2 NA Intergenic Intergenic 650926 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 351-446 chr7 45529956 45530163 + 2 NA Intergenic L1MD1|LINE|L1 -44081 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 214-251 chr4 167976099 167976269 + 2 NA Intergenic L1PA13|LINE|L1 -116353 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 311-312 chr20 60449887 60450181 + 2 NA Intergenic MER67D|LTR|ERV1 22942 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 272-406 chr6 156003560 156003810 + 2 NA Intergenic L1MA9|LINE|L1 56888 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 743-71 chr6 1567915 1568552 + 2 NA Intergenic L1M4b|LINE|L1 -37298 NR_125804 101927703 Hs.607964 NR_125804 FOXCUT LINC01379|TCONS_00011636 FOXC1 upstream transcript ncRNA 309-369 chr3 165835603 165835894 + 2 NA intron (NM_000055, intron 1 of 3) intron (NM_000055, intron 1 of 3) 1675 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 240-440 chr9 102786573 102786725 + 2 NA Intergenic L1MA8|LINE|L1 -208684 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 323-527 chr8 17488086 17488384 + 2 NA Intergenic Intergenic -8853 NM_001008539 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 344-421 chr6 50861209 50861538 + 2 NA Intergenic Intergenic 42502 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 405-148 chr2 108092289 108092681 + 2 NA Intergenic L1MA1|LINE|L1 -39730 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 429-229 chr5 27132670 27133076 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -94287 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 270-166 chr18 75356310 75356513 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 71292 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 538-8 chr1 90688771 90689258 + 2 NA Intergenic MER81|DNA|hAT-Blackjack 28288 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 278-142 chr16 5699247 5699460 + 2 NA Intergenic L1ME3C|LINE|L1 66886 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 216-66 chr11 108103582 108103724 + 2 NA intron (NM_003478, intron 18 of 18) intron (NM_003478, intron 18 of 18) -17914 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 412-338 chr9 1404357 1404582 + 2 NA Intergenic Intergenic 352982 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 356-308 chr22 49423767 49424110 + 2 NA intron (NR_110522, intron 1 of 2) intron (NR_110522, intron 1 of 2) 119528 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 229-167 chr19 36437417 36437567 + 2 NA Intergenic MER65B|LTR|ERV1 16318 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 282-324 chr4 30883334 30883565 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 163080 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 354-496 chr9 89746889 89747115 + 2 NA Intergenic MLT2B1|LTR|ERVL 107219 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 288-470 chr9 82934181 82934341 + 2 NA Intergenic L1PA5|LINE|L1 128881 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 312-360 chr4 23044681 23044888 + 2 NA Intergenic Intergenic 330695 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 402-289 chr5 154552570 154552923 + 2 NA Intergenic L1MC1|LINE|L1 43326 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 207-225 chr4 107783163 107783310 + 2 NA Intergenic Intergenic -41329 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 307-82 chr11 32659470 32659659 + 2 NA intron (NM_001008391, intron 9 of 17) intron (NM_001008391, intron 9 of 17) 75733 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 576-136 chr5 58018476 58018957 + 2 NA Intergenic Intergenic 103625 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 325-241 chr18 61401473 61401645 + 2 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 68129 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 188-51 chr14 41178817 41178940 + 2 NA Intergenic Intergenic 224167 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 353-291 chr20 56314381 56314666 + 2 NA Intergenic L1MB8|LINE|L1 -44451 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 543-150 chr20 39667341 39667722 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -336930 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 347-424 chr5 167206943 167207184 + 2 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) -38662 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 328-342 chr3 36192702 36192935 + 2 NA Intergenic Intergenic -187669 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 508-13 chr1 153014399 153014752 + 2 NA Intergenic L1MB3|LINE|L1 12826 NM_001097589 6707 Hs.139322 NM_005416 ENSG00000163209 SPRR3 - small proline rich protein 3 protein-coding 633-51 chr17 70065111 70065639 + 2 NA intron (NR_104129, intron 2 of 2) intron (NR_104129, intron 2 of 2) -9850 NM_001291622 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 368-105 chr12 57902258 57902459 + 2 NA Intergenic L1ME3C|LINE|L1 -5876 NR_148947 283387 Hs.727244 NR_148947 ENSG00000245651 LOC283387 - uncharacterized LOC283387 ncRNA 311-505 chr8 83960269 83960436 + 2 NA Intergenic AluJr|SINE|Alu -222435 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 369-335 chr5 111312011 111312275 + 2 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 87759 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 322-193 chr16 77148593 77148873 + 2 NA Intergenic Intergenic -42457 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 364-281 chr3 99102401 99102705 + 2 NA Intergenic Intergenic -200858 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 368-249 chr2 161202569 161202893 + 2 NA intron (NM_001199135, intron 2 of 7) intron (NM_001199135, intron 2 of 7) -42008 NR_110163 100996579 Hs.660929 NR_110163 ENSG00000227403 LINC01806 - long intergenic non-protein coding RNA 1806 ncRNA 271-135 chr14 58407550 58407808 + 2 NA TTS (NR_130752) TTS (NR_130752) 11749 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 356-2 chr1 14040913 14041104 + 2 NA Intergenic HAL1|LINE|L1 291593 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 576-57 chr15 60215747 60216257 + 2 NA Intergenic MIRb|SINE|MIR 181984 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 704-47 chr20 15550496 15551025 + 2 NA intron (NM_001351663, intron 8 of 17) MIRb|SINE|MIR 353920 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 326-50 chr1 228887837 228888019 + 2 NA Intergenic L1MC5a|LINE|L1 152449 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 114-48 chr5 19054280 19054356 + 2 NA Intergenic Intergenic 831954 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 239-66 chr11 116004343 116004514 + 2 NA Intergenic L1ME3Cz|LINE|L1 -244228 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 323-333 chr3 95317174 95317480 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 365866 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 202-260 chr8 126688252 126688401 + 2 NA Intergenic L1ME3C|LINE|L1 -129848 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 268-385 chr8 10321937 10322141 + 2 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -152526 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 509-89 chr17 5996418 5996730 + 2 NA Intergenic L1ME1|LINE|L1 -74040 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 369-284 chr4 32530463 32530660 + 2 NA Intergenic L1MA1|LINE|L1 179523 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 260-185 chr18 63722945 63723131 + 2 NA exon (NM_080475, exon 9 of 9) exon (NM_080475, exon 9 of 9) 20078 NM_001370475 89778 Hs.350958 NM_080475 ENSG00000206072 SERPINB11 EPIPIN|SERPIN11 serpin family B member 11 (gene/pseudogene) protein-coding 479-39 chr12 38910252 38910601 + 2 NA Intergenic L1PA16|LINE|L1 -4835 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 320-233 chr19 15938777 15939086 + 2 NA Intergenic Intergenic -4065 NM_001128932 57834 Hs.187393 NM_021187 ENSG00000171903 CYP4F11 CYPIVF11 cytochrome P450 family 4 subfamily F member 11 protein-coding 259-355 chr6 135614666 135614854 + 2 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 116959 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 564-118 chr22 27449486 27449857 + 2 NA Intergenic MER94|DNA|hAT-Blackjack 139020 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 316-369 chr3 161130665 161130861 + 2 NA Intergenic L1MC5a|LINE|L1 -25391 NM_001349159 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 1188-12 chr9 35335907 35336748 + 2 NA intron (NM_006377, intron 10 of 38) intron (NM_006377, intron 10 of 38) -5569 NM_001371188 440-104 chr19 8674592 8674874 + 2 NA Intergenic Intergenic 24062 NM_178525 284382 Hs.209206 NM_178525 ENSG00000181786 ACTL9 HSD21 actin like 9 protein-coding 450-93 chr15 60846870 60847149 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 165440 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 554-212 chr9 34509740 34510111 + 2 NA intron (NM_001281428, intron 13 of 19) AluYb8|SINE|Alu 13065 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 537-9 chr1 94436401 94436875 + 2 NA intron (NM_002858, intron 1 of 22) Tigger1|DNA|TcMar-Tigger 18249 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 288-167 chr19 29108496 29108697 + 2 NA Intergenic Intergenic 104555 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 334-510 chr7 132745334 132745586 + 2 NA Intergenic L1MEd|LINE|L1 -13510 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 446-304 chr8 79369419 79369839 + 2 NA Intergenic L1M2|LINE|L1 37441 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 443-255 chr5 153053409 153053823 + 2 NA Intergenic Intergenic -81267 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 456-200 chr3 81059207 81059538 + 2 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 65504 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 370-264 chr2 240344216 240344423 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger -91344 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 254-309 chr5 55228318 55228499 + 2 NA Intergenic Intergenic -1093 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 291-280 chr3 12578506 12578738 + 2 NA intron (NM_001271707, intron 5 of 6) L1MEb|LINE|L1 21535 NM_014160 23609 Hs.591666 NM_014160 ENSG00000075975 MKRN2 HSPC070|RNF62 makorin ring finger protein 2 protein-coding 490-294 chr8 98611515 98611807 + 2 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 184703 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 640-10 chr10 30086442 30086882 + 2 NA intron (NM_001350022, intron 1 of 4) intron (NM_001350022, intron 1 of 4) -27076 NM_001350001 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 259-427 chr9 9266671 9266826 + 2 NA intron (NM_002839, intron 9 of 45) L1MA9|LINE|L1 408730 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 127-53 chr2 189057564 189057686 + 2 NA intron (NM_000393, intron 33 of 53) intron (NM_000393, intron 33 of 53) 61995 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 220-45 chr10 53394409 53394550 + 2 NA Intergenic Intergenic -622779 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 304-379 chr4 62417108 62417370 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -255474 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 376-29 chr1 227861708 227862045 + 2 NA Intergenic L1M4|LINE|L1 46159 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 235-265 chr4 106281320 106281500 + 2 NA intron (NM_001290768, intron 3 of 26) L1MA3|LINE|L1 -34200 NM_001142415 9255 Hs.591680 NM_004757 ENSG00000164022 AIMP1 EMAP2|EMAPII|HLD3|SCYE1|p43 aminoacyl tRNA synthetase complex interacting multifunctional protein 1 protein-coding 355-465 chr7 61740913 61741224 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1562988 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 282-160 chr17 16648434 16648645 + 2 NA intron (NM_020787, intron 2 of 5) intron (NM_020787, intron 2 of 5) 5311 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 226-43 chr10 56914666 56914853 + 2 NA Intergenic L1PB1|LINE|L1 389800 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 505-216 chr4 54188840 54189294 + 2 NA Intergenic Intergenic -40226 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 224-188 chr22 49124600 49124755 + 2 NA Intergenic LTR48B|LTR|ERV1 257907 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 499-169 chr3 82810543 82810903 + 2 NA Intergenic Intergenic 824581 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 345-367 chr3 178989998 178990280 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 81670 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 285-50 chr10 113423579 113423726 + 2 NA Intergenic Intergenic -127179 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 431-271 chr7 63987154 63987434 + 2 NA Intergenic L1M1|LINE|L1 -11512 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 383-315 chr5 58196857 58197201 + 2 NA Intergenic Intergenic -74688 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 608-146 chr7 55405685 55406185 + 2 NA intron (NM_018697, intron 5 of 8) intron (NM_018697, intron 5 of 8) 40487 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 290-299 chr3 186286618 186286817 + 2 NA intron (NM_001346, intron 6 of 24) L1MC5|LINE|L1 75517 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 177-157 chr8 72014582 72014734 + 2 NA intron (NR_033652, intron 4 of 4) intron (NR_033652, intron 4 of 4) 60926 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 335-82 chr11 15393237 15393450 + 2 NA Intergenic Intergenic 244241 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 233-212 chr21 30399217 30399395 + 2 NA Intergenic L1MEg|LINE|L1 3275 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 297-68 chr11 26539323 26539498 + 2 NA intron (NM_031418, intron 10 of 26) intron (NM_031418, intron 10 of 26) 32853 NM_145650 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 427-118 chr2 80624044 80624431 + 2 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 310858 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 412-37 chr10 91095621 91096018 + 2 NA Intergenic Intergenic 50011 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 334-205 chr17 16624362 16624544 + 2 NA exon (NM_020787, exon 6 of 6) exon (NM_020787, exon 6 of 6) 29397 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 399-343 chrX 147303479 147303730 + 2 NA Intergenic L1MD|LINE|L1 -18876 NR_030240 574518 NR_030240 ENSG00000207867 MIR514A3 MIR514-3|MIRN514-3|hsa-mir-514a-3 microRNA 514a-3 ncRNA 323-217 chr19 36889600 36889901 + 2 NA 3' UTR (NM_001171979, exon 6 of 6) 3' UTR (NM_001171979, exon 6 of 6) 26289 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 534-258 chr8 88630221 88630682 + 2 NA Intergenic L1MCb|LINE|L1 -302968 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 420-181 chr3 34818868 34819258 + 2 NA Intergenic L1M3a|LINE|L1 574960 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 260-56 chr10 67413962 67414183 + 2 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -10662 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 284-438 chr9 31282283 31282556 + 2 NA Intergenic Intergenic 99071 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 336-19 chr1 64385517 64385690 + 2 NA Intergenic MER51D|LTR|ERV1 -84526 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 393-304 chr6 49660767 49660988 + 2 NA Intergenic L1MB3|LINE|L1 -24003 NM_000324 6005 Hs.120950 NM_000324 ENSG00000112077 RHAG CD241|OHS|OHST|RH2|RH50A|RHNR|Rh50|Rh50GP|SLC42A1 Rh associated glycoprotein protein-coding 456-255 chr5 93086577 93086984 + 2 NA Intergenic Intergenic 484563 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 352-506 chr7 89463066 89463256 + 2 NA Intergenic L1PA4|LINE|L1 -656239 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 339-618 chrUn_GL000216v2 50184 50485 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 351-297 chr3 44739436 44739769 + 2 NA Intergenic MLT2D|LTR|ERVL 9967 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 301-130 chr15 46017700 46017916 + 2 NA Intergenic LTR16B1|LTR|ERVL 312613 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 319-209 chr18 65860230 65860406 + 2 NA intron (NM_001362438, intron 10 of 11) (AAT)n|Simple_repeat|Simple_repeat 109306 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 451-204 chr6 152046160 152046570 + 2 NA intron (NM_001122741, intron 6 of 8) intron (NM_001122741, intron 6 of 8) 121922 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 207-157 chr2 222513388 222513556 + 2 NA intron (NM_152386, intron 2 of 4) L2b|LINE|L2 88929 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 295-314 chr3 178710946 178711221 + 2 NA intron (NM_001278911, intron 1 of 4) MIR|SINE|MIR 149322 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 208-271 chr8 124331958 124332156 + 2 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 40642 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 221-141 chr2 88833548 88833710 + 2 NA Intergenic Intergenic 21259 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 515-162 chr3 79989820 79990144 + 2 NA Intergenic Intergenic -221984 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 494-123 chr2 40892773 40893215 + 2 NA Intergenic L1MC1|LINE|L1 -380559 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 343-477 chr6 103688804 103689126 + 2 NA Intergenic Intergenic 1170581 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 230-195 chr2 212086234 212086428 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 340029 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 222-185 chr2 126491274 126491485 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -164556 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 323-575 chr9 32136729 32137027 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -247725 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 502-61 chr12 23027689 23028035 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -147774 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 234-303 chr5 25824192 25824356 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 633321 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 577-95 chr2 117753625 117754069 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -60844 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 289-15 chr1 111854615 111854773 + 2 NA intron (NR_046783, intron 1 of 1) intron (NR_046783, intron 1 of 1) 2211 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 377-8 chr1 63296199 63296529 + 2 NA intron (NR_038252, intron 3 of 11) intron (NR_038252, intron 3 of 11) 20893 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 210-226 chr5 67673264 67673419 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -26552 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 541-95 chr18 9765274 9765676 + 2 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 57174 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 390-274 chr4 154197346 154197710 + 2 NA Intergenic L1P4a|LINE|L1 294271 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 382-351 chr6 49224181 49224528 + 2 NA Intergenic Intergenic 238899 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 225-396 chr9 99156135 99156278 + 2 NA Intergenic L1MB7|LINE|L1 51093 NM_004612 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 345-430 chr5 108608471 108608751 + 2 NA Intergenic HAL1ME|LINE|L1 119650 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 141-4 chr1 64356167 64356286 + 2 NA Intergenic Intergenic -113903 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 307-138 chr14 51419337 51419519 + 2 NA Intergenic AluSc|SINE|Alu -22293 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 340-561 chr8 139812684 139812894 + 2 NA intron (NM_001160372, intron 21 of 22) MIRb|SINE|MIR -109666 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 322-489 chr7 46869863 46870099 + 2 NA Intergenic Intergenic -172859 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 263-444 chr9 27777004 27777201 + 2 NA Intergenic Intergenic -203236 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 236-22 chr1 173247695 173247887 + 2 NA intron (NR_037845, intron 2 of 2) L2b|LINE|L2 -40460 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 241-105 chr14 47317895 47318063 + 2 NA intron (NM_001113498, intron 1 of 16) L2c|LINE|L2 25267 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 322-450 chr6 35547873 35548122 + 2 NA Intergenic L1M7|LINE|L1 -35101 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 588-3 chr1 42254664 42255084 + 2 NA intron (NM_001198850, intron 4 of 12) L1PA3|LINE|L1 80081 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 262-181 chr18 29342457 29342642 + 2 NA Intergenic L1M1|LINE|L1 -956361 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 169-72 chr22 48871421 48871544 + 2 NA intron (NR_038944, intron 1 of 6) intron (NR_038944, intron 1 of 6) 4712 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 372-486 chr8 84236232 84236437 + 2 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 51668 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 286-459 chr8 99756646 99756888 + 2 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 136940 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 163-68 chr2 150856113 150856270 + 2 NA Intergenic LTR82A|LTR|ERVL 227294 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 481-26 chr10 44187613 44187935 + 2 NA Intergenic L1ME1|LINE|L1 -104976 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 580-174 chr7 3558164 3558578 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 257119 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 205-174 chr22 46073309 46073498 + 2 NA Intergenic Intergenic -2382 NR_148973 642648 Hs.631363 NR_148973 LOC642648 - uncharacterized LOC642648 ncRNA 366-10 chr1 78828034 78828239 + 2 NA Intergenic Intergenic 178305 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 479-234 chr7 93258979 93259357 + 2 NA intron (NM_001257998, intron 9 of 28) intron (NM_001257998, intron 9 of 28) 26802 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 252-266 chr3 85191258 85191474 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -129102 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 428-241 chr5 126704102 126704427 + 2 NA Intergenic Intergenic 72222 NR_134485 102723557 Hs.582207 NR_134485 ENSG00000251072 LMNB1-DT - LMNB1 divergent transcript ncRNA 372-222 chr2 47501907 47502227 + 2 NA Intergenic Intergenic -25470 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 262-73 chr11 28626707 28626947 + 2 NA Intergenic Intergenic -149279 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 344-484 chr8 50252235 50252512 + 2 NA intron (NR_135797, intron 2 of 20) L1MA4A|LINE|L1 88242 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 400-199 chr21 42604629 42604910 + 2 NA intron (NR_131192, intron 1 of 1) MER4B-int|LTR|ERV1 10326 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 377-392 chr8 59878856 59879107 + 2 NA Intergenic L1MA3|LINE|L1 402419 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 294-112 chr14 44558941 44559102 + 2 NA Intergenic MIR|SINE|MIR 51612 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 331-437 chr5 145182803 145183100 + 2 NA Intergenic Intergenic 652391 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 345-218 chr18 33985077 33985406 + 2 NA intron (NM_001353232, intron 6 of 9) intron (NM_001353232, intron 6 of 9) 63371 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 274-377 chr8 52533431 52533614 + 2 NA TTS (NM_207413) TTS (NM_207413) 31908 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 207-39 chr10 74808923 74809108 + 2 NA Intergenic L2c|LINE|L2 -16240 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 399-11 chr1 159749527 159749872 + 2 NA Intergenic Intergenic -31263 NM_001319658 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|LDP3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 285-202 chr2 80124533 80124700 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 180136 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 757-56 chr7 48592356 48592929 + 2 NA intron (NM_152701, intron 57 of 61) L1MA9|LINE|L1 -331905 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 566-114 chr21 20822993 20823540 + 2 NA Intergenic Intergenic -20158 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 500-102 chr16 17237819 17238164 + 2 NA intron (NM_022166, intron 3 of 11) intron (NM_022166, intron 3 of 11) 103487 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 492-53 chr12 4209528 4209893 + 2 NA Intergenic Intergenic -64052 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 264-39 chr10 36692165 36692381 + 2 NA Intergenic LTR1B|LTR|ERV1 -433584 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 215-196 chr3 87601159 87601299 + 2 NA Intergenic Intergenic -191477 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 456-115 chr15 88370450 88370799 + 2 NA Intergenic Intergenic 96764 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 228-249 chr4 94001756 94001897 + 2 NA Intergenic Intergenic 173073 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 394-96 chr13 74931340 74931666 + 2 NA Intergenic L1M4b|LINE|L1 308878 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 327-547 chrX 151545602 151545844 + 2 NA Intergenic Intergenic -17952 NM_173493 139135 Hs.160594 NM_173493 ENSG00000166049 PASD1 CT63|CT64|OXTES1 PAS domain containing repressor 1 protein-coding 229-277 chr4 83758003 83758197 + 2 NA Intergenic Intergenic 221992 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 300-136 chr15 87517082 87517296 + 2 NA Intergenic Intergenic -59740 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 188-113 chr2 234061186 234061329 + 2 NA intron (NM_006944, intron 4 of 7) L2a|LINE|L2 10555 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 251-79 chr13 63080799 63080953 + 2 NA Intergenic L1MB2|LINE|L1 247218 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 416-209 chr22 32729904 32730276 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -70726 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 333-186 chr17 43848486 43848795 + 2 NA exon (NM_001168324, exon 2 of 6) exon (NM_001168324, exon 2 of 6) 1464 NM_145273 146894 Hs.147313 NM_145273 ENSG00000161649 CD300LG CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4 CD300 molecule like family member g protein-coding 601-93 chr3 76428446 76428962 + 2 NA Intergenic Intergenic -611395 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 575-176 chr7 2987592 2987956 + 2 NA intron (NM_001324281, intron 1 of 25) AluSx3|SINE|Alu 56093 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 376-216 chr20 43150598 43150921 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 39147 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 326-498 chr7 55824668 55824891 + 2 NA intron (NM_207366, intron 6 of 9) AluSx|SINE|Alu 37973 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 296-150 chr14 102502525 102502757 + 2 NA TTS (NM_014844) TTS (NM_014844) 7135 NM_001348652 122416 Hs.432945 NM_152326 ENSG00000156381 ANKRD9 - ankyrin repeat domain 9 protein-coding 186-87 chr2 118210420 118210574 + 2 NA Intergenic L1MD1|LINE|L1 -24111 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 421-105 chr17 3431286 3431595 + 2 NA Intergenic L1MA5|LINE|L1 2401 NM_003554 8388 Hs.533931 NM_003554 ENSG00000127780 OR1E2 OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529 olfactory receptor family 1 subfamily E member 2 protein-coding 166-82 chr4 23741065 23741225 + 2 NA Intergenic L1ME3G|LINE|L1 140147 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 343-60 chr10 104949484 104949694 + 2 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -283373 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 221-115 chr18 2307313 2307524 + 2 NA Intergenic Intergenic 264087 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 323-444 chr6 3589485 3589716 + 2 NA Intergenic Intergenic -133041 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 338-268 chr2 121010018 121010253 + 2 NA Intergenic L1MB5|LINE|L1 217854 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 242-334 chr6 10845253 10845420 + 2 NA Intergenic Intergenic -6781 NM_001242385 4117 Hs.446125 NM_005906 ENSG00000111837 MAK RP62 male germ cell associated kinase protein-coding 522-96 chr16 24053799 24054237 + 2 NA intron (NM_002738, intron 5 of 16) AluJr|SINE|Alu -149098 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 354-391 chr5 174008998 174009343 + 2 NA Intergenic AluSz6|SINE|Alu 20000 NM_001144954 133491 Hs.131469 NM_001144954 ENSG00000185056 C5orf47 - chromosome 5 open reading frame 47 protein-coding 483-295 chrX 83974738 83975151 + 2 NA Intergenic Intergenic 113798 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 244-87 chr14 35544258 35544468 + 2 NA intron (NM_194301, intron 39 of 39) MIR|SINE|MIR 10199 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 346-322 chr3 114225902 114226085 + 2 NA Intergenic Intergenic 11585 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 270-128 chr15 70977979 70978152 + 2 NA intron (NM_017691, intron 9 of 15) intron (NM_017691, intron 9 of 15) 85622 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 327-510 chr8 141573764 141574060 + 2 NA Intergenic Intergenic -66682 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 373-251 chr22 36988013 36988285 + 2 NA Intergenic L2c|LINE|L2 19702 NM_178552 339669 Hs.124502 NM_178552 ENSG00000185264 TEX33 C22orf33|EAN57|cE81G9.2 testis expressed 33 protein-coding 416-317 chr7 82539029 82539408 + 2 NA Intergenic Intergenic -95262 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 230-132 chr15 96061751 96061916 + 2 NA Intergenic Intergenic 66008 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 318-511 chr7 53230987 53231164 + 2 NA Intergenic L1MC5|LINE|L1 195442 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 432-58 chr12 25711679 25712094 + 2 NA Intergenic Intergenic -63308 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 213-132 chr2 34670100 34670254 + 2 NA Intergenic L1MA3|LINE|L1 -7380 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 269-319 chr5 95383388 95383610 + 2 NA Intergenic Intergenic -7867 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 462-242 chr5 167444550 167444994 + 2 NA intron (NM_001122679, intron 3 of 29) L2c|LINE|L2 -128887 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 309-223 chr19 12074279 12074457 + 2 NA exon (NM_001136501, exon 3 of 4) exon (NM_001136501, exon 3 of 4) 9637 NM_001136501 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 482-299 chr9 104568215 104568519 + 2 NA promoter-TSS (NM_001004483) promoter-TSS (NM_001004483) -801 NM_001004483 138802 Hs.553599 NM_001004483 ENSG00000186943 OR13C8 OR37H|OR9-10 olfactory receptor family 13 subfamily C member 8 protein-coding 320-59 chr10 58088729 58089023 + 2 NA Intergenic Intergenic 179018 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 155-8 chr1 90604677 90604778 + 2 NA Intergenic Intergenic -53023 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 388-138 chr18 41854221 41854497 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -100875 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 364-415 chr7 71190815 71191025 + 2 NA intron (NM_022479, intron 1 of 10) AluJb|SINE|Alu 58776 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 484-159 chr21 28817627 28818018 + 2 NA Intergenic MIRb|SINE|MIR 67545 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 278-92 chr13 71152947 71153219 + 2 NA intron (NR_047699, intron 2 of 3) L1M4a2|LINE|L1 137942 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 332-179 chr16 22792117 22792358 + 2 NA Intergenic L1MD2|LINE|L1 -21925 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 269-73 chr11 100020712 100020959 + 2 NA intron (NM_001243270, intron 8 of 23) L1M3|LINE|L1 464690 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 359-300 chr21 39588019 39588339 + 2 NA Intergenic Intergenic 24643 NR_026543 114041 Hs.375120 NM_153754 ENSG00000184809 B3GALT5-AS1 C21orf88 B3GALT5 antisense RNA 1 ncRNA 202-171 chr3 110028964 110029098 + 2 NA Intergenic MIRb|SINE|MIR 426203 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 258-151 chr16 19933440 19933622 + 2 NA Intergenic MIR|SINE|MIR -47897 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 151-75 chr7 17395820 17395914 + 2 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 20950 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 246-7 chr1 85738063 85738200 + 2 NA intron (NM_152890, intron 57 of 59) intron (NM_152890, intron 57 of 59) -29698 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 326-148 chr14 53840023 53840199 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 108373 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 639-42 chr15 46180302 46180800 + 2 NA Intergenic L1M2|LINE|L1 475356 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 253-134 chr14 63708761 63709003 + 2 NA intron (NM_030791, intron 1 of 2).2 MIR|SINE|MIR 19183 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 365-99 chr12 54937962 54938191 + 2 NA Intergenic MER57D|LTR|ERV1 35656 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 476-91 chr15 44161003 44161395 + 2 NA intron (NM_001286490, intron 1 of 15) L2c|LINE|L2 33247 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 638-18 chr10 66544418 66544941 + 2 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -381357 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 475-222 chr5 43888573 43889026 + 2 NA Intergenic LTR81B|LTR|Gypsy -285569 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 394-279 chr5 136888713 136889085 + 2 NA Intergenic Intergenic -239298 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 190-102 chr20 10998227 10998394 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -28234 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 258-17 chr1 157750861 157751043 + 2 NA intron (NM_001159488, intron 7 of 8) L1M5|LINE|L1 26180 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 604-153 chr7 62806453 62806860 + 2 NA Intergenic ALR/Alpha|Satellite|centr 497400 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 322-333 chr3 94878327 94878537 + 2 NA Intergenic Intergenic -59831 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 239-157 chr2 3921803 3921970 + 2 NA Intergenic Intergenic 52146 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 356-70 chr10 127941989 127942261 + 2 NA intron (NM_001323356, intron 1 of 19) intron (NM_001323356, intron 1 of 19) 35022 NM_001323356 5791 Hs.127022 NM_006504 ENSG00000132334 PTPRE HPTPE|PTPE|R-PTP-EPSILON protein tyrosine phosphatase receptor type E protein-coding 331-392 chr4 112582632 112582933 + 2 NA intron (NM_018392, intron 15 of 27) L1MA4|LINE|L1 -54182 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 264-159 chr16 81840870 81841110 + 2 NA intron (NM_002661, intron 2 of 32) intron (NM_002661, intron 2 of 32) 61699 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 253-75 chr11 55949323 55949564 + 2 NA Intergenic LTR28|LTR|ERV1 -13043 NM_006637 10798 Hs.533706 NM_006637 ENSG00000167825 OR5I1 HSOlf1|OLF1 olfactory receptor family 5 subfamily I member 1 protein-coding 229-118 chr14 82825663 82825820 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 183109 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 269-419 chr9 27108667 27108900 + 2 NA promoter-TSS (NM_001290078) promoter-TSS (NM_001290078) -358 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 330-172 chr15 68903738 68904033 + 2 NA Intergenic L1MC4|LINE|L1 -26615 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 311-509 chr8 88512176 88512454 + 2 NA Intergenic L1MA9|LINE|L1 -184832 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 815-19 chr15 81461684 81462325 + 2 NA Intergenic L1M2|LINE|L1 -87791 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 204-20 chr10 8674621 8674735 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -80287 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 169-35 chr14 33293841 33293983 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 355033 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 361-78 chr11 80390375 80390653 + 2 NA Intergenic Intergenic 372289 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 266-177 chr2 71999249 71999411 + 2 NA Intergenic Intergenic 148532 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 261-109 chr14 70493257 70493499 + 2 NA Intergenic L1MA1|LINE|L1 -9622 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 212-341 chr9 13297814 13298002 + 2 NA Intergenic L1M5|LINE|L1 -18195 NM_001330637 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 422-84 chr14 66675601 66675843 + 2 NA intron (NM_001024218, intron 1 of 21) L1MA5|LINE|L1 168315 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 205-55 chr11 90952793 90952910 + 2 NA Intergenic Intergenic -83649 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 289-233 chr2 101901438 101901696 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -81898 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 539-217 chr9 80091211 80091744 + 2 NA Intergenic Intergenic 116454 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 457-74 chr15 61839070 61839425 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger 109329 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 583-114 chr3 110021200 110021696 + 2 NA Intergenic Intergenic 418620 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 294-115 chr14 51789596 51789759 + 2 NA Intergenic L3|LINE|CR1 -70935 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 279-251 chr3 36134652 36134828 + 2 NA Intergenic MER52-int|LTR|ERV1 -245747 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 331-475 chr6 151483533 151483752 + 2 NA Intergenic Intergenic -10375 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 405-135 chr2 49551045 49551366 + 2 NA Intergenic L1M5|LINE|L1 -396678 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 334-468 chr6 120918956 120919275 + 2 NA Intergenic AluSx|SINE|Alu 415365 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 266-455 chr9 137244465 137244639 + 2 NA TTS (NM_006088) TTS (NM_006088) 3199 NM_001001710 401565 Hs.522530 NM_001001710 ENSG00000188163 FAM166A HSD46 family with sequence similarity 166 member A protein-coding 419-48 chr11 23317609 23317880 + 2 NA Intergenic Intergenic 101446 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 654-75 chr20 40668044 40668452 + 2 NA Intergenic Intergenic 20988 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 400-40 chr10 99509266 99509587 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 21751 NR_120618 101927324 Hs.642588 NR_120618 ENSG00000257582 LINC01475 - long intergenic non-protein coding RNA 1475 ncRNA 291-304 chr3 182111134 182111384 + 2 NA Intergenic Intergenic 158895 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 727-22 chr12 54452107 54452702 + 2 NA intron (NR_120487, intron 3 of 3) intron (NR_120487, intron 3 of 3) 21198 NM_144594 121355 Hs.524476 NM_144594 ENSG00000170627 GTSF1 Cue110|FAM112B gametocyte specific factor 1 protein-coding 465-220 chr5 40457275 40457710 + 2 NA Intergenic Intergenic -222423 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 241-285 chr5 7865486 7865686 + 2 NA intron (NR_073608, intron 2 of 5) intron (NR_073608, intron 2 of 5) 3445 NM_024091 79072 Hs.653162 NM_024091 ENSG00000124279 FASTKD3 - FAST kinase domains 3 protein-coding 257-26 chr1 215225539 215225722 + 2 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 142893 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 547-248 chr8 127355486 127355830 + 2 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -44741 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 346-433 chr6 99029218 99029494 + 2 NA Intergenic Intergenic -81350 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 514-237 chr5 136700795 136701210 + 2 NA Intergenic Intergenic -335526 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 490-199 chr4 55329579 55329878 + 2 NA Intergenic AluSx4|SINE|Alu -16514 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 215-339 chr9 77220353 77220472 + 2 NA intron (NM_001018038, intron 12 of 68) intron (NM_001018038, intron 12 of 68) -42495 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 365-339 chr6 4379366 4379575 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -109328 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 116-35 chr4 44274972 44275068 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 173789 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 324-46 chr10 9854143 9854366 + 2 NA Intergenic Intergenic -204468 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 417-287 chr8 118763546 118763912 + 2 NA Intergenic Intergenic -141766 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 281-63 chr11 39932365 39932618 + 2 NA Intergenic L2a|LINE|L2 360639 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 543-164 chr3 19088649 19089010 + 2 NA Intergenic L1MB8|LINE|L1 -59681 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 354-121 chr13 78675735 78675926 + 2 NA Intergenic L1MC|LINE|L1 -16675 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 388-274 chr5 42175285 42175594 + 2 NA promoter-TSS (NR_104635) promoter-TSS (NR_104635) -94 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 464-12 chr1 233821476 233821844 + 2 NA Intergenic L1MB1|LINE|L1 -83016 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 461-198 chr4 88647222 88647545 + 2 NA intron (NM_001318505, intron 3 of 8) intron (NM_001318505, intron 3 of 8) 50446 NM_153757 266812 Hs.12554 NM_153757 ENSG00000177432 NAP1L5 DRLM nucleosome assembly protein 1 like 5 protein-coding 677-17 chr10 114014887 114015463 + 2 NA Intergenic Intergenic -28691 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 268-269 chr4 33164892 33165039 + 2 NA Intergenic Intergenic 813927 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 244-296 chr5 36913408 36913640 + 2 NA intron (NM_015384, intron 1 of 45) AluJo|SINE|Alu 36755 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 429-125 chr18 13266810 13267145 + 2 NA intron (NM_181482, intron 1 of 5) Tigger10|DNA|TcMar-Tigger -11128 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 418-59 chr12 117547993 117548254 + 2 NA intron (NM_173598, intron 9 of 19) L1MD2|LINE|L1 -186321 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 505-243 chr5 82904054 82904438 + 2 NA Intergenic L1MC1|LINE|L1 -44410 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 578-145 chr5 145136140 145136612 + 2 NA Intergenic L1MA1|LINE|L1 698966 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 250-322 chr4 124330390 124330634 + 2 NA Intergenic Intergenic 227922 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 373-280 chr4 32028675 32028974 + 2 NA intron (NR_125936, intron 1 of 2) MER65-int|LTR|ERV1 -6402 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 387-202 chr20 33625719 33625980 + 2 NA intron (NM_001039709, intron 6 of 10) AluY|SINE|Alu -36478 NM_080825 128864 Hs.324104 NM_080825 ENSG00000149609 C20orf144 dJ63M2.6 chromosome 20 open reading frame 144 protein-coding 334-41 chr1 233950682 233950872 + 2 NA intron (NM_173508, intron 2 of 7) L2a|LINE|L2 46101 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 198-250 chr8 119197067 119197216 + 2 NA Intergenic LTR1A2|LTR|ERV1 -11222 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 293-187 chr2 75882422 75882616 + 2 NA Intergenic L1ME1|LINE|L1 -171604 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 285-79 chr12 15997154 15997339 + 2 NA intron (NM_015954, intron 6 of 8) intron (NM_015954, intron 6 of 8) 85914 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 447-97 chr17 69988103 69988390 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 26539 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 273-254 chr20 7317226 7317448 + 2 NA Intergenic L1MEc|LINE|L1 -9905 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 216-356 chrX 40020655 40020809 + 2 NA Intergenic Intergenic 76734 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 174-79 chr20 60098542 60098661 + 2 NA intron (NR_109918, intron 2 of 4) L1ME4b|LINE|L1 10915 NR_109918 729296 Hs.534781 NR_109916 LOC729296 - uncharacterized LOC729296 ncRNA 346-221 chr19 57561690 57561988 + 2 NA Intergenic LTR25-int|LTR|ERV1 -1976 NM_001277092 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 318-508 chr7 49773083 49773326 + 2 NA promoter-TSS (NM_198570) promoter-TSS (NM_198570) -434 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 438-177 chr3 115133610 115134002 + 2 NA intron (NM_001348800, intron 1 of 11) L1MB7|LINE|L1 13482 NM_001348803 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 161-47 chr2 18039003 18039099 + 2 NA Intergenic Intergenic 160384 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 563-152 chr5 66266646 66266959 + 2 NA Intergenic L1M4|LINE|L1 -57356 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 219-142 chr18 8434094 8434243 + 2 NA Intergenic Intergenic -67134 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 379-111 chr16 25764636 25764940 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 72829 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 198-52 chr12 58745968 58746140 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 35662 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 655-40 chr14 79159600 79160212 + 2 NA intron (NR_073547, intron 14 of 20) HSMAR2|DNA|TcMar-Mariner -40076 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 385-96 chr14 43736214 43736562 + 2 NA Intergenic Intergenic 770895 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 362-194 chr17_KI270729v1_random 111829 112106 + 2 NA NA (GATTCCATTC)n|Simple_repeat|Simple_repeat NA NA 370-73 chr10 127821807 127822121 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 70977 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 485-274 chr7 113957960 113958343 + 2 NA Intergenic L1PA13|LINE|L1 -39142 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 176-38 chr16 56174919 56175044 + 2 NA intron (NR_027078, intron 2 of 4) MLT1D|LTR|ERVL-MaLR 16113 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 672-96 chr6 162001094 162001574 + 2 NA intron (NM_013988, intron 2 of 8) L1MC|LINE|L1 530357 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 248-360 chr6 164384729 164384881 + 2 NA Intergenic Charlie19a|DNA|hAT-Charlie 437258 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 340-301 chr2 226194448 226194664 + 2 NA Intergenic L2b|LINE|L2 51762 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 291-62 chr10 131703291 131703510 + 2 NA Intergenic L1MC4|LINE|L1 86799 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 595-13 chr1 213437263 213437680 + 2 NA Intergenic L1MEg|LINE|L1 386230 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 170-61 chr18 38166697 38166836 + 2 NA Intergenic L1MD3|LINE|L1 509631 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 245-224 chr22 42032271 42032453 + 2 NA Intergenic Intergenic 33574 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 265-30 chr10 28104715 28104956 + 2 NA intron (NR_134518, intron 10 of 16) intron (NR_134518, intron 10 of 16) -31457 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 443-87 chr14 46783480 46783861 + 2 NA Intergenic Intergenic -131889 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 334-355 chr3 103192625 103192858 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 331375 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 269-52 chr10 107231067 107231327 + 2 NA Intergenic LTR16A2|LTR|ERVL -66491 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 196-144 chr2 190954250 190954415 + 2 NA intron (NM_014905, intron 15 of 17) intron (NM_014905, intron 15 of 17) 59918 NM_007315 6772 Hs.642990 NM_007315 ENSG00000115415 STAT1 CANDF7|IMD31A|IMD31B|IMD31C|ISGF-3|STAT91 signal transducer and activator of transcription 1 protein-coding 246-293 chr4 54899843 54900029 + 2 NA Intergenic L2a|LINE|L2 225659 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 310-87 chr11 104265766 104265923 + 2 NA Intergenic L1PREC2|LINE|L1 -101697 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 361-469 chr8 141886603 141886822 + 2 NA Intergenic L1MEi|LINE|L1 -100399 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 299-384 chr5 144075084 144075332 + 2 NA Intergenic Intergenic 95451 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 330-35 chr1 186747702 186747990 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 67192 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 297-351 chr4 180798993 180799218 + 2 NA Intergenic Intergenic 360044 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 477-119 chr17 54812250 54812536 + 2 NA Intergenic MIRb|SINE|MIR -88298 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 530-130 chr2 102213509 102213861 + 2 NA intron (NM_001351447, intron 4 of 9) L1M5|LINE|L1 26371 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 268-358 chr7 3856185 3856428 + 2 NA intron (NM_152744, intron 5 of 44) L1ME3G|LINE|L1 -273379 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 447-201 chr4 126825881 126826138 + 2 NA Intergenic LTR40b|LTR|ERVL -806948 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 323-212 chr19 9382394 9382666 + 2 NA TTS (NM_001202425) TTS (NM_001202425) 6214 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 239-174 chr2 76076314 76076481 + 2 NA Intergenic MIR3|SINE|MIR -365482 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 496-197 chr4 71906194 71906595 + 2 NA Intergenic Intergenic -100874 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 404-203 chr22 33423186 33423472 + 2 NA intron (NM_133642, intron 7 of 14) MER20B|DNA|hAT-Charlie 13340 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 427-243 chr7 33231874 33232195 + 2 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 102470 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 335-359 chr3 110684987 110685198 + 2 NA Intergenic Intergenic 384867 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 489-134 chr2 77916189 77916602 + 2 NA intron (NR_110286, intron 1 of 2) intron (NR_110286, intron 1 of 2) 461 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 350-189 chr18 7530655 7530999 + 2 NA Intergenic HAL1b|LINE|L1 -36489 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 176-86 chr3 95572991 95573132 + 2 NA Intergenic LTR38C|LTR|ERV1 110132 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 254-417 chr8 108016295 108016477 + 2 NA intron (NM_178565, intron 2 of 5) HAL1|LINE|L1 65553 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 288-354 chr6 14673738 14673980 + 2 NA Intergenic L1MB8|LINE|L1 -388405 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 504-124 chr2 62487014 62487447 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 18965 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 219-260 chr4 77247275 77247434 + 2 NA Intergenic LTR16B2|LTR|ERVL 90147 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 402-161 chr2 121071927 121072222 + 2 NA Intergenic L2a|LINE|L2 213128 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 206-259 chr8 34477535 34477708 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -306300 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 497-238 chr5 150927553 150927908 + 2 NA Intergenic L1M3b|LINE|L1 18854 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 261-413 chr9 104709974 104710174 + 2 NA Intergenic Intergenic 15652 NM_001004484 286365 Hs.553683 NM_001004484 ENSG00000179055 OR13D1 OR9-15 olfactory receptor family 13 subfamily D member 1 protein-coding 638-96 chr3 181944792 181945315 + 2 NA Intergenic AluY|SINE|Alu -7311 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 294-232 chr2 133495202 133495393 + 2 NA intron (NM_207481, intron 3 of 17) MER4D1|LTR|ERV1 73166 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 341-117 chr12 55859820 55860142 + 2 NA Intergenic LTR49|LTR|ERV1 -17045 NR_073606 4327 Hs.591033 NM_002429 ENSG00000123342 MMP19 CODA|MMP18|RASI-1 matrix metallopeptidase 19 protein-coding 388-187 chr20 52011419 52011696 + 2 NA Intergenic L1ME3G|LINE|L1 93927 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 253-2 chr1 34303793 34303988 + 2 NA Intergenic L1MDb|LINE|L1 126983 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 244-117 chr16 27310689 27310893 + 2 NA Intergenic Intergenic -3183 NM_000418 3566 Hs.513457 NM_000418 ENSG00000077238 IL4R CD124|IL-4RA|IL4RA interleukin 4 receptor protein-coding 415-24 chr1 229021010 229021258 + 2 NA Intergenic L1MC5|LINE|L1 153667 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 194-62 chr14 84212057 84212211 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -1059798 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 191-22 chr1 237411452 237411625 + 2 NA intron (NM_001035, intron 10 of 104) (ATCATG)n|Simple_repeat|Simple_repeat -59581 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 342-8 chr1 40305510 40305783 + 2 NA intron (NM_001852, intron 21 of 31) MIR3|SINE|MIR 11640 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 341-228 chr2 8224801 8225135 + 2 NA intron (NR_152741, intron 9 of 9) MLT2D|LTR|ERVL 103451 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 362-162 chr14 92786839 92787094 + 2 NA Intergenic Intergenic -7339 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 309-401 chr4 88779253 88779542 + 2 NA intron (NM_001015045, intron 5 of 17) intron (NM_001015045, intron 5 of 17) 43964 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 408-18 chr1 115880045 115880391 + 2 NA Intergenic Intergenic -39092 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 355-167 chr15 36824959 36825184 + 2 NA Intergenic L1ME1|LINE|L1 -6565 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 700-25 chr13 40705629 40706286 + 2 NA Intergenic L1MC4a|LINE|L1 21930 NR_031723 100313896 NR_031723 ENSG00000211491 MIR320D1 MIR320D-1|MIRN320D1|mir-320d-1 microRNA 320d-1 ncRNA 228-145 chr18 72139048 72139223 + 2 NA Intergenic Intergenic -356909 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 279-411 chr8 48331020 48331228 + 2 NA Intergenic Intergenic -220443 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 220-116 chr15 53527161 53527339 + 2 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) 13602 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 473-84 chr14 55391576 55391961 + 2 NA intron (NM_014924, intron 3 of 9) intron (NM_014924, intron 3 of 9) 20090 NM_014924 22863 Hs.414809 NM_014924 ENSG00000126775 ATG14 ATG14L|BARKOR|KIAA0831 autophagy related 14 protein-coding 158-46 chr19 55977405 55977512 + 2 NA intron (NM_001317000, intron 8 of 9) (AT)n|Simple_repeat|Simple_repeat -22268 NM_153447 126206 Hs.356872 NM_153447 ENSG00000171487 NLRP5 CLR19.8|MATER|NALP5|PAN11|PYPAF8 NLR family pyrin domain containing 5 protein-coding 245-20 chr1 183117283 183117484 + 2 NA exon (NM_002293, exon 9 of 28) exon (NM_002293, exon 9 of 28) 23887 NR_149048 110841583 Hs.604063 NR_149048 ENSG00000224468 LAMC1-AS1 lnc-LAMC2-1:1 LAMC1 antisense RNA 1 ncRNA 516-235 chr7 71709083 71709443 + 2 NA intron (NM_022479, intron 9 of 10) L1PA16|LINE|L1 -401493 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 235-180 chr2 132459908 132460127 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 26306 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 516-106 chr18 57515607 57515918 + 2 NA Intergenic L1PA10|LINE|L1 70940 NM_001371094 386-372 chr9 24442358 24442638 + 2 NA Intergenic L1P4|LINE|L1 103178 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 382-447 chrX 67409877 67410088 + 2 NA Intergenic L1M5|LINE|L1 -134039 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 308-451 chr7 14554335 14554577 + 2 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 286994 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 239-270 chr4 31534215 31534382 + 2 NA intron (NR_149121, intron 1 of 2) L1MC3|LINE|L1 27754 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 254-61 chr11 81780631 81780873 + 2 NA Intergenic MIR|SINE|MIR 110084 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 295-461 chr8 26277702 26277937 + 2 NA Intergenic Intergenic -13689 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 415-167 chr22 34496413 34496677 + 2 NA Intergenic Intergenic 501371 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 206-2 chr1 29993467 29993617 + 2 NA Intergenic L2c|LINE|L2 44070 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 649-124 chr9 132534664 132535200 + 2 NA intron (NM_207417, intron 4 of 6) L1MC5a|LINE|L1 -47674 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 339 chr1 5597016 5597248 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 265609 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 427-26 chr10 80986712 80986961 + 2 NA Intergenic Intergenic 337039 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 263-421 chr8 91718051 91718252 + 2 NA Intergenic Intergenic 299529 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 271-418 chr7 132599252 132599498 + 2 NA intron (NM_181775, intron 2 of 4) L1ME5|LINE|L1 -22811 NM_020911 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 365-365 chr7 4499822 4500085 + 2 NA Intergenic Intergenic -182342 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 226-139 chr18 35957914 35958104 + 2 NA Intergenic L1ME2z|LINE|L1 -14616 NM_001201476 83608 Hs.37883 NM_031446 ENSG00000141428 C18orf21 HsT3108|PNAS-124|PNAS-131|XTP13 chromosome 18 open reading frame 21 protein-coding 330-566 chrX 56826189 56826413 + 2 NA Intergenic ERVL-int|LTR|ERVL -88717 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 472-249 chr5 67448822 67449077 + 2 NA Intergenic L1M2a|LINE|L1 197840 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 246-139 chr16 3587708 3587870 + 2 NA intron (NM_032444, intron 12 of 14) intron (NM_032444, intron 12 of 14) -10386 NM_178844 197358 Hs.592091 NM_178844 ENSG00000167984 NLRC3 CLR16.2|NOD3 NLR family CARD domain containing 3 protein-coding 315 chr1 2824401 2824635 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -23650 NM_001242672 100287898 Hs.632363 NM_001242672 ENSG00000215912 TTC34 - tetratricopeptide repeat domain 34 protein-coding 698-25 chr15 92853595 92854187 + 2 NA Intergenic Intergenic -28952 NR_037600 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 213-222 chr5 15705826 15706029 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -90925 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 380-125 chr14 67541973 67542282 + 2 NA intron (NM_020715, intron 2 of 28) intron (NM_020715, intron 2 of 28) -8277 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 277-109 chr14 30089663 30089842 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -161905 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 268-433 chr9 27881673 27881877 + 2 NA Intergenic Intergenic -307909 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 358-366 chr5 45592286 45592479 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 103998 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 296-466 chr8 87058597 87058843 + 2 NA intron (NM_173538, intron 4 of 10) THE1C-int|LTR|ERVL-MaLR 192305 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 787-35 chr4 140166017 140166563 + 2 NA Intergenic L1ME3G|LINE|L1 -12106 NM_018717 55534 Hs.586165 NM_018717 ENSG00000196782 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3 mastermind like transcriptional coactivator 3 protein-coding 569-154 chr6 55772385 55772772 + 2 NA intron (NM_001329754, intron 4 of 5) intron (NM_001329754, intron 4 of 5) 103012 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 281-400 chr6 147353816 147354063 + 2 NA intron (NM_139244, intron 20 of 25) intron (NM_139244, intron 20 of 25) -149325 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 506-196 chr4 11217916 11218291 + 2 NA Intergenic Intergenic -150724 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 240-452 chrX 152149943 152150173 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -11480 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 418-130 chr2 160877904 160878262 + 2 NA Intergenic L2a|LINE|L2 -258872 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 128-80 chr8 114076661 114076746 + 2 NA Intergenic MER96B|DNA|hAT-Tip100 -639764 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 194-113 chr21 35224168 35224281 + 2 NA Intergenic Intergenic -174926 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 321-40 chr1 239033680 239033934 + 2 NA Intergenic L1ME1|LINE|L1 -352761 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 334-39 chr1 226930455 226930740 + 2 NA Intergenic Intergenic -9697 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 336-174 chr15 53569171 53569464 + 2 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) -28214 NR_102335 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 354-51 chr10 57390237 57390554 + 2 NA Intergenic Intergenic -85836 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 402-259 chr5 19751262 19751465 + 2 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 134909 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 530-240 chr7 108114712 108115171 + 2 NA intron (NM_001318048, intron 3 of 17) intron (NM_001318048, intron 3 of 17) 15420 NM_007356 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 250-407 chr7 118235970 118236149 + 2 NA exon (NM_019644, exon 4 of 7) exon (NM_019644, exon 4 of 7) 11355 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 406-307 chr8 142055476 142055857 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -120673 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 221-98 chr16 8523717 8523900 + 2 NA Intergenic MER66A|LTR|ERV1 66030 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 375-422 chr8 128322373 128322736 + 2 NA Intergenic Intergenic 172438 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 558-104 chr2 124763929 124764397 + 2 NA intron (NM_130773, intron 16 of 23) intron (NM_130773, intron 16 of 23) 738876 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 299-86 chr11 106220061 106220341 + 2 NA Intergenic Intergenic -29818 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 192-108 chr2 182466273 182466379 + 2 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -39278 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 268-137 chr15 95809354 95809572 + 2 NA Intergenic Intergenic 318378 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 310-435 chr5 163136834 163137031 + 2 NA Intergenic Intergenic -300639 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 739-16 chr13 107677072 107677604 + 2 NA intron (NM_001080396, intron 1 of 2) AluSz6|SINE|Alu -146090 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 612-72 chr2 174172966 174173360 + 2 NA intron (NM_001011708, intron 3 of 9) intron (NM_001011708, intron 3 of 9) 75369 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 275-329 chr7 44535540 44535780 + 2 NA intron (NM_001300967, intron 5 of 6) A-rich|Low_complexity|Low_complexity 5670 NM_001300967 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 419-207 chr4 85581602 85581847 + 2 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) 106574 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 354-222 chr2 128906235 128906501 + 2 NA Intergenic Intergenic 41768 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 191-218 chr8 127378469 127378617 + 2 NA intron (NR_117099, intron 3 of 3) MER20|DNA|hAT-Charlie -21856 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 376-211 chr20 19574275 19574526 + 2 NA intron (NM_020689, intron 3 of 16) MLT1H|LTR|ERVL-MaLR -289804 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 170-113 chr5 44782255 44782378 + 2 NA intron (NR_109863, intron 1 of 3) MER77|LTR|ERVL 26477 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 222-316 chr6 19525138 19525334 + 2 NA Intergenic Intergenic 75415 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 191-92 chr2 19828507 19828654 + 2 NA Intergenic L1MEf|LINE|L1 -40274 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 217-11 chr1 75495610 75495823 + 2 NA intron (NM_001320285, intron 2 of 25) L1MA9|LINE|L1 115398 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 330-209 chr17 41450137 41450379 + 2 NA Intergenic L1MC4|LINE|L1 -8914 NM_006771 8687 Hs.248188 NM_006771 ENSG00000171360 KRT38 HA8|KRTHA8|hHa8 keratin 38 protein-coding 258-330 chr5 110199225 110199422 + 2 NA Intergenic L1M4c|LINE|L1 314592 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 492-62 chr12 40681479 40681886 + 2 NA Intergenic Intergenic -10757 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 990-10 chr16 63083046 63083797 + 2 NA Intergenic Intergenic -1046983 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 280-375 chr7 21072950 21073197 + 2 NA Intergenic Intergenic 237642 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 300-478 chr8 119057240 119057523 + 2 NA intron (NM_001324095, intron 3 of 7) THE1D|LTR|ERVL-MaLR -9866 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 286-200 chr2 41647154 41647404 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -230276 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 305-101 chr11 85708275 85708574 + 2 NA intron (NM_001289609, intron 4 of 10) intron (NM_001289609, intron 4 of 10) 10670 NM_001365830 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 554-118 chr2 115011465 115011913 + 2 NA intron (NM_001321910, intron 2 of 26) L1PBa|LINE|L1 -52884 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 256-313 chr5 26959110 26959306 + 2 NA intron (NM_016279, intron 2 of 11) L1MB5|LINE|L1 79378 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 204-130 chr19 30588718 30588869 + 2 NA intron (NM_001352260, intron 4 of 5) MER113|DNA|hAT-Charlie 216409 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 291-327 chr4 110328231 110328405 + 2 NA Intergenic Intergenic -129703 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 409-242 chr5 24121063 24121449 + 2 NA intron (NR_131245, intron 4 of 4) LTR108d_Mam|LTR|ERVL 169908 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 529-152 chr4 7568052 7568466 + 2 NA intron (NM_020777, intron 3 of 26) MER119|DNA|hAT-Charlie 108231 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 460-298 chr8 133143081 133143514 + 2 NA Intergenic MIRc|SINE|MIR -40695 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 353-114 chr12 61030029 61030316 + 2 NA Intergenic Intergenic 1162667 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 276-350 chr4 100106124 100106294 + 2 NA Intergenic AluJb|SINE|Alu -83824 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 344-480 chr8 34624502 34624706 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -159317 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 162-118 chr7 23626176 23626310 + 2 NA intron (NM_138771, intron 3 of 3) intron (NM_138771, intron 3 of 3) 28861 NM_138771 90693 Hs.232296 NM_138771 ENSG00000169193 CCDC126 - coiled-coil domain containing 126 protein-coding 539-101 chr19 56376806 56377220 + 2 NA non-coding (NR_003127, exon 7 of 7) non-coding (NR_003127, exon 7 of 7) -8630 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 296-483 chr8 124812468 124812640 + 2 NA Intergenic L1PA15|LINE|L1 -9431 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 743-21 chr14 48612805 48613369 + 2 NA Intergenic AluSq2|SINE|Alu -818073 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 352-110 chr12 77626018 77626272 + 2 NA Intergenic L1MA4|LINE|L1 -204749 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 300-216 chr2 180106741 180106976 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -99561 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 385-167 chr2 32785751 32786052 + 2 NA intron (NM_017735, intron 15 of 19) L1MEi|LINE|L1 -39532 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 400-41 chr10 105155586 105155945 + 2 NA intron (NM_014978, intron 9 of 26) intron (NM_014978, intron 9 of 26) -489549 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 190-149 chr5 102260471 102260585 + 2 NA intron (NM_180991, intron 5 of 12) intron (NM_180991, intron 5 of 12) 35756 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 273-190 chr18 69593632 69593838 + 2 NA intron (NM_152721, intron 2 of 7) intron (NM_152721, intron 2 of 7) 123804 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 363-461 chr8 135023860 135024152 + 2 NA Intergenic Intergenic 174071 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 119-18 chr16 7741443 7741526 + 2 NA Intergenic Intergenic 408639 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 576-91 chr2 152949195 152949674 + 2 NA Intergenic Intergenic 230797 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 490-153 chr2 128522000 128522315 + 2 NA Intergenic Intergenic -203289 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 276-321 chr4 13321996 13322216 + 2 NA Intergenic L1MA5|LINE|L1 162234 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 552-19 chr10 59497874 59498323 + 2 NA Intergenic Intergenic -134917 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 381-133 chr17 9858564 9858897 + 2 NA intron (NM_004246, intron 6 of 12) L1MEg|LINE|L1 32806 NM_004246 9340 Hs.248202 NM_004246 ENSG00000065325 GLP2R - glucagon like peptide 2 receptor protein-coding 329-588 chr8 123720339 123720636 + 2 NA intron (NM_004306, intron 1 of 10) intron (NM_004306, intron 1 of 10) 16906 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 685-96 chr8 108428873 108429480 + 2 NA Intergenic MIRb|SINE|MIR -14407 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 375-379 chr7 51981657 51981880 + 2 NA Intergenic Intergenic -588512 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 191-59 chr15 61381336 61381469 + 2 NA Intergenic L1ME3G|LINE|L1 -152100 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 386-128 chr17 34333318 34333622 + 2 NA Intergenic L1ME3|LINE|L1 14035 NM_005623 6355 Hs.271387 NM_005623 ENSG00000108700 CCL8 HC14|MCP-2|MCP2|SCYA10|SCYA8 C-C motif chemokine ligand 8 protein-coding 656-118 chr7 38640587 38641025 + 2 NA Intergenic FLAM_A|SINE|Alu -9239 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 294-259 chr20 41914256 41914496 + 2 NA Intergenic L1ME3B|LINE|L1 -295999 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 243-326 chr4 73144136 73144315 + 2 NA intron (NM_032217, intron 11 of 33) intron (NM_032217, intron 11 of 33) -74466 NM_001300729 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 289-69 chr10 104439650 104439909 + 2 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 40496 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 351-111 chr13 80094664 80094915 + 2 NA Intergenic Intergenic 83712 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 413-144 chr2 90072553 90072855 + 2 NA Intergenic Intergenic -434797 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 316-581 chr9 73419364 73419599 + 2 NA Intergenic Intergenic 267616 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 388-33 chr1 226507516 226507716 + 2 NA Intergenic L1MC5a|LINE|L1 -41148 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 373-322 chr5 62672644 62672923 + 2 NA Intergenic Intergenic 93964 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 358-226 chr2 102576168 102576455 + 2 NA Intergenic L1MA5|LINE|L1 -43242 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 736-44 chr2 228341911 228342571 + 2 NA Intergenic L2|LINE|L2 -160554 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 242-437 chr9 98833868 98834036 + 2 NA intron (NM_024642, intron 4 of 9) MIRc|SINE|MIR 26282 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 434-226 chr5 78704890 78705280 + 2 NA Intergenic Intergenic -56313 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 159-85 chr7 25560328 25560436 + 2 NA Intergenic Intergenic 102758 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 409-312 chr9 104412277 104412556 + 2 NA Intergenic MER4-int|LTR|ERV1 -91847 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 349-210 chr17 74190953 74191242 + 2 NA Intergenic Intergenic -12581 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 382-42 chr10 83396250 83396462 + 2 NA Intergenic Intergenic 280733 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 590-157 chr7 77861767 77862268 + 2 NA intron (NM_001366089, intron 2 of 18) AluSp|SINE|Alu 21887 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 561-48 chr12 44460896 44461196 + 2 NA Intergenic MIRb|SINE|MIR 414615 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 369-31 chr10 26280533 26280794 + 2 NA intron (NM_000818, intron 11 of 16) MER4A1|LTR|ERV1 63889 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 152-43 chr2 17026253 17026366 + 2 NA Intergenic L1M4|LINE|L1 -360475 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 126-28 chr18 3566568 3566661 + 2 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -27500 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 482-128 chr2 106748888 106749323 + 2 NA Intergenic Intergenic 136923 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 431-93 chr15 87846095 87846463 + 2 NA Intergenic MIRb|SINE|MIR 99989 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 235-171 chr2 77365109 77365335 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 157154 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 247-376 chr7 24515218 24515430 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -58128 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 304-77 chr11 39225363 39225647 + 2 NA Intergenic L1MEg|LINE|L1 576647 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 425-74 chr12 128432811 128433159 + 2 NA intron (NM_001136103, intron 2 of 8) Tigger1|DNA|TcMar-Tigger 138893 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 204-228 chr4 185956111 185956303 + 2 NA 5' UTR (NM_001270771, exon 1 of 24) 5' UTR (NM_001270771, exon 1 of 24) 165 NM_001270771 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 264-14 chr1 158986061 158986311 + 2 NA Intergenic L1PA15|LINE|L1 -13790 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 269-275 chr4 61662828 61662983 + 2 NA intron (NM_001371343, intron 5 of 23) MER52A|LTR|ERV1 460733 NM_001371342 273-161 chr16 63775700 63775906 + 2 NA Intergenic Intergenic 1346260 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 328-63 chr10 107307267 107307487 + 2 NA Intergenic Intergenic -142671 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 460-137 chr2 50991209 50991579 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 40738 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 339-135 chr12 116619646 116619837 + 2 NA Intergenic L1ME4b|LINE|L1 60360 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 172-75 chr3 21217358 21217486 + 2 NA Intergenic Intergenic -188304 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 346-292 chr22 35375969 35376229 + 2 NA Intergenic Intergenic -4997 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 156-103 chr8 86434450 86434541 + 2 NA intron (NM_007013, intron 14 of 24) L2a|LINE|L2 74191 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 293-13 chr1 152276986 152277245 + 2 NA Intergenic L1PA14|LINE|L1 -36344 NR_103778 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 333-168 chr15 95170186 95170439 + 2 NA Intergenic Intergenic 156788 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 319-299 chr21 18905577 18905795 + 2 NA Intergenic Intergenic -145874 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 332-495 chr7 84908723 84908924 + 2 NA Intergenic Intergenic 213108 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 321-28 chr1 184343990 184344215 + 2 NA Intergenic L1ME5|LINE|L1 -42927 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 505-180 chr20 61450391 61450765 + 2 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -48843 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 163-67 chr2 127586702 127586856 + 2 NA intron (NM_001080527, intron 14 of 46) intron (NM_001080527, intron 14 of 46) -15817 NR_132317 105373609 Hs.677195 NR_132317 LOC105373609 - uncharacterized LOC105373609 ncRNA 324-535 chr8 93661309 93661574 + 2 NA intron (NR_033858, intron 4 of 10) MIR|SINE|MIR 38992 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 416-49 chr10 82426650 82426999 + 2 NA intron (NR_163253, intron 3 of 10) AluJb|SINE|Alu -193904 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 378-436 chr8 80499473 80499724 + 2 NA exon (NM_023929, exon 2 of 7) exon (NM_023929, exon 2 of 7) 13372 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 280-18 chr1 97034419 97034604 + 2 NA Intergenic Intergenic -61412 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 387-223 chr3 62754916 62755187 + 2 NA intron (NM_003716, intron 2 of 29) intron (NM_003716, intron 2 of 29) 120365 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 589-163 chr8 143618433 143618981 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -1158 NM_001317783 7264 Hs.404119 NM_003313 ENSG00000104522 TSTA3 FX|P35B|SDR4E1 tissue specific transplantation antigen P35B protein-coding 443-113 chr16 5692939 5693354 + 2 NA Intergenic Intergenic 60679 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 280-255 chr3 44736694 44736940 + 2 NA 3' UTR (NM_001258280, exon 3 of 3) 3' UTR (NM_001258280, exon 3 of 3) 7182 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 266-406 chr8 26414315 26414529 + 2 NA Intergenic Intergenic 24009 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 226-289 chr5 107782153 107782296 + 2 NA Intergenic L1M7|LINE|L1 -111287 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 442-69 chr13 114212158 114212591 + 2 NA Intergenic Intergenic -22471 NM_001330105 8881 Hs.374127 NM_003903 ENSG00000130177 CDC16 ANAPC6|APC6|CDC16Hs|CUT9 cell division cycle 16 protein-coding 187-190 chrX 37346511 37346638 + 2 NA Intergenic Intergenic -2756 NM_001173490 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 202-183 chr4 32011902 32012078 + 2 NA intron (NR_134682, intron 1 of 3) L1PA8A|LINE|L1 10432 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 616-128 chr5 9894765 9895256 + 2 NA intron (NR_027112, intron 2 of 12) intron (NR_027112, intron 2 of 12) 8814 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 354-395 chr6 47142292 47142562 + 2 NA Intergenic Intergenic -100095 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 196-189 chr4 78285156 78285278 + 2 NA intron (NM_001166133, intron 13 of 41) AluSx3|SINE|Alu -3768 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 417-110 chr17 70990310 70990677 + 2 NA Intergenic L1PB|LINE|L1 211686 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 204-142 chr2 75107000 75107147 + 2 NA intron (NM_015727, intron 2 of 3) L1MC4|LINE|L1 16261 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 406-210 chr4 87933254 87933577 + 2 NA Intergenic L1M3|LINE|L1 -42235 NM_000582 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 229-188 chr2 99630420 99630607 + 2 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -140496 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 839-49 chr8 78211117 78211827 + 2 NA Intergenic MIR|SINE|MIR -304868 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 352-102 chr12 43934497 43934716 + 2 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 98525 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 264-297 chr4 99287075 99287308 + 2 NA intron (NR_037884, intron 5 of 9) intron (NR_037884, intron 5 of 9) 3794 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 179-74 chr3 168172560 168172700 + 2 NA Intergenic L1MD2|LINE|L1 -76706 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 299-453 chr8 89502009 89502181 + 2 NA Intergenic L2c|LINE|L2 255616 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 581-5 chr1 111524782 111525208 + 2 NA intron (NM_001081976, intron 1 of 5) L1ME1|LINE|L1 -17014 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 400-351 chr8 123306727 123307004 + 2 NA Intergenic L1MB3|LINE|L1 -31324 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 189-191 chr7 83349812 83349961 + 2 NA Intergenic Intergenic -187002 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 344-68 chr10 128406290 128406575 + 2 NA Intergenic L1MEd|LINE|L1 120482 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 817-15 chr14 56829255 56829876 + 2 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 16407 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 246-249 chr3 16661984 16662218 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -56678 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 160-86 chr5 23530710 23530829 + 2 NA Intergenic L1MA5|LINE|L1 23114 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 320-96 chr11 95062529 95062806 + 2 NA Intergenic L1ME3Cz|LINE|L1 -4210 NM_032102 10929 Hs.476680 NM_032102 ENSG00000263465 SRSF8 DSM-1|SFRS2B|SRP46 serine and arginine rich splicing factor 8 protein-coding 279-32 chr10 42372280 42372465 + 2 NA Intergenic MER57A-int|LTR|ERV1 -4327 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 360-342 chr5 5968612 5968919 + 2 NA Intergenic Intergenic 368527 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 321-145 chr12 115531866 115532077 + 2 NA Intergenic Intergenic 616683 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 986-27 chr5 46226148 46226779 + 2 NA Intergenic ALR/Alpha|Satellite|centr -530083 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 475-150 chr2 164326132 164326522 + 2 NA Intergenic L1PA15-16|LINE|L1 242168 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 409-164 chr20 745297 745610 + 2 NA Intergenic L1M4b|LINE|L1 23047 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 300 chr1 3342894 3343048 + 2 NA intron (NM_022114, intron 3 of 16) L1ME2|LINE|L1 -111694 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 233-373 chr8 82504753 82504935 + 2 NA Intergenic Intergenic -407260 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 721-73 chr6 65064286 65064883 + 2 NA intron (NM_001292009, intron 12 of 43) (TA)n|Simple_repeat|Simple_repeat -236834 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 166-71 chr3 40586520 40586652 + 2 NA Intergenic Intergenic 61626 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 576-74 chr18 78368812 78369254 + 2 NA Intergenic Intergenic -375306 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 529-101 chr2 57239829 57240219 + 2 NA Intergenic L1MA8|LINE|L1 -667627 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 242-246 chr3 118352880 118353083 + 2 NA Intergenic Intergenic -288787 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 266-100 chr13 86501430 86501680 + 2 NA Intergenic Intergenic -410365 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 219-49 chr11 62168908 62169070 + 2 NA Intergenic L1MB3|LINE|L1 -21227 NM_006552 10648 Hs.202686 NM_006552 ENSG00000168515 SCGB1D1 LIPA|LPHA|LPNA secretoglobin family 1D member 1 protein-coding 520-69 chr12 59773330 59773778 + 2 NA intron (NR_073055, intron 5 of 6) intron (NR_073055, intron 5 of 6) 84184 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 469-133 chr2 80982628 80983091 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 484087 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 243-323 chr4 61380680 61380860 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 178598 NM_001371342 295-235 chr2 175078068 175078356 + 2 NA intron (NR_045770, intron 14 of 15) AluJo|SINE|Alu -72833 NR_038133 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 411-108 chr16 31912083 31912469 + 2 NA intron (NR_049749, intron 4 of 4) L1M1|LINE|L1 38469 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 309-26 chr1 205851858 205852124 + 2 NA Intergenic L1ME4a|LINE|L1 -1859 NR_135186 148811 Hs.177744 NM_152491 ENSG00000162877 PM20D1 Cps1 peptidase M20 domain containing 1 protein-coding 256-396 chr7 94737665 94737867 + 2 NA Intergenic LTR102_Mam|LTR|ERVL 81396 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 321-459 chr5 54512421 54512682 + 2 NA Intergenic MIRb|SINE|MIR -5208 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 338-87 chr10 118930328 118930513 + 2 NA Intergenic L1MD1|LINE|L1 -99294 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 242-32 chr10 26347884 26348071 + 2 NA Intergenic Intergenic -90364 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 701-34 chr17 65680962 65681462 + 2 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -119564 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 319-43 chr10 8171703 8172007 + 2 NA Intergenic Intergenic 96450 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 334-69 chr10 104154694 104154939 + 2 NA intron (NM_025145, intron 27 of 37) L2b|LINE|L2 32645 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 217-379 chr8 134631737 134631913 + 2 NA intron (NM_020863, intron 3 of 15) L1MD1|LINE|L1 33754 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 250-367 chr5 164815276 164815514 + 2 NA Intergenic MLT2B1|LTR|ERVL 345116 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 261-11 chr1 78470758 78470943 + 2 NA Intergenic Intergenic -20124 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 337-233 chr19 46472187 46472376 + 2 NA promoter-TSS (NM_001103149) promoter-TSS (NM_001103149) -718 NM_018215 55228 Hs.8395 NM_018215 ENSG00000182013 PNMA8A PNMAL1 PNMA family member 8A protein-coding 371-386 chr8 96475856 96476177 + 2 NA Intergenic AluJb|SINE|Alu -17797 NM_002998 6383 Hs.1501 NM_002998 ENSG00000169439 SDC2 CD362|HSPG|HSPG1|SYND2 syndecan 2 protein-coding 240-384 chr6 117109775 117109997 + 2 NA Intergenic L3|LINE|CR1 -155672 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 267-50 chr10 63950856 63951016 + 2 NA Intergenic L1ME3A|LINE|L1 -429046 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 152-56 chr2 193762350 193762476 + 2 NA Intergenic Intergenic -581856 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 406-90 chr14 88050750 88051129 + 2 NA intron (NR_046094, intron 2 of 3) L1MB8|LINE|L1 -24627 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 265-331 chr6 22409264 22409474 + 2 NA Intergenic Intergenic -106534 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 205-87 chr14 64156693 64156880 + 2 NA intron (NM_015180, intron 85 of 114) intron (NM_015180, intron 85 of 114) -57358 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 392-98 chr15 72876483 72876835 + 2 NA Intergenic MER51A|LTR|ERV1 -92901 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 389-366 chr8 115475304 115475609 + 2 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 192557 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 562-85 chr18 51012431 51012956 + 2 NA Intergenic Intergenic -17520 NM_005359 4089 Hs.75862 NM_005359 ENSG00000141646 SMAD4 DPC4|JIP|MADH4|MYHRS SMAD family member 4 protein-coding 316-508 chr7 31510209 31510460 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -3737 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 252-300 chr4 91520751 91520934 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 756460 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 222-193 chr2 173006840 173007008 + 2 NA intron (NM_001282901, intron 11 of 24) intron (NM_001282901, intron 11 of 24) -68922 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 520-263 chr6 137518963 137519340 + 2 NA Intergenic Intergenic -24757 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 205-170 chr21 45756495 45756691 + 2 NA intron (NM_001348243, intron 3 of 15) L1MB7|LINE|L1 8579 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 458-80 chr14 87385944 87386280 + 2 NA Intergenic AluSz|SINE|Alu 269182 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 247-309 chr4 160745988 160746183 + 2 NA Intergenic Intergenic -968301 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 556-197 chr6 142524918 142525367 + 2 NA Intergenic Intergenic 112694 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 144-10 chr1 213373659 213373794 + 2 NA Intergenic Intergenic 322485 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 389-269 chr4 106839032 106839386 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 197104 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 137-32 chr16 86325702 86325780 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 19938 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 524-112 chr2 56528731 56529137 + 2 NA Intergenic Intergenic -343164 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 281-279 chr3 24944015 24944179 + 2 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 114774 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 310-243 chr2 79507234 79507480 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -5577 NM_001164883 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 321-598 chr9 80056027 80056273 + 2 NA Intergenic L1MA9|LINE|L1 81127 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 329-197 chr16 6316290 6316611 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 296747 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 327-334 chr3 94845195 94845400 + 2 NA Intergenic L1M2|LINE|L1 -92966 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 347-157 chr15 86522087 86522314 + 2 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -205232 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 585-106 chr4 58326176 58326663 + 2 NA Intergenic Intergenic 209909 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 367-136 chr15 33481150 33481411 + 2 NA intron (NM_001243996, intron 2 of 102) L1MEf|LINE|L1 170313 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 252-96 chr12 96553144 96553344 + 2 NA intron (NM_001306084, intron 15 of 67) intron (NM_001306084, intron 15 of 67) 63667 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 367-210 chr2 102585464 102585753 + 2 NA Intergenic MamRep1151|LTR?|LTR? -33945 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 532-45 chr12 43534144 43534615 + 2 NA intron (NM_025003, intron 2 of 38) L1ME4b|LINE|L1 17824 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 244-195 chr20 19102160 19102392 + 2 NA Intergenic Intergenic -110366 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 498-257 chr7 105951234 105951563 + 2 NA Intergenic Intergenic -11866 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 359-351 chr4 36371516 36371748 + 2 NA Intergenic MER65-int|LTR|ERV1 54796 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 604-25 chr11 5021084 5021470 + 2 NA Intergenic L1M3a|LINE|L1 22294 NM_001004755 119682 Hs.553559 NM_001004755 ENSG00000176798 OR51L1 OR11-31 olfactory receptor family 51 subfamily L member 1 protein-coding 299-289 chr3 89738991 89739259 + 2 NA Intergenic Intergenic 631504 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 253-152 chr16 78430725 78430906 + 2 NA intron (NM_001291997, intron 6 of 7) intron (NM_001291997, intron 6 of 7) 331161 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 581-28 chr11 107623827 107624300 + 2 NA intron (NM_018712, intron 2 of 11) intron (NM_018712, intron 2 of 11) 32916 NM_018712 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 385-316 chr6 9698340 9698706 + 2 NA Intergenic Intergenic -705979 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 152-81 chr5 136656382 136656492 + 2 NA Intergenic L2a|LINE|L2 -290961 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 587-41 chr14 19893296 19893814 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 17287 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 279-321 chr5 42584484 42584650 + 2 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 18703 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 281-385 chr6 22212277 22212525 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -65208 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 484-275 chr8 132069502 132069907 + 2 NA intron (NM_001145095, intron 14 of 15) intron (NM_001145095, intron 14 of 15) -10322 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 355-410 chr5 118380323 118380530 + 2 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 97852 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 549-193 chr7 53092508 53092939 + 2 NA Intergenic Intergenic 57090 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 234-376 chr7 157505237 157505436 + 2 NA Intergenic L1MEf|LINE|L1 39105 NR_110157 101927914 Hs.623826 NR_110157 ENSG00000234210 LOC101927914 - uncharacterized LOC101927914 ncRNA 278-183 chr18 76469858 76470087 + 2 NA intron (NM_014643, intron 1 of 6) intron (NM_014643, intron 1 of 6) -21680 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 491-29 chr11 13050209 13050526 + 2 NA Intergenic L1MC4|LINE|L1 41051 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 574-59 chr18 7425850 7426351 + 2 NA Intergenic Intergenic 34906 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 330-436 chr5 122294432 122294714 + 2 NA Intergenic L1PA17|LINE|L1 -17118 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 405-270 chr6 18825507 18825897 + 2 NA Intergenic L3|LINE|CR1 253918 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 244-238 chr3 148124239 148124422 + 2 NA Intergenic AluJb|SINE|Alu 46171 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 408-331 chr8 43617390 43617656 + 2 NA Intergenic ALR/Alpha|Satellite|centr 325081 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 288-378 chr6 123221074 123221324 + 2 NA intron (NM_006073, intron 40 of 40) intron (NM_006073, intron 40 of 40) -218405 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 212-100 chr14 65504157 65504278 + 2 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 33115 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 307-241 chr2 95232601 95232806 + 2 NA Intergenic Intergenic -41746 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 202-69 chr14 47508148 47508288 + 2 NA intron (NM_001113498, intron 1 of 16) L3|LINE|CR1 -164972 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 534-77 chr14 72587948 72588382 + 2 NA Intergenic Intergenic 71345 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 305-99 chr11 82709297 82709514 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 24459 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 395-322 chr7 132893936 132894255 + 2 NA intron (NM_001317177, intron 4 of 8) intron (NM_001317177, intron 4 of 8) 135125 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 295-201 chr2 23296328 23296519 + 2 NA Intergenic Intergenic -88756 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 317-460 chr7 90038962 90039266 + 2 NA intron (NR_110029, intron 2 of 2) intron (NR_110029, intron 2 of 2) -80286 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 369-445 chr9 101785399 101785639 + 2 NA Intergenic Intergenic -46939 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 229-89 chr12 39844662 39844881 + 2 NA intron (NM_052885, intron 6 of 9) intron (NM_052885, intron 6 of 9) 218588 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 209-294 chr7 35380122 35380248 + 2 NA Intergenic L1M6|LINE|L1 66330 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 506-206 chr4 64128920 64129245 + 2 NA Intergenic Intergenic 280368 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 270-165 chr18 70904300 70904525 + 2 NA Intergenic Intergenic -253458 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 198-9 chr1 115345774 115345933 + 2 NA intron (NR_157569, intron 1 of 1) MSTB1|LTR|ERVL-MaLR -7617 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 200-48 chr11 47891160 47891318 + 2 NA Intergenic Intergenic -42695 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 228-339 chr8 90960491 90960631 + 2 NA intron (NM_001363275, intron 5 of 5) intron (NM_001363275, intron 5 of 5) 24516 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 273-247 chr2 213449551 213449815 + 2 NA intron (NR_047660, intron 8 of 14) L1PA16|LINE|L1 165219 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 401-116 chr16 12871314 12871555 + 2 NA Intergenic Intergenic -30164 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 307-120 chr13 61429127 61429359 + 2 NA Intergenic Intergenic -1297 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 250-304 chr4 41739470 41739672 + 2 NA Intergenic Intergenic 9399 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 239-129 chr17 52172327 52172505 + 2 NA Intergenic Intergenic -12399 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 326-85 chr10 120280529 120280780 + 2 NA Intergenic L1PA15|LINE|L1 74569 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 229-174 chr2 37986149 37986336 + 2 NA intron (NM_001170793, intron 4 of 9) intron (NM_001170793, intron 4 of 9) 35778 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 242-233 chr3 39009548 39009743 + 2 NA intron (NM_001349253, intron 2 of 29) HAL1|LINE|L1 42299 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 228-286 chr6 35942924 35943094 + 2 NA TTS (NM_138718) TTS (NM_138718) -21829 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 336-278 chr2 103173247 103173506 + 2 NA Intergenic Intergenic -188947 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 225-61 chr11 84295941 84296163 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) 21287 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 251-263 chr4 37570849 37571056 + 2 NA intron (NM_001104629, intron 2 of 3) intron (NM_001104629, intron 2 of 3) -13281 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 178-31 chr11 105690125 105690278 + 2 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 79495 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 307-44 chr10 28649116 28649271 + 2 NA Intergenic L1MA5A|LINE|L1 -28328 NM_012342 25805 Hs.533336 NM_012342 ENSG00000095739 BAMBI NMA BMP and activin membrane bound inhibitor protein-coding 306-486 chr7 125996102 125996359 + 2 NA Intergenic L1MA9|LINE|L1 -731939 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 272-493 chrX 134597637 134597794 + 2 NA intron (NM_001316889, intron 1 of 1) L1MDa|LINE|L1 47691 NR_038998 100506757 Hs.130961 NR_038998 LINC00629 LINC00629A|LINC00629B|LINC00629C|LINC00629D long intergenic non-protein coding RNA 629 ncRNA 352-340 chr3 175598221 175598499 + 2 NA intron (NM_207015, intron 10 of 13) intron (NM_207015, intron 10 of 13) 177973 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 561-93 chr2 25551062 25551550 + 2 NA intron (NM_033147, intron 8 of 19) L1MEi|LINE|L1 98916 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 234-231 chr3 28511480 28511628 + 2 NA intron (NM_001040432, intron 6 of 9) L1MEd|LINE|L1 -63724 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 456-130 chr18 2207417 2207698 + 2 NA Intergenic Intergenic 363948 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 186-76 chr2 52356699 52356848 + 2 NA intron (NR_135237, intron 10 of 10) intron (NR_135237, intron 10 of 10) -13875 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 444-32 chr10 125321697 125322060 + 2 NA Intergenic HAL1ME|LINE|L1 -160848 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 354-318 chr4 31206448 31206759 + 2 NA intron (NR_125935, intron 4 of 4) intron (NR_125935, intron 4 of 4) 35459 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 122-57 chr8 129709203 129709290 + 2 NA Intergenic Intergenic -29007 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 252-150 chr16 80306433 80306628 + 2 NA intron (NR_120307, intron 2 of 5) MER4D|LTR|ERV1 -234204 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 361-341 chr4 183794664 183794854 + 2 NA Intergenic Intergenic -3263 NR_132761 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 345-284 chr2 132726476 132726791 + 2 NA intron (NM_207481, intron 16 of 17) intron (NM_207481, intron 16 of 17) -55107 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 562-87 chr18 59165881 59166305 + 2 NA Intergenic AluSx|SINE|Alu 26209 NM_001307941 90701 Hs.45107 NM_033280 ENSG00000166562 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C, signal peptidase complex subunit protein-coding 241-317 chr5 163653395 163653587 + 2 NA Intergenic L1MA4|LINE|L1 147872 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 332-15 chr1 102193878 102194195 + 2 NA Intergenic Intergenic -196802 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 527-229 chr6 115421572 115422091 + 2 NA Intergenic Intergenic 222004 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 471-137 chr2 116196405 116196821 + 2 NA Intergenic L1M1|LINE|L1 852798 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 268-278 chr4 66681387 66681635 + 2 NA Intergenic LTR37B|LTR|ERV1 404687 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 479-151 chr3 197935254 197935624 + 2 NA intron (NM_001323030, intron 5 of 7) AluSx|SINE|Alu 14486 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 215-92 chr14 88959295 88959489 + 2 NA Intergenic Intergenic 134741 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 347-422 chr5 166120594 166120832 + 2 NA Intergenic Intergenic 805657 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 552-198 chr7 34186351 34186810 + 2 NA Intergenic Intergenic 281041 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 240-65 chr10 113671487 113671635 + 2 NA Intergenic Intergenic -7491 NM_006175 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 238-359 chr7 51049945 51050126 + 2 NA intron (NM_015198, intron 7 of 12) L4_C_Mam|LINE|RTE-X -256582 NM_001371008 280-449 chr9 122861820 122862031 + 2 NA intron (NM_001100588, intron 10 of 20) intron (NM_001100588, intron 10 of 20) 18394 NR_003071 692206 Hs.693253 NR_003071 ENSG00000212447 SNORD90 HBII-295 small nucleolar RNA, C/D box 90 snoRNA 315-331 chr4 30472313 30472614 + 2 NA Intergenic Intergenic -247906 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 199-103 chr2 24982245 24982412 + 2 NA intron (NR_034113, intron 1 of 2) L2b|LINE|L2 10216 NR_034113 729723 Hs.436366 NR_034113 ENSG00000224165 DNAJC27-AS1 - DNAJC27 antisense RNA 1 ncRNA 233-165 chr2 56225650 56225844 + 2 NA intron (NM_001348516, intron 2 of 2) L1MB8|LINE|L1 -39977 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 655-56 chr2 74786631 74787058 + 2 NA Intergenic L1PA16|LINE|L1 -45811 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 125-30 chr20 10767447 10767552 + 2 NA Intergenic Intergenic 14409 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 371-48 chr10 57759467 57759776 + 2 NA Intergenic L1PA15|LINE|L1 -455062 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 433-212 chr4 163008461 163008788 + 2 NA Intergenic Intergenic 85004 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 330-179 chr15 97869756 97870023 + 2 NA intron (NR_024172, intron 1 of 2) AluJo|SINE|Alu 4540 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 348-518 chr8 74100334 74100516 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 109033 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 468-132 chr19 57653600 57654026 + 2 NA Intergenic LTR46-int|LTR|ERV1 -15122 NM_152677 201516 Hs.469663 NM_152677 ENSG00000180532 ZSCAN4 ZNF494 zinc finger and SCAN domain containing 4 protein-coding 352-280 chr20 40863144 40863453 + 2 NA Intergenic Intergenic -117415 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 394-34 chr10 23267253 23267539 + 2 NA intron (NM_001365862, intron 8 of 15) intron (NM_001365862, intron 8 of 15) 75084 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 475-184 chr3 86260173 86260498 + 2 NA Intergenic Intergenic -221608 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 285-184 chr2 5383279 5383512 + 2 NA Intergenic L1MEi|LINE|L1 307723 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 206-182 chr4 72502489 72502625 + 2 NA intron (NM_014243, intron 3 of 21) L1PA15-16|LINE|L1 66664 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 341-480 chr6 164902103 164902343 + 2 NA Intergenic Intergenic -80160 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 279-296 chr4 78946711 78946953 + 2 NA Intergenic L1PA16|LINE|L1 -7394 NR_146464 152559 Hs.657312 NM_177453 ENSG00000163291 PAQR3 RKTG progestin and adipoQ receptor family member 3 protein-coding 549-38 chr11 79386371 79386865 + 2 NA intron (NM_001098816, intron 1 of 33) L1ME3A|LINE|L1 15491 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 260-178 chr18 4212021 4212165 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -52509 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 349-162 chr14 62302937 62303191 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -163091 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 513-159 chr20 10937970 10938375 + 2 NA Intergenic Intergenic -28900 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 306 chr1 14501842 14502052 + 2 NA Intergenic L1MB7|LINE|L1 -81974 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 333-41 chr1 202985805 202985985 + 2 NA TTS (NR_036557) TTS (NR_036557) -18638 NM_016243 51706 Hs.334832 NM_016243 ENSG00000159348 CYB5R1 B5R.1|B5R1|B5R2|NQO3A2|humb5R2 cytochrome b5 reductase 1 protein-coding 242-378 chr7 103444882 103445060 + 2 NA promoter-TSS (NR_110141) promoter-TSS (NR_110141) -236 NR_110141 101927870 Hs.736927 NR_110141 ENSG00000234715 LOC101927870 - uncharacterized LOC101927870 ncRNA 356-472 chr8 63578699 63579019 + 2 NA Intergenic Intergenic 113010 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 544-231 chr8 126998141 126998497 + 2 NA Intergenic Intergenic -14835 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 133-49 chr3 103666888 103666966 + 2 NA Intergenic Intergenic -142811 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 443-129 chr18 37760894 37761304 + 2 NA Intergenic Intergenic 103964 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 313-61 chr10 109802640 109802825 + 2 NA Intergenic L1PA15|LINE|L1 120514 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 237-342 chr7 11005303 11005534 + 2 NA intron (NR_033436, intron 3 of 16) L1MC4|LINE|L1 31546 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 269-342 chr6 51701021 51701259 + 2 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 79270 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 190-157 chr6 115051954 115052077 + 2 NA Intergenic Intergenic 591820 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 472-277 chr6 100465815 100466129 + 2 NA Intergenic Intergenic -2297 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 702-62 chr3 78745986 78746519 + 2 NA intron (NM_002941, intron 5 of 30) intron (NM_002941, intron 5 of 30) 273207 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 553-28 chr11 37613567 37614117 + 2 NA Intergenic Intergenic -324759 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 159-6 chr1 118246388 118246531 + 2 NA Intergenic Intergenic -61231 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 221-122 chr18 29373396 29373567 + 2 NA Intergenic L1ME3A|LINE|L1 -925429 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 174-20 chr11 23109703 23109832 + 2 NA Intergenic L1M5|LINE|L1 -249293 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 304-464 chr6 77932597 77932788 + 2 NA Intergenic MIR|SINE|MIR 279653 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 541-122 chr2 102550588 102551003 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -68758 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 174-13 chr10 28503036 28503130 + 2 NA Intergenic Intergenic -7270 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 271-410 chr7 83854446 83854652 + 2 NA Intergenic Intergenic -205410 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 207-260 chr6 103605191 103605350 + 2 NA Intergenic L1PA10|LINE|L1 1254276 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 247-37 chr10 31738455 31738641 + 2 NA Intergenic Intergenic 170378 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 340-334 chr21 28486660 28486908 + 2 NA Intergenic MIR3|SINE|MIR -52534 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 538-182 chr4 106481012 106481518 + 2 NA Intergenic Intergenic 47641 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 303-76 chr11 109293106 109293404 + 2 NA Intergenic L1MA4A|LINE|L1 -128935 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 331-457 chr6 61593000 61593292 + 2 NA intron (NR_146870, intron 14 of 15) LTR49-int|LTR|ERV1 19016 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 321 chr1 12089216 12089495 + 2 NA intron (NM_001243, intron 2 of 14) intron (NM_001243, intron 2 of 14) 25978 NM_001281430 943 Hs.1314 NM_001243 ENSG00000120949 TNFRSF8 CD30|D1S166E|Ki-1 TNF receptor superfamily member 8 protein-coding 321-97 chr11 38310676 38310890 + 2 NA Intergenic Intergenic 335573 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 236-200 chr20 6169206 6169380 + 2 NA Intergenic LTR41|LTR|ERVL -45749 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 264-386 chr7 48792482 48792728 + 2 NA Intergenic Intergenic -131942 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 320-450 chr5 96581369 96581592 + 2 NA intron (NR_130776, intron 4 of 4) L1ME3G|LINE|L1 -80557 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 304-307 chr21 18740382 18740615 + 2 NA intron (NR_109925, intron 1 of 3) intron (NR_109925, intron 1 of 3) 19314 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 431-168 chr22 27737522 27737906 + 2 NA Intergenic L1ME2|LINE|L1 64042 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 508-61 chr14 66139459 66139866 + 2 NA Intergenic L2|LINE|L2 -346709 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 399-323 chr9 32062944 32063183 + 2 NA Intergenic L1PB3|LINE|L1 -321540 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 241-98 chr13 85407221 85407404 + 2 NA intron (NR_046989, intron 1 of 3) intron (NR_046989, intron 1 of 3) 43709 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 344-493 chr8 108823987 108824187 + 2 NA Intergenic Intergenic -36493 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 608-82 chr20 19301681 19302122 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -17305 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 368-364 chr5 86245650 86245976 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -36631 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 233-253 chr4 30738825 30739032 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 18559 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 417-53 chr11 107200324 107200651 + 2 NA Intergenic Intergenic -182011 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 400-172 chr2 125629810 125630158 + 2 NA Intergenic Intergenic 488001 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 777-48 chr4 19635203 19635752 + 2 NA Intergenic L3b|LINE|CR1 -616428 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 195-198 chr5 89729555 89729692 + 2 NA Intergenic Intergenic 287097 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 303-378 chr5 144364750 144364969 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 159468 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 703-79 chr6 64060605 64061150 + 2 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 254041 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 196-98 chr17 21066138 21066303 + 2 NA Intergenic Intergenic -9336 NR_110895 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 292-126 chr13 85339208 85339483 + 2 NA Intergenic L1MEd|LINE|L1 -24258 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 119-45 chr3 67450592 67450693 + 2 NA intron (NM_001177599, intron 9 of 10) L1ME2z|LINE|L1 203972 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 665-73 chr5 20029552 20030010 + 2 NA intron (NM_001291956, intron 2 of 14) MLT1E3|LTR|ERVL-MaLR -41581 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 263-86 chr12 69793905 69794161 + 2 NA intron (NR_103519, intron 4 of 8) intron (NR_103519, intron 4 of 8) 15081 NM_001024647 117177 Hs.258209 NM_022456 ENSG00000127328 RAB3IP RABIN3|RABIN8 RAB3A interacting protein protein-coding 462-53 chr11 114632944 114633349 + 2 NA Intergenic (ATAAT)n|Simple_repeat|Simple_repeat -37360 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 279-413 chr8 57439972 57440138 + 2 NA Intergenic Intergenic 96268 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 348-88 chr11 84017968 84018238 + 2 NA intron (NM_001142699, intron 11 of 27) L1M4a1|LINE|L1 255177 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 665-59 chr3 2565007 2565518 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 326433 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 503-102 chr14 78365476 78365831 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -38066 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 430-258 chr6 37250729 37251117 + 2 NA intron (NM_145316, intron 1 of 3) MLT1A0|LTR|ERVL-MaLR 6676 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 176-105 chr5 41656082 41656216 + 2 NA Intergenic L1ME4a|LINE|L1 -145548 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 300-332 chr4 91504206 91504442 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 772978 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 335-416 chr5 24674467 24674667 + 2 NA Intergenic AluSz|SINE|Alu -29589 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 157-12 chr1 193584826 193584955 + 2 NA Intergenic Intergenic 280145 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 402-202 chr3 3543216 3543441 + 2 NA Intergenic Intergenic -256103 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 502-47 chr11 35050590 35050987 + 2 NA Intergenic Intergenic 87244 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 323-340 chr3 109737085 109737398 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 134413 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 356-50 chr10 54653083 54653289 + 2 NA intron (NR_134503, intron 4 of 5) intron (NR_134503, intron 4 of 5) -45229 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 204-136 chr2 34292628 34292791 + 2 NA intron (NR_126403, intron 5 of 5) L1MEg|LINE|L1 225483 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 227-238 chr3 150157627 150157786 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 61263 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 226-68 chr12 17851427 17851624 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 178226 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 338-273 chr2 133279118 133279354 + 2 NA intron (NR_110294, intron 4 of 4) intron (NR_110294, intron 4 of 4) 13041 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 565-144 chr5 81587873 81588264 + 2 NA intron (NM_012446, intron 4 of 16) AluJr|SINE|Alu 163185 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 328-56 chr10 94954790 94954987 + 2 NA intron (NM_000771, intron 5 of 8) intron (NM_000771, intron 5 of 8) 16230 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 339-410 chr4 69556014 69556207 + 2 NA Intergenic Intergenic -30096 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 445-196 chr4 52864034 52864389 + 2 NA intron (NM_023940, intron 2 of 3) intron (NM_023940, intron 2 of 3) 1894 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 123-38 chr4 79082346 79082425 + 2 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 110637 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 725-17 chr11 84745311 84745773 + 2 NA intron (NM_001351274, intron 5 of 26) MSTA|LTR|ERVL-MaLR -24600 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 285-110 chr14 34943669 34943931 + 2 NA intron (NR_151701, intron 2 of 4) L1MEc|LINE|L1 3878 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 167-63 chr2 162148906 162149003 + 2 NA intron (NM_002054, intron 2 of 5) intron (NM_002054, intron 2 of 5) 3293 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 214-9 chr1 50394504 50394707 + 2 NA Intergenic L1ME1|LINE|L1 28838 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 379-29 chr1 214088227 214088534 + 2 NA Intergenic AluSx1|SINE|Alu 99847 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 207-70 chr12 129690288 129690437 + 2 NA intron (NM_133448, intron 2 of 8) L1MCa|LINE|L1 213663 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 285-338 chr5 59089156 59089358 + 2 NA intron (NM_006203, intron 5 of 14) intron (NM_006203, intron 5 of 14) -49781 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 508-30 chr10 83443004 83443362 + 2 NA Intergenic LTR49-int|LTR|ERV1 233906 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 260-22 chr1 160500041 160500217 + 2 NA intron (NM_001184714, intron 1 of 7) L1ME3A|LINE|L1 23126 NM_001184715 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 400-134 chr17 72694018 72694316 + 2 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -53695 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 301-162 chr17 55808815 55809027 + 2 NA intron (NM_001330378, intron 5 of 5) intron (NM_001330378, intron 5 of 5) 57816 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 261-230 chr22 33223523 33223726 + 2 NA Intergenic Intergenic 115095 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 283-326 chr4 66909731 66910006 + 2 NA Intergenic L1ME1|LINE|L1 512132 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 562-141 chr3 48390787 48391302 + 2 NA intron (NM_207102, intron 10 of 10) AluJo|SINE|Alu 18825 NM_001159929 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 378-433 chr8 68681331 68681695 + 2 NA intron (NR_146187, intron 8 of 13) L1MA3|LINE|L1 -350022 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 641-117 chr9 80288577 80289079 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 313805 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 296-392 chr5 179100557 179100722 + 2 NA Intergenic L1M4|LINE|L1 40266 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 333-527 chr7 14400984 14401269 + 2 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) -409701 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 271-244 chr21 32187695 32187848 + 2 NA Intergenic LTR40b|LTR|ERVL 91278 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 192-157 chr5 27019255 27019390 + 2 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 19264 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 400-60 chr11 110053232 110053479 + 2 NA Intergenic L1M2|LINE|L1 -40037 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 361-430 chr8 25927022 25927328 + 2 NA intron (NM_022659, intron 6 of 15) MLT2C1|LTR|ERVL 118238 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 257-286 chr4 19901183 19901365 + 2 NA Intergenic Intergenic -350631 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 302-70 chr11 27278187 27278418 + 2 NA Intergenic L1MC5|LINE|L1 -58189 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 157-138 chr9 33032690 33032811 + 2 NA intron (NM_001539, intron 5 of 8) L1MC5|LINE|L1 7477 NM_001539 3301 Hs.445203 NM_001539 ENSG00000086061 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ heat shock protein family (Hsp40) member A1 protein-coding 168-30 chr14 57572047 57572162 + 2 NA intron (NM_001306087, intron 4 of 7) intron (NM_001306087, intron 4 of 7) -78247 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 347-283 chr21 27010459 27010764 + 2 NA Intergenic Intergenic -43523 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 223-145 chr2 21347931 21348141 + 2 NA Intergenic Intergenic 224050 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 374-224 chr20 52645602 52645922 + 2 NA intron (NR_110038, intron 2 of 2) MIRb|SINE|MIR 24924 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 327-142 chr14 29518933 29519252 + 2 NA Intergenic Intergenic 408004 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 292-302 chr3 194892127 194892324 + 2 NA Intergenic HAL1|LINE|L1 -123516 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 317-349 chr4 57822595 57822831 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 396841 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 348-369 chr4 91709933 91710160 + 2 NA Intergenic L1M3b|LINE|L1 567256 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 319-471 chr6 114753555 114753844 + 2 NA Intergenic Intergenic -690822 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 199-16 chr1 228964089 228964269 + 2 NA Intergenic Intergenic 210622 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 276-277 chr3 2305053 2305254 + 2 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 66324 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 315-418 chr6 54427133 54427397 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 118824 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 239-145 chr18 29767691 29767869 + 2 NA Intergenic Intergenic -531130 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 385-106 chr14 101094316 101094696 + 2 NA Intergenic AluSz6|SINE|Alu 24595 NR_047664 100507257 Hs.301755 NR_047664 ENSG00000223403 MEG9 LINC00584 maternally expressed 9 ncRNA 254-293 chr5 7950153 7950400 + 2 NA Intergenic Intergenic 81128 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 318-536 chr8 68682952 68683255 + 2 NA intron (NR_146187, intron 8 of 13) intron (NR_146187, intron 8 of 13) -351612 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 360-453 chr8 52228156 52228337 + 2 NA TTS (NR_148196) TTS (NR_148196) 20398 NR_148196 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 341-556 chr8 144593032 144593244 + 2 NA intron (NM_025251, intron 1 of 10) intron (NM_025251, intron 1 of 10) 12557 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 624-120 chr8 118818528 118819003 + 2 NA Intergenic L1ME3G|LINE|L1 133120 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 372-424 chr6 12943373 12943678 + 2 NA intron (NM_001322308, intron 3 of 13) L1MB5|LINE|L1 -13831 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 377-343 chr6 28198138 28198392 + 2 NA Intergenic Intergenic 20664 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 279-247 chr3 19913711 19913879 + 2 NA intron (NM_001330688, intron 7 of 14) L1M1|LINE|L1 20422 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 177-76 chr2 118018991 118019115 + 2 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat -4983 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 340-401 chr4 61664224 61664498 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 462189 NM_001371342 242-426 chr9 18939002 18939199 + 2 NA intron (NM_001287050, intron 2 of 2) intron (NM_001287050, intron 2 of 2) 94109 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 492-83 chr14 40685547 40685942 + 2 NA Intergenic L1M5|LINE|L1 -268967 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 408-178 chr2 213001055 213001366 + 2 NA 3' UTR (NM_016260, exon 8 of 8) 3' UTR (NM_016260, exon 8 of 8) -74874 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 280-233 chr20 47883706 47883917 + 2 NA Intergenic MIR|SINE|MIR -97195 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 792-42 chr4 65294943 65295539 + 2 NA Intergenic Intergenic -290741 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 297-151 chr15 86764399 86764571 + 2 NA intron (NM_152336, intron 23 of 24) L1ME3Cz|LINE|L1 -168395 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 298-184 chr19 11669379 11669538 + 2 NA Intergenic L1ME1|LINE|L1 -2369 NR_002944 664709 Hs.534822 NR_002944 HNRNPA1P10 HNRPA1L-2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo 358-8 chr1 73085850 73086048 + 2 NA Intergenic Intergenic -220221 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 345-351 chr3 70803421 70803721 + 2 NA Intergenic Intergenic 261353 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 391-329 chr7 53772167 53772458 + 2 NA intron (NR_038371, intron 2 of 5) (ATATAT)n|Simple_repeat|Simple_repeat 39619 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 224-26 chr1 241255699 241255916 + 2 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 100019 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 246-79 chr11 120724947 120725139 + 2 NA intron (NM_001282470, intron 2 of 19) MER20B|DNA|hAT-Charlie 94072 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 329-605 chr9 34923160 34923358 + 2 NA Intergenic L1MA3|LINE|L1 -27495 NM_001309426 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 221-258 chr5 178983476 178983695 + 2 NA intron (NM_000843, intron 9 of 10) intron (NM_000843, intron 9 of 10) 11735 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 766-73 chr8 139768032 139768628 + 2 NA intron (NM_001160372, intron 21 of 22) L2a|LINE|L2 -65207 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 287-62 chr10 76801173 76801360 + 2 NA Intergenic Intergenic -86778 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 339-65 chr10 63471327 63471614 + 2 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -5493 NM_032776 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 616-4 chr1 96111248 96111696 + 2 NA Intergenic AluJb|SINE|Alu 119404 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 361-8 chr1 78822945 78823129 + 2 NA Intergenic Intergenic 173206 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 508-28 chr10 61295474 61295870 + 2 NA Intergenic Intergenic -156967 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 284-431 chr9 25443229 25443491 + 2 NA Intergenic Intergenic 235498 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 389-196 chr2 220974696 220974940 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 597486 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 253-154 chr17 13105436 13105646 + 2 NA Intergenic AluSx|SINE|Alu -87477 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 237-84 chr12 110888333 110888528 + 2 NA intron (NM_152591, intron 8 of 11) intron (NM_152591, intron 8 of 11) 32170 NM_000432 4633 Hs.75535 NM_000432 ENSG00000111245 MYL2 CMH10|MLC-2s/v|MLC2 myosin light chain 2 protein-coding 319-481 chr6 158987280 158987535 + 2 NA intron (NR_144434, intron 2 of 8) L1M3f|LINE|L1 12780 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 176-22 chr12 101005739 101005841 + 2 NA intron (NM_001286616, intron 7 of 26) intron (NM_001286616, intron 7 of 26) 104144 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 302-484 chr9 29798889 29799080 + 2 NA Intergenic Intergenic -585383 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 293-108 chr13 100867964 100868205 + 2 NA intron (NR_047687, intron 2 of 7) L1MA9|LINE|L1 76280 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 372-24 chr1 164184461 164184735 + 2 NA Intergenic L1ME3Cz|LINE|L1 -374762 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 465-40 chr10 123712445 123712805 + 2 NA Intergenic L2b|LINE|L2 46270 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 481-268 chr6 146128075 146128439 + 2 NA intron (NM_001278065, intron 2 of 9) MLT1G1|LTR|ERVL-MaLR 99059 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 290-318 chr4 79184377 79184552 + 2 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 141597 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 290-210 chr2 76145640 76145898 + 2 NA Intergenic L2|LINE|L2 -434854 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 589-90 chr3 87950334 87950729 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -32045 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 555-129 chr3 94996720 94997216 + 2 NA Intergenic Intergenic 58705 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 335-56 chr10 60451114 60451394 + 2 NA intron (NM_001204403, intron 2 of 43) MLT1C|LTR|ERVL-MaLR -61379 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 1186-2 chr10 109292883 109293714 + 2 NA Intergenic L2c|LINE|L2 629948 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 369-274 chr3 126674305 126674563 + 2 NA Intergenic L1M5|LINE|L1 12353 NR_034158 255330 Hs.145435 NM_174935 ENSG00000198284 NUP210P1 C3orf46 nucleoporin 210 pseudogene 1 pseudo 168-44 chr18 43470681 43470782 + 2 NA Intergenic Intergenic -193241 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 338-144 chr12 132193611 132193906 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -4063 NR_146452 100996246 NR_146452 ENSG00000256576 LINC02361 - long intergenic non-protein coding RNA 2361 ncRNA 250-94 chr12 78823390 78823586 + 2 NA Intergenic Intergenic -40494 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 381-258 chr3 122602453 122602736 + 2 NA intron (NM_001113523, intron 1 of 11) intron (NM_001113523, intron 1 of 11) -13021 NM_001308321 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 680-79 chr3 5317111 5317626 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -67113 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 271-432 chr8 66068299 66068457 + 2 NA intron (NR_146171, intron 4 of 6) L1MEg|LINE|L1 46825 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 219-99 chr14 53111889 53112072 + 2 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 41343 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 507-166 chr3 118336124 118336621 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -305396 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 342-565 chrX 31076602 31076908 + 2 NA Intergenic Intergenic -4714 NM_031894 53940 Hs.333125 NM_031894 ENSG00000132446 FTHL17 CT38 ferritin heavy chain like 17 protein-coding 277-112 chr14 43821438 43821672 + 2 NA Intergenic Intergenic 685728 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 217-139 chr16 23986612 23986774 + 2 NA intron (NM_002738, intron 2 of 16) intron (NM_002738, intron 2 of 16) 150710 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 545-45 chr11 97396143 97396543 + 2 NA Intergenic L1MA2|LINE|L1 887918 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 262-32 chr1 237583869 237584050 + 2 NA intron (NM_001035, intron 29 of 104) intron (NM_001035, intron 29 of 104) 112840 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 396-286 chr5 92807081 92807415 + 2 NA Intergenic Intergenic 764095 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 409-109 chr17 54123075 54123405 + 2 NA Intergenic Intergenic 300313 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 462-273 chr7 136716395 136716685 + 2 NA Intergenic Intergenic -152112 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 319-445 chr6 13111363 13111618 + 2 NA intron (NM_001322308, intron 4 of 13) HAL1|LINE|L1 97936 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 293-417 chr7 134727232 134727516 + 2 NA Intergenic Intergenic -52260 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 375-385 chr7 73356270 73356621 + 2 NA intron (NM_001362789, intron 7 of 7) L1ME3Cz|LINE|L1 28284 NM_003602 8468 Hs.661266 NM_003602 ENSG00000077800 FKBP6 FKBP36 FKBP prolyl isomerase 6 protein-coding 133-30 chr18 75732233 75732314 + 2 NA Intergenic L1MEc|LINE|L1 -19870 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 369-86 chr12 64091990 64092291 + 2 NA intron (NM_001346201, intron 12 of 21) intron (NM_001346201, intron 12 of 21) 130156 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 163-87 chr3 140869653 140869786 + 2 NA Intergenic L1MA3|LINE|L1 -72117 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 344-501 chr8 126004501 126004692 + 2 NA Intergenic Intergenic -53399 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 488-232 chr6 43998550 43998974 + 2 NA intron (NR_125864, intron 4 of 4) LTR12C|LTR|ERV1 -1823 NR_160955 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 182-43 chr12 129100638 129100791 + 2 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) -8976 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 289-182 chr18 2470784 2471060 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 100583 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 404-41 chr10 62892127 62892382 + 2 NA Intergenic Intergenic -73087 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 464-240 chr7 37112660 37113027 + 2 NA intron (NM_001206480, intron 14 of 21) intron (NM_001206480, intron 14 of 21) 115047 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 466-236 chr6 156514573 156514864 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 135968 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 334-108 chr12 43446099 43446394 + 2 NA intron (NM_025003, intron 15 of 38) intron (NM_025003, intron 15 of 38) 105957 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 443-5 chr1 57547932 57548278 + 2 NA intron (NM_001353980, intron 4 of 5) L2a|LINE|L2 -123184 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 568-37 chr12 76493874 76494424 + 2 NA intron (NM_001003712, intron 1 of 22) L1M2|LINE|L1 65622 NM_020841 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 316-37 chr1 206128364 206128545 + 2 NA Intergenic Intergenic -11066 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 308-24 chr1 113522431 113522720 + 2 NA intron (NM_001142782, intron 1 of 20) MIR|SINE|MIR 132060 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 477-116 chr17 54215240 54215608 + 2 NA Intergenic Intergenic 392497 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 533-205 chr6 153258486 153258871 + 2 NA Intergenic L1MCa|LINE|L1 -127396 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 443-148 chr2 76015761 76016168 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -305049 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 253-357 chr6 67865308 67865503 + 2 NA Intergenic Intergenic -189946 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 179-109 chr7 50240221 50240389 + 2 NA Intergenic L1PB2|LINE|L1 -63759 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 354-291 chr3 43519442 43519677 + 2 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) 102367 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 243-223 chr2 114071152 114071333 + 2 NA Intergenic Intergenic -91258 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 187-20 chr10 38514442 38514574 + 2 NA Intergenic Intergenic 86362 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 186-105 chr3 22407160 22407331 + 2 NA Intergenic Intergenic 450106 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 273-423 chr7 50543466 50543671 + 2 NA TTS (NR_033845) TTS (NR_033845) 11809 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 214-275 chr6 44563538 44563689 + 2 NA Intergenic Intergenic -11732 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 221-50 chr11 63166478 63166629 + 2 NA intron (NM_199352, intron 6 of 8) intron (NM_199352, intron 6 of 8) -22332 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 272-318 chr4 122048884 122049125 + 2 NA Intergenic AluJo|SINE|Alu -96944 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 357-358 chr5 121551573 121551775 + 2 NA Intergenic L1MD1|LINE|L1 229124 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 317-354 chr4 67172708 67172930 + 2 NA Intergenic Intergenic 249181 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 313-202 chr17 53865361 53865652 + 2 NA Intergenic L1PB4|LINE|L1 42579 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 602-32 chr14 66660995 66661448 + 2 NA intron (NM_001024218, intron 1 of 21) L1PA12|LINE|L1 153814 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 367-229 chr2 173423671 173424006 + 2 NA Intergenic AluSc5|SINE|Alu 68966 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 372-26 chr1 181613150 181613463 + 2 NA intron (NM_001205293, intron 6 of 47) Tigger2a|DNA|TcMar-Tigger 129789 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 158-39 chr18 485760 485873 + 2 NA intron (NM_130386, intron 1 of 9) intron (NM_130386, intron 1 of 9) 14885 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 239-24 chr10 17415677 17415799 + 2 NA intron (NM_001004470, intron 2 of 7) intron (NM_001004470, intron 2 of 7) 28802 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 514-57 chr12 27212328 27212826 + 2 NA Intergenic AluJo|SINE|Alu -31709 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 374-64 chr12 16487395 16487611 + 2 NA Intergenic L1ME3G|LINE|L1 117876 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 361-441 chr8 70519746 70520055 + 2 NA Intergenic L1MB8|LINE|L1 48766 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 169-85 chr4 33701914 33702040 + 2 NA Intergenic L1MB1|LINE|L1 337916 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 429-114 chr16 73853372 73853737 + 2 NA Intergenic L1PB4|LINE|L1 361967 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 343-388 chr4 60417375 60417553 + 2 NA Intergenic L1PA7|LINE|L1 -505155 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 290-344 chr5 63443604 63443846 + 2 NA Intergenic AluSx|SINE|Alu 518567 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 397-254 chr5 46233535 46233859 + 2 NA Intergenic ALR/Alpha|Satellite|centr -537317 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 808-25 chr2 42223420 42223837 + 2 NA intron (NM_001145076, intron 1 of 21) intron (NM_001145076, intron 1 of 21) -53397 NR_110584 102723824 Hs.639826 NR_110584 LOC102723824 - uncharacterized LOC102723824 ncRNA 307-167 chr15 96814843 96815013 + 2 NA Intergenic HAL1b|LINE|L1 31493 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 317-163 chr15 46045182 46045341 + 2 NA Intergenic Intergenic 340066 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 302-180 chr18 4658682 4658847 + 2 NA Intergenic L1MB7|LINE|L1 -203457 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 237-246 chr3 94301762 94301968 + 2 NA Intergenic Intergenic 238804 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 174-126 chr6 65031426 65031533 + 2 NA intron (NM_001292009, intron 13 of 43) L1PA15|LINE|L1 -269939 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 465-63 chr12 42978230 42978628 + 2 NA Intergenic Intergenic -176886 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 335-427 chr5 65298610 65298901 + 2 NA intron (NR_135689, intron 10 of 25) intron (NR_135689, intron 10 of 25) 183165 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 295-429 chr7 10000191 10000363 + 2 NA Intergenic L2|LINE|L2 366007 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 446-333 chrX 66253464 66253895 + 2 NA intron (NR_159801, intron 16 of 21) L1MB8|LINE|L1 85929 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 255-270 chr3 133169953 133170198 + 2 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 45254 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 281-138 chr15 91673318 91673550 + 2 NA Intergenic Intergenic -180274 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 390-61 chr11 80494060 80494337 + 2 NA Intergenic L1MA6|LINE|L1 268605 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 487-81 chr14 36345127 36345518 + 2 NA Intergenic Intergenic -24646 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 352-116 chr12 117013436 117013636 + 2 NA intron (NM_153348, intron 8 of 10) intron (NM_153348, intron 8 of 10) -26199 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 387-300 chr5 152982410 152982615 + 2 NA Intergenic MER34A|LTR|ERV1 -10163 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 328-422 chr4 155369387 155369677 + 2 NA intron (NM_001039580, intron 4 of 13) intron (NM_001039580, intron 4 of 13) 7433 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 316-45 chr1 227676376 227676640 + 2 NA intron (NR_102302, intron 5 of 5) intron (NR_102302, intron 5 of 5) 21199 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 227-149 chr18 75583684 75583854 + 2 NA Intergenic Intergenic 128634 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 322-201 chr17 54037953 54038134 + 2 NA Intergenic Intergenic 215116 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 391-293 chr5 121242856 121243139 + 2 NA Intergenic L1MA9|LINE|L1 -79553 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 383-263 chr3 174062634 174062898 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -141970 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 340-214 chr18 40914758 40914991 + 2 NA Intergenic Intergenic 605803 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 296-26 chr1 238217501 238217782 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 268376 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 253-285 chr4 30463486 30463658 + 2 NA Intergenic Intergenic -256797 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 407-223 chr4 70252008 70252331 + 2 NA TTS (NM_005212) TTS (NM_005212) 9553 NM_005212 1448 Hs.54415 NM_005212 ENSG00000171209 CSN3 CNS10|CSN10|CSNK|KCA casein kappa protein-coding 368-272 chr21 28606713 28607036 + 2 NA Intergenic Intergenic 67556 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 313-360 chr3 128541020 128541192 + 2 NA Intergenic Intergenic 33271 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 147-78 chr6 161554536 161554647 + 2 NA intron (NM_004562, intron 8 of 11) L1MC5a|LINE|L1 83614 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 466-73 chr13 80320477 80320804 + 2 NA Intergenic AluSq|SINE|Alu 19019 NM_001318537 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 361-308 chr3 161901180 161901534 + 2 NA Intergenic Intergenic 404549 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 324-448 chr6 880876 881142 + 2 NA Intergenic Intergenic 12511 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 286-157 chr17 52368488 52368667 + 2 NA Intergenic Intergenic -21945 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 486-27 chr10 32428069 32428418 + 2 NA Intergenic Intergenic 17813 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 322-343 chr3 117308460 117308687 + 2 NA Intergenic Intergenic 382352 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 292-223 chr2 115413768 115413976 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 70057 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 209-165 chr2 213864547 213864710 + 2 NA intron (NR_047660, intron 10 of 14) (TTTTC)n|Simple_repeat|Simple_repeat 106561 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 121-49 chr5 13077983 13078060 + 2 NA Intergenic Intergenic -45135 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 186-17 chr10 113398533 113398629 + 2 NA Intergenic Intergenic -152250 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 396-277 chr5 38290493 38290750 + 2 NA non-coding (NR_046219, exon 1 of 4) non-coding (NR_046219, exon 1 of 4) 365 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 332-96 chr11 82443731 82443934 + 2 NA Intergenic Intergenic -39919 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 307-495 chr8 132500545 132500745 + 2 NA Intergenic Intergenic -19550 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 320-387 chr4 58991114 58991391 + 2 NA intron (NR_133941, intron 1 of 2) L1PREC2|LINE|L1 -3098 NR_133940 105377245 Hs.112674 NR_133939 ENSG00000249382 LINC02619 - long intergenic non-protein coding RNA 2619 ncRNA 357-475 chr9 23986014 23986253 + 2 NA Intergenic L1M1|LINE|L1 -135532 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 206-277 chr8 139567947 139568107 + 2 NA Intergenic Intergenic 135096 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 207-305 chr8 136956965 136957079 + 2 NA Intergenic Intergenic 426224 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 577-190 chr8 84546759 84547220 + 2 NA intron (NM_001354308, intron 3 of 9) L1PA8|LINE|L1 131505 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 398-386 chr9 107309142 107309404 + 2 NA intron (NM_001244724, intron 4 of 9) intron (NM_001244724, intron 4 of 9) 24504 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 234-105 chr14 78575600 78575826 + 2 NA intron (NM_004796, intron 1 of 16) L2a|LINE|L2 171994 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 349-359 chr4 21110438 21110670 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -126545 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 188-24 chr11 38215804 38215924 + 2 NA Intergenic Intergenic 277263 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 186-61 chr17 13342448 13342598 + 2 NA Intergenic L1M|LINE|L1 -35763 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 375-170 chr17 71165495 71165752 + 2 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 36556 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 806-48 chr5 45753239 45753746 + 2 NA Intergenic Intergenic -57112 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 427-139 chr21 14552894 14553166 + 2 NA intron (NM_001256370, intron 2 of 8) L1MEh|LINE|L1 -6670 NM_001286523 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 802-51 chr5 13061424 13062030 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -28841 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 336-238 chr19 12530884 12531082 + 2 NA intron (NM_144976, intron 1 of 3) AluJr|SINE|Alu 20499 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 222-176 chr2 67606170 67606340 + 2 NA Intergenic Intergenic 208922 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 564-144 chr4 114213780 114214267 + 2 NA Intergenic Intergenic -234376 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 411-317 chrX 10531174 10531478 + 2 NA intron (NM_033289, intron 2 of 9) intron (NM_033289, intron 2 of 9) 36277 NM_001193281 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 272-160 chr18 4844383 4844546 + 2 NA Intergenic MER4E|LTR|ERV1 -236718 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 343-458 chr6 24760444 24760713 + 2 NA Intergenic AluSz|SINE|Alu -14359 NM_015895 51053 Hs.234896 NM_015895 ENSG00000112312 GMNN Gem|MGORS6 geminin DNA replication inhibitor protein-coding 422-103 chr15 94962380 94962665 + 2 NA Intergenic L1MA6|LINE|L1 107159 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 488-153 chr2 199165407 199165802 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 292335 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 182-83 chr2 19292762 19292893 + 2 NA Intergenic L1MEg|LINE|L1 -55602 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 229-46 chr10 111882396 111882576 + 2 NA Intergenic MIRb|SINE|MIR 301279 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 390-192 chr2 111683256 111683572 + 2 NA Intergenic Intergenic 87720 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 290-44 chr10 29271523 29271747 + 2 NA Intergenic Intergenic -17435 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 445-206 chr4 113964367 113964631 + 2 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 15148 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 273-156 chr16 49100714 49100926 + 2 NA Intergenic LTR16|LTR|ERVL 181018 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 276-30 chr1 191048857 191049094 + 2 NA Intergenic L1MCc|LINE|L1 179523 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 440-65 chr14 42268939 42269362 + 2 NA Intergenic MER57-int|LTR|ERV1 662294 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 517-295 chr9 132723866 132724236 + 2 NA Intergenic Intergenic 53587 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 255-24 chr10 29536569 29536740 + 2 NA intron (NM_001323599, intron 8 of 38) AluSx1|SINE|Alu 8443 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 282-353 chr4 130447193 130447348 + 2 NA Intergenic AluSx3|SINE|Alu 70909 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 356-94 chr11 110779126 110779407 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -66077 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 395-208 chr21 39996070 39996294 + 2 NA Intergenic Intergenic 128744 NM_006198 5121 Hs.80296 NM_006198 ENSG00000183036 PCP4 PEP-19 Purkinje cell protein 4 protein-coding 439-161 chr20 39444957 39445349 + 2 NA Intergenic L1M4a1|LINE|L1 -220405 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 290-27 chr1 182040715 182040964 + 2 NA Intergenic MER61-int|LTR|ERV1 20873 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 285-161 chr18 4724520 4724720 + 2 NA Intergenic L1MC1|LINE|L1 -269313 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 593-3 chr1 61316338 61316829 + 2 NA intron (NM_001134673, intron 3 of 10) intron (NM_001134673, intron 3 of 10) -63065 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 381-227 chr20 18824169 18824365 + 2 NA intron (NR_161343, intron 2 of 2) THE1C|LTR|ERVL-MaLR 5936 NR_161342 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 436-50 chr11 74428164 74428411 + 2 NA Intergenic AluSz|SINE|Alu 29050 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 417-28 chr10 44737971 44738241 + 2 NA Intergenic Intergenic -173210 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 357-56 chr11 11128256 11128492 + 2 NA Intergenic L1PB3|LINE|L1 224876 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 421-61 chr13 25133493 25133822 + 2 NA Intergenic Intergenic 37519 NM_030979 5042 Hs.458280 NM_030979 ENSG00000151846 PABPC3 PABP3|PABPL3|tPABP poly(A) binding protein cytoplasmic 3 protein-coding 479-141 chr3 82609265 82609571 + 2 NA Intergenic L1MA1|LINE|L1 623276 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 316-129 chr12 39939131 39939435 + 2 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 166798 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 216-32 chr10 37331044 37331174 + 2 NA intron (NR_104061, intron 3 of 4) THE1D|LTR|ERVL-MaLR 21923 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 534-91 chr17_KI270730v1_random 106855 107318 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 416-170 chr2 76274367 76274751 + 2 NA Intergenic Intergenic -563644 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 296-459 chr8 59214698 59214967 + 2 NA Intergenic L1PA16|LINE|L1 95622 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 305-97 chr11 79717087 79717284 + 2 NA Intergenic Intergenic -276155 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 233-5 chr1 98223322 98223491 + 2 NA intron (NR_046088, intron 1 of 2) intron (NR_046088, intron 1 of 2) 12695 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 247-161 chr18 514224 514432 + 2 NA intron (NR_136505, intron 2 of 2) intron (NR_136505, intron 2 of 2) 966 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 273-276 chr22 26205623 26205869 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 36272 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 343-387 chr4 59427789 59428031 + 2 NA Intergenic L1MA6|LINE|L1 414337 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 160-79 chr4 101976945 101977062 + 2 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 163161 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 148-86 chr7 31405968 31406086 + 2 NA Intergenic L1M6|LINE|L1 -65301 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 626-56 chr19 37440453 37441052 + 2 NA intron (NM_152484, intron 3 of 5) intron (NM_152484, intron 3 of 5) 26692 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 375-204 chr2 45165084 45165436 + 2 NA Intergenic Intergenic 89681 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 288-228 chr20 41935626 41935893 + 2 NA Intergenic Intergenic -317382 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 461-5 chr1 78802217 78802570 + 2 NA Intergenic Intergenic 152562 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 485-164 chr20 42255926 42256353 + 2 NA intron (NM_007050, intron 13 of 30) Tigger19b|DNA|TcMar-Tigger -429344 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 616-121 chr4 72587778 72588192 + 2 NA Intergenic Intergenic -18764 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 268-262 chr3 178946019 178946222 + 2 NA Intergenic Intergenic -85715 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 316-418 chr5 3421307 3421499 + 2 NA intron (NR_033898, intron 3 of 4) intron (NR_033898, intron 3 of 4) -31413 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 284-422 chr8 135787650 135787908 + 2 NA Intergenic L1PA8A|LINE|L1 330323 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 201-209 chr5 144279432 144279583 + 2 NA intron (NM_001370487, intron 2 of 2) MSTD|LTR|ERVL-MaLR 74116 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 207-163 chr20 54048139 54048293 + 2 NA intron (NM_001366297, intron 3 of 8) intron (NM_001366297, intron 3 of 8) 10804 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 320-465 chr5 146776722 146776998 + 2 NA intron (NM_001271899, intron 2 of 9) L1MB4|LINE|L1 101925 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 224-150 chr2 114110496 114110652 + 2 NA Intergenic Intergenic -130590 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 149-52 chr2 67453344 67453430 + 2 NA Intergenic Intergenic 56054 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 204-159 chr2 194430352 194430500 + 2 NA Intergenic Intergenic 86157 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 397-259 chr5 86721473 86721843 + 2 NA Intergenic L1ME4b|LINE|L1 -25160 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 259-86 chr12 26363989 26364145 + 2 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 168494 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 484-18 chr1 170903350 170903781 + 2 NA Intergenic Intergenic -31906 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 250-382 chr6 135805608 135805777 + 2 NA Intergenic Intergenic -46009 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 160-61 chr3 34304713 34304832 + 2 NA Intergenic Intergenic 506142 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 494-272 chr7 88176605 88176978 + 2 NA intron (NM_001324421, intron 26 of 28) AluSz6|SINE|Alu -39869 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 266-33 chr10 18697777 18697959 + 2 NA Intergenic AluSx1|SINE|Alu 38437 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 279-53 chr10 81149379 81149623 + 2 NA Intergenic Intergenic 499704 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 233-12 chr1 151986367 151986540 + 2 NA intron (NM_002966, intron 1 of 2) L1MA8|LINE|L1 7406 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 395-233 chr3 123339897 123340223 + 2 NA intron (NM_183357, intron 3 of 20) AluJb|SINE|Alu 76282 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 229-381 chr8 53394822 53394978 + 2 NA Intergenic Intergenic 129065 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 712-15 chr10 108511036 108511590 + 2 NA Intergenic Intergenic -442020 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 746-47 chr20 58759744 58760371 + 2 NA Intergenic Intergenic -13368 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 464-194 chr5 9904387 9904733 + 2 NA promoter-TSS (NR_027112) promoter-TSS (NR_027112) -736 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 343-383 chr4 53243191 53243503 + 2 NA intron (NM_152540, intron 4 of 8) L1PREC2|LINE|L1 122714 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 257-402 chr8 33452457 33452641 + 2 NA intron (NM_032664, intron 3 of 4) L1ME3C|LINE|L1 20597 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 183-124 chr5 165604235 165604413 + 2 NA Intergenic L1MC4a|LINE|L1 1134045 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 471-78 chr14 41029865 41030325 + 2 NA intron (NR_109758, intron 3 of 3) AluJb|SINE|Alu 75384 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 356-136 chr14 32490509 32490851 + 2 NA intron (NM_004274, intron 2 of 13) L1MEg|LINE|L1 161382 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 249-92 chr12 43005416 43005608 + 2 NA Intergenic Intergenic -149803 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 419-126 chr18 68141944 68142293 + 2 NA Intergenic Intergenic -327296 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 333-455 chr5 78112795 78112987 + 2 NA intron (NM_003664, intron 19 of 26) intron (NM_003664, intron 19 of 26) 154644 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 371-10 chr1 87858773 87859010 + 2 NA Intergenic L1MC1|LINE|L1 -487236 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 272-361 chr5 128373288 128373488 + 2 NA intron (NM_001999, intron 15 of 64) intron (NM_001999, intron 15 of 64) 164857 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 526-39 chr11 43116753 43117137 + 2 NA Intergenic Intergenic 152424 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 151-57 chr3 102253753 102253889 + 2 NA Intergenic MamRep605|LTR?|LTR? 90116 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 370-416 chr7 45561494 45561724 + 2 NA Intergenic Intergenic -12531 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 317-283 chr21 26367658 26367955 + 2 NA Intergenic Intergenic -25829 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 296-210 chr2 29358895 29359128 + 2 NA intron (NM_004304, intron 5 of 28) L1MB1|LINE|L1 116366 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 260-260 chr3 32635022 32635247 + 2 NA Intergenic L2a|LINE|L2 -50054 NM_015442 25904 Hs.444851 NM_015442 ENSG00000182973 CNOT10 - CCR4-NOT transcription complex subunit 10 protein-coding 375-166 chr17 58875803 58876053 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 120059 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 301-18 chr1 181837165 181837388 + 2 NA Intergenic L1MA6|LINE|L1 224436 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 379-358 chr8 125676915 125677178 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 244837 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 215-292 chr7 17574930 17575086 + 2 NA Intergenic L1MEc|LINE|L1 -16099 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 216-321 chr7 48963813 48964017 + 2 NA Intergenic Intergenic 39368 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 262-185 chr18 78241540 78241746 + 2 NA Intergenic Intergenic -247916 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 341-560 chr9 26825791 26826063 + 2 NA Intergenic HAL1M8|LINE|L1 66875 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 348-101 chr11 116629578 116629827 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -9720 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 561-112 chr20 53472081 53472440 + 2 NA intron (NM_173485, intron 2 of 2) L2c|LINE|L2 -80510 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 869-35 chr2 234658315 234658973 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -24024 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 334-218 chr18 4701975 4702198 + 2 NA Intergenic Intergenic -246779 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 425-100 chr15 76158315 76158689 + 2 NA intron (NM_152335, intron 4 of 10) intron (NM_152335, intron 4 of 10) 22984 NR_120360 101929439 Hs.631721 NR_120360 ENSG00000259422 LOC101929439 - uncharacterized LOC101929439 ncRNA 555-97 chr2 84468608 84468908 + 2 NA Intergenic MER41-int|LTR|ERV1 -9478 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 377-80 chr12 10732466 10732760 + 2 NA Intergenic MamGypLTR1a|LTR|Gypsy -9290 NM_001145426 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 589-87 chr3 78096174 78096663 + 2 NA Intergenic Intergenic -47455 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 315-146 chr15 47286631 47286828 + 2 NA intron (NM_001198999, intron 1 of 19) Charlie1b|DNA|hAT-Charlie 102640 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 363-195 chr19 37349632 37349832 + 2 NA intron (NM_001329779, intron 4 of 4) AluSz|SINE|Alu 15083 NM_001329779 284459 Hs.640243 NM_181786 ENSG00000181666 ZNF875 HKR1 zinc finger protein 875 protein-coding 150-103 chr7 108796638 108796758 + 2 NA Intergenic Intergenic 87889 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 177-32 chr11 114025809 114025949 + 2 NA Intergenic Intergenic -33832 NM_006006 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 287-183 chr2 721336 721588 + 2 NA Intergenic Intergenic -44056 NM_001352680 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 458-9 chr1 182899869 182900299 + 2 NA exon (NM_001345928, exon 11 of 11) exon (NM_001345928, exon 11 of 11) 53082 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 485-256 chr7 2045920 2046364 + 2 NA intron (NM_001013837, intron 12 of 18) intron (NM_001013837, intron 12 of 18) 42910 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 501-283 chr9 137473543 137474021 + 2 NA intron (NM_001098537, intron 25 of 34) L1MEg|LINE|L1 -14448 NM_001130969 26012 Hs.455336 NM_015537 ENSG00000165802 NSMF HH9|NELF NMDA receptor synaptonuclear signaling and neuronal migration factor protein-coding 463-101 chr15 93713623 93714027 + 2 NA Intergenic L1MB3|LINE|L1 -142735 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 320-500 chr6 169415190 169415366 + 2 NA Intergenic L1ME3|LINE|L1 -161164 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 266-311 chr5 13515732 13515897 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 428666 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 283-333 chr4 100634330 100634501 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 40698 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 306-249 chr2 121304954 121305245 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -19897 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 113-26 chr19 30283814 30283901 + 2 NA Intergenic Intergenic -88527 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 387-242 chr4 11350808 11351026 + 2 NA Intergenic Intergenic -17910 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 232-146 chr18 72562401 72562616 + 2 NA Intergenic Intergenic -18166 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 236-129 chr15 68894837 68894987 + 2 NA Intergenic L1MC5|LINE|L1 -35588 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 298-279 chr22 31014145 31014300 + 2 NA Intergenic Intergenic 45011 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 268-287 chr4 98098912 98099087 + 2 NA intron (NM_174952, intron 5 of 10) L1MA1|LINE|L1 44477 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 409-302 chr8 132460990 132461214 + 2 NA intron (NM_004519, intron 1 of 14) L1MC3|LINE|L1 -13840 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 351-60 chr11 20888079 20888360 + 2 NA intron (NM_201551, intron 5 of 18) L1MEd|LINE|L1 218633 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 307-212 chr19 28348672 28348883 + 2 NA Intergenic HAL1|LINE|L1 -257911 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 312-340 chr3 107023908 107024099 + 2 NA Intergenic Intergenic 216635 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 546-35 chr11 28732249 28732642 + 2 NA Intergenic Intergenic -254897 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 883-37 chr7 113954556 113955132 + 2 NA Intergenic L1PA13|LINE|L1 -35835 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 379-391 chrX 35508835 35509120 + 2 NA Intergenic Intergenic -289365 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 280-300 chr4 124597662 124597926 + 2 NA Intergenic Intergenic -39360 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 507-10 chr1 166726296 166726792 + 2 NA Intergenic MLT2B3|LTR|ERVL -112931 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 208-99 chr18 58024449 58024606 + 2 NA Intergenic Intergenic -19699 NM_001144967 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 307-294 chr3 26292435 26292686 + 2 NA Intergenic L1ME2|LINE|L1 -330246 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 322-478 chr7 17507831 17508068 + 2 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 50960 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 444-2 chr1 33981109 33981404 + 2 NA intron (NM_052896, intron 3 of 69) intron (NM_052896, intron 3 of 69) 112300 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 245-215 chr2 239708148 239708365 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -54604 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 215-140 chr2 40046424 40046594 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 128875 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 516-199 chr4 151192661 151193122 + 2 NA intron (NM_001009555, intron 2 of 20) intron (NM_001009555, intron 2 of 20) -17339 NM_001128924 152503 Hs.744983 NM_001009555 ENSG00000109686 SH3D19 EBP|EVE1|Eve-1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 272-464 chr8 137601719 137601955 + 2 NA Intergenic Intergenic -188249 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 325-333 chr3 2153950 2154261 + 2 NA intron (NM_175607, intron 2 of 24) AluSx1|SINE|Alu -9864 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 337-523 chr7 71060038 71060369 + 2 NA Intergenic Intergenic -71941 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 448-243 chr6 99636360 99636674 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 29743 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 342-17 chr1 91866433 91866735 + 2 NA intron (NM_001195684, intron 2 of 17) intron (NM_001195684, intron 2 of 17) 19567 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 124-45 chr21 27736868 27736950 + 2 NA intron (NR_024357, intron 1 of 3) intron (NR_024357, intron 1 of 3) 14530 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 272-483 chr9 132695200 132695452 + 2 NA TTS (NM_012204) TTS (NM_012204) 24862 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 424-247 chr6 158419576 158419936 + 2 NA intron (NM_020245, intron 2 of 13) L1MEd|LINE|L1 96774 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 513-9 chr1 147733388 147733740 + 2 NA Intergenic L1MA4A|LINE|L1 27038 NM_181703 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 647-55 chr20 42145069 42145531 + 2 NA intron (NM_133170, intron 18 of 31) AluSx4|SINE|Alu -526923 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 183-85 chr21 22332487 22332656 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 233954 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 417-273 chr7 126027423 126027763 + 2 NA Intergenic Intergenic -763302 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 228-266 chr5 41615159 41615378 + 2 NA Intergenic L2b|LINE|L2 -104667 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 424-27 chr10 68482747 68482990 + 2 NA non-coding (NR_136737, exon 8 of 8) non-coding (NR_136737, exon 8 of 8) -10747 NR_102264 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 126-34 chr2 16047218 16047310 + 2 NA Intergenic HAL1|LINE|L1 -3163 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 443-173 chr20 2040911 2041192 + 2 NA Intergenic LTR36|LTR|ERV1 -46766 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 281-431 chr8 71138417 71138590 + 2 NA Intergenic Intergenic 218203 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 382-331 chr5 88584503 88584881 + 2 NA intron (NR_152235, intron 2 of 3) Eulor8|DNA|TcMar? 82247 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 449-177 chr3 172878415 172878828 + 2 NA Intergenic UCON33|DNA|TcMar-Tigger 127619 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 376-356 chr6 155768954 155769242 + 2 NA Intergenic L1MA5A|LINE|L1 -177699 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 339-353 chr3 34633161 34633337 + 2 NA Intergenic L1MC1|LINE|L1 760774 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 309-478 chr6 65680565 65680754 + 2 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 26566 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 340-41 chr10 32627458 32627759 + 2 NA intron (NM_001321115, intron 19 of 43) L1MA7|LINE|L1 181468 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 424-243 chr6 121868600 121868866 + 2 NA Intergenic Intergenic 433087 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 537-114 chr2 84195353 84195717 + 2 NA Intergenic Intergenic -95147 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 337-588 chr9 94464381 94464656 + 2 NA Intergenic L1MDa|LINE|L1 89949 NM_032558 84641 Hs.555996 NM_032558 ENSG00000148110 MFSD14B HIATL1 major facilitator superfamily domain containing 14B protein-coding 260-441 chr8 110292477 110292679 + 2 NA Intergenic Intergenic -316807 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 380-332 chr6 37344223 37344530 + 2 NA Intergenic AluJr|SINE|Alu -9607 NM_183078 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 332-24 chr1 164071697 164071994 + 2 NA Intergenic L1MA1|LINE|L1 -487515 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 210-110 chr19 50633370 50633560 + 2 NA intron (NM_001160328, intron 3 of 10) intron (NM_001160328, intron 3 of 10) 4580 NM_032298 84258 Hs.515554 NM_032298 ENSG00000213023 SYT3 SytIII synaptotagmin 3 protein-coding 176-133 chr7 78982914 78983023 + 2 NA intron (NM_001301128, intron 2 of 20) MER33|DNA|hAT-Charlie -26020 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 242-189 chr2 84691145 84691352 + 2 NA intron (NM_001370, intron 45 of 76) intron (NM_001370, intron 45 of 76) 174793 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 431-148 chr2 173323733 173324089 + 2 NA Intergenic AluJb|SINE|Alu -30961 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 398-195 chr22 34408138 34408394 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -485378 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 390-118 chr15 79458602 79458936 + 2 NA intron (NM_015206, intron 2 of 3) intron (NM_015206, intron 2 of 3) 26253 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 306-530 chr8 133770215 133770494 + 2 NA Intergenic MER4D1|LTR|ERV1 6998 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 525-120 chr2 98290752 98291107 + 2 NA intron (NM_001345864, intron 17 of 21) L2a|LINE|L2 -55226 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 318-213 chr18 2406547 2406711 + 2 NA Intergenic Intergenic 164876 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 217-310 chr5 142338463 142338592 + 2 NA intron (NR_120664, intron 1 of 3) L1MEd|LINE|L1 13234 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 314-139 chr12 119336256 119336527 + 2 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 1662 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 341-138 chr13 79617011 79617198 + 2 NA Intergenic Intergenic 50377 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 272-468 chr9 17301722 17301875 + 2 NA 3' UTR (NM_001114395, exon 7 of 7) 3' UTR (NM_001114395, exon 7 of 7) 166758 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 519-36 chr11 96224310 96224655 + 2 NA intron (NM_032427, intron 1 of 4) L2c|LINE|L2 -116956 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 146-89 chr8 111803207 111803317 + 2 NA Intergenic Intergenic 426623 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 326-383 chr4 127756619 127756906 + 2 NA intron (NM_001318467, intron 2 of 6) intron (NM_001318467, intron 2 of 6) -25034 NM_001317381 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 439-94 chr14 83304988 83305280 + 2 NA Intergenic MIR|SINE|MIR 662502 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 457-179 chr4 97389749 97390034 + 2 NA intron (NR_102713, intron 1 of 5) intron (NR_102713, intron 1 of 5) 22965 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 397-242 chr5 12034360 12034697 + 2 NA Intergenic Intergenic -130082 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 423-84 chr15 26840427 26840706 + 2 NA Intergenic L1M5|LINE|L1 -26496 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 339-74 chr10 107106190 107106392 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 58415 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 577-165 chr6 5051270 5051653 + 2 NA intron (NR_126015, intron 2 of 3) L1M4c|LINE|L1 21489 NR_126019 100129461 Hs.131700 NR_126015 ENSG00000272142 LYRM4-AS1 - LYRM4 antisense RNA 1 ncRNA 223-32 chr10 33000128 33000268 + 2 NA Intergenic L1P4|LINE|L1 -41968 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 329-218 chr17 65396708 65396971 + 2 NA Intergenic Intergenic -60702 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 323-563 chr8 130838253 130838431 + 2 NA intron (NM_001115, intron 11 of 17) intron (NM_001115, intron 11 of 17) 202567 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 365-98 chr12 52733422 52733756 + 2 NA Intergenic Intergenic -30065 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 501-24 chr10 64404570 64405045 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -420721 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 339-5 chr1 36978801 36979122 + 2 NA intron (NM_000831, intron 1 of 15) MLT1H|LTR|ERVL-MaLR 55554 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 705-27 chr13 110084814 110085212 + 2 NA Intergenic L1MA4|LINE|L1 31728 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 353-184 chr17 27993773 27994120 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -2239 NR_146896 105371708 Hs.385535 NR_146896 LINC01992 - long intergenic non-protein coding RNA 1992 ncRNA 193-91 chr2 9468935 9469092 + 2 NA intron (NM_016207, intron 16 of 17) intron (NM_016207, intron 16 of 17) -5538 NM_001320863 285148 Hs.667226 NM_001039613 ENSG00000134330 IAH1 - isoamyl acetate hydrolyzing esterase 1 (putative) protein-coding 268-82 chr12 29808119 29808268 + 2 NA Intergenic L1ME1|LINE|L1 -23434 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 505-29 chr10 74344043 74344370 + 2 NA intron (NM_001369124, intron 4 of 9) L1M4|LINE|L1 167443 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 668-83 chr5 87173765 87174251 + 2 NA intron (NR_105018, intron 2 of 3) L1MC5a|LINE|L1 53860 NR_105018 101929380 NR_105018 LOC101929380 - uncharacterized LOC101929380 ncRNA 421-162 chr20 7313968 7314374 + 2 NA Intergenic Intergenic -6739 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 695-62 chr22 46835225 46835795 + 2 NA intron (NM_001284305, intron 4 of 12) L1MA9|LINE|L1 61583 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 176-124 chr6 156165242 156165392 + 2 NA Intergenic Intergenic -213433 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 514-234 chr5 125201499 125201834 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 164835 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 334-31 chr1 173135537 173135799 + 2 NA Intergenic Intergenic 69864 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 285-401 chr8 42648673 42648860 + 2 NA Intergenic AluY|SINE|Alu -48600 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 262-459 chr9 103807750 103807935 + 2 NA Intergenic L1MB3|LINE|L1 -191867 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 306-332 chr3 169674568 169674726 + 2 NA Intergenic AluSz|SINE|Alu -10935 NM_001366466 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 183-55 chr15 77198249 77198364 + 2 NA intron (NM_024776, intron 4 of 7) Tigger2|DNA|TcMar-Tigger 27098 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 440-229 chr6 154054720 154055096 + 2 NA intron (NM_001285522, intron 1 of 1) intron (NM_001285522, intron 1 of 1) 15497 NR_104351 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 336-283 chr2 118560203 118560388 + 2 NA Intergenic Intergenic 42671 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 185-101 chr2 107375222 107375402 + 2 NA Intergenic L1MC3|LINE|L1 -25787 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 466-217 chr5 150864566 150864954 + 2 NA intron (NM_001346557, intron 2 of 3) intron (NM_001346557, intron 2 of 3) 18237 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 275-222 chr20 21429743 21429951 + 2 NA Intergenic Intergenic -32321 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 229-111 chr14 52244735 52244884 + 2 NA Intergenic L2|LINE|L2 -22889 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 310-38 chr10 22183965 22184252 + 2 NA Intergenic L2b|LINE|L2 25875 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 248-157 chr18 13394287 13394530 + 2 NA intron (NM_181482, intron 3 of 5) Charlie29a|DNA|hAT-Charlie 33126 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 125-32 chr21 15435252 15435337 + 2 NA Intergenic Intergenic -294640 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 237-333 chr6 124582855 124582987 + 2 NA intron (NM_001300738, intron 4 of 7) L1MA3|LINE|L1 299916 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 338-162 chr14 49909215 49909518 + 2 NA Intergenic Intergenic 16284 NM_001663 382 Hs.525330 NM_001663 ENSG00000165527 ARF6 - ADP ribosylation factor 6 protein-coding 406-88 chr14 73107159 73107527 + 2 NA intron (NM_021239, intron 12 of 18) intron (NM_021239, intron 12 of 18) -29164 NM_007318 5663 Hs.3260 NM_000021 ENSG00000080815 PSEN1 ACNINV3|AD3|FAD|PS-1|PS1|S182 presenilin 1 protein-coding 274-369 chr8 5216452 5216686 + 2 NA Intergenic Intergenic -221655 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 401-167 chr2 115794996 115795338 + 2 NA intron (NM_001321912, intron 20 of 25) intron (NM_001321912, intron 20 of 25) 451352 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 504-113 chr19 52120026 52120464 + 2 NA intron (NM_178523, intron 3 of 3) L1M4c|LINE|L1 19693 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 426-200 chr4 33705644 33706053 + 2 NA Intergenic L1MB1|LINE|L1 334045 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 292-5 chr1 36506917 36507124 + 2 NA Intergenic MIR|SINE|MIR -23706 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 307-223 chr2 22444737 22444940 + 2 NA Intergenic Intergenic -91641 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 337-278 chr2 161361474 161361781 + 2 NA intron (NM_005805, intron 3 of 11) L1M4|LINE|L1 53202 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 339-94 chr11 45696396 45696611 + 2 NA Intergenic Intergenic -4727 NR_106976 102465691 NR_106976 ENSG00000276639 MIR7154 hsa-mir-7154 microRNA 7154 ncRNA 592-113 chr3 102874398 102874893 + 2 NA Intergenic Intergenic 439630 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 240-245 chr2 174278679 174278910 + 2 NA Intergenic AluSx3|SINE|Alu -30262 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 356-302 chr22 19273786 19273996 + 2 NA intron (NM_007098, intron 2 of 32) MER90a|LTR|ERV1 17828 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 216-72 chr12 25857758 25857965 + 2 NA Intergenic L2b|LINE|L2 16218 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 248-371 chr7 35290389 35290589 + 2 NA Intergenic Intergenic -23366 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 315-163 chr15 100457459 100457677 + 2 NA intron (NM_001290341, intron 12 of 13) L1ME1|LINE|L1 84629 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 227-40 chr10 65967977 65968179 + 2 NA intron (NM_001127384, intron 16 of 17) intron (NM_001127384, intron 16 of 17) 396653 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 507-239 chr8 10131827 10132166 + 2 NA intron (NM_001199729, intron 2 of 6) UCON33|DNA|TcMar-Tigger 36345 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 875-21 chr3 326974 327474 + 2 NA intron (NM_001253388, intron 2 of 24) intron (NM_001253388, intron 2 of 24) 7541 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 584-67 chr2 3066088 3066643 + 2 NA intron (NR_110228, intron 3 of 6) intron (NR_110228, intron 3 of 6) 59661 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 295-423 chr6 164383431 164383698 + 2 NA Intergenic Intergenic 438499 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 233-236 chr3 77403997 77404158 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 306065 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 433-267 chr7 108698516 108698840 + 2 NA Intergenic Intergenic 128804 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 280-95 chr12 82184453 82184670 + 2 NA Intergenic Intergenic 173826 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 319-122 chr12 132883903 132884130 + 2 NA intron (NM_018223, intron 2 of 17) AluSz|SINE|Alu 3602 NM_001161346 55743 Hs.720197 NM_018223 ENSG00000072609 CHFR RNF116|RNF196 checkpoint with forkhead and ring finger domains protein-coding 311-255 chr2 81337292 81337558 + 2 NA Intergenic Intergenic 129521 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 193-43 chr11 102208474 102208612 + 2 NA intron (NM_001282100, intron 5 of 7) intron (NM_001282100, intron 5 of 7) 96095 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 265-146 chr18 4465567 4465735 + 2 NA Intergenic L1ME3|LINE|L1 -10344 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 443-84 chr13 92311071 92311409 + 2 NA intron (NM_004466, intron 7 of 7) L2a|LINE|L2 40967 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 409-17 chr1 248152086 248152311 + 2 NA Intergenic L1PB1|LINE|L1 7050 NM_001004690 127059 Hs.553580 NM_001004690 ENSG00000162727 OR2M5 OR2M5P olfactory receptor family 2 subfamily M member 5 protein-coding 491-15 chr10 48748278 48748667 + 2 NA intron (NM_020945, intron 12 of 61) intron (NM_020945, intron 12 of 61) 63009 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 291-229 chr2 114708372 114708576 + 2 NA intron (NM_001321910, intron 2 of 26) MER70B|LTR|ERVL 125074 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 174-73 chr20 1243307 1243418 + 2 NA intron (NM_001136566, intron 10 of 13) intron (NM_001136566, intron 10 of 13) 17242 NM_001136566 642636 Hs.713451 NM_001136566 ENSG00000244588 RAD21L1 RAD21L|dJ545L17.2 RAD21 cohesin complex component like 1 protein-coding 150-40 chr15 57180292 57180399 + 2 NA intron (NM_001322154, intron 6 of 20) intron (NM_001322154, intron 6 of 20) -39085 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 249-90 chr12 38370507 38370689 + 2 NA Intergenic L2c|LINE|L2 53824 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 361-305 chr3 135689961 135690151 + 2 NA Intergenic Intergenic -275672 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 334-427 chr5 81158006 81158209 + 2 NA intron (NM_006909, intron 17 of 26) L1MB8|LINE|L1 -75213 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 219-284 chr5 64682297 64682482 + 2 NA Intergenic Intergenic -8114 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 295-87 chr11 115017662 115017870 + 2 NA Intergenic L1MC4|LINE|L1 -315811 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 287-29 chr1 181710310 181710499 + 2 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 226887 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 628-121 chr7 64587751 64588285 + 2 NA intron (NR_077227, intron 1 of 2) L1PREC2|LINE|L1 5408 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 455-150 chr20 47459415 47459715 + 2 NA Intergenic Intergenic -42322 NM_001174088 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 343-465 chr6 56044515 56044786 + 2 NA Intergenic L1ME2|LINE|L1 47012 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 224-89 chr14 82005859 82005995 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -262789 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 163-25 chr11 42127051 42127165 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -41650 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 191-98 chr2 77354016 77354199 + 2 NA intron (NR_146416, intron 1 of 1) MER66A|LTR|ERV1 168269 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 252-338 chr5 96110294 96110496 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 31257 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 499-100 chr19 21317880 21318239 + 2 NA intron (NM_021269, intron 1 of 3) intron (NM_021269, intron 1 of 3) 11351 NM_021269 7562 Hs.466296 NM_021269 ENSG00000182141 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 337-599 chrX 66272124 66272455 + 2 NA Intergenic L1PA14|LINE|L1 104539 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 549-99 chr2 2928914 2929455 + 2 NA intron (NR_110228, intron 5 of 6) THE1C|LTR|ERVL-MaLR 196842 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 294-189 chr19 51073515 51073735 + 2 NA Intergenic L1MA9|LINE|L1 -8533 NM_001348178 26085 Hs.165296 NM_015596 ENSG00000167759 KLK13 KLK-L4|KLKL4 kallikrein related peptidase 13 protein-coding 184-27 chr10 61279061 61279218 + 2 NA Intergenic Intergenic -173500 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 278-250 chr20 35160288 35160497 + 2 NA intron (NM_001355008, intron 5 of 14) AluJo|SINE|Alu -11680 NM_006404 10544 Hs.647450 NM_006404 ENSG00000101000 PROCR CCCA|CCD41|EPCR protein C receptor protein-coding 273-310 chr3 191408629 191408784 + 2 NA Intergenic L1MB4|LINE|L1 -16818 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 515-201 chr5 40923305 40923695 + 2 NA intron (NM_000587, intron 1 of 17) AluSx1|SINE|Alu 14003 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 324-297 chr2 215047325 215047543 + 2 NA intron (NR_103740, intron 7 of 54) L1PREC2|LINE|L1 -15348 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 145-25 chr13 66430491 66430629 + 2 NA intron (NM_001318373, intron 3 of 3) L2b|LINE|L2 212310 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 248-35 chr10 44943867 44944043 + 2 NA intron (NR_033842, intron 1 of 7) L1MB7|LINE|L1 15734 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 647-94 chr7 54575939 54576476 + 2 NA Intergenic LTR16C|LTR|ERVL 19237 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 327-420 chr5 141411895 141412175 + 2 NA intron (NM_018926, intron 1 of 3) intron (NM_018926, intron 1 of 3) -1141 NM_018913 56106 Hs.368160 NM_018913 ENSG00000253846 PCDHGA10 PCDH-GAMMA-A10 protocadherin gamma subfamily A, 10 protein-coding 282-181 chr18 77110078 77110335 + 2 NA intron (NM_001025100, intron 1 of 3) intron (NM_001025100, intron 1 of 3) 22577 NM_001025100 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 260-69 chr10 129999474 129999722 + 2 NA Intergenic AluSz6|SINE|Alu -35324 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 707-62 chr20 15389346 15389846 + 2 NA intron (NM_001351663, intron 6 of 17) MER46C|DNA|TcMar-Tigger 192756 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 314-581 chr8 117406252 117406449 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -114363 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 208-27 chr10 77348134 77348307 + 2 NA intron (NM_001322838, intron 1 of 29) MER103C|DNA|hAT-Charlie 2541 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 369-394 chr8 10158215 10158499 + 2 NA intron (NM_001199729, intron 2 of 6) L1MB7|LINE|L1 62706 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 491-213 chr5 87559254 87559738 + 2 NA Intergenic Intergenic -102546 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 274-233 chr20 16660775 16660937 + 2 NA Intergenic Intergenic -69170 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 236-148 chr17 74877641 74877826 + 2 NA 3' UTR (NM_178128, exon 6 of 6) 3' UTR (NM_178128, exon 6 of 6) -4739 NM_001258015 2232 Hs.69745 NM_004110 ENSG00000161513 FDXR ADR|ADXR|ANOA ferredoxin reductase protein-coding 343-142 chr14 61228062 61228325 + 2 NA Intergenic Intergenic 53145 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 273-63 chr10 94649297 94649494 + 2 NA Intergenic L1MA7|LINE|L1 -34334 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 364-156 chr16 64115938 64116291 + 2 NA Intergenic Intergenic 1005949 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 245-103 chr12 94930000 94930173 + 2 NA Intergenic Intergenic 73611 NM_018838 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 321-505 chr6 118808845 118809156 + 2 NA Intergenic Intergenic 26292 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 560-39 chr12 98141305 98141738 + 2 NA Intergenic Intergenic -146073 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 793-34 chr3 101680963 101681555 + 2 NA intron (NM_000986, intron 5 of 5) intron (NM_000986, intron 5 of 5) -4127 NM_014415 27107 Hs.655286 NM_014415 ENSG00000066422 ZBTB11 MRT69|ZNF-U69274|ZNF913 zinc finger and BTB domain containing 11 protein-coding 294-33 chr10 33894760 33894942 + 2 NA Intergenic FLAM_C|SINE|Alu -122171 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 154-6 chr1 106049228 106049325 + 2 NA Intergenic LTR78|LTR|ERV1 -21023 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 428-52 chr13 33552243 33552561 + 2 NA intron (NM_001243476, intron 3 of 17) L1M4|LINE|L1 124392 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 458-138 chr2 126332735 126333017 + 2 NA Intergenic L1MB8|LINE|L1 -214891 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 489-101 chr17 435599 436026 + 2 NA Intergenic L1M5|LINE|L1 10128 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 309-422 chr5 10805416 10805608 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -44278 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 243-34 chr10 26372657 26372839 + 2 NA Intergenic L1MB8|LINE|L1 -65593 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 289-128 chr13 96976589 96976761 + 2 NA intron (NR_051966, intron 1 of 2) HAL1|LINE|L1 7497 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 315-282 chr20 59311737 59312020 + 2 NA intron (NM_207032, intron 2 of 4) intron (NM_207032, intron 2 of 4) 11267 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 344-24 chr1 163479216 163479524 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -56179 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 206-235 chr6 63339285 63339409 + 2 NA Intergenic L1M2|LINE|L1 -19364 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 227-346 chr7 46677126 46677302 + 2 NA Intergenic L1MA9|LINE|L1 19908 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 354-493 chr9 34700253 34700444 + 2 NA Intergenic L2a|LINE|L2 -9072 NM_006274 6363 Hs.50002 NM_006274 ENSG00000172724 CCL19 CKb11|ELC|MIP-3b|MIP3B|SCYA19 C-C motif chemokine ligand 19 protein-coding 424-94 chr16 71449768 71450024 + 2 NA intron (NM_001304494, intron 2 of 2) intron (NM_001304494, intron 2 of 2) -7842 NM_001367365 274-20 chr1 190871964 190872146 + 2 NA Intergenic Intergenic 247165 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 568-11 chr10 42972577 42972983 + 2 NA Intergenic L1ME4a|LINE|L1 8727 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 343-328 chr3 20072245 20072469 + 2 NA exon (NM_003884, exon 2 of 18) exon (NM_003884, exon 2 of 18) 31911 NM_003884 8850 Hs.533055 NM_003884 ENSG00000114166 KAT2B CAF|P/CAF|PCAF lysine acetyltransferase 2B protein-coding 315-497 chr8 134025762 134025965 + 2 NA Intergenic Intergenic 139367 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 241-41 chr10 67586547 67586751 + 2 NA intron (NM_001127384, intron 3 of 17) L1PA3|LINE|L1 79011 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 269-290 chr4 106813862 106814053 + 2 NA Intergenic Intergenic 222356 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 368-292 chr3 67983487 67983687 + 2 NA Intergenic Intergenic -8005 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 315-151 chr15 62787505 62787690 + 2 NA intron (NM_015059, intron 42 of 55) intron (NM_015059, intron 42 of 55) -36360 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 516-273 chr9 107291799 107292287 + 2 NA intron (NM_001244713, intron 1 of 9) intron (NM_001244713, intron 1 of 9) 7274 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 288-257 chr3 44574167 44574438 + 2 NA intron (NM_001288592, intron 5 of 5) AluJb|SINE|Alu -10662 NM_173658 285349 Hs.733134 NM_173658 ENSG00000144792 ZNF660 - zinc finger protein 660 protein-coding 234-234 chr3 40592188 40592405 + 2 NA Intergenic Intergenic 67336 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 464-271 chr9 138071321 138071611 + 2 NA intron (NM_001243812, intron 31 of 45) intron (NM_001243812, intron 31 of 45) -26395 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 403-249 chr5 73733233 73733602 + 2 NA intron (NM_001177693, intron 2 of 35) MIR|SINE|MIR -80129 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 264-199 chr2 52874732 52874908 + 2 NA Intergenic Intergenic -172205 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 226-61 chr11 115037439 115037661 + 2 NA Intergenic HAL1|LINE|L1 -296027 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 353-392 chr4 159646019 159646306 + 2 NA Intergenic L1MA6|LINE|L1 131622 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 375-315 chr5 25111934 25112144 + 2 NA Intergenic AluY|SINE|Alu 78617 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 258-302 chr4 171680825 171681024 + 2 NA Intergenic Intergenic -42161 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 523-226 chr5 128798634 128798982 + 2 NA Intergenic L1MEd|LINE|L1 -166319 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 342-252 chr2 130856310 130856591 + 2 NA intron (NM_001367493, intron 1 of 13) L1M4b|LINE|L1 19536 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 396-139 chr18 80085705 80085974 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 18583 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 307-308 chr3 89979921 89980144 + 2 NA Intergenic Intergenic 872411 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 373-168 chr18 61480586 61480834 + 2 NA intron (NM_031891, intron 1 of 11) MER4A1|LTR|ERV1 147280 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 223-346 chr8 98321889 98322019 + 2 NA Intergenic MIRb|SINE|MIR -27719 NM_001321635 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 548-234 chr8 83761862 83762190 + 2 NA Intergenic Intergenic 358268 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 363-409 chr7 29253349 29253705 + 2 NA intron (NM_001293072, intron 1 of 12) MLT1J|LTR|ERVL-MaLR -44557 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 332-598 chrX 126724863 126725073 + 2 NA Intergenic Intergenic -94761 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 188-133 chr3 100677477 100677583 + 2 NA intron (NM_001308362, intron 9 of 9) L1MA3|LINE|L1 -31760 NM_001007565 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 260-78 chr11 42053863 42054052 + 2 NA intron (NR_135065, intron 6 of 9) intron (NR_135065, intron 6 of 9) 31501 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 304-226 chr19 47988810 47989096 + 2 NA intron (NM_001128326, intron 1 of 5) intron (NM_001128326, intron 1 of 5) 3217 NM_001128326 100131137 Hs.651072 NM_001128326 ENSG00000188334 BSPH1 BSP1|ELSPBP2 binder of sperm protein homolog 1 protein-coding 320-401 chr4 116719696 116720009 + 2 NA Intergenic Intergenic 365724 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 436-124 chr2 16453460 16453813 + 2 NA Intergenic Intergenic 212198 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 350-205 chr2 5267600 5267819 + 2 NA Intergenic Intergenic 423409 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 351-524 chrX 14248453 14248758 + 2 NA Intergenic Intergenic 4340 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 623-115 chr6 109950430 109950853 + 2 NA Intergenic AluSg|SINE|Alu -27615 NM_001286099 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 327-484 chr8 57439743 57439910 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 96039 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 324-568 chr9 82166420 82166685 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 177780 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 437-129 chr2 44600713 44601019 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 238919 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 226-209 chr22 27131051 27131273 + 2 NA Intergenic Intergenic -56354 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 297-217 chr2 100010938 100011103 + 2 NA intron (NM_002285, intron 3 of 23) AluY|SINE|Alu 94563 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 222-225 chr3 3453299 3453494 + 2 NA Intergenic Intergenic -273679 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 542-39 chr11 118708945 118709290 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -29467 NM_007180 11181 Hs.129712 NM_007180 ENSG00000118094 TREH TRE|TREA|TREHD trehalase protein-coding 347-37 chr1 240994862 240995072 + 2 NA intron (NM_001350116, intron 3 of 16) AluJr4|SINE|Alu -137305 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 373-20 chr1 101307703 101308041 + 2 NA Intergenic Intergenic -15965 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 443-248 chr5 109642877 109643174 + 2 NA Intergenic Intergenic -46341 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 239-95 chr14 37109744 37109919 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -62195 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 393-194 chr20 10875984 10876342 + 2 NA non-coding (NR_109866, exon 7 of 7) non-coding (NR_109866, exon 7 of 7) 33109 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 322-349 chr3 135899457 135899662 + 2 NA Intergenic L1MEd|LINE|L1 -66169 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 423-167 chr22 34015756 34016096 + 2 NA Intergenic L1MCb|LINE|L1 -93038 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 353-471 chr6 161913690 161914025 + 2 NA intron (NM_004562, intron 6 of 11) MLT1A|LTR|ERVL-MaLR 442880 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 340-462 chr5 118249050 118249307 + 2 NA intron (NR_104997, intron 2 of 2) L1MA4A|LINE|L1 -33396 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 529-98 chr2 49103314 49103749 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 43928 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 433-242 chr6 48076345 48076758 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -7862 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 132-89 chr8 92171470 92171594 + 2 NA Intergenic Intergenic -68147 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 329-11 chr1 89123565 89123747 + 2 NA intron (NM_004120, intron 1 of 10) L1MC4a|LINE|L1 2458 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 329-183 chr15 46000560 46000809 + 2 NA Intergenic L1M2|LINE|L1 295489 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 551-17 chr10 55483093 55483474 + 2 NA intron (NM_001354404, intron 2 of 34) L1PA13|LINE|L1 -115759 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 419-277 chr7 86716099 86716381 + 2 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 72326 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 357-68 chr11 75088440 75088634 + 2 NA TTS (NM_001005285) TTS (NM_001005285) 8353 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 215-34 chr10 57036913 57037087 + 2 NA Intergenic L1MA6|LINE|L1 267559 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 340-310 chr20 12852180 12852501 + 2 NA Intergenic L1MDa|LINE|L1 84623 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 204-100 chr15 60113331 60113489 + 2 NA Intergenic Intergenic 109099 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 367-297 chr3 128444793 128445149 + 2 NA Intergenic Intergenic -18623 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 523-56 chr11 103791128 103791487 + 2 NA Intergenic L1MD1|LINE|L1 -58599 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 307-289 chr22 49594528 49594811 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -51203 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 467-22 chr10 25911940 25912214 + 2 NA Intergenic Intergenic 21633 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 432-216 chr5 13223036 13223386 + 2 NA Intergenic L1MA2|LINE|L1 -190325 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 263-374 chr6 150540189 150540445 + 2 NA Intergenic Intergenic -59568 NR_138139 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 415-109 chr19 36342915 36343197 + 2 NA intron (NM_001297619, intron 4 of 4) intron (NM_001297619, intron 4 of 4) -11338 NR_038278 100506930 Hs.595153 NR_038278 ENSG00000232677 LINC00665 - long intergenic non-protein coding RNA 665 ncRNA 313-31 chr1 216729151 216729330 + 2 NA intron (NM_001243513, intron 1 of 7) MER94|DNA|hAT-Blackjack -5768 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 220-192 chr2 225924372 225924566 + 2 NA Intergenic Intergenic -218325 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 341-363 chr3 189653714 189653990 + 2 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) 22463 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 412-260 chr5 104837576 104837886 + 2 NA Intergenic Intergenic -261743 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 207-233 chr5 18806728 18806876 + 2 NA Intergenic Intergenic 999528 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 258-156 chr16 78410219 78410440 + 2 NA intron (NM_001291997, intron 5 of 7) MLT1D|LTR|ERVL-MaLR 310675 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 128-37 chr20 40341067 40341147 + 2 NA Intergenic L1MC|LINE|L1 336646 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 299-10 chr1 46585335 46585492 + 2 NA intron (NM_198973, intron 2 of 11) intron (NM_198973, intron 2 of 11) 18855 NM_198973 8569 Hs.371594 NM_003684 ENSG00000079277 MKNK1 MNK1 MAPK interacting serine/threonine kinase 1 protein-coding 312-175 chr16 25753631 25753872 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 61792 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 447-146 chr2 198041366 198041636 + 2 NA intron (NM_006226, intron 1 of 5) L2b|LINE|L2 236908 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 254-412 chr8 91780633 91780789 + 2 NA Intergenic Intergenic 236969 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 368-2 chr1 15104979 15105341 + 2 NA intron (NM_201628, intron 13 of 14) L1M4|LINE|L1 47304 NR_027136 200197 Hs.531424 NM_182534 ENSG00000175147 TMEM51-AS1 C1orf126 TMEM51 antisense RNA 1 ncRNA 439-138 chr2 114915512 114915846 + 2 NA intron (NM_001321910, intron 2 of 26) L1PA15|LINE|L1 -82131 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 487-307 chr9 28915265 28915544 + 2 NA intron (NM_001354574, intron 2 of 5) MER5A|DNA|hAT-Charlie -26449 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 395-325 chr7 148039717 148039959 + 2 NA intron (NM_014141, intron 14 of 22) intron (NM_014141, intron 14 of 22) 368159 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 381-43 chr10 31475323 31475513 + 2 NA intron (NM_001323678, intron 2 of 6) L1PB4|LINE|L1 -75663 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 302-416 chr7 71367329 71367556 + 2 NA intron (NM_022479, intron 2 of 10) intron (NM_022479, intron 2 of 10) -59672 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 259-81 chr11 133260898 133261062 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 271521 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 274-101 chr12 99751369 99751636 + 2 NA intron (NM_152788, intron 8 of 25) intron (NM_152788, intron 8 of 25) 103749 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 239-40 chr10 80792138 80792329 + 2 NA Intergenic L1MC1|LINE|L1 142436 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 559-131 chr4 5320490 5320901 + 2 NA intron (NM_001306082, intron 4 of 12) intron (NM_001306082, intron 4 of 12) -203874 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 469-138 chr2 114160330 114160667 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -180514 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 188-183 chr6 68402806 68402947 + 2 NA Intergenic L1P4|LINE|L1 -72977 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 442-209 chr4 52506366 52506743 + 2 NA Intergenic LTR85a|LTR|Gypsy? 149985 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 528-165 chr3 121984819 121985223 + 2 NA Intergenic L1MDb|LINE|L1 37226 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 582-118 chr5 18074315 18074752 + 2 NA Intergenic Intergenic 267259 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 344-409 chr6 5321609 5321899 + 2 NA intron (NM_006567, intron 1 of 6) intron (NM_006567, intron 1 of 6) 60241 NM_006567 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 630-136 chr8 76067198 76067824 + 2 NA Intergenic L1MA9|LINE|L1 -339143 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 449-193 chr4 93541588 93541858 + 2 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -287030 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 288-187 chr2 59564502 59564735 + 2 NA Intergenic LTR33|LTR|ERVL 346910 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 421-325 chrX 23465677 23466069 + 2 NA Intergenic L1MB2|LINE|L1 131024 NM_173495 139411 Hs.319503 NM_173495 ENSG00000165186 PTCHD1 AUTSX4 patched domain containing 1 protein-coding 312-302 chr21 20378385 20378578 + 2 NA Intergenic L1MC1|LINE|L1 -119796 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 217-335 chr6 159966683 159966862 + 2 NA Intergenic Intergenic -2327 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 326-232 chr2 19796935 19797158 + 2 NA Intergenic Intergenic -71808 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 247-331 chr5 92769813 92769997 + 2 NA Intergenic Intergenic 801438 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 240-48 chr10 53750647 53750841 + 2 NA Intergenic Intergenic -735486 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 318-111 chr11 95324293 95324586 + 2 NA Intergenic MLT2A1|LTR|ERVL -91964 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 246-192 chr2 76132229 76132433 + 2 NA Intergenic L1ME3A|LINE|L1 -421416 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 546-230 chr8 10739119 10739529 + 2 NA intron (NR_146188, intron 1 of 2) L1MEf|LINE|L1 -8813 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box transcription factor 7 protein-coding 371-235 chr3 31267488 31267698 + 2 NA Intergenic Intergenic -105806 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 265-307 chr5 67574158 67574369 + 2 NA Intergenic L1M4|LINE|L1 72526 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 301-132 chr15 54294498 54294749 + 2 NA intron (NM_001329919, intron 10 of 31) intron (NM_001329919, intron 10 of 31) 281975 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 234-314 chr5 104328212 104328442 + 2 NA Intergenic Intergenic -765538 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 538-13 chr1 111204700 111205062 + 2 NA promoter-TSS (NM_001271833) promoter-TSS (NM_001271833) -343 NM_001271833 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 396-61 chr10 111523100 111523357 + 2 NA Intergenic Intergenic 408937 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 331-352 chr3 79244899 79245104 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -166726 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 241-396 chr8 83919793 83919963 + 2 NA Intergenic MER67D|LTR|ERV1 -262909 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 333-322 chr21 28451298 28451601 + 2 NA Intergenic Intergenic -87869 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 323-242 chr2 51193409 51193684 + 2 NA intron (NR_135237, intron 2 of 10) L1PA11|LINE|L1 160945 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 255-70 chr12 12587742 12587966 + 2 NA Intergenic AluJb|SINE|Alu -24022 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 426-80 chr15 27761631 27761901 + 2 NA intron (NM_001300984, intron 22 of 22) L1MDa|LINE|L1 337549 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 332-263 chr2 123899862 123900110 + 2 NA Intergenic L1MA4|LINE|L1 125188 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 527-159 chr21 29720036 29720322 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -27996 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 357-391 chr6 68235004 68235218 + 2 NA intron (NR_125854, intron 3 of 3) MER96B|DNA|hAT-Tip100 94788 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 163-97 chr4 77274728 77274852 + 2 NA Intergenic Intergenic 117583 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 156-31 chr13 91251396 91251539 + 2 NA Intergenic Intergenic -39769 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 148-59 chr3 175839959 175840099 + 2 NA Intergenic Intergenic -63696 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 319-230 chr2 17275342 17275647 + 2 NA Intergenic Intergenic 242946 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 314-335 chr20 9448067 9448251 + 2 NA intron (NM_000933, intron 28 of 35) intron (NM_000933, intron 28 of 35) -66199 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 314-62 chr10 29717997 29718204 + 2 NA intron (NM_001323599, intron 1 of 38) AluSc8|SINE|Alu 17701 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 512-164 chr3 54064713 54065099 + 2 NA Intergenic MIRb|SINE|MIR -57646 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 524-58 chr13 101739072 101739466 + 2 NA intron (NM_175929, intron 3 of 4) L2c|LINE|L2 177376 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 399-271 chr6 132042425 132042646 + 2 NA Intergenic Intergenic 72728 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 277-87 chr12 12068221 12068475 + 2 NA intron (NM_001370268, intron 2 of 6) intron (NM_001370268, intron 2 of 6) -2591 NM_138723 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 527-221 chr6 61923034 61923420 + 2 NA intron (NR_146874, intron 4 of 13) L1MEc|LINE|L1 349097 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 404-207 chr3 19302551 19302939 + 2 NA intron (NM_144633, intron 3 of 15) L3b|LINE|CR1 12186 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 326-334 chr3 67365962 67366227 + 2 NA intron (NM_001177599, intron 10 of 10) intron (NM_001177599, intron 10 of 10) 140630 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 318-287 chr2 126357109 126357322 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -239230 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 208-182 chr4 37161437 37161641 + 2 NA Intergenic Intergenic 80452 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 420-227 chr5 43220045 43220288 + 2 NA intron (NR_072980, intron 1 of 3) L1MB8|LINE|L1 27314 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 286-388 chr6 52332961 52333165 + 2 NA Intergenic AluJo|SINE|Alu -29088 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 486-31 chr10 61052771 61053165 + 2 NA Intergenic Intergenic 36693 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 557-12 chr1 227647097 227647479 + 2 NA intron (NM_178549, intron 3 of 3) intron (NM_178549, intron 3 of 3) 50419 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 382-434 chr9 35195564 35195816 + 2 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 33681 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 396-48 chr10 54593077 54593363 + 2 NA intron (NR_134503, intron 2 of 5) L1M4|LINE|L1 14737 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 281-416 chr7 54920970 54921125 + 2 NA Intergenic Intergenic -97970 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 279-121 chr15 92847540 92847755 + 2 NA Intergenic MLT2C1|LTR|ERVL -35196 NR_037600 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 318-318 chr20 42228078 42228287 + 2 NA intron (NM_133170, intron 16 of 31) MADE1|DNA|TcMar-Mariner -457301 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 336-200 chr16 73451246 73451414 + 2 NA Intergenic Intergenic 64525 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 256-461 chrX 5785653 5785864 + 2 NA Intergenic Intergenic -440600 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 489-245 chr7 121511375 121511729 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -115184 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 281-175 chr18 33339243 33339405 + 2 NA intron (NM_001308126, intron 9 of 23) L1ME3Cz|LINE|L1 101247 NM_001371121 207-222 chr4 78072708 78072859 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 15213 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 133-33 chr2 49216683 49216769 + 2 NA Intergenic Intergenic -62199 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 254-208 chr2 198490033 198490216 + 2 NA Intergenic L1MC3|LINE|L1 -115027 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 553-74 chr16 26058907 26059359 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 33896 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 342-257 chr2 147626270 147626455 + 2 NA Intergenic Intergenic -218155 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 396-101 chr14 22445239 22445565 + 2 NA intron (NR_148361, intron 2 of 4) Tigger19a|DNA|TcMar-Tigger -12649 NR_148362 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 296-478 chr8 113654324 113654489 + 2 NA Intergenic L1M5|LINE|L1 -217467 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 223-332 chr8 13756629 13756828 + 2 NA Intergenic L1MEc|LINE|L1 127038 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 362-176 chr16 7409415 7409634 + 2 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 76679 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 397-309 chr7 62857020 62857355 + 2 NA Intergenic ALR/Alpha|Satellite|centr 446869 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 392-222 chr4 27301663 27301987 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 84346 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 204-42 chr11 62033997 62034174 + 2 NA Intergenic Intergenic -66451 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 191-128 chr22 26199577 26199718 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 30173 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 433-223 chr5 52407761 52408172 + 2 NA Intergenic Intergenic -379950 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 551-48 chr14 42540040 42540562 + 2 NA Intergenic Intergenic 933445 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 342-92 chr11 40714834 40715030 + 2 NA intron (NM_020929, intron 1 of 4) L1M5|LINE|L1 -421802 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 228-270 chr5 94464249 94464457 + 2 NA intron (NM_001145678, intron 11 of 20) intron (NM_001145678, intron 11 of 20) 154251 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 240-81 chr11 72916115 72916270 + 2 NA intron (NM_014824, intron 9 of 19) L1PA12|LINE|L1 101781 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 532-132 chr2 146701617 146702102 + 2 NA Intergenic L1MA1|LINE|L1 114802 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 402-353 chr8 128145881 128146204 + 2 NA Intergenic Intergenic -4074 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 495-71 chr15 92411412 92411893 + 2 NA intron (NM_001330416, intron 1 of 4) MIR3|SINE|MIR 17765 NM_001330416 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 546-99 chr2 14484953 14485346 + 2 NA Intergenic L1PA13|LINE|L1 -84191 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 367-134 chr14 98857551 98857754 + 2 NA Intergenic Intergenic 146039 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 467-228 chr5 89701476 89701886 + 2 NA Intergenic AluJr|SINE|Alu 315039 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 372-263 chr2 167345635 167345912 + 2 NA Intergenic L2c|LINE|L2 158401 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 323-402 chr5 20411730 20411931 + 2 NA intron (NM_001349558, intron 1 of 15) L1PA17|LINE|L1 106279 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 169-107 chr6 53087759 53087856 + 2 NA intron (NM_033481, intron 7 of 12) MER101-int|LTR|ERV1 16834 NM_012347 26268 Hs.216653 NM_012347 ENSG00000112146 FBXO9 FBX9|NY-REN-57|VCIA1|dJ341E18.2 F-box protein 9 protein-coding 364-19 chr1 94582522 94582826 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 38972 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 271-459 chr8 127084221 127084417 + 2 NA non-coding (NR_109833, exon 1 of 1) non-coding (NR_109833, exon 1 of 1) -2098 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 248-285 chr4 81691145 81691382 + 2 NA Intergenic Intergenic -219356 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 318-192 chr16 17966309 17966477 + 2 NA Intergenic Intergenic 366269 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 274-73 chr11 59800242 59800434 + 2 NA intron (NM_004177, intron 10 of 10) MIRc|SINE|MIR 10440 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 436-78 chr13 97148069 97148329 + 2 NA Intergenic Intergenic 31423 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 210-231 chr5 119699647 119699811 + 2 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 70170 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 200-219 chr5 100224695 100224858 + 2 NA Intergenic Intergenic 163478 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 264-325 chr5 68375570 68375771 + 2 NA Intergenic Intergenic 83093 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 439-210 chr4 80114747 80114984 + 2 NA Intergenic L1MA4|LINE|L1 -41393 NM_001286780 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 159-88 chr7 39906178 39906291 + 2 NA Intergenic L1MCa|LINE|L1 43185 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 759-57 chr5 58379651 58380385 + 2 NA Intergenic MER41-int|LTR|ERV1 80068 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 599-115 chr6 54228438 54228863 + 2 NA intron (NM_138569, intron 10 of 12) intron (NM_138569, intron 10 of 12) -79791 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 133-69 chr5 179007772 179007870 + 2 NA Intergenic Tigger9a|DNA|TcMar-Tigger -12501 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 128-31 chr2 107019701 107019797 + 2 NA Intergenic MIRc|SINE|MIR -132640 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 416-196 chr2 236468688 236469037 + 2 NA intron (NR_073043, intron 5 of 19) intron (NR_073043, intron 5 of 19) 34835 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 507-198 chr5 45552723 45553130 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 143454 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 459-191 chr3 95255771 95256114 + 2 NA Intergenic Intergenic 317679 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 331-56 chr10 71021300 71021574 + 2 NA Intergenic HERVL-int|LTR|ERVL 82384 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 311-297 chr20 17672589 17672882 + 2 NA intron (NM_004587, intron 1 of 24) L1ME3A|LINE|L1 9507 NM_001365613 6238 Hs.472213 NM_004587 ENSG00000125844 RRBP1 ES/130|ES130|RRp|hES ribosome binding protein 1 protein-coding 138-49 chr3 5052587 5052703 + 2 NA Intergenic Intergenic -69647 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 244-265 chr4 71385608 71385759 + 2 NA intron (NM_003759, intron 3 of 22) HAL1|LINE|L1 46630 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 247-404 chr8 84183527 84183676 + 2 NA 5' UTR (NM_173848, exon 1 of 9) 5' UTR (NM_173848, exon 1 of 9) 327 NM_173848 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 468-250 chr5 59989035 59989401 + 2 NA intron (NM_001165899, intron 2 of 16) Tigger3a|DNA|TcMar-Tigger -95492 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 296-374 chr5 82551797 82552063 + 2 NA Intergenic Intergenic 272468 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 369-147 chr16 26673210 26673516 + 2 NA Intergenic Intergenic -393564 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 347-363 chr4 173272954 173273241 + 2 NA intron (NM_017423, intron 2 of 11) intron (NM_017423, intron 2 of 11) 4937 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 417-210 chr5 3538830 3539061 + 2 NA Intergenic Intergenic -2851 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 299-194 chr2 20556301 20556463 + 2 NA Intergenic HAL1ME|LINE|L1 36166 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 202-42 chr11 81686804 81686937 + 2 NA Intergenic L1MC3|LINE|L1 203966 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 253-192 chr2 114770193 114770339 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 63282 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 264-431 chr8 131451427 131451608 + 2 NA Intergenic L2|LINE|L2 -410608 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 456-66 chr12 75285895 75286279 + 2 NA intron (NR_149158, intron 7 of 9) intron (NR_149158, intron 7 of 9) 44237 NM_001286547 84698 Hs.733835 NM_032606 ENSG00000180881 CAPS2 UG0636c06 calcyphosine 2 protein-coding 331-460 chr6 67800526 67800739 + 2 NA Intergenic AluY|SINE|Alu -254719 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 362-335 chr5 11827589 11827802 + 2 NA intron (NM_001288717, intron 1 of 20) L1ME1|LINE|L1 76751 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 533-97 chr2 44911872 44912285 + 2 NA Intergenic L1MEd|LINE|L1 26810 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 356-198 chr17 70027698 70027894 + 2 NA Intergenic L1PREC2|LINE|L1 -23475 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 499-110 chr2 18199913 18200405 + 2 NA Intergenic Intergenic 321492 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 346-210 chr18 46592998 46593242 + 2 NA intron (NM_144612, intron 10 of 39) intron (NM_144612, intron 10 of 39) -33808 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 328-144 chr14 44727099 44727290 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 71932 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 242-423 chr9 13790807 13791013 + 2 NA Intergenic AluSz|SINE|Alu -137061 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 313-22 chr1 118604307 118604553 + 2 NA Intergenic L1MC4a|LINE|L1 383913 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 235-162 chr2 31902018 31902158 + 2 NA intron (NM_001137602, intron 4 of 7) FLAM_A|SINE|Alu -98108 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 526-93 chr17 34436204 34436696 + 2 NA Intergenic Intergenic -73217 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 203-124 chr2 143942657 143942790 + 2 NA intron (NR_110237, intron 2 of 2) intron (NR_110237, intron 2 of 2) 5656 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 368-492 chrX 62727366 62727631 + 2 NA Intergenic ALR/Alpha|Satellite|centr 623834 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 484-62 chr14 52428028 52428321 + 2 NA Intergenic L2c|LINE|L2 113862 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 222-133 chr16 76187956 76188100 + 2 NA Intergenic L1P4a|LINE|L1 -89373 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 319-468 chr6 104213213 104213428 + 2 NA Intergenic Intergenic 646226 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 224-20 chr1 211065208 211065363 + 2 NA intron (NM_002238, intron 5 of 10) L1MA8|LINE|L1 68089 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 364-202 chr2 31737531 31737864 + 2 NA Intergenic Intergenic 66283 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 342-265 chr2 196085802 196086054 + 2 NA Intergenic Intergenic -17091 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 240-238 chr2 151873136 151873309 + 2 NA intron (NM_000726, intron 5 of 13) L2a|LINE|L2 -44801 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 479-65 chr14 69886601 69886938 + 2 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) 7353 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 399-277 chr7 25713748 25714002 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 37157 NR_157815 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 185-158 chr4 188286600 188286747 + 2 NA Intergenic Intergenic 147232 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 344-95 chr11 127088822 127089136 + 2 NA intron (NR_120578, intron 1 of 2) L1PB1|LINE|L1 21977 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 490-319 chrX 64034989 64035476 + 2 NA Intergenic L1M2a|LINE|L1 170476 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 303-436 chr7 123217711 123217949 + 2 NA Intergenic L1MB7|LINE|L1 -17859 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 604-177 chr9 132868779 132869214 + 2 NA intron (NM_001317958, intron 1 of 12) AluSz|SINE|Alu -9348 NM_001316898 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 316-207 chr16 82669522 82669689 + 2 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -19326 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 337-167 chr15 33276505 33276735 + 2 NA Intergenic L1MA9|LINE|L1 -29065 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 244-281 chr4 159888073 159888275 + 2 NA Intergenic Intergenic -110390 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 351-17 chr1 166021509 166021687 + 2 NA Intergenic Intergenic 113677 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 479-163 chr4 65300699 65301031 + 2 NA Intergenic Intergenic -296365 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 351-410 chr6 36198523 36198815 + 2 NA intron (NM_015695, intron 1 of 12) intron (NM_015695, intron 1 of 12) 1925 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 175-162 chr8 59599763 59599906 + 2 NA Intergenic Intergenic 480624 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 212-91 chr13 36106000 36106151 + 2 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 25307 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 160-89 chr5 65117581 65117715 + 2 NA Intergenic L1M5|LINE|L1 348718 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 322-94 chr11 79892834 79893129 + 2 NA Intergenic Intergenic -451951 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 217-350 chr7 52321690 52321852 + 2 NA Intergenic Intergenic -713862 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 445-180 chr3 141160257 141160548 + 2 NA Intergenic L1PA14|LINE|L1 -71423 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 242-173 chr2 51559677 51559853 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 527164 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 195-129 chr20 54376575 54376703 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -98954 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 290-163 chr16 78187796 78187986 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 88237 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 481-218 chr4 62019387 62019779 + 2 NA intron (NM_001371343, intron 20 of 23) intron (NM_001371343, intron 20 of 23) 142182 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 296-414 chr6 121975661 121975872 + 2 NA Intergenic HAL1M8|LINE|L1 -423785 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 326-443 chr6 15894201 15894445 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -231265 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 314-146 chr13 59513392 59513556 + 2 NA Intergenic LTR17|LTR|ERV1 -499244 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 472-62 chr12 60380025 60380418 + 2 NA Intergenic L1PA10|LINE|L1 690851 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 182-166 chr8 62778321 62778473 + 2 NA intron (NM_001304533, intron 4 of 6) L1MA3|LINE|L1 -199464 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 184-184 chr9 85017880 85018038 + 2 NA intron (NM_001018064, intron 16 of 17) intron (NM_001018064, intron 16 of 17) 312058 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 486-308 chr9 80734571 80734902 + 2 NA Intergenic Intergenic 759713 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 862-10 chr12 59078927 59079600 + 2 NA Intergenic Intergenic -158725 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 203-113 chr2 80758751 80758887 + 2 NA Intergenic L1MD1|LINE|L1 445440 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 264-173 chr18 8857879 8858102 + 2 NA Intergenic L1ME2z|LINE|L1 140609 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 243-452 chr8 103628105 103628262 + 2 NA intron (NM_001348497, intron 1 of 22) L1MDa|LINE|L1 -126273 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 573-209 chr9 24930137 24930517 + 2 NA Intergenic L1MD2|LINE|L1 -384430 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 334-17 chr1 82351598 82351892 + 2 NA Intergenic L2c|LINE|L2 549292 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 700-55 chr20 47102933 47103455 + 2 NA intron (NM_172110, intron 9 of 13) L1MB7|LINE|L1 -63773 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 344-358 chr4 66291026 66291242 + 2 NA Intergenic L1PA16|LINE|L1 14310 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 968-19 chr4 173626489 173627243 + 2 NA Intergenic L1M2|LINE|L1 96408 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 510-32 chr10 89804549 89804899 + 2 NA Intergenic L1MA9|LINE|L1 -24769 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 331-245 chr2 14297202 14297487 + 2 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 103614 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 300-349 chr5 18570105 18570347 + 2 NA Intergenic Intergenic 762952 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 172-107 chr5 121698447 121698611 + 2 NA Intergenic Intergenic -153353 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 388-268 chr5 13074405 13074621 + 2 NA Intergenic L1PA8|LINE|L1 -41627 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 304-370 chr4 22418167 22418390 + 2 NA intron (NM_145290, intron 12 of 18) intron (NM_145290, intron 12 of 18) -78612 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 224-127 chr18 67682963 67683135 + 2 NA intron (NR_033921, intron 1 of 4) L1PB4|LINE|L1 131773 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 429-325 chr9 76879094 76879428 + 2 NA intron (NM_001308048, intron 1 of 17) MER103C|DNA|hAT-Charlie 26826 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 533-170 chr5 2407195 2407609 + 2 NA Intergenic AluSz|SINE|Alu -95201 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 410-123 chr2 6618036 6618292 + 2 NA Intergenic Intergenic 15623 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 634-14 chr10 18983278 18983787 + 2 NA Intergenic MER65C|LTR|ERV1 -65269 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 289-447 chr7 119901336 119901505 + 2 NA intron (NR_131960, intron 1 of 4) L1MA3|LINE|L1 5955 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 345-546 chr8 139465424 139465598 + 2 NA Intergenic Intergenic 237612 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 329-149 chr14 20749842 20750054 + 2 NA Intergenic Intergenic 4061 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 262-352 chr5 155555622 155555815 + 2 NA Intergenic L1M5|LINE|L1 541963 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 479-180 chr5 8238462 8238863 + 2 NA Intergenic Intergenic 218902 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 264-146 chr15 70006109 70006324 + 2 NA Intergenic Intergenic 73252 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 228-57 chr11 42098737 42098911 + 2 NA Intergenic LTR16A|LTR|ERVL -13366 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 233-246 chr3 167163055 167163239 + 2 NA Intergenic Intergenic 217136 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 240-385 chr6 127024272 127024437 + 2 NA Intergenic Intergenic -94317 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 315-352 chr4 144389492 144389754 + 2 NA Intergenic L1MEf|LINE|L1 -248905 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 431-236 chr5 159013467 159013729 + 2 NA intron (NM_182708, intron 5 of 14) L2c|LINE|L2 84358 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 814-53 chr6 103064121 103064661 + 2 NA Intergenic L1MA4|LINE|L1 1665406 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 498-175 chr3 98109771 98110128 + 2 NA Intergenic Intergenic -22749 NM_001005338 26341 Hs.537383 NM_001005338 ENSG00000231192 OR5H1 HSHTPCRX14|HTPCRX14 olfactory receptor family 5 subfamily H member 1 protein-coding 350-148 chr14 96794025 96794265 + 2 NA Intergenic Intergenic -3237 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 532-180 chr4 12314227 12314665 + 2 NA Intergenic L1MB7|LINE|L1 90995 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 294-92 chr12 126174447 126174710 + 2 NA Intergenic L1MC3|LINE|L1 78586 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 123-56 chr8 101280415 101280497 + 2 NA Intergenic Intergenic -74392 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 626-106 chr4 116672801 116673215 + 2 NA Intergenic Intergenic 373283 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 233-132 chr17 62825064 62825256 + 2 NA intron (NR_135634, intron 1 of 1) intron (NR_135634, intron 1 of 1) 16658 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 343-310 chr21 14710267 14710451 + 2 NA Intergenic Plat_L3|LINE|CR1 -67252 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 574-143 chr5 159377539 159378041 + 2 NA Intergenic L1PB2|LINE|L1 46272 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 145-67 chr5 30285410 30285515 + 2 NA Intergenic L1M2|LINE|L1 404902 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 145-50 chr2 152976016 152976128 + 2 NA Intergenic L1MD|LINE|L1 257435 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 413-130 chr19 42810922 42811245 + 2 NA Intergenic Intergenic -10780 NR_036584 100289650 Hs.680622 NR_036584 ENSG00000225877 PSG8-AS1 - PSG8 antisense RNA 1 ncRNA 1177-7 chr5 155467490 155468309 + 2 NA Intergenic Intergenic 454144 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 499-280 chr9 13923872 13924323 + 2 NA Intergenic Intergenic -3874 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 181-158 chr8 83014834 83014980 + 2 NA Intergenic Intergenic 102803 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 330-431 chr5 110287303 110287591 + 2 NA Intergenic L1MC4a|LINE|L1 226468 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 490-76 chr12 117790177 117790657 + 2 NA intron (NM_173598, intron 3 of 19) MER4A|LTR|ERV1 178573 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 489-237 chr7 36832672 36833047 + 2 NA Intergenic Intergenic 86573 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 266-86 chr12 29061381 29061537 + 2 NA Intergenic L1MC1|LINE|L1 -87819 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 491-239 chr7 17657831 17658277 + 2 NA Intergenic L1MEc|LINE|L1 -99145 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 379-379 chr9 85175977 85176303 + 2 NA Intergenic AluSx|SINE|Alu 470239 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 404-55 chr10 118562578 118562912 + 2 NA Intergenic L1MC4|LINE|L1 32903 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 288-155 chr18 7780378 7780614 + 2 NA intron (NM_002845, intron 2 of 30) MIR|SINE|MIR 213180 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 150-9 chr10 10842497 10842588 + 2 NA intron (NM_001326327, intron 1 of 14) L1MC3|LINE|L1 43817 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 251-281 chr5 2670266 2670494 + 2 NA Intergenic Intergenic -42211 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 333-89 chr11 62295450 62295646 + 2 NA TTS (NM_206998) TTS (NM_206998) 3527 NM_206998 404552 Hs.473247 NM_206998 ENSG00000197745 SCGB1D4 IIS secretoglobin family 1D member 4 protein-coding 290-288 chr3 102863585 102863743 + 2 NA Intergenic Intergenic 428649 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 427-163 chr3 104473242 104473511 + 2 NA Intergenic L1M4|LINE|L1 -893337 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 350-43 chr10 44333012 44333247 + 2 NA Intergenic Intergenic 40379 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 294-257 chr20 18664148 18664331 + 2 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) 34469 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 467-61 chr12 7061653 7062066 + 2 NA 5' UTR (NM_201442, exon 2 of 12) 5' UTR (NM_201442, exon 2 of 12) 1141 NM_001346850 716 Hs.458355 NM_001734 ENSG00000182326 C1S EDSPD2 complement C1s protein-coding 262-143 chr15 56577784 56577972 + 2 NA Intergenic MER65-int|LTR|ERV1 -112741 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 457-242 chr7 104094528 104094853 + 2 NA Intergenic Intergenic -105032 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 408-243 chr4 93440448 93440752 + 2 NA intron (NM_001286838, intron 9 of 14) intron (NM_001286838, intron 9 of 14) -388153 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 142-27 chr15 50041038 50041142 + 2 NA intron (NR_073597, intron 5 of 26) MIRb|SINE|MIR 72289 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 162-42 chr17 60357480 60357629 + 2 NA intron (NM_032582, intron 1 of 33) intron (NM_032582, intron 1 of 33) 34579 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 220-127 chr16 83746353 83746509 + 2 NA intron (NM_001220489, intron 9 of 12) MLT1D|LTR|ERVL-MaLR 57545 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 287-67 chr10 85907855 85908048 + 2 NA intron (NM_017551, intron 5 of 15) L1ME1|LINE|L1 330220 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 268-407 chr8 105101111 105101289 + 2 NA Intergenic Intergenic -217238 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 335-300 chr20 42940978 42941157 + 2 NA intron (NM_133170, intron 1 of 31) AluSx4|SINE|Alu -27676 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 325-145 chr13 34105562 34105861 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -242332 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 180-16 chr10 53310283 53310445 + 2 NA Intergenic Intergenic -538664 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 900 chr1 170270954 170271661 + 2 NA TTS (NR_026957) TTS (NR_026957) 12901 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 288-409 chr7 53080768 53080933 + 2 NA Intergenic L1MD2|LINE|L1 45217 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 716-80 chr6 154912987 154913436 + 2 NA Intergenic Intergenic 59851 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 248-177 chr2 35465280 35465432 + 2 NA Intergenic Intergenic -6049 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 256-6 chr1 41649291 41649488 + 2 NA intron (NM_001127714, intron 1 of 7) MER5A|DNA|hAT-Charlie -164706 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 170-57 chr16 77996363 77996521 + 2 NA Intergenic Intergenic -26106 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 283-190 chr18 4085528 4085756 + 2 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 123289 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 330-272 chr2 82396113 82396404 + 2 NA Intergenic L1M1|LINE|L1 -460545 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 289-390 chr5 126156329 126156484 + 2 NA Intergenic L1M5|LINE|L1 -23171 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 292-182 chr18 35306625 35306809 + 2 NA non-coding (NR_024565, exon 3 of 3) non-coding (NR_024565, exon 3 of 3) 16445 NR_024565 10778 Hs.314246 NM_006629 ENSG00000257267 ZNF271P CT-ZFP48|HZF7|ZNF-EB|ZNF-dp|ZNF271|ZNFEB zinc finger protein 271, pseudogene pseudo 320-81 chr11 41873718 41873955 + 2 NA Intergenic L2b|LINE|L2 159268 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 374-246 chr3 77245385 77245718 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 147539 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 414-15 chr1 152198826 152199156 + 2 NA Intergenic L1ME3Cz|LINE|L1 25205 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 414-362 chrX 39366712 39367015 + 2 NA TTS (NR_110385) TTS (NR_110385) 24911 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 526-242 chr8 35537911 35538396 + 2 NA intron (NM_080872, intron 1 of 16) L2c|LINE|L2 -6239 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 344-269 chr20 7560659 7560837 + 2 NA Intergenic L1MA4A|LINE|L1 189140 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 240-193 chr18 70731920 70732084 + 2 NA Intergenic Intergenic -81048 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 430-68 chr12 77672105 77672437 + 2 NA Intergenic L1PB1|LINE|L1 -158623 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 336-598 chrX 81727058 81727284 + 2 NA Intergenic L1PA14|LINE|L1 525069 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 486-150 chr2 124293126 124293593 + 2 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 268072 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 283-415 chr7 45624459 45624735 + 2 NA intron (NM_001281768, intron 5 of 9) intron (NM_001281768, intron 5 of 9) 50229 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 443-294 chr8 126280093 126280418 + 2 NA Intergenic Intergenic -45240 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 128-27 chr18 74767461 74767537 + 2 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 136536 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 471-100 chr16 78369917 78370254 + 2 NA intron (NM_001291997, intron 4 of 7) AluSx|SINE|Alu 270431 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 516-53 chr12 88546771 88547218 + 2 NA intron (NM_000899, intron 1 of 9) intron (NM_000899, intron 1 of 9) 33477 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 281-260 chr20 51086898 51087085 + 2 NA Intergenic Intergenic -63884 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 460-6 chr1 108341367 108341802 + 2 NA Intergenic L1PA15|LINE|L1 -97503 NM_001143989 148545 Hs.511849 NM_152488 ENSG00000196427 NBPF4 - NBPF member 4 protein-coding 363-23 chr1 177709544 177709780 + 2 NA intron (NR_110722, intron 3 of 3) intron (NR_110722, intron 3 of 3) 9138 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 526-173 chr3 103883672 103884163 + 2 NA Intergenic Intergenic -359801 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 353-121 chr12 120953526 120953831 + 2 NA Intergenic AluJo|SINE|Alu 18614 NR_024345 283460 Hs.612351 NR_024345 ENSG00000241388 HNF1A-AS1 C12orf27|HAS1|NCRNA00262 HNF1A antisense RNA 1 ncRNA 291-418 chr7 68609712 68609882 + 2 NA Intergenic Intergenic 589544 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 317-465 chr7 116264980 116265223 + 2 NA Intergenic Intergenic 21563 NR_130923 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 420-148 chr2 125372404 125372699 + 2 NA Intergenic Intergenic 745434 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 323-416 chr5 74975119 74975410 + 2 NA Intergenic MamRep1879|DNA|hAT-Tip100? 77294 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 326-110 chr11 115870790 115870973 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -110681 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 346-139 chr14 72205888 72206072 + 2 NA intron (NM_001370288, intron 2 of 16) L1ME3G|LINE|L1 272453 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 226-129 chr17 70179851 70179972 + 2 NA 3' UTR (NM_000891, exon 2 of 2) 3' UTR (NM_000891, exon 2 of 2) 10376 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 332-385 chr4 102005049 102005329 + 2 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 191347 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 487-228 chr5 46183189 46183548 + 2 NA Intergenic ALR/Alpha|Satellite|centr -486988 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 253-302 chr4 104308553 104308738 + 2 NA Intergenic L1MC3|LINE|L1 -182320 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 716-2 chr1 76807142 76807539 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -28073 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 314-108 chr11 111370642 111370942 + 2 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 8483 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 332-48 chr10 13255897 13256144 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -21646 NM_145314 221044 Hs.112998 NM_145314 ENSG00000165623 UCMA C10orf49|GRP|GRP/UCMA upper zone of growth plate and cartilage matrix associated protein-coding 167-119 chrX 96325242 96325335 + 2 NA Intergenic Intergenic 12614 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 811-52 chrX 69365084 69365829 + 2 NA Intergenic Intergenic -139779 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 562-54 chr13 47478319 47478848 + 2 NA Intergenic Intergenic 454039 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 243-317 chr4 36544151 36544309 + 2 NA intron (NR_149124, intron 3 of 4) L1MEd|LINE|L1 97670 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 336-8 chr1 34391365 34391559 + 2 NA Intergenic L1MDa|LINE|L1 214555 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 226-261 chr4 126327223 126327398 + 2 NA Intergenic Intergenic 820051 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 247-61 chr11 81505763 81505952 + 2 NA Intergenic Intergenic 384979 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 236-293 chr5 109244866 109245045 + 2 NA intron (NR_149040, intron 3 of 3) ERV3-16A3_I-int|LTR|ERVL 81414 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 318-582 chr9 106263913 106264140 + 2 NA Intergenic L1ME1|LINE|L1 -336902 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 355-112 chr11 114568971 114569311 + 2 NA Intergenic Intergenic -9260 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 216-236 chr3 153753037 153753251 + 2 NA intron (NR_146713, intron 1 of 6) intron (NR_146713, intron 1 of 6) 9382 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 314-585 chr8 124941667 124941913 + 2 NA promoter-TSS (NR_027321) promoter-TSS (NR_027321) -218 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 348-533 chr8 123561234 123561463 + 2 NA Intergenic Intergenic -20142 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 151-16 chr10 129024074 129024189 + 2 NA Intergenic Intergenic 111298 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 306-38 chr1 188995794 188996055 + 2 NA Intergenic L1MA4|LINE|L1 1480086 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 372-293 chr21 23747941 23748277 + 2 NA Intergenic AluSc8|SINE|Alu -363274 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 365-209 chr2 153259610 153259950 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 218982 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 301-377 chr5 135175178 135175328 + 2 NA intron (NR_161235, intron 3 of 5) intron (NR_161235, intron 3 of 5) 72924 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 348-166 chr16 8326800 8327086 + 2 NA Intergenic AluSx|SINE|Alu 262895 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 257-96 chr12 132983544 132983797 + 2 NA Intergenic L1MA10|LINE|L1 -2697 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 360-34 chr10 46239733 46240016 + 2 NA intron (NR_103828, intron 2 of 2) L1M2|LINE|L1 29734 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 325-581 chr9 122676096 122676398 + 2 NA TTS (NM_001005234) TTS (NM_001005234) 1117 NM_001005234 26735 Hs.626839 NM_001005234 ENSG00000171481 OR1L3 OR9-28|OR9-D olfactory receptor family 1 subfamily L member 3 protein-coding 338-290 chr2 233923607 233923875 + 2 NA intron (NM_024080, intron 1 of 25) intron (NM_024080, intron 1 of 25) 6368 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 400-218 chr3 81912855 81913187 + 2 NA Intergenic Intergenic -73121 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 188-85 chr19 7218347 7218475 + 2 NA intron (NM_001079817, intron 2 of 20) MIRc|SINE|MIR 76003 NM_000208 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 298-69 chr11 29949279 29949489 + 2 NA Intergenic Intergenic 33009 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 318-282 chr2 122500053 122500293 + 2 NA Intergenic L1MC|LINE|L1 573308 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 327-398 chr5 68207338 68207592 + 2 NA Intergenic L1ME1|LINE|L1 -8291 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 506-16 chr1 158916661 158916995 + 2 NA Intergenic Intergenic -14724 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 259-131 chr15 25008299 25008445 + 2 NA intron (NR_146177, intron 20 of 147) L1M4c|LINE|L1 21447 NR_001292 338427 NR_001292 ENSG00000239014 SNORD108 HBII-437 small nucleolar RNA, C/D box 108 snoRNA 328-364 chr3 127333879 127334065 + 2 NA intron (NR_110147, intron 3 of 4) L1MA8|LINE|L1 -45926 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 557-170 chr6 55672694 55673121 + 2 NA Intergenic Intergenic -93693 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 282-28 chr1 229797626 229797873 + 2 NA Intergenic Intergenic 88069 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 354-272 chr21 32170220 32170558 + 2 NA Intergenic L1MB7|LINE|L1 -84094 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 208-165 chr3 66297706 66297884 + 2 NA intron (NM_001350992, intron 4 of 8) MER58A|DNA|hAT-Charlie 76792 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 359-199 chr18 45578470 45578687 + 2 NA intron (NM_001371319, intron 5 of 23) intron (NM_001371319, intron 5 of 23) -36898 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 333-289 chr2 233243467 233243733 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -7971 NM_198890 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 296-323 chr4 14194070 14194359 + 2 NA Intergenic Intergenic 82246 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 394-212 chr3 45868403 45868722 + 2 NA intron (NM_001276379, intron 2 of 9) intron (NM_001276379, intron 2 of 9) -17942 NM_001256369 10803 Hs.225946 NM_006641 ENSG00000173585 CCR9 CC-CKR-9|CDw199|GPR-9-6|GPR28 C-C motif chemokine receptor 9 protein-coding 308-66 chr10 88594468 88594772 + 2 NA intron (NM_001010939, intron 5 of 10) intron (NM_001010939, intron 5 of 10) 7858 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 263-213 chr2 124676809 124676949 + 2 NA intron (NM_130773, intron 13 of 23) L1M4|LINE|L1 651592 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 345-274 chr2 116370598 116370878 + 2 NA Intergenic Intergenic 1026923 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 198-163 chr3 79630513 79630684 + 2 NA intron (NM_002941, intron 1 of 30) L1PB4|LINE|L1 122711 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 230-330 chr6 157088770 157088923 + 2 NA intron (NM_020732, intron 6 of 19) intron (NM_020732, intron 6 of 19) 52419 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 177-143 chr6 161016411 161016545 + 2 NA intron (NM_005922, intron 1 of 26) L1MC5a|LINE|L1 24709 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 243-373 chr5 158876376 158876603 + 2 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 221467 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 297-85 chr11 99479553 99479719 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -76509 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 358-197 chr2 38561164 38561470 + 2 NA TTS (NM_138394) TTS (NM_138394) 41611 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 243-455 chr8 111558864 111559050 + 2 NA Intergenic Intergenic 182318 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 223-283 chr5 95022657 95022817 + 2 NA intron (NM_024717, intron 1 of 22) MER117|DNA|hAT-Charlie 59129 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 333-413 chr4 133874533 133874843 + 2 NA Intergenic Intergenic 327101 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 223-41 chr10 82022427 82022577 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 144815 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 481-169 chr20 7899773 7900144 + 2 NA intron (NM_017545, intron 4 of 7) intron (NM_017545, intron 4 of 7) 40500 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 388-348 chr8 114118453 114118769 + 2 NA Intergenic Intergenic -681672 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 256-444 chr9 11362926 11363165 + 2 NA Intergenic L1ME1|LINE|L1 749839 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 455-233 chr5 149087907 149088294 + 2 NA intron (NR_122044, intron 2 of 2) L1ME3G|LINE|L1 24783 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 545-226 chr7 77823947 77824395 + 2 NA intron (NM_001366088, intron 1 of 11) intron (NM_001366088, intron 1 of 11) -15957 NM_020432 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 428-186 chr3 99202982 99203401 + 2 NA Intergenic Intergenic -301496 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 306-394 chr5 43827192 43827451 + 2 NA Intergenic L1M2|LINE|L1 -224091 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 257-426 chr8 129803883 129804096 + 2 NA Intergenic Intergenic -17365 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 317-240 chr2 102704019 102704311 + 2 NA intron (NM_003048, intron 9 of 11) intron (NM_003048, intron 9 of 11) 32723 NR_136173 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 376-137 chr17 43065176 43065412 + 2 NA intron (NR_027676, intron 16 of 22) intron (NR_027676, intron 16 of 22) 40063 NM_005440 8153 Hs.603111 NM_005440 ENSG00000108830 RND2 ARHN|RHO7|RhoN Rho family GTPase 2 protein-coding 575-97 chr2 232066001 232066471 + 2 NA intron (NR_046477, intron 5 of 18) L1ME1|LINE|L1 104523 NM_001257281 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 307-93 chr11 109136411 109136645 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -285662 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 496-85 chr14 62961019 62961463 + 2 NA intron (NM_139318, intron 6 of 10) L2c|LINE|L2 84217 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 679-119 chrX 99226596 99227112 + 2 NA Intergenic L1MD2|LINE|L1 1183419 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 208-149 chr20 45925133 45925300 + 2 NA Intergenic Intergenic -9467 NM_022104 63935 Hs.472856 NM_022104 ENSG00000100982 PCIF1 C20orf67|CAPAM|PPP1R121|hCAPAM|hPCIF1 PDX1 C-terminal inhibiting factor 1 protein-coding 217-95 chr12 118938411 118938588 + 2 NA Intergenic L3|LINE|CR1 -43042 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 446-52 chr10 105712813 105713132 + 2 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 107361 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 508-57 chr13 53252344 53252707 + 2 NA Intergenic Intergenic -100625 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 386-381 chr9 94859651 94859891 + 2 NA intron (NM_032823, intron 5 of 14) MIR|SINE|MIR 49809 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 594-74 chr2 151693912 151694413 + 2 NA intron (NM_001271208, intron 20 of 182) intron (NM_001271208, intron 20 of 182) 40314 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 307-392 chr5 122403399 122403594 + 2 NA intron (NR_131761, intron 2 of 12) intron (NR_131761, intron 2 of 12) 12407 NR_131761 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 486-200 chr3 42575623 42576002 + 2 NA intron (NM_001201572, intron 1 of 6) L1MD2|LINE|L1 -6028 NM_016305 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 152-25 chr14 51205031 51205171 + 2 NA Intergenic Intergenic -35146 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 315-270 chr20 6129167 6129470 + 2 NA Intergenic L1MC4a|LINE|L1 -5774 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 437-161 chr20 52772465 52772715 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 151752 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 301-419 chr7 46578759 46579025 + 2 NA Intergenic Intergenic 118230 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 365-138 chr16 26056684 26056888 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 31549 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 226-380 chr9 74453900 74454038 + 2 NA Intergenic Intergenic -43366 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 239-215 chr20 61719316 61719454 + 2 NA non-coding (NR_147702, exon 2 of 2) non-coding (NR_147702, exon 2 of 2) 363 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 264-26 chr1 232595712 232595929 + 2 NA Intergenic Intergenic -80212 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 366-128 chr14 65245276 65245583 + 2 NA Intergenic Intergenic -23082 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 618-132 chr8 107286952 107287406 + 2 NA intron (NM_001199859, intron 6 of 8) intron (NM_001199859, intron 6 of 8) 49336 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 441-153 chr3 27036874 27037211 + 2 NA Intergenic MIRb|SINE|MIR 179481 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 267-160 chr18 73292579 73292818 + 2 NA Intergenic Intergenic -28200 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 345-396 chr4 136213164 136213378 + 2 NA Intergenic L1PA13|LINE|L1 -299591 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 398-19 chr1 186539794 186540049 + 2 NA Intergenic L1M2|LINE|L1 -78807 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 235-238 chr3 135503355 135503526 + 2 NA Intergenic Intergenic -462288 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 312-397 chr4 188922001 188922240 + 2 NA Intergenic LTR27D|LTR|ERV1 145463 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 498-152 chr20 55684885 55685226 + 2 NA Intergenic Intergenic -257858 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 373-237 chr20 39544205 39544404 + 2 NA Intergenic LTR16|LTR|ERVL -319556 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 256-305 chr5 6230915 6231103 + 2 NA Intergenic Intergenic 106283 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 430-90 chr14 83834055 83834449 + 2 NA Intergenic MLT2D|LTR|ERVL 1191620 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 574-105 chr3 30487236 30487663 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -31419 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 326-390 chr4 177883663 177883924 + 2 NA intron (NR_108092, intron 1 of 1) intron (NR_108092, intron 1 of 1) 24143 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 347-539 chr9 9424768 9425036 + 2 NA intron (NM_002839, intron 8 of 45) MLT1H|LTR|ERVL-MaLR -374490 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 904-41 chr8 46565867 46566386 + 2 NA Intergenic L1PA8|LINE|L1 51517 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 258-72 chr11 95578462 95578702 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 211200 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 345-182 chr15 95315648 95315979 + 2 NA intron (NR_034095, intron 1 of 3) L1MB8|LINE|L1 11287 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 646-36 chr14 62643149 62643654 + 2 NA Intergenic L1MB1|LINE|L1 402057 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 412-236 chr4 71969048 71969326 + 2 NA Intergenic Intergenic -62617 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 421-242 chr5 81078635 81078905 + 2 NA intron (NM_006909, intron 5 of 26) intron (NM_006909, intron 5 of 26) -117863 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 419-28 chr10 37920295 37920516 + 2 NA Intergenic L1MCa|LINE|L1 55575 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 355-464 chr7 55355130 55355469 + 2 NA Intergenic MER31B|LTR|ERV1 -10149 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 722-56 chr4 47235492 47236104 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 204231 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 216-221 chr3 72216493 72216633 + 2 NA Intergenic LTR40b|LTR|ERVL 65306 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 508-151 chr3 109494098 109494431 + 2 NA non-coding (NR_109841, exon 5 of 5) non-coding (NR_109841, exon 5 of 5) 84274 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 588-30 chr12 106056142 106056684 + 2 NA Intergenic AluSx1|SINE|Alu 83620 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 270-385 chr8 86756990 86757246 + 2 NA Intergenic Intergenic -13443 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 485-284 chr8 78507480 78507925 + 2 NA Intergenic Intergenic -8638 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 168-62 chr2 144123554 144123666 + 2 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 87969 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 691-17 chr12 2509369 2509844 + 2 NA intron (NM_199460, intron 8 of 49).2 Tigger17a|DNA|TcMar-Tigger 162614 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 456-4 chr1 59276889 59277260 + 2 NA Intergenic MIR|SINE|MIR -19739 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 348-256 chr20 6668965 6669145 + 2 NA Intergenic L1MC2|LINE|L1 67081 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 389-361 chr8 82703375 82703713 + 2 NA Intergenic Intergenic -208560 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 392-356 chrX 37393404 37393764 + 2 NA intron (NM_000950, intron 2 of 4) L2b|LINE|L2 44220 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 244-5 chr1 42122591 42122825 + 2 NA Intergenic L1ME1|LINE|L1 -30702 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 229-50 chr10 121005678 121005852 + 2 NA Intergenic L1PA15-16|LINE|L1 154403 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 291-166 chr16 80517954 80518112 + 2 NA intron (NR_120307, intron 2 of 5) MER20B|DNA|hAT-Charlie -22701 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 217-161 chr18 65653595 65653752 + 2 NA Intergenic L2a|LINE|L2 -96579 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 450-183 chr22 47094977 47095288 + 2 NA intron (NM_001284305, intron 11 of 12) intron (NM_001284305, intron 11 of 12) -179090 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 374-427 chrX 70577379 70577652 + 2 NA intron (NM_001003811, intron 26 of 30) L1M7|LINE|L1 -121521 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 393-17 chr1 117651658 117651973 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 45767 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 210-116 chr2 1051470 1051640 + 2 NA intron (NM_018968, intron 1 of 16) MLT1F|LTR|ERVL-MaLR -100163 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 356-510 chr9 115644473 115644706 + 2 NA Intergenic Intergenic 99650 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 518-288 chr8 11202852 11203293 + 2 NA Intergenic Intergenic -1239 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 311-103 chr12 73552866 73553040 + 2 NA Intergenic Intergenic 393763 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 250-91 chr12 42766993 42767200 + 2 NA Intergenic MIRb|SINE|MIR 74880 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 354-347 chr4 127162772 127162958 + 2 NA Intergenic Intergenic -470092 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 372-350 chr4 24921144 24921339 + 2 NA intron (NM_173463, intron 1 of 12) MIR|SINE|MIR -8263 NM_001130726 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 325-390 chr4 54449013 54449272 + 2 NA Intergenic Intergenic 116250 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 408-201 chr22 43753359 43753568 + 2 NA intron (NM_198856, intron 4 of 29) intron (NM_198856, intron 4 of 29) 58842 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 177-170 chr9 80821427 80821559 + 2 NA Intergenic L1PA13|LINE|L1 846470 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 327-166 chr15 43215389 43215610 + 2 NA intron (NM_001114134, intron 2 of 12) intron (NM_001114134, intron 2 of 12) 5519 NM_000119 2038 Hs.368642 NM_000119 ENSG00000166947 EPB42 PA|SPH5 erythrocyte membrane protein band 4.2 protein-coding 290-240 chr20 13346722 13346941 + 2 NA Intergenic Intergenic -107144 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 301-200 chr2 55900570 55900833 + 2 NA intron (NM_001039349, intron 4 of 10) intron (NM_001039349, intron 4 of 10) 23081 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 302-237 chr2 179393012 179393196 + 2 NA Intergenic L1PA15|LINE|L1 -128272 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 362-257 chr22 27309615 27309874 + 2 NA promoter-TSS (NR_134581) promoter-TSS (NR_134581) -907 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 124-38 chr2 189069759 189069863 + 2 NA intron (NM_000393, intron 18 of 53) intron (NM_000393, intron 18 of 53) 63300 NR_036076 100422908 NR_036076 ENSG00000264725 MIR3129 mir-3129 microRNA 3129 ncRNA 425-324 chr9 78997093 78997399 + 2 NA Intergenic L1MB7|LINE|L1 148420 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 542-3 chr1 36724001 36724522 + 2 NA Intergenic Intergenic -240947 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 283-82 chr11 68229393 68229649 + 2 NA Intergenic L1M4c|LINE|L1 -15873 NM_001300909 51111 Hs.632120 NM_016028 ENSG00000110066 KMT5B CGI-85|CGI85|MRD51|SUV420H1 lysine methyltransferase 5B protein-coding 167-99 chr5 118436007 118436136 + 2 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 126046 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 254-253 chr3 119255173 119255331 + 2 NA intron (NR_046574, intron 3 of 3) MER34B-int|LTR|ERV1 -14374 NM_003778 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 306-445 chr6 143313420 143313642 + 2 NA intron (NM_016108, intron 4 of 5) L1MA3|LINE|L1 129146 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 239-284 chr4 82765345 82765524 + 2 NA intron (NM_001037582, intron 1 of 4) MER2|DNA|TcMar-Tigger -12004 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 320-80 chr11 40516295 40516473 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -223254 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 278-73 chr12 55616563 55616774 + 2 NA Intergenic LTR27C|LTR|ERV1 -20224 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 336-23 chr1 72789150 72789442 + 2 NA Intergenic Intergenic -506757 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 233-264 chr4 69786145 69786326 + 2 NA Intergenic Intergenic -25615 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 442-101 chr17 32428939 32429283 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -15399 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 307-463 chr7 113532726 113533001 + 2 NA Intergenic L1M2a|LINE|L1 386146 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 434-72 chr13 44598951 44599319 + 2 NA Intergenic L1MC4|LINE|L1 -22570 NM_001243799 8848 Hs.436383 NM_006022 ENSG00000102804 TSC22D1 Ptg-2|TGFB1I4|TSC22 TSC22 domain family member 1 protein-coding 223-243 chr4 37420110 37420286 + 2 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -33727 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 292-425 chr8 57962306 57962519 + 2 NA Intergenic Intergenic -15946 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 138-40 chr2 68684208 68684294 + 2 NA Intergenic L1M5|LINE|L1 40663 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 507-77 chr13 101178785 101179107 + 2 NA intron (NM_001350749, intron 14 of 43) MER67C|LTR|ERV1 -234582 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 292-301 chr3 180510595 180510768 + 2 NA Intergenic Intergenic -91482 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 354-117 chr13 59951268 59951534 + 2 NA intron (NM_001258369, intron 17 of 26) THE1C|LTR|ERVL-MaLR -61317 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 279-181 chr2 80251111 80251274 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 53560 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 257-416 chr8 117282050 117282214 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 147137 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 338-27 chr1 178081505 178081760 + 2 NA Intergenic L1ME3Cz|LINE|L1 12361 NR_027982 100302401 Hs.736117 NR_027982 ENSG00000224687 RASAL2-AS1 - RASAL2 antisense RNA 1 ncRNA 194-139 chr4 17979400 17979588 + 2 NA intron (NR_158566, intron 1 of 5) intron (NR_158566, intron 1 of 5) 42261 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 414-121 chr17 56432154 56432464 + 2 NA intron (NM_001370326, intron 8 of 20) intron (NM_001370326, intron 8 of 20) -161390 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 366-179 chr19 29472421 29472639 + 2 NA intron (NR_040029, intron 1 of 9) L1MA9|LINE|L1 53222 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 171-92 chr4 70317719 70317873 + 2 NA Intergenic Intergenic -17185 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 337-55 chr10 76202354 76202642 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 419737 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 749-67 chr3 192595214 192595693 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 80431 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 293-71 chr11 104871746 104872018 + 2 NA Intergenic Intergenic 26788 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 415-105 chr18 7477548 7477913 + 2 NA Intergenic MIRb|SINE|MIR -16724 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 366-74 chr11 36451492 36451731 + 2 NA intron (NM_001160167, intron 8 of 8) intron (NM_001160167, intron 8 of 8) 50614 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 968-25 chr6 69113670 69114549 + 2 NA intron (NM_001704, intron 17 of 31) MIRb|SINE|MIR 478827 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 175-178 chr9 9333948 9334082 + 2 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) -465377 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 306-363 chr4 101564507 101564733 + 2 NA Intergenic Intergenic 216843 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 274-393 chr8 111836686 111836873 + 2 NA Intergenic Intergenic 460140 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 279-6 chr1 52987776 52988021 + 2 NA intron (NM_001193600, intron 9 of 14) intron (NM_001193600, intron 9 of 14) -27039 NM_001007099 6342 Hs.476365 NM_002979 ENSG00000116171 SCP2 NLTP|NSL-TP|SCP-2|SCP-CHI|SCP-X|SCPX sterol carrier protein 2 protein-coding 703-38 chr17 63021257 63021724 + 2 NA intron (NM_025185, intron 2 of 25) MSTD|LTR|ERVL-MaLR 55255 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 185-82 chr18 7298909 7299048 + 2 NA Intergenic L1MB7|LINE|L1 67874 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 298-67 chr11 22995162 22995401 + 2 NA Intergenic HERVIP10F-int|LTR|ERV1 -134807 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 209-31 chr10 20467863 20468038 + 2 NA Intergenic Intergenic -84020 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 268-92 chr12 63070179 63070385 + 2 NA Intergenic Intergenic 82528 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 345-373 chr4 14194497 14194678 + 2 NA Intergenic Intergenic 82619 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 468-121 chr18 775506 775908 + 2 NA intron (NM_005433, intron 1 of 11) AluJb|SINE|Alu 36535 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 356-498 chr9 8187280 8187549 + 2 NA Intergenic Intergenic -387636 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 196-152 chr20 43288855 43289021 + 2 NA Intergenic Intergenic -99032 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 475-90 chr15 92581322 92581674 + 2 NA Intergenic MER119|DNA|hAT-Charlie -9235 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 453-49 chr12 28607257 28607665 + 2 NA Intergenic L1M3de|LINE|L1 -416723 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 469-15 chr1 158922255 158922588 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -9131 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 115-7 chr11 24445570 24445678 + 2 NA Intergenic Intergenic -51429 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 362-93 chr11 83875093 83875371 + 2 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -192807 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 298-467 chr8 113699322 113699478 + 2 NA Intergenic MER50|LTR|ERV1 -262461 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 115-8 chr11 60917564 60917645 + 2 NA intron (NM_024092, intron 1 of 3) intron (NM_024092, intron 1 of 3) 3446 NM_024092 79073 Hs.13662 NM_024092 ENSG00000110108 TMEM109 - transmembrane protein 109 protein-coding 159-65 chr4 44771040 44771144 + 2 NA Intergenic Intergenic -44458 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 366-366 chr6 6601894 6602122 + 2 NA intron (NM_004271, intron 1 of 4) Charlie8|DNA|hAT-Charlie 13288 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 420-54 chr11 101333280 101333552 + 2 NA Intergenic MIRb|SINE|MIR 186489 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 307-534 chrX 84795701 84795881 + 2 NA Intergenic L1PA13|LINE|L1 -138360 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 231-250 chr4 43344760 43344950 + 2 NA Intergenic Intergenic 147688 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 344-165 chr15 96252867 96253074 + 2 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -73076 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 587-171 chr8 129127562 129128055 + 2 NA Intergenic (ATTC)n|Simple_repeat|Simple_repeat 113432 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 412-312 chr7 81566650 81566924 + 2 NA Intergenic Intergenic -4968 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 565-178 chr8 46037373 46037846 + 2 NA Intergenic Intergenic 580034 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 395-22 chr1 203898885 203899160 + 2 NA Intergenic Intergenic 37175 NM_001328638 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 401-4 chr1 53045949 53046300 + 2 NA intron (NM_001193600, intron 13 of 14) L1ME1|LINE|L1 -15928 NM_153703 127435 Hs.586141 NM_153703 ENSG00000174348 PODN PCAN|SLRR5A podocan protein-coding 460-155 chr2 183275382 183275693 + 2 NA Intergenic Intergenic 151094 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 624-95 chr5 24365937 24366466 + 2 NA Intergenic L1MA9|LINE|L1 278777 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 315-437 chr7 15145384 15145645 + 2 NA Intergenic Intergenic -170656 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 246-180 chr19 53596049 53596287 + 2 NA Intergenic L1P4b|LINE|L1 7329 NR_002938 284379 Hs.631571 NR_002938 ENSG00000268864 LOC284379 - solute carrier family 7 member 3 pseudogene pseudo 271-91 chr12 28259780 28260017 + 2 NA intron (NM_001352082, intron 4 of 13) intron (NM_001352082, intron 4 of 13) -69160 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 324-225 chr18 36538209 36538461 + 2 NA intron (NM_001281740, intron 5 of 28) L1MDa|LINE|L1 125083 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 267-202 chr2 122800101 122800324 + 2 NA Intergenic Intergenic 273269 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 340-243 chr2 35201513 35201687 + 2 NA Intergenic L1MC2|LINE|L1 -269805 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 182-162 chr7 41718177 41718294 + 2 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -15145 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 300-12 chr1 97043135 97043424 + 2 NA Intergenic L1PA15|LINE|L1 -52644 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 235-111 chr15 55992816 55993002 + 2 NA intron (NM_001329212, intron 1 of 28) intron (NM_001329212, intron 1 of 28) 703 NM_001329212 4734 Hs.1565 NM_006154 ENSG00000069869 NEDD4 NEDD4-1|RPF1 NEDD4 E3 ubiquitin protein ligase protein-coding 225-238 chr4 40484535 40484753 + 2 NA intron (NM_001098634, intron 2 of 6) intron (NM_001098634, intron 2 of 6) 17475 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 361-352 chr5 23089196 23089547 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -236027 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 421-285 chr7 53537334 53537738 + 2 NA Intergenic L2a|LINE|L2 274395 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 321-224 chr16 83527034 83527207 + 2 NA intron (NM_001220489, intron 6 of 12) AluSx|SINE|Alu 18774 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 679-7 chr1 110177937 110178531 + 2 NA intron (NM_001010898, intron 6 of 11) Tigger12|DNA|TcMar-Tigger 27740 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 360-279 chr21 33162098 33162372 + 2 NA Intergenic Intergenic 8001 NR_024102 728409 Hs.125234 NR_024102 ENSG00000229086 LINC01548 C21orf54 long intergenic non-protein coding RNA 1548 ncRNA 284-65 chr11 15561723 15561884 + 2 NA Intergenic LTR12C|LTR|ERV1 -82082 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 210-255 chr7 10128388 10128560 + 2 NA Intergenic Intergenic 494204 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 290-197 chr2 13071566 13071721 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -64630 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 476-264 chr8 82163003 82163339 + 2 NA Intergenic Intergenic -320885 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 240-224 chr2 119331691 119331912 + 2 NA intron (NM_001322330, intron 2 of 5) L1MEc|LINE|L1 34941 NM_001322329 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 225-127 chr17 65362902 65363071 + 2 NA Intergenic Intergenic -94555 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 229-360 chr7 49598956 49599180 + 2 NA Intergenic Intergenic -174570 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 341-572 chrX 11501365 11501673 + 2 NA intron (NR_109776, intron 1 of 14) Tigger2a|DNA|TcMar-Tigger -73701 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 522-112 chr18 2254187 2254505 + 2 NA Intergenic L1PB1|LINE|L1 317159 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 298-86 chr12 9761682 9761943 + 2 NA promoter-TSS (NM_001781) promoter-TSS (NM_001781) -911 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 232-389 chr8 131227833 131228005 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -187010 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 335-440 chr5 141264782 141264988 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 19490 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 404-29 chr10 29124524 29124913 + 2 NA Intergenic Intergenic -164352 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 194-89 chr2 41370146 41370311 + 2 NA Intergenic L1PA13|LINE|L1 -507327 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 560-96 chr20 20443119 20443538 + 2 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 75224 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 907-18 chr3 80593585 80594232 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -170989 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 402-217 chr3 108995406 108995698 + 2 NA intron (NM_014429, intron 21 of 27) intron (NM_014429, intron 21 of 27) -41673 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 442-207 chr4 38214339 38214709 + 2 NA Intergenic L2b|LINE|L2 94570 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 298-229 chr2 127139468 127139732 + 2 NA Intergenic L1MEh|LINE|L1 -32446 NM_001320640 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 532-266 chr8 59487343 59487670 + 2 NA Intergenic L1MEc|LINE|L1 368296 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 593-39 chr13 83669910 83670424 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 212226 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 261-319 chr5 137359400 137359632 + 2 NA intron (NM_004598, intron 2 of 10) MIRb|SINE|MIR 139810 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 321-193 chr15 57408193 57408452 + 2 NA intron (NM_032866, intron 1 of 18) intron (NM_032866, intron 1 of 18) 31817 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 448-270 chr8 34141508 34141740 + 2 NA Intergenic Intergenic -541518 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 462-74 chr14 33895046 33895377 + 2 NA Intergenic L1MA9|LINE|L1 55863 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 350-98 chr12 58542532 58542731 + 2 NA Intergenic Intergenic -49071 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 563-205 chrX 124537389 124537794 + 2 NA intron (NM_014253, intron 15 of 30) intron (NM_014253, intron 15 of 30) 191309 NM_002351 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 303-263 chr21 25818534 25818745 + 2 NA Intergenic Intergenic -82985 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 420-46 chr10 107259666 107260014 + 2 NA Intergenic L1PB1|LINE|L1 -95134 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 407-169 chr20 42463441 42463682 + 2 NA intron (NM_133170, intron 8 of 31) intron (NM_133170, intron 8 of 31) -221922 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 595-166 chr8 136885579 136886012 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 354997 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 438-209 chr5 11628665 11628997 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -39765 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 384-9 chr1 85808069 85808289 + 2 NA intron (NM_152890, intron 47 of 59) ERVL-E-int|LTR|ERVL -99746 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 295-474 chr8 107826496 107826653 + 2 NA Intergenic Intergenic 255365 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 494-228 chr5 54490207 54490620 + 2 NA Intergenic Intergenic -27346 NM_001145427 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 341-297 chr20 42678003 42678288 + 2 NA exon (NM_007050, exon 7 of 31) exon (NM_007050, exon 7 of 31) -7338 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 369-454 chrX 68228923 68229108 + 2 NA intron (NM_002547, intron 6 of 24) L1PA5|LINE|L1 204480 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 391-194 chr2 204352227 204352562 + 2 NA Intergenic Intergenic -193081 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 401-82 chr14 31749335 31749603 + 2 NA intron (NM_001201574, intron 1 of 5) L1M2|LINE|L1 34900 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 326-265 chr2 138995167 138995335 + 2 NA Intergenic Intergenic 97927 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 331-417 chr5 53533468 53533682 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -27064 NM_001318051 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 825-11 chr15 85170117 85170657 + 2 NA Intergenic HAL1|LINE|L1 64394 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 194-221 chr9 18002376 18002530 + 2 NA Intergenic MIR|SINE|MIR 423387 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 450-294 chr8 36297464 36297796 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -486744 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 466-46 chr11 42436484 42436892 + 2 NA Intergenic L1PA16|LINE|L1 -182998 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 419-76 chr12 92569510 92569925 + 2 NA Intergenic HAL1ME|LINE|L1 103038 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 312-316 chr22 48821154 48821351 + 2 NA Intergenic Intergenic 40957 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 433-224 chr5 58365825 58366204 + 2 NA Intergenic Intergenic 94072 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 475-149 chr2 147238446 147238824 + 2 NA Intergenic L1ME2z|LINE|L1 -605882 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 308-265 chr20 24561737 24561948 + 2 NA intron (NM_024893, intron 2 of 3) intron (NM_024893, intron 2 of 3) 91881 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 287-99 chr11 108189772 108190053 + 2 NA intron (NM_001321307, intron 5 of 17) intron (NM_001321307, intron 5 of 17) 32726 NM_001321307 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 219-148 chr18 76104407 76104588 + 2 NA Intergenic LTR33A_|LTR|ERVL -18501 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 824-17 chr19 34776841 34777425 + 2 NA Intergenic L1MD|LINE|L1 -3918 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 270-331 chr6 50493023 50493261 + 2 NA Intergenic Intergenic -220402 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 270-54 chr11 42810607 42810871 + 2 NA Intergenic HAL1|LINE|L1 458630 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 254-124 chr14_GL000225v1_random 91983 92200 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 617-120 chr6 165069449 165069948 + 2 NA Intergenic L1MC2|LINE|L1 239907 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 454-31 chr10 83280813 83281148 + 2 NA Intergenic L1MEf|LINE|L1 396109 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 217-392 chr9 89616114 89616286 + 2 NA Intergenic Intergenic 11188 NM_006705 10912 Hs.9701 NM_006705 ENSG00000130222 GADD45G CR6|DDIT2|GADD45gamma|GRP17 growth arrest and DNA damage inducible gamma protein-coding 427-283 chr9 110964308 110964583 + 2 NA intron (NM_001351417, intron 4 of 5) L1MC5a|LINE|L1 72335 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 374-44 chr10 130307086 130307374 + 2 NA Intergenic L1MCc|LINE|L1 170821 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 302-249 chr20 48765422 48765573 + 2 NA intron (NM_020820, intron 1 of 39) intron (NM_020820, intron 1 of 39) 62502 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 294-353 chr5 1769990 1770209 + 2 NA Intergenic L1MB5|LINE|L1 29738 NM_032479 64979 Hs.719465 NM_032479 ENSG00000171421 MRPL36 BRIP1|L36mt|MRP-L36|PRPL36|RPMJ mitochondrial ribosomal protein L36 protein-coding 401-214 chr3 126628414 126628755 + 2 NA intron (NM_001173513, intron 10 of 14) L1M5|LINE|L1 26540 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TR2IT1|TRXR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1 thioredoxin reductase 3 protein-coding 438-268 chr8 49870155 49870536 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -39451 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 454-126 chr18 71306245 71306499 + 2 NA Intergenic MER4D1|LTR|ERV1 272584 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 230-27 chr1 223115473 223115610 + 2 NA intron (NM_003268, intron 5 of 5) AluSz|SINE|Alu 27707 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 285-240 chr20 15667701 15667865 + 2 NA intron (NM_001351663, intron 8 of 17) L1MC4|LINE|L1 255531 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 287-356 chr6 86131908 86132160 + 2 NA Intergenic L1PA13|LINE|L1 -453301 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 262-421 chr8 53417743 53417917 + 2 NA Intergenic LTR29|LTR|ERV1 106135 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 324-183 chr15 61510625 61510863 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -219174 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 389-327 chr6 147944781 147945053 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -327411 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 468-34 chr10 75448246 75448608 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 16803 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 316-477 chr6 39600641 39600917 + 2 NA intron (NM_001289020, intron 6 of 21) intron (NM_001289020, intron 6 of 21) 124629 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 286-166 chr17 70609144 70609305 + 2 NA Intergenic Intergenic 439689 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 782-5 chr10 72184476 72184951 + 2 NA intron (NM_001369110, intron 5 of 8) L1ME1|LINE|L1 31243 NM_001369089 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 252-10 chr1 85547356 85547581 + 2 NA intron (NM_001134445, intron 1 of 6) MIR3|SINE|MIR 30732 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 237-237 chr3 64798924 64799089 + 2 NA intron (NR_038264, intron 1 of 5) MLT1K|LTR|ERVL-MaLR -111006 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 507-222 chr6 103759847 103760241 + 2 NA Intergenic L1MA8|LINE|L1 1099502 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 347-398 chr5 55836531 55836873 + 2 NA Intergenic Intergenic -14655 NM_001242637 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 334-208 chr17 58911838 58912165 + 2 NA intron (NM_014906, intron 1 of 6) LTR10B1|LTR|ERV1 156132 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 613-5 chr1 71943658 71944148 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -106891 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 202-155 chr3 17623155 17623311 + 2 NA intron (NM_001349084, intron 2 of 22) MER5A1|DNA|hAT-Charlie 76787 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 334-175 chr15 62154484 62154706 + 2 NA Intergenic Intergenic 10690 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 596-125 chr3 120659925 120660423 + 2 NA intron (NM_000187, intron 4 of 13) MSTA|LTR|ERVL-MaLR 22065 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 135-76 chrX 64379825 64379939 + 2 NA intron (NM_017677, intron 1 of 13) L1MC|LINE|L1 15570 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 387-306 chr6 40747543 40747922 + 2 NA Intergenic Intergenic -160368 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 373-233 chr20 13386162 13386429 + 2 NA Intergenic Intergenic -146608 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 181-51 chr16 79945459 79945620 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie 150290 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 287-136 chr14 62334232 62334494 + 2 NA Intergenic L1MEc|LINE|L1 -194390 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 708-18 chr12 29617804 29618246 + 2 NA intron (NM_001367875, intron 8 of 19) L2a|LINE|L2 -118332 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 509-185 chr5 33694003 33694363 + 2 NA intron (NM_001324512, intron 3 of 21) L1PREC2|LINE|L1 197807 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 681-15 chr12 118636621 118637090 + 2 NA Intergenic LTR16A|LTR|ERVL 124824 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 264-453 chrX 90078557 90078815 + 2 NA Intergenic LTR49|LTR|ERV1 156778 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 360-109 chr13 93757071 93757298 + 2 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 101289 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 511-129 chr2 133533467 133533860 + 2 NA intron (NM_207481, intron 2 of 17) intron (NM_207481, intron 2 of 17) 34800 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 319-288 chr20 24688007 24688237 + 2 NA Intergenic L1PB1|LINE|L1 218161 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 257-352 chr6 62460076 62460251 + 2 NA Intergenic Intergenic -173936 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 265-158 chr18 63619849 63620058 + 2 NA Intergenic Intergenic 24303 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 365-153 chr17 52101257 52101496 + 2 NA intron (NM_001082533, intron 2 of 9) LTR82B|LTR|ERVL 57338 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 344-214 chr19 43910498 43910682 + 2 NA Intergenic L1ME1|LINE|L1 -8787 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 323-37 chr1 239477169 239477352 + 2 NA intron (NM_001347716, intron 1 of 7) MIR|SINE|MIR 90692 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 336-49 chr1 241007359 241007610 + 2 NA intron (NM_001350116, intron 3 of 16) Tigger2a|DNA|TcMar-Tigger -124788 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 294-260 chr20 43021797 43021995 + 2 NA intron (NM_133170, intron 1 of 31) MLT1J|LTR|ERVL-MaLR 53153 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 244-214 chr22 49026085 49026302 + 2 NA Intergenic Intergenic 159423 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 416-92 chr12 60022708 60023009 + 2 NA Intergenic L1MB5|LINE|L1 333488 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 367-176 chr18 12995402 12995731 + 2 NA intron (NM_032142, intron 1 of 44) L2a|LINE|L2 4204 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 378-125 chr13 112156116 112156368 + 2 NA intron (NR_134944, intron 1 of 1) MLT1K|LTR|ERVL-MaLR 4468 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 360-211 chr2 37789862 37790066 + 2 NA Intergenic L1M2|LINE|L1 39747 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 338-36 chr1 232756533 232756802 + 2 NA Intergenic Intergenic -13952 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 352-270 chr2 215547231 215547468 + 2 NA Intergenic Intergenic 93642 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 347-50 chr10 51057917 51058098 + 2 NA intron (NM_001098512, intron 1 of 17) L1ME3|LINE|L1 10545 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 327-540 chrX 75037976 75038209 + 2 NA Intergenic L1M1|LINE|L1 -112640 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 300-358 chr5 53316397 53316604 + 2 NA Intergenic L1MEc|LINE|L1 -164129 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 386-288 chr5 42641656 42641904 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 75916 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 368-323 chr4 38713698 38714049 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -49245 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 442-92 chr15 49505815 49506080 + 2 NA intron (NM_001330293, intron 10 of 10) L1MEf|LINE|L1 82705 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 546-231 chr8 46626747 46627127 + 2 NA Intergenic LTR9|LTR|ERV1 -9294 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 724-95 chr7 71249421 71250027 + 2 NA intron (NM_022479, intron 1 of 10) Charlie7|DNA|hAT-Charlie -57950 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 334-458 chr6 48655321 48655577 + 2 NA Intergenic AluSx1|SINE|Alu -586760 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 423-263 chr7 36334671 36334932 + 2 NA intron (NM_001199707, intron 3 of 5) MIR3|SINE|MIR 32439 NM_001199706 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 255-69 chr12 4732176 4732370 + 2 NA intron (NM_017417, intron 2 of 10) intron (NM_017417, intron 2 of 10) 11873 NM_017417 26290 Hs.511985 NM_017417 ENSG00000130035 GALNT8 GALNAC-T8 polypeptide N-acetylgalactosaminyltransferase 8 protein-coding 692-64 chr3 44497635 44498246 + 2 NA TTS (NM_001287349) TTS (NM_001287349) 12677 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 260-115 chr13 48788165 48788321 + 2 NA Intergenic MIRc|SINE|MIR 134314 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 277-199 chr2 80855950 80856219 + 2 NA Intergenic Intergenic 542705 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 136-48 chr2 208706756 208706831 + 2 NA intron (NR_136588, intron 3 of 5) L1ME1|LINE|L1 164151 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 286-392 chr6 76228473 76228645 + 2 NA Intergenic Intergenic -155881 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 303-321 chr4 81574557 81574856 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -102799 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 406-247 chr5 153797679 153797986 + 2 NA intron (NR_157093, intron 15 of 16) intron (NR_157093, intron 15 of 16) 101155 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 391-225 chr3 24722850 24723110 + 2 NA Intergenic Intergenic -106343 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 261-25 chr1 179795432 179795614 + 2 NA intron (NM_001329719, intron 1 of 4) MSTD|LTR|ERVL-MaLR -8401 NR_162130 113219451 NR_162130 MIR12116 - microRNA 12116 ncRNA 339-32 chr1 174862945 174863259 + 2 NA intron (NM_001366446, intron 19 of 25) AluSz|SINE|Alu -11284 NM_001243763 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 299-140 chr14 69032148 69032443 + 2 NA Intergenic L1ME1|LINE|L1 52613 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 331-167 chr14 87174670 87174854 + 2 NA Intergenic LTR33B|LTR|ERVL 268984 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 637-74 chr20 52563670 52564151 + 2 NA Intergenic Intergenic -56928 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 658-81 chr3 102949058 102949612 + 2 NA Intergenic Intergenic 514320 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 233-51 chr10 130367799 130368023 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 231502 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 281-397 chr6 109271920 109272121 + 2 NA intron (NR_152435, intron 23 of 45) L1MB7|LINE|L1 106189 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 173-115 chr5 166695215 166695327 + 2 NA Intergenic Intergenic 231099 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 401-71 chr12 123197917 123198297 + 2 NA intron (NR_103517, intron 12 of 23) intron (NR_103517, intron 12 of 23) 35034 NM_022782 10198 Hs.577404 NM_022782 ENSG00000051825 MPHOSPH9 MPP-9|MPP9 M-phase phosphoprotein 9 protein-coding 422-5 chr1 46120826 46121170 + 2 NA intron (NM_001303427, intron 1 of 9) MLT1L|LTR|ERVL-MaLR 9675 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 124-17 chr11 97498995 97499095 + 2 NA Intergenic L1M4b|LINE|L1 990620 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 333-347 chr3 55054791 55055053 + 2 NA intron (NM_018398, intron 35 of 37) intron (NM_018398, intron 35 of 37) -87820 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 314-616 chr9 104199522 104199782 + 2 NA Intergenic Intergenic -70577 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 328-29 chr1 190403879 190404110 + 2 NA intron (NM_199051, intron 2 of 7) MIRb|SINE|MIR 72016 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 283-388 chr6 14603330 14603554 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -317988 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 394-324 chr8 69652845 69653107 + 2 NA intron (NR_132437, intron 16 of 16) MER57B1|LTR|ERV1 60076 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 522-181 chr3 132747981 132748450 + 2 NA intron (NR_002811, intron 3 of 10) L1MEg|LINE|L1 -25756 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 254-408 chr8 79966676 79966904 + 2 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 63469 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 210-216 chr5 9476304 9476452 + 2 NA intron (NM_003966, intron 1 of 22) L1ME4b|LINE|L1 -34955 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 351-82 chr11 133550965 133551245 + 2 NA Intergenic Intergenic -18604 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 390-257 chr4 367090 367456 + 2 NA intron (NM_003441, intron 3 of 3) (GTGTAT)n|Simple_repeat|Simple_repeat 17116 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 302-24 chr1 185210336 185210577 + 2 NA intron (NM_017673, intron 13 of 18) L1PA7|LINE|L1 53289 NM_017673 54823 Hs.134183 NM_017673 ENSG00000116668 SWT1 C1orf26|HsSwt1 SWT1 RNA endoribonuclease homolog protein-coding 647-25 chr13 94308715 94309342 + 2 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -121037 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 505-79 chr14 48647111 48647455 + 2 NA Intergenic Intergenic -852269 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 310-32 chr1 220533188 220533362 + 2 NA intron (NM_018650, intron 1 of 17) intron (NM_018650, intron 1 of 17) 5092 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 350-357 chr4 92197174 92197377 + 2 NA Intergenic L1MC4a|LINE|L1 80027 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 737-32 chr17 57151468 57152007 + 2 NA Intergenic MIRb|SINE|MIR 56248 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 148-36 chr17 53319943 53320045 + 2 NA Intergenic L1MC1|LINE|L1 334489 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 376-19 chr1 167289918 167290194 + 2 NA intron (NM_001365848, intron 2 of 17) intron (NM_001365848, intron 2 of 17) -39014 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 605-79 chr3 136324257 136324717 + 2 NA intron (NM_000532, intron 10 of 14) L1M4c|LINE|L1 74147 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 330-98 chr11 78628420 78628602 + 2 NA Intergenic L1M1|LINE|L1 -53647 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 151-21 chr13 69230084 69230195 + 2 NA intron (NR_125752, intron 1 of 3) L1PA17|LINE|L1 7793 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 540-151 chr3 178504121 178504564 + 2 NA Intergenic Intergenic -32094 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 267-254 chr3 59018637 59018848 + 2 NA non-coding (NR_110820, exon 3 of 3) non-coding (NR_110820, exon 3 of 3) 31283 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 374-266 chr3 164727157 164727374 + 2 NA intron (NR_126405, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 104215 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 349-406 chr5 21020359 21020616 + 2 NA Intergenic (AATTTA)n|Simple_repeat|Simple_repeat -404952 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 267-120 chr15 24698800 24699030 + 2 NA Intergenic L1MCa|LINE|L1 23521 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 581-164 chr8 36540662 36541174 + 2 NA Intergenic L1ME3E|LINE|L1 -243456 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 271-371 chr6 38340721 38340866 + 2 NA intron (NM_052893, intron 8 of 11) L1MC5|LINE|L1 -140803 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 836-16 chr12 4024829 4025517 + 2 NA Intergenic Intergenic -151725 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 215-89 chr14 83093857 83094030 + 2 NA Intergenic Intergenic 451311 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 290-130 chr14 50036455 50036633 + 2 NA intron (NR_131171, intron 6 of 8) intron (NR_131171, intron 6 of 8) -29024 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 352-263 chr2 183623456 183623713 + 2 NA Intergenic Intergenic 499141 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 267-259 chr3 88337842 88338023 + 2 NA promoter-TSS (NM_001368165) promoter-TSS (NM_001368165) -524 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 359-480 chr8 91565216 91565420 + 2 NA Intergenic Intergenic 315999 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 345-521 chr8 71083694 71083883 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 272918 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 345-443 chr5 136856486 136856741 + 2 NA Intergenic L1MC3|LINE|L1 -271584 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 337-482 chr6 40318446 40318645 + 2 NA Intergenic Intergenic 37461 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 178-21 chr10 59942492 59942605 + 2 NA Intergenic MIR|SINE|MIR 18365 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 222-320 chr6 40767201 40767314 + 2 NA Intergenic L1PA13|LINE|L1 -179893 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 300-290 chr3 120548181 120548400 + 2 NA Intergenic L1PA16|LINE|L1 -48046 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 601-123 chr5 104600235 104600821 + 2 NA Intergenic Intergenic -498946 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 475-27 chr10 71540053 71540402 + 2 NA intron (NM_052836, intron 6 of 12) intron (NM_052836, intron 6 of 12) -28307 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 288-451 chr8 119080723 119080926 + 2 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -12042 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 352-269 chr2 211503050 211503251 + 2 NA intron (NM_001042599, intron 20 of 26) L1PA15-16|LINE|L1 885579 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 150-19 chr10 117624490 117624593 + 2 NA Intergenic Intergenic -79473 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 584-164 chr7 96499405 96499836 + 2 NA intron (NR_163953, intron 3 of 5) intron (NR_163953, intron 3 of 5) 3903 NR_163949 301-329 chr4 100357083 100357333 + 2 NA Intergenic Intergenic 38039 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 362-182 chr16 51608831 51609045 + 2 NA Intergenic Intergenic -153581 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 722-7 chr1 115174307 115174980 + 2 NA Intergenic Intergenic -85140 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 259-124 chr14 76548861 76549038 + 2 NA Intergenic Intergenic 177602 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 356-382 chr5 12134712 12135000 + 2 NA Intergenic L1PA15|LINE|L1 -230410 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 321-369 chr3 50783335 50783546 + 2 NA intron (NM_004947, intron 2 of 52) L1PB1|LINE|L1 108360 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 532-58 chr12 133074644 133074942 + 2 NA Intergenic L1MDa|LINE|L1 -5410 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 521-33 chr10 84259650 84260076 + 2 NA TTS (NM_002921) TTS (NM_002921) 14810 NM_001012722 5995 Hs.1544 NM_002921 ENSG00000148604 RGR RP44 retinal G protein coupled receptor protein-coding 431-79 chr14 48629192 48629616 + 2 NA Intergenic HAL1ME|LINE|L1 -834390 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 527-212 chr5 97904893 97905241 + 2 NA intron (NR_146299, intron 2 of 2) L1M2|LINE|L1 64309 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 553-250 chrX 56591161 56591693 + 2 NA Intergenic L1PA15|LINE|L1 27834 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 193-145 chr3 190330021 190330144 + 2 NA Intergenic Intergenic -7636 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 460-248 chr5 130333226 130333517 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger 428906 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 486-265 chr6 155899313 155899731 + 2 NA Intergenic Intergenic -47275 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 258-97 chr12 99378798 99379027 + 2 NA intron (NM_152788, intron 12 of 25) MLT1C-int|LTR|ERVL-MaLR -223822 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 257-163 chr19 22833018 22833178 + 2 NA intron (NM_001349726, intron 1 of 3) MER57E3|LTR|ERV1 807 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 175-114 chr4 81570103 81570227 + 2 NA Intergenic Intergenic -98258 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 649-54 chr2 143763470 143764061 + 2 NA intron (NM_018460, intron 13 of 13) (AT)n|Simple_repeat|Simple_repeat -173302 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 766-58 chr6 61414215 61414848 + 2 NA Intergenic ALR/Alpha|Satellite|centr -159599 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 457-147 chr21 27884830 27885182 + 2 NA Intergenic LTR12D|LTR|ERV1 -128357 NR_027246 246705 Hs.505079 NM_145180 ENSG00000178457 LINC00314 C21orf94|NCRNA00314 long intergenic non-protein coding RNA 314 ncRNA 247-178 chr19 46103645 46103800 + 2 NA Intergenic HERVH-int|LTR|ERV1 20966 NM_207393 388555 Hs.365496 NM_207393 ENSG00000188624 IGFL3 UNQ483 IGF like family member 3 protein-coding 403-258 chr5 122274705 122275020 + 2 NA Intergenic L1MD2|LINE|L1 -36829 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 511-83 chr16 13384922 13385273 + 2 NA Intergenic L1MD1|LINE|L1 483499 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 371-155 chr19 56704513 56704837 + 2 NA Intergenic L1MA4|LINE|L1 -32918 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 327-423 chr5 156627181 156627432 + 2 NA intron (NM_001128209, intron 5 of 7) intron (NM_001128209, intron 5 of 7) -222989 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 228-355 chr8 131466006 131466193 + 2 NA Intergenic Intergenic -425190 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 388-24 chr1 194918105 194918452 + 2 NA Intergenic Intergenic 1170437 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 334-302 chr2 226175850 226176034 + 2 NA intron (NR_046102, intron 5 of 6) intron (NR_046102, intron 5 of 6) 33148 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 706-53 chr5 4166752 4167160 + 2 NA Intergenic L1ME3F|LINE|L1 571124 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 406-42 chr10 132105944 132106189 + 2 NA intron (NM_001323086, intron 2 of 23) MER58B|DNA|hAT-Charlie 40120 NM_001105521 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 535-23 chr10 12573911 12574394 + 2 NA intron (NM_001351032, intron 4 of 11) L2|LINE|L2 -4601 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 279-420 chr8 115105108 115105333 + 2 NA Intergenic Intergenic 562793 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 222-381 chr8 135900595 135900783 + 2 NA Intergenic Intergenic 443233 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 162-139 chr8 139050954 139051099 + 2 NA Intergenic LTR5B|LTR|ERVK -136985 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 346-206 chr18 6698092 6698267 + 2 NA Intergenic L1ME1|LINE|L1 -31537 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 304-33 chr10 6767659 6767932 + 2 NA Intergenic Intergenic 11385 NR_108074 100652997 Hs.255086 NR_108074 ENSG00000281186 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 496-277 chr8 52099484 52099794 + 2 NA Intergenic Intergenic -94723 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 418-78 chr15 47995788 47996118 + 2 NA Intergenic Intergenic -125037 NM_205850 283652 Hs.710240 NM_205850 ENSG00000188467 SLC24A5 JSX|NCKX5|OCA6|SHEP4 solute carrier family 24 member 5 protein-coding 304-316 chr22 37617600 37617810 + 2 NA intron (NM_001363771, intron 3 of 16) FRAM|SINE|Alu 8665 NM_001172688 26088 Hs.499158 NM_013365 ENSG00000100083 GGA1 - golgi associated, gamma adaptin ear containing, ARF binding protein 1 protein-coding 280-396 chr8 4033870 4034057 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 960951 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 350-413 chr5 124541572 124541858 + 2 NA Intergenic Intergenic -103195 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 207-173 chr21 44565569 44565720 + 2 NA intron (NM_144991, intron 2 of 11) L1M4b|LINE|L1 -6849 NM_198696 386682 Hs.688630 NM_198696 ENSG00000212935 KRTAP10-3 KAP10.3|KAP18-3|KAP18.3|KRTAP10.3|KRTAP18-3|KRTAP18.3 keratin associated protein 10-3 protein-coding 304-541 chr8 136097238 136097529 + 2 NA Intergenic L1MC|LINE|L1 -433415 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 341-302 chr20 46619310 46619632 + 2 NA intron (NM_001193340, intron 2 of 12) L2b|LINE|L2 31988 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 451-226 chr8 46476815 46477144 + 2 NA Intergenic ALR/Alpha|Satellite|centr 140664 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 746-18 chr12 21367196 21367628 + 2 NA intron (NM_001329201, intron 1 of 2) HAL1|LINE|L1 -5490 NM_000415 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 367-386 chr6 35017957 35018176 + 2 NA intron (NM_015245, intron 11 of 23) intron (NM_015245, intron 11 of 23) 123273 NM_001366323 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 390-433 chrX 56192759 56193023 + 2 NA intron (NM_001324104, intron 2 of 6) L1MA3|LINE|L1 -39465 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 290-310 chr4 53823062 53823312 + 2 NA Intergenic Intergenic 127286 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 369-41 chr10 57816877 57817142 + 2 NA Intergenic HERVL18-int|LTR|ERVL 450885 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 257-184 chr2 53528386 53528539 + 2 NA Intergenic HAL1|LINE|L1 -239321 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 333-442 chr5 36481478 36481784 + 2 NA Intergenic Intergenic -124724 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 184-30 chr10 85318528 85318670 + 2 NA Intergenic MER96|DNA|hAT-Tip100 114173 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 494-38 chr11 59895499 59895878 + 2 NA Intergenic Intergenic -29201 NM_001062 6947 Hs.2012 NM_001062 ENSG00000134827 TCN1 HC|TC-1|TC1|TCI transcobalamin 1 protein-coding 342-10 chr1 60331589 60331774 + 2 NA Intergenic L2a|LINE|L2 -257911 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 337-547 chr8 110671756 110672049 + 2 NA Intergenic L2a|LINE|L2 355531 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 450-25 chr10 9556998 9557350 + 2 NA Intergenic Intergenic -261581 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 299-322 chr4 60670107 60670298 + 2 NA Intergenic Intergenic -252417 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 356-180 chr16 51307677 51307995 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -156564 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 268-176 chr2 6706254 6706422 + 2 NA Intergenic L1MB7|LINE|L1 -55819 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 297-56 chr10 65038663 65038912 + 2 NA Intergenic L2c|LINE|L2 -114269 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 466-295 chr9 132494227 132494631 + 2 NA intron (NM_207417, intron 2 of 6) MER20|DNA|hAT-Charlie 84218 NM_001282957 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 327-264 chr2 88168917 88169124 + 2 NA Intergenic Intergenic -1275 NM_001244678 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 273-212 chr2 43851156 43851334 + 2 NA intron (NM_001357321, intron 3 of 12) intron (NM_001357321, intron 3 of 12) 12274 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 370-352 chr4 83423551 83423913 + 2 NA intron (NM_001297757, intron 13 of 16) AluSq2|SINE|Alu 32091 NM_133636 113510 Hs.480101 NM_133636 ENSG00000163312 HELQ HEL308 helicase, POLQ like protein-coding 312-489 chr7 64688952 64689147 + 2 NA intron (NM_001013746, intron 2 of 4) LTR70|LTR|ERV1 9985 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 194-40 chr12 32027421 32027556 + 2 NA Intergenic HERVIP10FH-int|LTR|ERV1 68073 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 423-36 chr10 104977457 104977698 + 2 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -311361 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 373-69 chr10 120010074 120010313 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 51680 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 263-385 chr7 24550517 24550751 + 2 NA Intergenic Intergenic -22818 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 350-383 chr5 13980162 13980385 + 2 NA Intergenic L2a|LINE|L2 -35793 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 232-359 chr7 68374147 68374296 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 353968 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 396-39 chr1 233035776 233036005 + 2 NA intron (NM_014801, intron 25 of 33) intron (NM_014801, intron 25 of 33) 85048 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 277-367 chr7 6669663 6669826 + 2 NA Intergenic Intergenic 32426 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 298-62 chr10 120043092 120043385 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 84725 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 358-290 chr3 34965370 34965589 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 428544 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 355-106 chr11 104124588 104124821 + 2 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 39443 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 201-134 chr20 6937573 6937701 + 2 NA Intergenic Intergenic 169951 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 251-244 chr3 117176835 117177080 + 2 NA Intergenic Intergenic 255526 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 241-224 chr21 19528063 19528200 + 2 NA Intergenic Intergenic 371624 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 205-243 chr6 76286348 76286498 + 2 NA Intergenic L1MA4|LINE|L1 -213745 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 280-433 chr9 25241165 25241325 + 2 NA Intergenic Intergenic 437613 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 225-173 chr2 228370795 228370998 + 2 NA Intergenic LTR57-int|LTR|ERVL -189209 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 445-162 chr21 42169981 42170282 + 2 NA Intergenic L1ME2z|LINE|L1 -29558 NM_207627 9619 Hs.124649 NM_004915 ENSG00000160179 ABCG1 ABC8|WHITE1 ATP binding cassette subfamily G member 1 protein-coding 157-10 chr1 154153720 154153868 + 2 NA intron (NM_001159484, intron 1 of 37) intron (NM_001159484, intron 1 of 37) 1322 NM_207308 91181 Hs.67639 NM_207308 ENSG00000143552 NUP210L - nucleoporin 210 like protein-coding 417-14 chr1 117150571 117150843 + 2 NA intron (NM_024626, intron 4 of 5) L1MB2|LINE|L1 -28958 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 466-8 chr1 104633048 104633412 + 2 NA Intergenic Intergenic 560207 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 475-77 chr14 54721891 54722230 + 2 NA intron (NM_001161576, intron 2 of 10) intron (NM_001161576, intron 2 of 10) -32773 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 334-391 chr4 111869467 111869791 + 2 NA Intergenic Intergenic -275825 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 388-129 chr17 3343313 3343657 + 2 NA Intergenic Intergenic 33240 NR_024128 390756 Hs.632245 NM_001005334 ENSG00000180068 OR3A4P OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P olfactory receptor family 3 subfamily A member 4 pseudogene pseudo 633-69 chr2 194177039 194177523 + 2 NA Intergenic L1M4b|LINE|L1 -166988 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 376-353 chr6 114658661 114658895 + 2 NA Intergenic L1PA8|LINE|L1 -595901 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 280-394 chr7 111674451 111674711 + 2 NA Intergenic Intergenic -112064 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 229-171 chr2 28573849 28574041 + 2 NA intron (NR_138141, intron 2 of 35) intron (NR_138141, intron 2 of 35) 7588 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 384-176 chr2 106769662 106770019 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 116188 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 292-254 chr20 44212740 44212901 + 2 NA intron (NR_038337, intron 1 of 2) L2a|LINE|L2 1734 NR_038337 100505783 Hs.159049 NR_038337 ENSG00000223891 OSER1-DT OSER1-AS1 OSER1 divergent transcript ncRNA 402-233 chr4 62516299 62516586 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -354677 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 282-178 chr18 52248455 52248638 + 2 NA Intergenic Intergenic -91651 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 608-78 chr2 166451460 166451828 + 2 NA intron (NR_045628, intron 10 of 25) L2b|LINE|L2 35327 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 583-47 chr12 125999213 125999774 + 2 NA Intergenic L1MEg1|LINE|L1 -16119 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 353-34 chr1 192344906 192345106 + 2 NA intron (NM_001039152, intron 2 of 4) intron (NM_001039152, intron 2 of 4) 28014 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 317-180 chr16 65560799 65561048 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 15377 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 424-293 chr9 106564519 106564812 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -36263 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 523-153 chr20 44018400 44018754 + 2 NA intron (NM_001098797, intron 3 of 8) intron (NM_001098797, intron 3 of 8) 72681 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 430-80 chr14 38884351 38884569 + 2 NA intron (NR_135256, intron 1 of 3) MADE1|DNA|TcMar-Mariner 1864 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 329-611 chr9 95790012 95790189 + 2 NA Intergenic L1MA9|LINE|L1 -85591 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 308-7 chr1 41202783 41202952 + 2 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) 39439 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 319-525 chr8 72902158 72902352 + 2 NA intron (NM_004770, intron 2 of 2) L2|LINE|L2 -106609 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 197-11 chr1 99835560 99835740 + 2 NA Intergenic Intergenic -14711 NM_000642 178 Hs.904 NM_000028 ENSG00000162688 AGL GDE amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase protein-coding 246-269 chr3 113631376 113631575 + 2 NA Intergenic Intergenic 36599 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 408-9 chr1 71126725 71126987 + 2 NA intron (NR_046217, intron 2 of 3) L1M3f|LINE|L1 45532 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 147-79 chr7 36955472 36955570 + 2 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 29591 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 625-42 chr18 57872937 57873444 + 2 NA Intergenic L1M4|LINE|L1 -69875 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 250-185 chr19 51722772 51722923 + 2 NA intron (NM_001523, intron 1 of 4) MER33|DNA|hAT-Charlie 1144 NM_001297436 3036 Hs.57697 NM_001523 ENSG00000105509 HAS1 HAS hyaluronan synthase 1 protein-coding 397-247 chr5 25921661 25921982 + 2 NA Intergenic Intergenic 730868 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 577-30 chr10 67485946 67486369 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -82747 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 304-480 chr7 10163851 10164080 + 2 NA Intergenic Intergenic 529695 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 451-107 chr19 36675882 36676230 + 2 NA Intergenic AluSx1|SINE|Alu -9219 NM_001322823 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 218-165 chr2 117705625 117705814 + 2 NA Intergenic Intergenic -108972 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 597-18 chr10 18976095 18976562 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -72473 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 207-224 chr4 98584875 98585074 + 2 NA intron (NM_005723, intron 1 of 7) intron (NM_005723, intron 1 of 7) 73637 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 181-173 chrX 148158244 148158375 + 2 NA Intergenic MIRb|SINE|MIR 176972 NM_152578 158521 Hs.128580 NM_152578 ENSG00000176988 FMR1NB CT37|NY-SAR-35|NYSAR35 FMR1 neighbor protein-coding 242-181 chr2 64997088 64997302 + 2 NA intron (NM_003038, intron 1 of 7) intron (NM_003038, intron 1 of 7) 7796 NM_003038 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 244-25 chr10 15143972 15144106 + 2 NA intron (NM_001308295, intron 1 of 12) intron (NM_001308295, intron 1 of 12) 11308 NR_036506 100192204 Hs.714691 NR_036506 ENSG00000206448 PPIAP30 - peptidylprolyl isomerase A pseudogene 30 pseudo 281-92 chr12 74669010 74669150 + 2 NA Intergenic Intergenic 131245 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 291-478 chr8 137944959 137945165 + 2 NA intron (NR_161374, intron 2 of 7) L2b|LINE|L2 138483 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 372-371 chr4 103720273 103720582 + 2 NA promoter-TSS (NM_001059) promoter-TSS (NM_001059) -442 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 189-173 chr6 22077326 22077481 + 2 NA intron (NR_015410, intron 8 of 11) intron (NR_015410, intron 8 of 11) 69790 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 351-168 chr17 20040398 20040708 + 2 NA intron (NM_001243439, intron 1 of 14) L1MDa|LINE|L1 31194 NM_001243439 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 401-161 chr2 71825708 71826088 + 2 NA Intergenic L1ME3F|LINE|L1 321964 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 324-376 chr4 11852975 11853269 + 2 NA Intergenic L2a|LINE|L2 69944 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 220-327 chr6 134362231 134362431 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -44273 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 239-105 chr14 65577653 65577819 + 2 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 106634 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 461-217 chr5 92484188 92484506 + 2 NA Intergenic L1MB4|LINE|L1 1086996 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 416-176 chr2 95336394 95336740 + 2 NA intron (NM_013434, intron 2 of 8) L1MEg|LINE|L1 -10091 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 431-226 chr5 62057074 62057452 + 2 NA Intergenic L1MA3|LINE|L1 -248899 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 338-176 chr15 27643059 27643308 + 2 NA Intergenic L1PA10|LINE|L1 456132 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 476-241 chr6 110552617 110552957 + 2 NA Intergenic AluSx1|SINE|Alu -76174 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 154-15 chr11 22540449 22540575 + 2 NA Intergenic Intergenic -48493 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 285-101 chr13 69491834 69492110 + 2 NA Intergenic L1MA8|LINE|L1 269626 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 290-279 chr3 60424982 60425164 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 192797 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 214-160 chr2 54027764 54027964 + 2 NA intron (NM_001320587, intron 2 of 5) AluSx1|SINE|Alu 56751 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 313-317 chr21 44493046 44493323 + 2 NA Intergenic Intergenic 7613 NR_155204 111216286 Hs.572852 NR_155204 LINC02575 - long intergenic non-protein coding RNA 2575 ncRNA 205-276 chr8 105046930 105047041 + 2 NA Intergenic L1MEg|LINE|L1 -271453 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 280-267 chr3 162096389 162096617 + 2 NA Intergenic Intergenic 599695 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 307-418 chr6 40513678 40513926 + 2 NA intron (NM_020737, intron 1 of 2) L2a|LINE|L2 73562 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 418-246 chr6 128532602 128533014 + 2 NA Intergenic Intergenic -12209 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 282-172 chr17 74134072 74134268 + 2 NA Intergenic MER39|LTR|ERV1 -69508 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 217-183 chr2 117246059 117246245 + 2 NA Intergenic Intergenic -568539 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 324-88 chr11 54844797 54844986 + 2 NA Intergenic ALR/Alpha|Satellite|centr 138059 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 266-249 chr3 67184788 67184949 + 2 NA Intergenic Intergenic -40596 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 117-30 chr4 116980872 116980939 + 2 NA Intergenic Intergenic 104671 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 354-462 chr8 84753072 84753310 + 2 NA intron (NM_001287244, intron 1 of 7) MSTA-int|LTR|ERVL-MaLR 47264 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 695-28 chr12 111246846 111247342 + 2 NA intron (NM_015267, intron 3 of 21) MIRb|SINE|MIR -57048 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 360-447 chr7 126170693 126170914 + 2 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat 887381 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 405 chr1 4362263 4362606 + 2 NA Intergenic Intergenic -49617 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 396-279 chr5 51287440 51287758 + 2 NA Intergenic MIR|SINE|MIR 95733 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 291-42 chr10 29823845 29824100 + 2 NA Intergenic Intergenic -87036 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 257-33 chr10 12829125 12829289 + 2 NA 3' UTR (NM_153498, exon 11 of 11) 3' UTR (NM_153498, exon 11 of 11) -103854 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 594-11 chr1 187718094 187718494 + 2 NA Intergenic Intergenic 274666 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 494-266 chr7 52927433 52927808 + 2 NA Intergenic Intergenic -108013 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 369-243 chr20 39359863 39360109 + 2 NA Intergenic Intergenic -135238 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 248-418 chr8 139457617 139457831 + 2 NA Intergenic Intergenic 245399 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 250-410 chr7 145658372 145658552 + 2 NA Intergenic Intergenic -822409 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 225-30 chr10 31820209 31820383 + 2 NA intron (NM_001270696, intron 10 of 17) intron (NM_001270696, intron 10 of 17) 88630 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 494-10 chr1 116264225 116264559 + 2 NA Intergenic Intergenic -108852 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 305-327 chr22 33464722 33464922 + 2 NA intron (NM_133642, intron 6 of 14) L1ME3E|LINE|L1 -28153 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 654-83 chr3 156245257 156245876 + 2 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) -17683 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 570-84 chr16 77811369 77811816 + 2 NA intron (NM_020927, intron 1 of 8) MIRb|SINE|MIR 23028 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 291-384 chr6 66116446 66116676 + 2 NA Intergenic L1MC3|LINE|L1 328682 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 295-146 chr15 26602586 26602848 + 2 NA intron (NM_001191320, intron 2 of 6) L1MA2|LINE|L1 26373 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 552-25 chr10 95770802 95771320 + 2 NA intron (NR_038444, intron 5 of 5) L1ME4c|LINE|L1 14898 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 193-20 chr1 228496272 228496458 + 2 NA TTS (NM_001010858) TTS (NM_001010858) 8983 NM_001010858 149603 Hs.356377 NM_001010858 ENSG00000168159 RNF187 RACO-1|RACO1 ring finger protein 187 protein-coding 357-139 chr15 100215173 100215396 + 2 NA intron (NM_139057, intron 7 of 21) intron (NM_139057, intron 7 of 21) 126691 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 398-296 chr6 65206567 65206922 + 2 NA intron (NM_001292009, intron 12 of 43) L1PA15-16|LINE|L1 -94674 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 316-524 chr7 92377538 92377838 + 2 NA intron (NM_019004, intron 11 of 19) L1M5|LINE|L1 59626 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 228-45 chr10 103954420 103954626 + 2 NA Intergenic L1ME1|LINE|L1 -12617 NM_001304743 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 526-29 chr10 129430071 129430448 + 2 NA Intergenic Intergenic -36982 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 316-295 chr2 157074400 157074644 + 2 NA Intergenic LTR33|LTR|ERVL -183183 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 181-32 chr12 24701254 24701382 + 2 NA Intergenic L1MB7|LINE|L1 -117150 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 223-205 chr3 44242549 44242733 + 2 NA intron (NM_001145030, intron 1 of 19) intron (NM_001145030, intron 1 of 19) 755 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 400-105 chr15 27128566 27128795 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 32639 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 311-22 chr1 114103728 114103974 + 2 NA intron (NM_001366223, intron 3 of 7) intron (NM_001366223, intron 3 of 7) 48589 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 778-13 chr11 22678728 22679395 + 2 NA intron (NM_005256, intron 1 of 6) intron (NM_005256, intron 1 of 6) 4287 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 300-219 chr2 205084684 205084916 + 2 NA intron (NM_205863, intron 4 of 21) L1M5|LINE|L1 539325 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 335-536 chr8 86263170 86263396 + 2 NA Intergenic MER21C|LTR|ERVL -32902 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 342-59 chr10 42390478 42390780 + 2 NA Intergenic HERVFH19-int|LTR|ERV1 -22584 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 441-125 chr2 66341205 66341513 + 2 NA Intergenic AluSz|SINE|Alu 16969 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 335-347 chr3 61601670 61601929 + 2 NA intron (NM_002841, intron 1 of 29) L2a|LINE|L2 40228 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 129-70 chr7 39554352 39554455 + 2 NA Intergenic Intergenic -12001 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 343-561 chr8 133333832 133334122 + 2 NA Intergenic L1ME4b|LINE|L1 -36673 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 386-226 chr3 1385618 1385854 + 2 NA exon (NM_001349356, exon 19 of 22) exon (NM_001349356, exon 19 of 22) 292712 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 338-82 chr10 111039629 111039856 + 2 NA Intergenic L1M1|LINE|L1 -37287 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 366-292 chr3 183290986 183291299 + 2 NA intron (NM_015078, intron 13 of 29) intron (NM_015078, intron 13 of 29) 37889 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 261-142 chr17 43447457 43447627 + 2 NA intron (NR_146952, intron 1 of 1) intron (NR_146952, intron 1 of 1) 2736 NR_031751 100313779 NR_031751 ENSG00000284344 MIR2117 - microRNA 2117 ncRNA 256-328 chr5 104790273 104790481 + 2 NA Intergenic Intergenic -309097 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 481-145 chr2 79323890 79324246 + 2 NA Intergenic Intergenic -164315 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 598-135 chr8 4976628 4977127 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 18037 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 283-305 chr3 187755070 187755260 + 2 NA Intergenic Intergenic -9697 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 308-407 chr6 1996486 1996687 + 2 NA intron (NM_001253846, intron 4 of 10) MLT1J|LTR|ERVL-MaLR 179405 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 252-98 chr12 127143304 127143499 + 2 NA Intergenic L1PA8A|LINE|L1 -83004 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 288-97 chr13 69495381 69495631 + 2 NA Intergenic Intergenic 273160 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 568-153 chr4 150306756 150307128 + 2 NA intron (NM_001367550, intron 52 of 56) MIRc|SINE|MIR 228497 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 261-330 chr6 23236372 23236576 + 2 NA Intergenic L1MC2|LINE|L1 -518550 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 291-163 chr16 72682953 72683152 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -18082 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 330-63 chr10 76263323 76263590 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 480695 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 271-467 chr8 136539136 136539370 + 2 NA intron (NR_147196, intron 2 of 5) Charlie1a|DNA|hAT-Charlie 8455 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 216-13 chr1 93955829 93955980 + 2 NA Intergenic L1MA4A|LINE|L1 -46306 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 521-243 chr7 97775401 97775867 + 2 NA Intergenic HAL1b|LINE|L1 43548 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 342-387 chr5 27617566 27617843 + 2 NA Intergenic L1PA8|LINE|L1 145412 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 337-166 chr15 26359677 26359914 + 2 NA Intergenic Intergenic 243982 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 384-265 chr4 70568142 70568416 + 2 NA Intergenic L1PA14|LINE|L1 -23977 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 251-261 chr4 18336406 18336541 + 2 NA Intergenic L1MEi|LINE|L1 -314598 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 432-181 chr3 97612227 97612594 + 2 NA intron (NM_001080448, intron 13 of 17) intron (NM_001080448, intron 13 of 17) -152111 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 281-307 chr4 33211740 33212014 + 2 NA Intergenic Intergenic 828016 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 277-170 chr19 31287424 31287696 + 2 NA intron (NM_020856, intron 1 of 1) GA-rich|Low_complexity|Low_complexity 61876 NM_020856 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 834-32 chr3 189011123 189011768 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -63806 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 362-223 chr2 111647579 111647920 + 2 NA Intergenic L1MB4|LINE|L1 123385 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 236-61 chr11 11836157 11836356 + 2 NA Intergenic L1MC1|LINE|L1 -5167 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 755-29 chr18 59289525 59289959 + 2 NA Intergenic L1ME2z|LINE|L1 -16288 NM_013435 30062 Hs.278957 NM_013435 ENSG00000134438 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 285-130 chr14 90942030 90942260 + 2 NA intron (NM_001322234, intron 5 of 16) intron (NM_001322234, intron 5 of 16) 117979 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 367-459 chr8 108133338 108133601 + 2 NA Intergenic Intergenic -49849 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 131-4 chr1 83596553 83596656 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 150550 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 816-23 chr2 30546939 30547578 + 2 NA intron (NM_182551, intron 4 of 6) intron (NM_182551, intron 4 of 6) 100012 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 379-127 chr18 9916085 9916416 + 2 NA intron (NM_194434, intron 1 of 5) intron (NM_194434, intron 1 of 5) 2234 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 174-111 chr5 81880840 81881001 + 2 NA Intergenic Intergenic -91103 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 631-45 chr16 8347270 8347650 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 242378 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 113 chr1 14889313 14889403 + 2 NA intron (NM_201628, intron 1 of 14) L1ME3F|LINE|L1 -34771 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 212-273 chr6 13584721 13584829 + 2 NA intron (NM_001242827, intron 3 of 8) intron (NM_001242827, intron 3 of 8) 10174 NM_012241 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 200-130 chr2 70993221 70993321 + 2 NA intron (NM_144582, intron 2 of 5) intron (NM_144582, intron 2 of 5) 1602 NM_144582 113419 Hs.516087 NM_144582 ENSG00000144043 TEX261 TEG-261 testis expressed 261 protein-coding 314-408 chr4 30711711 30711986 + 2 NA Intergenic L1M2|LINE|L1 -8521 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 319-111 chr12 80575227 80575507 + 2 NA intron (NM_001145026, intron 25 of 44) AluJo|SINE|Alu 131132 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 430-316 chr8 114464408 114464682 + 2 NA Intergenic Intergenic -1027606 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 382-300 chr4 73325258 73325473 + 2 NA Intergenic MER21-int|LTR|ERVL -66567 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 321-107 chr11 103416636 103416823 + 2 NA intron (NM_001377, intron 84 of 88) L1P3|LINE|L1 307303 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 388-261 chr4 156485904 156486227 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 485734 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 251-3 chr1 47041701 47041880 + 2 NA intron (NM_178033, intron 8 of 11) L1MA8|LINE|L1 18121 NM_178033 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 276-154 chr14 77054532 77054724 + 2 NA intron (NR_110554, intron 1 of 3) L2a|LINE|L2 13579 NR_110554 283575 Hs.651736 NR_110554 ENSG00000246548 LINC02288 - long intergenic non-protein coding RNA 2288 ncRNA 144-67 chr4 67233631 67233732 + 2 NA Intergenic L2a|LINE|L2 188319 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 230-268 chr4 84840296 84840466 + 2 NA intron (NM_014991, intron 6 of 67) intron (NM_014991, intron 6 of 67) -125235 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 340-424 chr4 178219707 178219935 + 2 NA Intergenic Intergenic -311885 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 295-118 chr13 75256884 75257099 + 2 NA Intergenic Intergenic 16403 NR_132375 106144536 Hs.591226 NR_132375 LINC01078 - long intergenic non-protein coding RNA 1078 ncRNA 532-30 chr11 20956945 20957304 + 2 NA intron (NM_201551, intron 11 of 18) intron (NM_201551, intron 11 of 18) 287538 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 371-26 chr1 199173111 199173468 + 2 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 24691 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 410-199 chr3 105922951 105923277 + 2 NA Intergenic Intergenic -53713 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 174-146 chr8 105183442 105183554 + 2 NA Intergenic L1PA16|LINE|L1 -134940 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 455-219 chr5 56338812 56339259 + 2 NA Intergenic LTR78|LTR|ERV1 -105705 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 197-15 chr1 177291495 177291681 + 2 NA Intergenic L1MB7|LINE|L1 -59998 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 286-23 chr1 186314395 186314572 + 2 NA TTS (NM_001127709) TTS (NM_001127709) 18210 NM_005807 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 465-165 chr22 33090899 33091205 + 2 NA Intergenic CR1-3_Croc|LINE|CR1 -17477 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 255-21 chr10 19857684 19857907 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 41363 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 206-65 chr14 52345046 52345223 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 30822 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 262-89 chr11 113974474 113974707 + 2 NA promoter-TSS (NR_046363) promoter-TSS (NR_046363) -485 NR_046363 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 423-249 chr6 142411611 142411926 + 2 NA intron (NM_198569, intron 18 of 24) intron (NM_198569, intron 18 of 24) 109761 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 259-88 chr12 41046361 41046566 + 2 NA intron (NM_001843, intron 23 of 23) Charlie4a|DNA|hAT-Charlie 138106 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 313-433 chr5 73416479 73416720 + 2 NA Intergenic L1ME4a|LINE|L1 32178 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 132-73 chr6 126511871 126511969 + 2 NA Intergenic Intergenic 27289 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 778-50 chr4 76692645 76693315 + 2 NA intron (NM_020859, intron 2 of 10) L1ME2|LINE|L1 117429 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 340-363 chr3 83488437 83488737 + 2 NA Intergenic Intergenic 1380988 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 246-309 chr4 181733372 181733543 + 2 NA Intergenic Intergenic 96516 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 495-147 chr22 43494739 43495156 + 2 NA intron (NM_001362786, intron 4 of 6) MLT1A0|LTR|ERVL-MaLR -21307 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 376-243 chr3 54686687 54687042 + 2 NA intron (NM_018398, intron 11 of 37) MER119|DNA|hAT-Charlie -47007 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 654-106 chr6 64696263 64696830 + 2 NA intron (NM_001292009, intron 22 of 43) L1M2|LINE|L1 -604872 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 318-449 chr5 84251454 84251719 + 2 NA intron (NM_005711, intron 2 of 10) intron (NM_005711, intron 2 of 10) 133281 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 224-307 chr8 4094799 4094955 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 900037 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 330-280 chr2 108012650 108012822 + 2 NA 3' UTR (NM_001305007, exon 9 of 9) 3' UTR (NM_001305007, exon 9 of 9) 26212 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 137-20 chr12 112704690 112704783 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -9560 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 493-6 chr1 62544900 62545280 + 2 NA intron (NM_001367561, intron 22 of 49) intron (NM_001367561, intron 22 of 49) -52430 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 219-171 chr2 95280037 95280198 + 2 NA intron (NM_144707, intron 11 of 23) intron (NM_144707, intron 11 of 23) 5668 NM_001321070 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 329-151 chr14 25793243 25793468 + 2 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat -743058 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 303-304 chr4 10229417 10229716 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -112767 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 329-564 chr8 37211460 37211648 + 2 NA Intergenic L1MB8|LINE|L1 282359 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 456-244 chr5 23497519 23497886 + 2 NA Intergenic L1MC4a|LINE|L1 -9907 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 356-428 chr6 103215043 103215282 + 2 NA Intergenic Intergenic 1644384 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 257-413 chr8 103672180 103672400 + 2 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -146930 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 301-86 chr12 16136503 16136745 + 2 NA Intergenic Intergenic 141061 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 372-179 chr16 78965606 78965794 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 635037 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 249-258 chr3 34914267 34914466 + 2 NA intron (NR_110817, intron 2 of 3) L1PB3|LINE|L1 479657 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 413-88 chr14 76894211 76894480 + 2 NA Intergenic Intergenic -65293 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 538-110 chr2 70817466 70817835 + 2 NA intron (NM_001321308, intron 3 of 6) intron (NM_001321308, intron 3 of 6) 2949 NM_001258027 165530 Hs.681239 NM_173535 ENSG00000152672 CLEC4F CLECSF13|KCLR C-type lectin domain family 4 member F protein-coding 298-151 chr16 22176308 22176513 + 2 NA intron (NM_001365288, intron 6 of 11) L1MA5|LINE|L1 13879 NM_001365288 100288072 NM_001365288 SDR42E2 - short chain dehydrogenase/reductase family 42E, member 2 protein-coding 652-117 chr8 131213808 131214385 + 2 NA Intergenic Intergenic -173187 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 244-89 chr14 42112507 42112667 + 2 NA Intergenic L1MD3|LINE|L1 505731 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 199-247 chr8 126659450 126659618 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -101056 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 337-61 chr10 81377683 81377968 + 2 NA Intergenic L1P4|LINE|L1 -497369 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 258-305 chr4 186519410 186519571 + 2 NA Intergenic L1PBa|LINE|L1 -18432 NR_033901 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 220-145 chr19 44188517 44188672 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 23430 NM_001032372 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 338-188 chr15 93533448 93533710 + 2 NA Intergenic Intergenic -322981 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 524-240 chr7 87613361 87613810 + 2 NA intron (NM_001348945, intron 2 of 31) L1PA16|LINE|L1 -12701 NM_001348946 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 273-342 chr4 175415111 175415345 + 2 NA Intergenic L1MA7|LINE|L1 372448 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 307-50 chr10 42317197 42317398 + 2 NA Intergenic Intergenic 50748 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 351-457 chr7 97894389 97894598 + 2 NA intron (NM_001352496, intron 1 of 13) L1M2|LINE|L1 -21951 NM_183356 440 Hs.489207 NM_001673 ENSG00000070669 ASNS ASNSD|TS11 asparagine synthetase (glutamine-hydrolyzing) protein-coding 255-363 chr6 128607384 128607582 + 2 NA Intergenic Intergenic -86884 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 746-85 chr8 109065062 109065508 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -21343 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 218-26 chr10 52447348 52447513 + 2 NA Intergenic Arthur1A|DNA|hAT-Tip100 7842 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 562-137 chr3 26968372 26968797 + 2 NA Intergenic Intergenic 247939 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 359-202 chr18 70214751 70215040 + 2 NA Intergenic L1MB8|LINE|L1 -9208 NM_173630 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 371-60 chr10 132072497 132072813 + 2 NA intron (NM_001323086, intron 1 of 23) L1PB4|LINE|L1 6709 NM_001105521 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 200-66 chr13 99646313 99646484 + 2 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 3339 NR_036191 100422861 NR_036191 ENSG00000263615 MIR4306 mir-4306 microRNA 4306 ncRNA 571-113 chr3 117386976 117387389 + 2 NA Intergenic Intergenic 303743 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 579-83 chr20 14719835 14720361 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 165714 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 214-47 chr10 90130552 90130761 + 2 NA Intergenic Intergenic -173283 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 485-73 chr14 45589865 45590304 + 2 NA Intergenic Intergenic 125518 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 628-124 chr7 91181885 91182347 + 2 NA intron (NM_012395, intron 13 of 13) L1MC5|LINE|L1 -82317 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 317-508 chr8 134281598 134281810 + 2 NA Intergenic Intergenic -316367 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 480-210 chr4 47070788 47071111 + 2 NA intron (NM_000812, intron 3 of 8) L2a|LINE|L2 39382 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 251-200 chr20 14407756 14407936 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -70179 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 289-165 chr16 23166608 23166809 + 2 NA Intergenic L1MD2|LINE|L1 -16037 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 391-202 chr20 23268412 23268760 + 2 NA Intergenic Intergenic -82205 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 340-44 chr10 33984589 33984814 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -212021 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 341-566 chr9 89742745 89743003 + 2 NA Intergenic L1MB3|LINE|L1 103091 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 331-144 chr13 112013855 112014148 + 2 NA intron (NR_120392, intron 1 of 3) Tigger7|DNA|TcMar-Tigger 41691 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 407-172 chr21 7952222 7952437 + 2 NA Intergenic (CATTC)n|Satellite|Satellite -122697 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 219-175 chr2 107114348 107114547 + 2 NA Intergenic Intergenic -227338 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 259-80 chr11 101167954 101168196 + 2 NA Intergenic L1MEf|LINE|L1 -38262 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 288-54 chr10 67464647 67464857 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -61342 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 500-77 chr14 39534968 39535355 + 2 NA Intergenic Intergenic -102661 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 190-183 chr8 128393176 128393283 + 2 NA Intergenic Intergenic 171450 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 360-306 chr3 90624323 90624624 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1516852 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 629-140 chr9 68664851 68665336 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -40147 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 331-163 chr14 72640145 72640398 + 2 NA intron (NM_001280542, intron 8 of 10) L2c|LINE|L2 123451 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 318-5 chr1 28954791 28955044 + 2 NA intron (NM_001166006, intron 1 of 14) Charlie23a|DNA|hAT-Charlie 40341 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 482-247 chr7 37595705 37596021 + 2 NA Intergenic L1MA3|LINE|L1 -87903 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 333-4 chr1 34234663 34234975 + 2 NA Intergenic Intergenic 57912 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 270-23 chr1 222640517 222640708 + 2 NA intron (NM_198551, intron 6 of 27) L1ME1|LINE|L1 -3691 NM_001324065 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 390-89 chr14 48451520 48451889 + 2 NA Intergenic Intergenic -656690 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 515-138 chr2 236288275 236288681 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -24133 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 341-130 chr12 119152382 119152607 + 2 NA intron (NM_194286, intron 10 of 12) L4_A_Mam|LINE|RTE-X 23990 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 154-97 chr7 7385783 7385878 + 2 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 130676 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 324-381 chr4 41524044 41524315 + 2 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -13978 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 403-71 chr12 34661338 34661600 + 2 NA Intergenic ALR/Alpha|Satellite|centr 638973 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 381-270 chr4 45495194 45495500 + 2 NA Intergenic L1ME2|LINE|L1 628707 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 251-122 chr16 73775283 73775469 + 2 NA Intergenic Intergenic 388571 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 302-426 chr7 152403398 152403641 + 2 NA intron (NM_170606, intron 1 of 58) AluSq2|SINE|Alu 32484 NM_170606 58508 Hs.647120 NM_021230 ENSG00000055609 KMT2C HALR|KLEFS2|MLL3 lysine methyltransferase 2C protein-coding 274-37 chr10 26450453 26450712 + 2 NA intron (NM_019043, intron 2 of 14) intron (NM_019043, intron 2 of 14) 12241 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 634-94 chr21 30252848 30253247 + 2 NA Intergenic L1MA3|LINE|L1 29903 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 670-68 chr2 153293835 153294264 + 2 NA Intergenic AluJb|SINE|Alu 184713 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 271-5 chr1 40493551 40493726 + 2 NA intron (NM_001320178, intron 5 of 5) LTR78|LTR|ERV1 -15081 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 305-435 chr5 53695052 53695219 + 2 NA Intergenic L1MA9|LINE|L1 124547 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 269-263 chr4 12916824 12917079 + 2 NA Intergenic Intergenic 567389 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 413-283 chr7 111122818 111123128 + 2 NA exon (NM_001099660, exon 4 of 4) exon (NM_001099660, exon 4 of 4) 31846 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 145-55 chr3 118088979 118089099 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -398114 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 334-472 chr6 135765230 135765403 + 2 NA Intergenic L1ME1|LINE|L1 -86385 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 467-304 chrX 64123944 64124258 + 2 NA Intergenic L1MA7|LINE|L1 81607 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 343-227 chr2 29486225 29486450 + 2 NA intron (NM_004304, intron 4 of 28) L2b|LINE|L2 -10960 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 566-162 chr5 170496326 170496804 + 2 NA intron (NM_001034838, intron 1 of 7) MIR|SINE|MIR -7455 NM_001034837 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 629-80 chr3 21570956 21571456 + 2 NA intron (NM_024697, intron 2 of 7) L1ME3|LINE|L1 28417 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 301-213 chr2 100223478 100223733 + 2 NA intron (NR_103730, intron 1 of 2) L2a|LINE|L2 15351 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 270-408 chr8 123561824 123562036 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -20724 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 307-317 chr3 157676069 157676246 + 2 NA Intergenic Intergenic 132813 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 340-331 chr21 25654909 25655122 + 2 NA intron (NR_072999, intron 1 of 9) L1MC5a|LINE|L1 15733 NM_001270407 58494 Hs.517227 NM_021219 ENSG00000154721 JAM2 C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM junctional adhesion molecule 2 protein-coding 253-94 chr12 14092485 14092706 + 2 NA Intergenic L1M4|LINE|L1 -112239 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 354-456 chr8 60279993 60280280 + 2 NA intron (NR_135821, intron 1 of 9) intron (NR_135821, intron 1 of 9) 1264 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 256-119 chr14 44630144 44630338 + 2 NA Intergenic Intergenic 122832 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 461-220 chr5 114966661 114967093 + 2 NA Intergenic L1MA9|LINE|L1 -193464 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 208-162 chr3 25979744 25979904 + 2 NA Intergenic L1MB8|LINE|L1 -106129 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 268-112 chr14 43878871 43879054 + 2 NA Intergenic Intergenic 628321 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 385-24 chr10 39253018 39253221 + 2 NA Intergenic ALR/Alpha|Satellite|centr 556523 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 341-289 chr20 15960839 15961149 + 2 NA intron (NM_001351663, intron 12 of 17) intron (NM_001351663, intron 12 of 17) 24888 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 322-530 chr8 88757020 88757307 + 2 NA Intergenic L2|LINE|L2 -429680 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 308-453 chr7 16963893 16964079 + 2 NA Intergenic Intergenic -82003 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 364-70 chr10 86344494 86344769 + 2 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) 22164 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 330-430 chr5 109296835 109297099 + 2 NA intron (NR_149040, intron 3 of 3) L1PB3|LINE|L1 29402 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 568-196 chr8 87646356 87646810 + 2 NA Intergenic L2|LINE|L2 227432 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 280-277 chr4 30684574 30684773 + 2 NA Intergenic Intergenic -35696 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 335-371 chr3 184750969 184751259 + 2 NA Intergenic Intergenic 22041 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LINC02069 - long intergenic non-protein coding RNA 2069 ncRNA 263-142 chr16 64945337 64945582 + 2 NA 3' UTR (NM_001308392, exon 14 of 14) 3' UTR (NM_001308392, exon 14 of 14) 176604 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 436-291 chr7 119939901 119940251 + 2 NA Intergenic L1ME2z|LINE|L1 -32701 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 365-314 chr5 28609488 28609801 + 2 NA Intergenic Intergenic -317226 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 303-139 chr15 25060753 25061021 + 2 NA intron (NR_146177, intron 28 of 147) intron (NR_146177, intron 28 of 147) 1350 NR_003319 100033416 NR_003319 ENSG00000275529 SNORD116-4 HBII-85-4 small nucleolar RNA, C/D box 116-4 snoRNA 193-44 chr12 18531072 18531228 + 2 NA intron (NM_001288774, intron 24 of 32) L2|LINE|L2 206359 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 285-310 chr4 102063852 102064066 + 2 NA intron (NM_017935, intron 13 of 16) intron (NM_017935, intron 13 of 16) 250117 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 332-599 chrY 56832388 56832656 + 2 NA Intergenic Intergenic -121733 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 256-370 chr6 145723649 145723899 + 2 NA intron (NM_001360071, intron 1 of 4) intron (NM_001360071, intron 1 of 4) -11095 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 457-88 chr17 35422998 35423420 + 2 NA intron (NM_001289009, intron 1 of 3) intron (NM_001289009, intron 1 of 3) 9291 NM_018042 55106 Hs.663548 NM_018042 ENSG00000172123 SLFN12 SLFN3 schlafen family member 12 protein-coding 241-296 chr5 37947675 37947825 + 2 NA promoter-TSS (NR_134262) promoter-TSS (NR_134262) -741 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 428-200 chr3 176197044 176197358 + 2 NA Intergenic L1MEc|LINE|L1 -47350 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 394-51 chr10 99150913 99151265 + 2 NA intron (NM_021828, intron 2 of 11) L1M4a1|LINE|L1 84786 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 232-343 chr7 12615022 12615161 + 2 NA intron (NR_156701, intron 4 of 14) intron (NR_156701, intron 4 of 14) 25568 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 544-48 chr11 106230996 106231397 + 2 NA Intergenic Intergenic -18823 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 329-477 chr5 135660777 135660983 + 2 NA intron (NM_001349335, intron 3 of 10) MIR|SINE|MIR -6945 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 281-441 chr8 121075059 121075256 + 2 NA Intergenic (TTATA)n|Simple_repeat|Simple_repeat -263111 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 331-125 chr12 106020081 106020302 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR 119842 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 275-110 chr14 50022611 50022763 + 2 NA intron (NR_131171, intron 6 of 8) MER63B|DNA|hAT-Blackjack -15167 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 180-13 chr1 225326820 225326981 + 2 NA intron (NM_001367479, intron 64 of 85) intron (NM_001367479, intron 64 of 85) 101138 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 545-199 chr6 15722385 15722770 + 2 NA Intergenic L3|LINE|CR1 -59519 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 611-133 chr6 168012315 168012794 + 2 NA Intergenic L1M2c|LINE|L1 -5319 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 577-170 chr6 64669573 64669922 + 2 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -631671 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 233-90 chr14 43896992 43897213 + 2 NA Intergenic Intergenic 610181 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 152-95 chr8 118791381 118791478 + 2 NA Intergenic Intergenic 160456 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 263-172 chr18 51966819 51966973 + 2 NA Intergenic Intergenic -373301 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 157-74 chr2 222359671 222359783 + 2 NA Intergenic Intergenic 39066 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 505-126 chr19 37818445 37818819 + 2 NA intron (NR_040013, intron 1 of 4) AluSc|SINE|Alu 1221 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 458-56 chr12 132854815 132855242 + 2 NA intron (NM_018223, intron 10 of 17) AluSz|SINE|Alu -26159 NM_001172557 2802 Hs.507333 NM_005895 ENSG00000090615 GOLGA3 GCP170|MEA-2 golgin A3 protein-coding 470-97 chr17 65463134 65463434 + 2 NA Intergenic Intergenic 5743 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 459-148 chr2 124040831 124041224 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 15740 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 225-251 chr4 124597088 124597264 + 2 NA Intergenic Intergenic -38742 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 270-365 chr7 88977426 88977614 + 2 NA intron (NM_181646, intron 1 of 3) L1MA3|LINE|L1 -181783 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 639-56 chr2 21459391 21459881 + 2 NA Intergenic Intergenic 251016 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 650-109 chr6 116824458 116825104 + 2 NA intron (NM_148963, intron 1 of 5) L1MA4A|LINE|L1 4276 NM_148963 222545 Hs.266745 NM_148963 ENSG00000173612 GPRC6A GPCR|bA86F4.3 G protein-coupled receptor class C group 6 member A protein-coding 436-268 chr6 71029507 71029939 + 2 NA Intergenic L1M7|LINE|L1 -72663 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 390-193 chr2 112144748 112145089 + 2 NA intron (NM_001128165, intron 1 of 6) L1M5|LINE|L1 6533 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 503-89 chr13 76376725 76377102 + 2 NA Intergenic L1MA4|LINE|L1 -441781 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 241-394 chr8 79415374 79415599 + 2 NA Intergenic L1MD2|LINE|L1 83298 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 377-396 chr8 67668490 67668803 + 2 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 77714 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 606-178 chrX 142592453 142592992 + 2 NA Intergenic Intergenic -387432 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 301-314 chr4 60262590 60262834 + 2 NA Intergenic Intergenic -659907 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 383-13 chr1 95341610 95341908 + 2 NA Intergenic Intergenic 10348 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 437-125 chr2 24540978 24541374 + 2 NA intron (NM_001362952, intron 1 of 23) L2a|LINE|L2 -43301 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 355-37 chr10 19081863 19082149 + 2 NA intron (NM_001142308, intron 2 of 39) L1M4|LINE|L1 33205 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 268-426 chr8 138923748 138923994 + 2 NA Intergenic Intergenic -9830 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 520-98 chr15 41061740 41062079 + 2 NA intron (NM_017553, intron 14 of 35) L1MEg|LINE|L1 54337 NR_104038 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 220-270 chr4 180464677 180464848 + 2 NA Intergenic (TAGA)n|Simple_repeat|Simple_repeat 694387 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 512-87 chr15 36190654 36191115 + 2 NA Intergenic L1ME3A|LINE|L1 264028 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 839-33 chr3 94489432 94490063 + 2 NA Intergenic Intergenic 426686 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 301-24 chr1 208771871 208772119 + 2 NA Intergenic L2b|LINE|L2 43307 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 369-371 chr6 155500507 155500718 + 2 NA Intergenic Intergenic -14232 NR_134596 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 436-41 chr10 115505808 115506163 + 2 NA intron (NM_207303, intron 24 of 28) MER4-int|LTR|ERV1 412620 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 371-78 chr12 14385208 14385533 + 2 NA promoter-TSS (NM_181352) promoter-TSS (NM_181352) 89 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 348-479 chr7 231485 231788 + 2 NA intron (NM_020223, intron 3 of 9) intron (NM_020223, intron 3 of 9) 39065 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 377-45 chr10 55682026 55682335 + 2 NA Intergenic L1MA6|LINE|L1 -54238 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 304-220 chr18 79498750 79498925 + 2 NA intron (NM_001278673, intron 8 of 8) L1M4|LINE|L1 -80445 NR_148949 284240 Hs.448912 NR_148949 LOC284240 - uncharacterized LOC284240 ncRNA 423-311 chr9 82371307 82371558 + 2 NA Intergenic Intergenic 382660 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 458-211 chr5 126095685 126095961 + 2 NA Intergenic AluSx1|SINE|Alu -83754 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 184-2 chr1 34574091 34574257 + 2 NA Intergenic Intergenic 95520 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 419-108 chr16 79366705 79367015 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 233877 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 369-345 chr5 165126273 165126607 + 2 NA Intergenic Intergenic 656161 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 203-211 chr7 7744277 7744430 + 2 NA intron (NM_001302350, intron 3 of 4) L1MB8|LINE|L1 -25746 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 572-188 chr8 139581423 139581838 + 2 NA Intergenic Intergenic 121493 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 402-313 chr7 28343752 28344066 + 2 NA intron (NM_182899, intron 1 of 9) L1MA6|LINE|L1 44588 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 538-20 chr1 216063650 216064164 + 2 NA intron (NM_206933, intron 30 of 71) MER6|DNA|TcMar-Tigger -8558 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 204-205 chr3 131753597 131753706 + 2 NA intron (NM_130808, intron 2 of 15) L1ME3G|LINE|L1 232280 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 305-349 chr3 84274188 84274411 + 2 NA Intergenic Intergenic 595276 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 277-380 chr7 62560167 62560342 + 2 NA Intergenic ALR/Alpha|Satellite|centr 743802 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 524-229 chr7 28664053 28664398 + 2 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -21908 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 354-440 chr7 94529692 94529989 + 2 NA intron (NM_001363427, intron 6 of 17) L2b|LINE|L2 20031 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 575-65 chr16 51564683 51565212 + 2 NA Intergenic L1MC4a|LINE|L1 -197572 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 347-323 chr3 133320757 133320960 + 2 NA intron (NM_001282865, intron 2 of 3) L1PB2|LINE|L1 -63737 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 326-90 chr11 14152274 14152501 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 189664 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 327-331 chr3 69823303 69823611 + 2 NA intron (NM_001354607, intron 2 of 10) MLT1A|LTR|ERVL-MaLR -42767 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 226-298 chr6 35694790 35694979 + 2 NA intron (NM_001145775, intron 2 of 11) MER58A|DNA|hAT-Charlie -5942 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 310-135 chr14 53867292 53867530 + 2 NA Intergenic L1ME3Cz|LINE|L1 81073 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 248-405 chr8 101598614 101598808 + 2 NA intron (NM_024915, intron 7 of 15) intron (NM_024915, intron 7 of 15) 106272 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 343-74 chr11 37589942 37590199 + 2 NA Intergenic L1MC1|LINE|L1 -348531 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 246-171 chr18 54934033 54934242 + 2 NA intron (NM_001143829, intron 7 of 11) intron (NM_001143829, intron 7 of 11) 23911 NM_001143829 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 282-149 chr15 87106057 87106250 + 2 NA Intergenic L1MA4A|LINE|L1 -117727 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 366-431 chr8 50695682 50695974 + 2 NA intron (NR_135797, intron 17 of 20) L1PB4|LINE|L1 531697 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 359-407 chr5 110392582 110392852 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 121198 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 308-138 chr14 44883648 44883912 + 2 NA Intergenic L1MA3|LINE|L1 -13495 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 359-349 chr4 23622209 23622462 + 2 NA Intergenic L1PA16|LINE|L1 258957 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 383-115 chr14 70872828 70873181 + 2 NA Intergenic Intergenic -34455 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 241-87 chr12 82039752 82039907 + 2 NA Intergenic Intergenic 86110 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 272-403 chr6 147072053 147072296 + 2 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -86751 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 349-311 chr22 22733536 22733769 + 2 NA Intergenic Intergenic 87340 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 443-175 chr20 18243504 18243746 + 2 NA Intergenic L1PBa|LINE|L1 -44603 NM_001282995 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 194-64 chr15 25927818 25927995 + 2 NA intron (NR_040082, intron 1 of 4) LTR56|LTR|ERV1 25546 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 496-297 chr8 132256623 132256927 + 2 NA intron (NM_004519, intron 1 of 14) L1M4|LINE|L1 -151510 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 385-194 chr2 180687780 180688101 + 2 NA Intergenic Intergenic -4164 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 296-446 chr7 97419144 97419341 + 2 NA Intergenic Intergenic 302649 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 534-190 chr5 19066320 19066765 + 2 NA Intergenic L2a|LINE|L2 819730 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 297-472 chr8 87453439 87453689 + 2 NA Intergenic L2a|LINE|L2 420451 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 336 chr1 1154132 1154419 + 2 NA Intergenic L1MEg|LINE|L1 -12829 NR_029639 406984 NR_029639 ENSG00000207730 MIR200B MIRN200B|mir-200b microRNA 200b ncRNA 513-281 chr8 82524527 82525019 + 2 NA Intergenic Intergenic -387331 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 469-80 chr14 33471246 33471649 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -237490 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 324-314 chr20 45713300 45713535 + 2 NA Intergenic L1M5|LINE|L1 -8237 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 293-426 chr8 35305193 35305415 + 2 NA intron (NM_080872, intron 1 of 16) L3b|LINE|CR1 69829 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 227-227 chr3 67865217 67865381 + 2 NA intron (NR_109992, intron 5 of 6) intron (NR_109992, intron 5 of 6) -126293 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 664-86 chr5 45244006 45244570 + 2 NA Intergenic L1PA13|LINE|L1 435341 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 219-107 chr15 24052400 24052523 + 2 NA intron (NR_126392, intron 4 of 5) L1MC3|LINE|L1 77314 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 663-15 chr11 25526752 25527252 + 2 NA Intergenic Intergenic -662121 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 369-256 chr22 48844486 48844670 + 2 NA Intergenic Intergenic -22192 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 156-55 chr2 81506268 81506399 + 2 NA Intergenic L1M5|LINE|L1 -39387 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 309-196 chr17 10864917 10865194 + 2 NA Intergenic Intergenic -26968 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 292-414 chr7 84354974 84355186 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -160291 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 389-129 chr17 4655853 4656131 + 2 NA Intergenic LTR12C|LTR|ERV1 -14314 NM_001140 246 Hs.73809 NM_001140 ENSG00000161905 ALOX15 12-LOX|15-LOX|15-LOX-1|LOG15 arachidonate 15-lipoxygenase protein-coding 236-50 chr10 79969692 79969877 + 2 NA Intergenic L1M2|LINE|L1 -20679 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 296-482 chr8 120702704 120702873 + 2 NA intron (NM_021021, intron 1 of 6) MIR|SINE|MIR -58465 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 360-376 chr5 118312899 118313172 + 2 NA Intergenic L1ME4a|LINE|L1 30461 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 589-88 chr3 85029560 85030070 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 32449 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 392-31 chr10 80805710 80805919 + 2 NA Intergenic LTR10B2|LTR|ERV1 156017 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 489-159 chr20 8933795 8934228 + 2 NA Intergenic Intergenic 102826 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 573-165 chr6 66024317 66024822 + 2 NA Intergenic L1MCa|LINE|L1 236690 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 381-193 chr2 57953089 57953302 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 45544 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 298-272 chr21 33313384 33313595 + 2 NA Intergenic MER57B2|LTR|ERV1 -11481 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 298-39 chr10 37250682 37250886 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -58402 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 201-128 chr2 166712693 166712824 + 2 NA Intergenic L1MB1|LINE|L1 -175729 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 266-390 chr7 32108949 32109210 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -37643 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 485-190 chr3 120118650 120118980 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -24368 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 905-4 chr11 50371123 50371827 + 2 NA Intergenic ALR/Alpha|Satellite|centr -37672 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 408-252 chr4 159293676 159293933 + 2 NA intron (NM_001351727, intron 1 of 24) intron (NM_001351727, intron 1 of 24) 25995 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 273-377 chr5 178499862 178500117 + 2 NA intron (NM_173465, intron 2 of 28) L1ME1|LINE|L1 90404 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 578-141 chr5 102063705 102064234 + 2 NA Intergenic L1MA10|LINE|L1 232315 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 228-164 chr2 74951524 74951721 + 2 NA Intergenic L1PA15|LINE|L1 -7021 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 301-85 chr12 15236563 15236842 + 2 NA Intergenic Intergenic -15285 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 317-43 chr10 22149109 22149384 + 2 NA Intergenic L1MA9|LINE|L1 60737 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 214-244 chr4 122551582 122551732 + 2 NA Intergenic Intergenic -67326 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 456-104 chr15 57209949 57210381 + 2 NA intron (NM_207038, intron 8 of 19) L2a|LINE|L2 -9265 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 320-275 chr2 128078584 128078870 + 2 NA Intergenic L1MC4a|LINE|L1 -12473 NM_020120 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 721-67 chr5 12658810 12659355 + 2 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) -8777 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 336-40 chr1 188356731 188356937 + 2 NA Intergenic L1MC3|LINE|L1 913206 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 471-180 chr3 196395184 196395480 + 2 NA intron (NM_015562, intron 3 of 10) intron (NM_015562, intron 3 of 10) -36053 NR_046745 100874034 Hs.617990 NR_046745 UBXN7-AS1 - UBXN7 antisense RNA 1 ncRNA 284-249 chr22 33754044 33754279 + 2 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) 29175 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 266-214 chr2 241044022 241044234 + 2 NA intron (NM_001080437, intron 8 of 31) L1MEf|LINE|L1 45510 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 216-103 chr14 79996614 79996756 + 2 NA Intergenic Intergenic -214734 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 199-149 chr21 34214951 34215095 + 2 NA Intergenic AluSx1|SINE|Alu 34346 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 475-83 chr14 82883239 82883561 + 2 NA Intergenic Intergenic 240768 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 218-168 chr2 130779320 130779500 + 2 NA Intergenic L1MB4|LINE|L1 23066 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 405-81 chr14 30824092 30824397 + 2 NA Intergenic L1MC5a|LINE|L1 -50291 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 369-173 chr19 28540398 28540620 + 2 NA intron (NR_110759, intron 5 of 9) AluSx|SINE|Alu -66179 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 292-158 chr16 9512776 9513021 + 2 NA Intergenic Intergenic -57393 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 149-51 chr2 60158067 60158173 + 2 NA Intergenic MIR|SINE|MIR 224916 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 299-117 chr13 19291556 19291790 + 2 NA intron (NR_027248, intron 14 of 20) intron (NR_027248, intron 14 of 20) 53300 NR_027248 100101938 Hs.129283 NR_027248 ANKRD26P3 LINC00414 ankyrin repeat domain 26 pseudogene 3 pseudo 511-270 chr8 131544551 131544952 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -359342 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 376-334 chr5 132362152 132362445 + 2 NA intron (NR_110997, intron 3 of 7) L1MB3|LINE|L1 3301 NR_037500 100500865 NR_037500 ENSG00000263597 MIR3936 mir-3936 microRNA 3936 ncRNA 217 chr1 3344825 3345007 + 2 NA intron (NM_022114, intron 3 of 16) L1MEb|LINE|L1 -109749 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 224-291 chr7 7503571 7503747 + 2 NA intron (NM_001037763, intron 11 of 34) intron (NM_001037763, intron 11 of 34) 32214 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 316-305 chr2 214119329 214119520 + 2 NA intron (NR_047660, intron 13 of 14) intron (NR_047660, intron 13 of 14) -291630 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 561-18 chr10 18761382 18761781 + 2 NA Intergenic Intergenic 102150 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 179-11 chr11 42834904 42835041 + 2 NA Intergenic MIR|SINE|MIR 434397 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 517-149 chr2 185850627 185851029 + 2 NA Intergenic L1M4c|LINE|L1 -50677 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 409-98 chr15 93265845 93266131 + 2 NA Intergenic AluJo|SINE|Alu 59922 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 328-265 chr2 82649518 82649698 + 2 NA Intergenic L1MB7|LINE|L1 -207195 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 636-62 chr18 69242612 69243236 + 2 NA Intergenic Intergenic -157964 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 334-111 chr12 63072275 63072472 + 2 NA Intergenic Intergenic 80437 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 391-75 chr12 42976313 42976568 + 2 NA Intergenic MIR|SINE|MIR -178875 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 308-259 chr2 228617849 228618024 + 2 NA Intergenic MER21C|LTR|ERVL -6541 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 186-158 chr8 74346105 74346267 + 2 NA Intergenic Intergenic -4197 NM_001362929 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 520-51 chr11 54943124 54943486 + 2 NA Intergenic ALR/Alpha|Satellite|centr 236473 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 342-457 chr6 66538924 66539113 + 2 NA Intergenic Intergenic 751139 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 740-74 chr8 62811283 62811729 + 2 NA intron (NM_001304533, intron 4 of 6) L1MD1|LINE|L1 -166355 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 556-30 chr10 123708827 123709347 + 2 NA Intergenic Intergenic 42732 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 402-205 chr3 23976875 23977153 + 2 NA intron (NM_005126, intron 7 of 7) intron (NM_005126, intron 7 of 7) 30893 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 376-202 chr2 183931058 183931248 + 2 NA Intergenic Intergenic -447822 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 267-151 chr18 5748172 5748381 + 2 NA promoter-TSS (NR_038839) promoter-TSS (NR_038839) -543 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 321-85 chr10 130880991 130881206 + 2 NA Intergenic Intergenic 81570 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 331-409 chr5 14096884 14097080 + 2 NA Intergenic L1MB7|LINE|L1 -46360 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 390-5 chr1 38251422 38251809 + 2 NA Intergenic FLAM_C|SINE|Alu -36848 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 440-23 chr10 44946781 44947016 + 2 NA intron (NR_033842, intron 1 of 7) intron (NR_033842, intron 1 of 7) 12791 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 265-287 chr4 180366703 180366918 + 2 NA Intergenic Intergenic 792339 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 248-84 chr12 33996199 33996323 + 2 NA Intergenic Intergenic -26235 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 224-281 chr6 86966163 86966343 + 2 NA intron (NM_000865, intron 1 of 1) intron (NM_000865, intron 1 of 1) 28725 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 195-234 chr7 159095519 159095620 + 2 NA intron (NR_130758, intron 4 of 12) intron (NR_130758, intron 4 of 12) 1635 NM_001308259 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 248-185 chr2 71441162 71441352 + 2 NA Intergenic L1MD2|LINE|L1 -12304 NM_001130979 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 305-94 chr11 34696003 34696209 + 2 NA Intergenic L1PA15|LINE|L1 63540 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 298-494 chr9 31606782 31607011 + 2 NA Intergenic Intergenic -225406 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 205-146 chr2 126498791 126498936 + 2 NA Intergenic LTR9D|LTR|ERV1 -157072 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 458-137 chr2 126305985 126306310 + 2 NA Intergenic L1MB2|LINE|L1 -188162 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 225-233 chr4 31902459 31902651 + 2 NA Intergenic Intergenic -94824 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 257-207 chr2 131109673 131109856 + 2 NA intron (NM_001309448, intron 1 of 6) HAL1|LINE|L1 4917 NM_001267063 55041 Hs.469944 NM_017958 ENSG00000115762 PLEKHB2 EVT2 pleckstrin homology domain containing B2 protein-coding 320-242 chr19 51773897 51774115 + 2 NA Intergenic L1MC1|LINE|L1 10617 NM_001462 2358 Hs.99855 NM_001462 ENSG00000171049 FPR2 ALXR|FMLP-R-II|FMLPX|FPR2A|FPRH1|FPRH2|FPRL1|HM63|LXA4R formyl peptide receptor 2 protein-coding 221-263 chr6 67588652 67588835 + 2 NA Intergenic L1MCa|LINE|L1 -466608 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 523-142 chr2 164648719 164649152 + 2 NA Intergenic L1MB3|LINE|L1 -27453 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 147-67 chr4 133065830 133065947 + 2 NA Intergenic Intergenic 83228 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 491-52 chr12 92511170 92511513 + 2 NA Intergenic Intergenic 44662 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 202-103 chr19 27861582 27861724 + 2 NA intron (NR_146734, intron 1 of 7) HSAT4|Satellite|centr -67713 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 295-100 chr12 61137134 61137309 + 2 NA Intergenic Intergenic 1055618 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 320-191 chr16 62618429 62618617 + 2 NA Intergenic L1PB4|LINE|L1 -582085 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 363-358 chr5 44345825 44346166 + 2 NA intron (NM_004465, intron 1 of 2) L2a|LINE|L2 -42737 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 374-48 chr11 40527026 40527283 + 2 NA intron (NM_020929, intron 2 of 4) L1ME3A|LINE|L1 -234024 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 485-290 chr8 110922221 110922578 + 2 NA Intergenic MER41B|LTR|ERV1 105034 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 276-380 chr5 126075535 126075703 + 2 NA Intergenic Intergenic -103958 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 336-242 chr19 33710137 33710433 + 2 NA intron (NM_001127895, intron 3 of 4) L1MB7|LINE|L1 25757 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 598-74 chr2 150627028 150627478 + 2 NA Intergenic Intergenic -1644 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 290-305 chr4 19444069 19444225 + 2 NA Intergenic L1MA4A|LINE|L1 -807758 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 383-62 chr11 101089209 101089586 + 2 NA intron (NR_073142, intron 2 of 6) MER113A|DNA|hAT-Charlie 39666 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 174-122 chr6 44182317 44182405 + 2 NA intron (NM_007058, intron 19 of 22) intron (NM_007058, intron 19 of 22) 23541 NM_007058 11131 Hs.225953 NM_007058 ENSG00000137225 CAPN11 calpain11 calpain 11 protein-coding 182-67 chr16 78655450 78655577 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 555859 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 363-465 chr8 139205740 139206022 + 2 NA Intergenic Intergenic -291840 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 236-199 chr2 234141103 234141316 + 2 NA Intergenic Intergenic 90507 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 342-160 chr15 57290896 57291138 + 2 NA 3' UTR (NM_001322159, exon 21 of 21) 3' UTR (NM_001322159, exon 21 of 21) -9348 NR_024433 283663 Hs.181297 NR_024433 ENSG00000247982 LINC00926 - long intergenic non-protein coding RNA 926 ncRNA 701-89 chr7 112047686 112048202 + 2 NA intron (NM_001363540, intron 1 of 52) AluJr|SINE|Alu 158455 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 364-332 chr5 17803475 17803792 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -3641 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 412-51 chr11 38985568 38985779 + 2 NA Intergenic L1M2|LINE|L1 336815 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 503-44 chr10 112846000 112846378 + 2 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 22693 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 510-9 chr1 93865757 93866095 + 2 NA TTS (NM_014597) TTS (NM_014597) 13280 NM_014597 30836 Hs.85769 NM_014597 ENSG00000067334 DNTTIP2 ERBP|FCF2|HSU15552|LPTS-RP2|TdIF2 deoxynucleotidyltransferase terminal interacting protein 2 protein-coding 116-3 chr1 219342906 219342985 + 2 NA Intergenic Intergenic 167976 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 348-436 chr5 159710056 159710311 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 161201 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 275-381 chr9 29913896 29914100 + 2 NA Intergenic Intergenic 494456 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 380-324 chr5 167461468 167461734 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -112058 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 434-136 chr2 31044402 31044748 + 2 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 85065 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 527-62 chr12 59465790 59466200 + 2 NA Intergenic L1MB7|LINE|L1 -130034 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 278-46 chr10 120575411 120575575 + 2 NA intron (NR_134516, intron 4 of 4) intron (NR_134516, intron 4 of 4) -22456 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 389-285 chr5 42684542 42684867 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) -72114 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 650-14 chr11 96997620 96998035 + 2 NA Intergenic Intergenic 489402 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 227-52 chr10 105530477 105530686 + 2 NA Intergenic Intergenic 289752 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 306-527 chr8 131617071 131617269 + 2 NA Intergenic L1MC3|LINE|L1 -286923 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 389-34 chr10 64247850 64248157 + 2 NA Intergenic L1MEg|LINE|L1 -577525 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 615-83 chr3 33068690 33069133 + 2 NA exon (NM_001317040, exon 4 of 17) exon (NM_001317040, exon 4 of 17) 27921 NM_001079811 2720 Hs.443031 NM_000404 ENSG00000170266 GLB1 EBP|ELNR1|MPS4B galactosidase beta 1 protein-coding 353-208 chr18 13957802 13957998 + 2 NA Intergenic L1PA14|LINE|L1 -42193 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 117-48 chr9 84928083 84928160 + 2 NA intron (NM_001018064, intron 13 of 17) intron (NM_001018064, intron 13 of 17) 222220 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 267-330 chr5 56546439 56546586 + 2 NA intron (NR_161255, intron 2 of 5) intron (NR_161255, intron 2 of 5) 59744 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 300-157 chr17 69545266 69545469 + 2 NA 3' UTR (NM_002758, exon 12 of 12) 3' UTR (NM_002758, exon 12 of 12) 43105 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 516-77 chr15 23987686 23988060 + 2 NA intron (NR_126392, intron 3 of 5) HERV1_LTRe|LTR|ERV1 12726 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 555-50 chr13 105642850 105643304 + 2 NA Intergenic Intergenic -63753 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 538-264 chrX 98171766 98172186 + 2 NA Intergenic Intergenic -607441 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 206-119 chr2 100050410 100050575 + 2 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 55091 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 556-112 chr2 175273423 175273813 + 2 NA Intergenic Intergenic -91908 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 243-346 chr5 8265213 8265446 + 2 NA Intergenic (ATAA)n|Simple_repeat|Simple_repeat 192235 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 372-19 chr1 100571353 100571592 + 2 NA Intergenic L1PA14|LINE|L1 33333 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 313-189 chr16 76378067 76378261 + 2 NA intron (NR_136213, intron 3 of 23) L1PB4|LINE|L1 68312 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 701-20 chr13 95695637 95696005 + 2 NA intron (NM_006260, intron 1 of 11) intron (NM_006260, intron 1 of 11) 18682 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 287-365 chr6 129854798 129854972 + 2 NA intron (NM_001010876, intron 1 of 4) intron (NM_001010876, intron 1 of 4) 6430 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 118-27 chr2 116713297 116713393 + 2 NA Intergenic Intergenic -1101346 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 270-15 chr1 160656081 160656314 + 2 NA Intergenic Intergenic -8886 NM_003037 6504 Hs.523660 NM_003037 ENSG00000117090 SLAMF1 CD150|CDw150|SLAM signaling lymphocytic activation molecule family member 1 protein-coding 254-338 chr5 179144920 179145148 + 2 NA intron (NM_014244, intron 10 of 21) L1MB7|LINE|L1 84661 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 312-566 chrX 111430025 111430269 + 2 NA Intergenic Intergenic -17955 NM_001369373 1641 Hs.34780 NM_000555 ENSG00000077279 DCX DBCN|DC|LISX|SCLH|XLIS doublecortin protein-coding 218-10 chr1 88443497 88443672 + 2 NA Intergenic Intergenic -240560 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 565-60 chr17 60542132 60542598 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -16123 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 270-132 chr15 95645607 95645775 + 2 NA Intergenic L2|LINE|L2 212598 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 192-92 chr19 21464187 21464352 + 2 NA Intergenic Intergenic -19446 NR_037194 400680 Hs.710554 NR_037194 ENSG00000268658 LINC00664 - long intergenic non-protein coding RNA 664 ncRNA 312-142 chr14 50471537 50471703 + 2 NA intron (NM_198794, intron 9 of 31) intron (NM_198794, intron 9 of 31) 60949 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 341-345 chr3 135122881 135123071 + 2 NA intron (NM_004441, intron 4 of 15) intron (NM_004441, intron 4 of 15) 327716 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 243-291 chr3 97730183 97730354 + 2 NA intron (NM_001080448, intron 15 of 17) intron (NM_001080448, intron 15 of 17) -34253 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 322-345 chr3 118035003 118035319 + 2 NA Intergenic Intergenic -344236 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 230-165 chr2 24626438 24626642 + 2 NA intron (NM_001362950, intron 3 of 23) intron (NM_001362950, intron 3 of 23) 42063 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 270-407 chr8 123189145 123189402 + 2 NA intron (NM_001288587, intron 1 of 3) intron (NM_001288587, intron 1 of 3) 6608 NM_001321630 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 114-44 chr4 190446 190529 + 2 NA intron (NR_110527, intron 3 of 4) intron (NR_110527, intron 3 of 4) -22113 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 334-262 chr2 61181720 61181961 + 2 NA intron (NR_152210, intron 2 of 5) intron (NR_152210, intron 2 of 5) 4422 NR_152211 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 733-6 chr10 16002910 16003504 + 2 NA Intergenic L1MEc|LINE|L1 -142674 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 486-171 chr20 42185092 42185521 + 2 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -500177 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 192-183 chr7 3038626 3038804 + 2 NA intron (NM_001324281, intron 1 of 25) intron (NM_001324281, intron 1 of 25) 5152 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 323-596 chrX 73671426 73671624 + 2 NA intron (NM_001300884, intron 3 of 4) L1M2|LINE|L1 108377 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 422-276 chr7 31842609 31842925 + 2 NA intron (NM_001191059, intron 10 of 18) L1ME2|LINE|L1 155552 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 302-342 chr5 13550714 13550882 + 2 NA Intergenic Intergenic 393682 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 377-374 chr7 54799773 54800055 + 2 NA intron (NR_110040, intron 2 of 2) intron (NR_110040, intron 2 of 2) 40601 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 330-461 chr6 62651373 62651653 + 2 NA Intergenic MER61-int|LTR|ERV1 -365286 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 575-17 chr10 39310293 39310863 + 2 NA Intergenic ALR/Alpha|Satellite|centr 613982 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 367-38 chr1 238712812 238713015 + 2 NA Intergenic Intergenic -226896 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 525-228 chr6 127271962 127272429 + 2 NA intron (NM_001242852, intron 1 of 4) MIRb|SINE|MIR 5357 NM_001242845 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 336-460 chr5 105758269 105758548 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 658934 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 480-105 chr16 68056843 68057144 + 2 NA intron (NM_017803, intron 7 of 16) (AT)n|Simple_repeat|Simple_repeat -28377 NM_004555 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 393-250 chr4 122778177 122778414 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 45591 NM_152618 166379 Hs.400698 NM_152618 ENSG00000181004 BBS12 C4orf24 Bardet-Biedl syndrome 12 protein-coding 260-138 chr14 94732616 94732769 + 2 NA Intergenic Intergenic 37470 NM_173849 145258 Hs.440438 NM_173849 ENSG00000133937 GSC SAMS goosecoid homeobox protein-coding 380-388 chr8 52147620 52147930 + 2 NA intron (NM_001352876, intron 14 of 23) intron (NM_001352876, intron 14 of 23) -46587 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 243-120 chr14 43278222 43278374 + 2 NA Intergenic L1ME3F|LINE|L1 1228985 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 332-283 chr2 223253870 223254071 + 2 NA Intergenic L1ME3|LINE|L1 202040 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 185-186 chr6 120400241 120400334 + 2 NA Intergenic L1MA2|LINE|L1 385108 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 674-109 chr9 94466432 94466920 + 2 NA Intergenic L1MDa|LINE|L1 -88369 NR_121568 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 ncRNA 509-207 chr5 155157317 155157662 + 2 NA Intergenic Charlie14a|DNA|hAT-Charlie 143734 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 318-188 chr15 97222638 97222914 + 2 NA Intergenic Intergenic 299035 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 453-98 chr18 50949602 50949991 + 2 NA 3' UTR (NM_001168335, exon 14 of 14) 3' UTR (NM_001168335, exon 14 of 14) -18244 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 388-155 chr2 32192574 32192890 + 2 NA intron (NM_001330476, intron 3 of 10) intron (NM_001330476, intron 3 of 10) 26868 NM_001330479 55676 Hs.23248 NM_017964 ENSG00000152683 SLC30A6 MST103|MSTP103|ZNT6 solute carrier family 30 member 6 protein-coding 329-499 chr6 70406030 70406261 + 2 NA Intergenic Intergenic -7259 NM_001351600 57579 Hs.211700 NM_020819 ENSG00000082269 FAM135A KIAA1411 family with sequence similarity 135 member A protein-coding 282-102 chr12 97975208 97975374 + 2 NA Intergenic MIR|SINE|MIR 20157 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 375-456 chr9 99543535 99543887 + 2 NA Intergenic MIR|SINE|MIR -168454 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 541-115 chr2 79833887 79834275 + 2 NA intron (NM_001282598, intron 3 of 17) L1ME3Cz|LINE|L1 32502 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 279-133 chr17 33625004 33625156 + 2 NA intron (NM_001094, intron 1 of 9) MLT1F2|LTR|ERVL-MaLR -91320 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 382-329 chr5 73389144 73389426 + 2 NA Intergenic Intergenic 51379 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 402-70 chr12 128919583 128919940 + 2 NA intron (NM_001366886, intron 6 of 11) intron (NM_001366886, intron 6 of 11) 66283 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 254-232 chr22 22002537 22002743 + 2 NA intron (NR_135291, intron 4 of 6) LTR39|LTR|ERV1 -19853 NM_001349850 8940 Hs.436401 NM_003935 ENSG00000100038 TOP3B TOP3B1 DNA topoisomerase III beta protein-coding 293-299 chr4 59300904 59301109 + 2 NA Intergenic L1PA2|LINE|L1 287433 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 283-44 chr10 4393202 4393379 + 2 NA intron (NR_108054, intron 2 of 2) intron (NR_108054, intron 2 of 2) 9044 NR_108054 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 370-398 chr6 76874568 76874781 + 2 NA Intergenic L1MEc|LINE|L1 -281051 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 323-584 chr9 84554803 84555103 + 2 NA Intergenic Intergenic -113505 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 246-140 chr16 24121400 24121565 + 2 NA intron (NM_002738, intron 8 of 16) AluJr|SINE|Alu -81634 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 293-256 chr3 31357030 31357278 + 2 NA Intergenic LTR18A|LTR|ERVL -175771 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 306-71 chr11 20813337 20813615 + 2 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 143890 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 570-184 chr7 89585351 89585671 + 2 NA Intergenic LTR16D|LTR|ERVL -533889 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 300-110 chr14 47964631 47964805 + 2 NA Intergenic Intergenic -169704 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 165-133 chr8 115140261 115140410 + 2 NA Intergenic Intergenic 527678 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 323-181 chr16 63174376 63174601 + 2 NA Intergenic Intergenic -1138050 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 194-188 chr6 128684254 128684395 + 2 NA Intergenic L1MA10|LINE|L1 -163725 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 204-87 chr14 48341423 48341552 + 2 NA Intergenic L1M5|LINE|L1 -546473 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 857-55 chrX 82377492 82378203 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -1130443 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 354-435 chr7 70419859 70420086 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -712172 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 338-373 chr4 33076560 33076828 + 2 NA Intergenic Intergenic 725656 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 473-46 chr11 81225952 81226220 + 2 NA Intergenic (TTCT)n|Simple_repeat|Simple_repeat -463283 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 277-25 chr1 185613741 185613925 + 2 NA intron (NR_110793, intron 2 of 3) L1MA3|LINE|L1 14655 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 564-83 chr18 66788370 66788909 + 2 NA Intergenic MER67B|LTR|ERV1 -184549 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 224-95 chr14 86717562 86717756 + 2 NA Intergenic Intergenic -188119 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 287-263 chr3 123023884 123024151 + 2 NA intron (NR_046079, intron 1 of 22) intron (NR_046079, intron 1 of 22) 3746 NM_001031702 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 277-248 chr3 28034922 28035117 + 2 NA Intergenic Intergenic -200883 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 121-2 chr10 28128668 28128768 + 2 NA intron (NR_134518, intron 5 of 16) L2-1_AMi|LINE|L2 -55340 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 515-249 chr7 51831750 51832112 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -438675 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 370-379 chr5 145166378 145166573 + 2 NA Intergenic Intergenic 668867 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 205-69 chr12 82671625 82671734 + 2 NA Intergenic Intergenic -15227 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 451-5 chr1 28868609 28868966 + 2 NA 3' UTR (NM_000911, exon 3 of 3) 3' UTR (NM_000911, exon 3 of 3) -18304 NM_001166005 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 198-135 chr2 139360240 139360398 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 462995 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 350-249 chr2 149304561 149304890 + 2 NA Intergenic Intergenic -25260 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 263-209 chr2 107204207 107204353 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 145245 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 320-531 chr8 34719927 34720192 + 2 NA Intergenic Intergenic -63862 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 668-67 chr3 105143687 105144171 + 2 NA Intergenic Intergenic -222784 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 234-293 chr4 179189026 179189186 + 2 NA Intergenic Intergenic -1281170 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 332-87 chr11 44826631 44826851 + 2 NA intron (NM_130783, intron 2 of 9) intron (NM_130783, intron 2 of 9) 99779 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 294-211 chr2 58101594 58101870 + 2 NA intron (NM_001130483, intron 7 of 13) intron (NM_001130483, intron 7 of 13) 55020 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 476-267 chr8 95547665 95548003 + 2 NA intron (NR_038207, intron 2 of 2) MamGypLTR2b|LTR|Gypsy -278633 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 429-91 chr14 66452150 66452541 + 2 NA Intergenic Intergenic -34026 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 573-196 chr8 83675474 83675815 + 2 NA Intergenic L1M5|LINE|L1 271886 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 438-247 chr6 147074987 147075352 + 2 NA intron (NR_034115, intron 4 of 10) intron (NR_034115, intron 4 of 10) -83756 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 183-108 chr4 104646009 104646163 + 2 NA intron (NR_125926, intron 3 of 9) intron (NR_125926, intron 3 of 9) -151192 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 364-374 chr6 11681443 11681653 + 2 NA Intergenic Intergenic 97499 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 231-247 chr4 35352356 35352576 + 2 NA Intergenic Intergenic 891473 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 302-215 chr2 83675001 83675246 + 2 NA Intergenic L1MEc|LINE|L1 152309 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 235-273 chr5 16100974 16101167 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 78721 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 428-203 chr3 188987524 188987868 + 2 NA Intergenic L1MD1|LINE|L1 -40057 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 471-213 chr5 98199765 98200207 + 2 NA Intergenic Intergenic -38747 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 321-61 chr10 57383184 57383446 + 2 NA Intergenic Intergenic -78756 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 207-24 chr1 225557189 225557342 + 2 NA intron (NM_001008493, intron 2 of 14) intron (NM_001008493, intron 2 of 14) 95858 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 381-396 chr8 135984226 135984532 + 2 NA Intergenic Intergenic 526923 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 326-45 chr1 214816097 214816381 + 2 NA Intergenic Intergenic -189303 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 308-263 chr20 13058265 13058531 + 2 NA intron (NM_001349945, intron 3 of 12) intron (NM_001349945, intron 3 of 12) 49426 NM_001349945 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 238-130 chr16 64730909 64731062 + 2 NA Intergenic Intergenic 391078 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 309-32 chr1 223268120 223268412 + 2 NA intron (NM_017982, intron 4 of 8) intron (NM_017982, intron 4 of 8) 95910 NM_001037175 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 469-23 chr1 229103892 229104320 + 2 NA Intergenic AluSx1|SINE|Alu 70695 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 271-458 chr8 125974601 125974743 + 2 NA Intergenic Intergenic -23475 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 319-44 chr10 11099570 11099778 + 2 NA intron (NR_046108, intron 1 of 6) intron (NR_046108, intron 1 of 6) 5814 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 301-294 chr3 168000278 168000548 + 2 NA Intergenic Intergenic 95511 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 224-226 chr4 80697244 80697427 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -333373 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 335-237 chr2 37516328 37516655 + 2 NA Intergenic Intergenic 155708 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 123-32 chr3 123102279 123102361 + 2 NA intron (NM_006810, intron 3 of 16) intron (NM_006810, intron 3 of 16) 35295 NM_006810 10954 Hs.477352 NM_006810 ENSG00000065485 PDIA5 PDIR protein disulfide isomerase family A member 5 protein-coding 552-188 chr6 75539941 75540328 + 2 NA Intergenic LTR37-int|LTR|ERV1 -46334 NM_001300866 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 368-78 chr11 48781579 48781939 + 2 NA Intergenic ALR/Alpha|Satellite|centr -249841 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 423-68 chr13 84341149 84341459 + 2 NA intron (NR_046871, intron 3 of 6) AluJr|SINE|Alu 200702 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 277-304 chr5 4970429 4970618 + 2 NA Intergenic Intergenic -63836 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 336-194 chr16 27121203 27121418 + 2 NA Intergenic L1MB7|LINE|L1 54383 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 232-380 chr8 104001456 104001609 + 2 NA intron (NM_001348500, intron 15 of 20) intron (NM_001348500, intron 15 of 20) 182312 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 265-354 chr7 24262690 24262864 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -21413 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 435-12 chr1 83740975 83741267 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 119425 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 400-248 chr4 58726276 58726605 + 2 NA Intergenic Intergenic -190112 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 409-299 chr8 121069871 121070157 + 2 NA Intergenic LTR8B|LTR|ERV1 -257968 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 328-160 chr14 76028746 76028972 + 2 NA intron (NR_045664, intron 3 of 7) L1PA17|LINE|L1 43096 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 509-174 chr4 56555538 56556002 + 2 NA intron (NM_001256475, intron 3 of 8) L1MC2|LINE|L1 25164 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 575-102 chr20 40062265 40062654 + 2 NA Intergenic L1MEb|LINE|L1 57998 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 374-158 chr18 73482350 73482635 + 2 NA Intergenic L1M3|LINE|L1 157551 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 202-274 chr9 98339720 98339871 + 2 NA intron (NM_005458, intron 13 of 18) L2a|LINE|L2 -84146 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 291-393 chr6 144208095 144208343 + 2 NA Intergenic L1PREC2|LINE|L1 57702 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 246-45 chr10 57449998 57450163 + 2 NA Intergenic Intergenic -145521 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 224-68 chr12 112717759 112717910 + 2 NA intron (NM_001347952, intron 1 of 21) L1MC3|LINE|L1 -22658 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 271-147 chr15 58260885 58261141 + 2 NA Intergenic MER96|DNA|hAT-Tip100 122632 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 285-80 chr12 17713315 17713574 + 2 NA Intergenic L1MA4|LINE|L1 40145 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 390-177 chr2 47805711 47805968 + 2 NA intron (NM_001281493, intron 6 of 8) intron (NM_001281493, intron 6 of 8) 21884 NM_001281494 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 355-253 chr2 123647752 123648094 + 2 NA Intergenic Intergenic 377251 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 221-305 chr8 118920926 118921081 + 2 NA Intergenic Intergenic 30882 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 588-24 chr11 116155997 116156474 + 2 NA Intergenic L1ME1|LINE|L1 -396035 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 192-152 chr4 117073318 117073464 + 2 NA Intergenic Intergenic 12185 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 289-92 chr12 5898405 5898641 + 2 NA intron (NM_001278596, intron 3 of 25) L1ME3A|LINE|L1 46736 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 340-300 chr2 222190295 222190622 + 2 NA Intergenic Intergenic -107689 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 179-100 chr5 162096381 162096522 + 2 NA intron (NM_198904, intron 3 of 9) intron (NM_198904, intron 3 of 9) 28809 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 564-131 chr3 115566380 115566766 + 2 NA Intergenic Intergenic -56937 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 343-467 chr6 62801635 62801843 + 2 NA Intergenic L1PB1|LINE|L1 -515512 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 325-299 chr20 4291430 4291703 + 2 NA Intergenic L1ME4b|LINE|L1 -42279 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 256-280 chr3 195221134 195221310 + 2 NA intron (NM_152531, intron 2 of 3) L1MC3|LINE|L1 26698 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 517-195 chr4 73455684 73456028 + 2 NA 3' UTR (NM_001134, exon 15 of 15) 3' UTR (NM_001134, exon 15 of 15) 19635 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 243-15 chr1 102017607 102017845 + 2 NA Intergenic Intergenic -20492 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 198-24 chr10 47118964 47119120 + 2 NA Intergenic L1ME2|LINE|L1 -181155 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 634-122 chr5 7534321 7534886 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 138465 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 209-257 chr5 111106305 111106459 + 2 NA intron (NM_139281, intron 11 of 22) intron (NM_139281, intron 11 of 22) 14210 NM_139281 134430 Hs.533237 NM_139281 ENSG00000134987 WDR36 GLC1G|TA-WDRP|TAWDRP|UTP21 WD repeat domain 36 protein-coding 149-82 chr5 63611706 63611847 + 2 NA Intergenic Intergenic 350516 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 341-442 chr5 114476605 114476933 + 2 NA intron (NR_130785, intron 6 of 12) intron (NR_130785, intron 6 of 12) 43258 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 326-480 chr7 5103727 5103935 + 2 NA Intergenic L2b|LINE|L2 31771 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 328-26 chr1 183194514 183194815 + 2 NA intron (NM_005562, intron 1 of 22) intron (NM_005562, intron 1 of 22) 8400 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 178-83 chr22 24111924 24112021 + 2 NA intron (NM_012295, intron 26 of 36) L1MCc|LINE|L1 -69515 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 241-204 chr2 153931155 153931349 + 2 NA intron (NM_052917, intron 2 of 12) L1PA15|LINE|L1 -13142 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 255-447 chr8 138588390 138588523 + 2 NA 3' UTR (NM_152888, exon 65 of 65) 3' UTR (NM_152888, exon 65 of 65) -90726 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 406-297 chr8 89185075 89185412 + 2 NA Intergenic Intergenic 572468 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 377-234 chr2 206833013 206833263 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -49830 NR_036077 100422993 NR_036077 ENSG00000283469 MIR3130-1 MIR3130-3|mir-3130-1 microRNA 3130-1 ncRNA 378-209 chr2 5875501 5875732 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -57071 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 296-32 chr10 20430109 20430311 + 2 NA Intergenic L1MD3|LINE|L1 -121760 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 260-55 chr10 65970501 65970690 + 2 NA intron (NM_001127384, intron 16 of 17) L1PA16|LINE|L1 399170 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 359-115 chr12 37870252 37870436 + 2 NA Intergenic ALR/Alpha|Satellite|centr -446430 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 255-406 chr8 14143253 14143406 + 2 NA intron (NM_001322880, intron 4 of 6) L1MD1|LINE|L1 513639 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 391-357 chr8 107947729 107947939 + 2 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 134105 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 321-518 chr7 18261692 18261894 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -28299 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 389-163 chr2 35179182 35179446 + 2 NA Intergenic L1MEf|LINE|L1 -292091 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 394-27 chr1 232883157 232883387 + 2 NA Intergenic L2a|LINE|L2 -67339 NR_138026 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 546-178 chr4 105924650 105925029 + 2 NA intron (NM_001184690, intron 3 of 12) intron (NM_001184690, intron 3 of 12) 29368 NM_001184692 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 282-504 chrX 120338251 120338448 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -23740 NM_012069 23439 Hs.292599 NM_012069 ENSG00000101892 ATP1B4 - ATPase Na+/K+ transporting family member beta 4 protein-coding 236-85 chr12 42641239 42641383 + 2 NA intron (NR_110042, intron 3 of 5) intron (NR_110042, intron 3 of 5) 5187 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LINC02402 - long intergenic non-protein coding RNA 2402 ncRNA 373-51 chr10 51362999 51363287 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 63570 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 368-167 chr16 5552745 5553052 + 2 NA Intergenic Intergenic 63352 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 312-493 chr7 92911372 92911585 + 2 NA intron (NR_110086, intron 4 of 4) Tigger2b_Pri|DNA|TcMar-Tigger -74851 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 283-38 chr1 225302242 225302409 + 2 NA intron (NM_001367479, intron 56 of 85) intron (NM_001367479, intron 56 of 85) 125713 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 298-303 chr3 102563685 102563895 + 2 NA Intergenic L1M3de|LINE|L1 128775 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 293-283 chr3 162371925 162372171 + 2 NA Intergenic Intergenic 875240 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 210-95 chr16 67140743 67140860 + 2 NA intron (NM_001320542, intron 11 of 16) intron (NM_001320542, intron 11 of 16) 10197 NM_033309 84752 Hs.744158 NM_033309 ENSG00000237172 B3GNT9 - UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9 protein-coding 332-203 chr17 70533551 70533754 + 2 NA Intergenic Intergenic 364117 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 220-203 chr20 40694072 40694263 + 2 NA Intergenic MIRb|SINE|MIR -4931 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 362-280 chr3 111154466 111154652 + 2 NA intron (NM_001243288, intron 7 of 8) L1ME1|LINE|L1 82743 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 290-459 chr8 114269850 114270069 + 2 NA Intergenic Intergenic -833020 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 305-365 chr3 185201501 185201694 + 2 NA intron (NM_001966, intron 6 of 6) intron (NM_001966, intron 6 of 6) 38696 NR_038990 339926 Hs.567848 NR_038990 ENSG00000223358 EHHADH-AS1 - EHHADH antisense RNA 1 ncRNA 312-237 chr2 68610746 68610942 + 2 NA Intergenic MER34C2|LTR|ERV1 -32744 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 345-414 chr5 41325287 41325476 + 2 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -63912 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 304 chr1 15164039 15164275 + 2 NA TTS (NM_001278502) TTS (NM_001278502) 7467 NM_001278502 727684 Hs.667584 NM_001278501 C1orf195 - chromosome 1 open reading frame 195 protein-coding 501-4 chr1 70170080 70170451 + 2 NA intron (NM_017768, intron 9 of 14) L1M4b|LINE|L1 35314 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 363-312 chr4 30570330 30570629 + 2 NA Intergenic L1MA7|LINE|L1 -149890 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 460-34 chr10 43059508 43059928 + 2 NA Intergenic AluJo|SINE|Alu -17309 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 238-86 chr12 95958090 95958276 + 2 NA intron (NM_152435, intron 4 of 8) L1MA8|LINE|L1 14852 NM_152435 144193 Hs.424907 NM_152435 ENSG00000139344 AMDHD1 HMFT1272 amidohydrolase domain containing 1 protein-coding 241-126 chr15 58329317 58329476 + 2 NA Intergenic L1MA5|LINE|L1 -102595 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 524-195 chr5 27477536 27477936 + 2 NA non-coding (NR_038848, exon 3 of 5) non-coding (NR_038848, exon 3 of 5) 5444 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 399-198 chr22 49613358 49613604 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 44038 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 355-413 chr5 123485031 123485360 + 2 NA Intergenic Intergenic -26904 NM_001031812 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 413-19 chr1 165025291 165025677 + 2 NA Intergenic Intergenic -250843 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 504-47 chr12 1922690 1923116 + 2 NA Intergenic L2a|LINE|L2 -4251 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 626-138 chr8 87372463 87372997 + 2 NA intron (NM_173538, intron 10 of 10) intron (NM_173538, intron 10 of 10) 501285 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 289-471 chr8 121008196 121008406 + 2 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -196255 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 258-36 chr1 238416422 238416591 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 69511 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 353-386 chr4 109215523 109215869 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 86962 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 299-16 chr1 90645727 90645930 + 2 NA Intergenic L1ME4a|LINE|L1 -11922 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 215-235 chr4 101511170 101511336 + 2 NA Intergenic Intergenic 163476 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 254-146 chr16 87141240 87141452 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -70769 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 380-193 chr2 127237310 127237561 + 2 NA Intergenic L1MCa|LINE|L1 -17136 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 1417-3 chr2 175998907 176000016 + 2 NA intron (NR_130941, intron 1 of 14) MIR|SINE|MIR 2806 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 291-305 chr3 191252201 191252372 + 2 NA intron (NM_198184, intron 4 of 4) AluSc|SINE|Alu -17681 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 384-28 chr1 239220120 239220368 + 2 NA Intergenic Intergenic -166324 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 246-417 chr8 125992057 125992199 + 2 NA Intergenic HERVP71A-int|LTR|ERV1 -40931 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 396-209 chr3 13700165 13700386 + 2 NA intron (NR_027103, intron 2 of 5) intron (NR_027103, intron 2 of 5) 49554 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 276-265 chr20 45734445 45734656 + 2 NA Intergenic L1MA7|LINE|L1 12203 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 437-225 chr5 80524389 80524658 + 2 NA intron (NM_205548, intron 5 of 5) intron (NM_205548, intron 5 of 5) 36423 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 353-365 chr4 37199621 37199906 + 2 NA Intergenic L1PA15|LINE|L1 42228 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 181-121 chr5 41229677 41229813 + 2 NA intron (NM_001115131, intron 1 of 17) L1MA8|LINE|L1 -16213 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 451-74 chr14 82329455 82329747 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -313031 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 113-33 chr20 56042826 56042902 + 2 NA Intergenic Intergenic -37345 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 332-313 chr22 35675638 35675878 + 2 NA Intergenic AluSx3|SINE|Alu 27312 NM_030641 80830 Hs.257352 NM_030641 ENSG00000221963 APOL6 APOL-VI|APOLVI apolipoprotein L6 protein-coding 903-22 chr22 34034306 34035040 + 2 NA Intergenic Intergenic -111785 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 248-247 chr3 96123172 96123325 + 2 NA Intergenic L1MA10|LINE|L1 -236716 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 587-44 chr14 48676727 48677129 + 2 NA Intergenic Intergenic -881914 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 308-95 chr12 8973464 8973639 + 2 NA intron (NR_137427, intron 1 of 2) MLT1A1|LTR|ERVL-MaLR -15995 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 364-188 chr19 34816793 34817060 + 2 NA non-coding (NR_033982, exon 6 of 6) non-coding (NR_033982, exon 6 of 6) 15943 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 322-25 chr1 121499626 121499814 + 2 NA Intergenic L1M3f|LINE|L1 -19392 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 276-19 chr1 159810378 159810562 + 2 NA intron (NM_001004310, intron 6 of 9) intron (NM_001004310, intron 6 of 9) 8110 NM_001004310 343413 Hs.196955 NM_001004310 ENSG00000181036 FCRL6 FcRH6 Fc receptor like 6 protein-coding 788-15 chr14 26770945 26771629 + 2 NA intron (NR_147061, intron 3 of 6) intron (NR_147061, intron 3 of 6) -38061 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 393-171 chr2 138147881 138148228 + 2 NA Intergenic AluJr|SINE|Alu 46170 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 497-47 chr11 103392360 103392751 + 2 NA intron (NM_001377, intron 83 of 88) L1PA4|LINE|L1 283129 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 422-295 chr8 70868623 70868994 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 199469 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 483-145 chr21 14798665 14798989 + 2 NA Intergenic L1MA2|LINE|L1 119841 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 485-75 chr14 48181466 48181827 + 2 NA Intergenic L2a|LINE|L2 -386632 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 434-113 chr17 74547805 74548090 + 2 NA Intergenic Intergenic -1832 NM_006678 10871 Hs.2605 NM_006678 ENSG00000167850 CD300C CLM-6|CMRF-35|CMRF-35A|CMRF35|CMRF35-A1|CMRF35A|CMRF35A1|IGSF16|LIR CD300c molecule protein-coding 497-229 chr5 64525192 64525583 + 2 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) 19372 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 304-250 chr2 58356693 58356948 + 2 NA Intergenic Intergenic 80943 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 336-486 chr6 54545316 54545504 + 2 NA Intergenic L1PB1|LINE|L1 236969 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 374-80 chr12 128521506 128521768 + 2 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 227545 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 499-291 chrX 84437183 84437503 + 2 NA intron (NM_001177478, intron 4 of 9) FLAM_C|SINE|Alu 65110 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 287-271 chr3 183047871 183048053 + 2 NA intron (NR_120639, intron 7 of 15) Tigger3c|DNA|TcMar-Tigger 51281 NR_120640 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 395-271 chr5 46281766 46282004 + 2 NA Intergenic ALR/Alpha|Satellite|centr -585505 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 145-91 chr9 80259088 80259178 + 2 NA Intergenic L1MA9|LINE|L1 284110 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 403-57 chr11 81946269 81946664 + 2 NA intron (NR_120571, intron 6 of 7) (TTG)n|Simple_repeat|Simple_repeat -55630 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 453-189 chr4 133652258 133652574 + 2 NA Intergenic Intergenic 503122 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 291-100 chr12 55515860 55516071 + 2 NA Intergenic L1M1|LINE|L1 23587 NM_001005519 403284 Hs.626886 NM_001005519 ENSG00000205327 OR6C68 - olfactory receptor family 6 subfamily C member 68 protein-coding 348-560 chr9 84598401 84598721 + 2 NA Intergenic Intergenic -69897 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 284-23 chr1 214415848 214416055 + 2 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 134792 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 307-72 chr10 107874549 107874740 + 2 NA intron (NR_125760, intron 4 of 4) MER34B-int|LTR|ERV1 194649 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 188-205 chr8 103962073 103962204 + 2 NA intron (NR_145711, intron 12 of 21) intron (NR_145711, intron 12 of 21) 142918 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 395-323 chr7 136233139 136233463 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -255942 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 164-78 chr3 81149470 81149588 + 2 NA Intergenic Intergenic 155661 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 421-222 chr4 126100587 126100867 + 2 NA Intergenic Intergenic 593468 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 311-197 chr17 49128438 49128674 + 2 NA Intergenic LTR19-int|LTR|ERV1 -3904 NM_001159388 124872 Hs.374679 NM_153446 ENSG00000167080 B4GALNT2 B4GALT|GALGT2 beta-1,4-N-acetyl-galactosaminyltransferase 2 protein-coding 269-258 chr3 173526813 173526974 + 2 NA intron (NM_014932, intron 2 of 6) L1MA3|LINE|L1 -57541 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 207-80 chr14 49965309 49965435 + 2 NA Intergenic L1MB4|LINE|L1 -1027 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 199-4 chr1 57047091 57047245 + 2 NA intron (NM_001353986, intron 9 of 14) MIRb|SINE|MIR -81028 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 690-29 chr12 127824314 127824894 + 2 NA Intergenic Intergenic -57013 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 235-207 chr21 18863439 18863583 + 2 NA Intergenic Intergenic -103699 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 226-223 chr3 63807936 63808089 + 2 NA Intergenic Intergenic -11287 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 495-252 chr8 82203254 82203660 + 2 NA Intergenic Intergenic -361171 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 435-67 chr12 107578835 107579192 + 2 NA intron (NM_001018072, intron 3 of 16) L2a|LINE|L2 -1861 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 501-152 chr3 2628732 2629171 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -263264 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 213-92 chr14 78863165 78863304 + 2 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -336748 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 269-267 chr4 33321212 33321393 + 2 NA Intergenic Intergenic 718591 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 306-311 chr3 71412363 71412543 + 2 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) -107682 NM_001244812 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 232-78 chr12 80499610 80499791 + 2 NA intron (NM_001145026, intron 14 of 44) intron (NM_001145026, intron 14 of 44) 55465 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 693-35 chr15 27282477 27282925 + 2 NA intron (NM_001270873, intron 3 of 5) L1MD2|LINE|L1 -121382 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 225-270 chr5 23784761 23784939 + 2 NA Intergenic Intergenic -166498 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 321-430 chr4 97127322 97127515 + 2 NA Intergenic L1PA15|LINE|L1 -239508 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 572-135 chr5 30206930 30207413 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 326611 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 499-15 chr1 215191926 215192401 + 2 NA intron (NM_001017424, intron 5 of 6) intron (NM_001017424, intron 5 of 6) 109426 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 336-94 chr11 50614047 50614375 + 2 NA Intergenic ALR/Alpha|Satellite|centr 205064 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 218-49 chr11 40607492 40607706 + 2 NA intron (NM_020929, intron 2 of 4) LTR1A1|LTR|ERV1 -314469 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 341-283 chr2 238993523 238993831 + 2 NA Intergenic L1MC5a|LINE|L1 -67408 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 419-219 chr5 5680311 5680656 + 2 NA Intergenic Intergenic 257806 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 658-30 chr11 96469085 96469695 + 2 NA intron (NR_047481, intron 1 of 4) L2b|LINE|L2 37487 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 249-29 chr1 208425864 208426106 + 2 NA Intergenic Intergenic -181601 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 493-117 chr18 9461230 9461670 + 2 NA Intergenic HAL1|LINE|L1 -14063 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 305-348 chr3 84062983 84063218 + 2 NA Intergenic L1MC4|LINE|L1 806475 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 438-112 chr2 34991473 34991740 + 2 NA Intergenic L2a|LINE|L2 314049 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 569-50 chr12 115508240 115508739 + 2 NA Intergenic MIR|SINE|MIR 640165 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 431-272 chr7 65404106 65404411 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 30403 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 371-174 chr2 101358308 101358581 + 2 NA intron (NM_153836, intron 2 of 3) intron (NM_153836, intron 2 of 3) 29059 NM_153836 200407 Hs.732289 NM_153836 ENSG00000175874 CREG2 - cellular repressor of E1A stimulated genes 2 protein-coding 225-248 chr4 88517806 88517992 + 2 NA Intergenic L1MB8|LINE|L1 5877 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 379-235 chr4 65069542 65069789 + 2 NA Intergenic L2c|LINE|L2 -65165 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 330-558 chr9 103568532 103568798 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -243632 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 366-106 chr12 73545609 73545839 + 2 NA Intergenic Intergenic 386534 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 319-231 chr2 17578517 17578781 + 2 NA intron (NM_001366806, intron 1 of 3) intron (NM_001366806, intron 1 of 3) 37953 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 311-429 chr6 1150010 1150294 + 2 NA Intergenic Intergenic -48820 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 335-506 chr7 53659574 53659805 + 2 NA intron (NR_038371, intron 5 of 5) intron (NR_038371, intron 5 of 5) 152242 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 259-250 chr3 65294334 65294512 + 2 NA Intergenic Intergenic -599393 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 388-183 chr20 31192176 31192402 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -65375 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 371-335 chr6 50909550 50909828 + 2 NA Intergenic L1ME1|LINE|L1 90818 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 521-254 chr8 69010470 69010818 + 2 NA intron (NR_039986, intron 2 of 4) HAL1|LINE|L1 93546 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 526-23 chr10 64402055 64402526 + 2 NA Intergenic MamGypLTR2b|LTR|Gypsy -423238 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 392-320 chr8 82088769 82088992 + 2 NA Intergenic Intergenic -246594 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 334-454 chr6 39071824 39072046 + 2 NA intron (NR_136563, intron 5 of 13) L1ME3C|LINE|L1 -2379 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 307-144 chr14 62482105 62482275 + 2 NA Intergenic Intergenic -342217 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 571-128 chr5 16038523 16038976 + 2 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 103567 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 314-124 chr12 34546194 34546382 + 2 NA Intergenic ALR/Alpha|Satellite|centr 523792 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 396-59 chr10 108033199 108033413 + 2 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 35987 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 314-621 chrX 51368924 51369164 + 2 NA Intergenic L1MA1|LINE|L1 36222 NM_001304963 170685 Hs.375178 NM_153183 ENSG00000122824 NUDT10 APS2|DIPP3-alpha|DIPP3a nudix hydrolase 10 protein-coding 160-35 chr18 28289553 28289648 + 2 NA Intergenic L1MEf|LINE|L1 -112470 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 395-175 chr2 122818546 122818879 + 2 NA Intergenic MIR|SINE|MIR 254769 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 530-217 chr6 77398793 77399219 + 2 NA Intergenic L1MCb|LINE|L1 65016 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 323-495 chr7 46002632 46002867 + 2 NA Intergenic L1M3|LINE|L1 -81477 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 448-20 chr1 192165565 192165986 + 2 NA intron (NM_130782, intron 3 of 4) intron (NM_130782, intron 3 of 4) 7313 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 263-138 chr16 63789676 63789849 + 2 NA Intergenic MER66C|LTR|ERV1 1332301 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 239-151 chr18 72882543 72882724 + 2 NA Intergenic HAL1|LINE|L1 13593 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 292-352 chr5 64238095 64238360 + 2 NA intron (NM_001113561, intron 5 of 7) L1MB1|LINE|L1 72384 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 522-26 chr10 81572404 81572761 + 2 NA Intergenic L1PA15|LINE|L1 -302612 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 212-180 chr2 205854375 205854543 + 2 NA Intergenic Intergenic 171958 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 304-196 chr17 66058153 66058391 + 2 NA intron (NM_001353129, intron 11 of 26) intron (NM_001353129, intron 11 of 26) 133620 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 272-443 chr8 58310798 58311041 + 2 NA Intergenic L2c|LINE|L2 -38818 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 435-32 chr10 60715940 60716234 + 2 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) 17441 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 321-164 chr14 43697021 43697282 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 810132 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 502-89 chr14 71859385 71859765 + 2 NA Intergenic L1PB1|LINE|L1 -72596 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 286-319 chr4 85668331 85668502 + 2 NA intron (NM_001025616, intron 2 of 9) L2a|LINE|L2 -54052 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 464-274 chrX 99295875 99296300 + 2 NA Intergenic Intergenic 1114186 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 284-62 chr11 3348595 3348771 + 2 NA Intergenic L1MA8|LINE|L1 30463 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 269-138 chr15 80132251 80132399 + 2 NA intron (NM_001242917, intron 6 of 6) Tigger2|DNA|TcMar-Tigger -20674 NM_000137 2184 Hs.73875 NM_000137 ENSG00000103876 FAH - fumarylacetoacetate hydrolase protein-coding 268-245 chr3 85106205 85106399 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -44038 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 238-309 chr5 169020047 169020198 + 2 NA intron (NR_109897, intron 1 of 4) MER58A|DNA|hAT-Charlie 6895 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 328-566 chr8 84288528 84288849 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 104022 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 218-267 chr5 66506630 66506792 + 2 NA TTS (NR_105001) TTS (NR_105001) 4893 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 213-65 chr12 7811252 7811438 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 21943 NM_024865 79923 Hs.635882 NM_024865 ENSG00000111704 NANOG - Nanog homeobox protein-coding 435-109 chr18 64509179 64509429 + 2 NA Intergenic Intergenic -249249 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 330-403 chr5 8506501 8506698 + 2 NA Intergenic AluSp|SINE|Alu 45674 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 265-15 chr1 113584106 113584304 + 2 NA intron (NM_001142782, intron 3 of 20) intron (NM_001142782, intron 3 of 20) 174950 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 417-112 chr18 1725575 1725899 + 2 NA Intergenic Intergenic -366108 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 223-20 chr1 188306770 188306900 + 2 NA Intergenic L1M4|LINE|L1 863207 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 283-473 chr9 137331818 137332014 + 2 NA intron (NM_017820, intron 17 of 21) AluSz|SINE|Alu -29645 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 174-36 chr13 64552379 64552506 + 2 NA Intergenic Intergenic -476431 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 233-390 chr8 136221577 136221721 + 2 NA Intergenic L1PA16|LINE|L1 -309149 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 259-240 chr22 20644408 20644657 + 2 NA Intergenic L3|LINE|CR1 -45023 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 574-12 chr10 32519796 32520225 + 2 NA intron (NR_109826, intron 11 of 16) L1MA2|LINE|L1 73870 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 290-375 chr5 165026707 165026928 + 2 NA Intergenic L1PA16|LINE|L1 556538 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 265-163 chr19 28156218 28156467 + 2 NA Intergenic Intergenic -362402 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 236-114 chr14 57278145 57278314 + 2 NA intron (NM_018229, intron 2 of 7) LTR33B|LTR|ERVL 9258 NR_026895 55745 Hs.597349 NM_018229 ENSG00000053770 AP5M1 C14orf108|MUDENG|Mu5|MuD adaptor related protein complex 5 subunit mu 1 protein-coding 224-63 chr12 41497216 41497398 + 2 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 59568 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 356-161 chr15 43200446 43200650 + 2 NA intron (NM_001114134, intron 12 of 12) L1ME5|LINE|L1 15145 NR_027514 23582 Hs.36794 NM_012142 ENSG00000166946 CCNDBP1 DIP1|GCIP|HHM cyclin D1 binding protein 1 protein-coding 518-264 chr6 162989177 162989578 + 2 NA intron (NM_001080379, intron 2 of 4) MER2|DNA|TcMar-Tigger 64784 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 322-365 chr4 36950441 36950691 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -51213 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 996 chr1 78696735 78697470 + 2 NA Intergenic L1PA12|LINE|L1 47271 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 215-246 chr5 13631600 13631760 + 2 NA Intergenic L1PA15|LINE|L1 312800 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 351-124 chr14 59139023 59139217 + 2 NA Intergenic Intergenic -49547 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 537-188 chr5 18166452 18166830 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 359367 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 368-306 chr3 147859360 147859583 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -218688 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 214-282 chr6 101500261 101500423 + 2 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 101357 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 428-256 chr6 68120688 68121067 + 2 NA Intergenic Intergenic 65526 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 370-186 chr17 79353087 79353359 + 2 NA intron (NM_001082575, intron 2 of 14) L1M3|LINE|L1 162925 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 379-142 chr2 3749347 3749683 + 2 NA intron (NM_001287444, intron 4 of 10) intron (NM_001287444, intron 4 of 10) 42673 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 493-24 chr10 14046116 14046424 + 2 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) -28014 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 289-345 chr4 91275814 91276030 + 2 NA intron (NM_001145065, intron 10 of 10) L1MA4A|LINE|L1 1001380 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 436-319 chr8 133618025 133618386 + 2 NA Intergenic Intergenic -46318 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 1109-2 chr1 234338834 234339695 + 2 NA Intergenic L1MB4|LINE|L1 32797 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 147-19 chr14 43114367 43114487 + 2 NA Intergenic L1M4|LINE|L1 1392856 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 567-50 chr14 18491545 18491914 + 2 NA Intergenic CER|Satellite|Satellite -109388 NM_001013354 440153 Hs.534880 NM_001013354 ENSG00000257115 OR11H12 - olfactory receptor family 11 subfamily H member 12 protein-coding 224-175 chr20 39562143 39562298 + 2 NA Intergenic L2a|LINE|L2 -337472 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 500-300 chr8 102113138 102113515 + 2 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 11008 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 412-172 chr2 149731662 149731973 + 2 NA intron (NR_110240, intron 1 of 2) MLT1C|LTR|ERVL-MaLR 127374 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 313-250 chr2 52893064 52893235 + 2 NA Intergenic L1M2|LINE|L1 -190534 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 443-226 chr4 108013715 108014122 + 2 NA intron (NM_005327, intron 2 of 7) intron (NM_005327, intron 2 of 7) 9254 NM_001331027 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 210-144 chr2 168506176 168506380 + 2 NA intron (NM_001256126, intron 1 of 10) intron (NM_001256126, intron 1 of 10) 50006 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 343-289 chr2 213920073 213920387 + 2 NA intron (NR_047660, intron 10 of 14) L1PA13|LINE|L1 162163 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 211-226 chr5 26245213 26245372 + 2 NA Intergenic Intergenic 793294 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 402-25 chr10 5934823 5935076 + 2 NA intron (NM_178150, intron 19 of 20) AluJb|SINE|Alu 33979 NM_001351096 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 262-59 chr10 85203015 85203235 + 2 NA Intergenic Intergenic -4187 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 354-366 chr5 27336359 27336646 + 2 NA Intergenic Intergenic -135790 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 289-106 chr12 58320038 58320242 + 2 NA Intergenic Intergenic 232248 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 820-55 chr7 4370030 4370605 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie -235480 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 341-204 chr18 6184844 6185070 + 2 NA intron (NM_001365769, intron 12 of 16) intron (NM_001365769, intron 12 of 16) -71787 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 195-148 chr3 85166920 85167070 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -104731 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 300-411 chr7 825366 825629 + 2 NA intron (NM_001367651, intron 2 of 21) intron (NM_001367651, intron 2 of 21) -6979 NM_001130965 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 288-180 chr2 41050466 41050696 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -538146 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 304-172 chr16 3371264 3371497 + 2 NA 3' UTR (NM_001190476, exon 1 of 1) 3' UTR (NM_001190476, exon 1 of 1) 1288 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 141-48 chr21 28410247 28410366 + 2 NA Intergenic Intergenic -129012 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 342-199 chr18 3676575 3676912 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 73006 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 342-213 chr19 48051652 48051834 + 2 NA intron (NM_001159322, intron 16 of 16) THE1D|LTR|ERVL-MaLR -7664 NM_019855 56344 Hs.117694 NM_016367 ENSG00000105507 CABP5 CABP3 calcium binding protein 5 protein-coding 373-66 chr10 108893217 108893491 + 2 NA Intergenic HERVL-int|LTR|ERVL -824061 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 311-247 chr2 50151554 50151797 + 2 NA intron (NM_001330093, intron 18 of 22) L1MB7|LINE|L1 -177472 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 311-18 chr1 94828884 94829069 + 2 NA intron (NM_001258340, intron 5 of 14) AluSc|SINE|Alu 4483 NM_001350223 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 365-189 chr2 51234900 51235253 + 2 NA intron (NR_135237, intron 2 of 10) THE1C|LTR|ERVL-MaLR 202475 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 331-384 chr4 76077627 76077823 + 2 NA intron (NM_001130017, intron 2 of 9) L1MB7|LINE|L1 3030 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 553-133 chr2 164100700 164101063 + 2 NA Intergenic Intergenic -364873 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 236-214 chr3 30447196 30447357 + 2 NA Intergenic Intergenic -71592 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 261-59 chr11 20228678 20228925 + 2 NA Intergenic MIRc|SINE|MIR -68326 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 114-63 chr8 84350821 84350893 + 2 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -64627 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 317-345 chr4 48218721 48218932 + 2 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) 51012 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 337-448 chr5 52457934 52458181 + 2 NA Intergenic Intergenic -329859 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 351-154 chr16 4793418 4793715 + 2 NA intron (NM_001253790, intron 1 of 4) intron (NM_001253790, intron 1 of 4) -1803 NM_001253794 440335 Hs.390599 NM_001253790 ENSG00000267795 SMIM22 CASIMO1 small integral membrane protein 22 protein-coding 260-440 chr8 107021140 107021348 + 2 NA Intergenic L1P4e|LINE|L1 -251000 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 753-49 chr5 30888941 30889475 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -304478 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 251-268 chr4 55811814 55811978 + 2 NA Intergenic Intergenic -8107 NM_001351574 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 543-156 chr21 15045354 15045731 + 2 NA intron (NM_003489, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 19458 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 707-98 chr7 67721348 67721903 + 2 NA Intergenic LTR8|LTR|ERV1 -298628 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 257-367 chr6 141353167 141353342 + 2 NA Intergenic Intergenic 669440 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 403-111 chr15 26070852 26071190 + 2 NA Intergenic Intergenic -44792 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 365-57 chr10 92736852 92737155 + 2 NA Intergenic AluJo|SINE|Alu 47048 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 325-68 chr10 67346632 67346867 + 2 NA intron (NM_001127384, intron 5 of 17) LTR88b|LTR|Gypsy? 56661 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 209-262 chr5 146560600 146560757 + 2 NA Intergenic Intergenic -44565 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 282-489 chr9 80861686 80861928 + 2 NA Intergenic L1MEc|LINE|L1 827728 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 471-189 chr4 46460962 46461301 + 2 NA Intergenic L1PREC2|LINE|L1 -71003 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 280-428 chr8 134440842 134441039 + 2 NA Intergenic L1MEb|LINE|L1 -157131 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 358-468 chr8 60648439 60648732 + 2 NA Intergenic Intergenic -30155 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 277-71 chr11 35616410 35616604 + 2 NA Intergenic L2c|LINE|L2 -1953 NM_014344 24147 Hs.39384 NM_014344 ENSG00000179431 FJX1 - four-jointed box kinase 1 protein-coding 414-246 chr4 121106226 121106478 + 2 NA Intergenic Intergenic -33817 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 137-80 chr6 137394106 137394206 + 2 NA Intergenic Intergenic 100238 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 283-302 chr3 158535886 158536109 + 2 NA intron (NM_001271838, intron 7 of 9) L1MC5a|LINE|L1 9289 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 266-309 chr4 171102590 171102757 + 2 NA Intergenic L1MB2|LINE|L1 62071 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 787-30 chr3 95170423 95171039 + 2 NA Intergenic Intergenic 232468 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 335-13 chr1 83082925 83083247 + 2 NA intron (NR_147074, intron 6 of 10) intron (NR_147074, intron 6 of 10) -96878 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 173 chr1 42369311 42369441 + 2 NA Intergenic Intergenic -11416 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 383-126 chr15 36703774 36704062 + 2 NA intron (NM_032499, intron 9 of 11) L3b|LINE|CR1 109041 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 271-218 chr2 205136208 205136427 + 2 NA intron (NM_152526, intron 10 of 21) intron (NM_152526, intron 10 of 21) -546183 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 257-379 chr7 33819458 33819639 + 2 NA Intergenic L1ME4a|LINE|L1 -85367 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 213-165 chr21 27712105 27712232 + 2 NA Intergenic L1PA3|LINE|L1 -10211 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 280-347 chr6 46452456 46452659 + 2 NA intron (NM_001251973, intron 2 of 4) MLT1I|LTR|ERVL-MaLR 38766 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 276-238 chr2 123598890 123599104 + 2 NA Intergenic Intergenic 426177 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 359-452 chr7 51861238 51861531 + 2 NA Intergenic Intergenic -468128 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 294-172 chr18 12694900 12695066 + 2 NA intron (NM_001271989, intron 5 of 10) AluY|SINE|Alu 7740 NM_024899 79959 Hs.236940 NM_024899 ENSG00000101624 CEP76 C18orf9|HsT1705 centrosomal protein 76 protein-coding 230-290 chr5 27538497 27538677 + 2 NA Intergenic L1PA16|LINE|L1 66295 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 290-477 chr9 25503939 25504101 + 2 NA Intergenic Intergenic 174838 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 497-222 chr5 27261816 27262194 + 2 NA Intergenic Intergenic -210287 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 287-52 chr10 56062468 56062636 + 2 NA Intergenic L1PA16|LINE|L1 298707 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 194-164 chr5 44982022 44982172 + 2 NA Intergenic Intergenic 173150 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 410-151 chr2 163216796 163217092 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -378177 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 271-99 chr12 46825550 46825697 + 2 NA intron (NM_018018, intron 1 of 16) intron (NM_018018, intron 1 of 16) 374 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 309-588 chrX 116885931 116886184 + 2 NA Intergenic Intergenic -68197 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 264-153 chr16 20722191 20722421 + 2 NA Intergenic Intergenic 19512 NM_017736 55623 Hs.700004 NM_017736 ENSG00000066654 THUMPD1 Tan1 THUMP domain containing 1 protein-coding 340-265 chr2 80588530 80588793 + 2 NA intron (NM_001282599, intron 8 of 11) intron (NM_001282599, intron 8 of 11) 275282 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 240-72 chr11 17359120 17359307 + 2 NA intron (NM_001202439, intron 2 of 4) L1MC3|LINE|L1 7413 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 324-560 chr9 26438703 26438974 + 2 NA Intergenic Intergenic 372163 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 328-249 chr2 35843964 35844186 + 2 NA Intergenic Intergenic 372670 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 238-97 chr14 27325113 27325341 + 2 NA intron (NR_148991, intron 2 of 2) L1MC1|LINE|L1 -287361 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 281-298 chr3 152492440 152492617 + 2 NA Intergenic L1ME4c|LINE|L1 -151538 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 441-260 chr8 64181121 64181430 + 2 NA intron (NR_125826, intron 1 of 4) L1MA9|LINE|L1 187283 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 176-106 chr5 62828459 62828611 + 2 NA Intergenic Intergenic 249716 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 454-102 chr15 25575665 25576002 + 2 NA Intergenic Intergenic -136777 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 407-251 chr5 101475421 101475689 + 2 NA Intergenic L1ME1|LINE|L1 -572273 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 396-153 chr2 25497075 25497399 + 2 NA intron (NM_033147, intron 9 of 19) intron (NM_033147, intron 9 of 19) 152985 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 693-8 chr1 172474524 172475096 + 2 NA Intergenic L3|LINE|CR1 21917 NM_001300760 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 209-167 chr2 221044656 221044818 + 2 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat 527567 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 333-236 chr2 48821866 48822086 + 2 NA Intergenic Intergenic -66252 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 360-360 chr5 41667019 41667201 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -156509 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 314-97 chr11 43599066 43599330 + 2 NA Intergenic HAL1b|LINE|L1 17804 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 260-79 chr11 68962452 68962642 + 2 NA Intergenic AluSx1|SINE|Alu 18439 NM_198923 116512 Hs.527802 NM_198923 ENSG00000172938 MRGPRD MRGD|TGR7 MAS related GPR family member D protein-coding 498-10 chr1 168896292 168896719 + 2 NA Intergenic Intergenic 109564 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 544-192 chr5 165584107 165584472 + 2 NA Intergenic Intergenic 1114010 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 341-487 chr7 17117798 17118025 + 2 NA Intergenic Intergenic -180741 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 467-23 chr10 34832757 34833145 + 2 NA Intergenic Intergenic 17183 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 381-120 chr16 13852516 13852761 + 2 NA Intergenic AluSx1|SINE|Alu -67519 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 247-277 chr3 164962317 164962469 + 2 NA Intergenic MIRb|SINE|MIR 116103 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 238-331 chr6 102227180 102227411 + 2 NA Intergenic Intergenic 828310 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 296-139 chr14 55958523 55958746 + 2 NA Intergenic Intergenic -159777 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 320-369 chr3 189656184 189656430 + 2 NA intron (NM_003722, intron 1 of 13) L1MCa|LINE|L1 24918 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 363-215 chr2 82122865 82123078 + 2 NA Intergenic L2c|LINE|L2 -656025 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 364-326 chr5 8790673 8790955 + 2 NA Intergenic L1MEd|LINE|L1 -48918 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 365-243 chr21 24925831 24926036 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 85383 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 242-45 chr10 91141955 91142107 + 2 NA Intergenic Intergenic 11049 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 380-12 chr1 68621364 68621607 + 2 NA Intergenic Intergenic -124403 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 386-231 chr3 34586690 34586985 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 788207 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 285-292 chr3 181266424 181266656 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 34803 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 336-55 chr10 13062355 13062611 + 2 NA intron (NM_001282658, intron 4 of 6) L4_A_Mam|LINE|RTE-X 37506 NM_001282658 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 169-108 chr6 81260529 81260661 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 492086 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 583-98 chr20 7774380 7774836 + 2 NA Intergenic Intergenic 165850 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 607-56 chr17 61004069 61004590 + 2 NA intron (NM_001353144, intron 16 of 25) intron (NM_001353144, intron 16 of 25) 326478 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 155-18 chr1 248587461 248587601 + 2 NA Intergenic L1MA9|LINE|L1 6237 NM_001004693 127069 Hs.553585 NM_001004693 ENSG00000184022 OR2T10 OR1-64 olfactory receptor family 2 subfamily T member 10 protein-coding 303-347 chr5 16879042 16879281 + 2 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 57127 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 447-54 chr12 4263001 4263269 + 2 NA intron (NR_149145, intron 1 of 3) L3|LINE|CR1 -10627 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 203-242 chr9 14496155 14496303 + 2 NA intron (NM_001369458, intron 1 of 11) Tigger4b|DNA|TcMar-Tigger 35848 NM_001369468 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 228-371 chr9 71263015 71263191 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -141482 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 327-532 chrX 34094612 34094882 + 2 NA Intergenic L1M1|LINE|L1 37583 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 238-233 chr3 35837991 35838162 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 93600 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 319-72 chr10 85008956 85009229 + 2 NA Intergenic Intergenic 189813 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 371-137 chr16 73445014 73445321 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 58362 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 372-38 chr10 20130948 20131183 + 2 NA intron (NM_032812, intron 4 of 13) L1MA9|LINE|L1 314633 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 367-493 chrX 116270360 116270559 + 2 NA Intergenic Intergenic 99715 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 259-78 chr11 98500622 98500762 + 2 NA Intergenic HAL1|LINE|L1 -520257 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 199-206 chr5 127458836 127458998 + 2 NA 3' UTR (NM_032446, exon 26 of 26) 3' UTR (NM_032446, exon 26 of 26) -58723 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 126-15 chr12 28981612 28981681 + 2 NA Intergenic Intergenic -167632 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 334-291 chr2 167371234 167371403 + 2 NA Intergenic Intergenic 183946 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 448-71 chr13 21769455 21769800 + 2 NA Intergenic HAL1ME|LINE|L1 98554 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 405-208 chr3 117886772 117887129 + 2 NA Intergenic Intergenic -196025 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 144-107 chr9 13614113 13614251 + 2 NA Intergenic Intergenic -182853 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 350-36 chr10 16204840 16205128 + 2 NA Intergenic L1MA2|LINE|L1 -231959 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 327-119 chr12 70067805 70068121 + 2 NA Intergenic L1MC4|LINE|L1 -175067 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 247-371 chr6 165782741 165782878 + 2 NA Intergenic Intergenic -120529 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 395-151 chr19 27883059 27883354 + 2 NA intron (NR_146734, intron 1 of 7) HUERS-P3-int|LTR|ERV1 -89266 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 498-251 chr7 62983903 62984223 + 2 NA Intergenic ALR/Alpha|Satellite|centr 319993 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 139-33 chr15 47005095 47005185 + 2 NA Intergenic L1M1|LINE|L1 -178949 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 220-386 chr8 141818298 141818505 + 2 NA Intergenic MIRc|SINE|MIR -32088 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 206-61 chr12 126935111 126935289 + 2 NA intron (NR_104646, intron 4 of 6) L1MA9|LINE|L1 -60510 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 478-318 chrX 82272627 82272984 + 2 NA Intergenic L1MA9|LINE|L1 1070703 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 428-153 chr20 17401191 17401459 + 2 NA intron (NM_002594, intron 5 of 11) MLT1A0|LTR|ERVL-MaLR 130054 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 247-217 chr2 141023364 141023543 + 2 NA intron (NM_018557, intron 11 of 90) intron (NM_018557, intron 11 of 90) -436768 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 407-225 chr4 88503246 88503583 + 2 NA intron (NM_016323, intron 20 of 22) L1ME3A|LINE|L1 20362 NM_032906 100996939 Hs.26136 NM_032906 ENSG00000145337 PYURF PREY PIGY upstream reading frame protein-coding 236-141 chr17 33388188 33388375 + 2 NA intron (NM_001094, intron 1 of 9) MLT1D|LTR|ERVL-MaLR -95293 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 360-162 chr16 78195221 78195488 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 95700 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 129-28 chr18 75460473 75460546 + 2 NA Intergenic Intergenic -32806 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 375 chr1 3520139 3520353 + 2 NA intron (NM_001409, intron 5 of 36) intron (NM_001409, intron 5 of 36) 40544 NR_030277 693135 NR_030277 ENSG00000207776 MIR551A MIRN551A|mir-551a microRNA 551a ncRNA 336-434 chr4 149059651 149059874 + 2 NA Intergenic AluSc|SINE|Alu -94533 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 321-235 chr17 68592209 68592503 + 2 NA intron (NM_001243746, intron 1 of 11) intron (NM_001243746, intron 1 of 11) 9011 NM_017565 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 494-89 chr16 83663926 83664302 + 2 NA intron (NM_001220489, intron 7 of 12) AluJb|SINE|Alu 139862 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 164-66 chr21 17368225 17368382 + 2 NA Intergenic Intergenic -70587 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 323-484 chr7 31072243 31072424 + 2 NA intron (NM_001199637, intron 3 of 13) MLT1J2|LTR|ERVL-MaLR 19872 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 414-179 chr2 214154612 214154964 + 2 NA intron (NR_047660, intron 14 of 14) MIRc|SINE|MIR -256266 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 256-176 chr18 78182477 78182638 + 2 NA Intergenic L2a|LINE|L2 -188830 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 319-593 chrX 152350477 152350728 + 2 NA intron (NM_000808, intron 2 of 9) Tigger1|DNA|TcMar-Tigger 41697 NR_029521 406897 NR_029521 ENSG00000207957 MIR105-1 MIRN105-1|mir-105-1 microRNA 105-1 ncRNA 368-234 chr2 81321474 81321745 + 2 NA Intergenic MER6|DNA|TcMar-Tigger 145337 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 692-37 chr17 5627934 5628290 + 2 NA Intergenic AluSz|SINE|Alu -43603 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 225-319 chr7 7698555 7698772 + 2 NA intron (NM_002947, intron 2 of 7) intron (NM_002947, intron 2 of 7) 19944 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 130-62 chr4 88800784 88800888 + 2 NA intron (NM_001265578, intron 1 of 16) intron (NM_001265578, intron 1 of 16) 22525 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 309-279 chr2 154118043 154118277 + 2 NA intron (NM_052917, intron 3 of 12) L1MA7|LINE|L1 173766 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 294-428 chr7 17985202 17985399 + 2 NA Intergenic MER33|DNA|hAT-Charlie 42546 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 376-436 chrX 22655973 22656280 + 2 NA intron (NR_073010, intron 4 of 11) intron (NR_073010, intron 4 of 11) -343834 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 452-155 chr20 54290514 54290911 + 2 NA Intergenic MER41B|LTR|ERV1 82625 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 299-348 chr4 178329665 178329862 + 2 NA Intergenic MER70B|LTR|ERVL -421827 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 537-64 chr14 45872279 45872624 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -156849 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 259-133 chr15 45227267 45227443 + 2 NA Intergenic AluJr|SINE|Alu -24879 NM_004212 9153 Hs.367833 NM_004212 ENSG00000137860 SLC28A2 CNT2|HCNT2|HsT17153|SPNT1 solute carrier family 28 member 2 protein-coding 333-465 chr5 100966086 100966343 + 2 NA Intergenic L2c|LINE|L2 -62932 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 360-423 chr6 141802930 141803186 + 2 NA Intergenic L1MA1|LINE|L1 285741 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 460-307 chr9 123577240 123577544 + 2 NA intron (NM_001352968, intron 11 of 18) L1ME1|LINE|L1 -91770 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 273-18 chr1 111595368 111595582 + 2 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) 12843 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 583-12 chr1 244573458 244573944 + 2 NA intron (NM_001130957, intron 11 of 21) MLT1H|LTR|ERVL-MaLR -79347 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 274-396 chr8 118341405 118341551 + 2 NA intron (NM_001363274, intron 4 of 4) MLT1A0|LTR|ERVL-MaLR -229659 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 255-154 chr17 3087188 3087370 + 2 NA Intergenic L1PB1|LINE|L1 5717 NM_002548 4991 Hs.532771 NM_002548 ENSG00000184166 OR1D2 OLFR1|OR17-4 olfactory receptor family 1 subfamily D member 2 protein-coding 341-374 chr4 36634566 36634897 + 2 NA intron (NR_149124, intron 1 of 4) L1MA9|LINE|L1 7169 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 244-223 chr3 38344786 38344971 + 2 NA Intergenic MIR|SINE|MIR -1882 NM_001349179 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 325-281 chr2 129475482 129475748 + 2 NA Intergenic L1M4|LINE|L1 -201724 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 486-283 chr7 63140104 63140441 + 2 NA Intergenic AluSq2|SINE|Alu 163784 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 318-154 chr12 128472270 128472454 + 2 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 178270 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 252-341 chr5 105314552 105314724 + 2 NA Intergenic L1MB8|LINE|L1 215164 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 387-93 chr13 27418266 27418540 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -6216 NM_002097 2971 Hs.445977 NM_002097 ENSG00000122034 GTF3A AP2|TFIIIA general transcription factor IIIA protein-coding 152-39 chr18 8496594 8496723 + 2 NA Intergenic Intergenic -112787 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 232-27 chr10 51767699 51767878 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -68193 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 373-125 chr14 88888180 88888462 + 2 NA Intergenic L1ME1|LINE|L1 63670 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 318-178 chr14 98126315 98126540 + 2 NA Intergenic MER21B|LTR|ERVL -148303 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 203-70 chr15 26245823 26245989 + 2 NA Intergenic Intergenic 130093 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 416-98 chr12 106727988 106728242 + 2 NA intron (NM_001206691, intron 13 of 17) intron (NM_001206691, intron 13 of 17) 43386 NM_032491 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 207-169 chr21 20423529 20423719 + 2 NA Intergenic Intergenic -164939 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 421-94 chr15 98593128 98593413 + 2 NA Intergenic Intergenic -55269 NM_001291858 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 284-161 chr17 56118962 56119187 + 2 NA Intergenic L2a|LINE|L2 -34401 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 367-201 chr2 75301917 75302236 + 2 NA Intergenic L1M5|LINE|L1 -102556 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 451-196 chr6 68525940 68526219 + 2 NA Intergenic L1PB1|LINE|L1 108245 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 316-218 chr17 82611690 82611909 + 2 NA Intergenic Intergenic 36645 NM_019613 56270 Hs.132161 NM_019613 ENSG00000141580 WDR45B NEDSBAS|WDR45L|WIPI-3|WIPI3 WD repeat domain 45B protein-coding 313-248 chr2 47714467 47714666 + 2 NA Intergenic AluJr|SINE|Alu -68516 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 466-245 chr7 28859704 28860062 + 2 NA Intergenic Intergenic 98447 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 350-55 chr10 90134175 90134379 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -176904 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 481-172 chr20 16250798 16251124 + 2 NA Intergenic Intergenic -265079 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 310-490 chr7 95783236 95783434 + 2 NA intron (NM_004411, intron 1 of 16) intron (NM_004411, intron 1 of 16) 10829 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 299-405 chr6 155086239 155086441 + 2 NA Intergenic MIR3|SINE|MIR -3949 NM_012454 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 350-106 chr12 119528537 119528832 + 2 NA exon (NM_178499, exon 12 of 14) exon (NM_178499, exon 12 of 14) -65090 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 249-86 chr12 21162351 21162536 + 2 NA intron (NM_006446, intron 2 of 14) intron (NM_006446, intron 2 of 14) 31249 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 354-243 chr2 191312089 191312266 + 2 NA intron (NM_012223, intron 3 of 28) intron (NM_012223, intron 3 of 28) 66773 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 280-98 chr12 89893201 89893452 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -54367 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 162-46 chr18 8481862 8481980 + 2 NA Intergenic Intergenic -114887 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 424 chr1 12808379 12808781 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger 13889 NM_001294139 65121 Hs.454859 NM_023013 ENSG00000116721 PRAMEF1 - PRAME family member 1 protein-coding 341-262 chr2 112250377 112250707 + 2 NA intron (NM_032494, intron 1 of 8) intron (NM_032494, intron 1 of 8) 4500 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 217-114 chr14 57812133 57812304 + 2 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 52781 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 179-59 chr21 21108089 21108216 + 2 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) -39010 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 405-87 chr14 83672700 83672953 + 2 NA Intergenic Intergenic 1030194 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 328-591 chr8 139008660 139008843 + 2 NA Intergenic L1MB3|LINE|L1 -94710 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 589-9 chr10 26060747 26061273 + 2 NA intron (NM_017433, intron 10 of 34) AluY|SINE|Alu 126781 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 303-386 chr5 178100930 178101114 + 2 NA Intergenic AluJb|SINE|Alu -12510 NM_015111 23138 Hs.101761 NM_015111 ENSG00000145911 N4BP3 LZTS4 NEDD4 binding protein 3 protein-coding 273-146 chr15 67291892 67292085 + 2 NA intron (NM_001322475, intron 3 of 17) MLT1A0|LTR|ERVL-MaLR -36790 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 306-330 chr3 161672012 161672222 + 2 NA Intergenic Intergenic 175309 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 266-178 chr2 75628140 75628288 + 2 NA Intergenic Intergenic -18569 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 270-378 chr8 53823147 53823300 + 2 NA intron (NM_213620, intron 4 of 13) L1MC5a|LINE|L1 19819 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 262-343 chr5 51407217 51407456 + 2 NA Intergenic Intergenic 23888 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 346-140 chr14 72306330 72306603 + 2 NA intron (NM_001370288, intron 2 of 16) Tigger1|DNA|TcMar-Tigger -210354 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 472-51 chr12 11932946 11933411 + 2 NA Intergenic Intergenic -116683 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 418-152 chr3 29566190 29566514 + 2 NA intron (NM_001003792, intron 3 of 13) L2a|LINE|L2 285040 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 231-34 chr10 55448986 55449131 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -149984 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 450-101 chr16 51912635 51913025 + 2 NA Intergenic L1ME3A|LINE|L1 150311 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 358-85 chr12 5840538 5840794 + 2 NA intron (NM_001278596, intron 4 of 25) intron (NM_001278596, intron 4 of 25) 104593 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 265-54 chr11 8287779 8287963 + 2 NA Intergenic MIR3|SINE|MIR -19084 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 446-217 chr4 81976925 81977208 + 2 NA Intergenic Intergenic 396925 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 430-304 chr8 48293773 48294019 + 2 NA Intergenic Intergenic -257671 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 560-106 chr21 30989799 30990310 + 2 NA Intergenic Intergenic 48422 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 383-283 chr4 58285726 58285947 + 2 NA Intergenic UCON105|Unknown|Unknown 250492 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 517-202 chr4 141903772 141904164 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 267385 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 131-66 chr5 178497832 178497924 + 2 NA intron (NM_173465, intron 2 of 28) L1MEd|LINE|L1 92515 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 165-52 chr2 96984359 96984501 + 2 NA intron (NM_001122646, intron 1 of 16) L2b|LINE|L2 2150 NM_001122646 51252 Hs.107922 NM_016490 ENSG00000168754 FAM178B - family with sequence similarity 178 member B protein-coding 210-69 chr14 26086422 26086592 + 2 NA Intergenic Intergenic 466923 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 421-275 chr7 21579391 21579674 + 2 NA intron (NM_001277115, intron 8 of 81) L2b|LINE|L2 36493 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 482-224 chr6 56222562 56223033 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 24783 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 352-542 chr8 123305823 123306037 + 2 NA Intergenic L1MB3|LINE|L1 -30389 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 330-337 chr22 34940465 34940710 + 2 NA intron (NR_138042, intron 1 of 4) MIRb|SINE|MIR 57329 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 478-61 chr12 41350454 41350781 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -87122 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 335-447 chr5 160949291 160949526 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -10782 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 319-530 chr8 79423441 79423728 + 2 NA Intergenic Intergenic 91396 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 211-305 chr8 113575983 113576187 + 2 NA Intergenic L1MA7|LINE|L1 -139146 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 604-95 chr2 233143657 233144096 + 2 NA intron (NM_001017915, intron 6 of 26).2 (GTGATG)n|Simple_repeat|Simple_repeat 83534 NM_001017915 3635 Hs.262886 NM_005541 ENSG00000168918 INPP5D SHIP|SHIP-1|SHIP1|SIP-145|hp51CN|p150Ship inositol polyphosphate-5-phosphatase D protein-coding 572-156 chr6 131858479 131859006 + 2 NA exon (NM_006208, exon 7 of 25) exon (NM_006208, exon 7 of 25) 50722 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 154-64 chr21 30865963 30866072 + 2 NA Intergenic Intergenic 15563 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 217-48 chr10 81311524 81311684 + 2 NA Intergenic L1MB7|LINE|L1 -563590 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 388-175 chr2 213502792 213503099 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 218481 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 235-354 chr8 77898882 77899026 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 448257 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 410-90 chr14 76059508 76059839 + 2 NA TTS (NM_001255995) TTS (NM_001255995) 73910 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 320-414 chr5 7845516 7845703 + 2 NA intron (NM_001089584, intron 1 of 2) intron (NM_001089584, intron 1 of 2) 5524 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 307-246 chr2 104521971 104522202 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -11577 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 218-119 chr16 62200015 62200226 + 2 NA Intergenic Intergenic -163682 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 232-228 chr22 27515712 27515910 + 2 NA Intergenic MIRb|SINE|MIR 205160 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 402-45 chr11 27580393 27580668 + 2 NA intron (NR_033315, intron 2 of 6) intron (NR_033315, intron 2 of 6) 54097 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 510-111 chr18 4919442 4919853 + 2 NA Intergenic L1MB3|LINE|L1 -161535 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 369-248 chr21 19685871 19686180 + 2 NA Intergenic L1MCb|LINE|L1 213730 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 320-149 chr14 51709030 51709216 + 2 NA intron (NM_001042481, intron 8 of 14) intron (NM_001042481, intron 8 of 14) -8160 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 537-8 chr1 92112306 92112756 + 2 NA intron (NM_183242, intron 4 of 8) Tigger13a|DNA|TcMar-Tigger 32186 NM_183242 284697 Hs.676102 NM_183242 ENSG00000189195 BTBD8 - BTB domain containing 8 protein-coding 331-257 chr2 45040230 45040400 + 2 NA Intergenic Intergenic -30863 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 509-40 chr11 54972781 54973174 + 2 NA Intergenic ALR/Alpha|Satellite|centr 266145 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 518-138 chr2 105665748 105666123 + 2 NA Intergenic Intergenic -55376 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 118-17 chr12 80677572 80677667 + 2 NA intron (NM_001145026, intron 43 of 44) L2a|LINE|L2 -30015 NM_002469 4618 Hs.35937 NM_002469 ENSG00000111046 MYF6 CNM3|MRF4|bHLHc4|myf-6 myogenic factor 6 protein-coding 163-72 chr20 32719979 32720098 + 2 NA intron (NM_001099339, intron 3 of 8) MIRb|SINE|MIR 23970 NM_053041 149951 Hs.408427 NM_053041 ENSG00000149600 COMMD7 C20orf92|dJ1085F17.3 COMM domain containing 7 protein-coding 254-311 chr5 60075298 60075460 + 2 NA intron (NM_001349243, intron 2 of 16) L1PREC2|LINE|L1 -181653 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 525-109 chr2 22878048 22878404 + 2 NA Intergenic Intergenic 341747 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 221-90 chr15 27570155 27570300 + 2 NA Intergenic L1ME2|LINE|L1 -408908 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 362-354 chr5 109595155 109595381 + 2 NA Intergenic Intergenic -94098 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 365-258 chr3 54494219 54494566 + 2 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 145465 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 189-175 chr6 36081703 36081834 + 2 NA intron (NM_001315, intron 8 of 11) L1MB4|LINE|L1 -48745 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 297-209 chr2 45855272 45855472 + 2 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 203697 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 167-74 chr21 24236748 24236878 + 2 NA Intergenic Intergenic 84564 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 222-18 chr1 190718680 190718807 + 2 NA intron (NR_033922, intron 1 of 4) L1M5|LINE|L1 93853 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 568-20 chr10 118427732 118428268 + 2 NA Intergenic Intergenic 70892 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 471-184 chr4 30856722 30857043 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 136513 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 477-202 chr3 67023619 67024084 + 2 NA Intergenic Intergenic 25544 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 135-25 chr16 35401763 35401868 + 2 NA Intergenic Intergenic 38284 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 344-221 chr2 7631870 7632203 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy 210775 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 480-124 chr18 34527625 34527925 + 2 NA intron (NM_001198945, intron 1 of 10) intron (NM_001198945, intron 1 of 10) 34463 NM_001392 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 237-195 chr2 154119129 154119307 + 2 NA intron (NM_052917, intron 3 of 12) L1MA7|LINE|L1 174824 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 156-61 chr20 24414617 24414737 + 2 NA Intergenic Intergenic -54522 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 395-79 chr12 118787399 118787700 + 2 NA Intergenic L1MC3|LINE|L1 -25870 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 394-310 chr7 86559226 86559469 + 2 NA Intergenic Intergenic -84562 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 285-191 chr2 17244477 17244695 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 273854 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 152-49 chr2 58377953 58378096 + 2 NA Intergenic Intergenic 102147 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 475-39 chr11 55703707 55704082 + 2 NA Intergenic L1M3e|LINE|L1 38727 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 702-88 chr6 113252513 113253083 + 2 NA Intergenic L1PA13|LINE|L1 180649 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 204-156 chr2 179551918 179552039 + 2 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 10610 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 464-68 chr14 72365600 72365941 + 2 NA intron (NM_001370288, intron 3 of 16) (ATAA)n|Simple_repeat|Simple_repeat -151050 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 204-294 chr8 127172193 127172324 + 2 NA Intergenic L2|LINE|L2 25369 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 271-155 chr16 51931211 51931413 + 2 NA Intergenic Intergenic 142623 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 288-136 chr15 67976061 67976218 + 2 NA Intergenic L1MB7|LINE|L1 -78040 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 353-465 chr6 142245653 142245945 + 2 NA Intergenic L1MC3|LINE|L1 -56120 NM_020455 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 208-8 chr1 106487926 106488080 + 2 NA Intergenic L1MB2|LINE|L1 -330236 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 269-423 chr9 30154342 30154549 + 2 NA Intergenic L1MCa|LINE|L1 254009 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 252-108 chr13 112632857 112633076 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -14078 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 246-248 chr3 15619039 15619254 + 2 NA intron (NM_001281725, intron 1 of 3) L1MC4|LINE|L1 17177 NM_001281725 686 Hs.444197 NM_001281723 ENSG00000169814 BTD - biotinidase protein-coding 411-205 chr4 67222354 67222647 + 2 NA Intergenic L2|LINE|L2 199500 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 398-235 chr4 29744846 29745084 + 2 NA Intergenic L1MCa|LINE|L1 530673 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 308-371 chr5 7766191 7766409 + 2 NA intron (NM_020546, intron 16 of 24) intron (NM_020546, intron 16 of 24) 84833 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 314-310 chr2 163887925 163888202 + 2 NA Intergenic Intergenic -152055 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 357-315 chr4 86255421 86255606 + 2 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 99131 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 343-579 chr9 32683193 32683385 + 2 NA Intergenic L1MA1|LINE|L1 -47620 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 179-14 chr12 24977957 24978133 + 2 NA Intergenic Intergenic 19420 NM_001101339 196415 Hs.434453 NM_001101339 C12orf77 - chromosome 12 open reading frame 77 protein-coding 243-470 chr9 25181818 25181994 + 2 NA Intergenic L1PA16|LINE|L1 496952 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 388-106 chr14 41046802 41047139 + 2 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 92259 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 396-230 chr3 114640600 114640948 + 2 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -15829 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 510-114 chr18 13972168 13972597 + 2 NA Intergenic Intergenic -56675 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 257-231 chr20 11528822 11529066 + 2 NA Intergenic Intergenic -255561 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 528-10 chr1 79596701 79597188 + 2 NA Intergenic AluJb|SINE|Alu -590214 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 319-327 chr3 31716495 31716733 + 2 NA intron (NR_049771, intron 2 of 4) intron (NR_049771, intron 2 of 4) 12401 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 551-108 chr20 58744657 58745065 + 2 NA Intergenic Intergenic -28564 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 582-45 chr15 38727724 38728226 + 2 NA Intergenic Intergenic 31377 NR_160786 412-271 chr6 11897785 11898024 + 2 NA Intergenic L1MC1|LINE|L1 103340 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 289-472 chr8 123441517 123441767 + 2 NA 3' UTR (NM_001283024, exon 6 of 6) 3' UTR (NM_001283024, exon 6 of 6) 24868 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 286-254 chr20 59716978 59717212 + 2 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) -4115 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 409-294 chr8 78834021 78834289 + 2 NA Intergenic HAL1|LINE|L1 -3374 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 413-253 chr5 169204790 169205047 + 2 NA intron (NM_003062, intron 3 of 35) L2|LINE|L2 58776 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 205-39 chr10 87927429 87927601 + 2 NA intron (NM_001304717, intron 4 of 9) MIR3|SINE|MIR 63890 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 523-202 chr4 89727364 89727708 + 2 NA intron (NM_007308, intron 4 of 4) intron (NM_007308, intron 4 of 4) -108865 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 229-82 chr12 3970315 3970496 + 2 NA Intergenic Intergenic -96957 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 119-12 chr11 98130630 98130709 + 2 NA Intergenic Intergenic -890280 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 427-142 chr21 24498422 24498766 + 2 NA intron (NR_135519, intron 1 of 2) intron (NR_135519, intron 1 of 2) 69854 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 224-44 chr11 13456093 13456248 + 2 NA intron (NM_032320, intron 1 of 8) intron (NM_032320, intron 1 of 8) 7127 NM_032320 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 266-28 chr1 235937495 235937685 + 2 NA Intergenic Intergenic -53877 NR_102436 1130 Hs.532411 NM_000081 ENSG00000143669 LYST CHS|CHS1 lysosomal trafficking regulator protein-coding 478 chr1 43496059 43496385 + 2 NA Intergenic L1ME4a|LINE|L1 -29815 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 389-357 chr8 47861504 47861787 + 2 NA intron (NM_001081640, intron 44 of 84) intron (NM_001081640, intron 44 of 84) 98491 NM_001081640 5591 Hs.491682 NM_006904 ENSG00000253729 PRKDC DNA-PKC|DNA-PKcs|DNAPK|DNAPKc|DNPK1|HYRC|HYRC1|IMD26|XRCC7|p350 protein kinase, DNA-activated, catalytic subunit protein-coding 463-177 chr22 48307642 48308006 + 2 NA Intergenic Intergenic 33460 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 239-436 chr9 82603692 82603845 + 2 NA Intergenic Intergenic 459374 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 472-204 chr3 29088684 29089039 + 2 NA Intergenic Intergenic 192078 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 239-192 chr2 150354895 150355068 + 2 NA Intergenic Intergenic -97974 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 350-504 chr8 26808913 26809219 + 2 NA intron (NM_001322504, intron 1 of 1) L2b|LINE|L2 56589 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 362-306 chr4 64865919 64866185 + 2 NA Intergenic (ATATGTA)n|Simple_repeat|Simple_repeat 138448 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 316-398 chr4 67853639 67853856 + 2 NA intron (NM_004262, intron 3 of 9) intron (NM_004262, intron 3 of 9) 30255 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 339-380 chr3 134646748 134646978 + 2 NA intron (NM_178554, intron 2 of 10) intron (NM_178554, intron 2 of 10) 4155 NM_001366276 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 311-313 chr20 60706459 60706628 + 2 NA Intergenic L1MC3|LINE|L1 141981 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 524-256 chr8 58733732 58734087 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -74056 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 513-267 chr7 86201394 86201711 + 2 NA Intergenic Intergenic -442357 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 191-144 chr4 24238459 24238635 + 2 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) 234358 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 364-331 chr5 17489675 17489914 + 2 NA Intergenic Intergenic 45784 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 180-147 chr5 165498215 165498340 + 2 NA Intergenic Intergenic 1027998 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 284-170 chr18 6691442 6691659 + 2 NA Intergenic Intergenic -38166 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 321-533 chr7 89526401 89526657 + 2 NA Intergenic Intergenic -592871 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 327-321 chr3 22295980 22296166 + 2 NA Intergenic MER115|DNA|hAT-Tip100 338934 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 217-203 chr20 16149273 16149413 + 2 NA Intergenic L1MC1|LINE|L1 -163461 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 232-257 chr3 182626824 182627045 + 2 NA Intergenic Intergenic -119810 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 252-39 chr10 46241621 46241839 + 2 NA intron (NR_103828, intron 2 of 2) L1M2|LINE|L1 27878 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 250-58 chr10 123082646 123082856 + 2 NA Intergenic Intergenic -53219 NM_001105574 340784 Hs.531194 NM_001105574 ENSG00000188620 HMX3 NKX-5.1|NKX5.1|Nkx5-1 H6 family homeobox 3 protein-coding 228-120 chr16 26788229 26788401 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -278612 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 227-214 chr21 27832739 27832959 + 2 NA Intergenic Intergenic 110470 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 186-86 chr2 109324416 109324591 + 2 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -10878 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 322-93 chr11 79534279 79534480 + 2 NA Intergenic MIR|SINE|MIR -93349 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 348-236 chr2 138514554 138514756 + 2 NA intron (NM_001001664, intron 1 of 10) L1ME3A|LINE|L1 12885 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 556-199 chr6 161933224 161933624 + 2 NA intron (NM_004562, intron 6 of 11) Charlie1b|DNA|hAT-Charlie 462447 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 403-317 chr8 135903908 135904119 + 2 NA Intergenic L1MEd|LINE|L1 446557 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 332-189 chr16 82819834 82820091 + 2 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 46643 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 327-168 chr15 48230869 48231123 + 2 NA intron (NM_001184832, intron 7 of 26) intron (NM_001184832, intron 7 of 26) 24694 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 194-143 chr4 60777250 60777425 + 2 NA Intergenic Intergenic -145282 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 306-400 chr5 94065823 94066070 + 2 NA intron (NM_001163418, intron 1 of 8) L1MA3|LINE|L1 45717 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 169-118 chr7 31672236 31672347 + 2 NA Intergenic Intergenic -14726 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 516-61 chr13 44071798 44072145 + 2 NA Intergenic L1MEc|LINE|L1 -38578 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 253-292 chr4 36751048 36751178 + 2 NA Intergenic L1ME3G|LINE|L1 -109213 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 271-423 chr8 31350742 31350960 + 2 NA Intergenic Intergenic -288901 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 264-324 chr5 60975353 60975549 + 2 NA intron (NM_174889, intron 1 of 3) L2|LINE|L2 30246 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 322-50 chr10 17378525 17378764 + 2 NA intron (NM_001004470, intron 3 of 7) (CAA)n|Simple_repeat|Simple_repeat -8292 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 221-196 chr3 103123203 103123374 + 2 NA Intergenic Intergenic 400828 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 232-270 chr4 70948568 70948750 + 2 NA intron (NM_173468, intron 1 of 5) HAL1ME|LINE|L1 -44990 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 534-115 chr2 76915507 76916033 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -70195 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 570-166 chr5 157413544 157414107 + 2 NA intron (NR_136204, intron 1 of 3) L1MA4A|LINE|L1 -46194 NM_001099287 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA like domain containing 4 protein-coding 481-16 chr1 232370446 232370778 + 2 NA Intergenic AluSz|SINE|Alu 144996 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 187-112 chr3 97421290 97421413 + 2 NA intron (NM_001080448, intron 6 of 17) L1ME3F|LINE|L1 -18256 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 240-44 chr10 43935818 43935979 + 2 NA intron (NR_033846, intron 2 of 7) L1MEg|LINE|L1 23496 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 499-120 chr2 77333587 77333893 + 2 NA intron (NR_146416, intron 1 of 1) THE1B-int|LTR|ERVL-MaLR 188636 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 149-48 chr2 9227963 9228097 + 2 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 21218 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 224-102 chr15 89539306 89539503 + 2 NA Intergenic L1MEd|LINE|L1 -15370 NR_027076 283761 Hs.459288 NR_027074 LINC00928 - long intergenic non-protein coding RNA 928 ncRNA 149-105 chr9 80488640 80488746 + 2 NA Intergenic Intergenic 513670 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 661-5 chr1 191479872 191480524 + 2 NA Intergenic Intergenic -251700 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 335-418 chr5 30618351 30618574 + 2 NA Intergenic L1MB2|LINE|L1 -575224 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 353-565 chrX 42381836 42382048 + 2 NA Intergenic Intergenic 396221 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 224-339 chr8 130024707 130024893 + 2 NA Intergenic Intergenic -7671 NM_001353245 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 291-155 chr15 96810573 96810788 + 2 NA Intergenic L1MEg|LINE|L1 27245 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 229-376 chr8 14394513 14394689 + 2 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 458909 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 304-223 chr19 30905606 30905885 + 2 NA Intergenic L1ME4a|LINE|L1 -261765 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 843-17 chr14 27401349 27401894 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -210967 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 532-61 chr13 74801632 74802030 + 2 NA Intergenic L1MA3|LINE|L1 248988 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 483-93 chr17 79672937 79673380 + 2 NA Intergenic Intergenic 34091 NR_039893 100616170 NR_039893 ENSG00000266665 MIR4739 mir-4739 microRNA 4739 ncRNA 189-185 chr7 16732564 16732739 + 2 NA Intergenic Intergenic -21104 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 385-62 chr12 18400817 18401041 + 2 NA intron (NM_001288774, intron 16 of 32) intron (NM_001288774, intron 16 of 32) 139389 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 190-99 chr2 224117111 224117261 + 2 NA Intergenic L1PB3|LINE|L1 -77867 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 300-188 chr2 49117756 49117973 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 36651 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 352-412 chr5 42027710 42028053 + 2 NA Intergenic L1MA2|LINE|L1 102600 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 211-217 chr4 156727873 156728042 + 2 NA Intergenic Intergenic 243842 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 622-68 chr2 132747557 132747987 + 2 NA intron (NM_207481, intron 14 of 17) MIRb|SINE|MIR -76246 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 214-78 chr12 31347594 31347780 + 2 NA Intergenic Intergenic -21500 NM_001135811 58516 Hs.505154 NM_021238 ENSG00000139146 SINHCAF C12orf14|FAM60A|L4|TERA SIN3-HDAC complex associated factor protein-coding 302-76 chr11 66887784 66888006 + 2 NA intron (NM_001040716, intron 3 of 22) MLT1D|LTR|ERVL-MaLR 20058 NM_022172 5091 Hs.89890 NM_000920 ENSG00000173599 PC PCB pyruvate carboxylase protein-coding 373-94 chr12 89914906 89915150 + 2 NA Intergenic Intergenic -32665 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 232-163 chr2 35595435 35595607 + 2 NA Intergenic LOR1a|LTR|ERV1 124116 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 228-319 chr7 62590191 62590399 + 2 NA Intergenic ALR/Alpha|Satellite|centr 713761 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 210-91 chr16 9113366 9113545 + 2 NA intron (NM_014117, intron 3 of 3) intron (NM_014117, intron 3 of 3) 21811 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 539-145 chr3 94565661 94566061 + 2 NA Intergenic Intergenic -372402 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 308-529 chr8 138323534 138323706 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 173641 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 403-151 chr2 30745347 30745596 + 2 NA intron (NM_144575, intron 11 of 22) intron (NM_144575, intron 11 of 22) 61975 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 305-500 chr7 25372906 25373195 + 2 NA Intergenic HAL1|LINE|L1 -144564 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 403-303 chr8 65255105 65255330 + 2 NA Intergenic L2b|LINE|L2 -74877 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 339-367 chr3 84415054 84415305 + 2 NA Intergenic L1MA4|LINE|L1 454396 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 852-17 chr14 70351273 70351879 + 2 NA intron (NM_001202548, intron 3 of 5) L1ME3B|LINE|L1 8107 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 333-65 chr10 97981991 97982267 + 2 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) 48492 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 203-109 chr2 51487182 51487306 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 454643 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 235-267 chr4 133934975 133935136 + 2 NA Intergenic Intergenic 266734 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 444-82 chr16 23402106 23402507 + 2 NA intron (NM_153603, intron 13 of 16) HAL1b|LINE|L1 50883 NM_153603 91949 Hs.185807 NM_153603 ENSG00000168434 COG7 CDG2E component of oligomeric golgi complex 7 protein-coding 117-43 chr7 158141798 158141877 + 2 NA intron (NM_130843, intron 6 of 21) intron (NM_130843, intron 6 of 21) 287252 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 265-139 chr17 27872966 27873194 + 2 NA Intergenic L1MB7|LINE|L1 20285 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 249-395 chr7 122938442 122938684 + 2 NA Intergenic L1PB4|LINE|L1 -51804 NM_001009571 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 153-70 chr3 184089436 184089568 + 2 NA Intergenic MER92-int|LTR|ERV1 -7562 NM_198313 285242 Hs.449179 NM_182589 ENSG00000186038 HTR3E 5-HT3-E|5-HT3E|5-HT3c1 5-hydroxytryptamine receptor 3E protein-coding 383-338 chr6 62627940 62628231 + 2 NA Intergenic Intergenic -341858 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 258-176 chr19 51831816 51831982 + 2 NA intron (NR_163433, intron 9 of 11) L2b|LINE|L2 36742 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 325-531 chr8 29323079 29323254 + 2 NA Intergenic SATR1|Satellite|Satellite 25639 NM_057158 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 224-258 chr5 114967242 114967401 + 2 NA Intergenic L1MA9|LINE|L1 -193908 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 291-492 chr9 79543546 79543786 + 2 NA Intergenic MIRb|SINE|MIR -28107 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 302-435 chr8 34213168 34213375 + 2 NA Intergenic Intergenic -570650 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 251-252 chr3 142053619 142053841 + 2 NA intron (NM_001178139, intron 3 of 12) L1ME1|LINE|L1 -25104 NM_001178142 7029 Hs.379018 NM_006286 ENSG00000114126 TFDP2 DP2 transcription factor Dp-2 protein-coding 322-73 chr10 81691507 81691714 + 2 NA Intergenic L1PB1|LINE|L1 -183584 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 697-10 chr11 21197832 21198287 + 2 NA intron (NM_201551, intron 13 of 18) MLT1G3|LTR|ERVL-MaLR 528473 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 411-215 chr4 134725448 134725717 + 2 NA Intergenic Intergenic 301714 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 256-269 chr3 108069213 108069388 + 2 NA intron (NM_198793, intron 3 of 8) L1ME4a|LINE|L1 21788 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 338-465 chr6 24128180 24128422 + 2 NA intron (NM_080723, intron 2 of 3) intron (NM_080723, intron 2 of 3) 2086 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 303-229 chr2 161838067 161838296 + 2 NA intron (NM_001354443, intron 4 of 25) L1ME1|LINE|L1 213765 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 239-52 chr11 15827415 15827647 + 2 NA Intergenic Intergenic 142090 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 334-40 chr1 231663441 231663622 + 2 NA intron (NM_001164556, intron 1 of 4) intron (NM_001164556, intron 1 of 4) 36716 NM_001164556 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 480-90 chr15 26368861 26369179 + 2 NA Intergenic Intergenic 253207 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 363-318 chr4 38643481 38643804 + 2 NA intron (NR_026804, intron 1 of 7) intron (NR_026804, intron 1 of 7) -20557 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 248-65 chr11 63099773 63099981 + 2 NA intron (NM_001136506, intron 5 of 9) L1MA3|LINE|L1 44344 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 323-12 chr1 74128480 74128663 + 2 NA intron (NM_001105659, intron 4 of 7) L1MA3|LINE|L1 69605 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 355-44 chr10 39145554 39145734 + 2 NA Intergenic ALR/Alpha|Satellite|centr 449048 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 260-449 chr8 135415373 135415560 + 2 NA Intergenic Intergenic -41990 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 374-130 chr16 61776141 61776473 + 2 NA intron (NM_001796, intron 8 of 11) MIR|SINE|MIR 260131 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 310-504 chr8 41187732 41187949 + 2 NA Intergenic MER41B|LTR|ERV1 83303 NR_049801 100847068 NR_049801 ENSG00000263372 MIR548AO - microRNA 548ao ncRNA 456-198 chr3 53573280 53573579 + 2 NA intron (NM_001128840, intron 3 of 47) L2a|LINE|L2 78818 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 205-214 chr5 6303141 6303289 + 2 NA Intergenic Intergenic 34077 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 177-46 chr14 20229519 20229653 + 2 NA exon (NM_001348273, exon 1 of 1) exon (NM_001348273, exon 1 of 1) 605 NM_001348273 390441 NM_001348273 ENSG00000258806 OR11H7 OR11H7P olfactory receptor family 11 subfamily H member 7 (gene/pseudogene) protein-coding 737-34 chr17 77299204 77299643 + 2 NA intron (NM_001113492, intron 1 of 11) AluJr4|SINE|Alu 11532 NM_001113492 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 539-146 chr3 98012873 98013323 + 2 NA intron (NM_001105580, intron 4 of 9) intron (NM_001105580, intron 4 of 9) 22206 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 335-103 chr11 96494443 96494662 + 2 NA intron (NR_047481, intron 1 of 4) MLT1I|LTR|ERVL-MaLR 12325 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 376-36 chr10 12791296 12791553 + 2 NA intron (NM_001351032, intron 8 of 11) L1MB3|LINE|L1 -66071 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 168-89 chr5 51019403 51019559 + 2 NA Intergenic Intergenic -49294 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 300-211 chr2 117278404 117278643 + 2 NA Intergenic L1MC4|LINE|L1 -536168 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 593-110 chr4 100853949 100854341 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -179032 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 413-203 chr3 180221320 180221652 + 2 NA Intergenic L1M3|LINE|L1 -184549 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 316-147 chr12 124707302 124707492 + 2 NA Intergenic Intergenic 132274 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 316-90 chr11 8795309 8795529 + 2 NA intron (NR_120590, intron 4 of 4) MER5A|DNA|hAT-Charlie 15255 NM_213618 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 365-255 chr3 41167942 41168199 + 2 NA Intergenic LTR78B|LTR|ERV1 -31435 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 285-251 chr22 26247571 26247826 + 2 NA intron (NM_001184776, intron 1 of 14) MLT1C|LTR|ERVL-MaLR 78224 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 378-242 chr2 120276691 120277043 + 2 NA intron (NM_002881, intron 1 of 4) MIRb|SINE|MIR 24015 NM_002881 5899 Hs.469820 NM_002881 ENSG00000144118 RALB - RAS like proto-oncogene B protein-coding 314-261 chr2 5971141 5971426 + 2 NA non-coding (NR_026832, exon 2 of 2) non-coding (NR_026832, exon 2 of 2) -3379 NR_106980 102465693 NR_106980 ENSG00000276733 MIR7158 hsa-mir-7158 microRNA 7158 ncRNA 552-145 chr3 128535956 128536369 + 2 NA Intergenic MIRc|SINE|MIR 28327 NR_026954 90246 Hs.635164 NR_026954 LOC90246 - uncharacterized LOC90246 ncRNA 409-78 chr14 66709210 66709507 + 2 NA intron (NM_001024218, intron 2 of 21) MER44C|DNA|TcMar-Tigger 201951 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 406-76 chr14 48562521 48562804 + 2 NA Intergenic HERVIP10FH-int|LTR|ERV1 -767648 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 361-95 chr12 18370090 18370419 + 2 NA intron (NM_001288774, intron 12 of 32) L2c|LINE|L2 108714 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 712-78 chr5 101600697 101601204 + 2 NA Intergenic L1MA9|LINE|L1 695334 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 219-46 chr11 38467737 38467946 + 2 NA Intergenic L2b|LINE|L2 178515 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 494-303 chr8 140780929 140781217 + 2 NA intron (NR_148036, intron 14 of 34) intron (NR_148036, intron 14 of 34) -48420 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 277-57 chr10 66355392 66355598 + 2 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -570541 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 330-321 chr20 52784136 52784346 + 2 NA Intergenic Intergenic 163403 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 457-193 chr5 18754834 18755285 + 2 NA Intergenic Intergenic 947785 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 532-49 chr12 62444154 62444573 + 2 NA Intergenic AluSg|SINE|Alu -22463 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 256-241 chr21 31139242 31139407 + 2 NA intron (NM_001353684, intron 7 of 12) intron (NM_001353684, intron 7 of 12) 21616 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 313-261 chr2 82770811 82770998 + 2 NA Intergenic L1PA15|LINE|L1 -85899 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 258-129 chr14 72039272 72039427 + 2 NA intron (NM_001370288, intron 2 of 16) MER4CL34|LTR|ERV1 105822 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 405-36 chr10 82115545 82115944 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 117176 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 220-372 chr8 99077766 99077961 + 2 NA intron (NR_047582, intron 4 of 8) L1M2|LINE|L1 64597 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 288-30 chr1 192713612 192713845 + 2 NA Intergenic L1M1|LINE|L1 -2600 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 382-50 chr10 115707394 115707602 + 2 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 487291 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 360-278 chr21 30850823 30851142 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -21223 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 256-259 chr3 74569562 74569757 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -48519 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 476-243 chr6 129870302 129870728 + 2 NA Intergenic Tigger12|DNA|TcMar-Tigger -9200 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 371-283 chr4 96832595 96832909 + 2 NA Intergenic Intergenic 522049 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 326-37 chr1 181500077 181500394 + 2 NA intron (NM_001205293, intron 1 of 47) intron (NM_001205293, intron 1 of 47) 16718 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 356-396 chr5 60481936 60482146 + 2 NA intron (NM_001364599, intron 1 of 16) MLT1A0|LTR|ERVL-MaLR -5672 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 382-117 chr15 24912141 24912416 + 2 NA intron (NM_001349456, intron 2 of 12) FLAM_C|SINE|Alu -42615 NM_001349463 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 652-90 chr4 158978632 158979012 + 2 NA intron (NM_152543, intron 1 of 4) L1PA7|LINE|L1 56407 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 238-364 chr7 92761965 92762135 + 2 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 71909 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 261-85 chr12 128876108 128876303 + 2 NA intron (NM_144669, intron 2 of 7) intron (NM_144669, intron 2 of 7) 22727 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 280-206 chr2 119633731 119633945 + 2 NA intron (NR_073132, intron 20 of 24) L1MB1|LINE|L1 -45329 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 354-333 chr4 71122466 71122655 + 2 NA Intergenic Intergenic -64699 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 277-346 chr6 40204330 40204530 + 2 NA Intergenic L1MA9|LINE|L1 151576 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 323-502 chr7 62987210 62987504 + 2 NA Intergenic ALR/Alpha|Satellite|centr 316699 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 358-115 chr14 30548017 30548332 + 2 NA intron (NR_151720, intron 3 of 3) L1MB7|LINE|L1 -10949 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 430-279 chr7 23945384 23945724 + 2 NA Intergenic L1M2|LINE|L1 235335 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 480-82 chr14 78721792 78722107 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 318230 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 387-243 chr4 17290486 17290704 + 2 NA Intergenic Intergenic 30287 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 260-100 chr12 33007683 33007890 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -110940 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 383-340 chr6 76840485 76840743 + 2 NA Intergenic Intergenic -246991 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 318-53 chr10 25387184 25387482 + 2 NA intron (NM_020752, intron 2 of 10) L1MB2|LINE|L1 -211057 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 606-169 chr8 131782566 131782989 + 2 NA Intergenic Intergenic -121316 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 594-75 chr2 154229321 154229830 + 2 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 227863 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 405-278 chr6 66207449 66207821 + 2 NA Intergenic MER61C|LTR|ERV1 419756 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 373-176 chr19 46150980 46151213 + 2 NA intron (NM_001002915, intron 2 of 4) L1MA7|LINE|L1 2858 NM_001135113 147920 Hs.99376 NM_001002915 ENSG00000204866 IGFL2 UNQ645|VPRI645 IGF like family member 2 protein-coding 378-2 chr1 31938476 31938845 + 2 NA promoter-TSS (NM_001369859) promoter-TSS (NM_001369859) -292 NM_001195101 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 603-57 chr15 100687066 100687632 + 2 NA Intergenic Intergenic 84760 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 369-91 chr12 115589268 115589611 + 2 NA Intergenic Intergenic 559215 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 242-261 chr4 62305271 62305423 + 2 NA Intergenic L1MA3|LINE|L1 -143582 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 301-12 chr1 115444173 115444439 + 2 NA Intergenic L1MC5a|LINE|L1 -106070 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 328-572 chr8 107663587 107663812 + 2 NA Intergenic Intergenic -165781 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 232-63 chr11 109807312 109807473 + 2 NA Intergenic AluJo|SINE|Alu -286000 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 297-108 chr12 47018466 47018675 + 2 NA Intergenic Intergenic -61033 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 223-345 chr8 88066845 88066996 + 2 NA intron (NM_005941, intron 7 of 9) intron (NM_005941, intron 7 of 9) -192905 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 176-57 chr2 78544354 78544461 + 2 NA Intergenic L1MD|LINE|L1 -1124 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 360-261 chr20 10629568 10629864 + 2 NA Intergenic Intergenic 19979 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 347-406 chr5 94440856 94441102 + 2 NA intron (NM_001145678, intron 13 of 20) intron (NM_001145678, intron 13 of 20) 177625 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 124-40 chr2 194192037 194192106 + 2 NA Intergenic L1MA4|LINE|L1 -152198 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 158-126 chr9 80113387 80113508 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 138424 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 299-154 chr16 17627831 17628003 + 2 NA Intergenic Intergenic -156957 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 484-176 chr3 81841368 81841792 + 2 NA Intergenic Intergenic -79935 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 358-310 chr3 135640497 135640732 + 2 NA Intergenic Intergenic -325114 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 609-93 chr4 148702580 148702977 + 2 NA Intergenic L1MEd|LINE|L1 239600 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 653-78 chr20 48740002 48740484 + 2 NA intron (NM_020820, intron 3 of 39) intron (NM_020820, intron 3 of 39) 87756 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 275-100 chr14 32566435 32566682 + 2 NA intron (NM_004274, intron 4 of 13) L2a|LINE|L2 237260 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 316-306 chr2 217348530 217348829 + 2 NA intron (NR_026597, intron 8 of 12) L1PA13|LINE|L1 65946 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 863-28 chr3 168688910 168689593 + 2 NA intron (NR_021485, intron 5 of 15) intron (NR_021485, intron 5 of 15) 137397 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 237-182 chr2 88531181 88531327 + 2 NA Intergenic L1ME4a|LINE|L1 6605 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 236-254 chr4 59077278 59077445 + 2 NA Intergenic L1MEc|LINE|L1 63788 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 401-280 chr6 47383048 47383354 + 2 NA Intergenic L1MA3|LINE|L1 -73296 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 563-137 chr4 34415123 34415612 + 2 NA Intergenic (TATACA)n|Simple_repeat|Simple_repeat -145620 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 341-84 chr11 61997244 61997436 + 2 NA Intergenic Intergenic -29706 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 215-280 chr6 102700751 102700953 + 2 NA Intergenic L1M1|LINE|L1 1301867 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 768-46 chr7 31865699 31866151 + 2 NA intron (NM_001191059, intron 7 of 18) intron (NM_001191059, intron 7 of 18) 178710 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 546-91 chr18 5212726 5213131 + 2 NA Intergenic Intergenic -15176 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 345-477 chr6 160370855 160371047 + 2 NA intron (NM_021977, intron 1 of 10) L2c|LINE|L2 22573 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 337-70 chr10 106716152 106716433 + 2 NA intron (NM_001206569, intron 6 of 25) intron (NM_001206569, intron 6 of 25) 448414 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 353-162 chr15 87301803 87302005 + 2 NA Intergenic Intergenic -275025 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 155-2 chr1 47527432 47527566 + 2 NA Intergenic Intergenic -90182 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 324-83 chr11 31187549 31187830 + 2 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 182050 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 394-330 chr8 108835688 108836026 + 2 NA Intergenic Intergenic -48263 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 395-198 chr20 44546215 44546582 + 2 NA intron (NM_007066, intron 1 of 3) intron (NM_007066, intron 1 of 3) 14523 NM_007066 11142 Hs.472831 NM_007066 ENSG00000168734 PKIG PKI-gamma cAMP-dependent protein kinase inhibitor gamma protein-coding 532-25 chr10 113246117 113246501 + 2 NA Intergenic Intergenic 117038 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 152-94 chr8 117002139 117002283 + 2 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 51236 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 279-155 chr19 32111810 32112017 + 2 NA Intergenic Intergenic -5997 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 336-17 chr1 61747202 61747373 + 2 NA intron (NM_001350145, intron 1 of 43) intron (NM_001350145, intron 1 of 43) 4807 NM_001350145 10207 Hs.478125 NM_005799 ENSG00000132849 PATJ Cipp|INADL|InaD-like|hINADL PATJ crumbs cell polarity complex component protein-coding 305-210 chr18 2425244 2425425 + 2 NA Intergenic L2|LINE|L2 146171 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 309-34 chr1 239455644 239455911 + 2 NA intron (NM_001347716, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 69209 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 209-304 chr7 96263980 96264127 + 2 NA intron (NM_001160210, intron 3 of 17) L2c|LINE|L2 -44297 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 312-436 chr5 158849958 158850247 + 2 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 247854 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 305-298 chr2 239551069 239551244 + 2 NA Intergenic Intergenic 149408 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 177-90 chr2 241583486 241583612 + 2 NA TTS (NM_015963) TTS (NM_015963) -24406 NR_033346 100379249 Hs.621128 NR_033346 BOK-AS1 BOK-AS|BOKAS|NAToB|NCRNA00151 BOK antisense RNA 1 ncRNA 320-189 chr16 56151795 56152071 + 2 NA intron (NR_027078, intron 2 of 4) intron (NR_027078, intron 2 of 4) 39161 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 938-24 chr6 50651942 50652634 + 2 NA Intergenic Intergenic -61256 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 179-113 chr7 114050059 114050180 + 2 NA Intergenic MER21-int|LTR|ERVL -36208 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 262-196 chr2 28259478 28259628 + 2 NA intron (NM_199193, intron 11 of 13) L1ME1|LINE|L1 50906 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 191-170 chr5 60402746 60402841 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -30130 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 291-188 chr18 39008890 39009046 + 2 NA Intergenic Intergenic 613207 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 287-221 chr20 7801121 7801298 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 139249 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 442-36 chr10 111320815 111321193 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy 206713 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 280-415 chr8 99433415 99433636 + 2 NA intron (NM_017890, intron 22 of 61) L1MEg|LINE|L1 103205 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 317-94 chr11 114324713 114324972 + 2 NA Intergenic L1PREC2|LINE|L1 29029 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 710-78 chr5 56219610 56220173 + 2 NA intron (NM_024669, intron 2 of 11) intron (NM_024669, intron 2 of 11) 13439 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 763-17 chr14 58070510 58071159 + 2 NA intron (NM_001001872, intron 5 of 7) L1MA1|LINE|L1 81379 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 297-526 chrX 90010950 90011197 + 2 NA Intergenic L1MA6|LINE|L1 89165 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 240-258 chr20 19332996 19333164 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -48484 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 415-23 chr1 225082358 225082617 + 2 NA intron (NM_001367479, intron 19 of 85) intron (NM_001367479, intron 19 of 85) 152812 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 217-153 chr17 60741197 60741400 + 2 NA intron (NM_001330413, intron 5 of 25) L1MCa|LINE|L1 63447 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 193-19 chr1 200023194 200023339 + 2 NA Intergenic AluJr|SINE|Alu -4444 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 384-403 chr9 92839361 92839627 + 2 NA Intergenic Intergenic 29883 NR_026868 138649 Hs.643597 NM_001010925 ENSG00000187984 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 460-72 chr12 125991063 125991330 + 2 NA Intergenic L1ME4a|LINE|L1 -7822 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 229-37 chr10 75306335 75306485 + 2 NA intron (NR_038226, intron 2 of 3) L1MB3|LINE|L1 10027 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 351-469 chr8 31626905 31627176 + 2 NA Intergenic Intergenic -12712 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 286-251 chr20 54727757 54727942 + 2 NA Intergenic Intergenic 252256 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 348-278 chr22 39983876 39984117 + 2 NA Intergenic Intergenic -10958 NM_138435 113828 Hs.26192 NM_138435 ENSG00000133477 FAM83F - family with sequence similarity 83 member F protein-coding 375-115 chr13 94340857 94341140 + 2 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) 138684 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 453-249 chr7 34349562 34349948 + 2 NA non-coding (NR_033664, exon 5 of 5) non-coding (NR_033664, exon 5 of 5) -308463 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 228-182 chr2 179371175 179371332 + 2 NA Intergenic Intergenic -106421 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 824-20 chr2 102493788 102494458 + 2 NA intron (NM_001011552, intron 2 of 11) intron (NM_001011552, intron 2 of 11) 20897 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 938-17 chr21 24169780 24170497 + 2 NA Intergenic Intergenic 151239 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 414-356 chr9 105542923 105543253 + 2 NA intron (NM_001287191, intron 13 of 13) intron (NM_001287191, intron 13 of 13) -15042 NM_006731 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 273-172 chr17 65950075 65950222 + 2 NA intron (NM_001353129, intron 18 of 26) L1M4|LINE|L1 -123605 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 173-95 chr3 128192815 128192939 + 2 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) -38963 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 459-36 chr10 66874079 66874397 + 2 NA intron (NM_001127384, intron 7 of 17) LTR16B2|LTR|ERVL -51798 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 328-482 chr6 1165590 1165783 + 2 NA Intergenic L3|LINE|CR1 -64354 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 157-108 chr5 156842907 156843050 + 2 NA Intergenic L2|LINE|L2 -7317 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 988-21 chr3 72198761 72199545 + 2 NA Intergenic Intergenic 47896 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 298-418 chr7 14042129 14042368 + 2 NA Intergenic Intergenic -50823 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 183-174 chr9 122728210 122728369 + 2 NA Intergenic Intergenic 4299 NM_001005235 254973 Hs.626838 NM_001005235 ENSG00000136939 OR1L4 OR1L5|OR9-29|OR9-E|OST046 olfactory receptor family 1 subfamily L member 4 protein-coding 262-164 chr17 33449027 33449222 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 84636 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 209-140 chr19 36547042 36547201 + 2 NA exon (NM_001321351, exon 6 of 6) exon (NM_001321351, exon 6 of 6) -18850 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 259-238 chr21 25226059 25226229 + 2 NA Intergenic L1MB8|LINE|L1 205557 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 304-391 chr4 112880885 112881090 + 2 NA intron (NM_001354271, intron 1 of 42) intron (NM_001354271, intron 1 of 42) 20000 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 500-321 chr9 84882750 84883116 + 2 NA intron (NM_001018064, intron 13 of 17) AluSq2|SINE|Alu 177032 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 539-191 chr7 14646419 14646815 + 2 NA intron (NM_001350722, intron 13 of 25) L1MA5|LINE|L1 194833 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 309-266 chr2 135358413 135358584 + 2 NA intron (NM_001286569, intron 3 of 21) intron (NM_001286569, intron 3 of 21) 172087 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 548-208 chr7 28384843 28385226 + 2 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -27484 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 273-127 chr14 43061019 43061224 + 2 NA Intergenic Intergenic 1446162 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 112-39 chr5 120753385 120753484 + 2 NA Intergenic Intergenic 221970 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 311-467 chr7 31145035 31145299 + 2 NA Intergenic L1MA2|LINE|L1 92706 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 693-109 chr9 9768222 9768687 + 2 NA intron (NM_002839, intron 5 of 45) intron (NM_002839, intron 5 of 45) -30938 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 236-31 chr1 237495591 237495759 + 2 NA intron (NM_001035, intron 19 of 104) intron (NM_001035, intron 19 of 104) 24556 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 479-278 chr9 135916026 135916493 + 2 NA Intergenic L1MB3|LINE|L1 -8713 NM_015447 157922 Hs.522493 NM_015447 ENSG00000130559 CAMSAP1 - calmodulin regulated spectrin associated protein 1 protein-coding 329-432 chr4 185634431 185634736 + 2 NA intron (NM_001145670, intron 11 of 20) intron (NM_001145670, intron 11 of 20) 22163 NM_001145675 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 487-219 chr4 157807100 157807484 + 2 NA Intergenic Intergenic 234802 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 497-171 chr3 31124948 31125289 + 2 NA Intergenic Intergenic 36669 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 588-168 chr9 38285400 38285696 + 2 NA Intergenic L2a|LINE|L2 -107154 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 373-224 chr2 185491816 185492088 + 2 NA Intergenic Intergenic 246767 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 288-463 chr8 138437638 138437820 + 2 NA intron (NM_001362965, intron 1 of 19) MIRb|SINE|MIR 59532 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 250-275 chr3 67191337 67191485 + 2 NA Intergenic Intergenic -34053 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 339-197 chr16 62912768 62913079 + 2 NA Intergenic L1ME3|LINE|L1 -876485 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 242-38 chr10 59101750 59101941 + 2 NA Intergenic MER21A|LTR|ERVL 74619 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 362-188 chr17 33816348 33816599 + 2 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR -282713 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 223-63 chr12 28592695 28592893 + 2 NA Intergenic L1M4c|LINE|L1 -402056 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 428-259 chr6 128561738 128562109 + 2 NA Intergenic Intergenic -41324 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 263-69 chr11 27854424 27854659 + 2 NA Intergenic MIR|SINE|MIR -132511 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 432-110 chr18 71881800 71882129 + 2 NA Intergenic Intergenic -99738 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 311-54 chr10 64658742 64658980 + 2 NA Intergenic Intergenic -166667 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 156-34 chr15 25124788 25124900 + 2 NA intron (NR_146177, intron 61 of 147) L1MC4a|LINE|L1 8299 NR_023915 3653 Hs.555970 NR_023915 IPW NCRNA00002 imprinted in Prader-Willi syndrome ncRNA 322-352 chr3 147532760 147532945 + 2 NA Intergenic Intergenic 111525 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 237-91 chr13 75849609 75849822 + 2 NA intron (NM_005358, intron 26 of 29) intron (NM_005358, intron 26 of 29) -21323 NM_001257995 729420 Hs.586820 NM_001257995 LMO7DN C13orf45 LMO7 downstream neighbor protein-coding 429-168 chr2 202670618 202670933 + 2 NA intron (NM_173511, intron 1 of 7) intron (NM_173511, intron 1 of 7) 35806 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 374-40 chr10 98813952 98814297 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 110444 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 597-62 chr18 13153446 13153977 + 2 NA Intergenic L1MA4|LINE|L1 -65049 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 257-404 chr8 36614529 36614777 + 2 NA Intergenic L3|LINE|CR1 -169721 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 475-91 chr16 3994762 3995127 + 2 NA intron (NM_001116, intron 3 of 10) intron (NM_001116, intron 3 of 10) -44500 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 181-161 chr8 102343035 102343209 + 2 NA intron (NM_001282873, intron 8 of 58) intron (NM_001282873, intron 8 of 58) 69567 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 676-93 chr4 186594698 186595251 + 2 NA intron (NM_005245, intron 26 of 26) intron (NM_005245, intron 26 of 26) -39407 NM_005958 4543 Hs.243467 NM_005958 ENSG00000168412 MTNR1A MEL-1A-R|MT1 melatonin receptor 1A protein-coding 361-384 chr6 12586114 12586441 + 2 NA promoter-TSS (NR_149140) promoter-TSS (NR_149140) -873 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 324-430 chr5 72521707 72521955 + 2 NA Intergenic Intergenic -14421 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 283-151 chr15 87553460 87553727 + 2 NA Intergenic L1MB7|LINE|L1 -23336 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 394-122 chr16 35379868 35380198 + 2 NA non-coding (NR_027080, exon 4 of 7) non-coding (NR_027080, exon 4 of 7) 16502 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 302-283 chr3 51761392 51761552 + 2 NA Intergenic MER57F|LTR|ERV1 17765 NM_001143833 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 471-97 chr16 53719768 53720202 + 2 NA intron (NM_001363897, intron 1 of 7) L2c|LINE|L2 15829 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 246-347 chr6 44517757 44517955 + 2 NA Intergenic L1MA4A|LINE|L1 34025 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 351-198 chr19 43915450 43915628 + 2 NA intron (NM_003425, intron 9 of 9) MER1B|DNA|hAT-Charlie -13736 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 314-115 chr12 5522399 5522635 + 2 NA Intergenic Intergenic 28385 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 274-65 chr11 27547987 27548177 + 2 NA intron (NR_033315, intron 2 of 6) Penelope1_Vert|LINE|Penelope -33035 NR_107054 102465881 NR_107054 ENSG00000278483 MIR8087 hsa-mir-8087 microRNA 8087 ncRNA 471-188 chr4 46459627 46459884 + 2 NA Intergenic L1MA4|LINE|L1 -69627 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 493-316 chr9 93918884 93919200 + 2 NA Intergenic Intergenic 36313 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 182-76 chr18 37757638 37757810 + 2 NA Intergenic Intergenic 100589 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 232-373 chr8 87724122 87724287 + 2 NA Intergenic L1PA16|LINE|L1 149811 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 585-56 chr17 52764658 52765159 + 2 NA Intergenic AluSx1|SINE|Alu -97213 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 523-199 chr4 67958427 67958835 + 2 NA intron (NM_001114387, intron 1 of 9) THE1B-int|LTR|ERVL-MaLR 4862 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 424-172 chr3 59689167 59689539 + 2 NA Intergenic Intergenic -30856 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 394-77 chr12 25675170 25675512 + 2 NA Intergenic Intergenic -26763 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 239-390 chr8 13466206 13466399 + 2 NA intron (NM_024767, intron 2 of 4) MER54A|LTR|ERVL 48549 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 941-18 chr2 239886643 239887408 + 2 NA Intergenic L1MB7|LINE|L1 56069 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 288-182 chr2 54370313 54370497 + 2 NA Intergenic Intergenic 39521 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 217-299 chr5 81339630 81339837 + 2 NA intron (NM_130767, intron 11 of 14) intron (NM_130767, intron 11 of 14) 38146 NM_001131035 84240 Hs.15536 NM_032280 ENSG00000131732 ZCCHC9 PPP1R41 zinc finger CCHC-type containing 9 protein-coding 281-73 chr11 106578939 106579154 + 2 NA Intergenic LTR108d_Mam|LTR|ERVL 327639 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 455-290 chr8 138998133 138998537 + 2 NA Intergenic L1MB8|LINE|L1 -84294 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 467-301 chr9 130789844 130790236 + 2 NA intron (NM_007313, intron 1 of 10) MER115|DNA|hAT-Tip100 -45214 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 579-32 chr13 112739727 112740096 + 2 NA intron (NM_032189, intron 1 of 28) L1MB7|LINE|L1 14820 NR_046661 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 191-118 chr2 237313757 237313857 + 2 NA Intergenic Intergenic 100357 NM_057166 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 280-121 chr14 57661188 57661433 + 2 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -167453 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 505-156 chr2 104018129 104018476 + 2 NA Intergenic Intergenic 390030 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 418-105 chr19 53312467 53312780 + 2 NA Intergenic Intergenic -21096 NM_001321524 91664 Hs.720672 NM_138374 ENSG00000213799 ZNF845 - zinc finger protein 845 protein-coding 212-174 chr2 161137949 161138113 + 2 NA intron (NM_004180, intron 1 of 7) intron (NM_004180, intron 1 of 7) 1068 NM_004180 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 503-12 chr1 87622725 87623203 + 2 NA Intergenic AluSp|SINE|Alu -251309 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 253-420 chr8 130089008 130089162 + 2 NA intron (NM_001362925, intron 25 of 29) L2c|LINE|L2 -4317 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 115-42 chr6 65429860 65429940 + 2 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 128482 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 260-49 chr10 53631943 53632131 + 2 NA Intergenic L1MC2|LINE|L1 -854193 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 176-25 chr14 46504805 46504909 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 33498 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 537-68 chr14 60390165 60390580 + 2 NA Intergenic L1MD1|LINE|L1 67176 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 309-240 chr2 33263072 33263298 + 2 NA intron (NM_206943, intron 14 of 33) intron (NM_206943, intron 14 of 33) 128588 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 314-429 chr4 68073492 68073773 + 2 NA TTS (NR_046116) TTS (NR_046116) -10335 NR_027094 401135 Hs.130270 NM_001014372 SYT14P1 CHR415SYT|SYT14L|SYTDEP synaptotagmin 14 pseudogene 1 pseudo 401-19 chr1 237215017 237215342 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 172995 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 537-267 chr8 135804944 135805331 + 2 NA Intergenic L2c|LINE|L2 347681 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 198-242 chr8 68684382 68684532 + 2 NA intron (NR_146187, intron 8 of 13) intron (NR_146187, intron 8 of 13) -352966 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 355-368 chr4 61734347 61734612 + 2 NA intron (NM_001371343, intron 8 of 23) THE1C|LTR|ERVL-MaLR 427286 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 284-428 chr8 138387183 138387335 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 110002 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 464-249 chr8 37381875 37382178 + 2 NA Intergenic Intergenic 111887 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 267-348 chr5 136324251 136324431 + 2 NA intron (NM_020389, intron 2 of 11) intron (NM_020389, intron 2 of 11) -22485 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 539-88 chr16 78004195 78004692 + 2 NA Intergenic L2a|LINE|L2 -18105 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 302-331 chr4 89320114 89320378 + 2 NA Intergenic Intergenic -12446 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 307-205 chr18 67394840 67395065 + 2 NA Intergenic L1MB1|LINE|L1 -121594 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 220-313 chr6 40963012 40963198 + 2 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 60175 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 795-21 chr15 97146018 97146553 + 2 NA Intergenic Intergenic 362850 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 347-410 chr5 121883660 121884003 + 2 NA Intergenic LTR40b|LTR|ERVL 31949 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 524-78 chr16 54141033 54141382 + 2 NA Intergenic Intergenic 101814 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 309-69 chr10 131503506 131503720 + 2 NA Intergenic L1MEi|LINE|L1 -191892 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 398-118 chr15 63024135 63024374 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -18493 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 250-450 chr9 2976641 2976829 + 2 NA Intergenic L1MB3|LINE|L1 -132640 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 350-116 chr13 38666860 38667144 + 2 NA intron (NR_126377, intron 2 of 2) THE1B|LTR|ERVL-MaLR 19673 NR_126377 101929121 Hs.618449 NR_126377 LINC00437 TCONS_00021639 long intergenic non-protein coding RNA 437 ncRNA 378-208 chr19 56471421 56471738 + 2 NA intron (NM_022103, intron 1 of 4) intron (NM_022103, intron 1 of 4) 5766 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 349-464 chr6 149841663 149841956 + 2 NA intron (NM_032832, intron 3 of 6) AluSq|SINE|Alu -21689 NR_045126 100652739 Hs.642734 NR_045126 ENSG00000223701 RAET1E-AS1 RAET1G-AS1 RAET1E antisense RNA 1 ncRNA 239-60 chr11 79326758 79326961 + 2 NA intron (NM_001098816, intron 1 of 33) L2c|LINE|L2 75250 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 330-310 chr2 225974955 225975161 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -167736 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 250-45 chr10 64945121 64945302 + 2 NA Intergenic L1PA17|LINE|L1 -20693 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 213-118 chr17 80677590 80677790 + 2 NA intron (NM_020761, intron 3 of 33) L2c|LINE|L2 127942 NR_110852 101928855 Hs.670692 NR_110852 ENSG00000262833 LOC101928855 - uncharacterized LOC101928855 ncRNA 374-305 chr5 30782876 30783220 + 2 NA Intergenic AluJo|SINE|Alu -410638 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 207-8 chr1 65787995 65788178 + 2 NA Intergenic L1M7|LINE|L1 -4424 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 307-17 chr1 113532707 113532889 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 142283 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 481-288 chr8 41811773 41812123 + 2 NA intron (NM_001142446, intron 1 of 42) intron (NM_001142446, intron 1 of 42) -14326 NM_020477 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 262-87 chr11 106417727 106417947 + 2 NA Intergenic L2a|LINE|L2 166430 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 321-9 chr1 49517704 49517869 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -45701 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 258-23 chr1 194379472 194379642 + 2 NA Intergenic MLT2B1|LTR|ERVL 1074812 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 366-417 chr7 94852417 94852680 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -55046 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 396-216 chr3 52962424 52962769 + 2 NA intron (NM_016329, intron 2 of 20) AluSx|SINE|Alu -65048 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 420-27 chr1 233889435 233889779 + 2 NA Intergenic MER94B|DNA|hAT-Blackjack -15069 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 199-196 chr5 26366115 26366244 + 2 NA Intergenic L1MA4A|LINE|L1 672407 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 357-145 chr16 60192634 60192869 + 2 NA Intergenic Intergenic 167042 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 327-454 chr7 38707388 38707699 + 2 NA Intergenic L1MB3|LINE|L1 -20454 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 247-384 chr7 71314795 71314984 + 2 NA intron (NM_022479, intron 1 of 10) AluJr|SINE|Alu -7119 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 292-411 chr7 53988553 53988785 + 2 NA Intergenic Intergenic -176738 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 308-159 chr15 60683855 60684031 + 2 NA intron (NR_120318, intron 2 of 2) intron (NR_120318, intron 2 of 2) 2374 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 381-213 chr2 157170209 157170426 + 2 NA Intergenic L3|LINE|CR1 -87388 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 287-361 chr6 115397859 115398026 + 2 NA Intergenic L1MC5a|LINE|L1 245893 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 299-39 chr10 14494231 14494398 + 2 NA Intergenic L1MA9|LINE|L1 38400 NM_001320741 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 457-99 chr19 9344019 9344296 + 2 NA TTS (NM_032497) TTS (NM_032497) -18856 NM_003451 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 479-133 chr3 49234822 49235168 + 2 NA intron (NM_001135197, intron 2 of 7) AluSg|SINE|Alu 35497 NM_001135197 339834 Hs.631931 NM_178173 ENSG00000173421 CCDC36 CT74 coiled-coil domain containing 36 protein-coding 634-139 chr7 6685952 6686475 + 2 NA Intergenic AluY|SINE|Alu 20734 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 239-333 chr5 145563122 145563298 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 272132 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 561-80 chr17 69034689 69035121 + 2 NA intron (NM_080283, intron 8 of 38) intron (NM_080283, intron 8 of 38) 26022 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 146-79 chr6 72356751 72356877 + 2 NA intron (NM_001350433, intron 21 of 25) intron (NM_001350433, intron 21 of 25) -9932 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 576-121 chr4 89415332 89415815 + 2 NA Intergenic Intergenic -107773 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 1208-5 chr14 72393597 72394281 + 2 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -122881 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 546-244 chr8 122118977 122119365 + 2 NA Intergenic L1PB4|LINE|L1 449473 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 370-282 chr21 27898335 27898520 + 2 NA Intergenic L1MA4|LINE|L1 -114936 NR_027246 246705 Hs.505079 NM_145180 ENSG00000178457 LINC00314 C21orf94|NCRNA00314 long intergenic non-protein coding RNA 314 ncRNA 470-157 chr20 40898245 40898568 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -82307 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 364-350 chr5 68914737 68914974 + 2 NA Intergenic Intergenic 115072 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 451-113 chr2 67762870 67763266 + 2 NA Intergenic Intergenic 62494 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 370-289 chr21 44629831 44630125 + 2 NA intron (NM_144991, intron 1 of 11) intron (NM_144991, intron 1 of 11) 2885 NM_198690 386676 Hs.474000 NM_198690 ENSG00000221837 KRTAP10-9 KAP10.9|KAP18.9|KRTAP18-9 keratin associated protein 10-9 protein-coding 366-92 chr12 9150516 9150705 + 2 NA intron (NM_002864, intron 34 of 35) intron (NM_002864, intron 34 of 35) -34381 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 211-23 chr10 10453143 10453322 + 2 NA intron (NR_120637, intron 1 of 3) intron (NR_120637, intron 1 of 3) 9117 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 308-207 chr19 33725118 33725333 + 2 NA intron (NM_001127895, intron 3 of 4) intron (NM_001127895, intron 3 of 4) 40697 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 222-374 chr8 117801689 117801869 + 2 NA intron (NM_000127, intron 10 of 10) AluSz6|SINE|Alu 119134 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 400-191 chr20 36060378 36060741 + 2 NA Intergenic L1MC3|LINE|L1 -9599 NR_027451 647979 Hs.743232 NR_027451 ENSG00000260032 NORAD LINC00657 non-coding RNA activated by DNA damage ncRNA 444-106 chr18 71229341 71229598 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 349487 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 265-262 chr4 45937485 45937743 + 2 NA Intergenic Intergenic 186440 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 406-94 chr15 26668337 26668657 + 2 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) -39407 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 330-92 chr11 59693905 59694117 + 2 NA Intergenic L1M3de|LINE|L1 19834 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor family 10 subfamily V member 1 protein-coding 291-235 chr2 149867036 149867288 + 2 NA Intergenic L1MD2|LINE|L1 -7971 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 266-110 chr14 46447346 46447538 + 2 NA intron (NR_102701, intron 4 of 5) intron (NR_102701, intron 4 of 5) -23917 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 475-123 chr2 29570258 29570671 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -95087 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 455-85 chr15 97814459 97814829 + 2 NA intron (NR_024172, intron 1 of 2) MLT2F|LTR|ERVL 59785 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 365-222 chr2 212251559 212251762 + 2 NA intron (NM_001042599, intron 1 of 26) L2a|LINE|L2 174700 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 592-70 chr18 40057748 40058166 + 2 NA Intergenic MER41A|LTR|ERV1 -8329 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 263-387 chr7 29385013 29385192 + 2 NA intron (NM_001293072, intron 3 of 12) intron (NM_001293072, intron 3 of 12) -94610 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 234-329 chr5 171432690 171432866 + 2 NA intron (NM_003862, intron 2 of 4) intron (NM_003862, intron 2 of 4) 13131 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 247-381 chr7 50935492 50935624 + 2 NA Intergenic L1M4a1|LINE|L1 -142105 NM_001371008 169-133 chr8 61188438 61188578 + 2 NA Intergenic Intergenic -99462 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 216-27 chr1 206136842 206137000 + 2 NA Intergenic Intergenic -19533 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 436-152 chr2 221232470 221232793 + 2 NA Intergenic MIRb|SINE|MIR 339673 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 223-59 chr12 5321677 5321867 + 2 NA Intergenic L1MA5|LINE|L1 -78621 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 333-578 chr8 104582478 104582719 + 2 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 6426 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 633-123 chr8 143854048 143854639 + 2 NA Intergenic L1MEf|LINE|L1 -13370 NM_178564 340371 Hs.521926 NM_178564 ENSG00000185189 NRBP2 TRG16|pp9320 nuclear receptor binding protein 2 protein-coding 220-348 chr7 86744071 86744228 + 2 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 100235 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 326-324 chr3 13722386 13722669 + 2 NA intron (NR_027103, intron 4 of 5) L1M4b|LINE|L1 71806 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 311-168 chr15 100282852 100283029 + 2 NA intron (NM_139057, intron 3 of 21) L1ME4a|LINE|L1 59035 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 337-429 chr5 11670532 11670784 + 2 NA intron (NM_001288717, intron 2 of 20) L1PA7|LINE|L1 -81592 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 818-59 chr7 110153193 110153831 + 2 NA Intergenic Intergenic -193299 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 389-150 chr19 34695024 34695249 + 2 NA Intergenic L1MA4A|LINE|L1 17458 NM_001289189 55900 Hs.436350 NM_018443 ENSG00000089335 ZNF302 HSD16|MST154|MSTP154|ZNF135L|ZNF140L|ZNF327 zinc finger protein 302 protein-coding 699-81 chr5 41609666 41610240 + 2 NA Intergenic Intergenic -99352 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 315-316 chr3 156883869 156884074 + 2 NA intron (NM_001004316, intron 3 of 12) L1PB1|LINE|L1 57618 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 307-378 chr5 26495967 26496142 + 2 NA Intergenic Intergenic 542532 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 376-292 chr4 100235492 100235737 + 2 NA Intergenic PRIMA4-int|LTR|ERV1 -45146 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 272-109 chr14 38372160 38372346 + 2 NA Intergenic Intergenic -116160 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 267-173 chr2 33107317 33107547 + 2 NA intron (NM_206943, intron 3 of 33) MamRep38|DNA|hAT -27165 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 579-142 chr6 91305385 91305806 + 2 NA Intergenic Intergenic -216065 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 365-21 chr1 153334623 153334815 + 2 NA intron (NM_020393, intron 8 of 8) L1PB4|LINE|L1 14122 NM_020393 57115 Hs.58356 NM_020393 ENSG00000163218 PGLYRP4 PGLYRPIbeta|PGRP-Ibeta|PGRPIB|SBBI67 peptidoglycan recognition protein 4 protein-coding 336-280 chr2 113974213 113974477 + 2 NA intron (NR_148507, intron 2 of 2) intron (NR_148507, intron 2 of 2) 5023 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 684-53 chr2 37917371 37917919 + 2 NA Intergenic MER41B|LTR|ERV1 -7642 NM_001322212 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 311-111 chr12 118469006 118469287 + 2 NA Intergenic Intergenic 92591 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 231-379 chr9 74019418 74019608 + 2 NA Intergenic L1MA3|LINE|L1 -352018 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 478-153 chr2 189979118 189979438 + 2 NA Intergenic L1PB4|LINE|L1 83451 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 311-474 chr7 67757734 67758040 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -262366 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 512-108 chr18 77368569 77369026 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 118949 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 288-38 chr1 247052704 247052875 + 2 NA intron (NM_033213, intron 1 of 3) L1PBa|LINE|L1 26022 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 325-219 chr17 50457339 50457650 + 2 NA intron (NM_001288968, intron 2 of 16) intron (NM_001288968, intron 2 of 16) -10835 NR_110232 80221 Hs.288959 NM_025149 ENSG00000167107 ACSF2 ACSMW|AVYV493 acyl-CoA synthetase family member 2 protein-coding 402-365 chr9 32806022 32806242 + 2 NA Intergenic AluJr|SINE|Alu 22592 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 418-93 chr17 40455186 40455445 + 2 NA intron (NM_001552, intron 3 of 3) L1MC2|LINE|L1 11865 NM_001552 3487 Hs.462998 NM_001552 ENSG00000141753 IGFBP4 BP-4|HT29-IGFBP|IBP4|IGFBP-4 insulin like growth factor binding protein 4 protein-coding 238-19 chr1 175928588 175928727 + 2 NA Intergenic LTR49-int|LTR|ERV1 39822 NR_162097 113839518 NR_162097 MIR1843 - microRNA 1843 ncRNA 246-432 chr9 76543842 76544084 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 43330 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 389-228 chr3 68411014 68411271 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -89495 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 296-216 chr2 44425168 44425369 + 2 NA intron (NM_024766, intron 3 of 10) Mam_R4|LINE|Dong-R4 63321 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 672-22 chr12 128875215 128875613 + 2 NA intron (NM_001366887, intron 1 of 10) intron (NM_001366887, intron 1 of 10) 21936 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 259-128 chr14 99123640 99123870 + 2 NA Intergenic Intergenic 148442 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 517-112 chr18 67925680 67926125 + 2 NA Intergenic Intergenic -111080 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 318-574 chr9 81459432 81459702 + 2 NA Intergenic Intergenic 229968 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 314-206 chr16 48806218 48806521 + 2 NA Intergenic L1MCa|LINE|L1 -196189 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 251-274 chr4 120657180 120657386 + 2 NA Intergenic Intergenic 265583 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 626-79 chr2 229472193 229472559 + 2 NA intron (NM_139072, intron 7 of 12) intron (NM_139072, intron 7 of 12) -201089 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 487-206 chr4 60966110 60966502 + 2 NA Intergenic Intergenic 43687 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 282-373 chr5 45534858 45535033 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 161435 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 401-147 chr19 48006100 48006422 + 2 NA intron (NM_022142, intron 1 of 6) MIR|SINE|MIR 11629 NM_022142 64100 Hs.104894 NM_022142 ENSG00000169393 ELSPBP1 E12|EDDM12|EL149|HE12 epididymal sperm binding protein 1 protein-coding 298-416 chr6 164191888 164192161 + 2 NA Intergenic Intergenic -520540 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 575-144 chr5 22387008 22387519 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -173413 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 354-512 chrX 99790286 99790589 + 2 NA Intergenic L1PA16|LINE|L1 619836 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 219-158 chr19 56582191 56582372 + 2 NA 3' UTR (NM_001001668, exon 6 of 6) 3' UTR (NM_001001668, exon 6 of 6) -13015 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 344-178 chr16 78488286 78488517 + 2 NA intron (NM_001291997, intron 7 of 7) MER91C|DNA|hAT-Tip100 388747 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 278-351 chr5 125836994 125837224 + 2 NA Intergenic Intergenic -342468 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 360-450 chr8 25643535 25643853 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 184461 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 432-127 chr2 74729198 74729571 + 2 NA Intergenic L1MA4|LINE|L1 75137 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 189-165 chr5 110062115 110062298 + 2 NA Intergenic Intergenic 179024 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 413-187 chr3 60197310 60197653 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -116572 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 488-77 chr14 49268548 49268878 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 317667 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 422-9 chr1 73281855 73282167 + 2 NA Intergenic L1MC1|LINE|L1 -24159 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 853-13 chr18 7433637 7434233 + 2 NA Intergenic MER58C|DNA|hAT-Charlie 27071 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 293-98 chr13 22552942 22553149 + 2 NA Intergenic LTR12D|LTR|ERV1 342760 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 264-277 chr3 95644785 95644943 + 2 NA Intergenic Intergenic 38329 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 585-150 chr7 35271032 35271525 + 2 NA Intergenic Intergenic -17178 NM_001077653 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 284-73 chr11 74044347 74044516 + 2 NA intron (NM_001286577, intron 28 of 32) AluSc|SINE|Alu -35194 NM_022803 7352 Hs.101337 NM_003356 ENSG00000175564 UCP3 SLC25A9 uncoupling protein 3 protein-coding 307-331 chr4 24737333 24737538 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -58138 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 194-23 chr10 90293038 90293177 + 2 NA Intergenic Intergenic 247698 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 405-109 chr17 34556217 34556580 + 2 NA Intergenic Intergenic 22971 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 203-185 chr5 108283402 108283549 + 2 NA intron (NM_001163315, intron 4 of 8) L1PB4|LINE|L1 98623 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 189-40 chr12 55160506 55160627 + 2 NA Intergenic Intergenic 30797 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 379-109 chr15 93650229 93650550 + 2 NA Intergenic Intergenic -206171 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 321-143 chr12 115104580 115104870 + 2 NA Intergenic Intergenic -420550 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 386-392 chrX 149341570 149341856 + 2 NA Intergenic LTR90B|LTR|LTR 163593 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 135-22 chr14 82525167 82525240 + 2 NA Intergenic Intergenic -117429 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 579-61 chr19 34819345 34819734 + 2 NA intron (NR_033982, intron 4 of 5) intron (NR_033982, intron 4 of 5) 13330 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 302-338 chr4 172157690 172157865 + 2 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -344170 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 431-215 chr4 184046426 184046774 + 2 NA Intergenic L1MC4|LINE|L1 141293 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 175-3 chr1 66115431 66115590 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -64792 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 228-21 chr1 169124068 169124224 + 2 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 17456 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 416-234 chr3 154815005 154815393 + 2 NA Intergenic L1MA7|LINE|L1 -208925 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 330-315 chr20 8286597 8286878 + 2 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 38033 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 372-238 chr2 83049096 83049312 + 2 NA Intergenic L1M6|LINE|L1 192401 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 185-44 chr12 15328657 15328827 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 6234 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 399-58 chr11 60274504 60274856 + 2 NA Intergenic Intergenic -5986 NM_001243266 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 257-211 chr2 145709520 145709735 + 2 NA Intergenic L1MA9|LINE|L1 -877430 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 243-237 chr2 154134101 154134283 + 2 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 189798 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 693-107 chr8 142055960 142056475 + 2 NA Intergenic Intergenic -120122 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 267-8 chr1 63577190 63577408 + 2 NA Intergenic Tigger8|DNA|TcMar-Tigger -16112 NM_002633 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 546-28 chr10 113692770 113693302 + 2 NA intron (NM_033338, intron 2 of 7) L1PBb|LINE|L1 13124 NM_033339 840 Hs.9216 NM_001227 ENSG00000165806 CASP7 CASP-7|CMH-1|ICE-LAP3|LICE2|MCH3 caspase 7 protein-coding 346-4 chr1 35734082 35734322 + 2 NA 3' UTR (NM_022111, exon 25 of 25) 3' UTR (NM_022111, exon 25 of 25) -15318 NM_152374 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 423-2 chr1 35547334 35547693 + 2 NA intron (NM_024874, intron 2 of 20) L1MB7|LINE|L1 9890 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 322-8 chr1 59417834 59418058 + 2 NA intron (NM_001350794, intron 5 of 14) MER3|DNA|hAT-Charlie -97684 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 293-291 chr4 30750451 30750664 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 30188 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 119-5 chr1 170420977 170421046 + 2 NA Intergenic Intergenic -111111 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 384-313 chr6 37597367 37597599 + 2 NA Intergenic Intergenic -42061 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 119-37 chr2 221700689 221700780 + 2 NA Intergenic Intergenic -126532 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 325-451 chr5 89671915 89672110 + 2 NA Intergenic Intergenic 344708 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 527-10 chr1 172209089 172209440 + 2 NA intron (NR_146559, intron 15 of 20) MLT1B|LTR|ERVL-MaLR -64429 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 407-354 chrX 62730490 62730830 + 2 NA Intergenic ALR/Alpha|Satellite|centr 620672 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 244-107 chr15 27536217 27536408 + 2 NA 3' UTR (NM_033223, exon 10 of 10) 3' UTR (NM_033223, exon 10 of 10) -374993 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 249-151 chr17 48539962 48540184 + 2 NA Intergenic Intergenic -4278 NR_102279 100874362 Hs.171806 NR_102279 ENSG00000230148 HOXB-AS1 HOXB3OS HOXB cluster antisense RNA 1 ncRNA 379-190 chr20 41843671 41844000 + 2 NA Intergenic L1MA4A|LINE|L1 -225458 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 853-41 chr7 135522817 135523385 + 2 NA Intergenic Intergenic -12974 NM_001008225 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 262-297 chr3 190548053 190548301 + 2 NA intron (NM_001364879, intron 1 of 10) intron (NM_001364879, intron 1 of 10) 34092 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 426-211 chr4 128321209 128321513 + 2 NA Intergenic Intergenic -33548 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 131-42 chr2 190169555 190169635 + 2 NA intron (NM_001042521, intron 2 of 2) L4_C_Mam|LINE|RTE-X -11268 NM_001042519 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 217-124 chr15 33506128 33506308 + 2 NA intron (NM_001243996, intron 3 of 102) intron (NM_001243996, intron 3 of 102) 195251 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 338-304 chr20 63387090 63387269 + 2 NA Intergenic L1MCc|LINE|L1 -25783 NM_000744 1137 Hs.10734 NM_000744 ENSG00000101204 CHRNA4 BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding 317-107 chr12 32103045 32103226 + 2 NA Intergenic MIR|SINE|MIR -3672 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 313-522 chr8 71625933 71626136 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -77940 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 524-18 chr1 209192394 209192789 + 2 NA Intergenic Intergenic -132865 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 300-215 chr2 146967322 146967520 + 2 NA Intergenic ORSL|DNA|hAT-Tip100 380364 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 357-167 chr18 29502845 29503037 + 2 NA Intergenic Intergenic -795969 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 493-77 chr14 30827044 30827486 + 2 NA Intergenic L1MC4|LINE|L1 -47270 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 256-420 chr8 82285841 82286059 + 2 NA Intergenic Intergenic -443664 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 273-306 chr3 163978038 163978208 + 2 NA Intergenic Intergenic 193433 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 467-18 chr1 227285109 227285429 + 2 NA intron (NM_001366019, intron 1 of 36) MER5A|DNA|hAT-Charlie 33223 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 596-128 chr4 100945277 100945833 + 2 NA Intergenic L1ME3|LINE|L1 -270442 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 531-245 chr8 124114367 124114847 + 2 NA intron (NM_001039112, intron 39 of 40) intron (NM_001039112, intron 39 of 40) 56915 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 317-13 chr1 69878523 69878790 + 2 NA intron (NM_001370785, intron 7 of 26) intron (NM_001370785, intron 7 of 26) -40666 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 264-193 chr2 27688513 27688714 + 2 NA intron (NM_018158, intron 11 of 13) intron (NM_018158, intron 11 of 13) -24773 NM_001282732 9913 Hs.6232 NM_014860 ENSG00000119760 SUPT7L SPT7L|STAF65|STAF65(gamma)|STAF65G|SUPT7H SPT7 like, STAGA complex gamma subunit protein-coding 657-55 chr2 157957064 157957503 + 2 NA Intergenic AluJr4|SINE|Alu -37896 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 350-535 chr8 121343146 121343435 + 2 NA Intergenic Intergenic -296056 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 341-383 chr4 82055638 82055963 + 2 NA Intergenic Intergenic 318191 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 350-534 chr8 121099963 121100242 + 2 NA Intergenic MIR|SINE|MIR -288056 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 346-469 chr7 71474136 71474324 + 2 NA intron (NM_022479, intron 5 of 10) MER41B|LTR|ERV1 -166460 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 426-181 chr3 68776909 68777171 + 2 NA intron (NM_001005527, intron 3 of 5) L1MEc|LINE|L1 155507 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 210-233 chr5 129813219 129813347 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 65189 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 603-119 chr4 58355818 58356283 + 2 NA Intergenic Intergenic 180278 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 546-46 chr12 3155250 3155720 + 2 NA intron (NM_006675, intron 2 of 8) AluJr|SINE|Alu 78106 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 520-97 chr14 88468386 88468792 + 2 NA intron (NM_007039, intron 18 of 18) intron (NM_007039, intron 18 of 18) 82932 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 315-111 chr12 115214689 115214867 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -530603 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 400-106 chr15 39065006 39065315 + 2 NA Intergenic Intergenic -185509 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 591-16 chr10 98599840 98600228 + 2 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -153071 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 455-119 chr2 32372160 32372598 + 2 NA intron (NM_016252, intron 1 of 73) L1ME1|LINE|L1 15351 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 376-316 chr5 33473652 33473864 + 2 NA Intergenic MER4D1|LTR|ERV1 32982 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 319-106 chr12 18345721 18345887 + 2 NA intron (NM_001288774, intron 10 of 32) intron (NM_001288774, intron 10 of 32) 84264 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 616-96 chr20 38317040 38317516 + 2 NA intron (NM_001725, intron 5 of 14) MLT1G|LTR|ERVL-MaLR 13128 NM_001725 671 Hs.529019 NM_001725 ENSG00000101425 BPI BPIFD1|rBPI bactericidal permeability increasing protein protein-coding 507-23 chr1 236911470 236911809 + 2 NA Intergenic L1MA4A|LINE|L1 92802 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 510-271 chr8 31562169 31562611 + 2 NA Intergenic L1PA16|LINE|L1 -77362 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 389-343 chr7 51436197 51436541 + 2 NA Intergenic Intergenic -43113 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 369-453 chrX 67669624 67669812 + 2 NA intron (NM_001011645, intron 3 of 8) L1MA3|LINE|L1 125095 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 361-347 chr5 9732514 9732714 + 2 NA intron (NR_027112, intron 5 of 12) L2a|LINE|L2 -102263 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 269-250 chr3 57122186 57122365 + 2 NA intron (NM_001318864, intron 2 of 13) intron (NM_001318864, intron 2 of 13) -43007 NM_001128615 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 232-31 chr10 57087610 57087789 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 216860 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 550-175 chr5 5250493 5250960 + 2 NA intron (NM_139056, intron 17 of 22) (TG)n|Simple_repeat|Simple_repeat 110396 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 516-173 chr3 68510331 68510738 + 2 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) 9897 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 326-315 chr22 30978103 30978313 + 2 NA non-coding (NR_152867, exon 4 of 4) non-coding (NR_152867, exon 4 of 4) 8997 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 600-103 chr5 122138274 122138670 + 2 NA intron (NM_207317, intron 1 of 1) intron (NM_207317, intron 1 of 1) 8926 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 360-8 chr1 81448818 81449145 + 2 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) 108721 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 626-2 chr1 36970803 36971151 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 63538 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 294-318 chr4 17992710 17992903 + 2 NA intron (NR_158566, intron 1 of 5) intron (NR_158566, intron 1 of 5) 28949 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 335-205 chr18 4736103 4736298 + 2 NA Intergenic L2a|LINE|L2 -280893 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 254-246 chr3 83144166 83144378 + 2 NA Intergenic Intergenic 1158130 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 476-22 chr10 16455435 16455734 + 2 NA intron (NM_001261837, intron 2 of 4) AluJo|SINE|Alu 18641 NM_001261838 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 460-222 chr4 66470195 66470547 + 2 NA Intergenic L1P4|LINE|L1 193547 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 304-566 chrX 58404931 58405130 + 2 NA Intergenic ALR/Alpha|Satellite|centr -494397 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 438-31 chr10 59612597 59612951 + 2 NA Intergenic Intergenic 97117 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 351-481 chr8 73138798 73139033 + 2 NA Intergenic MIR|SINE|MIR -45743 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 340-212 chr18 28474925 28475262 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -297963 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 255-93 chr13 64065444 64065621 + 2 NA intron (NR_145420, intron 1 of 5) intron (NR_145420, intron 1 of 5) 10479 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 539-172 chr5 150856099 150856474 + 2 NA intron (NM_001346557, intron 2 of 3) AluSc|SINE|Alu 9763 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 317-309 chr3 88696749 88696909 + 2 NA Intergenic HAL1M8|LINE|L1 358373 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 370-227 chr2 51558654 51558991 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 526221 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 229-351 chr7 22945050 22945257 + 2 NA 3' UTR (NM_001363466, exon 12 of 12) 3' UTR (NM_001363466, exon 12 of 12) 68977 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 366-310 chr4 59147458 59147731 + 2 NA Intergenic MIRb|SINE|MIR 134021 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 643-126 chr8 78952884 78953451 + 2 NA Intergenic L1MA4|LINE|L1 115638 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 407-121 chr18 56233604 56233926 + 2 NA Intergenic Intergenic -42503 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 472-143 chr19 52447530 52447909 + 2 NA intron (NM_001291368, intron 4 of 4) L1MD|LINE|L1 -5834 NM_001366182 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 376-209 chr20 10121844 10122146 + 2 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) 87008 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 198-71 chr14 86677220 86677378 + 2 NA Intergenic (AACA)n|Simple_repeat|Simple_repeat -228479 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 366-393 chr6 162497310 162497528 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -229713 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 223-237 chr4 17200791 17200902 + 2 NA Intergenic Intergenic -14789 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 298-395 chr6 50446778 50446998 + 2 NA Intergenic Intergenic -266656 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 500-307 chr8 128330492 128330848 + 2 NA Intergenic MIRb|SINE|MIR 180554 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 334-224 chr18 24786927 24787176 + 2 NA Intergenic Intergenic 61270 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 386-27 chr10 21777306 21777609 + 2 NA intron (NM_022365, intron 9 of 11) intron (NM_022365, intron 9 of 11) 226273 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 205-301 chrX 28062881 28063056 + 2 NA Intergenic Intergenic -81519 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 259-402 chr8 95496530 95496779 + 2 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -227453 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 574-118 chr4 13660084 13660425 + 2 NA intron (NR_121681, intron 2 of 3) L2c|LINE|L2 5075 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 316-238 chr19 52255313 52255605 + 2 NA Intergenic Intergenic -14128 NM_001010851 90321 Hs.439662 NM_001010851 ENSG00000196214 ZNF766 - zinc finger protein 766 protein-coding 512-250 chr7 15879893 15880274 + 2 NA Intergenic L1ME2|LINE|L1 191705 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 306-154 chr14 82569271 82569533 + 2 NA Intergenic MIRb|SINE|MIR -73230 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 612-67 chr2 132551895 132552295 + 2 NA intron (NM_001508, intron 1 of 1) MER2|DNA|TcMar-Tigger 118110 NM_001321235 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 421-214 chr4 59166455 59166706 + 2 NA Intergenic L1PA16|LINE|L1 153007 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 383-316 chr5 58693525 58693725 + 2 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 110550 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 544-163 chr4 62924583 62924927 + 2 NA Intergenic Intergenic -762990 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 316-470 chr5 180159863 180160124 + 2 NA intron (NM_175062, intron 1 of 13) intron (NM_175062, intron 1 of 13) 49218 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 288-279 chr3 168747605 168747877 + 2 NA intron (NR_021485, intron 6 of 15) intron (NR_021485, intron 6 of 15) -154204 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 231-310 chr6 66989691 66989853 + 2 NA Intergenic L1M3b|LINE|L1 -1065579 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 193-205 chr8 121814201 121814318 + 2 NA Intergenic Intergenic -172819 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 297-401 chr6 54223224 54223475 + 2 NA intron (NM_138569, intron 10 of 12) L1MA9|LINE|L1 -85092 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 577-183 chr7 37307133 37307667 + 2 NA intron (NM_001206480, intron 4 of 21) THE1C|LTR|ERVL-MaLR 46268 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 386-72 chr12 18804607 18804830 + 2 NA Intergenic Intergenic 66599 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 360-452 chr8 49748404 49748586 + 2 NA Intergenic L1M4c|LINE|L1 -161301 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 268-429 chr9 15713033 15713263 + 2 NA intron (NM_001355547, intron 10 of 24) ERVL-E-int|LTR|ERVL 149170 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 245-227 chr3 43856832 43856988 + 2 NA Intergenic Intergenic -165316 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 327-29 chr1 229973385 229973568 + 2 NA Intergenic Intergenic -29241 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 329-379 chr3 107410678 107410984 + 2 NA Intergenic Intergenic -20099 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 312-418 chr5 74071562 74071727 + 2 NA Intergenic Intergenic 236681 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 303-19 chr1 217142572 217142731 + 2 NA Intergenic Intergenic -4949 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 398-29 chr1 240385144 240385492 + 2 NA intron (NM_020066, intron 14 of 17) intron (NM_020066, intron 14 of 17) 226837 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 250-231 chr2 202603678 202603901 + 2 NA Intergenic Intergenic -31180 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 263-274 chr4 10977272 10977492 + 2 NA Intergenic Intergenic -292614 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 623-99 chr4 164030314 164030769 + 2 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) 167170 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 390-294 chr5 58267124 58267416 + 2 NA Intergenic Intergenic -144929 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 486-60 chr12 58556139 58556607 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -35329 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 266-385 chr7 5069360 5069525 + 2 NA TTS (NM_021163) TTS (NM_021163) -2618 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 190-27 chr11 50716190 50716365 + 2 NA Intergenic ALR/Alpha|Satellite|centr 307130 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 551-155 chr5 63699454 63699996 + 2 NA Intergenic Intergenic 262567 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 368-435 chr7 113996071 113996339 + 2 NA Intergenic AluJr|SINE|Alu -77196 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 235-350 chr8 62218110 62218276 + 2 NA Intergenic Intergenic -30661 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 367-145 chr16 14185462 14185766 + 2 NA intron (NM_001308142, intron 3 of 16) L2a|LINE|L2 -1072 NM_001365413 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 687-98 chr5 152143342 152143865 + 2 NA intron (NR_109876, intron 1 of 2) MIR|SINE|MIR 184705 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 440-130 chr2 157406145 157406437 + 2 NA Intergenic L1MCa|LINE|L1 -25782 NR_034169 728066 Hs.470311 NR_034169 FAM133DP - family with sequence similarity 133, member A pseudogene pseudo 577-54 chr13 83083665 83084130 + 2 NA Intergenic LTR19A|LTR|ERV1 798496 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 428-64 chr14 30683821 30684099 + 2 NA intron (NM_016106, intron 14 of 24) intron (NM_016106, intron 14 of 24) 61641 NM_016106 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 202-124 chr2 105228799 105228954 + 2 NA Intergenic L1MC1|LINE|L1 -12867 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 421-16 chr1 185029465 185029825 + 2 NA Intergenic L1MC1|LINE|L1 -15913 NM_007212 6045 Hs.591490 NM_007212 ENSG00000121481 RNF2 BAP-1|BAP1|DING|HIPI3|RING1B|RING2 ring finger protein 2 protein-coding 529-16 chr10 62816448 62816835 + 2 NA promoter-TSS (NM_000399) promoter-TSS (NM_000399) -275 NM_001321037 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 319-340 chr3 106906496 106906802 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 333989 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 200-155 chr20 23011893 23012019 + 2 NA Intergenic Intergenic -23464 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 738-28 chr16 76538106 76538511 + 2 NA exon (NM_001322188, exon 19 of 25) exon (NM_001322188, exon 19 of 25) -96690 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 169-17 chr11 35969440 35969559 + 2 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 25437 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 306-88 chr11 104605861 104606099 + 2 NA intron (NR_120585, intron 1 of 3) L1ME2|LINE|L1 3322 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 226-304 chr6 79153462 79153588 + 2 NA Intergenic Intergenic -75271 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 565-181 chr8 81388785 81389199 + 2 NA Intergenic Intergenic 58447 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 191-152 chr4 81687846 81687999 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -216015 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 125-43 chr4 34472454 34472536 + 2 NA Intergenic Intergenic -202748 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 356-57 chr10 80555568 80555851 + 2 NA intron (NM_001145719, intron 1 of 6) MER81|DNA|hAT-Blackjack 14890 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 233-306 chr5 81123770 81123940 + 2 NA intron (NM_006909, intron 16 of 26) intron (NM_006909, intron 16 of 26) -109465 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 345-260 chr2 78314441 78314696 + 2 NA Intergenic L2b|LINE|L2 -23837 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 305-344 chr3 62305166 62305332 + 2 NA intron (NR_038281, intron 2 of 4) L1PA8|LINE|L1 13698 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 369-307 chr4 170438004 170438331 + 2 NA Intergenic Intergenic 211576 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 218-149 chr2 54911949 54912110 + 2 NA intron (NM_001039753, intron 24 of 40) intron (NM_001039753, intron 24 of 40) 98243 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 361-193 chr19 28780268 28780578 + 2 NA Intergenic L1P4a|LINE|L1 -52729 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 229-348 chr6 169415553 169415692 + 2 NA Intergenic L1ME3|LINE|L1 -161508 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 347-485 chr7 130107249 130107536 + 2 NA intron (NM_014997, intron 2 of 9) L1M5|LINE|L1 -34339 NR_149033 100128325 Hs.105944 NR_149033 ENSG00000229196 LOC100128325 - uncharacterized LOC100128325 ncRNA 474-296 chr8 125723109 125723534 + 2 NA Intergenic MER34A|LTR|ERV1 227876 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 338-561 chr8 122427114 122427367 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 141404 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 384-258 chr4 47275896 47276104 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 187702 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 319-347 chr3 161766637 161766937 + 2 NA Intergenic Intergenic 269979 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 534-61 chr12 34213163 34213683 + 2 NA Intergenic Intergenic 190927 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 162-101 chr4 144623031 144623172 + 2 NA Intergenic Intergenic 22918 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 508-182 chr5 19027652 19028056 + 2 NA Intergenic L1MEg|LINE|L1 858418 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 354-241 chr2 188076610 188076845 + 2 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 210964 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 601-140 chr7 64395060 64395480 + 2 NA Intergenic ALR/Alpha|Satellite|centr -38423 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 122-53 chr7 112994888 112994992 + 2 NA intron (NR_110162, intron 1 of 5) L1MA8|LINE|L1 703 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 248-318 chr5 90920462 90920586 + 2 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 361727 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 238-338 chr6 140178469 140178684 + 2 NA Intergenic L2a|LINE|L2 -26676 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 647-95 chr7 86350626 86351264 + 2 NA Intergenic L1MCb|LINE|L1 -292964 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 377-282 chr4 33274244 33274596 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 765473 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 342-164 chr15 79950578 79950760 + 2 NA Intergenic AluSc5|SINE|Alu 20527 NM_004049 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 261-93 chr14 23460784 23460951 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -8836 NM_015514 25983 Hs.9043 NM_015514 ENSG00000129460 NGDN C14orf120|CANu1|LCP5|NGD|lpd-2 neuroguidin protein-coding 730-65 chr6 54793168 54793865 + 2 NA Intergenic AluSg|SINE|Alu -53255 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 588-62 chr19 37791470 37791895 + 2 NA Intergenic Intergenic -12092 NM_152360 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 274-83 chr11 102877191 102877356 + 2 NA Intergenic Intergenic -2291 NM_002426 4321 Hs.1695 NM_002426 ENSG00000262406 MMP12 HME|ME|MME|MMP-12 matrix metallopeptidase 12 protein-coding 296-43 chr10 49096400 49096614 + 2 NA intron (NM_001031746, intron 2 of 7) intron (NM_001031746, intron 2 of 7) 19015 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 341-481 chr6 164935886 164936087 + 2 NA Intergenic Intergenic -113923 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 538-33 chr10 114751008 114751345 + 2 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -13612 NR_120628 101927692 Hs.576909 NR_120628 ENSG00000228484 LOC101927692 - uncharacterized LOC101927692 ncRNA 291-34 chr1 218614212 218614399 + 2 NA intron (NR_031644, intron 3 of 6) UCON51|LTR?|LTR? 104210 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 506-164 chr2 228956488 228956884 + 2 NA Intergenic Intergenic 275406 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 317-118 chr12 128497966 128498231 + 2 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 204006 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 229-328 chr5 163008036 163008215 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -429446 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 295-390 chr5 156611149 156611354 + 2 NA intron (NM_001128209, intron 5 of 7) L1MA6|LINE|L1 -239044 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 176-35 chr15 80996554 80996688 + 2 NA TTS (NR_039739) TTS (NR_039739) 852 NR_039739 100616181 NR_039739 ENSG00000265855 MIR4514 - microRNA 4514 ncRNA 310-90 chr11 106835705 106835974 + 2 NA intron (NM_001256424, intron 4 of 8) L1MEd|LINE|L1 182637 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 188-123 chr3 8522828 8522974 + 2 NA intron (NM_001278233, intron 1 of 4) intron (NM_001278233, intron 1 of 4) 21078 NM_001278235 29995 Hs.475353 NM_014583 ENSG00000071282 LMCD1 - LIM and cysteine rich domains 1 protein-coding 338-604 chrX 66176411 66176637 + 2 NA intron (NM_001367233, intron 4 of 20) L1PA4|LINE|L1 8774 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 348-118 chr12 99279680 99279880 + 2 NA intron (NM_152788, intron 12 of 25) AluJb|SINE|Alu -124690 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 265-59 chr11 33592138 33592396 + 2 NA intron (NM_012194, intron 12 of 20) L2b|LINE|L2 108473 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 384-415 chrX 151588357 151588708 + 2 NA intron (NM_173493, intron 1 of 15) (CTGA)n|Simple_repeat|Simple_repeat 24857 NM_173493 139135 Hs.160594 NM_173493 ENSG00000166049 PASD1 CT63|CT64|OXTES1 PAS domain containing repressor 1 protein-coding 373-304 chr4 189263066 189263265 + 2 NA Intergenic Intergenic -396441 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 325-586 chrX 97366170 97366366 + 2 NA intron (NM_007309, intron 24 of 26) (CT)n|Simple_repeat|Simple_repeat 198267 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 276-88 chr11 87068132 87068288 + 2 NA intron (NR_033149, intron 2 of 13) intron (NR_033149, intron 2 of 13) 30276 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 281-111 chr14 32894260 32894504 + 2 NA Intergenic Intergenic -44497 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 311-240 chr2 30810307 30810552 + 2 NA Intergenic Intergenic -2983 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 518-43 chr10 120531741 120532143 + 2 NA intron (NM_001030059, intron 5 of 6) L1PA7|LINE|L1 -66007 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 293-357 chr5 163914312 163914495 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 408784 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 335-94 chr11 60652015 60652217 + 2 NA intron (NR_026946, intron 4 of 6) L1M1|LINE|L1 36365 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 288-130 chr15 37344410 37344690 + 2 NA Intergenic Intergenic -243239 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 390-70 chr12 30272713 30273030 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 404373 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 182-78 chr18 66381107 66381252 + 2 NA Intergenic Intergenic 222911 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 358-49 chr10 66506183 66506393 + 2 NA intron (NM_001127384, intron 11 of 17) MSTB1|LTR|ERVL-MaLR -419748 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 397-264 chr5 121207043 121207384 + 2 NA Intergenic L1MCc|LINE|L1 -115337 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 233-30 chr10 20583649 20583863 + 2 NA Intergenic L1MCb|LINE|L1 31786 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 272-314 chr4 96038286 96038521 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie 198310 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 196-54 chr12 5516045 5516206 + 2 NA Intergenic Intergenic 21993 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 239-168 chr2 52624508 52624738 + 2 NA Intergenic Intergenic 77992 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 442-191 chr3 105768248 105768529 + 2 NA intron (NR_135806, intron 4 of 20) L2c|LINE|L2 99203 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 331-421 chr5 67555039 67555219 + 2 NA Intergenic L1MA7|LINE|L1 91660 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 421-250 chr5 150925637 150925997 + 2 NA Intergenic L1M3b|LINE|L1 20767 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 183-146 chr7 77290613 77290752 + 2 NA intron (NM_020879, intron 17 of 18) intron (NM_020879, intron 17 of 18) -90863 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 312-168 chr15 80297030 80297206 + 2 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 44687 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 200-170 chr3 40883632 40883758 + 2 NA Intergenic L1MC5|LINE|L1 -315810 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 306-537 chr9 4240956 4241109 + 2 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 59036 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 526-227 chr7 33211707 33212194 + 2 NA intron (NM_198428, intron 5 of 22) L1MA3|LINE|L1 82386 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 397-195 chr21 43199276 43199571 + 2 NA Intergenic L1MEc|LINE|L1 29187 NM_001320719 102724652 Hs.184085 NM_001314050 ENSG00000276076 CRYAA2 CRYAA crystallin alpha A2 protein-coding 422-288 chr7 108932642 108932863 + 2 NA Intergenic Intergenic -48165 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 320-67 chr10 95078456 95078658 + 2 NA Intergenic L1MA2|LINE|L1 -9060 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 499-34 chr10 125238381 125238817 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -77569 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 282-56 chr10 107922193 107922425 + 2 NA intron (NR_125760, intron 4 of 4) L1PA12|LINE|L1 146984 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 299-40 chr10 16728162 16728453 + 2 NA intron (NM_152724, intron 6 of 7) intron (NM_152724, intron 6 of 7) 89117 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 387-76 chr12 22969452 22969785 + 2 NA Intergenic MIRc|SINE|MIR -206018 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 380-302 chr5 45434737 45435068 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 261478 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 339-203 chr16 76989326 76989613 + 2 NA Intergenic Intergenic 120533 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 378-181 chr17 77094990 77095199 + 2 NA TTS (NR_027058) TTS (NR_027058) 5677 NR_106997 102466864 NR_106997 ENSG00000284250 MIR6516 hsa-mir-6516 microRNA 6516 ncRNA 481-275 chr7 36934858 36935272 + 2 NA intron (NM_001206480, intron 16 of 21) THE1B|LTR|ERVL-MaLR -15633 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 522-220 chr6 45751513 45751959 + 2 NA Intergenic Intergenic 185861 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 310-216 chr19 51620258 51620506 + 2 NA intron (NM_003830, intron 8 of 8) L1ME3F|LINE|L1 10092 NM_003830 8778 Hs.310333 NM_003830 ENSG00000105501 SIGLEC5 CD170|CD33L2|OB-BP2|OBBP2|SIGLEC-5 sialic acid binding Ig like lectin 5 protein-coding 247-225 chr2 205520844 205520996 + 2 NA intron (NM_205863, intron 20 of 21) L1ME4a|LINE|L1 -161580 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 224-237 chr4 177012706 177012861 + 2 NA Intergenic L1M2|LINE|L1 137081 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 349-458 chr6 129014145 129014342 + 2 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 131102 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 440-33 chr10 130420479 130420822 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 284241 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 310-269 chr2 173296293 173296541 + 2 NA Intergenic LTR25-int|LTR|ERV1 -14381 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 252-49 chr10 76772808 76773052 + 2 NA Intergenic Intergenic -115114 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 289-86 chr11 79800042 79800275 + 2 NA Intergenic Intergenic -359128 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 239-283 chr4 81526649 81526850 + 2 NA Intergenic LTR33|LTR|ERVL -54842 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 260-150 chr15 81689552 81689753 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -315439 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 328-134 chr13 89889800 89890056 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 229789 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 281-291 chr3 106529460 106529618 + 2 NA Intergenic Intergenic -660138 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 332-447 chr6 18837633 18837916 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 265990 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 216-43 chr10 91124647 91124819 + 2 NA Intergenic Intergenic 28347 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 498-96 chr15 95706689 95707058 + 2 NA Intergenic Intergenic 273780 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 250-164 chr17 67274649 67274877 + 2 NA Intergenic MLT2B2|LTR|ERVL -29567 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 519-198 chr6 85777052 85777490 + 2 NA Intergenic L1M1|LINE|L1 -98538 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 419-183 chr3 66543118 66543487 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -42881 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 324-15 chr1 85018387 85018564 + 2 NA 3' UTR (NM_001253693, exon 12 of 12) 3' UTR (NM_001253693, exon 12 of 12) -21362 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 252-151 chr17 10249880 10250052 + 2 NA Intergenic MIR|SINE|MIR -51360 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 344-86 chr11 103374797 103375130 + 2 NA intron (NM_001377, intron 83 of 88) THE1D-int|LTR|ERVL-MaLR 265537 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 414-226 chr4 37302735 37302993 + 2 NA intron (NM_001144990, intron 1 of 6) L1MA5|LINE|L1 58121 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 397-202 chr3 28957830 28958079 + 2 NA Intergenic L1MC2|LINE|L1 322985 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 636-130 chr6 129842222 129842622 + 2 NA intron (NM_001010876, intron 3 of 4) intron (NM_001010876, intron 3 of 4) 18893 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 254-55 chr11 37502999 37503211 + 2 NA Intergenic Intergenic -435496 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 292-63 chr10 128310488 128310663 + 2 NA intron (NR_120619, intron 3 of 5) AluSz6|SINE|Alu 24625 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 583-99 chr20 9064575 9065005 + 2 NA Intergenic L2a|LINE|L2 -4264 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 346-512 chr8 139474054 139474261 + 2 NA Intergenic MIR1_Amn|SINE|MIR 228966 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 553-185 chr5 5859410 5859779 + 2 NA Intergenic LTR33A_|LTR|ERVL 436917 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 317-279 chr20 46736556 46736734 + 2 NA TTS (NM_030777) TTS (NM_030777) 26996 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 206-28 chr10 24462068 24462253 + 2 NA intron (NM_001321681, intron 1 of 13) (TA)n|Simple_repeat|Simple_repeat -4371 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 529-103 chr2 76446588 76446909 + 2 NA Intergenic Intergenic -539217 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 259-305 chr5 10515346 10515539 + 2 NA intron (NR_134289, intron 1 of 2) L1M4|LINE|L1 -6248 NR_134290 389273 Hs.519206 NR_134289 ENSG00000249160 LINC02213 - long intergenic non-protein coding RNA 2213 ncRNA 264-263 chr3 4371644 4371830 + 2 NA intron (NM_001164675, intron 7 of 7) MIR|SINE|MIR 68433 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 554-121 chr2 129710271 129710661 + 2 NA Intergenic LTR49|LTR|ERV1 167025 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 339-155 chr14 53199070 53199247 + 2 NA Intergenic Intergenic 45804 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 370 chr1 42087811 42088017 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -51980 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 294-82 chr12 41394239 41394424 + 2 NA intron (NM_001164595, intron 3 of 9) MLT1H1|LTR|ERVL-MaLR -43408 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 443-289 chr8 52332879 52333272 + 2 NA intron (NR_148195, intron 2 of 3) MIRb|SINE|MIR 76681 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 336-308 chr2 225732785 225732968 + 2 NA Intergenic Intergenic 331990 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 420-303 chr9 24968083 24968342 + 2 NA Intergenic Intergenic -422315 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 293-12 chr1 117469321 117469575 + 2 NA intron (NM_006699, intron 8 of 12) L1MB4|LINE|L1 101999 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 336-145 chr12 129265938 129266151 + 2 NA intron (NM_133448, intron 4 of 8) L2a|LINE|L2 57443 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 134-76 chr6 70550713 70550841 + 2 NA intron (NM_020819, intron 19 of 20) Tigger1|DNA|TcMar-Tigger -16153 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 314-516 chr6 159544360 159544669 + 2 NA Intergenic Intergenic 148727 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 257-68 chr11 92788714 92788920 + 2 NA intron (NM_001008781, intron 6 of 24) L1MC5|LINE|L1 126811 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 306-339 chr3 191918578 191918779 + 2 NA Intergenic L1ME3C|LINE|L1 -319952 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 350-143 chr14 83984249 83984552 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -1287532 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 321-268 chr19 52137652 52137852 + 2 NA intron (NM_178523, intron 1 of 3) intron (NM_178523, intron 1 of 3) 2186 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 531-155 chr3 94657959 94658412 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -280078 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 249-412 chr8 78363892 78364094 + 2 NA Intergenic Intergenic -152347 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 171-41 chr16 68552127 68552266 + 2 NA intron (NR_130976, intron 2 of 4) intron (NR_130976, intron 2 of 4) 12905 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 389-51 chr10 133595732 133595955 + 2 NA Intergenic L1MC|LINE|L1 -25885 NR_033789 399833 Hs.660426 NM_001001678 SPRNP1 - shadow of prion protein pseudogene 1 pseudo 371-422 chr9 136079647 136079899 + 2 NA intron (NM_144653, intron 1 of 5) intron (NM_144653, intron 1 of 5) 15516 NM_144653 138151 Hs.112895 NM_144653 ENSG00000148411 NACC2 BEND9|BTBD14|BTBD14A|BTBD31|NAC-2|RBB NACC family member 2 protein-coding 382-46 chr10 92886645 92886882 + 2 NA intron (NM_001319195, intron 1 of 21) intron (NM_001319195, intron 1 of 21) 38243 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 288-480 chrX 82776251 82776531 + 2 NA Intergenic Intergenic -731899 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 300-276 chr3 82450969 82451152 + 2 NA intron (NR_147146, intron 4 of 8) intron (NR_147146, intron 4 of 8) 464918 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 528-116 chr19 30171004 30171395 + 2 NA Intergenic (GTGT)n|Simple_repeat|Simple_repeat -201185 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 380-115 chr14 33886886 33887140 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 64061 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 483-240 chr7 37659843 37660303 + 2 NA Intergenic Intergenic -23693 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 194-212 chr8 110319559 110319726 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -343871 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 324-556 chr8 138439729 138439895 + 2 NA intron (NM_001362965, intron 1 of 19) MIRb|SINE|MIR 57449 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 234-146 chr18 64652231 64652415 + 2 NA Intergenic Intergenic -392268 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 351-216 chr2 59458490 59458754 + 2 NA Intergenic MIR|SINE|MIR 240914 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 728-33 chr14 71762121 71762756 + 2 NA Intergenic L1MEg2|LINE|L1 -169733 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 549-122 chr2 184521493 184521868 + 2 NA Intergenic Intergenic -76849 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 144-6 chr1 86524380 86524464 + 2 NA Intergenic Intergenic -22656 NR_024602 22802 Hs.567422 NM_012128 ENSG00000016602 CLCA4 CaCC|CaCC2 chloride channel accessory 4 protein-coding 584-63 chr18 73690602 73691094 + 2 NA Intergenic MIRb|SINE|MIR 365907 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 852-28 chr2 65697186 65697635 + 2 NA Intergenic AluJb|SINE|Alu -264811 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 276-176 chr16 8245749 8245963 + 2 NA Intergenic MIR|SINE|MIR 343982 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 431-3 chr1 24264294 24264655 + 2 NA Intergenic L2a|LINE|L2 -54883 NM_198174 57822 Hs.657920 NM_021180 ENSG00000158055 GRHL3 SOM|TFCP2L4|VWS2 grainyhead like transcription factor 3 protein-coding 350-530 chr8 117028134 117028310 + 2 NA intron (NM_001172813, intron 2 of 10) intron (NM_001172813, intron 2 of 10) 77247 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 345-277 chr2 118421940 118422167 + 2 NA Intergenic L1MCc|LINE|L1 180913 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 259-140 chr15 84838339 84838572 + 2 NA intron (NM_020778, intron 3 of 13) intron (NM_020778, intron 3 of 13) 21775 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 597-68 chr2 67430929 67431407 + 2 NA Intergenic L1M7|LINE|L1 33835 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 281-370 chr5 117765803 117766023 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 35552 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 204-49 chr12 7483178 7483380 + 2 NA intron (NR_163255, intron 12 of 16) intron (NR_163255, intron 12 of 16) 20498 NR_163255 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 927-9 chr2 200639706 200640199 + 2 NA intron (NM_001159, intron 23 of 34) AluSx1|SINE|Alu 53938 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 728-59 chr3 18664788 18665335 + 2 NA Intergenic Intergenic -219469 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 267-14 chr1 89923166 89923417 + 2 NA intron (NM_001134479, intron 2 of 2) intron (NM_001134479, intron 2 of 2) 71675 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 230-398 chr9 94533170 94533349 + 2 NA Intergenic Intergenic -21786 NR_121568 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 ncRNA 528-202 chr5 61985397 61985802 + 2 NA Intergenic Intergenic -249901 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 231-2 chr1 18435388 18435531 + 2 NA Intergenic MIR|SINE|MIR -45471 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 355-6 chr1 50395454 50395727 + 2 NA Intergenic L1ME1|LINE|L1 27853 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 248-246 chr3 95344464 95344655 + 2 NA Intergenic MIRb|SINE|MIR 338634 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 202-245 chr7 135121477 135121653 + 2 NA intron (NM_001345851, intron 10 of 10) L1MD1|LINE|L1 -26507 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 158-25 chr13 68909143 68909225 + 2 NA Intergenic L1MA3|LINE|L1 -23859 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 270-410 chr8 124123188 124123408 + 2 NA intron (NR_103547, intron 1 of 4) L2b|LINE|L2 48224 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 178-52 chr16 55429334 55429483 + 2 NA non-coding (NR_147198, exon 5 of 7) non-coding (NR_147198, exon 5 of 7) 32889 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 345-453 chr5 179156707 179156895 + 2 NA intron (NM_014244, intron 6 of 21) HAL1ME|LINE|L1 96428 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 218-144 chr2 19408889 19409035 + 2 NA Intergenic Intergenic -50339 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 531-29 chr10 116261560 116261958 + 2 NA intron (NM_005264, intron 4 of 10) intron (NM_005264, intron 4 of 10) -5964 NM_001348099 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 455-239 chr6 62117959 62118371 + 2 NA intron (NR_146874, intron 2 of 13) L1MA4|LINE|L1 168060 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 223-263 chr5 5057568 5057755 + 2 NA non-coding (NR_026994, exon 3 of 7) non-coding (NR_026994, exon 3 of 7) 20650 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 363-169 chr16 73982135 73982321 + 2 NA Intergenic Intergenic 233293 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 150-62 chr22 27280976 27281094 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -29616 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 378-230 chr2 71954253 71954498 + 2 NA Intergenic L1MC1|LINE|L1 193487 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 317-405 chr5 180701745 180702005 + 2 NA Intergenic Intergenic 17779 NR_146728 105377765 Hs.131536 NR_146728 LINC02222 - long intergenic non-protein coding RNA 2222 ncRNA 384-160 chr2 21441736 21442077 + 2 NA Intergenic Intergenic 268746 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 248-16 chr1 166232906 166233048 + 2 NA Intergenic L1PA11|LINE|L1 -66222 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 262-266 chr22 34736888 34737040 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 260952 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 371-245 chr3 89805749 89806044 + 2 NA Intergenic Intergenic 698275 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 322-510 chr8 17343391 17343667 + 2 NA intron (NM_004686, intron 5 of 13) intron (NM_004686, intron 5 of 13) 69822 NM_004686 9108 Hs.625674 NM_004686 ENSG00000003987 MTMR7 - myotubularin related protein 7 protein-coding 423-231 chr5 118089286 118089660 + 2 NA intron (NR_104997, intron 2 of 2) MLT1D|LTR|ERVL-MaLR -193101 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 290-285 chr3 87855774 87855940 + 2 NA intron (NM_001322210, intron 2 of 2) Tigger7|DNA|TcMar-Tigger 63151 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 413-280 chr7 88240569 88240882 + 2 NA Intergenic AluSx1|SINE|Alu -13732 NM_198901 6717 Hs.489040 NM_003130 ENSG00000075142 SRI CP-22|CP22|SCN|V19 sorcin protein-coding 458-149 chr2 185127360 185127706 + 2 NA Intergenic Intergenic 39539 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 511-46 chr12 30331237 30331676 + 2 NA Intergenic Intergenic 345788 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 542-115 chr20 9768067 9768605 + 2 NA intron (NM_177990, intron 1 of 9) L1PA11|LINE|L1 70740 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 529-37 chr11 112910582 112911033 + 2 NA Intergenic Intergenic -50613 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 297-146 chr15 47236317 47236516 + 2 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 52327 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 539-213 chr9 22603100 22603501 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -42900 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 347-146 chr15 33802438 33802772 + 2 NA intron (NM_001243996, intron 69 of 102) Tigger19b|DNA|TcMar-Tigger -165892 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 604-7 chr1 191906465 191906889 + 2 NA Intergenic Intergenic -251785 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 180-169 chr8 82985792 82985944 + 2 NA Intergenic Intergenic 73764 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 235-369 chr8 120780773 120780947 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) 19607 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 260-54 chr10 62475144 62475382 + 2 NA intron (NM_199451, intron 4 of 7) intron (NM_199451, intron 4 of 7) -45185 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 271-330 chr5 8647082 8647316 + 2 NA Intergenic Intergenic 186274 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 155-30 chr11 107843141 107843262 + 2 NA intron (NM_017515, intron 1 of 7) L1ME3F|LINE|L1 15586 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 369-255 chr22 34016631 34016981 + 2 NA Intergenic Intergenic -93918 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 319-547 chr8 124635475 124635697 + 2 NA intron (NM_001282971, intron 3 of 14) L2c|LINE|L2 92887 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 474-128 chr2 17086369 17086691 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -420696 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 382-373 chr7 8627980 8628253 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 194507 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 318-109 chr11 78971685 78971868 + 2 NA intron (NM_001098816, intron 6 of 33) L1ME4a|LINE|L1 -396912 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 348-568 chrX 64459020 64459235 + 2 NA Intergenic L1PA13|LINE|L1 -63675 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 198-49 chr12 13307881 13308040 + 2 NA Intergenic Intergenic 68785 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 428-287 chr8 41451214 41451593 + 2 NA Intergenic Intergenic 24748 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 315-423 chr6 99046919 99047105 + 2 NA Intergenic Intergenic -77597 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 375-297 chr4 96490271 96490538 + 2 NA intron (NR_147149, intron 2 of 3) MER39|LTR|ERV1 179701 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 333-576 chr8 103675482 103675673 + 2 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -143643 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 229-206 chr2 162758742 162758946 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -10092 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 388-361 chr8 144939052 144939309 + 2 NA intron (NM_006958, intron 2 of 2) L1MB5|LINE|L1 11700 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 354-77 chr11 35861654 35861928 + 2 NA Intergenic Intergenic -82190 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 330-271 chr2 79962072 79962351 + 2 NA intron (NM_001282598, intron 7 of 17) MLT1A0|LTR|ERVL-MaLR -95628 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 311-203 chr17 74228167 74228434 + 2 NA intron (NM_001330453, intron 2 of 13) intron (NM_001330453, intron 2 of 13) 12670 NM_001330453 94015 Hs.27935 NM_032646 ENSG00000141540 TTYH2 C17orf29 tweety family member 2 protein-coding 244-130 chr17 70117780 70117983 + 2 NA intron (NM_001291622, intron 4 of 5) L2a|LINE|L2 13036 NM_001291625 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 274-331 chr6 41395760 41396015 + 2 NA Intergenic Intergenic 60279 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 324-108 chr12 5377295 5377572 + 2 NA Intergenic Intergenic -54675 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 261-92 chr13 114181623 114181816 + 2 NA Intergenic Intergenic -49096 NM_007368 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 242-217 chr20 58164122 58164304 + 2 NA Intergenic Intergenic 13311 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 278-248 chr20 13508688 13508962 + 2 NA intron (NR_136631, intron 10 of 13) L1MA9|LINE|L1 130107 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 294-183 chr19 17735333 17735534 + 2 NA TTS (NM_001308363) TTS (NM_001308363) -12311 NM_001161358 23149 Hs.96485 NM_015122 ENSG00000130475 FCHO1 - FCH domain only 1 protein-coding 348-94 chr11 100240558 100240851 + 2 NA intron (NM_001243270, intron 15 of 23) intron (NM_001243270, intron 15 of 23) -446584 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 304-155 chr15 26987403 26987697 + 2 NA intron (NM_001270873, intron 2 of 5) MIR3|SINE|MIR 16369 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 290-259 chr21 29658960 29659146 + 2 NA intron (NM_000830, intron 4 of 16) L4_A_Mam|LINE|RTE-X 63013 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 356-300 chr21 34681750 34681959 + 2 NA intron (NM_053277, intron 1 of 5) MLT1F1|LTR|ERVL-MaLR 12860 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 217-387 chr9 25206544 25206744 + 2 NA Intergenic Intergenic 472214 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 309-380 chr4 19953985 19954261 + 2 NA Intergenic Intergenic -297782 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 534-265 chr8 124863725 124864210 + 2 NA Intergenic Intergenic -41909 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 347-56 chr10 66911956 66912190 + 2 NA intron (NR_111911, intron 3 of 6) intron (NR_111911, intron 3 of 6) -13963 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 364-66 chr10 69125883 69126132 + 2 NA intron (NM_001035260, intron 1 of 7) intron (NM_001035260, intron 1 of 7) 1829 NM_001318945 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 430-31 chr10 63361708 63362113 + 2 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) 11138 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 350-28 chr1 187416208 187416464 + 2 NA Intergenic LTR9A1|LTR|ERV1 -27292 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 292-371 chr6 12825573 12825791 + 2 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) 106983 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 325-238 chr18 31778163 31778346 + 2 NA Intergenic LTR8B|LTR|ERV1 -17374 NM_001034172 147407 Hs.567708 NM_001034172 ENSG00000141437 SLC25A52 MCART2 solute carrier family 25 member 52 protein-coding 216-343 chr8 135004680 135004838 + 2 NA Intergenic Intergenic 154824 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 332-54 chr10 32671027 32671204 + 2 NA intron (NM_001321115, intron 22 of 43) Tigger3|DNA|TcMar-Tigger 224975 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 188-46 chr13 58119108 58119229 + 2 NA Intergenic Intergenic -46659 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 439-271 chr7 80289857 80290195 + 2 NA Intergenic L1M1|LINE|L1 84413 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 884 chr10 59571382 59572040 + 2 NA Intergenic L1MEc|LINE|L1 138180 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 372-457 chr7 62730442 62730720 + 2 NA Intergenic ALR/Alpha|Satellite|centr 573475 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 322-371 chr4 66029495 66029707 + 2 NA Intergenic AluSx1|SINE|Alu -247223 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 384-71 chr12 16195883 16196125 + 2 NA intron (NM_001170798, intron 7 of 8) intron (NM_001170798, intron 7 of 8) 81681 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 205-152 chr2 161921056 161921193 + 2 NA intron (NM_001354443, intron 15 of 25) intron (NM_001354443, intron 15 of 25) 153091 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 367-2 chr1 4384663 4384995 + 2 NA Intergenic LTR81AB|LTR|Gypsy -27222 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 492-127 chr2 52265005 52265387 + 2 NA intron (NR_135237, intron 7 of 10) PABL_A-int|LTR|ERV1 -105452 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 323-230 chr2 22441641 22441879 + 2 NA Intergenic Intergenic -94719 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 216-116 chr15 90849768 90849976 + 2 NA Intergenic AluJo|SINE|Alu -18716 NM_002569 5045 Hs.513153 NM_002569 ENSG00000140564 FURIN FUR|PACE|PCSK3|SPC1 furin, paired basic amino acid cleaving enzyme protein-coding 224-213 chr3 186628864 186629056 + 2 NA Intergenic MER87|LTR|ERV1 -11439 NM_014375 26998 Hs.81073 NM_014375 ENSG00000090512 FETUB 16G2|Gugu|IRL685 fetuin B protein-coding 240-83 chr11 81665718 81665902 + 2 NA Intergenic Intergenic 225026 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 407-84 chr14 68866299 68866665 + 2 NA Intergenic L3|LINE|CR1 -70239 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 493-243 chr5 63521772 63522065 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 440374 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 230-50 chr10 108496821 108496992 + 2 NA Intergenic Intergenic -427613 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 402-124 chr18 38737174 38737528 + 2 NA Intergenic Intergenic 884824 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 317-477 chr8 55393452 55393756 + 2 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 61717 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 524-42 chr11 112088766 112089219 + 2 NA exon (NM_001276504, exon 2 of 3) exon (NM_001276504, exon 2 of 3) 2119 NM_001276504 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 280-247 chr3 9043573 9043773 + 2 NA intron (NM_014850, intron 10 of 21) intron (NM_014850, intron 10 of 21) -80201 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 355-166 chr15 27713727 27713922 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 385491 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 145-5 chr1 191386903 191386990 + 2 NA Intergenic Intergenic -158448 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 295-16 chr1 124932832 124932990 + 2 NA Intergenic ALR/Alpha|Satellite|centr 3413799 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 393-2 chr1 19952073 19952310 + 2 NA Intergenic Intergenic 27468 NM_001161729 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 583-137 chr5 55769973 55770381 + 2 NA intron (NM_001166534, intron 2 of 14) intron (NM_001166534, intron 2 of 14) 3292 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 266-18 chr1 174732292 174732472 + 2 NA intron (NM_001366451, intron 2 of 12) intron (NM_001366451, intron 2 of 12) 31387 NM_001366452 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 262-210 chr2 100376429 100376673 + 2 NA Intergenic Intergenic 41117 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 304-525 chr8 105982214 105982512 + 2 NA intron (NR_125797, intron 1 of 4) L1MA8|LINE|L1 78140 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 327-184 chr16 49094640 49094872 + 2 NA Intergenic L3|LINE|CR1 187082 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 354-334 chr4 71751603 71751950 + 2 NA intron (NM_000583, intron 11 of 12) HAL1b|LINE|L1 32303 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 308-71 chr10 108192651 108192843 + 2 NA Intergenic Intergenic -123454 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 325-285 chr2 148083206 148083398 + 2 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -61698 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 482-294 chr9 40908987 40909396 + 2 NA Intergenic CER|Satellite|Satellite 19901 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 389-375 chr8 135381079 135381387 + 2 NA Intergenic Intergenic -76223 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 197-63 chr15 35275684 35275842 + 2 NA Intergenic L1PB1|LINE|L1 38437 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 272-218 chr2 153380135 153380363 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 98513 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 500-58 chr11 97509739 97510117 + 2 NA Intergenic MER110-int|LTR|ERV1 1001503 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 353-159 chr15 54372587 54372813 + 2 NA intron (NM_001329919, intron 16 of 31) L1ME3D|LINE|L1 360052 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 293-25 chr1 241099778 241099993 + 2 NA intron (NM_001282778, intron 2 of 16) L1MC4a|LINE|L1 -32387 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 251-293 chr5 29853361 29853511 + 2 NA Intergenic Intergenic -27124 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 189-91 chr2 106934698 106934879 + 2 NA Intergenic Intergenic -47679 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 490-240 chr6 41701507 41701862 + 2 NA intron (NM_001167827, intron 1 of 8) AluSz|SINE|Alu 31926 NR_162107 113218489 NR_162107 MIR10398 - microRNA 10398 ncRNA 480-241 chr5 128214167 128214552 + 2 NA Intergenic Intergenic 130593 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 396-95 chr13 40814952 40815245 + 2 NA intron (NR_038259, intron 5 of 5) L1PA16|LINE|L1 4332 NR_030352 693206 NR_030352 ENSG00000207652 MIR621 MIRN621|hsa-mir-621 microRNA 621 ncRNA 209-144 chr2 5668040 5668188 + 2 NA intron (NR_110580, intron 2 of 4) intron (NR_110580, intron 2 of 4) 23004 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 263-377 chr7 4860786 4861016 + 2 NA exon (NM_020144, exon 1 of 1) exon (NM_020144, exon 1 of 1) 1129 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 481-299 chr8 122050452 122050765 + 2 NA Intergenic MIR|SINE|MIR -409168 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 239-53 chr11 19012668 19012888 + 2 NA Intergenic L1PB1|LINE|L1 47239 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 317-113 chr12 97269239 97269443 + 2 NA Intergenic Intergenic -193435 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 186-104 chr3 7736124 7736304 + 2 NA intron (NM_181874, intron 10 of 10) L1ME3Cz|LINE|L1 -200930 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 338-207 chr16 83302458 83302672 + 2 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -205781 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 174-85 chr3 16952679 16952786 + 2 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 19536 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 455-15 chr1 178673355 178673705 + 2 NA Intergenic L1MA9|LINE|L1 -4219 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 260-208 chr2 67452673 67452827 + 2 NA Intergenic AluSp|SINE|Alu 55417 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 289-30 chr1 195917490 195917655 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 171143 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 187-187 chr9 78040653 78040797 + 2 NA Intergenic Intergenic -8914 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 420-291 chr8 102182604 102182939 + 2 NA Intergenic Intergenic 56060 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 357-333 chr5 11586916 11587124 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) 1897 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 266-286 chr4 63092992 63093186 + 2 NA Intergenic Intergenic -931324 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 409-16 chr1 247939055 247939324 + 2 NA intron (NM_001304535, intron 1 of 1) MER57D|LTR|ERV1 2160 NM_175911 284521 Hs.372936 NM_175911 ENSG00000196071 OR2L13 OR2L14 olfactory receptor family 2 subfamily L member 13 protein-coding 488-223 chr5 118916968 118917252 + 2 NA intron (NM_001308081, intron 4 of 5) intron (NM_001308081, intron 4 of 5) -57476 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 374-429 chrX 82156053 82156411 + 2 NA Intergenic Ricksha_b|DNA|MULE-MuDR 954130 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 130-22 chr14 60984819 60984903 + 2 NA intron (NR_033344, intron 3 of 16) intron (NR_033344, intron 3 of 16) -3171 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 335-173 chr15 64579188 64579377 + 2 NA intron (NM_015042, intron 1 of 8) AluJb|SINE|Alu 79862 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 278-336 chr5 54452671 54452837 + 2 NA Intergenic AluSx1|SINE|Alu -2945 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 360-31 chr10 33175246 33175585 + 2 NA Intergenic Intergenic -58608 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 254-346 chr6 47063529 47063729 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger -21297 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 288-276 chr3 145436065 145436247 + 2 NA Intergenic Intergenic 633029 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 361-493 chrX 116194882 116195226 + 2 NA Intergenic L1PB4|LINE|L1 24310 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 381-350 chr7 19348707 19348930 + 2 NA Intergenic Intergenic -203397 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 306-444 chr6 135226467 135226695 + 2 NA Intergenic AluSz6|SINE|Alu -12579 NR_030317 693126 NR_030317 ENSG00000207689 MIR548A2 MIRN548A2 microRNA 548a-2 ncRNA 390-204 chr2 227631174 227631510 + 2 NA intron (NM_020161, intron 1 of 2) intron (NM_020161, intron 1 of 2) 1978 NM_020161 56918 Hs.283092 NM_020161 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 349-272 chr2 125452942 125453158 + 2 NA Intergenic Intergenic 664935 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 245-169 chr18 67117138 67117271 + 2 NA Intergenic L1MA3|LINE|L1 35620 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 411-251 chr6 40410870 40411158 + 2 NA intron (NM_020737, intron 2 of 2) intron (NM_020737, intron 2 of 2) 32677 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 285-351 chr5 116016443 116016709 + 2 NA intron (NM_173800, intron 18 of 19) intron (NM_173800, intron 18 of 19) -34890 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 365-31 chr1 233752608 233752836 + 2 NA Intergenic L1MB7|LINE|L1 128570 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 404-231 chr4 64339808 64340198 + 2 NA intron (NM_001363796, intron 2 of 11) L2a|LINE|L2 69447 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 267-170 chr2 11199952 11200120 + 2 NA intron (NM_001321643, intron 23 of 32) L1ME3Cz|LINE|L1 44569 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 532-10 chr1 173020043 173020494 + 2 NA Intergenic MIRb|SINE|MIR 30695 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 389-178 chr2 80631912 80632231 + 2 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 318692 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 343-150 chr14 84962002 84962287 + 2 NA Intergenic Intergenic -309788 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 264-425 chr8 111287806 111288059 + 2 NA Intergenic Intergenic -51729 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 203-6 chr1 59822252 59822398 + 2 NA intron (NM_015888, intron 2 of 21) intron (NM_015888, intron 2 of 21) 7376 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 354-509 chrX 68962793 68963059 + 2 NA Intergenic L1MC1|LINE|L1 133929 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 801-69 chrX 58410952 58411471 + 2 NA Intergenic ALR/Alpha|Satellite|centr -500578 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 476-201 chr4 117564790 117565144 + 2 NA intron (NR_125757, intron 2 of 3) AluSx1|SINE|Alu 136569 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 269-215 chr2 180549432 180549649 + 2 NA Intergenic L1M6|LINE|L1 -142564 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 179-67 chr3 67908276 67908419 + 2 NA intron (NR_109992, intron 6 of 6) intron (NR_109992, intron 6 of 6) -83245 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 498-4 chr1 50208647 50208995 + 2 NA Intergenic Intergenic 98988 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 321-255 chr18 64476872 64477164 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -216963 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 213-47 chr10 106756593 106756728 + 2 NA intron (NM_001206569, intron 5 of 25) intron (NM_001206569, intron 5 of 25) 408046 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 154-49 chr2 52846198 52846280 + 2 NA Intergenic L1MB8|LINE|L1 -143624 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 481-224 chr4 92255452 92255785 + 2 NA Intergenic L1M2|LINE|L1 21684 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 155-24 chr10 103100118 103100239 + 2 NA intron (NM_001351194, intron 6 of 17) intron (NM_001351194, intron 6 of 17) 53643 NM_001351192 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 284-448 chr9 118572811 118573057 + 2 NA Intergenic L1ME2|LINE|L1 -106737 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 284-52 chr10 82715568 82715740 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -482734 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 543-256 chr8 139244145 139244519 + 2 NA Intergenic Intergenic -330291 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 231-140 chr18 70670305 70670463 + 2 NA Intergenic L1MA9|LINE|L1 -19430 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 208-61 chr12 68094865 68095029 + 2 NA Intergenic Intergenic 64793 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 488-286 chr9 26557075 26557413 + 2 NA Intergenic Intergenic 335558 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 509-267 chr9 9686245 9686681 + 2 NA intron (NM_002839, intron 7 of 45) (AAT)n|Simple_repeat|Simple_repeat -112929 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 345-484 chr7 15958985 15959276 + 2 NA Intergenic Intergenic -251356 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 370-298 chr22 39871037 39871232 + 2 NA intron (NM_152512, intron 2 of 6) AluJr|SINE|Alu 22626 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 369-149 chr16 54551721 54552007 + 2 NA Intergenic L1MB7|LINE|L1 -181165 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 420-94 chr16 62698034 62698270 + 2 NA Intergenic L2a|LINE|L2 -661714 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 247-11 chr1 92215338 92215499 + 2 NA Intergenic L2a|LINE|L2 -2497 NM_001012425 388649 Hs.558823 NM_001012425 ENSG00000203910 C1orf146 - chromosome 1 open reading frame 146 protein-coding 303-425 chr7 46787677 46787859 + 2 NA Intergenic Intergenic -90646 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 651-23 chr11 36691060 36691487 + 2 NA Intergenic Intergenic -92994 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 264-295 chr4 94152258 94152434 + 2 NA intron (NR_125922, intron 5 of 8) HERVL-int|LTR|ERVL 55210 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 266-149 chr17 69635722 69635861 + 2 NA intron (NR_109972, intron 3 of 4) L2|LINE|L2 41804 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 365-156 chr17 78163967 78164192 + 2 NA intron (NM_001163075, intron 3 of 4) intron (NM_001163075, intron 3 of 4) -4466 NM_004710 9144 Hs.464210 NM_004710 ENSG00000108639 SYNGR2 - synaptogyrin 2 protein-coding 254-104 chr14 28516064 28516225 + 2 NA Intergenic Intergenic 249175 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 156-57 chr2 183706864 183707013 + 2 NA Intergenic Intergenic 582495 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 198-157 chr3 27608396 27608577 + 2 NA Intergenic MER39B|LTR|ERV1 113837 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 178-73 chr2 225401197 225401360 + 2 NA intron (NM_001371273, intron 2 of 7) intron (NM_001371273, intron 2 of 7) 392 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 584-88 chr21 19599827 19600404 + 2 NA Intergenic AluSx1|SINE|Alu 299640 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 389-45 chr10 98805680 98806029 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 118714 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 438-278 chr8 101968762 101969076 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -15513 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 349-263 chr2 102082914 102083228 + 2 NA intron (NM_001320978, intron 1 of 11) intron (NM_001320978, intron 1 of 11) 12681 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 420-79 chr14 48308691 48308993 + 2 NA Intergenic HERVL-int|LTR|ERVL -513828 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 272-257 chr3 18090033 18090264 + 2 NA intron (NR_161333, intron 4 of 4) LTR16|LTR|ERVL 127596 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 528-137 chr2 180339791 180340170 + 2 NA Intergenic MER61-int|LTR|ERV1 -332683 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 306-539 chr9 11940505 11940801 + 2 NA Intergenic Intergenic -752732 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 339-224 chr18 6190037 6190337 + 2 NA intron (NM_001365769, intron 12 of 16) L1ME3|LINE|L1 -66557 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 371-20 chr1 182691195 182691562 + 2 NA Intergenic Intergenic -18446 NM_033345 85397 Hs.20982 NM_033345 ENSG00000135824 RGS8 - regulator of G protein signaling 8 protein-coding 261-305 chr5 33447521 33447777 + 2 NA intron (NR_047676, intron 3 of 19) intron (NR_047676, intron 3 of 19) 6873 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 368-490 chr9 137853552 137853854 + 2 NA Intergenic L1M2|LINE|L1 15284 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 284-330 chr5 122374868 122375013 + 2 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) -16149 NM_001308108 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 307-471 chr8 29690691 29690899 + 2 NA Intergenic L1MEd|LINE|L1 57314 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 314-538 chr7 56709613 56709818 + 2 NA Intergenic AluJo|SINE|Alu 103021 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 297-173 chr17 52627713 52627991 + 2 NA Intergenic Intergenic -234269 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 432-60 chr12 29170415 29170720 + 2 NA intron (NM_001271783, intron 1 of 11) HERV9N-int|LTR|ERV1 21289 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 228-305 chr6 152719358 152719528 + 2 NA intron (NM_025107, intron 1 of 1) MIR|SINE|MIR 21548 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 263-91 chr13 55242091 55242240 + 2 NA Intergenic Intergenic 67711 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 301-283 chr3 89666085 89666266 + 2 NA Intergenic L1MEc|LINE|L1 558554 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 364-479 chr9 135021324 135021639 + 2 NA Intergenic L2b|LINE|L2 -54024 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 347-294 chr3 5817947 5818209 + 2 NA Intergenic Intergenic -567823 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 537-63 chr14 43420308 43420649 + 2 NA Intergenic Intergenic 1086805 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 370-92 chr11 84680457 84680745 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 40341 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 309-306 chr20 45679299 45679532 + 2 NA Intergenic Intergenic -9176 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 273-320 chr4 44909295 44909447 + 2 NA Intergenic Intergenic -182737 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 377-279 chr4 226591 226860 + 2 NA intron (NR_027481, intron 1 of 1) L1PA13|LINE|L1 14125 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 594-101 chr4 66025442 66025820 + 2 NA Intergenic L1PA15|LINE|L1 -251193 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 550-141 chr22 33149667 33150062 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 41335 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 522-200 chr5 19167645 19168068 + 2 NA Intergenic Intergenic 718416 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 407-216 chr4 30344672 30344997 + 2 NA Intergenic Intergenic -375535 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 459-247 chr5 132934299 132934624 + 2 NA exon (NM_014423, exon 3 of 21) exon (NM_014423, exon 3 of 21) 29173 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 223-165 chr2 135304626 135304820 + 2 NA intron (NM_001286569, intron 8 of 21) L1M2|LINE|L1 168095 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 585-74 chr2 100496346 100496767 + 2 NA Intergenic Intergenic 26074 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 262-313 chr4 63980652 63980902 + 2 NA Intergenic L1MEg2|LINE|L1 428673 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 152-22 chr12 113351925 113352069 + 2 NA Intergenic L1MC4|LINE|L1 -6590 NM_001159727 196463 Hs.115896 NM_173542 ENSG00000151176 PLBD2 P76 phospholipase B domain containing 2 protein-coding 320-114 chr12 23757353 23757572 + 2 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) -172876 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 684-88 chr4 82007048 82007544 + 2 NA Intergenic Intergenic 366695 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 370-421 chr7 68076649 68076961 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 56552 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 196-55 chr12 16260961 16261105 + 2 NA intron (NM_001170798, intron 2 of 8) L1M5|LINE|L1 16652 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 223-117 chr17 33944682 33944875 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 212028 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 328-637 chrX 99016731 99016932 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 1393442 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 348-400 chr5 37957074 37957402 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 8747 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 419-211 chr4 114020606 114020936 + 2 NA Intergenic Intergenic -41124 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 411-42 chr10 110263835 110264080 + 2 NA intron (NM_005962, intron 3 of 5) intron (NM_005962, intron 3 of 5) 37961 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 377-15 chr1 106324194 106324519 + 2 NA Intergenic AluJb|SINE|Alu -296103 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 355-69 chr10 115388161 115388493 + 2 NA intron (NM_207303, intron 19 of 28) L1ME2|LINE|L1 294962 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 287-76 chr10 117868739 117868952 + 2 NA Intergenic Intergenic -177976 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 311-322 chr22 20003058 20003267 + 2 NA intron (NM_001670, intron 2 of 19) L1MB2|LINE|L1 13661 NM_001670 421 Hs.713616 NM_001670 ENSG00000099889 ARVCF - ARVCF delta catenin family member protein-coding 214-36 chr10 36155147 36155318 + 2 NA Intergenic Intergenic 376930 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 334-18 chr1 83069011 83069253 + 2 NA intron (NR_147074, intron 5 of 10) MER5A|DNA|hAT-Charlie -82924 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 303-353 chr5 34537612 34537806 + 2 NA Intergenic Intergenic -118619 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 590-178 chr9 69655373 69655821 + 2 NA intron (NM_001163, intron 1 of 12) L1M1|LINE|L1 16774 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 269-103 chr13 38059803 38060008 + 2 NA intron (NR_047500, intron 5 of 5) L1MC4|LINE|L1 83327 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 243-7 chr1 59869801 59869975 + 2 NA intron (NM_015888, intron 20 of 21) intron (NM_015888, intron 20 of 21) 54939 NM_015888 51361 Hs.378836 NM_015888 ENSG00000134709 HOOK1 HK1 hook microtubule tethering protein 1 protein-coding 490-177 chr3 19554162 19554621 + 2 NA Intergenic L1M1|LINE|L1 -239460 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 221-203 chr3 141012346 141012473 + 2 NA Intergenic Intergenic -38938 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 344-139 chr14 70493641 70493944 + 2 NA Intergenic L1MA1|LINE|L1 -10036 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 329-533 chr7 33877815 33878058 + 2 NA Intergenic Intergenic -26979 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 242-377 chr7 94875129 94875334 + 2 NA Intergenic MER31-int|LTR|ERV1 -32363 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 515-198 chr5 16184872 16185187 + 2 NA non-coding (NR_149044, exon 2 of 2) non-coding (NR_149044, exon 2 of 2) 4788 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 238-279 chr4 165923160 165923380 + 2 NA intron (NM_001204760, intron 1 of 9) intron (NM_001204760, intron 1 of 9) 50033 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 312-39 chr10 39229487 39229681 + 2 NA Intergenic ALR/Alpha|Satellite|centr 532988 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 250-393 chr7 26323297 26323481 + 2 NA intron (NM_001318199, intron 1 of 6) L2a|LINE|L2 30358 NM_001318199 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 228-302 chr6 145099114 145099311 + 2 NA Intergenic Intergenic 587665 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 457-181 chr4 99287867 99288176 + 2 NA intron (NM_000667, intron 1 of 8) intron (NM_000667, intron 1 of 8) 2964 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 495-100 chr2 7600788 7601126 + 2 NA Intergenic Intergenic 179696 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 430-296 chr7 104627317 104627707 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 176580 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 535-41 chr11 55588442 55588921 + 2 NA Intergenic Intergenic 15717 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 317-295 chr3 26011854 26012042 + 2 NA Intergenic Intergenic -138253 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 417-241 chr6 74546934 74547306 + 2 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 477669 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 206-239 chr6 90435162 90435315 + 2 NA Intergenic Intergenic 122496 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 319-144 chr14 67025292 67025474 + 2 NA intron (NM_001024218, intron 9 of 21) MER110-int|LTR|ERV1 -164057 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 235-4 chr1 19477548 19477746 + 2 NA intron (NM_001206541, intron 1 of 8) intron (NM_001206541, intron 1 of 8) 6648 NM_001282162 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 164-105 chr7 33812796 33812890 + 2 NA Intergenic L1MC1|LINE|L1 -92072 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 755-35 chr2 56536148 56536665 + 2 NA Intergenic L1MC5|LINE|L1 -350636 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 418-88 chr16 26655305 26655691 + 2 NA Intergenic L1MD2|LINE|L1 -411429 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 328-152 chr14 61144760 61145037 + 2 NA Intergenic Intergenic 136440 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 311-431 chr6 28044836 28045034 + 2 NA Intergenic Intergenic -28381 NM_001355425 442179 NM_001355425 OR1F12 OR1F12P|OR1F12Q|OR6-12|hs6M1-35P olfactory receptor family 1 subfamily F member 12 protein-coding 250-56 chr10 119575922 119576170 + 2 NA intron (NM_001323968, intron 12 of 12) intron (NM_001323968, intron 12 of 12) 20983 NM_001323965 7073 Hs.501203 NM_003252 ENSG00000151923 TIAL1 TCBP|TIAR TIA1 cytotoxic granule associated RNA binding protein like 1 protein-coding 258-434 chrX 33934669 33934895 + 2 NA Intergenic L1MA7|LINE|L1 197548 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 315-359 chr4 169378815 169379039 + 2 NA Intergenic AluJo|SINE|Alu -107971 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 235-97 chr14 38316839 38317040 + 2 NA Intergenic Intergenic -60846 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 189-66 chr16 52743775 52743889 + 2 NA Intergenic L2c|LINE|L2 -136857 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 259-229 chr20 31352996 31353175 + 2 NA Intergenic L1M5|LINE|L1 -15516 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 534-130 chr2 147446138 147446535 + 2 NA Intergenic MER51A|LTR|ERV1 -398181 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 352-500 chr7 51696986 51697320 + 2 NA Intergenic Intergenic -303897 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 391-351 chr8 80265240 80265518 + 2 NA Intergenic Intergenic 23990 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 255-182 chr2 3904735 3904930 + 2 NA Intergenic Intergenic 69200 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 422-56 chr12 22038531 22038862 + 2 NA Intergenic Intergenic -7478 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 524-286 chrX 27853520 27853907 + 2 NA Intergenic Intergenic 45723 NM_182506 139422 Hs.447363 NM_182506 ENSG00000177689 MAGEB10 - MAGE family member B10 protein-coding 282-158 chr16 80352180 80352407 + 2 NA intron (NR_120307, intron 2 of 5) L1ME4a|LINE|L1 -188441 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 237-354 chr7 55037414 55037565 + 2 NA intron (NM_001346941, intron 1 of 21) intron (NM_001346941, intron 1 of 21) 18457 NM_201283 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 423-52 chr11 121815192 121815565 + 2 NA Intergenic Intergenic 284466 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 331-49 chr10 59605087 59605381 + 2 NA Intergenic L3b|LINE|CR1 104657 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 395-333 chr8 70414897 70415169 + 2 NA Intergenic AluJo|SINE|Alu -10816 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 310-436 chr5 164431630 164431935 + 2 NA Intergenic Intergenic 35620 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 229-192 chr2 114175580 114175735 + 2 NA Intergenic L2b|LINE|L2 -195673 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 290-358 chr5 110380902 110381073 + 2 NA Intergenic L1MC2|LINE|L1 132928 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 433-301 chr9 79511445 79511762 + 2 NA Intergenic L1ME3|LINE|L1 -60170 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 548-149 chr3 87747156 87747602 + 2 NA Intergenic Intergenic -45327 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 210-74 chr14 62001292 62001432 + 2 NA intron (NM_001367661, intron 4 of 8) L1MCc|LINE|L1 73667 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 766-19 chr13 89548503 89549198 + 2 NA TTS (NR_046991) TTS (NR_046991) 15563 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 524-113 chr2 71803739 71804206 + 2 NA Intergenic Intergenic 337273 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 359-492 chr8 130757459 130757712 + 2 NA Intergenic Intergenic 283324 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 422-193 chr3 112298557 112298877 + 2 NA Intergenic L1M1|LINE|L1 -3761 NR_147411 105374042 Hs.436357 NR_147411 ENSG00000239482 LOC105374042 - uncharacterized LOC105374042 ncRNA 371-270 chr4 44173571 44173827 + 2 NA TTS (NM_198353) TTS (NM_198353) 156637 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 207-316 chr9 103351499 103351636 + 2 NA Intergenic L1MB8|LINE|L1 -26534 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 631-57 chr2 15069449 15069986 + 2 NA Intergenic Intergenic 437000 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 491-127 chr2 121188847 121189209 + 2 NA Intergenic Intergenic 96174 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 428-37 chr11 55835413 55835669 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -3211 NM_001005496 390144 Hs.554527 NM_001005496 ENSG00000205029 OR5D16 OR11-154 olfactory receptor family 5 subfamily D member 16 protein-coding 446-315 chr8 131591206 131591627 + 2 NA Intergenic Intergenic -312677 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 340-399 chr4 56583354 56583581 + 2 NA intron (NM_001256475, intron 5 of 8) L1MB7|LINE|L1 52861 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 348-268 chr20 52511185 52511478 + 2 NA Intergenic Intergenic -109507 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 260-18 chr1 111147943 111148138 + 2 NA non-coding (NR_138483, exon 2 of 10) non-coding (NR_138483, exon 2 of 10) 7817 NR_138483 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 723-82 chr9 96713747 96714318 + 2 NA Intergenic MER65C|LTR|ERV1 -11789 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 817-52 chr8 64961721 64962305 + 2 NA Intergenic L1MB3|LINE|L1 -163276 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 324-249 chr2 32767958 32768232 + 2 NA intron (NM_017735, intron 13 of 19) BLACKJACK|DNA|hAT-Blackjack -57338 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 462-192 chr4 158459 158760 + 2 NA intron (NR_110527, intron 3 of 4) L1MB2|LINE|L1 30488 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 345-213 chr18 5362078 5362329 + 2 NA Intergenic L1PA8|LINE|L1 -65150 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 220-229 chr3 76608211 76608357 + 2 NA Intergenic Intergenic -431815 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 142-29 chr16 6859209 6859314 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 85452 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 588-146 chr7 62768415 62768778 + 2 NA Intergenic ALR/Alpha|Satellite|centr 535460 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 493-45 chr11 54808583 54808988 + 2 NA Intergenic ALR/Alpha|Satellite|centr 101953 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 502-46 chr11 30113813 30114150 + 2 NA Intergenic Intergenic -96951 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 335-150 chr14 22861348 22861537 + 2 NA Intergenic AluSp|SINE|Alu -10298 NM_001329226 26020 Hs.525232 NM_014045 ENSG00000197324 LRP10 LRP-10|LRP9|MST087|MSTP087 LDL receptor related protein 10 protein-coding 569-189 chr9 113049675 113050098 + 2 NA exon (NM_001282515, exon 2 of 4) exon (NM_001282515, exon 2 of 4) 6838 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 223-307 chr6 133330813 133330965 + 2 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 89390 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 273-230 chr2 117218343 117218581 + 2 NA Intergenic Intergenic -596229 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 348-302 chr3 84114275 84114460 + 2 NA Intergenic Intergenic 755208 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 501-84 chr18 6423964 6424339 + 2 NA Intergenic Intergenic -8892 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 498-170 chr3 67885700 67886028 + 2 NA intron (NR_109992, intron 5 of 6) intron (NR_109992, intron 5 of 6) -105728 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 436-118 chr19 11674851 11675259 + 2 NA intron (NR_028594, intron 1 of 2) intron (NR_028594, intron 1 of 2) 1057 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 333-422 chr4 178625225 178625541 + 2 NA Intergenic L1MCa|LINE|L1 -717447 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 303-262 chr21 21840860 21841063 + 2 NA Intergenic Intergenic 93976 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 318-14 chr1 59376305 59376474 + 2 NA intron (NM_001350794, intron 4 of 14) intron (NM_001350794, intron 4 of 14) 66357 NM_001350790 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 222-73 chr11 90540122 90540311 + 2 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 15641 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 290-206 chr2 63187071 63187340 + 2 NA intron (NR_148705, intron 13 of 16) L1MB2|LINE|L1 -67663 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 341-298 chr20 42919633 42919838 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -49008 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 273-444 chr8 66000895 66001085 + 2 NA Intergenic Intergenic -13988 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 329-205 chr16 62799650 62799822 + 2 NA Intergenic Intergenic -763298 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 314-159 chr14 30831854 30832047 + 2 NA Intergenic L1MC4a|LINE|L1 -42585 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 534-87 chr17 8905545 8906057 + 2 NA intron (NM_001142633, intron 3 of 18) intron (NM_001142633, intron 3 of 18) 6716 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 333-580 chr8 109635046 109635236 + 2 NA intron (NM_001099746, intron 1 of 5) L2c|LINE|L2 8049 NM_001099756 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 496-309 chrX 69467973 69468279 + 2 NA Intergenic MamRep605|LTR?|LTR? -37109 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 722-68 chr6 140191583 140192210 + 2 NA Intergenic MER41-int|LTR|ERV1 -13356 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 358-266 chr20 56838373 56838561 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 209161 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 347-530 chr8 132260899 132261106 + 2 NA intron (NM_004519, intron 1 of 14) L1MB7|LINE|L1 -155737 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 238-173 chr2 65361318 65361497 + 2 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) 5371 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 583-175 chr9 119831954 119832397 + 2 NA Intergenic Intergenic -102885 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 661-43 chr19 53637639 53638245 + 2 NA TTS (NM_001012728) TTS (NM_001012728) 5886 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 564-133 chr3 123870775 123871146 + 2 NA intron (NM_001321309, intron 2 of 32) intron (NM_001321309, intron 2 of 32) 13372 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 159-47 chr2 157579200 157579326 + 2 NA intron (NM_001111031, intron 2 of 8) L1MEd|LINE|L1 18297 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 341-460 chr6 40414068 40414305 + 2 NA intron (NM_020737, intron 2 of 2) MIRb|SINE|MIR 35849 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 376-38 chr10 21107198 21107414 + 2 NA intron (NM_001173484, intron 2 of 6) L1PA6|LINE|L1 -66684 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 315-442 chr7 52464624 52464813 + 2 NA Intergenic Intergenic -570915 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 352-328 chr3 107881033 107881313 + 2 NA Intergenic Intergenic -2032 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 321-567 chr8 116028037 116028247 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 296917 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 421-309 chr8 128292817 128293152 + 2 NA Intergenic Intergenic 142868 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 305-34 chr1 175633453 175633674 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 110032 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 336-603 chrX 97544067 97544343 + 2 NA intron (NR_125391, intron 1 of 2) intron (NR_125391, intron 1 of 2) 20330 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 634-47 chr12 115025380 115025950 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -341490 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 461-277 chr8 126670176 126670466 + 2 NA Intergenic Intergenic -111843 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 410-166 chr20 51050612 51050870 + 2 NA Intergenic Intergenic -27634 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 330-250 chr2 28463292 28463586 + 2 NA Intergenic L1MEf|LINE|L1 -32621 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 222-184 chr2 125595447 125595613 + 2 NA Intergenic Intergenic 522455 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 336-235 chr19 6935355 6935636 + 2 NA intron (NM_001974, intron 18 of 20) L1ME4a|LINE|L1 47916 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 290-444 chr8 74115207 74115396 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 123909 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 548-36 chr11 71179408 71179798 + 2 NA intron (NM_012309, intron 1 of 24) L1M4|LINE|L1 45193 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 315-168 chr16 48114757 48114987 + 2 NA intron (NM_033226, intron 13 of 28) intron (NM_033226, intron 13 of 28) 31898 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 271-96 chr12 38577409 38577629 + 2 NA Intergenic L1MA1|LINE|L1 260745 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 223-193 chr21 33535045 33535188 + 2 NA intron (NM_175085, intron 3 of 10) intron (NM_175085, intron 3 of 10) 7001 NM_000819 2618 Hs.473648 NM_000819 ENSG00000159131 GART AIRS|GARS|GARTF|PAIS|PGFT|PRGS phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase protein-coding 559-45 chr14 49192543 49192950 + 2 NA Intergenic Intergenic 393634 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 670-23 chr11 91959451 91960004 + 2 NA Intergenic L1PB1|LINE|L1 -265307 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 288-4 chr1 25043606 25043805 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 20202 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 370-262 chr2 222212013 222212331 + 2 NA intron (NM_181457, intron 7 of 7) intron (NM_181457, intron 7 of 7) -85975 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 704-22 chr13 70080374 70081015 + 2 NA intron (NM_020866, intron 1 of 10) AluSz|SINE|Alu -26519 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 689-89 chr6 139556227 139556653 + 2 NA Intergenic Intergenic -81844 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 288-44 chr10 37242674 37242894 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -66402 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 209 chr1 34539589 34539749 + 2 NA Intergenic L1MB8|LINE|L1 130025 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 516-165 chr3 13541787 13542239 + 2 NA Intergenic L1M5|LINE|L1 -7112 NM_001998 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 695-2 chr1 57366285 57366687 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 56626 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 359-147 chr14 72310987 72311331 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -205661 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 365-233 chr20 39304249 39304486 + 2 NA Intergenic Intergenic -79619 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 369-155 chr17 34119166 34119382 + 2 NA intron (NM_001094, intron 1 of 9) MIRc|SINE|MIR 37532 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 342-390 chr5 30018882 30019195 + 2 NA Intergenic L1MA10|LINE|L1 138478 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 251-313 chr5 118527083 118527260 + 2 NA intron (NR_104610, intron 1 of 9) intron (NR_104610, intron 1 of 9) 34946 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 158-64 chr2 222637280 222637400 + 2 NA intron (NR_130154, intron 6 of 17) L1MEc|LINE|L1 18752 NM_005687 10056 Hs.471452 NM_005687 ENSG00000116120 FARSB FARSLB|FRSB|HSPC173|NEDBLLA|PheHB|PheRS|RILDBC phenylalanyl-tRNA synthetase subunit beta protein-coding 565-52 chr15 97715931 97716287 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -155411 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 530-92 chr16 64832112 64832532 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 289741 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 141-57 chr3 84625294 84625400 + 2 NA Intergenic Intergenic 244228 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 256-440 chr8 138333357 138333606 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 163780 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 293-70 chr11 100004866 100005124 + 2 NA intron (NM_001243270, intron 8 of 23) LTR33|LTR|ERVL 448850 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 250-13 chr1 88425771 88425974 + 2 NA Intergenic L1MA4A|LINE|L1 -258272 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 144-42 chr2 31673043 31673131 + 2 NA Intergenic L1PB3|LINE|L1 -92149 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 418-205 chr5 7201590 7201868 + 2 NA Intergenic Intergenic 67625 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 473-116 chr18 79418908 79419218 + 2 NA intron (NM_001278672, intron 2 of 8) AluJr|SINE|Alu 18764 NM_172389 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 259-102 chr13 90423938 90424119 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -69260 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 347-226 chr2 79562144 79562361 + 2 NA intron (NM_001282598, intron 1 of 17) L1MB7|LINE|L1 39069 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 473-20 chr1 209013194 209013526 + 2 NA Intergenic Intergenic 40906 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 219-278 chr5 30568989 30569171 + 2 NA Intergenic L2a|LINE|L2 -624606 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 386-139 chr18 12311212 12311435 + 2 NA intron (NM_001303525, intron 3 of 3) AluSc8|SINE|Alu 3082 NM_001303528 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 511-184 chr4 12147252 12147616 + 2 NA Intergenic Intergenic -76017 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 216-322 chr7 52466211 52466415 + 2 NA Intergenic HERV16-int|LTR|ERVL -569320 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 488-55 chr11 105140385 105140816 + 2 NA promoter-TSS (NM_021571) promoter-TSS (NM_021571) -831 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 680-10 chr1 191793068 191793699 + 2 NA Intergenic L1MB2|LINE|L1 -365079 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 363-127 chr14 26143577 26143806 + 2 NA Intergenic AluSc|SINE|Alu 409739 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 486-197 chr3 16095949 16096281 + 2 NA Intergenic Intergenic -78565 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 489-32 chr10 95047007 95047431 + 2 NA intron (NM_001198855, intron 6 of 9) MSTA|LTR|ERVL-MaLR 22278 NM_001198855 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 462-32 chr10 83298645 83299029 + 2 NA Intergenic L1ME3Cz|LINE|L1 378252 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 240-122 chr13 80470964 80471153 + 2 NA Intergenic MIR|SINE|MIR -129932 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 384-193 chr2 220479454 220479757 + 2 NA Intergenic Intergenic -573040 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 245-294 chr5 145076705 145076943 + 2 NA Intergenic Intergenic 758518 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 473-208 chr5 15016857 15017173 + 2 NA Intergenic MER45C|DNA|hAT-Tip100 -145237 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 313-69 chr10 126509756 126509955 + 2 NA intron (NM_001004298, intron 2 of 8) MLT1B|LTR|ERVL-MaLR 11638 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 358-168 chr18 26694129 26694336 + 2 NA intron (NR_024259, intron 1 of 1) L1M3|LINE|L1 9406 NR_024259 728606 Hs.170599 NR_024259 ENSG00000265369 PCAT18 LINC01092 prostate cancer associated transcript 18 ncRNA 217-166 chr2 8010043 8010194 + 2 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -33304 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 150-54 chr2 178876930 178877028 + 2 NA 3' UTR (NM_001316745, exon 12 of 12) 3' UTR (NM_001316745, exon 12 of 12) -69556 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 244-11 chr1 80300922 80301099 + 2 NA Intergenic (ATAC)n|Simple_repeat|Simple_repeat -234745 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 396-236 chr3 162192267 162192551 + 2 NA Intergenic Intergenic 695601 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 282-284 chr22 48279548 48279744 + 2 NA Intergenic Intergenic 5282 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 370-300 chr3 2173152 2173422 + 2 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -29046 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 158-15 chr10 66229245 66229332 + 2 NA intron (NM_001127384, intron 13 of 17) L1MA5|LINE|L1 657863 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 142-42 chr2 188086235 188086344 + 2 NA intron (NR_126396, intron 2 of 2) L1MD2|LINE|L1 201402 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 942-4 chr1 218023500 218024080 + 2 NA Intergenic MIRc|SINE|MIR -19715 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 398-109 chr14 71012868 71013212 + 2 NA exon (NM_001308160, exon 9 of 34) exon (NM_001308160, exon 9 of 34) 105581 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 273-16 chr1 95518816 95519025 + 2 NA Intergenic Intergenic 8804 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 326-200 chr17 74582816 74583071 + 2 NA intron (NM_001115152, intron 2 of 3) intron (NM_001115152, intron 2 of 3) -1736 NM_001302809 146723 Hs.350775 NM_152460 C17orf77 - chromosome 17 open reading frame 77 protein-coding 512-109 chr18 77869604 77869950 + 2 NA Intergenic Intergenic 123950 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 299-34 chr1 229935365 229935597 + 2 NA Intergenic L1ME1|LINE|L1 -41573 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 166-50 chr2 65605900 65605998 + 2 NA Intergenic L1MB2|LINE|L1 -173350 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 407-215 chr4 26364300 26364604 + 2 NA intron (NM_203284, intron 2 of 11) intron (NM_203284, intron 2 of 11) 43224 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 512-114 chr2 7942671 7943163 + 2 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) 33897 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 694-112 chr6 80698362 80698743 + 2 NA Intergenic Intergenic 591881 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 450-40 chr10 116589548 116589946 + 2 NA Intergenic Intergenic -1212 NM_006229 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 348-367 chr4 81116544 81116791 + 2 NA intron (NM_006259, intron 14 of 18) L1PA15|LINE|L1 37490 NM_001282482 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 487-221 chr5 4799401 4799745 + 2 NA Intergenic Intergenic 26092 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 377-404 chr8 91273375 91273659 + 2 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 24198 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 651-24 chr11 62260042 62260596 + 2 NA Intergenic MER41D|LTR|ERV1 -9839 NM_002411 4250 Hs.46452 NM_002411 ENSG00000110484 SCGB2A2 MGB1|UGB2 secretoglobin family 2A member 2 protein-coding 119-4 chr1 117372341 117372425 + 2 NA intron (NM_006699, intron 1 of 12) L2c|LINE|L2 4934 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 477-213 chr3 170090572 170090933 + 2 NA 3' UTR (NM_001308116, exon 15 of 15) 3' UTR (NM_001308116, exon 15 of 15) 52757 NM_014373 26996 Hs.231320 NM_014373 ENSG00000173890 GPR160 GPCR1|GPCR150 G protein-coupled receptor 160 protein-coding 331-494 chr7 51994643 51994875 + 2 NA Intergenic L1PA16|LINE|L1 -601503 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 306-352 chr4 53101716 53101899 + 2 NA intron (NM_152540, intron 5 of 8) L1MC3|LINE|L1 239490 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 310-124 chr14 26076101 26076373 + 2 NA Intergenic Intergenic 477193 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 444-69 chr14 82527196 82527633 + 2 NA Intergenic Intergenic -115218 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 333-381 chr4 30336103 30336405 + 2 NA Intergenic MER21B|LTR|ERVL -384115 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 317-127 chr13 83365629 83365832 + 2 NA Intergenic L1MEd|LINE|L1 516663 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 217-179 chr2 103403635 103403838 + 2 NA Intergenic LTR7|LTR|ERV1 -419307 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 251-147 chr19 35490626 35490778 + 2 NA promoter-TSS (NM_001244847) promoter-TSS (NM_001244847) -238 NM_001244847 388533 Hs.112457 NM_207392 ENSG00000188508 KRTDAP KDAP|UNQ467 keratinocyte differentiation associated protein protein-coding 323-550 chr8 86197232 86197448 + 2 NA Intergenic L1MB3|LINE|L1 33041 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 321-446 chr5 3510028 3510269 + 2 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) -6144 NR_104618 102467075 Hs.652949 NR_104618 ENSG00000250716 LINC01017 - long intergenic non-protein coding RNA 1017 ncRNA 393-117 chr16 59504526 59504783 + 2 NA Intergenic Intergenic 250537 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 272-171 chr2 7273500 7273719 + 2 NA Intergenic L1MC4|LINE|L1 -147652 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 392-4 chr1 90712742 90712954 + 2 NA intron (NM_020063, intron 2 of 2) intron (NM_020063, intron 2 of 2) 4454 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 450-235 chr5 19786805 19787141 + 2 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 99299 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 623-130 chr8 138256256 138256820 + 2 NA intron (NM_015912, intron 5 of 19) intron (NM_015912, intron 5 of 19) -172993 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 302-405 chr7 23706047 23706269 + 2 NA Intergenic L1ME1|LINE|L1 -4061 NM_031414 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 479-220 chr6 119840947 119841260 + 2 NA intron (NR_134600, intron 2 of 3) L1M2|LINE|L1 -174076 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 275-10 chr1 105328782 105329017 + 2 NA Intergenic Intergenic 290036 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 270-112 chr14 69314909 69315127 + 2 NA intron (NM_020692, intron 1 of 15) intron (NM_020692, intron 1 of 15) 54860 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 482-132 chr2 150307618 150308038 + 2 NA Intergenic Intergenic -50821 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 238-25 chr1 199131513 199131681 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -17001 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 217-314 chr5 150884072 150884276 + 2 NA intron (NM_001346557, intron 3 of 3) L1M1|LINE|L1 20809 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 580-99 chr20 41198810 41199338 + 2 NA intron (NM_015035, intron 3 of 3) L1M4|LINE|L1 30051 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 251-237 chr3 95727511 95727714 + 2 NA Intergenic Intergenic -44419 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 374-152 chr18 10298305 10298622 + 2 NA Intergenic Intergenic 115907 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 454-96 chr14 83340742 83341120 + 2 NA Intergenic Intergenic 698299 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 343-123 chr13 44812385 44812692 + 2 NA Intergenic HAL1|LINE|L1 -2908 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 684-129 chr9 71623340 71623930 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 144878 NM_001349784 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 217-162 chr18 76110528 76110709 + 2 NA Intergenic Intergenic -12380 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 469-228 chr5 153717276 153717718 + 2 NA intron (NM_000827, intron 11 of 15) intron (NM_000827, intron 11 of 15) 181490 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 399-127 chr19 34623999 34624336 + 2 NA intron (NR_027620, intron 1 of 3) LTR25-int|LTR|ERV1 -21706 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 378-370 chr6 51094745 51094982 + 2 NA Intergenic L1MA10|LINE|L1 275992 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 304-151 chr14 84141098 84141292 + 2 NA Intergenic Intergenic -1130737 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 250-423 chr8 72132300 72132517 + 2 NA Intergenic Intergenic -56824 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 188-119 chr22 26380006 26380127 + 2 NA intron (NM_001184776, intron 14 of 14) intron (NM_001184776, intron 14 of 14) -49194 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 343-165 chr15 84847550 84847741 + 2 NA intron (NM_020778, intron 5 of 13) L1MEf|LINE|L1 30965 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 311-87 chr11 100101548 100101798 + 2 NA intron (NM_001243270, intron 12 of 23) L1PB2|LINE|L1 545528 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 864-35 chr5 104129964 104130458 + 2 NA Intergenic Intergenic -567422 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 376-131 chr16 56179666 56179965 + 2 NA intron (NR_027078, intron 2 of 4) L1MB3|LINE|L1 11279 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 417-65 chr12 116654073 116654351 + 2 NA Intergenic AluJo|SINE|Alu 83857 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 583-108 chr22 34957974 34958534 + 2 NA intron (NR_138042, intron 1 of 4) AluY|SINE|Alu 39662 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 302-196 chr2 15948797 15948977 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -6454 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 426-99 chr16 64345562 64345848 + 2 NA Intergenic MER52A|LTR|ERV1 776358 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 222-45 chr10 81886479 81886644 + 2 NA intron (NR_163252, intron 1 of 8) Tigger13a|DNA|TcMar-Tigger 8874 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 237-12 chr1 99584036 99584266 + 2 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -61962 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 371-233 chr22 46264089 46264332 + 2 NA promoter-TSS (NM_006071) promoter-TSS (NM_006071) -867 NM_006071 10343 Hs.241383 NM_006071 ENSG00000130943 PKDREJ - polycystin family receptor for egg jelly protein-coding 297-528 chrX 98965582 98965810 + 2 NA Intergenic Intergenic -1401161 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 344-157 chr15 79141275 79141477 + 2 NA Intergenic Intergenic -50596 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 215-181 chr21 35605759 35605927 + 2 NA Intergenic Intergenic -25079 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 427-137 chr20 54422394 54422702 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -53045 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 520-121 chr17 71253886 71254319 + 2 NA Intergenic MER8|DNA|TcMar-Tigger -51923 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 329-392 chr3 191887081 191887286 + 2 NA Intergenic Intergenic -351447 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 143-47 chr2 164474474 164474545 + 2 NA Intergenic Intergenic 93986 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 320-250 chr2 13694692 13694983 + 2 NA Intergenic Intergenic -687824 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 267-211 chr2 153416984 153417184 + 2 NA Intergenic L2a|LINE|L2 61678 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 398-310 chr6 154610725 154611056 + 2 NA Intergenic Intergenic -100205 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 635-13 chr10 37595778 37596282 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 6901 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 367-158 chr17 20186802 20187097 + 2 NA intron (NM_001033554, intron 1 of 5) intron (NM_001033554, intron 1 of 5) 30877 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 351-491 chr8 99295029 99295318 + 2 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 241557 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 906-26 chr5 167433444 167434041 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -139917 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 427-35 chr10 124365626 124365874 + 2 NA Intergenic L2|LINE|L2 53173 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 448-19 chr1 186344847 186345209 + 2 NA intron (NM_003292, intron 24 of 50) L1ME3F|LINE|L1 30225 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 321-447 chr5 8469872 8470142 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 9082 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 401-212 chr3 103821316 103821651 + 2 NA Intergenic Intergenic -297367 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 209-122 chr17 12326187 12326353 + 2 NA Intergenic L1ME3B|LINE|L1 -223698 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 388-99 chr14 20670457 20670787 + 2 NA Intergenic L1MD|LINE|L1 -13555 NM_001145 283 Hs.283749 NM_001145 ENSG00000214274 ANG ALS9|HEL168|RAA1|RNASE4|RNASE5 angiogenin protein-coding 336-476 chr5 171539089 171539355 + 2 NA Intergenic Intergenic 119575 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 278-166 chr18 1791304 1791487 + 2 NA Intergenic Intergenic -431766 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 401-269 chr5 143764971 143765216 + 2 NA Intergenic Intergenic -47068 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 509-261 chr8 125941041 125941534 + 2 NA non-coding (NR_038446, exon 2 of 2) non-coding (NR_038446, exon 2 of 2) 9910 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 385-31 chr10 54503361 54503636 + 2 NA intron (NR_134503, intron 1 of 5) intron (NR_134503, intron 1 of 5) 17268 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 403-340 chrX 99893558 99893872 + 2 NA Intergenic L1MA10|LINE|L1 516558 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 401-232 chr4 87757055 87757298 + 2 NA Intergenic L1ME3G|LINE|L1 -42378 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 512-41 chr10 67470494 67470870 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -67272 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 250-15 chr1 107169915 107170084 + 2 NA intron (NM_001113226, intron 1 of 6) MLT2C1|LTR|ERVL 21930 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 292-264 chr21 30320301 30320524 + 2 NA promoter-TSS (NM_203405) promoter-TSS (NM_203405) -97 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 438-173 chr3 103810519 103810865 + 2 NA Intergenic L1P4|LINE|L1 -286576 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 452-131 chr2 113036563 113036962 + 2 NA intron (NM_173178, intron 1 of 4) intron (NM_173178, intron 1 of 4) 16105 NM_173178 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 387-376 chr8 135925972 135926183 + 2 NA Intergenic Intergenic 468621 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 358-251 chr20 13370306 13370577 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -130754 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 307-487 chr8 110793936 110794104 + 2 NA Intergenic MER21A|LTR|ERVL 233413 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 445-185 chr4 28852006 28852280 + 2 NA Intergenic L1PA5|LINE|L1 32561 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 953-29 chr7 50062032 50062651 + 2 NA intron (NM_007009, intron 3 of 7) L1P4e|LINE|L1 30905 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 277-450 chr9 98891861 98892049 + 2 NA Intergenic Intergenic -51952 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 330-411 chr5 32729355 32729610 + 2 NA intron (NM_001363652, intron 2 of 7) L1MC4a|LINE|L1 18161 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 367-490 chrX 84434189 84434533 + 2 NA intron (NM_001177478, intron 4 of 9) L1MA5A|LINE|L1 68092 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 253-320 chr5 26811076 26811270 + 2 NA Intergenic MIRb|SINE|MIR 227413 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 364-358 chr5 115740808 115741129 + 2 NA Intergenic L1M1|LINE|L1 -68316 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 523-280 chr8 137976626 137977067 + 2 NA intron (NR_161374, intron 2 of 7) AluSc|SINE|Alu 106699 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 271-59 chr10 115811448 115811698 + 2 NA intron (NM_207303, intron 27 of 28) L1MEc|LINE|L1 383216 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 905-21 chr20 60579228 60579716 + 2 NA Intergenic MER4D1|LTR|ERV1 14910 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 430-269 chr6 120427958 120428199 + 2 NA Intergenic Intergenic 412899 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 617-6 chr1 196732305 196732813 + 2 NA intron (NM_000186, intron 15 of 21) L1M3de|LINE|L1 -42241 NM_001166624 10878 Hs.709217 NM_021023 ENSG00000116785 CFHR3 CFHL3|DOWN16|FHR-3|FHR3|HLF4 complement factor H related 3 protein-coding 437-107 chr18 7212803 7213189 + 2 NA Intergenic Intergenic -18108 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 320-78 chr11 33485309 33485502 + 2 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 109297 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 286-41 chr10 46515613 46515819 + 2 NA Intergenic Intergenic 40355 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 423-120 chr2 4376615 4376928 + 2 NA Intergenic LTR49-int|LTR|ERV1 279451 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 222-244 chr3 105450405 105450550 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 83568 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 740-30 chr16 51638837 51639341 + 2 NA Intergenic Intergenic -123430 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 477-60 chr11 70930257 70930634 + 2 NA intron (NM_012309, intron 9 of 24) MLT1I|LTR|ERVL-MaLR -58077 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 248-207 chr2 185923446 185923626 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -123385 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 383-250 chr3 72260548 72260856 + 2 NA Intergenic Intergenic 109445 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 187-188 chr9 85983357 85983499 + 2 NA intron (NM_024635, intron 11 of 22) HAL1|LINE|L1 41899 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 637-96 chr5 136497521 136497899 + 2 NA Intergenic L1PB1|LINE|L1 -132234 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 358-32 chr10 4582179 4582387 + 2 NA Intergenic L1M5|LINE|L1 -73873 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 497-100 chr18 24807874 24808195 + 2 NA Intergenic L1MCa|LINE|L1 82253 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 365-285 chr4 38296825 38297169 + 2 NA Intergenic AluY|SINE|Alu -69917 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 447-174 chr3 76229321 76229747 + 2 NA Intergenic Intergenic -443985 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 561-57 chr13 58432656 58433152 + 2 NA Intergenic MIR3|SINE|MIR -199787 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 318-228 chr19 16980242 16980413 + 2 NA intron (NM_015692, intron 14 of 41) intron (NM_015692, intron 14 of 41) 46483 NM_015692 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 340-97 chr12 7056402 7056598 + 2 NA Intergenic Intergenic -4218 NM_001734 716 Hs.458355 NM_001734 ENSG00000182326 C1S EDSPD2 complement C1s protein-coding 236-108 chr14 23872869 23873062 + 2 NA Intergenic AluSx|SINE|Alu -80805 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 534-14 chr1 181607058 181607561 + 2 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 123792 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 375-298 chr4 97080445 97080730 + 2 NA Intergenic L1PA16|LINE|L1 -286339 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 374-186 chr2 77307961 77308313 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 214239 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 341-423 chr5 18219834 18220090 + 2 NA Intergenic Intergenic 412688 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 373-223 chr2 184415852 184416110 + 2 NA Intergenic Intergenic 37006 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 314-191 chr15 62769313 62769550 + 2 NA intron (NM_015059, intron 38 of 55) MER91A|DNA|hAT-Tip100 -54526 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 432-79 chr14 44373095 44373524 + 2 NA Intergenic Intergenic 133974 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 727-21 chr12 30863389 30863968 + 2 NA Intergenic Intergenic -63070 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 355-80 chr11 14622933 14623227 + 2 NA intron (NM_148976, intron 1 of 10) ERV3-16A3_I-int|LTR|ERVL 20554 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 456-37 chr10 76585174 76585562 + 2 NA Intergenic L1ME3Cz|LINE|L1 -302676 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 251-215 chr21 43200419 43200568 + 2 NA Intergenic MER31B|LTR|ERV1 30257 NM_001320719 102724652 Hs.184085 NM_001314050 ENSG00000276076 CRYAA2 CRYAA crystallin alpha A2 protein-coding 455-241 chr6 62899495 62899850 + 2 NA Intergenic Intergenic 420305 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 365-143 chr16 68499902 68500183 + 2 NA Intergenic Intergenic -39171 NM_001305204 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 195-157 chr4 18963880 18963984 + 2 NA Intergenic Intergenic -942057 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 298-470 chr8 119151572 119151790 + 2 NA Intergenic L2|LINE|L2 -56682 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 340-135 chr13 92884741 92884916 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -160513 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 347-555 chr9 91802690 91802953 + 2 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 147407 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 379-30 chr1 227696692 227696930 + 2 NA TTS (NR_036753) TTS (NR_036753) 896 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 272-435 chr8 20990912 20991145 + 2 NA intron (NR_033894, intron 3 of 4) L1MA2|LINE|L1 17042 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 602-9 chr10 58090456 58090892 + 2 NA Intergenic Intergenic 177220 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 186-103 chr3 7268990 7269166 + 2 NA intron (NM_000844, intron 2 of 9) LTR37A|LTR|ERV1 266206 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 574-149 chr6 41359453 41359866 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 24051 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 265-165 chr19 56412809 56412941 + 2 NA intron (NM_001159860, intron 2 of 4) intron (NM_001159860, intron 2 of 4) 8543 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 547-181 chr5 43936927 43937364 + 2 NA Intergenic L1MA1|LINE|L1 -333915 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 406-106 chr16 79280589 79280938 + 2 NA Intergenic LTR16A1|LTR|ERVL 319974 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 329-17 chr1 110793675 110793902 + 2 NA Intergenic L1PA16|LINE|L1 -77411 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 807-48 chr9 81450449 81451086 + 2 NA Intergenic Intergenic 238768 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 602-115 chr6 52732957 52733439 + 2 NA Intergenic Intergenic 11961 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 383-87 chr12 112587089 112587298 + 2 NA intron (NM_001347952, intron 1 of 21) L1M5|LINE|L1 11957 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 287-225 chr20 31380008 31380254 + 2 NA intron (NR_073153, intron 1 of 2) L1MD2|LINE|L1 10459 NM_001271209 245932 Hs.516998 NM_153289 ENSG00000180483 DEFB119 DEFB-19|DEFB-20|DEFB120|DEFB20|ESC42-RELA|ESC42-RELB defensin beta 119 protein-coding 422-255 chr6 40751441 40751685 + 2 NA Intergenic Intergenic -164199 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 391-316 chr6 156572300 156572579 + 2 NA Intergenic Intergenic 193689 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 533 chr1 34241271 34241630 + 2 NA Intergenic AluSz6|SINE|Alu 64543 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 163-43 chr13 100370431 100370564 + 2 NA intron (NR_148027, intron 20 of 23) intron (NR_148027, intron 20 of 23) 110518 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 402-100 chr15 91764363 91764699 + 2 NA Intergenic Intergenic -89177 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 383-206 chr2 184912934 184913152 + 2 NA intron (NM_194250, intron 2 of 3) L1MD3|LINE|L1 254029 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 250-267 chr3 17584076 17584247 + 2 NA intron (NM_001349089, intron 1 of 20) L1MB5|LINE|L1 115859 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 273-59 chr10 82763599 82763823 + 2 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -530791 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 295-229 chr2 150597062 150597249 + 2 NA Intergenic Intergenic -24934 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 381-130 chr16 78974097 78974403 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 626487 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 568-38 chr12 77069420 77069954 + 2 NA Intergenic Intergenic -4118 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 297-81 chr11 80768221 80768506 + 2 NA Intergenic L1PA15|LINE|L1 -5560 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 328-576 chr8 122313525 122313741 + 2 NA Intergenic LTR16|LTR|ERVL 255011 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 338-509 chr7 77834622 77834874 + 2 NA intron (NM_001366088, intron 1 of 11) MIR3|SINE|MIR -5380 NM_020432 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 370-316 chr3 112749639 112749955 + 2 NA promoter-TSS (NR_110017) promoter-TSS (NR_110017) -478 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 603-173 chr8 139683133 139683520 + 2 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 19797 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 393-388 chr9 118263880 118264106 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -415678 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 309-571 chr8 141533275 141533461 + 2 NA Intergenic L2c|LINE|L2 -26138 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 309-559 chr8 122647940 122648151 + 2 NA Intergenic Intergenic 46061 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 378-4 chr1 37108447 37108806 + 2 NA Intergenic Intergenic -52937 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 280-379 chr7 47222776 47223025 + 2 NA Intergenic L1MB7|LINE|L1 241903 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 276-47 chr10 26378443 26378692 + 2 NA Intergenic Intergenic -59774 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 275-299 chr5 140076322 140076550 + 2 NA Intergenic Intergenic 31576 NR_102740 100505636 Hs.438871 NR_102739 ENSG00000245146 MALINC1 LINC01024|MA-linc1 mitosis associated long intergenic non-coding RNA 1 ncRNA 228-276 chr5 127845546 127845745 + 2 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 142256 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 534-125 chr2 124961311 124961701 + 2 NA Intergenic L1MD1|LINE|L1 936219 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 310-111 chr13 37237164 37237459 + 2 NA Intergenic L1ME4c|LINE|L1 -131647 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 319-156 chr14 97846657 97846838 + 2 NA Intergenic Intergenic -83916 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 422-225 chr4 187223711 187223975 + 2 NA Intergenic Intergenic 21857 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 316-492 chr6 129780174 129780421 + 2 NA Intergenic L1MEd|LINE|L1 -70120 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 239-49 chr10 112529708 112529907 + 2 NA intron (NM_001365710, intron 4 of 7) intron (NM_001365710, intron 4 of 7) -82204 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 320-257 chr2 54237683 54237846 + 2 NA intron (NM_138448, intron 3 of 3) L1MEg|LINE|L1 18465 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 465-149 chr2 225725151 225725508 + 2 NA Intergenic Intergenic 324443 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 277-35 chr1 241793591 241793807 + 2 NA intron (NM_001367482, intron 25 of 27) intron (NM_001367482, intron 25 of 27) -54492 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 368-394 chr6 66687969 66688237 + 2 NA Intergenic MER67C|LTR|ERV1 900224 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 469-78 chr13 97789668 97789999 + 2 NA Intergenic L1MEc|LINE|L1 -163842 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 396-264 chr4 158929618 158929879 + 2 NA intron (NM_152543, intron 3 of 4) L1MB7|LINE|L1 105481 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 463-255 chr6 74745025 74745315 + 2 NA Intergenic Intergenic 383612 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 240-196 chr18 73129791 73129985 + 2 NA Intergenic L1MB5|LINE|L1 134610 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 308-117 chr12 118765017 118765190 + 2 NA Intergenic Intergenic -3424 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 550-56 chr12 44730813 44731301 + 2 NA intron (NM_006159, intron 10 of 20) L1MB1|LINE|L1 144604 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 237-232 chr3 31043490 31043692 + 2 NA Intergenic Intergenic 118196 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 506-84 chr14 54996043 54996476 + 2 NA intron (NM_007086, intron 10 of 25) Kanga2_a|DNA|TcMar-Tc2 30840 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 252-332 chr5 56130584 56130830 + 2 NA intron (NM_024669, intron 7 of 11) L1MC1|LINE|L1 102623 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 196-160 chr21 33940597 33940754 + 2 NA intron (NR_038883, intron 1 of 2) intron (NR_038883, intron 1 of 2) 9461 NR_134558 100506334 Hs.532855 NM_207472 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 311-384 chr4 85811425 85811607 + 2 NA intron (NM_001346093, intron 1 of 6) intron (NM_001346093, intron 1 of 6) -16421 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 474-140 chr2 85112102 85112465 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -21109 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 350-488 chr7 93879778 93880100 + 2 NA Intergenic L1MA9|LINE|L1 10814 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 308-516 chr8 127424189 127424461 + 2 NA intron (NR_117100, intron 4 of 5) intron (NR_117100, intron 4 of 5) 8500 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 504-50 chr12 14902082 14902446 + 2 NA Intergenic Intergenic -16410 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 347-447 chr6 160857520 160857842 + 2 NA Intergenic Intergenic -134046 NM_006724 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 300-331 chr4 90571597 90571856 + 2 NA intron (NM_207491, intron 5 of 7) L1PA17|LINE|L1 336695 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 237-259 chr4 18845247 18845459 + 2 NA Intergenic L2c|LINE|L2 -823478 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 244-292 chr5 31921672 31921847 + 2 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) 14400 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 299-232 chr2 160662050 160662207 + 2 NA Intergenic L1ME1|LINE|L1 -168321 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 260-20 chr1 118724824 118725011 + 2 NA Intergenic L1MB1|LINE|L1 263426 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 248-187 chr2 77247183 77247403 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 261328 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 417-95 chr15 91391672 91392035 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -71486 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 578-101 chr20 39522400 39522801 + 2 NA Intergenic Intergenic -297852 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 573-151 chr5 111323850 111324204 + 2 NA intron (NM_001744, intron 1 of 10) L1MEf|LINE|L1 99643 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 347-63 chr10 130311039 130311378 + 2 NA Intergenic MER68C|LTR|ERVL 174799 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 454-143 chr2 36626462 36626769 + 2 NA Intergenic LTR49-int|LTR|ERV1 -28447 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 345-476 chr6 153672753 153672936 + 2 NA Intergenic L1MEi|LINE|L1 -337652 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 343-71 chr11 21709049 21709279 + 2 NA Intergenic Intergenic -483921 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 437-210 chr5 22513200 22513551 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) -299525 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 442-117 chr19 36870378 36870716 + 2 NA intron (NM_001242476, intron 3 of 3) HAL1|LINE|L1 18896 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 402-140 chr2 39819267 39819511 + 2 NA Intergenic Intergenic -40113 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 626-145 chr8 121856987 121857555 + 2 NA Intergenic Intergenic -215831 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 325-565 chr8 142306137 142306435 + 2 NA intron (NM_001366903, intron 9 of 9) intron (NM_001366903, intron 9 of 9) 96896 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 278-452 chr9 73987572 73987749 + 2 NA Intergenic L1PA14|LINE|L1 -383871 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 213-186 chr3 162965700 162965898 + 2 NA Intergenic Intergenic 337502 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 372-249 chr2 107929158 107929457 + 2 NA Intergenic Intergenic -57217 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 209-15 chr1 167639207 167639358 + 2 NA intron (NM_001322923, intron 1 of 5) intron (NM_001322923, intron 1 of 5) 9050 NM_052862 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 392-308 chr7 52646612 52646855 + 2 NA Intergenic MER33|DNA|hAT-Charlie -388900 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 402-237 chr4 77711725 77712027 + 2 NA Intergenic LTR16E2|LTR|ERVL 107188 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 488-122 chr19 53069953 53070305 + 2 NA exon (NM_001322136, exon 5 of 5) exon (NM_001322136, exon 5 of 5) 16908 NM_001322136 90338 Hs.655967 NM_033288 ENSG00000170949 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 211-284 chr7 132700770 132700916 + 2 NA intron (NR_046323, intron 3 of 4) intron (NR_046323, intron 3 of 4) 52049 NR_046323 286023 Hs.671875 NM_173682 ENSG00000183470 FLJ40288 - uncharacterized FLJ40288 ncRNA 277-396 chr8 16318559 16318810 + 2 NA Intergenic Intergenic -125893 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 407-165 chr20 11143935 11144283 + 2 NA Intergenic Intergenic 117565 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 201-80 chr14 72488057 72488173 + 2 NA intron (NM_001370294, intron 12 of 14) LTR101_Mam|LTR|ERVL -28705 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 318-571 chr9 30875549 30875830 + 2 NA Intergenic L1MEc|LINE|L1 -467235 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 282-133 chr14 75493946 75494155 + 2 NA Intergenic MIRb|SINE|MIR -28419 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 255-109 chr14 56499397 56499550 + 2 NA Intergenic MER39|LTR|ERV1 -14858 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 360-54 chr10 106545601 106545935 + 2 NA Intergenic L1MEf|LINE|L1 405603 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 257-18 chr1 152230240 152230474 + 2 NA Intergenic MIRc|SINE|MIR -6161 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 622-104 chr5 30635465 30635919 + 2 NA Intergenic L1MB1|LINE|L1 -557994 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 207-251 chr5 155251999 155252158 + 2 NA Intergenic Intergenic 238323 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 308-136 chr14 31680264 31680502 + 2 NA intron (NR_120408, intron 6 of 9) L1ME2|LINE|L1 -34186 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 309-567 chr8 134950882 134951110 + 2 NA Intergenic Intergenic 101061 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 485-314 chr9 96767697 96768010 + 2 NA intron (NM_001314060, intron 2 of 4) L1MB7|LINE|L1 10234 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 353-448 chr6 55136938 55137220 + 2 NA intron (NM_001526, intron 1 of 7) intron (NM_001526, intron 1 of 7) 30619 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 573-40 chr11 80209170 80209585 + 2 NA Intergenic Intergenic 553426 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 340-395 chr4 37279554 37279832 + 2 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 34950 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 344-338 chr3 179027322 179027582 + 2 NA exon (NM_022470, exon 5 of 6) exon (NM_022470, exon 5 of 6) 44357 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 226-396 chrX 94248979 94249138 + 2 NA Intergenic Intergenic 574852 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 264-341 chr5 145130233 145130401 + 2 NA Intergenic Intergenic 705025 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 552-122 chr20 39575328 39575781 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -350806 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 632-24 chr13 29000488 29000833 + 2 NA intron (NM_001366651, intron 2 of 14) AluSq|SINE|Alu -23797 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 353-303 chr22 27235730 27235977 + 2 NA Intergenic Intergenic -11174 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 488-304 chrX 125818330 125818715 + 2 NA Intergenic L1PA16|LINE|L1 -291240 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 527-6 chr1 81377255 81377598 + 2 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 71031 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 345-259 chr2 78018779 78019015 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -63871 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 313-554 chr9 27105562 27105775 + 2 NA Intergenic L1MA1|LINE|L1 -3473 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 259-215 chr2 141812478 141812665 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 319130 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 271-323 chr4 115116898 115117109 + 2 NA Intergenic Intergenic -3383 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 233-122 chr16 77881333 77881557 + 2 NA intron (NM_020927, intron 6 of 8) L2b|LINE|L2 92881 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 380-211 chr20 73428 73638 + 2 NA Intergenic L1MDa|LINE|L1 -14139 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 246-200 chr2 106877701 106877866 + 2 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 8245 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 238-2 chr1 14568768 14568912 + 2 NA Intergenic Intergenic -29845 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 372-184 chr17 41927855 41928163 + 2 NA Intergenic AluJb|SINE|Alu -2608 NR_110662 83538 Hs.201134 NM_031421 ENSG00000204815 TTC25 - tetratricopeptide repeat domain 25 protein-coding 134-56 chr3 40684987 40685097 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger 160082 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 223-221 chr3 106089079 106089253 + 2 NA Intergenic Intergenic -219765 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 472-146 chr2 5457857 5458182 + 2 NA Intergenic Intergenic 233099 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 267-290 chr4 47752697 47752945 + 2 NA intron (NM_006587, intron 4 of 21) intron (NM_006587, intron 4 of 21) -78524 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 242-106 chr14 63226520 63226675 + 2 NA intron (NM_020663, intron 1 of 4) L1M7|LINE|L1 22154 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 208-211 chr5 66476277 66476474 + 2 NA Intergenic Intergenic 35229 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 223-10 chr1 81976259 81976413 + 2 NA intron (NM_001366002, intron 16 of 20) intron (NM_001366002, intron 16 of 20) 173883 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 276-483 chr9 108862810 108862995 + 2 NA exon (NM_006687, exon 1 of 1) exon (NM_006687, exon 1 of 1) 636 NM_006687 10881 Hs.123530 NM_006687 ENSG00000187003 ACTL7A - actin like 7A protein-coding 381-280 chr4 103891002 103891229 + 2 NA Intergenic Intergenic -171130 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 457-124 chr2 132373693 132374076 + 2 NA Intergenic LOR1b|LTR|ERV1 21217 NR_135203 339742 Hs.98178 NR_135203 FAM201B - family with sequence similarity 201 member B ncRNA 620-133 chr7 112044787 112045253 + 2 NA intron (NM_001363540, intron 1 of 52) L2a|LINE|L2 161379 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 239-21 chr1 245071956 245072105 + 2 NA intron (NM_032328, intron 4 of 7) L1MC1|LINE|L1 -82955 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 382-150 chr17 70722044 70722343 + 2 NA Intergenic Intergenic 479986 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 188-5 chr1 90449706 90449848 + 2 NA Intergenic Intergenic -207973 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 651-81 chr3 4616745 4617233 + 2 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 123641 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 333-506 chr6 64004925 64005125 + 2 NA intron (NM_001292009, intron 33 of 43) L1PA15|LINE|L1 198189 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 418-210 chr5 23086413 23086736 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -233230 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 160-84 chr5 8423869 8423986 + 2 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 33637 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 299-145 chr14 84813041 84813301 + 2 NA Intergenic Intergenic -458761 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 311-60 chr10 82140257 82140519 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 92532 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 353-397 chr5 4503014 4503338 + 2 NA Intergenic L1M8|LINE|L1 -270305 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 283-337 chr4 157207889 157208097 + 2 NA Intergenic Intergenic -12591 NM_001083619 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 259-199 chr2 76596759 76596989 + 2 NA Intergenic HERVL-int|LTR|ERVL -389091 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 356-265 chr2 162711227 162711440 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -57603 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 440-251 chr8 116110883 116111234 + 2 NA intron (NR_046215, intron 7 of 13) LTR1F|LTR|ERV1 214001 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 326-559 chr8 137389451 137389679 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 24023 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 323-507 chr7 89574889 89575128 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -544392 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 332-499 chr7 98328711 98329015 + 2 NA intron (NM_018842, intron 3 of 13) intron (NM_018842, intron 3 of 13) 47177 NM_015379 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 315-383 chr5 66546481 66546779 + 2 NA Intergenic L1ME1|LINE|L1 -35026 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 205-20 chr1 216315004 216315171 + 2 NA intron (NM_206933, intron 9 of 71) intron (NM_206933, intron 9 of 71) 108309 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 324-577 chrX 64713587 64713907 + 2 NA Intergenic L1MA5|LINE|L1 262703 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 177-106 chr3 153804859 153805022 + 2 NA Intergenic L2b|LINE|L2 -42414 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 317-346 chr4 48985553 48985727 + 2 NA promoter-TSS (NM_025087) promoter-TSS (NM_025087) -635 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 331-497 chr7 52942734 52942968 + 2 NA Intergenic AluSz|SINE|Alu -92782 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 332-582 chrX 39370954 39371205 + 2 NA intron (NR_110385, intron 4 of 5) intron (NR_110385, intron 4 of 5) 20695 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 321-181 chr14 76263872 76264061 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -107381 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 424-188 chr4 43437813 43438109 + 2 NA Intergenic HERV16-int|LTR|ERVL 54582 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 491-146 chr20 40661443 40661869 + 2 NA Intergenic Intergenic 27580 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 163-29 chr12 29020171 29020283 + 2 NA Intergenic Intergenic -129051 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 314-123 chr12 32998598 32998855 + 2 NA Intergenic Intergenic -101880 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 417-101 chr16 49215345 49215584 + 2 NA Intergenic MLT1-int|LTR|ERVL-MaLR 66374 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 180-181 chr9 118180987 118181153 + 2 NA Intergenic L2a|LINE|L2 476667 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 430-219 chr4 95905062 95905389 + 2 NA Intergenic Intergenic 65132 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 489-206 chr5 65962648 65963044 + 2 NA intron (NM_001253697, intron 1 of 25) intron (NM_001253697, intron 1 of 25) -17273 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 708-74 chr7 28625489 28625886 + 2 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -60446 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 336-239 chr19 27686538 27686783 + 2 NA Intergenic ALR/Alpha|Satellite|centr -106771 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 204-44 chr11 80272686 80272826 + 2 NA Intergenic L1MA9|LINE|L1 490047 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 250-89 chr12 40799127 40799373 + 2 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) -28688 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 282-223 chr2 122976544 122976792 + 2 NA Intergenic L1MC1|LINE|L1 96813 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 565-197 chr9 137997019 137997430 + 2 NA intron (NM_001243812, intron 15 of 45) intron (NM_001243812, intron 15 of 45) 47847 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 300-16 chr1 156988625 156988909 + 2 NA intron (NM_014784, intron 1 of 39) intron (NM_014784, intron 1 of 39) -52523 NR_030527 768220 NR_030527 ENSG00000211581 MIR765 MIRN765|hsa-mir-765|mir-765 microRNA 765 ncRNA 338-499 chr7 34504608 34504794 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -153517 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 362-434 chr8 68752174 68752375 + 2 NA intron (NM_001349479, intron 9 of 11) intron (NM_001349479, intron 9 of 11) 351916 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 355-235 chr2 42797656 42797873 + 2 NA Intergenic AluSz|SINE|Alu -5181 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 427-164 chr3 117385391 117385746 + 2 NA Intergenic L1MA5|LINE|L1 305357 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 482-259 chr8 4881429 4881671 + 2 NA intron (NM_033225, intron 1 of 69) (T)n|Simple_repeat|Simple_repeat 113364 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 331-335 chr22 49192687 49192871 + 2 NA Intergenic Intergenic 326009 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 311-180 chr16 62381351 62381506 + 2 NA Intergenic Intergenic -344990 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 316-604 chrX 70272513 70272689 + 2 NA intron (NM_004312, intron 5 of 16) L1ME3G|LINE|L1 4267 NM_004312 407 Hs.308 NM_004312 ENSG00000120500 ARR3 ARRX|MYP26|cArr arrestin 3 protein-coding 375-3 chr1 34376081 34376420 + 2 NA Intergenic L1ME4c|LINE|L1 199343 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 305-139 chr13 69363182 69363412 + 2 NA Intergenic Intergenic 140951 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 288-52 chr10 61147806 61148058 + 2 NA Intergenic MamRep1527|LTR|LTR 131657 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 264-411 chr8 72114628 72114836 + 2 NA Intergenic L3|LINE|CR1 -39148 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 366-77 chr11 60178397 60178671 + 2 NA intron (NM_022349, intron 3 of 5) intron (NM_022349, intron 3 of 5) 4797 NM_022349 64231 Hs.523702 NM_022349 ENSG00000110077 MS4A6A 4SPAN3|4SPAN3.2|CD20L3|CDA01|MS4A6|MST090|MSTP090 membrane spanning 4-domains A6A protein-coding 493-102 chr16 82508477 82508864 + 2 NA Intergenic Intergenic -118299 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 281-200 chr2 38615032 38615307 + 2 NA Intergenic L1ME4c|LINE|L1 -12133 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 346-517 chr9 26532717 26532946 + 2 NA Intergenic L1MA8|LINE|L1 359971 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 626-88 chr3 3402091 3402657 + 2 NA Intergenic L1M1|LINE|L1 -222657 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 408-219 chr3 174358294 174358579 + 2 NA Intergenic Intergenic -437640 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 284-119 chr14 69545496 69545709 + 2 NA Intergenic AluSx1|SINE|Alu 29269 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 380-68 chr11 77460986 77461212 + 2 NA intron (NM_001128620, intron 1 of 15) L1ME4c|LINE|L1 12964 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 154-53 chr2 234189893 234189985 + 2 NA Intergenic L1MEh|LINE|L1 139237 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 260-139 chr15 24075313 24075465 + 2 NA intron (NR_126392, intron 4 of 5) Tigger3b|DNA|TcMar-Tigger 94559 NR_152824 791115 Hs.560378 NR_026647 ENSG00000260551 PWRN2 NCRNA00199 Prader-Willi region non-protein coding RNA 2 ncRNA 467-110 chr17 71036181 71036541 + 2 NA Intergenic Intergenic 165818 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 497-113 chr2 22191489 22191828 + 2 NA Intergenic Intergenic -344821 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 227-275 chr5 18193052 18193204 + 2 NA Intergenic Intergenic 385854 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 356-118 chr12 119134135 119134377 + 2 NA intron (NM_194286, intron 8 of 12) intron (NM_194286, intron 8 of 12) 42228 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 434-256 chr7 19866916 19867256 + 2 NA Intergenic Intergenic -93469 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 497-126 chr2 68700964 68701356 + 2 NA Intergenic L1MEf|LINE|L1 -33651 NM_001166277 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 498-180 chr3 184728196 184728686 + 2 NA intron (NR_160768, intron 2 of 4) intron (NR_160768, intron 2 of 4) 16198 NR_160768 107986163 NR_160768 LOC107986163 - uncharacterized LOC107986163 ncRNA 478-261 chr7 28194069 28194539 + 2 NA intron (NR_034097, intron 2 of 3) intron (NR_034097, intron 2 of 3) -13509 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 216-38 chr10 69199062 69199265 + 2 NA exon (NM_001301683, exon 11 of 16) exon (NM_001301683, exon 11 of 16) 18929 NM_001323587 6832 Hs.106469 NM_003171 ENSG00000156502 SUPV3L1 SUV3 Suv3 like RNA helicase protein-coding 294-7 chr1 78409705 78409939 + 2 NA Intergenic L1PREC2|LINE|L1 -81152 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 272-258 chr3 20258246 20258418 + 2 NA Intergenic L1ME4b|LINE|L1 -72099 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 324-427 chr5 53403706 53403910 + 2 NA Intergenic Intergenic -76821 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 371-284 chr4 97445472 97445830 + 2 NA intron (NR_102713, intron 3 of 5) MER33|DNA|hAT-Charlie 78725 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 551-204 chr8 28237626 28237966 + 2 NA Intergenic AluSx1|SINE|Alu -79472 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 603-64 chr17 61546849 61547388 + 2 NA Intergenic L1MEi|LINE|L1 44101 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 250-128 chr14 81807023 81807174 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -63960 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 608-101 chr3 137716933 137717381 + 2 NA Intergenic AluSz|SINE|Alu -47158 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 516-35 chr11 79514012 79514379 + 2 NA Intergenic MIRb|SINE|MIR -73165 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 504-239 chr7 47104806 47105250 + 2 NA Intergenic AluJr|SINE|Alu 359775 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 292-311 chr4 41643840 41644114 + 2 NA intron (NM_001330786, intron 6 of 22) intron (NM_001330786, intron 6 of 22) 31075 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 685-40 chr19 34945477 34945982 + 2 NA TTS (NM_001099437) TTS (NM_001099437) 18500 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 176-60 chr2 112976085 112976216 + 2 NA Intergenic Intergenic -1856 NM_001278568 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 325-18 chr1 104909060 104909364 + 2 NA Intergenic Intergenic 709723 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 479-150 chr3 194909919 194910271 + 2 NA Intergenic FRAM|SINE|Alu -141386 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 419-304 chr8 133678124 133678423 + 2 NA intron (NR_134462, intron 1 of 2) intron (NR_134462, intron 1 of 2) 5793 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 211-254 chr6 4308401 4308597 + 2 NA Intergenic MER97c|DNA|hAT-Tip100 -118470 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 176-162 chrX 98777909 98778031 + 2 NA Intergenic Intergenic -1213435 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 291-462 chr8 104072352 104072573 + 2 NA intron (NR_145711, intron 17 of 21) MIRb|SINE|MIR -150873 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 231-106 chr15 27068760 27068921 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 92479 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 377-309 chr5 14413190 14413397 + 2 NA intron (NM_007118, intron 33 of 56) intron (NM_007118, intron 33 of 56) -50690 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 194-142 chr4 41761196 41761342 + 2 NA Intergenic L1MC5a|LINE|L1 -12299 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 471-61 chr12 23167314 23167714 + 2 NA Intergenic MIRb|SINE|MIR -8122 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 251-35 chr10 66134091 66134305 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 562773 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 146-5 chr1 163445964 163446072 + 2 NA Intergenic L3|LINE|CR1 -22827 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 458-281 chrX 98724544 98724863 + 2 NA Intergenic L1M1|LINE|L1 -1160168 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 407-70 chr12 113857094 113857366 + 2 NA intron (NM_001146698, intron 22 of 24) intron (NM_001146698, intron 22 of 24) -83547 NR_110025 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 212-118 chr16 79750015 79750173 + 2 NA intron (NR_104663, intron 4 of 5) intron (NR_104663, intron 4 of 5) -20377 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 249-266 chr3 85044662 85044826 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 17520 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 411-37 chr10 84652090 84652412 + 2 NA Intergenic L1P2|LINE|L1 227082 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 496-107 chr16 63745978 63746378 + 2 NA Intergenic L1PA13|LINE|L1 1375885 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 642-22 chr11 128065734 128066080 + 2 NA Intergenic L1PREC2|LINE|L1 -142859 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 222-156 chr19 27610329 27610517 + 2 NA Intergenic ALR/Alpha|Satellite|centr -183008 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 237-146 chr18 6330146 6330368 + 2 NA intron (NM_001365765, intron 1 of 18) MLT1D|LTR|ERVL-MaLR 28773 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 217-269 chr4 97327890 97328056 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -38953 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 279-448 chrX 85474807 85475064 + 2 NA Intergenic L2c|LINE|L2 -95270 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 533-33 chr12 10294677 10295019 + 2 NA intron (NM_001351060, intron 2 of 8) L1ME3A|LINE|L1 -9598 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 226-344 chr8 85601516 85601673 + 2 NA Intergenic Intergenic 54082 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 257-116 chr14 72761487 72761655 + 2 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 131078 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 314-78 chr10 106686429 106686694 + 2 NA intron (NM_001206569, intron 10 of 25) intron (NM_001206569, intron 10 of 25) 478145 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 462-63 chr12 85456078 85456383 + 2 NA Intergenic Intergenic 176010 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 831-3 chr10 61419712 61420490 + 2 NA intron (NR_134508, intron 4 of 6) Tigger2|DNA|TcMar-Tigger -32538 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 260-340 chr5 26443910 26444068 + 2 NA Intergenic Intergenic 594597 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 289-47 chr10 15475274 15475525 + 2 NA Intergenic MIRb|SINE|MIR -104110 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 268-184 chr2 23090653 23090868 + 2 NA Intergenic Intergenic -294419 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 211-21 chr1 235709062 235709226 + 2 NA exon (NM_001301365, exon 44 of 53) exon (NM_001301365, exon 44 of 53) -58390 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 189-158 chr5 37520128 37520229 + 2 NA intron (NM_001345998, intron 9 of 17) intron (NM_001345998, intron 9 of 17) 140860 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 224-103 chr15 90314379 90314585 + 2 NA Intergenic Intergenic 34965 NR_028287 23766 Hs.592014 NR_028287 GABARAPL3 ATG8D GABA type A receptor associated protein like 3 pseudogene pseudo 236-92 chr12 83869491 83869661 + 2 NA Intergenic Intergenic 1043223 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 387-64 chr11 81700278 81700569 + 2 NA Intergenic Intergenic 190413 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 251-305 chr5 72439674 72439866 + 2 NA TTS (NM_152625) TTS (NM_152625) 67640 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 447-231 chr6 79065968 79066344 + 2 NA intron (NM_017934, intron 4 of 39) intron (NM_017934, intron 4 of 39) 12098 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 291-58 chr10 85165804 85165949 + 2 NA Intergenic Intergenic 33029 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 824-44 chr7 52670673 52671261 + 2 NA Intergenic Intergenic -364666 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 155-79 chr5 79927476 79927563 + 2 NA Intergenic Intergenic -9060 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 291-422 chr7 97438657 97438872 + 2 NA Intergenic Intergenic -293322 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 340-445 chr5 56732071 56732298 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 40687 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 511-250 chr7 91572607 91572953 + 2 NA Intergenic Intergenic 307922 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 424-268 chr7 97425524 97425854 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -306397 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 379-250 chr4 131458714 131459008 + 2 NA Intergenic Intergenic -305977 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 306-368 chr4 146235059 146235329 + 2 NA Intergenic L2a|LINE|L2 20656 NM_001371071 297-281 chr22 46850756 46850979 + 2 NA intron (NM_001284305, intron 4 of 12) L1MB7|LINE|L1 65175 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 356-278 chr2 225889726 225890023 + 2 NA Intergenic Intergenic -252920 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 495-104 chr2 33766837 33767220 + 2 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -38811 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 155-10 chr1 106030247 106030358 + 2 NA Intergenic Intergenic -2049 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 249-56 chr10 69615231 69615458 + 2 NA Intergenic L1MC5a|LINE|L1 -14903 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 286-58 chr10 129484775 129484957 + 2 NA intron (NM_002412, intron 1 of 4) L1MEc|LINE|L1 17625 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 288-317 chr5 19288907 19289114 + 2 NA Intergenic Intergenic 597262 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 200-88 chr15 94367274 94367464 + 2 NA intron (NM_018349, intron 9 of 21) intron (NM_018349, intron 9 of 21) 11439 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 186-178 chr9 105940303 105940482 + 2 NA Intergenic Intergenic 245851 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 266-450 chr9 90261293 90261532 + 2 NA Intergenic Intergenic 172077 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 233-191 chr2 171254395 171254602 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -23205 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 368-119 chr12 119079808 119080117 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 96522 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 348-123 chr13 89209783 89210015 + 2 NA Intergenic Intergenic -25392 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 309-24 chr1 198336970 198337232 + 2 NA Intergenic Intergenic 180103 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 263-189 chr2 28720302 28720510 + 2 NA intron (NR_145832, intron 1 of 1) intron (NR_145832, intron 1 of 1) 15799 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 348-450 chr6 54135745 54136016 + 2 NA intron (NM_138569, intron 3 of 12) intron (NM_138569, intron 3 of 12) 24437 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 277-341 chr6 5753998 5754268 + 2 NA intron (NM_006567, intron 6 of 6) MIRb|SINE|MIR -58861 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 214-263 chr5 82331988 82332176 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 52620 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 279-132 chr17 5719385 5719538 + 2 NA Intergenic Intergenic -52773 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 375-176 chr18 7513463 7513822 + 2 NA Intergenic L2a|LINE|L2 -52636 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 589-89 chr3 87617809 87618218 + 2 NA Intergenic Intergenic -174693 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 281-261 chr20 52433702 52433955 + 2 NA Intergenic MER124|DNA?|DNA? -187010 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 268-406 chr8 103582108 103582291 + 2 NA intron (NM_001348497, intron 1 of 22) L1MA1|LINE|L1 -80289 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 256-464 chrX 96774869 96775081 + 2 NA intron (NM_007309, intron 4 of 26) intron (NM_007309, intron 4 of 26) 90133 NM_006729 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 690-37 chr14 53743605 53744213 + 2 NA Intergenic Intergenic 204575 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 530-95 chr17 10536426 10536881 + 2 NA intron (NM_001100112, intron 16 of 39) intron (NM_001100112, intron 16 of 39) 12970 NM_001100112 4620 Hs.667534 NM_017534 ENSG00000125414 MYH2 IBM3|MYH2A|MYHSA2|MYHas8|MYPOP|MyHC-2A|MyHC-IIa myosin heavy chain 2 protein-coding 138-5 chr1 116090944 116091069 + 2 NA Intergenic L1PB3|LINE|L1 -20749 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 294-463 chr8 62420758 62420981 + 2 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 172015 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 356-250 chr2 81117683 81118019 + 2 NA Intergenic L3|LINE|CR1 349095 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 270-198 chr2 199399929 199400122 + 2 NA intron (NR_134967, intron 3 of 4) MIRb|SINE|MIR 57914 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 193-39 chr11 80524023 80524177 + 2 NA Intergenic Intergenic 238703 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 235-232 chr3 81418566 81418790 + 2 NA Intergenic Intergenic 342967 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 359-290 chr20 49576566 49576830 + 2 NA Intergenic L1M7|LINE|L1 -8561 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 461-204 chr5 3336096 3336428 + 2 NA Intergenic MIRc|SINE|MIR -116554 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 1239-6 chr8 138895171 138896124 + 2 NA intron (NM_152888, intron 1 of 64) L1MDa|LINE|L1 18394 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 371-64 chr11 25819697 25819944 + 2 NA Intergenic L2c|LINE|L2 -369303 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 406-242 chr5 141115291 141115646 + 2 NA Intergenic L1M4|LINE|L1 -6350 NM_018938 56131 Hs.591250 NM_018938 ENSG00000081818 PCDHB4 PCDH-BETA4 protocadherin beta 4 protein-coding 278-177 chr18 29046913 29047144 + 2 NA Intergenic L1PA11|LINE|L1 -869898 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 282-487 chr9 78585191 78585430 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 288185 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 354-155 chr15 71229907 71230157 + 2 NA intron (NM_024817, intron 3 of 16) intron (NM_024817, intron 3 of 16) -40973 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 251-104 chr14 95889242 95889433 + 2 NA intron (NR_038861, intron 1 of 1) ORSL|DNA|hAT-Tip100 12565 NR_132398 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 376-103 chr14 48776564 48776813 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 809692 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 260-398 chr7 12896382 12896625 + 2 NA Intergenic Intergenic 208870 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 574-92 chr20 4551251 4551748 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -134957 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 293-479 chr9 107871901 107872161 + 2 NA Intergenic Intergenic -382262 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 344-27 chr1 178550071 178550346 + 2 NA Intergenic Intergenic 7412 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 528-150 chr21 17119648 17120088 + 2 NA Intergenic L2a|LINE|L2 -319022 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 247-181 chr19 57589258 57589429 + 2 NA intron (NM_001321145, intron 2 of 2) intron (NM_001321145, intron 2 of 2) 5198 NM_001321145 284307 Hs.454830 NM_001010879 ENSG00000171649 ZIK1 ZNF762 zinc finger protein interacting with K protein 1 protein-coding 326-337 chr3 77505076 77505334 + 2 NA intron (NM_001290039, intron 5 of 26) intron (NM_001290039, intron 5 of 26) 407193 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 650-22 chr12 91114242 91114636 + 2 NA Intergenic Intergenic -2945 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 382-64 chr11 87031287 87031603 + 2 NA Intergenic Intergenic -6489 NR_033149 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 338-552 chr8 110619145 110619466 + 2 NA Intergenic L1MC3|LINE|L1 408128 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 421-319 chr9 79681161 79681467 + 2 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) 108137 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 347-389 chr5 40792987 40793287 + 2 NA intron (NM_001355028, intron 1 of 9) intron (NM_001355028, intron 1 of 9) 5040 NM_001355029 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 332-157 chr14 88221732 88221955 + 2 NA intron (NM_138317, intron 4 of 6) L1MC1|LINE|L1 49068 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 433-166 chr22 48915076 48915436 + 2 NA Intergenic L1ME1|LINE|L1 48486 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 324-149 chr13 104930261 104930552 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -535461 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 376-376 chr7 63978259 63978496 + 2 NA Intergenic L1MA9|LINE|L1 -20429 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 465-256 chr6 107988120 107988412 + 2 NA Intergenic Intergenic -30058 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 309-181 chr15 91712093 91712360 + 2 NA Intergenic MIR|SINE|MIR -141482 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 115-41 chr6 22199734 22199811 + 2 NA Intergenic MER39|LTR|ERV1 -52579 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 352-277 chr20 9633397 9633620 + 2 NA intron (NM_020341, intron 4 of 10) intron (NM_020341, intron 4 of 10) -118510 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 550-216 chr7 54187881 54188378 + 2 NA Intergenic Intergenic -142568 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 171-40 chr16 55123125 55123251 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 191989 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 268-90 chr12 52281950 52282169 + 2 NA intron (NM_001320198, intron 2 of 10) intron (NM_001320198, intron 2 of 10) 7414 NM_001320198 3892 Hs.278658 NM_002284 ENSG00000170442 KRT86 HB6|Hb1|K86|KRTHB1|KRTHB6|MNX keratin 86 protein-coding 274-47 chr10 66465133 66465403 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -460768 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 143-89 chr8 140334212 140334305 + 2 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 123486 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 227-393 chr9 38136165 38136307 + 2 NA Intergenic Intergenic -67009 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 343-514 chr7 89199958 89200219 + 2 NA intron (NM_181646, intron 1 of 3) MIRb|SINE|MIR -404351 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 584-181 chr9 112996270 112996627 + 2 NA TTS (NM_001101338) TTS (NM_001101338) 15744 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 308-288 chr3 34347419 34347647 + 2 NA Intergenic Intergenic 548903 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 313-74 chr11 20724756 20725046 + 2 NA intron (NM_201551, intron 2 of 18) THE1D|LTR|ERVL-MaLR 55315 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 240-188 chr18 13988676 13988912 + 2 NA Intergenic Intergenic -73087 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 642-113 chr9 25449562 25450188 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 228983 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 576-67 chr17 70128225 70128672 + 2 NA intron (NM_001291622, intron 4 of 5) intron (NM_001291622, intron 4 of 5) 23603 NM_001291625 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 449-147 chr21 16291903 16292259 + 2 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -7313 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 248-167 chr2 4451860 4452094 + 2 NA Intergenic Intergenic 204245 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 628-33 chr12 23153923 23154361 + 2 NA Intergenic L1MB3|LINE|L1 -21494 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 411-265 chr6 150361320 150361637 + 2 NA Intergenic Intergenic -7534 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 264-438 chr9 30447305 30447469 + 2 NA Intergenic Intergenic -38933 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 410-139 chr2 77962699 77962958 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -7802 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 336-160 chr14 45738318 45738516 + 2 NA Intergenic L1MA5A|LINE|L1 -22815 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 672-60 chr2 138293979 138294480 + 2 NA Intergenic MER91C|DNA|hAT-Tip100 192345 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 328-600 chr9 26497270 26497454 + 2 NA Intergenic L1MA4|LINE|L1 395440 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 126-39 chr3 43634804 43634920 + 2 NA intron (NM_001346469, intron 1 of 11) L2b|LINE|L2 -12785 NM_001204831 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 354-439 chr7 91469714 91470062 + 2 NA Intergenic Intergenic 205455 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 431-243 chr6 51505375 51505611 + 2 NA Intergenic MIR3|SINE|MIR -116377 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 214-131 chr17 61838631 61838835 + 2 NA intron (NM_032043, intron 6 of 19) intron (NM_032043, intron 6 of 19) 24826 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 288-160 chr18 61483757 61484021 + 2 NA intron (NM_031891, intron 1 of 11) MIR|SINE|MIR 150459 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 264-215 chr2 141953725 141953911 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 177883 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 310-218 chr2 5880842 5881090 + 2 NA Intergenic Intergenic -51721 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 330-93 chr11 60315492 60315733 + 2 NA Intergenic Intergenic -19270 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 184-21 chr10 24265664 24265818 + 2 NA intron (NM_019590, intron 2 of 20) L2a|LINE|L2 -9944 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 337-105 chr12 7280929 7281240 + 2 NA Intergenic MER4-int|LTR|ERV1 -23248 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 316-549 chr8 83235044 83235326 + 2 NA Intergenic L1M2|LINE|L1 -168573 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 389-219 chr22 46781518 46781751 + 2 NA intron (NM_001284305, intron 1 of 12) intron (NM_001284305, intron 1 of 12) 7707 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 352-17 chr1 89162347 89162571 + 2 NA intron (NM_207398, intron 3 of 10) L1PA13|LINE|L1 13544 NM_207398 388646 Hs.591450 NM_207398 ENSG00000213512 GBP7 GBP4L guanylate binding protein 7 protein-coding 322-183 chr16 17425816 17426076 + 2 NA intron (NM_022166, intron 1 of 11) L2c|LINE|L2 45014 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 353-315 chr3 23572922 23573102 + 2 NA intron (NM_001370225, intron 5 of 5) intron (NM_001370225, intron 5 of 5) -232943 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 297-341 chr4 98951778 98952041 + 2 NA Intergenic MER65A|LTR|ERV1 -21272 NM_001968 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 466-85 chr15 60983764 60984195 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 245323 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 568-26 chr11 45780378 45780742 + 2 NA Intergenic L1MC|LINE|L1 9128 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 LINC02716 DKFZp779M0652 long intergenic non-protein coding RNA 2716 ncRNA 259-412 chr8 122900907 122901102 + 2 NA intron (NM_001362797, intron 3 of 4) MER113B|DNA|hAT-Charlie 119349 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 148-74 chr5 150843921 150844030 + 2 NA Intergenic Intergenic -2546 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 346-405 chr5 141248677 141248993 + 2 NA 3' UTR (NM_018935, exon 1 of 1) 3' UTR (NM_018935, exon 1 of 1) 3440 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 176-12 chr10 72432296 72432430 + 2 NA intron (NM_001195519, intron 3 of 6) AluJr|SINE|Alu -77444 NM_001365080 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 714-22 chr14 72089494 72090007 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 156223 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 271-143 chr14 86150095 86150337 + 2 NA Intergenic L2a|LINE|L2 215538 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 383-34 chr10 64247023 64247323 + 2 NA Intergenic L1MA7|LINE|L1 -578355 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 443-133 chr18 60938633 60939009 + 2 NA Intergenic Intergenic -394609 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 521-156 chr3 14023306 14023706 + 2 NA intron (NR_002223, intron 1 of 2) L1PREC2|LINE|L1 86199 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 903-28 chr4 108776707 108777378 + 2 NA Intergenic AluSz|SINE|Alu -13989 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 362-151 chr14 66119710 66119899 + 2 NA Intergenic Intergenic -366567 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 562-61 chr14 100863218 100863656 + 2 NA Intergenic Intergenic -5623 NR_030172 574450 NR_030172 ENSG00000207989 MIR493 MIRN493|hsa-mir-493|mir-493 microRNA 493 ncRNA 240-84 chr11 82543289 82543468 + 2 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -139465 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 281-347 chr5 12621708 12621951 + 2 NA intron (NR_033383, intron 2 of 3) L1PB3|LINE|L1 -46030 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 161-134 chr8 137792796 137792895 + 2 NA Intergenic Intergenic 290700 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 375-335 chr5 125596248 125596453 + 2 NA intron (NR_109887, intron 3 of 3) MER4B|LTR|ERV1 103089 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 185-77 chr17 69624712 69624851 + 2 NA intron (NR_109972, intron 3 of 4) L2c|LINE|L2 30794 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 443-168 chr2 225912586 225912963 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -230020 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 519-180 chr5 92511896 92512302 + 2 NA Intergenic L1MB8|LINE|L1 1059244 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 195-150 chr3 90238054 90238230 + 2 NA Intergenic L1MEf|LINE|L1 1130521 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 364-169 chr17 54980458 54980753 + 2 NA intron (NM_178509, intron 1 of 17) MER51A|LTR|ERV1 -11820 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 286-11 chr1 64229111 64229391 + 2 NA intron (NR_158769, intron 6 of 8) intron (NR_158769, intron 6 of 8) 25628 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 376-377 chr7 64751554 64751895 + 2 NA Intergenic PABL_A-int|LTR|ERV1 -42704 NM_001271638 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 310-352 chr3 177806331 177806594 + 2 NA Intergenic L1ME2z|LINE|L1 -10403 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 342-103 chr12 14327752 14327932 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -37790 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 200-77 chr14 60892046 60892150 + 2 NA intron (NM_001177963, intron 6 of 6) L1M4c|LINE|L1 88981 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 242-16 chr1 150829440 150829595 + 2 NA intron (NM_001286036, intron 11 of 21) intron (NM_001286036, intron 11 of 21) -21257 NM_000396 1513 Hs.632466 NM_000396 ENSG00000143387 CTSK CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD cathepsin K protein-coding 549-132 chr21 28821097 28821522 + 2 NA Intergenic MIRb|SINE|MIR 64058 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 249-441 chr8 142339466 142339617 + 2 NA intron (NM_001291931, intron 2 of 10) intron (NM_001291931, intron 2 of 10) 63641 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 215-173 chr20 52453757 52453917 + 2 NA Intergenic Intergenic -167001 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 355-479 chr7 110112178 110112418 + 2 NA Intergenic L1MB7|LINE|L1 -152085 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 317-429 chr6 140215698 140215981 + 2 NA Intergenic L1PB4|LINE|L1 10587 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 323-385 chr4 175807080 175807279 + 2 NA intron (NR_125901, intron 6 of 7) intron (NR_125901, intron 6 of 7) 5935 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 340-196 chr16 76454779 76455048 + 2 NA intron (NM_001322178, intron 8 of 22) intron (NM_001322178, intron 8 of 22) 145061 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 299-89 chr11 112813211 112813392 + 2 NA Intergenic Intergenic -148119 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 403-331 chrX 13932907 13933289 + 2 NA intron (NM_001318729, intron 1 of 6) intron (NM_001318729, intron 1 of 6) 5540 NM_001001994 2824 Hs.495710 NM_005278 ENSG00000046653 GPM6B M6B glycoprotein M6B protein-coding 206-115 chr2 60960688 60960832 + 2 NA intron (NM_144709, intron 10 of 17) intron (NM_144709, intron 10 of 17) 56452 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 233-141 chr18 62811587 62811772 + 2 NA intron (NM_194449, intron 1 of 16) intron (NM_194449, intron 1 of 16) 96138 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 166-125 chr9 132535733 132535843 + 2 NA intron (NM_207417, intron 4 of 6) L1MC5a|LINE|L1 -46818 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 223-203 chr3 26142553 26142718 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -268940 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 292-242 chr2 195254676 195254906 + 2 NA Intergenic Intergenic -402167 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 342-153 chr14 95785629 95785852 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 70257 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 131-10 chr10 65875118 65875183 + 2 NA Intergenic Intergenic 303725 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 293-94 chr12 115120924 115121144 + 2 NA Intergenic Intergenic -436859 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 137-63 chr3 110933665 110933740 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 136257 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 237-73 chr12 40041257 40041445 + 2 NA intron (NM_052885, intron 2 of 9) L2b|LINE|L2 64730 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 213-216 chr4 109912231 109912381 + 2 NA promoter-TSS (NM_001178130) promoter-TSS (NM_001178130) -577 NM_001357021 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 230-199 chr2 233944384 233944536 + 2 NA intron (NM_024080, intron 6 of 25) intron (NM_024080, intron 6 of 25) 27087 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 216-30 chr10 4861682 4861893 + 2 NA Intergenic L1P1|LINE|L1 35580 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 344-308 chr3 36855610 36855855 + 2 NA exon (NM_014831, exon 12 of 23) exon (NM_014831, exon 12 of 23) -33232 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 252-179 chr2 26682108 26682331 + 2 NA Intergenic Intergenic -10503 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 335-543 chr8 117507928 117508125 + 2 NA Intergenic Intergenic -12687 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 370-196 chr18 71979619 71979863 + 2 NA Intergenic MER57E1|LTR|ERV1 -197515 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 397-194 chr21 40289717 40290030 + 2 NA intron (NR_073202, intron 10 of 32) intron (NR_073202, intron 10 of 32) -77442 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 266-428 chr8 109280633 109280883 + 2 NA intron (NM_032869, intron 6 of 9) intron (NM_032869, intron 6 of 9) 49175 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 267-148 chr17 66515882 66516052 + 2 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -99113 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 251-142 chr18 64569684 64569839 + 2 NA Intergenic L1ME3A|LINE|L1 -309706 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 389-323 chr6 113139781 113140110 + 2 NA Intergenic L1M5|LINE|L1 293502 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 318-502 chr7 34536726 34536908 + 2 NA intron (NR_033665, intron 2 of 3) MIRb|SINE|MIR -121401 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 360-505 chrX 101181344 101181538 + 2 NA Intergenic L1MB5|LINE|L1 -38503 NM_001939 1821 Hs.159291 NM_001939 ENSG00000102385 DRP2 DRP-2 dystrophin related protein 2 protein-coding 334-165 chr14 96623799 96624123 + 2 NA Intergenic Intergenic -117230 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 150-7 chr1 181630181 181630270 + 2 NA intron (NM_001205293, intron 6 of 47) intron (NM_001205293, intron 6 of 47) 146708 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 518-203 chr4 64487608 64487944 + 2 NA Intergenic Intergenic -78316 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 262-361 chr6 38842202 38842350 + 2 NA intron (NM_001371, intron 32 of 91) intron (NM_001371, intron 32 of 91) 110831 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 312-90 chr11 115025804 115025970 + 2 NA Intergenic L1MB3|LINE|L1 -307690 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 291-463 chr8 108632288 108632512 + 2 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 155194 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 612-84 chr22 35071840 35072401 + 2 NA intron (NM_001303508, intron 2 of 4) intron (NM_001303508, intron 2 of 4) 5962 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 218-18 chr1 213779945 213780137 + 2 NA Intergenic Intergenic -144708 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 154-31 chr14 52588456 52588562 + 2 NA intron (NM_001353361, intron 1 of 7) L1MC4|LINE|L1 35673 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 269-348 chr6 72266956 72267188 + 2 NA intron (NM_001350414, intron 15 of 24) intron (NM_001350414, intron 15 of 24) 50131 NM_001350471 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 151-22 chr14 39735944 39736038 + 2 NA Intergenic MER67D|LTR|ERV1 -303491 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 295-380 chr5 86010066 86010251 + 2 NA Intergenic L1PA11|LINE|L1 -272286 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 386-333 chr7 110957108 110957318 + 2 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -133793 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 473-133 chr2 53304978 53305313 + 2 NA Intergenic L1PA16|LINE|L1 -462638 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 343-426 chr5 63487040 63487375 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 475085 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 390-50 chr10 127817769 127818009 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 75052 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 298-140 chr15 54335483 54335709 + 2 NA intron (NM_001329919, intron 15 of 31) L1ME1|LINE|L1 322948 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 312-517 chr8 88627338 88627520 + 2 NA Intergenic L1MA4A|LINE|L1 -299946 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 293-15 chr1 158411370 158411572 + 2 NA Intergenic Intergenic 9395 NM_001004476 391107 Hs.626815 NM_001004476 ENSG00000180708 OR10K2 OR1-4 olfactory receptor family 10 subfamily K member 2 protein-coding 328-427 chr4 187755469 187755681 + 2 NA Intergenic L1PA16|LINE|L1 -82934 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 433-14 chr1 215879535 215879927 + 2 NA intron (NM_206933, intron 41 of 71) intron (NM_206933, intron 41 of 71) -192734 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 335-459 chr6 45845841 45846085 + 2 NA Intergenic Intergenic 91634 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 625-33 chr16 8010048 8010508 + 2 NA Intergenic Intergenic 579560 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 216-317 chr6 162894501 162894672 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 159575 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 339-281 chr2 153173952 153174249 + 2 NA Intergenic MLT1-int|LTR|ERVL-MaLR 304662 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 501-212 chr5 97903276 97903645 + 2 NA intron (NR_146299, intron 2 of 2) L1MCb|LINE|L1 62702 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 313-212 chr18 6667787 6668059 + 2 NA Intergenic FLAM_A|SINE|Alu -61793 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 416-43 chr10 64325252 64325566 + 2 NA Intergenic LTR68|LTR|ERV1 -500119 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 171-52 chr2 57689972 57690101 + 2 NA Intergenic L1PA17|LINE|L1 -217615 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 338-500 chr7 40858493 40858702 + 2 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 121342 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 416-249 chr4 65301743 65302031 + 2 NA Intergenic LTR16E1|LTR|ERVL -297387 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 195-255 chr9 74449077 74449235 + 2 NA Intergenic Intergenic -48179 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 710-54 chr21 29531997 29532476 + 2 NA Intergenic Intergenic 36189 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 276-208 chr19 27879387 27879582 + 2 NA intron (NR_146734, intron 1 of 7) HUERS-P3-int|LTR|ERV1 -85544 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 420-278 chr8 13840656 13841007 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 211141 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 226-312 chr6 147629300 147629462 + 2 NA Intergenic L3|LINE|CR1 120691 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 397-354 chr9 30105535 30105855 + 2 NA Intergenic Intergenic 302759 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 271-199 chr2 67207233 67207403 + 2 NA intron (NR_038844, intron 1 of 7) intron (NR_038844, intron 1 of 7) -6090 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 264-314 chr5 24889459 24889655 + 2 NA Intergenic L1PA16|LINE|L1 -48974 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 260-215 chr2 116350590 116350736 + 2 NA Intergenic Intergenic 1006848 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 264-370 chr6 134337178 134337370 + 2 NA Intergenic MLT2B4|LTR|ERVL -19216 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 240-217 chr2 80830841 80831023 + 2 NA Intergenic L1MEd|LINE|L1 517553 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 381-397 chr8 137749880 137750143 + 2 NA Intergenic Intergenic 333534 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 329-404 chr4 41517899 41518218 + 2 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -20099 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 247-39 chr10 52455764 52455932 + 2 NA promoter-TSS (NR_120642) promoter-TSS (NR_120642) -576 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 148-53 chr3 36067713 36067844 + 2 NA Intergenic Intergenic -312709 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 144-22 chr13 63171141 63171238 + 2 NA Intergenic Intergenic 156905 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 229-88 chr12 25057763 25057932 + 2 NA intron (NM_001204126, intron 1 of 19) L1ME2|LINE|L1 5141 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 288-323 chr5 30935052 30935246 + 2 NA Intergenic Intergenic -258537 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 263-283 chr4 45630961 45631126 + 2 NA Intergenic L1MA3|LINE|L1 493011 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 512-160 chr3 27296819 27297189 + 2 NA intron (NM_152534, intron 15 of 38) intron (NM_152534, intron 15 of 38) 72379 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 348-521 chr8 79241404 79241627 + 2 NA Intergenic LTR81A|LTR|Gypsy -90673 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 342-54 chr10 17539169 17539364 + 2 NA Intergenic L1MB7|LINE|L1 78108 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 546-256 chr9 85668298 85668832 + 2 NA intron (NM_015239, intron 8 of 25) L1MC5a|LINE|L1 73464 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 369-261 chr3 33754919 33755227 + 2 NA Intergenic L1ME1|LINE|L1 -36819 NM_001365627 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 314-559 chr8 54201990 54202224 + 2 NA Intergenic L1MA4|LINE|L1 66866 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 489-8 chr1 99627285 99627738 + 2 NA intron (NR_031666, intron 1 of 4) L2a|LINE|L2 -18602 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 556-226 chr8 109186944 109187312 + 2 NA Intergenic Intergenic 100500 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 431-64 chr12 32750650 32750903 + 2 NA exon (NM_001040436, exon 3 of 5) exon (NM_001040436, exon 3 of 5) 5121 NM_001040436 51067 Hs.505231 NM_015936 ENSG00000139131 YARS2 CGI-04|MLASA2|MT-TYRRS|TYRRS tyrosyl-tRNA synthetase 2 protein-coding 235-24 chr1 210592012 210592222 + 2 NA intron (NM_001122834, intron 10 of 11) L1MA3|LINE|L1 262751 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 355-356 chr4 35667243 35667537 + 2 NA Intergenic Intergenic 576549 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 220-282 chr5 36093032 36093228 + 2 NA Intergenic Intergenic -26248 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 699-85 chr5 102554794 102555182 + 2 NA Intergenic Intergenic -26380 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 268-412 chr8 120740540 120740742 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -20612 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 357-155 chr17 61540988 61541324 + 2 NA Intergenic L1PA16|LINE|L1 50063 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 232-279 chr4 135087173 135087321 + 2 NA Intergenic L1MC5a|LINE|L1 36312 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 272-209 chr2 120151979 120152200 + 2 NA intron (NM_001330310, intron 20 of 24) L1MB7|LINE|L1 71311 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 268-166 chr18 67368291 67368454 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -148174 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 350-40 chr10 35674708 35675023 + 2 NA Intergenic L1MCa|LINE|L1 -33431 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 338-184 chr15 79653712 79654005 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 221342 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 362-300 chr4 43164646 43164964 + 2 NA Intergenic MIR|SINE|MIR 271539 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 166-110 chr7 32145788 32145903 + 2 NA intron (NM_001322059, intron 3 of 17) MIRc|SINE|MIR -74409 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 294-442 chr7 93141265 93141414 + 2 NA intron (NM_001303500, intron 3 of 3) L2a|LINE|L2 7046 NM_001303498 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 222-172 chr2 53050285 53050492 + 2 NA Intergenic L1MC3|LINE|L1 -347773 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 312-68 chr10 129676600 129676774 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 166687 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 348-48 chr10 38810547 38810847 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 114101 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 342-484 chr7 46007352 46007595 + 2 NA Intergenic Intergenic -86201 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 303-496 chr9 91631260 91631450 + 2 NA Intergenic Intergenic -4896 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 182-30 chr11 94408422 94408581 + 2 NA Intergenic L1PB1|LINE|L1 -7082 NM_001330345 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 503-10 chr1 77064084 77064554 + 2 NA 3' UTR (NM_001320273, exon 4 of 4) 3' UTR (NM_001320273, exon 4 of 4) 4176 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 325-99 chr11 36029601 36029794 + 2 NA intron (NM_001304264, intron 1 of 5) Tigger12A|DNA|TcMar-Tigger 19599 NR_039769 100616311 NR_039769 ENSG00000263389 MIR3973 - microRNA 3973 ncRNA 313-187 chr16 72209432 72209635 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -37083 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 444-46 chr12 15082674 15083022 + 2 NA Intergenic Intergenic -69075 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 381-57 chr10 83218695 83219059 + 2 NA Intergenic Intergenic 458212 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 232-310 chr5 97594834 97594988 + 2 NA intron (NR_105028, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 90215 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 516-115 chr2 18294710 18295068 + 2 NA Intergenic (ATAATAT)n|Simple_repeat|Simple_repeat 265764 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 375-112 chr13 68661917 68662232 + 2 NA Intergenic Intergenic 223251 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 225-31 chr10 32175549 32175712 + 2 NA Intergenic L1MB5|LINE|L1 -119205 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 642-114 chr9 70231211 70231550 + 2 NA intron (NR_039990, intron 2 of 3) L1MEd|LINE|L1 27494 NR_039990 100507299 Hs.556816 NR_039990 SMC5-AS1 MAMDC2-AS2 SMC5 antisense RNA 1 (head to head) ncRNA 441-113 chr2 5970528 5970891 + 2 NA non-coding (NR_026832, exon 2 of 2) non-coding (NR_026832, exon 2 of 2) -3953 NR_106980 102465693 NR_106980 ENSG00000276733 MIR7158 hsa-mir-7158 microRNA 7158 ncRNA 165-129 chr8 65768813 65768950 + 2 NA intron (NM_001242318, intron 3 of 12) intron (NM_001242318, intron 3 of 12) 20176 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 199-226 chr7 83072739 83072907 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 90061 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 318-284 chr2 123593429 123593721 + 2 NA Intergenic Intergenic 431599 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 309-324 chr22 19564550 19564794 + 2 NA Intergenic L1ME1|LINE|L1 2167 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 353-171 chr16 10612583 10612804 + 2 NA Intergenic Intergenic -32095 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 344-441 chr6 151128479 151128758 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 25943 NR_162145 113219461 NR_162145 MIR12131 - microRNA 12131 ncRNA 220-44 chr10 43733934 43734065 + 2 NA Intergenic L1M4|LINE|L1 44826 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 206-189 chr4 147358766 147358954 + 2 NA Intergenic SVA_D|Retroposon|SVA -14143 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 119-11 chr10 116407845 116407946 + 2 NA Intergenic L1ME2|LINE|L1 -19952 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 352-234 chr2 57508139 57508364 + 2 NA Intergenic Intergenic -399400 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 212-191 chr21 18577493 18577655 + 2 NA intron (NR_109925, intron 3 of 3) intron (NR_109925, intron 3 of 3) 108590 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 709-4 chr1 247406659 247407191 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -9231 NM_001127461 114548 Hs.159483 NM_004895 ENSG00000162711 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1 NLR family pyrin domain containing 3 protein-coding 383-168 chr18 68729742 68729965 + 2 NA intron (NM_001093729, intron 2 of 9) L1ME4b|LINE|L1 14637 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 685-77 chr5 97101854 97102386 + 2 NA intron (NM_153234, intron 4 of 5) intron (NM_153234, intron 4 of 5) 40491 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 512-195 chr4 97372202 97372593 + 2 NA intron (NR_102713, intron 1 of 5) intron (NR_102713, intron 1 of 5) 5471 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 112-12 chr13 82212076 82212157 + 2 NA Intergenic Intergenic -985133 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 362-361 chr5 147291252 147291568 + 2 NA intron (NM_001112724, intron 4 of 12) LTR49-int|LTR|ERV1 56384 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 396-355 chr8 120169335 120169680 + 2 NA intron (NM_021110, intron 5 of 47) L1ME3G|LINE|L1 44405 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 370-243 chr2 127441669 127441946 + 2 NA Intergenic L1MC2|LINE|L1 -18189 NR_039944 100616187 NR_039944 ENSG00000264075 MIR4783 - microRNA 4783 ncRNA 268-232 chr3 1836913 1837105 + 2 NA Intergenic MamRep605|LTR?|LTR? -261794 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 368-221 chr19 52002374 52002591 + 2 NA intron (NM_001321323, intron 1 of 4) intron (NM_001321323, intron 1 of 4) 5729 NM_001199324 284370 Hs.368355 NM_198480 ENSG00000197619 ZNF615 - zinc finger protein 615 protein-coding 266-105 chr14 32806299 32806456 + 2 NA intron (NM_004274, intron 12 of 13) intron (NM_004274, intron 12 of 13) -132502 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 265-109 chr14 67985948 67986192 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 162478 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 369-56 chr11 50375764 50375971 + 2 NA Intergenic ALR/Alpha|Satellite|centr -33280 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 354-109 chr12 88811424 88811713 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 208124 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 244-315 chr6 6179207 6179392 + 2 NA intron (NM_000129, intron 11 of 14) intron (NM_000129, intron 11 of 14) -9864 NR_107007 102466866 NR_107007 ENSG00000263572 MIR7853 hsa-mir-7853 microRNA 7853 ncRNA 236-101 chr13 47550276 47550477 + 2 NA Intergenic Intergenic 382246 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 213-36 chr10 43241075 43241243 + 2 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -11420 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 592-77 chr2 16805835 16806286 + 2 NA Intergenic L1M3|LINE|L1 -140226 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 529-105 chr2 78948423 78948838 + 2 NA Intergenic Intergenic -77072 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 262-232 chr2 186162501 186162710 + 2 NA Intergenic L1PA14|LINE|L1 -76288 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 521-68 chr12 66323281 66323696 + 2 NA intron (NM_001370285, intron 9 of 12) MIRb|SINE|MIR 20943 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 608-99 chr3 93828634 93829059 + 2 NA Intergenic L1PA3|LINE|L1 145235 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 342-84 chr11 7098747 7099057 + 2 NA Intergenic L1MB3|LINE|L1 9904 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 331-85 chr11 39624637 39624877 + 2 NA Intergenic L1ME3|LINE|L1 668373 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 238-201 chr20 13186739 13186913 + 2 NA Intergenic L1MCb|LINE|L1 -34448 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 490-152 chr2 127252536 127253004 + 2 NA Intergenic Intergenic -32471 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 316-50 chr10 3384849 3385158 + 2 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 66308 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 354-224 chr2 133342406 133342661 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 76338 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 527-190 chr4 66815933 66816386 + 2 NA Intergenic Intergenic 539335 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 252-69 chr11 58302495 58302714 + 2 NA Intergenic Intergenic -34344 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 333-343 chr3 27049635 27049911 + 2 NA Intergenic Intergenic 166750 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 399-328 chr9 78843647 78844014 + 2 NA Intergenic L1MA3|LINE|L1 301836 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 334-19 chr1 92655414 92655600 + 2 NA intron (NM_005665, intron 11 of 17) L1PB4|LINE|L1 129601 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 248-219 chr20 33798167 33798393 + 2 NA intron (NR_110623, intron 1 of 3) MLT1D|LTR|ERVL-MaLR 12819 NR_110623 101929746 Hs.504633 NR_110623 ENSG00000230753 ZNF341-AS1 - ZNF341 antisense RNA 1 ncRNA 340-550 chr8 120250557 120250768 + 2 NA exon (NM_021110, exon 22 of 48) exon (NM_021110, exon 22 of 48) 125560 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 496-116 chr18 5044529 5044888 + 2 NA Intergenic Intergenic -36474 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 282-229 chr2 144341842 144342081 + 2 NA Intergenic Intergenic -8892 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 645-124 chr8 102152012 102152489 + 2 NA Intergenic LTR16D1|LTR|ERVL 26818 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 381-171 chr19 46553234 46553556 + 2 NA intron (NM_001370550, intron 1 of 2) L1MB7|LINE|L1 47521 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 542-102 chr2 114434134 114434470 + 2 NA Intergenic Intergenic -8339 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 604-103 chr22 35242266 35242701 + 2 NA Intergenic L1MDa|LINE|L1 -11427 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 259-19 chr1 168958345 168958512 + 2 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 128577 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 216-16 chr1 106032299 106032503 + 2 NA Intergenic Intergenic -4148 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 222-395 chrX 78966693 78966848 + 2 NA Intergenic Intergenic 21379 NM_014499 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 387-335 chr7 20484662 20484939 + 2 NA Intergenic Intergenic -130867 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 216-255 chr4 94346029 94346195 + 2 NA Intergenic Intergenic -3276 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 345-76 chr10 111198551 111198872 + 2 NA Intergenic Intergenic 84420 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 252-363 chr6 44544333 44544540 + 2 NA Intergenic Intergenic 7445 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 421-123 chr19 57670962 57671263 + 2 NA intron (NM_152677, intron 2 of 4) AluJb|SINE|Alu 2177 NM_152677 201516 Hs.469663 NM_152677 ENSG00000180532 ZSCAN4 ZNF494 zinc finger and SCAN domain containing 4 protein-coding 229-108 chr14 41473253 41473457 + 2 NA Intergenic L1M1|LINE|L1 -133501 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 337-124 chr12 113626413 113626594 + 2 NA Intergenic L1M5|LINE|L1 147180 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 435-114 chr19 57055606 57055935 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -64371 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 620-88 chr3 70166632 70167228 + 2 NA Intergenic Intergenic 145708 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 357-62 chr11 42843560 42843799 + 2 NA Intergenic L2b|LINE|L2 425690 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 319-88 chr11 55083884 55084070 + 2 NA Intergenic ALR/Alpha|Satellite|centr -178178 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 388-331 chr7 89264993 89265347 + 2 NA intron (NM_181646, intron 2 of 3) MER117|DNA|hAT-Charlie -469433 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 245-289 chr5 115126676 115126810 + 2 NA exon (NM_018700, exon 10 of 10) exon (NM_018700, exon 10 of 10) 43165 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 528-41 chr10 104088457 104088830 + 2 NA Intergenic Intergenic -2763 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 200-125 chr2 50377978 50378138 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -30302 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 461-283 chr8 141876129 141876583 + 2 NA Intergenic Intergenic -90043 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 371-397 chr8 135302701 135302936 + 2 NA Intergenic L2b|LINE|L2 68687 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 1086-14 chr2 83418323 83419184 + 2 NA Intergenic L1PB4|LINE|L1 -104061 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 370-454 chr8 131306268 131306591 + 2 NA Intergenic L1M2|LINE|L1 -265520 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 217-204 chr20 24899458 24899661 + 2 NA Intergenic LTR28|LTR|ERV1 -49710 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 534-89 chr17 70900424 70900899 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 301518 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 637-102 chr6 102480034 102480441 + 2 NA Intergenic Intergenic 1081252 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 296-206 chr19 53146717 53146902 + 2 NA intron (NM_001172675, intron 4 of 4) L1M1|LINE|L1 12244 NM_032584 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 218-31 chr10 88075428 88075634 + 2 NA Intergenic MIRb|SINE|MIR 211906 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 290-28 chr1 188191007 188191200 + 2 NA Intergenic (AAAG)n|Simple_repeat|Simple_repeat 747475 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 263-171 chr18 48212252 48212440 + 2 NA intron (NM_001371285, intron 1 of 5) L1MC1|LINE|L1 -18420 NM_001371288 307-522 chr9 94770799 94771053 + 2 NA intron (NM_001193331, intron 2 of 7) MLT1F1|LTR|ERVL-MaLR 11277 NM_001193329 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 237-83 chr12 97237384 97237564 + 2 NA Intergenic Intergenic -225302 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 468-211 chr3 154991140 154991417 + 2 NA Intergenic L1MA5A|LINE|L1 -32846 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 298-420 chr7 17187981 17188204 + 2 NA Intergenic Intergenic -110560 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 341-405 chr4 159127593 159127827 + 2 NA intron (NM_001351724, intron 1 of 30) intron (NM_001351724, intron 1 of 30) -1095 NR_039963 100616303 NR_039963 ENSG00000283379 MIR3688-2 mir-3688-2 microRNA 3688-2 ncRNA 309-575 chr9 34775018 34775186 + 2 NA Intergenic L1MB3|LINE|L1 -45614 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 514-261 chr7 18281313 18281651 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -8610 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 330-32 chr1 176955428 176955644 + 2 NA intron (NM_207108, intron 11 of 21) intron (NM_207108, intron 11 of 21) 73909 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 327-447 chr6 159042048 159042227 + 2 NA exon (NM_001278733, exon 1 of 6) exon (NM_001278733, exon 1 of 6) 216 NM_001278733 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 273-121 chr13 88429398 88429644 + 2 NA Intergenic Intergenic -111308 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 486-285 chr7 104771328 104771749 + 2 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 32554 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 490-63 chr12 9785218 9785578 + 2 NA Intergenic LOR1-int|LTR|ERV1 -14654 NR_159359 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 531-78 chr16 12913366 12913843 + 2 NA intron (NM_001145204, intron 1 of 4) L1MB7|LINE|L1 12006 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 323-555 chr8 89603226 89603487 + 2 NA Intergenic LTR52|LTR|ERVL 154355 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 414-287 chr6 120341722 120342030 + 2 NA Intergenic L1M5|LINE|L1 326697 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 228-300 chr6 139663282 139663468 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -107698 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 196-201 chr5 26315555 26315717 + 2 NA Intergenic Intergenic 722950 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 529-136 chr3 8704575 8704947 + 2 NA Intergenic Intergenic -29039 NM_033337 859 Hs.98303 NM_001234 ENSG00000182533 CAV3 LGMD1C|LQT9|MPDT|RMD2|VIP-21|VIP21 caveolin 3 protein-coding 252-445 chr9 29129809 29130048 + 2 NA intron (NM_001354574, intron 1 of 5) LOR1-int|LTR|ERV1 82371 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 365-69 chr11 35509585 35509897 + 2 NA intron (NM_015430, intron 1 of 11) intron (NM_015430, intron 1 of 11) 15875 NM_015430 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 443-290 chr8 59496991 59497370 + 2 NA Intergenic Intergenic 377970 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 303-50 chr10 81806779 81806936 + 2 NA Intergenic L1MC1|LINE|L1 -68337 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 166-8 chr10 65895720 65895826 + 2 NA Intergenic Intergenic 324348 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 596-113 chr20 54033221 54033651 + 2 NA intron (NM_001366297, intron 3 of 8) L1PA13|LINE|L1 25584 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 240-251 chr2 227084408 227084605 + 2 NA intron (NM_000092, intron 22 of 47) intron (NM_000092, intron 22 of 47) 80053 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 368-380 chr5 155831736 155832065 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -494857 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 230-113 chr14 54821516 54821726 + 2 NA Intergenic AluJo|SINE|Alu 56572 NR_036194 100422984 NR_036194 ENSG00000265432 MIR4308 - microRNA 4308 ncRNA 502-208 chr5 2652002 2652497 + 2 NA Intergenic L1M6|LINE|L1 -60342 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 302-210 chr2 59134706 59134872 + 2 NA Intergenic AluSx1|SINE|Alu -82919 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 663-95 chr6 120733721 120734137 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 600551 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 185-98 chr2 99147023 99147144 + 2 NA 5' UTR (NM_001317992, exon 3 of 5) 5' UTR (NM_001317992, exon 3 of 5) -5380 NM_182911 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 410-215 chr4 60128080 60128466 + 2 NA Intergenic Intergenic -794346 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 243-299 chr3 118019282 118019509 + 2 NA Intergenic Intergenic -328470 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 370-10 chr1 86063616 86063917 + 2 NA intron (NM_152890, intron 7 of 59) intron (NM_152890, intron 7 of 59) 92705 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 324-412 chr4 175230798 175231014 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 312548 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 255-311 chr5 5604931 5605124 + 2 NA Intergenic Intergenic 182350 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 226-135 chr18 7147056 7147224 + 2 NA Intergenic MIRc|SINE|MIR -29343 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 196-25 chr10 9035971 9036157 + 2 NA Intergenic MIR|SINE|MIR 138075 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 458-237 chr7 54521666 54522001 + 2 NA Intergenic L1PB1|LINE|L1 -20492 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 376-322 chr5 52117354 52117604 + 2 NA Intergenic Intergenic 109448 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 349-302 chr21 22893010 22893351 + 2 NA Intergenic Intergenic -186104 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 462-196 chr4 35773658 35774068 + 2 NA Intergenic Intergenic 470076 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 467-232 chr5 116640368 116640715 + 2 NA Intergenic L2a|LINE|L2 -65718 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 226-316 chr7 4254596 4254783 + 2 NA intron (NM_001079653, intron 18 of 19) L1MB7|LINE|L1 -119852 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 540-165 chr4 166770635 166770996 + 2 NA intron (NM_001204356, intron 6 of 9) L1MEc|LINE|L1 463611 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 399-297 chr8 9326708 9326961 + 2 NA intron (NR_040039, intron 2 of 2) L1MA5A|LINE|L1 1783 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 351-195 chr19 27616822 27617011 + 2 NA Intergenic ALR/Alpha|Satellite|centr -176515 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 534-25 chr10 26378998 26379368 + 2 NA Intergenic Intergenic -59158 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 475-295 chr9 30531424 30531750 + 2 NA Intergenic LTR1D|LTR|ERV1 -123133 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 360-286 chr22 49251988 49252314 + 2 NA Intergenic Intergenic 291315 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 181-36 chr13 77923485 77923646 + 2 NA intron (NM_000115, intron 1 of 7) intron (NM_000115, intron 1 of 7) -3797 NM_001201397 1910 Hs.82002 NM_000115 ENSG00000136160 EDNRB ABCDS|ET-B|ET-BR|ETB|ETB1|ETBR|ETRB|HSCR|HSCR2|WS4A endothelin receptor type B protein-coding 210-29 chr10 55883111 55883246 + 2 NA Intergenic L1PA15|LINE|L1 -255236 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 203-215 chr7 24300908 24301040 + 2 NA Intergenic L1MEd|LINE|L1 16784 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 310-430 chr5 148054577 148054856 + 2 NA Intergenic MER67A|LTR|ERV1 -9256 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 368-165 chr15 87417257 87417532 + 2 NA Intergenic Intergenic -159535 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 258-171 chr18 50088015 50088234 + 2 NA intron (NM_001080467, intron 1 of 39) intron (NM_001080467, intron 1 of 39) 38439 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 225-360 chr8 100563924 100564091 + 2 NA Intergenic Intergenic -4248 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 361-99 chr12 29839619 29839879 + 2 NA Intergenic L1MA3|LINE|L1 -54990 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 367-258 chr21 23485426 23485703 + 2 NA Intergenic Intergenic -100729 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 289-422 chr6 133066408 133066684 + 2 NA Intergenic Intergenic -21534 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 398-127 chr16 54490852 54491237 + 2 NA Intergenic Intergenic -120345 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 260-250 chr21 30826956 30827110 + 2 NA Intergenic L3|LINE|CR1 2726 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 160-25 chr13 93013600 93013727 + 2 NA Intergenic Intergenic -31678 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 145-49 chr2 126847675 126847774 + 2 NA Intergenic L1ME2z|LINE|L1 -51166 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 239-82 chr12 130432915 130433087 + 2 NA intron (NM_001351232, intron 14 of 14) LTR51|LTR|ERV1 95114 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 145-65 chr4 93523257 93523341 + 2 NA intron (NM_001286838, intron 12 of 14) MER94|DNA|hAT-Blackjack -305454 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 180-89 chr2 138410049 138410164 + 2 NA Intergenic L1MA10|LINE|L1 -91664 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 240-434 chr9 10633003 10633190 + 2 NA Intergenic Intergenic 19890 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 306-509 chr8 90779039 90779270 + 2 NA Intergenic L1PA17|LINE|L1 -12621 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 418-124 chr2 124029550 124029914 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 4445 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 297-287 chr3 17665546 17665818 + 2 NA intron (NM_001134381, intron 1 of 23) X2_LINE|LINE|CR1 34338 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 304-341 chr3 82882897 82883153 + 2 NA Intergenic Intergenic 896883 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 377-224 chr2 147213858 147214198 + 2 NA Intergenic L2c|LINE|L2 626971 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 222-120 chr15 69383026 69383246 + 2 NA intron (NM_001104554, intron 4 of 8) intron (NM_001104554, intron 4 of 8) -31213 NM_001367804 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 320-209 chr17 61610743 61610958 + 2 NA Intergenic Intergenic -19631 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 339-290 chr2 180225396 180225691 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -218246 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 499-66 chr13 64206596 64206985 + 2 NA Intergenic LTR2752|LTR|ERV1 -130779 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 267-38 chr10 7972012 7972202 + 2 NA intron (NM_031923, intron 3 of 6) intron (NM_031923, intron 3 of 6) 80384 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 473-242 chr6 83768297 83768603 + 2 NA Intergenic L2c|LINE|L2 59008 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 381-238 chr22 49596884 49597150 + 2 NA intron (NR_110523, intron 1 of 4) Charlie22a|DNA|hAT-Charlie -53551 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 329-264 chr2 26895963 26896258 + 2 NA intron (NM_001253724, intron 1 of 12) L1MA8|LINE|L1 47686 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 229-26 chr10 27898087 27898227 + 2 NA intron (NM_001290021, intron 10 of 13) (TTACAT)n|Simple_repeat|Simple_repeat 83714 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 752-40 chr2 116238601 116239300 + 2 NA Intergenic Intergenic 895135 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 248-336 chr6 18405377 18405594 + 2 NA intron (NM_182757, intron 2 of 7) intron (NM_182757, intron 2 of 7) 18135 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 755-17 chr12 13379722 13380349 + 2 NA Intergenic Intergenic -3290 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 902-24 chr2 234853638 234854217 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -98090 NM_014521 23677 Hs.516777 NM_014521 ENSG00000130147 SH3BP4 BOG25|TTP SH3 domain binding protein 4 protein-coding 314-391 chr3 126886660 126886858 + 2 NA intron (NM_032343, intron 5 of 7) intron (NM_032343, intron 5 of 7) -101835 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 327-87 chr11 57040861 57041058 + 2 NA Intergenic L1MA9|LINE|L1 3425 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 332-94 chr11 59720954 59721195 + 2 NA Intergenic AluSx|SINE|Alu -7229 NM_001005324 390201 Hs.589001 NM_001005324 ENSG00000172289 OR10V1 OR11-256 olfactory receptor family 10 subfamily V member 1 protein-coding 196-66 chr14 34204875 34205036 + 2 NA Intergenic Intergenic -253881 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 237-101 chr14 50373405 50373618 + 2 NA intron (NM_001282236, intron 2 of 8) L1ME3G|LINE|L1 23370 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 525-258 chr8 85017189 85017524 + 2 NA Intergenic Intergenic -89882 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 356-517 chrX 74085006 74085289 + 2 NA intron (NR_028379, intron 5 of 6) L1MC4|LINE|L1 133314 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 159-75 chr5 83068666 83068797 + 2 NA intron (NM_174909, intron 1 of 3) intron (NM_174909, intron 1 of 3) -4394 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 478-75 chr14 47418260 47418554 + 2 NA intron (NM_001113498, intron 1 of 16) MLT1A0|LTR|ERVL-MaLR -75161 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 476-93 chr15 58576438 58576816 + 2 NA Intergenic Intergenic -77892 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 195-117 chr2 151639928 151640053 + 2 NA exon (NM_004543, exon 62 of 149) exon (NM_004543, exon 62 of 149) 94486 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 269-440 chrX 96022608 96022818 + 2 NA Intergenic L1MB2|LINE|L1 315189 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 118-45 chr5 159749287 159749354 + 2 NA Intergenic Intergenic 122064 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 535-14 chr1 83783496 83783845 + 2 NA intron (NR_119375, intron 1 of 2) L1ME2|LINE|L1 76876 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 287-51 chr10 48943782 48944054 + 2 NA intron (NM_020945, intron 49 of 61) intron (NM_020945, intron 49 of 61) -29683 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 286-283 chr3 80553677 80553952 + 2 NA Intergenic L2|LINE|L2 -211083 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 339-336 chr22 27058594 27058861 + 2 NA intron (NM_001318329, intron 1 of 1) intron (NM_001318329, intron 1 of 1) 1791 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 243-303 chr3 134979293 134979476 + 2 NA intron (NM_004441, intron 3 of 15) intron (NM_004441, intron 3 of 15) 184124 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 368-325 chr4 43993959 43994214 + 2 NA Intergenic Intergenic -22775 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 303-217 chr2 119671612 119671848 + 2 NA Intergenic L2a|LINE|L2 -7437 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 353-55 chr10 44359025 44359254 + 2 NA Intergenic Intergenic 25958 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 372-453 chr7 37380000 37380311 + 2 NA intron (NM_001206480, intron 1 of 21) LTR51|LTR|ERV1 -26487 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 350-487 chr7 91290608 91290806 + 2 NA Intergenic Intergenic 26274 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 326-350 chr3 122128483 122128760 + 2 NA Intergenic L1P4|LINE|L1 50772 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 365-133 chr15 73806137 73806367 + 2 NA Intergenic MamRep605|LTR?|LTR? 38038 NR_120352 101929221 NR_120352 INSYN1-AS1 C15orf59-AS1 INSYN1 antisense RNA 1 ncRNA 324-385 chr4 54127861 54128090 + 2 NA Intergenic L1MA2|LINE|L1 27812 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 572-38 chr12 25430230 25430691 + 2 NA Intergenic L1MEf|LINE|L1 122823 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 411-231 chr5 93187995 93188316 + 2 NA Intergenic Intergenic 383188 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 283-85 chr11 84023911 84024170 + 2 NA intron (NM_001142699, intron 11 of 27) Tigger2|DNA|TcMar-Tigger 249240 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 159-70 chr4 141591992 141592119 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -44528 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 336-26 chr1 88466044 88466332 + 2 NA Intergenic Intergenic -217956 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 220-222 chr3 54055222 54055399 + 2 NA Intergenic Intergenic -67242 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 440-31 chr10 126811033 126811373 + 2 NA Intergenic L1MEf|LINE|L1 -94206 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 324-521 chr8 61969763 61969940 + 2 NA Intergenic Intergenic 80012 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 263-379 chr7 5691063 5691277 + 2 NA intron (NM_207111, intron 13 of 16) intron (NM_207111, intron 13 of 16) -10709 NR_046834 100874342 Hs.665728 NR_046834 ENSG00000237738 RNF216-IT1 - RNF216 intronic transcript 1 ncRNA 249-348 chr5 179082011 179082184 + 2 NA 3' UTR (NM_014594, exon 5 of 5) 3' UTR (NM_014594, exon 5 of 5) 21724 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 499-107 chr2 139285 139692 + 2 NA Intergenic Intergenic -92983 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 442-267 chr6 167228761 167229138 + 2 NA intron (NR_157263, intron 1 of 3) HUERS-P1-int|LTR|ERV1 649 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 391-99 chr14 47979558 47979765 + 2 NA Intergenic Intergenic -184647 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 251-69 chr12 59717192 59717352 + 2 NA intron (NM_001270623, intron 3 of 5) intron (NM_001270623, intron 3 of 5) 27902 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 479-129 chr20 53320799 53321259 + 2 NA intron (NM_173485, intron 2 of 2) Charlie18a|DNA|hAT-Charlie 135746 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 369-224 chr2 183365152 183365381 + 2 NA Intergenic L1MA4A|LINE|L1 240823 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 485-166 chr20 43512470 43512871 + 2 NA intron (NM_032107, intron 1 of 21) MER3|DNA|hAT-Charlie -1771 NM_015478 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 394-237 chr4 60231825 60232118 + 2 NA Intergenic L1PA15-16|LINE|L1 -690648 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 231-234 chr3 95077738 95077932 + 2 NA Intergenic L1MA4|LINE|L1 139572 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 197-71 chr16 64944022 64944162 + 2 NA 3' UTR (NM_001308392, exon 14 of 14) 3' UTR (NM_001308392, exon 14 of 14) 177971 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 309-475 chr6 61920803 61921073 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 346808 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 195-261 chr9 91640999 91641170 + 2 NA Intergenic LTR50|LTR|ERVL -4739 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 309-526 chr8 13722736 13722948 + 2 NA Intergenic L1PA17|LINE|L1 93152 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 286-259 chr21 27632113 27632265 + 2 NA Intergenic Intergenic -90190 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 521-138 chr20 95189 95557 + 2 NA intron (NM_153325, intron 1 of 1) L2a|LINE|L2 7701 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 701-54 chr20 53530222 53530826 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -22246 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 517-24 chr1 244391229 244391643 + 2 NA Intergenic AluSx|SINE|Alu 38801 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 304-351 chr3 114754517 114754674 + 2 NA intron (NM_001164343, intron 4 of 11) intron (NM_001164343, intron 4 of 11) 4512 NM_001164344 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 533-243 chr9 31927223 31927587 + 2 NA Intergenic Intergenic -457198 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 232-264 chr4 45520338 45520533 + 2 NA Intergenic L1P3|LINE|L1 603619 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 237-250 chr3 114370374 114370519 + 2 NA intron (NR_038993, intron 6 of 8) intron (NR_038993, intron 6 of 8) 13196 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 284-68 chr11 33442466 33442625 + 2 NA intron (NM_012194, intron 1 of 20) L1MEd|LINE|L1 66437 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 922-7 chr11 115450981 115451646 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 53102 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 635-15 chr10 91605636 91606036 + 2 NA intron (NR_024467, intron 1 of 4) Tigger15a|DNA|TcMar-Tigger 5624 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 409-225 chr4 104427850 104428160 + 2 NA Intergenic Intergenic -62960 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 256-52 chr10 106433342 106433504 + 2 NA Intergenic L1M4|LINE|L1 293258 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 579-40 chr14 76266344 76266785 + 2 NA Intergenic AluSx1|SINE|Alu -104783 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 137-58 chr20 55179821 55179922 + 2 NA Intergenic Intergenic -243172 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 522-125 chr2 37689218 37689677 + 2 NA Intergenic Intergenic -16912 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 599-91 chr3 126429172 126429639 + 2 NA intron (NM_182628, intron 13 of 16) L1M3c|LINE|L1 34496 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 356-104 chr12 28892873 28893199 + 2 NA Intergenic MIR3|SINE|MIR -256242 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 287-400 chr8 77597374 77597527 + 2 NA Intergenic L1M4c|LINE|L1 146753 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 609-80 chr3 119064118 119064637 + 2 NA intron (NM_152538, intron 3 of 8) L1MEg|LINE|L1 -29531 NM_001353321 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 184-189 chrX 79062986 79063128 + 2 NA Intergenic L1MA4|LINE|L1 -107915 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 301-438 chr8 36274106 36274376 + 2 NA Intergenic Intergenic -510133 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 374-34 chr10 60189315 60189665 + 2 NA intron (NM_001204403, intron 17 of 43) intron (NM_001204403, intron 17 of 43) -48474 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 217-146 chr16 80869865 80869986 + 2 NA intron (NR_131948, intron 1 of 2) L1MD2|LINE|L1 22671 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 612-61 chr2 45550777 45551267 + 2 NA intron (NM_018079, intron 12 of 20) intron (NM_018079, intron 12 of 20) 60245 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 675-24 chr12 133040700 133041262 + 2 NA intron (NM_001289972, intron 1 of 4) MIRb|SINE|MIR 3399 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 452-222 chr5 165531448 165531855 + 2 NA Intergenic Intergenic 1061372 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 418-12 chr1 160570857 160571150 + 2 NA intron (NM_003874, intron 1 of 6) MLT1J|LTR|ERVL-MaLR 8493 NM_003874 8832 Hs.398093 NM_003874 ENSG00000066294 CD84 LY9B|SLAMF5|hCD84|mCD84 CD84 molecule protein-coding 449-24 chr10 11555701 11556079 + 2 NA intron (NM_014688, intron 2 of 14) L1MEg|LINE|L1 -23610 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 220-69 chr11 60040052 60040212 + 2 NA promoter-TSS (NM_173801) promoter-TSS (NM_173801) -277 NM_173801 219990 Hs.132310 NM_173801 ENSG00000149507 OOSP2 OOSP2A|PLAC1L|TMEM122 oocyte secreted protein 2 protein-coding 712-4 chr1 118724055 118724636 + 2 NA Intergenic L1MB1|LINE|L1 263998 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 182-176 chr8 138296379 138296505 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 200819 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 397-221 chr4 43732755 43733120 + 2 NA Intergenic LTR22E|LTR|ERVK -240394 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 167-26 chr11 81344056 81344164 + 2 NA Intergenic Intergenic 546726 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 207-214 chr4 56734764 56734911 + 2 NA Intergenic Intergenic -53131 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 346-426 chr6 71365216 71365554 + 2 NA Intergenic Intergenic 11646 NR_029598 407032 NR_029598 ENSG00000199094 MIR30C2 MIRN30C2|mir-30c-2 microRNA 30c-2 ncRNA 327-508 chr8 138845551 138845842 + 2 NA intron (NM_152888, intron 3 of 64) MIRc|SINE|MIR 68345 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 537-30 chr10 81084990 81085520 + 2 NA Intergenic L1MA9|LINE|L1 435458 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 290-182 chr18 37961774 37961959 + 2 NA Intergenic MIRc|SINE|MIR 304731 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 553-248 chr9 80848476 80848984 + 2 NA Intergenic Intergenic 840805 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 163-99 chr4 125127129 125127235 + 2 NA Intergenic Intergenic -189230 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 214-280 chr6 90101246 90101374 + 2 NA intron (NM_021813, intron 4 of 8) L1MB7|LINE|L1 195533 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 315-86 chr11 77566807 77566976 + 2 NA Intergenic L1MA3|LINE|L1 -4198 NR_130930 646029 Hs.609654 NM_001039908 LOC646029 - uncharacterized LOC646029 ncRNA 295-298 chr3 80091255 80091519 + 2 NA Intergenic Intergenic -323389 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 336-127 chr12 39301193 39301515 + 2 NA intron (NM_001173464, intron 37 of 37) intron (NM_001173464, intron 37 of 37) 141766 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 335-461 chr6 53114448 53114725 + 2 NA Intergenic MIR|SINE|MIR 34255 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 240-313 chr4 40794097 40794319 + 2 NA intron (NM_024677, intron 8 of 11) intron (NM_024677, intron 8 of 11) 44253 NM_024677 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 284-294 chr4 114096748 114096972 + 2 NA Intergenic Intergenic -117213 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 435-82 chr14 77172453 77172776 + 2 NA Intergenic AluSz|SINE|Alu -9184 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 243-76 chr11 106173353 106173527 + 2 NA Intergenic MER4A1|LTR|ERV1 -41324 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 389-97 chr14 42503740 42504099 + 2 NA Intergenic Intergenic 897063 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 421-301 chr8 92341824 92342129 + 2 NA Intergenic L1MA9|LINE|L1 -238591 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 317-21 chr1 112041601 112041789 + 2 NA Intergenic Intergenic 51159 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 307-91 chr11 98810691 98810967 + 2 NA Intergenic Intergenic -210120 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 383-145 chr16 60805463 60805779 + 2 NA Intergenic L1P2|LINE|L1 250145 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 114-29 chr2 139745126 139745222 + 2 NA Intergenic Intergenic 841511 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 573-167 chr6 81574255 81574721 + 2 NA Intergenic Intergenic 178193 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 252-147 chr16 63777000 63777207 + 2 NA Intergenic Intergenic 1344960 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 236-19 chr1 166369930 166370152 + 2 NA Intergenic L1MB8|LINE|L1 119998 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 415-150 chr2 239896860 239897142 + 2 NA intron (NR_136158, intron 9 of 10) intron (NR_136158, intron 9 of 10) 46093 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 289-299 chr3 46277681 46277868 + 2 NA Intergenic Intergenic 35314 NM_001164680 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 283-254 chr2 226213786 226214030 + 2 NA Intergenic Intergenic 71114 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 375-317 chr5 28671245 28671570 + 2 NA Intergenic L1M5|LINE|L1 -255463 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 503-137 chr19 51973664 51974161 + 2 NA intron (NM_021632, intron 2 of 4) L4_B_Mam|LINE|RTE-X 12928 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 383-15 chr1 104286229 104286573 + 2 NA Intergenic Intergenic 213378 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 245-157 chr17 48079382 48079529 + 2 NA intron (NM_001127228, intron 1 of 4) intron (NM_001127228, intron 1 of 4) 21731 NM_006807 10951 Hs.77254 NM_006807 ENSG00000108468 CBX1 CBX|HP1-BETA|HP1Hs-beta|HP1Hsbeta|M31|MOD1|p25beta chromobox 1 protein-coding 278-436 chr8 134059946 134060115 + 2 NA Intergenic L1MA7|LINE|L1 173534 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 297-169 chr17 13168619 13168872 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 138015 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 951-2 chr1 169000538 169001196 + 2 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 86138 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 331-115 chr12 38734305 38734615 + 2 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 171131 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 1036-4 chr10 129483562 129484232 + 2 NA intron (NM_002412, intron 1 of 4) (ATAG)n|Simple_repeat|Simple_repeat 16656 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 318-413 chr4 129712504 129712715 + 2 NA Intergenic Intergenic 58869 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 329-16 chr1 98607407 98607666 + 2 NA Intergenic L1M5|LINE|L1 -54185 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 439-127 chr2 37164475 37164855 + 2 NA Intergenic L1MEc|LINE|L1 -7618 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 269-112 chr14 45187481 45187656 + 2 NA intron (NM_001308133, intron 17 of 21) MIRc|SINE|MIR 51629 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 230-159 chr19 51651176 51651324 + 2 NA Intergenic Intergenic -4371 NM_001098612 100049587 Hs.707374 NM_001098612 ENSG00000254415 SIGLEC14 - sialic acid binding Ig like lectin 14 protein-coding 320-368 chr3 172896840 172897062 + 2 NA intron (NM_031955, intron 10 of 10) L1MD1|LINE|L1 145949 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 517-268 chr8 101977246 101977651 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -6984 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 603-148 chr7 9862416 9862934 + 2 NA Intergenic L1PA15|LINE|L1 228405 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 251-408 chr8 138269786 138270015 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -186355 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 259-150 chr16 26708499 26708747 + 2 NA Intergenic Intergenic -358304 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 364-446 chr8 87688801 87688994 + 2 NA Intergenic MamGyp-int|LTR|Gypsy 185118 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 305-395 chr4 88625399 88625664 + 2 NA intron (NM_001318505, intron 3 of 8) L1ME1|LINE|L1 33051 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 352-313 chr3 34561735 34561946 + 2 NA Intergenic L1MC4a|LINE|L1 763210 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 488-204 chr5 28546868 28547204 + 2 NA Intergenic Intergenic -259371 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 450-110 chr17 6329653 6330070 + 2 NA Intergenic Intergenic 105260 NM_001285401 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 366-333 chr4 174946183 174946501 + 2 NA intron (NM_001130704, intron 3 of 3) L1PA15|LINE|L1 27984 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 352-196 chr18 52630241 52630446 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 290146 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 606-162 chr8 95663609 95664179 + 2 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 284454 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 643-57 chr2 132893107 132893580 + 2 NA intron (NM_207481, intron 8 of 17) L1ME3B|LINE|L1 -22214 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 198-85 chr16 83052390 83052521 + 2 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -62157 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 372-13 chr1 65790666 65790941 + 2 NA Intergenic Intergenic -1707 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 257-89 chr12 25849680 25849890 + 2 NA Intergenic MIR|SINE|MIR 24294 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 251-138 chr18 13317199 13317413 + 2 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 39201 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 311-245 chr2 49796404 49796645 + 2 NA Intergenic AluJo|SINE|Alu 177679 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 431-322 chr9 110717349 110717747 + 2 NA intron (NM_001166281, intron 5 of 11) L1MEi|LINE|L1 -10714 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 258-182 chr2 50122022 50122233 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -147924 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 286-46 chr10 83444925 83445146 + 2 NA Intergenic LTR9|LTR|ERV1 232054 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 255-284 chr4 15172116 15172267 + 2 NA intron (NR_125911, intron 2 of 5) HAL1ME|LINE|L1 -167797 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 308-300 chr3 88239353 88239604 + 2 NA Intergenic Intergenic 89519 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 255-19 chr10 9714700 9714901 + 2 NA Intergenic Intergenic -343922 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 233-108 chr15 64552024 64552215 + 2 NA intron (NM_015042, intron 1 of 8) L1M4|LINE|L1 52699 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 337-244 chr2 36130298 36130589 + 2 NA Intergenic Intergenic 225127 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 257-8 chr1 77550439 77550583 + 2 NA intron (NM_012093, intron 13 of 13) intron (NM_012093, intron 13 of 13) 132147 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 232-116 chr15 88351461 88351649 + 2 NA Intergenic Intergenic -94816 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 306-81 chr11 80427819 80428051 + 2 NA Intergenic Intergenic 334868 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 291-432 chr8 50473331 50473504 + 2 NA intron (NR_135797, intron 8 of 20) THE1D|LTR|ERVL-MaLR 309286 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 243-456 chr8 116894842 116895065 + 2 NA Intergenic L1MA4|LINE|L1 -20087 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 256-65 chr11 41494341 41494521 + 2 NA Intergenic Intergenic -34779 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 349-147 chr13 78682097 78682403 + 2 NA Intergenic Intergenic -23095 NM_024546 79596 Hs.567576 NM_024546 ENSG00000152193 OBI1 C13orf7|RNF219 ORC ubiquitin ligase 1 protein-coding 421-125 chr2 7233092 7233442 + 2 NA Intergenic L2|LINE|L2 -155387 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 195-99 chr2 7941974 7942151 + 2 NA intron (NR_015405, intron 2 of 2) MER53|DNA|hAT 34752 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 459-21 chr1 218967606 218967980 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) -49282 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 255-302 chr4 100009440 100009678 + 2 NA intron (NR_125923, intron 1 of 3) intron (NR_125923, intron 1 of 3) 59065 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 313-414 chr4 188574232 188574434 + 2 NA intron (NR_033869, intron 4 of 4) MLT1E1A|LTR|ERVL-MaLR 118755 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 327-203 chr17 73743925 73744189 + 2 NA intron (NM_001278587, intron 2 of 5) intron (NM_001278587, intron 2 of 5) 6203 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 273-204 chr2 23569085 23569296 + 2 NA intron (NM_052920, intron 3 of 13) intron (NM_052920, intron 3 of 13) 184011 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 299-43 chr10 26058871 26059028 + 2 NA intron (NM_017433, intron 10 of 34) L1MC1|LINE|L1 124720 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 512-27 chr10 25268311 25268723 + 2 NA intron (NM_020752, intron 2 of 10) L1ME1|LINE|L1 -92241 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 268-246 chr3 89726341 89726551 + 2 NA Intergenic Intergenic 618825 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 337-111 chr12 23624403 23624634 + 2 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -39932 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 219-373 chr8 136070234 136070390 + 2 NA Intergenic Intergenic -460486 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 207-212 chr4 44144960 44145098 + 2 NA Intergenic Intergenic 127967 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 362-58 chr10 45476533 45476784 + 2 NA intron (NM_001282866, intron 3 of 7) L1MA4A|LINE|L1 -23537 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 322-503 chr7 90657852 90658147 + 2 NA intron (NM_001287135, intron 2 of 14) L1MC4a|LINE|L1 -51399 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 343-380 chr4 43177998 43178256 + 2 NA Intergenic Intergenic 284861 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 320-495 chr6 131622063 131622298 + 2 NA intron (NM_015979, intron 5 of 30) intron (NM_015979, intron 5 of 30) 6062 NM_015979 9439 Hs.29679 NM_004830 ENSG00000112282 MED23 ARC130|CRSP130|CRSP133|CRSP3|DRIP130|MRT18|SUR-2|SUR2 mediator complex subunit 23 protein-coding 331-159 chr14 62508877 62509120 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -369025 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 394-335 chr8 130859069 130859325 + 2 NA intron (NM_001115, intron 9 of 17) L1MC3|LINE|L1 181712 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 303-366 chr5 97598624 97598840 + 2 NA intron (NR_105028, intron 2 of 3) L1MA7|LINE|L1 94036 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 329-614 chr9 121026389 121026691 + 2 NA intron (NM_001735, intron 8 of 40) MER20|DNA|hAT-Charlie 23735 NM_001317164 727 Hs.494997 NM_001735 ENSG00000106804 C5 C5D|C5a|C5b|CPAMD4|ECLZB complement C5 protein-coding 304-89 chr11 99144601 99144899 + 2 NA intron (NM_001243270, intron 1 of 23) L1M2|LINE|L1 123801 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 311-457 chr7 10357729 10357973 + 2 NA Intergenic PABL_A|LTR|ERV1 -344825 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 246-354 chr6 123433394 123433595 + 2 NA intron (NM_001251987, intron 12 of 20) L2a|LINE|L2 -6110 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 777-40 chr21 18123747 18124221 + 2 NA intron (NM_001204178, intron 2 of 5) AluSx1|SINE|Alu -120849 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 338-537 chr8 66395877 66396204 + 2 NA Intergenic L1MB3|LINE|L1 32937 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 604-89 chr2 141716534 141716905 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 414982 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 258-370 chr7 68153768 68153954 + 2 NA Intergenic L1M6|LINE|L1 133608 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 289-376 chr5 95297120 95297356 + 2 NA Intergenic LTR81B|LTR|Gypsy -12663 NM_024717 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 471-235 chr6 121974885 121975197 + 2 NA Intergenic HAL1M8|LINE|L1 -424510 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 251-422 chr9 99684702 99684884 + 2 NA intron (NR_109802, intron 3 of 6) AluJb|SINE|Alu 135096 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 349-35 chr1 214556837 214557093 + 2 NA Intergenic Intergenic -5363 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 368-88 chr11 100431438 100431751 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -255694 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 334-336 chr3 27614385 27614684 + 2 NA Intergenic MER20|DNA|hAT-Charlie 107789 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 242-259 chr4 59637750 59637892 + 2 NA Intergenic L1PA15|LINE|L1 624248 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 412-167 chr2 119856745 119857113 + 2 NA intron (NM_002830, intron 2 of 26) HUERS-P3-int|LTR|ERV1 97007 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 275-382 chr9 76531145 76531348 + 2 NA Intergenic Intergenic 30613 NM_001097636 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 440-3 chr1 27831881 27832270 + 2 NA intron (NM_002713, intron 1 of 5) intron (NM_002713, intron 1 of 5) 1293 NM_014110 5511 Hs.533474 NM_002713 ENSG00000117751 PPP1R8 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 protein phosphatase 1 regulatory subunit 8 protein-coding 164-82 chr3 193875181 193875303 + 2 NA Intergenic Intergenic -31233 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 290-211 chr2 77150062 77150292 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 164212 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 728-44 chr2 50315957 50316480 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 31536 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 392-361 chrX 78150107 78150411 + 2 NA Intergenic L1MA2|LINE|L1 -10609 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 265-120 chr15 60966007 60966259 + 2 NA intron (NM_134261, intron 1 of 10) MLT1B|LTR|ERVL-MaLR 263169 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 330-407 chr5 15344353 15344560 + 2 NA Intergenic MIRb|SINE|MIR -77896 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 561-41 chr11 122055216 122055577 + 2 NA intron (NR_137178, intron 3 of 4) intron (NR_137178, intron 3 of 4) 44448 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 291-361 chr5 99544702 99544852 + 2 NA intron (NR_110562, intron 2 of 3) L1PREC2|LINE|L1 10787 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 295-195 chr2 6986540 6986767 + 2 NA intron (NM_001349186, intron 2 of 7) intron (NM_001349186, intron 2 of 7) 53569 NR_146069 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4|hUIP4 ring finger protein 144A protein-coding 390-418 chr9 82233074 82233414 + 2 NA Intergenic L1M2|LINE|L1 244472 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 304-7 chr1 47257962 47258190 + 2 NA intron (NM_001282938, intron 18 of 18) L1ME4c|LINE|L1 -25741 NM_001290403 6886 Hs.705618 NM_003189 ENSG00000162367 TAL1 SCL|TCL5|bHLHa17|tal-1 TAL bHLH transcription factor 1, erythroid differentiation factor protein-coding 305-185 chr16 71762097 71762365 + 2 NA intron (NM_001128, intron 9 of 22) L1ME3G|LINE|L1 -3744 NR_003059 692111 NR_003059 ENSG00000223224 SNORD71 HBII-239|MIRN768|hsa-mir-768 small nucleolar RNA, C/D box 71 snoRNA 322-185 chr16 22759479 22759753 + 2 NA Intergenic L1M5|LINE|L1 -54546 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 372-215 chr2 22565715 22565994 + 2 NA Intergenic Intergenic 29375 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 402-243 chr4 112376833 112377132 + 2 NA intron (NM_001102406, intron 2 of 15) intron (NM_001102406, intron 2 of 15) 79613 NM_001102406 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 428-93 chr17 66602299 66602639 + 2 NA intron (NM_002737, intron 3 of 16) L1HS|LINE|L1 -184603 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 468-172 chr20 23192614 23193078 + 2 NA Intergenic L1ME4a|LINE|L1 -60210 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 252-41 chr10 52518139 52518387 + 2 NA Intergenic Intergenic -47730 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 324-495 chr7 55589024 55589192 + 2 NA Intergenic Intergenic -16606 NM_030796 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 244-235 chr3 115488582 115488747 + 2 NA Intergenic Intergenic -134846 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 724-94 chr7 68656592 68656967 + 2 NA Intergenic L1MB8|LINE|L1 636526 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 445-10 chr1 177193000 177193322 + 2 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 22203 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 339-587 chr8 121780369 121780570 + 2 NA Intergenic L1MC4a|LINE|L1 -139029 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 409-215 chr4 29013503 29013725 + 2 NA intron (NR_146499, intron 2 of 2) intron (NR_146499, intron 2 of 2) 16830 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 329-339 chr21 34646354 34646632 + 2 NA Intergenic MER20|DNA|hAT-Charlie -22501 NM_001317009 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 344-394 chr5 114033314 114033520 + 2 NA Intergenic L1ME3Cz|LINE|L1 -328653 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 207-152 chr2 156566996 156567128 + 2 NA intron (NM_000408, intron 9 of 16) L1MB3|LINE|L1 130683 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 162-115 chr6 146174343 146174496 + 2 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 145221 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 178-25 chr10 127729960 127730099 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -7156 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 632-29 chr15 33251431 33251971 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -4146 NR_046005 100652857 Hs.439998 NR_046005 TMCO5B - transmembrane and coiled-coil domains 5B (pseudogene) pseudo 191-101 chr2 100550594 100550720 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -12336 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 256-62 chr11 20812460 20812696 + 2 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 142992 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 380-55 chr10 117851063 117851356 + 2 NA Intergenic Intergenic -195612 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 230-92 chr12 103990250 103990456 + 2 NA intron (NM_031302, intron 11 of 11) MARNA|DNA|TcMar-Mariner 24481 NM_003211 6996 Hs.584809 NM_003211 ENSG00000139372 TDG hTDG thymine DNA glycosylase protein-coding 212-39 chr10 54340102 54340294 + 2 NA intron (NM_001354411, intron 6 of 34) (TTTCT)n|Simple_repeat|Simple_repeat -146032 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 617-141 chrX 47411224 47411687 + 2 NA intron (NM_003446, intron 3 of 3) AluJb|SINE|Alu 22805 NR_003710 100124540 Hs.693443 NR_003710 ENSG00000221459 SNORA11C - small nucleolar RNA, H/ACA box 11C snoRNA 222-65 chr11 69347694 69347847 + 2 NA Intergenic L1ME1|LINE|L1 53615 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 166-106 chr6 118915391 118915533 + 2 NA intron (NM_153255, intron 5 of 6) intron (NM_153255, intron 5 of 6) 16276 NM_017696 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 288-260 chr3 60297516 60297724 + 2 NA intron (NM_001320900, intron 6 of 9) L1MD1|LINE|L1 -216711 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 442-108 chr18 2523053 2523363 + 2 NA Intergenic L1MEc|LINE|L1 48297 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 359-130 chr13 64648862 64649211 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -573025 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 436-189 chr3 110480936 110481277 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 588853 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 421-54 chr12 83858771 83859087 + 2 NA Intergenic L1MA8|LINE|L1 1053870 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 400-310 chr6 103921462 103921765 + 2 NA Intergenic L1MCc|LINE|L1 937933 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 227-281 chr5 38531413 38531594 + 2 NA intron (NM_002310, intron 1 of 19) HAL1ME|LINE|L1 25143 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 350-261 chr2 226451531 226451772 + 2 NA Intergenic Intergenic 207142 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 470-250 chr7 34547656 34548037 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -110372 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 320-158 chr14 83658920 83659175 + 2 NA Intergenic Intergenic 1016415 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 289-51 chr10 31376724 31376918 + 2 NA intron (NM_001323638, intron 4 of 12) intron (NM_001323638, intron 4 of 12) 22934 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 480-148 chr2 79932014 79932389 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -65618 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 336-44 chr1 217949981 217950280 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 57230 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 305-147 chr14 44520206 44520481 + 2 NA intron (NR_135257, intron 2 of 2) L1M1|LINE|L1 12934 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 488-65 chr12 127842678 127843012 + 2 NA Intergenic Intergenic -38772 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 163-128 chr9 36403507 36403644 + 2 NA Intergenic Intergenic -2377 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 535-244 chr8 114995017 114995409 + 2 NA Intergenic L1M3|LINE|L1 672800 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 214-306 chr7 96984771 96984928 + 2 NA intron (NR_015448, intron 1 of 2) intron (NR_015448, intron 1 of 2) -20704 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 285-413 chr8 83223524 83223745 + 2 NA Intergenic Intergenic -180124 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 373-4 chr1 14409668 14410031 + 2 NA intron (NR_149058, intron 1 of 4) L1ME3Cz|LINE|L1 10124 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 227-62 chr11 45480967 45481118 + 2 NA Intergenic Intergenic 109645 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 359-356 chr4 44817544 44817848 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -91062 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 844-67 chr8 77524144 77524725 + 2 NA Intergenic L2a|LINE|L2 73737 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 433-4 chr1 75080600 75080976 + 2 NA Intergenic Intergenic -47646 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 312-508 chr8 43850166 43850409 + 2 NA Intergenic ALR/Alpha|Satellite|centr 557845 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 416-68 chr11 46112490 46112887 + 2 NA intron (NR_147890, intron 1 of 18) intron (NR_147890, intron 1 of 18) 8131 NM_001352028 51317 Hs.502458 NM_016621 ENSG00000135365 PHF21A BHC80|BM-006 PHD finger protein 21A protein-coding 242-397 chr8 100380923 100381114 + 2 NA Intergenic Intergenic -1745 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 279-395 chr7 51335930 51336069 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -19138 NM_001346444 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 284-210 chr2 133410149 133410361 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 144060 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 170-65 chr2 16344969 16345118 + 2 NA Intergenic L1MA4A|LINE|L1 294616 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 266-434 chr8 120713655 120713886 + 2 NA intron (NM_021021, intron 1 of 6) L1ME2|LINE|L1 -47483 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 466-72 chr13 71887943 71888289 + 2 NA Intergenic AluSx|SINE|Alu -20912 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 159-3 chr1 90904468 90904608 + 2 NA Intergenic Intergenic 52779 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 327-260 chr2 66704789 66705055 + 2 NA Intergenic L2c|LINE|L2 -1695 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 345-348 chr3 56036860 56037138 + 2 NA intron (NR_132749, intron 7 of 17) L1PA10|LINE|L1 -184405 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 506-138 chr2 56735642 56735989 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -550045 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 522-275 chrX 78145383 78145771 + 2 NA Intergenic L1MA2|LINE|L1 -5927 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 220-77 chr11 125801359 125801510 + 2 NA Intergenic L1MA8|LINE|L1 13307 NM_001129883 100169851 Hs.131278 NM_001129883 ENSG00000236027 PATE3 HEL-127|PATE-DJ prostate and testis expressed 3 protein-coding 290-58 chr10 82041099 82041331 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 163528 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 328-432 chr5 15238680 15238893 + 2 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 27774 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 739-60 chr5 180048156 180048843 + 2 NA intron (NM_001280801, intron 1 of 7) FRAM|SINE|Alu 23260 NM_001280801 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 344-177 chr16 63184961 63185190 + 2 NA Intergenic Intergenic -1148637 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 304-402 chr5 8033091 8033295 + 2 NA Intergenic Intergenic 164045 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 540-187 chr6 160193676 160194096 + 2 NA Intergenic L1MA5A|LINE|L1 64935 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 168-120 chr8 118973814 118973916 + 2 NA intron (NM_001324095, intron 1 of 7) L2a|LINE|L2 21602 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 342-358 chr4 58692057 58692314 + 2 NA Intergenic L1MB8|LINE|L1 -155857 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 198-93 chr17 76143650 76143757 + 2 NA 3' UTR (NM_001330501, exon 18 of 18) 3' UTR (NM_001330501, exon 18 of 18) -2458 NM_001454 2302 Hs.651204 NM_001454 ENSG00000129654 FOXJ1 FKHL13|HFH-4|HFH4 forkhead box J1 protein-coding 427-204 chr5 31315553 31315819 + 2 NA intron (NM_001362435, intron 8 of 10) MIRb|SINE|MIR 122000 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 260-225 chr2 193630243 193630454 + 2 NA Intergenic L1M1|LINE|L1 -713921 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 574-138 chr5 44185133 44185549 + 2 NA Intergenic Intergenic -203391 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 397-39 chr10 88373925 88374153 + 2 NA intron (NM_018363, intron 4 of 6) MIRb|SINE|MIR 209279 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 355-238 chr2 57056115 57056394 + 2 NA Intergenic L1MA2|LINE|L1 -851397 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 123-42 chr4 157570579 157570694 + 2 NA Intergenic Intergenic -1854 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 312-306 chr21 31691559 31691797 + 2 NA intron (NM_020706, intron 14 of 19) (A)n|Simple_repeat|Simple_repeat 32056 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 340-470 chr6 28254361 28254639 + 2 NA intron (NM_001304506, intron 1 of 4) MER66B|LTR|ERV1 -2231 NM_019110 387032 Hs.44720 NM_019110 ENSG00000187626 ZKSCAN4 P1P373C6|ZNF307|ZNF427|ZSCAN36 zinc finger with KRAB and SCAN domains 4 protein-coding 172-73 chr3 18839781 18839926 + 2 NA Intergenic Intergenic -308657 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 209-342 chr9 11099369 11099560 + 2 NA Intergenic MER39|LTR|ERV1 486258 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 448-101 chr19 33575563 33575912 + 2 NA Intergenic MER119|DNA|hAT-Charlie -46216 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 300-46 chr10 61572706 61572945 + 2 NA Intergenic MLT1-int|LTR|ERVL-MaLR -90104 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 400-332 chr8 35222833 35223173 + 2 NA Intergenic L1MEg|LINE|L1 -12472 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 330-190 chr16 54005691 54005939 + 2 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -33578 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 648-91 chr3 84667155 84667628 + 2 NA non-coding (NR_033860, exon 19 of 21) non-coding (NR_033860, exon 19 of 21) 202184 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 269-268 chr4 33564031 33564196 + 2 NA Intergenic LTR37B|LTR|ERV1 475780 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 329-445 chr5 15767609 15767886 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -152745 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 402-252 chr4 158313283 158313568 + 2 NA Intergenic L1PA16|LINE|L1 102939 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 454-54 chr11 58150703 58151118 + 2 NA intron (NM_001005212, intron 2 of 2) Tigger3b|DNA|TcMar-Tigger -31466 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 268-280 chr4 69845593 69845773 + 2 NA intron (NM_005420, intron 6 of 7) intron (NM_005420, intron 6 of 7) 14462 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 277-397 chr8 16360066 16360336 + 2 NA Intergenic L1PA14|LINE|L1 -167410 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 309-395 chr4 64428819 64429002 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -19450 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 235-183 chr2 146594108 146594239 + 2 NA Intergenic L1MEg|LINE|L1 7116 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 527-127 chr2 58645523 58645881 + 2 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 124949 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 425-190 chr3 118740040 118740341 + 2 NA intron (NR_135547, intron 1 of 3) MLT2D|LTR|ERVL 70643 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 243-274 chr3 22931615 22931771 + 2 NA Intergenic LTR82A|LTR|ERVL 270885 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 263-307 chr4 187654423 187654609 + 2 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) 18125 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 350-169 chr16 72215254 72215503 + 2 NA Intergenic L1ME4a|LINE|L1 -42928 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 359-486 chr8 124190315 124190580 + 2 NA Intergenic L2|LINE|L2 -18925 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 495-69 chr15 75404192 75404473 + 2 NA intron (NM_015477, intron 9 of 20) L1MC5a|LINE|L1 -35705 NM_001256496 4123 Hs.26232 NM_006715 ENSG00000140400 MAN2C1 MAN6A8|MANA|MANA1 mannosidase alpha class 2C member 1 protein-coding 405-15 chr1 178109681 178110014 + 2 NA intron (NM_170692, intron 1 of 17) AluJr4|SINE|Alu 15743 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 223-77 chr13 87300009 87300181 + 2 NA Intergenic Intergenic 318645 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 693-32 chr14 84517996 84518435 + 2 NA Intergenic L1MA3|LINE|L1 -753717 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 255-310 chr5 1759223 1759430 + 2 NA Intergenic AluSz6|SINE|Alu 40511 NM_032479 64979 Hs.719465 NM_032479 ENSG00000171421 MRPL36 BRIP1|L36mt|MRP-L36|PRPL36|RPMJ mitochondrial ribosomal protein L36 protein-coding 366-227 chr2 150066894 150067127 + 2 NA Intergenic L1MB7|LINE|L1 189997 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 831-27 chr21 27341199 27341848 + 2 NA Intergenic Intergenic -374435 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 234-334 chr6 10277883 10278093 + 2 NA Intergenic L1MD1|LINE|L1 -126514 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 274-398 chr8 122689939 122690107 + 2 NA intron (NR_126348, intron 2 of 3) intron (NR_126348, intron 2 of 3) 4083 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 337-90 chr11 55059802 55060096 + 2 NA Intergenic ALR/Alpha|Satellite|centr -202206 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 355-97 chr11 88261001 88261220 + 2 NA Intergenic L1PA14|LINE|L1 76626 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 247-408 chr8 95526790 95526951 + 2 NA intron (NR_038207, intron 2 of 2) L1MEd|LINE|L1 -257669 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 473-257 chr7 15394487 15394921 + 2 NA intron (NM_001004320, intron 5 of 12) intron (NM_001004320, intron 5 of 12) 167311 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 368-257 chr2 223449038 223449289 + 2 NA Intergenic Intergenic 153198 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 253-216 chr20 2044351 2044550 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -50165 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 358-446 chr7 79661449 79661638 + 2 NA Intergenic Intergenic 207583 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 254-50 chr10 120244284 120244425 + 2 NA Intergenic Intergenic 110869 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 374-59 chr11 102672246 102672461 + 2 NA Intergenic L1PA15|LINE|L1 33416 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 267-44 chr10 38523890 38524099 + 2 NA Intergenic Intergenic 95848 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 549-116 chr2 128991483 128991921 + 2 NA Intergenic L1MD1|LINE|L1 127102 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 324-582 chrX 88300386 88300626 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -446719 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 497-169 chr3 19310714 19311083 + 2 NA intron (NM_144633, intron 3 of 15) intron (NM_144633, intron 3 of 15) 4033 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 380-216 chr20 33879583 33879865 + 2 NA Intergenic AluJo|SINE|Alu 68376 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 693-19 chr12 2645476 2645988 + 2 NA intron (NM_001129836, intron 31 of 46) intron (NM_001129836, intron 31 of 46) 26488 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 350-330 chr3 178588936 178589208 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 30222 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 255-203 chr2 84048784 84048985 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -241798 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 192-222 chr9 104102100 104102219 + 2 NA exon (NM_001042551, exon 8 of 25) exon (NM_001042551, exon 8 of 25) 7532 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 253-421 chr8 131061632 131061822 + 2 NA Intergenic Intergenic -20818 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 466-146 chr2 154183893 154184245 + 2 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 239675 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 185-86 chr18 75570339 75570477 + 2 NA Intergenic AluSx|SINE|Alu 141995 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 214-19 chr1 106709135 106709314 + 2 NA Intergenic L1PA16|LINE|L1 -109015 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 324-138 chr13 61740493 61740687 + 2 NA Intergenic L2c|LINE|L2 288958 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 125-69 chr8 101482177 101482245 + 2 NA Intergenic HAL1|LINE|L1 -10228 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 224-30 chr10 30890303 30890491 + 2 NA intron (NM_001143766, intron 5 of 7) intron (NM_001143766, intron 5 of 7) 109120 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 216-58 chr11 43609927 43610136 + 2 NA Intergenic Intergenic 28637 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 285-3 chr1 48649747 48649904 + 2 NA intron (NM_001323575, intron 8 of 12) MIRb|SINE|MIR 127066 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 329-473 chr5 128484680 128484938 + 2 NA intron (NM_001999, intron 5 of 64) MIR|SINE|MIR 53436 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 370-327 chr4 18527793 18528062 + 2 NA Intergenic Intergenic -506052 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 485-312 chr9 90665608 90666077 + 2 NA Intergenic L1PA13|LINE|L1 -23018 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 251-235 chr3 77613675 77613874 + 2 NA intron (NM_001290039, intron 22 of 26) intron (NM_001290039, intron 22 of 26) 435189 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 225-114 chr16 61047364 61047502 + 2 NA Intergenic Intergenic 8333 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 266-57 chr11 21796135 21796354 + 2 NA Intergenic L1MA8|LINE|L1 -396841 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 580-52 chr15 45246818 45247208 + 2 NA Intergenic Intergenic -5221 NM_004212 9153 Hs.367833 NM_004212 ENSG00000137860 SLC28A2 CNT2|HCNT2|HsT17153|SPNT1 solute carrier family 28 member 2 protein-coding 235-77 chr12 16376728 16376939 + 2 NA 3' UTR (NM_001267598, exon 4 of 4) 3' UTR (NM_001267598, exon 4 of 4) 23416 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 439-13 chr1 113508732 113508963 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 118332 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 369-338 chr5 131447607 131447834 + 2 NA intron (NM_016340, intron 21 of 27) intron (NM_016340, intron 21 of 27) 183711 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 204-260 chr6 163652291 163652429 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 19124 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 434-198 chr3 180220761 180221089 + 2 NA Intergenic L1M3|LINE|L1 -183988 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 343-314 chr21 30905816 30906032 + 2 NA Intergenic AluYj4|SINE|Alu -24344 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 335-292 chr20 23511285 23511556 + 2 NA Intergenic Intergenic -7726 NR_001279 164380 Hs.400007 NR_001279 ENSG00000204663 CST13P CSTT|CTES6 cystatin 13, pseudogene pseudo 327-390 chr5 35207559 35207799 + 2 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 22808 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 647-77 chr5 6145924 6146470 + 2 NA Intergenic MIRb|SINE|MIR 191095 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 232-263 chr4 35705177 35705381 + 2 NA Intergenic Intergenic 538660 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 503-174 chr20 50170407 50170895 + 2 NA Intergenic AluSz6|SINE|Alu -1919 NR_109943 101927541 Hs.570391 NR_109943 ENSG00000231742 LINC01273 - long intergenic non-protein coding RNA 1273 ncRNA 295-327 chr4 38646300 38646484 + 2 NA intron (NR_026804, intron 1 of 7) AluJo|SINE|Alu -17807 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 317-100 chr12 3161781 3162005 + 2 NA intron (NM_006675, intron 2 of 8) FRAM|SINE|Alu 84514 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 260-103 chr12 44216945 44217089 + 2 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 380936 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 634-93 chr21 23938761 23939247 + 2 NA Intergenic MER4CL34|LTR|ERV1 382373 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 429-150 chr2 63132830 63133155 + 2 NA intron (NR_148704, intron 18 of 18) L1MB3|LINE|L1 -13450 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 144-53 chr22 24756279 24756367 + 2 NA intron (NM_001008496, intron 5 of 20) intron (NM_001008496, intron 5 of 20) -8178 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 529-123 chr2 212441989 212442355 + 2 NA intron (NM_001042599, intron 1 of 26) HERVL-int|LTR|ERVL -15812 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 294-131 chr15 23967020 23967204 + 2 NA Intergenic L1MC3|LINE|L1 -8035 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 359-31 chr1 175798986 175799247 + 2 NA Intergenic L1MA9|LINE|L1 -55521 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 304-8 chr1 60428657 60428845 + 2 NA Intergenic Intergenic 193934 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 502-39 chr10 111726385 111726810 + 2 NA Intergenic Intergenic 457168 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 296-399 chr6 54223710 54223957 + 2 NA intron (NM_138569, intron 10 of 12) intron (NM_138569, intron 10 of 12) -84608 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 199-133 chr2 223759989 223760137 + 2 NA intron (NR_110905, intron 5 of 5) intron (NR_110905, intron 5 of 5) 77519 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 348-181 chr17 13439046 13439388 + 2 NA Intergenic MER31B|LTR|ERV1 104429 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 548-97 chr18 21037251 21037712 + 2 NA intron (NM_005406, intron 9 of 32) intron (NM_005406, intron 9 of 32) 74332 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 583-145 chr6 9450008 9450419 + 2 NA Intergenic L1MC4a|LINE|L1 798004 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 248-155 chr17 76602930 76603107 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -17158 NM_006456 10610 Hs.592105 NM_006456 ENSG00000070731 ST6GALNAC2 SAITL1|SIAT7|SIAT7B|SIATL1|ST6GalNAII|STHM ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 protein-coding 460-240 chr5 76915667 76916049 + 2 NA intron (NM_130772, intron 4 of 4) L1MD|LINE|L1 -37187 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 245-367 chr9 35003165 35003315 + 2 NA Intergenic L1M4|LINE|L1 12950 NM_001135005 25822 Hs.237506 NM_012266 ENSG00000137094 DNAJB5 Hsc40 DnaJ heat shock protein family (Hsp40) member B5 protein-coding 267-89 chr12 69723800 69724016 + 2 NA intron (NR_159971, intron 2 of 2) intron (NR_159971, intron 2 of 2) 14642 NR_159971 101928002 Hs.569096 NR_110072 LOC101928002 - uncharacterized LOC101928002 ncRNA 330-266 chr2 71863641 71863936 + 2 NA Intergenic Intergenic 284074 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 332-445 chr5 178555989 178556243 + 2 NA intron (NM_173465, intron 2 of 28) L1ME4b|LINE|L1 34277 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 361-187 chr18 48498225 48498504 + 2 NA Intergenic L1MCa|LINE|L1 -40667 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 139-67 chr5 4506689 4506807 + 2 NA Intergenic L1MD|LINE|L1 -266733 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 443-167 chr2 223393933 223394336 + 2 NA Intergenic L1MC3|LINE|L1 208227 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 348-190 chr17 73779715 73779978 + 2 NA intron (NR_027146, intron 2 of 3) intron (NR_027146, intron 2 of 3) -6976 NR_040020 400620 Hs.348644 NR_040020 ENSG00000234721 LINC02092 - long intergenic non-protein coding RNA 2092 ncRNA 409-304 chr8 138317982 138318247 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 179147 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 238-38 chr10 51354550 51354723 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 55063 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 334-181 chr15 93414454 93414715 + 2 NA Intergenic LTR1A1|LTR|ERV1 208518 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 653-108 chr6 134708527 134709052 + 2 NA Intergenic Intergenic -168784 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 548-218 chr7 113178704 113179153 + 2 NA Intergenic L1M6|LINE|L1 -60346 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 256-289 chr4 63519408 63519598 + 2 NA Intergenic L1MCa|LINE|L1 889947 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 213-121 chr18 6868020 6868152 + 2 NA intron (NM_001010000, intron 4 of 16) intron (NM_001010000, intron 4 of 16) 33601 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 256-304 chr5 4157617 4157821 + 2 NA Intergenic L1MCc|LINE|L1 561887 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 161-100 chr7 1329779 1329883 + 2 NA Intergenic Intergenic 96959 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 241-159 chr18 69185468 69185645 + 2 NA Intergenic Intergenic -215332 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 261-278 chr4 56832698 56832908 + 2 NA Intergenic L1MD2|LINE|L1 -10934 NM_021114 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 351-278 chr21 41301441 41301725 + 2 NA Intergenic Intergenic -15218 NM_206964 54097 Hs.473877 NM_058186 ENSG00000183844 FAM3B 2-21|C21orf11|C21orf76|ORF9|PANDER|PRED44 family with sequence similarity 3 member B protein-coding 304-349 chr3 109014232 109014509 + 2 NA intron (NM_014429, intron 17 of 27) intron (NM_014429, intron 17 of 27) -60491 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 399-197 chr22 43543301 43543647 + 2 NA intron (NM_198856, intron 25 of 29) L1MEd|LINE|L1 27220 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 315-266 chr2 207030039 207030325 + 2 NA Intergenic AluSc|SINE|Alu 79891 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 333-531 chr7 21379435 21379651 + 2 NA Intergenic L1MEc|LINE|L1 -48540 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 275-54 chr10 131942666 131942874 + 2 NA intron (NR_033191, intron 6 of 9) intron (NR_033191, intron 6 of 9) 39243 NM_004052 664 Hs.144873 NM_004052 ENSG00000176171 BNIP3 NIP3 BCL2 interacting protein 3 protein-coding 444-117 chr2 56928524 56928870 + 2 NA Intergenic LTR16E2|LTR|ERVL -742927 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 247-341 chr5 144456901 144457086 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 251602 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 631-32 chr13 44208979 44209449 + 2 NA Intergenic Intergenic -13014 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 303-444 chr8 35964478 35964688 + 2 NA Intergenic L1MEg|LINE|L1 -254263 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 346-220 chr19 53619956 53620272 + 2 NA Intergenic AluYf1|SINE|Alu -11942 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 274-261 chr3 70645950 70646215 + 2 NA Intergenic LTR33|LTR|ERVL -333444 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 248-330 chr5 148216865 148217097 + 2 NA Intergenic Intergenic 13939 NM_205841 404203 Hs.334274 NM_205841 ENSG00000178172 SPINK6 BUSI2|UNQ844 serine peptidase inhibitor, Kazal type 6 protein-coding 331-496 chr7 52442371 52442606 + 2 NA Intergenic L1MC2|LINE|L1 -593145 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 197-32 chr10 121260553 121260691 + 2 NA Intergenic Intergenic 270692 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 229-254 chr3 100235606 100235756 + 2 NA Intergenic Intergenic -25311 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 384-315 chr6 65027307 65027631 + 2 NA intron (NM_001292009, intron 13 of 43) L1MD3|LINE|L1 -273949 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 542-158 chr5 5578380 5578762 + 2 NA Intergenic L1ME4a|LINE|L1 155894 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 405-41 chr10 120060223 120060565 + 2 NA Intergenic Intergenic 101881 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 312-105 chr12 46485688 46485875 + 2 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 101674 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 324-479 chr7 4457652 4457821 + 2 NA Intergenic AluSx1|SINE|Alu -224559 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 440-131 chr2 161362008 161362349 + 2 NA intron (NM_005805, intron 3 of 11) AluJb|SINE|Alu 53753 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 166-119 chr8 118388114 118388251 + 2 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -232819 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 298-75 chr11 79176536 79176732 + 2 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 225475 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 230-274 chr4 129521190 129521386 + 2 NA Intergenic Intergenic 250190 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 411-135 chr2 6455421 6455705 + 2 NA Intergenic AluSx|SINE|Alu -80141 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 176-32 chr15 50861994 50862121 + 2 NA Intergenic L2a|LINE|L2 -46626 NM_001252127 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 subunit epsilon 1 protein-coding 124-6 chr10 36633301 36633384 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -492515 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 403-51 chr11 60564260 60564587 + 2 NA Intergenic LTR12|LTR|ERV1 49031 NM_001278320 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 292-129 chr13 114304589 114304765 + 2 NA intron (NM_080687, intron 8 of 8) intron (NM_080687, intron 8 of 8) -9826 NM_032436 283489 Hs.7542 NM_032436 ENSG00000198824 CHAMP1 C13orf8|CAMP|CHAMP|MRD40|ZNF828 chromosome alignment maintaining phosphoprotein 1 protein-coding 164-33 chr13 59597991 59598076 + 2 NA Intergenic L1MDa|LINE|L1 -414685 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 209-316 chr8 78986070 78986233 + 2 NA Intergenic L1MA8|LINE|L1 148622 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 317-55 chr10 70991862 70992094 + 2 NA Intergenic AluSz6|SINE|Alu 52925 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 229-298 chr5 44704516 44704682 + 2 NA Intergenic L1MEf|LINE|L1 104194 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 346-508 chr8 135119478 135119719 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -114533 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 181-162 chr8 102369294 102369456 + 2 NA intron (NM_001282873, intron 1 of 58) Charlie1a|DNA|hAT-Charlie 43314 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 774-8 chr10 81809937 81810553 + 2 NA Intergenic L1MC1|LINE|L1 -64949 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 162-49 chr18 66911446 66911573 + 2 NA Intergenic L1MA8|LINE|L1 -170075 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 299-340 chr4 152919535 152919685 + 2 NA Intergenic Intergenic -16713 NM_001371116 219-272 chr5 4183448 4183616 + 2 NA Intergenic Intergenic 587700 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 366-38 chr10 9643597 9643937 + 2 NA Intergenic L1MCc|LINE|L1 -348174 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 220-143 chr19 10291876 10292032 + 2 NA intron (NM_003259, intron 3 of 10) CpG-13669 2002 NM_003259 7087 Hs.465862 NM_003259 ENSG00000105376 ICAM5 TLCN|TLN intercellular adhesion molecule 5 protein-coding 359-58 chr10 56691984 56692195 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -330816 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 353-383 chr4 99211104 99211394 + 2 NA intron (NR_132990, intron 2 of 6) intron (NR_132990, intron 2 of 6) 7997 NM_000672 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 225-62 chr11 84678931 84679137 + 2 NA intron (NM_001351274, intron 5 of 26) Tigger16a|DNA|TcMar-Tigger 41908 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 305-460 chr6 994035 994299 + 2 NA intron (NR_027116, intron 2 of 3) (TATG)n|Simple_repeat|Simple_repeat 107165 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 329-619 chrX 57006302 57006604 + 2 NA Intergenic L1M2|LINE|L1 -10912 NM_001010862 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 344-241 chr2 80266969 80267182 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 37677 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 166-118 chr8 117467921 117468055 + 2 NA Intergenic Intergenic -52725 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 508-203 chr6 40338979 40339450 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 16792 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 379-128 chr18 21433873 21434176 + 2 NA intron (NM_001142966, intron 7 of 32) intron (NM_001142966, intron 7 of 32) 166680 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 474-83 chr14 66288055 66288357 + 2 NA Intergenic Intergenic -198165 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 374-402 chr8 132417435 132417763 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 29663 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 452-80 chr14 63589265 63589685 + 2 NA Intergenic AluSx3|SINE|Alu -46080 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 507-68 chr12 114508749 114509101 + 2 NA Intergenic Intergenic -100483 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 392-172 chr20 9758750 9758993 + 2 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 80205 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 385-311 chr5 159720489 159720776 + 2 NA Intergenic AluSx1|SINE|Alu 150752 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 238-402 chr8 136356145 136356290 + 2 NA Intergenic L1MEc|LINE|L1 -174581 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 548-51 chr12 33779302 33779646 + 2 NA Intergenic Intergenic -243022 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 791-18 chr13 39587775 39588342 + 2 NA intron (NM_005780, intron 2 of 3) LTR33A|LTR|ERVL 15135 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 439-298 chr9 4403342 4403690 + 2 NA Intergenic L1MA2|LINE|L1 -86952 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 547-44 chr11 124444147 124444628 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -3302 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 337-452 chr5 73358622 73358840 + 2 NA Intergenic LTR16C|LTR|ERVL 20825 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 442-216 chr4 107812471 107812863 + 2 NA Intergenic Intergenic -11898 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 340-435 chr5 30547385 30547681 + 2 NA Intergenic L1ME3A|LINE|L1 -646153 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 328-238 chr19 51995953 51996207 + 2 NA intron (NM_198480, intron 5 of 5) L2a|LINE|L2 -9240 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 572-87 chr2 74985570 74986019 + 2 NA Intergenic L1ME4b|LINE|L1 27151 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 400-361 chr9 16895572 16895865 + 2 NA Intergenic Intergenic -25048 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 333-303 chr20 18896144 18896361 + 2 NA Intergenic L1MC1|LINE|L1 -66049 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 355-240 chr2 64450390 64450631 + 2 NA Intergenic Intergenic -3652 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 588-55 chr17 70997611 70998120 + 2 NA Intergenic Intergenic 204314 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 501-89 chr19 445191 445564 + 2 NA intron (NM_012435, intron 1 of 12) MLT1A0|LTR|ERVL-MaLR 15619 NM_012435 25759 Hs.30965 NM_012435 ENSG00000129946 SHC2 SCK|SHCB|SLI SHC adaptor protein 2 protein-coding 379-19 chr1 158975085 158975399 + 2 NA intron (NM_198928, intron 8 of 8) intron (NM_198928, intron 8 of 8) -24734 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 335-81 chr11 4757115 4757379 + 2 NA Intergenic L1MB7|LINE|L1 12691 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 408-75 chr12 17188574 17188831 + 2 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 199955 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 344-41 chr10 10793219 10793421 + 2 NA intron (NR_027082, intron 1 of 3) intron (NR_027082, intron 1 of 3) 1594 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 138-43 chr2 122941608 122941691 + 2 NA Intergenic L1MB5|LINE|L1 131832 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 122-50 chr7 52899705 52899768 + 2 NA Intergenic Intergenic -135897 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 384-359 chr8 3625342 3625647 + 2 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -897043 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 363-325 chr4 58645009 58645261 + 2 NA Intergenic Intergenic -108807 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 315-19 chr1 98481731 98481984 + 2 NA Intergenic Intergenic -179864 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 440-201 chr5 89260819 89261174 + 2 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -356891 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 218-161 chr2 105256062 105256218 + 2 NA intron (NM_001328646, intron 11 of 11) intron (NM_001328646, intron 11 of 11) 14397 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 262-285 chr3 104230948 104231177 + 2 NA Intergenic Intergenic -706946 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 182-130 chr4 175504862 175504980 + 2 NA Intergenic Intergenic 282755 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 221-152 chr2 148805200 148805375 + 2 NA Intergenic AluSz|SINE|Alu -69940 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 563-54 chr14 78732612 78733162 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 329168 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 421-78 chr14 48770447 48770794 + 2 NA Intergenic Intergenic 815760 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 305-364 chr3 180957086 180957283 + 2 NA intron (NM_005087, intron 9 of 16) intron (NM_005087, intron 9 of 16) 32334 NM_001190233 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 136-36 chr16 80212299 80212402 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -328384 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 316-64 chr10 37870156 37870323 + 2 NA Intergenic L1MB5|LINE|L1 -12136 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 485-108 chr17 65470858 65471194 + 2 NA Intergenic Intergenic 13485 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 356-144 chr14 47397434 47397623 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -54282 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 429-67 chr12 31480459 31480700 + 2 NA intron (NM_144973, intron 2 of 20) MIR3|SINE|MIR -109344 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 419-149 chr2 118254379 118254749 + 2 NA Intergenic Intergenic -68178 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 561-4 chr1 77234841 77235369 + 2 NA Intergenic L1MC1|LINE|L1 -15675 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 369-82 chr12 41683206 41683532 + 2 NA Intergenic Intergenic -80820 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 277-239 chr21 30042986 30043146 + 2 NA Intergenic L1M4|LINE|L1 -103014 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 189-215 chr8 126514086 126514235 + 2 NA Intergenic MIRb|SINE|MIR 44318 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 239-393 chr8 24644432 24644607 + 2 NA Intergenic L3|LINE|CR1 -95901 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 313-505 chr7 75807124 75807287 + 2 NA Intergenic Intergenic 6601 NM_002991 6369 Hs.247838 NM_002991 ENSG00000106178 CCL24 Ckb-6|MPIF-2|MPIF2|SCYA24 C-C motif chemokine ligand 24 protein-coding 383-228 chr21 15268117 15268457 + 2 NA Intergenic Intergenic -203287 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 322-149 chr14 33814051 33814331 + 2 NA Intergenic L2c|LINE|L2 105254 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 287-302 chr5 15886083 15886290 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -48996 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 354-491 chr9 28097959 28098193 + 2 NA intron (NM_152570, intron 5 of 6) AluSz|SINE|Alu -524210 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 301-109 chr14 25264367 25264584 + 2 NA Intergenic L1PB2|LINE|L1 -214178 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 267-112 chr14 70492160 70492330 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -8489 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 248-445 chrX 98918712 98918887 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -1354264 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 393-262 chr5 8231707 8231997 + 2 NA Intergenic Intergenic 225712 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 212-280 chr6 54869532 54869688 + 2 NA intron (NM_001010872, intron 1 of 4) L2c|LINE|L2 22839 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 323-369 chr4 58707297 58707543 + 2 NA Intergenic Intergenic -171092 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 162-65 chr2 192250340 192250435 + 2 NA Intergenic L2a|LINE|L2 -55454 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 548-251 chr9 96818339 96818736 + 2 NA exon (NM_001346991, exon 5 of 5) exon (NM_001346991, exon 5 of 5) 35977 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 121-34 chr22 24907354 24907449 + 2 NA intron (NM_001098498, intron 20 of 23) L1MB7|LINE|L1 39294 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 325-438 chr5 42162412 42162679 + 2 NA intron (NR_104636, intron 1 of 3) L1MA4A|LINE|L1 12800 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 562-233 chrX 84675122 84675679 + 2 NA Intergenic L1MA3|LINE|L1 -172947 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 296-152 chr15 26506034 26506290 + 2 NA Intergenic Intergenic 122928 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 217-207 chr20 54045335 54045491 + 2 NA intron (NM_001366297, intron 3 of 8) intron (NM_001366297, intron 3 of 8) 13607 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 646-63 chr2 139554046 139554525 + 2 NA Intergenic L1MA7|LINE|L1 656961 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 517-278 chr8 128336484 128336883 + 2 NA Intergenic L1MB3|LINE|L1 186567 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 418-264 chr7 55360115 55360466 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -5158 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 723-66 chr6 113871328 113871877 + 2 NA intron (NR_038863, intron 1 of 2) intron (NR_038863, intron 1 of 2) 1745 NR_038863 285758 Hs.359399 NR_038863 ENSG00000227502 LINC01268 ROCKI long intergenic non-protein coding RNA 1268 ncRNA 478-247 chr6 40446344 40446686 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 68178 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 123-34 chr4 25187723 25187793 + 2 NA intron (NR_037934, intron 1 of 1) BLACKJACK|DNA|hAT-Blackjack 27086 NR_037934 285540 Hs.732278 NR_037934 SEPSECS-AS1 - SEPSECS antisense RNA 1 (head to head) ncRNA 237-36 chr10 82541089 82541263 + 2 NA intron (NR_163253, intron 3 of 10) MLT1B|LTR|ERVL-MaLR -308256 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 342-538 chr8 132227652 132227871 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -122496 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 320-336 chr3 26776710 26776925 + 2 NA Intergenic L1PB4|LINE|L1 82260 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 429-291 chr8 39887561 39887825 + 2 NA Intergenic L1MEc|LINE|L1 -26198 NM_002164 3620 Hs.840 NM_002164 ENSG00000131203 IDO1 IDO|IDO-1|INDO indoleamine 2,3-dioxygenase 1 protein-coding 303-299 chr3 176436872 176437133 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -78101 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 300-426 chr7 46179115 46179357 + 2 NA Intergenic Intergenic -257964 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 283-61 chr10 81612380 81612583 + 2 NA Intergenic L1ME1|LINE|L1 -262713 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 273-267 chr21 22311373 22311622 + 2 NA Intergenic Intergenic 212880 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 280-208 chr2 126419985 126420196 + 2 NA Intergenic L1MA9|LINE|L1 -235845 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 315-18 chr1 97834936 97835218 + 2 NA intron (NM_000110, intron 2 of 22) intron (NM_000110, intron 2 of 22) 38156 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 245-3 chr1 78821188 78821391 + 2 NA Intergenic Intergenic 171458 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 301-98 chr12 81021421 81021655 + 2 NA Intergenic Intergenic -56541 NM_001330242 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 225-3 chr1 60563883 60564066 + 2 NA intron (NR_146508, intron 4 of 7) MIRb|SINE|MIR 58711 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 341-285 chr20 11951203 11951450 + 2 NA Intergenic L2a|LINE|L2 33433 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 214-22 chr1 166285159 166285349 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -118499 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 427-10 chr1 143207564 143207800 + 2 NA Intergenic Intergenic 214910 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 213-73 chr12 75897576 75897729 + 2 NA Intergenic Intergenic 134124 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 127-29 chr14 63320926 63321035 + 2 NA Intergenic Intergenic -2045 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 659-101 chr7 34559577 34560037 + 2 NA intron (NR_033665, intron 2 of 3) L1ME2|LINE|L1 -98411 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 719-28 chr14 61345146 61345694 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 23977 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 346-498 chr8 124931849 124932127 + 2 NA Intergenic MIR|SINE|MIR -10020 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 205-253 chr6 168426175 168426360 + 2 NA Intergenic Intergenic -14917 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 265-58 chr11 32086024 32086192 + 2 NA Intergenic Intergenic -4966 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 308-463 chr7 50924767 50925065 + 2 NA Intergenic L1MEd|LINE|L1 -131463 NM_001371008 246-57 chr10 106289840 106290025 + 2 NA Intergenic L1MC5|LINE|L1 149767 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 251-92 chr14 51862838 51863035 + 2 NA intron (NM_001243774, intron 1 of 2) intron (NM_001243774, intron 1 of 2) 2324 NM_053064 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 291-238 chr2 172861537 172861814 + 2 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) 1637 NM_001282899 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 472-14 chr1 90225762 90226079 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 230810 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 247-407 chr8 90842691 90842911 + 2 NA intron (NM_022351, intron 3 of 12) intron (NM_022351, intron 3 of 12) 51026 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 543-54 chr11 120649566 120650084 + 2 NA intron (NM_001282470, intron 1 of 19) intron (NM_001282470, intron 1 of 19) 85389 NM_001282470 2900 Hs.538738 NM_014619 ENSG00000149403 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate ionotropic receptor kainate type subunit 4 protein-coding 308-60 chr10 56558118 56558313 + 2 NA Intergenic L1PA8|LINE|L1 -196942 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 236-339 chr7 122867931 122868114 + 2 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) 18438 NM_001363398 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 318-269 chr2 76046555 76046759 + 2 NA Intergenic L1M1|LINE|L1 -335742 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 182-124 chr4 110453677 110453833 + 2 NA Intergenic Intergenic -22400 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 387-128 chr16 25760193 25760551 + 2 NA intron (NM_006040, intron 1 of 1) MLT1B|LTR|ERVL-MaLR 68413 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 227-53 chr10 114688019 114688228 + 2 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -3120 NM_001322882 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 518-92 chr15 81047316 81047807 + 2 NA Intergenic Intergenic 46638 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 357-373 chr5 178875897 178876122 + 2 NA intron (NM_058230, intron 4 of 4) L1PREC2|LINE|L1 16056 NM_058230 117608 Hs.724051 NM_058230 ENSG00000178338 ZNF354B KID2 zinc finger protein 354B protein-coding 339-447 chr5 66749930 66750170 + 2 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) -78723 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 266-416 chr8 79287804 79287961 + 2 NA Intergenic MER50-int|LTR|ERV1 -44306 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 258-344 chr6 64883726 64883953 + 2 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -417579 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 391-212 chr20 53318159 53318469 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 133031 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 202-18 chr1 217055674 217055845 + 2 NA intron (NM_001243509, intron 1 of 8) intron (NM_001243509, intron 1 of 8) 21233 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 226-347 chr8 90282140 90282312 + 2 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 60738 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 590-57 chr15 55827075 55827461 + 2 NA non-coding (NR_104302, exon 21 of 21) non-coding (NR_104302, exon 21 of 21) -84116 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 229-36 chr10 70881978 70882165 + 2 NA TTS (NM_001323004) TTS (NM_001323004) 5810 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 355-162 chr14 97229509 97229846 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 74820 NR_146554 105370648 NR_146554 ENSG00000259110 LINC02304 - long intergenic non-protein coding RNA 2304 ncRNA 411-277 chr7 106328000 106328263 + 2 NA Intergenic Intergenic -43148 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 513-171 chr22 33181974 33182357 + 2 NA Intergenic Intergenic 73636 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 307-264 chr2 213471974 213472204 + 2 NA intron (NR_047660, intron 8 of 14) HERVL-int|LTR|ERVL 187625 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 380-15 chr1 96917256 96917528 + 2 NA Intergenic L1MA7|LINE|L1 -178531 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 305-519 chr8 20195452 20195737 + 2 NA Intergenic Intergenic -1787 NM_001693 526 Hs.295917 NM_001693 ENSG00000147416 ATP6V1B2 ATP6B1B2|ATP6B2|DOOD|HO57|VATB|VPP3|Vma2|ZLS2 ATPase H+ transporting V1 subunit B2 protein-coding 167-38 chr15 58539105 58539238 + 2 NA intron (NM_000236, intron 2 of 8) MLT1J|LTR|ERVL-MaLR -40436 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 612-114 chr5 83260038 83260498 + 2 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) 182721 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 397-98 chr14 76621766 76622114 + 2 NA Intergenic Intergenic -139528 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 247-411 chr8 104008079 104008237 + 2 NA intron (NM_001348500, intron 15 of 20) intron (NM_001348500, intron 15 of 20) 188938 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 305-257 chr2 70014830 70015096 + 2 NA intron (NR_033872, intron 7 of 10) L1MB3|LINE|L1 -52698 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 238-267 chr4 59668148 59668344 + 2 NA Intergenic Intergenic 654673 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 331-173 chr15 61464019 61464206 + 2 NA Intergenic Intergenic -234810 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 353-217 chr18 74067064 74067301 + 2 NA Intergenic L1MC4|LINE|L1 80652 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 298-92 chr12 23070379 23070587 + 2 NA Intergenic L1ME2|LINE|L1 -105153 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 531-161 chr3 110503686 110504167 + 2 NA Intergenic Intergenic 566033 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 662-24 chr14 54084106 54084702 + 2 NA Intergenic Intergenic -127513 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 721 chr1 9938309 9938800 + 2 NA intron (NM_001316974, intron 2 of 7) intron (NM_001316974, intron 2 of 7) -4369 NM_001297778 64802 Hs.633762 NM_022787 ENSG00000173614 NMNAT1 LCA9|NMNAT|PNAT1 nicotinamide nucleotide adenylyltransferase 1 protein-coding 444-165 chr3 191162877 191163178 + 2 NA Intergenic Intergenic -36214 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 369-291 chr4 47729414 47729692 + 2 NA intron (NM_006587, intron 5 of 21) L2|LINE|L2 76884 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 216-114 chr15 73154807 73154954 + 2 NA intron (NM_002499, intron 5 of 28) L1M2|LINE|L1 102396 NM_001172623 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 332-581 chrX 24303691 24303974 + 2 NA Intergenic LTR40a|LTR|ERVL 9561 NM_001136233 170067 Hs.716893 NM_001136233 SUPT20HL2 FAM48B1|FAM48B2 SUPT20H like 2 protein-coding 328-519 chr6 156374821 156375079 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -3800 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 447-79 chr14 87200306 87200578 + 2 NA Intergenic MER20|DNA|hAT-Charlie 294664 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 340-379 chr3 164926735 164927054 + 2 NA Intergenic L1PA13|LINE|L1 -95414 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 684-124 chr8 129812843 129813288 + 2 NA Intergenic L1PA16|LINE|L1 -26441 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 325-195 chr16 46388901 46389112 + 2 NA Intergenic Intergenic 180091 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 260-350 chr5 57750841 57751010 + 2 NA Intergenic LTR1A2|LTR|ERV1 100265 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 494-28 chr10 81593560 81593884 + 2 NA Intergenic L1P3|LINE|L1 -281472 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 225-79 chr12 127657101 127657272 + 2 NA Intergenic Intergenic -1598 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 327-241 chr2 21619812 21620055 + 2 NA Intergenic Intergenic 90719 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 183-106 chr4 74166298 74166473 + 2 NA intron (NM_001351310, intron 3 of 8) MLT1C|LTR|ERVL-MaLR 8267 NR_147097 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 404-330 chr8 125774083 125774399 + 2 NA Intergenic Intergenic 176956 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 296-113 chr12 108086772 108086969 + 2 NA Intergenic Intergenic -42418 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 325-54 chr10 29675689 29676000 + 2 NA intron (NM_001323599, intron 2 of 38) LOR1a|LTR|ERV1 -40873 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 268-318 chr5 97157080 97157265 + 2 NA Intergenic L1MA3|LINE|L1 -14561 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 415-4 chr1 59273428 59273831 + 2 NA Intergenic L1PB3|LINE|L1 -23184 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 325-13 chr1 87620601 87620882 + 2 NA Intergenic L1ME3|LINE|L1 -249086 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 513-122 chr2 11494894 11495293 + 2 NA Intergenic Intergenic -28916 NM_001278277 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 561-75 chr15 100969525 100970010 + 2 NA intron (NM_024652, intron 2 of 33) L1PA11|LINE|L1 50410 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 721-35 chr2 41759514 41759990 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -117803 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 522-120 chr19 34762935 34763292 + 2 NA intron (NM_001007248, intron 3 of 3) L1ME3F|LINE|L1 10102 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 335-556 chr8 142028528 142028705 + 2 NA Intergenic L1MEc|LINE|L1 -147723 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 256-322 chr5 65704439 65704605 + 2 NA intron (NM_019072, intron 4 of 10) intron (NM_019072, intron 4 of 10) 17587 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 188-153 chr4 55326905 55327018 + 2 NA Intergenic L1MEd|LINE|L1 -19281 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 608-10 chr10 51788411 51788840 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -89030 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 427-224 chr6 71762546 71762964 + 2 NA Intergenic L2c|LINE|L2 -123948 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 291-425 chr8 5011277 5011447 + 2 NA Intergenic MIRb|SINE|MIR -16448 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 398-91 chr13 93526941 93527204 + 2 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 300265 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 346-306 chr3 26075337 26075636 + 2 NA Intergenic Intergenic -201791 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 786-42 chr3 75148806 75149507 + 2 NA Intergenic Intergenic -65320 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 316-285 chr2 118257870 118258116 + 2 NA Intergenic L1M5|LINE|L1 -71607 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 231-130 chr17 73675460 73675615 + 2 NA Intergenic L1ME2|LINE|L1 -31092 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 142-58 chr5 2412250 2412358 + 2 NA Intergenic Intergenic -100103 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 342-166 chr15 88329912 88330238 + 2 NA Intergenic Intergenic -73336 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 215-107 chr16 76332451 76332607 + 2 NA intron (NM_001322191, intron 2 of 22) AluJo|SINE|Alu 22677 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 259-326 chr5 126957129 126957306 + 2 NA intron (NM_178450, intron 1 of 4) L1M5|LINE|L1 73341 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 374-379 chr8 46473876 46474199 + 2 NA Intergenic ALR/Alpha|Satellite|centr 143606 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 180-112 chr4 41460108 41460253 + 2 NA intron (NM_001289122, intron 1 of 25) MER3|DNA|hAT-Charlie -77977 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 321-466 chr5 75521387 75521671 + 2 NA intron (NM_001345921, intron 1 of 13) L1M3f|LINE|L1 -9548 NM_001130105 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 193-80 chr17 34782847 34782982 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 178546 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 322-360 chr3 181342257 181342535 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 100090 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 309-333 chr3 4169881 4170139 + 2 NA Intergenic Intergenic -133294 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 365-146 chr16 78651394 78651680 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 551883 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 321-88 chr11 9618185 9618353 + 2 NA Intergenic L2a|LINE|L2 43582 NM_001143976 7465 Hs.249441 NM_003390 ENSG00000166483 WEE1 WEE1A|WEE1hu WEE1 G2 checkpoint kinase protein-coding 366-176 chr18 37237695 37238014 + 2 NA Intergenic Intergenic -36606 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 295-253 chr20 33302440 33302698 + 2 NA intron (NM_033197, intron 10 of 15) L2b|LINE|L2 19355 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 641-43 chr15 87406899 87407441 + 2 NA Intergenic LTR39|LTR|ERV1 -169759 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 285-174 chr19 30318624 30318816 + 2 NA Intergenic Intergenic -53664 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 341-433 chr5 39557756 39558066 + 2 NA Intergenic Intergenic 37480 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 554-156 chr4 57994637 57995064 + 2 NA Intergenic MIRb|SINE|MIR 541478 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 310-70 chr11 2278569 2278781 + 2 NA Intergenic L1MEc|LINE|L1 -7723 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 245-273 chr5 14820088 14820331 + 2 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 5803 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 213-91 chr14 78654665 78654813 + 2 NA intron (NR_073547, intron 6 of 20) L2a|LINE|L2 251020 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 277-13 chr1 93071248 93071481 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -7871 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 444-38 chr11 40328413 40328719 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -35436 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 314-421 chr4 56584526 56584717 + 2 NA intron (NM_001256475, intron 6 of 8) intron (NM_001256475, intron 6 of 8) 54015 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 303-14 chr1 152837783 152838032 + 2 NA Intergenic Intergenic -4949 NM_001128600 448835 Hs.62927 NM_001128600 ENSG00000235942 LCE6A C1orf44 late cornified envelope 6A protein-coding 205-155 chr2 178100326 178100481 + 2 NA intron (NM_001077197, intron 2 of 20) intron (NM_001077197, intron 2 of 20) 7936 NM_001077197 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 683-36 chr2 18225191 18225548 + 2 NA Intergenic L1PA15|LINE|L1 335284 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 405-79 chr13 107330518 107330876 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -9734 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 391-115 chr15 26466185 26466517 + 2 NA Intergenic L1PA13|LINE|L1 162739 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 463-157 chr2 217421940 217422266 + 2 NA intron (NR_026597, intron 8 of 12) L2a|LINE|L2 139370 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 327-426 chr5 164040414 164040591 + 2 NA Intergenic MIRb|SINE|MIR 426900 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 463-72 chr12 129679683 129680077 + 2 NA intron (NM_133448, intron 2 of 8) HAL1b|LINE|L1 224145 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 189-134 chr3 162011844 162012001 + 2 NA Intergenic Intergenic 515114 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 389-205 chr20 39338349 39338632 + 2 NA Intergenic Intergenic -113742 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 289-43 chr10 6346543 6346720 + 2 NA Intergenic Intergenic -3685 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 347-103 chr12 104209264 104209448 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -6423 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 362-89 chr11 59227271 59227503 + 2 NA Intergenic Intergenic -14460 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 215-263 chr5 90952734 90952934 + 2 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 361568 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 224-332 chr8 101669553 101669722 + 2 NA TTS (NM_001330593) TTS (NM_001330593) 121332 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 332-25 chr1 165379590 165379762 + 2 NA Intergenic Intergenic -22961 NM_177398 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 246-76 chr11 113358813 113358980 + 2 NA intron (NM_001318533, intron 16 of 21) L1PA13|LINE|L1 -28883 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 509-96 chr18 1906940 1907324 + 2 NA Intergenic Intergenic -547503 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 344-319 chr3 84476556 84476851 + 2 NA Intergenic L1MA5|LINE|L1 392872 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 209-146 chr2 29712159 29712333 + 2 NA intron (NM_004304, intron 2 of 28) intron (NM_004304, intron 2 of 28) 209340 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 348-512 chr8 63695377 63695691 + 2 NA Intergenic L1MB7|LINE|L1 -73896 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 298-450 chr8 37444652 37444891 + 2 NA intron (NR_121620, intron 3 of 6) L1MEf|LINE|L1 49142 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 351-370 chr5 18263294 18263542 + 2 NA Intergenic Intergenic 456144 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 656-95 chr5 53695556 53696078 + 2 NA Intergenic L1MA9|LINE|L1 123865 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 236-307 chr6 89445048 89445212 + 2 NA intron (NM_001242809, intron 1 of 15) Tigger1|DNA|TcMar-Tigger 11952 NM_001242813 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 287-211 chr2 172665393 172665624 + 2 NA Intergenic L1MC4|LINE|L1 -70337 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 393-59 chr11 100299720 100300019 + 2 NA intron (NM_001243270, intron 19 of 23) MIRc|SINE|MIR -387419 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 276-473 chr9 24398724 24398924 + 2 NA Intergenic Intergenic 146852 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 249-338 chr5 100909849 100910035 + 2 NA Intergenic Intergenic -6660 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 380-190 chr2 114765766 114766059 + 2 NA intron (NM_001321910, intron 2 of 26) L1MEd|LINE|L1 67636 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 181-64 chr2 60787313 60787450 + 2 NA intron (NM_022894, intron 14 of 21) intron (NM_022894, intron 14 of 21) 31113 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 116-5 chr10 66916926 66917028 + 2 NA intron (NR_111911, intron 3 of 6) intron (NR_111911, intron 3 of 6) -9059 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 375-152 chr16 7337129 7337347 + 2 NA intron (NM_145893, intron 1 of 13) MIR1_Amn|SINE|MIR 4393 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 385-38 chr10 91487097 91487433 + 2 NA intron (NR_104291, intron 10 of 20) intron (NR_104291, intron 10 of 20) 76980 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 633-4 chr1 153384853 153385472 + 2 NA Intergenic Intergenic 5814 NM_001319201 6279 Hs.416073 NM_002964 ENSG00000143546 S100A8 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 S100 calcium binding protein A8 protein-coding 174-12 chr10 23394018 23394154 + 2 NA Intergenic Intergenic -45183 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 737-80 chr7 56656972 56657567 + 2 NA Intergenic L1M1|LINE|L1 -119139 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 455-106 chr18 69711545 69711972 + 2 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 236115 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 219-78 chr12 111462037 111462232 + 2 NA intron (NM_001310123, intron 18 of 21) intron (NM_001310123, intron 18 of 21) 27272 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 554-173 chr5 63735278 63735744 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac 226781 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 897-26 chr21 22309840 22310610 + 2 NA Intergenic L1ME1|LINE|L1 211608 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 344-449 chr7 7979270 7979607 + 2 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 10642 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 319-273 chr2 173627693 173628006 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack 272977 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 378-338 chr5 50311646 50311905 + 2 NA Intergenic Intergenic 129513 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 371-110 chr14 69644127 69644412 + 2 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 32673 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 351-226 chr2 113052215 113052528 + 2 NA intron (NM_173178, intron 1 of 4) intron (NM_173178, intron 1 of 4) 496 NM_173178 27177 Hs.278909 NM_014438 ENSG00000136696 IL36B FIL1|FIL1-(ETA)|FIL1H|FILI-(ETA)|IL-1F8|IL-1H2|IL1-ETA|IL1F8|IL1H2 interleukin 36 beta protein-coding 266-260 chr3 107874500 107874652 + 2 NA intron (NR_024276, intron 2 of 7) MER34A|LTR|ERV1 3492 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 552-31 chr11 27189544 27190001 + 2 NA intron (NR_125767, intron 2 of 4) L1PB1|LINE|L1 28996 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 234-327 chr5 167632189 167632372 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 58621 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 296-400 chr6 64301626 64301904 + 2 NA intron (NM_001292009, intron 30 of 43) HERVK22-int|LTR|ERVK 494929 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 342-299 chr22 34291208 34291411 + 2 NA Intergenic Intergenic -368421 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 394-185 chr2 156233824 156234119 + 2 NA intron (NR_110250, intron 1 of 3) L1PB1|LINE|L1 20960 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 177-128 chr5 45487454 45487624 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 208841 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 309-509 chr7 44731185 44731487 + 2 NA Intergenic L1M4|LINE|L1 -17230 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 294-35 chr10 43129477 43129657 + 2 NA 3' UTR (NM_020975, exon 20 of 20) 3' UTR (NM_020975, exon 20 of 20) -8878 NM_018590 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 207-25 chr1 227225211 227225336 + 2 NA intron (NM_001366019, intron 2 of 36) intron (NM_001366019, intron 2 of 36) 93219 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 537-268 chr8 138421484 138421834 + 2 NA intron (NM_001362965, intron 1 of 19) L1PA15|LINE|L1 75602 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 512-251 chr7 20723293 20723727 + 2 NA intron (NM_178559, intron 12 of 18) MIR|SINE|MIR 63376 NM_198956 221833 Hs.195922 NM_182700 ENSG00000164651 SP8 BTD Sp8 transcription factor protein-coding 531-130 chr2 226317241 226317636 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 174644 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 167-70 chr20 16189231 16189336 + 2 NA Intergenic Intergenic -203401 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 517-243 chr6 164815587 164815910 + 2 NA intron (NR_131926, intron 1 of 3) L1MEd|LINE|L1 6315 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 381-246 chr3 41473187 41473492 + 2 NA intron (NR_136342, intron 30 of 34) L1MA7|LINE|L1 273834 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 204-55 chr12 39390615 39390733 + 2 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 52446 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 371-384 chr8 91422504 91422789 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 173327 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 407-255 chr5 124383654 124384000 + 2 NA intron (NR_125774, intron 4 of 5) L1MB3|LINE|L1 54693 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 294-5 chr1 55968817 55969045 + 2 NA Intergenic L2b|LINE|L2 23844 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 126-7 chr1 220273990 220274089 + 2 NA Intergenic Intergenic -1586 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 277-434 chr8 133391312 133391496 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -94100 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 364-54 chr10 44237706 44238004 + 2 NA Intergenic MIRb|SINE|MIR -54895 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 315-44 chr10 16647300 16647578 + 2 NA intron (NM_152724, intron 7 of 7) L1MB8|LINE|L1 -125560 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 745-41 chr3 185844069 185844593 + 2 NA Intergenic L3|LINE|CR1 -19289 NM_006548 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 334-397 chr4 127769683 127769957 + 2 NA intron (NM_031291, intron 5 of 5) L2c|LINE|L2 -11976 NM_001317381 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 331-527 chr8 74208302 74208547 + 2 NA Intergenic Intergenic 112937 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 239-392 chr8 16063345 16063552 + 2 NA Intergenic Intergenic 122824 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 331-365 chr3 145006397 145006653 + 2 NA Intergenic Intergenic 1033444 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 367-47 chr10 45515265 45515574 + 2 NA intron (NM_001282866, intron 2 of 7) HAL1b|LINE|L1 19952 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 446-286 chr7 107521413 107521825 + 2 NA intron (NM_181733, intron 6 of 20) L1PA8|LINE|L1 -42338 NR_073004 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 412-65 chr12 15706786 15707038 + 2 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 82476 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 502-140 chr2 78015186 78015578 + 2 NA intron (NR_110288, intron 1 of 3) Tigger1|DNA|TcMar-Tigger -60356 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 595-145 chr6 120127802 120128373 + 2 NA Intergenic L2b|LINE|L2 112908 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 575-208 chr8 142091634 142092163 + 2 NA Intergenic Intergenic -84441 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 774-66 chr5 8552481 8553004 + 2 NA Intergenic Intergenic 91817 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 375-464 chrX 69813313 69813516 + 2 NA intron (NM_001005613, intron 2 of 2) L2c|LINE|L2 197301 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 235-72 chr11 111644668 111644853 + 2 NA intron (NM_015191, intron 3 of 14) intron (NM_015191, intron 3 of 14) 42311 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 167-67 chr2 194943250 194943398 + 2 NA Intergenic Intergenic 212729 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 316-498 chr6 156175295 156175511 + 2 NA Intergenic Intergenic -203347 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 573-154 chr5 119926218 119926617 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 296858 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 392-345 chr9 27593166 27593513 + 2 NA Intergenic L1PA16|LINE|L1 -19473 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 354-228 chr2 147028687 147028981 + 2 NA Intergenic Intergenic 441777 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 398-319 chr7 35631035 35631306 + 2 NA Intergenic Intergenic 63965 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 530-227 chr7 19458355 19458730 + 2 NA Intergenic L1PB4|LINE|L1 246894 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 551-110 chr21 27626302 27626770 + 2 NA Intergenic L2|LINE|L2 -95843 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 615-57 chr2 952494 952891 + 2 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -1300 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 322-221 chr18 65090649 65090952 + 2 NA Intergenic Intergenic -659452 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 353-412 chr5 86465810 86466027 + 2 NA Intergenic HERVL-int|LTR|ERVL -152023 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 388-86 chr12 108118140 108118492 + 2 NA Intergenic L1MA9|LINE|L1 -10972 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 393-255 chr4 174104988 174105303 + 2 NA intron (NR_125896, intron 2 of 4) MER63C|DNA|hAT-Blackjack 115253 NR_125896 101928509 Hs.147719 NR_125896 ENSG00000248174 LINC02268 - long intergenic non-protein coding RNA 2268 ncRNA 225-283 chr5 84692598 84692752 + 2 NA Intergenic L2a|LINE|L2 -307795 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 319-488 chr7 3864006 3864293 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -265536 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 311-195 chr17 29346081 29346292 + 2 NA Intergenic AluYk11|SINE|Alu -44476 NR_039749 100616122 NR_039749 ENSG00000284162 MIR4523 - microRNA 4523 ncRNA 211-144 chr2 105970317 105970495 + 2 NA Intergenic Intergenic -95282 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 319-426 chr5 120639590 120639847 + 2 NA intron (NM_001308088, intron 3 of 3) L1PA16|LINE|L1 108254 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 147-32 chr16 79093836 79093959 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 506840 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 533-53 chr14 66164386 66164760 + 2 NA Intergenic MER74A|LTR|ERVL -321798 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 343-22 chr1 103470896 103471129 + 2 NA intron (NM_001347929, intron 1 of 5) intron (NM_001347929, intron 1 of 5) 54499 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 249-67 chr11 8536372 8536578 + 2 NA intron (NM_030906, intron 1 of 13) HAL1|LINE|L1 57501 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 387-118 chr15 66978835 66979180 + 2 NA Intergenic AluSx1|SINE|Alu -22492 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 359-427 chr6 74821586 74821892 + 2 NA Intergenic L1MA5|LINE|L1 307043 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 422-114 chr17 51549824 51550039 + 2 NA Intergenic Intergenic 114504 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 296-354 chr5 12147332 12147501 + 2 NA Intergenic L1PB4|LINE|L1 -242970 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 201-83 chr14 85725435 85725596 + 2 NA Intergenic Intergenic 192166 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 355-344 chr3 174360535 174360773 + 2 NA Intergenic MamGyp-int|LTR|Gypsy -439858 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 316-24 chr1 152691254 152691430 + 2 NA Intergenic L1PA8|LINE|L1 5219 NM_014357 26239 Hs.234766 NM_014357 ENSG00000159455 LCE2B LEP10|SPRL1B|XP5 late cornified envelope 2B protein-coding 256-294 chr4 103684464 103684640 + 2 NA intron (NM_001059, intron 1 of 4) L1MD|LINE|L1 35433 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 425-238 chr5 116239047 116239348 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) -16546 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 611-137 chr7 56316389 56316794 + 2 NA Intergenic AluSx|SINE|Alu 131784 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 277-409 chr8 77378960 77379198 + 2 NA Intergenic Intergenic -71618 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 350-166 chr16 63191818 63192074 + 2 NA Intergenic Intergenic -1155508 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 437-45 chr11 98418875 98419257 + 2 NA Intergenic Intergenic -601883 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 229-153 chr18 2045752 2045926 + 2 NA Intergenic Intergenic 525666 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 310-517 chr8 84185368 84185674 + 2 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 855 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 375-57 chr10 88639896 88640249 + 2 NA Intergenic Intergenic -24370 NM_001198830 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 287-226 chr20 53354636 53354866 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 169468 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 339-472 chr5 156438453 156438633 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 111379 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 426-248 chr5 120148791 120149173 + 2 NA Intergenic Intergenic -315296 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 429-200 chr3 145068264 145068669 + 2 NA Intergenic Intergenic 1000719 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 312-458 chr6 120282152 120282354 + 2 NA Intergenic Intergenic 267074 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 347-68 chr11 35648351 35648562 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -14319 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 506-183 chr3 82634121 82634475 + 2 NA Intergenic Intergenic 648156 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 341-529 chr8 103113102 103113404 + 2 NA Intergenic Intergenic -7779 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 359-187 chr17 69825623 69825971 + 2 NA intron (NR_109972, intron 3 of 4) AluSz|SINE|Alu -135910 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 284-31 chr10 45588220 45588407 + 2 NA intron (NM_145021, intron 1 of 6) intron (NM_145021, intron 1 of 6) 6593 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 384-327 chr6 145709734 145709943 + 2 NA intron (NM_001360064, intron 1 of 3) intron (NM_001360064, intron 1 of 3) -22961 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 330-311 chr2 226954070 226954309 + 2 NA intron (NM_001349069, intron 8 of 8) intron (NM_001349069, intron 8 of 8) 118135 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 344-511 chr8 139042819 139043130 + 2 NA Intergenic AluSx|SINE|Alu -128933 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 139-3 chr1 110976917 110977004 + 2 NA Intergenic Intergenic -13016 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 353-484 chr7 41743878 41744153 + 2 NA intron (NR_027118, intron 2 of 3) L2c|LINE|L2 -40925 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 350-178 chr17 58106510 58106717 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 23194 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 354-170 chr17 34290233 34290494 + 2 NA Intergenic Intergenic 4621 NM_002986 6356 Hs.54460 NM_002986 ENSG00000172156 CCL11 SCYA11 C-C motif chemokine ligand 11 protein-coding 372-513 chr9 68485968 68486270 + 2 NA intron (NM_021965, intron 9 of 10) intron (NM_021965, intron 9 of 10) 54748 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 284-274 chr3 191432120 191432353 + 2 NA intron (NR_120606, intron 1 of 6) MLT1A0|LTR|ERVL-MaLR 6712 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 288-454 chr8 129800321 129800593 + 2 NA Intergenic L1MA3|LINE|L1 -13833 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 202-255 chr8 98927627 98927806 + 2 NA intron (NM_001256312, intron 1 of 12) MIR|SINE|MIR 14894 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 197-61 chr15 24765081 24765270 + 2 NA Intergenic L1MB2|LINE|L1 -58433 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 183-43 chr13 51187456 51187595 + 2 NA Intergenic HAL1M8|LINE|L1 -15137 NR_102431 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 130-61 chr4 70099782 70099905 + 2 NA Intergenic L1ME3Cz|LINE|L1 32457 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 191-207 chr8 77562141 77562282 + 2 NA Intergenic Intergenic 111514 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 358-439 chr7 54489007 54489306 + 2 NA Intergenic Intergenic -53169 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 208-226 chr6 8316426 8316549 + 2 NA Intergenic L1MD1|LINE|L1 119058 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 504-13 chr1 188553852 188554326 + 2 NA Intergenic Intergenic 1110461 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 256-129 chr14 84822864 84823063 + 2 NA Intergenic Intergenic -448969 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 298-356 chr5 25943040 25943302 + 2 NA Intergenic Intergenic 752218 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 318-512 chr7 54559456 54559749 + 2 NA non-coding (NR_038994, exon 2 of 4) non-coding (NR_038994, exon 2 of 4) 2632 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 180-162 chr7 112199833 112199978 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 6494 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 349-191 chr16 13601079 13601388 + 2 NA Intergenic MIR|SINE|MIR -318924 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 617-32 chr13 105359380 105359803 + 2 NA Intergenic Intergenic -106276 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 468-235 chr4 184122768 184123064 + 2 NA intron (NM_153343, intron 3 of 7) intron (NM_153343, intron 3 of 7) 94957 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 231-175 chr2 115433327 115433492 + 2 NA intron (NM_001321912, intron 4 of 25) (TG)n|Simple_repeat|Simple_repeat 89594 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 673-26 chr12 65221760 65222106 + 2 NA intron (NM_014319, intron 4 of 12) AluSx|SINE|Alu 52350 NM_001167614 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 279-246 chr3 19800077 19800266 + 2 NA Intergenic L1MEg|LINE|L1 134046 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 417-183 chr3 131102993 131103339 + 2 NA intron (NM_001353034, intron 5 of 18) L1P4a|LINE|L1 75438 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 324-165 chr14 71900475 71900778 + 2 NA Intergenic Intergenic -31545 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 652-125 chr9 13319395 13319885 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -39927 NM_001330637 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 715-46 chr20 20916766 20917143 + 2 NA Intergenic L1M4|LINE|L1 189404 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 214-43 chr10 76533429 76533614 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -354523 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 244-12 chr1 88047494 88047685 + 2 NA Intergenic Intergenic -636555 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 576-150 chr6 72540479 72540923 + 2 NA Intergenic L1MA5|LINE|L1 -81142 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 396-361 chr8 135041905 135042292 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -192033 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 515-48 chr11 112768167 112768452 + 2 NA Intergenic Intergenic -193111 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 290-203 chr2 39940235 39940442 + 2 NA intron (NR_038441, intron 2 of 4) MLT1A0-int|LTR|ERVL-MaLR 22704 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 304-398 chr4 180508085 180508330 + 2 NA Intergenic L1ME1|LINE|L1 650942 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 306-6 chr1 47611524 47611755 + 2 NA Intergenic L1MC4a|LINE|L1 -174322 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 476-29 chr10 82382280 82382673 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -149556 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 294-233 chr2 134641542 134641715 + 2 NA intron (NM_030923, intron 2 of 7) L1ME1|LINE|L1 77372 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 269-443 chrX 122492095 122492335 + 2 NA Intergenic Intergenic -692028 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 898-27 chr5 13698942 13699548 + 2 NA intron (NM_001369, intron 78 of 78) L2c|LINE|L2 245235 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 330-223 chr18 35892681 35892851 + 2 NA Intergenic MLT2B3|LTR|ERVL 12160 NR_029616 406963 NR_029616 ENSG00000207797 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 346-33 chr1 199500101 199500322 + 2 NA Intergenic L1PB4|LINE|L1 351613 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 155 chr1 12350442 12350562 + 2 NA intron (NM_015378, intron 46 of 69) L1ME2|LINE|L1 120472 NM_018156 55187 Hs.439381 NM_015378 ENSG00000048707 VPS13D SCAR4 vacuolar protein sorting 13 homolog D protein-coding 562-130 chr21 31977149 31977630 + 2 NA intron (NM_014586, intron 7 of 10) intron (NM_014586, intron 7 of 10) 104369 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 342-264 chr2 194633479 194633684 + 2 NA Intergenic AluY|SINE|Alu -97014 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 318-517 chr7 70386580 70386825 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -745442 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 191-169 chr5 50951396 50951539 + 2 NA Intergenic Intergenic 18720 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 357-216 chr2 129695507 129695723 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 181876 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 228-350 chr8 124980234 124980442 + 2 NA TTS (NM_152412) TTS (NM_152412) 7043 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 174-59 chr2 18983129 18983257 + 2 NA Intergenic MIR|SINE|MIR 43778 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 502-237 chr6 162907578 162907969 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 146388 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 358-238 chr2 189940879 189941159 + 2 NA Intergenic L1M3f|LINE|L1 121710 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 352-492 chr7 41101462 41101698 + 2 NA promoter-TSS (NR_110832) promoter-TSS (NR_110832) -24 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 333-490 chr5 174964372 174964703 + 2 NA intron (NR_046113, intron 2 of 2) MLT1G-int|LTR|ERVL-MaLR 31194 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 574-159 chr7 7702670 7703115 + 2 NA intron (NM_002947, intron 2 of 7) intron (NM_002947, intron 2 of 7) 15715 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 130-8 chr1 246741084 246741153 + 2 NA intron (NM_016002, intron 4 of 11) intron (NM_016002, intron 4 of 11) 16709 NM_016002 51097 Hs.498397 NM_016002 ENSG00000143653 SCCPDH CGI-49|NET11 saccharopine dehydrogenase (putative) protein-coding 214-54 chr10 131427529 131427692 + 2 NA Intergenic Intergenic -115889 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 451-251 chr9 40926513 40926859 + 2 NA Intergenic CER|Satellite|Satellite 2406 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 1041 chr10 64003161 64003779 + 2 NA Intergenic L1MC5a|LINE|L1 -481580 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 154-72 chr3 106247354 106247500 + 2 NA Intergenic Intergenic -378026 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 352-530 chr8 84744235 84744426 + 2 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 38403 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 254-339 chr6 16515516 16515710 + 2 NA intron (NM_000332, intron 6 of 8) intron (NM_000332, intron 6 of 8) 244571 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 355-32 chr10 8489753 8490054 + 2 NA Intergenic Intergenic 104488 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 198-106 chr19 28337682 28337853 + 2 NA Intergenic Intergenic -268921 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 222-98 chr13 68455191 68455378 + 2 NA Intergenic L1ME3|LINE|L1 430041 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 136-39 chr17 57689318 57689421 + 2 NA Intergenic Intergenic 55930 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 677-55 chr3 6230928 6231457 + 2 NA Intergenic Intergenic 574257 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 486-96 chr15 26293647 26294088 + 2 NA Intergenic Intergenic 178054 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 336-155 chr13 111864960 111865153 + 2 NA Intergenic Intergenic -28322 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 212-281 chr6 57010953 57011163 + 2 NA TTS (NM_001318539) TTS (NM_001318539) -35474 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 255-148 chr16 72496426 72496620 + 2 NA intron (NR_159371, intron 3 of 5) intron (NR_159371, intron 3 of 5) 168447 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 282-294 chr3 53662234 53662460 + 2 NA intron (NM_001128840, intron 5 of 47) intron (NM_001128840, intron 5 of 47) 167736 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 304-237 chr2 7171878 7172153 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -94135 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 178-78 chr21 17075084 17075244 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -363726 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 611-50 chr16 26006586 26007088 + 2 NA intron (NM_006040, intron 1 of 1) LTR8A|LTR|ERV1 -18400 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 395-192 chr2 223048506 223048822 + 2 NA Intergenic MIRb|SINE|MIR -3266 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 345-57 chr10 41878109 41878414 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 489784 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 294-421 chr6 147035477 147035695 + 2 NA intron (NR_034115, intron 5 of 10) MER4D1|LTR|ERV1 -123339 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 225-330 chr7 50060405 50060559 + 2 NA intron (NM_007009, intron 3 of 7) L1P4e|LINE|L1 32764 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 147-88 chr9 33414850 33414965 + 2 NA Intergenic Intergenic -12225 NM_001318158 364 Hs.455323 NM_001170 ENSG00000165269 AQP7 AQP7L|AQPap|GLYCQTL aquaporin 7 protein-coding 296-97 chr12 21352321 21352500 + 2 NA intron (NM_134431, intron 2 of 15) intron (NM_134431, intron 2 of 15) -2550 NM_001329201 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 347-211 chr2 52743326 52743618 + 2 NA Intergenic Intergenic -40857 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 362-245 chr20 4269899 4270252 + 2 NA Intergenic L1MEg|LINE|L1 -20788 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 646-107 chr5 141441217 141441732 + 2 NA intron (NM_003735, intron 1 of 3) intron (NM_003735, intron 1 of 3) 10967 NM_032094 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 384-59 chr11 66493192 66493387 + 2 NA intron (NM_130443, intron 11 of 17) MIRc|SINE|MIR 12855 NM_130443 10072 Hs.502914 NM_005700 ENSG00000254986 DPP3 DPPIII dipeptidyl peptidase 3 protein-coding 384-288 chr5 35354623 35354911 + 2 NA Intergenic Intergenic -124280 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 705-90 chr6 145855902 145856358 + 2 NA intron (NR_038246, intron 2 of 2) L1PA2|LINE|L1 41254 NR_038245 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 391-35 chr10 44818801 44819173 + 2 NA intron (NR_033842, intron 7 of 7) intron (NR_033842, intron 7 of 7) -92329 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 337-196 chr16 81135035 81135277 + 2 NA intron (NM_052892, intron 33 of 43) AluYj4|SINE|Alu -38761 NR_033249 2653 Hs.546256 NM_004483 ENSG00000140905 GCSH GCE|NKH glycine cleavage system protein H protein-coding 591-143 chr5 173659223 173659805 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -29945 NR_146727 105377736 Hs.582570 NR_146727 ENSG00000253428 LINC01942 - long intergenic non-protein coding RNA 1942 ncRNA 142-15 chr12 30577654 30577761 + 2 NA Intergenic Intergenic 99537 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 323-224 chr2 5878902 5879186 + 2 NA Intergenic Intergenic -53643 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 623-68 chr2 150382690 150383120 + 2 NA Intergenic L1PB3|LINE|L1 104790 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 380-202 chr2 147284247 147284520 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger -560134 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 227-175 chr2 101227531 101227664 + 2 NA Intergenic Intergenic -25289 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 398-268 chr5 43253293 43253616 + 2 NA intron (NR_072980, intron 2 of 3) L2c|LINE|L2 59727 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 334-270 chr2 81231435 81231643 + 2 NA Intergenic Intergenic 235407 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 192-54 chr12 118744246 118744425 + 2 NA Intergenic L2c|LINE|L2 17344 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 292-62 chr10 116547781 116547978 + 2 NA intron (NM_000936, intron 3 of 12) intron (NM_000936, intron 3 of 12) 1948 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 274-181 chr19 15670811 15671040 + 2 NA Intergenic Intergenic -2162 NM_023944 66002 Hs.131459 NM_023944 ENSG00000186204 CYP4F12 CYPIVF12|F22329_1 cytochrome P450 family 4 subfamily F member 12 protein-coding 285-284 chr3 146235065 146235229 + 2 NA intron (NM_001128304, intron 2 of 10) L1MD2|LINE|L1 15468 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 289-82 chr11 58812946 58813135 + 2 NA Intergenic MER4-int|LTR|ERV1 31664 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 296-128 chr13 113603998 113604218 + 2 NA intron (NM_007111, intron 2 of 11) AluJb|SINE|Alu 19355 NM_007111 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 580-70 chr19 23149252 23149591 + 2 NA Intergenic L1M2|LINE|L1 32396 NM_001277403 100129543 Hs.427120 NM_001277403 ENSG00000183850 ZNF730 - zinc finger protein 730 protein-coding 350-245 chr2 142080849 142081143 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 50705 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 529-194 chr6 51749353 51749835 + 2 NA intron (NM_138694, intron 57 of 66) MIR|SINE|MIR 127724 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 478-234 chr5 40727467 40727903 + 2 NA intron (NM_012382, intron 4 of 4) intron (NM_012382, intron 4 of 4) 28276 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 363-85 chr11 82561998 82562256 + 2 NA Intergenic Intergenic -158214 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 250-19 chr1 115853432 115853656 + 2 NA Intergenic L1MA4|LINE|L1 -12418 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 673-58 chr2 81701377 81701835 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -234660 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 208-197 chr4 136073293 136073442 + 2 NA Intergenic L2|LINE|L2 -159687 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 228-101 chr14 77090122 77090321 + 2 NA Intergenic LTR29|LTR|ERV1 -8037 NM_033426 85457 Hs.709066 NM_033426 ENSG00000198894 CIPC KIAA1737 CLOCK interacting pacemaker protein-coding 655-54 chr2 34306342 34306851 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 239370 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 385-53 chr11 76108633 76109010 + 2 NA intron (NM_003369, intron 13 of 14) intron (NM_003369, intron 13 of 14) 97681 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 483-230 chr6 69941016 69941460 + 2 NA intron (NM_001858, intron 9 of 50) MIRb|SINE|MIR 74682 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 355-170 chr15 63773902 63774172 + 2 NA intron (NM_003922, intron 2 of 77) L2a|LINE|L2 59911 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 389-353 chr7 155905344 155905662 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -55716 NR_144629 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 348-569 chrX 66359211 66359500 + 2 NA Intergenic L1MA3|LINE|L1 191605 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 291-501 chrX 27104239 27104474 + 2 NA Intergenic L2a|LINE|L2 358985 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 334-157 chr14 79609442 79609702 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 330192 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 897-32 chr5 46187487 46188110 + 2 NA Intergenic ALR/Alpha|Satellite|centr -491418 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 267-187 chr2 59928052 59928253 + 2 NA Intergenic L2b|LINE|L2 454884 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 214-173 chr2 166039721 166039860 + 2 NA intron (NR_148667, intron 15 of 28) MIRc|SINE|MIR -41741 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 275-134 chr16 73962556 73962732 + 2 NA Intergenic Intergenic 252877 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 317-290 chr22 49176179 49176441 + 2 NA Intergenic Intergenic 309540 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 640-104 chr5 13265816 13266325 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -233184 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 363-392 chr6 104383073 104383365 + 2 NA Intergenic L1PA17|LINE|L1 476327 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 565-21 chr11 1804614 1804997 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -29622 NM_001290332 90019 Hs.161031 NM_138567 ENSG00000149043 SYT8 - synaptotagmin 8 protein-coding 365-19 chr1 115903106 115903444 + 2 NA Intergenic L1ME2|LINE|L1 -16101 NR_125969 101928995 Hs.559119 NR_125969 ENSG00000228127 LINC01649 - long intergenic non-protein coding RNA 1649 ncRNA 523-25 chr10 37873273 37873691 + 2 NA Intergenic Intergenic -15379 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 482-49 chr11 43016558 43016851 + 2 NA Intergenic Intergenic 252665 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 387-95 chr13 54608753 54609048 + 2 NA Intergenic L1MEd|LINE|L1 -296852 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 310-341 chr3 123837517 123837713 + 2 NA intron (NM_001321309, intron 2 of 32) L1MB8|LINE|L1 46717 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 739-75 chrX 93916890 93917469 + 2 NA Intergenic Intergenic 242973 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 350-78 chr11 85549046 85549250 + 2 NA intron (NM_001142699, intron 3 of 27) L1PA7|LINE|L1 78122 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 164-7 chr1 191039361 191039453 + 2 NA Intergenic Intergenic 189091 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 317-30 chr1 190794313 190794625 + 2 NA intron (NR_033922, intron 4 of 4) (AT)n|Simple_repeat|Simple_repeat 169579 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 368-164 chr15 70929448 70929788 + 2 NA intron (NM_017691, intron 7 of 15) Tigger1|DNA|TcMar-Tigger 37175 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 465-313 chr9 23493647 23494031 + 2 NA Intergenic Intergenic 178560 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 396-364 chr8 137610359 137610697 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -196940 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 289-177 chr17 52467483 52467730 + 2 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 77084 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 435-127 chr2 133966970 133967321 + 2 NA Intergenic AluJr|SINE|Alu -152790 NM_001371457 336-267 chr2 61284900 61285169 + 2 NA intron (NM_014709, intron 34 of 79) intron (NM_014709, intron 34 of 79) 107616 NR_152211 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 391-53 chr11 10351596 10351829 + 2 NA intron (NR_103765, intron 2 of 3) intron (NR_103765, intron 2 of 3) 43399 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 317-425 chr6 113071567 113071833 + 2 NA Intergenic L1MC|LINE|L1 361747 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 218-359 chrX 6017410 6017572 + 2 NA intron (NM_001282145, intron 4 of 6) intron (NM_001282145, intron 4 of 6) -208867 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 280-118 chr14 52178249 52178420 + 2 NA Intergenic Intergenic -89364 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 392-347 chr9 75555634 75555859 + 2 NA Intergenic L2a|LINE|L2 -334898 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 331-137 chr13 65301032 65301212 + 2 NA Intergenic MER65D|LTR|ERV1 -564925 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 328-236 chr19 44407078 44407291 + 2 NA Intergenic L1PB1|LINE|L1 -5576 NM_001291491 26974 Hs.709428 NM_152354 ENSG00000267508 ZNF285 ZNF285A zinc finger protein 285 protein-coding 260-94 chr12 13807910 13808148 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 172327 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 418-65 chr14 46033102 46033487 + 2 NA Intergenic L1MB1|LINE|L1 -30865 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 708-31 chr15 94637050 94637633 + 2 NA Intergenic Intergenic -218022 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 374-93 chr14 25477137 25477444 + 2 NA Intergenic Intergenic -426993 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 270-448 chrX 124744283 124744543 + 2 NA intron (NM_014253, intron 3 of 30) intron (NM_014253, intron 3 of 30) 219404 NM_001163278 10178 Hs.23796 NM_014253 ENSG00000009694 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1|ten-1 teneurin transmembrane protein 1 protein-coding 319-185 chr17 9439819 9440100 + 2 NA intron (NM_004853, intron 6 of 7) intron (NM_004853, intron 6 of 7) 135861 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 226-352 chr8 104791411 104791625 + 2 NA Intergenic Intergenic -202494 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 670-120 chr8 98876274 98876956 + 2 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) -50927 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 183-72 chr2 36739121 36739239 + 2 NA intron (NM_001177969, intron 3 of 14) intron (NM_001177969, intron 3 of 14) 42473 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 599-148 chrM 11221 11706 + 2 NA Intergenic Intergenic -3949 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 152-58 chr20 44892483 44892589 + 2 NA intron (NM_003404, intron 2 of 6) intron (NM_003404, intron 2 of 6) 6831 NM_139323 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 343-547 chr8 101811755 101812084 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -20950 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 263-432 chr8 132968076 132968303 + 2 NA intron (NM_003235, intron 31 of 47) intron (NM_003235, intron 31 of 47) 78392 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 298-429 chr7 42265987 42266143 + 2 NA Intergenic L1MEi|LINE|L1 -28856 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 391-216 chr21 29215264 29215557 + 2 NA intron (NR_027072, intron 1 of 1) L1MA10|LINE|L1 21916 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 563-66 chr17 8033747 8034293 + 2 NA Intergenic AluSx1|SINE|Alu -5020 NM_001039130 247 Hs.111256 NM_001141 ENSG00000179593 ALOX15B 15-LOX-2 arachidonate 15-lipoxygenase type B protein-coding 297-159 chr16 51499615 51499851 + 2 NA Intergenic Intergenic -262786 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 336-481 chr6 40276735 40277024 + 2 NA Intergenic Intergenic 79127 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 237-134 chr16 59223203 59223424 + 2 NA Intergenic Intergenic -488997 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 249-103 chr13 64288254 64288433 + 2 NA Intergenic L1PB2|LINE|L1 -212332 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 434-84 chr14 75328621 75328939 + 2 NA Intergenic Intergenic 34376 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 223-294 chr5 156877893 156878069 + 2 NA Intergenic MIRb|SINE|MIR 27686 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 285-197 chr2 62576339 62576559 + 2 NA Intergenic Intergenic -70254 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 213-254 chr6 147999266 147999444 + 2 NA Intergenic MER57D|LTR|ERV1 -272973 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 213-87 chr14 56068911 56069078 + 2 NA Intergenic L1ME3|LINE|L1 -49417 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 575-138 chr4 98029605 98030055 + 2 NA intron (NM_174952, intron 5 of 10) ERVL-E-int|LTR|ERVL 113646 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 335-546 chr8 123585494 123585704 + 2 NA Intergenic Intergenic -44393 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 504-148 chr20 16136592 16136984 + 2 NA Intergenic L1MB7|LINE|L1 -150906 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 494-48 chr12 28742358 28742679 + 2 NA Intergenic L1MEj|LINE|L1 -406760 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 424-80 chr15 72151114 72151439 + 2 NA Intergenic L2a|LINE|L2 32873 NM_145204 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 382-88 chr13 39287137 39287490 + 2 NA Intergenic L1PREC2|LINE|L1 248857 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 995-3 chr10 129719448 129720238 + 2 NA intron (NM_002412, intron 3 of 4) MIRb|SINE|MIR 123531 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 311-430 chr6 2614069 2614246 + 2 NA Intergenic L1PREC2|LINE|L1 -20343 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 240-162 chr15 87161653 87161880 + 2 NA Intergenic Intergenic -173340 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 581-163 chr8 35435392 35435807 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -108793 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 515-74 chr14 83829645 83830003 + 2 NA Intergenic Intergenic 1187192 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 357-325 chr5 6416039 6416263 + 2 NA Intergenic Intergenic -32708 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 537-235 chr7 50560647 50561150 + 2 NA intron (NM_001082971, intron 1 of 14) intron (NM_001082971, intron 1 of 14) 173 NM_001242887 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 399-199 chr3 6266621 6266842 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 538718 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 690-41 chr15 52249726 52250173 + 2 NA intron (NM_018728, intron 13 of 40) LTR86A1|LTR|ERVL 27251 NR_031670 100302202 NR_031670 ENSG00000221052 MIR1266 MIRN1266|hsa-mir-1266|mir-1266 microRNA 1266 ncRNA 530-49 chr12 2698802 2699156 + 2 NA Intergenic L1MB2|LINE|L1 -7822 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 262-15 chr1 82343026 82343240 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 540680 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 421-68 chr13 79912855 79913226 + 2 NA intron (NR_120413, intron 3 of 5) L3|LINE|CR1 40454 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 243-163 chr17 42419010 42419151 + 2 NA intron (NM_012232, intron 1 of 1) AluJo|SINE|Alu 4176 NM_012232 284119 Hs.437191 NM_012232 ENSG00000177469 CAVIN1 CAVIN|CGL4|FKSG13|PTRF|cavin-1 caveolae associated protein 1 protein-coding 244-141 chr19 21532480 21532687 + 2 NA intron (NM_001001415, intron 3 of 3) intron (NM_001001415, intron 3 of 3) 26981 NM_001346915 353088 Hs.572567 NM_001001415 ENSG00000197013 ZNF429 - zinc finger protein 429 protein-coding 551 chr1 43489490 43489884 + 2 NA Intergenic AluY|SINE|Alu -35698 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 310-521 chr8 89406532 89406794 + 2 NA Intergenic HERV35I-int|LTR|ERV1 351048 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 130-7 chr1 225292788 225292913 + 2 NA intron (NM_001367479, intron 55 of 85) L1MA5A|LINE|L1 135188 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 337-175 chr15 57012220 57012396 + 2 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 92863 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 334-295 chr2 180889679 180889872 + 2 NA intron (NR_104324, intron 4 of 4) L1ME2|LINE|L1 -90610 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 236-330 chr7 52584743 52584974 + 2 NA Intergenic Intergenic -450775 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 235-281 chr5 45259303 45259492 + 2 NA 3' UTR (NM_021072, exon 8 of 8) 3' UTR (NM_021072, exon 8 of 8) 436983 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 338-391 chr4 113190669 113190882 + 2 NA intron (NM_001354275, intron 3 of 43) MIR|SINE|MIR 38493 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 209-134 chr18 10213558 10213717 + 2 NA Intergenic Intergenic 200733 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 289-419 chr6 129974948 129975137 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -43327 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 336-413 chr4 59253096 59253273 + 2 NA Intergenic Intergenic 239611 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 544-182 chr5 102420508 102420941 + 2 NA intron (NM_173488, intron 7 of 13) L1MEi|LINE|L1 78277 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 159-55 chr22 26137648 26137775 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -31751 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 194-97 chr2 149455452 149455594 + 2 NA intron (NM_194317, intron 3 of 4) AluY|SINE|Alu 124936 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 201-230 chr7 50931069 50931253 + 2 NA Intergenic L1ME3|LINE|L1 -137708 NM_001371008 225-219 chr3 110768113 110768302 + 2 NA Intergenic L1MEb|LINE|L1 301752 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 553-86 chr17 74020137 74020539 + 2 NA Intergenic L1ME4b|LINE|L1 -183340 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 337-191 chr16 26015927 26016185 + 2 NA intron (NM_006040, intron 1 of 1) MER20|DNA|hAT-Charlie -9181 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 384-338 chr7 9032939 9033275 + 2 NA Intergenic Intergenic 599498 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 270-371 chr7 123012096 123012323 + 2 NA Intergenic Intergenic -16509 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 403-55 chr11 79495969 79496242 + 2 NA Intergenic Intergenic -55075 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 510-50 chr11 80912220 80912573 + 2 NA Intergenic Intergenic -149593 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 212-165 chr2 115852545 115852698 + 2 NA Intergenic Intergenic 508806 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 575-198 chr8 108188816 108189351 + 2 NA Intergenic Intergenic 59634 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 416-155 chr19 35234694 35235060 + 2 NA Intergenic Intergenic -6152 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 264-121 chr14 28326193 28326389 + 2 NA Intergenic Intergenic 439028 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 192-146 chr4 59825840 59825974 + 2 NA Intergenic Intergenic 812334 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 195-130 chr20 55181730 55181876 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -241240 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 276-218 chr2 20971042 20971233 + 2 NA Intergenic Intergenic 72936 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 491-166 chr3 38942189 38942559 + 2 NA intron (NM_014139, intron 3 of 25) L1ME1|LINE|L1 8187 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 406-110 chr17 33475274 33475575 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 58336 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 366-410 chr7 43130599 43130821 + 2 NA intron (NR_135295, intron 3 of 6) Tigger4|DNA|TcMar-Tigger 12814 NR_135295 100127950 Hs.666610 NR_135295 ENSG00000181211 HECW1-IT1 - HECW1 intronic transcript 1 ncRNA 271-392 chr6 142341453 142341653 + 2 NA intron (NM_198569, intron 2 of 24) (AT)n|Simple_repeat|Simple_repeat 39546 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 564-92 chr2 23441909 23442401 + 2 NA intron (NM_052920, intron 1 of 13) AluJb|SINE|Alu 56976 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 337-180 chr15 79259607 79259850 + 2 NA intron (NR_038997, intron 1 of 1) L1MC1|LINE|L1 -22994 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 366-307 chr4 56330484 56330821 + 2 NA TTS (NM_020722) TTS (NM_020722) 56839 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 387-302 chr5 170881597 170881825 + 2 NA intron (NM_022897, intron 2 of 27) intron (NM_022897, intron 2 of 27) 19693 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 290-353 chr5 97976070 97976291 + 2 NA Intergenic Intergenic 135422 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 353-502 chr7 141094617 141094926 + 2 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 20707 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 291-66 chr11 10131770 10132000 + 2 NA intron (NM_030962, intron 2 of 39) L1MD2|LINE|L1 162322 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 283-141 chr14 82224116 82224301 + 2 NA Intergenic Intergenic -418424 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 260-207 chr2 64072437 64072602 + 2 NA Intergenic LTR49-int|LTR|ERV1 -53091 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 284-364 chr6 168753084 168753273 + 2 NA Intergenic L1ME2z|LINE|L1 211204 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 292-118 chr13 24788996 24789198 + 2 NA intron (NM_031277, intron 7 of 35) intron (NM_031277, intron 7 of 35) 24928 NM_031277 56163 Hs.97464 NM_031277 ENSG00000132972 RNF17 Mmip-2|SPATA23|TDRD4 ring finger protein 17 protein-coding 342-271 chr2 234803604 234803816 + 2 NA Intergenic Intergenic 121042 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 367-323 chr4 37478953 37479308 + 2 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 25205 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 305-238 chr2 21307943 21308121 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 184046 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 531-218 chr6 102280473 102280950 + 2 NA Intergenic L1M4c|LINE|L1 881726 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 245-307 chr6 120218423 120218602 + 2 NA Intergenic Intergenic 203333 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 515-214 chr5 111803999 111804438 + 2 NA intron (NM_001142474, intron 2 of 3) L1MC4a|LINE|L1 -46000 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 419-54 chr11 58864538 58864950 + 2 NA Intergenic L1MA8|LINE|L1 -20040 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 416-340 chr8 116326233 116326549 + 2 NA Intergenic Intergenic -1332 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 440-276 chrX 44380270 44380591 + 2 NA Intergenic L2c|LINE|L2 -36758 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 309-343 chr3 39899378 39899549 + 2 NA intron (NM_001284424, intron 1 of 15) L1ME3E|LINE|L1 89803 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 663-64 chr20 53386455 53387003 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -166041 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 208-84 chr16 48146577 48146729 + 2 NA 5' UTR (NM_033226, exon 1 of 29) 5' UTR (NM_033226, exon 1 of 29) 117 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 353-62 chr10 64708894 64709231 + 2 NA Intergenic Intergenic -116466 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 321-604 chr9 103533529 103533843 + 2 NA Intergenic L1PA14|LINE|L1 -208653 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 361-23 chr1 191927863 191928060 + 2 NA Intergenic Intergenic -230501 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 391-341 chr8 54714832 54715195 + 2 NA Intergenic L2a|LINE|L2 98917 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 243-235 chr2 135129711 135129897 + 2 NA intron (NM_001172435, intron 11 of 24) intron (NM_001172435, intron 11 of 24) -6824 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 278-76 chr12 93031674 93031876 + 2 NA intron (NR_040096, intron 3 of 4) L1ME1|LINE|L1 -102480 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 311-553 chrX 34616866 34617157 + 2 NA Intergenic Intergenic 40274 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 371-99 chr13 106325513 106325826 + 2 NA Intergenic Intergenic -50895 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 390-35 chr10 51503336 51503607 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 196124 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 445-200 chr4 77191911 77192254 + 2 NA Intergenic L1MD3|LINE|L1 34875 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 492-237 chr7 14323390 14323775 + 2 NA intron (NM_001350717, intron 22 of 24) L2a|LINE|L2 -332157 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 226-268 chr5 6889937 6890139 + 2 NA Intergenic Intergenic -62117 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 279-347 chr5 154532573 154532837 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -54478 NM_004821 9421 Hs.152531 NM_004821 ENSG00000113196 HAND1 Hxt|Thing1|bHLHa27|eHand heart and neural crest derivatives expressed 1 protein-coding 537-74 chr15 53933130 53933660 + 2 NA Intergenic Intergenic -45046 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 325-130 chr12 78455342 78455534 + 2 NA Intergenic Intergenic -95692 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 345-338 chr3 3630668 3630983 + 2 NA Intergenic Intergenic -168606 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 227-328 chr6 153674996 153675169 + 2 NA Intergenic Tigger9b|DNA|TcMar-Tigger -335414 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 433-135 chr2 98041186 98041481 + 2 NA Intergenic LTR16A2|LTR|ERVL -45385 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 275-171 chr19 39788022 39788255 + 2 NA Intergenic L1M2|LINE|L1 11544 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 246-306 chr4 144383013 144383200 + 2 NA Intergenic Intergenic -242388 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 520-151 chr2 116443703 116444029 + 2 NA Intergenic L1MC3|LINE|L1 1100051 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 330-312 chr2 228088995 228089255 + 2 NA intron (NM_030623, intron 3 of 10) MSTB-int|LTR|ERVL-MaLR 92520 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 326-534 chr8 86978197 86978383 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 111875 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 367-405 chr6 159306710 159306894 + 2 NA Intergenic Intergenic -76729 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 370-23 chr1 188068468 188068719 + 2 NA Intergenic L1MA4A|LINE|L1 624965 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 407-300 chr7 64732883 64733288 + 2 NA Intergenic Intergenic 54021 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 365-403 chr8 104865457 104865685 + 2 NA Intergenic L2a|LINE|L2 -276547 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 255-391 chr7 87005919 87006161 + 2 NA intron (NM_001142749, intron 1 of 21) L1ME2z|LINE|L1 34194 NM_001291990 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 410-94 chr14 85743799 85744198 + 2 NA Intergenic L2a|LINE|L2 -190680 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 332-69 chr10 82166694 82167017 + 2 NA intron (NM_001165973, intron 2 of 10) L1ME4b|LINE|L1 66065 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 166-107 chr6 137234238 137234368 + 2 NA Intergenic Intergenic -14873 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 469-201 chr4 64009146 64009400 + 2 NA Intergenic Intergenic 400177 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 225-66 chr12 9010487 9010639 + 2 NA non-coding (NR_137428, exon 4 of 4) non-coding (NR_137428, exon 4 of 4) 20938 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 274-339 chr6 130982906 130983099 + 2 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) -12519 NM_001350313 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 237-193 chr2 133582509 133582697 + 2 NA Intergenic Intergenic -14140 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 365-172 chr19 49252091 49252447 + 2 NA Intergenic Intergenic 56599 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 159-68 chr4 86577908 86578021 + 2 NA Intergenic MIRb|SINE|MIR -16351 NM_080685 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 204-35 chr10 131682992 131683155 + 2 NA Intergenic MIR|SINE|MIR 107126 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 418-85 chr16 6504765 6505083 + 2 NA intron (NM_018723, intron 2 of 15) AluSx3|SINE|Alu -268885 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 335-168 chr15 27509542 27509850 + 2 NA intron (NM_033223, intron 6 of 9) L1MCa|LINE|L1 -348377 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 341-216 chr19 29312842 29313032 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -99786 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 300-444 chr7 152706234 152706450 + 2 NA Intergenic Intergenic -30201 NM_005431 7516 Hs.647093 NM_005431 ENSG00000196584 XRCC2 FANCU X-ray repair cross complementing 2 protein-coding 315-319 chr3 169737121 169737329 + 2 NA Intergenic L1MA1|LINE|L1 27835 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 369-415 chr8 109966144 109966354 + 2 NA 3' UTR (NM_014379, exon 4 of 4) 3' UTR (NM_014379, exon 4 of 4) 9522 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 454-132 chr19 53492424 53492748 + 2 NA 3' UTR (NM_001004301, exon 4 of 4) 3' UTR (NM_001004301, exon 4 of 4) 24853 NM_001004301 126017 Hs.710780 NM_001004301 ENSG00000198346 ZNF813 - zinc finger protein 813 protein-coding 208-34 chr11 11601233 11601410 + 2 NA intron (NM_001363464, intron 1 of 9) L1PA8A|LINE|L1 20684 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 298-327 chr4 63182002 63182265 + 2 NA Intergenic L1PA4|LINE|L1 -1020368 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 265-130 chr16 6941569 6941793 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 167872 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 360-122 chr14 64663384 64663638 + 2 NA Intergenic Intergenic -40913 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 366-271 chr3 32143272 32143518 + 2 NA intron (NM_015141, intron 4 of 7) L1MC4|LINE|L1 36884 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 372-76 chr11 80328190 80328437 + 2 NA Intergenic Intergenic 434490 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 390-352 chr7 49603027 49603384 + 2 NA Intergenic L1MC3|LINE|L1 -170433 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 316-381 chr4 15305807 15306109 + 2 NA intron (NR_125911, intron 1 of 5) MLT1D|LTR|ERVL-MaLR -34030 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 195-146 chr3 77586872 77586983 + 2 NA intron (NM_001290039, intron 17 of 26) intron (NM_001290039, intron 17 of 26) 462036 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 317-182 chr16 80659233 80659480 + 2 NA intron (NM_152342, intron 2 of 6) L1MC5a|LINE|L1 -86548 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 197-144 chr3 157659483 157659634 + 2 NA Intergenic Intergenic 116214 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 536-237 chr8 122293134 122293495 + 2 NA Intergenic Intergenic 275330 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 298-381 chr5 146601631 146601815 + 2 NA intron (NM_181678, intron 8 of 10) L1PB4|LINE|L1 -85610 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 393-122 chr16 78705170 78705542 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 605702 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 354-157 chr15 86512724 86512968 + 2 NA intron (NM_152336, intron 18 of 24) L1MC4a|LINE|L1 -195878 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 477-29 chr1 237301680 237301956 + 2 NA intron (NM_001035, intron 2 of 104) intron (NM_001035, intron 2 of 104) -169301 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 368-64 chr10 93272934 93273167 + 2 NA Intergenic Intergenic 199157 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 277-296 chr4 133036278 133036472 + 2 NA Intergenic (ATTGTT)n|Simple_repeat|Simple_repeat 112741 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 380-209 chr2 224350548 224350874 + 2 NA Intergenic Intergenic 51283 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 516-138 chr2 177962143 177962455 + 2 NA intron (NM_001077197, intron 3 of 20) L2a|LINE|L2 -39462 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 622-7 chr10 33872970 33873588 + 2 NA Intergenic Intergenic -100599 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 293-446 chr8 117266038 117266261 + 2 NA Intergenic Intergenic 131154 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 464-102 chr18 77501941 77502327 + 2 NA Intergenic Intergenic 252286 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 233-187 chr2 158136536 158136662 + 2 NA TTS (NM_001135098) TTS (NM_001135098) -30051 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 437-205 chr5 2810317 2810721 + 2 NA Intergenic Intergenic 58388 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 291-408 chr7 53357791 53357959 + 2 NA Intergenic Intergenic 322242 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 278-93 chr13 84798566 84798817 + 2 NA Intergenic Intergenic 15037 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 690-92 chr6 122359530 122360083 + 2 NA Intergenic Intergenic -39745 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 232-65 chr11 124231308 124231525 + 2 NA Intergenic L1M5|LINE|L1 6777 NM_001291438 26492 Hs.381319 NM_001291438 OR8G2P HSTPCR120|OR8G2|OR8G4|ORL206|ORL486|TPCR120 olfactory receptor family 8 subfamily G member 2 pseudogene protein-coding 388-269 chr5 13465869 13466092 + 2 NA Intergenic L1M4|LINE|L1 -433094 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 451-186 chr5 146591247 146591643 + 2 NA intron (NM_181678, intron 10 of 10) MIRb|SINE|MIR -75332 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 278-244 chr2 227644070 227644236 + 2 NA Intergenic MER20|DNA|hAT-Charlie -10833 NM_001162483 56918 Hs.283092 NM_020161 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 209-337 chr8 135376801 135376943 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -80584 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 330-287 chr2 120931115 120931296 + 2 NA intron (NM_005270, intron 3 of 13) MLT1D|LTR|ERVL-MaLR 138924 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 400-197 chr20 63391255 63391548 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -30005 NM_000744 1137 Hs.10734 NM_000744 ENSG00000101204 CHRNA4 BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding 393-165 chr2 80541260 80541615 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 228058 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 427-70 chr14 61408241 61408557 + 2 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 86956 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 474-281 chr8 56753345 56753720 + 2 NA Intergenic Intergenic -193709 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 417-292 chr8 136422599 136422902 + 2 NA Intergenic Intergenic -108048 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 306-298 chr3 18639142 18639409 + 2 NA Intergenic MIRb|SINE|MIR -193683 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 238-13 chr1 106155756 106155927 + 2 NA Intergenic Intergenic -127588 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 248-7 chr1 59910203 59910422 + 2 NA intron (NM_000775, intron 4 of 8) L1MC5|LINE|L1 16461 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 255-7 chr1 83700371 83700590 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 160066 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 248-67 chr11 84682979 84683186 + 2 NA intron (NM_001351274, intron 5 of 26) L2b|LINE|L2 37860 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 499-74 chr15 33714458 33714820 + 2 NA intron (NM_001243996, intron 43 of 102) intron (NM_001243996, intron 43 of 102) -253858 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 425-50 chr11 24759897 24760144 + 2 NA intron (NM_001009909, intron 4 of 11) MER4B|LTR|ERV1 262967 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 689-16 chr11 48681808 48682291 + 2 NA Intergenic ALR/Alpha|Satellite|centr 193256 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 253-331 chr5 74520656 74520870 + 2 NA intron (NR_126354, intron 1 of 2) intron (NR_126354, intron 1 of 2) 16213 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 251-189 chr2 164167666 164167828 + 2 NA Intergenic L1MB8|LINE|L1 400748 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 166-26 chr14 46386669 46386807 + 2 NA intron (NR_102702, intron 3 of 3) MER67C|LTR|ERV1 -84621 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 209-115 chr16 13472023 13472215 + 2 NA Intergenic Intergenic -448038 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 415-153 chr20 6975167 6975463 + 2 NA Intergenic Intergenic 207629 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 220-301 chr5 136477048 136477243 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -111669 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 338-258 chr2 60188382 60188588 + 2 NA Intergenic AluJo|SINE|Alu 194551 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 384-393 chr9 27205159 27205486 + 2 NA intron (NM_001290077, intron 13 of 21) MER94|DNA|hAT-Blackjack 77471 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 389-30 chr10 43506651 43506934 + 2 NA Intergenic LTR53|LTR|ERVL 61667 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 496-213 chr5 62057769 62058114 + 2 NA Intergenic MER20|DNA|hAT-Charlie -248221 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 848-15 chr15 95551445 95552183 + 2 NA Intergenic Intergenic 118721 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 398-51 chr11 2322444 2322825 + 2 NA Intergenic L1PA11|LINE|L1 -19494 NR_138249 29125 Hs.559181 NM_014144 ENSG00000110665 C11orf21 - chromosome 11 open reading frame 21 protein-coding 408-91 chr12 125632762 125633129 + 2 NA intron (NM_001286219, intron 1 of 4) L1MA2|LINE|L1 10493 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 367-6 chr1 18426436 18426759 + 2 NA Intergenic LTR49-int|LTR|ERV1 -54333 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 355-277 chr2 240339535 240339822 + 2 NA Intergenic Intergenic -95985 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 255-291 chr4 37731883 37732122 + 2 NA Intergenic L1MC3|LINE|L1 -45626 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 257-175 chr2 14264346 14264547 + 2 NA intron (NR_103814, intron 2 of 3) MIR|SINE|MIR 136512 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 235-47 chr10 72694155 72694350 + 2 NA intron (NM_001270680, intron 1 of 7) intron (NM_001270680, intron 1 of 7) 1633 NM_001270680 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 480-272 chr7 37678975 37679381 + 2 NA Intergenic L1ME3A|LINE|L1 -4588 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 334-223 chr18 22714142 22714315 + 2 NA Intergenic Intergenic 72609 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 336-182 chr15 95256630 95256897 + 2 NA Intergenic L1MD1|LINE|L1 70337 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 257-140 chr16 71323109 71323319 + 2 NA Intergenic L1MC3|LINE|L1 -33492 NM_001324377 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 297-62 chr10 131645044 131645317 + 2 NA Intergenic Intergenic 145019 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 316-112 chr11 101787323 101787576 + 2 NA Intergenic Intergenic -127561 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 342-340 chr3 175927297 175927526 + 2 NA Intergenic L1M5|LINE|L1 -151078 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 342-221 chr2 11981735 11981921 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -25288 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 484-244 chr6 162401457 162401812 + 2 NA intron (NM_004562, intron 2 of 11) MER47A|DNA|TcMar-Tigger -325498 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 161-28 chr14 62191581 62191688 + 2 NA Intergenic MER31-int|LTR|ERV1 -51661 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 379-83 chr13 70630320 70630691 + 2 NA Intergenic MER67D|LTR|ERV1 -384636 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 284-11 chr1 95785900 95786068 + 2 NA Intergenic Intergenic -206084 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 404-155 chr2 23153947 23154212 + 2 NA Intergenic L1MC4|LINE|L1 -231100 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 555-141 chr4 46719718 46720267 + 2 NA Intergenic Intergenic 189253 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 324-58 chr10 63754285 63754448 + 2 NA Intergenic Intergenic -232476 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 351-443 chr7 36089312 36089512 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -5898 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 211-206 chr4 47204364 47204525 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 172877 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 395-19 chr1 191133132 191133366 + 2 NA Intergenic Intergenic 95249 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 323-350 chr3 165700809 165701013 + 2 NA Intergenic Intergenic 136512 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 260-363 chr5 151839920 151840098 + 2 NA intron (NM_000171, intron 7 of 8) L1MB7|LINE|L1 -67833 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 222-114 chr14 82485106 82485263 + 2 NA Intergenic L1ME3|LINE|L1 -157448 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 213-58 chr11 92319838 92319994 + 2 NA intron (NM_001367949, intron 1 of 27) MER103C|DNA|hAT-Charlie -32180 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 319-581 chrX 36599480 36599742 + 2 NA Intergenic L1PA3|LINE|L1 -159319 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 169-60 chr2 83480392 83480516 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -42360 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 346-509 chr8 135312264 135312583 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 78292 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 317-500 chr8 124335100 124335369 + 2 NA intron (NM_194291, intron 1 of 6) L1MEf|LINE|L1 37465 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 388-282 chr5 78798005 78798319 + 2 NA intron (NM_000046, intron 6 of 7) intron (NM_000046, intron 6 of 7) -149390 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 169-57 chr2 22066405 22066538 + 2 NA Intergenic Intergenic -355819 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 427-131 chr2 191537939 191538224 + 2 NA Intergenic Intergenic -139991 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 172-90 chr4 46066884 46067012 + 2 NA intron (NM_173536, intron 3 of 8) intron (NM_173536, intron 3 of 8) 57106 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 487-177 chr3 1107989 1108357 + 2 NA intron (NM_001349352, intron 2 of 23) MamRep1151|LTR?|LTR? 15149 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 182-53 chr14 58548108 58548258 + 2 NA 3' UTR (NM_001364701, exon 31 of 31) 3' UTR (NM_001364701, exon 31 of 31) -85885 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 178-108 chr5 22678129 22678305 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 175127 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 462-241 chr5 160738545 160738999 + 2 NA intron (NM_001366652, intron 2 of 24) L1M5|LINE|L1 -53381 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 476-63 chr12 59535233 59535616 + 2 NA Intergenic SATR2|Satellite|Satellite -60605 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 599-94 chr4 5063647 5064187 + 2 NA intron (NM_001306082, intron 1 of 12) L1ME3F|LINE|L1 12437 NM_018401 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 352-454 chr6 55984521 55984753 + 2 NA Intergenic Intergenic 107025 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 456-67 chr12 104395376 104395754 + 2 NA Intergenic Intergenic -61383 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 247-79 chr12 22098253 22098406 + 2 NA Intergenic L1PREC2|LINE|L1 52111 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 317-334 chr4 29014964 29015214 + 2 NA TTS (NR_146499) TTS (NR_146499) 18305 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 582-37 chr14 62236515 62236991 + 2 NA Intergenic Intergenic -96780 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 552-62 chr14 71247030 71247480 + 2 NA Intergenic Intergenic -73221 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 259-182 chr19 56904568 56904824 + 2 NA Intergenic L1PB3|LINE|L1 63794 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 333-485 chr5 166039033 166039327 + 2 NA Intergenic MSTB1-int|LTR|ERVL-MaLR 887190 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 619-44 chr14 58725360 58725734 + 2 NA Intergenic Intergenic 86710 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 351-155 chr16 7448292 7448506 + 2 NA intron (NM_145893, intron 1 of 13) THE1B|LTR|ERVL-MaLR 115554 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 374-12 chr1 157329431 157329762 + 2 NA Intergenic MER4-int|LTR|ERV1 -191005 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 242-390 chr8 65333872 65334069 + 2 NA Intergenic Intergenic -153630 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 438-239 chr6 57663787 57664070 + 2 NA Intergenic Intergenic 273001 NR_133000 375513 Hs.561539 NM_206908 GUSBP4 C6orf216|GUSBL2|SMA3-L|SMAC3L GUSB pseudogene 4 pseudo 300-486 chr9 29298357 29298507 + 2 NA Intergenic Intergenic -84831 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 277-217 chr2 238184461 238184652 + 2 NA intron (NM_030768, intron 6 of 11) AluJo|SINE|Alu 19139 NM_030768 80895 Hs.92033 NM_030768 ENSG00000132323 ILKAP ILKAP2|ILKAP3|PP2C-DELTA|PPM1O ILK associated serine/threonine phosphatase protein-coding 355-184 chr16 65015808 65016115 + 2 NA intron (NM_001797, intron 2 of 12) intron (NM_001797, intron 2 of 12) 106102 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 336-82 chr11 11366428 11366625 + 2 NA intron (NM_198516, intron 6 of 10) intron (NM_198516, intron 6 of 10) -13276 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 251-13 chr1 115215918 115216093 + 2 NA Intergenic Intergenic -67029 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 501-78 chr16 82985547 82986001 + 2 NA intron (NR_110937, intron 1 of 2) MSTA|LTR|ERVL-MaLR 4524 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 447-140 chr2 177600450 177600732 + 2 NA Intergenic AluJo|SINE|Alu 18151 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 553-130 chr2 143049657 143050051 + 2 NA 3' UTR (NM_003937, exon 14 of 14) 3' UTR (NM_003937, exon 14 of 14) -79565 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 232-365 chr7 114093255 114093411 + 2 NA intron (NR_033766, intron 1 of 19) L2a|LINE|L2 7006 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 160-105 chr7 11274543 11274659 + 2 NA Intergenic Intergenic 300729 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 261-95 chr14 34072838 34073021 + 2 NA Intergenic L1MC4|LINE|L1 -121855 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 472-250 chr5 82563303 82563657 + 2 NA Intergenic L1PREC2|LINE|L1 -276675 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 237-163 chr2 14688696 14688889 + 2 NA Intergenic Intergenic 56075 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 391-390 chrX 99798711 99799005 + 2 NA Intergenic HAL1|LINE|L1 611415 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 199-72 chr16 64940964 64941112 + 2 NA Intergenic Intergenic 181025 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 580-197 chr8 83802732 83803202 + 2 NA Intergenic L1M5|LINE|L1 -379820 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 515-25 chr10 76464510 76464846 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -423366 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 395-7 chr1 67114817 67115205 + 2 NA intron (NR_075077, intron 5 of 9) intron (NR_075077, intron 5 of 9) 19959 NM_001276352 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 355-496 chr8 58874000 58874274 + 2 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) -214284 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 491-37 chr11 84196402 84196714 + 2 NA intron (NM_001142700, intron 1 of 19) intron (NM_001142700, intron 1 of 19) 76722 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 486-66 chr12 133029392 133029857 + 2 NA Intergenic AluY|SINE|Alu 7598 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 380-98 chr12 61101061 61101304 + 2 NA Intergenic L1M1|LINE|L1 1091657 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 248-305 chr5 27362891 27363125 + 2 NA Intergenic L1MCa|LINE|L1 -109284 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 328-7 chr1 56269316 56269540 + 2 NA Intergenic L2b|LINE|L2 -145535 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 320-331 chr3 2816403 2816578 + 2 NA intron (NM_175607, intron 6 of 24) L1PB1|LINE|L1 -75725 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 304-385 chr4 97430664 97430907 + 2 NA intron (NR_102713, intron 1 of 5) intron (NR_102713, intron 1 of 5) 63859 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 135-3 chr1 119715036 119715140 + 2 NA intron (NM_006623, intron 1 of 11) MER112|DNA|hAT-Charlie 3154 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 212-229 chr4 32307194 32307371 + 2 NA Intergenic Intergenic -43756 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 562-196 chr6 150280282 150280825 + 2 NA Intergenic Intergenic -88459 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 243-238 chr2 155262716 155262862 + 2 NA Intergenic Intergenic 564094 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 296-438 chr7 56444633 56444795 + 2 NA intron (NR_029420, intron 1 of 5) L1M4|LINE|L1 3661 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 553-225 chr8 28029182 28029580 + 2 NA exon (NM_001010906, exon 17 of 19) exon (NM_001010906, exon 17 of 19) -36708 NM_173833 286133 Hs.591833 NM_173833 ENSG00000168079 SCARA5 NET33|Tesr scavenger receptor class A member 5 protein-coding 557-224 chrX 93398424 93398773 + 2 NA Intergenic Intergenic 274980 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 334-423 chr5 63660504 63660800 + 2 NA Intergenic L1MC4|LINE|L1 301640 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 188-180 chr6 51595281 51595417 + 2 NA Intergenic L1MA9|LINE|L1 -26521 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 155-69 chr4 32099529 32099677 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -77181 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 311-33 chr1 198101698 198101949 + 2 NA Intergenic Intergenic -55175 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 289-455 chr8 16397601 16397785 + 2 NA Intergenic Intergenic -204902 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 188-206 chr8 107214649 107214783 + 2 NA Intergenic Intergenic 121799 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 437-43 chr11 83898164 83898480 + 2 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -215897 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 647-8 chr1 229976433 229976882 + 2 NA Intergenic L1ME4c|LINE|L1 -26060 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 179-62 chr22 28477519 28477621 + 2 NA intron (NM_001145418, intron 2 of 22) L1MC5|LINE|L1 17701 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 368-182 chr16 77735647 77735979 + 2 NA intron (NM_001243660, intron 3 of 3) intron (NM_001243660, intron 3 of 3) 13299 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 320-77 chr11 14260100 14260358 + 2 NA intron (NM_006108, intron 13 of 15) intron (NM_006108, intron 13 of 15) 98256 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 335-512 chr7 93513257 93513571 + 2 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) -29395 NR_030164 574442 NR_030164 ENSG00000207656 MIR489 MIRN489|hsa-mir-489|mir-489 microRNA 489 ncRNA 369-104 chr14 33363520 33363780 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) -345287 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 228-379 chrX 5378144 5378322 + 2 NA Intergenic Intergenic -744661 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 191-52 chr14 37905994 37906149 + 2 NA Intergenic Intergenic -3947 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 639-21 chr11 32174052 32174544 + 2 NA Intergenic AluJo|SINE|Alu -30386 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 215-171 chr20 37671391 37671551 + 2 NA Intergenic Intergenic -5439 NR_040021 100287792 Hs.517026 NM_001001690 ENSG00000204117 LOC100287792 - uncharacterized LOC100287792 ncRNA 301-78 chr11 112621854 112622109 + 2 NA Intergenic L2a|LINE|L2 -66179 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 201-81 chr14 78766240 78766432 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 362617 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 399-208 chr3 67923482 67923824 + 2 NA intron (NR_109992, intron 6 of 6) L1MD2|LINE|L1 -67939 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 453-280 chr8 84479625 84480012 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 64334 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 387-92 chr12 128731964 128732300 + 2 NA Intergenic LTR16E1|LTR|ERVL 91826 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 354-28 chr1 185016711 185017038 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 15347 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 545-34 chr11 15524458 15524828 + 2 NA Intergenic L1ME3C|LINE|L1 -119242 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 387-218 chr3 17196348 17196672 + 2 NA intron (NM_014744, intron 18 of 21) intron (NM_014744, intron 18 of 21) 263314 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 354-27 chr1 183252946 183253218 + 2 NA intron (NM_170706, intron 10 of 10) MIR|SINE|MIR 51792 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 559-4 chr1 105849521 105849910 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 178538 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 311-3 chr1 33416939 33417122 + 2 NA Intergenic L1MEc|LINE|L1 -41437 NM_001330488 1912 Hs.524271 NM_004427 ENSG00000134686 PHC2 EDR2|HPH2|PH2 polyhomeotic homolog 2 protein-coding 298-107 chr13 51190537 51190729 + 2 NA Intergenic Intergenic -18245 NR_102431 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 369-272 chr3 115210516 115210807 + 2 NA Intergenic L2c|LINE|L2 -63373 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 266-278 chr4 41799608 41799785 + 2 NA Intergenic Intergenic -50726 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 323-379 chr4 106009284 106009449 + 2 NA intron (NR_125928, intron 3 of 3) L1PB1|LINE|L1 13112 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 446-90 chr13 22006227 22006489 + 2 NA Intergenic Intergenic -128198 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 313-79 chr11 36322275 36322535 + 2 NA intron (NM_001160167, intron 1 of 8) intron (NM_001160167, intron 1 of 8) 26117 NM_001160167 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 327-515 chr9 19555260 19555449 + 2 NA intron (NM_020344, intron 6 of 9) L4_A_Mam|LINE|RTE-X 146345 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 257-85 chr12 18374417 18374662 + 2 NA intron (NM_001288774, intron 13 of 32) MIR3|SINE|MIR 112999 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 344-5 chr1 27082259 27082480 + 2 NA Intergenic AluSc5|SINE|Alu -69519 NM_052943 115572 Hs.632378 NM_052943 ENSG00000158246 TENT5B FAM46B terminal nucleotidyltransferase 5B protein-coding 317-526 chr9 37006294 37006467 + 2 NA intron (NM_001280548, intron 4 of 8) intron (NM_001280548, intron 4 of 8) 27888 NR_104000 5079 Hs.654464 NM_016734 ENSG00000196092 PAX5 ALL3|BSAP paired box 5 protein-coding 451-228 chr8 51629569 51629969 + 2 NA intron (NM_144651, intron 2 of 22) L1MB4|LINE|L1 179676 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 689-59 chr21 20080026 20080627 + 2 NA Intergenic Intergenic 178359 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 449-64 chr12 129399802 129400133 + 2 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 191366 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 292-56 chr10 90442012 90442221 + 2 NA intron (NR_110657, intron 3 of 6) L1MA4A|LINE|L1 98689 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 302-161 chr16 82457121 82457286 + 2 NA Intergenic L1ME3|LINE|L1 -169766 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 310-19 chr1 165430821 165430996 + 2 NA intron (NM_001256570, intron 1 of 10) L2c|LINE|L2 -5924 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 300-226 chr2 233007572 233007790 + 2 NA intron (NM_019850, intron 1 of 14) intron (NM_019850, intron 1 of 14) -4933 NR_136325 101928881 Hs.570311 NR_136325 ENSG00000222001 LOC101928881 - uncharacterized LOC101928881 ncRNA 309-39 chr10 15953975 15954213 + 2 NA Intergenic Intergenic -93561 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 529-170 chr5 25583410 25583747 + 2 NA Intergenic L1PB2|LINE|L1 392625 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 464-196 chr5 23162753 23163056 + 2 NA Intergenic Intergenic -309560 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 478-28 chr10 77656690 77657033 + 2 NA Intergenic LTR39|LTR|ERV1 -19053 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 205-208 chr4 122364499 122364651 + 2 NA Intergenic MER5C|DNA|hAT-Charlie -14436 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 287-268 chr3 169759332 169759512 + 2 NA Intergenic Intergenic 5638 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 520-63 chr12 14260340 14260660 + 2 NA Intergenic Intergenic -105132 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 270-330 chr6 40485407 40485611 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 101855 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 468-225 chr4 76558357 76558800 + 2 NA intron (NM_020859, intron 2 of 10) MamRep605|LTR?|LTR? -14990 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 297-250 chr2 226436286 226436518 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 222391 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 310-46 chr10 72973983 72974238 + 2 NA Intergenic L1MA5A|LINE|L1 -19304 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 307-493 chr8 130710110 130710367 + 2 NA Intergenic LTR67B|LTR|ERVL -266564 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 382-179 chr2 34583029 34583368 + 2 NA Intergenic L1PB3|LINE|L1 -94359 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 476-256 chr8 14220220 14220663 + 2 NA intron (NM_139167, intron 4 of 7) L1ME3A|LINE|L1 590751 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 160-83 chr5 6022041 6022131 + 2 NA Intergenic Intergenic 315206 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 331-120 chr12 61674126 61674360 + 2 NA Intergenic Intergenic 518596 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 333-357 chr3 94349415 94349727 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 286510 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 233-135 chr18 4486581 4486800 + 2 NA Intergenic Intergenic -31383 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 349-91 chr11 2660007 2660206 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 39892 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 237-161 chr2 5136280 5136504 + 2 NA Intergenic Intergenic -480170 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 293-379 chr6 120817096 120817264 + 2 NA Intergenic Intergenic 517300 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 326-569 chr9 35206412 35206582 + 2 NA intron (NM_006377, intron 1 of 38) L1MB5|LINE|L1 44488 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 364-78 chr10 128708787 128709115 + 2 NA Intergenic Intergenic -203882 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 297-374 chr5 82875595 82875783 + 2 NA Intergenic L1MA4A|LINE|L1 -15853 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 445-16 chr10 5543960 5544221 + 2 NA Intergenic L1MB8|LINE|L1 -17844 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 259-220 chr2 185577396 185577617 + 2 NA Intergenic L1MA7|LINE|L1 161213 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 311-50 chr10 39348569 39348758 + 2 NA Intergenic L1PA4|LINE|L1 652067 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 197-132 chr3 54648712 54648858 + 2 NA intron (NM_018398, intron 11 of 37) MSTB1|LTR|ERVL-MaLR -8928 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 397-296 chr7 14749053 14749410 + 2 NA intron (NM_001350724, intron 3 of 24) intron (NM_001350724, intron 3 of 24) 92219 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 724-8 chr11 28530796 28531343 + 2 NA Intergenic Intergenic -53521 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 492-222 chr5 153273140 153273472 + 2 NA Intergenic Intergenic -217218 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 431-61 chr12 5314259 5314533 + 2 NA Intergenic L1M4|LINE|L1 -71245 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 425-227 chr5 30601307 30601590 + 2 NA Intergenic Intergenic -592238 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 397-157 chr2 80931024 80931228 + 2 NA Intergenic L1MB5|LINE|L1 535820 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 352-319 chr3 67833139 67833316 + 2 NA intron (NR_109992, intron 3 of 6) Tigger3c|DNA|TcMar-Tigger -158365 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 139-6 chr10 48266372 48266487 + 2 NA intron (NM_001018071, intron 1 of 28) intron (NM_001018071, intron 1 of 28) 8267 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 368-487 chr9 107762899 107763214 + 2 NA Intergenic MIRb|SINE|MIR -273287 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 394-132 chr17 34093115 34093427 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 63535 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 379-281 chr5 169230264 169230625 + 2 NA intron (NM_003062, intron 3 of 35) intron (NM_003062, intron 3 of 35) 33250 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 482-267 chr8 74088018 74088345 + 2 NA Intergenic Intergenic 96789 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 280-25 chr1 177067815 177067981 + 2 NA intron (NM_207108, intron 1 of 21) intron (NM_207108, intron 1 of 21) -38453 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 281-405 chr7 3778842 3779028 + 2 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -350750 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 135-44 chr22 33081761 33081856 + 2 NA Intergenic Intergenic -23427 NM_001135774 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 318-537 chr8 69302705 69302891 + 2 NA Intergenic Intergenic 145446 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 310-197 chr18 9035327 9035503 + 2 NA Intergenic L1ME2|LINE|L1 -67284 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 359-164 chr16 7546627 7546966 + 2 NA intron (NM_145893, intron 2 of 13) L1ME3Cz|LINE|L1 213951 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 349-525 chrX 43085409 43085606 + 2 NA Intergenic LTR1|LTR|ERV1 -91487 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 278-203 chr2 35515907 35516085 + 2 NA Intergenic Intergenic 44591 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 520-194 chr3 132270081 132270502 + 2 NA Intergenic AluSz6|SINE|Alu -47116 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 221-108 chr17 33022308 33022492 + 2 NA intron (NM_183377, intron 6 of 9) MER3|DNA|hAT-Charlie 29549 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 534-177 chr4 60770004 60770375 + 2 NA Intergenic L1MA3|LINE|L1 -152430 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 272-66 chr10 121197778 121197924 + 2 NA Intergenic Intergenic 333463 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 338-432 chr5 55085269 55085456 + 2 NA Intergenic HERV9N-int|LTR|ERV1 -17284 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 278-22 chr1 222527035 222527222 + 2 NA intron (NM_024746, intron 6 of 8) intron (NM_024746, intron 6 of 8) 20976 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 263-315 chr5 21084271 21084470 + 2 NA Intergenic Intergenic -375110 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 289-191 chr18 55618264 55618485 + 2 NA intron (NM_001243226, intron 2 of 20) L1MB1|LINE|L1 17583 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 352-80 chr11 58556721 58557058 + 2 NA intron (NM_001307951, intron 2 of 7) L1MA9|LINE|L1 19028 NM_004811 9404 Hs.125474 NM_004811 ENSG00000110031 LPXN LDPL leupaxin protein-coding 538-228 chr8 50117024 50117413 + 2 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -46913 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 518-132 chr2 76022525 76022833 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -311764 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 272-21 chr1 177177405 177177652 + 2 NA intron (NM_021165, intron 1 of 7) MIRc|SINE|MIR 6570 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 480-83 chr14 78792530 78792974 + 2 NA intron (NR_073547, intron 8 of 20) HAL1b|LINE|L1 389033 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 281-140 chr15 100477542 100477715 + 2 NA intron (NM_001290341, intron 9 of 13) intron (NM_001290341, intron 9 of 13) 66658 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 512-281 chr8 128030160 128030494 + 2 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) -18825 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 255-259 chr3 75988848 75989026 + 2 NA Intergenic Intergenic -203388 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 136-46 chr2 182591237 182591367 + 2 NA Intergenic LTR82B|LTR|ERVL -68457 NM_001258312 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 225-74 chr12 96800244 96800399 + 2 NA intron (NM_001306084, intron 63 of 67) intron (NM_001306084, intron 63 of 67) -106936 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 298-407 chr6 104185382 104185546 + 2 NA Intergenic L1PBb|LINE|L1 674082 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 321-64 chr10 60638337 60638552 + 2 NA intron (NM_001204403, intron 1 of 43) L1MEc|LINE|L1 -65488 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 558-57 chr14 82301166 82301559 + 2 NA Intergenic L1MC1|LINE|L1 -341270 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 340-356 chr3 25963460 25963675 + 2 NA Intergenic Intergenic -89872 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 320-382 chr4 36376297 36376512 + 2 NA Intergenic MER65A|LTR|ERV1 50024 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 344-174 chr16 59892598 59892884 + 2 NA intron (NR_110917, intron 1 of 3) AluSc8|SINE|Alu 37388 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 274-250 chr22 34909007 34909245 + 2 NA intron (NR_138042, intron 1 of 4) MLT1B|LTR|ERVL-MaLR 88790 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 200-192 chr4 89033282 89033450 + 2 NA intron (NM_014883, intron 1 of 23) MIR|SINE|MIR 23819 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 526-115 chr2 22043206 22043588 + 2 NA Intergenic Intergenic -332745 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 290-345 chr5 63524857 63525076 + 2 NA Intergenic Intergenic 437326 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 368-418 chr7 36712072 36712264 + 2 NA intron (NM_001637, intron 1 of 20) intron (NM_001637, intron 1 of 20) 12326 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 233-150 chr19 55984155 55984292 + 2 NA intron (NM_001317000, intron 9 of 9) L1M5|LINE|L1 -15503 NM_153447 126206 Hs.356872 NM_153447 ENSG00000171487 NLRP5 CLR19.8|MATER|NALP5|PAN11|PYPAF8 NLR family pyrin domain containing 5 protein-coding 247-289 chr4 36594798 36594997 + 2 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 47003 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 292-367 chr5 165696128 165696356 + 2 NA Intergenic L1PA11|LINE|L1 1225963 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 316-580 chr9 38167636 38167839 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie -98510 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 440-234 chr7 39302303 39302682 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 26642 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 385-70 chr12 99136459 99136716 + 2 NA intron (NM_152788, intron 15 of 25) HAL1ME|LINE|L1 18179 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 223-264 chr5 6018131 6018281 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 319086 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 438-244 chr6 123680691 123680961 + 2 NA Intergenic Intergenic -43733 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 458-13 chr1 232894220 232894575 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -56214 NR_138026 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 385-405 chr9 72176404 72176654 + 2 NA intron (NM_001351571, intron 1 of 13) L3|LINE|CR1 27089 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 452-160 chr22 25549547 25549788 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -15008 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 238-354 chr7 30310722 30310846 + 2 NA intron (NM_147128, intron 1 of 4) LTR32|LTR|ERVL -20894 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 414-117 chr17 53403985 53404268 + 2 NA Intergenic Intergenic 418621 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 292-94 chr12 21054398 21054660 + 2 NA exon (NM_001009562, exon 10 of 13) exon (NM_001009562, exon 10 of 13) 38833 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 683-69 chr5 133963105 133963649 + 2 NA intron (NM_020199, intron 1 of 2) L2a|LINE|L2 5248 NM_020199 56951 Hs.744034 NM_020199 ENSG00000113583 C5orf15 HTGN29|KCT2 chromosome 5 open reading frame 15 protein-coding 245-130 chr14 73926211 73926392 + 2 NA intron (NM_001242924, intron 13 of 13) L1MC5a|LINE|L1 -23633 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 312-553 chr9 135635203 135635420 + 2 NA intron (NM_182974, intron 2 of 4) L1MC3|LINE|L1 4229 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 637-101 chr6 54151781 54152378 + 2 NA intron (NM_001281746, intron 5 of 11) intron (NM_001281746, intron 5 of 11) 40636 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 260-390 chr6 157137255 157137454 + 2 NA intron (NM_020732, intron 8 of 19) MamRep434|DNA|TcMar-Tigger 100927 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 547-160 chr4 74017013 74017452 + 2 NA Intergenic L2a|LINE|L2 -18555 NM_002994 6374 Hs.89714 NM_002994 ENSG00000163735 CXCL5 ENA-78|SCYB5 C-X-C motif chemokine ligand 5 protein-coding 318-457 chr5 130230536 130230780 + 2 NA Intergenic Intergenic 326193 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 264-430 chr8 130454566 130454763 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -10990 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 233-282 chr5 9844171 9844397 + 2 NA intron (NR_027112, intron 4 of 12) L2c|LINE|L2 -10093 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 377-210 chr2 112975643 112975881 + 2 NA Intergenic Intergenic -2244 NM_001278568 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 527-262 chr8 75917267 75917667 + 2 NA Intergenic L1MA4A|LINE|L1 377499 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 327-92 chr11 76619030 76619294 + 2 NA Intergenic L1M4|LINE|L1 50776 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 322-500 chr7 87670372 87670600 + 2 NA intron (NM_001134406, intron 2 of 9) L1PREC2|LINE|L1 42088 NM_138290 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 532-40 chr12 16107122 16107504 + 2 NA Intergenic Intergenic 170372 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 404-174 chr2 138137709 138137940 + 2 NA Intergenic L2a|LINE|L2 35940 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 214-143 chr18 61814437 61814580 + 2 NA 3' UTR (NM_173557, exon 2 of 2) 3' UTR (NM_173557, exon 2 of 2) 66332 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 150-12 chr10 57504396 57504498 + 2 NA Intergenic MIR3|SINE|MIR -199888 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 355-462 chr7 49644108 49644370 + 2 NA Intergenic (ATCA)n|Simple_repeat|Simple_repeat -129399 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 837-22 chr2 218076579 218077281 + 2 NA intron (NR_034176, intron 11 of 13) intron (NR_034176, intron 11 of 13) 7915 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 372-106 chr12 24650467 24650711 + 2 NA Intergenic L2|LINE|L2 -66421 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 378-176 chr17 70963937 70964145 + 2 NA Intergenic L1MD|LINE|L1 238138 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 317-227 chr2 63393710 63394009 + 2 NA intron (NR_148704, intron 11 of 18) L1PA15|LINE|L1 44148 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 336-325 chr20 43392611 43392902 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -65140 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 319-47 chr10 29719635 29719850 + 2 NA intron (NM_001323599, intron 1 of 38) L1MEc|LINE|L1 16059 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 555-163 chr5 101497401 101497781 + 2 NA Intergenic MIR|SINE|MIR -594309 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 224-28 chr10 16239541 16239707 + 2 NA Intergenic Intergenic -197319 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 358-360 chr5 25083834 25084100 + 2 NA Intergenic Intergenic 106689 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 400-148 chr2 5106540 5106798 + 2 NA Intergenic L1PA16|LINE|L1 -450447 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 348-220 chr2 48539735 48539976 + 2 NA intron (NM_001198595, intron 2 of 4) intron (NM_001198595, intron 2 of 4) 9686 NM_001198595 11037 Hs.44385 NM_006873 ENSG00000243244 STON1 SALF|SBLF|STN1|STNB1 stonin 1 protein-coding 671-56 chr22 32915652 32916241 + 2 NA intron (NM_003490, intron 4 of 13) MLT1G|LTR|ERVL-MaLR 90875 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 772-63 chrX 80241283 80241903 + 2 NA intron (NR_110646, intron 5 of 5) MER49|LTR|ERV1 93725 NR_110646 101060146 Hs.546064 NR_110646 ENSG00000278530 CHMP1B2P - charged multivesicular body protein 1B2, pseudogene pseudo 506-280 chr8 74655690 74656165 + 2 NA intron (NR_033830, intron 2 of 5) THE1A-int|LTR|ERVL-MaLR -49766 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 260-436 chr8 89300306 89300492 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 457312 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 346-494 chr8 112075514 112075741 + 2 NA Intergenic L1PB3|LINE|L1 -567866 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 475-92 chr16 17942748 17943214 + 2 NA Intergenic MIR|SINE|MIR 389681 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 248-81 chr12 30172016 30172203 + 2 NA Intergenic HERV16-int|LTR|ERVL -387350 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 481-231 chr4 121043529 121043979 + 2 NA intron (NM_024574, intron 2 of 3) intron (NM_024574, intron 2 of 3) 28781 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 246-39 chr10 43891102 43891279 + 2 NA intron (NR_038268, intron 4 of 4) MER8|DNA|TcMar-Tigger -18106 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 354-383 chr5 141380109 141380355 + 2 NA intron (NM_018919, intron 1 of 3) intron (NM_018919, intron 1 of 3) -2510 NM_032087 56108 Hs.368160 NM_018920 ENSG00000253537 PCDHGA7 PCDH-GAMMA-A7 protocadherin gamma subfamily A, 7 protein-coding 127-82 chr9 69898773 69898845 + 2 NA intron (NM_001010940, intron 5 of 5) intron (NM_001010940, intron 5 of 5) 77992 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 277-282 chr4 43409631 43409848 + 2 NA Intergenic L1MA4|LINE|L1 82804 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 141-79 chr7 38584770 38584883 + 2 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 46547 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 306-52 chr10 31625014 31625222 + 2 NA Intergenic HAL1ME|LINE|L1 -225363 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 639-111 chr7 107078930 107079463 + 2 NA intron (NM_002736, intron 2 of 10) MER5C1|DNA|hAT-Charlie 34491 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 572-11 chr1 206984749 206985270 + 2 NA Intergenic L2b|LINE|L2 -14384 NM_032029 83953 Hs.145519 NM_032029 ENSG00000162897 FCAMR CD351|FCA/MR|FKSG87 Fc fragment of IgA and IgM receptor protein-coding 233-400 chr9 81205023 81205198 + 2 NA Intergenic Intergenic 484425 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 231-146 chr19 10042160 10042314 + 2 NA intron (NR_027300, intron 2 of 29) intron (NR_027300, intron 2 of 29) 881 NR_027300 388503 Hs.655363 NM_001013640 ENSG00000167798 C3P1 CPLP complement component 3 precursor pseudogene pseudo 223-339 chr8 58992758 58992891 + 2 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 126323 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 592-101 chr21 27728260 27728786 + 2 NA intron (NR_024357, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger 6144 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 377-344 chr6 56045069 56045415 + 2 NA Intergenic L1ME2|LINE|L1 46420 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 676-46 chr18 4659989 4660500 + 2 NA Intergenic L1MB7|LINE|L1 -204937 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 225-366 chr8 116429939 116430075 + 2 NA Intergenic LTR89|LTR|ERVL? -104948 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 179-2 chr1 237025507 237025641 + 2 NA Intergenic L1MEc|LINE|L1 -16610 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 208-156 chr22 30977850 30978017 + 2 NA non-coding (NR_152867, exon 4 of 4) non-coding (NR_152867, exon 4 of 4) 8722 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 392-59 chr12 29804562 29804918 + 2 NA Intergenic L1M2|LINE|L1 -19981 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 218-19 chr1 246149940 246150098 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 267393 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 312-54 chr10 91238122 91238413 + 2 NA intron (NM_001256549, intron 2 of 9) intron (NM_001256549, intron 2 of 9) 17604 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 355-522 chr8 138995418 138995638 + 2 NA Intergenic Intergenic -81487 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 192-167 chr5 114928468 114928575 + 2 NA Intergenic Intergenic -155108 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 244-47 chr11 31814315 31814539 + 2 NA intron (NR_160917, intron 1 of 11) intron (NR_160917, intron 1 of 11) -1707 NM_001368890 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 234-169 chr2 64198517 64198710 + 2 NA intron (NR_033837, intron 3 of 5) intron (NR_033837, intron 3 of 5) 6872 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 262-249 chr20 36677877 36678056 + 2 NA intron (NM_032013, intron 8 of 15) intron (NM_032013, intron 8 of 15) -31770 NM_175077 84174 Hs.713578 NM_032214 ENSG00000101082 SLA2 C20orf156|MARS|SLAP-2|SLAP2 Src like adaptor 2 protein-coding 316-184 chr15 57107178 57107490 + 2 NA intron (NM_207038, intron 5 of 19) L1MC1|LINE|L1 -112096 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 360-269 chr20 53285193 53285454 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 100040 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 344-485 chr8 50300326 50300515 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 136289 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 317-170 chr15 83481736 83482008 + 2 NA intron (NM_003027, intron 1 of 8) intron (NM_003027, intron 1 of 8) -8742 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 498-77 chr14 33376224 33376536 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -332557 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 573-194 chr8 69729525 69729952 + 2 NA intron (NM_001146009, intron 3 of 7) intron (NM_001146009, intron 3 of 7) 103431 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 468-104 chr16 82315507 82315950 + 2 NA Intergenic L2c|LINE|L2 -145504 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 225 chr1 13896237 13896382 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 146894 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 691-22 chr14 42610478 42610946 + 2 NA Intergenic Intergenic 1003856 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 210-169 chr3 31059291 31059435 + 2 NA Intergenic L1MD2|LINE|L1 102424 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 608-22 chr11 76105852 76106285 + 2 NA intron (NM_003369, intron 13 of 14) L1ME1|LINE|L1 100434 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 403-311 chr8 120504843 120505138 + 2 NA intron (NM_022045, intron 15 of 21) HAL1ME|LINE|L1 59571 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 283-362 chr5 62170985 62171245 + 2 NA Intergenic L1PA8|LINE|L1 -135047 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 493-75 chr14 26064617 26064916 + 2 NA Intergenic Intergenic 488664 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 470-102 chr18 13782442 13782795 + 2 NA Intergenic L1MB7|LINE|L1 -41531 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 457-102 chr19 29631862 29632172 + 2 NA Intergenic Intergenic 25734 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 207-78 chr14 46963029 46963212 + 2 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) -311339 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 370-125 chr12 133109950 133110148 + 2 NA Intergenic AluYh3|SINE|Alu 20424 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 301-381 chr5 163652905 163653091 + 2 NA Intergenic L1MB7|LINE|L1 147379 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 1038-7 chr14 87731659 87732231 + 2 NA Intergenic Intergenic -76651 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 365-328 chr5 107919905 107920185 + 2 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -249108 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 254-198 chr2 144671476 144671614 + 2 NA intron (NR_033870, intron 1 of 4) MLT1F2|LTR|ERVL-MaLR 3578 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 260-213 chr2 112262734 112262916 + 2 NA Intergenic AluJr|SINE|Alu -7783 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 372-489 chr8 114818904 114819262 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 848930 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 631-11 chr1 177154085 177154647 + 2 NA intron (NM_207108, intron 1 of 21) MER3|DNA|hAT-Charlie 10346 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 195-201 chr5 123804347 123804494 + 2 NA Intergenic Intergenic 259003 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 324-553 chr8 135312832 135313099 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 78834 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 423-49 chr11 66411377 66411728 + 2 NA Intergenic Intergenic -9452 NM_001318804 266743 Hs.256036 NM_178864 ENSG00000174576 NPAS4 Le-PAS|NXF|PASD10|bHLHe79 neuronal PAS domain protein 4 protein-coding 671-34 chr14 101170214 101170556 + 2 NA Intergenic Intergenic 49529 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 175-169 chr8 108557622 108557767 + 2 NA Intergenic Intergenic 114070 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 472-207 chr3 97858164 97858592 + 2 NA intron (NM_153605, intron 2 of 21) L1M2|LINE|L1 36367 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 226-387 chr9 106170856 106171035 + 2 NA Intergenic L1MC4|LINE|L1 -429983 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 223-304 chr6 119664546 119664701 + 2 NA intron (NR_134600, intron 2 of 3) (ATATTT)n|Simple_repeat|Simple_repeat 114815 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 418-254 chr7 19237271 19237506 + 2 NA Intergenic L1PBa|LINE|L1 -91967 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 405-180 chr20 41778329 41778555 + 2 NA Intergenic Intergenic -160065 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 312-426 chr5 107956918 107957095 + 2 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -286069 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 207-186 chr3 36966153 36966290 + 2 NA Intergenic L1M5|LINE|L1 -21167 NM_001329998 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 224-149 chr2 104512466 104512637 + 2 NA non-coding (NR_015399, exon 4 of 4) non-coding (NR_015399, exon 4 of 4) -2042 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 470-160 chr20 54834510 54834747 + 2 NA Intergenic Intergenic 359035 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 337-193 chr16 46532113 46532316 + 2 NA intron (NR_026556, intron 6 of 16) MER21B|LTR|ERVL 36883 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 252-32 chr10 17517987 17518211 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -63504 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 238-405 chr8 139381204 139381391 + 2 NA Intergenic Intergenic 321826 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 353-192 chr17 71028195 71028394 + 2 NA Intergenic Intergenic 173885 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 747-52 chr5 35253432 35254095 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -23276 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 202-112 chr2 27037376 27037530 + 2 NA intron (NM_001083590, intron 7 of 15) intron (NM_001083590, intron 7 of 15) 4488 NM_001083590 54867 Hs.533934 NM_017727 ENSG00000119777 TMEM214 - transmembrane protein 214 protein-coding 404-281 chr6 161959455 161959805 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 488653 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 402-354 chr8 128991223 128991434 + 2 NA Intergenic Intergenic -25327 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 231-375 chr9 26777026 26777189 + 2 NA Intergenic Intergenic 115695 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 486-248 chr5 138608675 138609022 + 2 NA Intergenic AluJr4|SINE|Alu -33447 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 531-14 chr1 222064803 222065146 + 2 NA Intergenic LOR1a|LTR|ERV1 -86454 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 491-6 chr1 113566798 113567178 + 2 NA intron (NM_001142782, intron 2 of 20) L1ME3B|LINE|L1 176473 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 705-98 chr8 55627479 55628050 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -106786 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 211-214 chr4 100533742 100533881 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -15789 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 309-192 chr16 65463882 65464110 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 112304 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 398-110 chr14 78500186 78500493 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 96620 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 293-350 chr5 118255403 118255666 + 2 NA intron (NR_104997, intron 2 of 2) AluSx4|SINE|Alu -27040 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 306-484 chr7 97548907 97549198 + 2 NA Intergenic Intergenic -183034 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 340-160 chr14 86410528 86410701 + 2 NA Intergenic Intergenic 475936 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 311-153 chr15 25274975 25275136 + 2 NA intron (NR_146177, intron 144 of 147) L1M1|LINE|L1 -3288 NR_001289 338429 NR_001289 ENSG00000239169 SNORD109B HBII-438B small nucleolar RNA, C/D box 109B snoRNA 346-45 chr10 36601406 36601593 + 2 NA Intergenic Intergenic -524358 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 151-79 chr7 62917920 62918034 + 2 NA Intergenic ALR/Alpha|Satellite|centr 386079 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 204-176 chr21 28333858 28333980 + 2 NA Intergenic Intergenic -105252 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 380-423 chr9 94246442 94246750 + 2 NA intron (NR_160773, intron 1 of 2) L1MDa|LINE|L1 -12670 NM_003448 169841 Hs.387623 NM_003448 ENSG00000175787 ZNF169 - zinc finger protein 169 protein-coding 586-70 chr2 40594103 40594500 + 2 NA Intergenic Intergenic -81866 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 158-38 chr16 47825764 47825848 + 2 NA Intergenic Intergenic -32775 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 261-392 chr8 132300958 132301203 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 146182 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 127-6 chr1 117993341 117993430 + 2 NA intron (NM_206996, intron 35 of 48) intron (NM_206996, intron 35 of 48) 63646 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 449-118 chr2 49756695 49757131 + 2 NA Intergenic Intergenic 217290 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 329-311 chr2 219682489 219682796 + 2 NA Intergenic Intergenic 55012 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 230-162 chr2 14765122 14765284 + 2 NA Intergenic Intergenic 132486 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 280-249 chr3 23503014 23503226 + 2 NA intron (NM_001370225, intron 4 of 5) intron (NM_001370225, intron 4 of 5) 299793 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 367-40 chr10 11089119 11089432 + 2 NA intron (NR_046108, intron 4 of 6) intron (NR_046108, intron 4 of 6) 16213 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 263-426 chr8 113839279 113839476 + 2 NA Intergenic Intergenic -402438 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 321-117 chr11 132084949 132085122 + 2 NA intron (NR_147849, intron 2 of 6) MER41-int|LTR|ERV1 174217 NM_001144059 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 806-15 chr14 45717341 45717934 + 2 NA Intergenic L2c|LINE|L2 -2035 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 120-49 chr8 55459769 55459858 + 2 NA intron (NM_052898, intron 2 of 2) L1ME1|LINE|L1 -4492 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 450-326 chr9 98463253 98463555 + 2 NA intron (NM_005458, intron 6 of 18) L1ME3|LINE|L1 -207755 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 215-159 chr2 177832354 177832541 + 2 NA intron (NM_001077197, intron 7 of 20) MLT2A2|LTR|ERVL 56309 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 219-179 chr2 129737108 129737312 + 2 NA Intergenic Intergenic 140281 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 442-224 chr5 13726371 13726742 + 2 NA intron (NM_001369, intron 70 of 78) intron (NM_001369, intron 70 of 78) 217924 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 293-125 chr14 87487000 87487252 + 2 NA Intergenic Intergenic 168168 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 392-323 chr8 86942279 86942542 + 2 NA intron (NM_173538, intron 4 of 10) MLT1E3|LTR|ERVL-MaLR 75995 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 336-534 chr8 33029729 33029970 + 2 NA Intergenic L1MA5|LINE|L1 308014 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 288-103 chr13 99594371 99594537 + 2 NA Intergenic Intergenic -12210 NM_206808 171425 Hs.655642 NM_206808 ENSG00000125246 CLYBL CLB citrate lyase beta like protein-coding 319-521 chr8 43771543 43771744 + 2 NA Intergenic ALR/Alpha|Satellite|centr 479201 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 289-211 chr2 22442022 22442268 + 2 NA Intergenic Intergenic -94334 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 311-213 chr18 37964587 37964842 + 2 NA Intergenic Intergenic 307579 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 244-383 chr9 24884085 24884283 + 2 NA Intergenic L1PA4|LINE|L1 -338287 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 582-141 chr7 21326234 21326776 + 2 NA Intergenic Intergenic -101578 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 497-196 chr4 35458890 35459206 + 2 NA Intergenic L1M1|LINE|L1 784891 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 797-21 chr19 33531894 33532328 + 2 NA Intergenic AluYj4|SINE|Alu -10320 NM_001166056 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 331-107 chr12 11567820 11568115 + 2 NA Intergenic L1PB4|LINE|L1 19937 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 353-86 chr11 74868287 74868621 + 2 NA intron (NM_001270381, intron 8 of 15) L1PA14|LINE|L1 80637 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 321-89 chr11 13699448 13699680 + 2 NA intron (NM_032228, intron 2 of 11) intron (NM_032228, intron 2 of 11) 30896 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 296-144 chr14 67099727 67099979 + 2 NA intron (NM_001024218, intron 11 of 21) A-rich|Low_complexity|Low_complexity -89587 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 300-27 chr1 221701203 221701435 + 2 NA TTS (NR_111939) TTS (NR_111939) 35581 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 580-101 chr20 59328775 59329223 + 2 NA Intergenic L1MC5a|LINE|L1 28388 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 281-311 chr4 43345946 43346201 + 2 NA Intergenic Intergenic 146470 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 234-151 chr19 37016160 37016294 + 2 NA Intergenic SST1|Satellite|centr -61995 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 498-68 chr12 64616840 64617249 + 2 NA intron (NR_040718, intron 1 of 3) intron (NR_040718, intron 1 of 3) -5465 NR_030347 693129 NR_030347 ENSG00000207546 MIR548C MIRN548C microRNA 548c ncRNA 162-29 chr12 78658224 78658331 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -205705 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 212-134 chr19 28193771 28193949 + 2 NA Intergenic Intergenic -399920 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 368-132 chr13 100971954 100972210 + 2 NA intron (NR_047687, intron 2 of 7) L1M4|LINE|L1 -27718 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 434-173 chr3 4882126 4882504 + 2 NA Intergenic L1M4|LINE|L1 24186 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 173-114 chr5 148414590 148414719 + 2 NA intron (NM_001271723, intron 10 of 20) intron (NM_001271723, intron 10 of 20) 30696 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 391-129 chr16 77363715 77364047 + 2 NA exon (NM_001326358, exon 6 of 23) exon (NM_001326358, exon 6 of 23) 71153 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 253-376 chr7 23546003 23546225 + 2 NA Intergenic AluSx|SINE|Alu -14073 NM_001282758 29896 Hs.445652 NM_013293 ENSG00000164548 TRA2A AWMS1|HSU53209 transformer 2 alpha homolog protein-coding 240-149 chr15 46131610 46131804 + 2 NA Intergenic L1PA15|LINE|L1 426512 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 286-364 chr5 119513010 119513254 + 2 NA intron (NM_001199291, intron 17 of 24) intron (NM_001199291, intron 17 of 24) 60635 NM_001292028 3295 Hs.406861 NM_000414 ENSG00000133835 HSD17B4 DBP|MFE-2|MPF-2|PRLTS1|SDR8C1 hydroxysteroid 17-beta dehydrogenase 4 protein-coding 236-206 chr22 28376160 28376357 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -83611 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 541-256 chrX 21707306 21707683 + 2 NA intron (NM_014332, intron 4 of 4) intron (NM_014332, intron 4 of 4) -49164 NM_153270 257240 Hs.448572 NM_153270 ENSG00000185915 KLHL34 - kelch like family member 34 protein-coding 233-262 chr4 64511967 64512190 + 2 NA Intergenic L1MC1|LINE|L1 -102618 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 294-9 chr1 80206249 80206513 + 2 NA Intergenic AluSp|SINE|Alu -329374 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 208-118 chr2 66060829 66061002 + 2 NA Intergenic Intergenic 297413 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 407-306 chr7 92931970 92932206 + 2 NA Intergenic L1MA8|LINE|L1 -95461 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 562-145 chr3 99107692 99108110 + 2 NA Intergenic Intergenic -206206 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 352-489 chr7 29168715 29169006 + 2 NA intron (NM_001293069, intron 2 of 13) intron (NM_001293069, intron 2 of 13) 21197 NM_001371267 354-242 chr2 190134320 190134527 + 2 NA Intergenic Intergenic -3354 NM_001042521 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 481-18 chr1 240893943 240894264 + 2 NA intron (NM_001282773, intron 4 of 15) L1MEd|LINE|L1 -238169 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 348-127 chr13 100852624 100852842 + 2 NA intron (NR_047687, intron 2 of 7) L1ME4a|LINE|L1 91631 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 277-357 chr6 128752741 128752989 + 2 NA Intergenic Intergenic -130273 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 213-251 chr6 63254092 63254250 + 2 NA Intergenic Intergenic 65806 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 546-161 chr4 22980443 22980871 + 2 NA Intergenic L1PBb|LINE|L1 266568 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 515-17 chr1 239221345 239221751 + 2 NA Intergenic L1M4|LINE|L1 -165020 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 579-100 chr3 39525221 39525644 + 2 NA non-coding (NR_103504, exon 7 of 7) non-coding (NR_103504, exon 7 of 7) 23366 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 407-250 chr5 73185369 73185718 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 12350 NM_153217 134288 Hs.508588 NM_153217 ENSG00000164325 TMEM174 - transmembrane protein 174 protein-coding 461-211 chr5 38733524 38733941 + 2 NA intron (NR_109951, intron 3 of 3) intron (NR_109951, intron 3 of 3) -13459 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 365-81 chr11 114526893 114527095 + 2 NA intron (NM_152315, intron 4 of 5) intron (NM_152315, intron 4 of 5) 32887 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 289-495 chr9 113035871 113036048 + 2 NA Intergenic L1MEf|LINE|L1 20765 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 197-20 chr10 11226167 11226327 + 2 NA intron (NM_001025076, intron 3 of 13) MIRb|SINE|MIR 61217 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 242-142 chr18 2037776 2037985 + 2 NA Intergenic Intergenic 533625 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 277-242 chr22 33089134 33089328 + 2 NA Intergenic Intergenic -19298 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 469-253 chr6 147812525 147812985 + 2 NA Intergenic Intergenic 304065 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 234-264 chr4 30192429 30192612 + 2 NA Intergenic Intergenic -527849 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 209-7 chr1 83070380 83070544 + 2 NA intron (NR_147074, intron 5 of 10) ERV3-16A3_I-int|LTR|ERVL -84254 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 310-293 chr20 48090060 48090263 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -100044 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 438-96 chr18 7856284 7856655 + 2 NA intron (NM_002845, intron 2 of 30) AluJo|SINE|Alu 289153 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 519-72 chr16 25899913 25900304 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -125129 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 304-217 chr18 77299166 77299452 + 2 NA Intergenic Intergenic 49461 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 306-434 chr6 66585417 66585692 + 2 NA Intergenic Intergenic 797675 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 203-9 chr1 82763271 82763410 + 2 NA Intergenic Intergenic -139843 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 229-321 chr5 148509758 148509984 + 2 NA exon (NM_199453, exon 5 of 7) exon (NM_199453, exon 5 of 7) 125913 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 371-57 chr10 118140224 118140593 + 2 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -93467 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 202-273 chr9 96761986 96762180 + 2 NA intron (NM_001314060, intron 4 of 4) L1PB1|LINE|L1 16004 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 141-41 chr2 146884241 146884329 + 2 NA Intergenic L1ME3A|LINE|L1 297228 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 396-159 chr2 50290399 50290652 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 57229 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 554-99 chr18 5154137 5154591 + 2 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 42893 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 324-407 chr4 153322232 153322509 + 2 NA intron (NM_001351057, intron 9 of 12) AluSx3|SINE|Alu -13559 NR_001562 303 Hs.546235 NR_001562 ANXA2P1 ANX2L1|ANX2P1|LPC2A annexin A2 pseudogene 1 pseudo 666-7 chr10 56202034 56202426 + 2 NA Intergenic L1PA5|LINE|L1 159029 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 251-72 chr12 89600114 89600315 + 2 NA intron (NM_001366528, intron 18 of 20) intron (NM_001366528, intron 18 of 20) -73952 NM_001199782 100528030 Hs.25130 NM_001199781 ENSG00000259075 POC1B-GALNT4 GALNT4|GalNAc-T4 POC1B-GALNT4 readthrough protein-coding 543-83 chr15 97039503 97039823 + 2 NA Intergenic L1ME1|LINE|L1 256228 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 386-117 chr15 69075759 69076026 + 2 NA Intergenic MIRb|SINE|MIR -4958 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 315-64 chr10 71911524 71911693 + 2 NA Intergenic LTR26C|LTR|ERV1 -52787 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 154-37 chr16 8331311 8331440 + 2 NA Intergenic Intergenic 258463 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 421-292 chr8 46042694 46043009 + 2 NA Intergenic Intergenic 574792 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 296-117 chr12 127977007 127977286 + 2 NA intron (NR_126452, intron 2 of 3) intron (NR_126452, intron 2 of 3) 6745 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 364-162 chr16 82319278 82319492 + 2 NA Intergenic MER34B|LTR|ERV1 -149161 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 241-313 chr5 131771196 131771346 + 2 NA intron (NM_133372, intron 1 of 17) intron (NM_133372, intron 1 of 17) 25746 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 479-138 chr3 77800291 77800646 + 2 NA Intergenic Intergenic 248495 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 400-77 chr12 133218712 133218967 + 2 NA 3' UTR (NM_001191054, exon 9 of 9) 3' UTR (NM_001191054, exon 9 of 9) 16997 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 578-142 chr5 104125441 104125861 + 2 NA Intergenic Intergenic -562862 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 356-77 chr11 30039041 30039248 + 2 NA Intergenic Intergenic -22114 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 321-377 chr3 82361568 82361882 + 2 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 375583 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 224-325 chr8 84105157 84105335 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -77541 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 252-20 chr1 174778402 174778561 + 2 NA intron (NM_001366451, intron 3 of 12) L1MEc|LINE|L1 -21257 NM_001366456 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 166-56 chr2 156300167 156300301 + 2 NA Intergenic Intergenic 32487 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 272-388 chr6 63165763 63165956 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 154118 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 342-500 chr7 104449459 104449688 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 120917 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 503-195 chr3 84982238 84982668 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 23464 NM_001167675 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 340-422 chr4 171084106 171084296 + 2 NA Intergenic L1MEc|LINE|L1 43599 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 273-92 chr11 131018713 131018896 + 2 NA Intergenic L1MDa|LINE|L1 -102317 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 567-33 chr11 76088707 76088994 + 2 NA intron (NM_003369, intron 13 of 14) L2c|LINE|L2 117652 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 339-354 chr3 35705634 35705864 + 2 NA intron (NM_016300, intron 9 of 19) MIRc|SINE|MIR 24809 NM_198399 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 328-133 chr13 86499828 86500092 + 2 NA Intergenic Intergenic -411960 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 576-177 chr8 135504682 135505043 + 2 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 47406 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 443-97 chr14 72627053 72627374 + 2 NA intron (NM_001280542, intron 9 of 10) L1MC4a|LINE|L1 110393 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 422-2 chr1 29659941 29660203 + 2 NA Intergenic L1MB3|LINE|L1 -309958 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 359-219 chr2 12786045 12786298 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 48804 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 148-84 chr7 11562135 11562245 + 2 NA intron (NM_015204, intron 4 of 26) intron (NM_015204, intron 4 of 26) 270008 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 207-172 chr21 38316321 38316493 + 2 NA Intergenic L1MEf|LINE|L1 29669 NR_110545 102724678 Hs.635675 NR_110545 LINC01423 - long intergenic non-protein coding RNA 1423 ncRNA 464-71 chr14 85127833 85128203 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -143914 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 254-59 chr11 76944039 76944232 + 2 NA intron (NM_001300955, intron 2 of 9) L1M2a1|LINE|L1 83217 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 406-24 chr1 218128831 218129190 + 2 NA Intergenic Intergenic 85505 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 287-190 chr2 34464648 34464810 + 2 NA Intergenic Intergenic -212828 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 310-530 chr8 117184931 117185148 + 2 NA Intergenic Intergenic 50044 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 409-172 chr20 22356430 22356645 + 2 NA Intergenic L1PA16|LINE|L1 64106 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 322-110 chr12 2235732 2235950 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -12360 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 465-270 chr7 33795409 33795822 + 2 NA Intergenic Intergenic -109300 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 334-213 chr17 73927763 73928024 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -99356 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 261-300 chr5 6657242 6657426 + 2 NA intron (NM_001047, intron 3 of 4) intron (NM_001047, intron 3 of 4) 23894 NM_001324323 6715 Hs.552 NM_001047 ENSG00000145545 SRD5A1 S5AR 1 steroid 5 alpha-reductase 1 protein-coding 201-13 chr1 173955593 173955733 + 2 NA intron (NM_001300852, intron 12 of 18) intron (NM_001300852, intron 12 of 18) 37409 NM_001300850 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 221-275 chr7 32918528 32918733 + 2 NA intron (NR_003500, intron 4 of 5) intron (NR_003500, intron 4 of 5) 24540 NR_003500 441212 Hs.648086 NM_001039754 ENSG00000205763 RP9P - RP9 pseudogene pseudo 267-142 chr17 9069955 9070142 + 2 NA intron (NM_004822, intron 2 of 6) intron (NM_004822, intron 2 of 6) 48538 NM_004822 9423 Hs.660885 NM_004822 ENSG00000065320 NTN1 MRMV4|NTN1L netrin 1 protein-coding 301-204 chr2 66878518 66878772 + 2 NA Intergenic Intergenic -25791 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 452-284 chr9 19357263 19357636 + 2 NA intron (NR_073201, intron 26 of 31) intron (NR_073201, intron 26 of 31) 22787 NM_001010 6194 Hs.408073 NM_001010 ENSG00000137154 RPS6 S6 ribosomal protein S6 protein-coding 589 chr1 72910761 72911072 + 2 NA Intergenic Intergenic -395254 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 252-464 chrX 86297145 86297373 + 2 NA intron (NM_001139515, intron 1 of 11) intron (NM_001139515, intron 1 of 11) 34291 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 348-57 chr10 61717073 61717347 + 2 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 54249 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 327-73 chr11 14494480 14494681 + 2 NA intron (NM_016451, intron 2 of 21) MIR3|SINE|MIR 5278 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 262-97 chr12 38611485 38611702 + 2 NA Intergenic Intergenic 293998 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 302-321 chr4 58098949 58099144 + 2 NA Intergenic Intergenic 437282 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 364-97 chr11 114193761 114194071 + 2 NA intron (NM_006006, intron 4 of 6) MIRc|SINE|MIR -101897 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 220-331 chr6 153697831 153697992 + 2 NA Intergenic Intergenic -312585 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 643-132 chr8 128194000 128194460 + 2 NA Intergenic L1PREC2|LINE|L1 44114 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 377-397 chr8 68808607 68808817 + 2 NA intron (NR_146187, intron 12 of 13) MER2|DNA|TcMar-Tigger 295478 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 557-5 chr1 59580991 59581322 + 2 NA intron (NM_001350794, intron 8 of 14) intron (NM_001350794, intron 8 of 14) 65526 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 399-329 chr9 79976734 79976991 + 2 NA intron (NR_121212, intron 2 of 4) intron (NR_121212, intron 2 of 4) 1839 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 392-225 chr4 35909612 35909874 + 2 NA Intergenic MIRb|SINE|MIR 334196 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 241-279 chr4 130228654 130228785 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -147642 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 332-93 chr11 59245770 59246019 + 2 NA Intergenic Intergenic -32967 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 437-5 chr1 52576542 52576853 + 2 NA Intergenic AluSx|SINE|Alu -23605 NM_001009881 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 313-481 chr6 141214165 141214401 + 2 NA Intergenic Intergenic 530469 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 410-343 chrX 88475395 88475670 + 2 NA Intergenic HAL1|LINE|L1 -271693 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 260-467 chrX 51991046 51991290 + 2 NA Intergenic L1M3|LINE|L1 72305 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 263-439 chr8 137800599 137800837 + 2 NA Intergenic Intergenic 282827 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 226-146 chr2 5331273 5331441 + 2 NA Intergenic L2c|LINE|L2 359761 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 345-552 chr9 30531898 30532190 + 2 NA Intergenic Intergenic -123590 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 318-71 chr10 75338725 75338969 + 2 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) 42464 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 356-134 chr13 93637545 93637810 + 2 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 220796 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 333-483 chr5 162720817 162721083 + 2 NA Intergenic Intergenic 653308 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 256-166 chr17 59116506 59116706 + 2 NA intron (NM_001100595, intron 2 of 2) L3|LINE|CR1 -9726 NM_001353083 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 251-103 chr14 86426041 86426236 + 2 NA Intergenic MIRb|SINE|MIR -479640 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 422-224 chr4 156278401 156278671 + 2 NA Intergenic L2|LINE|L2 -324670 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 355-65 chr10 97293221 97293529 + 2 NA promoter-TSS (NR_037909) promoter-TSS (NR_037909) -702 NR_037909 100533184 Hs.80305 NR_037909 ENSG00000269891 ARHGAP19-SLIT1 ARHGAP19 ARHGAP19-SLIT1 readthrough (NMD candidate) ncRNA 225-124 chr17 30421289 30421440 + 2 NA intron (NM_001304, intron 3 of 20) intron (NM_001304, intron 3 of 20) 40886 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 160-21 chr12 13409104 13409194 + 2 NA Intergenic Intergenic -32404 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 226-121 chr16 78394288 78394481 + 2 NA intron (NM_001291997, intron 5 of 7) intron (NM_001291997, intron 5 of 7) 294730 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 188-137 chr3 134372021 134372159 + 2 NA intron (NM_001278683, intron 1 of 9) intron (NM_001278683, intron 1 of 9) 2357 NM_016201 51421 Hs.426312 NM_016201 ENSG00000114019 AMOTL2 LCCP angiomotin like 2 protein-coding 913-7 chr12 2712183 2712756 + 2 NA Intergenic Intergenic -21312 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 548-172 chr4 162998351 162998748 + 2 NA Intergenic Intergenic 95079 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 255-374 chr6 164359935 164360122 + 2 NA Intergenic Intergenic 462035 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 282-447 chr8 79120871 79121046 + 2 NA Intergenic HERVIP10B3-int|LTR|ERV1 -211230 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 302-443 chr8 65020626 65020816 + 2 NA Intergenic L2a|LINE|L2 159619 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 275-348 chr7 118035007 118035262 + 2 NA Intergenic L2c|LINE|L2 -149030 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 437-11 chr1 164866551 164866896 + 2 NA intron (NM_001353131, intron 7 of 7) intron (NM_001353131, intron 7 of 7) -92082 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 247-264 chr3 89366912 89367095 + 2 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 259382 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 342-356 chr4 57926119 57926318 + 2 NA Intergenic (ATTAAT)n|Simple_repeat|Simple_repeat 500346 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 231-70 chr12 56061013 56061195 + 2 NA Intergenic L1MC5|LINE|L1 -18921 NM_001982 2065 Hs.118681 NM_001982 ENSG00000065361 ERBB3 ErbB-3|FERLK|HER3|LCCS2|MDA-BF-1|c-erbB-3|c-erbB3|erbB3-S|p180-ErbB3|p45-sErbB3|p85-sErbB3 erb-b2 receptor tyrosine kinase 3 protein-coding 378-378 chr6 81215758 81215993 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie 536806 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 474-117 chr18 37364163 37364613 + 2 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) 89928 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 230-224 chr3 7351546 7351708 + 2 NA intron (NM_000844, intron 4 of 9) MLT2B3|LTR|ERVL 183657 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 351-403 chr5 158403759 158403981 + 2 NA intron (NR_109888, intron 1 of 6) THE1B-int|LTR|ERVL-MaLR 5903 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 322-232 chr2 16500502 16500812 + 2 NA Intergenic L2a|LINE|L2 165177 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 222-379 chr8 129323247 129323453 + 2 NA Intergenic Intergenic -82110 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 267-367 chr6 49216584 49216765 + 2 NA Intergenic Intergenic 246579 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 313-170 chr15 86219055 86219270 + 2 NA intron (NM_152336, intron 5 of 24) intron (NM_152336, intron 5 of 24) 97806 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 334-190 chr16 25875094 25875330 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -150025 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 388-83 chr12 78239100 78239442 + 2 NA Intergenic L1MC4a|LINE|L1 120475 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 250-59 chr10 123828918 123829122 + 2 NA intron (NM_198148, intron 4 of 13) L1MD|LINE|L1 62787 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 335-141 chr13 64734563 64734877 + 2 NA Intergenic L1MC2|LINE|L1 -658709 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 640-87 chr3 189662156 189662601 + 2 NA intron (NM_003722, intron 1 of 13) L1PA16|LINE|L1 30989 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 470-55 chr12 79757122 79757423 + 2 NA Intergenic L1MCc|LINE|L1 -66175 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 241-386 chr8 21512553 21512706 + 2 NA Intergenic L2a|LINE|L2 214390 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 506-177 chr3 12309081 12309530 + 2 NA intron (NM_001354667, intron 1 of 6) L1M6|LINE|L1 -3075 NM_001330615 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 298-172 chr18 1989011 1989287 + 2 NA Intergenic Intergenic 582356 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 380-303 chr5 50992862 50993172 + 2 NA Intergenic Intergenic -22830 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 161-34 chr16 78690887 78691003 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 591291 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 425-236 chr5 96464672 96465048 + 2 NA intron (NR_130776, intron 4 of 4) L1M5|LINE|L1 -31612 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 410-31 chr10 33474285 33474516 + 2 NA Intergenic Intergenic -139495 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 895-6 chr12 34451549 34452204 + 2 NA Intergenic ALR/Alpha|Satellite|centr 429380 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 319-139 chr14 53796208 53796442 + 2 NA Intergenic Intergenic 152159 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 179-43 chr2 22545152 22545315 + 2 NA Intergenic L2a|LINE|L2 8754 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 430-236 chr5 20169305 20169689 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -136054 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 461-215 chr5 68508065 68508452 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 215681 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 242-9 chr1 87833262 87833460 + 2 NA Intergenic Intergenic -461706 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 300-366 chr5 103648106 103648306 + 2 NA Intergenic Intergenic -85417 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 316-296 chr2 165724203 165724361 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 69965 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 355-534 chr9 75677788 75678070 + 2 NA Intergenic L1MC1|LINE|L1 -212715 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 230-396 chr9 31067725 31067948 + 2 NA Intergenic Intergenic 313654 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 240-160 chr15 76776051 76776186 + 2 NA intron (NM_001353011, intron 9 of 32) L1MDa|LINE|L1 85826 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 268-305 chr5 23968024 23968220 + 2 NA intron (NR_131245, intron 1 of 4) intron (NR_131245, intron 1 of 4) 16774 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 169-3 chr1 78038031 78038156 + 2 NA Intergenic Intergenic -6877 NM_001304725 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 379-72 chr12 65480395 65480728 + 2 NA intron (NR_120431, intron 3 of 3) HAL1|LINE|L1 76750 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 350-16 chr1 115597149 115597379 + 2 NA Intergenic ERVL-int|LTR|ERVL -44706 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 458-235 chr7 41910040 41910447 + 2 NA Intergenic HAL1|LINE|L1 -207153 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 120-17 chr14 51317651 51317744 + 2 NA intron (NR_145423, intron 1 of 1) L1ME4a|LINE|L1 10688 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 333-478 chr5 145532836 145533163 + 2 NA Intergenic L1MA9|LINE|L1 302343 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 330-456 chr6 44565725 44565902 + 2 NA Intergenic AluJr|SINE|Alu -13932 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 340-274 chr2 116151258 116151466 + 2 NA Intergenic L1MA8|LINE|L1 807547 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 314-540 chr7 67505823 67506068 + 2 NA Intergenic Intergenic 169969 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 361-15 chr1 117425415 117425694 + 2 NA intron (NM_006699, intron 5 of 12) L1MC|LINE|L1 58105 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 315-20 chr1 100591090 100591263 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 53037 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 205-240 chr6 51343039 51343211 + 2 NA Intergenic Intergenic -278745 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 259-96 chr13 34878960 34879197 + 2 NA Intergenic Intergenic -63209 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 420-306 chr9 29748957 29749202 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -535478 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 329-561 chr8 17814435 17814676 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -12976 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 262-16 chr1 87631914 87632118 + 2 NA Intergenic L1MEd|LINE|L1 -260361 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 199-53 chr14 34778720 34778884 + 2 NA intron (NM_013448, intron 17 of 26) L1M5|LINE|L1 -63979 NR_028131 1073 Hs.180141 NM_021914 ENSG00000165410 CFL2 NEM7 cofilin 2 protein-coding 255-257 chr3 70011446 70011607 + 2 NA intron (NR_110000, intron 1 of 3) intron (NR_110000, intron 1 of 3) 11782 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 217-198 chr2 238663065 238663247 + 2 NA Intergenic L1M5|LINE|L1 -107657 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 134-87 chr8 86270934 86271040 + 2 NA Intergenic Intergenic -40606 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 171-4 chr1 48558059 48558204 + 2 NA intron (NM_001323575, intron 11 of 12) MIRb|SINE|MIR -85923 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 385-215 chr20 52058278 52058554 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 47068 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 328-568 chr8 91867312 91867566 + 2 NA Intergenic Intergenic 150241 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 335-202 chr17 68677490 68677766 + 2 NA non-coding (NR_110825, exon 5 of 5) non-coding (NR_110825, exon 5 of 5) 49474 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 554-153 chr3 195142575 195142980 + 2 NA intron (NM_152531, intron 3 of 3) intron (NM_152531, intron 3 of 3) -5094 NR_102710 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 212-255 chr5 53761205 53761357 + 2 NA Intergenic Intergenic 58401 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 378-36 chr1 209920385 209920677 + 2 NA Intergenic HAL1|LINE|L1 -17643 NM_001146261 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 607-140 chr7 113737938 113738305 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 180888 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 378-198 chr18 75302830 75303082 + 2 NA Intergenic MIRb|SINE|MIR 91427 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 337-558 chr8 127364887 127365156 + 2 NA intron (NR_117099, intron 3 of 3) MER102b|DNA|hAT-Charlie -35378 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 141-82 chr8 32363105 32363213 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -77587 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 270-104 chr13 112651450 112651675 + 2 NA intron (NM_207440, intron 1 of 2) intron (NM_207440, intron 1 of 2) 4518 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 440-12 chr1 178224269 178224669 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -116982 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 348-215 chr2 11011125 11011379 + 2 NA Intergenic L1PA13|LINE|L1 99318 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 205-122 chr18 4227978 4228123 + 2 NA intron (NM_001242761, intron 1 of 11) L1MA3|LINE|L1 -36552 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 185-177 chr5 170610355 170610498 + 2 NA intron (NM_001278339, intron 1 of 7) L4_A_Mam|LINE|RTE-X 71044 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 192-211 chr8 121879035 121879161 + 2 NA Intergenic Intergenic -237658 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 550-176 chr5 28556440 28556940 + 2 NA Intergenic L1M1|LINE|L1 -269025 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 322-366 chr4 38343178 38343425 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -23613 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 202-170 chr3 103396572 103396698 + 2 NA Intergenic L1MB3|LINE|L1 127481 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 416-177 chr2 104899874 104900131 + 2 NA Intergenic Intergenic -27407 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 440-177 chr4 31017873 31018266 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -153075 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 597-59 chr17 59537282 59537868 + 2 NA Intergenic L1ME4a|LINE|L1 -10718 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 378-271 chr3 5753547 5753833 + 2 NA Intergenic Intergenic -503435 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 616-171 chr8 80206531 80206943 + 2 NA Intergenic AluJb|SINE|Alu -34652 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 172-12 chr10 29780212 29780369 + 2 NA Intergenic Intergenic -43354 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 174-53 chr18 6872219 6872349 + 2 NA intron (NM_001010000, intron 6 of 16) intron (NM_001010000, intron 6 of 16) 37799 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 231-160 chr2 50281908 50282067 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 65767 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 260-26 chr1 187018501 187018669 + 2 NA Intergenic Intergenic -74257 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 409-144 chr2 68619606 68619878 + 2 NA Intergenic Intergenic -23846 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 310-478 chr7 46446123 46446421 + 2 NA Intergenic L2a|LINE|L2 250850 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 212-187 chr20 36075143 36075326 + 2 NA Intergenic MIR3|SINE|MIR -16180 NM_001258331 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 254-315 chr5 111707867 111708063 + 2 NA intron (NR_040093, intron 2 of 6) intron (NR_040093, intron 2 of 6) 48286 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 315-349 chr4 130363670 130363864 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -12594 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 384-34 chr10 30254386 30254582 + 2 NA Intergenic AluSz6|SINE|Alu 42632 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 388-34 chr1 227602469 227602787 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 39072 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 316-284 chr2 116660969 116661145 + 2 NA Intergenic L1M1|LINE|L1 -1153634 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 172-47 chr18 4331567 4331691 + 2 NA intron (NM_001242761, intron 1 of 11) L2|LINE|L2 67027 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 330-429 chr5 107140435 107140664 + 2 NA Intergenic L1PB2|LINE|L1 -129535 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 602-126 chr7 52456612 52457129 + 2 NA Intergenic L1M6|LINE|L1 -578763 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 635-54 chr2 80032366 80032811 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -166005 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 138-3 chr1 80420749 80420880 + 2 NA Intergenic L1MEd|LINE|L1 -114941 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 137-4 chr1 117733739 117733825 + 2 NA Intergenic Intergenic 127734 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 480-87 chr14_GL000225v1_random 33401 33737 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 341-550 chr8 139595771 139595986 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 107245 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 357-228 chr2 208740830 208741062 + 2 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 198304 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 312-266 chr2 145956759 145957008 + 2 NA Intergenic L1PB1|LINE|L1 -630174 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 286-298 chr3 173915881 173916097 + 2 NA intron (NR_046664, intron 1 of 3) intron (NR_046664, intron 1 of 3) 4807 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 382-131 chr16 59348382 59348703 + 2 NA Intergenic Intergenic 406649 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 267-83 chr12 29026375 29026535 + 2 NA Intergenic Intergenic -122823 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 499-263 chr8 83228908 83229288 + 2 NA Intergenic FLAM_A|SINE|Alu -174660 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 297-130 chr14 49155070 49155236 + 2 NA Intergenic Intergenic 431227 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 337-66 chr10 95594511 95594695 + 2 NA Intergenic Intergenic -33232 NM_024991 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 598-48 chr15 69896842 69897340 + 2 NA Intergenic Intergenic 61857 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 389-220 chr22 47650870 47651192 + 2 NA intron (NR_122046, intron 2 of 8) intron (NR_122046, intron 2 of 8) 19357 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 320-346 chr3 55267227 55267488 + 2 NA Intergenic Intergenic 89185 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 291-259 chr20 25080696 25080915 + 2 NA intron (NM_199425, intron 1 of 2) L4_C_Mam|LINE|RTE-X 1574 NM_199425 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 363-255 chr20 36246666 36246944 + 2 NA intron (NM_015511, intron 3 of 3) intron (NM_015511, intron 3 of 3) 10327 NM_001271874 25980 Hs.11314 NM_015511 ENSG00000131043 AAR2 C20orf4|CGI-23 AAR2 splicing factor protein-coding 359-119 chr12 65575296 65575503 + 2 NA intron (NR_120434, intron 3 of 4) L1ME1|LINE|L1 -18088 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 203-79 chr15 78880723 78880838 + 2 NA intron (NM_006791, intron 3 of 11) intron (NM_006791, intron 3 of 11) 7791 NM_001265604 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 377-390 chr8 49453146 49453518 + 2 NA Intergenic Intergenic 58848 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 368-16 chr1 96902956 96903232 + 2 NA Intergenic Intergenic 180456 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 536-8 chr1 88922097 88922545 + 2 NA intron (NR_146185, intron 13 of 13) L2|LINE|L2 -30754 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 570-198 chr8 98626929 98627492 + 2 NA intron (NM_001256313, intron 4 of 8) AluSz|SINE|Alu 198461 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 223-292 chr5 156179942 156180117 + 2 NA Intergenic Intergenic -146728 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 384-75 chr12 34540380 34540615 + 2 NA Intergenic ALR/Alpha|Satellite|centr 518001 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 311-508 chr8 88466928 88467159 + 2 NA Intergenic L1ME3A|LINE|L1 -139560 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 272-87 chr12 9924057 9924235 + 2 NA intron (NM_207375, intron 2 of 4) L1P3|LINE|L1 8224 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 305-190 chr16 84943407 84943703 + 2 NA Intergenic L1MB5|LINE|L1 67980 NM_001145548 55625 Hs.461610 NM_017740 ENSG00000153786 ZDHHC7 DHHC7|SERZ-B|SERZ1|ZNF370 zinc finger DHHC-type containing 7 protein-coding 505-312 chr8 124937628 124938084 + 2 NA Intergenic Intergenic -4152 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 526-44 chr11 78950436 78950772 + 2 NA intron (NM_001098816, intron 6 of 33) MIRb|SINE|MIR -375740 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 634-144 chr7 64694572 64695047 + 2 NA intron (NM_016220, intron 6 of 6) intron (NM_016220, intron 6 of 6) 15745 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 420-191 chr3 134103166 134103508 + 2 NA Intergenic L1MEc|LINE|L1 -45689 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 393-327 chr7 62917165 62917418 + 2 NA Intergenic ALR/Alpha|Satellite|centr 386765 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 377-17 chr1 113220560 113220924 + 2 NA Intergenic Intergenic -14489 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 232-16 chr1 173244186 173244334 + 2 NA intron (NR_037845, intron 2 of 2) LTR85a|LTR|Gypsy? -36929 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 547-235 chr8 46314111 46314470 + 2 NA Intergenic ALR/Alpha|Satellite|centr 303353 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 486-117 chr17 72798834 72799252 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -158571 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 346-90 chr12 14150871 14151066 + 2 NA Intergenic MIR3|SINE|MIR -170612 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 571-149 chr6 56149671 56150090 + 2 NA intron (NR_134849, intron 10 of 29) L2|LINE|L2 -58218 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 157-26 chr11 70832189 70832303 + 2 NA intron (NM_012309, intron 10 of 24) intron (NM_012309, intron 10 of 24) -30544 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 289-256 chr2 214356906 214357101 + 2 NA intron (NR_047660, intron 14 of 14) L1MEd|LINE|L1 -54051 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 346-459 chr7 27871028 27871369 + 2 NA intron (NM_175061, intron 3 of 4) intron (NM_175061, intron 3 of 4) 131103 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 261-152 chr17_KI270730v1_random 34915 35089 + 2 NA NA Intergenic NA NA 265-187 chr2 104348433 104348623 + 2 NA Intergenic L1MA7|LINE|L1 59804 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 713-2 chr1 57992169 57992687 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 131847 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 157-34 chr13 64892561 64892647 + 2 NA Intergenic Intergenic -816593 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 364-42 chr10 11309021 11309249 + 2 NA intron (NM_001025076, intron 9 of 13) L1M4b|LINE|L1 35539 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 237-137 chr16 74127469 74127643 + 2 NA Intergenic L1MEc|LINE|L1 87965 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 420-84 chr14 81073381 81073608 + 2 NA intron (NM_001142626, intron 3 of 8) L1MEg|LINE|L1 117873 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 637-8 chr1 115786411 115787018 + 2 NA Intergenic L1ME1|LINE|L1 -17909 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 228-354 chr8 130807410 130807597 + 2 NA intron (NM_001115, intron 14 of 17) MLT1A1|LTR|ERVL-MaLR 233406 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 200-82 chr14 100480567 100480746 + 2 NA intron (NM_001350950, intron 2 of 5) Charlie7|DNA|hAT-Charlie 87414 NM_001159531 57596 Hs.211751 NM_020836 ENSG00000183092 BEGAIN - brain enriched guanylate kinase associated protein-coding 265-79 chr12 45230487 45230700 + 2 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) 14498 NM_001025356 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 462-269 chr7 89175421 89175726 + 2 NA intron (NM_181646, intron 1 of 3) L1MA3|LINE|L1 -379836 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 278-286 chr3 114528103 114528310 + 2 NA intron (NR_121662, intron 3 of 6) intron (NR_121662, intron 3 of 6) 74613 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 120-7 chr1 242449032 242449145 + 2 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) 380 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 398-106 chr14 61940442 61940740 + 2 NA intron (NM_001367663, intron 1 of 7) MIR|SINE|MIR 12896 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 327-464 chr7 84946662 84946901 + 2 NA Intergenic Intergenic 175150 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 274-218 chr2 124178148 124178333 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 152953 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 351-291 chr3 38402336 38402516 + 2 NA intron (NR_146068, intron 15 of 16) intron (NR_146068, intron 15 of 16) -51464 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 551-80 chr18 78889182 78889612 + 2 NA Intergenic L1MEg|LINE|L1 -90878 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 203-219 chr7 48814965 48815108 + 2 NA Intergenic Intergenic -109511 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 379-20 chr1 162479091 162479343 + 2 NA Intergenic AluSq10|SINE|Alu -17957 NM_001184763 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 338-256 chr2 58437723 58438026 + 2 NA Intergenic Intergenic -82879 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 381-384 chr8 101503820 101504043 + 2 NA intron (NM_001330593, intron 1 of 15) L1ME4a|LINE|L1 11492 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 333-330 chr22 28269687 28269970 + 2 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -190041 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 536-141 chr2 223920191 223920651 + 2 NA intron (NM_020830, intron 1 of 11) intron (NM_020830, intron 1 of 11) 24914 NM_020830 57590 Hs.368359 NM_020830 ENSG00000085449 WDFY1 FENS-1|FENS1|WDF1|ZFYVE17 WD repeat and FYVE domain containing 1 protein-coding 213-129 chr2 22873636 22873787 + 2 NA Intergenic LTR78|LTR|ERV1 337232 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 472-283 chr6 120634511 120634843 + 2 NA Intergenic Intergenic 619498 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 783-29 chr16 3409747 3410326 + 2 NA TTS (NM_001347868) TTS (NM_001347868) 8821 NM_001347870 7727 Hs.155204 NM_003450 ENSG00000103343 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 130-73 chr6 51872098 51872218 + 2 NA intron (NM_138694, intron 46 of 66) HAL1|LINE|L1 215455 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 683-95 chr8 144615397 144615968 + 2 NA intron (NM_001308208, intron 1 of 10) intron (NM_001308208, intron 1 of 10) -2179 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 260-411 chr7 54150506 54150672 + 2 NA Intergenic L1MA10|LINE|L1 -180108 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 375-391 chr7 135676115 135676405 + 2 NA 3' UTR (NM_001130929, exon 3 of 3) 3' UTR (NM_001130929, exon 3 of 3) 13746 NM_001130929 647087 Hs.200022 NM_001130929 ENSG00000243317 STMP1 C7orf73|PL-5283 short transmembrane mitochondrial protein 1 protein-coding 289-224 chr2 74544401 74544557 + 2 NA intron (NM_032603, intron 4 of 13) L2a|LINE|L2 -4541 NM_001197260 1796 Hs.103854 NM_001381 ENSG00000115325 DOK1 P62DOK|pp62 docking protein 1 protein-coding 282-78 chr11 112869321 112869582 + 2 NA Intergenic L1MA8|LINE|L1 -91969 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 412-171 chr2 145822837 145823173 + 2 NA Intergenic Intergenic -764052 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 271-318 chr4 84274903 84275045 + 2 NA intron (NR_125909, intron 4 of 8) L1MB1|LINE|L1 24195 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 380-387 chr8 50894156 50894441 + 2 NA Intergenic L1M5|LINE|L1 730167 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 182-167 chr8 74314308 74314460 + 2 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 6977 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 418-200 chr4 177798617 177798977 + 2 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 70040 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 334-509 chr7 127601743 127601921 + 2 NA 3' UTR (NM_020369, exon 7 of 7) 3' UTR (NM_020369, exon 7 of 7) 8096 NM_020369 29999 Hs.712692 NM_020369 ENSG00000106328 FSCN3 - fascin actin-bundling protein 3 protein-coding 463-265 chr7 50446559 50446901 + 2 NA exon (NM_001346564, exon 4 of 4) exon (NM_001346564, exon 4 of 4) 3620 NM_001287496 63979 Hs.137516 NM_022116 ENSG00000132436 FIGNL1 - fidgetin like 1 protein-coding 756-5 chr10 53825328 53825938 + 2 NA intron (NM_001142773, intron 30 of 31) intron (NM_001142773, intron 30 of 31) -660597 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 204-283 chr8 78489588 78489762 + 2 NA Intergenic Intergenic -26665 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 304-270 chr2 123254964 123255131 + 2 NA Intergenic L1MCb|LINE|L1 -181566 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 220-155 chr2 31785245 31785408 + 2 NA Intergenic L1PREC2|LINE|L1 18654 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 434-90 chr15 54479584 54480008 + 2 NA intron (NM_001329919, intron 18 of 31) L1MA4A|LINE|L1 467148 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 183-136 chr6 89911247 89911338 + 2 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 16823 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 448-145 chr21 40525799 40526093 + 2 NA intron (NR_073202, intron 3 of 32) intron (NR_073202, intron 3 of 32) 104821 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 211-105 chr16 76162488 76162633 + 2 NA Intergenic MIRb|SINE|MIR -114841 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 485-310 chr9 82327331 82327698 + 2 NA Intergenic L1PA10|LINE|L1 338742 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 295-393 chr5 166134730 166134957 + 2 NA Intergenic HERVFH21-int|LTR|ERV1 791527 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 439-308 chr9 103441486 103441727 + 2 NA Intergenic L2|LINE|L2 -116573 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 219-187 chr2 162210031 162210174 + 2 NA intron (NM_004460, intron 11 of 25) intron (NM_004460, intron 11 of 25) 33343 NM_004460 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 356-322 chr3 54996324 54996533 + 2 NA intron (NM_018398, intron 31 of 37) intron (NM_018398, intron 31 of 37) -29326 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 243-54 chr10 83272081 83272234 + 2 NA Intergenic Intergenic 404932 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 440-168 chr3 166203717 166203992 + 2 NA Intergenic L2|LINE|L2 -366431 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 301-382 chr5 165171988 165172231 + 2 NA Intergenic Intergenic 701830 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 368-419 chr7 40983726 40983969 + 2 NA Intergenic Intergenic -3908 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 371-166 chr2 52198735 52198989 + 2 NA intron (NR_135237, intron 7 of 10) L1ME2z|LINE|L1 -171786 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 255-386 chr7 50018496 50018710 + 2 NA intron (NM_001159878, intron 5 of 7) intron (NM_001159878, intron 5 of 7) 74643 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 386-8 chr1 98211075 98211367 + 2 NA intron (NR_046088, intron 1 of 2) intron (NR_046088, intron 1 of 2) 510 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 243-233 chr2 132912028 132912243 + 2 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) -3422 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 310-545 chr8 139570227 139570426 + 2 NA Intergenic Intergenic 132797 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 268-397 chr8 69969774 69969974 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 101378 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 326-129 chr12 98289062 98289231 + 2 NA Intergenic Intergenic 167999 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 400-87 chr14 36882678 36883040 + 2 NA intron (NM_001171170, intron 1 of 10) L2a|LINE|L2 69532 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 792-34 chr2 171276715 171277233 + 2 NA Intergenic L1MA3|LINE|L1 -45681 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 317-355 chr4 70961069 70961267 + 2 NA intron (NM_173468, intron 2 of 5) MER44B|DNA|TcMar-Tigger -32481 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 431-167 chr21 40655287 40655635 + 2 NA intron (NR_073202, intron 3 of 32) AluJb|SINE|Alu -24694 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 333-214 chr19 36731757 36731957 + 2 NA Intergenic AluJb|SINE|Alu 28176 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 317-400 chr5 155111287 155111507 + 2 NA Intergenic Intergenic 97642 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 504-225 chr6 44596519 44596867 + 2 NA Intergenic L1ME4b|LINE|L1 -44812 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 254-233 chr22 26924073 26924230 + 2 NA Intergenic Intergenic 20859 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 327-99 chr11 114928808 114929102 + 2 NA Intergenic MIR1_Amn|SINE|MIR 250428 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 299-392 chr6 40010380 40010548 + 2 NA Intergenic L1MA4|LINE|L1 -76002 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 307-505 chr9 9690490 9690666 + 2 NA intron (NM_002839, intron 7 of 45) L1MA4|LINE|L1 -108814 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 332-139 chr13 54000797 54001108 + 2 NA Intergenic Intergenic 131919 NR_108062 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 329-360 chr3 51015541 51015756 + 2 NA intron (NM_004947, intron 5 of 52) L1M1|LINE|L1 340568 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 325-121 chr12 16644798 16644986 + 2 NA Intergenic Intergenic -36678 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 655-100 chr5 131709283 131709789 + 2 NA intron (NM_001008738, intron 6 of 16) intron (NM_001008738, intron 6 of 16) -74307 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 266-290 chr4 72618377 72618564 + 2 NA Intergenic L1MA3|LINE|L1 -49249 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 237-128 chr16 5683792 5683932 + 2 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 51395 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 278-18 chr1 198816680 198816890 + 2 NA intron (NR_040073, intron 2 of 2) MLT1H-int|LTR|ERVL-MaLR 42197 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 224-279 chr6 72317524 72317727 + 2 NA intron (NM_001350466, intron 19 of 24) intron (NM_001350466, intron 19 of 24) -49121 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 317-83 chr11 63192798 63193049 + 2 NA intron (NM_199352, intron 4 of 8) L1PA13|LINE|L1 36729 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 418-166 chr3 114694705 114695060 + 2 NA intron (NM_001348805, intron 5 of 10) intron (NM_001348805, intron 5 of 10) 48643 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 323-523 chr7 159249044 159249229 + 2 NA Intergenic Intergenic -104179 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 657-45 chr18 27371981 27372505 + 2 NA Intergenic Intergenic -29587 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 253-127 chr14 46680069 46680305 + 2 NA Intergenic Intergenic -28406 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 182-112 chr3 169043364 169043483 + 2 NA Intergenic Intergenic 102100 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 261-50 chr10 116901101 116901286 + 2 NA intron (NM_001258300, intron 17 of 17) intron (NM_001258300, intron 17 of 17) -51471 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 389-321 chr6 104609246 104609493 + 2 NA Intergenic MIR3|SINE|MIR 250177 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 546-193 chr5 98369732 98370121 + 2 NA Intergenic L1MA8|LINE|L1 -208687 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 402-340 chr8 81576549 81576788 + 2 NA Intergenic Intergenic -45278 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 317-119 chr12 128863087 128863324 + 2 NA intron (NM_001366887, intron 1 of 10) MER39B|LTR|ERV1 9727 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 350-84 chr11 134558237 134558413 + 2 NA Intergenic MIRb|SINE|MIR 121843 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 588-35 chr14 42082736 42083183 + 2 NA Intergenic L1MA2|LINE|L1 476103 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 531-200 chr5 91714710 91715083 + 2 NA Intergenic Intergenic -331579 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 243-108 chr13 38451506 38451715 + 2 NA Intergenic L1ME1|LINE|L1 101759 NM_001286706 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 302-159 chr16 55726719 55726975 + 2 NA intron (NR_033740, intron 1 of 13) L1ME4a|LINE|L1 1922 NR_033740 390732 Hs.554599 NR_033740 CES1P2 - carboxylesterase 1 pseudogene 2 pseudo 318-189 chr15 98259648 98259826 + 2 NA Intergenic Intergenic 71821 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 192-58 chr14 21627978 21628118 + 2 NA Intergenic Intergenic 6892 NM_001005466 26534 Hs.554580 NM_001005466 ENSG00000255582 OR10G2 OR14-41 olfactory receptor family 10 subfamily G member 2 protein-coding 404-77 chr12 31908915 31909203 + 2 NA Intergenic HERVFH19-int|LTR|ERV1 -21856 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 554-179 chr5 138800997 138801355 + 2 NA intron (NM_001323985, intron 3 of 17) Tigger2b_Pri|DNA|TcMar-Tigger -47252 NR_134244 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 270-313 chr5 114715206 114715467 + 2 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 58077 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 375-77 chr11 79350461 79350690 + 2 NA intron (NM_001098816, intron 1 of 33) AluJr|SINE|Alu 51534 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 313-538 chr8 125359895 125360206 + 2 NA intron (NM_001349486, intron 7 of 7) L2|LINE|L2 -70308 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 323-389 chr5 6924199 6924446 + 2 NA Intergenic Intergenic -96401 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 537-101 chr2 8360253 8360592 + 2 NA Intergenic Intergenic -32003 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 291-448 chr8 81394654 81394880 + 2 NA Intergenic Intergenic 52672 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 118-40 chr4 178913862 178913968 + 2 NA Intergenic Intergenic -1005979 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 307-121 chr13 63192743 63193037 + 2 NA intron (NR_126409, intron 6 of 6) L1M5|LINE|L1 135204 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 453-154 chr3 18623735 18624041 + 2 NA Intergenic Intergenic -178296 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 350-496 chr7 119445656 119445963 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner 461566 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 227-103 chr14 47561327 47561504 + 2 NA intron (NM_001113498, intron 1 of 16) L1PA15|LINE|L1 113539 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 232-304 chr5 63096293 63096482 + 2 NA Intergenic MIRc|SINE|MIR 517568 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 645-60 chr2 152938557 152939043 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 220163 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 245-45 chr10 55361152 55361369 + 2 NA intron (NM_001354404, intron 2 of 34) L1ME3A|LINE|L1 -237782 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 328-18 chr1 104361598 104361898 + 2 NA Intergenic L1MA10|LINE|L1 288725 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 272-446 chr8 72314426 72314626 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -62892 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 225-27 chr10 30922495 30922663 + 2 NA intron (NM_182755, intron 3 of 7) AluSq|SINE|Alu 76938 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 282-310 chr3 137210465 137210691 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy 252595 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 173-31 chr13 96235241 96235368 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 144465 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 316-217 chr17 79642730 79642978 + 2 NA Intergenic L1MEf|LINE|L1 -31803 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 972-8 chr16 63760840 63761489 + 2 NA Intergenic L1MA4|LINE|L1 1360899 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 275-39 chr10 33830411 33830590 + 2 NA Intergenic LTR73|LTR|ERV1 -57820 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 274-175 chr18 22892083 22892296 + 2 NA Intergenic L1MB7|LINE|L1 -41139 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 218-77 chr12 127062673 127062855 + 2 NA Intergenic Intergenic -2367 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 284-49 chr10 78704059 78704287 + 2 NA Intergenic L1MB7|LINE|L1 363275 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 537-36 chr11 13688196 13688729 + 2 NA intron (NM_032228, intron 1 of 11) intron (NM_032228, intron 1 of 11) 19794 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 229-92 chr12 57353158 57353334 + 2 NA intron (NM_001351217, intron 1 of 21) L1M5|LINE|L1 -10790 NM_001351214 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 898-38 chr8 82111695 82112286 + 2 NA Intergenic Intergenic -269704 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 331-22 chr1 159886480 159886767 + 2 NA exon (NM_012337, exon 6 of 12) exon (NM_012337, exon 6 of 12) 13456 NR_130464 100422852 NR_130464 ENSG00000266458 MIR4259 - microRNA 4259 ncRNA 414-325 chr8 68292069 68292330 + 2 NA Intergenic L1MC3|LINE|L1 -38174 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 554-208 chr8 135112146 135112520 + 2 NA Intergenic Intergenic -121798 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 559-78 chr18 40707401 40707838 + 2 NA Intergenic Intergenic 641333 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 586-103 chr3 147018330 147018724 + 2 NA Intergenic L1M4a1|LINE|L1 96604 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 349-5 chr1 13546730 13546959 + 2 NA Intergenic LTR79|LTR|ERVL -32841 NM_001010847 126755 Hs.657356 NM_001010847 ENSG00000162494 LRRC38 - leucine rich repeat containing 38 protein-coding 518-53 chr11 55055629 55056115 + 2 NA Intergenic ALR/Alpha|Satellite|centr -206283 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 589-99 chr3 178401590 178401921 + 2 NA Intergenic L1ME3A|LINE|L1 -17446 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 336-569 chr8 138634663 138634908 + 2 NA intron (NM_152888, intron 49 of 64) intron (NM_152888, intron 49 of 64) -137055 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 348-431 chr5 136602738 136603048 + 2 NA Intergenic L1PB2|LINE|L1 -237417 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 604-159 chr8 36596326 36596726 + 2 NA Intergenic MIRb|SINE|MIR -187848 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 322-200 chr17 52519223 52519404 + 2 NA intron (NR_146898, intron 1 of 3) AluSg4|SINE|Alu 128791 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 373-382 chr7 62648919 62649283 + 2 NA Intergenic ALR/Alpha|Satellite|centr 654955 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 455-5 chr1 49407685 49408099 + 2 NA intron (NR_046839, intron 3 of 3) intron (NR_046839, intron 3 of 3) 64193 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 223-298 chr6 27354945 27355123 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 16491 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 352-72 chr11 20198244 20198480 + 2 NA Intergenic Intergenic -37887 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 282-462 chr8 114052042 114052258 + 2 NA Intergenic Intergenic -615211 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 721-60 chr4 30486963 30487495 + 2 NA Intergenic Intergenic -233140 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 563-88 chr2 63922380 63922835 + 2 NA intron (NM_001005739, intron 12 of 22) MIRc|SINE|MIR 80727 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 341-60 chr10 48759719 48759947 + 2 NA intron (NM_020945, intron 12 of 61) L1ME1|LINE|L1 74370 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 178-60 chr19 51878772 51878909 + 2 NA intron (NM_001370450, intron 3 of 5) L1ME3G|LINE|L1 9096 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 434-222 chr5 40601921 40602284 + 2 NA Intergenic Intergenic -77813 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 178-139 chr7 115751150 115751310 + 2 NA Intergenic Intergenic -169789 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 339-29 chr1 159307247 159307525 + 2 NA intron (NM_002001, intron 5 of 5) intron (NM_002001, intron 5 of 5) 7273 NM_001004467 441911 Hs.553833 NM_001004467 ENSG00000196266 OR10J3 OR1-25|OR10J3P olfactory receptor family 10 subfamily J member 3 protein-coding 426-136 chr2 102346228 102346494 + 2 NA TTS (NM_001282408) TTS (NM_001282408) 9104 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 835-37 chr21 26925647 26926271 + 2 NA intron (NM_007038, intron 7 of 7) intron (NM_007038, intron 7 of 7) -28002 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 511-232 chr6 90060426 90060742 + 2 NA intron (NM_021813, intron 5 of 8) L1MEd|LINE|L1 166115 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 419-130 chr2 14339870 14340271 + 2 NA intron (NR_103814, intron 1 of 3) L1P4|LINE|L1 60888 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 516-98 chr16 84036184 84036545 + 2 NA intron (NM_001080442, intron 2 of 9) intron (NM_001080442, intron 2 of 9) 5793 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 274-335 chr6 64116984 64117201 + 2 NA intron (NM_001292009, intron 31 of 43) L1M2a|LINE|L1 310256 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 143-58 chr4 37329996 37330112 + 2 NA intron (NM_001144990, intron 2 of 6) (ATTGA)n|Simple_repeat|Simple_repeat 85311 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 543-2 chr1 38359730 38360113 + 2 NA Intergenic Intergenic -115275 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 547-179 chr5 37849893 37850297 + 2 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 9657 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 334-449 chr6 3071837 3072088 + 2 NA intron (NM_001354934, intron 1 of 11) intron (NM_001354934, intron 1 of 11) 3468 NM_001354930 8737 Hs.519842 NM_003804 ENSG00000137275 RIPK1 IMD57|RIP|RIP-1|RIP1 receptor interacting serine/threonine kinase 1 protein-coding 560-109 chr22 44476448 44476914 + 2 NA Intergenic L1MDa|LINE|L1 21552 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 366-203 chr2 80906350 80906633 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 560455 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 300-360 chr5 54338390 54338603 + 2 NA intron (NR_126379, intron 1 of 4) L1M2|LINE|L1 17552 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 303-450 chr8 77749433 77749697 + 2 NA Intergenic L1PA14|LINE|L1 298868 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 328-580 chr8 126022094 126022416 + 2 NA Intergenic MIRb|SINE|MIR -71058 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 801-17 chr16 9539679 9540168 + 2 NA Intergenic Intergenic -84418 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 366-28 chr1 192176535 192176803 + 2 NA intron (NM_130782, intron 3 of 4) L2a|LINE|L2 18207 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 679-103 chr7 93134649 93135122 + 2 NA exon (NM_001303497, exon 6 of 6) exon (NM_001303497, exon 6 of 6) 13500 NM_001303498 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 389-334 chr7 4351914 4352183 + 2 NA Intergenic L1MB3|LINE|L1 -217211 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 273-428 chr7 80930879 80931074 + 2 NA Intergenic Intergenic -8587 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 347-337 chr4 37346760 37346987 + 2 NA intron (NM_001144990, intron 2 of 6) L1MB8|LINE|L1 102130 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 272-290 chr3 193840489 193840663 + 2 NA TTS (NR_146718) TTS (NR_146718) 3433 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 371-55 chr10 111490778 111491101 + 2 NA Intergenic L1M1|LINE|L1 376648 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 418-66 chr14 46332869 46333162 + 2 NA intron (NR_102702, intron 3 of 3) HAL1|LINE|L1 -138344 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 291-22 chr1 153324273 153324531 + 2 NA Intergenic L1M5|LINE|L1 -13684 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 326-230 chr2 19152860 19153036 + 2 NA Intergenic L1MB1|LINE|L1 -125977 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 302-471 chr8 132595858 132596016 + 2 NA intron (NR_135913, intron 9 of 10) L2a|LINE|L2 -34458 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 414-96 chr15 37688786 37689153 + 2 NA Intergenic Intergenic -245638 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 346-314 chr3 63842072 63842319 + 2 NA intron (NM_025075, intron 1 of 7) L1M2|LINE|L1 -18450 NR_104326 100874039 NR_104326 ENSG00000240549 THOC7-AS1 - THOC7 antisense RNA 1 ncRNA 710-17 chr11 38802316 38802802 + 2 NA Intergenic LTR78|LTR|ERV1 153701 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 125-51 chr5 16992470 16992552 + 2 NA Intergenic Intergenic -56223 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 139-37 chr17 72094424 72094509 + 2 NA TTS (NR_110827) TTS (NR_110827) 21550 NR_103738 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 136-57 chr21 42044614 42044701 + 2 NA Intergenic AluSx1|SINE|Alu -18220 NM_001199527 89766 Hs.242520 NM_173568 ENSG00000177398 UMODL1 - uromodulin like 1 protein-coding 270-171 chr19 55890449 55890625 + 2 NA Intergenic MER30|DNA|hAT-Charlie 41799 NM_001321057 126204 Hs.446924 NM_176810 ENSG00000173572 NLRP13 CLR19.7|NALP13|NOD14|PAN13 NLR family pyrin domain containing 13 protein-coding 363-419 chr7 56512929 56513117 + 2 NA Intergenic Intergenic 16800 NR_026929 222029 Hs.568108 NR_026929 DKFZp434L192 - uncharacterized protein DKFZp434L192 ncRNA 154-58 chr20 22911639 22911744 + 2 NA Intergenic Intergenic -123729 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 209-47 chr10 109009841 109010048 + 2 NA Intergenic MER91B|DNA|hAT-Tip100 913302 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 352-64 chr10 115314791 115314983 + 2 NA intron (NM_207303, intron 17 of 28) intron (NM_207303, intron 17 of 28) 221522 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 325-305 chr20 24336585 24336839 + 2 NA Intergenic L1MA6|LINE|L1 -132487 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 405-204 chr3 100171362 100171726 + 2 NA intron (NM_001167924, intron 6 of 9) L4_B_Mam|LINE|RTE-X -14280 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 372-122 chr12 102650536 102650771 + 2 NA Intergenic L2a|LINE|L2 -170090 NM_001111285 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 186-119 chr4 65934838 65934993 + 2 NA Intergenic Intergenic -264420 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 168-69 chr2 215033544 215033649 + 2 NA intron (NR_103740, intron 9 of 54) intron (NR_103740, intron 9 of 54) -1510 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 295-223 chr2 118419680 118419899 + 2 NA Intergenic L2a|LINE|L2 183177 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 359-472 chr8 80619301 80619640 + 2 NA Intergenic Intergenic 133244 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 300-384 chr6 26348726 26348906 + 2 NA Intergenic L1MC5a|LINE|L1 -16343 NM_001197249 11118 Hs.376046 NM_007047 ENSG00000186470 BTN3A2 BT3.2|BTF4|BTN3.2|CD277 butyrophilin subfamily 3 member A2 protein-coding 290-119 chr13 58913874 58914081 + 2 NA Intergenic Intergenic -680860 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 445-212 chr4 172556993 172557267 + 2 NA intron (NM_001034845, intron 5 of 12) MIR|SINE|MIR 131787 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 666-37 chr17 34090849 34091247 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 65758 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 423-48 chr11 50668936 50669178 + 2 NA Intergenic ALR/Alpha|Satellite|centr 259910 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 197-77 chr18 6541112 6541259 + 2 NA intron (NR_120518, intron 2 of 5) intron (NR_120518, intron 2 of 5) 29769 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 176-132 chr7 50591395 50591555 + 2 NA 3' UTR (NM_001350814, exon 19 of 19) 3' UTR (NM_001350814, exon 19 of 19) -26070 NM_001082971 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 430-17 chr1 205060004 205060357 + 2 NA intron (NM_001346083, intron 7 of 22) MIR|SINE|MIR 16968 NR_144350 6900 Hs.519220 NM_005076 ENSG00000184144 CNTN2 AXT|FAME5|TAG-1|TAX|TAX1 contactin 2 protein-coding 281-47 chr10 84694089 84694333 + 2 NA Intergenic L1M4|LINE|L1 269042 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 154-102 chr7 159273076 159273202 + 2 NA Intergenic Intergenic -128182 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 214-330 chr8 109834617 109834773 + 2 NA Intergenic L1MEc|LINE|L1 141076 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 436-56 chr11 114362909 114363285 + 2 NA non-coding (NR_120567, exon 3 of 3) non-coding (NR_120567, exon 3 of 3) 16942 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 515-164 chr3 86447352 86447770 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -34382 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 660-104 chr8 18152406 18153042 + 2 NA Intergenic AluJb|SINE|Alu -17743 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 313-228 chr2 8646259 8646448 + 2 NA Intergenic MER61-int|LTR|ERV1 35508 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 241-169 chr19 56491066 56491272 + 2 NA intron (NR_036521, intron 1 of 1) intron (NR_036521, intron 1 of 1) 13045 NR_036522 100128252 Hs.23133 NM_198879 ENSG00000166770 ZNF667-AS1 MORT ZNF667 antisense RNA 1 (head to head) ncRNA 320-202 chr17 21152763 21153047 + 2 NA intron (NM_015510, intron 1 of 6) L1MC1|LINE|L1 -13282 NM_001330159 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 363-166 chr16 63114540 63114865 + 2 NA Intergenic L1MB1|LINE|L1 -1078264 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 333-393 chr4 62629284 62629588 + 2 NA Intergenic Intergenic -467671 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 148-14 chr11 98512406 98512511 + 2 NA Intergenic L1MB2|LINE|L1 -508491 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 404-340 chr9 26482896 26483195 + 2 NA Intergenic L1ME3G|LINE|L1 409757 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 501-275 chr9 14653549 14654023 + 2 NA intron (NR_148717, intron 8 of 11) intron (NR_148717, intron 8 of 11) 39646 NM_001354120 340481 Hs.649522 NM_178566 ENSG00000175893 ZDHHC21 DHHC-21|DHHC21|DNZ1|HSPC097 zinc finger DHHC-type containing 21 protein-coding 373-117 chr14 72242892 72243157 + 2 NA intron (NM_001370288, intron 2 of 16) AluSg|SINE|Alu -273796 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 278-263 chr3 21672424 21672681 + 2 NA intron (NM_024697, intron 1 of 7) MamSINE1|SINE|tRNA-RTE 78658 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 441-58 chr12 91204094 91204402 + 2 NA Intergenic Intergenic -21431 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 310-276 chr2 195109772 195109965 + 2 NA Intergenic L1M1|LINE|L1 379273 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 629-82 chr3 36042658 36043158 + 2 NA Intergenic L1MA2|LINE|L1 298432 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 249-3 chr1 33192060 33192243 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -10108 NM_018207 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 636-128 chr6 64298124 64298532 + 2 NA intron (NM_001292009, intron 30 of 43) L1MA9|LINE|L1 491492 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 295-193 chr19 52390498 52390769 + 2 NA intron (NR_125345, intron 6 of 6) intron (NR_125345, intron 6 of 6) 7124 NR_125345 102724105 Hs.188680 NR_125345 ENSG00000269834 ZNF528-AS1 - ZNF528 antisense RNA 1 ncRNA 268-57 chr10 101909722 101909940 + 2 NA intron (NM_024541, intron 23 of 25) L1MA2|LINE|L1 -65911 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 388-152 chr2 28337061 28337412 + 2 NA intron (NM_001329114, intron 13 of 13) (CCCCT)n|Simple_repeat|Simple_repeat -26777 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 141-38 chr2 31704587 31704702 + 2 NA Intergenic L2c|LINE|L2 99336 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 420-155 chr2 162052842 162053100 + 2 NA intron (NM_001935, intron 2 of 25) MLT1A1-int|LTR|ERVL-MaLR 21244 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 413-161 chr2 215749462 215749807 + 2 NA intron (NR_037195, intron 2 of 9) intron (NR_037195, intron 2 of 9) 31591 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 355-318 chr3 40214865 40215182 + 2 NA intron (NM_001284424, intron 11 of 15) intron (NM_001284424, intron 11 of 15) 94675 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 257-130 chr16 10373991 10374203 + 2 NA Intergenic L1M4|LINE|L1 -11964 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 361-45 chr10 55682947 55683137 + 2 NA Intergenic L1MA6|LINE|L1 -55100 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 275-240 chr3 5715528 5715784 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -465401 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 335-328 chr22 47817416 47817603 + 2 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 185835 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 620-16 chr10 68869306 68869755 + 2 NA intron (NM_152709, intron 1 of 3) intron (NM_152709, intron 1 of 3) -31785 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 457-3 chr1 30998284 30998712 + 2 NA intron (NM_001020658, intron 5 of 21) AluJr|SINE|Alu -30261 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 301-411 chr7 1791536 1791782 + 2 NA Intergenic L1MEc|LINE|L1 -49349 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 346-400 chr5 122170422 122170639 + 2 NA intron (NM_001195535, intron 1 of 2) MER21C|LTR|ERVL 10354 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 288-176 chr2 27423632 27423793 + 2 NA Intergenic L1M5|LINE|L1 -4078 NM_001321357 29959 Hs.515876 NM_013392 ENSG00000115216 NRBP1 BCON3|MADM|MUDPNP|NRBP nuclear receptor binding protein 1 protein-coding 390-270 chr4 95640135 95640418 + 2 NA Intergenic MIRb|SINE|MIR -91303 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 542-27 chr10 101874384 101874858 + 2 NA intron (NM_024541, intron 24 of 25) intron (NM_024541, intron 24 of 25) -30701 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 222-210 chr20 56964745 56964884 + 2 NA Intergenic MER33|DNA|hAT-Charlie -248882 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 417-3 chr1 46974947 46975268 + 2 NA intron (NM_001320289, intron 1 of 11) L1MA2|LINE|L1 13743 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 368-410 chr6 157494059 157494396 + 2 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) -34905 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 399-141 chr2 49859970 49860235 + 2 NA Intergenic Intergenic 114101 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 225-342 chr8 22653724 22653909 + 2 NA intron (NM_018688, intron 1 of 8) Arthur1|DNA|hAT-Tip100 -11607 NR_027715 80094 Hs.675917 NM_025026 BIN3-IT1 - BIN3 intronic transcript 1 ncRNA 209-341 chr8 140294458 140294592 + 2 NA intron (NM_001160372, intron 11 of 22) intron (NM_001160372, intron 11 of 22) 163219 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 232-144 chr18 64129800 64130001 + 2 NA intron (NR_033881, intron 2 of 9) intron (NR_033881, intron 2 of 9) 19126 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 249-372 chr7 548098 548283 + 2 NA Intergenic L1MD1|LINE|L1 -13768 NR_132384 101927000 Hs.551793 NR_132384 ENSG00000229380 LOC101927000 - uncharacterized LOC101927000 ncRNA 742-46 chr20 58155606 58156228 + 2 NA intron (NM_178456, intron 3 of 3) MIR|SINE|MIR 5015 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 447-198 chr4 96408997 96409400 + 2 NA intron (NR_147149, intron 1 of 3) L1PA3|LINE|L1 98495 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 129-10 chr11 121522766 121522866 + 2 NA intron (NM_003105, intron 10 of 47) intron (NM_003105, intron 10 of 47) 70502 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 162-97 chr4 76514198 76514357 + 2 NA intron (NM_020859, intron 1 of 10) L1MB7|LINE|L1 -59291 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 367-159 chr17 26829488 26829801 + 2 NA Intergenic Intergenic 259597 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 334-27 chr1 162962347 162962588 + 2 NA Intergenic L1MEc|LINE|L1 -93652 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 272-251 chr22 48133207 48133403 + 2 NA Intergenic Intergenic -141059 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 369-42 chr10 59319611 59319847 + 2 NA intron (NM_001347852, intron 4 of 12) MIR3|SINE|MIR 42820 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 502-81 chr14 30088652 30088986 + 2 NA Intergenic L1MA2|LINE|L1 -160972 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 268-165 chr18 59171669 59171869 + 2 NA Intergenic L1MA4|LINE|L1 31885 NM_001307941 90701 Hs.45107 NM_033280 ENSG00000166562 SEC11C SEC11L3|SPC21|SPCS4C SEC11 homolog C, signal peptidase complex subunit protein-coding 223-315 chr7 24323584 24323760 + 2 NA Intergenic HAL1|LINE|L1 39482 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 321-432 chr4 126613413 126613613 + 2 NA Intergenic Intergenic -1019444 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 338-289 chr2 226098526 226098716 + 2 NA Intergenic L1ME1|LINE|L1 -44173 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 127-66 chr5 23803393 23803484 + 2 NA Intergenic Intergenic -147910 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 241-185 chr2 66985915 66986148 + 2 NA Intergenic Intergenic -63541 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 540-22 chr1 187275879 187276265 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) -167556 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 319-429 chr5 145418489 145418713 + 2 NA Intergenic L1PA11|LINE|L1 416741 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 269-180 chr2 27488574 27488807 + 2 NA intron (NM_015662, intron 1 of 47) MIRc|SINE|MIR 1053 NM_015662 26160 Hs.127401 NM_015662 ENSG00000138002 IFT172 BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim intraflagellar transport 172 protein-coding 291-142 chr14 96770775 96770986 + 2 NA intron (NR_146552, intron 3 of 3) intron (NR_146552, intron 3 of 3) -26502 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 309-441 chr5 65907237 65907418 + 2 NA Intergenic Intergenic -19227 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 271-181 chr18 59375588 59375786 + 2 NA Intergenic Intergenic -16422 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 290-257 chr21 25827779 25828041 + 2 NA Intergenic Intergenic -92256 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 663-33 chr13 72172790 72173240 + 2 NA Intergenic Intergenic -305811 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 211-268 chr7 3160557 3160690 + 2 NA Intergenic L1MB3|LINE|L1 -2050 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 310-156 chr15 53848386 53848691 + 2 NA Intergenic L1MEc|LINE|L1 -85660 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 389-238 chr3 109267863 109268245 + 2 NA Intergenic L1M4a1|LINE|L1 48463 NM_138815 151871 Hs.351113 NM_138815 ENSG00000163530 DPPA2 CT100|ECAT15-2|PESCRG1 developmental pluripotency associated 2 protein-coding 358-364 chr5 43791167 43791354 + 2 NA Intergenic HERVH-int|LTR|ERV1 -188030 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 380-96 chr12 54937061 54937289 + 2 NA Intergenic MIRc|SINE|MIR 36557 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 320-62 chr10 65464730 65465006 + 2 NA Intergenic L1PB1|LINE|L1 -106557 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 210-179 chr3 99280779 99280927 + 2 NA Intergenic L1MA1|LINE|L1 -357741 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 396-14 chr1 90663062 90663440 + 2 NA Intergenic MIR3|SINE|MIR 5501 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 278-453 chr9 79534509 79534676 + 2 NA Intergenic Intergenic -37181 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 580-29 chr11 111368071 111368456 + 2 NA intron (NM_006235, intron 1 of 4) intron (NM_006235, intron 1 of 4) 11012 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 203-141 chr3 18954186 18954363 + 2 NA Intergenic L1ME2|LINE|L1 -194236 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 315-210 chr19 37079887 37080143 + 2 NA intron (NM_001329519, intron 1 of 4) intron (NM_001329519, intron 1 of 4) 1582 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 112-41 chr5 142921990 142922099 + 2 NA intron (NR_146198, intron 10 of 22) intron (NR_146198, intron 10 of 22) -53134 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 348-506 chr7 134754639 134754889 + 2 NA Intergenic L1ME3G|LINE|L1 -24870 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 678-46 chr2 21949911 21950473 + 2 NA Intergenic AluSc|SINE|Alu -239540 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 232-287 chr5 4665726 4665876 + 2 NA Intergenic Intergenic -107680 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 357-269 chr3 54773360 54773590 + 2 NA intron (NM_018398, intron 13 of 37) intron (NM_018398, intron 13 of 37) 127780 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 144-50 chr2 211711316 211711451 + 2 NA intron (NM_001042599, intron 9 of 26) intron (NM_001042599, intron 9 of 26) 714977 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 284-408 chr8 88298978 88299191 + 2 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 28399 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 358-368 chr5 54596876 54597196 + 2 NA Intergenic L1PA10|LINE|L1 79277 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 332-160 chr14_GL000225v1_random 28792 29068 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 456-280 chr6 85281128 85281493 + 2 NA Intergenic L1MC5a|LINE|L1 108876 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 495-222 chr6 136858906 136859336 + 2 NA intron (NM_000288, intron 5 of 9) intron (NM_000288, intron 5 of 9) 36529 NM_000288 5191 Hs.280932 NM_000288 ENSG00000112357 PEX7 PBD9B|PTS2R|RCDP1|RD peroxisomal biogenesis factor 7 protein-coding 331-420 chr5 66226073 66226346 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -16763 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 234-134 chr17 60836480 60836667 + 2 NA intron (NM_001330413, intron 7 of 25) intron (NM_001330413, intron 7 of 25) 158722 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 380-70 chr11 87102537 87102745 + 2 NA intron (NM_001168724, intron 4 of 13) L1MA5|LINE|L1 64707 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 325-271 chr2 103354012 103354238 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -369696 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 304-244 chr2 34891550 34891808 + 2 NA Intergenic Intergenic 214122 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 324-306 chr20 13883161 13883453 + 2 NA intron (NM_001363752, intron 9 of 16) intron (NM_001363752, intron 9 of 16) 98279 NR_147978 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 293-305 chr4 82207479 82207718 + 2 NA Intergenic L1MA3|LINE|L1 166393 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 415-170 chr3 22150329 22150659 + 2 NA Intergenic Intergenic 193355 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 228-35 chr10 44500138 44500307 + 2 NA Intergenic L1MB7|LINE|L1 -115125 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 348-291 chr3 42315737 42315973 + 2 NA Intergenic L1PB4|LINE|L1 -49670 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 407-79 chr14 47368974 47369307 + 2 NA intron (NM_001113498, intron 1 of 16) L1ME4a|LINE|L1 -25894 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 351-286 chr3 5362116 5362404 + 2 NA Intergenic Intergenic -112005 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 393-90 chr14 34009399 34009717 + 2 NA Intergenic L1PA17|LINE|L1 -58484 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 248-89 chr12 83969373 83969540 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger 943343 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 151-26 chr14 67125875 67126000 + 2 NA intron (NM_001024218, intron 16 of 21) intron (NM_001024218, intron 16 of 21) -63503 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 119-60 chr8 87770982 87771098 + 2 NA Intergenic Intergenic 102975 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 311-272 chr2 146698491 146698723 + 2 NA Intergenic HERVL40-int|LTR|ERVL 111550 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 335-188 chr16 62415576 62415899 + 2 NA Intergenic L1MA4A|LINE|L1 -379299 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 290-452 chr8 90245947 90246186 + 2 NA intron (NR_051989, intron 1 of 3) intron (NR_051989, intron 1 of 3) 24578 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 318-259 chr2 49782302 49782525 + 2 NA Intergenic Intergenic 191790 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 404-337 chr9 16918750 16919059 + 2 NA Intergenic AluSx3|SINE|Alu -48234 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 366-245 chr20 117800 118073 + 2 NA Intergenic L1PA15-16|LINE|L1 -24654 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 359-11 chr1 68897336 68897610 + 2 NA Intergenic Intergenic -158425 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 177-97 chr21 21939353 21939522 + 2 NA Intergenic MER34|LTR|ERV1 159022 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 476-254 chr7 108170633 108170982 + 2 NA intron (NM_001371136, intron 25 of 28) L1MA9|LINE|L1 -40446 NM_001318048 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 324-424 chr5 36138102 36138288 + 2 NA intron (NM_001007527, intron 4 of 17) L2c|LINE|L2 9793 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 395-321 chr7 132432473 132432866 + 2 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 143801 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 389-184 chr2 132607909 132608208 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 62147 NM_001321235 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 187-96 chr20 52506991 52507132 + 2 NA Intergenic L1MA3|LINE|L1 -113777 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 277-190 chr2 57015902 57016061 + 2 NA Intergenic Intergenic -830211 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 601-95 chr3 121012515 121012898 + 2 NA intron (NR_145517, intron 3 of 8) L1PA17|LINE|L1 -36934 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 284-154 chr17 12137074 12137277 + 2 NA intron (NM_001281435, intron 10 of 11) L2a|LINE|L2 55276 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 144-25 chr14 28023535 28023649 + 2 NA Intergenic Intergenic -350371 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 353-76 chr11 15522205 15522449 + 2 NA Intergenic L1M5|LINE|L1 -121558 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 188-7 chr1 100662338 100662495 + 2 NA Intergenic Intergenic -15412 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 222-84 chr12 56830409 56830591 + 2 NA Intergenic Intergenic 67176 NM_003725 8630 Hs.524513 NM_003725 ENSG00000025423 HSD17B6 HSE|RODH|SDR9C6 hydroxysteroid 17-beta dehydrogenase 6 protein-coding 190-44 chr12 114327470 114327585 + 2 NA Intergenic Intergenic 78617 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 323-106 chr12 15732689 15732858 + 2 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 56615 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 348-173 chr16 62411294 62411514 + 2 NA Intergenic L1MA4A|LINE|L1 -374966 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 238-31 chr10 24139272 24139474 + 2 NA intron (NM_001098500, intron 2 of 18) L1ME4a|LINE|L1 -69418 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 619-77 chr20 56666088 56666561 + 2 NA Intergenic AluSc5|SINE|Alu 37018 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 728-94 chr7 52431818 52432537 + 2 NA Intergenic AluSc|SINE|Alu -603456 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 272-116 chr14 53905129 53905306 + 2 NA Intergenic L1MEc|LINE|L1 43267 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 287-227 chr20 61479931 61480183 + 2 NA intron (NM_001794, intron 2 of 15) L1MEc|LINE|L1 -19364 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 463-219 chr5 2532276 2532709 + 2 NA Intergenic Intergenic -180099 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 522-51 chr11 83993298 83993699 + 2 NA intron (NM_001142699, intron 11 of 27) intron (NM_001142699, intron 11 of 27) 279782 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 360-436 chr7 68810195 68810542 + 2 NA Intergenic Intergenic 787256 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 481-184 chr21 27295719 27296025 + 2 NA Intergenic Intergenic -328784 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 322-354 chr3 162993645 162993833 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 309562 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 248-135 chr15 99585714 99585930 + 2 NA intron (NM_001352616, intron 1 of 10) intron (NM_001352616, intron 1 of 10) 19339 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 238-230 chr3 27535467 27535675 + 2 NA Intergenic Intergenic -51187 NM_001321104 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 399-224 chr4 26079124 26079476 + 2 NA Intergenic MER53|DNA|hAT 165108 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 179-106 chr7 13444799 13444916 + 2 NA Intergenic Intergenic 541657 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 624-101 chr5 68612653 68613052 + 2 NA Intergenic L1MA4A|LINE|L1 320275 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 511-28 chr10 108455933 108456355 + 2 NA Intergenic Intergenic -386851 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 326-279 chr2 188865491 188865714 + 2 NA Intergenic L1PA8A|LINE|L1 -75479 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 235-331 chr7 54192862 54193042 + 2 NA Intergenic Intergenic -137745 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 152-67 chr4 24706774 24706856 + 2 NA Intergenic AluJr|SINE|Alu -88758 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 242-87 chr12 128510796 128510976 + 2 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 216794 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 311-259 chr2 84477318 84477600 + 2 NA Intergenic MER41A|LTR|ERV1 -18179 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 297-462 chr8 68679510 68679691 + 2 NA intron (NR_146187, intron 8 of 13) L1MA3|LINE|L1 -348109 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 310-163 chr16 3408153 3408436 + 2 NA intron (NM_003450, intron 2 of 2) intron (NM_003450, intron 2 of 2) 7079 NM_001347870 7727 Hs.155204 NM_003450 ENSG00000103343 ZNF174 ZSCAN8 zinc finger protein 174 protein-coding 291-449 chr8 83002045 83002202 + 2 NA Intergenic L1PB1|LINE|L1 90019 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 269-191 chr2 50400338 50400580 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -52703 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 482-64 chr12 33370941 33371293 + 2 NA Intergenic Intergenic 68702 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 389-370 chr8 122747220 122747503 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -34294 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 244-22 chr1 197705664 197705852 + 2 NA intron (NR_125340, intron 3 of 19) intron (NR_125340, intron 3 of 19) 69722 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 360-44 chr10 71016193 71016468 + 2 NA Intergenic L1MD2|LINE|L1 77277 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 310-24 chr1 184383218 184383405 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -3718 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 319-364 chr4 44207045 44207358 + 2 NA intron (NM_198353, intron 1 of 1) MIR|SINE|MIR 190139 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 316-343 chr3 39970648 39970903 + 2 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -129236 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 467-19 chr1 237295737 237296015 + 2 NA intron (NM_001035, intron 2 of 104) L2a|LINE|L2 -175243 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 334-53 chr10 44401627 44401849 + 2 NA Intergenic L1MCa|LINE|L1 -16641 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 254-75 chr12 20301066 20301253 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -68086 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 341-418 chr5 11089000 11089232 + 2 NA intron (NM_001364128, intron 12 of 19) MLT1J1|LTR|ERVL-MaLR -327882 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 563-123 chr3 81256006 81256518 + 2 NA Intergenic Intergenic 262394 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 308-142 chr14 57529195 57529471 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -35476 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 271-206 chr2 114571820 114571987 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 110326 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 332-317 chr3 29192150 29192446 + 2 NA Intergenic L1MA8|LINE|L1 88641 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 229-9 chr1 90186532 90186752 + 2 NA Intergenic Intergenic 191532 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 370-68 chr10 111536910 111537199 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 422763 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 440 chr1 5975249 5975535 + 2 NA intron (NM_001291594, intron 1 of 25) intron (NM_001291594, intron 1 of 25) 17033 NM_001291593 261734 Hs.462348 NM_015102 ENSG00000131697 NPHP4 POC10|SLSN4 nephrocystin 4 protein-coding 295-7 chr1 48561928 48562194 + 2 NA intron (NM_001323575, intron 11 of 12) Ricksha_c|DNA|MULE-MuDR -89853 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 558-182 chr5 161681566 161682052 + 2 NA Intergenic Intergenic -3912 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 394-215 chr3 86383843 86384188 + 2 NA Intergenic Intergenic -97928 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 249-375 chr7 17268099 17268290 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -30458 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 179-79 chr4 35166229 35166337 + 2 NA Intergenic Intergenic -896536 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 475-193 chr4 15265977 15266436 + 2 NA intron (NR_125911, intron 1 of 5) L1M2|LINE|L1 -73782 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 322-124 chr12 54999555 54999843 + 2 NA Intergenic Intergenic -14937 NR_147062 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 414-206 chr3 54290947 54291343 + 2 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 168593 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 237-114 chr14 87307989 87308218 + 2 NA Intergenic Intergenic 347191 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 202-6 chr1 91567053 91567248 + 2 NA Intergenic MIR|SINE|MIR 66042 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 383-413 chr9 76742657 76743027 + 2 NA intron (NM_001308048, intron 6 of 17) L1ME3G|LINE|L1 -21594 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 548-189 chr5 115051525 115052007 + 2 NA Intergenic MIRb|SINE|MIR 118142 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 224-75 chr13 89566224 89566425 + 2 NA Intergenic Intergenic -1911 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 353-84 chr11 57165184 57165414 + 2 NA Intergenic MIRb|SINE|MIR -16654 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 354-423 chr7 32012571 32012791 + 2 NA intron (NM_001322059, intron 3 of 17) L1ME1|LINE|L1 57726 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 351-169 chr17 33754324 33754635 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -220719 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 347-464 chr7 41065833 41066126 + 2 NA Intergenic Intergenic -35625 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 425-278 chr7 24621724 24622101 + 2 NA intron (NM_016447, intron 2 of 12) L1M4|LINE|L1 48460 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 112-17 chr16 79682829 79682902 + 2 NA Intergenic L1ME2z|LINE|L1 -82128 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 222-105 chr13 108653815 108653954 + 2 NA intron (NM_001198950, intron 1 of 34) LTR16A1|LTR|ERVL 24273 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 277-37 chr10 6902306 6902530 + 2 NA Intergenic Intergenic 122820 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 391-36 chr10 48482603 48482893 + 2 NA intron (NR_144642, intron 3 of 9) L1MA4A|LINE|L1 10902 NM_001256026 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 314-541 chr7 70996944 70997112 + 2 NA Intergenic MIR|SINE|MIR -135116 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 523-5 chr1 79882709 79883153 + 2 NA Intergenic MIRb|SINE|MIR -652824 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 336-541 chr8 79724062 79724383 + 2 NA Intergenic MamRep605|LTR?|LTR? 42253 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 667-91 chr5 131056479 131056951 + 2 NA Intergenic L1MA9|LINE|L1 108541 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 350-518 chr8 91705053 91705323 + 2 NA Intergenic Intergenic 312492 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 196-67 chr14 44098653 44098784 + 2 NA Intergenic Intergenic 408565 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 392-333 chr8 124569118 124569401 + 2 NA intron (NM_001363294, intron 6 of 13) intron (NM_001363294, intron 6 of 13) 30136 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 377-208 chr2 107255344 107255579 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 94064 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 340-276 chr2 123670608 123670794 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 354473 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 294-388 chr5 123413262 123413525 + 2 NA intron (NM_153223, intron 4 of 20) intron (NM_153223, intron 4 of 20) 10199 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 281-394 chr6 90802979 90803220 + 2 NA Intergenic MIRc|SINE|MIR -216027 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 333-604 chr9 76330882 76331196 + 2 NA intron (NM_001190482, intron 32 of 36) intron (NM_001190482, intron 32 of 36) 63387 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 143-75 chr7 33566589 33566705 + 2 NA intron (NR_145411, intron 22 of 23) intron (NR_145411, intron 22 of 23) -338268 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 466-190 chr4 142684582 142684987 + 2 NA intron (NM_003866, intron 2 of 26) intron (NM_003866, intron 2 of 26) 161751 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 327-100 chr11 121946824 121947053 + 2 NA Intergenic LOR1b|LTR|ERV1 152906 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 288-432 chr8 27786997 27787251 + 2 NA intron (NM_001017420, intron 5 of 10) MER102b|DNA|hAT-Charlie 12570 NM_001017420 157570 Hs.99480 NM_001017420 ENSG00000171320 ESCO2 2410004I17Rik|EFO2|EFO2p|RBS|hEFO2 establishment of sister chromatid cohesion N-acetyltransferase 2 protein-coding 271-191 chr2 23633451 23633666 + 2 NA intron (NM_052920, intron 3 of 13) MLT1H1|LTR|ERVL-MaLR 248379 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 295-421 chr6 161705156 161705306 + 2 NA intron (NM_004562, intron 7 of 11) MER47A|DNA|TcMar-Tigger 234254 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 392-219 chr3 183565776 183566047 + 2 NA Intergenic L2c|LINE|L2 -10205 NM_130446 89857 Hs.659147 NM_130446 ENSG00000172578 KLHL6 - kelch like family member 6 protein-coding 237-131 chr16 49825289 49825465 + 2 NA intron (NM_001271620, intron 1 of 7) intron (NM_001271620, intron 1 of 7) -2639 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 258-47 chr10 33221655 33221886 + 2 NA exon (NM_001330068, exon 8 of 16) exon (NM_001330068, exon 8 of 16) -104963 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 406-93 chr14 101165938 101166289 + 2 NA Intergenic L1MC3|LINE|L1 45257 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 373-320 chr5 54337085 54337323 + 2 NA intron (NR_126379, intron 1 of 4) L1M2|LINE|L1 16260 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 556-104 chr2 100848537 100849014 + 2 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 28636 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 206-16 chr1 164889526 164889668 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -114956 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 441-261 chr8 68168053 68168343 + 2 NA intron (NM_024870, intron 35 of 39) intron (NM_024870, intron 35 of 39) -162175 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 593-45 chr14 54101028 54101570 + 2 NA Intergenic Intergenic -144408 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 447 chr1 5311027 5311308 + 2 NA Intergenic Intergenic 551574 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 410-308 chr8 93612998 93613322 + 2 NA intron (NR_033858, intron 5 of 10) L2a|LINE|L2 87273 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 626-103 chr4 77321435 77321943 + 2 NA Intergenic L1PA5|LINE|L1 164482 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 370-351 chr4 82017270 82017635 + 2 NA Intergenic Intergenic 356539 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 804-30 chr2 48807632 48808416 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -52300 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 217-365 chr8 87780882 87781081 + 2 NA Intergenic L1M2|LINE|L1 93034 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 543-123 chr2 53105227 53105704 + 2 NA Intergenic Intergenic -402850 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 327-460 chr7 62785592 62785825 + 2 NA Intergenic ALR/Alpha|Satellite|centr 518348 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 302-332 chr4 90891432 90891684 + 2 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 656527 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 432-297 chr9 28287119 28287516 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 431988 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 360-444 chr7 114639617 114639889 + 2 NA intron (NR_033767, intron 7 of 17) L2a|LINE|L2 -13592 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 255 chr1 5184554 5184745 + 2 NA Intergenic L2c|LINE|L2 530040 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 745-9 chr12 5053138 5053555 + 2 NA Intergenic Intergenic 9467 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 406-322 chrX 83571380 83571600 + 2 NA Intergenic L1MB4|LINE|L1 63200 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 331-436 chr5 135163903 135164088 + 2 NA intron (NR_161235, intron 2 of 5) intron (NR_161235, intron 2 of 5) 84182 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 160-75 chr4 61391489 61391624 + 2 NA intron (NM_001371343, intron 2 of 23) L1ME1|LINE|L1 189384 NM_001371342 420-214 chr4 155279472 155279856 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 71028 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 387-275 chr5 43841435 43841786 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -238380 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 444-244 chr7 84039771 84040049 + 2 NA intron (NM_006080, intron 6 of 16) intron (NM_006080, intron 6 of 16) 154879 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 494-235 chr5 121015130 121015449 + 2 NA Intergenic AluSg|SINE|Alu -307261 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 368-426 chr7 62872297 62872623 + 2 NA Intergenic ALR/Alpha|Satellite|centr 431596 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 171-100 chr5 17975183 17975315 + 2 NA Intergenic Intergenic 167975 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 410-150 chr2 161760725 161761016 + 2 NA intron (NM_001354443, intron 2 of 25) L1P5|LINE|L1 136454 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 301-49 chr10 93813284 93813540 + 2 NA Intergenic Intergenic 55476 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 343-256 chr2 114065850 114066025 + 2 NA Intergenic Intergenic -85953 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 324-154 chr14 46745891 46746110 + 2 NA Intergenic L1MEc|LINE|L1 -94219 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 259-25 chr1 197942949 197943203 + 2 NA Intergenic Intergenic 25704 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 147-17 chr13 65910785 65910866 + 2 NA Intergenic Intergenic 44778 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 498-14 chr1 209284949 209285423 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -40270 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 177-86 chr2 219542922 219543011 + 2 NA promoter-TSS (NM_001303098) promoter-TSS (NM_001303098) 131 NM_001195731 79586 Hs.516711 NM_024536 ENSG00000123989 CHPF CHSY2|CSS2 chondroitin polymerizing factor protein-coding 228-39 chr10 61939794 61939979 + 2 NA intron (NM_032199, intron 2 of 9) intron (NM_032199, intron 2 of 9) 38187 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 233-392 chr8 137445368 137445596 + 2 NA Intergenic L1MA9|LINE|L1 -31894 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 442-280 chr7 145504096 145504406 + 2 NA Intergenic Intergenic -668198 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 327-522 chr9 73636839 73637085 + 2 NA Intergenic L1M4|LINE|L1 485097 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 320-51 chr10 24436207 24436407 + 2 NA intron (NM_019590, intron 4 of 20) intron (NM_019590, intron 4 of 20) -13107 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 505-220 chr4 80514442 80514749 + 2 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 178875 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 338-600 chrX 5176904 5177202 + 2 NA Intergenic MIRb|SINE|MIR -543481 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 449-168 chr3 81268277 81268612 + 2 NA Intergenic Intergenic 274576 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 941-30 chr8 43830962 43831713 + 2 NA Intergenic ALR/Alpha|Satellite|centr 538895 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 315-529 chrX 75954069 75954259 + 2 NA Intergenic L1PB1|LINE|L1 -168910 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 306-166 chr15 72939261 72939490 + 2 NA Intergenic LTR85c|LTR|Gypsy? -113088 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 387-401 chrX 70898314 70898534 + 2 NA intron (NM_001003811, intron 2 of 30) L2c|LINE|L2 10287 NM_001003811 56159 Hs.121776 NM_031276 ENSG00000120498 TEX11 SPGFX2|TGC1|TSGA3 testis expressed 11 protein-coding 196-140 chr2 181113387 181113579 + 2 NA Intergenic Intergenic -10354 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 265-293 chr5 6213034 6213239 + 2 NA Intergenic Intergenic 124156 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 263-441 chr9 13819443 13819619 + 2 NA Intergenic L1MC5|LINE|L1 -108440 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 320-341 chr3 38938268 38938515 + 2 NA intron (NM_014139, intron 3 of 25) intron (NM_014139, intron 3 of 25) 12170 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 135-46 chr3 68255212 68255299 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -245382 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 304-325 chr3 17056751 17056952 + 2 NA intron (NM_015184, intron 4 of 5) intron (NM_015184, intron 4 of 5) 123655 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 186-168 chr8 130584409 130584552 + 2 NA Intergenic LTR40a|LTR|ERVL -140806 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 354-470 chr8 105057010 105057217 + 2 NA Intergenic L1ME3A|LINE|L1 -261325 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 393-105 chr14 78535773 78536067 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 132201 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 594-93 chr3 117329534 117329997 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 361160 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 250-375 chr6 66553030 66553205 + 2 NA Intergenic L1PB4|LINE|L1 765238 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 569-5 chr1 81492979 81493447 + 2 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) 64489 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 593-95 chr22 47244285 47244692 + 2 NA Intergenic L1MEf|LINE|L1 -101083 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 324-213 chr16 82344870 82345132 + 2 NA Intergenic MIR|SINE|MIR -174777 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 550-250 chrX 66251067 66251471 + 2 NA intron (NM_001367241, intron 15 of 18) L1MD2|LINE|L1 83519 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 176-39 chr16 62548706 62548824 + 2 NA Intergenic L2a|LINE|L2 -512327 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 331-41 chr10 11135672 11135977 + 2 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) -29057 NM_001326349 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 507-238 chr7 114308641 114309058 + 2 NA intron (NR_033766, intron 2 of 19) HERVL40-int|LTR|ERVL -105966 NR_033767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 392-168 chr2 229797210 229797533 + 2 NA intron (NM_001348330, intron 24 of 41) intron (NM_001348330, intron 24 of 41) -82816 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 303-21 chr1 222170768 222170920 + 2 NA Intergenic L1PA16|LINE|L1 -192324 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 446-74 chr12 26357083 26357499 + 2 NA intron (NM_002223, intron 55 of 56) MER21C|LTR|ERVL 161718 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 480-128 chr18 78272075 78272381 + 2 NA Intergenic L1ME3E|LINE|L1 -278501 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 315-415 chr6 40282613 40282885 + 2 NA Intergenic Intergenic 73257 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 677-71 chr6 91056031 91056484 + 2 NA Intergenic L1MA4|LINE|L1 -465403 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 346-216 chr19 29634473 29634651 + 2 NA Intergenic L1ME3A|LINE|L1 28279 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 430-240 chr5 40958065 40958423 + 2 NA exon (NM_000587, exon 11 of 18) exon (NM_000587, exon 11 of 18) 48747 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 802-2 chr1 114747569 114748251 + 2 NA intron (NM_001130523, intron 2 of 19) intron (NM_001130523, intron 2 of 19) 10074 NM_001242892 7812 Hs.69855 NM_007158 ENSG00000009307 CSDE1 D1S155E|UNR cold shock domain containing E1 protein-coding 317-423 chr6 105889558 105889839 + 2 NA Intergenic Intergenic -196638 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 339-279 chr2 137761961 137762221 + 2 NA Intergenic L1PA15|LINE|L1 165841 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 379-105 chr15 87110279 87110480 + 2 NA Intergenic L1MA4A|LINE|L1 -121953 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 571-55 chr16 10594342 10594727 + 2 NA Intergenic Intergenic -13936 NM_001424 2013 Hs.531561 NM_001424 ENSG00000213853 EMP2 XMP epithelial membrane protein 2 protein-coding 465-310 chr8 140356887 140357185 + 2 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 100708 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 286-318 chr4 75781925 75782159 + 2 NA intron (NM_003715, intron 8 of 23) L2|LINE|L2 57520 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 235-275 chr5 16965888 16966071 + 2 NA Intergenic Intergenic -29691 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 335-21 chr1 112782732 112782975 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 62286 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 199-183 chr4 100907232 100907376 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -232191 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 398-5 chr1 57199600 57199897 + 2 NA intron (NM_001353980, intron 5 of 5) MIRb|SINE|MIR 223364 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 505-23 chr1 232026244 232026661 + 2 NA non-coding (NR_028393, exon 15 of 16) non-coding (NR_028393, exon 15 of 16) 100618 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 415-259 chr7 106874664 106874951 + 2 NA intron (NM_001282426, intron 5 of 10) intron (NM_001282426, intron 5 of 10) 9328 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 386-201 chr20 4011706 4011970 + 2 NA intron (NM_001134338, intron 1 of 6) HAL1|LINE|L1 3720 NM_001134338 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 446-241 chr5 74322395 74322739 + 2 NA promoter-TSS (NR_105010) promoter-TSS (NR_105010) 81 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 249-55 chr10 68118301 68118466 + 2 NA intron (NM_001256268, intron 2 of 23) MIRb|SINE|MIR 8895 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 472-159 chr2 106040648 106040967 + 2 NA Intergenic Intergenic -24881 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 413-16 chr1 117847582 117847957 + 2 NA Intergenic Intergenic 81852 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 487-14 chr1 99099495 99099812 + 2 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -94792 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 218-253 chr4 174963970 174964099 + 2 NA intron (NM_001278126, intron 5 of 5) intron (NM_001278126, intron 5 of 5) 45676 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 380-393 chr8 77865208 77865442 + 2 NA Intergenic Intergenic 414628 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 182-161 chr7 11605922 11606085 + 2 NA intron (NM_015204, intron 2 of 26) LTR67B|LTR|ERVL 226195 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 209-3 chr1 60591186 60591340 + 2 NA intron (NR_146508, intron 3 of 7) L3|LINE|CR1 31422 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 770-72 chr8 134512623 134513358 + 2 NA intron (NM_020863, intron 13 of 15) intron (NM_020863, intron 13 of 15) -85081 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 321-455 chr5 33416284 33416504 + 2 NA Intergenic Intergenic -24302 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 308-488 chr8 65554723 65554893 + 2 NA intron (NR_033893, intron 1 of 4) intron (NR_033893, intron 1 of 4) 7858 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 266-169 chr2 18621829 18621988 + 2 NA Intergenic Intergenic -32328 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 347-515 chr8 89284513 89284721 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 473094 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 301-426 chr7 88310524 88310743 + 2 NA Intergenic Intergenic -3739 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 295-94 chr12 22947304 22947569 + 2 NA Intergenic LTR16C|LTR|ERVL -228200 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 175-68 chr18 22032190 22032320 + 2 NA Intergenic Intergenic 136713 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 341-40 chr1 208378911 208379162 + 2 NA Intergenic Intergenic -134652 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 689-2 chr1 41215528 41216138 + 2 NA intron (NM_001172218, intron 1 of 15) L2c|LINE|L2 26473 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 326-164 chr15 41335327 41335530 + 2 NA intron (NM_001243144, intron 1 of 8) intron (NM_001243144, intron 1 of 8) 2547 NM_001301136 51203 Hs.615092 NM_016359 ENSG00000137804 NUSAP1 ANKT|BM037|LNP|NUSAP|PRO0310p1|Q0310|SAPL nucleolar and spindle associated protein 1 protein-coding 282-113 chr13 64582367 64582556 + 2 NA Intergenic Intergenic -506450 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 303-258 chr21 17965632 17965885 + 2 NA intron (NM_001204177, intron 1 of 4) L2c|LINE|L2 48418 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 589-14 chr10 130398555 130399041 + 2 NA Intergenic LTR1B1|LTR|ERV1 262389 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 307-315 chr3 145357675 145357837 + 2 NA Intergenic LTR10B2|LTR|ERV1 711429 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 304-179 chr16 51375998 51376161 + 2 NA intron (NR_039672, intron 6 of 6) AluJb|SINE|Alu -224807 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 307-51 chr10 44216913 44217176 + 2 NA Intergenic L1MEg|LINE|L1 -75706 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 505-3 chr1 49974925 49975383 + 2 NA intron (NM_001323575, intron 1 of 12) intron (NM_001323575, intron 1 of 12) 48800 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 457-129 chr2 192879589 192879943 + 2 NA Intergenic Intergenic 129921 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 229-232 chr20 58525765 58525891 + 2 NA intron (NR_034147, intron 5 of 6) intron (NR_034147, intron 5 of 6) -10429 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 427-101 chr18 71952145 71952541 + 2 NA Intergenic L1M4b|LINE|L1 -170117 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 301-248 chr20 12477417 12477601 + 2 NA Intergenic L1PA5|LINE|L1 459454 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 125-49 chr4 166363197 166363304 + 2 NA Intergenic L1M4|LINE|L1 490013 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 223-36 chr10 56639224 56639396 + 2 NA Intergenic L1PA10|LINE|L1 -278037 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 267-93 chr12 119518848 119519023 + 2 NA intron (NM_178499, intron 8 of 13) intron (NM_178499, intron 8 of 13) -74839 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 238-415 chr9 74330236 74330447 + 2 NA Intergenic Intergenic -41190 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 206-285 chr9 82352523 82352683 + 2 NA Intergenic Intergenic 363831 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 556-171 chr5 11564100 11564566 + 2 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 24584 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 294-317 chr3 192539549 192539762 + 2 NA intron (NM_004113, intron 2 of 5) L1MA3|LINE|L1 24633 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 483-5 chr1 57761083 57761382 + 2 NA intron (NM_001353980, intron 3 of 5) MER113|DNA|hAT-Charlie -99349 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 247-78 chr12 14391113 14391305 + 2 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 5928 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 141-69 chr4 143177251 143177333 + 2 NA TTS (NR_136203) TTS (NR_136203) 7569 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 684-17 chr10 98067300 98067689 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -36666 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 232-134 chr17 69449163 69449379 + 2 NA intron (NM_002758, intron 1 of 11) (ATATAC)n|Simple_repeat|Simple_repeat 34574 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 539-76 chr15 27650839 27651281 + 2 NA Intergenic L1MB3|LINE|L1 448255 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 164-72 chr22 49181151 49181282 + 2 NA Intergenic (ATATGT)n|Simple_repeat|Simple_repeat 314446 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 266-457 chrX 56921437 56921630 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 74008 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 231-254 chr4 61770663 61770822 + 2 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 391023 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 301-445 chr8 63717353 63717583 + 2 NA Intergenic Intergenic -51962 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 397-324 chr8 19710276 19710571 + 2 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) -27662 NR_024040 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 253-430 chr9 74099912 74100062 + 2 NA Intergenic Intergenic -271544 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 298-111 chr14 31673060 31673316 + 2 NA intron (NM_001201573, intron 2 of 8) L1MA7|LINE|L1 -41381 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 396-260 chr4 132245293 132245575 + 2 NA Intergenic Intergenic -345655 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 319-63 chr10 64430341 64430601 + 2 NA Intergenic Intergenic -395057 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 414-176 chr2 207420392 207420694 + 2 NA Intergenic Intergenic -109419 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 437-93 chr16 9491659 9491997 + 2 NA Intergenic Intergenic -36323 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 305-282 chr2 177408731 177409024 + 2 NA intron (NM_003659, intron 1 of 19) intron (NM_003659, intron 1 of 19) 16104 NM_003659 8540 Hs.516543 NM_003659 ENSG00000018510 AGPS ADAP-S|ADAS|ADHAPS|ADPS|ALDHPSY|RCDP3 alkylglycerone phosphate synthase protein-coding 631-22 chr10 86014392 86014734 + 2 NA intron (NM_017551, intron 4 of 15) ERVL-E-int|LTR|ERVL 250225 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 331-380 chr4 63554932 63555117 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 854426 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 510-66 chr12 125540140 125540578 + 2 NA intron (NM_052907, intron 4 of 8) L1M5|LINE|L1 -82093 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 554-7 chr1 71643027 71643348 + 2 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 193825 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 624-129 chr9 28235628 28236182 + 2 NA intron (NM_152570, intron 5 of 6) L1M1|LINE|L1 483400 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 322-363 chr4 30534726 30534936 + 2 NA Intergenic LTR32|LTR|ERVL -185538 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 330-373 chr4 28645248 28645450 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -174233 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 276-323 chr4 29745334 29745534 + 2 NA Intergenic L1MCa|LINE|L1 531142 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 521-231 chr7 46704032 46704383 + 2 NA Intergenic AluSx1|SINE|Alu -7085 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 402-114 chr17 68669120 68669386 + 2 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 41099 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 378-40 chr1 225434962 225435238 + 2 NA Intergenic MIRc|SINE|MIR -6245 NM_194442 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 653-22 chr11 39837378 39837851 + 2 NA Intergenic Intergenic 455516 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 246-272 chr3 118100731 118100912 + 2 NA Intergenic Intergenic -409896 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 321-96 chr11 37253992 37254186 + 2 NA Intergenic Intergenic -655810 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 230-298 chr5 63140276 63140485 + 2 NA Intergenic L1M5|LINE|L1 561561 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 424-239 chr6 39670183 39670426 + 2 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 55104 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 287-395 chr8 43429863 43430021 + 2 NA Intergenic LTR9D|LTR|ERV1 137500 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 397-183 chr20 2517034 2517369 + 2 NA intron (NM_001282495, intron 1 of 6) intron (NM_001282495, intron 1 of 6) 7321 NM_001282495 79175 Hs.516846 NM_024325 ENSG00000088876 ZNF343 dJ734P14.5 zinc finger protein 343 protein-coding 479-244 chr8 71794290 71794720 + 2 NA Intergenic Intergenic -48618 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 307-140 chr14 56925296 56925497 + 2 NA intron (NR_029385, intron 3 of 3) intron (NR_029385, intron 3 of 3) 112238 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 202-7 chr1 154197752 154197887 + 2 NA Intergenic MIRb|SINE|MIR -4076 NR_030600 100126346 NR_030600 ENSG00000215938 MIR190B MIRN190B|mir-190b microRNA 190b ncRNA 552-116 chr2 214286675 214287180 + 2 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -124127 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 195-213 chr6 56401082 56401234 + 2 NA Intergenic L1M4a2|LINE|L1 -7030 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 424-220 chr5 46274227 46274567 + 2 NA Intergenic ALR/Alpha|Satellite|centr -578017 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 353-498 chr7 107836282 107836514 + 2 NA Intergenic Intergenic -33165 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 198-3 chr1 36900922 36901051 + 2 NA intron (NM_000831, intron 1 of 15) L1MC1|LINE|L1 133529 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 367-371 chr5 141267654 141267944 + 2 NA Intergenic Intergenic 22404 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 1209-6 chr2 211543913 211544703 + 2 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 882052 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 357-487 chr9 96104490 96104798 + 2 NA Intergenic L1M4b|LINE|L1 11767 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 418-271 chr7 111784855 111785221 + 2 NA intron (NM_001363540, intron 32 of 52) intron (NM_001363540, intron 32 of 52) -23467 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 505-90 chr14 83947457 83947821 + 2 NA Intergenic L1MA4A|LINE|L1 1305007 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 384-292 chr5 53391231 53391467 + 2 NA Intergenic L1MCa|LINE|L1 -89280 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 471-206 chr5 53708454 53708767 + 2 NA Intergenic L1PA11|LINE|L1 111072 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 259-365 chr7 22930816 22931032 + 2 NA Intergenic L1M4b|LINE|L1 74311 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 496-11 chr1 70330784 70331221 + 2 NA intron (NM_030816, intron 2 of 12) intron (NM_030816, intron 2 of 12) 23720 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 334-465 chr6 103717390 103717620 + 2 NA Intergenic Intergenic 1142041 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 294-461 chr8 58235979 58236255 + 2 NA Intergenic Intergenic 35984 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 355-292 chr21 27301195 27301439 + 2 NA Intergenic Intergenic -334229 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 433 chr1 15708927 15709302 + 2 NA intron (NM_015164, intron 1 of 19) MIR|SINE|MIR 24794 NM_015164 23207 Hs.646775 NM_015164 ENSG00000116786 PLEKHM2 SKIP pleckstrin homology and RUN domain containing M2 protein-coding 307-117 chr13 37366674 37366970 + 2 NA Intergenic Intergenic 117962 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 388-111 chr14 62782190 62782391 + 2 NA intron (NM_139318, intron 9 of 10) intron (NM_139318, intron 9 of 10) 263168 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 226-201 chr20 48344140 48344352 + 2 NA Intergenic Intergenic -15665 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 367-340 chr5 4257908 4258166 + 2 NA Intergenic Intergenic -515444 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 196-111 chr2 12877481 12877637 + 2 NA Intergenic L1MB8|LINE|L1 129454 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 271-253 chr22 43971532 43971746 + 2 NA intron (NM_015380, intron 4 of 14) intron (NM_015380, intron 4 of 14) 16197 NM_015380 25813 Hs.505824 NM_015380 ENSG00000100347 SAMM50 CGI-51|OMP85|SAM50|TOB55|TRG-3|YNL026W SAMM50 sorting and assembly machinery component protein-coding 268-393 chr8 51350769 51350961 + 2 NA intron (NM_144651, intron 19 of 22) LTR9C|LTR|ERV1 458580 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 303-251 chr20 40525578 40525834 + 2 NA Intergenic L2b|LINE|L2 163530 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 554-120 chr2 123901738 123902173 + 2 NA Intergenic Intergenic 123219 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 393-10 chr1 68553478 68553796 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -56555 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 334-191 chr16 27280260 27280455 + 2 NA intron (NR_037184, intron 1 of 4) L1P1|LINE|L1 -11585 NM_145080 197370 Hs.284295 NM_145080 ENSG00000169189 NSMCE1 NSE1 NSE1 homolog, SMC5-SMC6 complex component protein-coding 194-182 chr6 54737773 54737880 + 2 NA Intergenic L1M5|LINE|L1 -108945 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 388-48 chr10 76166731 76166982 + 2 NA intron (NM_001305581, intron 5 of 6) L1PREC2|LINE|L1 384095 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 341-79 chr11 30068322 30068531 + 2 NA Intergenic L1MB7|LINE|L1 -51396 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 711-54 chr5 5225780 5226319 + 2 NA intron (NM_139056, intron 11 of 22) MER4CL34|LTR|ERV1 85719 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 706-69 chr7 18268905 18269423 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -20928 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 317-506 chr8 131123634 131123898 + 2 NA Intergenic Intergenic -82857 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 218-25 chr10 39068407 39068580 + 2 NA Intergenic ALR/Alpha|Satellite|centr 371897 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 893-24 chr2 45527107 45527876 + 2 NA intron (NM_018079, intron 14 of 20) L2c|LINE|L2 83776 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 327-401 chr5 72602603 72602878 + 2 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 45663 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 290-261 chr22 23290004 23290275 + 2 NA intron (NM_004327, intron 13 of 22) intron (NM_004327, intron 13 of 22) 27372 NR_033408 26226 Hs.729589 NR_033408 ENSG00000230701 FBXW4P1 FBW3|FBXW3|SHFM3P1 F-box and WD repeat domain containing 4 pseudogene 1 pseudo 510-68 chr13 53638134 53638525 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -177090 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 177-108 chr4 30596865 30596975 + 2 NA Intergenic MIRb|SINE|MIR -123449 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 343-157 chr15 49540860 49541055 + 2 NA intron (NM_001330293, intron 9 of 10) intron (NM_001330293, intron 9 of 10) 79861 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 200-190 chr4 78729379 78729556 + 2 NA Intergenic AluSx1|SINE|Alu -46883 NM_017593 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 190-53 chr14 33704757 33704870 + 2 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) -4124 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 661-86 chr7 8251277 8251714 + 2 NA intron (NM_001350826, intron 1 of 14) intron (NM_001350826, intron 1 of 14) 10557 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 408-70 chr11 98448625 98448894 + 2 NA Intergenic Intergenic -572190 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 245-44 chr10 54257071 54257308 + 2 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -229041 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 326-14 chr1 76171236 76171429 + 2 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 96586 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 410-272 chr6 168167110 168167419 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 59253 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 349-267 chr2 113673025 113673358 + 2 NA Intergenic MER34A|LTR|ERV1 45925 NM_001354424 11159 Hs.446425 NM_007082 ENSG00000144134 RABL2A - RAB, member of RAS oncogene family like 2A protein-coding 309-232 chr2 5212984 5213149 + 2 NA Intergenic Intergenic 478052 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 256-412 chr8 67696654 67696840 + 2 NA intron (NM_020361, intron 1 of 10) L1ME1|LINE|L1 49613 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 308-434 chr6 140872868 140873160 + 2 NA Intergenic L1MC5|LINE|L1 189200 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 259-30 chr1 237654954 237655160 + 2 NA intron (NM_001035, intron 52 of 104) intron (NM_001035, intron 52 of 104) 183938 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 335-557 chr9 6401634 6401835 + 2 NA Intergenic Intergenic -11417 NR_046386 115426 Hs.493401 NM_152896 ENSG00000147854 UHRF2 NIRF|RNF107|TDRD23|URF2 ubiquitin like with PHD and ring finger domains 2 protein-coding 183-67 chr2 20526090 20526233 + 2 NA Intergenic MIRb|SINE|MIR -24637 NR_157978 107985856 NR_157978 LOC107985856 - uncharacterized LOC107985856 ncRNA 295-446 chr7 87831744 87831951 + 2 NA 3' UTR (NM_001134405, exon 11 of 11) 3' UTR (NM_001134405, exon 11 of 11) 44513 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 427-276 chr9 78485391 78485711 + 2 NA Intergenic Intergenic 188426 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 357-73 chr11 105151086 105151330 + 2 NA Intergenic L1MC5a|LINE|L1 -11439 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 369-121 chr14 72863186 72863434 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 29339 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 219-313 chr6 64679505 64679715 + 2 NA intron (NM_001292009, intron 22 of 43) L1MC5a|LINE|L1 -621808 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 325-137 chr12 99676187 99676470 + 2 NA intron (NM_152788, intron 8 of 25) intron (NM_152788, intron 8 of 25) 28575 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 358-502 chr8 136567349 136567540 + 2 NA intron (NR_147196, intron 2 of 5) L1P4|LINE|L1 36646 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 401-187 chr20 22660213 22660566 + 2 NA Intergenic Intergenic 24955 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 391-312 chr6 118130987 118131312 + 2 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 45246 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 300-207 chr2 114922048 114922222 + 2 NA intron (NM_001321910, intron 2 of 26) L1MB7|LINE|L1 -88587 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 523-59 chr11 124246507 124246867 + 2 NA Intergenic L1M5|LINE|L1 -2989 NM_001002905 26494 Hs.448172 NM_001002905 ENSG00000197849 OR8G1 HSTPCR25|OR8G1P|TPCR25 olfactory receptor family 8 subfamily G member 1 (gene/pseudogene) protein-coding 470-73 chr14 60957661 60957912 + 2 NA intron (NM_001177963, intron 6 of 6) L1M1|LINE|L1 23293 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 173-7 chr1 167177715 167177848 + 2 NA intron (NR_110811, intron 3 of 3) MLT1A0-int|LTR|ERVL-MaLR 18024 NR_110811 101928484 Hs.568496 NR_110811 LINC01363 RBSG4 long intergenic non-protein coding RNA 1363 ncRNA 281-51 chr10 113432897 113433131 + 2 NA Intergenic Intergenic -117817 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 200-241 chr6 120695063 120695221 + 2 NA Intergenic Intergenic 639338 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 587-148 chr7 14859545 14860122 + 2 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) -18383 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 321-535 chr7 106870750 106871059 + 2 NA intron (NM_001282426, intron 2 of 10) intron (NM_001282426, intron 2 of 10) 5425 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 314-226 chr17 58904241 58904424 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 148463 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 325-573 chr9 71073843 71074061 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 47669 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 367-494 chrX 116773561 116773762 + 2 NA Intergenic L1PB1|LINE|L1 44199 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 335-470 chr6 118575216 118575485 + 2 NA intron (NM_001042475, intron 2 of 12) HERVIP10B3-int|LTR|ERV1 27054 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 455-230 chr5 100800316 100800667 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 16074 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 523-8 chr1 91103740 91104150 + 2 NA Intergenic Intergenic -81690 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 547-97 chr2 47987074 47987578 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -81533 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 388-312 chr6 132101718 132101960 + 2 NA Intergenic (TCC)n|Simple_repeat|Simple_repeat 13424 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 297-531 chrX 144814804 144815056 + 2 NA Intergenic L1M1|LINE|L1 -432573 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 501-225 chr6 17363664 17364067 + 2 NA Intergenic L1ME1|LINE|L1 -29640 NM_001363533 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 358-121 chr14 69865258 69865457 + 2 NA Intergenic MLT2B4|LTR|ERVL -14059 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 381-400 chr8 141822653 141822935 + 2 NA Intergenic L2|LINE|L2 -36481 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 368-360 chr5 50790475 50790731 + 2 NA intron (NM_024615, intron 10 of 25) intron (NM_024615, intron 10 of 25) 123189 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 206-169 chr3 118220091 118220251 + 2 NA Intergenic Intergenic -421597 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 301-139 chr15 87125352 87125596 + 2 NA Intergenic Intergenic -137048 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 420-169 chr21 23543087 23543351 + 2 NA Intergenic Intergenic -158384 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 588-120 chr5 3597612 3598060 + 2 NA intron (NM_024337, intron 1 of 3) CpG-21939 2004 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 402-96 chr15 63328018 63328283 + 2 NA intron (NM_001218, intron 8 of 10) intron (NM_001218, intron 8 of 10) 50545 NM_031301 83464 Hs.511703 NM_031301 ENSG00000138613 APH1B APH-1B|PRO1328|PSFL|TAAV688 aph-1 homolog B, gamma-secretase subunit protein-coding 363-184 chr17 79472768 79473022 + 2 NA intron (NM_001082575, intron 2 of 14) MER5C|DNA|hAT-Charlie 43253 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 202-10 chr1 170997765 170997937 + 2 NA intron (NM_001163629, intron 14 of 21) intron (NM_001163629, intron 14 of 21) 62317 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 251-333 chr6 61614166 61614363 + 2 NA intron (NR_146870, intron 13 of 15) intron (NR_146870, intron 13 of 15) 40134 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 331-551 chr9 29198274 29198481 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 13922 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 275-135 chr16 78924364 78924558 + 2 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 676276 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 522-224 chr6 120480911 120481254 + 2 NA Intergenic L1M5|LINE|L1 465903 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 180-106 chr3 50393702 50393840 + 2 NA intron (NM_001291101, intron 4 of 37) intron (NM_001291101, intron 4 of 37) 28408 NR_111913 11068 Hs.149443 NM_007022 ENSG00000114395 CYB561D2 101F6|TSP10|XXcos-LUCA11.4 cytochrome b561 family member D2 protein-coding 332-261 chr2 119612372 119612565 + 2 NA intron (NR_073132, intron 14 of 24) THE1C|LTR|ERVL-MaLR -66699 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 228-307 chr7 9055284 9055469 + 2 NA Intergenic L1MA9|LINE|L1 -578894 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 488-151 chr2 185578121 185578583 + 2 NA Intergenic Intergenic 160367 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 553-240 chr8 125346049 125346435 + 2 NA intron (NM_001349486, intron 5 of 7) L2c|LINE|L2 -84116 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 230-139 chr16 61981317 61981503 + 2 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 55028 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 498-91 chr14 85386512 85386854 + 2 NA promoter-TSS (NR_135155) promoter-TSS (NR_135155) -592 NR_135155 105370605 NR_135155 ENSG00000258814 LINC02329 - long intergenic non-protein coding RNA 2329 ncRNA 327-165 chr15 27507271 27507471 + 2 NA intron (NM_033223, intron 6 of 9) AluSx|SINE|Alu -346052 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 133-39 chr20 19394141 19394271 + 2 NA intron (NM_020689, intron 2 of 16) L1MB2|LINE|L1 -109610 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 349-313 chr22 33753618 33753888 + 2 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) 28767 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 311-82 chr11 82057069 82057310 + 2 NA intron (NR_120571, intron 5 of 7) MER44A|DNA|TcMar-Tigger -166353 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 248-164 chr19 53511867 53512067 + 2 NA Intergenic Intergenic -9047 NM_001317120 55422 Hs.185674 NM_018555 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 577-56 chr13 111950286 111950782 + 2 NA Intergenic Intergenic -21776 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 240-309 chr4 5602394 5602626 + 2 NA intron (NM_147127, intron 16 of 21) HAL1|LINE|L1 77354 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 338-131 chr12 77379336 77379625 + 2 NA Intergenic Intergenic -313911 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 290-350 chr5 87164091 87164256 + 2 NA intron (NR_105018, intron 2 of 3) intron (NR_105018, intron 2 of 3) 44025 NR_105018 101929380 NR_105018 LOC101929380 - uncharacterized LOC101929380 ncRNA 363-292 chr3 105346091 105346443 + 2 NA Intergenic Intergenic -20446 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 497-288 chr8 112796326 112796697 + 2 NA intron (NM_001363185, intron 11 of 66) MIR|SINE|MIR 153018 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 262-72 chr11 24468852 24469102 + 2 NA Intergenic L1MA9|LINE|L1 -28076 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 245-255 chr4 67047555 67047777 + 2 NA Intergenic Intergenic 374334 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 308-377 chr5 39565862 39566045 + 2 NA Intergenic X7A_LINE|LINE|CR1 45522 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 618-16 chr10 118761796 118762235 + 2 NA Intergenic Intergenic -7045 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 201-27 chr10 29649173 29649317 + 2 NA intron (NM_001323599, intron 3 of 38) intron (NM_001323599, intron 3 of 38) -14274 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 334-201 chr17 7875986 7876242 + 2 NA intron (NM_001330111, intron 2 of 4) L1MB7|LINE|L1 -8682 NM_001005271 1107 Hs.25601 NM_005852 ENSG00000170004 CHD3 Mi-2a|Mi2-ALPHA|SNIBCPS|ZFH chromodomain helicase DNA binding protein 3 protein-coding 344-282 chr20 49665778 49666072 + 2 NA intron (NM_004776, intron 1 of 8) intron (NM_004776, intron 1 of 8) 47953 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 295-328 chr4 39399003 39399275 + 2 NA Intergenic L1MC|LINE|L1 -7791 NM_175737 152831 Hs.90756 NM_175737 ENSG00000134962 KLB BKL klotho beta protein-coding 146-95 chrX 95645335 95645436 + 2 NA Intergenic Intergenic -582159 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 247-379 chr7 34417037 34417221 + 2 NA intron (NR_033665, intron 3 of 3) L1MC5|LINE|L1 -241089 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 339-556 chr8 25696322 25696581 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie 237218 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 410-290 chr7 123545952 123546284 + 2 NA intron (NM_001282422, intron 2 of 3) L1ME3A|LINE|L1 -11454 NR_104245 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 237-210 chr20 39405712 39405885 + 2 NA Intergenic Intergenic -181050 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 302-429 chr8 10383648 10383890 + 2 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -90796 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 476-154 chr2 205634005 205634430 + 2 NA Intergenic Intergenic -48283 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 312-133 chr14 29362456 29362704 + 2 NA Intergenic Intergenic 564516 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 384-205 chr20 45717118 45717399 + 2 NA Intergenic L1PA11|LINE|L1 -5089 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 461-210 chr5 28327166 28327593 + 2 NA Intergenic Intergenic -39714 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 163-35 chr12 65356790 65356914 + 2 NA intron (NM_001031679, intron 4 of 6) intron (NM_001031679, intron 4 of 6) 77865 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 413-69 chr12 78213305 78213511 + 2 NA TTS (NM_014903) TTS (NM_014903) 146338 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 302-295 chr3 109820693 109820957 + 2 NA Intergenic Intergenic 217997 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 611-41 chr14 80410703 80411249 + 2 NA intron (NR_038355, intron 8 of 8) intron (NR_038355, intron 8 of 8) -179919 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 313-386 chr4 72942113 72942299 + 2 NA Intergenic Intergenic 127510 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 163-81 chr3 81368863 81369016 + 2 NA Intergenic L1MB5|LINE|L1 375071 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 524-29 chr10 44266822 44267217 + 2 NA Intergenic AluJr|SINE|Alu -25731 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 646-93 chr3 179085780 179086226 + 2 NA Intergenic Intergenic -14194 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 303-343 chr5 6246851 6247109 + 2 NA Intergenic LTR109A2|LTR|ERV1 90312 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 401-164 chr2 108948320 108948675 + 2 NA intron (NM_022336, intron 1 of 11) THE1D|LTR|ERVL-MaLR 40723 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 428-258 chr6 87207879 87208274 + 2 NA intron (NM_015021, intron 1 of 7) HAL1|LINE|L1 52511 NM_015021 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 471-46 chr11 50219539 50219856 + 2 NA Intergenic L1MC3|LINE|L1 78765 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 702-104 chr8 112790600 112791237 + 2 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 147425 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 281-257 chr20 41813705 41813891 + 2 NA Intergenic L1ME3|LINE|L1 -195421 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 153-31 chr14 60009017 60009114 + 2 NA intron (NR_075071, intron 23 of 32) L4_B_Mam|LINE|RTE-X -82846 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 292-423 chr8 43821047 43821281 + 2 NA Intergenic ALR/Alpha|Satellite|centr 528722 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 616-45 chr14 66785870 66786455 + 2 NA intron (NM_001024218, intron 3 of 21) L1MDa|LINE|L1 278755 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 355-24 chr1 215298730 215298911 + 2 NA Intergenic L1ME1|LINE|L1 216083 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 171-123 chr7 44750386 44750550 + 2 NA intron (NM_031449, intron 1 of 18) intron (NM_031449, intron 1 of 18) 1621 NM_031449 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 440-102 chr18 67406786 67407168 + 2 NA Intergenic Intergenic -109569 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 485-151 chr2 167163478 167163794 + 2 NA intron (NM_152381, intron 3 of 10) L1ME2|LINE|L1 -22681 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 246-69 chr11 58248824 58248999 + 2 NA Intergenic L1M1|LINE|L1 19349 NM_207374 81341 Hs.531507 NM_207374 ENSG00000172772 OR10W1 OR10W1P|OR10W1Q|OR11-236|UNQ6469 olfactory receptor family 10 subfamily W member 1 protein-coding 307-174 chr16 50391944 50392177 + 2 NA intron (NR_146572, intron 1 of 1) intron (NR_146572, intron 1 of 1) 3073 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 309-169 chr15 35922547 35922733 + 2 NA Intergenic Intergenic -4216 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 256-105 chr13 66308762 66308968 + 2 NA intron (NM_001318373, intron 3 of 3) MER74C|LTR|ERVL 90615 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 330-367 chr3 189295966 189296141 + 2 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -55459 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 345-439 chr5 133461684 133461856 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -34064 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 709-6 chr10 42998538 42999119 + 2 NA Intergenic Intergenic 1265 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 422-91 chr15 27103074 27103355 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 58105 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 325-483 chr6 163565131 163565422 + 2 NA 3' UTR (NM_206855, exon 6 of 6) 3' UTR (NM_206855, exon 6 of 6) 106208 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 608-152 chr7 147927107 147927562 + 2 NA intron (NM_014141, intron 13 of 22) intron (NM_014141, intron 13 of 22) 255655 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 355-528 chr9 5316831 5317112 + 2 NA Intergenic L1M2a|LINE|L1 -12255 NM_134441 6019 Hs.127032 NM_005059 ENSG00000107014 RLN2 H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2 relaxin 2 protein-coding 574-198 chrX 13587273 13587645 + 2 NA intron (NM_015507, intron 1 of 11) L1MA4A|LINE|L1 -2833 NR_106734 102466519 NR_106734 ENSG00000283493 MIR6086 hsa-mir-6086 microRNA 6086 ncRNA 236-46 chr10 65345168 65345307 + 2 NA Intergenic Intergenic -226188 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 789-40 chr5 123160030 123160586 + 2 NA intron (NM_001136239, intron 5 of 7) intron (NM_001136239, intron 5 of 7) -69992 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 204-212 chr4 34265709 34265883 + 2 NA intron (NR_147184, intron 1 of 3) L1MA5|LINE|L1 3951 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 248-33 chr10 44133316 44133507 + 2 NA Intergenic Intergenic -159339 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 294-485 chr8 139746542 139746766 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -43531 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 401-276 chr6 17207409 17207650 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -73832 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 250-98 chr12 110805534 110805685 + 2 NA Intergenic MER113|DNA|hAT-Charlie -41378 NM_001286243 160762 Hs.437141 NM_152591 ENSG00000173093 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 308-458 chr7 32090100 32090309 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -18768 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 211-7 chr1 62824026 62824233 + 2 NA intron (NM_178221, intron 6 of 10) intron (NM_178221, intron 6 of 10) 39997 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 579-130 chr5 53624717 53625281 + 2 NA intron (NR_134474, intron 3 of 5) AluJo|SINE|Alu 64360 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 312-125 chr13 48618366 48618624 + 2 NA Intergenic ERVL47-int|LTR|ERVL -35434 NM_020377 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 260-89 chr11 111247272 111247477 + 2 NA intron (NM_198498, intron 1 of 4) intron (NM_198498, intron 1 of 4) 1649 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 144-102 chr8 103782158 103782263 + 2 NA intron (NM_001348497, intron 3 of 22) L1ME4b|LINE|L1 -37010 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 428-240 chr5 125445540 125445790 + 2 NA Intergenic L1PB1|LINE|L1 -47596 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 301-245 chr2 230133806 230134027 + 2 NA Intergenic Intergenic -64992 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 187-114 chr3 122041772 122041897 + 2 NA Intergenic L1M4c|LINE|L1 -13528 NM_175862 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 379-153 chr2 29652283 29652559 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -177044 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 258-296 chr4 90193764 90193946 + 2 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -41176 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 398-299 chr6 98330570 98330821 + 2 NA Intergenic L1M5|LINE|L1 306164 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 261-371 chr8 53389577 53389763 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 134295 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 473-36 chr10 88225551 88225914 + 2 NA Intergenic AluJo|SINE|Alu 357586 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 466-57 chr12 15438193 15438494 + 2 NA intron (NM_030667, intron 1 of 26) L1PA16|LINE|L1 -108268 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 443-192 chr22 26255022 26255389 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 85731 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 540-148 chr3 106273215 106273696 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -404054 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 339-612 chr9 89214424 89214711 + 2 NA Intergenic Intergenic -35749 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 263-430 chr8 131413702 131413917 + 2 NA Intergenic Intergenic -372900 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 394-274 chr5 98564529 98564860 + 2 NA Intergenic Intergenic -203938 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 484-32 chr10 62052734 62053086 + 2 NA intron (NM_001244638, intron 2 of 6) intron (NM_001244638, intron 2 of 6) 3553 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 546-56 chr12 86423430 86423820 + 2 NA intron (NM_001351286, intron 3 of 7) (TAATT)n|Simple_repeat|Simple_repeat -166326 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 558-222 chr8 128996356 128996732 + 2 NA Intergenic Intergenic -30543 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 375-424 chr8 131644462 131644765 + 2 NA Intergenic L1PA15|LINE|L1 -259480 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 222-204 chr20 8548544 8548713 + 2 NA intron (NM_182734, intron 3 of 32) HAL1b|LINE|L1 -282557 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 193-191 chr7 83108509 83108668 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 54296 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 425-77 chr13 108666339 108666723 + 2 NA intron (NM_015011, intron 2 of 34) FLAM_C|SINE|Alu 36920 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 277-334 chr5 119375181 119375412 + 2 NA intron (NM_014350, intron 1 of 1) intron (NM_014350, intron 1 of 1) 19277 NM_014350 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 382-23 chr1 221897716 221898053 + 2 NA Intergenic Intergenic -57218 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 132-63 chr5 93464390 93464460 + 2 NA intron (NR_021491, intron 4 of 5) intron (NR_021491, intron 4 of 5) 106918 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 638-152 chr8 43645611 43646085 + 2 NA Intergenic ALR/Alpha|Satellite|centr 353406 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 323-54 chr10 44732371 44732613 + 2 NA Intergenic Intergenic -178824 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 322-353 chr3 160229899 160230124 + 2 NA intron (NR_148401, intron 18 of 18) MER2|DNA|TcMar-Tigger 4375 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 226-341 chr8 74759993 74760166 + 2 NA Intergenic Intergenic 54386 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 532-5 chr1 96547964 96548339 + 2 NA Intergenic Intergenic -173454 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 303-420 chr7 37090121 37090325 + 2 NA intron (NM_001206480, intron 15 of 21) MLT1L|LTR|ERVL-MaLR 92427 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 227-216 chr21 33961000 33961165 + 2 NA intron (NR_134558, intron 2 of 2) MIRb|SINE|MIR -15300 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 270-283 chr4 176210549 176210716 + 2 NA Intergenic L2c|LINE|L2 -15047 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 370-48 chr10 59400197 59400526 + 2 NA Intergenic L1PA7|LINE|L1 -37180 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 441-192 chr5 14072673 14073109 + 2 NA Intergenic AluSx1|SINE|Alu -70451 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 408-297 chr6 98608859 98609197 + 2 NA Intergenic L1MD1|LINE|L1 222672 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 167-90 chr5 44187047 44187188 + 2 NA Intergenic Intergenic -201615 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 504-190 chr4 72604124 72604456 + 2 NA Intergenic Intergenic -35069 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 474-309 chr9 103166730 103167066 + 2 NA intron (NR_121578, intron 8 of 9) L1M1|LINE|L1 158135 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 114-26 chr2 35190032 35190098 + 2 NA Intergenic MIRb|SINE|MIR -281340 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 480-145 chr2 67513269 67513595 + 2 NA Intergenic Intergenic 116099 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 231-197 chr21 23963272 23963437 + 2 NA Intergenic Intergenic 358023 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 327-193 chr17 5756023 5756245 + 2 NA Intergenic L1MC4a|LINE|L1 -16100 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 334-5 chr1 40587013 40587325 + 2 NA Intergenic MER21C|LTR|ERVL 55532 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 311-339 chr3 50086479 50086712 + 2 NA Intergenic Intergenic -2324 NR_036627 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 457-169 chr3 181361847 181362240 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 80443 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 325-475 chr6 48412022 48412301 + 2 NA Intergenic Intergenic -343472 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 275-36 chr10 29905778 29906026 + 2 NA Intergenic Intergenic 153684 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 226-303 chr6 78849178 78849363 + 2 NA Intergenic Intergenic -18281 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 390-145 chr17 68307940 68308221 + 2 NA intron (NM_001352899, intron 2 of 12) AluJo|SINE|Alu 15945 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 152-83 chr6 65296346 65296443 + 2 NA intron (NM_001292009, intron 11 of 43) MIRb|SINE|MIR -5024 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 230-11 chr1 81365388 81365513 + 2 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 59055 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 314-502 chr6 49173828 49174004 + 2 NA Intergenic Intergenic 289337 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 297-274 chr21 24568256 24568499 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 139637 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 375-427 chr8 136586252 136586610 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 55633 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 166-94 chr5 43312027 43312137 + 2 NA intron (NM_001324220, intron 1 of 10) intron (NM_001324220, intron 1 of 10) 1099 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 322-432 chr5 76254847 76255080 + 2 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) -148322 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 279-165 chr2 23292466 23292657 + 2 NA Intergenic Intergenic -92618 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 488-84 chr14 72186607 72187068 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 253310 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 205-221 chr5 52900126 52900272 + 2 NA intron (NM_181501, intron 11 of 28) L3|LINE|CR1 -89153 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 383-399 chr8 131319188 131319419 + 2 NA Intergenic L2a|LINE|L2 -278394 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 223-233 chr3 190849469 190849651 + 2 NA Intergenic Intergenic 13134 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 308-331 chr4 52109987 52110153 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 58766 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 437-201 chr4 160629033 160629464 + 2 NA Intergenic AluSx|SINE|Alu -851464 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 404-236 chr4 102217942 102218313 + 2 NA Intergenic Intergenic 106185 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 222-113 chr14 77951898 77952059 + 2 NA Intergenic Intergenic 151869 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 311-368 chr4 29405951 29406148 + 2 NA Intergenic Intergenic 191757 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 342-398 chr5 52862858 52863096 + 2 NA intron (NM_181501, intron 3 of 28) L1MEb|LINE|L1 75061 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 302-16 chr1 163682523 163682703 + 2 NA Intergenic L1MC4|LINE|L1 -259422 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 365-352 chr6 69968811 69969024 + 2 NA intron (NM_001858, intron 11 of 50) intron (NM_001858, intron 11 of 50) 102361 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 653-114 chr7 54886225 54886676 + 2 NA Intergenic Intergenic 127137 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 154-104 chr8 73869030 73869130 + 2 NA intron (NR_073119, intron 1 of 5) L1MB7|LINE|L1 9782 NR_073120 55284 Hs.128841 NM_018299 ENSG00000104343 UBE2W UBC-16|UBC16 ubiquitin conjugating enzyme E2 W protein-coding 292-421 chr8 30050402 30050597 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 32565 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 484-13 chr1 112121158 112121469 + 2 NA Intergenic L1PA14|LINE|L1 130777 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 389-64 chr11 95683064 95683292 + 2 NA Intergenic AluJr4|SINE|Alu 106604 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 241-338 chr6 120800593 120800784 + 2 NA Intergenic Intergenic 533792 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 441-132 chr2 129752551 129752864 + 2 NA Intergenic Intergenic 124784 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 284-80 chr12 2698129 2698343 + 2 NA TTS (NM_001129827) TTS (NM_001129827) -7079 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 590-138 chr5 119679677 119680144 + 2 NA Intergenic Intergenic 50351 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 221-47 chr10 130442128 130442288 + 2 NA Intergenic Intergenic 305799 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 274-77 chr11 80369558 80369732 + 2 NA Intergenic L1MC4a|LINE|L1 393158 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 524-178 chr4 74021926 74022328 + 2 NA Intergenic Intergenic 16562 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 218-58 chr11 95961278 95961460 + 2 NA Intergenic Intergenic -37162 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 537-226 chr7 8581798 8582279 + 2 NA intron (NM_152745, intron 2 of 2) MER52A|LTR|ERV1 148429 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 496-203 chr5 10031824 10032153 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -128164 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 318-591 chrX 75733101 75733285 + 2 NA Intergenic L1PREC2|LINE|L1 9886 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 473-191 chr4 46350441 46350843 + 2 NA intron (NM_001114175, intron 2 of 8) A-rich|Low_complexity|Low_complexity 38737 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 192-159 chr5 31875791 31875939 + 2 NA intron (NM_178140, intron 2 of 24) L1M5|LINE|L1 60294 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 505-200 chr3 143107191 143107663 + 2 NA Intergenic LTR25-int|LTR|ERV1 -12344 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 306-374 chr4 176267639 176267805 + 2 NA intron (NM_080874, intron 1 of 6) intron (NM_080874, intron 1 of 6) 1500 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 353-64 chr10 78492905 78493088 + 2 NA Intergenic L1MD1|LINE|L1 225654 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 560-20 chr10 69604366 69604755 + 2 NA Intergenic L1MD1|LINE|L1 -25687 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 254-97 chr13 69213662 69213887 + 2 NA Intergenic L1PA16|LINE|L1 -8572 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 271-324 chr4 157008410 157008638 + 2 NA Intergenic Intergenic -36725 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 217-152 chr17 58889580 58889765 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 133803 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 360-90 chr12 55615042 55615355 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -21694 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 456-51 chr11 110220226 110220548 + 2 NA intron (NM_001260493, intron 14 of 15) MIRb|SINE|MIR 76325 NM_001260494 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 489-39 chr11 11764439 11764798 + 2 NA Intergenic Intergenic 18604 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 687-117 chr8 61401922 61402329 + 2 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 114155 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 303-280 chr3 45856101 45856268 + 2 NA intron (NM_001276379, intron 2 of 9) L1PA10|LINE|L1 -14065 NR_075080 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 340-7 chr1 44816984 44817298 + 2 NA Intergenic Intergenic 8659 NM_001136537 149478 Hs.632400 NM_001136537 ENSG00000222009 BTBD19 - BTB domain containing 19 protein-coding 218-45 chr11 26932495 26932672 + 2 NA Intergenic Intergenic -61529 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 420-290 chr8 101769206 101769612 + 2 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 21560 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 604-112 chr3 119783346 119783819 + 2 NA intron (NM_022002, intron 1 of 8) intron (NM_022002, intron 1 of 8) 872 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 590-4 chr1 58511386 58511818 + 2 NA intron (NM_145243, intron 7 of 8) AluJb|SINE|Alu 35124 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 472-187 chr20 54311244 54311546 + 2 NA Intergenic Intergenic 103308 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 456-125 chr16 79954128 79954516 + 2 NA Intergenic Intergenic 159073 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 223-97 chr15 37682980 37683177 + 2 NA Intergenic Intergenic -251529 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 521-80 chr14 45933493 45933863 + 2 NA Intergenic L1P4|LINE|L1 -130481 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 311-102 chr12 59096081 59096374 + 2 NA Intergenic X6B_LINE|LINE|CR1 -175689 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 286-59 chr10 132826795 132826980 + 2 NA intron (NM_001200049, intron 50 of 57) intron (NM_001200049, intron 50 of 57) -40740 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B|SPAX8 NK6 homeobox 2 protein-coding 152-76 chr4 176248842 176248952 + 2 NA intron (NM_080874, intron 1 of 6) L1ME3B|LINE|L1 20325 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 135-53 chr4 130594407 130594488 + 2 NA Intergenic Intergenic 218086 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 398-108 chr14 69895498 69895782 + 2 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) 16224 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 298-34 chr10 10987010 10987244 + 2 NA intron (NM_001326319, intron 4 of 16) intron (NM_001326319, intron 4 of 16) -17521 NM_001326330 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 317-481 chr8 81359844 81360113 + 2 NA Intergenic AluY|SINE|Alu 79442 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 312-44 chr10 56838095 56838402 + 2 NA Intergenic Intergenic 466311 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 368-61 chr10 82036403 82036606 + 2 NA intron (NR_163253, intron 2 of 10) MIRb|SINE|MIR 158817 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 233-148 chr19 45549663 45549848 + 2 NA 3' UTR (NM_025136, exon 2 of 2) 3' UTR (NM_025136, exon 2 of 2) 35047 NM_025136 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 outer mitochondrial membrane lipid metabolism regulator OPA3 protein-coding 474-63 chr12 41967462 41967906 + 2 NA Intergenic Intergenic 177190 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 398-34 chr10 33998899 33999138 + 2 NA Intergenic MER50|LTR|ERV1 -226338 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 522-196 chr4 127747924 127748283 + 2 NA intron (NM_001318467, intron 2 of 6) MER77|LTR|ERVL 17703 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 256-428 chr8 114057706 114057885 + 2 NA Intergenic Intergenic -620856 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 358-407 chr6 70338807 70339103 + 2 NA Intergenic L1PA15|LINE|L1 -35871 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 409-38 chr11 41293081 41293360 + 2 NA intron (NM_001258419, intron 1 of 6) L1ME4a|LINE|L1 166416 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 288-460 chr8 136823495 136823663 + 2 NA intron (NR_147196, intron 4 of 5) MSTC|LTR|ERVL-MaLR 292781 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 457-176 chr4 60306541 60306811 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -615943 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 641-65 chr2 124616751 124617188 + 2 NA intron (NM_130773, intron 12 of 23) Tigger1|DNA|TcMar-Tigger 591682 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 297-326 chr4 60127021 60127253 + 2 NA Intergenic Intergenic -795482 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 230-192 chr2 204309113 204309243 + 2 NA Intergenic MIR|SINE|MIR -236297 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 146 chr1 33989066 33989147 + 2 NA intron (NM_052896, intron 3 of 69) L1ME1|LINE|L1 120150 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 335-407 chr5 4151877 4152103 + 2 NA Intergenic Intergenic 556158 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 256-274 chr3 141222869 141223052 + 2 NA Intergenic L1ME1|LINE|L1 -8865 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 340-66 chr10 131012457 131012777 + 2 NA Intergenic LTR53|LTR|ERVL -49949 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 222-386 chr9 22721433 22721590 + 2 NA intron (NR_038977, intron 3 of 5) (TAATT)n|Simple_repeat|Simple_repeat 75311 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 144-58 chr3 69916044 69916127 + 2 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) -20507 NM_001184968 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 289-101 chr12 41021932 41022120 + 2 NA intron (NM_001843, intron 20 of 23) intron (NM_001843, intron 20 of 23) 113669 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 468-5 chr1 74114648 74115017 + 2 NA intron (NM_001105659, intron 4 of 7) L1M4b|LINE|L1 83344 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 267-61 chr10 131165536 131165714 + 2 NA intron (NM_174937, intron 5 of 11) intron (NM_174937, intron 5 of 11) 70407 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 371-68 chr11 56125706 56126039 + 2 NA Intergenic MIR|SINE|MIR 3499 NM_001005201 390152 Hs.553745 NM_001005201 ENSG00000181761 OR8H3 OR11-172 olfactory receptor family 8 subfamily H member 3 protein-coding 302-142 chr15 47756107 47756283 + 2 NA intron (NM_153618, intron 1 of 18) intron (NM_153618, intron 1 of 18) 37706 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 249-365 chr6 156516909 156517087 + 2 NA Intergenic Intergenic 138248 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 249-36 chr10 18510884 18511090 + 2 NA intron (NM_201597, intron 6 of 13) intron (NM_201597, intron 6 of 13) 110412 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 390-381 chr8 89038188 89038425 + 2 NA Intergenic Intergenic -710823 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 280-440 chr9 87861330 87861547 + 2 NA Intergenic L1M2|LINE|L1 -2382 NR_040117 392364 Hs.689633 NR_040117 LOC392364 - nuclear pore associated protein 1 pseudogene pseudo 366-370 chr6 36922390 36922595 + 2 NA intron (NM_152734, intron 7 of 7) intron (NM_152734, intron 7 of 7) -25771 NM_001199159 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CD364|CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 185-120 chr20 23323528 23323695 + 2 NA Intergenic LTR56|LTR|ERV1 -27180 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 394-205 chr21 31455696 31456049 + 2 NA intron (NM_001353690, intron 1 of 27) L1MC4|LINE|L1 103215 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 469-161 chr20 59780592 59780983 + 2 NA intron (NM_080672, intron 7 of 12) MIR|SINE|MIR 59577 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 465-251 chr6 49694914 49695202 + 2 NA intron (NM_001261822, intron 8 of 8) intron (NM_001261822, intron 8 of 8) 18485 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 236-21 chr1 172349318 172349482 + 2 NA intron (NM_015569, intron 17 of 20) MIRb|SINE|MIR -71285 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 365-212 chr2 166708997 166709232 + 2 NA Intergenic Intergenic -179373 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 336-134 chr12 60206187 60206468 + 2 NA Intergenic Intergenic 516957 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 690-70 chr3 36576308 36576855 + 2 NA Intergenic Intergenic 163280 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 451-245 chr8 132119013 132119290 + 2 NA Intergenic Intergenic -13886 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 369-294 chr4 71632349 71632705 + 2 NA Intergenic Intergenic 151552 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 209-14 chr1 157073104 157073258 + 2 NA Intergenic L1MC5|LINE|L1 26627 NM_001004341 440695 Hs.127138 NM_001004341 ENSG00000253831 ETV3L - ETS variant 3 like protein-coding 167-19 chr10 29720578 29720678 + 2 NA intron (NM_001323599, intron 1 of 38) L1MEc|LINE|L1 15173 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 755-50 chr4 183044453 183045010 + 2 NA Intergenic L1MA8|LINE|L1 7066 NR_003612 403315 Hs.652187 NR_003612 ENSG00000230219 FAM92A1P2 FAM92A3 family with sequence similarity 92, member A3 pseudo 224-17 chr1 189141596 189141769 + 2 NA Intergenic L1MA6|LINE|L1 1334328 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 326-237 chr2 38433152 38433429 + 2 NA intron (NR_146454, intron 1 of 1) intron (NR_146454, intron 1 of 1) 1996 NR_146454 100996902 Hs.128280 NR_146454 ENSG00000235009 LINC01883 - long intergenic non-protein coding RNA 1883 ncRNA 150-25 chr12 15287026 15287118 + 2 NA Intergenic L1MEc|LINE|L1 -35436 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 351-272 chr21 23583702 23583979 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -199005 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 185-76 chr17 66135619 66135757 + 2 NA intron (NM_001353129, intron 4 of 26) intron (NM_001353129, intron 4 of 26) 56204 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 546-48 chr12 14248440 14248784 + 2 NA Intergenic AluSx4|SINE|Alu -117020 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 171-91 chr4 61947171 61947336 + 2 NA intron (NM_001371343, intron 15 of 23) intron (NM_001371343, intron 15 of 23) 214512 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 444-195 chr5 45969268 45969624 + 2 NA Intergenic ALR/Alpha|Satellite|centr -273066 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 207-114 chr18 69944574 69944740 + 2 NA intron (NM_001303619, intron 1 of 4) intron (NM_001303619, intron 1 of 4) 3216 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 274-176 chr18 58838815 58838967 + 2 NA Intergenic Intergenic -24033 NM_001318726 55205 Hs.529023 NM_018181 ENSG00000074657 ZNF532 - zinc finger protein 532 protein-coding 230-101 chr13 69200704 69200917 + 2 NA Intergenic Intergenic -21536 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 521-2 chr1 29725277 29725629 + 2 NA Intergenic MIR|SINE|MIR 312159 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 230-143 chr16 82576297 82576450 + 2 NA Intergenic Intergenic -50596 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 160-30 chr14 80061396 80061534 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -149954 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 366-349 chr5 117562463 117562724 + 2 NA intron (NR_046089, intron 5 of 5) L1ME3A|LINE|L1 147081 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 316-124 chr12 24615227 24615431 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -31161 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 198 chr1 5131300 5131488 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 476785 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 275-267 chr4 67758055 67758318 + 2 NA Intergenic Intergenic -2100 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 340-514 chr7 108789395 108789584 + 2 NA Intergenic L1MCc|LINE|L1 95098 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 471-166 chr3 71053776 71054181 + 2 NA intron (NR_146142, intron 7 of 19) intron (NR_146142, intron 7 of 19) 10946 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 188-108 chr2 161619361 161619495 + 2 NA Intergenic Intergenic -4907 NM_001178016 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 231-122 chr16 81412949 81413157 + 2 NA Intergenic AluSz|SINE|Alu 28035 NR_039871 100616150 NR_039871 ENSG00000284473 MIR4720 - microRNA 4720 ncRNA 595 chr1 11552266 11552714 + 2 NA Intergenic MLT2B4|LTR|ERVL -57041 NR_104624 101929181 Hs.568616 NR_104624 ENSG00000235643 LINC01647 - long intergenic non-protein coding RNA 1647 ncRNA 335-356 chr3 96654751 96654967 + 2 NA Intergenic Intergenic -159735 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 427-205 chr5 35192409 35192810 + 2 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 37878 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 236-295 chr5 126683259 126683433 + 2 NA Intergenic Intergenic 51641 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 293-304 chr4 82121653 82121899 + 2 NA Intergenic L1M5|LINE|L1 252215 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 320-65 chr10 86550696 86550890 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -29001 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 465-261 chr6 155601316 155601721 + 2 NA Intergenic Intergenic 86674 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 567-181 chr8 70937309 70937775 + 2 NA Intergenic Intergenic 268203 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 215-67 chr12 84608425 84608558 + 2 NA Intergenic Intergenic 304308 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 244-108 chr15 64611060 64611267 + 2 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 92118 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 359-98 chr11 106166294 106166498 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -34280 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 642-18 chr11 39879967 39880365 + 2 NA Intergenic LTR37-int|LTR|ERV1 412964 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 310-389 chr5 5861496 5861685 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 438913 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 346-471 chr7 108958894 108959092 + 2 NA Intergenic L1ME3A|LINE|L1 -74406 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 356-18 chr1 101928355 101928637 + 2 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 56484 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 358-436 chr7 49554004 49554321 + 2 NA Intergenic Intergenic -219476 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 431-4 chr1 33597290 33597636 + 2 NA intron (NM_052896, intron 45 of 69) intron (NM_052896, intron 45 of 69) 124818 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 337-76 chr11 10171371 10171615 + 2 NA intron (NM_030962, intron 2 of 39) L1MA3|LINE|L1 122714 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 345-413 chr5 38193704 38193943 + 2 NA Intergenic Intergenic 45343 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 654-41 chr15 70175701 70176216 + 2 NA Intergenic L1ME4a|LINE|L1 -78041 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 276-460 chr8 110025163 110025334 + 2 NA Intergenic Intergenic -49477 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 257-121 chr15 24640002 24640197 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -35295 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 354-351 chr4 177131869 177132075 + 2 NA Intergenic Intergenic -177902 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 699-86 chr5 106174651 106175218 + 2 NA Intergenic L1MB4|LINE|L1 836080 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 388-363 chr9 27226707 27227054 + 2 NA intron (NM_001290077, intron 20 of 21) intron (NM_001290077, intron 20 of 21) 55913 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 443-41 chr10 78171216 78171613 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -77211 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 250-106 chr13 66268059 66268233 + 2 NA Intergenic Intergenic 49896 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 165-14 chr11 35103023 35103146 + 2 NA Intergenic Intergenic 34948 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 398-7 chr1 67281088 67281407 + 2 NA Intergenic Intergenic -26117 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 368-142 chr14 60404663 60404910 + 2 NA Intergenic L1PA10|LINE|L1 81277 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 212-40 chr10 57421258 57421411 + 2 NA Intergenic Intergenic -116775 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 362-239 chr2 204863590 204863848 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 318244 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 238-348 chr7 9933915 9934131 + 2 NA Intergenic L1MEf|LINE|L1 299753 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 207-264 chr6 170156400 170156585 + 2 NA Intergenic Intergenic -4150 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 261-33 chr10 43907043 43907244 + 2 NA Intergenic Intergenic -2153 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 222-349 chr7 89357967 89358106 + 2 NA Intergenic Intergenic -562299 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 234-270 chr4 53318202 53318399 + 2 NA intron (NM_152540, intron 2 of 8) intron (NM_152540, intron 2 of 8) 47761 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 257-210 chr2 136940424 136940574 + 2 NA intron (NM_001316349, intron 2 of 27) AluJb|SINE|Alu 174954 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 577-12 chr1 112169449 112169874 + 2 NA Intergenic Intergenic 179125 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 263-60 chr10 116128890 116129138 + 2 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 65775 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 237-384 chr8 107703328 107703551 + 2 NA Intergenic Intergenic -205521 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 494-183 chr3 104478048 104478344 + 2 NA Intergenic L1PREC2|LINE|L1 -888517 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 243-411 chr7 26112385 26112536 + 2 NA Intergenic Intergenic -39738 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 254-32 chr10 8674822 8675032 + 2 NA Intergenic Intergenic -80536 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 375-45 chr10 44362500 44362804 + 2 NA Intergenic Intergenic 22445 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 475-153 chr2 185040562 185040932 + 2 NA Intergenic Intergenic 126325 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 218-35 chr10 109977078 109977259 + 2 NA intron (NR_038943, intron 2 of 4) MER5A|DNA|hAT-Charlie -19205 NM_001320591 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 256-371 chr6 157929452 157929644 + 2 NA intron (NM_016224, intron 12 of 17) intron (NM_016224, intron 12 of 17) -52315 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 274-18 chr1 181713478 181713694 + 2 NA intron (NM_001205293, intron 8 of 47) intron (NM_001205293, intron 8 of 47) 230069 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 201-226 chr7 25865646 25865784 + 2 NA Intergenic Intergenic -75596 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 177-38 chr12 72598516 72598662 + 2 NA intron (NM_013381, intron 12 of 18) MLT1J-int|LTR|ERVL-MaLR -325080 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 414-289 chr6 125234199 125234445 + 2 NA intron (NM_003287, intron 3 of 6) intron (NM_003287, intron 3 of 6) 30611 NM_001318907 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 259-244 chr3 26353156 26353400 + 2 NA Intergenic Intergenic -269528 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 460-143 chr2 84351400 84351667 + 2 NA Intergenic Intergenic 60851 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 299-335 chr4 107110690 107110914 + 2 NA Intergenic L1MA6|LINE|L1 -74489 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 285-260 chr3 26335406 26335571 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -287318 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 343-347 chr3 103773752 103774082 + 2 NA Intergenic Intergenic -249801 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 345-479 chr6 161950344 161950627 + 2 NA intron (NM_004562, intron 6 of 11) AluSx1|SINE|Alu 479508 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 552-75 chr15 86593402 86593861 + 2 NA intron (NM_152336, intron 22 of 24) L1ME1|LINE|L1 -276663 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 235-156 chr2 8242304 8242536 + 2 NA intron (NR_152741, intron 9 of 9) intron (NR_152741, intron 9 of 9) 85999 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 355-492 chr8 50482370 50482592 + 2 NA intron (NR_135797, intron 8 of 20) intron (NR_135797, intron 8 of 20) 318350 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 354-505 chrX 41855939 41856230 + 2 NA intron (NM_003688, intron 1 of 26) intron (NM_003688, intron 1 of 26) 66950 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 377-289 chr4 60390914 60391240 + 2 NA Intergenic Intergenic -531542 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 395-211 chr22 27107628 27107946 + 2 NA Intergenic Intergenic -47269 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 328-193 chr16 35487525 35487763 + 2 NA Intergenic L1MA9|LINE|L1 -7048 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 263-14 chr1 104180626 104180873 + 2 NA Intergenic Intergenic 107726 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 239-186 chr2 134616920 134617066 + 2 NA intron (NM_030923, intron 2 of 7) L1MB7|LINE|L1 102007 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 283-294 chr3 67692528 67692700 + 2 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 37917 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 335-25 chr1 172994946 172995144 + 2 NA Intergenic Intergenic 55918 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 313-89 chr11 94730848 94731134 + 2 NA intron (NR_135096, intron 1 of 6) intron (NR_135096, intron 1 of 6) 9364 NR_135094 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 337-388 chr4 37135299 37135530 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 106577 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 189-228 chr9 97784646 97784787 + 2 NA intron (NR_147055, intron 5 of 10) L1MC5a|LINE|L1 68364 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 1070-13 chr3 189541123 189541733 + 2 NA Intergenic Intergenic -55318 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 425-22 chr1 230030361 230030662 + 2 NA Intergenic LTR54B|LTR|ERV1 -27278 NM_001291866 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 587-68 chr19 51867875 51868300 + 2 NA 3' UTR (NM_001370449, exon 6 of 6) 3' UTR (NM_001370449, exon 6 of 6) 19849 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 350-484 chr7 84918223 84918438 + 2 NA Intergenic Intergenic 203601 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 308-468 chr7 72485243 72485487 + 2 NA Intergenic AluJo|SINE|Alu -38222 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 265-50 chr10 125570485 125570690 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -3784 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 401-118 chr16 30146957 30147200 + 2 NA Intergenic Intergenic -23769 NM_001109891 5595 Hs.861 NM_002746 ENSG00000102882 MAPK3 ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK mitogen-activated protein kinase 3 protein-coding 446-308 chr8 101153355 101153682 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 52155 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 404-309 chr8 51022042 51022398 + 2 NA Intergenic L1M3f|LINE|L1 787225 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 467-150 chr20 16839499 16839934 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 91363 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 499-9 chr1 93440652 93441011 + 2 NA Intergenic L1ME4b|LINE|L1 -7287 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 227-190 chr2 176863215 176863436 + 2 NA Intergenic L1MD|LINE|L1 225571 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 264-387 chr7 62660664 62660894 + 2 NA Intergenic ALR/Alpha|Satellite|centr 643277 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 236-122 chr14 87379680 87379827 + 2 NA Intergenic Intergenic 275541 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 323-341 chr3 118345800 118346088 + 2 NA Intergenic L1M2|LINE|L1 -295824 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 200-128 chr2 56832459 56832614 + 2 NA Intergenic Intergenic -646766 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 253-185 chr2 59706412 59706631 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 488813 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 356-290 chr20 46519742 46520065 + 2 NA Intergenic MER66C|LTR|ERV1 -6331 NM_001270497 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 438-299 chr9 119779271 119779609 + 2 NA Intergenic L1MEg|LINE|L1 -155620 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 656-143 chr9 119127996 119128455 + 2 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat 241210 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 453-305 chr9 91051069 91051395 + 2 NA Intergenic L1MB1|LINE|L1 23900 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 366-327 chr4 147051502 147051732 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -105731 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 312-301 chr21 18876410 18876642 + 2 NA Intergenic L1PA3|LINE|L1 -116714 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 322-24 chr1 115445254 115445424 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -107103 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 245-306 chr6 102412490 102412721 + 2 NA Intergenic Intergenic 1013620 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 362-278 chr3 106895714 106896016 + 2 NA Intergenic Intergenic 344773 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 336-62 chr10 33788805 33789059 + 2 NA Intergenic MIR|SINE|MIR -16252 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 241-110 chr14 57824097 57824273 + 2 NA intron (NM_001352012, intron 1 of 8) intron (NM_001352012, intron 1 of 8) 40814 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 306-485 chr7 113243378 113243560 + 2 NA Intergenic Intergenic -124887 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 309-342 chr3 34562118 34562290 + 2 NA Intergenic L1MC4a|LINE|L1 763574 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 220-261 chr4 75042839 75043020 + 2 NA intron (NM_015393, intron 3 of 3) intron (NM_015393, intron 3 of 3) 41779 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 273-374 chr5 169461390 169461547 + 2 NA Intergenic L1MC5|LINE|L1 -122305 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 361-325 chr4 74047053 74047300 + 2 NA Intergenic L1MA4A|LINE|L1 8223 NR_026769 10895 Hs.3134 NM_006692 ENSG00000248848 PPBPP2 PPBPL2|SPBPBP pro-platelet basic protein pseudogene 2 pseudo 184-121 chr4 41340940 41341036 + 2 NA Intergenic Intergenic -18619 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 219-290 chr5 92321358 92321572 + 2 NA Intergenic L1MB1|LINE|L1 -938148 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 252-197 chr2 82691271 82691454 + 2 NA Intergenic Intergenic -165441 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 636-3 chr1 59192827 59193282 + 2 NA Intergenic X7A_LINE|LINE|CR1 -46247 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 299-399 chr6 97540155 97540390 + 2 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 234686 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 305-102 chr11 94246829 94247007 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -58719 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 323-63 chr10 79554584 79554826 + 2 NA Intergenic L1M5|LINE|L1 5166 NM_001320814 729238 Hs.523084 NM_001098668 ENSG00000185303 SFTPA2 COLEC5|PSAP|PSP-A|PSPA|SFTP1|SFTPA2B|SP-2A|SP-A|SPA2|SPAII surfactant protein A2 protein-coding 149-34 chr15 86865080 86865208 + 2 NA intron (NM_152336, intron 23 of 24) MIRc|SINE|MIR -67736 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 333-60 chr10 75435129 75435324 + 2 NA intron (NM_001305581, intron 1 of 6) intron (NM_001305581, intron 1 of 6) 3602 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 235-109 chr15 34645117 34645278 + 2 NA Intergenic Intergenic 10567 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 294-484 chr8 139173376 139173652 + 2 NA Intergenic Intergenic -259473 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 418-134 chr2 209833619 209833963 + 2 NA intron (NM_032504, intron 16 of 63) intron (NM_032504, intron 16 of 63) 61798 NM_032504 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 585-134 chr6 10580155 10580577 + 2 NA intron (NM_001491, intron 1 of 2) intron (NM_001491, intron 1 of 2) -5394 NM_145655 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 192-12 chr1 191093118 191093270 + 2 NA Intergenic L1PB4|LINE|L1 135304 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 285-294 chr4 5876354 5876610 + 2 NA intron (NM_001014809, intron 1 of 13) intron (NM_001014809, intron 1 of 13) 11331 NM_001288662 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 234-101 chr14 71917238 71917392 + 2 NA Intergenic Intergenic -14856 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 188-118 chr21 33209321 33209454 + 2 NA Intergenic Intergenic -20508 NM_001289125 3455 Hs.708195 NM_000874 ENSG00000159110 IFNAR2 IFN-R|IFN-alpha-REC|IFNABR|IFNARB|IMD45 interferon alpha and beta receptor subunit 2 protein-coding 415-59 chr12 54514872 54515107 + 2 NA intron (NM_001184976, intron 9 of 30) MIRc|SINE|MIR 16211 NM_001184976 3071 Hs.182014 NM_005337 ENSG00000123338 NCKAP1L HEM1 NCK associated protein 1 like protein-coding 292-434 chr8 100878160 100878370 + 2 NA Intergenic Intergenic 72306 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 190-105 chr20 54286889 54287007 + 2 NA Intergenic Intergenic 78861 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 550-73 chr14 52544180 52544656 + 2 NA intron (NM_001160047, intron 1 of 20) intron (NM_001160047, intron 1 of 20) 8087 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 325-78 chr10 96570316 96570493 + 2 NA intron (NM_020123, intron 2 of 14) intron (NM_020123, intron 2 of 14) 16608 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 283-31 chr1 193427593 193427772 + 2 NA Intergenic Intergenic 122937 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 377-253 chr20 59074595 59074853 + 2 NA Intergenic Intergenic -31878 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 364-452 chr8 117141665 117142002 + 2 NA intron (NM_173851, intron 1 of 7) L1M4b|LINE|L1 6838 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 325-280 chr2 123421791 123422000 + 2 NA Intergenic Intergenic -348414 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 740-57 chr3 128710710 128711225 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -15169 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 470-76 chr14 63038349 63038795 + 2 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 6886 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 283-159 chr16 31649058 31649228 + 2 NA Intergenic Intergenic -51470 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 332-573 chr9 100816293 100816587 + 2 NA Intergenic L2b|LINE|L2 -212287 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 184-60 chr14 81073046 81073185 + 2 NA intron (NM_001142626, intron 3 of 8) L1MEg|LINE|L1 117494 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 473-12 chr1 112147814 112148170 + 2 NA Intergenic Intergenic 157456 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 288-441 chr8 84217672 84217949 + 2 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 33144 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 312-163 chr15 57975739 57975923 + 2 NA intron (NM_170696, intron 6 of 11) L1ME1|LINE|L1 38192 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 210-304 chr9 10405992 10406187 + 2 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 206913 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 300-60 chr11 21269545 21269795 + 2 NA intron (NM_201551, intron 14 of 18) L1MC1|LINE|L1 600084 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 248-126 chr15 49468076 49468225 + 2 NA intron (NM_002009, intron 2 of 3) intron (NM_002009, intron 2 of 3) 44908 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 566-122 chr3 8261154 8261552 + 2 NA intron (NR_033378, intron 3 of 3) L1M4|LINE|L1 240305 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 332-154 chr14 70488972 70489227 + 2 NA Intergenic L1M1|LINE|L1 -5343 NR_037933 317760 Hs.188369 NR_037933 ENSG00000259158 ADAM20P1 C14orf55 ADAM metallopeptidase domain 20 pseudogene 1 pseudo 374-123 chr16 24055148 24055516 + 2 NA intron (NM_002738, intron 5 of 16) intron (NM_002738, intron 5 of 16) -147784 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 275-323 chr7 6696148 6696324 + 2 NA intron (NM_006956, intron 4 of 5) intron (NM_006956, intron 4 of 5) 10711 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 669-60 chr2 225493337 225493752 + 2 NA intron (NM_001371273, intron 3 of 7) intron (NM_001371273, intron 3 of 7) 92658 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 330-326 chr20 57753129 57753311 + 2 NA Intergenic L1MB5|LINE|L1 -41684 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 494-91 chr17 33442964 33443352 + 2 NA intron (NM_001094, intron 1 of 9) L1MB7|LINE|L1 90602 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 265-297 chr5 20293258 20293460 + 2 NA intron (NM_001349556, intron 1 of 13) intron (NM_001349556, intron 1 of 13) -12192 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 526-51 chr11 116551192 116551569 + 2 NA Intergenic MIR3|SINE|MIR -88042 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 556-141 chr3 77175855 77176247 + 2 NA intron (NM_001290039, intron 2 of 26) L2|LINE|L2 78039 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 692-87 chr7 29493209 29493700 + 2 NA intron (NM_001293081, intron 1 of 6) L2b|LINE|L2 9638 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 696-7 chr1 214577242 214577628 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -25760 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 276-132 chr13 86324244 86324446 + 2 NA Intergenic Intergenic -524926 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 296-441 chr7 67779101 67779313 + 2 NA Intergenic L1ME3|LINE|L1 -241046 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 242-169 chr2 41513570 41513739 + 2 NA Intergenic L2a|LINE|L2 -363901 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 165-71 chr22 26932726 26932857 + 2 NA Intergenic Intergenic 29499 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 229-269 chr4 30773861 30774008 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 53565 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 596-143 chr6 146114605 146115136 + 2 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 85672 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 365-416 chr8 137551353 137551538 + 2 NA Intergenic L1MC3|LINE|L1 -137857 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 645-82 chr3 143085030 143085459 + 2 NA Intergenic MER54A|LTR|ERVL -34527 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 277-259 chr3 83037477 83037674 + 2 NA Intergenic L2|LINE|L2 1051433 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 219-331 chr7 41398382 41398549 + 2 NA Intergenic L1MC1|LINE|L1 -295454 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 312-524 chr8 104839096 104839354 + 2 NA Intergenic Intergenic -250201 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 430-82 chr14 49208883 49209162 + 2 NA Intergenic Intergenic 377358 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 390-251 chr3 162846973 162847352 + 2 NA Intergenic Intergenic 456139 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 355-310 chr3 5904784 5905000 + 2 NA Intergenic L1PB1|LINE|L1 -654637 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 523-216 chr5 31653742 31654123 + 2 NA intron (NM_178140, intron 1 of 24) AluSc8|SINE|Alu 14801 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 608-162 chr8 136006805 136007258 + 2 NA Intergenic Intergenic -523767 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 366-69 chr10 130016706 130017004 + 2 NA Intergenic Intergenic -52581 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 363-302 chr3 156179986 156180199 + 2 NA intron (NM_003471, intron 1 of 13) MIR|SINE|MIR 37130 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 244-248 chr3 193746157 193746330 + 2 NA Intergenic AluJo|SINE|Alu 97766 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 546-16 chr10 11337065 11337542 + 2 NA TTS (NM_006561) TTS (NM_006561) 7371 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 290-97 chr12 8509761 8510039 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -3603 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 385-50 chr11 50805458 50805721 + 2 NA Intergenic ALR/Alpha|Satellite|centr 396442 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 566-115 chr21 24886570 24886997 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 46233 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 376-247 chr3 73987138 73987372 + 2 NA Intergenic Intergenic 178011 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 508-117 chr2 163365748 163366200 + 2 NA Intergenic L1MC1|LINE|L1 370034 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 346-57 chr10 123699598 123699913 + 2 NA Intergenic Intergenic 33400 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 749-94 chr8 99398189 99398748 + 2 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 138262 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 308-50 chr10 20436183 20436375 + 2 NA Intergenic Intergenic -115691 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 327-238 chr2 19505737 19506058 + 2 NA Intergenic Intergenic -147274 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 282-199 chr2 44107119 44107360 + 2 NA Intergenic AluSq2|SINE|Alu -61564 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 214-287 chr6 125684557 125684715 + 2 NA intron (NR_038906, intron 3 of 3) intron (NR_038906, intron 3 of 3) 10283 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 300-238 chr20 29717730 29717951 + 2 NA Intergenic ALR/Alpha|Satellite|centr -162544 NR_039689 100616194 NR_039689 ENSG00000266017 MIR4477B - microRNA 4477b ncRNA 313-572 chrX 66384294 66384564 + 2 NA Intergenic Intergenic 216679 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 397-245 chr5 22040469 22040801 + 2 NA intron (NM_004061, intron 5 of 14) L1MA6|LINE|L1 -101717 NR_003921 5369 Hs.247975 NM_031887 ENSG00000168967 PMCHL1 - pro-melanin concentrating hormone like 1 (pseudogene) pseudo 281-445 chr8 126503796 126504011 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 54575 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 270-121 chr15 49362433 49362683 + 2 NA intron (NM_152647, intron 13 of 15) L1PA15|LINE|L1 -60684 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 331-447 chr6 19960387 19960675 + 2 NA Intergenic Intergenic 123161 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 242-37 chr10 58909322 58909562 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -90076 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 427-201 chr5 20343266 20343685 + 2 NA intron (NM_001349558, intron 1 of 15) HERVL-int|LTR|ERVL 37924 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 270-422 chr9 28150901 28151115 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 568297 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 458-127 chr2 49410333 49410767 + 2 NA Intergenic Intergenic -256023 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 460-261 chr6 130457946 130458289 + 2 NA Intergenic MIRb|SINE|MIR 21000 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 243-89 chr12 29111269 29111415 + 2 NA Intergenic L1M2|LINE|L1 -37936 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 514-102 chr15 86668568 86668897 + 2 NA intron (NM_152336, intron 22 of 24) L1MEd|LINE|L1 -264148 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 532-94 chr17 58334261 58334604 + 2 NA intron (NR_038413, intron 1 of 3) intron (NR_038413, intron 1 of 3) 1590 NR_039889 100616220 NR_039889 ENSG00000264399 MIR4736 - microRNA 4736 ncRNA 443-262 chr6 68838536 68838893 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 203432 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 499-49 chr11 109515285 109515673 + 2 NA Intergenic L1PA15|LINE|L1 93289 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 203-139 chr3 8142633 8142781 + 2 NA Intergenic Intergenic -126400 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 506-93 chr15 27721117 27721488 + 2 NA Intergenic AluJb|SINE|Alu 378013 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 442-266 chr6 153782812 153783119 + 2 NA Intergenic Intergenic -227531 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 180-9 chr1 159530529 159530662 + 2 NA Intergenic L2b|LINE|L2 5412 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 803-7 chr10 115742206 115742696 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 452338 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 314-512 chr6 147407954 147408216 + 2 NA Intergenic Intergenic -100605 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 373-207 chr2 133428043 133428385 + 2 NA intron (NM_207481, intron 3 of 17) L1M5|LINE|L1 140249 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 388-305 chr6 71666080 71666315 + 2 NA Intergenic Intergenic -220506 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 300-40 chr10 46000603 46000807 + 2 NA intron (NM_006327, intron 6 of 6) intron (NM_006327, intron 6 of 6) 16097 NR_145721 109616974 NR_145721 ENSG00000265733 SNORA74C-1 - small nucleolar RNA, H/ACA box 74C-1 snoRNA 285-436 chr8 132558487 132558705 + 2 NA Intergenic L1M5|LINE|L1 2883 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 387-387 chr9 28584236 28584588 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 134893 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 329-469 chr5 110339134 110339403 + 2 NA Intergenic MER4D0|LTR|ERV1 174647 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 314-72 chr10 81598141 81598361 + 2 NA Intergenic L1PA12|LINE|L1 -276943 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 333-25 chr1 104223965 104224174 + 2 NA Intergenic Intergenic 151046 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 328-483 chr6 1329740 1329909 + 2 NA Intergenic L1MA8|LINE|L1 17726 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 587-100 chr3 8990998 8991534 + 2 NA intron (NM_014850, intron 20 of 21) intron (NM_014850, intron 20 of 21) -27794 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 291-136 chr14 76795329 76795545 + 2 NA intron (NM_001370747, intron 9 of 11) L1M5|LINE|L1 -8713 NR_104183 100506603 Hs.673984 NR_104183 ENSG00000258301 VASH1-AS1 - VASH1 antisense RNA 1 ncRNA 379-243 chr4 92009045 92009272 + 2 NA Intergenic MLT2A1|LTR|ERVL 268144 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 240-209 chr2 42867610 42867795 + 2 NA Intergenic Intergenic -75119 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 336-533 chr8 30195896 30196218 + 2 NA Intergenic L1MB5|LINE|L1 39688 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 291-159 chr16 50705129 50705307 + 2 NA intron (NR_163434, intron 2 of 12) HAL1|LINE|L1 5838 NM_001293557 64127 Hs.592072 NM_022162 ENSG00000167207 NOD2 ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS nucleotide binding oligomerization domain containing 2 protein-coding 257-314 chr5 12510575 12510781 + 2 NA Intergenic L1PA11|LINE|L1 -64179 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 299-424 chr7 66250224 66250517 + 2 NA intron (NM_003596, intron 2 of 5) intron (NM_003596, intron 2 of 5) 45036 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 267-140 chr16 86177110 86177305 + 2 NA Intergenic Intergenic -18974 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 300-297 chr3 162423482 162423731 + 2 NA Intergenic L1ME3A|LINE|L1 879695 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 328-273 chr2 107341124 107341420 + 2 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 8253 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 634-110 chr4 32444278 32444731 + 2 NA Intergenic Intergenic 93466 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 307-311 chr3 128422408 128422638 + 2 NA Intergenic Intergenic -41071 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 559-126 chr3 119010332 119010740 + 2 NA intron (NM_001353319, intron 1 of 7) MLT2B1|LTR|ERVL 24310 NM_001015887 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 486-318 chr9 119946359 119946686 + 2 NA Intergenic MIR|SINE|MIR 11462 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 206-201 chr5 37007140 37007303 + 2 NA intron (NM_015384, intron 17 of 45) intron (NM_015384, intron 17 of 45) 130452 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 254-380 chr7 43771039 43771243 + 2 NA 5' UTR (NM_000712, exon 2 of 8) 5' UTR (NM_000712, exon 2 of 8) 12461 NM_000712 644 Hs.488143 NM_000712 ENSG00000106605 BLVRA BLVR|BVR|BVRA biliverdin reductase A protein-coding 342-33 chr1 165302911 165303195 + 2 NA intron (NM_177398, intron 3 of 8) L4_C_Mam|LINE|RTE-X 53188 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 242-392 chr8 76766128 76766274 + 2 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -82926 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 200-131 chr2 71866246 71866373 + 2 NA Intergenic Intergenic 281553 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 272-389 chr6 80392587 80392855 + 2 NA Intergenic Intergenic 286050 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 382-446 chrX 66439074 66439385 + 2 NA Intergenic Intergenic 176801 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 356-7 chr1 49429768 49429983 + 2 NA intron (NR_046839, intron 2 of 3) AluJb|SINE|Alu 42210 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 353-487 chr7 52480904 52481152 + 2 NA Intergenic Intergenic -554605 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 358-442 chr7 64459234 64459565 + 2 NA Intergenic Intergenic 25706 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 280-389 chr7 91502226 91502415 + 2 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat 237887 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 316-330 chr21 17068912 17069147 + 2 NA Intergenic Intergenic -369861 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 360-292 chr3 14035875 14036181 + 2 NA intron (NR_002223, intron 1 of 2) AluJo|SINE|Alu 88842 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 335-38 chr1 247199478 247199740 + 2 NA Intergenic Intergenic 2451 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 229-84 chr12 4968039 4968216 + 2 NA Intergenic Intergenic 58222 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 339-219 chr17 74507596 74507886 + 2 NA Intergenic L1M1|LINE|L1 23734 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 771-67 chr5 23911380 23911980 + 2 NA Intergenic L1PA7|LINE|L1 -39668 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 378-243 chr2 124218786 124218990 + 2 NA intron (NM_130773, intron 1 of 23) L2b|LINE|L2 193601 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 653-28 chr11 100382969 100383417 + 2 NA Intergenic Intergenic -304095 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 242-428 chr9 26303225 26303362 + 2 NA Intergenic Intergenic 236618 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 519-142 chr3 21203409 21203781 + 2 NA Intergenic L1MA4A|LINE|L1 -202131 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 269-293 chr4 113825066 113825244 + 2 NA Intergenic Intergenic -63228 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 429-132 chr19 8850009 8850360 + 2 NA intron (NM_024690, intron 83 of 83) AluSx|SINE|Alu 7591 NM_145208 85509 Hs.133912 NM_145208 ENSG00000170948 MBD3L1 MBD3L methyl-CpG binding domain protein 3 like 1 protein-coding 273-385 chr6 40552216 40552439 + 2 NA intron (NM_020737, intron 1 of 2) MER5A1|DNA|hAT-Charlie 35037 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 638-5 chr1 88429557 88430120 + 2 NA Intergenic L1MA4A|LINE|L1 -254306 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 224-277 chr6 54567317 54567465 + 2 NA Intergenic L1MCb|LINE|L1 258950 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 435-169 chr4 66531390 66531679 + 2 NA Intergenic Intergenic 254710 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 523-33 chr10 59861694 59862142 + 2 NA intron (NM_005436, intron 1 of 8) L1MCc|LINE|L1 44638 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 847-37 chr5 8258142 8258625 + 2 NA Intergenic Intergenic 199181 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 889-13 chr14 54966902 54967623 + 2 NA intron (NM_007086, intron 17 of 25) intron (NM_007086, intron 17 of 25) 59837 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 245-361 chr8 143199376 143199582 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -13739 NM_001301772 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 386-34 chr10 44695635 44695979 + 2 NA Intergenic LTR85b|LTR|Gypsy? -215509 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 312-52 chr10 81432908 81433170 + 2 NA Intergenic Intergenic -442155 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 357-368 chr5 156706995 156707297 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -143149 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 190-143 chr5 19669625 19669810 + 2 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 216555 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 200-196 chr4 106428392 106428576 + 2 NA Intergenic Intergenic -5140 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 275-41 chr10 49074048 49074217 + 2 NA intron (NM_001031746, intron 4 of 7) MER20B|DNA|hAT-Charlie 41390 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 199-107 chr2 44586885 44587051 + 2 NA intron (NM_024766, intron 3 of 10) L1ME1|LINE|L1 225021 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 460-169 chr20 6137123 6137553 + 2 NA Intergenic Intergenic -13794 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 542-14 chr1 237516868 237517274 + 2 NA intron (NM_001035, intron 24 of 104) L2b|LINE|L2 45952 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 319-379 chr4 72754555 72754819 + 2 NA Intergenic L1PA13|LINE|L1 -185466 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 142-13 chr12 22450160 22450231 + 2 NA intron (NM_001286176, intron 26 of 26) L1ME3Cz|LINE|L1 94002 NM_001286174 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 233-53 chr11 31413093 31413265 + 2 NA intron (NM_181706, intron 2 of 4) intron (NM_181706, intron 2 of 4) 43319 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 149-65 chr3 6184285 6184379 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 621117 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 270-252 chr3 176125052 176125256 + 2 NA Intergenic L1MB7|LINE|L1 -119397 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 504-31 chr10 94990854 94991195 + 2 NA TTS (NM_000771) TTS (NM_000771) 52366 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 205-123 chr18 5765491 5765667 + 2 NA intron (NR_038839, intron 2 of 4) intron (NR_038839, intron 2 of 4) 16760 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 375-358 chr6 115424994 115425285 + 2 NA Intergenic Intergenic 218696 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 448-266 chr7 82846022 82846334 + 2 NA intron (NM_033026, intron 12 of 24) intron (NM_033026, intron 12 of 24) 316706 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 206-159 chr3 57623807 57623983 + 2 NA intron (NM_001322176, intron 2 of 2) intron (NM_001322176, intron 2 of 2) 26106 NR_132370 106144532 Hs.667207 NR_132369 ENSG00000272146 ARF4-AS1 - ARF4 antisense RNA 1 ncRNA 292-45 chr10 60286729 60286956 + 2 NA intron (NM_001204403, intron 2 of 43) MERX|DNA|TcMar-Tigger 103033 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 427-258 chr8 87180820 87181203 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 314596 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 231-96 chr14 66078033 66078216 + 2 NA Intergenic Intergenic -408247 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 412-345 chr9 85236914 85237132 + 2 NA Intergenic Intergenic 505006 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 236-53 chr10 100583484 100583653 + 2 NA Intergenic L1ME1|LINE|L1 47625 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 179-110 chr7 52457617 52457763 + 2 NA Intergenic L1MC5a|LINE|L1 -577943 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 284-425 chr8 137148440 137148695 + 2 NA Intergenic Intergenic 265021 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 322-172 chr15 54914954 54915157 + 2 NA Intergenic Intergenic -141692 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 328-278 chr2 129690396 129690700 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 186943 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 452-10 chr1 113550652 113551058 + 2 NA intron (NM_001142782, intron 2 of 20) intron (NM_001142782, intron 2 of 20) 160340 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 308-8 chr1 41288457 41288744 + 2 NA Intergenic MIRb|SINE|MIR -46294 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 213-30 chr10 27004592 27004714 + 2 NA 3' UTR (NM_001256053, exon 34 of 34) 3' UTR (NM_001256053, exon 34 of 34) -62652 NR_026795 387644 Hs.529965 NR_026795 ENSG00000283709 FAM238C C10orf51|LINC00202|LINC00202-1|NCRNA00202|bB27G4.1 family with sequence similarity 238 member C ncRNA 178-96 chr4 60617234 60617399 + 2 NA Intergenic Intergenic -305303 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 461-299 chrX 98124290 98124634 + 2 NA Intergenic L1MB7|LINE|L1 -559927 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 292-481 chrX 135458861 135459111 + 2 NA Intergenic L1MB5|LINE|L1 37042 NM_203306 399668 Hs.374414 NM_203306 ENSG00000178947 SMIM10L2A LED|LINC00086|LINC00087|LINC0086|NCRNA00086|NCRNA00087|SMIM10L2B small integral membrane protein 10 like 2A protein-coding 423-185 chr3 187549195 187549537 + 2 NA Intergenic Intergenic 102320 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 317-302 chr3 61438669 61438871 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger -122801 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 279-333 chr5 100845548 100845810 + 2 NA intron (NM_005668, intron 4 of 4) intron (NM_005668, intron 4 of 4) -29114 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 197-215 chr8 130930442 130930604 + 2 NA intron (NM_001115, intron 5 of 17) AluY|SINE|Alu 110386 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 469-240 chr6 41214597 41214915 + 2 NA intron (NR_027256, intron 3 of 4) LTR10A|LTR|ERV1 3191 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 281-225 chr2 123772386 123772571 + 2 NA Intergenic LTR50|LTR|ERVL 252696 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 312-113 chr12 112593460 112593739 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 18363 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 395-33 chr10 28910714 28911034 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner 64466 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 293-471 chr9 80259434 80259720 + 2 NA Intergenic L1MA9|LINE|L1 284554 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 207-270 chr7 48219670 48219848 + 2 NA intron (NM_152701, intron 4 of 61) intron (NM_152701, intron 4 of 61) 48301 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 359-263 chr2 205004973 205005182 + 2 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 459602 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 419-39 chr10 95070496 95070814 + 2 NA Intergenic Intergenic -1158 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 196-210 chr5 101503341 101503530 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -600153 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 545-12 chr1 189850871 189851266 + 2 NA Intergenic Intergenic 624942 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 347-374 chr5 15758667 15758868 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -143765 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 389-188 chr2 164374997 164375330 + 2 NA Intergenic Intergenic 193332 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 234-198 chr2 196164136 196164280 + 2 NA intron (NM_004226, intron 1 of 7) intron (NM_004226, intron 1 of 7) 7370 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 405-25 chr10 25536348 25536569 + 2 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -115254 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 272-492 chrX 111783657 111783866 + 2 NA intron (NM_012471, intron 7 of 10) L1ME1|LINE|L1 -92290 NM_001195576 100329135 Hs.247868 NM_001195576 ENSG00000204025 TRPC5OS TRPC5-AS1 TRPC5 opposite strand protein-coding 360-424 chr6 146486229 146486446 + 2 NA Intergenic L1MC4|LINE|L1 -57496 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 262-333 chr5 4268863 4269063 + 2 NA Intergenic MIR3|SINE|MIR -504518 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 485-19 chr1 203196867 203197303 + 2 NA Intergenic L2c|LINE|L2 -10381 NM_001276 1116 Hs.382202 NM_001276 ENSG00000133048 CHI3L1 ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YK-40|YKL-40|YKL40|YYL-40|hCGP-39 chitinase 3 like 1 protein-coding 167-84 chr4 174652368 174652496 + 2 NA intron (NM_001042543, intron 8 of 8) intron (NM_001042543, intron 8 of 8) -129534 NM_001145816 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 518-298 chr8 79016718 79017149 + 2 NA Intergenic L1MA2|LINE|L1 179404 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 280-306 chr5 8000936 8001106 + 2 NA Intergenic L1M1|LINE|L1 131873 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 260-277 chr3 97556745 97556995 + 2 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 117263 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 342-477 chr7 13678885 13679162 + 2 NA Intergenic L1MC1|LINE|L1 307491 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 278-405 chr7 119946939 119947128 + 2 NA Intergenic LTR68|LTR|ERV1 -39658 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 214-53 chr10 123191633 123191841 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 37335 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 243-184 chr19 29305611 29305732 + 2 NA intron (NR_040029, intron 9 of 9) L1MEd|LINE|L1 -92520 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 223-238 chr4 22826067 22826237 + 2 NA Intergenic L1MA7|LINE|L1 112063 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 393-78 chr13 38808485 38808732 + 2 NA intron (NM_207361, intron 6 of 23) Tigger1|DNA|TcMar-Tigger 18983 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 256-453 chr9 80260351 80260581 + 2 NA Intergenic L1MA9|LINE|L1 285443 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 374-411 chr9 32313817 32314059 + 2 NA Intergenic L1MA2|LINE|L1 -70665 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 350-125 chr14 27279707 27279996 + 2 NA Intergenic Intergenic -332737 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 468-18 chr1 225231959 225232270 + 2 NA intron (NM_001367479, intron 42 of 85) L1ME3E|LINE|L1 195924 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 683-74 chr6 117375710 117376226 + 2 NA intron (NM_002944, intron 17 of 42) L1ME2|LINE|L1 49887 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 322-227 chr19 34751963 34752140 + 2 NA Intergenic HERVL74-int|LTR|ERVL 17808 NM_001029997 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 251-184 chr2 143902899 143903053 + 2 NA Intergenic Intergenic -34091 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 188-91 chr2 35701258 35701404 + 2 NA Intergenic L1M8|LINE|L1 229926 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 486-14 chr1 190853230 190853588 + 2 NA Intergenic L1PA16|LINE|L1 228519 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 280-69 chr11 15504658 15504866 + 2 NA Intergenic L1PA16|LINE|L1 -139123 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 293-226 chr20 4025070 4025260 + 2 NA Intergenic HAL1|LINE|L1 -9607 NM_007219 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 259-248 chr3 60131970 60132225 + 2 NA intron (NM_001320900, intron 6 of 9) L2b|LINE|L2 -51188 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 159-92 chr8 67861859 67861947 + 2 NA Intergenic Intergenic -90143 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 294-453 chr8 25547119 25547292 + 2 NA Intergenic Intergenic 87972 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 566-169 chr6 139495917 139496245 + 2 NA Intergenic Intergenic -21485 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 266-251 chr3 86603196 86603385 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 121347 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 272-274 chr3 98446758 98446910 + 2 NA Intergenic Intergenic -22646 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 125-48 chr4 86146944 86147061 + 2 NA intron (NR_110879, intron 3 of 3) L2a|LINE|L2 27196 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 205-227 chr5 101403574 101403766 + 2 NA Intergenic Intergenic -500388 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 355-284 chr20 41941348 41941544 + 2 NA Intergenic MIRb|SINE|MIR -323069 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 286-153 chr17 28163611 28163826 + 2 NA intron (NM_016231, intron 5 of 10) intron (NM_016231, intron 5 of 10) -62845 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 341-187 chr16 54809635 54809896 + 2 NA Intergenic Intergenic 38468 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 236-83 chr12 28306896 28307037 + 2 NA intron (NM_001352082, intron 6 of 13) intron (NM_001352082, intron 6 of 13) -116228 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 453-199 chr5 22488539 22488925 + 2 NA intron (NM_004061, intron 2 of 14) MER74A|LTR|ERVL -274882 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 319-381 chr4 77525294 77525584 + 2 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 13686 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 159-100 chr9 27296805 27296933 + 2 NA intron (NM_001161585, intron 1 of 6) intron (NM_001161585, intron 1 of 6) 270 NM_001161585 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 400-236 chr3 194530451 194530714 + 2 NA Intergenic L1ME1|LINE|L1 43442 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 275-211 chr2 187176410 187176667 + 2 NA Intergenic MER52-int|LTR|ERV1 271714 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 369-108 chr14 46217176 46217403 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 153130 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 327-54 chr10 67173873 67174089 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 161715 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 299-279 chr3 74954731 74954940 + 2 NA Intergenic L1M5|LINE|L1 -259641 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 285-431 chr8 127431106 127431373 + 2 NA intron (NR_117100, intron 4 of 5) intron (NR_117100, intron 4 of 5) 15414 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 217-385 chr9 22138772 22138948 + 2 NA Intergenic Intergenic -129547 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 310-257 chr2 123698349 123698520 + 2 NA Intergenic Intergenic 326740 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 364-115 chr13 31665817 31666001 + 2 NA Intergenic L1MC4a|LINE|L1 -73617 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 145-33 chr16 76842067 76842158 + 2 NA Intergenic L1PA15|LINE|L1 -26824 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 264-429 chr8 129924483 129924666 + 2 NA intron (NM_001353256, intron 2 of 13) LTR78|LTR|ERV1 15237 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 139-34 chr16 51703733 51703854 + 2 NA Intergenic L2c|LINE|L2 -58726 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 522-187 chr4 31365553 31366047 + 2 NA Intergenic Intergenic -140744 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 227-277 chr5 23570354 23570574 + 2 NA Intergenic Intergenic 62809 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 329-161 chr14 57195097 57195354 + 2 NA Intergenic L1ME3A|LINE|L1 73680 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 254-422 chr8 112498099 112498257 + 2 NA intron (NM_001363185, intron 28 of 66) MIRb|SINE|MIR -145315 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 132-69 chr6 69588617 69588693 + 2 NA Intergenic Intergenic 207811 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 250-216 chr2 106943776 106943978 + 2 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -56768 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 328-619 chr9 132471054 132471282 + 2 NA intron (NM_001282957, intron 1 of 5) intron (NM_001282957, intron 1 of 5) 60957 NM_001282957 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 249-216 chr2 139428656 139428863 + 2 NA Intergenic Intergenic 531435 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 268-94 chr12 72921609 72921816 + 2 NA Intergenic Intergenic -237478 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 383-221 chr20 18082869 18083223 + 2 NA Intergenic L2c|LINE|L2 -23858 NM_001303462 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 263-131 chr16 47570782 47571004 + 2 NA intron (NM_001031835, intron 8 of 31) L1PB3|LINE|L1 109562 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 197-181 chr6 19797256 19797362 + 2 NA intron (NR_134651, intron 2 of 3) L1MD2|LINE|L1 7450 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 262-401 chr7 55422176 55422380 + 2 NA intron (NM_018697, intron 6 of 8) L1MEf|LINE|L1 56830 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 273-453 chr8 111969983 111970171 + 2 NA Intergenic L1MA8|LINE|L1 593438 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 349-110 chr12 4379289 4379516 + 2 NA exon (NM_020638, exon 1 of 3) exon (NM_020638, exon 1 of 3) 310 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 233-155 chr2 9078055 9078281 + 2 NA Intergenic Intergenic -74484 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 362-225 chr2 116071163 116071408 + 2 NA Intergenic MIRb|SINE|MIR 727470 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 258-44 chr10 26151227 26151399 + 2 NA intron (NM_017433, intron 23 of 34) L1MA10|LINE|L1 -64994 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 442-38 chr10 130249075 130249399 + 2 NA Intergenic L1MC5|LINE|L1 112828 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 255-37 chr10 83810140 83810379 + 2 NA Intergenic Intergenic -133170 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 240-131 chr14 26271690 26271888 + 2 NA Intergenic Intergenic 281641 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 351-197 chr19 34707223 34707484 + 2 NA Intergenic L1P3|LINE|L1 -26890 NM_001145665 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 350-531 chr8 117776689 117777011 + 2 NA Intergenic L1PREC2|LINE|L1 144063 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 233-344 chr6 133872709 133872928 + 2 NA intron (NR_109982, intron 1 of 8) intron (NR_109982, intron 1 of 8) 16188 NR_109982 100507308 Hs.102408 NR_109982 ENSG00000227954 TARID EYA4-AS1 TCF21 antisense RNA inducing promoter demethylation ncRNA 301-385 chr5 170844330 170844579 + 2 NA Intergenic L1MB8|LINE|L1 -17564 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 211-192 chr3 99758408 99758592 + 2 NA intron (NM_001850, intron 3 of 4) intron (NM_001850, intron 3 of 4) -59362 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 187-42 chr13 31559235 31559360 + 2 NA Intergenic L1MEc|LINE|L1 -180229 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 254-117 chr14 66828743 66828968 + 2 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) 321448 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 166-43 chr19 36879643 36879738 + 2 NA TTS (NM_003419) TTS (NM_003419) 28039 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 323-504 chr7 78753894 78754092 + 2 NA intron (NM_001301128, intron 2 of 20) L1MEf|LINE|L1 -254995 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 391-374 chr9 24372821 24373187 + 2 NA Intergenic Intergenic 172672 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 318-55 chr10 32779151 32779337 + 2 NA intron (NM_001321115, intron 30 of 43) intron (NM_001321115, intron 30 of 43) 122228 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 728-63 chr3 145563303 145563752 + 2 NA Intergenic L1MA9|LINE|L1 505658 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 228-3 chr1 39754660 39754876 + 2 NA non-coding (NR_036543, exon 10 of 10) non-coding (NR_036543, exon 10 of 10) 15923 NR_036543 10450 Hs.524690 NM_006112 ENSG00000084072 PPIE CYP-33|CYP33 peptidylprolyl isomerase E protein-coding 261-234 chr3 38043015 38043200 + 2 NA intron (NM_007335, intron 1 of 36) MIR|SINE|MIR 3899 NM_001321153 9940 Hs.714499 NM_007335 ENSG00000008226 DLEC1 CFAP81|DLC-1|DLC1|F56 DLEC1 cilia and flagella associated protein protein-coding 226-58 chr11 98273450 98273668 + 2 NA Intergenic Intergenic -747390 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 412-214 chr3 98688442 98688706 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -43662 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 532-270 chr8 78050534 78050879 + 2 NA Intergenic L1PB4|LINE|L1 -465634 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 237-307 chr5 115735913 115736136 + 2 NA Intergenic Intergenic -63372 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 302-150 chr15 95560528 95560687 + 2 NA Intergenic (TATAT)n|Simple_repeat|Simple_repeat 127514 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 243-416 chr7 41233203 41233436 + 2 NA Intergenic Intergenic 131715 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 357-352 chr5 102181192 102181440 + 2 NA Intergenic L1M3|LINE|L1 114968 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 257-417 chr8 117826135 117826323 + 2 NA intron (NM_000127, intron 4 of 10) intron (NM_000127, intron 4 of 10) 94684 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 248-341 chr6 35543674 35543858 + 2 NA Intergenic Intergenic -30870 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 385-278 chr4 87827430 87827667 + 2 NA intron (NM_001184694, intron 1 of 3) intron (NM_001184694, intron 1 of 3) -5421 NM_020203 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 491-30 chr11 21805850 21806253 + 2 NA Intergenic Intergenic -387034 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 452-245 chr7 41229430 41229859 + 2 NA Intergenic L1PB1|LINE|L1 128040 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 224-220 chr4 54535853 54536063 + 2 NA Intergenic Intergenic 71173 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 279-438 chr9 73699717 73699948 + 2 NA Intergenic Intergenic 547967 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 273-309 chr3 181477832 181478088 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -35474 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 266-404 chr8 5765394 5765568 + 2 NA Intergenic L1MC1|LINE|L1 641067 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 286-218 chr2 129201730 129201974 + 2 NA Intergenic L1MC3|LINE|L1 72039 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 185-70 chr16 76688558 76688709 + 2 NA Intergenic Intergenic 53635 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 201-93 chr15 96385367 96385508 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 51672 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 236-158 chr19 56498290 56498454 + 2 NA Intergenic Intergenic -9483 NM_020813 57573 Hs.230188 NM_020813 ENSG00000196263 ZNF471 ERP1|Z1971 zinc finger protein 471 protein-coding 468-44 chr11 23121148 23121530 + 2 NA Intergenic HAL1|LINE|L1 -260865 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 279-191 chr2 114878847 114879066 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -45408 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 401-148 chr2 5931898 5932127 + 2 NA promoter-TSS (NR_026832) promoter-TSS (NR_026832) -675 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 315-23 chr1 147444399 147444571 + 2 NA intron (NR_038423, intron 3 of 3) L1MB4|LINE|L1 73390 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 597-34 chr11 26112491 26113003 + 2 NA Intergenic MER67A|LTR|ERV1 -76376 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 477-111 chr16 71183389 71183717 + 2 NA intron (NM_017558, intron 3 of 19) L1M7|LINE|L1 47169 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 426-183 chr3 80049093 80049450 + 2 NA Intergenic Intergenic -281273 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 382-182 chr2 40335108 40335408 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 95046 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 357-244 chr21 16697159 16697460 + 2 NA Intergenic Intergenic 107072 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 238-84 chr12 91103013 91103192 + 2 NA 3' UTR (NM_002345, exon 3 of 3) 3' UTR (NM_002345, exon 3 of 3) 8392 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 459-259 chr6 67954327 67954752 + 2 NA Intergenic Intergenic -100812 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 281-378 chr5 162859232 162859500 + 2 NA Intergenic L1MB8|LINE|L1 -578205 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 489-126 chr2 35306403 35306699 + 2 NA Intergenic Intergenic -164854 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 392-90 chr15 36926749 36927090 + 2 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) -40386 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 339-272 chr2 108629425 108629667 + 2 NA intron (NM_001193484, intron 1 of 9) intron (NM_001193484, intron 1 of 9) 8295 NM_001193484 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 612-105 chr4 96455998 96456413 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 145502 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 232-210 chr20 7623035 7623208 + 2 NA Intergenic L1ME3Cz|LINE|L1 251513 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 585-174 chr9 107866687 107867180 + 2 NA Intergenic Intergenic -377164 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 233-102 chr14 76142009 76142198 + 2 NA Intergenic AluJb|SINE|Alu -9782 NM_001322032 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 269-285 chr4 91952623 91952871 + 2 NA Intergenic Intergenic 324555 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 363-385 chr6 9630107 9630399 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -774249 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 348-459 chr6 94099806 94100010 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 381605 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 475-164 chr21 25727327 25727649 + 2 NA intron (NM_001003703, intron 2 of 3) MIR|SINE|MIR -7484 NM_001197297 2551 Hs.473470 NM_002040 ENSG00000154727 GABPA E4TF1-60|E4TF1A|NFT2|NRF2|NRF2A|RCH04A07 GA binding protein transcription factor subunit alpha protein-coding 313-343 chr3 62921520 62921691 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -46189 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 318-587 chrX 52039830 52040109 + 2 NA Intergenic L1M1|LINE|L1 23504 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 278-268 chr3 36034803 36034994 + 2 NA Intergenic L1MA6|LINE|L1 290422 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 339-250 chr2 50093774 50093993 + 2 NA intron (NM_001330093, intron 18 of 22) MIR|SINE|MIR -119680 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 339-576 chr8 89339505 89339688 + 2 NA Intergenic L1MA2|LINE|L1 418115 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 253-105 chr12 62428522 62428708 + 2 NA Intergenic L1MB1|LINE|L1 -38211 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 188-184 chr6 105632336 105632430 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -229301 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 341-578 chrX 82869330 82869594 + 2 NA Intergenic L1PB3|LINE|L1 -638828 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 259-245 chr3 39720220 39720358 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -88625 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 546-31 chr10 129587618 129588024 + 2 NA intron (NM_002412, intron 2 of 4) L1ME1|LINE|L1 120580 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 609-22 chr12 29668647 29669117 + 2 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 115060 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 448-157 chr3 64100018 64100292 + 2 NA non-coding (NR_045697, exon 3 of 3) non-coding (NR_045697, exon 3 of 3) -3315 NR_046701 100874242 Hs.668874 NR_046701 PRICKLE2-AS2 - PRICKLE2 antisense RNA 2 ncRNA 336-284 chr2 123948764 123948946 + 2 NA Intergenic L1MA1|LINE|L1 76319 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 355-23 chr1 200402020 200402298 + 2 NA Intergenic Intergenic 7877 NM_001281294 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 481-259 chr6 22018845 22019297 + 2 NA intron (NR_015410, intron 6 of 11) intron (NR_015410, intron 6 of 11) 128122 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 305-270 chr2 128420002 128420296 + 2 NA Intergenic HAL1ME|LINE|L1 -101281 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 228-170 chr2 104476108 104476259 + 2 NA intron (NR_015399, intron 1 of 3) MLT1G3|LTR|ERVL-MaLR 34326 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 310-211 chr19 23175394 23175661 + 2 NA Intergenic MER57A-int|LTR|ERV1 58502 NM_001277403 100129543 Hs.427120 NM_001277403 ENSG00000183850 ZNF730 - zinc finger protein 730 protein-coding 383-103 chr14 33514104 33514297 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -194737 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 348-153 chr15 27736150 27736389 + 2 NA Intergenic L1ME3A|LINE|L1 363046 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 309-460 chr5 140329905 140330168 + 2 NA Intergenic Intergenic 16567 NM_001945 1839 Hs.799 NM_001945 ENSG00000113070 HBEGF DTR|DTS|DTSF|HEGFL heparin binding EGF like growth factor protein-coding 380-315 chr5 125799241 125799500 + 2 NA Intergenic Intergenic 306109 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 288-483 chrX 134649664 134649818 + 2 NA intron (NM_001316887, intron 2 of 3) intron (NM_001316887, intron 2 of 3) 8730 NM_021796 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2B|OOSP2L placenta enriched 1 protein-coding 183-170 chr9 30953094 30953225 + 2 NA Intergenic Intergenic 428331 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 247-76 chr12 9083773 9083994 + 2 NA intron (NM_000014, intron 22 of 35) L1MA7|LINE|L1 18706 NR_137425 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 291-506 chrX 146500810 146500974 + 2 NA Intergenic Intergenic -308879 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 279-266 chr3 100155450 100155619 + 2 NA intron (NM_001167924, intron 2 of 9) HAL1|LINE|L1 -30290 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 292-382 chr6 69416411 69416640 + 2 NA Intergenic L1PB1|LINE|L1 379941 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 576-28 chr12 12857711 12858199 + 2 NA Intergenic L1ME4b|LINE|L1 -17522 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 321-113 chr11 115487509 115487827 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 16747 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 150-57 chr20 42798168 42798301 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) 112751 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 306-138 chr14 32586452 32586647 + 2 NA intron (NM_004274, intron 5 of 13) AluSz|SINE|Alu 257251 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 234-69 chr11 127873947 127874091 + 2 NA Intergenic Intergenic -334747 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 318-173 chr14 71303705 71303970 + 2 NA Intergenic Intergenic -16639 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 372-317 chr3 16959576 16959806 + 2 NA intron (NM_015184, intron 1 of 5) intron (NM_015184, intron 1 of 5) 26495 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 321-241 chr18 2799324 2799619 + 2 NA intron (NM_015295, intron 47 of 47) intron (NM_015295, intron 47 of 47) -47535 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 331-112 chr12 29497819 29498063 + 2 NA 5' UTR (NM_001353179, exon 1 of 26) 5' UTR (NM_001353179, exon 1 of 26) 1752 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 340-508 chr7 71225833 71226115 + 2 NA intron (NM_022479, intron 1 of 10) L1ME4a|LINE|L1 -81700 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 300-273 chr3 77681659 77681840 + 2 NA Intergenic LTR8|LTR|ERV1 367214 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 343-24 chr1 108533061 108533331 + 2 NA Intergenic L2b|LINE|L2 -26904 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 494-141 chr2 187740073 187740520 + 2 NA Intergenic Intergenic -185791 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 240-221 chr2 96087848 96088028 + 2 NA Intergenic L1MB7|LINE|L1 28633 NM_000682 151 Hs.247686 NM_000682 ENSG00000274286 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR adrenoceptor alpha 2B protein-coding 531-120 chr2 146195334 146195801 + 2 NA Intergenic AluJb|SINE|Alu -391490 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 235-112 chr15 56273512 56273677 + 2 NA Intergenic L1MEf|LINE|L1 -28512 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 400-42 chr10 113587173 113587432 + 2 NA intron (NM_001177660, intron 12 of 12) AluSx|SINE|Alu 34249 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 258-62 chr10 125391652 125391861 + 2 NA Intergenic Intergenic -182615 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 363-150 chr14 97318809 97319106 + 2 NA Intergenic Intergenic -139859 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 623-18 chr10 125252781 125253335 + 2 NA Intergenic (ATCC)n|Simple_repeat|Simple_repeat -92028 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 388-70 chr11 100362501 100362810 + 2 NA Intergenic L1PA16|LINE|L1 -324633 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 526-180 chr4 42320813 42321318 + 2 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 70203 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 269-139 chr15 94301691 94301884 + 2 NA intron (NM_018349, intron 1 of 21) intron (NM_018349, intron 1 of 21) 3586 NM_001159643 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 429-281 chr7 97408204 97408615 + 2 NA Intergenic Intergenic 291816 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 418-304 chr9 31300261 31300541 + 2 NA Intergenic Intergenic 81089 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 269-349 chr6 73783663 73783914 + 2 NA exon (NM_133493, exon 19 of 33) exon (NM_133493, exon 19 of 33) 87585 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 293-111 chr14 29912522 29912709 + 2 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 14481 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 348-99 chr11 109959972 109960317 + 2 NA Intergenic Intergenic -133248 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 290-312 chr4 58868135 58868292 + 2 NA Intergenic Intergenic -116069 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 327-340 chr3 127993910 127994184 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -58390 NM_013336 29927 Hs.518236 NM_013336 ENSG00000058262 SEC61A1 HNFJ4|HSEC61|SEC61|SEC61A SEC61 translocon alpha 1 subunit protein-coding 277-160 chr18 11444888 11445097 + 2 NA Intergenic Intergenic -9486 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 209-224 chr4 56810066 56810236 + 2 NA exon (NM_001271718, exon 4 of 4) exon (NM_001271718, exon 4 of 4) 11322 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 345-167 chr14 100941493 100941806 + 2 NA TTS (NR_003235) TTS (NR_003235) 523 NR_003235 767567 NR_003235 ENSG00000200632 SNORD113-7 14q(I-7) small nucleolar RNA, C/D box 113-7 snoRNA 259-2 chr1 18829672 18829826 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 29912 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 355-16 chr1 104256707 104257020 + 2 NA Intergenic Intergenic 183840 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 491-58 chr13 48737942 48738364 + 2 NA Intergenic Intergenic 84224 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 311-343 chr3 62963866 62964097 + 2 NA Intergenic Intergenic -88565 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 319-184 chr16 85539135 85539409 + 2 NA Intergenic Intergenic -72137 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 270-174 chr2 6544878 6545142 + 2 NA Intergenic L2b|LINE|L2 88777 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 378-66 chr10 90989834 90990151 + 2 NA intron (NR_131214, intron 4 of 5) L1ME3Cz|LINE|L1 42692 NR_131214 105378427 NR_131214 XLOC_008559 - uncharacterized LOC105378427 ncRNA 490-66 chr12 17368757 17369226 + 2 NA Intergenic Intergenic 220087 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 168-99 chr6 119967695 119967830 + 2 NA Intergenic L1MC3|LINE|L1 -47417 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 264-348 chr6 2607599 2607818 + 2 NA Intergenic L1ME4b|LINE|L1 -26792 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 225-249 chr4 95279043 95279180 + 2 NA intron (NM_003728, intron 3 of 15) intron (NM_003728, intron 3 of 15) 187620 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 171-115 chr6 97521864 97521994 + 2 NA intron (NR_110757, intron 1 of 4) L1ME1|LINE|L1 216343 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 201-102 chr17 54008350 54008511 + 2 NA Intergenic Intergenic 185503 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 465-266 chr7 10332769 10333216 + 2 NA Intergenic L2c|LINE|L2 -369684 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 131-67 chr6 48702648 48702724 + 2 NA Intergenic Intergenic -633997 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 287-326 chr5 110713338 110713505 + 2 NA intron (NM_001039763, intron 1 of 13) L1MA2|LINE|L1 13250 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 611-2 chr1 70768837 70769402 + 2 NA intron (NR_125938, intron 5 of 6) L1PA14|LINE|L1 62666 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 465-144 chr2 183680407 183680863 + 2 NA Intergenic L1MEg|LINE|L1 556192 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 709-40 chr2 66127184 66127762 + 2 NA Intergenic Intergenic 230855 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 412-347 chr9 90623697 90623964 + 2 NA intron (NM_017594, intron 1 of 1) FLAM_A|SINE|Alu 18994 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 141-84 chr8 115880763 115880847 + 2 NA Intergenic Intergenic -211830 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 861-38 chr8 141989864 141990528 + 2 NA Intergenic AluJr4|SINE|Alu -186143 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 301-361 chr5 99785550 99785714 + 2 NA Intergenic Intergenic 251642 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 351-313 chr3 137278150 137278474 + 2 NA Intergenic Intergenic 320329 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 314-434 chr4 99679478 99679683 + 2 NA Intergenic Intergenic -24901 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 249-432 chr8 130548871 130549107 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -105315 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 571-71 chr2 3854641 3855042 + 2 NA Intergenic AluSx|SINE|Alu 119191 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 249-81 chr11 114531814 114531973 + 2 NA intron (NM_152315, intron 2 of 5) MER5B|DNA|hAT-Charlie 27988 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 980-20 chr8 138352889 138353569 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 144032 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 243-401 chr6 146184618 146184824 + 2 NA intron (NM_001278065, intron 3 of 9) MLT1I|LTR|ERVL-MaLR 155523 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 216-12 chr1 92162885 92163056 + 2 NA Intergenic L1ME4b|LINE|L1 -5954 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 261-153 chr18 1802004 1802225 + 2 NA Intergenic Intergenic -442485 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 363-310 chr4 85049 85372 + 2 NA intron (NM_001286054, intron 4 of 4) intron (NM_001286054, intron 4 of 4) 31889 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 391-310 chr6 75691663 75691891 + 2 NA intron (NM_001100409, intron 15 of 22) AluY|SINE|Alu -57462 NM_001368865 4646 Hs.149387 NM_004999 ENSG00000196586 MYO6 DFNA22|DFNB37 myosin VI protein-coding 339-127 chr12 59613000 59613191 + 2 NA intron (NM_001270623, intron 1 of 5) THE1C|LTR|ERVL-MaLR 17066 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 332-433 chr5 144490762 144491024 + 2 NA Intergenic L1PB3|LINE|L1 285502 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 533-104 chr2 114087049 114087459 + 2 NA Intergenic MIRb|SINE|MIR -107270 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 541-71 chr15 54894534 54894920 + 2 NA Intergenic L1M1|LINE|L1 -162020 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 411-13 chr1 189960115 189960383 + 2 NA Intergenic Intergenic 515761 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 323-411 chr5 45459468 45459641 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 236826 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 334-133 chr13 96841124 96841309 + 2 NA Intergenic Intergenic 142956 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 276-346 chr4 86129118 86129368 + 2 NA intron (NR_110879, intron 3 of 3) MIR3|SINE|MIR 9437 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 464-100 chr18 57308944 57309354 + 2 NA Intergenic L2a|LINE|L2 -43408 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 250-229 chr2 188621874 188621999 + 2 NA Intergenic LTR16|LTR|ERVL 168187 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 368-365 chr5 89387427 89387649 + 2 NA intron (NR_136221, intron 5 of 6) L1ME3E|LINE|L1 -483433 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 350-306 chr3 41762224 41762488 + 2 NA intron (NR_136342, intron 20 of 34) L1MA3|LINE|L1 199747 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 189-126 chr3 85869013 85869142 + 2 NA intron (NM_001256502, intron 3 of 10) intron (NM_001256502, intron 3 of 10) -41027 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 376-91 chr13 22364540 22364760 + 2 NA Intergenic L1PA13|LINE|L1 154365 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 276-223 chr2 57249985 57250184 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -657567 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 258-401 chr8 104726413 104726571 + 2 NA Intergenic LTR85a|LTR|Gypsy? -137468 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 226-11 chr1 75159065 75159285 + 2 NA intron (NM_001001933, intron 9 of 9) L1ME3A|LINE|L1 24787 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 210-224 chr5 40202071 40202219 + 2 NA Intergenic Intergenic 149854 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 484-236 chr6 53002553 53003000 + 2 NA 3' UTR (NM_016513, exon 15 of 15) 3' UTR (NM_016513, exon 15 of 15) 7156 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 316-119 chr12 3125668 3125972 + 2 NA intron (NM_006675, intron 2 of 8) intron (NM_006675, intron 2 of 8) 48441 NM_006675 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 446-213 chr4 33544188 33544431 + 2 NA Intergenic Intergenic 495584 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 178-101 chr4 87621428 87621566 + 2 NA Intergenic Intergenic 12968 NM_014208 1834 Hs.678914 NM_014208 ENSG00000152591 DSPP DFNA39|DGI1|DMP3|DPP|DSP dentin sialophosphoprotein protein-coding 312-475 chr7 22651516 22651764 + 2 NA intron (NR_122075, intron 4 of 4) intron (NR_122075, intron 4 of 4) 13893 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 211-166 chr20 40500862 40501017 + 2 NA Intergenic L2c|LINE|L2 188297 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 124-24 chr13 69922760 69922849 + 2 NA intron (NM_001286725, intron 3 of 9) L1ME3F|LINE|L1 -184409 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 331-453 chr6 55206400 55206610 + 2 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 100045 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 303-228 chr2 154936548 154936712 + 2 NA Intergenic Intergenic 237935 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 342-243 chr2 102914498 102914772 + 2 NA Intergenic MLT2A1|LTR|ERVL -18913 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 360 chr1 10395161 10395419 + 2 NA Intergenic AluSz6|SINE|Alu -3774 NM_001304451 5226 Hs.464071 NM_002631 ENSG00000142657 PGD 6PGD phosphogluconate dehydrogenase protein-coding 295-431 chr7 27088661 27088858 + 2 NA Intergenic Intergenic 7241 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 309-177 chr15 64871412 64871592 + 2 NA Intergenic AluY|SINE|Alu 29587 NM_025201 80301 Hs.709337 NM_025201 ENSG00000241839 PLEKHO2 PLEKHQ1|PP1628|pp9099 pleckstrin homology domain containing O2 protein-coding 556-243 chrX 46494628 46495085 + 2 NA Intergenic HERV16-int|LTR|ERVL 47559 NM_001129898 55634 Hs.632800 NM_017776 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 291-496 chr9 91629568 91629831 + 2 NA Intergenic L1MB8|LINE|L1 -6552 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 179-99 chr5 152919871 152920042 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 52393 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 360-358 chr5 40986616 40986825 + 2 NA Intergenic MIR3|SINE|MIR 77223 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 381-87 chr12 59927609 59927818 + 2 NA Intergenic L1MA3|LINE|L1 238343 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 285-229 chr2 195571367 195571571 + 2 NA Intergenic L1ME4b|LINE|L1 -85489 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 465-227 chr5 51792903 51793208 + 2 NA Intergenic L1PA16|LINE|L1 -214976 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 332-538 chr8 106255460 106255722 + 2 NA Intergenic L1PB1|LINE|L1 -14587 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 487-83 chr14 50147551 50147904 + 2 NA intron (NM_006939, intron 14 of 22) intron (NM_006939, intron 14 of 22) -31155 NM_024558 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 273-191 chr18 69655938 69656147 + 2 NA intron (NM_152721, intron 3 of 7) L1MEd|LINE|L1 186111 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 247-179 chr19 52102600 52102839 + 2 NA Intergenic AluSx|SINE|Alu -6954 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 167-44 chr17 66366153 66366265 + 2 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 50645 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 393-190 chr2 227291666 227292053 + 2 NA intron (NM_000091, intron 37 of 51) intron (NM_000091, intron 37 of 51) 33305 NR_102371 654841 Hs.659982 NR_102371 ENSG00000236432 LOC654841 - uncharacterized LOC654841 ncRNA 360-149 chr15 101804141 101804465 + 2 NA Intergenic Intergenic -1417 NM_001005326 390648 Hs.553399 NM_001005326 ENSG00000184140 OR4F6 OR15-15|OR4F12 olfactory receptor family 4 subfamily F member 6 protein-coding 395-258 chr4 135770357 135770603 + 2 NA Intergenic Intergenic 117613 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 360-330 chr4 65925236 65925537 + 2 NA Intergenic Intergenic -254891 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 225-115 chr16 73452305 73452434 + 2 NA Intergenic Intergenic 65564 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 368-445 chr8 50033798 50034009 + 2 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 122496 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 594-19 chr10 97448792 97449205 + 2 NA intron (NR_109895, intron 1 of 8) CR1-3_Croc|LINE|CR1 2823 NM_198046 84287 Hs.76662 NM_032327 ENSG00000171307 ZDHHC16 APH2|DHHC-16 zinc finger DHHC-type containing 16 protein-coding 422-167 chr20 42293105 42293343 + 2 NA intron (NM_133170, intron 12 of 31) L2|LINE|L2 -392259 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 237-113 chr14 84198373 84198548 + 2 NA Intergenic Intergenic -1073472 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 155-93 chr7 8154408 8154549 + 2 NA intron (NM_001350838, intron 6 of 11) intron (NM_001350838, intron 6 of 11) 107574 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 566-152 chr5 26663733 26664196 + 2 NA Intergenic Intergenic 374622 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 283-437 chr8 77141417 77141677 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -140503 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 295-175 chr17 33736408 33736581 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -202734 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 302-398 chr7 4337358 4337625 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -202654 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 521-87 chr14_GL000225v1_random 97196 97548 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 189-3 chr1 110647455 110647615 + 2 NA Intergenic MER121|DNA|hAT? -16095 NM_001204269 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 330-85 chr11 23053432 23053607 + 2 NA Intergenic Intergenic -193045 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 252-155 chr17 55441550 55441748 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -19814 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 752-27 chr17 54293892 54294320 + 2 NA Intergenic Intergenic 471179 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 443-224 chr4 78963145 78963427 + 2 NA Intergenic Intergenic -8462 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 311-426 chr5 155465823 155466023 + 2 NA Intergenic L1MEc|LINE|L1 452168 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 335-299 chr20 42843993 42844239 + 2 NA intron (NM_133170, intron 2 of 31) MIRb|SINE|MIR -124627 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 309-168 chr15 26172599 26172831 + 2 NA Intergenic Intergenic 56902 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 339-71 chr10 96441360 96441630 + 2 NA intron (NM_012465, intron 3 of 20) MER5B|DNA|hAT-Charlie 72431 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 655-110 chr7 36053099 36053680 + 2 NA Intergenic L1ME3B|LINE|L1 -41921 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 598-40 chr13 56018594 56018915 + 2 NA Intergenic L1M3e|LINE|L1 844300 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 179-9 chr11 2602813 2602956 + 2 NA intron (NM_181798, intron 10 of 15) L1MD1|LINE|L1 97114 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 598-113 chr5 126398656 126399100 + 2 NA intron (NM_001146319, intron 1 of 13) L1M3c|LINE|L1 -24268 NM_001146320 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 564-97 chr2 50425749 50426116 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -78176 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 397-107 chr15 94012309 94012570 + 2 NA intron (NR_120320, intron 2 of 8) L1ME4a|LINE|L1 95499 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 326-550 chr8 120565485 120565665 + 2 NA intron (NM_021021, intron 4 of 6) intron (NM_021021, intron 4 of 6) 120156 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 501-251 chr8 4428745 4429089 + 2 NA intron (NM_033225, intron 2 of 69) AluSz|SINE|Alu 565997 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 266-348 chr5 144441979 144442163 + 2 NA intron (NM_001370487, intron 2 of 2) L1M4b|LINE|L1 236680 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 621-58 chr2 67264753 67265215 + 2 NA intron (NR_110564, intron 1 of 4) AluJr|SINE|Alu -49665 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 290-486 chr9 90254248 90254515 + 2 NA Intergenic Intergenic 179108 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 325-45 chr1 244400157 244400474 + 2 NA Intergenic L1M4c|LINE|L1 47680 NM_001276349 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 168-7 chr1 206000717 206000838 + 2 NA intron (NM_001164522, intron 1 of 5) intron (NM_001164522, intron 1 of 5) 2618 NM_001164522 338382 Hs.534612 NM_177403 ENSG00000276600 RAB7B RAB7 RAB7B, member RAS oncogene family protein-coding 431-286 chr8 33379268 33379544 + 2 NA intron (NM_032664, intron 4 of 4) L1MCc|LINE|L1 93740 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 442-138 chr2 102573291 102573645 + 2 NA Intergenic L1MA5|LINE|L1 -46085 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 327-396 chr5 51442343 51442550 + 2 NA Intergenic Intergenic 58998 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 277-107 chr14 27641647 27641814 + 2 NA intron (NR_148991, intron 2 of 2) AluJr|SINE|Alu -8452 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 355-498 chr8 74691768 74692031 + 2 NA intron (NR_033830, intron 2 of 5) intron (NR_033830, intron 2 of 5) -13794 NR_031744 100302260 NR_031744 ENSG00000283188 MIR2052 hsa-mir-2052 microRNA 2052 ncRNA 513-86 chr15 56559384 56559729 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -94419 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 312-313 chr22 33688973 33689164 + 2 NA intron (NM_133642, intron 2 of 14) Eulor9A|DNA|DNA 15852 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 443-312 chrX 64748630 64748959 + 2 NA Intergenic L1PB2|LINE|L1 227656 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 303-239 chr2 227437499 227437771 + 2 NA Intergenic L1ME1|LINE|L1 -34497 NR_049888 100847081 NR_049888 ENSG00000284092 MIR5703 mir-5703 microRNA 5703 ncRNA 342-419 chr5 114782613 114782840 + 2 NA Intergenic Intergenic -9313 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 276-11 chr1 74023407 74023652 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 174647 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 329-398 chr4 30953674 30953952 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -217331 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 259-260 chr3 131107071 131107323 + 2 NA intron (NM_001353034, intron 5 of 18) intron (NM_001353034, intron 5 of 18) 79469 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 180-99 chr21 23675790 23675934 + 2 NA Intergenic Intergenic -291027 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 366-308 chr4 57415826 57416105 + 2 NA Intergenic Intergenic -9907 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 292-328 chr4 160799134 160799409 + 2 NA Intergenic LTR16B1|LTR|ERVL -1021487 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 503-231 chr5 34879336 34879692 + 2 NA intron (NM_001317949, intron 8 of 10) intron (NM_001317949, intron 8 of 10) 35990 NR_026591 5810 Hs.38114 NM_002853 ENSG00000113456 RAD1 HRAD1|REC1 RAD1 checkpoint DNA exonuclease protein-coding 290-292 chr3 143603182 143603428 + 2 NA intron (NM_173653, intron 6 of 15) MLT1F|LTR|ERVL-MaLR 245163 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 371-314 chr5 78092129 78092437 + 2 NA intron (NM_003664, intron 21 of 26) intron (NM_003664, intron 21 of 26) 134036 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 160-77 chr4 68015713 68015834 + 2 NA Intergenic Intergenic -18334 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 585-58 chr17 61941427 61941907 + 2 NA TTS (NM_005121) TTS (NM_005121) -13685 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 284-461 chrX 108711990 108712153 + 2 NA Intergenic L1MB5|LINE|L1 24306 NM_003604 8471 Hs.407141 NM_003604 ENSG00000133124 IRS4 IRS-4|PY160 insulin receptor substrate 4 protein-coding 288-173 chr2 4012331 4012568 + 2 NA Intergenic Intergenic 38288 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 135-47 chr3 105373736 105373839 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 6878 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 427-206 chr5 42787185 42787518 + 2 NA intron (NM_001134848, intron 6 of 8) L1PA15-16|LINE|L1 24541 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 226-319 chr7 22652271 22652473 + 2 NA intron (NR_122075, intron 4 of 4) intron (NR_122075, intron 4 of 4) 13161 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 150-61 chr21 34944471 34944566 + 2 NA intron (NM_001754, intron 2 of 8) intron (NM_001754, intron 2 of 8) -55819 NM_001001890 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 337-236 chr2 21393225 21393434 + 2 NA Intergenic Intergenic 269343 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 382-146 chr17 54406826 54407029 + 2 NA Intergenic Intergenic -493764 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 317-305 chr3 82596107 82596369 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 610096 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 439-109 chr17 68646973 68647293 + 2 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 18979 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 496-193 chr4 58466509 58466880 + 2 NA Intergenic Intergenic 69634 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 561-70 chr14 85772737 85773125 + 2 NA Intergenic L1ME1|LINE|L1 -161747 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 295-106 chr12 125577980 125578264 + 2 NA intron (NM_052907, intron 4 of 8) L1MB8|LINE|L1 -44330 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 521-103 chr17 77720822 77721280 + 2 NA Intergenic MER117|DNA|hAT-Charlie 7508 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 174-139 chr7 52509304 52509431 + 2 NA Intergenic Intergenic -526266 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 455-272 chr8 78898985 78899379 + 2 NA Intergenic L2c|LINE|L2 61653 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 400-34 chr10 51198176 51198540 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -101215 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 534-269 chr8 132976707 132977115 + 2 NA intron (NM_003235, intron 34 of 47) intron (NM_003235, intron 34 of 47) 69670 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 252-330 chr5 45653003 45653186 + 2 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 43286 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 528-2 chr1 15402739 15403241 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -6898 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 384-263 chr4 64722013 64722238 + 2 NA Intergenic MER119|DNA|hAT-Charlie 282375 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 531-192 chr5 24959691 24960105 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -119315 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 221-224 chr4 94416654 94416816 + 2 NA Intergenic L1P4|LINE|L1 -35122 NR_046186 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 325-411 chr4 138200505 138200791 + 2 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 41701 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 310-150 chr14 104231154 104231349 + 2 NA intron (NR_146612, intron 1 of 2) intron (NR_146612, intron 1 of 2) 7667 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 258-108 chr13 85073194 85073387 + 2 NA intron (NR_126383, intron 4 of 5) MER4A1|LTR|ERV1 74767 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 364-336 chr5 30047949 30048218 + 2 NA Intergenic (ATATAG)n|Simple_repeat|Simple_repeat 167523 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 184-153 chr7 13740708 13740831 + 2 NA Intergenic Intergenic 245745 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 232-25 chr10 39275267 39275480 + 2 NA Intergenic ALR/Alpha|Satellite|centr 578777 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 164-43 chr16 53789001 53789132 + 2 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 84910 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 420-277 chr8 5901815 5902123 + 2 NA Intergenic L1MEd|LINE|L1 504579 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 201-233 chr8 26029027 26029204 + 2 NA intron (NM_022659, intron 6 of 15) intron (NM_022659, intron 6 of 15) 16298 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 290-289 chr3 106503620 106503802 + 2 NA Intergenic L1MEf|LINE|L1 -634310 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 237-343 chr7 11375406 11375576 + 2 NA 3' UTR (NM_015204, exon 27 of 27) 3' UTR (NM_015204, exon 27 of 27) 401619 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 380-11 chr1 58746750 58747033 + 2 NA Intergenic LTR33|LTR|ERVL 37156 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 278-153 chr16 86638135 86638299 + 2 NA Intergenic L2b|LINE|L2 59708 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 217-309 chr5 140742950 140743108 + 2 NA Intergenic Intergenic 16870 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 348-445 chr6 41669078 41669257 + 2 NA Intergenic L1ME1|LINE|L1 30699 NM_001300805 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 258-87 chr12 42772003 42772194 + 2 NA Intergenic AluJb|SINE|Alu 79882 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 411-181 chr3 72361875 72362109 + 2 NA Intergenic HAL1|LINE|L1 84631 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 260-353 chr5 110309062 110309243 + 2 NA Intergenic L1MA4|LINE|L1 204763 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 319-78 chr10 108039148 108039330 + 2 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 30054 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 350-102 chr12 73730642 73730888 + 2 NA Intergenic MER33|DNA|hAT-Charlie 561866 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 191-225 chr9 103906472 103906627 + 2 NA Intergenic LTR85c|LTR|Gypsy? -93160 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 211-64 chr12 61852103 61852292 + 2 NA intron (NM_178539, intron 2 of 4) AluSp|SINE|Alu 340642 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 587-141 chr6 6538848 6539306 + 2 NA intron (NR_026970, intron 3 of 7) L2|LINE|L2 -49643 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 231-163 chr2 56949567 56949742 + 2 NA Intergenic L1PREC2|LINE|L1 -763884 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 559-178 chr8 11110280 11110714 + 2 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) -43408 NR_134308 101929269 Hs.680442 NR_134308 ENSG00000254839 LOC101929269 - uncharacterized LOC101929269 ncRNA 316-507 chr7 19043015 19043201 + 2 NA Intergenic L1PA16|LINE|L1 74528 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 296-460 chr8 70964028 70964219 + 2 NA Intergenic L1PA11|LINE|L1 294784 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 316-383 chr4 19337502 19337696 + 2 NA Intergenic Intergenic -914306 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 119-2 chr1 110914311 110914423 + 2 NA Intergenic L1ME3B|LINE|L1 41219 NM_000560 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 452-109 chr18 14082541 14082887 + 2 NA intron (NR_033354, intron 3 of 5) AluJr|SINE|Alu 49721 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 351-319 chr3 169316645 169316860 + 2 NA intron (NM_001205194, intron 1 of 15) AluJb|SINE|Alu -131115 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 425-42 chr10 95205947 95206286 + 2 NA intron (NM_207321, intron 3 of 10) L1MB7|LINE|L1 11916 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 158-88 chr4 157465645 157465765 + 2 NA Intergenic HAL1|LINE|L1 -106785 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 300-111 chr14 48141297 48141591 + 2 NA Intergenic Intergenic -346430 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 181-81 chr20 52785416 52785542 + 2 NA Intergenic Intergenic 164641 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 590-55 chr14 83216597 83217080 + 2 NA Intergenic L1M1|LINE|L1 574206 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 648-61 chr18 47727374 47727793 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 203076 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 171-107 chr5 124274037 124274202 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 164401 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 243-271 chr22 49226991 49227180 + 2 NA Intergenic L1MB7|LINE|L1 316381 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 588-26 chr12 29846486 29847019 + 2 NA Intergenic Intergenic -61993 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 340-81 chr11 86707559 86707817 + 2 NA Intergenic L1MEc|LINE|L1 -35052 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 258-84 chr12 30345681 30345867 + 2 NA Intergenic L2a|LINE|L2 331470 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 666-102 chr6 49363681 49364229 + 2 NA Intergenic Intergenic 99298 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 547-199 chr6 39652657 39653053 + 2 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 72553 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 369-236 chr2 239582190 239582524 + 2 NA Intergenic Intergenic -180503 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 516-42 chr12 1177126 1177483 + 2 NA intron (NR_027948, intron 7 of 19) Tigger1|DNA|TcMar-Tigger 149556 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 313-62 chr10 111508547 111508813 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 394389 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 957-30 chr8 89073596 89074326 + 2 NA Intergenic L1MC1|LINE|L1 683750 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 653-103 chr5 127627514 127628079 + 2 NA Intergenic Intergenic -21225 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 283-428 chr8 14651010 14651228 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 202391 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 176-112 chr5 122554864 122554993 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 29672 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 526-183 chr4 80768887 80769224 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -261653 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 338-22 chr1 106929276 106929495 + 2 NA Intergenic L2a|LINE|L2 111146 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 440-197 chr5 61915226 61915593 + 2 NA Intergenic MER61-int|LTR|ERV1 -179711 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 211-81 chr14 20829637 20829794 + 2 NA Intergenic Intergenic -26871 NM_198234 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 402-178 chr2 189194016 189194385 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -14439 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 273-370 chr5 145837618 145837800 + 2 NA Intergenic L2|LINE|L2 -2367 NM_182960 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 138-37 chr2 21658702 21658797 + 2 NA Intergenic Intergenic 51903 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 274-90 chr12 26529936 26530201 + 2 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 303126 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 416-256 chr4 115491775 115492096 + 2 NA Intergenic L1PBa|LINE|L1 -378315 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 645-101 chr5 128036839 128037332 + 2 NA intron (NR_152812, intron 4 of 4) intron (NR_152812, intron 4 of 4) 46090 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 144-46 chr2 58028155 58028282 + 2 NA intron (NM_001288837, intron 3 of 15) intron (NM_001288837, intron 3 of 15) -18424 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 335-137 chr13 37059002 37059232 + 2 NA intron (NM_001014286, intron 1 of 25) intron (NM_001014286, intron 1 of 25) 370 NM_001278482 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 339-124 chr12 25738488 25738767 + 2 NA Intergenic Intergenic -90049 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 252-344 chr5 106545789 106545941 + 2 NA Intergenic Intergenic 465149 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 291-273 chr22 35316564 35316827 + 2 NA intron (NR_156428, intron 1 of 13) L1MB5|LINE|L1 16801 NM_005488 10043 Hs.474705 NM_005488 ENSG00000100284 TOM1 - target of myb1 membrane trafficking protein protein-coding 469-245 chr6 73894640 73894935 + 2 NA Intergenic L1MA6|LINE|L1 -174664 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 265-102 chr14 48208613 48208807 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -413696 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 236-364 chr8 120709439 120709663 + 2 NA intron (NM_021021, intron 1 of 6) MIRb|SINE|MIR -51702 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 312-464 chr6 156033241 156033407 + 2 NA Intergenic L1MEf|LINE|L1 86527 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 194-167 chr5 68254074 68254209 + 2 NA intron (NM_181523, intron 2 of 15) intron (NM_181523, intron 2 of 15) -34378 NM_181524 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 319-285 chr20 13372531 13372828 + 2 NA Intergenic L1M4b|LINE|L1 -132992 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 533-189 chr5 141019676 141020085 + 2 NA Intergenic Intergenic -31496 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 403-100 chr14 66963454 66963674 + 2 NA intron (NM_020806, intron 8 of 22) intron (NM_020806, intron 8 of 22) -225876 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 130-88 chr9 71549371 71549451 + 2 NA Intergenic L1M6|LINE|L1 -102440 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 258-425 chr9 75664020 75664228 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -226520 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 266-452 chr9 93834931 93835169 + 2 NA Intergenic L1ME2|LINE|L1 15693 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 218 chr1 5256662 5256820 + 2 NA Intergenic L1M5|LINE|L1 602132 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 313-104 chr12 16018342 16018538 + 2 NA intron (NM_015954, intron 6 of 8) intron (NM_015954, intron 6 of 8) 107108 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 234-272 chr4 56893822 56894008 + 2 NA Intergenic AluJb|SINE|Alu -13985 NM_005612 5978 Hs.307836 NM_005612 ENSG00000084093 REST DFNA27|GINGF5|HGF5|NRSF|WT6|XBR RE1 silencing transcription factor protein-coding 197-70 chr16 51281135 51281300 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -129945 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 309-79 chr11 38742843 38743066 + 2 NA Intergenic Intergenic 94096 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 472-295 chr7 30587710 30588083 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -6839 NM_001316772 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 382-24 chr1 225002344 225002560 + 2 NA intron (NM_001349911, intron 8 of 10) intron (NM_001349911, intron 8 of 10) 72777 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 269-75 chr11 108754545 108754805 + 2 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 89606 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 357-450 chr8 112320038 112320282 + 2 NA intron (NM_001363185, intron 41 of 66) intron (NM_001363185, intron 41 of 66) -323333 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 307-100 chr12 23869134 23869393 + 2 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 80407 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 327-32 chr1 238407921 238408233 + 2 NA Intergenic Intergenic 77940 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 517-263 chr8 82751301 82751656 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -160626 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 330-109 chr12 10006219 10006539 + 2 NA Intergenic L2a|LINE|L2 -4248 NR_135049 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 244-387 chr9 91971315 91971462 + 2 NA Intergenic Intergenic -21160 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 343-225 chr2 23074976 23075245 + 2 NA Intergenic Intergenic -310069 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 465-233 chr5 99850804 99851150 + 2 NA Intergenic L1MA10|LINE|L1 316987 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 235-146 chr18 43063135 43063313 + 2 NA intron (NM_001272077, intron 1 of 5) intron (NM_001272077, intron 1 of 5) 52461 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 333-96 chr11 88607238 88607436 + 2 NA intron (NM_001143831, intron 3 of 8) L2a|LINE|L2 102761 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 454-311 chr8 83949756 83950058 + 2 NA Intergenic Intergenic -232880 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 662-85 chr6 74510338 74510922 + 2 NA intron (NR_110856, intron 2 of 3) L1MA6|LINE|L1 441179 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 264-250 chr21 20302481 20302721 + 2 NA Intergenic Intergenic -43916 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 369-391 chr7 104624242 104624466 + 2 NA intron (NM_199000, intron 1 of 2) MIR3|SINE|MIR 179738 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 263-251 chr3 15946483 15946684 + 2 NA Intergenic L1MA8|LINE|L1 72812 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 403-167 chr2 162586438 162586702 + 2 NA intron (NM_033272, intron 2 of 15) MLT1H|LTR|ERVL-MaLR -182366 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 423-262 chr7 9758596 9758930 + 2 NA Intergenic LTR49|LTR|ERV1 124493 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 327-301 chr20 54479906 54480084 + 2 NA intron (NM_018431, intron 1 of 7) L2a|LINE|L2 4402 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 321-410 chr4 38788396 38788563 + 2 NA Intergenic Intergenic -5489 NM_001195107 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 318-216 chr18 22071099 22071394 + 2 NA Intergenic Intergenic 97722 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 260-361 chr5 150087407 150087611 + 2 NA promoter-TSS (NR_109969) promoter-TSS (NR_109969) -806 NM_001288705 1436 Hs.586219 NM_005211 ENSG00000182578 CSF1R C-FMS|CD115|CSF-1R|CSFR|FIM2|FMS|HDLS|M-CSF-R colony stimulating factor 1 receptor protein-coding 343-564 chr8 135460654 135460973 + 2 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 3357 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 332-513 chr8 40288920 40289127 + 2 NA Intergenic L1M4|LINE|L1 54340 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 258-289 chr4 59232203 59232395 + 2 NA Intergenic L1PA13|LINE|L1 218726 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 192-123 chr20 56294305 56294468 + 2 NA Intergenic MIRc|SINE|MIR 45654 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 234-361 chr7 40157281 40157466 + 2 NA intron (NM_024728, intron 1 of 14) LTR40A1|LTR|ERVL 22397 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 477-235 chr5 46324288 46324670 + 2 NA Intergenic ALR/Alpha|Satellite|centr -628099 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 209-27 chr1 241378538 241378688 + 2 NA Intergenic Intergenic -21383 NM_002924 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 320-443 chr5 54590979 54591227 + 2 NA Intergenic Intergenic 73344 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 252-219 chr2 160638744 160638933 + 2 NA Intergenic Intergenic -145031 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 322-380 chr4 83817988 83818233 + 2 NA Intergenic MIRb|SINE|MIR 282002 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 453-79 chr15 86218092 86218394 + 2 NA intron (NM_152336, intron 5 of 24) intron (NM_152336, intron 5 of 24) 98725 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 416-208 chr21 31019132 31019449 + 2 NA Intergenic Intergenic 19186 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 515-202 chr5 45954524 45954932 + 2 NA Intergenic ALR/Alpha|Satellite|centr -258348 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 959-12 chr14 89104999 89105805 + 2 NA Intergenic Intergenic 280751 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 299-250 chr20 14183279 14183516 + 2 NA intron (NM_001351663, intron 3 of 17) L1PA12|LINE|L1 154215 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 267-311 chr5 8353147 8353370 + 2 NA intron (NR_039984, intron 3 of 5) L1MEc|LINE|L1 104306 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 363-289 chr3 95310229 95310577 + 2 NA Intergenic Intergenic 372140 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 399-233 chr4 106114523 106114857 + 2 NA intron (NM_001290768, intron 25 of 26) intron (NM_001290768, intron 25 of 26) -92212 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 356-432 chr6 126005733 126006054 + 2 NA intron (NM_001031712, intron 7 of 12) intron (NM_001031712, intron 7 of 12) 19353 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 143-24 chr13 56075851 56075961 + 2 NA Intergenic Intergenic 901452 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 641-82 chr4 41792811 41793445 + 2 NA Intergenic Intergenic -44158 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 266-423 chr8 102697199 102697434 + 2 NA Intergenic Intergenic 41068 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 305-322 chr21 30019181 30019451 + 2 NA Intergenic L1MB8|LINE|L1 -79264 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 180-58 chr16 52464847 52464979 + 2 NA intron (NM_001080430, intron 2 of 6) intron (NM_001080430, intron 2 of 6) 82230 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 244-301 chr5 55012678 55012848 + 2 NA Intergenic L1PA13|LINE|L1 11406 NR_104662 102467081 NR_104662 LOC102467081 - uncharacterized LOC102467081 ncRNA 272-177 chr2 31308362 31308553 + 2 NA Intergenic L1PBa|LINE|L1 74305 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 396-117 chr15 71512842 71513189 + 2 NA intron (NM_024817, intron 6 of 16) intron (NM_024817, intron 6 of 16) -34221 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 193-67 chr15 76636942 76637065 + 2 NA intron (NR_148227, intron 21 of 32) L1MB8|LINE|L1 50356 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 197-179 chr5 154978635 154978800 + 2 NA Intergenic Intergenic -35038 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 292-363 chr5 147831780 147832062 + 2 NA intron (NM_001354966, intron 1 of 4) MIR3|SINE|MIR 7310 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 314-543 chr7 87297244 87297448 + 2 NA Intergenic L1PA15|LINE|L1 48146 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 298-216 chr2 70344716 70344981 + 2 NA Intergenic LTR85a|LTR|Gypsy? -42781 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 239-117 chr15 37460044 37460274 + 2 NA Intergenic Intergenic -358848 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 243-424 chr7 78368718 78368876 + 2 NA intron (NM_001301128, intron 7 of 20) intron (NM_001301128, intron 7 of 20) 21555 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 339-311 chr20 18855086 18855415 + 2 NA Intergenic Intergenic -25047 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 490-43 chr10 78193737 78194097 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -54708 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 162-88 chr3 119700330 119700462 + 2 NA Intergenic MER31A|LTR|ERV1 -2626 NM_001320318 89876 Hs.341906 NM_033364 ENSG00000183833 MAATS1 AAT1|AAT1alpha|C3orf15|CFAP91|CaM-IP2|SPATA26 MYCBP associated and testis expressed 1 protein-coding 229-23 chr1 228041071 228041257 + 2 NA intron (NM_033131, intron 2 of 3) intron (NM_033131, intron 2 of 3) 34166 NM_033131 89780 Hs.336930 NM_033131 ENSG00000154342 WNT3A - Wnt family member 3A protein-coding 424-33 chr10 112030971 112031329 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 152615 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 273-286 chr3 26501528 26501792 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -121146 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 584-44 chr14 65390423 65390847 + 2 NA Intergenic Intergenic -19957 NR_038167 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 320-535 chr8 52874941 52875252 + 2 NA Intergenic Intergenic -64812 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 339-555 chr8 21690509 21690741 + 2 NA 3' UTR (NM_001165038, exon 8 of 8) 3' UTR (NM_001165038, exon 8 of 8) 98250 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 229-140 chr16 82737041 82737212 + 2 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -36193 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 500-226 chr5 56002553 56003029 + 2 NA non-coding (NR_102755, exon 2 of 2) non-coding (NR_102755, exon 2 of 2) 7624 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 390-41 chr10 73309111 73309336 + 2 NA intron (NM_001367801, intron 13 of 27) L1M4|LINE|L1 49531 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 519-109 chr2 104535823 104536243 + 2 NA Intergenic L1MEd|LINE|L1 -25524 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 332-67 chr10 76277115 76277305 + 2 NA intron (NM_001305581, intron 5 of 6) L1MEf|LINE|L1 494449 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 326-431 chr5 145040627 145040931 + 2 NA Intergenic Intergenic 794563 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 159-17 chr11 90293673 90293826 + 2 NA intron (NR_104190, intron 1 of 6) HSMAR2|DNA|TcMar-Mariner 42517 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 278-129 chr15 39343236 39343479 + 2 NA Intergenic L1M5|LINE|L1 92688 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 481-244 chr5 31261935 31262299 + 2 NA intron (NM_001362435, intron 1 of 10) MamRep434|DNA|TcMar-Tigger 68431 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 402-113 chr17 65777162 65777468 + 2 NA intron (NM_001353129, intron 21 of 26) MLT1J|LTR|ERVL-MaLR 49136 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 330-514 chr8 76088053 76088223 + 2 NA Intergenic L1PB1|LINE|L1 -318516 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 302-125 chr14 51732448 51732728 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 15305 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 332-516 chr8 47031938 47032134 + 2 NA Intergenic L1PBa|LINE|L1 -157271 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 301-126 chr14 81960704 81960983 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -217705 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 152-24 chr13 50711454 50711575 + 2 NA 3' UTR (NM_198989, exon 2 of 2) 3' UTR (NM_198989, exon 2 of 2) -96341 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 285-144 chr16 51770901 51771101 + 2 NA intron (NR_110916, intron 1 of 2) intron (NR_110916, intron 1 of 2) 8482 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 169-127 chr7 104603270 104603372 + 2 NA intron (NM_199000, intron 1 of 2) AluJr|SINE|Alu 200771 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 328-138 chr14 32277623 32277878 + 2 NA Intergenic L2a|LINE|L2 -51548 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 518-250 chr6 406973 407342 + 2 NA intron (NR_046000, intron 9 of 9) intron (NR_046000, intron 9 of 9) 15405 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 683-10 chr10 90273223 90273760 + 2 NA Intergenic MER5C|DNA|hAT-Charlie 267314 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 474-145 chr2 109175568 109176019 + 2 NA intron (NM_001099289, intron 1 of 9) intron (NM_001099289, intron 1 of 9) -34205 NR_036223 100422863 NR_036223 ENSG00000264934 MIR4265 - microRNA 4265 ncRNA 207-283 chr8 16598313 16598482 + 2 NA Intergenic Intergenic 403948 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 237-332 chr6 121263098 121263252 + 2 NA intron (NR_104452, intron 15 of 35) L1PA8|LINE|L1 71305 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 427-152 chr3 3807344 3807590 + 2 NA intron (NM_001324188, intron 2 of 2) intron (NM_001324188, intron 2 of 2) -6592 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 375-401 chr8 43659277 43659556 + 2 NA Intergenic ALR/Alpha|Satellite|centr 366974 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 320-140 chr14 20151251 20151473 + 2 NA Intergenic Intergenic 7626 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 417-148 chr2 111219031 111219338 + 2 NA intron (NR_015395, intron 5 of 6) intron (NR_015395, intron 5 of 6) 98270 NM_001204107 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 466-182 chr4 27233413 27233729 + 2 NA intron (NR_125921, intron 3 of 5) intron (NR_125921, intron 3 of 5) 16092 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 360-273 chr21 10710216 10710547 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 188867 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 268-81 chr12 27568849 27569061 + 2 NA intron (NM_003622, intron 1 of 29) intron (NM_003622, intron 1 of 29) 44749 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 345-409 chr5 19151137 19151455 + 2 NA Intergenic L1M4|LINE|L1 734976 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 437-104 chr17 63254215 63254541 + 2 NA intron (NM_025185, intron 7 of 25) L1MA4A|LINE|L1 185889 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 429-234 chr5 62955512 62955754 + 2 NA Intergenic L1MB2|LINE|L1 376814 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 286-398 chr6 145177441 145177636 + 2 NA Intergenic L1MA2|LINE|L1 509339 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 258-120 chr14 47511290 47511496 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 163561 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 363-340 chr4 110640099 110640302 + 2 NA intron (NM_001204397, intron 1 of 6) intron (NM_001204397, intron 1 of 6) 1923 NM_001204399 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 266-172 chr2 33843573 33843758 + 2 NA intron (NR_126403, intron 1 of 5) L2a|LINE|L2 -115448 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 198-98 chr18 11575979 11576121 + 2 NA Intergenic L1ME3G|LINE|L1 -33508 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 354-236 chr2 168445863 168446172 + 2 NA Intergenic L3|LINE|CR1 -10255 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 310-520 chr8 88277458 88277680 + 2 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 49914 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 288-82 chr12 33159194 33159456 + 2 NA Intergenic Intergenic -262479 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 360-195 chr19 40630551 40630905 + 2 NA TTS (NM_001042545) TTS (NM_001042545) 29359 NM_001042545 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 293-11 chr1 113098411 113098616 + 2 NA intron (NM_014813, intron 8 of 17) intron (NM_014813, intron 8 of 17) 25315 NM_014813 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 336-552 chr8 115562555 115562816 + 2 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 105328 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 434-183 chr3 73513919 73514202 + 2 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -7262 NR_121660 101927296 Hs.662049 NR_121660 LOC101927296 - uncharacterized LOC101927296 ncRNA 235-68 chr11 100263430 100263593 + 2 NA intron (NM_001243270, intron 16 of 23) (TATA)n|Simple_repeat|Simple_repeat -423777 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 541-215 chr7 41827896 41828395 + 2 NA Intergenic LTR16|LTR|ERVL -125055 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 244-181 chr2 188398866 188399029 + 2 NA intron (NM_016315, intron 2 of 11) intron (NM_016315, intron 2 of 11) 101455 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 226-367 chr8 136736290 136736448 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 205571 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 448-276 chr8 65907558 65907849 + 2 NA Intergenic L1MDa|LINE|L1 -65639 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 251-372 chr7 54526911 54527056 + 2 NA Intergenic L1MC3|LINE|L1 -15342 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 408-356 chr9 94043215 94043481 + 2 NA intron (NM_177995, intron 1 of 9) L1MC3|LINE|L1 12535 NM_177995 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 328-389 chr4 30647579 30647836 + 2 NA Intergenic L1MA9|LINE|L1 -72662 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 241-312 chr5 125179449 125179644 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 142715 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 309-396 chr4 67164797 67164965 + 2 NA Intergenic Intergenic 257119 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 530-41 chr11 57625996 57626261 + 2 NA Intergenic MER51B|LTR|ERV1 -15070 NR_029673 406919 NR_029673 ENSG00000208009 MIR130A MIRN130A|miRNA130A|mir-130a microRNA 130a ncRNA 288-164 chr18 76672980 76673182 + 2 NA Intergenic Intergenic -16948 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 234-354 chr7 14777059 14777236 + 2 NA intron (NM_001350717, intron 2 of 24) THE1C-int|LTR|ERVL-MaLR 64303 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 306-450 chr6 161222735 161222989 + 2 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) 51199 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 195-147 chr3 78443181 78443359 + 2 NA Intergenic L1M2|LINE|L1 -394307 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 356-53 chr10 63469792 63469990 + 2 NA intron (NM_001322258, intron 1 of 24) intron (NM_001322258, intron 1 of 24) -3914 NM_032776 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 447-299 chrX 35463343 35463716 + 2 NA Intergenic Intergenic -334813 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 228-259 chr5 5604629 5604814 + 2 NA Intergenic Intergenic 182044 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 191-9 chr1 101163371 101163521 + 2 NA Intergenic Intergenic 73082 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 371-90 chr12 131532343 131532579 + 2 NA Intergenic LTR82A|LTR|ERVL 115660 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 161-122 chr8 81450396 81450522 + 2 NA Intergenic L1MA2|LINE|L1 -3020 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 314-96 chr11 41918924 41919099 + 2 NA Intergenic L1MCa|LINE|L1 166447 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 391-250 chr4 30517867 30518183 + 2 NA Intergenic Intergenic -202344 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 213-102 chr15 97059512 97059668 + 2 NA Intergenic Intergenic 276155 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 314-169 chr14 52327231 52327475 + 2 NA exon (NM_000956, exon 2 of 2) exon (NM_000956, exon 2 of 2) 13041 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 260-43 chr10 36695394 36695551 + 2 NA Intergenic L1MD1|LINE|L1 -430385 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 146-75 chr6 12246024 12246099 + 2 NA Intergenic Intergenic -44300 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 306-546 chr9 75546637 75546803 + 2 NA Intergenic Intergenic -343924 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 523-209 chr4 170364856 170365271 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 138472 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 208-199 chr5 4303778 4303934 + 2 NA Intergenic Intergenic -469625 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 365-378 chr7 68143635 68143992 + 2 NA Intergenic LTR8B|LTR|ERV1 123560 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 295-433 chr7 34407287 34407467 + 2 NA intron (NR_033665, intron 3 of 3) intron (NR_033665, intron 3 of 3) -250841 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 416-352 chr9 71634414 71634664 + 2 NA Intergenic Intergenic 133974 NM_001349784 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 134-82 chr7 36670735 36670815 + 2 NA intron (NM_001177507, intron 2 of 19) intron (NM_001177507, intron 2 of 19) 53719 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 204-207 chr3 156917719 156917896 + 2 NA intron (NM_001004316, intron 3 of 12) HAL1|LINE|L1 91454 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 451-67 chr14 60109580 60109945 + 2 NA intron (NM_001330177, intron 2 of 10) MLT1A-int|LTR|ERVL-MaLR 17839 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 267-92 chr12 115726082 115726294 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 422466 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 298-237 chr2 161478270 161478522 + 2 NA Intergenic HAL1b|LINE|L1 29506 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 294-56 chr11 31622358 31622520 + 2 NA intron (NM_001288725, intron 5 of 10) intron (NM_001288725, intron 5 of 10) 112672 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 327-444 chr6 147261265 147261553 + 2 NA intron (NM_139244, intron 5 of 25) intron (NM_139244, intron 5 of 25) -56795 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 263-353 chr6 46349015 46349178 + 2 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) -23204 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 533-162 chr4 95895044 95895480 + 2 NA Intergenic Intergenic 55169 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 166-32 chr14 101419076 101419192 + 2 NA Intergenic L1ME2z|LINE|L1 -11212 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 192-214 chr8 128408121 128408250 + 2 NA intron (NR_121672, intron 6 of 7) MIRc|SINE|MIR 156494 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 284-236 chr20 53311090 53311265 + 2 NA intron (NM_173485, intron 2 of 2) MamRep137|DNA|TcMar-Tigger 125894 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 431-308 chr8 138440215 138440551 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 56878 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 385-100 chr14 67886904 67887143 + 2 NA exon (NM_001321819, exon 7 of 11) exon (NM_001321819, exon 7 of 11) 63431 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 425-174 chr22 33500051 33500358 + 2 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -63535 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 656-75 chr22 32889504 32890056 + 2 NA intron (NM_003490, intron 4 of 13) intron (NM_003490, intron 4 of 13) 88964 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 291-93 chr12 29229932 29230093 + 2 NA intron (NM_001271784, intron 1 of 10) L2a|LINE|L2 6346 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 257-191 chr2 76737045 76737211 + 2 NA Intergenic Intergenic -248837 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 369-451 chrX 6746108 6746342 + 2 NA Intergenic Intergenic -211107 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 280-214 chr2 133154757 133154990 + 2 NA intron (NM_207481, intron 5 of 17) intron (NM_207481, intron 5 of 17) -111322 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 307-397 chr5 131988646 131988826 + 2 NA intron (NM_015256, intron 6 of 20) intron (NM_015256, intron 6 of 20) 22922 NM_015256 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 575-175 chr6 122245543 122245913 + 2 NA Intergenic L1M1|LINE|L1 -153823 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 412-305 chr7 34120734 34121073 + 2 NA intron (NM_133468, intron 14 of 15) L1ME3Cz|LINE|L1 215364 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 254-64 chr11 90934371 90934593 + 2 NA Intergenic AluSz6|SINE|Alu -65280 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 177-17 chr10 53225745 53225879 + 2 NA Intergenic L1MA4|LINE|L1 -454112 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 247-212 chr2 123883444 123883597 + 2 NA Intergenic L1M5|LINE|L1 141654 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 276-387 chr5 165506485 165506727 + 2 NA Intergenic Intergenic 1036327 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 150-51 chr2 74479940 74480026 + 2 NA intron (NM_001365575, intron 5 of 8) L1MC5|LINE|L1 3015 NM_001365575 84865 Hs.430199 NM_032779 ENSG00000135637 CCDC142 - coiled-coil domain containing 142 protein-coding 375-455 chr9 97720282 97720528 + 2 NA intron (NR_147055, intron 7 of 10) MLT1D|LTR|ERVL-MaLR -22996 NR_149093 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 266-243 chr3 40754730 40754907 + 2 NA Intergenic LTR16A1|LTR|ERVL 229858 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 289-386 chr5 117124874 117125064 + 2 NA Intergenic L1MCa|LINE|L1 -290543 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 660-35 chr18 79887531 79888138 + 2 NA intron (NM_012283, intron 1 of 1) intron (NM_012283, intron 1 of 1) 24166 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 603-32 chr12 61343245 61343648 + 2 NA Intergenic Intergenic 849393 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 364-456 chr8 130995882 130996175 + 2 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 44881 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 372-286 chr20 42240653 42240999 + 2 NA intron (NM_133170, intron 15 of 31) intron (NM_133170, intron 15 of 31) -444657 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 587-23 chr11 24236070 24236499 + 2 NA Intergenic L1ME1|LINE|L1 -260769 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 418-239 chr6 84897598 84897960 + 2 NA Intergenic Intergenic -133181 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 600-6 chr1 175455665 175456195 + 2 NA intron (NM_003285, intron 2 of 22) MER94|DNA|hAT-Blackjack -262943 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 177-11 chr1 197824683 197824830 + 2 NA Intergenic LTR101_Mam|LTR|ERVL -49276 NM_144977 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 506-76 chr13 83288014 83288385 + 2 NA Intergenic Intergenic 594194 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 258-254 chr3 39591064 39591269 + 2 NA Intergenic Intergenic 89100 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 485-9 chr1 82907635 82907920 + 2 NA intron (NR_147074, intron 2 of 10) L2a|LINE|L2 4594 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 402-133 chr19 36626360 36626705 + 2 NA exon (NM_032825, exon 5 of 5) exon (NM_032825, exon 5 of 5) 21219 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 252-352 chr5 156012830 156012956 + 2 NA Intergenic AluY|SINE|Alu -313864 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 359-79 chr11 15676017 15676252 + 2 NA intron (NM_001293172, intron 1 of 2) L1ME1|LINE|L1 32249 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 301-297 chr3 181392359 181392574 + 2 NA intron (NR_075091, intron 3 of 7) L1MA9|LINE|L1 50020 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 351-376 chr5 31794827 31795057 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 141217 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 363-171 chr16 80760653 80760846 + 2 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 43849 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 451-164 chr4 85410745 85411014 + 2 NA Intergenic MIR|SINE|MIR -64271 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 538-54 chr12 58315681 58316086 + 2 NA Intergenic Intergenic 227991 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 371-375 chr8 53684316 53684637 + 2 NA Intergenic L1MB5|LINE|L1 158566 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 307-276 chr20 52941538 52941810 + 2 NA Intergenic Intergenic -30684 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 449-77 chr14 53260415 53260651 + 2 NA Intergenic LTR3A|LTR|ERVK 107179 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 282-191 chr2 7748325 7748578 + 2 NA Intergenic MER57B2|LTR|ERV1 151204 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 294-81 chr12 41128068 41128294 + 2 NA Intergenic Intergenic -60139 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 279-57 chr10 111631101 111631260 + 2 NA Intergenic MIR|SINE|MIR 516889 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 446-325 chr9 22625742 22626122 + 2 NA Intergenic Intergenic -20268 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 332-227 chr19 31730654 31730942 + 2 NA Intergenic Intergenic 138517 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 219-48 chr11 44019025 44019191 + 2 NA Intergenic L1MB7|LINE|L1 -28873 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 304-443 chr5 163365652 163365930 + 2 NA Intergenic Intergenic -71780 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 252-269 chr3 99697753 99697930 + 2 NA intron (NM_001850, intron 2 of 4) L1PA6|LINE|L1 59247 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 365-238 chr20 58592028 58592242 + 2 NA intron (NR_034147, intron 6 of 6) MLT1D|LTR|ERVL-MaLR -42637 NR_125359 79160 Hs.280135 NR_125359 ENSG00000268941 LINC01711 - long intergenic non-protein coding RNA 1711 ncRNA 420-89 chr15 63200143 63200421 + 2 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) 10676 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 263-294 chr4 81169174 81169417 + 2 NA intron (NM_006259, intron 5 of 18) intron (NM_006259, intron 5 of 18) 4355 NR_125908 101928942 Hs.664002 NR_125908 ENSG00000251059 LOC101928942 - uncharacterized LOC101928942 ncRNA 231-219 chr3 26668823 26669045 + 2 NA intron (NM_001317810, intron 2 of 2) Charlie23a|DNA|hAT-Charlie -25623 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 438-16 chr1 177671502 177671755 + 2 NA Intergenic Intergenic -28896 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 455-269 chr8 52334241 52334586 + 2 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) 75343 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 314-83 chr10 130450100 130450291 + 2 NA Intergenic L1ME4a|LINE|L1 313786 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 589-46 chr17 74078765 74079162 + 2 NA Intergenic Intergenic -124715 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 232-385 chr8 124299365 124299500 + 2 NA Intergenic L1ME1|LINE|L1 -52034 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 294-437 chr7 52439889 52440075 + 2 NA Intergenic Intergenic -595651 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 675-70 chr5 54952849 54953399 + 2 NA Intergenic L1MEi|LINE|L1 32469 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 193-10 chr1 90877895 90878042 + 2 NA Intergenic L1MB7|LINE|L1 26209 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 382-47 chr10 93127776 93127969 + 2 NA Intergenic MIR|SINE|MIR 53979 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 323-24 chr1 114930412 114930729 + 2 NA intron (NM_001282542, intron 23 of 30) L1M4a2|LINE|L1 75707 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 142-84 chr9 73543610 73543690 + 2 NA Intergenic Intergenic 391785 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 523-223 chr5 92993256 92993621 + 2 NA Intergenic MIR3|SINE|MIR 577905 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 296-329 chr4 30526836 30527119 + 2 NA Intergenic L1MEd|LINE|L1 -193392 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 519-155 chr4 31626852 31627292 + 2 NA Intergenic Intergenic 120528 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 235-227 chr3 36988545 36988719 + 2 NA 3' UTR (NM_014805, exon 1 of 1) 3' UTR (NM_014805, exon 1 of 1) 4499 NM_014805 9852 Hs.28020 NM_014805 ENSG00000178567 EPM2AIP1 - EPM2A interacting protein 1 protein-coding 472-39 chr10 107260908 107261305 + 2 NA Intergenic L1M5|LINE|L1 -96400 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 385-368 chr7 135789961 135790172 + 2 NA Intergenic Intergenic -41253 NM_205855 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 545-88 chr16 79845216 79845661 + 2 NA Intergenic Intergenic 50189 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 529-49 chr12 61584417 61584742 + 2 NA Intergenic Intergenic 608260 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 371-281 chr4 73624034 73624376 + 2 NA Intergenic L2a|LINE|L2 -3574 NM_001270392 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 279-318 chr5 31001134 31001288 + 2 NA Intergenic MER112|DNA|hAT-Charlie -192475 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 534-31 chr10 65099821 65100304 + 2 NA Intergenic L1MC3|LINE|L1 -175544 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 180-5 chr1 77409389 77409479 + 2 NA intron (NM_012093, intron 6 of 13) L1PA14|LINE|L1 126347 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 308-427 chr6 82930510 82930789 + 2 NA intron (NR_146807, intron 10 of 10) THE1C-int|LTR|ERVL-MaLR 135192 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 197-82 chr19 22910120 22910277 + 2 NA Intergenic Intergenic 77907 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 390-330 chr6 88264523 88264836 + 2 NA Intergenic Intergenic -97330 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 267-57 chr10 99058655 99058844 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -134181 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 198-192 chr5 20013881 20014066 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -25773 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 364-423 chr7 108757765 108758033 + 2 NA Intergenic L1PA13|LINE|L1 126688 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 539-197 chr7 107348931 107349364 + 2 NA intron (NM_181733, intron 10 of 20) L1MEd|LINE|L1 -120910 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 513-32 chr10 64787105 64787516 + 2 NA Intergenic Intergenic -38218 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 216-61 chr11 92146102 92146316 + 2 NA Intergenic L1M3c|LINE|L1 -78825 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 274-411 chr9 31649202 31649367 + 2 NA Intergenic L1MB1|LINE|L1 -267794 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 354-65 chr10 124309437 124309682 + 2 NA Intergenic HAL1ME|LINE|L1 109364 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 336-592 chr9 137655520 137655739 + 2 NA intron (NM_001354612, intron 1 of 8) MER1B|DNA|hAT-Charlie 36624 NM_001354259 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 211-74 chr13 62444833 62444977 + 2 NA Intergenic Intergenic 121248 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 346-52 chr10 82664209 82664465 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -431417 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 275-306 chr6 16864298 16864500 + 2 NA Intergenic MIRc|SINE|MIR -102909 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 317-12 chr1 69768066 69768376 + 2 NA intron (NM_001370785, intron 3 of 26) intron (NM_001370785, intron 3 of 26) -151101 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 193-125 chr20 7551024 7551153 + 2 NA Intergenic Intergenic 179480 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 301-244 chr2 218114341 218114549 + 2 NA Intergenic HERVK9-int|LTR|ERVK -10849 NM_001168298 3579 Hs.846 NM_001557 ENSG00000180871 CXCR2 CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB C-X-C motif chemokine receptor 2 protein-coding 382-288 chr4 32261897 32262267 + 2 NA Intergenic Intergenic -88956 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 322-210 chr17 74421217 74421392 + 2 NA Intergenic AluJb|SINE|Alu -10784 NM_022036 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 315-116 chr13 23928308 23928539 + 2 NA intron (NR_073430, intron 3 of 4) intron (NR_073430, intron 3 of 4) 20892 NR_073430 400110 Hs.744780 NM_207439 ANKRD20A19P - ankyrin repeat domain 20 family member A19, pseudogene pseudo 261-246 chr3 97156135 97156313 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -283383 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 237-316 chr5 169775956 169776160 + 2 NA intron (NR_156756, intron 25 of 52) intron (NR_156756, intron 25 of 52) 138783 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 330-292 chr2 133969442 133969682 + 2 NA Intergenic Intergenic -150373 NM_001371457 231-19 chr1 173239468 173239649 + 2 NA non-coding (NR_037845, exon 3 of 3) non-coding (NR_037845, exon 3 of 3) -32227 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 207-192 chr3 94876807 94876972 + 2 NA Intergenic MER67D|LTR|ERV1 -61374 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 330-104 chr11 109612261 109612440 + 2 NA Intergenic Intergenic 190160 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 204-285 chr8 83151249 83151440 + 2 NA Intergenic Intergenic 239240 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 602-26 chr12 43624512 43624820 + 2 NA Intergenic L1ME1|LINE|L1 -72463 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 228-93 chr14 45960721 45960913 + 2 NA Intergenic MLT2C1|LTR|ERVL -103342 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 365-195 chr2 84799687 84800008 + 2 NA intron (NM_001370, intron 70 of 76) L1P4d|LINE|L1 81237 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 328-316 chr20 42756483 42756751 + 2 NA exon (NM_007050, exon 6 of 31) exon (NM_007050, exon 6 of 31) 71134 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 277-95 chr12 127723736 127723988 + 2 NA Intergenic Intergenic -68274 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 329-426 chr4 132986810 132986996 + 2 NA Intergenic Intergenic 162213 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 275-316 chr6 104506238 104506462 + 2 NA Intergenic Intergenic 353196 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 269-100 chr12 120362280 120362499 + 2 NA intron (NM_002442, intron 6 of 14) intron (NM_002442, intron 6 of 14) 6775 NM_002442 4440 Hs.158311 NM_002442 ENSG00000135097 MSI1 - musashi RNA binding protein 1 protein-coding 212-116 chr16 58932606 58932767 + 2 NA Intergenic MIR3|SINE|MIR -198370 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 464-136 chr2 180397599 180397943 + 2 NA Intergenic Intergenic -294333 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 359-271 chr2 234028974 234029195 + 2 NA Intergenic AluY|SINE|Alu -21618 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 259-35 chr10 15384473 15384730 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -13312 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 367-337 chr4 177416262 177416488 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 26062 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 265-82 chr12 85613802 85613950 + 2 NA Intergenic Intergenic 222533 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 351-374 chr5 26839366 26839696 + 2 NA Intergenic Intergenic 199055 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 375-6 chr1 55182815 55183088 + 2 NA intron (NM_015306, intron 1 of 67) AluSz6|SINE|Alu 32413 NM_015306 23358 Hs.477009 NM_015306 ENSG00000162402 USP24 - ubiquitin specific peptidase 24 protein-coding 442-290 chr8 97544121 97544455 + 2 NA Intergenic Intergenic -97791 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 315-79 chr11 21733032 21733220 + 2 NA Intergenic Intergenic -459959 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 312-29 chr1 238263146 238263403 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 222743 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 295-339 chr4 60477778 60477996 + 2 NA Intergenic Intergenic -444732 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 236-102 chr13 70176130 70176338 + 2 NA Intergenic Intergenic -67741 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 316-92 chr11 29086585 29086769 + 2 NA Intergenic L1MEg|LINE|L1 -507736 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 170-140 chr8 105513612 105513757 + 2 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 194141 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 272-330 chr5 19139659 19139895 + 2 NA Intergenic Intergenic 746495 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 255-60 chr11 54935471 54935632 + 2 NA Intergenic ALR/Alpha|Satellite|centr 228719 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 225-42 chr10 93159394 93159586 + 2 NA Intergenic Intergenic 85597 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 354-37 chr1 237602828 237603076 + 2 NA intron (NM_001035, intron 35 of 104) intron (NM_001035, intron 35 of 104) 131833 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 280-364 chr6 155874003 155874192 + 2 NA Intergenic L1MD1|LINE|L1 -72700 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 532-231 chr6 141203969 141204334 + 2 NA Intergenic Intergenic 520337 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 340-133 chr13 83280715 83280952 + 2 NA Intergenic Intergenic 601560 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 484-108 chr19 49382155 49382538 + 2 NA intron (NR_110729, intron 2 of 2) L1MEg|LINE|L1 5735 NR_110729 101928295 Hs.640180 NR_110729 ENSG00000268686 LOC101928295 - uncharacterized LOC101928295 ncRNA 187-111 chr3 90274954 90275099 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1167405 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 205-4 chr1 17065338 17065516 + 2 NA Intergenic AluSc5|SINE|Alu -11257 NM_003000 6390 Hs.465924 NM_003000 ENSG00000117118 SDHB CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP succinate dehydrogenase complex iron sulfur subunit B protein-coding 282-140 chr15 24787183 24787335 + 2 NA Intergenic Kanga1|DNA|TcMar-Tc2 -36349 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 389-157 chr2 26659470 26659759 + 2 NA Intergenic Intergenic -18248 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 481-281 chr7 55216689 55217150 + 2 NA Intergenic L1ME3G|LINE|L1 -27970 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 207-149 chr2 126004710 126004886 + 2 NA Intergenic AluJr4|SINE|Alu 113187 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 330-135 chr12 132877389 132877601 + 2 NA intron (NM_018223, intron 3 of 17) intron (NM_018223, intron 3 of 17) 10123 NM_001161346 55743 Hs.720197 NM_018223 ENSG00000072609 CHFR RNF116|RNF196 checkpoint with forkhead and ring finger domains protein-coding 295-425 chr7 3419979 3420186 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 118830 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 386-22 chr1 239229421 239229638 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -157039 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 358-345 chr4 116490596 116490939 + 2 NA Intergenic Intergenic 191042 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 407-211 chr3 169505275 169505600 + 2 NA intron (NM_001366473, intron 1 of 15) L1MA9|LINE|L1 57570 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 288-219 chr2 221651146 221651322 + 2 NA Intergenic Intergenic -77032 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 369-432 chr8 138946254 138946480 + 2 NA Intergenic AluSg7|SINE|Alu -32326 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 424-111 chr18 53968599 53968867 + 2 NA Intergenic L1MEg|LINE|L1 253679 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 280-165 chr17 73904052 73904300 + 2 NA Intergenic LTR16E1|LTR|ERVL -75639 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 354-166 chr16 83538007 83538228 + 2 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 29771 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 230-212 chr21 22424396 22424564 + 2 NA Intergenic Intergenic 325863 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 452-23 chr10 17055316 17055649 + 2 NA intron (NM_001081, intron 22 of 66) L1ME2|LINE|L1 74335 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 133-31 chr18 77160748 77160830 + 2 NA Intergenic Intergenic -28006 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 624-45 chr16 3815263 3815873 + 2 NA intron (NM_004380, intron 2 of 30) intron (NM_004380, intron 2 of 30) 64552 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 227-269 chr4 176607526 176607722 + 2 NA Intergenic MIR|SINE|MIR 185298 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 475-211 chr4 165828741 165829139 + 2 NA Intergenic Intergenic -44297 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 136-59 chr3 47556050 47556181 + 2 NA Intergenic L1M5|LINE|L1 22750 NM_006574 10675 Hs.45127 NM_006574 ENSG00000114646 CSPG5 NGC chondroitin sulfate proteoglycan 5 protein-coding 214-227 chr3 181977340 181977518 + 2 NA intron (NR_104146, intron 5 of 7) intron (NR_104146, intron 5 of 7) 25065 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 427-230 chr6 125625222 125625506 + 2 NA Intergenic L2|LINE|L2 -48989 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 564-155 chr5 75904577 75905122 + 2 NA Intergenic MER124|DNA?|DNA? -178534 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 201-162 chr3 126785564 126785745 + 2 NA intron (NM_032343, intron 4 of 7) L1MB4|LINE|L1 81414 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 458-48 chr12 46503598 46503982 + 2 NA intron (NR_125380, intron 3 of 3) MLT1A0|LTR|ERVL-MaLR 119683 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 186-136 chr6 48529475 48529651 + 2 NA Intergenic L1MEg|LINE|L1 -460874 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 543-6 chr1 88591982 88592499 + 2 NA intron (NR_110682, intron 1 of 3) L1MA3|LINE|L1 -91904 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 303-154 chr16 9752466 9752658 + 2 NA TTS (NM_000833) TTS (NM_000833) -297057 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 380-143 chr16 63816317 63816622 + 2 NA Intergenic Intergenic 1305594 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 296-462 chr8 77386528 77386772 + 2 NA Intergenic Intergenic -64047 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 342-155 chr15 27739204 27739424 + 2 NA Intergenic Intergenic 360001 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 410-87 chr14 71305814 71306157 + 2 NA Intergenic Intergenic -14491 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 466-169 chr3 4202294 4202662 + 2 NA Intergenic L1MA3|LINE|L1 -100826 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 323-544 chr8 79307352 79307536 + 2 NA Intergenic L1MA9|LINE|L1 -24744 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 172-31 chr12 90535563 90535719 + 2 NA Intergenic Intergenic 242323 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 484-148 chr2 211022742 211023065 + 2 NA Intergenic L1PB1|LINE|L1 405332 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 334-372 chr4 27069681 27069879 + 2 NA Intergenic L1M5|LINE|L1 -147699 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 247-405 chr8 88179259 88179438 + 2 NA intron (NM_005941, intron 3 of 9) L1MC2|LINE|L1 148135 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 305-231 chr19 56428151 56428358 + 2 NA TTS (NM_001159861) TTS (NM_001159861) 23922 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 241-355 chr7 4447832 4448034 + 2 NA Intergenic L2a|LINE|L2 -234362 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 373-407 chr8 79257254 79257559 + 2 NA Intergenic Intergenic -74782 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 154-14 chr10 56769263 56769350 + 2 NA Intergenic LOR1-int|LTR|ERV1 -408033 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 306-4 chr1 33560640 33560820 + 2 NA intron (NM_001281956, intron 53 of 70) L2a|LINE|L2 88085 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 207-26 chr1 227314986 227315178 + 2 NA intron (NM_001366019, intron 1 of 36) intron (NM_001366019, intron 1 of 36) 3410 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 261-361 chr7 87788948 87789182 + 2 NA intron (NM_001134406, intron 8 of 9) intron (NM_001134406, intron 8 of 9) -75742 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 479-223 chr6 148219963 148220330 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -52182 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 417-163 chr20 23349035 23349338 + 2 NA Intergenic Intergenic -1605 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 226-85 chr13 112811956 112812113 + 2 NA intron (NM_032189, intron 5 of 28) L1MA4|LINE|L1 -57303 NR_109811 100874205 Hs.658692 NR_046661 ENSG00000232684 ATP11A-AS1 - ATP11A antisense RNA 1 ncRNA 347-49 chr10 49042363 49042612 + 2 NA intron (NM_001031746, intron 7 of 7) intron (NM_001031746, intron 7 of 7) -56900 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 314-507 chr6 109206247 109206554 + 2 NA non-coding (NR_152435, exon 10 of 46) non-coding (NR_152435, exon 10 of 46) 40569 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 212-111 chr15 96478166 96478295 + 2 NA Intergenic L1ME1|LINE|L1 144465 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 324-109 chr12 13111316 13111568 + 2 NA Intergenic Intergenic -7775 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 448-182 chr4 64106717 64106999 + 2 NA Intergenic Intergenic 302592 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 220-287 chr5 71843083 71843277 + 2 NA Intergenic Intergenic 123905 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 532-38 chr11 133793891 133794237 + 2 NA intron (NR_120444, intron 2 of 2) intron (NR_120444, intron 2 of 2) 16312 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 201-257 chr9 69310132 69310282 + 2 NA Intergenic L1MB2|LINE|L1 -3151 NR_047671 100885775 Hs.49768 NR_047671 ENSG00000278910 BANCR LINC00586 BRAF-activated non-protein coding RNA ncRNA 332-557 chr8 142813025 142813312 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -21633 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 303-8 chr1 89149944 89150241 + 2 NA intron (NM_207398, intron 6 of 10) intron (NM_207398, intron 6 of 10) -23978 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 488-192 chr4 96495354 96495710 + 2 NA intron (NR_147149, intron 2 of 3) L1M2|LINE|L1 184829 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 313-292 chr2 209271604 209271800 + 2 NA Intergenic Intergenic -152345 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 248-258 chr3 178899058 178899297 + 2 NA Intergenic X7B_LINE|LINE|CR1 -38772 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 301-321 chr4 78067367 78067558 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 9892 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 493-136 chr2 32393385 32393780 + 2 NA intron (NM_016252, intron 5 of 73) AluJo|SINE|Alu 36554 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 323-533 chr8 46511209 46511370 + 2 NA Intergenic ALR/Alpha|Satellite|centr 106354 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 333-267 chr2 126422927 126423167 + 2 NA Intergenic L1MA7|LINE|L1 -232888 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 568-123 chr20 59860956 59861364 + 2 NA Intergenic L1M4|LINE|L1 72477 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 296-147 chr14 81879452 81879663 + 2 NA Intergenic Intergenic -136419 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 361-93 chr12 14520106 14520421 + 2 NA intron (NM_024829, intron 6 of 10) intron (NM_024829, intron 6 of 10) -47469 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 408-284 chr5 169539056 169539306 + 2 NA Intergenic Intergenic -44592 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 494-25 chr10 58516863 58517269 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 4194 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 504-267 chr8 129523619 129523941 + 2 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -39638 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 289-484 chr9 12122367 12122540 + 2 NA Intergenic L1MA4|LINE|L1 -570932 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 210 chr1 38268068 38268253 + 2 NA Intergenic L2c|LINE|L2 -53393 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 382-240 chr20 41597721 41598070 + 2 NA intron (NM_032221, intron 1 of 36) HERVIP10B3-int|LTR|ERV1 20482 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 542-140 chr3 102153173 102153657 + 2 NA Intergenic L1MA3|LINE|L1 -10290 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 288-235 chr20 63012813 63013048 + 2 NA intron (NR_033370, intron 1 of 4) L1MCa|LINE|L1 3547 NR_033370 63930 Hs.640084 NR_033370 ENSG00000272259 LINC01749 - long intergenic non-protein coding RNA 1749 ncRNA 292-467 chr9 90481610 90481867 + 2 NA intron (NR_034157, intron 5 of 5) intron (NR_034157, intron 5 of 5) -48249 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 616-24 chr11 41997675 41998093 + 2 NA Intergenic Intergenic 87574 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 368-299 chr3 104476056 104476317 + 2 NA Intergenic L1PREC2|LINE|L1 -890527 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 201-231 chr7 141222840 141223033 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) 148872 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 179-16 chr12 40081486 40081598 + 2 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 24539 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 278-388 chr7 15877049 15877300 + 2 NA Intergenic L2a|LINE|L2 188796 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 319-178 chr16 74798832 74799140 + 2 NA Intergenic AluJr|SINE|Alu -24166 NM_024306 79152 Hs.461329 NM_024306 ENSG00000103089 FA2H FAAH|FAH1|FAXDC1|SCS7|SPG35 fatty acid 2-hydroxylase protein-coding 484-180 chr3 112369337 112369696 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 36360 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 284-315 chr5 38296711 38296891 + 2 NA intron (NM_152403, intron 1 of 21) L1MD3|LINE|L1 -5815 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 162-3 chr1 38591054 38591176 + 2 NA Intergenic L1M5|LINE|L1 115919 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 561-36 chr11 58688788 58689118 + 2 NA Intergenic Intergenic 42990 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 526-233 chr7 157918789 157919186 + 2 NA intron (NM_130843, intron 10 of 21) MIRb|SINE|MIR 64402 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 595-170 chr9 26820705 26821238 + 2 NA Intergenic Intergenic 71831 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 537-270 chr9 29297532 29297905 + 2 NA Intergenic Intergenic -84117 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 119-7 chr1 241619338 241619423 + 2 NA intron (NM_014322, intron 1 of 3) MER91A|DNA|hAT-Tip100 16550 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 362-374 chr6 44620745 44620943 + 2 NA Intergenic Intergenic -68963 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 269-200 chr2 106736922 106737142 + 2 NA Intergenic Intergenic 148996 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 386-233 chr3 40534531 40534761 + 2 NA 3' UTR (NM_198484, exon 5 of 5) 3' UTR (NM_198484, exon 5 of 5) 9686 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 359-246 chr2 132398020 132398216 + 2 NA Intergenic MIRb|SINE|MIR -18687 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 331-216 chr18 12563988 12564314 + 2 NA intron (NM_020148, intron 2 of 15) L1M4|LINE|L1 92581 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 371-176 chr2 103848313 103848548 + 2 NA Intergenic L1PA13|LINE|L1 559902 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 410-252 chr5 130846950 130847272 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 318145 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 546-59 chr12 114142358 114142725 + 2 NA Intergenic Intergenic 99229 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 212-70 chr11 88500323 88500447 + 2 NA Intergenic L1M5|LINE|L1 -4191 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 376-439 chrX 83241676 83241944 + 2 NA Intergenic L1MA1|LINE|L1 -266480 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 440-114 chr2 46378994 46379382 + 2 NA intron (NM_001430, intron 11 of 15) intron (NM_001430, intron 11 of 15) 14979 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 529-54 chr12 110879850 110880280 + 2 NA exon (NM_001286243, exon 5 of 11) exon (NM_001286243, exon 5 of 11) 33078 NM_152591 160762 Hs.437141 NM_152591 ENSG00000173093 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 346-412 chr5 167476313 167476653 + 2 NA intron (NM_001122679, intron 3 of 29) Charlie1a|DNA|hAT-Charlie -97176 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 604-173 chr9 80516473 80516844 + 2 NA Intergenic L1PA11|LINE|L1 541635 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 250-325 chr4 144359723 144359913 + 2 NA Intergenic L2c|LINE|L2 -219100 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 600-101 chr5 35084036 35084414 + 2 NA intron (NM_001204314, intron 2 of 6) intron (NM_001204314, intron 2 of 6) 33897 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 361-445 chr8 83180157 83180367 + 2 NA Intergenic LTR40a|LTR|ERVL -223496 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 227-276 chr5 20634729 20634882 + 2 NA intron (NR_149120, intron 1 of 11) L1MA4A|LINE|L1 -19270 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 532-108 chr19 36721560 36721958 + 2 NA TTS (NM_001300979) TTS (NM_001300979) 18078 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 306-152 chr14 73507079 73507378 + 2 NA intron (NM_001220484, intron 9 of 17) intron (NM_001220484, intron 9 of 17) 16295 NM_024644 79697 Hs.509916 NM_024644 ENSG00000170468 RIOX1 C14orf169|JMJD9|MAPJD|NO66|ROX|URLC2|hsNO66 ribosomal oxygenase 1 protein-coding 320-452 chr5 101414476 101414785 + 2 NA Intergenic Intergenic -511348 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 219-221 chr22 28409176 28409368 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -50597 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 554-36 chr10 91547535 91547874 + 2 NA intron (NR_024467, intron 1 of 4) MLT1K|LTR|ERVL-MaLR 63756 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 372-108 chr12 34415228 34415495 + 2 NA Intergenic ALR/Alpha|Satellite|centr 392865 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 353-507 chr8 21258997 21259207 + 2 NA Intergenic L1ME1|LINE|L1 -39137 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 382-135 chr16 79952640 79952935 + 2 NA Intergenic L2a|LINE|L2 157538 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 345-243 chr2 29827262 29827544 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 94183 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 429-16 chr1 162254677 162254961 + 2 NA intron (NM_014697, intron 2 of 9) MIRc|SINE|MIR -87727 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 464-248 chr8 27208678 27209018 + 2 NA Intergenic Intergenic 49556 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 331-89 chr11 55981454 55981776 + 2 NA intron (NR_027688, intron 3 of 3) SATR1|Satellite|Satellite 4790 NR_027688 219445 Hs.350816 NR_027688 OR7E5P OR11-12|OR11-156|OR7F5P olfactory receptor family 7 subfamily E member 5 pseudogene pseudo 391-55 chr11 27138261 27138537 + 2 NA intron (NR_125767, intron 3 of 4) intron (NR_125767, intron 3 of 4) 80369 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 537-122 chr2 118388436 118388817 + 2 NA Intergenic Intergenic -202240 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 221-215 chr4 54884230 54884418 + 2 NA Intergenic Intergenic 226396 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 495-149 chr3 7831728 7832215 + 2 NA Intergenic L1ME3A|LINE|L1 184336 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 287-18 chr1 111044581 111044860 + 2 NA Intergenic LTR87|LTR|ERVL? -80776 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 233-37 chr10 53691166 53691326 + 2 NA Intergenic Intergenic -794984 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 435-147 chr3 7448269 7448562 + 2 NA intron (NM_000844, intron 5 of 9) MLT1L|LTR|ERVL-MaLR 86869 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 226-117 chr16 59536569 59536698 + 2 NA Intergenic Intergenic 218558 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 245-74 chr11 55573298 55573473 + 2 NA TTS (NM_001004701) TTS (NM_001004701) 1257 NM_001004701 219428 Hs.553619 NM_001004701 ENSG00000279514 OR4C16 OR11-135 olfactory receptor family 4 subfamily C member 16 (gene/pseudogene) protein-coding 354-199 chr2 11501285 11501490 + 2 NA Intergenic Intergenic -32658 NM_014668 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 199-147 chr21 23462917 23463093 + 2 NA Intergenic L1MDa|LINE|L1 -78170 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 195-158 chr4 21362074 21362253 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -58257 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 332-306 chr21 34506094 34506321 + 2 NA intron (NM_000219, intron 2 of 3) intron (NM_000219, intron 2 of 3) 5108 NM_001270403 3753 Hs.121495 NM_000219 ENSG00000180509 KCNE1 ISK|JLNS|JLNS2|LQT2/5|LQT5|MinK potassium voltage-gated channel subfamily E regulatory subunit 1 protein-coding 306-517 chr8 111246168 111246380 + 2 NA Intergenic Intergenic -10071 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 381-13 chr1 152334348 152334634 + 2 NA intron (NR_103778, intron 3 of 6) L1MA6|LINE|L1 -2577 NR_103779 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 376-11 chr1 90397161 90397533 + 2 NA Intergenic L1MD1|LINE|L1 -260403 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 453-286 chr8 106787030 106787307 + 2 NA Intergenic L2c|LINE|L2 -16924 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 309-19 chr1 167671164 167671349 + 2 NA intron (NM_001322923, intron 1 of 5) intron (NM_001322923, intron 1 of 5) 41024 NM_052862 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 481-149 chr2 114275366 114275704 + 2 NA Intergenic AluSz6|SINE|Alu -167106 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 449-300 chrX 83056465 83056804 + 2 NA Intergenic L1MB7|LINE|L1 -451656 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 208-36 chr11 28460362 28460567 + 2 NA Intergenic Intergenic 17084 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 195-73 chr16 6319909 6320035 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 300269 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 180-129 chr5 18612313 18612449 + 2 NA Intergenic AluJo|SINE|Alu 805107 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 425-272 chr6 166118980 166119344 + 2 NA Intergenic Intergenic 21442 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 429-51 chr11 39607670 39608049 + 2 NA Intergenic Intergenic 685271 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 384-31 chr10 12748998 12749247 + 2 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -23769 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 692-16 chr12 1906377 1906823 + 2 NA intron (NM_172364, intron 6 of 37).2 intron (NM_172364, intron 6 of 37).2 12052 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 376-414 chr8 129606739 129607026 + 2 NA intron (NR_130917, intron 1 of 3) L1PA4|LINE|L1 -31864 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 316-380 chr4 14351060 14351288 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 239206 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 279-271 chr3 118367214 118367412 + 2 NA Intergenic L1M4b|LINE|L1 -274455 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 203-159 chr3 186896453 186896589 + 2 NA Intergenic L2|LINE|L2 -34005 NM_173216 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 266-325 chr5 43845227 43845371 + 2 NA Intergenic Intergenic -242069 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 249-59 chr10 99271753 99271920 + 2 NA Intergenic L1PB1|LINE|L1 -35961 NM_021828 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 349-461 chr6 132626106 132626292 + 2 NA Intergenic L1M5|LINE|L1 -1924 NM_001033080 9287 Hs.272382 NM_014626 ENSG00000146378 TAAR2 GPR58|taR-2 trace amine associated receptor 2 (gene/pseudogene) protein-coding 256-447 chr9 26345952 26346173 + 2 NA Intergenic L1MA9|LINE|L1 279387 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 441-133 chr2 155465078 155465360 + 2 NA Intergenic Intergenic 766524 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 304-14 chr1 99300676 99300858 + 2 NA intron (NM_014839, intron 4 of 6) intron (NM_014839, intron 4 of 6) 36475 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 618-27 chr12 84807797 84808237 + 2 NA Intergenic Intergenic 104782 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 426-38 chr11 16223341 16223738 + 2 NA intron (NM_033326, intron 4 of 15) intron (NM_033326, intron 4 of 15) 133007 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 222-253 chr3 174220666 174220827 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -299950 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 446-188 chr3 83156165 83156557 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 1170219 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 317-69 chr10 117601856 117602088 + 2 NA Intergenic L1ME3G|LINE|L1 -56904 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 286-91 chr12 55476806 55476979 + 2 NA Intergenic Intergenic -6754 NM_001005499 390327 Hs.632718 NM_001005499 ENSG00000184954 OR6C70 - olfactory receptor family 6 subfamily C member 70 protein-coding 714-15 chr11 115036336 115036758 + 2 NA Intergenic HAL1|LINE|L1 -297030 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 233-214 chr21 35109258 35109433 + 2 NA Intergenic Intergenic -60047 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 259-423 chr8 139580628 139580844 + 2 NA Intergenic Intergenic 122387 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 947-27 chr7 131186934 131187686 + 2 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 77216 NM_001145354 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 359-248 chr2 136707504 136707719 + 2 NA Intergenic Intergenic -57934 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 300-383 chr6 9573979 9574206 + 2 NA Intergenic Intergenic -830410 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 262-237 chr2 220804878 220805082 + 2 NA Intergenic MIRb|SINE|MIR 767324 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 381-351 chr7 22626735 22627088 + 2 NA Intergenic Intergenic 38622 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 350-88 chr12 17330556 17330812 + 2 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat 258394 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 250-435 chr8 103800461 103800614 + 2 NA intron (NM_001348497, intron 3 of 22) L1MD|LINE|L1 -18683 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 243-348 chr5 19343501 19343700 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 542672 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 231-355 chr8 90252508 90252666 + 2 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 31099 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 351-36 chr10 37925424 37925641 + 2 NA Intergenic L1MC|LINE|L1 50448 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 281-310 chr4 42968439 42968632 + 2 NA intron (NM_001080476, intron 2 of 3) intron (NM_001080476, intron 2 of 3) 75269 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 148-40 chr2 7514625 7514747 + 2 NA Intergenic Intergenic 93425 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 292-415 chr7 85974064 85974339 + 2 NA Intergenic Intergenic 553079 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 330-7 chr1 37263140 37263374 + 2 NA Intergenic MIRb|SINE|MIR 101694 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 236-12 chr1 98147113 98147273 + 2 NA Intergenic L1MC3|LINE|L1 -63518 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 261-145 chr17 58800019 58800272 + 2 NA intron (NM_014906, intron 1 of 6) L1ME2z|LINE|L1 44276 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 242-49 chr10 129402307 129402492 + 2 NA Intergenic Intergenic -64842 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 339-50 chr10 11225535 11225764 + 2 NA intron (NM_001025076, intron 3 of 13) intron (NM_001025076, intron 3 of 13) 60619 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 438-186 chr3 191717099 191717392 + 2 NA Intergenic Intergenic 256082 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 476-78 chr14 42551937 42552291 + 2 NA Intergenic Intergenic 945258 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 340-152 chr14 63158854 63159158 + 2 NA Intergenic Intergenic -45437 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 408-96 chr13 65584843 65585142 + 2 NA Intergenic Intergenic -281055 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 560-100 chr20 42276408 42276791 + 2 NA intron (NM_133170, intron 13 of 31) intron (NM_133170, intron 13 of 31) -408884 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 396-268 chr5 5994279 5994497 + 2 NA Intergenic L1PA15|LINE|L1 342904 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 204-86 chr14 45535194 45535354 + 2 NA Intergenic L1PA10|LINE|L1 180328 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 339-138 chr12 133047904 133048229 + 2 NA exon (NM_003428, exon 3 of 5) exon (NM_003428, exon 3 of 5) 10484 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 348-128 chr13 104281232 104281567 + 2 NA Intergenic L1ME3E|LINE|L1 856199 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 278-459 chr9 127274916 127275072 + 2 NA intron (NR_104591, intron 1 of 26) intron (NR_104591, intron 1 of 26) 10220 NM_032293 84253 Hs.29304 NM_032293 ENSG00000136895 GARNL3 bA356B19.1 GTPase activating Rap/RanGAP domain like 3 protein-coding 596-17 chr1 244577957 244578487 + 2 NA intron (NM_001130957, intron 11 of 21) AluSq|SINE|Alu -74826 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 212-264 chr5 102106559 102106767 + 2 NA Intergenic L1M1|LINE|L1 189621 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 167-13 chr1 191538711 191538837 + 2 NA Intergenic Intergenic -310276 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 305-155 chr14 71220878 71221047 + 2 NA Intergenic Intergenic -99514 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 439-209 chr4 77185682 77185981 + 2 NA Intergenic MIRb|SINE|MIR 28624 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 543-211 chr6 1090272 1090586 + 2 NA intron (NR_027116, intron 1 of 3) intron (NR_027116, intron 1 of 3) 10903 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 166-97 chr5 77527282 77527413 + 2 NA Intergenic L1MB5|LINE|L1 -35031 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 579-39 chr14 75415593 75416061 + 2 NA Intergenic Intergenic -11897 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 220-5 chr1 66416876 66417075 + 2 NA Intergenic L1MA7|LINE|L1 62440 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 439-310 chr9 107365851 107366213 + 2 NA Intergenic Intergenic 81263 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 338-349 chr3 106801452 106801625 + 2 NA Intergenic L1ME2|LINE|L1 439100 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 246-370 chr7 45449218 45449414 + 2 NA Intergenic MER70A|LTR|ERVL -124824 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 487-80 chr14 31059891 31060219 + 2 NA intron (NM_001254728, intron 1 of 5) (ATAT)n|Simple_repeat|Simple_repeat 33412 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 470-21 chr10 29184512 29184894 + 2 NA Intergenic Intergenic -104367 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 369-204 chr2 104669875 104670173 + 2 NA Intergenic Intergenic 87695 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 384-314 chr6 37969453 37969681 + 2 NA intron (NM_021943, intron 2 of 5) MER47A|DNA|TcMar-Tigger 149840 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 141-37 chr2 10133557 10133682 + 2 NA Intergenic Intergenic -7763 NR_161344 348738 Hs.454981 NR_161344 ENSG00000171848 C2orf48 - chromosome 2 open reading frame 48 ncRNA 206-19 chr1 185870096 185870247 + 2 NA intron (NM_031935, intron 4 of 106) intron (NM_031935, intron 4 of 106) 135780 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 322-488 chr7 46200612 46200821 + 2 NA Intergenic Intergenic -279444 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 431-138 chr2 108229078 108229407 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -10726 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 588-49 chr16 47720588 47721011 + 2 NA Intergenic L2a|LINE|L2 -137782 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 397-30 chr10 57037716 57038025 + 2 NA Intergenic Intergenic 266689 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 234-17 chr1 147235349 147235570 + 2 NA intron (NM_001348451, intron 2 of 23) intron (NM_001348451, intron 2 of 23) -7225 NR_145689 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 233-99 chr14 67726454 67726668 + 2 NA intron (NM_152443, intron 6 of 8) intron (NM_152443, intron 6 of 8) 24675 NM_152443 145226 Hs.415322 NM_152443 ENSG00000139988 RDH12 LCA13|RP53|SDR7C2 retinol dehydrogenase 12 protein-coding 154-13 chr10 54312355 54312491 + 2 NA intron (NM_001354411, intron 8 of 34) MLT1G1|LTR|ERVL-MaLR -173807 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 480-160 chr2 158084136 158084482 + 2 NA intron (NM_001135098, intron 2 of 8) L1PB1|LINE|L1 -17561 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 220-125 chr16 76149877 76150040 + 2 NA Intergenic L1PA16|LINE|L1 -127443 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 249-173 chr19 28565362 28565533 + 2 NA intron (NR_110759, intron 5 of 9) LTR37B|LTR|ERV1 -41241 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 372-206 chr19 29123203 29123443 + 2 NA Intergenic AluY|SINE|Alu 89828 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 242-365 chr7 34420031 34420228 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -238089 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 614-18 chr11 81315237 81315692 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -552661 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 513-210 chr4 104314343 104314808 + 2 NA Intergenic AluYm1|SINE|Alu -176390 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 165-47 chr19 37374493 37374620 + 2 NA intron (NM_032453, intron 2 of 4) L2a|LINE|L2 3457 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 336-409 chr4 55118238 55118567 + 2 NA intron (NM_002253, intron 3 of 29) intron (NM_002253, intron 3 of 29) 7193 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 192-135 chr3 109598200 109598360 + 2 NA Intergenic Intergenic -4548 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 148-48 chr20 49961669 49961776 + 2 NA Intergenic MER101-int|LTR|ERV1 -21258 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 232-280 chr4 142600400 142600542 + 2 NA intron (NM_003866, intron 2 of 26) L1PA11|LINE|L1 246064 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 267-203 chr2 123554369 123554571 + 2 NA Intergenic L1MB5|LINE|L1 470704 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 201-125 chr2 130936763 130936880 + 2 NA intron (NM_001367493, intron 3 of 13) L1MB5|LINE|L1 99907 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 340-83 chr11 88254486 88254707 + 2 NA Intergenic L1P4|LINE|L1 78094 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 315-26 chr1 173334058 173334289 + 2 NA intron (NR_037845, intron 2 of 2) ERVL-B4-int|LTR|ERVL -126842 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 502-211 chr5 15113881 15114314 + 2 NA Intergenic MamRep4096|DNA|hAT-Tip100 152463 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 343-592 chrX 73190732 73190999 + 2 NA Intergenic Intergenic 23986 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 266-129 chr15 59659474 59659671 + 2 NA 3' UTR (NM_001368061, exon 8 of 8) 3' UTR (NM_001368061, exon 8 of 8) -2057 NM_001320930 2958 Hs.512934 NM_004492 ENSG00000140307 GTF2A2 HsT18745|T18745|TF2A2|TFIIA|TFIIA-12|TFIIA-gamma|TFIIAS general transcription factor IIA subunit 2 protein-coding 751-67 chr6 40238255 40238821 + 2 NA Intergenic L1PA14|LINE|L1 117468 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 411-233 chr5 106008804 106009029 + 2 NA Intergenic L1MDb|LINE|L1 909442 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 317-303 chr3 73358309 73358568 + 2 NA Intergenic L1PA16|LINE|L1 75557 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 342-475 chr7 9657622 9657856 + 2 NA Intergenic Intergenic 23469 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 304-112 chr12 61202124 61202363 + 2 NA Intergenic Intergenic 990596 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 304-27 chr1 187467461 187467630 + 2 NA intron (NR_132374, intron 1 of 2) LTR8A|LTR|ERV1 23917 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 362-261 chr22 49174631 49174936 + 2 NA Intergenic L1ME2|LINE|L1 308013 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 335-370 chr3 183445130 183445391 + 2 NA Intergenic Intergenic -2348 NR_038302 100505687 Hs.551751 NR_038301 ENSG00000240024 LINC00888 - long intergenic non-protein coding RNA 888 ncRNA 214-215 chr3 121145600 121145780 + 2 NA intron (NR_145517, intron 7 of 8) L1ME3|LINE|L1 96050 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 205-249 chr6 138158603 138158734 + 2 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat -3271 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 452-88 chr15 41679013 41679458 + 2 NA intron (NM_001164273, intron 2 of 23) AluSx3|SINE|Alu -12350 NR_030356 693211 NR_030356 ENSG00000207766 MIR626 MIRN626|hsa-mir-626 microRNA 626 ncRNA 327-355 chr4 30431539 30431827 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger -288686 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 268-400 chr8 87517496 87517731 + 2 NA Intergenic Intergenic 356402 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 269-251 chr3 63038619 63038869 + 2 NA Intergenic Intergenic -63944 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 750-74 chr8 140194466 140194934 + 2 NA intron (NM_001160372, intron 17 of 22) L2a|LINE|L2 -94165 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 354-39 chr10 10346670 10346987 + 2 NA Intergenic Intergenic 115521 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 207-102 chr17 5105756 5105957 + 2 NA exon (NM_001320953, exon 6 of 6) exon (NM_001320953, exon 6 of 6) -6079 NR_135658 101928000 Hs.660048 NR_135657 ENSG00000234327 LOC101928000 - uncharacterized LOC101928000 ncRNA 601-63 chr18 32146995 32147405 + 2 NA Intergenic Intergenic -42839 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 366-207 chr2 100224678 100224947 + 2 NA intron (NR_103730, intron 1 of 2) L2a|LINE|L2 16558 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 350-460 chr6 163115444 163115741 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -61431 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 344-85 chr11 100495537 100495733 + 2 NA Intergenic L1PB3|LINE|L1 -191653 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 253-190 chr2 109057469 109057648 + 2 NA Intergenic Intergenic -68338 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 454-249 chr5 2990039 2990307 + 2 NA Intergenic Intergenic 72319 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 521-52 chr11 86089685 86090163 + 2 NA Intergenic Intergenic -20064 NM_001206947 8301 Hs.163893 NM_007166 ENSG00000073921 PICALM CALM|CLTH|LAP phosphatidylinositol binding clathrin assembly protein protein-coding 159-7 chr1 197636982 197637094 + 2 NA intron (NR_125340, intron 9 of 19) intron (NR_125340, intron 9 of 19) 138442 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 759-23 chr14 59817814 59818367 + 2 NA intron (NM_021136, intron 1 of 8) L1PA15|LINE|L1 52686 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 243-285 chr3 86117519 86117720 + 2 NA Intergenic LTR47B4|LTR|ERVL -289569 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 245-77 chr11 83360371 83360559 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -74058 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 404-75 chr12 23599608 23599925 + 2 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) -15180 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 459-127 chr19 55894118 55894459 + 2 NA intron (NM_001321057, intron 11 of 11) AluJr|SINE|Alu 38048 NM_001321057 126204 Hs.446924 NM_176810 ENSG00000173572 NLRP13 CLR19.7|NALP13|NOD14|PAN13 NLR family pyrin domain containing 13 protein-coding 536-137 chr2 207040055 207040409 + 2 NA Intergenic Intergenic 69841 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 316-61 chr10 30889076 30889299 + 2 NA intron (NM_001143766, intron 5 of 7) intron (NM_001143766, intron 5 of 7) 110330 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 223-30 chr10 27733897 27734105 + 2 NA intron (NM_001242702, intron 5 of 6) intron (NM_001242702, intron 5 of 6) -10614 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 303-412 chr7 4422938 4423141 + 2 NA Intergenic AluSz|SINE|Alu -259256 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 334-162 chr14 87313977 87314176 + 2 NA Intergenic Intergenic 341218 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 355-142 chr13 62147711 62147940 + 2 NA Intergenic L1MA4|LINE|L1 -64457 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 306-70 chr11 14606032 14606278 + 2 NA intron (NM_148976, intron 2 of 10) L1PA16|LINE|L1 37479 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 515-41 chr11 38860386 38860873 + 2 NA Intergenic AluY|SINE|Alu 211771 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 133-54 chr4 67471545 67471627 + 2 NA non-coding (NR_155754, exon 19 of 19) non-coding (NR_155754, exon 19 of 19) -49586 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 448-200 chr5 8973346 8973623 + 2 NA Intergenic L1MA4A|LINE|L1 80411 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 193-103 chr2 57658959 57659104 + 2 NA Intergenic Intergenic -248620 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 541-43 chr12 33548318 33548771 + 2 NA Intergenic Intergenic -108725 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 191-81 chr17 65269612 65269757 + 2 NA Intergenic Intergenic 132314 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 268-89 chr12 48452417 48452629 + 2 NA Intergenic L1PA11|LINE|L1 -20142 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 132-2 chr1 169037031 169037140 + 2 NA intron (NR_104091, intron 3 of 4) L1MA4|LINE|L1 49920 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 423-124 chr2 14927415 14927725 + 2 NA Intergenic L1MB3|LINE|L1 294853 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 405-261 chr5 131545883 131546222 + 2 NA intron (NM_016340, intron 6 of 27) intron (NM_016340, intron 6 of 27) 89177 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 417-90 chr15 27145079 27145352 + 2 NA intron (NM_001270873, intron 3 of 5) L1M4|LINE|L1 16104 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 366-107 chr12 74811199 74811517 + 2 NA Intergenic Intergenic 273523 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 366-264 chr22 40077928 40078135 + 2 NA intron (NM_001024843, intron 1 of 23) L1ME4a|LINE|L1 33214 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 297-322 chr4 39608376 39608638 + 2 NA intron (NM_174921, intron 1 of 4) L1MB4|LINE|L1 18614 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 594-144 chr7 148558629 148559100 + 2 NA Intergenic Intergenic -31902 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 209-244 chr5 3702073 3702262 + 2 NA Intergenic L1ME5|LINE|L1 106335 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 562-161 chr4 60273854 60274288 + 2 NA Intergenic Intergenic -648548 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 483-272 chr8 119649723 119650138 + 2 NA intron (NM_001330600, intron 1 of 25) L1MB8|LINE|L1 -11091 NM_001130863 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 346-275 chr2 214818712 214819035 + 2 NA intron (NR_110292, intron 1 of 3) intron (NR_110292, intron 1 of 3) 8644 NR_110292 101928103 Hs.665619 NR_110292 ENSG00000229267 SNHG31 - small nucleolar RNA host gene 31 ncRNA 384-229 chr3 80968252 80968463 + 2 NA Intergenic ALR/Alpha|Satellite|centr -25511 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 501-201 chr5 3237832 3238266 + 2 NA Intergenic Intergenic 60214 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 369-311 chr5 17739127 17739460 + 2 NA Intergenic Intergenic -67981 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 506-242 chr5 136600526 136600884 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -235229 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 351-251 chr2 218406268 218406512 + 2 NA TTS (NM_001206878) TTS (NM_001206878) 3744 NR_029500 407017 NR_029500 ENSG00000199121 MIR26B MIRN26B|hsa-mir-26b|miR-26b microRNA 26b ncRNA 431-55 chr11 50177403 50177743 + 2 NA Intergenic (TTATATA)n|Simple_repeat|Simple_repeat 120889 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 332-546 chr8 124131816 124132058 + 2 NA intron (NR_103547, intron 1 of 4) L1PA15|LINE|L1 39585 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 452-117 chr2 6115469 6115828 + 2 NA Intergenic Intergenic 133670 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 609-57 chr2 58479468 58479863 + 2 NA Intergenic Intergenic -41088 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 250-445 chr8 126217474 126217664 + 2 NA Intergenic Intergenic -107926 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 547-133 chr3 4103314 4103686 + 2 NA Intergenic Intergenic -199804 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 347-325 chr3 164939021 164939336 + 2 NA Intergenic Intergenic -107698 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 333-546 chr7 82696104 82696380 + 2 NA Intergenic MER41B|LTR|ERV1 -252286 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 530-200 chr5 67184108 67184461 + 2 NA exon (NM_005582, exon 3 of 3) exon (NM_005582, exon 3 of 3) 12515 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 300-19 chr1 164536775 164537019 + 2 NA Intergenic Intergenic -22463 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 386-331 chr7 89283465 89283799 + 2 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -487895 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 336-310 chr2 237556042 237556265 + 2 NA TTS (NM_001281474) TTS (NM_001281474) -10421 NM_015893 51052 Hs.247710 NM_015893 ENSG00000071677 PRLH PRH|PRRP prolactin releasing hormone protein-coding 586-110 chr4 37180748 37181155 + 2 NA Intergenic Intergenic 61040 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 214-245 chr4 124537043 124537203 + 2 NA intron (NR_110838, intron 4 of 8) L2a|LINE|L2 21311 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 371-342 chr6 93513617 93513837 + 2 NA Intergenic Intergenic -94145 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 372-406 chr5 82281061 82281287 + 2 NA intron (NM_001017971, intron 2 of 9) MIR|SINE|MIR 1712 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 230-125 chr15 67072757 67072935 + 2 NA intron (NM_005902, intron 1 of 8) intron (NM_005902, intron 1 of 8) 7244 NM_005902 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 305-361 chr3 139785770 139786021 + 2 NA Intergenic Intergenic -107845 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 363-84 chr11 81419079 81419335 + 2 NA Intergenic Intergenic 471629 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 368-67 chr10 120973833 120974072 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 122590 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 423-295 chr8 84539152 84539462 + 2 NA intron (NM_001354308, intron 3 of 9) MIR|SINE|MIR 123823 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 218-314 chr8 28278012 28278178 + 2 NA Intergenic L1MB3|LINE|L1 -39173 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 482-276 chr8 113494166 113494473 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -57380 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 119-61 chr8 121979775 121979851 + 2 NA Intergenic Intergenic -338373 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 232-218 chr20 46632879 46633060 + 2 NA intron (NM_001193340, intron 2 of 12) (TATC)n|Simple_repeat|Simple_repeat 18490 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 299-12 chr1 74019470 74019628 + 2 NA Intergenic Intergenic 178627 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 184-174 chr8 101667079 101667206 + 2 NA 3' UTR (NM_001330593, exon 16 of 16) 3' UTR (NM_001330593, exon 16 of 16) 123827 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 486-299 chr8 129391252 129391580 + 2 NA intron (NR_130918, intron 1 of 2) AluSx|SINE|Alu 92726 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 446-255 chr5 164773244 164773653 + 2 NA Intergenic Intergenic 303169 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 336-583 chr9 76321200 76321419 + 2 NA intron (NM_001190482, intron 29 of 36) intron (NM_001190482, intron 29 of 36) 73117 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 185-144 chr4 33588392 33588507 + 2 NA Intergenic Intergenic 451444 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 319-114 chr12 115574734 115574967 + 2 NA Intergenic LTR16B2|LTR|ERVL 573804 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 415-242 chr6 110478516 110478809 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -2049 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 191-223 chr9 26796230 26796369 + 2 NA Intergenic Intergenic 96503 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 373-226 chr2 205515399 205515678 + 2 NA intron (NM_205863, intron 20 of 21) L1PA14|LINE|L1 -166962 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 451-46 chr12 42812270 42812709 + 2 NA Intergenic Intergenic 120273 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 373-347 chr5 173748636 173748875 + 2 NA Intergenic Intergenic -2546 NR_108027 101928136 Hs.449267 NR_108027 ENSG00000253686 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 448-79 chr14 29089893 29090334 + 2 NA Intergenic Intergenic -304326 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 411-211 chr4 104683431 104683662 + 2 NA intron (NR_125926, intron 8 of 9) LTR16A2|LTR|ERVL -188652 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 150-80 chr4 72408268 72408359 + 2 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 160908 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 251-373 chr7 54595320 54595491 + 2 NA Intergenic L1MEh|LINE|L1 38435 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 422-92 chr15 27446599 27446971 + 2 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -285466 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 124-50 chr4 21364525 21364617 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -60665 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 268-299 chr4 178944098 178944308 + 2 NA Intergenic L1MEd|LINE|L1 -1036267 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 333-559 chr8 43838237 43838506 + 2 NA Intergenic ALR/Alpha|Satellite|centr 545929 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 223-13 chr1 118511398 118511551 + 2 NA Intergenic L1MA8|LINE|L1 -326246 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 360-247 chr2 179554327 179554625 + 2 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 8112 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 349-338 chr3 114224607 114224814 + 2 NA Intergenic Intergenic 12868 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 240-450 chrX 101982232 101982462 + 2 NA Intergenic L1ME4a|LINE|L1 -50320 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 520-129 chr18 61340792 61341174 + 2 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 7553 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 433-251 chr6 134611301 134611633 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -71462 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 245-265 chr4 153971773 153971978 + 2 NA Intergenic Intergenic -182792 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 251-328 chr6 17632501 17632726 + 2 NA intron (NM_005124, intron 17 of 21) intron (NM_005124, intron 17 of 21) 32311 NM_016255 51439 Hs.95260 NM_016255 ENSG00000137414 FAM8A1 AHCP family with sequence similarity 8 member A1 protein-coding 292-340 chr5 13308730 13308941 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -275949 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 320-433 chr5 38263570 38263821 + 2 NA intron (NM_152403, intron 1 of 21) L1ME1|LINE|L1 5136 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 504-179 chr4 457219 457560 + 2 NA intron (NM_133474, intron 2 of 2) L1M3a|LINE|L1 16820 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 291-483 chr8 141484368 141484637 + 2 NA intron (NR_102364, intron 6 of 26) L1ME2|LINE|L1 22727 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 401-74 chr13 68109074 68109438 + 2 NA Intergenic AluJb|SINE|Alu 736869 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 374-347 chr6 140184867 140185162 + 2 NA Intergenic L1PA16|LINE|L1 -20238 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 168-127 chr9 108155988 108156120 + 2 NA Intergenic Intergenic -666285 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 249-256 chr3 16725334 16725544 + 2 NA Intergenic Intergenic -120016 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 186-73 chr2 8209438 8209566 + 2 NA intron (NR_152741, intron 9 of 9) L1MDa|LINE|L1 118917 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 450-165 chr20 11958485 11958910 + 2 NA Intergenic Intergenic 40804 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 1000-29 chr9 105747714 105748632 + 2 NA exon (NM_018112, exon 5 of 6) exon (NM_018112, exon 5 of 6) 53632 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 178-157 chr8 141469031 141469168 + 2 NA intron (NR_102364, intron 16 of 26) (GGT)n|Simple_repeat|Simple_repeat 38130 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 389-13 chr1 103325860 103326147 + 2 NA Intergenic L1MA1|LINE|L1 199508 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 612-46 chr16 77018578 77019091 + 2 NA Intergenic L1MEi|LINE|L1 149898 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 312-30 chr10 14296580 14296869 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 34160 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 416-252 chr4 87916026 87916250 + 2 NA Intergenic Intergenic -59512 NM_000582 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 460-51 chr11 98287632 98287903 + 2 NA Intergenic L2c|LINE|L2 -733182 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 523-40 chr10 76502806 76503278 + 2 NA intron (NM_001305581, intron 6 of 6) L1PA16|LINE|L1 -385002 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 400-114 chr15 93737922 93738204 + 2 NA Intergenic L1PA13|LINE|L1 -118497 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 314-510 chr6 142428215 142428502 + 2 NA intron (NM_198569, intron 22 of 24) intron (NM_198569, intron 22 of 24) 126351 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 324-504 chr7 93065720 93065902 + 2 NA Intergenic L1MA5|LINE|L1 52168 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 251-210 chr21 27645049 27645220 + 2 NA Intergenic Intergenic -77245 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 523-292 chrX 84654089 84654456 + 2 NA Intergenic L1MA1|LINE|L1 -151819 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 464-220 chr6 132455845 132456188 + 2 NA non-coding (NR_137169, exon 9 of 9) non-coding (NR_137169, exon 9 of 9) -54541 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 246-250 chr3 26888966 26889179 + 2 NA Intergenic Intergenic 194515 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 291-370 chr5 154600610 154600765 + 2 NA Intergenic Intergenic -4615 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 352-164 chr15 86328733 86328995 + 2 NA intron (NM_152336, intron 17 of 24) L1PA15-16|LINE|L1 -11896 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 334-494 chr7 43304783 43305041 + 2 NA intron (NM_001287059, intron 2 of 27) L2a|LINE|L2 154017 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 272-5 chr1 46397217 46397422 + 2 NA intron (NM_001441, intron 1 of 14) intron (NM_001441, intron 1 of 14) 3002 NM_001441 2166 Hs.720143 NM_001441 ENSG00000117480 FAAH FAAH-1|PSAB fatty acid amide hydrolase protein-coding 278-447 chr9 22586378 22586590 + 2 NA Intergenic L1ME1|LINE|L1 -59716 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 285-375 chr6 156566608 156566860 + 2 NA Intergenic Intergenic 187984 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 375-352 chr6 62534405 62534661 + 2 NA Intergenic Intergenic -248306 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 199-99 chr2 16730497 16730633 + 2 NA Intergenic L1ME3D|LINE|L1 -64731 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 346-340 chr4 17775635 17775840 + 2 NA intron (NM_015688, intron 1 of 17) L1PB4|LINE|L1 5884 NM_015688 27146 Hs.744951 NM_015688 ENSG00000047662 FAM184B - family with sequence similarity 184 member B protein-coding 500-224 chr5 42318719 42319064 + 2 NA Intergenic Intergenic -104548 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 391-245 chr3 164744920 164745240 + 2 NA intron (NR_126405, intron 1 of 3) L1M4a1|LINE|L1 86400 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 485-53 chr12 58751042 58751480 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 30455 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 232-323 chr6 44992671 44992836 + 2 NA intron (NM_181356, intron 8 of 12) intron (NM_181356, intron 8 of 12) 205017 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 295-145 chr15 25721997 25722199 + 2 NA intron (NM_024490, intron 6 of 20) intron (NM_024490, intron 6 of 20) 126727 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 295-178 chr17 61433832 61434063 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -18475 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 183-131 chr6 51625649 51625776 + 2 NA intron (NM_138694, intron 66 of 66) intron (NM_138694, intron 66 of 66) 3842 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 206-279 chr9 11303270 11303453 + 2 NA Intergenic MER61-int|LTR|ERV1 690155 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 184-99 chr2 165650807 165650938 + 2 NA intron (NM_024969, intron 2 of 4) intron (NM_024969, intron 2 of 4) 78536 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 207-263 chr6 168679703 168679862 + 2 NA Intergenic L1PB1|LINE|L1 238598 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 534-241 chr7 106828046 106828575 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -36972 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 357-282 chr3 123378044 123378264 + 2 NA intron (NM_183357, intron 1 of 20) intron (NM_183357, intron 1 of 20) 38188 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 321-376 chr3 77379596 77379835 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 281703 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 172-35 chr14 57033063 57033180 + 2 NA Intergenic Intergenic 219963 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 357-395 chr6 131272494 131272795 + 2 NA intron (NM_138633, intron 2 of 2) L1ME1|LINE|L1 22240 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 287-32 chr1 221882891 221883059 + 2 NA Intergenic Intergenic -42309 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 190-116 chr3 24792646 24792756 + 2 NA Intergenic Intergenic -36622 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 253-193 chr2 116062900 116063088 + 2 NA Intergenic LTR41B|LTR|ERVL 719179 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 425-302 chr8 88726303 88726645 + 2 NA Intergenic Intergenic -398991 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 374-121 chr16 1059850 1060144 + 2 NA Intergenic AluSx1|SINE|Alu -12759 NM_001172560 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 474-286 chr8 86925070 86925412 + 2 NA intron (NM_173538, intron 3 of 10) intron (NM_173538, intron 3 of 10) 58826 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 338-436 chr5 68511933 68512108 + 2 NA Intergenic Intergenic 219443 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 251-348 chr6 132941579 132941755 + 2 NA Intergenic Intergenic 124448 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 322-423 chr5 44156991 44157247 + 2 NA Intergenic MER61-int|LTR|ERV1 -231613 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 185-136 chr3 67546149 67546284 + 2 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 108398 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 269-63 chr11 37700712 37700858 + 2 NA Intergenic Intergenic -237816 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 332-13 chr1 87995198 87995501 + 2 NA Intergenic L2c|LINE|L2 -623694 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 309-406 chr4 111763071 111763363 + 2 NA Intergenic L1M1|LINE|L1 -382237 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 317-451 chr7 41483174 41483455 + 2 NA Intergenic L1ME4a|LINE|L1 -210605 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 226-318 chr7 22285772 22285920 + 2 NA intron (NM_012294, intron 6 of 25) intron (NM_012294, intron 6 of 25) 71308 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 197-212 chr8 128130115 128130282 + 2 NA Intergenic Intergenic -19918 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 328-73 chr11 7285798 7286111 + 2 NA intron (NM_175733, intron 1 of 6) THE1C-int|LTR|ERVL-MaLR 34050 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 377-291 chr4 67215254 67215488 + 2 NA Intergenic HAL1|LINE|L1 206629 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 873-35 chr7 21373942 21374408 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -53908 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 293-382 chr6 148329055 148329280 + 2 NA intron (NM_001346505, intron 1 of 19) intron (NM_001346505, intron 1 of 19) -13671 NM_015278 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 481-35 chr10 65050714 65051142 + 2 NA Intergenic Intergenic -126410 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 290-181 chr18 21310398 21310597 + 2 NA intron (NM_001142966, intron 1 of 32) Charlie1b|DNA|hAT-Charlie 68255 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 616-107 chr3 78385455 78385915 + 2 NA Intergenic Intergenic -336722 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 250-118 chr14 45645870 45646117 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 69609 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 131-18 chr12 62858514 62858595 + 2 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 76596 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 325-42 chr1 232491906 232492152 + 2 NA intron (NM_020808, intron 2 of 20) MER3|DNA|hAT-Charlie 23579 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 265-356 chr7 34622496 34622713 + 2 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -35614 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 387-114 chr15 26780638 26780981 + 2 NA Intergenic L1MC4|LINE|L1 -7046 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 283-104 chr12 70034103 70034289 + 2 NA Intergenic L1MDa|LINE|L1 -208834 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 269-90 chr12 55252447 55252663 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 5267 NM_001005490 254783 Hs.554556 NM_001005490 ENSG00000197706 OR6C74 - olfactory receptor family 6 subfamily C member 74 protein-coding 243-23 chr1 193839831 193840019 + 2 NA Intergenic Intergenic 535180 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 327-309 chr21 29525783 29525992 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 29840 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 503-220 chr4 183771542 183771907 + 2 NA Intergenic Intergenic -26298 NR_132761 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 340-317 chr20 33239935 33240213 + 2 NA intron (NM_001243193, intron 4 of 8) MIRb|SINE|MIR 4078 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 346-75 chr11 84422294 84422501 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -105058 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 365-158 chr18 386352 386702 + 2 NA intron (NM_130386, intron 2 of 9) MER5A1|DNA|hAT-Charlie 114174 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 198-175 chr3 181445164 181445315 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -2753 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 283-194 chr18 40254365 40254555 + 2 NA Intergenic Intergenic 188174 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 470 chr1 9678214 9678545 + 2 NA intron (NR_126367, intron 1 of 1) AluJb|SINE|Alu 9195 NR_126368 101929074 Hs.661762 NR_126366 ENSG00000231789 PIK3CD-AS2 - PIK3CD antisense RNA 2 ncRNA 497-28 chr10 106013889 106014257 + 2 NA Intergenic L1M2|LINE|L1 -126092 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 357-153 chr17 51964837 51965107 + 2 NA intron (NM_001082533, intron 3 of 9) L1PA16|LINE|L1 193742 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 273-147 chr15 72941989 72942203 + 2 NA Intergenic Intergenic -110367 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 620-124 chr6 151531703 151532197 + 2 NA intron (NM_025059, intron 1 of 10) THE1C|LTR|ERVL-MaLR 37933 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 221-181 chr3 31313811 31313969 + 2 NA Intergenic L2b|LINE|L2 -152103 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 371-29 chr1 214115816 214116049 + 2 NA Intergenic Intergenic 127399 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 249-94 chr12 60805626 60805800 + 2 NA Intergenic Intergenic 1116343 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 339-36 chr1 182464224 182464556 + 2 NA intron (NM_001137669, intron 4 of 21) L1PA4|LINE|L1 14244 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 583-61 chr15 87017082 87017527 + 2 NA intron (NM_152336, intron 24 of 24) L1PA10|LINE|L1 -28878 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 334-259 chr2 59380279 59380481 + 2 NA Intergenic L1MA4A|LINE|L1 162672 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 346-25 chr1 165184582 165184769 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 171566 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 239-405 chr8 85877996 85878171 + 2 NA Intergenic MIR|SINE|MIR -50141 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 318-499 chr6 165028672 165028950 + 2 NA Intergenic Intergenic -206748 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 289-45 chr10 11691832 11691984 + 2 NA Intergenic Intergenic -50474 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 340-51 chr10 56716458 56716688 + 2 NA Intergenic Intergenic -355300 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 586-30 chr11 38336102 38336580 + 2 NA Intergenic Intergenic 310015 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 383-365 chr7 106281994 106282316 + 2 NA intron (NM_005746, intron 1 of 10) intron (NM_005746, intron 1 of 10) 2828 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 377-132 chr15 59788673 59789044 + 2 NA Intergenic Intergenic -99538 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 377-85 chr12 26794357 26794680 + 2 NA intron (NM_002223, intron 1 of 56) intron (NM_002223, intron 1 of 56) 38676 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 466-21 chr1 221127914 221128224 + 2 NA Intergenic L1PA16|LINE|L1 208227 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 503-68 chr12 39205866 39206273 + 2 NA Intergenic L1PA16|LINE|L1 237051 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 581-134 chr5 38744028 38744435 + 2 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -23958 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 463-309 chr9 89722553 89722971 + 2 NA Intergenic L1M4|LINE|L1 82979 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 255-403 chr7 137527193 137527410 + 2 NA intron (NM_001321710, intron 20 of 32) LTR106_Mam|LTR|LTR -183568 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 217-325 chr6 65590308 65590499 + 2 NA intron (NM_001292009, intron 2 of 43) L1MA6|LINE|L1 -10599 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 272-80 chr11 116342777 116342956 + 2 NA Intergenic L2a|LINE|L2 -296556 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 383-357 chr7 52882499 52882825 + 2 NA Intergenic Intergenic -152971 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 366-208 chr2 104709294 104709648 + 2 NA Intergenic Intergenic 48248 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 216-202 chr21 22633634 22633784 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -445575 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 351-331 chr4 18168585 18168889 + 2 NA Intergenic Intergenic -146862 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 373-284 chr4 42194618 42194855 + 2 NA Intergenic MLT2D|LTR|ERVL -42081 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 351-14 chr1 114078696 114078902 + 2 NA Intergenic Intergenic 73641 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 396-129 chr18 5257480 5257703 + 2 NA Intergenic LTR49|LTR|ERV1 19491 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 180-17 chr10 55088757 55088874 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -287524 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 264-84 chr11 134639272 134639510 + 2 NA Intergenic Intergenic -96554 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 390-66 chr12 22807054 22807399 + 2 NA Intergenic Intergenic 182055 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 577-79 chr18 24996868 24997201 + 2 NA Intergenic L2a|LINE|L2 -9055 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 363-448 chr8 104126707 104126918 + 2 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -96523 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 236-6 chr1 42862873 42863037 + 2 NA intron (NR_104171, intron 1 of 3) L1MCa|LINE|L1 5333 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 425-196 chr3 189519005 189519317 + 2 NA Intergenic L1M2a1|LINE|L1 -77585 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 389-204 chr20 24093125 24093389 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -104478 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 350-387 chr5 20483194 20483511 + 2 NA intron (NM_001349558, intron 1 of 15) L1MA3|LINE|L1 92361 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 189-176 chr6 50248345 50248502 + 2 NA Intergenic HERV16-int|LTR|ERVL -198494 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 268-386 chr8 10333148 10333332 + 2 NA intron (NM_001199729, intron 6 of 6) MER113A|DNA|hAT-Charlie -141325 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 570-33 chr10 111199099 111199661 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 85089 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 431-176 chr3 51850036 51850401 + 2 NA Intergenic LTR12|LTR|ERV1 -11397 NM_203424 389123 Hs.412294 NM_203424 ENSG00000184345 IQCF2 - IQ motif containing F2 protein-coding 329-87 chr11 14530389 14530617 + 2 NA intron (NM_148976, intron 2 of 10) L2c|LINE|L2 -10058 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 278-352 chr5 131562119 131562382 + 2 NA intron (NM_016340, intron 4 of 27) intron (NM_016340, intron 4 of 27) 72979 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 270-341 chr6 150033419 150033640 + 2 NA Intergenic Intergenic -7997 NM_130900 154064 Hs.558659 NM_130900 ENSG00000155918 RAET1L ULBP6 retinoic acid early transcript 1L protein-coding 230-153 chr18 8116678 8116872 + 2 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 250259 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 465-155 chr20 43326921 43327286 + 2 NA Intergenic Intergenic -130793 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 228-158 chr2 46819037 46819245 + 2 NA intron (NR_034099, intron 3 of 3) L2c|LINE|L2 2473 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 339-53 chr10 20730997 20731290 + 2 NA Intergenic AluJb|SINE|Alu 166459 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 226-309 chr6 104591141 104591322 + 2 NA Intergenic Intergenic 268315 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 270-333 chr6 61936291 61936489 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 349835 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 323-460 chr6 66049971 66050241 + 2 NA Intergenic Intergenic 262227 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 334-94 chr11 93536354 93536592 + 2 NA intron (NM_020179, intron 1 of 2) L1ME3G|LINE|L1 6918 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 488-101 chr17 9334666 9334995 + 2 NA intron (NM_004853, intron 7 of 7) intron (NM_004853, intron 7 of 7) -155712 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 216-239 chr3 190099149 190099289 + 2 NA intron (NM_001134418, intron 1 of 14) Charlie25|DNA|hAT-Charlie 21678 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 347-52 chr10 57331201 57331475 + 2 NA Intergenic Intergenic -26779 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 308-122 chr13 26164077 26164333 + 2 NA intron (NM_183045, intron 5 of 5) L1MEd|LINE|L1 57552 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 348-46 chr10 21772976 21773255 + 2 NA intron (NM_022365, intron 9 of 11) MSTA|LTR|ERVL-MaLR 230615 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 241-40 chr10 66827382 66827617 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -98537 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 226-10 chr1 75010814 75010981 + 2 NA Intergenic Intergenic -117537 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 450-28 chr10 22193013 22193286 + 2 NA Intergenic Intergenic 16834 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 357-389 chr6 67110036 67110258 + 2 NA Intergenic L1MA4|LINE|L1 -945204 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 356-516 chrX 63996495 63996680 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 209121 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 209-271 chr6 56021926 56022063 + 2 NA Intergenic Intergenic 69668 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 334-564 chr9 35842891 35843120 + 2 NA intron (NM_001042589, intron 7 of 13) L3|LINE|CR1 13777 NM_001363620 51754 Hs.9187 NM_016446 ENSG00000137103 TMEM8B C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6 transmembrane protein 8B protein-coding 421-27 chr10 61560945 61561285 + 2 NA Intergenic Intergenic 81074 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 216-283 chr5 102638774 102638943 + 2 NA intron (NR_103753, intron 1 of 2) intron (NR_103753, intron 1 of 2) 32606 NR_103754 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 625-57 chr2 196860277 196860742 + 2 NA intron (NM_001321099, intron 21 of 27) AluSz|SINE|Alu -50233 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 410-91 chr14 76582681 76582939 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -178658 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 257-47 chr10 84017683 84017879 + 2 NA Intergenic L1MEf|LINE|L1 -121728 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 322-325 chr3 59052375 59052588 + 2 NA Intergenic Intergenic -2449 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 292-347 chr5 45944911 45945142 + 2 NA Intergenic ALR/Alpha|Satellite|centr -248646 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 342-433 chr5 153509344 153509581 + 2 NA intron (NM_001258019, intron 2 of 14) intron (NM_001258019, intron 2 of 14) 17290 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 222-303 chr5 97737316 97737510 + 2 NA Intergenic Intergenic -103345 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 754-35 chr18 76597915 76598384 + 2 NA Intergenic L1ME3G|LINE|L1 -21628 NR_120419 400660 Hs.131718 NR_120419 ENSG00000266256 LINC00683 - long intergenic non-protein coding RNA 683 ncRNA 235-80 chr12 24095933 24096106 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -116402 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 322-57 chr10 43614691 43614873 + 2 NA intron (NM_145312, intron 4 of 4) L1ME3A|LINE|L1 8344 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 865-42 chr8 67708840 67709551 + 2 NA intron (NM_020361, intron 1 of 10) MER50|LTR|ERV1 37165 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 361-176 chr17 71268215 71268492 + 2 NA Intergenic L1MC3|LINE|L1 -66174 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 236-68 chr11 32632733 32632898 + 2 NA intron (NM_001008391, intron 14 of 17) L1MEc|LINE|L1 48984 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 423-278 chr7 98692501 98692772 + 2 NA Intergenic LTR8B|LTR|ERV1 75351 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 269-209 chr2 146536531 146536754 + 2 NA Intergenic Intergenic -50415 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 323-387 chr5 6318298 6318479 + 2 NA intron (NR_028351, intron 1 of 1) intron (NR_028351, intron 1 of 1) 18904 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 716-77 chr6 94603650 94604215 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 885629 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 177-21 chr10 59814296 59814399 + 2 NA intron (NM_005436, intron 4 of 8) intron (NM_005436, intron 4 of 8) -60892 NM_001304732 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 313-12 chr1 72947204 72947455 + 2 NA Intergenic Intergenic -358841 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 391-280 chr5 16432029 16432261 + 2 NA intron (NR_104625, intron 4 of 8) intron (NR_104625, intron 4 of 8) 8957 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 358-265 chr20 55674380 55674697 + 2 NA Intergenic AluSx|SINE|Alu -247341 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 272-326 chr5 5931382 5931526 + 2 NA Intergenic L2|LINE|L2 405838 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 392-115 chr17 70232071 70232429 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 62715 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 363-92 chr11 113651591 113651791 + 2 NA Intergenic Intergenic 54617 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 462-212 chr4 105118737 105119017 + 2 NA Intergenic Intergenic -26998 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 385-151 chr18 74670720 74671033 + 2 NA intron (NM_001146190, intron 2 of 3) AluJo|SINE|Alu 39913 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 649-11 chr11 38836390 38836897 + 2 NA Intergenic MIRc|SINE|MIR 187785 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 155-25 chr10 115045515 115045631 + 2 NA Intergenic Intergenic -47792 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 326-22 chr1 102354709 102354878 + 2 NA Intergenic Intergenic -357559 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 224-232 chr4 137933513 137933707 + 2 NA Intergenic Intergenic -155404 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 219-327 chr7 13937101 13937288 + 2 NA intron (NM_001370555, intron 6 of 12) intron (NM_001370555, intron 6 of 12) 49320 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 407-231 chr4 143011371 143011645 + 2 NA Intergenic L1MA5|LINE|L1 -164973 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 221-290 chr7 139542593 139542747 + 2 NA intron (NM_001080511, intron 4 of 4) intron (NM_001080511, intron 4 of 4) 18985 NM_001080511 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 329-181 chr15 38136337 38136593 + 2 NA Intergenic L1ME1|LINE|L1 -63475 NR_147199 107984773 Hs.285193 NR_147199 ENSG00000236914 LINC01852 - long intergenic non-protein coding RNA 1852 ncRNA 314-272 chr2 40258816 40259073 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 171360 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 464-37 chr11 114578654 114579009 + 2 NA intron (NM_017678, intron 5 of 5) MIR1_Amn|SINE|MIR 16955 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 245-320 chr7 15090626 15090832 + 2 NA Intergenic Intergenic -115871 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 465-308 chr8 139256485 139256784 + 2 NA Intergenic AluSx|SINE|Alu -342593 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 302-424 chr7 138337223 138337491 + 2 NA Intergenic HAL1|LINE|L1 -122902 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 497-160 chr20 63504769 63505139 + 2 NA Intergenic Intergenic -5871 NM_001958 1917 Hs.433839 NM_001958 ENSG00000101210 EEF1A2 EEF1AL|EF-1-alpha-2|EF1A|EIEE33|HS1|MRD38|STN|STNL eukaryotic translation elongation factor 1 alpha 2 protein-coding 611-153 chr8 131185280 131185732 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -144597 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 454-49 chr11 14593176 14593516 + 2 NA intron (NM_148976, intron 2 of 10) MER103C|DNA|hAT-Charlie 50288 NM_148976 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 286-475 chr9 35862807 35863068 + 2 NA 3' UTR (NM_001042590, exon 13 of 13) 3' UTR (NM_001042590, exon 13 of 13) 7464 NM_001004487 392309 Hs.527480 NM_001004487 ENSG00000168828 OR13J1 OR9-2 olfactory receptor family 13 subfamily J member 1 protein-coding 399-71 chr12 72445353 72445580 + 2 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -171957 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 231-319 chr6 162459689 162459867 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -267354 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 124-60 chr5 55499937 55500049 + 2 NA intron (NR_103485, intron 1 of 6) intron (NR_103485, intron 1 of 6) 8933 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 567-113 chr3 39835493 39835944 + 2 NA intron (NM_001284424, intron 1 of 15) L1PA7|LINE|L1 26058 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 584-57 chr18 8562221 8562659 + 2 NA Intergenic Intergenic -47005 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 294-480 chr8 129477370 129477611 + 2 NA intron (NR_130920, intron 1 of 3) A-rich|Low_complexity|Low_complexity 6652 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 321-291 chr2 108646582 108646817 + 2 NA intron (NM_001193484, intron 1 of 9) (GTTTT)n|Simple_repeat|Simple_repeat -8335 NM_001193485 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 576-187 chrX 67124680 67125069 + 2 NA Intergenic Intergenic -419147 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 336-485 chr6 50784844 50785069 + 2 NA Intergenic Intergenic -33915 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 227-125 chr16 58762385 58762562 + 2 NA Intergenic L1M4|LINE|L1 -28157 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 329-113 chr12 17849077 17849290 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 175884 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 336-213 chr17 58840611 58840850 + 2 NA intron (NM_014906, intron 1 of 6) L1MC3|LINE|L1 84861 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 388-136 chr17 71113124 71113330 + 2 NA intron (NR_104152, intron 3 of 3) (CA)n|Simple_repeat|Simple_repeat 88952 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 690-107 chr9 82077087 82077633 + 2 NA Intergenic Intergenic 88588 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 579-81 chr20 5914183 5914541 + 2 NA intron (NM_001819, intron 1 of 4) intron (NM_001819, intron 1 of 4) 2852 NM_001819 1114 Hs.516874 NM_001819 ENSG00000089199 CHGB SCG1 chromogranin B protein-coding 268-237 chr3 10917040 10917260 + 2 NA intron (NM_014229, intron 7 of 13) L3|LINE|CR1 -75584 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 354-246 chr2 200045609 200045861 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -90244 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 323-255 chr2 78652489 78652661 + 2 NA Intergenic L2a|LINE|L2 107044 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 303-506 chrX 77333748 77334010 + 2 NA Intergenic L1MC|LINE|L1 -113510 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 879-35 chrX 39906292 39906918 + 2 NA Intergenic Intergenic 69044 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 304-222 chr19 24361098 24361349 + 2 NA Intergenic ALR/Alpha|Satellite|centr -197776 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 534-246 chr8 10448172 10448546 + 2 NA Intergenic L1MEg|LINE|L1 -26206 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 429-66 chr12 22972934 22973275 + 2 NA Intergenic HAL1ME|LINE|L1 -202532 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 552-119 chr20 21959024 21959416 + 2 NA Intergenic L1M4|LINE|L1 -94870 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 288-248 chr22 43567563 43567828 + 2 NA intron (NM_198856, intron 24 of 29) MIR|SINE|MIR 51441 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 564-147 chr5 6454731 6455218 + 2 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 6115 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 328-97 chr12 14737916 14738140 + 2 NA Intergenic Intergenic 33103 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 186-128 chr5 40785047 40785190 + 2 NA intron (NM_001355028, intron 1 of 9) L2a|LINE|L2 13059 NM_001355029 5562 Hs.43322 NM_006251 ENSG00000132356 PRKAA1 AMPK|AMPKa1 protein kinase AMP-activated catalytic subunit alpha 1 protein-coding 374 chr1 42281300 42281567 + 2 NA intron (NM_001198850, intron 2 of 12) intron (NM_001198850, intron 2 of 12) 53522 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 196-12 chr1 95384419 95384564 + 2 NA Intergenic Intergenic -32384 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 181-12 chr10 21458487 21458636 + 2 NA Intergenic Intergenic 38080 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 490-70 chr12 46699127 46699543 + 2 NA Intergenic Intergenic 126662 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 303-4 chr1 75091592 75091839 + 2 NA Intergenic Intergenic -36719 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 303-275 chr3 6483034 6483298 + 2 NA Intergenic L1M4b|LINE|L1 322283 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 254-390 chr7 110794499 110794734 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -296390 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 273-24 chr1 175440476 175440725 + 2 NA intron (NM_003285, intron 2 of 22) L2a|LINE|L2 -247613 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 269-335 chr6 11556860 11557037 + 2 NA intron (NM_001100829, intron 1 of 2) L1MCc|LINE|L1 19199 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 929-27 chr5 32663651 32664336 + 2 NA Intergenic MER52-int|LTR|ERV1 -26879 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 299-185 chr19 12271018 12271232 + 2 NA TTS (NM_001164276) TTS (NM_001164276) 23487 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 446-253 chr5 157248323 157248704 + 2 NA intron (NM_005546, intron 15 of 16) MER102c|DNA|hAT-Charlie -17610 NM_001291721 26999 Hs.519702 NM_014376 ENSG00000055163 CYFIP2 EIEE65|PIR121 cytoplasmic FMR1 interacting protein 2 protein-coding 262-417 chr8 29704189 29704378 + 2 NA Intergenic HAL1|LINE|L1 43826 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 432-6 chr1 58309145 58309572 + 2 NA Intergenic Intergenic -58811 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 152-27 chr14 73645393 73645496 + 2 NA intron (NM_031427, intron 1 of 7) intron (NM_031427, intron 1 of 7) 458 NM_001201366 83544 Hs.271270 NM_031427 ENSG00000119661 DNAL1 C14orf168|CILD16|LC1 dynein axonemal light chain 1 protein-coding 246-419 chr8 126727226 126727388 + 2 NA Intergenic L1PA16|LINE|L1 -168829 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 616-85 chr2 83921588 83922161 + 2 NA Intergenic L1MC4|LINE|L1 -368808 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 547-226 chr7 112956352 112956745 + 2 NA non-coding (NR_110162, exon 5 of 6) non-coding (NR_110162, exon 5 of 6) -16673 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 271-347 chr5 60568308 60568468 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -72102 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 288-436 chr8 61043644 61043911 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -76029 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 529-222 chr8 127191851 127192234 + 2 NA intron (NR_120364, intron 1 of 2) intron (NR_120364, intron 1 of 2) 5585 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 220-294 chr5 105358373 105358527 + 2 NA Intergenic L1M4|LINE|L1 258976 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 337-374 chr3 180258633 180258836 + 2 NA Intergenic L1MA1|LINE|L1 -155439 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 235-56 chr10 126825755 126825947 + 2 NA Intergenic L1MA5A|LINE|L1 -79558 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 531-10 chr1 176733807 176734174 + 2 NA intron (NM_020318, intron 12 of 22) LTR16|LTR|ERVL 270815 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 332-198 chr17 52830875 52831141 + 2 NA Intergenic Intergenic -31113 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 373-98 chr12 126196101 126196297 + 2 NA Intergenic (AACA)n|Simple_repeat|Simple_repeat 100207 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 320-375 chr4 23974054 23974248 + 2 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -84104 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 244-134 chr18 45295422 45295555 + 2 NA intron (NM_001371319, intron 4 of 23) intron (NM_001371319, intron 4 of 23) 82493 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 330-275 chr2 90204334 90204585 + 2 NA Intergenic L1MDa|LINE|L1 -566552 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 367-193 chr2 48157480 48157812 + 2 NA Intergenic L1MA4|LINE|L1 -157036 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 905-22 chr22 49234028 49234599 + 2 NA Intergenic Intergenic 309153 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 463-76 chr13 26130724 26131029 + 2 NA Intergenic Intergenic -71354 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 298-202 chr2 29158623 29158806 + 2 NA intron (NR_109844, intron 10 of 13) intron (NR_109844, intron 10 of 13) 43299 NM_001287527 79745 Hs.122927 NM_024692 ENSG00000115295 CLIP4 RSNL2 CAP-Gly domain containing linker protein family member 4 protein-coding 418-235 chr6 55054052 55054332 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -52268 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 360-113 chr14 37451121 37451383 + 2 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 143997 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 118-66 chr9 36001933 36002014 + 2 NA Intergenic Intergenic -34940 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 488-264 chr8 34625441 34625864 + 2 NA Intergenic Intergenic -158269 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 673-30 chr13 43436174 43436813 + 2 NA intron (NM_001347963, intron 2 of 15) X7A_LINE|LINE|CR1 -12359 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 188-56 chr14 84428834 84428999 + 2 NA Intergenic Charlie17|DNA|hAT-Charlie -843016 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 281 chr1 27973456 27973615 + 2 NA 3' UTR (NM_001990, exon 18 of 18) 3' UTR (NM_001990, exon 18 of 18) 14073 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 202-97 chr17 69890246 69890413 + 2 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -71378 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 330-396 chr4 171780844 171781092 + 2 NA Intergenic AluSz6|SINE|Alu -32436 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 305-541 chr8 91314315 91314572 + 2 NA intron (NM_134266, intron 4 of 18) intron (NM_134266, intron 4 of 18) 65124 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 1299-4 chr3 108746647 108747558 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 10181 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 308-240 chr2 115678196 115678355 + 2 NA intron (NM_001321912, intron 6 of 25) THE1C-int|LTR|ERVL-MaLR 334460 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 327-198 chr17 61964318 61964574 + 2 NA intron (NM_005121, intron 20 of 29) AluJb|SINE|Alu -36464 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 466-100 chr17 14342049 14342430 + 2 NA intron (NR_130138, intron 1 of 2) intron (NR_130138, intron 1 of 2) 38499 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 702-15 chr11 64517614 64518301 + 2 NA Intergenic AluJb|SINE|Alu -37984 NM_001307985 55867 Hs.220844 NM_018484 ENSG00000168065 SLC22A11 OAT4|hOAT4 solute carrier family 22 member 11 protein-coding 311-48 chr10 31686516 31686711 + 2 NA Intergenic Intergenic 222313 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 356-435 chr6 139971658 139971867 + 2 NA Intergenic Intergenic -4557 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 319-464 chr6 88350013 88350313 + 2 NA Intergenic Intergenic -182814 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 378-294 chr3 191176363 191176552 + 2 NA Intergenic Intergenic -22784 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 328-44 chr1 246426637 246426904 + 2 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -9358 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 257-117 chr14 76982124 76982327 + 2 NA Intergenic L1MC4|LINE|L1 22587 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 333-348 chr3 59446055 59446350 + 2 NA Intergenic Intergenic 212295 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 268-31 chr10 19545688 19545875 + 2 NA intron (NM_001142308, intron 32 of 39) intron (NM_001142308, intron 32 of 39) 182769 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 322-44 chr1 223510658 223510844 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 117336 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 226-188 chr2 180208477 180208641 + 2 NA Intergenic L1PREC2|LINE|L1 -201262 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 781-24 chr16 64839935 64840392 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 281900 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 330-542 chr8 138564418 138564740 + 2 NA Intergenic LTR53B|LTR|ERVL -66849 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 439-117 chr18 69526502 69526854 + 2 NA intron (NM_152721, intron 1 of 7) L1MB8|LINE|L1 56747 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 288-319 chr5 21778879 21779118 + 2 NA intron (NM_004061, intron 11 of 14) intron (NM_004061, intron 11 of 14) -105456 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 278-119 chr14 70201224 70201418 + 2 NA intron (NR_135825, intron 2 of 3) L1ME3A|LINE|L1 -12251 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 261-174 chr2 27970760 27970940 + 2 NA intron (NM_199193, intron 4 of 13) L1MC5|LINE|L1 -25517 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 260-31 chr1 231931550 231931757 + 2 NA intron (NR_126441, intron 1 of 3) AluJr|SINE|Alu 5819 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 463-187 chr3 77549178 77549570 + 2 NA intron (NM_001290039, intron 8 of 26) intron (NM_001290039, intron 8 of 26) 451362 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 341-153 chr14 80606833 80607036 + 2 NA intron (NM_152446, intron 19 of 24) L2a|LINE|L2 334804 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 377-439 chrX 94214022 94214384 + 2 NA Intergenic Intergenic 539997 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 250-337 chr5 37908873 37909083 + 2 NA Intergenic Intergenic -39513 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 349-394 chr4 167973494 167973714 + 2 NA Intergenic L1PA13|LINE|L1 -118933 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 378-315 chr4 107703863 107704171 + 2 NA intron (NM_005443, intron 1 of 11) L1MA8|LINE|L1 16217 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 514-88 chr14 63719436 63719795 + 2 NA intron (NM_030791, intron 1 of 2).2 intron (NM_030791, intron 1 of 2).2 8450 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 302-361 chr5 155304784 155305003 + 2 NA Intergenic MIR|SINE|MIR 291138 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 527-281 chr9 76830441 76830741 + 2 NA intron (NM_001308048, intron 4 of 17) AluSx1|SINE|Alu 66155 NR_132313 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 277-280 chr4 4987409 4987639 + 2 NA intron (NR_125893, intron 2 of 2) intron (NR_125893, intron 2 of 2) 31934 NM_018659 54360 Hs.13872 NM_018659 ENSG00000170891 CYTL1 C17|C4orf4 cytokine like 1 protein-coding 275-120 chr15 67796023 67796216 + 2 NA intron (NM_001206804, intron 21 of 21) L1MEd|LINE|L1 -29390 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 490-71 chr12 47004099 47004443 + 2 NA Intergenic Intergenic -75332 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 367-209 chr2 100167340 100167562 + 2 NA Intergenic L1ME3A|LINE|L1 -24861 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 187-110 chr3 89123919 89124054 + 2 NA intron (NM_182644, intron 1 of 6) intron (NM_182644, intron 1 of 6) 16365 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 423-23 chr10 42361979 42362280 + 2 NA intron (NR_024380, intron 1 of 2) intron (NR_024380, intron 1 of 2) 5916 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 470-60 chr13 44104883 44105323 + 2 NA TTS (NR_132368) TTS (NR_132368) -5446 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 401-75 chr13 68635016 68635411 + 2 NA Intergenic L1MEf|LINE|L1 250112 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 422-315 chr9 103353519 103353808 + 2 NA Intergenic L1MEc|LINE|L1 -28630 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 472-284 chr6 138438462 138438861 + 2 NA intron (NM_020464, intron 4 of 6) intron (NM_020464, intron 4 of 6) -3367 NR_036099 100423001 NR_036099 ENSG00000266555 MIR3145 mir-3145 microRNA 3145 ncRNA 369-220 chr2 173370868 173371053 + 2 NA Intergenic Intergenic 16088 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 478-18 chr1 225280858 225281182 + 2 NA intron (NM_001367479, intron 54 of 85) L1M4a2|LINE|L1 147018 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 302-194 chr2 5915771 5915991 + 2 NA Intergenic Intergenic -16806 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 164-19 chr11 86474932 86475035 + 2 NA intron (NM_001014811, intron 6 of 13) (AATA)n|Simple_repeat|Simple_repeat 100096 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 203-76 chr15 59963544 59963742 + 2 NA Intergenic L1ME1|LINE|L1 -40668 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 287-15 chr1 80899941 80900151 + 2 NA Intergenic AluSx|SINE|Alu 258759 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 338-513 chr7 94317131 94317386 + 2 NA Intergenic Intergenic 74934 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 350-82 chr11 130845116 130845386 + 2 NA intron (NR_125383, intron 5 of 5) L1ME3G|LINE|L1 16859 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 294-292 chr3 44273664 44273867 + 2 NA intron (NM_001145030, intron 8 of 19) L2c|LINE|L2 31879 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 188-212 chr9 559750 559916 + 2 NA intron (NM_001256877, intron 2 of 12) intron (NM_001256877, intron 2 of 12) 55278 NM_001354333 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 153-97 chr8 61883645 61883736 + 2 NA Intergenic Intergenic -6149 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 360-471 chr8 117427959 117428289 + 2 NA Intergenic L1PA10|LINE|L1 -92589 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 336-95 chr11 50681831 50682070 + 2 NA Intergenic ALR/Alpha|Satellite|centr 272803 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 689-73 chr4 175842153 175842621 + 2 NA intron (NR_048571, intron 1 of 5) MIRc|SINE|MIR -29273 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 220-250 chr4 32594383 32594534 + 2 NA Intergenic Intergenic 243420 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 507-132 chr2 112012759 112013149 + 2 NA intron (NM_006343, intron 15 of 18) intron (NM_006343, intron 15 of 18) -42315 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 341-404 chr4 152147703 152147915 + 2 NA Intergenic Intergenic 46991 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 525-6 chr1 80316794 80317242 + 2 NA Intergenic Intergenic -218737 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 339-254 chr2 56743865 56744160 + 2 NA Intergenic Intergenic -558242 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 278-430 chr8 122814233 122814430 + 2 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 32676 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 556-173 chr5 22620447 22620919 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 232661 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 465-64 chr12 46893078 46893447 + 2 NA Intergenic Intergenic -67265 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 367-27 chr1 171538161 171538376 + 2 NA intron (NM_015172, intron 15 of 33) AluJb|SINE|Alu 52738 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 285-27 chr10 14653686 14653863 + 2 NA intron (NM_001282695, intron 2 of 5) intron (NM_001282695, intron 2 of 5) -49373 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 185-32 chr10 116887192 116887330 + 2 NA intron (NM_018330, intron 14 of 14) intron (NM_018330, intron 14 of 14) -37539 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 162-125 chr7 111779206 111779358 + 2 NA intron (NM_001363540, intron 35 of 52) intron (NM_001363540, intron 35 of 52) -29223 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 257-63 chr11 79713034 79713191 + 2 NA Intergenic L1PA15|LINE|L1 -272082 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 145-36 chr17 63249405 63249496 + 2 NA intron (NM_025185, intron 7 of 25) intron (NM_025185, intron 7 of 25) 190817 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 165-127 chr8 48364657 48364796 + 2 NA Intergenic L1MD2|LINE|L1 -186841 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 291-257 chr20 19474899 19475167 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -190437 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 314-64 chr10 45003216 45003476 + 2 NA 5' UTR (NM_006963, exon 2 of 2) 5' UTR (NM_006963, exon 2 of 2) 2423 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 505-328 chr9 136315306 136315641 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -8572 NM_001291516 399693 Hs.530383 NM_001291516 ENSG00000260220 CCDC187 - coiled-coil domain containing 187 protein-coding 283-6 chr1 45161987 45162142 + 2 NA intron (NM_020883, intron 1 of 13) L2|LINE|L2 44541 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 339-66 chr10 66959889 66960150 + 2 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 33983 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 478-188 chr3 79394228 79394689 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -17269 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 199-17 chr1 232865023 232865176 + 2 NA Intergenic L1ME4a|LINE|L1 60207 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 309-276 chr2 145522817 145523122 + 2 NA Intergenic Intergenic 855002 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 249-7 chr1 60436911 60437129 + 2 NA Intergenic LTR8|LTR|ERV1 185665 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 489-229 chr6 120731159 120731547 + 2 NA Intergenic L1ME3A|LINE|L1 603127 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 273-109 chr12 108088661 108088917 + 2 NA Intergenic L1MC3|LINE|L1 -40499 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 347-435 chr6 98674338 98674634 + 2 NA Intergenic Intergenic 157214 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 186-111 chr3 109987521 109987658 + 2 NA Intergenic Intergenic 384761 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 284-181 chr19 33705150 33705313 + 2 NA intron (NM_001127895, intron 3 of 4) intron (NM_001127895, intron 3 of 4) 20703 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 212-313 chr7 134975450 134975643 + 2 NA Intergenic LTR72B|LTR|ERV1 -10962 NM_001367812 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 316-49 chr1 245782170 245782439 + 2 NA intron (NM_022743, intron 10 of 11) intron (NM_022743, intron 10 of 11) -547787 NR_151721 111216275 Hs.663694 NR_151721 ENSG00000232192 KIF26B-AS1 - KIF26B antisense RNA 1 ncRNA 357-165 chr18 11263393 11263701 + 2 NA Intergenic PABL_B|LTR|ERV1 -114785 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 425-212 chr4 116042882 116043171 + 2 NA Intergenic Intergenic -256699 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 384-238 chr3 147632880 147633198 + 2 NA Intergenic Intergenic 211712 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 333-292 chr2 238853642 238853892 + 2 NA intron (NM_001271893, intron 1 of 1) intron (NM_001271893, intron 1 of 1) 5682 NM_057179 117581 Hs.422585 NM_057179 ENSG00000233608 TWIST2 AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39 twist family bHLH transcription factor 2 protein-coding 809-27 chr2 166600902 166601483 + 2 NA Intergenic L1MA3|LINE|L1 -114221 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 335-320 chr21_GL383580v2_alt 65398 65701 + 2 NA Intergenic AluJr|SINE|Alu -20939 NM_019596 56245 Hs.517235 NM_019596 ENSG00000205929 C21orf62 B37|C21orf120|PRED81 chromosome 21 open reading frame 62 protein-coding 367-318 chr4 30440970 30441261 + 2 NA Intergenic Intergenic -279254 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 303-270 chr22 21107998 21108249 + 2 NA intron (NR_037566, intron 1 of 5) intron (NR_037566, intron 1 of 5) 5107 NR_037566 400892 Hs.745077 NM_207474 BCRP2 BCR-2|BCR2|BCRL2 BCR pseudogene 2 pseudo 259-11 chr1 78722227 78722417 + 2 NA Intergenic Intergenic 72491 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 152-102 chrX 55223599 55223719 + 2 NA intron (NM_001013435, intron 4 of 4) intron (NM_001013435, intron 4 of 4) 3313 NM_001013435 90737 Hs.668491 NM_130467 ENSG00000158639 PAGE5 CT16|CT16.1|CT16.2|GAGEE1|PAGE-5 PAGE family member 5 protein-coding 172-68 chr2 205180224 205180363 + 2 NA intron (NM_205863, intron 13 of 21) intron (NM_205863, intron 13 of 21) -502207 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 350-35 chr1 227946105 227946445 + 2 NA intron (NM_003395, intron 1 of 3) intron (NM_003395, intron 1 of 3) 1657 NM_003395 7483 Hs.149504 NM_003395 ENSG00000143816 WNT9A WNT14 Wnt family member 9A protein-coding 262-129 chr14 72505635 72505845 + 2 NA intron (NM_001370280, intron 13 of 17) MIRb|SINE|MIR -11080 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 210-236 chr5 156781413 156781579 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -68799 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 195-56 chr13 22296776 22296943 + 2 NA Intergenic Intergenic 86574 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 363-67 chr10 121193824 121194039 + 2 NA Intergenic L2c|LINE|L2 337383 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 198-117 chr2 35091755 35091920 + 2 NA Intergenic MIRb|SINE|MIR -379568 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 429-89 chr14 55498754 55498990 + 2 NA Intergenic Intergenic -58327 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 245-172 chr19 6909996 6910146 + 2 NA intron (NM_001974, intron 10 of 20) MamRep1151|LTR?|LTR? 22492 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 315-179 chr16 83505685 83505866 + 2 NA intron (NM_001220489, intron 6 of 12) AluSp|SINE|Alu -2571 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 453-196 chr5 9569940 9570371 + 2 NA Intergenic L2a|LINE|L2 21328 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 718-91 chr8 78751807 78752353 + 2 NA intron (NM_001199886, intron 2 of 4) L1MA5|LINE|L1 -27706 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 365-196 chr2 99779871 99780094 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -289965 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 361-12 chr1 91150053 91150281 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -127912 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 377-306 chr5 12273788 12274135 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -300896 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 379-387 chr9 138085990 138086220 + 2 NA intron (NM_001243812, intron 35 of 45) L1MA5|LINE|L1 -41034 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 448-29 chr10 25138382 25138766 + 2 NA intron (NR_120649, intron 6 of 7) L1PA5|LINE|L1 25516 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 453-277 chr8 75441683 75442052 + 2 NA intron (NM_001330561, intron 1 of 11) L1ME3D|LINE|L1 34218 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 417-248 chr6 139334410 139334712 + 2 NA Intergenic Intergenic 39652 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 322-39 chr1 210807692 210807966 + 2 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 325545 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 472-175 chr2 201400160 201400595 + 2 NA intron (NM_015049, intron 4 of 15) Helitron3Na_Mam|RC|Helitron -42979 NM_139163 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 481-316 chr9 85931762 85932212 + 2 NA Intergenic AluJo|SINE|Alu -9155 NM_001321881 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 259-278 chr4 35939693 35939920 + 2 NA Intergenic Intergenic 304133 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 191-26 chr10 85848078 85848226 + 2 NA intron (NM_017551, intron 8 of 15) L1ME4a|LINE|L1 270421 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 222-22 chr1 215222810 215222972 + 2 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 140154 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 410-3 chr1 73075118 73075364 + 2 NA Intergenic L1PA14|LINE|L1 -230929 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 455-228 chr5 97168058 97168475 + 2 NA intron (NM_018343, intron 7 of 9) intron (NM_018343, intron 7 of 9) 14981 NM_001159749 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 552-118 chr20 12272469 12272908 + 2 NA Intergenic L1PA11|LINE|L1 354795 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 272-200 chr2 98527088 98527272 + 2 NA intron (NM_001351428, intron 4 of 24) L1MB7|LINE|L1 81170 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 260-80 chr11 73181363 73181598 + 2 NA Intergenic Intergenic -36801 NM_002564 5029 Hs.339 NM_002564 ENSG00000175591 P2RY2 HP2U|P2RU1|P2U|P2U1|P2UR|P2Y2|P2Y2R purinergic receptor P2Y2 protein-coding 286-190 chr2 20077901 20078082 + 2 NA Intergenic L1MC|LINE|L1 -26363 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 325-429 chr5 15088221 15088519 + 2 NA Intergenic L2a|LINE|L2 178190 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 518-91 chr15 71900982 71901410 + 2 NA exon (NM_006901, exon 23 of 42) exon (NM_006901, exon 23 of 42) 90642 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 319-308 chr21 44583701 44583885 + 2 NA intron (NM_144991, intron 1 of 11) L1MA9|LINE|L1 -3189 NM_198694 386680 Hs.688629 NM_198694 ENSG00000241123 KRTAP10-5 KAP10.5|KAP18-5|KAP18.5|KRTAP10.5|KRTAP18-5|KRTAP18.1|KRTAP18.5 keratin associated protein 10-5 protein-coding 575-171 chr6 65641043 65641587 + 2 NA intron (NM_001292009, intron 1 of 43) LTR33C|LTR|ERVL -61511 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 298-297 chr3 77953615 77953770 + 2 NA Intergenic Intergenic 95271 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 462-276 chr8 49510655 49510951 + 2 NA intron (NR_134294, intron 1 of 1) L1MB3|LINE|L1 1377 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 351-199 chr19 44176282 44176497 + 2 NA TTS (NM_001146220) TTS (NM_001146220) 11225 NM_001032372 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 309-305 chr20 43805564 43805798 + 2 NA Intergenic L1MB7|LINE|L1 -78679 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 147-86 chr9 27007368 27007465 + 2 NA intron (NM_001099224, intron 8 of 13) intron (NM_001099224, intron 8 of 13) -1744 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 378-439 chr8 109208168 109208492 + 2 NA Intergenic Intergenic 121603 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 191-205 chr8 29931829 29931956 + 2 NA intron (NR_024473, intron 2 of 2) L1MCc|LINE|L1 10379 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 656-109 chr6 47711967 47712576 + 2 NA intron (NM_001347855, intron 4 of 9) intron (NM_001347855, intron 4 of 9) 13691 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 325-571 chr9 31179645 31179869 + 2 NA Intergenic Intergenic 201733 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 416-290 chr6 50611039 50611420 + 2 NA Intergenic Intergenic -102315 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 498-9 chr1 153214441 153214903 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -2912 NM_001195571 574414 Hs.135098 NM_001195571 ENSG00000203783 PRR9 - proline rich 9 protein-coding 220-296 chr5 105449342 105449559 + 2 NA Intergenic Intergenic 349976 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 270-342 chr6 157707965 157708203 + 2 NA Intergenic LTR8A|LTR|ERV1 -115162 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 327-257 chr2 51666937 51667194 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 634464 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 349-462 chr6 148617043 148617344 + 2 NA Intergenic Intergenic 108042 NM_001346509 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 258-178 chr2 21816326 21816501 + 2 NA Intergenic Intergenic -105761 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 468-108 chr17 17609231 17609641 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -17728 NM_148172 10400 Hs.714193 NM_007169 ENSG00000133027 PEMT PEAMT|PEMPT|PEMT2|PLMT|PNMT phosphatidylethanolamine N-methyltransferase protein-coding 313-376 chr4 35060363 35060622 + 2 NA Intergenic Intergenic -790745 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 228-178 chr2 141979336 141979501 + 2 NA intron (NM_018557, intron 1 of 90) L3|LINE|CR1 152283 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 762-17 chr12 45201705 45202300 + 2 NA intron (NR_037144, intron 1 of 2) intron (NR_037144, intron 1 of 2) 14004 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 204-32 chr10 121987176 121987362 + 2 NA Intergenic LTR8B|LTR|ERV1 -1894 NM_001291876 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 348-162 chr15 97560938 97561112 + 2 NA promoter-TSS (NR_110756) promoter-TSS (NR_110756) -327 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 312-495 chr7 108137839 108138111 + 2 NA Intergenic Intergenic -7614 NM_001318048 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 212-253 chr5 27644913 27645095 + 2 NA Intergenic Intergenic 172712 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 232-55 chr11 30978301 30978502 + 2 NA intron (NM_001367979, intron 20 of 38) L2a|LINE|L2 14285 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 458-254 chr8 82587438 82587796 + 2 NA Intergenic L1MA4A|LINE|L1 -324487 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 291-13 chr1 97507136 97507340 + 2 NA intron (NM_000110, intron 13 of 22) intron (NM_000110, intron 13 of 22) -289683 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 629-3 chr1 60629674 60630019 + 2 NA Intergenic L1ME1|LINE|L1 -7161 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 217-175 chr2 97778698 97778862 + 2 NA intron (NM_015348, intron 31 of 40) L2b|LINE|L2 44374 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 299-230 chr2 149461144 149461376 + 2 NA intron (NM_194317, intron 3 of 4) L1MD1|LINE|L1 -126098 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 422-99 chr15 81394294 81394692 + 2 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -20280 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 411-229 chr5 53041312 53041649 + 2 NA intron (NR_073106, intron 2 of 29) MIR|SINE|MIR 52128 NR_073107 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 297-261 chr20 17459283 17459570 + 2 NA intron (NM_002594, intron 10 of 11) L1ME3A|LINE|L1 71953 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 341-509 chr7 149529493 149529686 + 2 NA Intergenic LTR25-int|LTR|ERV1 -31780 NM_001363517 155061 Hs.24643 NM_152557 ENSG00000181220 ZNF746 PARIS zinc finger protein 746 protein-coding 574-19 chr11 15528397 15528788 + 2 NA Intergenic L1MA6|LINE|L1 -115293 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 236-45 chr10 64575444 64575602 + 2 NA Intergenic Intergenic -250005 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 411-10 chr1 176435771 176436111 + 2 NA Intergenic Intergenic -27234 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 242-17 chr1 152211802 152211990 + 2 NA TTS (NM_001009931) TTS (NM_001009931) 12300 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 299-435 chr7 144980046 144980315 + 2 NA Intergenic Intergenic -144127 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 439-237 chr5 155768702 155769042 + 2 NA Intergenic Intergenic -557885 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 297-210 chr2 47292669 47292935 + 2 NA intron (NR_110207, intron 1 of 2) LTR37-int|LTR|ERV1 -42513 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 234-185 chr2 128709714 128709867 + 2 NA Intergenic L1M4b|LINE|L1 -154810 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 407-33 chr10 66978574 66978863 + 2 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 33435 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 228-41 chr10 82533720 82533895 + 2 NA intron (NR_163253, intron 3 of 10) L1M3|LINE|L1 -300887 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 248-387 chr7 106163878 106164055 + 2 NA Intergenic L1MEd|LINE|L1 -51390 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 243-279 chr3 65105129 65105298 + 2 NA Intergenic LTR82B|LTR|ERVL -417213 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 240-22 chr1 192236731 192236904 + 2 NA Intergenic Intergenic 78355 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 295-266 chr21 24622547 24622798 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 193932 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 233-285 chr5 13217666 13217838 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -184866 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 385-270 chr4 65983531 65983907 + 2 NA Intergenic Intergenic -293105 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 244-361 chr8 48139387 48139572 + 2 NA Intergenic L1M2|LINE|L1 131048 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 557-28 chr11 8550039 8550563 + 2 NA intron (NM_030906, intron 1 of 13) L1MA4|LINE|L1 43675 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 339-25 chr1 152524996 152525205 + 2 NA Intergenic Intergenic 10618 NM_019060 54544 Hs.110196 NM_019060 ENSG00000169509 CRCT1 C1orf42|NICE-1|NICE1 cysteine rich C-terminal 1 protein-coding 411-136 chr2 12748975 12749221 + 2 NA Intergenic L1MEc|LINE|L1 11731 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 337-84 chr11 38511962 38512139 + 2 NA Intergenic L1MB3|LINE|L1 134306 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 441-252 chr7 108932196 108932552 + 2 NA Intergenic L1M1|LINE|L1 -47787 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 310-204 chr18 55873921 55874198 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 46140 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 315-498 chr8 134173620 134173815 + 2 NA Intergenic L1MEb|LINE|L1 287221 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 306-551 chr9 96833930 96834114 + 2 NA intron (NM_001346995, intron 2 of 3) MSTA1|LTR|ERVL-MaLR 20492 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 244-177 chr2 146002518 146002752 + 2 NA Intergenic Intergenic -584422 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 309-180 chr15 85611850 85612117 + 2 NA intron (NM_007200, intron 8 of 36) intron (NM_007200, intron 8 of 36) -7967 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 316-182 chr15 46423392 46423618 + 2 NA Intergenic L1ME2|LINE|L1 718310 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 428-209 chr4 66737583 66738006 + 2 NA Intergenic Intergenic 460970 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 211-231 chr5 41296938 41297099 + 2 NA Intergenic Intergenic -35549 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 170-52 chr15 24753448 24753591 + 2 NA Intergenic Intergenic -70089 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 397-300 chr7 31543548 31543821 + 2 NA intron (NM_001257968, intron 1 of 14) L1MC1|LINE|L1 -9318 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 365-77 chr11 95280242 95280466 + 2 NA Intergenic Intergenic -47879 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 345-181 chr15 95236341 95236614 + 2 NA Intergenic Intergenic 90623 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 343-4 chr1 18812218 18812512 + 2 NA Intergenic Intergenic 47296 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 232-77 chr12 26681011 26681239 + 2 NA intron (NM_002223, intron 13 of 56) MIRb|SINE|MIR 152069 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 361-292 chr3 102650649 102650926 + 2 NA Intergenic Intergenic 215772 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 274-423 chrX 106554579 106554761 + 2 NA Intergenic L1MA2|LINE|L1 -57260 NM_001184782 55086 Hs.274267 NM_018015 ENSG00000147231 RADX CXorf57 RPA1 related single stranded DNA binding protein, X-linked protein-coding 250-214 chr2 104267820 104268016 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 140414 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 290-447 chr8 86852573 86852850 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -13704 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 487-153 chr2 174174107 174174436 + 2 NA intron (NM_001011708, intron 3 of 9) L1ME1|LINE|L1 74261 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 243-100 chr12 82130639 82130799 + 2 NA Intergenic L1MB7|LINE|L1 177000 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 409-135 chr2 23588283 23588661 + 2 NA intron (NM_052920, intron 3 of 13) intron (NM_052920, intron 3 of 13) 203293 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 735-53 chr22 27335076 27335665 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 24719 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 497-176 chr3 61488908 61489240 + 2 NA Intergenic L2b|LINE|L2 -72497 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 482-112 chr19 2846934 2847382 + 2 NA intron (NM_152791, intron 1 of 3) MER68-int|LTR|ERVL 5683 NM_152791 148254 Hs.47712 NM_152791 ENSG00000186300 ZNF555 - zinc finger protein 555 protein-coding 326-456 chr6 63140511 63140690 + 2 NA Intergenic L1M1|LINE|L1 179377 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 245-96 chr12 44656738 44656885 + 2 NA intron (NM_006159, intron 14 of 20) intron (NM_006159, intron 14 of 20) 218850 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 363-75 chr11 15814635 15814964 + 2 NA Intergenic Intergenic 154822 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 352-544 chr8 131404666 131404900 + 2 NA Intergenic MER92B|LTR|ERV1 -363874 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 421-239 chr5 59301292 59301643 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -25352 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 292-304 chr4 7115062 7115214 + 2 NA Intergenic AluSx1|SINE|Alu -11762 NR_027441 730971 Hs.591718 NR_027441 LINC02447 - long intergenic non-protein coding RNA 2447 ncRNA 363-36 chr10 3041880 3042194 + 2 NA Intergenic L1ME1|LINE|L1 24896 NR_160682 101927824 NR_160681 LOC101927824 - uncharacterized LOC101927824 ncRNA 235-159 chr2 27097107 27097316 + 2 NA intron (NM_000221, intron 4 of 7) MIR3|SINE|MIR 10439 NM_006488 3795 Hs.567297 NM_000221 ENSG00000138030 KHK - ketohexokinase protein-coding 296-336 chr4 53000944 53001109 + 2 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 138709 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 410-121 chr2 4684229 4684518 + 2 NA Intergenic Intergenic -28151 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 202-189 chr4 74955958 74956146 + 2 NA TTS (NR_121617) TTS (NR_121617) 14310 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 414-64 chr12 30574545 30574882 + 2 NA Intergenic Intergenic 102531 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 303-89 chr12 25773159 25773379 + 2 NA Intergenic AluSz6|SINE|Alu 100810 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 192-117 chr20 19702023 19702182 + 2 NA intron (NM_020689, intron 15 of 16) intron (NM_020689, intron 15 of 16) -184419 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 530-121 chr2 51334310 51334703 + 2 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 301905 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 396-320 chr7 3342393 3342730 + 2 NA intron (NM_152744, intron 1 of 44) AluSp|SINE|Alu 41309 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 578-39 chr11 81578359 81578833 + 2 NA Intergenic MLT2B3|LTR|ERVL 312240 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 305-28 chr1 114131025 114131244 + 2 NA intron (NM_001366223, intron 3 of 7) intron (NM_001366223, intron 3 of 7) 21306 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 258-177 chr19 51859984 51860188 + 2 NA intron (NM_001370456, intron 5 of 5) intron (NM_001370456, intron 5 of 5) 27850 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 424-91 chr16 60138013 60138370 + 2 NA Intergenic L1PA17|LINE|L1 221602 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 502-152 chr2 221219396 221219809 + 2 NA Intergenic Intergenic 352702 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 338-168 chr14 72381417 72381676 + 2 NA intron (NM_001370288, intron 3 of 16) L1ME3D|LINE|L1 -135274 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 596-102 chr2 142775152 142775643 + 2 NA Intergenic L1MA2|LINE|L1 -102267 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 263-323 chr5 41213543 41213797 + 2 NA promoter-TSS (NM_000065) promoter-TSS (NM_000065) -138 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 460-111 chr18 2797220 2797537 + 2 NA intron (NM_015295, intron 47 of 47) intron (NM_015295, intron 47 of 47) -49628 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 408-197 chr21 37977848 37978129 + 2 NA Intergenic L1ME2|LINE|L1 -61531 NM_002240 3763 Hs.626242 NM_002240 ENSG00000157542 KCNJ6 BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2 potassium voltage-gated channel subfamily J member 6 protein-coding 322-319 chr3 17149816 17149996 + 2 NA Intergenic Intergenic 216710 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 220-254 chr4 51995609 51995763 + 2 NA exon (NM_001024611, exon 5 of 5) exon (NM_001024611, exon 5 of 5) 24677 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 270-358 chr7 42740732 42740951 + 2 NA Intergenic Intergenic -34394 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 280-144 chr16 7452516 7452662 + 2 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 119744 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 273-483 chrX 87846809 87846975 + 2 NA Intergenic Intergenic 329090 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 269-42 chr10 30337616 30337868 + 2 NA intron (NM_018109, intron 3 of 8) intron (NM_018109, intron 3 of 8) 11596 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 218-326 chr8 88964167 88964341 + 2 NA Intergenic Intergenic -636771 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 174-51 chr16 86251269 86251407 + 2 NA intron (NR_104139, intron 3 of 5) intron (NR_104139, intron 3 of 5) 34909 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 511-231 chr6 81181305 81181782 + 2 NA Intergenic Intergenic 571138 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 278-178 chr18 35308574 35308787 + 2 NA non-coding (NR_024565, exon 3 of 3) non-coding (NR_024565, exon 3 of 3) 18408 NR_024565 10778 Hs.314246 NM_006629 ENSG00000257267 ZNF271P CT-ZFP48|HZF7|ZNF-EB|ZNF-dp|ZNF271|ZNFEB zinc finger protein 271, pseudogene pseudo 361-351 chr5 17917269 17917557 + 2 NA intron (NR_134286, intron 5 of 7) intron (NR_134286, intron 5 of 7) 110139 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 403-199 chr3 111309222 111309553 + 2 NA Intergenic Intergenic -232810 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 395-279 chr5 123282945 123283268 + 2 NA Intergenic MIR|SINE|MIR 140486 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 495-21 chr1 244188950 244189280 + 2 NA Intergenic HAL1ME|LINE|L1 135910 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 316-318 chr20 41986102 41986338 + 2 NA Intergenic Intergenic -367843 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 214-279 chr6 88202952 88203127 + 2 NA Intergenic L1MA3|LINE|L1 -35690 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 381-414 chrX 38506778 38506973 + 2 NA Intergenic Intergenic -54603 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 333-193 chr17 70867281 70867599 + 2 NA Intergenic Intergenic 334739 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 275-232 chr21 44748350 44748559 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -36882 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|ECTD14|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding 365-321 chr5 72834631 72834910 + 2 NA intron (NM_001364292, intron 1 of 24) Tigger3b|DNA|TcMar-Tigger -13369 NM_001364293 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 581-150 chr6 54648446 54648984 + 2 NA Intergenic Tigger17|DNA|TcMar-Tigger -198056 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 555-131 chr3 98342816 98343242 + 2 NA Intergenic Intergenic -10825 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 235-289 chr5 87804148 87804300 + 2 NA Intergenic Intergenic 142182 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 334-462 chr6 66528689 66528971 + 2 NA Intergenic Intergenic 740951 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 326-168 chr15 59974304 59974490 + 2 NA Intergenic Intergenic -29914 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 295-398 chr6 34329069 34329253 + 2 NA intron (NM_001202470, intron 6 of 8) intron (NM_001202470, intron 6 of 8) 63508 NM_006703 11165 Hs.188882 NM_006703 ENSG00000272325 NUDT3 DIPP|DIPP-1|DIPP1 nudix hydrolase 3 protein-coding 339-379 chr3 116938848 116939160 + 2 NA Intergenic L1PB3|LINE|L1 17573 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 150-45 chr18 68444890 68445030 + 2 NA Intergenic Intergenic 270148 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 416-159 chr2 22258898 22259310 + 2 NA Intergenic L1PB1|LINE|L1 -277375 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 676-2 chr1 75454810 75455337 + 2 NA intron (NM_001320285, intron 2 of 25) L1PA16|LINE|L1 156041 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 325-104 chr11 48229293 48229520 + 2 NA Intergenic LTR12C|LTR|ERV1 12596 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 254-207 chr2 191997322 191997518 + 2 NA intron (NM_001305134, intron 7 of 9) intron (NM_001305134, intron 7 of 9) -150332 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 343-109 chr12 97899987 97900271 + 2 NA Intergenic Intergenic 38992 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 351-314 chr3 144829640 144829941 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 856709 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 231-381 chr9 79338668 79338822 + 2 NA Intergenic L1M6|LINE|L1 -193079 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 306-245 chr2 109440305 109440529 + 2 NA intron (NM_001099289, intron 7 of 9) L2|LINE|L2 -126792 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 172-136 chr8 115055505 115055643 + 2 NA Intergenic LTR37B|LTR|ERV1 612439 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 417-303 chr9 36870936 36871263 + 2 NA intron (NM_001280549, intron 6 of 7) intron (NM_001280549, intron 6 of 7) -6791 NR_039766 100616278 NR_039766 ENSG00000264922 MIR4540 - microRNA 4540 ncRNA 177-89 chr2 223304899 223305045 + 2 NA Intergenic Intergenic 253042 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 367-143 chr16 5714792 5715021 + 2 NA Intergenic L2b|LINE|L2 82439 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 350-301 chr3 7869952 7870224 + 2 NA Intergenic Intergenic 146219 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 379-270 chr5 94754067 94754367 + 2 NA intron (NM_001297777, intron 16 of 19) intron (NM_001297777, intron 16 of 19) 135548 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 250-187 chr2 13053099 13053306 + 2 NA Intergenic Intergenic -46189 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 345-28 chr1 182207895 182208101 + 2 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 106063 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 295-369 chr5 5950238 5950441 + 2 NA Intergenic L1MB8|LINE|L1 386953 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 496-249 chr6 169547637 169548033 + 2 NA intron (NR_146875, intron 19 of 20) L1MC1|LINE|L1 154194 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 206-191 chr4 170669408 170669582 + 2 NA Intergenic L1MCa|LINE|L1 74240 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 343-524 chr8 4949162 4949490 + 2 NA intron (NM_033225, intron 1 of 69) L1ME3F|LINE|L1 45588 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 325-212 chr17 14636252 14636569 + 2 NA Intergenic Intergenic 332670 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 439-270 chr7 79794331 79794665 + 2 NA Intergenic Intergenic -340333 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 247-336 chr5 114117760 114117961 + 2 NA Intergenic tRNA-Cys-TGY|tRNA|tRNA -244210 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 505-233 chr5 3774839 3775126 + 2 NA Intergenic Intergenic 179150 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 201-35 chr10 111420869 111421025 + 2 NA Intergenic Intergenic 306656 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 221-56 chr11 101620384 101620557 + 2 NA Intergenic Intergenic -36463 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 355-269 chr2 220870356 220870628 + 2 NA Intergenic Intergenic 701812 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 338-535 chr8 58347007 58347266 + 2 NA Intergenic Intergenic -64128 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 527-149 chr2 193796396 193796783 + 2 NA Intergenic Intergenic -547680 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 387-221 chr3 38434490 38434801 + 2 NA Intergenic L1MA4A|LINE|L1 -19245 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 416-228 chr3 108926691 108926973 + 2 NA intron (NM_001363884, intron 1 of 3) L1PB1|LINE|L1 27014 NM_001363884 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 298-309 chr3 167635716 167635953 + 2 NA intron (NM_001348951, intron 2 of 18) intron (NM_001348951, intron 2 of 18) 18108 NM_001366157 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 495-154 chr3 48361198 48361577 + 2 NA Intergenic L1MD2|LINE|L1 -10832 NM_207102 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 216-84 chr13 59567545 59567756 + 2 NA Intergenic Intergenic -445068 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 238-229 chr3 25198181 25198387 + 2 NA intron (NM_001290216, intron 4 of 10) L1MA3|LINE|L1 -142518 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 271-367 chr6 8280565 8280772 + 2 NA Intergenic Intergenic 154877 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 688-62 chr2 60271399 60271927 + 2 NA Intergenic Intergenic 111373 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 405-10 chr1 89281663 89281947 + 2 NA Intergenic Intergenic 8557 NR_077244 729930 Hs.745054 NR_077244 LOC729930 - chromosome 11 open reading frame 74 pseudogene pseudo 532-93 chr17 55317884 55318324 + 2 NA intron (NM_001330375, intron 3 of 3) intron (NM_001330375, intron 3 of 3) 51882 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 474-249 chr5 179454918 179455321 + 2 NA Intergenic Intergenic 61592 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 196-215 chr5 154259144 154259290 + 2 NA intron (NM_198321, intron 1 of 11) L1MC4a|LINE|L1 68484 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 799-37 chr3 58552434 58552889 + 2 NA Intergenic L1M3f|LINE|L1 -15471 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|CBAS6|THCCox acyl-CoA oxidase 2 protein-coding 263-218 chr2 151408917 151409123 + 2 NA promoter-TSS (NM_001177663) promoter-TSS (NM_001177663) -882 NM_001177663 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 670-89 chr4 149661412 149661939 + 2 NA intron (NM_001363507, intron 7 of 13) L1MA6|LINE|L1 154168 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 563-50 chr14 44838696 44839073 + 2 NA Intergenic Intergenic -39758 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 380-277 chr4 51875201 51875417 + 2 NA intron (NM_001040402, intron 4 of 10) intron (NM_001040402, intron 4 of 10) 31730 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 496-231 chr6 23601934 23602273 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -524112 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 580-151 chr5 52365467 52365951 + 2 NA Intergenic AluSx1|SINE|Alu 357678 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 239-398 chr8 53575810 53575995 + 2 NA Intergenic L1MD2|LINE|L1 -51937 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 199-144 chr20 55058218 55058338 + 2 NA Intergenic Intergenic -364765 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 116-11 chr13 94211645 94211714 + 2 NA intron (NM_005708, intron 4 of 8) MIRc|SINE|MIR -23688 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 459-327 chr9 34060259 34060644 + 2 NA Intergenic L1ME4a|LINE|L1 -11252 NM_001370059 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 676-109 chr8 108035974 108036426 + 2 NA intron (NM_178565, intron 2 of 5) Tigger1|DNA|TcMar-Tigger 45739 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 296-474 chr8 103893012 103893195 + 2 NA intron (NM_001282881, intron 2 of 20) intron (NM_001282881, intron 2 of 20) 73883 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 391-253 chr4 37396297 37396679 + 2 NA intron (NM_001144990, intron 3 of 6) intron (NM_001144990, intron 3 of 6) -57437 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 304-335 chr3 68670339 68670530 + 2 NA Intergenic Intergenic 169797 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 331-286 chr2 137015069 137015392 + 2 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 249685 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 407-272 chr6 38470116 38470447 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -11315 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 430-232 chr5 11601172 11601514 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -12277 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 224-19 chr1 208767781 208767972 + 2 NA Intergenic Intergenic 39188 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 338-314 chr22 28444726 28444920 + 2 NA intron (NM_001145418, intron 2 of 22) L2c|LINE|L2 -15046 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 343-544 chr8 90426238 90426565 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 179662 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 327-68 chr10 121179998 121180285 + 2 NA Intergenic L1MC5|LINE|L1 328779 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 388-313 chr6 138737647 138737974 + 2 NA intron (NR_161205, intron 2 of 2) L1ME3|LINE|L1 -35710 NM_015439 25901 Hs.412019 NM_015439 ENSG00000024862 CCDC28A C6orf80|CCRL1AP coiled-coil domain containing 28A protein-coding 394-173 chr2 79070702 79071089 + 2 NA Intergenic Intergenic 17098 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 277-373 chr7 39705811 39705973 + 2 NA intron (NM_005402, intron 4 of 4) intron (NM_005402, intron 4 of 4) -27676 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 391-162 chr2 32895573 32895849 + 2 NA intron (NR_027099, intron 7 of 10) Charlie10|DNA|hAT-Charlie -31416 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 380-92 chr12 34215979 34216263 + 2 NA Intergenic AluSg|SINE|Alu 193625 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 554-107 chr19 42523058 42523525 + 2 NA intron (NM_001184813, intron 2 of 7) intron (NM_001184813, intron 2 of 7) 5190 NM_001712 634 Hs.512682 NM_001712 ENSG00000079385 CEACAM1 BGP|BGP1|BGPI carcinoembryonic antigen related cell adhesion molecule 1 protein-coding 399-3 chr1 49787017 49787244 + 2 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 236824 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 309-409 chr4 125800043 125800297 + 2 NA Intergenic Intergenic 292911 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 344-87 chr11 106298977 106299213 + 2 NA Intergenic MER66-int|LTR|ERV1 47688 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 215-300 chr7 64368045 64368199 + 2 NA Intergenic L1M2|LINE|L1 54161 NM_001170905 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 477-184 chr21 45241958 45242382 + 2 NA intron (NR_135279, intron 1 of 2) L1M2|LINE|L1 7830 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 578-152 chr6 164502880 164503207 + 2 NA Intergenic Intergenic 319020 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 266-49 chr10 104713572 104713771 + 2 NA intron (NM_014978, intron 1 of 26) L1MC|LINE|L1 -47455 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 475-305 chrX 82411912 82412280 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -1096194 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 429-257 chr6 100629303 100629711 + 2 NA intron (NM_006828, intron 26 of 41) intron (NM_006828, intron 26 of 41) -165832 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 305-551 chr8 131047535 131047757 + 2 NA Intergenic MIRb|SINE|MIR -6737 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 411-102 chr15 53866474 53866760 + 2 NA Intergenic Intergenic -103739 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 529-231 chr9 72121342 72121781 + 2 NA intron (NM_001242507, intron 1 of 13) AluSq2|SINE|Alu 6966 NM_001242507 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 398-367 chr8 124080097 124080304 + 2 NA intron (NM_001039112, intron 32 of 40) intron (NM_001039112, intron 32 of 40) -39418 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 356-243 chr2 65699749 65700051 + 2 NA Intergenic Intergenic -267301 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 669-82 chr4 72966178 72966684 + 2 NA Intergenic L1MB5|LINE|L1 103285 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 351-409 chr6 14629365 14629566 + 2 NA Intergenic Intergenic -344011 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 237-356 chr7 69525065 69525226 + 2 NA Intergenic L1M4b|LINE|L1 72479 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 205-224 chr5 79382730 79382911 + 2 NA intron (NM_001277078, intron 5 of 5) L1MA4A|LINE|L1 131016 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 531-101 chr2 22039443 22039921 + 2 NA Intergenic L1MB5|LINE|L1 -329030 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 574-69 chr2 35010662 35011038 + 2 NA Intergenic Intergenic 333293 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 140-25 chr14 59654716 59654808 + 2 NA intron (NM_021136, intron 3 of 8) L1MB7|LINE|L1 -7742 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 205-140 chr2 78855780 78855924 + 2 NA Intergenic Intergenic -169850 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 355-234 chr2 40385928 40386132 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 44274 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 426-126 chr2 15122859 15123196 + 2 NA Intergenic Intergenic 438307 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 314-15 chr1 73744361 73744669 + 2 NA Intergenic Intergenic 69836 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 317-384 chr5 39992463 39992724 + 2 NA Intergenic Intergenic -59698 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 261-53 chr10 129766955 129767132 + 2 NA 3' UTR (NM_002412, exon 5 of 5) 3' UTR (NM_002412, exon 5 of 5) 76331 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 395-285 chr5 178979886 178980113 + 2 NA 3' UTR (NM_000843, exon 11 of 11) 3' UTR (NM_000843, exon 11 of 11) 15321 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 208-97 chr18 11207551 11207718 + 2 NA Intergenic L1ME1|LINE|L1 -58872 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 175-54 chr15 62653969 62654098 + 2 NA intron (NM_015059, intron 4 of 55) L1MA7|LINE|L1 6722 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 154-16 chr11 41948806 41948935 + 2 NA Intergenic Intergenic 136588 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 517-215 chr5 43880296 43880722 + 2 NA Intergenic Intergenic -277279 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 405-120 chr18 73930101 73930345 + 2 NA Intergenic Intergenic 217611 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 176-98 chr4 101851586 101851708 + 2 NA intron (NM_017935, intron 2 of 16) intron (NM_017935, intron 2 of 16) 37805 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 297-97 chr12 15444728 15444882 + 2 NA intron (NM_030667, intron 1 of 26) MLT1A0|LTR|ERVL-MaLR -101806 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 270-159 chr17 76755232 76755426 + 2 NA intron (NR_148240, intron 9 of 13) intron (NR_148240, intron 9 of 13) 17828 NM_001353019 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 420-198 chr4 43637342 43637698 + 2 NA Intergenic Intergenic -144977 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 286-369 chr5 147837240 147837486 + 2 NA intron (NM_001354966, intron 1 of 4) intron (NM_001354966, intron 1 of 4) 1868 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 432-63 chr12 62083708 62083978 + 2 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 108996 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 324-581 chrX 81637271 81637447 + 2 NA Intergenic L1M1|LINE|L1 435257 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 363-26 chr1 195528718 195528899 + 2 NA Intergenic L1MA4|LINE|L1 559907 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 181-28 chr11 79474819 79474960 + 2 NA Intergenic Intergenic -33859 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 349-133 chr12 70465438 70465713 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 99285 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 290-316 chr4 71873446 71873709 + 2 NA Intergenic Intergenic -68057 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 301-62 chr11 40777071 40777258 + 2 NA intron (NM_020929, intron 1 of 4) L1PA15-16|LINE|L1 -484034 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 310-138 chr14 62022908 62023111 + 2 NA intron (NM_001367661, intron 4 of 8) L1MEg|LINE|L1 -94348 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 328-635 chrX 96485170 96485414 + 2 NA Intergenic Intergenic -147390 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 615-41 chr15 24714027 24714441 + 2 NA Intergenic Intergenic 38840 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 523-126 chr2 36762637 36763041 + 2 NA intron (NM_001177969, intron 6 of 14) intron (NM_001177969, intron 6 of 14) 66132 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 492-87 chr14 59199741 59200197 + 2 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) 11302 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 410-140 chr2 83746264 83746604 + 2 NA Intergenic Intergenic 223620 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 209-44 chr10 90678843 90679042 + 2 NA Intergenic MIR|SINE|MIR -138137 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 323-116 chr12 72876370 72876680 + 2 NA Intergenic L1MB3|LINE|L1 -282665 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 270-306 chr5 86143214 86143424 + 2 NA Intergenic Intergenic -139125 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 306-430 chr6 54555133 54555371 + 2 NA Intergenic L1PA8|LINE|L1 246811 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 238-56 chr10 122105004 122105197 + 2 NA intron (NM_001291877, intron 5 of 19) intron (NM_001291877, intron 5 of 19) -7785 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 176-144 chr8 118557498 118557622 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -63441 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 801-31 chr20 21255651 21256319 + 2 NA Intergenic L1M5|LINE|L1 -37696 NR_109956 101929591 Hs.656066 NR_109956 ENSG00000232712 KIZ-AS1 - KIZ antisense RNA 1 ncRNA 202-88 chr16 14158319 14158488 + 2 NA intron (NM_001308142, intron 3 of 16) MIRb|SINE|MIR -28283 NM_001365413 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 323-220 chr19 50600001 50600288 + 2 NA Intergenic L1MEd|LINE|L1 -4819 NR_004384 100126781 Hs.707968 NR_004384 SNAR-F - small NF90 (ILF3) associated RNA F snRNA 136-84 chr8 33026846 33026925 + 2 NA Intergenic MER50|LTR|ERV1 305050 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 366-482 chrX 69839364 69839695 + 2 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) -183328 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 250-330 chr5 5278774 5278984 + 2 NA intron (NM_139056, intron 18 of 22) intron (NM_139056, intron 18 of 22) 138549 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 366-480 chrX 45649591 45649790 + 2 NA Intergenic Intergenic -81398 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 298-380 chr5 127468322 127468477 + 2 NA Intergenic AluSz|SINE|Alu -49241 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 261-207 chr2 221727702 221727854 + 2 NA Intergenic Intergenic -153576 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 266-372 chr6 126420665 126420884 + 2 NA intron (NR_104462, intron 2 of 3) L4_B_Mam|LINE|RTE-X -63857 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 205-113 chr16 79464990 79465092 + 2 NA Intergenic L3|LINE|CR1 135696 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 193-62 chr14 60119409 60119534 + 2 NA intron (NM_001330177, intron 7 of 10) intron (NM_001330177, intron 7 of 10) 27548 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 341-124 chr12 81915942 81916149 + 2 NA Intergenic Intergenic -37674 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 226-90 chr14 57505235 57505365 + 2 NA Intergenic Intergenic -11443 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 342-229 chr2 48759443 48759762 + 2 NA intron (NM_001198593, intron 10 of 10) intron (NM_001198593, intron 10 of 10) -3878 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 396-378 chrX 37449443 37449771 + 2 NA intron (NM_000950, intron 4 of 4) intron (NM_000950, intron 4 of 4) 100243 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 342-36 chr1 188086002 188086272 + 2 NA Intergenic Intergenic 642509 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 350-536 chr8 122130366 122130627 + 2 NA Intergenic Intergenic 438148 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 300-343 chr4 175017726 175017963 + 2 NA Intergenic Intergenic 99486 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 533-210 chr7 4854510 4854807 + 2 NA intron (NM_018059, intron 2 of 14) AluSx1|SINE|Alu 7372 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 410-228 chr4 175519212 175519523 + 2 NA Intergenic Intergenic 268309 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 516-206 chr5 50927309 50927636 + 2 NA Intergenic L1MA9|LINE|L1 42715 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 296-318 chr3 175429728 175430021 + 2 NA intron (NM_207015, intron 5 of 13) L1ME3G|LINE|L1 60334 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 421-113 chr18 22195055 22195335 + 2 NA intron (NM_005257, intron 6 of 6) intron (NM_005257, intron 6 of 6) 25758 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 496-68 chr13 85920333 85920654 + 2 NA Intergenic MER106A|DNA|hAT-Charlie -121074 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 288-297 chr4 57970514 57970736 + 2 NA Intergenic Intergenic 544753 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 201-100 chr17 48673636 48673796 + 2 NA Intergenic L1MB7|LINE|L1 -41157 NR_029582 406972 NR_029582 ENSG00000210741 MIR196A1 MIRN196-1|MIRN196A1|mir-196a-1 microRNA 196a-1 ncRNA 297-53 chr10 59981906 59982117 + 2 NA Intergenic Intergenic -21098 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 331-297 chr2 179495777 179495951 + 2 NA intron (NR_148056, intron 5 of 9) L1M1|LINE|L1 66724 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 266-267 chr3 174753907 174754072 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -105345 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 299-150 chr15 58219820 58219983 + 2 NA Intergenic L1PA16|LINE|L1 81520 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 266-321 chr5 35909883 35910078 + 2 NA exon (NM_144647, exon 4 of 5) exon (NM_144647, exon 4 of 5) 28642 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 309-464 chr5 165177908 165178170 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 707760 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 461-145 chr2 155121865 155122305 + 2 NA Intergenic Intergenic 423390 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 519-30 chr10 122873917 122874363 + 2 NA intron (NM_152644, intron 1 of 3) L1MC2|LINE|L1 5441 NM_152644 196792 Hs.114648 NM_152644 ENSG00000213185 FAM24B - family with sequence similarity 24 member B protein-coding 578-171 chr8 55382306 55382797 + 2 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 72770 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 435-178 chr4 182120247 182120501 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 24141 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 268-330 chr6 8542344 8542512 + 2 NA intron (NR_038980, intron 2 of 4) intron (NR_038980, intron 2 of 4) 106805 NR_038979 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 268-204 chr2 114894637 114894857 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -61199 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 232-331 chr6 128570998 128571195 + 2 NA Intergenic Intergenic -50497 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 189-116 chr21 24507042 24507178 + 2 NA intron (NR_135519, intron 1 of 2) L1PA13|LINE|L1 78370 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 357-384 chr6 61715251 61715546 + 2 NA intron (NR_146872, intron 7 of 9) intron (NR_146872, intron 7 of 9) 141268 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 260-298 chr3 191293487 191293684 + 2 NA intron (NM_198152, intron 4 of 8) intron (NM_198152, intron 4 of 8) -35809 NM_174908 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 201-136 chr20 52559280 52559395 + 2 NA Intergenic L1MA5A|LINE|L1 -61501 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 323-349 chr3 160043294 160043455 + 2 NA intron (NR_108088, intron 3 of 9) Tigger3|DNA|TcMar-Tigger 22725 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 231-180 chr2 146769557 146769723 + 2 NA Intergenic Intergenic 182583 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 366-380 chr6 122898695 122898992 + 2 NA Intergenic L2|LINE|L2 -97392 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 403-68 chr12 28254061 28254405 + 2 NA intron (NM_001352082, intron 2 of 13) intron (NM_001352082, intron 2 of 13) -63495 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 304-340 chr3 79635570 79635772 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 127784 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 542-108 chr2 199212152 199212529 + 2 NA Intergenic L1M3|LINE|L1 245599 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 319-145 chr14 68037636 68037884 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 214168 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 479-183 chr5 13880751 13880999 + 2 NA intron (NM_001369, intron 21 of 78) L1M3de|LINE|L1 63605 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 483-283 chr9 29688268 29688747 + 2 NA Intergenic AluSq|SINE|Alu -474906 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 276-433 chr7 89680976 89681214 + 2 NA Intergenic Intergenic -438305 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 702-24 chr15 56584544 56585037 + 2 NA Intergenic L1M4|LINE|L1 -119653 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 291-256 chr20 12305674 12305945 + 2 NA Intergenic Intergenic 387916 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 362-406 chr7 94195952 94196264 + 2 NA Intergenic Intergenic -191753 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 322-439 chr5 123920737 123920918 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 375410 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 169-81 chr3 168862439 168862558 + 2 NA Intergenic Intergenic -39447 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 292-387 chr6 152474780 152474987 + 2 NA intron (NM_182961, intron 14 of 145) L1MEd|LINE|L1 94353 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 273-479 chrX 58209286 58209487 + 2 NA Intergenic HSAT4|Satellite|centr -298753 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 231-172 chr2 106926337 106926554 + 2 NA Intergenic L1MCa|LINE|L1 -39336 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 453-138 chr20 9048860 9049179 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -20035 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 232-30 chr10 56300438 56300619 + 2 NA Intergenic Intergenic 60731 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 193-219 chrX 63501081 63501231 + 2 NA intron (NR_152612, intron 1 of 2) L1MA3|LINE|L1 59939 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 245-188 chr2 43389840 43389997 + 2 NA intron (NM_001083953, intron 29 of 37) L2c|LINE|L2 162707 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 345-537 chr8 128549608 128549876 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 14937 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 372-49 chr10 67196775 67197075 + 2 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 184659 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 300-57 chr10 111608168 111608359 + 2 NA Intergenic Intergenic 493972 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 360-499 chrX 46492949 46493302 + 2 NA Intergenic Intergenic 45828 NM_001129898 55634 Hs.632800 NM_017776 ENSG00000147121 KRBOX4 ZNF673 KRAB box domain containing 4 protein-coding 307-261 chr2 203135570 203135760 + 2 NA intron (NM_001114132, intron 26 of 54) intron (NM_001114132, intron 26 of 54) -102776 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 527-59 chr12 30559140 30559626 + 2 NA Intergenic L1M4c|LINE|L1 117861 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 395-317 chr7 101450839 101451164 + 2 NA intron (NM_133457, intron 3 of 12) L1ME4a|LINE|L1 88126 NM_001278563 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 377-292 chr4 71757195 71757558 + 2 NA intron (NM_000583, intron 7 of 12) intron (NM_000583, intron 7 of 12) 26703 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 311-260 chr2 95189876 95190090 + 2 NA Intergenic Intergenic 24174 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 271-351 chr5 68728387 68728633 + 2 NA Intergenic Intergenic 301417 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 283-115 chr13 22629689 22629955 + 2 NA Intergenic MER66C|LTR|ERV1 268359 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 564-211 chr9 11734032 11734441 + 2 NA Intergenic L1MB7|LINE|L1 -959149 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 741-64 chr7 38131298 38131821 + 2 NA Intergenic Intergenic -46686 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 351-180 chr17 79654239 79654514 + 2 NA Intergenic Intergenic -43325 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 189-86 chr2 18767966 18768120 + 2 NA Intergenic L1M4b|LINE|L1 -178463 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 606-121 chr4 87240276 87240721 + 2 NA Intergenic Intergenic -19880 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 349-474 chr7 54474906 54475125 + 2 NA Intergenic Intergenic -67310 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 339-625 chrX 78070169 78070343 + 2 NA Intergenic Intergenic -33992 NM_000291 5230 Hs.78771 NM_000291 ENSG00000102144 PGK1 HEL-S-68p|MIG10|PGKA phosphoglycerate kinase 1 protein-coding 177-64 chr17 48341618 48341766 + 2 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 47345 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 229-291 chr5 12108252 12108469 + 2 NA Intergenic Intergenic -203914 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 391-174 chr2 70454851 70455195 + 2 NA intron (NM_003236, intron 4 of 5) intron (NM_003236, intron 4 of 5) 26617 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 227-86 chr12 82639171 82639395 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -47623 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 360-404 chr6 56219717 56220053 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 27695 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 437-3 chr1 39652743 39653139 + 2 NA Intergenic Intergenic -13298 NM_014571 26508 Hs.472566 NM_014571 ENSG00000163909 HEYL HESR3|HEY3|HRT3|bHLHb33 hes related family bHLH transcription factor with YRPW motif like protein-coding 313-45 chr10 53867466 53867714 + 2 NA intron (NM_001354411, intron 27 of 34) intron (NM_001354411, intron 27 of 34) -618640 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 236-294 chr5 121592644 121592815 + 2 NA Intergenic L1PA15|LINE|L1 -259153 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 764-3 chr1 94757377 94757871 + 2 NA intron (NR_160781, intron 1 of 4) intron (NR_160781, intron 1 of 4) -11724 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 227-411 chrX 105267981 105268175 + 2 NA intron (NM_017416, intron 5 of 10) intron (NM_017416, intron 5 of 10) -47385 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 224-14 chr1 118869764 118869954 + 2 NA Intergenic L3|LINE|CR1 118484 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 291-69 chr11 24285192 24285353 + 2 NA Intergenic L1PA16|LINE|L1 -211781 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 582-14 chr11 38643343 38643823 + 2 NA intron (NR_120554, intron 1 of 4) intron (NR_120554, intron 1 of 4) 2773 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 335-457 chr6 38986668 38986976 + 2 NA intron (NM_001371, intron 86 of 91) L2|LINE|L2 -33715 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 197-229 chr9 99207764 99207885 + 2 NA Intergenic L1MA4A|LINE|L1 14118 NR_024532 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2 alpha-1,3/1,6-mannosyltransferase protein-coding 255-435 chr8 123672148 123672359 + 2 NA Intergenic Intergenic -18452 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 302-133 chr14 75425271 75425463 + 2 NA Intergenic Intergenic -2357 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 136-21 chr14 61828831 61828960 + 2 NA intron (NM_001367656, intron 1 of 7) intron (NM_001367656, intron 1 of 7) 16192 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 288-342 chr5 131140648 131140839 + 2 NA Intergenic L1MC1|LINE|L1 24513 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 298-251 chr20 14698961 14699194 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 144693 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 342-352 chr4 32753641 32753885 + 2 NA Intergenic Intergenic 402725 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 367-462 chr8 118682587 118682904 + 2 NA intron (NR_038210, intron 3 of 4) L1MC|LINE|L1 -60782 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 204-41 chr11 50621750 50621860 + 2 NA Intergenic ALR/Alpha|Satellite|centr 212658 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 299-160 chr16 60772853 60773135 + 2 NA Intergenic Intergenic 282772 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 205-51 chr11 32182903 32183047 + 2 NA Intergenic Intergenic -39063 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 658-87 chr4 42334476 42334952 + 2 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 56554 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 473-48 chr11 101950443 101950791 + 2 NA intron (NM_020802, intron 4 of 10) intron (NM_020802, intron 4 of 10) -34095 NM_178127 253935 Hs.318370 NM_178127 ENSG00000187151 ANGPTL5 - angiopoietin like 5 protein-coding 235-287 chr5 69060937 69061079 + 2 NA Intergenic L1MA3|LINE|L1 -31081 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 130-25 chr15 96991657 96991766 + 2 NA Intergenic L1MCa|LINE|L1 208276 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 321-595 chr9 29712136 29712337 + 2 NA Intergenic Intergenic -498635 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 571-17 chr10 65299993 65300556 + 2 NA Intergenic MER21B|LTR|ERVL -271151 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 629-121 chr7 100964446 100965049 + 2 NA exon (NM_005960, exon 6 of 12) exon (NM_005960, exon 6 of 12) -4876 NM_001164462 10071 Hs.489355 NM_001164462 ENSG00000205277 MUC12 MUC-11|MUC-12|MUC11 mucin 12, cell surface associated protein-coding 146-93 chr9 84579604 84579695 + 2 NA Intergenic L1ME3F|LINE|L1 -88809 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 355-71 chr10 121125602 121125826 + 2 NA Intergenic Intergenic 274352 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 398-352 chr8 79805017 79805280 + 2 NA intron (NR_110954, intron 3 of 5) AluJr|SINE|Alu 37006 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 368-256 chr2 219479679 219479949 + 2 NA exon (NM_005876, exon 24 of 41) exon (NM_005876, exon 24 of 41) -16541 NM_001286811 100996693 Hs.21639 NM_001286811 ENSG00000286095 SPEGNB - SPEG neighbor protein-coding 311-437 chr6 102210815 102211097 + 2 NA Intergenic Intergenic 811971 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 329-167 chr14 72615817 72616103 + 2 NA Intergenic Intergenic 99140 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 506-151 chr2 100648187 100648545 + 2 NA Intergenic LTR1D1|LTR|ERV1 44627 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 343-146 chr14 71529485 71529780 + 2 NA intron (NM_001354289, intron 5 of 23) intron (NM_001354289, intron 5 of 23) 41771 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 451-237 chr8 115367812 115368213 + 2 NA Intergenic Intergenic 300001 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 449-270 chr8 57607895 57608167 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -138118 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 276-355 chr4 164045552 164045737 + 2 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) 152067 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 261-100 chr14 47940158 47940343 + 2 NA Intergenic MER57-int|LTR|ERV1 -145236 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 563-37 chr12 34427655 34428184 + 2 NA Intergenic ALR/Alpha|Satellite|centr 405423 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 375-196 chr2 16822932 16823298 + 2 NA Intergenic Intergenic -157281 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 220-341 chr7 42234763 42234940 + 2 NA intron (NM_000168, intron 1 of 14) intron (NM_000168, intron 1 of 14) 2358 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 384-399 chr9 79752851 79753059 + 2 NA Intergenic AluSz|SINE|Alu -71575 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 431-77 chr14 42729710 42730028 + 2 NA Intergenic Intergenic 1123013 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 270-391 chr8 105491108 105491298 + 2 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 171660 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 243-409 chr7 17136194 17136413 + 2 NA Intergenic L1MC3|LINE|L1 -162349 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 324-542 chr8 118387235 118387493 + 2 NA intron (NM_001349811, intron 3 of 4) MIRb|SINE|MIR -233637 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 216-287 chr5 116780792 116780951 + 2 NA Intergenic AluSg|SINE|Alu -18662 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 415-188 chr3 114953406 114953676 + 2 NA intron (NM_001348805, intron 3 of 10) L1MEf|LINE|L1 -52916 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 325-41 chr1 231189322 231189563 + 2 NA intron (NM_001300889, intron 3 of 11) MLT1D|LTR|ERVL-MaLR -1815 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 326-6 chr1 30676188 30676428 + 2 NA Intergenic L1ME4b|LINE|L1 -42464 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 237-127 chr16 4068000 4068202 + 2 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) 48341 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 330-520 chr8 87384504 87384814 + 2 NA Intergenic MIR|SINE|MIR 489356 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 354-372 chr5 51966916 51967232 + 2 NA Intergenic Intergenic -40957 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 262-255 chr20 55034359 55034610 + 2 NA Intergenic MER66-int|LTR|ERV1 -388559 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 288-421 chr7 111791398 111791664 + 2 NA intron (NM_001363540, intron 30 of 52) AluSx|SINE|Alu -16974 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 197-21 chr10 12123979 12124117 + 2 NA TTS (NM_018706) TTS (NM_018706) -5593 NM_001142628 55176 Hs.112955 NM_018144 ENSG00000065665 SEC61A2 - SEC61 translocon alpha 2 subunit protein-coding 509-182 chr5 18495782 18496170 + 2 NA Intergenic L1MDa|LINE|L1 688702 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 297-367 chr5 42144340 42144538 + 2 NA Intergenic AluSx1|SINE|Alu 30906 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 320-54 chr10 25285855 25286018 + 2 NA intron (NM_020752, intron 2 of 10) L1ME1|LINE|L1 -109660 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 328-243 chr2 6848858 6849183 + 2 NA non-coding (NR_046236, exon 5 of 5) non-coding (NR_046236, exon 5 of 5) -8556 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 328-139 chr14 35465721 35466045 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy -61129 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 333-131 chr13 48664255 48664567 + 2 NA intron (NM_001308471, intron 1 of 1) L1MA5A|LINE|L1 10482 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 285-66 chr11 78337200 78337402 + 2 NA intron (NM_080491, intron 1 of 9) A-rich|Low_complexity|Low_complexity 4579 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 307-109 chr12 108204241 108204530 + 2 NA intron (NM_001304447, intron 3 of 9) (CCCT)n|Simple_repeat|Simple_repeat 72599 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 607-117 chr5 44923898 44924357 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 115180 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 134-39 chr17 81217627 81217726 + 2 NA intron (NM_001319228, intron 2 of 25) intron (NM_001319228, intron 2 of 25) 5289 NM_014984 22994 Hs.514578 NM_014984 ENSG00000141577 CEP131 AZ1|AZI1|ZA1 centrosomal protein 131 protein-coding 333-541 chr7 64969352 64969578 + 2 NA Intergenic L1P4|LINE|L1 21571 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 448-12 chr1 115172773 115173142 + 2 NA Intergenic Intergenic -83454 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 353-485 chr7 43009513 43009853 + 2 NA Intergenic Intergenic 77307 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 355-491 chr8 49737487 49737797 + 2 NA Intergenic MIR3|SINE|MIR -172154 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 241-388 chr8 35033414 35033605 + 2 NA Intergenic Intergenic -201966 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 241-85 chr12 55227392 55227593 + 2 NA Intergenic Intergenic 6467 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 323-253 chr2 76884576 76884897 + 2 NA intron (NR_146416, intron 1 of 1) L1M5|LINE|L1 -101229 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 439-293 chr8 134433114 134433378 + 2 NA Intergenic Intergenic -164825 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 342-497 chr7 97627801 97627999 + 2 NA Intergenic Intergenic -104186 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 387-134 chr16 71449338 71449672 + 2 NA exon (NM_001304494, exon 3 of 3) exon (NM_001304494, exon 3 of 3) -7451 NM_001367365 629-35 chr14 32799826 32800400 + 2 NA intron (NM_004274, intron 12 of 13) (TA)n|Simple_repeat|Simple_repeat -138766 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 444-196 chr5 71841972 71842295 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 122858 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 269-207 chr2 138373345 138373543 + 2 NA Intergenic Intergenic -128326 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 322-449 chr6 20806069 20806310 + 2 NA intron (NM_017774, intron 8 of 15) L1PA15|LINE|L1 271732 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 459-318 chr8 139259110 139259467 + 2 NA Intergenic Intergenic -345247 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 218-182 chr2 216743739 216743906 + 2 NA Intergenic Intergenic -48273 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 533-234 chr8 121110477 121110862 + 2 NA Intergenic Intergenic -298623 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 517-253 chr7 79719135 79719510 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 265362 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 250-289 chr3 150346043 150346190 + 2 NA Intergenic Intergenic -22369 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 318-117 chr11 110846741 110846994 + 2 NA Intergenic L1PA7|LINE|L1 -133678 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 383-199 chr2 120725810 120726032 + 2 NA Intergenic L1MC5|LINE|L1 -9947 NM_001371271 389-54 chr11 21393452 21393678 + 2 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 723979 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 330-45 chr1 241687768 241687970 + 2 NA intron (NM_001367482, intron 8 of 27) intron (NM_001367482, intron 8 of 27) 35588 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 475-224 chr5 52011778 52012133 + 2 NA intron (NR_147166, intron 3 of 3) intron (NR_147166, intron 3 of 3) 3924 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 132-88 chr8 89671436 89671531 + 2 NA Intergenic L1ME3D|LINE|L1 86228 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 281-375 chr5 153198071 153198211 + 2 NA Intergenic Intergenic -225792 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 317-92 chr11 109489689 109489898 + 2 NA Intergenic L1M4a1|LINE|L1 67603 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 490-301 chr8 126255178 126255601 + 2 NA Intergenic L1ME3D|LINE|L1 -70106 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 495-158 chr3 80644099 80644432 + 2 NA Intergenic Intergenic -120632 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 335-349 chr3 78972183 78972350 + 2 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 47193 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 284-199 chr2 78049186 78049392 + 2 NA intron (NR_110288, intron 1 of 3) L1PA14|LINE|L1 -39441 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 283-324 chr4 61638031 61638196 + 2 NA intron (NM_001371343, intron 5 of 23) L1ME2z|LINE|L1 435941 NM_001371342 448-134 chr2 221856103 221856380 + 2 NA Intergenic MamRep564|Unknown|Unknown -282039 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 311-299 chr20 21999705 21999875 + 2 NA Intergenic L1MA4A|LINE|L1 -54300 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 437-211 chr5 22726704 22727038 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 126473 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 285-248 chr21 23389702 23389912 + 2 NA Intergenic L1MD2|LINE|L1 -4972 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 339-305 chr20 3487350 3487526 + 2 NA intron (NM_001323332, intron 1 of 25) AluSg7|SINE|Alu 16420 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 518-248 chr5 169366220 169366595 + 2 NA Intergenic L2a|LINE|L2 -65268 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 360-351 chr5 19632330 19632632 + 2 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 253791 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 277-119 chr14 78423523 78423694 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 19889 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 223-9 chr1 75983995 75984120 + 2 NA Intergenic L1P4a|LINE|L1 -27267 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 333-377 chr4 12946053 12946243 + 2 NA Intergenic L1MC3|LINE|L1 538192 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 327-230 chr19 56790869 56791088 + 2 NA intron (NR_110744, intron 2 of 3) intron (NR_110744, intron 2 of 3) -21502 NR_023847 100169890 NR_023847 PEG3-AS1 APEG3|NCRNA00155|PEG3-AS|PEG3AS PEG3 antisense RNA 1 ncRNA 256-133 chr14 101056991 101057200 + 2 NA TTS (NR_036133) TTS (NR_036133) 876 NR_036133 574410 NR_029969 ENSG00000208004 MIR323B MIR453|MIRN453|hsa-mir-453|mir-323b microRNA 323b ncRNA 144-101 chr8 91602024 91602141 + 2 NA Intergenic L2c|LINE|L2 352763 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 454-164 chr2 109014184 109014508 + 2 NA Intergenic Intergenic -25126 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 340-60 chr10 112954184 112954418 + 2 NA intron (NM_001198530, intron 3 of 10) intron (NM_001198530, intron 3 of 10) 4051 NM_001198530 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 248-398 chr8 56827180 56827396 + 2 NA Intergenic L1MC1|LINE|L1 166579 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 286-79 chr11 128642560 128642776 + 2 NA Intergenic L1PA16|LINE|L1 -43867 NM_001271012 2313 Hs.504281 NM_002017 ENSG00000151702 FLI1 BDPLT21|EWSR2|SIC-1 Fli-1 proto-oncogene, ETS transcription factor protein-coding 432-36 chr10 91137784 91138192 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 15092 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 309-150 chr14 52027891 52028086 + 2 NA intron (NM_007361, intron 11 of 21) intron (NM_007361, intron 11 of 21) 38442 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 392-111 chr17 54883501 54883737 + 2 NA Intergenic Intergenic -17072 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 392-241 chr4 181735421 181735737 + 2 NA Intergenic Intergenic 94394 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 296-13 chr1 118465057 118465295 + 2 NA Intergenic MIRb|SINE|MIR -279948 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 275-194 chr2 68220249 68220423 + 2 NA intron (NM_000945, intron 1 of 5) L1ME1|LINE|L1 32196 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 371-254 chr3 125613498 125613857 + 2 NA Intergenic Intergenic -18180 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 309-476 chr6 62407350 62407545 + 2 NA Intergenic Intergenic -121220 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 314-113 chr12 4437884 4438160 + 2 NA intron (NM_020996, intron 2 of 2) L1M5|LINE|L1 7592 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 155-89 chr6 68496691 68496825 + 2 NA Intergenic L1MEc|LINE|L1 137566 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 284-193 chr2 40960053 40960291 + 2 NA Intergenic Intergenic -447737 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 223-194 chr21 42550279 42550445 + 2 NA intron (NM_001320537, intron 9 of 19) L1MB8|LINE|L1 36510 NM_001320537 54020 Hs.547009 NM_018964 ENSG00000160190 SLC37A1 G3PP solute carrier family 37 member 1 protein-coding 214-252 chr4 180953048 180953234 + 2 NA Intergenic Intergenic 206008 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 184-82 chr2 30527604 30527755 + 2 NA intron (NM_182551, intron 3 of 6) MIR|SINE|MIR 80433 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 330-455 chr6 38878449 38878746 + 2 NA intron (NM_001371, intron 52 of 91) L1MA7|LINE|L1 74510 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 322-239 chr2 46214865 46215088 + 2 NA Intergenic L1M1|LINE|L1 -82431 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 320-600 chr9 130117837 130118107 + 2 NA intron (NM_001136557, intron 16 of 19) intron (NM_001136557, intron 16 of 19) 26247 NR_135124 401554 Hs.522437 NR_135124 ENSG00000196979 GPRACR LncGPR107 GPR107 adjacent cis regulating lncRNA ncRNA 515-127 chr2 143988330 143988742 + 2 NA intron (NM_001354353, intron 7 of 9) MIR|SINE|MIR 51469 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 639-101 chr5 144415223 144415606 + 2 NA intron (NM_001370487, intron 2 of 2) MLT1K|LTR|ERVL-MaLR 210023 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 244-119 chr16 46388608 46388812 + 2 NA Intergenic Intergenic 180387 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 381-355 chr7 55828578 55828865 + 2 NA intron (NM_207366, intron 6 of 9) L1PA15-16|LINE|L1 34031 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 349-519 chr9 86385546 86385734 + 2 NA Intergenic L1M2|LINE|L1 -31230 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 650-51 chr2 40655178 40655564 + 2 NA Intergenic Intergenic -142936 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 306-559 chrX 70050545 70050745 + 2 NA promoter-TSS (NM_001002254) promoter-TSS (NM_001002254) -707 NM_001002254 158835 Hs.661507 NM_001002254 ENSG00000147160 AWAT2 ARAT|DC4|DGAT2L4|MFAT|WS acyl-CoA wax alcohol acyltransferase 2 protein-coding 285-332 chr5 31584129 31584399 + 2 NA Intergenic Intergenic 51963 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 270-386 chr8 87693486 87693735 + 2 NA Intergenic Intergenic 180405 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 265-88 chr13 45551117 45551300 + 2 NA intron (NM_182542, intron 11 of 14) L1MEd|LINE|L1 64531 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 693-113 chrUn_GL000216v2 52078 52600 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 368-285 chr3 24723172 24723454 + 2 NA Intergenic L1MB1|LINE|L1 -106010 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 322-499 chr7 82709211 82709379 + 2 NA Intergenic Intergenic -265339 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 409-2 chr1 70885581 70885897 + 2 NA intron (NR_028293, intron 2 of 4) L2b|LINE|L2 -160767 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 405-3 chr1 60479163 60479505 + 2 NA Intergenic L1MEc|LINE|L1 143351 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 445-265 chr8 33081602 33081866 + 2 NA Intergenic L1MA7|LINE|L1 359899 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 238-114 chr15 53500219 53500383 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 40551 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 448-230 chr5 169370702 169371081 + 2 NA Intergenic L1PB3|LINE|L1 -69752 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 323-245 chr2 56563069 56563337 + 2 NA Intergenic HAL1|LINE|L1 -377433 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 237-109 chr14 70287569 70287749 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -39858 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 241-45 chr10 88166990 88167228 + 2 NA Intergenic Intergenic 303484 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 381-284 chr4 133619103 133619435 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 469975 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 212-242 chr4 104332820 104332996 + 2 NA Intergenic L1ME3|LINE|L1 -158057 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 275-324 chr7 23979545 23979720 + 2 NA Intergenic L1MA8|LINE|L1 269413 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 346-313 chr3 63730702 63731010 + 2 NA Intergenic L1PB|LINE|L1 78181 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 297-359 chr5 22277864 22278065 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -64114 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 396-233 chr3 132215761 132216141 + 2 NA Intergenic Intergenic -101456 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 295-506 chr9 117559879 117560074 + 2 NA Intergenic Intergenic -88630 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 157-117 chr7 15509584 15509677 + 2 NA intron (NM_001004320, intron 3 of 12) L1MA9|LINE|L1 52385 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 335-569 chr9 80018841 80019042 + 2 NA intron (NR_121212, intron 3 of 4) intron (NR_121212, intron 3 of 4) 43918 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 125-38 chr3 153088791 153088875 + 2 NA Intergenic L1PA6|LINE|L1 -73393 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 526-22 chr10 57560847 57561216 + 2 NA Intergenic L1MA2|LINE|L1 -256472 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 113-25 chr19 29090663 29090750 + 2 NA Intergenic L2|LINE|L2 88151 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 378-310 chr4 64661179 64661418 + 2 NA Intergenic L1ME3B|LINE|L1 -251838 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 762-72 chr8 84753449 84753856 + 2 NA intron (NM_001287244, intron 1 of 7) MSTA|LTR|ERVL-MaLR 47725 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 532-207 chr5 113907977 113908391 + 2 NA Intergenic AluSc|SINE|Alu 394490 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 232-383 chr8 123900196 123900337 + 2 NA intron (NM_001039112, intron 1 of 40) L1PB1|LINE|L1 48279 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 321-101 chr11 79700057 79700278 + 2 NA Intergenic L1MEf|LINE|L1 -259137 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 393-77 chr13 23210646 23210906 + 2 NA intron (NM_000231, intron 2 of 7) intron (NM_000231, intron 2 of 7) 29855 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 520-222 chr4 163431099 163431460 + 2 NA Intergenic Intergenic 42475 NM_032136 84076 Hs.303923 NM_032136 ENSG00000151005 TKTL2 - transketolase like 2 protein-coding 317-499 chr8 120657305 120657522 + 2 NA intron (NM_021021, intron 2 of 6) MER117|DNA|hAT-Charlie -103840 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 381-292 chr5 4017254 4017551 + 2 NA Intergenic Intergenic 421570 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 572-170 chr8 104019884 104020271 + 2 NA intron (NR_145710, intron 24 of 29) intron (NR_145710, intron 24 of 29) 200857 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 609-108 chr5 116341352 116341786 + 2 NA Intergenic L1ME4b|LINE|L1 33001 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 271-160 chr17 34970201 34970456 + 2 NA Intergenic Intergenic 8788 NM_052857 91603 Hs.413678 NM_052857 ENSG00000198783 ZNF830 CCDC16|OMCG1 zinc finger protein 830 protein-coding 391-128 chr16 60752671 60753020 + 2 NA Intergenic Intergenic 302921 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 513-63 chr12 127213263 127213620 + 2 NA Intergenic LTR16E1|LTR|ERVL 70842 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 235-286 chr5 62140351 62140536 + 2 NA Intergenic Intergenic -165719 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 313-78 chr11 31277380 31277583 + 2 NA intron (NM_181807, intron 7 of 8) L1ME2|LINE|L1 92258 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 928-5 chr14 32801088 32801746 + 2 NA intron (NM_004274, intron 12 of 13) L1MCa|LINE|L1 -137462 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 325-90 chr10 128854475 128854712 + 2 NA Intergenic Intergenic -58240 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 233-334 chr6 67801645 67801820 + 2 NA Intergenic L1MA3|LINE|L1 -253619 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 435-46 chr11 21598177 21598518 + 2 NA Intergenic L1ME3B|LINE|L1 -594738 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 412-91 chr14 56168319 56168625 + 2 NA intron (NM_021255, intron 1 of 5) L1MA1|LINE|L1 50061 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 328-480 chr5 157958705 157958956 + 2 NA Intergenic AluSx|SINE|Alu -99685 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 366-14 chr1 96590941 96591192 + 2 NA Intergenic MER31-int|LTR|ERV1 -130539 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 118-16 chr12 73654316 73654401 + 2 NA Intergenic L1M5|LINE|L1 495168 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 240-280 chr3 19627161 19627381 + 2 NA Intergenic Intergenic 306946 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 402-156 chr2 108041846 108042133 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 10766 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 367-33 chr1 203103187 203103398 + 2 NA Intergenic Intergenic -17280 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 268-170 chr19 37750451 37750674 + 2 NA intron (NM_001172690, intron 4 of 4) L1MB7|LINE|L1 29028 NM_001172692 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 376-48 chr10 56280606 56280931 + 2 NA Intergenic Intergenic 80491 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 361-284 chr3 70508702 70508913 + 2 NA Intergenic Intergenic -196169 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 127-22 chr11 134148296 134148399 + 2 NA intron (NM_001205329, intron 5 of 7) intron (NM_001205329, intron 5 of 7) 3016 NR_145790 109623486 NR_145790 SNORD153 - small nucleolar RNA, C/D box 153 snoRNA 355-501 chr8 87118533 87118774 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 252238 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 369-64 chr11 82665613 82665832 + 2 NA Intergenic Intergenic 68142 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 228-25 chr1 192761756 192761920 + 2 NA Intergenic Intergenic 45510 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 510-159 chr2 225639900 225640252 + 2 NA intron (NM_001371273, intron 6 of 7) intron (NM_001371273, intron 6 of 7) 239190 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 347-194 chr19 57452226 57452414 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 4419 NM_020633 57191 Hs.677423 NM_020633 ENSG00000178201 VN1R1 V1RL1|VNR19I1|ZVNH1|ZVNR1 vomeronasal 1 receptor 1 protein-coding 133-38 chr2 191651180 191651267 + 2 NA Intergenic L2c|LINE|L2 -26849 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 210-246 chr6 66206284 66206434 + 2 NA Intergenic Intergenic 418480 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 375-380 chr7 52975639 52975970 + 2 NA Intergenic L1M5|LINE|L1 -59829 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 192-38 chr11 47580448 47580605 + 2 NA exon (NM_004551, exon 3 of 7) exon (NM_004551, exon 3 of 7) 1452 NM_004551 4722 Hs.502528 NM_004551 ENSG00000213619 NDUFS3 CI-30|MC1DN8 NADH:ubiquinone oxidoreductase core subunit S3 protein-coding 331-557 chr9 82295976 82296155 + 2 NA Intergenic HAL1|LINE|L1 307293 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 304-66 chr10 122756911 122757069 + 2 NA non-coding (NR_003570, exon 1 of 28) non-coding (NR_003570, exon 1 of 28) 296 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 402-176 chr2 178972198 178972540 + 2 NA intron (NM_001316745, intron 4 of 11) intron (NM_001316745, intron 4 of 11) 77768 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 265-204 chr2 202608352 202608515 + 2 NA Intergenic Intergenic -26536 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 518-297 chr8 77668897 77669259 + 2 NA Intergenic MIRc|SINE|MIR 218381 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 356-440 chr7 5136682 5136995 + 2 NA intron (NR_034163, intron 1 of 5) intron (NR_034163, intron 1 of 5) 7708 NR_034163 645700 Hs.690815 NR_034163 ENSG00000159904 ZNF890P - zinc finger protein 890, pseudogene pseudo 222-346 chr7 79114210 79114406 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 105320 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 387-369 chr8 105940633 105940909 + 2 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 119732 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 517-219 chr5 97798611 97799030 + 2 NA Intergenic Intergenic -41938 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 187-49 chr14 69884239 69884347 + 2 NA intron (NM_001034852, intron 1 of 11) L1MA8|LINE|L1 4877 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 177-58 chr15 98323673 98323829 + 2 NA non-coding (NR_146566, exon 3 of 3) non-coding (NR_146566, exon 3 of 3) 7807 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 738-72 chr8 112944717 112945147 + 2 NA intron (NM_001363185, intron 7 of 66) L2|LINE|L2 301439 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 354-55 chr10 67532011 67532304 + 2 NA intron (NM_001127384, intron 4 of 17) intron (NM_001127384, intron 4 of 17) -128747 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 206-49 chr11 79985319 79985476 + 2 NA Intergenic Intergenic -544367 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 271-488 chrX 63486765 63486958 + 2 NA intron (NR_152612, intron 1 of 2) intron (NR_152612, intron 1 of 2) 74234 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 295-347 chr4 65896386 65896550 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -225973 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 247-442 chrX 65315271 65315439 + 2 NA Intergenic L1MEc|LINE|L1 -173380 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 524-293 chrX 107017663 107018041 + 2 NA Intergenic Intergenic -17640 NM_024657 79710 Hs.496544 NM_024657 ENSG00000133131 MORC4 ZCW4|ZCWCC2|dJ75H8.2 MORC family CW-type zinc finger 4 protein-coding 576-4 chr1 111389009 111389383 + 2 NA non-coding (NR_029429, exon 2 of 5) non-coding (NR_029429, exon 2 of 5) 655 NR_029429 441897 Hs.568387 NR_029429 ENSG00000227179 PGCP1 - progastricsin pseudogene 1 pseudo 214-271 chr5 153050295 153050489 + 2 NA Intergenic Intergenic -78043 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 253-334 chr5 90046280 90046521 + 2 NA Intergenic MIR|SINE|MIR -29680 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 283-284 chr3 23462555 23462807 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 259354 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 324-219 chr18 1962274 1962560 + 2 NA Intergenic MIR|SINE|MIR -602788 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 661-6 chr10 56767897 56768347 + 2 NA Intergenic LOR1-int|LTR|ERV1 -406849 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 262-186 chr19 12538882 12539023 + 2 NA intron (NM_144976, intron 1 of 3) AluSx1|SINE|Alu 12530 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 254-456 chrX 146391269 146391449 + 2 NA Intergenic L1M1|LINE|L1 -363487 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 327-383 chr5 8173197 8173447 + 2 NA Intergenic Intergenic 284242 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 353-237 chr2 25465405 25465714 + 2 NA intron (NM_033147, intron 10 of 19) L2a|LINE|L2 -122969 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 217-62 chr11 26726852 26727012 + 2 NA Intergenic Intergenic -4872 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 644-23 chr14 84215981 84216479 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -1055702 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 416-129 chr15 63373715 63374068 + 2 NA intron (NR_135511, intron 2 of 9) intron (NR_135511, intron 2 of 9) 7955 NM_001218 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 363-174 chr17 19567975 19568189 + 2 NA intron (NM_018242, intron 14 of 16) intron (NM_018242, intron 14 of 16) 10522 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 321-152 chr12 133041526 133041698 + 2 NA intron (NM_001127372, intron 2 of 4) intron (NM_001127372, intron 2 of 4) 4030 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 195-45 chr12 1385021 1385198 + 2 NA intron (NR_027948, intron 16 of 19) intron (NR_027948, intron 16 of 19) -115382 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 357-324 chr5 5760882 5761135 + 2 NA Intergenic AluSx|SINE|Alu 338331 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 273-433 chr7 114245610 114245837 + 2 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 159396 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 254-287 chr4 151626417 151626664 + 2 NA intron (NM_001109977, intron 7 of 13) MER124|DNA?|DNA? 134467 NM_004564 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 280-272 chr3 177861513 177861741 + 2 NA intron (NR_110826, intron 1 of 2) L1M3b|LINE|L1 44762 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 421-67 chr13 79513962 79514298 + 2 NA intron (NM_019080, intron 1 of 7) intron (NM_019080, intron 1 of 7) -32899 NR_046685 100874208 Hs.602801 NR_046685 ENSG00000232132 NDFIP2-AS1 - NDFIP2 antisense RNA 1 ncRNA 200-224 chr5 107176784 107176938 + 2 NA Intergenic L1MA4|LINE|L1 -165847 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 197-103 chr2 132965426 132965572 + 2 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 49942 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 406-183 chr3 37694031 37694402 + 2 NA intron (NM_002207, intron 18 of 27) intron (NM_002207, intron 18 of 27) 167564 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 347-316 chr3 116975027 116975339 + 2 NA Intergenic Intergenic 53752 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 321-285 chr2 59613320 59613557 + 2 NA Intergenic L1MB7|LINE|L1 395730 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 294-464 chr8 65085970 65086172 + 2 NA Intergenic ERVL47-int|LTR|ERVL 94269 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 372-388 chr5 13755338 13755544 + 2 NA intron (NM_001369, intron 61 of 78) intron (NM_001369, intron 61 of 78) 189039 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 583-105 chr21 30906461 30907022 + 2 NA Intergenic L1ME3|LINE|L1 -25161 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 378-219 chr2 39936783 39937128 + 2 NA intron (NR_038441, intron 2 of 4) L1PA16|LINE|L1 19321 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 278-288 chr3 147011561 147011767 + 2 NA Intergenic Intergenic 89741 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 304-11 chr1 87543521 87543821 + 2 NA Intergenic L1MA3|LINE|L1 -172016 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 502-156 chr20 42179371 42179778 + 2 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -505909 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 543-50 chr11 50423346 50423767 + 2 NA Intergenic ALR/Alpha|Satellite|centr 14409 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 335-511 chr7 86999833 87000029 + 2 NA intron (NM_001142749, intron 1 of 21) intron (NM_001142749, intron 1 of 21) -34032 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 555-201 chr8 73713479 73713816 + 2 NA intron (NM_001164380, intron 3 of 14) L2c|LINE|L2 33193 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 258-125 chr14 57526391 57526618 + 2 NA Intergenic L1PB1|LINE|L1 -32647 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 238-145 chr18 6993299 6993471 + 2 NA intron (NM_005559, intron 35 of 62) intron (NM_005559, intron 35 of 62) 38708 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 209-160 chr2 122530351 122530505 + 2 NA Intergenic AluSx1|SINE|Alu 543053 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 244-313 chr5 164043788 164043967 + 2 NA Intergenic Intergenic 423525 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 299-153 chr16 11215701 11215954 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 40355 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 577-203 chr9 81391731 81392163 + 2 NA Intergenic Intergenic 297588 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 272-120 chr14 72862750 72862995 + 2 NA intron (NM_001280542, intron 1 of 10) L2a|LINE|L2 29777 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 305-425 chr5 28370127 28370325 + 2 NA Intergenic Intergenic -82561 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 373-442 chrX 69099365 69099681 + 2 NA Intergenic Intergenic 65930 NM_001032396 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 350-555 chr9 88286889 88287084 + 2 NA Intergenic BC200|scRNA|scRNA -101458 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 249-364 chr6 149038498 149038724 + 2 NA intron (NM_005715, intron 7 of 7) MLT1C|LTR|ERVL-MaLR -5950 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 222-200 chr2 204908958 204909165 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 363586 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 586-151 chr8 67009713 67010159 + 2 NA TTS (NM_001348563) TTS (NM_001348563) 18615 NM_001348563 286187 Hs.583933 NM_001013626 ENSG00000178125 PPP1R42 LRRC67|TLLR|TLRR|dtr protein phosphatase 1 regulatory subunit 42 protein-coding 212-323 chr8 72981315 72981496 + 2 NA Intergenic MER5C|DNA|hAT-Charlie -27459 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 277-468 chrX 88790732 88790971 + 2 NA Intergenic L1MB1|LINE|L1 43626 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 488-296 chr9 118395312 118395791 + 2 NA Intergenic Intergenic -284120 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 234-358 chr7 31952771 31952982 + 2 NA intron (NM_001322059, intron 3 of 17) L2c|LINE|L2 117531 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 542-227 chr8 118330990 118331367 + 2 NA intron (NM_001101676, intron 4 of 4) HAL1b|LINE|L1 -219359 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 393-372 chr8 136711190 136711514 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 180554 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 306-124 chr13 46865081 46865273 + 2 NA intron (NM_001165947, intron 2 of 2) intron (NM_001165947, intron 2 of 2) 13037 NR_103752 100874082 Hs.569281 NR_046612 ENSG00000224517 HTR2A-AS1 - HTR2A antisense RNA 1 ncRNA 212-16 chr1 175297652 175297823 + 2 NA Intergenic MER65-int|LTR|ERV1 -104750 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 333-335 chr22 46024157 46024365 + 2 NA Intergenic Intergenic 17645 NR_027240 730668 Hs.640071 NR_027240 ENSG00000280424 LOC730668 - dynein heavy chain -like pseudogene pseudo 296-395 chr6 21178058 21178221 + 2 NA intron (NM_017774, intron 13 of 15) intron (NM_017774, intron 13 of 15) 333753 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 220-21 chr1 163434602 163434735 + 2 NA Intergenic Intergenic -11477 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 342-423 chr5 120688543 120688837 + 2 NA Intergenic Intergenic 157226 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 367-91 chr12 63295946 63296165 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -143245 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 416-268 chr5 24494497 24494763 + 2 NA intron (NM_001317222, intron 8 of 10) intron (NM_001317222, intron 8 of 10) 150348 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 157-103 chr5 35728618 35728730 + 2 NA intron (NM_024867, intron 21 of 36) intron (NM_024867, intron 21 of 36) 110811 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 254-222 chr20 18020974 18021165 + 2 NA Intergenic Intergenic 36847 NM_021220 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 369-421 chr8 129191076 129191391 + 2 NA Intergenic Intergenic 50007 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 316-547 chr8 80515987 80516261 + 2 NA intron (NM_001105539, intron 3 of 5) FLAM_C|SINE|Alu 29898 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 290-262 chr22 27422792 27422950 + 2 NA Intergenic MIR3|SINE|MIR 112220 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 320-457 chr5 119948343 119948618 + 2 NA Intergenic Intergenic 318921 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 231-204 chr22 27256631 27256776 + 2 NA Intergenic MIR|SINE|MIR -32024 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 217-143 chr16 58376000 58376213 + 2 NA Intergenic L1ME3A|LINE|L1 -16365 NM_022770 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 215-128 chr18 71891895 71892066 + 2 NA Intergenic L1ME1|LINE|L1 -109754 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 307-282 chr21 27812745 27812974 + 2 NA Intergenic Intergenic 90480 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 220-184 chr2 168985529 168985686 + 2 NA intron (NM_003742, intron 10 of 27) L1PB1|LINE|L1 45717 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 385-255 chr3 172751348 172751636 + 2 NA intron (NM_001349099, intron 1 of 24) MIR|SINE|MIR 490 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 516-81 chr15 27403359 27403721 + 2 NA intron (NM_001270873, intron 5 of 5) L1MEg|LINE|L1 -242221 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 154-81 chr4 76328003 76328107 + 2 NA intron (NM_001042784, intron 21 of 23) intron (NM_001042784, intron 21 of 23) 22029 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 771-9 chr10 41764278 41764823 + 2 NA Intergenic ALR/Alpha|Satellite|centr 603495 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 226-256 chr4 60955855 60955992 + 2 NA Intergenic L2a|LINE|L2 33304 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 457-66 chr14 53343855 53344126 + 2 NA Intergenic Intergenic 190636 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 425-215 chr4 148569780 148570072 + 2 NA Intergenic MIR|SINE|MIR -125228 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 506-105 chr16 68573505 68573890 + 2 NA intron (NM_001305204, intron 4 of 4) intron (NM_001305204, intron 4 of 4) 34406 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 307-94 chr11 125666122 125666322 + 2 NA intron (NM_001330427, intron 12 of 12) L1MEf|LINE|L1 14625 NM_020107 56 Hs.169222 NM_001612 ENSG00000134940 ACRV1 D11S4365|SP-10|SPACA2 acrosomal vesicle protein 1 protein-coding 453-168 chr3 112551847 112552193 + 2 NA intron (NM_001278712, intron 3 of 10) intron (NM_001278712, intron 3 of 10) -9300 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 324-505 chr7 94056359 94056640 + 2 NA Intergenic Intergenic -52144 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 460-201 chr3 94512403 94512690 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -425717 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 254-320 chr5 123592940 123593188 + 2 NA intron (NM_001364145, intron 8 of 10) intron (NM_001364145, intron 8 of 10) 47647 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 377-69 chr11 62336602 62336897 + 2 NA promoter-TSS (NM_001083926) promoter-TSS (NM_001083926) -699 NM_025080 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 375-67 chr11 8302556 8302757 + 2 NA Intergenic L1MEi|LINE|L1 -33869 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 459-112 chr17 71209626 71210024 + 2 NA Intergenic Ricksha_0|DNA|MULE-MuDR -7646 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 422-132 chr19 4614845 4615095 + 2 NA Intergenic Intergenic -24546 NM_152362 126282 Hs.465643 NM_152362 ENSG00000185361 TNFAIP8L1 TIPE1 TNF alpha induced protein 8 like 1 protein-coding 456-159 chr2 77862166 77862467 + 2 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -53618 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 338-178 chr15 27860126 27860412 + 2 NA intron (NM_001300984, intron 20 of 22) L2a|LINE|L2 239046 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 421-186 chr3 77934047 77934374 + 2 NA Intergenic Intergenic 114753 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 187-142 chr5 122215018 122215177 + 2 NA Intergenic L1MB1|LINE|L1 54921 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 356-58 chr10 81831694 81831892 + 2 NA Intergenic Intergenic -43401 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 306-294 chr3 5449273 5449484 + 2 NA Intergenic L1M4|LINE|L1 -199123 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 264-60 chr10 103750436 103750598 + 2 NA intron (NR_038940, intron 2 of 2) MER5A|DNA|hAT-Charlie 3738 NR_038940 100505839 Hs.655149 NR_038940 ENSG00000280693 SH3PXD2A-AS1 - SH3PXD2A antisense RNA 1 ncRNA 314-67 chr10 58657066 58657309 + 2 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -57828 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 375-145 chr15 80407521 80407773 + 2 NA intron (NM_014862, intron 1 of 18) intron (NM_014862, intron 1 of 18) 3265 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 729-9 chr10 66884457 66884862 + 2 NA intron (NM_001127384, intron 7 of 17) MLT1F1|LTR|ERVL-MaLR -41377 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 330-459 chr6 55354413 55354693 + 2 NA intron (NM_207410, intron 5 of 8) intron (NM_207410, intron 5 of 8) 27084 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 297-18 chr1 95217774 95217994 + 2 NA intron (NR_125949, intron 2 of 3) intron (NR_125949, intron 2 of 3) 16098 NR_125949 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 374-53 chr11 74537127 74537329 + 2 NA Intergenic L1M4b|LINE|L1 -43504 NM_001144869 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 347-341 chr4 44514391 44514674 + 2 NA Intergenic Intergenic -65723 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 517-2 chr1 41286790 41287206 + 2 NA Intergenic MIRc|SINE|MIR -44692 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 347-86 chr12 4604463 4604637 + 2 NA promoter-TSS (NM_001282286) promoter-TSS (NM_001282286) -313 NM_001282286 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 454-256 chr5 37969054 37969436 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 20754 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 313-426 chr5 42785536 42785693 + 2 NA intron (NM_001134848, intron 6 of 8) L1PA17|LINE|L1 26278 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 304-231 chr19 57624460 57624653 + 2 NA 3' UTR (NM_003435, exon 3 of 3) 3' UTR (NM_003435, exon 3 of 3) -8611 NM_001265598 10520 Hs.590977 NM_006385 ENSG00000121417 ZNF211 C2H2-25|CH2H2-25|ZNF-25 zinc finger protein 211 protein-coding 533-178 chr5 44464077 44464552 + 2 NA Intergenic L1PA15|LINE|L1 45968 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 202-195 chr4 162398906 162399056 + 2 NA Intergenic Intergenic -234947 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 456-215 chr4 11778965 11779226 + 2 NA Intergenic AluSz|SINE|Alu -4083 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 290-364 chr5 120192781 120192951 + 2 NA Intergenic Charlie20a|DNA|hAT-Charlie -271412 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 250-126 chr14 72828860 72829104 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 63667 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 601-13 chr10 43207899 43208415 + 2 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) 21582 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 175-30 chr11 8763338 8763455 + 2 NA intron (NM_005418, intron 4 of 22) L1ME3A|LINE|L1 -5382 NR_120590 102724784 Hs.613276 NR_120590 LOC102724784 - uncharacterized LOC102724784 ncRNA 244-58 chr11 87818447 87818672 + 2 NA Intergenic MIR|SINE|MIR -99148 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 275-224 chr20 40364571 40364802 + 2 NA Intergenic Intergenic 324550 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 385-321 chr6 40612876 40613237 + 2 NA Intergenic Intergenic -25692 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 316-504 chr7 14421311 14421556 + 2 NA intron (NM_001350717, intron 20 of 24) MIRc|SINE|MIR 420017 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 328-353 chr3 72733210 72733376 + 2 NA Intergenic Intergenic -69044 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 302-198 chr2 18634211 18634403 + 2 NA Intergenic L1PA11|LINE|L1 -44727 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 338-421 chr5 30464655 30464967 + 2 NA Intergenic L1M3c|LINE|L1 584251 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 301-256 chr20 50647222 50647473 + 2 NA intron (NR_111906, intron 2 of 2) intron (NR_111906, intron 2 of 2) 1876 NR_111906 100506175 Hs.658270 NR_111906 ENSG00000234693 LOC100506175 - uncharacterized LOC100506175 ncRNA 209-240 chr4 163252221 163252355 + 2 NA Intergenic L2c|LINE|L2 80308 NM_000909 4886 Hs.519057 NM_000909 ENSG00000164128 NPY1R NPY1-R|NPYR neuropeptide Y receptor Y1 protein-coding 328-259 chr2 55750386 55750559 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -56628 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 341-193 chr16 81227841 81228132 + 2 NA Intergenic L2c|LINE|L2 -7592 NM_052892 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 292-448 chr8 133410020 133410201 + 2 NA Intergenic AluSg|SINE|Alu -112806 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 319-491 chr7 10843022 10843197 + 2 NA Intergenic L2c|LINE|L2 -63165 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 321-167 chr14 47993934 47994245 + 2 NA Intergenic Intergenic -199075 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 355-340 chr3 161987845 161988137 + 2 NA Intergenic Intergenic 491183 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 298-127 chr14 83878516 83878712 + 2 NA Intergenic L2a|LINE|L2 1235982 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 461-78 chr14 79029181 79029516 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -170634 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 446-73 chr12 20666886 20667174 + 2 NA intron (NM_000921, intron 15 of 15) L1MA4A|LINE|L1 -28325 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 273-77 chr11 45789559 45789801 + 2 NA Intergenic L1ME1|LINE|L1 -14392 NM_001145266 55343 Hs.12211 NM_018389 ENSG00000181830 SLC35C1 CDG2C|FUCT1 solute carrier family 35 member C1 protein-coding 414-154 chr2 79471430 79471687 + 2 NA Intergenic AluY|SINE|Alu 29286 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 725-53 chr6 159239045 159239587 + 2 NA intron (NM_032532, intron 13 of 22) intron (NM_032532, intron 13 of 22) -69309 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 286-167 chr18 1958562 1958733 + 2 NA Intergenic L1MB4|LINE|L1 -599018 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 388-180 chr20 18910168 18910510 + 2 NA Intergenic L2a|LINE|L2 -80136 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 403-223 chr4 73879310 73879676 + 2 NA Intergenic L1PA13|LINE|L1 10100 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 510-201 chr4 38458225 38458563 + 2 NA intron (NR_110951, intron 2 of 7) intron (NR_110951, intron 2 of 7) -51373 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 543-20 chr1 211001945 211002449 + 2 NA intron (NM_002238, intron 6 of 10) L1PA5|LINE|L1 131177 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 254-300 chr5 19829338 19829513 + 2 NA intron (NM_001349559, intron 3 of 12) L1PA15|LINE|L1 56847 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 397-11 chr1 170939843 170940198 + 2 NA intron (NM_001163629, intron 1 of 21) ERVL-B4-int|LTR|ERVL 4486 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 203-83 chr16 80496435 80496589 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -44222 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 336-329 chr20 53066709 53066880 + 2 NA intron (NM_173485, intron 1 of 2) AluSc|SINE|Alu 94436 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 355-144 chr13 83540007 83540192 + 2 NA Intergenic Intergenic 342294 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 469-22 chr1 210756502 210756857 + 2 NA intron (NM_002238, intron 10 of 10) intron (NM_002238, intron 10 of 10) 376695 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 379-58 chr11 81748288 81748559 + 2 NA Intergenic Intergenic 142413 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 345-239 chr2 230477 230680 + 2 NA non-coding (NR_104227, exon 9 of 11) non-coding (NR_104227, exon 9 of 11) 25762 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 262-349 chr5 111323280 111323519 + 2 NA intron (NM_001744, intron 1 of 10) Tigger5b|DNA|TcMar-Tigger 99015 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 237-214 chr20 60672417 60672600 + 2 NA Intergenic Intergenic 107946 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 231-206 chr22 27823221 27823379 + 2 NA Intergenic L1MB5|LINE|L1 -21544 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 377-6 chr1 57247328 57247636 + 2 NA intron (NM_001353980, intron 5 of 5) MSTA|LTR|ERVL-MaLR 175630 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 153-37 chr16 17178282 17178422 + 2 NA intron (NM_022166, intron 5 of 11) intron (NM_022166, intron 5 of 11) 43848 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 340-92 chr11 115646767 115647086 + 2 NA Intergenic Tigger1a_Art|DNA|TcMar-Tigger 87836 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 233-211 chr21 24544463 24544634 + 2 NA intron (NR_135519, intron 2 of 2) intron (NR_135519, intron 2 of 2) 115808 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 185-49 chr12 108206881 108207035 + 2 NA intron (NM_001304447, intron 4 of 9) intron (NM_001304447, intron 4 of 9) 75172 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 358-466 chr8 46493563 46493874 + 2 NA Intergenic ALR/Alpha|Satellite|centr 123925 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 244-307 chr5 116415108 116415298 + 2 NA Intergenic Intergenic -32295 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 336-192 chr16 17337461 17337714 + 2 NA intron (NM_022166, intron 2 of 11) intron (NM_022166, intron 2 of 11) 133373 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 161-16 chr11 35858340 35858434 + 2 NA Intergenic Intergenic -85594 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 391-311 chr6 91312842 91313172 + 2 NA Intergenic Intergenic -208653 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 261-54 chr10 131362528 131362725 + 2 NA Intergenic L2c|LINE|L2 -50905 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 313-451 chr5 157174835 157175006 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -5976 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 352-169 chr16 27416001 27416262 + 2 NA intron (NM_181079, intron 2 of 9) (ATTT)n|Simple_repeat|Simple_repeat -11140 NM_021798 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 202-146 chr21 24978166 24978308 + 2 NA intron (NR_046198, intron 2 of 3) MER110-int|LTR|ERV1 137687 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 265-131 chr16 7976328 7976486 + 2 NA Intergenic L1MA7|LINE|L1 613431 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 442-75 chr14 52115474 52115891 + 2 NA Intergenic Intergenic -46623 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 304-65 chr10 121048218 121048407 + 2 NA Intergenic L1ME3C|LINE|L1 196950 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 306-453 chr7 2949340 2949583 + 2 NA intron (NM_001324281, intron 3 of 25) L1MB8|LINE|L1 94406 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 559-101 chr2 146220329 146220741 + 2 NA Intergenic AluY|SINE|Alu -366522 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 508-144 chr3 36922853 36923316 + 2 NA intron (NM_001329998, intron 1 of 23) MER83|LTR|ERV1 21970 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 273-160 chr16 60556020 60556215 + 2 NA Intergenic Intergenic -196324 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 253-160 chr17 66090038 66090286 + 2 NA intron (NM_001302891, intron 6 of 24) L1MA8|LINE|L1 101730 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 337-519 chr7 48212331 48212597 + 2 NA intron (NM_152701, intron 3 of 61) L1ME1|LINE|L1 41006 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 299-327 chr4 64418559 64418779 + 2 NA Intergenic Intergenic -9209 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 638-24 chr11 50394147 50394592 + 2 NA Intergenic ALR/Alpha|Satellite|centr -14778 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 383-249 chr3 60111116 60111464 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -30381 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 843-2 chr10 43613375 43613941 + 2 NA intron (NM_145312, intron 4 of 4) L1ME3A|LINE|L1 7220 NM_145312 220992 Hs.147440 NM_145312 ENSG00000198298 ZNF485 - zinc finger protein 485 protein-coding 189-61 chr15 91420541 91420707 + 2 NA Intergenic L1MA3|LINE|L1 -42715 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 132-81 chr7 87324903 87325002 + 2 NA TTS (NR_015381) TTS (NR_015381) 20540 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 312-249 chr2 107089704 107089983 + 2 NA Intergenic Intergenic -202734 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 531-215 chr6 54588781 54589108 + 2 NA Intergenic LTR67B|LTR|ERVL -257827 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 670-77 chr3 77687312 77687977 + 2 NA Intergenic Intergenic 361319 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 297-460 chr8 59567183 59567387 + 2 NA Intergenic L1PB1|LINE|L1 448075 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 329-603 chr9 24745667 24745968 + 2 NA Intergenic Intergenic -199920 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 390-11 chr1 110680882 110681262 + 2 NA Intergenic Intergenic -6132 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 504-159 chr21 45205883 45206319 + 2 NA intron (NR_027674, intron 9 of 11) intron (NR_027674, intron 9 of 11) -28239 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 347-466 chr7 42443826 42444131 + 2 NA Intergenic L1PA15|LINE|L1 -206769 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 971-19 chr8 144940263 144941022 + 2 NA intron (NM_006958, intron 2 of 2) L1MB5|LINE|L1 10238 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 312-380 chr4 94845078 94845344 + 2 NA intron (NM_001203, intron 1 of 12) intron (NM_001203, intron 1 of 12) 87256 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 560-199 chrX 43453235 43453687 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -201446 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 565-111 chr3 3954982 3955365 + 2 NA Intergenic Intergenic -154298 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 514-107 chr16 6366258 6366678 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 346765 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 311-85 chr11 92791647 92791816 + 2 NA intron (NM_001008781, intron 7 of 24) L3b|LINE|CR1 123897 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 360-361 chr5 42344627 42344889 + 2 NA Intergenic L1MA4A|LINE|L1 -78681 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 596-53 chr13 87774789 87775134 + 2 NA Intergenic Intergenic 35559 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 349-125 chr12 39887110 39887337 + 2 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 218858 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 361-482 chr9 96741522 96741808 + 2 NA Intergenic Intergenic 15844 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 221-303 chr8 111536656 111536796 + 2 NA Intergenic Intergenic 160087 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 520-274 chr7 23832332 23832821 + 2 NA TTS (NM_001260504) TTS (NM_001260504) 122357 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 270-74 chr12 16664647 16664898 + 2 NA Intergenic L2|LINE|L2 -56558 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 381-249 chr3 68235181 68235402 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 231044 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 814-31 chr2 14807541 14808026 + 2 NA Intergenic MIRb|SINE|MIR 175066 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 200-233 chr6 50540212 50540381 + 2 NA Intergenic MIR3|SINE|MIR -173248 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 283-149 chr15 61613230 61613486 + 2 NA Intergenic Intergenic -116560 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 466-34 chr10 88322716 88323130 + 2 NA intron (NM_018363, intron 5 of 6) L1PA17|LINE|L1 260395 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 239-147 chr18 47707783 47707962 + 2 NA Intergenic MLT2B1|LTR|ERVL 222787 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 229-73 chr11 101601380 101601556 + 2 NA Intergenic Intergenic -17461 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 278-412 chr8 59345558 59345747 + 2 NA Intergenic Intergenic 226442 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 270-36 chr10 53053550 53053738 + 2 NA Intergenic Intergenic -281944 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 317-380 chr5 28949734 28949963 + 2 NA Intergenic Intergenic 22978 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 310-248 chr2 100628040 100628201 + 2 NA Intergenic Intergenic 24381 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 736-26 chr14 96168901 96169562 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -35567 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 612-137 chr8 33829498 33829859 + 2 NA Intergenic L1PB4|LINE|L1 -229572 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 434-159 chr2 187279652 187280022 + 2 NA Intergenic L1M3|LINE|L1 168415 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 312-488 chr7 62923457 62923675 + 2 NA Intergenic ALR/Alpha|Satellite|centr 380490 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 218-280 chr5 153869256 153869430 + 2 NA Intergenic Intergenic 29644 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 154-90 chr5 131882368 131882496 + 2 NA intron (NM_001303622, intron 8 of 12) intron (NM_001303622, intron 8 of 12) 63231 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 580-145 chr4 121171445 121171852 + 2 NA intron (NM_001128843, intron 3 of 12) intron (NM_001128843, intron 3 of 12) -7327 NM_024873 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 248-13 chr1 117271701 117271890 + 2 NA Intergenic LTR51|LTR|ERV1 -23671 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 227-323 chr6 127367712 127367905 + 2 NA Intergenic L1MB7|LINE|L1 -24199 NM_018479 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 487-182 chr3 43833907 43834276 + 2 NA Intergenic Intergenic -142497 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 464-245 chr7 79238846 79239209 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -213930 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 404-308 chr8 48542466 48542769 + 2 NA Intergenic Intergenic -8950 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 289-135 chr14 38260469 38260712 + 2 NA Intergenic L1P4a|LINE|L1 -4497 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 638-159 chr8 113180417 113180822 + 2 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 196533 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 861-15 chr2 94505743 94506429 + 2 NA Intergenic ALR/Alpha|Satellite|centr 81097 NR_024443 100133920 Hs.645503 NR_024443 ENSG00000261522 LOC100133920 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene pseudo 476-69 chr12 129701824 129702259 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 201984 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 360-407 chr6 65147296 65147504 + 2 NA intron (NM_001292009, intron 12 of 43) L1MD|LINE|L1 -154018 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 574-76 chr2 71684784 71685166 + 2 NA intron (NM_001130985, intron 54 of 54) intron (NM_001130985, intron 54 of 54) 218276 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 326-135 chr13 50096712 50096889 + 2 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 14631 NR_109974 10301 Hs.591229 NM_005887 ENSG00000176124 DLEU1 BCMS|BCMS1|DLB1|DLEU2|LEU1|LEU2|LINC00021|NCRNA00021|XTP6 deleted in lymphocytic leukemia 1 ncRNA 251-240 chr3 108315344 108315496 + 2 NA intron (NM_001282557, intron 1 of 9) intron (NM_001282557, intron 1 of 9) 3635 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 364-353 chr5 106176375 106176659 + 2 NA Intergenic L1MB4|LINE|L1 834497 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 352-295 chr21 27249945 27250202 + 2 NA Intergenic Intergenic -282985 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 273-344 chr5 10799021 10799285 + 2 NA Intergenic L1MC5|LINE|L1 -37919 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 358-505 chr8 139961068 139961261 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 139371 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 394-107 chr14 72770030 72770239 + 2 NA intron (NM_001280544, intron 2 of 9) L1MC5|LINE|L1 122515 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 415-18 chr1 199771609 199771918 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -255947 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 319-129 chr13 90677926 90678113 + 2 NA Intergenic Intergenic 184731 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 310 chr1 14839220 14839391 + 2 NA intron (NM_201628, intron 1 of 14) MIR|SINE|MIR -84824 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 343-119 chr13 23048578 23048839 + 2 NA Intergenic L1P4|LINE|L1 -132213 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 616-117 chr4 31191259 31191840 + 2 NA intron (NR_125935, intron 2 of 4) L2c|LINE|L2 20405 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 786-25 chr17 52747450 52748005 + 2 NA Intergenic Intergenic -114394 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 220-278 chr5 26953750 26953917 + 2 NA intron (NM_016279, intron 2 of 11) L2|LINE|L2 84753 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 229-290 chr5 7081741 7081923 + 2 NA Intergenic Intergenic 187522 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 392-309 chr7 56661703 56661940 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -123691 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 467-80 chr14 53139725 53140130 + 2 NA intron (NM_030637, intron 1 of 11) L1MCc|LINE|L1 13396 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 220-109 chr14 66547427 66547558 + 2 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 40085 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 429-94 chr14 81908155 81908418 + 2 NA Intergenic MIR3|SINE|MIR -165148 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 370-123 chr12 129400349 129400632 + 2 NA intron (NM_133448, intron 3 of 8) MER107|DNA|hAT-Charlie 191889 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 179-29 chr16 48372085 48372255 + 2 NA intron (NM_003031, intron 1 of 1) intron (NM_003031, intron 1 of 1) -6283 NM_001006610 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 220-290 chr5 92055978 92056124 + 2 NA Intergenic L1MC1|LINE|L1 -672734 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 322-36 chr1 199625662 199625950 + 2 NA Intergenic Intergenic -401904 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 752-82 chr9 113004461 113004985 + 2 NA intron (NM_001101338, intron 2 of 4) MLT1A0|LTR|ERVL-MaLR 7469 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 316-250 chr2 16029794 16030033 + 2 NA Intergenic L1ME4a|LINE|L1 -20514 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 359-77 chr10 130047220 130047399 + 2 NA Intergenic Intergenic -58700 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 278-247 chr20 10970246 10970487 + 2 NA Intergenic Intergenic -56178 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 223-21 chr1 189821163 189821339 + 2 NA Intergenic Intergenic 654759 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 704-52 chr3 26283493 26284029 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -339045 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 398-344 chr8 51253921 51254267 + 2 NA Intergenic L2|LINE|L2 555351 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 336-70 chr10 79015349 79015635 + 2 NA intron (NR_015429, intron 3 of 7) intron (NR_015429, intron 3 of 7) 51956 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 248-98 chr13 58386880 58387043 + 2 NA Intergenic L1MA8|LINE|L1 -153844 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 330-293 chr2 139597451 139597643 + 2 NA Intergenic L1M2|LINE|L1 700223 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 704-13 chr11 65059396 65059995 + 2 NA Intergenic (CATC)n|Simple_repeat|Simple_repeat -1142 NM_005468 10004 Hs.13967 NM_005468 ENSG00000168060 NAALADL1 I100|NAALADASEL N-acetylated alpha-linked acidic dipeptidase like 1 protein-coding 577-11 chr1 111669391 111669743 + 2 NA intron (NM_001370217, intron 1 of 7) intron (NM_001370217, intron 1 of 7) 4773 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 492-227 chr6 49039492 49039815 + 2 NA Intergenic Intergenic 423600 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 518-246 chr5 155678263 155678631 + 2 NA Intergenic HUERS-P2-int|LTR|ERV1 -648310 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 128-62 chr6 129524724 129524819 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie 185406 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 261-268 chr4 9895773 9896029 + 2 NA intron (NM_001001290, intron 9 of 12) L1ME1|LINE|L1 114267 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 272-254 chr3 4171408 4171633 + 2 NA Intergenic Intergenic -131784 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 223-142 chr2 14986049 14986265 + 2 NA Intergenic Intergenic 353440 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 331-445 chr6 10541316 10541617 + 2 NA intron (NM_145649, intron 3 of 4) L1PA11|LINE|L1 -14250 NM_001491 2651 Hs.519884 NM_001491 ENSG00000111846 GCNT2 CCAT|CTRCT13|GCNT2C|GCNT5|IGNT|II|NACGT1|NAGCT1|ULG3|bA360O19.2|bA421M1.1 glucosaminyl (N-acetyl) transferase 2 (I blood group) protein-coding 402-16 chr1 210873101 210873332 + 2 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 260158 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 196-277 chrX 67956168 67956344 + 2 NA Intergenic L2a|LINE|L2 411633 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 265-183 chr2 75449088 75449280 + 2 NA Intergenic AluSz6|SINE|Alu -74884 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 359-332 chr3 118234499 118234786 + 2 NA Intergenic Intergenic -407126 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 395-268 chr5 39168352 39168668 + 2 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 51053 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 332-84 chr11 22867689 22867955 + 2 NA Intergenic Intergenic -7348 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 397-100 chr14 88930728 88931093 + 2 NA Intergenic Intergenic 106259 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 594-45 chr14 68953624 68954051 + 2 NA intron (NM_001102, intron 1 of 20) AluSx4|SINE|Alu 25465 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 502-68 chr12 45469625 45469955 + 2 NA Intergenic MER52C|LTR|ERV1 177100 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 205-9 chr1 40373079 40373245 + 2 NA promoter-TSS (NM_022733) promoter-TSS (NM_022733) -565 NM_022733 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 367-419 chr7 49102110 49102400 + 2 NA Intergenic Intergenic 177708 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 361-66 chr11 13538993 13539302 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -42972 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 226-4 chr1 42521962 42522137 + 2 NA intron (NM_001355227, intron 6 of 18) MER2|DNA|TcMar-Tigger -10971 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 304-435 chr5 141251979 141252168 + 2 NA Intergenic Intergenic 6678 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 254-11 chr1 79526793 79527033 + 2 NA Intergenic Intergenic -520183 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 398-80 chr12 84997796 84998033 + 2 NA Intergenic MER65D|LTR|ERV1 38363 NM_001100917 144448 Hs.156962 NM_001100917 ENSG00000231738 TSPAN19 - tetraspanin 19 protein-coding 326-465 chr6 129436523 129436730 + 2 NA intron (NM_000426, intron 41 of 64) L1ME4b|LINE|L1 273551 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 262-429 chr8 82336292 82336539 + 2 NA Intergenic L1PA10|LINE|L1 -494129 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 360-108 chr13 92759663 92760007 + 2 NA intron (NM_004466, intron 7 of 7) L1M2a|LINE|L1 -38221 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 213-306 chr9 124140484 124140640 + 2 NA Intergenic AluSz|SINE|Alu -117044 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 349-348 chr3 166918483 166918659 + 2 NA intron (NR_135545, intron 2 of 2) L1PREC2|LINE|L1 19888 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 182-101 chr20 57567994 57568159 + 2 NA TTS (NM_002591) TTS (NM_002591) 6966 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 327-519 chr9 28711368 28711559 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 7842 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 154-109 chr8 139174485 139174606 + 2 NA Intergenic Intergenic -260504 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 331-75 chr10 127604193 127604499 + 2 NA Intergenic Intergenic 54997 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 382-323 chr5 44470503 44470771 + 2 NA Intergenic L1M4a1|LINE|L1 39645 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 147-75 chr5 125623744 125623887 + 2 NA Intergenic L1M4a2|LINE|L1 130554 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 249-193 chr2 59345302 59345495 + 2 NA Intergenic Intergenic 127690 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 340-134 chr13 89814688 89814940 + 2 NA Intergenic Intergenic -250401 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 313-148 chr14 61912660 61912950 + 2 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -14890 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 328-457 chr5 74457214 74457419 + 2 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 79660 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 289-234 chr2 103834613 103834773 + 2 NA Intergenic Intergenic 573639 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 204-139 chr2 62521540 62521703 + 2 NA Intergenic L1PA5|LINE|L1 -15426 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 275-7 chr1 78174705 78174916 + 2 NA Intergenic Intergenic -54789 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 573-106 chr20 57174682 57175092 + 2 NA intron (NM_001719, intron 5 of 6) intron (NM_001719, intron 5 of 6) -38809 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 305-87 chr10 130703704 130703944 + 2 NA Intergenic Intergenic 258844 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 389-7 chr1 58725689 58726041 + 2 NA Intergenic Intergenic -25803 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 247-84 chr12 39866876 39867074 + 2 NA intron (NM_052885, intron 5 of 9) intron (NM_052885, intron 5 of 9) 239106 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 277-440 chr9 10905722 10905863 + 2 NA Intergenic Intergenic 292586 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 331-367 chr3 156372804 156372989 + 2 NA intron (NM_172159, intron 1 of 13) intron (NM_172159, intron 1 of 13) 74040 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 353-174 chr16 35439154 35439445 + 2 NA Intergenic MER34B-int|LTR|ERV1 41297 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 644-45 chr2 175341796 175342202 + 2 NA Intergenic L1MA4A|LINE|L1 -160289 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 323-248 chr2 64495699 64495955 + 2 NA intron (NR_147011, intron 2 of 2) intron (NR_147011, intron 2 of 2) 9474 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 360-86 chr12 44524582 44524844 + 2 NA intron (NM_006159, intron 17 of 20) intron (NM_006159, intron 17 of 20) 350948 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 301-227 chr2 145501277 145501523 + 2 NA Intergenic Intergenic 833433 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 285-367 chr6 84571972 84572128 + 2 NA Intergenic L1MEg|LINE|L1 -97121 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 411-128 chr18 28966201 28966562 + 2 NA Intergenic L1ME3E|LINE|L1 -789251 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 419-229 chr5 42120473 42120850 + 2 NA Intergenic Intergenic 54684 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 336-502 chr7 1785607 1785804 + 2 NA Intergenic L1ME3E|LINE|L1 -43395 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 359-12 chr1 69205884 69206113 + 2 NA Intergenic Intergenic 150100 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 322-459 chr6 65760015 65760317 + 2 NA Intergenic L1MA9|LINE|L1 -27713 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 247-12 chr1 101157881 101158090 + 2 NA Intergenic Intergenic 78543 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 455-176 chr3 176005762 176006031 + 2 NA Intergenic Intergenic -229563 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 540-221 chr9 27318800 27319179 + 2 NA Intergenic AluY|SINE|Alu -21839 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 299-368 chr5 59697471 59697692 + 2 NA intron (NM_001165899, intron 3 of 16) MIRb|SINE|MIR 6122 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 527-187 chr4 54466395 54466784 + 2 NA Intergenic L1MCa|LINE|L1 133697 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 328-528 chr7 34780042 34780311 + 2 NA intron (NM_207172, intron 3 of 8) MLT1F|LTR|ERVL-MaLR -21904 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 205-91 chr14 76241860 76242002 + 2 NA Intergenic L1PB2|LINE|L1 87577 NM_017972 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 333-498 chr6 36412037 36412228 + 2 NA intron (NM_152990, intron 3 of 4) AluSx|SINE|Alu -24332 NM_001207036 51513 Hs.272398 NM_016135 ENSG00000010030 ETV7 TEL-2|TEL2|TELB ETS variant 7 protein-coding 338-573 chr8 140342708 140343014 + 2 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 114883 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 308-547 chrX 73362423 73362639 + 2 NA Intergenic L1PB1|LINE|L1 -84723 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 209-352 chrX 23271857 23272009 + 2 NA intron (NR_073010, intron 1 of 11) L1M5|LINE|L1 21213 NR_073010 100873065 Hs.628459 NR_046436 PTCHD1-AS DDX53-AS1|PTCHD1AS1|PTCHD1AS2 PTCHD1 antisense RNA (head to head) ncRNA 256-260 chr3 81274557 81274806 + 2 NA Intergenic Intergenic 280813 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 337-424 chr4 187737250 187737531 + 2 NA Intergenic L1MC|LINE|L1 -64749 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 196-225 chr6 67879013 67879122 + 2 NA Intergenic L1MEc|LINE|L1 -176284 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 378-171 chr17 53560224 53560502 + 2 NA Intergenic L1MB8|LINE|L1 -262564 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 555-176 chr6 71488839 71489366 + 2 NA Intergenic Intergenic 68075 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 163-6 chr1 166005102 166005226 + 2 NA Intergenic L1PREC2|LINE|L1 97243 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 305-367 chr3 191636498 191636685 + 2 NA Intergenic Intergenic 175428 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 314-92 chr11 35170228 35170448 + 2 NA intron (NM_001001389, intron 1 of 16) intron (NM_001001389, intron 1 of 16) 7388 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 265-295 chr5 9912603 9912762 + 2 NA Intergenic Charlie26a|DNA|hAT-Charlie -8858 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 239-200 chr2 185823187 185823412 + 2 NA intron (NM_173651, intron 19 of 22) L1MB3|LINE|L1 -23148 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 397-27 chr10 43152522 43152745 + 2 NA intron (NM_018590, intron 1 of 7) intron (NM_018590, intron 1 of 7) -2264 NM_001319656 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 430-42 chr10 100659070 100659435 + 2 NA Intergenic MIR3|SINE|MIR -76144 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 212-137 chr19 44329599 44329767 + 2 NA exon (NM_001083335, exon 5 of 5) exon (NM_001083335, exon 5 of 5) -24658 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 459-31 chr10 54601492 54601818 + 2 NA intron (NR_134503, intron 2 of 5) L1PA16|LINE|L1 6302 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 173-108 chr5 37734334 37734498 + 2 NA intron (NM_001345998, intron 17 of 17) L2a|LINE|L2 100406 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 185-95 chr2 68007121 68007286 + 2 NA Intergenic LTR16C|LTR|ERVL 55801 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 249-353 chr6 52041523 52041720 + 2 NA intron (NM_138694, intron 27 of 66) intron (NM_138694, intron 27 of 66) 45992 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 134-70 chr5 123592105 123592187 + 2 NA intron (NM_001364145, intron 8 of 10) L2b|LINE|L2 46729 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 320-509 chr7 31013365 31013533 + 2 NA Intergenic HAL1|LINE|L1 -38859 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 518-123 chr2 27968834 27969317 + 2 NA intron (NM_199193, intron 4 of 13) THE1B|LTR|ERVL-MaLR -27292 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 203-251 chr9 92859220 92859373 + 2 NA intron (NM_001007101, intron 1 of 3) L1MEf|LINE|L1 18672 NM_001354536 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 422-61 chr12 55048155 55048505 + 2 NA Intergenic Intergenic 28356 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 322-241 chr2 50943703 50943998 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 88282 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 493-238 chr5 25841334 25841796 + 2 NA Intergenic L1MCa|LINE|L1 650612 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 325-370 chr3 179489724 179489931 + 2 NA Intergenic Intergenic -38357 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 263-12 chr1 90326349 90326559 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -331296 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 243-387 chr6 63859287 63859452 + 2 NA intron (NM_001292009, intron 36 of 43) MIR|SINE|MIR 52533 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 442-155 chr20 10499682 10500050 + 2 NA intron (NM_001009608, intron 2 of 7) intron (NM_001009608, intron 2 of 7) 64561 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 621-123 chr7 125955190 125955600 + 2 NA Intergenic L1PA16|LINE|L1 -691104 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 400-160 chr2 51421308 51421665 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 388885 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 319-346 chr3 160907318 160907555 + 2 NA intron (NR_134243, intron 2 of 5) intron (NR_134243, intron 2 of 5) 36838 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 262-415 chr8 18860049 18860239 + 2 NA intron (NM_015310, intron 4 of 15) Tigger1|DNA|TcMar-Tigger 26913 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 338-350 chr3 109696277 109696585 + 2 NA Intergenic Intergenic 93603 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 348-109 chr12 33017110 33017402 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -120410 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 341-81 chr11 34535006 34535235 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -21326 NM_001422 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 621-27 chr12 94842274 94842842 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 8104 NR_036685 160313 Hs.527883 NR_036685 ENSG00000216306 KRT19P2 KRT19P5 keratin 19 pseudogene 2 pseudo 349-253 chr2 59400605 59400871 + 2 NA Intergenic L1M4b|LINE|L1 183030 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 455-221 chr5 63435727 63436012 + 2 NA Intergenic Intergenic 526423 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 353-92 chr11 96877470 96877751 + 2 NA Intergenic MER52A|LTR|ERV1 369185 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 163-30 chr12 33709768 33709878 + 2 NA Intergenic Intergenic -270004 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 188-214 chr9 27423502 27423650 + 2 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -100738 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 572-84 chr2 50241327 50241815 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 106183 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 456-208 chr3 116691150 116691557 + 2 NA Intergenic FLAM_C|SINE|Alu -18435 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 150-97 chr7 21780734 21780849 + 2 NA intron (NM_001277115, intron 57 of 81) intron (NM_001277115, intron 57 of 81) 165108 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 417-253 chr7 3909200 3909457 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -220357 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 506-182 chr3 82624593 82625040 + 2 NA Intergenic L1MC5a|LINE|L1 638674 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 347 chr1 5549997 5550277 + 2 NA Intergenic L1MB3|LINE|L1 312604 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 336-96 chr11 50685461 50685697 + 2 NA Intergenic ALR/Alpha|Satellite|centr 276432 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 615-95 chr4 62258657 62259100 + 2 NA Intergenic Intergenic -97113 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 489-70 chr14 45096104 45096517 + 2 NA intron (NM_017922, intron 3 of 13) (T)n|Simple_repeat|Simple_repeat 12194 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 275-272 chr4 95877359 95877536 + 2 NA Intergenic L1ME2|LINE|L1 37354 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 486-289 chr8 64843725 64844089 + 2 NA Intergenic Intergenic -45170 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 729-41 chr2 127245472 127246085 + 2 NA Intergenic L1M5|LINE|L1 -25479 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 294-109 chr14 38705215 38705423 + 2 NA Intergenic LTR16A|LTR|ERVL -177277 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 320-210 chr17 64562715 64562980 + 2 NA exon (NM_022739, exon 11 of 19) exon (NM_022739, exon 11 of 19) 55870 NM_001316990 90799 Hs.569713 NM_138363 ENSG00000258890 CEP95 CCDC45 centrosomal protein 95 protein-coding 252-121 chr14 78060311 78060545 + 2 NA Intergenic L3|LINE|CR1 -109945 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 257-450 chrX 45963132 45963295 + 2 NA Intergenic L1M4c|LINE|L1 -111723 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 308-508 chr8 119465222 119465496 + 2 NA Intergenic L1PA13|LINE|L1 48913 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 339-86 chr11 11147504 11147747 + 2 NA Intergenic LTR33|LTR|ERVL 205625 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 224-43 chr10 123527591 123527777 + 2 NA Intergenic Intergenic -138671 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 299-25 chr1 162365965 162366202 + 2 NA intron (NM_001126060, intron 1 of 1) intron (NM_001126060, intron 1 of 1) 3100 NM_001126060 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 324-273 chr2 111089888 111090195 + 2 NA intron (NM_001371254, intron 17 of 18) L3|LINE|CR1 25547 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 196-79 chr14 84098309 84098459 + 2 NA Intergenic Intergenic -1173548 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 444-102 chr18 13680577 13680885 + 2 NA intron (NM_152352, intron 2 of 3) intron (NM_152352, intron 2 of 3) 38973 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 189-16 chr10 33815613 33815739 + 2 NA Intergenic Intergenic -42996 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 407-14 chr1 196076997 196077216 + 2 NA intron (NR_146895, intron 1 of 3) intron (NR_146895, intron 1 of 3) 11609 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 309-269 chr2 137231299 137231580 + 2 NA intron (NM_001316349, intron 8 of 27) intron (NM_001316349, intron 8 of 27) 465894 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 496-89 chr14 78505927 78506310 + 2 NA intron (NM_004796, intron 1 of 16) L1MA10|LINE|L1 102399 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 270-58 chr11 74763004 74763197 + 2 NA intron (NM_001098638, intron 1 of 5) L1ME3C|LINE|L1 14251 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 239-258 chr3 137595428 137595598 + 2 NA Intergenic Intergenic -168802 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 396-262 chr4 149076968 149077248 + 2 NA Intergenic Intergenic -77187 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 278-229 chr2 126517338 126517594 + 2 NA Intergenic L2a|LINE|L2 -138469 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 372-139 chr14 53629812 53630166 + 2 NA Intergenic Intergenic 318495 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 225-172 chr2 226273435 226273607 + 2 NA Intergenic Intergenic 130727 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 319-549 chr8 127262128 127262313 + 2 NA intron (NR_117099, intron 1 of 3) L1MA7|LINE|L1 17583 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 251-327 chr6 16024703 16024924 + 2 NA Intergenic MIR3|SINE|MIR -104273 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 272 chr1 1100766 1100950 + 2 NA intron (NM_017891, intron 1 of 9) L1ME2|LINE|L1 15231 NM_001330306 54991 Hs.235095 NM_017891 ENSG00000131591 C1orf159 - chromosome 1 open reading frame 159 protein-coding 443-205 chr3 95630373 95630738 + 2 NA Intergenic Intergenic 52638 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 377-315 chr5 26466135 26466413 + 2 NA Intergenic L1MEd|LINE|L1 572312 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 610-34 chr12 18844125 18844546 + 2 NA Intergenic AluSq|SINE|Alu 106216 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 344-7 chr1 57396802 57397055 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 26184 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 234-351 chr6 167906445 167906632 + 2 NA intron (NM_001207008, intron 11 of 31) intron (NM_001207008, intron 11 of 31) 70401 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 350-75 chr11 71318074 71318319 + 2 NA Intergenic L1MCa|LINE|L1 -93400 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 259-403 chr8 100580324 100580528 + 2 NA intron (NM_152628, intron 12 of 13) MLT1J|LTR|ERVL-MaLR -20667 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 470-283 chr9 25258967 25259400 + 2 NA Intergenic Intergenic 419675 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 308-135 chr14 26059208 26059479 + 2 NA Intergenic L2a|LINE|L2 494087 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 377-3 chr1 34101579 34101919 + 2 NA intron (NM_052896, intron 1 of 69) intron (NM_052896, intron 1 of 69) 63525 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 274-61 chr11 19617781 19618009 + 2 NA intron (NM_001111018, intron 1 of 37) L2a|LINE|L2 42585 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 351-109 chr13 73831384 73831654 + 2 NA intron (NM_007249, intron 4 of 7) Tigger15a|DNA|TcMar-Tigger 267275 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 126-21 chr14 26317337 26317406 + 2 NA Intergenic Intergenic 236059 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 205-178 chr3 25502865 25503036 + 2 NA intron (NR_110892, intron 3 of 6) intron (NR_110892, intron 3 of 6) 44640 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 330-102 chr11 98145203 98145368 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -875664 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 168-65 chr2 169871934 169872086 + 2 NA intron (NM_172070, intron 1 of 38) intron (NM_172070, intron 1 of 38) 44502 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 303-247 chr20 21842484 21842764 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 136960 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 551-214 chr8 87575330 87575750 + 2 NA Intergenic L1MEg|LINE|L1 298475 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 414-187 chr20 53161491 53161847 + 2 NA intron (NM_173485, intron 1 of 2) THE1D|LTR|ERVL-MaLR -23614 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 269-57 chr11 10362252 10362426 + 2 NA intron (NR_103765, intron 2 of 3) L1MEf|LINE|L1 54026 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 250-437 chr8 105722030 105722230 + 2 NA intron (NM_001362837, intron 5 of 7) MER33|DNA|hAT-Charlie 338373 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 320-79 chr11 39254033 39254334 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 605325 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 403-58 chr11 97841654 97841952 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -1179146 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 399 chr1 8194564 8194767 + 2 NA Intergenic Intergenic -14007 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 591-164 chr8 75228444 75228885 + 2 NA intron (NR_103849, intron 1 of 1) Tigger7|DNA|TcMar-Tigger 49817 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 298-181 chr18 64066216 64066498 + 2 NA Intergenic L1MA4A|LINE|L1 -37734 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 344-530 chrX 56701861 56702151 + 2 NA Intergenic L2a|LINE|L2 -27237 NM_001348129 550643 Hs.355559 NM_001348129 ENSG00000204272 NBDY LINC01420|NoBody negative regulator of P-body association protein-coding 188-196 chr7 115379649 115379745 + 2 NA Intergenic L1MC5|LINE|L1 -148342 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 482-215 chr5 180244183 180244517 + 2 NA intron (NM_139070, intron 7 of 11) L2|LINE|L2 -35139 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 529-198 chr6 112588194 112588545 + 2 NA Intergenic Intergenic 241039 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 254-370 chr7 19417148 19417331 + 2 NA Intergenic Intergenic -271818 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 210-284 chr8 79064108 79064271 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 226660 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 335-249 chr2 95290449 95290777 + 2 NA 3' UTR (NM_001165978, exon 24 of 24) 3' UTR (NM_001165978, exon 24 of 24) -6734 NM_013434 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 261-122 chr15 57750069 57750319 + 2 NA Intergenic Intergenic 43480 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 239-255 chr3 132159439 132159647 + 2 NA Intergenic Intergenic -119937 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 1038-14 chr6 151962585 151963354 + 2 NA intron (NM_001122741, intron 5 of 8) HAL1|LINE|L1 153862 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 461-290 chr9 69532812 69533190 + 2 NA intron (NM_001163, intron 1 of 12) L1ME4b|LINE|L1 139370 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 389-212 chr21 23664302 23664527 + 2 NA Intergenic Intergenic -279579 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 526-4 chr1 78076549 78076884 + 2 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 30750 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 649-104 chr7 87275423 87275886 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -55067 NR_138030 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 265-117 chr15 33385139 33385375 + 2 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 74290 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 227-300 chr5 164186479 164186635 + 2 NA Intergenic MIR|SINE|MIR 280845 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 300-385 chr6 40240277 40240520 + 2 NA Intergenic L1PA14|LINE|L1 115608 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 427 chr1 5931104 5931395 + 2 NA intron (NR_111987, intron 10 of 32) L1MD2|LINE|L1 61176 NM_001291593 261734 Hs.462348 NM_015102 ENSG00000131697 NPHP4 POC10|SLSN4 nephrocystin 4 protein-coding 305-307 chr20 39440492 39440793 + 2 NA Intergenic Intergenic -215894 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 158-97 chr5 143937753 143937895 + 2 NA Intergenic Intergenic 125663 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 325-189 chr16 6562196 6562412 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -211505 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 221-107 chr17 16139481 16139672 + 2 NA intron (NM_001190440, intron 10 of 44) intron (NM_001190440, intron 10 of 44) 13620 NR_145787 109623477 NR_145787 SNORD163 - small nucleolar RNA, C/D box 163 snoRNA 615-77 chr22 33222834 33223174 + 2 NA Intergenic Intergenic 114475 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 363-89 chr11 106728154 106728386 + 2 NA intron (NM_000855, intron 6 of 7) intron (NM_000855, intron 6 of 7) 290206 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 603-120 chr4 66834168 66834534 + 2 NA Intergenic Intergenic 557527 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 464-260 chr8 121786617 121786885 + 2 NA Intergenic Intergenic -145311 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 307-533 chrX 83792525 83792780 + 2 NA Intergenic L1MA5A|LINE|L1 -68474 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 405-324 chr8 87714916 87715218 + 2 NA Intergenic LTR33|LTR|ERVL 158948 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 569-174 chr8 53595962 53596518 + 2 NA Intergenic MIRb|SINE|MIR -72275 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 318-10 chr1 48478414 48478677 + 2 NA Intergenic Intergenic -6337 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 312-186 chr17 41452016 41452221 + 2 NA Intergenic Intergenic -10774 NM_006771 8687 Hs.248188 NM_006771 ENSG00000171360 KRT38 HA8|KRTHA8|hHa8 keratin 38 protein-coding 534-63 chr12 65782350 65782786 + 2 NA intron (NR_026825, intron 1 of 1) intron (NR_026825, intron 1 of 1) -41892 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 211-202 chr3 187069407 187069554 + 2 NA intron (NM_173216, intron 5 of 7) intron (NM_173216, intron 5 of 7) 30762 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 764-52 chr4 58107982 58108621 + 2 NA Intergenic LTR70|LTR|ERV1 428027 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 447-118 chr2 21195729 21196127 + 2 NA Intergenic Intergenic 71942 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 322-238 chr2 41422474 41422680 + 2 NA Intergenic L1MA9|LINE|L1 -454978 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 147-13 chr12 30670059 30670196 + 2 NA intron (NM_006390, intron 9 of 24) intron (NM_006390, intron 9 of 24) 7117 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 266-269 chr3 184108199 184108376 + 2 NA Intergenic Intergenic -3109 NR_133658 106478970 Hs.581159 NR_133658 ENSG00000238020 HTR3E-AS1 - HTR3E antisense RNA 1 ncRNA 313-362 chr3 149689694 149689885 + 2 NA intron (NM_001348362, intron 3 of 9) L1MA3|LINE|L1 13484 NM_001168278 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 325-296 chr2 215560471 215560648 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 106852 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 599-143 chr9 86647905 86648495 + 2 NA Intergenic MIRb|SINE|MIR -293790 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 406-102 chr16 35188798 35189173 + 2 NA Intergenic Intergenic -6774 NR_157261 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 360-167 chr17 61285991 61286296 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 81561 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 189-181 chr6 142718480 142718616 + 2 NA Intergenic L1MEc|LINE|L1 -80659 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 564-128 chr3 112200693 112201105 + 2 NA intron (NM_001320531, intron 17 of 27).2 intron (NM_001320531, intron 17 of 27).2 67476 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 221-129 chr18 69100552 69100727 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -300249 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 247-51 chr11 10138319 10138473 + 2 NA intron (NM_030962, intron 2 of 39) L1MD2|LINE|L1 155811 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 305-168 chr15 37176250 37176496 + 2 NA Intergenic Intergenic -75062 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 276-411 chr6 121656308 121656578 + 2 NA Intergenic Intergenic 220797 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 605-87 chr4 165725644 165726168 + 2 NA intron (NR_121676, intron 3 of 5) intron (NR_121676, intron 3 of 5) 17165 NR_121677 101928131 Hs.406479 NR_121677 LOC101928131 - uncharacterized LOC101928131 ncRNA 325-354 chr3 104926854 104927161 + 2 NA Intergenic LTR16A|LTR|ERVL -439706 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 475-292 chr9 9164415 9164698 + 2 NA intron (NM_002839, intron 10 of 45) MLT1D|LTR|ERVL-MaLR 306538 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 234-364 chr7 48563620 48563746 + 2 NA intron (NM_152701, intron 55 of 61) MER76|LTR|ERVL -360864 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 463-70 chr12 128876974 128877284 + 2 NA intron (NM_144669, intron 2 of 7) LTR37B|LTR|ERV1 23651 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 344-4 chr1 22440357 22440695 + 2 NA Intergenic L1MB3|LINE|L1 -11325 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 273-346 chr5 15736375 15736550 + 2 NA intron (NM_001278317, intron 2 of 3) MamRep1151|LTR?|LTR? -121460 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 352-304 chr22 44831481 44831764 + 2 NA intron (NM_181335, intron 7 of 11) AluSq2|SINE|Alu 79064 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 540-142 chr3 41020487 41020870 + 2 NA Intergenic MIR|SINE|MIR -178827 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 362-26 chr1 112350388 112350609 + 2 NA Intergenic L1MEd|LINE|L1 -45716 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 263-438 chr8 137668259 137668415 + 2 NA Intergenic MIRc|SINE|MIR -254749 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 509-231 chr7 31043343 31043693 + 2 NA Intergenic Intergenic -8790 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 268-297 chr4 164404447 164404586 + 2 NA Intergenic Intergenic -21261 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 302-117 chr13 74869372 74869544 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 316615 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 303-274 chr22_KI270736v1_random 122755 123051 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 421-219 chr4 98688026 98688410 + 2 NA Intergenic Intergenic 29316 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 322-80 chr11 13517715 13517900 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -21632 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 298-336 chr4 102041375 102041659 + 2 NA intron (NM_017935, intron 10 of 16) intron (NM_017935, intron 10 of 16) 227675 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 165-98 chr5 45367898 45368012 + 2 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 328425 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 344-80 chr11 80303626 80303901 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 459040 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 328-223 chr18 49145774 49146016 + 2 NA intron (NM_001353210, intron 14 of 16) L1M8|LINE|L1 -96127 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 461-257 chr8 20736283 20736649 + 2 NA Intergenic Intergenic -121540 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 303-292 chr3 116865775 116866059 + 2 NA Intergenic Intergenic -15550 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 370-372 chr5 67230940 67231217 + 2 NA Intergenic L1M5|LINE|L1 -34279 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 329-478 chr5 137688395 137688574 + 2 NA intron (NM_017415, intron 5 of 14) intron (NM_017415, intron 5 of 14) 17943 NM_001257195 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 329-444 chr5 15628296 15628547 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -13419 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 382-52 chr10 122621656 122621930 + 2 NA intron (NM_004406, intron 28 of 39) intron (NM_004406, intron 28 of 39) -51089 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 303-209 chr2 59929322 59929488 + 2 NA Intergenic Intergenic 453631 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 679-34 chr15 91165353 91165884 + 2 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 63822 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 187-145 chr5 170116720 170116858 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 10892 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 297-87 chr11 113355431 113355639 + 2 NA intron (NM_001318533, intron 16 of 21) L1PA13|LINE|L1 -32244 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 328-362 chr3 119762313 119762558 + 2 NA intron (NM_033364, intron 17 of 17) L1MA8|LINE|L1 -18049 NM_003889 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 498-167 chr3 44843678 44844101 + 2 NA intron (NM_020242, intron 30 of 34).2 MIRb|SINE|MIR -17999 NR_030290 693149 NR_030290 ENSG00000284498 MIR564 MIRN564|hsa-mir-564 microRNA 564 ncRNA 148-93 chr8 104183631 104183742 + 2 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -39649 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 221-229 chr5 3005593 3005778 + 2 NA Intergenic MER50|LTR|ERV1 87831 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 184-33 chr10 126692102 126692228 + 2 NA Intergenic L1M1|LINE|L1 -21655 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 536-20 chr1 201743427 201743809 + 2 NA intron (NM_001167738, intron 1 of 26) intron (NM_001167738, intron 1 of 26) 3718 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 165-42 chr18 5483689 5483814 + 2 NA intron (NM_001281535, intron 4 of 21) L1MA4|LINE|L1 56805 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 276-200 chr18 37961153 37961401 + 2 NA Intergenic Intergenic 304142 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 320-136 chr13 83985184 83985474 + 2 NA Intergenic L2b|LINE|L2 -102855 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 285-227 chr2 182460083 182460244 + 2 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -33115 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 385-226 chr21 34285880 34286228 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -77970 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 165-97 chr5 35493335 35493480 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -124456 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 275-99 chr14 26319491 26319649 + 2 NA Intergenic L1ME3F|LINE|L1 233860 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 386-356 chr8 105295642 105295936 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -22649 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 333-40 chr1 192429239 192429484 + 2 NA Intergenic L1MA4A|LINE|L1 112369 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 260-469 chrX 70112555 70112764 + 2 NA Intergenic LTR49-int|LTR|ERV1 -20788 NM_001370193 3476 Hs.496267 NM_001551 ENSG00000089289 IGBP1 ALPHA-4|IBP1 immunoglobulin binding protein 1 protein-coding 352-42 chr10 42916435 42916764 + 2 NA Intergenic AluSq2|SINE|Alu 45078 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 255-269 chr3 121384677 121384879 + 2 NA intron (NM_001348343, intron 23 of 27) A-rich|Low_complexity|Low_complexity 161210 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 273-238 chr2 152805457 152805614 + 2 NA Intergenic MER57A-int|LTR|ERV1 86898 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 260-423 chr8 22680622 22680854 + 2 NA Intergenic L2c|LINE|L2 -11590 NM_001363046 55909 Hs.433722 NM_018688 ENSG00000147439 BIN3 - bridging integrator 3 protein-coding 167-6 chr1 55999804 55999907 + 2 NA Intergenic MIRc|SINE|MIR 54768 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 310-523 chr8 101738849 101739107 + 2 NA intron (NM_001040625, intron 4 of 6) L2a|LINE|L2 51991 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 460-168 chr2 229690757 229691037 + 2 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 23658 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 661-74 chr4 108416322 108416772 + 2 NA Intergenic Intergenic -140686 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 336-5 chr1 18309822 18310138 + 2 NA intron (NM_032880, intron 3 of 9) intron (NM_032880, intron 3 of 9) -170950 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 302-169 chr17 54597819 54598100 + 2 NA Intergenic Intergenic -302732 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 282-215 chr2 96093216 96093359 + 2 NA Intergenic MIRb|SINE|MIR 23284 NM_000682 151 Hs.247686 NM_000682 ENSG00000274286 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR adrenoceptor alpha 2B protein-coding 300-210 chr2 117181962 117182232 + 2 NA Intergenic Intergenic -632594 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 131-73 chr7 109420280 109420390 + 2 NA Intergenic L1MC3|LINE|L1 -535748 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 379-360 chr8 126847246 126847520 + 2 NA Intergenic Intergenic -165771 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 169-116 chr7 26943826 26943945 + 2 NA Intergenic Intergenic -79295 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 606-75 chr2 14770816 14771244 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy 138313 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 366-23 chr1 165985821 165986077 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 78028 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 289-157 chr15 93512689 93512910 + 2 NA Intergenic Intergenic 306733 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 388-203 chr21 30698129 30698471 + 2 NA Intergenic Intergenic 20477 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 348 chr1 14039565 14039836 + 2 NA Intergenic Intergenic 290285 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 402-72 chr13 30419817 30420132 + 2 NA intron (NR_125771, intron 1 of 1) intron (NR_125771, intron 1 of 1) 2270 NR_125771 103724387 NR_125771 ENSG00000225039 LINC01058 - long intergenic non-protein coding RNA 1058 ncRNA 459-131 chr2 35842847 35843150 + 2 NA Intergenic Intergenic 371593 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 185-105 chr2 161720410 161720524 + 2 NA intron (NM_001354443, intron 2 of 25) L1PA4|LINE|L1 96051 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 300-137 chr16 3379777 3379954 + 2 NA Intergenic AluJb|SINE|Alu -7197 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 313-575 chrX 98620032 98620244 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -1055603 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 267-279 chr4 11840122 11840366 + 2 NA Intergenic L2c|LINE|L2 57066 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 368-59 chr10 74810318 74810612 + 2 NA Intergenic L1M5|LINE|L1 -14790 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 231-257 chr4 72177547 72177755 + 2 NA Intergenic Intergenic 138519 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 258-299 chr4 129543776 129543965 + 2 NA Intergenic Intergenic 227608 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 260-342 chr5 27925601 27925760 + 2 NA Intergenic Intergenic 361985 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 297-385 chr5 151397168 151397355 + 2 NA Intergenic Intergenic -39785 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 331-210 chr17 70994827 70995076 + 2 NA Intergenic Intergenic 207228 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 134-43 chr19 27841941 27842067 + 2 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -48064 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 633-36 chr13 75468426 75469019 + 2 NA intron (NM_001286658, intron 1 of 19) intron (NM_001286658, intron 1 of 19) 13446 NM_001286658 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 290-18 chr1 106808838 106809069 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -9286 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 137-90 chr8 53806805 53806902 + 2 NA intron (NM_213619, intron 6 of 12) MER47A|DNA|TcMar-Tigger 36189 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 259-299 chr4 159609288 159609477 + 2 NA Intergenic LTR19A|LTR|ERV1 168402 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 444-6 chr1 68726354 68726732 + 2 NA Intergenic L2c|LINE|L2 -229461 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 498-230 chr6 27422175 27422638 + 2 NA intron (NR_144688, intron 5 of 8) intron (NR_144688, intron 5 of 8) 33688 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 428-59 chr13 94005164 94005532 + 2 NA intron (NM_005708, intron 3 of 8) intron (NM_005708, intron 3 of 8) -146875 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 232-169 chr2 58036867 58037028 + 2 NA intron (NM_001288838, intron 3 of 15) intron (NM_001288838, intron 3 of 15) -9695 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 214-56 chr11 5455232 5455370 + 2 NA TTS (NM_001004754) TTS (NM_001004754) 1893 NM_001004754 390064 Hs.553733 NM_001004754 ENSG00000187918 OR51I2 OR11-38 olfactory receptor family 51 subfamily I member 2 protein-coding 370-179 chr17 40761482 40761839 + 2 NA Intergenic L1MA8|LINE|L1 -6329 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 347-82 chr11 109716062 109716290 + 2 NA Intergenic MIR|SINE|MIR 293986 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 393-268 chr5 16002840 16003061 + 2 NA Intergenic Intergenic 67768 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 296-34 chr10 23824970 23825187 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 130351 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 387-247 chr4 36071260 36071546 + 2 NA intron (NR_146894, intron 32 of 32) MIR|SINE|MIR 172536 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 323-133 chr14 28125321 28125592 + 2 NA Intergenic L1MC5a|LINE|L1 -452235 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 469-289 chr8 121515198 121515495 + 2 NA Intergenic L1PA10|LINE|L1 -124000 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 217-291 chr5 51971447 51971623 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -36496 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 279-55 chr10 111443365 111443591 + 2 NA Intergenic Intergenic 329187 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 328-89 chr11 79731541 79731839 + 2 NA Intergenic Intergenic -290660 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 350-256 chr2 196192070 196192245 + 2 NA Intergenic Intergenic -20579 NM_004226 9262 Hs.88297 NM_004226 ENSG00000081320 STK17B DRAK2 serine/threonine kinase 17b protein-coding 200-60 chr12 121095238 121095413 + 2 NA Intergenic L1MA9|LINE|L1 -37551 NR_033953 5027 Hs.439682 NM_002562 ENSG00000089041 P2RX7 P2X7 purinergic receptor P2X 7 protein-coding 377-139 chr15 83270312 83270598 + 2 NA intron (NM_001717, intron 1 of 4) L1M4|LINE|L1 13002 NM_001301206 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 409-252 chr5 120380494 120380834 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -83614 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 261-163 chr18 77229992 77230154 + 2 NA Intergenic Intergenic -19775 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 175-19 chr1 212128941 212129088 + 2 NA Intergenic L2|LINE|L2 51401 NR_036068 100422947 NR_036068 ENSG00000264358 MIR3122 mir-3122 microRNA 3122 ncRNA 556-83 chr17 68859152 68859528 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 96052 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 231-213 chr3 1755512 1755693 + 2 NA Intergenic Intergenic -343201 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 568-99 chr2 36225402 36225887 + 2 NA Intergenic L1MC1|LINE|L1 129926 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 447-48 chr11 115517269 115517571 + 2 NA Intergenic AluJr|SINE|Alu -13005 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 295-435 chr7 42773512 42773687 + 2 NA Intergenic Intergenic -67152 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 509-161 chr3 185780232 185780567 + 2 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) -12495 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 260-28 chr1 199395697 199395898 + 2 NA Intergenic L3|LINE|CR1 247199 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 295-179 chr18 2386216 2386446 + 2 NA Intergenic L1ME1|LINE|L1 185174 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 210-283 chr8 78928513 78928669 + 2 NA Intergenic Intergenic 91062 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 421-157 chr2 203826639 203826982 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -40961 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 566-12 chr10 58529408 58529796 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 16730 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 332-72 chr10 90783210 90783394 + 2 NA intron (NM_019860, intron 1 of 2) L1MEd|LINE|L1 74737 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 534-255 chr8 77525146 77525676 + 2 NA Intergenic Intergenic 74714 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 357-176 chr18 71229024 71229309 + 2 NA Intergenic Intergenic 349790 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 269-355 chr6 118706898 118707159 + 2 NA intron (NM_001178035, intron 1 of 13) intron (NM_001178035, intron 1 of 13) 3047 NM_001178035 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 260-129 chr14 62544321 62544574 + 2 NA Intergenic L1ME2z|LINE|L1 -404474 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 426-161 chr20 21752394 21752666 + 2 NA Intergenic L1M5|LINE|L1 46866 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 599-144 chr9 91480186 91480609 + 2 NA Intergenic L1M4|LINE|L1 -55771 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 249-250 chr3 957069 957301 + 2 NA Intergenic MIR|SINE|MIR -135839 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 307-147 chr14 73053864 73054097 + 2 NA Intergenic Intergenic -4554 NM_021239 58517 Hs.531106 NM_021239 ENSG00000119707 RBM25 NET52|RED120|RNPC7|S164|Snu71|fSAP94 RNA binding motif protein 25 protein-coding 693-24 chr12 105533586 105534078 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -170371 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 225-103 chr15 66358098 66358289 + 2 NA Intergenic Intergenic -1477 NM_001289986 54962 Hs.744308 NM_017858 ENSG00000075131 TIPIN - TIMELESS interacting protein protein-coding 340-430 chr5 12107330 12107561 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -202999 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 353-38 chr1 222169529 222169821 + 2 NA Intergenic L1PA16|LINE|L1 -191155 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 259-262 chr3 161020163 161020383 + 2 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 84459 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 299-404 chr6 146798015 146798247 + 2 NA intron (NM_024694, intron 33 of 35) L1M4a2|LINE|L1 5693 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 367-166 chr17 57144710 57144968 + 2 NA Intergenic MIR|SINE|MIR 49350 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 317-456 chr7 71668535 71668766 + 2 NA intron (NM_022479, intron 7 of 10) intron (NM_022479, intron 7 of 10) -360880 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 398-194 chr21 35372574 35372901 + 2 NA non-coding (NR_073512, exon 3 of 3) non-coding (NR_073512, exon 3 of 3) 208027 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 293-2 chr1 28953897 28954065 + 2 NA intron (NM_001166006, intron 1 of 14) MER5A|DNA|hAT-Charlie 39405 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 226-202 chr20 52283700 52283833 + 2 NA Intergenic Intergenic -91781 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 464-180 chr4 53507914 53508186 + 2 NA exon (NM_032622, exon 2 of 10) exon (NM_032622, exon 2 of 10) 7973 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 868-5 chr11 96940860 96941604 + 2 NA Intergenic Intergenic 432807 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 349-137 chr12 117909647 117909969 + 2 NA intron (NM_173598, intron 1 of 19) AluSz|SINE|Alu 59182 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 312-338 chr3 104108264 104108548 + 2 NA Intergenic LTR16E1|LTR|ERVL -584290 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 713-59 chr3 174939744 174940284 + 2 NA intron (NM_207015, intron 1 of 13) L1PA14|LINE|L1 80680 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 419-245 chr5 178175164 178175529 + 2 NA Intergenic AluSx|SINE|Alu 12025 NM_001358008 64396 Hs.591738 NM_022471 ENSG00000244234 GMCL2 GCL|GMCL1L|GMCL1P1 germ cell-less 2, spermatogenesis associated protein-coding 246-30 chr10 17537181 17537323 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 80122 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 131-50 chr3 126302136 126302227 + 2 NA Intergenic L1MEc|LINE|L1 55227 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 242-352 chr6 141356428 141356663 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 672731 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 255-384 chr7 46894034 46894252 + 2 NA Intergenic Intergenic -197021 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 172-16 chr10 75669802 75669940 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 22362 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 285-83 chr12 30866740 30867006 + 2 NA Intergenic L1ME3G|LINE|L1 -59875 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 511-124 chr2 106716084 106716466 + 2 NA Intergenic Intergenic 169753 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 319-507 chr7 75642380 75642607 + 2 NA intron (NM_005338, intron 1 of 30) AluSx|SINE|Alu 96448 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 173-134 chr8 13931155 13931289 + 2 NA Intergenic Intergenic 301532 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 429-79 chr13 35987269 35987582 + 2 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) -131564 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 333-264 chr2 123285838 123286139 + 2 NA Intergenic L1M4b|LINE|L1 -212507 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 322 chr1 5247778 5248008 + 2 NA Intergenic AluJo|SINE|Alu 593284 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 194-21 chr10 38515229 38515396 + 2 NA Intergenic Intergenic 87166 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 373-73 chr10 129617235 129617528 + 2 NA intron (NM_002412, intron 2 of 4) L1PA16|LINE|L1 150140 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 292-427 chr8 74090400 74090622 + 2 NA Intergenic Intergenic 99119 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 308-57 chr10 50478158 50478387 + 2 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 145684 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 482-76 chr14 37107764 37108201 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -64044 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 220-233 chr3 88409132 88409313 + 2 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 70766 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 438-36 chr10 81853871 81854211 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -21153 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 433-33 chr10 110507157 110507555 + 2 NA intron (NM_004419, intron 3 of 3) intron (NM_004419, intron 3 of 3) 9449 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 313-88 chr11 85457139 85457321 + 2 NA intron (NM_001142699, intron 3 of 27) L1PA15|LINE|L1 170040 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 281-109 chr13 104835921 104836151 + 2 NA Intergenic Intergenic -629831 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 405-45 chr11 39832680 39832924 + 2 NA Intergenic Intergenic 460328 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 292-453 chr8 141841365 141841632 + 2 NA Intergenic Intergenic -55185 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 444-253 chr8 55148923 55149249 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 47058 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 387-154 chr2 5108257 5108535 + 2 NA Intergenic L1MB7|LINE|L1 -452174 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 323-565 chr8 136373776 136374050 + 2 NA Intergenic Intergenic -156885 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 395-5 chr1 62054308 62054696 + 2 NA intron (NM_001350145, intron 31 of 43) intron (NM_001350145, intron 31 of 43) -24284 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 283-313 chr4 34224631 34224895 + 2 NA intron (NR_147184, intron 2 of 3) L1MA3|LINE|L1 44984 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 402-197 chr22 26636721 26636978 + 2 NA Intergenic Intergenic 14886 NM_001886 1413 Hs.57690 NM_001886 ENSG00000196431 CRYBA4 CTRCT23|CYRBA4|MCOPCT4 crystallin beta A4 protein-coding 528-23 chr1 215146170 215146581 + 2 NA intron (NM_001017424, intron 3 of 6) intron (NM_001017424, intron 3 of 6) 63638 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 276-110 chr12 40656395 40656618 + 2 NA Intergenic Intergenic -35933 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 285-243 chr20 46624666 46624898 + 2 NA intron (NM_001193340, intron 2 of 12) intron (NM_001193340, intron 2 of 12) 26677 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 248-260 chr3 181110017 181110251 + 2 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) 53454 NR_075092 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 236-150 chr18 34778055 34778248 + 2 NA intron (NM_001198945, intron 4 of 10) intron (NM_001198945, intron 4 of 10) 22175 NM_001390 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 650-17 chr12 25593132 25593593 + 2 NA intron (NM_001352232, intron 1 of 10) L1PBa1|LINE|L1 -40079 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 316-553 chr8 90372939 90373130 + 2 NA intron (NR_051989, intron 3 of 3) L1MDb|LINE|L1 151546 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 430-147 chr2 103220265 103220577 + 2 NA Intergenic MER90|LTR|ERV1 -235992 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 277-362 chr6 145217639 145217891 + 2 NA Intergenic MER68|LTR|ERVL 469112 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 389-235 chr3 97750531 97750886 + 2 NA 3' UTR (NM_001080448, exon 18 of 18) 3' UTR (NM_001080448, exon 18 of 18) -13813 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 345-30 chr1 183761651 183761898 + 2 NA intron (NM_001297669, intron 3 of 18) Tigger1|DNA|TcMar-Tigger -43346 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 246-429 chr9 22693952 22694123 + 2 NA intron (NR_038977, intron 3 of 5) L4_C_Mam|LINE|RTE-X 47837 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 405-113 chr18 551869 552093 + 2 NA Intergenic L1MB3|LINE|L1 -28399 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 238-349 chr7 17010209 17010418 + 2 NA Intergenic Intergenic -128330 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 309-237 chr2 20791587 20791786 + 2 NA intron (NR_104233, intron 1 of 4) intron (NR_104233, intron 1 of 4) 31415 NM_001282720 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 362-181 chr16 31911390 31911620 + 2 NA intron (NR_049749, intron 4 of 4) L1M1|LINE|L1 37698 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 231-30 chr10 19067166 19067365 + 2 NA intron (NM_001142308, intron 2 of 39) Charlie19a|DNA|hAT-Charlie 18464 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 357-146 chr16 61862301 61862496 + 2 NA intron (NM_001796, intron 3 of 11) intron (NM_001796, intron 3 of 11) 174040 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 466-270 chr8 104563909 104564278 + 2 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 24931 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 453-201 chr5 28970843 28971250 + 2 NA Intergenic Intergenic 44176 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 337-125 chr12 117702434 117702702 + 2 NA intron (NM_173598, intron 4 of 19) intron (NM_173598, intron 4 of 19) 266422 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 198-227 chr7 35688609 35688765 + 2 NA intron (NM_022373, intron 2 of 8) intron (NM_022373, intron 2 of 8) 6448 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 405-233 chr4 93735513 93735855 + 2 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -93069 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 409-210 chr3 180128359 180128582 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -91533 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 228-330 chr8 10222993 10223216 + 2 NA intron (NM_001135670, intron 2 of 4) intron (NM_001135670, intron 2 of 4) 127453 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 332-326 chr3 67825776 67826023 + 2 NA intron (NR_109992, intron 3 of 6) L1ME3G|LINE|L1 -165693 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 360-240 chr2 150382070 150382332 + 2 NA Intergenic L1PB3|LINE|L1 105494 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 399-290 chr7 105979593 105979901 + 2 NA intron (NM_152750, intron 2 of 18) intron (NM_152750, intron 2 of 18) 16483 NM_152750 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 258-116 chr14 40332346 40332517 + 2 NA Intergenic L1MC1|LINE|L1 -622280 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 212-353 chr9 105575856 105576060 + 2 NA intron (NM_001351502, intron 5 of 13) intron (NM_001351502, intron 5 of 13) 17827 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 371-412 chr9 29930148 29930488 + 2 NA Intergenic LTR106_Mam|LTR|LTR 478136 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 139-35 chr17 14407276 14407365 + 2 NA Intergenic L1M5|LINE|L1 103580 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 444-169 chr4 49086065 49086417 + 2 NA Intergenic ALR/Alpha|Satellite|centr 99599 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 356-303 chr22 23062461 23062808 + 2 NA intron (NM_014433, intron 5 of 6) MER103C|DNA|hAT-Charlie -7885 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 705-39 chr17 70790992 70791404 + 2 NA Intergenic MER90|LTR|ERV1 410981 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 244-161 chr2 68179692 68179886 + 2 NA 3' UTR (NM_000945, exon 6 of 6) 3' UTR (NM_000945, exon 6 of 6) 21901 NM_001329917 56902 Hs.262858 NM_020143 ENSG00000115946 PNO1 KHRBP1|RRP20 partner of NOB1 homolog protein-coding 334-526 chr8 69203627 69203802 + 2 NA Intergenic Intergenic -99524 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 504-254 chr8 55633990 55634452 + 2 NA Intergenic Intergenic -113243 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 534-188 chr5 3465106 3465457 + 2 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) 12465 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 609 chr1 33777853 33778331 + 2 NA intron (NM_052896, intron 12 of 69) L2b|LINE|L2 -82383 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 591-148 chr6 55521090 55521603 + 2 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 57868 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 375-333 chr5 117970176 117970373 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) 239913 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 256-20 chr1 158925664 158925862 + 2 NA Intergenic L1MCa|LINE|L1 -5789 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 347-438 chr6 121887364 121887672 + 2 NA Intergenic Intergenic 451872 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 418-233 chr6 14087694 14088047 + 2 NA Intergenic Intergenic -29386 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 321-17 chr1 106809631 106809912 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -8468 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 233-315 chr5 128665189 128665368 + 2 NA Intergenic Intergenic -127033 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 540-141 chr3 30259429 30259890 + 2 NA Intergenic MIRb|SINE|MIR -259209 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 257-11 chr1 83703074 83703315 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 157352 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 457-223 chr7 3823413 3823718 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -306120 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 475-275 chr8 43817429 43817754 + 2 NA Intergenic ALR/Alpha|Satellite|centr 525149 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 545-79 chr15 61332517 61332974 + 2 NA Intergenic HAL1|LINE|L1 -103443 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 112-28 chr21 19911465 19911532 + 2 NA Intergenic Ricksha|DNA|MULE-MuDR -11743 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 286-339 chr5 11131914 11132137 + 2 NA intron (NM_001288715, intron 11 of 20) intron (NM_001288715, intron 11 of 20) -370791 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 343-389 chr4 61848103 61848368 + 2 NA intron (NM_001371343, intron 9 of 23) MLT1C|LTR|ERVL-MaLR 313530 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 262-212 chr2 103427061 103427273 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -442738 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 449-219 chr5 125614191 125614442 + 2 NA Intergenic Intergenic 121055 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 210-8 chr1 88877131 88877306 + 2 NA intron (NM_001514, intron 2 of 6) intron (NM_001514, intron 2 of 6) 14349 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 245-222 chr21 25932011 25932180 + 2 NA intron (NM_001136131, intron 11 of 15) intron (NM_001136131, intron 11 of 15) -196441 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 314-220 chr17 11272683 11272964 + 2 NA intron (NM_001173461, intron 2 of 3) intron (NM_001173461, intron 2 of 3) 31400 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 247-415 chr8 111159614 111159854 + 2 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) 76469 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 317-7 chr1 47340495 47340775 + 2 NA intron (NM_001136140, intron 1 of 4) intron (NM_001136140, intron 1 of 4) 6845 NR_046394 51727 Hs.731647 NM_016308 ENSG00000162368 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine/uridine monophosphate kinase 1 protein-coding 346-13 chr1 105726924 105727158 + 2 NA Intergenic Intergenic -108106 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 295-81 chr11 92811852 92812093 + 2 NA intron (NM_001008781, intron 12 of 24) intron (NM_001008781, intron 12 of 24) 103656 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 390-267 chr4 72834835 72835168 + 2 NA Intergenic L1PA14|LINE|L1 234715 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 244-342 chr7 34117600 34117829 + 2 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 212175 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 369-251 chr21 37579924 37580188 + 2 NA Intergenic L1M8|LINE|L1 159757 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 311-304 chr20 49171588 49171857 + 2 NA intron (NM_001322930, intron 1 of 12) intron (NM_001322930, intron 1 of 12) 16648 NM_001322930 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 416-251 chr4 85260749 85261072 + 2 NA Intergenic Intergenic -214240 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 228-26 chr1 194221293 194221463 + 2 NA Intergenic L1MA4|LINE|L1 916633 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 271-171 chr18 3037210 3037418 + 2 NA Intergenic Intergenic -25367 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 675-33 chr15 100232965 100233453 + 2 NA intron (NM_139057, intron 7 of 21) AluSq2|SINE|Alu 108766 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 358-456 chr7 136988447 136988689 + 2 NA intron (NM_001006626, intron 3 of 4) MIRb|SINE|MIR 85401 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 716-48 chr3 37633789 37634342 + 2 NA intron (NM_002207, intron 16 of 27) L1M1|LINE|L1 181924 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 331-23 chr1 177800300 177800475 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 99863 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 403-14 chr1 160533595 160533895 + 2 NA Intergenic L1MB4|LINE|L1 -10490 NM_052931 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 589-37 chr15 100821675 100822255 + 2 NA Intergenic L1MC5a|LINE|L1 -27787 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 519-258 chr9 119422409 119422820 + 2 NA Intergenic MIR3|SINE|MIR -53179 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 455-280 chr8 98796012 98796389 + 2 NA intron (NM_001256312, intron 3 of 12) L1P4|LINE|L1 29471 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 272-94 chr12 41556513 41556696 + 2 NA intron (NM_001164595, intron 7 of 9) Tigger3a|DNA|TcMar-Tigger 118865 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 278-379 chr6 124861165 124861399 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -101263 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 305-520 chr8 25835545 25835831 + 2 NA Intergenic MIRb|SINE|MIR 209725 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 424-187 chr4 40259585 40259946 + 2 NA Intergenic LTR9|LTR|ERV1 -47420 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 296-122 chr13 76958522 76958752 + 2 NA TTS (NM_001258406) TTS (NM_001258406) 10126 NM_001258406 730249 Hs.160789 NM_001258406 ENSG00000102794 ACOD1 CAD|IRG1 aconitate decarboxylase 1 protein-coding 265-21 chr1 189559244 189559408 + 2 NA Intergenic L1PREC2|LINE|L1 916684 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 538-66 chr14 51265874 51266200 + 2 NA Intergenic Intergenic 25790 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 411-321 chrX 77032192 77032571 + 2 NA Intergenic L1M2|LINE|L1 -17849 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 285-428 chr8 123602635 123602863 + 2 NA Intergenic MIRb|SINE|MIR 51052 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 253-4 chr1 38414025 38414206 + 2 NA Intergenic L1MC3|LINE|L1 -61081 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 338-149 chr13 54651366 54651658 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -339464 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 252-433 chr8 116483113 116483278 + 2 NA Intergenic L1MA8|LINE|L1 -158136 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 325-477 chr6 114751257 114751440 + 2 NA Intergenic Intergenic -688471 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 323-388 chr5 6683879 6684113 + 2 NA Intergenic Intergenic 23715 NR_103771 100505625 Hs.550028 NR_103771 ENSG00000248677 LINC02102 - long intergenic non-protein coding RNA 2102 ncRNA 382-249 chr22 32014732 32015062 + 2 NA intron (NR_149128, intron 4 of 4) L1ME4a|LINE|L1 -28364 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 302-376 chr6 47085156 47085345 + 2 NA Intergenic MER96B|DNA|hAT-Tip100 -42918 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 293-335 chr5 56405806 56406066 + 2 NA Intergenic Intergenic 75833 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 561-50 chr12 116643848 116644281 + 2 NA Intergenic AluSz6|SINE|Alu 84683 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 362-405 chr7 81882518 81882768 + 2 NA Intergenic Intergenic -112596 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 196-164 chr3 2517335 2517514 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 278595 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 241-156 chr18 39026433 39026591 + 2 NA Intergenic Intergenic 595663 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 455-84 chr15 96079384 96079667 + 2 NA Intergenic Intergenic 48316 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 401-77 chr13 76090278 76090614 + 2 NA Intergenic L1MEg|LINE|L1 -155314 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 548-226 chr8 32500372 32500835 + 2 NA intron (NM_013962, intron 1 of 4) MER31-int|LTR|ERV1 -47607 NM_013958 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 496-74 chr14 25260437 25260889 + 2 NA Intergenic Intergenic -210366 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 407-97 chr16 10804631 10804914 + 2 NA intron (NR_134903, intron 1 of 8) intron (NR_134903, intron 1 of 8) 14022 NR_134901 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A protein-coding 509-80 chr15 93763843 93764201 + 2 NA Intergenic Intergenic -92538 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 605-109 chr7 37716500 37716992 + 2 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 32980 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 321-413 chr4 53312880 53313192 + 2 NA intron (NM_152540, intron 3 of 8) intron (NM_152540, intron 3 of 8) 53025 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 237-129 chr16 8296875 8297082 + 2 NA Intergenic L2b|LINE|L2 292860 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 181-141 chr6 71725159 71725258 + 2 NA Intergenic Intergenic -161495 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 641-31 chr12 101521195 101521743 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 46133 NM_152323 121599 Hs.577097 NM_152323 ENSG00000166211 SPIC SPI-C Spi-C transcription factor protein-coding 229-61 chr11 36315632 36315787 + 2 NA intron (NM_001160167, intron 1 of 8) hAT-N1_Mam|DNA|hAT-Tip100? 19421 NM_001160167 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 320-329 chr22 35095282 35095559 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 29262 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 254-454 chrX 139027992 139028235 + 2 NA intron (NM_001139501, intron 2 of 7) L1ME4a|LINE|L1 -160558 NM_001139502 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 312-296 chr20 54393858 54394073 + 2 NA Intergenic L1ME2|LINE|L1 -81628 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 216-247 chr4 59280858 59281044 + 2 NA Intergenic Intergenic 267378 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 315-374 chr5 40048747 40049024 + 2 NA Intergenic Intergenic -3406 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 148-80 chr6 126500362 126500470 + 2 NA Intergenic Intergenic 15785 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 356-399 chr5 67355021 67355297 + 2 NA Intergenic LFSINE_Vert|SINE|tRNA -158360 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 321-95 chr11 33277027 33277282 + 2 NA intron (NM_001278162, intron 1 of 15) intron (NM_001278162, intron 1 of 15) 18823 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 476-14 chr1 199959059 199959387 + 2 NA Intergenic Intergenic -68487 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 284-27 chr10 21497522 21497782 + 2 NA promoter-TSS (NR_160800) promoter-TSS (NR_160800) -392 NR_160800 399726 Hs.315568 NM_001010911 ENSG00000204682 MIR1915HG C10orf114|CASC10|bA418C1.3 MIR1915 host gene ncRNA 666-85 chr4 73757970 73758516 + 2 NA Intergenic L1MB3|LINE|L1 17674 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 362-108 chr12 20094070 20094268 + 2 NA intron (NR_040098, intron 2 of 2) L1PBa1|LINE|L1 33732 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 396-37 chr1 226391304 226391544 + 2 NA intron (NM_001618, intron 3 of 22) intron (NM_001618, intron 3 of 22) 16669 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 208-240 chr7 6704240 6704394 + 2 NA intron (NM_006956, intron 2 of 5) AluSx1|SINE|Alu 2630 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 524-138 chr21 30077917 30078377 + 2 NA Intergenic Intergenic 88658 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 274-414 chr9 105124767 105124974 + 2 NA Intergenic L1ME1|LINE|L1 -119735 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 601-38 chr14 50881583 50882037 + 2 NA intron (NM_001206673, intron 5 of 12) intron (NM_001206673, intron 5 of 12) 9650 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 409-291 chr8 64610284 64610536 + 2 NA intron (NM_004820, intron 4 of 5) intron (NM_004820, intron 4 of 5) -28518 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 562-103 chr2 40445416 40445847 + 2 NA intron (NM_001112802, intron 1 of 7) MIR3|SINE|MIR 6053 NM_001351488 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 443-293 chr8 109432854 109433213 + 2 NA intron (NM_177531, intron 27 of 77) intron (NM_177531, intron 27 of 77) 70572 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 517-167 chr21 38882244 38882640 + 2 NA intron (NR_120405, intron 3 of 3) L1ME3|LINE|L1 24903 NR_109926 101928398 Hs.122403 NR_109926 LOC101928398 - uncharacterized LOC101928398 ncRNA 231-252 chr4 48599013 48599175 + 2 NA intron (NM_015030, intron 13 of 63) intron (NM_015030, intron 13 of 63) 108842 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 290-160 chr16 72756352 72756597 + 2 NA Intergenic Intergenic -91504 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 321-414 chr4 58188922 58189215 + 2 NA Intergenic Intergenic 347260 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 438-277 chr8 99105772 99106131 + 2 NA intron (NR_047582, intron 6 of 8) intron (NR_047582, intron 6 of 8) 92685 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 490-78 chr13 34025962 34026366 + 2 NA Intergenic Intergenic 208015 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 497-245 chr6 49753426 49753799 + 2 NA Intergenic L1PREC2|LINE|L1 -9157 NM_001190986 10321 Hs.404466 NM_006061 ENSG00000096006 CRISP3 Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 cysteine rich secretory protein 3 protein-coding 272-232 chr2 213558291 213558474 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -199685 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 480-121 chr18 20938634 20939046 + 2 NA Intergenic ALR/Alpha|Satellite|centr 172973 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 226-279 chr5 54653861 54653994 + 2 NA Intergenic L2a|LINE|L2 49397 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 241-62 chr11 35781578 35781773 + 2 NA intron (NM_017583, intron 4 of 4) intron (NM_017583, intron 4 of 4) 118900 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 340-473 chr6 45447378 45447694 + 2 NA intron (NM_001015051, intron 5 of 7) intron (NM_001015051, intron 5 of 7) 25261 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 289-491 chr9 96298061 96298286 + 2 NA intron (NM_000197, intron 2 of 10) MER20B|DNA|hAT-Charlie 4003 NM_000197 3293 Hs.477 NM_000197 ENSG00000130948 HSD17B3 EDH17B3|SDR12C2 hydroxysteroid 17-beta dehydrogenase 3 protein-coding 260-408 chr7 49649088 49649338 + 2 NA Intergenic Intergenic -124425 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 280-83 chr12 15264066 15264260 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -42746 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 520-29 chr10 29652290 29652649 + 2 NA intron (NM_001323599, intron 3 of 38) L1MB8|LINE|L1 -17498 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 290-385 chr6 54114030 54114318 + 2 NA intron (NM_001281747, intron 1 of 13) L2a|LINE|L2 2731 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 246-331 chr5 98397639 98397795 + 2 NA Intergenic Intergenic -236478 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 371-127 chr16 27875131 27875498 + 2 NA intron (NM_001323901, intron 2 of 5) LTR16C|LTR|ERVL 12843 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 269-227 chr20 56307874 56308068 + 2 NA Intergenic Intergenic -51003 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 428-227 chr5 41333087 41333491 + 2 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -71820 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 321-280 chr2 34454492 34454754 + 2 NA Intergenic L1MA2|LINE|L1 -222934 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 340-185 chr16 13250578 13250843 + 2 NA Intergenic Intergenic 349112 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 323-192 chr18 934887 935115 + 2 NA Intergenic Intergenic -7008 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 268-322 chr5 116172016 116172271 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) -83600 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 330-78 chr10 123385637 123385883 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 231358 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 186-72 chr19 53259416 53259556 + 2 NA exon (NM_173856, exon 1 of 1) exon (NM_173856, exon 1 of 1) 1194 NM_173856 317701 Hs.553684 NM_173856 ENSG00000196131 VN1R2 V1RL2 vomeronasal 1 receptor 2 protein-coding 200-135 chr2 84767927 84768078 + 2 NA intron (NM_001370, intron 64 of 76) L1MEg|LINE|L1 113082 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 357-204 chr2 73530943 73531197 + 2 NA intron (NM_015120, intron 11 of 22) THE1D-int|LTR|ERVL-MaLR 73967 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 548-77 chr14 68721169 68721634 + 2 NA Intergenic AluSz|SINE|Alu 72513 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 295-192 chr19 51920654 51920838 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -6726 NM_024840 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 231-363 chr8 130463325 130463469 + 2 NA Intergenic L1ME3|LINE|L1 -19723 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 352-314 chr3 39510477 39510712 + 2 NA intron (NR_103505, intron 4 of 6) L1ME1|LINE|L1 8528 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 220-221 chr3 47963484 47963688 + 2 NA intron (NM_002375, intron 3 of 18) intron (NM_002375, intron 3 of 18) 114031 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 387-281 chr5 60739861 60740232 + 2 NA Intergenic L1M1|LINE|L1 -39880 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 476-190 chr4 18325379 18325717 + 2 NA Intergenic L3|LINE|CR1 -303673 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 149-4 chr1 83961041 83961119 + 2 NA intron (NM_001350214, intron 1 of 21) intron (NM_001350214, intron 1 of 21) 38052 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 564-162 chr5 141374595 141374977 + 2 NA exon (NM_032086, exon 1 of 1) exon (NM_032086, exon 1 of 1) 702 NM_032086 56109 Hs.368160 NM_018919 ENSG00000253731 PCDHGA6 PCDH-GAMMA-A6 protocadherin gamma subfamily A, 6 protein-coding 231-371 chr8 140991339 140991565 + 2 NA intron (NM_001352737, intron 1 of 32) intron (NM_001352737, intron 1 of 32) 9552 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 499-141 chr20 6223385 6223879 + 2 NA Intergenic L1MC3|LINE|L1 -100088 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 506-205 chr4 63077111 63077452 + 2 NA Intergenic L1PA14|LINE|L1 -915516 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 194-217 chr8 132020253 132020422 + 2 NA Intergenic L1MA9|LINE|L1 39045 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 227-280 chr5 36942803 36942984 + 2 NA intron (NM_015384, intron 1 of 45) L3|LINE|CR1 66124 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 227-339 chr7 31820021 31820180 + 2 NA intron (NM_001191059, intron 15 of 18) intron (NM_001191059, intron 15 of 18) 132885 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 359-487 chr8 126538038 126538385 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 20267 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 462-73 chr13 107676606 107676927 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -145518 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 283-30 chr1 185613314 185613533 + 2 NA intron (NR_110793, intron 2 of 3) L1MA3|LINE|L1 15065 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 792-2 chr1 77364266 77364757 + 2 NA intron (NM_012093, intron 6 of 13) L1MA5A|LINE|L1 81424 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 212-104 chr14 87022287 87022450 + 2 NA Intergenic L1ME3F|LINE|L1 116590 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 369-120 chr14 70544258 70544544 + 2 NA Intergenic L1M5|LINE|L1 -9397 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 147-70 chr5 17648664 17648772 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR 6920 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 322-197 chr17 22726061 22726287 + 2 NA Intergenic ALR/Alpha|Satellite|centr 203063 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 323-284 chr2 210765375 210765659 + 2 NA Intergenic Intergenic 147946 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 213-211 chr4 83206727 83206913 + 2 NA Intergenic HERVFH19-int|LTR|ERV1 77975 NM_001358921 27235 Hs.144304 NM_015697 ENSG00000173085 COQ2 CL640|COQ10D1|MSA1|PHB:PPT coenzyme Q2, polyprenyltransferase protein-coding 655-81 chr3 109518803 109519332 + 2 NA Intergenic Intergenic -83761 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 273-22 chr1 167523948 167524150 + 2 NA Intergenic L1ME1|LINE|L1 -5439 NM_198053 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 189-117 chr21 28080018 28080177 + 2 NA intron (NR_126010, intron 1 of 4) L2a|LINE|L2 -10306 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 333-607 chr9 102009840 102010111 + 2 NA Intergenic L1PA15|LINE|L1 -271395 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 416-12 chr1 143250400 143250655 + 2 NA Intergenic Intergenic 172065 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 330-189 chr16 51478395 51478685 + 2 NA Intergenic L1MA6|LINE|L1 -283979 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 409-267 chr6 141632303 141632645 + 2 NA Intergenic Intergenic 456325 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 190-29 chr11 95274089 95274237 + 2 NA Intergenic Intergenic -41688 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 484-95 chr17 58613850 58614162 + 2 NA intron (NM_031272, intron 8 of 31) intron (NM_031272, intron 8 of 31) -69678 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 313-301 chr2 240665045 240665267 + 2 NA Intergenic L1MC3|LINE|L1 17729 NM_001102467 653437 Hs.437167 NM_001102467 ENSG00000185176 AQP12B INSSA3 aquaporin 12B protein-coding 396-56 chr10 71149860 71150120 + 2 NA Intergenic Intergenic -62580 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 393-73 chr12 41515030 41515276 + 2 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 77414 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 576 chr1 49704253 49704650 + 2 NA intron (NM_001323575, intron 2 of 12) L1ME1|LINE|L1 -232366 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 299-46 chr10 33943464 33943668 + 2 NA Intergenic Intergenic -170886 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 320-354 chr3 89858675 89858979 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 751206 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 260-63 chr10 107720518 107720722 + 2 NA Intergenic Intergenic 348673 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 273-301 chr3 140685856 140686120 + 2 NA intron (NM_152616, intron 2 of 4) intron (NM_152616, intron 2 of 4) 7924 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 236-286 chr5 62941337 62941516 + 2 NA Intergenic L1ME5|LINE|L1 362607 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 627-39 chr16 79216187 79216639 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 384324 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 325-397 chr4 72185083 72185360 + 2 NA Intergenic Intergenic 146089 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 349-287 chr20 16193170 16193469 + 2 NA Intergenic Intergenic -207437 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 198-262 chrX 11627096 11627261 + 2 NA intron (NR_109776, intron 1 of 14) L1ME3Cz|LINE|L1 38742 NM_006125 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 422-22 chr1 236437225 236437605 + 2 NA intron (NM_080738, intron 4 of 5) intron (NM_080738, intron 4 of 5) 42002 NM_080738 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 547-52 chr12 82472160 82472650 + 2 NA intron (NR_144942, intron 8 of 10) AluY|SINE|Alu -113600 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 277-54 chr10 54723664 54723865 + 2 NA intron (NM_001354404, intron 4 of 34) L1PB4|LINE|L1 77467 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 631-15 chr10 5156577 5157049 + 2 NA intron (NR_027916, intron 7 of 7) Charlie2b|DNA|hAT-Charlie 28374 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 627-67 chr22 28482962 28483513 + 2 NA intron (NM_001145418, intron 2 of 22) L2a|LINE|L2 23368 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 402-282 chr5 117390588 117390936 + 2 NA Intergenic Intergenic -24750 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 403-37 chr10 111620319 111620655 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 506196 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 519-88 chr19 3795861 3796179 + 2 NA intron (NM_002378, intron 1 of 13) AluSz|SINE|Alu 5779 NM_002378 4145 Hs.631845 NM_002378 ENSG00000007264 MATK CHK|CTK|HHYLTK|HYL|HYLTK|Lsk megakaryocyte-associated tyrosine kinase protein-coding 359-148 chr14 85757438 85757690 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -177114 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 549-9 chr1 111842560 111842940 + 2 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 14155 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 340-406 chr4 82137584 82137814 + 2 NA Intergenic L1MA9|LINE|L1 236292 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 375-278 chr4 8338801 8339134 + 2 NA Intergenic Intergenic 18791 NR_149125 105374374 Hs.145224 NR_149125 ENSG00000249145 LINC02517 - long intergenic non-protein coding RNA 2517 ncRNA 171-53 chr2 74854565 74854714 + 2 NA intron (NM_000189, intron 2 of 17) intron (NM_000189, intron 2 of 17) 21984 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 322-248 chr2 67948978 67949217 + 2 NA Intergenic HAL1|LINE|L1 113907 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 277-200 chr2 83048022 83048180 + 2 NA Intergenic L1M6|LINE|L1 191298 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 339-416 chr4 94315949 94316268 + 2 NA intron (NM_014485, intron 3 of 5) L2a|LINE|L2 26728 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 525-64 chr13 31638982 31639376 + 2 NA Intergenic L1M4b|LINE|L1 -100347 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 253-17 chr1 118656946 118657142 + 2 NA Intergenic L1MEd|LINE|L1 331299 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 355-70 chr10 120761191 120761413 + 2 NA TTS (NR_033850) TTS (NR_033850) 89877 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 372-100 chr12 8786657 8786871 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -35857 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 184-175 chr8 117350901 117351011 + 2 NA Intergenic L1MA9|LINE|L1 -169757 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 221-61 chr12 29505619 29505796 + 2 NA 3' UTR (NM_001193451, exon 18 of 18) 3' UTR (NM_001193451, exon 18 of 18) -6014 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 628-32 chr12 4212254 4212595 + 2 NA Intergenic Intergenic -61338 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 376-156 chr18 66029470 66029727 + 2 NA Intergenic L1MC3|LINE|L1 278586 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 343-102 chr12 39970726 39971020 + 2 NA intron (NM_052885, intron 3 of 9) L4_B_Mam|LINE|RTE-X 135208 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 492-271 chr8 134203530 134203934 + 2 NA Intergenic AluSp|SINE|Alu 317236 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 339-284 chr2 163525036 163525358 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 210811 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 220-196 chr2 234782160 234782333 + 2 NA Intergenic Intergenic 99578 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 310-69 chr10 131278993 131279230 + 2 NA intron (NM_174937, intron 3 of 11) intron (NM_174937, intron 3 of 11) 32610 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 356-503 chr9 72150510 72150791 + 2 NA intron (NM_001351571, intron 1 of 13) intron (NM_001351571, intron 1 of 13) 1210 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 397-45 chr10 116308906 116309191 + 2 NA Intergenic L1MA9|LINE|L1 -15400 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 293-197 chr2 112329439 112329618 + 2 NA intron (NM_198581, intron 11 of 11) intron (NM_198581, intron 11 of 11) 53931 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 405-63 chr12 66019193 66019482 + 2 NA Intergenic MIR3|SINE|MIR 4389 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 362-15 chr1 83019039 83019329 + 2 NA intron (NR_147074, intron 5 of 10) (TA)n|Simple_repeat|Simple_repeat -32976 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 434-41 chr10 89134499 89134775 + 2 NA Intergenic L1M5|LINE|L1 -71226 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 320-194 chr16 64858083 64858352 + 2 NA Intergenic Intergenic 263846 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 198-165 chr3 83450523 83450708 + 2 NA Intergenic Intergenic 1418960 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 264-289 chr4 32573658 32573857 + 2 NA Intergenic L1MA5A|LINE|L1 222719 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 353-182 chr16 82314275 82314611 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -144219 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 568-205 chr9 37681364 37681839 + 2 NA intron (NM_001371223, intron 1 of 15) MER124|DNA?|DNA? 13592 NM_001371223 213-42 chr10 66417060 66417168 + 2 NA intron (NM_001127384, intron 11 of 17) L1MA4A|LINE|L1 -508922 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 252-259 chr3 50399347 50399552 + 2 NA intron (NM_001291101, intron 3 of 37) intron (NM_001291101, intron 3 of 37) 34086 NR_111913 11068 Hs.149443 NM_007022 ENSG00000114395 CYB561D2 101F6|TSP10|XXcos-LUCA11.4 cytochrome b561 family member D2 protein-coding 412-7 chr1 64791782 64792109 + 2 NA intron (NM_001366165, intron 5 of 11) intron (NM_001366165, intron 5 of 11) 46870 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 349-17 chr1 87664707 87664909 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -293153 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 320-29 chr1 177468978 177469176 + 2 NA Intergenic AluSx3|SINE|Alu 117491 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 304-18 chr1 114856353 114856570 + 2 NA intron (NM_001282542, intron 2 of 30) intron (NM_001282542, intron 2 of 30) 1598 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 212-318 chr8 33118740 33118891 + 2 NA Intergenic MIR3|SINE|MIR 354331 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 273-482 chrX 77020924 77021118 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -6489 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 304-540 chr8 135058876 135059151 + 2 NA Intergenic L1MC1|LINE|L1 -175118 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 379-277 chr5 123544168 123544521 + 2 NA intron (NM_001364141, intron 2 of 14) MER83|LTR|ERV1 -1073 NM_001044723 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 299-42 chr10 25891624 25891817 + 2 NA Intergenic LTR1F1|LTR|ERV1 41990 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 325-210 chr16 83755500 83755731 + 2 NA intron (NM_001220489, intron 10 of 12) L1ME3A|LINE|L1 48361 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 580-11 chr1 217816218 217816734 + 2 NA intron (NM_138796, intron 9 of 10) intron (NM_138796, intron 9 of 10) -31356 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 296-432 chr7 16934971 16935213 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -53109 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 716-72 chr5 173368277 173368755 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger 21061 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 424-301 chrX 99860750 99861140 + 2 NA Intergenic L1ME3D|LINE|L1 549328 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 278-465 chrX 82826021 82826197 + 2 NA Intergenic Intergenic -682181 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 281-16 chr1 171881731 171881967 + 2 NA intron (NM_001278252, intron 1 of 14) intron (NM_001278252, intron 1 of 14) 17657 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 118-65 chr8 142906009 142906087 + 2 NA Intergenic HERVL74-int|LTR|ERVL 11795 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 423-159 chr21 28676129 28676406 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 136949 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 353-111 chr12 46681946 46682143 + 2 NA Intergenic Intergenic 143953 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 253-52 chr10 56698184 56698366 + 2 NA Intergenic MIR3|SINE|MIR -337002 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 185-8 chr1 170949548 170949712 + 2 NA intron (NM_001163629, intron 3 of 21) intron (NM_001163629, intron 3 of 21) 14096 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 390-121 chr15 100375675 100375894 + 2 NA intron (NR_120374, intron 1 of 4) L1MC|LINE|L1 2845 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 562-167 chr5 23922995 23923389 + 2 NA Intergenic Intergenic -28156 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 377-261 chr22 34825645 34825957 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 172115 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 184-69 chr16 59646496 59646652 + 2 NA Intergenic L2c|LINE|L2 108617 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 613-113 chr6 39590285 39590776 + 2 NA intron (NM_001289020, intron 7 of 21) AluSq2|SINE|Alu 134878 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 578-128 chr4 57801534 57801984 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 375887 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 497-55 chr12 37668950 37669431 + 2 NA Intergenic ALR/Alpha|Satellite|centr -647584 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 302-379 chr6 52283869 52284081 + 2 NA intron (NR_158964, intron 1 of 17) intron (NR_158964, intron 1 of 17) 767 NM_001366370 4172 Hs.179565 NM_002388 ENSG00000112118 MCM3 HCC5|P1-MCM3|P1.h|RLFB minichromosome maintenance complex component 3 protein-coding 433-203 chr4 60277233 60277539 + 2 NA Intergenic L1MA9|LINE|L1 -645233 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 307-323 chr3 181302677 181302897 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 71050 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 241-175 chr2 17171484 17171667 + 2 NA Intergenic Intergenic 346865 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 281-67 chr11 57383981 57384162 + 2 NA Intergenic AluSx1|SINE|Alu -2921 NM_006093 10394 Hs.251386 NM_006093 ENSG00000156575 PRG3 MBP2|MBPH proteoglycan 3, pro eosinophil major basic protein 2 protein-coding 405-108 chr17 33573998 33574270 + 2 NA intron (NM_001094, intron 1 of 9) L1M5|LINE|L1 -40374 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 333-484 chr5 163658539 163658781 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 153041 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 282-84 chr12 5845593 5845751 + 2 NA intron (NM_001278596, intron 4 of 25) intron (NM_001278596, intron 4 of 25) 99587 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 324-475 chr6 144946452 144946730 + 2 NA Intergenic Intergenic 540936 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 397-126 chr18 21191949 21192222 + 2 NA Intergenic LTR16B2|LTR|ERVL -50157 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 317-374 chr5 12914274 12914553 + 2 NA intron (NR_147005, intron 2 of 4) HERVL-int|LTR|ERVL 118473 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 506-32 chr10 29168922 29169366 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -119926 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 335-117 chr12 15773409 15773616 + 2 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 15876 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 373-210 chr2 141032631 141032913 + 2 NA intron (NM_018557, intron 11 of 90) intron (NM_018557, intron 11 of 90) -446087 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 593-148 chr8 71118633 71119037 + 2 NA Intergenic MER34C2|LTR|ERV1 237871 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 112-50 chr8 85449344 85449413 + 2 NA TTS (NM_005181) TTS (NM_005181) 10519 NM_005181 761 Hs.82129 NM_005181 ENSG00000164879 CA3 CAIII|Car3 carbonic anhydrase 3 protein-coding 342-262 chr2 161520581 161520827 + 2 NA Intergenic L1MB3|LINE|L1 -12802 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 203-222 chr7 69963705 69963871 + 2 NA intron (NM_015570, intron 2 of 18) MIRb|SINE|MIR 365313 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 252-57 chr11 6304382 6304535 + 2 NA Intergenic Intergenic 16043 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 CAVIN3 HSRBC|PRKCDBP|SRBC|cavin-3 caveolae associated protein 3 protein-coding 234-300 chr5 13972561 13972731 + 2 NA Intergenic L1PB1|LINE|L1 -28166 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 385-82 chr13 57609196 57609473 + 2 NA Intergenic Intergenic -22410 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 357-28 chr10 10680845 10681128 + 2 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 113928 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 299-351 chr5 9141706 9141953 + 2 NA intron (NM_003966, intron 12 of 22) intron (NM_003966, intron 12 of 22) -87934 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 311-422 chr5 133217971 133218278 + 2 NA intron (NM_015082, intron 12 of 15) L2a|LINE|L2 166111 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 497-217 chr5 15853799 15854288 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -81139 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 487-195 chr3 153559773 153560254 + 2 NA intron (NR_146713, intron 4 of 6) L1P3|LINE|L1 75518 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 657-48 chr2 76630970 76631488 + 2 NA Intergenic L1MCb|LINE|L1 -354736 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 305-254 chr2 60374038 60374223 + 2 NA intron (NR_132991, intron 2 of 3) Arthur1|DNA|hAT-Tip100 8906 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 481-321 chrX 64120837 64121156 + 2 NA Intergenic L1MD|LINE|L1 84712 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 354-198 chr2 6799818 6800014 + 2 NA Intergenic Intergenic -29605 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 505-55 chr11 127912500 127912921 + 2 NA Intergenic L1PB1|LINE|L1 -296056 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 377-434 chrX 58223325 58223560 + 2 NA Intergenic HSAT4|Satellite|centr -312809 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 302-300 chr3 155441679 155441927 + 2 NA Intergenic Intergenic -44000 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 214-73 chr11 133588084 133588247 + 2 NA Intergenic Intergenic -55664 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 485-210 chr4 95456437 95456884 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 92313 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 467-114 chr18 11416022 11416351 + 2 NA Intergenic Intergenic -38292 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 207-68 chr12 64524830 64524976 + 2 NA Intergenic Intergenic 72783 NM_013254 29110 Hs.505874 NM_013254 ENSG00000183735 TBK1 FTDALS4|IIAE8|NAK|T2K TANK binding kinase 1 protein-coding 382-204 chr2 105729714 105730066 + 2 NA Intergenic Intergenic -15022 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 376-192 chr2 103198936 103199169 + 2 NA Intergenic Intergenic -214623 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 563-121 chr3 37593294 37593758 + 2 NA intron (NM_002207, intron 15 of 27) MLT1A|LTR|ERVL-MaLR 141385 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 174-155 chr9 80419915 80420058 + 2 NA Intergenic L1PREC2|LINE|L1 444963 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 498-147 chr2 229416006 229416367 + 2 NA intron (NM_139072, intron 9 of 12) L1MEj|LINE|L1 -144899 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 172-22 chr10 127778672 127778805 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 41553 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 248-281 chr4 65935067 65935203 + 2 NA Intergenic Intergenic -264640 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 366-199 chr2 65883100 65883430 + 2 NA Intergenic AluY|SINE|Alu -450666 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 437-232 chr5 156414815 156415114 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 87800 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 352-439 chr5 163656610 163656897 + 2 NA Intergenic L3|LINE|CR1 151134 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 323-57 chr10 64337521 64337794 + 2 NA Intergenic Intergenic -487871 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 314-313 chr2 181423930 181424201 + 2 NA Intergenic Intergenic -32827 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 334-23 chr1 113295626 113295860 + 2 NA Intergenic L1MA8|LINE|L1 -89490 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 465-81 chr14 56035437 56035856 + 2 NA Intergenic MIR|SINE|MIR -82765 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 1221-3 chr21 23347113 23347820 + 2 NA Intergenic Intergenic 37369 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 137-39 chr19 27672725 27672823 + 2 NA Intergenic HSAT4|Satellite|centr -120657 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 175-175 chr8 137408379 137408520 + 2 NA intron (NR_125428, intron 1 of 2) intron (NR_125428, intron 1 of 2) 5139 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 525-122 chr2 98492733 98493245 + 2 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 46979 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 300-421 chr7 40161369 40161587 + 2 NA intron (NM_024728, intron 1 of 14) intron (NM_024728, intron 1 of 14) 26502 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 436-328 chr9 82354325 82354669 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy 365725 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 1022-11 chr14 47139116 47139849 + 2 NA intron (NM_001113498, intron 4 of 16) intron (NM_001113498, intron 4 of 16) 203764 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 458-198 chr5 22355878 22356237 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -142207 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 309-282 chr2 184296027 184296267 + 2 NA Intergenic Intergenic -82828 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 230-198 chr2 224425284 224425431 + 2 NA Intergenic Intergenic -23250 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 284-363 chr6 164251752 164251903 + 2 NA Intergenic Intergenic 570236 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 218-57 chr11 86564706 86564870 + 2 NA intron (NM_001014811, intron 1 of 13) L1MB4|LINE|L1 107410 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 375-47 chr10 51458702 51459037 + 2 NA intron (NM_001098512, intron 2 of 17) MER8|DNA|TcMar-Tigger 159296 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 342-464 chr6 101297902 101298115 + 2 NA Intergenic Intergenic -100977 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 274-197 chr2 41270707 41270974 + 2 NA Intergenic LTR50|LTR|ERVL -606715 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 603-50 chr14 63715868 63716372 + 2 NA intron (NM_030791, intron 1 of 2).2 L1MEc|LINE|L1 11945 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 612-112 chr5 63013135 63013513 + 2 NA Intergenic Intergenic 434505 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 377-209 chr2 107957108 107957406 + 2 NA Intergenic L1M4|LINE|L1 -29267 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 280-92 chr12 67198631 67198838 + 2 NA Intergenic AluSx1|SINE|Alu -70624 NM_018448 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 184-112 chr3 76377532 76377714 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac -592074 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 291-51 chr10 57379101 57379303 + 2 NA Intergenic L1PB4|LINE|L1 -74643 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 426-123 chr2 12529113 12529467 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -187582 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 346-226 chr2 11414504 11414772 + 2 NA Intergenic Intergenic 20657 NR_047499 100874055 Hs.102428 NR_047499 ENSG00000224177 LINC00570 ncRNA-a5 long intergenic non-protein coding RNA 570 ncRNA 466-91 chr16 13863412 13863740 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -56581 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 303-135 chr14 86186592 86186833 + 2 NA Intergenic MER102c|DNA|hAT-Charlie 252034 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 228-349 chr8 121800507 121800718 + 2 NA Intergenic Intergenic -159172 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 374-18 chr1 188614281 188614471 + 2 NA Intergenic L1MA9|LINE|L1 1170748 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 359-88 chr11 55064716 55065051 + 2 NA Intergenic ALR/Alpha|Satellite|centr -197272 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 352-301 chr22 28512080 28512399 + 2 NA intron (NM_001145418, intron 2 of 22) L1PA11|LINE|L1 52370 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 356-269 chr2 183383940 183384288 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 259671 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 238-404 chr8 139353791 139353985 + 2 NA Intergenic L1MEf|LINE|L1 349235 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 352-135 chr14 33301527 33301799 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 362784 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 233-310 chr5 111678650 111678858 + 2 NA intron (NR_040093, intron 2 of 6) intron (NR_040093, intron 2 of 6) 77497 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 533-120 chr20 43858085 43858471 + 2 NA Intergenic L1ME3G|LINE|L1 -36440 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 881-42 chr9 75383531 75384294 + 2 NA Intergenic Intergenic 295398 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 445-103 chr18 43444102 43444499 + 2 NA Intergenic Intergenic -166810 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 399-154 chr2 100318033 100318365 + 2 NA intron (NM_198461, intron 1 of 11) L1ME3|LINE|L1 4534 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 192-198 chr7 128061150 128061288 + 2 NA intron (NM_014390, intron 16 of 23) intron (NM_014390, intron 16 of 23) -20642 NR_030324 693178 NR_030324 ENSG00000207588 MIR593 MIRN593|hsa-mir-593 microRNA 593 ncRNA 468-21 chr10 21454866 21455257 + 2 NA Intergenic Intergenic 41580 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 347-113 chr13 85028728 85029034 + 2 NA Intergenic Intergenic 119176 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 388-103 chr14 31646635 31646916 + 2 NA intron (NM_001201573, intron 2 of 8) L1MA4|LINE|L1 -67794 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 469-68 chr12 70139334 70139633 + 2 NA Intergenic MER84-int|LTR|ERV1 -103547 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 248-184 chr2 66717061 66717200 + 2 NA Intergenic Intergenic -13903 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 472-185 chr20 19704260 19704595 + 2 NA intron (NM_020689, intron 15 of 16) L2a|LINE|L2 -182094 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 237-140 chr17 12706694 12706853 + 2 NA promoter-TSS (NR_104605) promoter-TSS (NR_104605) -638 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 210-45 chr11 72999944 73000051 + 2 NA intron (NM_014824, intron 5 of 19) intron (NM_014824, intron 5 of 19) 142321 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 206-161 chr3 70074240 70074417 + 2 NA Intergenic Intergenic 74584 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 334-255 chr2 42412795 42413075 + 2 NA Intergenic AluY|SINE|Alu -43978 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 413-79 chr13 97840627 97840974 + 2 NA Intergenic Intergenic -112875 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 187-70 chr17 74436828 74436956 + 2 NA intron (NM_018653, intron 1 of 3) intron (NM_018653, intron 1 of 3) 3195 NM_018653 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 251-95 chr14 58984628 58984805 + 2 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 156428 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 551-83 chr2 26226940 26227346 + 2 NA intron (NM_000182, intron 7 of 19) L1ME1|LINE|L1 17489 NM_000182 3030 Hs.516032 NM_000182 ENSG00000084754 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha protein-coding 229-338 chr6 97111751 97111971 + 2 NA intron (NM_001323256, intron 7 of 7) LTR1E|LTR|ERV1 101785 NM_001323263 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 557-212 chr9 7877864 7878270 + 2 NA Intergenic Intergenic -78289 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 363-229 chr2 146757956 146758180 + 2 NA Intergenic Intergenic 171011 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 235-96 chr14 33322029 33322215 + 2 NA intron (NM_173159, intron 3 of 11) L2a|LINE|L2 383243 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 249-196 chr2 72663698 72663900 + 2 NA intron (NR_135774, intron 6 of 19) L1MC2|LINE|L1 162234 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 267-96 chr13 76085936 76086106 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -150889 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 377-73 chr11 90445255 90445593 + 2 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 110433 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 213-137 chr2 57245547 57245681 + 2 NA Intergenic L1MC1|LINE|L1 -662037 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 341-63 chr10 65218444 65218744 + 2 NA Intergenic Intergenic -294076 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 335-15 chr1 95638056 95638341 + 2 NA Intergenic L3|LINE|CR1 128082 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 238-329 chr6 99641756 99641930 + 2 NA Intergenic Intergenic 35069 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 358-359 chr5 13999109 13999408 + 2 NA Intergenic L1MB1|LINE|L1 -54778 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 252-213 chr2 134983982 134984194 + 2 NA intron (NM_001018047, intron 6 of 8) intron (NM_001018047, intron 6 of 8) 39561 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 324-276 chr2 115782847 115783114 + 2 NA intron (NM_001321912, intron 18 of 25) intron (NM_001321912, intron 18 of 25) 439165 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 205-242 chr6 69929128 69929318 + 2 NA intron (NM_001858, intron 5 of 50) intron (NM_001858, intron 5 of 50) 62667 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 191-124 chr20 42788012 42788162 + 2 NA intron (NM_133170, intron 3 of 31) intron (NM_133170, intron 3 of 31) 102604 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 490-258 chr7 27295076 27295378 + 2 NA Intergenic Intergenic -47998 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 159-45 chr2 137476289 137476419 + 2 NA intron (NM_001316349, intron 15 of 27) L1MA4A|LINE|L1 451578 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 209-176 chr20 59421814 59421998 + 2 NA Intergenic Intergenic 121295 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 359-372 chr4 100187631 100187937 + 2 NA exon (NM_145244, exon 3 of 3) exon (NM_145244, exon 3 of 3) -2249 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 549-69 chr15 96132825 96133268 + 2 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -5205 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 298-242 chr2 185418347 185418575 + 2 NA Intergenic Intergenic -251389 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 314-5 chr1 33589316 33589605 + 2 NA intron (NM_052896, intron 45 of 69) L1ME4b|LINE|L1 116815 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 216-10 chr1 82510705 82510861 + 2 NA Intergenic Intergenic -392400 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 310-379 chr4 125173765 125173968 + 2 NA Intergenic Intergenic -142546 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 314-306 chr2 143982541 143982698 + 2 NA intron (NM_001354353, intron 7 of 9) AluSz|SINE|Alu 45552 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 177-2 chr1 57267893 57268050 + 2 NA intron (NM_001353980, intron 5 of 5) intron (NM_001353980, intron 5 of 5) 155141 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 260-85 chr11 100336897 100337077 + 2 NA intron (NM_001243270, intron 20 of 23) intron (NM_001243270, intron 20 of 23) -350301 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 419-299 chr8 121029237 121029483 + 2 NA Intergenic MIRb|SINE|MIR -217314 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 383-79 chr12 40686594 40686913 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -5686 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 294-208 chr2 45692102 45692345 + 2 NA intron (NM_005400, intron 1 of 14) MLT1C|LTR|ERVL-MaLR 40548 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 492-143 chr2 175223878 175224250 + 2 NA Intergenic L1MB7|LINE|L1 -42354 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 362-469 chr9 126142316 126142523 + 2 NA Intergenic L1MEd|LINE|L1 133496 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 338-366 chr4 13796503 13796692 + 2 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 141418 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 355-215 chr18 75120812 75121026 + 2 NA Intergenic Intergenic 84594 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 278-272 chr3 61119858 61120128 + 2 NA intron (NR_148922, intron 2 of 3) MLT2B1|LTR|ERVL 131459 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 253-234 chr21 26729060 26729243 + 2 NA Intergenic L1PB3|LINE|L1 116258 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 250-420 chr8 60070161 60070365 + 2 NA Intergenic L1ME3Cz|LINE|L1 211137 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 461-138 chr2 114211141 114211428 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -231300 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 603-157 chr7 71553374 71553749 + 2 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -245791 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 482-242 chr7 32239605 32239902 + 2 NA intron (NM_001322059, intron 1 of 17) L1ME3C|LINE|L1 59575 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 362-87 chr11 37618642 37618983 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -319789 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 352-7 chr1 59575329 59575604 + 2 NA intron (NM_001350794, intron 8 of 14) L1MA7|LINE|L1 59836 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 130-40 chr2 82501119 82501188 + 2 NA Intergenic Intergenic -355650 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 240-338 chr4 178535729 178535901 + 2 NA Intergenic Intergenic -627879 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 258-326 chr5 84364658 84364858 + 2 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 20109 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 424-23 chr10 34087192 34087475 + 2 NA Intergenic MIR|SINE|MIR -314653 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 182-106 chr3 10903948 10904076 + 2 NA intron (NM_014229, intron 6 of 13) intron (NM_014229, intron 6 of 13) 87784 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 449-58 chr12 65396104 65396392 + 2 NA intron (NM_001031679, intron 5 of 6) L1MCa|LINE|L1 117261 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 381-399 chr8 139520713 139520973 + 2 NA Intergenic L1MA5A|LINE|L1 182280 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 557-133 chr3 50863408 50863933 + 2 NA intron (NM_004947, intron 3 of 52) L1PA17|LINE|L1 188590 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 338-377 chr4 46909403 46909601 + 2 NA promoter-TSS (NM_130902) promoter-TSS (NM_130902) -257 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 349-234 chr19 52458798 52459040 + 2 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 5366 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 464-188 chr4 106098019 106098358 + 2 NA intron (NM_001290768, intron 25 of 26) intron (NM_001290768, intron 25 of 26) -75710 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 213-249 chr6 25630175 25630341 + 2 NA Intergenic Intergenic -21957 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 175-64 chr17 73848717 73848860 + 2 NA Intergenic Intergenic -20251 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 324-445 chr5 169558450 169558673 + 2 NA Intergenic L1M5|LINE|L1 -25212 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 496-7 chr1 41165373 41165778 + 2 NA intron (NM_001172218, intron 2 of 15) L1MA6|LINE|L1 -2558 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 573-120 chr3 109084758 109085167 + 2 NA intron (NM_014429, intron 8 of 27) L1MA4|LINE|L1 -16494 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 373-30 chr1 182047006 182047234 + 2 NA Intergenic L1MEi|LINE|L1 14592 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 306-201 chr17 73577504 73577699 + 2 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 63918 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 142-26 chr15 49789148 49789236 + 2 NA Intergenic L1ME1|LINE|L1 168144 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 364-52 chr10 30265731 30265970 + 2 NA Intergenic L1MA3|LINE|L1 53998 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 317-193 chr17 77012357 77012522 + 2 NA Intergenic L1MEh|LINE|L1 -43240 NR_136416 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 417-278 chr8 68792903 68793215 + 2 NA intron (NR_146187, intron 12 of 13) L1MEd|LINE|L1 311131 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 280-331 chr5 115606219 115606408 + 2 NA intron (NR_109875, intron 2 of 2) L1M5|LINE|L1 -3834 NM_021649 353376 Hs.718838 NM_021649 ENSG00000243414 TICAM2 MyD88-4|TICAM-2|TIRAP3|TIRP|TRAM toll like receptor adaptor molecule 2 protein-coding 176-103 chr5 31642083 31642208 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 3014 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 297-6 chr1 48807376 48807644 + 2 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -30541 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 339-134 chr12 113776660 113776875 + 2 NA Intergenic MIRb|SINE|MIR -3084 NR_110025 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 293-9 chr1 95103586 95103843 + 2 NA intron (NM_001199679, intron 1 of 6) intron (NM_001199679, intron 1 of 6) 11197 NM_001199679 148534 Hs.483512 NM_152487 ENSG00000152078 TLCD4 TMEM56 TLC domain containing 4 protein-coding 282-20 chr1 191269495 191269759 + 2 NA Intergenic Intergenic -41129 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 354-192 chr19 37738494 37738724 + 2 NA exon (NM_001172689, exon 6 of 6) exon (NM_001172689, exon 6 of 6) -18848 NM_032689 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 427-64 chr13 74273059 74273319 + 2 NA Intergenic Intergenic 41745 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 273-366 chr5 123758718 123758881 + 2 NA Intergenic L1MA4|LINE|L1 213382 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 339-399 chr4 38968583 38968853 + 2 NA intron (NM_001303228, intron 6 of 6) intron (NM_001303228, intron 6 of 6) 63691 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 478-57 chr12 17545028 17545393 + 2 NA Intergenic L1MA4A|LINE|L1 43868 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 232-412 chrX 71084800 71085006 + 2 NA Intergenic AluJr|SINE|Alu -10948 NM_005938 4303 Hs.584654 NM_005938 ENSG00000184481 FOXO4 AFX|AFX1|MLLT7 forkhead box O4 protein-coding 296-126 chr13 106833992 106834156 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 180194 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 340-384 chr3 181606089 181606366 + 2 NA intron (NR_075091, intron 4 of 7) MIRb|SINE|MIR -4107 NR_075090 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 311-75 chr11 3198995 3199180 + 2 NA Intergenic L2|LINE|L2 -19245 NR_027138 283303 Hs.151154 NM_173590 ENSG00000236301 MRGPRG-AS1 C11orf36|HSD-40 MRGPRG antisense RNA 1 ncRNA 669-7 chr1 188051854 188052348 + 2 NA Intergenic L1MB7|LINE|L1 608473 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 249-116 chr14 46388978 46389171 + 2 NA intron (NR_102702, intron 3 of 3) L1MA6|LINE|L1 -82285 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 273-279 chr22 31017243 31017493 + 2 NA Intergenic AluJr4|SINE|Alu 48157 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 244-200 chr20 42776873 42777031 + 2 NA intron (NM_133170, intron 4 of 31) L2a|LINE|L2 91469 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 182-47 chr13 93567772 93567905 + 2 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 290635 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 357-186 chr2 21438732 21438996 + 2 NA Intergenic L1M5|LINE|L1 271788 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 510-85 chr15 25084386 25084724 + 2 NA promoter-TSS (NR_003333) promoter-TSS (NR_003333) -829 NR_003333 100033430 NR_003333 ENSG00000206688 SNORD116-18 HBII-85-18 small nucleolar RNA, C/D box 116-18 snoRNA 212-31 chr10 29109633 29109771 + 2 NA Intergenic Intergenic -179368 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 391 chr1 18686984 18687327 + 2 NA intron (NM_001135254, intron 4 of 8) AluSx|SINE|Alu 56309 NM_002584 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 479-165 chr4 74824429 74824778 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -30080 NM_001729 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 361-368 chr5 118052912 118053162 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -229537 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 322-30 chr1 168990654 168990878 + 2 NA intron (NR_104091, intron 3 of 4) L1MA9|LINE|L1 96239 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 251-5 chr1 71546322 71546510 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 290596 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 259-328 chr5 128921620 128921807 + 2 NA Intergenic Intergenic -43414 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 297-290 chr3 70722820 70723080 + 2 NA Intergenic Intergenic 341974 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 467-258 chr7 21141246 21141682 + 2 NA Intergenic Intergenic -286619 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 369-16 chr1 172632428 172632620 + 2 NA Intergenic Intergenic -26484 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 183-159 chr8 103350950 103351115 + 2 NA Intergenic Intergenic -20506 NM_138455 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 304-419 chr5 60325661 60325895 + 2 NA intron (NM_001364599, intron 1 of 16) L1MD1|LINE|L1 46885 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 232-56 chr11 38276135 38276314 + 2 NA Intergenic L1MEg|LINE|L1 337623 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 276-127 chr13 55142356 55142609 + 2 NA Intergenic MLT2B3|LTR|ERVL -31972 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 352-260 chr2 180391863 180392155 + 2 NA Intergenic L1MA2|LINE|L1 -300095 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 285-6 chr1 58828061 58828207 + 2 NA intron (NR_108106, intron 1 of 1) MER1B|DNA|hAT-Charlie 42983 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 264-103 chr13 23500945 23501162 + 2 NA Intergenic Intergenic 31541 NR_038995 100506697 Hs.50118 NR_038995 ENSG00000232977 LINC00327 NCRNA00327 long intergenic non-protein coding RNA 327 ncRNA 279-352 chr5 180771896 180772044 + 2 NA Intergenic L1MEf|LINE|L1 30836 NM_001364392 4245 Hs.519818 NM_002406 ENSG00000131446 MGAT1 GLCNAC-TI|GLCT1|GLYT1|GNT-1|GNT-I|GnTI|MGAT mannosyl (alpha-1,3-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase protein-coding 340-205 chr17 65814573 65814812 + 2 NA intron (NR_126542, intron 1 of 5) intron (NR_126542, intron 1 of 5) 11759 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 239-116 chr15 35035373 35035566 + 2 NA Intergenic Intergenic -47182 NM_014106 54989 Hs.744990 NM_014106 ENSG00000198146 ZNF770 PRO1914 zinc finger protein 770 protein-coding 234-162 chr2 43207968 43208138 + 2 NA Intergenic L2a|LINE|L2 18553 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 357-319 chr4 100804094 100804421 + 2 NA Intergenic Intergenic -129144 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 340-452 chr5 72545868 72546110 + 2 NA Intergenic L1MA4|LINE|L1 -11088 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 142-46 chr20 50835732 50835828 + 2 NA intron (NM_001010974, intron 3 of 3) Charlie8|DNA|hAT-Charlie 40886 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 293-209 chr2 155105093 155105247 + 2 NA Intergenic L1M1|LINE|L1 406475 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 369-60 chr11 61173003 61173212 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -11681 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 189-10 chr1 226532704 226532854 + 2 NA Intergenic Intergenic -15985 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 303-402 chr6 122427421 122427610 + 2 NA intron (NM_001135564, intron 10 of 11) intron (NM_001135564, intron 10 of 11) 27863 NM_004506 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 380-418 chr9 28701991 28702302 + 2 NA intron (NM_001354574, intron 2 of 5) L1MC1|LINE|L1 17159 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 286-181 chr19 53400498 53400765 + 2 NA intron (NM_001350495, intron 2 of 2) (ATACAC)n|Simple_repeat|Simple_repeat 5482 NM_001040185 91661 Hs.657821 NM_001040185 ENSG00000196417 ZNF765 - zinc finger protein 765 protein-coding 326-119 chr12 11426828 11427076 + 2 NA Intergenic Intergenic -31385 NM_006248 653247 Hs.654486 NM_006248 ENSG00000121335 PRB2 IB-9|PRPPRB1|Ps|cP7 proline rich protein BstNI subfamily 2 protein-coding 509-245 chr8 34361396 34361777 + 2 NA Intergenic L1M3f|LINE|L1 -422335 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 396-339 chr7 112104777 112105002 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 101510 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 214-110 chr15 91062781 91062938 + 2 NA Intergenic Intergenic -36729 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 542-72 chr16 52852060 52852485 + 2 NA Intergenic L1M2|LINE|L1 200601 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 347-136 chr14 62797149 62797409 + 2 NA intron (NM_139318, intron 9 of 10) intron (NM_139318, intron 9 of 10) 248179 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 401-129 chr17 65684963 65685189 + 2 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -123428 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 170-55 chr15 86834417 86834556 + 2 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -98394 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 312-548 chr9 85099214 85099495 + 2 NA Intergenic L1MEg|LINE|L1 393453 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 306-495 chr8 46480413 46480592 + 2 NA Intergenic ALR/Alpha|Satellite|centr 137141 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 413-293 chr8 30921617 30921888 + 2 NA Intergenic L1MB7|LINE|L1 -8744 NM_001350162 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 248-183 chr2 66170131 66170285 + 2 NA Intergenic Alu|SINE|Alu 188120 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 379-192 chr20 54705278 54705511 + 2 NA Intergenic Intergenic 229801 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 507-226 chr6 169134031 169134370 + 2 NA Intergenic L1MA2|LINE|L1 28101 NR_132622 101929484 Hs.364166 NR_132622 ENSG00000223485 LINC01615 - long intergenic non-protein coding RNA 1615 ncRNA 815-12 chr12 59826597 59827204 + 2 NA Intergenic Charlie6|DNA|hAT-Charlie 137530 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 332-349 chr3 132849324 132849518 + 2 NA intron (NR_002811, intron 9 of 10) L2c|LINE|L2 -126962 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 769-48 chr5 13320445 13320918 + 2 NA Intergenic L1MA5|LINE|L1 -287795 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 291-94 chr12 39017864 39018081 + 2 NA Intergenic Intergenic -112381 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 298-100 chr12 94037157 94037314 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -93629 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 281-135 chr15 48305369 48305575 + 2 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -25623 NM_001330286 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 395-81 chr13 58816832 58817073 + 2 NA Intergenic Intergenic -583835 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 252-204 chr2 103052578 103052796 + 2 NA Intergenic L1MA2|LINE|L1 -68258 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 441-29 chr10 81419872 81420221 + 2 NA Intergenic Intergenic -455148 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 335-582 chrX 76097506 76097833 + 2 NA Intergenic L1MB1|LINE|L1 -75260 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 644-8 chr10 46287666 46288200 + 2 NA intron (NM_001278688, intron 1 of 16) intron (NM_001278688, intron 1 of 16) 936 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000274209 ANTXRL - ANTXR like protein-coding 389-245 chr3 133719673 133719976 + 2 NA intron (NM_001354703, intron 7 of 22) L1M2|LINE|L1 -26569 NM_001354704 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 276-439 chr8 36067669 36067833 + 2 NA Intergenic Intergenic -357431 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 397-208 chr3 89222365 89222615 + 2 NA intron (NM_182644, intron 3 of 6) (AT)n|Simple_repeat|Simple_repeat 114869 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 264-45 chr10 54165618 54165808 + 2 NA intron (NM_001354411, intron 14 of 34) intron (NM_001354411, intron 14 of 34) -320517 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 318-63 chr10 57123563 57123735 + 2 NA Intergenic Intergenic 180910 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 482-99 chr17 62371727 62372074 + 2 NA intron (NM_001144933, intron 1 of 11) intron (NM_001144933, intron 1 of 11) 1682 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 312-373 chr4 62904583 62904805 + 2 NA Intergenic MIR|SINE|MIR -742929 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 392-110 chr17 9147407 9147739 + 2 NA intron (NM_004822, intron 2 of 6) intron (NM_004822, intron 2 of 6) 31545 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 245-187 chr2 40422680 40422906 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 7511 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 253-81 chr11 92724596 92724843 + 2 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 190909 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 342-133 chr13 88592272 88592498 + 2 NA Intergenic L1PA15-16|LINE|L1 -34468 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 150-109 chr8 122068014 122068130 + 2 NA Intergenic L1MA7|LINE|L1 -426632 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 443-140 chr2 9127951 9128350 + 2 NA Intergenic AluSx3|SINE|Alu -78615 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 338-218 chr17 71578106 71578394 + 2 NA Intergenic LTR8B|LTR|ERV1 -376071 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 244-377 chr8 118575089 118575260 + 2 NA intron (NM_001101676, intron 2 of 4) Tigger19a|DNA|TcMar-Tigger -45827 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 518-8 chr1 172259275 172259624 + 2 NA intron (NR_146559, intron 16 of 20) L1MA4A|LINE|L1 -114614 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 199-203 chr5 115243199 115243357 + 2 NA intron (NM_005023, intron 2 of 8) L1ME4c|LINE|L1 19599 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 535-145 chr2 206844188 206844566 + 2 NA Intergenic Intergenic -61069 NR_036077 100422993 NR_036077 ENSG00000283469 MIR3130-1 MIR3130-3|mir-3130-1 microRNA 3130-1 ncRNA 371-354 chr7 18487666 18487955 + 2 NA intron (NM_001204144, intron 3 of 12) intron (NM_001204144, intron 3 of 12) -7900 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 479-109 chr2 124928024 124928493 + 2 NA Intergenic LTR12|LTR|ERV1 902971 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 310-452 chr6 78341297 78341565 + 2 NA Intergenic AluJb|SINE|Alu 197878 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 343-181 chr16 54849936 54850124 + 2 NA Intergenic Intergenic -1797 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 298-155 chr16 65446205 65446494 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 129951 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 372-107 chr12 29100169 29100508 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -48940 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 136-60 chr3 76856926 76857029 + 2 NA Intergenic Intergenic -183122 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 389-224 chr3 62795807 62796099 + 2 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 79463 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 236-358 chr8 106945223 106945437 + 2 NA Intergenic Intergenic -175086 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 532-254 chr7 113803418 113803815 + 2 NA Intergenic HERVL40-int|LTR|ERVL 115393 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 489-43 chr11 78994729 78994975 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 407257 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 264-79 chr11 105373152 105373295 + 2 NA Intergenic Intergenic -233454 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 120-12 chr12 21718494 21718591 + 2 NA Intergenic Intergenic 56164 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 220-74 chr11 114711888 114712017 + 2 NA Intergenic L1MB2|LINE|L1 33425 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 550-21 chr10 18936312 18936680 + 2 NA Intergenic L1PA7|LINE|L1 -112305 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 200-18 chr1 194934348 194934516 + 2 NA Intergenic L1PA16|LINE|L1 1154283 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 341-333 chr3 66789103 66789295 + 2 NA Intergenic L1ME4a|LINE|L1 -50863 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 152-29 chr15 65319775 65319866 + 2 NA Intergenic L1MB8|LINE|L1 15143 NR_002757 26832 NR_002757 ENSG00000200156 RNU5B-1 RNU5B|RNU5B-1P|U5B1 RNA, U5B small nuclear 1 snRNA 256-185 chr2 900050 900219 + 2 NA TTS (NR_110179) TTS (NR_110179) 5317 NR_110179 101060385 Hs.385965 NR_110179 ENSG00000228799 LINC01939 - long intergenic non-protein coding RNA 1939 ncRNA 503-205 chr3 161391627 161391994 + 2 NA Intergenic MIR|SINE|MIR -18860 NM_001320679 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 238-71 chr11 72582034 72582246 + 2 NA intron (NM_001143839, intron 20 of 29) intron (NM_001143839, intron 20 of 29) 11484 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 199-248 chr8 129135690 129135846 + 2 NA Intergenic MIRb|SINE|MIR 105472 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 508-86 chr18 72476007 72476471 + 2 NA Intergenic AluSx|SINE|Alu 68103 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 312-56 chr10 91642841 91643112 + 2 NA Intergenic Intergenic -9905 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 456-82 chr13 96845361 96845653 + 2 NA Intergenic Intergenic 138665 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 632-14 chr11 43725560 43726190 + 2 NA intron (NM_016142, intron 1 of 10) intron (NM_016142, intron 1 of 10) 45137 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 657-24 chr12 113767087 113767607 + 2 NA intron (NR_110026, intron 1 of 2) MIR|SINE|MIR 6336 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 445-161 chr21 37745141 37745545 + 2 NA intron (NM_002240, intron 2 of 3) AluJb|SINE|Alu 171114 NM_002240 3763 Hs.626242 NM_002240 ENSG00000157542 KCNJ6 BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2 potassium voltage-gated channel subfamily J member 6 protein-coding 415-211 chr5 25821562 25821822 + 2 NA Intergenic Intergenic 630739 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 327-341 chr3 134670757 134670987 + 2 NA Intergenic L1ME3Cz|LINE|L1 -19850 NM_178554 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 263-8 chr1 73702293 73702483 + 2 NA intron (NR_146300, intron 2 of 3) intron (NR_146300, intron 2 of 3) 27709 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 781-52 chr5 117335152 117335843 + 2 NA Intergenic Intergenic -80015 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 313-218 chr19 16060240 16060396 + 2 NA Intergenic Intergenic -5369 NR_146442 105372292 Hs.635664 NR_146442 ENSG00000267517 LINC01855 - long intergenic non-protein coding RNA 1855 ncRNA 190-111 chr22 35099664 35099820 + 2 NA Intergenic MIR3|SINE|MIR 33584 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 552-159 chr4 122607156 122607539 + 2 NA Intergenic L1PA8A|LINE|L1 -11636 NR_104126 100996941 Hs.439487 NR_104126 ENSG00000227145 IL21-AS1 - IL21 antisense RNA 1 ncRNA 312-307 chr21 33369665 33369843 + 2 NA Intergenic LTR16A|LTR|ERVL -33142 NM_005534 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 653-77 chr20 42173775 42174352 + 2 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -511420 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 277-66 chr11 14150992 14151160 + 2 NA intron (NM_006108, intron 6 of 15) L3|LINE|CR1 188353 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 401-304 chr7 102950305 102950525 + 2 NA intron (NR_105043, intron 9 of 20) L1MC1|LINE|L1 -23015 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 217-322 chr6 49122090 49122245 + 2 NA Intergenic Intergenic 341086 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 377-106 chr13 69567651 69567945 + 2 NA Intergenic MER102b|DNA|hAT-Charlie 345452 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 300-234 chr20 15856261 15856459 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 66954 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 320-392 chr4 72480700 72480973 + 2 NA intron (NM_014243, intron 3 of 21) L1MD1|LINE|L1 88385 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 228-250 chr4 95717092 95717267 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -122914 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 607-19 chr10 20080524 20080921 + 2 NA intron (NM_032812, intron 4 of 13) MLT2A2|LTR|ERVL 264290 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 416-245 chr4 39415357 39415681 + 2 NA intron (NM_175737, intron 1 of 4) intron (NM_175737, intron 1 of 4) 3609 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 229-87 chr12 19538133 19538299 + 2 NA Intergenic Intergenic 97617 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 230-44 chr10 66853522 66853698 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -72426 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 454-312 chr8 88378615 88378960 + 2 NA Intergenic Intergenic -51304 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 295-70 chr11 45616660 45616836 + 2 NA Intergenic AluSz6|SINE|Alu 48874 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 544-107 chr2 11928779 11929161 + 2 NA Intergenic MIRb|SINE|MIR -78146 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 178-8 chr1 102086966 102087114 + 2 NA Intergenic HERVI-int|LTR|ERV1 -89806 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 576-167 chr8 96062674 96063159 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 97890 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 187-121 chr3 176752818 176752937 + 2 NA Intergenic Intergenic 64124 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 289-454 chr8 5890141 5890387 + 2 NA Intergenic Intergenic 516284 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 339-46 chr1 239674793 239675024 + 2 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 44211 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 289-493 chr9 105226390 105226642 + 2 NA Intergenic MIR3|SINE|MIR -18089 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 388-110 chr14 62212540 62212831 + 2 NA Intergenic Intergenic -72712 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 331-151 chr14 46395123 46395374 + 2 NA intron (NR_102702, intron 3 of 3) AluJo|SINE|Alu -76111 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 323-244 chr2 55963172 55963434 + 2 NA TTS (NR_126406) TTS (NR_126406) 19773 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 117-27 chr3 108070048 108070135 + 2 NA intron (NM_198793, intron 3 of 8) MamRTE1|LINE|RTE-BovB 20997 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 257-454 chrX 81165264 81165481 + 2 NA intron (NM_030763, intron 1 of 6) intron (NM_030763, intron 1 of 6) 36541 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 251-423 chr9 102793969 102794209 + 2 NA Intergenic L1MEc|LINE|L1 -201244 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 312-345 chr3 131114340 131114526 + 2 NA intron (NM_001353036, intron 5 of 14) MLT1I|LTR|ERVL-MaLR 86705 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 224-344 chr9 7367754 7367884 + 2 NA Intergenic L1MA7|LINE|L1 431959 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 124-20 chr13 25331152 25331255 + 2 NA intron (NM_014089, intron 12 of 15) intron (NM_014089, intron 12 of 15) 29578 NM_014089 9818 Hs.507537 NM_014089 ENSG00000139496 NUP58 NUP45|NUPL1|PRO2463 nucleoporin 58 protein-coding 289-238 chr2 114880052 114880289 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -46622 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 461-123 chr2 31702517 31702814 + 2 NA Intergenic L1M3b|LINE|L1 101315 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 391-205 chr20 40139655 40140005 + 2 NA Intergenic L1ME3F|LINE|L1 135369 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 627-3 chr1 164127290 164127723 + 2 NA Intergenic L1M7|LINE|L1 -431854 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 319-592 chrX 149409736 149409916 + 2 NA Intergenic L1MB8|LINE|L1 95480 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 229-184 chr2 78049501 78049665 + 2 NA intron (NR_110288, intron 1 of 3) L1PA14|LINE|L1 -39147 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 276-68 chr10 104861318 104861582 + 2 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -195234 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 423-46 chr11 42746157 42746431 + 2 NA Intergenic Intergenic -492604 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 213-86 chr14 47929292 47929458 + 2 NA Intergenic Intergenic -134361 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 338-232 chr18 72814830 72815097 + 2 NA intron (NM_001354018, intron 4 of 11) intron (NM_001354018, intron 4 of 11) 38419 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 370-414 chr7 37720092 37720396 + 2 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 36478 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 207-213 chr4 46223470 46223612 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -99487 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 138-73 chr5 162642330 162642443 + 2 NA Intergenic AluJo|SINE|Alu 574744 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 150-93 chr5 178953804 178953922 + 2 NA intron (NM_001178089, intron 4 of 4) HAL1|LINE|L1 12665 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 211-121 chr18 37587949 37588133 + 2 NA Intergenic Intergenic -22243 NM_001353722 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 340-454 chr5 79011619 79011825 + 2 NA intron (NM_013391, intron 14 of 15) MSTA|LTR|ERVL-MaLR -25764 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 474-247 chr5 166957017 166957479 + 2 NA Intergenic L2a|LINE|L2 -30878 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 393-83 chr13 71795922 71796201 + 2 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 71131 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 260-358 chr5 136979994 136980136 + 2 NA intron (NM_004598, intron 9 of 10) intron (NM_004598, intron 9 of 10) -148132 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 323-124 chr12 130293583 130293807 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -44192 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 518-87 chr15 27195553 27196003 + 2 NA intron (NM_001270873, intron 3 of 5) AluSx1|SINE|Alu -34459 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 225-308 chr6 49243801 49243972 + 2 NA Intergenic Intergenic 219367 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 301-25 chr1 208969004 208969188 + 2 NA Intergenic Intergenic -3358 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 282-480 chr9 29309185 29309395 + 2 NA Intergenic Intergenic -95689 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 403-273 chr6 113270006 113270341 + 2 NA Intergenic MER30|DNA|hAT-Charlie 163274 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 184-130 chr4 162510050 162510165 + 2 NA Intergenic L2b|LINE|L2 -346073 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 199-231 chr8 25106883 25107073 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -77711 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 262-205 chr2 82910889 82911069 + 2 NA Intergenic Intergenic 54176 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 298-152 chr16 49138962 49139148 + 2 NA Intergenic Intergenic 142783 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 263-290 chr4 67674676 67674866 + 2 NA intron (NM_018227, intron 6 of 32) L1MEd|LINE|L1 26384 NM_018227 55236 Hs.212774 NM_018227 ENSG00000033178 UBA6 E1-L2|MOP-4|UBE1L2 ubiquitin like modifier activating enzyme 6 protein-coding 310-206 chr18 74052341 74052522 + 2 NA Intergenic Intergenic 95403 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 125-54 chr5 39837669 39837766 + 2 NA Intergenic L1M7|LINE|L1 -214574 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 595-25 chr11 13952832 13953263 + 2 NA Intergenic Intergenic -9676 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 248-171 chr2 14567636 14567800 + 2 NA Intergenic L2c|LINE|L2 -64999 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 559-136 chr4 61445531 61445852 + 2 NA intron (NM_001371343, intron 2 of 23) L2b|LINE|L2 243519 NM_001371342 365-18 chr1 111484605 111484881 + 2 NA intron (NM_001081976, intron 5 of 5) intron (NM_001081976, intron 5 of 5) 10759 NM_001300834 128346 Hs.288010 NM_174896 ENSG00000143110 C1orf162 - chromosome 1 open reading frame 162 protein-coding 367-389 chr6 49200055 49200289 + 2 NA Intergenic Intergenic 263081 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 810-55 chr8 88347291 88347886 + 2 NA Intergenic L1PA11|LINE|L1 -20105 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 314-61 chr10 29018316 29018571 + 2 NA Intergenic L1MA6|LINE|L1 172035 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 212-77 chr12 11948911 11949069 + 2 NA Intergenic L2a|LINE|L2 -100871 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 380-152 chr17 60873288 60873666 + 2 NA intron (NM_001330413, intron 8 of 25) intron (NM_001330413, intron 8 of 25) 195626 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 196-216 chr5 155063069 155063236 + 2 NA Intergenic L1ME4a|LINE|L1 49397 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 473-79 chr14 39593187 39593492 + 2 NA Intergenic L2a|LINE|L2 -160839 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 361-340 chr4 177658208 177658393 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -70457 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 349-526 chrX 54684527 54684774 + 2 NA Intergenic L1MC2|LINE|L1 113605 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 275-55 chr11 7208670 7208893 + 2 NA Intergenic L1MC4|LINE|L1 -25985 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 384-162 chr2 37130354 37130652 + 2 NA intron (NM_002759, intron 10 of 16) HERVFH19-int|LTR|ERV1 17319 NM_001135652 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 506-35 chr10 43514950 43515330 + 2 NA Intergenic HERVL-int|LTR|ERVL 53319 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 275-325 chr7 32532611 32532830 + 2 NA intron (NM_015060, intron 1 of 15) intron (NM_015060, intron 1 of 15) 37231 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 456-144 chr19 51816716 51817103 + 2 NA intron (NR_163433, intron 9 of 11) MER21C|LTR|ERVL 21752 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 199-172 chr3 189430631 189430783 + 2 NA Intergenic L1PBa|LINE|L1 -166039 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 336-348 chr22 24943716 24943885 + 2 NA intron (NM_001001663, intron 1 of 3) intron (NM_001001663, intron 1 of 3) 2895 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 369-33 chr10 29623328 29623681 + 2 NA intron (NM_001323599, intron 3 of 38) intron (NM_001323599, intron 3 of 38) 11467 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 252-271 chr3 105349543 105349699 + 2 NA Intergenic L1ME3D|LINE|L1 -17092 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 660-63 chr3 30081242 30081751 + 2 NA Intergenic L1MA9|LINE|L1 -147340 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 353-31 chr1 181868630 181868948 + 2 NA Intergenic MIRc|SINE|MIR 192923 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 457-45 chr12 21686021 21686427 + 2 NA Intergenic L1MC5|LINE|L1 -28369 NM_002300 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 585-72 chr2 79833411 79833800 + 2 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 32978 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 316-603 chrX 69671921 69672089 + 2 NA intron (NM_001005613, intron 2 of 2) L2c|LINE|L2 55892 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 320-231 chr18 77241817 77241993 + 2 NA Intergenic Intergenic -7943 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 488-160 chr20 55323866 55324184 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -99018 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 663-19 chr11 55040216 55040659 + 2 NA Intergenic ALR/Alpha|Satellite|centr -221718 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 634-13 chr10 9642547 9643018 + 2 NA Intergenic L1MCc|LINE|L1 -347189 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 421-305 chr8 106631534 106631892 + 2 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) -26095 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 373-138 chr15 100416482 100416707 + 2 NA intron (NR_120374, intron 3 of 4) THE1D|LTR|ERVL-MaLR 43655 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 328-531 chr7 42249499 42249752 + 2 NA Intergenic MIR|SINE|MIR -12416 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 211-304 chr8 106157871 106158037 + 2 NA Intergenic L1ME4a|LINE|L1 -97451 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 265-43 chr10 96207441 96207680 + 2 NA intron (NM_013314, intron 10 of 16) intron (NM_013314, intron 10 of 16) 63956 NM_001258440 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 532-283 chr9 29295626 29296011 + 2 NA Intergenic Intergenic -82217 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 492-115 chr18 66886387 66886813 + 2 NA Intergenic MER4B|LTR|ERV1 -194984 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 315-479 chr8 84347985 84348163 + 2 NA intron (NM_001354319, intron 2 of 8) MER57C2|LTR|ERV1 -67410 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 286-140 chr15 94710934 94711171 + 2 NA Intergenic LTR54|LTR|ERV1 -144311 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 290-48 chr10 47081901 47082131 + 2 NA Intergenic Intergenic 170294 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 349-503 chr8 88418165 88418458 + 2 NA Intergenic AluSx|SINE|Alu -90828 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 487-120 chr18 75541515 75541945 + 2 NA Intergenic L1MD2|LINE|L1 -114027 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 205-47 chr11 1312419 1312589 + 2 NA Intergenic L1MEg|LINE|L1 2796 NR_029409 255512 Hs.588291 NR_029409 ENSG00000255153 TOLLIP-AS1 - TOLLIP antisense RNA 1 (head to head) ncRNA 238-22 chr1 182737335 182737489 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 24550 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 419-64 chr12 28959808 28960048 + 2 NA Intergenic Intergenic -189350 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 172-26 chr12 858025 858159 + 2 NA intron (NM_001184985, intron 5 of 27) intron (NM_001184985, intron 5 of 27) 74984 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 630-40 chr17 68719081 68719671 + 2 NA Intergenic Intergenic 91222 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 310-359 chr4 30495621 30495922 + 2 NA Intergenic Intergenic -224598 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 361-20 chr1 166277640 166277952 + 2 NA Intergenic L1PREC2|LINE|L1 -111041 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 322-441 chr5 144813348 144813584 + 2 NA Intergenic Intergenic 608075 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 346-23 chr1 160756688 160756982 + 2 NA Intergenic L2b|LINE|L2 17588 NM_021181 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 240-386 chr6 133229723 133229876 + 2 NA Intergenic Intergenic -11558 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 333-463 chr5 96577001 96577315 + 2 NA intron (NR_130776, intron 4 of 4) L1MDb|LINE|L1 -84879 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 648-105 chr4 135937276 135937727 + 2 NA Intergenic Intergenic -23821 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 304-202 chr17 73854176 73854399 + 2 NA Intergenic Intergenic -25750 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 303-464 chr8 117048888 117049092 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -86005 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 340-357 chr3 28708835 28709115 + 2 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 133697 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 197-4 chr1 36724575 36724735 + 2 NA Intergenic Intergenic -241341 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 455-122 chr2 54811650 54812014 + 2 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 86820 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 140-34 chr19 9469928 9470061 + 2 NA intron (NM_152476, intron 7 of 9) intron (NM_152476, intron 7 of 9) 28622 NM_152476 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 368-248 chr2 154564687 154564984 + 2 NA Intergenic L1MA4|LINE|L1 -107397 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 253-303 chr4 113543161 113543368 + 2 NA intron (NM_001321578, intron 5 of 17) intron (NM_001321578, intron 5 of 17) 218474 NM_001321572 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 565-98 chr20 34972563 34972988 + 2 NA intron (NM_020884, intron 2 of 44) AluJr|SINE|Alu -16748 NM_001322494 2937 Hs.82327 NM_000178 ENSG00000100983 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 309-370 chr3 166582910 166583084 + 2 NA Intergenic L1PA16|LINE|L1 -315686 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 356-311 chr3 4186436 4186668 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger -116752 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 493-158 chr2 107477575 107477913 + 2 NA Intergenic L1M4|LINE|L1 -51675 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 541-205 chr6 122739567 122739936 + 2 NA Intergenic Intergenic -9450 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 284-90 chr12 66584586 66584839 + 2 NA intron (NM_001366722, intron 2 of 24) intron (NM_001366722, intron 2 of 24) 94364 NM_001178074 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 493-291 chr8 24357537 24358000 + 2 NA non-coding (NR_130710, exon 23 of 23) non-coding (NR_130710, exon 23 of 23) -26517 NM_001145271 27299 Hs.521459 NM_014479 ENSG00000134028 ADAMDEC1 M12.219 ADAM like decysin 1 protein-coding 310-404 chr5 68342701 68342990 + 2 NA Intergenic Intergenic 50268 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 316-123 chr12 23444021 23444310 + 2 NA Intergenic L1M4|LINE|L1 140421 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 670-103 chr6 73363469 73364095 + 2 NA exon (NM_001017361, exon 3 of 3) exon (NM_001017361, exon 3 of 3) 1124 NM_001017361 154288 Hs.128326 NM_001017361 ENSG00000203908 KHDC3L C6orf221|ECAT1|HYDM2 KH domain containing 3 like, subcortical maternal complex member protein-coding 465-105 chr17 71847326 71847612 + 2 NA Intergenic Intergenic 178510 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 487-223 chr5 11211795 11212113 + 2 NA intron (NM_001288715, intron 9 of 20) intron (NM_001288715, intron 9 of 20) 376963 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 191-106 chr2 133258770 133258947 + 2 NA intron (NM_207481, intron 4 of 17) MER103C|DNA|hAT-Charlie -7337 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 456-247 chr5 39466749 39467020 + 2 NA Intergenic Intergenic -41651 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 239-278 chr4 55597079 55597258 + 2 NA intron (NR_120489, intron 8 of 8) L1M5|LINE|L1 -4923 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 264-372 chr6 142966376 142966564 + 2 NA TTS (NR_038987) TTS (NR_038987) -21294 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 324-488 chr7 35817034 35817231 + 2 NA intron (NM_001788, intron 1 of 12) L1MB7|LINE|L1 15913 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 299-131 chr14 52991461 52991752 + 2 NA Intergenic L1MA3|LINE|L1 -40509 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 701-25 chr14 67954722 67955248 + 2 NA intron (NM_133509, intron 7 of 10) L2b|LINE|L2 131393 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 346-271 chr2 192958309 192958572 + 2 NA Intergenic LTR12|LTR|ERV1 208595 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 310-67 chr10 129362781 129363002 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -104350 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 368-115 chr12 105583938 105584128 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -120170 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 296-174 chr16 63343774 63344022 + 2 NA Intergenic Intergenic -1307460 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 193-186 chr7 45325696 45325852 + 2 NA Intergenic L1MDa|LINE|L1 167983 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 329-157 chr14 48038286 48038483 + 2 NA Intergenic L1M2|LINE|L1 -243370 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 176-153 chr9 75871062 75871199 + 2 NA Intergenic Intergenic -19514 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 302-168 chr17 52903482 52903742 + 2 NA Intergenic Intergenic 41491 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 158-11 chr10 13565920 13566033 + 2 NA Intergenic Intergenic -20989 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 244-277 chr4 115941699 115941875 + 2 NA Intergenic Intergenic -357938 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 321-173 chr14 66443588 66443880 + 2 NA Intergenic Intergenic -42637 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 363-377 chr5 157090985 157091278 + 2 NA intron (NM_032782, intron 5 of 6) L2b|LINE|L2 17913 NM_032782 84868 Hs.710500 NM_032782 ENSG00000135077 HAVCR2 CD366|HAVcr-2|KIM-3|SPTCL|TIM3|TIMD-3|TIMD3|Tim-3 hepatitis A virus cellular receptor 2 protein-coding 291-183 chr18 4070606 4070850 + 2 NA intron (NM_001242761, intron 2 of 11) L1M5|LINE|L1 108375 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 344-230 chr2 36058353 36058568 + 2 NA Intergenic Intergenic 297110 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 266-90 chr12 64295659 64295893 + 2 NA intron (NM_001099676, intron 4 of 10) intron (NM_001099676, intron 4 of 10) -73480 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 358-151 chr16 72910382 72910697 + 2 NA intron (NM_001164766, intron 2 of 8) MIRc|SINE|MIR 137589 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 175-91 chr2 227816990 227817116 + 2 NA intron (NM_004591, intron 3 of 3) intron (NM_004591, intron 3 of 3) 3211 NM_004591 6364 Hs.75498 NM_004591 ENSG00000115009 CCL20 CKb4|Exodus|LARC|MIP-3-alpha|MIP-3a|MIP3A|SCYA20|ST38 C-C motif chemokine ligand 20 protein-coding 166-121 chr9 35145089 35145246 + 2 NA Intergenic LTR25-int|LTR|ERV1 -16842 NM_001371189 295-281 chr3 2360965 2361200 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 122253 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 604-99 chr20 60584771 60585197 + 2 NA Intergenic Intergenic 20422 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 325-412 chr4 138620268 138620541 + 2 NA Intergenic L1MEc|LINE|L1 310693 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 219-214 chr21 21589345 21589484 + 2 NA Intergenic L1MB8|LINE|L1 147905 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 373-357 chr6 62524835 62525064 + 2 NA Intergenic Intergenic -238722 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 202-262 chr8 133108372 133108503 + 2 NA intron (NM_003235, intron 43 of 47) intron (NM_003235, intron 43 of 47) -5835 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 477-265 chr7 119671112 119671488 + 2 NA intron (NR_131960, intron 4 of 4) intron (NR_131960, intron 4 of 4) 236075 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 281-173 chr18 13495372 13495640 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) 35559 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 227-253 chr4 60910514 60910674 + 2 NA Intergenic Intergenic -12025 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 298-352 chr5 7550180 7550373 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 154138 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 132-43 chr2 154121364 154121465 + 2 NA intron (NM_052917, intron 3 of 12) L1MC|LINE|L1 177020 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 379-373 chr9 20153647 20153864 + 2 NA Intergenic L1ME4a|LINE|L1 257483 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 409-8 chr1 177615123 177615425 + 2 NA Intergenic L1MA6|LINE|L1 -85250 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 204-225 chr4 168091309 168091489 + 2 NA Intergenic Intergenic -1138 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 499-167 chr3 63033888 63034284 + 2 NA Intergenic Intergenic -68602 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 316-566 chr8 128133547 128133773 + 2 NA Intergenic Intergenic -16456 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 273-185 chr18 13229047 13229289 + 2 NA intron (NM_181482, intron 1 of 5) intron (NM_181482, intron 1 of 5) -10375 NR_146617 147276 Hs.675872 NR_146617 ENSG00000279020 C18orf15 HsT3231 chromosome 18 open reading frame 15 (putative) ncRNA 200-232 chr6 35391137 35391287 + 2 NA intron (NM_001171819, intron 2 of 6) (TTAATAT)n|Simple_repeat|Simple_repeat 48654 NM_001171819 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 299-36 chr1 240592559 240592808 + 2 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 19472 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 167-10 chr1 152467994 152468102 + 2 NA Intergenic Intergenic -42755 NM_178438 254910 Hs.516410 NM_178438 ENSG00000186207 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 518-90 chr15 71122346 71122809 + 2 NA Intergenic Intergenic -18872 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 555-36 chr11 112442059 112442379 + 2 NA Intergenic LTR86A1|LTR|ERVL -40013 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 455-198 chr4 164693818 164694173 + 2 NA Intergenic Intergenic -60136 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 253-144 chr15 92027128 92027335 + 2 NA intron (NR_135775, intron 2 of 10) L3|LINE|CR1 172927 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 243-166 chr17 57721278 57721482 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 23919 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 569-136 chr4 101595821 101596224 + 2 NA Intergenic Intergenic -194585 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 372-437 chr6 92257250 92257522 + 2 NA Intergenic AluSg|SINE|Alu -566958 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 244-50 chr11 44462278 44462464 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -103292 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 132-33 chr16 82707017 82707089 + 2 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) 18122 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 343-6 chr1 40355432 40355664 + 2 NA Intergenic L1MA3|LINE|L1 -18179 NM_022733 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 265-291 chr5 5704118 5704358 + 2 NA Intergenic Intergenic 281561 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 712-83 chr6 40205382 40205884 + 2 NA Intergenic L1MA9|LINE|L1 150373 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 378-382 chr6 128637036 128637374 + 2 NA Intergenic L2c|LINE|L2 -116606 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 234-407 chrX 77242790 77242984 + 2 NA Intergenic L1M3|LINE|L1 -204502 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 418-184 chr4 79416793 79417135 + 2 NA Intergenic Intergenic -8736 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 380-384 chr8 46225142 46225438 + 2 NA Intergenic GSAT|Satellite|centr 392353 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 440-123 chr2 104586368 104586710 + 2 NA Intergenic L1M6|LINE|L1 -76030 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 340-564 chr9 19721132 19721433 + 2 NA intron (NM_020344, intron 1 of 9) intron (NM_020344, intron 1 of 9) 65737 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 407-55 chr11 89544333 89544634 + 2 NA intron (NM_001143837, intron 2 of 20) intron (NM_001143837, intron 2 of 20) 45074 NM_001143837 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 710-29 chr14 37454398 37454963 + 2 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 140569 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 553-193 chr5 106836999 106837419 + 2 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 173805 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 240-355 chr5 99895035 99895237 + 2 NA Intergenic Intergenic 361146 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 747 chr1 19539797 19540389 + 2 NA Intergenic AluSp|SINE|Alu -54554 NM_004930 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 281-131 chr15 27683881 27684091 + 2 NA Intergenic Intergenic 415329 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 233-24 chr1 227697892 227698099 + 2 NA promoter-TSS (NR_036753) promoter-TSS (NR_036753) -288 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 322-130 chr12 69493962 69494270 + 2 NA intron (NM_001278354, intron 2 of 9) intron (NM_001278354, intron 2 of 9) -21324 NR_145803 109623461 NR_145803 SNORA113 - small nucleolar RNA, H/ACA box 113 snoRNA 213-273 chr8 57816145 57816317 + 2 NA Intergenic L1M5|LINE|L1 70082 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 409-280 chr7 39217580 39217900 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 111394 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 329-101 chr11 94257930 94258120 + 2 NA Intergenic L1MA6|LINE|L1 -47612 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 364-113 chr12 124705904 124706094 + 2 NA Intergenic Intergenic 133672 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 207-220 chr4 72771389 72771555 + 2 NA Intergenic L2a|LINE|L2 -202251 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 193-53 chr14 20749039 20749197 + 2 NA TTS (NM_006683) TTS (NM_006683) 3231 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 424-263 chr7 85783478 85783725 + 2 NA Intergenic L1MA8|LINE|L1 362479 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 988-10 chr16 5700039 5700678 + 2 NA Intergenic L1ME3C|LINE|L1 67891 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 792-19 chr13 32900102 32900806 + 2 NA intron (NR_047020, intron 3 of 4) MLT1D|LTR|ERVL-MaLR 11198 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 210-125 chr2 52992154 52992322 + 2 NA Intergenic Intergenic -289623 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 288-469 chr9 28181189 28181369 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 538026 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 334-9 chr1 56260475 56260765 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -154343 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 118-50 chr6 136801562 136801674 + 2 NA Intergenic L1M4|LINE|L1 -9141 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 173-100 chr4 32691193 32691346 + 2 NA Intergenic Intergenic 340231 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 537-73 chr14 94503898 94504303 + 2 NA 5' UTR (NM_001304461, exon 1 of 5) 5' UTR (NM_001304461, exon 1 of 5) 122 NM_001304461 145264 Hs.99476 NM_173850 ENSG00000165953 SERPINA12 OL-64 serpin family A member 12 protein-coding 212-192 chr21 19210769 19210932 + 2 NA Intergenic Intergenic -451038 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 331-240 chr19 58073321 58073604 + 2 NA Intergenic AluJo|SINE|Alu 14180 NM_003436 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 128-21 chr15 87882951 87883048 + 2 NA intron (NM_002530, intron 17 of 18) L1MEi|LINE|L1 63269 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 689-51 chr2 136178932 136179567 + 2 NA Intergenic Intergenic -61094 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 337-31 chr1 204174941 204175153 + 2 NA Intergenic L2b|LINE|L2 -8710 NM_000537 5972 Hs.3210 NM_000537 ENSG00000143839 REN HNFJ2 renin protein-coding 241-170 chr2 117669 117858 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -71258 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 335-261 chr2 126157268 126157480 + 2 NA Intergenic L1MC1|LINE|L1 -39389 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 299-75 chr11 29103930 29104123 + 2 NA Intergenic L2a|LINE|L2 -490387 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 279-75 chr12 8784942 8785120 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -37590 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 1016-9 chr2 82917667 82918557 + 2 NA Intergenic Intergenic 61309 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 278-285 chr3 112157079 112157326 + 2 NA intron (NM_001320531, intron 25 of 27).2 L1MA4|LINE|L1 23779 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 445-87 chr16 36059743 36060073 + 2 NA Intergenic ALR/Alpha|Satellite|centr 313356 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 370-299 chr3 261173 261423 + 2 NA intron (NM_001253387, intron 2 of 26) GA-rich|Low_complexity|Low_complexity -58385 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 113-16 chr14 26517288 26517352 + 2 NA intron (NM_001366393, intron 2 of 4) intron (NM_001366393, intron 2 of 4) 36110 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 307-483 chr8 82498788 82499005 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -413208 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 282-121 chr14 38249542 38249788 + 2 NA Intergenic L1M4|LINE|L1 6428 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 306-89 chr11 105936241 105936400 + 2 NA intron (NM_000829, intron 14 of 16) intron (NM_000829, intron 14 of 16) 85920 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 575-68 chr17 51868435 51868816 + 2 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 290089 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 287-185 chr2 14950899 14951145 + 2 NA Intergenic Intergenic 318305 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 259-312 chr5 50269065 50269285 + 2 NA Intergenic L1MCb|LINE|L1 172113 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 307-10 chr1 83600982 83601217 + 2 NA intron (NR_119375, intron 2 of 2) L1MA9|LINE|L1 155045 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 282-213 chr2 86438296 86438464 + 2 NA Intergenic L1MA8|LINE|L1 -2991 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 310-245 chr2 88275053 88275351 + 2 NA Intergenic Intergenic 102063 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 112-26 chr2 236957761 236957817 + 2 NA Intergenic L1M5|LINE|L1 98378 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 379-188 chr20 39115881 39116205 + 2 NA Intergenic Intergenic 108705 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 136-38 chr16 82966604 82966679 + 2 NA intron (NR_110937, intron 1 of 2) L1MC4|LINE|L1 23657 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 589-12 chr10 80843685 80844166 + 2 NA Intergenic LTR49-int|LTR|ERV1 194128 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 454-169 chr2 123605363 123605660 + 2 NA Intergenic Intergenic 419663 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 409-85 chr14 88964215 88964428 + 2 NA Intergenic MLT1K-int|LTR|ERVL-MaLR 139670 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 231-354 chr8 89436012 89436212 + 2 NA Intergenic Intergenic 321599 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 186-157 chr8 49522658 49522787 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -10542 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 273-145 chr15 58475073 58475255 + 2 NA intron (NR_120338, intron 2 of 2) L2c|LINE|L2 23571 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 204-148 chr2 96451156 96451355 + 2 NA Intergenic Intergenic 54102 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 618-56 chr2 39559496 39559888 + 2 NA intron (NR_037875, intron 5 of 5) L1MA4A|LINE|L1 -105806 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 207-254 chr6 40429938 40430100 + 2 NA intron (NM_020737, intron 2 of 2) L1MC5a|LINE|L1 51682 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 444-119 chr2 100410554 100410904 + 2 NA intron (NM_004854, intron 2 of 6) intron (NM_004854, intron 2 of 6) 6939 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 351-263 chr20 39832640 39832850 + 2 NA Intergenic Intergenic -171716 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 472-114 chr16 78208737 78209145 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 109287 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 274-71 chr11 45565249 45565468 + 2 NA Intergenic Intergenic 100264 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 247-28 chr1 213912019 213912257 + 2 NA intron (NR_037850, intron 2 of 5) L1ME4a|LINE|L1 -12611 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 541-149 chr22 27001350 27001736 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 58975 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 335-279 chr2 205521458 205521715 + 2 NA intron (NM_205863, intron 20 of 21) L1ME4a|LINE|L1 -160914 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 150-56 chr2 201441165 201441255 + 2 NA intron (NM_015049, intron 1 of 15) intron (NM_015049, intron 1 of 15) 10248 NM_015049 66008 Hs.152774 NM_015049 ENSG00000115993 TRAK2 ALS2CR3|CALS-C|GRIF-1|GRIF1|MILT2|OIP98 trafficking kinesin protein 2 protein-coding 241-293 chr5 27985827 27985998 + 2 NA Intergenic L1MC3|LINE|L1 301753 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 311-206 chr18 2451709 2451988 + 2 NA Intergenic L1MB3|LINE|L1 119657 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 474-234 chr5 92529762 92530097 + 2 NA Intergenic Intergenic 1041414 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 462-305 chrX 103281228 103281619 + 2 NA Intergenic L1MB5|LINE|L1 -4673 NM_001012979 340543 Hs.403462 NM_001012979 ENSG00000204065 TCEAL5 WEX4 transcription elongation factor A like 5 protein-coding 316-531 chr7 156065061 156065347 + 2 NA Intergenic Intergenic 102572 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 318-516 chr7 68252254 68252560 + 2 NA Intergenic L1MB7|LINE|L1 232154 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 277-366 chr6 169517528 169517735 + 2 NA intron (NR_146875, intron 19 of 20) L1M4|LINE|L1 184398 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 514-53 chr11 128313558 128314017 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger 105021 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 268-148 chr16 77388673 77388883 + 2 NA intron (NM_199355, intron 3 of 22) intron (NM_199355, intron 3 of 22) 46256 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 452-52 chr12 14374403 14374825 + 2 NA intron (NM_001286515, intron 1 of 12) intron (NM_001286515, intron 1 of 12) 8932 NM_001286514 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 447-243 chr7 7040281 7040566 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 26622 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 369-343 chr5 164549847 164550129 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 79709 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 483-19 chr1 241659998 241660469 + 2 NA intron (NM_001367482, intron 1 of 27) L1PA11|LINE|L1 7952 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 219-249 chr3 192292572 192292720 + 2 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) 54016 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 271-251 chr22 33084953 33085108 + 2 NA Intergenic AluSx1|SINE|Alu -23499 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 381-170 chr19 45556277 45556557 + 2 NA intron (NM_025136, intron 1 of 1) AluJr4|SINE|Alu 28385 NM_025136 80207 Hs.466945 NM_025136 ENSG00000125741 OPA3 MGA3 outer mitochondrial membrane lipid metabolism regulator OPA3 protein-coding 349-184 chr15 67269350 67269591 + 2 NA intron (NM_001031715, intron 3 of 20) L1MA4|LINE|L1 -14272 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 179-19 chr12 78706401 78706560 + 2 NA Intergenic L2a|LINE|L2 -157502 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 375-274 chr3 163792092 163792281 + 2 NA Intergenic LOR1a|LTR|ERV1 379370 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 315-446 chr7 64674789 64675076 + 2 NA intron (NM_016220, intron 2 of 6) L1PA15|LINE|L1 -4132 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 460-247 chr5 127812382 127812765 + 2 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 109184 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 204-52 chr12 20665179 20665336 + 2 NA intron (NM_000921, intron 15 of 15) L2b|LINE|L2 -30098 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 592-141 chr5 60069356 60069726 + 2 NA intron (NM_001349243, intron 2 of 16) L1MB1|LINE|L1 -175815 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 510-2 chr1 45992739 45993151 + 2 NA intron (NM_001324320, intron 5 of 29) L1MC3|LINE|L1 128597 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 196-9 chr1 79874618 79874781 + 2 NA Intergenic Intergenic -661056 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 138-102 chrX 15445702 15445817 + 2 NA intron (NM_001018109, intron 5 of 9) intron (NM_001018109, intron 5 of 9) 45550 NR_037859 100532742 Hs.495728 NR_037859 PIR-FIGF - PIR-FIGF readthrough ncRNA 335-559 chr9 21995160 21995404 + 2 NA promoter-TSS (NM_058195) promoter-TSS (NM_058195) 42 NM_001363763 1029 Hs.512599 NM_000077 ENSG00000147889 CDKN2A ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 cyclin dependent kinase inhibitor 2A protein-coding 400-137 chr18 4927947 4928332 + 2 NA Intergenic Intergenic -153043 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 222-23 chr1 217153145 217153290 + 2 NA Intergenic Intergenic -15515 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 326-217 chr18 79764109 79764369 + 2 NA Intergenic Intergenic 82809 NM_001202504 9150 Hs.465490 NM_004715 ENSG00000060069 CTDP1 CCFDN|FCP1 CTD phosphatase subunit 1 protein-coding 411-62 chr11 114436009 114436346 + 2 NA Intergenic AluJb|SINE|Alu -3290 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 174-33 chr12 100421519 100421633 + 2 NA 3' UTR (NM_139319, exon 12 of 12) 3' UTR (NM_139319, exon 12 of 12) -52290 NR_135146 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 163-89 chr3 145975884 145976014 + 2 NA Intergenic Intergenic 93236 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 454-24 chr10 31052831 31053170 + 2 NA Intergenic LTR40c|LTR|ERVL -21063 NM_001143768 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 333-621 chrX 67333663 67333955 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -210212 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 248-350 chr6 63265854 63266075 + 2 NA Intergenic Intergenic 54013 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 277-254 chr3 69583268 69583426 + 2 NA Intergenic MIRb|SINE|MIR -156117 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 292-436 chr8 104638088 104638299 + 2 NA Intergenic Intergenic -49169 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 210-178 chr3 98891333 98891516 + 2 NA intron (NM_080927, intron 1 of 15) intron (NM_080927, intron 1 of 15) 10271 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 362-329 chr5 3056392 3056737 + 2 NA Intergenic Intergenic -121271 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 119-40 chr20 22756594 22756668 + 2 NA Intergenic L1M4|LINE|L1 -71287 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 191-201 chr7 53936487 53936662 + 2 NA Intergenic L1M5|LINE|L1 -124643 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 342-47 chr1 220418100 220418357 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -109908 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 448-25 chr1 240741445 240741780 + 2 NA Intergenic L1M4|LINE|L1 -129457 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 269-418 chr9 19955420 19955654 + 2 NA Intergenic Intergenic -168518 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 369-418 chr8 118859589 118859921 + 2 NA Intergenic Intergenic 92130 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 310-470 chr7 13728286 13728519 + 2 NA Intergenic Intergenic 258112 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 246-333 chr5 110837635 110837824 + 2 NA Intergenic L1MCa|LINE|L1 98722 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 577-7 chr1 63235502 63235790 + 2 NA intron (NR_038252, intron 4 of 11) L1MB2|LINE|L1 81611 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 201-25 chr10 22020872 22021008 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -17210 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 361-197 chr19 53900874 53901099 + 2 NA intron (NM_002739, intron 14 of 17) intron (NM_002739, intron 14 of 17) -11751 NM_031896 59284 Hs.631597 NM_031896 ENSG00000105605 CACNG7 - calcium voltage-gated channel auxiliary subunit gamma 7 protein-coding 422-35 chr10 74853312 74853594 + 2 NA intron (NM_001370144, intron 3 of 15) AluJb|SINE|Alu 26853 NM_001370144 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 183-49 chr15 25634412 25634585 + 2 NA Intergenic Intergenic -195442 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 331-146 chr14 26005868 26006117 + 2 NA Intergenic MIRb|SINE|MIR 547438 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 134-65 chr4 188067249 188067376 + 2 NA Intergenic Intergenic 38275 NM_001303419 205860 Hs.276429 NM_173553 ENSG00000179046 TRIML2 SPRYD6 tripartite motif family like 2 protein-coding 493-10 chr1 79665998 79666324 + 2 NA Intergenic L1MD3|LINE|L1 -659431 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 343-332 chr3 41473683 41473919 + 2 NA intron (NR_136342, intron 30 of 34) L1MA7|LINE|L1 274296 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 170-138 chr8 87709177 87709328 + 2 NA Intergenic L1MA3|LINE|L1 164763 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 333-501 chr6 52115965 52116247 + 2 NA Intergenic Intergenic -28243 NR_029713 406989 NR_029713 ENSG00000207604 MIR206 MIRN206|miRNA206|mir-206 microRNA 206 ncRNA 350-463 chr7 3399915 3400213 + 2 NA intron (NM_152744, intron 1 of 44) L1M4|LINE|L1 98812 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 375-230 chr2 239524775 239524971 + 2 NA Intergenic L1ME3|LINE|L1 123125 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 233-250 chr4 15406337 15406548 + 2 NA intron (NM_001135171, intron 1 of 2) L2c|LINE|L2 21472 NR_125911 101929095 Hs.656908 NR_125911 ENSG00000249252 LOC101929095 - uncharacterized LOC101929095 ncRNA 379-51 chr11 8484010 8484241 + 2 NA intron (NM_001352388, intron 1 of 14) intron (NM_001352388, intron 1 of 14) 109851 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 535-62 chr13 35563266 35563626 + 2 NA intron (NM_001204197, intron 4 of 17) intron (NM_001204197, intron 4 of 17) 86697 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 494-92 chr17 47302726 47303064 + 2 NA TTS (NR_110881) TTS (NR_110881) 20718 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 392-54 chr12 23560492 23560770 + 2 NA intron (NM_001261414, intron 13 of 16) L2a|LINE|L2 23955 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 460-192 chr3 44339705 44340057 + 2 NA intron (NM_001282914, intron 1 of 10) L2c|LINE|L2 1115 NM_173826 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 253-258 chr3 62877645 62877842 + 2 NA Intergenic Intergenic -2327 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 239-335 chr5 150824291 150824445 + 2 NA Intergenic L1MA7|LINE|L1 -22153 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 519-75 chr16 63141764 63142088 + 2 NA Intergenic Intergenic -1105488 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 831-49 chr8 87353428 87353973 + 2 NA exon (NM_173538, exon 10 of 11) exon (NM_173538, exon 10 of 11) 487285 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 192-48 chr12 40857066 40857211 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 29200 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 349-398 chr5 3624402 3624619 + 2 NA Intergenic Intergenic 28678 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 344-333 chr3 135407997 135408300 + 2 NA Intergenic Intergenic -557580 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 228-283 chr5 163860423 163860609 + 2 NA Intergenic L1MC4a|LINE|L1 354897 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 366-150 chr16 46793873 46794179 + 2 NA Intergenic L1MA8|LINE|L1 -30780 NM_001308301 91807 Hs.130465 NM_182493 ENSG00000140795 MYLK3 MLCK|MLCK2|caMLCK myosin light chain kinase 3 protein-coding 289-108 chr12 65017544 65017766 + 2 NA Intergenic MIR3|SINE|MIR -25364 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 347-199 chr2 19478818 19479059 + 2 NA Intergenic MIRc|SINE|MIR -120315 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 646-53 chr19 57567528 57567984 + 2 NA Intergenic MER66-int|LTR|ERV1 -7893 NM_001277092 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 371-164 chr2 45828015 45828272 + 2 NA intron (NM_005400, intron 1 of 14) Tigger8|DNA|TcMar-Tigger 176468 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 261-48 chr10 113186035 113186247 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 56870 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 330-226 chr18 46127724 46127998 + 2 NA intron (NM_138443, intron 8 of 8) intron (NM_138443, intron 8 of 8) 23476 NM_138443 115106 Hs.436617 NM_138443 ENSG00000152240 HAUS1 CCDC5|HEI-C|HEIC|HsT1461 HAUS augmin like complex subunit 1 protein-coding 343-76 chr11 55960671 55960949 + 2 NA Intergenic Intergenic 7653 NM_001005491 282770 Hs.554525 NM_001005491 ENSG00000174970 OR10AG1 OR11-160 olfactory receptor family 10 subfamily AG member 1 protein-coding 334-144 chr14 54225046 54225271 + 2 NA Intergenic L1ME4b|LINE|L1 -171710 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 351-143 chr15 26351447 26351716 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 235768 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 265-279 chr4 103526339 103526538 + 2 NA Intergenic Intergenic 101396 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 447-96 chr17 50010350 50010779 + 2 NA Intergenic L1M4|LINE|L1 -15340 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 317-171 chr15 88790372 88790566 + 2 NA Intergenic Intergenic -12967 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 277-326 chr5 63934219 63934397 + 2 NA Intergenic Intergenic 27984 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 309-585 chrX 96015245 96015496 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 322532 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 508-65 chr15 25209969 25210276 + 2 NA TTS (NR_003314) TTS (NR_003314) 204 NR_003314 100033799 NR_003314 ENSG00000201326 SNORD115-22 HBII-52-22 small nucleolar RNA, C/D box 115-22 snoRNA 362-427 chr8 49312652 49312873 + 2 NA Intergenic L1M4|LINE|L1 199418 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 548-70 chr14 59589631 59590066 + 2 NA Intergenic Intergenic -13036 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 263-260 chr3 83343958 83344121 + 2 NA Intergenic Intergenic 1357897 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 312-2 chr1 4482290 4482526 + 2 NA Intergenic Intergenic 70357 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 288-202 chr2 106803836 106804046 + 2 NA non-coding (NR_136313, exon 5 of 5) non-coding (NR_136313, exon 5 of 5) 82087 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 307-7 chr1 67195247 67195426 + 2 NA intron (NM_144701, intron 4 of 10) intron (NM_144701, intron 4 of 10) 28882 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 161-56 chr2 126314431 126314556 + 2 NA Intergenic Intergenic -196508 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 361-239 chr2 163560666 163560849 + 2 NA Intergenic Intergenic 175251 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 292-266 chr21 35286169 35286337 + 2 NA Intergenic MLT1M|LTR|ERVL-MaLR -236955 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 328-264 chr2 76580424 76580703 + 2 NA Intergenic Intergenic -405402 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 271-286 chr3 191310306 191310502 + 2 NA intron (NM_198152, intron 3 of 8) LTR40a|LTR|ERVL -18990 NM_174908 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 379-294 chr6 68579072 68579363 + 2 NA Intergenic Intergenic 55107 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 345-206 chr17 70259881 70260092 + 2 NA Intergenic L1MD2|LINE|L1 90451 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 270-343 chr6 161332261 161332475 + 2 NA Intergenic MER4-int|LTR|ERV1 -58307 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 631-70 chr2 86650212 86650749 + 2 NA intron (NM_001198954, intron 2 of 7) L1MB7|LINE|L1 -26603 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 274-189 chr2 5722924 5723119 + 2 NA Intergenic Intergenic 30637 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 240-114 chr12 127607621 127607809 + 2 NA Intergenic MIR|SINE|MIR 28752 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 385-119 chr16 5958046 5958324 + 2 NA Intergenic Intergenic -60839 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 297-340 chr4 96465466 96465686 + 2 NA intron (NR_147149, intron 2 of 3) L1MEb|LINE|L1 154873 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 183-90 chr3 26365496 26365616 + 2 NA Intergenic Intergenic -257250 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 223-305 chr6 120708046 120708206 + 2 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 626354 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 332-544 chr8 121035688 121035945 + 2 NA Intergenic L1M3c|LINE|L1 -223770 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 265-78 chr12 39953100 39953316 + 2 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 152873 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 349-416 chr5 66793094 66793366 + 2 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -35543 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 141-27 chr15 67454851 67454963 + 2 NA intron (NR_040052, intron 3 of 5) L1MB7|LINE|L1 66066 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 206-138 chr20 9728954 9729113 + 2 NA intron (NM_177990, intron 1 of 9) L1MC4a|LINE|L1 110043 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 545-160 chr4 66990444 66990807 + 2 NA Intergenic Intergenic 431375 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 257-281 chr3 167501370 167501538 + 2 NA intron (NM_001348951, intron 17 of 18) MIR|SINE|MIR -27322 NM_001012303 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 527-55 chr12 1717832 1718197 + 2 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 26944 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 475-254 chr7 10996207 10996555 + 2 NA intron (NR_033436, intron 3 of 16) L2a|LINE|L2 22509 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 318-322 chr20 52164073 52164273 + 2 NA intron (NM_199427, intron 4 of 8) AluJb|SINE|Alu 27606 NM_022088 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 236-172 chr2 77789346 77789529 + 2 NA intron (NR_110288, intron 3 of 3) MIRb|SINE|MIR -126497 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 406-275 chr7 49446793 49447021 + 2 NA Intergenic L1M3d|LINE|L1 -326731 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 305-38 chr1 193804759 193805051 + 2 NA Intergenic Intergenic 500160 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 370-408 chr7 7025710 7026035 + 2 NA Intergenic L1MA9|LINE|L1 41173 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 708-72 chr7 14576118 14576728 + 2 NA intron (NM_001350717, intron 18 of 24) intron (NM_001350717, intron 18 of 24) 265027 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 137-73 chr5 94699523 94699607 + 2 NA Intergenic Intergenic 80896 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 412-66 chr12 21041831 21042162 + 2 NA intron (NM_001009562, intron 5 of 12) L1MA1|LINE|L1 26300 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 340-201 chr17 52320068 52320397 + 2 NA Intergenic L1MC4a|LINE|L1 -70290 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 232-7 chr1 65830882 65831064 + 2 NA intron (NM_002600, intron 1 of 16) L1MC3|LINE|L1 38078 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 166-69 chr22 43324098 43324225 + 2 NA intron (NM_173050, intron 2 of 21) MER94|DNA|hAT-Blackjack 19211 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 514-253 chr6 124720298 124720807 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -241993 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 215-156 chr2 151141035 151141166 + 2 NA Intergenic Intergenic 120763 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 196-74 chr14 64833211 64833364 + 2 NA intron (NM_001355436, intron 1 of 35) AluSx|SINE|Alu -9907 NM_001024858 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 519-133 chr20 42167629 42168002 + 2 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -517668 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 235-329 chr7 53208698 53208877 + 2 NA Intergenic L1M4|LINE|L1 173154 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 382-67 chr11 107972591 107972932 + 2 NA Intergenic Intergenic -36137 NM_003478 8065 Hs.440320 NM_003478 ENSG00000166266 CUL5 CUL-5|VACM-1|VACM1 cullin 5 protein-coding 567-206 chr9 119375631 119376026 + 2 NA Intergenic Intergenic -6393 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 447-165 chr3 38484289 38484696 + 2 NA 3' UTR (NM_001106, exon 11 of 11) 3' UTR (NM_001106, exon 11 of 11) -11780 NR_153326 9941 Hs.517897 NM_005107 ENSG00000157036 EXOG ENDOGL1|ENDOGL2|ENGL|ENGL-a|ENGL-b|ENGLA|ENGLB exo/endonuclease G protein-coding 707-112 chr9 102322658 102323244 + 2 NA Intergenic L1MC3|LINE|L1 -196686 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 293-278 chr3 140516791 140517078 + 2 NA intron (NM_022131, intron 8 of 16) L1PB1|LINE|L1 -8145 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 187-48 chr14 66689059 66689181 + 2 NA intron (NM_001024218, intron 2 of 21) L1M2|LINE|L1 181713 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 396-98 chr13 76024278 76024530 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -89272 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 345-162 chr14 86596984 86597219 + 2 NA Intergenic Intergenic -308677 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 336-600 chrX 85687827 85688155 + 2 NA Intergenic MLT2B4|LTR|ERVL -147789 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 401-158 chr2 58595260 58595535 + 2 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 74644 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 416-217 chr3 30920047 30920323 + 2 NA Intergenic Intergenic -25524 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 499-101 chr19 27356630 27356964 + 2 NA Intergenic ALR/Alpha|Satellite|centr -436634 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 461-141 chr2 130017377 130017714 + 2 NA Intergenic Intergenic 33586 NR_026758 440905 Hs.469918 NM_001013711 ENSG00000286058 FAR2P1 HEL-182 fatty acyl-CoA reductase 2 pseudogene 1 pseudo 228-132 chr17 59632681 59632901 + 2 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 12896 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 562-124 chr2 229104797 229105149 + 2 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 127119 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 408-227 chr4 37584270 37584529 + 2 NA intron (NM_018302, intron 1 of 2) intron (NM_018302, intron 1 of 2) 166 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 308-143 chr14 59063793 59063986 + 2 NA Intergenic Intergenic -124778 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 222-106 chr14 26237222 26237370 + 2 NA Intergenic Intergenic 316134 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 289-415 chr6 66354153 66354372 + 2 NA Intergenic Intergenic 566383 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 213-106 chr16 35936667 35936874 + 2 NA Intergenic ALR/Alpha|Satellite|centr 190218 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 370-93 chr11 84730889 84731192 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -10098 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 420-42 chr10 85090465 85090787 + 2 NA Intergenic L1MB1|LINE|L1 108279 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 391-136 chr17 41129902 41130273 + 2 NA intron (NM_001277332, intron 3 of 5) L1M8|LINE|L1 -5905 NM_031854 83755 Hs.572443 NM_031854 ENSG00000213416 KRTAP4-12 KAP4.12|KRTAP4.12 keratin associated protein 4-12 protein-coding 568-160 chr5 65211990 65212380 + 2 NA intron (NR_135689, intron 21 of 25) MER5A|DNA|hAT-Charlie 269735 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 559-109 chr20 56077873 56078285 + 2 NA Intergenic Intergenic -72560 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 191-206 chr8 51241807 51241956 + 2 NA Intergenic MamRep1151|LTR?|LTR? 567564 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 541-118 chr2 80698543 80699045 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 385415 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 342 chr1 4467782 4467966 + 2 NA Intergenic AluSx|SINE|Alu 55823 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 288-264 chr3 73305205 73305486 + 2 NA Intergenic L1ME4a|LINE|L1 128650 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 271-201 chr2 79453424 79453660 + 2 NA Intergenic Intergenic 47302 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 313-239 chr2 31035995 31036250 + 2 NA intron (NM_024572, intron 1 of 14) L1M4|LINE|L1 93518 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 258-70 chr11 86659428 86659595 + 2 NA intron (NM_001014811, intron 1 of 13) intron (NM_001014811, intron 1 of 13) 12687 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 385-80 chr13 36700499 36700747 + 2 NA Intergenic Intergenic 26603 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 489-18 chr1 218432180 218432635 + 2 NA intron (NR_138148, intron 2 of 6) intron (NR_138148, intron 2 of 6) -5226 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 251-387 chr8 64525129 64525363 + 2 NA Intergenic Intergenic 52017 NR_015374 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 514-110 chr16 26761604 26762044 + 2 NA Intergenic Intergenic -305103 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 273-233 chr2 125131360 125131527 + 2 NA Intergenic Intergenic 986542 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 297-484 chr8 108302725 108302930 + 2 NA Intergenic L1ME1|LINE|L1 -54110 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 313-293 chr2 216914088 216914303 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 43423 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 245-150 chr16 10151603 10151759 + 2 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 30386 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 302-187 chr18 70381205 70381373 + 2 NA non-coding (NR_110764, exon 3 of 3) non-coding (NR_110764, exon 3 of 3) 3302 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 209-196 chr3 33146418 33146581 + 2 NA 3' UTR (NM_006371, exon 7 of 7) 3' UTR (NM_006371, exon 7 of 7) 32541 NM_006371 10491 Hs.517888 NM_006371 ENSG00000170275 CRTAP CASP|LEPREL3|OI7|P3H5 cartilage associated protein protein-coding 355-55 chr10 66125199 66125469 + 2 NA intron (NM_001127384, intron 13 of 17) L1MCa|LINE|L1 553909 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 324-224 chr18 33865041 33865244 + 2 NA intron (NM_001353232, intron 9 of 9) intron (NM_001353232, intron 9 of 9) 183470 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 457-207 chr5 113028339 113028749 + 2 NA intron (NM_001085377, intron 18 of 18) intron (NM_001085377, intron 18 of 18) 51746 NM_152624 167227 Hs.443875 NM_152624 ENSG00000172795 DCP2 NUDT20 decapping mRNA 2 protein-coding 331-545 chr8 135815400 135815616 + 2 NA Intergenic Intergenic 358052 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 213-196 chr4 33388708 33388878 + 2 NA Intergenic Intergenic 651100 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 236-13 chr1 99697866 99698069 + 2 NA intron (NR_031666, intron 1 of 4) L1MC3|LINE|L1 14986 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 197-143 chr3 140048031 140048135 + 2 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 112898 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 251-286 chr5 17056095 17056337 + 2 NA Intergenic Intergenic 99776 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 371-163 chr2 45134013 45134234 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 120818 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 333-503 chr6 56505929 56506255 + 2 NA intron (NM_001144770, intron 69 of 94) intron (NM_001144770, intron 69 of 94) -111964 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 354-455 chr8 59926223 59926425 + 2 NA Intergenic Intergenic 355076 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 299-73 chr11 24310651 24310895 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -186280 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 318-81 chr10 96328291 96328499 + 2 NA intron (NM_004088, intron 7 of 10) intron (NM_004088, intron 7 of 10) 23961 NM_004088 1791 Hs.534206 NM_004088 ENSG00000107447 DNTT TDT DNA nucleotidylexotransferase protein-coding 340-277 chr2 125377488 125377704 + 2 NA Intergenic L2a|LINE|L2 740389 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 452-102 chr16 59109485 59109869 + 2 NA Intergenic Intergenic -375361 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 339-454 chr5 95420941 95421264 + 2 NA intron (NM_152548, intron 5 of 9) L2c|LINE|L2 29736 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 312-443 chr6 5683234 5683415 + 2 NA intron (NR_110842, intron 2 of 3) L2a|LINE|L2 11948 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 380-325 chr5 169041599 169041815 + 2 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 28480 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 401-290 chr6 129951975 129952353 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -66205 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 345-418 chr5 55431620 55431887 + 2 NA intron (NR_103485, intron 5 of 6) L1M2|LINE|L1 77173 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 619-7 chr1 89161122 89161548 + 2 NA intron (NM_207398, intron 3 of 10) L1PA13|LINE|L1 14668 NM_207398 388646 Hs.591450 NM_207398 ENSG00000213512 GBP7 GBP4L guanylate binding protein 7 protein-coding 722 chr1 7618628 7619174 + 2 NA intron (NM_001349608, intron 5 of 21) intron (NM_001349608, intron 5 of 21) -50829 NM_001349620 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 363-123 chr13 76841186 76841422 + 2 NA Intergenic Intergenic 45101 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 568-207 chr9 126587213 126587609 + 2 NA Intergenic MIR|SINE|MIR -27032 NM_001174147 4010 Hs.129133 NM_002316 ENSG00000136944 LMX1B LMX1.2|NPS1 LIM homeobox transcription factor 1 beta protein-coding 246-336 chr5 124139166 124139347 + 2 NA intron (NR_125774, intron 4 of 5) MIR|SINE|MIR 299264 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 191-85 chr18 13362718 13362861 + 2 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 64745 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 287-119 chr12 128279671 128279897 + 2 NA intron (NM_001136103, intron 1 of 8) L2a|LINE|L2 12381 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 360-315 chr3 147688485 147688680 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 267255 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 329-243 chr18 68070616 68070879 + 2 NA Intergenic L1M8|LINE|L1 -255925 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 466-101 chr17 14968547 14968989 + 2 NA Intergenic L1PB1|LINE|L1 -46037 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 336-306 chr2 194436596 194436831 + 2 NA Intergenic L1MA9|LINE|L1 92444 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 134-45 chr2 142928396 142928491 + 2 NA intron (NM_001199241, intron 5 of 14) intron (NM_001199241, intron 5 of 14) 50779 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 581-140 chr5 122263145 122263636 + 2 NA Intergenic Intergenic -48301 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 354-325 chr4 55818123 55818447 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -1718 NM_001351574 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 216-301 chr6 51967669 51967834 + 2 NA intron (NM_138694, intron 35 of 66) intron (NM_138694, intron 35 of 66) 119862 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 413-77 chr13 60321051 60321438 + 2 NA Intergenic L2b|LINE|L2 -53140 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 318-115 chr11 105843770 105843975 + 2 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 178368 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 317-276 chr20 41795748 41796015 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -177504 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 581-40 chr13 86590470 86590887 + 2 NA Intergenic Intergenic -321242 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 254-290 chr4 179529745 179529990 + 2 NA Intergenic Intergenic -1621931 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 329-247 chr19 36678356 36678552 + 2 NA Intergenic L1MA7|LINE|L1 8995 NR_110708 101927621 Hs.125653 NR_110707 ENSG00000225975 LINC01534 - long intergenic non-protein coding RNA 1534 ncRNA 356-267 chr2 171648263 171648528 + 2 NA Intergenic L1MA3|LINE|L1 -39074 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 255-265 chr3 94705816 94706050 + 2 NA Intergenic AluJb|SINE|Alu -232330 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 262-106 chr12 132928458 132928638 + 2 NA intron (NM_183238, intron 4 of 4) Kanga2_a|DNA|TcMar-Tc2 27758 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 303-257 chr20 59704328 59704492 + 2 NA intron (NM_001199506, intron 1 of 12) L1M5|LINE|L1 -16800 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 307-272 chr20 32706402 32706671 + 2 NA intron (NM_001099339, intron 5 of 8) intron (NM_001099339, intron 5 of 8) -32595 NM_182584 284805 Hs.353262 NM_182584 ENSG00000198547 C20orf203 - chromosome 20 open reading frame 203 protein-coding 340-199 chr17 30959787 30960057 + 2 NA TTS (NM_018404) TTS (NM_018404) -11117 NM_197939 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 251-177 chr2 100480849 100481057 + 2 NA intron (NM_001011717, intron 7 of 9) MER5A|DNA|hAT-Charlie 10471 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 227-88 chr12 94353631 94353791 + 2 NA intron (NR_160431, intron 7 of 12) L1MA5|LINE|L1 91190 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 277-123 chr14 85677441 85677651 + 2 NA Intergenic Intergenic 144197 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 311-146 chr14 73344690 73344999 + 2 NA intron (NM_001005743, intron 4 of 12) intron (NM_001005743, intron 4 of 12) -98843 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 450-222 chr4 58287806 58288081 + 2 NA Intergenic Intergenic 248385 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 312-298 chr20 55789475 55789743 + 2 NA Intergenic Intergenic 215910 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 491-216 chr5 102465486 102465853 + 2 NA intron (NM_173488, intron 4 of 13) intron (NM_173488, intron 4 of 13) 33332 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 188-79 chr17 65760025 65760178 + 2 NA intron (NM_001353129, intron 21 of 26) L1MCa|LINE|L1 66350 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 326-339 chr3 83768904 83769137 + 2 NA Intergenic Intergenic 1100555 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 252-92 chr12 55444902 55445146 + 2 NA Intergenic Intergenic -7190 NM_054105 341416 Hs.524483 NM_054105 ENSG00000179695 OR6C2 OR6C67 olfactory receptor family 6 subfamily C member 2 protein-coding 442-65 chr13 85064006 85064416 + 2 NA TTS (NR_126383) TTS (NR_126383) 83846 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 333-626 chrX 125734129 125734308 + 2 NA Intergenic L1MA3|LINE|L1 -375544 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 193-172 chr6 48041968 48042113 + 2 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 26649 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 239-87 chr13 66332622 66332811 + 2 NA intron (NM_001318373, intron 3 of 3) L2c|LINE|L2 114466 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 124-69 chr7 42302635 42302700 + 2 NA Intergenic L1MC5a|LINE|L1 -65458 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 436-40 chr10 98959264 98959649 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -34888 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 239-315 chr5 73156694 73156878 + 2 NA Intergenic Intergenic -6194 NR_134252 105379030 NR_134252 ENSG00000251599 LOC105379030 - uncharacterized LOC105379030 ncRNA 452-178 chr3 191784616 191784969 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 323629 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 242-422 chr9 12486598 12486747 + 2 NA Intergenic L1MC1|LINE|L1 -206713 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 387-90 chr12 126812560 126812858 + 2 NA Intergenic Intergenic -40447 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 340-560 chr8 139500570 139500804 + 2 NA Intergenic Intergenic 202436 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 263-75 chr11 124491609 124491848 + 2 NA Intergenic L2a|LINE|L2 -50643 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 572-133 chr5 15558193 15558666 + 2 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 56573 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 214-321 chr8 77299387 77299538 + 2 NA Intergenic Intergenic -151235 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 266-239 chr3 28542994 28543194 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -32184 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 320-511 chr7 39631574 39631838 + 2 NA intron (NM_005402, intron 1 of 4) L1M5|LINE|L1 8134 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 759-62 chr6 40614006 40614524 + 2 NA Intergenic L1ME2z|LINE|L1 -26901 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 266-11 chr1 79175678 79175919 + 2 NA Intergenic L2|LINE|L2 -169068 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 263-453 chr9 94095609 94095856 + 2 NA intron (NM_152422, intron 5 of 8) L1MA5A|LINE|L1 11268 NM_001253829 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 206-24 chr10 4291911 4292110 + 2 NA Intergenic Intergenic -48098 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 252-439 chr8 131876633 131876799 + 2 NA Intergenic Intergenic -27377 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 358-157 chr17 30170274 30170593 + 2 NA intron (NM_032141, intron 2 of 6) L1MA8|LINE|L1 -53273 NR_036149 100423003 NR_036149 ENSG00000284399 MIR3184 - microRNA 3184 ncRNA 281-354 chr5 39492346 39492531 + 2 NA Intergenic L1ME3G|LINE|L1 -27993 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 305-424 chr5 21259978 21260271 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -199356 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 243-118 chr13 105873534 105873767 + 2 NA Intergenic Intergenic 166820 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 381-275 chr4 91017194 91017515 + 2 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 782323 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 194-218 chr8 134373055 134373206 + 2 NA Intergenic L2a|LINE|L2 -224941 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 603-25 chr11 33352069 33352613 + 2 NA intron (NM_001278162, intron 15 of 15) intron (NM_001278162, intron 15 of 15) -23767 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 186-7 chr1 89665528 89665682 + 2 NA intron (NM_032270, intron 1 of 2) Tigger3b|DNA|TcMar-Tigger 32485 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 402-101 chr15 95718395 95718610 + 2 NA Intergenic Intergenic 285409 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 302-229 chr2 134233507 134233712 + 2 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) -20463 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 226-215 chr3 21800827 21801005 + 2 NA Intergenic L1MB5|LINE|L1 -49706 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 215-66 chr12 48415998 48416182 + 2 NA Intergenic L2a|LINE|L2 -56575 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 578-125 chr4 20780130 20780626 + 2 NA intron (NM_025221, intron 2 of 7) L2b|LINE|L2 70290 NM_147181 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 390-276 chr4 172669134 172669409 + 2 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) 19646 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 240-301 chr3 169055345 169055547 + 2 NA Intergenic L2b|LINE|L2 90077 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 325-283 chr2 139114690 139114916 + 2 NA Intergenic Intergenic 217479 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 853-12 chr17 71564626 71565338 + 2 NA Intergenic MIRc|SINE|MIR -362803 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 334-486 chr7 8118861 8119070 + 2 NA intron (NR_146928, intron 13 of 14) MER5A|DNA|hAT-Charlie 143087 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 220-132 chr17 54670252 54670408 + 2 NA Intergenic Intergenic -230361 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 306-187 chr16 82406472 82406726 + 2 NA Intergenic L1ME4c|LINE|L1 -220370 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 492-208 chr5 57655681 57656030 + 2 NA intron (NR_104668, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 5195 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 340-302 chr2 228439519 228439736 + 2 NA Intergenic L1M5|LINE|L1 171768 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 226-42 chr10 56295470 56295618 + 2 NA Intergenic HERVL40-int|LTR|ERVL 65715 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 201-205 chr5 115015710 115015862 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 154122 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 279-393 chr7 48373274 48373482 + 2 NA intron (NM_152701, intron 33 of 61) intron (NM_152701, intron 33 of 61) 201920 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 552-196 chr7 4302346 4302884 + 2 NA Intergenic Intergenic -167778 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 189-20 chr10 72945208 72945352 + 2 NA intron (NM_001318124, intron 1 of 3) MLT1F|LTR|ERVL-MaLR 9526 NM_001318125 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 462-93 chr15 92545129 92545433 + 2 NA Intergenic Intergenic 26982 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 421-284 chr7 53361857 53362204 + 2 NA Intergenic Intergenic 326397 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 283-245 chr2 154797654 154797888 + 2 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 99076 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 239-443 chrX 50171848 50171997 + 2 NA Intergenic Intergenic 28450 NM_139289 8852 Hs.97633 NM_003886 ENSG00000147081 AKAP4 AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82 A-kinase anchoring protein 4 protein-coding 527-140 chr2 143706252 143706740 + 2 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -230571 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 548-185 chr5 96037261 96037631 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) -41692 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 357-236 chr20 21792009 21792197 + 2 NA Intergenic Intergenic 86439 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 706-42 chr2 83442697 83443346 + 2 NA Intergenic Intergenic -79793 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 342-239 chr2 76874622 76874859 + 2 NA intron (NR_146416, intron 1 of 1) L1ME4a|LINE|L1 -111225 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 270-12 chr1 92701863 92702121 + 2 NA intron (NM_001350198, intron 5 of 19) intron (NM_001350198, intron 5 of 19) 83116 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 192-8 chr1 116379609 116379778 + 2 NA intron (NM_001160233, intron 1 of 22) intron (NM_001160233, intron 1 of 22) -3677 NM_001160234 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 593-35 chr12 59823828 59824336 + 2 NA Intergenic Intergenic 134712 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 243-121 chr14 43658606 43658834 + 2 NA Intergenic MER89-int|LTR|ERV1 848563 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 220-23 chr1 172189912 172190079 + 2 NA intron (NR_146559, intron 15 of 20) MSTB|LTR|ERVL-MaLR -45160 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 417-37 chr10 65439051 65439361 + 2 NA Intergenic Intergenic -132219 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 554-141 chr21 28562730 28563091 + 2 NA Intergenic L1PA16|LINE|L1 23592 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 457-78 chr16 8510220 8510525 + 2 NA Intergenic Intergenic 79466 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 323-44 chr10 25389482 25389785 + 2 NA intron (NM_020752, intron 2 of 10) MER52D|LTR|ERV1 -213357 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 519-130 chr20 7746758 7747248 + 2 NA Intergenic Intergenic 193455 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 302-22 chr1 178785872 178786056 + 2 NA intron (NM_152663, intron 4 of 19) Tigger2a|DNA|TcMar-Tigger 60720 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 311-321 chr21 45587890 45588066 + 2 NA Intergenic L1MEc|LINE|L1 -5676 NR_146912 105372840 Hs.406003 NR_146912 ENSG00000233922 LINC01694 - long intergenic non-protein coding RNA 1694 ncRNA 220-122 chr16 35723150 35723317 + 2 NA Intergenic LTR10E|LTR|ERV1 -23319 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 390-206 chr20 4902512 4902894 + 2 NA intron (NM_005116, intron 4 of 16) intron (NM_005116, intron 4 of 16) -79095 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 167-79 chr3 150570149 150570312 + 2 NA intron (NM_001319043, intron 8 of 12) intron (NM_001319043, intron 8 of 12) 23443 NM_032025 83939 Hs.655782 NM_032025 ENSG00000144895 EIF2A CDA02|EIF-2A|MST089|MSTP004|MSTP089 eukaryotic translation initiation factor 2A protein-coding 342-208 chr18 78097230 78097528 + 2 NA Intergenic Intergenic -103652 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 218-37 chr10 120086945 120087136 + 2 NA Intergenic L3|LINE|CR1 128527 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 231-166 chr2 88303044 88303245 + 2 NA Intergenic Intergenic 130005 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 313-570 chrX 58309902 58310205 + 2 NA Intergenic ALR/Alpha|Satellite|centr -399420 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 712-45 chr2 119854075 119854704 + 2 NA intron (NM_002830, intron 2 of 26) LTR9B|LTR|ERV1 94467 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 367-431 chr7 146742748 146743030 + 2 NA Intergenic Intergenic -31382 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 342-460 chr6 76343986 76344207 + 2 NA Intergenic L1MEd|LINE|L1 249527 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 377-215 chr2 123669258 123669490 + 2 NA Intergenic Intergenic 355800 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 764-2 chr1 89100827 89101351 + 2 NA Intergenic MER89-int|LTR|ERV1 25025 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 256-28 chr1 237617715 237617872 + 2 NA intron (NM_001035, intron 38 of 104) intron (NM_001035, intron 38 of 104) 146674 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 288-6 chr1 36717675 36717831 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -234439 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 225-232 chr3 193756797 193757014 + 2 NA Intergenic L1MEf|LINE|L1 87104 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 440-207 chr5 125024723 125025154 + 2 NA Intergenic L2a|LINE|L2 -11893 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 302-252 chr20 58438852 58439062 + 2 NA exon (NM_004738, exon 4 of 6) exon (NM_004738, exon 4 of 6) 49728 NM_001195677 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 893-21 chr16 6946781 6947391 + 2 NA intron (NM_001142334, intron 1 of 13) MIR|SINE|MIR 173277 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 299-429 chr7 115551650 115551942 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 29645 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 205-173 chr22 40546486 40546643 + 2 NA intron (NM_020831, intron 3 of 14) L2|LINE|L2 -12737 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 344-225 chr2 14792192 14792469 + 2 NA Intergenic MER47B|DNA|TcMar-Tigger 159613 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 339-378 chr3 104906944 104907192 + 2 NA Intergenic LTR12C|LTR|ERV1 -459645 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 321-260 chr19 20472869 20473093 + 2 NA Intergenic Intergenic -48016 NR_036455 664701 Hs.631635 NM_001039884 ZNF826P ZNF826 zinc finger protein 826, pseudogene pseudo 320-21 chr1 118870191 118870404 + 2 NA Intergenic MIRc|SINE|MIR 118046 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 315-493 chr8 127489039 127489230 + 2 NA Intergenic L1MDa|LINE|L1 -6995 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 231-281 chr5 51360082 51360238 + 2 NA Intergenic Intergenic 23172 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 485-209 chr4 91131000 91131423 + 2 NA intron (NM_001145065, intron 10 of 10) L1MC4|LINE|L1 896180 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 330-564 chrX 43598602 43598767 + 2 NA Intergenic Intergenic -56223 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 220-354 chr7 125529152 125529329 + 2 NA Intergenic Intergenic -264949 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 425-189 chr3 114768282 114768505 + 2 NA intron (NM_001164343, intron 4 of 11) intron (NM_001164343, intron 4 of 11) -9286 NM_001164345 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 346-325 chr3 117553674 117553882 + 2 NA Intergenic Intergenic 137147 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 334-420 chr5 42702101 42702278 + 2 NA intron (NM_001242403, intron 6 of 9) L1MA8|LINE|L1 -54629 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 191-197 chr7 18185454 18185595 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -58215 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 353-313 chr3 12172540 12172778 + 2 NA intron (NM_133625, intron 10 of 12) MER77B|LTR|ERVL -13747 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 469-118 chr18 66751925 66752351 + 2 NA Intergenic Intergenic -148048 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 150-17 chr10 94349099 94349231 + 2 NA intron (NM_022451, intron 10 of 20) intron (NM_022451, intron 10 of 20) 13774 NM_022451 64318 Hs.74899 NM_022451 ENSG00000173145 NOC3L AD24|C10orf117|FAD24 NOC3 like DNA replication regulator protein-coding 294-378 chr5 60656591 60656837 + 2 NA intron (NM_001145208, intron 2 of 9) THE1C|LTR|ERVL-MaLR 43452 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 558-230 chr9 27406012 27406400 + 2 NA intron (NM_024761, intron 2 of 3) L1M1|LINE|L1 -109056 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 202-72 chr14 59713561 59713729 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -66625 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 133 chr1 23071716 23071782 + 2 NA intron (NM_015013, intron 11 of 18) MIRb|SINE|MIR 27444 NR_036057 100422866 NR_036057 ENSG00000263793 MIR3115 mir-3115 microRNA 3115 ncRNA 436-280 chr7 31856705 31857075 + 2 NA intron (NM_001191059, intron 8 of 18) MLT1B|LTR|ERVL-MaLR 169675 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 411-313 chr9 86653182 86653452 + 2 NA Intergenic L1MB3|LINE|L1 294189 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 376-30 chr1 238148816 238149141 + 2 NA Intergenic Intergenic -258056 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 214-184 chr2 240081097 240081294 + 2 NA Intergenic L1ME3G|LINE|L1 -35123 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 377-408 chr8 115427039 115427277 + 2 NA intron (NM_001282902, intron 4 of 5) AluJr|SINE|Alu 240855 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 473-195 chr4 61589059 61589507 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 387111 NM_001371342 388-304 chr6 66372784 66373025 + 2 NA Intergenic L1PA10|LINE|L1 585025 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 365-320 chr5 56613277 56613605 + 2 NA Intergenic Intergenic -7185 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 215-62 chr12 9870842 9870985 + 2 NA Intergenic L1ME1|LINE|L1 -1054 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 239-401 chr8 69899504 69899670 + 2 NA Intergenic L3b|LINE|CR1 -64609 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 206-3 chr1 34506666 34506816 + 2 NA Intergenic L2a|LINE|L2 162953 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 299-209 chr2 81616601 81616845 + 2 NA Intergenic HAL1|LINE|L1 -149777 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 134-28 chr14 39293820 39293928 + 2 NA intron (NM_001354150, intron 6 of 23) intron (NM_001354150, intron 6 of 23) 26489 NM_001354156 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 200-167 chr3 7493945 7494110 + 2 NA intron (NM_000844, intron 7 of 9) L1MDb|LINE|L1 41257 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 315-309 chr3 61462474 61462713 + 2 NA Intergenic Intergenic -98978 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 327-217 chr18 64260922 64261098 + 2 NA promoter-TSS (NR_033983) promoter-TSS (NR_033983) -955 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 361-435 chr8 43728793 43728992 + 2 NA Intergenic ALR/Alpha|Satellite|centr 436450 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 274-112 chr13 92994573 92994766 + 2 NA Intergenic MER110|LTR|ERV1 -50672 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 286-402 chr7 12609155 12609347 + 2 NA intron (NR_156701, intron 4 of 14) intron (NR_156701, intron 4 of 14) 19728 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 336-403 chr4 43070901 43071146 + 2 NA Intergenic LTR1B0|LTR|ERV1 177757 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 141-16 chr11 40895576 40895676 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 564010 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 393-76 chr12 129051442 129051699 + 2 NA Intergenic MER102a|DNA|hAT-Charlie -58120 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 400-377 chrX 103105256 103105505 + 2 NA Intergenic AluJr|SINE|Alu -12237 NM_022052 56000 Hs.60386 NM_022052 ENSG00000147206 NXF3 - nuclear RNA export factor 3 protein-coding 653-73 chr2 145121779 145122246 + 2 NA Intergenic Intergenic 454045 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 387-105 chr14 62051822 62052052 + 2 NA intron (NM_001367661, intron 4 of 8) AluJb|SINE|Alu -65420 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 177-138 chr6 49249536 49249701 + 2 NA Intergenic L1MD1|LINE|L1 213635 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 355-179 chr16 23985053 23985242 + 2 NA intron (NM_002738, intron 2 of 16) AluSx1|SINE|Alu 149164 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 524-130 chr20 6396910 6397290 + 2 NA Intergenic HAL1|LINE|L1 -29632 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 683-62 chr5 18923397 18923884 + 2 NA Intergenic L1MC5|LINE|L1 962632 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 264-224 chr2 183759107 183759313 + 2 NA Intergenic Intergenic -619765 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 312-328 chr3 55404928 55405181 + 2 NA Intergenic Intergenic 76344 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 271-325 chr4 162189342 162189565 + 2 NA Intergenic Intergenic -25419 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 794-34 chr4 100915874 100916416 + 2 NA Intergenic Intergenic -241032 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 367-197 chr2 59692704 59692998 + 2 NA Intergenic Intergenic 475143 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 358-117 chr14 48513794 48514057 + 2 NA Intergenic Intergenic -718911 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 242-141 chr18 2011593 2011782 + 2 NA Intergenic Intergenic 559818 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 430-72 chr13 48719722 48720028 + 2 NA Intergenic Intergenic 65946 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 378-446 chr8 135288413 135288661 + 2 NA intron (NR_120395, intron 2 of 5) L3|LINE|CR1 54406 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 401-169 chr2 119834550 119834913 + 2 NA intron (NM_002830, intron 2 of 26) MIR|SINE|MIR 74809 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 332-555 chr8 136867522 136867762 + 2 NA intron (NR_147196, intron 4 of 5) L1PREC2|LINE|L1 336844 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 290-132 chr14 58856468 58856695 + 2 NA intron (NR_110547, intron 1 of 5) L1MA4A|LINE|L1 28293 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 249-53 chr10 65301752 65301946 + 2 NA Intergenic L2a|LINE|L2 -269576 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 308-493 chr8 87355481 87355726 + 2 NA intron (NM_173538, intron 10 of 10) intron (NM_173538, intron 10 of 10) 489188 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 331-193 chr16 63911717 63911952 + 2 NA Intergenic Intergenic 1210229 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 506-297 chr8 136816548 136816931 + 2 NA intron (NR_147196, intron 4 of 5) MIR|SINE|MIR 285941 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 353-344 chr3 157123622 157123916 + 2 NA promoter-TSS (NR_034007) promoter-TSS (NR_034007) -767 NR_034007 339894 Hs.478050 NR_034007 ENSG00000243629 LINC00880 - long intergenic non-protein coding RNA 880 ncRNA 362-367 chr5 173587821 173588153 + 2 NA Intergenic L1M4|LINE|L1 8353 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 315-231 chr2 40552657 40552890 + 2 NA Intergenic Intergenic -40338 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 402-130 chr19 14645516 14645889 + 2 NA intron (NM_032571, intron 8 of 15) AluJr|SINE|Alu 23489 NR_132784 106635534 NR_132784 SNORA104 - small nucleolar RNA, H/ACA box 104 snoRNA 473-27 chr10 23472455 23472730 + 2 NA Intergenic MER4A1|LTR|ERV1 33323 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 285-280 chr3 115053582 115053754 + 2 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 17746 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 396-338 chr7 109527728 109528020 + 2 NA Intergenic Intergenic 432339 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 266-446 chr9 29287120 29287347 + 2 NA Intergenic Intergenic -73632 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 323-145 chr14 63948014 63948243 + 2 NA intron (NM_015180, intron 6 of 114) L1ME4a|LINE|L1 95124 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 254-49 chr10 115956249 115956417 + 2 NA Intergenic Intergenic 238456 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 298-118 chr14 60799914 60800093 + 2 NA intron (NM_001177963, intron 3 of 6) Tigger13a|DNA|TcMar-Tigger 65242 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 244-260 chr4 62879844 62880041 + 2 NA Intergenic Intergenic -718177 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 348-332 chr3 169490314 169490591 + 2 NA intron (NM_001366473, intron 1 of 15) L1ME3Cz|LINE|L1 42585 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 508-54 chr12 124936157 124936455 + 2 NA Intergenic MER65A|LTR|ERV1 20759 NR_049820 100847004 NR_049820 ENSG00000265345 MIR5188 mir-5188 microRNA 5188 ncRNA 735-76 chr7 21683449 21684168 + 2 NA exon (NM_001277115, exon 32 of 82) exon (NM_001277115, exon 32 of 82) 140769 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 383-9 chr1 73748305 73748618 + 2 NA Intergenic Intergenic 73782 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 421-69 chr13 86841859 86842197 + 2 NA Intergenic Intergenic -69892 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 342-434 chr5 162894229 162894460 + 2 NA Intergenic L1M7|LINE|L1 -543227 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 213-34 chr10 37757233 37757372 + 2 NA Intergenic L1MEb|LINE|L1 37873 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 395-54 chr11 43763394 43763775 + 2 NA intron (NM_016142, intron 3 of 10) (AT)n|Simple_repeat|Simple_repeat 82846 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 410-122 chr2 6517729 6518048 + 2 NA Intergenic Intergenic 115899 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 361-271 chr22 48358768 48358993 + 2 NA Intergenic Intergenic 84516 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 309-37 chr10 11274138 11274398 + 2 NA intron (NM_001025076, intron 7 of 13) intron (NM_001025076, intron 7 of 13) 70406 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 241-290 chr5 15973249 15973478 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 38181 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 330-390 chr4 131571261 131571456 + 2 NA Intergenic (ATCAATT)n|Simple_repeat|Simple_repeat -193480 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 448-139 chr20 56209169 56209470 + 2 NA Intergenic Intergenic -39413 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 122-39 chr4 33489392 33489473 + 2 NA Intergenic Intergenic 550461 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 241-69 chr11 79841418 79841587 + 2 NA Intergenic Intergenic -400472 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 700-17 chr11 70053253 70053728 + 2 NA Intergenic L1ME3A|LINE|L1 10434 NR_120530 101928443 Hs.313468 NR_120529 ENSG00000248844 LINC02753 - long intergenic non-protein coding RNA 2753 ncRNA 601-25 chr11 91704855 91705240 + 2 NA Intergenic MER117|DNA|hAT-Charlie -519987 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 231-192 chr20 53640053 53640268 + 2 NA Intergenic Intergenic 31806 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 649-51 chr2 84029014 84029520 + 2 NA Intergenic Intergenic -261415 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 285-105 chr13 90022008 90022191 + 2 NA Intergenic Intergenic 97618 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 333-342 chr3 21064241 21064565 + 2 NA Intergenic Intergenic -341323 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 408-38 chr10 33176402 33176751 + 2 NA TTS (NM_001330068) TTS (NM_001330068) -59769 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 448-264 chr7 77528250 77528605 + 2 NA Intergenic Intergenic -8868 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 237-382 chr8 105565234 105565417 + 2 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 245782 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 314-605 chr9 35194292 35194475 + 2 NA intron (NM_006377, intron 1 of 38) HUERS-P3b-int|LTR|ERV1 32374 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 374-310 chr5 75591927 75592290 + 2 NA intron (NR_144315, intron 11 of 13) L1MB3|LINE|L1 -19368 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 175-41 chr12 20489966 20490092 + 2 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -81835 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 147-55 chr3 5418952 5419038 + 2 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat -168740 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 269-122 chr14 80160270 80160470 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -51049 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 304-384 chr4 94719555 94719854 + 2 NA Intergenic L1MA4|LINE|L1 37829 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 129-67 chr5 35395786 35395905 + 2 NA Intergenic L1M5|LINE|L1 -165358 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 266-206 chr2 190091908 190092151 + 2 NA Intergenic Intergenic -29300 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 175-183 chrX 63011199 63011341 + 2 NA Intergenic L1MA4|LINE|L1 340062 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 633-86 chr4 58458110 58458615 + 2 NA Intergenic LTR12C|LTR|ERV1 77966 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 535-192 chr4 186331037 186331494 + 2 NA intron (NR_033900, intron 1 of 3) L1MD1|LINE|L1 65076 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 334-257 chr2 51235609 51235886 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 203146 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 187-164 chr7 96902488 96902634 + 2 NA Intergenic Intergenic -102992 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 436-325 chr9 2312164 2312451 + 2 NA Intergenic L1MA2|LINE|L1 153851 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 468-50 chr11 92457532 92457974 + 2 NA intron (NM_001008781, intron 1 of 24) AluSx|SINE|Alu 105657 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 263-240 chr21 32122344 32122524 + 2 NA Intergenic Intergenic -36139 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 310-76 chr11 38704054 38704265 + 2 NA Intergenic MER53|DNA|hAT 55301 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 425-206 chr4 66244339 66244668 + 2 NA Intergenic Intergenic -32321 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 459-218 chr4 90377976 90378364 + 2 NA intron (NM_207491, intron 3 of 7) intron (NM_207491, intron 3 of 7) 143139 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 432-141 chr2 155014718 155015116 + 2 NA Intergenic Intergenic 316222 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 370-76 chr11 14220157 14220457 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 138178 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 309-3 chr1 37409900 37410190 + 2 NA Intergenic MIR3|SINE|MIR 64398 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 308-232 chr2 81791556 81791778 + 2 NA Intergenic L1ME1|LINE|L1 -324721 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 276-354 chr4 127278213 127278401 + 2 NA Intergenic Intergenic -354650 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 465-279 chr7 110521850 110522160 + 2 NA Intergenic Intergenic -561792 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 179-122 chr8 107852066 107852207 + 2 NA Intergenic L2c|LINE|L2 229803 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 213-80 chr13 78302168 78302345 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) 247401 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 323-240 chr2 45303857 45304115 + 2 NA Intergenic HAL1ME|LINE|L1 -49045 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 185-18 chr1 235584177 235584316 + 2 NA intron (NM_004485, intron 1 of 2) MIRc|SINE|MIR 65538 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 326-395 chr5 11633295 11633610 + 2 NA intron (NM_001288717, intron 2 of 20) L1M4b|LINE|L1 -44386 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 275-102 chr14 37612979 37613191 + 2 NA intron (NM_001310135, intron 2 of 32) L1ME1|LINE|L1 17456 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 295-448 chr7 101478621 101478816 + 2 NA intron (NM_133457, intron 3 of 12) L1ME3Cz|LINE|L1 90288 NR_103749 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 612-102 chr4 70014038 70014575 + 2 NA Intergenic L1PB1|LINE|L1 -14153 NM_000200 3347 Hs.654442 NM_000200 ENSG00000205649 HTN3 HIS2|HTN2|HTN5|PB histatin 3 protein-coding 254-289 chr4 173683748 173683898 + 2 NA Intergenic Intergenic 153365 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 159-66 chr4 61558437 61558583 + 2 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 356338 NM_001371342 383-144 chr16 56070664 56070918 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -114760 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 491-132 chr2 146006403 146006796 + 2 NA Intergenic Intergenic -580458 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 243-476 chr9 86170748 86170941 + 2 NA Intergenic L1MB7|LINE|L1 43304 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 289-293 chr3 31944047 31944205 + 2 NA intron (NM_001174060, intron 1 of 10) L1ME4a|LINE|L1 -37624 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 351-435 chr7 19967726 19968045 + 2 NA intron (NR_110114, intron 4 of 5) L2a|LINE|L2 172541 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 511-87 chr16 55193010 55193385 + 2 NA Intergenic L2a|LINE|L2 -131362 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 466-158 chr20 60969575 60969982 + 2 NA Intergenic L1ME2|LINE|L1 -109286 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 240-207 chr2 33857058 33857195 + 2 NA intron (NR_126403, intron 2 of 5) LTR83|LTR|ERVL -128909 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 466-127 chr2 66869239 66869529 + 2 NA Intergenic Intergenic -35052 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 470-178 chr3 90469661 90470028 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1362223 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 217-354 chr7 111425669 111425819 + 2 NA intron (NM_001350961, intron 4 of 7) intron (NM_001350961, intron 4 of 7) 136547 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 259-254 chr3 89490675 89490925 + 2 NA Intergenic L1MDa|LINE|L1 383179 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 369-363 chr6 126968498 126968780 + 2 NA Intergenic Intergenic -150032 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 264-442 chr9 68605706 68605933 + 2 NA Intergenic L1MC4a|LINE|L1 -59217 NR_109769 101927015 Hs.406454 NR_109769 ENSG00000234506 LINC01506 - long intergenic non-protein coding RNA 1506 ncRNA 469-173 chr3 34360514 34360816 + 2 NA Intergenic L2c|LINE|L2 562035 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 735-37 chr2 16712610 16713028 + 2 NA Intergenic Intergenic -46985 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 227-30 chr10 22804848 22805057 + 2 NA Intergenic Intergenic -90374 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 420-189 chr3 107541806 107542065 + 2 NA intron (NM_001276286, intron 2 of 16) AluJo|SINE|Alu 18973 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 233-341 chr6 100073024 100073200 + 2 NA intron (NR_038384, intron 2 of 2) L1M3b|LINE|L1 -78874 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 456-191 chr22 33667833 33668124 + 2 NA intron (NM_133642, intron 2 of 14) Tigger13a|DNA|TcMar-Tigger 36942 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 364-360 chr5 116120457 116120785 + 2 NA intron (NM_001308080, intron 4 of 6) L1ME1|LINE|L1 35159 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 462-151 chr2 184013218 184013542 + 2 NA Intergenic Intergenic -365595 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 616-148 chr6 133661533 133661995 + 2 NA intron (NR_109982, intron 4 of 8) THE1D|LTR|ERVL-MaLR -159383 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 498-231 chr6 37297291 37297702 + 2 NA intron (NR_130108, intron 8 of 12) intron (NR_130108, intron 8 of 12) -39341 NR_104443 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 278-396 chr7 51902913 51903122 + 2 NA Intergenic Intergenic -509761 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 285-192 chr2 20078272 20078479 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger -26747 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 239-198 chr2 178560234 178560398 + 2 NA exon (NM_133432, exon 155 of 192) exon (NM_133432, exon 155 of 192) 37125 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 249-229 chr2 217544552 217544698 + 2 NA intron (NR_026597, intron 2 of 12) L1ME1|LINE|L1 211968 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 231-284 chr5 56843001 56843173 + 2 NA intron (NM_005921, intron 1 of 19) LTR88b|LTR|Gypsy? 27538 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 220-279 chr5 28960786 28960938 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 33992 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 342-519 chr8 105436862 105437164 + 2 NA intron (NM_001362837, intron 2 of 7) intron (NM_001362837, intron 2 of 7) 117470 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 551-173 chr5 162373259 162373648 + 2 NA Intergenic FLAM_C|SINE|Alu 305811 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 324-402 chr4 120565412 120565625 + 2 NA Intergenic Intergenic 357348 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 277-85 chr12 10076946 10077184 + 2 NA intron (NM_001297749, intron 1 of 3) intron (NM_001297749, intron 1 of 3) 21920 NM_001297749 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 270-114 chr14 77255941 77256132 + 2 NA intron (NM_020431, intron 23 of 23) intron (NM_020431, intron 23 of 23) -10182 NR_031661 100302236 NR_031661 ENSG00000221754 MIR1260A MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a microRNA 1260a ncRNA 344-236 chr2 51842676 51842865 + 2 NA intron (NR_135237, intron 6 of 10) L1M5|LINE|L1 -527878 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 334-387 chr4 100877061 100877287 + 2 NA Intergenic Intergenic -202061 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 208-129 chr2 150614930 150615034 + 2 NA Intergenic LTR33|LTR|ERVL -13915 NR_110247 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 702-99 chr8 82025208 82025693 + 2 NA Intergenic Intergenic -183164 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 665-8 chr1 224716986 224717451 + 2 NA intron (NR_136287, intron 3 of 4) MLT1A0|LTR|ERVL-MaLR 100901 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 160-19 chr11 114620971 114621111 + 2 NA Intergenic Intergenic -25255 NM_017678 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 352-2 chr1 33658975 33659156 + 2 NA intron (NM_052896, intron 26 of 69) intron (NM_052896, intron 26 of 69) 186420 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 335-134 chr12 131451013 131451226 + 2 NA Intergenic L1MB7|LINE|L1 103649 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 358-225 chr2 101071758 101071965 + 2 NA intron (NM_001102426, intron 2 of 19) intron (NM_001102426, intron 2 of 19) 69572 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 310-173 chr16 56955401 56955633 + 2 NA Intergenic MER96B|DNA|hAT-Tip100 -6433 NM_000078 1071 Hs.89538 NM_000078 ENSG00000087237 CETP BPIFF|HDLCQ10 cholesteryl ester transfer protein protein-coding 423-214 chr5 23009628 23010013 + 2 NA Intergenic AluJo|SINE|Alu -156476 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 307-127 chr14 22324309 22324567 + 2 NA Intergenic Intergenic 108315 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 859-8 chr12 34492898 34493429 + 2 NA Intergenic ALR/Alpha|Satellite|centr 470667 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 482-194 chr4 149725476 149725837 + 2 NA intron (NM_001363507, intron 5 of 13) intron (NM_001363507, intron 5 of 13) 90187 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 209-145 chr2 17117214 17117360 + 2 NA Intergenic L1MC5a|LINE|L1 401153 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 332-335 chr3 104002433 104002636 + 2 NA Intergenic MER31A|LTR|ERV1 -478418 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 524-71 chr15 71202630 71203103 + 2 NA intron (NM_024817, intron 2 of 16) MIRb|SINE|MIR -13807 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 359-319 chr3 72937425 72937728 + 2 NA intron (NM_001080393, intron 3 of 6) MIRb|SINE|MIR 49530 NM_001080393 727936 Hs.710275 NM_001080393 ENSG00000172986 GXYLT2 GLT8D4 glucoside xylosyltransferase 2 protein-coding 645-36 chr15 27194219 27194628 + 2 NA intron (NM_001270873, intron 3 of 5) L1MDa|LINE|L1 -33104 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 348-112 chr12 40504047 40504306 + 2 NA intron (NM_173600, intron 69 of 173) intron (NM_173600, intron 69 of 173) 110782 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 258-348 chr6 112732922 112733132 + 2 NA Intergenic Intergenic 385697 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 317-108 chr12 40484631 40484792 + 2 NA exon (NM_173600, exon 56 of 174) exon (NM_173600, exon 56 of 174) 91317 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 245-278 chr5 38518521 38518702 + 2 NA intron (NM_001127671, intron 5 of 19) Tigger3b|DNA|TcMar-Tigger 38035 NM_001127671 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 313-196 chr17 19300180 19300370 + 2 NA intron (NR_048576, intron 2 of 2) LTR47A|LTR|ERVL 5986 NR_048576 100874018 Hs.621672 NR_048576 ENSG00000235397 EPN2-AS1 - EPN2 antisense RNA 1 ncRNA 321-531 chr7 71376085 71376364 + 2 NA intron (NM_022479, intron 2 of 10) intron (NM_022479, intron 2 of 10) -68454 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 304-78 chr11 39473828 39474108 + 2 NA Intergenic Intergenic 819162 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 361-466 chr8 136401973 136402204 + 2 NA Intergenic L1MA5|LINE|L1 -128710 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 240-59 chr10 78881319 78881553 + 2 NA Intergenic L1MD2|LINE|L1 186012 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 398-147 chr19 30769006 30769306 + 2 NA Intergenic L1MB4|LINE|L1 396772 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 489-247 chr8 10292273 10292599 + 2 NA intron (NM_001199729, intron 4 of 6) intron (NM_001199729, intron 4 of 6) -182129 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 216-98 chr14 66273616 66273809 + 2 NA Intergenic LTR33|LTR|ERVL -212659 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 187-181 chr8 131777721 131777881 + 2 NA Intergenic Intergenic -126292 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 258-363 chr7 24739537 24739734 + 2 NA intron (NM_004403, intron 3 of 9) L1MA3|LINE|L1 17829 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 215-247 chr5 18035632 18035777 + 2 NA Intergenic L1ME4a|LINE|L1 228430 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 224-223 chr4 67989260 67989436 + 2 NA Intergenic MER3|DNA|hAT-Charlie 8091 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 519-29 chr10 115392976 115393474 + 2 NA intron (NM_207303, intron 19 of 28) LTR78|LTR|ERV1 299860 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 454-60 chr11 115125123 115125566 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -208233 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 274-234 chr20 22193382 22193601 + 2 NA Intergenic L1PA13|LINE|L1 89310 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 119-26 chr19 52430369 52430453 + 2 NA intron (NM_001143939, intron 1 of 4) Tigger7|DNA|TcMar-Tigger 1263 NM_001351679 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 578-126 chr4 29997472 29997914 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -722676 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 406-257 chr6 38287467 38287782 + 2 NA intron (NM_052893, intron 9 of 11) Tigger3c|DNA|TcMar-Tigger -193972 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 367-267 chr22 42042115 42042447 + 2 NA Intergenic L1MA9|LINE|L1 28531 NM_000262 4668 Hs.75372 NM_000262 ENSG00000198951 NAGA D22S674|GALB alpha-N-acetylgalactosaminidase protein-coding 317-8 chr1 49088388 49088606 + 2 NA intron (NM_001323575, intron 4 of 12) L1PA15|LINE|L1 -168914 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 486-276 chr7 40914741 40915075 + 2 NA Intergenic Intergenic 65031 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 293-48 chr10 106547841 106548041 + 2 NA Intergenic Intergenic 407776 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 525-98 chr18 44259440 44259923 + 2 NA Intergenic Intergenic 272016 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 243-177 chr18 24332564 24332746 + 2 NA intron (NM_080597, intron 7 of 27) Tigger17a|DNA|TcMar-Tigger 10980 NR_031724 100302195 NR_031724 ENSG00000212051 MIR320C2 MIR320C-2|MIRN320C2|hsa-mir-320c-2|mir-320c-2 microRNA 320c-2 ncRNA 558-16 chr1 247138970 247139468 + 2 NA intron (NM_001297567, intron 3 of 3) MER4A1|LTR|ERV1 -26802 NM_207401 388759 Hs.456511 NM_207401 C1orf229 - chromosome 1 open reading frame 229 protein-coding 770-32 chr2 7716075 7716739 + 2 NA Intergenic L1MD2|LINE|L1 183248 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 339-335 chr21 36516530 36516722 + 2 NA intron (NM_001146077, intron 1 of 2) Charlie15b|DNA|hAT-Charlie 26158 NM_001146078 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 371-232 chr22 43655245 43655459 + 2 NA intron (NM_198856, intron 15 of 29) L1MEg|LINE|L1 139098 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 305-136 chr13 52886724 52886941 + 2 NA Intergenic Intergenic -38192 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 161-8 chr10 11608086 11608217 + 2 NA intron (NM_014688, intron 1 of 14) intron (NM_014688, intron 1 of 14) -3150 NR_160647 107984208 Hs.590986 NR_160647 LOC107984208 - uncharacterized LOC107984208 ncRNA 350-315 chr3 87973128 87973455 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -9285 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 525-182 chr4 144596556 144596963 + 2 NA Intergenic Intergenic 49260 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 295-498 chr9 84198102 84198282 + 2 NA Intergenic Intergenic 134749 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 304-450 chr5 178964359 178964533 + 2 NA intron (NM_001178089, intron 4 of 4) intron (NM_001178089, intron 4 of 4) 23248 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 408-266 chr5 68642311 68642640 + 2 NA Intergenic Intergenic 349898 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 611-82 chr2 185015222 185015735 + 2 NA Intergenic Intergenic 151594 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 189-212 chr8 113726202 113726360 + 2 NA Intergenic Intergenic -289342 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 375-138 chr15 34137280 34137618 + 2 NA Intergenic Intergenic 35366 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 324-546 chr8 122722799 122723001 + 2 NA Intergenic Intergenic -28794 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 376-363 chr7 9678789 9679018 + 2 NA Intergenic MER33|DNA|hAT-Charlie 44633 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 192-149 chr4 92652864 92652979 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 348522 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 249-137 chr16 17443498 17443708 + 2 NA intron (NM_022166, intron 1 of 11) THE1D|LTR|ERVL-MaLR 27357 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 420-126 chr2 22740094 22740387 + 2 NA Intergenic L1MD2|LINE|L1 203761 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 406-79 chr14 61225106 61225350 + 2 NA Intergenic Intergenic 56110 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 568-134 chr3 82422452 82422903 + 2 NA intron (NR_147146, intron 4 of 8) AluSz|SINE|Alu 436535 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 258-341 chr6 45090850 45091081 + 2 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 106805 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 332-524 chr8 78778253 78778435 + 2 NA intron (NM_001199886, intron 2 of 4) intron (NM_001199886, intron 2 of 4) 27119 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 429-306 chr8 118308228 118308594 + 2 NA intron (NM_001101676, intron 4 of 4) MIR|SINE|MIR -196592 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 128-83 chr9 12194325 12194430 + 2 NA Intergenic Intergenic -499008 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 227-167 chr2 64814068 64814219 + 2 NA Intergenic Intergenic 49488 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 284-405 chr8 84121269 84121437 + 2 NA Intergenic LTR79|LTR|ERVL -61434 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 234-205 chr2 227127121 227127300 + 2 NA intron (NM_000092, intron 4 of 47) intron (NM_000092, intron 4 of 47) 37349 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 433-194 chr4 32863920 32864245 + 2 NA Intergenic Intergenic 513044 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 339-59 chr10 33832609 33832849 + 2 NA Intergenic Intergenic -60049 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 321-460 chr5 56079603 56079862 + 2 NA Intergenic Intergenic 84565 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 576-30 chr12 16870817 16871224 + 2 NA Intergenic Intergenic -117727 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 413-273 chr7 4292472 4292695 + 2 NA Intergenic Intergenic -157746 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 257-311 chr5 7600875 7601042 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 204820 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 236-278 chr5 18110228 18110376 + 2 NA Intergenic Intergenic 303028 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 262-64 chr10 108229277 108229447 + 2 NA Intergenic Intergenic -160069 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 288-467 chr9 24359246 24359437 + 2 NA Intergenic Intergenic 186335 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 193-93 chr2 12197938 12198100 + 2 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) -1111 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 416-294 chr6 75584866 75585132 + 2 NA Intergenic MER83|LTR|ERV1 -16510 NM_001304792 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 925-12 chr14 49379797 49380475 + 2 NA Intergenic Intergenic 206244 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 356-332 chr3 102391253 102391542 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -43618 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 248-4 chr1 40461956 40462138 + 2 NA intron (NM_001369565, intron 5 of 5) AluJo|SINE|Alu 11571 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 437-301 chrX 75790446 75790733 + 2 NA Intergenic L1ME3A|LINE|L1 -5335 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 170-11 chr1 184969182 184969334 + 2 NA intron (NM_052966, intron 1 of 13) intron (NM_052966, intron 1 of 13) 5250 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 208-154 chr22 27136475 27136633 + 2 NA Intergenic Intergenic -50962 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 380-88 chr12 18279280 18279527 + 2 NA intron (NM_001288774, intron 1 of 32) intron (NM_001288774, intron 1 of 32) 17863 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 421-60 chr13 20631865 20632131 + 2 NA intron (NR_148465, intron 15 of 20) AluJb|SINE|Alu 64841 NM_001353572 8100 Hs.187376 NM_006531 ENSG00000032742 IFT88 D13S1056E|DAF19|TG737|TTC10|hTg737 intraflagellar transport 88 protein-coding 606-46 chr13 96865875 96866313 + 2 NA Intergenic Intergenic 118078 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 303-105 chr13 50478361 50478584 + 2 NA intron (NR_109974, intron 4 of 6) intron (NR_109974, intron 4 of 6) 48977 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 333-246 chr2 79268243 79268454 + 2 NA Intergenic MER21B|LTR|ERVL -108595 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 398-376 chr9 24868598 24868936 + 2 NA Intergenic L1M5|LINE|L1 -322870 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 315-508 chr9 28377779 28378031 + 2 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 341400 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 622-54 chr2 35009325 35009795 + 2 NA Intergenic Intergenic 332003 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 331-176 chr15 91964056 91964317 + 2 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 109882 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 337-184 chr15 93142428 93142634 + 2 NA Intergenic Intergenic -53320 NM_020211 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 343-363 chr3 157331288 157331569 + 2 NA intron (NM_024621, intron 9 of 13) intron (NM_024621, intron 9 of 13) -105422 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 639 chr1 40330994 40331455 + 2 NA Intergenic L1MD2|LINE|L1 -13938 NM_001852 1298 Hs.418012 NM_001852 ENSG00000049089 COL9A2 DJ39G22.4|EDM2|MED|STL5 collagen type IX alpha 2 chain protein-coding 191-165 chr5 23629522 23629631 + 2 NA Intergenic MER34A|LTR|ERV1 121921 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 412-27 chr10 46533749 46534076 + 2 NA Intergenic L1PB4|LINE|L1 22159 NM_014696 9721 Hs.523375 NM_014696 ENSG00000204175 GPRIN2 GRIN2|KIAA0514 G protein regulated inducer of neurite outgrowth 2 protein-coding 487-54 chr11 36666408 36666763 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -68306 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 343-475 chr6 84955042 84955340 + 2 NA Intergenic Intergenic -190593 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 307-515 chr9 72624260 72624522 + 2 NA intron (NM_138691, intron 3 of 23) ERVL-E-int|LTR|ERVL 102590 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 347-20 chr1 147412716 147412983 + 2 NA intron (NR_038423, intron 3 of 3) L1MEc|LINE|L1 105026 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 329-45 chr10 22098341 22098547 + 2 NA Intergenic Intergenic -94714 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 459-306 chr8 124868672 124869061 + 2 NA Intergenic L1MB7|LINE|L1 -46808 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 227-160 chr2 37407852 37408020 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie 63306 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 427-38 chr11 59424744 59425019 + 2 NA Intergenic Intergenic -1928 NM_001001954 219981 Hs.553648 NM_001001954 ENSG00000172324 OR5A2 - olfactory receptor family 5 subfamily A member 2 protein-coding 226-95 chr14 64087169 64087373 + 2 NA intron (NM_015180, intron 57 of 114) intron (NM_015180, intron 57 of 114) 7854 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 654-79 chr3 50755228 50755738 + 2 NA intron (NM_004947, intron 1 of 52) Cheshire|DNA|hAT-Charlie 80403 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 510-262 chr7 71339975 71340431 + 2 NA intron (NM_022479, intron 2 of 10) HAL1|LINE|L1 -32433 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 393-211 chr3 13607307 13607599 + 2 NA intron (NM_001004019, intron 2 of 17) Tigger2|DNA|TcMar-Tigger -10928 NR_132775 106635526 NR_132775 SNORA93 - small nucleolar RNA, H/ACA box 93 snoRNA 205-68 chr12 77595493 77595679 + 2 NA Intergenic L1MA9|LINE|L1 -235308 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 434-317 chr9 81493854 81494171 + 2 NA Intergenic MIRb|SINE|MIR 195523 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 262-31 chr1 237070124 237070348 + 2 NA intron (NM_001035, intron 1 of 104) AluJb|SINE|Alu 28052 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 370-213 chr2 12045136 12045464 + 2 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 38184 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 440-107 chr19 32282447 32282879 + 2 NA Intergenic L1PB3|LINE|L1 -62947 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 268-47 chr10 48976463 48976675 + 2 NA intron (NM_020945, intron 58 of 61) intron (NM_020945, intron 58 of 61) 9018 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 500-47 chr11 29138799 29139120 + 2 NA Intergenic L1MC3|LINE|L1 -455454 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 475-2 chr1 22037052 22037499 + 2 NA Intergenic AluSx1|SINE|Alu -11227 NR_110692 101928043 Hs.617422 NR_110692 ENSG00000228397 LINC01635 - long intergenic non-protein coding RNA 1635 ncRNA 556-70 chr15 52296075 52296624 + 2 NA promoter-TSS (NM_018728) promoter-TSS (NM_018728) -545 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 267-250 chr3 35918971 35919175 + 2 NA Intergenic L1PA16|LINE|L1 174597 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 339-439 chr5 14954052 14954351 + 2 NA Intergenic Intergenic -82423 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 489-50 chr12 33256321 33256730 + 2 NA Intergenic Intergenic 183294 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 624-34 chr13 77675549 77675887 + 2 NA Intergenic Intergenic -12915 NM_001310140 100129307 NM_001310140 LOC100129307 - putative UPF0607 protein ENSP00000383144 protein-coding 246-398 chr8 84759641 84759829 + 2 NA intron (NM_001287244, intron 1 of 7) MIRb|SINE|MIR 53808 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 356-466 chr8 9372492 9372816 + 2 NA Intergenic Intergenic 47603 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 471-190 chr4 60709378 60709799 + 2 NA Intergenic Intergenic -213031 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 349-18 chr1 88619061 88619355 + 2 NA intron (NR_110682, intron 1 of 3) THE1D-int|LTR|ERVL-MaLR -64936 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 335-444 chr5 151643727 151643984 + 2 NA Intergenic L1MB2|LINE|L1 -33090 NR_109873 101927096 Hs.571023 NR_109873 ENSG00000249035 CLMAT3 CTB-113P19.1|SPARC-AS1 colorectal liver metastasis associated transcript 3 ncRNA 360-311 chr3 108811166 108811450 + 2 NA Intergenic AluJr|SINE|Alu -11478 NM_001317747 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 241-118 chr14 78656358 78656541 + 2 NA intron (NR_073547, intron 6 of 20) L2c|LINE|L2 252730 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 446-111 chr15 84921277 84921627 + 2 NA intron (NM_001287761, intron 10 of 14) MIRc|SINE|MIR 36790 NM_001321722 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 219-82 chr12 129742444 129742640 + 2 NA intron (NM_133448, intron 1 of 8) MSTB|LTR|ERVL-MaLR 161483 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 284-387 chr7 101582037 101582240 + 2 NA Intergenic MER74A|LTR|ERVL -13132 NR_103747 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 445-53 chr12 115746533 115746768 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 402004 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 299-200 chr2 52630016 52630178 + 2 NA Intergenic Intergenic 72518 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 506-18 chr1 171216822 171217199 + 2 NA Intergenic MER61-int|LTR|ERV1 -31461 NM_001282694 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 134-5 chr1 119974067 119974164 + 2 NA intron (NM_001200001, intron 5 of 21) intron (NM_001200001, intron 5 of 21) -77600 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 138-104 chrX 51658210 51658298 + 2 NA Intergenic LTR53|LTR|ERVL 24577 NM_001355278 441495 Hs.187774 NM_001355278 ENSG00000283093 CENPVL2 CENPVP2 centromere protein V like 2 protein-coding 256-456 chr9 105903998 105904202 + 2 NA Intergenic Intergenic 209559 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 417-47 chr11 58917791 58918137 + 2 NA intron (NM_001354699, intron 2 of 7) LTR76|LTR|ERV1 -9665 NM_001220494 92292 Hs.38085 NM_080661 ENSG00000166840 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase like 1 protein-coding 475-55 chr12 16441426 16441738 + 2 NA Intergenic L1MC1|LINE|L1 88165 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 659-58 chr2 193292561 193293147 + 2 NA Intergenic L1ME2z|LINE|L1 543009 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 312-505 chr8 6354665 6354918 + 2 NA Intergenic L1MDa|LINE|L1 51757 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 413-261 chr6 44817706 44818070 + 2 NA intron (NR_146632, intron 11 of 11) L1ME1|LINE|L1 -266007 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 505-91 chr14 86520356 86520722 + 2 NA Intergenic AluSx|SINE|Alu -385239 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 289-319 chr3 153418567 153418738 + 2 NA intron (NR_146713, intron 5 of 6) L1PA14|LINE|L1 -65843 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 195-137 chr3 1812423 1812590 + 2 NA Intergenic Intergenic -286297 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 852-3 chr1 110366681 110367469 + 2 NA intron (NM_001201548, intron 6 of 6) intron (NM_001201548, intron 6 of 6) 23951 NM_001201549 9122 Hs.351306 NM_004696 ENSG00000168679 SLC16A4 MCT4|MCT5 solute carrier family 16 member 4 protein-coding 331-113 chr12 29908310 29908634 + 2 NA Intergenic Intergenic -123713 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 146-55 chr3 55841519 55841656 + 2 NA intron (NR_132749, intron 13 of 17) MIR|SINE|MIR 11007 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 133-46 chr3 2841273 2841362 + 2 NA intron (NM_175607, intron 7 of 24) intron (NM_175607, intron 7 of 24) -50898 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 390-428 chr9 124604909 124605156 + 2 NA intron (NM_033334, intron 2 of 9) L1MC5|LINE|L1 -53404 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 494-238 chr5 148057607 148057973 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -6182 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 404-328 chr8 122000158 122000487 + 2 NA Intergenic Intergenic -358882 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 249-249 chr22 46948215 46948395 + 2 NA intron (NR_104292, intron 10 of 13) intron (NR_104292, intron 10 of 13) -32263 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 702-30 chr16 9906664 9907159 + 2 NA intron (NM_001134408, intron 3 of 13) AluJb|SINE|Alu 275156 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 370-338 chr4 44262969 44263186 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 185732 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 306-524 chr8 127348320 127348549 + 2 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -51965 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 217-19 chr1 178651705 178651837 + 2 NA Intergenic Intergenic -25978 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 362-422 chr8 18319208 18319537 + 2 NA Intergenic Intergenic -71910 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 140-37 chr2 34294790 34294896 + 2 NA intron (NR_126403, intron 5 of 5) L2a|LINE|L2 227617 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 370-409 chr7 10620630 10620845 + 2 NA intron (NR_147499, intron 1 of 2) MER5B|DNA|hAT-Charlie -81939 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 509-74 chr14 75614031 75614435 + 2 NA intron (NM_001195283, intron 1 of 9) intron (NM_001195283, intron 1 of 9) 8693 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 304-230 chr19 57107789 57107957 + 2 NA Intergenic L1M4|LINE|L1 -12268 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 189-156 chr5 29825666 29825848 + 2 NA Intergenic Intergenic -54803 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 392-245 chr5 22531298 22531559 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) -317578 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 192-132 chr3 82947400 82947571 + 2 NA Intergenic AluJb|SINE|Alu 961343 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 522-170 chr3 27238253 27238650 + 2 NA intron (NM_199347, intron 24 of 24) intron (NM_199347, intron 24 of 24) -21928 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 376-46 chr10 49016730 49017066 + 2 NA 3' UTR (NM_001031746, exon 8 of 8) 3' UTR (NM_001031746, exon 8 of 8) -31311 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 230-240 chr3 139493089 139493264 + 2 NA intron (NR_121609, intron 3 of 4) L1M5|LINE|L1 -16660 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 322-364 chr4 35319965 35320202 + 2 NA Intergenic L1ME2z|LINE|L1 923856 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 684-44 chr17 55884166 55884738 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 133347 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 318-253 chr2 34366803 34366981 + 2 NA Intergenic Intergenic 299666 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 247-367 chr6 140328669 140328824 + 2 NA Intergenic MER52-int|LTR|ERV1 123494 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 527-12 chr1 209266058 209266508 + 2 NA Intergenic MIR3|SINE|MIR -59173 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 419-92 chr14 59807178 59807473 + 2 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 63451 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 225-353 chr8 77116822 77117001 + 2 NA Intergenic Intergenic -115867 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 458-28 chr10 98572743 98573033 + 2 NA intron (NM_021828, intron 9 of 11) L2b|LINE|L2 -125925 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 347-480 chr7 104387466 104387786 + 2 NA intron (NM_199000, intron 1 of 2) L1MB7|LINE|L1 58970 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 288-161 chr18 62431439 62431613 + 2 NA Intergenic Intergenic -91499 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 294-68 chr11 100506466 100506632 + 2 NA Intergenic Intergenic -180739 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 683-40 chr2 155852284 155852848 + 2 NA Intergenic Intergenic 402365 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 237-287 chr5 20111004 20111179 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -122891 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 614-70 chr20 48011878 48012267 + 2 NA Intergenic Intergenic -21955 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 668-89 chr6 74760195 74760793 + 2 NA Intergenic Intergenic 368288 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 153-23 chr12 7661549 7661632 + 2 NA intron (NM_001304566, intron 2 of 5) intron (NM_001304566, intron 2 of 5) 4318 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 544-115 chr2 76063145 76063529 + 2 NA Intergenic Intergenic -352422 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 331-60 chr10 80615491 80615810 + 2 NA intron (NM_207372, intron 6 of 6) intron (NM_207372, intron 6 of 6) -34147 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 550-88 chr17 72373792 72374295 + 2 NA Intergenic Intergenic 31232 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 425-46 chr10 122093262 122093650 + 2 NA intron (NM_001291877, intron 5 of 19) intron (NM_001291877, intron 5 of 19) -19429 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 347-119 chr14 31550769 31550990 + 2 NA Intergenic Intergenic -10525 NR_120408 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 337-459 chr5 111395516 111395834 + 2 NA intron (NM_001744, intron 5 of 10) intron (NM_001744, intron 5 of 10) -116551 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 251-26 chr10 12685975 12686162 + 2 NA intron (NM_001351032, intron 5 of 11) intron (NM_001351032, intron 5 of 11) -32871 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 370-54 chr10 75769282 75769490 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -13375 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 278-316 chr4 83519426 83519595 + 2 NA Intergenic Intergenic -16404 NM_001256422 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 646-79 chr22 28282413 28282826 + 2 NA intron (NM_001145418, intron 5 of 22) MIRb|SINE|MIR -177250 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 484-239 chr6 121574795 121575130 + 2 NA Intergenic Intergenic 139316 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 566-175 chr7 18425091 18425609 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -70360 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 252-291 chr4 41080418 41080644 + 2 NA intron (NM_173075, intron 3 of 16) intron (NM_173075, intron 3 of 16) 134011 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 405-127 chr2 9887274 9887660 + 2 NA intron (NM_001318977, intron 7 of 13) L1MEc|LINE|L1 43993 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 659-103 chr7 37779958 37780570 + 2 NA Intergenic L1MA3|LINE|L1 -68333 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 562-157 chr4 38304132 38304532 + 2 NA Intergenic L1MA9|LINE|L1 -62582 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 469-300 chr9 113846194 113846537 + 2 NA Intergenic L1MC|LINE|L1 -29917 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 372-448 chr7 1327695 1328057 + 2 NA Intergenic LTR2C|LTR|ERV1 95004 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 234-352 chr7 10612747 10612952 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -89827 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 324-43 chr1 239263942 239264192 + 2 NA Intergenic Intergenic -122501 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 272-308 chr4 66994354 66994502 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 427572 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 829-39 chr7 52546721 52547337 + 2 NA Intergenic L1MDa|LINE|L1 -488604 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 284-171 chr18 9104829 9105096 + 2 NA intron (NM_021074, intron 1 of 7) L1ME4a|LINE|L1 2263 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 162-35 chr14 62349773 62349927 + 2 NA Intergenic L1MC3|LINE|L1 -209877 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 495-195 chr5 30499935 30500300 + 2 NA Intergenic Intergenic 619557 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 336-465 chr5 114719121 114719418 + 2 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 54144 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 325-100 chr11 38253617 38253865 + 2 NA Intergenic MLT2B1|LTR|ERVL 315140 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 229-265 chr3 164100231 164100415 + 2 NA Intergenic MLT2B3|LTR|ERVL 71233 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 318-91 chr11 5410895 5411145 + 2 NA intron (NM_001005567, intron 1 of 4) Tigger3b|DNA|TcMar-Tigger 8623 NM_001348224 79470 NM_001348224 OR51J1 HOR5'Beta8|OR51J1P|OR51J2 olfactory receptor family 51 subfamily J member 1 (gene/pseudogene) protein-coding 412-349 chr9 120008696 120008981 + 2 NA Intergenic MIRb|SINE|MIR 73778 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 426-311 chr9 79284702 79285005 + 2 NA Intergenic Intergenic -139187 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 162-80 chr3 27745554 27745682 + 2 NA Intergenic Intergenic -22903 NM_001278183 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 371-398 chr8 135444680 135444919 + 2 NA Intergenic L2|LINE|L2 -12657 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 309-452 chr5 110222100 110222311 + 2 NA Intergenic L1M2c|LINE|L1 291710 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 812-28 chr19 29542770 29543359 + 2 NA intron (NM_001146339, intron 4 of 4) intron (NM_001146339, intron 4 of 4) 16480 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 324-499 chr7 63973589 63973894 + 2 NA Intergenic MIR|SINE|MIR -25065 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 144-61 chr3 121565174 121565305 + 2 NA Intergenic Intergenic -2710 NM_001012659 503582 Hs.224976 NM_001012659 ENSG00000186103 ARGFX - arginine-fifty homeobox protein-coding 259-346 chr6 66644203 66644400 + 2 NA Intergenic L1M3e|LINE|L1 856422 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 207-321 chrX 125417113 125417276 + 2 NA Intergenic Intergenic 97323 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 357-304 chr4 31128316 31128507 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -42733 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 319-538 chr8 100622809 100622986 + 2 NA intron (NM_152628, intron 4 of 13) intron (NM_152628, intron 4 of 13) -4492 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 320-212 chr17 67539877 67540067 + 2 NA intron (NM_181671, intron 2 of 9) L1ME3Cz|LINE|L1 -68387 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 237-152 chr19 34042347 34042465 + 2 NA Intergenic AluJr|SINE|Alu -130098 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 147-38 chr19 51072530 51072643 + 2 NA Intergenic Intergenic -7494 NM_001348178 26085 Hs.165296 NM_015596 ENSG00000167759 KLK13 KLK-L4|KLKL4 kallikrein related peptidase 13 protein-coding 591-158 chr7 109941297 109941804 + 2 NA Intergenic Intergenic 18663 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 355-100 chr11 92676726 92676984 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 238773 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 443-245 chr5 66842684 66843049 + 2 NA intron (NM_015183, intron 1 of 27) intron (NM_015183, intron 1 of 27) 14093 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 704-57 chr3 186993695 186994321 + 2 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -27847 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 161-21 chr12 14969858 14969988 + 2 NA Intergenic L1MD2|LINE|L1 -3119 NM_006205 5149 Hs.54471 NM_006205 ENSG00000139053 PDE6H ACHM6|RCD3 phosphodiesterase 6H protein-coding 391-168 chr2 57799058 57799356 + 2 NA Intergenic L1ME1|LINE|L1 -108444 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 454-34 chr10 91982764 91983140 + 2 NA intron (NM_003972, intron 18 of 37) intron (NM_003972, intron 18 of 37) 59182 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 382-419 chr8 120668828 120669122 + 2 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -92278 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 310-402 chr5 58565310 58565487 + 2 NA Intergenic Intergenic -7155 NR_109904 101928600 Hs.694699 NR_109904 ENSG00000250127 LINC02108 - long intergenic non-protein coding RNA 2108 ncRNA 336-144 chr12 129198581 129198810 + 2 NA intron (NM_133448, intron 5 of 8) L1MA7|LINE|L1 -9906 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 195-88 chr18 5927857 5928009 + 2 NA Intergenic L1MEi|LINE|L1 -31979 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 328-203 chr17 7974336 7974586 + 2 NA Intergenic L1MC5a|LINE|L1 -28209 NM_000180 3000 Hs.592109 NM_000180 ENSG00000132518 GUCY2D CACD1|CORD5|CORD6|CYGD|GUC1A4|GUC2D|LCA|LCA1|RCD2|RETGC-1|ROS-GC1|ROSGC|retGC guanylate cyclase 2D, retinal protein-coding 235-140 chr17 70217989 70218163 + 2 NA Intergenic Intergenic 48541 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 217-157 chr18 1938349 1938488 + 2 NA Intergenic L1M5|LINE|L1 -578789 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 412-190 chr21 17945555 17945827 + 2 NA intron (NM_001204177, intron 1 of 4) L1M3b|LINE|L1 28351 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 324-8 chr1 40487415 40487707 + 2 NA intron (NM_001320178, intron 3 of 5) Tigger2b_Pri|DNA|TcMar-Tigger 10271 NM_198494 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 331-133 chr13 39352664 39352858 + 2 NA intron (NM_005780, intron 3 of 3) intron (NM_005780, intron 3 of 3) 250432 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 283-25 chr1 173240725 173240961 + 2 NA intron (NR_037845, intron 2 of 2) L1ME5|LINE|L1 -33512 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 345-468 chr6 81440589 81440837 + 2 NA Intergenic L1MA4A|LINE|L1 311968 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 154-30 chr14 36775197 36775347 + 2 NA intron (NM_001171170, intron 3 of 10) intron (NM_001171170, intron 3 of 10) 117704 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 418-95 chr17 54637560 54637957 + 2 NA Intergenic L1M1|LINE|L1 -262933 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 505-314 chr8 126220483 126220928 + 2 NA Intergenic MER41-int|LTR|ERV1 -104790 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 450-188 chr3 20688861 20689200 + 2 NA Intergenic Intergenic 346562 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 282-501 chrX 98341183 98341386 + 2 NA Intergenic L1MA4A|LINE|L1 -776749 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 243-37 chr10 35817694 35817932 + 2 NA Intergenic Intergenic 39511 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 188-59 chr15 27689461 27689580 + 2 NA Intergenic Intergenic 409795 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 402-271 chr5 68575177 68575470 + 2 NA Intergenic AluJb|SINE|Alu 282746 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 200-24 chr1 235579280 235579423 + 2 NA intron (NM_004485, intron 2 of 2) MSTA|LTR|ERVL-MaLR 70433 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 366-272 chr3 34711327 34711634 + 2 NA Intergenic Intergenic 682543 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 247-235 chr20 43349682 43349868 + 2 NA Intergenic Intergenic -108121 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 620-55 chr19 10044424 10044936 + 2 NA intron (NR_027300, intron 6 of 29) MLT1J|LTR|ERVL-MaLR 3324 NR_027300 388503 Hs.655363 NM_001013640 ENSG00000167798 C3P1 CPLP complement component 3 precursor pseudogene pseudo 155-58 chr2 229192418 229192535 + 2 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 39616 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 161-102 chr7 17273209 17273309 + 2 NA Intergenic MIRc|SINE|MIR -25393 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 249-82 chr11 115949814 115949974 + 2 NA Intergenic Intergenic -189694 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 286-129 chr14 84105877 84106075 + 2 NA Intergenic MER4D1|LTR|ERV1 -1165956 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 418-175 chr3 189078854 189079226 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -92931 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 280-152 chr16 65914115 65914339 + 2 NA Intergenic L1MB8|LINE|L1 -337927 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 214-334 chr8 117951470 117951625 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -30634 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 336-324 chr20 42847617 42847816 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -121027 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 178-10 chr1 190333464 190333595 + 2 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 142481 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 544-198 chr6 97136533 97136877 + 2 NA intron (NR_136579, intron 7 of 7) intron (NR_136579, intron 7 of 7) 126629 NM_001323263 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 118-64 chr8 130274124 130274214 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 22364 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 129-11 chr12 6378138 6378260 + 2 NA promoter-TSS (NM_001159575) promoter-TSS (NM_001159575) -842 NM_001159575 6337 Hs.591047 NM_001038 ENSG00000111319 SCNN1A BESC2|ENaCa|ENaCalpha|LIDLS3|SCNEA|SCNN1 sodium channel epithelial 1 alpha subunit protein-coding 355-361 chr4 47159553 47159752 + 2 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 128085 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 323-320 chr3 21622112 21622363 + 2 NA intron (NM_024697, intron 2 of 7) intron (NM_024697, intron 2 of 7) 79448 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 1426-2 chr2 105340524 105341707 + 2 NA intron (NM_001286537, intron 2 of 4) intron (NM_001286537, intron 2 of 4) 3575 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 346-520 chr9 35433087 35433359 + 2 NA intron (NR_003582, intron 2 of 10) L2b|LINE|L2 26468 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 516-132 chr2 123266270 123266609 + 2 NA Intergenic Intergenic -192958 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 327-465 chr7 86370766 86370977 + 2 NA Intergenic L1M2|LINE|L1 -273038 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 295-302 chr3 110574595 110574793 + 2 NA Intergenic Intergenic 495265 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 550-93 chr18 7729779 7730316 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 162731 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 482-165 chr3 89387355 89387722 + 2 NA intron (NM_182644, intron 5 of 6) THE1C|LTR|ERVL-MaLR 279917 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 267-277 chr3 183500740 183500944 + 2 NA intron (NM_130446, intron 3 of 6) intron (NM_130446, intron 3 of 6) 47028 NR_145763 109617007 NR_145763 ENSG00000199363 SNORA63E - small nucleolar RNA, H/ACA box 63E snoRNA 292-105 chr12 61073364 61073649 + 2 NA Intergenic L1MDa|LINE|L1 1119333 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 627-45 chr18 69053756 69054333 + 2 NA exon (NM_024781, exon 8 of 8) exon (NM_024781, exon 8 of 8) 255964 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 554-71 chr14 59592164 59592584 + 2 NA Intergenic Intergenic -15562 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 474-18 chr1 185373177 185373521 + 2 NA Intergenic Intergenic -38310 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 434-196 chr3 145583096 145583451 + 2 NA Intergenic L1ME3B|LINE|L1 485912 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 199-42 chr11 96530857 96531029 + 2 NA Intergenic L1PA13|LINE|L1 22518 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 378-75 chr11 31584087 31584427 + 2 NA intron (NM_001288725, intron 3 of 10) intron (NM_001288725, intron 3 of 10) 74490 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 246-436 chr9 96828922 96829134 + 2 NA intron (NM_001346995, intron 2 of 3) L1MEc|LINE|L1 25486 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 312-212 chr18 72586677 72586935 + 2 NA Intergenic Intergenic -42464 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 264-229 chr2 212866615 212866819 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -59540 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 268-154 chr17 68371535 68371770 + 2 NA intron (NM_001352899, intron 8 of 12) L1ME3G|LINE|L1 -41971 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 271-202 chr2 81486116 81486326 + 2 NA Intergenic L1ME3G|LINE|L1 -19275 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 220-292 chr5 92873518 92873709 + 2 NA Intergenic L1M1|LINE|L1 697730 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 281-127 chr14 85100789 85101032 + 2 NA Intergenic L1ME2|LINE|L1 -171022 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 209-103 chr15 39565914 39566086 + 2 NA Intergenic Intergenic -15079 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 385-143 chr18 12615828 12616060 + 2 NA intron (NM_020148, intron 2 of 15) intron (NM_020148, intron 2 of 15) 40788 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 307-218 chr19 46306897 46307100 + 2 NA intron (NM_152795, intron 3 of 14) intron (NM_152795, intron 3 of 14) 3379 NM_152794 64344 Hs.420830 NM_022462 ENSG00000124440 HIF3A HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17 hypoxia inducible factor 3 subunit alpha protein-coding 134-13 chr10 74157427 74157541 + 2 NA intron (NM_001369123, intron 1 of 9) L1MEi|LINE|L1 6263 NM_001369123 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 426-59 chr12 25401951 25402310 + 2 NA Intergenic HAL1|LINE|L1 151153 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 331-319 chr20 52484701 52484947 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger -136014 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 152-92 chr8 106668426 106668563 + 2 NA intron (NM_181354, intron 1 of 13) MLT1I|LTR|ERVL-MaLR 10686 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 467-146 chr2 221176353 221176680 + 2 NA Intergenic Intergenic 395788 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 384-118 chr15 42555313 42555630 + 2 NA intron (NM_001130447, intron 1 of 4) intron (NM_001130447, intron 1 of 4) 6633 NM_001323632 55142 Hs.14347 NM_018097 ENSG00000137814 HAUS2 C15orf25|CEP27|HsT17025 HAUS augmin like complex subunit 2 protein-coding 259-41 chr10 35766259 35766456 + 2 NA Intergenic L1ME3Cz|LINE|L1 -11945 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 443-109 chr15 81904683 81905029 + 2 NA Intergenic L1M2|LINE|L1 141162 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 472-23 chr1 218605022 218605380 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 95106 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 362-461 chr9 81258503 81258847 + 2 NA Intergenic MIRb|SINE|MIR 430860 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 664-63 chr20 2223667 2224280 + 2 NA Intergenic MER41B|LTR|ERV1 17045 NR_161305 388780 Hs.132163 NR_161305 LOC388780 - uncharacterized LOC388780 ncRNA 284-146 chr16 20786747 20786928 + 2 NA TTS (NM_202000) TTS (NM_202000) 19635 NM_001142725 112479 Hs.248437 NM_080663 ENSG00000196678 ERI2 EXOD1|ZGRF5 ERI1 exoribonuclease family member 2 protein-coding 423-118 chr19 52276029 52276353 + 2 NA intron (NM_001010851, intron 1 of 3) Tigger3|DNA|TcMar-Tigger -5606 NR_030373 693228 NR_030373 ENSG00000208002 MIR643 MIRN643|hsa-mir-643|mir-643 microRNA 643 ncRNA 397-284 chr6 124706589 124706896 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -255803 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 205-212 chr4 147059463 147059638 + 2 NA Intergenic Intergenic -113664 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 321-496 chr6 61200001 61200315 + 2 NA Intergenic MER52-int|LTR|ERV1 -373972 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 388-26 chr1 195147915 195148272 + 2 NA Intergenic Intergenic 940622 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 344-395 chr5 119149801 119150049 + 2 NA exon (NM_001290322, exon 18 of 43) exon (NM_001290322, exon 18 of 43) -4712 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 550-205 chr6 146403900 146404427 + 2 NA intron (NM_001278067, intron 7 of 7) intron (NM_001278067, intron 7 of 7) -139670 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 194-26 chr10 103163487 103163634 + 2 NA intron (NM_001351187, intron 3 of 21) L1ME1|LINE|L1 -9739 NM_001351193 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 327-224 chr19 32194317 32194540 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -88512 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 233-258 chr4 52870709 52870878 + 2 NA Intergenic Intergenic 8476 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 238-419 chr9 86309773 86309948 + 2 NA intron (NM_001185059, intron 19 of 26) intron (NM_001185059, intron 19 of 26) -27322 NM_030940 81689 Hs.449291 NM_030940 ENSG00000135070 ISCA1 HBLD2|ISA1|MMDS5|hIscA iron-sulfur cluster assembly 1 protein-coding 409-219 chr4 54919778 54920168 + 2 NA Intergenic AluSz|SINE|Alu 205622 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 532-164 chr3 60589289 60589626 + 2 NA intron (NM_001320900, intron 5 of 9) L1ME4b|LINE|L1 28413 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 333-247 chr2 80674215 80674407 + 2 NA Intergenic Intergenic 360932 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 374-107 chr15 27163196 27163437 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -1997 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 244-381 chr8 134561589 134561753 + 2 NA intron (NM_020863, intron 11 of 15) intron (NM_020863, intron 11 of 15) -36400 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 278-201 chr2 32973504 32973659 + 2 NA intron (NM_206943, intron 2 of 33) L1MA1|LINE|L1 26628 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 550-177 chr5 38890135 38890489 + 2 NA intron (NM_003999, intron 7 of 17) MER5A1|DNA|hAT-Charlie 44300 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 363-15 chr1 110127769 110127950 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 15416 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 464-170 chr3 124203637 124203975 + 2 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 70877 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 308-550 chrX 88346959 88347150 + 2 NA Intergenic L1PB3|LINE|L1 -400171 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 343-196 chr17 53999323 53999501 + 2 NA Intergenic LTR3|LTR|ERVK 176485 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 235-14 chr1 110709290 110709512 + 2 NA Intergenic Intergenic -34461 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 321-188 chr14 98444443 98444609 + 2 NA Intergenic LTR33A_|LTR|ERVL -267087 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 595-100 chr20 41868795 41869232 + 2 NA Intergenic L1MDa|LINE|L1 -250636 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 323-530 chr8 36156606 36156893 + 2 NA Intergenic Intergenic -446429 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 589-101 chr4 301879 302361 + 2 NA intron (NM_001137608, intron 1 of 3) LTR70|LTR|ERV1 3354 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 425-135 chr2 50017780 50018050 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -43712 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 342-110 chr12 34570450 34570695 + 2 NA Intergenic ALR/Alpha|Satellite|centr 548076 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 302-437 chr8 36589646 36589942 + 2 NA Intergenic Intergenic -194580 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 422-314 chr9 100034994 100035231 + 2 NA intron (NM_015051, intron 4 of 11) L1PA16|LINE|L1 63888 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 421-59 chr12 126429440 126429837 + 2 NA intron (NR_146291, intron 2 of 2) THE1B|LTR|ERVL-MaLR 3492 NR_146291 105370059 NR_146291 LINC02350 - long intergenic non-protein coding RNA 2350 ncRNA 508-179 chr5 3245055 3245511 + 2 NA Intergenic L1MC1|LINE|L1 67448 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 428-306 chr8 117713354 117713780 + 2 NA Intergenic Intergenic 192854 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 247-251 chr3 18383774 18383973 + 2 NA intron (NM_001131010, intron 8 of 10) intron (NM_001131010, intron 8 of 10) 41466 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 212-130 chr18 77951761 77951902 + 2 NA Intergenic CR1_Mam|LINE|CR1 41896 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 143-72 chr6 17367610 17367692 + 2 NA Intergenic L1ME1|LINE|L1 -25854 NM_001363533 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 580-83 chr2 80990121 80990662 + 2 NA Intergenic L1MA3|LINE|L1 476555 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 271-388 chr6 121846566 121846820 + 2 NA Intergenic Intergenic 411047 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 321-144 chr12 115107891 115108116 + 2 NA Intergenic MIR|SINE|MIR -423828 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 268-221 chr20 9805839 9806007 + 2 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 33153 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 554-136 chr20 59111538 59111996 + 2 NA Intergenic L1MC5a|LINE|L1 -68921 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 463-136 chr2 44308337 44308705 + 2 NA intron (NM_000341, intron 7 of 9) L1MB7|LINE|L1 33041 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 540-74 chr15 24814841 24815274 + 2 NA Intergenic L1MA7|LINE|L1 -8551 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 186-148 chr7 38863654 38863801 + 2 NA intron (NM_014396, intron 3 of 28) intron (NM_014396, intron 3 of 28) 45464 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 405-134 chr2 48834394 48834764 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -78855 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 447-65 chr13 83986793 83987074 + 2 NA Intergenic L2|LINE|L2 -104459 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 572-193 chr9 96815504 96815978 + 2 NA TTS (NM_001346991) TTS (NM_001346991) -37612 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 272-436 chr8 21716090 21716282 + 2 NA intron (NM_001495, intron 4 of 8) AluSz|SINE|Alu 72689 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 218-15 chr1 185122149 185122289 + 2 NA intron (NM_030934, intron 13 of 14) L1PA16|LINE|L1 34734 NM_030934 81627 Hs.107149 NM_030934 ENSG00000121486 TRMT1L C1orf25|MST070|MSTP070|TRM1L|bG120K12.3 tRNA methyltransferase 1 like protein-coding 329-164 chr14 62550218 62550502 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -410387 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 220-207 chr21 25426615 25426746 + 2 NA intron (NR_024027, intron 2 of 4) intron (NR_024027, intron 2 of 4) 5021 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 374-389 chr8 98630333 98630544 + 2 NA intron (NM_001256313, intron 4 of 8) AluJb|SINE|Alu 195233 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 512-225 chr5 115055422 115055733 + 2 NA Intergenic Intergenic 114331 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 268-224 chr20 42830348 42830566 + 2 NA intron (NM_133170, intron 2 of 31) L1PREC2|LINE|L1 -138286 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 281-212 chr2 80275666 80275903 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 28968 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 568-179 chr7 2024977 2025344 + 2 NA intron (NM_001013837, intron 12 of 18) L1MC2|LINE|L1 63892 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 272-353 chr5 106656459 106656705 + 2 NA Intergenic MIR|SINE|MIR 354432 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 374-194 chr2 115275024 115275256 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -34097 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 280-231 chr20 41006592 41006771 + 2 NA intron (NR_145525, intron 2 of 2) MER52A|LTR|ERV1 -22141 NM_003286 7150 Hs.472737 NM_003286 ENSG00000198900 TOP1 TOPI DNA topoisomerase I protein-coding 345-472 chr6 139600532 139600763 + 2 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -126051 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 323-432 chr5 129987437 129987692 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 83099 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 471-288 chr9 108513717 108514062 + 2 NA Intergenic Intergenic 342097 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 375-41 chr10 39282353 39282708 + 2 NA Intergenic ALR/Alpha|Satellite|centr 585934 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 502-108 chr17 32785365 32785675 + 2 NA intron (NM_015194, intron 1 of 21) L2|LINE|L2 91604 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 290-466 chr8 130536397 130536644 + 2 NA Intergenic L2c|LINE|L2 -92846 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 290-347 chr5 73077014 73077193 + 2 NA intron (NM_001146032, intron 19 of 24) intron (NM_001146032, intron 19 of 24) -43472 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 321-484 chr5 179217253 179217449 + 2 NA intron (NM_014244, intron 3 of 21) L1ME5|LINE|L1 128110 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 306-437 chr6 68832388 68832622 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 197223 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 378-203 chr19 32490208 32490483 + 2 NA Intergenic L1MEg|LINE|L1 84220 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like C-mannosyltransferase 3 protein-coding 496-54 chr12 41883535 41883996 + 2 NA Intergenic L1M5|LINE|L1 119576 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 360-488 chr9 81429786 81430111 + 2 NA Intergenic Intergenic 259587 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 471-229 chr6 70338354 70338663 + 2 NA Intergenic Intergenic -35424 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 210-262 chr7 39173714 39173887 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) 155334 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 305-464 chr6 25613794 25613993 + 2 NA intron (NM_001173977, intron 36 of 36) Chap1_Mam|DNA|hAT-Charlie -38322 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 368-247 chr2 150888064 150888416 + 2 NA Intergenic Intergenic 259343 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 360-438 chr7 89246178 89246446 + 2 NA intron (NM_181646, intron 2 of 3) L1PA16|LINE|L1 -450575 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 294-419 chr6 138196512 138196754 + 2 NA intron (NM_020340, intron 2 of 33) Tigger3b|DNA|TcMar-Tigger 21857 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 323-47 chr10 30486874 30487074 + 2 NA Intergenic Intergenic 52328 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 240-142 chr14 70632316 70632504 + 2 NA intron (NR_110071, intron 2 of 2) MIRb|SINE|MIR 8888 NR_110071 101928075 Hs.737532 NR_110071 ENSG00000245466 LOC101928075 - uncharacterized LOC101928075 ncRNA 321-301 chr2 144068563 144068811 + 2 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 131620 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 437-261 chr7 116074594 116074956 + 2 NA Intergenic L1MB8|LINE|L1 -44012 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 281-429 chr8 36834941 36835113 + 2 NA intron (NM_001031836, intron 12 of 26) intron (NM_001031836, intron 12 of 26) 50653 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 213-241 chr5 150898566 150898742 + 2 NA intron (NM_001172832, intron 2 of 4) intron (NM_001172832, intron 2 of 4) 6329 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 489-157 chr2 228205878 228206327 + 2 NA Intergenic Intergenic -24415 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 228-121 chr16 27812721 27812861 + 2 NA intron (NM_001109763, intron 5 of 6) AluSz|SINE|Alu 75366 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 417-126 chr2 13014770 13015137 + 2 NA Intergenic Intergenic -7940 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 303-481 chr8 138415701 138415944 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 81439 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 414-253 chr4 182884815 182885168 + 2 NA Intergenic Intergenic 32262 NM_001351745 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 548-72 chr14 61375545 61375861 + 2 NA intron (NM_006255, intron 1 of 13) MSTA|LTR|ERVL-MaLR 54260 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 407-81 chr14 51407346 51407591 + 2 NA Intergenic L1PREC2|LINE|L1 -10333 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 296-114 chr12 114113982 114114196 + 2 NA Intergenic Intergenic 127681 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 472-341 chr9 27492242 27492513 + 2 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -31937 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 351-252 chr2 221799017 221799215 + 2 NA Intergenic Intergenic -224914 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 810-39 chr5 16364437 16364963 + 2 NA Intergenic AluSx1|SINE|Alu 76402 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 617-59 chr2 15979998 15980537 + 2 NA Intergenic MIR|SINE|MIR -37834 NR_161163 10408 Hs.651453 NR_110230 ENSG00000233718 MYCNOS MYCN-AS1|N-CYM|NCYM|NYCM MYCN opposite strand ncRNA 300-125 chr15 23931789 23931983 + 2 NA Intergenic Intergenic -43261 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 255-166 chr18 2431836 2432020 + 2 NA Intergenic LTR33|LTR|ERVL 139577 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 542-17 chr1 244983798 244984275 + 2 NA intron (NR_026587, intron 1 of 5) FRAM|SINE|Alu -13167 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 306-317 chr3 89545546 89545808 + 2 NA Intergenic Intergenic 438056 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 329-625 chrX 101910573 101910759 + 2 NA intron (NM_001282401, intron 1 of 8) L1MA1|LINE|L1 21361 NM_001282400 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 233-72 chr12 17650559 17650738 + 2 NA Intergenic Intergenic -22651 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 479-172 chr4 153282832 153283281 + 2 NA intron (NM_001351057, intron 4 of 12) AluJo|SINE|Alu 25677 NM_001351054 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 238-99 chr14 52017591 52017797 + 2 NA intron (NM_007361, intron 14 of 21) intron (NM_007361, intron 14 of 21) 28148 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 232-153 chr19 48542656 48542859 + 2 NA Intergenic AluSz6|SINE|Alu -9415 NM_177973 6820 Hs.369331 NM_004605 ENSG00000088002 SULT2B1 ARCI14|HSST2 sulfotransferase family 2B member 1 protein-coding 264-13 chr1 121589598 121589818 + 2 NA Intergenic L1MD2|LINE|L1 70596 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 497-83 chr15 68634520 68634903 + 2 NA intron (NM_001190457, intron 1 of 11) MER5A|DNA|hAT-Charlie 2723 NM_001190457 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 371-58 chr10 123233404 123233666 + 2 NA Intergenic Intergenic 79133 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 342-63 chr10 52054850 52055085 + 2 NA intron (NM_001098512, intron 6 of 17) AluJb|SINE|Alu 259161 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 337-528 chr7 106319244 106319457 + 2 NA Intergenic Intergenic -34367 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 301-466 chr8 132442024 132442265 + 2 NA intron (NM_004519, intron 1 of 14) L1PA13|LINE|L1 5118 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 350-475 chr7 42569429 42569640 + 2 NA Intergenic L2c|LINE|L2 136913 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 199-9 chr1 105639454 105639626 + 2 NA Intergenic ERVL-int|LTR|ERVL -20605 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 451-10 chr1 163778578 163778959 + 2 NA Intergenic L1MEc|LINE|L1 -355577 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 526 chr1 14881169 14881615 + 2 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -42737 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 435-133 chr2 195915655 195915955 + 2 NA intron (NM_018897, intron 24 of 64) intron (NM_018897, intron 24 of 64) 153032 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 717-9 chr1 81335261 81335788 + 2 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 29129 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 348-470 chr6 136451036 136451245 + 2 NA intron (NM_001198617, intron 1 of 15) MER34C_|LTR|ERV1 15735 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 183-82 chr2 220364594 220364735 + 2 NA Intergenic L1ME3C|LINE|L1 -458099 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 283-275 chr22 27161509 27161739 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -25892 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 177-41 chr13 36586396 36586545 + 2 NA Intergenic L2|LINE|L2 -87550 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 291-269 chr21 20509161 20509402 + 2 NA Intergenic L3|LINE|CR1 -250596 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 270-437 chrX 29559834 29560072 + 2 NA intron (NM_014271, intron 5 of 10) L1MA9|LINE|L1 -14325 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 307-166 chr15 95276727 95276921 + 2 NA Intergenic Intergenic 50276 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 227-287 chr5 63184910 63185079 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 606175 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 335-33 chr1 223548415 223548615 + 2 NA intron (NM_001143962, intron 16 of 20) MLT1A0|LTR|ERVL-MaLR 117186 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 243-94 chr12 54248934 54249126 + 2 NA intron (NM_012117, intron 3 of 4) intron (NM_012117, intron 3 of 4) 10515 NM_001127322 23468 Hs.349283 NM_012117 ENSG00000094916 CBX5 HEL25|HP1|HP1A chromobox 5 protein-coding 300-339 chr4 134755159 134755411 + 2 NA Intergenic Intergenic 331417 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 247-73 chr11 128844671 128844835 + 2 NA intron (NM_153764, intron 1 of 1) intron (NM_153764, intron 1 of 1) -2284 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 720-41 chr19 43883083 43883448 + 2 NA Intergenic Intergenic -3129 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 687-33 chr14 31786834 31787308 + 2 NA intron (NM_001201574, intron 1 of 5) L2b|LINE|L2 72502 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 269-427 chr9 83169100 83169286 + 2 NA Intergenic L1MA4|LINE|L1 98075 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 417-227 chr5 108017553 108017955 + 2 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -346817 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 833-36 chr7 50110881 50111612 + 2 NA intron (NM_001161834, intron 2 of 8) LTR9A1|LTR|ERV1 15160 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 200-262 chr8 19565988 19566129 + 2 NA intron (NM_001354497, intron 1 of 7) intron (NM_001354497, intron 1 of 7) 36487 NM_001354499 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 248-215 chr2 223977419 223977610 + 2 NA intron (NM_001136530, intron 8 of 8) intron (NM_001136530, intron 8 of 8) 20051 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 310-54 chr10 93607835 93608044 + 2 NA Intergenic Intergenic -4598 NM_006204 5146 Hs.658121 NM_006204 ENSG00000095464 PDE6C ACHM5|COD4|PDEA2 phosphodiesterase 6C protein-coding 331-16 chr1 103322688 103322965 + 2 NA Intergenic L1MA1|LINE|L1 202685 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 246-101 chr12 131241283 131241425 + 2 NA Intergenic Intergenic 56618 NR_135045 107161159 Hs.730119 NR_135045 ENSG00000248703 LINC02415 - long intergenic non-protein coding RNA 2415 ncRNA 336-468 chr5 142395769 142395965 + 2 NA intron (NR_120664, intron 3 of 3) MLT1L|LTR|ERVL-MaLR 70574 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 252-415 chr8 50418979 50419156 + 2 NA intron (NR_135795, intron 4 of 18) L1MDa|LINE|L1 254936 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 360-337 chr4 121383987 121384236 + 2 NA Intergenic L1MD2|LINE|L1 -3093 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 686-19 chr12 32155801 32156358 + 2 NA intron (NR_148725, intron 1 of 9) intron (NR_148725, intron 1 of 9) 49232 NM_001354189 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 308-140 chr14 46661257 46661499 + 2 NA Intergenic Intergenic -9597 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 328-430 chr5 9786329 9786652 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -67887 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 308-153 chr15 23997515 23997800 + 2 NA intron (NR_126392, intron 3 of 5) LTR75_1|LTR|ERV1 22510 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 297-7 chr1 51084167 51084403 + 2 NA Intergenic L1MA8|LINE|L1 -17943 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 322-522 chr8 77577972 77578270 + 2 NA Intergenic L1MA3|LINE|L1 127424 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 570-57 chr14 37462675 37463101 + 2 NA intron (NM_138731, intron 12 of 13) THE1B-int|LTR|ERVL-MaLR 132361 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 147-20 chr14 46648217 46648323 + 2 NA Intergenic MIR|SINE|MIR 3511 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 439-267 chr7 52078629 52078871 + 2 NA Intergenic Intergenic -685494 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 390-390 chr8 111713761 111714065 + 2 NA Intergenic L1M3|LINE|L1 337274 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 476-52 chr11 82050307 82050649 + 2 NA intron (NR_120571, intron 5 of 7) L1MA1|LINE|L1 -159642 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 116-29 chr3 125181217 125181301 + 2 NA intron (NM_001195483, intron 3 of 12) L1MEa|LINE|L1 -29707 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 212-102 chr14 76891590 76891770 + 2 NA Intergenic L2a|LINE|L2 65272 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 212-254 chr5 39816166 39816347 + 2 NA Intergenic Intergenic -236035 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 272-151 chr17 57043445 57043700 + 2 NA Intergenic LTR85c|LTR|Gypsy? -1906 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 330-87 chr11 25695770 25696013 + 2 NA Intergenic L1PA15-16|LINE|L1 -493232 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 208-255 chr8 20470494 20470648 + 2 NA Intergenic Intergenic 144355 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 483-83 chr16 63913491 63913782 + 2 NA Intergenic Intergenic 1208427 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 751-55 chr5 5701602 5702163 + 2 NA Intergenic Intergenic 279205 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 358-336 chr4 76476509 76476838 + 2 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 41444 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 397-343 chr8 117319126 117319512 + 2 NA Intergenic Intergenic 184324 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 318-387 chr4 33068480 33068670 + 2 NA Intergenic Intergenic 717537 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 226-132 chr18 2323914 2324047 + 2 NA Intergenic L1MC5a|LINE|L1 247525 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 465-206 chr4 92038371 92038703 + 2 NA Intergenic LTR2|LTR|ERV1 238765 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 367-142 chr16 2806321 2806552 + 2 NA Intergenic Intergenic -9904 NR_145775 109616997 NR_145775 ENSG00000221719 SNORA3C - small nucleolar RNA, H/ACA box 3C snoRNA 176-81 chr3 1433395 1433522 + 2 NA Intergenic L1ME2|LINE|L1 340434 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 471-115 chr19 8722612 8722986 + 2 NA Intergenic AluJr|SINE|Alu -8155 NM_001004699 284383 Hs.553675 NM_001004699 ENSG00000181733 OR2Z1 OR19-4|OR2Z2 olfactory receptor family 2 subfamily Z member 1 protein-coding 494-187 chr3 139632783 139633123 + 2 NA intron (NM_001320513, intron 2 of 6) MLT1D|LTR|ERVL-MaLR 45019 NM_001320510 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 321-140 chr12 92725511 92725750 + 2 NA Intergenic Intergenic -10859 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 400-133 chr17 69340170 69340476 + 2 NA Intergenic Intergenic -13190 NM_172232 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 324-174 chr15 26456225 26456473 + 2 NA Intergenic Intergenic 172741 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 715-10 chr11 79571095 79571620 + 2 NA Intergenic Intergenic -130327 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 239-433 chr9 18868986 18869191 + 2 NA intron (NM_001040272, intron 23 of 28) MLT1C|LTR|ERVL-MaLR 164121 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 332-194 chr17 12563631 12563930 + 2 NA intron (NR_034144, intron 1 of 2) L1MD|LINE|L1 13812 NR_034145 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 340-257 chr2 76175254 76175468 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -464446 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 384-170 chr2 81391016 81391267 + 2 NA Intergenic LTR8A|LTR|ERV1 75805 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 180-78 chr2 19637678 19637799 + 2 NA Intergenic Intergenic -231116 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 402-111 chr17 39838473 39838802 + 2 NA intron (NM_012481, intron 1 of 7) L1ME2z|LINE|L1 25551 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 160-96 chr6 130359058 130359152 + 2 NA intron (NM_001258275, intron 1 of 13) MIR|SINE|MIR 6763 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 745-34 chr20 7087806 7088353 + 2 NA Intergenic L1MB5|LINE|L1 166123 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 458-59 chr13 57136998 57137423 + 2 NA Intergenic Intergenic -3708 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 330-248 chr2 3711546 3711771 + 2 NA intron (NM_001287444, intron 2 of 10) L1M5|LINE|L1 4816 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 341-167 chr15 59236828 59237070 + 2 NA intron (NM_004998, intron 4 of 27) L1ME4c|LINE|L1 30106 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 694-21 chr11 37592048 37592556 + 2 NA Intergenic Intergenic -346299 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 273-465 chr8 137638137 137638365 + 2 NA Intergenic Intergenic -224663 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 445-223 chr5 129227847 129228235 + 2 NA Intergenic L1MCa|LINE|L1 130353 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 298-503 chr9 87349128 87349350 + 2 NA Intergenic L1MA9|LINE|L1 -147989 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 290-157 chr16 59886195 59886451 + 2 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 30970 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 270-368 chr7 98648975 98649201 + 2 NA Intergenic MER41D|LTR|ERV1 31803 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 430-117 chr17 71991641 71991955 + 2 NA Intergenic AluY|SINE|Alu 34181 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 494-322 chrX 88254422 88254807 + 2 NA Intergenic L1M4b|LINE|L1 -492611 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 523-271 chr8 88147972 88148468 + 2 NA intron (NM_005941, intron 4 of 9) L1MEd|LINE|L1 179263 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 298-391 chr6 39364526 39364702 + 2 NA intron (NM_001289020, intron 15 of 21) intron (NM_001289020, intron 15 of 21) -41646 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 336-546 chr8 100585564 100585807 + 2 NA intron (NM_152628, intron 11 of 13) intron (NM_152628, intron 11 of 13) -25926 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 259-386 chr8 69276313 69276563 + 2 NA Intergenic L1MA5A|LINE|L1 171806 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 321-492 chr6 54984914 54985226 + 2 NA Intergenic L1PA14|LINE|L1 -121390 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 403-4 chr1 55412203 55412466 + 2 NA Intergenic Intergenic 186693 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 446-295 chr8 37366802 37367183 + 2 NA Intergenic Intergenic 126921 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 330-254 chr2 40907622 40907946 + 2 NA Intergenic L1M4b|LINE|L1 -395349 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 436-13 chr1 97706126 97706460 + 2 NA intron (NM_000110, intron 5 of 22) intron (NM_000110, intron 5 of 22) -90628 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 513-184 chr3 78098219 78098538 + 2 NA Intergenic Intergenic -49415 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 212-76 chr12 2278106 2278281 + 2 NA intron (NR_046769, intron 1 of 2) intron (NR_046769, intron 1 of 2) 8417 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 290-470 chr8 134447024 134447260 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -150929 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 365-96 chr12 41803354 41803568 + 2 NA Intergenic Intergenic 39272 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 265-89 chr13 55790816 55791020 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 616464 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 151-67 chr5 178999832 178999929 + 2 NA Intergenic L1ME3D|LINE|L1 -4560 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 399-180 chr20 22274194 22274401 + 2 NA Intergenic Intergenic 8504 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 306-302 chr3 26793045 26793219 + 2 NA Intergenic Intergenic 98575 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 301-226 chr2 145048857 145049095 + 2 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 381009 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 398-156 chr2 44892542 44892780 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 46227 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 252-222 chr2 198845700 198845890 + 2 NA Intergenic Intergenic -470698 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 386-388 chrX 64046605 64046830 + 2 NA Intergenic L1MA9|LINE|L1 158991 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 205-86 chr14 60587147 60587292 + 2 NA Intergenic L1MEd|LINE|L1 -51997 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 336-593 chrUn_GL000216v2 66412 66649 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 223-240 chr4 32607565 32607745 + 2 NA Intergenic L1M4|LINE|L1 256617 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 299-205 chr2 65729774 65730025 + 2 NA Intergenic L2c|LINE|L2 -297300 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 256-184 chr19 56664258 56664450 + 2 NA exon (NM_001005850, exon 2 of 2) exon (NM_001005850, exon 2 of 2) 7403 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 529-216 chr8 88999393 88999780 + 2 NA Intergenic Intergenic -672103 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 264-437 chr9 27962367 27962509 + 2 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -388572 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 141-66 chr4 36262841 36262939 + 2 NA intron (NR_122080, intron 2 of 2) intron (NR_122080, intron 2 of 2) 6372 NR_122080 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 378-336 chr5 28426918 28427110 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -139349 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 321-477 chr5 131826292 131826507 + 2 NA intron (NM_001303622, intron 11 of 12) L1MEd|LINE|L1 -29382 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 136-30 chr15 91449029 91449102 + 2 NA Intergenic Intergenic -14274 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 213-212 chr4 92290284 92290424 + 2 NA Intergenic L1MA5|LINE|L1 -13052 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 349-195 chr16 50015679 50015910 + 2 NA Intergenic L1MB3|LINE|L1 -9412 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 532-278 chr8 119332842 119333322 + 2 NA Intergenic L3|LINE|CR1 7911 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 337-27 chr1 183763793 183764010 + 2 NA intron (NM_001297669, intron 3 of 18) intron (NM_001297669, intron 3 of 18) -41219 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 432-85 chr15 25077108 25077469 + 2 NA TTS (NR_003327) TTS (NR_003327) 238 NR_003327 100033424 NR_003327 ENSG00000207197 SNORD116-12 HBII-85-12 small nucleolar RNA, C/D box 116-12 snoRNA 765-2 chr1 199268007 199268570 + 2 NA intron (NR_147896, intron 3 of 3) MLT1F2-int|LTR|ERVL-MaLR 119690 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 342-115 chr12 52942804 52943103 + 2 NA intron (NM_001256293, intron 1 of 8) intron (NM_001256293, intron 1 of 8) -5918 NM_199187 3875 Hs.406013 NM_000224 ENSG00000111057 KRT18 CK-18|CYK18|K18 keratin 18 protein-coding 185-89 chr2 16811964 16812130 + 2 NA Intergenic L1MB8|LINE|L1 -146213 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 276-6 chr1 56811586 56811846 + 2 NA intron (NM_001004303, intron 1 of 19) intron (NM_001004303, intron 1 of 19) 7688 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 506-258 chr6 154588739 154589135 + 2 NA Intergenic Intergenic -78252 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 346-112 chr12 119444176 119444424 + 2 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 109571 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 348-318 chr3 114227616 114227830 + 2 NA Intergenic Intergenic 9855 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 507-219 chr6 56084914 56085409 + 2 NA intron (NM_030820, intron 17 of 29) intron (NM_030820, intron 17 of 29) 6501 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 655-135 chr9 11311166 11311765 + 2 NA Intergenic L1M1|LINE|L1 698259 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 344-390 chr5 92321624 92321862 + 2 NA Intergenic L1MA10|LINE|L1 -938426 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 369-223 chr2 179681765 179682063 + 2 NA intron (NR_148056, intron 3 of 9) L1M5|LINE|L1 -21720 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 540-19 chr1 166567047 166567442 + 2 NA Intergenic LTR33A_|LTR|ERVL -36672 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 237-61 chr11 105855543 105855753 + 2 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 166592 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 391-193 chr2 194898945 194899240 + 2 NA Intergenic Intergenic 168497 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 157-2 chr1 40146588 40146688 + 2 NA Intergenic Intergenic -14749 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 313-537 chr8 125010965 125011148 + 2 NA intron (NM_003129, intron 6 of 10) MIR3|SINE|MIR 12551 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 382-20 chr1 191290177 191290532 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -61856 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 256-254 chr3 31162383 31162579 + 2 NA promoter-TSS (NR_130459) promoter-TSS (NR_130459) -694 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 253-405 chr8 77882837 77883000 + 2 NA Intergenic L2a|LINE|L2 432221 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 167-108 chr7 92255111 92255200 + 2 NA intron (NM_019004, intron 1 of 19) THE1B|LTR|ERVL-MaLR -9055 NM_001350672 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 267-340 chr5 96353205 96353400 + 2 NA intron (NR_130776, intron 3 of 4) L2a|LINE|L2 78857 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 269-39 chr10 21021621 21021849 + 2 NA intron (NM_001173484, intron 2 of 6) L2b|LINE|L2 -124133 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 122-17 chr14 65578035 65578128 + 2 NA intron (NM_178156, intron 2 of 9) intron (NM_178156, intron 2 of 9) 106979 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 423-80 chr14 82418847 82419108 + 2 NA Intergenic L1PA16|LINE|L1 -223655 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 589-72 chr2 114443250 114443642 + 2 NA intron (NM_001321910, intron 1 of 26) intron (NM_001321910, intron 1 of 26) 805 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 384-401 chr9 91105030 91105379 + 2 NA Intergenic Intergenic -13858 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 525-180 chr4 105846105 105846534 + 2 NA 3' UTR (NM_024751, exon 12 of 12) 3' UTR (NM_024751, exon 12 of 12) -19147 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 233-289 chr5 29915537 29915711 + 2 NA Intergenic L1PA13|LINE|L1 35064 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 455-288 chr8 134696818 134697246 + 2 NA promoter-TSS (NM_001167583) promoter-TSS (NM_001167583) -477 NM_001167583 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 546-30 chr10 124373017 124373357 + 2 NA Intergenic Intergenic 45736 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 173-81 chr20 17729934 17730035 + 2 NA intron (NM_001014977, intron 2 of 2) intron (NM_001014977, intron 2 of 2) 30036 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 286-261 chr21 31318551 31318814 + 2 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 25672 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 318-461 chr5 148842010 148842225 + 2 NA Intergenic Intergenic 15524 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 268-383 chr7 123615206 123615418 + 2 NA non-coding (NR_111922, exon 4 of 5) non-coding (NR_111922, exon 4 of 5) 6289 NM_080928 142685 Hs.83916 NM_080928 ENSG00000146809 ASB15 - ankyrin repeat and SOCS box containing 15 protein-coding 574-194 chr9 114022807 114023230 + 2 NA intron (NM_133374, intron 10 of 13) L1ME2|LINE|L1 55282 NM_001633 259 Hs.436911 NM_001633 ENSG00000106927 AMBP A1M|EDC1|HCP|HI30|IATIL|ITI|ITIL|ITILC|UTI alpha-1-microglobulin/bikunin precursor protein-coding 436-148 chr2 173538889 173539142 + 2 NA Intergenic L1MB4|LINE|L1 184143 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 262-114 chr13 113809781 113809970 + 2 NA intron (NM_182614, intron 8 of 8) intron (NM_182614, intron 8 of 8) -5735 NR_044995 650669 Hs.369201 NM_001039799 GAS6-AS1 - GAS6 antisense RNA 1 ncRNA 320-444 chr5 57013196 57013362 + 2 NA Intergenic L1MEc|LINE|L1 -61149 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 195-83 chr17 51374550 51374742 + 2 NA Intergenic Intergenic 37931 NR_122104 440446 Hs.626751 NR_122104 ENSG00000267452 LINC02072 - long intergenic non-protein coding RNA 2072 ncRNA 295-505 chr9 101420767 101421053 + 2 NA 3' UTR (NM_000035, exon 9 of 9) 3' UTR (NM_000035, exon 9 of 9) 14864 NM_000035 229 Hs.530274 NM_000035 ENSG00000136872 ALDOB ALDB|ALDO2 aldolase, fructose-bisphosphate B protein-coding 258-408 chr8 121705093 121705321 + 2 NA Intergenic L2c|LINE|L2 -63767 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 524-48 chr12 72694716 72695090 + 2 NA Intergenic Intergenic -421394 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 296-228 chr2 99536555 99536824 + 2 NA Intergenic Intergenic -46672 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 153-67 chr3 29289847 29289988 + 2 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 8605 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 355-57 chr10 76486966 76487172 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -400975 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 414-196 chr21 45936740 45937084 + 2 NA intron (NR_145492, intron 15 of 16) intron (NR_145492, intron 15 of 16) -36058 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 341-190 chr16 72053036 72053252 + 2 NA Intergenic L1MB4|LINE|L1 -1361 NM_005143 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 348-385 chr4 183070759 183071070 + 2 NA Intergenic Intergenic 28285 NR_024008 152641 Hs.745108 NM_153008 ENSG00000251359 WWC2-AS2 C4orf38 WWC2 antisense RNA 2 ncRNA 329-495 chr6 62690429 62690692 + 2 NA Intergenic Intergenic -404333 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 373-101 chr13 58665167 58665499 + 2 NA Intergenic Intergenic -432216 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 380-253 chr3 98740476 98740758 + 2 NA intron (NM_001323366, intron 1 of 11) MIRb|SINE|MIR 7161 NM_001323366 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 411-172 chr3 6906461 6906683 + 2 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -12555 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 296-62 chr10 105916701 105916968 + 2 NA Intergenic L1MB7|LINE|L1 -96501 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 275-121 chr15 71720241 71720454 + 2 NA intron (NM_001286429, intron 2 of 11) AluJb|SINE|Alu -28808 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 562-208 chr7 110099480 110099894 + 2 NA Intergenic L1PB1|LINE|L1 -139474 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 287-440 chr9 89274294 89274459 + 2 NA Intergenic AluJb|SINE|Alu -36819 NM_001827 1164 Hs.83758 NM_001827 ENSG00000123975 CKS2 CKSHS2 CDC28 protein kinase regulatory subunit 2 protein-coding 270-447 chrX 99746175 99746347 + 2 NA Intergenic L1PA16|LINE|L1 664012 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 503-188 chr3 13713617 13713938 + 2 NA intron (NR_027103, intron 2 of 5) intron (NR_027103, intron 2 of 5) 63056 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 297-448 chr7 91743542 91743743 + 2 NA Intergenic Intergenic 137060 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 292-141 chr14 67156380 67156594 + 2 NA intron (NM_001024218, intron 17 of 21) L1MEg|LINE|L1 -32953 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 353-242 chr2 49129404 49129604 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 25011 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 330-22 chr1 84016446 84016620 + 2 NA Intergenic Intergenic -17401 NM_001350214 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 203-11 chr1 104364638 104364818 + 2 NA Intergenic L1MA10|LINE|L1 291705 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 161-140 chrX 6520521 6520607 + 2 NA Intergenic Intergenic 14554 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 131-80 chr8 134060495 134060608 + 2 NA Intergenic L1MA7|LINE|L1 174055 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 256-291 chr4 74008514 74008700 + 2 NA Intergenic L1ME2|LINE|L1 -9930 NM_002994 6374 Hs.89714 NM_002994 ENSG00000163735 CXCL5 ENA-78|SCYB5 C-X-C motif chemokine ligand 5 protein-coding 293-437 chr8 86934702 86934916 + 2 NA intron (NM_173538, intron 3 of 10) L1M5|LINE|L1 68394 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 348-271 chr20 55067492 55067775 + 2 NA Intergenic L1PA10|LINE|L1 -355410 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 505-203 chr3 164040776 164041231 + 2 NA Intergenic Intergenic 130553 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 194-39 chr12 13960756 13960882 + 2 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 19537 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 412-193 chr21 31028665 31028895 + 2 NA Intergenic L1ME3C|LINE|L1 9696 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 338-193 chr16 52241695 52241872 + 2 NA Intergenic Intergenic -16781 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 185-81 chr18 6822394 6822567 + 2 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -12005 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 278-189 chr19 28713347 28713586 + 2 NA intron (NR_110759, intron 5 of 9) L1MC5a|LINE|L1 14228 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 140-63 chr6 63209107 63209235 + 2 NA Intergenic Intergenic 110806 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 381-125 chr16 72166905 72167201 + 2 NA intron (NM_031293, intron 2 of 20) intron (NM_031293, intron 2 of 20) 5102 NM_031293 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 528-138 chr2 184825699 184826187 + 2 NA intron (NM_194250, intron 1 of 3) AluSx3|SINE|Alu 227414 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 233-368 chr8 67645375 67645543 + 2 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 100901 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 709-93 chr8 125318887 125319438 + 2 NA intron (NM_001349486, intron 5 of 7) L1ME1|LINE|L1 -111196 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 629-37 chr14 46069252 46069727 + 2 NA intron (NR_102702, intron 1 of 3) MER117|DNA|hAT-Charlie 5330 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 299-328 chr4 76239229 76239413 + 2 NA intron (NM_001242936, intron 2 of 7) L1MB3|LINE|L1 -12379 NM_001242939 100631383 Hs.720509 NM_001242939 ENSG00000272414 FAM47E-STBD1 FAM47E FAM47E-STBD1 readthrough protein-coding 303-410 chr6 168303682 168303846 + 2 NA intron (NM_001286351, intron 3 of 5) intron (NM_001286351, intron 3 of 5) 16013 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 259-339 chr6 50555131 50555323 + 2 NA Intergenic Intergenic -158317 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 261-334 chr6 57213585 57213772 + 2 NA intron (NR_103822, intron 1 of 3) L1ME1|LINE|L1 7783 NM_183227 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 351-302 chr3 70872214 70872517 + 2 NA Intergenic L2c|LINE|L2 192559 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 341-342 chr3 111917242 111917554 + 2 NA intron (NM_001134437, intron 4 of 17) intron (NM_001134437, intron 4 of 17) 57571 NM_001134439 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 429-112 chr16 61743566 61743875 + 2 NA intron (NM_001796, intron 8 of 11) L1ME3A|LINE|L1 292718 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 325-329 chr22 47935498 47935664 + 2 NA Intergenic AluSx3|SINE|Alu 303907 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 547-30 chr11 8403742 8404055 + 2 NA intron (NM_001352399, intron 11 of 11) intron (NM_001352399, intron 11 of 11) -135111 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 255-127 chr15 60805405 60805632 + 2 NA intron (NM_134261, intron 1 of 10) MIR|SINE|MIR 123949 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 704-3 chr1 98524519 98524993 + 2 NA Intergenic L1MEc|LINE|L1 -136965 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 532-195 chr4 180490479 180490922 + 2 NA Intergenic Intergenic 668449 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 234-122 chr16 72397043 72397209 + 2 NA intron (NR_126330, intron 7 of 13) L1ME2z|LINE|L1 -224676 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 565-149 chr5 125530898 125531221 + 2 NA intron (NR_109887, intron 3 of 3) L1ME1|LINE|L1 37798 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 204-160 chr2 196938626 196938810 + 2 NA Intergenic Intergenic -12011 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 210-112 chr19 51621480 51621636 + 2 NA intron (NM_003830, intron 8 of 8) intron (NM_003830, intron 8 of 8) 8916 NM_003830 8778 Hs.310333 NM_003830 ENSG00000105501 SIGLEC5 CD170|CD33L2|OB-BP2|OBBP2|SIGLEC-5 sialic acid binding Ig like lectin 5 protein-coding 174-66 chr2 79258159 79258300 + 2 NA Intergenic Intergenic -98476 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 216-110 chr15 37164599 37164756 + 2 NA Intergenic Intergenic -63366 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 187-146 chr6 35171540 35171654 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -30187 NM_001261818 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 367-106 chr13 29073881 29074235 + 2 NA intron (NM_001366651, intron 4 of 14) L2c|LINE|L2 49601 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 335-571 chr9 102501269 102501470 + 2 NA Intergenic HAL1|LINE|L1 -18268 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 153-69 chr3 98084450 98084556 + 2 NA Intergenic L3b|LINE|CR1 -2670 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 301-169 chr17 72634271 72634433 + 2 NA intron (NR_033876, intron 2 of 4) intron (NR_033876, intron 2 of 4) 6120 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 483-54 chr13 64598728 64599202 + 2 NA Intergenic AluY|SINE|Alu -522954 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 312-107 chr12 72986830 72987089 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -172231 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 329-160 chr14 54467851 54468038 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 21036 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 530-264 chr8 135292186 135292710 + 2 NA intron (NR_120395, intron 3 of 5) AluJo|SINE|Alu 58317 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 205-126 chr18 69726100 69726249 + 2 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 221699 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 564-204 chr8 133858910 133859432 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -27325 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 804-52 chr5 26493771 26494248 + 2 NA Intergenic HERV35I-int|LTR|ERV1 544577 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 420-317 chrX 91339228 91339628 + 2 NA Intergenic L1PB1|LINE|L1 -95411 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 430-61 chr12 14241152 14241553 + 2 NA Intergenic AluSx|SINE|Alu -124280 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 645-119 chr8 64951193 64951595 + 2 NA Intergenic L1M4|LINE|L1 -152657 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 471-38 chr10 123516815 123517125 + 2 NA Intergenic Intergenic -149385 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 338-175 chr15 27018057 27018271 + 2 NA intron (NM_001270873, intron 2 of 5) MIRc|SINE|MIR 46983 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 299-258 chr20 42353704 42353992 + 2 NA intron (NM_133170, intron 9 of 31) AluJr|SINE|Alu -331635 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 162-30 chr12 92688277 92688430 + 2 NA Intergenic Intergenic -14490 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 305-61 chr10 58458699 58458887 + 2 NA Intergenic Intergenic -54079 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 223-266 chr5 10959340 10959522 + 2 NA Intergenic L1MB1|LINE|L1 -198197 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 288-389 chr6 163846507 163846756 + 2 NA Intergenic L1M3|LINE|L1 -175147 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 312-244 chr2 83525133 83525326 + 2 NA Intergenic L1PA17|LINE|L1 2415 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 390-6 chr1 47203605 47203929 + 2 NA Intergenic L1MA4A|LINE|L1 -13731 NM_005764 10158 Hs.431099 NM_005764 ENSG00000162366 PDZK1IP1 DD96|MAP17|SPAP PDZK1 interacting protein 1 protein-coding 246-251 chr3 34652521 34652717 + 2 NA Intergenic Intergenic 741404 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 378-466 chrX 129273633 129273883 + 2 NA Intergenic L1M1|LINE|L1 249732 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 172-74 chr3 18894301 18894449 + 2 NA Intergenic Intergenic -254135 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 198-61 chr14 19902476 19902644 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -18047 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 469-37 chr10 71119535 71119871 + 2 NA Intergenic L1PA13|LINE|L1 -92867 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 387-50 chr11 13901552 13901876 + 2 NA Intergenic LTR16|LTR|ERVL 23149 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 1048-23 chr7 6679955 6680744 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 26598 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 288-283 chr3 188791277 188791545 + 2 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 102630 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 547-167 chr4 111825448 111825869 + 2 NA Intergenic L2|LINE|L2 -319796 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 404-140 chr18 21234355 21234616 + 2 NA Intergenic MIRb|SINE|MIR -7757 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 340-128 chr13 49402727 49403060 + 2 NA intron (NM_001287338, intron 2 of 11) intron (NM_001287338, intron 2 of 11) -1351 NM_030925 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 509-137 chr21 34021015 34021388 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 44819 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 386-361 chr8 126662006 126662289 + 2 NA Intergenic AluJr|SINE|Alu -103669 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 345-41 chr1 240791708 240792004 + 2 NA intron (NM_001350116, intron 16 of 16) intron (NM_001350116, intron 16 of 16) -179701 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 259-327 chr5 126988863 126989029 + 2 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 41612 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 211-220 chr5 4536063 4536223 + 2 NA Intergenic Intergenic -237338 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 130-86 chr8 96434151 96434247 + 2 NA Intergenic Intergenic -46761 NR_125828 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 553-79 chr16 77342268 77342632 + 2 NA intron (NM_199355, intron 10 of 22) intron (NM_199355, intron 10 of 22) 92584 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 169-135 chr8 78821925 78822023 + 2 NA Intergenic Intergenic -15555 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 187-29 chr11 30171832 30171997 + 2 NA Intergenic MIRb|SINE|MIR -59100 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 491-85 chr16 77050286 77050672 + 2 NA Intergenic Intergenic -140711 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 249-222 chr2 153067135 153067359 + 2 NA Intergenic Intergenic 348610 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 339-369 chr3 87928931 87929118 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -53552 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 318-274 chr2 83205418 83205623 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -317294 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 257-389 chr7 67871484 67871641 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -148691 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 282-212 chr2 80733121 80733313 + 2 NA Intergenic L1MA1|LINE|L1 419838 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 264-5 chr1 48789563 48789811 + 2 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -12718 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 237-408 chr9 88855962 88856161 + 2 NA Intergenic MER75B|DNA|PiggyBac -110156 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 403-242 chr5 27775984 27776344 + 2 NA Intergenic Intergenic 303872 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 356-296 chr21 17837653 17837914 + 2 NA intron (NR_024354, intron 2 of 2) LTR49-int|LTR|ERV1 -18427 NM_001100420 54149 Hs.293811 NM_017447 ENSG00000154642 C21orf91 C21orf14|C21orf38|CSSG1|EURL|YG81 chromosome 21 open reading frame 91 protein-coding 266-393 chr7 34539234 34539421 + 2 NA intron (NR_033665, intron 2 of 3) L1MEc|LINE|L1 -118891 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 418-123 chr2 117595582 117595928 + 2 NA Intergenic L1PB1|LINE|L1 -218936 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 147-66 chr4 71416229 71416374 + 2 NA intron (NM_003759, intron 4 of 22) MER44A|DNA|TcMar-Tigger 77248 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 239-108 chr14 66954074 66954305 + 2 NA intron (NM_020806, intron 8 of 22) L1MB5|LINE|L1 -235251 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 656-98 chr5 124409140 124409585 + 2 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 29158 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 145-80 chr7 105935091 105935200 + 2 NA Intergenic Intergenic -28119 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 347-256 chr2 220785780 220786070 + 2 NA Intergenic Intergenic 786379 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 328-444 chr5 40029326 40029530 + 2 NA Intergenic L1ME3E|LINE|L1 -22863 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 650-105 chr6 63779100 63779606 + 2 NA intron (NM_001292009, intron 39 of 43) AluY|SINE|Alu -27483 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 680-65 chr2 131004769 131005272 + 2 NA intron (NM_001367493, intron 4 of 13) intron (NM_001367493, intron 4 of 13) 88142 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 216-137 chr17 78237911 78238046 + 2 NA intron (NM_001204210, intron 4 of 5) intron (NM_001204210, intron 4 of 5) 6668 NM_001204210 283999 Hs.632228 NM_001145529 ENSG00000204278 TMEM235 ARGM1 transmembrane protein 235 protein-coding 382-360 chr6 99952700 99953007 + 2 NA intron (NM_001040179, intron 2 of 5) intron (NM_001040179, intron 2 of 5) -41185 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 266-232 chr3 3035661 3035884 + 2 NA intron (NM_175607, intron 17 of 24) AluJr|SINE|Alu 25373 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 493-183 chr20 51239379 51239790 + 2 NA Intergenic MER3|DNA|hAT-Charlie 213393 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 328-59 chr10 104571850 104572075 + 2 NA Intergenic L1MA8|LINE|L1 -69328 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 260-326 chr4 155272600 155272789 + 2 NA Intergenic L1MEc|LINE|L1 64058 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 255-149 chr16 76990639 76990860 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 121813 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 323-337 chr3 104158160 104158426 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -634177 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 174-95 chr3 134125358 134125449 + 2 NA Intergenic L1M5|LINE|L1 -67755 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 253-348 chr5 158505817 158505998 + 2 NA Intergenic Intergenic -96134 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 504-255 chr8 72832299 72832706 + 2 NA intron (NM_004770, intron 2 of 2) L2|LINE|L2 100457 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 131-63 chr5 99281769 99281892 + 2 NA Intergenic Intergenic -252160 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 507-234 chr7 84751921 84752240 + 2 NA Intergenic L1MA6|LINE|L1 219604 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 254-367 chr7 8309431 8309665 + 2 NA intron (NR_125740, intron 3 of 5) L1PA16|LINE|L1 -46936 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 270-224 chr22 33366550 33366780 + 2 NA intron (NM_133642, intron 9 of 14) THE1B|LTR|ERVL-MaLR 70004 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 488-230 chr6 14534061 14534437 + 2 NA Intergenic L1ME3G|LINE|L1 -248795 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 380-54 chr10 100102268 100102529 + 2 NA Intergenic L1MB7|LINE|L1 -20529 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 209-38 chr10 49089996 49090170 + 2 NA intron (NM_001031746, intron 2 of 7) intron (NM_001031746, intron 2 of 7) 25439 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 417-35 chr10 64179173 64179459 + 2 NA Intergenic Intergenic -646212 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 336-547 chr8 107691370 107691546 + 2 NA Intergenic L2c|LINE|L2 -193540 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 315-322 chr3 178891131 178891407 + 2 NA Intergenic L1MA2|LINE|L1 -30864 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 498-178 chr3 160980098 160980511 + 2 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 109706 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 440-100 chr18 61294187 61294494 + 2 NA Intergenic LTR52|LTR|ERVL -39090 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 261-178 chr2 38650235 38650487 + 2 NA Intergenic Intergenic -15753 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 366-473 chr9 110838273 110838542 + 2 NA Intergenic Intergenic 110145 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 543-138 chr2 198251165 198251513 + 2 NA Intergenic Intergenic 123758 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 256-143 chr15 87917351 87917589 + 2 NA intron (NM_001320135, intron 15 of 15) intron (NM_001320135, intron 15 of 15) 28798 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 636-5 chr1 75182106 75182707 + 2 NA Intergenic AluSp|SINE|Alu 48018 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 185-79 chr17 74509746 74509883 + 2 NA Intergenic L1M1|LINE|L1 21661 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 344-510 chr8 135476853 135477046 + 2 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 19493 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 565-116 chr3 89675412 89675939 + 2 NA Intergenic L1MEc|LINE|L1 568054 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 254-341 chr6 21251462 21251667 + 2 NA Intergenic L1MC3|LINE|L1 260328 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 284-401 chr8 52037461 52037633 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -138361 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 206-13 chr1 114602376 114602523 + 2 NA intron (NM_001256404, intron 11 of 20) intron (NM_001256404, intron 11 of 20) -20834 NM_005872 10286 Hs.22960 NM_005872 ENSG00000116752 BCAS2 DAM1|SPF27|Snt309 BCAS2 pre-mRNA processing factor protein-coding 597-78 chr2 157661871 157662309 + 2 NA Intergenic Intergenic -33226 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 190-78 chr19 30397324 30397475 + 2 NA intron (NM_014717, intron 1 of 4) L1MD2|LINE|L1 25015 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 321-123 chr12 18480611 18480869 + 2 NA intron (NM_001288774, intron 18 of 32) MER66B|LTR|ERV1 219200 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 248-280 chr4 63636848 63637027 + 2 NA Intergenic Intergenic 772513 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 234-115 chr15 95083316 95083459 + 2 NA Intergenic Intergenic 228024 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 278-360 chr6 13983859 13984101 + 2 NA Intergenic Intergenic 58787 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 656-147 chrX 97321484 97321966 + 2 NA intron (NM_007309, intron 23 of 26) AluY|SINE|Alu 242810 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 492-34 chr10 130440804 130441244 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 304615 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 267-421 chr8 85405554 85405722 + 2 NA Intergenic Intergenic -27525 NM_001738 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 551-118 chr3 80924405 80924827 + 2 NA Intergenic Intergenic -69252 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 275-34 chr10 20191014 20191188 + 2 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) -360869 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 173-16 chr11 21307786 21307913 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 638263 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 271-52 chr10 67325825 67326001 + 2 NA intron (NM_001127384, intron 5 of 17) L1PA13|LINE|L1 77497 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 235-53 chr10 119263311 119263487 + 2 NA intron (NM_005308, intron 1 of 15) MER103C|DNA|hAT-Charlie 55828 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 297-283 chr22 48397432 48397713 + 2 NA Intergenic Intergenic -91981 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 451-33 chr10 131137961 131138278 + 2 NA intron (NM_174937, intron 7 of 11) AluSx|SINE|Alu 42901 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 335-342 chr3 40702465 40702660 + 2 NA Intergenic L1MC1|LINE|L1 177602 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 410-167 chr20 52704995 52705277 + 2 NA Intergenic Intergenic 84298 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 227-354 chr7 83065839 83066020 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 96955 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 460-267 chr7 4851498 4851835 + 2 NA intron (NM_018059, intron 2 of 14) MLT1E3-int|LTR|ERVL-MaLR 10364 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 298-285 chr3 1037698 1037908 + 2 NA Intergenic L1MB7|LINE|L1 -55221 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 136-35 chr16 62811750 62811856 + 2 NA Intergenic Intergenic -775365 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 559-95 chr2 89821299 89821695 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -183590 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 353-135 chr14 41333895 41334104 + 2 NA Intergenic Intergenic -272857 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 358-373 chr5 87676006 87676228 + 2 NA intron (NR_149089, intron 1 of 1) L2a|LINE|L2 14075 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 257-183 chr2 50034665 50034814 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -60536 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 335-275 chr2 177869369 177869635 + 2 NA intron (NM_001077197, intron 6 of 20) MLT1E2|LTR|ERVL-MaLR 19254 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 228-134 chr17 69864767 69864982 + 2 NA intron (NR_109972, intron 4 of 4) intron (NR_109972, intron 4 of 4) -96833 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 446-89 chr13 21641250 21641653 + 2 NA Intergenic Intergenic -29622 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 289-29 chr1 194914610 194914806 + 2 NA Intergenic LTR1E|LTR|ERV1 1174007 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 207-151 chr2 150232622 150232794 + 2 NA Intergenic Intergenic 24299 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 525-88 chr17 39967399 39967801 + 2 NA intron (NM_178171, intron 3 of 11) intron (NM_178171, intron 3 of 11) 4596 NM_178171 284110 Hs.448873 NM_178171 ENSG00000167914 GSDMA FKSG9|GSDM|GSDM1 gasdermin A protein-coding 219-200 chr20 17304026 17304231 + 2 NA intron (NM_002594, intron 2 of 11) MIR|SINE|MIR 77088 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 314 chr1 4259564 4259847 + 2 NA Intergenic Intergenic -152346 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 339-30 chr1 164555681 164555957 + 2 NA Intergenic MIRb|SINE|MIR -3541 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 518-21 chr10 18269793 18270125 + 2 NA intron (NM_000724, intron 1 of 12) L2c|LINE|L2 9237 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 244-215 chr22 49561917 49562113 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -18549 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 429-133 chr19 13476931 13477300 + 2 NA intron (NM_023035, intron 1 of 46) L2a|LINE|L2 29345 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 301-242 chr2 211516508 211516674 + 2 NA intron (NM_001042599, intron 20 of 26) AluSz|SINE|Alu 899020 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 583-176 chr9 126734900 126735445 + 2 NA Intergenic L1M4|LINE|L1 -69834 NM_001135776 23099 Hs.355581 NM_014007 ENSG00000169155 ZBTB43 ZBTB22B|ZNF-X|ZNF297B zinc finger and BTB domain containing 43 protein-coding 308-548 chrX 75037786 75037945 + 2 NA Intergenic L1M1|LINE|L1 -112413 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 295-301 chr3 100143987 100144246 + 2 NA intron (NM_001167924, intron 1 of 9) L1MDa|LINE|L1 29186 NM_001167924 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 257-398 chr8 9531213 9531388 + 2 NA Intergenic Intergenic -24612 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 188-185 chr6 136255487 136255635 + 2 NA Intergenic Intergenic -5250 NM_138419 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 520-158 chr2 175513447 175513868 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -331947 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 236-285 chr5 55487650 55487828 + 2 NA intron (NM_003711, intron 1 of 5) intron (NM_003711, intron 1 of 5) 21187 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 525-166 chr3 105175937 105176348 + 2 NA Intergenic Intergenic -190571 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 433-187 chr3 191692309 191692549 + 2 NA Intergenic MIRb|SINE|MIR 231266 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 203-72 chr15 36277882 36278033 + 2 NA Intergenic L1PA15-16|LINE|L1 -301669 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 354-418 chr6 168014552 168014897 + 2 NA Intergenic Intergenic -3149 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 314-567 chr8 75826952 75827114 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 287065 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 542-92 chr2 22241785 22242141 + 2 NA Intergenic Intergenic -294516 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 120-27 chr2 26390245 26390309 + 2 NA non-coding (NR_137633, exon 10 of 10) non-coding (NR_137633, exon 10 of 10) -11643 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 477-304 chr9 102877988 102878345 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -117167 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 233-260 chr4 62017299 62017457 + 2 NA intron (NM_001371343, intron 20 of 23) L1M5|LINE|L1 144387 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 249-403 chr8 38599927 38600147 + 2 NA TTS (NR_003129) TTS (NR_003129) 1220 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 140-7 chr10 60983895 60984011 + 2 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) 17044 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 283-409 chr7 18470630 18470802 + 2 NA intron (NM_001204144, intron 3 of 12) MER58A|DNA|hAT-Charlie -24994 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 242-258 chr4 43623174 43623336 + 2 NA Intergenic Intergenic -130712 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 454-184 chr2 233266573 233266932 + 2 NA intron (NM_030803, intron 5 of 17).2 L1MA4|LINE|L1 -8974 NR_003008 677775 Hs.663619 NR_003008 ENSG00000252010 SCARNA5 U87 small Cajal body-specific RNA 5 ncRNA 299 chr1 11401264 11401461 + 2 NA Intergenic AluSz6|SINE|Alu -77793 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 518-215 chr4 131083703 131084074 + 2 NA Intergenic L2|LINE|L2 -680950 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 277-233 chr20 55476038 55476266 + 2 NA Intergenic Intergenic -48955 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 741-21 chr15 24596955 24597349 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 38995 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 623-80 chr3 2949162 2949694 + 2 NA intron (NM_175607, intron 13 of 24) intron (NM_175607, intron 13 of 24) 57213 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 228-360 chr8 140071683 140071843 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 28772 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 253-304 chr4 113808012 113808201 + 2 NA Intergenic Intergenic -46179 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 339-445 chr5 45113080 45113314 + 2 NA Intergenic MADE2|DNA|TcMar-Mariner 304250 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 191-171 chr5 60477996 60478151 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -9640 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 389-88 chr12 116488975 116489248 + 2 NA Intergenic AluJo|SINE|Alu -44311 NR_027345 100287569 Hs.441601 NM_207436 ENSG00000196668 LINC00173 NCRNA00173 long intergenic non-protein coding RNA 173 ncRNA 201-222 chr6 126275152 126275341 + 2 NA Intergenic MIR|SINE|MIR -64543 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 175-122 chr4 188263276 188263429 + 2 NA Intergenic Intergenic 123911 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 303-67 chr11 42472629 42472870 + 2 NA Intergenic Intergenic -219059 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 324-379 chr4 35855141 35855426 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 388656 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 689-52 chr2 146615100 146615491 + 2 NA Intergenic Intergenic 28238 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 338-291 chr20 9154107 9154392 + 2 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -63141 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 330-366 chr3 181524103 181524315 + 2 NA intron (NR_075091, intron 3 of 7) MSTB|LTR|ERVL-MaLR -81723 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 299-70 chr10 129747724 129747904 + 2 NA intron (NM_002412, intron 3 of 4) L1MC3|LINE|L1 95560 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 259-322 chr5 111542215 111542417 + 2 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -29719 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 136-14 chr11 30648536 30648667 + 2 NA Intergenic L1MB4|LINE|L1 -62248 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 283-389 chr6 22347943 22348118 + 2 NA Intergenic Intergenic -45195 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 215-32 chr10 51805926 51806103 + 2 NA intron (NM_001098512, intron 4 of 17) (ATGT)n|Simple_repeat|Simple_repeat -106419 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 214-224 chr3 166834550 166834701 + 2 NA Intergenic L1MA10|LINE|L1 -64058 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 376-51 chr10 63230477 63230749 + 2 NA intron (NM_001322252, intron 2 of 24) AluSc8|SINE|Alu 38610 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 238-155 chr19 11962320 11962476 + 2 NA Intergenic Intergenic -2642 NM_001367172 284390 Hs.646386 NM_001012753 ENSG00000197054 ZNF763 ZNF|ZNF440L zinc finger protein 763 protein-coding 691-76 chr6 121625836 121626423 + 2 NA Intergenic LTR7|LTR|ERV1 190483 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 633-64 chr2 106714471 106714961 + 2 NA Intergenic Intergenic 171312 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 663-122 chr9 84146275 84146711 + 2 NA Intergenic L2a|LINE|L2 83050 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 337-306 chr20 20904440 20904685 + 2 NA Intergenic LTR16C|LTR|ERVL -191918 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 214-42 chr10 73752584 73752700 + 2 NA intron (NM_198597, intron 3 of 22) intron (NM_198597, intron 3 of 22) 8270 NM_004922 9632 Hs.81964 NM_004922 ENSG00000176986 SEC24C - SEC24 homolog C, COPII coat complex component protein-coding 235-242 chr3 185238247 185238451 + 2 NA intron (NM_001966, intron 2 of 6) L1PB4|LINE|L1 14923 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 435-21 chr1 208723003 208723226 + 2 NA Intergenic Intergenic -5574 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 232-222 chr21 17439422 17439588 + 2 NA intron (NR_037586, intron 1 of 3) intron (NR_037586, intron 1 of 3) 615 NR_037585 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 379-234 chr4 64382249 64382587 + 2 NA intron (NM_001363796, intron 1 of 11) L1MA4|LINE|L1 27032 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 295-341 chr4 60541641 60541856 + 2 NA Intergenic MER89|LTR|ERV1 -380871 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 272-297 chr4 41887567 41887767 + 2 NA Intergenic Intergenic -5056 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 258-338 chr5 170144456 170144664 + 2 NA Intergenic Intergenic 38663 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 319-335 chr3 94546761 94546966 + 2 NA Intergenic L1MA5A|LINE|L1 -391400 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 161-26 chr14 45427204 45427311 + 2 NA Intergenic Intergenic -174055 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 371-15 chr1 115463687 115463903 + 2 NA Intergenic L2b|LINE|L2 -125559 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 367-446 chr8 60084610 60084879 + 2 NA Intergenic Intergenic 196656 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 646-38 chr14 69616567 69616959 + 2 NA intron (NM_014734, intron 1 of 5) intron (NM_014734, intron 1 of 5) 5167 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 346-44 chr10 31459625 31459846 + 2 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -59980 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 246-317 chr5 24719354 24719572 + 2 NA Intergenic Intergenic -74485 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 459-249 chr5 155084128 155084393 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 70505 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 415-214 chr5 45722807 45723067 + 2 NA Intergenic Intergenic -26557 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 309-58 chr10 77619128 77619325 + 2 NA intron (NM_001271519, intron 1 of 28) MLT1H1|LTR|ERVL-MaLR 18582 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 351-50 chr10 113630982 113631314 + 2 NA intron (NM_001322945, intron 18 of 40) L2a|LINE|L2 32893 NM_001322945 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 183-69 chr2 28108148 28108258 + 2 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 98758 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 280-49 chr10 55325905 55326139 + 2 NA intron (NM_001354404, intron 2 of 34) L1PA15|LINE|L1 -273020 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 182-114 chr3 180754900 180755015 + 2 NA intron (NR_109986, intron 4 of 13) intron (NR_109986, intron 4 of 13) -75468 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 379-120 chr17 61292034 61292400 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 75487 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 462-293 chr9 23050203 23050601 + 2 NA Intergenic L1MCa|LINE|L1 404202 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 276-420 chr6 168009749 168009967 + 2 NA Intergenic L1M2c|LINE|L1 -8015 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 243-341 chr4 166090694 166090893 + 2 NA intron (NM_012464, intron 18 of 20) intron (NM_012464, intron 18 of 20) 217556 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 575-200 chr8 119551502 119551862 + 2 NA Intergenic L1ME1|LINE|L1 41326 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 211-128 chr19 51618105 51618267 + 2 NA intron (NM_003830, intron 8 of 8) L1ME3F|LINE|L1 12288 NM_003830 8778 Hs.310333 NM_003830 ENSG00000105501 SIGLEC5 CD170|CD33L2|OB-BP2|OBBP2|SIGLEC-5 sialic acid binding Ig like lectin 5 protein-coding 380-200 chr2 142551127 142551392 + 2 NA Intergenic L1MB1|LINE|L1 -326405 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 313-153 chr14 72104793 72105030 + 2 NA intron (NM_001370288, intron 2 of 16) MER5A1|DNA|hAT-Charlie 171384 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 328-479 chr5 155805769 155806053 + 2 NA Intergenic Intergenic -520846 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 587-91 chr20 59210762 59211135 + 2 NA intron (NM_178457, intron 3 of 4) AluYb8|SINE|Alu 19928 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 332-243 chr2 34056193 34056407 + 2 NA intron (NR_126403, intron 4 of 5) L1M1|LINE|L1 -10926 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 539-39 chr11 104284804 104285192 + 2 NA Intergenic Intergenic -120851 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 239-435 chr9 81389713 81389912 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 299723 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 454-285 chr7 21575596 21575907 + 2 NA intron (NM_001277115, intron 8 of 81) L1ME4b|LINE|L1 32712 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 284-12 chr1 96104770 96104965 + 2 NA Intergenic Intergenic 112799 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 422-245 chr5 117631381 117631705 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -98818 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 204-200 chr3 96988920 96989116 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 174424 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 319-513 chr7 143848104 143848391 + 2 NA Intergenic L1MA6|LINE|L1 -11530 NR_015421 154761 Hs.716689 NR_015421 ENSG00000253882 LOC154761 - family with sequence similarity 115, member C pseudogene pseudo 585-142 chr6 141535460 141536021 + 2 NA Intergenic L1MD2|LINE|L1 553059 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 159-53 chr21 24930568 24930677 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 90072 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 452-172 chr3 95307691 95308014 + 2 NA Intergenic L1MA9|LINE|L1 369589 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 263-303 chr4 125957758 125957988 + 2 NA Intergenic Intergenic 450614 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 544-129 chr2 182089668 182090153 + 2 NA intron (NM_001261425, intron 4 of 5) intron (NM_001261425, intron 4 of 5) 104057 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 215-230 chr4 90987594 90987745 + 2 NA intron (NM_001145065, intron 9 of 10) intron (NM_001145065, intron 9 of 10) 752638 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 580-161 chr6 8222424 8222868 + 2 NA Intergenic Intergenic -120051 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 520-30 chr10 39021058 39021417 + 2 NA Intergenic ALR/Alpha|Satellite|centr 324641 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 218-255 chr5 1913890 1914049 + 2 NA Intergenic Intergenic 26638 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 459-9 chr1 71634756 71635110 + 2 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 202079 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 232-204 chr2 204764933 204765111 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 219547 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 462-105 chr16 72640515 72640899 + 2 NA intron (NR_159372, intron 1 of 7) L1MC4|LINE|L1 24263 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 328-308 chr20 8782700 8782942 + 2 NA intron (NM_182734, intron 27 of 32) intron (NM_182734, intron 27 of 32) -48364 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 269-177 chr2 15688510 15688686 + 2 NA Intergenic Intergenic -2184 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 216-275 chr5 39412895 39413055 + 2 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 12005 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 316-162 chr14 35928848 35929105 + 2 NA Intergenic L1ME1|LINE|L1 102638 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 249-219 chr2 150384467 150384710 + 2 NA Intergenic L1PB3|LINE|L1 103107 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 143-18 chr12 56323137 56323252 + 2 NA exon (NM_001127460, exon 17 of 26) exon (NM_001127460, exon 17 of 26) -6846 NM_001190991 10330 Hs.8752 NM_014255 ENSG00000257727 CNPY2 HP10390|MSAP|TMEM4|ZSIG9 canopy FGF signaling regulator 2 protein-coding 319-133 chr14 37389116 37389374 + 2 NA intron (NM_138731, intron 11 of 13) intron (NM_138731, intron 11 of 13) 191308 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 261-134 chr16 83060780 83060951 + 2 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -70567 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 316-56 chr10 17955987 17956256 + 2 NA intron (NM_001145195, intron 2 of 12) intron (NM_001145195, intron 2 of 12) 4203 NM_001145195 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 302-411 chr7 46503082 46503321 + 2 NA Intergenic MLT2A2|LTR|ERVL 193921 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 420-48 chr10 108433769 108434131 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -364657 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 290-479 chr9 27984494 27984672 + 2 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -410717 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 242-337 chr6 39557113 39557270 + 2 NA intron (NM_001289020, intron 10 of 21) intron (NM_001289020, intron 10 of 21) -125801 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 336-107 chr11 87679643 87679910 + 2 NA Intergenic Intergenic 39635 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 323-228 chr2 21101332 21101600 + 2 NA Intergenic MER20|DNA|hAT-Charlie -22520 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 600-95 chr4 124235046 124235514 + 2 NA Intergenic L1MEd|LINE|L1 323154 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 231-251 chr4 47172013 47172170 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 140524 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 158-104 chr6 132230131 132230263 + 2 NA Intergenic Intergenic 96219 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 469-51 chr11 48203169 48203472 + 2 NA Intergenic L1PBa|LINE|L1 -13490 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 367-364 chr5 86073693 86073888 + 2 NA Intergenic LTR44|LTR|ERV1 -208654 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 457-245 chr7 124540133 124540445 + 2 NA Intergenic Intergenic -188193 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 271-278 chr3 120278276 120278523 + 2 NA Intergenic L1PA16|LINE|L1 -34104 NM_001168271 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 648-52 chr16 48838044 48838609 + 2 NA Intergenic L2a|LINE|L2 -228146 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 693-97 chr8 55178350 55178822 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 76558 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 233-277 chr4 149776777 149776960 + 2 NA intron (NM_001363507, intron 2 of 13) (ATA)n|Simple_repeat|Simple_repeat 38975 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 347-401 chr5 75766781 75766978 + 2 NA Intergenic L1PB1|LINE|L1 -49442 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 224-337 chr8 128157162 128157380 + 2 NA Intergenic MIR|SINE|MIR 7155 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 566-177 chr7 30054437 30054996 + 2 NA exon (NM_032639, exon 8 of 13) exon (NM_032639, exon 8 of 13) 9631 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 238-76 chr11 112439200 112439373 + 2 NA Intergenic L1M1|LINE|L1 -42946 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 272-383 chr6 55154107 55154283 + 2 NA intron (NM_001526, intron 1 of 7) L1M3|LINE|L1 47735 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 245-245 chr4 16192907 16193125 + 2 NA intron (NM_153365, intron 3 of 13) intron (NM_153365, intron 3 of 13) 33455 NM_153365 202018 Hs.479223 NM_153365 ENSG00000169762 TAPT1 CMVFR|OCLSBG transmembrane anterior posterior transformation 1 protein-coding 336-81 chr11 2275761 2276073 + 2 NA Intergenic Intergenic -4965 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 342-174 chr16 23843123 23843359 + 2 NA intron (NM_002738, intron 2 of 16) Tigger18a|DNA|TcMar-Tigger 7258 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 377-376 chr7 68448647 68448964 + 2 NA Intergenic Intergenic 428552 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 448-108 chr2 48292074 48292415 + 2 NA Intergenic Intergenic -22438 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 359-26 chr1 165010669 165011000 + 2 NA Intergenic Intergenic -236193 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 257-39 chr10 53893377 53893585 + 2 NA intron (NM_001354411, intron 27 of 34) L1PB1|LINE|L1 -592749 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 733-10 chr11 32719233 32719728 + 2 NA intron (NM_001008391, intron 2 of 17) L1M4|LINE|L1 75178 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 233-49 chr10 109426068 109426290 + 2 NA Intergenic Intergenic 497067 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 418-103 chr19 30772281 30772671 + 2 NA Intergenic L1MD2|LINE|L1 -395034 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 306-344 chr4 26313850 26314100 + 2 NA Intergenic L1ME4b|LINE|L1 -5735 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 265-108 chr14 67404161 67404309 + 2 NA intron (NM_016445, intron 1 of 8) intron (NM_016445, intron 1 of 8) 7930 NM_016445 26499 Hs.170473 NM_016445 ENSG00000100558 PLEK2 - pleckstrin 2 protein-coding 485-148 chr2 155151128 155151530 + 2 NA Intergenic Intergenic 452634 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 549-124 chr2 221252636 221253006 + 2 NA Intergenic Intergenic 319483 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 497-183 chr3 113732442 113732734 + 2 NA intron (NM_025146, intron 1 of 4) MLT1B|LTR|ERVL-MaLR 13661 NM_025146 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 373-2 chr1 9038319 9038548 + 2 NA exon (NM_001328620, exon 10 of 12) exon (NM_001328620, exon 10 of 12) -12088 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 320-283 chr2 146641313 146641532 + 2 NA Intergenic L1MD|LINE|L1 54365 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 498-137 chr2 173550963 173551416 + 2 NA Intergenic L2a|LINE|L2 196317 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 163-93 chr4 35132824 35132956 + 2 NA Intergenic Intergenic -863143 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 401-273 chr5 161064350 161064700 + 2 NA Intergenic Intergenic -125899 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 256-443 chr9 1633457 1633640 + 2 NA Intergenic Intergenic -381799 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 267-73 chr11 130797645 130797862 + 2 NA Intergenic MIRb|SINE|MIR 64357 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 349-467 chr6 170141612 170141816 + 2 NA Intergenic L1MA8|LINE|L1 -18928 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 581-120 chr4 123042378 123042805 + 2 NA intron (NM_001345856, intron 11 of 15) L1MCa|LINE|L1 119513 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 392-134 chr2 480058 480396 + 2 NA Intergenic L1M5|LINE|L1 12428 NR_146437 727944 NR_146436 ENSG00000223985 LINC01874 - long intergenic non-protein coding RNA 1874 ncRNA 185-171 chr5 105437771 105437922 + 2 NA Intergenic Intergenic 338372 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 393-18 chr1 154294449 154294685 + 2 NA Intergenic L1M4a1|LINE|L1 21938 NM_001018837 10456 Hs.199625 NM_006118 ENSG00000143575 HAX1 HCLSBP1|HS1BP1|SCN3 HCLS1 associated protein X-1 protein-coding 349-337 chr3 106787571 106787884 + 2 NA Intergenic Intergenic 452911 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 260-379 chr6 72680624 72680813 + 2 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 50223 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 373-339 chr5 140559293 140559633 + 2 NA intron (NM_133174, intron 11 of 11) L2b|LINE|L2 -1370 NM_001035235 10011 Hs.653135 NM_001035235 ENSG00000213523 SRA1 SRA|SRAP|STRAA1|pp7684 steroid receptor RNA activator 1 protein-coding 388-355 chr8 135468466 135468685 + 2 NA intron (NM_006558, intron 1 of 8) MER58A|DNA|hAT-Charlie 11119 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 282-484 chr9 73408492 73408636 + 2 NA Intergenic MER53|DNA|hAT 256699 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 235-98 chr14 48661058 48661248 + 2 NA Intergenic L1MEf|LINE|L1 -866139 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 265-303 chr5 52373264 52373469 + 2 NA Intergenic Intergenic 365335 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 192-174 chr6 62922832 62923011 + 2 NA Intergenic Intergenic 397056 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 310-170 chr16 48710248 48710526 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -100207 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 339-98 chr11 61155669 61155870 + 2 NA intron (NM_017966, intron 1 of 4) L1MEc|LINE|L1 5657 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 269-104 chr13 55884013 55884180 + 2 NA Intergenic L1M3c|LINE|L1 709642 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 214-67 chr11 93975876 93976022 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -45405 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 329-26 chr1 192200334 192200607 + 2 NA Intergenic Intergenic 42008 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 240-344 chr5 25472239 25472413 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 281373 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 236-48 chr10 76482077 76482235 + 2 NA intron (NM_001305581, intron 6 of 6) L2|LINE|L2 -405888 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 490-106 chr16 60521586 60522040 + 2 NA Intergenic L1MA4A|LINE|L1 -162020 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 325-174 chr14 87857054 87857324 + 2 NA Intergenic Intergenic 135993 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 525-215 chr6 5754873 5755268 + 2 NA intron (NM_006567, intron 6 of 6) L1MEd|LINE|L1 -59798 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 283-181 chr17 58271274 58271440 + 2 NA intron (NM_000250, intron 11 of 11) intron (NM_000250, intron 11 of 11) 9578 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 615-116 chr5 161887640 161888029 + 2 NA intron (NM_000806, intron 8 of 10) MIRc|SINE|MIR 37109 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 311-155 chr15 46210015 46210182 + 2 NA Intergenic Intergenic 504903 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 481-242 chr5 30067294 30067696 + 2 NA Intergenic Intergenic 186935 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 379-50 chr10 122319049 122319327 + 2 NA intron (NM_001318189, intron 10 of 15) L1ME1|LINE|L1 47892 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 542-126 chr22 27675668 27676114 + 2 NA Intergenic Intergenic 125865 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 408-254 chr4 166207498 166207760 + 2 NA Intergenic MIRb|SINE|MIR 334392 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 227-359 chr7 125102408 125102570 + 2 NA intron (NR_125719, intron 5 of 7) intron (NR_125719, intron 5 of 7) -82080 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 364-2 chr1 14831304 14831489 + 2 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -92733 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 249-463 chrX 50549838 50550080 + 2 NA Intergenic L1MC4a|LINE|L1 -79134 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 267-262 chr3 110167771 110167983 + 2 NA Intergenic AluSp|SINE|Alu 565049 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 259-344 chr6 64326052 64326249 + 2 NA intron (NM_001292009, intron 29 of 43) HERV1_LTRc|LTR|ERV1 519314 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 386-109 chr14 85002817 85003083 + 2 NA Intergenic Intergenic -268982 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 327-525 chr9 82211981 82212275 + 2 NA Intergenic L1MB8|LINE|L1 223356 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 468-128 chr19 27398408 27398785 + 2 NA Intergenic ALR/Alpha|Satellite|centr -394835 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 396-168 chr2 76374980 76375276 + 2 NA Intergenic Intergenic -610837 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 233-295 chr5 43426408 43426626 + 2 NA Intergenic Intergenic -14126 NM_001301873 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 316-279 chr2 114630771 114631025 + 2 NA intron (NM_001321908, intron 2 of 25) LTR78|LTR|ERV1 169321 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 400-250 chr4 62668449 62668771 + 2 NA Intergenic Intergenic -506845 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 523-57 chr11 112848103 112848619 + 2 NA Intergenic L1MB4|LINE|L1 -113059 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 262-377 chr6 93854662 93854879 + 2 NA Intergenic L1PB3|LINE|L1 136467 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 240-307 chr3 190461932 190462090 + 2 NA Intergenic MLT2B3|LTR|ERVL -12135 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 387-54 chr11 21009374 21009689 + 2 NA intron (NM_201551, intron 12 of 18) MamRep605|LTR?|LTR? 339945 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 938-26 chr7 51508345 51509029 + 2 NA Intergenic L1M1|LINE|L1 -115431 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 298-457 chr8 56462444 56462653 + 2 NA intron (NR_125813, intron 1 of 3) intron (NR_125813, intron 1 of 3) -15907 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 383-231 chr21 25231025 25231354 + 2 NA Intergenic Intergenic 200512 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 403-276 chr6 163842521 163842767 + 2 NA Intergenic Intergenic -171160 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 239-75 chr12 46572088 46572278 + 2 NA intron (NR_125377, intron 3 of 3) intron (NR_125377, intron 3 of 3) 188076 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 388-153 chr2 30355488 30355724 + 2 NA Intergenic Intergenic 8960 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 311-500 chr8 76223090 76223338 + 2 NA Intergenic Intergenic -183440 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 398-202 chr3 47941831 47942142 + 2 NA intron (NM_002375, intron 3 of 18) intron (NM_002375, intron 3 of 18) 92431 NR_031595 100302232 NR_031595 ENSG00000221585 MIR1226 MIRN1226|hsa-mir-1226|mir-1226 microRNA 1226 ncRNA 255-349 chr6 5919790 5919954 + 2 NA Intergenic L1MEf|LINE|L1 84172 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 299-223 chr2 133604027 133604190 + 2 NA Intergenic Intergenic -35645 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 359-425 chr6 63793001 63793226 + 2 NA intron (NM_001292009, intron 37 of 43) MER45B|DNA|hAT-Tip100 -13723 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 291-249 chr2 222526934 222527088 + 2 NA intron (NM_152386, intron 4 of 4) intron (NM_152386, intron 4 of 4) 102468 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 524-132 chr20 45397219 45397500 + 2 NA intron (NR_003189, intron 3 of 5) L1MCa|LINE|L1 -8634 NM_001197139 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 344-50 chr10 45535328 45535581 + 2 NA promoter-TSS (NM_001002266) promoter-TSS (NM_001002266) -83 NM_001282866 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 309-302 chr20 37607825 37607980 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 15217 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 263-38 chr10 26371472 26371677 + 2 NA Intergenic Intergenic -66767 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 454-340 chr9 87822153 87822460 + 2 NA Intergenic L1P4|LINE|L1 -22439 NR_033405 1518 Hs.726015 NR_033405 CTSLP8 CTSL1P8 cathepsin L pseudogene 8 pseudo 596-81 chr18 35305164 35305574 + 2 NA intron (NR_024565, intron 2 of 2) intron (NR_024565, intron 2 of 2) 15097 NR_024565 10778 Hs.314246 NM_006629 ENSG00000257267 ZNF271P CT-ZFP48|HZF7|ZNF-EB|ZNF-dp|ZNF271|ZNFEB zinc finger protein 271, pseudogene pseudo 261-129 chr16 62403367 62403527 + 2 NA Intergenic Intergenic -367009 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 376-442 chrX 122990320 122990689 + 2 NA Intergenic Intergenic -193739 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 307-55 chr10 55302985 55303185 + 2 NA intron (NM_001354404, intron 2 of 34) ERVL-B4-int|LTR|ERVL -295957 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 433-128 chr2 29949690 29950059 + 2 NA Intergenic Intergenic -28288 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 480-309 chr9 26074970 26075355 + 2 NA intron (NM_001004352, intron 1 of 6) L1PA8A|LINE|L1 8487 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 160-99 chr6 145399554 145399659 + 2 NA Intergenic Intergenic 287271 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 219-219 chr21 27566281 27566427 + 2 NA Intergenic Intergenic -156025 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 575-108 chr21 34331120 34331679 + 2 NA Intergenic Intergenic -32625 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 662-38 chr18 9491322 9491894 + 2 NA intron (NM_006788, intron 1 of 9) AluSx|SINE|Alu 16095 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 201-66 chr12 117926796 117926971 + 2 NA intron (NM_173598, intron 1 of 19) MIRb|SINE|MIR 42107 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 682-19 chr11 98486060 98486622 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger -534608 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 301-172 chr18 5672136 5672365 + 2 NA Intergenic Intergenic -43259 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 332-95 chr11 79561831 79562019 + 2 NA Intergenic Intergenic -120895 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 244-224 chr3 41532735 41532909 + 2 NA intron (NR_136342, intron 30 of 34) intron (NR_136342, intron 30 of 34) 333317 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 376-170 chr2 18815981 18816254 + 2 NA Intergenic Intergenic 210854 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 387-82 chr12 55246003 55246311 + 2 NA Intergenic LTR85b|LTR|Gypsy? -1131 NM_001005490 254783 Hs.554556 NM_001005490 ENSG00000197706 OR6C74 - olfactory receptor family 6 subfamily C member 74 protein-coding 166-108 chr7 26739213 26739345 + 2 NA intron (NM_003930, intron 5 of 12) intron (NM_003930, intron 5 of 12) 101408 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 570-51 chr12 61163305 61163802 + 2 NA Intergenic L1MEf|LINE|L1 1029286 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 352-114 chr12 97914149 97914467 + 2 NA Intergenic L2a|LINE|L2 24813 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 205-265 chr7 113045062 113045210 + 2 NA Intergenic L1ME4a|LINE|L1 41202 NM_001146266 54329 Hs.152009 NM_018970 ENSG00000164604 GPR85 SREB|SREB2 G protein-coupled receptor 85 protein-coding 359-178 chr17 8925053 8925388 + 2 NA intron (NM_001142633, intron 1 of 18) intron (NM_001142633, intron 1 of 18) -12703 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 566-82 chr2 13509351 13509887 + 2 NA Intergenic MER119|DNA|hAT-Charlie -502606 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 399-80 chr14 20782689 20783082 + 2 NA TTS (NM_005615) TTS (NM_005615) 1617 NM_005615 6039 Hs.23262 NM_005615 ENSG00000169413 RNASE6 RAD1|RNS6|RNasek6 ribonuclease A family member k6 protein-coding 359-231 chr2 81031506 81031777 + 2 NA Intergenic L1M1|LINE|L1 435305 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 308-151 chr14 84425653 84425883 + 2 NA Intergenic Intergenic -846164 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 212-332 chr8 126632336 126632497 + 2 NA Intergenic (TTATTT)n|Simple_repeat|Simple_repeat -73938 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 169-79 chr3 135557304 135557428 + 2 NA Intergenic L3|LINE|CR1 -408362 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 335-240 chr2 51137510 51137789 + 2 NA intron (NR_135237, intron 2 of 10) L1MA6|LINE|L1 105048 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 475-108 chr18 400335 400660 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 100204 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 258-418 chr9 25472544 25472693 + 2 NA Intergenic L1PA11|LINE|L1 206240 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 449-42 chr11 32488611 32488976 + 2 NA Intergenic Intergenic 52754 NR_120546 51352 Hs.567499 NM_015855 ENSG00000183242 WT1-AS WIT-1|WIT1|WT1-AS1|WT1AS WT1 antisense RNA ncRNA 1149 chr10 39068667 39069571 + 2 NA Intergenic ALR/Alpha|Satellite|centr 372523 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 282-247 chr2 215640975 215641161 + 2 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -76975 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 453-169 chr3 128289779 128290115 + 2 NA intron (NM_021937, intron 4 of 6) L1MC3|LINE|L1 -136033 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 339-248 chr2 35196847 35197116 + 2 NA Intergenic Intergenic -274424 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 333-223 chr2 14918402 14918594 + 2 NA Intergenic L2b|LINE|L2 285781 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 220-324 chr6 125503839 125504034 + 2 NA Intergenic Charlie19a|DNA|hAT-Charlie -170417 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 754-31 chr17 79216705 79217177 + 2 NA intron (NM_001350453, intron 3 of 13) intron (NM_001350453, intron 3 of 13) 142004 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 203-260 chrX 120492652 120492816 + 2 NA Intergenic MER49|LTR|ERV1 -23385 NM_013995 3920 Hs.496684 NM_002294 ENSG00000005893 LAMP2 CD107b|LAMP-2|LAMPB|LGP-96|LGP110 lysosomal associated membrane protein 2 protein-coding 225-129 chr17 69817248 69817394 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -144386 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 392-85 chr14 76701840 76702065 + 2 NA Intergenic Intergenic -59516 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 341-263 chr2 114247159 114247336 + 2 NA Intergenic Intergenic -195394 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 184-124 chr4 54831289 54831439 + 2 NA Intergenic Intergenic 173436 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 159-23 chr12 77198107 77198232 + 2 NA Intergenic L1MEc|LINE|L1 -132600 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 242-218 chr21 16774767 16774915 + 2 NA Intergenic Intergenic 184604 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 425-159 chr2 221951949 221952338 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -346004 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 312-308 chr21 39968786 39969046 + 2 NA Intergenic Intergenic 101478 NM_006198 5121 Hs.80296 NM_006198 ENSG00000183036 PCP4 PEP-19 Purkinje cell protein 4 protein-coding 290-90 chr11 116584275 116584421 + 2 NA Intergenic Intergenic -55074 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 328-210 chr17 61181584 61181786 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 186019 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 343-87 chr11 131225183 131225425 + 2 NA Intergenic L1MEc|LINE|L1 -145311 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 555-143 chr4 54578591 54578939 + 2 NA Intergenic Intergenic 28366 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 235-412 chrX 98923176 98923367 + 2 NA Intergenic L2|LINE|L2 -1358736 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 220-273 chr5 13597302 13597469 + 2 NA Intergenic L1MC5a|LINE|L1 347095 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 422-275 chr7 26295003 26295386 + 2 NA intron (NM_001318199, intron 1 of 6) intron (NM_001318199, intron 1 of 6) 2163 NM_001318199 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 257-406 chr8 69473588 69473827 + 2 NA intron (NM_001128204, intron 1 of 21) intron (NM_001128204, intron 1 of 21) 6926 NM_001128204 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 307-75 chr10 130055386 130055549 + 2 NA Intergenic L1MB1|LINE|L1 -50542 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 189-89 chr2 55766410 55766561 + 2 NA Intergenic Intergenic -72641 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 197-112 chr2 188963666 188963824 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -10628 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 707-23 chr14 50305163 50305722 + 2 NA intron (NM_024884, intron 1 of 9) intron (NM_024884, intron 1 of 9) -5496 NR_039726 100616261 NR_039726 ENSG00000264712 MIR4504 - microRNA 4504 ncRNA 235-251 chr4 44307222 44307412 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 141492 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 535-206 chr5 129829198 129829635 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -75049 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 308-291 chr3 52865537 52865691 + 2 NA intron (NM_001198974, intron 1 of 9) THE1A|LTR|ERVL-MaLR -19062 NR_107031 102465866 NR_107031 ENSG00000275789 MIR8064 hsa-mir-8064 microRNA 8064 ncRNA 407-190 chr3 27243818 27244217 + 2 NA intron (NM_199347, intron 24 of 24) intron (NM_199347, intron 24 of 24) -27494 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 294-370 chr5 33604852 33605018 + 2 NA intron (NM_001324512, intron 14 of 21) L1MEi|LINE|L1 164159 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 167-40 chr15 98070007 98070135 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 18682 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 661-83 chr5 145426236 145426802 + 2 NA Intergenic Intergenic 408823 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 429-93 chr14 78413756 78414118 + 2 NA intron (NM_004796, intron 1 of 16) THE1B|LTR|ERVL-MaLR 10218 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 386-297 chr5 107138674 107138995 + 2 NA Intergenic Intergenic -127820 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 298-128 chr14 84588562 84588842 + 2 NA Intergenic L1MC|LINE|L1 -683230 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 640-46 chr16 73965171 73965661 + 2 NA Intergenic MIRb|SINE|MIR 250105 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 353-147 chr14 70451696 70451875 + 2 NA promoter-TSS (NM_003813) promoter-TSS (NM_003813) -389 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 189-57 chr14 66249254 66249404 + 2 NA Intergenic Intergenic -237042 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 347-287 chr22 27697460 27697636 + 2 NA Intergenic L2c|LINE|L2 104208 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 236-177 chr2 95235773 95235936 + 2 NA Intergenic Intergenic -38595 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 400-292 chr5 114964267 114964519 + 2 NA Intergenic L1PREC2|LINE|L1 -190980 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 378-187 chr18 5764793 5765153 + 2 NA intron (NR_038839, intron 2 of 4) AluJr|SINE|Alu 16154 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 470-161 chr21 19967297 19967685 + 2 NA Intergenic L1ME3A|LINE|L1 -67736 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 343-96 chr12 13405382 13405714 + 2 NA Intergenic Intergenic -28803 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 340-433 chr5 23625534 23625725 + 2 NA Intergenic Intergenic 117974 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 296-397 chr6 50502896 50503120 + 2 NA Intergenic L1MA4A|LINE|L1 -210536 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 536-230 chr8 85908207 85908607 + 2 NA Intergenic Intergenic -80465 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 213-17 chr1 188284598 188284759 + 2 NA Intergenic Intergenic 841050 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 293-47 chr10 106311078 106311294 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 171021 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 532-118 chr2 67304891 67305243 + 2 NA Intergenic Intergenic -89748 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 600-31 chr12 118323830 118324329 + 2 NA intron (NM_001346490, intron 1 of 21) HAL1|LINE|L1 35626 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 289-145 chr14 99057110 99057265 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 215010 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 228-137 chr17 74510745 74510960 + 2 NA Intergenic L1M1|LINE|L1 20623 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 252-238 chr21 27228319 27228536 + 2 NA Intergenic Intergenic -261339 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 253-46 chr10 18498522 18498745 + 2 NA intron (NM_201593, intron 4 of 13) intron (NM_201593, intron 4 of 13) 98058 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 264-81 chr11 114010198 114010390 + 2 NA Intergenic L1MB7|LINE|L1 32794 NM_001161772 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 453-96 chr18 3930057 3930402 + 2 NA intron (NM_001242761, intron 3 of 11) L1M5|LINE|L1 -32124 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 534-154 chr22 32715295 32715658 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -85340 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 322-83 chr11 28723453 28723703 + 2 NA Intergenic Intergenic -246030 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 335-172 chr15 60304023 60304326 + 2 NA Intergenic MER54A|LTR|ERVL 93812 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 112-53 chr9 18329650 18329728 + 2 NA Intergenic Intergenic -144464 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 441-36 chr10 130723223 130723584 + 2 NA Intergenic MER4D1|LTR|ERV1 239265 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 141-21 chr13 112167848 112167958 + 2 NA Intergenic Intergenic -7193 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 368-21 chr1 113211496 113211742 + 2 NA Intergenic Intergenic -5366 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 546-228 chr7 141940939 141941268 + 2 NA intron (NM_001301167, intron 3 of 5) L1MA3|LINE|L1 5871 NM_013252 23601 Hs.446235 NM_013252 ENSG00000258227 CLEC5A CLECSF5|MDL-1|MDL1 C-type lectin domain containing 5A protein-coding 341-211 chr18 70917884 70918065 + 2 NA Intergenic MER110-int|LTR|ERV1 -267020 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 472-274 chr6 74506470 74506866 + 2 NA intron (NR_110856, intron 2 of 3) Tigger2a|DNA|TcMar-Tigger 437217 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 317-284 chr21 29623407 29623587 + 2 NA intron (NM_000830, intron 7 of 16) MIRb|SINE|MIR 27457 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 218-265 chr5 46117587 46117770 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -421298 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 483-35 chr11 29647255 29647732 + 2 NA Intergenic MIRb|SINE|MIR 28691 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 312-460 chr6 126233933 126234156 + 2 NA Intergenic Intergenic -105745 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 265-398 chr8 117236691 117236883 + 2 NA Intergenic L2b|LINE|L2 101792 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 352-576 chrX 75006885 75007189 + 2 NA Intergenic L1MA1|LINE|L1 -81585 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 322-260 chr2 114361266 114361432 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -81292 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 367-117 chr13 88518796 88519145 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -21859 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 171-113 chr6 84485334 84485499 + 2 NA Intergenic L1MB7|LINE|L1 -10487 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 323-150 chr14 71793301 71793621 + 2 NA Intergenic L1MB8|LINE|L1 -138710 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 293-245 chr22 34799862 34800111 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 197930 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 497-88 chr16 76723718 76724102 + 2 NA Intergenic Intergenic 88912 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 501-70 chr14 82729273 82729706 + 2 NA Intergenic Intergenic 86857 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 168-53 chr2 51577657 51577795 + 2 NA intron (NR_135237, intron 5 of 10) MER2|DNA|TcMar-Tigger 545125 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 254-343 chr6 45396840 45397063 + 2 NA intron (NM_001015051, intron 2 of 7) L1MB8|LINE|L1 -19017 NM_001350324 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 225-67 chr12 9214055 9214237 + 2 NA Intergenic L1MB7|LINE|L1 -5751 NM_002864 5858 Hs.707491 NM_002864 ENSG00000126838 PZP CPAMD6 PZP alpha-2-macroglobulin like protein-coding 502-268 chr8 103571925 103572351 + 2 NA intron (NM_001348497, intron 1 of 22) LTR12_|LTR|ERV1 -70228 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 261-115 chr14 99244984 99245219 + 2 NA intron (NM_001282237, intron 2 of 3) intron (NM_001282237, intron 2 of 3) 27096 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 523-62 chr12 16798078 16798501 + 2 NA Intergenic HAL1|LINE|L1 -190075 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 295-209 chr2 52722668 52722953 + 2 NA Intergenic MamRep605|LTR?|LTR? -20195 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 259-22 chr1 173646183 173646375 + 2 NA intron (NM_198493, intron 3 of 5) L1ME3A|LINE|L1 10941 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 428-129 chr2 83410924 83411228 + 2 NA Intergenic Intergenic -111738 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 299-234 chr2 170536057 170536324 + 2 NA intron (NR_045682, intron 31 of 35) intron (NR_045682, intron 31 of 35) 178377 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 493-180 chr20 39712868 39713186 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -291434 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 396-211 chr3 25895582 25895864 + 2 NA Intergenic L2a|LINE|L2 -22028 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 271-4 chr1 25163871 25164049 + 2 NA Intergenic Intergenic 68542 NM_207170 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 519-151 chr3 132884252 132884655 + 2 NA Intergenic L1MA3|LINE|L1 -153835 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 254-455 chrX 141134945 141135141 + 2 NA Intergenic Intergenic -16907 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 468-155 chr2 119055812 119056218 + 2 NA Intergenic Intergenic 102736 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 306-309 chr3 61639979 61640159 + 2 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 78498 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 290-410 chr7 23605173 23605424 + 2 NA intron (NM_138771, intron 2 of 3) L2b|LINE|L2 7916 NM_138771 90693 Hs.232296 NM_138771 ENSG00000169193 CCDC126 - coiled-coil domain containing 126 protein-coding 512-154 chr22 23550729 23551159 + 2 NA Intergenic (CATC)n|Simple_repeat|Simple_repeat 12842 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 ncRNA 354-226 chr2 139137577 139137870 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 240399 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 398-328 chr7 62712935 62713281 + 2 NA Intergenic ALR/Alpha|Satellite|centr 590948 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 324-113 chr12 21009153 21009433 + 2 NA intron (NM_001371097, intron 13 of 15) intron (NM_001371097, intron 13 of 15) -6403 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 308 chr1 3252669 3252963 + 2 NA intron (NM_022114, intron 3 of 16) intron (NM_022114, intron 3 of 16) 124841 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 323-599 chrX 99693229 99693490 + 2 NA Intergenic Intergenic 716914 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 311-98 chr12 26772722 26772962 + 2 NA intron (NM_002223, intron 2 of 56) L1PA8|LINE|L1 60352 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 372-463 chr7 79037304 79037642 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 28485 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 341-349 chr3 146517210 146517390 + 2 NA intron (NM_001363872, intron 6 of 7) intron (NM_001363872, intron 6 of 7) -21309 NM_001199979 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 378-381 chr6 99837492 99837815 + 2 NA Intergenic L1ME2|LINE|L1 -156385 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 339-302 chr2 224732064 224732274 + 2 NA Intergenic Intergenic -146772 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 503-5 chr1 31361246 31361574 + 2 NA intron (NM_001282571, intron 6 of 6) MIRb|SINE|MIR 11666 NM_004102 2170 Hs.576372 NM_004102 ENSG00000121769 FABP3 FABP11|H-FABP|M-FABP|MDGI|O-FABP fatty acid binding protein 3 protein-coding 326-435 chr5 154227202 154227398 + 2 NA intron (NM_198321, intron 1 of 11) L1ME2|LINE|L1 36567 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 250-417 chr8 31242866 31243070 + 2 NA Intergenic Intergenic -209612 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 443-85 chr13 103261599 103261920 + 2 NA Intergenic L1M2|LINE|L1 -163441 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 327-36 chr10 4042177 4042417 + 2 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR -9429 NR_120632 101927964 Hs.737041 NR_120632 ENSG00000236990 LOC101927964 - uncharacterized LOC101927964 ncRNA 422-195 chr3 146673589 146673978 + 2 NA Intergenic L1ME3|LINE|L1 -67567 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 192-116 chr20 18634319 18634467 + 2 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) 46339 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 330-551 chr9 69641216 69641476 + 2 NA intron (NM_001163, intron 1 of 12) L1M5|LINE|L1 31025 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 245-128 chr14 70337390 70337551 + 2 NA intron (NM_001202549, intron 3 of 4) L1MEg|LINE|L1 22213 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 204-26 chr10 36045794 36045966 + 2 NA Intergenic L1MB8|LINE|L1 267578 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 545-165 chr4 98003857 98004209 + 2 NA intron (NM_174952, intron 5 of 10) L1MA9|LINE|L1 139443 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 570-133 chr3 35960295 35960717 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 216030 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 326-155 chr14 80147413 80147698 + 2 NA Intergenic Intergenic -63864 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 168-121 chr8 120290684 120290792 + 2 NA intron (NM_021110, intron 34 of 47) intron (NM_021110, intron 34 of 47) 154412 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 346-29 chr1 185311704 185311962 + 2 NA intron (NM_006469, intron 1 of 14) L2c|LINE|L2 5410 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 217-268 chr4 93446956 93447116 + 2 NA intron (NM_001286838, intron 9 of 14) intron (NM_001286838, intron 9 of 14) -381717 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 361-62 chr10 126607750 126608010 + 2 NA intron (NM_001350922, intron 2 of 8) L1MB3|LINE|L1 62630 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 269-297 chr4 156731079 156731250 + 2 NA Intergenic L1MDa|LINE|L1 240635 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 511-170 chr3 65691896 65692287 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -201725 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 239-418 chr8 125783521 125783704 + 2 NA Intergenic L1ME1|LINE|L1 167585 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 240-140 chr14 68290225 68290399 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 338475 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 185-207 chr8 133615739 133615831 + 2 NA Intergenic L1MEg|LINE|L1 -43898 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 202-184 chr4 33378030 33378178 + 2 NA Intergenic Intergenic 661789 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 290-394 chr6 120666998 120667208 + 2 NA Intergenic L1PA12|LINE|L1 651924 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 255-234 chr20 55738355 55738561 + 2 NA Intergenic L1PB3|LINE|L1 267061 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 391-10 chr1 76292196 76292422 + 2 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 217563 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 602-7 chr1 231874997 231875439 + 2 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -50616 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 739-48 chr3 94830575 94831143 + 2 NA Intergenic Intergenic -107404 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 222-393 chrX 70120794 70120923 + 2 NA Intergenic Intergenic -12589 NM_001370193 3476 Hs.496267 NM_001551 ENSG00000089289 IGBP1 ALPHA-4|IBP1 immunoglobulin binding protein 1 protein-coding 650-32 chr14 76569318 76569892 + 2 NA Intergenic L1MEd|LINE|L1 -191863 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 356-150 chr14 70116808 70117135 + 2 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -36754 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 133-28 chr16 59888227 59888322 + 2 NA intron (NR_110917, intron 1 of 3) ERV3-16A3_I-int|LTR|ERVL 32921 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 218-52 chr11 56952887 56953027 + 2 NA Intergenic L1PA16|LINE|L1 -35957 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 678-42 chr17 73266390 73267036 + 2 NA Intergenic Intergenic -4833 NM_001129885 642843 Hs.534707 NM_001129885 ENSG00000187959 CPSF4L - cleavage and polyadenylation specific factor 4 like protein-coding 219-68 chr12 19011047 19011200 + 2 NA Intergenic Intergenic -118610 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 568-91 chr19 30087836 30088208 + 2 NA Intergenic Intergenic 145783 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 321-544 chr8 46315867 46316043 + 2 NA Intergenic ALR/Alpha|Satellite|centr 301688 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 261-38 chr10 59023160 59023386 + 2 NA Intergenic Intergenic 23755 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 302-46 chr10 49265152 49265313 + 2 NA Intergenic Intergenic 33661 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 255-46 chr11 10030253 10030476 + 2 NA intron (NM_030962, intron 4 of 39) intron (NM_030962, intron 4 of 39) 191222 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 321-239 chr17 73925271 73925435 + 2 NA Intergenic AluJo|SINE|Alu -96816 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 313-16 chr1 95785647 95785867 + 2 NA Intergenic HAL1ME|LINE|L1 -206311 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 233-40 chr10 58152420 58152618 + 2 NA Intergenic Intergenic 115375 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 346-127 chr14 29533059 29533343 + 2 NA Intergenic L1PB4|LINE|L1 393895 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 280-458 chrX 133683005 133683245 + 2 NA intron (NM_001164619, intron 4 of 6) intron (NM_001164619, intron 4 of 6) -214318 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 327-265 chr2 99994514 99994788 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 110932 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 227-274 chr5 17346873 17347056 + 2 NA Intergenic Intergenic 40346 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 190-190 chr9 3543584 3543718 + 2 NA Intergenic L1ME1|LINE|L1 -17650 NM_134428 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 352-249 chr2 129467411 129467675 + 2 NA Intergenic Intergenic -193652 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 424-161 chr20 47102526 47102788 + 2 NA intron (NM_172110, intron 9 of 13) intron (NM_172110, intron 9 of 13) -64310 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 260-160 chr16 24260913 24261092 + 2 NA intron (NM_006539, intron 1 of 3) MIR3|SINE|MIR 5449 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 609-120 chr6 161990497 161991020 + 2 NA intron (NM_013988, intron 2 of 8) L1M2|LINE|L1 519781 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 232-182 chr2 118367416 118367629 + 2 NA Intergenic Intergenic -181136 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 500-134 chr2 83920954 83921370 + 2 NA Intergenic Intergenic -369520 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 258-364 chr7 33882833 33883049 + 2 NA Intergenic Intergenic -21974 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 309-479 chr6 68671572 68671779 + 2 NA intron (NM_001704, intron 3 of 31) L1MA1|LINE|L1 36393 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 312-366 chr4 40242437 40242610 + 2 NA intron (NM_001278359, intron 2 of 3) MIRb|SINE|MIR 45492 NM_004310 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 302-327 chr4 77293358 77293605 + 2 NA Intergenic Intergenic 136274 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 362-48 chr10 18807574 18807765 + 2 NA Intergenic Intergenic 148238 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 416-147 chr18 36703540 36703804 + 2 NA intron (NM_001281740, intron 17 of 28) intron (NM_001281740, intron 17 of 28) -40254 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 312-231 chr2 47647935 47648124 + 2 NA Intergenic Intergenic -77698 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 292-462 chr9 38439225 38439442 + 2 NA Intergenic L2|LINE|L2 -14879 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 185-182 chr6 64307347 64307469 + 2 NA intron (NM_001292009, intron 29 of 43) L1MA9|LINE|L1 500572 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 268-149 chr17 58911293 58911466 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 155510 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 299-148 chr15 46624736 46624924 + 2 NA Intergenic L1PA15|LINE|L1 -559259 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 365-159 chr18 1841991 1842309 + 2 NA Intergenic Intergenic -482521 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 258-268 chr3 128394434 128394610 + 2 NA intron (NM_021937, intron 6 of 6) intron (NM_021937, intron 6 of 6) -69072 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 307-380 chr5 41985613 41985776 + 2 NA Intergenic MIRb|SINE|MIR 60413 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 222-173 chr2 54798839 54799018 + 2 NA intron (NM_001039753, intron 1 of 40) L1M5|LINE|L1 73916 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 462-224 chr5 41932557 41932932 + 2 NA intron (NM_012176, intron 3 of 6) L2|LINE|L2 7463 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 237-211 chr20 43952824 43952982 + 2 NA intron (NM_001098798, intron 1 of 7) MLT1D|LTR|ERVL-MaLR 7007 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 643-43 chr16 65398311 65398816 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 177737 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 387-329 chr7 8790768 8791098 + 2 NA Intergenic Intergenic 357324 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 187-30 chr11 58202487 58202622 + 2 NA TTS (NM_001004459) TTS (NM_001004459) 1627 NM_001004459 219958 Hs.553644 NM_001004459 ENSG00000197887 OR1S2 OR11-231 olfactory receptor family 1 subfamily S member 2 protein-coding 228-55 chr11 40895724 40895904 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 563822 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 257-161 chr19 2385626 2385794 + 2 NA Intergenic AluJb|SINE|Alu -4061 NM_182973 360200 Hs.465560 NM_182973 ENSG00000178297 TMPRSS9 - transmembrane serine protease 9 protein-coding 342-21 chr1 98506743 98507042 + 2 NA Intergenic L1MA4|LINE|L1 -154829 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 404-38 chr10 44501185 44501453 + 2 NA Intergenic L1MB7|LINE|L1 -116222 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 541-126 chr2 138594898 138595402 + 2 NA Intergenic AluSg|SINE|Alu 93380 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 493-71 chr13 86888976 86889291 + 2 NA Intergenic L1ME3A|LINE|L1 -22787 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 225-350 chr8 70290636 70290796 + 2 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 112674 NM_001321707 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 263-24 chr1 182797950 182798169 + 2 NA intron (NM_001200056, intron 3 of 12) MIRb|SINE|MIR 8286 NM_001200056 80896 Hs.496969 NM_030769 ENSG00000135838 NPL C112|C1orf13|NAL|NPL1 N-acetylneuraminate pyruvate lyase protein-coding 271-345 chr5 54856800 54857004 + 2 NA Intergenic Intergenic -112644 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 189-110 chr20 13340235 13340419 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -100640 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 211-210 chr4 90188226 90188390 + 2 NA intron (NM_001145065, intron 1 of 10) intron (NM_001145065, intron 1 of 10) -46723 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 311-218 chr18 64372650 64372956 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -112748 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 351-318 chr3 167770619 167770834 + 2 NA intron (NM_005025, intron 1 of 8) L1MC5|LINE|L1 35003 NM_005025 5274 Hs.478153 NM_005025 ENSG00000163536 SERPINI1 PI12|neuroserpin serpin family I member 1 protein-coding 490-46 chr10 115299191 115299468 + 2 NA intron (NM_207303, intron 15 of 28) intron (NM_207303, intron 15 of 28) 205964 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 340-577 chr9 138103795 138104052 + 2 NA intron (NM_001243812, intron 37 of 45) intron (NM_001243812, intron 37 of 45) -46190 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 218-134 chr18 26349086 26349273 + 2 NA intron (NM_005640, intron 13 of 14) L1PA16|LINE|L1 -73816 NR_110762 100506787 Hs.734746 NR_110762 LINC01543 - long intergenic non-protein coding RNA 1543 ncRNA 332-334 chr3 99398446 99398698 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -240022 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 231-193 chr20 56729551 56729770 + 2 NA Intergenic Intergenic 100354 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 352-516 chr8 16550701 16550966 + 2 NA Intergenic Intergenic -358042 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 281-464 chr9 119945639 119945848 + 2 NA Intergenic Intergenic 10683 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 292-134 chr14 44062109 44062369 + 2 NA Intergenic L1MA9|LINE|L1 445044 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 340-375 chr3 134397848 134398136 + 2 NA Intergenic L1ME1|LINE|L1 -22575 NM_001278683 51421 Hs.426312 NM_016201 ENSG00000114019 AMOTL2 LCCP angiomotin like 2 protein-coding 333-61 chr10 75795862 75796119 + 2 NA intron (NM_032024, intron 1 of 5) L1M5|LINE|L1 13229 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 328-511 chr6 136916260 136916470 + 2 NA Intergenic Intergenic -5936 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 341-319 chr22 49513371 49513578 + 2 NA intron (NR_110523, intron 1 of 4) LTR8A|LTR|ERV1 29992 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 203-189 chr5 136554321 136554496 + 2 NA Intergenic L1M2a|LINE|L1 -188932 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 366-414 chr7 70899179 70899470 + 2 NA Intergenic L1MD1|LINE|L1 -232820 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 452-94 chr15 91124467 91124775 + 2 NA intron (NM_001323039, intron 1 of 12) MLT1B|LTR|ERVL-MaLR 22825 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 457-149 chr21 40981714 40982076 + 2 NA Intergenic L1MCa|LINE|L1 -134737 NR_073202 1826 Hs.160418 NM_001389 ENSG00000171587 DSCAM CHD2|CHD2-42|CHD2-52 DS cell adhesion molecule protein-coding 363-203 chr2 18806548 18806756 + 2 NA Intergenic L1MEc|LINE|L1 -217072 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 190-15 chr10 48738985 48739101 + 2 NA intron (NM_020945, intron 11 of 61) intron (NM_020945, intron 11 of 61) 53580 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 328-48 chr10 22221006 22221286 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -11163 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 335-496 chr7 35670586 35670829 + 2 NA intron (NM_022373, intron 3 of 8) intron (NM_022373, intron 3 of 8) 24428 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 420-149 chr2 125661528 125661889 + 2 NA Intergenic Intergenic 456277 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 428-212 chr4 75414902 75415278 + 2 NA Intergenic MIRb|SINE|MIR 61014 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 185-176 chr5 167202959 167203099 + 2 NA intron (NM_001122679, intron 1 of 29) MIRb|SINE|MIR -34628 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 196-108 chr19 40514075 40514204 + 2 NA intron (NM_020971, intron 14 of 35) intron (NM_020971, intron 14 of 35) -16352 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 553-116 chr2 74044391 74044846 + 2 NA intron (NM_001287491, intron 3 of 11) Tigger5|DNA|TcMar-Tigger 41926 NM_001366022 200424 Hs.208546 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 530-47 chr11 125762022 125762405 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 15934 NM_138294 160065 Hs.148565 NM_138294 ENSG00000171053 PATE1 PATE prostate and testis expressed 1 protein-coding 366-350 chr5 118352195 118352518 + 2 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 69782 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 382-171 chr2 13665173 13665467 + 2 NA Intergenic L1PREC2|LINE|L1 -658307 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 242-61 chr11 92626758 92626928 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 274747 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 270-388 chr8 88699975 88700223 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -372616 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 222-203 chr2 228792504 228792690 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -181202 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 133-18 chr12 61865394 61865498 + 2 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 327393 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 259-77 chr11 92298500 92298726 + 2 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) -53483 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 273-206 chr2 27575486 27575666 + 2 NA promoter-TSS (NM_032266) promoter-TSS (NM_032266) -946 NM_032266 84226 Hs.131021 NM_032266 ENSG00000221843 C2orf16 - chromosome 2 open reading frame 16 protein-coding 294-313 chr3 168927374 168927622 + 2 NA Intergenic Intergenic 25553 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 277-249 chr3 30117741 30117895 + 2 NA Intergenic Intergenic -183662 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 433-130 chr2 55749257 55749507 + 2 NA Intergenic L1PA11|LINE|L1 -55538 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 314-13 chr1 69330026 69330302 + 2 NA Intergenic L1M2|LINE|L1 -103091 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 327-43 chr10 51050052 51050301 + 2 NA intron (NM_001098512, intron 1 of 17) L1MB1|LINE|L1 18376 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 118-29 chr2 204677213 204677312 + 2 NA intron (NM_205863, intron 1 of 21) MamRep137|DNA|TcMar-Tigger 131787 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 318-234 chr19 34046520 34046775 + 2 NA Intergenic L1MEf|LINE|L1 -125857 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 305-454 chr5 150983006 150983246 + 2 NA Intergenic L1M4a2|LINE|L1 -36542 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 427-151 chr3 3399268 3399557 + 2 NA Intergenic L1PA15|LINE|L1 -219695 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 401-289 chr6 115471085 115471394 + 2 NA Intergenic Intergenic 172596 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 216-185 chr2 188747947 188748105 + 2 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 42097 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 408-228 chr4 41621205 41621482 + 2 NA intron (NM_001330672, intron 7 of 31) intron (NM_001330672, intron 7 of 31) 8441 NM_001330983 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 328-86 chr11 62020908 62021110 + 2 NA Intergenic Intergenic -53375 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 321-232 chr17 57665399 57665650 + 2 NA intron (NM_138962, intron 11 of 13) intron (NM_138962, intron 11 of 13) -57112 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 183-94 chr3 97236287 97236418 + 2 NA intron (NM_001080448, intron 4 of 17) intron (NM_001080448, intron 4 of 17) -203255 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 265-306 chr5 67359111 67359313 + 2 NA Intergenic L2c|LINE|L2 -162413 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 383-42 chr11 2619919 2620200 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 79939 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 327-269 chr2 134014811 134015026 + 2 NA Intergenic Intergenic -105017 NM_001371457 728-93 chr7 49964119 49964588 + 2 NA intron (NM_001159878, intron 7 of 7) L1MD|LINE|L1 128893 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 165-112 chr6 120077158 120077285 + 2 NA Intergenic L1MEd|LINE|L1 62042 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 463-254 chr6 67930490 67930826 + 2 NA Intergenic Intergenic -124693 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 289-170 chr16 68591693 68591881 + 2 NA Intergenic L1MC4|LINE|L1 52496 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 516-131 chr2 121220033 121220489 + 2 NA 3' UTR (NM_014553, exon 15 of 15) 3' UTR (NM_014553, exon 15 of 15) 64941 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 299-500 chrX 81759887 81760060 + 2 NA Intergenic L1PA11|LINE|L1 557871 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 214-261 chr5 42292996 42293169 + 2 NA Intergenic Intergenic -117737 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 279-356 chr6 39334695 39334862 + 2 NA 3' UTR (NM_145027, exon 23 of 23) 3' UTR (NM_145027, exon 23 of 23) -11810 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 148-58 chr3 171529970 171530084 + 2 NA Intergenic HERV16-int|LTR|ERVL -69619 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 303-157 chr16 35171565 35171835 + 2 NA Intergenic Intergenic -1309 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 247-439 chrUn_KI270519v1 59072 59231 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 339-539 chr7 92121973 92122290 + 2 NA intron (NM_000786, intron 7 of 9) L1M4|LINE|L1 12346 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 324-278 chr2 123643633 123643826 + 2 NA Intergenic L1MD2|LINE|L1 381445 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 398-189 chr20 40371951 40372274 + 2 NA Intergenic L2a|LINE|L2 317124 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 365-397 chr8 79550757 79551018 + 2 NA Intergenic L1MEg|LINE|L1 -60230 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 413-173 chr21 19823006 19823305 + 2 NA Intergenic Intergenic 76600 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 294-322 chr4 32288467 32288618 + 2 NA Intergenic Intergenic -62496 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 459-299 chr8 89045953 89046321 + 2 NA Intergenic Intergenic 711574 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 389-243 chr3 126627572 126627789 + 2 NA intron (NM_001173513, intron 10 of 14) L1M5|LINE|L1 27444 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TR2IT1|TRXR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1 thioredoxin reductase 3 protein-coding 210-103 chr18 8233549 8233699 + 2 NA intron (NM_002845, intron 14 of 30) L1MC1|LINE|L1 133410 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 213-111 chr16 79528949 79529085 + 2 NA Intergenic Intergenic 71720 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 436-83 chr14 48808658 48809015 + 2 NA Intergenic L2c|LINE|L2 777544 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 265-367 chr7 97696752 97696948 + 2 NA Intergenic Intergenic -35236 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 286-56 chr10 126814270 126814447 + 2 NA Intergenic Intergenic -91051 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 443-229 chr4 157021304 157021684 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -49695 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 342-438 chr6 393650 393968 + 2 NA intron (NR_046000, intron 2 of 9) intron (NR_046000, intron 2 of 9) 2057 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 610-48 chr14 47529587 47530026 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 145148 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 237-98 chr14 46134403 46134634 + 2 NA intron (NR_102702, intron 1 of 3) L2|LINE|L2 70359 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 357-209 chr2 106531296 106531636 + 2 NA intron (NM_001368307, intron 5 of 5) ERVL-E-int|LTR|ERVL 44102 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 453-52 chr12 37732493 37732854 + 2 NA Intergenic ALR/Alpha|Satellite|centr -584101 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 280-171 chr18 12530025 12530209 + 2 NA intron (NM_020148, intron 4 of 15) intron (NM_020148, intron 4 of 15) 97343 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 294-246 chr2 194030125 194030379 + 2 NA Intergenic L1PB1|LINE|L1 -314017 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 289-25 chr1 174530991 174531210 + 2 NA intron (NM_001366446, intron 13 of 25) L1ME3|LINE|L1 83136 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 512-289 chr9 25650650 25651042 + 2 NA Intergenic L3b|LINE|CR1 28012 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 333-302 chr20 16303965 16304226 + 2 NA intron (NM_024704, intron 25 of 25) intron (NM_024704, intron 25 of 25) 269353 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 322-377 chr4 77464871 77465057 + 2 NA Intergenic Intergenic -46789 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 828-21 chr17 52530594 52531161 + 2 NA intron (NR_146898, intron 1 of 3) L1PA4|LINE|L1 140355 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 220-298 chr5 112442073 112442222 + 2 NA Intergenic L1PA8|LINE|L1 22564 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 315-494 chr8 128336284 128336454 + 2 NA Intergenic Intergenic 186253 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 243-426 chr7 93179162 93179326 + 2 NA Intergenic Intergenic -30859 NM_152703 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 811-48 chr8 110110923 110111480 + 2 NA Intergenic Intergenic -135430 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 222-179 chr2 102572418 102572587 + 2 NA Intergenic L1M5|LINE|L1 -47051 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 282-266 chr20 51228293 51228495 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -205287 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 345-332 chr22 24224689 24225002 + 2 NA intron (NM_001302464, intron 10 of 11) intron (NM_001302464, intron 10 of 11) 20297 NM_001099781 2687 Hs.437156 NM_004121 ENSG00000099998 GGT5 GGL|GGT 5|GGT-REL|GGTLA1 gamma-glutamyltransferase 5 protein-coding 360-126 chr14 66251213 66251423 + 2 NA Intergenic L2c|LINE|L2 -235053 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 465-275 chr7 71533714 71534049 + 2 NA intron (NM_022479, intron 5 of 10) LOR1a|LTR|ERV1 -226111 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 267-49 chr10 62680508 62680746 + 2 NA Intergenic AluSz|SINE|Alu -124093 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 370-88 chr11 63139220 63139483 + 2 NA intron (NM_173586, intron 1 of 3) HUERS-P1-int|LTR|ERV1 4870 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 185-62 chr14 84376086 84376211 + 2 NA Intergenic Intergenic -895784 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 346-267 chr2 183105538 183105783 + 2 NA Intergenic L1M1|LINE|L1 -11830 NM_001287584 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 193-96 chr2 28740834 28741002 + 2 NA Intergenic Intergenic -4713 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 392-61 chr12 34560832 34561196 + 2 NA Intergenic ALR/Alpha|Satellite|centr 538518 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 332-333 chr3 95413158 95413426 + 2 NA Intergenic L1MB3|LINE|L1 269901 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 458-260 chr8 92601201 92601632 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 54078 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 320-144 chr14 42662555 42662854 + 2 NA Intergenic Intergenic 1055848 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 425-40 chr10 58730974 58731299 + 2 NA intron (NM_001080512, intron 3 of 20) MSTA-int|LTR|ERVL-MaLR 16121 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 341-13 chr1 61348547 61348806 + 2 NA intron (NM_001134673, intron 4 of 10) intron (NM_001134673, intron 4 of 10) -95158 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 283-433 chr8 53487949 53488169 + 2 NA Intergenic HERVL18-int|LTR|ERVL 35906 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 198-64 chr14 61403858 61403989 + 2 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 82480 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 347-114 chr13 99777632 99777974 + 2 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) -48802 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 287-309 chr5 27869936 27870202 + 2 NA Intergenic Intergenic 397777 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 280-207 chr2 123492700 123492903 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -419320 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 130-5 chr1 169639536 169639655 + 2 NA Intergenic Intergenic -9471 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 254-37 chr10 33980517 33980704 + 2 NA Intergenic Intergenic -207930 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 327-499 chr8 114864868 114865077 + 2 NA Intergenic L1MC1|LINE|L1 803041 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 239-39 chr10 80771417 80771588 + 2 NA Intergenic Intergenic 121705 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 267-257 chr3 75051929 75052136 + 2 NA Intergenic Intergenic -162444 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 252-406 chr7 111793355 111793540 + 2 NA intron (NM_001363540, intron 30 of 52) intron (NM_001363540, intron 30 of 52) -15058 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 421-15 chr1 183743908 183744284 + 2 NA intron (NM_001297669, intron 3 of 18) intron (NM_001297669, intron 3 of 18) -61024 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 329-386 chr3 161163583 161163754 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -57622 NM_015938 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 327-300 chr20 52655722 52655911 + 2 NA Intergenic Intergenic 34978 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 323-125 chr13 32087508 32087795 + 2 NA intron (NM_023037, intron 2 of 60) intron (NM_023037, intron 2 of 60) 55877 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 743-72 chr6 88291604 88292087 + 2 NA Intergenic L1MDa|LINE|L1 -124496 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 481-269 chr6 146627316 146627744 + 2 NA intron (NM_024694, intron 1 of 35) L1MEc|LINE|L1 28558 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 300-197 chr2 76488964 76489173 + 2 NA Intergenic AluSc8|SINE|Alu -496897 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 252-354 chr6 9665683 9665854 + 2 NA Intergenic Intergenic -738734 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 299-111 chr12 90401831 90402100 + 2 NA Intergenic L1MB2|LINE|L1 108647 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 229-146 chr17 53236990 53237119 + 2 NA Intergenic Intergenic 251549 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 283-424 chr7 82849508 82849754 + 2 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 313253 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 455-237 chr6 44025467 44025883 + 2 NA intron (NR_125864, intron 1 of 4) MIRb|SINE|MIR -22025 NR_125865 101929705 Hs.670378 NR_125864 ENSG00000237686 LOC101929705 - uncharacterized LOC101929705 ncRNA 266-48 chr10 81868692 81868899 + 2 NA Intergenic Intergenic -6399 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 294-12 chr1 152282058 152282248 + 2 NA Intergenic L1PB1|LINE|L1 -31306 NR_103778 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 135-40 chr21 21284279 21284388 + 2 NA exon (NM_001352591, exon 3 of 18) exon (NM_001352591, exon 3 of 18) 137171 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 385-16 chr1 211168914 211169255 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -34936 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 365-386 chr7 126258022 126258355 + 2 NA Intergenic Intergenic 799996 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 208-234 chr6 67624995 67625140 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -430284 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 289-210 chr2 19947318 19947545 + 2 NA intron (NM_001006657, intron 15 of 27) intron (NM_001006657, intron 15 of 27) 42674 NM_001006657 57539 Hs.205427 NM_020779 ENSG00000118965 WDR35 CED2|IFT121|IFTA1|SRTD7 WD repeat domain 35 protein-coding 229-30 chr10 52668356 52668550 + 2 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 86951 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 498-55 chr11 91885383 91885817 + 2 NA Intergenic Intergenic -339434 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 314-392 chr3 134924770 134925019 + 2 NA intron (NM_004441, intron 1 of 15) L1ME1|LINE|L1 129634 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 294-26 chr1 238568241 238568416 + 2 NA Intergenic L1M5|LINE|L1 -82311 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 485-47 chr11 77562196 77562510 + 2 NA Intergenic L1MA3|LINE|L1 -8736 NR_130930 646029 Hs.609654 NM_001039908 LOC646029 - uncharacterized LOC646029 ncRNA 496-13 chr1 84044282 84044771 + 2 NA Intergenic Intergenic -33449 NM_002731 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 471-155 chr21 27685220 27685632 + 2 NA Intergenic L1M4|LINE|L1 -36953 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 251-413 chr9 27997121 27997281 + 2 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -423335 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 390-290 chr5 35216438 35216664 + 2 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 13936 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 339-331 chr21 24583909 24584134 + 2 NA Intergenic Intergenic 155281 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 441-130 chr2 110895949 110896256 + 2 NA intron (NM_001371254, intron 10 of 18) L1MDa|LINE|L1 163529 NM_001371254 495-10 chr1 177597031 177597345 + 2 NA Intergenic Intergenic -103336 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 247-63 chr11 81703608 81703775 + 2 NA Intergenic L1MCb|LINE|L1 187145 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 577-62 chr15 23707018 23707417 + 2 NA Intergenic AluYh3|SINE|Alu -19912 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 287-147 chr15 86545223 86545391 + 2 NA intron (NM_152336, intron 19 of 24) MLT1I|LTR|ERVL-MaLR -228339 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 368-90 chr11 116389092 116389335 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 -250209 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 304-108 chr12 37875424 37875667 + 2 NA Intergenic ALR/Alpha|Satellite|centr -441229 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 302-174 chr17 70303373 70303596 + 2 NA Intergenic L1MCc|LINE|L1 133949 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 537-202 chr5 133327573 133327974 + 2 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 99933 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 242-395 chr8 87252190 87252378 + 2 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 385869 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 187-138 chr5 59675003 59675158 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 28623 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 352-442 chr6 5945507 5945751 + 2 NA Intergenic Intergenic 58415 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 321-362 chr3 15954101 15954346 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 80452 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 218-223 chr3 111834549 111834727 + 2 NA intron (NM_001185106, intron 4 of 4) L1ME3G|LINE|L1 -24542 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 326-191 chr16 73304443 73304758 + 2 NA Intergenic Intergenic -82205 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 184-161 chr7 109184059 109184155 + 2 NA Intergenic Intergenic -299520 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 463-194 chr3 124011035 124011365 + 2 NA Intergenic FAM|SINE|Alu -19030 NR_133919 54763 Hs.567516 NM_017578 ENSG00000065371 ROPN1 CT91|ODF6|RHPNAP1|ROPN1A|ropporin rhophilin associated tail protein 1 protein-coding 333-477 chr5 145429392 145429663 + 2 NA Intergenic L2a|LINE|L2 405815 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 350-322 chr3 117340568 117340845 + 2 NA Intergenic Intergenic 350219 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 316-264 chr2 67630259 67630566 + 2 NA Intergenic Intergenic 195150 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 357-310 chr4 65505655 65505884 + 2 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 163719 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 340-94 chr11 125794968 125795143 + 2 NA Intergenic L1MA2|LINE|L1 6928 NM_001129883 100169851 Hs.131278 NM_001129883 ENSG00000236027 PATE3 HEL-127|PATE-DJ prostate and testis expressed 3 protein-coding 872-48 chr8 8357803 8358522 + 2 NA intron (NR_163138, intron 3 of 6) MER21B|LTR|ERVL 28082 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 421-159 chr2 222362545 222362922 + 2 NA Intergenic (TATTTT)n|Simple_repeat|Simple_repeat 42072 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 494-269 chr7 54871027 54871496 + 2 NA Intergenic L1ME1|LINE|L1 111948 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 193-68 chr15 92550734 92550844 + 2 NA Intergenic L1MB5|LINE|L1 21474 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 297-225 chr2 133379712 133379959 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 113640 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 364-21 chr1 102524688 102524903 + 2 NA Intergenic AluSp|SINE|Alu -527561 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 347-35 chr1 233965962 233966214 + 2 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 61412 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 342-95 chr11 66983654 66983945 + 2 NA Intergenic L2c|LINE|L2 8495 NM_001136485 254439 Hs.232604 NM_001136485 ENSG00000173237 C11orf86 - chromosome 11 open reading frame 86 protein-coding 592-19 chr11 2629965 2630315 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 69858 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 253-118 chr13 71431606 71431785 + 2 NA Intergenic Intergenic 416554 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 316-94 chr11 36777815 36778076 + 2 NA Intergenic MIRc|SINE|MIR -179666 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 280-220 chr2 163163697 163163949 + 2 NA Intergenic Intergenic -325056 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 694-70 chr2 193456992 193457466 + 2 NA Intergenic Intergenic 707384 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 337-530 chr8 9984198 9984481 + 2 NA Intergenic L1ME4c|LINE|L1 -69953 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 317-206 chr19 29454735 29454897 + 2 NA intron (NR_040029, intron 1 of 9) ERV3-16A3_I-int|LTR|ERVL 70936 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 340-204 chr17 61625546 61625755 + 2 NA Intergenic L1MD|LINE|L1 -34431 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 317-224 chr2 52703536 52703760 + 2 NA Intergenic Intergenic -1033 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 265 chr1 14878895 14879142 + 2 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -45111 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 229-369 chr7 111645921 111646133 + 2 NA Intergenic Intergenic -83510 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 327-28 chr1 227351010 227351253 + 2 NA Intergenic Intergenic -32639 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 369-165 chr18 48482660 48482899 + 2 NA Intergenic L1MC5|LINE|L1 -56252 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 348-426 chr5 118683690 118683920 + 2 NA Intergenic MIRb|SINE|MIR 87617 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 327-458 chr7 54963776 54964024 + 2 NA Intergenic MLT2B4|LTR|ERVL -55117 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 314-420 chr4 54992287 54992498 + 2 NA Intergenic L1MA4A|LINE|L1 133203 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 333-491 chr6 9268659 9268932 + 2 NA Intergenic Intergenic 616586 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 459-51 chr11 57861000 57861357 + 2 NA Intergenic Intergenic 99376 NM_001206884 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 232-415 chrX 142624412 142624639 + 2 NA Intergenic Intergenic -401403 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 334-438 chr5 130256465 130256764 + 2 NA Intergenic L1MA4|LINE|L1 352149 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 322-486 chr7 42447651 42447851 + 2 NA Intergenic Intergenic -210542 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 405-344 chr9 82233732 82234000 + 2 NA Intergenic L1PA8A|LINE|L1 245094 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 211-245 chr5 120259942 120260053 + 2 NA Intergenic Intergenic -204281 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 336-118 chr12 12456574 12456814 + 2 NA intron (NM_001300742, intron 3 of 3).2 intron (NM_001300742, intron 3 of 3).2 99616 NM_001330356 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 709-86 chr8 49642638 49643078 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -130678 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 370-102 chr11 117856472 117856756 + 2 NA intron (NM_001164832, intron 1 of 8) intron (NM_001164832, intron 1 of 8) 20044 NM_001164836 53826 Hs.744850 NM_022003 ENSG00000137726 FXYD6 - FXYD domain containing ion transport regulator 6 protein-coding 312-7 chr1 48642889 48643194 + 2 NA intron (NM_001323575, intron 8 of 12) MIR|SINE|MIR 133850 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 238-308 chr5 166761894 166762088 + 2 NA Intergenic Intergenic 164379 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 406-60 chr12 48154997 48155247 + 2 NA intron (NM_001319300, intron 1 of 4) intron (NM_001319300, intron 1 of 4) 2393 NM_001319300 140461 Hs.432699 NM_024095 ENSG00000177981 ASB8 PP14212 ankyrin repeat and SOCS box containing 8 protein-coding 473-201 chr4 148473083 148473494 + 2 NA Intergenic Intergenic -28590 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 344-194 chr17_KI270729v1_random 160835 161159 + 2 NA NA Intergenic NA NA 274-102 chr12 107989279 107989502 + 2 NA Intergenic MIR|SINE|MIR -85619 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 159-89 chr7 100111728 100111871 + 2 NA exon (NM_001365001, exon 9 of 15) exon (NM_001365001, exon 9 of 15) 7558 NM_001364999 6878 Hs.489309 NM_005641 ENSG00000106290 TAF6 ALYUS|MGC:8964|TAF(II)70|TAF(II)80|TAF2E|TAFII-70|TAFII-80|TAFII70|TAFII80|TAFII85 TATA-box binding protein associated factor 6 protein-coding 294-22 chr1 213858444 213858690 + 2 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -66182 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 162-14 chr10 21692932 21693029 + 2 NA intron (NM_004641, intron 14 of 23) intron (NM_004641, intron 14 of 23) 158808 NM_001195630 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 361-9 chr1 79275996 79276277 + 2 NA Intergenic L1PA14|LINE|L1 -269406 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 264-113 chr13 70932826 70932982 + 2 NA Intergenic LTR16C|LTR|ERVL -82237 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 278-202 chr2 34001061 34001246 + 2 NA intron (NR_126403, intron 4 of 5) LTR1B0|LTR|ERV1 -66073 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 278-327 chr5 16332927 16333150 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 108064 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 324-517 chr8 26896212 26896511 + 2 NA Intergenic L1M6|LINE|L1 -29083 NM_000680 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 243-474 chr9 81330258 81330421 + 2 NA Intergenic HAL1|LINE|L1 359196 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 497-273 chr8 64177153 64177497 + 2 NA intron (NR_125826, intron 1 of 4) L1MA9|LINE|L1 191233 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 792-24 chr14 89526102 89526649 + 2 NA intron (NM_001085471, intron 1 of 6) L1ME1|LINE|L1 -49841 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 512-196 chr4 105922180 105922571 + 2 NA intron (NM_001184690, intron 3 of 12) intron (NM_001184690, intron 3 of 12) 26904 NM_001184692 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 286-453 chr8 87725975 87726152 + 2 NA Intergenic HAL1|LINE|L1 147952 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 657-46 chr2 35069094 35069548 + 2 NA Intergenic L1PA16|LINE|L1 391764 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 255-167 chr18 6806486 6806704 + 2 NA intron (NM_001366230, intron 1 of 17) L1MEc|LINE|L1 -27890 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 125-34 chr3 22365294 22365393 + 2 NA Intergenic Intergenic 408204 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 461-187 chr4 43573125 43573547 + 2 NA Intergenic Intergenic -80793 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 315-173 chr16 58269439 58269679 + 2 NA intron (NM_014157, intron 7 of 8) L1MC3|LINE|L1 19623 NM_014157 29070 Hs.11614 NM_014157 ENSG00000103021 CCDC113 HSPC065 coiled-coil domain containing 113 protein-coding 310-298 chr21 14181322 14181602 + 2 NA intron (NM_198996, intron 4 of 9) intron (NM_198996, intron 4 of 9) 25487 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 251-87 chr14 33104279 33104417 + 2 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 165469 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 384-136 chr16 48872457 48872801 + 2 NA Intergenic Intergenic -262449 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 221-188 chr3 76304261 76304474 + 2 NA Intergenic Intergenic -518818 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 543-73 chr14 45079749 45080208 + 2 NA Intergenic LTR33|LTR|ERVL -4138 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 188-163 chr5 33721017 33721163 + 2 NA intron (NM_001324512, intron 3 of 21) L1ME3A|LINE|L1 170900 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 375-68 chr11 20331098 20331364 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -32454 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 347-330 chr4 14029045 14029218 + 2 NA Intergenic Intergenic -82837 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 344-72 chr11 13616625 13616878 + 2 NA Intergenic L1PA15|LINE|L1 -51917 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 313-464 chr6 40685451 40685719 + 2 NA Intergenic MIR3|SINE|MIR -98221 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 163-32 chr12 42764169 42764295 + 2 NA Intergenic Intergenic 72016 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 148 chr1 4753413 4753501 + 2 NA intron (NM_018836, intron 2 of 5) (AT)n|Simple_repeat|Simple_repeat 98848 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 239-148 chr18 59612502 59612701 + 2 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 84822 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 371-88 chr12 125030733 125031041 + 2 NA 3' UTR (NM_080626, exon 3 of 3) 3' UTR (NM_080626, exon 3 of 3) -3464 NR_110375 102659353 Hs.596464 NR_110375 ENSG00000280634 THRIL BRI3BP-AS1|BRI3BPAS1|Linc1992|TCONS_00020260 TNF and HNRNPL related immunoregulatory long non-coding RNA ncRNA 289-355 chr4 189323149 189323373 + 2 NA Intergenic Intergenic -336345 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 412-291 chr6 156090422 156090656 + 2 NA Intergenic L1PA10|LINE|L1 143742 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 388-54 chr10 107104345 107104678 + 2 NA intron (NM_001206569, intron 1 of 25) MLT1K|LTR|ERVL-MaLR 60195 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 242-255 chr4 31855175 31855349 + 2 NA Intergenic Intergenic -142117 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 400-65 chr12 2589814 2590148 + 2 NA intron (NM_199460, intron 18 of 49).2 intron (NM_199460, intron 18 of 49).2 82239 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 337-541 chr8 89587295 89587482 + 2 NA Intergenic L1PA14|LINE|L1 170323 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 315-412 chr6 27366705 27367016 + 2 NA intron (NR_024553, intron 3 of 4) L1MEf|LINE|L1 4665 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 545-90 chr17 14441572 14442009 + 2 NA Intergenic Intergenic 138050 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 343-515 chr7 93879441 93879661 + 2 NA Intergenic L1MA9|LINE|L1 11202 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 245-365 chr9 29901477 29901650 + 2 NA Intergenic L1M3|LINE|L1 506891 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 150-55 chr2 180543511 180543622 + 2 NA Intergenic Intergenic -148538 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 527-278 chr8 139688970 139689339 + 2 NA intron (NR_104210, intron 1 of 3) MLT1B|LTR|ERVL-MaLR 13969 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 194-192 chr6 151562364 151562522 + 2 NA intron (NM_025059, intron 5 of 10) L1PA17|LINE|L1 68426 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 311-253 chr2 67468924 67469092 + 2 NA Intergenic Intergenic 71675 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 394-216 chr3 95968290 95968522 + 2 NA Intergenic Intergenic -285213 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 380-61 chr11 20855736 20855969 + 2 NA intron (NM_201551, intron 4 of 18) intron (NM_201551, intron 4 of 18) 186266 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 414-222 chr3 177477141 177477459 + 2 NA intron (NR_047568, intron 1 of 3) MER5B|DNA|hAT-Charlie 35379 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 305-448 chr5 118377529 118377804 + 2 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 95092 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 329-271 chr2 52492561 52492753 + 2 NA Intergenic Intergenic 122009 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 297-389 chr5 164711617 164711850 + 2 NA Intergenic Intergenic 241454 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 513-288 chr8 128496177 128496576 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 68303 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 142-79 chr8 85530468 85530597 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -65617 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 266-30 chr1 248009497 248009697 + 2 NA intron (NM_001304535, intron 1 of 1) L1P3|LINE|L1 -12351 NM_001258284 81466 Hs.742583 NM_001258284 ENSG00000197454 OR2L5 OR2L11|OR2L5P olfactory receptor family 2 subfamily L member 5 protein-coding 289-181 chr17 71049617 71049831 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 152455 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 552-48 chr12 105432656 105433082 + 2 NA Intergenic AluY|SINE|Alu 102178 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 204-54 chr12 30553959 30554129 + 2 NA Intergenic MIR|SINE|MIR 123200 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 247-298 chr4 74291743 74291934 + 2 NA intron (NM_001144978, intron 7 of 7) intron (NM_001144978, intron 7 of 7) -16632 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 141-80 chr7 40614547 40614645 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 365343 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 436-95 chr15 96865916 96866165 + 2 NA Intergenic Intergenic 82605 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 320-488 chr6 66062225 66062441 + 2 NA Intergenic Intergenic 274454 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 230-335 chr6 165115589 165115741 + 2 NA Intergenic Intergenic 193940 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 462-275 chr8 18149034 18149359 + 2 NA Intergenic Intergenic -21271 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 295-95 chr12 25950307 25950491 + 2 NA Intergenic AluJr|SINE|Alu 7186 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 239-413 chr8 110837965 110838142 + 2 NA Intergenic L1MB1|LINE|L1 189380 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 252-447 chr9 37614678 37614871 + 2 NA intron (NM_001371225, intron 1 of 15) MamRep605|LTR?|LTR? 11545 NM_001371225 467-67 chr12 124047964 124048284 + 2 NA intron (NM_001347902, intron 2 of 4) L2a|LINE|L2 74909 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 663-53 chr2 4609586 4610047 + 2 NA Intergenic LTR24C|LTR|ERV1 46406 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 320-287 chr2 172688224 172688439 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -47514 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 245-298 chr6 40301188 40301334 + 2 NA Intergenic Intergenic 54745 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 323-518 chr7 112734951 112735135 + 2 NA Intergenic Intergenic 55350 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 208-89 chr16 78622878 78623051 + 2 NA intron (NM_001291997, intron 7 of 7) MLT1E1A|LTR|ERVL-MaLR 523310 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 349-528 chrX 63553392 63553587 + 2 NA intron (NR_152610, intron 1 of 4) intron (NR_152610, intron 1 of 4) 7606 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 272-163 chr18 11311309 11311539 + 2 NA Intergenic Intergenic -143054 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 221-27 chr1 214479792 214479963 + 2 NA intron (NM_005401, intron 1 of 18) L1ME4a|LINE|L1 71725 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 341-42 chr1 214039450 214039741 + 2 NA 3' UTR (NM_002763, exon 5 of 5) 3' UTR (NM_002763, exon 5 of 5) 51062 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 248-190 chr2 78238795 78238965 + 2 NA intron (NR_110288, intron 1 of 3) Tigger4|DNA|TcMar-Tigger 51851 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 363-136 chr14 55850332 55850517 + 2 NA Intergenic Intergenic -53750 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 212-333 chr8 127331332 127331498 + 2 NA intron (NR_117099, intron 2 of 3) intron (NR_117099, intron 2 of 3) -68984 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 275-287 chr5 33363984 33364248 + 2 NA Intergenic Intergenic -76580 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 356-500 chr9 25628192 25628528 + 2 NA Intergenic Intergenic 50498 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 520-64 chr12 19634190 19634566 + 2 NA Intergenic MER39|LTR|ERV1 193779 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 306-193 chr17 53174825 53175101 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 189458 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 316-352 chr3 88614607 88614846 + 2 NA Intergenic Intergenic 276270 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 251-254 chr3 176140011 176140214 + 2 NA Intergenic L1MC|LINE|L1 -104439 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 657-88 chr7 21651981 21652394 + 2 NA intron (NM_001277115, intron 28 of 81) Tigger6a|DNA|TcMar-Tigger 109148 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 318-206 chr17 55525464 55525651 + 2 NA Intergenic Intergenic -103722 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 300-312 chr4 32749807 32750062 + 2 NA Intergenic Intergenic 398896 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 224-249 chr5 51230263 51230469 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger 152966 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 257-221 chr2 188092304 188092518 + 2 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 195280 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 190-194 chr9 31280981 31281156 + 2 NA Intergenic Intergenic 100422 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 234-82 chr12 127200236 127200466 + 2 NA Intergenic Intergenic 83932 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 852-22 chr2 6832262 6832796 + 2 NA intron (NR_126359, intron 2 of 3) intron (NR_126359, intron 2 of 3) 7935 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 296-56 chr10 77658458 77658655 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -20748 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 343-108 chr12 90065663 90065851 + 2 NA Intergenic Intergenic 118064 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 317-502 chr8 127323372 127323602 + 2 NA intron (NR_117099, intron 2 of 3) MSTB-int|LTR|ERVL-MaLR -76912 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 346-268 chr2 185343623 185343806 + 2 NA Intergenic Intergenic -176642 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 186-52 chr14 75801886 75802019 + 2 NA intron (NM_015072, intron 27 of 31) intron (NM_015072, intron 27 of 31) 140706 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 253-126 chr14 35385846 35386079 + 2 NA Intergenic Intergenic 18792 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 236-208 chr22 33541345 33541503 + 2 NA intron (NM_133642, intron 6 of 14) L1ME4a|LINE|L1 -104755 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 280-362 chr6 144554200 144554400 + 2 NA intron (NM_007124, intron 47 of 73) intron (NM_007124, intron 47 of 73) 148645 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 235-203 chr20 51277253 51277424 + 2 NA Intergenic Intergenic 175639 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 380-114 chr14 32803490 32803844 + 2 NA intron (NM_004274, intron 12 of 13) intron (NM_004274, intron 12 of 13) -135212 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 656-71 chr20 30942585 30943052 + 2 NA Intergenic ALR/Alpha|Satellite|centr -314846 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 594-85 chr20 20171826 20172278 + 2 NA 3' UTR (NM_001167816, exon 13 of 13) 3' UTR (NM_001167816, exon 13 of 13) 115406 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 340-403 chr4 76554909 76555153 + 2 NA intron (NM_020859, intron 1 of 10) MER1A|DNA|hAT-Charlie -18537 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 290-232 chr2 213326916 213327195 + 2 NA intron (NR_047660, intron 4 of 14) intron (NR_047660, intron 4 of 14) 42591 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 555-83 chr2 10984656 10985160 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 72974 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 271-16 chr1 165022948 165023111 + 2 NA Intergenic Intergenic -248388 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 415-13 chr1 114041576 114041841 + 2 NA Intergenic L2a|LINE|L2 62234 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 874-23 chr5 110123027 110123649 + 2 NA Intergenic L1MA2|LINE|L1 240156 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 584-17 chr10 36007409 36007866 + 2 NA Intergenic Intergenic 229335 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 346-199 chr17 71266846 71267099 + 2 NA Intergenic L2a|LINE|L2 -64793 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 296-342 chr4 77014267 77014464 + 2 NA intron (NM_001306147, intron 6 of 11) intron (NM_001306147, intron 6 of 11) 60545 NM_001348133 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 336-490 chr6 62941686 62941907 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 378181 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 274-317 chr5 123910404 123910609 + 2 NA Intergenic Intergenic 365089 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 361-153 chr15 56586447 56586765 + 2 NA Intergenic L1M4|LINE|L1 -121469 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 723-70 chr7 19693488 19694066 + 2 NA Intergenic Intergenic 11659 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 217-366 chr8 94594319 94594473 + 2 NA Intergenic Zaphod3|DNA|hAT-Tip100 -40878 NM_183009 25962 Hs.202238 NM_015496 ENSG00000164944 VIRMA KIAA1429|MSTP054|fSAP121 vir like m6A methyltransferase associated protein-coding 541-46 chr12 52739416 52739723 + 2 NA Intergenic L1MC5|LINE|L1 -36045 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 532-239 chr7 26422668 26423054 + 2 NA intron (NR_148500, intron 2 of 5) intron (NR_148500, intron 2 of 5) -23443 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 356-260 chr2 124932220 124932491 + 2 NA Intergenic Intergenic 907068 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 344-373 chr5 8985088 8985357 + 2 NA Intergenic L1ME1|LINE|L1 68673 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 247-383 chr7 54217339 54217500 + 2 NA Intergenic L1M1|LINE|L1 -113278 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 232-315 chr5 151366224 151366385 + 2 NA Intergenic Intergenic -18745 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 348-211 chr19 39306299 39306527 + 2 NA TTS (NM_020862) TTS (NM_020862) 8923 NM_020862 57622 Hs.97860 NM_020862 ENSG00000128011 LRFN1 SALM2 leucine rich repeat and fibronectin type III domain containing 1 protein-coding 327-159 chr14 87323282 87323566 + 2 NA Intergenic Intergenic 331870 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 372-124 chr12 118463565 118463887 + 2 NA Intergenic L2c|LINE|L2 87171 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 239-243 chr3 74723373 74723583 + 2 NA Intergenic L1MCb|LINE|L1 -202338 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 248-136 chr16 8507839 8508002 + 2 NA Intergenic Intergenic 81918 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 265-323 chr5 144822170 144822393 + 2 NA Intergenic Intergenic 616890 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 257-45 chr10 69667657 69667894 + 2 NA Intergenic Intergenic 37528 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 170-15 chr10 4539105 4539214 + 2 NA Intergenic Intergenic -116997 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 658-75 chr22 28065824 28066201 + 2 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -145400 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 237-238 chr3 70073062 70073261 + 2 NA Intergenic Intergenic 73417 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 344-325 chr3 107668045 107668338 + 2 NA intron (NM_001276286, intron 3 of 16) intron (NM_001276286, intron 3 of 16) 145229 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 231-373 chr9 11280646 11280836 + 2 NA Intergenic Intergenic 667535 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 287-285 chr4 61870080 61870294 + 2 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 291578 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 235-317 chr7 14431332 14431475 + 2 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 410047 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 118-20 chr15 62446777 62446858 + 2 NA Intergenic Intergenic 103788 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 434-188 chr3 94924900 94925213 + 2 NA Intergenic Intergenic -13207 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 402-42 chr11 17677713 17678059 + 2 NA Intergenic L1ME3A|LINE|L1 19053 NR_132279 102723330 Hs.471111 NR_132279 ENSG00000255335 LINC02729 - long intergenic non-protein coding RNA 2729 ncRNA 446-234 chr5 41952722 41953016 + 2 NA Intergenic L1MEf|LINE|L1 27588 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 230-210 chr20 61145253 61145444 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 66284 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 486-35 chr10 78749696 78750033 + 2 NA Intergenic Intergenic 317584 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 365-249 chr22 48933248 48933458 + 2 NA Intergenic AluSx3|SINE|Alu 66583 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 304-407 chr5 23958130 23958291 + 2 NA intron (NR_131245, intron 1 of 4) L1PA10|LINE|L1 6862 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 272-12 chr1 106612852 106613032 + 2 NA Intergenic Intergenic -205297 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 433-89 chr15 44340713 44341035 + 2 NA intron (NM_177974, intron 6 of 8) intron (NM_177974, intron 6 of 8) 52155 NM_177974 113201 Hs.512867 NM_138423 ENSG00000166734 CASC4 H63 cancer susceptibility 4 protein-coding 205-17 chr1 164030188 164030339 + 2 NA Intergenic Intergenic -529097 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 283-108 chr12 125594589 125594850 + 2 NA intron (NM_052907, intron 5 of 8) L1ME1|LINE|L1 -27733 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 431-316 chr9 35326779 35327136 + 2 NA intron (NM_006377, intron 10 of 38) L1MB7|LINE|L1 -14939 NM_001371188 388-249 chr4 39331185 39331564 + 2 NA intron (NM_001204747, intron 4 of 24) intron (NM_001204747, intron 4 of 24) 34988 NM_002913 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 216-50 chr11 5467380 5467531 + 2 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 14047 NM_001004754 390064 Hs.553733 NM_001004754 ENSG00000187918 OR51I2 OR11-38 olfactory receptor family 51 subfamily I member 2 protein-coding 569-126 chr3 194893596 194893979 + 2 NA Intergenic Intergenic -125078 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 326-586 chrX 73374334 73374527 + 2 NA Intergenic L1PA15|LINE|L1 -72824 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 255-98 chr13 104619500 104619686 + 2 NA Intergenic Intergenic -846274 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 194-175 chr5 179492035 179492183 + 2 NA Intergenic U4|snRNA|snRNA 24602 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 372-77 chr11 81983849 81984140 + 2 NA intron (NR_120571, intron 6 of 7) L1MC3|LINE|L1 -93158 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 348-252 chr2 228553063 228553318 + 2 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 58205 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 461-152 chr20 14115238 14115571 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 119888 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 636-34 chr13 20282254 20282848 + 2 NA Intergenic MER52C|LTR|ERV1 -50156 NM_001110221 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 416-287 chr5 179487986 179488346 + 2 NA Intergenic AluY|SINE|Alu 28545 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 245-23 chr1 210088690 210088850 + 2 NA intron (NM_153262, intron 4 of 7) L1M5|LINE|L1 -144026 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 128-59 chr6 89283040 89283118 + 2 NA intron (NM_002043, intron 2 of 8) L1M5|LINE|L1 32220 NM_002043 2570 Hs.379330 NM_002043 ENSG00000111886 GABRR2 - gamma-aminobutyric acid type A receptor rho2 subunit protein-coding 254-326 chr5 147449783 147450032 + 2 NA intron (NM_001197294, intron 1 of 13) intron (NM_001197294, intron 1 of 13) 3785 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 114-60 chr8 65206630 65206700 + 2 NA Intergenic Intergenic -26325 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 160-128 chr9 26285325 26285422 + 2 NA Intergenic L1M4|LINE|L1 218698 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 347-276 chr20 60832993 60833249 + 2 NA Intergenic Intergenic -245943 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 386-4 chr1 30182368 30182740 + 2 NA Intergenic LTR41C|LTR|ERVL -144942 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 629-41 chr14 67852064 67852616 + 2 NA intron (NM_133509, intron 4 of 10) L1P4b|LINE|L1 28748 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 649-7 chr10 19954540 19955000 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 138338 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 375-314 chr5 13376287 13376613 + 2 NA Intergenic Intergenic -343564 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 315-28 chr1 173598403 173598656 + 2 NA intron (NM_178527, intron 3 of 27) MER113B|DNA|hAT-Charlie 4543 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 160-102 chr7 7776697 7776821 + 2 NA intron (NM_001302350, intron 3 of 4) Tigger20a|DNA|TcMar-Tigger -58152 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 701-9 chr10 36588191 36588655 + 2 NA Intergenic L1MEf|LINE|L1 -537434 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 362-326 chr4 170963164 170963439 + 2 NA Intergenic AluJo|SINE|Alu -77301 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 329-577 chr8 87874633 87874811 + 2 NA promoter-TSS (NM_152418) promoter-TSS (NM_152418) -707 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 259-436 chr9 115255849 115255997 + 2 NA intron (NR_163556, intron 2 of 7) L1MC4|LINE|L1 114105 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 348-282 chr22 49560011 49560270 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -16674 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 247-170 chr18 67292075 67292214 + 2 NA Intergenic Intergenic 210560 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 251-277 chr4 160727921 160728089 + 2 NA Intergenic Intergenic -950221 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 392-274 chr6 40571932 40572166 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 15315 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 197-173 chr5 118303389 118303520 + 2 NA Intergenic L1ME1|LINE|L1 20880 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 448-148 chr22 43801490 43801749 + 2 NA intron (NM_022785, intron 2 of 31) L1MA4|LINE|L1 10686 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 404-227 chr4 30679302 30679618 + 2 NA Intergenic LTR16C|LTR|ERVL -40909 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 194-201 chr7 138338025 138338167 + 2 NA Intergenic HAL1|LINE|L1 -122163 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 115-53 chrX 56966367 56966479 + 2 NA Intergenic Intergenic 29118 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 420-109 chr18 13036305 13036560 + 2 NA intron (NM_032142, intron 11 of 44) intron (NM_032142, intron 11 of 44) 45070 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 509-107 chr19 57977065 57977517 + 2 NA 3' UTR (NM_001348022, exon 7 of 7) 3' UTR (NM_001348022, exon 7 of 7) -2757 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 441-109 chr19 52356319 52356680 + 2 NA intron (NM_001161425, intron 5 of 5) intron (NM_001161425, intron 5 of 5) 11070 NM_173530 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 415-230 chr6 28088005 28088320 + 2 NA intron (NM_003447, intron 3 of 3) intron (NM_003447, intron 3 of 3) -2645 NR_024063 221584 Hs.634723 NR_024063 ZSCAN12P1 ZNF187p1|ZNF305P1|ZNF96L1|ZNF96P1|ZSCAN12L1|dJ313I6.7 zinc finger and SCAN domain containing 12 pseudogene 1 pseudo 383-165 chr18 65694822 65695151 + 2 NA Intergenic Intergenic -55266 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 256-213 chr2 126943432 126943620 + 2 NA Intergenic LOR1b|LTR|ERV1 44636 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 288-156 chr18 10997518 10997718 + 2 NA intron (NM_022068, intron 2 of 51) L1MEf|LINE|L1 151144 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 325-433 chr5 26472693 26472953 + 2 NA Intergenic AluSp|SINE|Alu 565763 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 448-36 chr10 67648957 67649253 + 2 NA intron (NM_001291133, intron 1 of 8) intron (NM_001291133, intron 1 of 8) 16555 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 515-260 chr8 39384317 39384621 + 2 NA intron (NR_001448, intron 11 of 14) L1MB3|LINE|L1 69806 NR_001448 255926 Hs.369765 NM_001040073 ENSG00000196115 ADAM5 ADAM5P|TMDCII ADAM metallopeptidase domain 5 (pseudogene) pseudo 190-108 chr22 17326322 17326496 + 2 NA Intergenic L1MC1|LINE|L1 -33540 NM_001290046 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2 histone acetyl-lysine reader protein-coding 529-234 chr9 88760783 88761153 + 2 NA Intergenic L1PA8|LINE|L1 -15063 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 528-11 chr1 83097426 83097795 + 2 NA intron (NR_147074, intron 9 of 10) intron (NR_147074, intron 9 of 10) -111402 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 265-418 chr9 117053537 117053714 + 2 NA intron (NM_014010, intron 4 of 21) intron (NM_014010, intron 4 of 21) 127576 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 348-69 chr10 119996957 119997227 + 2 NA Intergenic Intergenic 38579 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 337-211 chr17 77168118 77168366 + 2 NA intron (NM_001143999, intron 3 of 16) LTR10B1|LTR|ERV1 -16971 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 216-257 chr4 103706382 103706548 + 2 NA intron (NM_001059, intron 1 of 4) intron (NM_001059, intron 1 of 4) 13520 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 389-15 chr1 104245096 104245437 + 2 NA Intergenic Intergenic 172243 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 271-256 chr3 92279 92499 + 2 NA Intergenic Intergenic 80638 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 271-303 chr4 45580813 45581004 + 2 NA Intergenic L1MA4|LINE|L1 543146 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 290-127 chr14 42606472 42606683 + 2 NA Intergenic L1PB4|LINE|L1 999721 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 501-287 chrX 83625045 83625449 + 2 NA Intergenic L1PA6|LINE|L1 116957 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 188-121 chr3 1808873 1809047 + 2 NA Intergenic L1MDa|LINE|L1 -289843 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 306-202 chr17 83188255 83188539 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -38500 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 RPL23AP87 - ribosomal protein L23a pseudogene 87 pseudo 408-240 chr4 75301313 75301617 + 2 NA Intergenic FLAM_C|SINE|Alu -52611 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 467-102 chr16 78772339 78772637 + 2 NA intron (NM_001291997, intron 7 of 7) L1MC4a|LINE|L1 672834 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 407-112 chr17 55992724 55992994 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -160616 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 299-144 chr14 84762473 84762724 + 2 NA Intergenic Intergenic -509334 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 380-204 chr2 162716901 162717167 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -51902 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 255-356 chr6 80908673 80908873 + 2 NA Intergenic Intergenic 802102 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 435-81 chr14 70391413 70391707 + 2 NA intron (NM_001202549, intron 1 of 4) intron (NM_001202549, intron 1 of 4) 25530 NM_001202549 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 328-347 chr3 55919612 55919890 + 2 NA intron (NR_132749, intron 12 of 17) L2a|LINE|L2 -67157 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 286-18 chr1 92041562 92041753 + 2 NA intron (NM_173567, intron 2 of 6) intron (NM_173567, intron 2 of 6) 11672 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 418-251 chr7 1800185 1800544 + 2 NA Intergenic Intergenic 43889 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 418-291 chr8 114629465 114629802 + 2 NA Intergenic Intergenic 1038380 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 378-258 chr20 51301492 51301687 + 2 NA Intergenic Intergenic 151388 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 288-108 chr14 20244053 20244272 + 2 NA TTS (NM_001004479) TTS (NM_001004479) 1370 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 178-106 chr5 2980623 2980788 + 2 NA Intergenic Intergenic 62851 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 264-96 chr12 76199280 76199521 + 2 NA Intergenic Intergenic -60483 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 223-272 chr5 39333146 39333274 + 2 NA intron (NM_001737, intron 4 of 10) MLT1H|LTR|ERVL-MaLR 31285 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 255-442 chr8 132339751 132339921 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 107426 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 317-393 chr5 90011266 90011540 + 2 NA Intergenic Intergenic 5317 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 317-446 chr7 29363044 29363268 + 2 NA intron (NM_001293071, intron 2 of 11) intron (NM_001293071, intron 2 of 11) -116556 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 311-121 chr13 67369777 67370021 + 2 NA Intergenic Intergenic -2488 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 345-238 chr19 58200149 58200372 + 2 NA intron (NM_133502, intron 4 of 7) MER3|DNA|hAT-Charlie 17199 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 560-30 chr11 128429662 128430105 + 2 NA Intergenic MIR|SINE|MIR 92427 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 351-460 chr7 143185278 143185534 + 2 NA TTS (NM_176881) TTS (NM_176881) 1987 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 537-167 chr4 42799883 42800182 + 2 NA Intergenic L1M5|LINE|L1 -93234 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 243-289 chr3 94094138 94094300 + 2 NA exon (NM_022072, exon 4 of 6) exon (NM_022072, exon 4 of 6) 31158 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 341-253 chr2 80415920 80416145 + 2 NA intron (NM_001282599, intron 2 of 11) L1MA9|LINE|L1 102653 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 234-381 chr8 43600337 43600519 + 2 NA Intergenic ALR/Alpha|Satellite|centr 307986 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 276-192 chr17 70096596 70096791 + 2 NA intron (NM_001270422, intron 1 of 5) intron (NM_001270422, intron 1 of 5) -8152 NM_170742 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 238-342 chr6 162607672 162607875 + 2 NA intron (NM_004562, intron 1 of 11) L2|LINE|L2 -119359 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 165-58 chr2 177043285 177043440 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger 169049 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 282-225 chr2 125505326 125505537 + 2 NA Intergenic L1MA2|LINE|L1 612554 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 238-66 chr11 33224379 33224605 + 2 NA Intergenic Intergenic -32180 NM_001278163 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 151-4 chr1 114264601 114264705 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -110784 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 302-32 chr1 239927208 239927432 + 2 NA Intergenic AluJb|SINE|Alu -27448 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 471-12 chr1 186665492 186665868 + 2 NA Intergenic L1M5|LINE|L1 14743 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 318-204 chr17 52339234 52339453 + 2 NA Intergenic Intergenic -51179 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 220-353 chr7 109789141 109789312 + 2 NA Intergenic Intergenic 170987 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 243-65 chr11 27737603 27737771 + 2 NA Intergenic Intergenic -15657 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 348-150 chr14 86553288 86553558 + 2 NA Intergenic Intergenic -352355 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 323-512 chr7 97706930 97707234 + 2 NA Intergenic L1PREC2|LINE|L1 -25004 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 303-349 chr5 26083347 26083501 + 2 NA Intergenic Intergenic 892471 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 551-229 chr9 21992516 21992918 + 2 NA intron (NM_001363763, intron 1 of 2) intron (NM_001363763, intron 1 of 2) 1774 NM_058195 1029 Hs.512599 NM_000077 ENSG00000147889 CDKN2A ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 cyclin dependent kinase inhibitor 2A protein-coding 661-92 chr8 131681933 131682375 + 2 NA Intergenic L1MA9|LINE|L1 -221939 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 475-249 chr6 169276174 169276598 + 2 NA Intergenic MER57A-int|LTR|ERV1 -22272 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 314-526 chr7 27430903 27431106 + 2 NA Intergenic Intergenic -183775 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 336-376 chr3 124519283 124519545 + 2 NA 3' UTR (NM_001322990, exon 34 of 34) 3' UTR (NM_001322990, exon 34 of 34) -65244 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 226-259 chr4 108131950 108132141 + 2 NA intron (NM_001130713, intron 3 of 10) intron (NM_001130713, intron 3 of 10) 34752 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 189-94 chr2 114466599 114466754 + 2 NA intron (NM_001321908, intron 2 of 25) MIR|SINE|MIR 5099 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 219-204 chr20 38238392 38238559 + 2 NA intron (NR_145960, intron 2 of 10) L2c|LINE|L2 -21700 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 264-24 chr1 226315876 226316067 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -6204 NM_001270410 286826 Hs.120817 NM_173083 ENSG00000183814 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 349-451 chr6 110555574 110555846 + 2 NA Intergenic Intergenic -79097 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 309-557 chr8 118989277 118989504 + 2 NA intron (NM_001324095, intron 1 of 7) L1MCa|LINE|L1 37127 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 282-132 chr14 70514493 70514722 + 2 NA Intergenic Intergenic 20397 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 256-145 chr15 98325970 98326185 + 2 NA intron (NR_146567, intron 2 of 2) intron (NR_146567, intron 2 of 2) 5481 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 567-110 chr3 7129400 7129822 + 2 NA intron (NM_000844, intron 1 of 9) MLT1J|LTR|ERVL-MaLR -235594 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 503-254 chr7 4566922 4567296 + 2 NA Intergenic MIRb|SINE|MIR -115186 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 239-365 chr7 19069130 19069317 + 2 NA Intergenic MIR|SINE|MIR 48413 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 332-278 chr2 210740379 210740555 + 2 NA Intergenic L1MC1|LINE|L1 122896 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 153-86 chr6 128549211 128549350 + 2 NA Intergenic L1MD1|LINE|L1 -28681 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 432-232 chr5 126248700 126248968 + 2 NA Intergenic Intergenic 36341 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 304-17 chr1 112252957 112253210 + 2 NA Intergenic Intergenic -143131 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 423-15 chr1 112778835 112779102 + 2 NA Intergenic L2c|LINE|L2 58401 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 397-268 chr5 146683572 146683934 + 2 NA intron (NM_181678, intron 6 of 10) intron (NM_181678, intron 6 of 10) -167640 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 266-396 chr7 46006895 46007090 + 2 NA Intergenic L2b|LINE|L2 -85720 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 357-187 chr2 23142672 23142860 + 2 NA Intergenic Intergenic -242413 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 373-440 chrX 62694487 62694820 + 2 NA Intergenic ALR/Alpha|Satellite|centr 656679 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 168-70 chr20 22741973 22742102 + 2 NA Intergenic L2a|LINE|L2 -56693 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 235-325 chr7 41759949 41760170 + 2 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -56969 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 364-478 chr9 126007554 126007836 + 2 NA Intergenic HERV16-int|LTR|ERVL 259512 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 321-169 chr14 52446500 52446709 + 2 NA intron (NM_001160047, intron 18 of 20) L1MA3|LINE|L1 105901 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 271-332 chr5 12480996 12481240 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -93739 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 236-351 chr8 75185898 75186074 + 2 NA Intergenic L1PA16|LINE|L1 92495 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 597-54 chr16 82385187 82385639 + 2 NA Intergenic Intergenic -215189 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 369-346 chr5 166642569 166642859 + 2 NA Intergenic MIR3|SINE|MIR 283656 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 362-14 chr1 82976826 82977100 + 2 NA intron (NR_110633, intron 2 of 2) intron (NR_110633, intron 2 of 2) 7959 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 353-125 chr13 33785272 33785464 + 2 NA Intergenic Intergenic -32701 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 417-300 chr9 19020984 19021395 + 2 NA intron (NM_001287049, intron 1 of 3) MLT1O|LTR|ERVL-MaLR 12020 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 369-406 chr8 76645429 76645782 + 2 NA intron (NR_024360, intron 2 of 3) intron (NR_024360, intron 2 of 3) -35642 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 498-264 chr8 38614898 38615232 + 2 NA Intergenic L2a|LINE|L2 -13808 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 215-28 chr10 32732074 32732225 + 2 NA intron (NM_001321115, intron 29 of 43) intron (NM_001321115, intron 29 of 43) 169323 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 202-143 chr20 54143576 54143750 + 2 NA Intergenic Intergenic 30323 NM_001128915 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 194-57 chr14 55507069 55507242 + 2 NA Intergenic LTR16E1|LTR|ERVL -66610 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 342-86 chr11 18130918 18131121 + 2 NA intron (NM_054031, intron 1 of 2) L1PB1|LINE|L1 -1552 NM_001370464 117195 Hs.380177 NM_054031 ENSG00000179826 MRGPRX3 GPCR|MRGX3|SNSR1|SNSR2 MAS related GPR family member X3 protein-coding 734-79 chr8 138556414 138556899 + 2 NA Intergenic MLT2F|LTR|ERVL -58926 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 355-243 chr2 84676880 84677100 + 2 NA intron (NM_001370, intron 40 of 76) intron (NM_001370, intron 40 of 76) 160535 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 520-214 chr4 60644551 60644937 + 2 NA Intergenic L1MEd|LINE|L1 -277875 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 331-324 chr21 30149054 30149271 + 2 NA Intergenic L3|LINE|CR1 17643 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 611-132 chr6 138240474 138240987 + 2 NA intron (NM_020340, intron 6 of 33) intron (NM_020340, intron 6 of 33) -22240 NM_021635 59351 Hs.302016 NM_021635 ENSG00000254440 PBOV1 UC28|UROC28|dJ171N11.2 prostate and breast cancer overexpressed 1 protein-coding 238-416 chr9 76341279 76341452 + 2 NA intron (NM_001190482, intron 34 of 36) L1MEi|LINE|L1 53061 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 345-340 chr3 6316312 6316631 + 2 NA Intergenic Intergenic 488978 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 668-109 chr8 133522061 133522527 + 2 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 49593 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 163-36 chr12 85325181 85325316 + 2 NA Intergenic Intergenic 45028 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 145-62 chr4 66924073 66924205 + 2 NA Intergenic Intergenic 497861 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 237-256 chr3 187068822 187068995 + 2 NA intron (NM_173216, intron 5 of 7) intron (NM_173216, intron 5 of 7) 30190 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 382-73 chr12 9227200 9227492 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 6861 NR_040112 3 Hs.569125 NR_040112 ENSG00000256069 A2MP1 A2MP alpha-2-macroglobulin pseudogene 1 pseudo 286-414 chr7 40528906 40529114 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 394034 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 290-438 chr7 145861798 145862015 + 2 NA Intergenic L1PA16|LINE|L1 -912365 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 376-187 chr2 83124836 83125092 + 2 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR 268161 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 360-220 chr2 77906831 77907153 + 2 NA intron (NR_110288, intron 1 of 3) LTR27B|LTR|ERV1 -8942 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 227-267 chr4 130746025 130746189 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 369746 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 327-56 chr10 72536084 72536291 + 2 NA intron (NM_006077, intron 4 of 11) L1MA5A|LINE|L1 -12201 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 253-403 chr8 36435941 36436129 + 2 NA Intergenic Intergenic -348339 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 286-263 chr22 25162562 25162778 + 2 NA intron (NM_001145206, intron 4 of 10) L2a|LINE|L2 -37188 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 368-178 chr16 62101562 62101763 + 2 NA Intergenic Intergenic -65224 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 251-94 chr14 57096023 57096225 + 2 NA Intergenic Intergenic 172781 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 255-273 chr3 155147345 155147509 + 2 NA intron (NM_000902, intron 15 of 22) intron (NM_000902, intron 15 of 22) 67416 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 216-86 chr13 72475290 72475470 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 252249 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 312-100 chr12 30151040 30151201 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -366361 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 356-32 chr1 227661359 227661602 + 2 NA 3' UTR (NM_001367910, exon 5 of 5) 3' UTR (NM_001367910, exon 5 of 5) 36227 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 314-265 chr2 21347337 21347501 + 2 NA Intergenic Intergenic 223433 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 225-92 chr14 66693556 66693739 + 2 NA intron (NM_001024218, intron 2 of 21) MLT2B3|LTR|ERVL 186240 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 333-57 chr10 53748943 53749257 + 2 NA Intergenic L1ME1|LINE|L1 -737130 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 225-244 chr4 63175612 63175749 + 2 NA Intergenic L1MEf|LINE|L1 -1013915 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 413-168 chr20 48288021 48288348 + 2 NA Intergenic Intergenic -71727 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 462-187 chr3 136869843 136870176 + 2 NA intron (NM_001291999, intron 1 of 3) intron (NM_001291999, intron 1 of 3) 7801 NM_001291999 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 137-93 chr8 126051131 126051220 + 2 NA Intergenic Intergenic -99978 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 280-180 chr2 182616 182841 + 2 NA Intergenic LOR1-int|LTR|ERV1 73612 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 327-327 chr3 44489887 44490207 + 2 NA Intergenic MER70-int|LTR|ERVL -12377 NM_001369454 353274 Hs.250481 NM_181489 ENSG00000185219 ZNF445 ZKSCAN15|ZNF168|ZSCAN47 zinc finger protein 445 protein-coding 310-455 chr6 119732497 119732757 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 182819 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 487-174 chr22 47905485 47905910 + 2 NA Intergenic L1MEd|LINE|L1 274023 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 496-247 chr6 164236139 164236496 + 2 NA Intergenic AluY|SINE|Alu -564833 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 849-51 chr9 32676369 32676989 + 2 NA Intergenic L2|LINE|L2 -41010 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 263-258 chr3 74619922 74620077 + 2 NA Intergenic Intergenic -98859 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 200-209 chr5 34487309 34487487 + 2 NA Intergenic Intergenic -168930 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 678-102 chr8 84223616 84224129 + 2 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 39206 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 260-243 chr20 42201187 42201405 + 2 NA intron (NM_133170, intron 16 of 31) AluJb|SINE|Alu -484187 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 630-47 chr2 27984270 27984779 + 2 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -11843 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 331-337 chr3 2513475 2513799 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 274808 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 228-70 chr12 44892842 44893001 + 2 NA intron (NM_001145110, intron 1 of 20) MIR|SINE|MIR -16071 NM_001145107 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 340-215 chr18 43159856 43160034 + 2 NA Intergenic Intergenic -44253 NM_001272077 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 183-35 chr12 44687599 44687751 + 2 NA intron (NM_006159, intron 13 of 20) intron (NM_006159, intron 13 of 20) 187986 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 386-277 chr5 8691813 8692153 + 2 NA Intergenic Intergenic -147749 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 486-115 chr17 61421139 61421612 + 2 NA Intergenic MIRb|SINE|MIR 9624 NR_160788 388407 Hs.434459 NM_203425 C17orf82 - chromosome 17 open reading frame 82 ncRNA 288-368 chr6 54939219 54939409 + 2 NA intron (NM_001010872, intron 4 of 4) L1PB2|LINE|L1 92543 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 351-310 chr3 106351014 106351216 + 2 NA Intergenic Intergenic -481714 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 423-177 chr3 78486308 78486587 + 2 NA Intergenic L1ME1|LINE|L1 -437484 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 215-93 chr15 24719932 24720066 + 2 NA Intergenic L1MC3|LINE|L1 44605 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 360-395 chr6 18822904 18823129 + 2 NA Intergenic L1MA3|LINE|L1 251232 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 433-72 chr13 63205750 63206130 + 2 NA intron (NR_126409, intron 5 of 6) intron (NR_126409, intron 5 of 6) 122154 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 451-145 chr3 80409227 80409495 + 2 NA Intergenic Intergenic -355536 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 349-29 chr1 161993044 161993266 + 2 NA intron (NM_001347700, intron 6 of 7) MER45B|DNA|hAT-Tip100 31310 NM_015441 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 162-51 chr19 44716167 44716294 + 2 NA Intergenic MIR|SINE|MIR 17079 NM_001039213 388551 Hs.456381 NM_001039213 ENSG00000213892 CEACAM16 CEAL2|DFNA4B|DFNB113 carcinoembryonic antigen related cell adhesion molecule 16 protein-coding 299-58 chr10 80311742 80312000 + 2 NA Intergenic L1MB5|LINE|L1 -22213 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 478-68 chr13 37530729 37531082 + 2 NA Intergenic LTR26|LTR|ERV1 -4035 NR_040244 400121 Hs.558894 NR_040244 ENSG00000275226 LINC00547 - long intergenic non-protein coding RNA 547 ncRNA 371-421 chr9 135764227 135764489 + 2 NA intron (NM_001272003, intron 10 of 30) AluJb|SINE|Alu 62173 NM_020822 57582 Hs.104950 NM_020822 ENSG00000107147 KCNT1 EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2 potassium sodium-activated channel subfamily T member 1 protein-coding 135-64 chr7 4810562 4810659 + 2 NA intron (NM_018059, intron 9 of 14) L1ME3A|LINE|L1 -21971 NR_039800 100616465 NR_039800 ENSG00000264474 MIR4656 - microRNA 4656 ncRNA 265-26 chr10 12867305 12867517 + 2 NA Intergenic L1MC5|LINE|L1 134302 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 415-19 chr1 206872157 206872512 + 2 NA Intergenic MER89|LTR|ERV1 6525 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 311-77 chr11 5744099 5744345 + 2 NA Intergenic L1PA15-16|LINE|L1 7774 NM_001005180 387748 Hs.689609 NM_001005180 ENSG00000181023 OR56B1 OR11-65|OR56B1P olfactory receptor family 56 subfamily B member 1 protein-coding 371-426 chrX 143933228 143933557 + 2 NA Intergenic Intergenic 49321 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 404-16 chr1 106309706 106310044 + 2 NA Intergenic L1MA4|LINE|L1 -281622 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 612-75 chr20 16717547 16717943 + 2 NA Intergenic AluJr|SINE|Alu -12281 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 136-23 chr14 76975827 76975906 + 2 NA Intergenic Intergenic 16228 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 284-58 chr10 98930637 98930802 + 2 NA intron (NM_021828, intron 3 of 11) L1PA10|LINE|L1 -6151 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 234-116 chr16 7267816 7268039 + 2 NA intron (NM_018723, intron 4 of 15) Tigger3a|DNA|TcMar-Tigger -64918 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 182-39 chr12 52586236 52586370 + 2 NA intron (NM_080747, intron 8 of 8) intron (NM_080747, intron 8 of 8) -12460 NM_175053 121391 Hs.660125 NM_175053 ENSG00000170484 KRT74 ADWH|HTSS2|HYPT3|K6IRS4|KRT5C|KRT6IRS4 keratin 74 protein-coding 132-36 chr18 13215712 13215807 + 2 NA Intergenic Intergenic -3001 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 241-306 chr5 81462792 81462988 + 2 NA intron (NM_012446, intron 9 of 16) intron (NM_012446, intron 9 of 16) -68756 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 195-63 chr14 53842118 53842246 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 106302 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 323-376 chr4 85718492 85718675 + 2 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -3885 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 157-114 chr6 126710704 126710792 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 226117 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 160-116 chr8 71922736 71922833 + 2 NA intron (NR_033651, intron 1 of 2) intron (NR_033651, intron 1 of 2) -78288 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 212-15 chr1 170062321 170062523 + 2 NA intron (NM_014970, intron 1 of 19) L2|LINE|L2 6493 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 402-18 chr1 211459381 211459675 + 2 NA Intergenic L1MA1|LINE|L1 33389 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 493-3 chr1 36807332 36807643 + 2 NA intron (NM_000831, intron 13 of 15) intron (NM_000831, intron 13 of 15) 227028 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 257-43 chr10 61559754 61559970 + 2 NA Intergenic L1MEh|LINE|L1 79821 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 262-332 chr5 2078903 2079159 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 191700 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 559-209 chrX 90019568 90019952 + 2 NA Intergenic L1MA6|LINE|L1 97852 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 343-148 chr14 78443566 78443821 + 2 NA intron (NM_004796, intron 1 of 16) MIRb|SINE|MIR 39974 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 319-408 chr5 46020927 46021157 + 2 NA Intergenic ALR/Alpha|Satellite|centr -324662 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 330-261 chr2 57262481 57262766 + 2 NA Intergenic Intergenic -645028 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 400-75 chr12 127216540 127216884 + 2 NA Intergenic Intergenic 67571 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 580-181 chr7 48324745 48325145 + 2 NA intron (NM_152701, intron 27 of 61) intron (NM_152701, intron 27 of 61) 153487 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 397-32 chr10 59966203 59966592 + 2 NA Intergenic Intergenic -5484 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 330-374 chr4 33593834 33594028 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 445962 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 238-58 chr10 123396382 123396553 + 2 NA Intergenic Intergenic 242065 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 338-169 chr14 75008805 75009100 + 2 NA intron (NM_014239, intron 7 of 7) intron (NM_014239, intron 7 of 7) 6031 NM_014239 8892 Hs.409137 NM_014239 ENSG00000119718 EIF2B2 EIF-2Bbeta|EIF2B eukaryotic translation initiation factor 2B subunit beta protein-coding 480-123 chr18 22806717 22807192 + 2 NA Intergenic Intergenic -20117 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 252-270 chr3 104473657 104473829 + 2 NA Intergenic L1M4|LINE|L1 -892970 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 212-167 chr2 118259008 118259138 + 2 NA Intergenic L1ME1|LINE|L1 -72687 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 783-41 chr2 107249712 107250169 + 2 NA intron (NR_049853, intron 2 of 3) L1MC1|LINE|L1 99585 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 238-181 chr2 111630013 111630244 + 2 NA Intergenic L1MDa|LINE|L1 -134967 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 330-404 chr5 9026406 9026651 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 27367 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 510-230 chr5 101065200 101065574 + 2 NA Intergenic Intergenic -162105 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 377-20 chr1 158473219 158473494 + 2 NA Intergenic Intergenic -6522 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 352-450 chr6 46300342 46300613 + 2 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) 24153 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 414-148 chr2 57013303 57013701 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -827732 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 448-76 chr13 80021768 80022139 + 2 NA intron (NR_104138, intron 1 of 1) intron (NR_104138, intron 1 of 1) 10876 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 302-7 chr1 63706812 63707063 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -67080 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 373-211 chr2 142126604 142126939 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 4930 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 279-20 chr1 181464751 181464990 + 2 NA Intergenic L1ME3Cz|LINE|L1 -18647 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 293-183 chr2 51744334 51744592 + 2 NA intron (NR_135237, intron 5 of 10) MER117|DNA|hAT-Charlie -626185 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 449-105 chr19 34778172 34778486 + 2 NA Intergenic L1MD|LINE|L1 -5114 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 647-43 chr19 24362935 24363405 + 2 NA Intergenic ALR/Alpha|Satellite|centr -199723 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 481-162 chr2 202677963 202678314 + 2 NA intron (NM_173511, intron 1 of 7) LTR9B|LTR|ERV1 43169 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 273-137 chr14 71758101 71758252 + 2 NA Intergenic Intergenic 171878 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 481-265 chr6 65238210 65238606 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -63010 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 291-167 chr16 86412664 86412907 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -67106 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 257-223 chr2 198528363 198528522 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -153345 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 153-43 chr17 52796717 52796853 + 2 NA Intergenic L1ME3D|LINE|L1 -65336 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 458-145 chr2 165091683 165091985 + 2 NA intron (NM_006922, intron 27 of 27) intron (NM_006922, intron 27 of 27) 112216 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 435-256 chr8 131135097 131135369 + 2 NA Intergenic MER11A|LTR|ERVK -94324 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 291-149 chr15 60956480 60956733 + 2 NA intron (NM_134261, intron 1 of 10) MIR|SINE|MIR 272696 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 313-439 chr5 97068691 97068972 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 73780 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 336-228 chr18 60893617 60893902 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -439671 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 279-206 chr2 189400279 189400444 + 2 NA Intergenic L1MEg|LINE|L1 -41072 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 303-283 chr3 56761243 56761508 + 2 NA intron (NM_001128615, intron 5 of 12) intron (NM_001128615, intron 5 of 12) 14342 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 281-77 chr12 5696248 5696416 + 2 NA intron (NM_001278596, intron 15 of 25) L1M5|LINE|L1 202200 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 272-72 chr11 50558718 50558950 + 2 NA Intergenic ALR/Alpha|Satellite|centr 149687 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 373-159 chr17 58866224 58866543 + 2 NA intron (NM_014906, intron 1 of 6) LTR49-int|LTR|ERV1 110514 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 156-10 chr10 60523033 60523144 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 49868 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 305-326 chr22 26252537 26252757 + 2 NA intron (NM_001184776, intron 1 of 14) L1PA16|LINE|L1 83173 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 427-93 chr17 17637327 17637706 + 2 NA Intergenic MSTC-int|LTR|ERVL-MaLR 40172 NR_131243 105371564 Hs.369680 NR_131243 ENSG00000223979 SMCR2 TCONS_00025215 Smith-Magenis syndrome chromosome region, candidate 2 ncRNA 650-68 chr21 20356354 20356979 + 2 NA Intergenic 7SK|RNA|RNA -97981 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 553-221 chr7 72342166 72342540 + 2 NA intron (NM_001363460, intron 1 of 5) intron (NM_001363460, intron 1 of 5) -4962 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 247-31 chr10 6965930 6966128 + 2 NA Intergenic Intergenic 186431 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 237-385 chr8 117105268 117105459 + 2 NA intron (NM_001172815, intron 2 of 10) MLT1C-int|LTR|ERVL-MaLR -29632 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 257-337 chr5 145157760 145157985 + 2 NA Intergenic MIR|SINE|MIR 677470 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 570-187 chr7 113816963 113817407 + 2 NA Intergenic Intergenic 101824 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 679-77 chr4 33394816 33395352 + 2 NA Intergenic Intergenic 644809 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 595-92 chr2 151390838 151391403 + 2 NA Intergenic Intergenic -11749 NR_110248 101929319 Hs.639241 NR_110248 LOC101929319 - uncharacterized LOC101929319 ncRNA 228-325 chr7 112984146 112984305 + 2 NA intron (NR_110162, intron 2 of 5) intron (NR_110162, intron 2 of 5) 11418 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 232-22 chr1 234477962 234478143 + 2 NA intron (NM_005646, intron 1 of 29) intron (NM_005646, intron 1 of 29) 1127 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 380-365 chr7 49656435 49656797 + 2 NA Intergenic L1ME3F|LINE|L1 -117022 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 448-155 chr3 34324082 34324506 + 2 NA Intergenic Intergenic 525664 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 385-176 chr2 82803972 82804278 + 2 NA Intergenic L1PA13|LINE|L1 -52678 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 383-391 chr8 121987809 121988087 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -346508 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 291-366 chr5 124432923 124433116 + 2 NA intron (NR_125774, intron 3 of 5) L1MA6|LINE|L1 5501 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 669-116 chr8 130441518 130442103 + 2 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 1850 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 277-40 chr10 17341051 17341206 + 2 NA intron (NM_001004470, intron 4 of 7) L3|LINE|CR1 -45808 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 519-150 chr3 130595212 130595605 + 2 NA intron (NM_001102608, intron 17 of 35) L1ME3A|LINE|L1 35074 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 282-184 chr19 32274917 32275067 + 2 NA Intergenic L1M4a1|LINE|L1 -70618 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 313-345 chr3 67990795 67991039 + 2 NA promoter-TSS (NM_001252216) promoter-TSS (NM_001252216) -675 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 284-103 chr13 35911832 35912055 + 2 NA intron (NM_001330071, intron 4 of 16) MIRb|SINE|MIR -56082 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 260-219 chr2 137010860 137011026 + 2 NA intron (NM_001316349, intron 2 of 27) L2a|LINE|L2 245398 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 292-255 chr20 46860256 46860432 + 2 NA Intergenic L1ME2|LINE|L1 -34280 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 260-172 chr17 61177008 61177235 + 2 NA intron (NM_001330413, intron 23 of 25) L1ME1|LINE|L1 190583 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 288-476 chr9 119778024 119778298 + 2 NA Intergenic Intergenic -156899 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 361-175 chr17 71133775 71134043 + 2 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 68270 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 463-191 chr3 112658436 112658840 + 2 NA Intergenic L1PA16|LINE|L1 -17495 NM_199512 151887 Hs.477128 NM_199511 ENSG00000091986 CCDC80 CL2|DRO1|SSG1|URB|okuribin coiled-coil domain containing 80 protein-coding 353-411 chr5 81893362 81893597 + 2 NA Intergenic Intergenic -78544 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 267-433 chr8 125622931 125623158 + 2 NA Intergenic Intergenic 190835 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 242-201 chr2 159172648 159172819 + 2 NA intron (NM_001350065, intron 12 of 27) intron (NM_001350065, intron 12 of 27) -14102 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 682-4 chr1 98338817 98339310 + 2 NA Intergenic Intergenic 128352 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 232-375 chr8 89034293 89034445 + 2 NA Intergenic Intergenic -706886 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 455-302 chr9 113747303 113747675 + 2 NA Intergenic L1MC5a|LINE|L1 -128793 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 307-305 chr3 73682205 73682504 + 2 NA Intergenic MamRep4096|DNA|hAT-Tip100 -57413 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 382-423 chr8 129261609 129261911 + 2 NA Intergenic Intergenic -20520 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 509-138 chr21 34678700 34679025 + 2 NA intron (NM_053277, intron 1 of 5) L1ME4b|LINE|L1 9868 NM_053277 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 300-245 chr20 51072162 51072366 + 2 NA Intergenic Intergenic -49157 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 219-322 chr6 162485010 162485181 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -242037 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 282-256 chr2 235339559 235339759 + 2 NA Intergenic L1M5|LINE|L1 -154384 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 247-260 chr3 54655573 54655726 + 2 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -15792 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 295-437 chr7 45880295 45880513 + 2 NA Intergenic Intergenic -8084 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 355-421 chr5 174229360 174229568 + 2 NA Intergenic Intergenic -106890 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 282-97 chr12 39632706 39632940 + 2 NA intron (NM_001031748, intron 1 of 12) Tigger3b|DNA|TcMar-Tigger 6640 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 636-55 chr15 71821961 71822522 + 2 NA TTS (NM_006901) TTS (NM_006901) 11687 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 265-214 chr20 41953544 41953724 + 2 NA Intergenic (CAT)n|Simple_repeat|Simple_repeat -335257 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 404-101 chr14 65131934 65132208 + 2 NA Intergenic LTR84b|LTR|ERVL -29376 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 359-261 chr2 203800404 203800709 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -67215 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 416-96 chr12 83689550 83689806 + 2 NA Intergenic L1MA3|LINE|L1 1002523 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 205-78 chr14 41889094 41889253 + 2 NA intron (NR_144389, intron 4 of 6) intron (NR_144389, intron 4 of 6) 282317 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 258-411 chr8 134758541 134758708 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 41983 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 321-312 chr2 183738139 183738395 + 2 NA Intergenic Intergenic 613824 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 304-537 chr8 126215580 126215745 + 2 NA Intergenic Intergenic -109833 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 484-193 chr4 96764551 96764891 + 2 NA intron (NR_147149, intron 3 of 3) L1MA4A|LINE|L1 454018 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 171-121 chr7 23819404 23819538 + 2 NA intron (NM_031414, intron 23 of 23) AluSz6|SINE|Alu 109252 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 269-301 chr4 183544062 183544244 + 2 NA Intergenic Intergenic 38071 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 365-235 chr20 42674374 42674654 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -10969 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 387-396 chr9 92374776 92375106 + 2 NA intron (NM_001286969, intron 3 of 6) L1M4|LINE|L1 29637 NM_014057 4969 Hs.109439 NM_014057 ENSG00000106809 OGN OG|OIF|SLRR3A osteoglycin protein-coding 563-159 chr6 101667328 101667737 + 2 NA intron (NM_001166247, intron 3 of 16) intron (NM_001166247, intron 3 of 16) 268547 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 347-519 chr8 104399966 104400230 + 2 NA intron (NM_001385, intron 7 of 9) intron (NM_001385, intron 7 of 9) 60272 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 225-298 chr5 160760960 160761128 + 2 NA intron (NM_001366652, intron 2 of 24) L1PB1|LINE|L1 -75653 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 913-41 chr8 69243252 69243867 + 2 NA Intergenic L1MEg|LINE|L1 -139369 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 294-177 chr18 47334481 47334711 + 2 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) -45900 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 237-29 chr10 28277353 28277572 + 2 NA intron (NM_173496, intron 2 of 18) MER30|DNA|hAT-Charlie 4661 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 379-32 chr1 234460706 234461027 + 2 NA intron (NM_005646, intron 6 of 29) L1MB7|LINE|L1 18313 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 253-398 chr7 138051185 138051339 + 2 NA Intergenic L1ME1|LINE|L1 -25197 NM_001190906 6718 Hs.201667 NM_005989 ENSG00000122787 AKR1D1 3o5bred|CBAS2|SRD5B1 aldo-keto reductase family 1 member D1 protein-coding 345-220 chr18 38585625 38585900 + 2 NA Intergenic Intergenic 928627 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 362-430 chr8 51793905 51794146 + 2 NA intron (NM_144651, intron 1 of 22) L1PA8A|LINE|L1 15420 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 208-68 chr13 61845767 61845924 + 2 NA Intergenic Intergenic 183703 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 310-372 chr4 77253545 77253735 + 2 NA Intergenic Intergenic 96433 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 303-479 chr8 135698075 135698232 + 2 NA Intergenic L1MA4|LINE|L1 240697 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 309-57 chr10 76055484 76055711 + 2 NA intron (NM_001305581, intron 4 of 6) MER52A|LTR|ERV1 272836 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 243-156 chr16 76015302 76015496 + 2 NA Intergenic L1PA5|LINE|L1 -262002 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 623-85 chr3 96711553 96711959 + 2 NA Intergenic Intergenic -102838 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 226-148 chr2 13362786 13362948 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -355854 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 351-271 chr21 21964214 21964494 + 2 NA Intergenic MER70B|LTR|ERVL 134105 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 275-366 chr8 117072195 117072382 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -62707 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 446-157 chr2 134113746 134114144 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -5990 NM_001371457 503-252 chr6 168183460 168183879 + 2 NA Intergenic Intergenic 42848 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 282-226 chr2 125948327 125948549 + 2 NA Intergenic L1MA5|LINE|L1 169547 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 541-210 chr7 4031464 4031974 + 2 NA intron (NM_152744, intron 17 of 44) L1MC5a|LINE|L1 -97966 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 351-360 chr4 163646155 163646464 + 2 NA intron (NM_001166373, intron 4 of 7) L1M3a|LINE|L1 -32775 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 517-155 chr20 15991157 15991522 + 2 NA intron (NM_001351663, intron 15 of 17) intron (NM_001351663, intron 15 of 17) -5457 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 230-394 chr9 13837796 13837984 + 2 NA Intergenic Intergenic -90081 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 362-142 chr14 46700801 46701117 + 2 NA Intergenic Intergenic -49178 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 422-239 chr5 46121011 46121353 + 2 NA Intergenic ALR/Alpha|Satellite|centr -424802 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 369-3 chr1 45179256 45179559 + 2 NA intron (NM_020883, intron 1 of 13) L1PA16|LINE|L1 27198 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 409-101 chr15 99018800 99019040 + 2 NA intron (NR_126487, intron 1 of 3) MIR|SINE|MIR 4216 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 310-17 chr1 115621923 115622121 + 2 NA Intergenic L1MEc|LINE|L1 -19948 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 415-148 chr2 233644808 233645182 + 2 NA intron (NM_019075, intron 1 of 4) Tigger2|DNA|TcMar-Tigger 8518 NM_019075 54575 Hs.554822 NM_019075 ENSG00000242515 UGT1A10 GNT1|UDPGT|UGT-1A|UGT-1J|UGT1|UGT1-01|UGT1-10|UGT1.1|UGT1.10|UGT1A|UGT1A1|UGT1J|hUG-BR1 UDP glucuronosyltransferase family 1 member A10 protein-coding 224-71 chr13 37260956 37261094 + 2 NA Intergenic Intergenic -155361 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 137-55 chr20 41325409 41325501 + 2 NA Intergenic AluJo|SINE|Alu -15366 NM_001301860 64900 Hs.25897 NM_022896 ENSG00000132793 LPIN3 LIPN3L|SMP2 lipin 3 protein-coding 515-257 chr7 107637799 107638105 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -22876 NM_000441 5172 Hs.571246 NM_000441 ENSG00000091137 SLC26A4 DFNB4|EVA|PDS|TDH2B solute carrier family 26 member 4 protein-coding 150-64 chr22 46778380 46778488 + 2 NA intron (NM_001284305, intron 1 of 12) Tigger3b|DNA|TcMar-Tigger 4507 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 218-12 chr1 106191016 106191207 + 2 NA Intergenic L1M1|LINE|L1 -162858 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 282-276 chr22 27014767 27014929 + 2 NA Intergenic Intergenic 45670 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 278-312 chr4 65277275 65277487 + 2 NA Intergenic LTR37A|LTR|ERV1 -272881 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 245-165 chr18 47605198 47605373 + 2 NA Intergenic Intergenic 224789 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 244-133 chr18 22395430 22395585 + 2 NA Intergenic Intergenic 22408 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 448-123 chr2 145725494 145725911 + 2 NA Intergenic Intergenic -861355 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 722-5 chr1 90804053 90804530 + 2 NA intron (NR_135038, intron 1 of 2) L1MC1|LINE|L1 31870 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 472-12 chr1 80839371 80839748 + 2 NA Intergenic Intergenic 198272 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 567-5 chr1 65632731 65633123 + 2 NA intron (NM_002303, intron 19 of 19) intron (NM_002303, intron 19 of 19) 107238 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 691-14 chr11 102655298 102655806 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -30220 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 152-12 chr10 82532603 82532734 + 2 NA intron (NR_163253, intron 3 of 10) L1MB1|LINE|L1 -299748 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 306-477 chr7 72163502 72163764 + 2 NA intron (NM_001363460, intron 2 of 5) L1M4a1|LINE|L1 173758 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 341-444 chr5 121566538 121566839 + 2 NA Intergenic L1MA8|LINE|L1 244138 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 376-165 chr19 53728897 53729246 + 2 NA promoter-TSS (NR_030209) promoter-TSS (NR_030209) -767 NR_030209 574487 NR_030209 ENSG00000207987 MIR518E MIRN518E|mir-518e microRNA 518e ncRNA 668-110 chr8 143866565 143866994 + 2 NA exon (NM_031308, exon 2 of 2) exon (NM_031308, exon 2 of 2) 11685 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 571-42 chr13 43488480 43488906 + 2 NA intron (NM_001347965, intron 1 of 15) MLT1A1-int|LTR|ERVL-MaLR 39841 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 337-241 chr2 33919732 33919985 + 2 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -147368 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 169-75 chr3 70668043 70668143 + 2 NA Intergenic L1ME1|LINE|L1 -355455 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 504-30 chr10 90476497 90476917 + 2 NA intron (NR_110657, intron 2 of 6) intron (NR_110657, intron 2 of 6) 64098 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 276-148 chr14 60956118 60956355 + 2 NA intron (NM_001177963, intron 6 of 6) L1M1|LINE|L1 24843 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 387-127 chr16 20210633 20211003 + 2 NA Intergenic Intergenic 116695 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 453-180 chr4 66950777 66951134 + 2 NA Intergenic Intergenic 471045 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 212-74 chr11 132576683 132576876 + 2 NA intron (NM_002545, intron 2 of 6) L1MB1|LINE|L1 292477 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 329-556 chr8 10140752 10140972 + 2 NA intron (NM_001199729, intron 2 of 6) A-rich|Low_complexity|Low_complexity 45211 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 492-99 chr15 49791570 49791960 + 2 NA Intergenic FLAM_A|SINE|Alu 170717 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 298-143 chr15 62227410 62227573 + 2 NA Intergenic Intergenic 21304 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 565-129 chr4 65976465 65976872 + 2 NA Intergenic L1PA12|LINE|L1 -300156 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 291-453 chr8 87787684 87787862 + 2 NA Intergenic Intergenic 86242 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 341-199 chr17 61548666 61548961 + 2 NA Intergenic L1MEi|LINE|L1 42406 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 259-198 chr2 76226877 76227066 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -516056 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 661-57 chr21 21439513 21439925 + 2 NA intron (NM_001352592, intron 13 of 18) intron (NM_001352592, intron 13 of 18) 292557 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 446-178 chr3 8149514 8149767 + 2 NA Intergenic Intergenic -133333 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 395-90 chr14 53689307 53689637 + 2 NA Intergenic Intergenic 259012 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 497-39 chr11 36729438 36729812 + 2 NA Intergenic Intergenic -131346 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 196-157 chr21 24537854 24538031 + 2 NA intron (NR_135519, intron 2 of 2) AluJo|SINE|Alu 109202 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 317-343 chr4 44557898 44558089 + 2 NA Intergenic Intergenic 93648 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 253-89 chr11 121253998 121254205 + 2 NA Intergenic AluJb|SINE|Alu -38670 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 495-197 chr5 55907091 55907462 + 2 NA intron (NM_001297572, intron 9 of 10) intron (NM_001297572, intron 9 of 10) 53954 NM_001242639 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 434-91 chr15 59589293 59589596 + 2 NA Intergenic LTR37B|LTR|ERV1 -22339 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 275-180 chr2 33059753 33060014 + 2 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -74714 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 305-123 chr12 59718101 59718262 + 2 NA intron (NM_001270623, intron 3 of 5) intron (NM_001270623, intron 3 of 5) 28811 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 234-387 chr8 81558180 81558389 + 2 NA Intergenic Intergenic -26894 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 316-203 chr16 64999248 64999524 + 2 NA intron (NM_001330576, intron 2 of 11) L1ME4b|LINE|L1 122677 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 296-200 chr18 72183704 72183978 + 2 NA Intergenic HAL1b|LINE|L1 360501 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 607-37 chr14 25767229 25767653 + 2 NA Intergenic Intergenic -717144 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 241-358 chr7 21399690 21399834 + 2 NA Intergenic Intergenic -28321 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 274-219 chr2 125969482 125969641 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 148424 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 333-56 chr10 53411984 53412234 + 2 NA Intergenic Intergenic -640409 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 847-17 chr13 100963023 100963832 + 2 NA intron (NR_047687, intron 2 of 7) L1MB8|LINE|L1 -19063 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 348-441 chr6 20361813 20362058 + 2 NA Intergenic Intergenic -39944 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 836-67 chr9 93962400 93963214 + 2 NA Intergenic Intergenic 6973 NR_144455 101928040 Hs.375820 NR_144455 ENSG00000235601 BARX1-DT BARX1-AS1 BARX1 divergent transcript ncRNA 385-375 chr8 43604147 43604441 + 2 NA Intergenic ALR/Alpha|Satellite|centr 311852 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 317-230 chr2 80590768 80591050 + 2 NA intron (NM_001282599, intron 9 of 11) intron (NM_001282599, intron 9 of 11) 277530 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 180-27 chr11 43302937 43303086 + 2 NA Intergenic Intergenic -8985 NM_001243747 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 300-431 chr7 53398203 53398387 + 2 NA Intergenic Intergenic 362662 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 419-125 chr18 49351406 49351761 + 2 NA intron (NM_001353210, intron 6 of 16) HAL1|LINE|L1 109062 NM_001353215 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 216-87 chr13 77657780 77657932 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 4947 NM_001310140 100129307 NM_001310140 LOC100129307 - putative UPF0607 protein ENSP00000383144 protein-coding 424-32 chr10 107588862 107589237 + 2 NA Intergenic MER21B|LTR|ERVL -424343 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 582-124 chr5 102531641 102531995 + 2 NA Intergenic Intergenic -32817 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 343-23 chr1 104148384 104148634 + 2 NA Intergenic L1PA16|LINE|L1 75486 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 503-27 chr10 44446357 44446729 + 2 NA Intergenic L1MC3|LINE|L1 -61446 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 462-263 chr7 42712521 42712869 + 2 NA Intergenic Intergenic -6248 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 149-71 chr3 126629808 126629883 + 2 NA intron (NM_001173513, intron 9 of 14) L2|LINE|L2 25279 NM_001173513 114112 Hs.477475 NM_052883 ENSG00000197763 TXNRD3 TGR|TR2|TR2IT1|TRXR3|TXNRD3IT1|TXNRD3NB|TXNRD3NT1 thioredoxin reductase 3 protein-coding 290-265 chr22 47437944 47438097 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 49091 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 222-19 chr1 200854898 200855067 + 2 NA intron (NM_001297707, intron 15 of 17) intron (NM_001297707, intron 15 of 17) -17999 NM_005298 2848 Hs.534316 NM_005298 ENSG00000170128 GPR25 - G protein-coupled receptor 25 protein-coding 533-150 chr4 37054230 37054722 + 2 NA Intergenic L1P1|LINE|L1 52697 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 429-173 chr20 13513271 13513568 + 2 NA intron (NR_136631, intron 10 of 13) GA-rich|Low_complexity|Low_complexity 125513 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 325-340 chr3 26635328 26635580 + 2 NA intron (NM_001317810, intron 2 of 2) MLT1A|LTR|ERVL-MaLR 10787 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 368-310 chr3 173817807 173818049 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 102868 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 398-198 chr3 10791875 10792207 + 2 NA Intergenic Intergenic -24187 NM_001317406 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 352-181 chr17 43092997 43093323 + 2 NA exon (NM_007300, exon 10 of 24) exon (NM_007300, exon 10 of 24) 30955 NM_007298 672 Hs.194143 NM_007294 ENSG00000012048 BRCA1 BRCAI|BRCC1|BROVCA1|FANCS|IRIS|PNCA4|PPP1R53|PSCP|RNF53 BRCA1 DNA repair associated protein-coding 392-315 chr8 18160213 18160424 + 2 NA Intergenic L1MC|LINE|L1 -10149 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 354-412 chr6 156850109 156850333 + 2 NA intron (NM_017519, intron 2 of 18) intron (NM_017519, intron 2 of 18) -70490 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 411-43 chr10 117045370 117045579 + 2 NA intron (NM_001258300, intron 2 of 17) L1MCb|LINE|L1 -39897 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 265-17 chr1 164756776 164757013 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 17747 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 599-63 chr2 164071537 164072008 + 2 NA Intergenic MIR|SINE|MIR -335764 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 220-2 chr1 49485565 49485731 + 2 NA intron (NR_136623, intron 2 of 12) L1MA2|LINE|L1 -13563 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 350-22 chr1 171276999 171277218 + 2 NA intron (NM_001282694, intron 3 of 7) MIR3|SINE|MIR 19185 NM_001282692 2326 Hs.1424 NM_002021 ENSG00000010932 FMO1 - flavin containing dimethylaniline monoxygenase 1 protein-coding 414-296 chr7 14998275 14998613 + 2 NA Intergenic Intergenic -23586 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 319-529 chr8 79058168 79058460 + 2 NA Intergenic Intergenic 220785 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 433-46 chr11 62234751 62235160 + 2 NA Intergenic L1PB1|LINE|L1 -7284 NM_006551 10647 Hs.204096 NM_006551 ENSG00000124935 SCGB1D2 LIPB|LPHB|LPNB secretoglobin family 1D member 2 protein-coding 334-558 chr8 143409810 143410047 + 2 NA Intergenic Intergenic -7751 NR_126358 104326051 Hs.202140 NR_126358 ENSG00000254338 MAFA-AS1 TCONS_00014882 MAFA antisense RNA 1 ncRNA 316-472 chr6 5575533 5575771 + 2 NA intron (NM_006567, intron 5 of 6) L1MC4|LINE|L1 -117577 NR_125847 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 494-33 chr11 7500710 7501064 + 2 NA intron (NM_198474, intron 2 of 2) intron (NM_198474, intron 2 of 2) -12878 NR_147792 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 705-107 chr9 32371026 32371613 + 2 NA Intergenic Intergenic -13284 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 153-53 chr2 82058415 82058535 + 2 NA Intergenic L1MA8|LINE|L1 -591529 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 270-412 chr8 128294463 128294663 + 2 NA Intergenic Intergenic 144447 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 232-40 chr10 90879836 90880050 + 2 NA intron (NM_006413, intron 5 of 10) intron (NM_006413, intron 5 of 10) 7969 NM_001104546 10556 Hs.139120 NM_006413 ENSG00000148688 RPP30 TSG15 ribonuclease P/MRP subunit p30 protein-coding 263-378 chr7 5099861 5100050 + 2 NA Intergenic AluSg|SINE|Alu 27895 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 181-6 chr1 150803355 150803469 + 2 NA intron (NM_000396, intron 5 of 7) intron (NM_000396, intron 5 of 7) 4848 NM_000396 1513 Hs.632466 NM_000396 ENSG00000143387 CTSK CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD cathepsin K protein-coding 365-201 chr2 116058896 116059112 + 2 NA Intergenic Intergenic 715189 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 539-12 chr1 115450514 115450968 + 2 NA Intergenic Intergenic -112505 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 625-3 chr1 83650478 83650926 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 204648 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 441-176 chr4 32803837 32804128 + 2 NA Intergenic MER66-int|LTR|ERV1 452944 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 250-161 chr17 53377446 53377594 + 2 NA Intergenic L1PA16|LINE|L1 392015 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 196-64 chr13 67472464 67472617 + 2 NA Intergenic Intergenic 100153 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 346-464 chr7 49997561 49997870 + 2 NA intron (NM_001159878, intron 6 of 7) ERVL-B4-int|LTR|ERVL 95531 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 188-106 chr2 134888304 134888433 + 2 NA intron (NR_036549, intron 1 of 4) L1MC4|LINE|L1 30238 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 302-248 chr20 47683492 47683783 + 2 NA intron (NM_198596, intron 6 of 20) MER3|DNA|hAT-Charlie 102427 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 329-131 chr12 103160001 103160197 + 2 NA intron (NR_126333, intron 3 of 6) intron (NR_126333, intron 3 of 6) 8257 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 282-344 chr4 73731881 73732048 + 2 NA Intergenic Intergenic -8605 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 332-554 chr8 134326032 134326234 + 2 NA Intergenic Intergenic -271938 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 543-104 chr18 12953670 12954064 + 2 NA intron (NM_031216, intron 2 of 8) intron (NM_031216, intron 2 of 8) 5856 NM_001013437 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 301-370 chr5 123776087 123776355 + 2 NA Intergenic Intergenic 230804 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 190-19 chr10 88105471 88105632 + 2 NA Intergenic Intergenic 241926 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 819-15 chr19 37135548 37136222 + 2 NA Intergenic Intergenic 36551 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 300-175 chr19 38458334 38458562 + 2 NA intron (NM_001042723, intron 18 of 104) intron (NM_001042723, intron 18 of 104) 24748 NM_000540 6261 Hs.466664 NM_000540 ENSG00000196218 RYR1 CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR ryanodine receptor 1 protein-coding 219-376 chr9 26966040 26966195 + 2 NA intron (NM_001099224, intron 2 of 13) L1PB4|LINE|L1 9705 NM_001349928 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 343-30 chr1 177374030 177374285 + 2 NA Intergenic Intergenic 22571 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 281-428 chr8 36475588 36475771 + 2 NA Intergenic Intergenic -308695 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 301-193 chr2 16002470 16002637 + 2 NA Intergenic Intergenic -47874 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 212-208 chr3 58248739 58248893 + 2 NA intron (NM_020676, intron 1 of 8) L1ME4b|LINE|L1 11024 NM_001320126 57406 Hs.476454 NM_020676 ENSG00000163686 ABHD6 - abhydrolase domain containing 6 protein-coding 352-378 chr4 94180295 94180551 + 2 NA intron (NR_125922, intron 1 of 8) MER92-int|LTR|ERV1 27133 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 470-8 chr1 152151484 152151891 + 2 NA Intergenic Intergenic 7541 NM_001122965 126638 Hs.376144 NM_152364 ENSG00000215853 RPTN - repetin protein-coding 409-322 chrX 99755793 99756166 + 2 NA Intergenic L1M6|LINE|L1 654294 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 274-391 chr8 92184315 92184526 + 2 NA Intergenic Intergenic -81035 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 309-60 chr10 81630234 81630408 + 2 NA Intergenic Intergenic -244873 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 482-221 chr6 44527770 44528135 + 2 NA Intergenic Intergenic 23929 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 228-159 chr2 49975702 49975878 + 2 NA intron (NM_001330093, intron 21 of 22) L1MC4a|LINE|L1 -1587 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 441-55 chr12 58779455 58779751 + 2 NA intron (NR_120452, intron 1 of 7) L1M4|LINE|L1 2113 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 311-502 chr8 81053899 81054083 + 2 NA intron (NM_018440, intron 2 of 8) MER58A|DNA|hAT-Charlie 58077 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 364-449 chr8 101809192 101809401 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -18327 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 363-156 chr15 62128643 62128863 + 2 NA Intergenic L1MCa|LINE|L1 36532 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 373-340 chr5 142647347 142647651 + 2 NA intron (NM_001144935, intron 1 of 3) MER34A1|LTR|ERV1 -3198 NM_001257210 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 540-106 chr19 58143667 58144165 + 2 NA intron (NM_024620, intron 1 of 3) AluSq2|SINE|Alu 6873 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 301-486 chr9 99863489 99863737 + 2 NA intron (NM_006981, intron 7 of 7) intron (NM_006981, intron 7 of 7) 41728 NM_006981 8013 Hs.279522 NM_006981 ENSG00000119508 NR4A3 CHN|CSMF|MINOR|NOR1|TEC nuclear receptor subfamily 4 group A member 3 protein-coding 485-203 chr4 44550843 44551280 + 2 NA Intergenic Intergenic 100580 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 343-255 chr2 107480554 107480814 + 2 NA Intergenic L1MEf|LINE|L1 -48735 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 303-240 chr2 235366371 235366615 + 2 NA Intergenic Intergenic -127550 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 301-51 chr10 108173920 108174123 + 2 NA Intergenic L1MC4a|LINE|L1 -104728 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 440-165 chr3 97535789 97536101 + 2 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 96338 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 420-96 chr16 75377069 75377466 + 2 NA intron (NM_006324, intron 5 of 6) intron (NM_006324, intron 5 of 6) 56236 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 450-24 chr1 246826871 246827157 + 2 NA Intergenic L1MB8|LINE|L1 37397 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 272-229 chr2 205666610 205666810 + 2 NA Intergenic L1MA5|LINE|L1 -15790 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 300-387 chr6 52429787 52429972 + 2 NA intron (NR_033327, intron 2 of 9) L1PB1|LINE|L1 8871 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 184-177 chr8 137575037 137575182 + 2 NA Intergenic Intergenic -161521 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 240-46 chr10 51030950 51031179 + 2 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 37488 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 213-160 chr20 32995230 32995397 + 2 NA intron (NM_080675, intron 8 of 12) L1MEg|LINE|L1 9120 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 305-408 chr4 144368811 144369070 + 2 NA Intergenic L1MB8|LINE|L1 -228222 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 233-384 chr8 123969125 123969309 + 2 NA intron (NM_001039112, intron 5 of 40) MIR3|SINE|MIR 71565 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 374-260 chr3 126326646 126326920 + 2 NA Intergenic Intergenic 30625 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 435-135 chr2 228206705 228207095 + 2 NA Intergenic Intergenic -25213 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 418-192 chr4 97876807 97877103 + 2 NA intron (NM_174952, intron 8 of 10) L1MA7|LINE|L1 266521 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 381-374 chr8 36080335 36080589 + 2 NA Intergenic L1PA13|LINE|L1 -370142 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 319-12 chr1 90226796 90227073 + 2 NA Intergenic L1MEf|LINE|L1 231824 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 327-199 chr17 62088294 62088567 + 2 NA Intergenic (GCA)n|Simple_repeat|Simple_repeat -23152 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 174-19 chr11 23064085 23064214 + 2 NA Intergenic L1MD1|LINE|L1 -203675 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 473-138 chr2 100494508 100494789 + 2 NA Intergenic Intergenic 24166 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 587-72 chr2 79747711 79748143 + 2 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) -98568 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 260-198 chr2 17536998 17537184 + 2 NA Intergenic AluJr|SINE|Alu -2881 NM_001366803 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 219-185 chr2 156095638 156095821 + 2 NA intron (NR_110250, intron 1 of 3) L2|LINE|L2 159202 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 355-5 chr1 37058866 37059213 + 2 NA Intergenic Intergenic -24524 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 274-153 chr16 64318546 64318807 + 2 NA Intergenic Intergenic 803387 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 139-7 chr10 67095729 67095828 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 83512 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 326-353 chr3 125637209 125637451 + 2 NA Intergenic MER9a1|LTR|ERVK -41833 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 325-497 chr7 41472916 41473154 + 2 NA Intergenic Intergenic -220884 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 650-38 chr17 61453434 61453822 + 2 NA intron (NM_001321120, intron 1 of 8) intron (NM_001321120, intron 1 of 8) 1206 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 194-99 chr2 168603400 168603578 + 2 NA intron (NM_001256126, intron 3 of 10) intron (NM_001256126, intron 3 of 10) 20546 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 324-309 chr20 37446592 37446781 + 2 NA Intergenic Intergenic 73617 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 315-42 chr10 7309783 7310034 + 2 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 99433 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 223-14 chr1 147894551 147894757 + 2 NA Intergenic MER8|DNA|TcMar-Tigger -8141 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 221-221 chr4 80980012 80980179 + 2 NA Intergenic L2c|LINE|L2 -50613 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 302-268 chr22 32703066 32703356 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -97605 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 310-167 chr16 26697684 26697923 + 2 NA Intergenic Intergenic -369124 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 191-216 chr8 104426725 104426866 + 2 NA intron (NM_001385, intron 6 of 9) intron (NM_001385, intron 6 of 9) 40260 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 310-422 chr5 118343796 118344051 + 2 NA Intergenic Intergenic 61349 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 504-276 chr9 81412028 81412351 + 2 NA Intergenic L1MD3|LINE|L1 277346 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 214-172 chr2 157164258 157164395 + 2 NA Intergenic MER52A|LTR|ERV1 -93379 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 311-512 chr8 96780965 96781168 + 2 NA intron (NM_016134, intron 1 of 7) MER5C|DNA|hAT-Charlie 135824 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 322-559 chr9 8528332 8528535 + 2 NA intron (NM_130392, intron 4 of 30) intron (NM_130392, intron 4 of 30) 205513 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 155-81 chr5 102175305 102175406 + 2 NA Intergenic Intergenic 120929 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 290-60 chr10 83828397 83828601 + 2 NA Intergenic MLT2D|LTR|ERVL -151410 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 183-110 chr4 118139019 118139156 + 2 NA intron (NM_004784, intron 5 of 13) intron (NM_004784, intron 5 of 13) 104601 NM_004784 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 226-369 chr8 139282832 139283001 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -368875 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 136-50 chr20 18935182 18935268 + 2 NA Intergenic L1PB1|LINE|L1 -105022 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 434-279 chr8 59442059 59442335 + 2 NA Intergenic L1MA2|LINE|L1 322987 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 272-248 chr22 20665251 20665478 + 2 NA Intergenic L1M4|LINE|L1 -24191 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 190-58 chr14 71309018 71309162 + 2 NA Intergenic Intergenic -11386 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 281-259 chr20 46667539 46667727 + 2 NA intron (NM_001193340, intron 2 of 12) MIRb|SINE|MIR -16174 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 154-113 chrX 143756933 143757079 + 2 NA Intergenic Intergenic -36338 NM_001009615 494119 NM_001009615 ENSG00000268988 SPANXN2 CT11.7|SPANX-N2 SPANX family member N2 protein-coding 194-42 chr12 80047639 80047751 + 2 NA Intergenic L1MB7|LINE|L1 -51842 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 443-54 chr11 63177439 63177800 + 2 NA intron (NM_199352, intron 6 of 8) L1MA4|LINE|L1 -33398 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 352-35 chr10 10250296 10250574 + 2 NA Intergenic L1MEc|LINE|L1 191713 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 242-318 chr5 114968068 114968269 + 2 NA Intergenic L1MA9|LINE|L1 -194755 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 368-29 chr1 186654113 186654399 + 2 NA Intergenic L2|LINE|L2 26167 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 359-428 chr6 90638930 90639251 + 2 NA Intergenic Intergenic -52018 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 315-408 chr6 9549502 9549734 + 2 NA Intergenic MLT2A1|LTR|ERVL -854884 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 330-354 chr3 102770807 102771133 + 2 NA Intergenic Intergenic 335955 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 159-78 chr6 10138991 10139123 + 2 NA Intergenic Intergenic -265445 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 350-532 chr8 119331224 119331530 + 2 NA Intergenic MER21B|LTR|ERVL 6206 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 419-269 chr7 29831354 29831635 + 2 NA intron (NM_001080529, intron 1 of 8) MLT2B2|LTR|ERVL 24940 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 718-99 chr9 113027899 113028491 + 2 NA Intergenic Intergenic -16003 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 202-249 chr8 40070199 40070395 + 2 NA Intergenic L2|LINE|L2 -83185 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 238-303 chr5 115324517 115324722 + 2 NA Intergenic Intergenic -27965 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 548-190 chr5 116010310 116010826 + 2 NA intron (NM_173800, intron 13 of 19) intron (NM_173800, intron 13 of 19) -40898 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 464-146 chr20 41865113 41865447 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -246903 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 174-89 chr3 88372308 88372424 + 2 NA intron (NM_001368167, intron 2 of 2) L1M4a1|LINE|L1 33910 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 326-402 chr5 37049536 37049728 + 2 NA intron (NM_015384, intron 40 of 45) MamRTE1|LINE|RTE-BovB 172863 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 324-525 chr8 71780747 71780964 + 2 NA Intergenic Intergenic -62268 NR_033652 100132891 Hs.137674 NR_033651 ENSG00000235531 MSC-AS1 - MSC antisense RNA 1 ncRNA 195-229 chr7 91438429 91438604 + 2 NA Intergenic L2b|LINE|L2 174083 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 449-164 chr3 68291180 68291536 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -209279 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 429-195 chr3 85408265 85408520 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 22682 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 330-249 chr2 21956667 21956903 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -246133 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 341-366 chr4 23735971 23736185 + 2 NA Intergenic Intergenic 145214 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 264-85 chr12 2065524 2065726 + 2 NA intron (NM_199460, intron 1 of 49).2 L2c|LINE|L2 12340 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 213-59 chr11 97938372 97938572 + 2 NA Intergenic L1ME3D|LINE|L1 -1082477 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 416-120 chr14 59558234 59558634 + 2 NA intron (NM_001164399, intron 7 of 19) L2a|LINE|L2 18378 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 255-440 chr8 131930103 131930311 + 2 NA intron (NM_001323557, intron 1 of 22) L2a|LINE|L2 13434 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 344-478 chr8 27524732 27524926 + 2 NA intron (NM_001979, intron 11 of 18) L2c|LINE|L2 33686 NM_001256484 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 387-94 chr13 31380804 31381141 + 2 NA Intergenic Intergenic 180997 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 193-198 chr8 104065109 104065268 + 2 NA intron (NM_001348499, intron 19 of 23) intron (NM_001348499, intron 19 of 23) -158147 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 245-269 chr5 3044717 3044915 + 2 NA Intergenic Intergenic 126962 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 347-459 chr7 34207079 34207391 + 2 NA Intergenic Intergenic 301696 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 248-245 chr3 78341325 78341553 + 2 NA Intergenic Intergenic -292476 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 383-383 chr8 82707556 82707927 + 2 NA Intergenic Intergenic -204363 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 511-121 chr2 77428378 77428752 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 93811 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 297-463 chr8 76759533 76759763 + 2 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -76373 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 634-61 chr15 69912457 69912920 + 2 NA Intergenic MIRb|SINE|MIR 77454 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 290-379 chr6 26205575 26205757 + 2 NA TTS (NM_003545) TTS (NM_003545) 1021 NM_003545 8367 Hs.662174 NM_003545 ENSG00000276966 HIST1H4E H4/j|H4FJ histone cluster 1 H4 family member e protein-coding 333-300 chr20 14418791 14419090 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -81273 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 274-190 chr2 14310770 14310969 + 2 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 90089 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 777-32 chr2 46218006 46218697 + 2 NA Intergenic L1MEg|LINE|L1 -79056 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 462-143 chr2 128895525 128895868 + 2 NA Intergenic L1ME4a|LINE|L1 31096 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 386-389 chrX 66568686 66568958 + 2 NA Intergenic L1M1|LINE|L1 47208 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 562-9 chr1 171006535 171006920 + 2 NA intron (NM_001163629, intron 15 of 21) L1M3a|LINE|L1 71193 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 232-332 chr6 129082574 129082798 + 2 NA intron (NM_000426, intron 3 of 64) intron (NM_000426, intron 3 of 64) 199545 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 323-132 chr14 26024760 26024931 + 2 NA Intergenic Intergenic 528585 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 443-68 chr12 58691590 58691926 + 2 NA intron (NR_120452, intron 1 of 7) AluSz6|SINE|Alu 89958 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 332-408 chr5 40540943 40541117 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -138885 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 453-289 chr8 117353429 117353744 + 2 NA Intergenic L1ME2z|LINE|L1 -167127 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 294-397 chr5 167013089 167013345 + 2 NA Intergenic Intergenic -60025 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 350-134 chr14 57438410 57438732 + 2 NA Intergenic L1MA3|LINE|L1 47985 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 342-31 chr1 151362895 151363102 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 9707 NM_001258288 8991 Hs.632460 NM_003944 ENSG00000143416 SELENBP1 EHMTO|HEL-S-134P|LPSB|MTO|SBP56|SP56|hSBP selenium binding protein 1 protein-coding 481-210 chr3 178195408 178195764 + 2 NA Intergenic Intergenic -223615 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 517-17 chr1 194945944 194946305 + 2 NA Intergenic Intergenic 1142591 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 276-90 chr11 103007550 103007761 + 2 NA Intergenic Intergenic -51923 NM_002427 4322 Hs.2936 NM_002427 ENSG00000137745 MMP13 CLG3|MANDP1|MDST|MMP-13 matrix metallopeptidase 13 protein-coding 286-374 chr5 168224947 168225141 + 2 NA intron (NM_001368145, intron 21 of 26) intron (NM_001368145, intron 21 of 26) 7328 NR_109894 101927862 Hs.659376 NR_109894 ENSG00000253978 CTB-178M22.2 - uncharacterized LOC101927862 ncRNA 143-84 chr8 86821670 86821781 + 2 NA Intergenic Intergenic -44690 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 262-344 chr5 58755152 58755306 + 2 NA intron (NM_138453, intron 3 of 4) intron (NM_138453, intron 3 of 4) 172154 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 394-97 chr13 77849965 77850294 + 2 NA intron (NR_103853, intron 6 of 6) L1MB7|LINE|L1 31192 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 315-197 chr18 5165651 5165889 + 2 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 31487 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 339-504 chr6 137101064 137101398 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -56051 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 379-355 chr8 120502113 120502448 + 2 NA intron (NM_022045, intron 14 of 21) intron (NM_022045, intron 14 of 21) 56861 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 426-247 chr5 118852403 118852775 + 2 NA intron (NM_001308081, intron 4 of 5) L1PA16|LINE|L1 -121997 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 344-464 chr7 63102526 63102728 + 2 NA Intergenic Intergenic 201429 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 131-19 chr12 76425460 76425536 + 2 NA intron (NM_001003712, intron 3 of 22) HAL1|LINE|L1 -2213 NM_001319655 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 214-357 chr9 134945159 134945346 + 2 NA Intergenic Intergenic -27340 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 272-438 chr8 35024439 35024586 + 2 NA Intergenic L2a|LINE|L2 -210963 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 489-218 chr5 158360861 158361278 + 2 NA intron (NR_109888, intron 4 of 6) intron (NR_109888, intron 4 of 6) 48704 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 345-188 chr16 54851912 54852250 + 2 NA Intergenic Intergenic -3848 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 344-188 chr17 67540870 67541093 + 2 NA intron (NM_181671, intron 2 of 9) AluSx1|SINE|Alu -69396 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 360-504 chrX 91280833 91281178 + 2 NA Intergenic Intergenic -153834 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 360-285 chr22 44834470 44834680 + 2 NA intron (NM_181335, intron 7 of 11) L1M4|LINE|L1 82017 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 294-340 chr4 80143654 80143907 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -41490 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 289-146 chr15 39012076 39012326 + 2 NA Intergenic L1ME1|LINE|L1 -238468 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 462-31 chr10 76580588 76581034 + 2 NA Intergenic Intergenic -307233 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 313-303 chr20 15575706 15575947 + 2 NA intron (NM_001351663, intron 8 of 17) L1ME3A|LINE|L1 347488 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 113-35 chr3 41741409 41741471 + 2 NA intron (NR_136342, intron 21 of 34) L1ME4b|LINE|L1 220663 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 421-206 chr4 33011826 33012154 + 2 NA Intergenic Intergenic 660952 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 169-64 chr20 9788602 9788743 + 2 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 50404 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 162-16 chr10 38438640 38438736 + 2 NA intron (NR_024497, intron 4 of 7) (AAAAT)n|Simple_repeat|Simple_repeat 10542 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 357-46 chr10 107675176 107675416 + 2 NA Intergenic L1ME4b|LINE|L1 393997 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 241-367 chr7 45555810 45556027 + 2 NA Intergenic L1MEd|LINE|L1 -18222 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 278-382 chr6 138628927 138629070 + 2 NA Intergenic Intergenic -56429 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 352-175 chr16 79714450 79714672 + 2 NA Intergenic MIRc|SINE|MIR -55910 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 164-114 chr8 120611929 120612051 + 2 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) -149263 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 463-11 chr1 75070723 75071124 + 2 NA Intergenic L1MC2|LINE|L1 -57511 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 340-388 chr4 20146648 20146835 + 2 NA Intergenic L1MD|LINE|L1 -105164 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 264-398 chr8 5086230 5086432 + 2 NA Intergenic Intergenic -91417 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 290-209 chr2 75257410 75257593 + 2 NA Intergenic L1MB7|LINE|L1 -57981 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 308-123 chr13 27913308 27913471 + 2 NA intron (NR_047484, intron 1 of 4) intron (NR_047484, intron 1 of 4) 3902 NR_047484 100861550 Hs.416201 NR_047484 PLUT HI-LNC71|PDX1-AS1|PLUTO PDX1 associated lncRNA, upregulator of transcription ncRNA 293-301 chr4 63565328 63565512 + 2 NA Intergenic HERVL-int|LTR|ERVL 844030 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 337-101 chr11 113650165 113650446 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 56003 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 242-11 chr1 97534105 97534299 + 2 NA intron (NM_000110, intron 12 of 22) L2a|LINE|L2 -262719 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 253-78 chr11 84641594 84641733 + 2 NA intron (NM_001351274, intron 5 of 26) MIR|SINE|MIR 79279 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 270-243 chr3 98634193 98634452 + 2 NA Intergenic Intergenic -40711 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 273-98 chr12 20093732 20093908 + 2 NA intron (NR_040098, intron 2 of 2) LTR12C|LTR|ERV1 34081 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 413-103 chr15 98452903 98453197 + 2 NA intron (NM_182562, intron 4 of 6) MLT1H|LTR|ERVL-MaLR -32052 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 255-417 chr8 64134751 64135000 + 2 NA intron (NR_125826, intron 3 of 4) intron (NR_125826, intron 3 of 4) 233683 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 201-158 chr3 103411577 103411736 + 2 NA Intergenic Intergenic 112460 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 411-226 chr5 30570119 30570410 + 2 NA Intergenic Intergenic -623422 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 509-58 chr12 46745210 46745547 + 2 NA Intergenic L1P4|LINE|L1 80619 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 264-258 chr22 25786266 25786442 + 2 NA intron (NM_001318245, intron 11 of 43) L2c|LINE|L2 44166 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 403-201 chr3 122260772 122261068 + 2 NA intron (NM_001178065, intron 3 of 6) hAT-N1_Mam|DNA|hAT-Tip100? -64328 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 433-134 chr2 84361625 84361906 + 2 NA Intergenic L1PB2|LINE|L1 71083 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 373-439 chrX 39452485 39452836 + 2 NA Intergenic Intergenic -60886 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 490-208 chr4 137068425 137068765 + 2 NA intron (NR_149105, intron 2 of 3) L1PB4|LINE|L1 -125161 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 139-54 chr3 84030302 84030415 + 2 NA Intergenic Intergenic 839217 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 416-75 chr11 87332244 87332466 + 2 NA Intergenic L1MEc|LINE|L1 294421 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 433-154 chr20 42022169 42022541 + 2 NA Intergenic Intergenic -403978 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 503-93 chr14 43560837 43561196 + 2 NA Intergenic Intergenic 946267 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 384-92 chr13 47873309 47873564 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 59186 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 253-166 chr18 71922875 71923042 + 2 NA Intergenic L1PA14|LINE|L1 -140732 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 264-41 chr10 43236681 43236887 + 2 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) -7045 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 308-27 chr1 154453242 154453452 + 2 NA intron (NM_181359, intron 8 of 8) intron (NM_181359, intron 8 of 8) -46783 NR_147855 101928101 Hs.617089 NR_147855 ENSG00000228013 IL6R-AS1 - IL6R antisense RNA 1 ncRNA 209-188 chr3 13417993 13418152 + 2 NA intron (NM_024923, intron 1 of 39) intron (NM_024923, intron 1 of 39) 2250 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 255-232 chr20 49621490 49621708 + 2 NA Intergenic L2a|LINE|L2 -53462 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 300-428 chr7 49748790 49748983 + 2 NA Intergenic L1MCc|LINE|L1 -24752 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 304-375 chr4 38038838 38039088 + 2 NA intron (NM_001253912, intron 8 of 20) L1ME2z|LINE|L1 -71218 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 262-348 chr5 109957192 109957382 + 2 NA Intergenic Intergenic 74105 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 235-157 chr2 16987731 16987880 + 2 NA Intergenic L1M5|LINE|L1 -321971 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 568-195 chr8 81951413 81951801 + 2 NA Intergenic Intergenic -109321 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 250-387 chr6 163682682 163682916 + 2 NA Intergenic Intergenic -11315 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 296-381 chr5 115884920 115885073 + 2 NA intron (NM_001364122, intron 3 of 3) intron (NM_001364122, intron 3 of 3) 42509 NR_157087 1176 Hs.406191 NM_001284 ENSG00000177879 AP3S1 CLAPS3|Sigma3A adaptor related protein complex 3 subunit sigma 1 protein-coding 485-2 chr1 14395952 14396389 + 2 NA intron (NR_149058, intron 1 of 4) AluSg|SINE|Alu 23803 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 207-202 chr3 145004892 145005037 + 2 NA Intergenic Intergenic 1031883 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 267-26 chr1 177562386 177562564 + 2 NA Intergenic MIRc|SINE|MIR -138049 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 167-80 chr3 154472080 154472166 + 2 NA Intergenic L1MEg|LINE|L1 -41933 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 541-181 chr5 18829656 18830007 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 1022557 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 292-104 chr12 59692909 59693192 + 2 NA intron (NR_073055, intron 1 of 6) intron (NR_073055, intron 1 of 6) 3680 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 417-222 chr5 78494457 78494807 + 2 NA intron (NM_005779, intron 4 of 4) intron (NM_005779, intron 4 of 4) 134015 NR_110885 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 441-281 chr9 122638609 122638927 + 2 NA Intergenic Intergenic -9233 NM_001004450 347169 Hs.553710 NM_001004450 ENSG00000280094 OR1B1 OR9-26|OR9-B olfactory receptor family 1 subfamily B member 1 (gene/pseudogene) protein-coding 198-164 chr3 82494738 82494864 + 2 NA Intergenic MIR3|SINE|MIR 508659 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 288-273 chr3 115467804 115468020 + 2 NA Intergenic Intergenic -155598 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 257-403 chr8 35550617 35550795 + 2 NA intron (NM_001322818, intron 2 of 16) intron (NM_001322818, intron 2 of 16) 6314 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 372-11 chr1 56179660 56180008 + 2 NA Intergenic Intergenic 234747 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 269-18 chr1 158520806 158520991 + 2 NA Intergenic L1M3a|LINE|L1 27207 NM_001005189 391112 Hs.553780 NM_001005189 ENSG00000197532 OR6Y1 OR1-11|OR6Y2 olfactory receptor family 6 subfamily Y member 1 protein-coding 297-471 chr8 85571184 85571453 + 2 NA Intergenic Intergenic 84358 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 274-36 chr10 25378793 25379028 + 2 NA intron (NM_020752, intron 2 of 10) AluJo|SINE|Alu -202634 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 328-149 chr14 53148442 53148719 + 2 NA intron (NM_030637, intron 1 of 11) AluSq2|SINE|Alu 4743 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 337-188 chr16 5668355 5668678 + 2 NA Intergenic Intergenic 36049 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 444-149 chr3 10650451 10650840 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -23838 NR_046766 100874325 Hs.143004 NR_046766 ENSG00000224771 ATP2B2-IT2 - ATP2B2 intronic transcript 2 ncRNA 555-32 chr11 50465785 50466182 + 2 NA Intergenic ALR/Alpha|Satellite|centr 56836 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 373-218 chr2 167598585 167598913 + 2 NA Intergenic Intergenic -219923 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 480-36 chr10 105117652 105117971 + 2 NA intron (NM_014978, intron 7 of 26) intron (NM_014978, intron 7 of 26) -451595 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 296-352 chr4 173633940 173634186 + 2 NA Intergenic Intergenic 103605 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 584-41 chr14 46143735 46144134 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 79775 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 190-152 chr6 1286648 1286760 + 2 NA Intergenic Intergenic -25394 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 291-458 chr8 95830295 95830514 + 2 NA Intergenic L1MC1|LINE|L1 117944 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 281-244 chr2 213303883 213304059 + 2 NA intron (NR_047660, intron 3 of 14) L1MA3|LINE|L1 19507 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 263-308 chr5 3923731 3923952 + 2 NA Intergenic Intergenic 328009 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 262-161 chr16 65448841 65449042 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 127359 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 335-389 chr4 89082053 89082356 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -25019 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 200-206 chr5 26167757 26167873 + 2 NA Intergenic Intergenic 870771 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 225-346 chr8 42021912 42022112 + 2 NA intron (NM_001305878, intron 2 of 13) intron (NM_001305878, intron 2 of 13) -29738 NR_136589 105379393 Hs.742878 NR_136589 LOC105379393 - uncharacterized LOC105379393 ncRNA 241-142 chr17 54079860 54080057 + 2 NA Intergenic L1M4a1|LINE|L1 257031 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 190-154 chr6 45575311 45575464 + 2 NA Intergenic MIR3|SINE|MIR 153112 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 844-64 chr7 51849253 51849831 + 2 NA Intergenic Intergenic -456286 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 133-64 chr5 91600273 91600404 + 2 NA Intergenic Intergenic -217021 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 284-391 chr8 640412 640642 + 2 NA intron (NM_001303100, intron 5 of 5) intron (NM_001303100, intron 5 of 5) 90697 NM_207332 157697 Hs.655310 NM_207332 ENSG00000104714 ERICH1 HSPC319 glutamate rich 1 protein-coding 277-53 chr10 53060857 53061045 + 2 NA Intergenic L1PB3|LINE|L1 -289251 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 319-131 chr13 100945553 100945831 + 2 NA intron (NR_047687, intron 2 of 7) L2a|LINE|L2 -1328 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 354-221 chr2 128771630 128771971 + 2 NA Intergenic MER57B2|LTR|ERV1 -92800 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 335-65 chr10 73497276 73497591 + 2 NA TTS (NR_135250) TTS (NR_135250) -1409 NM_021132 5532 Hs.500067 NM_021132 ENSG00000107758 PPP3CB CALNA2|CALNB|CNA2|PP2Bbeta protein phosphatase 3 catalytic subunit beta protein-coding 495-56 chr12 124669836 124670194 + 2 NA Intergenic MER3|DNA|hAT-Charlie -102403 NM_001206654 9612 Hs.137510 NM_006312 ENSG00000196498 NCOR2 CTG26|N-CoR2|SMAP270|SMRT|SMRTE|SMRTE-tau|TNRC14|TRAC|TRAC-1|TRAC1 nuclear receptor corepressor 2 protein-coding 551-132 chr4 43126078 43126407 + 2 NA Intergenic Intergenic 232976 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 133-41 chr21 18254816 18254896 + 2 NA intron (NM_001204174, intron 1 of 5) intron (NM_001204174, intron 1 of 5) 8981 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 686-42 chr2 75414673 75415164 + 2 NA Intergenic Intergenic -109150 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 271-491 chrX 82751108 82751282 + 2 NA Intergenic Intergenic -757095 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 195-54 chr12 76716998 76717181 + 2 NA Intergenic Intergenic -46985 NM_015336 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 274-409 chr9 27104280 27104496 + 2 NA Intergenic Intergenic -4753 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 347-540 chr9 22231069 22231246 + 2 NA Intergenic LTR14B|LTR|ERVK -215667 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 353-280 chr20 31227027 31227237 + 2 NA Intergenic Intergenic -30532 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 634-112 chr4 81920985 81921606 + 2 NA Intergenic Intergenic -449388 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 171-109 chr5 136230011 136230149 + 2 NA intron (NR_133682, intron 1 of 3) L1ME3G|LINE|L1 3425 NR_133682 106478968 Hs.637713 NR_133682 ENSG00000250947 TRPC7-AS2 CTB-28J9.2 TRPC7 antisense RNA 2 ncRNA 142-21 chr14 44095076 44095201 + 2 NA Intergenic Intergenic 412145 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 349-339 chr3 120539791 120540044 + 2 NA Intergenic L1PB2|LINE|L1 -56419 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 238-10 chr1 71257064 71257292 + 2 NA Intergenic Intergenic 175854 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 263-336 chr5 141348344 141348591 + 2 NA intron (NM_018916, intron 1 of 3) intron (NM_018916, intron 1 of 3) -1794 NM_032095 56104 Hs.368160 NM_018922 ENSG00000254221 PCDHGB1 PCDH-GAMMA-B1 protocadherin gamma subfamily B, 1 protein-coding 293-416 chr7 127190587 127190766 + 2 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -24451 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 491-261 chr8 88437339 88437641 + 2 NA Intergenic L1M1|LINE|L1 -110007 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 260-118 chr13 58522446 58522699 + 2 NA Intergenic Intergenic -289455 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 313-241 chr2 33527349 33527563 + 2 NA intron (NM_015376, intron 9 of 16) intron (NM_015376, intron 9 of 16) 13581 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 546-238 chr8 113022467 113022948 + 2 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 354445 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 168-11 chr10 64141290 64141422 + 2 NA Intergenic Intergenic -619466 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 291-474 chr8 135801276 135801528 + 2 NA Intergenic Intergenic 343946 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 170-135 chr8 25754835 25754981 + 2 NA Intergenic L1ME2|LINE|L1 290505 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 295-45 chr10 37388361 37388538 + 2 NA Intergenic Intergenic 79263 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 488-285 chr9 24548009 24548329 + 2 NA Intergenic L2c|LINE|L2 -2272 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 310-338 chr3 110079572 110079812 + 2 NA Intergenic Intergenic 476864 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 358-479 chr8 86642680 86642955 + 2 NA intron (NM_019098, intron 10 of 17) intron (NM_019098, intron 10 of 17) 100858 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 358-103 chr13 33000707 33001023 + 2 NA Intergenic Intergenic -15558 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 347-263 chr20 23966876 23967214 + 2 NA Intergenic Intergenic 19830 NM_178312 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 250-296 chr3 174917796 174918041 + 2 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 58584 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 350-465 chr7 4367247 4367448 + 2 NA Intergenic Intergenic -232510 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 310-241 chr2 75451589 75451883 + 2 NA Intergenic L1MC4a|LINE|L1 -72332 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 654-86 chr4 52289106 52289586 + 2 NA Intergenic LTR102_Mam|LTR|ERVL 238042 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 206-117 chr2 77324390 77324589 + 2 NA intron (NR_146416, intron 1 of 1) L2a|LINE|L2 197887 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 545-73 chr14 71209642 71210072 + 2 NA Intergenic Intergenic -110619 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 1021-3 chr11 37890739 37891684 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -47390 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 775-25 chr14 52039650 52040310 + 2 NA intron (NM_007361, intron 8 of 21) AluSx|SINE|Alu 29079 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 268-103 chr13 90030918 90031163 + 2 NA Intergenic L1MB1|LINE|L1 88677 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 306-30 chr1 162703126 162703366 + 2 NA intron (NM_006182, intron 2 of 17) intron (NM_006182, intron 2 of 17) 70782 NM_006182 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 333-600 chr9 30431520 30431782 + 2 NA Intergenic L1MA3|LINE|L1 -23197 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 324-211 chr16 79746828 79747002 + 2 NA intron (NR_104663, intron 4 of 5) intron (NR_104663, intron 4 of 5) -23556 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 157-130 chr8 112684618 112684750 + 2 NA intron (NM_001363185, intron 13 of 66) intron (NM_001363185, intron 13 of 66) 41191 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 211-129 chr19 51940058 51940237 + 2 NA intron (NM_001031721, intron 3 of 5) intron (NM_001031721, intron 3 of 5) -8987 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 447-153 chr20 42130071 42130376 + 2 NA intron (NM_133170, intron 19 of 31) LTR33A_|LTR|ERVL -511846 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 861-17 chr20 12851169 12851703 + 2 NA Intergenic Intergenic 85527 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 203-136 chr21 29514348 29514490 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 18372 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 351-315 chr3 157280622 157280818 + 2 NA intron (NM_024621, intron 12 of 13) intron (NM_024621, intron 12 of 13) -119960 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 603-23 chr11 21556148 21556670 + 2 NA intron (NM_001288713, intron 17 of 20) intron (NM_001288713, intron 17 of 20) -636676 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 440-91 chr17 52197192 52197575 + 2 NA Intergenic Intergenic -37366 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 277-462 chrX 69045020 69045261 + 2 NA Intergenic L1M5|LINE|L1 120313 NM_001032396 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 502-75 chr13 51250998 51251410 + 2 NA intron (NM_145019, intron 3 of 4) intron (NM_145019, intron 3 of 4) 28806 NM_145019 220108 Hs.71913 NM_145019 ENSG00000150510 FAM124A - family with sequence similarity 124 member A protein-coding 469-171 chr3 23294714 23295013 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 91536 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 298-160 chr17 11010821 11010997 + 2 NA Intergenic L2a|LINE|L2 -172822 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 541-152 chr3 61964146 61964537 + 2 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 354606 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 279-11 chr1 80240444 80240657 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -295205 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 357-453 chr8 117681700 117682031 + 2 NA Intergenic Intergenic 161152 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 431-244 chr6 52472775 52473040 + 2 NA intron (NR_033327, intron 6 of 9) L1ME3A|LINE|L1 51899 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 309-151 chr14 54017101 54017389 + 2 NA Intergenic L1PREC2|LINE|L1 -60354 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 154-71 chr3 96047885 96048022 + 2 NA Intergenic Intergenic -312011 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 397-239 chr4 188304070 188304325 + 2 NA Intergenic MIRb|SINE|MIR -151381 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 247-22 chr1 187608020 187608195 + 2 NA Intergenic AluSg|SINE|Alu 164479 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 376-176 chr2 51189697 51189935 + 2 NA intron (NR_135237, intron 2 of 10) L1PA11|LINE|L1 157215 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 281-418 chr7 68910365 68910551 + 2 NA Intergenic Intergenic 687166 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 292-390 chr6 163909692 163909962 + 2 NA Intergenic Intergenic -238343 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 358-416 chr6 128781078 128781377 + 2 NA Intergenic Intergenic -101911 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 541-182 chr5 36032227 36032580 + 2 NA Intergenic MER70-int|LTR|ERVL -31381 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 221-163 chr20 43425571 43425759 + 2 NA Intergenic L1ME2z|LINE|L1 -32231 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 382-127 chr16 23656427 23656686 + 2 NA intron (NM_032486, intron 2 of 5) L1MC5a|LINE|L1 15090 NM_001199743 84516 Hs.435941 NM_032486 ENSG00000166847 DCTN5 - dynactin subunit 5 protein-coding 447-130 chr2 107925621 107925970 + 2 NA Intergenic Intergenic -60729 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 457-173 chr4 14905257 14905673 + 2 NA Intergenic Intergenic -17296 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 228-201 chr21 27953584 27953779 + 2 NA Intergenic Intergenic -59682 NR_027246 246705 Hs.505079 NM_145180 ENSG00000178457 LINC00314 C21orf94|NCRNA00314 long intergenic non-protein coding RNA 314 ncRNA 268-272 chr4 42580743 42580996 + 2 NA intron (NM_001105529, intron 10 of 35) intron (NM_001105529, intron 10 of 35) 76236 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 338-490 chr7 18286679 18286968 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -3269 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 292-259 chr21 19854822 19854968 + 2 NA Intergenic MER52-int|LTR|ERV1 44860 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 255-324 chr5 42726379 42726591 + 2 NA Intergenic Intergenic -30333 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 527-258 chr8 59079668 59079983 + 2 NA intron (NM_014729, intron 1 of 8) MSTA-int|LTR|ERVL-MaLR 39322 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 382-290 chr4 34300994 34301307 + 2 NA Intergenic L1MEg1|LINE|L1 -31403 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 316-389 chr4 43822066 43822373 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -194642 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 482-167 chr3 102094340 102094677 + 2 NA Intergenic Intergenic -69197 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 310-313 chr3 2841938 2842212 + 2 NA intron (NM_175607, intron 7 of 24) L2|LINE|L2 -50140 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 298-171 chr17 74611122 74611300 + 2 NA 3' UTR (NM_181449, exon 4 of 4) 3' UTR (NM_181449, exon 4 of 4) 11371 NR_158152 101928343 Hs.93825 NR_158152 LOC101928343 - uncharacterized LOC101928343 ncRNA 225-201 chr3 40402354 40402485 + 2 NA intron (NM_001248, intron 4 of 10) intron (NM_001248, intron 4 of 10) 15235 NM_001291961 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 387-347 chr7 64097365 64097605 + 2 NA Intergenic AluJr|SINE|Alu 52051 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 307-177 chr16 74168787 74169064 + 2 NA Intergenic Intergenic 46596 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 369-414 chr8 103790550 103790794 + 2 NA intron (NM_001348497, intron 3 of 22) L1MB7|LINE|L1 -28548 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 260-450 chr8 138134329 138134574 + 2 NA intron (NM_015912, intron 19 of 19) intron (NM_015912, intron 19 of 19) -50906 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 335-404 chr5 1235968 1236247 + 2 NA intron (NM_182632, intron 4 of 11) L1MEc|LINE|L1 10726 NM_182632 348932 Hs.213284 NM_182632 ENSG00000164363 SLC6A18 Xtrp2 solute carrier family 6 member 18 protein-coding 372-32 chr1 215299042 215299376 + 2 NA Intergenic L1MEc|LINE|L1 216472 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 322-361 chr4 14354959 14355209 + 2 NA Intergenic MLT2D|LTR|ERVL 243116 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 238-410 chr9 12655847 12656018 + 2 NA Intergenic L2c|LINE|L2 -37453 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 330-556 chr9 92064682 92064864 + 2 NA intron (NM_001368273, intron 7 of 15) L1MD1|LINE|L1 50640 NM_006415 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 259-405 chr8 104377907 104378049 + 2 NA Intergenic Intergenic 38152 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 237-340 chr7 8333457 8333638 + 2 NA intron (NR_125740, intron 3 of 5) intron (NR_125740, intron 3 of 5) -70935 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 602-100 chr5 15075216 15075642 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie 191131 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 368-243 chr2 139581848 139582199 + 2 NA Intergenic AluJo|SINE|Alu 684699 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 393-376 chr8 141736112 141736326 + 2 NA Intergenic Intergenic 50094 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 363-338 chr4 106021387 106021619 + 2 NA non-coding (NR_125928, exon 1 of 4) non-coding (NR_125928, exon 1 of 4) 975 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 554-222 chrX 116856432 116856894 + 2 NA Intergenic L1MA2|LINE|L1 -38803 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 213-173 chr3 11141852 11142025 + 2 NA intron (NM_001098213, intron 1 of 1) MIRb|SINE|MIR 4700 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 480-35 chr10 99051971 99052255 + 2 NA intron (NM_021828, intron 3 of 11) L1MEf|LINE|L1 -127545 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 305-560 chr9 71877258 71877453 + 2 NA intron (NM_001025780, intron 1 of 3) intron (NM_001025780, intron 1 of 3) 33890 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 307-514 chr9 72146098 72146312 + 2 NA intron (NM_001242507, intron 1 of 13) intron (NM_001242507, intron 1 of 13) -3146 NM_001242505 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 215-301 chr7 71764754 71764906 + 2 NA Intergenic L1MC1|LINE|L1 -457060 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 199-23 chr10 61422014 61422177 + 2 NA intron (NR_134508, intron 4 of 6) L1ME1|LINE|L1 -30544 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 240-73 chr11 24225955 24226161 + 2 NA Intergenic Intergenic -270995 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 331-61 chr10 81338303 81338557 + 2 NA Intergenic Intergenic -536764 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 333-432 chr5 15882279 15882472 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -52807 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 315-484 chr8 104163475 104163771 + 2 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -59712 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 346-343 chr4 28872932 28873252 + 2 NA Intergenic Intergenic 53510 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 351-330 chr4 8326885 8327217 + 2 NA Intergenic L1ME4c|LINE|L1 6875 NR_149125 105374374 Hs.145224 NR_149125 ENSG00000249145 LINC02517 - long intergenic non-protein coding RNA 2517 ncRNA 356-254 chr2 108239994 108240230 + 2 NA intron (NM_001008743, intron 1 of 7) intron (NM_001008743, intron 1 of 7) 144 NM_001008743 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 756-31 chr2 217138462 217139035 + 2 NA Intergenic AluSx4|SINE|Alu -143985 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 405-100 chr16 6610677 6610912 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -163015 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 495-91 chr18 41092559 41092891 + 2 NA Intergenic Intergenic 427952 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 553-16 chr10 39154018 39154367 + 2 NA Intergenic ALR/Alpha|Satellite|centr 457596 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 116-6 chr10 98616540 98616650 + 2 NA intron (NM_021828, intron 8 of 11) intron (NM_021828, intron 8 of 11) -169632 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 300-152 chr17 34501713 34501919 + 2 NA Intergenic Intergenic 77553 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 171-43 chr16 80914205 80914323 + 2 NA Intergenic Intergenic -21668 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 291-321 chr4 63014376 63014530 + 2 NA Intergenic L1MA3|LINE|L1 -852688 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 600-85 chr3 104047051 104047579 + 2 NA Intergenic Intergenic -523199 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 275-191 chr2 59982152 59982324 + 2 NA Intergenic Intergenic 400798 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 302-381 chr6 60678398 60678652 + 2 NA Intergenic Intergenic -895605 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 307-361 chr4 179441569 179441805 + 2 NA Intergenic Intergenic -1533751 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 377-83 chr12 24029147 24029474 + 2 NA intron (NM_152989, intron 4 of 17) AluJr|SINE|Alu -78278 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 390-299 chr5 99097950 99098308 + 2 NA Intergenic Intergenic -168415 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 502-31 chr10 37834264 37834685 + 2 NA intron (NR_147992, intron 5 of 8) intron (NR_147992, intron 5 of 8) 23136 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 494-258 chr6 157925941 157926333 + 2 NA intron (NM_016224, intron 10 of 17) MLT1A1|LTR|ERVL-MaLR -55726 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 304-111 chr12 60602767 60602959 + 2 NA Intergenic L1M4c|LINE|L1 913493 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 254-282 chr4 103244620 103244821 + 2 NA Intergenic Intergenic -46377 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 506-191 chr3 145162204 145162543 + 2 NA Intergenic Intergenic 906812 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 396-41 chr10 16793144 16793473 + 2 NA intron (NM_152724, intron 1 of 7) intron (NM_152724, intron 1 of 7) 24116 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 220-295 chr5 105369049 105369260 + 2 NA Intergenic L1MD|LINE|L1 269680 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 265-7 chr1 66361199 66361387 + 2 NA intron (NM_001037339, intron 2 of 9) intron (NM_001037339, intron 2 of 9) 6758 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 318-384 chr4 20154840 20155042 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -96964 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 205-141 chr2 104696981 104697134 + 2 NA Intergenic L1MC5a|LINE|L1 60662 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 586-19 chr10 15063366 15063944 + 2 NA intron (NM_018324, intron 5 of 8) Charlie1b|DNA|hAT-Charlie 19712 NM_001039702 55301 Hs.24309 NM_018324 ENSG00000152463 OLAH AURA1|SAST|TE2|THEDC1 oleoyl-ACP hydrolase protein-coding 251-80 chr13 85684381 85684563 + 2 NA Intergenic Intergenic 114947 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 306-269 chr2 237558322 237558561 + 2 NA Intergenic AluSz6|SINE|Alu -8133 NM_015893 51052 Hs.247710 NM_015893 ENSG00000071677 PRLH PRH|PRRP prolactin releasing hormone protein-coding 247-373 chr7 8467211 8467378 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 33685 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 804-15 chr12 38000176 38000843 + 2 NA Intergenic ALR/Alpha|Satellite|centr -316265 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 424-168 chr3 8524596 8524958 + 2 NA intron (NM_001278233, intron 1 of 4) AluJo|SINE|Alu 22954 NM_001278235 29995 Hs.475353 NM_014583 ENSG00000071282 LMCD1 - LIM and cysteine rich domains 1 protein-coding 246-58 chr10 119096271 119096472 + 2 NA Intergenic AluSz|SINE|Alu -7742 NR_130122 404636 Hs.434241 NM_207009 ENSG00000119979 DENND10 FAM45A DENN domain containing 10 protein-coding 333-382 chr4 31040420 31040688 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -130590 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 281-425 chr8 4380599 4380849 + 2 NA intron (NM_033225, intron 3 of 69) L1MC3|LINE|L1 614190 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 281-233 chr2 149772748 149772973 + 2 NA intron (NR_145421, intron 3 of 4) L1ME3|LINE|L1 86331 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 349-159 chr14 55014758 55015048 + 2 NA intron (NM_001008396, intron 1 of 24) intron (NM_001008396, intron 1 of 24) 12196 NM_001008396 11169 Hs.385998 NM_007086 ENSG00000198554 WDHD1 AND-1|AND1|CHTF4|CTF4 WD repeat and HMG-box DNA binding protein 1 protein-coding 243-264 chr21 32175090 32175256 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -88878 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 531-54 chr13 93189918 93190266 + 2 NA Intergenic Intergenic -36715 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 374-383 chr8 68667615 68667853 + 2 NA intron (NR_146187, intron 8 of 13) intron (NR_146187, intron 8 of 13) -336243 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 527-183 chr3 165927993 165928447 + 2 NA Intergenic Intergenic -90797 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 360-335 chr4 107482174 107482381 + 2 NA Intergenic L1PA17|LINE|L1 237957 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 230-117 chr14 79468863 79469067 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 189585 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 377-56 chr10 120189221 120189542 + 2 NA Intergenic L1M4b|LINE|L1 165842 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 531-166 chr3 188971963 188972299 + 2 NA Intergenic Intergenic -24492 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 252-285 chr3 190689743 190689893 + 2 NA Intergenic L2b|LINE|L2 172876 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 309-521 chr7 95653293 95653517 + 2 NA Intergenic AluJo|SINE|Alu -56889 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 323-521 chr7 143976575 143976871 + 2 NA Intergenic Intergenic 16796 NM_012369 26211 Hs.553595 NM_012369 ENSG00000213215 OR2F1 7M1-2|OLF3|OR14-60|OR2F3|OR2F3P|OR2F4|OR2F5|OR7-139|OR7-140 olfactory receptor family 2 subfamily F member 1 (gene/pseudogene) protein-coding 255-150 chr16 80216842 80217024 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -323801 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 171-39 chr16 7268068 7268186 + 2 NA intron (NM_018723, intron 4 of 15) Tigger3a|DNA|TcMar-Tigger -64718 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 350-514 chr8 81949935 81950220 + 2 NA Intergenic Intergenic -107791 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 245-364 chr9 25442739 25442917 + 2 NA Intergenic LTR16D|LTR|ERVL 236030 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 460-117 chr18 35586763 35587102 + 2 NA Intergenic L1MD1|LINE|L1 -4805 NR_039771 100616257 NR_039771 ENSG00000283514 MIR3975 - microRNA 3975 ncRNA 313-173 chr15 95695510 95695782 + 2 NA Intergenic L1MCc|LINE|L1 262553 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 367-131 chr14 86986143 86986375 + 2 NA Intergenic Intergenic 80481 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 264-105 chr13 36206403 36206594 + 2 NA intron (NM_001198910, intron 6 of 15) L1ME3G|LINE|L1 8058 NM_017826 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 233-381 chr8 120962088 120962250 + 2 NA Intergenic L1MB7|LINE|L1 -150123 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 320-125 chr12 95664895 95665077 + 2 NA intron (NM_001329701, intron 9 of 9) intron (NM_001329701, intron 9 of 9) 15731 NR_077225 100132594 Hs.676211 NR_077225 ENSG00000257150 PGAM1P5 - phosphoglycerate mutase 1 pseudogene 5 pseudo 195-123 chr2 236467110 236467265 + 2 NA intron (NR_073043, intron 5 of 19) L1MEi|LINE|L1 36510 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 216-106 chr14 86130966 86131127 + 2 NA Intergenic L1MEg|LINE|L1 196368 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 596-19 chr10 17097301 17097740 + 2 NA intron (NM_001081, intron 14 of 66) L1MEg|LINE|L1 32297 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 467-38 chr11 4105477 4105803 + 2 NA intron (NM_001318064, intron 2 of 17) AluJo|SINE|Alu -10438 NM_001318065 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 156-99 chr7 63016302 63016410 + 2 NA Intergenic Intergenic 287700 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 499-202 chr5 33129238 33129598 + 2 NA Intergenic Intergenic -100317 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 418-279 chr8 49862199 49862552 + 2 NA Intergenic L1MEi|LINE|L1 -47421 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 439-296 chr8 141892632 141892934 + 2 NA Intergenic Intergenic -106470 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 282-325 chr4 31161739 31161980 + 2 NA Intergenic Intergenic -9285 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 854-26 chr2 130944755 130945469 + 2 NA intron (NM_001367493, intron 3 of 13) L1MEf|LINE|L1 108198 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 224-170 chr2 239189316 239189501 + 2 NA intron (NM_006037, intron 4 of 26) intron (NM_006037, intron 4 of 26) 6049 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 336-281 chr2 114141141 114141439 + 2 NA Intergenic LTR33|LTR|ERVL -161306 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 373-60 chr10 86810629 86810886 + 2 NA intron (NM_004329, intron 1 of 12) L1MB7|LINE|L1 54118 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 170-46 chr14 54138197 54138321 + 2 NA Intergenic Intergenic -181368 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 317-257 chr2 161678499 161678708 + 2 NA intron (NM_001354451, intron 1 of 25) L1ME3|LINE|L1 54187 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 332-585 chrX 45608315 45608568 + 2 NA Intergenic L1PA15|LINE|L1 103053 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 395-6 chr1 67111990 67112253 + 2 NA intron (NM_001276352, intron 5 of 8) MIR|SINE|MIR 22849 NM_001276352 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 412-62 chr12 1179219 1179489 + 2 NA intron (NR_027948, intron 7 of 19) L2c|LINE|L2 151606 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 272-351 chr5 83289265 83289448 + 2 NA intron (NM_022550, intron 7 of 7) L1MCb|LINE|L1 -182318 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 297-494 chr8 130709490 130709680 + 2 NA Intergenic L1ME3Cz|LINE|L1 -265911 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 447-216 chr5 105919921 105920183 + 2 NA Intergenic L1ME4a|LINE|L1 820578 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 241-299 chr5 45539126 45539275 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 157180 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 249-399 chr8 9668900 9669118 + 2 NA intron (NM_003747, intron 3 of 26) intron (NM_003747, intron 3 of 26) -72663 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 278-135 chr15 95674157 95674359 + 2 NA Intergenic Intergenic 241165 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 173-39 chr14 86186285 86186428 + 2 NA Intergenic Intergenic 251678 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 349-268 chr2 115449493 115449747 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 105805 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 317-513 chr8 136183958 136184132 + 2 NA Intergenic MLT2A2|LTR|ERVL -346753 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 400-157 chr2 45715301 45715610 + 2 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 63780 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 337-218 chr18 11388716 11388896 + 2 NA Intergenic Intergenic -65672 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 303-477 chr8 134728938 134729202 + 2 NA Intergenic Intergenic -16039 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 341-212 chr18 75354448 75354625 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 73167 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 388-45 chr10 54746440 54746817 + 2 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 54603 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 371-151 chr18 70812272 70812490 + 2 NA Intergenic Intergenic -161427 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 291-437 chr8 57910315 57910478 + 2 NA Intergenic Intergenic -67962 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 658-43 chr14 72204906 72205391 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 271621 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 214-225 chr3 171340142 171340295 + 2 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) 120187 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 128-15 chr12 117751977 117752077 + 2 NA intron (NM_173598, intron 4 of 19) MamRep434|DNA|TcMar-Tigger 216963 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 332-288 chr2 238795859 238796131 + 2 NA Intergenic Intergenic 51912 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 229-211 chr2 179926037 179926243 + 2 NA Intergenic L1ME2|LINE|L1 -64528 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 306-476 chr7 67554577 67554792 + 2 NA Intergenic Intergenic 218708 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 569-112 chr22 35073598 35074154 + 2 NA intron (NM_001303508, intron 2 of 4) L2b|LINE|L2 7718 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 629-39 chr14 62547431 62548054 + 2 NA Intergenic L1PA13|LINE|L1 -407769 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 386-31 chr10 39395345 39395643 + 2 NA Intergenic ALR/Alpha|Satellite|centr 698898 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 251-288 chr5 24024885 24025070 + 2 NA intron (NR_131245, intron 4 of 4) L1PB1|LINE|L1 73629 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 246-252 chr3 48438307 48438477 + 2 NA intron (NM_024661, intron 1 of 3) L2a|LINE|L2 1727 NM_001256966 79714 Hs.187657 NM_024661 ENSG00000164051 CCDC51 - coiled-coil domain containing 51 protein-coding 314-371 chr3 38760200 38760389 + 2 NA intron (NM_006514, intron 7 of 26) MLT1H|LTR|ERVL-MaLR 33716 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 262-146 chr15 86307820 86308010 + 2 NA intron (NR_046012, intron 2 of 3) L1ME3D|LINE|L1 9053 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 390-308 chr5 150887998 150888271 + 2 NA intron (NM_001346557, intron 3 of 3) L1PREC2|LINE|L1 16849 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 537-77 chr16 13787970 13788328 + 2 NA Intergenic AluSg|SINE|Alu -132008 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 376-339 chr5 179159347 179159556 + 2 NA intron (NM_014244, intron 5 of 21) MADE1|DNA|TcMar-Mariner 99078 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 172-121 chr7 8533671 8533770 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 100111 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 149-106 chr9 87027642 87027720 + 2 NA intron (NR_027471, intron 1 of 1) L2c|LINE|L2 14445 NR_027471 440173 Hs.127361 NR_027471 ENSG00000269994 LOC440173 - uncharacterized LOC440173 ncRNA 389-86 chr12 113227963 113228265 + 2 NA intron (NM_001143819, intron 3 of 28) MIRb|SINE|MIR 6650 NM_001143819 53373 Hs.524763 NM_017901 ENSG00000186815 TPCN1 TPC1 two pore segment channel 1 protein-coding 449-296 chr9 118582937 118583365 + 2 NA Intergenic Intergenic -96520 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 297-376 chr5 93966652 93966943 + 2 NA intron (NR_028080, intron 3 of 8) L2c|LINE|L2 144866 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 433-312 chrX 132323061 132323449 + 2 NA intron (NR_110410, intron 2 of 2) intron (NR_110410, intron 2 of 2) 90320 NM_001170702 55796 Hs.105134 NM_018388 ENSG00000076770 MBNL3 CHCR|MBLX|MBLX39|MBXL muscleblind like splicing regulator 3 protein-coding 525-11 chr1 117707078 117707535 + 2 NA Intergenic Intergenic 101258 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 158-106 chr7 4084044 4084146 + 2 NA intron (NM_152744, intron 22 of 44) L1MC5a|LINE|L1 -45590 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 414-224 chr3 193349941 193350213 + 2 NA intron (NM_198505, intron 7 of 29) L1ME3G|LINE|L1 28676 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 540-77 chr15 61276294 61276681 + 2 NA Intergenic Intergenic -47185 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 219-246 chr3 174964625 174964813 + 2 NA intron (NM_207015, intron 1 of 13) L2a|LINE|L2 105385 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 259-400 chr8 90778490 90778644 + 2 NA Intergenic L1PA17|LINE|L1 -13208 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 397-118 chr17 54727096 54727354 + 2 NA Intergenic Intergenic -173466 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 324-128 chr12 117179424 117179634 + 2 NA intron (NM_015002, intron 3 of 11) L1MC5|LINE|L1 10941 NM_015002 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 337-525 chr7 82929847 82930118 + 2 NA intron (NM_033026, intron 6 of 24) L2b|LINE|L2 232902 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 331-174 chr15 86107125 86107367 + 2 NA intron (NR_120368, intron 3 of 5) intron (NR_120368, intron 3 of 5) 9471 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 309-189 chr16 48987050 48987225 + 2 NA Intergenic AluSx|SINE|Alu 294701 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 274-375 chr8 48722881 48723093 + 2 NA TTS (NM_024593) TTS (NM_024593) 12281 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 636-56 chr15 96247199 96247630 + 2 NA intron (NR_125738, intron 2 of 4) L1PA16|LINE|L1 -78632 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 533-64 chr15 83073112 83073565 + 2 NA Intergenic AluJb|SINE|Alu 6003 NR_039740 100616404 NR_039740 ENSG00000263643 MIR4515 mir-4515 microRNA 4515 ncRNA 365-227 chr2 227998274 227998614 + 2 NA intron (NM_030623, intron 7 of 10) intron (NM_030623, intron 7 of 10) 126813 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 377-371 chr7 52067235 52067537 + 2 NA Intergenic Intergenic -674130 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 749-36 chr15 69003562 69004086 + 2 NA intron (NR_033672, intron 2 of 16) MER57A-int|LTR|ERV1 -10871 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 483-50 chr12 97793768 97794130 + 2 NA Intergenic L1ME4b|LINE|L1 -37432 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 346-354 chr4 65073583 65073777 + 2 NA Intergenic MER4D1|LTR|ERV1 -69180 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 309-350 chr3 74855348 74855564 + 2 NA Intergenic Intergenic -334316 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 337-312 chr20 44005860 44006116 + 2 NA intron (NM_001098797, intron 2 of 8) L2|LINE|L2 60092 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 318-101 chr11 39717102 39717344 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 575907 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 241-60 chr11 25661062 25661269 + 2 NA Intergenic Intergenic -527958 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 131-57 chr4 77204076 77204167 + 2 NA Intergenic Intergenic 46914 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 382-299 chr4 66288073 66288356 + 2 NA Intergenic L1ME3A|LINE|L1 11390 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 277 chr1 14041486 14041720 + 2 NA Intergenic HAL1|LINE|L1 292188 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 546-198 chr5 155247376 155247768 + 2 NA Intergenic L1PB2|LINE|L1 233817 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 212-232 chr4 57814984 57815163 + 2 NA Intergenic Intergenic 389201 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 124-41 chr2 231700810 231700927 + 2 NA Intergenic Intergenic -7657 NM_002823 5757 Hs.459927 NM_002823 ENSG00000187514 PTMA TMSA prothymosin alpha protein-coding 345-124 chr12 111117990 111118296 + 2 NA intron (NM_001370598, intron 1 of 21) MER63B|DNA|hAT-Blackjack 18139 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 346-22 chr1 119437572 119437771 + 2 NA Intergenic Intergenic 22521 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 138-91 chr8 109914806 109914911 + 2 NA Intergenic L2|LINE|L2 60913 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 305-116 chr12 23153004 23153190 + 2 NA Intergenic MIRb|SINE|MIR -22539 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 283-279 chr3 7509660 7509914 + 2 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) 25497 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 309-564 chr8 131750926 131751100 + 2 NA Intergenic MER117|DNA|hAT-Charlie -153080 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 585-77 chr2 120664568 120664956 + 2 NA Intergenic L1MEg|LINE|L1 -71106 NM_001371271 286-126 chr14 69225007 69225154 + 2 NA intron (NR_034165, intron 4 of 10) L2|LINE|L2 33314 NM_001193363 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 468-140 chr2 46333310 46333709 + 2 NA intron (NM_001430, intron 1 of 15) intron (NM_001430, intron 1 of 15) 36102 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 222-81 chr12 38970527 38970738 + 2 NA Intergenic Intergenic -65041 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 339-423 chr4 116212550 116212815 + 2 NA Intergenic LTR16C|LTR|ERVL -87043 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 165-30 chr14 45352793 45352950 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -99669 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 689-97 chr8 82483130 82483532 + 2 NA Intergenic Intergenic -428773 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 218-220 chr3 102248086 102248225 + 2 NA Intergenic Intergenic 84450 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 375-5 chr1 52836114 52836324 + 2 NA Intergenic Intergenic -6541 NM_001307931 440590 Hs.658458 NM_001004339 ENSG00000203995 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 358-247 chr2 216861329 216861615 + 2 NA Intergenic Intergenic -1408 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 351-407 chr5 178929120 178929372 + 2 NA intron (NM_030613, intron 4 of 4) MSTA-int|LTR|ERVL-MaLR -11952 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 327-270 chr2 135123720 135124015 + 2 NA intron (NM_001172435, intron 8 of 24) intron (NM_001172435, intron 8 of 24) -12761 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 358-36 chr10 24598741 24598960 + 2 NA intron (NM_001367447, intron 13 of 24) MIR|SINE|MIR 23993 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 488-149 chr2 166685336 166685671 + 2 NA Intergenic AluSx1|SINE|Alu -198532 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 284-286 chr4 60481660 60481925 + 2 NA Intergenic Intergenic -440827 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 643-72 chr3 83180240 83180659 + 2 NA Intergenic Intergenic 1194307 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 564-7 chr1 59242154 59242520 + 2 NA Intergenic Intergenic -54476 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 293-318 chr4 146523580 146523761 + 2 NA Intergenic Intergenic -1699 NM_032128 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 325-265 chr2 57689458 57689628 + 2 NA Intergenic L1PA17|LINE|L1 -218108 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 346-316 chr3 69661525 69661838 + 2 NA Intergenic LTR12C|LTR|ERV1 -77783 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 553-84 chr17 51962785 51963247 + 2 NA intron (NM_001082533, intron 3 of 9) L1PA16|LINE|L1 195698 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 181-63 chr2 26306530 26306686 + 2 NA Intergenic AluJb|SINE|Alu 12441 NM_001145168 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 699-50 chr2 100535934 100536455 + 2 NA Intergenic MER21A|LTR|ERVL -26799 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 408-186 chr20 47992829 47993056 + 2 NA Intergenic MER61E|LTR|ERV1 -2825 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 241-402 chr8 120083921 120084085 + 2 NA Intergenic Intergenic -41099 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 269-54 chr10 128233474 128233637 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -52395 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 294-469 chr8 81102755 81102985 + 2 NA intron (NM_018440, intron 1 of 8) intron (NM_018440, intron 1 of 8) 9198 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 542-113 chr20 154011 154430 + 2 NA Intergenic L1MD2|LINE|L1 -3234 NM_139074 140850 Hs.99362 NM_139074 ENSG00000088782 DEFB127 C20orf73|DEF-27|DEFB-27|DEFB27|bA530N10.2|hBD-27 defensin beta 127 protein-coding 291-132 chr14 71307014 71307221 + 2 NA Intergenic Intergenic -13359 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 574-70 chr2 39806254 39806716 + 2 NA Intergenic L1PA15|LINE|L1 -27209 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 708-27 chr15 28874420 28874914 + 2 NA Intergenic AluY|SINE|Alu -11307 NM_001353790 321 Hs.618112 NM_005503 ENSG00000034053 APBA2 D15S1518E|HsT16821|LIN-10|MGC:14091|MINT2|X11-BETA|X11L amyloid beta precursor protein binding family A member 2 protein-coding 218-276 chr5 140772228 140772381 + 2 NA Intergenic L1MD1|LINE|L1 -13832 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 274-294 chr4 150430741 150430972 + 2 NA intron (NM_001367550, intron 46 of 56) intron (NM_001367550, intron 46 of 56) -148233 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 565-150 chr5 130623693 130624103 + 2 NA Intergenic HAL1|LINE|L1 541358 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 244-150 chr2 19696839 19697021 + 2 NA Intergenic Intergenic -171924 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 297-266 chr20 42118627 42118808 + 2 NA intron (NM_133170, intron 21 of 31) intron (NM_133170, intron 21 of 31) -500340 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 348-19 chr1 115186221 115186485 + 2 NA Intergenic Intergenic -96681 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 159-25 chr13 37260525 37260642 + 2 NA Intergenic HAL1b|LINE|L1 -154919 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 346-392 chr5 86928697 86928885 + 2 NA Intergenic Intergenic 181973 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 922-9 chr12 79756125 79756688 + 2 NA Intergenic L1MCc|LINE|L1 -65309 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 275-356 chr8 49689684 49689888 + 2 NA Intergenic L1PB1|LINE|L1 -177606 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 332-156 chr14 82751318 82751616 + 2 NA Intergenic Intergenic 108835 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 267-390 chr7 38610963 38611137 + 2 NA intron (NM_001635, intron 1 of 20) L1MB1|LINE|L1 20323 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 398-311 chr6 155994282 155994531 + 2 NA Intergenic Intergenic 47609 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 315-436 chr7 14347260 14347468 + 2 NA intron (NM_001350717, intron 20 of 24) L1MA9|LINE|L1 -355939 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 329-367 chr3 83592923 83593089 + 2 NA Intergenic AluY|SINE|Alu 1276569 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 261-17 chr1 113650487 113650728 + 2 NA intron (NM_001142782, intron 13 of 20) intron (NM_001142782, intron 13 of 20) 108548 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 355-313 chr3 21882425 21882662 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -74596 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 496-110 chr17 14455519 14455834 + 2 NA Intergenic HAL1|LINE|L1 151936 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 157-69 chr2 174527362 174527490 + 2 NA Intergenic L2a|LINE|L2 30646 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 345-208 chr17 71388244 71388503 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -186194 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 720-78 chr6 68061393 68062092 + 2 NA Intergenic Intergenic 6391 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 476-194 chr4 38584569 38584877 + 2 NA Intergenic Intergenic 20720 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 314-133 chr12 71231318 71231571 + 2 NA Intergenic L1M1|LINE|L1 -73445 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 308-88 chr11 99055305 99055496 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 34451 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 325-509 chr7 73914744 73914922 + 2 NA Intergenic Intergenic 53674 NM_182504 135886 Hs.647026 NM_182504 ENSG00000175877 TMEM270 WBSCR28 transmembrane protein 270 protein-coding 559-120 chr3 43352432 43352837 + 2 NA promoter-TSS (NR_046757) promoter-TSS (NR_046757) -672 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 307-202 chr18 31006744 31006984 + 2 NA intron (NM_001941, intron 12 of 15) intron (NM_001941, intron 12 of 15) 35878 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 343-41 chr10 13398479 13398754 + 2 NA Intergenic AluSx1|SINE|Alu -50318 NM_001195602 22929 Hs.124027 NM_012247 ENSG00000086475 SEPHS1 SELD|SPS|SPS1 selenophosphate synthetase 1 protein-coding 228-143 chr18 61374969 61375187 + 2 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 41648 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 284-394 chr8 15063787 15063964 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 174556 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 333-572 chr8 91975934 91976148 + 2 NA intron (NM_004349, intron 8 of 10) intron (NM_004349, intron 8 of 10) 41639 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 296-258 chr2 226579589 226579878 + 2 NA Intergenic L1MD|LINE|L1 79060 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 418-182 chr4 54765602 54765893 + 2 NA Intergenic L1MC4|LINE|L1 107819 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 358-480 chr8 91513801 91514109 + 2 NA Intergenic MIRc|SINE|MIR 264636 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 262-278 chr3 77131584 77131762 + 2 NA intron (NM_001290039, intron 2 of 26) L2a|LINE|L2 33661 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 476-180 chr3 96402305 96402695 + 2 NA Intergenic L3|LINE|CR1 42536 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 304-344 chr3 88365723 88365945 + 2 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 27378 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 258-255 chr3 41468522 41468749 + 2 NA intron (NR_136342, intron 30 of 34) L1MA7|LINE|L1 269130 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 340-342 chr22 46540125 46540404 + 2 NA Intergenic AluJo|SINE|Alu -2644 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 515-125 chr2 119750616 119750923 + 2 NA Intergenic Intergenic -9153 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 240-272 chr22 25510004 25510237 + 2 NA Intergenic Intergenic 54474 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 400-258 chr4 97014356 97014742 + 2 NA Intergenic Intergenic -352377 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 598-129 chr7 54038672 54038977 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -226893 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 513-274 chr8 47315480 47315880 + 2 NA intron (NR_104581, intron 5 of 16) L1ME2z|LINE|L1 54742 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 925-10 chr12 17454306 17455002 + 2 NA Intergenic Intergenic 134424 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 283-65 chr10 96482589 96482788 + 2 NA intron (NM_012465, intron 1 of 20) L1ME1|LINE|L1 31238 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 370-241 chr2 122761713 122762013 + 2 NA Intergenic L1MB1|LINE|L1 311618 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 241-420 chr9 24556773 24556970 + 2 NA Intergenic L2|LINE|L2 -10974 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 217-340 chr7 3098235 3098421 + 2 NA Intergenic Intergenic -54461 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 302-491 chr9 137817273 137817482 + 2 NA intron (NM_001354263, intron 23 of 26) intron (NM_001354263, intron 23 of 26) -21042 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 329-402 chr4 38633155 38633391 + 2 NA intron (NR_026804, intron 2 of 7) L1ME3G|LINE|L1 -30926 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 224-110 chr16 80766505 80766630 + 2 NA intron (NM_152342, intron 1 of 6) MIR|SINE|MIR 38031 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 293-413 chr7 119509671 119509929 + 2 NA Intergenic L1MA3|LINE|L1 397575 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 300-278 chr3 94464134 94464427 + 2 NA Intergenic Intergenic 401219 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 623-82 chr3 58553169 58553627 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -16208 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|CBAS6|THCCox acyl-CoA oxidase 2 protein-coding 213-220 chr5 12324434 12324590 + 2 NA Intergenic L1MB8|LINE|L1 -250345 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 580-10 chr1 211283484 211283924 + 2 NA intron (NM_018254, intron 6 of 10) AluJo|SINE|Alu 23757 NM_018254 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 370-112 chr12 41044703 41045036 + 2 NA intron (NM_001843, intron 23 of 23) intron (NM_001843, intron 23 of 23) 136512 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 569-139 chr4 124068897 124069359 + 2 NA Intergenic L2b|LINE|L2 294864 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 306-54 chr10 33601622 33601843 + 2 NA Intergenic L1MA10|LINE|L1 170948 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 188-19 chr10 61762798 61762938 + 2 NA intron (NM_173554, intron 6 of 6) AmnSINE1|SINE|5S-Deu-L2 99907 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 377-151 chr16 76802851 76803199 + 2 NA Intergenic MIR|SINE|MIR -65911 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 436-169 chr21 28833712 28834133 + 2 NA Intergenic MER68|LTR|ERVL 51445 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 428-112 chr19 58160279 58160623 + 2 NA Intergenic AluSx|SINE|Alu -9662 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 239-213 chr20 56332480 56332645 + 2 NA Intergenic L2|LINE|L2 -26412 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 443-38 chr10 64878317 64878739 + 2 NA Intergenic Intergenic 45990 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 329-399 chr4 31273509 31273679 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 102450 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 571-178 chr8 132841406 132841932 + 2 NA intron (NM_001277196, intron 17 of 19) L1ME4b|LINE|L1 -25289 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 405-326 chr8 102629789 102630143 + 2 NA Intergenic Intergenic 23998 NR_103760 7071 Hs.435001 NM_005655 ENSG00000155090 KLF10 EGR-alpha|EGRA|TIEG|TIEG1 Kruppel like factor 10 protein-coding 139-50 chr20 50998402 50998515 + 2 NA Intergenic L2a|LINE|L2 24649 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 408-173 chr2 182326535 182326780 + 2 NA intron (NM_005019, intron 1 of 14) L1MB4|LINE|L1 -84594 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 318-400 chr4 58985384 58985590 + 2 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) 1205 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 225-163 chr2 122952193 122952339 + 2 NA Intergenic L1PA13|LINE|L1 121215 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 452-13 chr1 171666064 171666315 + 2 NA Intergenic MIRb|SINE|MIR -13501 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 360-441 chr7 111718526 111718818 + 2 NA Intergenic L1PA15|LINE|L1 -89833 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 202-229 chr6 154581712 154581857 + 2 NA Intergenic L1MEc|LINE|L1 -71099 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 136-93 chr9 11753050 11753171 + 2 NA Intergenic Intergenic -940275 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 118-14 chr12 26295083 26295184 + 2 NA Intergenic MER105|DNA|hAT-Charlie 99560 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 292-195 chr19 35184165 35184331 + 2 NA Intergenic L1M2|LINE|L1 29513 NM_144779 53827 Hs.333418 NM_014164 ENSG00000089327 FXYD5 DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 415-216 chr5 57298007 57298362 + 2 NA Intergenic Intergenic 84110 NM_001127236 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 234-226 chr3 4374063 4374220 + 2 NA intron (NM_001164675, intron 7 of 7) L1M4|LINE|L1 70837 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 402-81 chr14 56683850 56684074 + 2 NA Intergenic L1MC2|LINE|L1 104164 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 376-66 chr11 15994526 15994814 + 2 NA intron (NM_017508, intron 12 of 14) intron (NM_017508, intron 12 of 14) -25049 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 287-276 chr4 35276578 35276785 + 2 NA Intergenic MIR|SINE|MIR 967258 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 392-62 chr12 34617227 34617432 + 2 NA Intergenic ALR/Alpha|Satellite|centr 594833 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 291-287 chr3 58130648 58130910 + 2 NA exon (NM_001164317, exon 25 of 47) exon (NM_001164317, exon 25 of 47) 39856 NR_135534 105377105 Hs.613914 NR_135534 ENSG00000244161 FLNB-AS1 - FLNB antisense RNA 1 ncRNA 169-65 chr20 55434943 55435049 + 2 NA Intergenic Intergenic -7799 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 332-41 chr1 239241443 239241720 + 2 NA Intergenic Intergenic -144987 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 183-88 chr22 47470380 47470471 + 2 NA intron (NR_109967, intron 1 of 2) intron (NR_109967, intron 1 of 2) 16686 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 228-219 chr3 106078092 106078273 + 2 NA Intergenic Intergenic -208781 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 309-127 chr13 61766979 61767237 + 2 NA Intergenic Intergenic 262440 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 545-89 chr16 80095277 80095705 + 2 NA Intergenic Intergenic 300242 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 196-186 chr4 70180415 70180574 + 2 NA Intergenic L2a|LINE|L2 -16033 NM_017855 54959 Hs.143811 NM_017855 ENSG00000109205 ODAM APIN odontogenic, ameloblast associated protein-coding 520-139 chr19 57749636 57750085 + 2 NA intron (NR_145326, intron 1 of 3) LTR53|LTR|ERVL 3045 NR_145328 284309 Hs.720254 NM_173632 ENSG00000152443 ZNF776 - zinc finger protein 776 protein-coding 350-317 chr3 98908220 98908429 + 2 NA Intergenic Intergenic -6629 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 413-219 chr4 66264654 66265046 + 2 NA Intergenic Intergenic -11974 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 281-277 chr3 4203289 4203481 + 2 NA Intergenic L1MA3|LINE|L1 -99919 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 363-387 chr6 18620032 18620298 + 2 NA intron (NR_149116, intron 4 of 7) L1MC4|LINE|L1 48381 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 254-421 chr8 112429565 112429760 + 2 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -213831 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 304-404 chr5 15185114 15185313 + 2 NA Intergenic L1MEc|LINE|L1 81347 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 255-469 chrX 77520445 77520690 + 2 NA intron (NM_000489, intron 34 of 34) intron (NM_000489, intron 34 of 34) 73178 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 434-267 chr7 82354967 82355309 + 2 NA intron (NM_000722, intron 1 of 38) intron (NM_000722, intron 1 of 38) 88639 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 515-172 chr3 181516838 181517274 + 2 NA intron (NR_075091, intron 3 of 7) L1PA16|LINE|L1 -74570 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 292-152 chr15 74516028 74516283 + 2 NA Intergenic AluSx|SINE|Alu -25022 NM_001307939 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 474-15 chr1 159244845 159245194 + 2 NA Intergenic L1MA7|LINE|L1 40144 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 287-22 chr1 157749292 157749507 + 2 NA intron (NM_030764, intron 8 of 11) intron (NM_030764, intron 8 of 11) 27733 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 232-128 chr16 87444337 87444546 + 2 NA intron (NM_015144, intron 2 of 12) L1MC4|LINE|L1 47413 NM_015144 23174 Hs.156231 NM_015144 ENSG00000140948 ZCCHC14 BDG-29|BDG29 zinc finger CCHC-type containing 14 protein-coding 262-419 chr8 46884932 46885187 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 44173 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 384-373 chr8 90218429 90218723 + 2 NA Intergenic L1MB2|LINE|L1 -2912 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 329-526 chr7 12871605 12871798 + 2 NA Intergenic Intergenic 184068 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 286-105 chr13 62106087 62106238 + 2 NA Intergenic MER52A|LTR|ERV1 -76614 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 261-192 chr2 133917655 133917881 + 2 NA Intergenic Intergenic -202167 NM_001371457 154-86 chr5 19330094 19330186 + 2 NA Intergenic Intergenic 556132 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 349-327 chr3 39205040 39205264 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -12557 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 406-285 chr8 15129127 15129478 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 109129 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 331-422 chr5 68578770 68579024 + 2 NA Intergenic Intergenic 286320 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 365-311 chr5 14780217 14780434 + 2 NA intron (NM_054027, intron 1 of 11) AluSx|SINE|Alu 45687 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 452-151 chr20 4300968 4301306 + 2 NA Intergenic Intergenic -51850 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 247-8 chr1 77242128 77242352 + 2 NA Intergenic MER31-int|LTR|ERV1 -22810 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 313-403 chr4 115513699 115513884 + 2 NA Intergenic MLT2B3|LTR|ERVL -400171 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 556-78 chr17 27933407 27933776 + 2 NA intron (NR_146896, intron 2 of 4) MLT1A1|LTR|ERVL-MaLR -40226 NM_001076680 201229 Hs.687951 NM_001076680 ENSG00000232859 LYRM9 C17orf108|HSD24 LYR motif containing 9 protein-coding 306-142 chr14 39955472 39955729 + 2 NA Intergenic Intergenic -523100 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 498-268 chr8 61326744 61327200 + 2 NA intron (NM_173519, intron 2 of 5) intron (NM_173519, intron 2 of 5) 39002 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 263-369 chr6 134621364 134621533 + 2 NA Intergenic Intergenic -81443 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 298-9 chr1 81028908 81029184 + 2 NA Intergenic Intergenic -277146 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 226-73 chr12 77209382 77209590 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -143917 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 251-326 chr6 11721837 11722003 + 2 NA intron (NM_032744, intron 5 of 5) intron (NM_032744, intron 5 of 5) 57127 NM_001143948 84830 Hs.126409 NM_032744 ENSG00000111863 ADTRP AIG1L|C6orf105|dJ413H6.1 androgen dependent TFPI regulating protein protein-coding 310-550 chr9 35212037 35212272 + 2 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 50145 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 124-54 chr4 114228278 114228344 + 2 NA Intergenic Intergenic -248664 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 481-58 chr11 82189925 82190344 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 213779 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 178-24 chr10 120545295 120545441 + 2 NA intron (NM_001030059, intron 5 of 6) intron (NM_001030059, intron 5 of 6) -52581 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 627-107 chr7 13423959 13424405 + 2 NA Intergenic L1M4|LINE|L1 562332 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 618-121 chr7 127201163 127201707 + 2 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -13692 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 141-62 chr4 18445016 18445142 + 2 NA Intergenic L1MEc|LINE|L1 -423204 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 338-406 chr5 6468021 6468280 + 2 NA intron (NM_001145161, intron 1 of 1) intron (NM_001145161, intron 1 of 1) 19291 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 410-286 chr7 104472443 104472847 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 143989 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 328-423 chr4 159218660 159218933 + 2 NA intron (NM_001351724, intron 4 of 30) intron (NM_001351724, intron 4 of 30) -8836 NM_001351726 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 734-58 chr5 25827909 25828383 + 2 NA Intergenic L1M4b|LINE|L1 637193 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 394-147 chr19 5561253 5561496 + 2 NA non-coding (NR_027064, exon 3 of 3) non-coding (NR_027064, exon 3 of 3) 6660 NR_027064 257000 Hs.515575 NM_153375 ENSG00000223573 TINCR LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16 TINCR ubiquitin domain containing ncRNA 397-304 chr7 47055983 47056354 + 2 NA Intergenic L1MD2|LINE|L1 -359046 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 304-570 chrX 85720536 85720709 + 2 NA Intergenic L1MB1|LINE|L1 -115158 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 464-200 chr5 43757786 43758175 + 2 NA Intergenic L1PA11|LINE|L1 -154750 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 314-65 chr10 46196752 46197031 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 72717 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 493-53 chr11 103886856 103887190 + 2 NA Intergenic Intergenic 37117 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 366-130 chr14 82140994 82141215 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -397966 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 199-260 chr9 117630329 117630502 + 2 NA Intergenic Intergenic -18191 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 224-99 chr15 50853670 50853846 + 2 NA Intergenic Intergenic -54925 NM_001252127 23431 Hs.413366 NM_007347 ENSG00000081014 AP4E1 CPSQ4|SPG51|STUT1 adaptor related protein complex 4 subunit epsilon 1 protein-coding 313-413 chr4 181785505 181785665 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger 44388 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 392-131 chr19 36714757 36715041 + 2 NA intron (NM_152603, intron 4 of 4) intron (NM_152603, intron 4 of 4) 11218 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 286-439 chr8 14105692 14105914 + 2 NA intron (NM_139167, intron 6 of 7) intron (NM_139167, intron 6 of 7) 476113 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 735-82 chr8 109128588 109129149 + 2 NA Intergenic AluJb|SINE|Alu 42240 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 304-503 chr8 53054077 53054310 + 2 NA Intergenic L1MDa|LINE|L1 114285 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 211-300 chr8 78016084 78016221 + 2 NA Intergenic L1MB7|LINE|L1 -500188 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 631-94 chr4 126113670 126114234 + 2 NA Intergenic L1MA3|LINE|L1 606693 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 291-411 chr7 54198197 54198351 + 2 NA Intergenic L1PA16|LINE|L1 -132423 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 346-12 chr1 95755613 95755841 + 2 NA Intergenic L1M4c|LINE|L1 -236341 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 324-352 chr3 87119073 87119301 + 2 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 29907 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 552-98 chr2 33485218 33485620 + 2 NA intron (NM_001349975, intron 3 of 19) intron (NM_001349975, intron 3 of 19) 8770 NM_001349976 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 340-489 chr6 162121986 162122174 + 2 NA intron (NM_004562, intron 4 of 11) ERVL-E-int|LTR|ERVL -605052 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 413-238 chr5 38772146 38772425 + 2 NA intron (NR_109951, intron 2 of 3) (GGCAGG)n|Simple_repeat|Simple_repeat -52012 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 357-457 chr8 125833974 125834264 + 2 NA Intergenic Intergenic 117078 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 304-283 chr2 184666568 184666845 + 2 NA intron (NM_194250, intron 1 of 3) UCON21|DNA?|DNA? 68177 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 410-247 chr5 105865461 105865830 + 2 NA Intergenic L1PA14|LINE|L1 766171 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 414-251 chr4 171386866 171387174 + 2 NA Intergenic Intergenic 200836 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 968-30 chr8 116406755 116407476 + 2 NA Intergenic MIRb|SINE|MIR -82056 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 218-14 chr1 169454237 169454367 + 2 NA intron (NM_001300968, intron 2 of 6) intron (NM_001300968, intron 2 of 6) 6367 NM_001300968 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 323-478 chr6 161257300 161257592 + 2 NA intron (NM_020133, intron 1 of 8) L1ME1|LINE|L1 16615 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 232-277 chr4 115132547 115132732 + 2 NA Intergenic L1PA15-16|LINE|L1 -19019 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 564-161 chr5 141304670 141305019 + 2 NA promoter-TSS (NM_031947) promoter-TSS (NM_031947) -795 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 652-69 chr2 161481169 161481664 + 2 NA Intergenic L1MA5A|LINE|L1 26486 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 291-266 chr20 54190237 54190420 + 2 NA Intergenic Intergenic -16342 NM_000782 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 259-3 chr1 20296431 20296589 + 2 NA intron (NM_001039500, intron 1 of 21) Tigger18a|DNA|TcMar-Tigger 5635 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 1335 chr10 112863513 112864350 + 2 NA Intergenic Intergenic 40435 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 738-14 chr12 40678539 40679104 + 2 NA Intergenic Intergenic -13618 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 216-121 chr16 6008241 6008410 + 2 NA Intergenic Intergenic -10699 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 280-170 chr18 10543773 10543969 + 2 NA intron (NM_003826, intron 8 of 11) intron (NM_003826, intron 8 of 11) 17844 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 233-203 chr20 7543018 7543188 + 2 NA Intergenic L1MA3|LINE|L1 171495 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 792-58 chr7 104794340 104794992 + 2 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 9426 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 482-251 chr7 54490837 54491204 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -51305 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 155-55 chr2 114960218 114960367 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -104281 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 633 chr1 66378482 66378869 + 2 NA Intergenic L3|LINE|CR1 24140 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 350-540 chr8 129520300 129520632 + 2 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -36324 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 113-32 chr20 49552667 49552749 + 2 NA intron (NM_000961, intron 1 of 9) MER4-int|LTR|ERV1 15429 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 372-354 chr4 37713880 37714141 + 2 NA Intergenic L2b|LINE|L2 -27634 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 260-384 chr6 118842468 118842612 + 2 NA intron (NM_017696, intron 7 of 11) intron (NM_017696, intron 7 of 11) -51612 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 209-251 chr5 41084823 41084977 + 2 NA Intergenic Intergenic -13558 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 325-171 chr14 68351175 68351369 + 2 NA intron (NM_133509, intron 8 of 10) L2c|LINE|L2 277515 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 193-99 chr2 49847401 49847540 + 2 NA Intergenic Intergenic 126733 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 500-35 chr10 98963189 98963591 + 2 NA intron (NM_021828, intron 3 of 11) MER113|DNA|hAT-Charlie -38822 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 249-331 chr5 53265948 53266128 + 2 NA Intergenic Intergenic 156196 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 274-131 chr14 72035542 72035772 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 102130 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 495-83 chr17 34714152 34714500 + 2 NA Intergenic Intergenic 133577 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 547-72 chr15 36117841 36118369 + 2 NA Intergenic L2|LINE|L2 191249 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 273-144 chr15 33416539 33416744 + 2 NA intron (NM_001243996, intron 1 of 102) L1PA17|LINE|L1 105674 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 657-47 chr2 36200013 36200371 + 2 NA Intergenic L2a|LINE|L2 155378 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 319-222 chr19 52315736 52316031 + 2 NA exon (NM_001297625, exon 3 of 4) exon (NM_001297625, exon 3 of 4) 18714 NM_144684 147657 Hs.729317 NM_144684 ENSG00000198464 ZNF480 - zinc finger protein 480 protein-coding 364-245 chr20 40134901 40135176 + 2 NA Intergenic Intergenic 130577 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 261-321 chr5 144734895 144735045 + 2 NA Intergenic L1PA16|LINE|L1 529579 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 710-56 chr22 46179023 46179459 + 2 NA intron (NM_001362872, intron 3 of 8) MLT1A|LTR|ERVL-MaLR 28446 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 198-210 chr6 23871652 23871815 + 2 NA Intergenic Intergenic -254482 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 249-429 chr8 118486721 118486903 + 2 NA intron (NM_001101676, intron 2 of 4) LTR33|LTR|ERVL -134189 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 310-183 chr17 27680423 27680626 + 2 NA Intergenic L2a|LINE|L2 49336 NM_009587 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 450-26 chr10 10156751 10157189 + 2 NA Intergenic Intergenic 98248 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 309-88 chr11 90552457 90552651 + 2 NA intron (NR_104190, intron 2 of 6) Charlie17a|DNA|hAT-Charlie 3303 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 239-395 chr8 40178812 40178982 + 2 NA Intergenic MIR3|SINE|MIR 25415 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 418-255 chr7 20955789 20956044 + 2 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 120485 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 398-270 chr5 58515008 58515251 + 2 NA Intergenic L1PA11|LINE|L1 14980 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 755-64 chr7 46087199 46087794 + 2 NA Intergenic L1PA6|LINE|L1 -166224 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 601-64 chr18 61298495 61298874 + 2 NA Intergenic Intergenic -34746 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 396-90 chr12 59699133 59699414 + 2 NA intron (NR_073055, intron 1 of 6) intron (NR_073055, intron 1 of 6) 9903 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 454-158 chr2 81724252 81724582 + 2 NA Intergenic MIRc|SINE|MIR -257471 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 255-333 chr5 90958339 90958510 + 2 NA intron (NR_003149, intron 83 of 89) L1ME1|LINE|L1 355978 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 249-358 chr6 121553058 121553214 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 117490 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 222-236 chr3 77534069 77534234 + 2 NA intron (NM_001290039, intron 7 of 26) intron (NM_001290039, intron 7 of 26) 436139 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 200-37 chr10 109349129 109349289 + 2 NA Intergenic L1ME1|LINE|L1 574037 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 348-540 chr8 135895140 135895343 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 437785 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 219-112 chr15 54973372 54973521 + 2 NA Intergenic L1MC5|LINE|L1 -83301 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 602-97 chr4 133342993 133343516 + 2 NA Intergenic L1MB1|LINE|L1 193960 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 199-202 chr5 102668997 102669170 + 2 NA intron (NR_103753, intron 1 of 2) intron (NR_103753, intron 1 of 2) 2381 NR_103754 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 589-167 chr9 98524370 98524762 + 2 NA intron (NM_005458, intron 3 of 18) L2|LINE|L2 184369 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 247-443 chrX 69541601 69541785 + 2 NA Intergenic L1ME4b|LINE|L1 36458 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 407-248 chr5 58253822 58254108 + 2 NA Intergenic MIR|SINE|MIR -131624 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 185-214 chr9 134612104 134612283 + 2 NA Intergenic L1ME3|LINE|L1 -29612 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 210-62 chr12 114262219 114262399 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -20539 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 644-69 chr4 37040989 37041402 + 2 NA Intergenic Intergenic 39416 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 188-208 chr8 116468342 116468487 + 2 NA Intergenic Intergenic -143355 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 218-320 chr8 63595598 63595783 + 2 NA Intergenic Plat_L3|LINE|CR1 129841 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 325-385 chr4 37984274 37984442 + 2 NA intron (NM_001253912, intron 2 of 20) L1MC1|LINE|L1 23960 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 228-237 chr4 38585732 38585940 + 2 NA Intergenic L2a|LINE|L2 21833 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 302-83 chr11 91887150 91887392 + 2 NA Intergenic L1M5|LINE|L1 -337763 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 168-126 chr9 103124551 103124688 + 2 NA Intergenic Intergenic 129286 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 449-135 chr2 204539062 204539404 + 2 NA Intergenic Intergenic -6242 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 476-98 chr15 93790554 93790966 + 2 NA Intergenic Intergenic -65800 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 324-437 chr5 141428462 141428730 + 2 NA TTS (NR_001297) TTS (NR_001297) -1911 NM_003735 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 203-96 chr18 61911348 61911514 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -18424 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 265-186 chr2 81840581 81840776 + 2 NA Intergenic Intergenic -373732 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 358-470 chr8 64947585 64947888 + 2 NA Intergenic L1M3d|LINE|L1 -148999 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 350-541 chr8 129670040 129670234 + 2 NA intron (NR_130917, intron 1 of 3) THE1B-int|LTR|ERVL-MaLR 10102 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 180-38 chr12 79752655 79752820 + 2 NA Intergenic Charlie6|DNA|hAT-Charlie -61640 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 445-130 chr2 115582644 115583030 + 2 NA intron (NM_001321912, intron 6 of 25) MIRc|SINE|MIR 239022 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 432-198 chr4 58955707 58955957 + 2 NA Intergenic L1MEc|LINE|L1 -28450 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 296-290 chr3 36304329 36304560 + 2 NA Intergenic Intergenic -76043 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 501-72 chr15 25154874 25155363 + 2 NA intron (NR_146177, intron 61 of 147) L1MC3|LINE|L1 -15605 NR_001291 338433 NR_001291 ENSG00000201831 SNORD115-1 HBII-52-1|RNHBII52 small nucleolar RNA, C/D box 115-1 snoRNA 605-41 chr17 72160910 72161397 + 2 NA Intergenic Intergenic 40133 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 373-140 chr16 9333866 9334235 + 2 NA Intergenic Intergenic -21538 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 277-223 chr20 9292545 9292707 + 2 NA intron (NM_182797, intron 1 of 35) intron (NM_182797, intron 1 of 35) -15174 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 466-31 chr10 81660762 81661152 + 2 NA Intergenic L2a|LINE|L2 -214237 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 261-266 chr4 2342629 2342824 + 2 NA intron (NM_001172658, intron 1 of 4) intron (NM_001172658, intron 1 of 4) 22088 NM_001172660 57732 Hs.292056 NM_020972 ENSG00000159733 ZFYVE28 LST2|LYST2 zinc finger FYVE-type containing 28 protein-coding 215-122 chr18 7645375 7645523 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 78133 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 296-16 chr1 164711530 164711758 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 62997 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 236-190 chr2 187949515 187949696 + 2 NA Intergenic Intergenic 338086 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 379-31 chr1 231044564 231044798 + 2 NA Intergenic MER57E1|LTR|ERV1 -4427 NM_198552 375061 Hs.38516 NM_198552 ENSG00000182118 FAM89A C1orf153 family with sequence similarity 89 member A protein-coding 222-294 chr5 66315184 66315400 + 2 NA Intergenic L1PA16|LINE|L1 -105846 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 337-29 chr1 191679787 191680076 + 2 NA Intergenic L1MA3|LINE|L1 -451433 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 282-93 chr12 26264244 26264410 + 2 NA Intergenic Intergenic 68754 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 499-79 chr16 65077683 65078020 + 2 NA intron (NM_001330576, intron 1 of 11) intron (NM_001330576, intron 1 of 11) 44212 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 293-252 chr3 12414241 12414490 + 2 NA intron (NM_001330615, intron 5 of 5) FLAM_C|SINE|Alu 62863 NM_015869 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 365-270 chr3 162779777 162779982 + 2 NA Intergenic Intergenic 523422 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 444-91 chr16 82398394 82398706 + 2 NA Intergenic Intergenic -228326 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 388-248 chr4 38035630 38035957 + 2 NA intron (NM_001253912, intron 8 of 20) intron (NM_001253912, intron 8 of 20) -74388 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 483-255 chr8 46399955 46400280 + 2 NA Intergenic ALR/Alpha|Satellite|centr 217526 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 571-91 chr20 10844240 10844558 + 2 NA Intergenic (ATAC)n|Simple_repeat|Simple_repeat 64873 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 789-52 chr8 141906353 141907002 + 2 NA Intergenic Intergenic -120364 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 197-180 chr6 18541950 18542122 + 2 NA intron (NR_149116, intron 3 of 7) intron (NR_149116, intron 3 of 7) 19289 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 432-45 chr11 25372886 25373170 + 2 NA Intergenic Intergenic -816095 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 448-180 chr4 53986988 53987340 + 2 NA non-coding (NR_027153, exon 1 of 1) non-coding (NR_027153, exon 1 of 1) 118 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 383-156 chr17 54844481 54844802 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -56050 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 643-134 chr8 141311061 141311511 + 2 NA Intergenic Intergenic -29263 NR_024441 731779 Hs.586414 NR_024441 ENSG00000253595 LINC01300 - long intergenic non-protein coding RNA 1300 ncRNA 431-130 chr2 54058801 54059188 + 2 NA intron (NM_001320587, intron 3 of 5) LTR19A|LTR|ERV1 -56621 NM_001320589 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 172-60 chr2 82826551 82826716 + 2 NA Intergenic Intergenic -30170 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 349-353 chr3 186378077 186378368 + 2 NA Intergenic Intergenic -15988 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 293-266 chr3 87701360 87701534 + 2 NA Intergenic Intergenic -91259 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 627-78 chr4 35883231 35883674 + 2 NA Intergenic Intergenic 360487 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 881 chr10 22054976 22055726 + 2 NA Intergenic Intergenic -51621 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 384-330 chr6 150287586 150287912 + 2 NA Intergenic L2c|LINE|L2 -81263 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 410-293 chr8 2826944 2827294 + 2 NA Intergenic Intergenic -98668 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 448-13 chr1 117233545 117233980 + 2 NA Intergenic LTR16A|LTR|ERVL -22802 NM_001253850 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 584-8 chr1 73974256 73974635 + 2 NA Intergenic L1MD|LINE|L1 223731 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 280-318 chr5 30695874 30696053 + 2 NA Intergenic L2b|LINE|L2 -497723 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 230-369 chr8 63847610 63847810 + 2 NA Intergenic Intergenic 78280 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 238-8 chr1 56594270 56594502 + 2 NA Intergenic L2-1_AMi|LINE|L2 -14823 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 115-3 chr1 81975450 81975538 + 2 NA intron (NM_001366002, intron 16 of 20) intron (NM_001366002, intron 16 of 20) 173041 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 201-211 chr5 155592073 155592265 + 2 NA Intergenic MIR|SINE|MIR 578414 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 406-315 chr9 103895550 103895840 + 2 NA Intergenic L1MC3|LINE|L1 -104014 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 464-83 chr16 9267615 9267939 + 2 NA Intergenic Intergenic -87811 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 279-147 chr18 30566211 30566396 + 2 NA Intergenic Intergenic 267393 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 307-270 chr20 7469526 7469781 + 2 NA Intergenic L1MA2|LINE|L1 98045 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 313-247 chr2 46052100 46052320 + 2 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -245197 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 226-390 chr9 131742882 131743092 + 2 NA Intergenic Intergenic -3043 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 272-68 chr11 15811595 15811826 + 2 NA Intergenic L1ME3G|LINE|L1 157911 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 214-135 chr18 371056 371204 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -103083 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 249-95 chr12 99195817 99195975 + 2 NA intron (NM_152788, intron 14 of 25) intron (NM_152788, intron 14 of 25) -40806 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 325-153 chr13 98589306 98589607 + 2 NA Intergenic AluSx|SINE|Alu 12201 NR_046542 100874069 Hs.594160 NR_046542 STK24-AS1 - STK24 antisense RNA 1 ncRNA 757-55 chr7 37775480 37776151 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -72782 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 262-372 chr6 61590321 61590486 + 2 NA intron (NR_146870, intron 14 of 15) intron (NR_146870, intron 14 of 15) 16273 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 379-206 chr22 27363504 27363822 + 2 NA Intergenic L1MC1|LINE|L1 53012 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 419-279 chr7 96498442 96498756 + 2 NA intron (NR_163953, intron 3 of 5) intron (NR_163953, intron 3 of 5) 4924 NR_163949 470-64 chr13 82875973 82876267 + 2 NA Intergenic Intergenic 1006273 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 531-183 chr4 113807522 113807921 + 2 NA Intergenic Intergenic -45794 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 496-263 chr7 57151241 57151689 + 2 NA Intergenic AluSp|SINE|Alu -11601 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 320-163 chr14 96543382 96543553 + 2 NA intron (NM_001363662, intron 14 of 20) intron (NM_001363662, intron 14 of 20) 40602 NM_001293628 10914 Hs.253726 NM_032632 ENSG00000090060 PAPOLA PAP|PAP-alpha poly(A) polymerase alpha protein-coding 271-148 chr15 60073133 60073360 + 2 NA Intergenic Intergenic 68935 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 729-3 chr1 89239495 89240111 + 2 NA Intergenic L1PA14|LINE|L1 33057 NM_001134486 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 706-3 chr1 247246532 247247041 + 2 NA Intergenic AluJb|SINE|Alu -9286 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 433-307 chr9 108690188 108690570 + 2 NA Intergenic L1ME4a|LINE|L1 165607 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 367-432 chr7 158506199 158506425 + 2 NA intron (NM_130843, intron 1 of 21) intron (NM_130843, intron 1 of 21) 26501 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 492-167 chr3 4229244 4229693 + 2 NA Intergenic MIRb|SINE|MIR -73836 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 361-429 chr8 15711022 15711331 + 2 NA intron (NM_001356429, intron 6 of 10) intron (NM_001356429, intron 6 of 10) 170913 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 203-56 chr13 92365523 92365678 + 2 NA intron (NM_004466, intron 7 of 7) Tigger3b|DNA|TcMar-Tigger -13393 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 493-173 chr2 227665353 227665835 + 2 NA Intergenic Intergenic -32274 NM_001162483 56918 Hs.283092 NM_020161 ENSG00000042304 C2orf83 - chromosome 2 open reading frame 83 protein-coding 282-131 chr14 68739729 68739975 + 2 NA Intergenic Intergenic 54062 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 310-567 chrX 21059845 21060075 + 2 NA Intergenic L1MA9|LINE|L1 -314458 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 263-309 chr5 4444895 4445116 + 2 NA Intergenic L1MEb|LINE|L1 -328476 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 389-194 chr2 217563313 217563605 + 2 NA intron (NR_026597, intron 2 of 12) intron (NR_026597, intron 2 of 12) 193134 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 270-298 chr5 57722048 57722265 + 2 NA Intergenic Intergenic 71496 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 316-240 chr19 56632820 56633015 + 2 NA intron (NR_163262, intron 3 of 5) intron (NR_163262, intron 3 of 5) -10242 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 244-190 chr2 234797944 234798181 + 2 NA Intergenic Intergenic 115394 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 300-361 chr5 57831147 57831320 + 2 NA Intergenic L2b|LINE|L2 67929 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 281-455 chr9 32463653 32463836 + 2 NA intron (NM_014314, intron 16 of 17) intron (NM_014314, intron 16 of 17) 62452 NM_014314 23586 Hs.190622 NM_014314 ENSG00000107201 DDX58 RIG-I|RIG1|RIGI|RLR-1|SGMRT2 DExD/H-box helicase 58 protein-coding 362-47 chr10 18328590 18328861 + 2 NA intron (NM_000724, intron 1 of 12) intron (NM_000724, intron 1 of 12) -11984 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 147-90 chr9 94193368 94193451 + 2 NA intron (NR_160773, intron 2 of 2) L1PB3|LINE|L1 11157 NR_046165 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 176-5 chr1 113554161 113554270 + 2 NA intron (NM_001142782, intron 2 of 20) L1MEc|LINE|L1 163700 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 243-41 chr10 57193166 57193387 + 2 NA Intergenic Intergenic 111283 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 314-375 chr3 68527025 68527236 + 2 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) 26493 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 287-389 chr7 125218785 125218972 + 2 NA intron (NR_110188, intron 3 of 8) L1M1|LINE|L1 34309 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 371-201 chr2 190112736 190113074 + 2 NA Intergenic L1M5|LINE|L1 -24872 NM_001042521 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 343-27 chr1 159420646 159420855 + 2 NA intron (NM_001363558, intron 3 of 3) L1MA4A|LINE|L1 -11442 NR_145510 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 471-28 chr10 58020627 58020971 + 2 NA Intergenic L1PB2|LINE|L1 247095 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 217-82 chr11 114302031 114302194 + 2 NA intron (NM_006169, intron 2 of 2) L1MEf|LINE|L1 6299 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 341-3 chr1 20495243 20495496 + 2 NA Intergenic MIR|SINE|MIR -9159 NM_018584 55450 Hs.731383 NM_018584 ENSG00000162545 CAMK2N1 PRO1489 calcium/calmodulin dependent protein kinase II inhibitor 1 protein-coding 335-159 chr14 54285951 54286120 + 2 NA Intergenic Intergenic -110833 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 349-489 chr8 10984842 10985072 + 2 NA intron (NM_173683, intron 1 of 2) AluSx|SINE|Alu 50345 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 303-473 chr8 131004669 131004837 + 2 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 36156 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 508-127 chr20 12519521 12519948 + 2 NA Intergenic Intergenic 417229 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 240-54 chr10 62020182 62020340 + 2 NA intron (NM_032199, intron 4 of 9) intron (NM_032199, intron 4 of 9) -29096 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 413-267 chr6 62612168 62612379 + 2 NA Intergenic MER50-int|LTR|ERV1 -326046 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 166-88 chr4 184753645 184753775 + 2 NA Intergenic L1MB3|LINE|L1 -19614 NM_024629 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 608-27 chr12 11749727 11750239 + 2 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 100129 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 363-8 chr1 78075731 78076012 + 2 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 29905 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 291-112 chr13 64758275 64758503 + 2 NA Intergenic MER41B|LTR|ERV1 -682378 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 472-158 chr2 105419225 105419564 + 2 NA intron (NM_201557, intron 1 of 5) L1PB1|LINE|L1 19119 NM_001318897 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 153-68 chr3 89740166 89740254 + 2 NA Intergenic Intergenic 632589 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 240-416 chr8 112015526 112015707 + 2 NA Intergenic L1ME1|LINE|L1 -627877 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 361-43 chr10 52768111 52768315 + 2 NA exon (NM_000242, exon 4 of 4) exon (NM_000242, exon 4 of 4) 3487 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 188-66 chr15 98204635 98204795 + 2 NA Intergenic Intergenic -115962 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 640-116 chr6 69647696 69648317 + 2 NA Intergenic L1MEd|LINE|L1 148460 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 316 chr1 5586379 5586631 + 2 NA Intergenic Intergenic 276236 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 344-52 chr10 49050578 49050896 + 2 NA intron (NM_001031746, intron 5 of 7) intron (NM_001031746, intron 5 of 7) 64785 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 323-377 chr4 99894954 99895211 + 2 NA promoter-TSS (NM_001243736) promoter-TSS (NM_001243736) -536 NM_001243736 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 183-56 chr16 9444956 9445096 + 2 NA promoter-TSS (NR_126397) promoter-TSS (NR_126397) -41 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 260-413 chr7 96544109 96544282 + 2 NA intron (NR_163953, intron 2 of 5) L3b|LINE|CR1 -40672 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 330-385 chr4 99218215 99218455 + 2 NA intron (NR_132990, intron 1 of 6) intron (NR_132990, intron 1 of 6) 911 NM_000672 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 121-6 chr12 51135456 51135533 + 2 NA intron (NM_005653, intron 1 of 14) intron (NM_005653, intron 1 of 14) 37641 NM_001173453 7024 Hs.48849 NM_005653 ENSG00000135457 TFCP2 LBP1C|LSF|LSF1D|SEF|TFCP2C transcription factor CP2 protein-coding 277-354 chr6 88779396 88779585 + 2 NA intron (NM_001286428, intron 10 of 13) intron (NM_001286428, intron 10 of 13) 184128 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 485-38 chr10 117014862 117015265 + 2 NA intron (NM_001258300, intron 2 of 17) Tigger9a|DNA|TcMar-Tigger -9486 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 396-82 chr12 10792418 10792793 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 10022 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 240-94 chr11 133602728 133602908 + 2 NA Intergenic L1ME1|LINE|L1 -70317 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 651-11 chr1 241371522 241371907 + 2 NA Intergenic MIR3|SINE|MIR -14484 NM_002924 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 309-469 chr6 22987320 22987558 + 2 NA Intergenic L1MDa|LINE|L1 -269515 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 294-486 chr9 3444068 3444317 + 2 NA intron (NM_001282116, intron 1 of 16) L1ME1|LINE|L1 45295 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 497-168 chr3 10386225 10386535 + 2 NA intron (NM_001001331, intron 7 of 22) intron (NM_001001331, intron 7 of 22) 8182 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 540-193 chr7 30061516 30061912 + 2 NA intron (NM_001363473, intron 10 of 12) intron (NM_001363473, intron 10 of 12) 16629 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 249-148 chr17 3109120 3109355 + 2 NA Intergenic L1ME3A|LINE|L1 -7356 NM_001348201 8389 NM_001348201 OR1E3 OR17-210|OR1E3P olfactory receptor family 1 subfamily E member 3 (gene/pseudogene) protein-coding 371-208 chr2 232911261 232911609 + 2 NA intron (NM_001114090, intron 3 of 12) L1MD|LINE|L1 16716 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 545-99 chr18 76304958 76305264 + 2 NA Intergenic L1MD3|LINE|L1 95601 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 303-480 chr8 138230573 138230814 + 2 NA intron (NM_015912, intron 7 of 19) MLT1J1-int|LTR|ERVL-MaLR -147148 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 253-25 chr1 185448551 185448711 + 2 NA Intergenic Intergenic -113592 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 213-12 chr1 94263881 94264040 + 2 NA Intergenic L1ME4a|LINE|L1 -16214 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 278-2 chr1 43477923 43478127 + 2 NA Intergenic L1MEd|LINE|L1 -24036 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 503-267 chr7 78760981 78761453 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -247771 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 238-344 chr7 2950728 2950853 + 2 NA intron (NM_001324281, intron 3 of 25) L1MB8|LINE|L1 93077 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 468-268 chr5 146649884 146650195 + 2 NA intron (NM_181678, intron 7 of 10) L1ME3A|LINE|L1 -133926 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 216-258 chr4 104822860 104823022 + 2 NA Intergenic Intergenic -322934 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 246-231 chr20 42170172 42170327 + 2 NA intron (NM_133170, intron 17 of 31) MLT1L|LTR|ERVL-MaLR -515234 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 266-203 chr2 180567083 180567254 + 2 NA Intergenic Intergenic -124936 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 183-52 chr15 61604078 61604231 + 2 NA Intergenic L2a|LINE|L2 -125764 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 278-283 chr3 98188878 98189102 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 20290 NM_001005515 403274 Hs.554713 NM_001005515 ENSG00000233412 OR5H15 - olfactory receptor family 5 subfamily H member 15 protein-coding 565-61 chr17 68611035 68611427 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -9864 NM_001243746 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 319-201 chr18 34189926 34190191 + 2 NA intron (NM_001353232, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat 32412 NM_001282527 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 297-125 chr13 112683136 112683296 + 2 NA intron (NM_207440, intron 2 of 2) intron (NM_207440, intron 2 of 2) -7113 NM_032189 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 301-167 chr17 66310116 66310313 + 2 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) 7601 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 369-350 chr6 37889779 37890089 + 2 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 70207 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 173-26 chr12 97123899 97124004 + 2 NA Intergenic Intergenic 216485 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 252-6 chr1 56925603 56925852 + 2 NA Intergenic Intergenic 40288 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 212-7 chr1 96564838 96565012 + 2 NA Intergenic Intergenic -156680 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 145-84 chr8 50978325 50978431 + 2 NA Intergenic L1MA4|LINE|L1 814247 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 457-251 chr8 52991294 52991672 + 2 NA Intergenic L2a|LINE|L2 51575 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 337-231 chr19 36523155 36523444 + 2 NA intron (NM_001012756, intron 2 of 3) L2|LINE|L2 4972 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 417-223 chr5 90194478 90194869 + 2 NA intron (NR_120601, intron 4 of 5) L1M1|LINE|L1 95398 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 216-182 chr2 150289588 150289736 + 2 NA Intergenic L1M5|LINE|L1 -32655 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 256-429 chr8 114604378 114604518 + 2 NA Intergenic L1MEg|LINE|L1 1063565 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 280-60 chr10 111396403 111396549 + 2 NA Intergenic L1ME3|LINE|L1 282185 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 404-43 chr10 65093579 65093923 + 2 NA Intergenic LTR16E2|LTR|ERVL -169233 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 320-219 chr18 12251317 12251484 + 2 NA Intergenic Intergenic -2961 NM_001318383 1149 Hs.249129 NM_001279 ENSG00000176194 CIDEA CIDE-A cell death inducing DFFA like effector a protein-coding 322-105 chr11 123759065 123759327 + 2 NA Intergenic Intergenic -4678 NM_001005188 390260 Hs.553759 NM_001005188 ENSG00000221931 OR6X1 OR11-270 olfactory receptor family 6 subfamily X member 1 protein-coding 607-3 chr1 53251638 53252077 + 2 NA intron (NM_004631, intron 16 of 18) AluJb|SINE|Alu 13247 NR_038953 100507564 Hs.592502 NR_038953 ENSG00000226754 LOC100507564 - uncharacterized LOC100507564 ncRNA 366-301 chr4 38365464 38365754 + 2 NA Intergenic Intergenic -1305 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 192-21 chr10 55329745 55329874 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -269233 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 330-61 chr10 59430168 59430448 + 2 NA Intergenic (TATATT)n|Simple_repeat|Simple_repeat -67127 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 295-292 chr3 50984496 50984716 + 2 NA intron (NM_004947, intron 5 of 52) L1M2|LINE|L1 309526 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 408-244 chr4 98693445 98693819 + 2 NA Intergenic AluSx3|SINE|Alu 34730 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 331-2 chr1 14876723 14876926 + 2 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -47305 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 192-42 chr11 103814285 103814447 + 2 NA Intergenic Intergenic -35540 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 457-56 chr12_GL877875v1_alt 48813 49143 + 2 NA Intergenic L1ME1|LINE|L1 -11804 NM_001170738 440073 Hs.536319 NM_015232 ENSG00000120645 IQSEC3 - IQ motif and Sec7 domain 3 protein-coding 237-6 chr1 56541230 56541435 + 2 NA intron (NM_003713, intron 1 of 5) intron (NM_003713, intron 1 of 5) 38231 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 355-123 chr12 18546438 18546723 + 2 NA intron (NM_001288774, intron 26 of 32) intron (NM_001288774, intron 26 of 32) 190929 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 276-333 chr4 59076018 59076234 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 62553 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 461-194 chr4 71679081 71679356 + 2 NA Intergenic Intergenic 104861 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 328-176 chr15 62655232 62655460 + 2 NA intron (NM_015059, intron 4 of 55) intron (NM_015059, intron 4 of 55) 8035 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 465-201 chr4 62674521 62674892 + 2 NA Intergenic L1ME4c|LINE|L1 -512941 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 189-109 chr20 11791752 11791894 + 2 NA Intergenic LTR35|LTR|ERV1 78892 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 291-502 chrX 42365114 42365307 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 412953 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 243-20 chr1 176284402 176284574 + 2 NA Intergenic L1PA15|LINE|L1 -77202 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 257-386 chr7 47203262 47203457 + 2 NA Intergenic Intergenic 261444 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 290-74 chr11 54830133 54830395 + 2 NA Intergenic ALR/Alpha|Satellite|centr 123432 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 473-80 chr14 39794417 39794770 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -362093 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 191-186 chr6 62343554 62343677 + 2 NA Intergenic L1P4a|LINE|L1 -57388 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 187-149 chr6 54741570 54741742 + 2 NA Intergenic L1MD1|LINE|L1 -105115 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 272-105 chr13 79662307 79662464 + 2 NA Intergenic AluJo|SINE|Alu 95658 NR_125772 103724388 Hs.434862 NR_125772 ENSG00000227676 LINC01068 - long intergenic non-protein coding RNA 1068 ncRNA 530-85 chr15 83081051 83081408 + 2 NA Intergenic L1ME3A|LINE|L1 13894 NR_039740 100616404 NR_039740 ENSG00000263643 MIR4515 mir-4515 microRNA 4515 ncRNA 211-180 chr3 21032705 21032862 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -372943 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 325-71 chr10 77354675 77354848 + 2 NA intron (NR_126365, intron 2 of 5) intron (NR_126365, intron 2 of 5) 3889 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 224-358 chrX 45126642 45126845 + 2 NA Intergenic Intergenic 74133 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 278-401 chr7 69415539 69415715 + 2 NA Intergenic Intergenic 181997 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 287-203 chr2 119832857 119833048 + 2 NA intron (NM_002830, intron 2 of 26) L1M5|LINE|L1 73030 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 490-44 chr10 90517272 90517658 + 2 NA intron (NR_110657, intron 2 of 6) L1PA13|LINE|L1 23340 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 143-16 chr12 6790045 6790151 + 2 NA intron (NM_001195016, intron 1 of 7) intron (NM_001195016, intron 1 of 7) 570 NM_001195015 920 Hs.631659 NM_000616 ENSG00000010610 CD4 CD4mut CD4 molecule protein-coding 347-527 chr8 128261137 128261419 + 2 NA Intergenic Intergenic 111162 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 231-38 chr10 67395712 67395834 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 7637 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 203-259 chrX 108187840 108187992 + 2 NA exon (NM_001847, exon 22 of 45) exon (NM_001847, exon 22 of 45) 96138 NM_052936 115201 Hs.8763 NM_052936 ENSG00000101844 ATG4A APG4A|AUTL2 autophagy related 4A cysteine peptidase protein-coding 345-59 chr10 47265401 47265598 + 2 NA Intergenic Intergenic -34698 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 314-513 chr6 153159120 153159296 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -27926 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 242-67 chr12 15962301 15962471 + 2 NA intron (NM_015954, intron 4 of 8) intron (NM_015954, intron 4 of 8) 51054 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 463-307 chr9 78793822 78794165 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 351673 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 224-124 chr18 40804565 40804749 + 2 NA Intergenic MIR|SINE|MIR 716020 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 203-85 chr16 90016991 90017144 + 2 NA intron (NM_001288708, intron 1 of 4) intron (NM_001288708, intron 1 of 4) 2389 NM_001042610 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding 315-417 chr6 54409626 54409931 + 2 NA Intergenic L1PA3|LINE|L1 101337 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 242-380 chr7 115133180 115133335 + 2 NA intron (NR_126407, intron 2 of 4) HERVL40-int|LTR|ERVL 54299 NR_120521 102724386 Hs.352357 NR_120521 ENSG00000225535 LINC01393 - long intergenic non-protein coding RNA 1393 ncRNA 414-203 chr3 16008148 16008409 + 2 NA Intergenic LTR40a|LTR|ERVL 134507 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 356-437 chr6 144664026 144664275 + 2 NA intron (NM_007124, intron 50 of 73) L2c|LINE|L2 258495 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 197-184 chr6 94565397 94565579 + 2 NA Intergenic L2a|LINE|L2 847185 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 340-498 chr7 9184311 9184613 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -449808 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 344-91 chr11 113577129 113577323 + 2 NA Intergenic LTR79|LTR|ERVL -101828 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 480-175 chr20 56725608 56725915 + 2 NA Intergenic Intergenic 96455 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 701-44 chr2 124772069 124772625 + 2 NA intron (NM_130773, intron 16 of 23) intron (NM_130773, intron 16 of 23) 747060 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 275-173 chr2 2009301 2009499 + 2 NA intron (NM_015025, intron 4 of 24) L1MA9|LINE|L1 -264885 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 474-311 chrUn_GL000216v2 1766 2083 + 2 NA NA (CATTC)n|Satellite|Satellite NA NA 319-64 chr10 66924004 66924187 + 2 NA intron (NR_111911, intron 3 of 6) intron (NR_111911, intron 3 of 6) -1941 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 325-199 chr16 61168791 61168976 + 2 NA Intergenic L1MA3|LINE|L1 -113117 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 505-310 chr8 118295095 118295594 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -183525 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 357-437 chr8 77841062 77841359 + 2 NA Intergenic Intergenic 390513 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 403-93 chr14 48855601 48855837 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 730661 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 349-330 chr3 80197945 80198275 + 2 NA Intergenic Intergenic -430112 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 386-41 chr10 98199589 98199913 + 2 NA intron (NM_001256620, intron 3 of 8) Tigger18a|DNA|TcMar-Tigger 65094 NM_001351012 27291 Hs.419800 NM_014472 ENSG00000166024 R3HCC1L C10orf28|GIDRP86|GIDRP88|PSORT R3H domain and coiled-coil containing 1 like protein-coding 315-41 chr10 4320816 4321079 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -63299 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 273-81 chr11 73251171 73251337 + 2 NA Intergenic L1MEc|LINE|L1 -13251 NM_176796 5031 Hs.16362 NM_004154 ENSG00000171631 P2RY6 P2Y6 pyrimidinergic receptor P2Y6 protein-coding 172-135 chr8 100134408 100134555 + 2 NA intron (NR_036491, intron 3 of 4) intron (NR_036491, intron 3 of 4) 11336 NM_001029860 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 176-121 chr6 55970635 55970772 + 2 NA Intergenic Intergenic -95113 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 481-166 chr20 1412208 1412539 + 2 NA Intergenic L1MD2|LINE|L1 -19201 NM_001199786 2280 Hs.471933 NM_000801 ENSG00000088832 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FKBP prolyl isomerase 1A protein-coding 369-163 chr18 34750147 34750374 + 2 NA intron (NM_032978, intron 1 of 16) intron (NM_032978, intron 1 of 16) -5716 NM_001391 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 132-14 chr11 32351407 32351534 + 2 NA Intergenic Intergenic 48930 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 257-292 chr4 33701628 33701827 + 2 NA Intergenic L1MB1|LINE|L1 338166 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 353-236 chr2 16453972 16454167 + 2 NA Intergenic Intergenic 211765 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 342-158 chr15 48190738 48191062 + 2 NA promoter-TSS (NM_001145668) promoter-TSS (NM_001145668) -765 NM_001145668 399697 Hs.721408 NM_001145668 ENSG00000233932 CTXN2 - cortexin 2 protein-coding 273-445 chr8 70788483 70788691 + 2 NA Intergenic Intergenic 119248 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 236-181 chr2 126359981 126360151 + 2 NA Intergenic MIR|SINE|MIR -242081 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 340-346 chr22 49331608 49331872 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 211726 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 203-135 chr21 28176971 28177114 + 2 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 51625 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 271-56 chr10 93532711 93532912 + 2 NA Intergenic MER33|DNA|hAT-Charlie -33854 NM_181745 338557 Hs.661022 NM_181745 ENSG00000186188 FFAR4 BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 free fatty acid receptor 4 protein-coding 255-261 chr3 79597509 79597734 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 89734 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 252-414 chr8 49743510 49743701 + 2 NA Intergenic Intergenic -166191 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 200-228 chr5 126649611 126649781 + 2 NA Intergenic Intergenic 17991 NM_207408 389320 Hs.177983 NM_207408 ENSG00000196900 TEX43 C5orf48|Tseg7 testis expressed 43 protein-coding 243-488 chrX 118318055 118318270 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -27911 NM_001184966 54521 Hs.98510 NM_019045 ENSG00000131725 WDR44 RAB11BP|RPH11|SYM-4 WD repeat domain 44 protein-coding 209-106 chr15 56158258 56158438 + 2 NA intron (NM_001368073, intron 2 of 8) MIRc|SINE|MIR 31584 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 294-6 chr1 63343181 63343458 + 2 NA Intergenic MIR|SINE|MIR -16335 NR_106716 102464823 NR_106716 ENSG00000275836 MIR6068 hsa-mir-6068 microRNA 6068 ncRNA 186-56 chr15 94140563 94140726 + 2 NA Intergenic L1ME1|LINE|L1 -32706 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 232-225 chr22 16989494 16989636 + 2 NA intron (NM_001037814, intron 2 of 9) intron (NM_001037814, intron 2 of 9) 18657 NM_001037814 128954 Hs.434113 NM_001037814 ENSG00000215568 GAB4 - GRB2 associated binding protein family member 4 protein-coding 338-452 chr5 143846443 143846767 + 2 NA Intergenic Intergenic 34444 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 619-34 chr12 34588586 34588960 + 2 NA Intergenic ALR/Alpha|Satellite|centr 566277 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 468-41 chr10 132326088 132326499 + 2 NA intron (NM_001318881, intron 1 of 1) MER4D1|LTR|ERV1 5587 NM_001318881 282974 Hs.469002 NM_173575 ENSG00000165752 STK32C PKE|YANK3 serine/threonine kinase 32C protein-coding 226-165 chr2 83407022 83407206 + 2 NA Intergenic L1MEf|LINE|L1 -115700 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 203-122 chr2 126564491 126564655 + 2 NA Intergenic L2|LINE|L2 -91362 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 341-192 chr16 78623932 78624182 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 524403 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 237-363 chr7 109337228 109337373 + 2 NA Intergenic Intergenic -452713 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 356-174 chr16 11699866 11700077 + 2 NA intron (NR_136674, intron 4 of 8) intron (NR_136674, intron 4 of 8) 31516 NM_003498 8303 Hs.618526 NM_003498 ENSG00000184602 SNN - stannin protein-coding 699-96 chr6 160313359 160313817 + 2 NA Intergenic L1M3e|LINE|L1 -34790 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 247-2 chr1 34994910 34995130 + 2 NA intron (NM_007167, intron 14 of 15) (AT)n|Simple_repeat|Simple_repeat -9673 NM_001195156 100506144 Hs.533986 NM_001195156 ENSG00000243749 TMEM35B ZMYM6NB transmembrane protein 35B protein-coding 639-9 chr10 9427650 9428178 + 2 NA Intergenic Intergenic -132321 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 200-144 chr2 193010742 193010882 + 2 NA Intergenic Intergenic 260967 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 183-119 chr5 68610423 68610532 + 2 NA Intergenic L1MEc|LINE|L1 317900 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 275-387 chr9 97834779 97834990 + 2 NA intron (NR_147055, intron 1 of 10) Charlie23a|DNA|hAT-Charlie 18196 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 653-120 chr8 88373294 88373769 + 2 NA Intergenic Intergenic -46048 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 330-286 chr2 116838560 116838858 + 2 NA Intergenic Intergenic -975982 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 365-388 chr7 157569533 157569721 + 2 NA intron (NM_130843, intron 19 of 21) intron (NM_130843, intron 19 of 21) 4795 NR_029689 406945 NR_029689 ENSG00000207960 MIR153-2 MIRN153-2|mir-153-2 microRNA 153-2 ncRNA 255-38 chr10 84522193 84522359 + 2 NA Intergenic Intergenic 97107 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 114-10 chr12 61109213 61109279 + 2 NA Intergenic Intergenic 1083593 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 395-65 chr12 18587653 18587856 + 2 NA intron (NM_001288774, intron 29 of 32) (AAACA)n|Simple_repeat|Simple_repeat 149755 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 199-34 chr11 58345439 58345587 + 2 NA Intergenic MIRb|SINE|MIR 13556 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 296-220 chr2 53094832 53094991 + 2 NA Intergenic Intergenic -392296 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 282-74 chr11 63473402 63473589 + 2 NA intron (NM_054108, intron 3 of 5) Tigger1|DNA|TcMar-Tigger 17672 NM_001146728 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 254-177 chr2 12256224 12256418 + 2 NA intron (NR_110196, intron 3 of 5) Arthur1B|DNA|hAT-Tip100 57191 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 348-52 chr10 50304182 50304492 + 2 NA Intergenic Intergenic -55727 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 206-296 chrX 144688858 144689024 + 2 NA Intergenic MIR|SINE|MIR -558562 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 507-67 chr12 60097606 60097958 + 2 NA Intergenic Intergenic 408412 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 596-84 chr18 77247456 77247897 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -2172 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 306-98 chr12 15303187 15303389 + 2 NA Intergenic L1MA3|LINE|L1 -19220 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 819-7 chr13 96663423 96663906 + 2 NA intron (NM_153456, intron 1 of 1) L1MB7|LINE|L1 236435 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 281-94 chr12 93191487 93191757 + 2 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) 17256 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 366-26 chr1 177544071 177544355 + 2 NA Intergenic Intergenic -156311 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 370-355 chr4 97939135 97939452 + 2 NA intron (NM_174952, intron 8 of 10) L1PREC2|LINE|L1 204183 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 534-232 chr7 19355017 19355458 + 2 NA Intergenic MLT2B1|LTR|ERVL -209816 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 223-359 chr9 27277390 27277555 + 2 NA intron (NR_026679, intron 5 of 16) intron (NR_026679, intron 5 of 16) 5321 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 318-372 chr3 144029853 144030024 + 2 NA Intergenic Intergenic 56857 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 577-176 chr6 133140351 133140913 + 2 NA Intergenic Intergenic 52552 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 293-374 chr6 88069823 88070062 + 2 NA Intergenic L1M3f|LINE|L1 22101 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 390-33 chr10 34925176 34925414 + 2 NA Intergenic AluJo|SINE|Alu 109527 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 397-164 chr2 108232083 108232324 + 2 NA Intergenic L1MA8|LINE|L1 -7765 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 244-197 chr20 21000173 21000348 + 2 NA Intergenic LTR16A2|LTR|ERVL 106098 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 327-358 chr4 36115877 36116147 + 2 NA intron (NR_146894, intron 25 of 32) MamSINE1|SINE|tRNA-RTE 127927 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 273-313 chr4 30682178 30682387 + 2 NA Intergenic Intergenic -38087 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 307-244 chr2 102554688 102554904 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -64757 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 716-53 chr4 16625633 16626250 + 2 NA intron (NM_001304435, intron 2 of 7) intron (NM_001304435, intron 2 of 7) 272704 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 344-40 chr10 7126882 7127109 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 59789 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 261-271 chr4 31253955 31254194 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 82930 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 370-323 chr3 189076090 189076280 + 2 NA Intergenic Intergenic -95786 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 265-334 chr6 62104762 62104969 + 2 NA intron (NR_146874, intron 2 of 13) L1ME1|LINE|L1 181360 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 568-28 chr11 56660295 56660832 + 2 NA Intergenic Intergenic -3123 NM_001004730 219493 Hs.553633 NM_001004730 ENSG00000172459 OR5AR1 OR11-209 olfactory receptor family 5 subfamily AR member 1 (gene/pseudogene) protein-coding 376-441 chrX 88953993 88954329 + 2 NA Intergenic Intergenic 206936 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 529-63 chr14 33890619 33890949 + 2 NA Intergenic L1MA9|LINE|L1 60290 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 453-7 chr1 66132162 66132429 + 2 NA intron (NM_001037340, intron 1 of 14) MIRb|SINE|MIR -81577 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 137-37 chr17 71265354 71265450 + 2 NA Intergenic Intergenic -63223 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 731-65 chr7 10455996 10456511 + 2 NA intron (NR_147499, intron 2 of 2) L1ME2|LINE|L1 -246423 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 225-52 chr11 21421902 21422086 + 2 NA intron (NM_201551, intron 15 of 18) L1M4c|LINE|L1 752408 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 256-335 chr5 124348102 124348278 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 90330 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 326-253 chr2 104258236 104258422 + 2 NA Intergenic L1MA1|LINE|L1 150003 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 312-335 chr3 96526412 96526660 + 2 NA Intergenic L1MC3|LINE|L1 166572 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 267-451 chr9 80862570 80862829 + 2 NA Intergenic L1MEc|LINE|L1 826836 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 263-3 chr1 41295865 41296009 + 2 NA Intergenic MIRb|SINE|MIR -53631 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 260-452 chr8 143168801 143168970 + 2 NA Intergenic Intergenic -8231 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 318-99 chr11 31636620 31636822 + 2 NA intron (NM_001288725, intron 7 of 10) intron (NM_001288725, intron 7 of 10) 126954 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 454-136 chr2 7322806 7323073 + 2 NA Intergenic MIR3|SINE|MIR -98322 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 348-206 chr18 78184576 78184792 + 2 NA Intergenic L1M2|LINE|L1 -190957 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 458-164 chr22 48122586 48122891 + 2 NA Intergenic AluSz|SINE|Alu -151626 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 645-113 chr7 64469401 64469868 + 2 NA Intergenic Intergenic 35941 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 287-9 chr1 60154660 60154900 + 2 NA Intergenic Intergenic -81010 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 794-35 chr4 133291502 133291906 + 2 NA Intergenic Intergenic 142410 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 412-13 chr1 169223042 169223384 + 2 NA intron (NR_104229, intron 10 of 12) L1MC4|LINE|L1 116523 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 342-339 chr3 175551844 175552050 + 2 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 182407 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 320-463 chr5 141270186 141270458 + 2 NA Intergenic L1MC4a|LINE|L1 24927 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 421-195 chr3 140664637 140664949 + 2 NA Intergenic L1PB1|LINE|L1 -13271 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 363-81 chr11 74875474 74875658 + 2 NA intron (NM_001270381, intron 8 of 15) HUERS-P3-int|LTR|ERV1 73525 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 530-16 chr1 209643481 209643919 + 2 NA intron (NM_001017402, intron 2 of 21) intron (NM_001017402, intron 2 of 21) 7634 NM_001017402 3914 Hs.497636 NM_000228 ENSG00000196878 LAMB3 AI1A|BM600-125KDA|LAM5|LAMNB1 laminin subunit beta 3 protein-coding 338-458 chr5_GL383531v1_alt 16198 16421 + 2 NA NA L1M4b|LINE|L1 NA NA 273-315 chr4 32064795 32064973 + 2 NA intron (NR_125936, intron 1 of 2) L1MEg|LINE|L1 -42462 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 261-127 chr16 26307252 26307504 + 2 NA Intergenic Intergenic 282141 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 184-158 chr7 40944793 40944890 + 2 NA Intergenic L1PB3|LINE|L1 35098 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 329-425 chr4 131540808 131541046 + 2 NA Intergenic Intergenic -223911 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 524-45 chr12 13587381 13587801 + 2 NA intron (NM_000834, intron 9 of 12) AluJb|SINE|Alu -210846 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 331-502 chr7 67687804 67687981 + 2 NA Intergenic L1MEd|LINE|L1 -332361 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 304-25 chr1 174206084 174206321 + 2 NA intron (NM_001366445, intron 1 of 13) intron (NM_001366445, intron 1 of 13) 46682 NM_001366446 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 337-500 chr6 122821483 122821674 + 2 NA Intergenic LTR82A|LTR|ERVL 32320 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 245-305 chr6 90721628 90721798 + 2 NA Intergenic Intergenic -134641 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 373-359 chr6 66078557 66078839 + 2 NA Intergenic L1MA8|LINE|L1 290819 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 356-56 chr10 66891464 66891769 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -34420 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 329-362 chr3 59261856 59262057 + 2 NA Intergenic L3|LINE|CR1 -211924 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 276-233 chr2 82892132 82892357 + 2 NA Intergenic Intergenic 35441 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 205-125 chr18 63530981 63531178 + 2 NA Intergenic Intergenic -25081 NM_001307928 89777 Hs.348541 NM_080474 ENSG00000166634 SERPINB12 YUKOPIN serpin family B member 12 protein-coding 462-238 chr5 148462510 148462912 + 2 NA intron (NM_001040169, intron 5 of 5) L1MC1|LINE|L1 78753 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 306-316 chr3 89031402 89031648 + 2 NA Intergenic Intergenic -76096 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 186-94 chr2 222536130 222536305 + 2 NA intron (NM_152386, intron 4 of 4) intron (NM_152386, intron 4 of 4) 111674 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 375-377 chr7 42279504 42279816 + 2 NA Intergenic L1MD2|LINE|L1 -42451 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 182-137 chr5 57807461 57807584 + 2 NA Intergenic Intergenic 91640 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 329-221 chr17 71523565 71523735 + 2 NA Intergenic L1M4a1|LINE|L1 -321471 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 345-315 chr21 16620278 16620554 + 2 NA intron (NR_136541, intron 7 of 9) L1MD2|LINE|L1 30179 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 304-547 chr9 81442741 81442952 + 2 NA Intergenic L1MB1|LINE|L1 246689 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 284-131 chr15 38902331 38902607 + 2 NA Intergenic Intergenic 205871 NR_160786 165-117 chr6 147465447 147465544 + 2 NA Intergenic L1MC1|LINE|L1 -43195 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 242-161 chr2 12662950 12663133 + 2 NA Intergenic MIR1_Amn|SINE|MIR -53831 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 350-119 chr13 73891271 73891618 + 2 NA intron (NM_007249, intron 3 of 7) intron (NM_007249, intron 3 of 7) 242485 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 640-61 chr2 59449309 59449793 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 231843 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 167-96 chr5 96494220 96494328 + 2 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -61026 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 278-437 chr8 134080985 134081172 + 2 NA Intergenic L1MD1|LINE|L1 194582 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 220-390 chr9 25146219 25146400 + 2 NA Intergenic L1MB8|LINE|L1 532549 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 381-32 chr1 235840971 235841182 + 2 NA intron (NR_102436, intron 1 of 3) intron (NR_102436, intron 1 of 3) 11984 NR_031718 100302139 NR_031718 ENSG00000222831 MIR1537 MIRN1537|hsa-mir-1537|mir-1537 microRNA 1537 ncRNA 259-292 chr4 103570717 103570904 + 2 NA Intergenic Intergenic 145768 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 340-115 chr12 83057611 83057872 + 2 NA intron (NM_152588, intron 10 of 11) intron (NM_152588, intron 10 of 11) 370586 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 352-258 chr2 177804469 177804700 + 2 NA intron (NM_001077197, intron 10 of 20) L1PB4|LINE|L1 84172 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 248-367 chr7 17966640 17966833 + 2 NA Intergenic Intergenic -26228 NM_001350868 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 232-398 chr9 70944382 70944586 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -75432 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 309-562 chr8 129602099 129602380 + 2 NA intron (NR_130917, intron 1 of 3) L1MB5|LINE|L1 -27221 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 476-282 chr9 30618864 30619304 + 2 NA Intergenic L1MB4|LINE|L1 -210630 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 336-311 chr2 239772047 239772345 + 2 NA intron (NR_037808, intron 1 of 2) intron (NR_037808, intron 1 of 2) 9336 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 249-371 chr7 356134 356336 + 2 NA Intergenic Intergenic -23190 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 479-153 chr4 25472224 25472533 + 2 NA Intergenic Intergenic 95115 NM_013367 29945 Hs.152173 NM_013367 ENSG00000053900 ANAPC4 APC4 anaphase promoting complex subunit 4 protein-coding 128-17 chr13 98133246 98133347 + 2 NA Intergenic L1ME4b|LINE|L1 -9293 NM_001286839 10160 Hs.403917 NM_005766 ENSG00000152767 FARP1 CDEP|FARP1-IT1|PLEKHC2|PPP1R75 FERM, ARH/RhoGEF and pleckstrin domain protein 1 protein-coding 339-583 chr8 110009140 110009328 + 2 NA Intergenic L1M1|LINE|L1 -33463 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 292-97 chr12 29579432 29579666 + 2 NA intron (NM_001367875, intron 10 of 19) Charlie24|DNA|hAT-Charlie -79856 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 306-564 chrX 88056394 88056621 + 2 NA Intergenic L1MB4|LINE|L1 538705 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 607-106 chr4 42774625 42775164 + 2 NA Intergenic L1PB1|LINE|L1 -117789 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 584-167 chr8 34424515 34424953 + 2 NA Intergenic Intergenic -359187 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 275-209 chr2 168941598 168941846 + 2 NA intron (NM_003742, intron 21 of 27) Tigger1|DNA|TcMar-Tigger 40431 NM_021176 57818 Hs.283963 NM_021176 ENSG00000152254 G6PC2 IGRP glucose-6-phosphatase catalytic subunit 2 protein-coding 412-48 chr11 29737613 29737857 + 2 NA Intergenic Intergenic 118933 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 381-151 chr18 28843676 28843919 + 2 NA Intergenic L1PB2|LINE|L1 -666667 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 570-150 chr4 169191104 169191628 + 2 NA intron (NM_020870, intron 2 of 11) L1PB1|LINE|L1 79590 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 199-82 chr17 69086168 69086314 + 2 NA intron (NM_080284, intron 30 of 38) L2a|LINE|L2 -13301 NR_049834 100847008 NR_049834 ENSG00000265331 MIR4524B - microRNA 4524b ncRNA 346-527 chr9 87475667 87475944 + 2 NA Intergenic Intergenic -21423 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 384-17 chr1 118128232 118128466 + 2 NA intron (NM_206996, intron 3 of 48) L1MA5|LINE|L1 56879 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 483-254 chr8 26178673 26178994 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -112675 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 301-160 chr17 44275649 44275846 + 2 NA Intergenic AluSz6|SINE|Alu -7612 NM_000342 6521 Hs.210751 NM_000342 ENSG00000004939 SLC4A1 AE1|BND3|CD233|CHC|DI|EMPB3|EPB3|FR|RTA1A|SAO|SPH4|SW|WD|WD1|WR solute carrier family 4 member 1 (Diego blood group) protein-coding 147-71 chr5 34870757 34870855 + 2 NA intron (NM_001317949, intron 8 of 10) L1MD|LINE|L1 31425 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 726-62 chr5 99941452 99941850 + 2 NA Intergenic Intergenic 407661 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 311-119 chr13 66746669 66746921 + 2 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -78374 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 511-157 chr21 26342733 26343083 + 2 NA Intergenic Intergenic -50727 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 721-84 chr8 133535626 133536007 + 2 NA intron (NM_003033, intron 2 of 8) Tigger1|DNA|TcMar-Tigger 36071 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 112-11 chr13 35297040 35297131 + 2 NA intron (NM_015678, intron 35 of 57) L1MD2|LINE|L1 179604 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 192-119 chr20 38554375 38554521 + 2 NA intron (NM_001282917, intron 22 of 29) intron (NM_001282917, intron 22 of 29) -26749 NM_001018082 149685 Hs.368028 NM_174906 ENSG00000182035 ADIG SMAF1 adipogenin protein-coding 589-60 chr2 6436273 6436824 + 2 NA Intergenic Intergenic -61126 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 259-406 chr8 106336121 106336338 + 2 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 66051 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 319-373 chr4 61183164 61183337 + 2 NA Intergenic Intergenic -17980 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 199-65 chr15 53073234 53073415 + 2 NA Intergenic Intergenic -43041 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 248-113 chr14 57866329 57866529 + 2 NA promoter-TSS (NR_159373) promoter-TSS (NR_159373) -337 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 254-428 chr8 129275419 129275584 + 2 NA Intergenic L1M2|LINE|L1 -34261 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 281-188 chr19 51547458 51547729 + 2 NA Intergenic MER54B|LTR|ERVL -15923 NM_001177549 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 126-23 chr14 48082495 48082589 + 2 NA Intergenic L1MCb|LINE|L1 -287528 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 263-371 chr6 134836403 134836660 + 2 NA Intergenic Intergenic 113570 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 452-129 chr2 79681048 79681442 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -31886 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 286-449 chr8 73992138 73992293 + 2 NA intron (NM_001195797, intron 1 of 3) intron (NM_001195797, intron 1 of 3) 823 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 400-233 chr3 169675294 169675561 + 2 NA Intergenic L1MEd|LINE|L1 -11715 NM_001366466 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 298-23 chr1 210140154 210140398 + 2 NA intron (NM_153262, intron 6 of 7) L1MB7|LINE|L1 -92520 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 226-92 chr14 62629930 62630122 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 415432 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 220-321 chr6 92603814 92603976 + 2 NA Intergenic L1MA1|LINE|L1 815664 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 569-99 chr2 122709849 122710302 + 2 NA Intergenic L1ME3C|LINE|L1 363406 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 286-111 chr14 36545502 36545725 + 2 NA Intergenic Intergenic -25381 NM_001079668 7080 Hs.94367 NM_003317 ENSG00000136352 NKX2-1 BCH|BHC|NK-2|NKX2.1|NKX2A|NMTC1|T/EBP|TEBP|TITF1|TTF-1|TTF1 NK2 homeobox 1 protein-coding 287-86 chr11 30847407 30847653 + 2 NA Intergenic Intergenic 145156 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 379-176 chr2 181876863 181877158 + 2 NA Intergenic Intergenic -14720 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 373-362 chr6 79707306 79707568 + 2 NA Intergenic AluSz6|SINE|Alu 76108 NM_031469 83699 Hs.302772 NM_031469 ENSG00000198478 SH3BGRL2 - SH3 domain binding glutamate rich protein like 2 protein-coding 318-36 chr1 191680403 191680621 + 2 NA Intergenic L1MA3|LINE|L1 -452014 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 518-236 chr5 62711916 62712355 + 2 NA Intergenic Intergenic 133316 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 498-215 chr5 57980289 57980635 + 2 NA Intergenic Intergenic -81300 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 339-68 chr10 80887743 80888007 + 2 NA Intergenic L1MC|LINE|L1 238078 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 322-475 chr6 165288852 165289082 + 2 NA intron (NM_144980, intron 7 of 8) (TAAAA)n|Simple_repeat|Simple_repeat 20638 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 552-179 chr5 133860749 133861151 + 2 NA Intergenic Intergenic -52727 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 324-5 chr1 33200596 33200878 + 2 NA Intergenic L1MEc|LINE|L1 -18694 NM_018207 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 342-349 chr4 28843646 28843867 + 2 NA Intergenic Intergenic 24174 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 282-34 chr10 14134765 14134968 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 60582 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 360-265 chr20 43301126 43301336 + 2 NA Intergenic Intergenic -111325 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 324-187 chr15 87900375 87900650 + 2 NA intron (NM_001012338, intron 17 of 19) MIR3|SINE|MIR 45756 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 347-344 chr4 54714260 54714455 + 2 NA intron (NM_000222, intron 7 of 20) intron (NM_000222, intron 7 of 20) 56429 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 334-216 chr18 2377483 2377670 + 2 NA Intergenic Intergenic 193929 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 167-49 chr19 29155472 29155599 + 2 NA Intergenic L1ME3Cz|LINE|L1 57616 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 482-9 chr1 83594739 83595095 + 2 NA intron (NR_119375, intron 2 of 2) L1ME1|LINE|L1 148863 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 547-33 chr11 40820895 40821376 + 2 NA intron (NM_020929, intron 1 of 4) L1ME3|LINE|L1 -528005 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 342-267 chr2 220523757 220524066 + 2 NA Intergenic L1ME4a|LINE|L1 -617346 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 250-344 chr5 64115186 64115400 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -50550 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 281-461 chr9 102052511 102052690 + 2 NA Intergenic Intergenic -314020 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 198-132 chr2 126720632 126720788 + 2 NA Intergenic Intergenic 64552 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 173-8 chr1 184174598 184174733 + 2 NA Intergenic L1MB8|LINE|L1 122935 NM_001300766 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 506-152 chr2 121669304 121669678 + 2 NA intron (NR_037857, intron 2 of 3) L1PBa|LINE|L1 19502 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 380-225 chr21 23726777 23727008 + 2 NA Intergenic Intergenic -342057 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 169-111 chr6 120647163 120647271 + 2 NA Intergenic Intergenic 632038 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 284-402 chr8 54201669 54201877 + 2 NA Intergenic L1MA4|LINE|L1 66532 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 300-412 chr7 3877519 3877787 + 2 NA intron (NM_152744, intron 5 of 44) L1ME4a|LINE|L1 -252032 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 184-85 chr2 47119033 47119213 + 2 NA intron (NM_001163561, intron 5 of 6) intron (NM_001163561, intron 5 of 6) 36185 NM_001163561 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 414-37 chr10 126899080 126899443 + 2 NA Intergenic L1MEc|LINE|L1 -6148 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 425-255 chr6 23094392 23094627 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -376585 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 558-67 chr16 8322943 8323432 + 2 NA Intergenic Intergenic 266651 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 404-214 chr3 105248699 105248929 + 2 NA Intergenic Intergenic -117899 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 349-63 chr10 61420908 61421238 + 2 NA intron (NR_134508, intron 4 of 6) L1ME1|LINE|L1 -31566 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 302-425 chr7 141308964 141309246 + 2 NA intron (NM_001195278, intron 2 of 3) L1ME4a|LINE|L1 235041 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 303-183 chr19 28075502 28075664 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -281643 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 243-417 chr7 50556047 50556201 + 2 NA intron (NM_001082971, intron 1 of 14) intron (NM_001082971, intron 1 of 14) 4947 NM_001242887 1644 Hs.359698 NM_000790 ENSG00000132437 DDC AADC dopa decarboxylase protein-coding 302-347 chr5 50329902 50330182 + 2 NA Intergenic Intergenic 111246 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 547-178 chr5 35953060 35953460 + 2 NA 3' UTR (NM_152404, exon 7 of 7) 3' UTR (NM_152404, exon 7 of 7) 14459 NR_104630 100506406 Hs.116864 NR_104630 ENSG00000249748 LOC100506406 - uncharacterized LOC100506406 ncRNA 317-144 chr14 54618092 54618295 + 2 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 50581 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 261-339 chr6 140123544 140123707 + 2 NA Intergenic L2a|LINE|L2 -81627 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 313-390 chr4 82305001 82305202 + 2 NA Intergenic L1MC5a|LINE|L1 68890 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 259-146 chr16 13599910 13600137 + 2 NA Intergenic MIRb|SINE|MIR -320134 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 292-22 chr1 110810020 110810234 + 2 NA Intergenic L1MA9|LINE|L1 -61072 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 477-216 chr3 194936412 194936841 + 2 NA Intergenic MIRb|SINE|MIR -157962 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 348-293 chr3 44247836 44248165 + 2 NA intron (NM_001145030, intron 2 of 19) HAL1b|LINE|L1 6114 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 266-158 chr18 64743917 64744095 + 2 NA Intergenic L1M2|LINE|L1 -483951 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 370-403 chr6 129180238 129180456 + 2 NA intron (NM_000426, intron 10 of 64) intron (NM_000426, intron 10 of 64) 297206 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 447-255 chr8 31375876 31376223 + 2 NA Intergenic L1PA15|LINE|L1 -263703 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 352-27 chr1 208670400 208670641 + 2 NA Intergenic L2a|LINE|L2 -58168 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 208-100 chr18 58597310 58597456 + 2 NA intron (NM_052947, intron 3 of 12) MIR|SINE|MIR -3237 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 290-225 chr2 160741483 160741747 + 2 NA Intergenic L2c|LINE|L2 -247808 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 450-151 chr2 153556062 153556494 + 2 NA Intergenic Intergenic -77516 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 256-417 chr8 78749178 78749399 + 2 NA intron (NM_001199886, intron 2 of 4) Tigger13a|DNA|TcMar-Tigger -24914 NR_077236 101241902 Hs.388511 NR_077236 LOC101241902 - chromosome 4 open reading frame 46 pseudogene pseudo 271-338 chr5 28458920 28459158 + 2 NA Intergenic L1MC4|LINE|L1 -171374 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 227-403 chr9 107942275 107942453 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -452595 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 128-7 chr10 28337664 28337777 + 2 NA Intergenic Intergenic -34656 NM_001318170 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 497-66 chr12 129309225 129309537 + 2 NA intron (NM_133448, intron 4 of 8) intron (NM_133448, intron 4 of 8) 100780 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 244-167 chr2 83987865 83988073 + 2 NA Intergenic L1MB5|LINE|L1 -302713 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 607-103 chr3 182573123 182573585 + 2 NA Intergenic L1M2c|LINE|L1 -66230 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 319-223 chr19 56608026 56608265 + 2 NA intron (NR_163263, intron 2 of 4) L1MB3|LINE|L1 12843 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 258-174 chr19 7120689 7120930 + 2 NA intron (NM_001079817, intron 18 of 20) intron (NM_001079817, intron 18 of 20) 51106 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 499-219 chr6 13996743 13997209 + 2 NA Intergenic L2c|LINE|L2 71783 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 519-44 chr12 13705062 13705417 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 275117 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 408-214 chr3 113061175 113061517 + 2 NA Intergenic L1MC4|LINE|L1 -41675 NM_001319112 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 289-341 chr4 77344967 77345201 + 2 NA Intergenic Intergenic -166669 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 214-50 chr10 106698014 106698190 + 2 NA intron (NM_001206569, intron 9 of 25) intron (NM_001206569, intron 9 of 25) 466604 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 129-83 chr9 110197379 110197476 + 2 NA Intergenic Intergenic 10706 NM_001012993 401546 Hs.125608 NM_001012993 ENSG00000188959 C9orf152 bA470J20.2 chromosome 9 open reading frame 152 protein-coding 313-332 chr3 34952331 34952503 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 441606 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 422-117 chr17 73917725 73918009 + 2 NA Intergenic L1ME1|LINE|L1 -89330 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 371-19 chr1 172360017 172360302 + 2 NA intron (NM_015569, intron 17 of 20) intron (NM_015569, intron 17 of 20) -60526 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 216-338 chr8 107374315 107374460 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -37872 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 169-112 chr6 146800631 146800728 + 2 NA TTS (NR_003954) TTS (NR_003954) 3145 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 408-330 chr8 29634463 29634710 + 2 NA Intergenic L3|LINE|CR1 113523 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 595-158 chr8 59450860 59451257 + 2 NA Intergenic Intergenic 331848 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 330-257 chr2 48266056 48266296 + 2 NA Intergenic Intergenic -48506 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 320-493 chr6 118156380 118156650 + 2 NA intron (NM_001029858, intron 2 of 7) L1PA6|LINE|L1 70612 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 630-118 chr6 78757040 78757417 + 2 NA Intergenic L1P2|LINE|L1 -110323 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 273-475 chr9 122505297 122505465 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -5421 NM_054107 26740 Hs.460145 NM_054107 ENSG00000197233 OR1J2 HG152|HSA5|OR1J3|OR1J5|OR9-19|OST044 olfactory receptor family 1 subfamily J member 2 protein-coding 313-448 chr5 143934397 143934659 + 2 NA Intergenic L1MA2|LINE|L1 122367 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 164-51 chr19 46301360 46301481 + 2 NA intron (NM_152796, intron 1 of 11) MIR|SINE|MIR -2199 NM_152794 64344 Hs.420830 NM_022462 ENSG00000124440 HIF3A HIF-3A|HIF3-alpha-1|IPAS|MOP7|PASD7|bHLHe17 hypoxia inducible factor 3 subunit alpha protein-coding 203-43 chr12 10632766 10632909 + 2 NA intron (NM_018423, intron 4 of 10) L2a|LINE|L2 -19228 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 204-300 chr8 137514928 137515045 + 2 NA Intergenic MER53|DNA|hAT -101398 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 256-26 chr1 215814405 215814651 + 2 NA intron (NM_206933, intron 48 of 71) intron (NM_206933, intron 48 of 71) 247224 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 393-44 chr10 105017457 105017803 + 2 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -351414 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 239-402 chr8 83574322 83574496 + 2 NA Intergenic Intergenic 170651 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 146-51 chr21 24381423 24381524 + 2 NA Intergenic L1MEd|LINE|L1 -47267 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 416-165 chr2 46715273 46715574 + 2 NA intron (NM_144949, intron 1 of 1) L1ME2|LINE|L1 16128 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 144-33 chr16 84771917 84772038 + 2 NA intron (NR_073577, intron 9 of 11) Charlie4z|DNA|hAT-Charlie -48008 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 355-504 chr8 101219545 101219817 + 2 NA Intergenic L1MA5|LINE|L1 -13617 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 243-70 chr11 62350916 62351135 + 2 NA intron (NM_025080, intron 2 of 6) L1MDa|LINE|L1 13577 NM_001083926 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 324-343 chr3 35718628 35718793 + 2 NA intron (NM_016300, intron 13 of 19) intron (NM_016300, intron 13 of 19) -25766 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 543-21 chr1 217813729 217814147 + 2 NA intron (NM_138796, intron 9 of 10) intron (NM_138796, intron 9 of 10) -28818 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 638-93 chr3 112239622 112240144 + 2 NA exon (NM_183061, exon 12 of 29) exon (NM_183061, exon 12 of 29) 54333 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 325-24 chr1 158521752 158521970 + 2 NA Intergenic L1M3a|LINE|L1 26244 NM_001005189 391112 Hs.553780 NM_001005189 ENSG00000197532 OR6Y1 OR1-11|OR6Y2 olfactory receptor family 6 subfamily Y member 1 protein-coding 122-46 chr6 50352824 50352893 + 2 NA Intergenic L1PB3|LINE|L1 -302929 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 483-136 chr20 7589735 7590113 + 2 NA Intergenic L2a|LINE|L2 218316 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 675-11 chr10 56625908 56626356 + 2 NA Intergenic LTR57-int|LTR|ERVL -264859 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 523-98 chr16 64562320 64562693 + 2 NA Intergenic Intergenic 559557 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 532-285 chr9 84035312 84035650 + 2 NA Intergenic L1MA1|LINE|L1 -27962 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 269-124 chr14 81070862 81071039 + 2 NA intron (NM_001142626, intron 3 of 8) L1MEg|LINE|L1 115329 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 212-220 chr3 116983155 116983313 + 2 NA Intergenic L1ME4b|LINE|L1 61803 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 387-28 chr1 248223830 248224059 + 2 NA Intergenic L1PA15|LINE|L1 -14985 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 617-25 chr12 67863597 67863975 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -65449 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 455-11 chr1 105489773 105490113 + 2 NA Intergenic MER101B|LTR|ERV1 128992 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 267-75 chr11 132981842 132982046 + 2 NA intron (NM_001012393, intron 1 of 7) MIRb|SINE|MIR -38176 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 372-276 chr20 7649637 7649876 + 2 NA Intergenic Intergenic 278148 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 435-6 chr1 57911097 57911364 + 2 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 50649 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 260-7 chr1 88420583 88420745 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -263480 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 365-330 chr5 112068456 112068687 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -91639 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 256-120 chr14 44747151 44747371 + 2 NA Intergenic L1MA2|LINE|L1 51865 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 358-220 chr2 81108281 81108603 + 2 NA Intergenic L1MA3|LINE|L1 358504 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 274-284 chr4 63709970 63710177 + 2 NA Intergenic HAL1|LINE|L1 699377 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 169-125 chr7 91777574 91777692 + 2 NA Intergenic Intergenic 103069 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 250-85 chr12 28356171 28356366 + 2 NA intron (NM_001352084, intron 6 of 11) intron (NM_001352084, intron 6 of 11) -165530 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 272-154 chr17 70042703 70042847 + 2 NA Intergenic L2c|LINE|L2 -8496 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 452-138 chr2 142813888 142814150 + 2 NA Intergenic LTR33A_|LTR|ERVL -63645 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 326-80 chr10 106306925 106307207 + 2 NA Intergenic Intergenic 166901 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 410-148 chr2 155353804 155354086 + 2 NA Intergenic L1MCa|LINE|L1 655250 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 268-173 chr19 53323246 53323415 + 2 NA Intergenic L1M4|LINE|L1 -10389 NM_001321524 91664 Hs.720672 NM_138374 ENSG00000213799 ZNF845 - zinc finger protein 845 protein-coding 661-72 chr4 57126553 57127154 + 2 NA intron (NR_034081, intron 1 of 4) THE1B-int|LTR|ERVL-MaLR -16468 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 226-12 chr1 79117952 79118108 + 2 NA Intergenic Intergenic -111300 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 352-499 chr7 51505648 51505874 + 2 NA Intergenic L1M5|LINE|L1 -112505 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 332-251 chr2 79572140 79572356 + 2 NA intron (NM_001282598, intron 1 of 17) Charlie15a|DNA|hAT-Charlie 49065 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 300-225 chr2 227062199 227062398 + 2 NA intron (NM_000092, intron 26 of 47) intron (NM_000092, intron 26 of 47) 102261 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 400-76 chr12 131021096 131021442 + 2 NA intron (NM_198827, intron 13 of 24) L1MC4a|LINE|L1 -27293 NR_131951 105755954 Hs.677534 NR_131950 ADGRD1-AS1 LACAT8 ADGRD1 antisense RNA 1 ncRNA 519-153 chr3 187088192 187088504 + 2 NA Intergenic L1MA7|LINE|L1 49630 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 226-207 chr21 30654462 30654628 + 2 NA Intergenic Intergenic 11681 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 153-63 chr21 32178573 32178697 + 2 NA Intergenic L1MEd|LINE|L1 -92340 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 236-144 chr17 54056954 54057181 + 2 NA Intergenic Intergenic 234140 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 372-496 chr8 127156155 127156406 + 2 NA Intergenic L1PB1|LINE|L1 41347 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 241-238 chr3 88598372 88598554 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 260007 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 154-99 chr7 24480773 24480880 + 2 NA Intergenic Intergenic -92626 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 322-226 chr19 30250957 30251207 + 2 NA Intergenic Intergenic -121302 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 213-117 chr17 59151313 59151495 + 2 NA promoter-TSS (NR_029842) promoter-TSS (NR_029842) -183 NR_029842 407027 NR_029842 ENSG00000207996 MIR301A MIR301|MIRN301|MIRN301A|mir-301a microRNA 301a ncRNA 346-460 chr7 31008172 31008448 + 2 NA Intergenic Intergenic -43998 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 252-40 chr10 52246199 52246401 + 2 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 67828 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 370-25 chr1 205881119 205881348 + 2 NA intron (NR_046097, intron 1 of 2) L1MA5A|LINE|L1 -8787 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 354-240 chr2 183268571 183268857 + 2 NA Intergenic L1P4|LINE|L1 144271 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 369-297 chr4 97488106 97488383 + 2 NA intron (NR_102713, intron 4 of 5) L1ME3Cz|LINE|L1 121318 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 301-214 chr2 100849377 100849550 + 2 NA intron (NM_002518, intron 1 of 20) MIRc|SINE|MIR 29324 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 445-80 chr15 72952377 72952615 + 2 NA Intergenic Intergenic -99967 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 429-203 chr3 164821420 164821668 + 2 NA intron (NR_126405, intron 1 of 3) intron (NR_126405, intron 1 of 3) 9936 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 232-185 chr2 128044370 128044574 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -16413 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 131-2 chr1 41071421 41071515 + 2 NA intron (NM_001172218, intron 10 of 15) intron (NM_001172218, intron 10 of 15) -49713 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 199-18 chr10 23857551 23857669 + 2 NA intron (NM_001098500, intron 1 of 18) MER5A|DNA|hAT-Charlie 162883 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 356-375 chr4 166880833 166881108 + 2 NA intron (NM_001040159, intron 6 of 10) intron (NM_001040159, intron 6 of 10) 353456 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 171-73 chr22 24492064 24492195 + 2 NA intron (NR_028483, intron 1 of 7) L2c|LINE|L2 2945 NR_028484 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 388-255 chr4 90521622 90521855 + 2 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 286707 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 314-620 chrX 45411228 45411424 + 2 NA Intergenic L1MEd|LINE|L1 -94062 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 319-168 chr16 6420631 6420902 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -353043 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 154-70 chr3 87569303 87569387 + 2 NA Intergenic Intergenic -223361 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 371-304 chr5 27207401 27207711 + 2 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat -168970 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 351-23 chr1 210893308 210893515 + 2 NA intron (NM_002238, intron 7 of 10) L1MEc|LINE|L1 239963 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 337-152 chr14 54459583 54459799 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -18317 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 211-31 chr10 56517120 56517288 + 2 NA Intergenic Intergenic -155931 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 279-59 chr10 115073724 115073968 + 2 NA Intergenic Intergenic -19519 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 387-231 chr3 107932675 107933059 + 2 NA Intergenic L1MEg|LINE|L1 49662 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 217-339 chr7 2922908 2923114 + 2 NA intron (NM_001324281, intron 17 of 25) intron (NM_001324281, intron 17 of 25) -78703 NM_007353 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 531-45 chr12 47287169 47287647 + 2 NA Intergenic AluY|SINE|Alu 19991 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 583-6 chr1 114170292 114170681 + 2 NA Intergenic Intergenic -16617 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 304-496 chr8 2835091 2835335 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -106762 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 228-274 chr5 110102800 110102974 + 2 NA Intergenic Intergenic 219705 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 520-327 chr9 103572237 103572605 + 2 NA Intergenic L1ME3B|LINE|L1 -247388 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 314-302 chr2 124707791 124708075 + 2 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 682646 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 146-13 chr10 68468702 68468792 + 2 NA intron (NM_001080449, intron 2 of 20) intron (NM_001080449, intron 2 of 20) 3226 NM_001080449 1763 Hs.532446 NM_001080449 ENSG00000138346 DNA2 DNA2L|hDNA2 DNA replication helicase/nuclease 2 protein-coding 369-416 chr8 115861503 115861812 + 2 NA Intergenic Intergenic -192682 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 301-119 chr14 48074692 48074877 + 2 NA Intergenic Intergenic -279770 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 568-41 chr13 61346428 61346828 + 2 NA Intergenic Intergenic 68894 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 197-73 chr17 10493533 10493706 + 2 NA intron (NM_005963, intron 39 of 39) L2c|LINE|L2 -24060 NM_017533 4622 Hs.711141 NM_017533 ENSG00000264424 MYH4 MYH2B|MyHC-2B|MyHC-IIb myosin heavy chain 4 protein-coding 240-274 chr22 27117669 27117836 + 2 NA Intergenic L1MB7|LINE|L1 -57234 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 351-520 chr9 113721181 113721516 + 2 NA Intergenic AluJr|SINE|Alu 127219 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 293-347 chr5 107703666 107703937 + 2 NA Intergenic L1ME3Cz|LINE|L1 -32864 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 333-524 chr7 7935077 7935292 + 2 NA Intergenic L2|LINE|L2 33568 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 272-196 chr2 72179139 72179384 + 2 NA non-coding (NR_135773, exon 22 of 22) non-coding (NR_135773, exon 22 of 22) -31399 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 465-186 chr3 139860593 139860975 + 2 NA Intergenic L2b|LINE|L2 -74401 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 311-526 chr8 127261802 127262052 + 2 NA intron (NR_117099, intron 1 of 3) L1MA7|LINE|L1 17290 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 553-155 chr3 110681449 110681928 + 2 NA Intergenic Intergenic 388271 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 245-214 chr2 227174095 227174259 + 2 NA intron (NM_000091, intron 1 of 51) intron (NM_000091, intron 1 of 51) 9612 NM_000091 1285 Hs.570065 NM_000091 ENSG00000169031 COL4A3 ATS2|ATS3 collagen type IV alpha 3 chain protein-coding 244-56 chr11 61050858 61051019 + 2 NA Intergenic MER34A|LTR|ERV1 -43025 NM_001346456 921 Hs.58685 NM_014207 ENSG00000110448 CD5 LEU1|T1 CD5 molecule protein-coding 247-237 chr20 54407571 54407746 + 2 NA Intergenic Intergenic -67935 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 409-84 chr14 82929912 82930221 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 287434 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 519-129 chr2 240938990 240939410 + 2 NA intron (NM_001351305, intron 14 of 31) L1ME2|LINE|L1 28251 NR_033841 200772 Hs.647893 NR_033841 ENSG00000233392 LOC200772 - uncharacterized LOC200772 ncRNA 350-152 chr15 24701312 24701506 + 2 NA Intergenic L1MC3|LINE|L1 26015 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 321-352 chr22 34656183 34656424 + 2 NA Intergenic Intergenic 341613 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 468-272 chr5 174063452 174063796 + 2 NA intron (NM_015980, intron 2 of 4) L1MA1|LINE|L1 17918 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 286-228 chr2 181643080 181643251 + 2 NA intron (NR_027690, intron 1 of 11) intron (NR_027690, intron 1 of 11) 13940 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 306-403 chr5 104709591 104709869 + 2 NA Intergenic MER54A|LTR|ERVL -389744 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 186-28 chr12 1544046 1544199 + 2 NA Intergenic L1MEf|LINE|L1 -11930 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 312-550 chr9 91083833 91084007 + 2 NA Intergenic MER4D|LTR|ERV1 -8788 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 636-54 chr15 64256139 64256623 + 2 NA intron (NM_001329607, intron 3 of 11) intron (NM_001329607, intron 3 of 11) -93226 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 273-114 chr12 119027295 119027483 + 2 NA intron (NM_194286, intron 1 of 12) MIRc|SINE|MIR 45848 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 701-81 chr6 39145600 39146024 + 2 NA Intergenic Intergenic -30626 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 554-54 chr12 5126214 5126650 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 82553 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 284-25 chr10 9934831 9935030 + 2 NA Intergenic Intergenic -123792 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 213-209 chr4 77555137 77555330 + 2 NA intron (NM_006419, intron 1 of 4) L1ME1|LINE|L1 43480 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 236-63 chr11 19537744 19537928 + 2 NA intron (NM_001111018, intron 1 of 37) MIR|SINE|MIR -13758 NR_033989 399876 Hs.132600 NR_033989 ENSG00000254622 NAV2-AS4 - NAV2 antisense RNA 4 ncRNA 294-250 chr2 220972360 220972545 + 2 NA Intergenic Intergenic 599852 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 351-316 chr3 164439983 164440291 + 2 NA Intergenic L1MD3|LINE|L1 -268581 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 382-169 chr2 4231177 4231469 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 257162 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 669-87 chr5 18180350 18180886 + 2 NA Intergenic Intergenic 373344 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 238-82 chr12 34423497 34423706 + 2 NA Intergenic ALR/Alpha|Satellite|centr 401105 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 379-78 chr13 25452919 25453113 + 2 NA intron (NM_016529, intron 1 of 36) AluSx1|SINE|Alu -15758 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 190-115 chr3 22539182 22539349 + 2 NA Intergenic Intergenic 582126 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 394-83 chr12 48280844 48281091 + 2 NA Intergenic Intergenic -48013 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 308-40 chr1 219625517 219625747 + 2 NA Intergenic Intergenic -12487 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 353-381 chr4 97300588 97300899 + 2 NA Intergenic L1MA4|LINE|L1 -66183 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 379-10 chr1 71452441 71452724 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 371258 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 368-73 chr11 25677609 25677969 + 2 NA Intergenic L1MA4|LINE|L1 -511334 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 344-89 chr11 111419917 111420114 + 2 NA Intergenic Intergenic -1829 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 303-26 chr1 236951063 236951320 + 2 NA Intergenic Intergenic 53250 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 307-18 chr1 114682308 114682548 + 2 NA intron (NM_001172626, intron 4 of 14) intron (NM_001172626, intron 4 of 14) -12379 NM_198459 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 274-246 chr21 27489873 27490104 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -232391 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 148-39 chr19 43455589 43455690 + 2 NA Intergenic L1ME4b|LINE|L1 9969 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 512-223 chr5 106592227 106592678 + 2 NA Intergenic L1MC3|LINE|L1 418562 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 456-296 chr7 26938254 26938569 + 2 NA Intergenic Intergenic -73821 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 428-122 chr2 51358220 51358528 + 2 NA intron (NR_135237, intron 3 of 10) L1MEf|LINE|L1 325773 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 312-447 chr6 48707704 48707929 + 2 NA Intergenic L1MC2|LINE|L1 -639127 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 321-345 chr21 26609221 26609523 + 2 NA Intergenic Intergenic -36086 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 197-226 chr9 74040899 74041045 + 2 NA Intergenic Intergenic -330559 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 159-69 chr4 112722970 112723117 + 2 NA intron (NM_001354269, intron 1 of 43) intron (NM_001354269, intron 1 of 43) 17025 NM_001354269 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 152-31 chr15 71574766 71574876 + 2 NA intron (NM_001286429, intron 1 of 11) MLT1H|LTR|ERVL-MaLR 27585 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 537-25 chr10 63880638 63881054 + 2 NA Intergenic L1MA9|LINE|L1 -358956 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 365-109 chr13 55694795 55695110 + 2 NA Intergenic L1M1|LINE|L1 520498 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 216-28 chr1 214007326 214007510 + 2 NA intron (NM_001270616, intron 3 of 4) Tigger19a|DNA|TcMar-Tigger 18885 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 177-95 chr21 14219728 14219878 + 2 NA intron (NR_135310, intron 2 of 4) intron (NR_135310, intron 2 of 4) 3646 NR_135308 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 378-344 chr5 106381934 106382176 + 2 NA Intergenic Intergenic 628959 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 621-41 chr15 70367223 70367795 + 2 NA Intergenic L1MA6|LINE|L1 138419 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 318-187 chr15 89929748 89929918 + 2 NA Intergenic AluSp|SINE|Alu -16881 NM_182616 348110 Hs.6734 NM_182616 ENSG00000242498 ARPIN C15orf38 actin related protein 2/3 complex inhibitor protein-coding 367-242 chr2 234297280 234297576 + 2 NA Intergenic Intergenic 157167 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 340-20 chr1 115860087 115860352 + 2 NA Intergenic L1MCc|LINE|L1 -19093 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 355-82 chr11 24733811 24734110 + 2 NA intron (NM_001009909, intron 3 of 11) intron (NM_001009909, intron 3 of 11) 236907 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 282-331 chr4 35785700 35785887 + 2 NA Intergenic Intergenic 458146 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 566-136 chr3 182113199 182113572 + 2 NA Intergenic Intergenic 161021 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 478-206 chr4 46579766 46580195 + 2 NA Intergenic Intergenic -189852 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 595-81 chr2 63245276 63245716 + 2 NA intron (NR_148705, intron 13 of 16) Tigger4|DNA|TcMar-Tigger -125954 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 243-178 chr18 29377668 29377857 + 2 NA Intergenic Intergenic -921148 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 442-239 chr5 124795289 124795709 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -50387 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 755-53 chr5 83748877 83749474 + 2 NA Intergenic L1M4|LINE|L1 -28320 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 494-166 chr3 25980198 25980522 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -106665 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 321-105 chr11 94358511 94358819 + 2 NA Intergenic AluJb|SINE|Alu 42754 NM_016540 10888 Hs.272385 NM_016540 ENSG00000123901 GPR83 GIR|GPR72 G protein-coupled receptor 83 protein-coding 244-158 chr2 61807313 61807502 + 2 NA Intergenic Intergenic 46653 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 273-318 chr4 40536626 40536864 + 2 NA intron (NM_001098634, intron 2 of 6) AluSx1|SINE|Alu -20760 NM_019027 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 202-81 chr15 25600717 25600867 + 2 NA Intergenic Intergenic -161736 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 177-77 chr2 119641552 119641683 + 2 NA intron (NR_073132, intron 22 of 24) MIRb|SINE|MIR -37550 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 416-25 chr1 225077082 225077364 + 2 NA intron (NM_001367479, intron 17 of 85) L1M5|LINE|L1 147548 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 228-229 chr3 180469786 180469973 + 2 NA Intergenic L1MA7|LINE|L1 55706 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 632-22 chr12 48471700 48472173 + 2 NA promoter-TSS (NM_012404) promoter-TSS (NM_012404) -729 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 239-439 chr9 116104648 116104879 + 2 NA Intergenic Intergenic -49028 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 684 chr1 34541463 34541981 + 2 NA Intergenic L1MB8|LINE|L1 127972 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 161-35 chr17 30854634 30854754 + 2 NA intron (NM_024857, intron 6 of 22) intron (NM_024857, intron 6 of 22) 22728 NM_024857 79915 Hs.528902 NM_024857 ENSG00000176208 ATAD5 C17orf41|ELG1|FRAG1 ATPase family AAA domain containing 5 protein-coding 216-232 chr3 117048184 117048359 + 2 NA Intergenic Intergenic 126840 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 283-309 chr4 15286635 15286894 + 2 NA intron (NR_125911, intron 1 of 5) L1MC|LINE|L1 -53224 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 469-258 chr7 21876878 21877201 + 2 NA intron (NM_001277115, intron 74 of 81) intron (NM_001277115, intron 74 of 81) 68860 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 642-72 chr3 56715790 56716297 + 2 NA Intergenic L1MEc|LINE|L1 -32778 NM_001365636 23272 Hs.116877 NM_015224 ENSG00000163946 TASOR C3orf63|FAM208A|RAP140|TASOR1|se89-1 transcription activation suppressor protein-coding 258-160 chr17 54363030 54363278 + 2 NA Intergenic Intergenic -537537 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 252-360 chr6 38985246 38985459 + 2 NA intron (NM_001371, intron 86 of 91) intron (NM_001371, intron 86 of 91) -32245 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 586-69 chr2 26431270 26431673 + 2 NA intron (NM_145038, intron 6 of 16) intron (NM_145038, intron 6 of 16) 29551 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 274-57 chr10 111225889 111226110 + 2 NA Intergenic Intergenic 111708 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 407-326 chr8 120006954 120007231 + 2 NA intron (NM_022783, intron 7 of 8) intron (NM_022783, intron 7 of 8) -118010 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 341-70 chr10 88591081 88591363 + 2 NA intron (NM_001010939, intron 3 of 10) L2b|LINE|L2 4460 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 397-184 chr20 18739287 18739606 + 2 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) -40738 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 255-235 chr20 57631009 57631242 + 2 NA Intergenic L1ME4a|LINE|L1 -10699 NR_136660 81030 Hs.302123 NM_030776 ENSG00000124256 ZBP1 C20orf183|DAI|DLM-1|DLM1 Z-DNA binding protein 1 protein-coding 205-188 chr3 108722922 108723075 + 2 NA Intergenic L2c|LINE|L2 34285 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 350-30 chr1 199175666 199175990 + 2 NA intron (NR_147896, intron 3 of 3) L1MB8|LINE|L1 27230 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 248-329 chr5 125016764 125016961 + 2 NA Intergenic Intergenic -19969 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 249-357 chr6 74972240 74972418 + 2 NA Intergenic Intergenic 156453 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 381-182 chr2 12800125 12800439 + 2 NA Intergenic L1PREC2|LINE|L1 62915 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 242-348 chr6 91899531 91899675 + 2 NA Intergenic Intergenic -209175 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 610-52 chr14 82228080 82228519 + 2 NA Intergenic Intergenic -414333 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 168-91 chr5 89321963 89322071 + 2 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -417912 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 224-104 chr16 21248857 21249048 + 2 NA intron (NM_145865, intron 1 of 1) MER63D|DNA|hAT-Blackjack 15253 NM_145865 257629 Hs.115959 NM_145865 ENSG00000175311 ANKS4B HARP ankyrin repeat and sterile alpha motif domain containing 4B protein-coding 365-8 chr1 72625995 72626211 + 2 NA Intergenic MIR|SINE|MIR -343564 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 275-198 chr2 78028626 78028787 + 2 NA intron (NR_110288, intron 1 of 3) L1MC1|LINE|L1 -60024 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 114-28 chr2 55922192 55922266 + 2 NA intron (NM_001039349, intron 2 of 10) intron (NM_001039349, intron 2 of 10) 1553 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 296-300 chr3 99162232 99162456 + 2 NA Intergenic L1MEf|LINE|L1 -260649 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 399-82 chr14 34411025 34411268 + 2 NA Intergenic L1M3c|LINE|L1 51094 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 449-151 chr21 20539050 20539349 + 2 NA Intergenic Intergenic 263909 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 265-251 chr3 178466920 178467082 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 47800 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 355-399 chr5 45193828 45194115 + 2 NA Intergenic Intergenic 385024 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 306-29 chr1 162043886 162044045 + 2 NA Intergenic L1MEc|LINE|L1 -19500 NM_001297713 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 433-272 chr8 36066386 36066680 + 2 NA Intergenic Intergenic -356213 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 374-245 chr3 64994316 64994675 + 2 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -306495 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 399-292 chr7 122218589 122218870 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -74480 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 496-177 chr3 79227798 79228151 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -183753 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 291-320 chr4 59927326 59927571 + 2 NA Intergenic L1MA2|LINE|L1 913875 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 363-46 chr10 38589330 38589534 + 2 NA Intergenic Intergenic -107164 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 703-37 chr17 29917565 29918013 + 2 NA intron (NM_001282129, intron 1 of 15) AluSc8|SINE|Alu -12114 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 434-97 chr15 95031414 95031671 + 2 NA Intergenic L1MB3|LINE|L1 176179 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 267-334 chr5 81013876 81014030 + 2 NA intron (NM_006909, intron 1 of 26) L1ME3G|LINE|L1 -53046 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 164-65 chr20 57166103 57166207 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -47541 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 300-398 chr6 98143419 98143581 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 118969 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 636-116 chr5 117384886 117385508 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -30315 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 304-568 chrX 76190123 76190313 + 2 NA Intergenic L1MA10|LINE|L1 17156 NM_016500 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 244-189 chr2 228691674 228691886 + 2 NA Intergenic L1MEh|LINE|L1 -80385 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 372-258 chr2 134224533 134224780 + 2 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) -29416 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 249-435 chr8 134594167 134594396 + 2 NA intron (NM_020863, intron 7 of 15) intron (NM_020863, intron 7 of 15) -3790 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 236-324 chr7 40270436 40270611 + 2 NA intron (NM_001193312, intron 7 of 12) L1M4|LINE|L1 135547 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 363-55 chr10 63764739 63764936 + 2 NA Intergenic MER66B|LTR|ERV1 -242947 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 194-229 chr9 113781985 113782142 + 2 NA Intergenic Intergenic -94219 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 315-190 chr17 33974667 33974855 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 182045 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 664-24 chr11 27922018 27922407 + 2 NA Intergenic L1MD3|LINE|L1 -134603 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 357-347 chr5 77917502 77917831 + 2 NA intron (NR_105012, intron 1 of 1) intron (NR_105012, intron 1 of 1) 33010 NR_105012 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 319-414 chr5 72468516 72468814 + 2 NA intron (NM_152625, intron 1 of 4) intron (NM_152625, intron 1 of 4) 38745 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 209-78 chr12 116347621 116347747 + 2 NA Intergenic L1ME4a|LINE|L1 -70498 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 257-126 chr15 61515782 61515970 + 2 NA Intergenic Intergenic -214042 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 625-118 chr8 120357390 120357789 + 2 NA intron (NM_021110, intron 45 of 47) MLT1F1|LTR|ERVL-MaLR 87561 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 332-20 chr1 108993133 108993402 + 2 NA intron (NM_014969, intron 8 of 14) AluSx4|SINE|Alu -29768 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 198-70 chr14 78725520 78725664 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 321873 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 275-90 chr12 125951621 125951890 + 2 NA Intergenic AluJb|SINE|Alu 31619 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 318-585 chrX 15520503 15520662 + 2 NA intron (NM_203281, intron 6 of 18) intron (NM_203281, intron 6 of 18) 13274 NM_001721 660 Hs.495731 NM_001721 ENSG00000102010 BMX ETK|PSCTK2|PSCTK3 BMX non-receptor tyrosine kinase protein-coding 297-498 chr8 137122776 137122927 + 2 NA Intergenic Intergenic 290737 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 294-449 chr7 141068113 141068278 + 2 NA Intergenic AluSz6|SINE|Alu -5869 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 195-120 chr2 186336367 186336473 + 2 NA Intergenic Intergenic -149840 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 249-176 chr19 40008959 40009159 + 2 NA intron (NM_178544, intron 6 of 6) L2a|LINE|L2 11999 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 318-314 chr20 11102605 11102854 + 2 NA Intergenic L1PA16|LINE|L1 76185 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 192-220 chr9 75670446 75670613 + 2 NA Intergenic Intergenic -220115 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 232-107 chr14 87362778 87362956 + 2 NA Intergenic Intergenic 292427 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 435-248 chr8 107845940 107846339 + 2 NA Intergenic L5|LINE|RTE-X 235800 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 254-449 chrX 85834252 85834396 + 2 NA Intergenic Intergenic -1456 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 601-158 chr9 136876516 136876951 + 2 NA Intergenic Intergenic -9783 NM_021138 7186 Hs.522506 NM_021138 ENSG00000127191 TRAF2 MGC:45012|RNF117|TRAP|TRAP3 TNF receptor associated factor 2 protein-coding 282-466 chr8 124979982 124980141 + 2 NA TTS (NM_152412) TTS (NM_152412) 6766 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 231-138 chr18 65254782 65254963 + 2 NA Intergenic Intergenic -495380 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 265-236 chr3 28087352 28087547 + 2 NA Intergenic Intergenic -154170 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 280-417 chr8 110174643 110174848 + 2 NA Intergenic Intergenic -198974 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 352-70 chr11 13403325 13403519 + 2 NA intron (NM_032320, intron 7 of 8) intron (NM_032320, intron 7 of 8) 36857 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 398 chr1 33753704 33754012 + 2 NA intron (NM_052896, intron 13 of 69) MSTB-int|LTR|ERVL-MaLR -106617 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 732-48 chr2 143234537 143235164 + 2 NA intron (NM_018460, intron 5 of 13) intron (NM_018460, intron 5 of 13) 105431 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 336-140 chr12 93995486 93995793 + 2 NA Intergenic Intergenic -52033 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 284-108 chr13 90578025 90578193 + 2 NA Intergenic Intergenic 84821 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 373-41 chr10 5493720 5493976 + 2 NA Intergenic Intergenic 5722 NM_017422 51806 Hs.180142 NM_017422 ENSG00000178372 CALML5 CLSP calmodulin like 5 protein-coding 334-86 chr11 43858238 43858510 + 2 NA Intergenic Intergenic -22457 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 417-209 chr4 181312847 181313082 + 2 NA Intergenic L2b|LINE|L2 -47935 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 729-12 chr10 128246145 128246675 + 2 NA Intergenic MIR3|SINE|MIR -39540 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 389-191 chr2 176605899 176606244 + 2 NA Intergenic LTR16E2|LTR|ERVL -5019 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 180-82 chr2 58820267 58820375 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 299568 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 411-61 chr11 113392783 113393039 + 2 NA intron (NM_178510, intron 1 of 7) intron (NM_178510, intron 1 of 7) 5132 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 509-90 chr17 51231403 51231875 + 2 NA intron (NM_017643, intron 2 of 16) Charlie17|DNA|hAT-Charlie 28410 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 274-56 chr10 109349925 109350193 + 2 NA Intergenic L1PA16|LINE|L1 573187 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 336-528 chr7 108204414 108204662 + 2 NA intron (NM_001371137, intron 10 of 25) intron (NM_001371137, intron 10 of 25) 38847 NM_001371182 346-531 chr9 109674483 109674726 + 2 NA intron (NM_001037293, intron 1 of 6) intron (NM_001037293, intron 1 of 6) 33816 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 290-269 chr3 11073544 11073806 + 2 NA Intergenic LOR1-int|LTR|ERV1 -54451 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 589-66 chr2 57117149 57117650 + 2 NA Intergenic Intergenic -790252 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 354-495 chr9 85414628 85414885 + 2 NA Intergenic Intergenic 327273 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 114-62 chr8 84334839 84334936 + 2 NA intron (NM_001354320, intron 2 of 9) LTR78|LTR|ERV1 -80597 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 379-70 chr12 37301632 37301911 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1015003 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 304-238 chr2 14047937 14048232 + 2 NA Intergenic L1MEc|LINE|L1 352874 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 414-235 chr4 66103223 66103487 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -173469 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 570-28 chr10 75347111 75347490 + 2 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) 50917 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 260-267 chr3 58772259 58772471 + 2 NA intron (NM_001351532, intron 14 of 14) L1ME4b|LINE|L1 -52106 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 294-473 chr8 109810609 109810803 + 2 NA Intergenic Intergenic -118915 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 307-15 chr1 96205401 96205593 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 168628 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 326-420 chr5 95061098 95061403 + 2 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) 20616 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 473-240 chr6 67517312 67517636 + 2 NA Intergenic Intergenic -537877 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 423-27 chr10 59162000 59162372 + 2 NA Intergenic Intergenic 14278 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 478-8 chr1 92204729 92205110 + 2 NA Intergenic Intergenic -12996 NM_001012425 388649 Hs.558823 NM_001012425 ENSG00000203910 C1orf146 - chromosome 1 open reading frame 146 protein-coding 340-486 chr6 140560076 140560347 + 2 NA Intergenic (AGGCTC)n|Simple_repeat|Simple_repeat -123603 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 191-43 chr12 83604047 83604172 + 2 NA Intergenic Intergenic 916954 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 292-479 chrX 96143045 96143199 + 2 NA Intergenic L1MB4|LINE|L1 194780 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 210-292 chr8 105699314 105699466 + 2 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 361113 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 284-167 chr18 1240072 1240313 + 2 NA Intergenic Intergenic 119437 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 375-342 chr5 156377483 156377758 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 50456 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 477-193 chr3 16075603 16075920 + 2 NA Intergenic Intergenic -98919 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 248-411 chr8 118775924 118776101 + 2 NA Intergenic L1ME3A|LINE|L1 -154049 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 541-23 chr10 116448367 116448836 + 2 NA intron (NM_001011709, intron 4 of 11) AluJr4|SINE|Alu 20754 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 556-6 chr1 87728480 87728934 + 2 NA Intergenic AluSz|SINE|Alu -357052 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 410-56 chr11 71381108 71381490 + 2 NA Intergenic HAL1ME|LINE|L1 42055 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 389-386 chr9 103588719 103588988 + 2 NA Intergenic Intergenic -263820 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 370-334 chr4 35944432 35944707 + 2 NA Intergenic L1MC4|LINE|L1 299370 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 269-156 chr17 60988790 60989014 + 2 NA intron (NM_001330413, intron 14 of 25) L1MA2|LINE|L1 311051 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 700-13 chr10 85269346 85269902 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -70686 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 257-254 chr22 26584824 26585067 + 2 NA intron (NM_001362923, intron 1 of 7) intron (NM_001362923, intron 1 of 7) 5187 NM_001362923 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 247-24 chr1 196642984 196643216 + 2 NA Intergenic L1M1|LINE|L1 -8778 NM_001014975 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 783-60 chr5 37646596 37647205 + 2 NA intron (NM_001345998, intron 10 of 17) L1MA3|LINE|L1 187922 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 315-67 chr10 82977692 82977884 + 2 NA intron (NR_163253, intron 9 of 10) intron (NR_163253, intron 9 of 10) 699301 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 292-377 chr6 45517668 45517893 + 2 NA intron (NM_001015051, intron 7 of 7) intron (NM_001015051, intron 7 of 7) 95505 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 624-2 chr1 78095378 78095812 + 2 NA intron (NM_001304725, intron 3 of 5) intron (NM_001304725, intron 3 of 5) 49629 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 236-315 chr7 11982523 11982721 + 2 NA Intergenic L1M4|LINE|L1 -150424 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 542-56 chr14 51900660 51901144 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 17669 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 400-299 chr5 178869397 178869610 + 2 NA intron (NM_058230, intron 4 of 4) intron (NM_058230, intron 4 of 4) 9550 NM_058230 117608 Hs.724051 NM_058230 ENSG00000178338 ZNF354B KID2 zinc finger protein 354B protein-coding 301-487 chr9 100609095 100609364 + 2 NA Intergenic L2|LINE|L2 31150 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 266-42 chr10 65383828 65384014 + 2 NA Intergenic Intergenic -187504 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 182-44 chr13 30267300 30267426 + 2 NA intron (NM_032116, intron 3 of 10) intron (NM_032116, intron 3 of 10) 39648 NM_001014380 84056 Hs.243596 NM_032116 ENSG00000102781 KATNAL1 - katanin catalytic subunit A1 like 1 protein-coding 126-29 chr18 20972214 20972290 + 2 NA intron (NM_005406, intron 22 of 32) L2a|LINE|L2 139561 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 413-284 chr7 126087740 126088069 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -823613 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 347-32 chr1 219239873 219240073 + 2 NA Intergenic Intergenic 65004 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 467-37 chr10 121299921 121300292 + 2 NA Intergenic Intergenic 231208 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 455-246 chr6 116725242 116725651 + 2 NA intron (NM_001366306, intron 10 of 13) intron (NM_001366306, intron 10 of 13) 40273 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 149 chr1 11262635 11262778 + 2 NA promoter-TSS (NM_004958) promoter-TSS (NM_004958) -155 NM_004958 2475 Hs.338207 NM_004958 ENSG00000198793 MTOR FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS mechanistic target of rapamycin kinase protein-coding 458-279 chrX 76709637 76710019 + 2 NA intron (NR_110400, intron 1 of 3) intron (NR_110400, intron 1 of 3) 209532 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 351-353 chr4 89023696 89024041 + 2 NA intron (NM_014883, intron 2 of 23) intron (NM_014883, intron 2 of 23) 33317 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 378-383 chr6 150414724 150415092 + 2 NA Intergenic Intergenic 45896 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 558-25 chr10 98526016 98526446 + 2 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -79268 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 622-64 chr2 99815829 99816268 + 2 NA intron (NM_001025108, intron 7 of 23) L1MCa|LINE|L1 289535 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 278-342 chr5 78397803 78398055 + 2 NA intron (NR_110885, intron 2 of 7) L1MB3|LINE|L1 37312 NR_110885 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 358-458 chr7 141124914 141125142 + 2 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 50964 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 308-303 chr3 106242089 106242323 + 2 NA Intergenic Intergenic -372805 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 361-319 chr4 58848389 58848741 + 2 NA Intergenic AluJo|SINE|Alu -135717 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 291-406 chr7 52167532 52167701 + 2 NA Intergenic Intergenic -774360 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 326-298 chr20 49756623 49756848 + 2 NA Intergenic Intergenic -42857 NM_004776 9334 Hs.370487 NM_004776 ENSG00000158470 B4GALT5 B4Gal-T5|BETA4-GALT-IV|beta4Gal-T5|beta4GalT-V|gt-V beta-1,4-galactosyltransferase 5 protein-coding 343-552 chr8 116991835 116992054 + 2 NA intron (NM_001172811, intron 2 of 9) UCON18|Unknown|Unknown 40969 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 363-403 chr7 11558096 11558455 + 2 NA intron (NM_015204, intron 4 of 26) L1MDa|LINE|L1 273923 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 197-147 chr4 23600199 23600330 + 2 NA Intergenic LTR16A|LTR|ERVL 281028 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 423-121 chr2 5076037 5076426 + 2 NA Intergenic Intergenic -420009 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 256-34 chr10 17948873 17949051 + 2 NA Intergenic MER49|LTR|ERV1 -2877 NM_001282734 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 328-632 chrX 86418463 86418758 + 2 NA intron (NM_001139515, intron 2 of 11) THE1B-int|LTR|ERVL-MaLR 155642 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 330-397 chr4 172883353 172883642 + 2 NA intron (NM_001034845, intron 8 of 12) MSTB|LTR|ERVL-MaLR -156619 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 370-61 chr10 90590274 90590546 + 2 NA Intergenic Intergenic -49605 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 313-201 chr17 52510202 52510442 + 2 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 119800 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 220-60 chr10 115777310 115777483 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 417393 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 284-344 chr6 40640090 40640273 + 2 NA Intergenic Intergenic -52817 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 282-128 chr14 60326670 60326870 + 2 NA Intergenic Intergenic 3574 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 363-432 chr8 49453862 49454089 + 2 NA Intergenic (TTCTAT)n|Simple_repeat|Simple_repeat 58205 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 400-86 chr14 34206889 34207236 + 2 NA Intergenic Intergenic 255178 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 465-7 chr1 67964636 67964998 + 2 NA intron (NR_040077, intron 1 of 9) MSTA|LTR|ERVL-MaLR 86814 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 358-412 chr6 98133972 98134254 + 2 NA Intergenic Intergenic 109582 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 353-144 chr14 61964444 61964684 + 2 NA intron (NM_001367663, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 36869 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 239-107 chr14 65747101 65747325 + 2 NA Intergenic MER102b|DNA|hAT-Charlie 276111 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 433-143 chr2 170261989 170262246 + 2 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 83970 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 352-59 chr10 108514620 108514803 + 2 NA Intergenic L1MC3|LINE|L1 -445418 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 257-381 chr7 37798509 37798701 + 2 NA Intergenic Intergenic -49992 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 201-36 chr10 114875332 114875503 + 2 NA intron (NM_001135051, intron 16 of 16) AluSx1|SINE|Alu 53637 NM_001135051 57700 Hs.192619 NM_020940 ENSG00000151553 FAM160B1 KIAA1600|bA106M7.3 family with sequence similarity 160 member B1 protein-coding 229-288 chr4 179678642 179678865 + 2 NA Intergenic L1MEf|LINE|L1 1480396 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 369-231 chr2 226176085 226176373 + 2 NA intron (NR_046102, intron 5 of 6) MIRb|SINE|MIR 33435 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 305-69 chr10 75569221 75569509 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 16907 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 300-395 chr6 86953465 86953660 + 2 NA intron (NM_000865, intron 1 of 1) MLT1H|LTR|ERVL-MaLR 16034 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 187-53 chr15 59745382 59745560 + 2 NA Intergenic L2|LINE|L2 -56151 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 484 chr1 27708323 27708677 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -17461 NM_001143915 199870 Hs.469359 NM_152660 ENSG00000009780 FAM76A - family with sequence similarity 76 member A protein-coding 636-20 chr11 44042687 44043254 + 2 NA Intergenic AluJb|SINE|Alu -5011 NM_001363113 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 320-12 chr1 72947885 72948070 + 2 NA Intergenic Intergenic -358193 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 471-101 chr17 11959191 11959513 + 2 NA intron (NM_001372, intron 67 of 68) intron (NM_001372, intron 67 of 68) 38020 NM_144680 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 332-503 chr7 109389493 109389729 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -505024 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 197-201 chr8 61072959 61073117 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie -105290 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 307-348 chr4 101840311 101840491 + 2 NA intron (NM_017935, intron 2 of 16) MER9a3|LTR|ERVK 26559 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 378-388 chr7 3937303 3937659 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -192204 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 607-61 chr18 3727290 3727796 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 117815 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 338-576 chr8 143176620 143176894 + 2 NA Intergenic (TTGT)n|Simple_repeat|Simple_repeat -16103 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 222-363 chr8 59296014 59296201 + 2 NA Intergenic Intergenic 176897 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 257-456 chrX 95042870 95043033 + 2 NA Intergenic L1M2|LINE|L1 20275 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 214-156 chr2 43787532 43787709 + 2 NA intron (NM_016008, intron 4 of 12) intron (NM_016008, intron 4 of 12) 13581 NM_016008 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 272-475 chr9 74720853 74721045 + 2 NA Intergenic Intergenic 105415 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 347-570 chrX 145795333 145795517 + 2 NA Intergenic Intergenic -22404 NM_001144003 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 325-447 chr5 80793586 80793765 + 2 NA intron (NM_002439, intron 19 of 23) L2b|LINE|L2 -138692 NM_000791 1719 Hs.592364 NM_000791 ENSG00000228716 DHFR DHFRP1|DYR dihydrofolate reductase protein-coding 581-146 chr5 178885211 178885659 + 2 NA TTS (NM_058230) TTS (NM_058230) -10478 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 396-17 chr1 105787522 105787834 + 2 NA Intergenic Intergenic -168743 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 259-82 chr12 5141533 5141788 + 2 NA Intergenic L1MC5a|LINE|L1 97781 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 161-85 chr5 45255605 45255712 + 2 NA 3' UTR (NM_021072, exon 8 of 8) 3' UTR (NM_021072, exon 8 of 8) 440722 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 142-56 chr4 71308314 71308411 + 2 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -30691 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 459-80 chr14 51261842 51262287 + 2 NA Intergenic AluJo|SINE|Alu 21817 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 234-321 chr5 129939524 129939658 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 35126 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 389-309 chr6 19514125 19514334 + 2 NA Intergenic L1MB2|LINE|L1 64408 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 172-58 chr2 53836707 53836855 + 2 NA intron (NM_001164165, intron 1 of 9) L1M5|LINE|L1 12424 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 217-56 chr11 8496200 8496337 + 2 NA intron (NM_001352388, intron 1 of 14) intron (NM_001352388, intron 1 of 14) 97708 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 343-507 chr7 46778691 46778928 + 2 NA Intergenic L1M1|LINE|L1 -81687 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 277-88 chr12 13759447 13759680 + 2 NA intron (NM_000834, intron 2 of 12) L2a|LINE|L2 220793 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 1242-14 chr8 88344607 88345502 + 2 NA Intergenic L1PA11|LINE|L1 -17571 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 224-161 chr2 178602915 178603117 + 2 NA intron (NM_001256850, intron 232 of 312) intron (NM_001256850, intron 232 of 312) 79825 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 281-368 chr5 116204510 116204744 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) -51116 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 302 chr1 18026108 18026306 + 2 NA Intergenic L1ME3B|LINE|L1 -39450 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 314-198 chr15 86415928 86416197 + 2 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -99094 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 336-461 chr5 106855661 106855836 + 2 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 155266 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 327-62 chr10 85860662 85860926 + 2 NA intron (NM_017551, intron 6 of 15) intron (NM_017551, intron 6 of 15) 283063 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 468-30 chr10 44026462 44026773 + 2 NA Intergenic L1MEd|LINE|L1 114215 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 173-140 chr8 85538201 85538317 + 2 NA Intergenic Intergenic -73344 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 272-18 chr1 168870141 168870409 + 2 NA Intergenic Intergenic 83334 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 322-247 chr2 66343374 66343596 + 2 NA Intergenic Intergenic 14843 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 343-29 chr1 166786445 166786668 + 2 NA Intergenic Intergenic -52919 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 333-256 chr2 115322122 115322404 + 2 NA intron (NM_001321909, intron 2 of 24) L1MD3|LINE|L1 13026 NM_020868 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 452-221 chr5 153091500 153091760 + 2 NA Intergenic Intergenic -119281 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 261-372 chr8 54780002 54780181 + 2 NA Intergenic Intergenic 163995 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 424-118 chr19 53696491 53696755 + 2 NA promoter-TSS (NR_030192) promoter-TSS (NR_030192) -910 NR_030192 574470 NR_030192 ENSG00000207711 MIR525 MIRN525|hsa-mir-525 microRNA 525 ncRNA 275-275 chr4 120592589 120592824 + 2 NA Intergenic L2b|LINE|L2 330160 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 285-228 chr2 190402826 190403001 + 2 NA Intergenic L1M5|LINE|L1 -5442 NM_017694 54842 Hs.418581 NM_017694 ENSG00000151690 MFSD6 MMR2|hMMR2 major facilitator superfamily domain containing 6 protein-coding 228-32 chr10 17327051 17327267 + 2 NA intron (NM_001004470, intron 5 of 7) intron (NM_001004470, intron 5 of 7) -59777 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 340-258 chr2 77444395 77444640 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 77859 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 539-198 chr7 113477100 113477439 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -358687 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 384-109 chr14 62316698 62316935 + 2 NA Intergenic Intergenic -176843 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 155-5 chr1 68327668 68327809 + 2 NA Intergenic Intergenic -95192 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 560-72 chr18 9236604 9237039 + 2 NA intron (NM_001204056, intron 7 of 11) L1MEj|LINE|L1 -97952 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 428-291 chr8 57474138 57474485 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 130524 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 295-318 chr4 5566124 5566378 + 2 NA intron (NM_147127, intron 20 of 21) intron (NM_147127, intron 20 of 21) 41095 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 382-356 chr6 77271549 77271788 + 2 NA Intergenic Intergenic 192354 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 360-411 chr6 76036242 76036550 + 2 NA intron (NM_001282368, intron 1 of 15) intron (NM_001282368, intron 1 of 15) 36266 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 362-139 chr13 106623774 106624021 + 2 NA intron (NR_051977, intron 1 of 3) L3|LINE|CR1 6087 NR_051977 283483 Hs.651365 NR_051977 ENSG00000272274 LINC00551 - long intergenic non-protein coding RNA 551 ncRNA 332-593 chrX 93557084 93557261 + 2 NA Intergenic L1PA17|LINE|L1 116406 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 315-288 chr21 22352129 22352304 + 2 NA Intergenic LTR8|LTR|ERV1 253599 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 287-368 chr6 161602966 161603175 + 2 NA intron (NM_004562, intron 7 of 11) MIRc|SINE|MIR 132093 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 445-193 chr4 38403047 38403294 + 2 NA Intergenic L1ME1|LINE|L1 36256 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 282-448 chr8 81274063 81274339 + 2 NA Intergenic Intergenic -6335 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 857-16 chr12 10495371 10496003 + 2 NA Intergenic Intergenic -10206 NM_001357734 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 237-172 chr2 52946469 52946694 + 2 NA Intergenic MER33|DNA|hAT-Charlie -243966 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 315-370 chr5 29286455 29286620 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 109439 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 257-293 chr4 38746948 38747139 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 35947 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 493-239 chr5 27243050 27243453 + 2 NA Intergenic L1MC3|LINE|L1 -204665 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 369-67 chr11 97070945 97071255 + 2 NA Intergenic L1PA11|LINE|L1 562675 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 247-347 chr5 158191919 158192140 + 2 NA Intergenic HAL1M8|LINE|L1 217744 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 189-157 chr5 34490240 34490427 + 2 NA Intergenic Intergenic -165995 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 287-205 chr2 126424044 126424299 + 2 NA Intergenic L1PA15|LINE|L1 -231764 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 508-123 chr2 218910307 218910680 + 2 NA intron (NR_110238, intron 3 of 4) MIRc|SINE|MIR 20144 NR_110238 101928537 Hs.611129 NR_110238 ENSG00000228135 LINC01494 - long intergenic non-protein coding RNA 1494 ncRNA 361-214 chr2 59056598 59056842 + 2 NA intron (NR_033873, intron 12 of 13) intron (NR_033873, intron 12 of 13) -160988 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 280-32 chr1 208696360 208696626 + 2 NA Intergenic L1MEc|LINE|L1 -32195 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 415-243 chr6 123151012 123151422 + 2 NA Intergenic Intergenic 154982 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 250-346 chr5 72246604 72246785 + 2 NA intron (NM_001286748, intron 4 of 11) intron (NM_001286748, intron 4 of 11) 66907 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 359-203 chr19 12071808 12072002 + 2 NA intron (NR_134326, intron 1 of 2) AluSg7|SINE|Alu 7174 NM_001136501 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 426-178 chr3 35800225 35800645 + 2 NA Intergenic Intergenic 55959 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 231-3 chr1 24489626 24489815 + 2 NA Intergenic L1MB5|LINE|L1 -12624 NM_001251979 11123 Hs.656799 NM_013441 ENSG00000117602 RCAN3 DSCR1L2|MCIP3|RCN3|hRCN3 RCAN family member 3 protein-coding 233-34 chr10 44334226 44334440 + 2 NA Intergenic Intergenic 41583 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 622-26 chr13 54589104 54589508 + 2 NA Intergenic L2b|LINE|L2 -277258 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 235-392 chr9 81417048 81417259 + 2 NA Intergenic Intergenic 272382 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 235-196 chr2 219970029 219970170 + 2 NA Intergenic L1ME2|LINE|L1 -63534 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 281-183 chr19 27384772 27385004 + 2 NA Intergenic ALR/Alpha|Satellite|centr -408543 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 204-92 chr14 80676588 80676746 + 2 NA intron (NM_152446, intron 19 of 24) L1M5|LINE|L1 265071 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 258-189 chr2 78838216 78838428 + 2 NA Intergenic Intergenic -187380 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 510-87 chr15 58511964 58512349 + 2 NA intron (NM_000236, intron 1 of 8) AluSx|SINE|Alu -13421 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 114-33 chr21 19661119 19661178 + 2 NA Intergenic Intergenic 238607 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 210-71 chr14 43072417 43072577 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 1434786 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 225-126 chr17 54279955 54280131 + 2 NA Intergenic Intergenic 457116 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 361-425 chr7 124944128 124944366 + 2 NA intron (NR_125719, intron 2 of 7) MLT1K|LTR|ERVL-MaLR -14264 NM_001042594 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 583-104 chr21 27324292 27324672 + 2 NA Intergenic Intergenic -357394 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 440-66 chr14 44757101 44757452 + 2 NA Intergenic L2c|LINE|L2 41850 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 385-59 chr12 4606903 4607218 + 2 NA intron (NM_001371301, intron 11 of 14) intron (NM_001371301, intron 11 of 14) 2197 NM_001282285 8798 Hs.439530 NM_003845 ENSG00000010219 DYRK4 - dual specificity tyrosine phosphorylation regulated kinase 4 protein-coding 261-237 chr3 55314682 55314868 + 2 NA Intergenic Intergenic 136603 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 341-266 chr2 141458438 141458638 + 2 NA intron (NM_018557, intron 3 of 90) intron (NM_018557, intron 3 of 90) 673163 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 154-34 chr14 79881186 79881292 + 2 NA Intergenic Intergenic -330180 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 234-28 chr10 20093209 20093422 + 2 NA intron (NM_032812, intron 4 of 13) (AATATT)n|Simple_repeat|Simple_repeat 276883 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 165-54 chr2 106923288 106923416 + 2 NA Intergenic L1MB2|LINE|L1 -36243 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 200-153 chr20 14041885 14042072 + 2 NA intron (NM_001351663, intron 2 of 17) L1M6B|LINE|L1 46462 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 555-200 chr8 64683399 64683947 + 2 NA intron (NM_004820, intron 1 of 5) L1MA1|LINE|L1 -101781 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 341-440 chr5 105267280 105267586 + 2 NA Intergenic Intergenic 167959 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 121-9 chr13 114242390 114242474 + 2 NA intron (NM_001330104, intron 5 of 16) intron (NM_001330104, intron 5 of 16) -2073 NR_049839 100847035 NR_049839 ENSG00000264539 MIR548AR - microRNA 548ar ncRNA 583-69 chr17 48681610 48682131 + 2 NA Intergenic AluJr|SINE|Alu 40648 NM_032391 84366 Hs.116467 NM_032391 ENSG00000159182 PRAC1 C17orf92|PRAC PRAC1 small nuclear protein protein-coding 549-84 chr18 7877080 7877580 + 2 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 310014 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 398-245 chr4 107778141 107778425 + 2 NA Intergenic Intergenic -46282 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 280-151 chr16 62946865 62947070 + 2 NA Intergenic Intergenic -910529 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 378-32 chr1 191979849 191980144 + 2 NA Intergenic L1MA4A|LINE|L1 -178466 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 569-155 chr6 64418598 64419070 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 611998 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 404-343 chr9 29683846 29684160 + 2 NA Intergenic Intergenic -470402 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 436-31 chr10 36338463 36338801 + 2 NA Intergenic MIR|SINE|MIR 560330 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 385-65 chr12 26370872 26371151 + 2 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 175438 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 127-77 chr8 25300626 25300715 + 2 NA intron (NM_024940, intron 9 of 51) intron (NM_024940, intron 9 of 51) -44732 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 250-31 chr10 15777659 15777864 + 2 NA TTS (NM_001318330) TTS (NM_001318330) -57426 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 260-407 chr7 47018667 47018905 + 2 NA Intergenic L1M5|LINE|L1 -321664 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 324-181 chr15 59560961 59561277 + 2 NA Intergenic AluSz|SINE|Alu -50664 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 266-168 chr2 8394703 8394917 + 2 NA Intergenic Intergenic -66391 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 357-224 chr2 177856560 177856898 + 2 NA intron (NM_001077197, intron 6 of 20) L1MB7|LINE|L1 32027 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 512-13 chr1 184177582 184178024 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 126073 NM_001300766 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 253-62 chr10 120158208 120158437 + 2 NA Intergenic Intergenic 196901 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 574-190 chr8 136808100 136808597 + 2 NA intron (NR_147196, intron 4 of 5) L2b|LINE|L2 277550 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 349-294 chr20 45672528 45672832 + 2 NA Intergenic L1PA15|LINE|L1 -2441 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 226-169 chr2 104726674 104726836 + 2 NA Intergenic Intergenic 30964 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 830-48 chr7 47169706 47170258 + 2 NA Intergenic Intergenic 294821 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 347-336 chr4 32297187 32297500 + 2 NA Intergenic L1ME2|LINE|L1 -53695 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 427-32 chr10 108872697 108872984 + 2 NA Intergenic Intergenic -803547 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 240-228 chr2 129360857 129361021 + 2 NA Intergenic Intergenic -87048 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 329-299 chr2 180297578 180297755 + 2 NA Intergenic L1MC|LINE|L1 -290369 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 288-246 chr22 34730334 34730574 + 2 NA Intergenic Intergenic 267462 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 332-159 chr14 98303734 98303964 + 2 NA Intergenic L1P4|LINE|L1 -325725 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 228-6 chr1 56770869 56771027 + 2 NA intron (NM_001004303, intron 4 of 19) L1ME3Cz|LINE|L1 48456 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 626-37 chr13 45044588 45045160 + 2 NA Intergenic AluSz|SINE|Alu 55336 NM_001316952 55425 Hs.731811 NM_018559 ENSG00000133114 GPALPP1 AD029|KIAA1704|LSR7|bA245H20.2 GPALPP motifs containing 1 protein-coding 242-431 chr9 35220222 35220389 + 2 NA intron (NM_006377, intron 1 of 38) L1MA3|LINE|L1 58296 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 353-482 chr7 33159812 33160153 + 2 NA intron (NM_198428, intron 4 of 22) MER57-int|LTR|ERV1 30418 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 291-134 chr14 71893855 71894058 + 2 NA Intergenic LTR51|LTR|ERV1 -38215 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 362-426 chr8 40194875 40195082 + 2 NA Intergenic Intergenic 41496 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 213-31 chr10 27879123 27879290 + 2 NA intron (NM_001290021, intron 10 of 13) intron (NM_001290021, intron 10 of 13) 102665 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 214-247 chr4 141278145 141278291 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 54399 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 313-558 chr9 84407279 84407495 + 2 NA Intergenic Intergenic -38660 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 493-280 chr7 83610986 83611471 + 2 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 30203 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 363-429 chr8 31047459 31047690 + 2 NA intron (NM_000553, intron 1 of 34) intron (NM_000553, intron 1 of 34) -14218 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 319-360 chr4 37084472 37084776 + 2 NA Intergenic AluY|SINE|Alu 82845 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 301-15 chr1 169700455 169700697 + 2 NA intron (NR_029467, intron 5 of 6) intron (NR_029467, intron 5 of 6) 8281 NR_029467 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 324-302 chr2 230779209 230779376 + 2 NA intron (NM_001130850, intron 2 of 8) intron (NM_001130850, intron 2 of 8) 65744 NM_001130850 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 151-17 chr11 48536663 48536766 + 2 NA Intergenic Intergenic 47921 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 377-346 chr6 62613149 62613376 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -327035 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 263-63 chr11 5068846 5069094 + 2 NA promoter-TSS (NR_145505) promoter-TSS (NR_145505) -402 NM_001348221 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 610-37 chr12 94094035 94094489 + 2 NA Intergenic MIRb|SINE|MIR -54315 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 329-61 chr10 67900700 67900896 + 2 NA intron (NM_001142498, intron 3 of 7) intron (NM_001142498, intron 3 of 7) 9396 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 244-233 chr3 110766294 110766523 + 2 NA Intergenic L1MA8|LINE|L1 303551 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 278-350 chr5 120361552 120361809 + 2 NA Intergenic MIRb|SINE|MIR -102598 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 410-12 chr1 119268065 119268445 + 2 NA intron (NR_125975, intron 6 of 6) intron (NR_125975, intron 6 of 6) -59997 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 452-53 chr12 15505658 15505986 + 2 NA intron (NM_030667, intron 6 of 26) intron (NM_030667, intron 6 of 26) -40789 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 217-279 chr4 187501154 187501327 + 2 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 4373 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 267-261 chr3 101192086 101192324 + 2 NA Intergenic Intergenic 128370 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 119-58 chr8 48751229 48751337 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -15972 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 298-163 chr17 54690992 54691158 + 2 NA Intergenic Intergenic -209616 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 250-324 chr4 130577466 130577638 + 2 NA Intergenic Intergenic 201191 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 305-112 chr12 16932535 16932819 + 2 NA Intergenic L1ME1|LINE|L1 -56070 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 367-256 chr21 18319834 18320042 + 2 NA intron (NM_002772, intron 16 of 24) intron (NM_002772, intron 16 of 24) 74063 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 356-484 chr8 108471749 108472045 + 2 NA TTS (NM_001329494) TTS (NM_001329494) 28273 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 506-139 chr2 56887374 56887776 + 2 NA Intergenic Intergenic -701805 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 853-36 chr7 14445563 14446224 + 2 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 395557 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 389-352 chr7 124296588 124296881 + 2 NA Intergenic Intergenic 55362 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 337-112 chr12 30147255 30147486 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -362611 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 248-261 chr3 187097006 187097197 + 2 NA Intergenic L1PB2|LINE|L1 42395 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 351-476 chr8 59546507 59546852 + 2 NA Intergenic Intergenic 427469 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 419-284 chr8 28960984 28961284 + 2 NA intron (NM_001324393, intron 2 of 11) intron (NM_001324393, intron 2 of 11) 69820 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 385-310 chr5 141407012 141407358 + 2 NA intron (NM_018921, intron 1 of 3) intron (NM_018921, intron 1 of 3) -1018 NM_018926 56100 Hs.368160 NM_018926 ENSG00000253305 PCDHGB6 PCDH-GAMMA-B6 protocadherin gamma subfamily B, 6 protein-coding 452-296 chr9 130742561 130742970 + 2 NA intron (NM_007313, intron 1 of 10) (TATG)n|Simple_repeat|Simple_repeat 28884 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 350-390 chr5 27604179 27604487 + 2 NA Intergenic L1ME2|LINE|L1 132041 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 556-137 chr22 33767465 33767889 + 2 NA intron (NM_001362953, intron 1 of 14) LTR82B|LTR|ERVL 42691 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 408-108 chr14 82203297 82203586 + 2 NA Intergenic Intergenic -439191 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 393-217 chr3 76529253 76529508 + 2 NA Intergenic Intergenic -510719 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 486-74 chr14 49969546 49969881 + 2 NA Intergenic AluSx|SINE|Alu 3314 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 329-163 chr14 61482918 61483188 + 2 NA intron (NM_006255, intron 9 of 13) intron (NM_006255, intron 9 of 13) 87141 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 198-140 chr2 180448310 180448443 + 2 NA Intergenic Intergenic -243728 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 497-294 chr8 134032128 134032504 + 2 NA Intergenic L2c|LINE|L2 145820 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 401-277 chr6 19888019 19888307 + 2 NA Intergenic Intergenic 50793 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 309-214 chr18 29956170 29956343 + 2 NA Intergenic L1MA2|LINE|L1 -342654 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 401-326 chr8 109869446 109869821 + 2 NA Intergenic L2|LINE|L2 106138 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 218-5 chr1 51057687 51057853 + 2 NA Intergenic AluSx1|SINE|Alu -2067 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 253-194 chr2 116321684 116321818 + 2 NA Intergenic Intergenic 977936 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 402-193 chr21 28565779 28566157 + 2 NA Intergenic L1PA16|LINE|L1 26650 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 298-268 chr21 28757174 28757358 + 2 NA Intergenic Intergenic 128101 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 558-65 chr15 88420398 88420789 + 2 NA Intergenic LTR47A|LTR|ERVL 46795 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 256-86 chr12 31536465 31536639 + 2 NA intron (NM_001308339, intron 1 of 22) L1MA3|LINE|L1 -53371 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 523-51 chr11 54924316 54924720 + 2 NA Intergenic ALR/Alpha|Satellite|centr 217686 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 234-308 chr5 44161839 44162018 + 2 NA Intergenic L1ME2|LINE|L1 -226804 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 358-68 chr11 68244462 68244728 + 2 NA Intergenic AluJr|SINE|Alu 27378 NM_001300913 53838 Hs.303025 NM_022338 ENSG00000171067 C11orf24 DM4E3 chromosome 11 open reading frame 24 protein-coding 412-224 chr3 180178130 180178406 + 2 NA Intergenic L1ME3C|LINE|L1 -141331 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 494-230 chr5 57716480 57716798 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 65979 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 355-540 chrX 52126567 52126757 + 2 NA Intergenic L1PA15|LINE|L1 -57390 NM_001242362 81557 Hs.522650 NM_030801 ENSG00000187243 MAGED4B - MAGE family member D4B protein-coding 339-154 chr14 49423600 49423900 + 2 NA Intergenic Intergenic 162630 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 386-84 chr13 71421590 71421849 + 2 NA Intergenic L1MA9|LINE|L1 406578 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 137-50 chr2 151108796 151108913 + 2 NA Intergenic HAL1|LINE|L1 153009 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 319-69 chr10 76704686 76704937 + 2 NA Intergenic L1M1|LINE|L1 -183233 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 227-252 chr4 53288569 53288751 + 2 NA intron (NM_152540, intron 3 of 8) L1M2a|LINE|L1 77401 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 207-107 chr17 79653961 79654146 + 2 NA Intergenic Intergenic -43002 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 319-29 chr1 172199474 172199662 + 2 NA intron (NR_146559, intron 15 of 20) L1PA14|LINE|L1 -54733 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 286-64 chr11 30763379 30763565 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -177119 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 358-508 chr9 21887982 21888192 + 2 NA Intergenic L1PB1|LINE|L1 -79052 NR_024274 51198 Hs.721053 NM_016349 CDKN2A-DT C9orf53|CDKN2A-AS1|bA149I2.3 CDKN2A divergent transcript ncRNA 322-245 chr2 63520425 63520700 + 2 NA intron (NR_148705, intron 1 of 16) L1PA13|LINE|L1 67915 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 475 chr1 14719236 14719626 + 2 NA intron (NM_201628, intron 1 of 14) L2a|LINE|L2 120714 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 333-371 chr3 155248582 155248828 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 7760 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 341-335 chr3 70873565 70873893 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie 191195 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 248-362 chr7 3851633 3851817 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -277960 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 212-206 chr3 31001309 31001463 + 2 NA Intergenic Intergenic -106725 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 255-145 chr16 52720139 52720315 + 2 NA Intergenic Intergenic -113252 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 186-83 chr2 86538014 86538196 + 2 NA intron (NM_001005753, intron 1 of 4) L1MB3|LINE|L1 25338 NM_016079 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 386-307 chr6 6420811 6421180 + 2 NA intron (NR_026970, intron 4 of 7) ERVL-int|LTR|ERVL -100304 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 267-74 chr11 132503958 132504163 + 2 NA intron (NM_002545, intron 3 of 6) intron (NM_002545, intron 3 of 6) 219758 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 189-72 chr17 63538989 63539138 + 2 NA intron (NM_030779, intron 8 of 13) intron (NM_030779, intron 8 of 13) -11414 NM_005828 10238 Hs.410596 NM_005828 ENSG00000136485 DCAF7 AN11|HAN11|SWAN-1|WDR68 DDB1 and CUL4 associated factor 7 protein-coding 303-103 chr13 47851097 47851300 + 2 NA Intergenic Intergenic 81424 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 264-183 chr19 13896513 13896685 + 2 NA intron (NM_001345843, intron 2 of 8) intron (NM_001345843, intron 2 of 8) 9518 NM_001345847 79173 Hs.143288 NM_024323 ENSG00000132016 C19orf57 - chromosome 19 open reading frame 57 protein-coding 270-49 chr11 6857621 6857803 + 2 NA Intergenic Intergenic 12029 NM_178168 144124 Hs.447478 NM_178168 ENSG00000166363 OR10A5 JCG6|OR10A1|OR11-403 olfactory receptor family 10 subfamily A member 5 protein-coding 334-311 chr20 40826383 40826652 + 2 NA Intergenic HAL1|LINE|L1 -111894 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 361-194 chr19 29344948 29345151 + 2 NA intron (NR_040029, intron 9 of 9) L1MB3|LINE|L1 -131898 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 181-109 chr4 106006672 106006795 + 2 NA intron (NR_125928, intron 3 of 3) L1MEc|LINE|L1 15745 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 297-415 chr6 115819855 115820146 + 2 NA Intergenic L2a|LINE|L2 -176165 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 678-85 chr5 21050766 21051200 + 2 NA Intergenic MLT2B1|LTR|ERVL -408497 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 525-65 chr13 80682620 80682912 + 2 NA Intergenic HAL1|LINE|L1 -335625 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 353-5 chr1 41750902 41751126 + 2 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 167908 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 302-433 chr8 23429721 23429951 + 2 NA 3' UTR (NM_001128930, exon 13 of 13) 3' UTR (NM_001128930, exon 13 of 13) -25716 NM_002318 4017 Hs.626637 NM_002318 ENSG00000134013 LOXL2 LOR|LOR2|WS9-14 lysyl oxidase like 2 protein-coding 252-361 chr6 39633530 39633723 + 2 NA intron (NM_001289020, intron 5 of 21) intron (NM_001289020, intron 5 of 21) 91782 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 422-112 chr17 33783540 33783903 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -249961 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 382-449 chrX 83889250 83889618 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 28288 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 271-274 chr3 95327430 95327573 + 2 NA Intergenic L1PB3|LINE|L1 355692 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 400-78 chr13 23455460 23455824 + 2 NA Intergenic Intergenic -13870 NR_038995 100506697 Hs.50118 NR_038995 ENSG00000232977 LINC00327 NCRNA00327 long intergenic non-protein coding RNA 327 ncRNA 388-156 chr2 45701604 45701883 + 2 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 50068 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 396-280 chr5 52221618 52221832 + 2 NA Intergenic Intergenic 213694 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 312-379 chr4 87670677 87670896 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 20506 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 263-42 chr10 31710449 31710639 + 2 NA Intergenic L1M6|LINE|L1 198382 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 216-25 chr1 184584945 184585116 + 2 NA intron (NM_030806, intron 3 of 5) L1MB7|LINE|L1 169828 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 235-230 chr3 53565105 53565253 + 2 NA intron (NM_001128840, intron 3 of 47) L1ME3B|LINE|L1 70568 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 209-254 chr5 83853790 83853990 + 2 NA Intergenic Intergenic -133035 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 290-365 chr5 122394435 122394716 + 2 NA intron (NR_131762, intron 2 of 9) intron (NR_131762, intron 2 of 9) 3486 NR_131761 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 562-29 chr11 9678621 9678952 + 2 NA intron (NM_015055, intron 1 of 11) Tigger20a|DNA|TcMar-Tigger 14709 NM_001297714 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 173-79 chr2 213267206 213267333 + 2 NA Intergenic AluSp|SINE|Alu 16940 NR_144752 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 362-235 chr2 162381524 162381831 + 2 NA intron (NM_033272, intron 13 of 15) intron (NM_033272, intron 13 of 15) 37309 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 247-369 chr6 147041435 147041627 + 2 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -117394 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 302-246 chr20 22231251 22231441 + 2 NA Intergenic MIR3|SINE|MIR 51455 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 357-89 chr12 102735623 102735939 + 2 NA Intergenic Intergenic 88618 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 321-31 chr1 198341300 198341480 + 2 NA Intergenic Intergenic 184392 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 282-298 chr3 68568698 68568949 + 2 NA Intergenic L1MA8|LINE|L1 68186 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 630-123 chr7 7045514 7046082 + 2 NA Intergenic Intergenic 21247 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 510-51 chr11 81862562 81862908 + 2 NA Intergenic MER30|DNA|hAT-Charlie 28101 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 320-516 chr7 61735243 61735421 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1568724 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 484-160 chr21 29040897 29041348 + 2 NA intron (NM_001032410, intron 11 of 18) MER3|DNA|hAT-Charlie 16454 NM_006447 10600 Hs.99819 NM_006447 ENSG00000156256 USP16 UBP-M|UBPM ubiquitin specific peptidase 16 protein-coding 337-350 chr3 55064672 55064858 + 2 NA intron (NM_018398, intron 35 of 37) intron (NM_018398, intron 35 of 37) -97663 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 428-56 chr13 71000993 71001307 + 2 NA Intergenic Intergenic -13991 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 298-33 chr1 248098845 248099022 + 2 NA intron (NM_175911, intron 2 of 2) intron (NM_175911, intron 2 of 2) -23203 NR_002141 388762 Hs.528509 NR_002141 OR2M1P JCG10|OR2M1|OST037 olfactory receptor family 2 subfamily M member 1 pseudogene pseudo 459-211 chr4 65029340 65029659 + 2 NA Intergenic Intergenic -24999 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 276-428 chr7 49555982 49556211 + 2 NA Intergenic Intergenic -217542 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 315-43 chr10 14140763 14141053 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 66624 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 330-444 chr5 156542400 156542588 + 2 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 215330 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 454-319 chr8 116923263 116923709 + 2 NA Intergenic AluSz|SINE|Alu -14721 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 183-130 chr6 50059559 50059688 + 2 NA Intergenic LTR81|LTR|Gypsy -9694 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 493-276 chr7 52259627 52259947 + 2 NA Intergenic AluSz|SINE|Alu -775846 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 217-17 chr1 175962399 175962549 + 2 NA intron (NM_022457, intron 18 of 19) MER34A|LTR|ERV1 6005 NR_162097 113839518 NR_162097 MIR1843 - microRNA 1843 ncRNA 305-47 chr1 237588246 237588420 + 2 NA intron (NM_001035, intron 29 of 104) intron (NM_001035, intron 29 of 104) 117214 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 262-138 chr14 103395056 103395299 + 2 NA intron (NM_001128920, intron 1 of 15) intron (NM_001128920, intron 1 of 15) 9762 NM_001128918 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a|VIPB microtubule affinity regulating kinase 3 protein-coding 604-166 chr8 122232894 122233323 + 2 NA Intergenic Intergenic 335536 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 403-150 chr2 29618208 29618511 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -142982 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 173-20 chr11 96629692 96629843 + 2 NA Intergenic PRIMA4-int|LTR|ERV1 121342 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 379-8 chr1 58433342 58433610 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 113250 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 238-389 chr8 105132690 105132828 + 2 NA Intergenic Intergenic -185679 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 314-461 chr5 51769114 51769363 + 2 NA Intergenic Intergenic -238793 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 362-440 chr8 97490183 97490375 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -43782 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 390-250 chr3 153071714 153072018 + 2 NA Intergenic FLAM_A|SINE|Alu -90360 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 248-229 chr21 22353000 22353165 + 2 NA Intergenic L1MC1|LINE|L1 254465 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 381-333 chr6 73038935 73039188 + 2 NA intron (NM_001160132, intron 2 of 13) L1MD2|LINE|L1 -71308 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 162-83 chr3 63244786 63244891 + 2 NA Intergenic Intergenic -33470 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 362-410 chr7 106387697 106387943 + 2 NA Intergenic L1MA3|LINE|L1 -102837 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 399-181 chr20 22308289 22308585 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -25636 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 245-48 chr10 60539530 60539719 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 33332 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 163-11 chr1 200091167 200091304 + 2 NA intron (NM_205860, intron 5 of 7) intron (NM_205860, intron 5 of 7) 48410 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 390-356 chr7 67685191 67685536 + 2 NA Intergenic L1ME3Cz|LINE|L1 -334890 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 312-162 chr15 57849214 57849490 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 142638 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 323-261 chr2 106083998 106084251 + 2 NA Intergenic MIR3|SINE|MIR 18436 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 311-200 chr17 61493597 61493856 + 2 NA Intergenic Intergenic 37238 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 279-54 chr10 88615082 88615284 + 2 NA Intergenic L1ME3|LINE|L1 28421 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 308-383 chr5 62022749 62022956 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -283310 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 313-204 chr17 65510568 65510753 + 2 NA Intergenic L1ME2|LINE|L1 50988 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 234-338 chr6 51096004 51096205 + 2 NA Intergenic Intergenic 277233 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 211-83 chr14 45629551 45629711 + 2 NA Intergenic L1MC|LINE|L1 85971 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 270-136 chr16 7513553 7513798 + 2 NA intron (NM_145893, intron 1 of 13) MER20|DNA|hAT-Charlie 180830 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 460-84 chr14 72019347 72019651 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 85972 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 276-79 chr11 48669584 48669762 + 2 NA Intergenic ALR/Alpha|Satellite|centr 180880 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 294-479 chr8 129247770 129247966 + 2 NA Intergenic Intergenic -6628 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 181-163 chr8 112134672 112134811 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -508752 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 318-586 chrX 45455415 45455688 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -49837 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 250-129 chr14 85680914 85681075 + 2 NA Intergenic L1M4|LINE|L1 147645 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 348-55 chr10 61240262 61240511 + 2 NA Intergenic L2a|LINE|L2 -212253 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 345-493 chr7 39181277 39181467 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) 147762 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 352-352 chr4 36038677 36038994 + 2 NA intron (NR_146893, intron 35 of 36) intron (NR_146893, intron 35 of 36) 205104 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 253-197 chr2 134472261 134472425 + 2 NA intron (NM_030923, intron 5 of 7) L1MC|LINE|L1 218271 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 334-503 chr7 71029779 71030044 + 2 NA Intergenic AluSq2|SINE|Alu -102233 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 293-186 chr2 58534237 58534471 + 2 NA intron (NR_033873, intron 1 of 13) L2a|LINE|L2 13601 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 296-76 chr11 70883197 70883380 + 2 NA intron (NM_012309, intron 10 of 24) intron (NM_012309, intron 10 of 24) -10920 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 326-388 chr4 172706803 172707014 + 2 NA intron (NR_125894, intron 1 of 2) L1M3f|LINE|L1 -17991 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 336-282 chr2 116994901 116995223 + 2 NA Intergenic Intergenic -819629 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 335-144 chr13 74745175 74745398 + 2 NA Intergenic Intergenic 192443 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 282-206 chr2 67490137 67490397 + 2 NA Intergenic Intergenic 92934 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 306-301 chr3 25503628 25503913 + 2 NA intron (NR_110892, intron 3 of 6) intron (NR_110892, intron 3 of 6) 45460 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 217-89 chr12 79519009 79519216 + 2 NA Intergenic Intergenic 99855 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 429-290 chr8 36884916 36885296 + 2 NA intron (NM_001031836, intron 19 of 26) L1MCa|LINE|L1 100732 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 162-102 chr4 147740753 147740872 + 2 NA intron (NM_024605, intron 1 of 22) intron (NM_024605, intron 1 of 22) 8724 NM_024605 79658 Hs.368631 NM_024605 ENSG00000071205 ARHGAP10 GRAF2|PS-GAP|PSGAP Rho GTPase activating protein 10 protein-coding 318-386 chr4 29366944 29367178 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 152769 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 171-45 chr17 56602504 56602615 + 2 NA Intergenic Intergenic 8860 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 554-45 chr11 36245114 36245505 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 44115 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 257-241 chr20 52583002 52583225 + 2 NA Intergenic Intergenic -37725 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 238-164 chr2 36181878 36182041 + 2 NA Intergenic Intergenic 173611 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 283-77 chr11 30811911 30812139 + 2 NA Intergenic Intergenic 180661 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 138-9 chr10 97471003 97471122 + 2 NA intron (NM_001289403, intron 7 of 29) intron (NM_001289403, intron 7 of 29) 24887 NM_198046 84287 Hs.76662 NM_032327 ENSG00000171307 ZDHHC16 APH2|DHHC-16 zinc finger DHHC-type containing 16 protein-coding 292-86 chr11 125046709 125046964 + 2 NA Intergenic L2|LINE|L2 -16469 NM_001145290 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 367-252 chr20 54937364 54937592 + 2 NA Intergenic L2b|LINE|L2 461885 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 464-268 chr9 77521838 77522198 + 2 NA intron (NR_121184, intron 4 of 4) AluSx|SINE|Alu 74369 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 226-151 chr2 16950011 16950172 + 2 NA Intergenic Intergenic -284257 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 268-230 chr22 22831842 22832052 + 2 NA Intergenic L1MC4a|LINE|L1 9171 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 463-261 chr7 20430266 20430725 + 2 NA Intergenic Intergenic -98733 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 146-10 chr10 12694982 12695111 + 2 NA intron (NM_001351032, intron 5 of 11) (GATA)n|Simple_repeat|Simple_repeat 30307 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 349-196 chr16 51257179 51257408 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -106021 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 564-89 chr2 52304 52820 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -6057 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 269-9 chr1 61455494 61455649 + 2 NA 3' UTR (NM_001145511, exon 11 of 11) 3' UTR (NM_001145511, exon 11 of 11) -198671 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 340-208 chr17 73916379 73916641 + 2 NA Intergenic L1ME1|LINE|L1 -87973 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 367-73 chr11 39208601 39208845 + 2 NA Intergenic MIR|SINE|MIR 559865 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 139-13 chr10 131301792 131301875 + 2 NA intron (NM_174937, intron 3 of 11) A-rich|Low_complexity|Low_complexity 9888 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 465-9 chr1 81544440 81544837 + 2 NA intron (NR_125943, intron 1 of 3) intron (NR_125943, intron 1 of 3) 13064 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 192-28 chr10 104568601 104568765 + 2 NA Intergenic L1MA8|LINE|L1 -72607 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 389-74 chr12 11959791 11960122 + 2 NA Intergenic L3|LINE|CR1 -89905 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 322-497 chr7 79868549 79868789 + 2 NA Intergenic L3|LINE|CR1 -266162 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 233-267 chr4 92539784 92539926 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 235456 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 343-432 chr5 71834341 71834613 + 2 NA Intergenic L1MA7|LINE|L1 115202 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 469-195 chr4 33796163 33796450 + 2 NA Intergenic Intergenic 243587 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 266-327 chr5 44477927 44478085 + 2 NA Intergenic Intergenic 32276 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 369-390 chr7 99939564 99939834 + 2 NA Intergenic HERV16-int|LTR|ERVL -10079 NM_181538 349149 Hs.647524 NM_181538 ENSG00000176402 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein gamma 3 protein-coding 187-44 chr13 50757443 50757598 + 2 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -50335 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 340-304 chr2 234482691 234482878 + 2 NA Intergenic MIRb|SINE|MIR 14265 NM_005737 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 372-20 chr1 111005091 111005358 + 2 NA Intergenic MER34|LTR|ERV1 -41280 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 359-414 chr5 174445723 174445922 + 2 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 109468 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 346-84 chr11 116439892 116440173 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -199390 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 363-73 chr10 132697827 132698029 + 2 NA intron (NM_005539, intron 6 of 15) intron (NM_005539, intron 6 of 15) 16653 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 493-257 chr6 48849502 48849931 + 2 NA Intergenic L1PB1|LINE|L1 613537 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 577-112 chr22 34816368 34816798 + 2 NA intron (NR_138042, intron 3 of 4) L2a|LINE|L2 181333 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 195-176 chr4 168584163 168584317 + 2 NA intron (NM_001166108, intron 2 of 21) intron (NM_001166108, intron 2 of 21) -47338 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 262-294 chr3 164984521 164984760 + 2 NA intron (NM_001041, intron 45 of 47) intron (NM_001041, intron 45 of 47) 93856 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 195-62 chr14 50698036 50698172 + 2 NA Intergenic L1PA14|LINE|L1 -29798 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 370-279 chr21 22714985 22715238 + 2 NA Intergenic MER66B|LTR|ERV1 -364173 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 356-55 chr10 64712664 64712922 + 2 NA Intergenic Intergenic -112735 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 166-113 chr7 108270930 108271087 + 2 NA intron (NM_001371141, intron 3 of 29) U7|snRNA|snRNA -27623 NM_001371181 178-115 chr5 151533844 151534019 + 2 NA intron (NM_001447, intron 12 of 22) intron (NM_001447, intron 12 of 22) -11783 NR_106752 102465246 NR_106752 ENSG00000276622 MIR6499 hsa-mir-6499|mir-6499 microRNA 6499 ncRNA 342-142 chr14 54113058 54113236 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -156256 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 192-98 chr2 81878211 81878347 + 2 NA Intergenic Intergenic -411333 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 295-190 chr19 31133707 31133861 + 2 NA Intergenic L2a|LINE|L2 -33726 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 274-265 chr3 113040763 113040918 + 2 NA Intergenic Intergenic -21169 NM_001319112 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 233-147 chr19 43917847 43918023 + 2 NA intron (NM_003425, intron 9 of 9) intron (NM_003425, intron 9 of 9) -16132 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 593-111 chr5 966376 966904 + 2 NA Intergenic AluJb|SINE|Alu 30700 NR_104614 100506688 Hs.532063 NM_001242737 ENSG00000215246 LOC100506688 - uncharacterized LOC100506688 ncRNA 363-93 chr11 127302993 127303341 + 2 NA intron (NR_120580, intron 1 of 2) L3|LINE|CR1 32097 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 287-280 chr4 48736313 48736591 + 2 NA intron (NM_015030, intron 1 of 63) L1MC1|LINE|L1 43847 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 232-71 chr12 21756471 21756616 + 2 NA Intergenic Intergenic 18163 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 188-30 chr11 113641094 113641253 + 2 NA Intergenic MIRc|SINE|MIR 65135 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 305-407 chr4 138200899 138201177 + 2 NA intron (NM_014331, intron 6 of 11) intron (NM_014331, intron 6 of 11) 41311 NM_014331 23657 Hs.390594 NM_014331 ENSG00000151012 SLC7A11 CCBR1|xCT solute carrier family 7 member 11 protein-coding 623-67 chr2 125851453 125851860 + 2 NA Intergenic Intergenic 266329 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 892-30 chr3 118318617 118319248 + 2 NA Intergenic L1M1|LINE|L1 -322836 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 398-320 chr7 36666019 36666347 + 2 NA intron (NM_001177507, intron 2 of 19) L1MCa|LINE|L1 58311 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 305-208 chr18 407967 408192 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 92622 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 342-35 chr1 172176987 172177290 + 2 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -32303 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 413-193 chr3 97158098 97158343 + 2 NA intron (NM_001080448, intron 3 of 17) ERVL-B4-int|LTR|ERVL -281387 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 423-283 chr7 142034806 142035084 + 2 NA intron (NM_004668, intron 16 of 47) intron (NM_004668, intron 16 of 47) 39066 NM_001365693 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 401-293 chr6 153636161 153636521 + 2 NA Intergenic L1MA1|LINE|L1 -374155 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 485-248 chr6 94455555 94455860 + 2 NA Intergenic Intergenic 737404 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 337-333 chr3 5954026 5954343 + 2 NA Intergenic L1PA15|LINE|L1 -703929 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 531-272 chrX 70734952 70735402 + 2 NA intron (NM_001003811, intron 12 of 30) AluSq2|SINE|Alu 111118 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 356-372 chr4 124697242 124697451 + 2 NA intron (NM_001167882, intron 1 of 3) MSTB2|LTR|ERVL-MaLR 15386 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 319-16 chr1 105652294 105652588 + 2 NA Intergenic Intergenic -33506 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 407-49 chr11 55725139 55725431 + 2 NA Intergenic Intergenic -48153 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 326-166 chr15 42413390 42413622 + 2 NA 3' UTR (NM_001284307, exon 20 of 20) 3' UTR (NM_001284307, exon 20 of 20) 8727 NM_173090 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 366-335 chr5 11609922 11610284 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -21037 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 133-32 chr2 33984313 33984385 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -82877 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 325-537 chr8 58912128 58912379 + 2 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) 206894 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 442-240 chr5 155457781 155458073 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 444172 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 270-139 chr16 12325688 12325857 + 2 NA intron (NM_032167, intron 15 of 20) AluJr4|SINE|Alu 349038 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 544-204 chr7 10162999 10163323 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 528891 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 627-88 chr5 41047200 41047712 + 2 NA intron (NM_173489, intron 17 of 41) intron (NM_173489, intron 17 of 41) 23886 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 302-499 chrX 96282011 96282259 + 2 NA Intergenic Intergenic 55767 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 326-42 chr1 192659280 192659554 + 2 NA exon (NM_002927, exon 7 of 7) exon (NM_002927, exon 7 of 7) 23270 NM_144766 6003 Hs.497220 NM_002927 ENSG00000127074 RGS13 - regulator of G protein signaling 13 protein-coding 174-41 chr14 45700909 45701011 + 2 NA Intergenic Intergenic 14642 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 239-90 chr13 77839235 77839361 + 2 NA intron (NR_103853, intron 6 of 6) intron (NR_103853, intron 6 of 6) 20361 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 269-242 chr22_KI270737v1_random 38485 38641 + 2 NA NA (TCCAT)n|Simple_repeat|Simple_repeat NA NA 280-280 chr4 37118853 37119033 + 2 NA Intergenic Intergenic 117164 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 595-120 chr4 41294110 41294471 + 2 NA Intergenic Intergenic 37362 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 239-387 chr7 123922231 123922431 + 2 NA Intergenic MER34A|LTR|ERV1 -2910 NM_003117 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 306-501 chr8 63250370 63250577 + 2 NA Intergenic LTR41B|LTR|ERVL 81470 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 336-123 chr12 24205865 24206118 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -6430 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 387-309 chr6 64793825 64794125 + 2 NA intron (NM_001292009, intron 22 of 43) L1MB1|LINE|L1 -507443 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 238-189 chr2 166838779 166839002 + 2 NA Intergenic Intergenic -49597 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 342-314 chr3 61867519 61867704 + 2 NA intron (NM_002841, intron 2 of 29) MIRb|SINE|MIR 306040 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 571-154 chr7 48766034 48766442 + 2 NA Intergenic Intergenic -158309 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 431-82 chr14 58934580 58934804 + 2 NA intron (NR_110547, intron 3 of 5) L1PREC2|LINE|L1 106404 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 293-152 chr17 32725084 32725274 + 2 NA intron (NM_015194, intron 14 of 21) L1MEg|LINE|L1 151945 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 347-236 chr2 107609666 107609897 + 2 NA Intergenic Intergenic 80362 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 825-14 chr18 75801765 75802475 + 2 NA Intergenic Intergenic -89717 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 279-278 chr3 175749853 175750127 + 2 NA intron (NM_207015, intron 12 of 13) intron (NM_207015, intron 12 of 13) 26343 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 260-112 chr12 131600332 131600552 + 2 NA Intergenic Charlie13b|DNA|hAT-Charlie 47679 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 320-362 chr3 135958878 135959071 + 2 NA Intergenic L1M3f|LINE|L1 -6754 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 174-153 chr9 35342499 35342622 + 2 NA intron (NM_001371188, intron 1 of 29) intron (NM_001371188, intron 1 of 29) 664 NM_001371187 242-190 chr2 88149552 88149749 + 2 NA Intergenic L1MA5|LINE|L1 -20645 NM_001244678 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 371-67 chr11 35383604 35383909 + 2 NA intron (NM_001252652, intron 1 of 11) L2b|LINE|L2 35802 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 256-402 chr7 137834109 137834270 + 2 NA intron (NM_001321708, intron 1 of 32) intron (NM_001321708, intron 1 of 32) 12143 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 575-103 chr20 40848871 40849249 + 2 NA Intergenic Intergenic -131653 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 204-149 chr2 104591874 104592025 + 2 NA Intergenic HERVL-int|LTR|ERVL -81440 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 252-224 chr2 205531792 205532011 + 2 NA intron (NM_205863, intron 20 of 21) intron (NM_205863, intron 20 of 21) -150599 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 298-225 chr2 114866185 114866411 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -32750 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 342-439 chr6 4631108 4631367 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger 20672 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 232-97 chr14 49642163 49642340 + 2 NA Intergenic Intergenic -7021 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 352-36 chr10 17484262 17484459 + 2 NA Intergenic AluJo|SINE|Alu -29765 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 675-84 chr7 7445275 7445742 + 2 NA intron (NM_001037763, intron 18 of 34) MLT1C|LTR|ERVL-MaLR 90365 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 370-253 chr2 165151935 165152269 + 2 NA intron (NM_006922, intron 11 of 27) L1MEc|LINE|L1 51948 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 682-6 chr1 247038601 247039013 + 2 NA intron (NM_033213, intron 3 of 3) intron (NM_033213, intron 3 of 3) -30750 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 291-50 chr10 54935237 54935439 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -134047 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 275-281 chr4 178007101 178007331 + 2 NA Intergenic L1PA16|LINE|L1 -99280 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 495-23 chr10 18182863 18183192 + 2 NA intron (NM_201593, intron 2 of 13) MIRb|SINE|MIR 42603 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 227-226 chr3 62543102 62543252 + 2 NA intron (NM_003716, intron 11 of 29) intron (NM_003716, intron 11 of 29) -169627 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 245-362 chr9 4272909 4273067 + 2 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) 27080 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 262-54 chr10 73538290 73538511 + 2 NA intron (NR_146997, intron 10 of 21) intron (NR_146997, intron 10 of 21) 14940 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 229-253 chr3 99299623 99299818 + 2 NA Intergenic L1MEg1|LINE|L1 -338874 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 364-419 chr7 93171749 93172077 + 2 NA Intergenic LTR8B|LTR|ERV1 -23528 NM_152703 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 301-365 chr5 109129735 109129941 + 2 NA intron (NR_146155, intron 17 of 19) L1M5|LINE|L1 196531 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 201-45 chr11 39938174 39938323 + 2 NA Intergenic Intergenic 354882 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 322-229 chr2 6235280 6235463 + 2 NA Intergenic Intergenic 140051 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 328-280 chr2 142311795 142311982 + 2 NA Intergenic Intergenic -180187 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 296-195 chr18 33447417 33447621 + 2 NA Intergenic L1MCa|LINE|L1 -6479 NM_001371120 260-409 chr7 53717110 53717340 + 2 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 94706 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 161-53 chr2 71284633 71284730 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -47074 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 312-477 chr7 29780931 29781162 + 2 NA Intergenic HAL1|LINE|L1 -25508 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 479-203 chr5 141412572 141412864 + 2 NA promoter-TSS (NM_018913) promoter-TSS (NM_018913) -458 NM_018913 56106 Hs.368160 NM_018913 ENSG00000253846 PCDHGA10 PCDH-GAMMA-A10 protocadherin gamma subfamily A, 10 protein-coding 390-301 chr5 118210457 118210735 + 2 NA intron (NR_104997, intron 2 of 2) THE1D|LTR|ERVL-MaLR -71978 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 536-58 chr12 58366828 58367198 + 2 NA Intergenic Intergenic -224689 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 133-5 chr1 147854151 147854280 + 2 NA Intergenic Intergenic -48580 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 234-80 chr12 115170345 115170526 + 2 NA Intergenic Intergenic -486260 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 507-133 chr2 118904310 118904775 + 2 NA Intergenic Intergenic -37627 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 307-439 chr6 159257165 159257345 + 2 NA intron (NM_032532, intron 18 of 22) intron (NM_032532, intron 18 of 22) -87248 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 579-104 chr3 138195366 138195776 + 2 NA intron (NM_001363942, intron 2 of 21) intron (NM_001363942, intron 2 of 21) 8040 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 136-91 chr8 144024694 144024769 + 2 NA intron (NM_198572, intron 1 of 4) intron (NM_198572, intron 1 of 4) 12451 NM_001134374 375686 Hs.97726 NM_198572 ENSG00000186583 SPATC1 SPATA15 spermatogenesis and centriole associated 1 protein-coding 219-342 chr7 97362880 97363058 + 2 NA Intergenic Intergenic 246376 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 540-120 chr2 131432776 131433156 + 2 NA Intergenic Intergenic 11928 NR_002826 401010 Hs.452369 NR_002826 NOC2LP2 - NOC2 like nucleolar associated transcriptional repressor pseudogene 2 pseudo 573-128 chr4 94424520 94424922 + 2 NA Intergenic L1PA17|LINE|L1 -27136 NR_046186 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 877-3 chr11 115018229 115018810 + 2 NA Intergenic L1ME3|LINE|L1 -315058 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 320-524 chr7 156192798 156193007 + 2 NA Intergenic L1M5|LINE|L1 230270 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 255-123 chr15 48492254 48492450 + 2 NA intron (NM_000138, intron 24 of 65) intron (NM_000138, intron 24 of 65) 153436 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 257-431 chr9 11246680 11246881 + 2 NA Intergenic (TTTTTTT)n|Simple_repeat|Simple_repeat 633574 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 541-113 chr2 79358162 79358611 + 2 NA Intergenic AluSq2|SINE|Alu 142458 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 257-82 chr12 7127621 7127830 + 2 NA intron (NM_001329454, intron 4 of 5) L2|LINE|L2 1164 NM_031491 83758 Hs.246046 NM_031491 ENSG00000139194 RBP5 CRBP-III|CRBP3|CRBPIII|HRBPiso retinol binding protein 5 protein-coding 416-357 chrX 41861949 41862296 + 2 NA intron (NM_003688, intron 1 of 26) L2c|LINE|L2 60912 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 604-124 chr4 144286100 144286565 + 2 NA Intergenic Intergenic -145614 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 336-396 chr4 36690780 36691017 + 2 NA Intergenic L1PA16|LINE|L1 -48998 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 314-177 chr14 78775237 78775468 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 371633 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 570-175 chr7 4345765 4346244 + 2 NA Intergenic Intergenic -211167 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 305-333 chr3 1727046 1727334 + 2 NA Intergenic Intergenic -371613 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 238-85 chr12 95339536 95339769 + 2 NA Intergenic MIRb|SINE|MIR 29729 NR_037456 100500802 NR_037456 ENSG00000265917 MIR3685 - microRNA 3685 ncRNA 341-457 chr6 15844897 15845104 + 2 NA Intergenic Intergenic -181942 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 489-275 chrX 101857177 101857523 + 2 NA intron (NR_159739, intron 1 of 18) MER103C|DNA|hAT-Charlie 227 NR_159737 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 377-146 chr16 14174023 14174230 + 2 NA intron (NM_001308142, intron 3 of 16) L1M3|LINE|L1 -12560 NM_001365413 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 314-441 chr4 157462026 157462228 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -110363 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 250-21 chr1 175113840 175114047 + 2 NA intron (NM_022093, intron 9 of 18) L1PB3|LINE|L1 46110 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 255-229 chr20 26350908 26351086 + 2 NA Intergenic ALR/Alpha|Satellite|centr -141764 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene ncRNA 331-72 chr10 116231074 116231248 + 2 NA intron (NM_005264, intron 4 of 10) intron (NM_005264, intron 4 of 10) 24634 NM_001348099 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 276-477 chr9 73441781 73441941 + 2 NA Intergenic MER21C|LTR|ERVL 289996 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 230-296 chr5 55082334 55082530 + 2 NA Intergenic Intergenic -20214 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 620-118 chr6 77791576 77792029 + 2 NA intron (NM_001282136, intron 3 of 4) L1MA8|LINE|L1 138763 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 444-221 chr6 114566828 114567109 + 2 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -504091 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 354-141 chr14 68103210 68103536 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 279781 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 179-124 chr8 122888759 122888887 + 2 NA intron (NM_001362797, intron 3 of 4) L1MA5|LINE|L1 107168 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 523-88 chr15 86657667 86658094 + 2 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -275000 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 517-127 chr2 59649836 59650240 + 2 NA Intergenic Intergenic 432330 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 321-375 chr3 76117532 76117727 + 2 NA Intergenic Intergenic -332080 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 496-219 chr5 106398803 106399141 + 2 NA Intergenic Intergenic 612042 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 254-453 chrX 121984675 121984891 + 2 NA Intergenic Intergenic 613811 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 116-30 chr3 185678559 185678627 + 2 NA intron (NR_138486, intron 7 of 15) L1M4c|LINE|L1 -34659 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 370-134 chr14 26214796 26214987 + 2 NA Intergenic Intergenic 338539 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 305-175 chr16 47356041 47356195 + 2 NA intron (NM_030790, intron 8 of 17) MIR|SINE|MIR 104945 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 272-277 chr3 110399326 110399505 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 670544 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 199-220 chr6 151575771 151575923 + 2 NA intron (NM_025059, intron 6 of 10) intron (NM_025059, intron 6 of 10) 81830 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 263-325 chr5 65132307 65132493 + 2 NA Intergenic Intergenic 349520 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 437-218 chr5 36893732 36894144 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 17169 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 378-42 chr1 233551656 233552019 + 2 NA Intergenic MER67C|LTR|ERV1 -62269 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 395-213 chr22 34884094 34884379 + 2 NA intron (NR_138042, intron 3 of 4) MamGypLTR2c|LTR|Gypsy 113680 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 366-175 chr18 24796271 24796541 + 2 NA Intergenic Intergenic 70625 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 306-163 chr15 53145666 53145860 + 2 NA Intergenic Intergenic 29398 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 288-481 chrX 93138929 93139159 + 2 NA Intergenic L1M4|LINE|L1 -314141 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 535-8 chr1 60964012 60964415 + 2 NA intron (NR_110617, intron 1 of 6) intron (NR_110617, intron 1 of 6) 6563 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 257-325 chr5 67861145 67861381 + 2 NA Intergenic L2|LINE|L2 68050 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 309-297 chr20 13655787 13655967 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -16941 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 409-64 chr13 72100501 72100846 + 2 NA Intergenic Intergenic -233469 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 386-56 chr11 82098007 82098355 + 2 NA intron (NR_120571, intron 4 of 7) intron (NR_120571, intron 4 of 7) -207345 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 500-162 chr2 225955864 225956226 + 2 NA Intergenic L1MEc|LINE|L1 -186749 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 477-195 chr3 28605341 28605692 + 2 NA intron (NR_038840, intron 2 of 4) L1ME3G|LINE|L1 30238 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 352-471 chr6 142307773 142308077 + 2 NA intron (NM_198569, intron 1 of 24) intron (NM_198569, intron 1 of 24) 5918 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 243-343 chr4 188969437 188969633 + 2 NA Intergenic Intergenic 192878 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 611-91 chr20 42229475 42229912 + 2 NA intron (NM_133170, intron 16 of 31) MIRb|SINE|MIR -455790 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 521-21 chr1 242625826 242626325 + 2 NA Intergenic Intergenic -101378 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 352-82 chr11 86368680 86369007 + 2 NA Intergenic Intergenic -5893 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 517-291 chr9 93699076 93699539 + 2 NA Intergenic Intergenic 104466 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 327-359 chr4 37239849 37240058 + 2 NA Intergenic Intergenic 2038 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 687-52 chr18 10491168 10491660 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac -34613 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 380-172 chr2 25952283 25952548 + 2 NA intron (NM_002254, intron 4 of 7) intron (NM_002254, intron 4 of 7) 30082 NM_002254 3797 Hs.21611 NM_002254 ENSG00000084731 KIF3C - kinesin family member 3C protein-coding 223-16 chr1 166636153 166636319 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 32320 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 236-326 chr7 41250729 41250921 + 2 NA Intergenic L2b|LINE|L2 149221 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 426-239 chr5 87568745 87568994 + 2 NA Intergenic Intergenic -93173 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 190-161 chr7 27271456 27271617 + 2 NA Intergenic L1ME1|LINE|L1 -24307 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 313-147 chr14 60191161 60191411 + 2 NA Intergenic Intergenic -21422 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 336-484 chr6 46565823 46565996 + 2 NA intron (NM_016593, intron 10 of 11) LTR45B|LTR|ERV1 -73842 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 592-87 chr2 114311303 114311742 + 2 NA Intergenic MLT2A2|LTR|ERVL -131119 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 341-161 chr15 27732764 27732954 + 2 NA Intergenic Intergenic 366456 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 319-73 chr10 89627897 89628076 + 2 NA intron (NM_148977, intron 1 of 6) L1MB8|LINE|L1 15930 NM_148978 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 423-81 chr14 94445738 94446078 + 2 NA intron (NM_001080451, intron 3 of 4) intron (NM_001080451, intron 3 of 4) 6892 NM_001080451 256394 Hs.145890 NM_001080451 ENSG00000186910 SERPINA11 - serpin family A member 11 protein-coding 336-34 chr1 160203057 160203333 + 2 NA intron (NR_123725, intron 4 of 4) (AT)n|Simple_repeat|Simple_repeat -2189 NM_003768 8682 Hs.517216 NM_003768 ENSG00000162734 PEA15 HMAT1|HUMMAT1H|MAT1|MAT1H|PEA-15|PED|PED-PEA15|PED/PEA15 proliferation and apoptosis adaptor protein 15 protein-coding 352-334 chr3 151993102 151993305 + 2 NA Intergenic LTR16|LTR|ERVL -65028 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 161-95 chr6 75310029 75310164 + 2 NA intron (NM_001300866, intron 5 of 6) L2c|LINE|L2 25082 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 273-93 chr12 12779172 12779439 + 2 NA intron (NM_001130415, intron 1 of 1) L2c|LINE|L2 -6354 NM_030817 81575 Hs.23388 NM_030817 ENSG00000178878 APOLD1 VERGE apolipoprotein L domain containing 1 protein-coding 437-212 chr5 24948231 24948641 + 2 NA Intergenic Intergenic -107853 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 382-145 chr17 52491092 52491352 + 2 NA intron (NR_146898, intron 1 of 3) MIR|SINE|MIR 100700 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 214-72 chr11 132929057 132929211 + 2 NA intron (NM_001319104, intron 1 of 6) L1MB3|LINE|L1 14503 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 158-120 chr8 129564550 129564692 + 2 NA intron (NR_130917, intron 1 of 3) L1MC5|LINE|L1 10397 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 688-89 chr5 120256938 120257325 + 2 NA Intergenic L1M4b|LINE|L1 -207147 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 360-46 chr10 81288389 81288683 + 2 NA Intergenic L1PA15|LINE|L1 -586658 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 180-54 chr16 7246354 7246484 + 2 NA intron (NM_018723, intron 4 of 15) L2a|LINE|L2 -86426 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 305-518 chr8 13768622 13768820 + 2 NA Intergenic Intergenic 139031 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 300-267 chr3 20823016 20823182 + 2 NA Intergenic Intergenic 480631 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 231-340 chr7 116026687 116026851 + 2 NA intron (NM_012252, intron 1 of 7) intron (NM_012252, intron 1 of 7) 3994 NM_001018058 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 358-24 chr1 214821374 214821689 + 2 NA Intergenic L1PB1|LINE|L1 -184011 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 249-80 chr11 107062072 107062243 + 2 NA Intergenic Intergenic -43681 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 444-159 chr3 145319123 145319442 + 2 NA Intergenic L1MA4A|LINE|L1 749903 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 274-142 chr15 64076490 64076702 + 2 NA intron (NM_001014812, intron 2 of 3) intron (NM_001014812, intron 2 of 3) 17242 NM_032231 84191 Hs.439548 NM_032231 ENSG00000166797 CIAO2A CIA2A|FAM96A cytosolic iron-sulfur assembly component 2A protein-coding 278-429 chr8 121678474 121678663 + 2 NA Intergenic L2b|LINE|L2 -37128 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 422-125 chr18 27430133 27430369 + 2 NA Intergenic L1M2a|LINE|L1 -87595 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 308-184 chr17 56612572 56612831 + 2 NA Intergenic Intergenic 19002 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 541-60 chr13 112064894 112065241 + 2 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -2082 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 249-40 chr10 30202049 30202267 + 2 NA Intergenic Intergenic -9694 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 368-144 chr14 62582003 62582278 + 2 NA Intergenic Intergenic -442167 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 586-153 chr8 82388296 82388733 + 2 NA Intergenic Intergenic -523590 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 286-98 chr12 105442354 105442541 + 2 NA Intergenic MER34A|LTR|ERV1 111756 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 369-103 chr14 32367230 32367489 + 2 NA intron (NM_004274, intron 1 of 13) intron (NM_004274, intron 1 of 13) 38061 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 184-113 chr3 77595093 77595257 + 2 NA exon (NM_002942, exon 18 of 26) exon (NM_002942, exon 18 of 26) 453788 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 223-152 chr2 62388465 62388660 + 2 NA Intergenic Intergenic 117633 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 427-21 chr10 42929908 42930253 + 2 NA Intergenic Intergenic 51427 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 636-4 chr1 68495783 68496312 + 2 NA promoter-TSS (NR_110671) promoter-TSS (NR_110671) -629 NR_110671 101927220 Hs.382856 NR_110671 ENSG00000234264 DEPDC1-AS1 - DEPDC1 antisense RNA 1 ncRNA 500-293 chr8 69227117 69227463 + 2 NA Intergenic L1MEc|LINE|L1 -123100 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 394-42 chr10 52540694 52541020 + 2 NA Intergenic Intergenic -70324 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 298-260 chr20 54135037 54135313 + 2 NA Intergenic L2a|LINE|L2 38811 NM_001128915 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 256-43 chr10 56777548 56777710 + 2 NA Intergenic Intergenic -416356 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 414-145 chr2 29960117 29960351 + 2 NA Intergenic L1P4|LINE|L1 -38648 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 226-113 chr16 51705901 51706065 + 2 NA Intergenic L1MEc|LINE|L1 -56536 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 379-215 chr3 61600565 61600801 + 2 NA intron (NM_002841, intron 1 of 29) AluJb|SINE|Alu 39112 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 538-51 chr12 19838967 19839401 + 2 NA Intergenic AluSp|SINE|Alu -175501 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 321-314 chr2 195875824 195876019 + 2 NA intron (NM_018897, intron 37 of 64) intron (NM_018897, intron 37 of 64) 192916 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 242-174 chr2 55280430 55280650 + 2 NA Intergenic Intergenic -1779 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 575-202 chr8 121353035 121353505 + 2 NA Intergenic Intergenic -286076 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 134-52 chr22 29509434 29509525 + 2 NA intron (NM_001002879, intron 19 of 19) intron (NM_001002879, intron 19 of 19) 29261 NM_021076 4744 Hs.198760 NM_021076 ENSG00000100285 NEFH CMT2CC|NFH neurofilament heavy protein-coding 412-208 chr3 39509867 39510162 + 2 NA intron (NR_103505, intron 4 of 6) L1ME1|LINE|L1 7948 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 226-222 chr3 55093363 55093531 + 2 NA Intergenic L1MB7|LINE|L1 -84725 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 368-47 chr10 34189384 34189600 + 2 NA intron (NM_001184789, intron 20 of 22) Charlie1a|DNA|hAT-Charlie -416812 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 646-80 chr22 28563019 28563629 + 2 NA intron (NM_001145418, intron 2 of 22) Charlie24|DNA|hAT-Charlie 103455 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 499-228 chr6 115864044 115864519 + 2 NA Intergenic Intergenic -174450 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 249-191 chr2 53386934 53387127 + 2 NA Intergenic Intergenic -380753 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 429 chr1 36730818 36731195 + 2 NA Intergenic Intergenic -247692 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 344-250 chr2 122600404 122600648 + 2 NA Intergenic Intergenic 472955 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 214-30 chr10 8607693 8607844 + 2 NA Intergenic L1ME1|LINE|L1 -13377 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 183-18 chr10 82592151 82592301 + 2 NA intron (NR_163253, intron 3 of 10) MLT1J1|LTR|ERVL-MaLR -359306 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 530-143 chr2 184970871 184971258 + 2 NA Intergenic Intergenic 196008 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 158-128 chrX 76346227 76346327 + 2 NA Intergenic L1PA12|LINE|L1 -81433 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 272-187 chr2 58014943 58015182 + 2 NA intron (NM_001288838, intron 1 of 15) MLT1D|LTR|ERVL-MaLR -31580 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 405-296 chr7 33666375 33666720 + 2 NA Intergenic L1MA9|LINE|L1 -238368 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 205-175 chr22 48209572 48209770 + 2 NA Intergenic CpG -64693 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 763-36 chr20 42092606 42093236 + 2 NA intron (NM_133170, intron 28 of 31) intron (NM_133170, intron 28 of 31) -474544 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 668-105 chr8 72594404 72595026 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 57490 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 501-222 chr5 160482442 160482804 + 2 NA intron (NR_132748, intron 1 of 1) L1MB8|LINE|L1 -2729 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 240-396 chr7 42470623 42470830 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -233517 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 241-149 chr18 1629852 1630019 + 2 NA Intergenic L1MA5A|LINE|L1 -270306 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 280-212 chr2 130740996 130741153 + 2 NA Intergenic Intergenic 12004 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 209-13 chr1 114135949 114136117 + 2 NA intron (NM_001366223, intron 3 of 7) intron (NM_001366223, intron 3 of 7) 16407 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 424-238 chr6 38750949 38751222 + 2 NA intron (NM_001371, intron 8 of 91) MLT1F2|LTR|ERVL-MaLR 35774 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 495-3 chr1 33870477 33870800 + 2 NA intron (NR_038372, intron 2 of 7) intron (NR_038372, intron 2 of 7) 1682 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 910-39 chr8 84657359 84658153 + 2 NA intron (NM_001354308, intron 3 of 9) HAL1|LINE|L1 -48171 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 737-67 chr5 53217554 53218128 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 107999 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 482-117 chr2 14422994 14423469 + 2 NA Intergenic LTR8B|LTR|ERV1 -22273 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 574-61 chr18 52190881 52191285 + 2 NA Intergenic Intergenic -149114 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 299-280 chr3 75034136 75034322 + 2 NA Intergenic Intergenic -180247 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 166-115 chr8 50753804 50753901 + 2 NA intron (NR_135797, intron 20 of 20) MIRc|SINE|MIR 589721 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 322-299 chr20 60835499 60835664 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -243483 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 675-61 chr3 115056508 115056932 + 2 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) 14694 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 201-79 chr14 72031137 72031306 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 97694 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 353-393 chr4 171965558 171965808 + 2 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -152076 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 393-369 chr8 131449580 131449804 + 2 NA Intergenic L1M1|LINE|L1 -408783 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 287-50 chr10 33835970 33836195 + 2 NA Intergenic MER110A|LTR|ERV1 -63402 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 510-62 chr12 99960728 99961107 + 2 NA intron (NM_152788, intron 1 of 25) intron (NM_152788, intron 1 of 25) 23737 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 212-121 chr17 30959256 30959451 + 2 NA TTS (NM_018404) TTS (NM_018404) -11686 NM_197939 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 190-91 chr2 80599094 80599255 + 2 NA intron (NM_001282599, intron 9 of 11) MER3|DNA|hAT-Charlie 285795 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 431-43 chr10 65419995 65420355 + 2 NA Intergenic MER4E|LTR|ERV1 -151250 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 209-82 chr13 94316865 94316995 + 2 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -128939 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 342-19 chr1 96133648 96133834 + 2 NA Intergenic Intergenic 141673 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 380-141 chr15 98210907 98211199 + 2 NA Intergenic L1MEf|LINE|L1 120505 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 231-229 chr3 84609095 84609288 + 2 NA Intergenic Intergenic 260384 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 246-342 chr5 171621222 171621432 + 2 NA Intergenic Intergenic -164545 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 339-118 chr12 3592150 3592378 + 2 NA exon (NM_001256536, exon 9 of 10) exon (NM_001256536, exon 9 of 10) -99445 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 268-212 chr2 155307752 155308016 + 2 NA Intergenic L3|LINE|CR1 609189 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 590-61 chr16 24405452 24405951 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -133865 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 247-30 chr1 247166701 247166935 + 2 NA intron (NM_003431, intron 1 of 3) L1M3|LINE|L1 5199 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 327-479 chr8 43124917 43125145 + 2 NA Intergenic LTR76|LTR|ERV1 -15433 NM_001363227 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|RP73|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 256-249 chr3 10628636 10628831 + 2 NA Intergenic Intergenic -1926 NR_046766 100874325 Hs.143004 NR_046766 ENSG00000224771 ATP2B2-IT2 - ATP2B2 intronic transcript 2 ncRNA 445-279 chr8 128427923 128428285 + 2 NA non-coding (NR_121672, exon 3 of 8) non-coding (NR_121672, exon 3 of 8) 136575 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 185-110 chr2 182757339 182757517 + 2 NA intron (NR_073367, intron 17 of 22) intron (NR_073367, intron 17 of 22) 41171 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 585-161 chr8 110314313 110314764 + 2 NA Intergenic L1MA8|LINE|L1 -338767 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 252-83 chr12 8116420 8116556 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -7144 NM_016184 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 1103-5 chr15 67909955 67910787 + 2 NA Intergenic MER21C|LTR|ERVL -70326 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 230-265 chr4 67045806 67045954 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 376120 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 321-342 chr21 20072013 20072232 + 2 NA Intergenic Intergenic -172367 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 301-236 chr2 187817379 187817547 + 2 NA Intergenic LTR27E|LTR|ERV1 -262958 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 519-26 chr10 66492121 66492525 + 2 NA intron (NM_001127384, intron 11 of 17) AluJr|SINE|Alu -433713 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 298-509 chrX 42445955 42446164 + 2 NA Intergenic L1PB1|LINE|L1 332104 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 347-442 chr6 136800653 136800926 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -8312 NM_005923 4217 Hs.186486 NM_005923 ENSG00000197442 MAP3K5 ASK1|MAPKKK5|MEKK5 mitogen-activated protein kinase kinase kinase 5 protein-coding 493-207 chr3 101511367 101511734 + 2 NA intron (NM_020654, intron 1 of 23) intron (NM_020654, intron 1 of 23) 1662 NM_001077203 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 324-305 chr20 6872574 6872872 + 2 NA Intergenic Intergenic 105037 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 377-323 chr5 53388007 53388231 + 2 NA Intergenic L1MCa|LINE|L1 -92510 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 255-338 chr5 117996142 117996313 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) 265866 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 221-143 chr2 99382756 99382949 + 2 NA exon (NM_015904, exon 14 of 24) exon (NM_015904, exon 14 of 24) 45463 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 486-75 chr14 53287073 53287385 + 2 NA Intergenic L1MD1|LINE|L1 133875 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 158-68 chr20 33128301 33128410 + 2 NA Intergenic Intergenic -33415 NM_001319164 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 321-311 chr2 180222255 180222438 + 2 NA Intergenic Intergenic -215049 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 307-185 chr17 52509660 52509842 + 2 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 119229 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 486-215 chr3 175945845 175946254 + 2 NA Intergenic L1MC3|LINE|L1 -169716 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 284-449 chr9 135562659 135562801 + 2 NA intron (NM_001018049, intron 2 of 6) intron (NM_001018049, intron 2 of 6) 974 NM_002571 5047 Hs.532325 NM_002571 ENSG00000122133 PAEP GD|GdA|GdF|GdS|PAEG|PEP|PP14|ZIF-1 progestagen associated endometrial protein protein-coding 341-512 chr8 32953486 32953668 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 231742 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 401-253 chr5 26148012 26148350 + 2 NA Intergenic L1MA9|LINE|L1 890405 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 229-170 chr2 22571056 22571255 + 2 NA Intergenic Intergenic 34676 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 226-235 chr3 143525086 143525246 + 2 NA intron (NM_173653, intron 9 of 15) intron (NM_173653, intron 9 of 15) 182920 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 613-69 chr2 228618436 228618881 + 2 NA Intergenic MLT2D|LTR|ERVL -7263 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 339-362 chr3 73901908 73902178 + 2 NA Intergenic Intergenic 92799 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 326-266 chr2 140097544 140097770 + 2 NA Intergenic Intergenic 489028 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 519-149 chr3 130294491 130294809 + 2 NA Intergenic Intergenic -50866 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 323-168 chr15 96212402 96212652 + 2 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -84686 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 439-264 chr7 36920846 36921148 + 2 NA intron (NM_001206480, intron 16 of 21) MLT1A0|LTR|ERVL-MaLR -1565 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 490-23 chr1 165290284 165290617 + 2 NA intron (NM_177398, intron 3 of 8) MLT1D|LTR|ERVL-MaLR 65791 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 496-65 chr13 56452061 56452386 + 2 NA Intergenic L1PB3|LINE|L1 -688695 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 355-49 chr10 44415794 44416070 + 2 NA Intergenic MER65B|LTR|ERV1 -30835 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 258-436 chrX 63339723 63339954 + 2 NA Intergenic L1M4|LINE|L1 11494 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 281-14 chr1 157739325 157739471 + 2 NA Intergenic L1P4a|LINE|L1 37734 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 345-143 chr14 32909987 32910194 + 2 NA Intergenic L3|LINE|CR1 -28789 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 412-14 chr1 184302917 184303251 + 2 NA Intergenic L1MEg|LINE|L1 -83945 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 328-450 chr5 54407898 54408174 + 2 NA intron (NR_126379, intron 3 of 4) L1MC5a|LINE|L1 -47663 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 236-166 chr2 65803761 65803928 + 2 NA Intergenic L1MEi|LINE|L1 -371245 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 184-169 chr8 82187674 82187850 + 2 NA Intergenic LTR88b|LTR|Gypsy? -345476 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 417-24 chr10 12415830 12416065 + 2 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) 26965 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 212-56 chr11 15288069 15288274 + 2 NA Intergenic MIR|SINE|MIR 139069 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 217-357 chr7 132845959 132846143 + 2 NA intron (NR_133671, intron 6 of 10) MLT1H|LTR|ERVL-MaLR 87081 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 325-435 chr5 36336495 36336793 + 2 NA Intergenic Intergenic -34742 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 335-515 chr7 113486969 113487201 + 2 NA Intergenic Intergenic -368503 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 178-35 chr12 64297222 64297368 + 2 NA intron (NM_001099676, intron 4 of 10) intron (NM_001099676, intron 4 of 10) -74999 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 389-142 chr18 12475911 12476234 + 2 NA intron (NM_020148, intron 9 of 15) intron (NM_020148, intron 9 of 15) 43298 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 297-265 chr20 40880995 40881249 + 2 NA Intergenic CR1-3_Croc|LINE|CR1 -99591 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 339-152 chr14 47889180 47889458 + 2 NA Intergenic Intergenic -94305 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 255-243 chr21 44670469 44670657 + 2 NA intron (NM_144991, intron 1 of 11) L1MA4A|LINE|L1 -3636 NM_181684 353323 Hs.567902 NM_181684 ENSG00000221864 KRTAP12-2 KAP12.2|KRTAP12.2 keratin associated protein 12-2 protein-coding 338-396 chr4 131144484 131144700 + 2 NA Intergenic Intergenic -620246 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 215-116 chr17 70162429 70162588 + 2 NA Intergenic L1ME4a|LINE|L1 6894 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 225-78 chr12 124046652 124046804 + 2 NA intron (NM_001347902, intron 2 of 4) MADE2|DNA|TcMar-Mariner 73513 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 746-21 chr12 125221981 125222649 + 2 NA intron (NM_001366854, intron 1 of 8) L4_A_Mam|LINE|RTE-X 35929 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 341-168 chr15 61418788 61418980 + 2 NA Intergenic L2c|LINE|L2 -189582 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 206-127 chr2 139261546 139261720 + 2 NA Intergenic Intergenic 364309 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 321-385 chr3 120039677 120039865 + 2 NA intron (NM_002093, intron 1 of 11) LTR10G|LTR|ERV1 44877 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 319-42 chr10 7070690 7070978 + 2 NA Intergenic Intergenic 115950 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 213-166 chr21 30307589 30307772 + 2 NA Intergenic Intergenic 12635 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 325-2 chr1 5208506 5208765 + 2 NA Intergenic L1MEf|LINE|L1 554026 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 237-115 chr15 27474262 27474459 + 2 NA intron (NM_001270873, intron 5 of 5) A-rich|Low_complexity|Low_complexity -313041 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 422-134 chr19 30890568 30890912 + 2 NA Intergenic Intergenic -276770 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 387-287 chr5 81921869 81922158 + 2 NA Intergenic Intergenic -50010 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 573-63 chr14 55205107 55205642 + 2 NA Intergenic AluJr|SINE|Alu -13789 NM_001146015 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 430-221 chr4 108882628 108882955 + 2 NA intron (NM_198721, intron 18 of 36) intron (NM_198721, intron 18 of 36) -119738 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 339-27 chr1 158248789 158249060 + 2 NA intron (NM_001320652, intron 1 of 5) intron (NM_001320652, intron 1 of 5) 588 NM_001320652 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 339-67 chr10 67950465 67950750 + 2 NA intron (NM_022079, intron 20 of 25) L1MC5|LINE|L1 59205 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 310-220 chr2 6509319 6509573 + 2 NA Intergenic Intergenic 124341 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 333-126 chr13 21404839 21405166 + 2 NA intron (NR_104486, intron 4 of 14) intron (NR_104486, intron 4 of 14) 54301 NR_104487 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 315-112 chr12 128410184 128410408 + 2 NA intron (NM_001136103, intron 1 of 8) L1MC4a|LINE|L1 116204 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 152-26 chr14 67228277 67228365 + 2 NA intron (NM_173526, intron 8 of 8) intron (NM_173526, intron 8 of 8) -13114 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 438-196 chr4 79083398 79083680 + 2 NA intron (NR_038342, intron 2 of 5) intron (NR_038342, intron 2 of 5) 111791 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 327-304 chr21 15434376 15434541 + 2 NA Intergenic LTR48|LTR|ERV1 -295476 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 280-129 chr14 87689482 87689709 + 2 NA Intergenic Intergenic -34301 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 185-69 chr15 92922321 92922440 + 2 NA intron (NM_001042572, intron 2 of 12) intron (NM_001042572, intron 2 of 12) 17981 NR_036136 100422995 NR_036136 ENSG00000284324 MIR3175 mir-3175 microRNA 3175 ncRNA 309-391 chr4 60300191 60300351 + 2 NA Intergenic L1MB8|LINE|L1 -622348 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 298-56 chr10 89836106 89836289 + 2 NA intron (NR_038382, intron 3 of 3) intron (NR_038382, intron 3 of 3) 6704 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 391-148 chr18 50581132 50581399 + 2 NA intron (NM_001292039, intron 1 of 4) MLT1F1|LTR|ERVL-MaLR 21178 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 341-2 chr1 19951630 19951921 + 2 NA Intergenic AluJo|SINE|Alu 27884 NM_001161729 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 196-218 chr5 157873965 157874082 + 2 NA Intergenic AluJo|SINE|Alu -14878 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 320-153 chr14 59990850 59991036 + 2 NA intron (NR_075071, intron 17 of 32) HAL1M8|LINE|L1 71230 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 154-27 chr12 122766902 122767008 + 2 NA intron (NM_003677, intron 5 of 7) intron (NM_003677, intron 5 of 7) -7617 NR_027918 84660 Hs.592008 NM_032573 ENSG00000130783 CCDC62 CT109|ERAP75|TSP-NY coiled-coil domain containing 62 protein-coding 286-470 chr8 139785127 139785359 + 2 NA intron (NM_001160372, intron 21 of 22) L1ME1|LINE|L1 -82120 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 361-370 chr5 122547386 122547651 + 2 NA Intergenic Intergenic 37082 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 368-49 chr10 42442626 42442870 + 2 NA intron (NR_103829, intron 3 of 8) L1PB1|LINE|L1 29492 NR_103829 414194 Hs.568048 NR_103829 ENSG00000182632 CCNYL2 C10orf21|CCNYL2P|bA178A10.2 cyclin Y like 2 (pseudogene) pseudo 447-82 chr15 80331193 80331490 + 2 NA intron (NR_033833, intron 1 of 2) intron (NR_033833, intron 1 of 2) 10464 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 361-250 chr2 240762599 240762849 + 2 NA exon (NM_001244008, exon 23 of 49) exon (NM_001244008, exon 23 of 49) 57495 NM_001330290 547 Hs.516802 NM_004321 ENSG00000130294 KIF1A ATSV|C2orf20|HSN2C|MRD9|SPG30|UNC104 kinesin family member 1A protein-coding 378-143 chr14 78531403 78531775 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 127870 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 454-38 chr10 106488180 106488576 + 2 NA Intergenic Intergenic 348213 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 342-242 chr2 80892984 80893254 + 2 NA Intergenic L2a|LINE|L2 573827 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 558-18 chr10 20961250 20961748 + 2 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -63897 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 154-7 chr1 112593263 112593381 + 2 NA intron (NM_017744, intron 5 of 14) intron (NM_017744, intron 5 of 14) 25819 NM_001308264 54879 Hs.201921 NM_017744 ENSG00000007341 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 650-116 chr7 40280874 40281410 + 2 NA intron (NM_024728, intron 8 of 14) ORSL|DNA|hAT-Tip100 146166 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 237-360 chr7 89118246 89118452 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -322612 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 398-97 chr14 41091050 41091337 + 2 NA intron (NR_109758, intron 3 of 3) MER58B|DNA|hAT-Charlie 136482 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 455-190 chr4 104018476 104018880 + 2 NA Intergenic Intergenic -298693 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 398-369 chr8 124925138 124925444 + 2 NA Intergenic Intergenic -16717 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 410-221 chr4 91421562 91421870 + 2 NA intron (NM_001145065, intron 10 of 10) L1MA9|LINE|L1 855586 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 217-186 chr2 133207381 133207555 + 2 NA intron (NM_207481, intron 5 of 17) intron (NM_207481, intron 5 of 17) -58727 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 732-71 chr4 64232452 64232941 + 2 NA Intergenic LTR77|LTR|ERV1 176754 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 221-104 chr16 52659338 52659544 + 2 NA Intergenic L1MA5A|LINE|L1 -52466 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 513-37 chr10 115746163 115746523 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 448446 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 336-523 chr7 75708473 75708743 + 2 NA intron (NM_005338, intron 1 of 30) L1M3|LINE|L1 30333 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 558-185 chr6 41208339 41208730 + 2 NA TTS (NR_027256) TTS (NR_027256) -7385 NM_024807 79865 Hs.164797 NM_024807 ENSG00000112195 TREML2 C6orf76|TLT-2|TLT2|dJ238O23.1 triggering receptor expressed on myeloid cells like 2 protein-coding 485-272 chr7 104255500 104255940 + 2 NA Intergenic L2a|LINE|L2 -47673 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 443-288 chr8 51068046 51068374 + 2 NA Intergenic LTR55|LTR|ERVL? 741235 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 273-162 chr16 65984566 65984750 + 2 NA Intergenic Intergenic -382033 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 209-12 chr1 110989147 110989321 + 2 NA Intergenic L1M4c|LINE|L1 -25290 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 480-221 chr4 135764426 135764890 + 2 NA Intergenic Intergenic 123435 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 225-228 chr3 148511734 148511921 + 2 NA Intergenic Intergenic -186044 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 286-383 chr6 38908022 38908269 + 2 NA intron (NM_001371, intron 63 of 91) intron (NM_001371, intron 63 of 91) 44962 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 282-3 chr1 45232465 45232657 + 2 NA Intergenic Intergenic -25956 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 260-472 chrX 98890523 98890695 + 2 NA Intergenic Intergenic -1326074 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 610-144 chr6 48561836 48562249 + 2 NA Intergenic MIRb|SINE|MIR -493353 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 467-245 chr6 50979172 50979484 + 2 NA Intergenic Intergenic 160457 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 184-58 chr14 78187295 78187429 + 2 NA intron (NR_073547, intron 1 of 20) MIRb|SINE|MIR 16989 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 367-54 chr10 82084417 82084623 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 148400 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 404-103 chr14 72164516 72164851 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 231156 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 223-231 chr3 185874675 185874848 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -49719 NM_006548 10644 Hs.35354 NM_006548 ENSG00000073792 IGF2BP2 IMP-2|IMP2|VICKZ2 insulin like growth factor 2 mRNA binding protein 2 protein-coding 485-291 chr8 111316339 111316746 + 2 NA Intergenic Intergenic -60097 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 673-55 chr2 61728223 61728622 + 2 NA Intergenic Intergenic 125638 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 502-215 chr5 28188456 28188942 + 2 NA Intergenic AluY|SINE|Alu 98966 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 268-398 chr8 74270690 74270864 + 2 NA intron (NM_020647, intron 2 of 5) intron (NM_020647, intron 2 of 5) 50584 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 352-91 chr12 2592682 2592887 + 2 NA intron (NM_199460, intron 18 of 49).2 intron (NM_199460, intron 18 of 49).2 79436 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 662-103 chr8 130799311 130799649 + 2 NA intron (NM_001115, intron 15 of 17) intron (NM_001115, intron 15 of 17) 241429 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 394-221 chr3 105919730 105920110 + 2 NA Intergenic L1M3b|LINE|L1 -50519 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 288-169 chr19 37363461 37363662 + 2 NA exon (NM_001329761, exon 5 of 5) exon (NM_001329761, exon 5 of 5) -7538 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 735-78 chr7 153561341 153561735 + 2 NA Intergenic Intergenic -149304 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 372-162 chr15 54772017 54772205 + 2 NA Intergenic Intergenic -284636 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 289-225 chr2 74730197 74730427 + 2 NA Intergenic L1MA4|LINE|L1 76065 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 436-64 chr12 43382884 43383196 + 2 NA intron (NM_025003, intron 31 of 38) L1ME1|LINE|L1 169163 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 417-4 chr1 50270118 50270428 + 2 NA Intergenic L1MEc|LINE|L1 153170 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 544-57 chr12 91028799 91029242 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -24048 NM_004950 1833 Hs.435680 NM_004950 ENSG00000083782 EPYC DSPG3|PGLB|Pg-Lb|SLRR3B epiphycan protein-coding 324-47 chr10 12967277 12967530 + 2 NA intron (NM_001282658, intron 6 of 6) L1M1|LINE|L1 34310 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 370-104 chr11 129643441 129643712 + 2 NA Intergenic Intergenic -26307 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 197-8 chr1 72250752 72250911 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 31708 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 381-159 chr18 76594891 76595205 + 2 NA Intergenic L1MA2|LINE|L1 -24729 NR_120419 400660 Hs.131718 NR_120419 ENSG00000266256 LINC00683 - long intergenic non-protein coding RNA 683 ncRNA 578-184 chr8 127579977 127580360 + 2 NA Intergenic MIR|SINE|MIR -98029 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 402-95 chr15 58295149 58295450 + 2 NA Intergenic L1ME3D|LINE|L1 -136692 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 314-383 chr3 108305604 108305822 + 2 NA intron (NM_007072, intron 1 of 9) intron (NM_007072, intron 1 of 9) 3228 NM_007072 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 157-102 chr5 12411648 12411764 + 2 NA Intergenic L1MA2|LINE|L1 -163151 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 200-183 chr3 174392652 174392845 + 2 NA Intergenic MER41D|LTR|ERV1 -466586 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 332-273 chr2 186672545 186672821 + 2 NA intron (NM_001145000, intron 24 of 27) L1MB7|LINE|L1 -21377 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 626-144 chr8 121601686 121602109 + 2 NA Intergenic L2a|LINE|L2 -37449 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 339-364 chr3 79793423 79793615 + 2 NA Intergenic Intergenic -25521 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 297-397 chr6 45746427 45746641 + 2 NA Intergenic Intergenic 191063 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 402-222 chr3 171852627 171852993 + 2 NA intron (NM_001164436, intron 2 of 4) intron (NM_001164436, intron 2 of 4) 9461 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 217-151 chr17 55793580 55793756 + 2 NA intron (NM_001330378, intron 5 of 5) L2a|LINE|L2 42563 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 382-430 chr9 4540088 4540385 + 2 NA intron (NM_004170, intron 1 of 11) LTR1D1|LTR|ERV1 49768 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 423-9 chr1 97388440 97388784 + 2 NA intron (NM_000110, intron 14 of 22) L2a|LINE|L2 292689 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 392-186 chr22 26465122 26465414 + 2 NA intron (NR_146315, intron 11 of 14) MIR|SINE|MIR 14220 NR_073136 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 271-307 chr4 64738897 64739096 + 2 NA Intergenic Intergenic 265504 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 205-83 chr14 54708517 54708679 + 2 NA intron (NM_001161576, intron 2 of 10) L2a|LINE|L2 -46235 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 240-443 chr9 123229778 123229930 + 2 NA intron (NR_033234, intron 1 of 18) L2a|LINE|L2 38732 NR_033234 55342 Hs.287659 NM_018387 ENSG00000165209 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding 617-15 chr10 104804626 104805011 + 2 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -138602 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 361-54 chr10 97967406 97967649 + 2 NA intron (NM_001206528, intron 2 of 14) L1MC3|LINE|L1 63094 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 293-424 chr8 21463076 21463296 + 2 NA Intergenic Intergenic 164947 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 294-297 chr3 80556581 80556811 + 2 NA Intergenic Intergenic -208201 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 692-42 chr18 38437097 38437658 + 2 NA Intergenic Intergenic 780242 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 838-17 chr19 37716072 37716771 + 2 NA intron (NM_032689, intron 1 of 4) LTR54B|LTR|ERV1 2767 NM_001172677 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 389-233 chr3 94898535 94898876 + 2 NA Intergenic Intergenic -39558 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 284-164 chr17 69482699 69482865 + 2 NA intron (NR_145982, intron 1 of 1) L1ME4b|LINE|L1 2750 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 312-254 chr2 116258045 116258209 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 914312 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 416-141 chr17 55673054 55673287 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 49694 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 237-120 chr15 64199360 64199561 + 2 NA intron (NM_001329605, intron 10 of 12) intron (NM_001329605, intron 10 of 12) -36305 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 325-513 chr7 87616113 87616295 + 2 NA intron (NM_001348945, intron 2 of 31) intron (NM_001348945, intron 2 of 31) -12194 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 221-32 chr10 32433060 32433201 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 12926 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 360-271 chr20 60945240 60945457 + 2 NA Intergenic Intergenic -133716 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 535-140 chr2 178815197 178815648 + 2 NA Intergenic Intergenic -7999 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 330-419 chr5 45604891 45605137 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 91366 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 368-336 chr4 82072604 82072872 + 2 NA Intergenic Intergenic 301253 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 407-189 chr3 25219983 25220321 + 2 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -120650 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 447-76 chr14 61870826 61871162 + 2 NA intron (NM_001367656, intron 1 of 7) L1ME1|LINE|L1 -56701 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 137-21 chr12 115226477 115226595 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -542361 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 298-479 chr8 127414488 127414762 + 2 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) -1200 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 376-191 chr2 101556329 101556556 + 2 NA Intergenic Intergenic -81330 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 200-202 chr5 17748425 17748601 + 2 NA Intergenic L2a|LINE|L2 -58761 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 310-411 chr5 89334334 89334531 + 2 NA intron (NR_136219, intron 7 of 9) L1MEi|LINE|L1 -430327 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 611-106 chr4 46635216 46635652 + 2 NA Intergenic L1PA15|LINE|L1 -245306 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 239-167 chr2 52049674 52049898 + 2 NA intron (NR_135237, intron 7 of 10) L1M4c|LINE|L1 -320862 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 518-290 chr8 20750907 20751292 + 2 NA Intergenic Intergenic -136173 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 238-358 chr7 49943956 49944120 + 2 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 149208 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 384-375 chr8 107289625 107289939 + 2 NA intron (NM_001199859, intron 6 of 8) intron (NM_001199859, intron 6 of 8) 46733 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 471-15 chr1 217959405 217959685 + 2 NA Intergenic L1MC1|LINE|L1 66645 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 245-171 chr18 77823569 77823768 + 2 NA Intergenic Intergenic 170059 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 663-6 chr1 215704868 215705459 + 2 NA intron (NM_206933, intron 61 of 71) Kanga1d|DNA|TcMar-Tc2 137859 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 359-172 chr16 64587540 64587755 + 2 NA Intergenic Intergenic 534416 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 256-411 chr8 65458781 65458982 + 2 NA Intergenic Intergenic 103785 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 298-112 chr14 35614091 35614359 + 2 NA intron (NM_014990, intron 34 of 40) L1MB8|LINE|L1 80061 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 359-455 chr7 70948214 70948498 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -183788 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 297-236 chr2 166301431 166301587 + 2 NA non-coding (NR_110260, exon 12 of 12) non-coding (NR_110260, exon 12 of 12) 74435 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 497-255 chr7 7282712 7283131 + 2 NA Intergenic L1MA9|LINE|L1 27767 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 340-545 chr8 109947814 109948022 + 2 NA Intergenic L1MC3|LINE|L1 27853 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 257-125 chr15 59682644 59682813 + 2 NA intron (NM_001368059, intron 1 of 8) intron (NM_001368059, intron 1 of 8) 6198 NM_001320675 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 291-190 chr18 42221529 42221727 + 2 NA intron (NR_046174, intron 2 of 9) L1MC3|LINE|L1 34960 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 247-319 chr5 30697071 30697232 + 2 NA Intergenic L1MA3|LINE|L1 -496535 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 419-232 chr5 53690391 53690773 + 2 NA Intergenic L1M2|LINE|L1 129100 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 307-183 chr17 31644348 31644526 + 2 NA Intergenic Intergenic 69026 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 336-131 chr12 43551310 43551515 + 2 NA intron (NM_025003, intron 1 of 38) CpG 791 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 234-147 chr18 66843786 66843940 + 2 NA Intergenic L1PA16|LINE|L1 -237721 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 198-202 chr5 156117386 156117518 + 2 NA Intergenic Intergenic -209305 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 177-49 chr14 47271968 47272079 + 2 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 71223 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 204-155 chr2 179107215 179107379 + 2 NA 3' UTR (NM_178123, exon 18 of 18) 3' UTR (NM_178123, exon 18 of 18) -57160 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 303-172 chr18 5119700 5119873 + 2 NA Intergenic L1MA3|LINE|L1 38604 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 750-27 chr19 44050482 44051128 + 2 NA Intergenic LTR36|LTR|ERV1 -1231 NM_013361 7766 Hs.720813 NM_013361 ENSG00000178386 ZNF223 - zinc finger protein 223 protein-coding 232-321 chr6 23780792 23780967 + 2 NA Intergenic Intergenic -345336 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 256-400 chr7 129641164 129641352 + 2 NA intron (NM_001040110, intron 1 of 10) intron (NM_001040110, intron 1 of 10) 11180 NM_001040110 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 767-14 chr15 75971248 75971844 + 2 NA intron (NM_138573, intron 3 of 5) LTR37-int|LTR|ERV1 40878 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 176-6 chr1 181273509 181273611 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 37172 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 528-149 chr21 14220739 14221250 + 2 NA intron (NR_135310, intron 2 of 4) intron (NR_135310, intron 2 of 4) 4837 NR_135308 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 289-339 chr4 64660171 64660366 + 2 NA Intergenic Intergenic -250808 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 408-293 chr6 61553018 61553287 + 2 NA intron (NR_146870, intron 14 of 15) L1PA15|LINE|L1 -20978 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 473-55 chr12 30092915 30093332 + 2 NA Intergenic Intergenic -308364 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 249-114 chr14 43790120 43790352 + 2 NA Intergenic Intergenic 717047 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 316-216 chr17 76646201 76646384 + 2 NA Intergenic Intergenic -2535 NM_001289107 55808 Hs.105352 NM_018414 ENSG00000070526 ST6GALNAC1 HSY11339|SIAT7A|ST6GalNAcI|STYI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 protein-coding 276-345 chr4 81273632 81273870 + 2 NA Intergenic Intergenic -58529 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 406-135 chr2 28825040 28825365 + 2 NA intron (NM_001008779, intron 3 of 4) intron (NM_001008779, intron 3 of 4) 9205 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 309-147 chr14 48870199 48870468 + 2 NA Intergenic Intergenic 716047 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 398-13 chr1 113555434 113555776 + 2 NA intron (NM_001142782, intron 2 of 20) L1MEc|LINE|L1 165090 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 384-25 chr1 208774374 208774711 + 2 NA Intergenic Intergenic 45854 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 381-144 chr17 71926562 71926864 + 2 NA Intergenic Intergenic 99266 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 231-255 chr4 66386128 66386278 + 2 NA Intergenic L1PA8A|LINE|L1 109379 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 364-73 chr10 108041854 108042181 + 2 NA intron (NR_125760, intron 2 of 4) intron (NR_125760, intron 2 of 4) 27276 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 583-38 chr11 124344735 124345225 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -24783 NM_001002918 283160 Hs.504212 NM_001002918 ENSG00000279116 OR8D2 JCG2 olfactory receptor family 8 subfamily D member 2 (gene/pseudogene) protein-coding 641-112 chr8 109113933 109114384 + 2 NA intron (NM_003301, intron 2 of 2) intron (NM_003301, intron 2 of 2) 27530 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 185-184 chr6 96868675 96868814 + 2 NA Intergenic Intergenic 29147 NM_014165 29078 Hs.512144 NM_014165 ENSG00000123545 NDUFAF4 C6orf66|HRPAP20|HSPC125|MC1DN15|My013|bA22L21.1 NADH:ubiquinone oxidoreductase complex assembly factor 4 protein-coding 314-296 chr2 116474417 116474694 + 2 NA Intergenic LTR39-int|LTR|ERV1 1130740 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 490-99 chr15 71169141 71169475 + 2 NA intron (NR_120349, intron 1 of 1) L1ME3|LINE|L1 19751 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 338-58 chr10 52666121 52666377 + 2 NA intron (NR_155748, intron 1 of 2) MLT1C|LTR|ERVL-MaLR 89155 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 170-128 chr7 3020010 3020168 + 2 NA intron (NM_001324281, intron 1 of 25) MLT1A0|LTR|ERVL-MaLR 23778 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 332-592 chrX 91078904 91079161 + 2 NA Intergenic Intergenic -355807 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 320-393 chr4 75097574 75097736 + 2 NA Intergenic L1M1|LINE|L1 -12947 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 301-423 chr7 51820250 51820477 + 2 NA Intergenic Intergenic -427107 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 266-306 chr4 152159250 152159405 + 2 NA Intergenic Intergenic 58509 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 340-56 chr10 80260024 80260326 + 2 NA Intergenic MIRb|SINE|MIR 12417 NR_136612 100130698 Hs.447456 NR_136612 LOC100130698 - uncharacterized LOC100130698 ncRNA 526-177 chr3 162331085 162331415 + 2 NA Intergenic L1M4|LINE|L1 834442 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 327-42 chr10 33539695 33539968 + 2 NA Intergenic L1MEf|LINE|L1 -204926 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 206-270 chr8 122100657 122100854 + 2 NA Intergenic MIRc|SINE|MIR -459315 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 321-154 chr13 47401070 47401334 + 2 NA Intergenic Intergenic -504126 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 375-325 chr5 82000235 82000569 + 2 NA intron (NM_031482, intron 2 of 7) L1PA15|LINE|L1 28379 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 561-28 chr10 112618279 112618682 + 2 NA intron (NM_001365712, intron 6 of 8) intron (NM_001365712, intron 6 of 8) -15690 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 429-47 chr11 6739877 6740269 + 2 NA Intergenic Intergenic -18194 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 329-573 chr8 83112295 83112514 + 2 NA Intergenic Intergenic 200300 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 393-334 chr7 81408664 81409019 + 2 NA Intergenic MER57E1|LTR|ERV1 152978 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 240-179 chr17 69965550 69965744 + 2 NA intron (NR_110875, intron 2 of 4) MLT1J1-int|LTR|ERVL-MaLR 3940 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 247-229 chr20 12116463 12116673 + 2 NA Intergenic Intergenic 198675 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 244-114 chr16 5689546 5689722 + 2 NA Intergenic Intergenic 57167 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 764-15 chr11 113703727 113704247 + 2 NA intron (NM_001288752, intron 1 of 10) intron (NM_001288752, intron 1 of 10) 2321 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 355-274 chr2 234664876 234665175 + 2 NA Intergenic Intergenic -17643 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 334-557 chr8 142322046 142322373 + 2 NA intron (NM_001366903, intron 6 of 9) L1MD|LINE|L1 80973 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 463-58 chr11 75386972 75387384 + 2 NA Intergenic Intergenic -12313 NM_001260507 6188 Hs.546286 NM_001005 ENSG00000149273 RPS3 S3 ribosomal protein S3 protein-coding 284-365 chr7 3094287 3094490 + 2 NA Intergenic MIRb|SINE|MIR -50521 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 126-30 chr18 47595587 47595699 + 2 NA Intergenic Intergenic 215147 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 392-17 chr1 239839342 239839696 + 2 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 60353 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 202-114 chr2 29533231 29533400 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -57938 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 375-323 chr5 64038252 64038563 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -76115 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 212-246 chr4 141489699 141489825 + 2 NA Intergenic Intergenic -146821 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 499-51 chr12 13904535 13904874 + 2 NA intron (NM_000834, intron 1 of 12) L1ME3E|LINE|L1 75652 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 165-6 chr10 16326358 16326514 + 2 NA Intergenic Intergenic -110507 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 327-529 chr9 103481182 103481425 + 2 NA Intergenic Intergenic -156270 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 329-427 chr4 153992671 153992963 + 2 NA Intergenic L1MA6|LINE|L1 -203734 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 318-421 chr4 162978618 162978912 + 2 NA Intergenic Intergenic 114863 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 290-351 chr5 93491576 93491782 + 2 NA intron (NR_021491, intron 4 of 5) MLT2B3|LTR|ERVL 79664 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 319-61 chr10 58882797 58883101 + 2 NA Intergenic L1MA5|LINE|L1 -116569 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 562-94 chr2 6136196 6136566 + 2 NA Intergenic Intergenic 154403 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 339-158 chr14 56725133 56725415 + 2 NA Intergenic L2b|LINE|L2 80393 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 181-153 chr8 23781162 23781317 + 2 NA Intergenic MLT2B3|LTR|ERVL 73567 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 335-86 chr11 25933395 25933667 + 2 NA Intergenic Intergenic -255592 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 386-196 chr2 211417510 211417794 + 2 NA intron (NM_005235, intron 25 of 27) intron (NM_005235, intron 25 of 27) 800081 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 227-13 chr1 107239839 107240017 + 2 NA intron (NM_001113226, intron 1 of 6) MER3|DNA|hAT-Charlie 91859 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 338-156 chr13 105388517 105388785 + 2 NA Intergenic Intergenic -77216 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 867-36 chr5 24089408 24090105 + 2 NA intron (NR_131245, intron 4 of 4) THE1D|LTR|ERVL-MaLR 138408 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 464-45 chr12 124208755 124209142 + 2 NA intron (NM_001347902, intron 3 of 4) Charlie1b|DNA|hAT-Charlie -80216 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 536-15 chr1 158376292 158376664 + 2 NA Intergenic L1MA4A|LINE|L1 22584 NM_030893 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 328-135 chr14 22289001 22289254 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 143626 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 531-97 chr19 37579141 37579587 + 2 NA intron (NR_038250, intron 2 of 2) L1M2|LINE|L1 15382 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 285-218 chr2 157623706 157623981 + 2 NA intron (NM_145259, intron 1 of 8) L1MA1|LINE|L1 5021 NM_145259 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 203-143 chr3 34443535 34443669 + 2 NA Intergenic L1MA9|LINE|L1 644972 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 530-285 chrX 67982581 67982943 + 2 NA Intergenic L1PB3|LINE|L1 438139 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 576-112 chr3 177778941 177779302 + 2 NA Intergenic L1MC4|LINE|L1 -37744 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 530-128 chr2 72166129 72166481 + 2 NA Intergenic L1MB7|LINE|L1 -18443 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 803-35 chr4 85390225 85390748 + 2 NA Intergenic Intergenic -84664 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 272-234 chr2 236153713 236153879 + 2 NA Intergenic L2a|LINE|L2 14590 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 592-29 chr11 117580604 117581124 + 2 NA intron (NM_020693, intron 3 of 32) intron (NM_020693, intron 3 of 32) 216352 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 271-234 chr20 55659154 55659416 + 2 NA Intergenic L2a|LINE|L2 -232088 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 271-120 chr14 20753381 20753574 + 2 NA Intergenic MER41-int|LTR|ERV1 7590 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 426-275 chr7 83262267 83262616 + 2 NA Intergenic Intergenic -99557 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 571-70 chr19 57127315 57127671 + 2 NA intron (NM_020903, intron 3 of 3) L1PA10|LINE|L1 7352 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 703-106 chr9 104442271 104442803 + 2 NA Intergenic Intergenic -61726 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 414-299 chr7 25692356 25692717 + 2 NA intron (NR_157808, intron 1 of 4) L1MB2|LINE|L1 -21805 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 340-391 chr4 33333224 33333461 + 2 NA Intergenic L1PA15-16|LINE|L1 706551 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 452-66 chr13 49350757 49351072 + 2 NA intron (NM_001079670, intron 6 of 10) intron (NM_001079670, intron 6 of 10) 50628 NM_030925 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 230-269 chr4 90882113 90882336 + 2 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 647193 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 356-153 chr14 77205168 77205356 + 2 NA intron (NM_020431, intron 1 of 23) intron (NM_020431, intron 1 of 23) 23464 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 264-243 chr20 49505500 49505712 + 2 NA 3' UTR (NM_000961, exon 10 of 10) 3' UTR (NM_000961, exon 10 of 10) -22938 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 321-46 chr10 14138995 14139214 + 2 NA intron (NR_134578, intron 2 of 3) MamRep38|DNA|hAT 64820 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 268-384 chr8 3875917 3876074 + 2 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1118919 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 318-249 chr2 26283631 26283935 + 2 NA intron (NM_001281512, intron 11 of 14) intron (NM_001281512, intron 11 of 14) 35266 NM_001145168 165082 Hs.631878 NM_153835 ENSG00000173567 ADGRF3 GPR113|PGR23 adhesion G protein-coupled receptor F3 protein-coding 386-313 chr6 150102781 150103055 + 2 NA Intergenic L1MA8|LINE|L1 -33797 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 248-426 chr9 29816283 29816497 + 2 NA Intergenic L1M2c|LINE|L1 592064 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 274-247 chr21 29659212 29659452 + 2 NA intron (NM_000830, intron 4 of 16) intron (NM_000830, intron 4 of 16) 63292 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 236-93 chr12 90896971 90897148 + 2 NA Intergenic Intergenic -20964 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 272-409 chr7 5474471 5474621 + 2 NA intron (NM_001363441, intron 4 of 4) AluJb|SINE|Alu 21371 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 227-185 chr2 143876953 143877076 + 2 NA Intergenic Intergenic -60053 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 325-481 chr6 153857436 153857667 + 2 NA Intergenic Intergenic -152945 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 469-106 chr17 44300614 44300960 + 2 NA non-coding (NR_110802, exon 4 of 4) non-coding (NR_110802, exon 4 of 4) 7644 NR_110802 101926996 Hs.666688 NR_110802 RUNDC3A-AS1 - RUNDC3A antisense RNA 1 ncRNA 309-178 chr15 69984358 69984644 + 2 NA Intergenic HAL1|LINE|L1 94967 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 326-84 chr10 111916853 111917025 + 2 NA Intergenic Intergenic 266826 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 249-277 chr3 167190186 167190345 + 2 NA Intergenic Intergenic 190018 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 804-2 chr1 37018571 37019167 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 15646 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 416-202 chr20 38204875 38205227 + 2 NA Intergenic L1MA9|LINE|L1 -38543 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 338-424 chr5 37532313 37532547 + 2 NA intron (NM_001345998, intron 9 of 17) L1PB1|LINE|L1 153112 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 343-187 chr16 68608040 68608280 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -37150 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 247-437 chr9 130909627 130909804 + 2 NA intron (NM_001145106, intron 6 of 7) intron (NM_001145106, intron 6 of 7) -12903 NM_198180 347148 Hs.660704 NM_198180 ENSG00000188710 QRFP 26RFa|P518 pyroglutamylated RFamide peptide protein-coding 293-101 chr13 47375464 47375716 + 2 NA Intergenic AluJb|SINE|Alu -478514 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 305-466 chr6 45999462 45999705 + 2 NA intron (NM_001370649, intron 1 of 5) Tigger2a|DNA|TcMar-Tigger 16277 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 756-52 chr7 97044535 97045205 + 2 NA Intergenic Intergenic -20039 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 280-338 chr5 144903053 144903239 + 2 NA Intergenic Intergenic 697755 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 400-181 chr2 174503978 174504362 + 2 NA Intergenic AluSz|SINE|Alu -17082 NM_001267051 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 277-403 chr8 50222102 50222262 + 2 NA intron (NR_135797, intron 2 of 20) LTR8A|LTR|ERV1 58051 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 246-174 chr18 69716432 69716624 + 2 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 231345 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 316-19 chr1 111069341 111069530 + 2 NA Intergenic L1PA15|LINE|L1 -69948 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 526-100 chr17 68483905 68484369 + 2 NA intron (NM_001278433, intron 1 of 10) L1M4|LINE|L1 -26613 NM_001320772 55062 Hs.463964 NM_017983 ENSG00000070540 WIPI1 ATG18|ATG18A|WIPI49 WD repeat domain, phosphoinositide interacting 1 protein-coding 381-152 chr18 52479083 52479308 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 138998 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 462-250 chr6 47366237 47366602 + 2 NA Intergenic L1MA8|LINE|L1 -56514 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 287-281 chr4 48771115 48771280 + 2 NA intron (NM_015030, intron 1 of 63) intron (NM_015030, intron 1 of 63) 9102 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 371-24 chr1 196103161 196103456 + 2 NA Intergenic L1MA1|LINE|L1 -14593 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 336-69 chr10 64627700 64628026 + 2 NA Intergenic L2c|LINE|L2 -197665 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 378-111 chr12 128670324 128670588 + 2 NA intron (NM_001136103, intron 5 of 8) L1MA8|LINE|L1 153502 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 254-365 chr7 7337864 7338111 + 2 NA Intergenic L1PA16|LINE|L1 82833 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 621-32 chr14 61656645 61657169 + 2 NA Intergenic AluSx1|SINE|Alu -38606 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 477-252 chr7 9434825 9435226 + 2 NA Intergenic Intergenic -199245 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 429-24 chr1 199272042 199272383 + 2 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 123614 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 534-182 chr4 113439355 113439703 + 2 NA Intergenic (ATC)n|Simple_repeat|Simple_repeat 146690 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 554-94 chr17 53418126 53418522 + 2 NA Intergenic Intergenic -404603 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 320-176 chr15 88092505 88092746 + 2 NA intron (NM_001007156, intron 13 of 15) MLT1D|LTR|ERVL-MaLR 113349 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 306-337 chr3 186875724 186876025 + 2 NA Intergenic AluJo|SINE|Alu -14506 NR_046662 100874095 Hs.638968 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 407-315 chr8 24214397 24214793 + 2 NA Intergenic L1MEd|LINE|L1 -79445 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 306-419 chr6 363490 363705 + 2 NA Intergenic Intergenic -28155 NM_002460 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 281-430 chr8 43870194 43870404 + 2 NA Intergenic ALR/Alpha|Satellite|centr 577857 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 345-566 chrX 76852907 76853245 + 2 NA intron (NR_110403, intron 1 of 3) intron (NR_110403, intron 1 of 3) 66284 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 316-460 chr5 134330909 134331087 + 2 NA intron (NM_001349366, intron 1 of 8) HSMAR2|DNA|TcMar-Mariner 36076 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 322-406 chr5 8269396 8269633 + 2 NA Intergenic Intergenic 188050 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 368-453 chr8 83504487 83504740 + 2 NA Intergenic L1PBa|LINE|L1 100855 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 212-216 chr3 103013802 103013936 + 2 NA Intergenic Intergenic 510247 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 361-238 chr2 161782665 161783016 + 2 NA intron (NM_001354453, intron 2 of 24) L1M3d|LINE|L1 158424 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 840-18 chr16 74006257 74007006 + 2 NA Intergenic L1M2|LINE|L1 208890 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 377-12 chr1 99023469 99023798 + 2 NA intron (NR_033940, intron 1 of 2) L1MC5|LINE|L1 -18772 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 355-270 chr2 225602651 225602925 + 2 NA intron (NM_001371273, intron 5 of 7) L1MB3|LINE|L1 201902 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 321-412 chr4 45774939 45775164 + 2 NA Intergenic Intergenic 349003 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 383-154 chr17 38965999 38966317 + 2 NA intron (NM_001008777, intron 1 of 10) L1ME4c|LINE|L1 1245 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 1056-15 chr5 135617623 135618404 + 2 NA intron (NM_001349335, intron 1 of 10) L1MA4A|LINE|L1 35922 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 402-319 chr7 54498451 54498794 + 2 NA Intergenic L1M5|LINE|L1 -43703 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 329-436 chr5 4063765 4064008 + 2 NA Intergenic Intergenic 468054 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 178-68 chr2 114068532 114068670 + 2 NA Intergenic Intergenic -88617 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 294-475 chr8 120679824 120680051 + 2 NA intron (NM_021021, intron 2 of 6) L2c|LINE|L2 -81316 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 339-211 chr17 52948069 52948307 + 2 NA Intergenic Intergenic -37317 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 331-538 chr8 111833172 111833460 + 2 NA Intergenic Intergenic 456677 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 231-72 chr12 67333313 67333476 + 2 NA Intergenic L1MA4A|LINE|L1 64036 NM_001329676 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 313-532 chr8 100825393 100825597 + 2 NA Intergenic Intergenic -103407 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 178-54 chr17 67676945 67677078 + 2 NA intron (NM_012417, intron 8 of 8) intron (NM_012417, intron 8 of 8) -40822 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 468-11 chr1 164764481 164764771 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 10015 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 294-365 chr5 24879334 24879519 + 2 NA Intergenic Intergenic -38843 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 407-321 chr8 84572408 84572801 + 2 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -133323 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 503-165 chr2 222334808 222335149 + 2 NA intron (NR_136642, intron 1 of 3) L1M2|LINE|L1 14317 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 467-145 chr2 218826206 218826654 + 2 NA intron (NM_017431, intron 10 of 13) intron (NM_017431, intron 10 of 13) 3340 NR_128707 103504730 NR_128707 ENSG00000283639 MIR9500 hsa-mir-9500 microRNA 9500 ncRNA 295-44 chr10 36205708 36205894 + 2 NA Intergenic L2c|LINE|L2 427499 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 348-477 chr6 165772060 165772244 + 2 NA Intergenic Intergenic -109872 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 523-52 chr11 58410703 58411221 + 2 NA Intergenic L1MA6|LINE|L1 -7553 NM_001005469 441608 Hs.553826 NM_001005469 ENSG00000172769 OR5B3 OR11-239|OR5B13|OST129 olfactory receptor family 5 subfamily B member 3 protein-coding 516-73 chr14 84234417 84234768 + 2 NA Intergenic Intergenic -1037340 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 1071-17 chr5 133723285 133724285 + 2 NA Intergenic L1M2a|LINE|L1 -111244 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 477-167 chr2 155317567 155317935 + 2 NA Intergenic Intergenic 619056 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 690-22 chr11 115210200 115210604 + 2 NA intron (NM_001301044, intron 7 of 10) intron (NM_001301044, intron 7 of 10) -123175 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 265-370 chr7 106359777 106359961 + 2 NA Intergenic L1PA7|LINE|L1 -74886 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 407-22 chr1 238557268 238557554 + 2 NA Intergenic Intergenic -71394 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 512-32 chr10 43237927 43238310 + 2 NA intron (NM_145313, intron 1 of 12) intron (NM_145313, intron 1 of 12) -8379 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 252-134 chr15 97612310 97612475 + 2 NA Intergenic L1M1|LINE|L1 -51694 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 286-36 chr10 30405167 30405451 + 2 NA Intergenic L1MB8|LINE|L1 -28712 NM_001244134 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 266-425 chr8 107250353 107250510 + 2 NA 3' UTR (NM_001146, exon 9 of 9) 3' UTR (NM_001146, exon 9 of 9) 86084 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 283-183 chr17 61568681 61568895 + 2 NA Intergenic Intergenic 22431 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 302-92 chr11 125203705 125203962 + 2 NA intron (NM_022062, intron 1 of 12) intron (NM_022062, intron 1 of 12) 39082 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 188-26 chr11 58201845 58202021 + 2 NA Intergenic Intergenic 2248 NM_001004459 219958 Hs.553644 NM_001004459 ENSG00000197887 OR1S2 OR11-231 olfactory receptor family 1 subfamily S member 2 protein-coding 330-143 chr13 101303911 101304229 + 2 NA intron (NM_001350749, intron 7 of 43) intron (NM_001350749, intron 7 of 43) 112438 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 263-224 chr2 225804818 225805005 + 2 NA Intergenic L2a|LINE|L2 -337883 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 664-73 chr3 80616432 80617014 + 2 NA Intergenic Intergenic -148174 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 402-175 chr2 171309526 171309765 + 2 NA Intergenic L3b|LINE|CR1 -78352 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 729-85 chrX 125713195 125713719 + 2 NA Intergenic L1PA13|LINE|L1 393586 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 374-148 chr17 72636452 72636786 + 2 NA intron (NR_033876, intron 2 of 4) intron (NR_033876, intron 2 of 4) 3853 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 567-148 chr5 105835246 105835758 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 736028 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 248-268 chr4 26548980 26549148 + 2 NA Intergenic Intergenic -34860 NM_001292054 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 254-291 chr4 185690625 185690856 + 2 NA intron (NM_001145672, intron 1 of 20) intron (NM_001145672, intron 1 of 20) -33771 NM_001145674 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 312-343 chr3 112281025 112281248 + 2 NA intron (NM_001320531, intron 2 of 27).2 intron (NM_001320531, intron 2 of 27).2 13080 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 280-427 chr8 131779393 131779613 + 2 NA Intergenic L1MB2|LINE|L1 -124590 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 167-17 chr10 22834330 22834458 + 2 NA Intergenic Intergenic -93630 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 477-151 chr2 56864816 56865219 + 2 NA Intergenic L1MEc|LINE|L1 -679247 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 209-133 chr18 9684842 9684992 + 2 NA Intergenic Intergenic -23384 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 345-137 chr13 61380342 61380632 + 2 NA Intergenic L1MB8|LINE|L1 35035 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 303-194 chr2 8357510 8357722 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -29197 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 396-388 chrX 116399398 116399718 + 2 NA Intergenic L1MEg|LINE|L1 -37048 NM_007231 11254 Hs.522109 NM_007231 ENSG00000268104 SLC6A14 BMIQ11 solute carrier family 6 member 14 protein-coding 293-329 chr5 13697556 13697739 + 2 NA intron (NM_001369, intron 78 of 78) intron (NM_001369, intron 78 of 78) 246833 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 302-261 chr21 29501923 29502186 + 2 NA Intergenic Intergenic 6007 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 282-83 chr12 5344192 5344450 + 2 NA Intergenic Intergenic -87787 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 622-112 chr5 161932521 161933014 + 2 NA intron (NR_126372, intron 1 of 2) MER119|DNA|hAT-Charlie 68429 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 317-260 chr2 187695404 187695645 + 2 NA Intergenic Intergenic -141019 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 302-206 chr2 42466086 42466238 + 2 NA intron (NM_172344, intron 1 of 1) AluSx|SINE|Alu 27820 NM_133329 170850 Hs.352633 NM_133329 ENSG00000171126 KCNG3 KV10.1|KV6.3 potassium voltage-gated channel modifier subfamily G member 3 protein-coding 271-146 chr15 57065723 57065956 + 2 NA intron (NM_207038, intron 4 of 19) intron (NM_207038, intron 4 of 19) 146394 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 322-117 chr12 17091968 17092282 + 2 NA Intergenic L2|LINE|L2 103378 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 361-256 chr20 54702722 54703061 + 2 NA Intergenic L1ME2z|LINE|L1 227298 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 669-6 chr1 166347464 166348010 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 142302 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 366-311 chr4 59656936 59657152 + 2 NA Intergenic L1PA8A|LINE|L1 643471 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 350-363 chr4 113818378 113818618 + 2 NA Intergenic AluJb|SINE|Alu -56571 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 214-174 chr2 176514383 176514562 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 86580 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 184-34 chr11 34695628 34695763 + 2 NA Intergenic L1M2|LINE|L1 63129 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 231-126 chr17 54548263 54548434 + 2 NA Intergenic L1MA5|LINE|L1 -352343 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 282-54 chr10 87983802 87983996 + 2 NA Intergenic L2|LINE|L2 120274 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 230-404 chrX 100376534 100376679 + 2 NA intron (NM_020766, intron 2 of 4) intron (NM_020766, intron 2 of 4) 33667 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 226-386 chr9 106047830 106047978 + 2 NA Intergenic L1M6|LINE|L1 353363 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 217-398 chrX 83494952 83495097 + 2 NA Intergenic Intergenic -13266 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 294-126 chr14 77169689 77169882 + 2 NA Intergenic L1MB7|LINE|L1 -12013 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 504-269 chr8 134254515 134254839 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -343394 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 560-156 chr6 135549849 135550249 + 2 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 52248 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 331-459 chr6 62088584 62088772 + 2 NA intron (NR_146874, intron 2 of 13) L1P3|LINE|L1 197547 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 204-303 chr9 11268715 11268874 + 2 NA Intergenic LTR25-int|LTR|ERV1 655588 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 232-62 chr11 108554899 108555106 + 2 NA intron (NM_015065, intron 1 of 5) intron (NM_015065, intron 1 of 5) -2773 NM_001144763 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 296-498 chr9 102485262 102485447 + 2 NA Intergenic L1PA5|LINE|L1 -34283 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 469-212 chr5 27272864 27273328 + 2 NA Intergenic L1MEf|LINE|L1 -199196 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 197-187 chr6 134781934 134782098 + 2 NA Intergenic Intergenic 168085 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 629-8 chr1 114537326 114537921 + 2 NA Intergenic AluY|SINE|Alu -26420 NM_033020 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 177-9 chr1 147682603 147682755 + 2 NA Intergenic L1MA8|LINE|L1 -12155 NR_136636 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 542-168 chr5 82141635 82142000 + 2 NA intron (NM_031482, intron 3 of 7) (ACACACAT)n|Simple_repeat|Simple_repeat 136537 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 265-275 chr4 77777493 77777720 + 2 NA intron (NM_001365006, intron 1 of 11) intron (NM_001365006, intron 1 of 11) 41458 NM_001365007 246175 Hs.592519 NM_144571 ENSG00000138767 CNOT6L CCR4b CCR4-NOT transcription complex subunit 6 like protein-coding 328-266 chr2 84565177 84565341 + 2 NA intron (NM_001370, intron 11 of 76) L1P4|LINE|L1 48804 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 552-72 chr15 48832967 48833454 + 2 NA intron (NM_203349, intron 11 of 11) L1MB1|LINE|L1 -22141 NM_014985 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 371-216 chr20 39212756 39213101 + 2 NA TTS (NR_027124) TTS (NR_027124) 11820 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 171-51 chr2 26732919 26733030 + 2 NA 3' UTR (NM_002246, exon 2 of 2) 3' UTR (NM_002246, exon 2 of 2) -31310 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 205-111 chr16 60777998 60778127 + 2 NA Intergenic L1MD1|LINE|L1 277704 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 297-136 chr14 57259631 57259894 + 2 NA intron (NM_006544, intron 1 of 17) intron (NM_006544, intron 1 of 17) 9143 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 304-358 chr3 149053430 149053621 + 2 NA intron (NM_001318935, intron 14 of 25) MSTB|LTR|ERVL-MaLR -32807 NR_046648 100873945 Hs.742423 NR_046648 ENSG00000239718 HLTF-AS1 - HLTF antisense RNA 1 ncRNA 239-155 chr19 29305107 29305279 + 2 NA intron (NR_040029, intron 9 of 9) L1MEd|LINE|L1 -92042 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 630-121 chr6 129491158 129491570 + 2 NA intron (NM_000426, intron 56 of 64) intron (NM_000426, intron 56 of 64) 218813 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 768-25 chr17 58910315 58910745 + 2 NA intron (NM_014906, intron 1 of 6) L1MCa|LINE|L1 154661 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 365-134 chr15 98263978 98264294 + 2 NA Intergenic L1MCc|LINE|L1 67422 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 453-183 chr4 70202790 70203183 + 2 NA intron (NM_017855, intron 9 of 10) intron (NM_017855, intron 9 of 10) 6459 NM_017855 54959 Hs.143811 NM_017855 ENSG00000109205 ODAM APIN odontogenic, ameloblast associated protein-coding 259-195 chr2 70802073 70802280 + 2 NA Intergenic Intergenic -11533 NM_001004311 344018 Hs.407636 NM_001004311 ENSG00000183733 FIGLA BHLHC8|FIGALPHA|POF6 folliculogenesis specific bHLH transcription factor protein-coding 349-78 chr10 96463728 96464022 + 2 NA intron (NM_012465, intron 2 of 20) intron (NM_012465, intron 2 of 20) 50051 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 381-100 chr14 30125503 30125817 + 2 NA Intergenic Intergenic -197813 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 485-81 chr14 80357186 80357597 + 2 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -126334 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 337-453 chr5 74147641 74147819 + 2 NA Intergenic Intergenic 160595 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 242-235 chr3 51077505 51077697 + 2 NA intron (NM_004947, intron 7 of 52) L2|LINE|L2 -307690 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 531-144 chr21 34352647 34352996 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -11203 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 360-487 chr9 75525858 75526157 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -364637 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 192-201 chr8 47770755 47770895 + 2 NA Intergenic AluJo|SINE|Alu -32661 NM_005195 1052 Hs.440829 NM_005195 ENSG00000221869 CEBPD C/EBP-delta|CELF|CRP3|NF-IL6-beta CCAAT enhancer binding protein delta protein-coding 317-109 chr12 41585898 41586097 + 2 NA Intergenic Intergenic 148258 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 320-290 chr2 193488515 193488698 + 2 NA Intergenic Intergenic 738761 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 278-179 chr18 60094393 60094573 + 2 NA Intergenic Intergenic 194487 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 291-315 chr4 44041768 44041960 + 2 NA Intergenic L1MA2|LINE|L1 24802 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 325-424 chr5 8156691 8156869 + 2 NA Intergenic Intergenic 287632 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 392-75 chr12 129706440 129706695 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 197458 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 208-123 chr2 105138314 105138461 + 2 NA Intergenic MLT2B1|LTR|ERVL -5726 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 507-196 chr5 24836127 24836441 + 2 NA non-coding (NR_037896, exon 3 of 3) non-coding (NR_037896, exon 3 of 3) 4299 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 332-214 chr18 47190850 47191165 + 2 NA Intergenic Intergenic -14643 NM_016097 51124 Hs.130917 NM_016097 ENSG00000134049 IER3IP1 HSPC039|MEDS|PRO2309 immediate early response 3 interacting protein 1 protein-coding 587-31 chr11 89167217 89167635 + 2 NA Intergenic Intergenic -10449 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 294-136 chr15 54721140 54721380 + 2 NA Intergenic L1MEg|LINE|L1 -335487 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 173-75 chr2 179690069 179690200 + 2 NA intron (NR_148056, intron 3 of 9) LTR33|LTR|ERVL -29940 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 300-450 chr8 46782445 46782602 + 2 NA Intergenic L1M4|LINE|L1 -58363 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 140-51 chr4 37127198 37127320 + 2 NA Intergenic L1MEc|LINE|L1 114732 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 474-253 chr6 56798164 56798505 + 2 NA intron (NM_001144770, intron 2 of 94) Tigger1|DNA|TcMar-Tigger 45331 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 557-94 chr2 53260615 53260991 + 2 NA Intergenic Intergenic -506980 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 428-151 chr20 15091795 15092150 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -104868 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 347-234 chr2 102081558 102081797 + 2 NA intron (NM_001320978, intron 1 of 11) intron (NM_001320978, intron 1 of 11) 11287 NM_001288706 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 324-232 chr18 75512359 75512639 + 2 NA Intergenic L1PBa|LINE|L1 -84796 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 363-242 chr2 209337072 209337390 + 2 NA Intergenic (ATGTT)n|Simple_repeat|Simple_repeat -86816 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 173-137 chr8 54675496 54675612 + 2 NA Intergenic L1M5|LINE|L1 59458 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 173-78 chr2 210755170 210755260 + 2 NA Intergenic Helitron3Na_Mam|RC|Helitron 137644 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 680-16 chr10 39243543 39244045 + 2 NA Intergenic ALR/Alpha|Satellite|centr 547198 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 483 chr1 24062215 24062543 + 2 NA intron (NM_152372, intron 32 of 36) L2c|LINE|L2 49756 NM_152372 127294 Hs.523413 NM_152372 ENSG00000142661 MYOM3 - myomesin 3 protein-coding 525-148 chr21 30137434 30137836 + 2 NA Intergenic Intergenic 29170 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 574-196 chrX 5347293 5347734 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -713941 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 243-185 chr19 30395733 30395923 + 2 NA intron (NM_014717, intron 1 of 4) L1MC1|LINE|L1 23444 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 326-226 chr2 12274519 12274725 + 2 NA intron (NR_110196, intron 3 of 5) L1MEg|LINE|L1 75492 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 215-211 chr3 185456408 185456568 + 2 NA intron (NM_004721, intron 7 of 13) intron (NM_004721, intron 7 of 13) 42547 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 430-212 chr4 59281243 59281570 + 2 NA Intergenic MLT2B4|LTR|ERVL 267833 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 578-96 chr2 189976838 189977385 + 2 NA Intergenic L1PA5|LINE|L1 85618 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 311-344 chr3 74590444 74590706 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -69435 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 367-453 chr8 85891419 85891688 + 2 NA Intergenic Intergenic -63611 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 330-122 chr12 39841310 39841555 + 2 NA intron (NM_052885, intron 6 of 9) intron (NM_052885, intron 6 of 9) 215249 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 279-350 chr5 165116437 165116589 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 646234 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 262-418 chr8 34940636 34940808 + 2 NA Intergenic Intergenic 156801 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 443-105 chr15 60716561 60716906 + 2 NA intron (NM_134261, intron 1 of 10) MER21A|LTR|ERVL 35164 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 252-188 chr2 56121257 56121496 + 2 NA Intergenic Intergenic -30994 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 232-255 chr3 175275426 175275597 + 2 NA intron (NM_207015, intron 4 of 13) MER91B|DNA|hAT-Tip100 -4415 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 414-321 chr8 55257011 55257344 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 155149 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 315-509 chr9 28389136 28389358 + 2 NA intron (NM_152570, intron 3 of 6) (TATTTTA)n|Simple_repeat|Simple_repeat 330058 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 160 chr1 17129140 17129263 + 2 NA Intergenic LTR24B|LTR|ERV1 -9750 NM_007365 11240 Hs.33455 NM_007365 ENSG00000117115 PADI2 PAD-H19|PAD2|PDI2 peptidyl arginine deiminase 2 protein-coding 308-411 chr6 14745730 14745990 + 2 NA Intergenic Intergenic -460406 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 408-352 chr9 9100644 9100887 + 2 NA intron (NM_002839, intron 10 of 45) intron (NM_002839, intron 10 of 45) 242747 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 195-80 chr16 82955021 82955173 + 2 NA intron (NR_110937, intron 1 of 2) L1MB7|LINE|L1 35201 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 383-67 chr11 111394594 111394853 + 2 NA Intergenic Intergenic -15448 NM_006235 5450 Hs.654525 NM_006235 ENSG00000110777 POU2AF1 BOB1|OBF-1|OBF1|OCAB POU class 2 homeobox associating factor 1 protein-coding 246-385 chr7 147745142 147745319 + 2 NA intron (NM_014141, intron 12 of 22) MIR3|SINE|MIR 73551 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 216-281 chr5 100118798 100118979 + 2 NA Intergenic L1MEg|LINE|L1 269366 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 511-160 chr21 35149434 35149787 + 2 NA Intergenic Intergenic -100312 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 378-118 chr13 61541727 61542099 + 2 NA Intergenic MER68B|LTR|ERVL -113967 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 386-220 chr22 24862933 24863209 + 2 NA intron (NM_001098498, intron 9 of 23) intron (NM_001098498, intron 9 of 23) 56850 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 396-222 chr3 96847876 96848145 + 2 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 33416 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 306-526 chr8 130658731 130658918 + 2 NA Intergenic L2b|LINE|L2 -215150 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 412-265 chr5 125026800 125027094 + 2 NA Intergenic Intergenic -9884 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 139-80 chr6 74345966 74346067 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 276565 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 209-232 chr4 109159083 109159191 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 143521 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 481-294 chr8 87411232 87411679 + 2 NA Intergenic Intergenic 462560 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 255-319 chr5 25523545 25523764 + 2 NA Intergenic Intergenic 332701 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 505-262 chr6 17201518 17201873 + 2 NA Intergenic LTR12D|LTR|ERV1 -79666 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 506-145 chr2 75786007 75786422 + 2 NA Intergenic Intergenic -75299 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 235-46 chr10 70908826 70908998 + 2 NA Intergenic L2a|LINE|L2 -20347 NM_001323004 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 566-190 chr8 43819447 43819969 + 2 NA Intergenic ALR/Alpha|Satellite|centr 527266 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 231-209 chr22 43513522 43513748 + 2 NA Intergenic AluSx4|SINE|Alu -2619 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 220-141 chr18 38816927 38817117 + 2 NA Intergenic L1ME1|LINE|L1 805153 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 215-290 chr7 11998406 11998589 + 2 NA Intergenic Intergenic -166299 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 189-78 chr18 64886670 64886814 + 2 NA Intergenic Intergenic -626687 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 565-170 chr7 55937341 55937791 + 2 NA intron (NM_182633, intron 6 of 6) LTR78|LTR|ERV1 -14311 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 397-53 chr11 83329044 83329270 + 2 NA Intergenic Intergenic -42750 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 492-205 chr5 44509753 44510115 + 2 NA intron (NR_131946, intron 1 of 2) intron (NR_131946, intron 1 of 2) 348 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 360-374 chr5 106896120 106896324 + 2 NA intron (NR_104671, intron 2 of 3) (TA)n|Simple_repeat|Simple_repeat 114792 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 324-559 chr9 23881584 23881864 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -31123 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 453-50 chr12 29052575 29052970 + 2 NA Intergenic L1M3d|LINE|L1 -96506 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 277-413 chr8 87766284 87766446 + 2 NA Intergenic L1MA7|LINE|L1 107650 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 351-61 chr11 20954307 20954516 + 2 NA intron (NM_201551, intron 11 of 18) intron (NM_201551, intron 11 of 18) 284825 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 310-23 chr1 183017994 183018297 + 2 NA Intergenic L1MA5|LINE|L1 -5275 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 347-342 chr4 45069222 45069431 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -342692 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 321-212 chr16 31615033 31615327 + 2 NA Intergenic L1PA16|LINE|L1 -45656 NR_027011 440359 Hs.650902 NR_027011 YBX3P1 CSDAP1 Y-box binding protein 3 pseudogene 1 pseudo 462-37 chr10 115920544 115920907 + 2 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 274064 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 513-197 chr4 118115 118601 + 2 NA Intergenic L1PA16|LINE|L1 -6118 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 396-53 chr10 64453290 64453654 + 2 NA Intergenic LTR69|LTR|ERVL -372056 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 360-498 chrX 21189596 21189906 + 2 NA Intergenic L1PB4|LINE|L1 -184667 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 329-382 chr3 131881800 131882083 + 2 NA intron (NM_130808, intron 2 of 15) intron (NM_130808, intron 2 of 15) 103990 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 403-45 chr11 15545095 15545413 + 2 NA Intergenic L1ME3G|LINE|L1 -98631 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 360-7 chr1 64714943 64715129 + 2 NA Intergenic Intergenic -29937 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 227-219 chr22 27688517 27688735 + 2 NA Intergenic MIR|SINE|MIR 113130 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 370-254 chr2 166733133 166733443 + 2 NA Intergenic Intergenic -155199 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 246-387 chr8 18631265 18631474 + 2 NA intron (NM_015310, intron 11 of 15) intron (NM_015310, intron 11 of 15) 177498 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 226-308 chr6 88268728 88268902 + 2 NA Intergenic Intergenic -101466 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 838 chr1 34484816 34485389 + 2 NA Intergenic Intergenic 184592 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 432-76 chr13 94857742 94858031 + 2 NA intron (NR_110754, intron 2 of 4) intron (NR_110754, intron 2 of 4) 96945 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 257-437 chr9 37670882 37671070 + 2 NA intron (NM_001371223, intron 1 of 15) intron (NM_001371223, intron 1 of 15) 2967 NM_001371223 232-404 chr9 100860732 100860895 + 2 NA Intergenic L1PA16|LINE|L1 -167914 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 532-86 chr16 35440894 35441398 + 2 NA Intergenic Intergenic 39450 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 264-357 chr6 61944730 61944925 + 2 NA intron (NR_146874, intron 4 of 13) AluSx|SINE|Alu 341398 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 305-346 chr3 82386831 82387047 + 2 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 400797 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 317-497 chr8 112754564 112754870 + 2 NA intron (NM_001363185, intron 11 of 66) LTR33B|LTR|ERVL 111224 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 422-313 chr9 86373205 86373447 + 2 NA Intergenic AluSx|SINE|Alu -18916 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 332-378 chr4 59550263 59550450 + 2 NA Intergenic L2|LINE|L2 536783 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 389-376 chr8 136369036 136369301 + 2 NA Intergenic Intergenic -161630 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 450-7 chr1 91321286 91321632 + 2 NA intron (NM_001017975, intron 23 of 38) AluSz|SINE|Alu 83378 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 502-206 chr4 151789115 151789522 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -28295 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 271-387 chr6 119032971 119033215 + 2 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) 36050 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 329-439 chr5 6112367 6112633 + 2 NA Intergenic Intergenic 224792 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 224-327 chr8 88960441 88960580 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -633027 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 390-91 chr14 52155039 52155298 + 2 NA Intergenic Intergenic -86109 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 302-54 chr10 84009175 84009333 + 2 NA Intergenic Charlie30a|DNA|hAT-Charlie -130255 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 337-199 chr17 33858795 33859016 + 2 NA intron (NM_001094, intron 1 of 9) MIR3|SINE|MIR 297901 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 232-3 chr1 22358287 22358438 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 92123 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 128-81 chr8 118787954 118788033 + 2 NA Intergenic Intergenic 163892 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 528-255 chr8 128219522 128219928 + 2 NA Intergenic Intergenic 69609 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 424-197 chr4 95967028 95967279 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 127060 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 136-94 chrX 28437910 28438006 + 2 NA Intergenic Intergenic 57705 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 223-184 chr20 21484798 21484972 + 2 NA Intergenic L1MB5|LINE|L1 29179 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 178-47 chr14 86328644 86328775 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 394031 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 679-36 chr16 5687486 5687954 + 2 NA Intergenic MER81|DNA|hAT-Blackjack 55253 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 312-204 chr18 60786578 60786808 + 2 NA Intergenic Intergenic -413918 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 215-18 chr1 198794645 198794799 + 2 NA Intergenic Intergenic 64260 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 368-459 chr8 109047574 109047815 + 2 NA Intergenic L1ME1|LINE|L1 -38934 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 259-275 chr4 12168057 12168296 + 2 NA Intergenic Intergenic -55275 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 658-63 chr2 47246094 47246539 + 2 NA intron (NR_110207, intron 1 of 2) L2c|LINE|L2 -69380 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 439-185 chr3 87869993 87870364 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) 77472 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 260-246 chr20 58115221 58115379 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -35602 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 172-142 chr8 137926139 137926272 + 2 NA intron (NR_161374, intron 2 of 7) LTR41B|LTR|ERVL 157340 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 606-79 chr2 28064169 28064703 + 2 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 68069 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 300-243 chr20 43546375 43546607 + 2 NA Intergenic MIR|SINE|MIR -12536 NM_170693 10110 Hs.300863 NM_016276 ENSG00000101049 SGK2 H-SGK2|dJ138B7.2 serum/glucocorticoid regulated kinase 2 protein-coding 494-65 chr14 63145600 63145974 + 2 NA Intergenic L1MA5|LINE|L1 -58656 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 798-44 chr4 71511869 71512615 + 2 NA intron (NM_003759, intron 13 of 22) L1MA4A|LINE|L1 173189 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 308-267 chr20 33237702 33237867 + 2 NA exon (NM_130852, exon 2 of 9) exon (NM_130852, exon 2 of 9) 1788 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 319-284 chr20 7155539 7155769 + 2 NA intron (NR_110609, intron 5 of 7) intron (NR_110609, intron 5 of 7) 98548 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 445-264 chr8 31377710 31378072 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -261861 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 353-473 chr7 798488 798741 + 2 NA Intergenic AluSz|SINE|Alu -16943 NM_001171946 23353 Hs.438072 NM_025154 ENSG00000164828 SUN1 UNC84A Sad1 and UNC84 domain containing 1 protein-coding 278-34 chr10 59518810 59519070 + 2 NA Intergenic Intergenic -155759 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 393-353 chr8 82095981 82096305 + 2 NA Intergenic Intergenic -253857 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 323-413 chr5 56472267 56472514 + 2 NA intron (NR_104664, intron 1 of 4) AluSz|SINE|Alu 9379 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 310-492 chr7 99262068 99262334 + 2 NA Intergenic Intergenic -11100 NR_002147 84176 Hs.621401 NR_002147 MYH16 MHC20|MYH16P|MYH5 myosin heavy chain 16 pseudogene pseudo 184-151 chr7 4488309 4488440 + 2 NA Intergenic L1PA7|LINE|L1 -193921 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 547-190 chr5 123639155 123639493 + 2 NA Intergenic MIRb|SINE|MIR 93907 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 317-471 chr7 155605106 155605328 + 2 NA Intergenic L1MC4|LINE|L1 -34471 NM_001369813 285888 Hs.146751 NM_001103176 ENSG00000146910 CNPY1 - canopy FGF signaling regulator 1 protein-coding 408-316 chr7 54896589 54896853 + 2 NA Intergenic HAL1|LINE|L1 -122296 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 388-273 chr5 37958938 37959144 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 10550 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 325-319 chr21 18073877 18074135 + 2 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) 156666 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 338-525 chr8 20278982 20279259 + 2 NA intron (NR_047509, intron 1 of 2) L2c|LINE|L2 3347 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 512-116 chr2 40381772 40382109 + 2 NA intron (NM_001351483, intron 2 of 8) LOR1a|LTR|ERV1 48364 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 272-106 chr13 86034443 86034689 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -235147 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 506-187 chr3 133670974 133671404 + 2 NA intron (NM_001354703, intron 1 of 22) MLT1D|LTR|ERVL-MaLR 9191 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 430-118 chr17 77975110 77975533 + 2 NA Intergenic L1MA10|LINE|L1 -28916 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 289-312 chr3 103958091 103958306 + 2 NA Intergenic L1ME4b|LINE|L1 -434082 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 363-257 chr20 42422374 42422556 + 2 NA intron (NM_133170, intron 9 of 31) L1PA13|LINE|L1 -263018 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 551-71 chr18 14080997 14081415 + 2 NA intron (NR_033354, intron 3 of 5) L1MC1|LINE|L1 51229 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 272-362 chr5 133455383 133455635 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -27803 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 278-433 chr8 126925737 126925983 + 2 NA Intergenic Intergenic -87294 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 295-66 chr11 29972809 29973049 + 2 NA Intergenic Intergenic 9464 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 358-369 chr5 67965655 67965924 + 2 NA Intergenic Intergenic 172576 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 217-32 chr10 24249194 24249336 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -26420 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 211-42 chr10 106229547 106229727 + 2 NA Intergenic Intergenic 89472 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 333-552 chr7 144505499 144505805 + 2 NA intron (NM_001042482, intron 7 of 7) LTR1F|LTR|ERV1 -95425 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 265-203 chr2 199062543 199062715 + 2 NA Intergenic L1MA1|LINE|L1 395310 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 923-20 chr5 126239358 126240213 + 2 NA Intergenic Intergenic 45390 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 274-188 chr19 57670413 57670628 + 2 NA 5' UTR (NM_152677, exon 2 of 5) 5' UTR (NM_152677, exon 2 of 5) 1585 NM_152677 201516 Hs.469663 NM_152677 ENSG00000180532 ZSCAN4 ZNF494 zinc finger and SCAN domain containing 4 protein-coding 444-51 chr12 40491000 40491431 + 2 NA exon (NM_173600, exon 57 of 174) exon (NM_173600, exon 57 of 174) 97821 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 243-431 chr7 124306801 124306980 + 2 NA Intergenic Intergenic 45206 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 497-133 chr2 122315870 122316225 + 2 NA Intergenic LTR89|LTR|ERVL? 560396 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 273-35 chr1 224762275 224762458 + 2 NA Intergenic HAL1|LINE|L1 146049 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 553-81 chr16 87148688 87149037 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -63253 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 278-394 chr7 49588110 49588306 + 2 NA Intergenic Intergenic -185430 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 389-20 chr1 238527924 238528184 + 2 NA Intergenic L1MC4a|LINE|L1 -42037 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 477-268 chr8 3753940 3754275 + 2 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) -1025656 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 252-223 chr2 199072768 199072928 + 2 NA Intergenic L1MD|LINE|L1 385091 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 286-389 chr6 53719188 53719435 + 2 NA Intergenic Intergenic -53555 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 219-155 chr19 51919296 51919474 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger -8087 NM_024840 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 397-215 chr4 283318 283621 + 2 NA intron (NM_001137608, intron 3 of 3) L1MB2|LINE|L1 22005 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 403-262 chr5 156947234 156947469 + 2 NA intron (NM_001146726, intron 4 of 7) L1ME3G|LINE|L1 15875 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 377-409 chr8 117261164 117261515 + 2 NA Intergenic Intergenic 126344 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 272-3 chr1 11348538 11348702 + 2 NA Intergenic AluJb|SINE|Alu 75422 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 285-21 chr1 195354209 195354482 + 2 NA Intergenic Intergenic 734370 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 372-417 chr5 156126612 156126825 + 2 NA Intergenic Intergenic -200039 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 845-40 chr8 138548948 138549544 + 2 NA Intergenic Intergenic -51516 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 635-26 chr14 42650008 42650537 + 2 NA Intergenic Intergenic 1043416 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 260-430 chr8 69580185 69580417 + 2 NA intron (NR_156414, intron 5 of 20) intron (NR_156414, intron 5 of 20) -12599 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 253-119 chr13 87416404 87416566 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger 202255 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 345-39 chr1 220483877 220484162 + 2 NA Intergenic Intergenic -44117 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 238-107 chr14 83423237 83423420 + 2 NA Intergenic L1M5|LINE|L1 780696 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 468-133 chr2 9532099 9532453 + 2 NA intron (NM_003183, intron 4 of 18) U13|snRNA|snRNA 23554 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 502-258 chr8 52307476 52307875 + 2 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -53183 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 345-491 chr7 36706825 36707119 + 2 NA intron (NM_001637, intron 1 of 20) Tigger1|DNA|TcMar-Tigger 17522 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 325-242 chr18 62387199 62387415 + 2 NA 3' UTR (NM_001278268, exon 10 of 10) 3' UTR (NM_001278268, exon 10 of 10) 61997 NM_001278268 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 304-565 chrX 43384884 43385144 + 2 NA Intergenic L2b|LINE|L2 208020 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 355-457 chr7 33530268 33530610 + 2 NA intron (NM_198428, intron 20 of 22) intron (NM_198428, intron 20 of 22) -374476 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 259-319 chr5 88549571 88549757 + 2 NA intron (NR_152235, intron 2 of 3) intron (NR_152235, intron 2 of 3) -110574 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 147-49 chr2 179002321 179002434 + 2 NA intron (NM_001316745, intron 2 of 11) intron (NM_001316745, intron 2 of 11) 47760 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 337-486 chr6 62711215 62711408 + 2 NA Intergenic L1M5|LINE|L1 -425084 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 133-60 chr5 3049831 3049909 + 2 NA Intergenic Intergenic -127965 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 388-354 chr8 131572998 131573222 + 2 NA Intergenic AluSx1|SINE|Alu -330983 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 226-242 chr3 192003580 192003743 + 2 NA Intergenic Intergenic -234969 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 382-54 chr10 129996950 129997305 + 2 NA Intergenic L1MA3|LINE|L1 -32853 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 294-327 chr4 37996982 37997249 + 2 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 36717 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 647-48 chr2 114368555 114369020 + 2 NA Intergenic L1MEd|LINE|L1 -73854 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 548-81 chr15 47284767 47285149 + 2 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 100869 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 611-141 chr7 110583630 110584050 + 2 NA Intergenic L1MC5|LINE|L1 -507166 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 475-269 chr8 8559160 8559519 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -142598 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 387-47 chr11 6852426 6852766 + 2 NA Intergenic L2c|LINE|L2 6913 NM_178168 144124 Hs.447478 NM_178168 ENSG00000166363 OR10A5 JCG6|OR10A1|OR11-403 olfactory receptor family 10 subfamily A member 5 protein-coding 408-48 chr10 107497638 107497934 + 2 NA Intergenic MLT2D|LTR|ERVL -333080 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 346-470 chr7 97704825 97705065 + 2 NA Intergenic L1PREC2|LINE|L1 -27141 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 347-216 chr2 57011397 57011631 + 2 NA Intergenic L1MC1|LINE|L1 -825744 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 244-97 chr14 71442384 71442568 + 2 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 3537 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 128-70 chr7 44776632 44776715 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -20008 NM_021130 5478 Hs.356331 NM_021130 ENSG00000196262 PPIA CYPA|CYPH|HEL-S-69p peptidylprolyl isomerase A protein-coding 349-419 chr5 89789051 89789238 + 2 NA Intergenic LTR40b|LTR|ERVL 227576 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 153-71 chr3 193741765 193741890 + 2 NA Intergenic Intergenic 102182 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 439-188 chr3 118375987 118376289 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -265630 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 338-521 chr7 151493509 151493773 + 2 NA intron (NM_005614, intron 1 of 7) intron (NM_005614, intron 1 of 7) 26254 NM_005614 6009 Hs.283521 NM_005614 ENSG00000106615 RHEB RHEB2 Ras homolog, mTORC1 binding protein-coding 520-334 chrX 87840205 87840537 + 2 NA Intergenic L1PBa|LINE|L1 322569 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 351-120 chr14 52359512 52359857 + 2 NA Intergenic L1MC5a|LINE|L1 45372 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 326-222 chr19 45538757 45539059 + 2 NA intron (NM_001017989, intron 1 of 1) THE1D|LTR|ERVL-MaLR 31429 NM_003370 7408 Hs.515469 NM_003370 ENSG00000125753 VASP - vasodilator stimulated phosphoprotein protein-coding 361-90 chr11 114789268 114789508 + 2 NA Intergenic MADE2|DNA|TcMar-Mariner 110861 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 277-328 chr5 67349478 67349708 + 2 NA Intergenic L1MA8|LINE|L1 -152794 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 405-51 chr11 105416412 105416659 + 2 NA Intergenic Intergenic -193538 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 312-295 chr20 49627167 49627365 + 2 NA Intergenic MIR3|SINE|MIR -59129 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 409-29 chr10 61537246 61537617 + 2 NA Intergenic Intergenic 57390 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 224-25 chr1 238517521 238517669 + 2 NA Intergenic Intergenic -31578 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 386-368 chr8 137323607 137323840 + 2 NA Intergenic Intergenic 89865 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 335-16 chr1 103159765 103160045 + 2 NA Intergenic L2a|LINE|L2 -51383 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 484-140 chr2 145664530 145664862 + 2 NA Intergenic Intergenic -922361 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 396-354 chr8 107527125 107527346 + 2 NA Intergenic Intergenic -29317 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 388-61 chr11 50660525 50660849 + 2 NA Intergenic ALR/Alpha|Satellite|centr 251540 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 296-163 chr15 100527635 100527888 + 2 NA intron (NM_001290341, intron 2 of 13) intron (NM_001290341, intron 2 of 13) 16525 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 537-94 chr18 77242459 77242836 + 2 NA Intergenic Intergenic -7201 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 259-190 chr2 33655668 33655844 + 2 NA Intergenic MER52-int|LTR|ERV1 -51130 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 301-341 chr4 187075972 187076133 + 2 NA Intergenic AluSp|SINE|Alu -125934 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 308-347 chr4 91259913 91260140 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 1017276 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 493-63 chr12 113550599 113550956 + 2 NA Intergenic Intergenic 78774 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 367-200 chr2 75258248 75258506 + 2 NA Intergenic LTR9B|LTR|ERV1 -58857 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 262-167 chr17 48688286 48688541 + 2 NA Intergenic AluSx1|SINE|Alu 34105 NM_032391 84366 Hs.116467 NM_032391 ENSG00000159182 PRAC1 C17orf92|PRAC PRAC1 small nuclear protein protein-coding 466-37 chr10 109479689 109480099 + 2 NA Intergenic Intergenic 443352 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 275-216 chr2 220522436 220522644 + 2 NA Intergenic Intergenic -615975 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 236-161 chr2 18401314 18401498 + 2 NA Intergenic Intergenic 159247 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 330-308 chr2 204091658 204091977 + 2 NA Intergenic L1MA9|LINE|L1 155069 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 209-208 chr3 135251321 135251502 + 2 NA intron (NM_004441, intron 15 of 15) intron (NM_004441, intron 15 of 15) 456151 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 605-104 chr6 161676813 161677235 + 2 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 206047 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 305-207 chr17 82220444 82220619 + 2 NA Intergenic AluSx|SINE|Alu -7689 NM_001367828 284001 Hs.631724 NM_152675 ENSG00000176155 CCDC57 - coiled-coil domain containing 57 protein-coding 413-157 chr2 183645672 183646034 + 2 NA Intergenic Intergenic 521410 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 339-278 chr2 136550897 136551223 + 2 NA Intergenic L1MB7|LINE|L1 -214485 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 217-53 chr10 102217518 102217697 + 2 NA Intergenic L1ME4a|LINE|L1 -8692 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 362-92 chr11 83786366 83786701 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -104108 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 245-94 chr12 40644377 40644537 + 2 NA Intergenic Intergenic -47982 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 695-18 chr10 107225214 107225770 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -60786 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 313-371 chr3 194779061 194779355 + 2 NA intron (NR_037891, intron 3 of 3) L2c|LINE|L2 -10499 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 238-72 chr11 92142907 92143080 + 2 NA Intergenic L1MA9|LINE|L1 -82041 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 199-6 chr1 76696354 76696521 + 2 NA Intergenic L1ME3D|LINE|L1 82830 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 272-134 chr15 62989037 62989206 + 2 NA Intergenic Intergenic -53626 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 319-205 chr18 53834718 53834899 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -253749 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 271-238 chr21 21553591 21553791 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 183628 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 231-23 chr1 198367715 198367865 + 2 NA Intergenic Intergenic 173155 NM_133262 127124 Hs.127743 NM_133262 ENSG00000151418 ATP6V1G3 ATP6G3|Vma10 ATPase H+ transporting V1 subunit G3 protein-coding 373-312 chr5 19119425 19119667 + 2 NA Intergenic L1PA13|LINE|L1 766726 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 387-328 chr7 4088458 4088729 + 2 NA intron (NM_152744, intron 22 of 44) L1MEd|LINE|L1 -41092 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 1160 chr11 54939966 54940761 + 2 NA Intergenic ALR/Alpha|Satellite|centr 233531 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 147-68 chr5 2550863 2550965 + 2 NA Intergenic Intergenic -161677 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 663-14 chr11 15733814 15734290 + 2 NA Intergenic Intergenic 90167 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 760-42 chr20 60800056 60800638 + 2 NA Intergenic L1MC3|LINE|L1 235785 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 397-150 chr2 35407766 35408022 + 2 NA Intergenic Intergenic -63511 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 578 chr1 11474366 11474801 + 2 NA Intergenic Intergenic -4572 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 376-361 chr6 168979872 168980158 + 2 NA Intergenic L1MC|LINE|L1 -15633 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 291-246 chr2 208472652 208472844 + 2 NA intron (NM_005048, intron 9 of 12) intron (NM_005048, intron 9 of 12) 65918 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 156-76 chr4 133340946 133341037 + 2 NA Intergenic L1MB1|LINE|L1 191697 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 1066-15 chr3 122149795 122150703 + 2 NA Intergenic L1ME3G|LINE|L1 -33419 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 397-338 chr8 86745068 86745334 + 2 NA Intergenic LTR80B|LTR|ERVL -1526 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 212-61 chr11 34533617 34533776 + 2 NA Intergenic Intergenic -19902 NM_001422 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 339-119 chr12 8669459 8669638 + 2 NA Intergenic Intergenic -6722 NM_001297711 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 359-46 chr10 26124855 26125056 + 2 NA intron (NM_017433, intron 18 of 34) intron (NM_017433, intron 18 of 34) -91352 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 292-142 chr14 69975984 69976206 + 2 NA intron (NM_001034852, intron 4 of 11) MER117|DNA|hAT-Charlie -2038 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 352-278 chr20 17306669 17306929 + 2 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 79759 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 317-523 chr9 25322494 25322687 + 2 NA Intergenic Intergenic 356268 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 144-64 chr3 171453074 171453211 + 2 NA intron (NM_001161563, intron 1 of 31) intron (NM_001161563, intron 1 of 31) 7263 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 306-382 chr5 18216497 18216717 + 2 NA Intergenic Intergenic 409333 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 334-62 chr10 75553851 75554165 + 2 NA intron (NM_001305581, intron 2 of 6) L1MCc|LINE|L1 1550 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 272-478 chr9 94571391 94571632 + 2 NA exon (NM_003837, exon 4 of 7) exon (NM_003837, exon 4 of 7) 16466 NR_121567 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 ncRNA 351-167 chr17 5887886 5888109 + 2 NA intron (NR_040000, intron 2 of 3) L1M7|LINE|L1 115763 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 491-45 chr12 5123474 5123926 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 79821 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 339-558 chr8 29248328 29248581 + 2 NA intron (NM_015254, intron 1 of 39) THE1B|LTR|ERVL-MaLR 14616 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 228-166 chr2 82254681 82254903 + 2 NA Intergenic L1PA11|LINE|L1 -602011 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 297-154 chr15 95833754 95833964 + 2 NA Intergenic Intergenic 293982 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 377-216 chr2 126417754 126418043 + 2 NA Intergenic L1M4c|LINE|L1 -238037 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 273-324 chr4 64453551 64453812 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -44221 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 117-2 chr1 232282118 232282230 + 2 NA Intergenic Intergenic 233434 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 522-33 chr10 126823171 126823623 + 2 NA Intergenic Intergenic -82012 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 341-265 chr2 130936369 130936583 + 2 NA intron (NM_001367493, intron 3 of 13) L1MB5|LINE|L1 99562 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 345-304 chr20 4564551 4564746 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -121808 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 444-74 chr15 57079354 57079743 + 2 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -139882 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 325-373 chr3 188405176 188405487 + 2 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 163335 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 292-203 chr2 29848791 29848992 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 72695 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 346-102 chr12 37862235 37862421 + 2 NA Intergenic ALR/Alpha|Satellite|centr -454446 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 219-345 chr7 113554307 113554497 + 2 NA Intergenic L1ME2z|LINE|L1 364607 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 762-19 chr12 83134815 83135400 + 2 NA TTS (NM_001320321) TTS (NM_001320321) 447952 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 154-44 chr19 6748954 6749037 + 2 NA intron (NR_110231, intron 11 of 14) MIR|SINE|MIR 9315 NM_001288963 9322 Hs.515094 NM_004240 ENSG00000125733 TRIP10 CIP4|HSTP|STOT|STP|TRIP-10 thyroid hormone receptor interactor 10 protein-coding 259-345 chr6 66107062 66107269 + 2 NA Intergenic L1MEf|LINE|L1 319286 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 744-47 chr4 23463654 23464058 + 2 NA Intergenic MLT2A1|LTR|ERVL 417436 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 295-132 chr14 68678709 68678952 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) -50043 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 330-383 chr4 92131038 92131290 + 2 NA Intergenic L1MA4A|LINE|L1 146138 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 377-300 chr4 177198051 177198415 + 2 NA Intergenic L1MA1|LINE|L1 -111641 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 418-247 chr6 130717521 130717810 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -109740 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 364-369 chr5 158111163 158111411 + 2 NA Intergenic Intergenic -252142 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 267-76 chr12 3814851 3815059 + 2 NA intron (NM_020367, intron 6 of 7) L1ME3Cz|LINE|L1 58444 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 332-46 chr10 10402049 10402314 + 2 NA Intergenic MER73|LTR|ERVL 60168 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 214-304 chr7 69453708 69453837 + 2 NA Intergenic AluJb|SINE|Alu 143852 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 224-82 chr14 48028414 48028613 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -233499 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 340-480 chr6 81075203 81075448 + 2 NA Intergenic Intergenic 677356 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 679-106 chr8 89279126 89279626 + 2 NA Intergenic Intergenic 478335 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 504-67 chr14 44772350 44772718 + 2 NA intron (NR_146457, intron 2 of 4) intron (NR_146457, intron 2 of 4) 26592 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 204-126 chr18 54800227 54800369 + 2 NA Intergenic L1ME4b|LINE|L1 -28179 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 241-250 chr3 153432789 153432959 + 2 NA intron (NR_146713, intron 5 of 6) intron (NR_146713, intron 5 of 6) -51621 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 284-224 chr2 223702016 223702230 + 2 NA Intergenic Intergenic -99762 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 1032-2 chr10 108923808 108924561 + 2 NA Intergenic Intergenic -854891 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 227-255 chr4 65864915 65865041 + 2 NA Intergenic Intergenic -194483 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 336-16 chr1 57956904 57957109 + 2 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 96425 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 534-7 chr1 89383092 89383595 + 2 NA intron (NM_198460, intron 8 of 10) intron (NM_198460, intron 8 of 10) 19466 NM_198460 163351 Hs.254338 NM_198460 ENSG00000183347 GBP6 - guanylate binding protein family member 6 protein-coding 626-9 chr1 174213543 174213985 + 2 NA intron (NM_001366445, intron 1 of 13) L1MA3|LINE|L1 54244 NM_001366446 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 554-165 chr4 149095742 149096244 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -58302 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 243-298 chr3 115252090 115252281 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -104897 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 229-372 chr7 119137326 119137522 + 2 NA Intergenic L1MB7|LINE|L1 769951 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 546-2 chr1 56029862 56030231 + 2 NA Intergenic MIRb|SINE|MIR 84959 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 370-27 chr1 222163473 222163792 + 2 NA Intergenic Intergenic -185112 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 299-316 chr4 35316349 35316548 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 927491 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 462-9 chr1 101156714 101157080 + 2 NA Intergenic Intergenic 79631 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 213-142 chr2 101107563 101107725 + 2 NA intron (NM_001102426, intron 1 of 19) L1MC3|LINE|L1 43803 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 341-51 chr10 4797701 4797999 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -28327 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 112-8 chr11 132857343 132857447 + 2 NA intron (NM_001319104, intron 1 of 6) Charlie1a|DNA|hAT-Charlie 86242 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 596-127 chr4 55531944 55532378 + 2 NA intron (NM_004898, intron 1 of 22) L1M3|LINE|L1 13771 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 270-94 chr13 40041811 40042066 + 2 NA Intergenic Intergenic -139871 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 557-187 chr7 81640889 81641270 + 2 NA intron (NR_126025, intron 1 of 10) MER34A|LTR|ERV1 -14863 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 597-133 chr8 131391095 131391653 + 2 NA Intergenic Intergenic -350465 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 382-58 chr11 29725309 29725665 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 106685 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 357-53 chr10 127326557 127326753 + 2 NA intron (NM_001290223, intron 29 of 51) Tigger1|DNA|TcMar-Tigger -130064 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 237-215 chr21 14128126 14128294 + 2 NA intron (NM_001303001, intron 7 of 7) intron (NM_001303001, intron 7 of 7) 78739 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 304-205 chr18 4820883 4821111 + 2 NA Intergenic Intergenic -260185 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 259-120 chr14 61022940 61023093 + 2 NA intron (NR_033344, intron 5 of 16) L2c|LINE|L2 -41326 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 333-350 chr3 72148353 72148621 + 2 NA Intergenic Intergenic -2770 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 393-101 chr14 65133766 65134029 + 2 NA Intergenic Intergenic -31202 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 231-6 chr1 37073229 37073388 + 2 NA Intergenic Charlie15a|DNA|hAT-Charlie -38793 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 182-153 chr6 119282393 119282521 + 2 NA intron (NM_005907, intron 5 of 12) intron (NM_005907, intron 5 of 12) 67304 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 286-224 chr2 165774326 165774585 + 2 NA intron (NM_004482, intron 1 of 10) intron (NM_004482, intron 1 of 10) 19792 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 281-214 chr2 89804863 89805037 + 2 NA Intergenic Intergenic -167043 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 293-140 chr16 10500684 10500912 + 2 NA Intergenic PABL_A|LTR|ERV1 27400 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 642-36 chr15 62606480 62606869 + 2 NA Intergenic Intergenic 38507 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 338-92 chr11 8439078 8439310 + 2 NA intron (NM_001352388, intron 11 of 14) L2c|LINE|L2 154782 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 786-46 chr4 78357871 78358383 + 2 NA intron (NM_001166133, intron 20 of 41) intron (NM_001166133, intron 20 of 41) 69142 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 207-284 chr8 36082685 36082854 + 2 NA Intergenic MER39B|LTR|ERV1 -372449 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 254-63 chr11 84537034 84537190 + 2 NA intron (NM_001351274, intron 5 of 26) AluSx|SINE|Alu 183830 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 372-295 chr21 29210942 29211140 + 2 NA intron (NR_027072, intron 1 of 1) L1MB3|LINE|L1 17547 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 412-94 chr14 66306676 66307020 + 2 NA Intergenic MIRb|SINE|MIR -179523 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 555-145 chr4 63894561 63894978 + 2 NA Intergenic Intergenic 514681 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 763-69 chrX 80893453 80894105 + 2 NA Intergenic L1PREC2|LINE|L1 -83902 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 312-515 chr8 76217885 76218152 + 2 NA Intergenic L1ME3|LINE|L1 -188636 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 232-43 chr10 107772809 107773017 + 2 NA Intergenic L1PREC2|LINE|L1 296380 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 421-167 chr20 61494331 61494689 + 2 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -4911 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 191-42 chr12 74975397 74975577 + 2 NA Intergenic L1MEc|LINE|L1 234261 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 261-199 chr2 158337953 158338159 + 2 NA TTS (NM_001301685) TTS (NM_001301685) 118697 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 567-188 chr8 101552097 101552564 + 2 NA intron (NM_024915, intron 2 of 15) intron (NM_024915, intron 2 of 15) 59891 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 539-89 chr17 52420902 52421351 + 2 NA intron (NR_146898, intron 1 of 3) L2b|LINE|L2 30604 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 241-180 chr2 40980990 40981200 + 2 NA Intergenic Intergenic -468660 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 232-360 chr7 69139207 69139424 + 2 NA Intergenic L1MEd|LINE|L1 458309 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 333-233 chr2 46977727 46977920 + 2 NA intron (NM_001288951, intron 4 of 20) AluJr|SINE|Alu -35968 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 297-488 chr8 112401334 112401548 + 2 NA intron (NM_001363185, intron 31 of 66) intron (NM_001363185, intron 31 of 66) -242052 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 390-134 chr16 66278982 66279215 + 2 NA Intergenic L1PA15-16|LINE|L1 -87593 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 299-291 chr3 99445044 99445240 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -193452 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 508-171 chr4 86134547 86134904 + 2 NA intron (NR_110879, intron 3 of 3) L1PA3|LINE|L1 14919 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 353-460 chr6 122686724 122687011 + 2 NA intron (NM_181795, intron 3 of 4) L1MA2|LINE|L1 34138 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 226-71 chr12 41290997 41291162 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 102759 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 559-20 chr10 126325240 126325608 + 2 NA intron (NM_001288974, intron 2 of 18) L2|LINE|L2 63053 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 500-256 chr6 120907447 120907868 + 2 NA Intergenic L1ME1|LINE|L1 426823 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 363-420 chr7 67555900 67556203 + 2 NA Intergenic Intergenic 220075 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 214-317 chr8 70420119 70420306 + 2 NA Intergenic Intergenic -15995 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 213-202 chr4 58200348 58200534 + 2 NA Intergenic Intergenic 335887 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 310-547 chr9 29300579 29300886 + 2 NA Intergenic MIR|SINE|MIR -87131 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 571-98 chr21 23283135 23283548 + 2 NA Intergenic Intergenic 101494 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 370-232 chr2 66818452 66818813 + 2 NA Intergenic Intergenic -85804 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 328-57 chr10 96919548 96919782 + 2 NA intron (NM_001170766, intron 4 of 8) L1MB2|LINE|L1 86720 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 426-191 chr3 162309118 162309487 + 2 NA Intergenic Intergenic 812494 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 267-69 chr11 92799996 92800203 + 2 NA exon (NM_001367949, exon 10 of 28) exon (NM_001367949, exon 10 of 28) 115529 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 235-20 chr1 170913733 170913874 + 2 NA Intergenic Intergenic -21668 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 371-82 chr12 61553917 61554282 + 2 NA Intergenic MIR3|SINE|MIR 638740 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 306-343 chr4 25225037 25225253 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -8888 NR_144633 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 287-201 chr2 114095619 114095775 + 2 NA Intergenic L1M4|LINE|L1 -115713 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 313-566 chrX 22495291 22495572 + 2 NA intron (NR_073010, intron 4 of 11) intron (NR_073010, intron 4 of 11) 222518 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 275-175 chr2 17416002 17416175 + 2 NA Intergenic L1MC5a|LINE|L1 102352 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 496-314 chrX 112621691 112622060 + 2 NA Intergenic Intergenic 58063 NM_178175 340596 Hs.297420 NM_178175 ENSG00000182508 LHFPL1 - LHFPL tetraspan subfamily member 1 protein-coding 499-155 chr22 27517502 27517943 + 2 NA Intergenic Intergenic 207071 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 297-11 chr1 59326705 59326943 + 2 NA exon (NM_001350793, exon 4 of 18) exon (NM_001350793, exon 4 of 18) 16792 NM_001350790 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 373-360 chr6 71613442 71613633 + 2 NA Intergenic L2c|LINE|L2 192510 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 364-274 chr3 61160572 61160833 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 90750 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 263-339 chr5 153952066 153952269 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -53180 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 514-68 chr12 127141825 127142286 + 2 NA Intergenic L1PA8A|LINE|L1 -81658 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 157-100 chr4 177395325 177395449 + 2 NA Intergenic Intergenic 47050 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 294-458 chr8 50613622 50613866 + 2 NA intron (NR_135797, intron 15 of 20) intron (NR_135797, intron 15 of 20) 449613 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 153-96 chr8 53749056 53749146 + 2 NA intron (NM_213620, intron 12 of 13) L2c|LINE|L2 93941 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 358-454 chr7 119286427 119286684 + 2 NA Intergenic Intergenic 620820 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 337-542 chr8 91691922 91692102 + 2 NA Intergenic Intergenic 325668 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 142-7 chr10 37144606 37144725 + 2 NA intron (NM_052997, intron 7 of 35) intron (NM_052997, intron 7 of 35) 18808 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 270-273 chr4 97172405 97172626 + 2 NA Intergenic Intergenic -194411 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 441-85 chr15 27695446 27695717 + 2 NA Intergenic Intergenic 403734 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 331-84 chr11 30972001 30972227 + 2 NA intron (NM_001367979, intron 20 of 38) L1MA4A|LINE|L1 20572 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 357-180 chr19 53894952 53895192 + 2 NA intron (NM_002739, intron 9 of 17) L2a|LINE|L2 12875 NM_002739 5582 Hs.631564 NM_002739 ENSG00000126583 PRKCG PKC-gamma|PKCC|PKCG|PKCI(3)|PKCgamma|SCA14 protein kinase C gamma protein-coding 325-410 chr4 127324322 127324586 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -308503 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 340-245 chr2 45142156 45142372 + 2 NA Intergenic Intergenic 112677 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 213-78 chr13 56217936 56218094 + 2 NA Intergenic Intergenic -922903 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 222-366 chr8 83127481 83127698 + 2 NA Intergenic Intergenic 215485 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 197-49 chr12 117713041 117713187 + 2 NA intron (NM_173598, intron 4 of 19) (AGAT)n|Simple_repeat|Simple_repeat 255876 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 248-137 chr16 10477032 10477191 + 2 NA intron (NM_024997, intron 10 of 11) L1P3|LINE|L1 51087 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 264-189 chr2 3108530 3108787 + 2 NA intron (NR_110228, intron 3 of 6) intron (NR_110228, intron 3 of 6) 17368 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 172-39 chr15 38908804 38908940 + 2 NA Intergenic L1M3f|LINE|L1 212274 NR_160786 314-194 chr15 77699736 77700040 + 2 NA intron (NM_001301192, intron 2 of 4) intron (NM_001301192, intron 2 of 4) -3393 NM_001301199 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 265-274 chr4 72237690 72237877 + 2 NA Intergenic MER102c|DNA|hAT-Charlie 198651 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 286-9 chr1 49774451 49774688 + 2 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 249385 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 321-584 chr8 139778019 139778233 + 2 NA intron (NM_001160372, intron 21 of 22) L1MC1|LINE|L1 -75003 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 469-302 chrX 124582239 124582547 + 2 NA intron (NM_014253, intron 11 of 30) L1PA16|LINE|L1 236111 NM_002351 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 362-40 chr1 242159043 242159245 + 2 NA intron (NM_001320272, intron 6 of 10) L1ME1|LINE|L1 -160046 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 228-365 chr9 27696884 27697028 + 2 NA Intergenic MIR1_Amn|SINE|MIR -123090 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 684-6 chr1 102314865 102315275 + 2 NA Intergenic L1MC1|LINE|L1 -317836 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 363-106 chr12 88235920 88236272 + 2 NA Intergenic L1M1|LINE|L1 93789 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 389-340 chr7 31818368 31818748 + 2 NA intron (NM_001191059, intron 15 of 18) intron (NM_001191059, intron 15 of 18) 131343 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 286-160 chr17 55879428 55879648 + 2 NA Intergenic L1M5|LINE|L1 128433 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 183-112 chr4 187409228 187409337 + 2 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 38634 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 314-286 chr2 77463067 77463332 + 2 NA intron (NR_146416, intron 1 of 1) Tigger3a|DNA|TcMar-Tigger 59177 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 564-61 chr15 53224060 53224536 + 2 NA Intergenic Intergenic 107933 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 296-91 chr12 13553247 13553412 + 2 NA 3' UTR (NM_000834, exon 13 of 13) 3' UTR (NM_000834, exon 13 of 13) -176584 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 340-570 chr9 93604919 93605166 + 2 NA intron (NM_005392, intron 1 of 21) L1MC1|LINE|L1 10201 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 373-79 chr11 50279206 50279462 + 2 NA TTS (NR_003034) TTS (NR_003034) 19128 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 249-431 chr8 126711842 126712073 + 2 NA Intergenic LTR78|LTR|ERV1 -153479 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 507-74 chr13 69425412 69425755 + 2 NA Intergenic L1PB1|LINE|L1 203237 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 255-300 chr4 92657429 92657672 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 353151 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 226-34 chr10 17005960 17006118 + 2 NA intron (NM_001081, intron 28 of 66) MLT1B|LTR|ERVL-MaLR 123778 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 409-31 chr10 82275828 82276072 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -43030 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 322-523 chr8 79378311 79378549 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie 46242 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 342-171 chr15 100751490 100751825 + 2 NA Intergenic MLT2D|LTR|ERVL -98095 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 384-246 chr3 189780299 189780662 + 2 NA intron (NM_003722, intron 3 of 13) intron (NM_003722, intron 3 of 13) -9179 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 277-406 chr8 65280469 65280727 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -100258 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 289-59 chr10 65941873 65942074 + 2 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 370548 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 444-122 chr2 119091684 119092037 + 2 NA Intergenic L1MEf|LINE|L1 66891 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 374-150 chr17 81639382 81639659 + 2 NA intron (NM_001290212, intron 1 of 3) MLT1B|LTR|ERVL-MaLR 2349 NM_001290212 83882 Hs.208219 NM_031945 ENSG00000182612 TSPAN10 OCSP tetraspanin 10 protein-coding 494-83 chr16 26432174 26432562 + 2 NA Intergenic Intergenic 407131 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 276-436 chr7 112937037 112937232 + 2 NA intron (NM_152556, intron 1 of 4) intron (NM_152556, intron 1 of 4) 2741 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 286-106 chr13 63943239 63943456 + 2 NA Intergenic MER39|LTR|ERV1 -99222 NR_130763 102723968 Hs.551671 NR_130763 ENSG00000219926 LOC102723968 - uncharacterized LOC102723968 ncRNA 318-264 chr2 60790341 60790567 + 2 NA intron (NM_022894, intron 15 of 21) intron (NM_022894, intron 15 of 21) 34186 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 317-59 chr10 80655193 80655362 + 2 NA Intergenic Intergenic 5480 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 316-228 chr18 69733231 69733458 + 2 NA intron (NM_152721, intron 5 of 7) L1ME4b|LINE|L1 214529 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 363-19 chr1 163414655 163415009 + 2 NA Intergenic AluJb|SINE|Alu 8359 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 575-199 chr8 116192078 116192582 + 2 NA intron (NR_046215, intron 4 of 13) MLT1E|LTR|ERVL-MaLR 132729 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 255-117 chr14 87172383 87172554 + 2 NA Intergenic Intergenic 266690 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 527-199 chr5 7472124 7472471 + 2 NA intron (NM_020546, intron 2 of 24) L1ME4a|LINE|L1 76159 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 678-99 chr7 111571012 111571429 + 2 NA Intergenic L1MA1|LINE|L1 -8703 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 541-7 chr1 81780796 81781182 + 2 NA intron (NM_001366008, intron 4 of 26) MIRb|SINE|MIR -19387 NM_001350699 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 479-158 chr4 45236617 45236919 + 2 NA Intergenic Intergenic -510134 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 359-500 chr8 141480070 141480345 + 2 NA intron (NR_102364, intron 7 of 26) intron (NR_102364, intron 7 of 26) 27022 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 200-65 chr13 96555309 96555488 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 128169 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 510-112 chr18 5924823 5925157 + 2 NA Intergenic MIRc|SINE|MIR -29036 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 410-86 chr14 71289769 71290098 + 2 NA Intergenic MER41B|LTR|ERV1 -30543 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 387-345 chr7 62734401 62734770 + 2 NA Intergenic ALR/Alpha|Satellite|centr 569471 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 322-75 chr10 90598856 90599086 + 2 NA Intergenic Intergenic -58166 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 171-46 chr17 62331249 62331346 + 2 NA Intergenic Intergenic -38921 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 220-128 chr16 89027166 89027371 + 2 NA Intergenic L1MEc|LINE|L1 -50061 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 738-59 chr6 142487219 142487813 + 2 NA Intergenic Intergenic 150320 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 220-135 chr17 76914488 76914608 + 2 NA intron (NM_144677, intron 8 of 16) MLT1B|LTR|ERVL-MaLR 41901 NM_198955 146664 Hs.144531 NM_144677 ENSG00000167889 MGAT5B GnT-IX|GnT-VB alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B protein-coding 537-113 chr2 81980167 81980597 + 2 NA Intergenic Intergenic -513436 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 248-307 chr5 30318598 30318768 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 438123 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 405-195 chr22 43063183 43063555 + 2 NA intron (NR_027779, intron 8 of 11) intron (NR_027779, intron 8 of 11) 24784 NR_125362 100506679 Hs.706553 NR_125362 ENSG00000230319 LOC100506679 - uncharacterized LOC100506679 ncRNA 327-443 chr6 140539254 140539485 + 2 NA Intergenic Intergenic -144445 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 280-337 chr5 143946399 143946647 + 2 NA Intergenic L1PA15|LINE|L1 134362 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 428-233 chr5 53696408 53696806 + 2 NA Intergenic L1MA9|LINE|L1 123075 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 338-483 chr6 161308101 161308280 + 2 NA Intergenic LTR9B|LTR|ERV1 -34129 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 430-280 chr7 41351358 41351587 + 2 NA Intergenic Intergenic 249868 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 366-489 chrX 133872034 133872381 + 2 NA intron (NM_001164619, intron 1 of 6) intron (NM_001164619, intron 1 of 6) -25236 NR_148713 110806308 Hs.658628 NR_148713 ENSG00000286096 GPC3-AS1 - GPC3 antisense RNA 1 ncRNA 385-73 chr12 108030048 108030345 + 2 NA Intergenic (TCAC)n|Simple_repeat|Simple_repeat -99092 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 276-59 chr10 75711989 75712189 + 2 NA promoter-TSS (NR_132791) promoter-TSS (NR_132791) -366 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 342-489 chr7 80228755 80229011 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger 93099 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 308-273 chr20 62056625 62056813 + 2 NA intron (NM_003185, intron 1 of 14) intron (NM_003185, intron 1 of 14) -8083 NR_130463 100422838 NR_130463 ENSG00000265306 MIR3195 - microRNA 3195 ncRNA 374-221 chr20 24129114 24129357 + 2 NA Intergenic Intergenic -70532 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 285-19 chr1 189692316 189692569 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 783568 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 261-162 chr18 69853065 69853237 + 2 NA TTS (NM_001303619) TTS (NM_001303619) 94722 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 513-152 chr2 167218878 167219327 + 2 NA intron (NM_001199144, intron 3 of 8) intron (NM_001199144, intron 3 of 8) 31730 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 405-85 chr14 66741157 66741470 + 2 NA intron (NM_001024218, intron 2 of 21) L2a|LINE|L2 233906 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 343-43 chr10 19013956 19014246 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -34700 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 284-37 chr10 56650862 56651064 + 2 NA Intergenic MER21C|LTR|ERVL -289690 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 365-131 chr15 53241609 53241930 + 2 NA Intergenic LTR88a|LTR|Gypsy? 125404 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 405-201 chr3 70789676 70790054 + 2 NA Intergenic L1MD1|LINE|L1 275059 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 397-205 chr3 78440618 78440886 + 2 NA Intergenic Intergenic -391789 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 128-55 chr5 129863822 129863909 + 2 NA Intergenic Intergenic -40600 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 328-34 chr1 215778726 215778917 + 2 NA intron (NM_206933, intron 55 of 71) intron (NM_206933, intron 55 of 71) 211517 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 224-93 chr14 84828248 84828426 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -443595 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 243-73 chr11 82268341 82268561 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 135462 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 208-80 chr15 55053045 55053160 + 2 NA Intergenic L2b|LINE|L2 -3645 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 231-153 chr2 31601989 31602171 + 2 NA Intergenic L1PA11|LINE|L1 -21142 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 236-248 chr4 18515723 18515920 + 2 NA Intergenic Intergenic -493946 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 350-9 chr1 89222159 89222402 + 2 NA Intergenic L1PA14|LINE|L1 -23338 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 466-55 chr11 113133875 113134231 + 2 NA intron (NM_181351, intron 1 of 18) L1MB2|LINE|L1 139848 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 466-268 chr8 89571260 89571620 + 2 NA Intergenic AluSx1|SINE|Alu 186271 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 333-469 chr5 116173985 116174258 + 2 NA intron (NM_001308080, intron 5 of 6) L2a|LINE|L2 -81622 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 313-161 chr14 87709941 87710244 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -54798 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 465-140 chr2 153760507 153760920 + 2 NA Intergenic L1MA7|LINE|L1 -111209 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 415-292 chr8 123547353 123547734 + 2 NA Intergenic Intergenic -6337 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 531-240 chr8 91424395 91424782 + 2 NA Intergenic L1M3|LINE|L1 175269 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 227-266 chr4 122466635 122466798 + 2 NA Intergenic Intergenic -10221 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 873-20 chr21 35307213 35307821 + 2 NA Intergenic Intergenic -258219 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 337-361 chr3 106753283 106753522 + 2 NA Intergenic L1MA3|LINE|L1 487236 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 560-12 chr10 17188520 17188942 + 2 NA intron (NM_004412, intron 1 of 10) Kanga2_a|DNA|TcMar-Tc2 12941 NM_001321006 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 232-122 chr16 60037522 60037680 + 2 NA intron (NR_110917, intron 1 of 3) L1M1|LINE|L1 182248 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 298-313 chr4 12789175 12789386 + 2 NA Intergenic Intergenic 565829 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 324-548 chr8 126209703 126210020 + 2 NA Intergenic L1PA15|LINE|L1 -115634 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 264-93 chr12 44194733 44194910 + 2 NA intron (NM_001286213, intron 3 of 6) AluJb|SINE|Alu 358740 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 448-288 chr8 113655711 113655965 + 2 NA Intergenic Intergenic -218899 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 255-216 chr2 184104155 184104315 + 2 NA Intergenic Intergenic -274740 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 295-264 chr21 18034513 18034717 + 2 NA intron (NM_001204178, intron 2 of 5) LTR105_Mam|LTR|ERVL 117275 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 461-72 chr13 83266392 83266845 + 2 NA Intergenic L1MB8|LINE|L1 615775 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 514-244 chr5 169799693 169799959 + 2 NA intron (NR_156756, intron 25 of 52) AluJr|SINE|Alu 162551 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 312-48 chr10 61784852 61785106 + 2 NA Intergenic LTR67B|LTR|ERVL -116720 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 277-308 chr5 22258567 22258761 + 2 NA intron (NM_001364104, intron 2 of 13) Tigger3c|DNA|TcMar-Tigger -44814 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 285-54 chr11 15001275 15001459 + 2 NA Intergenic L1MEc|LINE|L1 -29016 NR_125898 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 221-92 chr15 59202110 59202290 + 2 NA intron (NM_004998, intron 16 of 27) intron (NM_004998, intron 16 of 27) -4643 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 583-62 chr15 92054840 92055292 + 2 NA intron (NR_135775, intron 2 of 10) L1PA10|LINE|L1 200762 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 520-264 chr6 155857666 155858126 + 2 NA Intergenic L1ME1|LINE|L1 -88901 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 518-187 chr3 126797661 126798011 + 2 NA intron (NM_032343, intron 4 of 7) intron (NM_032343, intron 4 of 7) 93596 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 315-297 chr21 44738554 44738818 + 2 NA Intergenic Intergenic -27114 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|ECTD14|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding 264-234 chr20 14436236 14436411 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -98656 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 327-504 chr8 135551309 135551549 + 2 NA intron (NM_006558, intron 4 of 8) L1M4|LINE|L1 93973 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 528-188 chr4 153866450 153866809 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -77546 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 531-236 chr8 40606598 40606980 + 2 NA intron (NM_001135731, intron 4 of 5) L1PB1|LINE|L1 -263426 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 278-105 chr14 46926020 46926218 + 2 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -274338 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 213-82 chr13 86692019 86692226 + 2 NA Intergenic Intergenic -219798 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 286-194 chr2 33774449 33774621 + 2 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -46318 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 323-237 chr2 39994125 39994298 + 2 NA intron (NR_038441, intron 2 of 4) Tigger3|DNA|TcMar-Tigger 76577 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 342-192 chr17 57218384 57218620 + 2 NA Intergenic L1MCa|LINE|L1 -37349 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 299-485 chr9 77992901 77993169 + 2 NA intron (NM_002072, intron 1 of 6) intron (NM_002072, intron 1 of 6) 38776 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 283-341 chr4 176584773 176584956 + 2 NA Intergenic Intergenic 208058 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 240-417 chr8 114561699 114561919 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 1106204 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 497-147 chr20 5281337 5281679 + 2 NA Intergenic Intergenic 35224 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 479-14 chr1 246251024 246251317 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 166242 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 552-47 chr12 80326671 80327168 + 2 NA intron (NM_001368062, intron 39 of 62) intron (NM_001368062, intron 39 of 62) -117316 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 310-431 chr5 153188700 153188962 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -216482 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 417-284 chr8 84096153 84096512 + 2 NA Intergenic L3|LINE|CR1 -86455 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 320-201 chr17 14414380 14414669 + 2 NA Intergenic MER57A-int|LTR|ERV1 110784 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 592-172 chr8 76280923 76281365 + 2 NA Intergenic MIR|SINE|MIR -125510 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 134-11 chr10 58103340 58103444 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack 164502 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 541-117 chr2 80474762 80475175 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 161589 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 290-330 chr5 26869909 26870169 + 2 NA Intergenic Intergenic 168547 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 356-387 chr5 24140221 24140483 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 189004 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 580-5 chr1 147371143 147371605 + 2 NA Intergenic L1M5|LINE|L1 128232 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 246-286 chr4 30822515 30822679 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 102228 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 223-129 chr18 48046163 48046320 + 2 NA intron (NM_001371286, intron 3 of 4) MER91B|DNA|hAT-Tip100 90907 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 254-297 chr5 15674707 15674897 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -59800 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 649-75 chr3 178589530 178590073 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 30951 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 894-45 chr7 33212476 33213047 + 2 NA intron (NM_198428, intron 5 of 22) L1MA3|LINE|L1 83197 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 374-87 chr13 62662452 62662813 + 2 NA Intergenic L2a|LINE|L2 134060 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 516-178 chr3 111041591 111041943 + 2 NA Intergenic L1MA4A|LINE|L1 28192 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 303-226 chr2 153658463 153658665 + 2 NA Intergenic Intergenic -179802 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 262-53 chr10 70704000 70704172 + 2 NA intron (NM_080722, intron 3 of 21) intron (NM_080722, intron 3 of 21) 31580 NM_139155 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 410-194 chr3 84302559 84302935 + 2 NA Intergenic Intergenic 566828 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 328-182 chr15 87241090 87241316 + 2 NA Intergenic Intergenic -252777 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 375-468 chrX 89126530 89126829 + 2 NA Intergenic L1PA13|LINE|L1 379454 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 446-273 chr7 22100799 22101104 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 92794 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 145-79 chr7 96835474 96835580 + 2 NA Intergenic L1PB1|LINE|L1 -125636 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 252-181 chr2 38746104 38746293 + 2 NA intron (NM_001031684, intron 6 of 7) intron (NM_001031684, intron 6 of 7) 5163 NM_001031684 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 346-339 chr4 9809398 9809712 + 2 NA Intergenic Intergenic 27921 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 310-462 chr6 147938018 147938221 + 2 NA Intergenic Intergenic -334209 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 234-158 chr2 14873664 14873865 + 2 NA Intergenic L1MEc|LINE|L1 241047 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 361-342 chr5 3470096 3470331 + 2 NA intron (NR_033898, intron 2 of 4) MSTD|LTR|ERVL-MaLR 17397 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 213-89 chr14 66611616 66611808 + 2 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 104305 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 291-231 chr2 117562019 117562227 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -252568 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 344-329 chr3 123866589 123866805 + 2 NA intron (NM_001321309, intron 2 of 32) intron (NM_001321309, intron 2 of 32) 17635 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 195-151 chr3 95934367 95934548 + 2 NA Intergenic Intergenic -251264 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 255-68 chr11 129601715 129601894 + 2 NA Intergenic L1PA8|LINE|L1 15465 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 428-27 chr10 81860067 81860459 + 2 NA Intergenic L1MB7|LINE|L1 -14931 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 349-423 chr5 115669534 115669771 + 2 NA intron (NR_104674, intron 1 of 4) L1MA2|LINE|L1 3000 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 250-77 chr11 111420826 111421072 + 2 NA Intergenic L2b|LINE|L2 -2763 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 275-239 chr3 3795062 3795321 + 2 NA intron (NR_149025, intron 1 of 5) L1ME4a|LINE|L1 -4240 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 402-241 chr4 97236242 97236503 + 2 NA Intergenic Intergenic -130554 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 272-181 chr2 40438390 40438585 + 2 NA intron (NM_001112802, intron 1 of 7) L2b|LINE|L2 -8183 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 551-197 chr7 106478476 106479006 + 2 NA Intergenic L1M4a1|LINE|L1 182417 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 276-145 chr14 46779830 46779995 + 2 NA Intergenic L1M5|LINE|L1 -128131 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 293-175 chr2 219277 219530 + 2 NA intron (NM_001282682, intron 10 of 10) MLT1A0|LTR|ERVL-MaLR 36937 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 367-461 chr8 115327545 115327808 + 2 NA Intergenic MIRb|SINE|MIR 340337 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 419-152 chr2 145051700 145052038 + 2 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 383902 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 321-566 chr8 106816829 106817048 + 2 NA Intergenic MIR3|SINE|MIR -46694 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 243-395 chr6 119082133 119082311 + 2 NA intron (NM_001288576, intron 1 of 15) MSTA|LTR|ERVL-MaLR -3558 NM_024581 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 338-376 chr4 43588790 43589068 + 2 NA Intergenic Intergenic -96386 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 387-153 chr2 2908873 2909120 + 2 NA intron (NR_110228, intron 5 of 6) intron (NR_110228, intron 5 of 6) 217030 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 397-139 chr2 14501188 14501558 + 2 NA Intergenic Intergenic -100415 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 332-171 chr15 97922974 97923232 + 2 NA Intergenic L1M5|LINE|L1 -37600 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 673-104 chr6 49444962 49445424 + 2 NA intron (NM_000255, intron 8 of 12) intron (NM_000255, intron 8 of 12) 18060 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 259-16 chr1 157760804 157760979 + 2 NA intron (NM_001159488, intron 7 of 8) L1PA15|LINE|L1 16241 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 220-236 chr3 102019183 102019322 + 2 NA Intergenic HAL1|LINE|L1 78393 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 324-287 chr2 155580567 155580783 + 2 NA Intergenic Intergenic 674256 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 410-181 chr22 48408358 48408701 + 2 NA Intergenic L1MC3|LINE|L1 -81024 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 726-58 chr4 99327528 99328068 + 2 NA Intergenic MER9a3|LTR|ERVK -6397 NM_001286650 125 Hs.4 NM_000668 ENSG00000196616 ADH1B ADH2|HEL-S-117 alcohol dehydrogenase 1B (class I), beta polypeptide protein-coding 333-339 chr22 49242362 49242539 + 2 NA Intergenic Intergenic 301016 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 382-441 chrX 29601404 29601663 + 2 NA intron (NM_014271, intron 5 of 10) MER92-int|LTR|ERV1 27255 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 635-8 chr1 177233703 177234188 + 2 NA intron (NM_021165, intron 2 of 7) intron (NM_021165, intron 2 of 7) 62987 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 345-192 chr16 59207698 59208011 + 2 NA Intergenic Intergenic -473538 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 216-186 chr2 195965099 195965283 + 2 NA intron (NM_018897, intron 17 of 64) L1MA3|LINE|L1 103646 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 329-530 chr7 19159108 19159306 + 2 NA Intergenic Intergenic -13786 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 362-145 chr14 53311748 53312043 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 158541 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 385-9 chr1 112377213 112377504 + 2 NA Intergenic L1M2|LINE|L1 -18856 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 197-28 chr10 51827363 51827499 + 2 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -127836 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 828-40 chr5 159301184 159301780 + 2 NA Intergenic MER34C_|LTR|ERV1 28991 NM_002187 3593 Hs.674 NM_002187 ENSG00000113302 IL12B CLMF|CLMF2|IL-12B|IMD28|IMD29|NKSF|NKSF2 interleukin 12B protein-coding 781-15 chr13 93012521 93013168 + 2 NA Intergenic Intergenic -32497 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 510-277 chr8 83315567 83315910 + 2 NA Intergenic AluY|SINE|Alu -88020 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 379-331 chr8 32420715 32421082 + 2 NA intron (NM_013962, intron 1 of 4) THE1D|LTR|ERVL-MaLR -19848 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 187-159 chr7 49527005 49527130 + 2 NA Intergenic Intergenic -246571 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 333-176 chr16 35727762 35728040 + 2 NA Intergenic HSAT4|Satellite|centr -18651 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 333-472 chr5 123742128 123742340 + 2 NA Intergenic Intergenic 196817 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 203-161 chr3 192478895 192479047 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -36051 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 417-193 chr4 37319315 37319629 + 2 NA intron (NM_001144990, intron 1 of 6) L1PA16|LINE|L1 74729 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 401-197 chr22 47860127 47860421 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 228600 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 197-13 chr1 155570332 155570491 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -7608 NM_018489 55870 Hs.491060 NM_018489 ENSG00000116539 ASH1L ASH1|ASH1L1|KMT2H|MRD52 ASH1 like histone lysine methyltransferase protein-coding 204-150 chr2 105829340 105829503 + 2 NA intron (NM_003581, intron 2 of 4) L1MC3|LINE|L1 -22426 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 408-288 chr6 6271699 6271972 + 2 NA intron (NM_000129, intron 3 of 14) intron (NM_000129, intron 3 of 14) 48856 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 484-288 chr9 103511888 103512215 + 2 NA Intergenic L1MD|LINE|L1 -187018 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 253-296 chr4 73008967 73009176 + 2 NA Intergenic L2a|LINE|L2 60645 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 211-275 chr7 46280706 46280892 + 2 NA Intergenic L1MCa|LINE|L1 -359527 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 424-83 chr15 83044106 83044422 + 2 NA intron (NM_001011885, intron 3 of 6) Tigger15a|DNA|TcMar-Tigger 22988 NM_025238 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 376-33 chr10 4615671 4615967 + 2 NA Intergenic MER21B|LTR|ERVL -40337 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 560-192 chr9 25420118 25420512 + 2 NA Intergenic L2a|LINE|L2 258543 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 570-157 chr5 67340378 67340786 + 2 NA Intergenic Intergenic -143783 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 231-156 chr2 35172390 35172553 + 2 NA Intergenic Intergenic -298934 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 308-179 chr17 11530776 11531076 + 2 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -67544 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 414-332 chr8 114008086 114008443 + 2 NA Intergenic AluJb|SINE|Alu -571325 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 215-176 chr21 15114831 15114956 + 2 NA Intergenic AluSz|SINE|Alu -49893 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 144-110 chrX 39900177 39900319 + 2 NA Intergenic Intergenic 62687 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 216 chr1 5097045 5097240 + 2 NA Intergenic Intergenic 442533 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 292-112 chr12 89375961 89376163 + 2 NA Intergenic Intergenic -23561 NM_001946 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 284-4 chr1 59468365 59468580 + 2 NA intron (NM_001350794, intron 6 of 14) intron (NM_001350794, intron 6 of 14) -47158 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 206-262 chr8 73533149 73533316 + 2 NA intron (NM_001164382, intron 11 of 13) intron (NM_001164382, intron 11 of 13) 113158 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 387-210 chr21 24910717 24911031 + 2 NA intron (NR_046198, intron 2 of 3) MLT2C1|LTR|ERVL 70324 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 460-98 chr16 73475504 73475949 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 88921 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 175-18 chr1 210213851 210213963 + 2 NA Intergenic HAL1|LINE|L1 -18889 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 582-3 chr1 103668344 103668763 + 2 NA Intergenic Intergenic 12850 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 380-99 chr12 72955793 72955998 + 2 NA Intergenic Intergenic -203295 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 537-247 chr8 59825104 59825485 + 2 NA Intergenic L1MC1|LINE|L1 456106 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 298-332 chr4 79416179 79416427 + 2 NA Intergenic Intergenic -8075 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 531-156 chr3 99566987 99567452 + 2 NA Intergenic Intergenic -71375 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 300-479 chr8 130670760 130670917 + 2 NA Intergenic AluSz6|SINE|Alu -227164 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 238-291 chr5 27252847 27253031 + 2 NA Intergenic Intergenic -214353 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 226-187 chr2 178158200 178158398 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -36182 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 537-38 chr11 33577405 33577792 + 2 NA intron (NM_012194, intron 10 of 20) L2c|LINE|L2 123142 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 535-250 chr8 135133165 135133543 + 2 NA Intergenic MIR|SINE|MIR -100777 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 361-234 chr2 141539931 141540137 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 591667 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 144-89 chr6 45183019 45183118 + 2 NA intron (NM_001350325, intron 2 of 10) L1MB4|LINE|L1 14702 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 350-127 chr14 33052092 33052286 + 2 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 113310 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 244-321 chr6 65099126 65099363 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -202174 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 212-227 chr3 186156694 186156880 + 2 NA intron (NM_001346, intron 24 of 24) L1MD|LINE|L1 -47698 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 302-75 chr11 61997516 61997705 + 2 NA Intergenic Intergenic -29976 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 491-136 chr2 193743483 193743844 + 2 NA Intergenic L1PA13|LINE|L1 -600606 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 267-51 chr10 67521141 67521345 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -117833 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 273-132 chr14 56970903 56971088 + 2 NA Intergenic L1M5|LINE|L1 157837 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 282-62 chr11 2641877 2642061 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 58029 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 228-77 chr12 99969681 99969857 + 2 NA intron (NM_152788, intron 1 of 25) intron (NM_152788, intron 1 of 25) 14885 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 342-188 chr17 33652762 33653029 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -119135 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 379-60 chr11 85851143 85851390 + 2 NA Intergenic Intergenic -3835 NM_001286159 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 505-107 chr16 63857236 63857625 + 2 NA Intergenic L1M3b|LINE|L1 1264633 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 205-132 chr2 15122660 15122768 + 2 NA Intergenic Intergenic 438620 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 408-15 chr1 87907969 87908233 + 2 NA Intergenic HAL1ME|LINE|L1 -536446 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 340-233 chr2 4008719 4009041 + 2 NA Intergenic L1MA4|LINE|L1 34719 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 358-464 chr8 43731348 43731594 + 2 NA Intergenic ALR/Alpha|Satellite|centr 439029 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 571-150 chr6 124559075 124559617 + 2 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 276341 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 201-255 chr9 25828847 25828999 + 2 NA Intergenic L1MA9|LINE|L1 48867 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 199-251 chr8 137213274 137213439 + 2 NA Intergenic Intergenic 200232 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 410-216 chr4 65286097 65286370 + 2 NA Intergenic Intergenic -281733 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 325-462 chr5 137001856 137002019 + 2 NA intron (NM_004598, intron 6 of 10) intron (NM_004598, intron 6 of 10) -126260 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 260-228 chr2 210245256 210245434 + 2 NA Intergenic L1ME3C|LINE|L1 -19898 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 276-42 chr10 10336025 10336253 + 2 NA Intergenic L1MEd|LINE|L1 126210 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 341-467 chr6 81504885 81505224 + 2 NA Intergenic L1M8|LINE|L1 247627 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 258-223 chr20 9316379 9316594 + 2 NA intron (NM_000933, intron 1 of 35) L2a|LINE|L2 8686 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 337-287 chr2 183707255 183707445 + 2 NA Intergenic Intergenic 582907 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 386-193 chr2 198823563 198823866 + 2 NA Intergenic L2|LINE|L2 -448617 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 380-227 chr21 31150395 31150622 + 2 NA intron (NM_001353684, intron 4 of 12) L1ME1|LINE|L1 10432 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 271-406 chr7 67137845 67138043 + 2 NA intron (NR_134540, intron 12 of 14) intron (NR_134540, intron 12 of 14) -23547 NR_039793 100616310 NR_039793 ENSG00000266525 MIR4650-1 - microRNA 4650-1 ncRNA 373-368 chr6 153881033 153881260 + 2 NA Intergenic L1M5|LINE|L1 -129350 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 370-314 chr3 102006052 102006356 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 65345 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 176-88 chr3 127729386 127729558 + 2 NA intron (NM_001003794, intron 3 of 7) L1MC5a|LINE|L1 56520 NM_172027 80325 Hs.107812 NM_032548 ENSG00000114626 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP|PP2259 ankyrin repeat and BTB domain containing 1 protein-coding 351-505 chr8 136129918 136130256 + 2 NA Intergenic Intergenic -400711 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 862-6 chr10 70262008 70262776 + 2 NA intron (NM_022146, intron 2 of 3) L1MC4a|LINE|L1 21612 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 603-99 chr20 37623368 37623864 + 2 NA promoter-TSS (NR_047461) promoter-TSS (NR_047461) -497 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 188-144 chr4 18331058 18331234 + 2 NA Intergenic L1ME3A|LINE|L1 -309271 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 348-216 chr2 14176378 14176630 + 2 NA Intergenic L1ME4a|LINE|L1 224454 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 349-312 chr22 32704623 32704885 + 2 NA intron (NM_003490, intron 6 of 13) L1PREC2|LINE|L1 -96062 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 252-462 chrX 81184696 81184847 + 2 NA intron (NM_030763, intron 1 of 6) L1MA3|LINE|L1 17142 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 351-67 chr11 37923289 37923567 + 2 NA Intergenic Intergenic -15173 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 360-28 chr10 17564922 17565207 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 52310 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 320-265 chr2 94181895 94182188 + 2 NA Intergenic ALR/Alpha|Satellite|centr 26378 NR_146108 728034 NR_146105 BMS1P14 - BMS1 pseudogene 14 pseudo 607-45 chr15 65214693 65215275 + 2 NA Intergenic Intergenic -3511 NM_003613 8483 Hs.442180 NM_003613 ENSG00000138615 CILP CILP-1|HsT18872 cartilage intermediate layer protein protein-coding 226-142 chr19 2867739 2867922 + 2 NA intron (NR_145838, intron 1 of 3) intron (NR_145838, intron 1 of 3) 495 NR_145838 80032 Hs.287433 NM_024967 ENSG00000172000 ZNF556 - zinc finger protein 556 protein-coding 219-30 chr10 32284588 32284791 + 2 NA intron (NM_001272004, intron 10 of 13) intron (NM_001272004, intron 10 of 13) 62469 NM_025209 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 314-43 chr1 217163683 217163910 + 2 NA Intergenic Intergenic -26094 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 546-47 chr12 11566564 11566952 + 2 NA Intergenic AluSx4|SINE|Alu 18728 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 320-289 chr2 188709433 188709629 + 2 NA Intergenic L1PA16|LINE|L1 80592 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 229-166 chr19 34803723 34803902 + 2 NA Intergenic Intergenic 29057 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 390-225 chr3 3929769 3930107 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -129063 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 566-138 chr4 20005055 20005562 + 2 NA Intergenic MER58D|DNA|hAT-Charlie -246597 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 464-213 chr6 61894016 61894324 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 320040 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 447-300 chrX 38948608 38948975 + 2 NA Intergenic L2c|LINE|L2 -144908 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 326-495 chr7 47767798 47767975 + 2 NA Intergenic L2a|LINE|L2 6410 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 278-115 chr14 60607894 60608136 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -31201 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 271-464 chr8 132088698 132088884 + 2 NA intron (NM_001145095, intron 7 of 15) MIR|SINE|MIR 16474 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 360-226 chr2 111628281 111628510 + 2 NA Intergenic L1MDa|LINE|L1 -133234 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 207-252 chr5 164722622 164722815 + 2 NA Intergenic Intergenic 252439 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 406-127 chr19 12559870 12560171 + 2 NA Intergenic Intergenic -8538 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 344-520 chr9 85384738 85384993 + 2 NA Intergenic Intergenic 357164 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 571-165 chr8 43837830 43838175 + 2 NA Intergenic ALR/Alpha|Satellite|centr 545560 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 205-48 chr11 12355629 12355789 + 2 NA intron (NM_032867, intron 8 of 8) MIRb|SINE|MIR -21862 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 383-207 chr2 185632475 185632778 + 2 NA Intergenic Intergenic 106093 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 463-165 chr20 45580302 45580679 + 2 NA Intergenic L1ME3B|LINE|L1 -1206 NM_130896 90199 Hs.116128 NM_130896 ENSG00000158901 WFDC8 C20orf170|HEL-S-292|WAP8|dJ461P17.1 WAP four-disulfide core domain 8 protein-coding 240-171 chr16 79979354 79979522 + 2 NA Intergenic Intergenic 184189 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 335-182 chr16 18045600 18045779 + 2 NA Intergenic Intergenic 286973 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 416-50 chr10 82981483 82981769 + 2 NA intron (NR_163253, intron 10 of 10) intron (NR_163253, intron 10 of 10) 695463 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 288-220 chr2 240229107 240229351 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -88571 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 409-142 chr2 57113575 57113924 + 2 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -793902 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 309-431 chr5 27317391 27317579 + 2 NA Intergenic Intergenic -154807 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 196-143 chr2 188289873 188290008 + 2 NA Intergenic Intergenic -1729 NM_001252669 51454 Hs.470887 NM_016315 ENSG00000144366 GULP1 CED-6|CED6|GULP GULP PTB domain containing engulfment adaptor 1 protein-coding 233-38 chr10 56347648 56347811 + 2 NA Intergenic Intergenic 13530 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 581-141 chr5 125706938 125707274 + 2 NA Intergenic HAL1ME|LINE|L1 213845 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 372-156 chr14 88071418 88071673 + 2 NA intron (NR_046094, intron 2 of 3) L1MC1|LINE|L1 -45233 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 139-51 chr22 39197343 39197475 + 2 NA Intergenic L1MD1|LINE|L1 43500 NM_033016 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 464-34 chr11 43158320 43158692 + 2 NA Intergenic SATR2|Satellite|Satellite 110863 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 239-191 chr2 142489481 142489661 + 2 NA Intergenic Intergenic -357870 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 361-125 chr13 35323693 35323992 + 2 NA intron (NM_015678, intron 36 of 57) intron (NM_015678, intron 36 of 57) 152847 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 222-224 chr22 47875505 47875686 + 2 NA Intergenic L1MEg|LINE|L1 243921 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 220-244 chr3 179109451 179109585 + 2 NA intron (NR_125401, intron 2 of 2) HAL1|LINE|L1 -37709 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 268-7 chr1 72132619 72132827 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 149816 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 247-352 chr6 36139516 36139740 + 2 NA non-coding (NR_072996, exon 10 of 10) non-coding (NR_072996, exon 10 of 10) 9115 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 184-61 chr14 85720899 85721049 + 2 NA Intergenic Intergenic 187625 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 405-186 chr20 59433118 59433414 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie 132655 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 361-165 chr17 11954315 11954608 + 2 NA intron (NM_001372, intron 67 of 68) L1MEf|LINE|L1 42911 NM_144680 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 231-370 chr8 139482816 139483041 + 2 NA Intergenic LTR50|LTR|ERVL 220195 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 502-93 chr14 81735314 81735677 + 2 NA intron (NR_146498, intron 2 of 2) Tigger16a|DNA|TcMar-Tigger 7643 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 434-290 chr8 112628643 112628961 + 2 NA intron (NM_001363185, intron 20 of 66) L2c|LINE|L2 -14691 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 450-147 chr2 126328582 126328937 + 2 NA Intergenic Intergenic -210774 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 217-87 chr12 61283921 61284091 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 908833 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 358-342 chr4 99741889 99742193 + 2 NA Intergenic Intergenic -74786 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 295-204 chr2 41815145 41815370 + 2 NA Intergenic Intergenic -62298 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 176-95 chr4 34415645 34415746 + 2 NA Intergenic L1MC|LINE|L1 -145948 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 312-435 chr5 143991760 143992052 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 178753 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 512-104 chr18 5219806 5220206 + 2 NA Intergenic Intergenic 18023 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 574-131 chr4 117660551 117660993 + 2 NA intron (NR_125757, intron 3 of 3) intron (NR_125757, intron 3 of 3) -173629 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 390-197 chr2 146514744 146515116 + 2 NA Intergenic Intergenic -72127 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 875-26 chr4 66995074 66995739 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 426594 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 546-218 chr7 41391212 41391593 + 2 NA Intergenic L1ME1|LINE|L1 289798 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 318-169 chr14 59934849 59935116 + 2 NA intron (NR_075071, intron 6 of 32) L1M5|LINE|L1 15269 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 608-150 chr7 86713860 86714199 + 2 NA intron (NM_001363522, intron 1 of 4) LTR16B2|LTR|ERVL 70115 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 407-152 chr2 145490871 145491212 + 2 NA Intergenic Intergenic 823074 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 186-133 chr5 131841877 131842034 + 2 NA intron (NM_001303622, intron 11 of 12) L1M1|LINE|L1 -44938 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 378-279 chr3 44377277 44377499 + 2 NA intron (NM_001282915, intron 5 of 10) L1MB3|LINE|L1 38622 NM_173826 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 394-339 chr9 38215152 38215398 + 2 NA Intergenic Intergenic -146048 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 342-319 chr3 75219668 75219936 + 2 NA Intergenic Intergenic 5326 NR_049831 100846999 NR_049831 ENSG00000266780 MIR4444-2 - microRNA 4444-2 ncRNA 212-45 chr10 67652399 67652547 + 2 NA intron (NM_001291133, intron 1 of 8) L3|LINE|CR1 13187 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 244-187 chr2 226377763 226377966 + 2 NA Intergenic Intergenic 235070 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 364-313 chr4 115806620 115806839 + 2 NA Intergenic Intergenic -492996 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 251-357 chr6 165870175 165870363 + 2 NA Intergenic L1MA4|LINE|L1 -117282 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 265-154 chr18 39220007 39220223 + 2 NA intron (NR_024391, intron 3 of 3) L2a|LINE|L2 402060 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 324-179 chr15 55392967 55393181 + 2 NA intron (NR_037923, intron 8 of 15) AluSq2|SINE|Alu 15285 NM_004748 9236 Hs.285051 NM_004748 ENSG00000260916 CCPG1 CPR8 cell cycle progression 1 protein-coding 245-355 chr8 123075904 123076094 + 2 NA intron (NM_001363149, intron 1 of 21) intron (NM_001363149, intron 1 of 21) 2750 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 484-274 chr8 130878654 130879130 + 2 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 162017 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 379-222 chr3 135540108 135540428 + 2 NA Intergenic MIRb|SINE|MIR -425460 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 293-264 chr3 77487729 77487963 + 2 NA intron (NM_001290039, intron 4 of 26) intron (NM_001290039, intron 4 of 26) 389834 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 282-361 chr5 10360351 10360537 + 2 NA intron (NM_001270661, intron 1 of 22) Tigger2b_Pri|DNA|TcMar-Tigger 6749 NM_005885 10299 Hs.432862 NM_005885 ENSG00000145495 MARCH6 DOA10|MARCH-VI|RNF176|TEB4 membrane associated ring-CH-type finger 6 protein-coding 298-351 chr5 5835032 5835201 + 2 NA Intergenic Intergenic 412439 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 515-110 chr2 51876304 51876680 + 2 NA intron (NR_135237, intron 7 of 10) L1MA2|LINE|L1 -494156 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 562-30 chr11 14340665 14341063 + 2 NA intron (NM_001177314, intron 1 of 5) intron (NM_001177314, intron 1 of 5) 17621 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 403-78 chr12 59877761 59878076 + 2 NA Intergenic Intergenic 188548 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 318-167 chr14 53505457 53505648 + 2 NA Intergenic Intergenic 352198 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 247-351 chr6 19492786 19492975 + 2 NA Intergenic MER95|LTR|ERV1 43059 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 226-44 chr10 77368061 77368209 + 2 NA intron (NR_126365, intron 3 of 5) L1ME1|LINE|L1 17263 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 335-30 chr1 213882692 213882983 + 2 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -41912 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 348-148 chr14 82944905 82945195 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 302418 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 368-43 chr10 23583986 23584267 + 2 NA Intergenic Intergenic -110601 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 330-12 chr1 50769019 50769296 + 2 NA intron (NM_007051, intron 4 of 18) L1PA15|LINE|L1 191110 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 254-218 chr20 6621106 6621250 + 2 NA Intergenic Intergenic 114958 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 218-62 chr11 125815001 125815153 + 2 NA Intergenic L1MA2|LINE|L1 -18239 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 352-296 chr21 29588861 29589192 + 2 NA exon (NM_001330994, exon 11 of 18) exon (NM_001330994, exon 11 of 18) -7014 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 320-124 chr12 88782479 88782705 + 2 NA Intergenic Intergenic -202119 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 338-511 chr7 89061980 89062274 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -266390 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 364-379 chr6 46589308 46589624 + 2 NA intron (NM_016593, intron 8 of 11) AluJo|SINE|Alu 63352 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 286-25 chr1 201336212 201336412 + 2 NA Intergenic MIRb|SINE|MIR 41368 NM_001001430 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 769-45 chr4 79143722 79144291 + 2 NA intron (NR_038342, intron 3 of 5) Tigger1|DNA|TcMar-Tigger 172258 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 447-5 chr1 85353156 85353523 + 2 NA intron (NM_001134445, intron 3 of 6) intron (NM_001134445, intron 3 of 6) 51167 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 455-173 chr3 149310079 149310490 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 23154 NM_001184723 116441 Hs.22026 NM_138786 ENSG00000163762 TM4SF18 L6D transmembrane 4 L six family member 18 protein-coding 347-81 chr11 103654990 103655255 + 2 NA Intergenic Intergenic -194784 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 206-111 chr2 48912504 48912680 + 2 NA Intergenic Intergenic -147011 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 472-260 chr5 165090660 165091070 + 2 NA Intergenic Intergenic 620586 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 251-323 chr5 170937449 170937670 + 2 NA intron (NM_022897, intron 12 of 27) MER91A|DNA|hAT-Tip100 75541 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 137-3 chr1 103846498 103846579 + 2 NA Intergenic L1M4|LINE|L1 96697 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 294-179 chr18 54534660 54534839 + 2 NA Intergenic Intergenic -53010 NM_001307955 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 282-451 chr8 87733185 87733404 + 2 NA Intergenic L1MC3|LINE|L1 140721 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 304-279 chr2 163811624 163811819 + 2 NA Intergenic L3|LINE|CR1 -75713 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 138-11 chr11 39805353 39805436 + 2 NA Intergenic Intergenic 487736 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 269-15 chr1 110248096 110248245 + 2 NA 3' UTR (NM_004978, exon 4 of 4) 3' UTR (NM_004978, exon 4 of 4) 37856 NM_004978 3749 Hs.153521 NM_004978 ENSG00000116396 KCNC4 C1orf30|HKSHIIIC|KSHIIIC|KV3.4 potassium voltage-gated channel subfamily C member 4 protein-coding 325-557 chr8 132980166 132980476 + 2 NA intron (NM_003235, intron 34 of 47) MER21C|LTR|ERVL 66260 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 335-199 chr17 52555363 52555632 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 164975 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 327-342 chr3 137222617 137222910 + 2 NA Intergenic UCON34|Unknown|Unknown 264780 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 250-204 chr2 57678772 57678947 + 2 NA Intergenic Intergenic -228792 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 424-41 chr11 62283025 62283319 + 2 NA Intergenic MER4-int|LTR|ERV1 13014 NM_002411 4250 Hs.46452 NM_002411 ENSG00000110484 SCGB2A2 MGB1|UGB2 secretoglobin family 2A member 2 protein-coding 252-442 chr8 137612168 137612356 + 2 NA Intergenic Intergenic -198674 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 356-314 chr3 5689206 5689455 + 2 NA Intergenic Intergenic -439075 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 306-173 chr15 91424221 91424511 + 2 NA Intergenic Intergenic -38973 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 195-34 chr11 20564197 20564325 + 2 NA Intergenic Intergenic -35139 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 449-287 chr8 130617272 130617580 + 2 NA Intergenic L1PA13|LINE|L1 -173752 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 237-219 chr21 35368421 35368589 + 2 NA Intergenic Intergenic 212259 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 368-330 chr4 62160758 62161083 + 2 NA intron (NR_110595, intron 1 of 7) LTR78|LTR|ERV1 845 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 543-84 chr15 100455004 100455479 + 2 NA intron (NM_001290341, intron 13 of 13) L1MA4A|LINE|L1 82302 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 256-137 chr15 61370272 61370481 + 2 NA Intergenic MLT2F|LTR|ERVL -141074 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 327-102 chr11 129249172 129249460 + 2 NA intron (NR_145484, intron 1 of 1) (TA)n|Simple_repeat|Simple_repeat 33848 NR_145484 399975 NM_207431 LOC399975 - uncharacterized LOC399975 ncRNA 352-276 chr20 9402193 9402500 + 2 NA intron (NM_000933, intron 17 of 35) L2b|LINE|L2 94546 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 258-124 chr14 55940584 55940796 + 2 NA Intergenic Intergenic -144016 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 262-368 chr6 53407792 53407989 + 2 NA Intergenic L2c|LINE|L2 -58711 NM_001242831 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 473-210 chr5 26467276 26467565 + 2 NA Intergenic Intergenic 571166 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 194-163 chr5 25977875 25978038 + 2 NA Intergenic Intergenic 787003 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 497-25 chr10 85507955 85508393 + 2 NA Intergenic Intergenic 58582 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 325-326 chr22 30140901 30141135 + 2 NA intron (NM_001329457, intron 11 of 11) AluSz|SINE|Alu 60554 NM_001329457 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 467-180 chr3 79468676 79469039 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -39030 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 240-190 chr18 34583070 34583234 + 2 NA intron (NM_001198945, intron 1 of 10) intron (NM_001198945, intron 1 of 10) -10183 NM_001128175 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 311-114 chr13 28957825 28958053 + 2 NA intron (NM_001366651, intron 2 of 14) intron (NM_001366651, intron 2 of 14) -66518 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 221-87 chr14 68035191 68035332 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 211669 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 190-73 chr18 1816928 1817080 + 2 NA Intergenic L1MB8|LINE|L1 -457375 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 318-272 chr2 78340770 78341007 + 2 NA Intergenic L1M8|LINE|L1 -50157 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 432-260 chr7 3575388 3575654 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 274269 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 164-87 chr4 74674600 74674709 + 2 NA Intergenic LTR78|LTR|ERV1 119869 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 317-401 chr5 156141687 156141932 + 2 NA Intergenic HAL1ME|LINE|L1 -184948 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 189-99 chr2 184831116 184831299 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 232678 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 335-523 chr8 19328381 19328644 + 2 NA intron (NR_156444, intron 2 of 8) intron (NR_156444, intron 2 of 8) 14536 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 390-325 chr6 78088936 78089184 + 2 NA Intergenic Intergenic 436021 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 189-206 chr8 84075425 84075579 + 2 NA Intergenic L1PA16|LINE|L1 -107285 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 268-60 chr10 123977477 123977650 + 2 NA Intergenic L1MEg|LINE|L1 -85756 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 395-190 chr2 207344618 207344919 + 2 NA Intergenic L1PA7|LINE|L1 -75344 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 339-373 chr3 97037279 97037576 + 2 NA intron (NM_001080448, intron 3 of 17) L2c|LINE|L2 222833 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 298-455 chr8 54287228 54287486 + 2 NA Intergenic L1MB3|LINE|L1 -43329 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 294-346 chr4 114596397 114596596 + 2 NA Intergenic Intergenic -1906 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 284-59 chr10 108532272 108532518 + 2 NA Intergenic L1ME3Cz|LINE|L1 -463102 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 389-298 chr5 130727779 130728142 + 2 NA Intergenic MER67C|LTR|ERV1 437296 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 446-92 chr13 42562266 42562697 + 2 NA promoter-TSS (NM_033012) promoter-TSS (NM_033012) -255 NM_033012 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 215-315 chr8 99555383 99555595 + 2 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) -18628 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 229-202 chr2 151016541 151016738 + 2 NA Intergenic MIR3|SINE|MIR 245224 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 281-433 chr8 93182865 93183064 + 2 NA Intergenic Intergenic -16114 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 444-213 chr5 180075899 180076246 + 2 NA Intergenic L1ME3|LINE|L1 -4313 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 424-275 chr8 82908846 82909245 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -3059 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 129-9 chr11 99820447 99820536 + 2 NA intron (NM_001243270, intron 3 of 23) intron (NM_001243270, intron 3 of 23) 264346 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 580-176 chr7 9930799 9931213 + 2 NA Intergenic L1MB8|LINE|L1 296736 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 196-129 chr2 95502717 95502860 + 2 NA Intergenic Intergenic -18057 NM_001164464 653192 Hs.723811 NM_001164464 ENSG00000144010 TRIM43B - tripartite motif containing 43B protein-coding 254-24 chr1 220573831 220574033 + 2 NA intron (NM_018650, intron 1 of 17) L1MEf|LINE|L1 45749 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 357-92 chr12 129589774 129590082 + 2 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 314097 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 229-152 chr17 75147884 75148070 + 2 NA intron (NM_001002033, intron 3 of 5) AluSx|SINE|Alu 5316 NM_001288610 51155 Hs.532803 NM_016185 ENSG00000189159 JPT1 ARM2|HN1|HN1A Jupiter microtubule associated homolog 1 protein-coding 325-208 chr16 83216659 83216975 + 2 NA intron (NM_001220490, intron 3 of 12) (TA)n|Simple_repeat|Simple_repeat -226519 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 327-163 chr15 26272261 26272439 + 2 NA Intergenic Intergenic 156537 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 299-458 chr8 102801347 102801556 + 2 NA Intergenic L1MA3|LINE|L1 -5371 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 233-252 chr4 30546585 30546807 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -173673 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 395-92 chr14 56975434 56975738 + 2 NA Intergenic AluJo|SINE|Alu 162428 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 206-100 chr19 34528385 34528538 + 2 NA Intergenic L1M2|LINE|L1 16925 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 361-34 chr10 22118689 22118989 + 2 NA Intergenic Intergenic 91144 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 442-314 chr9 68517686 68518035 + 2 NA intron (NM_021965, intron 10 of 10) intron (NM_021965, intron 10 of 10) 23007 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 333-429 chr5 9476746 9477002 + 2 NA intron (NM_003966, intron 1 of 22) FLAM_C|SINE|Alu -34459 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 316-258 chr2 39359534 39359848 + 2 NA intron (NM_003618, intron 2 of 33) THE1C-int|LTR|ERVL-MaLR 77594 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 310-42 chr10 56572581 56572751 + 2 NA Intergenic Intergenic -211393 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 419-280 chr7 107162516 107162887 + 2 NA TTS (NM_002736) TTS (NM_002736) -6260 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 243-204 chr2 50070899 50071102 + 2 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -96797 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 462-38 chr10 131480022 131480423 + 2 NA Intergenic Intergenic -168501 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 946-18 chr4 89443613 89444415 + 2 NA Intergenic Intergenic -136214 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 343-275 chr2 147190512 147190775 + 2 NA Intergenic L1MB2|LINE|L1 603586 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 347-495 chr8 52380313 52380555 + 2 NA intron (NR_148195, intron 2 of 3) Tigger2b_Pri|DNA|TcMar-Tigger 29322 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 167-57 chr2 101074389 101074531 + 2 NA intron (NM_001102426, intron 2 of 19) Tigger1|DNA|TcMar-Tigger 72171 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 440-159 chr3 39717168 39717569 + 2 NA Intergenic Intergenic -91546 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 585-151 chr7 42984595 42985058 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 52450 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 330-452 chr5 175629925 175630134 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -28042 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 266-324 chr5 42454097 42454285 + 2 NA intron (NM_001242401, intron 1 of 10) L1PBa|LINE|L1 29210 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 613-6 chr1 76028134 76028600 + 2 NA Intergenic L1M3f|LINE|L1 17043 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 486-110 chr17 20194057 20194503 + 2 NA intron (NM_001033554, intron 1 of 5) MER41-int|LTR|ERV1 38208 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 289-120 chr12 118824902 118825093 + 2 NA intron (NR_134997, intron 2 of 2) MLT1A0|LTR|ERVL-MaLR 8539 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 569-69 chr17 47771272 47771681 + 2 NA Intergenic Intergenic 38240 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 660-57 chr21 23604624 23605126 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -220040 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 461-193 chr4 63329338 63329658 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1079952 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 336-217 chr17 73680390 73680614 + 2 NA Intergenic L1ME2|LINE|L1 -36057 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 488-73 chr14 40017928 40018378 + 2 NA Intergenic Intergenic -585653 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 569-147 chr5 88698752 88699280 + 2 NA intron (NR_146284, intron 1 of 3) intron (NR_146284, intron 1 of 3) -7975 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 286-443 chr8 50499622 50499903 + 2 NA intron (NR_135797, intron 8 of 20) L1ME1|LINE|L1 335631 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 260-194 chr19 49375493 49375689 + 2 NA TTS (NM_001197302) TTS (NM_001197302) 11714 NM_014419 27120 Hs.515855 NM_014419 ENSG00000104901 DKKL1 CT34|SGY|SGY-1|SGY1 dickkopf like acrosomal protein 1 protein-coding 307-516 chr9 76291201 76291386 + 2 NA intron (NM_001190482, intron 24 of 36) intron (NM_001190482, intron 24 of 36) 103133 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 490-142 chr2 60066036 60066418 + 2 NA Intergenic MIRb|SINE|MIR 316809 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 502-283 chr8 137226103 137226494 + 2 NA Intergenic Intergenic 187290 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 642-93 chr5 68333772 68334393 + 2 NA Intergenic Intergenic 41505 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 434-57 chr12 7428014 7428358 + 2 NA intron (NM_001297650, intron 4 of 19) intron (NM_001297650, intron 4 of 19) 15999 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 780-11 chr11 127783993 127784492 + 2 NA Intergenic HAL1|LINE|L1 -424524 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 422-109 chr16 74104069 74104481 + 2 NA Intergenic MER57B1|LTR|ERV1 111246 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 375-349 chr6 42063135 42063431 + 2 NA intron (NM_138572, intron 5 of 8) AluJb|SINE|Alu 12759 NM_138572 129685 Hs.520122 NM_138572 ENSG00000137413 TAF8 II|TAF|TAF(II)43|TAFII-43|TAFII43|TBN TATA-box binding protein associated factor 8 protein-coding 261-366 chr8 4333583 4333790 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 661228 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 414-354 chr9 85740095 85740454 + 2 NA intron (NM_015239, intron 1 of 25) intron (NM_015239, intron 1 of 25) 1755 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 312-18 chr1 118127556 118127761 + 2 NA intron (NM_206996, intron 3 of 48) L1MA5|LINE|L1 57570 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 683-27 chr17 51789919 51790407 + 2 NA intron (NM_001082533, intron 4 of 9) MamRep1527|LTR|LTR 354736 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 125-56 chr5 152057849 152057914 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 98983 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 250-60 chr10 124347895 124348074 + 2 NA Intergenic Intergenic 70939 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 278-59 chr11 112435679 112435893 + 2 NA Intergenic L1M4|LINE|L1 -46446 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 207-297 chr8 112633845 112634001 + 2 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -9570 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 210-82 chr14 89647302 89647450 + 2 NA Intergenic MER33|DNA|hAT-Charlie -28211 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 115-38 chr5 127230527 127230604 + 2 NA Intergenic Intergenic -60199 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 328-570 chr8 98901762 98902006 + 2 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 40726 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 288-96 chr13 52929714 52929916 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger -81175 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 379-213 chr3 58824796 58825109 + 2 NA intron (NR_110820, intron 1 of 2) FLAM_A|SINE|Alu 481 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 352-533 chr8 91000536 91000858 + 2 NA intron (NM_018710, intron 5 of 6) L1MEd|LINE|L1 -15459 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 373-80 chr11 78738552 78738833 + 2 NA intron (NM_001098816, intron 19 of 33) intron (NM_001098816, intron 19 of 33) -163828 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 644-95 chr7 48352256 48352861 + 2 NA intron (NM_152701, intron 31 of 61) intron (NM_152701, intron 31 of 61) 181100 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 306-497 chr8 50798926 50799087 + 2 NA Intergenic Intergenic 634875 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 393-349 chr8 59757873 59758112 + 2 NA Intergenic Intergenic 523408 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 215-155 chr2 129224463 129224620 + 2 NA Intergenic Intergenic 49350 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 234-380 chr8 27416594 27416777 + 2 NA intron (NM_173175, intron 2 of 29) L1ME2z|LINE|L1 -16685 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 208-117 chr2 56253574 56253740 + 2 NA intron (NM_001348516, intron 2 of 2) L2c|LINE|L2 -67887 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 305-80 chr10 109013620 109013782 + 2 NA Intergenic Intergenic 909545 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 222-66 chr11 75744363 75744558 + 2 NA Intergenic Intergenic 24187 NR_046090 283214 Hs.591972 NR_046090 ENSG00000247867 LOC283214 - uncharacterized LOC283214 ncRNA 248-120 chr14 78774166 78774328 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 370528 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 184-71 chr17 34544799 34544968 + 2 NA Intergenic Intergenic 34486 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 357-465 chr8 135296743 135297014 + 2 NA intron (NR_120396, intron 4 of 4) L1ME2|LINE|L1 62747 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 387-355 chr8 38141560 38141870 + 2 NA TTS (NM_000349) TTS (NM_000349) 9237 NM_000349 6770 Hs.521535 NM_000349 ENSG00000147465 STAR STARD1 steroidogenic acute regulatory protein protein-coding 338-86 chr10 116118271 116118513 + 2 NA intron (NM_145793, intron 4 of 8) intron (NM_145793, intron 4 of 8) 76397 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 201-30 chr10 69267892 69268055 + 2 NA TTS (NM_025130) TTS (NM_025130) -2027 NM_033498 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 467-94 chr15 86417854 86418275 + 2 NA intron (NM_152336, intron 18 of 24) L3|LINE|CR1 -101096 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 472-213 chr3 143114385 143114735 + 2 NA Intergenic Intergenic -5211 NM_004267 9435 Hs.8786 NM_004267 ENSG00000175040 CHST2 C6ST|GST-2|GST2|Gn6ST-1|HEL-S-75|glcNAc6ST-1 carbohydrate sulfotransferase 2 protein-coding 332-53 chr10 30933552 30933739 + 2 NA intron (NM_001143771, intron 2 of 7) AluJo|SINE|Alu 65872 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 203-247 chr9 32964558 32964741 + 2 NA Intergenic L1MC|LINE|L1 36927 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 293-375 chr6 90484614 90484790 + 2 NA Intergenic L2b|LINE|L2 102370 NM_145331 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 335-280 chr2 206948796 206949103 + 2 NA intron (NM_173077, intron 1 of 8) L1MC1|LINE|L1 9431 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 331-535 chr8 101775217 101775386 + 2 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 15668 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 729-20 chr13 22976177 22976616 + 2 NA Intergenic L1MC3|LINE|L1 -60027 NR_138043 100996930 Hs.380803 NR_138043 LINC00621 - long intergenic non-protein coding RNA 621 ncRNA 702-3 chr1 66142853 66143439 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -92428 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 266-141 chr16 74203000 74203210 + 2 NA intron (NR_104657, intron 3 of 3) intron (NR_104657, intron 3 of 3) 12416 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 286-380 chr6 27163165 27163391 + 2 NA Intergenic Intergenic 15652 NR_036096 100422934 NR_036096 ENSG00000265565 MIR3143 mir-3143 microRNA 3143 ncRNA 207-177 chr22 34452362 34452483 + 2 NA Intergenic Intergenic -529534 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 203-46 chr12 98282399 98282529 + 2 NA Intergenic Intergenic 174681 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 707-89 chr6 45763962 45764380 + 2 NA Intergenic L1MEc|LINE|L1 173426 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 201-239 chr8 87498465 87498616 + 2 NA Intergenic Intergenic 375475 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 222-130 chr16 47797898 47798073 + 2 NA Intergenic L1MA9|LINE|L1 -60596 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 384-73 chr12 23372102 23372298 + 2 NA Intergenic Intergenic 196564 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 311-475 chr7 68387961 68388132 + 2 NA Intergenic Intergenic 367793 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 459-57 chr11 124582183 124582606 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR 12397 NM_001005194 390275 Hs.632104 NM_001005194 ENSG00000196119 OR8A1 OR11-318|OST025 olfactory receptor family 8 subfamily A member 1 protein-coding 211-205 chr4 35537769 35537943 + 2 NA Intergenic Intergenic 706083 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 256-388 chr7 52248771 52248938 + 2 NA Intergenic Intergenic -786779 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 420-30 chr10 16613781 16614161 + 2 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -92092 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 452-41 chr11 34551038 34551414 + 2 NA Intergenic L1MDa|LINE|L1 -37432 NM_001422 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 517-178 chr3 109944876 109945215 + 2 NA Intergenic Intergenic 342217 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 163-4 chr1 100546124 100546264 + 2 NA Intergenic Intergenic 8055 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 335-258 chr2 117589499 117589803 + 2 NA Intergenic L1PB1|LINE|L1 -225040 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 242-24 chr1 194445716 194445889 + 2 NA Intergenic L1MB7|LINE|L1 1141057 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 195-233 chr7 125321658 125321810 + 2 NA intron (NR_110188, intron 3 of 8) L1ME4a|LINE|L1 -57443 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 511-205 chr5 32698608 32698985 + 2 NA intron (NM_001364458, intron 1 of 7) L1MA3|LINE|L1 7924 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 210-197 chr4 64255739 64255885 + 2 NA Intergenic MIRb|SINE|MIR 153638 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 274-138 chr15 27787228 27787398 + 2 NA intron (NM_001300984, intron 22 of 22) L1M4a2|LINE|L1 312002 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 216-354 chrX 34720545 34720744 + 2 NA Intergenic Intergenic -63359 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 295-254 chr20 37629368 37629637 + 2 NA Intergenic LTR16A1|LTR|ERVL -6383 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 262-276 chr3 65594714 65594870 + 2 NA intron (NM_001365904, intron 2 of 24) intron (NM_001365904, intron 2 of 24) -299024 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 388-371 chr9 93833633 93833984 + 2 NA Intergenic L1ME2|LINE|L1 14451 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 249-70 chr11 29487954 29488123 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -106375 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 353-17 chr1 77566021 77566282 + 2 NA exon (NM_001308237, exon 13 of 14) exon (NM_001308237, exon 13 of 14) 116507 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 391-377 chr9 29119168 29119500 + 2 NA intron (NM_001354574, intron 1 of 5) L1M3|LINE|L1 92965 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 525-276 chr9 26028173 26028519 + 2 NA Intergenic Intergenic -38329 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 315-420 chr6 67643936 67644127 + 2 NA Intergenic Intergenic -411320 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 336-83 chr11 13501590 13501806 + 2 NA Intergenic Intergenic -5523 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 570-137 chr3 86896287 86896699 + 2 NA Intergenic L2c|LINE|L2 94656 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 159-76 chr5 91823514 91823658 + 2 NA Intergenic Intergenic -440269 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 347-71 chr11 38538645 38538897 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 107585 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 513-57 chr12 33155345 33155679 + 2 NA Intergenic Intergenic -258666 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 291-473 chr8 130941994 130942251 + 2 NA intron (NM_001115, intron 4 of 17) L1ME1|LINE|L1 98787 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 203-198 chr6 44843997 44844191 + 2 NA intron (NM_181356, intron 12 of 12) L1ME1|LINE|L1 -292213 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 375-291 chr4 80135775 80136066 + 2 NA Intergenic Intergenic -49350 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 459-22 chr1 231993098 231993445 + 2 NA intron (NM_001164538, intron 10 of 10) intron (NM_001164538, intron 10 of 10) 67437 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 372-411 chr5 119906876 119907126 + 2 NA Intergenic LTR54B|LTR|ERV1 277442 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 311-178 chr16 52319990 52320155 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 61508 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 264-181 chr18 75955648 75955906 + 2 NA Intergenic L1M3|LINE|L1 -167221 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 181-170 chr9 22627750 22627862 + 2 NA Intergenic L1ME1|LINE|L1 -18394 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 345-377 chr4 31896893 31897222 + 2 NA Intergenic L1MEi|LINE|L1 -100322 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 320-253 chr2 24504742 24504979 + 2 NA intron (NM_001362952, intron 1 of 23) L4_A_Mam|LINE|RTE-X 12983 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 365-88 chr12 9328893 9329134 + 2 NA Intergenic Intergenic -38451 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 400-367 chr9 85033090 85033367 + 2 NA Intergenic L1MEd|LINE|L1 327327 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 213-257 chr6 166703912 166704082 + 2 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -76746 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 318-446 chr5 66292475 66292640 + 2 NA Intergenic Intergenic -83111 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 125-12 chr12 39380892 39380992 + 2 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 62178 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 227-138 chr17 71129788 71129978 + 2 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 72296 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 279-66 chr11 37620912 37621161 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -317565 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 325-439 chr5 45244988 45245193 + 2 NA Intergenic L1PA13|LINE|L1 436143 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 191-97 chr2 67942415 67942537 + 2 NA Intergenic Intergenic -116914 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 289-206 chr2 6023810 6024027 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 41940 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 444-113 chr19 30400419 30400764 + 2 NA intron (NM_014717, intron 1 of 4) AluJr|SINE|Alu 28207 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 513-255 chr6 169584981 169585339 + 2 NA intron (NM_182552, intron 23 of 25) L1MA9|LINE|L1 116869 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 322-385 chr4 103416380 103416661 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -8522 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 293-201 chr2 122951519 122951741 + 2 NA Intergenic L1PA13|LINE|L1 121851 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 559-177 chr8 4594383 4594748 + 2 NA intron (NM_033225, intron 2 of 69) MLT1C|LTR|ERVL-MaLR 400349 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 286-359 chr5 64100038 64100245 + 2 NA Intergenic Intergenic -65702 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 341-115 chr12 52642193 52642477 + 2 NA Intergenic Intergenic 9876 NM_000423 3849 Hs.707 NM_000423 ENSG00000172867 KRT2 CK-2e|K2e|KRT2A|KRT2E|KRTE keratin 2 protein-coding 542-235 chr9 31434999 31435361 + 2 NA Intergenic L1MCb|LINE|L1 -53690 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 258-89 chr12 44462450 44462703 + 2 NA Intergenic L1MEj|LINE|L1 413085 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 252-210 chr2 132412181 132412381 + 2 NA Intergenic Intergenic -4524 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 188-58 chr15 26862742 26862853 + 2 NA Intergenic L1PB3|LINE|L1 -4265 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 376-313 chr5 23831876 23832213 + 2 NA Intergenic L1PA13|LINE|L1 -119304 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 250-254 chr21 30711204 30711441 + 2 NA Intergenic Intergenic 7455 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 184-52 chr13 59491959 59492078 + 2 NA Intergenic Intergenic -520700 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 336-586 chr9 103501574 103501854 + 2 NA Intergenic Intergenic -176681 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 268-69 chr11 82312526 82312756 + 2 NA intron (NR_120571, intron 3 of 7) L2|LINE|L2 91272 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 374-199 chr2 125731353 125731592 + 2 NA Intergenic Intergenic 386513 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 266-23 chr1 194615610 194615834 + 2 NA Intergenic Intergenic 1310977 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 319-260 chr2 136733914 136734175 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -31501 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 481-60 chr12 1408361 1408755 + 2 NA intron (NM_001301248, intron 16 of 18) intron (NM_001301248, intron 16 of 18) -91933 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 342-41 chr1 202714160 202714457 + 2 NA Intergenic AluSq|SINE|Alu -3854 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 364-11 chr1 74134513 74134822 + 2 NA intron (NM_001105659, intron 4 of 7) L1M4a2|LINE|L1 63509 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 269-155 chr17 59469986 59470231 + 2 NA intron (NR_110813, intron 2 of 2) intron (NR_110813, intron 2 of 2) 56749 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 437-81 chr14 78411975 78412319 + 2 NA intron (NM_004796, intron 1 of 16) MLT1I|LTR|ERVL-MaLR 8428 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 340-344 chr22 48758154 48758475 + 2 NA Intergenic Intergenic -21981 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 462-64 chr12 94500940 94501262 + 2 NA Intergenic MER77|LTR|ERVL -40647 NM_001368038 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 360-45 chr10 80937174 80937403 + 2 NA Intergenic HAL1ME|LINE|L1 287491 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 247-125 chr15 47680857 47681020 + 2 NA intron (NM_001198999, intron 4 of 19) L1MB1|LINE|L1 -36567 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 428-297 chr8 78894599 78894864 + 2 NA Intergenic Intergenic 57202 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 258-80 chr12 23041840 23042022 + 2 NA Intergenic Intergenic -133705 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 227-357 chr7 94323339 94323518 + 2 NA Intergenic Intergenic 68764 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 338-107 chr11 84428941 84429130 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -111696 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 211-13 chr1 170712081 170712256 + 2 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 48037 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 244-31 chr10 43240834 43240991 + 2 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -11173 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 333-344 chr3 34989961 34990160 + 2 NA intron (NR_110817, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 403963 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 315-358 chr4 168496299 168496548 + 2 NA promoter-TSS (NM_016081) promoter-TSS (NM_016081) -629 NM_001166108 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 333-116 chr12 59832582 59832886 + 2 NA Intergenic Intergenic 143364 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 398-387 chr9 120424018 120424271 + 2 NA intron (NR_073558, intron 25 of 37) MIRb|SINE|MIR 156023 NR_073555 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 209-301 chr7 80926912 80927080 + 2 NA Intergenic LTR12|LTR|ERV1 -4607 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 318-348 chr3 28207091 28207342 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -34403 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 237-71 chr12 33925526 33925694 + 2 NA Intergenic Intergenic -96886 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 145-42 chr18 68481627 68481726 + 2 NA Intergenic L1MEd|LINE|L1 233432 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 475-31 chr10 101857984 101858381 + 2 NA intron (NM_024541, intron 24 of 25) intron (NM_024541, intron 24 of 25) -14262 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 208-93 chr17 70667712 70667837 + 2 NA Intergenic L2a|LINE|L2 498239 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 144-23 chr13 111957253 111957344 + 2 NA Intergenic Intergenic -15012 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 138-65 chr5 26629036 26629136 + 2 NA Intergenic Intergenic 409500 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 381-353 chr7 50247730 50247941 + 2 NA Intergenic L1MB3|LINE|L1 -56229 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 367-243 chr20 2562967 2563176 + 2 NA intron (NM_080751, intron 4 of 19) intron (NM_080751, intron 4 of 19) 26464 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 450-240 chr5 54280748 54281137 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 29631 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 462-239 chr5 156959884 156960147 + 2 NA intron (NM_138379, intron 1 of 8) AluSx1|SINE|Alu 3211 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 348-326 chr3 151912609 151912934 + 2 NA intron (NR_110203, intron 1 of 2) AluSx4|SINE|Alu 15404 NR_110203 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 278-124 chr14 101244710 101244911 + 2 NA Intergenic L1MD2|LINE|L1 123954 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 328-505 chr6 82646121 82646399 + 2 NA Intergenic Intergenic 282016 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 358-424 chr7 9536630 9536826 + 2 NA Intergenic L1PA16|LINE|L1 -97542 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 296-302 chr3 106458722 106458990 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -589455 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 207-200 chr3 122342338 122342478 + 2 NA TTS (NM_005213) TTS (NM_005213) 17160 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 792-52 chr6 45137973 45138544 + 2 NA intron (NM_001350325, intron 2 of 10) L1MB7|LINE|L1 59512 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 270-76 chr12 23527823 23528079 + 2 NA Intergenic Intergenic 56635 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 796-52 chr7 32103090 32103714 + 2 NA intron (NM_001322059, intron 3 of 17) HAL1|LINE|L1 -31966 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 344-446 chr7 4401041 4401221 + 2 NA Intergenic MER77|LTR|ERVL -266294 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 354-202 chr2 14656442 14656698 + 2 NA Intergenic Intergenic 23853 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 234-5 chr1 51774465 51774648 + 2 NA intron (NM_148906, intron 13 of 22) MIRc|SINE|MIR 44706 NM_148907 114883 Hs.21938 NM_024586 ENSG00000117859 OSBPL9 ORP-9|ORP9 oxysterol binding protein like 9 protein-coding 238-123 chr15 96848043 96848260 + 2 NA Intergenic L1MA3|LINE|L1 64716 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 241-327 chr6 41517357 41517529 + 2 NA intron (NR_120347, intron 2 of 2) intron (NR_120347, intron 2 of 2) 14999 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 297-90 chr11 114153782 114153975 + 2 NA intron (NM_006006, intron 2 of 6) MIR3|SINE|MIR 90667 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 468-35 chr10 89919377 89919780 + 2 NA intron (NR_110655, intron 3 of 3) intron (NR_110655, intron 3 of 3) 31444 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 647-90 chr7 7092661 7093284 + 2 NA non-coding (NR_034022, exon 1 of 1) non-coding (NR_034022, exon 1 of 1) 3814 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 646-70 chr20 40173596 40174076 + 2 NA Intergenic Intergenic 169375 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 627-13 chr10 107926722 107927233 + 2 NA intron (NR_125760, intron 4 of 4) L1M4|LINE|L1 142316 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 379-196 chr20 60948308 60948525 + 2 NA Intergenic Intergenic -130648 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 351-213 chr2 53111164 53111507 + 2 NA Intergenic Intergenic -408720 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 255-110 chr14 63078543 63078692 + 2 NA Intergenic Intergenic -33159 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 439-24 chr10 23379976 23380337 + 2 NA Intergenic Intergenic -35359 NM_001351306 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552 chromosome 10 open reading frame 67 protein-coding 386-309 chr6 48987767 48988089 + 2 NA Intergenic L1PB1|LINE|L1 475325 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 211-249 chr5 166322022 166322177 + 2 NA Intergenic Intergenic 604271 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 259-348 chr6 92135962 92136185 + 2 NA Intergenic MIR|SINE|MIR -445645 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 263-329 chr5 84542280 84542455 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -157487 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 217-359 chr8 53178371 53178511 + 2 NA Intergenic Intergenic 73196 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 220-37 chr10 10113941 10114094 + 2 NA Intergenic Intergenic 55295 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 450-262 chr6 70886007 70886328 + 2 NA intron (NM_080742, intron 2 of 3) MIRb|SINE|MIR 70893 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 240-100 chr12 19811276 19811460 + 2 NA Intergenic Intergenic -203317 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 240-92 chr11 127450260 127450405 + 2 NA Intergenic LTR67B|LTR|ERVL 179262 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 154-50 chr2 118339615 118339709 + 2 NA Intergenic L1MA7|LINE|L1 -153276 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 378-113 chr13 20504489 20504724 + 2 NA intron (NM_001363647, intron 2 of 6) intron (NM_001363647, intron 2 of 6) 21251 NM_015974 51084 Hs.370703 NM_015974 ENSG00000165475 CRYL1 GDH|HEL30|gul3DH|lambda-CRY crystallin lambda 1 protein-coding 330-211 chr17 66048286 66048607 + 2 NA intron (NM_001353129, intron 12 of 26) L1M5|LINE|L1 143446 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 233-173 chr2 101923145 101923334 + 2 NA Intergenic Intergenic -60226 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 212-340 chr8 139973760 139973944 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 126683 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 349-65 chr10 68841756 68842098 + 2 NA intron (NM_152709, intron 1 of 3) intron (NM_152709, intron 1 of 3) 14390 NM_001130159 219736 Hs.37636 NM_152709 ENSG00000165730 STOX1 C10orf24 storkhead box 1 protein-coding 177-151 chr7 51786674 51786817 + 2 NA Intergenic L1M5|LINE|L1 -393489 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 345-306 chr20 14033145 14033481 + 2 NA intron (NM_001351663, intron 2 of 17) L1M5|LINE|L1 37797 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 736-3 chr1 115317649 115318181 + 2 NA intron (NM_002506, intron 1 of 2) intron (NM_002506, intron 1 of 2) 20321 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 316-594 chr9 133246825 133246997 + 2 NA Intergenic Intergenic 28290 NM_020469 28 Hs.654423 NM_020469 ENSG00000175164 ABO A3GALNT|A3GALT1|GTB|NAGAT ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase protein-coding 247-332 chr5 102464343 102464536 + 2 NA intron (NM_173488, intron 4 of 13) L1ME3G|LINE|L1 34562 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 636-103 chr4 31858636 31859134 + 2 NA Intergenic L1MCa|LINE|L1 -138494 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 776-52 chr7 19598843 19599380 + 2 NA Intergenic L1PA16|LINE|L1 106325 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 354-115 chr13 22064393 22064607 + 2 NA Intergenic Intergenic -145785 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 117-18 chr2 66171384 66171475 + 2 NA Intergenic Intergenic 186899 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 289-261 chr20 16135052 16135300 + 2 NA Intergenic MIRb|SINE|MIR -149294 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 344-416 chr6 40149684 40149991 + 2 NA Intergenic Intergenic 206169 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 241-103 chr14 44622328 44622557 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger 115033 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 219-181 chr2 133199376 133199564 + 2 NA intron (NM_207481, intron 5 of 17) L1ME2|LINE|L1 -66725 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 183-31 chr12 27083395 27083513 + 2 NA promoter-TSS (NM_001080406) promoter-TSS (NM_001080406) -932 NM_001080406 728858 Hs.334003 NM_001080406 ENSG00000214700 C12orf71 - chromosome 12 open reading frame 71 protein-coding 342-482 chr7 38653850 38654182 + 2 NA Intergenic L1ME3C|LINE|L1 -22449 NM_139316 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 143-88 chr8 136367743 136367865 + 2 NA Intergenic Intergenic -162994 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 228-30 chr10 14778650 14778831 + 2 NA Intergenic MER41C|LTR|ERV1 -3843 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 564-172 chr6 65531190 65531611 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 48404 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 319-439 chr5 179188570 179188761 + 2 NA intron (NM_014244, intron 4 of 21) intron (NM_014244, intron 4 of 21) 128292 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 358-111 chr13 92300466 92300679 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 51635 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 304-538 chr8 126495170 126495446 + 2 NA Intergenic Intergenic 63170 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 353-428 chr5 153062136 153062322 + 2 NA Intergenic LTR53B|LTR|ERVL -89880 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 1061-19 chrX 39027902 39028646 + 2 NA Intergenic L1MA5|LINE|L1 -224391 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 493-313 chr9 83478751 83479077 + 2 NA intron (NM_174938, intron 1 of 13) L2c|LINE|L2 -11172 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 337-584 chr9 80399815 80400018 + 2 NA Intergenic Intergenic 424893 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 583-32 chr11 78529120 78529568 + 2 NA intron (NM_024678, intron 5 of 13) intron (NM_024678, intron 5 of 13) -3832 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 271-344 chr5 54716822 54717010 + 2 NA intron (NR_104658, intron 1 of 2) L1MA9|LINE|L1 -13592 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 685-33 chr16 82820820 82821313 + 2 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 47747 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 320-268 chr2 104093564 104093785 + 2 NA Intergenic Intergenic 314658 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 603-44 chr14 29952854 29953447 + 2 NA Intergenic Intergenic -25303 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 467-25 chr10 39122907 39123212 + 2 NA Intergenic ALR/Alpha|Satellite|centr 426463 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 344-323 chr3 102324205 102324412 + 2 NA Intergenic Intergenic -110707 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 247-354 chr6 40830275 40830439 + 2 NA Intergenic L1MD2|LINE|L1 192923 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 562-192 chr6 118773262 118773637 + 2 NA Intergenic Intergenic -9259 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 136-79 chr6 166454751 166454827 + 2 NA intron (NM_001006932, intron 13 of 21) intron (NM_001006932, intron 13 of 21) 10594 NR_046793 100874353 Hs.675698 NR_046793 ENSG00000232082 RPS6KA2-IT1 - RPS6KA2 intronic transcript 1 ncRNA 602-133 chr8 126791641 126792044 + 2 NA Intergenic Intergenic -221312 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 129-84 chrX 38542353 38542437 + 2 NA Intergenic Intergenic -19083 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 336-522 chr7 73958564 73958796 + 2 NA Intergenic L1MEf|LINE|L1 -69109 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 342-260 chr2 153977802 153978022 + 2 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 33518 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 386-51 chr11 40424346 40424622 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -131354 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 361-63 chr10 127701125 127701366 + 2 NA Intergenic Intergenic -35940 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 348-61 chr10 89906594 89906799 + 2 NA intron (NR_149079, intron 1 of 1) L1PA13|LINE|L1 18562 NR_149079 105378425 Hs.559891 NR_149079 ENSG00000280560 LINC01374 TCONS_00018278 long intergenic non-protein coding RNA 1374 ncRNA 388-380 chrX 96604113 96604428 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -80393 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 393-189 chr2 221129943 221130201 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 442232 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 514-223 chr5 51144802 51145183 + 2 NA Intergenic Intergenic -174805 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 507-6 chr1 60229033 60229373 + 2 NA Intergenic Intergenic -155433 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 395-280 chr5 129647964 129648286 + 2 NA intron (NM_133638, intron 12 of 22) intron (NM_133638, intron 12 of 22) -99969 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 588-130 chr5 129313785 129314236 + 2 NA Intergenic AluSx|SINE|Alu 83137 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 245-76 chr11 63222268 63222505 + 2 NA intron (NM_199352, intron 2 of 8) L1MA3|LINE|L1 7266 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 144-4 chr1 80392047 80392142 + 2 NA Intergenic Intergenic -143661 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 428-274 chr7 50272165 50272461 + 2 NA Intergenic Intergenic -31751 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 455-31 chr10 81527181 81527508 + 2 NA Intergenic Intergenic -347850 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 248-106 chr14 30411020 30411179 + 2 NA Intergenic AluSg7|SINE|Alu -148024 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 112-15 chr14 69866501 69866581 + 2 NA Intergenic MIRb|SINE|MIR -12875 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 354-53 chr10 61772174 61772458 + 2 NA Intergenic AluJr|SINE|Alu 109355 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 511-279 chr9 72267933 72268230 + 2 NA Intergenic AluSg|SINE|Alu -37355 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 258-157 chr17 31078124 31078288 + 2 NA Intergenic Intergenic 16219 NR_039886 100616266 NR_039886 ENSG00000265444 MIR4733 - microRNA 4733 ncRNA 325-382 chr4 30366910 30367208 + 2 NA Intergenic L1ME3F|LINE|L1 -353310 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 358-101 chr12 130656309 130656546 + 2 NA intron (NM_001351226, intron 1 of 21) intron (NM_001351226, intron 1 of 21) -22507 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 284-456 chrX 80828930 80829108 + 2 NA Intergenic L1MB8|LINE|L1 -19142 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 358-448 chr7 84763860 84764091 + 2 NA Intergenic Intergenic 231499 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 173-43 chr15 99387708 99387812 + 2 NA non-coding (NR_135756, exon 9 of 9) non-coding (NR_135756, exon 9 of 9) 130235 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 230-129 chr15 81578949 81579152 + 2 NA Intergenic L1ME5|LINE|L1 -204837 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 192-185 chr7 15416668 15416787 + 2 NA intron (NM_001004320, intron 5 of 12) intron (NM_001004320, intron 5 of 12) 145288 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 313-286 chr2 193010321 193010575 + 2 NA Intergenic Intergenic 260603 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 248-80 chr12 29510329 29510479 + 2 NA intron (NM_001367875, intron 19 of 19) DNA1_Mam|DNA|TcMar -10711 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 472-194 chr21 29105510 29105823 + 2 NA intron (NM_001286634, intron 5 of 7) L2c|LINE|L2 13412 NM_001286619 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 370-172 chr16 57856658 57856864 + 2 NA Intergenic L1MC|LINE|L1 46124 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 270-415 chr8 133984520 133984701 + 2 NA Intergenic Intergenic 98114 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 344-326 chr3 116828429 116828701 + 2 NA Intergenic L1M5|LINE|L1 21802 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 312-336 chr3 98662574 98662827 + 2 NA Intergenic Intergenic -69089 NM_000097 1371 Hs.476982 NM_000097 ENSG00000080819 CPOX COX|CPO|CPX|HCP coproporphyrinogen oxidase protein-coding 227-197 chr2 224138781 224138969 + 2 NA Intergenic L1MA9|LINE|L1 -99556 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 399-184 chr20 39395956 39396284 + 2 NA Intergenic Intergenic -171372 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 693-104 chr8 89001101 89001772 + 2 NA Intergenic HAL1|LINE|L1 -673953 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 327-310 chr21 31745821 31745986 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -13785 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 182-4 chr1 55758565 55758718 + 2 NA Intergenic L1M4a1|LINE|L1 186322 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 240-170 chr16 73859440 73859610 + 2 NA Intergenic MIR3|SINE|MIR 355996 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 410-238 chr5 46300856 46301131 + 2 NA Intergenic ALR/Alpha|Satellite|centr -604613 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 341-156 chr14 88291553 88291813 + 2 NA intron (NM_021161, intron 1 of 6) MER91B|DNA|hAT-Tip100 -20772 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 275-223 chr20 39780403 39780581 + 2 NA Intergenic L1ME3G|LINE|L1 -223969 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 347-516 chr8 91674365 91674568 + 2 NA Intergenic Intergenic 343214 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 213-256 chr6 165500673 165500818 + 2 NA intron (NM_006661, intron 3 of 22) LTR5_Hs|LTR|ERVK 161355 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 596-137 chr5 155345932 155346289 + 2 NA Intergenic L1MC4|LINE|L1 332355 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 183-6 chr1 219163573 219163717 + 2 NA intron (NR_038845, intron 1 of 4) MamRTE1|LINE|RTE-BovB 10143 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 368-452 chr8 83292339 83292600 + 2 NA Intergenic Intergenic -111289 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 394-233 chr4 30436803 30437111 + 2 NA Intergenic Intergenic -283412 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 550-174 chr4 172595760 172596155 + 2 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 92960 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 332-180 chr16 35649285 35649589 + 2 NA Intergenic ALR/Alpha|Satellite|centr -97115 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 434-135 chr2 30408796 30409221 + 2 NA Intergenic Intergenic -38238 NM_001002257 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 454-128 chr18 71365082 71365466 + 2 NA Intergenic Intergenic 213682 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 407-7 chr1 91661842 91662144 + 2 NA Intergenic Intergenic 160885 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 459-267 chr6 155717673 155718001 + 2 NA Intergenic L1MA6|LINE|L1 202993 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 529-110 chr2 116679976 116680411 + 2 NA Intergenic L2b|LINE|L2 -1134498 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 532-124 chr2 81995037 81995409 + 2 NA Intergenic Intergenic -528277 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 513-77 chr14 66245165 66245650 + 2 NA Intergenic Intergenic -240964 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 414-57 chr11 133771878 133772176 + 2 NA Intergenic MER68B|LTR|ERVL 38349 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 322-266 chr2 125068497 125068705 + 2 NA Intergenic L1MB7|LINE|L1 1043314 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 506-222 chr5 9864722 9865130 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) 10549 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 518-78 chr14 46679440 46679824 + 2 NA Intergenic Intergenic -27851 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 621-50 chr19 50577120 50577559 + 2 NA Intergenic AluJb|SINE|Alu -8904 NM_001080457 94030 Hs.120873 NM_001080457 ENSG00000131409 LRRC4B HSM|LRIG4|NGL-3 leucine rich repeat containing 4B protein-coding 134-44 chr2 95160595 95160714 + 2 NA promoter-TSS (NM_032788) promoter-TSS (NM_032788) -806 NM_032788 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 242-194 chr2 114905980 114906152 + 2 NA intron (NM_001321910, intron 2 of 26) L1M4b|LINE|L1 -72518 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 292-369 chr5 175054442 175054634 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -58807 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 474-14 chr1 154377189 154377552 + 2 NA Intergenic MER75|DNA|PiggyBac -27823 NM_001206866 3570 Hs.135087 NM_000565 ENSG00000160712 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 372-503 chr8 139780934 139781218 + 2 NA intron (NM_001160372, intron 21 of 22) L1MC1|LINE|L1 -77953 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 242-131 chr16 76259228 76259456 + 2 NA Intergenic Intergenic -18059 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 478-88 chr14 84559614 84559906 + 2 NA Intergenic MER52-int|LTR|ERV1 -712172 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 314-263 chr2 19470873 19471137 + 2 NA Intergenic Intergenic -112382 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 506-163 chr2 225396502 225396831 + 2 NA Intergenic Intergenic -3044 NM_001371273 300-294 chr3 149785181 149785392 + 2 NA intron (NM_001144960, intron 2 of 5) L1PA5|LINE|L1 7268 NM_001315506 389161 Hs.665988 NM_001144960 ENSG00000206199 ANKUB1 C3orf16 ankyrin repeat and ubiquitin domain containing 1 protein-coding 490-303 chr8 128420711 128421167 + 2 NA intron (NR_121672, intron 5 of 7) intron (NR_121672, intron 5 of 7) 143740 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 151-15 chr10 96552270 96552367 + 2 NA intron (NM_020123, intron 6 of 14) AluJr4|SINE|Alu 34694 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 281-180 chr18 67396619 67396842 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 -119816 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 514-182 chr3 29228159 29228624 + 2 NA Intergenic Intergenic 52548 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 415-161 chr21 23952398 23952696 + 2 NA Intergenic Intergenic 368830 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 263-165 chr18 23233382 23233549 + 2 NA intron (NR_023359, intron 4 of 6) MIRc|SINE|MIR 77640 NM_138375 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 372-466 chr7 110240525 110240761 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -280430 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 298-372 chr5 95886422 95886718 + 2 NA 3' UTR (NM_012081, exon 12 of 12) 3' UTR (NM_012081, exon 12 of 12) 34338 NR_026936 202299 Hs.8373 NM_175616 ENSG00000236882 LINC01554 C5orf27|FIS long intergenic non-protein coding RNA 1554 ncRNA 274-311 chr5 65180109 65180324 + 2 NA intron (NR_135689, intron 23 of 25) intron (NR_135689, intron 23 of 25) 301704 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 672-93 chr6 27358493 27358862 + 2 NA non-coding (NR_002722, exon 4 of 4) non-coding (NR_002722, exon 4 of 4) 12848 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 496-210 chr5 51216559 51217001 + 2 NA Intergenic L1ME4a|LINE|L1 166552 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 327-514 chr9 4074916 4075207 + 2 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 77122 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 180-60 chr16 63441432 63441568 + 2 NA Intergenic Intergenic -1405062 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 353-396 chr5 2891615 2891928 + 2 NA Intergenic Intergenic -26083 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 262-277 chr3 68472668 68472857 + 2 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) -27875 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 241-112 chr14 62768382 62768576 + 2 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 276979 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 350-266 chr20 4684886 4685201 + 2 NA Intergenic Intergenic -1413 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 513-25 chr10 42299345 42299697 + 2 NA Intergenic Intergenic 68524 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 348-161 chr15 81118148 81118444 + 2 NA Intergenic Intergenic -15974 NM_173528 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 290-223 chr2 142589757 142589999 + 2 NA Intergenic Intergenic -287786 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 229-219 chr2 225282754 225282912 + 2 NA Intergenic Intergenic -116877 NM_001371273 251-265 chr4 41024566 41024744 + 2 NA intron (NM_173075, intron 5 of 16) LTR76|LTR|ERV1 -167463 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 337-146 chr14 40407637 40407881 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -546952 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 295-216 chr2 79402364 79402572 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger 98376 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 346-450 chr6 161387015 161387256 + 2 NA intron (NM_004562, intron 9 of 11) L2c|LINE|L2 -83842 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 566-89 chr2 60221820 60222290 + 2 NA Intergenic Intergenic 160981 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 360-312 chr3 114637284 114637473 + 2 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -12433 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 463-204 chr4 28630173 28630605 + 2 NA Intergenic Intergenic -189193 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 260-378 chr6 68834378 68834547 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 199180 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 380-265 chr3 189198530 189198777 + 2 NA intron (NM_198485, intron 1 of 5) L2c|LINE|L2 26682 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 400-165 chr2 61653764 61654060 + 2 NA Intergenic AluJr|SINE|Alu -115556 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 490-203 chr4 71699671 71700112 + 2 NA Intergenic Intergenic 84188 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 202-83 chr15 42467128 42467272 + 2 NA intron (NM_001366844, intron 2 of 19) intron (NM_001366844, intron 2 of 19) -9633 NM_001284306 64397 Hs.511143 NM_022473 ENSG00000103994 ZNF106 SH3BP3|ZFP106|ZNF474 zinc finger protein 106 protein-coding 402-170 chr2 156120187 156120563 + 2 NA intron (NR_110250, intron 1 of 3) AluY|SINE|Alu 134556 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 307-507 chr9 13949919 13950173 + 2 NA Intergenic Intergenic 22075 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 638-150 chr7 136625746 136626233 + 2 NA Intergenic L1MDb|LINE|L1 -242663 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 254-255 chr3 127112153 127112286 + 2 NA Intergenic L1M4|LINE|L1 -80912 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 343-565 chr8 136505595 136505828 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -25087 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 424-189 chr4 46105823 46106102 + 2 NA intron (NM_173536, intron 1 of 8) intron (NM_173536, intron 1 of 8) 18092 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 301-484 chr9 82249466 82249643 + 2 NA Intergenic Intergenic 260782 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 312-375 chr4 69598737 69599013 + 2 NA intron (NM_001105677, intron 2 of 5) intron (NM_001105677, intron 2 of 5) 40767 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 388-168 chr2 115021628 115022010 + 2 NA intron (NM_001321910, intron 2 of 26) L1PB1|LINE|L1 -42754 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 230-284 chr5 3629140 3629295 + 2 NA Intergenic Intergenic 33385 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 368-458 chr8 106265128 106265347 + 2 NA Intergenic Intergenic -4941 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 364-215 chr2 106764116 106764322 + 2 NA Intergenic AluY|SINE|Alu 121809 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 236-71 chr11 95145590 95145785 + 2 NA Intergenic Intergenic -4852 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 513-229 chr5 112301899 112302255 + 2 NA intron (NM_001347887, intron 2 of 23) Charlie2b|DNA|hAT-Charlie 73794 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 479-167 chr4 83896396 83896855 + 2 NA Intergenic Intergenic 360517 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 290-5 chr1 43521237 43521479 + 2 NA Intergenic Intergenic -4679 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 255-387 chr7 51256788 51256925 + 2 NA intron (NM_015198, intron 1 of 12) intron (NM_015198, intron 1 of 12) 59953 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 403-96 chr14 54954045 54954424 + 2 NA intron (NM_007086, intron 24 of 25) AluSx|SINE|Alu -51408 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 267-370 chr6 68007192 68007373 + 2 NA Intergenic Intergenic -48069 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 293-387 chr7 9275951 9276134 + 2 NA Intergenic L1MB8|LINE|L1 -358228 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 331-465 chr6 104259194 104259415 + 2 NA Intergenic Intergenic 600242 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 400-19 chr1 184245349 184245670 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -141520 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 340-351 chr3 7495731 7496015 + 2 NA intron (NM_000844, intron 7 of 9) L1MDb|LINE|L1 39411 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 601-116 chr5 9267140 9267648 + 2 NA intron (NM_003966, intron 5 of 22) L3|LINE|CR1 -213499 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 402-263 chr5 30825657 30825916 + 2 NA Intergenic L1PA16|LINE|L1 -367900 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 338-485 chr7 7380484 7380800 + 2 NA intron (NM_001037763, intron 30 of 34) intron (NM_001037763, intron 30 of 34) 125488 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 392-324 chr8 87212852 87213196 + 2 NA intron (NM_173538, intron 5 of 10) L1MB7|LINE|L1 346609 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 220-97 chr12 132926948 132927103 + 2 NA exon (NM_183238, exon 5 of 5) exon (NM_183238, exon 5 of 5) 29281 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 320-324 chr22 27179109 27179391 + 2 NA Intergenic Intergenic -8266 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 265-219 chr20 55496166 55496393 + 2 NA Intergenic L1PA7|LINE|L1 -69082 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 193-128 chr20 33584714 33584859 + 2 NA intron (NM_005093, intron 2 of 11) intron (NM_005093, intron 2 of 11) 22421 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 340-96 chr12 1986925 1987219 + 2 NA intron (NM_152640, intron 3 of 8) intron (NM_152640, intron 3 of 8) 17385 NM_152640 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 487-305 chr9 28499703 28500086 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 219411 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 235-204 chr20 54282921 54283136 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 74941 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 439-92 chr14 74672451 74672828 + 2 NA intron (NM_001039479, intron 11 of 19) AluJb|SINE|Alu 40441 NM_001039479 9870 Hs.497417 NM_014821 ENSG00000119682 AREL1 FIEL1|KIAA0317 apoptosis resistant E3 ubiquitin protein ligase 1 protein-coding 170-104 chr4 32000404 32000539 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) 3092 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 157-131 chr8 124331084 124331204 + 2 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 41555 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 144-88 chr6 39490091 39490208 + 2 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -58759 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 294-511 chrX 6014596 6014776 + 2 NA intron (NM_001282145, intron 4 of 6) L2|LINE|L2 -211672 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 437-291 chr9 24707680 24708046 + 2 NA Intergenic L1MC4|LINE|L1 -161966 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 245-377 chrX 78250371 78250526 + 2 NA Intergenic L1PB4|LINE|L1 77163 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 365-145 chr16 71771538 71771772 + 2 NA intron (NM_001128, intron 4 of 22) intron (NM_001128, intron 4 of 22) -13168 NR_003059 692111 NR_003059 ENSG00000223224 SNORD71 HBII-239|MIRN768|hsa-mir-768 small nucleolar RNA, C/D box 71 snoRNA 299-137 chr14 62953210 62953403 + 2 NA intron (NM_139318, intron 6 of 10) L2c|LINE|L2 92152 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 439-120 chr19 44258545 44258871 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -1172 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 349-15 chr1 72382539 72382803 + 2 NA Intergenic Intergenic -100132 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 559-192 chr8 130197584 130198059 + 2 NA intron (NM_001362925, intron 5 of 29) LTR32|LTR|ERVL 98712 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 341-587 chrX 130728360 130728652 + 2 NA intron (NM_182314, intron 3 of 15) LTR41|LTR|ERVL -74130 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 512-207 chr5 12183250 12183711 + 2 NA Intergenic Intergenic -279034 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 151-46 chr21 18971764 18971866 + 2 NA Intergenic Intergenic -212003 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 182-51 chr14 56322097 56322224 + 2 NA Intergenic Intergenic -192171 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 579-84 chr20 19383215 19383672 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -98847 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 328-256 chr2 52675097 52675273 + 2 NA Intergenic Intergenic 27430 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 366-461 chr8 139555464 139555666 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 147558 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 496-75 chr14 29249781 29250130 + 2 NA Intergenic L1MC1|LINE|L1 -464168 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 521-62 chr12 27325558 27325922 + 2 NA 3' UTR (NM_015000, exon 14 of 14) 3' UTR (NM_015000, exon 14 of 14) -7096 NM_001248002 56938 Hs.445447 NM_020183 ENSG00000029153 ARNTL2 BMAL2|CLIF|MOP9|PASD9|bHLHe6 aryl hydrocarbon receptor nuclear translocator like 2 protein-coding 136-66 chr4 101122102 101122189 + 2 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 118727 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 715-81 chr6 164869146 164869562 + 2 NA Intergenic L1MCc|LINE|L1 -47291 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 538-26 chr10 34543900 34544221 + 2 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 271236 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 271-266 chr3 67771654 67771892 + 2 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 117076 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 389-125 chr16 80731182 80731377 + 2 NA intron (NM_152342, intron 1 of 6) HAL1|LINE|L1 73319 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 238-133 chr16 82450527 82450726 + 2 NA Intergenic Intergenic -176343 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 161-11 chr10 61728073 61728207 + 2 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 65179 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 325-366 chr3 171660885 171661164 + 2 NA intron (NM_002662, intron 20 of 26) L1MD3|LINE|L1 149459 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 330-351 chr3 89768182 89768405 + 2 NA Intergenic L1PA10|LINE|L1 660672 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 362-63 chr10 58142953 58143224 + 2 NA Intergenic LTR49|LTR|ERV1 124806 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 349-446 chr6 61819072 61819334 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 245073 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 321-589 chr9 24153045 24153241 + 2 NA Intergenic Intergenic -302542 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 394-176 chr2 100827712 100827964 + 2 NA intron (NM_002518, intron 1 of 20) L1PA16|LINE|L1 7699 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 305-269 chr2 123078732 123078935 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie -5352 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 220-169 chr2 78233439 78233620 + 2 NA intron (NR_110288, intron 1 of 3) Tigger2a|DNA|TcMar-Tigger 57202 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 296-35 chr10 29199978 29200208 + 2 NA Intergenic Intergenic -88977 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 368-108 chr12 64772857 64773130 + 2 NA intron (NM_001330187, intron 1 of 13) intron (NM_001330187, intron 1 of 13) -7762 NM_001330188 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 210-223 chr5 39692953 39693107 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 172599 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 250-139 chr15 69638361 69638557 + 2 NA intron (NR_126437, intron 3 of 5) L1MD1|LINE|L1 46259 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 553-205 chr6 43300661 43301033 + 2 NA intron (NM_153320, intron 4 of 9) AluJb|SINE|Alu 2587 NM_153320 10864 Hs.485438 NM_006672 ENSG00000137204 SLC22A7 NLT|OAT2|hOAT11 solute carrier family 22 member 7 protein-coding 286-397 chr6 140337402 140337594 + 2 NA Intergenic MER52-int|LTR|ERV1 132246 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 367-464 chr8 122282572 122282917 + 2 NA Intergenic L1MD3|LINE|L1 285900 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 367-478 chr9 100882097 100882280 + 2 NA Intergenic Intergenic -146539 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 450-51 chr11 81961708 81962048 + 2 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) -71042 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 279-426 chr8 131679957 131680144 + 2 NA Intergenic Intergenic -224043 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 251-15 chr1 157684772 157685008 + 2 NA intron (NM_052939, intron 10 of 14) intron (NM_052939, intron 10 of 14) 15879 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 475-155 chr2 215874931 215875361 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy -31610 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 284-220 chr2 192695818 192696015 + 2 NA Intergenic Intergenic -53929 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 332-223 chr19 21250348 21250530 + 2 NA Intergenic L1PREC2|LINE|L1 78971 NM_021269 7562 Hs.466296 NM_021269 ENSG00000182141 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 231-314 chr6 125576146 125576319 + 2 NA Intergenic L1PA16|LINE|L1 -98121 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 269-243 chr3 3951380 3951570 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -150600 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 563-46 chr13 65410568 65410878 + 2 NA Intergenic MIRb|SINE|MIR -455324 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 286-17 chr1 86825240 86825499 + 2 NA Intergenic LTR33|LTR|ERVL 88757 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 339-295 chr2 198001770 198002030 + 2 NA intron (NM_006226, intron 1 of 5) MER1A|DNA|hAT-Charlie 197307 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 275-226 chr20 43890108 43890340 + 2 NA Intergenic L1MB7|LINE|L1 -4494 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 179-126 chr8 127110614 127110748 + 2 NA Intergenic Intergenic -28460 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 188-154 chr4 97555702 97555818 + 2 NA Intergenic Intergenic 188834 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 626-57 chr19 56563189 56563557 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -4095 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 533-157 chr4 66745847 66746353 + 2 NA Intergenic AluJo|SINE|Alu 469276 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 473-92 chr14 88907416 88907864 + 2 NA Intergenic MER51A|LTR|ERV1 82989 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 192-177 chr6 95001466 95001654 + 2 NA Intergenic Intergenic 575891 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 312-286 chr20 17106912 17107093 + 2 NA Intergenic Intergenic -119105 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 372-285 chr20 40195276 40195533 + 2 NA Intergenic L2a|LINE|L2 190943 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 137-94 chr8 140122512 140122605 + 2 NA intron (NM_001160372, intron 17 of 22) MIRb|SINE|MIR -22023 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 296-391 chr5 170735649 170735824 + 2 NA intron (NM_001278339, intron 7 of 7) intron (NM_001278339, intron 7 of 7) -47983 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 362-330 chr5 4627572 4627778 + 2 NA Intergenic Intergenic -145806 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 484-144 chr2 181405865 181406296 + 2 NA Intergenic Intergenic -50812 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 234-224 chr22 32646955 32647124 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -153777 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 194-133 chr3 159340107 159340282 + 2 NA intron (NM_001197108, intron 1 of 6) Charlie2b|DNA|hAT-Charlie 57548 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 160-78 chr4 83122846 83122935 + 2 NA Intergenic L1M5|LINE|L1 -8161 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 552-230 chrX 12636087 12636451 + 2 NA intron (NM_001368400, intron 3 of 15) L1MC5|LINE|L1 137589 NM_001368400 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 620-78 chr21 20661847 20662288 + 2 NA Intergenic Intergenic 141041 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 340-255 chr2 72124616 72124886 + 2 NA Intergenic L1MD2|LINE|L1 23111 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 254-279 chr4 92746669 92746843 + 2 NA intron (NM_001286838, intron 2 of 14) MIR3|SINE|MIR 442357 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 437-196 chr4 124698786 124699085 + 2 NA intron (NM_001167882, intron 1 of 3) L1M5|LINE|L1 13797 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 616-36 chr12 126834508 126834952 + 2 NA Intergenic L1PA16|LINE|L1 39960 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 396-344 chr8 19971378 19971709 + 2 NA Intergenic L2|LINE|L2 32290 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 348-31 chr1 189594556 189594818 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 881323 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 429-300 chr8 86132639 86132927 + 2 NA intron (NM_152565, intron 2 of 7) L1MA4A|LINE|L1 33873 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 162-56 chr2 68602917 68603033 + 2 NA Intergenic L1MB2|LINE|L1 -40613 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 237-176 chr2 64201439 64201655 + 2 NA intron (NR_033837, intron 2 of 5) intron (NR_033837, intron 2 of 5) 3938 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 380-197 chr2 138051545 138051882 + 2 NA Intergenic Intergenic -50171 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 238-126 chr16 31900346 31900551 + 2 NA intron (NR_049749, intron 4 of 4) AluY|SINE|Alu 26641 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 466-279 chr8 131622374 131622713 + 2 NA Intergenic L1MC3|LINE|L1 -281550 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 461-134 chr2 96494826 96495146 + 2 NA Intergenic L1M4|LINE|L1 10371 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 638-136 chr6 66307289 66307847 + 2 NA Intergenic L1MDa|LINE|L1 519689 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 331-378 chr4 57538550 57538870 + 2 NA Intergenic MIR|SINE|MIR 112838 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 557-146 chr4 31905248 31905613 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -91949 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 533-153 chr4 57924499 57924841 + 2 NA Intergenic Intergenic 498798 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 226-205 chr20 55669194 55669368 + 2 NA Intergenic Intergenic -242084 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 239-246 chr3 88660557 88660758 + 2 NA Intergenic MIRc|SINE|MIR 322201 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 529-102 chr2 76001606 76001972 + 2 NA Intergenic L1MA8|LINE|L1 -290874 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 269-387 chr7 73389707 73389884 + 2 NA Intergenic L1M4b|LINE|L1 -43983 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 188-96 chr2 63954061 63954185 + 2 NA intron (NM_001005739, intron 7 of 22) L1MC5|LINE|L1 65305 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 217-346 chr7 30816770 30816896 + 2 NA intron (NR_037598, intron 7 of 19) intron (NR_037598, intron 7 of 19) 45416 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 560-187 chr8 111921721 111922112 + 2 NA Intergenic L1MDa|LINE|L1 545277 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 375-8 chr1 70134551 70134903 + 2 NA 3' UTR (NM_001366841, exon 27 of 27) 3' UTR (NM_001366841, exon 27 of 27) 70852 NM_017768 55631 Hs.147836 NM_017768 ENSG00000066557 LRRC40 dJ677H15.1 leucine rich repeat containing 40 protein-coding 350-339 chr4 24731285 24731577 + 2 NA Intergenic Intergenic -64142 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 429-295 chr8 58653381 58653783 + 2 NA intron (NM_003580, intron 1 of 30) L1MEd|LINE|L1 5825 NM_001144772 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 305-197 chr17 53075812 53076005 + 2 NA Intergenic L1PREC2|LINE|L1 90403 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 477-47 chr10 88638661 88638977 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -25623 NM_001198830 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 355-98 chr11 88575058 88575251 + 2 NA intron (NM_001143831, intron 6 of 8) intron (NM_001143831, intron 6 of 8) 70578 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 522-129 chr2 60659194 60659573 + 2 NA Intergenic Intergenic -96885 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 337-578 chr9 69942945 69943256 + 2 NA Intergenic L1MB8|LINE|L1 -100481 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 295-313 chr3 177485787 177486074 + 2 NA intron (NR_047568, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 44009 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 365-171 chr19 37415870 37416109 + 2 NA intron (NM_001330482, intron 4 of 4) AluJb|SINE|Alu 44890 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 197-220 chr8 134286601 134286768 + 2 NA Intergenic Intergenic -311387 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 433-230 chr5 127443151 127443481 + 2 NA intron (NM_001256545, intron 19 of 24) MIRb|SINE|MIR -74324 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 477-15 chr1 110801439 110801889 + 2 NA Intergenic L1M5|LINE|L1 -69535 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 658-20 chr10 95160407 95160828 + 2 NA Intergenic L1MD1|LINE|L1 -33583 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 174-81 chr21 27229859 27229981 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger -262832 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 366-162 chr17 34705253 34705448 + 2 NA Intergenic AluJb|SINE|Alu 124601 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 357-490 chrX 51089392 51089642 + 2 NA Intergenic L1ME3G|LINE|L1 81904 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 428-302 chr8 99004356 99004697 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -8740 NM_015243 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 345-133 chr13 48997161 48997389 + 2 NA intron (NR_103528, intron 1 of 25) intron (NR_103528, intron 1 of 25) 20613 NR_103528 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 201-137 chr20 55533753 55533927 + 2 NA Intergenic Intergenic -106643 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 225-317 chr7 5198904 5199045 + 2 NA intron (NM_001278299, intron 2 of 12) L1MA9|LINE|L1 8741 NM_001033518 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 287-85 chr11 30577777 30578043 + 2 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 2583 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 320-174 chr15 79255545 79255827 + 2 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) -27036 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 418-308 chr9 117245009 117245375 + 2 NA intron (NM_014010, intron 2 of 21) intron (NM_014010, intron 2 of 21) -63991 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 353-216 chr18 71650746 71651046 + 2 NA Intergenic MLT2B2|LTR|ERVL -71940 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 316-79 chr10 83173643 83173897 + 2 NA Intergenic L1M1|LINE|L1 503319 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 271-362 chr5 151551026 151551183 + 2 NA intron (NM_001447, intron 6 of 22) Charlie15a|DNA|hAT-Charlie 17840 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 326-181 chr15 100630433 100630734 + 2 NA TTS (NM_024708) TTS (NM_024708) 27994 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 253-209 chr2 201298366 201298551 + 2 NA intron (NR_110620, intron 11 of 13) L1MEc|LINE|L1 37922 NM_033356 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 307-395 chr5 130592256 130592553 + 2 NA Intergenic L1MA5|LINE|L1 572852 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 539-128 chr2 165731080 165731529 + 2 NA Intergenic L1ME2|LINE|L1 62943 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 391-307 chr6 61506461 61506779 + 2 NA Intergenic ALR/Alpha|Satellite|centr -67510 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 323-9 chr1 57950426 57950659 + 2 NA intron (NM_021080, intron 1 of 16) L2c|LINE|L2 89961 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 500-148 chr2 122984559 122985000 + 2 NA Intergenic Intergenic 88702 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 282-288 chr3 18224677 18224934 + 2 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 200534 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 350-338 chr4 22361256 22361512 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -21718 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 178-2 chr1 29957985 29958108 + 2 NA Intergenic Intergenic 79566 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 222-353 chr7 111620740 111620891 + 2 NA Intergenic L1MB8|LINE|L1 -58298 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 311-497 chr8 55153712 55153993 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 51824 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 241-359 chr7 23453238 23453395 + 2 NA intron (NM_006547, intron 2 of 14) intron (NM_006547, intron 2 of 14) 17175 NM_006547 10643 Hs.700696 NM_006547 ENSG00000136231 IGF2BP3 CT98|IMP-3|IMP3|KOC|KOC1|VICKZ3 insulin like growth factor 2 mRNA binding protein 3 protein-coding 337-269 chr2 125699031 125699223 + 2 NA Intergenic Intergenic 418858 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 547-55 chr12 125617487 125617904 + 2 NA intron (NM_052907, intron 5 of 8) L1MB7|LINE|L1 -4757 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 355-327 chr3 88678241 88678484 + 2 NA Intergenic Intergenic 339906 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 354-321 chr4 44121479 44121826 + 2 NA Intergenic Intergenic 104590 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 506-210 chr4 101597910 101598200 + 2 NA Intergenic Intergenic -192552 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 373-298 chr4 148568078 148568430 + 2 NA Intergenic Intergenic -123556 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 429-265 chr6 166170782 166171047 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -2245 NM_001270484 6862 Hs.389457 NM_003181 ENSG00000164458 TBXT SAVA|T|TFT T-box transcription factor T protein-coding 663-44 chr17 65304754 65305361 + 2 NA Intergenic Intergenic -152484 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 377-148 chr16 52299690 52300006 + 2 NA Intergenic Intergenic 41284 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 381-209 chr2 152534328 152534522 + 2 NA intron (NM_052905, intron 2 of 25) intron (NM_052905, intron 2 of 25) 183036 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 344-465 chr7 93204462 93204723 + 2 NA intron (NM_001346642, intron 4 of 9) intron (NM_001346642, intron 4 of 9) 14979 NM_001288810 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 275-38 chr10 33132414 33132606 + 2 NA Intergenic AluJr|SINE|Alu -15703 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 264-253 chr21 26906904 26907117 + 2 NA Intergenic Intergenic -46951 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 229-259 chr3 129947281 129947479 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -27340 NM_007117 7200 Hs.182231 NM_007117 ENSG00000170893 TRH Pro-TRH|TRF thyrotropin releasing hormone protein-coding 212-343 chr9 28158970 28159108 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 560266 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 270-421 chr9 16698787 16698986 + 2 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -27928 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 370-178 chr17 33702517 33702729 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -168863 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 384-180 chr2 128032073 128032450 + 2 NA Intergenic LTR8B|LTR|ERV1 -4202 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 236-72 chr11 96943151 96943317 + 2 NA Intergenic L1MEc|LINE|L1 434809 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 285-454 chr9 35665530 35665736 + 2 NA promoter-TSS (NM_032818) promoter-TSS (NM_032818) -438 NM_032818 84904 Hs.534579 NM_032818 ENSG00000137135 ARHGEF39 C9orf100 Rho guanine nucleotide exchange factor 39 protein-coding 266-77 chr11 122459178 122459391 + 2 NA Intergenic L1MB2|LINE|L1 -36413 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 652-41 chr15 57419686 57420150 + 2 NA intron (NM_032866, intron 1 of 18) L1MC3|LINE|L1 43413 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 287-90 chr11 58487074 58487293 + 2 NA Intergenic ERVL-int|LTR|ERVL 20922 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 535-209 chr5 148993915 148994316 + 2 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 68294 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 424-192 chr4 59144154 59144500 + 2 NA Intergenic Intergenic 130754 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 309-13 chr1 107203260 107203484 + 2 NA intron (NM_001113226, intron 1 of 6) L1MEi|LINE|L1 55303 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 265-92 chr13 69541474 69541669 + 2 NA Intergenic Intergenic 319225 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 195-17 chr10 6040914 6041055 + 2 NA intron (NM_000417, intron 1 of 7) intron (NM_000417, intron 1 of 7) 21383 NM_001308242 3559 Hs.231367 NM_000417 ENSG00000134460 IL2RA CD25|IDDM10|IL2R|IMD41|TCGFR|p55 interleukin 2 receptor subunit alpha protein-coding 382-325 chr5 52267021 52267260 + 2 NA Intergenic Intergenic 259109 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 264-194 chr2 31699487 31699637 + 2 NA Intergenic L1M3b|LINE|L1 104418 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 337-18 chr1 107572677 107572912 + 2 NA 3' UTR (NM_001079874, exon 10 of 10) 3' UTR (NM_001079874, exon 10 of 10) 115705 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 504-198 chr4 110024905 110025381 + 2 NA Intergenic UCON20|Unknown|Unknown 112260 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 386-326 chr7 40646251 40646456 + 2 NA intron (NM_001193312, intron 11 of 12) L2c|LINE|L2 333586 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 267-207 chr2 134491723 134491926 + 2 NA intron (NM_030923, intron 5 of 7) intron (NM_030923, intron 5 of 7) 227176 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 391-376 chr9 27947625 27947987 + 2 NA 3' UTR (NM_001258282, exon 7 of 7) 3' UTR (NM_001258282, exon 7 of 7) -373940 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 265-76 chr12 32010608 32010808 + 2 NA Intergenic Intergenic 51293 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 1160-10 chr7 49990386 49991160 + 2 NA intron (NM_001159878, intron 6 of 7) intron (NM_001159878, intron 6 of 7) 102473 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 368-38 chr10 10746500 10746789 + 2 NA intron (NM_001326317, intron 2 of 14) LFSINE_Vert|SINE|tRNA 48270 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 208-268 chr8 118102556 118102735 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 9174 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 314-592 chr8 138377883 138378054 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 119293 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 532-81 chr15 72990086 72990477 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -62182 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 425-128 chr19 46205195 46205552 + 2 NA Intergenic LTR9D|LTR|ERV1 -2311 NR_135234 645553 Hs.613068 NR_135234 IGFL2-AS1 - IGFL2 antisense RNA 1 ncRNA 404-348 chrX 22220012 22220253 + 2 NA intron (NM_001282754, intron 17 of 20) intron (NM_001282754, intron 17 of 20) -47149 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 749-38 chr16 6200999 6201590 + 2 NA intron (NM_018723, intron 1 of 15) L1MA3|LINE|L1 181591 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 463-172 chr21 31416341 31416715 + 2 NA intron (NM_001353690, intron 1 of 27) L1PB2|LINE|L1 -72174 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 241-324 chr6 20367380 20367603 + 2 NA Intergenic Intergenic -34388 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 346-233 chr2 35964198 35964383 + 2 NA Intergenic AluSq2|SINE|Alu 391280 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 281-205 chr2 55038403 55038555 + 2 NA intron (NM_001321904, intron 2 of 9) L1ME2|LINE|L1 8847 NM_001321863 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 315-422 chr6 87760903 87761203 + 2 NA Intergenic Intergenic -23807 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 598-127 chr7 9657885 9658344 + 2 NA Intergenic L1ME3A|LINE|L1 23844 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 595-52 chr14 87713600 87714141 + 2 NA Intergenic L2a|LINE|L2 -58576 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 210-76 chr14 72639189 72639335 + 2 NA intron (NM_001280542, intron 8 of 10) L2c|LINE|L2 122442 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 207-95 chr16 6969113 6969252 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 195373 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 189-105 chr2 211239301 211239485 + 2 NA Intergenic Intergenic 621822 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 281-121 chr14 65316033 65316196 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 19069 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 250-146 chr16 26471786 26471938 + 2 NA Intergenic L1M1|LINE|L1 446625 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 495-80 chr17 4683968 4684286 + 2 NA intron (NM_001278241, intron 3 of 18) intron (NM_001278241, intron 3 of 18) 20010 NM_001278241 27043 Hs.744899 NM_014389 ENSG00000141456 PELP1 MNAR|P160 proline, glutamate and leucine rich protein 1 protein-coding 247-110 chr14 28813227 28813411 + 2 NA Intergenic Intergenic -27532 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 247-303 chr4 99349307 99349463 + 2 NA intron (NR_133005, intron 1 of 8) intron (NR_133005, intron 1 of 8) 3361 NR_133005 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 716-49 chr3 50660320 50660897 + 2 NA Intergenic Intergenic -14319 NM_004947 1795 Hs.476284 NM_004947 ENSG00000088538 DOCK3 MOCA|NEDIDHA|PBP dedicator of cytokinesis 3 protein-coding 251-100 chr14 72753234 72753435 + 2 NA exon (NM_012074, exon 3 of 10) exon (NM_012074, exon 3 of 10) 139315 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 408-222 chr3 193368917 193369311 + 2 NA intron (NM_198505, intron 1 of 29) AluJr|SINE|Alu 9639 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 161-128 chr8 120356034 120356157 + 2 NA intron (NM_021110, intron 45 of 47) intron (NM_021110, intron 45 of 47) 89055 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 189-42 chr12 58489919 58490026 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -101730 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 119-55 chr7 82960065 82960161 + 2 NA intron (NM_033026, intron 4 of 24) intron (NM_033026, intron 4 of 24) 202771 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 320-371 chr3 190236835 190237035 + 2 NA Intergenic MER34C_|LTR|ERV1 85511 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 253-396 chr7 124065353 124065573 + 2 NA Intergenic Intergenic -32396 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 219-27 chr10 8658895 8659038 + 2 NA Intergenic Intergenic -64575 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 414-282 chr6 6603850 6604108 + 2 NA intron (NM_004271, intron 1 of 4) L1MEd|LINE|L1 15259 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 329-104 chr11 116389509 116389793 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -249771 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 294-139 chr15 61388794 61389043 + 2 NA Intergenic Intergenic -159616 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 437-91 chr15 97664265 97664589 + 2 NA Intergenic L1ME2|LINE|L1 -103729 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 323-580 chr9 72846985 72847164 + 2 NA Intergenic L1PB1|LINE|L1 27035 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 321-132 chr12 47014829 47015090 + 2 NA Intergenic Intergenic -64644 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 327-468 chr7 97216767 97217008 + 2 NA Intergenic L1MA7|LINE|L1 100294 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 282-377 chr5 59255210 59255427 + 2 NA intron (NM_001165899, intron 3 of 16) L1MB8|LINE|L1 20797 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 257-392 chr7 85944303 85944512 + 2 NA Intergenic L1MA3|LINE|L1 523285 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 257-19 chr1 152529804 152530022 + 2 NA Intergenic L1PREC2|LINE|L1 15431 NM_019060 54544 Hs.110196 NM_019060 ENSG00000169509 CRCT1 C1orf42|NICE-1|NICE1 cysteine rich C-terminal 1 protein-coding 276-466 chr8 135604598 135604795 + 2 NA intron (NM_006558, intron 6 of 8) L1M4|LINE|L1 147240 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 219-307 chr6 40212831 40213028 + 2 NA Intergenic Intergenic 143077 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 310-88 chr11 106025573 106025790 + 2 NA Intergenic L1MA9|LINE|L1 -3394 NM_001318747 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 135-4 chr1 157918993 157919079 + 2 NA Intergenic Intergenic -6931 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 118-18 chr12 86262621 86262723 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -5373 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 260-456 chr9 71326170 71326382 + 2 NA intron (NM_001366143, intron 1 of 25) MIR3|SINE|MIR 120695 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 604-178 chr9 135743605 135744115 + 2 NA intron (NM_020822, intron 2 of 30) intron (NM_020822, intron 2 of 30) 41675 NM_020822 57582 Hs.104950 NM_020822 ENSG00000107147 KCNT1 EIEE14|ENFL5|KCa4.1|SLACK|Slo2.2|bA100C15.2 potassium sodium-activated channel subfamily T member 1 protein-coding 312-225 chr2 34202408 34202670 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 135313 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 690-78 chr4 39437993 39438467 + 2 NA intron (NM_175737, intron 3 of 4) L2b|LINE|L2 20718 NM_000661 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 615-70 chr2 213857282 213857712 + 2 NA intron (NR_047660, intron 9 of 14) Tigger1|DNA|TcMar-Tigger 99430 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 239-412 chr8 109107320 109107491 + 2 NA intron (NM_003301, intron 2 of 2) MIR|SINE|MIR 20777 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 365-44 chr10 39333687 39333888 + 2 NA Intergenic ALR/Alpha|Satellite|centr 637191 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 237-226 chr3 1301811 1302033 + 2 NA intron (NM_001349359, intron 6 of 20) intron (NM_001349359, intron 6 of 20) 208898 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 440-185 chr4 169213529 169213850 + 2 NA intron (NM_020870, intron 2 of 11) L1MC1|LINE|L1 57267 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 1043-10 chr8 122413154 122413794 + 2 NA TTS (NR_131202) TTS (NR_131202) 155170 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 353-239 chr2 31542477 31542669 + 2 NA intron (NM_000348, intron 1 of 4) L1MB3|LINE|L1 38365 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 346-254 chr2 132707420 132707616 + 2 NA intron (NM_207481, intron 17 of 17) L1M1|LINE|L1 -35992 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 418-183 chr4 59030057 59030400 + 2 NA intron (NR_133942, intron 1 of 1) L1MC5a|LINE|L1 16655 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 343-249 chr2 80702643 80702948 + 2 NA Intergenic Intergenic 389416 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 529-48 chr12 58612846 58613253 + 2 NA intron (NR_120452, intron 2 of 7) L2a|LINE|L2 21347 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 325-355 chr3 105915773 105915945 + 2 NA Intergenic Intergenic -46458 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 162-121 chr7 54001505 54001656 + 2 NA Intergenic Intergenic -189649 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 424-89 chr16 51850141 51850518 + 2 NA Intergenic Intergenic 87810 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 489-16 chr1 188565995 188566400 + 2 NA Intergenic Intergenic 1122569 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 561-47 chr12 39998316 39998723 + 2 NA intron (NM_052885, intron 3 of 9) THE1B-int|LTR|ERVL-MaLR 107562 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 415-92 chr16 80894913 80895271 + 2 NA Intergenic Intergenic -2496 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 232-325 chr6 52736278 52736479 + 2 NA Intergenic ERVL47-int|LTR|ERVL 8781 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 488-64 chr12 118626979 118627316 + 2 NA Intergenic Intergenic 134532 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 346-418 chr6 47828906 47829079 + 2 NA Intergenic Intergenic 41924 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 380-91 chr12 32498221 32498509 + 2 NA intron (NM_001304481, intron 1 of 16) MER119|DNA|hAT-Charlie -3678 NM_001304484 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 205-136 chr2 50082140 50082297 + 2 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -108015 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 225-198 chr3 34634176 34634363 + 2 NA Intergenic L1MC1|LINE|L1 759754 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 279-267 chr3 104950001 104950218 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -416604 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 271-80 chr11 108429406 108429642 + 2 NA intron (NM_001351110, intron 2 of 8) L1MB3|LINE|L1 38005 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 468-316 chr8 105966750 105967166 + 2 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 93545 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 532-192 chr4 98062681 98063058 + 2 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 80607 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 272-49 chr10 63715750 63715938 + 2 NA Intergenic Intergenic -193954 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 526-86 chr15 98411733 98412134 + 2 NA intron (NR_146567, intron 1 of 2) L2|LINE|L2 9065 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 239-357 chr6 101898103 101898314 + 2 NA intron (NM_001166247, intron 11 of 16) intron (NM_001166247, intron 11 of 16) 499223 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 460-107 chr17 14821199 14821556 + 2 NA Intergenic Intergenic -193428 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 384-232 chr3 95568991 95569234 + 2 NA Intergenic L1M2|LINE|L1 114081 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 341-400 chr4 133501821 133502139 + 2 NA Intergenic Intergenic 352686 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 423-111 chr18 44408929 44409310 + 2 NA intron (NR_110792, intron 2 of 4) L1M4b|LINE|L1 122578 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 228-74 chr12 72017795 72017967 + 2 NA intron (NM_173353, intron 8 of 10) intron (NM_173353, intron 8 of 10) 79036 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 274-117 chr14 39940082 39940243 + 2 NA Intergenic Intergenic -507662 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 273-72 chr11 24081320 24081473 + 2 NA Intergenic Intergenic -415657 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 497-56 chr12 58124056 58124483 + 2 NA Intergenic Intergenic 36377 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 381-290 chr4 190179263 190179530 + 2 NA intron (NR_137167, intron 2 of 5) BSR/Beta|Satellite|Satellite 5622 NM_001363820 100288687 Hs.728749 NM_001205218 ENSG00000260596 DUX4 DUX4L double homeobox 4 protein-coding 195-218 chr6 146414230 146414376 + 2 NA intron (NM_001278067, intron 7 of 7) L1ME2|LINE|L1 -129530 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 553-122 chr2 107225391 107225886 + 2 NA intron (NR_049853, intron 2 of 3) MSTA|LTR|ERVL-MaLR 123887 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 156-33 chr14 87645938 87646083 + 2 NA intron (NR_146551, intron 1 of 2) intron (NR_146551, intron 1 of 2) 9284 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 331-530 chr8 83962476 83962701 + 2 NA Intergenic FRAM|SINE|Alu -220199 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 523-192 chr3 189905864 189906200 + 2 NA Intergenic Intergenic 76110 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 228-228 chr3 178626860 178627019 + 2 NA intron (NM_001278911, intron 1 of 4) (TAACT)n|Simple_repeat|Simple_repeat 68089 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 265-302 chr5 42605586 42605818 + 2 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 39838 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 359-449 chr7 49938786 49938977 + 2 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 154365 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 417-72 chr14 26851373 26851699 + 2 NA Intergenic L1ME3A|LINE|L1 -21597 NR_110041 101927081 Hs.97955 NR_110041 ENSG00000257612 MIR4307HG - MIR4307 host gene ncRNA 425-222 chr5 16012020 16012295 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 76975 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 288-414 chr7 84309655 84309915 + 2 NA Intergenic L2a|LINE|L2 -114996 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 318-382 chr4 19806262 19806467 + 2 NA Intergenic Intergenic -445541 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 160-65 chr3 68759727 68759843 + 2 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 172762 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 348-345 chr4 32333094 32333323 + 2 NA Intergenic L1ME3C|LINE|L1 -17830 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 640-131 chr8 35310275 35310724 + 2 NA intron (NM_080872, intron 1 of 16) AluSz|SINE|Alu 75024 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 459-196 chr3 121067491 121067914 + 2 NA intron (NR_145517, intron 5 of 8) L1MEg|LINE|L1 18062 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 353-458 chr6 78042821 78043083 + 2 NA Intergenic L1MD|LINE|L1 389913 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 218-282 chr6 12064386 12064576 + 2 NA intron (NM_002114, intron 2 of 8) intron (NM_002114, intron 2 of 8) 52169 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 136-62 chr3 90496933 90497039 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1389365 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 331-127 chr12 125752965 125753159 + 2 NA Intergenic Intergenic 130610 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 211-125 chr19 28113403 28113554 + 2 NA Intergenic Intergenic -319538 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 372-432 chr6 60651576 60651784 + 2 NA Intergenic MER107|DNA|hAT-Charlie -922450 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 289-39 chr1 237026629 237026842 + 2 NA Intergenic CR1_Mam|LINE|CR1 -15449 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 247-23 chr1 194341381 194341555 + 2 NA Intergenic Intergenic 1036723 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 258-417 chr9 5888316 5888512 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -2475 NM_005511 2315 Hs.154069 NM_005511 ENSG00000120215 MLANA MART-1|MART1 melan-A protein-coding 220-350 chr7 106513740 106513898 + 2 NA Intergenic MIRb|SINE|MIR 147339 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 572-114 chr3 131870821 131871260 + 2 NA intron (NM_130808, intron 2 of 15) L3b|LINE|CR1 114891 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 655-60 chr2 104453756 104454163 + 2 NA intron (NR_015399, intron 1 of 3) MER8|DNA|TcMar-Tigger 19612 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 459-280 chr7 62946180 62946559 + 2 NA Intergenic ALR/Alpha|Satellite|centr 357687 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 786-4 chr1 218613043 218613608 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 103230 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 327-378 chr4 168118812 168119110 + 2 NA intron (NM_007193, intron 1 of 11) intron (NM_007193, intron 1 of 11) 26424 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 231-227 chr3 67691676 67691840 + 2 NA intron (NR_109992, intron 3 of 6) L2a|LINE|L2 37061 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 575-116 chr3 57444971 57445332 + 2 NA intron (NM_001366028, intron 28 of 73) intron (NM_001366028, intron 28 of 73) 99193 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 144-65 chr4 45470037 45470165 + 2 NA Intergenic L2|LINE|L2 653953 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 299-332 chr4 89775166 89775363 + 2 NA intron (NM_001146054, intron 4 of 5) intron (NM_001146054, intron 4 of 5) -61137 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 253-86 chr11 112726717 112726916 + 2 NA Intergenic LTR16B2|LTR|ERVL -171014 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 330-283 chr2 113018683 113018870 + 2 NA Intergenic L2a|LINE|L2 13317 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 395-275 chr5 100803213 100803475 + 2 NA Intergenic Intergenic 13221 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 409-263 chr6 68010472 68010829 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -44701 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 278-61 chr11 121678282 121678505 + 2 NA Intergenic L1ME2|LINE|L1 226079 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 249-261 chr3 71934681 71934903 + 2 NA Intergenic L2c|LINE|L2 -149644 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 479-250 chr8 107428372 107428843 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 69311 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 287-92 chr11 79321857 79322127 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 80117 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 290-294 chr3 150446817 150447049 + 2 NA intron (NR_130136, intron 3 of 4) intron (NR_130136, intron 3 of 4) 38635 NR_130136 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 237-413 chrX 137850288 137850466 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 284250 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 312-351 chr3 184092384 184092553 + 2 NA Intergenic L1M3|LINE|L1 -4596 NM_198313 285242 Hs.449179 NM_182589 ENSG00000186038 HTR3E 5-HT3-E|5-HT3E|5-HT3c1 5-hydroxytryptamine receptor 3E protein-coding 310-98 chr12 14289081 14289259 + 2 NA Intergenic Intergenic -76462 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 286-135 chr15 62615474 62615638 + 2 NA Intergenic Intergenic 29625 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 307-112 chr12 124055723 124055891 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 82592 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 173-70 chr2 100167160 100167294 + 2 NA Intergenic L1ME3A|LINE|L1 -24637 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 341-428 chr5 29535820 29536000 + 2 NA Intergenic L1PA17|LINE|L1 -139934 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 203-263 chrY 11297933 11298059 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat 1123594 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 484-212 chr5 51326405 51326693 + 2 NA Intergenic Intergenic 56783 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 453-94 chr17 71522167 71522521 + 2 NA Intergenic Intergenic -320165 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 303-158 chr16 51195617 51195803 + 2 NA intron (NR_039672, intron 5 of 6) intron (NR_039672, intron 5 of 6) -44438 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 268-93 chr12 65592952 65593127 + 2 NA intron (NR_120434, intron 2 of 4) L3|LINE|CR1 -9830 NR_146529 105369807 NR_146529 ENSG00000256268 LINC02454 - long intergenic non-protein coding RNA 2454 ncRNA 285-15 chr1 118981450 118981641 + 2 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 6798 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 280-148 chr16 49528991 49529205 + 2 NA intron (NM_001271620, intron 5 of 7) intron (NM_001271620, intron 5 of 7) -10513 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 431-98 chr16 47948556 47948792 + 2 NA Intergenic MER113A|DNA|hAT-Charlie -17015 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 262-189 chr19 57795809 57796011 + 2 NA Intergenic Intergenic 19003 NM_024762 79818 Hs.560727 NM_024762 ENSG00000178935 ZNF552 - zinc finger protein 552 protein-coding 241-284 chr4 186871992 186872155 + 2 NA Intergenic L1ME3|LINE|L1 -148217 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 457-106 chr2 4303871 4304161 + 2 NA Intergenic LTR16A|LTR|ERVL 329855 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 405-355 chrX 64833670 64834010 + 2 NA Intergenic L1PA13|LINE|L1 142610 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 287-41 chr10 8038204 8038394 + 2 NA Intergenic Intergenic 14192 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 214-209 chr3 79267143 79267293 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -144509 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 253-329 chr5 56417975 56418163 + 2 NA Intergenic Intergenic 63700 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 399-39 chr10 84337146 84337492 + 2 NA intron (NM_018999, intron 1 of 10) L2a|LINE|L2 8730 NM_001351290 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 316-541 chr8 55251051 55251231 + 2 NA intron (NM_052898, intron 1 of 2) (TAGGTA)n|Simple_repeat|Simple_repeat 149113 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 889-20 chr2 139753960 139754708 + 2 NA Intergenic L1MA1|LINE|L1 832351 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 234-3 chr1 37043431 37043589 + 2 NA Intergenic Intergenic -8995 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 344-53 chr10 50358347 50358523 + 2 NA intron (NM_147156, intron 6 of 10) AluSz6|SINE|Alu -109825 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 281-402 chr7 643076 643281 + 2 NA intron (NM_001164760, intron 4 of 10) intron (NM_001164760, intron 4 of 10) 39780 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 293-203 chr2 132374269 132374529 + 2 NA Intergenic LTR24|LTR|ERV1 21732 NR_135203 339742 Hs.98178 NR_135203 FAM201B - family with sequence similarity 201 member B ncRNA 237-145 chr18 4962273 4962457 + 2 NA Intergenic L1MA2|LINE|L1 -118817 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 452-297 chrX 26736582 26736899 + 2 NA Intergenic L1PA15|LINE|L1 178403 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 274-106 chr12 128695000 128695202 + 2 NA intron (NM_001136103, intron 6 of 8) MER3|DNA|hAT-Charlie 128857 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 461-48 chr11 44847107 44847407 + 2 NA intron (NM_130783, intron 2 of 9) MIR|SINE|MIR 102903 NM_001318384 9537 Hs.554791 NM_006034 ENSG00000175274 TP53I11 PIG11 tumor protein p53 inducible protein 11 protein-coding 336-520 chr7 67655963 67656267 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 320139 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 395-356 chr9 90010631 90010962 + 2 NA Intergenic Intergenic 12739 NR_036253 100422963 NR_036253 ENSG00000263967 MIR4290 - microRNA 4290 ncRNA 445-280 chr8 131456814 131457168 + 2 NA Intergenic Intergenic -416082 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 519-162 chr4 59037257 59037572 + 2 NA intron (NR_133942, intron 1 of 1) intron (NR_133942, intron 1 of 1) 23841 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 448-163 chr3 83795022 83795351 + 2 NA Intergenic Intergenic 1074389 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 597-122 chr6 134070739 134071315 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -18403 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 314-70 chr10 76269271 76269512 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 486630 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 153-83 chr6 52032145 52032261 + 2 NA intron (NM_138694, intron 29 of 66) intron (NM_138694, intron 29 of 66) 55410 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 385-414 chrX 52286884 52287208 + 2 NA Intergenic L1MA4|LINE|L1 49596 NR_107055 102466880 NR_107055 ENSG00000275335 MIR8088 hsa-mir-8088 microRNA 8088 ncRNA 272-273 chr3 97605133 97605348 + 2 NA intron (NM_001080448, intron 12 of 17) intron (NM_001080448, intron 12 of 17) -159281 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 363-244 chr2 217138169 217138398 + 2 NA Intergenic L1PA16|LINE|L1 -144450 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 550-196 chr6 42321900 42322376 + 2 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) -104277 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 311-536 chr8 142793158 142793332 + 2 NA Intergenic Intergenic -6706 NM_003695 8581 Hs.415762 NM_003695 ENSG00000167656 LY6D E48|Ly-6D lymphocyte antigen 6 family member D protein-coding 355-207 chr18 2366918 2367160 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 204466 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 212-234 chr4 71379953 71380162 + 2 NA intron (NM_003759, intron 3 of 22) intron (NM_003759, intron 3 of 22) 41004 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 352-308 chr3 5441974 5442228 + 2 NA Intergenic Intergenic -191846 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 292-60 chr10 110152877 110153083 + 2 NA Intergenic Intergenic -54625 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 185-212 chr9 79093690 79093808 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 51917 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 552-70 chr15 35614784 35615321 + 2 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) 68857 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 277-398 chr8 26863831 26864100 + 2 NA intron (NR_136343, intron 1 of 2) intron (NR_136343, intron 1 of 2) 1690 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 407-207 chr3 148852983 148853355 + 2 NA intron (NM_001871, intron 9 of 10) intron (NM_001871, intron 9 of 10) -12127 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 276-28 chr1 189100836 189101081 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 1375052 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 289-65 chr10 80905875 80906052 + 2 NA Intergenic Intergenic 256166 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 392-311 chr7 113318102 113318409 + 2 NA Intergenic Intergenic -199673 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 331-362 chr3 111798773 111799095 + 2 NA intron (NM_001185106, intron 4 of 4) THE1C|LTR|ERVL-MaLR -60246 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 347-522 chr8 117302369 117302569 + 2 NA Intergenic Intergenic 167474 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 289-40 chr1 237915194 237915352 + 2 NA intron (NR_027247, intron 8 of 11) intron (NR_027247, intron 8 of 11) -24351 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 172-103 chr5 46416249 46416391 + 2 NA Intergenic ALR/Alpha|Satellite|centr -719940 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 325-304 chr20 15554140 15554366 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 357413 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 292-265 chr21 31498286 31498460 + 2 NA intron (NM_003253, intron 1 of 28) intron (NM_003253, intron 1 of 28) 60714 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 219-385 chrX 69884145 69884308 + 2 NA intron (NM_001005609, intron 1 of 7) intron (NM_001005609, intron 1 of 7) -138631 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 347-492 chr8 32187782 32188052 + 2 NA intron (NM_013962, intron 1 of 4) Zaphod3|DNA|hAT-Tip100 161699 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 276-370 chr5 42829092 42829276 + 2 NA Intergenic Intergenic -17108 NM_001085486 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 274-64 chr11 25870217 25870369 + 2 NA Intergenic Intergenic -318830 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 278-243 chr2 221687810 221688045 + 2 NA Intergenic L1MEd|LINE|L1 -113725 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 428-226 chr5 29521897 29522167 + 2 NA Intergenic Intergenic -126056 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 434-120 chr18 37976761 37976991 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 319741 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 560-62 chr16 82862394 82862759 + 2 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 89257 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 449-213 chr5 99259427 99259758 + 2 NA Intergenic L1PA15|LINE|L1 -274398 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 198-54 chr12 62847577 62847688 + 2 NA intron (NM_020700, intron 1 of 9) intron (NM_020700, intron 1 of 9) 87518 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 397-170 chr2 146801637 146801965 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 214744 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 525-266 chr8 111432796 111433229 + 2 NA intron (NR_146282, intron 2 of 3) L1M5|LINE|L1 56373 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 551-218 chr8 102993208 102993716 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -27621 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 189-214 chr8 114681503 114681619 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 986452 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 350-335 chr4 5669756 5669981 + 2 NA intron (NM_147127, intron 7 of 21) intron (NM_147127, intron 7 of 21) 38691 NM_147127 132884 Hs.87306 NM_147127 ENSG00000173040 EVC2 LBN|WAD EvC ciliary complex subunit 2 protein-coding 344-461 chr7 57415017 57415213 + 2 NA Intergenic Intergenic 10090 NR_036102 100422939 NR_036102 ENSG00000266168 MIR3147 mir-3147 microRNA 3147 ncRNA 234-391 chr8 107316853 107317073 + 2 NA intron (NM_001199859, intron 4 of 8) MIR|SINE|MIR 19552 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 229-293 chr5 27261441 27261582 + 2 NA Intergenic Intergenic -210781 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 320-154 chr14 62622790 62623040 + 2 NA Intergenic AluSq2|SINE|Alu 422543 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 439-67 chr12 30281585 30282013 + 2 NA Intergenic Intergenic 395445 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 355-161 chr14 88328814 88329138 + 2 NA Intergenic Intergenic -2064 NM_021161 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 453-304 chr9 89544874 89545196 + 2 NA Intergenic Intergenic -47062 NM_001371194 550-49 chr11 113354638 113355093 + 2 NA intron (NM_001318533, intron 16 of 21) L1PA13|LINE|L1 -32914 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 445-261 chr8 6562093 6562532 + 2 NA intron (NM_001147, intron 1 of 8) intron (NM_001147, intron 1 of 8) 933 NM_001118887 285 Hs.583870 NM_001147 ENSG00000091879 ANGPT2 AGPT2|ANG2 angiopoietin 2 protein-coding 188-167 chr5 81528796 81528934 + 2 NA intron (NM_012446, intron 4 of 16) L1M5|LINE|L1 -134731 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 122-18 chr14 85668702 85668815 + 2 NA Intergenic Intergenic 135409 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 344 chr1 5088450 5088735 + 2 NA Intergenic L1PA17|LINE|L1 433983 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 546-107 chr2 80832813 80833196 + 2 NA Intergenic Intergenic 519625 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 323-22 chr1 106901690 106901870 + 2 NA Intergenic Intergenic 83541 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 302-33 chr1 240740552 240740712 + 2 NA Intergenic Intergenic -128477 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 449-137 chr2 230384164 230384463 + 2 NA intron (NM_001352892, intron 8 of 18) intron (NM_001352892, intron 8 of 18) -31843 NM_001206702 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 559-174 chr7 82275682 82276078 + 2 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 167897 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 302-138 chr14 95675836 95676034 + 2 NA Intergenic Intergenic -10491 NM_004918 9623 Hs.632346 NM_004918 ENSG00000213231 TCL1B SYN-1|TML1 T cell leukemia/lymphoma 1B protein-coding 301-398 chr6 100017584 100017838 + 2 NA intron (NR_038384, intron 2 of 2) L1MA3|LINE|L1 -23473 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 260-128 chr14 60025996 60026234 + 2 NA intron (NR_075071, intron 27 of 32) intron (NR_075071, intron 27 of 32) -65796 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 259-304 chr5 9973751 9973991 + 2 NA Intergenic Intergenic -70047 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 345-462 chr6 42558381 42558652 + 2 NA Intergenic AluJb|SINE|Alu -5506 NM_001363705 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 212-213 chr3 83420218 83420382 + 2 NA Intergenic L1MC3|LINE|L1 1434158 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 441-274 chr9 16622812 16623176 + 2 NA intron (NM_001317940, intron 2 of 5) intron (NM_001317940, intron 2 of 5) -103820 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 287-293 chr4 140915425 140915696 + 2 NA intron (NM_020724, intron 5 of 6) intron (NM_020724, intron 5 of 6) -159175 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 300-17 chr1 158378950 158379183 + 2 NA Intergenic L1MA4A|LINE|L1 20400 NM_001004475 128360 Hs.553588 NM_001004475 ENSG00000186306 OR10T2 OR1-3 olfactory receptor family 10 subfamily T member 2 protein-coding 269-44 chr10 33213609 33213813 + 2 NA exon (NM_001330068, exon 9 of 16) exon (NM_001330068, exon 9 of 16) -96904 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 328-631 chrX 77115506 77115802 + 2 NA Intergenic L1M1|LINE|L1 -101122 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 235-359 chr8 91931816 91931996 + 2 NA Intergenic L1MB5|LINE|L1 85774 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 484-188 chr4 37666464 37666844 + 2 NA intron (NM_001085400, intron 1 of 6) intron (NM_001085400, intron 1 of 6) 19722 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 127 chr1 4954601 4954715 + 2 NA Intergenic L1MEd|LINE|L1 300049 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 344-526 chr9 129090909 129091221 + 2 NA TTS (NM_020438) TTS (NM_020438) 9954 NM_001135917 57171 Hs.21701 NM_020438 ENSG00000167130 DOLPP1 LSFR2 dolichyldiphosphatase 1 protein-coding 869-11 chr11 13827012 13827716 + 2 NA intron (NR_149108, intron 3 of 3) MLT1F1|LTR|ERVL-MaLR 42978 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 305-542 chr8 95667333 95667545 + 2 NA intron (NR_038205, intron 2 of 2) MLT1G1|LTR|ERVL-MaLR 280909 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 565-89 chr2 180095915 180096292 + 2 NA Intergenic L1PREC2|LINE|L1 -88806 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 346-11 chr1 91308703 91308951 + 2 NA intron (NM_001017975, intron 30 of 38) L1MB7|LINE|L1 96010 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 144-5 chr1 81266863 81266988 + 2 NA Intergenic Intergenic -39267 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 369-12 chr1 105139911 105140219 + 2 NA Intergenic L2a|LINE|L2 478870 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 250-268 chr3 26619532 26619712 + 2 NA Intergenic Intergenic -3184 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 414-153 chr2 79446758 79447008 + 2 NA Intergenic Intergenic 53961 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 335-312 chr21 21891554 21891755 + 2 NA Intergenic L1M2|LINE|L1 144669 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 292-397 chr7 8539609 8539854 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 106122 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 302-36 chr10 11766924 11767190 + 2 NA Intergenic L1MC5a|LINE|L1 24675 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 236-3 chr1 20021086 20021279 + 2 NA Intergenic L1MA5|LINE|L1 -40748 NM_001161727 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 217-172 chr2 61972932 61973109 + 2 NA intron (NM_152516, intron 1 of 2) L1ME3C|LINE|L1 67378 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 369-199 chr2 79046958 79047243 + 2 NA Intergenic L1MA2|LINE|L1 21398 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 351-280 chr22 22076094 22076384 + 2 NA Intergenic MER4B|LTR|ERV1 -32305 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 256-258 chr3 68277801 68277984 + 2 NA intron (NM_001252216, intron 2 of 4) L1ME3G|LINE|L1 -222745 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 342-321 chr3 89915401 89915579 + 2 NA Intergenic Intergenic 807869 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 398-233 chr4 18608120 18608403 + 2 NA Intergenic Intergenic -586386 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 260-364 chr5 152582702 152582895 + 2 NA Intergenic L1PA15|LINE|L1 -177519 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 199-240 chr8 102285762 102285931 + 2 NA intron (NM_001282873, intron 38 of 58) intron (NM_001282873, intron 38 of 58) 46395 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 535-67 chr13 77679794 77680224 + 2 NA Intergenic L1PB4|LINE|L1 -17206 NM_001310140 100129307 NM_001310140 LOC100129307 - putative UPF0607 protein ENSP00000383144 protein-coding 248-111 chr14 51329950 51330119 + 2 NA Intergenic MIRb|SINE|MIR -1649 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 584-77 chr2 81211810 81212312 + 2 NA Intergenic Intergenic 254885 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 358-406 chr6 66055204 66055513 + 2 NA Intergenic Intergenic 267479 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 305-37 chr1 188971901 188972202 + 2 NA Intergenic MER67A|LTR|ERV1 1503959 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 439-228 chr5 30506503 30506925 + 2 NA Intergenic Intergenic 626154 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 181-49 chr16 51759829 51759995 + 2 NA Intergenic Intergenic -2607 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 470-240 chr6 118783272 118783636 + 2 NA TTS (NR_037662) TTS (NR_037662) 746 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 241-346 chr6 160597996 160598193 + 2 NA intron (NM_005577, intron 20 of 38) L1MEc|LINE|L1 66165 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 214-35 chr10 33980101 33980266 + 2 NA Intergenic Intergenic -207503 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 314-216 chr16 77884890 77885118 + 2 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) 96440 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 262-318 chr4 77260631 77260805 + 2 NA Intergenic Intergenic 103511 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 345-231 chr18 80002872 80003153 + 2 NA intron (NM_001305564, intron 1 of 2) intron (NM_001305564, intron 1 of 2) -14449 NM_001305557 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 200-34 chr10 83670596 83670729 + 2 NA Intergenic L1MC3|LINE|L1 6427 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 273-4 chr1 25645030 25645222 + 2 NA intron (NM_020379, intron 1 of 11) intron (NM_020379, intron 1 of 11) 27658 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 270-441 chrX 58306415 58306620 + 2 NA Intergenic ALR/Alpha|Satellite|centr -395884 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 544-34 chr10 90502684 90503132 + 2 NA intron (NR_110657, intron 2 of 6) MLT1K|LTR|ERVL-MaLR 37897 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 462-259 chr7 24805964 24806305 + 2 NA intron (NR_104111, intron 20 of 21) AluSz6|SINE|Alu -48195 NM_001127454 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 298-456 chr8 55285490 55285685 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 169734 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 370-18 chr1 163540128 163540336 + 2 NA Intergenic MER61A|LTR|ERV1 -117041 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 369-26 chr10 8608650 8608964 + 2 NA Intergenic L1ME1|LINE|L1 -14416 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 328-414 chr4 105988368 105988561 + 2 NA Intergenic Intergenic 34014 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 223-303 chr6 114705922 114706086 + 2 NA Intergenic Intergenic -643127 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 386-383 chr9 117660498 117660851 + 2 NA Intergenic Intergenic 12068 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 357-421 chr7 111799343 111799680 + 2 NA intron (NM_001363540, intron 30 of 52) HUERS-P3-int|LTR|ERV1 -8994 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 545-83 chr16 48701893 48702375 + 2 NA Intergenic L1PA16|LINE|L1 -91954 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 221-284 chr7 63982019 63982195 + 2 NA Intergenic Intergenic -16699 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 538-7 chr1 78057575 78057974 + 2 NA intron (NM_017655, intron 1 of 5) L2a|LINE|L2 11808 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 429-208 chr4 69990453 69990801 + 2 NA Intergenic Intergenic -5339 NM_003154 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 346-174 chr16 22982416 22982632 + 2 NA Intergenic L1MEd|LINE|L1 166746 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 1026-7 chr14 44531581 44532442 + 2 NA intron (NR_135257, intron 2 of 2) intron (NR_135257, intron 2 of 2) 24602 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 171-89 chr4 48449869 48450014 + 2 NA Intergenic HAL1|LINE|L1 -33402 NM_152679 201780 Hs.132591 NM_152679 ENSG00000145248 SLC10A4 P4 solute carrier family 10 member 4 protein-coding 516-116 chr2 23335984 23336338 + 2 NA Intergenic Intergenic -49018 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 183-84 chr20 60457892 60458028 + 2 NA Intergenic Intergenic 15016 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 248-223 chr20 49017680 49017830 + 2 NA intron (NM_006420, intron 33 of 38) intron (NM_006420, intron 33 of 38) 28301 NR_110625 102723483 Hs.209000 NR_110624 ENSG00000227431 CSE1L-AS1 - CSE1L antisense RNA 1 ncRNA 538-126 chr2 137711855 137712220 + 2 NA Intergenic L1M1|LINE|L1 215895 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 366-399 chr7 7146035 7146293 + 2 NA Intergenic LTR54|LTR|ERV1 -36451 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 242-273 chr4 95892405 95892621 + 2 NA Intergenic Intergenic 52420 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 709-101 chrX 88542177 88542599 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -204837 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 356-85 chr11 81603642 81603868 + 2 NA Intergenic Intergenic 287081 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 296-230 chr2 101584348 101584611 + 2 NA Intergenic L1MA4|LINE|L1 -109367 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 414-351 chr9 72632636 72632936 + 2 NA intron (NM_138691, intron 4 of 23) L1M6|LINE|L1 110985 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 415-215 chr5 46353082 46353318 + 2 NA Intergenic ALR/Alpha|Satellite|centr -656820 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 232-4 chr1 41836860 41837030 + 2 NA intron (NM_024503, intron 1 of 8) L2a|LINE|L2 81977 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 516-210 chr5 77955076 77955443 + 2 NA intron (NR_105012, intron 1 of 1) intron (NR_105012, intron 1 of 1) -2988 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 281-153 chr16 83012496 83012738 + 2 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) -22319 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 554-148 chr3 141799663 141800030 + 2 NA intron (NM_139209, intron 2 of 3) intron (NM_139209, intron 2 of 3) 21645 NM_139209 131890 Hs.680654 NM_139209 ENSG00000114124 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 470-124 chr2 43795647 43795991 + 2 NA TTS (NM_015522) TTS (NM_015522) 21780 NM_016008 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 714-58 chr5 39029420 39029957 + 2 NA intron (NM_001285439, intron 2 of 38) MIRb|SINE|MIR 44711 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 608-2 chr1 31458118 31458511 + 2 NA Intergenic LTR10E|LTR|ERV1 -41771 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LDC1P LINC01225 leucine decarboxylase 1, pseudogene pseudo 317-77 chr11 27869388 27869668 + 2 NA Intergenic MIRb|SINE|MIR -147498 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 159-84 chr7 10634210 10634316 + 2 NA intron (NR_147499, intron 1 of 2) LTR107_Mam|LTR|LTR -68413 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 271-182 chr18 75561900 75562118 + 2 NA Intergenic Intergenic -134306 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 327-414 chr5 117421627 117421840 + 2 NA intron (NR_046089, intron 1 of 5) L1MB3|LINE|L1 6221 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 277-448 chr9 88075164 88075421 + 2 NA intron (NR_135138, intron 1 of 1) intron (NR_135138, intron 1 of 1) 2608 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 235-261 chr4 82133826 82134004 + 2 NA Intergenic L1MC5a|LINE|L1 240076 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 491-103 chr18 53623607 53624075 + 2 NA Intergenic L1MC4|LINE|L1 -42782 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 281-206 chr2 58651419 58651660 + 2 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 130786 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 300-105 chr14 37960011 37960204 + 2 NA Intergenic Intergenic -57983 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 335-516 chr7 131200591 131200864 + 2 NA intron (NM_001145354, intron 2 of 18) intron (NM_001145354, intron 2 of 18) 90633 NM_001145354 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 308-392 chr5 97644454 97644707 + 2 NA intron (NR_105028, intron 2 of 3) L2c|LINE|L2 139884 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 473-178 chr3 106770861 106771305 + 2 NA Intergenic Intergenic 469555 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 299-367 chr5 58017897 58018154 + 2 NA Intergenic Intergenic 104316 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 239-51 chr11 7165011 7165139 + 2 NA Intergenic L1MC5a|LINE|L1 -69691 NR_031683 100313774 NR_031683 ENSG00000221703 MIR302E MIRN302E microRNA 302e ncRNA 480-69 chr14 38479503 38479916 + 2 NA Intergenic L1MA3|LINE|L1 -223616 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 143-63 chr4 158942865 158942941 + 2 NA intron (NM_152543, intron 3 of 4) L2c|LINE|L2 92326 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 230-15 chr1 97064014 97064219 + 2 NA Intergenic Intergenic -31807 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 428-4 chr1 108102076 108102417 + 2 NA Intergenic Intergenic 90589 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 341-492 chr7 43121553 43121883 + 2 NA intron (NR_135295, intron 2 of 6) intron (NR_135295, intron 2 of 6) 3822 NR_135295 100127950 Hs.666610 NR_135295 ENSG00000181211 HECW1-IT1 - HECW1 intronic transcript 1 ncRNA 116-50 chr8 127279762 127279849 + 2 NA intron (NR_117099, intron 1 of 3) LTR82B|LTR|ERVL 35168 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 511-135 chr2 180614295 180614679 + 2 NA Intergenic Intergenic -77617 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 126-38 chr20 60342652 60342732 + 2 NA Intergenic Intergenic 34218 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 288-16 chr1 94389805 94390055 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -28447 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 872-19 chr14 95806085 95806676 + 2 NA Intergenic Intergenic -70012 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 538-12 chr1 107628510 107628968 + 2 NA intron (NM_006113, intron 20 of 26) intron (NM_006113, intron 20 of 26) 59760 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 311-320 chr21 44384528 44384728 + 2 NA intron (NM_003307, intron 9 of 31) MSTD|LTR|ERVL-MaLR 31027 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 487-32 chr10 5672548 5672843 + 2 NA Intergenic L1M5|LINE|L1 -6100 NM_024701 79754 Hs.445899 NM_024701 ENSG00000196372 ASB13 - ankyrin repeat and SOCS box containing 13 protein-coding 271-71 chr11 42824941 42825122 + 2 NA Intergenic Intergenic 444338 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 271-74 chr11 75463579 75463772 + 2 NA intron (NM_030792, intron 3 of 16) intron (NM_030792, intron 3 of 16) -11348 NM_001351167 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 346-505 chr8 132115945 132116269 + 2 NA Intergenic LTR16E2|LTR|ERVL -10842 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 186-67 chr18 46763709 46763863 + 2 NA Intergenic Intergenic -6733 NM_001307986 29906 Hs.465025 NM_013305 ENSG00000101638 ST8SIA5 SIAT8-E|SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 232-44 chr10 110854132 110854309 + 2 NA Intergenic Intergenic 16684 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 396-121 chr16 17988502 17988861 + 2 NA Intergenic Intergenic 343981 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 308-181 chr17 34731812 34732077 + 2 NA Intergenic Intergenic 151195 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 412-163 chr2 107466446 107466656 + 2 NA Intergenic Intergenic -62868 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 208-29 chr10 93162457 93162633 + 2 NA Intergenic L1M4a1|LINE|L1 88652 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 400-80 chr13 105157874 105158229 + 2 NA Intergenic L1M5|LINE|L1 -307816 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 358-76 chr11 95144426 95144648 + 2 NA Intergenic Intergenic -6002 NR_110303 101929295 Hs.735838 NR_110303 ENSG00000245552 LOC101929295 - uncharacterized LOC101929295 ncRNA 412-23 chr10 31199039 31199392 + 2 NA intron (NR_134478, intron 1 of 2) Tigger2a|DNA|TcMar-Tigger 11332 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 510-170 chr20 55697710 55698084 + 2 NA Intergenic Intergenic -270700 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 411-45 chr10 125586191 125586482 + 2 NA intron (NM_001318133, intron 3 of 3) intron (NM_001318133, intron 3 of 3) 11965 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 331-400 chr4 170568183 170568400 + 2 NA Intergenic Intergenic 175444 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 390-399 chr8 132231590 132231886 + 2 NA intron (NM_004519, intron 1 of 14) MLT1B|LTR|ERVL-MaLR -126473 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 507-40 chr10 110273847 110274213 + 2 NA intron (NM_005962, intron 3 of 5) intron (NM_005962, intron 3 of 5) 30890 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 264-432 chr8 133323965 133324170 + 2 NA Intergenic MIR|SINE|MIR -26763 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 348-187 chr17 65336518 65336842 + 2 NA Intergenic L1MC3|LINE|L1 -120861 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 207-111 chr18 8671649 8671847 + 2 NA Intergenic MER65-int|LTR|ERV1 35873 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 312-276 chr2 230184572 230184756 + 2 NA intron (NM_080424, intron 11 of 18) intron (NM_080424, intron 11 of 18) 35320 NM_004510 3431 Hs.145150 NM_004509 ENSG00000135899 SP110 IFI41|IFI75|IPR1|VODI SP110 nuclear body protein protein-coding 329-43 chr10 16702659 16702936 + 2 NA intron (NM_152724, intron 6 of 7) MSTA-int|LTR|ERVL-MaLR 114627 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 268-312 chr5 68161989 68162156 + 2 NA Intergenic HAL1|LINE|L1 -27804 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 369-303 chr4 132911361 132911577 + 2 NA Intergenic Intergenic 237647 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 738-17 chr13 53693099 53693690 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -122025 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 256-237 chr20 59681645 59681820 + 2 NA intron (NM_001199506, intron 1 of 12) AluSp|SINE|Alu 5071 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 264-208 chr2 105382538 105382737 + 2 NA intron (NM_001318899, intron 3 of 7) intron (NM_001318899, intron 3 of 7) 16414 NM_201555 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 466-215 chr5 148029601 148029980 + 2 NA Intergenic L1MEc|LINE|L1 -34182 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 444-142 chr20 42443016 42443393 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -242279 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 140-20 chr12 54950417 54950519 + 2 NA intron (NM_001351149, intron 11 of 11) intron (NM_001351149, intron 11 of 11) 23264 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 315-129 chr14 50379909 50380141 + 2 NA intron (NM_001282236, intron 2 of 8) ERVL-B4-int|LTR|ERVL 16856 NM_001367065 8814 Hs.280881 NM_004196 ENSG00000100490 CDKL1 KKIALRE|P42 cyclin dependent kinase like 1 protein-coding 356-155 chr14 81798822 81799002 + 2 NA Intergenic Intergenic -55774 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 238-157 chr2 11878803 11878967 + 2 NA Intergenic MIR|SINE|MIR -41899 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 248-434 chr9 84201030 84201238 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 137691 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 256-244 chr22 31793390 31793578 + 2 NA intron (NR_146296, intron 12 of 42) intron (NR_146296, intron 12 of 42) 39461 NM_001369901 9681 Hs.435022 NM_014662 ENSG00000100150 DEPDC5 DEP.5|FFEVF|FFEVF1 DEP domain containing 5 protein-coding 240-391 chr7 15313527 15313732 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 248386 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 357-63 chr11 46269438 46269708 + 2 NA Intergenic Intergenic -8089 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 242-35 chr10 53232000 53232164 + 2 NA Intergenic Intergenic -460382 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 231-68 chr12 38439975 38440191 + 2 NA Intergenic MIR|SINE|MIR 123309 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 371-116 chr14 101251281 101251483 + 2 NA Intergenic Intergenic 130526 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 255-180 chr19 56407204 56407402 + 2 NA intron (NM_001159860, intron 2 of 4) intron (NM_001159860, intron 2 of 4) 2971 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 335-108 chr11 110102751 110103044 + 2 NA intron (NM_033390, intron 1 of 5) Tigger1|DNA|TcMar-Tigger 9505 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 419-309 chr9 74736648 74737045 + 2 NA intron (NM_017662, intron 36 of 38) intron (NM_017662, intron 36 of 38) 121312 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 345-244 chr2 30721086 30721342 + 2 NA Intergenic Intergenic 86232 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 296-81 chr11 114195993 114196247 + 2 NA intron (NM_006006, intron 4 of 6) intron (NM_006006, intron 4 of 6) -99693 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 342-324 chr3 95426034 95426304 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 257024 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 356-362 chr4 54355257 54355498 + 2 NA intron (NR_147160, intron 1 of 1) intron (NR_147160, intron 1 of 1) 22485 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 571-2 chr1 87205561 87205983 + 2 NA Intergenic Intergenic -6897 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 386-198 chr2 222776921 222777140 + 2 NA Intergenic LTR33|LTR|ERVL -84006 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 334-46 chr10 26533471 26533751 + 2 NA intron (NM_019043, intron 9 of 14) intron (NM_019043, intron 9 of 14) 45696 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 549-110 chr2 101522135 101522503 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -47207 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 503-239 chr5 156210721 156211076 + 2 NA Intergenic L1MA8|LINE|L1 -115859 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 505-166 chr2 212070566 212070887 + 2 NA intron (NM_001042599, intron 2 of 26) L1M4|LINE|L1 355634 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 468-90 chr15 59976572 59977022 + 2 NA Intergenic LTR33A_|LTR|ERVL -27514 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 274-323 chr5 146805023 146805285 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 73631 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 234-323 chr5 132273882 132274076 + 2 NA TTS (NM_003687) TTS (NM_003687) 16283 NM_003687 8572 Hs.424312 NM_003687 ENSG00000131435 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 293-180 chr2 22686067 22686249 + 2 NA Intergenic MLT2C1|LTR|ERVL 149679 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 371-331 chr6 22841942 22842283 + 2 NA Intergenic L1PB4|LINE|L1 -124188 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 254-443 chr9 85473053 85473238 + 2 NA Intergenic Intergenic 268884 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 121-77 chrX 54878203 54878302 + 2 NA Intergenic Intergenic -42311 NM_001271183 7216 Hs.633653 NM_016157 ENSG00000067445 TRO MAGE-d3|MAGED3 trophinin protein-coding 389-189 chr2 167477960 167478219 + 2 NA Intergenic Intergenic 290717 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 564-10 chr10 8248882 8249350 + 2 NA Intergenic L1ME4a|LINE|L1 19189 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 136-80 chr7 8297745 8297844 + 2 NA intron (NR_125740, intron 3 of 5) intron (NR_125740, intron 3 of 5) -35182 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 375-416 chr8 116373428 116373708 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -48509 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 263-238 chr21 23149783 23149992 + 2 NA Intergenic MIRb|SINE|MIR 70603 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 445-12 chr1 215175111 215175475 + 2 NA intron (NM_001017424, intron 5 of 6) MLT1C|LTR|ERVL-MaLR 92556 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 242-379 chr7 108344684 108344861 + 2 NA intron (NM_001371131, intron 2 of 33) intron (NM_001371131, intron 2 of 33) -16246 NM_001371176 363-454 chr8 126848122 126848401 + 2 NA Intergenic Intergenic -164893 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 236-335 chr7 86042088 86042297 + 2 NA Intergenic L1ME3A|LINE|L1 -601717 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 331-82 chr11 23381186 23381461 + 2 NA Intergenic Intergenic 37867 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 210-148 chr2 204016684 204016853 + 2 NA Intergenic Intergenic 80020 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 483-124 chr2 133907570 133907976 + 2 NA Intergenic L1MEf|LINE|L1 -212162 NM_001371457 357-100 chr13 112006405 112006695 + 2 NA intron (NR_120392, intron 1 of 3) L1MB3|LINE|L1 34240 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 373-33 chr1 210076740 210077030 + 2 NA intron (NM_153262, intron 4 of 7) MSTA|LTR|ERVL-MaLR 138668 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 474-32 chr10 53133671 53133997 + 2 NA Intergenic MER110|LTR|ERV1 -362134 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 163-90 chr3 181936699 181936837 + 2 NA Intergenic Intergenic -15596 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 462-210 chr4 92378049 92378436 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 73843 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 192-195 chr7 83923842 83923993 + 2 NA Intergenic L1PA16|LINE|L1 270872 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 221-157 chr2 209281615 209281785 + 2 NA Intergenic Intergenic -142347 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 693-12 chr10 24327046 24327482 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 51579 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 652-114 chr8 52804047 52804472 + 2 NA Intergenic L1ME3G|LINE|L1 -89793 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 435-83 chr14 85827220 85827620 + 2 NA Intergenic Intergenic -107258 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 388-318 chr6 167100271 167100535 + 2 NA Intergenic LTR62|LTR|ERVL -11404 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 290-290 chr3 114290149 114290428 + 2 NA Intergenic MER31A|LTR|ERV1 -3740 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 368-294 chr3 82826979 82827245 + 2 NA Intergenic MLT2B3|LTR|ERVL 840970 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 249-404 chr8 41578818 41578989 + 2 NA promoter-TSS (NR_125824) promoter-TSS (NR_125824) 387 NM_001363197 137964 Hs.355753 NM_178819 ENSG00000158669 GPAT4 1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7 glycerol-3-phosphate acyltransferase 4 protein-coding 254-303 chr5 27716570 27716770 + 2 NA Intergenic L1MB8|LINE|L1 244378 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 332-10 chr1 78557447 78557691 + 2 NA Intergenic L1PA17|LINE|L1 -62879 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 406-260 chr6 77774768 77775058 + 2 NA intron (NM_001282136, intron 3 of 4) MLT1D|LTR|ERVL-MaLR 121874 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 326-231 chr2 19757066 19757266 + 2 NA Intergenic Intergenic -111688 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 373-11 chr1 54441542 54441741 + 2 NA Intergenic L2c|LINE|L2 -35247 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 413-208 chr4 30683945 30684315 + 2 NA Intergenic Intergenic -36239 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 380-310 chr5 97499184 97499408 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -5400 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 570-192 chr8 36947014 36947465 + 2 NA Intergenic L1MA5|LINE|L1 162865 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 344-496 chr8 116141522 116141858 + 2 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 183369 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 687-19 chr10 104625363 104625913 + 2 NA Intergenic L1MD1|LINE|L1 -15652 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 288-63 chr11 21690222 21690466 + 2 NA Intergenic Intergenic -502741 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 201-52 chr11 127218322 127218487 + 2 NA Intergenic MIRb|SINE|MIR -52666 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 518-260 chr6 94970551 94971039 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 606656 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 425-119 chr18 71468064 71468314 + 2 NA Intergenic L1MA9|LINE|L1 110767 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 383-271 chr4 27253374 27253603 + 2 NA intron (NR_125921, intron 3 of 5) intron (NR_125921, intron 3 of 5) 36009 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 220-384 chr8 137523236 137523408 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -109734 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 357-385 chr6 62182599 62182922 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 103465 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 321-230 chr17 41144998 41145282 + 2 NA intron (NM_001277332, intron 2 of 5) (CCTT)n|Simple_repeat|Simple_repeat -4653 NM_030976 81871 Hs.307014 NM_030976 ENSG00000198090 KRTAP4-6 KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 keratin associated protein 4-6 protein-coding 593-140 chr7 104546513 104546945 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 218073 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 313-30 chr1 215839164 215839403 + 2 NA intron (NM_206933, intron 46 of 71) intron (NM_206933, intron 46 of 71) -233182 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 322-87 chr11 43779577 43779829 + 2 NA intron (NM_016142, intron 3 of 10) intron (NM_016142, intron 3 of 10) 98965 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 310-130 chr14 46780320 46780481 + 2 NA Intergenic MIRb|SINE|MIR -128619 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 363-180 chr17 61605644 61605885 + 2 NA Intergenic AluJb|SINE|Alu -14545 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 442-149 chr2 192615535 192615826 + 2 NA Intergenic L1MEg|LINE|L1 -134165 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 328-408 chr4 85217662 85217865 + 2 NA Intergenic L1MA2|LINE|L1 250279 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 160-34 chr18 6944859 6944994 + 2 NA intron (NM_005559, intron 61 of 62) L1MEc|LINE|L1 -9751 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 328-610 chr9 102190128 102190405 + 2 NA Intergenic L1MC3|LINE|L1 -329371 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 235-18 chr1 164336457 164336662 + 2 NA Intergenic L2a|LINE|L2 -222801 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 508-233 chr8 46095670 46096008 + 2 NA Intergenic ALR/Alpha|Satellite|centr 521804 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 253-306 chr4 129378189 129378407 + 2 NA Intergenic Intergenic 282146 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 520-201 chr3 196786056 196786395 + 2 NA intron (NM_002577, intron 2 of 14) AluSg4|SINE|Alu 46368 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 329-463 chr5 101598329 101598525 + 2 NA Intergenic L1MA9|LINE|L1 -695145 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 403-327 chr9 103845021 103845359 + 2 NA Intergenic L1MCc|LINE|L1 -154519 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 399-133 chr2 6847196 6847477 + 2 NA TTS (NM_207315) TTS (NM_207315) -6872 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 503-261 chr7 49974271 49974604 + 2 NA intron (NM_001159878, intron 7 of 7) L1MC4a|LINE|L1 118809 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 687-88 chr5 23225182 23225849 + 2 NA Intergenic LTR9B|LTR|ERV1 -282094 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 356-160 chr15 35942143 35942354 + 2 NA Intergenic Intergenic 15392 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 201-23 chr10 20047178 20047336 + 2 NA intron (NM_032812, intron 3 of 13) intron (NM_032812, intron 3 of 13) 230825 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 288-348 chr5 149766624 149766787 + 2 NA intron (NM_001172698, intron 1 of 10) intron (NM_001172698, intron 1 of 10) -5235 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 350-522 chr8 104014400 104014732 + 2 NA exon (NM_001348501, exon 15 of 25) exon (NM_001348501, exon 15 of 25) 195346 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 261-126 chr16 13291708 13291877 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 390194 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 285-452 chr9 27621273 27621525 + 2 NA Intergenic L1ME3G|LINE|L1 -47533 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 665-57 chr22 45065538 45066135 + 2 NA Intergenic Intergenic -55831 NM_001135862 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 367-484 chrUn_GL000216v2 76885 77198 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 287-314 chr5 55491504 55491666 + 2 NA intron (NR_103485, intron 1 of 6) intron (NR_103485, intron 1 of 6) 17341 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 363-202 chr2 15467374 15467701 + 2 NA intron (NR_052013, intron 18 of 50) intron (NR_052013, intron 18 of 50) 93797 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 204-258 chr6 141042726 141042860 + 2 NA Intergenic L1MC4|LINE|L1 358979 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 313-374 chr4 14216884 14217153 + 2 NA Intergenic MIRb|SINE|MIR 105050 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 283-166 chr16 72551672 72551881 + 2 NA intron (NR_159371, intron 1 of 5) Cheshire|DNA|hAT-Charlie 113194 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 257-17 chr1 118868242 118868411 + 2 NA Intergenic MIR|SINE|MIR 120017 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 266-357 chr6 39809486 39809717 + 2 NA intron (NM_015345, intron 1 of 24) MER103C|DNA|hAT-Charlie 16604 NM_015345 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 298-195 chr2 4035980 4036150 + 2 NA Intergenic Intergenic 61904 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 290-188 chr19 23038880 23039050 + 2 NA Intergenic AluSx1|SINE|Alu -15268 NR_110746 101929164 Hs.557249 NR_110746 ENSG00000261558 LINC01859 - long intergenic non-protein coding RNA 1859 ncRNA 422-7 chr1 62893969 62894281 + 2 NA Intergenic Intergenic 109993 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 406-155 chr2 127765029 127765418 + 2 NA exon (NM_018383, exon 5 of 22) exon (NM_018383, exon 5 of 22) 45948 NM_001006623 55339 Hs.554831 NM_018383 ENSG00000136709 WDR33 NET14|WDC146 WD repeat domain 33 protein-coding 621-110 chr6 50689807 50690374 + 2 NA Intergenic AluSx1|SINE|Alu -23454 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 165-66 chr20 49927317 49927450 + 2 NA intron (NR_134564, intron 2 of 2) L1M5|LINE|L1 -9014 NM_018683 55905 Hs.144949 NM_018683 ENSG00000124226 RNF114 PSORS12|ZNF313 ring finger protein 114 protein-coding 416-53 chr10 95821061 95821388 + 2 NA intron (NM_001312654, intron 2 of 9) intron (NM_001312654, intron 2 of 9) 65061 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 560-196 chr9 96072787 96073190 + 2 NA intron (NR_033838, intron 1 of 8) intron (NR_033838, intron 1 of 8) 7149 NR_033838 158435 Hs.652615 NR_033838 LOC158435 - uncharacterized LOC158435 ncRNA 375-361 chr6 138410669 138410975 + 2 NA intron (NM_014320, intron 3 of 3) intron (NM_014320, intron 3 of 3) 6599 NM_014320 23593 Hs.486589 NM_014320 ENSG00000051620 HEBP2 C6ORF34B|C6orf34|PP23|SOUL heme binding protein 2 protein-coding 401-186 chr20 21409325 21409653 + 2 NA Intergenic L1ME3G|LINE|L1 -11963 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 482-151 chr20 61085779 61086160 + 2 NA Intergenic MIRc|SINE|MIR 6905 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 187-57 chr15 80252521 80252644 + 2 NA promoter-TSS (NM_001352888) promoter-TSS (NM_001352888) -369 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 348-519 chr8 76465712 76465962 + 2 NA intron (NR_105006, intron 2 of 5) intron (NR_105006, intron 2 of 5) 59183 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 239-187 chr2 137543027 137543198 + 2 NA intron (NM_001316349, intron 15 of 27) MLT1D|LTR|ERVL-MaLR 384820 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 305-420 chr5 8947606 8947801 + 2 NA Intergenic Intergenic 106192 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 151-30 chr17 19677448 19677588 + 2 NA TTS (NM_001256663) TTS (NM_001256663) 28767 NM_001369139 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 242-39 chr10 65486092 65486310 + 2 NA Intergenic L1M5|LINE|L1 -85224 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 150-83 chr4 99316740 99316840 + 2 NA intron (NM_001286650, intron 4 of 9) intron (NM_001286650, intron 4 of 9) 4611 NM_000668 125 Hs.4 NM_000668 ENSG00000196616 ADH1B ADH2|HEL-S-117 alcohol dehydrogenase 1B (class I), beta polypeptide protein-coding 193-167 chr5 45071749 45071931 + 2 NA Intergenic Intergenic 262893 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 134-89 chr8 127888435 127888536 + 2 NA intron (NR_003367, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 60238 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 472-271 chr6 61234388 61234640 + 2 NA Intergenic L1MA1|LINE|L1 -339616 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 374-331 chr6 23002786 23003106 + 2 NA Intergenic Intergenic -285022 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 373-292 chr4 91220597 91220852 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 985693 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 204-16 chr1 228794016 228794157 + 2 NA Intergenic Intergenic 58607 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 355-163 chr14 102817626 102817974 + 2 NA intron (NM_001199427, intron 1 of 7) Charlie16a|DNA|hAT-Charlie 40321 NM_145726 7187 Hs.510528 NM_003300 ENSG00000131323 TRAF3 CAP-1|CAP1|CD40bp|CRAF1|IIAE5|LAP1|RNF118 TNF receptor associated factor 3 protein-coding 339-351 chr3 27272085 27272401 + 2 NA intron (NM_152534, intron 23 of 38) intron (NM_152534, intron 23 of 38) -55720 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 193-111 chr2 114891779 114891940 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -58311 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 329-314 chr2 228352319 228352503 + 2 NA Intergenic Intergenic -170724 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 214-272 chr5 178718033 178718216 + 2 NA intron (NM_005649, intron 4 of 4) intron (NM_005649, intron 4 of 4) 12535 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 214-228 chr4 4374802 4374941 + 2 NA Intergenic L1MB7|LINE|L1 -11385 NM_001040101 27065 Hs.518595 NM_014392 ENSG00000168824 NSG1 D4S234|D4S234E|NEEP21|P21 neuronal vesicle trafficking associated 1 protein-coding 250-368 chr5 174253971 174254211 + 2 NA Intergenic L1ME3D|LINE|L1 -82263 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 303-271 chr22 26775530 26775830 + 2 NA intron (NR_110543, intron 3 of 5) intron (NR_110543, intron 3 of 5) -84531 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 473-52 chr12 13302476 13302796 + 2 NA Intergenic Intergenic 74109 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 221-66 chr12 108495433 108495584 + 2 NA Intergenic LTR16A2|LTR|ERVL -19769 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 326-91 chr11 15568121 15568365 + 2 NA Intergenic Intergenic -75642 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 264-130 chr14 59602442 59602646 + 2 NA intron (NM_021136, intron 8 of 8) intron (NM_021136, intron 8 of 8) 7595 NM_001363702 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 300-403 chr6 131271085 131271330 + 2 NA intron (NM_138633, intron 2 of 2) L1ME1|LINE|L1 20803 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 205-272 chr8 77310894 77311024 + 2 NA Intergenic Intergenic -139738 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 576-117 chr4 59688431 59688802 + 2 NA Intergenic Intergenic 675043 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 267-158 chr18 54885617 54885773 + 2 NA intron (NM_004163, intron 4 of 5) L2a|LINE|L2 57218 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 322-458 chr6 55935008 55935304 + 2 NA Intergenic L2|LINE|L2 -59566 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 199 chr1 29398146 29398314 + 2 NA Intergenic MIRb|SINE|MIR -48116 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 284-435 chr9 27788779 27788959 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -215003 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 277-309 chr5 25661825 25661984 + 2 NA Intergenic Intergenic 470951 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 507-60 chr11 97354092 97354468 + 2 NA Intergenic Intergenic 845855 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 892-20 chr2 107610401 107611015 + 2 NA Intergenic MER57A1|LTR|ERV1 81289 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 292-475 chrX 45614605 45614766 + 2 NA Intergenic L1MA9|LINE|L1 109297 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 500-173 chr21 23511548 23511989 + 2 NA Intergenic Intergenic -126933 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 297-60 chr10 126383578 126383792 + 2 NA intron (NM_001288974, intron 1 of 18) HAL1|LINE|L1 4792 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 347-388 chr5 39938965 39939198 + 2 NA Intergenic L1MEd|LINE|L1 -113210 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 296-488 chr8 131790787 131791015 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -113192 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 616-179 chr9 34304749 34305253 + 2 NA intron (NM_194313, intron 3 of 12) intron (NM_194313, intron 3 of 12) 24267 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 291-470 chr8 126944736 126945007 + 2 NA Intergenic Intergenic -68283 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 194-132 chr3 156270741 156270913 + 2 NA intron (NM_003471, intron 1 of 13) L1MA2|LINE|L1 -20160 NM_172159 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 507-194 chr5 20102568 20103017 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -114592 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 381-60 chr10 94880554 94880798 + 2 NA Intergenic L1M2|LINE|L1 -57982 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 399-331 chr9 87775459 87775808 + 2 NA intron (NR_027917, intron 3 of 4) intron (NR_027917, intron 3 of 4) 2718 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 303-175 chr18 42317487 42317788 + 2 NA intron (NR_046457, intron 4 of 6) L1MDa|LINE|L1 130969 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 458-131 chr2 74336415 74336765 + 2 NA intron (NM_133478, intron 3 of 30) MIR|SINE|MIR 6826 NM_133478 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 348-321 chr3 130474689 130474873 + 2 NA intron (NM_001278298, intron 40 of 40) AluJb|SINE|Alu -85553 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 308-349 chr4 97936775 97936987 + 2 NA intron (NM_174952, intron 8 of 10) L1PA10|LINE|L1 206595 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 327-473 chr7 126950123 126950377 + 2 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) 107934 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 266-438 chr8 125591765 125592001 + 2 NA Intergenic Intergenic 159674 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 262-121 chr14 46686009 46686190 + 2 NA Intergenic L1MA4A|LINE|L1 -34318 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 229-107 chr14 37127923 37128084 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -44023 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 210-244 chr6 56076872 56077013 + 2 NA intron (NM_030820, intron 18 of 29) L1MEd|LINE|L1 14720 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 277-187 chr2 49360960 49361188 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -206547 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 214-60 chr11 15590017 15590189 + 2 NA Intergenic MIRc|SINE|MIR -53782 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 193-47 chr12 100792590 100792776 + 2 NA Intergenic Intergenic -2093 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 681-52 chr3 158200801 158201457 + 2 NA intron (NM_001271834, intron 3 of 8) L1MEf|LINE|L1 91040 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 565-62 chr17 69823886 69824329 + 2 NA intron (NR_109972, intron 3 of 4) L2|LINE|L2 -137600 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 526-68 chr13 84859600 84860009 + 2 NA Intergenic Intergenic 76150 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 367-435 chr8 6190898 6191197 + 2 NA Intergenic Intergenic 215501 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 297-279 chr22 26814528 26814781 + 2 NA Intergenic Intergenic -45557 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 322-198 chr17 32703229 32703480 + 2 NA intron (NM_015194, intron 16 of 21) intron (NM_015194, intron 16 of 21) 173770 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 546-237 chr8 92520843 92521294 + 2 NA Intergenic L3|LINE|CR1 134426 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 324-274 chr2 114237510 114237800 + 2 NA Intergenic Intergenic -204986 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 311-311 chr20 59382699 59382859 + 2 NA Intergenic Intergenic 82168 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 405-297 chr7 34744781 34745170 + 2 NA intron (NR_015356, intron 2 of 4) MER2|DNA|TcMar-Tigger 13297 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 204-198 chr3 91541416 91541615 + 2 NA Intergenic ALR/Alpha|Satellite|centr 2432566 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 373-146 chr16 72998727 72999084 + 2 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 49223 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 520-16 chr1 162941175 162941556 + 2 NA Intergenic Intergenic -72550 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 330-309 chr2 207375358 207375587 + 2 NA Intergenic L1MA4|LINE|L1 -106048 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 659-82 chr4 67382608 67383142 + 2 NA Intergenic L1PBa|LINE|L1 39125 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 209-50 chr11 4918054 4918214 + 2 NA Intergenic MIRb|SINE|MIR -2471 NM_001005238 81282 Hs.542302 NM_001005238 ENSG00000176893 OR51G2 OR11-28 olfactory receptor family 51 subfamily G member 2 protein-coding 421-312 chr8 136031707 136032074 + 2 NA Intergenic Intergenic -498908 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 649-108 chr8 65691278 65691775 + 2 NA intron (NM_001145839, intron 3 of 6) AluSz6|SINE|Alu 21653 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 314-101 chr11 78758816 78759097 + 2 NA intron (NM_001098816, intron 18 of 33) MIR|SINE|MIR -184092 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 268-332 chr6 15289037 15289179 + 2 NA intron (NM_001267040, intron 1 of 17) intron (NM_001267040, intron 1 of 17) 40253 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 302-311 chr4 19287656 19287867 + 2 NA Intergenic Intergenic -964144 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 421-87 chr14 86406564 86406858 + 2 NA Intergenic Intergenic 472033 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 227-165 chr2 56699140 56699358 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -513479 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 517-131 chr2 77179989 77180342 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 194200 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 249-297 chr4 61334954 61335182 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 132896 NM_001371342 401-139 chr18 77357320 77357697 + 2 NA Intergenic Intergenic 107660 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 275-266 chr4 63513659 63513864 + 2 NA Intergenic MLT2F|LTR|ERVL 895689 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 467-142 chr2 167015849 167016257 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 124902 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 311-394 chr4 186357788 186357971 + 2 NA intron (NR_033900, intron 1 of 3) MLT1D|LTR|ERVL-MaLR 91690 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 325-389 chr4 51898982 51899184 + 2 NA intron (NM_001040402, intron 7 of 10) L1MC4|LINE|L1 55504 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 470-238 chr6 63674262 63674497 + 2 NA intron (NM_001370350, intron 2 of 14) intron (NM_001370350, intron 2 of 14) 27853 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 326-348 chr3 110044324 110044645 + 2 NA Intergenic Intergenic 441656 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 370-492 chrX 98183292 98183591 + 2 NA Intergenic MLT2B3|LTR|ERVL -618906 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 758-21 chr13 112048648 112049352 + 2 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -18149 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 383-395 chr8 127767274 127767504 + 2 NA Intergenic AluSg|SINE|Alu -27144 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 490-267 chr7 62954616 62955086 + 2 NA Intergenic ALR/Alpha|Satellite|centr 349205 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 648-106 chr5 18859025 18859495 + 2 NA Intergenic Intergenic 1027012 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 212-265 chr5 109655969 109656126 + 2 NA Intergenic Intergenic -33319 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 364-484 chrX 94230800 94231132 + 2 NA Intergenic L1PA13|LINE|L1 556760 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 231-56 chr11 37744472 37744679 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -194026 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 218-313 chr8 6240636 6240807 + 2 NA Intergenic L1ME3D|LINE|L1 165827 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 267-45 chr10 41769770 41769939 + 2 NA Intergenic ALR/Alpha|Satellite|centr 598191 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 358-137 chr15 87894472 87894701 + 2 NA intron (NM_001012338, intron 17 of 19) intron (NM_001012338, intron 17 of 19) 51682 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 461-25 chr10 20063214 20063499 + 2 NA intron (NM_032812, intron 3 of 13) intron (NM_032812, intron 3 of 13) 246924 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 338-192 chr16 52123866 52124062 + 2 NA Intergenic Intergenic 38683 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 277-333 chr5 113672875 113673078 + 2 NA Intergenic Intergenic 159282 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 477-222 chr4 58836866 58837202 + 2 NA Intergenic Intergenic -147248 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 343-37 chr1 236988440 236988647 + 2 NA Intergenic L1ME3D|LINE|L1 15898 NM_001276687 645745 Hs.632513 NM_001039954 ENSG00000244020 MT1HL1 MT1P2 metallothionein 1H like 1 protein-coding 430-217 chr4 85871617 85871984 + 2 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) 43863 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 390-230 chr3 19782860 19783090 + 2 NA Intergenic L1PBa|LINE|L1 151242 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 426-215 chr4 175509495 175509872 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 277993 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 227-48 chr10 85093833 85094032 + 2 NA Intergenic L1MA7|LINE|L1 104973 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 302-461 chr8 112818177 112818368 + 2 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 174779 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 354-393 chr6 8579286 8579514 + 2 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) -72809 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 495-249 chr8 69125431 69125863 + 2 NA Intergenic L1PB1|LINE|L1 -21457 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 263-459 chrX 65083108 65083342 + 2 NA Intergenic L1MA1|LINE|L1 -48484 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 233-197 chr2 216761111 216761315 + 2 NA Intergenic Intergenic -65664 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 171-68 chr21 16466001 16466103 + 2 NA intron (NR_136550, intron 1 of 3) (ATAA)n|Simple_repeat|Simple_repeat 45757 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 689-78 chr5 30808302 30808783 + 2 NA Intergenic Intergenic -385144 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 515-212 chr5 85600321 85600736 + 2 NA Intergenic L1MC1|LINE|L1 -681916 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 304-521 chr8 101834691 101834869 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -43811 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 339-481 chr5 174833711 174834027 + 2 NA Intergenic Intergenic 82135 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 296-383 chr5 131248584 131248872 + 2 NA Intergenic L1ME3F|LINE|L1 -15281 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 533-62 chr15 69830964 69831322 + 2 NA Intergenic Intergenic -4091 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 274-258 chr3 51176675 51176870 + 2 NA intron (NM_004947, intron 12 of 52) intron (NM_004947, intron 12 of 52) -208519 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 232-408 chrX 38089999 38090196 + 2 NA intron (NM_001163334, intron 6 of 16) intron (NM_001163334, intron 6 of 16) 56563 NM_001163334 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 379-49 chr10 116474581 116474934 + 2 NA intron (NM_001011709, intron 10 of 11) L1PA13|LINE|L1 46910 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 301-291 chr3 156594811 156595042 + 2 NA Intergenic L2b|LINE|L2 -39726 NM_001308197 6747 Hs.518346 NM_007107 ENSG00000114850 SSR3 TRAPG signal sequence receptor subunit 3 protein-coding 294-76 chr12 23399417 23399620 + 2 NA Intergenic Intergenic 185068 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 510-59 chr12 62918590 62918952 + 2 NA intron (NM_020700, intron 1 of 9) L1ME4a|LINE|L1 16379 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 270-401 chr8 118419053 118419218 + 2 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -201866 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 609-4 chr1 112914712 112915106 + 2 NA intron (NM_003051, intron 4 of 4).2 MER103C|DNA|hAT-Charlie -8441 NR_002796 246182 Hs.647691 NR_002796 AKR7A2P1 AFARP1 aldo-keto reductase family 7 member A2 pseudogene 1 pseudo 298-63 chr10 125307704 125307985 + 2 NA Intergenic L1MEj|LINE|L1 -146814 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 363-397 chr6 147188225 147188451 + 2 NA intron (NR_034115, intron 1 of 10) intron (NR_034115, intron 1 of 10) -16020 NM_001127715 134957 Hs.86320 NM_139244 ENSG00000164506 STXBP5 LGL3|LLGL3|Nbla04300 syntaxin binding protein 5 protein-coding 237-336 chr6 145139858 145140087 + 2 NA Intergenic Intergenic 546905 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 529-117 chr2 183403473 183403957 + 2 NA Intergenic L1PREC2|LINE|L1 279272 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 333-360 chr3 108714698 108714992 + 2 NA Intergenic Intergenic 42438 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 253-66 chr11 21328421 21328602 + 2 NA intron (NM_201551, intron 14 of 18) THE1C-int|LTR|ERVL-MaLR 658925 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 324-354 chr3 89802971 89803172 + 2 NA Intergenic Intergenic 695450 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 1070-10 chr18 1212982 1213633 + 2 NA Intergenic L1MA5A|LINE|L1 146322 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 239-84 chr13 23541618 23541826 + 2 NA Intergenic Intergenic -28648 NM_001204459 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 492-250 chr8 10528680 10529006 + 2 NA intron (NM_198464, intron 1 of 4) MLT1D|LTR|ERVL-MaLR 3311 NM_198464 203074 Hs.591394 NM_198464 ENSG00000184647 PRSS55 CT153|T-SP1|TSP1|UNQ9391 serine protease 55 protein-coding 250-241 chr20 44009172 44009382 + 2 NA intron (NM_001098797, intron 3 of 8) intron (NM_001098797, intron 3 of 8) 63381 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 311-219 chr18 69075719 69075930 + 2 NA Intergenic AluJb|SINE|Alu 277744 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 496-209 chr5 45817954 45818400 + 2 NA Intergenic L1MC3|LINE|L1 -121797 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 638-10 chr1 239966027 239966516 + 2 NA Intergenic Intergenic -41253 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 649-123 chr9 110899386 110899728 + 2 NA intron (NM_001351417, intron 5 of 5) intron (NM_001351417, intron 5 of 5) 137223 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 318-575 chr9 87164151 87164401 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 15632 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 673-98 chr5 66340395 66340803 + 2 NA Intergenic Intergenic -131153 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 232-10 chr1 99178600 99178809 + 2 NA Intergenic MIRb|SINE|MIR -85588 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 273-340 chr4 166437915 166438137 + 2 NA Intergenic L1MA9|LINE|L1 564789 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 525-157 chr3 45095950 45096342 + 2 NA intron (NM_022842, intron 4 of 8) intron (NM_022842, intron 4 of 8) 50232 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 407-26 chr10 19540131 19540439 + 2 NA intron (NM_001142308, intron 32 of 39) intron (NM_001142308, intron 32 of 39) 188265 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 252-280 chr3 143866115 143866341 + 2 NA Intergenic Intergenic -17760 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 196-94 chr16 55974194 55974314 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -18223 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 360-78 chr12 5248676 5248987 + 2 NA Intergenic Intergenic -5680 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 439-246 chr6 61543746 61544104 + 2 NA intron (NR_146870, intron 15 of 15) L1MA3|LINE|L1 -30205 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 239-404 chr8 84878980 84879193 + 2 NA intron (NM_001354323, intron 7 of 7) HAL1|LINE|L1 173159 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 334-310 chr20 22029844 22030104 + 2 NA Intergenic Intergenic -24116 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 162-110 chr6 67790783 67790933 + 2 NA Intergenic Intergenic -264493 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 583-71 chr18 172949 173411 + 2 NA intron (NM_001037334, intron 3 of 14) AluYm1|SINE|Alu 14623 NM_001037334 9097 Hs.464416 NM_005151 ENSG00000101557 USP14 TGT ubiquitin specific peptidase 14 protein-coding 399-196 chr22 37252293 37252606 + 2 NA Intergenic L1M5|LINE|L1 -8180 NM_002872 5880 Hs.517601 NM_002872 ENSG00000128340 RAC2 EN-7|Gx|HSPC022|p21-Rac2 Rac family small GTPase 2 protein-coding 381-421 chrX 155696325 155696568 + 2 NA intron (NM_001304990, intron 1 of 2) intron (NM_001304990, intron 1 of 2) -71289 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 489-69 chr13 106981886 106982305 + 2 NA Intergenic L2a|LINE|L2 328215 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 291-420 chr7 82825813 82826046 + 2 NA intron (NM_033026, intron 18 of 24) (TA)n|Simple_repeat|Simple_repeat 336955 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 309-195 chr16 86943649 86943829 + 2 NA Intergenic Intergenic -114045 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 346-208 chr18 7505023 7505341 + 2 NA Intergenic Intergenic -44176 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 329-430 chr4 179495321 179495532 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -1587490 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 326-405 chr5 43753905 43754107 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -150776 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 271-334 chr5 16224323 16224513 + 2 NA Intergenic Intergenic 44177 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 480-195 chr3 118050972 118051350 + 2 NA Intergenic L1MEf|LINE|L1 -360236 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 357-106 chr14 32584302 32584579 + 2 NA intron (NM_004274, intron 5 of 13) MER44B|DNA|TcMar-Tigger 255142 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 312-420 chr5 91164854 91165027 + 2 NA TTS (NM_032119) TTS (NM_032119) 149462 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 379-21 chr1 163869134 163869388 + 2 NA Intergenic L1MA8|LINE|L1 -446070 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 338-142 chr12 127638884 127639090 + 2 NA Intergenic Intergenic -2520 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 343-168 chr15 93292870 93293174 + 2 NA Intergenic L1MD|LINE|L1 86956 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 139-10 chr10 107369285 107369415 + 2 NA Intergenic L1ME3A|LINE|L1 -204644 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 200-193 chr4 94777526 94777663 + 2 NA intron (NM_001203, intron 1 of 12) MIR3|SINE|MIR 19639 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 345-381 chr4 47245878 47246058 + 2 NA intron (NM_000812, intron 4 of 8) L1PB1|LINE|L1 214401 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 246-425 chr8 135961920 135962147 + 2 NA Intergenic Intergenic 504577 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 340-348 chr3 2278525 2278743 + 2 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 39805 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 353-347 chr3 177656410 177656700 + 2 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -160310 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 318-133 chr12 20664190 20664376 + 2 NA intron (NM_000921, intron 15 of 15) intron (NM_000921, intron 15 of 15) -31072 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 378-60 chr10 71126284 71126562 + 2 NA Intergenic MIRb|SINE|MIR -86147 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 568-129 chr3 15896909 15897302 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 23334 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 399-94 chr14 72246198 72246503 + 2 NA intron (NM_001370288, intron 2 of 16) MER97c|DNA|hAT-Tip100 -270470 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 209-129 chr18 1758469 1758647 + 2 NA Intergenic L1MA7|LINE|L1 -398929 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 471-96 chr16 6872389 6872779 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 98775 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 290-51 chr10 66599366 66599540 + 2 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -326583 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 444-158 chr3 135477945 135478271 + 2 NA Intergenic L1M3c|LINE|L1 -487620 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 268-24 chr1 233967399 233967550 + 2 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) 62798 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 450-22 chr1 221092626 221092987 + 2 NA Intergenic AluY|SINE|Alu -212666 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 341-255 chr2 86645244 86645528 + 2 NA intron (NM_001198954, intron 2 of 7) intron (NM_001198954, intron 2 of 7) -21509 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 236-78 chr12 5759215 5759384 + 2 NA intron (NM_001278596, intron 10 of 25) L1MCc|LINE|L1 185960 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 181-39 chr13 103777926 103778055 + 2 NA Intergenic Intergenic 352790 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 303-59 chr10 123217570 123217825 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 63295 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 215-265 chr5 103864150 103864309 + 2 NA Intergenic Intergenic -301440 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 278-139 chr15 101566151 101566413 + 2 NA Intergenic Intergenic 48057 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 349-309 chr21 34665591 34665869 + 2 NA Intergenic L2a|LINE|L2 -3264 NM_001317009 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 236-241 chr3 160207296 160207482 + 2 NA promoter-TSS (NR_108088) promoter-TSS (NR_108088) -297 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 437-243 chr6 142461521 142461949 + 2 NA Intergenic Intergenic 159728 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 269-291 chr4 111029048 111029275 + 2 NA Intergenic L1MB5|LINE|L1 -168514 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 414-353 chr9 81781771 81782044 + 2 NA Intergenic (AAAG)n|Simple_repeat|Simple_repeat 92194 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 266-4 chr1 34384049 34384267 + 2 NA Intergenic L1MCb|LINE|L1 207251 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 432-189 chr3 167982494 167982765 + 2 NA Intergenic L1MA2|LINE|L1 86681 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 251-239 chr3 107934074 107934240 + 2 NA Intergenic L1MEg|LINE|L1 50952 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 136-55 chr20 57741249 57741362 + 2 NA Intergenic L1ME4a|LINE|L1 -29769 NM_199171 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 389-160 chr2 27914551 27914867 + 2 NA intron (NM_199193, intron 3 of 13) intron (NM_199193, intron 3 of 13) -23595 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 394-80 chr12 30100352 30100611 + 2 NA Intergenic L1ME1|LINE|L1 -315722 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 291-77 chr11 90736876 90737060 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) 132234 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 470-77 chr14 71993996 71994394 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 60668 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 417-21 chr1 233266500 233266826 + 2 NA intron (NM_014801, intron 1 of 33) intron (NM_014801, intron 1 of 33) 29062 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 197-137 chr3 95832924 95833071 + 2 NA Intergenic L1MA8|LINE|L1 -149804 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 434-83 chr14 70154109 70154424 + 2 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -32842 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 178-140 chr7 122781700 122781840 + 2 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) -78848 NM_198085 378925 Hs.675191 NM_198085 ENSG00000235631 RNF148 - ring finger protein 148 protein-coding 262-403 chr7 77497036 77497206 + 2 NA Intergenic Intergenic -40174 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 314-397 chr3 174073164 174073417 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -152494 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 310-479 chr7 52608542 52608805 + 2 NA Intergenic MER45R|DNA|hAT-Tip100 -426960 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 403-197 chr3 53415461 53415784 + 2 NA Intergenic L1M5|LINE|L1 -68079 NM_001290205 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 514-11 chr1 111249019 111249448 + 2 NA Intergenic Intergenic 19497 NM_001025199 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 547-43 chr11 114658371 114658791 + 2 NA Intergenic L1ME1|LINE|L1 -19946 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 678-44 chr18 27730279 27730680 + 2 NA Intergenic Intergenic 306162 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 383-398 chr8 131075245 131075563 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -34495 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 321-121 chr12 10120362 10120582 + 2 NA intron (NM_197948, intron 4 of 4) intron (NM_197948, intron 4 of 4) 9727 NR_125336 64581 Hs.143929 NM_022570 ENSG00000172243 CLEC7A BGR|CANDF4|CD369|CLECSF12|DECTIN1|SCARE2 C-type lectin domain containing 7A protein-coding 568-173 chr6 107755123 107755645 + 2 NA intron (NM_001286408, intron 1 of 6) intron (NM_001286408, intron 1 of 6) -23234 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 303-236 chr2 198675968 198676187 + 2 NA Intergenic L1M5|LINE|L1 -300980 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 334-404 chr4 173286929 173287120 + 2 NA intron (NM_017423, intron 2 of 11) LTR25-int|LTR|ERV1 18864 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 289-209 chr2 17399592 17399794 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR 118747 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 339-294 chr2 191993503 191993807 + 2 NA intron (NM_001305134, intron 7 of 9) intron (NM_001305134, intron 7 of 9) -146567 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 546-105 chr2 75514201 75514678 + 2 NA intron (NM_032181, intron 3 of 3) L2c|LINE|L2 -9629 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 697-8 chr10 82802492 82802857 + 2 NA intron (NR_163252, intron 3 of 8) AluJb|SINE|Alu -569754 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 331-451 chr6 42176787 42177097 + 2 NA intron (NM_000409, intron 3 of 5) intron (NM_000409, intron 3 of 5) 18014 NM_002098 2979 Hs.446529 NM_002098 ENSG00000112599 GUCA1B GCAP 2|GCAP2|GUCA2|RP48 guanylate cyclase activator 1B protein-coding 459-329 chr9 80954645 80955051 + 2 NA Intergenic Intergenic 734687 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 230-142 chr16 79459066 79459226 + 2 NA Intergenic MIR|SINE|MIR 141591 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 277-180 chr2 27709161 27709365 + 2 NA intron (NR_135200, intron 1 of 1) L1MC4|LINE|L1 6469 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 361-245 chr2 194720070 194720270 + 2 NA Intergenic L1MC2|LINE|L1 -10425 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 305-554 chr8 141092189 141092422 + 2 NA Intergenic HAL1M8|LINE|L1 -36284 NR_148197 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 758-74 chr8 79714904 79715310 + 2 NA Intergenic Intergenic 51368 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 383-166 chr18 65902362 65902627 + 2 NA Intergenic L1M4a2|LINE|L1 151482 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 484-145 chr2 186237805 186238225 + 2 NA Intergenic L1MA3|LINE|L1 -151698 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 357-276 chr3 95931930 95932158 + 2 NA Intergenic Intergenic -248851 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 263-464 chrX 100549609 100549763 + 2 NA Intergenic L1MA2|LINE|L1 -35250 NM_022144 64102 Hs.132957 NM_022144 ENSG00000000005 TNMD BRICD4|CHM1L|TEM tenomodulin protein-coding 543-166 chr3 36337418 36337939 + 2 NA Intergenic Intergenic -42809 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 202-219 chr5 165202311 165202449 + 2 NA Intergenic Intergenic 732101 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 327-178 chr16 6924447 6924672 + 2 NA intron (NM_001142334, intron 1 of 13) MSTB|LTR|ERVL-MaLR 150750 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 212-82 chr12 40305409 40305589 + 2 NA intron (NM_198578, intron 27 of 50) intron (NM_198578, intron 27 of 50) 80502 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 196-141 chr2 184473568 184473710 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 94664 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 536-6 chr1 69763907 69764379 + 2 NA intron (NM_001370785, intron 3 of 26) intron (NM_001370785, intron 3 of 26) -155179 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 416-64 chr11 28847944 28848213 + 2 NA Intergenic Intergenic -370530 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 238-376 chr8 57151519 57151724 + 2 NA Intergenic L1M5|LINE|L1 -66655 NR_038235 100507651 Hs.371831 NR_038235 ENSG00000253301 LINC01606 - long intergenic non-protein coding RNA 1606 ncRNA 291-15 chr1 113802694 113802918 + 2 NA intron (NR_130896, intron 1 of 7) L1MC1|LINE|L1 9670 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 256-110 chr13 91424990 91425184 + 2 NA intron (NM_004466, intron 1 of 7) intron (NM_004466, intron 1 of 7) 26466 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 261-324 chr5 162802543 162802787 + 2 NA Intergenic Intergenic -634906 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 352-488 chr7 28850185 28850487 + 2 NA Intergenic Intergenic 107994 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 715-32 chr2 38480511 38481094 + 2 NA intron (NR_110259, intron 3 of 4) LTR67B|LTR|ERVL 34938 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 388-46 chr10 67444417 67444684 + 2 NA intron (NM_001127384, intron 5 of 17) L1M1|LINE|L1 -41140 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 591-163 chr8 36446823 36447267 + 2 NA Intergenic MIRc|SINE|MIR -337329 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 448-202 chr5 14022585 14022981 + 2 NA Intergenic LTR37B|LTR|ERV1 -78303 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 423-194 chr4 54735064 54735480 + 2 NA intron (NM_000222, intron 17 of 20) Charlie4a|DNA|hAT-Charlie 77344 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 768-52 chr8 61882070 61882710 + 2 NA Intergenic L2a|LINE|L2 -7449 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 247-372 chr6 170057810 170058007 + 2 NA Intergenic Intergenic 95285 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 265-62 chr11 38783313 38783510 + 2 NA Intergenic LTR37B|LTR|ERV1 134553 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 327-405 chr5 87061293 87061579 + 2 NA Intergenic Intergenic 53518 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 303-368 chr5 104501925 104502164 + 2 NA Intergenic Intergenic -597430 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 276-84 chr11 70614543 70614804 + 2 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) -16421 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 281-290 chr3 99412173 99412383 + 2 NA Intergenic L1ME4a|LINE|L1 -226316 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 434-271 chr7 131548773 131549136 + 2 NA intron (NM_001018111, intron 1 of 8) L2a|LINE|L2 7674 NM_005397 5420 Hs.744213 NM_005397 ENSG00000128567 PODXL Gp200|PC|PCLP|PCLP-1 podocalyxin like protein-coding 445-144 chr2 222993455 222993737 + 2 NA Intergenic Intergenic -58334 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 200-293 chrX 39707718 39707873 + 2 NA Intergenic MIR|SINE|MIR 46579 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 734-67 chr6 65003737 65004311 + 2 NA intron (NM_001292009, intron 13 of 43) intron (NM_001292009, intron 13 of 43) -297394 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 170-119 chr5 105423422 105423585 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 324029 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 269-190 chr2 49157935 49158165 + 2 NA Intergenic Intergenic -3523 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 400-223 chr3 103939664 103940028 + 2 NA Intergenic L1MA5|LINE|L1 -415730 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 945-4 chr12 114026083 114026808 + 2 NA Intergenic Intergenic -60120 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 169-6 chr1 226090047 226090186 + 2 NA intron (NR_146920, intron 3 of 3) intron (NR_146920, intron 3 of 3) 6541 NR_146920 105373113 Hs.149726 NR_146920 LINC01703 lncPARP1 long intergenic non-protein coding RNA 1703 ncRNA 421-293 chr8 65041165 65041547 + 2 NA Intergenic Intergenic 138984 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 321-156 chr13 65789041 65789208 + 2 NA Intergenic Intergenic -76923 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 471-290 chrUn_KI270751v1 149618 150038 + 2 NA NA (CATTC)n|Satellite|Satellite NA NA 449-272 chr8 85905307 85905641 + 2 NA Intergenic Intergenic -77532 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 233-85 chr13 85593188 85593338 + 2 NA Intergenic Intergenic 206156 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 554-35 chr10 83527733 83528108 + 2 NA Intergenic L1M2|LINE|L1 149169 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 286-387 chr6 51661716 51661932 + 2 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 39954 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 344-164 chr15 95377944 95378250 + 2 NA Intergenic Intergenic -50997 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 413-33 chr10 48677616 48677916 + 2 NA Intergenic L1M2|LINE|L1 -7107 NM_001370154 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 220-259 chr4 66525662 66525836 + 2 NA Intergenic L1MEc|LINE|L1 248925 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 137-27 chr14 71762912 71763033 + 2 NA Intergenic Intergenic -169199 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 202-241 chr7 48431040 48431208 + 2 NA intron (NM_152701, intron 42 of 61) L1MB8|LINE|L1 259666 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 387-189 chr2 180613567 180613906 + 2 NA Intergenic Intergenic -78368 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 514-262 chr7 19066250 19066602 + 2 NA Intergenic Intergenic 51210 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 306-175 chr15 100236470 100236668 + 2 NA intron (NM_139057, intron 7 of 21) AluJr|SINE|Alu 105406 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 446-307 chr8 99480340 99480720 + 2 NA intron (NM_017890, intron 24 of 61) intron (NM_017890, intron 24 of 61) 56200 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 201-256 chr9 30667304 30667421 + 2 NA Intergenic Intergenic -258908 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 382-92 chr13 77488036 77488391 + 2 NA Intergenic Intergenic -47461 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 227-3 chr1 29422937 29423154 + 2 NA Intergenic L1MA4A|LINE|L1 -72931 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 300-64 chr11 42455226 42455450 + 2 NA Intergenic Intergenic -201648 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 434-214 chr4 99968388 99968745 + 2 NA intron (NR_125923, intron 1 of 3) intron (NR_125923, intron 1 of 3) 18072 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 275-251 chr3 129674611 129674816 + 2 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) 14019 NM_015008 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 390-78 chr12 131772882 131773206 + 2 NA intron (NM_004592, intron 13 of 17) LTR1E|LTR|ERV1 -55349 NM_016155 4326 Hs.709245 NM_016155 ENSG00000198598 MMP17 MMP-17|MT4-MMP|MT4MMP|MTMMP4 matrix metallopeptidase 17 protein-coding 350-414 chr5 124606678 124606934 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger 138306 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 296-36 chr10 29717374 29717642 + 2 NA intron (NM_001323599, intron 1 of 38) Charlie5|DNA|hAT-Charlie 18293 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 278-87 chr13 28868723 28868997 + 2 NA intron (NM_001366651, intron 2 of 14) intron (NM_001366651, intron 2 of 14) 48521 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 198-69 chr14 76638964 76639133 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -122420 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 372-221 chr2 46445531 46445877 + 2 NA Intergenic L1MEc|LINE|L1 16514 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 348-3 chr1 37370880 37371094 + 2 NA Intergenic HERVL-int|LTR|ERVL 103456 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 244-273 chr4 91498620 91498802 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 778591 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 557-138 chr3 96450832 96451183 + 2 NA Intergenic Intergenic 91043 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 386-20 chr1 229901499 229901857 + 2 NA Intergenic L1ME1|LINE|L1 -7770 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 476-198 chr4 67601416 67601719 + 2 NA intron (NM_012108, intron 8 of 8) L1M1|LINE|L1 42840 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 297-447 chr7 88664683 88664881 + 2 NA Intergenic Intergenic -94918 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 291-31 chr1 198007575 198007819 + 2 NA Intergenic L2a|LINE|L2 90325 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 417-260 chr7 31950837 31951132 + 2 NA intron (NM_001322059, intron 3 of 17) MLT1B|LTR|ERVL-MaLR 119423 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 310-118 chr13 76123372 76123591 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -188349 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 209-26 chr1 239454856 239455013 + 2 NA intron (NM_001347716, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 68366 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 571-57 chr16 13685757 13686151 + 2 NA Intergenic L2a|LINE|L2 -234203 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 414-272 chr5 147203458 147203857 + 2 NA intron (NR_147190, intron 1 of 3) intron (NR_147190, intron 1 of 3) 31202 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 367-74 chr11 48870415 48870715 + 2 NA Intergenic ALR/Alpha|Satellite|centr -161035 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 309-389 chr4 59058413 59058575 + 2 NA Intergenic Intergenic 44921 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 332-391 chr4 167918947 167919223 + 2 NA Intergenic Intergenic -173452 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 336-43 chr1 211801260 211801545 + 2 NA intron (NM_014873, intron 2 of 7) MER34A|LTR|ERV1 -28235 NR_135818 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 312-171 chr15 97009889 97010161 + 2 NA Intergenic (TAAA)n|Simple_repeat|Simple_repeat 226590 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 318-406 chr4 77535566 77535737 + 2 NA intron (NM_006419, intron 1 of 4) MLT1G3|LTR|ERVL-MaLR 23898 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 348-102 chr11 124211172 124211424 + 2 NA Intergenic Intergenic -13341 NM_001291438 26492 Hs.381319 NM_001291438 OR8G2P HSTPCR120|OR8G2|OR8G4|ORL206|ORL486|TPCR120 olfactory receptor family 8 subfamily G member 2 pseudogene protein-coding 360-478 chr8 126940588 126940837 + 2 NA Intergenic Intergenic -72442 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 336-303 chr2 187019512 187019757 + 2 NA Intergenic Intergenic -170464 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 354-479 chr8 130710873 130711130 + 2 NA Intergenic LTR67B|LTR|ERVL -267327 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 306-204 chr18 40683902 40684124 + 2 NA Intergenic L1M5|LINE|L1 617727 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 221-80 chr14 54325166 54325376 + 2 NA Intergenic Intergenic -71597 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 288-241 chr21 27495282 27495546 + 2 NA Intergenic Intergenic -226965 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 243-486 chrX 97952642 97952875 + 2 NA Intergenic Intergenic -388223 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 517-203 chr4 144802850 144803308 + 2 NA Intergenic L1PB3|LINE|L1 156923 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 388-310 chr6 81128252 81128613 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 624249 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 475-186 chr3 98431047 98431354 + 2 NA Intergenic L1MA4A|LINE|L1 -38280 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 524-216 chr6 9488596 9488992 + 2 NA Intergenic L1M5|LINE|L1 836585 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 377-331 chr5 113894085 113894351 + 2 NA Intergenic Intergenic 380524 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 359-173 chr16 66235063 66235395 + 2 NA Intergenic Intergenic -131462 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 322-520 chr8 69045739 69045933 + 2 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 58354 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 272-2 chr1 5022401 5022619 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 367901 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 256-80 chr12 16644442 16644641 + 2 NA Intergenic HAL1b|LINE|L1 -36327 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 324-220 chr18 3671346 3671512 + 2 NA intron (NM_001308390, intron 4 of 10) L2b|LINE|L2 67692 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 401-283 chr6 61417763 61418076 + 2 NA Intergenic ALR/Alpha|Satellite|centr -156211 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 302-480 chr9 12257418 12257686 + 2 NA Intergenic L1MD2|LINE|L1 -435833 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 622-84 chr3 30250390 30250831 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -268258 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 445-231 chr6 24027638 24027921 + 2 NA Intergenic Intergenic -98436 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 719-20 chr12 37769233 37769787 + 2 NA Intergenic ALR/Alpha|Satellite|centr -547264 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 527-77 chr14 36343917 36344337 + 2 NA Intergenic Intergenic -23451 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 258-426 chr9 95015229 95015447 + 2 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -50012 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 267-39 chr10 12608872 12609132 + 2 NA intron (NM_001351032, intron 4 of 11) MIR|SINE|MIR 30249 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 330-440 chr5 128545268 128545536 + 2 NA Intergenic Intergenic -7157 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 313-169 chr15 84061984 84062160 + 2 NA Intergenic L1MA9|LINE|L1 -18115 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 269-67 chr11 81185180 81185386 + 2 NA Intergenic Intergenic -422480 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 317-202 chr18 68572069 68572261 + 2 NA Intergenic L1PA10|LINE|L1 142943 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 514-243 chr5 162619861 162620193 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 552385 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 297-445 chr7 82537386 82537676 + 2 NA Intergenic Intergenic -93575 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 338-386 chr4 85286737 85286951 + 2 NA Intergenic L1M4c|LINE|L1 -188306 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 449-145 chr20 55751334 55751666 + 2 NA Intergenic (TATATTA)n|Simple_repeat|Simple_repeat 254019 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 405-82 chr14 36258095 36258364 + 2 NA Intergenic Intergenic 62408 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 170-62 chr18 64396955 64397063 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -136954 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 115-20 chr2 163840099 163840183 + 2 NA Intergenic Intergenic -104133 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 313-304 chr20 15736543 15736756 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 186665 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 639-7 chr1 173173660 173174245 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 31580 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 212-59 chr11 27101801 27101949 + 2 NA intron (NM_003986, intron 5 of 8) L1MA9|LINE|L1 61060 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 361-129 chr13 57966986 57967291 + 2 NA Intergenic PRIMA4_LTR|LTR|ERV1 -198689 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 865-49 chr9 29331909 29332586 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -118646 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 508-73 chr17 11819897 11820335 + 2 NA intron (NM_001372, intron 45 of 68) L1M6|LINE|L1 -62786 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 281-134 chr15 42605732 42605948 + 2 NA intron (NM_020759, intron 3 of 32) intron (NM_020759, intron 3 of 32) 30234 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 409-311 chr9 84197093 84197426 + 2 NA Intergenic Intergenic 133816 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 483-119 chr2 114426869 114427203 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -15605 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 569-146 chr5 65884894 65885240 + 2 NA Intergenic AluSz6|SINE|Alu -41487 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 676-69 chr20 33057501 33058091 + 2 NA intron (NM_182658, intron 2 of 14) CER|Satellite|Satellite 2465 NM_182658 359710 Hs.472442 NM_182658 ENSG00000186190 BPIFB3 C20orf185|LPLUNC3|RYA3 BPI fold containing family B member 3 protein-coding 337-328 chr22 33382203 33382379 + 2 NA intron (NM_133642, intron 8 of 14) intron (NM_133642, intron 8 of 14) 54378 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 148-24 chr14 42623427 42623531 + 2 NA Intergenic Intergenic 1016623 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 470-211 chr5 42508902 42509313 + 2 NA intron (NM_001242401, intron 2 of 10) L2a|LINE|L2 -38936 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 365-354 chr6 86532536 86532875 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -404823 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 217-34 chr10 29113086 29113249 + 2 NA Intergenic Intergenic -175903 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 487-293 chr8 99410004 99410393 + 2 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 126532 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 325-408 chr4 120068621 120068929 + 2 NA Intergenic Intergenic -1927 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 500-236 chr5 105789340 105789726 + 2 NA Intergenic Intergenic 690059 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 253-212 chr2 229018865 229019037 + 2 NA Intergenic L1MA8|LINE|L1 213141 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 385-201 chr2 210891522 210891799 + 2 NA Intergenic L1PA15|LINE|L1 274089 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 405-7 chr1 78260420 78260750 + 2 NA intron (NR_027310, intron 3 of 5) L1PA10|LINE|L1 30986 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 241-178 chr2 34451911 34452092 + 2 NA Intergenic L1MA2|LINE|L1 -225556 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 179-131 chr9 77602220 77602319 + 2 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 46053 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 282-273 chr21 34732138 34732356 + 2 NA intron (NR_024351, intron 4 of 5) intron (NR_024351, intron 4 of 5) 4935 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 306-366 chr4 111984674 111984947 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -160644 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 683-2 chr1 78621657 78622326 + 2 NA intron (NM_006820, intron 1 of 8) L1MA4A|LINE|L1 1543 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 314-52 chr1 247190985 247191289 + 2 NA Intergenic Intergenic 10923 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 280-341 chr6 7750919 7751161 + 2 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 24941 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 180-74 chr2 12173025 12173133 + 2 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) -26051 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 317-548 chrX 83542043 83542257 + 2 NA Intergenic Intergenic 33860 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 195-241 chr8 114094158 114094328 + 2 NA Intergenic Intergenic -657304 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 433-131 chr2 67719118 67719493 + 2 NA Intergenic Intergenic 106257 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 453-159 chr3 51175228 51175585 + 2 NA intron (NM_004947, intron 12 of 52) L1MA9|LINE|L1 -209885 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 221-159 chr2 226338918 226339102 + 2 NA Intergenic L1MCa|LINE|L1 196216 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 351-25 chr1 215445342 215445529 + 2 NA Intergenic L1PA13|LINE|L1 -121869 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 347-561 chrX 73292776 73292951 + 2 NA Intergenic L1PB1|LINE|L1 -78012 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 819-19 chr22 27076795 27077335 + 2 NA Intergenic MIR3|SINE|MIR -16547 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 309-381 chr4 23585973 23586163 + 2 NA Intergenic Intergenic 295224 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 295-52 chr10 85636266 85636554 + 2 NA intron (NM_017551, intron 13 of 15) intron (NM_017551, intron 13 of 15) 58679 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 326-340 chr3 83933201 83933473 + 2 NA Intergenic MER61-int|LTR|ERV1 936238 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 374-160 chr19 2681783 2682035 + 2 NA intron (NM_052847, intron 1 of 4) AluSx|SINE|Alu 20785 NM_052847 2788 Hs.515544 NM_052847 ENSG00000176533 GNG7 - G protein subunit gamma 7 protein-coding 603-78 chr2 6492864 6493305 + 2 NA Intergenic L1PBa|LINE|L1 -117662 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 385-393 chr8 135890575 135890818 + 2 NA Intergenic Intergenic 433240 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 299-352 chr5 10473555 10473804 + 2 NA Intergenic Intergenic -4358 NR_106747 102465138 NR_106747 ENSG00000277073 MIR6131 hsa-mir-6131 microRNA 6131 ncRNA 353-110 chr12 45468638 45468869 + 2 NA Intergenic L2c|LINE|L2 176063 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 235-76 chr12 15156774 15156944 + 2 NA intron (NM_032918, intron 2 of 4) MIR|SINE|MIR 4936 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 313-470 chr6 76521497 76521768 + 2 NA TTS (NR_149101) TTS (NR_149101) 71991 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 335-183 chr16 20351439 20351606 + 2 NA intron (NM_003361, intron 1 of 10) MIR|SINE|MIR 1193 NM_001008389 7369 Hs.654425 NM_003361 ENSG00000169344 UMOD ADMCKD2|FJHN|HNFJ|HNFJ1|MCKD2|THGP|THP uromodulin protein-coding 281-348 chr5 12824977 12825238 + 2 NA Intergenic L1PB4|LINE|L1 157248 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 709-99 chr9 81364578 81364976 + 2 NA Intergenic L1PBa1|LINE|L1 324758 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 321-214 chr16 47316785 47317052 + 2 NA intron (NM_030790, intron 8 of 17) intron (NM_030790, intron 8 of 17) 144145 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 274-74 chr11 60576156 60576363 + 2 NA Intergenic L1MD2|LINE|L1 -39492 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 701-19 chr13 73585688 73586202 + 2 NA intron (NR_047009, intron 1 of 2) L1MEg|LINE|L1 21701 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 343-473 chr6 80712390 80712647 + 2 NA Intergenic Intergenic 605847 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 429-282 chr7 108363770 108364166 + 2 NA intron (NR_163871, intron 2 of 29) L1MC3|LINE|L1 -35442 NM_001371176 277-22 chr1 166677546 166677721 + 2 NA Intergenic L1ME3A|LINE|L1 73717 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 355-454 chr7 20532109 20532384 + 2 NA Intergenic Intergenic -83421 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 444-216 chr6 9442970 9443361 + 2 NA Intergenic L1MC4|LINE|L1 790956 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 476-181 chr3 111743291 111743658 + 2 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) 10978 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 241-353 chr7 3284587 3284777 + 2 NA Intergenic L1ME2|LINE|L1 -16570 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 404-30 chr10 32632789 32633055 + 2 NA intron (NM_001321115, intron 19 of 43) L1M4|LINE|L1 186782 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 375-462 chr9 120176090 120176377 + 2 NA Intergenic Intergenic 68817 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 532-44 chr12 43084699 43085103 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -70414 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 362-314 chr4 83532756 83533063 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -3005 NM_001256422 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 221-120 chr18 11257326 11257509 + 2 NA Intergenic Intergenic -108655 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 197-26 chr10 37600210 37600331 + 2 NA Intergenic L1M1|LINE|L1 2661 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 312-326 chr3 46136599 46136857 + 2 NA Intergenic L1MB7|LINE|L1 71585 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 250-46 chr10 78345143 78345307 + 2 NA Intergenic L1MB8|LINE|L1 77883 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 256-307 chr5 18140447 18140611 + 2 NA Intergenic Intergenic 333255 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 447-268 chr8 85608836 85609246 + 2 NA Intergenic MER33|DNA|hAT-Charlie 46635 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 396-141 chr19 7902140 7902516 + 2 NA TTS (NM_001268284) TTS (NM_001268284) -1549 NM_145185 5609 Hs.531754 NM_145185 ENSG00000076984 MAP2K7 JNKK2|MAPKK7|MEK|MEK 7|MKK7|PRKMK7|SAPKK-4|SAPKK4 mitogen-activated protein kinase kinase 7 protein-coding 714-67 chr7 8075184 8075767 + 2 NA intron (NM_138426, intron 6 of 7) intron (NM_138426, intron 6 of 7) 106679 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 307-19 chr1 115411961 115412192 + 2 NA Intergenic MIRb|SINE|MIR -73840 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 617-72 chr2 205626553 205627054 + 2 NA Intergenic AluSq2|SINE|Alu -55697 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 613-73 chr20 59392265 59392837 + 2 NA Intergenic Intergenic 91940 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 359-159 chr15 81715247 81715527 + 2 NA Intergenic L1MB3|LINE|L1 330631 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 506-267 chr7 53491048 53491466 + 2 NA Intergenic Intergenic 320674 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 235-167 chr2 57791411 57791594 + 2 NA Intergenic L1MA1|LINE|L1 -116149 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 618-129 chr8 79227646 79228064 + 2 NA Intergenic L1MA1|LINE|L1 -104333 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 302-208 chr2 45251499 45251788 + 2 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 3298 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 666-76 chr3 54283383 54283897 + 2 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 161088 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 344-115 chr12 116606330 116606603 + 2 NA Intergenic MIRb|SINE|MIR 47085 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 560-177 chr8 35784435 35784827 + 2 NA intron (NM_001322818, intron 16 of 16) AluSz6|SINE|Alu -74311 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 563-138 chr4 44641495 44641873 + 2 NA intron (NM_182592, intron 2 of 5) intron (NM_182592, intron 2 of 5) 9957 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 450-12 chr1 164889751 164890181 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -115325 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 284-377 chr7 39570780 39570990 + 2 NA intron (NM_001282446, intron 2 of 2) intron (NM_001282446, intron 2 of 2) 4481 NM_001282446 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 219-293 chr5 108765674 108765813 + 2 NA intron (NR_146155, intron 1 of 19) intron (NR_146155, intron 1 of 19) 16795 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 193-84 chr18 12345592 12345735 + 2 NA intron (NM_006796, intron 13 of 16) intron (NM_006796, intron 13 of 16) 31613 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 214-147 chr19 30401065 30401220 + 2 NA intron (NM_014717, intron 1 of 4) L1MD2|LINE|L1 28758 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 704-89 chr8 132155766 132156253 + 2 NA intron (NM_001204824, intron 9 of 14) intron (NM_001204824, intron 9 of 14) -50744 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 333-54 chr10 48734409 48734667 + 2 NA intron (NM_020945, intron 10 of 61) (AT)n|Simple_repeat|Simple_repeat 49075 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 417-122 chr19 10959526 10959895 + 2 NA Intergenic Intergenic -1320 NM_001128847 6597 Hs.327527 NM_003072 ENSG00000127616 SMARCA4 BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 435-107 chr18 1173514 1173790 + 2 NA Intergenic Intergenic 185977 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 330-412 chr5 33007241 33007470 + 2 NA Intergenic Intergenic 59912 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 342-253 chr2 132705303 132705598 + 2 NA intron (NM_207481, intron 17 of 17) L2-3_Crp|LINE|L2 -33924 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 296-177 chr16 73133401 73133580 + 2 NA intron (NM_207385, intron 2 of 3) MLT1B|LTR|ERVL-MaLR 10957 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 484-197 chr4 136151526 136151871 + 2 NA Intergenic LTR27E|LTR|ERV1 -238018 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 594-158 chr8 141888107 141888547 + 2 NA Intergenic L1ME3Cz|LINE|L1 -102014 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 447-115 chr2 12890475 12890801 + 2 NA Intergenic Intergenic 116375 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 309-581 chr9 109721747 109721966 + 2 NA intron (NM_001037293, intron 1 of 6) intron (NM_001037293, intron 1 of 6) -58342 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 458-189 chr4 101562618 101562951 + 2 NA Intergenic Intergenic 215007 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 161-105 chr7 49158079 49158221 + 2 NA Intergenic Intergenic 233603 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 381-402 chr9 13413218 13413512 + 2 NA intron (NR_033863, intron 2 of 2) L1ME3A|LINE|L1 17964 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 418-257 chr7 37038563 37038830 + 2 NA intron (NM_001206480, intron 15 of 21) MLT1A|LTR|ERVL-MaLR 40900 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 310-311 chr3 2153329 2153499 + 2 NA intron (NM_175607, intron 2 of 24) L2a|LINE|L2 -9173 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 249-187 chr2 43625568 43625785 + 2 NA Intergenic AluSx|SINE|Alu -11584 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 394-180 chr2 129068996 129069361 + 2 NA Intergenic Intergenic 204578 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 214-52 chr10 111438392 111438552 + 2 NA Intergenic L2a|LINE|L2 324181 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 272-25 chr1 194365814 194366036 + 2 NA Intergenic Intergenic 1061180 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 125-37 chr3 85924177 85924282 + 2 NA intron (NM_001256502, intron 6 of 10) Looper|DNA|PiggyBac -96179 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 172-131 chr8 80127387 80127521 + 2 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 43667 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 243-44 chr10 60195562 60195713 + 2 NA intron (NM_001204403, intron 17 of 43) intron (NM_001204403, intron 17 of 43) -54621 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 212-266 chr5 138685116 138685255 + 2 NA Intergenic Intergenic 68124 NR_134245 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 366-120 chr14 34208120 34208371 + 2 NA Intergenic Intergenic 253995 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 343-197 chr17 58809115 58809415 + 2 NA intron (NM_014906, intron 1 of 6) AluJr4|SINE|Alu 53396 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 544-158 chr3 189922402 189922767 + 2 NA Intergenic L1MC3|LINE|L1 92662 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 256-227 chr2 203168058 203168240 + 2 NA intron (NM_001114132, intron 37 of 54) intron (NM_001114132, intron 37 of 54) -70292 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 255-118 chr14 101012462 101012692 + 2 NA Intergenic HAL1|LINE|L1 -9489 NR_029871 494328 NR_029871 ENSG00000199088 MIR379 MIRN379|hsa-mir-379|mir-379 microRNA 379 ncRNA 312-483 chr7 46045590 46045872 + 2 NA Intergenic L1M5|LINE|L1 -124459 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 185-172 chr5 131674025 131674181 + 2 NA intron (NM_133372, intron 13 of 17) intron (NM_133372, intron 13 of 17) -38874 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 627-63 chr20 54489350 54489795 + 2 NA intron (NM_018431, intron 1 of 7) (ATTT)n|Simple_repeat|Simple_repeat 13979 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 511-248 chr7 72425740 72426062 + 2 NA intron (NM_001363460, intron 1 of 5) intron (NM_001363460, intron 1 of 5) -13563 NM_031468 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 207-155 chr2 182384580 182384740 + 2 NA intron (NM_005019, intron 1 of 14) L1M1|LINE|L1 42388 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 413-5 chr1 45746041 45746278 + 2 NA exon (NM_005897, exon 2 of 9) exon (NM_005897, exon 2 of 9) 4494 NM_005897 3652 Hs.744252 NM_005897 ENSG00000197429 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 490-32 chr1 239076812 239077152 + 2 NA Intergenic L1MA2|LINE|L1 -309586 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 469-67 chr12 61732849 61733227 + 2 NA intron (NM_178539, intron 4 of 4) intron (NM_178539, intron 4 of 4) 459801 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 383-146 chr16 66254676 66254887 + 2 NA Intergenic L1ME4a|LINE|L1 -111910 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 484-266 chr8 90144714 90144996 + 2 NA Intergenic L1MA3|LINE|L1 -61976 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 452-124 chr2 59174277 59174692 + 2 NA Intergenic HERVK13-int|LTR|ERVK -43224 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 227-54 chr10 121620380 121620602 + 2 NA Intergenic Intergenic -22033 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 309-516 chr7 83091225 83091438 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 71553 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 390-357 chr7 72251823 72252083 + 2 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 85438 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 238-292 chr5 28110054 28110245 + 2 NA Intergenic Intergenic 177516 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 694-44 chr15 58351322 58351778 + 2 NA Intergenic L1ME3G|LINE|L1 -80441 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 697-15 chr12 10383897 10384453 + 2 NA intron (NR_120430, intron 3 of 3) L1MA5|LINE|L1 5866 NM_007360 22914 Hs.387787 NM_007360 ENSG00000213809 KLRK1 CD314|D12S2489E|KLR|NKG2-D|NKG2D killer cell lectin like receptor K1 protein-coding 529-80 chr16 77176839 77177218 + 2 NA Intergenic Intergenic -14162 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 240-312 chr4 32179397 32179576 + 2 NA Intergenic L1M4c|LINE|L1 -157064 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 306-364 chr4 104784495 104784769 + 2 NA Intergenic L2|LINE|L2 -289738 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 253-70 chr11 37762166 37762342 + 2 NA Intergenic Intergenic -176347 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 668-7 chr1 218882536 218883066 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 35710 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 250-452 chr9 25691194 25691378 + 2 NA Intergenic L2c|LINE|L2 -12428 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 440-83 chr16 47225673 47226072 + 2 NA intron (NM_030790, intron 13 of 17) L1M4|LINE|L1 81804 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 343-570 chr9 2345411 2345637 + 2 NA Intergenic Intergenic 187068 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 218-75 chr12 93228587 93228766 + 2 NA intron (NR_040096, intron 2 of 4) L1ME3Cz|LINE|L1 54310 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 232-262 chr4 32199501 32199697 + 2 NA Intergenic Intergenic -151439 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 290-324 chr4 144843183 144843449 + 2 NA Intergenic L1ME3A|LINE|L1 197160 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 216-298 chr6 40828316 40828481 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 194882 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 290-236 chr2 238926671 238926953 + 2 NA promoter-TSS (NR_034162) promoter-TSS (NR_034162) -543 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 336-359 chr3 916677 916893 + 2 NA Intergenic Intergenic -176239 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 351-206 chr2 16826222 16826536 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -160545 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 446-237 chr5 45325108 45325472 + 2 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 371090 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 665-47 chr19 52416175 52416627 + 2 NA exon (NM_032423, exon 7 of 7) exon (NM_032423, exon 7 of 7) -12747 NM_001291368 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 364-256 chr21 30342575 30342840 + 2 NA Intergenic Intergenic -5013 NM_001077711 643812 Hs.580881 NM_001077711 ENSG00000206107 KRTAP27-1 - keratin associated protein 27-1 protein-coding 435-173 chr4 114502388 114502711 + 2 NA Intergenic L1MA7|LINE|L1 -95853 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 324-251 chr2 36212959 36213125 + 2 NA Intergenic Intergenic 142528 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 319-337 chr3 96467576 96467886 + 2 NA Intergenic L1PA8|LINE|L1 107767 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 265-176 chr2 53383962 53384223 + 2 NA Intergenic L2c|LINE|L2 -383691 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 190-103 chr20 13170011 13170164 + 2 NA TTS (NM_018327) TTS (NM_018327) -51187 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 481-165 chr20 249509 249899 + 2 NA Intergenic L1ME1|LINE|L1 -8020 NM_207469 400830 Hs.516819 NM_207469 ENSG00000186458 DEFB132 BD-32|DEFB-32|DEFB32|HEL-75|KFLL827|UNQ827 defensin beta 132 protein-coding 336-381 chr3 167171514 167171716 + 2 NA Intergenic MER77B|LTR|ERVL 208668 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 553-229 chr8 77968147 77968565 + 2 NA Intergenic L1MC2|LINE|L1 517659 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 375-51 chr10 61221490 61221817 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 205378 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 492-12 chr1 172798114 172798456 + 2 NA Intergenic MER101-int|LTR|ERV1 139182 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 308-510 chr8 120302960 120303224 + 2 NA intron (NM_021110, intron 36 of 47) L1PREC2|LINE|L1 142058 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 214-216 chr3 125257970 125258130 + 2 NA intron (NM_001348434, intron 6 of 7) intron (NM_001348434, intron 6 of 7) -45285 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 497-285 chr8 108548641 108548927 + 2 NA Intergenic Intergenic 105160 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 329-134 chr12 117829646 117829838 + 2 NA intron (NM_173598, intron 3 of 19) MER58A|DNA|hAT-Charlie 139248 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 320-313 chr20 43092475 43092716 + 2 NA intron (NM_133170, intron 1 of 31) MLT1I|LTR|ERVL-MaLR 97311 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 490-67 chr12 19632049 19632345 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 191598 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 179-61 chr22 21720444 21720583 + 2 NA intron (NM_013313, intron 1 of 4) AluSx|SINE|Alu 15281 NR_130910 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 348-251 chr2 227156744 227157071 + 2 NA intron (NM_000092, intron 1 of 47) L1ME2|LINE|L1 7652 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 457 chr1 5026918 5027211 + 2 NA Intergenic L1MEj|LINE|L1 372455 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 368-34 chr1 242151686 242152040 + 2 NA intron (NM_001320272, intron 6 of 10) L1MD1|LINE|L1 -152765 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 354-433 chr7 64973187 64973504 + 2 NA 3' UTR (NM_015852, exon 4 of 4) 3' UTR (NM_015852, exon 4 of 4) 17691 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 461-124 chr2 38051615 38051879 + 2 NA intron (NM_144713, intron 10 of 10) L1MA4A|LINE|L1 -15406 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 335-89 chr11 29642709 29643033 + 2 NA Intergenic Intergenic 24069 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 384-317 chr6 72651877 72652148 + 2 NA intron (NR_120503, intron 2 of 3) intron (NR_120503, intron 2 of 3) 21517 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 402-362 chr9 24802534 24802856 + 2 NA Intergenic Intergenic -256798 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 244-135 chr18 48349417 48349583 + 2 NA intron (NM_001371290, intron 3 of 9) intron (NM_001371290, intron 3 of 9) 26127 NM_001371291 343-169 chr15 99989246 99989487 + 2 NA intron (NM_139057, intron 20 of 21) intron (NM_139057, intron 20 of 21) 182343 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 525-68 chr13 98059788 98060219 + 2 NA Intergenic Intergenic -82586 NM_001286839 10160 Hs.403917 NM_005766 ENSG00000152767 FARP1 CDEP|FARP1-IT1|PLEKHC2|PPP1R75 FERM, ARH/RhoGEF and pleckstrin domain protein 1 protein-coding 240-141 chr14 69709276 69709460 + 2 NA intron (NM_014734, intron 5 of 5) intron (NM_014734, intron 5 of 5) -57774 NM_001039465 6430 Hs.632326 NM_006925 ENSG00000100650 SRSF5 HRS|SFRS5|SRP40 serine and arginine rich splicing factor 5 protein-coding 398-249 chr4 129585495 129585788 + 2 NA Intergenic L1M4|LINE|L1 185837 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 235-32 chr10 16005757 16005909 + 2 NA Intergenic Intergenic -145300 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 536-244 chr8 139646148 139646491 + 2 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 56804 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 279-299 chr4 103893499 103893737 + 2 NA Intergenic Intergenic -173633 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 268-125 chr14 79214978 79215174 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 15094 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 351-452 chr7 57979867 57980170 + 2 NA Intergenic ALR/Alpha|Satellite|centr 529841 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 252-394 chr7 25573455 25573623 + 2 NA Intergenic Intergenic 89601 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 199-210 chr5 164583878 164584043 + 2 NA Intergenic Intergenic 113681 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 496-198 chr4 85029366 85029737 + 2 NA Intergenic MLT2C2|LTR|ERVL 62067 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 355-538 chr9 103474416 103474682 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -149516 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 401-3 chr1 38321175 38321438 + 2 NA Intergenic L1MC3|LINE|L1 -106539 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 614-53 chr2 77082569 77083031 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 96835 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 301-336 chr4 136462359 136462559 + 2 NA Intergenic Intergenic -548779 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 321-421 chr4 67362486 67362732 + 2 NA Intergenic MLT2D|LTR|ERVL 59391 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 327-513 chr8 144985157 144985359 + 2 NA intron (NR_023392, intron 4 of 4) intron (NR_023392, intron 4 of 4) -9607 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 310-339 chr3 110978261 110978540 + 2 NA Intergenic AluJr4|SINE|Alu 91559 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 357-72 chr11 95374398 95374638 + 2 NA Intergenic Intergenic -142043 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 317-65 chr10 106655934 106656194 + 2 NA intron (NM_001206569, intron 17 of 25) intron (NM_001206569, intron 17 of 25) 508642 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 330-236 chr19 29059672 29059889 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 57225 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 336-3 chr1 12692118 12692429 + 2 NA Intergenic LTR102_Mam|LTR|ERVL -23837 NM_001103170 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 314-273 chr2 43666838 43667068 + 2 NA intron (NM_172069, intron 2 of 29) (TAATAG)n|Simple_repeat|Simple_repeat 9476 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 491-33 chr11 40816099 40816539 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -523189 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 252-264 chr3 65932509 65932671 + 2 NA intron (NR_145422, intron 1 of 2) MLT1O|LTR|ERVL-MaLR 21968 NR_145422 151877 Hs.476636 NR_145422 ENSG00000272610 MAGI1-IT1 - MAGI1 intronic transcript 1 ncRNA 381-293 chr5 4171774 4171968 + 2 NA Intergenic Intergenic 576039 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 238-398 chr8 130630642 130630861 + 2 NA Intergenic Intergenic -187077 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 482-81 chr14 87337731 87338052 + 2 NA Intergenic L1MA2|LINE|L1 317403 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 539-34 chr10 111389958 111390353 + 2 NA Intergenic Intergenic 275864 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 439-236 chr5 146838675 146839058 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 39919 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 232-60 chr11 91347378 91347582 + 2 NA Intergenic L2a|LINE|L2 -478278 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 500-282 chr8 13820371 13820730 + 2 NA Intergenic MER4CL34|LTR|ERV1 190860 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 347-241 chr2 134162105 134162402 + 2 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) 35128 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 315-337 chr4 54717342 54717622 + 2 NA intron (NM_000222, intron 7 of 20) intron (NM_000222, intron 7 of 20) 59554 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 294-17 chr1 174686092 174686317 + 2 NA intron (NM_001366446, intron 15 of 25) L2c|LINE|L2 -14335 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 381-177 chr19 58109656 58109961 + 2 NA intron (NR_027135, intron 1 of 1) intron (NR_027135, intron 1 of 1) 8618 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 367-489 chrX 76949833 76950134 + 2 NA intron (NR_110403, intron 1 of 3) L1PA15|LINE|L1 -30623 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 390-382 chr8 89456693 89456932 + 2 NA Intergenic Intergenic 300899 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 291-103 chr12 91148788 91148967 + 2 NA intron (NM_133507, intron 1 of 1) intron (NM_133507, intron 1 of 1) 29769 NM_133505 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 358-175 chr19 14717689 14717882 + 2 NA intron (NM_001300912, intron 11 of 11) intron (NM_001300912, intron 11 of 11) 27737 NM_001352244 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 219-156 chr19 52071995 52072164 + 2 NA intron (NM_001369830, intron 2 of 2) L1M4c|LINE|L1 22192 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 175-163 chr8 77561133 77561265 + 2 NA Intergenic L1MCa|LINE|L1 110502 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 265-200 chr2 164725364 164725595 + 2 NA intron (NM_001365670, intron 5 of 13) AluJb|SINE|Alu -37702 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 258-359 chr6 168323725 168323938 + 2 NA Intergenic L1M5|LINE|L1 -4054 NM_214462 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 365-121 chr14 59494798 59495050 + 2 NA intron (NM_016475, intron 3 of 6) intron (NM_016475, intron 3 of 6) 10407 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 350-523 chr8 105978798 105978994 + 2 NA intron (NR_125797, intron 1 of 4) L1MA8|LINE|L1 81607 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 217-393 chr9 95414996 95415142 + 2 NA Intergenic MER47C|DNA|TcMar-Tigger -48540 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 599-39 chr15 94214957 94215465 + 2 NA Intergenic L1MA3|LINE|L1 -82990 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 187-156 chr7 25683491 25683620 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) -12824 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 310-310 chr22 26263671 26263878 + 2 NA intron (NM_001184776, intron 1 of 14) L2|LINE|L2 94300 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 381-204 chr2 126594325 126594697 + 2 NA Intergenic L1ME1|LINE|L1 -61424 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 292-28 chr1 177459448 177459663 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 107969 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 404-170 chr2 117606458 117606768 + 2 NA Intergenic Intergenic -208078 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 226-15 chr1 95824251 95824382 + 2 NA Intergenic Intergenic -167752 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 337-389 chr4 41770638 41770953 + 2 NA Intergenic L1ME3Cz|LINE|L1 -21825 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 500-119 chr19 40032035 40032360 + 2 NA 3' UTR (NM_001005851, exon 5 of 5) 3' UTR (NM_001005851, exon 5 of 5) 24034 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 151-63 chr5 95415954 95416058 + 2 NA intron (NM_152548, intron 4 of 9) intron (NM_152548, intron 4 of 9) 24640 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 549-89 chr18 61110798 61111241 + 2 NA Intergenic L1ME4a|LINE|L1 -222411 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 168-72 chr20 52480668 52480797 + 2 NA Intergenic Intergenic -140106 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 501-109 chr2 80297406 80297795 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 7152 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 556-156 chr4 52333009 52333391 + 2 NA Intergenic Intergenic 281896 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 164-48 chr17 74091904 74092004 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -111724 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 154-28 chr13 24719784 24719867 + 2 NA Intergenic Intergenic 39414 NM_001185085 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 276-137 chr14 30628983 30629216 + 2 NA intron (NM_001283032, intron 2 of 23) intron (NM_001283032, intron 2 of 23) 6780 NM_016106 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 302-394 chr6 159283093 159283303 + 2 NA Intergenic Intergenic -100333 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 317-102 chr12 13307513 13307752 + 2 NA Intergenic G-rich|Low_complexity|Low_complexity 69113 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 242-84 chr12 118783247 118783469 + 2 NA Intergenic Intergenic -21679 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 320-429 chr5 28936561 28936735 + 2 NA Intergenic L1PA7|LINE|L1 9778 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 345-140 chr13 96613068 96613334 + 2 NA intron (NM_153456, intron 1 of 1) L2a|LINE|L2 185972 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 270-377 chr8 52253935 52254168 + 2 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) 441 NM_001352874 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 351-187 chr18 37660530 37660723 + 2 NA Intergenic Intergenic 3491 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 392-203 chr3 81020784 81021022 + 2 NA intron (NR_132411, intron 1 of 1) L1MC2|LINE|L1 27035 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 567-157 chr6 52111563 52111998 + 2 NA Intergenic L2a|LINE|L2 -24167 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 328-465 chr5 105741200 105741406 + 2 NA Intergenic Intergenic 641829 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 117-3 chr10 25432490 25432575 + 2 NA intron (NM_020752, intron 4 of 10) L1ME4b|LINE|L1 -219180 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 368-313 chr3 185238622 185238961 + 2 NA intron (NM_001966, intron 2 of 6) L1PB4|LINE|L1 14481 NR_106712 100847054 NR_106712 ENSG00000264614 MIR5588 - microRNA 5588 ncRNA 426-173 chr3 15926063 15926433 + 2 NA Intergenic Intergenic 52477 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 386-43 chr10 104096887 104097158 + 2 NA Intergenic L1ME1|LINE|L1 -11142 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 238-48 chr10 95507315 95507518 + 2 NA intron (NM_001290295, intron 1 of 24) intron (NM_001290295, intron 1 of 24) 53955 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 368-491 chrX 38421817 38422034 + 2 NA TTS (NM_000531) TTS (NM_000531) 69321 NM_000531 5009 Hs.117050 NM_000531 ENSG00000036473 OTC OCTD ornithine carbamoyltransferase protein-coding 362-366 chr5 170021307 170021582 + 2 NA intron (NR_156756, intron 34 of 52) intron (NR_156756, intron 34 of 52) -7044 NR_039609 100616498 NR_039609 ENSG00000263831 MIR378E mir-378e microRNA 378e ncRNA 355-191 chr17 12432814 12433131 + 2 NA Intergenic Intergenic -116996 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 213-162 chr20 42025625 42025782 + 2 NA Intergenic Intergenic -407326 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 204-220 chr4 77346661 77346834 + 2 NA Intergenic Intergenic -165006 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 414-204 chr3 36691610 36691981 + 2 NA Intergenic MER90a|LTR|ERV1 48066 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 253-366 chr6 141914225 141914406 + 2 NA Intergenic L2|LINE|L2 174484 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 415-302 chr9 28920200 28920533 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -31411 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 652-92 chr5 13521377 13521735 + 2 NA Intergenic L1MC3|LINE|L1 422924 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 181-60 chr18 56231666 56231807 + 2 NA Intergenic Intergenic -40474 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 274-288 chr4 85362060 85362304 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -112968 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 282-265 chr20 48886176 48886445 + 2 NA Intergenic Intergenic -35401 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 510-179 chr3 4861175 4861519 + 2 NA Intergenic L1MEi|LINE|L1 45154 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 352-372 chr4 80327748 80328013 + 2 NA Intergenic L2b|LINE|L2 -7840 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 346-73 chr11 71186502 71186801 + 2 NA intron (NM_012309, intron 1 of 24) intron (NM_012309, intron 1 of 24) 38145 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 255-171 chr18 67324080 67324300 + 2 NA Intergenic Intergenic -192356 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 343-164 chr15 79717675 79717945 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 179187 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 255-467 chrX 39741839 39742001 + 2 NA Intergenic Intergenic 80704 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 194-123 chr3 78275020 78275172 + 2 NA Intergenic Intergenic -226133 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 606-125 chr5 3562034 3562558 + 2 NA Intergenic L1MA4A|LINE|L1 -26202 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 608-109 chr4 59241724 59242321 + 2 NA Intergenic L1M3|LINE|L1 228449 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 419-32 chr10 60884716 60885051 + 2 NA intron (NM_001350906, intron 9 of 12) L1MA7|LINE|L1 59302 NM_001350904 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 330-415 chr5 39840783 39840992 + 2 NA Intergenic Intergenic -211404 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 377-117 chr14 45902339 45902572 + 2 NA Intergenic MER68|LTR|ERVL -161704 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 263-122 chr15 87909239 87909405 + 2 NA intron (NM_001012338, intron 17 of 19) intron (NM_001012338, intron 17 of 19) 36946 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 246-335 chr5 123310462 123310637 + 2 NA Intergenic L1MD2|LINE|L1 113043 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 177-101 chr3 6763305 6763393 + 2 NA intron (NR_110125, intron 2 of 3) (A)n|Simple_repeat|Simple_repeat 42100 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 415-298 chr8 144969734 144970061 + 2 NA Intergenic Intergenic -19017 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 344-220 chr2 6216399 6216711 + 2 NA Intergenic Intergenic 158867 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 223-122 chr17 72096164 72096333 + 2 NA intron (NR_103738, intron 2 of 6) L2c|LINE|L2 19768 NR_103738 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 516-33 chr11 62116294 62116736 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -7496 NM_001040694 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 230-313 chr5 128649191 128649320 + 2 NA Intergenic Intergenic -111010 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 280-30 chr1 194243376 194243637 + 2 NA Intergenic L1MC5a|LINE|L1 938761 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 348-131 chr14 26019294 26019550 + 2 NA Intergenic Intergenic 534008 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 493-304 chr8 137499898 137500269 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -86495 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 295-136 chr14 78044118 78044314 + 2 NA Intergenic Intergenic -126157 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 145-53 chr3 69853723 69853832 + 2 NA intron (NM_001354608, intron 2 of 10) L1ME3D|LINE|L1 -12447 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 627-37 chr16 3698002 3698441 + 2 NA intron (NM_016292, intron 1 of 17) intron (NM_016292, intron 1 of 17) 19303 NM_001272049 10131 Hs.30345 NM_016292 ENSG00000126602 TRAP1 HSP 75|HSP75|HSP90L|TRAP-1 TNF receptor associated protein 1 protein-coding 486-186 chr21 34014984 34015416 + 2 NA Intergenic AluSc8|SINE|Alu 38818 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 329-524 chr7 9865478 9865684 + 2 NA Intergenic Intergenic 231311 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 245-221 chr21 18895342 18895544 + 2 NA Intergenic Intergenic -135631 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 387-4 chr1 79178202 79178575 + 2 NA Intergenic Intergenic -171658 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 302-95 chr12 16485638 16485798 + 2 NA Intergenic L1MD|LINE|L1 119661 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 334-81 chr11 24087381 24087672 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -409527 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 480-95 chr16 7542944 7543247 + 2 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 210250 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 252-3 chr1 32146180 32146352 + 2 NA intron (NM_012316, intron 1 of 13) L1MB4|LINE|L1 -33409 NM_175852 200081 Hs.17987 NM_175852 ENSG00000084652 TXLNA IL14|TXLN taxilin alpha protein-coding 273-128 chr14 43657839 43658095 + 2 NA Intergenic LTR40a|LTR|ERVL 849316 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 227-59 chr11 31151737 31151918 + 2 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) -159141 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 209-17 chr1 175038675 175038865 + 2 NA Intergenic Intergenic -15315 NR_037606 63931 Hs.654858 NM_022100 ENSG00000120333 MRPS14 COXPD38|DJ262D12.2|HSMRPS14|MRP-S14|S14mt mitochondrial ribosomal protein S14 protein-coding 331-413 chr5 30609159 30609400 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -584407 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 334-588 chrX 73642922 73643121 + 2 NA intron (NM_001300884, intron 3 of 4) L1P1|LINE|L1 79873 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 252-55 chr10 128788946 128789085 + 2 NA Intergenic L1ME3B|LINE|L1 -123818 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 322-114 chr12 13637427 13637725 + 2 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -260831 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 186-4 chr1 78097262 78097416 + 2 NA intron (NM_001304725, intron 3 of 5) intron (NM_001304725, intron 3 of 5) 51373 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 363-468 chr9 25136747 25137083 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 541943 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 695-61 chr21 46029605 46030126 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 48116 NM_001848 1291 Hs.474053 NM_001848 ENSG00000142156 COL6A1 BTHLM1|OPLL|UCHMD1 collagen type VI alpha 1 chain protein-coding 233-290 chr5 30460528 30460700 + 2 NA Intergenic Intergenic 580054 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 307-422 chr6 49725247 49725544 + 2 NA Intergenic L1M4|LINE|L1 -11805 NM_001261822 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 365-370 chr7 31736087 31736341 + 2 NA Intergenic Intergenic 48999 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 284-66 chr11 16755911 16756145 + 2 NA 3' UTR (NM_014267, exon 5 of 5) 3' UTR (NM_014267, exon 5 of 5) 17381 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 245-341 chr8 69027538 69027728 + 2 NA intron (NR_039986, intron 2 of 4) L1MC5|LINE|L1 76557 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 290-123 chr13 108098969 108099249 + 2 NA Intergenic Intergenic 115673 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 593-108 chr4 78373886 78374344 + 2 NA exon (NM_025074, exon 25 of 74) exon (NM_025074, exon 25 of 74) 85130 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 400-224 chr3 105999380 105999734 + 2 NA Intergenic Intergenic -130156 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 352-251 chr2 143589423 143589701 + 2 NA intron (NM_018460, intron 11 of 13) MIRb|SINE|MIR -347505 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 243-75 chr11 87860739 87860899 + 2 NA Intergenic Intergenic -141408 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 378-35 chr1 208616822 208617092 + 2 NA Intergenic L1MA1|LINE|L1 -111731 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 348-81 chr11 54900524 54900721 + 2 NA Intergenic ALR/Alpha|Satellite|centr 193790 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 300-375 chr5 156205504 156205728 + 2 NA Intergenic Intergenic -121141 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 253-339 chr5 111879324 111879508 + 2 NA intron (NM_001142474, intron 2 of 3) L2a|LINE|L2 -33092 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 282-292 chr3 32045801 32046038 + 2 NA Intergenic HY1|scRNA|scRNA -60592 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 341-322 chr3 8586876 8587086 + 2 NA Intergenic MLT2A2|LTR|ERVL 15199 NR_024065 29931 Hs.433151 NM_013343 LINC00312 ERR-10|ERR10|LMCD1DN|LOH3CR2A|NAG-7|NAG7|NCRNA00312 long intergenic non-protein coding RNA 312 ncRNA 420-272 chr7 94695791 94696129 + 2 NA Intergenic AluJr|SINE|Alu 39590 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 432-254 chr6 121820822 121821188 + 2 NA Intergenic Intergenic 385359 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 319-404 chr5 33137052 33137262 + 2 NA Intergenic L1M3b|LINE|L1 -92578 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 340-235 chr2 14855856 14856112 + 2 NA Intergenic L1M1|LINE|L1 223267 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 820-18 chr15 73733131 73733614 + 2 NA Intergenic Intergenic 18103 NM_001039614 388135 Hs.40794 NM_001039614 ENSG00000205363 INSYN1 C15orf59 inhibitory synaptic factor 1 protein-coding 273-379 chr6 7962767 7963032 + 2 NA intron (NR_037616, intron 4 of 12) AluJb|SINE|Alu -23203 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 419-298 chr8 119969040 119969315 + 2 NA intron (NM_022783, intron 4 of 8) intron (NM_022783, intron 4 of 8) 95455 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 448-104 chr2 10773894 10774302 + 2 NA intron (NM_001039362, intron 8 of 13) intron (NM_001039362, intron 8 of 13) 38687 NM_005742 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 328-201 chr16 86986509 86986766 + 2 NA Intergenic Intergenic -71147 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 820-47 chr5 52541519 52542264 + 2 NA Intergenic Intergenic -246025 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 474-102 chr16 60646880 60647334 + 2 NA Intergenic Intergenic -287314 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 138-68 chr5 42541314 42541444 + 2 NA intron (NM_001242400, intron 2 of 10) L2a|LINE|L2 -6664 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 172-106 chr5 117618236 117618336 + 2 NA Intergenic Intergenic -112075 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 214-276 chr6 56977669 56977819 + 2 NA intron (NM_001318539, intron 1 of 3) AluJr|SINE|Alu 22637 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 520-188 chr3 83823903 83824254 + 2 NA Intergenic Intergenic 1045497 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 425-271 chr6 164765400 164765796 + 2 NA Intergenic Intergenic 56465 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 201-75 chr14 47719149 47719308 + 2 NA Intergenic Intergenic 41876 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 423-137 chr2 114584694 114585048 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 123294 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 329-516 chr6 161849377 161849592 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 378507 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 340-48 chr10 52101226 52101478 + 2 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 212776 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 258-322 chr5 63312203 63312405 + 2 NA Intergenic Intergenic 649988 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 304-468 chr6 122955492 122955668 + 2 NA Intergenic L1PA14|LINE|L1 -40655 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 126-8 chr1 242647917 242647992 + 2 NA Intergenic MIR|SINE|MIR -123257 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 510-274 chr8 50215873 50216248 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 51929 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 553-53 chr13 54736037 54736442 + 2 NA Intergenic AluJo|SINE|Alu -424191 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 721-7 chr1 228721118 228721708 + 2 NA intron (NR_037962, intron 1 of 2) intron (NR_037962, intron 1 of 2) -14066 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 505-92 chr14 87195350 87195657 + 2 NA Intergenic L1MC5|LINE|L1 289725 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 366-241 chr2 215675539 215675746 + 2 NA intron (NR_037195, intron 5 of 9) L1ME3Cz|LINE|L1 -42401 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 158-65 chr2 224124382 224124499 + 2 NA Intergenic Intergenic -85121 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 210-124 chr2 50845242 50845421 + 2 NA intron (NM_001330093, intron 4 of 22) MIRb|SINE|MIR -149069 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 346-434 chr6 102054416 102054752 + 2 NA intron (NM_001166247, intron 14 of 16) intron (NM_001166247, intron 14 of 16) 655599 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 378-140 chr14 65325748 65326044 + 2 NA Intergenic L1MA5A|LINE|L1 9287 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 213-308 chrX 94428526 94428665 + 2 NA Intergenic Intergenic 634631 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 403-163 chr2 126415111 126415409 + 2 NA Intergenic L1MA6|LINE|L1 -240675 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 324-520 chr8 49533231 49533494 + 2 NA Intergenic Intergenic -21182 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 304-291 chr20 7076566 7076824 + 2 NA Intergenic L1MB7|LINE|L1 177507 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 541-74 chr15 67427356 67427717 + 2 NA intron (NM_001322471, intron 11 of 13) MIR3|SINE|MIR 93437 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 394-31 chr10 16717705 16717956 + 2 NA intron (NM_152724, intron 6 of 7) intron (NM_152724, intron 6 of 7) 99594 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 408-212 chr3 98399175 98399561 + 2 NA Intergenic L1PBb|LINE|L1 8702 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 144-86 chr5 126263569 126263690 + 2 NA Intergenic Intergenic 21546 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 157-33 chr13 56434682 56434779 + 2 NA Intergenic Intergenic -706188 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 145-90 chr8 144892430 144892561 + 2 NA intron (NM_001363105, intron 1 of 4) intron (NM_001363105, intron 1 of 4) 7810 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 164-85 chr4 47717117 47717256 + 2 NA intron (NM_006587, intron 5 of 21) intron (NM_006587, intron 5 of 21) 64517 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 304-440 chr5 155018698 155018985 + 2 NA TTS (NM_001099293) TTS (NM_001099293) 5086 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 250-218 chr2 116348836 116349023 + 2 NA Intergenic L1ME4b|LINE|L1 1005114 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 606-81 chr2 56297787 56298369 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -112308 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 441-9 chr1 105007865 105008177 + 2 NA Intergenic MER31B|LTR|ERV1 610914 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 574-184 chr8 113767475 113767964 + 2 NA Intergenic AluJr4|SINE|Alu -330780 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 207-31 chr10 21206026 21206218 + 2 NA Intergenic Mam_R4|LINE|Dong-R4 31820 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 343-461 chr6 39866304 39866569 + 2 NA intron (NM_015345, intron 5 of 24) intron (NM_015345, intron 5 of 24) 30944 NR_125831 100505635 Hs.668513 NR_125831 ENSG00000235033 LOC100505635 - uncharacterized LOC100505635 ncRNA 563-133 chr4 19152389 19152772 + 2 NA Intergenic L1PA13|LINE|L1 -1099325 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 526-32 chr11 8866334 8866736 + 2 NA intron (NM_005418, intron 2 of 22) intron (NM_005418, intron 2 of 22) 44416 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 437-242 chr6 118056641 118056956 + 2 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) -29105 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 292-323 chr4 109237391 109237639 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 65143 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 203-182 chr5 92877706 92877868 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 693556 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 207-182 chr3 12448769 12448953 + 2 NA Intergenic Intergenic -35571 NM_001145394 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 343-284 chr2 186188376 186188704 + 2 NA Intergenic Intergenic -102223 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 229-257 chr3 110447060 110447227 + 2 NA Intergenic Intergenic 622816 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 155-43 chr16 26884246 26884335 + 2 NA Intergenic AluJr|SINE|Alu -182637 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 369-293 chr4 58703087 58703279 + 2 NA Intergenic Intergenic -166855 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 290-149 chr15 96813396 96813549 + 2 NA Intergenic Intergenic 30037 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 207-13 chr1 100445263 100445437 + 2 NA intron (NM_001319212, intron 7 of 13) Arthur1A|DNA|hAT-Tip100 -92789 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 297-38 chr1 240308733 240308970 + 2 NA intron (NM_020066, intron 8 of 17) L2a|LINE|L2 216968 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 170-93 chr3 69975794 69975924 + 2 NA Intergenic Intergenic -23885 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 463-229 chr5 35152785 35153128 + 2 NA intron (NM_000949, intron 1 of 9) MIRb|SINE|MIR -34834 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 300-369 chr5 118218377 118218542 + 2 NA intron (NR_104997, intron 2 of 2) L1MC2|LINE|L1 -64115 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 838-37 chr8 87513413 87513938 + 2 NA Intergenic Intergenic 360340 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 175-4 chr1 66345187 66345288 + 2 NA intron (NM_001037339, intron 1 of 9) MIRb|SINE|MIR -9298 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 534-92 chr18 1909699 1910030 + 2 NA Intergenic Intergenic -550235 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 411-33 chr10 82537827 82538199 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -305093 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 344-94 chr11 115812920 115813172 + 2 NA Intergenic L2a|LINE|L2 -52846 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 329-608 chr9 84511665 84511880 + 2 NA Intergenic LTR62|LTR|ERVL -143045 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 305-318 chr21 20431503 20431710 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -172921 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 332-233 chr19 51890025 51890258 + 2 NA 3' UTR (NM_023074, exon 5 of 5) 3' UTR (NM_023074, exon 5 of 5) 2116 NR_110733 101928571 Hs.553920 NR_110733 ENSG00000268095 ZNF649-AS1 - ZNF649 antisense RNA 1 ncRNA 329-388 chr3 169816474 169816795 + 2 NA Intergenic L1M1|LINE|L1 -3730 NM_001363888 151827 Hs.591289 NM_153353 ENSG00000171757 LRRC34 - leucine rich repeat containing 34 protein-coding 312-92 chr11 131233425 131233619 + 2 NA Intergenic Intergenic -137093 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 505-68 chr12 133039264 133039708 + 2 NA intron (NM_001289972, intron 1 of 4) MIR|SINE|MIR 1904 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 335-339 chr3 26143955 26144203 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -270384 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 327-261 chr2 73348496 73348706 + 2 NA Intergenic Intergenic -37157 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 366-219 chr2 137570573 137570933 + 2 NA intron (NM_001316349, intron 16 of 27) L2a|LINE|L2 357179 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 337-17 chr1 104523138 104523443 + 2 NA Intergenic Intergenic 450267 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 349-25 chr1 108155147 108155417 + 2 NA intron (NM_013386, intron 5 of 9).2 intron (NM_013386, intron 5 of 9).2 37553 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 371-298 chr5 2473606 2473823 + 2 NA Intergenic Intergenic -161513 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 710-57 chr22 49612515 49613099 + 2 NA intron (NR_110523, intron 1 of 4) L1ME4a|LINE|L1 44712 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 579-77 chr2 133286858 133287218 + 2 NA intron (NM_207481, intron 4 of 17) L3|LINE|CR1 20843 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 342-9 chr1 59877725 59877997 + 2 NA Intergenic L1M4|LINE|L1 48912 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 299-59 chr10 81601001 81601274 + 2 NA Intergenic Intergenic -274057 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 232-151 chr19 39536358 39536534 + 2 NA Intergenic Intergenic -3594 NM_152361 126272 Hs.135181 NM_152361 ENSG00000176401 EID2B EID-2B|EID-3 EP300 interacting inhibitor of differentiation 2B protein-coding 292-404 chr7 35341246 35341459 + 2 NA intron (NR_038864, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 27497 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 185-175 chr5 161401366 161401517 + 2 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 146683 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 429-87 chr14 21416000 21416378 + 2 NA intron (NM_001170629, intron 5 of 37) intron (NM_001170629, intron 5 of 37) -18788 NR_002916 319103 Hs.680078 NR_002916 ENSG00000200785 SNORD8 RNU6C|mgU6-53 small nucleolar RNA, C/D box 8 snoRNA 387-225 chr3 89755768 89756077 + 2 NA Intergenic L1P3|LINE|L1 648301 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 340-587 chrX 86367616 86367828 + 2 NA intron (NM_001139515, intron 1 of 11) MIR3|SINE|MIR 104754 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 332-91 chr11 55148192 55148451 + 2 NA Intergenic ALR/Alpha|Satellite|centr -113834 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 410-281 chr7 62975390 62975669 + 2 NA Intergenic ALR/Alpha|Satellite|centr 328527 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 321-424 chr4 72616345 72616657 + 2 NA Intergenic L1MB8|LINE|L1 -47280 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 286-424 chr7 62963048 62963286 + 2 NA Intergenic ALR/Alpha|Satellite|centr 340889 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 244-157 chr2 56909157 56909305 + 2 NA Intergenic Intergenic -723461 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 273-408 chr6 169528024 169528254 + 2 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 173890 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 452-295 chr9 109596091 109596391 + 2 NA Intergenic L3|LINE|CR1 -44547 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 318-281 chr2 118407774 118408031 + 2 NA Intergenic L1M8|LINE|L1 195064 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 383-308 chr5 28367081 28367325 + 2 NA Intergenic Intergenic -79538 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 502-184 chr3 103622344 103622661 + 2 NA Intergenic Intergenic -98386 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 280-113 chr13 85450355 85450596 + 2 NA intron (NR_046989, intron 1 of 3) intron (NR_046989, intron 1 of 3) 86872 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 509-101 chr18 68764564 68764925 + 2 NA intron (NM_001093729, intron 3 of 9) intron (NM_001093729, intron 3 of 9) -33336 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 204-3 chr1 55826155 55826309 + 2 NA Intergenic Intergenic 118731 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 260-293 chr3 165811209 165811380 + 2 NA intron (NR_137635, intron 1 of 2) intron (NR_137635, intron 1 of 2) 26129 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 403-104 chr14 72750288 72750612 + 2 NA intron (NM_001280544, intron 3 of 9) intron (NM_001280544, intron 3 of 9) 142199 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 397-301 chr7 32125830 32126094 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -54526 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 350-431 chr6 34160866 34161069 + 2 NA Intergenic FLAM_C|SINE|Alu -5345 NM_001256809 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 261-56 chr11 4746304 4746500 + 2 NA Intergenic L2c|LINE|L2 23536 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 387-81 chr12 52047187 52047486 + 2 NA intron (NM_001202234, intron 2 of 7) intron (NM_001202234, intron 2 of 7) -4066 NM_002135 3164 Hs.524430 NM_002135 ENSG00000123358 NR4A1 GFRP1|HMR|N10|NAK-1|NGFIB|NP10|NUR77|TR3 nuclear receptor subfamily 4 group A member 1 protein-coding 547-83 chr18 3241264 3241640 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -6030 NM_001303048 10627 Hs.190086 NM_006471 ENSG00000101608 MYL12A HEL-S-24|MLC-2B|MLCB|MRCL3|MRLC3|MYL2B myosin light chain 12A protein-coding 117-28 chr4 13843745 13843805 + 2 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) 188596 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 274-363 chr7 112624718 112624857 + 2 NA intron (NR_110158, intron 1 of 7) intron (NR_110158, intron 1 of 7) 2406 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 299-261 chr21 15540823 15541036 + 2 NA Intergenic L2b|LINE|L2 -189005 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 129-8 chr11 73025667 73025742 + 2 NA intron (NM_014824, intron 3 of 19) intron (NM_014824, intron 3 of 19) 116614 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 365-173 chr19 52321938 52322155 + 2 NA exon (NM_001297624, exon 4 of 4) exon (NM_001297624, exon 4 of 4) -14197 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 804-36 chr20 14175712 14176453 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 161530 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 606-135 chr5 126034111 126034606 + 2 NA Intergenic Intergenic -145219 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 316-81 chr10 111653439 111653742 + 2 NA Intergenic Intergenic 530175 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 499-23 chr10 29210889 29211312 + 2 NA Intergenic Intergenic -77970 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 271-6 chr1 63186016 63186236 + 2 NA intron (NR_038252, intron 6 of 11) L1ME2z|LINE|L1 131131 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 299-256 chr20 21920782 21921021 + 2 NA Intergenic LTR16C|LTR|ERVL -133189 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 402-52 chr11 82750632 82750898 + 2 NA Intergenic Intergenic -16901 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 337-189 chr16 8380704 8381010 + 2 NA Intergenic Intergenic 208981 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 341-407 chr4 165769959 165770179 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -26998 NR_121677 101928131 Hs.406479 NR_121677 LOC101928131 - uncharacterized LOC101928131 ncRNA 354-295 chr3 60525301 60525546 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 92447 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 493-202 chr3 83587053 83587377 + 2 NA Intergenic L1MA5A|LINE|L1 1282360 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 252-116 chr14 58950810 58950947 + 2 NA intron (NR_110547, intron 4 of 5) L1MEc|LINE|L1 122590 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 227-335 chr7 19258121 19258278 + 2 NA Intergenic L1PA16|LINE|L1 -112778 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 343-270 chr2 129530738 129531014 + 2 NA Intergenic L1MD2|LINE|L1 -256985 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 312-353 chr3 194051264 194051446 + 2 NA intron (NR_136181, intron 3 of 3) intron (NR_136181, intron 3 of 3) 18174 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 400-196 chr20 63355740 63355943 + 2 NA intron (NR_046317, intron 4 of 5) intron (NR_046317, intron 4 of 5) -4147 NR_110634 100130587 Hs.640129 NR_110634 ENSG00000203900 LOC100130587 - uncharacterized LOC100130587 ncRNA 200-100 chr16 86272537 86272731 + 2 NA intron (NR_104139, intron 2 of 5) intron (NR_104139, intron 2 of 5) 13613 NR_104139 101154687 Hs.640512 NR_104139 LINC01081 TCONS00024764|TCONS_00024764 long intergenic non-protein coding RNA 1081 ncRNA 416-67 chr11 43043869 43044132 + 2 NA Intergenic L1PA13|LINE|L1 225369 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 291-157 chr16 6967123 6967304 + 2 NA intron (NM_001142334, intron 1 of 13) (TCTA)n|Simple_repeat|Simple_repeat 193404 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 388-105 chr14 40703046 40703400 + 2 NA Intergenic L1M2|LINE|L1 -251488 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 121-43 chr3 102757192 102757287 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 322224 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 359-136 chr14 31978814 31979129 + 2 NA Intergenic L1MEf|LINE|L1 34118 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 530-246 chr8 18798543 18798976 + 2 NA intron (NM_015310, intron 8 of 15) intron (NM_015310, intron 8 of 15) 10108 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 513-168 chr21 45694721 45695178 + 2 NA intron (NM_001348238, intron 2 of 16) L1MEg|LINE|L1 26075 NR_145492 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 270-133 chr16 2390361 2390552 + 2 NA intron (NR_003574, intron 8 of 16) MER63D|DNA|hAT-Blackjack -38991 NM_001323538 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 276-468 chr8 139921296 139921512 + 2 NA intron (NM_001160372, intron 19 of 22) L2c|LINE|L2 179131 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 318-73 chr10 76809083 76809305 + 2 NA Intergenic L2a|LINE|L2 -78850 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 204-12 chr1 181585875 181586032 + 2 NA intron (NM_001205293, intron 6 of 47) L2a|LINE|L2 102436 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 200-62 chr13 23378495 23378642 + 2 NA intron (NM_014363, intron 2 of 9) AluSz6|SINE|Alu -3060 NM_001278055 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 477-182 chr20 62436547 62436855 + 2 NA Intergenic L1M4|LINE|L1 -9162 NM_080833 140893 Hs.180374 NM_080833 ENSG00000130701 RBBP8NL C20orf151 RBBP8 N-terminal like protein-coding 313-504 chr7 68233032 68233231 + 2 NA Intergenic AluSx|SINE|Alu 212878 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 746-86 chr8 110162535 110163192 + 2 NA Intergenic Intergenic -187092 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 329-504 chr6 116825846 116826148 + 2 NA intron (NM_148963, intron 1 of 5) L1MA4A|LINE|L1 3060 NM_148963 222545 Hs.266745 NM_148963 ENSG00000173612 GPRC6A GPCR|bA86F4.3 G protein-coupled receptor class C group 6 member A protein-coding 477-206 chr3 108522367 108522825 + 2 NA intron (NM_014981, intron 1 of 41) intron (NM_014981, intron 1 of 41) 6726 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 293-454 chr8 125994512 125994761 + 2 NA Intergenic LTR71B|LTR|ERV1 -43439 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 462-3 chr1 55388554 55388947 + 2 NA Intergenic L1M4a1|LINE|L1 163109 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 314-80 chr10 125875359 125875530 + 2 NA intron (NM_018180, intron 1 of 10) L1MC4|LINE|L1 5848 NM_018180 55760 Hs.370292 NM_018180 ENSG00000089876 DHX32 DDX32|DHLP1 DEAH-box helicase 32 (putative) protein-coding 566-146 chr4 116261471 116261912 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -38034 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 214-99 chr14 63260864 63261011 + 2 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 56494 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 786-60 chr7 25529656 25530368 + 2 NA Intergenic MIR3|SINE|MIR 133128 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 287-355 chr6 79807393 79807552 + 2 NA intron (NR_131786, intron 2 of 4) intron (NR_131786, intron 2 of 4) 4774 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 736-46 chr20 12734713 12735266 + 2 NA Intergenic Intergenic 201974 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 472-151 chr2 46083618 46083922 + 2 NA intron (NM_005400, intron 10 of 14) MER5A|DNA|hAT-Charlie -213637 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 386-7 chr1 71723694 71724039 + 2 NA intron (NM_173808, intron 3 of 6) MER21C|LTR|ERVL 113146 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 294-29 chr10 15709349 15709621 + 2 NA intron (NM_001291494, intron 2 of 28) intron (NM_001291494, intron 2 of 28) 10437 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 406-66 chr13 72767565 72767895 + 2 NA intron (NM_014953, intron 14 of 20) MER3|DNA|hAT-Charlie 14170 NM_001128226 22894 Hs.744104 NM_014953 ENSG00000083520 DIS3 2810028N01Rik|EXOSC11|KIAA1008|RRP44|dis3p DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease protein-coding 360-227 chr2 113998963 113999180 + 2 NA intron (NR_148508, intron 1 of 1) intron (NR_148508, intron 1 of 1) -19087 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 314-160 chr14 32157550 32157736 + 2 NA 3' UTR (NM_001173, exon 7 of 7) 3' UTR (NM_001173, exon 7 of 7) -44402 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 264-337 chr5 122538238 122538432 + 2 NA Intergenic Intergenic 46265 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 385-307 chr5 122257756 122258072 + 2 NA Intergenic L1PB3|LINE|L1 -53777 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 322-328 chr3 78319399 78319635 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -270554 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 406-299 chr8 115331409 115331808 + 2 NA Intergenic Intergenic 336405 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 190-179 chr8 123266993 123267107 + 2 NA intron (NM_001017926, intron 2 of 3) intron (NM_001017926, intron 2 of 3) 7236 NM_007222 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 243-158 chr16 80996390 80996581 + 2 NA intron (NR_147842, intron 1 of 2) intron (NR_147842, intron 1 of 2) 1191 NM_001351973 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 474-112 chr17 70846401 70846773 + 2 NA Intergenic Intergenic 355592 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 340-305 chr20 869780 870073 + 2 NA TTS (NM_001322809) TTS (NM_001322809) 25283 NM_031424 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 346-365 chr4 132158353 132158616 + 2 NA Intergenic L1PB1|LINE|L1 393646 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 306-139 chr14 33073795 33074070 + 2 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 135053 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 244-98 chr14 71742876 71743066 + 2 NA Intergenic Intergenic 156673 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 446-23 chr1 200377926 200378176 + 2 NA Intergenic AluSz|SINE|Alu -4259 NR_040064 554279 Hs.434694 NR_040064 ENSG00000203721 LINC00862 C1orf98|SMIM16 long intergenic non-protein coding RNA 862 ncRNA 361-163 chr16 65985531 65985719 + 2 NA Intergenic L1PB3|LINE|L1 -381066 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 374-86 chr13 54832005 54832282 + 2 NA Intergenic L1MA3|LINE|L1 -342311 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 492-59 chr12 31907949 31908297 + 2 NA Intergenic HERVFH19-int|LTR|ERV1 -20920 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 441-91 chr16 6820257 6820535 + 2 NA intron (NM_001142334, intron 1 of 13) AluJr|SINE|Alu 46587 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 331-262 chr2 51261477 51261750 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 229012 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 627-83 chr4 159288309 159288836 + 2 NA intron (NM_001351727, intron 1 of 24) L2a|LINE|L2 20763 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 298-465 chr8 108946002 108946195 + 2 NA Intergenic L1ME3G|LINE|L1 -140530 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 572-150 chr6 23605151 23605462 + 2 NA Intergenic L1MC2|LINE|L1 -520909 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 334-290 chr2 165839065 165839288 + 2 NA Intergenic Intergenic 32765 NR_045375 100506124 Hs.709870 NR_045375 LOC100506124 - uncharacterized LOC100506124 ncRNA 201-12 chr1 166299562 166299726 + 2 NA Intergenic Intergenic -132889 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 241-53 chr10 111886336 111886503 + 2 NA Intergenic Intergenic 297346 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 219-83 chr12 133188970 133189154 + 2 NA intron (NM_001165883, intron 3 of 3) L1MD|LINE|L1 7567 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 208-250 chr7 92067925 92068049 + 2 NA intron (NM_147185, intron 26 of 49) intron (NM_147185, intron 26 of 49) 66490 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 432-68 chr12 115705843 115706211 + 2 NA Intergenic Intergenic 442627 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 318-303 chr2 205273013 205273321 + 2 NA intron (NM_057177, intron 16 of 21) intron (NM_057177, intron 16 of 21) -409333 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 446-147 chr2 65998796 65999178 + 2 NA Intergenic Intergenic 359341 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 232-81 chr12 109826091 109826225 + 2 NA intron (NM_021625, intron 1 of 15) AluJb|SINE|Alu -7190 NR_039718 100616454 NR_039718 ENSG00000263510 MIR4497 mir-4497 microRNA 4497 ncRNA 154-98 chr7 8126155 8126264 + 2 NA intron (NR_146928, intron 13 of 14) intron (NR_146928, intron 13 of 14) 135843 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 332-66 chr10 73248499 73248746 + 2 NA TTS (NM_016065) TTS (NM_016065) 1255 NR_038373 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 317-470 chr7 145281128 145281330 + 2 NA Intergenic L1MA2|LINE|L1 -445176 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 183-160 chr8 105324192 105324327 + 2 NA intron (NM_001362837, intron 1 of 7) (TATATC)n|Simple_repeat|Simple_repeat 4716 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 240-308 chr3 191142305 191142496 + 2 NA Intergenic Intergenic -56841 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 524-54 chr13 59201680 59202144 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -810806 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 248-322 chr5 106538070 106538214 + 2 NA Intergenic L1MA7|LINE|L1 472872 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 283-311 chr4 24634733 24634923 + 2 NA Intergenic Intergenic -50274 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 507-231 chr7 31941757 31942103 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 128477 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 257-103 chr13 92466324 92466559 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -23722 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 440-211 chr5 164750142 164750502 + 2 NA Intergenic Intergenic 280043 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 642-43 chr18 36600521 36601012 + 2 NA intron (NM_001281740, intron 7 of 28) intron (NM_001281740, intron 7 of 28) 62652 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 193-202 chr8 119081879 119082015 + 2 NA intron (NM_006438, intron 1 of 5) L2a|LINE|L2 -13165 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 295-348 chr4 72612643 72612903 + 2 NA Intergenic Intergenic -43552 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 506-175 chr3 2962922 2963310 + 2 NA intron (NM_175607, intron 13 of 24) L3b|LINE|CR1 70901 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 211-177 chr3 2120105 2120217 + 2 NA intron (NR_046555, intron 2 of 2) intron (NR_046555, intron 2 of 2) 21295 NM_175607 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 436-274 chr6 159689667 159689993 + 2 NA intron (NM_001024465, intron 2 of 5) AluSz|SINE|Alu 3411 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 139-87 chr8 87499910 87499990 + 2 NA Intergenic Intergenic 374065 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 585-140 chr6 92576462 92576905 + 2 NA Intergenic L1PA11|LINE|L1 842876 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 560-141 chr5 155875242 155875602 + 2 NA Intergenic Intergenic -451335 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 358-501 chr8 135968580 135968781 + 2 NA Intergenic Intergenic 511224 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 227-57 chr11 11471675 11471881 + 2 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) -118528 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 276-126 chr13 54356935 54357138 + 2 NA Intergenic Intergenic -44988 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 198-63 chr14 49014079 49014218 + 2 NA Intergenic L2a|LINE|L2 572232 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 242-263 chr4 65980913 65981094 + 2 NA Intergenic L1PA16|LINE|L1 -295821 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 290-381 chr6 40532873 40533028 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 54414 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 447-258 chr8 46521208 46521577 + 2 NA Intergenic ALR/Alpha|Satellite|centr 96251 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 403-88 chr14 21487977 21488309 + 2 NA intron (NM_001303523, intron 2 of 7) intron (NM_001303523, intron 2 of 7) 10948 NM_014828 9878 Hs.555910 NM_014828 ENSG00000092203 TOX4 C14orf92|KIAA0737|LCP1|MIG7 TOX high mobility group box family member 4 protein-coding 242-224 chr22 35113034 35113247 + 2 NA Intergenic MIRb|SINE|MIR 46982 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 247-311 chr5 4742288 4742446 + 2 NA Intergenic Intergenic -31114 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 459-48 chr11 29825848 29826182 + 2 NA Intergenic Intergenic 156378 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 255-419 chr8 65237072 65237300 + 2 NA Intergenic Intergenic -56846 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 456-10 chr1 85908946 85909320 + 2 NA intron (NM_152890, intron 26 of 59) intron (NM_152890, intron 26 of 59) -200700 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 666-92 chr5 23361028 23361588 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -146301 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 271-3 chr1 11581228 11581405 + 2 NA Intergenic Intergenic -28215 NR_104624 101929181 Hs.568616 NR_104624 ENSG00000235643 LINC01647 - long intergenic non-protein coding RNA 1647 ncRNA 550-114 chr2 81801077 81801568 + 2 NA Intergenic Intergenic -334376 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 296-439 chr7 64037233 64037478 + 2 NA Intergenic Intergenic -7253 NR_039987 100506050 Hs.405628 NR_039987 ENSG00000228564 LINC01005 - long intergenic non-protein coding RNA 1005 ncRNA 336-391 chr4 30479516 30479761 + 2 NA Intergenic MIRb|SINE|MIR -240731 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 615-141 chr8 115725092 115725565 + 2 NA Intergenic Intergenic -56353 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 301-430 chr7 159331666 159331899 + 2 NA Intergenic Intergenic -186825 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 335-310 chr21 19760391 19760651 + 2 NA Intergenic Intergenic 139234 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 233-182 chr2 140866852 140867051 + 2 NA intron (NM_018557, intron 27 of 90) intron (NM_018557, intron 27 of 90) -280266 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 248-292 chr4 139639084 139639296 + 2 NA Intergenic LTR33A_|LTR|ERVL -26578 NM_001204366 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 338-374 chr4 33635693 33635877 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 404108 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 309-233 chr2 7943360 7943595 + 2 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) 33337 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 350-422 chr5 152981207 152981464 + 2 NA Intergenic HAL1|LINE|L1 -8986 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 294-296 chr3 65305904 65306120 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -587804 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 395-316 chr7 82946505 82946788 + 2 NA intron (NM_033026, intron 6 of 24) L2a|LINE|L2 216238 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 361-247 chr2 218166524 218166763 + 2 NA intron (NM_000634, intron 1 of 1) MamTip2|DNA|hAT-Tip100 319 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 369-202 chr2 99945597 99945956 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 159807 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 329-267 chr2 35219017 35219233 + 2 NA Intergenic LTR77|LTR|ERV1 -252280 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 434-51 chr11 85553246 85553546 + 2 NA intron (NM_001142699, intron 3 of 27) L2a|LINE|L2 73874 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 486-89 chr14 74060517 74060798 + 2 NA exon (NM_001278594, exon 12 of 12) exon (NM_001278594, exon 12 of 12) 23796 NM_001278593 4329 Hs.293970 NM_005589 ENSG00000119711 ALDH6A1 MMSADHA|MMSDH aldehyde dehydrogenase 6 family member A1 protein-coding 260-419 chr8 3669060 3669223 + 2 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -940690 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 229-400 chr8 125808508 125808734 + 2 NA Intergenic Intergenic 142576 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 368-198 chr17 81014449 81014726 + 2 NA Intergenic L1MEf|LINE|L1 20132 NR_026857 440465 Hs.448889 NM_001004336 ENSG00000226137 BAIAP2-DT BAIAP2-AS1|lnc-BAIAP2 BAIAP2 divergent transcript ncRNA 198-130 chr2 125185419 125185578 + 2 NA Intergenic Intergenic 932487 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 537-152 chr3 21370726 21371259 + 2 NA Intergenic L1MCa|LINE|L1 -34734 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 395-129 chr16 74089541 74089864 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 125819 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 347-465 chr7 42008980 42009191 + 2 NA intron (NM_000168, intron 10 of 14) L3|LINE|CR1 228124 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 446-25 chr1 208417161 208417540 + 2 NA Intergenic Intergenic -172966 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 768-38 chr4 180429493 180430230 + 2 NA Intergenic Intergenic 729288 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 163-74 chr20 46908259 46908408 + 2 NA intron (NM_172110, intron 1 of 13) L2a|LINE|L2 13490 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 502-174 chr3 42480439 42480915 + 2 NA Intergenic L1PBa|LINE|L1 -8622 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 276-10 chr1 61531616 61531843 + 2 NA Intergenic Intergenic -122513 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 416-292 chr6 61797798 61798099 + 2 NA intron (NR_146874, intron 6 of 13) L1PA15|LINE|L1 223818 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 334-243 chr19 57146119 57146396 + 2 NA Intergenic Intergenic -1055 NM_052882 114026 Hs.348622 NM_052882 ENSG00000141946 ZIM3 ZNF264|ZNF657 zinc finger imprinted 3 protein-coding 302-201 chr2 21956172 21956384 + 2 NA Intergenic L1M5|LINE|L1 -245626 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 136-73 chr5 162859717 162859802 + 2 NA Intergenic L1MB8|LINE|L1 -577812 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 527-186 chr4 41896440 41896807 + 2 NA Intergenic Intergenic -14012 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 274-337 chr6 123462478 123462730 + 2 NA intron (NR_110844, intron 1 of 2) intron (NR_110844, intron 1 of 2) 23000 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 515-187 chr4 101691875 101692385 + 2 NA Intergenic Intergenic -98477 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 408-122 chr15 91700521 91700869 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -153013 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 372-242 chr2 95126509 95126823 + 2 NA Intergenic L1MB1|LINE|L1 -4639 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 426-233 chr5 52068541 52068854 + 2 NA Intergenic L1MA6|LINE|L1 60666 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 185-67 chr15 25907438 25907576 + 2 NA intron (NR_040082, intron 1 of 4) (TA)n|Simple_repeat|Simple_repeat 5147 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 561-33 chr11 34705468 34705758 + 2 NA Intergenic L1MA2|LINE|L1 73047 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 272-78 chr11 97344360 97344620 + 2 NA Intergenic Intergenic 836065 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 190-201 chrX 98440821 98441002 + 2 NA Intergenic L1PB1|LINE|L1 -876376 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 368-41 chr10 18980618 18980958 + 2 NA Intergenic AluSz6|SINE|Alu -68013 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 376-65 chr11 10870112 10870465 + 2 NA intron (NR_034137, intron 2 of 2) AluSc|SINE|Alu 12071 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 592-94 chr2 177952606 177953122 + 2 NA intron (NM_001077197, intron 3 of 20) L2b|LINE|L2 -30027 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 654-113 chr7 37102846 37103345 + 2 NA intron (NM_001206480, intron 14 of 21) MIRb|SINE|MIR 105299 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 477-97 chr14 87768286 87768654 + 2 NA Intergenic HAL1|LINE|L1 -113176 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 154-107 chr8 120267022 120267100 + 2 NA intron (NM_021110, intron 25 of 47) intron (NM_021110, intron 25 of 47) 141959 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 279-118 chr15 90745299 90745538 + 2 NA intron (NM_001287246, intron 2 of 22) AluJb|SINE|Alu 28072 NM_001287247 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 591-37 chr14 62950759 62951284 + 2 NA intron (NM_139318, intron 6 of 10) intron (NM_139318, intron 6 of 10) 94437 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 578-117 chr3 109497489 109497877 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 87693 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 189-184 chr7 4918064 4918237 + 2 NA intron (NR_072989, intron 3 of 8) MLT1F|LTR|ERVL-MaLR -34434 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 445-107 chr19 30379405 30379769 + 2 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 7203 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 376-95 chr13 87999734 88000080 + 2 NA Intergenic L1PB4|LINE|L1 -142960 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 333-12 chr1 49912531 49912753 + 2 NA intron (NM_001323575, intron 1 of 12) MIR|SINE|MIR 111312 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 363-58 chr10 76099441 76099657 + 2 NA intron (NM_001305581, intron 5 of 6) L1MCc|LINE|L1 316788 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 505-131 chr2 12119262 12119678 + 2 NA intron (NR_110197, intron 3 of 3) intron (NR_110197, intron 3 of 3) -79660 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 384-103 chr14 28544041 28544357 + 2 NA Intergenic AluJb|SINE|Alu 221120 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 213-239 chr5 141042281 141042428 + 2 NA Intergenic Intergenic -9022 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 434-99 chr16 8465027 8465425 + 2 NA Intergenic Intergenic 124612 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 301-41 chr10 57018715 57018969 + 2 NA Intergenic Intergenic 285717 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 623-3 chr1 36676263 36676676 + 2 NA Intergenic Intergenic -193155 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 453-166 chr3 102362694 102363008 + 2 NA Intergenic Intergenic -72164 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 444-199 chr5 88473818 88474097 + 2 NA Intergenic Intergenic -34867 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 231-94 chr14 60580488 60580682 + 2 NA Intergenic L1MEd|LINE|L1 -58631 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 337-485 chr6 53652652 53652949 + 2 NA intron (NM_001003760, intron 2 of 2) intron (NM_001003760, intron 2 of 2) 12956 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 376-310 chr5 20144098 20144430 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -156064 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 532-275 chr8 104116159 104116618 + 2 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -106947 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 459-38 chr10 82291887 82292189 + 2 NA intron (NM_001370082, intron 3 of 10) L1MD1|LINE|L1 -59118 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 186-107 chr3 57414151 57414258 + 2 NA intron (NM_001366028, intron 38 of 73) intron (NM_001366028, intron 38 of 73) -121519 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 325-251 chr19 51819064 51819387 + 2 NA intron (NR_163433, intron 9 of 11) L2a|LINE|L2 24068 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 204-214 chr4 48706208 48706325 + 2 NA intron (NM_015030, intron 2 of 63) L1MB3|LINE|L1 74033 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 253-153 chr16 83079183 83079386 + 2 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -88986 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 235-365 chr8 115017659 115017825 + 2 NA Intergenic L1PB4|LINE|L1 650271 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 253-284 chr4 29784196 29784366 + 2 NA Intergenic Intergenic 569989 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 248-385 chr7 88268096 88268263 + 2 NA Intergenic Intergenic 38715 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 323-2 chr1 30628142 30628308 + 2 NA Intergenic L2|LINE|L2 -90547 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 334-348 chr3 73921710 73922008 + 2 NA Intergenic Intergenic 112615 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 328-486 chr6 10133183 10133458 + 2 NA Intergenic L1M4b|LINE|L1 -271182 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 288-43 chr10 33613783 33614015 + 2 NA Intergenic Intergenic 158781 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 720-49 chr2 224253039 224253486 + 2 NA Intergenic Intergenic 148732 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 287-242 chr3 18972915 18973167 + 2 NA Intergenic L1MA3|LINE|L1 -175469 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 370-477 chr9 84208834 84209060 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 131811 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 307-511 chr9 27436726 27436976 + 2 NA intron (NM_024761, intron 2 of 3) L2a|LINE|L2 -87463 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 421-272 chr7 10817591 10817887 + 2 NA Intergenic L2-1_AMi|LINE|L2 -37795 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 303-365 chr5 96008705 96009000 + 2 NA intron (NR_130776, intron 1 of 4) L1PA16|LINE|L1 46851 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 310-278 chr2 212719140 212719409 + 2 NA Intergenic Intergenic -76057 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 293-275 chr3 134525618 134525804 + 2 NA intron (NR_148353, intron 3 of 12) L1PA8A|LINE|L1 39538 NM_001353111 80254 Hs.443301 NM_025180 ENSG00000182923 CEP63 SCKL6 centrosomal protein 63 protein-coding 405-249 chr5 64353496 64353808 + 2 NA intron (NM_001113561, intron 7 of 7) intron (NM_001113561, intron 7 of 7) -152363 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 277-416 chr8 91705843 91706029 + 2 NA Intergenic Intergenic 311744 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 453-69 chr14 53539736 53540160 + 2 NA Intergenic Intergenic 386594 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 333-318 chr21 19460546 19460823 + 2 NA Intergenic Intergenic 439071 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 411-268 chr7 24149872 24150239 + 2 NA Intergenic L1ME1|LINE|L1 -134135 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 298-238 chr2 175198905 175199136 + 2 NA Intergenic Intergenic -17310 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 182-150 chr6 94689011 94689122 + 2 NA Intergenic Intergenic 888385 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 297-411 chr6 96804568 96804806 + 2 NA intron (NM_030784, intron 1 of 1) HAL1|LINE|L1 32790 NM_001143957 81491 Hs.221364 NM_030784 ENSG00000112218 GPR63 PSP24(beta)|PSP24B G protein-coupled receptor 63 protein-coding 202-272 chr9 90454332 90454480 + 2 NA Intergenic Intergenic -20917 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 532-236 chr7 9677777 9678147 + 2 NA Intergenic Intergenic 43692 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 308-327 chr4 44206363 44206608 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 189423 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 291-54 chr10 65664425 65664649 + 2 NA intron (NR_120647, intron 3 of 5) LOR1-int|LTR|ERV1 93112 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 312-145 chr14 55087590 55087873 + 2 NA Intergenic Intergenic 36084 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 217-65 chr11 29701662 29701799 + 2 NA Intergenic Intergenic 82928 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 291-387 chr6 99387773 99387993 + 2 NA intron (NM_017421, intron 1 of 6) L1MD|LINE|L1 6312 NM_017421 51805 Hs.713623 NM_017421 ENSG00000132423 COQ3 DHHBMT|DHHBMTASE|UG0215E05|bA9819.1 coenzyme Q3, methyltransferase protein-coding 323-297 chr20 37692197 37692420 + 2 NA Intergenic Intergenic -1647 NM_001281495 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 653-3 chr1 85840011 85840527 + 2 NA intron (NR_146340, intron 44 of 60) intron (NR_146340, intron 44 of 60) -131836 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 325-83 chr10 106853746 106853991 + 2 NA intron (NM_001206569, intron 2 of 25) L1MC1|LINE|L1 310838 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 220-190 chr2 191247864 191248030 + 2 NA intron (NM_012223, intron 1 of 28) intron (NM_012223, intron 1 of 28) 2543 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 316-367 chr3 151482642 151482884 + 2 NA Intergenic L1MA9|LINE|L1 -24054 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 363-335 chr4 89984576 89984889 + 2 NA Intergenic Intergenic 89878 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 331-263 chr2 52438821 52439099 + 2 NA Intergenic Intergenic 68312 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 391-12 chr1 105828106 105828429 + 2 NA Intergenic Intergenic 199986 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 301-284 chr3 99374713 99374867 + 2 NA Intergenic Intergenic -263804 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 392-34 chr10 130545748 130545980 + 2 NA Intergenic Intergenic 409455 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 248-62 chr11 33193507 33193683 + 2 NA Intergenic AluJb|SINE|Alu 31938 NR_034027 338739 Hs.423476 NR_034027 ENSG00000247151 CSTF3-DT CSTF3-AS1 CSTF3 divergent transcript ncRNA 308-174 chr16 63247455 63247694 + 2 NA Intergenic Intergenic -1211136 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 250-414 chr7 158158048 158158226 + 2 NA intron (NM_130843, intron 6 of 21) intron (NM_130843, intron 6 of 21) 303552 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 433-222 chr5 44384107 44384478 + 2 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -4440 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 249-166 chr18 61187535 61187721 + 2 NA Intergenic Intergenic -145802 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 493-155 chr2 101134305 101134638 + 2 NA intron (NM_001102426, intron 1 of 19) MLT1A|LTR|ERVL-MaLR 16976 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 350-264 chr20 1561327 1561530 + 2 NA Intergenic L1MC3|LINE|L1 -3723 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 585-155 chr8 246544 247027 + 2 NA 3' UTR (NM_001287399, exon 6 of 6) 3' UTR (NM_001287399, exon 6 of 6) 14329 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 279-316 chr5 27402475 27402723 + 2 NA Intergenic Intergenic -69693 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 343-528 chr8 25707802 25708095 + 2 NA Intergenic Intergenic 248715 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 320-291 chr2 200057892 200058086 + 2 NA Intergenic L1PA15|LINE|L1 -102498 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 572-34 chr12 8576577 8576991 + 2 NA Intergenic Intergenic -35879 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 680-115 chr8 107879897 107880491 + 2 NA Intergenic Intergenic 201745 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 188-202 chr8 75733472 75733604 + 2 NA Intergenic Intergenic 193570 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 285-358 chr5 159914866 159915053 + 2 NA Intergenic MIRb|SINE|MIR -1523 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 297-106 chr12 28373600 28373838 + 2 NA intron (NM_001330367, intron 7 of 11) THE1D|LTR|ERVL-MaLR -182981 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 558-142 chr3 147931509 147931923 + 2 NA Intergenic Intergenic -146443 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 499-271 chr8 127358159 127358470 + 2 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -42085 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 323-525 chr8 14853276 14853504 + 2 NA TTS (NR_029875) TTS (NR_029875) 120 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 264-75 chr11 40717276 40717430 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -424223 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 325-471 chr6 28020154 28020407 + 2 NA Intergenic MIR|SINE|MIR -53036 NM_001355425 442179 NM_001355425 OR1F12 OR1F12P|OR1F12Q|OR6-12|hs6M1-35P olfactory receptor family 1 subfamily F member 12 protein-coding 535-163 chr3 54539478 54539934 + 2 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 100151 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 335-437 chr5 129258565 129258829 + 2 NA Intergenic L1M4|LINE|L1 138450 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 415-132 chr2 123832710 123833027 + 2 NA Intergenic L1M4c|LINE|L1 192306 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 525-56 chr12 40607859 40608271 + 2 NA Intergenic Intergenic -84374 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 287-128 chr14 40693869 40694063 + 2 NA Intergenic MER61D|LTR|ERV1 -260745 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 370-330 chr4 32224988 32225272 + 2 NA Intergenic AluSz|SINE|Alu -125908 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 441-262 chr8 74817718 74817993 + 2 NA Intergenic Intergenic -6679 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 473-45 chr11 43635198 43635638 + 2 NA Intergenic Intergenic -45320 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 388-177 chr20 1059815 1060189 + 2 NA Intergenic Intergenic -53227 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 278-122 chr14 82637754 82637939 + 2 NA Intergenic Intergenic -4786 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 245-244 chr3 193955684 193955871 + 2 NA Intergenic L1MA5|LINE|L1 38461 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 341-189 chr16 69509998 69510218 + 2 NA Intergenic AluSq|SINE|Alu 55760 NR_031719 100302119 NR_031719 ENSG00000223109 MIR1538 MIRN1538|hsa-mir-1538 microRNA 1538 ncRNA 300-15 chr1 118718190 118718444 + 2 NA Intergenic Intergenic 270026 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 333-299 chr20 12367506 12367812 + 2 NA Intergenic Intergenic 449766 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 381-313 chr5 68905364 68905587 + 2 NA Intergenic Intergenic 124452 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 500-112 chr18 4782818 4783249 + 2 NA Intergenic L1MA9|LINE|L1 -298149 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 256-175 chr18 77999599 77999810 + 2 NA Intergenic Intergenic -5977 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 222-276 chr4 155197108 155197258 + 2 NA Intergenic Intergenic -11453 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 335-324 chr22 26156483 26156681 + 2 NA Intergenic Intergenic -12880 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 364-140 chr15 24683914 24684248 + 2 NA TTS (NM_018958) TTS (NM_018958) 8687 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 348-125 chr13 93076038 93076352 + 2 NA Intergenic Intergenic 30854 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 357-135 chr15 94467158 94467407 + 2 NA intron (NM_018349, intron 19 of 21) intron (NM_018349, intron 19 of 21) 111352 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 471-258 chr7 153222703 153223121 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 189322 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 351-209 chr2 22968151 22968410 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -416899 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 297-153 chr15 94877955 94878184 + 2 NA Intergenic MER61-int|LTR|ERV1 22706 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 317-148 chr14 62294929 62295118 + 2 NA Intergenic L1ME3B|LINE|L1 -155050 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 368-93 chr12 10522971 10523306 + 2 NA TTS (NM_001357731) TTS (NM_001357731) 17245 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 263-298 chr4 99474971 99475197 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -35937 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 349-211 chr18 2885593 2885864 + 2 NA intron (NM_032048, intron 3 of 7) AluSx1|SINE|Alu 38722 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 649-64 chr20 42960608 42961183 + 2 NA intron (NM_133170, intron 1 of 31) L1M6|LINE|L1 -7848 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 290-235 chr2 229004419 229004656 + 2 NA Intergenic Intergenic 227555 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 487-246 chr6 81761189 81761521 + 2 NA Intergenic Intergenic -8674 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 364-296 chr4 30867053 30867337 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 146826 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 310-466 chr6 163353098 163353351 + 2 NA Intergenic Intergenic -6191 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 175-115 chr4 94818221 94818357 + 2 NA intron (NM_001203, intron 1 of 12) MIR|SINE|MIR 60334 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 421-191 chr3 117576213 117576590 + 2 NA Intergenic Intergenic 114524 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 329-374 chr3 100959873 100960110 + 2 NA intron (NM_001349332, intron 1 of 35) L1MCc|LINE|L1 33499 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 366-455 chr8 135091123 135091399 + 2 NA Intergenic Intergenic -142870 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 283-37 chr1 219002619 219002798 + 2 NA intron (NR_031644, intron 6 of 6) L1MEc|LINE|L1 -84197 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 135-62 chr6 86742861 86742990 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -194603 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 136-78 chr6 152100785 152100910 + 2 NA 3' UTR (NM_001291241, exon 9 of 9) 3' UTR (NM_001291241, exon 9 of 9) 67440 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 314-40 chr1 209297760 209297954 + 2 NA Intergenic Intergenic -27599 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 510-280 chr8 120387399 120387744 + 2 NA Intergenic AluJo|SINE|Alu 57579 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 309-220 chr18 74095580 74095790 + 2 NA intron (NM_001142958, intron 8 of 9) Tigger1|DNA|TcMar-Tigger 52149 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 268-296 chr4 155293272 155293495 + 2 NA Intergenic MER4D1|LTR|ERV1 -60833 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 232-196 chr2 173392003 173392223 + 2 NA Intergenic Intergenic 37241 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 357-300 chr4 20358881 20359192 + 2 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) -33153 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 233-55 chr11 40772706 40772878 + 2 NA intron (NM_020929, intron 1 of 4) L1MA3|LINE|L1 -479662 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 289-432 chr7 15238636 15238794 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -263857 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 343-331 chr3 40198173 40198447 + 2 NA intron (NM_001284424, intron 10 of 15) (TTGT)n|Simple_repeat|Simple_repeat 98299 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 260-422 chr8 21148507 21148703 + 2 NA Intergenic L1MC|LINE|L1 -149634 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 199-180 chr4 76514510 76514688 + 2 NA intron (NM_020859, intron 1 of 10) L1MB7|LINE|L1 -58969 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 430-349 chrX 127212207 127212619 + 2 NA Intergenic Intergenic 392684 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 316-8 chr1 57993773 57993986 + 2 NA intron (NM_001353980, intron 1 of 5) L2b|LINE|L2 133298 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 344-368 chr4 155014583 155014833 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -193928 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 166-78 chr3 141669304 141669435 + 2 NA intron (NR_136190, intron 2 of 7) L1MEg|LINE|L1 6170 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 496-124 chr19 27732909 27733250 + 2 NA Intergenic ALR/Alpha|Satellite|centr -60352 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 331-283 chr2 132544032 132544220 + 2 NA intron (NM_001508, intron 1 of 1) LTR39|LTR|ERV1 110415 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 186-27 chr11 118410398 118410518 + 2 NA TTS (NR_033759) TTS (NR_033759) 8357 NR_046369 100131626 Hs.721614 NR_046369 LOC100131626 - uncharacterized LOC100131626 ncRNA 370-377 chr5 121839501 121839735 + 2 NA Intergenic Intergenic -12264 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 846-30 chr3 6305628 6306139 + 2 NA Intergenic L1PA16|LINE|L1 499566 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 299-164 chr16 88543307 88543571 + 2 NA Intergenic L1MEd|LINE|L1 -12386 NR_148997 100128882 Hs.722546 NR_148997 ENSG00000261744 LOC100128882 - uncharacterized LOC100128882 ncRNA 276-71 chr11 7010878 7011056 + 2 NA intron (NM_013249, intron 1 of 2) L1ME3D|LINE|L1 9379 NM_001354831 7761 Hs.445849 NM_013249 ENSG00000149050 ZNF214 BAZ-1|BAZ1 zinc finger protein 214 protein-coding 703-95 chr8 91771225 91771631 + 2 NA Intergenic Intergenic 246252 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 430-229 chr5 5667472 5667722 + 2 NA Intergenic Intergenic 244920 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 479-99 chr2 20748411 20748776 + 2 NA intron (NM_021925, intron 4 of 6) intron (NM_021925, intron 4 of 6) 74508 NM_001282720 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 369-21 chr1 204872194 204872555 + 2 NA intron (NM_001160332, intron 1 of 27) intron (NM_001160332, intron 1 of 27) 43720 NM_001160332 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 506-15 chr1 157283476 157283822 + 2 NA Intergenic Intergenic -145058 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 322-482 chr7 26643451 26643639 + 2 NA intron (NR_161202, intron 3 of 3) MER21A|LTR|ERVL 5674 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 304-258 chr2 80346143 80346354 + 2 NA intron (NM_001282599, intron 1 of 11) MSTB|LTR|ERVL-MaLR 32869 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 470-80 chr15 51132824 51133154 + 2 NA intron (NR_146310, intron 1 of 2) MER102c|DNA|hAT-Charlie -27713 NM_207381 388121 Hs.306343 NM_207381 ENSG00000183578 TNFAIP8L3 TIPE3 TNF alpha induced protein 8 like 3 protein-coding 382-392 chr7 125968064 125968340 + 2 NA Intergenic AluSx1|SINE|Alu -703911 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 219-346 chr8 248190 248384 + 2 NA TTS (NM_001287399) TTS (NM_001287399) 15831 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 339-419 chr4 105487416 105487733 + 2 NA Intergenic L1M4|LINE|L1 -13504 NM_176866 27068 Hs.654957 NM_006903 ENSG00000138777 PPA2 HSPC124|SCFAI|SCFI|SID6-306 pyrophosphatase (inorganic) 2 protein-coding 392-205 chr3 96251786 96252070 + 2 NA Intergenic Intergenic -108036 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 367-120 chr14 45957109 45957461 + 2 NA Intergenic L2a|LINE|L2 -106874 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 517-91 chr16 18005503 18005996 + 2 NA Intergenic AluSz|SINE|Alu 326913 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 424-250 chr6 166827635 166827882 + 2 NA intron (NM_001318936, intron 2 of 22) L1MA9|LINE|L1 34767 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 633-99 chr5 125157930 125158267 + 2 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 121267 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 380-241 chr3 13206587 13206914 + 2 NA Intergenic Intergenic -133321 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 290-314 chr4 66768669 66768895 + 2 NA Intergenic L1MEd|LINE|L1 491958 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 291-170 chr17 34693801 34693980 + 2 NA Intergenic L1MB4|LINE|L1 113141 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 309-118 chr12 118225536 118225769 + 2 NA intron (NM_001346490, intron 10 of 21) intron (NM_001346490, intron 10 of 21) -35117 NM_001346497 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 260-249 chr21 27575103 27575306 + 2 NA Intergenic Intergenic -147175 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 318-576 chr9 87229665 87229831 + 2 NA Intergenic Intergenic 81104 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 229-238 chr22 19463663 19463841 + 2 NA intron (NM_001035247, intron 6 of 11) intron (NM_001035247, intron 6 of 11) 15441 NM_001362910 7353 Hs.474213 NM_005659 ENSG00000070010 UFD1 UFD1L ubiquitin recognition factor in ER associated degradation 1 protein-coding 370-437 chr8 75891251 75891582 + 2 NA Intergenic Intergenic 351448 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 228-154 chr2 29856699 29856892 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 64791 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 315-200 chr18 60152941 60153200 + 2 NA Intergenic Intergenic 219705 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 357-152 chr17 38998445 38998634 + 2 NA Intergenic AluSc|SINE|Alu 28571 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 597-131 chr8 79562872 79563294 + 2 NA Intergenic L1MB3|LINE|L1 -48034 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 311-442 chr6 125338169 125338394 + 2 NA Intergenic Intergenic -36314 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 351-523 chrUn_KI270757v1 66841 67050 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 301-485 chr9 88984000 88984175 + 2 NA Intergenic Intergenic -6776 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 295-472 chr8 103623102 103623342 + 2 NA intron (NM_001348497, intron 1 of 22) MIRb|SINE|MIR -121312 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 324-122 chr12 81894918 81895218 + 2 NA Intergenic HERVL-int|LTR|ERVL -58651 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 264-302 chr4 126227243 126227400 + 2 NA Intergenic Intergenic 720062 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 293-345 chr5 98589860 98590121 + 2 NA Intergenic Intergenic -178642 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 356-509 chr9 108653200 108653384 + 2 NA Intergenic Intergenic 202694 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 362-415 chr7 116244441 116244686 + 2 NA intron (NM_015641, intron 2 of 6) THE1C-int|LTR|ERVL-MaLR 21610 NM_152829 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 141-14 chr10 113800660 113800736 + 2 NA Intergenic L1MA7|LINE|L1 -22644 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 258-234 chr20 49817637 49817803 + 2 NA intron (NR_048539, intron 2 of 13) intron (NR_048539, intron 2 of 13) 4892 NR_048538 23315 Hs.444202 NM_015266 ENSG00000197818 SLC9A8 NHE-8|NHE8 solute carrier family 9 member A8 protein-coding 118-19 chr14 68158819 68158906 + 2 NA intron (NM_133509, intron 7 of 10) MIRc|SINE|MIR 335270 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 278-334 chr5 44413774 44413993 + 2 NA non-coding (NR_108034, exon 3 of 3) non-coding (NR_108034, exon 3 of 3) -24463 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 512-190 chr4 57677678 57678055 + 2 NA Intergenic Intergenic 251994 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 387-42 chr10 70581615 70581836 + 2 NA Intergenic L1ME3G|LINE|L1 21016 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 210-247 chr6 88675233 88675397 + 2 NA intron (NM_001286428, intron 12 of 13) L1MB7|LINE|L1 -135946 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 169-31 chr12 111893218 111893378 + 2 NA 3' UTR (NM_139078, exon 14 of 14) 3' UTR (NM_139078, exon 14 of 14) -5765 NR_036636 8759 Hs.661708 NR_036636 ADAM1A ADAM1|ADAM1P|FTNAP|Ftna|PH-30a ADAM metallopeptidase domain 1A (pseudogene) pseudo 299-482 chr9 29423914 29424129 + 2 NA Intergenic Intergenic -210420 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 600-130 chr8 117688881 117689427 + 2 NA Intergenic MIR3|SINE|MIR 168441 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 279-291 chr4 58000019 58000219 + 2 NA Intergenic LTR82A|LTR|ERVL 536209 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 298-203 chr2 33489016 33489232 + 2 NA intron (NM_001349975, intron 3 of 19) MER20|DNA|hAT-Charlie 12475 NM_001349976 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 229-203 chr2 155589693 155589909 + 2 NA Intergenic Intergenic 665130 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 287-340 chr6 774733 774926 + 2 NA Intergenic L3|LINE|CR1 -81688 NR_073064 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 359-481 chr8 109122417 109122632 + 2 NA TTS (NM_003301) TTS (NM_003301) 35896 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 457-205 chr5 91159697 91159978 + 2 NA intron (NR_003149, intron 89 of 89) intron (NR_003149, intron 89 of 89) 154565 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 554-101 chr18 78464954 78465415 + 2 NA Intergenic L1MA5|LINE|L1 -471457 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 235-44 chr10 69535715 69535868 + 2 NA Intergenic L2b|LINE|L2 37631 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 521-69 chr12 113658200 113658653 + 2 NA Intergenic Intergenic 115257 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 299-64 chr10 97736559 97736807 + 2 NA promoter-TSS (NM_001002262) promoter-TSS (NM_001002262) -438 NM_001174120 118813 Hs.744075 NM_144588 ENSG00000155256 ZFYVE27 PROTRUDIN|SPG33 zinc finger FYVE-type containing 27 protein-coding 210-299 chr8 129035647 129035804 + 2 NA Intergenic Intergenic -69724 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 387-235 chr3 137784466 137784824 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 12734 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 350-209 chr2 31641504 31641758 + 2 NA Intergenic L1MC4|LINE|L1 -60693 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 508-114 chr2 114872770 114873217 + 2 NA intron (NM_001321910, intron 2 of 26) Charlie3|DNA|hAT-Charlie -39445 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 286-87 chr12 33879237 33879462 + 2 NA Intergenic L1MD3|LINE|L1 -143147 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 263-386 chr7 24606719 24606923 + 2 NA intron (NM_001303037, intron 1 of 11) Tigger4b|DNA|TcMar-Tigger 33369 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 273-229 chr2 114405928 114406142 + 2 NA Intergenic Intergenic -36606 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 221-250 chr5 122557330 122557506 + 2 NA Intergenic Intergenic 27182 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 344-75 chr11 26207193 26207481 + 2 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 18214 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 200-4 chr1 67964092 67964258 + 2 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 87456 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 250-115 chr14 25385696 25385942 + 2 NA Intergenic Intergenic -335522 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 559-22 chr11 15854424 15854827 + 2 NA Intergenic HAL1b|LINE|L1 114996 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 324-326 chr21 32997565 32997789 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -28258 NM_005806 10215 Hs.176977 NM_005806 ENSG00000205927 OLIG2 BHLHB1|OLIGO2|PRKCBP2|RACK17|bHLHe19 oligodendrocyte transcription factor 2 protein-coding 333-352 chr3 75990668 75990927 + 2 NA Intergenic MLT2B1|LTR|ERVL -205248 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 494-139 chr2 170920426 170920814 + 2 NA Intergenic L1MC3|LINE|L1 -7857 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 236-336 chr7 99115667 99115830 + 2 NA intron (NM_020429, intron 1 of 18) L1M4|LINE|L1 28360 NM_181349 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 512-246 chr6 155459260 155459622 + 2 NA Intergenic Intergenic -3602 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 199-21 chr10 56964248 56964366 + 2 NA Intergenic L1PA16|LINE|L1 340252 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 223-302 chr6 68031170 68031339 + 2 NA Intergenic Intergenic -24097 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 656-54 chr2 64539714 64540329 + 2 NA intron (NM_001002243, intron 1 of 8) intron (NM_001002243, intron 1 of 8) 14508 NR_039633 100616419 NR_039633 ENSG00000283204 MIR4434 - microRNA 4434 ncRNA 318-257 chr2 48812318 48812562 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -56716 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 277-74 chr11 56179496 56179745 + 2 NA Intergenic L1MEc|LINE|L1 3002 NM_001005492 282775 Hs.537145 NM_001005492 ENSG00000174957 OR5J2 OR11-266 olfactory receptor family 5 subfamily J member 2 protein-coding 341-219 chr19 36502248 36502554 + 2 NA Intergenic AluSx|SINE|Alu 12774 NR_036504 728752 Hs.729762 NR_036504 ENSG00000267309 LOC728752 - uncharacterized LOC728752 ncRNA 236-156 chr19 22090711 22090937 + 2 NA 3' UTR (NM_001316996, exon 5 of 5) 3' UTR (NM_001316996, exon 5 of 5) 38340 NM_001316997 113835 Hs.283900 NM_033468 ENSG00000197134 ZNF257 BMZF-4|BMZF4 zinc finger protein 257 protein-coding 402-53 chr11 97712015 97712368 + 2 NA Intergenic Intergenic 1203766 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 187-14 chr1 101661256 101661429 + 2 NA Intergenic L1MA9|LINE|L1 185738 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 401-294 chr7 26561376 26561763 + 2 NA Intergenic Intergenic -22744 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 299-8 chr1 38777792 38777984 + 2 NA Intergenic Intergenic 81884 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 352-241 chr2 79101709 79102048 + 2 NA Intergenic Intergenic -13885 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 331-385 chr4 93817193 93817369 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -11472 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 201-68 chr12 124017893 124018033 + 2 NA intron (NM_001347902, intron 2 of 4) Charlie4z|DNA|hAT-Charlie 44748 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 326-145 chr14 29486032 29486238 + 2 NA Intergenic Intergenic 440961 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 213-29 chr10 25136135 25136295 + 2 NA intron (NR_120649, intron 6 of 7) L2a|LINE|L2 23157 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 346-414 chr5 178963632 178963945 + 2 NA intron (NM_001178089, intron 4 of 4) intron (NM_001178089, intron 4 of 4) 22590 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 764-37 chr2 116210850 116211463 + 2 NA Intergenic Intergenic 867341 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 213-311 chrX 140810669 140810808 + 2 NA Intergenic L1PB2|LINE|L1 -26180 NM_004065 1038 Hs.446675 NM_004065 ENSG00000184258 CDR1 CDR|CDR34|CDR62A cerebellar degeneration related protein 1 protein-coding 242-282 chr4 168217924 168218109 + 2 NA intron (NM_017631, intron 37 of 37) intron (NM_017631, intron 37 of 37) 100736 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 390-231 chr3 26555200 26555554 + 2 NA Intergenic L1MA4|LINE|L1 -67429 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 281-472 chrX 148555604 148555805 + 2 NA intron (NM_001169124, intron 1 of 19) intron (NM_001169124, intron 1 of 19) 55087 NM_001169124 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 235-345 chr8 3889671 3889845 + 2 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) 1105156 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 226-101 chr15 61444336 61444500 + 2 NA Intergenic L2a|LINE|L2 -215116 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 434-277 chr8 49090247 49090529 + 2 NA Intergenic LTR48|LTR|ERV1 18044 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 356-313 chr3 4559180 4559410 + 2 NA intron (NM_001168272, intron 4 of 60) L1MC5a|LINE|L1 65947 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 301-474 chr9 8582281 8582450 + 2 NA intron (NM_130392, intron 3 of 30) L1M5|LINE|L1 151581 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 525-16 chr1 215324246 215324694 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 241733 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 226-27 chr1 237925844 237926005 + 2 NA intron (NR_027247, intron 11 of 11) L1MC|LINE|L1 -35002 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 243-425 chr7 79770022 79770167 + 2 NA Intergenic Intergenic 316134 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 264-260 chr22 48951860 48952043 + 2 NA Intergenic Intergenic 85181 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 157-139 chr9 34799710 34799797 + 2 NA Intergenic Intergenic 38833 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 989 chr11 79565602 79566271 + 2 NA Intergenic AluJb|SINE|Alu -124906 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 270-197 chr2 170860056 170860285 + 2 NA 3' UTR (NM_000817, exon 17 of 17) 3' UTR (NM_000817, exon 17 of 17) 43283 NM_000817 2571 Hs.420036 NM_000817 ENSG00000128683 GAD1 CPSQ1|GAD|SCP glutamate decarboxylase 1 protein-coding 217-80 chr11 106535211 106535369 + 2 NA Intergenic MLT1M|LTR|ERVL-MaLR 283883 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 288-205 chr2 121777976 121778199 + 2 NA Intergenic LTR46|LTR|ERV1 22436 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 285-69 chr11 91661511 91661708 + 2 NA Intergenic Intergenic -563425 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 505-163 chr2 187496653 187496980 + 2 NA intron (NM_001318941, intron 4 of 7) intron (NM_001318941, intron 4 of 7) -48564 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 349-468 chr7 12055992 12056226 + 2 NA Intergenic L1M2|LINE|L1 -155185 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 256-228 chr2 214926280 214926464 + 2 NA intron (NR_110292, intron 2 of 3) intron (NR_110292, intron 2 of 3) 79425 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 356-212 chr18 75306806 75307104 + 2 NA Intergenic L1MB3|LINE|L1 95426 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 210-11 chr1 110969118 110969269 + 2 NA Intergenic MER67B|LTR|ERV1 -5249 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 948-9 chr12 33431584 33432204 + 2 NA intron (NM_198992, intron 1 of 6) Kanga1b|DNA|TcMar-Tc2 7925 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 308-220 chr2 34606969 34607197 + 2 NA Intergenic Intergenic -70474 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 276-385 chr5 152942996 152943156 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 29273 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 254-325 chr5 133890415 133890573 + 2 NA Intergenic Intergenic -23183 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 258-298 chr4 110775510 110775748 + 2 NA Intergenic Intergenic 85018 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 381-81 chr12 13585654 13585979 + 2 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -209071 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 521-144 chr21 15675628 15676056 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -54092 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 156-48 chr2 13125493 13125614 + 2 NA Intergenic Intergenic -118540 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 321-100 chr11 48216390 48216567 + 2 NA promoter-TSS (NM_001005470) promoter-TSS (NM_001005470) -332 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 213-151 chr2 155722768 155722937 + 2 NA Intergenic Intergenic 532079 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 309-336 chr3 6034696 6034915 + 2 NA Intergenic L1P3|LINE|L1 770644 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 255-104 chr14 46177835 46178028 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 113772 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 179-118 chr8 79015904 79016055 + 2 NA Intergenic L1MA2|LINE|L1 178450 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 310-445 chr6 42309132 42309406 + 2 NA intron (NM_001297573, intron 3 of 17) MIRb|SINE|MIR -91408 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 291-209 chr2 35338728 35339009 + 2 NA Intergenic L1M4b|LINE|L1 -132537 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 402-264 chr5 31324887 31325146 + 2 NA 3' UTR (NM_004932, exon 12 of 12) 3' UTR (NM_004932, exon 12 of 12) 131330 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 197-106 chr2 153638194 153638346 + 2 NA Intergenic L2a|LINE|L2 -159508 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 239-11 chr1 169457638 169457803 + 2 NA intron (NM_001300968, intron 2 of 6) L1ME3F|LINE|L1 2949 NM_001300968 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 558-174 chr5 43336701 43337121 + 2 NA Intergenic Intergenic -23499 NM_002130 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 438-52 chr11 38357136 38357441 + 2 NA Intergenic Intergenic 289068 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 240-446 chrX 58419366 58419495 + 2 NA Intergenic ALR/Alpha|Satellite|centr -508797 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 260-252 chr22 28449528 28449692 + 2 NA intron (NM_001145418, intron 2 of 22) MIR|SINE|MIR -10259 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 366-213 chr2 115490291 115490532 + 2 NA intron (NM_001321912, intron 4 of 25) THE1D|LTR|ERVL-MaLR 146596 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 302-256 chr21 22591946 22592173 + 2 NA Intergenic Intergenic -487225 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 331-515 chr8 19457601 19457877 + 2 NA non-coding (NR_148901, exon 5 of 10) non-coding (NR_148901, exon 5 of 10) 143763 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 339-347 chr3 4539198 4539418 + 2 NA intron (NM_001168272, intron 4 of 60) L1MEd|LINE|L1 45960 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 290-476 chr9 14829093 14829302 + 2 NA intron (NR_163238, intron 11 of 30) intron (NR_163238, intron 11 of 30) -48766 NR_163242 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 414-205 chr3 39771885 39772142 + 2 NA Intergenic Intergenic -36901 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 454-194 chr21 30423743 30424085 + 2 NA Intergenic MIR3|SINE|MIR 2012 NM_181622 337960 Hs.553687 NM_181622 ENSG00000240432 KRTAP13-3 KAP13.3 keratin associated protein 13-3 protein-coding 458-195 chr4 162678755 162679089 + 2 NA Intergenic L1P4d|LINE|L1 414706 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 203-232 chr8 91565818 91565983 + 2 NA Intergenic L2a|LINE|L2 316581 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 452-120 chr2 22034125 22034430 + 2 NA Intergenic Intergenic -323625 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 520-55 chr11 87445270 87445706 + 2 NA Intergenic Intergenic 273923 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 479-237 chr8 40821406 40821843 + 2 NA intron (NM_024645, intron 2 of 6) intron (NM_024645, intron 2 of 6) 76202 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 277-141 chr16 63748060 63748333 + 2 NA Intergenic Intergenic 1373867 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 269-272 chr4 47607443 47607637 + 2 NA intron (NM_006587, intron 19 of 21) intron (NM_006587, intron 19 of 21) -45129 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 571-67 chr19 11670223 11670575 + 2 NA Intergenic L1ME1|LINE|L1 -3310 NR_002944 664709 Hs.534822 NR_002944 HNRNPA1P10 HNRPA1L-2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo 482-50 chr11 55540260 55540681 + 2 NA Intergenic L2b|LINE|L2 -13799 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 568-158 chr5 30922229 30922672 + 2 NA Intergenic Intergenic -271236 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 185-19 chr1 244019546 244019699 + 2 NA intron (NR_033883, intron 6 of 11) intron (NR_033883, intron 6 of 11) -29317 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 345-301 chr2 234296755 234296928 + 2 NA Intergenic Intergenic 157754 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 372-114 chr12 61029719 61029966 + 2 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat 1162997 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 352-150 chr14 63581448 63581756 + 2 NA Intergenic Intergenic -38207 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 263-255 chr3 48093215 48093391 + 2 NA Intergenic L1ME4a|LINE|L1 -4455 NM_002375 4134 Hs.517949 NM_002375 ENSG00000047849 MAP4 - microtubule associated protein 4 protein-coding 382-367 chr6 159067029 159067264 + 2 NA Intergenic Intergenic -21994 NM_152133 117289 Hs.529984 NM_054114 ENSG00000164691 TAGAP ARHGAP47|FKSG15|IDDM21|TAGAP1 T cell activation RhoGTPase activating protein protein-coding 284-263 chr3 81862486 81862705 + 2 NA Intergenic Intergenic -100950 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 462-207 chr4 74182559 74182869 + 2 NA intron (NM_001351314, intron 5 of 9) MLT1J2|LTR|ERVL-MaLR 24596 NR_147097 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 279-92 chr13 65599367 65599607 + 2 NA Intergenic Intergenic -266560 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 311-45 chr10 24601777 24602080 + 2 NA intron (NM_001367447, intron 12 of 24) intron (NM_001367447, intron 12 of 24) 20915 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 227-349 chr7 63098567 63098726 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 205410 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 470-61 chr13 52922271 52922705 + 2 NA Intergenic AluJr|SINE|Alu -73848 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 426-180 chr3 60532163 60532537 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 85520 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 577 chr1 5438480 5438838 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 424082 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 196-120 chr2 40750769 40750923 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -238411 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 429-303 chr8 100624089 100624427 + 2 NA intron (NM_152628, intron 4 of 13) FLAM_A|SINE|Alu -5853 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 256-399 chr7 124634958 124635167 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 130730 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 588-160 chr8 89204145 89204703 + 2 NA Intergenic Intergenic 553287 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 653-90 chr3 190999086 190999624 + 2 NA Intergenic Intergenic 121425 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 266-219 chr20 42297091 42297351 + 2 NA intron (NM_133170, intron 12 of 31) L1MC4|LINE|L1 -388262 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 300-118 chr14 78517685 78517959 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 114103 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 143-5 chr10 20415228 20415356 + 2 NA Intergenic Intergenic -136678 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 440-235 chr7 45607885 45608272 + 2 NA intron (NM_001281768, intron 3 of 9) L1PA16|LINE|L1 33710 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 384-145 chr18 11390773 11391152 + 2 NA Intergenic Intergenic -63516 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 436-253 chr5 146843457 146843705 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 35204 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 767-16 chr16 74126222 74126817 + 2 NA Intergenic L1MEc|LINE|L1 89002 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 394-16 chr1 108785605 108785982 + 2 NA intron (NM_007269, intron 11 of 18) THE1C-int|LTR|ERVL-MaLR 39119 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 454-98 chr14 86437950 86438188 + 2 NA Intergenic Intergenic -467709 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 598-71 chr2 31583558 31584020 + 2 NA Intergenic Intergenic -2851 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 472-239 chr4 170632771 170633079 + 2 NA Intergenic Intergenic 110810 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 616-137 chr5 130957694 130958113 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 207353 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 246-182 chr2 12247180 12247383 + 2 NA intron (NR_110196, intron 3 of 5) L1MA9|LINE|L1 48151 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 237-376 chr8 83979187 83979409 + 2 NA Intergenic AluSx3|SINE|Alu -203489 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 437-52 chr12 45753628 45754034 + 2 NA intron (NM_152641, intron 3 of 20) AluJo|SINE|Alu 24122 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 460-12 chr1 164180829 164181283 + 2 NA Intergenic L2|LINE|L2 -378304 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 182-45 chr13 54890814 54890931 + 2 NA Intergenic Intergenic -283582 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 365-282 chr4 36941668 36942016 + 2 NA Intergenic L1PB4|LINE|L1 -59937 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 411-40 chr10 103394238 103394549 + 2 NA promoter-TSS (NR_031707) promoter-TSS (NR_031707) 8 NR_031707 100302174 NR_031707 ENSG00000283867 MIR1307 MIRN1307|hsa-mir-1307|mir-1307 microRNA 1307 ncRNA 301-457 chr8 102028227 102028413 + 2 NA intron (NM_001040630, intron 1 of 5) intron (NM_001040630, intron 1 of 5) 43888 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 134-95 chrX 96869672 96869793 + 2 NA intron (NM_007309, intron 4 of 26) intron (NM_007309, intron 4 of 26) -14176 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 297-5 chr1 43194340 43194560 + 2 NA intron (NM_001195831, intron 6 of 23) L1MB7|LINE|L1 -21880 NM_001159936 10969 Hs.346868 NM_006824 ENSG00000117395 EBNA1BP2 EBP2|NOBP|P40 EBNA1 binding protein 2 protein-coding 482-189 chr4 81551738 81552140 + 2 NA Intergenic Intergenic -80032 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 195-87 chr18 2685871 2686026 + 2 NA intron (NM_015295, intron 5 of 47) intron (NM_015295, intron 5 of 47) 30061 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 250-230 chr2 192908051 192908207 + 2 NA Intergenic Intergenic 158284 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 448-201 chr5 10171244 10171616 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 78458 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 310-192 chr18 460627 460849 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 39963 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 322-141 chr13 48613837 48614042 + 2 NA Intergenic L1M4|LINE|L1 -33038 NR_051983 100129597 Hs.175225 NR_051983 ENSG00000233610 LINC00462 - long intergenic non-protein coding RNA 462 ncRNA 192-80 chr16 72591276 72591400 + 2 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 73632 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 394-37 chr10 28009722 28010023 + 2 NA Intergenic Intergenic -10793 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 336-425 chr4 96469038 96469230 + 2 NA intron (NR_147149, intron 2 of 3) THE1B-int|LTR|ERVL-MaLR 158431 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 447-179 chr3 135532932 135533231 + 2 NA Intergenic Intergenic -432647 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 223-159 chr2 103291182 103291378 + 2 NA Intergenic Intergenic -306851 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 449-14 chr1 184631668 184632010 + 2 NA Intergenic Intergenic 123019 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 326-521 chr8 55061080 55061365 + 2 NA Intergenic Intergenic -40806 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 280-124 chr14 76066111 76066296 + 2 NA intron (NM_001102564, intron 5 of 8) intron (NM_001102564, intron 5 of 8) 80440 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 398-301 chr6 119840513 119840844 + 2 NA intron (NR_134600, intron 2 of 3) L1MA9|LINE|L1 -174501 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 296-293 chr3 45151342 45151532 + 2 NA Intergenic L1MEd|LINE|L1 -5015 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 308-177 chr17 9215644 9215843 + 2 NA intron (NM_004822, intron 5 of 6) L1M6|LINE|L1 -36625 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 115-45 chr7 40901380 40901437 + 2 NA Intergenic Intergenic 78531 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 331-434 chr5 121111253 121111472 + 2 NA Intergenic Intergenic -211188 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 326-33 chr1 175390654 175390881 + 2 NA intron (NM_003285, intron 7 of 22) MIRb|SINE|MIR -197780 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 706-45 chr22 49745754 49746190 + 2 NA Intergenic L1MB7|LINE|L1 78359 NM_001349941 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 267-43 chr10 33681142 33681341 + 2 NA Intergenic Intergenic 91439 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 314-332 chr20 5234132 5234376 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 82478 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 311-66 chr10 99003915 99004135 + 2 NA intron (NM_021828, intron 3 of 11) L1MA8|LINE|L1 -79457 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 494-20 chr10 32735142 32735508 + 2 NA intron (NM_001321115, intron 29 of 43) L1MCa|LINE|L1 166147 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 213-15 chr1 186098341 186098503 + 2 NA intron (NM_031935, intron 68 of 106) L1MA6|LINE|L1 -197851 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 322-573 chr9 122749497 122749768 + 2 NA promoter-TSS (NM_001004453) promoter-TSS (NM_001004453) -216 NM_001004453 392390 Hs.553790 NM_001004453 ENSG00000171459 OR1L6 HG16|OR1K1|OR1L7|OR9-30 olfactory receptor family 1 subfamily L member 6 protein-coding 507-145 chr2 209449854 209450314 + 2 NA intron (NM_001039538, intron 1 of 14) AluSq|SINE|Alu 26037 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 302-34 chr1 241791774 241792005 + 2 NA intron (NM_001367482, intron 25 of 27) intron (NM_001367482, intron 25 of 27) -56302 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 312-273 chr2 183381270 183381556 + 2 NA Intergenic Intergenic 256970 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 563-181 chr8 83344370 83344757 + 2 NA Intergenic Intergenic -59195 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 669-66 chr20 52837926 52838588 + 2 NA Intergenic MamRep38|DNA|hAT -134101 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 205-19 chr1 212812246 212812437 + 2 NA intron (NM_001146169, intron 9 of 9) intron (NM_001146169, intron 9 of 9) 20447 NM_001146169 128387 Hs.530538 NM_001042552 ENSG00000203705 TATDN3 - TatD DNase domain containing 3 protein-coding 265-34 chr10 54514187 54514408 + 2 NA intron (NR_134503, intron 1 of 5) intron (NR_134503, intron 1 of 5) 28067 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 322-287 chr20 15380544 15380811 + 2 NA intron (NM_001351663, intron 6 of 17) MER63C|DNA|hAT-Blackjack 183837 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 402-44 chr11 23607890 23608125 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -188817 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 319-495 chr7 29122504 29122726 + 2 NA intron (NM_001371261, intron 2 of 13) intron (NM_001371261, intron 2 of 13) -2418 NR_120523 101928168 Hs.666750 NR_120523 ENSG00000285412 LOC101928168 - uncharacterized LOC101928168 ncRNA 408-300 chr6 119835947 119836300 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) -179056 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 444-192 chr5 26497335 26497646 + 2 NA Intergenic Intergenic 541096 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 204-232 chr5 38484965 38485151 + 2 NA intron (NM_001127671, intron 17 of 19) intron (NM_001127671, intron 17 of 19) 39512 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 822-40 chr3 46191751 46192189 + 2 NA Intergenic Intergenic 16343 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 418-104 chr19 36540945 36541321 + 2 NA Intergenic MLT2F|LTR|ERVL -12862 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 256-306 chr5 8181132 8181291 + 2 NA Intergenic Intergenic 276353 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 295-54 chr10 93873177 93873419 + 2 NA Intergenic L1MA5A|LINE|L1 -20680 NM_001345993 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 518-293 chr8 29010335 29010834 + 2 NA intron (NM_001324384, intron 5 of 10) intron (NM_001324384, intron 5 of 10) 119270 NM_001324388 79618 Hs.563560 NM_024567 ENSG00000147421 HMBOX1 HNF1LA|HOT1|PBHNF homeobox containing 1 protein-coding 360-199 chr2 11213801 11214109 + 2 NA intron (NM_001321643, intron 17 of 32) intron (NM_001321643, intron 17 of 32) 58488 NR_104231 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 508-157 chr3 159285202 159285572 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 2741 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 151-25 chr14 64091973 64092090 + 2 NA intron (NM_015180, intron 60 of 114) intron (NM_015180, intron 60 of 114) 3094 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 334-424 chr5 67626199 67626472 + 2 NA Intergenic Intergenic 20454 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 394-9 chr1 76743493 76743763 + 2 NA Intergenic L1MB1|LINE|L1 35639 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 185-53 chr13 93261228 93261354 + 2 NA intron (NM_005708, intron 1 of 8) intron (NM_005708, intron 1 of 8) 34484 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 588-5 chr1 153471434 153471960 + 2 NA Intergenic MER11B|LTR|ERVK -11046 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 305-98 chr11 79775065 79775226 + 2 NA Intergenic Intergenic -334115 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 304-546 chr9 80973443 80973692 + 2 NA Intergenic Intergenic 715968 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 512-288 chr9 16806220 16806677 + 2 NA intron (NM_017637, intron 1 of 6) intron (NM_017637, intron 1 of 6) 64222 NM_001317939 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 514-238 chr5 144247216 144247629 + 2 NA intron (NM_001370487, intron 2 of 2) MLT1G3|LTR|ERVL-MaLR 42031 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 404-2 chr1 40473270 40473528 + 2 NA Intergenic L2a|LINE|L2 -3891 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 134-61 chr4 61090133 61090249 + 2 NA Intergenic Intergenic -53465 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 417-256 chr7 9362804 9363033 + 2 NA Intergenic Intergenic -271352 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 337-50 chr10 54734095 54734354 + 2 NA intron (NM_001354404, intron 4 of 34) L1ME1|LINE|L1 67007 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 544-215 chr7 78614548 78614958 + 2 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 267511 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 320-132 chr12 133110848 133111121 + 2 NA Intergenic AluSz|SINE|Alu 19489 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 355-512 chr8 129148118 129148412 + 2 NA Intergenic LTR33|LTR|ERVL 92975 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 172-86 chr3 190007338 190007427 + 2 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 113515 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 319-318 chr22 48759161 48759422 + 2 NA Intergenic Intergenic -21004 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 240-442 chr9 120164659 120164891 + 2 NA Intergenic L3|LINE|CR1 80275 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 263-54 chr10 78559455 78559686 + 2 NA Intergenic MIR3|SINE|MIR 292228 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 312-466 chr6 166624598 166624843 + 2 NA intron (NM_001006932, intron 2 of 21) MIRc|SINE|MIR 2531 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 253-155 chr17 19023943 19024140 + 2 NA intron (NM_001330148, intron 3 of 3) intron (NM_001330148, intron 3 of 3) -19277 NM_001039999 644815 Hs.710727 NM_001039999 ENSG00000188522 FAM83G PAWS1 family with sequence similarity 83 member G protein-coding 310-424 chr5 124196991 124197244 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 241403 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 387-155 chr2 5520963 5521289 + 2 NA Intergenic Intergenic 169992 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 169-139 chr8 121475138 121475230 + 2 NA Intergenic Intergenic -164162 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 592-34 chr12 56362842 56363249 + 2 NA promoter-TSS (NM_001638) promoter-TSS (NM_001638) -188 NM_001638 319 Hs.534302 NM_001638 ENSG00000175336 APOF Apo-F|LTIP apolipoprotein F protein-coding 318-501 chr7 22153383 22153579 + 2 NA intron (NM_001367601, intron 7 of 13) intron (NM_001367601, intron 7 of 13) 40264 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 412-275 chr6 37825445 37825719 + 2 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 5855 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 284-458 chrX 86300118 86300274 + 2 NA intron (NM_001139515, intron 1 of 11) intron (NM_001139515, intron 1 of 11) 37228 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 363-6 chr1 69204486 69204676 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 148683 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 267-419 chr8 79266019 79266241 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -66058 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 271-452 chr8 107186608 107186764 + 2 NA Intergenic Intergenic 149829 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 377-260 chr22 26696669 26696920 + 2 NA intron (NR_110543, intron 1 of 5) L1MB5|LINE|L1 23951 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 624-4 chr1 87661968 87662474 + 2 NA Intergenic Intergenic -290566 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 442-57 chr12 61696247 61696508 + 2 NA Intergenic MER61-int|LTR|ERV1 496462 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 396-204 chr22 19819905 19820165 + 2 NA intron (NM_053004, intron 4 of 7) intron (NM_053004, intron 4 of 7) 34839 NM_024627 79680 Hs.105642 NM_024627 ENSG00000215012 RTL10 BOP|C22orf29 retrotransposon Gag like 10 protein-coding 252-71 chr11 78995006 78995161 + 2 NA intron (NM_001098816, intron 6 of 33) L2c|LINE|L2 407026 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 341-113 chr12 43385705 43385888 + 2 NA intron (NM_025003, intron 29 of 38) L1PA7|LINE|L1 166407 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 283-58 chr10 76905358 76905611 + 2 NA intron (NR_120655, intron 2 of 3) intron (NR_120655, intron 2 of 3) 17440 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 217-42 chr10 55008612 55008744 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -207387 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 334-499 chr7 52412721 52413045 + 2 NA Intergenic Intergenic -622750 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 547-73 chr15 68910582 68911019 + 2 NA Intergenic L1MB2|LINE|L1 -19700 NR_033672 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 335-391 chr4 95951872 95952122 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 111904 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 432-53 chr11 115903513 115903801 + 2 NA Intergenic L3|LINE|CR1 -143457 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 233-25 chr1 230361840 230361989 + 2 NA intron (NM_001258311, intron 1 of 6) L2c|LINE|L2 64418 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 207-276 chr7 110293961 110294134 + 2 NA Intergenic Intergenic -333834 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 295-475 chr8 109805834 109806017 + 2 NA Intergenic L2c|LINE|L2 -114134 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 400-278 chr5 32839332 32839593 + 2 NA Intergenic MER53|DNA|hAT -107981 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 342-480 chr7 30824797 30825099 + 2 NA intron (NR_037598, intron 7 of 19) intron (NR_037598, intron 7 of 19) 53531 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 378-202 chr19 31736977 31737206 + 2 NA Intergenic Intergenic 144810 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 223-121 chr17 60431266 60431420 + 2 NA TTS (NM_181707) TTS (NM_181707) 8854 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 271-46 chr10 55345741 55345984 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -253180 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 288-35 chr1 234833322 234833479 + 2 NA Intergenic Intergenic -73344 NR_148962 100130249 Hs.617350 NR_148962 ENSG00000279261 PP2672 - uncharacterized LOC100130249 ncRNA 284-434 chr9 27568872 27569035 + 2 NA intron (NM_145005, intron 1 of 4) Tigger3b|DNA|TcMar-Tigger 4528 NM_018325 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 579-147 chr7 624715 625234 + 2 NA intron (NM_001164760, intron 4 of 10) L1MC|LINE|L1 21576 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 288-117 chr14 55128061 55128310 + 2 NA Intergenic Intergenic -1067 NM_001357678 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 291-222 chr2 94972412 94972630 + 2 NA Intergenic AluY|SINE|Alu -25179 NR_037597 442028 Hs.611545 NR_037597 ENSG00000259848 LOC442028 - uncharacterized LOC442028 ncRNA 229-256 chr3 107012052 107012210 + 2 NA Intergenic Intergenic 228507 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 313-340 chr3 60563907 60564086 + 2 NA intron (NM_001320900, intron 5 of 9) Tigger1|DNA|TcMar-Tigger 53874 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 218-308 chr7 96529856 96530020 + 2 NA intron (NR_163953, intron 2 of 5) intron (NR_163953, intron 2 of 5) -26415 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 345-505 chr7 125496150 125496400 + 2 NA Intergenic L1MCc|LINE|L1 -231984 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 540-197 chr7 54146664 54147074 + 2 NA Intergenic L1MA6|LINE|L1 -183828 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 714-63 chr6 25617548 25617939 + 2 NA intron (NM_001173977, intron 36 of 36) intron (NM_001173977, intron 36 of 36) -34472 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 144-39 chr2 17820278 17820363 + 2 NA Intergenic L1M5|LINE|L1 3860 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 200-108 chr18 5939505 5939662 + 2 NA Intergenic Intergenic -43629 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 300-463 chr8 81354553 81354796 + 2 NA Intergenic Intergenic 74138 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 240-106 chr12 31784649 31784782 + 2 NA Intergenic Intergenic 7583 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 245-376 chrX 66781361 66781535 + 2 NA Intergenic Intergenic -142150 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 301-93 chr12 39930407 39930614 + 2 NA intron (NM_052885, intron 4 of 9) HAL1|LINE|L1 175571 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 372-63 chr10 131152073 131152362 + 2 NA intron (NM_174937, intron 6 of 11) THE1D-int|LTR|ERVL-MaLR 56999 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 334-187 chr16 7663632 7663800 + 2 NA intron (NM_145893, intron 9 of 13) intron (NM_145893, intron 9 of 13) 330871 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 654-80 chr3 59926280 59926778 + 2 NA intron (NM_001320901, intron 5 of 6) L2a|LINE|L2 154380 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 246-401 chr8 88027397 88027615 + 2 NA Intergenic HAL1|LINE|L1 -153491 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 342-413 chr5 102349934 102350200 + 2 NA Intergenic L1PB1|LINE|L1 -53783 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 608-7 chr1 174904887 174905360 + 2 NA intron (NM_001366451, intron 5 of 12) L1M3f|LINE|L1 29605 NM_001035230 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 240-325 chr4 93009751 93009891 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 705422 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 323-13 chr1 76910641 76910837 + 2 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 43259 NM_030965 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 395-148 chr18 78231931 78232227 + 2 NA Intergenic Intergenic -238352 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 332-444 chr5 172603182 172603355 + 2 NA Intergenic Intergenic -37995 NM_001308177 54492 Hs.91521 NM_001142651 ENSG00000214357 NEURL1B NEURL3|RNF67B|hNeur2|neur2 neuralized E3 ubiquitin protein ligase 1B protein-coding 228-107 chr15 23864628 23864830 + 2 NA Intergenic L1MC4|LINE|L1 -110418 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 299-50 chr10 41901061 41901253 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 466888 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 210-209 chr4 124197152 124197294 + 2 NA Intergenic Intergenic 361211 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 255-336 chr5 112119588 112119777 + 2 NA Intergenic Intergenic -40844 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 360-483 chr9 14795689 14795993 + 2 NA intron (NR_163238, intron 22 of 30) MIRb|SINE|MIR -15410 NR_163242 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 206-292 chrX 64599989 64600185 + 2 NA Intergenic L2c|LINE|L2 -204635 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 445-175 chr3 81283825 81284103 + 2 NA Intergenic L1ME1|LINE|L1 290096 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 270-307 chr5 88149173 88149368 + 2 NA Intergenic Intergenic 119575 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 305-324 chr22 23553442 23553658 + 2 NA Intergenic Intergenic 15448 NR_109832 101978785 Hs.575107 NR_109832 PCAT14 - prostate cancer associated transcript 14 ncRNA 450-134 chr2 35585788 35586147 + 2 NA Intergenic MER66-int|LTR|ERV1 114562 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 218-204 chr3 11078723 11078909 + 2 NA Intergenic L1MB7|LINE|L1 -58422 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 283-70 chr10 122652255 122652505 + 2 NA Intergenic L1M2|LINE|L1 -20502 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 132-11 chr10 99621754 99621869 + 2 NA Intergenic Intergenic -1372 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 130-53 chr22 43640640 43640720 + 2 NA intron (NM_198856, intron 15 of 29) L1MEf|LINE|L1 124426 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 365-228 chr2 234445042 234445248 + 2 NA intron (NR_146988, intron 2 of 2) intron (NR_146988, intron 2 of 2) 9450 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 499-163 chr3 44386469 44386905 + 2 NA intron (NM_001282915, intron 5 of 10) MER52A|LTR|ERV1 36250 NM_001351479 102724231 Hs.131918 NM_001351479 C3orf86 LINC00694 chromosome 3 open reading frame 86 protein-coding 258-216 chr2 225148171 225148319 + 2 NA Intergenic L2a|LINE|L2 -105777 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 348-474 chr6 156610777 156611022 + 2 NA Intergenic Intergenic -166956 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 241-239 chr3 89264051 89264251 + 2 NA intron (NM_182644, intron 3 of 6) MLT1C-int|LTR|ERVL-MaLR 156530 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 406-145 chr2 63902889 63903230 + 2 NA intron (NM_001005739, intron 20 of 22) L1ME1|LINE|L1 61179 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 326-417 chr5 82915708 82916024 + 2 NA Intergenic Intergenic -56030 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 355-288 chr20 55487755 55488045 + 2 NA Intergenic Intergenic -60703 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 343-237 chr2 52784850 52785135 + 2 NA Intergenic L1ME2z|LINE|L1 -82377 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 362-378 chr6 74871291 74871543 + 2 NA Intergenic L2b|LINE|L2 257365 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 269-160 chr18 10107892 10108090 + 2 NA Intergenic Intergenic 193975 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 590-32 chr12 46786380 46786893 + 2 NA intron (NM_018018, intron 5 of 16) intron (NM_018018, intron 5 of 16) 39361 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 308-70 chr10 105409622 105409915 + 2 NA Intergenic MamTip1|DNA|hAT-Tip100 410565 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 420-262 chr6 144537378 144537738 + 2 NA intron (NM_007124, intron 42 of 73) intron (NM_007124, intron 42 of 73) 131903 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 842-22 chr2 118214596 118215083 + 2 NA Intergenic L1MD1|LINE|L1 -28453 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 537-32 chr10 111136850 111137191 + 2 NA Intergenic MIR3|SINE|MIR 22729 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 135-7 chr1 230039025 230039146 + 2 NA Intergenic L1M5|LINE|L1 -18704 NM_001291866 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 418-188 chr4 93870044 93870286 + 2 NA Intergenic Intergenic 41412 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 338-34 chr1 226935641 226935821 + 2 NA Intergenic L2|LINE|L2 -4563 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 473-273 chr8 84946841 84947273 + 2 NA Intergenic MamGypLTR2b|LTR|Gypsy -160181 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 226-219 chr3 31712947 31713073 + 2 NA intron (NR_049771, intron 2 of 4) L2a|LINE|L2 8797 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 356-48 chr10 48714943 48715291 + 2 NA intron (NM_020945, intron 2 of 61) MLT1G1|LTR|ERVL-MaLR 29654 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 339-615 chr9 132067897 132068176 + 2 NA intron (NM_001253881, intron 2 of 6) L1MC5a|LINE|L1 11831 NM_001253882 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 188-8 chr1 107386071 107386222 + 2 NA intron (NM_001113226, intron 2 of 6) (TA)n|Simple_repeat|Simple_repeat 238077 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 326-415 chr5 71903554 71903857 + 2 NA Intergenic Intergenic 184430 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 392-148 chr2 79439585 79439855 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 61124 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 248-100 chr13 85098789 85098981 + 2 NA intron (NR_126383, intron 1 of 5) intron (NR_126383, intron 1 of 5) 49172 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 276-25 chr1 184661115 184661307 + 2 NA Intergenic LTR16A|LTR|ERVL 93647 NM_001319960 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 196-7 chr1 74245990 74246159 + 2 NA intron (NM_015978, intron 2 of 24) intron (NM_015978, intron 2 of 24) 10687 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 391-267 chr4 120650244 120650449 + 2 NA Intergenic Intergenic 272520 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 251-140 chr18 41905578 41905780 + 2 NA Intergenic Intergenic -49555 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 267-295 chr4 75392323 75392514 + 2 NA Intergenic Intergenic 38342 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 283-116 chr13 22720057 22720324 + 2 NA Intergenic L1ME4b|LINE|L1 177991 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 599-93 chr3 167062503 167062984 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 164060 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 336-257 chr2 20866711 20866996 + 2 NA Intergenic L1MC4|LINE|L1 -43723 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 327-507 chr8 137194404 137194601 + 2 NA Intergenic MLT2F|LTR|ERVL 219086 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 370-86 chr11 54912328 54912585 + 2 NA Intergenic ALR/Alpha|Satellite|centr 205624 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 419-44 chr10 122321299 122321629 + 2 NA intron (NM_001318189, intron 10 of 15) L1PA16|LINE|L1 50168 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 466-213 chr5 133562503 133562921 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 49829 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 325-194 chr16 31898373 31898610 + 2 NA intron (NR_049749, intron 4 of 4) L1M4c|LINE|L1 24684 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 217-190 chr2 166619302 166619418 + 2 NA Intergenic Intergenic -132389 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 325-277 chr2 119110001 119110283 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 48609 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 338-40 chr1 241379122 241379416 + 2 NA Intergenic Intergenic -22039 NM_002924 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 310-333 chr3 96652917 96653186 + 2 NA Intergenic L1ME3A|LINE|L1 -161543 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 913-35 chr6 156031912 156032538 + 2 NA Intergenic Intergenic 85428 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 246-214 chr2 177884861 177885059 + 2 NA intron (NM_001077197, intron 5 of 20) L2a|LINE|L2 3796 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 285-233 chr2 219957787 219958033 + 2 NA Intergenic Intergenic -51345 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 595-124 chr4 87243852 87244184 + 2 NA Intergenic L1MB7|LINE|L1 -23400 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 154-2 chr1 78472786 78472887 + 2 NA Intergenic Intergenic -18138 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 320-525 chr7 157913947 157914150 + 2 NA intron (NM_130843, intron 10 of 21) L1ME3E|LINE|L1 59463 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 406-26 chr1 224011692 224011955 + 2 NA intron (NR_136593, intron 2 of 4) (AATGG)n|Simple_repeat|Simple_repeat 19093 NR_136592 100287497 Hs.568390 NR_136590 LOC100287497 - septin 7 pseudogene pseudo 509-71 chr14 30039752 30040132 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -112095 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 394-184 chr2 155779312 155779699 + 2 NA Intergenic Intergenic 475426 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 420-88 chr15 47862921 47863290 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -16869 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 278-310 chr4 60163222 60163382 + 2 NA Intergenic Intergenic -759317 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 309-93 chr11 113628601 113628877 + 2 NA Intergenic Intergenic 77569 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 144-11 chr1 234351319 234351436 + 2 NA Intergenic L1MEc|LINE|L1 22026 NR_125962 101927765 Hs.596703 NR_125961 ENSG00000231663 COA6-AS1 - COA6 antisense RNA 1 ncRNA 214-259 chr5 32073273 32073468 + 2 NA intron (NM_178140, intron 17 of 24) intron (NM_178140, intron 17 of 24) 100949 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 386-213 chr21 7953157 7953395 + 2 NA Intergenic (CATTC)n|Satellite|Satellite -123644 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 392-291 chr6 145336059 145336334 + 2 NA Intergenic Intergenic 350681 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 267-294 chr4 74716331 74716563 + 2 NA Intergenic Intergenic 78076 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 312-165 chr15 70622479 70622685 + 2 NA Intergenic L1MEg|LINE|L1 7035 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 390-52 chr11 5987830 5988042 + 2 NA promoter-TSS (NM_001005173) promoter-TSS (NM_001005173) -951 NM_001005173 338751 Hs.553703 NM_001005173 ENSG00000183313 OR52L1 OR11-50 olfactory receptor family 52 subfamily L member 1 protein-coding 314-555 chr8 46601515 46601687 + 2 NA intron (NR_146077, intron 3 of 8) Tigger4|DNA|TcMar-Tigger 16042 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 168-28 chr14 53917944 53918104 + 2 NA Intergenic Intergenic 30460 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 242-311 chr5 88671537 88671711 + 2 NA intron (NR_152237, intron 1 of 2) intron (NR_152237, intron 1 of 2) 1715 NR_152242 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 256-13 chr1 79783018 79783240 + 2 NA Intergenic L1M5|LINE|L1 -752626 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 311-303 chr20 48576262 48576513 + 2 NA Intergenic L1MD|LINE|L1 216476 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 180-7 chr1 115310895 115311057 + 2 NA intron (NM_002506, intron 1 of 2) MIRb|SINE|MIR 27260 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 654-96 chr5 77581520 77582121 + 2 NA Intergenic L1M4b|LINE|L1 56877 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 516-216 chr5 159716020 159716470 + 2 NA Intergenic L1PREC2|LINE|L1 155139 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 280-126 chr14 82594779 82595024 + 2 NA Intergenic Intergenic -47731 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 500-298 chr8 90680861 90681250 + 2 NA Intergenic MER51-int|LTR|ERV1 -34972 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 128-22 chr16 55402126 55402194 + 2 NA Intergenic L2a|LINE|L2 60137 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 271-51 chr10 67165512 67165721 + 2 NA intron (NM_001127384, intron 7 of 17) L1MD2|LINE|L1 153350 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 291-505 chrX 58373436 58373718 + 2 NA Intergenic ALR/Alpha|Satellite|centr -462944 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 176-152 chr9 71390213 71390383 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 56673 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 276-45 chr10 22492666 22492847 + 2 NA Intergenic Intergenic -54827 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 348-205 chr18 72572774 72573040 + 2 NA Intergenic Intergenic -28565 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 217-244 chr3 180681018 180681202 + 2 NA Intergenic Intergenic -1621 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 497-177 chr3 66677523 66677962 + 2 NA Intergenic AluJb|SINE|Alu 60594 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 403-185 chr22 27898980 27899324 + 2 NA intron (NM_001284278, intron 3 of 11) MIRb|SINE|MIR 20062 NM_001284278 23760 Hs.705323 NM_012399 ENSG00000180957 PITPNB PI-TP-beta|PtdInsTP|VIB1B phosphatidylinositol transfer protein beta protein-coding 381-212 chr2 154515284 154515569 + 2 NA Intergenic L2c|LINE|L2 -57988 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 378-195 chr18 52524912 52525178 + 2 NA intron (NM_005215, intron 1 of 28) MIRb|SINE|MIR 184848 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 440-232 chr7 10325586 10325954 + 2 NA Intergenic Intergenic -376906 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 573-82 chr18 66417039 66417468 + 2 NA Intergenic Intergenic 186837 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 317-156 chr14 79986801 79987072 + 2 NA Intergenic Intergenic -224483 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 375-439 chr9 26218167 26218484 + 2 NA Intergenic HAL1|LINE|L1 151650 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 396-376 chrX 13227280 13227603 + 2 NA Intergenic LTR85b|LTR|Gypsy? 76011 NR_146309 109729169 Hs.348675 NR_146309 LINC02154 - long intergenic non-protein coding RNA 2154 ncRNA 122-26 chr2 135839503 135839586 + 2 NA TTS (NM_005915) TTS (NM_005915) -2360 NM_002299 3938 Hs.551506 NM_002299 ENSG00000115850 LCT LAC|LPH|LPH1 lactase protein-coding 394-90 chr12 89997769 89998035 + 2 NA Intergenic L2a|LINE|L2 50209 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 423-318 chrX 10569005 10569303 + 2 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -1551 NM_001193280 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 166-11 chr11 84028273 84028406 + 2 NA intron (NM_001142699, intron 11 of 27) intron (NM_001142699, intron 11 of 27) 244941 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 581-136 chr5 56516282 56516683 + 2 NA intron (NR_161255, intron 4 of 5) intron (NR_161255, intron 4 of 5) -34713 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 256 chr1 17320160 17320377 + 2 NA intron (NM_012387, intron 1 of 15).2 MLT1D|LTR|ERVL-MaLR 12071 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 335-197 chr17 40149015 40149313 + 2 NA intron (NM_007359, intron 3 of 13) AluSz6|SINE|Alu 8627 NM_007359 22794 Hs.743287 NM_007359 ENSG00000108349 CASC3 BTZ|MLN51 CASC3 exon junction complex subunit protein-coding 167-43 chr17 58885483 58885614 + 2 NA intron (NM_014906, intron 1 of 6) HAL1|LINE|L1 129679 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 238-98 chr14 46758823 46759045 + 2 NA Intergenic Intergenic -107153 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 281-40 chr10 57270811 57271025 + 2 NA Intergenic Intergenic 33641 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 585-99 chr3 77622770 77623263 + 2 NA intron (NM_001290039, intron 24 of 26) intron (NM_001290039, intron 24 of 26) 425947 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 117-46 chr8 134171075 134171166 + 2 NA Intergenic Intergenic 284624 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 333-278 chr2 177837860 177838035 + 2 NA intron (NM_001077197, intron 7 of 20) MER57-int|LTR|ERV1 50809 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 307-301 chr3 44687071 44687343 + 2 NA Intergenic MER65A|LTR|ERV1 -1554 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 308-388 chr5 89050999 89051189 + 2 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -146989 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 630-157 chrX 37941902 37942234 + 2 NA Intergenic Intergenic -48711 NM_012274 25763 Hs.122959 NM_012274 ENSG00000187516 HYPM CXorf27|HIP17 huntingtin interacting protein M protein-coding 295-378 chr5 44694606 44694834 + 2 NA Intergenic Intergenic 114073 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 522-25 chr10 80879861 80880184 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 230225 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 358-422 chr7 7525189 7525384 + 2 NA intron (NM_001037763, intron 3 of 34) intron (NM_001037763, intron 3 of 34) 10587 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 285-172 chr19 12088591 12088741 + 2 NA Intergenic FLAM_C|SINE|Alu -3631 NM_001348164 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 364-95 chr11 93881421 93881755 + 2 NA Intergenic Intergenic -30970 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 226-16 chr1 115487706 115487840 + 2 NA Intergenic L1MC2|LINE|L1 -149537 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 248-352 chr6 74585133 74585347 + 2 NA intron (NR_110856, intron 2 of 3) L1M1|LINE|L1 515789 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 358-181 chr19 34944281 34944611 + 2 NA exon (NM_001099437, exon 5 of 5) exon (NM_001099437, exon 5 of 5) 17543 NR_024018 90075 Hs.657402 NM_194325 ENSG00000168661 ZNF30 KOX28 zinc finger protein 30 protein-coding 332-39 chr1 223043076 223043375 + 2 NA Intergenic L1ME4b|LINE|L1 100023 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 306-144 chr14 53534034 53534205 + 2 NA Intergenic Intergenic 380765 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 537-240 chr7 69178998 69179445 + 2 NA Intergenic AluJb|SINE|Alu 418403 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 153-79 chr5 18722873 18722986 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 915655 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 701-61 chr3 30554139 30554656 + 2 NA Intergenic Intergenic 35529 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 150 chr1 45697520 45697633 + 2 NA intron (NM_001145349, intron 9 of 9) intron (NM_001145349, intron 9 of 9) 9395 NM_016486 51249 Hs.699548 NM_016486 ENSG00000159596 TMEM69 C1orf154 transmembrane protein 69 protein-coding 204-305 chr9 34744329 34744476 + 2 NA Intergenic Intergenic -14914 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 248-186 chr2 75923296 75923438 + 2 NA Intergenic Intergenic -212452 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 375-442 chr9 30064999 30065224 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 343343 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 326-539 chr8 96655453 96655640 + 2 NA intron (NM_016134, intron 1 of 7) L1M3b|LINE|L1 10304 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 567-170 chr7 92063274 92063693 + 2 NA intron (NM_147185, intron 24 of 49) intron (NM_147185, intron 24 of 49) 70994 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 408-287 chr6 5947796 5948197 + 2 NA Intergenic Intergenic 56048 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 412-245 chr5 4652458 4652831 + 2 NA Intergenic L1M4|LINE|L1 -120837 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 261-401 chr9 9810473 9810662 + 2 NA intron (NM_002839, intron 5 of 45) Tigger1|DNA|TcMar-Tigger 11175 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 248-441 chrX 55894235 55894474 + 2 NA Intergenic Intergenic -13769 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 644-13 chr12 40084534 40085126 + 2 NA intron (NM_052885, intron 1 of 9) MER21B|LTR|ERVL 21251 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 303-369 chr5 108397205 108397413 + 2 NA Intergenic AluY|SINE|Alu -15211 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 376-99 chr13 108750393 108750598 + 2 NA intron (NM_015011, intron 4 of 34) AluSz|SINE|Alu 120884 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 293-214 chr2 179485570 179485717 + 2 NA intron (NR_148056, intron 5 of 9) MamRTE1|LINE|RTE-BovB 76945 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 715-19 chr14 79155751 79156122 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -44046 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 735-88 chr9 81425841 81426357 + 2 NA Intergenic L2c|LINE|L2 263436 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 654-3 chr1 57990685 57991271 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 130397 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 254-5 chr1 36808809 36809022 + 2 NA intron (NM_000831, intron 13 of 15) intron (NM_000831, intron 13 of 15) 225600 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 305-200 chr17 66987966 66988223 + 2 NA intron (NM_014405, intron 1 of 3) (AC)n|Simple_repeat|Simple_repeat 23387 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 294-270 chr21 30957903 30958091 + 2 NA Intergenic MamRep1527|LTR|LTR -76417 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 322-272 chr2 148399993 148400305 + 2 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -244602 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 849-9 chr12 59493435 59494064 + 2 NA Intergenic LTR78|LTR|ERV1 -102280 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 194-119 chr3 46540070 46540201 + 2 NA intron (NM_024512, intron 3 of 8) intron (NM_024512, intron 3 of 8) -17263 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 267-378 chr6 117012652 117012829 + 2 NA Intergenic L1MEg|LINE|L1 135498 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 233-347 chr6 154472755 154472924 + 2 NA intron (NM_001368117, intron 1 of 12) A-rich|Low_complexity|Low_complexity 5652 NM_001368118 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 375-153 chr16 19970882 19971225 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -85419 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 453-253 chr7 40654040 40654336 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 325751 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 338-134 chr12 93075841 93076034 + 2 NA intron (NR_040096, intron 3 of 4) L2a|LINE|L2 -98429 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 313-493 chr7 42714012 42714185 + 2 NA Intergenic Intergenic -7651 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 532-106 chr19 35189553 35190050 + 2 NA Intergenic L1MB8|LINE|L1 35066 NM_144779 53827 Hs.333418 NM_014164 ENSG00000089327 FXYD5 DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 297-452 chr8 10098209 10098498 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 2702 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 252-174 chr19 56281067 56281262 + 2 NA intron (NM_001354658, intron 2 of 10) Tigger2a|DNA|TcMar-Tigger 8416 NM_001354658 100506374 Hs.631532 NM_001354658 ENSG00000267710 EDDM13 - epididymal protein 13 protein-coding 228-374 chr9 87132100 87132284 + 2 NA Intergenic L1MA4A|LINE|L1 -16452 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 408-37 chr10 22432704 22433011 + 2 NA Intergenic L1MC|LINE|L1 5072 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 289-343 chr4 83626702 83626972 + 2 NA Intergenic Intergenic 90729 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 239-207 chr2 234155595 234155812 + 2 NA Intergenic Intergenic 105001 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 436-74 chr13 55333656 55334002 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 159375 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 314-224 chr17 51898746 51898980 + 2 NA intron (NM_001082533, intron 4 of 9) L1PA15|LINE|L1 259851 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 332-21 chr1 110037562 110037781 + 2 NA intron (NR_073071, intron 1 of 21) L2c|LINE|L2 3047 NM_033088 85369 Hs.584996 NM_033088 ENSG00000143093 STRIP1 FAM40A|FAR11A striatin interacting protein 1 protein-coding 365-119 chr14 43783624 43783950 + 2 NA Intergenic L2|LINE|L2 723496 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 393-74 chr12 59732516 59732721 + 2 NA intron (NM_001270623, intron 3 of 5) intron (NM_001270623, intron 3 of 5) 43248 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 249-472 chrX 106008455 106008663 + 2 NA Intergenic Intergenic 30168 NM_000354 6906 Hs.76838 NM_000354 ENSG00000123561 SERPINA7 TBG|TBGQTL serpin family A member 7 protein-coding 669-110 chr7 113962886 113963414 + 2 NA Intergenic Intergenic -44141 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 184-137 chr5 99114254 99114416 + 2 NA Intergenic Intergenic -184621 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 392-362 chrX 97942840 97943206 + 2 NA Intergenic L1MEf|LINE|L1 -378488 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 352-398 chr5 9735294 9735483 + 2 NA intron (NR_027112, intron 5 of 12) intron (NR_027112, intron 5 of 12) -105037 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 548-153 chr3 118277786 118278173 + 2 NA Intergenic Intergenic -363789 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 209-77 chr12 101667296 101667446 + 2 NA intron (NM_206820, intron 21 of 29) intron (NM_206820, intron 21 of 29) -30269 NM_020244 56994 Hs.293077 NM_020244 ENSG00000111666 CHPT1 CPT|CPT1 choline phosphotransferase 1 protein-coding 462-52 chr11 114385916 114386276 + 2 NA Intergenic Intergenic -6057 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 438-128 chr2 104214363 104214624 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 193839 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 257-237 chr20 45638895 45639080 + 2 NA Intergenic L1MA8|LINE|L1 -7703 NM_147198 259240 Hs.249828 NM_147198 ENSG00000180205 WFDC9 WAP9|dJ688G8.2 WAP four-disulfide core domain 9 protein-coding 341-7 chr1 34342538 34342825 + 2 NA Intergenic MIR|SINE|MIR 165774 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 638-165 chr8 136772960 136773428 + 2 NA intron (NR_147196, intron 2 of 5) MER44C|DNA|TcMar-Tigger 242396 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 233-385 chr8 124762368 124762532 + 2 NA Intergenic Intergenic -33943 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 411-101 chr15 48379086 48379458 + 2 NA Intergenic MER70A|LTR|ERVL 47075 NM_001948 1854 Hs.527980 NM_001948 ENSG00000128951 DUT dUTPase deoxyuridine triphosphatase protein-coding 368-196 chr17 70845707 70846010 + 2 NA Intergenic L1P2|LINE|L1 356321 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 442-159 chr20 39352522 39352786 + 2 NA Intergenic L1MA9|LINE|L1 -127906 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 528-253 chr8 111666928 111667288 + 2 NA Intergenic MER31B|LTR|ERV1 290469 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 324-422 chr5 33036409 33036727 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 89125 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 377-310 chr5 22528820 22529009 + 2 NA intron (NM_004061, intron 1 of 14) ERVL-B4-int|LTR|ERVL -315064 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 181-38 chr13 90579295 90579432 + 2 NA Intergenic Intergenic 86075 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 524-182 chr4 98958411 98958811 + 2 NA Intergenic AluSg|SINE|Alu -27974 NM_001968 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 306-409 chr5 139061964 139062191 + 2 NA intron (NM_022464, intron 3 of 9) intron (NM_022464, intron 3 of 9) 136291 NM_022464 64374 Hs.483521 NM_022464 ENSG00000120725 SIL1 BAP|MSS|ULG5 SIL1 nucleotide exchange factor protein-coding 245-374 chr9 124449321 124449559 + 2 NA Intergenic Intergenic -33998 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 733-55 chr3 120238787 120239294 + 2 NA intron (NM_001168271, intron 2 of 8) L1PA10|LINE|L1 5255 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 174-16 chr10 62706809 62706960 + 2 NA Intergenic Intergenic -97836 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 348-425 chr5 118294679 118294889 + 2 NA Intergenic Intergenic 12210 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 339-220 chr17 74558220 74558522 + 2 NA Intergenic L1MD2|LINE|L1 8972 NM_001324073 100130520 NM_001324073 ENSG00000284690 CD300H CD300Hs CD300H molecule (gene/pseudogene) protein-coding 390-116 chr15 57152525 57152743 + 2 NA intron (NM_207038, intron 5 of 19) L1MEf|LINE|L1 -66796 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 428-170 chr3 7862922 7863266 + 2 NA Intergenic Intergenic 153213 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 426-281 chr8 10401730 10402070 + 2 NA intron (NM_001199729, intron 6 of 6) L1MB4|LINE|L1 -72665 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 695-65 chr3 19407102 19407656 + 2 NA intron (NM_144633, intron 7 of 15) L1PA16|LINE|L1 -92448 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 818-6 chr10 107047285 107047780 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 117174 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 304-236 chr2 4810476 4810698 + 2 NA Intergenic Intergenic -154365 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 345-25 chr1 177540366 177540679 + 2 NA Intergenic L1PA15|LINE|L1 -160002 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 171-64 chr2 236123203 236123367 + 2 NA intron (NM_001037131, intron 17 of 17) AluJb|SINE|Alu 45101 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 368-213 chr18 77032669 77032923 + 2 NA intron (NM_001025100, intron 3 of 3) intron (NM_001025100, intron 3 of 3) -15741 NM_002385 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 381-318 chr5 104518204 104518522 + 2 NA Intergenic L1ME3F|LINE|L1 -581111 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 304-61 chr10 88391863 88392067 + 2 NA intron (NM_018363, intron 4 of 6) L1MB7|LINE|L1 191353 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 318-444 chr5 59954848 59955035 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -61215 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 531-225 chr7 45652590 45653086 + 2 NA intron (NM_001281768, intron 6 of 9) intron (NM_001281768, intron 6 of 9) 78470 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 499-127 chr2 116331173 116331515 + 2 NA Intergenic Intergenic 987529 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 331-155 chr14 58896525 58896737 + 2 NA intron (NR_110547, intron 2 of 5) HAL1ME|LINE|L1 68343 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 747-50 chr5 14540246 14540853 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -41243 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 416-220 chr3 46284517 46284831 + 2 NA Intergenic Intergenic 42214 NM_001164680 1232 Hs.506190 NM_001837 ENSG00000183625 CCR3 CC-CKR-3|CD193|CKR3|CMKBR3 C-C motif chemokine receptor 3 protein-coding 265-16 chr1 121484744 121484910 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -34285 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 185-68 chr15 82061251 82061359 + 2 NA Intergenic Intergenic -15287 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 251-397 chr8 110460570 110460740 + 2 NA Intergenic Intergenic -484884 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 334-219 chr18 5177940 5178232 + 2 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 19171 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 367-146 chr16 22752697 22753024 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger -61302 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 329-429 chr4 175278376 175278612 + 2 NA Intergenic L1ME3A|LINE|L1 360136 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 525-14 chr1 163757012 163757490 + 2 NA Intergenic L1MC4|LINE|L1 -334060 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 345-368 chr3 179095588 179095836 + 2 NA Intergenic Intergenic -23903 NM_022470 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 154-108 chr8 124498292 124498393 + 2 NA intron (NM_001146160, intron 7 of 9) intron (NM_001146160, intron 7 of 9) 10234 NR_106903 102466200 NR_106903 ENSG00000284087 MIR6844 hsa-mir-6844 microRNA 6844 ncRNA 587-125 chr4 116799415 116799970 + 2 NA Intergenic AluJo|SINE|Alu 285884 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 129-81 chr9 35222523 35222601 + 2 NA intron (NM_006377, intron 1 of 38) LTR48|LTR|ERV1 60553 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 371-244 chr3 89293779 89294042 + 2 NA intron (NM_182644, intron 3 of 6) MER58B|DNA|hAT-Charlie 186289 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 352-554 chr9 12846039 12846247 + 2 NA Intergenic Intergenic -31754 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 366-182 chr19 58191899 58192138 + 2 NA intron (NM_133502, intron 4 of 7) L2a|LINE|L2 8957 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 112-33 chr3 194596906 194596971 + 2 NA intron (NM_138399, intron 9 of 10) intron (NM_138399, intron 9 of 10) 12670 NR_047575 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 606-166 chr8 117545043 117545415 + 2 NA Intergenic Intergenic 24516 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 435-115 chr19 57591291 57591635 + 2 NA 3' UTR (NM_001321146, exon 3 of 3) 3' UTR (NM_001321146, exon 3 of 3) 7318 NM_001321145 284307 Hs.454830 NM_001010879 ENSG00000171649 ZIK1 ZNF762 zinc finger protein interacting with K protein 1 protein-coding 334-226 chr18 37122496 37122677 + 2 NA intron (NR_136303, intron 8 of 13) L2|LINE|L2 -151874 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 371-125 chr16 25455599 25455876 + 2 NA Intergenic L1PB|LINE|L1 -197892 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 195-89 chr18 6085334 6085485 + 2 NA intron (NM_001365766, intron 15 of 16) intron (NM_001365766, intron 15 of 16) -171335 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 240-423 chr8 123168694 123168887 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -10257 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 436-222 chr4 127319965 127320193 + 2 NA Intergenic L1MC5|LINE|L1 -312878 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 208-141 chr2 226022559 226022710 + 2 NA Intergenic AluSc|SINE|Alu -120160 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 184-155 chr7 26875317 26875476 + 2 NA Intergenic Intergenic -10806 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 543-193 chr5 6089944 6090301 + 2 NA Intergenic Intergenic 247170 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 513-123 chr2 21411283 21411702 + 2 NA Intergenic Intergenic 287506 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 383-160 chr17 65266514 65266818 + 2 NA Intergenic L1MA8|LINE|L1 129296 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 173-15 chr10 108194954 108195046 + 2 NA Intergenic MIRb|SINE|MIR -125707 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 480-304 chr8 134214497 134214838 + 2 NA Intergenic L1MC5|LINE|L1 328171 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 516-179 chr3 116627336 116627779 + 2 NA Intergenic L1MA3|LINE|L1 75084 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 300-221 chr2 212349998 212350168 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 76277 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 580-164 chr6 75002466 75002957 + 2 NA Intergenic Intergenic 126071 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 143-12 chr11 42939619 42939749 + 2 NA Intergenic L1ME5|LINE|L1 329685 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 284-83 chr12 41264507 41264715 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) 76291 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 307-345 chr4 85214354 85214573 + 2 NA Intergenic L1MB1|LINE|L1 246979 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 416-297 chr6 119552528 119552805 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 2858 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 307-403 chr5 145368554 145368708 + 2 NA Intergenic Intergenic 466711 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 401-157 chr2 58488923 58489205 + 2 NA Intergenic Intergenic -31689 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 382-75 chr12 41737300 41737567 + 2 NA Intergenic Intergenic -26756 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 606-138 chr6 2326333 2326801 + 2 NA intron (NR_046229, intron 3 of 6) L1M4c|LINE|L1 80814 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 346-307 chr3 28531997 28532203 + 2 NA Intergenic L1MA4|LINE|L1 -43178 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 328-433 chr5 17959086 17959309 + 2 NA Intergenic Intergenic 151923 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 312-226 chr2 38150170 38150377 + 2 NA intron (NR_027252, intron 2 of 2) L1MA4A|LINE|L1 19168 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 177-150 chr7 46262311 46262418 + 2 NA Intergenic MIRc|SINE|MIR -341092 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 524-280 chr9 80468042 80468396 + 2 NA Intergenic Intergenic 493196 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 517-234 chr6 54281639 54282075 + 2 NA Intergenic L1MB7|LINE|L1 -26584 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 204-191 chr3 17887272 17887435 + 2 NA Intergenic HAL1ME|LINE|L1 -75199 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 376-386 chr7 87112335 87112569 + 2 NA Intergenic Intergenic 39865 NR_136252 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 555-108 chr20 7081090 7081601 + 2 NA Intergenic Intergenic 172857 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 292-211 chr2 46127972 46128255 + 2 NA intron (NM_005400, intron 11 of 14) intron (NM_005400, intron 11 of 14) -169294 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 687-78 chr3 175296559 175297012 + 2 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) -25689 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 431-15 chr1 84853935 84854316 + 2 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 39081 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 641-33 chr13 67377472 67377829 + 2 NA intron (NR_130792, intron 2 of 2) intron (NR_130792, intron 2 of 2) 5263 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 214-3 chr1 29064057 29064267 + 2 NA intron (NM_004437, intron 14 of 18) intron (NM_004437, intron 14 of 18) 58339 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 149-54 chr2 71913242 71913338 + 2 NA Intergenic L1MEc|LINE|L1 234572 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 412-256 chr5 45331562 45331889 + 2 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 364655 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 316-97 chr11 46148042 46148305 + 2 NA Intergenic Intergenic -23782 NR_120565 101928894 Hs.552679 NR_120565 ENSG00000255314 LOC101928894 - uncharacterized LOC101928894 ncRNA 575-75 chr18 67753958 67754495 + 2 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 60596 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 350-290 chr21 28500520 28500840 + 2 NA Intergenic MER65-int|LTR|ERV1 -38638 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 185-92 chr2 53293402 53293556 + 2 NA Intergenic L1MA2|LINE|L1 -474304 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 351-290 chr3 30904052 30904239 + 2 NA Intergenic Intergenic -9484 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 340-448 chr5 59225163 59225350 + 2 NA intron (NM_001165899, intron 3 of 16) L1MB1|LINE|L1 50859 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 271-468 chr8 142609028 142609288 + 2 NA Intergenic Intergenic 5321 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 350-384 chr5 15128993 15129217 + 2 NA Intergenic L1PA15|LINE|L1 137455 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 495-107 chr2 67055752 67056178 + 2 NA Intergenic Intergenic -30481 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 221-19 chr1 177589339 177589524 + 2 NA Intergenic Intergenic -111093 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 278-174 chr18 22011875 22012094 + 2 NA Intergenic L1MEf|LINE|L1 156984 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 266-366 chr6 66531519 66531706 + 2 NA Intergenic L1MEf|LINE|L1 743733 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 228-210 chr3 21844756 21844914 + 2 NA Intergenic Intergenic -93625 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 527-226 chr6 91427854 91428219 + 2 NA Intergenic L1MD1|LINE|L1 -93624 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 125-60 chr6 128814527 128814641 + 2 NA Intergenic L1M8|LINE|L1 -68554 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 248-79 chr12 29123947 29124159 + 2 NA Intergenic L1MC1|LINE|L1 -25225 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 309-105 chr12 45649240 45649489 + 2 NA Intergenic Intergenic 78557 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 172-115 chr6 92725250 92725381 + 2 NA Intergenic Intergenic 694244 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 228-129 chr17 21970247 21970403 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -232670 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 392-103 chr16 25947636 25947893 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -77473 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 229-85 chr12 6154837 6154993 + 2 NA Intergenic Intergenic -30240 NM_000552 7450 Hs.440848 NM_000552 ENSG00000110799 VWF F8VWF|VWD von Willebrand factor protein-coding 573-130 chr4 112649086 112649530 + 2 NA promoter-TSS (NR_029857) promoter-TSS (NR_029857) -605 NR_146093 109864269 Hs.642978 NR_146092 ENSG00000249532 MIR302CHG - miR-302/367 cluster host gene ncRNA 625-89 chr5 148267549 148267952 + 2 NA TTS (NR_105057) TTS (NR_105057) -1044 NR_138538 153218 Hs.483771 NM_001040129 ENSG00000214510 SPINK13 HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding 230-333 chr6 162379044 162379210 + 2 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -348005 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 285-68 chr11 82357419 82357636 + 2 NA intron (NR_120571, intron 1 of 7) MIRb|SINE|MIR 46386 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 207-311 chr9 31871363 31871563 + 2 NA Intergenic Intergenic -489973 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 471-264 chr8 86372980 86373409 + 2 NA intron (NM_007013, intron 2 of 24) L1ME3F|LINE|L1 30647 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 367-77 chr11 81298584 81298929 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -535953 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 337-354 chr3 83873952 83874252 + 2 NA Intergenic Intergenic 995473 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 226-299 chr6 48286083 48286240 + 2 NA Intergenic L1MA1|LINE|L1 -217472 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 245-49 chr10 62964576 62964758 + 2 NA Intergenic Intergenic -145500 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 335-574 chr9 107589443 107589668 + 2 NA Intergenic Intergenic -99786 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 327-412 chr5 114100322 114100624 + 2 NA Intergenic L1MC4|LINE|L1 -261597 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 189-208 chr8 88868076 88868213 + 2 NA Intergenic L1M2|LINE|L1 -540661 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 320-526 chr8 10462491 10462691 + 2 NA Intergenic L1M5|LINE|L1 -11974 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 287-411 chr8 100330188 100330435 + 2 NA intron (NM_001280539, intron 1 of 10) MLT1K|LTR|ERVL-MaLR 5893 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 565-123 chr3 145307423 145307917 + 2 NA Intergenic Intergenic 761515 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 341-533 chr8 119554181 119554489 + 2 NA Intergenic Intergenic 38673 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 236-224 chr3 76549554 76549757 + 2 NA Intergenic L3|LINE|CR1 -490444 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 741-66 chr7 50367559 50367952 + 2 NA intron (NM_001291840, intron 2 of 2) intron (NM_001291840, intron 2 of 2) 48707 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 256-288 chr4 45223911 45224154 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -497398 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 422-42 chr11 50585199 50585473 + 2 NA Intergenic ALR/Alpha|Satellite|centr 176189 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 330-203 chr17 21814165 21814479 + 2 NA Intergenic Intergenic 121799 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 409-133 chr2 20663532 20663847 + 2 NA Intergenic Intergenic -3455 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 262-184 chr18 72328030 72328281 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 216187 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 596-95 chr2 103516367 103516711 + 2 NA Intergenic L1MEc|LINE|L1 -532110 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 462-267 chr7 69104648 69105005 + 2 NA Intergenic L1P4|LINE|L1 492798 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 305-334 chr3 6943564 6943856 + 2 NA intron (NM_000844, intron 1 of 9) L1ME1|LINE|L1 -49693 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 314-24 chr1 107018949 107019165 + 2 NA Intergenic LTR16C|LTR|ERVL -37617 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 363-295 chr3 111231708 111231989 + 2 NA Intergenic Intergenic 160032 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 225-387 chr9 70920944 70921130 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -51985 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 383-243 chr3 35504204 35504429 + 2 NA Intergenic Intergenic -110293 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 346-157 chr15 57886451 57886690 + 2 NA Intergenic Intergenic 127453 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 650-47 chr2 12462482 12462915 + 2 NA intron (NR_110196, intron 4 of 5) L1M4|LINE|L1 -254174 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 285-194 chr2 57008813 57008969 + 2 NA Intergenic L1MA6|LINE|L1 -823121 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 411-198 chr4 1484232 1484507 + 2 NA Intergenic L1MEc|LINE|L1 -77927 NM_001290079 54729 Hs.526396 NM_001290079 ENSG00000235608 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 259-308 chr5 23072642 23072814 + 2 NA Intergenic Intergenic -219384 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 198-218 chr6 85172747 85172861 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 217382 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 255-111 chr14 67966746 67966982 + 2 NA intron (NM_133509, intron 7 of 10) L1ME3G|LINE|L1 143272 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 376-59 chr10 108962718 108962953 + 2 NA Intergenic Intergenic -893542 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 463-124 chr19 33878930 33879315 + 2 NA Intergenic Intergenic 82252 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 413-151 chr2 144905277 144905551 + 2 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 237447 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 343-340 chr3 68445085 68445312 + 2 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) -55439 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 327-500 chr8 118588044 118588297 + 2 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -32831 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 818-29 chr2 239702500 239703107 + 2 NA Intergenic L1ME3Cz|LINE|L1 -60057 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 186-121 chr4 87425755 87425891 + 2 NA intron (NM_024047, intron 1 of 7) intron (NM_024047, intron 1 of 7) 3226 NM_198038 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 316-408 chr4 107236306 107236539 + 2 NA Intergenic L1MC5|LINE|L1 -200109 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 327-244 chr2 28218830 28219023 + 2 NA intron (NM_199193, intron 8 of 13) L1MC4|LINE|L1 -11965 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 198-191 chr5 13642626 13642749 + 2 NA Intergenic Intergenic 301793 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 202-36 chr10 107342272 107342423 + 2 NA Intergenic Intergenic -177641 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 231-91 chr14 34219693 34219885 + 2 NA Intergenic L2b|LINE|L2 242451 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 476-131 chr2 28773955 28774412 + 2 NA intron (NM_206876, intron 2 of 8) intron (NM_206876, intron 2 of 8) 22353 NM_002709 5500 Hs.702907 NM_002709 ENSG00000213639 PPP1CB HEL-S-80p|NSLH2|PP-1B|PP1B|PP1beta|PPP1CD protein phosphatase 1 catalytic subunit beta protein-coding 342-178 chr16 53778582 53778891 + 2 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 74580 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 329-307 chr2 209074603 209074769 + 2 NA Intergenic MER119|DNA|hAT-Charlie -349361 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 470-248 chr7 33194483 33194806 + 2 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 65080 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 279-168 chr2 41052190 41052440 + 2 NA Intergenic Intergenic -539880 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 363-64 chr10 109486563 109486914 + 2 NA Intergenic MIR3|SINE|MIR 436508 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 358-328 chr4 35742264 35742474 + 2 NA Intergenic L1PA13|LINE|L1 501570 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 455-196 chr4 141496669 141496991 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -139753 NM_172175 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 408-86 chr12 72793255 72793636 + 2 NA Intergenic L2b|LINE|L2 -365745 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 484-284 chr9 69313356 69313665 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -6454 NR_047671 100885775 Hs.49768 NR_047671 ENSG00000278910 BANCR LINC00586 BRAF-activated non-protein coding RNA ncRNA 250-171 chr18 1037084 1037238 + 2 NA Intergenic MER76|LTR|ERVL -109168 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 192-37 chr11 40608088 40608233 + 2 NA intron (NM_020929, intron 2 of 4) L1MB1|LINE|L1 -315030 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 565-169 chr7 54324411 54324844 + 2 NA Intergenic L1MC3|LINE|L1 -6070 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 224-85 chr14 53805042 53805221 + 2 NA Intergenic Intergenic 143353 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 483-3 chr1 36920081 36920403 + 2 NA intron (NM_000831, intron 1 of 15) MIR|SINE|MIR 114273 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 312-549 chr9 88163641 88163836 + 2 NA Intergenic Intergenic -25257 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 253-28 chr1 196704716 196704872 + 2 NA intron (NM_000186, intron 9 of 21) PABL_B-int|LTR|ERV1 52916 NM_000186 3075 Hs.363396 NM_000186 ENSG00000000971 CFH AHUS1|AMBP1|ARMD4|ARMS1|CFHL3|FH|FHL1|HF|HF1|HF2|HUS complement factor H protein-coding 250-246 chr20 57553678 57553856 + 2 NA Intergenic MIRb|SINE|MIR -7343 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 621-140 chr9 12049290 12049784 + 2 NA Intergenic Intergenic -643848 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 221-267 chr6 104033467 104033679 + 2 NA Intergenic Intergenic 825973 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 394-272 chr5 97085699 97086015 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 56754 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 616-2 chr1 18481877 18482302 + 2 NA exon (NM_152375, exon 1 of 1) exon (NM_152375, exon 1 of 1) 1159 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 324-472 chr6 121031090 121031393 + 2 NA Intergenic L1MC3|LINE|L1 303239 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 246-258 chr3 83200066 83200271 + 2 NA Intergenic Intergenic 1214026 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 483-224 chr6 51589215 51589592 + 2 NA Intergenic L1MA9|LINE|L1 -32467 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 383-177 chr2 22484135 22484422 + 2 NA Intergenic MIRc|SINE|MIR -52201 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 205-297 chr9 107926168 107926332 + 2 NA Intergenic Intergenic -436481 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 513-192 chr3 171405793 171406211 + 2 NA intron (NM_001161563, intron 1 of 31) intron (NM_001161563, intron 1 of 31) 54403 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 503-17 chr1 166254415 166254842 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -87873 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 522-10 chr1 199048086 199048537 + 2 NA intron (NR_126351, intron 2 of 2) L1PA16|LINE|L1 -29347 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 172-37 chr14 88899474 88899604 + 2 NA Intergenic Intergenic 74888 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 479-185 chr5 15386744 15387097 + 2 NA Intergenic Intergenic -113260 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 427-81 chr15 61946527 61946903 + 2 NA intron (NM_001018088, intron 43 of 81) intron (NM_001018088, intron 43 of 81) 113732 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 371-333 chr6 42098959 42099302 + 2 NA Intergenic Intergenic 43490 NM_001164446 647024 Hs.444277 NM_001164446 ENSG00000188112 C6orf132 bA7K24.2 chromosome 6 open reading frame 132 protein-coding 180 chr1 10170735 10170910 + 2 NA intron (NM_006048, intron 23 of 26) intron (NM_006048, intron 23 of 26) -39748 NM_001365951 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 177-27 chr11 23965748 23965888 + 2 NA Intergenic L1MEf|LINE|L1 -531235 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 319-476 chr6 134648259 134648518 + 2 NA Intergenic Intergenic -108383 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 365-152 chr17 40836672 40836933 + 2 NA TTS (NR_160888) TTS (NR_160888) -14188 NM_000421 3858 Hs.99936 NM_000421 ENSG00000186395 KRT10 BCIE|BIE|CK10|EHK|K10|KPP keratin 10 protein-coding 434-71 chr13 40309218 40309491 + 2 NA Intergenic Intergenic -88852 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 225-134 chr18 9120019 9120195 + 2 NA intron (NM_021074, intron 4 of 7) intron (NM_021074, intron 4 of 7) 16613 NR_110772 101927275 Hs.656442 NR_110771 ENSG00000266053 NDUFV2-AS1 - NDUFV2 antisense RNA 1 ncRNA 362-336 chr5 14082839 14083078 + 2 NA Intergenic L2a|LINE|L2 -60384 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 248-363 chr7 7430622 7430789 + 2 NA intron (NM_001037763, intron 25 of 34) intron (NM_001037763, intron 25 of 34) 105168 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 279-450 chrX 94310425 94310614 + 2 NA Intergenic L2c|LINE|L2 636313 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 294-351 chr4 168577716 168577900 + 2 NA intron (NM_001166108, intron 2 of 21) intron (NM_001166108, intron 2 of 21) -53770 NM_001166109 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 847-18 chr14 53774220 53774884 + 2 NA Intergenic Intergenic 173932 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 227-6 chr1 56703022 56703191 + 2 NA intron (NM_006252, intron 6 of 8) intron (NM_006252, intron 6 of 8) -57788 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 190-134 chr4 55627651 55627804 + 2 NA intron (NR_120489, intron 2 of 8) intron (NR_120489, intron 2 of 8) 8571 NM_001292046 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 222-188 chr2 138928789 138928959 + 2 NA Intergenic Intergenic 31550 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 431-92 chr15 77396135 77396516 + 2 NA intron (NM_024776, intron 1 of 7) L1MA3|LINE|L1 23779 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 490-256 chr7 3198559 3198973 + 2 NA Intergenic L1MDa|LINE|L1 -40193 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 326-146 chr14 39988363 39988571 + 2 NA Intergenic L1ME4a|LINE|L1 -555967 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 294-439 chr7 64088553 64088794 + 2 NA Intergenic MER9a3|LTR|ERVK 43239 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 287-346 chr6 45433359 45433558 + 2 NA intron (NM_001015051, intron 4 of 7) intron (NM_001015051, intron 4 of 7) 11183 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 374-297 chr5 14532309 14532616 + 2 NA Intergenic Intergenic -49330 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 339-325 chr20 58498456 58498691 + 2 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 16365 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 585-15 chr10 59118369 59118811 + 2 NA Intergenic L1MA8|LINE|L1 57874 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 213-145 chr2 108012271 108012401 + 2 NA 3' UTR (NM_001305007, exon 9 of 9) 3' UTR (NM_001305007, exon 9 of 9) 25812 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 457-263 chr8 124061579 124061942 + 2 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) -20978 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 257-115 chr14 70861753 70861943 + 2 NA Intergenic AluSz6|SINE|Alu -45611 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 293-489 chrX 96200366 96200553 + 2 NA Intergenic L1MA9|LINE|L1 137443 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 498-266 chr8 53503896 53504388 + 2 NA Intergenic Intergenic 19823 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 233-64 chr11 87554423 87554590 + 2 NA Intergenic MIRc|SINE|MIR 164905 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 181-156 chr8 71429440 71429577 + 2 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -67439 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 169-82 chr3 172460928 172461028 + 2 NA Intergenic HAL1|LINE|L1 -12522 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 266-44 chr10 75572284 75572500 + 2 NA intron (NM_001305581, intron 2 of 6) L2a|LINE|L2 19934 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 288-23 chr1 159331363 159331560 + 2 NA Intergenic L1M4a1|LINE|L1 -16802 NM_001004467 441911 Hs.553833 NM_001004467 ENSG00000196266 OR10J3 OR1-25|OR10J3P olfactory receptor family 10 subfamily J member 3 protein-coding 480-220 chr4 127028054 127028405 + 2 NA Intergenic Intergenic -604728 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 505-127 chr19 40009409 40009756 + 2 NA intron (NM_178544, intron 6 of 6) L1ME1|LINE|L1 12522 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 523-38 chr10 72389295 72389750 + 2 NA intron (NM_001195519, intron 5 of 6) intron (NM_001195519, intron 5 of 6) -34603 NM_001365080 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 302-299 chr3 148794863 148795067 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -32846 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 382-431 chr9 27300711 27301033 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -3722 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 527-227 chr6 102081093 102081452 + 2 NA Intergenic Intergenic 682287 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 282-474 chr8 142606904 142607104 + 2 NA Intergenic MER77|LTR|ERVL 7475 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 481-229 chr4 114429322 114429766 + 2 NA Intergenic L1PA10|LINE|L1 -168858 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 313-331 chr3 26691864 26692117 + 2 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) -2567 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 119-27 chr2 7898149 7898249 + 2 NA intron (NR_110256, intron 1 of 5) intron (NR_110256, intron 1 of 5) 1456 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 283-146 chr15 56797361 56797605 + 2 NA Intergenic Intergenic -63397 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 340-469 chr6 14817833 14818023 + 2 NA Intergenic Intergenic -428141 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 387-103 chr14 45742764 45743133 + 2 NA Intergenic AluJr|SINE|Alu -27346 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 238-102 chr14 69205048 69205216 + 2 NA intron (NM_001193360, intron 2 of 9) intron (NM_001193360, intron 2 of 9) 13366 NM_001193363 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 230-97 chr13 45586899 45587072 + 2 NA intron (NM_182542, intron 5 of 14) intron (NM_182542, intron 5 of 14) 28754 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 241-261 chr4 41750670 41750811 + 2 NA Intergenic Intergenic -1770 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 269-370 chr7 7948481 7948683 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 20170 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 265-406 chr8 139596377 139596544 + 2 NA Intergenic MLT2C1|LTR|ERVL 106663 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 264-363 chr6 76893229 76893479 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -299731 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 489-174 chr3 62536503 62536938 + 2 NA intron (NM_003716, intron 11 of 29) intron (NM_003716, intron 11 of 29) -163170 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 231-117 chr16 48749522 48749696 + 2 NA Intergenic L1ME3C|LINE|L1 -139429 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 341-523 chr8 82282768 82283084 + 2 NA Intergenic Intergenic -440640 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 354-178 chr18 1952670 1952991 + 2 NA Intergenic MER49|LTR|ERV1 -593201 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 694-43 chr15 47233512 47234052 + 2 NA intron (NM_001198999, intron 1 of 19) L1MB5|LINE|L1 49693 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 251-367 chr7 40613207 40613378 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 366647 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 278-104 chr14 45590808 45591025 + 2 NA Intergenic L2a|LINE|L2 124686 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 255-119 chr15 25571960 25572102 + 2 NA Intergenic L1MEg|LINE|L1 -132975 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 331-80 chr11 16061556 16061776 + 2 NA intron (NM_017508, intron 8 of 14) L1P4|LINE|L1 -92045 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 301-390 chr6 15416980 15417269 + 2 NA intron (NM_004973, intron 3 of 17) intron (NM_004973, intron 3 of 17) 168269 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 538-62 chr13 65383480 65383912 + 2 NA Intergenic L1PA15|LINE|L1 -482351 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 214-200 chr3 4095916 4096092 + 2 NA Intergenic Intergenic -207300 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 366-413 chr7 56114397 56114643 + 2 NA TTS (NM_001145712) TTS (NM_001145712) 1897 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 292-470 chr9 115846653 115846851 + 2 NA Intergenic L2b|LINE|L2 78455 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 428-155 chr20 40528341 40528640 + 2 NA Intergenic L1PREC2|LINE|L1 160746 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 250-123 chr14 54382862 54383079 + 2 NA Intergenic AluSx1|SINE|Alu -13898 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 160-55 chr21 35304760 35304855 + 2 NA Intergenic L2c|LINE|L2 -255509 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 493-273 chr7 36186543 36186916 + 2 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 33475 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 235-272 chr5 5963928 5964159 + 2 NA Intergenic Intergenic 373249 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 215-91 chr14 87284062 87284221 + 2 NA Intergenic Intergenic 371153 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 512-261 chr7 86649465 86649754 + 2 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 5695 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 458-134 chr2 96433794 96434195 + 2 NA Intergenic MER31-int|LTR|ERV1 71363 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 329-191 chr15 76416611 76416833 + 2 NA intron (NR_148227, intron 27 of 32) L1M5|LINE|L1 79949 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 555-39 chr12 23525945 23526365 + 2 NA Intergenic Intergenic 58431 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 768-58 chrX 87012500 87012989 + 2 NA Intergenic LTR12|LTR|ERV1 -505058 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 214-258 chr5 30624033 30624182 + 2 NA Intergenic Intergenic -569579 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 307-459 chr7 86563584 86563872 + 2 NA Intergenic Intergenic -80181 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 505-11 chr1 103877375 103877719 + 2 NA Intergenic L1MB1|LINE|L1 127706 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 281-401 chr6 155806806 155807020 + 2 NA Intergenic L1ME2|LINE|L1 -139884 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 345-384 chr4 54687151 54687355 + 2 NA intron (NM_000222, intron 1 of 20) AluSx|SINE|Alu 29325 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 605-11 chr10 10442599 10442957 + 2 NA intron (NR_120637, intron 1 of 3) intron (NR_120637, intron 1 of 3) 19571 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 295-361 chr4 156978150 156978438 + 2 NA Intergenic Intergenic -6495 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 287-235 chr21 28766456 28766645 + 2 NA Intergenic L1PB2|LINE|L1 118817 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 312-272 chr2 174189116 174189352 + 2 NA intron (NM_001011708, intron 3 of 9) L1M2|LINE|L1 59298 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 325-393 chr4 61161122 61161410 + 2 NA Intergenic Intergenic 17610 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 244-79 chr13 78520575 78520746 + 2 NA intron (NR_047001, intron 3 of 5) MLT1E1A|LTR|ERVL-MaLR -75462 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 251-127 chr17 11839559 11839750 + 2 NA intron (NM_001372, intron 49 of 68) intron (NM_001372, intron 49 of 68) -43248 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 258-31 chr1 218075223 218075405 + 2 NA Intergenic MIR|SINE|MIR 31809 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 401-265 chr5 104792370 104792735 + 2 NA Intergenic Intergenic -306922 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 285-306 chr4 60985054 60985261 + 2 NA Intergenic HAL1|LINE|L1 62538 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 663-46 chr18 711672 712058 + 2 NA intron (NM_001318760, intron 1 of 13) MIR3|SINE|MIR 765 NM_001354066 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 260-214 chr2 115739443 115739614 + 2 NA intron (NM_001321912, intron 9 of 25) intron (NM_001321912, intron 9 of 25) 395713 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 251-430 chrX 40180013 40180237 + 2 NA Intergenic Intergenic -2796 NM_001123383 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 319-586 chrX 75426013 75426242 + 2 NA intron (NM_001146256, intron 6 of 10) intron (NM_001146256, intron 6 of 10) 96910 NM_001146257 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 276-308 chr3 151519193 151519405 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 46696 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 627-113 chr7 112650455 112650862 + 2 NA intron (NR_110158, intron 5 of 7) L1MA9|LINE|L1 28277 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 346-390 chr5 67429078 67429341 + 2 NA Intergenic Intergenic 217580 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 169-62 chr2 189003163 189003256 + 2 NA intron (NM_000090, intron 36 of 50) intron (NM_000090, intron 36 of 50) 7579 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 187-101 chr3 1385287 1385442 + 2 NA intron (NM_001289080, intron 19 of 22) intron (NM_001289080, intron 19 of 22) 292340 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 165-102 chr5 141408743 141408845 + 2 NA exon (NM_032100, exon 1 of 1) exon (NM_032100, exon 1 of 1) 591 NM_032100 56100 Hs.368160 NM_018926 ENSG00000253305 PCDHGB6 PCDH-GAMMA-B6 protocadherin gamma subfamily B, 6 protein-coding 161-70 chr3 122596856 122596999 + 2 NA intron (NM_001113523, intron 1 of 11) intron (NM_001113523, intron 1 of 11) -18688 NM_001308321 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 783-53 chr3 187486766 187487497 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 40085 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 310-270 chr2 173551488 173551784 + 2 NA Intergenic L1MC2|LINE|L1 196764 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 282-457 chr8 106097329 106097547 + 2 NA Intergenic L1MA3|LINE|L1 -36935 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 287-310 chr5 29535438 29535717 + 2 NA Intergenic L1PA17|LINE|L1 -139601 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 379-14 chr1 94733375 94733571 + 2 NA intron (NR_160781, intron 1 of 4) intron (NR_160781, intron 1 of 4) 12427 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 269-136 chr15 68976877 68977036 + 2 NA intron (NR_033672, intron 2 of 16) L1MD2|LINE|L1 -37739 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 218-171 chr2 147448435 147448612 + 2 NA Intergenic Intergenic -395994 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 194-180 chr6 45975298 45975450 + 2 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) -37777 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 572-124 chr4 59205509 59205907 + 2 NA Intergenic LTR82B|LTR|ERVL 192135 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 377-296 chr4 143089736 143089975 + 2 NA Intergenic Intergenic 95006 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 331-132 chr13 33792419 33792629 + 2 NA Intergenic L1M4|LINE|L1 -25545 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 230-361 chr7 122627177 122627372 + 2 NA intron (NM_001167940, intron 4 of 29) MIRb|SINE|MIR 71843 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 304-276 chr2 147295041 147295336 + 2 NA Intergenic Intergenic -549329 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 293-168 chr18 65173177 65173340 + 2 NA Intergenic AluSp|SINE|Alu -576994 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 402-80 chr14 55606724 55607069 + 2 NA intron (NR_073129, intron 2 of 45) intron (NR_073129, intron 2 of 45) 26689 NR_073129 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 318-225 chr18 72899472 72899687 + 2 NA Intergenic LTR16A|LTR|ERVL 30539 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 413-260 chr6 39580279 39580533 + 2 NA intron (NM_001289020, intron 9 of 21) L1ME3Cz|LINE|L1 145002 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 196-95 chr16 61437143 61437315 + 2 NA Intergenic AluSp|SINE|Alu -381463 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 325-128 chr12 67506900 67507190 + 2 NA Intergenic Intergenic -13037 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LINC02408 - long intergenic non-protein coding RNA 2408 ncRNA 313-338 chr3 51028585 51028834 + 2 NA intron (NM_004947, intron 5 of 52) L1P4a|LINE|L1 353629 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 182-29 chr11 74332628 74332772 + 2 NA 3' UTR (NM_173582, exon 14 of 14) 3' UTR (NM_173582, exon 14 of 14) -21060 NM_182904 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 389-111 chr15 36280263 36280560 + 2 NA Intergenic Intergenic -299215 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 305-253 chr2 56239862 56240152 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -54237 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 168-118 chr8 112205839 112205931 + 2 NA Intergenic L1MA7|LINE|L1 -437608 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 319-240 chr2 67587211 67587499 + 2 NA Intergenic L1MCa|LINE|L1 190022 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 262-455 chr9 86704098 86704291 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 243312 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 307-376 chr5 22265055 22265232 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -51293 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 274-17 chr1 168692003 168692221 + 2 NA Intergenic Intergenic 37094 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 196-169 chr3 55579009 55579149 + 2 NA intron (NM_015576, intron 16 of 16) MLT1H|LTR|ERVL-MaLR 80390 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 385-228 chr22 20893050 20893430 + 2 NA Intergenic AluSz|SINE|Alu -24167 NR_156180 1399 Hs.5613 NM_005207 ENSG00000099942 CRKL - CRK like proto-oncogene, adaptor protein protein-coding 310-75 chr11 34441979 34442268 + 2 NA intron (NM_001752, intron 1 of 12) L1ME2z|LINE|L1 3189 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 231-15 chr1 96284877 96285060 + 2 NA intron (NR_110693, intron 5 of 5) L1PA13|LINE|L1 89157 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 469-131 chr2 71763117 71763444 + 2 NA Intergenic L1MC4|LINE|L1 296581 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 356-54 chr10 63877204 63877384 + 2 NA Intergenic L1MA9|LINE|L1 -355404 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 247-46 chr10 104845154 104845362 + 2 NA intron (NM_014978, intron 2 of 26) L2a|LINE|L2 -179042 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 359-25 chr1 164175289 164175559 + 2 NA Intergenic L1M5|LINE|L1 -383936 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 225-279 chr5 52791192 52791366 + 2 NA intron (NM_181501, intron 1 of 28) LTR33|LTR|ERVL 3363 NM_015946 53918 Hs.644352 NM_015946 ENSG00000152684 PELO CGI-17|PRO1770 pelota mRNA surveillance and ribosome rescue factor protein-coding 312-183 chr16 88393711 88394015 + 2 NA Intergenic Intergenic -33608 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 202-160 chr3 45012651 45012824 + 2 NA TTS (NR_023353) TTS (NR_023353) -13566 NM_003278 7123 Hs.476092 NM_003278 ENSG00000163815 CLEC3B TN|TNA C-type lectin domain family 3 member B protein-coding 315-518 chr9 108265776 108266044 + 2 NA Intergenic Intergenic 590076 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 546-43 chr11 101692564 101692925 + 2 NA Intergenic Intergenic -108737 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 346-328 chr3 135750988 135751174 + 2 NA Intergenic MIRc|SINE|MIR -214647 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 377-228 chr2 158829420 158829626 + 2 NA Intergenic Intergenic 34206 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 275-322 chr6 161428086 161428310 + 2 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -42779 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 569-29 chr10 81787910 81788470 + 2 NA Intergenic Intergenic -87004 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 366-255 chr21 19416961 19417215 + 2 NA Intergenic Intergenic 482667 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 265-127 chr15 95211772 95211986 + 2 NA Intergenic Intergenic 115221 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 180-124 chr5 4590350 4590483 + 2 NA Intergenic Intergenic -183065 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 312-126 chr13 56981272 56981558 + 2 NA Intergenic MER41-int|LTR|ERV1 -159503 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 223-267 chr5 18215542 18215752 + 2 NA Intergenic Intergenic 408373 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 354-365 chr5 24883295 24883645 + 2 NA Intergenic Intergenic -42887 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 411-30 chr10 60070881 60071154 + 2 NA exon (NM_020987, exon 37 of 44) exon (NM_020987, exon 37 of 44) 69999 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 677-42 chr2 6321533 6322010 + 2 NA Intergenic L1PA6|LINE|L1 53651 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 452-248 chr7 48878084 48878387 + 2 NA Intergenic (AGATAG)n|Simple_repeat|Simple_repeat -46312 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 236-395 chrX 94143157 94143328 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 469036 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 341-29 chr1 115660496 115660788 + 2 NA intron (NM_001172412, intron 3 of 7) intron (NM_001172412, intron 3 of 7) 18013 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 492-56 chr12 16134652 16135139 + 2 NA Intergenic L2a|LINE|L2 142790 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 217-125 chr15 76101278 76101422 + 2 NA intron (NM_152335, intron 1 of 10) intron (NM_152335, intron 1 of 10) 41365 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 499-36 chr10 130284387 130284777 + 2 NA Intergenic L1M7|LINE|L1 148173 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 329-384 chr3 137505351 137505675 + 2 NA Intergenic L1MEd|LINE|L1 -258802 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 423-267 chr7 51698503 51698894 + 2 NA Intergenic L1MCb|LINE|L1 -305442 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 238-121 chr15 90113072 90113232 + 2 NA intron (NR_149130, intron 2 of 2) MER2|DNA|TcMar-Tigger -10598 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 510-208 chr4 86125164 86125591 + 2 NA intron (NR_110879, intron 2 of 3) BLACKJACK|DNA|hAT-Blackjack 5571 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 214-130 chr17 61792874 61793026 + 2 NA intron (NM_032043, intron 10 of 19) L1MC2|LINE|L1 70609 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 469-238 chr6 35922885 35923189 + 2 NA Intergenic Intergenic -1857 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 385-134 chr17 54741037 54741352 + 2 NA Intergenic Intergenic -159497 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 437-194 chr4 83595410 83595673 + 2 NA intron (NM_001256421, intron 8 of 12) AluJo|SINE|Alu 59433 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 243-226 chr2 120034911 120035098 + 2 NA intron (NM_001330307, intron 2 of 16) intron (NM_001330307, intron 2 of 16) 21927 NM_001184937 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 237-125 chr15 95563884 95564108 + 2 NA Intergenic Intergenic 130903 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 318-92 chr11 7254692 7254971 + 2 NA intron (NM_175733, intron 1 of 6) intron (NM_175733, intron 1 of 6) 2927 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 305-445 chr5 100285994 100286264 + 2 NA Intergenic L1MA1|LINE|L1 102125 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 127-57 chr3 110301545 110301619 + 2 NA Intergenic Intergenic 698754 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 403-333 chrX 56978092 56978423 + 2 NA intron (NR_027139, intron 4 of 4) LTR104_Mam|LTR|Gypsy 17284 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 515-32 chr11 14106496 14106827 + 2 NA intron (NM_006108, intron 5 of 15) intron (NM_006108, intron 5 of 15) 143938 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 654-84 chr4 273588 274233 + 2 NA intron (NM_001137608, intron 3 of 3) L1MB2|LINE|L1 31564 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 336-93 chr11 50519879 50520095 + 2 NA Intergenic ALR/Alpha|Satellite|centr 110840 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 361-121 chr12 120053494 120053806 + 2 NA intron (NR_147894, intron 3 of 8) L1MC4a|LINE|L1 63103 NM_006861 11021 Hs.524788 NM_006861 ENSG00000111737 RAB35 H-ray|RAB1C|RAY RAB35, member RAS oncogene family protein-coding 211-238 chr5 68602631 68602781 + 2 NA Intergenic Intergenic 310129 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 224-165 chr2 215540241 215540405 + 2 NA Intergenic Intergenic 86616 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 451-233 chr8 108350004 108350361 + 2 NA Intergenic L1MEd|LINE|L1 -93401 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 240-41 chr10 36698957 36699105 + 2 NA Intergenic L1MCa|LINE|L1 -426826 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 252-412 chr8 34379413 34379571 + 2 NA Intergenic L1MA9|LINE|L1 -404429 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 547-75 chr16 8191928 8192396 + 2 NA Intergenic Intergenic 397676 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 367-485 chrX 4026478 4026810 + 2 NA Intergenic Intergenic -105902 NR_146579 729162 Hs.657302 NR_146578 FAM239B - zinc finger protein 839 pseudogene pseudo 283-178 chr17 48010096 48010309 + 2 NA Intergenic Intergenic -22680 NR_162100 113218499 NR_162100 MIR10226 - microRNA 10226 ncRNA 385-52 chr11 75914943 75915289 + 2 NA intron (NM_003369, intron 6 of 14) AluSx|SINE|Alu 99906 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 281-146 chr16 52284577 52284747 + 2 NA Intergenic AluJb|SINE|Alu 26098 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 289-236 chr2 112103457 112103704 + 2 NA intron (NM_001329914, intron 15 of 18) L1MB7|LINE|L1 -34805 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 340-288 chr2 154364228 154364525 + 2 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 93062 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 195-247 chr9 8587436 8587551 + 2 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 146453 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 349-183 chr15 63034595 63034859 + 2 NA Intergenic Intergenic -8020 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 320-527 chr8 14131465 14131756 + 2 NA intron (NM_001322880, intron 4 of 6) L1MB4|LINE|L1 501920 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 496-18 chr1 157331855 157332284 + 2 NA Intergenic Intergenic -193478 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 238-249 chr3 149613327 149613527 + 2 NA intron (NM_001348362, intron 5 of 9) intron (NM_001348362, intron 5 of 9) 44598 NM_001168280 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 257-444 chr9 124594301 124594523 + 2 NA intron (NM_033334, intron 2 of 9) intron (NM_033334, intron 2 of 9) -64024 NR_038975 100379345 Hs.660412 NR_038975 ENSG00000224020 MIR181A2HG - MIR181A2 host gene ncRNA 615-142 chr8 137292710 137293136 + 2 NA Intergenic Intergenic 120665 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 552-209 chr8 89013373 89013781 + 2 NA Intergenic Intergenic -686094 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 335-547 chr8 124397620 124397951 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -25086 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 320-183 chr16 10022659 10022896 + 2 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 159290 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 230-332 chr6 160280575 160280791 + 2 NA Intergenic L1ME1|LINE|L1 -21862 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 210-23 chr1 242496728 242496900 + 2 NA intron (NM_001320272, intron 2 of 10) MLT1J|LTR|ERVL-MaLR 27882 NM_152666 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 325-15 chr1 99301568 99301832 + 2 NA intron (NM_001166252, intron 5 of 5) intron (NM_001166252, intron 5 of 5) 37408 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 418-6 chr1 96874655 96874957 + 2 NA Intergenic L1ME1|LINE|L1 152168 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 359-327 chr3 95640213 95640521 + 2 NA Intergenic Intergenic 42826 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 356-8 chr1 57581056 57581320 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -156267 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 174-138 chr7 31406946 31407078 + 2 NA Intergenic Intergenic -66286 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 279-174 chr2 59537701 59537915 + 2 NA Intergenic L1MD|LINE|L1 320100 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 444-19 chr1 219318505 219318885 + 2 NA Intergenic Intergenic 143726 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 347-92 chr12 40659034 40659274 + 2 NA Intergenic AluJo|SINE|Alu -33285 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 528-105 chr16 83271616 83271976 + 2 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -236550 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 513-46 chr11 78673686 78674108 + 2 NA intron (NM_001098816, intron 30 of 33) intron (NM_001098816, intron 30 of 33) -99033 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 617-76 chr20 54929003 54929462 + 2 NA Intergenic Intergenic 453639 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 434-152 chr2 115772866 115773221 + 2 NA intron (NM_001321912, intron 14 of 25) intron (NM_001321912, intron 14 of 25) 429228 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 228-85 chr13 76341444 76341614 + 2 NA Intergenic L3|LINE|CR1 -406397 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 363-324 chr4 54739660 54739885 + 2 NA 3' UTR (NM_001093772, exon 21 of 21) 3' UTR (NM_001093772, exon 21 of 21) 81844 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 180-76 chr2 14804387 14804522 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 171737 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 402-342 chr8 87131371 87131681 + 2 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 265111 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 295-67 chr11 33316920 33317112 + 2 NA intron (NM_001278162, intron 2 of 15) AluSz6|SINE|Alu 58685 NM_001278162 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 354-441 chr7 97591615 97591921 + 2 NA Intergenic L1M1|LINE|L1 -140318 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 600-75 chr2 211638792 211639331 + 2 NA intron (NM_001042599, intron 16 of 26) intron (NM_001042599, intron 16 of 26) 787299 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 334-60 chr10 73926643 73926926 + 2 NA Intergenic Intergenic -4007 NR_160937 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 272-368 chr5 164064884 164065133 + 2 NA Intergenic L2c|LINE|L2 402394 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 318-226 chr18 73749458 73749637 + 2 NA Intergenic Intergenic 398287 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 1048-21 chr6 38734385 38735201 + 2 NA intron (NM_001371, intron 4 of 91) intron (NM_001371, intron 4 of 91) 19482 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 311-434 chr6 62546412 62546696 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -260327 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 236-379 chr9 30144433 30144603 + 2 NA Intergenic Intergenic 263936 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 294-58 chr11 50451402 50451615 + 2 NA Intergenic ALR/Alpha|Satellite|centr 42361 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 332-225 chr19 29559630 29559807 + 2 NA intron (NM_001146339, intron 4 of 4) intron (NM_001146339, intron 4 of 4) 33134 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 541-33 chr11 60652998 60653365 + 2 NA intron (NR_026946, intron 4 of 6) L1PA6|LINE|L1 37430 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 284-21 chr1 173176343 173176536 + 2 NA Intergenic L1PA15|LINE|L1 29093 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 312-223 chr2 30751943 30752163 + 2 NA intron (NM_144575, intron 10 of 22) intron (NM_144575, intron 10 of 22) 55393 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 255-33 chr10 63999455 63999688 + 2 NA Intergenic L1PA13|LINE|L1 -477681 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 265-170 chr2 15820488 15820699 + 2 NA Intergenic MIRb|SINE|MIR -99806 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 195-13 chr1 189090632 189090786 + 2 NA Intergenic L1M4a2|LINE|L1 1385301 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 186-63 chr17 69900760 69900885 + 2 NA intron (NR_109971, intron 5 of 5) intron (NR_109971, intron 5 of 5) -60885 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 338-329 chr3 44556335 44556598 + 2 NA TTS (NR_157564) TTS (NR_157564) 1273 NM_025169 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 270-207 chr20 17515849 17516031 + 2 NA intron (NM_001195, intron 2 of 7) LTR82A|LTR|ERVL 15439 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 258-162 chr17 58299257 58299510 + 2 NA Intergenic AluJr|SINE|Alu -18448 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 228-309 chr7 10243454 10243606 + 2 NA Intergenic Intergenic -459146 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 465-164 chr22 27570518 27570765 + 2 NA Intergenic L2b|LINE|L2 231115 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 472-176 chr2 202716364 202716790 + 2 NA intron (NM_173511, intron 2 of 7) L1MA3|LINE|L1 81608 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 336-156 chr14 29769769 29770032 + 2 NA intron (NM_001330069, intron 1 of 18) MLT1A0|LTR|ERVL-MaLR 157196 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 283-213 chr19 47629435 47629652 + 2 NA intron (NM_015711, intron 1 of 14) L1MB4|LINE|L1 21347 NM_015711 29998 Hs.97244 NM_015711 ENSG00000063169 BICRA GLTSCR1 BRD4 interacting chromatin remodeling complex associated protein protein-coding 254-444 chr9 110658431 110658616 + 2 NA Intergenic Intergenic -10268 NM_001166281 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 195-101 chr2 24034984 24035145 + 2 NA intron (NM_025203, intron 2 of 3) L1ME4a|LINE|L1 12327 NM_025203 80304 Hs.24624 NM_025203 ENSG00000163026 WDCP C2orf44|MMAP|PP384 WD repeat and coiled coil containing protein-coding 432-101 chr17 28585633 28586002 + 2 NA intron (NM_006461, intron 7 of 23) intron (NM_006461, intron 7 of 23) -8922 NM_005165 230 Hs.155247 NM_005165 ENSG00000109107 ALDOC ALDC aldolase, fructose-bisphosphate C protein-coding 468-338 chr9 102089799 102090159 + 2 NA Intergenic L1MA5A|LINE|L1 -351399 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 386-232 chr3 40051709 40052012 + 2 NA intron (NM_001284425, intron 3 of 15) intron (NM_001284425, intron 3 of 15) -48151 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 383-274 chr4 36058635 36058928 + 2 NA intron (NR_146893, intron 32 of 36) L2a|LINE|L2 185158 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 364-408 chr7 30830210 30830404 + 2 NA intron (NR_037598, intron 8 of 19) intron (NR_037598, intron 8 of 19) 58890 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 190-153 chr6 41612715 41612826 + 2 NA Intergenic HAL1|LINE|L1 14047 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 305-146 chr14 43809782 43809966 + 2 NA Intergenic L1PA16|LINE|L1 697409 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 721-20 chr15 88983749 88984206 + 2 NA Intergenic Intergenic -70598 NM_001114614 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 239-383 chr7 97196921 97197144 + 2 NA Intergenic L1ME3B|LINE|L1 80439 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 447-284 chr8 142021495 142021763 + 2 NA Intergenic Intergenic -154710 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 259-165 chr18 5151611 5151764 + 2 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 45570 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 289-316 chr3 127903469 127903627 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -11684 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 447-8 chr1 159786281 159786682 + 2 NA Intergenic Intergenic 5519 NM_017823 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|LDP3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 184-115 chr3 110935447 110935597 + 2 NA Intergenic Helitron3Na_Mam|RC|Helitron 134437 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 201-179 chr4 78842112 78842262 + 2 NA intron (NM_017593, intron 3 of 13) intron (NM_017593, intron 3 of 13) 65809 NM_198892 55589 Hs.146551 NM_017593 ENSG00000138756 BMP2K BIKE|HRIHFB2017 BMP2 inducible kinase protein-coding 211-146 chr2 123006246 123006387 + 2 NA Intergenic L1M2|LINE|L1 67165 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 319-344 chr3 137792292 137792609 + 2 NA Intergenic Intergenic 20539 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 199-234 chr8 54939866 54940020 + 2 NA Intergenic Intergenic -162085 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 198-92 chr17 75750696 75750824 + 2 NA exon (NM_000213, exon 29 of 40) exon (NM_000213, exon 29 of 40) 14432 NM_000154 2584 Hs.407966 NM_000154 ENSG00000108479 GALK1 GALK|GK1|HEL-S-19 galactokinase 1 protein-coding 250-422 chr8 69223327 69223564 + 2 NA Intergenic Intergenic -119255 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 116-4 chr10 15310259 15310347 + 2 NA intron (NM_001010924, intron 1 of 7) MIRc|SINE|MIR 60986 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 164-34 chr13 79946101 79946205 + 2 NA Intergenic L1MEd|LINE|L1 -64924 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 394-56 chr11 17368571 17368947 + 2 NA intron (NM_001202439, intron 3 of 4) intron (NM_001202439, intron 3 of 4) 16959 NM_001202439 374383 Hs.146274 NM_001009913 ENSG00000188211 NCR3LG1 B7-H6|B7H6|DKFZp686O24166 natural killer cell cytotoxicity receptor 3 ligand 1 protein-coding 276-297 chr3 75103001 75103173 + 2 NA Intergenic L1MB1|LINE|L1 -111389 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 151 chr1 17787531 17787643 + 2 NA intron (NM_030812, intron 1 of 2) L1ME3G|LINE|L1 32254 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 399-293 chr7 125801699 125802030 + 2 NA Intergenic ERVL-int|LTR|ERVL -537573 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 198-203 chr5 160905096 160905235 + 2 NA Intergenic MIRb|SINE|MIR 33461 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 247-344 chr5 153838158 153838320 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 60748 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 311-495 chr8 46320370 46320611 + 2 NA Intergenic ALR/Alpha|Satellite|centr 297153 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 369-450 chr9 116538231 116538516 + 2 NA intron (NR_033973, intron 1 of 11) GA-rich|Low_complexity|Low_complexity 34090 NR_033973 100128505 Hs.675821 NR_033973 ENSG00000229105 ASTN2-AS1 - ASTN2 antisense RNA 1 ncRNA 541-101 chr19 37836554 37836939 + 2 NA intron (NR_040015, intron 3 of 5) intron (NR_040015, intron 3 of 5) 18450 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 320-152 chr14 58583815 58584088 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -50117 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 186-84 chr2 106815454 106815570 + 2 NA intron (NM_001142352, intron 5 of 5) intron (NM_001142352, intron 5 of 5) 70516 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 223-156 chr2 70856545 70856678 + 2 NA Intergenic L1MEc|LINE|L1 -20795 NM_015717 50489 Hs.199731 NM_015717 ENSG00000116031 CD207 CLEC4K CD207 molecule protein-coding 345-190 chr16 56035366 56035655 + 2 NA Intergenic L1MD1|LINE|L1 -79479 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 322-184 chr16 17966925 17967140 + 2 NA Intergenic MIRc|SINE|MIR 365630 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 220-351 chr7 109330308 109330466 + 2 NA Intergenic Intergenic -445800 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 209-79 chr12 128521848 128521999 + 2 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 227831 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 253-14 chr1 103371181 103371406 + 2 NA Intergenic MER21A|LTR|ERVL 154218 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 242-416 chr8 128463369 128463587 + 2 NA intron (NR_121672, intron 2 of 7) MIRb|SINE|MIR 101201 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 368-26 chr1 175747469 175747716 + 2 NA Intergenic Intergenic -3997 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 257-100 chr13 53964848 53965068 + 2 NA Intergenic L1M2|LINE|L1 149539 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 362-180 chr16 26211668 26211980 + 2 NA Intergenic Intergenic 186587 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 243-355 chr5 54014108 54014281 + 2 NA intron (NM_019087, intron 4 of 4) MER34|LTR|ERV1 -62595 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 244-29 chr10 31464727 31464905 + 2 NA intron (NM_001323678, intron 2 of 6) L1M2|LINE|L1 -65061 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 572-62 chr15 98049424 98049849 + 2 NA Intergenic L1MEg|LINE|L1 39117 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 286-463 chr8 119624586 119624736 + 2 NA intron (NM_001330600, intron 3 of 25) L1ME4a|LINE|L1 14178 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 276-415 chr6 132842122 132842326 + 2 NA Intergenic L1MA8|LINE|L1 25005 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 220-283 chr5 40620396 40620541 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 -59447 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 233-352 chr7 39223505 39223706 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 105529 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 496-183 chr3 111554263 111554644 + 2 NA intron (NM_001318889, intron 2 of 7) L1MEg|LINE|L1 12256 NM_001318889 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 334-289 chr2 160785066 160785322 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -291387 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 484-91 chr17 47661591 47661881 + 2 NA intron (NM_002265, intron 6 of 21) AluSx|SINE|Alu 10671 NM_001276453 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 370-304 chr3 19910817 19911020 + 2 NA intron (NM_001330688, intron 7 of 14) L1M1|LINE|L1 23299 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 294-162 chr17 53233817 53234053 + 2 NA Intergenic L1MC3|LINE|L1 248430 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 527-58 chr12 17651724 17652082 + 2 NA Intergenic Intergenic -21396 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 269-436 chrX 57250409 57250639 + 2 NA Intergenic L1MA8|LINE|L1 -36153 NM_001353840 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 460-288 chr8 98606461 98606834 + 2 NA intron (NM_001256313, intron 4 of 8) MER21C|LTR|ERVL 179689 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 275-64 chr11 44188433 44188643 + 2 NA intron (NM_207122, intron 8 of 13) L1MEd|LINE|L1 92341 NM_000401 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 295-440 chr7 62789179 62789462 + 2 NA Intergenic ALR/Alpha|Satellite|centr 514736 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 273-34 chr1 224572771 224572930 + 2 NA intron (NR_136293, intron 5 of 9) L1M3|LINE|L1 -43467 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 185-197 chr8 59981496 59981596 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 299854 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 299-361 chr5 38365990 38366236 + 2 NA intron (NM_152403, intron 5 of 21) L3|LINE|CR1 37358 NR_102749 100506475 Hs.662304 NR_102749 ENSG00000248572 EGFLAM-AS2 - EGFLAM antisense RNA 2 ncRNA 447-94 chr16 76587055 76587387 + 2 NA Intergenic Intergenic -47777 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 251-258 chr3 194246667 194246838 + 2 NA promoter-TSS (NR_125402) promoter-TSS (NR_125402) -896 NR_125402 101929337 Hs.548086 NR_125402 ENSG00000238097 LINC02037 - long intergenic non-protein coding RNA 2037 ncRNA 262-439 chr8 125073507 125073680 + 2 NA intron (NM_014846, intron 8 of 28) intron (NM_014846, intron 8 of 28) 18199 NM_014846 9897 Hs.270043 NM_014846 ENSG00000164961 WASHC5 KIAA0196|RTSC|RTSC1|SPG8 WASH complex subunit 5 protein-coding 395-113 chr15 87460161 87460387 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -116655 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 609-76 chr3 54407174 54407618 + 2 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 232461 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 488-85 chr14 87752057 87752530 + 2 NA Intergenic Intergenic -96999 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 683-41 chr20 32936682 32937226 + 2 NA intron (NM_001143967, intron 22 of 26) L1MA8|LINE|L1 67479 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 643-135 chr9 1815281 1815646 + 2 NA Intergenic Intergenic -199884 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 235-201 chr20 44046685 44046891 + 2 NA intron (NM_001098797, intron 3 of 8) L1M5|LINE|L1 100892 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 252-27 chr1 230023420 230023569 + 2 NA Intergenic Intergenic 20777 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 228-62 chr12 14423272 14423441 + 2 NA intron (NM_181352, intron 1 of 14) L1MB8|LINE|L1 38075 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 388-199 chr21 22543919 22544186 + 2 NA Intergenic Intergenic 445435 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 360-345 chr5 8889039 8889327 + 2 NA Intergenic Intergenic 49451 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 215-26 chr10 20430750 20430956 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -121117 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 212-240 chr4 97287671 97287867 + 2 NA Intergenic Intergenic -79157 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 204-10 chr1 118127131 118127294 + 2 NA intron (NM_206996, intron 3 of 48) L1MA5|LINE|L1 58016 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 194-93 chr2 100853174 100853357 + 2 NA intron (NM_002518, intron 1 of 20) intron (NM_002518, intron 1 of 20) 33126 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 348-68 chr10 111654902 111655154 + 2 NA Intergenic Intergenic 528737 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 381-83 chr12 14310990 14311279 + 2 NA Intergenic L1M2|LINE|L1 -54498 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 360-26 chr10 10857626 10857928 + 2 NA intron (NM_001326328, intron 2 of 15) L1MEc|LINE|L1 59052 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 352-74 chr11 31150452 31150698 + 2 NA intron (NM_001367979, intron 9 of 38) (TATC)n|Simple_repeat|Simple_repeat -157889 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 318-312 chr20 1420369 1420616 + 2 NA Intergenic L1PA16|LINE|L1 -27320 NM_001199786 2280 Hs.471933 NM_000801 ENSG00000088832 FKBP1A FKBP-12|FKBP-1A|FKBP1|FKBP12|PKC12|PKCI2|PPIASE FKBP prolyl isomerase 1A protein-coding 302-344 chr5 23367422 23367645 + 2 NA Intergenic Intergenic -140076 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 304-330 chr3 40810394 40810669 + 2 NA Intergenic L1MB8|LINE|L1 285571 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 299-163 chr16 73963778 73963998 + 2 NA Intergenic Intergenic 251633 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 273-143 chr14 101437834 101438043 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -4138 NR_135240 100507277 Hs.123543 NR_135240 ENSG00000259082 LINC02314 - long intergenic non-protein coding RNA 2314 ncRNA 399-246 chr5 50720030 50720316 + 2 NA intron (NM_024615, intron 2 of 25) intron (NM_024615, intron 2 of 25) 52759 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 456-35 chr10 76244042 76244325 + 2 NA intron (NM_001305581, intron 5 of 6) MIRb|SINE|MIR 461422 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 458-223 chr6 62410252 62410623 + 2 NA Intergenic Intergenic -124210 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 367-231 chr2 187110863 187111084 + 2 NA Intergenic Intergenic -261803 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 167-12 chr1 183010044 183010144 + 2 NA Intergenic Intergenic -13326 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 240-449 chrX 91077638 91077861 + 2 NA Intergenic L1M5|LINE|L1 -357090 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 603-66 chr17 65940187 65940738 + 2 NA intron (NM_001353129, intron 18 of 26) L1MA7|LINE|L1 -113919 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 218-287 chr6 62376119 62376262 + 2 NA Intergenic LTR78|LTR|ERV1 -89963 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 428-273 chr7 45996047 45996444 + 2 NA Intergenic L1M4|LINE|L1 -74973 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 257-111 chr14 62805402 62805600 + 2 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 239957 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 405-24 chr10 25391198 25391427 + 2 NA intron (NM_020752, intron 2 of 10) THE1B-int|LTR|ERVL-MaLR -215036 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 155-75 chr4 73682428 73682539 + 2 NA Intergenic Intergenic -58086 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 367-295 chr3 116896364 116896677 + 2 NA Intergenic Intergenic -24911 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 457-141 chr20 47521521 47521762 + 2 NA intron (NM_181659, intron 1 of 22) LTR10F|LTR|ERV1 19754 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 312-406 chr5 19756794 19757024 + 2 NA intron (NM_001349559, intron 3 of 12) HERVL-int|LTR|ERVL 129363 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 468-307 chr7 158504808 158505053 + 2 NA intron (NM_130843, intron 1 of 21) L1ME4a|LINE|L1 27883 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 372-482 chr8 72542573 72542911 + 2 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 5517 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 355-268 chr2 216899716 216899976 + 2 NA Intergenic MER4A|LTR|ERV1 29074 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 330-316 chr20 11501460 11501676 + 2 NA Intergenic Intergenic -228185 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 202-94 chr17 52393744 52393908 + 2 NA intron (NR_146898, intron 1 of 3) (TG)n|Simple_repeat|Simple_repeat 3304 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 317-203 chr18 77359853 77360144 + 2 NA Intergenic L2a|LINE|L2 110150 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 422-256 chr6 45225623 45225995 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -28039 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 419-278 chr7 90432295 90432574 + 2 NA Intergenic L1PBa|LINE|L1 28973 NM_001185073 9069 Hs.731917 NM_012129 ENSG00000157224 CLDN12 - claudin 12 protein-coding 428-229 chr5 44934581 44934878 + 2 NA Intergenic L1MA6|LINE|L1 125782 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 127-58 chr3 171866451 171866573 + 2 NA Intergenic Intergenic 23163 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 498-177 chr3 130455629 130456117 + 2 NA intron (NM_001278298, intron 37 of 40) intron (NM_001278298, intron 37 of 40) -104461 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 345-161 chr14 81741199 81741536 + 2 NA intron (NR_146498, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 1771 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 343-394 chr4 84321562 84321762 + 2 NA Intergenic L1PA16|LINE|L1 -22493 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 393-147 chr18 77203896 77204201 + 2 NA Intergenic Intergenic -45800 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 732-46 chr2 119649748 119650275 + 2 NA intron (NR_073132, intron 23 of 24) intron (NR_073132, intron 23 of 24) -29156 NM_001105198 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 424-39 chr11 41761142 41761541 + 2 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 46773 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 479-252 chr8 108732585 108732948 + 2 NA intron (NR_136411, intron 1 of 3) (AT)n|Simple_repeat|Simple_repeat 54828 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 351-186 chr18 21358017 21358341 + 2 NA intron (NM_001142966, intron 1 of 32) L1MA8|LINE|L1 115937 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 229-266 chr3 178281744 178281919 + 2 NA Intergenic L1MB3|LINE|L1 -137370 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 522-162 chr21 20672454 20672845 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 130459 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 565-164 chr6 159338823 159339284 + 2 NA Intergenic L1MA4A|LINE|L1 -44478 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 246-33 chr10 23781499 23781656 + 2 NA intron (NM_001098500, intron 1 of 18) L1MA10|LINE|L1 86850 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 539-224 chrX 147148522 147148923 + 2 NA Intergenic Intergenic 41065 NR_031709 100302114 NR_031709 ENSG00000216171 MIR513C MIRN513C|hsa-mir-513c microRNA 513c ncRNA 352-148 chr14 62482337 62482658 + 2 NA Intergenic Intergenic -342524 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 205-28 chr10 19116197 19116362 + 2 NA intron (NM_001142308, intron 5 of 39) intron (NM_001142308, intron 5 of 39) 67478 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 367-346 chr5 16363084 16363306 + 2 NA Intergenic LOR1a|LTR|ERV1 77907 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 610-28 chr11 45387179 45387746 + 2 NA intron (NR_122071, intron 4 of 4) MIRc|SINE|MIR 16065 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 379-147 chr2 10840889 10841142 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -3303 NM_001282705 10130 Hs.212102 NM_005742 ENSG00000143870 PDIA6 ERP5|P5|TXNDC7 protein disulfide isomerase family A member 6 protein-coding 329-552 chr7 127143250 127143571 + 2 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -71717 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 406-105 chr16 62006057 62006290 + 2 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 30265 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 255-14 chr1 174572717 174572905 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 124847 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 377-27 chr1 194000385 194000666 + 2 NA Intergenic Intergenic 695780 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 399-281 chr7 53267052 53267318 + 2 NA Intergenic L1MB8|LINE|L1 231552 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 196-188 chr4 73307200 73307350 + 2 NA Intergenic Intergenic -48477 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 222-144 chr18 9289499 9289655 + 2 NA Intergenic AluJr|SINE|Alu -45196 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 297-77 chr11 56887871 56888102 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 39508 NR_110136 101927120 Hs.472675 NR_110136 ENSG00000255433 LINC02735 - long intergenic non-protein coding RNA 2735 ncRNA 224-60 chr12 14380985 14381196 + 2 NA intron (NM_001286515, intron 1 of 12) HAL1|LINE|L1 -4191 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 255-280 chr3 191959961 191960149 + 2 NA Intergenic Intergenic -278575 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 315-294 chr21 31960527 31960791 + 2 NA intron (NM_014586, intron 5 of 10) THE1B|LTR|ERVL-MaLR 87639 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 134-75 chr6 62155724 62155794 + 2 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 130466 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 248-227 chr21 16571822 16572001 + 2 NA intron (NR_136547, intron 2 of 2) L3|LINE|CR1 -16687 NR_136549 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 286-271 chr3 26257900 26258115 + 2 NA Intergenic Intergenic -364799 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 473-95 chr15 41329576 41329898 + 2 NA intron (NM_007280, intron 2 of 4) AluSg7|SINE|Alu 2854 NM_007280 11339 Hs.661645 NM_007280 ENSG00000104147 OIP5 5730547N13Rik|CT86|LINT-25|MIS18B|MIS18beta|hMIS18beta Opa interacting protein 5 protein-coding 249-89 chr12 34661668 34661821 + 2 NA Intergenic ALR/Alpha|Satellite|centr 639248 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 312-370 chr4 58012528 58012815 + 2 NA Intergenic L1MB3|LINE|L1 523657 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 397-283 chr6 115909459 115909819 + 2 NA Intergenic L1MA4|LINE|L1 -129092 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 307-476 chr8 61934572 61934749 + 2 NA Intergenic Intergenic 44821 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 313-298 chr2 229592633 229592891 + 2 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 121793 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 257-64 chr11 80450582 80450820 + 2 NA Intergenic HAL1|LINE|L1 312102 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 208-173 chr3 137709640 137709794 + 2 NA Intergenic Intergenic -54598 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 215-72 chr14 22540414 22540611 + 2 NA Intergenic Intergenic 16550 NR_146543 105370400 NR_146543 ENSG00000259054 LINC02332 - long intergenic non-protein coding RNA 2332 ncRNA 313-227 chr2 6466194 6466423 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -90886 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 246-237 chr20 59699804 59700004 + 2 NA intron (NM_001199506, intron 1 of 12) AluSc|SINE|Alu -21306 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 406-319 chrX 50789803 50790136 + 2 NA intron (NR_027121, intron 1 of 9) Tigger3a|DNA|TcMar-Tigger 24075 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 128-65 chr7 2793112 2793231 + 2 NA intron (NM_007353, intron 2 of 3) L1MC4a|LINE|L1 22059 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 286-154 chr17 33256174 33256388 + 2 NA intron (NM_001094, intron 1 of 9) L1MC4a|LINE|L1 36707 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 186-24 chr11 104638350 104638488 + 2 NA Intergenic Intergenic -29117 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 442-58 chr12 74274238 74274606 + 2 NA intron (NR_038300, intron 3 of 6) L1MCb|LINE|L1 18209 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 312-179 chr16 66334284 66334440 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -32329 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 206-215 chr5 109134650 109134781 + 2 NA intron (NR_146155, intron 17 of 19) L2a|LINE|L2 191654 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 222-139 chr17 76167724 76167906 + 2 NA intron (NM_052916, intron 3 of 18) intron (NM_052916, intron 3 of 18) -26570 NM_001454 2302 Hs.651204 NM_001454 ENSG00000129654 FOXJ1 FKHL13|HFH-4|HFH4 forkhead box J1 protein-coding 205-280 chr8 112631949 112632134 + 2 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -11452 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 294-253 chr2 226238922 226239149 + 2 NA Intergenic Intergenic 96241 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 437-213 chr5 25147001 25147220 + 2 NA intron (NR_147006, intron 3 of 4) THE1D|LTR|ERVL-MaLR 43546 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 255-309 chr4 188668069 188668246 + 2 NA Intergenic L1MCa|LINE|L1 -108500 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 365-335 chr5 144129839 144130058 + 2 NA Intergenic Intergenic 40711 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 563-177 chr7 106161269 106161653 + 2 NA Intergenic L1MEd|LINE|L1 -48885 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 206-125 chr2 120155614 120155726 + 2 NA intron (NM_001330310, intron 20 of 24) L1MB7|LINE|L1 67730 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 212-225 chr3 157274818 157275024 + 2 NA intron (NM_024621, intron 12 of 13) intron (NM_024621, intron 12 of 13) -114161 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 304-267 chr2 121626824 121627025 + 2 NA intron (NM_015282, intron 1 of 38) intron (NM_015282, intron 1 of 38) 22538 NM_001207051 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 470-93 chr16 80658258 80658671 + 2 NA intron (NM_152342, intron 2 of 6) L1MC5a|LINE|L1 -85656 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 523-106 chr17 55045211 55045536 + 2 NA intron (NM_178509, intron 11 of 17) intron (NM_178509, intron 11 of 17) -76588 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 283-335 chr4 113571276 113571443 + 2 NA intron (NM_001221, intron 4 of 18) L1MA8|LINE|L1 190379 NM_001321572 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 191-176 chr5 116141152 116141303 + 2 NA intron (NM_001308080, intron 5 of 6) L1MA9|LINE|L1 55765 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 285-217 chr2 154126903 154127093 + 2 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 182604 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 602-3 chr1 103789285 103789811 + 2 NA Intergenic Intergenic 39707 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 424-167 chr22 17045202 17045580 + 2 NA intron (NR_152826, intron 2 of 3) (TATTTT)n|Simple_repeat|Simple_repeat 8821 NR_015352 100130418 Hs.660640 NR_015352 CECR7 CYCL|SAHL1 cat eye syndrome chromosome region, candidate 7 ncRNA 381-312 chr5 65908488 65908759 + 2 NA Intergenic Intergenic -17931 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 160-63 chr3 38826485 38826594 + 2 NA Intergenic Intergenic -32529 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 224-299 chr7 53670597 53670737 + 2 NA intron (NR_038371, intron 5 of 5) L1MB4|LINE|L1 141264 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 284-421 chr8 134900318 134900567 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 50507 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 283-217 chr2 13592111 13592259 + 2 NA Intergenic L1P4a|LINE|L1 -585172 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 371-37 chr10 21061177 21061462 + 2 NA intron (NM_001173484, intron 2 of 6) (TTATATA)n|Simple_repeat|Simple_repeat -112671 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 378-399 chr7 41371001 41371223 + 2 NA Intergenic Intergenic 269508 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 238-199 chr20 9278178 9278358 + 2 NA intron (NM_182797, intron 1 of 35) intron (NM_182797, intron 1 of 35) -29532 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 511-98 chr18 62514215 62514529 + 2 NA Intergenic L1MEf|LINE|L1 -8653 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 489-190 chr4 47578600 47578877 + 2 NA intron (NM_020453, intron 19 of 22) intron (NM_020453, intron 19 of 22) -73931 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 288-123 chr14 85221335 85221510 + 2 NA Intergenic MER34|LTR|ERV1 -50510 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 366-228 chr2 150996251 150996467 + 2 NA Intergenic L1MB4|LINE|L1 265504 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 359-82 chr11 25726552 25726827 + 2 NA Intergenic L1PA15|LINE|L1 -462434 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 310-551 chr9 75690379 75690598 + 2 NA Intergenic L1MC5a|LINE|L1 -200156 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 358-472 chr8 77322723 77322995 + 2 NA Intergenic Intergenic -127838 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 362-407 chr7 97434015 97434220 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -297969 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 317-278 chr20 45393936 45394134 + 2 NA intron (NR_003189, intron 3 of 5) MLT1F2|LTR|ERVL-MaLR -11958 NM_001197139 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 212-117 chr16 66095069 66095226 + 2 NA Intergenic MIR3|SINE|MIR -271544 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 165-88 chr4 30911847 30911994 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 191551 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 219-242 chr3 117834655 117834842 + 2 NA Intergenic Intergenic -143823 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 336-28 chr1 99446246 99446468 + 2 NA Intergenic Intergenic 41447 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 548-247 chr9 23575629 23576080 + 2 NA intron (NR_121602, intron 11 of 27) intron (NR_121602, intron 11 of 27) 96545 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 536-85 chr16 7362277 7362639 + 2 NA intron (NM_145893, intron 1 of 13) (GT)n|Simple_repeat|Simple_repeat 29613 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 248-217 chr20 5408538 5408717 + 2 NA Intergenic Intergenic 37121 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 240-69 chr10 129115644 129115765 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 202871 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 309-285 chr2 205413432 205413664 + 2 NA intron (NM_205863, intron 19 of 21) intron (NM_205863, intron 19 of 21) -268952 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 326-531 chr8 82486649 82486954 + 2 NA Intergenic L2c|LINE|L2 -425303 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 387-77 chr12 33218707 33218909 + 2 NA Intergenic L1PA13|LINE|L1 221011 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 253-386 chr7 53563764 53564001 + 2 NA Intergenic L1ME3B|LINE|L1 248049 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 212-183 chr2 239846824 239846999 + 2 NA Intergenic L1PB1|LINE|L1 84051 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 327-90 chr11 62308556 62308748 + 2 NA Intergenic AluY|SINE|Alu -9577 NM_206998 404552 Hs.473247 NM_206998 ENSG00000197745 SCGB1D4 IIS secretoglobin family 1D member 4 protein-coding 357-392 chr6 119366665 119366927 + 2 NA Intergenic LTR82A|LTR|ERVL -17035 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 603-27 chr12 5132166 5132533 + 2 NA Intergenic Intergenic 88470 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 517-9 chr1 80945186 80945540 + 2 NA Intergenic L1MB7|LINE|L1 304076 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 155-68 chr3 73651864 73651977 + 2 NA Intergenic Intergenic -26979 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 317-365 chr4 146680740 146680919 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 41936 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 504-234 chr7 1577098 1577460 + 2 NA intron (NR_027328, intron 3 of 3) L1ME1|LINE|L1 7206 NR_027329 114796 Hs.436146 NR_021487 ENSG00000230487 PSMG3-AS1 - PSMG3 antisense RNA 1 (head to head) ncRNA 487-58 chr11 66731803 66732147 + 2 NA Intergenic L2a|LINE|L2 -10576 NM_006946 6712 Hs.26915 NM_006946 ENSG00000173898 SPTBN2 GTRAP41|SCA5|SCAR14 spectrin beta, non-erythrocytic 2 protein-coding 559-164 chr6 157494727 157495179 + 2 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) -34179 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 278-214 chr2 66596799 66596958 + 2 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 22848 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 351-466 chr8 29184201 29184471 + 2 NA intron (NM_015254, intron 6 of 39) intron (NM_015254, intron 6 of 39) 78734 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 454-10 chr1 173632785 173633083 + 2 NA intron (NM_198493, intron 3 of 5) L1M1|LINE|L1 -2404 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 915-8 chr2 53679948 53680796 + 2 NA intron (NM_001201965, intron 8 of 8) L1PA13|LINE|L1 -87411 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 386-98 chr14 60023327 60023607 + 2 NA intron (NR_075071, intron 27 of 32) intron (NR_075071, intron 27 of 32) -68444 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 232-372 chr8 86765242 86765415 + 2 NA Intergenic LTR8B|LTR|ERV1 -21653 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 503-298 chr8_KI270820v1_alt 14407 14789 + 2 NA Intergenic LTR16|LTR|ERVL 8083 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 169-114 chr7 16124206 16124370 + 2 NA intron (NM_001101426, intron 9 of 9) L1MA5|LINE|L1 -86198 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 274-296 chr4 163326778 163326987 + 2 NA intron (NM_000909, intron 1 of 2) intron (NM_000909, intron 1 of 2) 5714 NM_000909 4886 Hs.519057 NM_000909 ENSG00000164128 NPY1R NPY1-R|NPYR neuropeptide Y receptor Y1 protein-coding 305-279 chr2 157452458 157452716 + 2 NA Intergenic L1ME3G|LINE|L1 -8498 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 346-283 chr21 26742992 26743290 + 2 NA Intergenic Intergenic 102268 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 285-131 chr15 49353925 49354091 + 2 NA intron (NM_152647, intron 13 of 15) intron (NM_152647, intron 13 of 15) -69234 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 290-143 chr15 33425952 33426146 + 2 NA intron (NM_001243996, intron 1 of 102) intron (NM_001243996, intron 1 of 102) 115082 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 309-316 chr21 23907924 23908145 + 2 NA Intergenic L2c|LINE|L2 413343 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 420-285 chr8 79361208 79361493 + 2 NA Intergenic Intergenic 29162 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 477-306 chrX 96221021 96221381 + 2 NA Intergenic Intergenic 116701 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 251-78 chr13 53217121 53217296 + 2 NA Intergenic Intergenic -65308 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 465-291 chr8 101750377 101750754 + 2 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 40404 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 299-421 chr7 53971997 53972210 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -160172 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 314-49 chr1 238598011 238598284 + 2 NA Intergenic Intergenic -112130 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 215-59 chr11 116556028 116556219 + 2 NA Intergenic L1M4a1|LINE|L1 -83299 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 432-187 chr3 143550755 143551124 + 2 NA intron (NM_173653, intron 9 of 15) MLT1C|LTR|ERVL-MaLR 208693 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 275-16 chr1 176611552 176611714 + 2 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 148458 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 347-346 chr4 60774126 60774405 + 2 NA Intergenic L1MA3|LINE|L1 -148354 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 323-548 chr8 83988030 83988323 + 2 NA Intergenic L2c|LINE|L2 -194611 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 285-109 chr14 26901245 26901430 + 2 NA intron (NR_110041, intron 3 of 3) intron (NR_110041, intron 3 of 3) -7305 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 301-303 chr4 26769850 26770084 + 2 NA Intergenic L1MEc|LINE|L1 90277 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 217-22 chr1 208838127 208838279 + 2 NA Intergenic Intergenic 109515 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 237-92 chr13 82607462 82607652 + 2 NA Intergenic Intergenic 1274836 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 433-77 chr14 59883676 59883948 + 2 NA Intergenic L1MB8|LINE|L1 -13036 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 312-84 chr11 75126100 75126335 + 2 NA Intergenic Intergenic -24890 NM_007256 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 315-89 chr11 79213329 79213601 + 2 NA intron (NM_001098816, intron 3 of 33) L2a|LINE|L2 188644 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 1063-12 chr14 59701631 59702305 + 2 NA intron (NM_021136, intron 3 of 8) MIR3|SINE|MIR -54948 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 350-450 chr6 131926832 131927113 + 2 NA Intergenic (ATATTA)n|Simple_repeat|Simple_repeat 24400 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 399-335 chrX 29624935 29625299 + 2 NA intron (NM_014271, intron 5 of 10) MER58A|DNA|hAT-Charlie 50839 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 356-360 chr4 54027369 54027559 + 2 NA intron (NM_012110, intron 3 of 5) intron (NM_012110, intron 3 of 5) 37141 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 143-22 chr12 118800475 118800589 + 2 NA Intergenic L1MB7|LINE|L1 33004 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 353-298 chr21 33958797 33959023 + 2 NA intron (NR_134558, intron 2 of 2) L1MEf|LINE|L1 -17472 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 217-355 chr7 122927988 122928201 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -41335 NM_001009571 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 368-471 chr8 135145762 135145983 + 2 NA Intergenic HAL1|LINE|L1 -88259 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 222-104 chr13 106637975 106638135 + 2 NA Intergenic Intergenic -15825 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 230-85 chr12 61717233 61717398 + 2 NA intron (NM_178539, intron 4 of 4) intron (NM_178539, intron 4 of 4) 475524 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 404-339 chr9 25590212 25590484 + 2 NA Intergenic Intergenic 88510 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 312-393 chr4 162972260 162972541 + 2 NA Intergenic Intergenic 121228 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 383-28 chr1 240719840 240720146 + 2 NA Intergenic Intergenic -107838 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 207-87 chr14 86881203 86881350 + 2 NA Intergenic L2b|LINE|L2 -24502 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 479-101 chr2 35232237 35232622 + 2 NA Intergenic L1PA13|LINE|L1 -238976 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 376-341 chr6 25167062 25167280 + 2 NA Intergenic Intergenic -28779 NR_027626 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 530-193 chr5 35368333 35368735 + 2 NA Intergenic AluSx1|SINE|Alu -138047 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 272-366 chr5 152191093 152191291 + 2 NA intron (NR_109876, intron 1 of 2) L1MD2|LINE|L1 214087 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 341-305 chr20 56669691 56670017 + 2 NA Intergenic AluJo|SINE|Alu 40548 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 294-180 chr18 68361744 68361941 + 2 NA Intergenic MER41-int|LTR|ERV1 353266 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 146-65 chr4 115823208 115823315 + 2 NA Intergenic Intergenic -476464 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 355-423 chr5 177072916 177073225 + 2 NA intron (NM_001308213, intron 8 of 8) L2c|LINE|L2 -13845 NM_002011 2264 Hs.165950 NM_002011 ENSG00000160867 FGFR4 CD334|JTK2|TKF fibroblast growth factor receptor 4 protein-coding 319-34 chr1 192715339 192715546 + 2 NA promoter-TSS (NR_039624) promoter-TSS (NR_039624) -886 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 331-116 chr12 40534261 40534523 + 2 NA intron (NM_173600, intron 124 of 173) intron (NM_173600, intron 124 of 173) 140998 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 309-68 chr10 122002357 122002566 + 2 NA intron (NM_206862, intron 1 of 22) L1MC4|LINE|L1 13298 NM_206861 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 198-259 chr9 99628584 99628717 + 2 NA intron (NR_109802, intron 3 of 6) L2b|LINE|L2 191239 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 332-279 chr2 214130343 214130579 + 2 NA intron (NR_047660, intron 13 of 14) intron (NR_047660, intron 13 of 14) -280593 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 240-230 chr2 134868825 134869009 + 2 NA intron (NR_036549, intron 4 of 4) MIR3|SINE|MIR 11097 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 311-274 chr2 150131030 150131253 + 2 NA Intergenic Intergenic 125866 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 346-190 chr17 40743132 40743447 + 2 NA Intergenic L1MEd|LINE|L1 12042 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 170-130 chr7 51436001 51436143 + 2 NA Intergenic Intergenic -42816 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 319-400 chr5 17833801 17834029 + 2 NA intron (NR_134286, intron 2 of 7) L3|LINE|CR1 26641 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 248-300 chr5 22348371 22348536 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -134603 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 284-305 chr5 5746338 5746543 + 2 NA Intergenic L1MC3|LINE|L1 323763 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 322-463 chr6 86208402 86208650 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -529793 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 473-11 chr1 112096018 112096426 + 2 NA Intergenic L2c|LINE|L2 105686 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 231-237 chr3 133584800 133584989 + 2 NA intron (NM_001282765, intron 3 of 4) MER106A|DNA|hAT-Charlie 10460 NM_001282764 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 470-172 chr3 46840518 46840932 + 2 NA Intergenic L1M4a2|LINE|L1 -6630 NR_160554 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 192-120 chr20 39306383 39306529 + 2 NA Intergenic LTR16E2|LTR|ERVL -81708 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 481-135 chr2 34868782 34869112 + 2 NA Intergenic MIR|SINE|MIR 191390 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 200-79 chr14 76860958 76861129 + 2 NA intron (NM_194287, intron 11 of 13) intron (NM_194287, intron 11 of 13) 34635 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 164-84 chr4 41500619 41500774 + 2 NA intron (NM_001289122, intron 2 of 25) intron (NM_001289122, intron 2 of 25) -37461 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 573-39 chr11 79621675 79622122 + 2 NA Intergenic MIRc|SINE|MIR -180868 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 364-3 chr1 27362821 27363125 + 2 NA exon (NM_004672, exon 7 of 29) exon (NM_004672, exon 7 of 29) 3988 NM_001297609 9064 Hs.194694 NM_004672 ENSG00000142733 MAP3K6 ASK2|MAPKKK6|MEKK6 mitogen-activated protein kinase kinase kinase 6 protein-coding 321-142 chr12 114325037 114325245 + 2 NA Intergenic Intergenic 81003 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 200-256 chr7 81259942 81260058 + 2 NA Intergenic L1MCa|LINE|L1 301819 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 163-125 chr8 128542231 128542358 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 22385 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 290-212 chr2 80057785 80057975 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -191297 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 261-81 chr12 91754079 91754318 + 2 NA Intergenic L1MC5a|LINE|L1 387515 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 391-140 chr17 63400618 63400968 + 2 NA intron (NM_025185, intron 18 of 25) AluSx|SINE|Alu 39474 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 359-45 chr10 24763181 24763499 + 2 NA Intergenic Helitron1Na_Mam|RC|Helitron -39453 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 331-45 chr10 27624688 27624890 + 2 NA Intergenic Intergenic -119826 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 258-259 chr3 74208872 74209123 + 2 NA Intergenic MIRb|SINE|MIR 312143 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 318-367 chr3 107251392 107251617 + 2 NA intron (NR_028302, intron 1 of 3) intron (NR_028302, intron 1 of 3) 10812 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 194-11 chr1 111194581 111194762 + 2 NA exon (NM_024901, exon 7 of 12) exon (NM_024901, exon 7 of 12) 5975 NM_024901 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 222-127 chr16 8366685 8366841 + 2 NA Intergenic MIR|SINE|MIR 223075 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 332-355 chr3 177895963 177896155 + 2 NA intron (NR_110826, intron 2 of 2) intron (NR_110826, intron 2 of 2) 79194 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 318-340 chr22 31016405 31016639 + 2 NA Intergenic L1M4|LINE|L1 47311 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 551-123 chr3 100203603 100203960 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 17957 NR_028357 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 354-113 chr12 101540103 101540293 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -54733 NM_206821 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 397-71 chr13 63611497 63611864 + 2 NA Intergenic L1MA7|LINE|L1 -125755 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 311-479 chr7 103672708 103672979 + 2 NA intron (NM_005045, intron 11 of 64) MIR|SINE|MIR -226636 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 272-10 chr1 96480234 96480413 + 2 NA Intergenic AluSx|SINE|Alu -106198 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 254-438 chr9 29042625 29042847 + 2 NA intron (NM_001354574, intron 1 of 5) L1MA7|LINE|L1 -153781 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 298-81 chr11 99158828 99159032 + 2 NA intron (NM_001243270, intron 1 of 23) A-rich|Low_complexity|Low_complexity 137981 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 316-54 chr10 16314510 16314669 + 2 NA Intergenic Intergenic -122354 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 341-179 chr16 6946522 6946741 + 2 NA intron (NM_001142334, intron 1 of 13) AluJo|SINE|Alu 172822 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 585-2 chr1 37095605 37095938 + 2 NA Intergenic Intergenic -61256 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 725-11 chr10 104569891 104570396 + 2 NA Intergenic L1MA8|LINE|L1 -71147 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 416-348 chr9 3478062 3478347 + 2 NA intron (NM_001282116, intron 1 of 16) L1M4|LINE|L1 11283 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 385-415 chrX 63543000 63543269 + 2 NA intron (NR_152610, intron 1 of 4) L1PA10|LINE|L1 17961 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 299-213 chr2 105717466 105717656 + 2 NA Intergenic Intergenic -27351 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 709-35 chr2 2306479 2307075 + 2 NA intron (NM_015025, intron 1 of 24) L2c|LINE|L2 -12455 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 199-85 chr18 3385874 3386012 + 2 NA Intergenic L1M5|LINE|L1 -25984 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 492-25 chr10 69609742 69610098 + 2 NA Intergenic AluJr4|SINE|Alu -20327 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 224-326 chr8 86771568 86771743 + 2 NA Intergenic Intergenic -27980 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 197-56 chr14 50337491 50337656 + 2 NA intron (NM_001282236, intron 7 of 8) AluJr4|SINE|Alu 25249 NM_001370605 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 357-47 chr10 110916620 110916950 + 2 NA intron (NM_001195304, intron 2 of 4) intron (NM_001195304, intron 2 of 4) 2151 NM_001195306 92482 Hs.232543 NM_001195304 ENSG00000214413 BBIP1 BBIP10|BBS18|NCRNA00081|bA348N5.3 BBSome interacting protein 1 protein-coding 836-62 chr8 126732285 126732871 + 2 NA Intergenic AluSx1|SINE|Alu -174100 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 381-196 chr2 78637090 78637355 + 2 NA Intergenic Intergenic 91691 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 378-379 chr6 88031000 88031353 + 2 NA Intergenic LTR76|LTR|ERV1 -16665 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 331-318 chr20 46869557 46869816 + 2 NA Intergenic Intergenic -24938 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 1026-2 chr1 106674201 106674979 + 2 NA Intergenic Intergenic -143649 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 173-19 chr11 92742287 92742434 + 2 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 173268 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 314-600 chr9 27095500 27095800 + 2 NA Intergenic L2|LINE|L2 -13491 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 398-285 chr5 173373736 173374047 + 2 NA Intergenic Intergenic 26436 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 289-439 chr7 53901456 53901671 + 2 NA Intergenic MER6|DNA|TcMar-Tigger -89632 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 303-329 chr4 124069894 124070159 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 295762 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 172-8 chr1 242187149 242187274 + 2 NA intron (NM_001320272, intron 6 of 10) intron (NM_001320272, intron 6 of 10) -188113 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 628-11 chr1 106530212 106530669 + 2 NA Intergenic L1MCa|LINE|L1 -287799 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 283-195 chr18 41663595 41663825 + 2 NA Intergenic Intergenic -143033 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 413-23 chr1 202787593 202787936 + 2 NA intron (NM_001314042, intron 1 of 27) AluSx3|SINE|Alu 21706 NM_006618 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 211-216 chr4 112754237 112754401 + 2 NA intron (NM_001354269, intron 1 of 43) MIR3|SINE|MIR 48301 NM_001354269 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 221-127 chr18 64150251 64150433 + 2 NA intron (NR_033881, intron 2 of 9) intron (NR_033881, intron 2 of 9) -1316 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 304-130 chr13 92927647 92927822 + 2 NA Intergenic L1ME2|LINE|L1 -117607 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 601-33 chr12 114184692 114185096 + 2 NA Intergenic AluSx1|SINE|Alu 56876 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 529-168 chr5 3970797 3971254 + 2 NA Intergenic L1MC3|LINE|L1 375193 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 145-40 chr18 2548348 2548438 + 2 NA intron (NM_022840, intron 5 of 8) L2|LINE|L2 23112 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 336-175 chr15 58273620 58273888 + 2 NA Intergenic L1MEg|LINE|L1 135373 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 276-413 chr6 127569038 127569214 + 2 NA Intergenic Intergenic -8048 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 217-222 chr3 44602863 44603065 + 2 NA intron (NM_001351734, intron 2 of 6).2 L1MEc|LINE|L1 18000 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 491-89 chr17 54396891 54397256 + 2 NA Intergenic Intergenic -503618 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 321-568 chr8 116273824 116273988 + 2 NA intron (NR_046215, intron 1 of 13) L1ME3Cz|LINE|L1 51153 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 531-128 chr2 205815064 205815447 + 2 NA Intergenic Intergenic 132754 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 156-113 chr9 94020233 94020315 + 2 NA Intergenic L1ME4a|LINE|L1 -10539 NM_001253830 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 236-325 chr7 40787035 40787257 + 2 NA intron (NM_024728, intron 14 of 14) L1MEg|LINE|L1 192793 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 466-125 chr2 61363662 61364034 + 2 NA intron (NM_014709, intron 10 of 79) L1MB4|LINE|L1 53529 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 221-313 chr8 138379127 138379316 + 2 NA intron (NM_001362965, intron 1 of 19) MIRb|SINE|MIR 118040 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 619-50 chr14 87254786 87255291 + 2 NA Intergenic Intergenic 349260 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 459-205 chr4 36482560 36482899 + 2 NA Intergenic Intergenic -56301 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 335-69 chr10 99438118 99438383 + 2 NA Intergenic Intergenic -7626 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 338-556 chr8 113856219 113856510 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -419425 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 166-70 chr3 28817339 28817472 + 2 NA Intergenic L1ME3|LINE|L1 242127 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 296-493 chr9 21243850 21244046 + 2 NA Intergenic Intergenic -3943 NM_002172 3448 Hs.93907 NM_002172 ENSG00000228083 IFNA14 IFN-alphaH|LEIF2H interferon alpha 14 protein-coding 347-203 chr2 37678930 37679201 + 2 NA Intergenic Intergenic -6530 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 196-124 chr2 57388533 57388672 + 2 NA Intergenic L1M1|LINE|L1 -519049 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 442-34 chr10 96282163 96282550 + 2 NA Intergenic Intergenic -10780 NM_001114094 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 575-52 chr14 65346609 65347157 + 2 NA Intergenic Intergenic -11700 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 418-42 chr11 50578275 50578596 + 2 NA Intergenic ALR/Alpha|Satellite|centr 169288 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 184-66 chr15 70875544 70875665 + 2 NA intron (NM_001284357, intron 2 of 16) intron (NM_001284357, intron 2 of 16) 16829 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 387-27 chr1 247243002 247243372 + 2 NA Intergenic Intergenic -12885 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 377-290 chr4 67165321 67165659 + 2 NA Intergenic L1MC1|LINE|L1 256510 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 221-94 chr15 94204578 94204742 + 2 NA Intergenic Intergenic -93541 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 222-362 chr8 48894157 48894335 + 2 NA Intergenic Intergenic 27183 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 408-69 chr11 97587031 97587406 + 2 NA Intergenic Intergenic 1078793 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 199-45 chr12 14919007 14919163 + 2 NA intron (NM_152321, intron 4 of 6) intron (NM_152321, intron 4 of 6) 10040 NM_001300784 121506 Hs.162143 NM_152321 ENSG00000139055 ERP27 C12orf46|PDIA8 endoplasmic reticulum protein 27 protein-coding 365-184 chr2 43870743 43871019 + 2 NA intron (NM_001357321, intron 6 of 12) intron (NM_001357321, intron 6 of 12) 31910 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 467-191 chr3 174301960 174302354 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -381361 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 244-347 chr7 78687238 78687393 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -321673 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 305-281 chr2 168445553 168445771 + 2 NA Intergenic AluY|SINE|Alu -10610 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 207-115 chr18 71057473 71057631 + 2 NA Intergenic MER47C|DNA|TcMar-Tigger -406598 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 332-375 chr4 54595314 54595639 + 2 NA Intergenic Intergenic 11655 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 306-543 chr9 27659160 27659416 + 2 NA Intergenic Intergenic -85422 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 243-386 chr6 61749775 61749976 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 175745 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 205-135 chr2 44905816 44905948 + 2 NA Intergenic Intergenic 33006 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 253-441 chrX 93585899 93586105 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 87576 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 315-321 chr3 176898013 176898209 + 2 NA Intergenic L2b|LINE|L2 -81110 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 284-235 chr20 43020132 43020356 + 2 NA intron (NM_133170, intron 1 of 31) (GTAT)n|Simple_repeat|Simple_repeat 51501 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 662-97 chr8 56120203 56120714 + 2 NA Intergenic Intergenic -6476 NM_005372 4342 Hs.533432 NM_005372 ENSG00000172680 MOS MSV MOS proto-oncogene, serine/threonine kinase protein-coding 499-222 chr6 47877493 47877875 + 2 NA TTS (NM_001013732) TTS (NM_001013732) 90616 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 204-177 chr21 28955602 28955757 + 2 NA intron (NM_015565, intron 16 of 29) AluSg|SINE|Alu 37198 NM_001320766 26046 Hs.288773 NM_015565 ENSG00000198862 LTN1 C21orf10|C21orf98|RNF160|ZNF294 listerin E3 ubiquitin protein ligase 1 protein-coding 361-486 chr9 117902774 117903097 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 198532 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 291-181 chr18 2478109 2478354 + 2 NA Intergenic L1MCa|LINE|L1 93274 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 372-167 chr15 81921690 81921998 + 2 NA Intergenic L1M4c|LINE|L1 124174 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 349-242 chr2 21374895 21375089 + 2 NA Intergenic L2b|LINE|L2 251006 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 498-84 chr14 66347908 66348293 + 2 NA Intergenic L1M3|LINE|L1 -138271 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 212-301 chr7 39829997 39830204 + 2 NA Intergenic Intergenic 96532 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 337-483 chr6 45562315 45562512 + 2 NA Intergenic Intergenic 140138 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 338-574 chr8 142348679 142349008 + 2 NA intron (NM_001366903, intron 2 of 9) intron (NM_001366903, intron 2 of 9) 54339 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 298-135 chr15 25233589 25233767 + 2 NA promoter-TSS (NR_003350) promoter-TSS (NR_003350) -569 NR_003350 100033809 NR_003350 ENSG00000201992 SNORD115-35 HBII-52-35 small nucleolar RNA, C/D box 115-35 snoRNA 449-183 chr4 16738827 16739201 + 2 NA intron (NM_001304435, intron 2 of 7) GA-rich|Low_complexity|Low_complexity 159631 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 665-28 chr14 43073551 43074023 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 1433496 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 166-10 chr11 33442712 33442834 + 2 NA intron (NM_012194, intron 1 of 20) L1MEd|LINE|L1 66665 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 257-305 chr4 115600468 115600646 + 2 NA Intergenic Intergenic -486937 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 237-104 chr14 62938279 62938511 + 2 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 107063 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 419-311 chr9 80396660 80396878 + 2 NA Intergenic L1ME1|LINE|L1 421746 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 312-89 chr11 110884540 110884763 + 2 NA Intergenic MIR|SINE|MIR -171462 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 350-425 chr5 165766426 165766662 + 2 NA Intergenic L1MA8|LINE|L1 1159826 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 496-220 chr5 111300658 111300963 + 2 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 76426 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 419-173 chr3 6069351 6069652 + 2 NA Intergenic MIRb|SINE|MIR 735948 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 318-323 chr20 58783243 58783417 + 2 NA Intergenic Intergenic 9905 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 133-73 chr7 1152474 1152560 + 2 NA TTS (NR_158186) TTS (NR_158186) 7679 NM_182491 90637 Hs.648111 NM_182491 ENSG00000178381 ZFAND2A AIRAP zinc finger AN1-type containing 2A protein-coding 211-158 chr2 213751012 213751165 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -6979 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 408-310 chr7 8066760 8067035 + 2 NA intron (NM_138426, intron 5 of 7) L1PA15|LINE|L1 98101 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 665-85 chr6 72536928 72537532 + 2 NA Intergenic Intergenic -84613 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 230-291 chr5 28323775 28323925 + 2 NA Intergenic Intergenic -36185 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 255-77 chr12 50499529 50499724 + 2 NA Intergenic L1M5|LINE|L1 -5359 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 228-174 chr2 110997426 110997641 + 2 NA intron (NM_001371254, intron 15 of 18) L1M6|LINE|L1 118055 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 334-541 chr8 93897794 93898034 + 2 NA Intergenic Intergenic 18205 NR_039602 100616169 NR_039602 ENSG00000284288 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 251-330 chr6 47849816 47850042 + 2 NA Intergenic MIR|SINE|MIR 62861 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 800-67 chr8 137137994 137138417 + 2 NA Intergenic Intergenic 275383 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 361-58 chr10 112092178 112092511 + 2 NA Intergenic Intergenic 91421 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 386-146 chr19 12272096 12272340 + 2 NA 3' UTR (NM_001164276, exon 5 of 5) 3' UTR (NM_001164276, exon 5 of 5) 22394 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 331-187 chr16 13891640 13891956 + 2 NA Intergenic L1M4|LINE|L1 -28359 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 275-280 chr4 159922204 159922466 + 2 NA Intergenic Intergenic -144551 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 347-513 chr8 85587888 85588099 + 2 NA Intergenic MER50B|LTR|ERV1 67683 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 219-233 chr3 74413388 74413539 + 2 NA intron (NM_020872, intron 4 of 21) Charlie8|DNA|hAT-Charlie 107677 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 414-151 chr2 71765480 71765851 + 2 NA Intergenic Intergenic 298966 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 376-39 chr10 22170283 22170507 + 2 NA Intergenic L1M4|LINE|L1 39588 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 248-369 chr7 22095636 22095832 + 2 NA Intergenic Intergenic 98011 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 274-381 chr8 68248865 68249044 + 2 NA Intergenic AluSq2|SINE|Alu -81419 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 414-48 chr11 77806060 77806361 + 2 NA intron (NM_016578, intron 1 of 15) Tigger20a|DNA|TcMar-Tigger 14624 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 391-21 chr1 190735686 190736010 + 2 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 110958 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 287-374 chr7 9333278 9333432 + 2 NA Intergenic Intergenic -300915 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 712-72 chr5 22990419 22991013 + 2 NA Intergenic L1M1|LINE|L1 -137372 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 376-329 chr5 100682679 100682890 + 2 NA Intergenic L1M2|LINE|L1 133781 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 243-399 chr6 142296536 142296729 + 2 NA Intergenic L2|LINE|L2 -5287 NM_020455 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 201-48 chr11 84329577 84329708 + 2 NA intron (NM_001142699, intron 7 of 27) THE1C|LTR|ERVL-MaLR -12303 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 125-26 chr2 58798396 58798487 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 277688 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 271-250 chr22 32590302 32590536 + 2 NA intron (NM_003490, intron 7 of 13) L1ME3B|LINE|L1 115182 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 451-109 chr2 22900758 22901098 + 2 NA Intergenic Intergenic 364449 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 527-69 chr13 60808152 60808635 + 2 NA Intergenic L3b|LINE|CR1 135438 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 574-67 chr2 33364974 33365363 + 2 NA intron (NM_206943, intron 30 of 33) intron (NM_206943, intron 30 of 33) -53348 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 303-284 chr3 76056592 76056749 + 2 NA Intergenic Intergenic -271121 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 233-251 chr4 17372766 17372928 + 2 NA Intergenic Intergenic -51965 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 537-212 chr6 49162855 49163273 + 2 NA Intergenic Intergenic 300189 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 337-493 chr6 71246171 71246481 + 2 NA Intergenic Intergenic -42485 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 471-287 chr9 93733882 93734196 + 2 NA Intergenic L1PA13|LINE|L1 -85318 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 158-94 chr5 67066439 67066556 + 2 NA intron (NM_001297651, intron 2 of 25) L1ME4a|LINE|L1 61842 NM_001290227 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 325-486 chr6 164865984 164866254 + 2 NA Intergenic L1M4c|LINE|L1 -44056 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 177-109 chr4 30607165 30607319 + 2 NA Intergenic L1PA13|LINE|L1 -113127 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 339-492 chr6 71801815 71802138 + 2 NA Intergenic L1PB1|LINE|L1 -84727 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 671-66 chr3 126367907 126368325 + 2 NA Intergenic Intergenic -10708 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 241-408 chr8 131036450 131036641 + 2 NA intron (NM_001115, intron 1 of 17) L2a|LINE|L2 4364 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 213-23 chr1 209522340 209522488 + 2 NA Intergenic Intergenic -61300 NM_020439 57172 Hs.199068 NM_020439 ENSG00000008118 CAMK1G CLICK3|CLICKIII|VWS1|dJ272L16.1 calcium/calmodulin dependent protein kinase IG protein-coding 429-106 chr16 26013414 26013710 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -11675 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 400-21 chr1 194938542 194938905 + 2 NA Intergenic L1MC2|LINE|L1 1149992 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 775-4 chr1 182526218 182526904 + 2 NA intron (NM_001366934, intron 11 of 22) AluJb|SINE|Alu 62695 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 205-102 chr15 79775644 79775796 + 2 NA Intergenic L2c|LINE|L2 121277 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 245-179 chr2 16093513 16093675 + 2 NA Intergenic Intergenic 43167 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 352-204 chr19 16755814 16756052 + 2 NA intron (NM_001007525, intron 6 of 18) Tigger2a|DNA|TcMar-Tigger 24741 NM_001347994 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 801-56 chr8 54481936 54482493 + 2 NA Intergenic Intergenic 24279 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 201-197 chr5 64046090 64046225 + 2 NA Intergenic L1M1|LINE|L1 -83865 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 294-510 chrUn_KI270538v1 17259 17495 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 387-332 chr7 10323827 10324153 + 2 NA Intergenic Intergenic -378686 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 254-387 chr7 93861838 93862061 + 2 NA Intergenic L1MDa|LINE|L1 28804 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 213-11 chr1 92158578 92158729 + 2 NA Intergenic L1MC1|LINE|L1 -10271 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 247-255 chr3 33209342 33209531 + 2 NA intron (NM_015551, intron 2 of 4) L1MEg|LINE|L1 9374 NM_015551 26032 Hs.196647 NM_015551 ENSG00000173705 SUSD5 - sushi domain containing 5 protein-coding 517-133 chr2 86268125 86268499 + 2 NA intron (NM_001164731, intron 1 of 5) L1MC|LINE|L1 68855 NM_016622 51318 Hs.433439 NM_016622 ENSG00000132313 MRPL35 L35mt|MRP-L35 mitochondrial ribosomal protein L35 protein-coding 254-342 chr6 45078213 45078370 + 2 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 119479 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 117-13 chr15 97347273 97347339 + 2 NA Intergenic MLT2B4|LTR|ERVL 174505 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 261-377 chr8 82528257 82528454 + 2 NA Intergenic L1MEc|LINE|L1 -383749 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 847-26 chr2 6741923 6742465 + 2 NA intron (NR_038369, intron 1 of 5) intron (NR_038369, intron 1 of 5) 28117 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 389-187 chr2 145744695 145745006 + 2 NA Intergenic MIRb|SINE|MIR -842207 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 305-397 chr4 91619198 91619394 + 2 NA Intergenic Charlie6|DNA|hAT-Charlie 658006 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 171-25 chr12 43940917 43941053 + 2 NA intron (NM_001286213, intron 2 of 6) intron (NM_001286213, intron 2 of 6) 104904 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 518-32 chr10 68960803 68961097 + 2 NA intron (NM_001256910, intron 2 of 14) intron (NM_001256910, intron 2 of 14) 4510 NM_001256910 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 178-45 chr14 67991744 67991883 + 2 NA intron (NM_133509, intron 7 of 10) L1M1|LINE|L1 168221 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 192-51 chr12 76215190 76215360 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -44608 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 203-75 chr15 58287769 58287900 + 2 NA Intergenic HAL1ME|LINE|L1 -144157 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 341-37 chr1 175647053 175647371 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 96383 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 281-289 chr3 65980148 65980346 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -25689 NR_145422 151877 Hs.476636 NR_145422 ENSG00000272610 MAGI1-IT1 - MAGI1 intronic transcript 1 ncRNA 325-94 chr11 17611738 17612004 + 2 NA intron (NM_001277269, intron 35 of 54) intron (NM_001277269, intron 35 of 54) 64498 NM_001292063 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 468-232 chr4 154862709 154863164 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 81431 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 202-181 chr4 30392421 30392602 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -327858 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 237-106 chr14 65882449 65882645 + 2 NA Intergenic L1MA4|LINE|L1 411445 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 362-345 chr5 37886943 37887138 + 2 NA Intergenic Intergenic 46602 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 379-37 chr10 39195813 39196009 + 2 NA Intergenic ALR/Alpha|Satellite|centr 499315 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 233-170 chr2 76568773 76568972 + 2 NA Intergenic Intergenic -417093 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 293-259 chr3 56377162 56377415 + 2 NA intron (NR_132749, intron 2 of 17) intron (NR_132749, intron 2 of 17) 91179 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 337-221 chr18 38508994 38509320 + 2 NA Intergenic LTR8|LTR|ERV1 852022 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 560-57 chr15 71373237 71373681 + 2 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -173777 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 411-20 chr1 234685103 234685400 + 2 NA Intergenic L1MC5a|LINE|L1 -38791 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 440-148 chr21 46106066 46106413 + 2 NA intron (NM_058174, intron 1 of 27) intron (NM_058174, intron 1 of 27) 8120 NM_058175 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 328-402 chr4 63042680 63042885 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -881017 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 200-230 chr5 140986847 140986997 + 2 NA intron (NM_018911, intron 3 of 3) MER5A|DNA|hAT-Charlie 20155 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 262-128 chr14 66631530 66631720 + 2 NA intron (NM_001024218, intron 1 of 21) intron (NM_001024218, intron 1 of 21) 124218 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 676-28 chr13 76075292 76075831 + 2 NA Intergenic L1M2|LINE|L1 -140429 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 313-480 chr6 140535156 140535341 + 2 NA Intergenic L1MA1|LINE|L1 -148566 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 311-5 chr1 50281632 50281839 + 2 NA Intergenic Intergenic 141708 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 367-463 chr8 119548367 119548697 + 2 NA Intergenic L1ME1|LINE|L1 44476 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 370-122 chr12 124064650 124064926 + 2 NA intron (NM_001347902, intron 2 of 4) LTR78|LTR|ERV1 91573 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 332-167 chr15 71307626 71307951 + 2 NA intron (NM_024817, intron 5 of 16) MER77|LTR|ERVL -118729 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 595-101 chr20 42729049 42729517 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 43800 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 783-6 chr1 240919056 240919551 + 2 NA intron (NM_001282773, intron 4 of 15) L1MC2|LINE|L1 -212969 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 233-219 chr22 47381649 47381805 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger 36156 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 624-104 chr5 161836218 161836706 + 2 NA Intergenic Intergenic -10729 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 521-45 chr11 41428590 41429032 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 30825 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 219-199 chr20 15686051 15686176 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 237201 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 263-259 chr3 80227993 80228141 + 2 NA Intergenic Intergenic -460069 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 361-418 chr7 69926517 69926782 + 2 NA intron (NM_015570, intron 2 of 18) L1MEc|LINE|L1 328174 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 316-358 chr3 100245554 100245737 + 2 NA Intergenic Intergenic -15347 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 229-38 chr10 81195637 81195803 + 2 NA Intergenic Intergenic 545923 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 247-197 chr2 78986066 78986252 + 2 NA Intergenic Intergenic -39543 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 223-72 chr13 28254570 28254726 + 2 NA intron (NM_175854, intron 6 of 18) intron (NM_175854, intron 6 of 18) -115474 NR_029383 100288730 Hs.123191 NR_029383 PAN3-AS1 - PAN3 antisense RNA 1 ncRNA 523-122 chr2 19509511 19509979 + 2 NA Intergenic L1MEg2|LINE|L1 -151122 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 461-186 chr4 32611823 32612104 + 2 NA Intergenic Intergenic 260925 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 124-52 chr4 35578161 35578252 + 2 NA Intergenic LTR52|LTR|ERVL 665733 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 358-289 chr3 7175814 7176113 + 2 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) -281946 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 280-388 chr7 80559180 80559447 + 2 NA Intergenic L1PA13|LINE|L1 -42894 NM_001001547 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 538-229 chr8 63919597 63920069 + 2 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 150403 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 382-60 chr11 50683614 50683934 + 2 NA Intergenic ALR/Alpha|Satellite|centr 274627 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 501-209 chr5 68770238 68770686 + 2 NA Intergenic MIR|SINE|MIR 259465 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 223-270 chr5 32264999 32265182 + 2 NA intron (NM_001294344, intron 6 of 13) intron (NM_001294344, intron 6 of 13) 47849 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 390-373 chr8 55653534 55653877 + 2 NA Intergenic L1M3c|LINE|L1 119673 NM_001363177 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 386-384 chr9 120633242 120633604 + 2 NA intron (NM_001080497, intron 2 of 5) L1MA5|LINE|L1 -53253 NM_001272039 55755 Hs.269560 NM_018249 ENSG00000136861 CDK5RAP2 C48|Cep215|MCPH3 CDK5 regulatory subunit associated protein 2 protein-coding 306-422 chr6 9682157 9682334 + 2 NA Intergenic Intergenic -722257 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 515-105 chr2 35887481 35887961 + 2 NA Intergenic Intergenic 416316 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 367-4 chr1 7314833 7315154 + 2 NA intron (NM_001349608, intron 4 of 21) intron (NM_001349608, intron 4 of 21) 74761 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 526-13 chr1 227576545 227576901 + 2 NA intron (NM_001367909, intron 1 of 3) L1PA13|LINE|L1 13167 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 425-194 chr3 182355488 182355767 + 2 NA Intergenic L1MC5|LINE|L1 130735 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 401-319 chr8 68105769 68106098 + 2 NA TTS (NM_025170) TTS (NM_025170) 153887 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 311-439 chr6 113662096 113662392 + 2 NA Intergenic Intergenic -12169 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 205-46 chr10 126268218 126268361 + 2 NA intron (NM_001288974, intron 3 of 18) L1MB3|LINE|L1 120188 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 135-13 chr12 40457297 40457417 + 2 NA intron (NM_173600, intron 43 of 173) intron (NM_173600, intron 43 of 173) 63963 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 357-463 chr8 134377281 134377623 + 2 NA Intergenic Intergenic -220619 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 215-203 chr3 121423895 121424104 + 2 NA non-coding (NR_145516, exon 29 of 29) non-coding (NR_145516, exon 29 of 29) 121989 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 299-487 chr9 85323685 85323856 + 2 NA Intergenic Intergenic 418259 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 383-176 chr2 8613609 8613867 + 2 NA Intergenic Intergenic -29946 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 373-243 chr21 28652926 28653222 + 2 NA Intergenic MER66C|LTR|ERV1 113756 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 550-180 chr5 61717844 61718240 + 2 NA intron (NR_126524, intron 3 of 3) intron (NR_126524, intron 3 of 3) 17656 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 278-75 chr12 79235439 79235664 + 2 NA intron (NM_001291901, intron 3 of 9) L1M5|LINE|L1 -183706 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 318-57 chr10 34979724 34979937 + 2 NA Intergenic Intergenic 94453 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 318-13 chr1 56981938 56982103 + 2 NA Intergenic Intergenic -15880 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 255-86 chr12 127991567 127991715 + 2 NA Intergenic MER66B|LTR|ERV1 -7750 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 279-385 chr7 29547340 29547501 + 2 NA Intergenic HAL1|LINE|L1 -16415 NM_175887 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 370-166 chr15 101550495 101550700 + 2 NA Intergenic L1MEg|LINE|L1 -60613 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 270-321 chr5 153186163 153186362 + 2 NA Intergenic Intergenic -213913 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 296-504 chrX 67932806 67932958 + 2 NA Intergenic L1MA2|LINE|L1 388259 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 254-396 chr8 5527338 5527531 + 2 NA Intergenic Intergenic -532520 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 477-55 chr11 30735245 30735506 + 2 NA Intergenic L1MEd|LINE|L1 -149022 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 259-202 chr2 85842605 85842855 + 2 NA intron (NM_001363847, intron 5 of 5) intron (NM_001363847, intron 5 of 5) 11441 NM_001354248 8869 Hs.415117 NM_003896 ENSG00000115525 ST3GAL5 SATI|SIAT9|SIATGM3S|SPDRS|ST3Gal V|ST3GalV ST3 beta-galactoside alpha-2,3-sialyltransferase 5 protein-coding 373-71 chr10 125551853 125552081 + 2 NA Intergenic Intergenic -22404 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 454-120 chr17 79650323 79650685 + 2 NA Intergenic Intergenic -39453 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 209-312 chr8 36116398 36116544 + 2 NA Intergenic L1MD1|LINE|L1 -406151 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 284-51 chr10 82118377 82118601 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 114431 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 358-473 chr8 79128439 79128689 + 2 NA Intergenic Intergenic -203624 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 271-482 chr9 91325322 91325517 + 2 NA intron (NM_001698, intron 3 of 9) intron (NM_001698, intron 3 of 9) 36505 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 335-59 chr10 63820740 63821045 + 2 NA Intergenic Intergenic -299002 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 356-268 chr2 179503524 179503791 + 2 NA intron (NR_148056, intron 5 of 9) L1PA5|LINE|L1 58931 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 353-561 chr9 112888495 112888709 + 2 NA intron (NM_033051, intron 1 of 3) MER3|DNA|hAT-Charlie 2274 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 485-201 chr4 43589591 43589985 + 2 NA Intergenic L1MA8|LINE|L1 -97245 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 603-82 chr2 48621521 48621963 + 2 NA intron (NM_001198594, intron 4 of 7) intron (NM_001198594, intron 4 of 7) 3886 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 446-201 chr3 132111180 132111579 + 2 NA Intergenic L1MA3|LINE|L1 -71773 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 313-291 chr2 208304595 208304815 + 2 NA intron (NM_001178000, intron 11 of 11) intron (NM_001178000, intron 11 of 11) 38438 NM_152671 200576 Hs.744997 NM_015040 ENSG00000115020 PIKFYVE CFD|FAB1|HEL37|PIP5K|PIP5K3|ZFYVE29 phosphoinositide kinase, FYVE-type zinc finger containing protein-coding 334-399 chr4 132567922 132568201 + 2 NA Intergenic Intergenic -23028 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 239-204 chr2 209655138 209655278 + 2 NA intron (NM_001039538, intron 5 of 14) intron (NM_001039538, intron 5 of 14) 75529 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 262-187 chr19 44567770 44567950 + 2 NA Intergenic L1MC4a|LINE|L1 -10943 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 380-77 chr11 116323208 116323545 + 2 NA Intergenic Intergenic -316046 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 314-258 chr19 58080183 58080478 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 17901 NM_001145544 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 180-96 chr20 59741659 59741753 + 2 NA intron (NM_183246, intron 1 of 11) intron (NM_183246, intron 1 of 11) 20496 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 381-341 chr6 123330126 123330402 + 2 NA intron (NM_006073, intron 23 of 40) intron (NM_006073, intron 23 of 40) -109340 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 298-103 chr12 131450794 131450947 + 2 NA Intergenic L1MB7|LINE|L1 103400 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 495-161 chr3 102591343 102591727 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 156520 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 320-468 chr5 158504497 158504711 + 2 NA Intergenic MIRc|SINE|MIR -94831 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 304-432 chr5 130493991 130494191 + 2 NA Intergenic L1MA2|LINE|L1 589626 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 177-34 chr12 5424656 5424793 + 2 NA Intergenic Intergenic -7384 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 302-149 chr15 93845249 93845431 + 2 NA Intergenic L1MDb|LINE|L1 -11220 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 210-288 chr8 91719054 91719239 + 2 NA Intergenic Intergenic 298534 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 373-181 chr2 12064361 12064600 + 2 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 57364 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 543-176 chr4 30269175 30269635 + 2 NA Intergenic Intergenic -450964 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 491-35 chr11 70809132 70809573 + 2 NA intron (NM_012309, intron 11 of 24) intron (NM_012309, intron 11 of 24) -53438 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 378-386 chr6 164078634 164078880 + 2 NA Intergenic Intergenic -407273 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 330-130 chr12 118489387 118489567 + 2 NA Intergenic LTR19A|LTR|ERV1 112922 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 282-370 chr5 40685132 40685409 + 2 NA intron (NM_000958, intron 2 of 2) intron (NM_000958, intron 2 of 2) 5355 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 609-126 chr7 36772347 36772877 + 2 NA Intergenic Intergenic -48063 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 167-58 chr2 102446910 102447063 + 2 NA intron (NM_003853, intron 9 of 11) intron (NM_003853, intron 9 of 11) 14697 NR_039930 100616157 NR_039930 ENSG00000264764 MIR4772 mir-4772 microRNA 4772 ncRNA 395-331 chr8 56952875 56953133 + 2 NA Intergenic MER77|LTR|ERVL 40863 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 376-90 chr12 129993204 129993572 + 2 NA Intergenic Intergenic 48954 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 252-326 chr5 33372574 33372747 + 2 NA Intergenic Intergenic -68036 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 313-259 chr2 71687229 71687391 + 2 NA TTS (NM_001130455) TTS (NM_001130455) 220611 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 677-52 chr21 30891344 30891773 + 2 NA Intergenic Intergenic -9978 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 706-65 chr6 97863398 97863972 + 2 NA Intergenic Intergenic -160846 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 533-122 chr20 61091079 61091609 + 2 NA Intergenic L1ME3|LINE|L1 12280 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 329-604 chr9 32192102 32192306 + 2 NA Intergenic MER67C|LTR|ERV1 -192399 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 268-342 chr6 62682855 62683109 + 2 NA Intergenic L2a|LINE|L2 -396755 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 163-45 chr14 46160649 46160770 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 96550 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 508-170 chr4 71921432 71921809 + 2 NA Intergenic Intergenic -110184 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 338-375 chr4 42686189 42686359 + 2 NA Intergenic Intergenic -29169 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 287-93 chr11 83374851 83375117 + 2 NA Intergenic L1MA2|LINE|L1 -88577 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 267-23 chr1 165331060 165331228 + 2 NA intron (NM_177398, intron 3 of 8) L1MEb|LINE|L1 25097 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 162 chr1 22304555 22304690 + 2 NA Intergenic L1ME1|LINE|L1 38383 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 224-7 chr1 49490743 49490938 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -18755 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 447-193 chr4 43833924 43834348 + 2 NA Intergenic LTR33B|LTR|ERVL -182725 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 531-169 chr4 22815766 22816118 + 2 NA intron (NR_102357, intron 4 of 4) L1MA2|LINE|L1 101853 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 221-173 chr22 36602006 36602198 + 2 NA intron (NM_006078, intron 1 of 3) L1MA9|LINE|L1 -72936 NM_003753 8664 Hs.55682 NM_003753 ENSG00000100353 EIF3D EIF3S7|eIF3-p66|eIF3-zeta eukaryotic translation initiation factor 3 subunit D protein-coding 240-329 chr4 103359611 103359827 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -65323 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 226-282 chr5 63466155 63466372 + 2 NA Intergenic MIRb|SINE|MIR 496029 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 245-148 chr15 95383499 95383705 + 2 NA Intergenic L1MC2|LINE|L1 -49491 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 528-95 chr15 67900458 67900890 + 2 NA Intergenic MER41B|LTR|ERV1 -60629 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 260-285 chr3 116126704 116126892 + 2 NA intron (NM_001318915, intron 1 of 8) AluSz6|SINE|Alu -221672 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 389-263 chr4 69981698 69982056 + 2 NA Intergenic Intergenic -14089 NM_003154 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 226-336 chr8 50784173 50784342 + 2 NA intron (NR_135797, intron 20 of 20) L1MDa|LINE|L1 620126 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 349-49 chr10 29982605 29982891 + 2 NA Intergenic Intergenic 76838 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 303-387 chr5 180092978 180093137 + 2 NA Intergenic Intergenic -21298 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 327-131 chr12 126565596 126565895 + 2 NA Intergenic Intergenic -116418 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 691-40 chr2 60006999 60007614 + 2 NA Intergenic Intergenic 375730 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 269-154 chr17 54527694 54527858 + 2 NA Intergenic MER110-int|LTR|ERV1 -372915 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 139-31 chr14 72074061 72074158 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 140582 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 390-187 chr2 76236581 76236796 + 2 NA Intergenic L1MA6|LINE|L1 -525773 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 442-14 chr1 115256317 115256569 + 2 NA Intergenic Intergenic -26591 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 371-173 chr2 95207175 95207458 + 2 NA Intergenic CpG 41507 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 258-166 chr18 7540918 7541159 + 2 NA Intergenic Intergenic -26278 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 217-362 chr8 77270910 77271077 + 2 NA Intergenic L1MB1|LINE|L1 -179704 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 290-455 chr8 107084503 107084695 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 251916 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 305-60 chr10 48295295 48295576 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -11204 NM_001278547 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 396-47 chr10 52352113 52352465 + 2 NA Intergenic MIR|SINE|MIR 38008 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 313-474 chr6 103194170 103194380 + 2 NA Intergenic Intergenic 1665271 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 258-237 chr20 59801023 59801203 + 2 NA intron (NM_080672, intron 7 of 12) L1MEc|LINE|L1 79903 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 543-43 chr10 107977036 107977397 + 2 NA intron (NR_125760, intron 4 of 4) L1PREC2|LINE|L1 92077 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 235-324 chr7 41169082 41169311 + 2 NA Intergenic Intergenic 67592 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 276-190 chr17 53768684 53768902 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -54134 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 222-269 chr4 71193960 71194141 + 2 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 6764 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 333-282 chr2 202207327 202207611 + 2 NA intron (NM_001371393, intron 3 of 3) intron (NM_001371393, intron 3 of 3) 31128 NM_001005781 7341 Hs.81424 NM_003352 ENSG00000116030 SUMO1 DAP1|GMP1|OFC10|PIC1|SENP2|SMT3|SMT3C|SMT3H3|UBL1 small ubiquitin like modifier 1 protein-coding 307-48 chr10 39118832 39118999 + 2 NA Intergenic ALR/Alpha|Satellite|centr 422319 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 282-249 chr2 215882256 215882454 + 2 NA Intergenic Intergenic -38819 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 412-253 chr5 31012855 31013113 + 2 NA Intergenic Intergenic -180702 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 343-409 chr5 3967700 3967971 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 372003 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 228-113 chr15 68853467 68853676 + 2 NA Intergenic L1MC4|LINE|L1 -32676 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 236-118 chr14 76620933 76621119 + 2 NA Intergenic L3|LINE|CR1 -140442 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 374-2 chr1 43881899 43882260 + 2 NA intron (NR_073018, intron 6 of 10) intron (NR_073018, intron 6 of 10) 43457 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 515-10 chr1 103508678 103509153 + 2 NA intron (NM_001347929, intron 1 of 5) intron (NM_001347929, intron 1 of 5) 16596 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 735-9 chr11 36728278 36728812 + 2 NA Intergenic Intergenic -130266 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 364-23 chr1 110818542 110818891 + 2 NA Intergenic L1PA15|LINE|L1 -52483 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 638-142 chr6 156117511 156117950 + 2 NA Intergenic L3|LINE|CR1 170933 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 289-203 chr19 52709141 52709300 + 2 NA intron (NM_001161501, intron 4 of 4) intron (NM_001161501, intron 4 of 4) -18639 NM_001277947 55769 Hs.467210 NM_018300 ENSG00000167766 ZNF83 HPF1|ZNF816B zinc finger protein 83 protein-coding 660-6 chr1 191523577 191523996 + 2 NA Intergenic Intergenic -295288 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 465-79 chr14 44724061 44724457 + 2 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR 74867 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 406-25 chr1 219112873 219113187 + 2 NA intron (NR_038845, intron 3 of 4) L1PA13|LINE|L1 60758 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 320-389 chr4 63520528 63520748 + 2 NA Intergenic L1MCa|LINE|L1 888812 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 223-167 chr2 154290223 154290431 + 2 NA intron (NM_052917, intron 8 of 12) intron (NM_052917, intron 8 of 12) 167111 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 362-128 chr12 125833378 125833667 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 149852 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 482-305 chrX 94522696 94523085 + 2 NA Intergenic MLT2A1|LTR|ERVL 540336 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 276-472 chr9 16995199 16995381 + 2 NA Intergenic Intergenic -124620 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 295-171 chr16 82527456 82527696 + 2 NA Intergenic Intergenic -99393 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 231-307 chr6 51220328 51220494 + 2 NA Intergenic Intergenic -401459 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 208-57 chr12 32589228 32589373 + 2 NA intron (NM_001370298, intron 4 of 16) intron (NM_001370298, intron 4 of 16) 55007 NM_001304480 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 402-358 chr8 139255034 139255241 + 2 NA Intergenic Intergenic -341096 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 157-105 chr5 124603662 124603795 + 2 NA Intergenic (ATATAA)n|Simple_repeat|Simple_repeat 141384 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 567-10 chr1 160763290 160763648 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 24222 NM_021181 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 363-115 chr12 130229525 130229809 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 67208 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 599-42 chr17 14999914 15000286 + 2 NA Intergenic L1MB8|LINE|L1 -14705 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 275-368 chr8 126908102 126908355 + 2 NA Intergenic MIRc|SINE|MIR -104926 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 406-23 chr1 214277990 214278270 + 2 NA Intergenic Intergenic -3029 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 538-239 chr8 112236045 112236433 + 2 NA intron (NM_001363185, intron 63 of 66) intron (NM_001363185, intron 63 of 66) -407254 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 227-36 chr10 55715891 55716082 + 2 NA Intergenic Intergenic -88044 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 234-152 chr19 52459121 52459291 + 2 NA intron (NM_001366182, intron 3 of 5) L1MB2|LINE|L1 5653 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 414-305 chr7 43258463 43258835 + 2 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 107754 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 144-81 chr5 66036696 66036815 + 2 NA intron (NM_001253697, intron 14 of 25) L2c|LINE|L2 -91182 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 475-63 chr12 58514962 58515296 + 2 NA Intergenic Intergenic -76573 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 333-333 chr22 35245194 35245492 + 2 NA Intergenic L1MDa|LINE|L1 -12150 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 312-53 chr10 82879262 82879450 + 2 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -646436 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 451-139 chr3 3550285 3550602 + 2 NA Intergenic L1M4c|LINE|L1 -248988 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 555-31 chr11 37033444 37033817 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -435351 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 336-249 chr19 52037888 52038114 + 2 NA intron (NM_001322284, intron 4 of 4) intron (NM_001322284, intron 4 of 4) -9622 NM_025040 80110 Hs.292336 NM_025040 ENSG00000142556 ZNF614 - zinc finger protein 614 protein-coding 462-34 chr10 90257782 90258101 + 2 NA Intergenic Intergenic 282864 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 226-114 chr16 52198661 52198809 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -59829 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 225-389 chr9 77524300 77524466 + 2 NA intron (NR_121184, intron 4 of 4) intron (NR_121184, intron 4 of 4) 76734 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 689-98 chr8 103629611 103630051 + 2 NA intron (NM_001348497, intron 1 of 22) L1MDa|LINE|L1 -127921 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 427-100 chr18 69631024 69631330 + 2 NA intron (NM_152721, intron 3 of 7) intron (NM_152721, intron 3 of 7) 161246 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 277-205 chr2 114343117 114343331 + 2 NA Intergenic Intergenic -99417 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 519-100 chr2 35697836 35698201 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 226613 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 227-367 chr8 55546274 55546491 + 2 NA Intergenic Intergenic -25404 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 349-231 chr19 44315388 44315569 + 2 NA Intergenic AluSx3|SINE|Alu -10453 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 264-144 chr15 57075289 57075537 + 2 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -144017 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 302-126 chr14 55835983 55836223 + 2 NA Intergenic Intergenic -39429 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 413-254 chr5 170351158 170351441 + 2 NA Intergenic Intergenic -2188 NM_001034838 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 437-49 chr12 23571805 23572181 + 2 NA intron (NM_152989, intron 13 of 17) intron (NM_152989, intron 13 of 17) 12593 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 168-33 chr14 71060728 71060855 + 2 NA intron (NM_014982, intron 26 of 35) Tigger3|DNA|TcMar-Tigger 153332 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 358-106 chr13 57591751 57592025 + 2 NA Intergenic Intergenic -39856 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 481-167 chr20 5361120 5361576 + 2 NA Intergenic Intergenic -44616 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 237-164 chr2 17089217 17089429 + 2 NA Intergenic Intergenic -423489 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 426-226 chr5 24718512 24718823 + 2 NA Intergenic Intergenic -73689 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 249-188 chr2 48963777 48963929 + 2 NA exon (NM_181446, exon 9 of 9) exon (NM_181446, exon 9 of 9) -95750 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 193-122 chr2 188627194 188627361 + 2 NA Intergenic Intergenic 162846 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 278-439 chr8 134977427 134977653 + 2 NA Intergenic Intergenic 127605 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 238-195 chr2 213977763 213977952 + 2 NA intron (NR_047660, intron 11 of 14) MLT1F-int|LTR|ERVL-MaLR 219790 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 323-384 chr4 162074388 162074660 + 2 NA intron (NM_020116, intron 2 of 15) intron (NM_020116, intron 2 of 15) 51791 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 623-19 chr11 14943933 14944430 + 2 NA Intergenic ORSL|DNA|hAT-Tip100 28105 NM_001033953 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 358-191 chr2 15697707 15697993 + 2 NA intron (NR_110201, intron 2 of 5) intron (NR_110201, intron 2 of 5) 7068 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 407-133 chr2 17281685 17281938 + 2 NA Intergenic Intergenic 236629 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 339-340 chr22 35981916 35982229 + 2 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) -20442 NM_001349989 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 348-449 chr6 53966257 53966453 + 2 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) -32535 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 390-314 chr5 181030257 181030585 + 2 NA Intergenic L1MA8|LINE|L1 -9845 NM_001308245 153579 Hs.546502 NM_152547 ENSG00000165810 BTNL9 BTN3|BTN8|VDLS1900 butyrophilin like 9 protein-coding 336-209 chr17 39800130 39800353 + 2 NA intron (NM_001257409, intron 2 of 5) intron (NM_001257409, intron 2 of 5) -22016 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 368-413 chr7 2978771 2979131 + 2 NA intron (NM_032415, intron 1 of 24) intron (NM_032415, intron 1 of 24) 64916 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 280-57 chr10 84925490 84925654 + 2 NA Intergenic Intergenic 273333 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 315-399 chr5 147566386 147566632 + 2 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 6515 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 378-374 chr6 61514073 61514423 + 2 NA Intergenic ALR/Alpha|Satellite|centr -59882 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 306-566 chrX 155443294 155443516 + 2 NA Intergenic L1MA4A|LINE|L1 -14112 NR_036260 100422977 NR_036260 ENSG00000221603 MIR1184-3 - microRNA 1184-3 ncRNA 194-169 chr5 108272834 108272943 + 2 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 109210 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 463-82 chr13 97696604 97697004 + 2 NA Intergenic Intergenic -256871 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 355-312 chr3 12699803 12700149 + 2 NA Intergenic L1ME3|LINE|L1 -35775 NM_002880 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 221-135 chr2 683443 683616 + 2 NA Intergenic Intergenic -6123 NM_001352680 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 611-146 chr8 55431569 55432037 + 2 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 23518 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 497-279 chr8 87566733 87567124 + 2 NA Intergenic LTR78B|LTR|ERV1 307087 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 308-540 chr9 90698007 90698296 + 2 NA Intergenic Intergenic -55327 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 375-84 chr11 110808402 110808590 + 2 NA Intergenic Intergenic -95307 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 335-510 chr7 75627344 75627545 + 2 NA intron (NM_005338, intron 1 of 30) intron (NM_005338, intron 1 of 30) -99321 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 164-120 chrX 68069506 68069634 + 2 NA intron (NM_002547, intron 20 of 24) L2a|LINE|L2 363925 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 358-202 chr2 59949429 59949724 + 2 NA Intergenic Intergenic 433460 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 299-246 chr2 222997880 222998096 + 2 NA Intergenic L1MEf|LINE|L1 -53942 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 205-261 chr7 67870808 67870953 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -149373 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 337-336 chr3 11415574 11415873 + 2 NA intron (NM_001144912, intron 16 of 16) Tigger3b|DNA|TcMar-Tigger 143326 NM_001136031 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 523-148 chr2 240947899 240948240 + 2 NA intron (NM_001351305, intron 15 of 31) intron (NM_001351305, intron 15 of 31) 19382 NR_033841 200772 Hs.647893 NR_033841 ENSG00000233392 LOC200772 - uncharacterized LOC200772 ncRNA 308-226 chr2 53692713 53692885 + 2 NA intron (NM_001201965, intron 8 of 8) intron (NM_001201965, intron 8 of 8) -74984 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 775-11 chr10 39522238 39522707 + 2 NA Intergenic ALR/Alpha|Satellite|centr 825876 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 383-129 chr15 61998184 61998511 + 2 NA intron (NM_001018088, intron 16 of 81) L2a|LINE|L2 62100 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 329-262 chr2 18097394 18097635 + 2 NA Intergenic Intergenic 218847 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 199-190 chr4 124619654 124619846 + 2 NA Intergenic Intergenic -61316 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 273-442 chr8 56605334 56605577 + 2 NA Intergenic Intergenic -45632 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 332-368 chr4 32719065 32719291 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 368140 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 543-129 chr2 115668806 115669158 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 325167 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 257-453 chrX 70013542 70013698 + 2 NA intron (NM_001005609, intron 2 of 7) L1PB3|LINE|L1 -9237 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 140-17 chr11 97613907 97614014 + 2 NA Intergenic L1MB7|LINE|L1 1105535 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 498-104 chr17 31902165 31902577 + 2 NA promoter-TSS (NM_018428) promoter-TSS (NM_018428) -663 NM_018428 55813 Hs.589862 NM_018428 ENSG00000108651 UTP6 C17orf40|HCA66 UTP6 small subunit processome component protein-coding 296-412 chr6 114509413 114509674 + 2 NA Intergenic L1MD2|LINE|L1 -446666 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 275-255 chr3 177167973 177168125 + 2 NA intron (NM_001321194, intron 1 of 16) intron (NM_001321194, intron 1 of 16) 28429 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 717-81 chr7 137506215 137506693 + 2 NA intron (NM_001321710, intron 21 of 32) L1MC2|LINE|L1 -162721 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 275-273 chr4 107320867 107321134 + 2 NA Intergenic Intergenic -284687 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 234-206 chr2 237000957 237001140 + 2 NA Intergenic Intergenic 55119 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 255-377 chr7 29349784 29349998 + 2 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -129821 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 315-345 chr4 87733915 87734224 + 2 NA Intergenic L2b|LINE|L2 -65485 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 318-581 chr9 105625062 105625295 + 2 NA intron (NR_147213, intron 9 of 9) intron (NR_147213, intron 9 of 9) -37279 NM_005421 6887 Hs.247978 NM_005421 ENSG00000186051 TAL2 - TAL bHLH transcription factor 2 protein-coding 291-322 chr4 65138706 65138856 + 2 NA Intergenic L1M1|LINE|L1 -134281 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 163-19 chr10 51148763 51148858 + 2 NA intron (NM_006258, intron 1 of 17) Charlie23a|DNA|hAT-Charlie 74323 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 146-47 chr2 240504551 240504634 + 2 NA intron (NM_001282780, intron 9 of 13) L1M4|LINE|L1 -47892 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 295-275 chr22 25822537 25822708 + 2 NA intron (NM_001318245, intron 12 of 43) LTR2C|LTR|ERV1 80434 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 237-53 chr11 34922630 34922781 + 2 NA intron (NM_003477, intron 1 of 10) intron (NM_003477, intron 1 of 10) 6087 NM_003477 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 366-95 chr12 21586749 21587058 + 2 NA intron (NM_021957, intron 1 of 15) L1PB4|LINE|L1 17944 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 369-241 chr20 39093062 39093278 + 2 NA Intergenic MamGypLTR1a|LTR|Gypsy 130826 NR_033905 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 204-265 chr7 13138389 13138530 + 2 NA Intergenic L1ME3A|LINE|L1 450826 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 191-83 chr18 1190917 1191084 + 2 NA Intergenic Intergenic 168629 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 231-222 chr3 38366974 38367181 + 2 NA intron (NR_146068, intron 5 of 16) intron (NR_146068, intron 5 of 16) 20292 NM_005108 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 212-335 chr8 133964357 133964531 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 77948 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 280-189 chr2 36711662 36711925 + 2 NA intron (NM_001177969, intron 1 of 14) intron (NM_001177969, intron 1 of 14) 15086 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 385-306 chr5 113309694 113309945 + 2 NA intron (NM_001085377, intron 3 of 18) (TTTC)n|Simple_repeat|Simple_repeat -14881 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 302-385 chr6 69494132 69494392 + 2 NA Intergenic L1M3f|LINE|L1 302204 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 301-101 chr12 117828113 117828294 + 2 NA intron (NM_173598, intron 3 of 19) L2b|LINE|L2 140787 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 121-65 chr8 19963655 19963721 + 2 NA intron (NM_000237, intron 9 of 9) L1ME4a|LINE|L1 24435 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 334-120 chr12 126535034 126535253 + 2 NA Intergenic MIR|SINE|MIR -85816 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 690-61 chr2 169330483 169331114 + 2 NA intron (NM_004525, intron 1 of 78) intron (NM_004525, intron 1 of 78) 31736 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 368-137 chr14 46945529 46945784 + 2 NA intron (NM_001113498, intron 9 of 16) L1MEc|LINE|L1 -293875 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 305-174 chr16 26482611 26482795 + 2 NA Intergenic L1PA14|LINE|L1 457466 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 334-568 chr9 82627658 82627890 + 2 NA Intergenic Intergenic 435368 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 327-253 chr2 48393172 48393410 + 2 NA Intergenic AluJb|SINE|Alu -47475 NM_001135629 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 293-244 chr22 28050317 28050494 + 2 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -129793 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 690-84 chr5 107224281 107224686 + 2 NA Intergenic Intergenic -213469 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 255-107 chr14 51343034 51343246 + 2 NA intron (NR_038358, intron 1 of 4) intron (NR_038358, intron 1 of 4) 9747 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 146-18 chr12 5273320 5273420 + 2 NA Intergenic MIR|SINE|MIR -30219 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 347-474 chr7 68868902 68869109 + 2 NA Intergenic Intergenic 728619 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 328-455 chr5 67688109 67688313 + 2 NA Intergenic L1MB8|LINE|L1 -41422 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 653-32 chr12 118956238 118956693 + 2 NA Intergenic Intergenic -25076 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 211-78 chr13 90645754 90645960 + 2 NA Intergenic (ATATCT)n|Simple_repeat|Simple_repeat 152569 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 667-56 chr20 17107379 17107884 + 2 NA Intergenic L1PA4|LINE|L1 -118476 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 324-446 chr5 169889179 169889425 + 2 NA intron (NM_001346304, intron 1 of 3) intron (NM_001346304, intron 1 of 3) 91193 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 280-416 chr8 109383300 109383518 + 2 NA intron (NM_177531, intron 4 of 77) (AT)n|Simple_repeat|Simple_repeat 20948 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 359-198 chr18 13595111 13595311 + 2 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -15903 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 532-158 chr3 22973309 22973734 + 2 NA Intergenic Intergenic 229057 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 494-254 chr6 133538591 133538895 + 2 NA intron (NR_109982, intron 5 of 8) L1MB3|LINE|L1 -282404 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 365-116 chr14 31057376 31057585 + 2 NA intron (NM_001254728, intron 1 of 5) intron (NM_001254728, intron 1 of 5) 30837 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 433-110 chr17 59804771 59805111 + 2 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -36325 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 295-280 chr22 40114437 40114595 + 2 NA intron (NM_001024843, intron 1 of 23) AluJb|SINE|Alu -63409 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 328-137 chr14 28096754 28097053 + 2 NA Intergenic L2c|LINE|L2 -423682 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 530-243 chr7 118566503 118566872 + 2 NA Intergenic L1MB7|LINE|L1 341983 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 278-467 chrX 87756379 87756640 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 238707 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 543-107 chr18 64162683 64163102 + 2 NA intron (NR_033881, intron 2 of 9) L2b|LINE|L2 -13866 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 373-397 chr8 37341210 37341505 + 2 NA Intergenic Intergenic 152556 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 306-531 chr8 137671429 137671585 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -257919 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 410-329 chr9 26822369 26822594 + 2 NA Intergenic AluSp|SINE|Alu 70321 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 230-197 chr2 220015434 220015566 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie -108935 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 268-242 chr3 81817776 81817992 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -56239 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 433-104 chr16 81977173 81977466 + 2 NA Intergenic L1PA16|LINE|L1 34151 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 320-547 chr8 78868176 78868477 + 2 NA Intergenic L1MA2|LINE|L1 30797 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 647-2 chr1 40455463 40455835 + 2 NA intron (NM_001369565, intron 3 of 5) L1PA7|LINE|L1 5173 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 335-136 chr13 36433225 36433411 + 2 NA intron (NM_001111045, intron 2 of 8) intron (NM_001111045, intron 2 of 8) 823 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 683-14 chr11 36595437 36596060 + 2 NA intron (NM_001243786, intron 1 of 2) MIR|SINE|MIR 976 NM_001276724 119710 Hs.159376 NM_138787 ENSG00000166352 C11orf74 HEPIS|NWC chromosome 11 open reading frame 74 protein-coding 424-14 chr1 190002806 190003049 + 2 NA Intergenic Intergenic 473083 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 302-329 chr4 86374354 86374610 + 2 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -3615 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 325-161 chr14 42487090 42487409 + 2 NA Intergenic L1ME1|LINE|L1 880393 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 333-202 chr18 4567419 4567743 + 2 NA Intergenic L1MB7|LINE|L1 -112274 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 198-15 chr1 189183222 189183366 + 2 NA Intergenic Intergenic 1292716 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 420-255 chr6 101696077 101696448 + 2 NA intron (NM_001166247, intron 6 of 16) intron (NM_001166247, intron 6 of 16) 297277 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 574-7 chr1 214087598 214088071 + 2 NA Intergenic Intergenic 99301 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 350-348 chr4 59733518 59733759 + 2 NA Intergenic L1MC4a|LINE|L1 720065 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 173-123 chr7 4517690 4517832 + 2 NA Intergenic L1M4c|LINE|L1 -164534 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 258-439 chrX 82588877 82589093 + 2 NA Intergenic Intergenic -919305 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 183-168 chr8 138955592 138955752 + 2 NA Intergenic LTR33A|LTR|ERVL -41631 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 661-38 chr18 59968578 59969216 + 2 NA Intergenic Intergenic 68901 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 239-326 chr5 114256938 114257126 + 2 NA Intergenic L1PB4|LINE|L1 -105038 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 577-166 chr6 18071449 18071931 + 2 NA Intergenic Intergenic 50987 NM_198586 378884 Hs.348351 NM_198586 ENSG00000187566 NHLRC1 EPM2A|EPM2B|MALIN|bA204B7.2 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding 432-156 chr20 42191700 42192101 + 2 NA intron (NM_133170, intron 17 of 31) (TCAT)n|Simple_repeat|Simple_repeat -493583 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 242-114 chr15 25138032 25138207 + 2 NA TTS (NR_022009) TTS (NR_022009) 2477 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 805-24 chr2 191629146 191629768 + 2 NA Intergenic L1MB1|LINE|L1 -48615 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 233-399 chr9 77399681 77399901 + 2 NA intron (NM_001018037, intron 67 of 70) L1ME4b|LINE|L1 -47858 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 333-583 chr8 113644715 113644942 + 2 NA Intergenic Intergenic -207889 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 256-11 chr1 77609571 77609736 + 2 NA intron (NM_001308237, intron 4 of 13) L1MA9|LINE|L1 73005 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 405-149 chr2 112868911 112869282 + 2 NA Intergenic L2c|LINE|L2 -32317 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 252-388 chr7 8122192 8122343 + 2 NA intron (NR_146928, intron 13 of 14) intron (NR_146928, intron 13 of 14) 139785 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 357-479 chr9 72693645 72693957 + 2 NA intron (NM_138691, intron 6 of 23) intron (NM_138691, intron 6 of 23) 172000 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 295-413 chr6 87573770 87574056 + 2 NA intron (NR_146756, intron 1 of 19) HAL1b|LINE|L1 16074 NM_020320 57038 Hs.485910 NM_020320 ENSG00000146282 RARS2 ArgRS|DALRD2|PCH6|PRO1992|RARSL arginyl-tRNA synthetase 2, mitochondrial protein-coding 374-120 chr15 100467224 100467590 + 2 NA intron (NM_001290341, intron 12 of 13) MER58C|DNA|hAT-Charlie 76879 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 200-12 chr1 163278189 163278354 + 2 NA intron (NM_001254748, intron 2 of 5) L1MA5|LINE|L1 43520 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 241-351 chr6 163270053 163270232 + 2 NA intron (NM_001080379, intron 4 of 4) L1M5|LINE|L1 54331 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 557-118 chr2 214907742 214908108 + 2 NA intron (NR_110292, intron 2 of 3) intron (NR_110292, intron 2 of 3) 60978 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 327-266 chr2 103171270 103171570 + 2 NA Intergenic Intergenic -186991 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 236-58 chr10 129658637 129658817 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 184647 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 379-17 chr1 114970746 114970950 + 2 NA intron (NM_001282541, intron 27 of 31) L1PBa|LINE|L1 -58976 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 241-294 chr5 28567502 28567736 + 2 NA Intergenic Intergenic -279954 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 343-306 chr20 59173645 59173861 + 2 NA Intergenic Intergenic -17267 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 316-125 chr12 30022118 30022333 + 2 NA Intergenic MLT2D|LTR|ERVL -237466 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 307-216 chr19 36388751 36389040 + 2 NA 3' UTR (NM_133466, exon 5 of 5) 3' UTR (NM_133466, exon 5 of 5) -9694 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 522-141 chr2 110940900 110941324 + 2 NA intron (NM_001142807, intron 12 of 17) intron (NM_001142807, intron 12 of 17) 174476 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 597-81 chr2 217454725 217455163 + 2 NA intron (NR_026597, intron 3 of 12) HAL1ME|LINE|L1 172211 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 420-143 chr2 102663824 102664189 + 2 NA intron (NM_003048, intron 2 of 11) AluSz|SINE|Alu 44453 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 230-382 chr8 119240911 119241082 + 2 NA intron (NM_052886, intron 3 of 3) intron (NM_052886, intron 3 of 3) 5861 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 335-26 chr1 175794115 175794295 + 2 NA Intergenic AluJr|SINE|Alu -50610 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 364-444 chr8 87121281 87121579 + 2 NA intron (NM_173538, intron 4 of 10) L1MA7|LINE|L1 255015 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 210-26 chr10 35388652 35388799 + 2 NA intron (NM_001282852, intron 1 of 8) MLT1D|LTR|ERVL-MaLR 51851 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 387-102 chr14 43138846 43139040 + 2 NA Intergenic Intergenic 1368340 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 290-227 chr2 177606598 177606834 + 2 NA Intergenic Intergenic 12026 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 331-134 chr13 48898428 48898678 + 2 NA Intergenic Intergenic -77359 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 445-139 chr2 180759117 180759498 + 2 NA intron (NR_104324, intron 3 of 4) intron (NR_104324, intron 3 of 4) 67203 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 286-282 chr3 73462585 73462857 + 2 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) 11911 NM_001303141 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 367-152 chr16 72643146 72643446 + 2 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 21674 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 280-52 chr10 65174755 65174911 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -250315 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 430-186 chr3 30478348 30478651 + 2 NA Intergenic Intergenic -40369 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 302-109 chr12 114439907 114440081 + 2 NA Intergenic Intergenic -31552 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 298-341 chr4 124839446 124839613 + 2 NA Intergenic L1MA3|LINE|L1 -126797 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 407-102 chr16 60840273 60840600 + 2 NA Intergenic Intergenic 215330 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 313-319 chr22 19652175 19652354 + 2 NA Intergenic L1M4|LINE|L1 -62239 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 270-189 chr2 118357262 118357439 + 2 NA Intergenic L1MB4|LINE|L1 -170964 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 262-427 chr8 78648297 78648550 + 2 NA Intergenic Intergenic -17666 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 518-36 chr10 85986050 85986412 + 2 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 278557 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 317-164 chr15 47458898 47459168 + 2 NA intron (NM_001198999, intron 2 of 19) MLT1F2|LTR|ERVL-MaLR -258472 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 344-337 chr3 175766026 175766293 + 2 NA intron (NM_207015, intron 13 of 13) intron (NM_207015, intron 13 of 13) 10174 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 378-152 chr15 87064426 87064650 + 2 NA Intergenic L1MEg|LINE|L1 -76112 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 490-257 chr7 12863311 12863637 + 2 NA Intergenic MER52D|LTR|ERV1 175841 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 616-6 chr1 167759508 167759951 + 2 NA intron (NM_024569, intron 1 of 4) L2|LINE|L2 37747 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 512-197 chr4 108415177 108415671 + 2 NA Intergenic Intergenic -141809 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 200-159 chr20 56234227 56234397 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -14420 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 322-192 chr16 65236429 65236601 + 2 NA Intergenic Intergenic -59942 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 376-278 chr4 57263120 57263468 + 2 NA Intergenic Intergenic -152909 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 341-16 chr1 71378706 71379039 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 297548 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 673-99 chr5 93641750 93642182 + 2 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -21178 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 273-288 chr3 34153334 34153569 + 2 NA Intergenic Intergenic 354821 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 428-196 chr3 167063367 167063612 + 2 NA Intergenic Intergenic 164806 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 349-81 chr10 98912348 98912667 + 2 NA intron (NM_021828, intron 3 of 11) L1MA2|LINE|L1 12061 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 575-211 chr9 29631136 29631503 + 2 NA Intergenic L1MCa|LINE|L1 -417718 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 222-378 chr8 126349276 126349392 + 2 NA Intergenic L1PB2|LINE|L1 23839 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 217-402 chrX 94293362 94293546 + 2 NA Intergenic Intergenic 619248 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 272-481 chr9 115662905 115663050 + 2 NA Intergenic Intergenic 81262 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 401-342 chr9 27657131 27657512 + 2 NA Intergenic Intergenic -83455 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 245-372 chr9 95600225 95600463 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -83287 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 544-139 chr21 32235414 32235805 + 2 NA Intergenic Intergenic 43440 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 267-139 chr16 71255386 71255614 + 2 NA Intergenic Intergenic -24778 NM_001198543 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 478-74 chr14 27324272 27324713 + 2 NA intron (NR_148991, intron 2 of 2) L1MC1|LINE|L1 -288096 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 121-31 chr21 17913330 17913448 + 2 NA Intergenic MIRb|SINE|MIR -3951 NM_001204175 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 218-218 chr3 98449902 98450028 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -19515 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 616-119 chr4 55035432 55035909 + 2 NA Intergenic Intergenic 89925 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 386-110 chr14 87141431 87141723 + 2 NA Intergenic Intergenic 235799 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 348-529 chr8 119397251 119397451 + 2 NA Intergenic Intergenic -19095 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 402-57 chr12 8620888 8621155 + 2 NA Intergenic L1M3|LINE|L1 -8162 NM_001330343 57379 Hs.149342 NM_020661 ENSG00000111732 AICDA AID|ARP2|CDA2|HEL-S-284|HIGM2 activation induced cytidine deaminase protein-coding 483-238 chr7 34624125 34624544 + 2 NA intron (NR_033664, intron 2 of 4) MIRb|SINE|MIR -33884 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 532-123 chr2 79802667 79803000 + 2 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 63750 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 568-7 chr1 238611278 238611819 + 2 NA Intergenic L2b|LINE|L2 -125531 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 271-66 chr11 23256297 23256484 + 2 NA Intergenic Intergenic 162800 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 405-317 chr8 69965535 69965933 + 2 NA Intergenic AluSg|SINE|Alu 105518 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 255-57 chr11 39636575 39636772 + 2 NA Intergenic Intergenic 656457 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 369-364 chr6 130750792 130751042 + 2 NA Intergenic Intergenic -76488 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 684-132 chrX 58318314 58318861 + 2 NA Intergenic ALR/Alpha|Satellite|centr -407954 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 249-294 chr4 57377839 57377991 + 2 NA Intergenic Intergenic -47957 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 396-184 chr2 231543926 231544239 + 2 NA Intergenic AluSp|SINE|Alu -13637 NM_006056 10316 Hs.471619 NM_006056 ENSG00000171596 NMUR1 (FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R neuromedin U receptor 1 protein-coding 201-132 chr2 222957216 222957357 + 2 NA Intergenic L1MC4a|LINE|L1 -94644 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 232-17 chr1 181581374 181581555 + 2 NA intron (NM_001205293, intron 6 of 47) MER5A|DNA|hAT-Charlie 97947 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 633-67 chr2 153432811 153433155 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 45779 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 541-56 chr13 85206965 85207475 + 2 NA Intergenic AluY|SINE|Alu -59163 NR_126383 104355140 NR_126383 ENSG00000226370 LINC00375 - long intergenic non-protein coding RNA 375 ncRNA 412-204 chr3 1985479 1985814 + 2 NA Intergenic Intergenic -113157 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 586-83 chr2 195114142 195114584 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 383768 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 467-53 chr11 100060498 100060873 + 2 NA intron (NM_001243270, intron 8 of 23) AluSq|SINE|Alu 504540 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 544-8 chr1 64442223 64442630 + 2 NA Intergenic Intergenic -27703 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 194-174 chr5 176585446 176585589 + 2 NA intron (NM_017675, intron 19 of 31) MIR|SINE|MIR 24639 NM_052899 114787 Hs.150549 NM_052899 ENSG00000169258 GPRIN1 GRIN1 G protein regulated inducer of neurite outgrowth 1 protein-coding 329-541 chr7 64981110 64981337 + 2 NA intron (NM_001348050, intron 3 of 3) intron (NM_001348050, intron 3 of 3) 9813 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 561-89 chr19 36897854 36898246 + 2 NA intron (NM_001037232, intron 5 of 5) AluSx1|SINE|Alu 17989 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 231-203 chr21 36622640 36622798 + 2 NA Intergenic Intergenic -46150 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 306-511 chr8 92643630 92643875 + 2 NA intron (NR_125827, intron 2 of 4) intron (NR_125827, intron 2 of 4) 11742 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 361-431 chr8 27537055 27537355 + 2 NA intron (NM_001979, intron 13 of 18) L1MEd|LINE|L1 46062 NM_001256484 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 310-321 chr3 42297922 42298157 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -31854 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 699-61 chr20 42287469 42288010 + 2 NA intron (NM_133170, intron 12 of 31) L1MA5A|LINE|L1 -397744 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 158-49 chr2 8560975 8561095 + 2 NA non-coding (NR_110257, exon 6 of 6) non-coding (NR_110257, exon 6 of 6) 22757 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 268-277 chr4 63341996 63342203 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1067351 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 227-162 chr2 51779334 51779500 + 2 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -591231 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 251-341 chr6 81145221 81145400 + 2 NA Intergenic Intergenic 607371 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 624-26 chr11 108379876 108380320 + 2 NA intron (NR_147053, intron 10 of 12) ERVL-E-int|LTR|ERVL 87431 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 336-553 chr8 117686504 117686735 + 2 NA Intergenic Intergenic 165906 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 295-346 chr4 63588370 63588587 + 2 NA Intergenic Intergenic 820972 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 240-226 chr2 124957523 124957672 + 2 NA Intergenic AluJr|SINE|Alu 932310 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 153-44 chr17 75955888 75955991 + 2 NA exon (NM_007292, exon 5 of 14) exon (NM_007292, exon 5 of 14) -17707 NM_001319193 85302 Hs.720068 NM_001080542 ENSG00000188878 FBF1 Alb|FBF-1 Fas binding factor 1 protein-coding 511-78 chr15 88130435 88130836 + 2 NA intron (NM_001007156, intron 10 of 15) L1MC4a|LINE|L1 75339 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 131-12 chr10 72188693 72188791 + 2 NA intron (NM_001369110, intron 5 of 8) MIRb|SINE|MIR 27214 NM_001369089 51008 Hs.500007 NM_015947 ENSG00000138303 ASCC1 ASC1p50|CGI-18|SMABF2|p50 activating signal cointegrator 1 complex subunit 1 protein-coding 277-8 chr1 59989418 59989644 + 2 NA TTS (NM_152377) TTS (NM_152377) -62733 NR_134982 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 292-274 chr3 3932923 3933162 + 2 NA Intergenic L1MCa|LINE|L1 -132167 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 714-55 chr4 109383255 109383869 + 2 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat -50153 NM_001318086 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 613-24 chr11 75810219 75810652 + 2 NA Intergenic Intergenic 4362 NR_144531 100506113 Hs.720913 NR_144531 ENSG00000255507 UVRAG-DT - UVRAG divergent transcript ncRNA 363-345 chr4 141356305 141356537 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -23804 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 341-476 chr6 150287038 150287321 + 2 NA Intergenic Intergenic -81833 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 216-228 chr3 95580404 95580575 + 2 NA Intergenic Intergenic 102704 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 413-194 chr3 102754914 102755276 + 2 NA Intergenic U6|snRNA|snRNA 320080 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 281-295 chr3 138157717 138157956 + 2 NA Intergenic L1M5|LINE|L1 17085 NM_016216 51163 Hs.477700 NM_016216 ENSG00000138231 DBR1 - debranching RNA lariats 1 protein-coding 340-46 chr10 42985192 42985390 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -3784 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 165-12 chr11 22361167 22361287 + 2 NA intron (NM_020346, intron 5 of 11) L1M4|LINE|L1 22846 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 343-257 chr2 115070383 115070613 + 2 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 5925 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 199-245 chr8 122109153 122109343 + 2 NA Intergenic Intergenic 459396 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 402-372 chrX 146565952 146566270 + 2 NA Intergenic L1MA8|LINE|L1 -243660 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 246-204 chr2 134508432 134508601 + 2 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 210484 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 265-169 chr2 12958147 12958334 + 2 NA Intergenic Intergenic 48773 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 338-599 chr9 133501250 133501549 + 2 NA Intergenic Intergenic -22300 NM_001145099 11182 Hs.244378 NM_017585 ENSG00000160326 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 member 6 protein-coding 201-121 chr2 77198577 77198732 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 212689 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 207-223 chr4 91858035 91858196 + 2 NA Intergenic Intergenic 419187 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 224-156 chr2 140068669 140068852 + 2 NA Intergenic L1MC3|LINE|L1 517925 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 456-180 chr20 44982604 44983030 + 2 NA intron (NM_001352385, intron 4 of 11) L2a|LINE|L2 16305 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 391-119 chr15 68940938 68941307 + 2 NA intron (NM_001184780, intron 1 of 15) L1M5|LINE|L1 10597 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 475-298 chr9 99522530 99522851 + 2 NA Intergenic MIRb|SINE|MIR -147433 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 513-99 chr16 78187230 78187651 + 2 NA intron (NM_001291997, intron 4 of 7) AluSz|SINE|Alu 87786 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 318-162 chr13 80648227 80648460 + 2 NA Intergenic L1MA4A|LINE|L1 -307217 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 348-507 chr7 139175401 139175647 + 2 NA intron (NM_001321740, intron 13 of 17) L1MA3|LINE|L1 41746 NM_001318333 79989 Hs.133020 NM_024926 ENSG00000105948 TTC26 DYF13|IFT56|dyf-13 tetratricopeptide repeat domain 26 protein-coding 413-97 chr15 36454985 36455244 + 2 NA Intergenic Intergenic -124512 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 414-262 chr5 30699922 30700280 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -493585 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 228-60 chr11 97892385 97892577 + 2 NA Intergenic L2|LINE|L2 -1128468 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 231-145 chr19 6171134 6171302 + 2 NA intron (NM_030924, intron 7 of 14) L1PA15-16|LINE|L1 35551 NM_001289178 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 419-25 chr1 237594569 237594829 + 2 NA intron (NM_001035, intron 33 of 104) intron (NM_001035, intron 33 of 104) 123580 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 194-144 chr4 61540694 61540831 + 2 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 338590 NM_001371342 394-156 chr2 22113414 22113787 + 2 NA Intergenic L2|LINE|L2 -402948 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 219-165 chr2 47623627 47623808 + 2 NA Intergenic AluSz|SINE|Alu -53386 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 374-102 chr14 57486652 57486899 + 2 NA intron (NM_001283060, intron 2 of 5) intron (NM_001283060, intron 2 of 5) 7082 NM_001283059 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 490-143 chr2 66070612 66070933 + 2 NA Intergenic Intergenic 287556 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 324-163 chr14 71101586 71101810 + 2 NA intron (NM_014982, intron 30 of 35) intron (NM_014982, intron 30 of 35) 194239 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 415-226 chr5 159927006 159927303 + 2 NA intron (NM_000679, intron 1 of 1) intron (NM_000679, intron 1 of 1) 10672 NM_000679 147 Hs.368632 NM_000679 ENSG00000170214 ADRA1B ADRA1|ALPHA1BAR adrenoceptor alpha 1B protein-coding 291-260 chr20 32956958 32957245 + 2 NA intron (NM_001143967, intron 23 of 26) L1ME1|LINE|L1 47332 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 320-218 chr18 10219124 10219342 + 2 NA Intergenic L1ME1|LINE|L1 195137 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 368-128 chr13 78927306 78927633 + 2 NA Intergenic L1M2|LINE|L1 -87419 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 210-156 chr21 14587493 14587696 + 2 NA intron (NR_046512, intron 2 of 4) L2|LINE|L2 -4192 NM_001256370 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 183-140 chr7 11761245 11761397 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 70877 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 351-239 chr2 139773260 139773593 + 2 NA Intergenic Intergenic 813259 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 306-115 chr12 119357322 119357544 + 2 NA intron (NM_178499, intron 1 of 13) L1MA4A|LINE|L1 22704 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 203-25 chr10 66848063 66848224 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -77893 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 544-184 chr5 113472609 113473017 + 2 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 15640 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 444-33 chr11 7078694 7079025 + 2 NA Intergenic Intergenic -10139 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 254-205 chr2 186526458 186526669 + 2 NA Intergenic Intergenic 40303 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 614-28 chr13 74732336 74732703 + 2 NA Intergenic Intergenic 179676 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 362-351 chr5 96202918 96203136 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 123889 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 457-227 chr7 28384035 28384276 + 2 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) -28363 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 354-468 chr8 88723637 88723908 + 2 NA Intergenic L1MA9|LINE|L1 -396289 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 642-55 chr2 100506129 100506504 + 2 NA Intergenic L1M4b|LINE|L1 35834 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 255-451 chr9 1536141 1536302 + 2 NA Intergenic L1MB5|LINE|L1 -479126 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 299-430 chr7 120769990 120770222 + 2 NA Intergenic Intergenic 88038 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 431-166 chr21 33953692 33953983 + 2 NA intron (NR_134558, intron 2 of 2) L1M5|LINE|L1 -22545 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 341-67 chr10 78121681 78121911 + 2 NA Intergenic L1M4|LINE|L1 87933 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 370-342 chr4 59758287 59758615 + 2 NA Intergenic Intergenic 744878 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 307-71 chr10 100541200 100541468 + 2 NA intron (NM_017902, intron 3 of 7) AluJo|SINE|Alu 5391 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 268-179 chr2 17401295 17401457 + 2 NA Intergenic Intergenic 117064 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 213-20 chr1 194564849 194565055 + 2 NA Intergenic Intergenic 1260207 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 331-363 chr3 133874926 133875101 + 2 NA intron (NM_016577, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 20834 NM_001363953 51560 Hs.715344 NM_016577 ENSG00000154917 RAB6B - RAB6B, member RAS oncogene family protein-coding 489-253 chr8 70080837 70081215 + 2 NA Intergenic AluSz|SINE|Alu -9774 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 345-79 chr10 123207692 123207965 + 2 NA Intergenic L1M5|LINE|L1 53426 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 359-285 chr20 39360583 39360835 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -135961 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 306-42 chr1 204063662 204063874 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -9347 NM_005686 9580 Hs.201671 NM_005686 ENSG00000143842 SOX13 ICA12|Sox-13 SRY-box transcription factor 13 protein-coding 516-135 chr2 132814106 132814471 + 2 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -101269 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 241-405 chr8 126323533 126323756 + 2 NA Intergenic MER20|DNA|hAT-Charlie -1851 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 437-23 chr10 58160142 58160385 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE 107631 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 320-167 chr15 34681713 34681941 + 2 NA Intergenic Intergenic -26063 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 260-23 chr1 164740869 164741102 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 33656 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 288-129 chr15 26905372 26905565 + 2 NA intron (NM_001165037, intron 6 of 10) L1M4|LINE|L1 38342 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 350-418 chr5 144859437 144859626 + 2 NA Intergenic Intergenic 654140 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 302-19 chr1 172789486 172789692 + 2 NA Intergenic Intergenic 130486 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 433-31 chr10 92151703 92152081 + 2 NA intron (NM_001178137, intron 4 of 9) L2a|LINE|L2 91387 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 341-194 chr17 14461901 14462105 + 2 NA Intergenic AluSx3|SINE|Alu 158263 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 527-45 chr11 42674523 42674934 + 2 NA Intergenic Intergenic -421038 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 256-196 chr2 71726131 71726293 + 2 NA Intergenic Intergenic 259513 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 276-366 chr5 36010910 36011181 + 2 NA Intergenic Intergenic -10023 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 382-273 chr3 106664831 106665162 + 2 NA Intergenic L1M1|LINE|L1 575642 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 561-114 chr20 57055665 57056067 + 2 NA Intergenic Intergenic -157830 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 399-68 chr12 7504313 7504556 + 2 NA promoter-TSS (NM_004244) promoter-TSS (NM_004244) -616 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 331-54 chr10 67167904 67168110 + 2 NA intron (NM_001127384, intron 7 of 17) AluSx|SINE|Alu 155741 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 366-5 chr1 49806192 49806397 + 2 NA intron (NM_001323575, intron 2 of 12) MLT1A0-int|LTR|ERVL-MaLR 217660 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 219-338 chr7 55928168 55928355 + 2 NA intron (NM_182633, intron 6 of 6) intron (NM_182633, intron 6 of 6) -23616 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 203-227 chr8 55057210 55057382 + 2 NA Intergenic L1ME2|LINE|L1 -44732 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 620-85 chr3 26175488 26175866 + 2 NA Intergenic L1PB1|LINE|L1 -301982 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 353-345 chr3 164453027 164453279 + 2 NA Intergenic Intergenic -281597 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 276-46 chr10 22940760 22940955 + 2 NA intron (NM_001282747, intron 2 of 15) L1ME2|LINE|L1 12804 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 233-397 chr9 32181443 32181626 + 2 NA Intergenic Intergenic -203069 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 310-426 chr5 126208058 126208231 + 2 NA Intergenic L1PB1|LINE|L1 28567 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 203-173 chr4 179154289 179154487 + 2 NA Intergenic Intergenic -1246452 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 133-20 chr13 53962255 53962343 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 146880 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 296-54 chr10 73330690 73330900 + 2 NA intron (NM_001367801, intron 9 of 27) intron (NM_001367801, intron 9 of 27) 27959 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 568-21 chr10 120952349 120952742 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 101183 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 198-101 chr18 46855382 46855509 + 2 NA intron (NR_148699, intron 3 of 11) intron (NR_148699, intron 3 of 11) 62062 NR_136685 9063 Hs.57769 NM_004671 ENSG00000078043 PIAS2 ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4 protein inhibitor of activated STAT 2 protein-coding 195-75 chr16 47833236 47833408 + 2 NA Intergenic L1MD|LINE|L1 -25259 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 274-81 chr11 87553036 87553207 + 2 NA Intergenic Intergenic 166290 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 526-14 chr1 246066406 246066744 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 350837 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 365-78 chr11 104355305 104355623 + 2 NA Intergenic L1M4b|LINE|L1 -191317 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 321-601 chr9 97028824 97029064 + 2 NA TTS (NM_001333) TTS (NM_001333) 10198 NM_001333 1515 Hs.610096 NM_001333 ENSG00000136943 CTSV CATL2|CTSL2|CTSU cathepsin V protein-coding 498-87 chr14 71745537 71746003 + 2 NA Intergenic L3|LINE|CR1 159472 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 311-6 chr1 51941119 51941416 + 2 NA intron (NM_002867, intron 2 of 4) intron (NM_002867, intron 2 of 4) 49433 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 487-149 chr2 123390181 123390578 + 2 NA Intergenic Intergenic -316898 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 333-500 chr6 49182929 49183177 + 2 NA Intergenic L1M8|LINE|L1 280200 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 471-128 chr2 42098864 42099206 + 2 NA Intergenic Intergenic 51014 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 184-171 chr8 91839960 91840101 + 2 NA Intergenic Intergenic 177650 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 343-171 chr15 100446607 100446910 + 2 NA intron (NM_001290341, intron 13 of 13) MER4D1|LTR|ERV1 73819 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 692-68 chr3 161023822 161024328 + 2 NA intron (NM_001317912, intron 3 of 4) AluSz|SINE|Alu 80657 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 260-162 chr16 62142922 62143142 + 2 NA Intergenic Intergenic -106594 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 312-22 chr1 159243750 159243954 + 2 NA Intergenic L1MA7|LINE|L1 38977 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 585-81 chr2 187026248 187026629 + 2 NA Intergenic L1MA4A|LINE|L1 -177268 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 333-288 chr2 226893279 226893526 + 2 NA intron (NM_001349069, intron 5 of 8) intron (NM_001349069, intron 5 of 8) 57348 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 272-186 chr2 57079446 57079656 + 2 NA Intergenic Intergenic -828100 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 408-139 chr17 53818339 53818651 + 2 NA Intergenic Intergenic -4432 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 321-527 chr7 52965390 52965593 + 2 NA Intergenic MER39|LTR|ERV1 -70142 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 337-224 chr18 55113520 55113783 + 2 NA intron (NR_110743, intron 2 of 2) intron (NR_110743, intron 2 of 2) 10655 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 175-157 chr7 145778858 145778992 + 2 NA Intergenic Intergenic -942872 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 378-69 chr10 120072386 120072622 + 2 NA Intergenic Intergenic 113991 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 238-161 chr2 19352410 19352579 + 2 NA intron (NM_145260, intron 2 of 2) intron (NM_145260, intron 2 of 2) 4065 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 746-19 chr12 79476093 79476611 + 2 NA Intergenic SATR2|Satellite|Satellite 57095 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 336-61 chr10 25609210 25609518 + 2 NA Intergenic L1MA3|LINE|L1 -42348 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 380-381 chr8 36281456 36281714 + 2 NA Intergenic L1ME2|LINE|L1 -502789 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 371-136 chr16 72699756 72700121 + 2 NA Intergenic Intergenic -34968 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 282-440 chr8 54792844 54793063 + 2 NA Intergenic L1M3b|LINE|L1 176857 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 388-120 chr16 17787989 17788323 + 2 NA Intergenic Intergenic -317196 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 258-100 chr12 129741333 129741539 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 162589 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 143-25 chr14 35121493 35121598 + 2 NA intron (NM_017917, intron 1 of 12) L2|LINE|L2 997 NM_001305155 55012 Hs.530712 NM_017917 ENSG00000092020 PPP2R3C C14orf10|G4-1|G5pr|GDRM|SPGF36 protein phosphatase 2 regulatory subunit B''gamma protein-coding 290-69 chr11 17914585 17914770 + 2 NA intron (NR_104041, intron 8 of 9) intron (NR_104041, intron 8 of 9) 98370 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 333-562 chr8 58334085 58334386 + 2 NA Intergenic L1PA10|LINE|L1 -62134 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 505-301 chr8 52128493 52128833 + 2 NA intron (NM_014682, intron 22 of 25) intron (NM_014682, intron 22 of 25) -65699 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 327-147 chr14 48452372 48452619 + 2 NA Intergenic Intergenic -657481 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 244-389 chr9 96192786 96192947 + 2 NA Intergenic Intergenic -53597 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 330-123 chr12 41463819 41464113 + 2 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 26227 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 336-505 chr7 7155008 7155225 + 2 NA Intergenic Intergenic -27499 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 352-421 chr5 82839318 82839662 + 2 NA promoter-TSS (NR_039773) promoter-TSS (NR_039773) -665 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 252-236 chr21 23348669 23348915 + 2 NA Intergenic Intergenic 36043 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 505-17 chr1 175419031 175419447 + 2 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -226252 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 351-194 chr19 24355677 24355933 + 2 NA Intergenic ALR/Alpha|Satellite|centr -192358 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 515-160 chr3 51184917 51185362 + 2 NA intron (NM_004947, intron 12 of 52) L1MC3|LINE|L1 -200152 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 156-94 chr6 104037896 104038047 + 2 NA Intergenic Intergenic 821575 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 359-526 chrX 88389640 88389979 + 2 NA Intergenic L1PA17|LINE|L1 -357416 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 287-229 chr21 18184093 18184357 + 2 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -60608 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 234-64 chr11 97245628 97245803 + 2 NA Intergenic L1PB4|LINE|L1 737290 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 429-12 chr1 111288674 111289062 + 2 NA Intergenic Intergenic -1983 NM_021797 27159 Hs.128814 NM_021797 ENSG00000134216 CHIA AMCASE|CHIT2|TSA1902 chitinase acidic protein-coding 244-45 chr11 21359732 21359961 + 2 NA intron (NM_201551, intron 14 of 18) L1PB2|LINE|L1 690260 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 408-298 chr6 102624038 102624420 + 2 NA Intergenic L1MA3|LINE|L1 1225244 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 306-411 chr5 145856793 145856983 + 2 NA Intergenic L2a|LINE|L2 16080 NM_001080516 643226 Hs.570895 NM_001080516 ENSG00000204928 GRXCR2 DFNB101 glutaredoxin and cysteine rich domain containing 2 protein-coding 236-60 chr11 8379158 8379366 + 2 NA Intergenic L1PB3|LINE|L1 -110475 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 289-132 chr14 30782601 30782848 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -91811 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 482-31 chr10 11065522 11065947 + 2 NA intron (NM_001326345, intron 1 of 13) L2a|LINE|L2 39754 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 342-44 chr1 209962008 209962256 + 2 NA intron (NM_001256006, intron 3 of 8) intron (NM_001256006, intron 3 of 8) 23915 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 419-9 chr1 58046190 58046559 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 185793 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 229-4 chr1 48324924 48325098 + 2 NA intron (NM_001286238, intron 11 of 12) intron (NM_001286238, intron 11 of 12) 102295 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 210-114 chr19 52083442 52083589 + 2 NA intron (NM_001369827, intron 4 of 6) intron (NM_001369827, intron 4 of 6) 10756 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 165-24 chr12 74240966 74241084 + 2 NA intron (NR_038300, intron 3 of 6) intron (NR_038300, intron 3 of 6) 51606 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 561-151 chr4 101580441 101580790 + 2 NA Intergenic L1M2|LINE|L1 -209992 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 227-260 chr4 93584084 93584235 + 2 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -244594 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 305-121 chr12 47477249 47477493 + 2 NA Intergenic L1PA15-16|LINE|L1 62363 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 543-122 chr2 51059825 51060197 + 2 NA intron (NR_135237, intron 2 of 10) L1MB5|LINE|L1 27410 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 372-127 chr13 66424713 66424911 + 2 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 206562 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 324-90 chr11 55813577 55813762 + 2 NA Intergenic L1MC5a|LINE|L1 2302 NM_001004738 219437 Hs.553623 NM_001004738 ENSG00000279395 OR5L1 OR11-151|OST262 olfactory receptor family 5 subfamily L member 1 (gene/pseudogene) protein-coding 693-65 chr21 30274640 30275188 + 2 NA Intergenic Intergenic 8036 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 248-439 chrX 46504050 46504232 + 2 NA intron (NM_001190417, intron 5 of 5) L1ME3Cz|LINE|L1 41280 NM_001039891 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 233-208 chr20 52214126 52214351 + 2 NA Intergenic LTR37A|LTR|ERV1 -22253 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 476-140 chr2 69607646 69607911 + 2 NA intron (NM_014911, intron 2 of 21) Tigger13a|DNA|TcMar-Tigger 35961 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 753-51 chr5 119740993 119741643 + 2 NA Intergenic AluSq2|SINE|Alu 111759 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 748-60 chr3 49984221 49984799 + 2 NA intron (NM_001349190, intron 4 of 18) AluSz6|SINE|Alu 44360 NM_001349190 10180 Hs.696735 NM_005777 ENSG00000004534 RBM6 3G2|DEF-3|DEF3|HLC-11|NY-LU-12|g16 RNA binding motif protein 6 protein-coding 610-88 chr2 138832779 138833254 + 2 NA Intergenic Intergenic -52626 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 687-47 chr16 78397790 78398312 + 2 NA intron (NM_001291997, intron 5 of 7) intron (NM_001291997, intron 5 of 7) 298397 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 168-76 chr3 27234735 27234863 + 2 NA intron (NM_199347, intron 24 of 24) L1PA12|LINE|L1 -18276 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 430-320 chr8 127547151 127547549 + 2 NA Intergenic Intergenic -65211 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 515-158 chr3 34046104 34046471 + 2 NA Intergenic MIRb|SINE|MIR 247657 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 502-190 chr4 11131649 11132068 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -236969 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 455-93 chr17 54893319 54893618 + 2 NA Intergenic Intergenic -7223 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 259-18 chr1 167975845 167976083 + 2 NA intron (NM_001017977, intron 4 of 18) L1MC4a|LINE|L1 -22696 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 541-179 chr5 15035383 15035754 + 2 NA Intergenic Intergenic -163790 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 217-231 chr3 102928847 102929021 + 2 NA Intergenic L1M5|LINE|L1 493919 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 499-171 chr3 84707876 84708211 + 2 NA intron (NR_033860, intron 11 of 20) L1PB1|LINE|L1 161532 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 562-19 chr10 24143922 24144424 + 2 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -64618 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 323-520 chr7 140268275 140268518 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 91135 NR_024451 100134229 Hs.634333 NR_024451 ENSG00000260231 KDM7A-DT JHDM1D-AS1 KDM7A divergent transcript ncRNA 348-43 chr10 3352518 3352818 + 2 NA intron (NR_131187, intron 1 of 1) ORSL|DNA|hAT-Tip100 33973 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 352-203 chr19 12520942 12521242 + 2 NA Intergenic L1M2|LINE|L1 30390 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 236-167 chr2 65885745 65885929 + 2 NA Intergenic L2b|LINE|L2 -453238 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 271-273 chr3 94543861 94544083 + 2 NA Intergenic L3|LINE|CR1 -394291 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 313-35 chr1 236384731 236384935 + 2 NA Intergenic Intergenic -9453 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 303-497 chr9 93585659 93585870 + 2 NA intron (NM_005392, intron 1 of 21) intron (NM_005392, intron 1 of 21) -9077 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 793-47 chr7 69499180 69499768 + 2 NA Intergenic Intergenic 98150 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 423-133 chr2 77663655 77663888 + 2 NA Intergenic Intergenic -141338 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 310-119 chr13 104033931 104034193 + 2 NA Intergenic Intergenic 608862 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 534-78 chr14 106861728 106862166 + 2 NA Intergenic L1ME2|LINE|L1 -10948 NR_049827 100847062 NR_049827 ENSG00000265929 MIR5195 - microRNA 5195 ncRNA 204-60 chr12 82845393 82845591 + 2 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 158337 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 365-183 chr2 39972081 39972296 + 2 NA intron (NR_038441, intron 2 of 4) L1PA4|LINE|L1 54554 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 534-218 chr6 64483737 64484196 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 677130 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 324-105 chr11 119961890 119962172 + 2 NA Intergenic L3b|LINE|CR1 166822 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 351-502 chr8 134895085 134895336 + 2 NA Intergenic LTR41|LTR|ERVL 45275 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 338-278 chr2 153376764 153376987 + 2 NA Intergenic L2c|LINE|L2 101887 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 281-13 chr1 119362589 119362747 + 2 NA Intergenic L1ME2|LINE|L1 -6117 NM_016527 51179 Hs.659767 NM_016527 ENSG00000116882 HAO2 GIG16|HAOX2 hydroxyacid oxidase 2 protein-coding 368-407 chr6 139718994 139719330 + 2 NA Intergenic L1ME3|LINE|L1 -51911 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 591-166 chr8 119586048 119586448 + 2 NA non-coding (NR_045555, exon 4 of 14) non-coding (NR_045555, exon 4 of 14) 6760 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 375-72 chr11 42088455 42088728 + 2 NA Intergenic Intergenic -3133 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 404-258 chr5 94639449 94639774 + 2 NA intron (NM_032290, intron 4 of 20) Tigger2|DNA|TcMar-Tigger 20942 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 299-403 chr6 140466183 140466394 + 2 NA Intergenic L1M4b|LINE|L1 -217526 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 332-469 chr7 4922580 4922890 + 2 NA intron (NR_072989, intron 2 of 8) FRAM|SINE|Alu 36452 NM_001100600 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 373-47 chr10 36499203 36499418 + 2 NA Intergenic Intergenic -626547 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 554-184 chr6 125988312 125988830 + 2 NA intron (NM_001350583, intron 1 of 12) intron (NM_001350583, intron 1 of 12) 2031 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 381-327 chr6 39662504 39662781 + 2 NA intron (NM_001289020, intron 3 of 21) FLAM_A|SINE|Alu 62766 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 341-535 chr8 121881246 121881416 + 2 NA Intergenic Intergenic -239891 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 398-36 chr10 54655653 54656001 + 2 NA non-coding (NR_134503, exon 6 of 6) non-coding (NR_134503, exon 6 of 6) -47870 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 277-152 chr17 64017537 64017762 + 2 NA intron (NM_001099788, intron 1 of 5) L1M5|LINE|L1 2984 NM_001099789 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 392-169 chr2 231860385 231860647 + 2 NA Intergenic Intergenic 31782 NR_031717 100302126 NR_031717 ENSG00000222246 MIR1471 MIRN1471|hsa-mir-1471 microRNA 1471 ncRNA 331-387 chr4 96045225 96045505 + 2 NA Intergenic Intergenic 205272 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 288-170 chr19 42585545 42585808 + 2 NA intron (NM_001816, intron 4 of 5) L1MB4|LINE|L1 9248 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 355-175 chr15 100220707 100220999 + 2 NA intron (NM_139057, intron 7 of 21) L1MB7|LINE|L1 121122 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 583-5 chr1 98503066 98503570 + 2 NA Intergenic Intergenic -158403 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 343-10 chr1 66003027 66003267 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 10531 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 276-181 chr16 62726757 62727011 + 2 NA Intergenic Intergenic -690446 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 497-24 chr10 75519138 75519491 + 2 NA intron (NM_001305581, intron 2 of 6) L1PA6|LINE|L1 -33144 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 380-382 chr8 37101974 37102194 + 2 NA Intergenic Intergenic 317710 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 260-464 chrX 31733741 31733928 + 2 NA intron (NM_000109, intron 51 of 78) intron (NM_000109, intron 51 of 78) -225536 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 253-291 chr4 36619810 36620044 + 2 NA intron (NR_149124, intron 1 of 4) L1MB1|LINE|L1 21973 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 276-155 chr14 82447418 82447568 + 2 NA Intergenic Intergenic -195139 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 290-41 chr10 22291497 22291664 + 2 NA Intergenic L1MB5|LINE|L1 -24803 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 BMI1|PCGF4|RNF51 COMMD3-BMI1 readthrough protein-coding 402-181 chr2 225559850 225560162 + 2 NA intron (NM_001371273, intron 4 of 7) intron (NM_001371273, intron 4 of 7) 159120 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 259-169 chr18 56939357 56939614 + 2 NA intron (NM_015285, intron 25 of 27) intron (NM_015285, intron 25 of 27) 132634 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 223-33 chr10 35767816 35767979 + 2 NA Intergenic Intergenic -10405 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 505-133 chr2 24538312 24538693 + 2 NA intron (NM_001362952, intron 1 of 23) MIR3|SINE|MIR -45975 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 331-206 chr17 67789777 67789979 + 2 NA Intergenic AluJb|SINE|Alu -35625 NM_004459 2186 Hs.444200 NM_004459 ENSG00000171634 BPTF FAC1|FALZ|NEDDFL|NURF301 bromodomain PHD finger transcription factor protein-coding 697-81 chr9 104230095 104230589 + 2 NA Intergenic Intergenic -39887 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 267-234 chr20 59215936 59216103 + 2 NA intron (NM_178457, intron 3 of 4) MER113|DNA|hAT-Charlie 24999 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 291-485 chr9 698812 699008 + 2 NA intron (NM_001354337, intron 1 of 10) L2c|LINE|L2 5571 NM_001354340 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 477-146 chr2 34407301 34407642 + 2 NA Intergenic Intergenic -270086 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 473-203 chr4 178752066 178752537 + 2 NA Intergenic Intergenic -844365 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 376-328 chr5 95018033 95018269 + 2 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) 63715 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 461-242 chr7 4345275 4345538 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -210569 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 661-10 chr11 19069280 19069873 + 2 NA Intergenic L1MA5|LINE|L1 -8859 NM_054030 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 366-147 chr16 6242209 6242428 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 222615 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 499-165 chr3 60465606 60465860 + 2 NA intron (NM_001320900, intron 6 of 9) L1MA3|LINE|L1 152137 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 343-172 chr16 2854218 2854481 + 2 NA intron (NM_022119, intron 4 of 5) L2b|LINE|L2 3821 NM_022119 64063 Hs.459709 NM_022119 ENSG00000005001 PRSS22 BSSP-4|SP001LA|hBSSP-4 serine protease 22 protein-coding 368-214 chr19 23646301 23646568 + 2 NA Intergenic L1MA8|LINE|L1 40778 NM_138330 171392 Hs.264345 NM_138330 ENSG00000197372 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 826-21 chr15 50565558 50566114 + 2 NA intron (NR_149154, intron 37 of 37) AluSx1|SINE|Alu -19170 NM_203494 373509 Hs.677758 NM_203494 ENSG00000170236 USP50 - ubiquitin specific peptidase 50 protein-coding 353-444 chr6 48839134 48839344 + 2 NA Intergenic MER34C_|LTR|ERV1 624014 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 295-332 chr4 54950116 54950359 + 2 NA Intergenic MIR|SINE|MIR 175358 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 240-165 chr16 9711845 9712024 + 2 NA Intergenic MIRb|SINE|MIR -256429 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 168-113 chr8 92933345 92933445 + 2 NA intron (NM_001171798, intron 1 of 4) intron (NM_001171798, intron 1 of 4) 32194 NM_001191036 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 328-153 chr14 62755577 62755788 + 2 NA intron (NM_172375, intron 9 of 9) L1MA2|LINE|L1 289776 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 468-303 chr7 92645561 92645907 + 2 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -55344 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 354-304 chr3 105913194 105913503 + 2 NA Intergenic Intergenic -43947 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 357-311 chr4 66487217 66487516 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner 210542 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 373-162 chr18 5935925 5936213 + 2 NA Intergenic Intergenic -40115 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 317-464 chr7 115519517 115519767 + 2 NA Intergenic Intergenic 61799 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 320-473 chr5 178579093 178579283 + 2 NA intron (NM_173465, intron 1 of 28) intron (NM_173465, intron 1 of 28) 11205 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 390-72 chr12 38574416 38574706 + 2 NA Intergenic L1MA1|LINE|L1 257787 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 328-217 chr18 1146295 1146508 + 2 NA Intergenic Intergenic 213228 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 362-6 chr1 41961403 41961749 + 2 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) -42654 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 231-76 chr12 133152806 133152967 + 2 NA intron (NM_015394, intron 4 of 4) intron (NM_015394, intron 4 of 4) 22259 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 374-206 chr2 154787926 154788194 + 2 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 89365 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 378-58 chr10 55457871 55458162 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -141026 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 500-327 chrX 57349088 57349436 + 2 NA intron (NR_148564, intron 5 of 11) (AT)n|Simple_repeat|Simple_repeat 62408 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 391-382 chr9 133685945 133686296 + 2 NA intron (NM_001134707, intron 16 of 20) intron (NM_001134707, intron 16 of 20) -28712 NR_102735 138948 Hs.223858 NR_002783 ENSG00000225756 DBH-AS1 NCRNA00118 DBH antisense RNA 1 ncRNA 234-159 chr2 23004621 23004803 + 2 NA Intergenic Intergenic -380467 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 286-52 chr10 111476343 111476518 + 2 NA Intergenic PABL_A|LTR|ERV1 362139 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 281-323 chr4 90800823 90801002 + 2 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 565881 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 238-211 chr20 55112706 55112893 + 2 NA Intergenic Intergenic -310244 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 602-20 chr11 40775788 40776184 + 2 NA intron (NM_020929, intron 1 of 4) L1PA15-16|LINE|L1 -482856 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 335-548 chr8 128417637 128417889 + 2 NA intron (NR_121672, intron 5 of 7) intron (NR_121672, intron 5 of 7) 146916 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 339-532 chr7 57157390 57157610 + 2 NA Intergenic L1MA7|LINE|L1 -17636 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 370-466 chr8 142974006 142974224 + 2 NA Intergenic Intergenic -21713 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 518-105 chr17 31663777 31664174 + 2 NA Intergenic L1MEf|LINE|L1 88564 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 363-286 chr3 71993248 71993485 + 2 NA Intergenic Intergenic 107089 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 499-283 chr9 75478328 75478665 + 2 NA Intergenic Intergenic 389982 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 349-305 chr21 28077552 28077879 + 2 NA intron (NR_126010, intron 1 of 4) intron (NR_126010, intron 1 of 4) -12688 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 369-278 chr4 2199516 2199849 + 2 NA intron (NM_181808, intron 5 of 25) AluSx|SINE|Alu 42439 NM_181808 353497 Hs.368454 NM_181808 ENSG00000130997 POLN POL4P DNA polymerase nu protein-coding 190-88 chr2 71100678 71100836 + 2 NA Intergenic Intergenic 29472 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 661-77 chr5 27951185 27951661 + 2 NA Intergenic Intergenic 336242 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 165-36 chr15 36024131 36024268 + 2 NA Intergenic Intergenic 97343 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 231-317 chr6 157957674 157957883 + 2 NA Intergenic L1MEc|LINE|L1 -24085 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 308-266 chr20 26323248 26323409 + 2 NA Intergenic ALR/Alpha|Satellite|centr -114095 NR_040095 284801 Hs.370699 NR_040095 ENSG00000227195 MIR663AHG - MIR663A host gene ncRNA 279-22 chr1 190562251 190562515 + 2 NA Intergenic Intergenic -62507 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 469-291 chr8 133101875 133102204 + 2 NA intron (NM_003235, intron 43 of 47) MIR|SINE|MIR 563 NM_001045557 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 340-123 chr12 131702414 131702660 + 2 NA Intergenic L1M2a|LINE|L1 -8553 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 263-228 chr20 15668939 15669112 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 254289 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 322-454 chr6 50217311 50217486 + 2 NA Intergenic Intergenic -167469 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 837-5 chr11 4893918 4894536 + 2 NA Intergenic MIRb|SINE|MIR 12527 NM_001004759 401665 NM_001004759 ENSG00000176900 OR51T1 OR11-26 olfactory receptor family 51 subfamily T member 1 protein-coding 227-145 chr18 59895140 59895305 + 2 NA Intergenic L2|LINE|L2 -4774 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 740 chr1 30150584 30151156 + 2 NA Intergenic Intergenic -113258 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 220-370 chr8 91543286 91543450 + 2 NA Intergenic Intergenic 294049 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 277-446 chr9 79149095 79149257 + 2 NA Intergenic Intergenic -3510 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 647-87 chr6 125854426 125854983 + 2 NA intron (NM_001199621, intron 2 of 14) intron (NM_001199621, intron 2 of 14) -35846 NR_126386 104355145 Hs.590370 NR_126386 ENSG00000232131 NCOA7-AS1 - NCOA7 antisense RNA 1 ncRNA 674-57 chr22 42026039 42026665 + 2 NA intron (NM_152613, intron 5 of 5) L1ME4a|LINE|L1 27564 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 563-110 chr21 21560358 21560834 + 2 NA Intergenic AluSz|SINE|Alu 176723 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 198-148 chr21 33944950 33945102 + 2 NA intron (NR_038883, intron 1 of 2) L1MC1|LINE|L1 13812 NR_134558 100506334 Hs.532855 NM_207472 ENSG00000237945 LINC00649 - long intergenic non-protein coding RNA 649 ncRNA 648-138 chr7 81313683 81314323 + 2 NA Intergenic Intergenic 247816 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 363-443 chr8 78184011 78184339 + 2 NA Intergenic HERVL-int|LTR|ERVL -332165 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 541-162 chr3 128856004 128856482 + 2 NA Intergenic HERV3-int|LTR|ERV1 9435 NR_162138 113219457 NR_162138 MIR12124 - microRNA 12124 ncRNA 449-268 chr8 40471710 40472007 + 2 NA Intergenic Intergenic -128495 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 367-227 chr2 171626633 171626965 + 2 NA Intergenic MER52A|LTR|ERV1 -60670 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 501-105 chr2 67891656 67892132 + 2 NA Intergenic Intergenic -66332 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 292-37 chr10 31477176 31477366 + 2 NA intron (NM_001323678, intron 2 of 6) L1PB4|LINE|L1 -77516 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 221-45 chr10 107617215 107617408 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 451982 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 407-236 chr5 2436064 2436319 + 2 NA Intergenic Intergenic -123990 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 550-153 chr3 182022399 182022798 + 2 NA Intergenic Intergenic 70234 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 318-388 chr4 36370235 36370420 + 2 NA Intergenic Intergenic 56101 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 461-263 chr8 77890463 77890853 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 439961 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 360-305 chr3 88849825 88850094 + 2 NA Intergenic L1P4|LINE|L1 -257662 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 461-195 chr4 75023322 75023631 + 2 NA intron (NM_015393, intron 2 of 3) intron (NM_015393, intron 2 of 3) -53114 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 255-323 chr5 33079771 33079945 + 2 NA Intergenic Intergenic 132415 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 256-150 chr16 13483158 13483392 + 2 NA Intergenic Intergenic -436882 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 296-18 chr1 175255727 175255988 + 2 NA Intergenic HAL1|LINE|L1 -62870 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 306-296 chr3 11411086 11411240 + 2 NA intron (NM_001144912, intron 16 of 16) L1MB3|LINE|L1 138766 NM_001136031 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 350-70 chr11 37212885 37213103 + 2 NA Intergenic L1M1|LINE|L1 -614715 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 323-298 chr20 56239599 56239839 + 2 NA Intergenic L2|LINE|L2 -9013 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 275-297 chr5 130808330 130808568 + 2 NA Intergenic Intergenic 356807 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 223-168 chr2 160097062 160097251 + 2 NA Intergenic Intergenic -34541 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 339-529 chr7 49565598 49565800 + 2 NA Intergenic L1PA16|LINE|L1 -207939 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 374-395 chr8 117543296 117543626 + 2 NA Intergenic Intergenic 22748 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 363-362 chr5 63756171 63756360 + 2 NA Intergenic Intergenic 206027 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 400-330 chr7 133128730 133129070 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -20389 NR_133931 105375512 Hs.521205 NR_133931 LOC105375512 - uncharacterized LOC105375512 ncRNA 339-386 chr3 176433516 176433823 + 2 NA Intergenic Intergenic -81434 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 571-51 chr15 59508809 59509315 + 2 NA intron (NM_152450, intron 6 of 8) intron (NM_152450, intron 6 of 8) 70876 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 420-217 chr4 181366102 181366366 + 2 NA Intergenic Intergenic -101205 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 310-149 chr14 103361617 103361844 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -23634 NM_001128919 4140 Hs.35828 NM_002376 ENSG00000075413 MARK3 CTAK1|KP78|PAR1A|Par-1a|VIPB microtubule affinity regulating kinase 3 protein-coding 363-126 chr13 111557167 111557434 + 2 NA Intergenic Intergenic -38709 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 576-157 chr7 40026583 40027054 + 2 NA intron (NM_003718, intron 5 of 13) intron (NM_003718, intron 5 of 13) 76458 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 258-81 chr12 26157144 26157350 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -32210 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 216-352 chr9 99698963 99699149 + 2 NA intron (NR_109802, intron 3 of 6) Tigger1|DNA|TcMar-Tigger 120833 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 211-106 chr16 76795202 76795397 + 2 NA Intergenic Intergenic -73637 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 390-234 chr3 44569041 44569353 + 2 NA intron (NM_025169, intron 5 of 5) MLT1M|LTR|ERVL-MaLR 14004 NM_025169 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 270-344 chr6 164658539 164658760 + 2 NA Intergenic Intergenic 163414 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 353-95 chr11 104579309 104579622 + 2 NA intron (NR_120585, intron 1 of 3) intron (NR_120585, intron 1 of 3) 29837 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 236-223 chr3 76411786 76411959 + 2 NA Intergenic Intergenic -626323 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 250-191 chr2 33485822 33486022 + 2 NA intron (NM_001349975, intron 3 of 19) intron (NM_001349975, intron 3 of 19) 9273 NM_001349976 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 582-123 chr5 94369239 94369749 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) 249110 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 344-152 chr15 37831263 37831518 + 2 NA Intergenic L1ME3B|LINE|L1 -103217 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 287-28 chr1 181433388 181433579 + 2 NA Intergenic Intergenic -50034 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 446-164 chr20 16852547 16852976 + 2 NA Intergenic L1PB1|LINE|L1 104408 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 202-174 chr3 119432599 119432762 + 2 NA intron (NM_018266, intron 8 of 8) intron (NM_018266, intron 8 of 8) 30935 NR_073506 55254 Hs.594171 NM_018266 ENSG00000176142 TMEM39A - transmembrane protein 39A protein-coding 385-250 chr3 118417153 118417408 + 2 NA Intergenic L1MA3|LINE|L1 -224488 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 263-31 chr1 207905005 207905159 + 2 NA intron (NM_001025109, intron 1 of 7) MER58C|DNA|hAT-Charlie 6043 NM_001773 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 802-38 chr2 205323094 205323678 + 2 NA intron (NM_205863, intron 18 of 21) intron (NM_205863, intron 18 of 21) -359114 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 398-2 chr1 37052021 37052290 + 2 NA Intergenic Intergenic -17640 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 328-88 chr11 76846257 76846430 + 2 NA Intergenic MIRb|SINE|MIR -14575 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 460-172 chr20 20914354 20914647 + 2 NA Intergenic AluSz|SINE|Alu 191858 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 888-24 chr2 147812445 147812982 + 2 NA Intergenic Intergenic -31804 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 682-16 chr11 78271962 78272473 + 2 NA intron (NM_012296, intron 2 of 9) THE1B-int|LTR|ERVL-MaLR 69663 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 341-339 chr3 89344970 89345246 + 2 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 237487 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 317-209 chr19 36344944 36345224 + 2 NA intron (NM_001297619, intron 4 of 4) AluSp|SINE|Alu -13366 NR_038278 100506930 Hs.595153 NR_038278 ENSG00000232677 LINC00665 - long intergenic non-protein coding RNA 665 ncRNA 117-6 chr11 45174333 45174391 + 2 NA intron (NM_001256695, intron 1 of 7) Charlie19a|DNA|hAT-Charlie 27019 NM_001256695 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 344-389 chr5 89983250 89983493 + 2 NA Intergenic Intergenic 33349 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 328-547 chr7 120111851 120112041 + 2 NA Intergenic L1PB4|LINE|L1 -161229 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 457-84 chr16 49973811 49974226 + 2 NA Intergenic AluSg7|SINE|Alu -51188 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 155-38 chr14 43705711 43705824 + 2 NA Intergenic L2a|LINE|L2 801516 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 757-35 chr20 53048692 53049236 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 76606 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 236-369 chr8 131230470 131230649 + 2 NA Intergenic Intergenic -189650 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 237-260 chr4 31344961 31345094 + 2 NA Intergenic L1MB7|LINE|L1 -161517 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 376-233 chr22 44613421 44613769 + 2 NA intron (NR_044991, intron 3 of 4) L1ME3|LINE|L1 11824 NR_044991 414351 Hs.572878 NR_044991 LINC00229 C22orf10|NCRNA00229|dJ474I12.C22.2 long intergenic non-protein coding RNA 229 ncRNA 429-162 chr2 128711185 128711467 + 2 NA Intergenic L1M5|LINE|L1 -153274 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 215-150 chr2 81484641 81484799 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -17774 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 176-109 chr5 93453518 93453656 + 2 NA intron (NR_021491, intron 4 of 5) L1MEc|LINE|L1 117756 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 351-148 chr15 82800725 82800934 + 2 NA intron (NM_001281805, intron 1 of 12) LTR35B|LTR|ERV1 5240 NM_001281805 123722 Hs.719372 NM_001007122 ENSG00000186628 FSD2 SPRYD1 fibronectin type III and SPRY domain containing 2 protein-coding 381-41 chr10 30877650 30877907 + 2 NA intron (NM_001143766, intron 5 of 7) intron (NM_001143766, intron 5 of 7) 121739 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 300-416 chr7 9570399 9570601 + 2 NA Intergenic MIR|SINE|MIR -63770 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 350-177 chr17 58078929 58079223 + 2 NA non-coding (NR_110809, exon 3 of 3) non-coding (NR_110809, exon 3 of 3) 4128 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 171-66 chr20 49364876 49365014 + 2 NA 3' UTR (NM_004975, exon 2 of 2) 3' UTR (NM_004975, exon 2 of 2) 84262 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 346-88 chr12 9908384 9908566 + 2 NA intron (NM_207375, intron 4 of 4) HERVI-int|LTR|ERV1 23895 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 640-24 chr12 3718218 3718654 + 2 NA intron (NM_001144958, intron 2 of 19) intron (NM_001144958, intron 2 of 19) 34673 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 229-374 chr7 157065760 157065984 + 2 NA Intergenic Intergenic 55015 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 323-251 chr2 73774867 73775126 + 2 NA exon (NM_003584, exon 3 of 9) exon (NM_003584, exon 3 of 9) 5161 NM_003584 8446 Hs.14611 NM_003584 ENSG00000144048 DUSP11 PIR1 dual specificity phosphatase 11 protein-coding 356-318 chr3 40297515 40297859 + 2 NA intron (NR_033965, intron 2 of 2) intron (NR_033965, intron 2 of 2) 12011 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 570-199 chr8 113685564 113686079 + 2 NA Intergenic Intergenic -248882 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 219-247 chr3 188090956 188091119 + 2 NA Intergenic LTR105_Mam|LTR|ERVL -62861 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 687-21 chr10 131318014 131318607 + 2 NA Intergenic Intergenic -6589 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 542-11 chr1 174578793 174579190 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -121548 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 388-84 chr12 80237470 80237811 + 2 NA intron (NM_001368062, intron 14 of 62) L2a|LINE|L2 28187 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 307-501 chr9 1022566 1022733 + 2 NA Intergenic L1ME1|LINE|L1 -25494 NR_110643 102800446 Hs.171043 NR_110643 LINC01230 TCONS_00015639|linc-DMRT2|lnc-DRMT2 long intergenic non-protein coding RNA 1230 ncRNA 208-231 chr6 48863910 48864114 + 2 NA Intergenic Intergenic 599241 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 205-25 chr10 7018325 7018469 + 2 NA Intergenic Intergenic 168387 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 683-3 chr1 219256889 219257444 + 2 NA Intergenic L1ME3A|LINE|L1 82197 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 548-252 chr9 98927805 98928279 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -15865 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 350-376 chr4 182030576 182030764 + 2 NA Intergenic L1PA10|LINE|L1 113845 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 186-58 chr16 35503026 35503210 + 2 NA Intergenic Intergenic 4052 NR_034018 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 558-52 chr14 45827384 45827815 + 2 NA Intergenic SATR1|Satellite|Satellite -111997 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 276-229 chr2 79162050 79162270 + 2 NA Intergenic Intergenic -2407 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 424-134 chr2 105575590 105575925 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 34802 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 408-127 chr16 13536786 13537094 + 2 NA Intergenic Intergenic -383217 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 289-10 chr1 85498057 85498298 + 2 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) -33018 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 298-46 chr10 56475718 56475918 + 2 NA Intergenic L1MC5|LINE|L1 -114545 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 585-70 chr2 63049332 63049879 + 2 NA promoter-TSS (NM_001199770) promoter-TSS (NM_001199770) -452 NM_001199770 5013 Hs.734360 NM_014562 ENSG00000115507 OTX1 - orthodenticle homeobox 1 protein-coding 487-282 chr8 50530382 50530748 + 2 NA intron (NR_135797, intron 10 of 20) ORSL-2b|DNA|hAT-Tip100 366434 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 333-435 chr5 19861032 19861287 + 2 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 25113 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 157-143 chrX 103234372 103234488 + 2 NA Intergenic L1MC4|LINE|L1 19322 NM_001080425 56271 Hs.184736 NM_001080425 ENSG00000102409 BEX4 BEXL1 brain expressed X-linked 4 protein-coding 342-152 chr14 87480991 87481255 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 174171 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 458-271 chr9 29562732 29563109 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -349319 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 275-397 chrX 81017006 81017183 + 2 NA Intergenic L1P4b|LINE|L1 184819 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 320-45 chr10 3919603 3919896 + 2 NA Intergenic Intergenic -71411 NR_106726 102464829 NR_106726 ENSG00000274809 MIR6078 hsa-mir-6078 microRNA 6078 ncRNA 619-108 chr6 47514038 47514582 + 2 NA intron (NM_012120, intron 2 of 17) intron (NM_012120, intron 2 of 17) 36521 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 332-231 chr19 37511150 37511337 + 2 NA intron (NM_001013659, intron 2 of 7) intron (NM_001013659, intron 2 of 7) -4156 NR_110723 101927720 Hs.18070 NR_110723 ENSG00000266916 ZNF793-AS1 - ZNF793 antisense RNA 1 (head to head) ncRNA 315-218 chr2 2418620 2418850 + 2 NA Intergenic L1M1|LINE|L1 -87460 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 515-211 chr5 81865405 81865851 + 2 NA Intergenic Intergenic -106395 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 602-18 chr11 32120465 32120939 + 2 NA Intergenic Intergenic 23210 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 477-227 chr4 114989286 114989602 + 2 NA intron (NM_022569, intron 2 of 13) L2a|LINE|L2 124176 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 322-390 chr4 121055959 121056195 + 2 NA intron (NM_024574, intron 1 of 3) intron (NM_024574, intron 1 of 3) 16458 NM_024574 79625 Hs.709520 NM_024574 ENSG00000173376 NDNF C4orf31|NORD neuron derived neurotrophic factor protein-coding 127-83 chr9 104175154 104175224 + 2 NA Intergenic Intergenic 80562 NM_001042550 10592 Hs.119023 NM_006444 ENSG00000136824 SMC2 CAP-E|CAPE|SMC-2|SMC2L1 structural maintenance of chromosomes 2 protein-coding 492-280 chr9 30833132 30833504 + 2 NA Intergenic Intergenic -424864 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 308-121 chr12 128172688 128172971 + 2 NA Intergenic MLT2A2|LTR|ERVL 54612 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 544-111 chr2 49386449 49386855 + 2 NA Intergenic L1MA6|LINE|L1 -232125 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 304-125 chr12 124813341 124813586 + 2 NA intron (NR_160424, intron 4 of 11) MLT1J|LTR|ERVL-MaLR 26208 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 242-419 chr8 139447978 139448175 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 255047 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 316-115 chr11 109550284 109550468 + 2 NA Intergenic Intergenic 128186 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 305-373 chr4 31750199 31750459 + 2 NA Intergenic Intergenic 243785 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 361-44 chr10 52915210 52915465 + 2 NA Intergenic Intergenic -143637 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 430-292 chr7 71523960 71524329 + 2 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -216374 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 228-296 chr6 101164774 101164923 + 2 NA Intergenic Intergenic -234137 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 372-55 chr10 83812205 83812436 + 2 NA Intergenic Intergenic -135231 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 658-51 chr16 60769132 60769615 + 2 NA Intergenic MIR3|SINE|MIR 286393 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 319-352 chr3 184790257 184790523 + 2 NA Intergenic Intergenic -17235 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LINC02069 - long intergenic non-protein coding RNA 2069 ncRNA 220-43 chr10 42383256 42383387 + 2 NA Intergenic MER57A-int|LTR|ERV1 -15276 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 486-196 chr3 7891491 7891822 + 2 NA Intergenic Intergenic 124651 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 455-18 chr1 218634192 218634492 + 2 NA intron (NR_031644, intron 3 of 6) MER61D|LTR|ERV1 124247 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 172-52 chr19 35586352 35586479 + 2 NA Intergenic Intergenic -11480 NR_110750 102723617 Hs.579904 NR_110750 ENSG00000224910 LINC01766 - long intergenic non-protein coding RNA 1766 ncRNA 151-39 chr2 139974319 139974401 + 2 NA Intergenic L1MA4A|LINE|L1 612325 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 399-70 chr12 61192256 61192599 + 2 NA Intergenic Intergenic 1000412 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 415-119 chr2 30808163 30808462 + 2 NA promoter-TSS (NM_144575) promoter-TSS (NM_144575) -866 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 336-349 chr22 25623738 25624044 + 2 NA intron (NM_001362778, intron 2 of 19) L2|LINE|L2 59216 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 498-2 chr1 25525171 25525625 + 2 NA Intergenic L2c|LINE|L2 -18187 NM_015627 26119 Hs.590911 NM_015627 ENSG00000157978 LDLRAP1 ARH|ARH1|ARH2|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 604-100 chr21 45586718 45587205 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -6693 NR_146912 105372840 Hs.406003 NR_146912 ENSG00000233922 LINC01694 - long intergenic non-protein coding RNA 1694 ncRNA 214-97 chr14 50942794 50942953 + 2 NA intron (NM_002863, intron 1 of 19) intron (NM_002863, intron 1 of 19) 1610 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 354-23 chr1 170706140 170706360 + 2 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 42119 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 248-130 chr15 70722633 70722820 + 2 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) -20444 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 344-534 chrX 99151607 99151889 + 2 NA Intergenic L1M2|LINE|L1 1258525 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 389-259 chr4 46244284 46244550 + 2 NA 3' UTR (NM_001330690, exon 11 of 11) 3' UTR (NM_001330690, exon 11 of 11) -120363 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 335-138 chr13 38466298 38466538 + 2 NA Intergenic L1MDa|LINE|L1 -101306 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 431-313 chr9 15831837 15832136 + 2 NA intron (NM_001355547, intron 20 of 24) intron (NM_001355547, intron 20 of 24) 268008 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 231-365 chr8 132361965 132362124 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 85218 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 250-14 chr1 98353541 98353681 + 2 NA Intergenic Intergenic 142900 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 271-466 chr8 136222448 136222700 + 2 NA Intergenic L1MCc|LINE|L1 -308224 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 231-377 chr9 31109715 31109885 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 271690 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 306-198 chr17 62127024 62127254 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -61861 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 512-21 chr1 220913054 220913415 + 2 NA Intergenic UCON40|Unknown|Unknown -33094 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 551-199 chr7 119852848 119853249 + 2 NA intron (NR_131960, intron 1 of 4) intron (NR_131960, intron 1 of 4) 54327 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 465-10 chr1 103806355 103806715 + 2 NA Intergenic L1MD1|LINE|L1 56694 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 650-74 chr21 39960671 39961076 + 2 NA Intergenic L1MEg2|LINE|L1 93435 NM_006198 5121 Hs.80296 NM_006198 ENSG00000183036 PCP4 PEP-19 Purkinje cell protein 4 protein-coding 219-387 chrX 93610993 93611151 + 2 NA Intergenic L1MCa|LINE|L1 62506 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 364-225 chr2 130978118 130978304 + 2 NA intron (NM_001367493, intron 4 of 13) LOR1-int|LTR|ERV1 114951 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 330-34 chr1 185238838 185239102 + 2 NA intron (NM_017673, intron 16 of 18) intron (NM_017673, intron 16 of 18) 78273 NM_006469 10625 Hs.497183 NM_006469 ENSG00000116679 IVNS1ABP ARA3|FLARA3|HSPC068|KLHL39|ND1|NS-1|NS1-BP|NS1BP influenza virus NS1A binding protein protein-coding 313-200 chr17 39587141 39587336 + 2 NA Intergenic Intergenic 20682 NM_006160 4761 Hs.322431 NM_006160 ENSG00000171532 NEUROD2 EIEE72|NDRF|bHLHa1 neuronal differentiation 2 protein-coding 485-235 chr5 128771024 128771345 + 2 NA Intergenic Intergenic -193943 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 319-376 chr4 69540338 69540568 + 2 NA Intergenic Intergenic -14439 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 398-275 chr5 101272591 101272885 + 2 NA Intergenic AluJr|SINE|Alu -369456 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 286-63 chr11 25437854 25438113 + 2 NA Intergenic Intergenic -751140 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 288-422 chr7 115382450 115382716 + 2 NA Intergenic Intergenic -151228 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 394-71 chr12 2445934 2446184 + 2 NA intron (NM_199460, intron 3 of 49).2 (GATG)n|Simple_repeat|Simple_repeat 176283 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 125-71 chr9 34861678 34861779 + 2 NA Intergenic L1MC4|LINE|L1 -23142 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 289-485 chr9 23529561 23529717 + 2 NA intron (NR_121602, intron 17 of 27) intron (NR_121602, intron 17 of 27) 142760 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 448-167 chr3 112210695 112210986 + 2 NA intron (NM_001320531, intron 14 of 27).2 intron (NM_001320531, intron 14 of 27).2 77417 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 122-38 chr4 31560134 31560241 + 2 NA Intergenic Intergenic 53643 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 229-276 chr4 72076070 72076240 + 2 NA intron (NM_001144756, intron 2 of 4) intron (NM_001144756, intron 2 of 4) 37023 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 238-91 chr13 47439653 47439842 + 2 NA Intergenic L1MEi|LINE|L1 492875 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 292-354 chr5 88327806 88327987 + 2 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) 58880 NR_039994 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 702-49 chr2 146973972 146974532 + 2 NA Intergenic Intergenic 387195 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 184-157 chr7 34668720 34668837 + 2 NA intron (NM_207172, intron 1 of 8) MLT1I|LTR|ERVL-MaLR 10539 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 826-12 chr11 15780344 15780919 + 2 NA Intergenic Intergenic 136746 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 420-308 chr9 84729687 84729974 + 2 NA intron (NM_001369534, intron 9 of 16) intron (NM_001369534, intron 9 of 16) 23929 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 384-113 chr14 78420167 78420458 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 16593 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 256-222 chr2 163444971 163445216 + 2 NA Intergenic Intergenic 290915 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 355-81 chr11 21298780 21299063 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 629335 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 322-264 chr2 124241169 124241414 + 2 NA intron (NM_130773, intron 2 of 23) intron (NM_130773, intron 2 of 23) 216004 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 396-171 chr2 102905829 102906174 + 2 NA Intergenic Intergenic -10279 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 635-113 chr8 115732616 115733050 + 2 NA Intergenic MIR|SINE|MIR -63858 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 380-126 chr14 70541436 70541721 + 2 NA Intergenic LTR19-int|LTR|ERV1 -6574 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 731-41 chr2 234763003 234763627 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 80647 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 357-348 chr5 79846740 79847079 + 2 NA Intergenic AluSx1|SINE|Alu -89670 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 568-12 chr10 44036287 44036792 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack 124137 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 297-270 chr20 59462200 59462377 + 2 NA Intergenic L2a|LINE|L2 -115221 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 328-204 chr17 11525112 11525289 + 2 NA intron (NM_001173462, intron 3 of 4) L4_A_Mam|LINE|RTE-X -73270 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 205-58 chr11 103596269 103596432 + 2 NA Intergenic Intergenic -253556 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 376-440 chrX 87250214 87250483 + 2 NA Intergenic L1M1|LINE|L1 -267454 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 482-248 chr7 51741378 51741710 + 2 NA Intergenic Intergenic -348288 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 425-328 chrX 14327386 14327766 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 83311 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 459-39 chr10 83377541 83377834 + 2 NA Intergenic L1PA11|LINE|L1 299402 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 206-62 chr14 30792315 30792418 + 2 NA Intergenic L1MEg|LINE|L1 -82169 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 387-282 chr5 64620471 64620754 + 2 NA Intergenic HERV16-int|LTR|ERVL 44962 NM_001271890 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 321-18 chr1 110915390 110915698 + 2 NA Intergenic L1ME3B|LINE|L1 42396 NM_000560 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 336-595 chrX 28408801 28409124 + 2 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 86701 NR_106750 102465140 NR_106750 ENSG00000277569 MIR6134 hsa-mir-6134 microRNA 6134 ncRNA 284-82 chr12 37963074 37963296 + 2 NA Intergenic ALR/Alpha|Satellite|centr -353589 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 345-156 chr14 68667285 68667568 + 2 NA intron (NM_001321818, intron 10 of 10) MLT2C2|LTR|ERVL -38639 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 529-224 chr8 131845735 131846108 + 2 NA Intergenic Intergenic -58172 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 118-15 chr12 61919988 61920097 + 2 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 272797 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 168-45 chr18 70972435 70972558 + 2 NA Intergenic L1M1|LINE|L1 -321542 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 497-148 chr20 6255508 6255819 + 2 NA Intergenic LTR16A1|LTR|ERVL -132119 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 277-183 chr2 38295038 38295263 + 2 NA 3' UTR (NM_001308076, exon 13 of 13) 3' UTR (NM_001308076, exon 13 of 13) 81380 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 163-80 chr3 53563754 53563846 + 2 NA intron (NM_001128840, intron 3 of 47) L1ME3B|LINE|L1 69189 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 234-128 chr17 15883242 15883412 + 2 NA Intergenic Intergenic -61590 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 345-539 chr8 132456529 132456750 + 2 NA intron (NM_004519, intron 1 of 14) AluSx1|SINE|Alu -9377 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 329-606 chr9 77968202 77968405 + 2 NA intron (NM_002072, intron 1 of 6) intron (NM_002072, intron 1 of 6) 63508 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 219-134 chr17 70654658 70654825 + 2 NA Intergenic Intergenic 485206 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 477-280 chr8 83066958 83067331 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 155040 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 493-252 chr5 172260353 172260840 + 2 NA intron (NM_152277, intron 1 of 2) intron (NM_152277, intron 1 of 2) 23168 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 417-257 chr7 11987079 11987381 + 2 NA Intergenic Intergenic -155032 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 347-21 chr1 153327444 153327673 + 2 NA Intergenic L1MC5|LINE|L1 -16840 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 510-10 chr1 94441433 94441738 + 2 NA intron (NM_002858, intron 1 of 22) L1MC4a|LINE|L1 23196 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 212-143 chr2 21387913 21388069 + 2 NA Intergenic AluSp|SINE|Alu 264005 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 364-147 chr15 81564225 81564514 + 2 NA Intergenic L2a|LINE|L2 -190156 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 163-40 chr13 34786210 34786302 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -145571 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 580-171 chr6 154036814 154037234 + 2 NA intron (NM_001145280, intron 1 of 3) L3|LINE|CR1 -2078 NM_001008504 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 295-494 chr9 73645722 73645980 + 2 NA Intergenic MER50|LTR|ERV1 493986 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 678-50 chr2 66203092 66203624 + 2 NA Intergenic L2b|LINE|L2 154970 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 339-12 chr1 60707473 60707677 + 2 NA intron (NR_110628, intron 4 of 5) L1MA3|LINE|L1 -84890 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 206-243 chr6 159479895 159480053 + 2 NA Intergenic Intergenic 96443 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 542-137 chr3 94207760 94208181 + 2 NA Intergenic Intergenic 144909 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 349-469 chr7 14562082 14562354 + 2 NA intron (NM_001350717, intron 19 of 24) THE1B-int|LTR|ERVL-MaLR 279232 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 192-176 chr6 73898404 73898542 + 2 NA Intergenic Intergenic -170978 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 385-7 chr1 107659328 107659688 + 2 NA intron (NM_006113, intron 19 of 26) intron (NM_006113, intron 19 of 26) 28991 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 286-242 chr20 2463973 2464141 + 2 NA intron (NM_003091, intron 3 of 6) intron (NM_003091, intron 3 of 6) -1010 NR_003684 100113378 NR_003684 SNORD119 - small nucleolar RNA, C/D box 119 snoRNA 226-93 chr14 62789770 62789971 + 2 NA intron (NM_139318, intron 9 of 10) L1MA9|LINE|L1 255588 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 783-21 chr13 78894540 78895190 + 2 NA Intergenic L1MB7|LINE|L1 -54815 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 267-60 chr10 121148049 121148248 + 2 NA Intergenic Intergenic 296786 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 323-112 chr12 41791288 41791505 + 2 NA Intergenic Intergenic 27207 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 359-166 chr16 11589299 11589555 + 2 NA Intergenic L1MB5|LINE|L1 -1961 NR_024320 9516 Hs.459940 NM_004862 ENSG00000189067 LITAF PIG7|SIMPLE|TP53I7 lipopolysaccharide induced TNF factor protein-coding 483-100 chr19 56767077 56767481 + 2 NA intron (NR_110744, intron 1 of 3) intron (NR_110744, intron 1 of 3) 1957 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 291-265 chr20 53356215 53356394 + 2 NA intron (NM_173485, intron 2 of 2) MIR|SINE|MIR 171021 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 258-306 chr5 3993247 3993441 + 2 NA Intergenic Intergenic 397512 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 342-516 chr8 79312910 79313155 + 2 NA Intergenic Intergenic -19156 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 183-36 chr12 45622193 45622284 + 2 NA Intergenic L1MB7|LINE|L1 105683 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 344-155 chr15 69511008 69511294 + 2 NA Intergenic MLT2B2|LTR|ERVL -50569 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 243-71 chr11 63120592 63120793 + 2 NA intron (NM_173586, intron 2 of 3) intron (NM_173586, intron 2 of 3) 23529 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 509-30 chr10 111877237 111877585 + 2 NA Intergenic LTR37A|LTR|ERV1 306354 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 389-149 chr19 21901886 21902098 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -49924 NM_001256653 7594 Hs.534365 NM_003423 ENSG00000198521 ZNF43 HTF6|KOX27|ZNF39L1 zinc finger protein 43 protein-coding 229-121 chr15 27306398 27306587 + 2 NA intron (NM_001270873, intron 3 of 5) (TA)n|Simple_repeat|Simple_repeat -145173 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 304-405 chr5 15268321 15268606 + 2 NA Intergenic Intergenic -1903 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 928-17 chr2 128466576 128467163 + 2 NA Intergenic MER52A|LTR|ERV1 -148001 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 268-229 chr21 45916978 45917162 + 2 NA intron (NM_001348241, intron 11 of 16) intron (NM_001348241, intron 11 of 16) -55900 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 357-122 chr14 82120317 82120505 + 2 NA Intergenic Intergenic -377273 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 301-475 chr9 11354344 11354574 + 2 NA Intergenic Intergenic 741253 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 137-34 chr17 54741858 54741937 + 2 NA Intergenic Intergenic -158794 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 341-548 chr8 137350257 137350545 + 2 NA Intergenic L1PA14|LINE|L1 63187 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 272-165 chr18 28991761 28991937 + 2 NA Intergenic L1MD1|LINE|L1 -814719 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 440-157 chr3 25130216 25130444 + 2 NA intron (NM_001290216, intron 3 of 10) L2c|LINE|L2 -210472 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 381-330 chr6 56438276 56438485 + 2 NA Intergenic Intergenic -44252 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 196-214 chr5 141282737 141282866 + 2 NA Intergenic L1MA4|LINE|L1 21248 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 241-427 chr9 88763414 88763611 + 2 NA Intergenic (GGAA)n|Simple_repeat|Simple_repeat -17607 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 298-281 chr22 38822446 38822649 + 2 NA 3' UTR (NM_014293, exon 5 of 5) 3' UTR (NM_014293, exon 5 of 5) 21481 NM_014293 23467 Hs.91622 NM_014293 ENSG00000221890 NPTXR NPR neuronal pentraxin receptor protein-coding 142-41 chr2 180031748 180031863 + 2 NA Intergenic L1MA2|LINE|L1 -24508 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 371-80 chr12 23471343 23471665 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 113082 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 575-192 chr8 41627286 41627672 + 2 NA Intergenic Intergenic 19880 NM_152568 157848 NM_152568 ENSG00000165066 NKX6-3 NKX6.3 NK6 homeobox 3 protein-coding 316-552 chr8 89392574 89392779 + 2 NA Intergenic Intergenic 365035 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 270-326 chr6 26623652 26623851 + 2 NA Intergenic Intergenic 26798 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 301-375 chr5 128301793 128302036 + 2 NA intron (NM_001999, intron 46 of 64) intron (NM_001999, intron 46 of 64) 218148 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 134-9 chr10 32557052 32557172 + 2 NA intron (NR_109826, intron 13 of 16) intron (NR_109826, intron 13 of 16) 110972 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 382-336 chr5 105531313 105531550 + 2 NA Intergenic L1MEg|LINE|L1 431957 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 319-571 chr9 27153002 27153189 + 2 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 43954 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 256-64 chr11 37955836 37956088 + 2 NA Intergenic L1PB2|LINE|L1 17361 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 448-100 chr19 31598195 31598504 + 2 NA Intergenic AluSc|SINE|Alu 6068 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 412-247 chr5 9856702 9857084 + 2 NA intron (NR_147004, intron 1 of 1) L1MA4|LINE|L1 2516 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 273-383 chr6 34014652 34014903 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -14726 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 132-83 chr8 9603757 9603870 + 2 NA intron (NM_003747, intron 2 of 26) intron (NM_003747, intron 2 of 26) 47901 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 356-449 chr7 41210464 41210696 + 2 NA Intergenic L1ME3|LINE|L1 108976 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 252-191 chr2 66607237 66607395 + 2 NA intron (NR_110156, intron 1 of 5) MER50|LTR|ERV1 33286 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 425-167 chr21 16483871 16484133 + 2 NA intron (NR_136550, intron 1 of 3) L1PB1|LINE|L1 -51570 NR_136547 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 509-95 chr18 960820 961162 + 2 NA Intergenic Intergenic -32998 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 263-393 chr7 43182110 43182349 + 2 NA intron (NM_015052, intron 2 of 29) L1MA6|LINE|L1 31334 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 368-138 chr14 48136889 48137094 + 2 NA Intergenic Intergenic -341977 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 381-80 chr12 5999814 6000102 + 2 NA intron (NM_000552, intron 34 of 51) L1MC4|LINE|L1 40225 NR_145989 109729112 NR_145989 SNORA120 - small nucleolar RNA, H/ACA box 120 snoRNA 590-94 chr20 55248540 55248918 + 2 NA Intergenic L1PA8|LINE|L1 -174314 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 528-61 chr12 50577634 50578006 + 2 NA intron (NM_173602, intron 1 of 37) Charlie1a|DNA|hAT-Charlie 72835 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 331-573 chrX 91731770 91732091 + 2 NA Intergenic L1PA10|LINE|L1 -103531 NM_001168363 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 314-34 chr1 180985777 180985969 + 2 NA intron (NM_005819, intron 6 of 7) intron (NM_005819, intron 6 of 7) -30986 NR_145481 103344928 Hs.665319 NR_145481 ENSG00000232586 KIAA1614-AS1 - KIAA1614 antisense RNA 1 ncRNA 333-179 chr16 80966334 80966597 + 2 NA TTS (NM_001351968) TTS (NM_001351968) 31211 NM_001351973 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 507-158 chr3 27235522 27235943 + 2 NA intron (NM_199347, intron 24 of 24) L1PA12|LINE|L1 -19209 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 220-208 chr21 30349853 30350031 + 2 NA Intergenic Intergenic -1336 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 538-157 chr3 120828802 120829259 + 2 NA intron (NR_135570, intron 1 of 1) MIRc|SINE|MIR 7327 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 606-14 chr1 218564360 218564842 + 2 NA intron (NR_031644, intron 2 of 6) L1M5|LINE|L1 54506 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 363-42 chr10 24507365 24507597 + 2 NA intron (NM_001321681, intron 5 of 13) L1MEc|LINE|L1 40950 NM_001282770 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 282-364 chr5 14790984 14791171 + 2 NA intron (NM_054027, intron 1 of 11) MIRb|SINE|MIR 34935 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 453-62 chr13 82290252 82290687 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -1063486 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 289-438 chr7 52573981 52574210 + 2 NA Intergenic Intergenic -461538 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 441-164 chr3 108281178 108281520 + 2 NA Intergenic L1MEd|LINE|L1 -15141 NM_001282556 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 468-201 chr3 86140692 86141014 + 2 NA Intergenic Intergenic -312803 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 227-76 chr12 20026047 20026239 + 2 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 11458 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 221-234 chr5 13577424 13577600 + 2 NA Intergenic Intergenic 366968 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 542-25 chr10 90486749 90487202 + 2 NA intron (NR_110657, intron 2 of 6) L2a|LINE|L2 53830 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 442-298 chr8 129322436 129322821 + 2 NA Intergenic Intergenic -81388 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 475-178 chr3 43097052 43097381 + 2 NA intron (NM_032806, intron 1 of 1) intron (NM_032806, intron 1 of 1) 8863 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 193-197 chr8 101808206 101808366 + 2 NA intron (NM_001040628, intron 4 of 7) L3|LINE|CR1 -17317 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 316-196 chr16 26324615 26324845 + 2 NA Intergenic L1MCb|LINE|L1 299493 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 266-161 chr19 23646744 23646979 + 2 NA Intergenic L1MA8|LINE|L1 40351 NM_138330 171392 Hs.264345 NM_138330 ENSG00000197372 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 446-193 chr3 97957977 97958385 + 2 NA intron (NM_001042533, intron 4 of 9) intron (NM_001042533, intron 4 of 9) 14250 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 418-174 chr3 180038014 180038274 + 2 NA Intergenic L1ME3F|LINE|L1 -1207 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 292-392 chr7 1309126 1309322 + 2 NA Intergenic (ATGATG)n|Simple_repeat|Simple_repeat 76352 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 336-270 chr2 70799176 70799378 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -8634 NM_001004311 344018 Hs.407636 NM_001004311 ENSG00000183733 FIGLA BHLHC8|FIGALPHA|POF6 folliculogenesis specific bHLH transcription factor protein-coding 355-87 chr11 39008559 39008905 + 2 NA Intergenic L1PB1|LINE|L1 359874 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 164-58 chr2 133900886 133900998 + 2 NA Intergenic Intergenic -218993 NM_001371457 400-366 chr9 84859102 84859340 + 2 NA intron (NM_001018064, intron 12 of 17) intron (NM_001018064, intron 12 of 17) 153320 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 266-99 chr13 64693556 64693819 + 2 NA Intergenic L1MC4a|LINE|L1 -617676 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 239-195 chr2 162049079 162049267 + 2 NA intron (NM_001935, intron 2 of 25) intron (NM_001935, intron 2 of 25) 25042 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 490-149 chr2 103376758 103377104 + 2 NA Intergenic L1MA9|LINE|L1 -392502 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 609-74 chr3 13725661 13726209 + 2 NA intron (NR_027103, intron 4 of 5) L1MDa|LINE|L1 75214 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 226-343 chr8 83077253 83077422 + 2 NA Intergenic L2b|LINE|L2 165233 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 200-43 chr11 21831870 21832046 + 2 NA Intergenic MER57A-int|LTR|ERV1 -361127 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 202-37 chr10 115294542 115294709 + 2 NA intron (NM_207303, intron 15 of 28) L1MA5A|LINE|L1 201260 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 567-134 chr4 113630776 113631269 + 2 NA intron (NM_001221, intron 3 of 18) L3|LINE|CR1 130716 NM_001321572 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 236-207 chr22 28402365 28402563 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -57405 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 687-60 chr2 82511094 82511658 + 2 NA Intergenic L1PREC2|LINE|L1 -345427 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 406-270 chr7 13245490 13245800 + 2 NA Intergenic L1MEf|LINE|L1 558012 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 307-382 chr5 42787881 42788158 + 2 NA intron (NM_001134848, intron 6 of 8) L1PA17|LINE|L1 23873 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 403-108 chr14 90378219 90378516 + 2 NA Intergenic MIRb|SINE|MIR -18135 NM_001363669 801 Hs.282410 NM_006888 ENSG00000198668 CALM1 CALML2|CAM2|CAM3|CAMB|CAMC|CAMI|CAMIII|CPVT4|DD132|LQT14|PHKD|caM calmodulin 1 protein-coding 566-39 chr12 94316698 94317045 + 2 NA intron (NM_001042399, intron 13 of 15) L1PREC2|LINE|L1 54350 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 372-409 chr5 93206193 93206421 + 2 NA Intergenic Intergenic 365036 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 554-171 chr5 44095614 44096085 + 2 NA Intergenic Intergenic -292883 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 415-63 chr12 114028225 114028459 + 2 NA Intergenic LTR40a|LTR|ERVL -62017 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 497-58 chr12 72897268 72897683 + 2 NA Intergenic Intergenic -261715 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 211-6 chr1 40947195 40947373 + 2 NA Intergenic Intergenic -32412 NR_125440 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 665-62 chr3 180125101 180125654 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -88440 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 525-105 chr2 4904541 4904892 + 2 NA Intergenic Intergenic -248494 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 367-154 chr16 78344920 78345164 + 2 NA intron (NM_001291997, intron 4 of 7) MIR|SINE|MIR 245388 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 159-40 chr2 49125498 49125619 + 2 NA intron (NM_000145, intron 1 of 9) L2a|LINE|L2 28957 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 330-369 chr4 7592745 7592988 + 2 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) 132838 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 122-55 chr8 88720859 88720938 + 2 NA Intergenic L1MA9|LINE|L1 -393415 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 259-323 chr5 118013496 118013631 + 2 NA intron (NR_104997, intron 2 of 2) L1M5|LINE|L1 -269011 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 333-151 chr14 65507276 65507516 + 2 NA intron (NM_004480, intron 2 of 9) L1MA2|LINE|L1 36294 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 374-418 chr9 107052427 107052773 + 2 NA intron (NR_126029, intron 4 of 4) intron (NR_126029, intron 4 of 4) 50388 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 474-230 chr5 45016646 45017036 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 207894 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 324-444 chr5 164983981 164984206 + 2 NA Intergenic Intergenic 513814 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 224-272 chr6 33520520 33520728 + 2 NA Intergenic LTR12C|LTR|ERV1 59652 NM_001188 578 Hs.485139 NM_001188 ENSG00000030110 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2 antagonist/killer 1 protein-coding 145-82 chr7 111819163 111819247 + 2 NA intron (NM_001363540, intron 27 of 52) intron (NM_001363540, intron 27 of 52) 10700 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 362-71 chr10 83920207 83920535 + 2 NA Intergenic LTR78|LTR|ERV1 -219138 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 235-222 chr22 42038070 42038260 + 2 NA Intergenic L1MA9|LINE|L1 32647 NM_000262 4668 Hs.75372 NM_000262 ENSG00000198951 NAGA D22S674|GALB alpha-N-acetylgalactosaminidase protein-coding 526-114 chr2 21935898 21936318 + 2 NA Intergenic Intergenic -225456 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 444-232 chr7 2526159 2526572 + 2 NA promoter-TSS (NR_039791) promoter-TSS (NR_039791) -709 NR_039791 100616116 NR_039791 ENSG00000264357 MIR4648 - microRNA 4648 ncRNA 318-294 chr2 166822918 166823199 + 2 NA Intergenic Intergenic -65429 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 363-18 chr1 159486224 159486474 + 2 NA Intergenic L2a|LINE|L2 46627 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 381-28 chr1 221196288 221196613 + 2 NA Intergenic L1MB7|LINE|L1 139846 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 225-119 chr16 78037467 78037669 + 2 NA Intergenic Intergenic 15020 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 446-297 chr8 52517971 52518362 + 2 NA Intergenic L1MEd|LINE|L1 47264 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 854-31 chr3 180946403 180946961 + 2 NA intron (NM_005087, intron 3 of 16) intron (NM_005087, intron 3 of 16) 34011 NM_001363882 8087 Hs.478407 NM_005087 ENSG00000114416 FXR1 FXR1P FMR1 autosomal homolog 1 protein-coding 299-159 chr16 53382550 53382751 + 2 NA intron (NR_119378, intron 2 of 2) L1MDa|LINE|L1 9157 NR_119378 102723373 Hs.569678 NR_119378 ENSG00000261804 LOC102723373 - uncharacterized LOC102723373 ncRNA 353-51 chr10 29720009 29720246 + 2 NA intron (NM_001323599, intron 1 of 38) AluJo|SINE|Alu 15674 NM_003174 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 348-115 chr12 60946199 60946515 + 2 NA Intergenic MER21C|LTR|ERVL 1246482 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 551-103 chr20 16444105 16444421 + 2 NA intron (NM_001199866, intron 12 of 22) L1M5|LINE|L1 129185 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 358-41 chr10 43053298 43053589 + 2 NA Intergenic L1MC4|LINE|L1 -23584 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 281-74 chr11 107407867 107408012 + 2 NA intron (NM_152434, intron 10 of 17) intron (NM_152434, intron 10 of 17) 49907 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 340-38 chr1 244557310 244557628 + 2 NA intron (NM_001130957, intron 9 of 21) L1M3|LINE|L1 -95579 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 291-240 chr2 185076978 185077249 + 2 NA Intergenic LTR33|LTR|ERVL 89959 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 338-347 chr3 102411170 102411351 + 2 NA Intergenic Intergenic -23755 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 390-15 chr1 147470037 147470403 + 2 NA intron (NR_038423, intron 3 of 3) L1MB7|LINE|L1 47655 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 364-341 chr5 46212503 46212860 + 2 NA Intergenic ALR/Alpha|Satellite|centr -516301 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 351-210 chr2 34374340 34374628 + 2 NA Intergenic L1MC5|LINE|L1 -303073 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 252-351 chr5 152477421 152477629 + 2 NA Intergenic MLT2C1|LTR|ERVL -72246 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 323-176 chr16 55426278 55426485 + 2 NA TTS (NR_147198) TTS (NR_147198) 35916 NR_147198 107984884 Hs.666473 NR_147198 MMP2-AS1 - MMP2 antisense RNA 1 ncRNA 214-284 chr6 119552268 119552436 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 2544 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 400-150 chr2 13175565 13175921 + 2 NA Intergenic (CTCTGCCA)n|Simple_repeat|Simple_repeat -168730 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 234-346 chr6 123157985 123158132 + 2 NA Intergenic Intergenic 161823 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 175-13 chr1 164392291 164392436 + 2 NA Intergenic L1MB7|LINE|L1 -166997 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 350-108 chr12 125462001 125462307 + 2 NA intron (NM_052907, intron 3 of 8) MLT1K|LTR|ERVL-MaLR 135538 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 212-128 chr18 45715080 45715231 + 2 NA Intergenic Intergenic -9026 NM_001128588 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 562-108 chr2 83883311 83883815 + 2 NA Intergenic MLT2B2|LTR|ERVL 360749 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 282-21 chr1 195118342 195118596 + 2 NA Intergenic Intergenic 970246 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 329-521 chr7 4286772 4287048 + 2 NA Intergenic L1MD2|LINE|L1 -152073 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 327-282 chr2 189277514 189277786 + 2 NA Intergenic Intergenic -97889 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 321-550 chr8 72963048 72963248 + 2 NA Intergenic MER84|LTR|ERV1 -45716 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 373-398 chr8 49310558 49310784 + 2 NA Intergenic Intergenic 201509 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 382-185 chr2 49538199 49538427 + 2 NA Intergenic LTR8|LTR|ERV1 -383786 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 468-58 chr12 47364356 47364813 + 2 NA promoter-TSS (NR_039715) promoter-TSS (NR_039715) -315 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 256-413 chr8 71074070 71074274 + 2 NA Intergenic L1MA7|LINE|L1 282534 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 322-256 chr2 106068220 106068436 + 2 NA intron (NM_032411, intron 1 of 3) intron (NM_032411, intron 1 of 3) 2640 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 368-177 chr16 54605970 54606320 + 2 NA Intergenic L1MD2|LINE|L1 -235446 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 294-360 chr5 9236213 9236493 + 2 NA intron (NM_003966, intron 6 of 22) intron (NM_003966, intron 6 of 22) -182458 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 295-39 chr10 11731085 11731256 + 2 NA Intergenic MER52A|LTR|ERV1 -11212 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 273-400 chr6 137385430 137385645 + 2 NA Intergenic Intergenic 108857 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 333-334 chr22 43335461 43335689 + 2 NA intron (NM_173050, intron 2 of 21) intron (NM_173050, intron 2 of 21) 7797 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 510-139 chr2 50248237 50248573 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) 99349 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 356-128 chr13 50728855 50729125 + 2 NA intron (NM_198989, intron 1 of 1) Tigger2|DNA|TcMar-Tigger -78865 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 393-360 chr8 99455797 99456127 + 2 NA intron (NM_017890, intron 23 of 61) L1ME1|LINE|L1 80768 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 354-8 chr1 60607753 60607965 + 2 NA intron (NR_146508, intron 1 of 7) LTR16B1|LTR|ERVL 14826 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 620-6 chr1 181176988 181177472 + 2 NA intron (NR_125966, intron 2 of 2) MLT1C|LTR|ERVL-MaLR 2746 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 547-209 chr6 145691000 145691481 + 2 NA intron (NM_001360064, intron 1 of 3) L1MDa|LINE|L1 -4363 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 437-175 chr3 95189277 95189527 + 2 NA Intergenic L1PA6|LINE|L1 251139 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 474-239 chr5 105736920 105737316 + 2 NA Intergenic Intergenic 637644 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 325-551 chr8 123508533 123508733 + 2 NA intron (NM_001242463, intron 4 of 6) intron (NM_001242463, intron 4 of 6) 23510 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 588-23 chr11 99188701 99189218 + 2 NA intron (NM_001243270, intron 1 of 23) L1MA8|LINE|L1 168010 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 395-237 chr3 174633155 174633383 + 2 NA Intergenic Intergenic -226065 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 325-430 chr5 16163369 16163663 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 16275 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 338-41 chr1 242575704 242576025 + 2 NA Intergenic Intergenic -51167 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 322-373 chr4 70346439 70346753 + 2 NA Intergenic Intergenic 11615 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 362-449 chr8 128211294 128211647 + 2 NA Intergenic L2c|LINE|L2 61354 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 240-175 chr17 43846672 43846806 + 2 NA promoter-TSS (NM_001168324) promoter-TSS (NM_001168324) -437 NM_001168323 146894 Hs.147313 NM_145273 ENSG00000161649 CD300LG CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4 CD300 molecule like family member g protein-coding 207-193 chr3 96409322 96409459 + 2 NA Intergenic L1MC1|LINE|L1 49426 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 754-67 chr5 82877790 82878353 + 2 NA Intergenic L1MA4A|LINE|L1 -18235 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 214-177 chr2 186972939 186973138 + 2 NA Intergenic Intergenic -123868 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 386-181 chr2 115855291 115855486 + 2 NA Intergenic L1MA4|LINE|L1 511573 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 305-392 chr4 64757146 64757310 + 2 NA Intergenic Intergenic 247272 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 245-37 chr10 36258707 36258889 + 2 NA Intergenic Intergenic 480496 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 332-549 chr8 127555026 127555345 + 2 NA Intergenic Intergenic -73046 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 384-212 chr22 31010657 31010869 + 2 NA Intergenic L1MC3|LINE|L1 41552 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 358-421 chr6 168751120 168751425 + 2 NA Intergenic L1PB1|LINE|L1 213110 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 116-24 chr21 23768625 23768708 + 2 NA Intergenic Intergenic -383831 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 450-46 chr11 24925962 24926278 + 2 NA intron (NM_001009909, intron 7 of 11) intron (NM_001009909, intron 7 of 11) 429067 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 341-107 chr12 14789179 14789476 + 2 NA intron (NM_016312, intron 10 of 11) AluY|SINE|Alu 14151 NM_016312 51729 Hs.655138 NM_016312 ENSG00000084463 WBP11 NPWBP|PPP1R165|SIPP1|WBP-11 WW domain binding protein 11 protein-coding 256-439 chr8 135960273 135960517 + 2 NA Intergenic Intergenic 502939 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 165-51 chr2 82590976 82591124 + 2 NA Intergenic Intergenic -265753 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 298-13 chr1 115836129 115836390 + 2 NA TTS (NM_005599) TTS (NM_005599) 4444 NM_001111061 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 407-3 chr1 34477250 34477578 + 2 NA Intergenic Intergenic 192280 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 368-300 chr3 111817652 111817936 + 2 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -41386 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 267-424 chr8 96048345 96048546 + 2 NA Intergenic Intergenic -100097 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 302-458 chr8 105936728 105937026 + 2 NA intron (NR_125797, intron 1 of 4) intron (NR_125797, intron 1 of 4) 123626 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 309-307 chr20 47690345 47690583 + 2 NA intron (NM_198596, intron 4 of 20) L2a|LINE|L2 95600 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 240-154 chr15 58428731 58428882 + 2 NA Intergenic Intergenic -3185 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 233-311 chr5 115821919 115822136 + 2 NA Intergenic L2a|LINE|L2 -5368 NM_001323565 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 324-283 chr2 143526989 143527257 + 2 NA intron (NM_018460, intron 10 of 13) intron (NM_018460, intron 10 of 13) 397704 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 270-161 chr18 30721893 30722048 + 2 NA Intergenic L1M3d|LINE|L1 320772 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 227-343 chr7 42269768 42269966 + 2 NA Intergenic (TTAT)n|Simple_repeat|Simple_repeat -32658 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 319-3 chr1 40017681 40017990 + 2 NA Intergenic L1M5|LINE|L1 -22230 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 533-24 chr11 36536186 36536607 + 2 NA Intergenic L1ME3A|LINE|L1 -26124 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 396-114 chr15 60283870 60284109 + 2 NA Intergenic Intergenic 113997 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 231-43 chr10 111679005 111679182 + 2 NA Intergenic (GTTT)n|Simple_repeat|Simple_repeat 504672 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 266-294 chr4 89147762 89147967 + 2 NA Intergenic MER52D|LTR|ERV1 35047 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 579-45 chr16 19967512 19967994 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -82119 NM_001304771 51704 Hs.148685 NM_016235 ENSG00000167191 GPRC5B RAIG-2|RAIG2 G protein-coupled receptor class C group 5 member B protein-coding 155-47 chr17 3987376 3987515 + 2 NA Intergenic Intergenic 10342 NR_146884 105371496 Hs.579239 NR_146884 LINC01975 - long intergenic non-protein coding RNA 1975 ncRNA 271-419 chr8 5538781 5538975 + 2 NA Intergenic Intergenic -543964 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 479-60 chr14 56131314 56131724 + 2 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 13108 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 406-230 chr5 59280351 59280641 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -4381 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 625-111 chr8 71064827 71065195 + 2 NA Intergenic MIRc|SINE|MIR 291695 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 134-48 chr20 11278571 11278673 + 2 NA Intergenic L2a|LINE|L2 -5239 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 336-124 chr12 29877128 29877344 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -92477 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 474-188 chr3 168196738 168197076 + 2 NA Intergenic Intergenic -52615 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 699-43 chr17 72036598 72037155 + 2 NA intron (NR_110877, intron 2 of 2) MLT1A0|LTR|ERVL-MaLR 6222 NR_110132 102606463 Hs.512309 NR_110124 ENSG00000256124 LINC01152 CMPD|TCONS_00025128 long intergenic non-protein coding RNA 1152 ncRNA 147-7 chr10 63218862 63219002 + 2 NA intron (NR_134512, intron 1 of 21) intron (NR_134512, intron 1 of 21) 50291 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 335-105 chr11 103747919 103748140 + 2 NA Intergenic Intergenic -101877 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 424-285 chr8 133905066 133905351 + 2 NA Intergenic L2|LINE|L2 18712 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 247-135 chr15 87905360 87905523 + 2 NA intron (NM_001012338, intron 17 of 19) intron (NM_001012338, intron 17 of 19) 40827 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 215-326 chr8 136009964 136010129 + 2 NA Intergenic Intergenic -520752 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 146-3 chr1 57365142 57365252 + 2 NA intron (NM_001353980, intron 4 of 5) (AT)n|Simple_repeat|Simple_repeat 57915 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 279-84 chr12 115656710 115656881 + 2 NA Intergenic Intergenic 491859 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 266-92 chr12 91167560 91167772 + 2 NA intron (NM_001920, intron 2 of 7) intron (NM_001920, intron 2 of 7) 10980 NM_133505 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 349-463 chr6 148635000 148635324 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -111868 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 174-102 chr4 44436429 44436531 + 2 NA intron (NM_198353, intron 1 of 1) L1MC5a|LINE|L1 12329 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 491-232 chr6 127613604 127614001 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger 36628 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 377-388 chr8 34440746 34441015 + 2 NA Intergenic L1P2|LINE|L1 -343041 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 380-102 chr12 104548755 104548957 + 2 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) -42777 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 276-362 chr5 21591304 21591521 + 2 NA Intergenic Intergenic 131932 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 350-432 chr6 40099948 40100262 + 2 NA Intergenic Intergenic -165643 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 313-527 chr8 84885500 84885782 + 2 NA intron (NM_001354323, intron 7 of 7) intron (NM_001354323, intron 7 of 7) 179714 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 332-302 chr21 27305324 27305609 + 2 NA Intergenic Intergenic -338378 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 332-240 chr2 13855248 13855424 + 2 NA Intergenic Intergenic 545622 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 663-43 chr17 55925877 55926309 + 2 NA Intergenic Intergenic 174988 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 426-117 chr19 28175559 28175776 + 2 NA Intergenic L2a|LINE|L2 -381727 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 443-143 chr2 22055665 22055954 + 2 NA Intergenic Intergenic -345157 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 634-98 chr3 27302755 27303138 + 2 NA intron (NM_152534, intron 13 of 38) intron (NM_152534, intron 13 of 38) 66437 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 214-2 chr1 20812973 20813119 + 2 NA intron (NM_003760, intron 30 of 31) intron (NM_003760, intron 30 of 31) -26358 NM_016287 50809 Hs.142442 NM_016287 ENSG00000127483 HP1BP3 HP1-BP74|HP1BP74 heterochromatin protein 1 binding protein 3 protein-coding 510-47 chr11 68696100 68696406 + 2 NA Intergenic L1MD2|LINE|L1 11709 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 258-376 chr7 109939163 109939419 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 20922 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 436-106 chr17 11322608 11322996 + 2 NA intron (NM_001173461, intron 2 of 3) intron (NM_001173461, intron 2 of 3) 81379 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 450-77 chr14 33502987 33503241 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -205823 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 352-86 chr11 102416988 102417236 + 2 NA intron (NM_052932, intron 2 of 4) L1PA15|LINE|L1 35653 NM_052932 114908 Hs.503709 NM_052932 ENSG00000152558 TMEM123 KCT3|PORIMIN|PORMIN transmembrane protein 123 protein-coding 238-417 chr9 78342088 78342265 + 2 NA Intergenic Intergenic 45051 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 484-8 chr1 79264103 79264436 + 2 NA Intergenic Intergenic -257539 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 301-317 chr4 66676475 66676632 + 2 NA Intergenic L1M5|LINE|L1 399729 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 372-195 chr17 72767740 72767945 + 2 NA intron (NM_001352692, intron 6 of 9) LTR8A|LTR|ERV1 -127370 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 359-9 chr1 58121165 58121390 + 2 NA intron (NM_001353980, intron 1 of 5) L2|LINE|L2 129226 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 243-316 chr4 31814558 31814717 + 2 NA Intergenic LTR79|LTR|ERVL -182742 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 227-122 chr16 49319358 49319563 + 2 NA Intergenic L1ME3G|LINE|L1 -37622 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 310-472 chr7 23864418 23864597 + 2 NA Intergenic Intergenic 154288 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 375-276 chr3 193400599 193400937 + 2 NA 3' UTR (NM_032279, exon 30 of 30) 3' UTR (NM_032279, exon 30 of 30) -22015 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 653-96 chr4 176592245 176592723 + 2 NA Intergenic AluJr|SINE|Alu 200438 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 204-246 chr6 34587976 34588155 + 2 NA 3' UTR (NM_024294, exon 5 of 5) 3' UTR (NM_024294, exon 5 of 5) -31732 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 403-33 chr10 98929368 98929710 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -4971 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 278-111 chr14 54415303 54415521 + 2 NA intron (NM_001330173, intron 5 of 8) MIR|SINE|MIR 18405 NM_005192 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 304-415 chr5 52328207 52328377 + 2 NA Intergenic Intergenic 320261 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 329-190 chr15 68061586 68061796 + 2 NA intron (NM_001320687, intron 2 of 14) intron (NM_001320687, intron 2 of 14) 7115 NM_001320687 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 195-256 chr9 77895161 77895326 + 2 NA intron (NM_002072, intron 2 of 6) MIR|SINE|MIR 136568 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 338-214 chr17 57173196 57173404 + 2 NA Intergenic HAL1ME|LINE|L1 77811 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 678-51 chr2 67542150 67542569 + 2 NA Intergenic L1PB3|LINE|L1 145026 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 364-463 chr8 137098367 137098597 + 2 NA Intergenic Intergenic 315106 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 590-130 chr5 20097935 20098356 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -109945 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 199-146 chr21 10719321 10719488 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 197890 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 525-172 chr4 57635496 57636012 + 2 NA Intergenic (ATGA)n|Simple_repeat|Simple_repeat 209882 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 333-468 chr5 111049609 111049931 + 2 NA Intergenic MIR|SINE|MIR -20310 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 509-187 chr5 41158909 41159246 + 2 NA intron (NM_000065, intron 12 of 17) intron (NM_000065, intron 12 of 17) 54455 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 385-386 chr8 119320389 119320746 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -4604 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 502-187 chr3 173741860 173742187 + 2 NA intron (NM_001365928, intron 3 of 6) intron (NM_001365928, intron 3 of 6) 157589 NM_001365927 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 418-293 chr8 116248579 116248850 + 2 NA intron (NR_046215, intron 4 of 13) ERV3-16A3_I-int|LTR|ERVL 76345 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 679-79 chr4 43452208 43452675 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 40102 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 227-410 chrX 87363978 87364142 + 2 NA Intergenic L1MA1|LINE|L1 -153742 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 367-426 chr7 93874285 93874581 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 16320 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 375-285 chr4 58288171 58288453 + 2 NA Intergenic Intergenic 248016 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 219-183 chr2 143169834 143169996 + 2 NA intron (NM_018460, intron 2 of 13) intron (NM_018460, intron 2 of 13) 40496 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 220-280 chr5 30811033 30811213 + 2 NA Intergenic Intergenic -382563 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 599-113 chr6 27400215 27400656 + 2 NA exon (NM_001322289, exon 4 of 4) exon (NM_001322289, exon 4 of 4) 11717 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 319-432 chr5 153562214 153562481 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 70175 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 398-282 chr5 133557162 133557437 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 55242 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 389-394 chrX 81442643 81442988 + 2 NA Intergenic L1PA16|LINE|L1 240713 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 363-364 chr5 92980746 92981097 + 2 NA Intergenic Intergenic 590422 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 236-33 chr10 6541355 6541520 + 2 NA intron (NM_001323265, intron 1 of 17) L3|LINE|CR1 38839 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 199-83 chr17 69818439 69818628 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -143174 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 267-161 chr18 75147612 75147762 + 2 NA Intergenic L1PA16|LINE|L1 57826 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 478-104 chr16 48002289 48002618 + 2 NA Intergenic MER39B|LTR|ERV1 36764 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 231-171 chr2 105692672 105692846 + 2 NA Intergenic Intergenic -52153 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 224-305 chr7 153141895 153142094 + 2 NA Intergenic L1M4b|LINE|L1 270240 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 276-204 chr18 61970995 61971235 + 2 NA Intergenic (ATATA)n|Simple_repeat|Simple_repeat -78108 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 578-119 chr3 112970164 112970633 + 2 NA intron (NM_138806, intron 1 of 7) intron (NM_138806, intron 1 of 7) 4705 NM_138940 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 488-269 chr8 77601773 77602183 + 2 NA Intergenic L1PA5|LINE|L1 151281 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 425-156 chr2 199294737 199295076 + 2 NA intron (NM_001172509, intron 10 of 10) intron (NM_001172509, intron 10 of 10) 163033 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 390-202 chr2 211403872 211404200 + 2 NA intron (NM_005235, intron 25 of 27) intron (NM_005235, intron 25 of 27) 786465 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 185-135 chr3 42710931 42711083 + 2 NA intron (NM_144719, intron 14 of 15) AluSz|SINE|Alu -8209 NM_020707 57467 Hs.476041 NM_020707 ENSG00000010282 HHATL C3orf3|GUP1|MBOAT3|MSTP002|OACT3 hedgehog acyltransferase like protein-coding 527-113 chr18 13168475 13168888 + 2 NA Intergenic AluSg7|SINE|Alu -50079 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 278-136 chr15 96612319 96612510 + 2 NA Intergenic Intergenic 169240 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 313-123 chr13 63199102 63199389 + 2 NA intron (NR_126409, intron 5 of 6) intron (NR_126409, intron 5 of 6) 128849 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 230-362 chr7 125459354 125459570 + 2 NA Intergenic L1M4b|LINE|L1 -195171 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 113-19 chr14 84220072 84220148 + 2 NA Intergenic Intergenic -1051822 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 517-117 chr19 58202308 58202673 + 2 NA intron (NM_133502, intron 4 of 7) intron (NM_133502, intron 4 of 7) 19429 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 570-56 chr13 112153864 112154241 + 2 NA Intergenic Intergenic 6658 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 335-566 chr9 75691333 75691658 + 2 NA Intergenic Intergenic -199149 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 379-236 chr4 65434470 65434769 + 2 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 234869 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 403-114 chr15 87076650 87076971 + 2 NA Intergenic L1M4|LINE|L1 -88384 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 467-270 chr7 79334880 79335339 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -117848 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 275-8 chr1 82531567 82531717 + 2 NA Intergenic L1PA11|LINE|L1 -371541 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 1008-8 chr2 54793265 54793939 + 2 NA intron (NM_001039753, intron 1 of 40) MLT1J|LTR|ERVL-MaLR 68590 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 505-114 chr17 32639490 32639909 + 2 NA intron (NM_015194, intron 19 of 21) intron (NM_015194, intron 19 of 21) 152706 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 440-106 chr19 28634944 28635357 + 2 NA intron (NR_110759, intron 5 of 9) L1PA15-16|LINE|L1 28462 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 405-272 chr6 38959595 38959921 + 2 NA intron (NM_001371, intron 81 of 91) L1MA6|LINE|L1 -6651 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 498-199 chr4 115960798 115961146 + 2 NA Intergenic Intergenic -338753 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 254-26 chr1 228055467 228055626 + 2 NA intron (NM_033131, intron 3 of 3) (TAGATA)n|Simple_repeat|Simple_repeat 21004 NR_158166 100506571 NR_158166 LINC02809 - long intergenic non-protein coding RNA 2809 ncRNA 222-123 chr15 78055084 78055260 + 2 NA intron (NM_144572, intron 1 of 12) L1ME1|LINE|L1 22480 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 380-345 chr6 120257396 120257678 + 2 NA Intergenic L1ME1|LINE|L1 242358 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 548-223 chr8 20697629 20698126 + 2 NA Intergenic Intergenic -82951 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 220-123 chr16 54021886 54022064 + 2 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -17418 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 168-79 chr4 31070522 31070666 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -100550 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 317-14 chr1 71211941 71212251 + 2 NA intron (NR_046217, intron 2 of 3) LTR89|LTR|ERVL? 130772 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 376-160 chr19 22468382 22468730 + 2 NA intron (NR_160728, intron 1 of 1) L1MB2|LINE|L1 -46210 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 424-147 chr2 196368603 196368839 + 2 NA intron (NM_020760, intron 2 of 28) L1M1|LINE|L1 -6544 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 384-39 chr10 61960195 61960474 + 2 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) 58635 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 507-100 chr16 68500357 68500695 + 2 NA Intergenic AluSg|SINE|Alu -38687 NM_001305204 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 329-410 chr4 62609947 62610118 + 2 NA Intergenic L1M4b|LINE|L1 -448267 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 389-320 chr6 91031387 91031681 + 2 NA Intergenic L2b|LINE|L2 -444462 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 241-54 chr10 119358962 119359123 + 2 NA intron (NM_005308, intron 2 of 15) MLT1B|LTR|ERVL-MaLR -18930 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 299-38 chr1 248275987 248276281 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -2320 NM_001004695 391195 Hs.553783 NM_001004695 ENSG00000177212 OR2T33 OR1-56|OR2T32 olfactory receptor family 2 subfamily T member 33 protein-coding 224-157 chr2 151715439 151715657 + 2 NA intron (NM_001271208, intron 10 of 182) MLT1A|LTR|ERVL-MaLR 18928 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 435-266 chr9 93982224 93982614 + 2 NA Intergenic L1PA16|LINE|L1 26585 NR_144455 101928040 Hs.375820 NR_144455 ENSG00000235601 BARX1-DT BARX1-AS1 BARX1 divergent transcript ncRNA 564-80 chr18 24339750 24340146 + 2 NA intron (NM_080597, intron 5 of 27) intron (NM_080597, intron 5 of 27) 18273 NR_031724 100302195 NR_031724 ENSG00000212051 MIR320C2 MIR320C-2|MIRN320C2|hsa-mir-320c-2|mir-320c-2 microRNA 320c-2 ncRNA 337-266 chr2 117267672 117267950 + 2 NA Intergenic Intergenic -546880 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 315-57 chr10 64798890 64799110 + 2 NA Intergenic L2a|LINE|L2 -26528 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 618-34 chr13 93850386 93850943 + 2 NA intron (NR_046536, intron 3 of 6) intron (NR_046536, intron 3 of 6) 7809 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 358-463 chr8 15936439 15936737 + 2 NA Intergenic Intergenic 249684 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 175-121 chr4 160921167 160921275 + 2 NA Intergenic L1MEd|LINE|L1 -1101512 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 538-80 chr16 52182516 52183012 + 2 NA Intergenic Intergenic -75800 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 552-26 chr10 116231724 116232269 + 2 NA intron (NM_005264, intron 4 of 10) intron (NM_005264, intron 4 of 10) 23799 NM_001348099 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 285-136 chr15 81983398 81983582 + 2 NA Intergenic L2b|LINE|L2 62528 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 402-272 chr5 73861727 73862092 + 2 NA intron (NM_001177693, intron 16 of 35) intron (NM_001177693, intron 16 of 35) 48363 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 243-125 chr14 59639652 59639843 + 2 NA intron (NM_021136, intron 3 of 8) L1MEg|LINE|L1 7273 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 179-55 chr2 230938725 230938862 + 2 NA Intergenic Intergenic -13551 NM_005683 9290 Hs.114545 NM_005683 ENSG00000135898 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 240-169 chr16 72773557 72773763 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -108690 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 266-303 chr4 113240167 113240337 + 2 NA intron (NM_001354275, intron 8 of 43) (ATAA)n|Simple_repeat|Simple_repeat -52587 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 336-115 chr12 1900726 1900933 + 2 NA intron (NM_172364, intron 6 of 37).2 L1MA3|LINE|L1 17823 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 350-489 chr7 95851476 95851664 + 2 NA intron (NM_004411, intron 5 of 16) L1MA8|LINE|L1 79064 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 668-75 chr4 115590703 115591284 + 2 NA Intergenic Intergenic -477373 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 627-117 chr8 90564965 90565353 + 2 NA Intergenic Intergenic 40904 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 426-243 chr5 102075636 102075877 + 2 NA Intergenic Intergenic 220528 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 307-158 chr15 58718712 58718906 + 2 NA intron (NM_001320570, intron 1 of 14) L1MEc|LINE|L1 -25202 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 361-3 chr1 34009679 34010012 + 2 NA intron (NM_052896, intron 3 of 69) L2a|LINE|L2 140889 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 314-321 chr2 212715049 212715249 + 2 NA Intergenic Intergenic -80182 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 273-256 chr20 15026191 15026456 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -96805 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 379-306 chr6 154038341 154038567 + 2 NA promoter-TSS (NM_001145283) promoter-TSS (NM_001145283) -648 NM_001008504 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 240-362 chr5 153940240 153940413 + 2 NA Intergenic MER4B|LTR|ERV1 -41339 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 374-320 chr5 121482238 121482537 + 2 NA Intergenic Intergenic 159837 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 538-48 chr12 14012777 14013159 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -32612 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 345-518 chr8 61111757 61111929 + 2 NA Intergenic L1M5|LINE|L1 -144095 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 604-49 chr14 87040184 87040600 + 2 NA Intergenic Intergenic 134614 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 335-377 chr4 26071437 26071717 + 2 NA Intergenic L1MC4|LINE|L1 157385 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 565-81 chr2 78294192 78294755 + 2 NA Intergenic Intergenic -3742 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 240-431 chr8 137588314 137588473 + 2 NA Intergenic LTR8A|LTR|ERV1 -174805 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 273-55 chr10 58988701 58988908 + 2 NA Intergenic Intergenic -10714 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 561-200 chr8 87005413 87005880 + 2 NA intron (NM_173538, intron 4 of 10) MER67D|LTR|ERV1 139231 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 289-258 chr20 5314466 5314692 + 2 NA intron (NM_144773, intron 1 of 2) intron (NM_144773, intron 1 of 2) 2153 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 548-64 chr13 96436937 96437325 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 9902 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 343-368 chr3 180062905 180063187 + 2 NA Intergenic MamGyp-int|LTR|Gypsy -26109 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 368-316 chr4 5642218 5642556 + 2 NA intron (NM_147127, intron 9 of 21) L1ME4a|LINE|L1 66172 NM_147127 132884 Hs.87306 NM_147127 ENSG00000173040 EVC2 LBN|WAD EvC ciliary complex subunit 2 protein-coding 314-240 chr18 28055833 28056114 + 2 NA intron (NM_001792, intron 2 of 15) MER57A-int|LTR|ERV1 -19332 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 468-160 chr2 149677781 149678095 + 2 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -90163 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 429-122 chr17 72223466 72223778 + 2 NA Intergenic Intergenic 102602 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 244-142 chr19 30900755 30900894 + 2 NA Intergenic MIR3|SINE|MIR -266686 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 289-262 chr20 20918513 20918727 + 2 NA Intergenic L1M4|LINE|L1 187738 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 452-177 chr3 189568671 189568982 + 2 NA Intergenic Intergenic -27920 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 367-104 chr12 131705514 131705714 + 2 NA Intergenic L1M2a|LINE|L1 -5476 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 335-204 chr18 3637205 3637409 + 2 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 33570 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 263-429 chr8 129395215 129395424 + 2 NA intron (NR_130918, intron 1 of 2) L1PA16|LINE|L1 88823 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 282-433 chr7 85923822 85923989 + 2 NA Intergenic L2|LINE|L2 502783 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 362-424 chr8 33049723 33049974 + 2 NA Intergenic L1MD1|LINE|L1 328013 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 553-12 chr1 213671857 213672260 + 2 NA Intergenic Intergenic -252691 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 314-150 chr13 70904017 70904300 + 2 NA Intergenic Intergenic -110983 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 375-28 chr1 224982390 224982599 + 2 NA intron (NM_001349911, intron 8 of 10) L1PB|LINE|L1 52819 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 193-157 chr4 86219656 86219785 + 2 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 99914 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 298-347 chr4 179453701 179453864 + 2 NA Intergenic L1M4c|LINE|L1 -1545846 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 354-309 chr3 178791211 178791485 + 2 NA intron (NR_126560, intron 2 of 7) L1M1|LINE|L1 69057 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 327-27 chr1 224338478 224338752 + 2 NA Intergenic MER51A|LTR|ERV1 -8426 NM_001243146 4931 Hs.497867 NM_002533 ENSG00000143748 NVL NVL2 nuclear VCP like protein-coding 300-202 chr2 103866247 103866503 + 2 NA Intergenic Intergenic 541957 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 155-35 chr12 59944102 59944241 + 2 NA Intergenic Intergenic 254801 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 283-62 chr10 81801266 81801439 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -73842 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 319-40 chr1 245961538 245961810 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 455738 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 860-45 chr8 118355229 118355773 + 2 NA intron (NM_001363274, intron 4 of 4) L1PB1|LINE|L1 -243682 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 210-126 chr2 55989066 55989202 + 2 NA promoter-TSS (NR_029629) promoter-TSS (NR_029629) -75 NR_029629 406998 NR_029629 ENSG00000207798 MIR216A MIR216|MIRN216|MIRN216A|miRNA216|mir-216|mir-216a microRNA 216a ncRNA 517-39 chr10 127865332 127865775 + 2 NA Intergenic MER21C|LTR|ERVL 27388 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 244-124 chr16 81657141 81657330 + 2 NA intron (NM_030629, intron 4 of 20) Charlie22a|DNA|hAT-Charlie -8119 NR_045112 100129617 Hs.657151 NR_045112 LOC100129617 - uncharacterized LOC100129617 ncRNA 312-352 chr3 189658780 189659085 + 2 NA intron (NM_003722, intron 1 of 13) L1MC3|LINE|L1 27543 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 330-522 chr8 91720285 91720478 + 2 NA Intergenic MER4D1|LTR|ERV1 297299 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 239-91 chr13 83227183 83227356 + 2 NA Intergenic Intergenic 655124 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 358-55 chr10 108890916 108891105 + 2 NA Intergenic HERVL-int|LTR|ERVL -821717 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 312-539 chr9 18341876 18342036 + 2 NA Intergenic Intergenic -132197 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 328-491 chr6 39602190 39602485 + 2 NA intron (NM_001289020, intron 6 of 21) intron (NM_001289020, intron 6 of 21) 123071 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 526-120 chr2 50925078 50925457 + 2 NA intron (NM_001330088, intron 2 of 17) intron (NM_001330088, intron 2 of 17) 106865 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 579 chr1 84807330 84807742 + 2 NA Intergenic LTR33B|LTR|ERVL 85670 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 319-570 chr9 24188632 24188913 + 2 NA Intergenic AluSx1|SINE|Alu -338171 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 234-339 chr6 53231797 53231996 + 2 NA Intergenic Intergenic -45097 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 282-421 chr7 39844258 39844426 + 2 NA Intergenic Intergenic 105077 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 292-44 chr10 60051569 60051800 + 2 NA intron (NM_001204403, intron 42 of 43) intron (NM_001204403, intron 42 of 43) 89332 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 559-99 chr2 134974857 134975299 + 2 NA intron (NM_001282883, intron 7 of 7) L1MA4A|LINE|L1 48571 NM_001321177 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 448-272 chr8 36742659 36742927 + 2 NA Intergenic Intergenic -41581 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 294-389 chr5 140089176 140089371 + 2 NA Intergenic Intergenic 18739 NR_102740 100505636 Hs.438871 NR_102739 ENSG00000245146 MALINC1 LINC01024|MA-linc1 mitosis associated long intergenic non-coding RNA 1 ncRNA 308-326 chr4 42765117 42765418 + 2 NA Intergenic Intergenic -108162 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 272-110 chr14 42547785 42548023 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 941048 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 291-424 chr7 146895909 146896116 + 2 NA intron (NM_014141, intron 2 of 22) intron (NM_014141, intron 2 of 22) 121741 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 223-141 chr2 14793121 14793299 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 160493 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 327-399 chr5 68722434 68722647 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 307387 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 465-184 chr3 124763917 124764302 + 2 NA intron (NM_001354766, intron 13 of 13) intron (NM_001354766, intron 13 of 13) 31670 NR_036088 100422864 NR_036088 ENSG00000265981 MIR544B - microRNA 544b ncRNA 291-471 chr8 128166976 128167151 + 2 NA Intergenic MIR3|SINE|MIR 16947 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 320-555 chr8 98784943 98785244 + 2 NA intron (NM_001256312, intron 3 of 12) L1PA15-16|LINE|L1 40578 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 311-362 chr4 5989552 5989752 + 2 NA exon (NM_001364690, exon 5 of 11) exon (NM_001364690, exon 5 of 11) 28894 NM_001364689 389197 Hs.479065 NM_207405 ENSG00000181215 C4orf50 - chromosome 4 open reading frame 50 protein-coding 270-151 chr17 34598866 34599119 + 2 NA intron (NM_001304438, intron 1 of 8) intron (NM_001304438, intron 1 of 8) 18243 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 342-523 chr8 111522618 111522824 + 2 NA Intergenic L1MA8|LINE|L1 146082 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 536-121 chr2 79636382 79636778 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 12779 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 229-386 chr8 76390514 76390702 + 2 NA Intergenic L2|LINE|L2 -16046 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 391-217 chr21 34067989 34068366 + 2 NA Intergenic Intergenic -5401 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 323-564 chr8 132248303 132248472 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -143122 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 348-284 chr3 5662357 5662670 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -412258 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 236-127 chr15 60159669 60159824 + 2 NA Intergenic L2a|LINE|L2 155435 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 393-309 chr6 101775541 101775858 + 2 NA intron (NM_001166247, intron 6 of 16) intron (NM_001166247, intron 6 of 16) 376714 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 305-127 chr12 74729716 74729927 + 2 NA Intergenic L1MA8|LINE|L1 191986 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 611-46 chr15 79577522 79577994 + 2 NA Intergenic L1MEc|LINE|L1 145242 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 382-405 chr8 81790389 81790628 + 2 NA Intergenic L1MA6|LINE|L1 51677 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 128-44 chr4 45778677 45778793 + 2 NA Intergenic Intergenic 345319 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 242-130 chr16 68623073 68623220 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -22164 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 185-122 chr20 41942464 41942581 + 2 NA Intergenic L2b|LINE|L2 -324145 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 255-214 chr2 181086361 181086506 + 2 NA Intergenic MIRb|SINE|MIR -37404 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 256-250 chr3 19524800 19525002 + 2 NA intron (NM_144633, intron 15 of 15) LTR33|LTR|ERVL -209970 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 305-113 chr12 21372535 21372766 + 2 NA promoter-TSS (NM_000415) promoter-TSS (NM_000415) -252 NM_000415 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 333-75 chr11 4928455 4928698 + 2 NA Intergenic Intergenic -4237 NM_001005237 79324 Hs.554541 NM_001005237 ENSG00000278870 OR51G1 OR11-29|OR51G3P olfactory receptor family 51 subfamily G member 1 (gene/pseudogene) protein-coding 318-186 chr15 87916024 87916227 + 2 NA TTS (NM_001320135) TTS (NM_001320135) 30143 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 215-278 chr6 55895900 55896090 + 2 NA Intergenic Intergenic -20405 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 340-324 chr20 53016214 53016549 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 44023 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 278-402 chr7 95029849 95030062 + 2 NA intron (NM_017650, intron 2 of 15) intron (NM_017650, intron 2 of 15) 120057 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 356-245 chr2 76383654 76383894 + 2 NA Intergenic Intergenic -602191 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 471-240 chr6 149139639 149140009 + 2 NA Intergenic Intergenic -78100 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 631-83 chr3 77957132 77957741 + 2 NA Intergenic Intergenic 91527 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 391-110 chr14 68680232 68680447 + 2 NA intron (NM_001321818, intron 10 of 10) MER63C|DNA|hAT-Blackjack -51552 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 444-230 chr6 165601842 165602128 + 2 NA intron (NM_006661, intron 1 of 22) intron (NM_006661, intron 1 of 22) 60115 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 245-181 chr2 27496270 27496505 + 2 NA promoter-TSS (NM_001486) promoter-TSS (NM_001486) -452 NM_001486 2646 Hs.89771 NM_001486 ENSG00000084734 GCKR FGQTL5|GKRP glucokinase regulator protein-coding 229-199 chr2 137388296 137388477 + 2 NA intron (NM_001316349, intron 12 of 27) L1MA4A|LINE|L1 539546 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 370-285 chr21 29279177 29279422 + 2 NA intron (NR_027072, intron 1 of 1) L1ME2|LINE|L1 -19623 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 265-404 chr8 135243151 135243313 + 2 NA intron (NR_120396, intron 1 of 4) L1M5|LINE|L1 9101 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 364-206 chr2 71855671 71855856 + 2 NA Intergenic Intergenic 292099 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 386-35 chr10 49141711 49141936 + 2 NA intron (NR_038973, intron 3 of 5) MER63D|DNA|hAT-Blackjack -7803 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 408-89 chr12 106218178 106218439 + 2 NA Intergenic L1MEc|LINE|L1 29712 NM_006825 10970 Hs.74368 NM_006825 ENSG00000136026 CKAP4 CLIMP-63|ERGIC-63|p63 cytoskeleton associated protein 4 protein-coding 206-186 chr4 90090609 90090800 + 2 NA Intergenic Intergenic -36829 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 280-225 chr2 213334077 213334340 + 2 NA intron (NR_047660, intron 4 of 14) L1MA2|LINE|L1 49744 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 392-145 chr2 57601635 57601896 + 2 NA Intergenic Intergenic -305886 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 123-4 chr10 28733725 28733833 + 2 NA Intergenic L1P1|LINE|L1 -9871 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 345-554 chr9 69356646 69356837 + 2 NA intron (NM_001127608, intron 2 of 10) intron (NM_001127608, intron 2 of 10) 27416 NM_004816 9413 Hs.118003 NM_004816 ENSG00000135063 FAM189A2 C9orf61|X123 family with sequence similarity 189 member A2 protein-coding 402-223 chr3 191431624 191431945 + 2 NA intron (NR_120606, intron 1 of 6) (TATTATA)n|Simple_repeat|Simple_repeat 6260 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 453-3 chr1 30276622 30277067 + 2 NA Intergenic MIRb|SINE|MIR -239232 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 281-377 chr5 158895162 158895343 + 2 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 202704 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 235-326 chr7 46238583 46238755 + 2 NA Intergenic L1MD1|LINE|L1 -317397 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 383-374 chr8 67877045 67877250 + 2 NA Intergenic L1PA17|LINE|L1 -74899 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 474-193 chr3 194508699 194509138 + 2 NA Intergenic Intergenic 21778 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 502-232 chr6 53339637 53339997 + 2 NA intron (NM_001242830, intron 1 of 6) Tigger3b|DNA|TcMar-Tigger -2200 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 252-434 chr8 117022354 117022530 + 2 NA intron (NM_001172813, intron 2 of 10) intron (NM_001172813, intron 2 of 10) 71467 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 487-240 chr5 146762191 146762484 + 2 NA intron (NM_001271899, intron 2 of 9) MIRb|SINE|MIR 116448 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 427-198 chr5 12630809 12631211 + 2 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) -36849 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 165-100 chr5 108430143 108430268 + 2 NA Intergenic Intergenic -48107 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 317-140 chr14 46736484 46736741 + 2 NA Intergenic L1PA13|LINE|L1 -84831 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 312-376 chr4 77121977 77122210 + 2 NA Intergenic LTR1C1|LTR|ERV1 -35114 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 411-278 chr7 119873833 119874180 + 2 NA intron (NR_131960, intron 1 of 4) L2c|LINE|L2 33369 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 827-46 chr5 171758714 171759280 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -26875 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 308-444 chr7 259001 259277 + 2 NA intron (NM_020223, intron 9 of 9) intron (NM_020223, intron 9 of 9) 66568 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 314-287 chr2 77971360 77971576 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -16442 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 545-207 chr6 121131857 121132189 + 2 NA intron (NM_001367759, intron 26 of 33) intron (NM_001367759, intron 26 of 33) 202457 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 633-73 chr21 23093368 23093828 + 2 NA Intergenic Intergenic 14314 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 417-100 chr16 13475102 13475394 + 2 NA Intergenic L2a|LINE|L2 -444909 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 195-142 chr3 60206200 60206368 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -125375 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 251-24 chr1 237705653 237705852 + 2 NA intron (NM_001035, intron 67 of 104) L2|LINE|L2 -156423 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 561-155 chr5 20058085 20058541 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -70113 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 351-228 chr2 117166515 117166736 + 2 NA Intergenic Intergenic -648066 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 321-324 chr20 1521239 1521499 + 2 NA Intergenic Intergenic -29949 NM_001134836 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 352-325 chr3 94938936 94939251 + 2 NA intron (NR_015400, intron 1 of 7) intron (NR_015400, intron 1 of 7) 830 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 441-25 chr10 52060732 52060969 + 2 NA intron (NM_001098512, intron 6 of 17) L1ME3D|LINE|L1 253278 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 267-332 chr5 66646782 66647015 + 2 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) 50505 NM_198828 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 347-508 chr8 79003081 79003302 + 2 NA Intergenic L1ME3F|LINE|L1 165662 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 658-92 chr4 99930126 99930617 + 2 NA intron (NM_001278311, intron 2 of 3) intron (NM_001278311, intron 2 of 3) 16247 NM_001278311 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 346-408 chr5 154826703 154826961 + 2 NA intron (NM_032385, intron 5 of 8) L1MC4|LINE|L1 -2626 NR_039667 100616306 NR_039667 ENSG00000263361 MIR378H - microRNA 378h ncRNA 345-127 chr12 126791612 126791920 + 2 NA Intergenic Intergenic -19504 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 265-74 chr12 27984688 27984936 + 2 NA Intergenic Intergenic -12079 NM_198965 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 449-129 chr2 123475857 123476278 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -402586 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 295-91 chr12 15135836 15135996 + 2 NA intron (NM_032918, intron 2 of 4) L1MC1|LINE|L1 -16007 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 482-263 chr8 36622451 36622783 + 2 NA Intergenic Intergenic -161757 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 529-203 chr7 51131175 51131571 + 2 NA intron (NM_015198, intron 6 of 12) intron (NM_015198, intron 6 of 12) 185436 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 497-308 chrX 58335420 58335770 + 2 NA Intergenic ALR/Alpha|Satellite|centr -424962 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 282-59 chr10 123483973 123484208 + 2 NA Intergenic LTR103_Mam|LTR|ERV1? -182265 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 180-123 chr4 189330962 189331080 + 2 NA Intergenic Intergenic -328585 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 385-174 chr2 66102687 66102999 + 2 NA Intergenic Intergenic 255485 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 297-382 chr5 148858270 148858535 + 2 NA Intergenic Intergenic 31809 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 296-501 chr9 137375561 137375801 + 2 NA intron (NR_104598, intron 5 of 10) intron (NR_104598, intron 5 of 10) 47481 NR_104598 54932 Hs.495553 NM_017820 ENSG00000187609 EXD3 mut-7 exonuclease 3'-5' domain containing 3 protein-coding 256-215 chr2 134884195 134884414 + 2 NA intron (NR_036549, intron 1 of 4) intron (NR_036549, intron 1 of 4) 26484 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 319-531 chr8 79429273 79429564 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 97230 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 200-31 chr10 35235117 35235231 + 2 NA Intergenic LTR49-int|LTR|ERV1 -11851 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 247-55 chr11 25872918 25873123 + 2 NA Intergenic Intergenic -316103 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 341-324 chr3 18095218 18095392 + 2 NA intron (NR_161333, intron 4 of 4) HAL1|LINE|L1 132753 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 191-77 chr17 60306878 60307007 + 2 NA intron (NM_032582, intron 2 of 33) L1MA4|LINE|L1 -75297 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 369-145 chr16 10995159 10995454 + 2 NA intron (NM_015226, intron 9 of 22) MIR|SINE|MIR 50742 NM_015226 23274 Hs.35490 NM_015226 ENSG00000038532 CLEC16A Gop-1|KIAA0350 C-type lectin domain containing 16A protein-coding 302-47 chr10 50272988 50273146 + 2 NA Intergenic Intergenic -24457 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 304-193 chr17 51726216 51726429 + 2 NA intron (NM_001082533, intron 5 of 9) L1MA8|LINE|L1 290895 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 311-231 chr19 51832682 51832867 + 2 NA intron (NR_163433, intron 9 of 11) L1MEc|LINE|L1 37617 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 230-260 chr4 43845617 43845744 + 2 NA Intergenic Intergenic -171181 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 307-306 chr3 76890927 76891143 + 2 NA Intergenic L1M5|LINE|L1 -149064 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 297-43 chr10 19549281 19549452 + 2 NA intron (NM_001142308, intron 32 of 39) Tigger1|DNA|TcMar-Tigger 179184 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 363-378 chr5 157974867 157975062 + 2 NA Intergenic Intergenic -115819 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 335-283 chr2 223506080 223506368 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 96137 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 215-9 chr1 118868036 118868212 + 2 NA Intergenic L3|LINE|CR1 120219 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 235-360 chr8 101741395 101741578 + 2 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 49483 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 794-30 chr3 90674423 90675141 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1567161 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 203-151 chr3 89420871 89421019 + 2 NA intron (NM_005233, intron 11 of 16) MIRb|SINE|MIR 313324 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 414-349 chr9 30567303 30567639 + 2 NA Intergenic L1MEd|LINE|L1 -159017 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 330-152 chr14 48252144 48252357 + 2 NA Intergenic Intergenic -457236 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 519-252 chr9 79995978 79996351 + 2 NA intron (NR_121212, intron 3 of 4) MIR3|SINE|MIR 21141 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 243-213 chr2 82406426 82406664 + 2 NA Intergenic Intergenic -450258 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 380-16 chr1 107114143 107114371 + 2 NA Intergenic Intergenic -25831 NM_014917 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 390-318 chr6 46186441 46186737 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -15579 NM_021572 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 314-316 chr2 190860789 190861017 + 2 NA Intergenic Intergenic -19918 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 340-400 chr4 60542487 60542659 + 2 NA Intergenic Intergenic -380046 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 210-43 chr11 58061211 58061364 + 2 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) 30334 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 162-54 chr2 45517817 45517918 + 2 NA intron (NM_018079, intron 14 of 20) AluJo|SINE|Alu 93400 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 497-246 chr6 50806807 50807255 + 2 NA Intergenic Intergenic -11840 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 448-38 chr10 70660952 70661207 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -11427 NM_080722 140766 Hs.352156 NM_080722 ENSG00000138316 ADAMTS14 - ADAM metallopeptidase with thrombospondin type 1 motif 14 protein-coding 361-279 chr3 46045546 46045849 + 2 NA Intergenic L1PB4|LINE|L1 -18214 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 320-198 chr17 5651404 5651652 + 2 NA Intergenic LTR26|LTR|ERV1 -67019 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 321-302 chr2 152789215 152789431 + 2 NA Intergenic Intergenic 70686 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 278-357 chr5 161781267 161781532 + 2 NA Intergenic L1MEc|LINE|L1 -65792 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 311-342 chr3 55060420 55060660 + 2 NA intron (NM_018398, intron 35 of 37) MIR|SINE|MIR -93438 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 306-465 chr7 37490563 37490797 + 2 NA Intergenic MIR|SINE|MIR -41354 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 127-50 chr2 180763150 180763249 + 2 NA intron (NR_104324, intron 3 of 4) intron (NR_104324, intron 3 of 4) 71095 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 301-415 chr7 18604699 18604865 + 2 NA intron (NM_001321893, intron 7 of 11) L1MC2|LINE|L1 95512 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 188-12 chr1 192995102 192995229 + 2 NA Intergenic Intergenic -46908 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 585-98 chr3 28428627 28429174 + 2 NA intron (NM_001040432, intron 3 of 9) THE1C|LTR|ERVL-MaLR 79751 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 315-512 chr9 78286721 78286899 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -10315 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 264-185 chr19 31189760 31189962 + 2 NA intron (NR_147209, intron 2 of 4) L1ME2z|LINE|L1 22351 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 207-294 chr8 88667934 88668096 + 2 NA Intergenic Intergenic -340532 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 339-231 chr18 71731785 71731981 + 2 NA TTS (NR_126324) TTS (NR_126324) 50343 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 158-80 chr3 178480780 178480930 + 2 NA Intergenic Intergenic -55581 NM_181361 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 221-114 chr18 717364 717533 + 2 NA Intergenic AluJb|SINE|Alu -4784 NR_148712 55556 Hs.658550 NM_017512 ENSG00000132199 ENOSF1 FUCD|RTS|TYMSAS enolase superfamily member 1 protein-coding 322-222 chr18 65661688 65661939 + 2 NA Intergenic Intergenic -88439 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 177-70 chr2 49901152 49901240 + 2 NA Intergenic Intergenic 73007 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 189-14 chr10 28604014 28604131 + 2 NA intron (NM_100264, intron 7 of 13) intron (NM_100264, intron 7 of 13) 70954 NM_100486 51322 Hs.743224 NM_016628 ENSG00000095787 WAC BM-016|DESSH|PRO1741|Wwp4 WW domain containing adaptor with coiled-coil protein-coding 350-269 chr20 20438655 20438951 + 2 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 70699 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 231-14 chr1 96262961 96263171 + 2 NA intron (NR_110693, intron 5 of 5) L1MEc|LINE|L1 111059 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 472-106 chr15 91807943 91808303 + 2 NA Intergenic Intergenic -45585 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 344-211 chr19 37614648 37614940 + 2 NA TTS (NM_001172226) TTS (NM_001172226) 19918 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 312-564 chrX 97689787 97690002 + 2 NA Intergenic HAL1|LINE|L1 -125359 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 577-51 chr12 91902321 91902825 + 2 NA Intergenic Intergenic 239140 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 413-149 chr2 131010205 131010554 + 2 NA intron (NM_001367493, intron 4 of 13) L1MEf|LINE|L1 82783 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 301-235 chr2 187717902 187718168 + 2 NA Intergenic L1MCb|LINE|L1 -163530 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 579-34 chr14 24525574 24525967 + 2 NA Intergenic L1MEg|LINE|L1 -17505 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 407-99 chr16 50215654 50215982 + 2 NA intron (NM_001365324, intron 3 of 11) intron (NM_001365324, intron 3 of 11) -50733 NM_001286057 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 290-204 chr2 42722022 42722232 + 2 NA intron (NM_001330443, intron 15 of 16) intron (NM_001330443, intron 15 of 16) 42134 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 274-7 chr1 82462568 82462744 + 2 NA Intergenic Intergenic -440527 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 460-170 chr20 12727491 12727863 + 2 NA Intergenic L2a|LINE|L2 209286 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 402-297 chr6 63036849 63037130 + 2 NA Intergenic Intergenic 282988 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 385-139 chr17 76709681 76709979 + 2 NA promoter-TSS (NR_130926) promoter-TSS (NR_130926) -233 NR_130926 439921 Hs.250723 NM_198530 ENSG00000182534 MXRA7 - matrix remodeling associated 7 protein-coding 417-168 chr21 29252880 29253149 + 2 NA intron (NR_027072, intron 1 of 1) THE1A-int|LTR|ERVL-MaLR -45908 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 323-177 chr16 57929868 57930039 + 2 NA intron (NM_001297, intron 17 of 32) L1MB1|LINE|L1 41175 NM_001297 1258 Hs.147062 NM_001297 ENSG00000070729 CNGB1 CNCG2|CNCG3L|CNCG4|CNG4|CNGB1B|GAR1|GARP|GARP2|RCNC2|RCNCb|RCNCbeta|RP45 cyclic nucleotide gated channel beta 1 protein-coding 539-141 chr3 54521050 54521414 + 2 NA intron (NM_018398, intron 5 of 37) L1MB8|LINE|L1 118625 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 388-126 chr16 78252560 78252835 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 153043 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 409-175 chr20 39328038 39328366 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -103454 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 320-151 chr14 55821717 55821988 + 2 NA Intergenic LTR41|LTR|ERVL -25178 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 120-35 chr4 33101248 33101360 + 2 NA Intergenic Intergenic 750266 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 345-37 chr1 210236275 210236578 + 2 NA intron (NM_001354173, intron 1 of 4).2 intron (NM_001354173, intron 1 of 4).2 -2541 NR_024337 574036 Hs.446946 NR_024337 ENSG00000203706 SERTAD4-AS1 C1orf133 SERTAD4 antisense RNA 1 ncRNA 500-4 chr1 68541652 68541986 + 2 NA Intergenic Intergenic -44737 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 247-164 chr18 7254013 7254185 + 2 NA Intergenic Intergenic 22995 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 282-314 chr3 180545207 180545437 + 2 NA Intergenic L1PA16|LINE|L1 -56841 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 254-423 chr8 118411361 118411552 + 2 NA intron (NM_001349811, intron 3 of 4) MLT1H1-int|LTR|ERVL-MaLR -209545 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 275-390 chr9 133172349 133172510 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -8515 NM_001282629 26301 Hs.495419 NM_021996 ENSG00000148288 GBGT1 A3GALNT|FS|UNQ2513 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) protein-coding 516-176 chr3 86500392 86500739 + 2 NA Intergenic Intergenic 18622 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 172-141 chr8 128533857 128533967 + 2 NA intron (NR_121672, intron 2 of 7) Tigger3b|DNA|TcMar-Tigger 30767 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 328-582 chr8 129158543 129158861 + 2 NA Intergenic L1M6|LINE|L1 82538 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 518-117 chr19 16967917 16968292 + 2 NA intron (NM_015692, intron 18 of 41) intron (NM_015692, intron 18 of 41) 58706 NM_015692 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 473-105 chr16 79590393 79590794 + 2 NA Intergenic Intergenic 10144 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 528-86 chr14 81605414 81605797 + 2 NA intron (NR_110074, intron 2 of 2) MIRb|SINE|MIR 17456 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 527-37 chr10 78601134 78601635 + 2 NA Intergenic L2a|LINE|L2 334042 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 410-64 chr12 15729530 15729789 + 2 NA intron (NM_004447, intron 1 of 20) L1MD|LINE|L1 59729 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 200-172 chr3 43796473 43796582 + 2 NA Intergenic Intergenic -104933 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 327-182 chr16 19768041 19768311 + 2 NA intron (NM_001305122, intron 7 of 8) MIRb|SINE|MIR -49949 NM_001348533 400506 Hs.585209 NM_001012991 ENSG00000103550 KNOP1 101F10.1|C16orf88|FAM191A|TSG118 lysine rich nucleolar protein 1 protein-coding 357-302 chr4 24157266 24157493 + 2 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) -267332 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 317-262 chr2 199149624 199149939 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 308158 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 414-247 chr4 125554488 125554808 + 2 NA Intergenic Intergenic 47389 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 356-277 chr2 225402154 225402440 + 2 NA intron (NM_001371273, intron 2 of 7) intron (NM_001371273, intron 2 of 7) 1411 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 400-185 chr2 197990508 197990852 + 2 NA intron (NM_006226, intron 1 of 5) THE1B|LTR|ERVL-MaLR 186087 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 236-311 chr6 121773455 121773620 + 2 NA Intergenic Intergenic 337891 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 486-13 chr1 172636722 172637119 + 2 NA Intergenic Intergenic -22088 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 274-13 chr1 115001989 115002214 + 2 NA Intergenic Intergenic -27723 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 266-201 chr2 168487027 168487227 + 2 NA intron (NM_001256126, intron 1 of 10) MIRc|SINE|MIR 30855 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 339-168 chr14 88726326 88726525 + 2 NA intron (NM_183387, intron 8 of 42) intron (NM_183387, intron 8 of 42) 66528 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 469-42 chr10 96809711 96810055 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 18881 NR_030338 693192 NR_030338 ENSG00000207976 MIR607 MIRN607|hsa-mir-607 microRNA 607 ncRNA 552-166 chr5 8494365 8494773 + 2 NA Intergenic L2c|LINE|L2 33644 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 373-444 chrX 99031087 99031424 + 2 NA Intergenic Intergenic 1379018 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 335-60 chr10 64142881 64143070 + 2 NA Intergenic Intergenic -621085 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 208-64 chr12 100802956 100803108 + 2 NA intron (NM_001286615, intron 1 of 27) intron (NM_001286615, intron 1 of 27) 8256 NM_178826 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 304-333 chr3 50703618 50703794 + 2 NA intron (NM_004947, intron 1 of 52) L1MA4|LINE|L1 28626 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 117-11 chr14 60670619 60670721 + 2 NA Intergenic L1MEc|LINE|L1 -21193 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 384-161 chr2 35385481 35385858 + 2 NA Intergenic L1MEg2|LINE|L1 -85736 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 507-170 chr3 160878059 160878555 + 2 NA intron (NR_134243, intron 1 of 5) MLT1A|LTR|ERVL-MaLR 7709 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 272-461 chr8 123556208 123556442 + 2 NA Intergenic Intergenic -15119 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 382-396 chr7 146789352 146789636 + 2 NA intron (NM_014141, intron 1 of 22) intron (NM_014141, intron 1 of 22) 15223 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 180-176 chr8 120894758 120894909 + 2 NA Intergenic L1M4|LINE|L1 -82787 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 238-396 chr8 127486997 127487224 + 2 NA Intergenic L1MDa|LINE|L1 -4971 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 403-336 chrX 83178149 83178544 + 2 NA Intergenic MLT2A1|LTR|ERVL -329944 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 691-2 chr1 66025666 66026150 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 24810 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 485-257 chr7 3034692 3035036 + 2 NA intron (NM_001324281, intron 1 of 25) intron (NM_001324281, intron 1 of 25) 9003 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 283-106 chr12 72174640 72174869 + 2 NA Intergenic L1MC4|LINE|L1 -97995 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 176-93 chr3 187433428 187433602 + 2 NA Intergenic L1M5|LINE|L1 -13531 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 315-323 chr3 180068454 180068623 + 2 NA Intergenic L1MEc|LINE|L1 -31601 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 378-184 chr18 1105525 1105822 + 2 NA Intergenic Intergenic -177680 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 236-27 chr1 200430110 200430239 + 2 NA Intergenic Intergenic -20138 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 421-295 chr8 77289925 77290188 + 2 NA Intergenic Intergenic -160641 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 275-375 chr8 140320713 140320969 + 2 NA intron (NM_001160372, intron 9 of 22) MIRc|SINE|MIR 136903 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 415-309 chrX 43764777 43765114 + 2 NA Intergenic LTR78|LTR|ERV1 110038 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 335-449 chr5 165538996 165539191 + 2 NA Intergenic L1M5|LINE|L1 1068814 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 279-70 chr11 74360259 74360466 + 2 NA intron (NM_173582, intron 5 of 13) 7SLRNA|srpRNA|srpRNA 38071 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 244-156 chr2 54736951 54737157 + 2 NA intron (NM_001039753, intron 1 of 40) L1MC4|LINE|L1 12042 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 341-351 chr3 155246669 155246969 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 5874 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 154-18 chr11 79053016 79053156 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 349023 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 374-11 chr1 153671146 153671469 + 2 NA promoter-TSS (NM_001267809) promoter-TSS (NM_001267809) -279 NM_001267809 3608 Hs.75117 NM_004515 ENSG00000143621 ILF2 NF45|PRO3063 interleukin enhancer binding factor 2 protein-coding 226-162 chr2 64143067 64143278 + 2 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 1248 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 305-391 chr4 63813623 63813806 + 2 NA Intergenic L1PA13|LINE|L1 595736 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 227-271 chr5 3016970 3017170 + 2 NA Intergenic AluSg|SINE|Alu 99216 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 338-450 chr5 132795362 132795665 + 2 NA Intergenic L1MC5|LINE|L1 -17644 NM_001098813 23176 Hs.522057 NM_015146 ENSG00000164402 SEPTIN8 SEP2|SEPT8 septin 8 protein-coding 270-320 chr5 144721036 144721247 + 2 NA Intergenic Intergenic 515750 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 405-247 chr5 53012437 53012778 + 2 NA intron (NR_073107, intron 1 of 28) L1PA13|LINE|L1 23255 NR_073107 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 398-143 chr19 20101305 20101604 + 2 NA intron (NM_007138, intron 1 of 3) LTR17|LTR|ERV1 23454 NM_007138 7643 Hs.55304 NM_007138 ENSG00000213988 ZNF90 HTF9 zinc finger protein 90 protein-coding 352-427 chr5 111613057 111613258 + 2 NA intron (NR_040093, intron 1 of 6) L1PA16|LINE|L1 -100560 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 309-450 chr5 105335810 105336079 + 2 NA Intergenic L1M3c|LINE|L1 236470 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 308-188 chr17 67406370 67406580 + 2 NA intron (NM_181671, intron 1 of 9) L1MB5|LINE|L1 29194 NM_012417 26207 Hs.591185 NM_012417 ENSG00000154217 PITPNC1 M-RDGB-beta|MRDGBbeta|RDGB-BETA|RDGBB|RDGBB1 phosphatidylinositol transfer protein cytoplasmic 1 protein-coding 227-194 chr2 193993795 193993937 + 2 NA Intergenic Intergenic -350403 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 408-247 chr4 108986716 108987071 + 2 NA intron (NM_198721, intron 5 of 36) L1MC5a|LINE|L1 -223840 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 410-256 chr5 168390167 168390486 + 2 NA intron (NM_001161661, intron 3 of 22) intron (NM_001161661, intron 3 of 22) -96145 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 631-25 chr11 29660897 29661318 + 2 NA Intergenic Intergenic 42305 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 606-29 chr11 40113248 40113697 + 2 NA TTS (NR_047673) TTS (NR_047673) 179658 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 806-26 chr17 77975591 77976184 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie -28350 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 280-143 chr15 94988903 94989084 + 2 NA Intergenic L1MD1|LINE|L1 133630 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 339-338 chr22 28471440 28471618 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 11660 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 357-264 chr3 38416393 38416685 + 2 NA intron (NR_146068, intron 15 of 16) L1MC4|LINE|L1 -37351 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 199-56 chr14 48233804 48233965 + 2 NA Intergenic L1MB1|LINE|L1 -438870 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 413-25 chr1 222845648 222846031 + 2 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 30800 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 427-194 chr4 138528605 138528915 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 219049 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 403-247 chr5 45565818 45566073 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 130435 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 206-181 chr4 65257973 65258154 + 2 NA Intergenic Intergenic -253563 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 601-48 chr16 49163247 49163715 + 2 NA Intergenic Intergenic 118357 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 218-303 chr7 39438642 39438785 + 2 NA intron (NM_001370959, intron 7 of 9) L1PA8A|LINE|L1 -32367 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 338-143 chr12 131388135 131388319 + 2 NA Intergenic Intergenic 40757 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 259-29 chr1 233495242 233495483 + 2 NA Intergenic Intergenic -118744 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 365-363 chr6 161123916 161124196 + 2 NA Intergenic L1PB1|LINE|L1 37926 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 307-477 chr8 71137519 71137785 + 2 NA Intergenic Intergenic 219054 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 242-260 chr4 61027376 61027541 + 2 NA Intergenic L1ME2|LINE|L1 104839 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 301-208 chr2 77909545 77909822 + 2 NA intron (NR_110288, intron 1 of 3) AluJo|SINE|Alu -6251 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 525-194 chr5 28487433 28487851 + 2 NA Intergenic Intergenic -199977 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 505-232 chr5 3011765 3012141 + 2 NA Intergenic Intergenic 94099 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 265-326 chr5 175042180 175042393 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -46555 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 319-157 chr14 102107764 102108047 + 2 NA intron (NM_001017963, intron 1 of 11) intron (NM_001017963, intron 1 of 11) -20861 NM_005348 3320 Hs.525600 NM_005348 ENSG00000080824 HSP90AA1 EL52|HEL-S-65p|HSP86|HSP89A|HSP90A|HSP90N|HSPC1|HSPCA|HSPCAL1|HSPCAL4|HSPN|Hsp103|Hsp89|Hsp90|LAP-2|LAP2 heat shock protein 90 alpha family class A member 1 protein-coding 501-79 chr17 28297338 28297623 + 2 NA intron (NR_028334, intron 2 of 2) intron (NR_028334, intron 2 of 2) 9902 NR_028334 284085 Hs.371796 NM_173624 ENSG00000265480 KRT18P55 - keratin 18 pseudogene 55 pseudo 224-9 chr1 59204751 59204967 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -58052 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 298-222 chr2 100071477 100071764 + 2 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 33963 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 284-389 chr7 119969353 119969588 + 2 NA Intergenic MIRb|SINE|MIR -62095 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 300-476 chr8 110556352 110556641 + 2 NA Intergenic Intergenic 470937 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 502-11 chr1 107713101 107713438 + 2 NA intron (NM_006113, intron 15 of 26) intron (NM_006113, intron 15 of 26) -24770 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 253-295 chr4 54079393 54079542 + 2 NA Intergenic L1MA10|LINE|L1 -14862 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 272-457 chr8 115308578 115308762 + 2 NA Intergenic Intergenic 359343 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 221-139 chr2 70547787 70547991 + 2 NA intron (NM_003236, intron 1 of 5) (AT)n|Simple_repeat|Simple_repeat 5557 NM_001308158 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 442-229 chr5 35205676 35206106 + 2 NA intron (NM_000949, intron 1 of 9) L1M6|LINE|L1 24596 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 369-336 chr5 114937902 114938154 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -164615 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 335-434 chr5 115749985 115750313 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 66508 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 270-338 chr6 127234718 127234931 + 2 NA Intergenic MIR3|SINE|MIR -31858 NM_001242851 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 338-379 chr4 53006691 53006982 + 2 NA intron (NM_152540, intron 5 of 8) MER102a|DNA|hAT-Charlie 144519 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 525-149 chr21 35303428 35303769 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -254300 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 333-332 chr22 35088342 35088541 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie 22283 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 353-253 chr2 123408616 123408808 + 2 NA Intergenic L1MD1|LINE|L1 -335231 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 641-17 chr11 19100864 19101390 + 2 NA Intergenic Intergenic -16018 NM_001001483 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 238-113 chr15 27735685 27735846 + 2 NA Intergenic L1M1|LINE|L1 363550 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 621-104 chr5 159531539 159532061 + 2 NA Intergenic L1MC5|LINE|L1 -65524 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 524-211 chr5 163950792 163951270 + 2 NA Intergenic Intergenic 445412 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 467-281 chr8 87529266 87529617 + 2 NA Intergenic Intergenic 344574 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 264-317 chr5 29731847 29732064 + 2 NA Intergenic Intergenic -148605 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 248-103 chr13 103298697 103298888 + 2 NA Intergenic Intergenic -126408 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 522-165 chr22 43717411 43717855 + 2 NA intron (NM_198856, intron 6 of 29) L1MC4a|LINE|L1 94672 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 151-72 chr6 144182667 144182803 + 2 NA intron (NM_003764, intron 1 of 1) intron (NM_003764, intron 1 of 1) 32218 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 287-426 chr9 1576770 1576953 + 2 NA Intergenic Intergenic -438486 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 391-89 chr13 88680381 88680739 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 53707 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 227-27 chr1 245106368 245106554 + 2 NA intron (NM_001143943, intron 6 of 6) intron (NM_001143943, intron 6 of 6) -48524 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 303-144 chr15 78224196 78224475 + 2 NA intron (NM_015162, intron 1 of 13) MLT1F1|LTR|ERVL-MaLR 10230 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 208-191 chr4 95809556 95809699 + 2 NA Intergenic MIRb|SINE|MIR -30466 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 467-285 chr8 119621103 119621498 + 2 NA intron (NM_001330600, intron 4 of 25) intron (NM_001330600, intron 4 of 25) 17539 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 488-170 chr3 37157541 37157999 + 2 NA intron (NM_001348298, intron 2 of 21) intron (NM_001348298, intron 2 of 21) 16812 NM_006309 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 537-205 chr5 175629311 175629666 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -28583 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 379-140 chr19 37148531 37148854 + 2 NA 3' UTR (NM_152655, exon 6 of 6) 3' UTR (NM_152655, exon 6 of 6) 23744 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 377-268 chr3 95194664 95195030 + 2 NA Intergenic Intergenic 256584 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 173-99 chr4 30410595 30410692 + 2 NA Intergenic L1MC4a|LINE|L1 -309726 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 328-367 chr3 137410191 137410444 + 2 NA Intergenic Intergenic -353998 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 256-309 chr5 18403688 18403911 + 2 NA Intergenic L1PA16|LINE|L1 596525 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 187-74 chr19 11803479 11803620 + 2 NA intron (NM_152356, intron 1 of 2) L1MD3|LINE|L1 5026 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 233-369 chr8 69532758 69532950 + 2 NA intron (NR_156414, intron 2 of 20) L1MB2|LINE|L1 40007 NR_156415 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 284-200 chr2 78733902 78734051 + 2 NA Intergenic Intergenic 188445 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 361-473 chr9 25895626 25895933 + 2 NA Intergenic AluSq2|SINE|Alu 115723 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 279-357 chr6 39673595 39673854 + 2 NA intron (NM_001289020, intron 3 of 21) L2b|LINE|L2 51684 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 279-444 chr9 102978235 102978437 + 2 NA Intergenic Intergenic -16997 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 230-176 chr2 104692772 104692952 + 2 NA Intergenic MIR|SINE|MIR 64857 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 239-331 chr5 133662919 133663134 + 2 NA Intergenic L1MD2|LINE|L1 -50485 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 321-294 chr2 120668079 120668292 + 2 NA Intergenic Intergenic -67683 NM_001371271 528-237 chr7 52707674 52708188 + 2 NA Intergenic Intergenic -327702 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 308-312 chr3 190916864 190917052 + 2 NA Intergenic L1PA15|LINE|L1 39028 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 306-377 chr5 5962374 5962561 + 2 NA Intergenic L1M5|LINE|L1 374825 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 203-28 chr10 69302269 69302381 + 2 NA intron (NM_033500, intron 5 of 21) L1M4|LINE|L1 -13529 NM_033496 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 453-126 chr2 129328895 129329338 + 2 NA Intergenic L1MA8|LINE|L1 -55225 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 872-34 chr4 42890615 42891197 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -2360 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 266-96 chr12 118818769 118818962 + 2 NA TTS (NR_134997) TTS (NR_134997) 14671 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 381-273 chr4 67105051 67105380 + 2 NA Intergenic Intergenic 316785 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 361-101 chr12 38498022 38498269 + 2 NA Intergenic L1PA16|LINE|L1 181371 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 969-16 chr3 26834788 26835500 + 2 NA Intergenic Intergenic 140587 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 425-282 chr7 41059900 41060285 + 2 NA Intergenic Intergenic -41512 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 246-441 chrX 43745627 43745817 + 2 NA 3' UTR (NM_000240, exon 15 of 15) 3' UTR (NM_000240, exon 15 of 15) 90815 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 358-431 chr7 33328067 33328397 + 2 NA intron (NM_198428, intron 9 of 22) L2c|LINE|L2 198668 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 614-79 chr3 25252991 25253437 + 2 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -87588 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 309-224 chr19 13614851 13615090 + 2 NA Intergenic Intergenic -108491 NM_023035 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 721-15 chr13 109354029 109354585 + 2 NA Intergenic Intergenic -46389 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 386-168 chr2 58007583 58007839 + 2 NA intron (NM_001288838, intron 1 of 15) Tigger2a|DNA|TcMar-Tigger -38931 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 357-144 chr16 51196993 51197319 + 2 NA intron (NR_039672, intron 5 of 6) intron (NR_039672, intron 5 of 6) -45884 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 284-268 chr3 131675579 131675791 + 2 NA intron (NM_130808, intron 6 of 15) L1MA3|LINE|L1 -172714 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 342-447 chr6 40706653 40706824 + 2 NA Intergenic Intergenic -119374 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 199-35 chr11 58728931 58729100 + 2 NA intron (NM_201648, intron 1 of 5) intron (NM_201648, intron 1 of 5) 2928 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 323-361 chr4 37089877 37090116 + 2 NA Intergenic L1PA15-16|LINE|L1 88217 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 291-86 chr11 116381605 116381794 + 2 NA Intergenic L2c|LINE|L2 -257723 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 350-137 chr14 65172255 65172453 + 2 NA Intergenic L1MC4|LINE|L1 49993 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 564-171 chr6 45210228 45210555 + 2 NA intron (NM_001350325, intron 2 of 10) MER4A1_|LTR|ERV1 -12621 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 195-210 chr5 180896060 180896185 + 2 NA Intergenic L1MA9|LINE|L1 -2955 NM_024850 79908 Hs.189109 NM_024850 ENSG00000113303 BTNL8 BTN9.2 butyrophilin like 8 protein-coding 173-29 chr13 27555531 27555652 + 2 NA intron (NM_153371, intron 7 of 9) L1MB8|LINE|L1 64938 NM_153371 222484 Hs.132359 NM_153371 ENSG00000139517 LNX2 PDZRN1 ligand of numb-protein X 2 protein-coding 301-393 chr6 50377312 50377488 + 2 NA Intergenic Intergenic -327471 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 218-66 chr12 41464190 41464368 + 2 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 26540 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 772-60 chr9 70825768 70826443 + 2 NA intron (NM_001366152, intron 6 of 27) intron (NM_001366152, intron 6 of 27) -16021 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 297-299 chr3 116081991 116082216 + 2 NA intron (NM_001318915, intron 2 of 8) intron (NM_001318915, intron 2 of 8) -176977 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 210-261 chr7 38951375 38951531 + 2 NA Intergenic L2b|LINE|L2 -26456 NM_001370959 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 238-213 chr21 18623395 18623591 + 2 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 62671 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 321-139 chr12 91120403 91120681 + 2 NA Intergenic LTR48|LTR|ERV1 -9048 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 279-167 chr2 40616634 40616897 + 2 NA Intergenic Intergenic -104330 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 390-419 chr9 84427975 84428349 + 2 NA Intergenic L1MC5|LINE|L1 -59435 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 292-280 chr3 29715416 29715622 + 2 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 218637 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 413-57 chr11 113079402 113079654 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -116068 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 335-306 chr21 7925271 7925487 + 2 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -95747 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 438-98 chr18 14079363 14079701 + 2 NA intron (NR_033354, intron 4 of 5) L1MC1|LINE|L1 52903 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 676-102 chr6 167296364 167296835 + 2 NA intron (NM_001143947, intron 3 of 6) intron (NM_001143947, intron 3 of 6) 5284 NM_018974 54346 Hs.567508 NM_018974 ENSG00000112494 UNC93A Unc-93A|dJ366N23.1|dJ366N23.2 unc-93 homolog A protein-coding 422-241 chr5 79719676 79720000 + 2 NA intron (NM_153610, intron 1 of 12) intron (NM_153610, intron 1 of 12) 30002 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 533-54 chr14 71482273 71482578 + 2 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) -5436 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 414-17 chr1 158294706 158295108 + 2 NA TTS (NM_001765) TTS (NM_001765) 4984 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 359-268 chr2 214878657 214879012 + 2 NA intron (NR_110292, intron 2 of 3) MLT1E1|LTR|ERVL-MaLR 31887 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 361-132 chr14 41233939 41234141 + 2 NA Intergenic MLT2A1|LTR|ERVL 279329 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 167-101 chr5 121806340 121806495 + 2 NA Intergenic Intergenic -45465 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 185-161 chr5 42650436 42650580 + 2 NA intron (NM_001242403, intron 3 of 9) MARNA|DNA|TcMar-Mariner 84644 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 628-60 chr19 28769924 28770390 + 2 NA Intergenic L1PREC2|LINE|L1 -42463 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 297-99 chr12 20638943 20639132 + 2 NA intron (NM_000921, intron 9 of 15) intron (NM_000921, intron 9 of 15) -56318 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 281-449 chr8 131647691 131647904 + 2 NA Intergenic Intergenic -256296 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 353-204 chr18 3930831 3931058 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -31409 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 507-167 chr3 120115046 120115459 + 2 NA Intergenic L2c|LINE|L2 -20805 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 295-108 chr12 129503445 129503723 + 2 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 294983 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 249-208 chr2 110929703 110929876 + 2 NA intron (NM_001371254, intron 11 of 18) THE1B-int|LTR|ERVL-MaLR 185799 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 273-138 chr14 77915647 77915859 + 2 NA intron (NM_001366487, intron 8 of 11) intron (NM_001366487, intron 8 of 11) 115644 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 512-122 chr2 95138642 95139113 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -16850 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 281-141 chr15 101035847 101036112 + 2 NA intron (NM_024652, intron 20 of 33) L1MA4A|LINE|L1 116622 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 346-48 chr10 59165300 59165594 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 11017 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 383-36 chr10 65995430 65995656 + 2 NA intron (NM_001127384, intron 15 of 17) L1MA4A|LINE|L1 424118 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 290-397 chr6 133587591 133587843 + 2 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -233430 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 339-540 chr7 104349950 104350226 + 2 NA intron (NM_199000, intron 1 of 2) MIR|SINE|MIR 21432 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 317-68 chr10 111730556 111730763 + 2 NA Intergenic Intergenic 453106 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 630-135 chr8 16480666 16481253 + 2 NA Intergenic L2|LINE|L2 -288168 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 302-64 chr11 2644411 2644700 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 55443 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 403-224 chr4 78090705 78090939 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 33252 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 334-236 chr19 34535151 34535481 + 2 NA Intergenic L1MA5|LINE|L1 10070 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 371-217 chr20 39347875 39348077 + 2 NA Intergenic L1MA9|LINE|L1 -123228 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 463-25 chr1 170114680 170115065 + 2 NA Intergenic Intergenic -31175 NM_001136107 149281 Hs.553612 NM_001136107 ENSG00000203740 METTL11B C1orf184|HOMT1B|NTM1B methyltransferase like 11B protein-coding 400-13 chr1 107957834 107958211 + 2 NA intron (NM_006113, intron 1 of 26) intron (NM_006113, intron 1 of 26) -6421 NR_046653 100873946 Hs.568676 NR_046653 ENSG00000230489 VAV3-AS1 - VAV3 antisense RNA 1 ncRNA 468-317 chr8 108955149 108955575 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -131266 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 485-133 chr2 71846168 71846565 + 2 NA Intergenic Intergenic 301496 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 334-300 chr2 223343332 223343588 + 2 NA Intergenic Intergenic 258901 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 342-226 chr2 31744979 31745204 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 58889 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 505-252 chr5 145266073 145266485 + 2 NA Intergenic Intergenic 569063 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 308-363 chr4 171973546 171973756 + 2 NA intron (NM_001034845, intron 2 of 12) MLT1C|LTR|ERVL-MaLR -160044 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 375-355 chr6 77978690 77978993 + 2 NA Intergenic L1MC3|LINE|L1 325802 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 364-361 chr5 116721293 116721574 + 2 NA Intergenic L1ME4b|LINE|L1 40776 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 883-30 chr4 75120887 75121690 + 2 NA Intergenic L1MA5|LINE|L1 -36580 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 250-310 chr4 73616279 73616462 + 2 NA intron (NM_001270392, intron 1 of 9) intron (NM_001270392, intron 1 of 9) 4066 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 361-243 chr2 180401422 180401611 + 2 NA Intergenic L2c|LINE|L2 -290588 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 524-149 chr3 21561722 21562177 + 2 NA intron (NR_046731, intron 1 of 2) MLT1D|LTR|ERVL-MaLR 19160 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 395-291 chr6 112740641 112740945 + 2 NA Intergenic L1MEc|LINE|L1 393463 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 414-328 chr8 76935717 76935996 + 2 NA Intergenic Intergenic 30994 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 210-87 chr15 91139663 91139843 + 2 NA intron (NM_001323040, intron 2 of 12) MER94|DNA|hAT-Blackjack 37957 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 590-133 chr5 66870831 66871351 + 2 NA intron (NM_015183, intron 1 of 27) MER63B|DNA|hAT-Blackjack 42318 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 421-268 chr6 143094838 143095059 + 2 NA intron (NM_001366355, intron 1 of 4) L1M6|LINE|L1 -31191 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 400-2 chr1 33231566 33231906 + 2 NA Intergenic L2c|LINE|L2 -24756 NM_152493 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 303-348 chr5 19621177 19621432 + 2 NA intron (NM_001349559, intron 5 of 12) L1M2|LINE|L1 264968 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 350-226 chr2 79489104 79489408 + 2 NA Intergenic Intergenic 11588 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 603-51 chr14 65372376 65372778 + 2 NA Intergenic AluSx1|SINE|Alu -37394 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 295-230 chr2 151610638 151610921 + 2 NA exon (NM_004543, exon 75 of 149) exon (NM_004543, exon 75 of 149) 123697 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 330-519 chr8 85407872 85408072 + 2 NA Intergenic L1MB7|LINE|L1 -29859 NM_001738 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 518-163 chr21 24027499 24027901 + 2 NA Intergenic Intergenic 293677 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 245-251 chr4 39690194 39690386 + 2 NA Intergenic Intergenic -7846 NM_001312647 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 475-271 chr8 20675966 20676402 + 2 NA Intergenic Intergenic -61258 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 312-478 chr7 31067067 31067258 + 2 NA intron (NM_001199637, intron 3 of 13) intron (NM_001199637, intron 3 of 13) 14701 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 367-206 chr2 83591291 83591564 + 2 NA Intergenic L1MB5|LINE|L1 68613 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 185-193 chr7 86235891 86236008 + 2 NA Intergenic Charlie6|DNA|hAT-Charlie -407960 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 307-388 chr5 87911792 87912060 + 2 NA Intergenic Intergenic 249884 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 234-21 chr1 188329451 188329626 + 2 NA Intergenic Intergenic 885910 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 329-123 chr12 48206587 48206802 + 2 NA Intergenic L1PA16|LINE|L1 -3402 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 351-468 chr8 29507309 29507652 + 2 NA Intergenic MER88|LTR|ERVL -156796 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 480-49 chr11 84068688 84069005 + 2 NA intron (NM_001142699, intron 10 of 27) MIRb|SINE|MIR 204434 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 558-117 chr20 39602243 39602694 + 2 NA Intergenic Intergenic -377720 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 186-126 chr5 18629259 18629406 + 2 NA Intergenic Intergenic 822058 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 219-113 chr15 61449573 61449709 + 2 NA Intergenic Intergenic -220339 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 273-100 chr12 24380657 24380919 + 2 NA intron (NM_152989, intron 2 of 17) intron (NM_152989, intron 2 of 17) 157517 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 364-393 chr6 138143316 138143564 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -18499 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 231-7 chr1 49130915 49131098 + 2 NA intron (NM_001323575, intron 4 of 12) L1ME1|LINE|L1 -126405 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 532-63 chr13 108817414 108817885 + 2 NA intron (NM_015011, intron 7 of 34) L1ME3A|LINE|L1 188038 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 339-511 chr6 158524871 158525110 + 2 NA Intergenic L2c|LINE|L2 -11446 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 328-285 chr2 150921126 150921398 + 2 NA Intergenic X1_LINE|LINE|CR1 292365 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 349-497 chr8 65957802 65958040 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -57057 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 290-461 chr8 121438407 121438672 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -200807 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 215-271 chr5 173179850 173180033 + 2 NA Intergenic Intergenic 35410 NM_013978 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 236-234 chr3 105245061 105245250 + 2 NA Intergenic Intergenic -121558 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 560-124 chr4 29033656 29034089 + 2 NA Intergenic Intergenic 37088 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 527-218 chr5 153803526 153803980 + 2 NA intron (NM_000827, intron 15 of 15) intron (NM_000827, intron 15 of 15) 95234 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 569-45 chr12 3443265 3443661 + 2 NA intron (NM_001256536, intron 1 of 9) L2|LINE|L2 -47740 NM_019854 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 340-103 chr12 33698166 33698494 + 2 NA Intergenic Intergenic -258511 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 262-168 chr17 53618227 53618435 + 2 NA Intergenic Intergenic -204596 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 284-22 chr1 192690695 192690878 + 2 NA Intergenic Intergenic -25542 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 365-9 chr1 72906779 72907044 + 2 NA Intergenic Intergenic -399259 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 373-173 chr19 8808806 8809169 + 2 NA TTS (NM_001304350) TTS (NM_001304350) 13076 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 451-154 chr3 146310768 146311088 + 2 NA Intergenic L1MA9|LINE|L1 -59749 NM_001128306 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 206-69 chr14 81958338 81958480 + 2 NA Intergenic Intergenic -215271 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 434-148 chr2 104953288 104953670 + 2 NA intron (NR_110603, intron 1 of 2) L1M4|LINE|L1 -80884 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 356-131 chr13 80670560 80670793 + 2 NA Intergenic L1MA1|LINE|L1 -329550 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 491-275 chr9 71005661 71006067 + 2 NA intron (NM_001366143, intron 1 of 25) L1MA6|LINE|L1 115757 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 289-8 chr1 81290953 81291165 + 2 NA Intergenic Intergenic -15133 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 357-75 chr11 120822502 120822691 + 2 NA intron (NM_001282470, intron 5 of 19) MER3|DNA|hAT-Charlie -3481 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 249-284 chr3 188019025 188019230 + 2 NA Intergenic MIRb|SINE|MIR -42720 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 291-150 chr15 63668836 63669070 + 2 NA intron (NM_003922, intron 40 of 77) L1MEc|LINE|L1 -68126 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 530-280 chr9 130811178 130811544 + 2 NA intron (NM_007313, intron 1 of 10) L1MEc|LINE|L1 -23893 NM_005157 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 302-132 chr14 73375298 73375488 + 2 NA intron (NM_001005743, intron 2 of 12) MIR|SINE|MIR 83187 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 412-286 chr6 125605616 125606006 + 2 NA Intergenic L1MC1|LINE|L1 -68542 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 334-524 chr8 52897194 52897442 + 2 NA Intergenic MSTA1|LTR|ERVL-MaLR -42590 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 703-43 chr2 57088093 57088653 + 2 NA Intergenic L1ME1|LINE|L1 -819278 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 604-80 chr2 67774177 67774757 + 2 NA Intergenic L2c|LINE|L2 51095 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 168-25 chr13 103625843 103626004 + 2 NA Intergenic Intergenic 200723 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 218-169 chr2 136090510 136090717 + 2 NA Intergenic L2b|LINE|L2 25622 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 295-188 chr18 72182913 72183174 + 2 NA Intergenic Intergenic 361299 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 334-98 chr11 112794456 112794759 + 2 NA Intergenic Intergenic -166813 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 351-141 chr14 85817659 85817958 + 2 NA Intergenic Intergenic -116870 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 263-47 chr10 54608431 54608601 + 2 NA promoter-TSS (NR_031642) promoter-TSS (NR_031642) -559 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 507-96 chr15 87374769 87375169 + 2 NA Intergenic L1PA16|LINE|L1 -201960 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 258-138 chr15 27203927 27204063 + 2 NA intron (NM_001270873, intron 3 of 5) L1PA15|LINE|L1 -42676 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 683-78 chr7 14025472 14026103 + 2 NA Intergenic AluSq2|SINE|Alu -34362 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 331-260 chr2 46651154 46651443 + 2 NA Intergenic MIRb|SINE|MIR 34083 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 663-103 chr7 38961325 38961845 + 2 NA Intergenic L1PA12|LINE|L1 -16324 NM_001370959 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 371-402 chr8 139073770 139074062 + 2 NA Intergenic Intergenic -159875 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 283-50 chr10 52174976 52175179 + 2 NA intron (NM_001098512, intron 9 of 17) L1MA5A|LINE|L1 139051 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 317-539 chr9 132492880 132493044 + 2 NA intron (NM_207417, intron 2 of 6) intron (NM_207417, intron 2 of 6) 82751 NM_001282957 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 328-251 chr2 38078144 38078375 + 2 NA Intergenic Intergenic -2078 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 237-155 chr19 39611623 39611820 + 2 NA Intergenic L1PB2|LINE|L1 9197 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 496-136 chr2 83723803 83724278 + 2 NA Intergenic L1MB5|LINE|L1 201226 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 361-471 chr9 4202519 4202803 + 2 NA intron (NM_001042413, intron 2 of 10) L1PA16|LINE|L1 -50478 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 389-179 chr2 98682840 98683216 + 2 NA intron (NM_012214, intron 2 of 15) AluY|SINE|Alu -19555 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 754-60 chr4 106335785 106336491 + 2 NA intron (NM_001142416, intron 5 of 6) AluJb|SINE|Alu -19344 NM_001163436 93627 Hs.151498 NM_033115 ENSG00000145348 TBCK HSPC302|IHPRF3|TBCKL TBC1 domain containing kinase protein-coding 186-115 chr3 190338097 190338249 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -15727 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 375-270 chr3 131682238 131682455 + 2 NA intron (NM_130808, intron 6 of 15) L1MA3|LINE|L1 -179375 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 249-183 chr2 19116719 19116957 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -89867 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 269-392 chr8 15993726 15993899 + 2 NA Intergenic Intergenic 192460 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 408-162 chr2 118524369 118524719 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 78422 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 503-224 chr5 12313495 12313792 + 2 NA Intergenic L1MB7|LINE|L1 -261214 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 598-64 chr19 29902474 29903005 + 2 NA Intergenic L1MD|LINE|L1 -20918 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 475-47 chr11 98795104 98795389 + 2 NA Intergenic Intergenic -225703 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 401-266 chr5 105270861 105271104 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 171508 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 450-226 chr4 70454060 70454371 + 2 NA intron (NM_001145006, intron 1 of 3) L1M1|LINE|L1 -17743 NM_001145007 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 224-62 chr12 23815635 23815836 + 2 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 133935 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 270-440 chrX 57409024 57409183 + 2 NA intron (NM_001353840, intron 7 of 9) Tigger3a|DNA|TcMar-Tigger 122249 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 480-27 chr10 35967124 35967379 + 2 NA Intergenic L1MCa|LINE|L1 188949 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 341-398 chr4 131524300 131524582 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -240397 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 369-166 chr18 56327063 56327401 + 2 NA Intergenic Intergenic -135970 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 178 chr1 24786384 24786529 + 2 NA intron (NM_013943, intron 1 of 5) intron (NM_013943, intron 1 of 5) 41009 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 644-68 chr4 33334905 33335262 + 2 NA Intergenic L1PB4|LINE|L1 704810 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 329-562 chr8 23210849 23211109 + 2 NA intron (NM_003844, intron 2 of 9) L1M4|LINE|L1 14123 NM_003844 8797 Hs.213467 NM_003844 ENSG00000104689 TNFRSF10A APO2|CD261|DR4|TRAILR-1|TRAILR1 TNF receptor superfamily member 10a protein-coding 590-109 chr3 122114690 122115108 + 2 NA intron (NM_001206925, intron 4 of 5) L1ME1|LINE|L1 37050 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 279-239 chr22 30990131 30990383 + 2 NA Intergenic Intergenic 21046 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 572-67 chr16 79175449 79175855 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 425085 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 205-299 chr9 129057970 129058106 + 2 NA intron (NR_138421, intron 7 of 16) Tigger2|DNA|TcMar-Tigger 21104 NM_032809 84895 Hs.632693 NM_032809 ENSG00000148343 MIGA2 C9orf54|FAM73B mitoguardin 2 protein-coding 249-422 chr8 101899425 101899599 + 2 NA intron (NM_001040624, intron 4 of 7) L1MD2|LINE|L1 -84920 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 406-35 chr10 54280952 54281305 + 2 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -205102 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 274-360 chr7 87386397 87386564 + 2 NA intron (NM_021151, intron 13 of 17) L1MA4|LINE|L1 40816 NM_001243745 54677 Hs.125039 NM_021151 ENSG00000005469 CROT COT carnitine O-octanoyltransferase protein-coding 398-93 chr14 25945977 25946179 + 2 NA Intergenic Intergenic 607352 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 346-344 chr4 30571911 30572194 + 2 NA Intergenic Intergenic -148317 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 463-77 chr13 35913749 35914073 + 2 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -58050 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 228-86 chr13 80575081 80575298 + 2 NA Intergenic Intergenic -234063 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 172 chr1 35029819 35029987 + 2 NA intron (NM_007167, intron 2 of 15) L2a|LINE|L2 2042 NM_007167 9204 Hs.533986 NM_007167 ENSG00000163867 ZMYM6 Buster2|MYM|ZBED7|ZNF198L4|ZNF258 zinc finger MYM-type containing 6 protein-coding 353-206 chr18 7215793 7216116 + 2 NA Intergenic AluSx3|SINE|Alu -15150 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 234-45 chr10 94025026 94025193 + 2 NA intron (NM_001288989, intron 1 of 32) MLT1J|LTR|ERVL-MaLR 31178 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 471-175 chr3 168155213 168155585 + 2 NA Intergenic L1PB4|LINE|L1 -59475 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 305-559 chr9 29225702 29225995 + 2 NA Intergenic L1M5|LINE|L1 -12247 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 329-114 chr12 23485959 23486242 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 98486 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 344-42 chr10 18698171 18698350 + 2 NA Intergenic Intergenic 38829 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 166-103 chr6 36178525 36178670 + 2 NA Intergenic L1M4|LINE|L1 -18147 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 239-324 chr5 105046953 105047160 + 2 NA Intergenic MER113|DNA|hAT-Charlie -52418 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 387-141 chr17 60868976 60869295 + 2 NA intron (NM_001330413, intron 8 of 25) intron (NM_001330413, intron 8 of 25) 191284 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 426-162 chr20 44343457 44343831 + 2 NA intron (NM_178491, intron 3 of 4) intron (NM_178491, intron 3 of 4) 6486 NM_178491 140902 Hs.580807 NM_178491 ENSG00000101074 R3HDML dJ881L22.3 R3H domain containing like protein-coding 571-45 chr14 41626611 41626987 + 2 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 19943 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 393-130 chr17 62755417 62755753 + 2 NA intron (NM_001288779, intron 4 of 11) intron (NM_001288779, intron 4 of 11) 49379 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 251-376 chr7 70803483 70803702 + 2 NA Intergenic L1MA9|LINE|L1 -328552 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 415-180 chr3 81196215 81196570 + 2 NA Intergenic Intergenic 202524 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 345-375 chr4 27181409 27181737 + 2 NA Intergenic Intergenic -35906 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 365-223 chr2 222494426 222494773 + 2 NA intron (NM_152386, intron 2 of 4) intron (NM_152386, intron 2 of 4) 70056 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 440-44 chr12 27184440 27184772 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -59680 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 267-343 chr5 107180287 107180518 + 2 NA Intergenic Intergenic -169388 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 1052-8 chr14 82580737 82581539 + 2 NA Intergenic Intergenic -61494 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 647-40 chr18 66238070 66238477 + 2 NA Intergenic Intergenic 365817 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 303-381 chr5 155683760 155683912 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -642921 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 308-110 chr12 64805303 64805545 + 2 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) -19223 NM_001364838 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 273-329 chr4 85655213 85655421 + 2 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -67151 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 244-227 chr3 49878073 49878251 + 2 NA Intergenic Intergenic -8256 NM_024046 79012 Hs.145156 NM_024046 ENSG00000164076 CAMKV 1G5|VACAMKL CaM kinase like vesicle associated protein-coding 663-4 chr1 50007417 50007879 + 2 NA intron (NM_001323575, intron 1 of 12) AluJo|SINE|Alu 16306 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 281-170 chr18 5831764 5832029 + 2 NA Intergenic AluJb|SINE|Alu -8799 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 392-10 chr1 158598232 158598526 + 2 NA Intergenic L1MA4A|LINE|L1 -8060 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 279-331 chr5 91444883 91445092 + 2 NA Intergenic AluJb|SINE|Alu -61670 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 392-3 chr1 82128487 82128830 + 2 NA Intergenic Intergenic 326205 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 458-185 chr4 84227233 84227541 + 2 NA intron (NR_125909, intron 5 of 8) intron (NR_125909, intron 5 of 8) 71782 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 239-272 chr4 35734180 35734370 + 2 NA Intergenic Intergenic 509664 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 256-332 chr5 111679532 111679741 + 2 NA intron (NR_040093, intron 2 of 6) intron (NR_040093, intron 2 of 6) 76615 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 319-208 chr18 65809789 65810071 + 2 NA exon (NM_001317214, exon 3 of 11) exon (NM_001317214, exon 3 of 11) 58918 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 507-116 chr19 58076145 58076498 + 2 NA Intergenic Intergenic 17039 NM_003436 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 265-222 chr21 22310642 22310847 + 2 NA Intergenic L1ME1|LINE|L1 212127 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 326-558 chr8 135334277 135334579 + 2 NA Intergenic Intergenic 100297 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 245-292 chr5 130189498 130189735 + 2 NA Intergenic Intergenic 285151 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 286-14 chr1 80286303 80286559 + 2 NA Intergenic Intergenic -249324 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 413-240 chr5 42712541 42712899 + 2 NA intron (NM_001242403, intron 7 of 9) intron (NM_001242403, intron 7 of 9) -44098 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 321-155 chr13 65341139 65341436 + 2 NA Intergenic Intergenic -524760 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 234-43 chr10 85743355 85743525 + 2 NA intron (NM_017551, intron 8 of 15) MLT1H1|LTR|ERVL-MaLR 165709 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 362-209 chr2 50785962 50786271 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -89854 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 404-319 chr8 94276061 94276363 + 2 NA Intergenic Intergenic -13893 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 284-127 chr14 88951424 88951589 + 2 NA Intergenic LOR1a|LTR|ERV1 126855 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 323-355 chr3 195408013 195408218 + 2 NA intron (NM_012287, intron 1 of 22) L1MB3|LINE|L1 34905 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 342-323 chr3 94958053 94958285 + 2 NA intron (NR_015400, intron 1 of 7) AluSq|SINE|Alu 19906 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 314-93 chr11 38276757 38276979 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 338267 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 503-65 chr12 20760231 20760658 + 2 NA Intergenic Intergenic -50261 NM_019844 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 364-34 chr1 208958518 208958722 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -13834 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 226-353 chr8 111155585 111155780 + 2 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) 80521 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 214-210 chr3 82174458 82174660 + 2 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 188417 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 467-128 chr2 17392004 17392373 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 126252 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 404-23 chr1 187125034 187125346 + 2 NA intron (NR_126347, intron 1 of 3) L1MEb|LINE|L1 32348 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 332-529 chr8 87334262 87334448 + 2 NA intron (NM_173538, intron 8 of 10) L1PA8|LINE|L1 467940 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 461-154 chr20 16998335 16998778 + 2 NA Intergenic Intergenic -227551 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 335-438 chr5 133313697 133313884 + 2 NA intron (NM_015082, intron 5 of 15) intron (NM_015082, intron 5 of 15) 113916 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 248-404 chr8 101352145 101352305 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -16668 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 276-55 chr10 52322746 52322911 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 8547 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 251-37 chr10 81786039 81786197 + 2 NA Intergenic Intergenic -89076 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 312-512 chr8 63831283 63831582 + 2 NA Intergenic Tigger10|DNA|TcMar-Tigger 62002 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 557-199 chr8 98380001 98380400 + 2 NA Intergenic L1MB1|LINE|L1 13538 NR_162095 113218497 NR_162095 MIR9903 - microRNA 9903 ncRNA 724-72 chr5 93096923 93097442 + 2 NA Intergenic MER21B|LTR|ERVL 474161 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 454-306 chr8 64041721 64042044 + 2 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 272452 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 210-88 chr15 94319464 94319591 + 2 NA intron (NM_018349, intron 3 of 21) MER5A|DNA|hAT-Charlie 21326 NM_001159643 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 610-84 chr2 76128533 76128944 + 2 NA Intergenic Intergenic -417823 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 301-259 chr20 55853463 55853639 + 2 NA Intergenic Intergenic 151968 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 282-493 chr9 103596395 103596616 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -271472 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 320-142 chr14 37469005 37469182 + 2 NA intron (NM_138731, intron 12 of 13) L2c|LINE|L2 126156 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 524-26 chr10 25551000 25551502 + 2 NA intron (NM_020752, intron 6 of 10) intron (NM_020752, intron 6 of 10) -100461 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 331-293 chr2 164647778 164648101 + 2 NA Intergenic L1MB3|LINE|L1 -26457 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 436-119 chr19 22891011 22891375 + 2 NA Intergenic L1MC4a|LINE|L1 58902 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 319-501 chr7 45981759 45981948 + 2 NA Intergenic Intergenic -60581 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 180-154 chr7 30210535 30210668 + 2 NA Intergenic UCON132b|DNA|hAT-Tip100 -73996 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 476-11 chr1 175767451 175767854 + 2 NA Intergenic MIRc|SINE|MIR -24057 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 390-288 chr5 31543074 31543351 + 2 NA intron (NR_134298, intron 6 of 8) intron (NR_134298, intron 6 of 8) 10911 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 560-27 chr11 40002069 40002470 + 2 NA Intergenic L1MB7|LINE|L1 290861 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 410-207 chr4 23733805 23734157 + 2 NA Intergenic Intergenic 147311 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 170-107 chr4 116587207 116587347 + 2 NA Intergenic L1MCb|LINE|L1 287552 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 213-181 chr3 110286417 110286535 + 2 NA Intergenic L1M4|LINE|L1 683648 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 323-426 chr5 101282310 101282512 + 2 NA Intergenic MLT2B2|LTR|ERVL -379129 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 343-595 chrX 141154740 141154969 + 2 NA Intergenic L2a|LINE|L2 22275 NM_012317 23641 Hs.45231 NM_012317 ENSG00000182195 LDOC1 BCUR1|Mar7|Mart7|RTL7|SIRH7 LDOC1 regulator of NFKB signaling protein-coding 457-228 chr7 31099777 31100061 + 2 NA intron (NM_001199637, intron 11 of 13) intron (NM_001199637, intron 11 of 13) 47458 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 470-112 chr19 34522915 34523248 + 2 NA Intergenic L1ME1|LINE|L1 22305 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 164-8 chr1 197995125 197995251 + 2 NA Intergenic L2a|LINE|L2 77816 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 568-185 chr7 113940296 113940799 + 2 NA Intergenic Intergenic -21538 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 541-57 chr13 95522924 95523364 + 2 NA intron (NR_046533, intron 2 of 3) L1MEg|LINE|L1 10766 NR_046533 100874194 Hs.569229 NR_046533 ENSG00000223392 CLDN10-AS1 - CLDN10 antisense RNA 1 ncRNA 348-549 chr9 27770195 27770402 + 2 NA Intergenic LTR29|LTR|ERV1 -196432 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 363-104 chr12 72444118 72444313 + 2 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -170706 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 335-129 chr12 93868258 93868483 + 2 NA intron (NR_135147, intron 3 of 3) intron (NR_135147, intron 3 of 3) 75236 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 177-14 chr10 19909988 19910151 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 93637 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 308-48 chr10 17803371 17803648 + 2 NA Intergenic L1MB4|LINE|L1 -5839 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 190-169 chr7 138114126 138114294 + 2 NA intron (NM_001190906, intron 7 of 7) MIRc|SINE|MIR -9548 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 346-187 chr17 33090768 33091021 + 2 NA intron (NM_183377, intron 2 of 9) intron (NM_183377, intron 2 of 9) 98043 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 473-33 chr10 67197959 67198382 + 2 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 185904 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 405-147 chr2 106719450 106719833 + 2 NA Intergenic L1MC2|LINE|L1 166387 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 206-120 chr2 103078587 103078778 + 2 NA Intergenic L1PB|LINE|L1 -94253 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 624-96 chr5 31351488 31351987 + 2 NA Intergenic Intergenic 158051 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 377-410 chr8 119462776 119463045 + 2 NA Intergenic L1PA13|LINE|L1 46464 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 307-407 chr5 163116580 163116807 + 2 NA Intergenic L1M3|LINE|L1 -320878 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 368-424 chr7 56466291 56466540 + 2 NA Intergenic Intergenic 16904 NR_108095 100240728 Hs.292105 NR_108095 ENSG00000225488 LOC100240728 - uncharacterized LOC100240728 ncRNA 301-337 chr4 136667665 136667855 + 2 NA Intergenic L1M4c|LINE|L1 -525996 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 908-2 chr10 52115931 52116640 + 2 NA intron (NM_001098512, intron 7 of 17) MER53|DNA|hAT 197843 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 292-166 chr16 78882535 78882801 + 2 NA intron (NM_001291997, intron 7 of 7) AluSz|SINE|Alu 718069 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 629-72 chr20 9866150 9866611 + 2 NA Intergenic Intergenic -27304 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 235-117 chr15 86361563 86361756 + 2 NA intron (NM_152336, intron 17 of 24) L1MA9|LINE|L1 -44691 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 541-65 chr14 62583141 62583541 + 2 NA Intergenic L1ME2z|LINE|L1 -443368 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 497-204 chr4 82012913 82013361 + 2 NA Intergenic Intergenic 360854 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 432-212 chr4_GL000008v2_random 929 1225 + 2 NA Intergenic AluJb|SINE|Alu 177094 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 214-265 chr5 90215676 90215785 + 2 NA intron (NR_120601, intron 3 of 5) L1MB3|LINE|L1 74341 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 136-83 chr8 23611176 23611259 + 2 NA Intergenic Intergenic 71672 NM_001256339 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 220-345 chr7 54357012 54357183 + 2 NA Intergenic Intergenic 26400 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 472-319 chr8 101448054 101448453 + 2 NA Intergenic MER91C|DNA|hAT-Tip100 -44186 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 114-64 chr8 103166568 103166656 + 2 NA intron (NR_109954, intron 1 of 2) intron (NR_109954, intron 1 of 2) 5528 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 115-21 chr2 177748619 177748710 + 2 NA intron (NM_001077197, intron 11 of 20) intron (NM_001077197, intron 11 of 20) 75342 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 340-482 chr6 138857402 138857596 + 2 NA intron (NM_001077706, intron 10 of 21) L2|LINE|L2 61388 NM_001077706 345930 Hs.660603 NM_001077706 ENSG00000203734 ECT2L ARHGEF32|C6orf91|FBXO49|LFDH|dJ509I19.2|dJ509I19.3|dJ509I19.5 epithelial cell transforming 2 like protein-coding 365-198 chr2 107592564 107592798 + 2 NA Intergenic Intergenic 63262 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 689-83 chr5 121678229 121678643 + 2 NA Intergenic Intergenic -173446 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 231-362 chr8 130244101 130244295 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 52335 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 229-104 chr13 105322430 105322616 + 2 NA Intergenic Intergenic -143344 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 411-123 chr17 80034036 80034403 + 2 NA intron (NM_019020, intron 1 of 11) AluSx|SINE|Alu 1653 NM_019020 125058 Hs.369819 NM_019020 ENSG00000167291 TBC1D16 - TBC1 domain family member 16 protein-coding 161-98 chr6 140755349 140755444 + 2 NA Intergenic Intergenic 71582 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 348-542 chr8 139492425 139492710 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 210556 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 421-238 chr5 57059589 57059825 + 2 NA Intergenic L1M5|LINE|L1 -107577 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 254-56 chr11 54932819 54933062 + 2 NA Intergenic ALR/Alpha|Satellite|centr 226108 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 178-63 chr2 67895752 67895904 + 2 NA Intergenic Intergenic -70266 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 518-27 chr10 43537540 43537925 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 30727 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 241-31 chr10 16220956 16221137 + 2 NA Intergenic L1ME3C|LINE|L1 -215897 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 253-390 chr7 85790289 85790512 + 2 NA Intergenic Intergenic 369278 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 294-27 chr1 241044657 241044881 + 2 NA intron (NM_001350116, intron 3 of 16) L1M6|LINE|L1 -87503 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 344-99 chr12 15020037 15020342 + 2 NA Intergenic Intergenic 18356 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 271-424 chr8 31763008 31763200 + 2 NA intron (NM_013962, intron 1 of 4) L1ME2|LINE|L1 123352 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 271-76 chr11 98127217 98127410 + 2 NA Intergenic Intergenic -893636 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 416-339 chr8 113379341 113379691 + 2 NA intron (NM_001363185, intron 1 of 66) L2a|LINE|L2 -2364 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 312-491 chr7 87627105 87627277 + 2 NA intron (NM_001348945, intron 2 of 31) intron (NM_001348945, intron 2 of 31) -1207 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 188-151 chr4 43763512 43763673 + 2 NA Intergenic MLT2F|LTR|ERVL -253269 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 313-159 chr14 84138974 84139146 + 2 NA Intergenic L1ME3G|LINE|L1 -1132872 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 289-443 chr7 91276718 91276983 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 12417 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 277-149 chr17 51554773 51554985 + 2 NA Intergenic LTR88b|LTR|Gypsy? 119452 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 803-47 chr5 110573601 110574066 + 2 NA intron (NM_001039763, intron 10 of 13) L2a|LINE|L2 -59918 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 184-75 chr18 40724134 40724291 + 2 NA Intergenic Intergenic 657926 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 505-265 chr6 40519489 40519855 + 2 NA intron (NM_020737, intron 1 of 2) MLT1H|LTR|ERVL-MaLR 67692 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 373-103 chr13 84328784 84329048 + 2 NA intron (NR_046871, intron 3 of 6) L1ME3C|LINE|L1 188314 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 236-219 chr3 57639129 57639320 + 2 NA intron (NM_152678, intron 12 of 19) L1M4|LINE|L1 41435 NR_132370 106144532 Hs.667207 NR_132369 ENSG00000272146 ARF4-AS1 - ARF4 antisense RNA 1 ncRNA 747-6 chr10 55511262 55511909 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -87457 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 220-337 chr7 32053047 32053212 + 2 NA intron (NM_001191059, intron 2 of 18) MIR|SINE|MIR 17278 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 342-466 chr6 123130986 123131169 + 2 NA Intergenic L2a|LINE|L2 134842 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 521-27 chr10 47189877 47190257 + 2 NA Intergenic Intergenic -110130 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 318-220 chr18 45397219 45397420 + 2 NA intron (NM_001371319, intron 4 of 23) L1PA14|LINE|L1 109717 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 351-467 chr8 29448650 29448876 + 2 NA Intergenic Intergenic -98079 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 394-307 chr7 63376839 63377128 + 2 NA Intergenic AluJo|SINE|Alu 22058 NR_028349 100287834 Hs.742597 NR_028349 LOC100287834 - uncharacterized LOC100287834 ncRNA 303-100 chr13 26706010 26706181 + 2 NA Intergenic L1MEd|LINE|L1 54691 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 201-90 chr15 69689342 69689475 + 2 NA intron (NR_126437, intron 5 of 5) MLT1F-int|LTR|ERVL-MaLR 97208 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 343-519 chr7 106498903 106499123 + 2 NA Intergenic Intergenic 162145 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 402-32 chr10 61461611 61461922 + 2 NA intron (NR_120643, intron 1 of 5) intron (NR_120643, intron 1 of 5) -8385 NM_178505 219623 Hs.623955 NM_178505 ENSG00000196932 TMEM26 - transmembrane protein 26 protein-coding 472-281 chr6 118140505 118140883 + 2 NA intron (NM_001029858, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 54791 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 171-44 chr17 11444340 11444471 + 2 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -154065 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 537-3 chr1 36898710 36899063 + 2 NA intron (NM_000831, intron 1 of 15) L1MB3|LINE|L1 135629 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 329-336 chr21 27333380 27333549 + 2 NA Intergenic L1PB1|LINE|L1 -366376 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 329-186 chr15 52882003 52882171 + 2 NA Intergenic Intergenic -91751 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 180-94 chr20 24404130 24404266 + 2 NA Intergenic L1MB7|LINE|L1 -65001 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 353-400 chr5 10992354 10992651 + 2 NA intron (NM_001288715, intron 18 of 20) intron (NM_001288715, intron 18 of 20) -231268 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 211-89 chr14 81680263 81680426 + 2 NA Intergenic Intergenic -57283 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 364-84 chr11 30849503 30849771 + 2 NA Intergenic Intergenic 143049 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 595-54 chr15 37192713 37193173 + 2 NA Intergenic L1ME2z|LINE|L1 -91632 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 276-164 chr15 62221317 62221522 + 2 NA Intergenic Intergenic -18101 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 357-278 chr3 101032494 101032704 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -39109 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 347-334 chr4 31189392 31189732 + 2 NA intron (NR_125935, intron 2 of 4) intron (NR_125935, intron 2 of 4) 18418 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 285-336 chr5 41116205 41116424 + 2 NA Intergenic Intergenic -44972 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 273-429 chr7 89582686 89582940 + 2 NA Intergenic Intergenic -536587 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 252-418 chr8 78063623 78063813 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -452622 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 228-165 chr2 79309839 79310034 + 2 NA Intergenic L1ME3Cz|LINE|L1 -150183 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 290-102 chr12 25768024 25768171 + 2 NA Intergenic Intergenic 105982 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 227-130 chr16 73014309 73014450 + 2 NA intron (NM_006885, intron 1 of 9) intron (NM_006885, intron 1 of 9) 33749 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 293-33 chr10 48929373 48929629 + 2 NA intron (NM_020945, intron 47 of 61) intron (NM_020945, intron 47 of 61) -15266 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 334-313 chr20 56016169 56016441 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -10786 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 206-52 chr11 116379874 116380028 + 2 NA Intergenic Intergenic -259471 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 202-90 chr16 79960227 79960388 + 2 NA Intergenic Intergenic 165058 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 246-133 chr15 80896063 80896302 + 2 NA intron (NM_001293304, intron 12 of 29) intron (NM_001293304, intron 12 of 29) -54109 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 315-171 chr16 51269504 51269701 + 2 NA intron (NR_039672, intron 6 of 6) MLT1I|LTR|ERVL-MaLR -118330 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 291-241 chr2 187891451 187891670 + 2 NA Intergenic MER4A1|LTR|ERV1 -337055 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 308-384 chr5 68004270 68004475 + 2 NA Intergenic Intergenic -185504 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 325-269 chr2 82605589 82605795 + 2 NA Intergenic L2a|LINE|L2 -251111 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 332-453 chr6 51106728 51106907 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 287946 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 358-169 chr18 67423254 67423439 + 2 NA Intergenic Intergenic -93200 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 701-92 chr8 70411584 70412199 + 2 NA Intergenic L1ME3A|LINE|L1 -7674 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 448-112 chr2 80546563 80546956 + 2 NA intron (NM_001282599, intron 5 of 11) intron (NM_001282599, intron 5 of 11) 233380 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 370-256 chr2 180445758 180446019 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -246216 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 320-48 chr10 16619089 16619372 + 2 NA intron (NM_152724, intron 7 of 7) intron (NM_152724, intron 7 of 7) -97351 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 334-10 chr1 63726510 63726751 + 2 NA Intergenic MIRb|SINE|MIR -47387 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 357-197 chr2 51565552 51565902 + 2 NA intron (NR_135237, intron 5 of 10) L1MEc|LINE|L1 533126 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 244-27 chr10 26444458 26444683 + 2 NA intron (NM_019043, intron 2 of 14) L2a|LINE|L2 6229 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 489-142 chr2 107372118 107372439 + 2 NA Intergenic L1ME4b|LINE|L1 -22753 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 519-35 chr11 82007054 82007430 + 2 NA intron (NR_120571, intron 6 of 7) intron (NR_120571, intron 6 of 7) -116406 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 620-53 chr18 37663945 37664341 + 2 NA Intergenic Intergenic 7008 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 712-79 chr5 113701290 113701776 + 2 NA Intergenic L2a|LINE|L2 187839 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 463-114 chr18 4827618 4827908 + 2 NA Intergenic Intergenic -253419 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 168-38 chr15 62652891 62653035 + 2 NA intron (NM_015059, intron 3 of 55) intron (NM_015059, intron 3 of 55) 5652 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 230-137 chr16 53327758 53327948 + 2 NA TTS (NM_001308319) TTS (NM_001308319) 43359 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 211-19 chr1 188187320 188187489 + 2 NA Intergenic Intergenic 743776 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 434-216 chr4 167783025 167783440 + 2 NA Intergenic L1MD|LINE|L1 -309305 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 269-65 chr11 50180754 50180949 + 2 NA Intergenic Intergenic 117611 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 346-106 chr12 57587531 57587868 + 2 NA Intergenic AluSz|SINE|Alu -3493 NM_001146260 79837 Hs.745011 NM_024779 ENSG00000166908 PIP4K2C PIP5K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma protein-coding 226-98 chr14 87160722 87160888 + 2 NA Intergenic Intergenic 255027 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 554-15 chr1 159431670 159432167 + 2 NA promoter-TSS (NR_145510) promoter-TSS (NR_145510) -274 NR_145510 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 549-201 chr7 110603807 110604250 + 2 NA Intergenic Intergenic -486978 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 324-365 chr3 128854946 128855188 + 2 NA Intergenic HERV3-int|LTR|ERV1 8259 NR_162138 113219457 NR_162138 MIR12124 - microRNA 12124 ncRNA 208-50 chr11 124004749 124004875 + 2 NA Intergenic Intergenic -9651 NM_001355219 79490 NM_001355219 ENSG00000198674 OR10G6 OR10G6P|OR10G6Q olfactory receptor family 10 subfamily G member 6 protein-coding 336-146 chr13 20210736 20210990 + 2 NA Intergenic L1MD1|LINE|L1 -17925 NM_004004 2706 Hs.524894 NM_004004 ENSG00000165474 GJB2 CX26|DFNA3|DFNA3A|DFNB1|DFNB1A|HID|KID|NSRD1|PPK gap junction protein beta 2 protein-coding 346-428 chr6 78188650 78188916 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 350526 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 392-262 chr5 130994683 130994941 + 2 NA Intergenic Intergenic 170444 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 968-18 chr4 110984255 110984840 + 2 NA Intergenic L2a|LINE|L2 -123900 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 129-44 chr2 174230880 174230990 + 2 NA intron (NM_001011708, intron 1 of 9) L1MEc|LINE|L1 17597 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 154-55 chr2 238590835 238590940 + 2 NA Intergenic L1ME4a|LINE|L1 -35388 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 270-57 chr11 73496952 73497154 + 2 NA intron (NM_001286051, intron 1 of 5) intron (NM_001286051, intron 1 of 5) 101059 NM_001286051 23201 Hs.475334 NM_015159 ENSG00000054965 FAM168A KIAA0280|TCRP1 family with sequence similarity 168 member A protein-coding 424-63 chr13 84482507 84482823 + 2 NA intron (NR_046871, intron 3 of 6) (TATTATA)n|Simple_repeat|Simple_repeat -300989 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 301-449 chr8 81033424 81033625 + 2 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 78544 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 379-135 chr18 77500927 77501239 + 2 NA Intergenic Intergenic 251235 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 268-39 chr10 35261688 35261897 + 2 NA intron (NM_181698, intron 3 of 11) AluSq2|SINE|Alu 14767 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 572-35 chr12 9915932 9916330 + 2 NA intron (NM_001130711, intron 4 of 4) intron (NM_001130711, intron 4 of 4) 16239 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 817-35 chr3 46771208 46771780 + 2 NA Intergenic L1MA9|LINE|L1 -14639 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 321-189 chr15 24810536 24810750 + 2 NA Intergenic L1PA15|LINE|L1 -12965 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 134-26 chr13 84083008 84083096 + 2 NA Intergenic Intergenic -57550 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 336-256 chr2 19401465 19401689 + 2 NA Intergenic Intergenic -42954 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 441-120 chr2 34167489 34167773 + 2 NA intron (NR_126403, intron 4 of 5) MIRb|SINE|MIR 100405 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 511-171 chr3 66640469 66640861 + 2 NA Intergenic Intergenic 97671 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 278-320 chr4 143534581 143534809 + 2 NA intron (NM_003601, intron 9 of 23) MER2|DNA|TcMar-Tigger -19858 NR_104027 100128055 Hs.707570 NR_104027 ENSG00000245112 SMARCA5-AS1 - SMARCA5 antisense RNA 1 ncRNA 299-110 chr12 89196626 89196911 + 2 NA Intergenic HAL1|LINE|L1 155733 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 196-127 chr2 67072390 67072518 + 2 NA Intergenic MIR|SINE|MIR -13992 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 507-250 chr8 107722408 107722808 + 2 NA Intergenic L1ME2|LINE|L1 -224690 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 357-58 chr11 24694217 24694494 + 2 NA intron (NM_001252008, intron 1 of 11) L2a|LINE|L2 197302 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 227-198 chr2 229235826 229236022 + 2 NA intron (NM_001330158, intron 1 of 3) intron (NM_001330158, intron 1 of 3) -3832 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 473-43 chr10 124211926 124212276 + 2 NA Intergenic Intergenic -118503 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 237-201 chr2 215560980 215561141 + 2 NA Intergenic Intergenic 107353 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 425-20 chr1 215707176 215707540 + 2 NA intron (NM_206933, intron 61 of 71) MIRb|SINE|MIR 140054 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 172-56 chr2 33724805 33724966 + 2 NA intron (NR_126403, intron 1 of 5) MIR|SINE|MIR 3332 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 515-76 chr15 57892249 57892662 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 121568 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 311-163 chr15 81774808 81775067 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie 271081 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 669-63 chr20 38241705 38242140 + 2 NA exon (NM_001348708, exon 3 of 12) exon (NM_001348708, exon 3 of 12) -18253 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 359-51 chr10 37310832 37311137 + 2 NA intron (NR_104061, intron 1 of 4) intron (NR_104061, intron 1 of 4) 1798 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 313-428 chr5 45361588 45361870 + 2 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 334651 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 404-92 chr14 37967840 37968074 + 2 NA Intergenic Intergenic -65833 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 353-480 chr7 29019458 29019699 + 2 NA intron (NM_001371256, intron 16 of 16) intron (NM_001371256, intron 16 of 16) 39611 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 230-356 chr7 68920184 68920391 + 2 NA Intergenic Intergenic 677337 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 373-427 chr8 139612037 139612395 + 2 NA non-coding (NR_104210, exon 3 of 4) non-coding (NR_104210, exon 3 of 4) 90907 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 487-277 chr7 102876495 102876836 + 2 NA intron (NR_105043, intron 17 of 20) L2c|LINE|L2 -36335 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 314-523 chr7 24919347 24919536 + 2 NA intron (NM_015550, intron 1 of 22) L1MB7|LINE|L1 -26820 NR_104112 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 225-374 chr8 124994347 124994555 + 2 NA Intergenic Intergenic 3747 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 761-57 chr5 120910417 120910963 + 2 NA Intergenic Intergenic 379226 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 321-534 chr7 98671820 98672047 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 54648 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 522-204 chr5 26804489 26804901 + 2 NA Intergenic L1MCa|LINE|L1 233891 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 545-223 chr7 43692836 43693142 + 2 NA intron (NR_163914, intron 1 of 8) MER5B|DNA|hAT-Charlie 36534 NR_135583 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 584-68 chr2 35260088 35260450 + 2 NA Intergenic Intergenic -211136 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 629-120 chr7 86499375 86499948 + 2 NA Intergenic Intergenic -144248 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 604-13 chr10 37324459 37324866 + 2 NA intron (NR_104061, intron 3 of 4) HUERS-P3-int|LTR|ERV1 15476 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 376-32 chr10 2891677 2892013 + 2 NA Intergenic Intergenic 175088 NR_160682 101927824 NR_160681 LOC101927824 - uncharacterized LOC101927824 ncRNA 359-107 chr12 11908699 11908899 + 2 NA Intergenic L1PA17|LINE|L1 -141062 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 753-28 chr17 33131227 33131701 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 138613 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 425-178 chr3 30998547 30998839 + 2 NA Intergenic Intergenic -104032 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 234-137 chr17 66068597 66068730 + 2 NA intron (NM_001353129, intron 9 of 26) intron (NM_001353129, intron 9 of 26) 123229 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 272-48 chr10 58490693 58490850 + 2 NA Intergenic L1MB1|LINE|L1 -22101 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 149-101 chr8 112041726 112041811 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -601725 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 144-91 chr6 64839339 64839434 + 2 NA intron (NM_001292009, intron 19 of 43) intron (NM_001292009, intron 19 of 43) -462032 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 182-77 chr18 62008296 62008448 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -115365 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 380-372 chr7 103000596 103000811 + 2 NA intron (NR_105043, intron 7 of 20) L1M1|LINE|L1 27273 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 286-101 chr13 21663797 21664029 + 2 NA Intergenic L1ME4b|LINE|L1 -7160 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 324-203 chr16 59645084 59645342 + 2 NA Intergenic L1MDa|LINE|L1 109978 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 313-294 chr2 225814363 225814535 + 2 NA Intergenic Intergenic -328345 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 625-72 chr4 33036584 33037169 + 2 NA Intergenic L1M5|LINE|L1 685838 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 249-257 chr3 30059651 30059859 + 2 NA Intergenic MER74B|LTR|ERVL -125599 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 264-336 chr5 118035389 118035579 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -247090 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 215-43 chr10 105280706 105280880 + 2 NA Intergenic Intergenic 539540 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 242-144 chr18 4310776 4310950 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 46261 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 463-256 chr6 85745780 85746159 + 2 NA Intergenic Intergenic -67236 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 429-23 chr1 192451716 192452081 + 2 NA Intergenic Intergenic -123875 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 347-549 chr9 79044034 79044263 + 2 NA Intergenic MIRb|SINE|MIR 101518 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 142-82 chr8 121126399 121126517 + 2 NA Intergenic Intergenic -314412 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 587-29 chr11 84359831 84360190 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -42671 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 314-98 chr11 56467963 56468143 + 2 NA Intergenic L1PA13|LINE|L1 2485 NM_001004742 219482 Hs.553631 NM_001004742 ENSG00000174937 OR5M3 OR11-191 olfactory receptor family 5 subfamily M member 3 protein-coding 278-145 chr16 55562270 55562459 + 2 NA intron (NM_017839, intron 11 of 13) intron (NM_017839, intron 11 of 13) -4320 NM_032330 84290 Hs.660027 NM_032330 ENSG00000256812 CAPNS2 CSS2 calpain small subunit 2 protein-coding 255-132 chr15 91507100 91507333 + 2 NA Intergenic Intergenic 43877 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 345-122 chr12 94898496 94898734 + 2 NA Intergenic Intergenic 64161 NR_036685 160313 Hs.527883 NR_036685 ENSG00000216306 KRT19P2 KRT19P5 keratin 19 pseudogene 2 pseudo 322-554 chr8 139422371 139422620 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 280628 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 237-290 chr5 27100388 27100576 + 2 NA Intergenic Intergenic -61896 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 254-45 chr10 90802649 90802849 + 2 NA intron (NM_019860, intron 1 of 2) HERV35I-int|LTR|ERV1 55290 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 248-40 chr10 59719516 59719694 + 2 NA Intergenic Intergenic -9526 NM_001323977 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 252-46 chr10 62050018 62050216 + 2 NA intron (NM_001244638, intron 1 of 6) intron (NM_001244638, intron 1 of 6) 760 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 253-294 chr4 53083242 53083430 + 2 NA intron (NM_152540, intron 5 of 8) MLT-int|LTR|ERVL-MaLR 221019 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 223-196 chr22 28537324 28537540 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 77563 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 360-332 chr4 86144357 86144627 + 2 NA intron (NR_110879, intron 3 of 3) LTR40A1|LTR|ERVL 24686 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 185-154 chr4 166425668 166425778 + 2 NA Intergenic Intergenic 552486 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 356-30 chr1 222158102 222158364 + 2 NA Intergenic Intergenic -179713 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 161-14 chr10 106332506 106332616 + 2 NA Intergenic Intergenic 192396 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 331-383 chr4 74965195 74965372 + 2 NA intron (NR_121617, intron 3 of 3) intron (NR_121617, intron 3 of 3) 5079 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 204-34 chr10 130661565 130661754 + 2 NA Intergenic Intergenic 301009 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 236-113 chr14 55775435 55775570 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 9257 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 508-108 chr2 105344071 105344550 + 2 NA intron (NM_001286537, intron 4 of 4) intron (NM_001286537, intron 4 of 4) 6770 NM_001286537 79074 Hs.549577 NM_024093 ENSG00000135974 C2orf49 asw chromosome 2 open reading frame 49 protein-coding 354-430 chr7 52178572 52178822 + 2 NA Intergenic Intergenic -785441 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 345-132 chr13 48612447 48612654 + 2 NA Intergenic Intergenic -31649 NR_051983 100129597 Hs.175225 NR_051983 ENSG00000233610 LINC00462 - long intergenic non-protein coding RNA 462 ncRNA 265-229 chr22 41866536 41866731 + 2 NA intron (NR_103834, intron 1 of 21) intron (NR_103834, intron 1 of 21) -31968 NR_157279 112637020 NR_157279 SREBF2-AS1 821D11.7|RP5 SREBF2 antisense RNA 1 ncRNA 307-371 chr5 11071030 11071241 + 2 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -309901 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 743-30 chr18 43968661 43969190 + 2 NA Intergenic L2a|LINE|L2 562772 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 236-353 chr8 76411665 76411837 + 2 NA intron (NR_105006, intron 1 of 5) Charlie1a|DNA|hAT-Charlie 5097 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 269-77 chr11 112643967 112644158 + 2 NA Intergenic Intergenic -88260 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 417-172 chr22 40567429 40567817 + 2 NA intron (NM_020831, intron 2 of 14) intron (NM_020831, intron 2 of 14) -33796 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 562-91 chr19 36775844 36776193 + 2 NA 3' UTR (NM_001294306, exon 2 of 2) 3' UTR (NM_001294306, exon 2 of 2) 2900 NM_001294306 728485 Hs.157101 NM_001294306 LOC728485 - uncharacterized LOC728485 protein-coding 313-290 chr2 205072859 205073029 + 2 NA intron (NM_205863, intron 4 of 21) L2c|LINE|L2 527469 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 355-482 chr7 149708793 149709038 + 2 NA Intergenic L1MEd|LINE|L1 -6096 NM_001290187 84626 Hs.299560 NM_032534 ENSG00000133619 KRBA1 - KRAB-A domain containing 1 protein-coding 325-577 chr9 83618707 83618993 + 2 NA Intergenic Intergenic -4199 NM_001256915 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 309-271 chr2 139961815 139962068 + 2 NA Intergenic Intergenic 624744 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 242-27 chr1 224868637 224868780 + 2 NA Intergenic Intergenic -60946 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 234-131 chr17 35592368 35592544 + 2 NA intron (NM_001030006, intron 1 of 21) AluJr|SINE|Alu 5134 NM_001282 163 Hs.514819 NM_001282 ENSG00000006125 AP2B1 ADTB2|AP105B|AP2-BETA|CLAPB1 adaptor related protein complex 2 subunit beta 1 protein-coding 484-16 chr1 148317077 148317523 + 2 NA Intergenic Intergenic 17254 NR_049810 100847044 NR_049810 ENSG00000283676 MIR5087 - microRNA 5087 ncRNA 231-37 chr10 60536578 60536801 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 36267 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 584-170 chr8 89663243 89663644 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 94268 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 439-284 chr8 87960910 87961288 + 2 NA Intergenic Intergenic -87084 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 200-199 chr5 7524705 7524845 + 2 NA intron (NM_020546, intron 3 of 24) L1MC4|LINE|L1 128637 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 417-250 chr6 150685865 150686125 + 2 NA intron (NM_001329800, intron 1 of 15) intron (NM_001329800, intron 1 of 15) 2348 NM_001329800 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 413-309 chr8 111477746 111478097 + 2 NA Intergenic LTR43-int|LTR|ERV1 101282 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 314-531 chr7 41741257 41741457 + 2 NA intron (NR_027118, intron 2 of 3) MER45A|DNA|hAT-Tip100 -38267 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 376-87 chr12 118943041 118943307 + 2 NA Intergenic Intergenic -38367 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 693-85 chr5 163114273 163114740 + 2 NA Intergenic Intergenic -323065 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 227-140 chr18 4578541 4578730 + 2 NA Intergenic Intergenic -123328 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 316-312 chr20 7330426 7330670 + 2 NA Intergenic Intergenic -16885 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 176-63 chr2 115837546 115837682 + 2 NA intron (NM_001321912, intron 25 of 25) L1MC3|LINE|L1 493799 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 154-83 chr4 119830821 119830939 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -26365 NR_110660 101927007 Hs.143958 NR_110660 ENSG00000250772 LINC01365 - long intergenic non-protein coding RNA 1365 ncRNA 482-159 chr3 13822015 13822293 + 2 NA intron (NM_004625, intron 3 of 3) L1MB7|LINE|L1 57917 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 278-209 chr2 56121628 56121882 + 2 NA Intergenic Intergenic -31373 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 352-332 chr3 141143215 141143557 + 2 NA intron (NM_080862, intron 2 of 2) L1PBa|LINE|L1 -88439 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 119-28 chr2 35095555 35095648 + 2 NA Intergenic Intergenic -375804 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 748-72 chr5 95408964 95409386 + 2 NA intron (NM_152548, intron 3 of 9) AluSz|SINE|Alu 17809 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 219-160 chr2 13883263 13883457 + 2 NA Intergenic L1MA3|LINE|L1 517598 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 417-212 chr5 27653020 27653326 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 180881 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 331-31 chr1 196385306 196385526 + 2 NA intron (NM_001287820, intron 13 of 26) Tigger3a|DNA|TcMar-Tigger 197065 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 326-360 chr3 172501509 172501768 + 2 NA Intergenic L1M4c|LINE|L1 21792 NM_001190942 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL TNF superfamily member 10 protein-coding 272-420 chr7 54617789 54617970 + 2 NA Intergenic Intergenic 60909 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 234-210 chr20 20171381 20171611 + 2 NA intron (NM_015585, intron 13 of 26) Charlie4a|DNA|hAT-Charlie 114850 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 207-181 chr3 3295379 3295553 + 2 NA Intergenic L1PA16|LINE|L1 -115749 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 178-48 chr15 33420885 33421007 + 2 NA intron (NM_001243996, intron 1 of 102) L2b|LINE|L2 109979 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 520-46 chr11 21414936 21415314 + 2 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 745539 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 339-228 chr18 27956434 27956639 + 2 NA intron (NM_001308176, intron 14 of 14) L2|LINE|L2 80105 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 243-328 chr4 79821417 79821616 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -5955 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 275-47 chr10 65180978 65181203 + 2 NA Intergenic L1MC3|LINE|L1 -256572 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 230-250 chr3 187333484 187333701 + 2 NA Intergenic Intergenic -34793 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 947-15 chr2 80208758 80209498 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 95624 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 157-14 chr1 234628573 234628675 + 2 NA promoter-TSS (NR_033927) promoter-TSS (NR_033927) -687 NR_033927 100302691 Hs.209162 NR_033927 ENSG00000224939 LINC00184 HANC|NCRNA00184 long intergenic non-protein coding RNA 184 ncRNA 577-111 chr22 27553846 27554291 + 2 NA Intergenic AluSz|SINE|Alu 243417 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 358-469 chr8 62378274 62378457 + 2 NA intron (NM_001304533, intron 1 of 6) THE1D-int|LTR|ERVL-MaLR 129511 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 284-115 chr14 52601335 52601569 + 2 NA intron (NM_001099652, intron 3 of 6) intron (NM_001099652, intron 3 of 6) 48616 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 490-57 chr11 74867020 74867367 + 2 NA intron (NM_001270381, intron 8 of 15) L1PA14|LINE|L1 81898 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 295-15 chr1 118968148 118968336 + 2 NA intron (NM_152380, intron 1 of 7) AluSz|SINE|Alu 20101 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 665-79 chr5 110616420 110616954 + 2 NA intron (NM_001039763, intron 8 of 13) L1MA7|LINE|L1 -102772 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 266-127 chr15 56770199 56770409 + 2 NA Intergenic LTR84a|LTR|ERVL -36218 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 509-114 chr2 115576147 115576506 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 232511 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 576-105 chr3 26238799 26239145 + 2 NA Intergenic MIR3|SINE|MIR -365277 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 382-313 chr5 9637236 9637581 + 2 NA Intergenic L1PB2|LINE|L1 -7057 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 398-173 chr2 123229892 123230094 + 2 NA Intergenic L1PBa|LINE|L1 -156512 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 303-188 chr19 51945713 51945909 + 2 NA 3' UTR (NM_024840, exon 6 of 6) 3' UTR (NM_024840, exon 6 of 6) -3323 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 310-468 chr7 7060965 7061145 + 2 NA Intergenic SATR1|Satellite|Satellite 5990 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 246-411 chr8 111002691 111002920 + 2 NA intron (NR_125416, intron 4 of 4) L1MC1|LINE|L1 24628 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 398-217 chr3 124558975 124559320 + 2 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -25511 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 535-139 chr2 174760899 174761290 + 2 NA intron (NM_001039523, intron 1 of 9) intron (NM_001039523, intron 1 of 9) 3378 NM_000079 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 416-65 chr11 37422156 37422522 + 2 NA Intergenic Intergenic -516262 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 397-182 chr20 1947872 1948187 + 2 NA intron (NR_134520, intron 1 of 3) MIR|SINE|MIR 819 NR_134520 727993 Hs.551466 NR_134520 ENSG00000233896 PDYN-AS1 - PDYN antisense RNA 1 ncRNA 470-52 chr12 42732189 42732503 + 2 NA Intergenic Intergenic 40130 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 246-381 chr7 104523326 104523552 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 194783 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 335-584 chrX 77495240 77495433 + 2 NA Intergenic L1PA8A|LINE|L1 47947 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 251-404 chr8 126782125 126782326 + 2 NA Intergenic Intergenic -223747 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 501-169 chr3 84027500 84027902 + 2 NA Intergenic L2a|LINE|L2 841874 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 339-112 chr11 114912457 114912776 + 2 NA Intergenic L1PB4|LINE|L1 234089 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 291-252 chr2 239429372 239429651 + 2 NA Intergenic Intergenic 27763 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 353-492 chr7 78608393 78608622 + 2 NA intron (NM_001301128, intron 3 of 20) (TA)n|Simple_repeat|Simple_repeat 261265 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 252-456 chrX 58183350 58183541 + 2 NA Intergenic ALR/Alpha|Satellite|centr -272812 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 321-271 chr19 53678228 53678450 + 2 NA promoter-TSS (NR_030184) promoter-TSS (NR_030184) -664 NR_030184 574462 NR_030184 ENSG00000207616 MIR515-1 MIRN515-1 microRNA 515-1 ncRNA 276-175 chr16 5939421 5939591 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -79518 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 365-216 chr2 181394877 181395209 + 2 NA intron (NR_130784, intron 4 of 4) LTR33|LTR|ERVL -61849 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 337-179 chr15 68533616 68533810 + 2 NA intron (NM_001324014, intron 1 of 12) intron (NM_001324014, intron 1 of 12) 15340 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 446-48 chr10 67286599 67286865 + 2 NA intron (NM_001127384, intron 5 of 17) MamGypsy2-LTR|LTR|Gypsy 116678 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 320-24 chr1 157224482 157224712 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 -86006 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 235-240 chr3 168113312 168113507 + 2 NA Intergenic MIRc|SINE|MIR -17485 NM_014498 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 758-14 chr11 4979240 4979755 + 2 NA Intergenic HERV16-int|LTR|ERVL -8694 NM_021801 56547 Hs.204732 NM_021801 ENSG00000167346 MMP26 - matrix metallopeptidase 26 protein-coding 422-89 chr14 84226843 84227234 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -1044894 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 580-66 chr18 13545199 13545613 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -65708 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 435-157 chr3 121202181 121202486 + 2 NA intron (NM_001348343, intron 9 of 27) L1MB8|LINE|L1 152693 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 319-270 chr2 167798656 167798861 + 2 NA Intergenic L1PA11|LINE|L1 -19914 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 223-257 chr4 128372112 128372273 + 2 NA Intergenic MIRb|SINE|MIR -55824 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 238-200 chr20 12875676 12875879 + 2 NA intron (NR_109868, intron 10 of 11) intron (NR_109868, intron 10 of 11) 61186 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 386-12 chr1 114931269 114931541 + 2 NA intron (NM_001282542, intron 23 of 30) L1M4a2|LINE|L1 76542 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 314-264 chr2 19778565 19778763 + 2 NA Intergenic Intergenic -90190 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 321-592 chr9 27250017 27250190 + 2 NA intron (NR_026679, intron 15 of 16) intron (NR_026679, intron 15 of 16) 32690 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 604-12 chr10 33948580 33949132 + 2 NA Intergenic AluJr|SINE|Alu -176176 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 443-40 chr10 76616382 76616719 + 2 NA Intergenic L1P4|LINE|L1 -271494 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 346-108 chr12 78814994 78815327 + 2 NA Intergenic L1MC|LINE|L1 -48822 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 297-131 chr14 49545728 49546018 + 2 NA Intergenic Intergenic 40507 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 231-102 chr14 83249926 83250086 + 2 NA Intergenic Intergenic 607374 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 201-207 chr5 125086528 125086708 + 2 NA intron (NR_109882, intron 2 of 5) MER21C|LTR|ERVL 49787 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 316-141 chr12 110156409 110156670 + 2 NA intron (NM_031473, intron 10 of 11) AluSz|SINE|Alu 32182 NR_144951 28981 Hs.528382 NM_014055 ENSG00000122970 IFT81 CDV-1|CDV-1R|CDV1|CDV1R|DV1|SRTD19 intraflagellar transport 81 protein-coding 492-102 chr16 5297287 5297702 + 2 NA Intergenic L1MA8|LINE|L1 -199674 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 307-249 chr2 132749139 132749393 + 2 NA intron (NM_207481, intron 14 of 17) AluJb|SINE|Alu -77740 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 285-261 chr3 28552096 28552329 + 2 NA Intergenic L1PA13|LINE|L1 -23066 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 581-84 chr2 139756116 139756483 + 2 NA Intergenic L1MA1|LINE|L1 830386 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 266-115 chr14 57546361 57546584 + 2 NA Intergenic Intergenic -52615 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 414-92 chr14 85014324 85014633 + 2 NA Intergenic L1M2|LINE|L1 -257454 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 519-208 chr7 9995285 9995703 + 2 NA Intergenic L2a|LINE|L2 361224 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 279-380 chr6 168010272 168010446 + 2 NA Intergenic L1M2c|LINE|L1 -7514 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 304-261 chr2 98044408 98044622 + 2 NA Intergenic L1MDa|LINE|L1 -42652 NR_144297 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 148-67 chr4 124987547 124987670 + 2 NA Intergenic Intergenic -274876 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 641 chr1 34329492 34329843 + 2 NA Intergenic L1ME3G|LINE|L1 152760 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 241-337 chr6 103334929 103335066 + 2 NA Intergenic L1M4b|LINE|L1 1524549 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 343-83 chr11 110040104 110040299 + 2 NA Intergenic Intergenic -53191 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 322-218 chr18 48198888 48199153 + 2 NA intron (NM_001371285, intron 1 of 5) HAL1|LINE|L1 -5094 NM_001371288 390-397 chr8 131072678 131072909 + 2 NA Intergenic LTR16|LTR|ERVL -31884 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 297-522 chrX 25851895 25852095 + 2 NA Intergenic Intergenic -286348 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 200-25 chr1 238791386 238791579 + 2 NA Intergenic L1MEf|LINE|L1 -305465 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 540-84 chr16 7490908 7491255 + 2 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 158236 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 287-366 chr6 137562674 137562933 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -68409 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 215-10 chr1 160160682 160160877 + 2 NA intron (NM_144699, intron 6 of 21) intron (NM_144699, intron 6 of 21) 9217 NM_144699 480 Hs.662219 NM_144699 ENSG00000132681 ATP1A4 ATP1A1|ATP1AL2 ATPase Na+/K+ transporting subunit alpha 4 protein-coding 340-289 chr2 162646086 162646316 + 2 NA intron (NM_033272, intron 2 of 15) Plat_L3|LINE|CR1 -122735 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 416-346 chr8 141630332 141630602 + 2 NA Intergenic Intergenic -123237 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 150-87 chr5 11660727 11660860 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -71727 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 258-195 chr2 114717895 114718104 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 115549 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 319-397 chr5 11784342 11784585 + 2 NA intron (NM_001288717, intron 1 of 20) MLT1E1|LTR|ERVL-MaLR 119983 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 275-365 chr8 111554690 111554856 + 2 NA Intergenic Intergenic 178134 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 266-458 chrX 66867988 66868248 + 2 NA Intergenic Intergenic -228820 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 286-188 chr2 13209450 13209703 + 2 NA Intergenic L1MC4|LINE|L1 -202563 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 333-3 chr1 33759040 33759222 + 2 NA intron (NM_052896, intron 13 of 69) L2a|LINE|L2 -101344 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 113-14 chr13 50660669 50660771 + 2 NA Intergenic L1ME1|LINE|L1 -133271 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 504-2 chr1 79589197 79589557 + 2 NA Intergenic Intergenic -582647 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 562-229 chr9 124172250 124172638 + 2 NA Intergenic L1MEg|LINE|L1 -85162 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 274-85 chr11 109375158 109375318 + 2 NA Intergenic Intergenic -46952 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 545-103 chr19 56898345 56898708 + 2 NA Intergenic AluSq2|SINE|Alu 57624 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 465-200 chr4 61974393 61974735 + 2 NA intron (NM_001371343, intron 16 of 23) MIRc|SINE|MIR 187201 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 435-193 chr5 57089014 57089285 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -84799 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 393-177 chr2 170194480 170194695 + 2 NA intron (NM_001083615, intron 1 of 33) HAL1b|LINE|L1 16440 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 482-158 chr3 11079622 11080073 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -57391 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 284-217 chr2 177549655 177549841 + 2 NA 3' UTR (NM_152517, exon 1 of 1) 3' UTR (NM_152517, exon 1 of 1) 3048 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 126-14 chr12 9857291 9857374 + 2 NA intron (NM_005127, intron 3 of 4) L3|LINE|CR1 12527 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 544-159 chr4 36945090 36945509 + 2 NA Intergenic Intergenic -56480 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 333-565 chr8 64136657 64136860 + 2 NA intron (NR_125826, intron 3 of 4) intron (NR_125826, intron 3 of 4) 231800 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 348-265 chr20 39434253 39434554 + 2 NA Intergenic LTR33|LTR|ERVL -209655 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 263-97 chr14 38945932 38946139 + 2 NA Intergenic Intergenic -29153 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 368-212 chr18 73213418 73213686 + 2 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 50946 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 268-187 chr2 35335005 35335204 + 2 NA Intergenic MER65-int|LTR|ERV1 -136301 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 363-97 chr12 21418849 21419060 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -18701 NM_001350913 79912 Hs.709545 NM_024854 ENSG00000121350 PYROXD1 MFM8 pyridine nucleotide-disulphide oxidoreductase domain 1 protein-coding 315-481 chr8 89574714 89574953 + 2 NA Intergenic L1MD1|LINE|L1 182878 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 437-26 chr10 66141409 66141692 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 570125 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 338-106 chr11 83765749 83766028 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -83463 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 316-91 chr11 22056520 22056704 + 2 NA Intergenic L1PA11|LINE|L1 -136473 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 234-313 chr5 68573210 68573414 + 2 NA Intergenic L1M7|LINE|L1 280735 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 560-111 chr3 43123940 43124377 + 2 NA Intergenic L1MEg|LINE|L1 -18079 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 385-273 chr4 79490620 79490838 + 2 NA Intergenic L1PBa|LINE|L1 -1864 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 490-210 chr4 179481136 179481616 + 2 NA Intergenic Intergenic -1573440 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 296-358 chr5 25605055 25605246 + 2 NA Intergenic L1M4|LINE|L1 414197 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 257-137 chr16 63046823 63047022 + 2 NA Intergenic AluSz6|SINE|Alu -1010484 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 836-23 chr15 36010595 36011109 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 83996 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 324-161 chr14 66160490 66160765 + 2 NA Intergenic L2b|LINE|L2 -325744 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 337-129 chr13 38961158 38961365 + 2 NA Intergenic LTR16C|LTR|ERVL 29570 NM_145286 161003 Hs.327794 NM_145286 ENSG00000133115 STOML3 Epb7.2l|SRO stomatin like 3 protein-coding 397-272 chr5 171815048 171815419 + 2 NA Intergenic Intergenic 29361 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 293-173 chr19 55918370 55918545 + 2 NA intron (NM_176810, intron 4 of 10) L1PB4|LINE|L1 13879 NM_001321057 126204 Hs.446924 NM_176810 ENSG00000173572 NLRP13 CLR19.7|NALP13|NOD14|PAN13 NLR family pyrin domain containing 13 protein-coding 243-262 chr21 25303938 25304084 + 2 NA Intergenic Intergenic 127690 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 569-134 chr4 72753265 72753587 + 2 NA Intergenic L1PA13|LINE|L1 -184205 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 333-611 chr9 113140071 113140391 + 2 NA Intergenic Intergenic -10776 NM_001860 1318 Hs.24030 NM_001860 ENSG00000136867 SLC31A2 COPT2|CTR2|hCTR2 solute carrier family 31 member 2 protein-coding 282-137 chr14 82159159 82159332 + 2 NA Intergenic L1MC4a|LINE|L1 -416107 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 183-22 chr11 39510893 39511020 + 2 NA Intergenic HAL1|LINE|L1 782174 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 316-234 chr19 32272693 32272924 + 2 NA Intergenic Intergenic -72802 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 289-18 chr1 147212774 147213020 + 2 NA intron (NM_001461, intron 4 of 8) intron (NM_001461, intron 4 of 8) 12442 NM_001461 2330 Hs.642706 NM_001461 ENSG00000131781 FMO5 - flavin containing dimethylaniline monoxygenase 5 protein-coding 582-172 chrX 51288727 51289125 + 2 NA Intergenic L2a|LINE|L2 -43305 NM_153183 170685 Hs.375178 NM_153183 ENSG00000122824 NUDT10 APS2|DIPP3-alpha|DIPP3a nudix hydrolase 10 protein-coding 394-286 chr6 63035810 63036091 + 2 NA Intergenic Intergenic 284027 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 362-9 chr1 50575776 50575999 + 2 NA intron (NM_007051, intron 12 of 18) intron (NM_007051, intron 12 of 18) -152444 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 290-77 chr11 57370381 57370577 + 2 NA 3' UTR (NM_002559, exon 12 of 12) 3' UTR (NM_002559, exon 12 of 12) 10671 NM_006093 10394 Hs.251386 NM_006093 ENSG00000156575 PRG3 MBP2|MBPH proteoglycan 3, pro eosinophil major basic protein 2 protein-coding 300-382 chr6 2057514 2057784 + 2 NA intron (NM_001253846, intron 4 of 10) intron (NM_001253846, intron 4 of 10) 118342 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 408-12 chr1 75656082 75656343 + 2 NA Intergenic L1MA4|LINE|L1 -40049 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 365-204 chr2 126202246 126202442 + 2 NA Intergenic Intergenic -84359 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 223-188 chr20 58371509 58371649 + 2 NA Intergenic Intergenic -17540 NM_004738 9217 Hs.182625 NM_004738 ENSG00000124164 VAPB ALS8|VAMP-B|VAP-B VAMP associated protein B and C protein-coding 205-139 chr2 72463770 72463948 + 2 NA intron (NM_001321729, intron 18 of 22) MLT1A0|LTR|ERVL-MaLR -315997 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 219-166 chr2 50614194 50614343 + 2 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 81994 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 280-282 chr4 48111951 48112142 + 2 NA intron (NM_003328, intron 4 of 14) MIRb|SINE|MIR 22204 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 328-227 chr18 61680446 61680616 + 2 NA Intergenic AluJb|SINE|Alu -67645 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 378-44 chr1 239035872 239036110 + 2 NA Intergenic L1ME1|LINE|L1 -350577 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 437-116 chr19 29166577 29166895 + 2 NA Intergenic L1ME2|LINE|L1 46415 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 300-127 chr15 27509948 27510132 + 2 NA intron (NM_033223, intron 6 of 9) L1MCa|LINE|L1 -348721 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 311-282 chr2 212162331 212162505 + 2 NA intron (NM_001042599, intron 1 of 26) L1ME2z|LINE|L1 263942 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 321-215 chr16 52668422 52668735 + 2 NA Intergenic MIRb|SINE|MIR -61603 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 218-202 chr22 31372314 31372447 + 2 NA Intergenic Intergenic 25621 NR_120386 54944 Hs.648259 NM_017834 LINC01521 - long intergenic non-protein coding RNA 1521 ncRNA 372-142 chr14 61961932 61962200 + 2 NA intron (NM_001367663, intron 1 of 7) L1PA15|LINE|L1 34371 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 814-6 chr10 26175251 26175834 + 2 NA intron (NM_017433, intron 30 of 34) intron (NM_017433, intron 30 of 34) -40765 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 615-45 chr15 57223956 57224351 + 2 NA intron (NM_207040, intron 1 of 12) intron (NM_207040, intron 1 of 12) 4723 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 302-326 chr4 77093829 77094010 + 2 NA Intergenic AluSz6|SINE|Alu -17930 NM_006835 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 170-88 chr22 28293882 28294028 + 2 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -165914 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 512-61 chr12 26737244 26737610 + 2 NA intron (NM_002223, intron 2 of 56) AluSg|SINE|Alu 95767 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 487-273 chr7 62790086 62790476 + 2 NA Intergenic ALR/Alpha|Satellite|centr 513775 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 225-246 chr4 66743940 66744104 + 2 NA Intergenic L1MEc|LINE|L1 467198 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 354-307 chr3 131479202 131479532 + 2 NA promoter-TSS (NR_002985) promoter-TSS (NR_002985) -134 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58|SNORA58B small nucleolar RNA, H/ACA box 58 snoRNA 340-181 chr15 100188659 100188927 + 2 NA intron (NM_139057, intron 8 of 21) intron (NM_139057, intron 8 of 21) 153182 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 205-82 chr14 51315872 51316019 + 2 NA intron (NR_145423, intron 1 of 1) L2c|LINE|L2 12440 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 367-179 chr18 71946226 71946563 + 2 NA Intergenic Intergenic -164168 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 368-215 chr19 27911941 27912173 + 2 NA intron (NR_146735, intron 4 of 7) intron (NR_146735, intron 4 of 7) -118117 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 299-426 chr7 77218166 77218328 + 2 NA intron (NM_020879, intron 2 of 18) (ATTTATA)n|Simple_repeat|Simple_repeat -18428 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 363-142 chr14 71448277 71448507 + 2 NA intron (NM_001284247, intron 1 of 23) MIR|SINE|MIR 9453 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 646-58 chr2 44062492 44062867 + 2 NA Intergenic AluSz|SINE|Alu -66690 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 216-334 chr8 82801350 82801539 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -110660 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 383-85 chr12 76992884 76993083 + 2 NA Intergenic AluJb|SINE|Alu 72586 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 274-154 chr16 72233350 72233528 + 2 NA Intergenic Intergenic -60989 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 243-169 chr17 70633613 70633844 + 2 NA Intergenic L1ME1|LINE|L1 464193 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 181-131 chr5 134987397 134987526 + 2 NA intron (NM_178019, intron 2 of 7) L1MB4|LINE|L1 19554 NM_178019 347732 Hs.631804 NM_178019 ENSG00000152705 CATSPER3 CACRC cation channel sperm associated 3 protein-coding 142-80 chr8 87189394 87189496 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 323030 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 305-106 chr11 109292579 109292795 + 2 NA Intergenic L1MA4A|LINE|L1 -129503 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 308-180 chr17 32224747 32225047 + 2 NA non-coding (NR_110083, exon 21 of 21) non-coding (NR_110083, exon 21 of 21) -40935 NM_001330181 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 396-302 chr5 163463318 163463585 + 2 NA intron (NM_001142557, intron 1 of 14) intron (NM_001142557, intron 1 of 14) 2819 NM_012484 3161 Hs.740467 NM_012484 ENSG00000072571 HMMR CD168|IHABP|RHAMM hyaluronan mediated motility receptor protein-coding 268-261 chr3 178913574 178913833 + 2 NA Intergenic Intergenic -53298 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 377-77 chr11 120943810 120944127 + 2 NA intron (NR_133004, intron 2 of 2) intron (NR_133004, intron 2 of 2) 14071 NR_133004 101929208 Hs.662310 NR_133004 LOC101929208 - uncharacterized LOC101929208 ncRNA 521-179 chr4 81299634 81300097 + 2 NA Intergenic Intergenic -84643 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 316-80 chr10 107319973 107320202 + 2 NA Intergenic Intergenic -155381 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 413-14 chr1 115157665 115157952 + 2 NA Intergenic L1ME3Cz|LINE|L1 -68305 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 314-37 chr1 193890860 193891166 + 2 NA Intergenic Intergenic 586268 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 464-138 chr2 182711445 182711809 + 2 NA Intergenic L1MC4|LINE|L1 -4630 NR_073365 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 389-87 chr12 114072616 114072838 + 2 NA Intergenic LTR10F|LTR|ERV1 -106402 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 238-408 chr9 1976325 1976461 + 2 NA Intergenic Intergenic -38954 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 265-28 chr10 22072955 22073149 + 2 NA Intergenic L1MEd|LINE|L1 -69322 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 279-305 chr4 180104829 180104989 + 2 NA Intergenic Intergenic 1054240 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 296-270 chr20 51846070 51846232 + 2 NA intron (NR_110016, intron 1 of 2) intron (NR_110016, intron 1 of 2) 16762 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 332-338 chr3 110971761 110972007 + 2 NA Intergenic Intergenic 98075 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 189-201 chr8 52385199 52385355 + 2 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) 24479 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 560-102 chr20 48004203 48004623 + 2 NA Intergenic L2c|LINE|L2 -14296 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 263-175 chr18 72301737 72301959 + 2 NA Intergenic Intergenic 242494 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 743-34 chr2 53835422 53836046 + 2 NA intron (NM_001164165, intron 1 of 9) AluY|SINE|Alu 13471 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 214-311 chr7 145304301 145304469 + 2 NA Intergenic Intergenic -468332 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 412-141 chr19 27363836 27364204 + 2 NA Intergenic ALR/Alpha|Satellite|centr -429411 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 367-450 chr8 83396528 83396766 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -7111 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 357-433 chr8 59787825 59788063 + 2 NA Intergenic MER34-int|LTR|ERV1 493456 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 353-459 chr6 93708730 93708943 + 2 NA intron (NR_015362, intron 1 of 9) intron (NR_015362, intron 1 of 9) 1834 NR_015362 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 290-283 chr3 73899008 73899293 + 2 NA Intergenic Intergenic 89906 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 247-32 chr10 14414794 14415014 + 2 NA Intergenic Intergenic -21672 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 726-23 chr13 96325419 96326014 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) -101513 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 305-52 chr1 246590725 246590954 + 2 NA intron (NM_001139459, intron 1 of 8) intron (NM_001139459, intron 1 of 8) 24383 NM_152609 163882 Hs.368353 NM_152609 ENSG00000162852 CNST C1orf71|PPP1R64 consortin, connexin sorting protein protein-coding 233-46 chr10 90142535 90142732 + 2 NA Intergenic Intergenic -185260 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 182-33 chr11 125810569 125810697 + 2 NA Intergenic Intergenic 22506 NM_001129883 100169851 Hs.131278 NM_001129883 ENSG00000236027 PATE3 HEL-127|PATE-DJ prostate and testis expressed 3 protein-coding 507-51 chr11 50685765 50686124 + 2 NA Intergenic ALR/Alpha|Satellite|centr 276797 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 434-101 chr16 52163588 52163931 + 2 NA Intergenic L1ME3C|LINE|L1 78478 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 321-48 chr10 20889811 20890007 + 2 NA exon (NM_006393, exon 3 of 28) exon (NM_006393, exon 3 of 28) 7693 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 282-497 chrX 27019423 27019631 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 443814 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 285-39 chr10 61467151 61467384 + 2 NA intron (NR_120643, intron 1 of 5) intron (NR_120643, intron 1 of 5) -12774 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 230-86 chr12 80965110 80965258 + 2 NA Intergenic L2b|LINE|L2 -27269 NM_004664 8825 Hs.144333 NM_004664 ENSG00000111052 LIN7A LIN-7A|LIN7|MALS-1|MALS1|TIP-33|VELI1 lin-7 homolog A, crumbs cell polarity complex component protein-coding 334-469 chr6 123084039 123084333 + 2 NA Intergenic Intergenic 87951 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 534-41 chr11 25456367 25456842 + 2 NA Intergenic Intergenic -732519 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 239-103 chr14 62072350 62072534 + 2 NA intron (NM_001367661, intron 5 of 8) intron (NM_001367661, intron 5 of 8) -44915 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 368-397 chr6 82686394 82686635 + 2 NA Intergenic Intergenic 322270 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 293-253 chr3 13137444 13137661 + 2 NA Intergenic Intergenic -64123 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 163-23 chr11 23436637 23436740 + 2 NA Intergenic L1M1|LINE|L1 -17498 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 247-244 chr21 24069729 24069886 + 2 NA Intergenic Intergenic 251570 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 477-263 chr7 97045349 97045610 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -20648 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 354-259 chr20 40389035 40389295 + 2 NA Intergenic Intergenic 300071 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 224-309 chr8 9396265 9396440 + 2 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat 71301 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 273-192 chr18 75893459 75893660 + 2 NA Intergenic Intergenic -181156 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 271-326 chr4 170217090 170217294 + 2 NA Intergenic Intergenic -9399 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 400-125 chr17 30405483 30405861 + 2 NA intron (NM_001304, intron 2 of 20) L1MC5|LINE|L1 25194 NM_001199775 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 302-485 chr9 30635660 30635827 + 2 NA Intergenic L1MC3|LINE|L1 -227289 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 513-179 chr3 68237830 68238250 + 2 NA intron (NM_001252216, intron 2 of 4) LTR31|LTR|ERV1 233793 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 417-40 chr10 73453159 73453558 + 2 NA intron (NM_001142353, intron 10 of 13) intron (NM_001142353, intron 10 of 13) -19797 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 224-13 chr1 102263806 102263975 + 2 NA Intergenic Intergenic -266656 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 443-104 chr15 58097560 58097831 + 2 NA Intergenic L1MB7|LINE|L1 -31772 NM_001206897 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 269-5 chr1 40509221 40509426 + 2 NA intron (NM_001346946, intron 1 of 2) intron (NM_001346946, intron 1 of 2) 604 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 531-260 chr9 16235833 16236205 + 2 NA intron (NM_001364979, intron 1 of 3) intron (NM_001364979, intron 1 of 3) 17088 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 277-463 chrX 71622115 71622295 + 2 NA Intergenic MIR|SINE|MIR -3694 NM_001142797 2833 Hs.198252 NM_001504 ENSG00000186810 CXCR3 CD182|CD183|CKR-L2|CMKAR3|GPR9|IP10-R|Mig-R|MigR C-X-C motif chemokine receptor 3 protein-coding 197-2 chr1 33551615 33551771 + 2 NA intron (NM_052896, intron 54 of 69) MLT1G1|LTR|ERVL-MaLR 79048 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 214-189 chr21 14257247 14257412 + 2 NA Intergenic MLT2C2|LTR|ERVL -16470 NR_003087 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 416-186 chr2 172589413 172589756 + 2 NA intron (NM_002610, intron 9 of 10) LTR33|LTR|ERVL 33494 NM_002610 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 295-247 chr2 224140083 224140343 + 2 NA Intergenic L1PREC2|LINE|L1 -100894 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 392-284 chr6 122832222 122832430 + 2 NA Intergenic Intergenic 43068 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 642-46 chr18 64948758 64949266 + 2 NA Intergenic MER66-int|LTR|ERV1 -688957 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 352-63 chr10 114295495 114295793 + 2 NA 3' UTR (NM_001287824, exon 20 of 20) 3' UTR (NM_001287824, exon 20 of 20) 56030 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 411-139 chr2 28480586 28480989 + 2 NA Intergenic Intergenic -15273 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 192-224 chr9 138021969 138022107 + 2 NA intron (NM_001243812, intron 18 of 45) intron (NM_001243812, intron 18 of 45) 23033 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 241-19 chr1 154583674 154583847 + 2 NA 3' UTR (NM_001193495, exon 15 of 15) 3' UTR (NM_001193495, exon 15 of 15) 15982 NM_000748 1141 Hs.2306 NM_000748 ENSG00000160716 CHRNB2 EFNL3|nAChRB2 cholinergic receptor nicotinic beta 2 subunit protein-coding 224-33 chr10 59016932 59017128 + 2 NA Intergenic Intergenic 17512 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 187-50 chr14 85408838 85408966 + 2 NA intron (NR_102737, intron 2 of 2) MIRb|SINE|MIR 14987 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 320-22 chr1 119270525 119270787 + 2 NA intron (NR_125975, intron 6 of 6) L1ME3|LINE|L1 -57596 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 362-323 chr4 157335445 157335666 + 2 NA intron (NM_001083620, intron 9 of 15) intron (NM_001083620, intron 9 of 15) 114827 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 418-51 chr12 15841882 15842244 + 2 NA Intergenic Intergenic -40324 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 327-427 chr5 166608547 166608768 + 2 NA Intergenic L1PA16|LINE|L1 317713 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 513-186 chr3 96347461 96347843 + 2 NA Intergenic L1ME1|LINE|L1 -12312 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 196-114 chr2 21563152 21563265 + 2 NA Intergenic L1MA5A|LINE|L1 147444 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 223-44 chr10 107094132 107094307 + 2 NA intron (NM_001206569, intron 1 of 25) L2a|LINE|L2 70487 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 220-322 chr6 120859871 120860080 + 2 NA Intergenic L1MA8|LINE|L1 474505 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 368-120 chr12 129881312 129881579 + 2 NA intron (NM_133448, intron 1 of 8) L1ME1|LINE|L1 22580 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 278-112 chr14 56661825 56662065 + 2 NA Intergenic Intergenic 82147 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 190-128 chr3 161699894 161700062 + 2 NA Intergenic Intergenic 203170 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 318-75 chr10 81520101 81520322 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -354983 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 467-289 chr8 137483479 137483807 + 2 NA Intergenic Intergenic -70055 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 337-545 chr8 108067406 108067683 + 2 NA intron (NM_178565, intron 2 of 5) L1MC5a|LINE|L1 14395 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 312-23 chr1 165245303 165245491 + 2 NA intron (NM_177398, intron 4 of 8) intron (NM_177398, intron 4 of 8) 110844 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 141-5 chr1 176134020 176134105 + 2 NA intron (NM_022457, intron 8 of 19) intron (NM_022457, intron 8 of 19) 73182 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 341-132 chr13 50577336 50577608 + 2 NA Intergenic Intergenic -50023 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 270-255 chr4 30552850 30553048 + 2 NA Intergenic Intergenic -167420 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 609-122 chr7 3115531 3115971 + 2 NA Intergenic Intergenic 42822 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 473-251 chr6 159467573 159468004 + 2 NA Intergenic Intergenic 84257 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 264-451 chrX 66675984 66676134 + 2 NA Intergenic Intergenic -36761 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 510-78 chr14 78141938 78142284 + 2 NA Intergenic Intergenic -28262 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 271-321 chr4 100984520 100984744 + 2 NA Intergenic L1MC5|LINE|L1 256240 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 685-39 chr19 29868183 29868564 + 2 NA Intergenic MIR|SINE|MIR -55284 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 793-4 chr10 20876814 20877494 + 2 NA intron (NM_006393, intron 5 of 27) intron (NM_006393, intron 5 of 27) 20448 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 303-320 chr4 80104601 80104862 + 2 NA Intergenic Intergenic -31259 NM_001286780 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 685-34 chr17 34684653 34685182 + 2 NA Intergenic L3|LINE|CR1 104168 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 335-260 chr2 123594851 123595041 + 2 NA Intergenic Intergenic 430228 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 459-151 chr2 152690311 152690709 + 2 NA intron (NM_001365601, intron 5 of 24) AluSz6|SINE|Alu 26951 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 321-92 chr11 24790074 24790348 + 2 NA intron (NM_001252010, intron 5 of 9) L2|LINE|L2 293158 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 293-185 chr2 57210787 57210959 + 2 NA Intergenic Intergenic -696778 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 131-52 chr3 155292989 155293069 + 2 NA intron (NM_001352129, intron 1 of 2) MIR|SINE|MIR 654 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 193-27 chr10 30739671 30739831 + 2 NA Intergenic MER21C|LTR|ERVL 16532 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 670-9 chr1 235562488 235563070 + 2 NA intron (NM_004485, intron 2 of 2) L1MEg|LINE|L1 -58327 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 857-17 chr12 37901175 37901835 + 2 NA Intergenic ALR/Alpha|Satellite|centr -415269 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 374-344 chr6 124705682 124706028 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -256690 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 129-4 chr10 18549621 18549688 + 2 NA intron (NM_182543, intron 9 of 10) L2a|LINE|L2 101933 NM_001351115 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 382-173 chr2 20883727 20884016 + 2 NA Intergenic L1MB3|LINE|L1 -60741 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 209-114 chr16 6437211 6437388 + 2 NA intron (NM_018723, intron 2 of 15) (ATTTA)n|Simple_repeat|Simple_repeat -336510 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 230-277 chr4 154747570 154747758 + 2 NA intron (NM_001301645, intron 2 of 2) intron (NM_001301645, intron 2 of 2) 3664 NM_004744 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 278-60 chr11 120850746 120850967 + 2 NA intron (NM_001282470, intron 7 of 19) intron (NM_001282470, intron 7 of 19) -31741 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 351-150 chr15 96393068 96393368 + 2 NA Intergenic Intergenic 59453 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 298-219 chr2 79723510 79723762 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -74277 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 407-43 chr11 4982736 4983017 + 2 NA Intergenic Intergenic -5315 NM_021801 56547 Hs.204732 NM_021801 ENSG00000167346 MMP26 - matrix metallopeptidase 26 protein-coding 208-6 chr1 96121273 96121455 + 2 NA Intergenic L1MEd|LINE|L1 129296 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 429-211 chr4 96474817 96475177 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 164294 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 471-122 chr19 44486883 44487206 + 2 NA intron (NM_001288760, intron 3 of 6) AluSx|SINE|Alu 13478 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 446-185 chr3 59780106 59780425 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -121768 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 238-30 chr10 20750406 20750563 + 2 NA Intergenic L1MA8|LINE|L1 147118 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 290-159 chr16 66415444 66415671 + 2 NA Intergenic L2b|LINE|L2 7033 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 230-228 chr3 40378089 40378285 + 2 NA Intergenic L1MA6|LINE|L1 -8997 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 356-249 chr2 80412415 80412691 + 2 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 99174 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 300-54 chr10 100056238 100056396 + 2 NA intron (NM_001308, intron 6 of 8) L2a|LINE|L2 25552 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 600-16 chr10 122788431 122788900 + 2 NA intron (NR_003570, intron 21 of 27) intron (NR_003570, intron 21 of 27) 31971 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 308-420 chr6 67650641 67650857 + 2 NA Intergenic Intergenic -404602 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 232-121 chr16 54302044 54302198 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -15334 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 156-87 chr6 45221387 45221511 + 2 NA intron (NM_001350325, intron 2 of 10) L1MD2|LINE|L1 -23679 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 424-154 chr20 9028043 9028422 + 2 NA Intergenic L1M5|LINE|L1 -40822 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 355-18 chr1 118667173 118667398 + 2 NA Intergenic L1PA16|LINE|L1 321058 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 238-332 chr6 117153692 117153848 + 2 NA Intergenic L1ME4c|LINE|L1 -111788 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 242-287 chr5 6691387 6691560 + 2 NA intron (NR_103771, intron 2 of 2) L1MEc|LINE|L1 16238 NR_103771 100505625 Hs.550028 NR_103771 ENSG00000248677 LINC02102 - long intergenic non-protein coding RNA 2102 ncRNA 555-192 chr7 123045847 123046309 + 2 NA Intergenic L1M1|LINE|L1 -50378 NM_016945 50833 Hs.272395 NM_016945 ENSG00000128519 TAS2R16 BGLPT|T2R16 taste 2 receptor member 16 protein-coding 326-208 chr18 13550650 13550898 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -60340 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 328-416 chr4 109774627 109774817 + 2 NA intron (NM_001331035, intron 1 of 11) L2a|LINE|L2 27277 NM_001331035 3426 Hs.312485 NM_000204 ENSG00000205403 CFI AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF complement factor I protein-coding 338-230 chr18 55777201 55777398 + 2 NA non-coding (NR_145453, exon 2 of 2) non-coding (NR_145453, exon 2 of 2) 3122 NR_145453 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 229-19 chr1 199513637 199513799 + 2 NA Intergenic Intergenic 365120 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 191-108 chr2 138871119 138871251 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -26139 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 436-144 chr2 147185075 147185394 + 2 NA Intergenic L1PA7|LINE|L1 598177 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 271-290 chr4 4711345 4711534 + 2 NA TTS (NR_037888) TTS (NR_037888) 47113 NR_145783 109623454 NR_145783 SNORD162 - small nucleolar RNA, C/D box 162 snoRNA 321-27 chr1 180129778 180130019 + 2 NA Intergenic Intergenic -24935 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 351-484 chr8 76254394 76254668 + 2 NA Intergenic L1MA4A|LINE|L1 -152123 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 529-145 chr3 119329806 119330211 + 2 NA intron (NM_020754, intron 1 of 11) intron (NM_020754, intron 1 of 11) -7248 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 390-67 chr12 22941464 22941831 + 2 NA Intergenic L1M4c|LINE|L1 -233989 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 534-67 chr13 38809576 38810044 + 2 NA intron (NM_207361, intron 6 of 23) L1M1|LINE|L1 17781 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 208-83 chr16 35467901 35468058 + 2 NA Intergenic Intergenic 12617 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 295-465 chr8 78656045 78656279 + 2 NA Intergenic Intergenic -9927 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 417-74 chr14 33328517 33328844 + 2 NA intron (NM_173159, intron 3 of 11) AluSc8|SINE|Alu -380257 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 219-143 chr18 46599810 46599965 + 2 NA intron (NM_144612, intron 8 of 39) L1ME3E|LINE|L1 -40575 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 343-240 chr2 62557009 62557262 + 2 NA Intergenic Intergenic -50940 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 217-132 chr15 99685570 99685783 + 2 NA intron (NM_001352615, intron 9 of 12) L1PB1|LINE|L1 47761 NM_001284418 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 484-37 chr11 21953378 21953763 + 2 NA Intergenic L1MA2|LINE|L1 -239515 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 472-13 chr1 87568150 87568583 + 2 NA Intergenic Intergenic -196711 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 382-238 chr20 39508894 39509103 + 2 NA Intergenic L1MDa|LINE|L1 -284250 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 345-191 chr16 58076842 58077030 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 51182 NM_002428 4324 Hs.80343 NM_002428 ENSG00000102996 MMP15 MMP-15|MT2-MMP|MT2MMP|MTMMP2|SMCP-2 matrix metallopeptidase 15 protein-coding 400-273 chr5 18117336 18117656 + 2 NA Intergenic Intergenic 310222 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 305-552 chr8 132425891 132426167 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 21233 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 169-74 chr3 39569963 39570091 + 2 NA Intergenic Intergenic 67961 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 386-271 chr4 167413835 167414170 + 2 NA Intergenic L1ME3|LINE|L1 -179412 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 201-225 chr7 22175752 22175947 + 2 NA intron (NM_001367603, intron 1 of 5) intron (NM_001367603, intron 1 of 5) 17896 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 195-265 chrX 87219285 87219444 + 2 NA Intergenic Intergenic -298438 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 464-97 chr18 24618551 24618853 + 2 NA Intergenic Intergenic -9480 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LINC01915 - long intergenic non-protein coding RNA 1915 ncRNA 218-257 chr5 10183994 10184114 + 2 NA Intergenic Intergenic 65834 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 478-72 chr13 103100384 103100759 + 2 NA Intergenic Intergenic -34154 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 493-92 chr15 44945975 44946460 + 2 NA Intergenic Intergenic -10470 NM_152448 145645 Hs.567701 NM_152448 ENSG00000167014 TERB2 C15orf43 telomere repeat binding bouquet formation protein 2 protein-coding 256-418 chr8 79968559 79968752 + 2 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 61604 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 213-119 chr18 4060267 4060442 + 2 NA intron (NM_001242761, intron 2 of 11) MER50-int|LTR|ERV1 98001 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 305-181 chr16 60662296 60662460 + 2 NA Intergenic Intergenic -302585 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 368-315 chr3 190418580 190418788 + 2 NA Intergenic Intergenic 30812 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 350-278 chr20 52947508 52947794 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -24707 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 297-139 chr14 75561667 75561858 + 2 NA Intergenic L1PA15|LINE|L1 -16858 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 296-425 chr6 163628419 163628578 + 2 NA Intergenic Intergenic 42986 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 347-120 chr14 33352643 33352927 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) -356152 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 731-14 chr11 32638074 32638779 + 2 NA intron (NM_001008391, intron 13 of 17) intron (NM_001008391, intron 13 of 17) 54595 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 285-346 chr5 98275198 98275438 + 2 NA Intergenic L1MA3|LINE|L1 -114079 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 281-3 chr1 41155038 41155306 + 2 NA intron (NM_001031694, intron 3 of 15) intron (NM_001031694, intron 3 of 15) 6260 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 959-30 chr7 17391831 17392564 + 2 NA intron (NR_110015, intron 1 of 2) MSTB|LTR|ERVL-MaLR 17280 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 331-209 chr17 70209134 70209323 + 2 NA Intergenic Intergenic 39693 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 329-301 chr2 193502997 193503264 + 2 NA Intergenic MER61-int|LTR|ERV1 753285 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 409-102 chr15 101504335 101504600 + 2 NA Intergenic Intergenic -14483 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 313-92 chr11 102677189 102677405 + 2 NA Intergenic Intergenic 28472 NM_022122 64066 Hs.534479 NM_022122 ENSG00000137675 MMP27 MMP-27 matrix metallopeptidase 27 protein-coding 269-106 chr13 86566612 86566823 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -345203 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 340-132 chr13 76146395 76146581 + 2 NA Intergenic L3|LINE|CR1 -211356 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 353-276 chr20 13692063 13692364 + 2 NA Intergenic AluSx1|SINE|Alu -53277 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 355-436 chr6 105558290 105558531 + 2 NA Intergenic Intergenic -155328 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 343-298 chr20 15724994 15725325 + 2 NA intron (NM_001351663, intron 8 of 17) L1MC1|LINE|L1 198155 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 487-296 chr8 114819658 114820093 + 2 NA Intergenic L1M4|LINE|L1 848138 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 241-288 chr5 13773218 13773417 + 2 NA intron (NM_001369, intron 55 of 78) intron (NM_001369, intron 55 of 78) 171163 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 666-52 chr2 44318806 44319332 + 2 NA 3' UTR (NM_001171603, exon 15 of 15) 3' UTR (NM_001171603, exon 15 of 15) 40680 NM_001042386 9581 Hs.444349 NM_006036 ENSG00000138078 PREPL CMS22 prolyl endopeptidase like protein-coding 650-77 chr22 34072358 34072843 + 2 NA Intergenic Intergenic -149712 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 449-48 chr11 120916349 120916685 + 2 NA intron (NM_001282470, intron 12 of 19) L2c|LINE|L2 -21720 NR_132790 101929227 Hs.627156 NR_132790 ENSG00000250493 LOC101929227 - uncharacterized LOC101929227 ncRNA 325-580 chr9 111550638 111550822 + 2 NA 3' UTR (NM_133464, exon 6 of 6) 3' UTR (NM_133464, exon 6 of 6) 25551 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 330-428 chr5 78552527 78552801 + 2 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 96108 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 388-196 chr21 21987498 21987706 + 2 NA Intergenic Intergenic 110857 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 238-160 chr2 18119930 18120101 + 2 NA Intergenic Intergenic 241348 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 327-23 chr1 192839686 192839900 + 2 NA Intergenic MER4D|LTR|ERV1 30754 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 499-182 chr4 62721710 62722076 + 2 NA Intergenic Intergenic -560128 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 259-353 chr6 125694394 125694588 + 2 NA intron (NR_038906, intron 3 of 3) L1MB7|LINE|L1 20138 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 449-52 chr12 28606662 28607047 + 2 NA Intergenic AluSc|SINE|Alu -416116 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 281-396 chr6 104048080 104048348 + 2 NA Intergenic Intergenic 811332 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 236-226 chr3 78242183 78242384 + 2 NA Intergenic LTR49|LTR|ERV1 -193320 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 310-72 chr11 13562808 13562981 + 2 NA Intergenic Intergenic -66719 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 310-165 chr16 10101898 10102080 + 2 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 80078 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 329-23 chr1 177970448 177970635 + 2 NA promoter-TSS (NM_001356499) promoter-TSS (NM_001356499) -297 NM_001356499 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 359-346 chr4 331896 332172 + 2 NA Intergenic L1M4|LINE|L1 -5780 NM_001348279 7700 Hs.654355 NM_003441 ENSG00000131127 ZNF141 D4S90|pHZ-44 zinc finger protein 141 protein-coding 312-248 chr2 103539411 103539569 + 2 NA Intergenic Intergenic -555061 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 645-53 chr2 57649167 57649598 + 2 NA Intergenic L1MB8|LINE|L1 -258269 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 355-446 chr6 145521704 145521946 + 2 NA Intergenic L2a|LINE|L2 165052 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 271-261 chr3 30860398 30860659 + 2 NA intron (NM_207359, intron 2 of 14) intron (NM_207359, intron 2 of 14) 34133 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 614-15 chr10 112175270 112175819 + 2 NA intron (NM_001244949, intron 6 of 21) intron (NM_001244949, intron 6 of 21) 8221 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 300-477 chr8 116305935 116306087 + 2 NA intron (NR_046215, intron 1 of 13) THE1D|LTR|ERVL-MaLR 19048 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 421-25 chr10 24156008 24156290 + 2 NA intron (NM_001098500, intron 2 of 18) L1ME2|LINE|L1 -52642 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 315-172 chr16 52187983 52188227 + 2 NA Intergenic MIRc|SINE|MIR -70459 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 358-476 chr8 83995594 83995907 + 2 NA Intergenic Intergenic -187037 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 310-231 chr2 49976900 49977158 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -2826 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 191-11 chr1 107687187 107687284 + 2 NA intron (NM_006113, intron 18 of 26) intron (NM_006113, intron 18 of 26) 1264 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 344-239 chr2 75419132 75419359 + 2 NA Intergenic L2b|LINE|L2 -104823 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 556-18 chr10 29231650 29232191 + 2 NA Intergenic Intergenic -57150 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 335-492 chr7 16107085 16107326 + 2 NA intron (NM_001101426, intron 9 of 9) L1MA7|LINE|L1 -103281 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 584-27 chr11 43712225 43712649 + 2 NA intron (NM_016142, intron 1 of 10) AluSc5|SINE|Alu 31699 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 399-284 chr7 68365039 68365393 + 2 NA Intergenic Intergenic 344963 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 254-34 chr10 17931512 17931662 + 2 NA Intergenic MLT2B1|LTR|ERVL -20252 NM_001282734 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 487-40 chr10 66706882 66707234 + 2 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -218978 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 270-418 chr8 141947909 141948094 + 2 NA Intergenic Intergenic -161688 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 258-432 chr9 124145261 124145419 + 2 NA Intergenic MER77B|LTR|ERVL -112266 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 268-151 chr17 62321065 62321316 + 2 NA Intergenic AluJb|SINE|Alu -45535 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 525-117 chr2 68984594 68985017 + 2 NA Intergenic L1M5|LINE|L1 10232 NM_019617 56287 Hs.69319 NM_019617 ENSG00000169605 GKN1 AMP18|BRICD1|CA11|FOV|foveolin gastrokine 1 protein-coding 521-14 chr1 191572556 191572908 + 2 NA Intergenic Intergenic -344234 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 264-7 chr1 90668403 90668652 + 2 NA Intergenic Intergenic 10777 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 348-10 chr1 77329601 77329922 + 2 NA intron (NM_012093, intron 5 of 13) intron (NM_012093, intron 5 of 13) 46674 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 255-15 chr1 185570454 185570701 + 2 NA intron (NR_110793, intron 2 of 3) intron (NR_110793, intron 2 of 3) 57911 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 123-47 chr5 64764894 64764981 + 2 NA intron (NM_173829, intron 1 of 4) intron (NM_173829, intron 1 of 4) 3754 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 139-65 chr4 97654809 97654907 + 2 NA intron (NM_174952, intron 10 of 10) L1ME4a|LINE|L1 287932 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 288-36 chr1 237409963 237410128 + 2 NA intron (NM_001035, intron 10 of 104) intron (NM_001035, intron 10 of 104) -61074 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 296-60 chr10 94681333 94681485 + 2 NA Intergenic L1MA9|LINE|L1 -2320 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 255-218 chr2 191530517 191530738 + 2 NA Intergenic Intergenic -147445 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 528-129 chr2 100495503 100495895 + 2 NA Intergenic Intergenic 25217 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 290-464 chr8 125744235 125744392 + 2 NA Intergenic Intergenic 206884 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 199-115 chr2 77117723 77117865 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 131829 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 442-105 chr17 69666041 69666282 + 2 NA intron (NR_109972, intron 3 of 4) L1MEf|LINE|L1 72174 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 476-30 chr10 82771889 82772252 + 2 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -539150 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 306-544 chr9 28650330 28650541 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 68870 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 240-419 chr8 117327864 117328021 + 2 NA Intergenic Intergenic -192771 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 323-335 chr3 96177162 96177382 + 2 NA Intergenic Intergenic -182692 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 400-72 chr12 90603895 90604165 + 2 NA Intergenic Intergenic 310712 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 382-25 chr1 228765064 228765419 + 2 NA Intergenic AluJo|SINE|Alu 29762 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 459-328 chr9 71260767 71261150 + 2 NA intron (NM_001366143, intron 1 of 25) L1P3|LINE|L1 -139337 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 394-259 chr5 31103775 31104066 + 2 NA Intergenic L1ME3Cz|LINE|L1 -89766 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 274-86 chr11 110863793 110863974 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -150694 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 373-256 chr3 6437060 6437354 + 2 NA Intergenic Intergenic 368242 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 466-235 chr6 149242530 149242944 + 2 NA TTS (NR_149096) TTS (NR_149096) 14814 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 352-284 chr20 42524261 42524506 + 2 NA intron (NM_133170, intron 7 of 31) L1MEd|LINE|L1 -161100 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 333-140 chr14 30108673 30108981 + 2 NA Intergenic Intergenic -180980 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 616-162 chr7 102841964 102842510 + 2 NA intron (NM_001287150, intron 16 of 18) intron (NM_001287150, intron 16 of 18) -70763 NM_001031692 10234 Hs.567412 NM_005824 ENSG00000128606 LRRC17 P37NB leucine rich repeat containing 17 protein-coding 164-60 chr2 225211216 225211372 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -168826 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 221-96 chr15 97410716 97410907 + 2 NA intron (NR_120324, intron 3 of 4) intron (NR_120324, intron 3 of 4) 111000 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 431-172 chr3 26121717 26121943 + 2 NA Intergenic L1PA16|LINE|L1 -248135 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 113-37 chr4 31240291 31240389 + 2 NA Intergenic Intergenic 69196 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 621-95 chr5 54372553 54373021 + 2 NA intron (NR_126379, intron 1 of 4) L1MB3|LINE|L1 51843 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 252-359 chr6 37834120 37834278 + 2 NA intron (NM_021943, intron 1 of 5) L1MC1|LINE|L1 14472 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 388-85 chr12 82141227 82141558 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 187673 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 476-25 chr10 56092785 56093113 + 2 NA Intergenic L1PA10|LINE|L1 268310 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 255-81 chr12 92864674 92864876 + 2 NA intron (NM_003566, intron 3 of 28) intron (NM_003566, intron 3 of 28) 64520 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 666-86 chr4 80799984 80800418 + 2 NA intron (NM_001206997, intron 4 of 6) (ATATATT)n|Simple_repeat|Simple_repeat -230507 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 313-230 chr2 12274198 12274422 + 2 NA intron (NR_110196, intron 3 of 5) L1MEg|LINE|L1 75180 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 333-163 chr15 46419137 46419443 + 2 NA Intergenic MIR|SINE|MIR 714095 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 396-340 chr7 121539433 121539763 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -143230 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 287-257 chr3 102881037 102881257 + 2 NA Intergenic Intergenic 446132 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 585-84 chr2 204396047 204396423 + 2 NA Intergenic L1MC1|LINE|L1 -149240 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 545-190 chr5 121320253 121320637 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -2105 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 297-467 chr8 79066126 79066359 + 2 NA Intergenic L1MC2|LINE|L1 228713 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 417-49 chr11 95571183 95571443 + 2 NA Intergenic Intergenic 218469 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 342-357 chr4 58066004 58066308 + 2 NA Intergenic L1PA15|LINE|L1 470172 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 264-217 chr2 149462025 149462277 + 2 NA intron (NM_194317, intron 3 of 4) L1MD1|LINE|L1 -125207 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 597-38 chr12 10017835 10018340 + 2 NA TTS (NM_205852) TTS (NM_205852) 7460 NM_001129998 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 209-199 chr3 72750804 72750977 + 2 NA intron (NM_018130, intron 10 of 10) L1M5|LINE|L1 -86641 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 213-32 chr10 32200317 32200454 + 2 NA Intergenic Intergenic -143960 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 512-4 chr1 34380983 34381364 + 2 NA Intergenic Intergenic 204266 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 281-228 chr2 124783355 124783512 + 2 NA intron (NM_130773, intron 17 of 23) intron (NM_130773, intron 17 of 23) 758146 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 340-143 chr14 42510855 42511111 + 2 NA Intergenic L1M4c|LINE|L1 904127 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 278-464 chrX 81892614 81892834 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 690622 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 295-29 chr1 217447104 217447291 + 2 NA intron (NM_018040, intron 9 of 9) intron (NM_018040, intron 9 of 9) 183893 NM_001297754 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 262-194 chr2 20064093 20064253 + 2 NA Intergenic Intergenic -12545 NM_014713 9741 Hs.467807 NM_014713 ENSG00000068697 LAPTM4A HUMORF13|LAPTM4|MBNT|Mtrp lysosomal protein transmembrane 4 alpha protein-coding 392-317 chr8 54357605 54357806 + 2 NA Intergenic Intergenic 27019 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 283-439 chr8 83088775 83089005 + 2 NA Intergenic (CATA)n|Simple_repeat|Simple_repeat 176786 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 310-302 chr21 20901104 20901371 + 2 NA Intergenic Intergenic -97172 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 310-475 chr7 33434984 33435274 + 2 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 305565 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 393-377 chr8 141826930 141827181 + 2 NA Intergenic HAL1|LINE|L1 -40742 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 359-204 chr19 13317297 13317535 + 2 NA intron (NM_023035, intron 10 of 46) intron (NM_023035, intron 10 of 46) 167005 NM_004907 9592 Hs.501629 NM_004907 ENSG00000160888 IER2 ETR101 immediate early response 2 protein-coding 292-256 chr20 51253151 51253361 + 2 NA Intergenic Intergenic 199721 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 276-322 chr4 22840231 22840412 + 2 NA Intergenic Intergenic 126232 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 255-215 chr2 183926903 183927107 + 2 NA Intergenic MER77|LTR|ERVL -451970 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 361-281 chr3 54528824 54529041 + 2 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 110925 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 323-120 chr12 110990515 110990771 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -32825 NR_135001 105369980 Hs.564357 NR_135001 ENSG00000258240 LOC105369980 - uncharacterized LOC105369980 ncRNA 279-228 chr20 60400126 60400385 + 2 NA Intergenic L1ME2z|LINE|L1 72721 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 263-305 chr4 139759261 139759477 + 2 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 93550 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 222-2 chr1 33854724 33854896 + 2 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) -5665 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 538-210 chr6 85199899 85200389 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 190042 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 252-421 chr8 88431586 88431816 + 2 NA Intergenic L1M2|LINE|L1 -104218 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 374-70 chr12 65107773 65108137 + 2 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 13350 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 389-270 chr4 107431017 107431365 + 2 NA Intergenic Looper|DNA|PiggyBac 289043 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 306-357 chr4 73030947 73031135 + 2 NA Intergenic Intergenic 38675 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 667-127 chr9 74885066 74885601 + 2 NA intron (NM_017662, intron 1 of 38) HAL1|LINE|L1 2014 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 349-150 chr14 30482808 30483110 + 2 NA intron (NR_151720, intron 3 of 3) L1M5|LINE|L1 -76164 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 139-86 chr7 92299508 92299644 + 2 NA intron (NM_019004, intron 2 of 19) Charlie1a|DNA|hAT-Charlie -53476 NM_001350672 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 589-174 chrX 116855513 116856037 + 2 NA Intergenic L1PA15|LINE|L1 -37915 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 233-210 chr21 22479395 22479552 + 2 NA Intergenic L1M1|LINE|L1 380856 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 397-174 chr2 169690904 169691261 + 2 NA intron (NM_001085447, intron 1 of 8) L1MB7|LINE|L1 3323 NM_001085447 129881 Hs.370111 NM_001085447 ENSG00000154479 CCDC173 C2orf77 coiled-coil domain containing 173 protein-coding 354-90 chr11 110888977 110889324 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -175961 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 248-191 chr2 84481360 84481551 + 2 NA Intergenic Intergenic -22175 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 411-98 chr15 27661961 27662278 + 2 NA Intergenic L1MA8|LINE|L1 437196 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 419-45 chr10 127060458 127060740 + 2 NA intron (NM_001290223, intron 22 of 51) intron (NM_001290223, intron 22 of 51) 135992 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 259-42 chr10 43731004 43731183 + 2 NA Intergenic L1M4|LINE|L1 47732 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 276-172 chr15 89564081 89564328 + 2 NA Intergenic AluSq|SINE|Alu -11265 NM_152259 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 680-57 chr2 88304280 88304795 + 2 NA Intergenic L1ME5|LINE|L1 131398 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 243 chr1 4476214 4476382 + 2 NA Intergenic Intergenic 64247 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 578-146 chr5 155196119 155196472 + 2 NA Intergenic Intergenic 182540 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 157-140 chr9 80356524 80356677 + 2 NA Intergenic Intergenic 381577 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 458-248 chr8 46182404 46182768 + 2 NA Intergenic GSAT|Satellite|centr 435057 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 371-409 chr9 24336631 24336990 + 2 NA Intergenic (TAATATT)n|Simple_repeat|Simple_repeat 208866 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 712-55 chr21 30088822 30089529 + 2 NA Intergenic Intergenic 77630 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 526-87 chr16 5331343 5331716 + 2 NA Intergenic Intergenic -233709 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 297-497 chr8 135976608 135976807 + 2 NA Intergenic L2c|LINE|L2 519251 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 269-140 chr15 94783130 94783321 + 2 NA Intergenic L1ME3A|LINE|L1 -72138 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 380-329 chr6 19662665 19663025 + 2 NA Intergenic Intergenic 141914 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 492-284 chr9 84150782 84151107 + 2 NA Intergenic Intergenic 87501 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 136-13 chr11 29229124 29229230 + 2 NA Intergenic Intergenic -365236 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 261-368 chr8 24063451 24063662 + 2 NA Intergenic L1MA9|LINE|L1 -208750 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 232-193 chr2 159843553 159843678 + 2 NA intron (NM_002349, intron 23 of 34) MIR|SINE|MIR -45360 NM_001198763 9936 Hs.130014 NM_014880 ENSG00000241399 CD302 BIMLEC|CLEC13A|DCL-1|DCL1 CD302 molecule protein-coding 251-77 chr13 37336244 37336398 + 2 NA Intergenic Intergenic 148463 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 383-142 chr16 35977863 35978167 + 2 NA Intergenic ALR/Alpha|Satellite|centr 231463 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 337-72 chr10 113769033 113769276 + 2 NA intron (NM_001193434, intron 6 of 12) intron (NM_001193434, intron 6 of 12) 4335 NM_182601 79949 Hs.228320 NM_024889 ENSG00000148735 PLEKHS1 C10orf81|HEL185 pleckstrin homology domain containing S1 protein-coding 224-66 chr12 90198154 90198348 + 2 NA Intergenic L2a|LINE|L2 -95067 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 233-388 chr8 131762948 131763121 + 2 NA Intergenic L2c|LINE|L2 -141059 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 225-80 chr12 131638973 131639145 + 2 NA Intergenic Intergenic 9062 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 302-68 chr11 20941254 20941480 + 2 NA intron (NM_201551, intron 10 of 18) MIR|SINE|MIR 271781 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 353-380 chr4 97120506 97120714 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -246316 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 275-234 chr22 27710088 27710286 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 91569 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 238-337 chr6 137143430 137143583 + 2 NA TTS (NM_052962) TTS (NM_052962) 30138 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 251-123 chr16 74062581 74062787 + 2 NA Intergenic L1ME3E|LINE|L1 152837 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 235-307 chr6 61256614 61256812 + 2 NA Intergenic L1PA15|LINE|L1 -317417 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 244-17 chr1 161945249 161945476 + 2 NA intron (NM_007348, intron 15 of 15) intron (NM_007348, intron 15 of 15) 79103 NM_015441 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 360-463 chr8 87076252 87076581 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 210001 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 378-107 chr12 79768293 79768554 + 2 NA Intergenic Intergenic -77326 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 369-203 chr2 104016304 104016494 + 2 NA Intergenic L1ME3A|LINE|L1 391933 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 203-224 chr7 109414091 109414218 + 2 NA Intergenic L1MEc|LINE|L1 -529567 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 231-89 chr14 29788454 29788583 + 2 NA intron (NM_001330069, intron 1 of 18) L1MA4|LINE|L1 138578 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 471-32 chr10 77313338 77313660 + 2 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 37262 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 201-104 chr19 22076277 22076439 + 2 NA intron (NM_033468, intron 3 of 3) intron (NM_033468, intron 3 of 3) 23874 NM_001316997 113835 Hs.283900 NM_033468 ENSG00000197134 ZNF257 BMZF-4|BMZF4 zinc finger protein 257 protein-coding 269-79 chr11 120786503 120786697 + 2 NA intron (NM_001282470, intron 2 of 19) intron (NM_001282470, intron 2 of 19) 32515 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 229-100 chr13 42801906 42802105 + 2 NA Intergenic Intergenic 10557 NR_125747 103689845 Hs.422131 NR_125747 ENSG00000271216 LINC01050 - long intergenic non-protein coding RNA 1050 ncRNA 330-28 chr1 160706543 160706827 + 2 NA intron (NM_001778, intron 1 of 3) MER41B|LTR|ERV1 5137 NM_001778 962 Hs.243564 NM_001778 ENSG00000117091 CD48 BCM1|BLAST|BLAST1|MEM-102|SLAMF2|hCD48|mCD48 CD48 molecule protein-coding 231-274 chr5 16227310 16227502 + 2 NA Intergenic L2a|LINE|L2 47165 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 346-409 chr5 164864936 164865128 + 2 NA Intergenic Intergenic 394753 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 1058-4 chr11 107137322 107137986 + 2 NA Intergenic L1MC3|LINE|L1 -119178 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 737-92 chrX 83067679 83068229 + 2 NA Intergenic MIR|SINE|MIR -440336 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 456-58 chr12 40420353 40420716 + 2 NA intron (NM_173600, intron 14 of 173) intron (NM_173600, intron 14 of 173) 27140 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 204-76 chr13 87474627 87474768 + 2 NA intron (NR_033829, intron 2 of 5) intron (NR_033829, intron 2 of 5) 144043 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 321-365 chr3 25254858 25255073 + 2 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -85837 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 465-28 chr10 55456875 55457245 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -141982 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 647-45 chr2 36026975 36027414 + 2 NA Intergenic Intergenic 328376 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 456-216 chr4 16144454 16144806 + 2 NA Intergenic L1MA4|LINE|L1 -60607 NM_006017 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 300-43 chr10 56301200 56301494 + 2 NA Intergenic Intergenic 59912 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 373-266 chr3 144091947 144092202 + 2 NA Intergenic Intergenic 118993 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 372-35 chr1 238746551 238746831 + 2 NA Intergenic MER52-int|LTR|ERV1 -260674 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 269-316 chr5 50985897 50986133 + 2 NA Intergenic Intergenic -15828 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 252-301 chr4 97195936 97196124 + 2 NA Intergenic Intergenic -170896 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 537-118 chr2 105531036 105531466 + 2 NA Intergenic L1ME3A|LINE|L1 79308 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 370-83 chr11 48055088 48055378 + 2 NA intron (NM_001098503, intron 1 of 8) MIRb|SINE|MIR -41549 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 396-207 chr3 638651 638989 + 2 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 46715 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 392-190 chr22 34530376 34530732 + 2 NA Intergenic Intergenic 467362 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 424-203 chr4 114928870 114929083 + 2 NA intron (NM_022569, intron 6 of 13) MLT2B4|LTR|ERVL 184644 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 334-237 chr19 34788720 34788972 + 2 NA Intergenic L1MA8|LINE|L1 -15631 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 122-48 chr6 119922155 119922232 + 2 NA Intergenic L1M1|LINE|L1 -92986 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 332-270 chr2 166396137 166396318 + 2 NA Intergenic Intergenic -20240 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 459-140 chr2 82521302 82521636 + 2 NA Intergenic Intergenic -335334 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 256-101 chr13 46204190 46204318 + 2 NA Intergenic Intergenic -7674 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 224-80 chr14 45896845 45897007 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -167233 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 386-161 chr2 22591401 22591640 + 2 NA Intergenic L1PA10|LINE|L1 55041 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 549-101 chr2 16271015 16271481 + 2 NA Intergenic L2c|LINE|L2 220821 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 193-22 chr1 243911853 243911987 + 2 NA Intergenic Intergenic -5482 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 309-427 chr5 19283374 19283593 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 602789 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 304-37 chr10 10648622 10648854 + 2 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 146176 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 378-237 chr2 113101590 113101905 + 2 NA Intergenic Intergenic -16146 NM_173841 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 323-316 chr3 6523925 6524195 + 2 NA Intergenic Intergenic 281389 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 284-177 chr19 19764685 19764897 + 2 NA intron (NR_026956, intron 1 of 2) ERVL-B4-int|LTR|ERVL 11622 NR_026956 284440 Hs.665307 NR_026956 LINC00663 - long intergenic non-protein coding RNA 663 ncRNA 328-64 chr10 109061668 109061929 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 861448 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 522-210 chr5 87036622 87036966 + 2 NA Intergenic L1MEg|LINE|L1 78160 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 279-39 chr10 57684722 57684907 + 2 NA Intergenic Intergenic -380255 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 245-10 chr1 111934488 111934666 + 2 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 24920 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 269-33 chr1 239360650 239360857 + 2 NA Intergenic Intergenic -25815 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 257-342 chr5 179690226 179690414 + 2 NA Intergenic AluSq10|SINE|Alu -8107 NM_001363994 821 Hs.567968 NM_001746 ENSG00000127022 CANX CNX|IP90|P90 calnexin protein-coding 354-146 chr14 78078974 78079197 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -91288 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 310-351 chr3 167642887 167643061 + 2 NA intron (NM_001348951, intron 2 of 18) L1MC4|LINE|L1 10968 NM_001366157 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 282-151 chr15 97699447 97699671 + 2 NA Intergenic Intergenic -138861 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 346-65 chr11 24922557 24922754 + 2 NA intron (NM_001009909, intron 7 of 11) intron (NM_001009909, intron 7 of 11) 425602 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 324-389 chr4 61034187 61034456 + 2 NA Intergenic Intergenic -109335 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 297-264 chr20 40789807 40790021 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -75291 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 396-62 chr10 112905640 112905993 + 2 NA Intergenic Intergenic -44431 NM_001198528 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 212-344 chr9 32341149 32341337 + 2 NA Intergenic Intergenic -43360 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 296-107 chr12 57704037 57704233 + 2 NA intron (NM_001017956, intron 5 of 13) L1MB4|LINE|L1 10003 NM_006812 10956 Hs.527861 NM_006812 ENSG00000135506 OS9 ERLEC2|OS-9 OS9 endoplasmic reticulum lectin protein-coding 180-79 chr2 40088530 40088678 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 170970 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 441-63 chr12 129705404 129705705 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 198471 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 442-152 chr2 236799911 236800207 + 2 NA Intergenic Intergenic 230234 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 239-305 chr5 27721115 27721351 + 2 NA Intergenic (ATAAGT)n|Simple_repeat|Simple_repeat 248941 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 289-364 chr5 26569211 26569484 + 2 NA Intergenic MER52A|LTR|ERV1 469239 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 581-63 chr18 560579 561094 + 2 NA Intergenic L1ME3D|LINE|L1 -19544 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 585-119 chr5 12083720 12084238 + 2 NA Intergenic L1MA4A|LINE|L1 -179533 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 193-168 chr5 54804968 54805099 + 2 NA Intergenic Intergenic -60775 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 196-255 chr8 118825871 118826042 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 125929 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 479-140 chr3 81224070 81224486 + 2 NA Intergenic Intergenic 230410 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 314-360 chr3 9542124 9542320 + 2 NA intron (NM_198560, intron 2 of 3) AluSx|SINE|Alu 11600 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 267-27 chr1 183878643 183878825 + 2 NA intron (NM_001297669, intron 5 of 18) intron (NM_001297669, intron 5 of 18) 73614 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 138-16 chr13 22637459 22637550 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 260677 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 401-354 chrX 137163011 137163289 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -131476 NM_054021 83550 Hs.350569 NM_054021 ENSG00000165370 GPR101 GPCR6|PAGH2|PITA2 G protein-coupled receptor 101 protein-coding 289-205 chr2 3279639 3279845 + 2 NA intron (NM_001330530, intron 3 of 9) intron (NM_001330530, intron 3 of 9) 98076 NM_001330530 7260 Hs.502770 NM_003310 ENSG00000032389 EIPR1 EIPR-1|TSSC1 EARP complex and GARP complex interacting protein 1 protein-coding 662-9 chr10 59979866 59980439 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -19239 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 340-124 chr12 133209935 133210165 + 2 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 25786 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 262-366 chr6 50123632 50123787 + 2 NA Intergenic Intergenic -73780 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 329-609 chr9 87084479 87084770 + 2 NA non-coding (NR_036691, exon 1 of 1) non-coding (NR_036691, exon 1 of 1) 601 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 340-141 chr14 40732220 40732545 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -222329 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 338-588 chr9 73269304 73269610 + 2 NA Intergenic Intergenic 117592 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 362-103 chr11 127917870 127918156 + 2 NA Intergenic L1PA8A|LINE|L1 -290753 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 398-347 chr8 59160775 59161059 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 41707 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 205-252 chr6 155860162 155860342 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -86545 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 348-487 chr7 24469568 24469765 + 2 NA Intergenic L1MD1|LINE|L1 -103786 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 255-321 chr5 32809002 32809169 + 2 NA Intergenic Intergenic 97764 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 389-293 chr5 89320339 89320701 + 2 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -416415 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 265-379 chr7 159267256 159267464 + 2 NA Intergenic AluSq2|SINE|Alu -122403 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 311-392 chr4 164638867 164639113 + 2 NA Intergenic Intergenic -115141 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 391-277 chr5 8568066 8568358 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 107287 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 308-417 chr6 40150531 40150809 + 2 NA Intergenic Intergenic 205336 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 210-153 chr20 24169219 24169351 + 2 NA Intergenic L1MD1|LINE|L1 -30482 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 397-12 chr1 173006751 173007144 + 2 NA Intergenic L1M1|LINE|L1 44016 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 284-43 chr10 65158858 65159096 + 2 NA Intergenic Intergenic -234459 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 262-179 chr18 10892954 10893143 + 2 NA intron (NM_022068, intron 4 of 51) Penelope1_Vert|LINE|Penelope -133399 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 708-4 chr1 104952457 104952908 + 2 NA Intergenic Intergenic 666253 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 225-197 chr3 25365900 25366072 + 2 NA intron (NM_001290300, intron 1 of 7) MLT1G|LTR|ERVL-MaLR 18941 NR_134933 105376997 Hs.536687 NR_134933 RARB-AS1 - RARB antisense RNA 1 ncRNA 267-347 chr5 133241247 133241486 + 2 NA intron (NM_015082, intron 7 of 15) intron (NM_015082, intron 7 of 15) 186340 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 506-56 chr11 78405638 78406010 + 2 NA intron (NM_080491, intron 1 of 9) L1MD1|LINE|L1 11996 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 258-147 chr15 87126612 87126836 + 2 NA Intergenic AluJb|SINE|Alu -138298 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 412-227 chr4 30430527 30430923 + 2 NA Intergenic Intergenic -289644 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 485-195 chr3 198029208 198029665 + 2 NA intron (NR_026786, intron 15 of 16) AluSz|SINE|Alu 10031 NR_046669 100873947 Hs.637166 NR_046669 ENSG00000232832 LMLN-AS1 - LMLN antisense RNA 1 ncRNA 288-64 chr11 23907084 23907260 + 2 NA Intergenic L1PA15|LINE|L1 -487982 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 270-105 chr14 44318480 44318621 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 188733 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 282-227 chr2 128981128 128981319 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 116623 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 346-196 chr17 65284501 65284748 + 2 NA Intergenic AluSg|SINE|Alu 147254 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 326-194 chr17 15021379 15021595 + 2 NA intron (NR_135638, intron 1 of 1) intron (NR_135638, intron 1 of 1) 6682 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 858-6 chr10 80812900 80813456 + 2 NA Intergenic (ATACAC)n|Simple_repeat|Simple_repeat 163381 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 362-190 chr17 54636884 54637110 + 2 NA Intergenic L1M1|LINE|L1 -263694 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 314-561 chr8 59204423 59204733 + 2 NA Intergenic L1MEg1|LINE|L1 85368 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 449-68 chr13 71877749 71878118 + 2 NA Intergenic Intergenic -10729 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 262-290 chr3 125208367 125208603 + 2 NA intron (NM_001195483, intron 1 of 12) MIR|SINE|MIR 2914 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 503-82 chr12 118772728 118773076 + 2 NA Intergenic LTR1B1|LTR|ERV1 -11223 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 584-184 chrX 27726512 27727087 + 2 NA intron (NM_001353450, intron 4 of 4) L1ME3A|LINE|L1 -81191 NM_182506 139422 Hs.447363 NM_182506 ENSG00000177689 MAGEB10 - MAGE family member B10 protein-coding 430-173 chr20 53760778 53761191 + 2 NA Intergenic MIRb|SINE|MIR 114725 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 332-339 chr3 113051451 113051707 + 2 NA Intergenic Intergenic -31908 NM_001319112 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 275-13 chr1 107711643 107711812 + 2 NA intron (NM_006113, intron 15 of 26) AluSx|SINE|Alu -23228 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 342-540 chr8 133933185 133933479 + 2 NA Intergenic MER31A|LTR|ERV1 46836 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 247-34 chr10 20310767 20310957 + 2 NA Intergenic Intergenic -241108 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 187-106 chr3 62787390 62787564 + 2 NA intron (NM_003716, intron 1 of 29) Charlie7|DNA|hAT-Charlie 87939 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 374-208 chr2 181156516 181156744 + 2 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 32793 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 556-194 chr6 91884065 91884468 + 2 NA Intergenic L1PA13|LINE|L1 -193838 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 302-313 chr4 31275446 31275674 + 2 NA Intergenic Intergenic 104416 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 184-38 chr11 69342457 69342617 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 48382 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 120-16 chr14 51233856 51233917 + 2 NA Intergenic L1M4b|LINE|L1 -6361 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 224-236 chr4 172969550 172969699 + 2 NA intron (NM_001034845, intron 10 of 12) L1M8|LINE|L1 -199187 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 220-303 chr5 149610442 149610614 + 2 NA intron (NM_001001669, intron 4 of 12) intron (NM_001001669, intron 4 of 12) 29030 NM_001001669 389337 Hs.256206 NM_001001669 ENSG00000183111 ARHGEF37 - Rho guanine nucleotide exchange factor 37 protein-coding 354-61 chr10 108379878 108380069 + 2 NA Intergenic Intergenic -310680 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 242-325 chr5 140982971 140983143 + 2 NA intron (NM_018911, intron 3 of 3) intron (NM_018911, intron 3 of 3) 16290 NM_031883 56134 Hs.199343 NM_018899 ENSG00000243232 PCDHAC2 PCDH-ALPHA-C2 protocadherin alpha subfamily C, 2 protein-coding 383-203 chr2 169432041 169432239 + 2 NA Intergenic L1PA7|LINE|L1 -47354 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 273-293 chr3 74562499 74562694 + 2 NA Intergenic Intergenic -41456 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 377-53 chr10 112847257 112847587 + 2 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 23926 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 360-490 chr9 100926271 100926610 + 2 NA Intergenic MLT2B1|LTR|ERVL -102287 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 112-25 chr2 55405507 55405595 + 2 NA intron (NM_001254943, intron 2 of 33) MER1B|DNA|hAT-Charlie 14305 NM_001254943 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 309-327 chr22 26125631 26125920 + 2 NA Intergenic Intergenic -43687 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 268-138 chr15 96878682 96878826 + 2 NA Intergenic Intergenic 95319 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 335-68 chr10 90260756 90261086 + 2 NA Intergenic Intergenic 279884 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 503-299 chr9 8096176 8096666 + 2 NA Intergenic Intergenic -296643 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 310-442 chr6 39386955 39387145 + 2 NA intron (NM_001289024, intron 2 of 9) L3|LINE|CR1 44340 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 191-68 chr16 59973936 59974116 + 2 NA intron (NR_110917, intron 1 of 3) MER44B|DNA|TcMar-Tigger 118673 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 644-33 chr18 55646969 55647322 + 2 NA Intergenic Intergenic -11188 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 271-310 chr4 67203106 67203327 + 2 NA Intergenic Intergenic 218784 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 315-500 chr8 137609710 137609956 + 2 NA Intergenic Intergenic -196245 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 372-189 chr17 65464240 65464470 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 6814 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 217-51 chr10 92166385 92166550 + 2 NA intron (NM_001178137, intron 4 of 9) Tigger1|DNA|TcMar-Tigger 76812 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 170-98 chr3 119895817 119895935 + 2 NA intron (NM_002093, intron 7 of 11) AluJb|SINE|Alu 113166 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 271-247 chr22 25953533 25953726 + 2 NA intron (NM_001318245, intron 38 of 43) intron (NM_001318245, intron 38 of 43) 211441 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 375-386 chr7 95140667 95140878 + 2 NA intron (NM_017650, intron 4 of 15) AluJb|SINE|Alu 183760 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 407-260 chr5 136147989 136148326 + 2 NA intron (NM_005903, intron 2 of 7) Tigger18a|DNA|TcMar-Tigger -13267 NR_026763 9597 Hs.59666 NM_022001 ENSG00000164621 SMAD5-AS1 DAMS|SMAD5AS|SMAD5OS SMAD5 antisense RNA 1 ncRNA 571-193 chrX 22458545 22458930 + 2 NA intron (NR_073010, intron 4 of 11) L1MB7|LINE|L1 185824 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 415-301 chr9 27604155 27604504 + 2 NA Intergenic Intergenic -30463 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 357-200 chr2 63394989 63395283 + 2 NA intron (NR_148704, intron 11 of 18) L1ME2|LINE|L1 42871 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 181-142 chr6 127004367 127004522 + 2 NA Intergenic Intergenic -114227 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 219-347 chr8 24517115 24517288 + 2 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -2333 NR_125809 101929315 Hs.125562 NR_125809 ENSG00000253643 LOC101929315 - uncharacterized LOC101929315 ncRNA 525-188 chr5 4133988 4134409 + 2 NA Intergenic Intergenic 538366 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 273-32 chr1 221547448 221547648 + 2 NA Intergenic L1MC3|LINE|L1 189352 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 229-268 chr3 185002119 185002338 + 2 NA intron (NM_001009921, intron 44 of 46) L1MD|LINE|L1 150832 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 362-127 chr12 125567928 125568153 + 2 NA intron (NM_052907, intron 4 of 8) intron (NM_052907, intron 4 of 8) -54412 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 212-78 chr12 14290384 14290494 + 2 NA Intergenic LTR37B|LTR|ERV1 -75193 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 252-392 chr7 24416269 24416474 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 132181 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 330-543 chr8 140180809 140181096 + 2 NA intron (NM_001160372, intron 17 of 22) L1ME1|LINE|L1 -80417 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 254-447 chrX 50610282 50610490 + 2 NA intron (NR_027121, intron 5 of 9) intron (NR_027121, intron 5 of 9) -139561 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 285-348 chr5 105862930 105863163 + 2 NA Intergenic L1PA14|LINE|L1 763572 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 239-415 chr8 121071432 121071576 + 2 NA Intergenic LTR56|LTR|ERV1 -259458 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 297-416 chr6 127061810 127061999 + 2 NA Intergenic L1MEf|LINE|L1 -56767 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 200-216 chr5 58547517 58547661 + 2 NA intron (NR_109904, intron 1 of 3) intron (NR_109904, intron 1 of 3) 10654 NR_109904 101928600 Hs.694699 NR_109904 ENSG00000250127 LINC02108 - long intergenic non-protein coding RNA 2108 ncRNA 567-111 chr3 28903741 28904180 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 328682 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 285-334 chr5 33670245 33670498 + 2 NA intron (NM_001324512, intron 5 of 21) L1MD2|LINE|L1 221619 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 301-324 chr4 87929405 87929651 + 2 NA Intergenic Intergenic -46122 NM_000582 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 297-335 chr4 71862999 71863161 + 2 NA Intergenic HERVK9-int|LTR|ERVK -57560 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 398-284 chr5 159753439 159753713 + 2 NA Intergenic L1PB1|LINE|L1 117808 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 491-257 chr8 84521523 84521825 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 106190 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 383-216 chr20 2630216 2630450 + 2 NA intron (NM_080751, intron 17 of 19) L1M4|LINE|L1 -22299 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 746 chr1 5036999 5037440 + 2 NA Intergenic Intergenic 382610 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 387-390 chr9 36093853 36094137 + 2 NA intron (NM_021111, intron 10 of 20) L1MA8|LINE|L1 -42541 NR_104640 152007 Hs.493819 NM_022343 ENSG00000122694 GLIPR2 C9orf19|GAPR-1|GAPR1 GLI pathogenesis related 2 protein-coding 352-324 chr3 83676398 83676629 + 2 NA Intergenic Intergenic 1193062 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 396-307 chr6 48326259 48326561 + 2 NA Intergenic Intergenic -257721 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 321-77 chr10 108620867 108621038 + 2 NA Intergenic Intergenic -551659 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 167-83 chr4 57955797 57955920 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 529986 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 546-65 chr14 25850200 25850633 + 2 NA Intergenic Intergenic 703014 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 173-118 chr6 65968894 65969022 + 2 NA Intergenic Intergenic 181079 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 218-185 chr20 6661257 6661469 + 2 NA Intergenic Intergenic 74773 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 529-67 chr14 59547414 59547784 + 2 NA intron (NM_001164399, intron 8 of 19) L1MEd|LINE|L1 29213 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 417-43 chr10 118176453 118176740 + 2 NA intron (NR_026940, intron 3 of 3) L1ME1|LINE|L1 -129655 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 173-151 chrX 155208952 155209096 + 2 NA intron (NM_001303544, intron 2 of 6) intron (NM_001303544, intron 2 of 6) -7249 NM_001303543 7411 Hs.436803 NM_003372 ENSG00000155959 VBP1 HIBBJ46|PFD3|PFDN3|VBP-1 VHL binding protein 1 protein-coding 228-303 chr6 146064245 146064420 + 2 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 35134 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 332-262 chr2 123221107 123221347 + 2 NA Intergenic L1M1|LINE|L1 -147746 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 256-170 chr18 1673869 1674107 + 2 NA Intergenic L1MEd|LINE|L1 -314359 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 327-365 chr4 66884564 66884743 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner 537347 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 429-119 chr17 53483028 53483320 + 2 NA Intergenic Intergenic -339753 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 340-299 chr2 220731061 220731370 + 2 NA Intergenic Intergenic -824650 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 545-117 chr2 119592660 119593042 + 2 NA intron (NR_073132, intron 7 of 24) L1M7|LINE|L1 48402 NM_001271049 200373 Hs.496753 NM_001029996 ENSG00000163075 CFAP221 FAP221|PCDP1 cilia and flagella associated protein 221 protein-coding 359-306 chr22 49273475 49273738 + 2 NA Intergenic AluSx|SINE|Alu 269860 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 205-293 chr9 41806734 41806910 + 2 NA Intergenic Intergenic -107821 NR_135136 105376064 Hs.571622 NR_135136 ENSG00000275239 FAM242F - family with sequence similarity 242 member F ncRNA 263-411 chr8 41391243 41391386 + 2 NA Intergenic L1MC3|LINE|L1 -35341 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 503-197 chr3 89573791 89574153 + 2 NA Intergenic AluSg|SINE|Alu 466351 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 281-283 chr3 39727799 39727989 + 2 NA Intergenic Intergenic -81020 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 188-166 chr5 56756156 56756333 + 2 NA Intergenic L1MC1|LINE|L1 16627 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 279-104 chr14 60550029 60550252 + 2 NA Intergenic L1MA5A|LINE|L1 40994 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 293-476 chr9 102252893 102253046 + 2 NA Intergenic Intergenic -266668 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 243-349 chr5 25794384 25794617 + 2 NA Intergenic LTR57-int|LTR|ERVL 603547 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 518-102 chr16 50350044 50350385 + 2 NA intron (NM_013263, intron 4 of 16) intron (NM_013263, intron 4 of 16) 18774 NM_013263 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 459-49 chr11 47340569 47340944 + 2 NA intron (NM_000256, intron 19 of 33) MIRc|SINE|MIR 11946 NM_000256 4607 Hs.524906 NM_000256 ENSG00000134571 MYBPC3 CMD1MM|CMH4|FHC|LVNC10|MYBP-C myosin binding protein C, cardiac protein-coding 542-12 chr1 189979046 189979445 + 2 NA Intergenic L1MA3|LINE|L1 496765 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 169-140 chr8 122233392 122233519 + 2 NA Intergenic Intergenic 335189 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 410-173 chr21 18670283 18670670 + 2 NA intron (NR_109925, intron 2 of 3) L1MA3|LINE|L1 15688 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 248-440 chrX 50428139 50428342 + 2 NA intron (NM_001013742, intron 1 of 27) intron (NM_001013742, intron 1 of 27) 42585 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 310-71 chr11 13027530 13027750 + 2 NA Intergenic Intergenic 18324 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 258-276 chr3 184133262 184133504 + 2 NA Intergenic MIR|SINE|MIR -1975 NM_003907 8893 Hs.283551 NM_003907 ENSG00000145191 EIF2B5 CACH|CLE|EIF-2B|EIF2Bepsilon|LVWM eukaryotic translation initiation factor 2B subunit epsilon protein-coding 408-4 chr1 50250361 50250711 + 2 NA Intergenic Intergenic 140703 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 316-461 chr5 136757801 136758056 + 2 NA Intergenic L1M1|LINE|L1 -370269 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 249-428 chr8 117139549 117139734 + 2 NA intron (NM_173851, intron 1 of 7) L1M4b|LINE|L1 4646 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 307-410 chr5 179345850 179346036 + 2 NA promoter-TSS (NM_021599) promoter-TSS (NM_021599) -482 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 186-8 chr1 153277752 153277866 + 2 NA Intergenic MIRc|SINE|MIR 18122 NM_000427 4014 Hs.251680 NM_000427 ENSG00000203782 LOR - loricrin protein-coding 167-104 chr6 139507019 139507117 + 2 NA Intergenic Intergenic -32472 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 271-188 chr19 32891580 32891755 + 2 NA intron (NM_032816, intron 16 of 18) L1M2|LINE|L1 -21900 NM_001126335 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 384-279 chr5 8798029 8798376 + 2 NA Intergenic L1M3de|LINE|L1 -41530 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 360-366 chr5 62851193 62851545 + 2 NA Intergenic L1M2|LINE|L1 272550 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 445-256 chr7 75946682 75947067 + 2 NA intron (NM_001367562, intron 2 of 16) intron (NM_001367562, intron 2 of 16) 3091 NR_002955 677801 Hs.689708 NR_002955 ENSG00000201643 SNORA14A ACA14a small nucleolar RNA, H/ACA box 14A snoRNA 219-184 chr2 146287704 146287877 + 2 NA Intergenic L1M4|LINE|L1 -299267 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 246-232 chr20 46102481 46102655 + 2 NA Intergenic Intergenic -12606 NM_020967 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 418-199 chr4 157638792 157639033 + 2 NA Intergenic L1M1|LINE|L1 66422 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 181-82 chr20 54360840 54360962 + 2 NA Intergenic Intergenic -114692 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 586-84 chr2 212521465 212522000 + 2 NA intron (NM_001042599, intron 1 of 26) MIR|SINE|MIR 16896 NM_001042599 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 266-360 chr6 48952295 48952469 + 2 NA Intergenic Intergenic 510871 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 258-321 chr5 63249436 63249565 + 2 NA Intergenic L2|LINE|L2 670681 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 360-214 chr2 60148177 60148460 + 2 NA Intergenic MIR3|SINE|MIR 234718 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 322-550 chr8 133925219 133925401 + 2 NA Intergenic MIRb|SINE|MIR 38814 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 332-237 chr2 9238537 9238728 + 2 NA intron (NM_003887, intron 1 of 27) intron (NM_003887, intron 1 of 27) 31820 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 312-448 chr6 49770669 49770908 + 2 NA Intergenic Intergenic 16497 NM_138733 5232 Hs.367727 NM_138733 ENSG00000170950 PGK2 HEL-S-272|PGKB|PGKPS|dJ417L20.2 phosphoglycerate kinase 2 protein-coding 483-135 chr2 225914832 225915193 + 2 NA Intergenic L1MA4|LINE|L1 -227782 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 438-291 chr9 26589172 26589489 + 2 NA Intergenic L1MA9|LINE|L1 303472 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 744 chr1 88634788 88635349 + 2 NA intron (NR_110682, intron 1 of 3) L1M2|LINE|L1 -49076 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 282-423 chr7 46300715 46300948 + 2 NA Intergenic L1MD2|LINE|L1 -379559 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 170-149 chr9 98189681 98189790 + 2 NA intron (NM_052820, intron 1 of 11) MIR3|SINE|MIR 2902 NM_052820 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 1024-12 chr10 116166660 116167197 + 2 NA intron (NM_145793, intron 3 of 8) AluY|SINE|Alu 27861 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 338-533 chr8 47447544 47447820 + 2 NA intron (NM_001080394, intron 8 of 19) Tigger1|DNA|TcMar-Tigger 186744 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 326-581 chrX 38486836 38487121 + 2 NA Intergenic L1PB4|LINE|L1 -74500 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 443-314 chrX 84922514 84922803 + 2 NA Intergenic L1PA13|LINE|L1 -11493 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 286-180 chr19 33662395 33662649 + 2 NA intron (NM_001127896, intron 1 of 3) intron (NM_001127896, intron 1 of 3) -22006 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 343-133 chr14 41487260 41487564 + 2 NA Intergenic Intergenic -119444 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 327-93 chr11 78766726 78766954 + 2 NA intron (NM_001098816, intron 18 of 33) AluSz6|SINE|Alu -191976 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 873-36 chr7 110742802 110743471 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -347870 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 305-421 chr5 12458760 12459059 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -115948 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 312-287 chr20 22088997 22089217 + 2 NA Intergenic L1MB5|LINE|L1 35017 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 377-415 chr8 131286845 131287138 + 2 NA Intergenic MER21C|LTR|ERVL -246082 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 267-402 chr7 75674956 75675124 + 2 NA intron (NM_005338, intron 1 of 30) L1MB3|LINE|L1 63901 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 317-220 chr2 40310361 40310582 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 119833 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 465-72 chr13 76894577 76894944 + 2 NA Intergenic L2a|LINE|L2 -8355 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 271-25 chr1 209259525 209259720 + 2 NA Intergenic Intergenic -65834 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 254-327 chr5 148161349 148161596 + 2 NA Intergenic Intergenic -7074 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 529-132 chr20 54216326 54216833 + 2 NA intron (NM_002623, intron 3 of 3) L1P4|LINE|L1 8492 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 304-184 chr16 62021329 62021549 + 2 NA 5' UTR (NM_001796, exon 2 of 12) 5' UTR (NM_001796, exon 2 of 12) 14999 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 281-245 chr2 216816161 216816338 + 2 NA Intergenic Intergenic 43815 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 229-409 chr9 27875457 27875654 + 2 NA Intergenic Intergenic -301689 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 220-170 chr2 86015247 86015406 + 2 NA Intergenic L2c|LINE|L2 90560 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 199-219 chr6 146172712 146172846 + 2 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 143581 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 472-16 chr1 104809004 104809325 + 2 NA Intergenic L1PB3|LINE|L1 736141 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 471-280 chr9 26273930 26274228 + 2 NA Intergenic Intergenic 207404 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 235-155 chr2 8158693 8158913 + 2 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) 169616 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 307-307 chr3 78165652 78165918 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -116822 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 299-278 chr3 67222831 67222993 + 2 NA Intergenic L1MB8|LINE|L1 -2552 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 343-496 chr7 9412927 9413154 + 2 NA Intergenic Intergenic -221230 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 363-230 chr2 157924190 157924381 + 2 NA Intergenic Intergenic -47955 NM_001111067 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 272-167 chr19 29364182 29364356 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -151118 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 558-146 chr3 189246427 189246870 + 2 NA intron (NM_198485, intron 4 of 5) L1ME4b|LINE|L1 -6054 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 501-22 chr10 55292989 55293315 + 2 NA intron (NM_001354404, intron 2 of 34) THE1B-int|LTR|ERVL-MaLR -305890 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 495-94 chr18 61647501 61647873 + 2 NA Intergenic Intergenic -100489 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 306-227 chr2 30559422 30559651 + 2 NA intron (NM_001304446, intron 3 of 5) intron (NM_001304446, intron 3 of 5) 112290 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 465-318 chrX 52291459 52291870 + 2 NA Intergenic Intergenic 44978 NR_107055 102466880 NR_107055 ENSG00000275335 MIR8088 hsa-mir-8088 microRNA 8088 ncRNA 140-48 chr3 109493407 109493483 + 2 NA intron (NR_109841, intron 4 of 4) L1MC4|LINE|L1 83455 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 354-232 chr2 154059581 154059809 + 2 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 115301 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 198-256 chr9 27395203 27395326 + 2 NA intron (NM_024761, intron 2 of 3) L1MA8|LINE|L1 -98114 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 724-77 chr5 170851619 170852308 + 2 NA Intergenic Intergenic -10055 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 368-389 chr6 50036836 50037047 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 12988 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 496-290 chr8 99648094 99648469 + 2 NA intron (NM_017890, intron 34 of 61) intron (NM_017890, intron 34 of 61) -111420 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 438-81 chr15 89984622 89984956 + 2 NA Intergenic MER57A-int|LTR|ERV1 -16535 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding 613-26 chr11 113355731 113356237 + 2 NA intron (NM_001318533, intron 16 of 21) L1PA13|LINE|L1 -31795 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 285-220 chr2 162248254 162248470 + 2 NA Intergenic HAL1|LINE|L1 -4917 NM_001291807 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 351-393 chr5 114744846 114745062 + 2 NA intron (NR_130785, intron 1 of 12) MSTA-int|LTR|ERVL-MaLR 28459 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 443-285 chr7 111236341 111236736 + 2 NA intron (NM_032549, intron 3 of 5) L1MEc|LINE|L1 145411 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 381-66 chr10 125957635 125957854 + 2 NA intron (NM_001363549, intron 1 of 10) AluSx1|SINE|Alu 15529 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 231-104 chr14 85035159 85035300 + 2 NA Intergenic L1MC3|LINE|L1 -236703 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 227-12 chr1 103776304 103776505 + 2 NA Intergenic Intergenic 26563 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 239-190 chr2 141762633 141762790 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 368990 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 653-107 chr6 129515574 129516138 + 2 NA intron (NM_000426, intron 64 of 64) AluJb|SINE|Alu 194321 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 397-83 chr14 47254445 47254784 + 2 NA intron (NM_001113498, intron 2 of 16) THE1C-int|LTR|ERVL-MaLR 88632 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 386-150 chr19 42658470 42658734 + 2 NA Intergenic L1MCa|LINE|L1 -63678 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 388-27 chr1 195497645 195497839 + 2 NA Intergenic L1MB1|LINE|L1 590973 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 359-379 chr4 187280566 187280806 + 2 NA Intergenic MLT2B2|LTR|ERVL 78700 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 213-255 chr6 163141656 163141851 + 2 NA intron (NM_001080379, intron 4 of 4) L1MD|LINE|L1 50249 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 374-132 chr16 78001500 78001848 + 2 NA Intergenic MIR|SINE|MIR -20874 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 275-143 chr17 53167722 53167945 + 2 NA Intergenic Intergenic 182328 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 382-18 chr1 177005976 177006270 + 2 NA intron (NM_207108, intron 8 of 21) intron (NM_207108, intron 8 of 21) 23322 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 177-141 chr6 130641365 130641509 + 2 NA Intergenic Intergenic -185968 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 225-45 chr10 108200708 108200838 + 2 NA Intergenic Intergenic -131480 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 237-87 chr13 34434702 34434933 + 2 NA TTS (NR_047036) TTS (NR_047036) 86774 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 401-49 chr11 22907352 22907675 + 2 NA Intergenic Intergenic -47039 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 199-218 chr6 133156233 133156407 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 68240 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 306-7 chr1 52548105 52548370 + 2 NA intron (NM_001009881, intron 1 of 29) intron (NM_001009881, intron 1 of 29) 4853 NM_015269 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 514-268 chr7 42152803 42153270 + 2 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 84173 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 400-180 chr2 170567665 170567915 + 2 NA intron (NM_001083615, intron 31 of 33) intron (NM_001083615, intron 31 of 33) 146777 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 174-86 chr3 21141678 21141819 + 2 NA Intergenic Intergenic -263978 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 226-20 chr1 178046265 178046422 + 2 NA Intergenic Intergenic -8336 NR_151484 730102 Hs.733192 NR_037167 ENSG00000242193 CRYZL2P - crystallin zeta like 2, pseudogene pseudo 623-93 chr4 61309049 61309660 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 107182 NM_001371342 333-218 chr19 56441332 56441499 + 2 NA exon (NM_001321356, exon 7 of 7) exon (NM_001321356, exon 7 of 7) 35930 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 228-108 chr15 33069080 33069255 + 2 NA promoter-TSS (NM_001103184) promoter-TSS (NM_001103184) -993 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 363-189 chr18 53109238 53109473 + 2 NA intron (NM_005215, intron 7 of 28) intron (NM_005215, intron 7 of 28) -127746 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 335-446 chr5 156488271 156488441 + 2 NA intron (NM_001128209, intron 2 of 7) L1M2|LINE|L1 161192 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 216-90 chr14 38511241 38511389 + 2 NA Intergenic Intergenic -255222 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 398-182 chr2 207174487 207174771 + 2 NA Intergenic Intergenic -7383 NM_001270943 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 114-21 chr16 30149165 30149256 + 2 NA Intergenic L1MB1|LINE|L1 -25901 NM_001109891 5595 Hs.861 NM_002746 ENSG00000102882 MAPK3 ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK mitogen-activated protein kinase 3 protein-coding 258-18 chr1 158789465 158789682 + 2 NA Intergenic L1MA4|LINE|L1 -11938 NM_001005278 81442 Hs.554487 NM_001005278 ENSG00000188340 OR6N2 OR1-23 olfactory receptor family 6 subfamily N member 2 protein-coding 434-134 chr2 21412613 21412960 + 2 NA Intergenic Intergenic 288800 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 498-72 chr13 34384734 34385150 + 2 NA intron (NR_146542, intron 1 of 3) intron (NR_146542, intron 1 of 3) 36899 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 395-361 chr9 115289372 115289656 + 2 NA intron (NR_163556, intron 2 of 7) L2c|LINE|L2 147696 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 374-317 chr5 111534634 111534920 + 2 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -22180 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 252-237 chr21 27006861 27007094 + 2 NA Intergenic Intergenic -39889 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 466-207 chr5 87026113 87026427 + 2 NA Intergenic L1PA10|LINE|L1 88684 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 368-283 chr3 19835908 19836148 + 2 NA Intergenic L1PREC2|LINE|L1 98189 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 285-363 chr6 14060409 14060636 + 2 NA Intergenic Intergenic -56734 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 351-361 chr4 172692085 172692381 + 2 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) -3316 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 329-12 chr1 90679809 90680068 + 2 NA Intergenic L1MEf|LINE|L1 22188 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 350-505 chr8 36556682 36557001 + 2 NA Intergenic L1PB4|LINE|L1 -227533 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 300-99 chr13 33407625 33407811 + 2 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -72452 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 187-3 chr1 38907946 38908088 + 2 NA intron (NM_001304746, intron 4 of 7) L1MD1|LINE|L1 21502 NM_001304746 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 278-239 chr2 189239046 189239309 + 2 NA Intergenic MER102a|DNA|hAT-Charlie -59416 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 482-47 chr11 15146450 15146906 + 2 NA intron (NM_001042536, intron 1 of 12) L3|LINE|CR1 -2424 NM_001278314 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 335-100 chr11 90469726 90469980 + 2 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 86004 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 411-194 chr3 176034026 176034279 + 2 NA Intergenic L1ME3A|LINE|L1 -210399 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 560-87 chr2 168378094 168378543 + 2 NA Intergenic L1MA3|LINE|L1 -77954 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 603-145 chr6 136985846 136986388 + 2 NA intron (NR_027994, intron 2 of 2) AluSp|SINE|Alu 7114 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 228-187 chr2 213425714 213425888 + 2 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 141337 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 472-199 chr22 30084299 30084637 + 2 NA intron (NM_001329457, intron 2 of 11) MSTD|LTR|ERVL-MaLR 4004 NM_001329457 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 381-191 chr2 57152367 57152599 + 2 NA Intergenic L1PA10|LINE|L1 -755168 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 371-214 chr20 16334048 16334356 + 2 NA intron (NM_024704, intron 24 of 25) intron (NM_024704, intron 24 of 25) 239246 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 241-237 chr3 84897898 84898097 + 2 NA Intergenic L1MA4A|LINE|L1 15907 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 344-349 chr4 37058345 37058643 + 2 NA Intergenic L2b|LINE|L2 56715 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 231-177 chr2 117588987 117589166 + 2 NA Intergenic MIRb|SINE|MIR -225615 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 176-45 chr17 71952442 71952573 + 2 NA Intergenic L2b|LINE|L2 73472 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 266-117 chr14 68062473 68062685 + 2 NA intron (NM_133509, intron 7 of 10) AluSx1|SINE|Alu 238987 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 404-237 chr4 102246376 102246672 + 2 NA Intergenic Intergenic 77788 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 386-308 chr6 48485285 48485565 + 2 NA Intergenic MIRc|SINE|MIR -416736 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 556-205 chr7 46668880 46669368 + 2 NA Intergenic L1MC4|LINE|L1 27998 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 238-388 chr8 99497125 99497299 + 2 NA intron (NM_017890, intron 25 of 61) (AT)n|Simple_repeat|Simple_repeat 39518 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 642-111 chr8 136565199 136565699 + 2 NA intron (NR_147196, intron 2 of 5) L1PA16|LINE|L1 34651 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 281-223 chr2 123402326 123402507 + 2 NA Intergenic L1MB3|LINE|L1 -328935 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 331-281 chr2 128797496 128797686 + 2 NA Intergenic MLT2C2|LTR|ERVL -67009 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 276-245 chr2 161880751 161880936 + 2 NA intron (NM_001354443, intron 9 of 25) intron (NM_001354443, intron 9 of 25) 193372 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 224-194 chr3 40598656 40598803 + 2 NA Intergenic LTR45B|LTR|ERV1 73769 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 349-425 chr5 117656197 117656528 + 2 NA Intergenic L1MC3|LINE|L1 -73999 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 234-200 chr2 205641291 205641490 + 2 NA Intergenic Intergenic -41110 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 252-347 chr5 118788222 118788375 + 2 NA Intergenic Intergenic -186288 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 856-33 chr4 54267418 54267991 + 2 NA exon (NM_001347828, exon 8 of 24) exon (NM_001347828, exon 8 of 24) 33744 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 207-23 chr1 223407185 223407352 + 2 NA Intergenic L1MD|LINE|L1 13853 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 384-20 chr1 180248940 180249235 + 2 NA intron (NM_033343, intron 2 of 5) MIR|SINE|MIR 18823 NM_033343 89884 Hs.658487 NM_033343 ENSG00000121454 LHX4 CPHD4 LIM homeobox 4 protein-coding 334-107 chr12 41611762 41611945 + 2 NA Intergenic Intergenic -152336 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 239-73 chr12 30103403 30103596 + 2 NA Intergenic L1ME1|LINE|L1 -318740 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 315-525 chrX 66652722 66653004 + 2 NA Intergenic L1M3c|LINE|L1 -13565 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 557-24 chr10 113601354 113601760 + 2 NA intron (NM_001322945, intron 34 of 40) intron (NM_001322945, intron 34 of 40) 48504 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 298-504 chr9 93388939 93389110 + 2 NA Intergenic L1MB1|LINE|L1 -42610 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 369-408 chr8 87705863 87706121 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 168023 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 363-393 chr6 112291124 112291436 + 2 NA intron (NR_121193, intron 2 of 2) intron (NR_121193, intron 2 of 2) -36565 NM_001105209 3910 Hs.654572 NM_002290 ENSG00000112769 LAMA4 CMD1JJ|LAMA3|LAMA4*-1 laminin subunit alpha 4 protein-coding 216-156 chr2 7788604 7788773 + 2 NA Intergenic MIR|SINE|MIR 110967 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 222-223 chr21 45777295 45777471 + 2 NA intron (NM_001348243, intron 3 of 15) L1MA4A|LINE|L1 29369 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 332-352 chr3 145231738 145231927 + 2 NA Intergenic Intergenic 837353 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 416-315 chr7 78161274 78161533 + 2 NA intron (NM_001301128, intron 14 of 20) intron (NM_001301128, intron 14 of 20) -185839 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 114-17 chr14 87119260 87119347 + 2 NA Intergenic MER57A-int|LTR|ERV1 213525 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 251-153 chr2 7431319 7431513 + 2 NA intron (NR_038432, intron 4 of 5) CpG 10155 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 264-29 chr1 240652673 240652853 + 2 NA Intergenic Intergenic -40608 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 479-152 chr4 21520992 21521415 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 23453 NM_001035004 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 503-72 chr12 58645631 58645968 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 54097 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 257-136 chr16 60519540 60519727 + 2 NA Intergenic L1MA4A|LINE|L1 -159840 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 256-89 chr12 73977405 73977577 + 2 NA Intergenic Intergenic 315140 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 262-102 chr12 91352939 91353122 + 2 NA Intergenic Intergenic -170213 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 463-283 chr8 82070081 82070429 + 2 NA Intergenic L1MC|LINE|L1 -227969 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 405-31 chr10 57013041 57013284 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 291397 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 320-502 chr7 1631218 1631452 + 2 NA Intergenic MIR3|SINE|MIR 16865 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 649-63 chr20 42666434 42666980 + 2 NA intron (NM_133170, intron 7 of 31) L1ME4a|LINE|L1 -18776 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 230-373 chr8 79006787 79006969 + 2 NA Intergenic MIR3|SINE|MIR 169349 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 277-461 chrX 66711318 66711538 + 2 NA Intergenic Intergenic -72130 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 219-19 chr1 181702667 181702832 + 2 NA intron (NM_001205293, intron 7 of 47) L2a|LINE|L2 219232 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 218-74 chr12 78813349 78813528 + 2 NA Intergenic L1MC4|LINE|L1 -50544 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 395-26 chr1 226401138 226401443 + 2 NA intron (NM_001618, intron 2 of 22) MER66B|LTR|ERV1 6803 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 702-91 chr7 13617970 13618494 + 2 NA Intergenic L1ME1|LINE|L1 368282 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 410-230 chr5 7191980 7192265 + 2 NA Intergenic Intergenic 77232 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 266-296 chr4 91306574 91306740 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 970645 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 291-192 chr18 75424406 75424629 + 2 NA intron (NM_001037331, intron 1 of 2) intron (NM_001037331, intron 1 of 2) 3186 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 363-281 chr3 34937202 34937493 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 456676 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 323-109 chr12 29590796 29590984 + 2 NA intron (NM_001367875, intron 9 of 19) LTR56|LTR|ERV1 -91197 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 323-258 chr2 103861819 103862006 + 2 NA Intergenic Intergenic 546420 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 367-76 chr11 81027497 81027857 + 2 NA Intergenic Intergenic -264874 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 223-314 chr7 17894681 17894837 + 2 NA intron (NM_001350862, intron 2 of 25) intron (NM_001350862, intron 2 of 25) 45735 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 318-411 chr4 117047823 117048058 + 2 NA Intergenic Intergenic 37636 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 227-384 chr8 144978543 144978714 + 2 NA intron (NR_023392, intron 4 of 4) intron (NR_023392, intron 4 of 4) -16237 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 424-28 chr10 74358174 74358457 + 2 NA intron (NM_001369124, intron 4 of 9) intron (NM_001369124, intron 4 of 9) 171009 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 245-19 chr1 174134474 174134665 + 2 NA intron (NR_121197, intron 3 of 3) MIRb|SINE|MIR 24718 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 156-106 chr8 112123514 112123649 + 2 NA Intergenic Intergenic -519912 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 418-32 chr10 99116547 99116948 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 119128 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 316-323 chr20 52732339 52732530 + 2 NA Intergenic Intergenic 111596 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 264-73 chr11 37386301 37386536 + 2 NA Intergenic Intergenic -552183 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 208-140 chr2 214370885 214371043 + 2 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -40090 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 244-378 chr8 119185881 119186041 + 2 NA Intergenic Intergenic -22402 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 297-372 chr5 64586507 64586779 + 2 NA intron (NM_001271891, intron 1 of 3) L2c|LINE|L2 10993 NM_001271890 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 263-342 chr5 159781445 159781666 + 2 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 89829 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 277-443 chr9 32125560 32125814 + 2 NA Intergenic L1ME3A|LINE|L1 -258916 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 450-76 chr14 25953415 25953795 + 2 NA Intergenic Intergenic 599825 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 317-417 chr6 72115817 72116063 + 2 NA intron (NM_014989, intron 4 of 33) intron (NM_014989, intron 4 of 33) -96953 NM_001350429 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 479-67 chr14 79994076 79994455 + 2 NA Intergenic L1MB7|LINE|L1 -217154 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 329-447 chr5 26806111 26806287 + 2 NA Intergenic L1MCa|LINE|L1 232387 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 337-238 chr2 22368914 22369231 + 2 NA Intergenic L1PREC2|LINE|L1 -167407 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 415-166 chr22 34144107 34144381 + 2 NA Intergenic L1PA13|LINE|L1 -221356 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 646-103 chr5 104723242 104723700 + 2 NA Intergenic L1MD|LINE|L1 -376003 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 343-410 chr5 5645187 5645385 + 2 NA Intergenic Intergenic 222609 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 324-344 chr3 40660679 40660856 + 2 NA Intergenic Intergenic 135807 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 219-361 chr8 112077742 112077900 + 2 NA Intergenic L1PB3|LINE|L1 -565672 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 449-220 chr5 125815641 125815936 + 2 NA Intergenic Intergenic 322527 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 282-88 chr12 18539053 18539327 + 2 NA intron (NM_001288774, intron 25 of 32) MIRb|SINE|MIR 198319 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 244-192 chr2 239599775 239599921 + 2 NA Intergenic Intergenic -163012 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 195-215 chr6 75663872 75664015 + 2 NA intron (NM_001100409, intron 8 of 22) intron (NM_001100409, intron 8 of 22) 62063 NM_015571 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 208-139 chr2 208872969 208873148 + 2 NA Intergenic Intergenic 330416 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 121-24 chr2 33952684 33952796 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -114486 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 505-206 chr3 184784057 184784389 + 2 NA Intergenic AluSx3|SINE|Alu -11068 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LINC02069 - long intergenic non-protein coding RNA 2069 ncRNA 250-84 chr12 5905835 5906072 + 2 NA intron (NM_001278596, intron 3 of 25) intron (NM_001278596, intron 3 of 25) 39306 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 187-35 chr12 1277459 1277564 + 2 NA intron (NR_027948, intron 14 of 19) intron (NR_027948, intron 14 of 19) -222980 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 264-108 chr13 48811848 48812079 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 158034 NM_001308476 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 363-410 chr7 31041257 31041489 + 2 NA Intergenic Intergenic -10935 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 456-294 chr7 14893002 14893361 + 2 NA intron (NM_001350717, intron 1 of 24) L2c|LINE|L2 9570 NM_001350723 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 386-142 chr18 63227078 63227368 + 2 NA intron (NM_000633, intron 2 of 2) L1ME3Cz|LINE|L1 92157 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 508-64 chr15 24620711 24621178 + 2 NA Intergenic AluY|SINE|Alu -54450 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 239-203 chr2 207053970 207054166 + 2 NA Intergenic Intergenic 56005 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 285-166 chr18 39537769 39537994 + 2 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) 84294 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 198-91 chr17 71279194 71279313 + 2 NA Intergenic Intergenic -77074 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 329-107 chr11 128113680 128113972 + 2 NA Intergenic L1MEd|LINE|L1 -94940 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 437-234 chr5 173206255 173206589 + 2 NA Intergenic Intergenic 28784 NM_001166176 1482 Hs.54473 NM_004387 ENSG00000183072 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 344-249 chr2 117215334 117215539 + 2 NA Intergenic Intergenic -599255 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 323-173 chr16 8353456 8353662 + 2 NA Intergenic Intergenic 236279 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 348-451 chr6 56959002 56959205 + 2 NA intron (NM_001318539, intron 1 of 3) intron (NM_001318539, intron 1 of 3) 3996 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 249-307 chr4 138509194 138509396 + 2 NA Intergenic L2a|LINE|L2 199584 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 369-99 chr13 103811545 103811829 + 2 NA Intergenic Intergenic 386487 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 366-163 chr17 40025253 40025492 + 2 NA TTS (NR_106944) TTS (NR_106944) 1037 NR_106944 102466757 NR_106944 ENSG00000283721 MIR6884 hsa-mir-6884 microRNA 6884 ncRNA 378-6 chr1 51136379 51136730 + 2 NA intron (NM_001136508, intron 3 of 4) L1PA13|LINE|L1 34326 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 268-211 chr2 139129864 139130039 + 2 NA Intergenic L1MC4|LINE|L1 232627 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 240-192 chr18 62659093 62659257 + 2 NA Intergenic L1MB8|LINE|L1 -56366 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 516-150 chr20 10711476 10711835 + 2 NA Intergenic Intergenic -37656 NM_000214 182 Hs.224012 NM_000214 ENSG00000101384 JAG1 AGS|AGS1|AHD|AWS|CD339|DCHE|HJ1|JAGL1 jagged canonical Notch ligand 1 protein-coding 298-307 chr3 137676472 137676713 + 2 NA Intergenic L1MA3|LINE|L1 -87723 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 337-527 chr7 95800096 95800368 + 2 NA intron (NM_004411, intron 1 of 16) intron (NM_004411, intron 1 of 16) 27726 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 748-58 chr22 49701618 49702194 + 2 NA Intergenic Intergenic -44387 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 268-273 chr4 56064867 56065113 + 2 NA Intergenic Intergenic -105205 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 380-246 chr3 84350743 84351115 + 2 NA Intergenic Intergenic 518646 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 266-256 chr3 98779084 98779287 + 2 NA intron (NM_001271147, intron 6 of 9) intron (NM_001271147, intron 6 of 9) 15878 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 380-260 chr3 161448802 161449174 + 2 NA TTS (NR_102265) TTS (NR_102265) 22561 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 456-295 chr7 17578240 17578542 + 2 NA Intergenic L1PA10|LINE|L1 -19482 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 397-295 chr7 14741173 14741435 + 2 NA intron (NM_001350724, intron 3 of 24) MER41-int|LTR|ERV1 100146 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 240-3 chr1 19000615 19000804 + 2 NA Intergenic L1MEc|LINE|L1 -44033 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 306-265 chr2 214305558 214305723 + 2 NA intron (NR_047660, intron 14 of 14) L1PA13|LINE|L1 -105414 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 543-148 chr20 22947837 22948307 + 2 NA Intergenic HAL1b|LINE|L1 -87348 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 426-305 chr8 139103715 139103937 + 2 NA Intergenic Intergenic -189785 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 220-307 chr5 163669825 163669954 + 2 NA Intergenic Intergenic 164270 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 138-50 chr3 8828554 8828661 + 2 NA Intergenic L1ME3A|LINE|L1 -58993 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 506-92 chr15 25504043 25504450 + 2 NA Intergenic Intergenic -65190 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 224-109 chr16 72006176 72006377 + 2 NA Intergenic Intergenic -2468 NM_001361 1723 Hs.654427 NM_001361 ENSG00000102967 DHODH DHOdehase|POADS|URA1 dihydroorotate dehydrogenase (quinone) protein-coding 197-189 chr7 24441304 24441463 + 2 NA Intergenic Intergenic -132069 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 315-315 chr3 127329507 127329673 + 2 NA intron (NR_110147, intron 3 of 4) intron (NR_110147, intron 3 of 4) -41544 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 383-191 chr2 80944690 80945017 + 2 NA Intergenic Intergenic 522093 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 149-32 chr14 67008089 67008196 + 2 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -181298 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 493-249 chr5 154952195 154952517 + 2 NA intron (NM_014180, intron 3 of 6) intron (NM_014180, intron 3 of 6) 11283 NM_001014990 29093 Hs.483924 NM_014180 ENSG00000082515 MRPL22 HSPC158|L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 412-246 chr5 7651936 7652202 + 2 NA intron (NM_020546, intron 4 of 24) AluSc|SINE|Alu 199064 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 361-146 chr14 82452516 82452809 + 2 NA Intergenic (AGAGAG)n|Simple_repeat|Simple_repeat -189970 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 206-213 chr5 103967790 103967914 + 2 NA Intergenic L1MB1|LINE|L1 -405063 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 590-103 chr3 78244967 78245520 + 2 NA Intergenic Intergenic -196280 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 306-380 chr5 10787520 10787780 + 2 NA Intergenic Intergenic -26416 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 313-365 chr3 172610133 172610406 + 2 NA Intergenic L1MCa|LINE|L1 -14662 NR_146714 105374219 Hs.186269 NR_146714 ENSG00000223387 LINC02068 - long intergenic non-protein coding RNA 2068 ncRNA 333-74 chr10 123832010 123832300 + 2 NA intron (NM_198148, intron 4 of 13) ORSL|DNA|hAT-Tip100 59652 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 246-130 chr15 50532757 50532947 + 2 NA intron (NM_203494, intron 5 of 6) L1MB4|LINE|L1 13814 NM_203494 373509 Hs.677758 NM_203494 ENSG00000170236 USP50 - ubiquitin specific peptidase 50 protein-coding 398-27 chr1 218761907 218762178 + 2 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 156469 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 392-120 chr18 28437488 28437735 + 2 NA Intergenic L1PA16|LINE|L1 -260481 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 380-212 chr20 8116203 8116426 + 2 NA Intergenic Intergenic -15952 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 403-42 chr11 10194014 10194355 + 2 NA intron (NM_030962, intron 1 of 39) MER2|DNA|TcMar-Tigger 100023 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 412-318 chr7 113610349 113610641 + 2 NA Intergenic L2|LINE|L2 308514 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 441-233 chr6 146104943 146105325 + 2 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 75936 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 238-52 chr10 107195465 107195694 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -30873 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 518-230 chr5 56216470 56216825 + 2 NA intron (NM_024669, intron 2 of 11) Tigger1|DNA|TcMar-Tigger 16683 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 331-177 chr15 94066828 94067057 + 2 NA intron (NR_120320, intron 2 of 8) MLT1J|LTR|ERVL-MaLR 40996 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 277-213 chr2 192012260 192012442 + 2 NA intron (NM_001305134, intron 5 of 9) intron (NM_001305134, intron 5 of 9) -165263 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 405-212 chr3 173878392 173878768 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 42216 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 261-131 chr16 64309793 64309994 + 2 NA Intergenic L1MB5|LINE|L1 812170 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 344-489 chr8 67444790 67445013 + 2 NA intron (NR_136224, intron 2 of 4) L2b|LINE|L2 101067 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 353-12 chr1 58946867 58947102 + 2 NA Intergenic L1PA16|LINE|L1 -73492 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 402-255 chr5 7548529 7548745 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 152499 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 311-150 chr14 81734771 81735059 + 2 NA intron (NR_146498, intron 2 of 2) intron (NR_146498, intron 2 of 2) 8223 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 398-349 chr8 76903882 76904160 + 2 NA Intergenic Intergenic 62829 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 543-40 chr10 76485268 76485656 + 2 NA intron (NM_001305581, intron 6 of 6) L1ME3A|LINE|L1 -402582 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 428-54 chr13 55887372 55887703 + 2 NA Intergenic Intergenic 713083 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 284-99 chr12 125449696 125449868 + 2 NA intron (NM_052907, intron 3 of 8) MLT1B|LTR|ERVL-MaLR 123166 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 294-498 chr9 78318953 78319181 + 2 NA intron (NM_021154, intron 7 of 7) intron (NM_021154, intron 7 of 7) 21942 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 269-323 chr5 125277587 125277795 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -215570 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 301-111 chr14 38376816 38377002 + 2 NA Intergenic Intergenic -120816 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 399-5 chr1 83104387 83104661 + 2 NA intron (NR_147074, intron 9 of 10) LTR16A|LTR|ERVL -118316 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 502-281 chr8 135981687 135982178 + 2 NA Intergenic MIR3|SINE|MIR 524476 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 288-288 chr4 16137974 16138177 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -54052 NM_006017 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 307-384 chr5 46269673 46269893 + 2 NA Intergenic ALR/Alpha|Satellite|centr -573403 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 278-225 chr2 112471824 112472007 + 2 NA Intergenic Intergenic -10241 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 167-5 chr1 48996585 48996714 + 2 NA intron (NM_001323575, intron 5 of 12) L2a|LINE|L2 -219680 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 193-137 chr3 29250518 29250680 + 2 NA Intergenic Intergenic 30340 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 759-64 chr7 11547716 11548257 + 2 NA intron (NM_015204, intron 4 of 26) L1PA15|LINE|L1 284212 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 173-33 chr14 47692377 47692493 + 2 NA Intergenic Intergenic -17481 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 160-64 chr3 60264789 60264932 + 2 NA intron (NM_001320900, intron 6 of 9) MER106A|DNA|hAT-Charlie -183951 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 321-210 chr16 26479558 26479790 + 2 NA Intergenic L1MB3|LINE|L1 454437 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 547-244 chr8 111387986 111388480 + 2 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 11594 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 542-196 chr7 9724531 9724960 + 2 NA Intergenic Intergenic 90475 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 374-369 chr7 129324263 129324504 + 2 NA intron (NM_001130720, intron 1 of 16) L1MB7|LINE|L1 -43997 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 332-336 chr3 106088623 106088898 + 2 NA Intergenic Intergenic -219359 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 229-229 chr20 47999316 47999479 + 2 NA Intergenic Intergenic -9280 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 337-582 chr9 78447913 78448108 + 2 NA Intergenic Intergenic 150885 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 439-241 chr6 7231884 7232285 + 2 NA intron (NM_001168344, intron 10 of 11) intron (NM_001168344, intron 10 of 11) 81115 NM_001292008 6745 Hs.114033 NM_003144 ENSG00000124783 SSR1 TRAPA signal sequence receptor subunit 1 protein-coding 778-58 chr6 141286029 141286623 + 2 NA Intergenic L1MA9|LINE|L1 602512 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 667-97 chr6 40017393 40017857 + 2 NA Intergenic Intergenic -83163 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 309-190 chr16 49163859 49164087 + 2 NA Intergenic L1ME1|LINE|L1 117865 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 294-343 chr4 100018946 100019199 + 2 NA intron (NR_125923, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat 68578 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 217-158 chr18 4316097 4316252 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 51572 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 864-2 chr1 178196124 178196694 + 2 NA intron (NM_170692, intron 1 of 17) L1M5|LINE|L1 102305 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 540-89 chr16 54612868 54613257 + 2 NA Intergenic Intergenic 235171 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 298-130 chr14 88946643 88946859 + 2 NA Intergenic Intergenic 122100 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 343-217 chr19 51557883 51558142 + 2 NA Intergenic L1ME3B|LINE|L1 -13271 NM_007147 7728 Hs.119014 NM_007147 ENSG00000105497 ZNF175 OTK18 zinc finger protein 175 protein-coding 281-356 chr5 46347725 46347920 + 2 NA Intergenic ALR/Alpha|Satellite|centr -651442 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 491-10 chr1 218600624 218601019 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 90726 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 256-339 chr5 145916925 145917134 + 2 NA Intergenic Intergenic -19549 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 272-302 chr4 52313536 52313733 + 2 NA Intergenic Intergenic 262330 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 298-444 chr7 132190240 132190428 + 2 NA intron (NM_020911, intron 14 of 31) intron (NM_020911, intron 14 of 31) -70527 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 509-102 chr18 72453952 72454338 + 2 NA Intergenic Intergenic 90197 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 560-154 chr6 120793757 120794196 + 2 NA Intergenic MIR|SINE|MIR 540504 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 314-195 chr15 79277466 79277657 + 2 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) -5161 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 357-394 chr6 129415613 129415840 + 2 NA intron (NM_000426, intron 40 of 64) AluJb|SINE|Alu 294451 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 305-137 chr13 54458760 54459006 + 2 NA Intergenic Intergenic -146835 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 242-347 chr6 85949018 85949243 + 2 NA Intergenic Intergenic -270397 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 292-74 chr11 62947720 62947915 + 2 NA Intergenic Intergenic -26454 NM_000738 1128 Hs.632119 NM_000738 ENSG00000168539 CHRM1 HM1|M1|M1R cholinergic receptor muscarinic 1 protein-coding 211-221 chr5 8171653 8171809 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 285833 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 568-114 chr2 138929411 138929924 + 2 NA Intergenic Intergenic 32343 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 264-300 chr4 106399903 106400097 + 2 NA Intergenic L1MC4a|LINE|L1 -32565 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 574-119 chr4 14044595 14045080 + 2 NA Intergenic Intergenic -67131 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 363-243 chr2 213063566 213063826 + 2 NA intron (NM_001371277, intron 3 of 6) MIRc|SINE|MIR 86741 NM_016260 22807 Hs.604950 NM_016260 ENSG00000030419 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 protein-coding 391-142 chr17 72781137 72781459 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -140826 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 262-94 chr12 30787481 30787703 + 2 NA Intergenic Intergenic -8089 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 535-53 chr12 62491907 62492284 + 2 NA intron (NM_001278469, intron 2 of 35) intron (NM_001278469, intron 2 of 35) 25269 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 397-334 chr8 68047651 68048038 + 2 NA intron (NM_024870, intron 8 of 39) intron (NM_024870, intron 8 of 39) 95798 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 369-384 chr7 38935954 38936286 + 2 NA Intergenic AluSx|SINE|Alu -26920 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 690-54 chr2 23095834 23096333 + 2 NA Intergenic MIRc|SINE|MIR -289096 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 442-251 chr6 66083809 66084133 + 2 NA Intergenic L1PA15|LINE|L1 296092 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 298-168 chr17 65739638 65739875 + 2 NA intron (NR_126542, intron 2 of 5) intron (NR_126542, intron 2 of 5) 86695 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 286-299 chr3 177795675 177795905 + 2 NA Intergenic Intergenic -21075 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 440-72 chr14 88170928 88171194 + 2 NA Intergenic L1PB4|LINE|L1 99850 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 279-406 chr8 13832315 13832462 + 2 NA Intergenic L1MB8|LINE|L1 202698 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 571-86 chr2 179885377 179885773 + 2 NA Intergenic Intergenic -23963 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 229-245 chr3 19383810 19383973 + 2 NA intron (NM_144633, intron 5 of 15) intron (NM_144633, intron 5 of 15) -68960 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 343-166 chr15 86342032 86342297 + 2 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -25196 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 836-46 chr5 9923825 9924327 + 2 NA Intergenic MLT2B4|LTR|ERVL -20252 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 316-291 chr2 142281252 142281560 + 2 NA Intergenic Intergenic -149705 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 343-81 chr11 93888915 93889222 + 2 NA Intergenic MLT2C1|LTR|ERVL -38450 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 307-90 chr11 98101560 98101820 + 2 NA Intergenic L2|LINE|L2 -919259 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 383-22 chr1 181224710 181224928 + 2 NA Intergenic Intergenic -11569 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 278-32 chr10 58510509 58510741 + 2 NA Intergenic L2a|LINE|L2 -2247 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 306-518 chr8 116336589 116336773 + 2 NA Intergenic Intergenic -11622 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 277-102 chr13 73511626 73511818 + 2 NA Intergenic Intergenic -52522 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 242-303 chr5 63665076 63665264 + 2 NA Intergenic Intergenic 297122 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 316-349 chr3 73948895 73949178 + 2 NA Intergenic Intergenic 139792 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 251-359 chr7 7524602 7524847 + 2 NA intron (NM_001037763, intron 3 of 34) intron (NM_001037763, intron 3 of 34) 11149 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 965-11 chr2 226195782 226196624 + 2 NA Intergenic Intergenic 53409 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 299-350 chr4 188575434 188575600 + 2 NA intron (NR_033869, intron 4 of 4) ERVL-B4-int|LTR|ERVL 119939 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 248-436 chr9 136726627 136726758 + 2 NA promoter-TSS (NR_002975) promoter-TSS (NR_002975) 187 NR_002958 677804 Hs.495480 NR_002958 ENSG00000274998 SNORA17A ACA17|SNORA17 small nucleolar RNA, H/ACA box 17A snoRNA 326-338 chr3 78383511 78383753 + 2 NA Intergenic Intergenic -334669 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 253-54 chr10 60881977 60882119 + 2 NA intron (NM_001350906, intron 9 of 12) intron (NM_001350906, intron 9 of 12) 62137 NM_001350904 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 306-128 chr13 68387025 68387178 + 2 NA Intergenic LTR107_Mam|LTR|LTR 498224 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 422-144 chr2 40000372 40000751 + 2 NA intron (NR_038441, intron 2 of 4) MIRb|SINE|MIR 82927 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 467-98 chr16 12847078 12847393 + 2 NA Intergenic Intergenic -43348 NM_018340 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 474-43 chr11 26207775 26208093 + 2 NA intron (NM_001313726, intron 1 of 27) MLT1A0|LTR|ERVL-MaLR 18811 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 359-162 chr16 6123210 6123495 + 2 NA intron (NM_018723, intron 1 of 15) L1MB4|LINE|L1 103649 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 628-92 chr3 193487227 193487677 + 2 NA intron (NM_032279, intron 7 of 29) L1ME4b|LINE|L1 -65761 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 489-41 chr11 27118363 27118670 + 2 NA intron (NM_003986, intron 6 of 8) intron (NM_003986, intron 6 of 8) 77701 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 284-348 chr6 62456248 62456433 + 2 NA Intergenic Intergenic -170113 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 286-24 chr1 188105029 188105214 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 661493 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 330-127 chr12 88553207 88553503 + 2 NA intron (NM_000899, intron 1 of 9) intron (NM_000899, intron 1 of 9) 27116 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 176-128 chr7 37810379 37810504 + 2 NA Intergenic L1PA15|LINE|L1 -38156 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 330-114 chr12 19944070 19944284 + 2 NA Intergenic Intergenic -70508 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 207-227 chr4 124696057 124696202 + 2 NA intron (NM_001167882, intron 1 of 3) L1MEg2|LINE|L1 16603 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 538-79 chr16 51388021 51388399 + 2 NA intron (NR_039672, intron 6 of 6) MER33|DNA|hAT-Charlie -236938 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 258-391 chr8 88012747 88012923 + 2 NA Intergenic L1MC4a|LINE|L1 -138820 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 455-30 chr10 81327377 81327752 + 2 NA Intergenic Intergenic -547630 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 571-99 chr22 34920942 34921422 + 2 NA intron (NR_138042, intron 1 of 4) Tigger1|DNA|TcMar-Tigger 76734 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 298-116 chr14 59822300 59822554 + 2 NA intron (NM_021136, intron 1 of 8) L1PA14|LINE|L1 48349 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 492-8 chr1 96096319 96096744 + 2 NA Intergenic Intergenic 104463 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 417-97 chr16 8511892 8512199 + 2 NA Intergenic Intergenic 77793 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 280-451 chrX 41696984 41697222 + 2 NA 3' UTR (NM_005300, exon 3 of 3) 3' UTR (NM_005300, exon 3 of 3) 8130 NM_001097579 2857 Hs.495989 NM_005300 ENSG00000171659 GPR34 LYPSR1 G protein-coupled receptor 34 protein-coding 214-104 chr14 95623308 95623466 + 2 NA Intergenic Intergenic -28710 NR_152604 27004 Hs.510368 NM_012468 TCL6 TNG1|TNG2 T cell leukemia/lymphoma 6 ncRNA 266-9 chr1 62417230 62417442 + 2 NA Intergenic L1PA10|LINE|L1 -18968 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 552-105 chr2 79675412 79675819 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -26256 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 282-269 chr20 53510460 53510669 + 2 NA Intergenic Intergenic -42206 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 262-347 chr5 97339572 97339744 + 2 NA Intergenic L1M1|LINE|L1 -156411 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 559-63 chr16 47340853 47341269 + 2 NA intron (NM_030790, intron 8 of 17) L1MB4|LINE|L1 120002 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 290-439 chr7 147496715 147496963 + 2 NA intron (NM_014141, intron 10 of 22) intron (NM_014141, intron 10 of 22) -118718 NR_031645 100313895 NR_031645 ENSG00000221442 MIR548F4 MIR548F-4|MIRN548F4|hsa-mir-548f-4 microRNA 548f-4 ncRNA 450-327 chr9 108389729 108389989 + 2 NA Intergenic L1ME1|LINE|L1 466127 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 210-230 chr5 117921350 117921484 + 2 NA intron (NR_104997, intron 1 of 2) L1MA4A|LINE|L1 191056 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 564-49 chr13 111958388 111958900 + 2 NA Intergenic Intergenic -13666 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 193-36 chr11 42467999 42468145 + 2 NA Intergenic Intergenic -214382 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 206-22 chr1 208868139 208868282 + 2 NA Intergenic Intergenic -104244 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 502-233 chr6 64053678 64054032 + 2 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 247019 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 181-105 chr4 54012569 54012719 + 2 NA intron (NM_012110, intron 5 of 5) intron (NM_012110, intron 5 of 5) -25362 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 158-50 chr2 11360538 11360639 + 2 NA Intergenic Intergenic -15151 NM_001321643 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 741-32 chr2 138985784 138986312 + 2 NA Intergenic L1M3c|LINE|L1 88724 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 518-314 chr9 76854130 76854529 + 2 NA intron (NM_001308048, intron 1 of 17) intron (NM_001308048, intron 1 of 17) 51758 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 235-189 chr2 180654590 180654724 + 2 NA Intergenic Intergenic -37447 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 295-358 chr4 124046236 124046455 + 2 NA Intergenic Intergenic 272081 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 307-425 chr6 61204808 61205043 + 2 NA Intergenic MER52A|LTR|ERV1 -369205 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 535-265 chrX 125166349 125166710 + 2 NA Intergenic Intergenic -153342 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 327-493 chr8 90450542 90450832 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 155376 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 230-68 chr11 118637620 118637753 + 2 NA intron (NM_015157, intron 11 of 23) intron (NM_015157, intron 11 of 23) -6314 NR_106773 102466719 NR_106773 ENSG00000284246 MIR6716 hsa-mir-6716 microRNA 6716 ncRNA 230-89 chr12 84086638 84086862 + 2 NA Intergenic Intergenic 826049 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 266-316 chr5 24671917 24672123 + 2 NA Intergenic Intergenic -27042 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 223-288 chr5 124594157 124594364 + 2 NA Intergenic Intergenic 150852 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 243-358 chr5 63224504 63224739 + 2 NA Intergenic HAL1|LINE|L1 645802 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 260-157 chr16 3332218 3332368 + 2 NA Intergenic FLAM_C|SINE|Alu -23596 NM_012368 4993 Hs.258574 NM_012368 ENSG00000168158 OR2C1 OLFmf3|OR2C2P olfactory receptor family 2 subfamily C member 1 protein-coding 149-8 chr1 190952024 190952155 + 2 NA Intergenic L2a|LINE|L2 276409 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 444-228 chr6 156253927 156254278 + 2 NA Intergenic Intergenic -124648 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 350-44 chr10 44606181 44606399 + 2 NA Intergenic L1M4b|LINE|L1 -221193 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 558-82 chr18 66840353 66840814 + 2 NA Intergenic L1PA16|LINE|L1 -236493 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 311-99 chr12 30307502 30307722 + 2 NA Intergenic MER4D0|LTR|ERV1 369632 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 387-170 chr2 79138946 79139257 + 2 NA promoter-TSS (NR_002714) promoter-TSS (NR_002714) -674 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 257-307 chr4 149999779 150000001 + 2 NA Intergenic L2a|LINE|L2 -78555 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 343-223 chr2 15855979 15856265 + 2 NA Intergenic L1M4|LINE|L1 -64277 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 485-309 chr9 81606902 81607244 + 2 NA intron (NM_005077, intron 14 of 19) FLAM_C|SINE|Alu 82462 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 286-350 chr5 33145507 33145733 + 2 NA Intergenic L1M4b|LINE|L1 -84115 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 388-264 chr5 2539502 2539751 + 2 NA Intergenic Intergenic -172965 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 327-14 chr1 102769196 102769519 + 2 NA Intergenic Intergenic 339139 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 234-276 chr4 70753068 70753276 + 2 NA intron (NM_001291994, intron 2 of 13) L1MB7|LINE|L1 18762 NM_001291993 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 545-95 chr18 8407769 8408278 + 2 NA Intergenic Intergenic -40989 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 283-233 chr2 82286650 82286831 + 2 NA Intergenic Intergenic -570063 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 244-182 chr2 191588444 191588682 + 2 NA Intergenic L1ME4b|LINE|L1 -89509 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 560-152 chr6 92986344 92986672 + 2 NA Intergenic Intergenic 433051 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 286-214 chr2 117601664 117601897 + 2 NA Intergenic L2a|LINE|L2 -212911 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 320-563 chr8 114465017 114465193 + 2 NA Intergenic Intergenic -1028166 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 456-349 chrX 52418816 52419155 + 2 NA Intergenic AluJo|SINE|Alu 49964 NM_130777 9502 Hs.409726 NM_130777 ENSG00000155622 XAGE2 CT12.2|GAGED3|XAGE-2|XAGE2B X antigen family member 2 protein-coding 252-159 chr18 1831487 1831685 + 2 NA Intergenic HAL1|LINE|L1 -471957 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 243-110 chr13 59714958 59715170 + 2 NA intron (NM_001258366, intron 26 of 26) intron (NM_001258366, intron 26 of 26) -297654 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 255-405 chr7 145114991 145115212 + 2 NA Intergenic Intergenic -279048 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 222-301 chr5 90053250 90053421 + 2 NA Intergenic (TTGT)n|Simple_repeat|Simple_repeat -36615 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 336-143 chr12 127349543 127349870 + 2 NA Intergenic L1MC1|LINE|L1 -9634 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 290-458 chr8 111568611 111568862 + 2 NA Intergenic Intergenic 192097 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 202-263 chr8 135304721 135304852 + 2 NA Intergenic Intergenic 70655 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 340-383 chr3 180888665 180888894 + 2 NA Intergenic Intergenic -18601 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 261-348 chr7 31239739 31239960 + 2 NA Intergenic Intergenic 100877 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 393-22 chr1 181506031 181506247 + 2 NA intron (NM_001205293, intron 1 of 47) intron (NM_001205293, intron 1 of 47) 22622 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 1139-7 chr3 45863384 45864280 + 2 NA intron (NM_001276379, intron 2 of 9) L1MC5a|LINE|L1 -21713 NR_075080 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 693-78 chr4 187261646 187262265 + 2 NA Intergenic AluSx1|SINE|Alu 59969 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 227-245 chr4 36578200 36578407 + 2 NA intron (NR_149124, intron 3 of 4) L1MA9|LINE|L1 63597 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 210-128 chr2 66327370 66327532 + 2 NA Intergenic Intergenic 30877 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 317-152 chr14 65716189 65716384 + 2 NA intron (NR_038167, intron 7 of 8) L1M1|LINE|L1 245184 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 741-80 chr9 73579159 73579702 + 2 NA Intergenic Intergenic 427565 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 427-113 chr2 50027714 50028017 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -53662 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 281-437 chr8 108929105 108929377 + 2 NA Intergenic Intergenic -141647 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 249-225 chr2 200678475 200678625 + 2 NA Intergenic Intergenic -17173 NR_135011 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 576-37 chr12 125506738 125507229 + 2 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) -115469 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 550-70 chr14 44609057 44609491 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy 101865 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 185-138 chr3 83456295 83456439 + 2 NA Intergenic Intergenic 1413208 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 315-517 chr9 103131599 103131820 + 2 NA Intergenic MER61-int|LTR|ERV1 136376 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 383-130 chr15 67911429 67911753 + 2 NA Intergenic AluJb|SINE|Alu -71546 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 311-563 chrX 117240051 117240225 + 2 NA Intergenic Intergenic -422278 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 484-83 chr16 25720046 25720424 + 2 NA intron (NM_006040, intron 1 of 1) L2a|LINE|L2 28276 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 287-232 chr21 25413876 25414129 + 2 NA intron (NR_024027, intron 4 of 4) intron (NR_024027, intron 4 of 4) 17699 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 309-40 chr10 19399219 19399479 + 2 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 329201 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 753-11 chr10 89486368 89486843 + 2 NA intron (NM_213606, intron 2 of 7) AluJo|SINE|Alu 30614 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 353-233 chr2 16056283 16056634 + 2 NA intron (NR_126559, intron 1 of 3) intron (NR_126559, intron 1 of 3) 6031 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 170-136 chr8 40868100 40868221 + 2 NA intron (NM_024645, intron 1 of 6) intron (NM_024645, intron 1 of 6) 29666 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 383-11 chr1 79751926 79752187 + 2 NA Intergenic Intergenic -745326 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 601-157 chr9 117651139 117651676 + 2 NA intron (NR_109806, intron 2 of 5) MIRb|SINE|MIR 2801 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 748-6 chr1 165518645 165519253 + 2 NA intron (NR_026744, intron 4 of 6) L1PA16|LINE|L1 -25292 NM_001005214 440699 Hs.664975 NM_001005214 ENSG00000162763 LRRC52 - leucine rich repeat containing 52 protein-coding 209-180 chr21 21460613 21460770 + 2 NA intron (NM_001352592, intron 13 of 18) intron (NM_001352592, intron 13 of 18) 276628 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 570-144 chr4 30465703 30466217 + 2 NA Intergenic MLT2B1|LTR|ERVL -254409 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 255-113 chr14 72266622 72266785 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -250117 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 286-57 chr10 128402529 128402728 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 116678 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 197-142 chr3 137516935 137517115 + 2 NA Intergenic Intergenic -247290 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 160-76 chr4 63176960 63177089 + 2 NA Intergenic MER8|DNA|TcMar-Tigger -1015259 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 243-62 chr11 17620208 17620365 + 2 NA intron (NM_001277269, intron 38 of 54) L1MB5|LINE|L1 72913 NM_001292063 340990 Hs.688380 NM_198497 ENSG00000188162 OTOG DFNB18B|MLEMP|OTGN otogelin protein-coding 349-190 chr16 8141136 8141439 + 2 NA Intergenic AluSx3|SINE|Alu 448551 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 341-310 chr21 31047019 31047267 + 2 NA Intergenic Intergenic -8667 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 616-38 chr13 113333360 113333798 + 2 NA intron (NM_024719, intron 5 of 7) AluSz6|SINE|Alu -18094 NR_046541 100874068 Hs.661837 NR_046541 GRTP1-AS1 - GRTP1 antisense RNA 1 ncRNA 278-304 chr4 34473191 34473402 + 2 NA Intergenic Intergenic -203549 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 318-396 chr4 52858283 52858461 + 2 NA Intergenic LTR67B|LTR|ERVL -3945 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 158-45 chr19 4170931 4171055 + 2 NA intron (NM_032607, intron 7 of 9) intron (NM_032607, intron 7 of 9) 11313 NM_001321064 51548 Hs.423756 NM_016539 ENSG00000077463 SIRT6 SIR2L6 sirtuin 6 protein-coding 361-75 chr11 55808215 55808468 + 2 NA Intergenic Intergenic -3026 NM_001004738 219437 Hs.553623 NM_001004738 ENSG00000279395 OR5L1 OR11-151|OST262 olfactory receptor family 5 subfamily L member 1 (gene/pseudogene) protein-coding 294-87 chr12 75846367 75846554 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 185316 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 368-278 chr22 43731599 43731872 + 2 NA exon (NM_022785, exon 8 of 32) exon (NM_022785, exon 8 of 32) 80570 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 343-295 chr20 13669634 13669811 + 2 NA Intergenic AluSq2|SINE|Alu -30786 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 497-101 chr18 52021982 52022319 + 2 NA Intergenic L1MC5|LINE|L1 -318047 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 323-552 chr8 88441526 88441736 + 2 NA Intergenic Intergenic -114148 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 464-98 chr18 35930398 35930731 + 2 NA Intergenic L1MEb|LINE|L1 3578 NR_037497 100500864 NR_037497 ENSG00000265641 MIR3929 - microRNA 3929 ncRNA 191-132 chr3 26006983 26007148 + 2 NA Intergenic Intergenic -133370 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 552-178 chr5 126261711 126262083 + 2 NA Intergenic L1M2|LINE|L1 23278 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 536-259 chrX 109026498 109027010 + 2 NA Intergenic L1MA3|LINE|L1 290214 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 420-312 chr9 102489039 102489320 + 2 NA Intergenic Intergenic -30458 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 296-132 chr14 29838876 29839120 + 2 NA intron (NM_001330069, intron 1 of 18) HSMAR2|DNA|TcMar-Mariner 88098 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 121-17 chr17 61582000 61582091 + 2 NA Intergenic Intergenic 9174 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 220-336 chr7 14224055 14224221 + 2 NA intron (NM_001350717, intron 22 of 24) L1MB8|LINE|L1 -232713 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 192-126 chr21 21117720 21117886 + 2 NA intron (NM_001352595, intron 1 of 14) L2b|LINE|L2 -29359 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 190-45 chr12 115597586 115597699 + 2 NA Intergenic Intergenic 551012 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 247-131 chr15 83859876 83860052 + 2 NA intron (NM_207517, intron 8 of 29) AluJo|SINE|Alu 205841 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 533-133 chr3 69835674 69836034 + 2 NA intron (NM_001354607, intron 2 of 10) L1MA6|LINE|L1 -30370 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 348-407 chr5 53318322 53318611 + 2 NA Intergenic MER39|LTR|ERV1 -162163 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 396-155 chr2 34136487 34136753 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 69394 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 274-191 chr2 15831154 15831348 + 2 NA Intergenic Intergenic -89148 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 293-340 chr5 73347996 73348241 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR 10212 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 407-164 chr2 240338548 240338941 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -96919 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 326-575 chr9 96826680 96826983 + 2 NA intron (NM_001001662, intron 5 of 5) MER68|LTR|ERVL 27683 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 335-381 chr4 44210720 44211011 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 193803 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 418-10 chr1 113482047 113482362 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 91689 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 294-158 chr16 79335498 79335716 + 2 NA Intergenic Intergenic 265130 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 313-321 chr22 34436130 34436342 + 2 NA Intergenic AluSg|SINE|Alu -513348 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 217-214 chr22 34892578 34892787 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 105234 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 316-512 chr7 34507354 34507584 + 2 NA intron (NR_033665, intron 2 of 3) MIRb|SINE|MIR -150749 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 339-69 chr10 85752393 85752603 + 2 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 174767 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 227-348 chr7 53798121 53798305 + 2 NA intron (NR_038371, intron 1 of 5) MIR|SINE|MIR 13718 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 374-390 chr8 103172837 103173141 + 2 NA promoter-TSS (NR_109954) promoter-TSS (NR_109954) -849 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 448-73 chr13 47685229 47685546 + 2 NA Intergenic L1PREC2|LINE|L1 247235 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 488-56 chr11 114543387 114543858 + 2 NA intron (NM_152315, intron 2 of 5) intron (NM_152315, intron 2 of 5) 16259 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 321-381 chr3 112223589 112223887 + 2 NA intron (NM_001320531, intron 12 of 27).2 intron (NM_001320531, intron 12 of 27).2 70478 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 386-312 chr6 149162654 149162989 + 2 NA Intergenic L1ME3G|LINE|L1 -55103 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 450-5 chr1 80870597 80870927 + 2 NA Intergenic Intergenic 229475 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 503-288 chr8 125930018 125930376 + 2 NA intron (NR_038447, intron 3 of 3) L2a|LINE|L2 21000 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 414-357 chr9 113048178 113048485 + 2 NA intron (NM_003408, intron 3 of 3) intron (NM_003408, intron 3 of 3) 8393 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 199-62 chr14 87711452 87711609 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -56236 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 661-27 chr15 25930702 25931290 + 2 NA intron (NR_040082, intron 1 of 4) L1M3c|LINE|L1 28636 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 349-513 chr8 136915607 136915923 + 2 NA Intergenic MER41-int|LTR|ERV1 384967 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 486-189 chr22 25699905 25700259 + 2 NA intron (NM_001362778, intron 12 of 19) intron (NM_001362778, intron 12 of 19) -42106 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 461-46 chr11 35869238 35869540 + 2 NA Intergenic Intergenic -74592 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 1119-10 chr8 46490642 46491563 + 2 NA Intergenic LTR3A|LTR|ERVK 126541 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 377-41 chr10 39290477 39290754 + 2 NA Intergenic ALR/Alpha|Satellite|centr 594019 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 364-249 chr20 53336927 53337125 + 2 NA intron (NM_173485, intron 2 of 2) (TA)n|Simple_repeat|Simple_repeat 151743 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 205-34 chr10 58168017 58168169 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 99801 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 811-26 chr2 106984490 106985087 + 2 NA Intergenic Intergenic -97679 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 269-433 chr9 134529626 134529809 + 2 NA Intergenic FLAM_C|SINE|Alu -112088 NM_001278074 1289 Hs.210283 NM_000093 ENSG00000130635 COL5A1 EDSC|EDSCL1 collagen type V alpha 1 chain protein-coding 325-40 chr1 219860547 219860742 + 2 NA Intergenic Intergenic 68007 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 206-10 chr1 98415990 98416164 + 2 NA Intergenic Intergenic 205366 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 199-191 chr4 168226050 168226210 + 2 NA intron (NM_017631, intron 33 of 37) L1MEg|LINE|L1 92622 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 629-144 chr9 99682838 99683219 + 2 NA intron (NR_109802, intron 3 of 6) MSTA|LTR|ERVL-MaLR 136861 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 368-136 chr14 46723241 46723541 + 2 NA Intergenic L1ME3B|LINE|L1 -71610 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 412-79 chr13 53312508 53312840 + 2 NA Intergenic L2|LINE|L2 -160774 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 316-422 chr5 12846987 12847296 + 2 NA Intergenic L1MA6|LINE|L1 179282 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 340-192 chr16 63562937 63563182 + 2 NA Intergenic Intergenic -1526621 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 468-51 chr11 96497513 96497906 + 2 NA intron (NR_047481, intron 1 of 4) intron (NR_047481, intron 1 of 4) 9168 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 557-161 chr5 82908715 82909081 + 2 NA Intergenic Intergenic -49062 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 306-240 chr2 81571487 81571677 + 2 NA Intergenic Intergenic -104636 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 235-83 chr12 47485472 47485679 + 2 NA Intergenic Intergenic 70567 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 215-322 chr8 123667405 123667584 + 2 NA Intergenic Intergenic -13693 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 371-209 chr20 2671890 2672245 + 2 NA Intergenic LTR40c|LTR|ERVL -7844 NM_001258384 3420 Hs.436405 NM_006899 ENSG00000101365 IDH3B RP46 isocitrate dehydrogenase (NAD(+)) 3 beta protein-coding 361-367 chr5 114564365 114564688 + 2 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) -11515 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 201-88 chr15 62539494 62539644 + 2 NA Intergenic Intergenic 105612 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 237-321 chr6 38724289 38724429 + 2 NA intron (NM_001371, intron 3 of 91) intron (NM_001371, intron 3 of 91) 9048 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 521-166 chr3 148528302 148528689 + 2 NA Intergenic Intergenic -169376 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 467-55 chr11 101131906 101132272 + 2 NA intron (NR_073144, intron 2 of 4) intron (NR_073144, intron 2 of 4) -2276 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 233-386 chr8 125899414 125899572 + 2 NA Intergenic Intergenic 51704 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 202-136 chr2 229814053 229814195 + 2 NA intron (NM_001348330, intron 12 of 41) intron (NM_001348330, intron 12 of 41) -99569 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 300-93 chr12 110999256 110999501 + 2 NA Intergenic Intergenic -34787 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 281-393 chr6 88498718 88498924 + 2 NA Intergenic Intergenic 40548 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 519-241 chr8 129114650 129114990 + 2 NA Intergenic Intergenic 126420 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 292-84 chr11 113908914 113909124 + 2 NA 5' UTR (NM_001363563, exon 1 of 8) 5' UTR (NM_001363563, exon 1 of 8) 178 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 269-213 chr2 168573362 168573616 + 2 NA intron (NM_001256126, intron 3 of 10) intron (NM_001256126, intron 3 of 10) -9454 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 199-150 chr22 30179273 30179399 + 2 NA Intergenic Intergenic -59858 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 311-300 chr20 41583717 41583980 + 2 NA intron (NM_032221, intron 1 of 36) L1MEf|LINE|L1 34529 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 113-52 chr8 105428317 105428408 + 2 NA intron (NM_001362837, intron 2 of 7) intron (NM_001362837, intron 2 of 7) 108819 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 590-151 chr6 139910626 139911044 + 2 NA Intergenic Intergenic 55985 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 261-62 chr11 55801710 55801887 + 2 NA Intergenic Intergenic 6242 NM_001004735 219436 Hs.553622 NM_001004735 ENSG00000186113 OR5D14 OR11-141|OR11-150 olfactory receptor family 5 subfamily D member 14 protein-coding 452-194 chr4 105735861 105736146 + 2 NA intron (NM_001370181, intron 5 of 11) L1MC5a|LINE|L1 25190 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 909-15 chr2 104505551 104506278 + 2 NA non-coding (NR_015399, exon 2 of 4) non-coding (NR_015399, exon 2 of 4) 4595 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 772-55 chr8 89338776 89339303 + 2 NA Intergenic Intergenic 418672 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 574-186 chr8 121024854 121025239 + 2 NA Intergenic L1PA4|LINE|L1 -213000 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 308-477 chr7 156506059 156506262 + 2 NA intron (NR_026865, intron 2 of 3) intron (NR_026865, intron 2 of 3) -34331 NR_024119 64433 Hs.404170 NR_024119 ENSG00000279418 LINC00244 C7orf4|NCRNA00244 long intergenic non-protein coding RNA 244 ncRNA 346-26 chr1 169618353 169618556 + 2 NA intron (NM_003005, intron 2 of 16) intron (NM_003005, intron 2 of 16) 11670 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 509-113 chr2 70438570 70438927 + 2 NA Intergenic L2a|LINE|L2 42892 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 214-38 chr10 57613152 57613360 + 2 NA Intergenic Intergenic -308697 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 346-169 chr15 97706711 97707009 + 2 NA Intergenic Intergenic -146162 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 531-9 chr1 170395540 170395881 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger -111502 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 269-71 chr11 96503873 96504052 + 2 NA intron (NR_047481, intron 1 of 4) LTR46-int|LTR|ERV1 2915 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 254-285 chr4 137419036 137419234 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 113359 NM_001300828 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 508-269 chrX 108997194 108997644 + 2 NA Intergenic Intergenic 260879 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 536-108 chr2 14118575 14118980 + 2 NA Intergenic Intergenic 282181 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 339-93 chr11 42665773 42666054 + 2 NA Intergenic Intergenic -412223 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 224-98 chr15 45774633 45774824 + 2 NA intron (NR_135680, intron 1 of 4) L1MA9|LINE|L1 69533 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 267-119 chr14 100766853 100767054 + 2 NA Intergenic Intergenic 40061 NM_001317172 8788 Hs.116631 NM_003836 ENSG00000185559 DLK1 DLK|DLK-1|Delta1|FA1|PREF1|Pref-1|ZOG|pG2 delta like non-canonical Notch ligand 1 protein-coding 247-82 chr12 32488006 32488146 + 2 NA intron (NM_001304481, intron 1 of 16) intron (NM_001304481, intron 1 of 16) 2104 NM_001330374 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 328-108 chr12 46132934 46133193 + 2 NA Intergenic Intergenic 133453 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 143-40 chr2 80771781 80771915 + 2 NA Intergenic Intergenic 458469 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 328-545 chr7 101575742 101575934 + 2 NA Intergenic L1M4|LINE|L1 -6832 NR_103747 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 251-375 chr7 70517570 70517730 + 2 NA intron (NM_015570, intron 5 of 18) (TA)n|Simple_repeat|Simple_repeat -614494 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 339-167 chr14 74233304 74233496 + 2 NA Intergenic L2a|LINE|L2 -6049 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 430-202 chr3 153619261 153619656 + 2 NA intron (NR_146713, intron 3 of 6) intron (NR_146713, intron 3 of 6) 134963 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 274-280 chr4 42810717 42810891 + 2 NA Intergenic L2b|LINE|L2 -82462 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 263-316 chr5 23944707 23944900 + 2 NA Intergenic L1MC3|LINE|L1 -6545 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 235-48 chr10 82935008 82935151 + 2 NA intron (NR_163253, intron 6 of 10) HAL1ME|LINE|L1 -702159 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 651-70 chr2 152793994 152794492 + 2 NA Intergenic Intergenic 75606 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 222-318 chr6 39577920 39578135 + 2 NA intron (NM_001289020, intron 10 of 21) intron (NM_001289020, intron 10 of 21) -146637 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 305-73 chr10 83255775 83255949 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 421227 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 378-26 chr1 163448649 163448975 + 2 NA Intergenic Intergenic -25621 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 483-32 chr10 130274823 130275181 + 2 NA Intergenic Intergenic 138593 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 277-29 chr1 211452716 211452925 + 2 NA Intergenic L1MA1|LINE|L1 40097 NM_001164688 343035 Hs.632495 NM_183059 ENSG00000198570 RD3 C1orf36|LCA12 retinal degeneration 3, GUCY2D regulator protein-coding 567-143 chr5 12181766 12182143 + 2 NA Intergenic Intergenic -277508 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 139-69 chr5 30573489 30573618 + 2 NA Intergenic L1MC4|LINE|L1 -620133 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 295-243 chr2 210901178 210901394 + 2 NA Intergenic Intergenic 283715 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 325-372 chr3 187846801 187847119 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -101492 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 462-190 chr3 191614375 191614686 + 2 NA Intergenic L1P3|LINE|L1 153367 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 336-305 chr2 192367666 192367955 + 2 NA Intergenic Intergenic -172877 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 310-33 chr1 225136205 225136459 + 2 NA intron (NM_001367479, intron 27 of 85) L1PA11|LINE|L1 206657 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 435-154 chr3 84427225 84427500 + 2 NA Intergenic L1MCc|LINE|L1 442213 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 636-141 chr8 3671175 3671514 + 2 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -942893 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 1123-7 chr15 98334243 98335033 + 2 NA intron (NR_146567, intron 1 of 2) intron (NR_146567, intron 1 of 2) -3080 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 298-383 chr5 152964236 152964461 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 8001 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 170-148 chr9 86671980 86672119 + 2 NA Intergenic Intergenic 275457 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 243-427 chr7 110552627 110552829 + 2 NA Intergenic Intergenic -538278 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 220-121 chr15 93559505 93559689 + 2 NA Intergenic Intergenic -296963 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 268-368 chr7 48069512 48069723 + 2 NA Intergenic L1M5|LINE|L1 -18986 NM_001287426 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 351-395 chr5 118744037 118744298 + 2 NA Intergenic Intergenic 147979 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 644-86 chr6 71795571 71795976 + 2 NA Intergenic Intergenic -90930 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 250-380 chr6 119695434 119695642 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 145730 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 681-25 chr16 64809349 64809795 + 2 NA Intergenic MER112|DNA|hAT-Charlie 312491 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 524-52 chr13 53366675 53367148 + 2 NA Intergenic Intergenic -215011 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 256-94 chr12 114485795 114485938 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -77424 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 335-479 chr6 159409758 159410017 + 2 NA Intergenic L1M4a1|LINE|L1 26356 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 443-23 chr1 189090031 189090434 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 1385778 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 449-8 chr1 100685570 100686012 + 2 NA Intergenic L1MC1|LINE|L1 -33849 NM_080682 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 235-406 chrX 67988773 67988932 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 444229 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 391-198 chr2 239534868 239535136 + 2 NA Intergenic Intergenic 133254 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 250-456 chr9 78082326 78082516 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -50610 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 630-153 chr9 130547724 130548192 + 2 NA Intergenic Intergenic 31536 NR_027440 100272217 Hs.601255 NR_027440 LOC100272217 - uncharacterized LOC100272217 ncRNA 191-131 chr3 3223921 3224074 + 2 NA Intergenic MLT2B1|LTR|ERVL -44280 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 393-184 chr2 203986462 203986794 + 2 NA Intergenic Intergenic 49880 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 630-85 chr3 77019360 77019810 + 2 NA Intergenic Intergenic -20514 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 463-81 chr13 93057962 93058321 + 2 NA TTS (NR_126360) TTS (NR_126360) 12800 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 297-248 chr2 217265671 217265870 + 2 NA Intergenic L1MB3|LINE|L1 -16963 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 175-2 chr1 55771623 55771759 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 173272 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 216-48 chr10 119532063 119532228 + 2 NA intron (NM_001005339, intron 1 of 4) intron (NM_001005339, intron 1 of 4) 4388 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 258-373 chr7 83396097 83396269 + 2 NA intron (NM_001178129, intron 12 of 16) intron (NM_001178129, intron 12 of 16) -233299 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 430-158 chr2 142965653 142966001 + 2 NA intron (NM_001199241, intron 9 of 14) intron (NM_001199241, intron 9 of 14) 88163 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 255-348 chr5 181026633 181026791 + 2 NA Intergenic L1MA8|LINE|L1 -13554 NM_001308245 153579 Hs.546502 NM_152547 ENSG00000165810 BTNL9 BTN3|BTN8|VDLS1900 butyrophilin like 9 protein-coding 212-133 chr19 20622223 20622369 + 2 NA 3' UTR (NM_001076675, exon 4 of 4) 3' UTR (NM_001076675, exon 4 of 4) 39275 NM_001076675 199777 Hs.657001 NM_145297 ENSG00000188171 ZNF626 - zinc finger protein 626 protein-coding 609-128 chr7 52948942 52949287 + 2 NA Intergenic L1MC2|LINE|L1 -86519 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 323-62 chr10 76493332 76493615 + 2 NA intron (NM_001305581, intron 6 of 6) L1MEc|LINE|L1 -394571 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 279-200 chr2 162160114 162160359 + 2 NA intron (NR_110255, intron 1 of 3) intron (NR_110255, intron 1 of 3) -7989 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 303-39 chr10 49372059 49372263 + 2 NA intron (NM_001276451, intron 6 of 6) intron (NM_001276451, intron 6 of 6) 23928 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 353-214 chr18 61174077 61174336 + 2 NA Intergenic L1PA3|LINE|L1 -159224 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 335-74 chr10 114636268 114636523 + 2 NA intron (NM_001322886, intron 1 of 20) intron (NM_001322886, intron 1 of 20) -3998 NM_001352440 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 315-487 chr8 108793108 108793354 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -5637 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 540-65 chr14 40043192 40043621 + 2 NA Intergenic Intergenic -610906 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 454-290 chr7 37363526 37363756 + 2 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) -9973 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 219-193 chr2 230916560 230916721 + 2 NA intron (NM_005683, intron 1 of 1) intron (NM_005683, intron 1 of 1) 8602 NM_005683 9290 Hs.114545 NM_005683 ENSG00000135898 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 371-202 chr2 211268996 211269334 + 2 NA Intergenic Intergenic 651594 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 375-122 chr14 33666849 33667188 + 2 NA intron (NM_001165893, intron 4 of 10) MER33|DNA|hAT-Charlie -41919 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 333-597 chr9 11402159 11402359 + 2 NA Intergenic L1MC1|LINE|L1 789053 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 334-104 chr12 13123244 13123447 + 2 NA Intergenic Intergenic -19678 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 766-51 chr3 133220519 133221180 + 2 NA intron (NM_001282865, intron 1 of 3) MER21C|LTR|ERVL 36272 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 605-47 chr2 8231023 8231501 + 2 NA intron (NR_152741, intron 9 of 9) intron (NR_152741, intron 9 of 9) 97157 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 219-45 chr11 36285496 36285632 + 2 NA intron (NM_001307932, intron 1 of 4) L1MD1|LINE|L1 3860 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 338-528 chr8 36427286 36427558 + 2 NA Intergenic LTR80B|LTR|ERVL -356952 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 521-146 chr21 21879733 21880111 + 2 NA Intergenic Intergenic 132937 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 295-140 chr14 84574096 84574250 + 2 NA Intergenic Intergenic -697759 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 379-204 chr22 25841932 25842303 + 2 NA intron (NM_001318245, intron 17 of 43) Tigger15a|DNA|TcMar-Tigger 99929 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 329-298 chr2 175652005 175652203 + 2 NA Intergenic L1PB1|LINE|L1 350163 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 249-414 chr8 81350754 81350994 + 2 NA Intergenic Intergenic 70338 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 364-61 chr10 53515184 53515424 + 2 NA Intergenic Intergenic -743604 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 244-246 chr3 184375968 184376134 + 2 NA intron (NM_001290028, intron 2 of 5) intron (NM_001290028, intron 2 of 5) 2156 NM_000460 7066 Hs.1166 NM_000460 ENSG00000090534 THPO MGDF|MKCSF|ML|MPLLG|THCYT1|TPO thrombopoietin protein-coding 342-557 chr9 99702470 99702786 + 2 NA intron (NR_109802, intron 3 of 6) L1M6|LINE|L1 117261 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 319-567 chr9 17971826 17972099 + 2 NA Intergenic L1PA4|LINE|L1 392896 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 242-430 chr9 31681566 31681718 + 2 NA Intergenic Intergenic -300152 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 410-129 chr2 22856438 22856680 + 2 NA Intergenic Intergenic 320080 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 264-304 chr5 4104127 4104339 + 2 NA Intergenic Intergenic 508401 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 466-43 chr11 5192741 5193188 + 2 NA Intergenic L1MC2|LINE|L1 7736 NM_001004760 283111 Hs.553670 NM_001004760 ENSG00000176742 OR51V1 OR11-36|OR51A12 olfactory receptor family 51 subfamily V member 1 protein-coding 379-110 chr16 6590440 6590659 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -183260 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 812-11 chr12 13917525 13918239 + 2 NA intron (NM_000834, intron 1 of 12) (TTTTTG)n|Simple_repeat|Simple_repeat 62474 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 462-108 chr17 22737885 22738196 + 2 NA Intergenic ALR/Alpha|Satellite|centr 214929 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 403-80 chr12 93379434 93379714 + 2 NA intron (NM_001301022, intron 1 of 4) intron (NM_001301022, intron 1 of 4) 996 NM_001301022 11163 Hs.506325 NM_019094 ENSG00000173598 NUDT4 DIPP-2B|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P|NUDT4B nudix hydrolase 4 protein-coding 416-237 chr3 181577155 181577406 + 2 NA intron (NR_075091, intron 4 of 7) intron (NR_075091, intron 4 of 7) -33054 NR_075090 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 551-113 chr3 2631680 2632222 + 2 NA intron (NM_175607, intron 4 of 24) AluJo|SINE|Alu -260264 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 357-247 chr21 20831049 20831390 + 2 NA Intergenic MER67D|LTR|ERV1 -28111 NR_024090 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 517-111 chr18 56452530 56452899 + 2 NA Intergenic Intergenic 185878 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 260-81 chr11 82211712 82211913 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 192101 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 498-216 chr5 59964564 59964966 + 2 NA intron (NM_001165899, intron 3 of 16) L2a|LINE|L2 -71039 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 549-118 chr2 147433529 147434050 + 2 NA Intergenic Intergenic -410728 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 329-71 chr10 90235914 90236107 + 2 NA Intergenic L1MEf|LINE|L1 -278637 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 589-134 chr5 156076867 156077288 + 2 NA Intergenic Intergenic -249680 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 611-97 chr3 19468780 19469173 + 2 NA intron (NM_144633, intron 11 of 15) intron (NM_144633, intron 11 of 15) -154045 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 357-420 chr7 92438647 92438900 + 2 NA Intergenic Intergenic -1459 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 464-246 chr7 111425212 111425512 + 2 NA intron (NM_001350961, intron 4 of 7) L1ME2z|LINE|L1 136929 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 554-144 chr3 28003375 28003771 + 2 NA Intergenic AluSq4|SINE|Alu -169437 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 274-327 chr5 164824402 164824616 + 2 NA Intergenic Intergenic 354230 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 421-117 chr18 62416877 62417206 + 2 NA Intergenic L1MC5a|LINE|L1 91731 NM_001278268 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 171-7 chr1 74078185 74078349 + 2 NA intron (NM_001105659, intron 5 of 7) L3b|LINE|CR1 119909 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 294-417 chr6 128615947 128616190 + 2 NA Intergenic AluJr|SINE|Alu -95469 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 270-80 chr12 30266565 30266759 + 2 NA Intergenic L1MA2|LINE|L1 410582 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 212-293 chr7 12087163 12087337 + 2 NA Intergenic Intergenic -124044 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 353-554 chr9 32795572 32795850 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 12171 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 355-122 chr12 13875942 13876239 + 2 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 104266 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 436-140 chr2 121519050 121519294 + 2 NA intron (NM_015282, intron 6 of 38) MIRb|SINE|MIR -11708 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 494-205 chr4 64430639 64431089 + 2 NA Intergenic Intergenic -21404 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 322-215 chr18 8929501 8929724 + 2 NA Intergenic LTR8B|LTR|ERV1 -173087 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 210-234 chr5 132246824 132246987 + 2 NA Intergenic L1MEf|LINE|L1 -10753 NM_001131027 8572 Hs.424312 NM_003687 ENSG00000131435 PDLIM4 RIL PDZ and LIM domain 4 protein-coding 197-207 chr8 116109889 116110018 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 215106 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 429-255 chr6 88768569 88768829 + 2 NA intron (NM_001286428, intron 11 of 13) intron (NM_001286428, intron 11 of 13) 194919 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 369-45 chr10 82139878 82140219 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 92872 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 948-21 chr2 95230136 95230765 + 2 NA Intergenic L1ME3|LINE|L1 -43999 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 303-156 chr16 27018218 27018514 + 2 NA Intergenic Intergenic -48561 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 338-474 chr6 99618167 99618478 + 2 NA Intergenic Intergenic 11548 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 358-254 chr20 23319834 23320178 + 2 NA Intergenic AluSz|SINE|Alu -30785 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 314-372 chr3 43611595 43611850 + 2 NA intron (NM_001346469, intron 1 of 11) intron (NM_001346469, intron 1 of 11) 10204 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 244-94 chr14 62854885 62855063 + 2 NA intron (NM_139318, intron 7 of 10) MLT1G1|LTR|ERVL-MaLR 190484 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 673-66 chr20 12935298 12935791 + 2 NA intron (NR_109872, intron 1 of 1) intron (NR_109872, intron 1 of 1) 1419 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 357-346 chr5 75948263 75948566 + 2 NA Intergenic L2a|LINE|L2 -134969 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 246-307 chr4 156112797 156113039 + 2 NA Intergenic Intergenic -159052 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 312-124 chr13 44932687 44932927 + 2 NA Intergenic Intergenic 56664 NM_012345 26747 Hs.525006 NM_012345 ENSG00000083635 NUFIP1 NUFIP|bA540M5.1 nuclear FMR1 interacting protein 1 protein-coding 696-60 chr2 139073128 139073762 + 2 NA Intergenic Intergenic 176121 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 775-54 chr22 43722514 43722982 + 2 NA intron (NM_198856, intron 6 of 29) L1PA16|LINE|L1 89557 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 158-10 chr10 9656587 9656739 + 2 NA Intergenic Intergenic -361070 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 261 chr1 13533062 13533226 + 2 NA Intergenic Intergenic -19141 NM_001010847 126755 Hs.657356 NM_001010847 ENSG00000162494 LRRC38 - leucine rich repeat containing 38 protein-coding 318-170 chr14 61392913 61393215 + 2 NA intron (NM_006255, intron 2 of 13) L1ME2|LINE|L1 71621 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 374-49 chr11 41639933 41640217 + 2 NA Intergenic L1PA15|LINE|L1 -74493 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 281-37 chr10 30792657 30792815 + 2 NA Intergenic LTR16E2|LTR|ERVL 69517 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 252-187 chr2 55656169 55656402 + 2 NA intron (NM_033109, intron 16 of 27) intron (NM_033109, intron 16 of 27) 37559 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 244-271 chr4 89328956 89329190 + 2 NA Intergenic MIRb|SINE|MIR -21273 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 285-416 chr8 89688992 89689222 + 2 NA Intergenic Intergenic 68604 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 326-520 chr8 52876159 52876476 + 2 NA Intergenic MER4D|LTR|ERV1 -63591 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 305-357 chr3 104491535 104491824 + 2 NA Intergenic Intergenic -875034 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 245-346 chr8 83424492 83424670 + 2 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR 20823 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 319-436 chr5 165151098 165151333 + 2 NA Intergenic Intergenic 680936 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 254-379 chr7 38996437 38996681 + 2 NA intron (NR_138047, intron 3 of 6) intron (NR_138047, intron 3 of 6) 17008 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 340-483 chr6 139060930 139061182 + 2 NA Intergenic L1PREC2|LINE|L1 32311 NM_021243 58527 Hs.600861 NM_021243 ENSG00000146386 ABRACL C6orf115|Costars|HSPC280|PRO2013 ABRA C-terminal like protein-coding 395-59 chr11 96846391 96846665 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 338103 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 460-39 chr10 113481992 113482331 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -68670 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 619-16 chr10 27597456 27597868 + 2 NA Intergenic L1ME1|LINE|L1 93358 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 575-125 chr3 116597453 116597862 + 2 NA Intergenic Intergenic 45184 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 441-219 chr6 22838569 22838966 + 2 NA Intergenic L1M2a1|LINE|L1 -120843 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 453-239 chr7 8064459 8064685 + 2 NA intron (NM_138426, intron 5 of 7) L1PA15|LINE|L1 95776 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 295-364 chr4 171348785 171348949 + 2 NA Intergenic L1MC4|LINE|L1 162683 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 232-172 chr2 71893293 71893444 + 2 NA Intergenic Intergenic 254494 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 204-138 chr2 52367236 52367363 + 2 NA intron (NR_135237, intron 10 of 10) intron (NR_135237, intron 10 of 10) -3349 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 309-126 chr13 55268669 55268934 + 2 NA Intergenic Intergenic 94347 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 387-322 chr6 159870611 159870879 + 2 NA Intergenic L1MA3|LINE|L1 -20243 NM_001366704 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 249-302 chr4 78250192 78250416 + 2 NA intron (NM_001166133, intron 4 of 41) L1ME4a|LINE|L1 -38681 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 252-77 chr11 106596978 106597185 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 345674 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 120-22 chr16 51947230 51947321 + 2 NA Intergenic Intergenic 126660 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 384-295 chr5 80850912 80851176 + 2 NA intron (NM_002439, intron 20 of 23) intron (NM_002439, intron 20 of 23) -109319 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 203-250 chr9 82718615 82718748 + 2 NA Intergenic Intergenic 344461 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 333-274 chr2 154275770 154275949 + 2 NA intron (NM_052917, intron 8 of 12) THE1C-int|LTR|ERVL-MaLR 181579 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 356-450 chr7 43176232 43176416 + 2 NA intron (NM_015052, intron 2 of 29) intron (NM_015052, intron 2 of 29) 25429 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 145-81 chr7 107753196 107753280 + 2 NA intron (NR_024199, intron 3 of 6) MIR3|SINE|MIR -8657 NR_144537 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 318-428 chr5 9748109 9748378 + 2 NA intron (NR_027112, intron 5 of 12) AluYj4|SINE|Alu -106134 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 298-267 chr21 28453307 28453599 + 2 NA Intergenic Intergenic -85865 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 503-110 chr16 6848323 6848671 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 74688 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 391-220 chr22 30466841 30467156 + 2 NA exon (NM_001257378, exon 8 of 14) exon (NM_001257378, exon 8 of 14) 5049 NM_001257379 266629 Hs.505601 NM_174975 ENSG00000100012 SEC14L3 TAP2 SEC14 like lipid binding 3 protein-coding 389-286 chr5 56741323 56741550 + 2 NA Intergenic L1MB4|LINE|L1 31435 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 300-35 chr10 19239869 19240126 + 2 NA intron (NM_001142308, intron 18 of 39) L1MA6|LINE|L1 191196 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 453-60 chr12 119000380 119000775 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 19036 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 370-197 chr18 72281189 72281404 + 2 NA Intergenic L1MA7|LINE|L1 263046 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 261-328 chr6 18667377 18667578 + 2 NA intron (NR_149116, intron 5 of 7) intron (NR_149116, intron 5 of 7) 95693 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 147-30 chr16 10095309 10095401 + 2 NA intron (NM_001134408, intron 2 of 13) L1MC4|LINE|L1 86712 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 309-329 chr22 32705271 32705502 + 2 NA intron (NM_003490, intron 6 of 13) L1PREC2|LINE|L1 -95430 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 169-83 chr4 19766423 19766512 + 2 NA Intergenic L1M2|LINE|L1 -485438 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 363-213 chr2 79790874 79791179 + 2 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 75557 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 402-347 chr8 117530737 117531047 + 2 NA intron (NM_080651, intron 3 of 3) intron (NM_080651, intron 3 of 3) 10179 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 185-13 chr1 184923121 184923299 + 2 NA intron (NM_052966, intron 1 of 13) L1MA3|LINE|L1 51298 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 589-148 chr7 41734257 41734745 + 2 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -31411 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 308-89 chr11 104693450 104693696 + 2 NA Intergenic HAL1|LINE|L1 -84271 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 279-263 chr3 88887199 88887440 + 2 NA Intergenic Intergenic -220302 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 280-134 chr15 27447402 27447603 + 2 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -286183 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 387-216 chr22 34969950 34970247 + 2 NA intron (NR_138042, intron 1 of 4) L2c|LINE|L2 27818 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 327-487 chr8 74419303 74419503 + 2 NA intron (NM_001362931, intron 5 of 5) L1ME1|LINE|L1 69000 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 312-309 chr21 43200149 43200342 + 2 NA Intergenic L1MC5a|LINE|L1 30009 NM_001320719 102724652 Hs.184085 NM_001314050 ENSG00000276076 CRYAA2 CRYAA crystallin alpha A2 protein-coding 256-149 chr16 12708618 12708845 + 2 NA intron (NM_018340, intron 2 of 3) intron (NM_018340, intron 2 of 3) -11590 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 534-187 chr5 2903930 2904307 + 2 NA Intergenic Intergenic -13736 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 340-423 chr4 177151109 177151402 + 2 NA Intergenic L1MA9|LINE|L1 -158619 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 203-7 chr1 60056542 60056710 + 2 NA intron (NM_152377, intron 2 of 11) intron (NM_152377, intron 2 of 11) 17144 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 220-349 chr7 88464673 88464859 + 2 NA Intergenic Intergenic -157872 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 168-61 chr2 143993883 143994014 + 2 NA intron (NM_001354353, intron 7 of 9) intron (NM_001354353, intron 7 of 9) 56881 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 359-255 chr2 175042656 175042917 + 2 NA Intergenic L1PA8A|LINE|L1 -37407 NR_038133 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 268-117 chr14 56394614 56394803 + 2 NA Intergenic L1MC1|LINE|L1 -119623 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 278-427 chr8 121003390 121003608 + 2 NA Intergenic MIR3|SINE|MIR -191453 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 180-49 chr14 81892873 81892977 + 2 NA Intergenic Intergenic -149787 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 335-384 chr4 63065891 63066198 + 2 NA Intergenic L1P4|LINE|L1 -904279 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 218-131 chr18 5922130 5922321 + 2 NA Intergenic Intergenic -26271 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 439-58 chr11 95632597 95632873 + 2 NA Intergenic L3|LINE|CR1 157047 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 332-379 chr4 62141781 62141947 + 2 NA intron (NR_110595, intron 2 of 7) L1P4|LINE|L1 19901 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 259-279 chr4 36170024 36170260 + 2 NA intron (NR_146894, intron 9 of 32) MER5B|DNA|hAT-Charlie 73797 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 464-135 chr2 164228397 164228646 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 339974 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 648-57 chr18 5827691 5828309 + 2 NA Intergenic Intergenic -12695 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 209-331 chr8 107128372 107128511 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 208074 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 219-115 chr15 63177093 63177262 + 2 NA Intergenic Intergenic -12429 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 338-25 chr1 169636932 169637129 + 2 NA Intergenic AluYc|SINE|Alu -6906 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 459-186 chr3 43173440 43173771 + 2 NA Intergenic MER30|DNA|hAT-Charlie -67526 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 232-357 chr7 62797888 62798052 + 2 NA Intergenic ALR/Alpha|Satellite|centr 506086 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 282-96 chr12 38493261 38493413 + 2 NA Intergenic L2a|LINE|L2 176563 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 239-165 chr2 35617739 35617918 + 2 NA Intergenic L1MEg|LINE|L1 146423 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 494-136 chr2 129409615 129409941 + 2 NA Intergenic L1M8|LINE|L1 -135887 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 306-389 chr5 26456624 26456784 + 2 NA Intergenic LTR80A|LTR|ERVL 581882 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 214-121 chr16 78304794 78304960 + 2 NA intron (NM_001291997, intron 4 of 7) L1ME4b|LINE|L1 205223 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 454-338 chr9 83544539 83544983 + 2 NA Intergenic L1PA15-16|LINE|L1 -6360 NM_174938 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 249-373 chr7 4311468 4311649 + 2 NA Intergenic Intergenic -176721 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 390-245 chr3 98912114 98912432 + 2 NA Intergenic Intergenic -10578 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 323-128 chr13 99108653 99108848 + 2 NA Intergenic L1MD|LINE|L1 22027 NR_047482 100861541 Hs.344872 NR_047482 DOCK9-DT DOCK9-AS2 DOCK9 divergent transcript ncRNA 331-47 chr10 37813973 37814156 + 2 NA intron (NM_001352493, intron 5 of 6) L1M4c|LINE|L1 -18889 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 389-144 chr18 30013814 30014116 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -284945 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 255-244 chr22 27247160 27247396 + 2 NA Intergenic LTR33|LTR|ERVL -22599 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 316-192 chr16 9733505 9733739 + 2 NA Intergenic Intergenic -278117 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 861-9 chr16 2352245 2352814 + 2 NA intron (NR_003574, intron 1 of 16) intron (NR_003574, intron 1 of 16) 11607 NR_003574 650655 Hs.376281 NR_003574 ENSG00000238098 ABCA17P ABCA17 ATP binding cassette subfamily A member 17, pseudogene pseudo 321-233 chr17 65334351 65334659 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -123036 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 127-43 chr2 18334566 18334643 + 2 NA Intergenic Intergenic 226049 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 208-228 chr6 27964604 27964728 + 2 NA Intergenic L1MB7|LINE|L1 7425 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 255-276 chr3 177397217 177397369 + 2 NA Intergenic Intergenic -44628 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 236-349 chr8 50499114 50499324 + 2 NA intron (NR_135797, intron 8 of 20) L1ME1|LINE|L1 335088 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 518-279 chr7 67755416 67755845 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -264623 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 317-57 chr10 76186938 76187125 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 404270 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 305-567 chr9 122669656 122669835 + 2 NA Intergenic LTR10G|LTR|ERV1 -5385 NM_001005234 26735 Hs.626839 NM_001005234 ENSG00000171481 OR1L3 OR9-28|OR9-D olfactory receptor family 1 subfamily L member 3 protein-coding 140-56 chr4 127774095 127774222 + 2 NA 3' UTR (NM_031291, exon 6 of 6) 3' UTR (NM_031291, exon 6 of 6) -7638 NM_001317381 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 218-363 chrX 72556176 72556326 + 2 NA intron (NM_001166448, intron 2 of 4) L1PBa|LINE|L1 16592 NM_001166418 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 477-196 chr3 30718750 30719086 + 2 NA Intergenic Intergenic 112317 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 301-159 chr17 43856774 43856959 + 2 NA intron (NM_145273, intron 5 of 6) intron (NM_145273, intron 5 of 6) 9690 NM_145273 146894 Hs.147313 NM_145273 ENSG00000161649 CD300LG CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4 CD300 molecule like family member g protein-coding 287-301 chr5 13842257 13842408 + 2 NA intron (NM_001369, intron 32 of 78) AluSq2|SINE|Alu 102148 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 292-269 chr22 33655988 33656192 + 2 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) 48830 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 508-93 chr19 53630626 53630882 + 2 NA Intergenic Intergenic -1302 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 707-107 chr8 126943546 126943988 + 2 NA Intergenic L1MB7|LINE|L1 -69387 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 287-348 chr6 47493168 47493331 + 2 NA intron (NM_012120, intron 1 of 17) L1MCa|LINE|L1 15460 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 518-18 chr10 236836 237258 + 2 NA intron (NM_001370114, intron 5 of 13) intron (NM_001370114, intron 5 of 13) 57053 NM_001202467 10771 Hs.292265 NM_006624 ENSG00000015171 ZMYND11 BRAM1|BS69|MRD30 zinc finger MYND-type containing 11 protein-coding 768-20 chr16 5591756 5592283 + 2 NA Intergenic L1ME3G|LINE|L1 24231 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 291-144 chr14 99847316 99847514 + 2 NA intron (NM_004434, intron 1 of 21) AluJr4|SINE|Alu 54002 NM_004434 2009 Hs.12451 NM_004434 ENSG00000066629 EML1 BH|ELP79|EMAP|EMAPL|HuEMAP EMAP like 1 protein-coding 375-155 chr16 50429891 50430147 + 2 NA Intergenic Intergenic -34886 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 612-101 chr4 64026676 64027009 + 2 NA Intergenic L1PA15-16|LINE|L1 382608 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 281-423 chr7 134968262 134968474 + 2 NA 3' UTR (NM_004342, exon 14 of 14) 3' UTR (NM_004342, exon 14 of 14) -18140 NM_001367812 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 418-172 chr3 177859186 177859435 + 2 NA intron (NR_110826, intron 1 of 2) L1PA10|LINE|L1 42445 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 535-135 chr2 132834959 132835487 + 2 NA intron (NM_207481, intron 11 of 17) L1PB4|LINE|L1 -80334 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 401-25 chr10 34197472 34197757 + 2 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -424934 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 385-344 chr6 146346459 146346698 + 2 NA intron (NM_001278065, intron 4 of 9) intron (NM_001278065, intron 4 of 9) -197255 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 296-102 chr12 39570193 39570478 + 2 NA intron (NM_005164, intron 9 of 9) L1MA6|LINE|L1 49468 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 214-338 chr8 130382322 130382475 + 2 NA intron (NM_001247996, intron 2 of 30) L2a|LINE|L2 61262 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 372-123 chr12 112373241 112373555 + 2 NA intron (NM_001109662, intron 1 of 75) AluSz|SINE|Alu 9033 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 220-38 chr10 11296879 11297028 + 2 NA intron (NM_001025076, intron 9 of 13) intron (NM_001025076, intron 9 of 13) 47721 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 508-19 chr1 240936180 240936523 + 2 NA intron (NM_001350116, intron 5 of 16) intron (NM_001350116, intron 5 of 16) -195921 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 212-155 chr2 80041789 80041995 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -175309 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 334-413 chr5 26179582 26179848 + 2 NA Intergenic Intergenic 858871 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 145-29 chr14 82306190 82306320 + 2 NA Intergenic Intergenic -336377 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 443-89 chr14 48425681 48425985 + 2 NA Intergenic Intergenic -630819 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 266-130 chr15 70381161 70381386 + 2 NA Intergenic Intergenic 124655 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 316-96 chr11 42134964 42135267 + 2 NA Intergenic L1MA1|LINE|L1 -49657 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 226-364 chr8 134853937 134854125 + 2 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 4096 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 383-23 chr1 225087807 225088043 + 2 NA intron (NM_001367479, intron 21 of 85) L1ME1|LINE|L1 158250 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 340-362 chr3 67831703 67831912 + 2 NA intron (NR_109992, intron 3 of 6) THE1B-int|LTR|ERVL-MaLR -159785 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 260-137 chr14 86151745 86151980 + 2 NA Intergenic MIR|SINE|MIR 217184 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 415-75 chr14 75314021 75314289 + 2 NA Intergenic MIR|SINE|MIR 19751 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 524-111 chr2 49562293 49562710 + 2 NA Intergenic Intergenic -407974 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 382-337 chr5 121106123 121106355 + 2 NA Intergenic Intergenic -216311 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 305-158 chr14 83124846 83125099 + 2 NA Intergenic MER67A|LTR|ERV1 482340 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 396-224 chr3 100992424 100992747 + 2 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 905 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 313-415 chr5 2421918 2422100 + 2 NA Intergenic L1MEf|LINE|L1 -109808 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 246-21 chr1 195473420 195473646 + 2 NA Intergenic Intergenic 615182 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 486-290 chr8 65421683 65422085 + 2 NA Intergenic AluJb|SINE|Alu 140782 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 289-264 chr20 42099250 42099529 + 2 NA intron (NM_133170, intron 27 of 31) intron (NM_133170, intron 27 of 31) -481012 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 638-174 chrX 81006140 81006510 + 2 NA Intergenic L1PB1|LINE|L1 195588 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 597-82 chr20 2368889 2369393 + 2 NA Intergenic HAL1|LINE|L1 -11760 NM_001254734 343641 Hs.452039 NM_198994 ENSG00000166948 TGM6 SCA35|TG6|TGM3L|TGY|dJ734P14.3 transglutaminase 6 protein-coding 243-27 chr1 221291736 221291914 + 2 NA Intergenic Intergenic 44471 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 514-103 chr15 93650782 93651135 + 2 NA Intergenic Intergenic -205602 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 266-160 chr19 21392674 21392861 + 2 NA Intergenic Intergenic -4366 NM_175910 284443 Hs.656558 NM_145326 ENSG00000196268 ZNF493 - zinc finger protein 493 protein-coding 443-198 chr3 65116837 65117235 + 2 NA Intergenic L2b|LINE|L2 -429036 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 314-174 chr14 68449293 68449567 + 2 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 179357 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 392-228 chr4 63295441 63295799 + 2 NA Intergenic Intergenic 1113830 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 273-131 chr14 56061205 56061367 + 2 NA Intergenic MIR3|SINE|MIR -57125 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 214-178 chr2 194027192 194027400 + 2 NA Intergenic Intergenic -316973 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 378-339 chr5 53184887 53185229 + 2 NA Intergenic L1PA7|LINE|L1 75216 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 340-197 chr16 87534795 87534975 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 40698 NR_110943 101928737 Hs.579009 NR_110943 ENSG00000260750 LOC101928737 - uncharacterized LOC101928737 ncRNA 351-107 chr13 47007397 47007650 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -110447 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 186-139 chr6 54059937 54060076 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -12412 NR_046710 100873951 NR_046710 MLIP-AS1 - MLIP antisense RNA 1 ncRNA 380-287 chr4 123548530 123548726 + 2 NA Intergenic Intergenic -101363 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 652-128 chr9 78846611 78847203 + 2 NA Intergenic L1M1|LINE|L1 298759 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 635-22 chr12 118917889 118918429 + 2 NA Intergenic Intergenic -63382 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 380-122 chr14 56283792 56284078 + 2 NA intron (NM_021255, intron 3 of 5) intron (NM_021255, intron 3 of 5) 165524 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 582-60 chr18 21726717 21727145 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -14398 NM_020774 57534 Hs.140903 NM_020774 ENSG00000101752 MIB1 DIP-1|DIP1|LVNC7|MIB|ZZANK2|ZZZ6 mindbomb E3 ubiquitin protein ligase 1 protein-coding 335-458 chr6 45246543 45246805 + 2 NA intron (NM_001350325, intron 2 of 10) L1MC|LINE|L1 -48904 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 495-74 chr16 8429545 8429828 + 2 NA Intergenic L1PA11|LINE|L1 160152 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 148-20 chr13 26267160 26267237 + 2 NA intron (NM_001318368, intron 1 of 12) intron (NM_001318368, intron 1 of 12) 13069 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 285-250 chr21 25745236 25745379 + 2 NA exon (NM_002040, exon 3 of 10) exon (NM_002040, exon 3 of 10) -9653 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 450-174 chr21 22470556 22470940 + 2 NA Intergenic L1MDa|LINE|L1 372131 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 477-154 chr2 80415040 80415406 + 2 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 101844 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 491-178 chr4 3797512 3797814 + 2 NA Intergenic Intergenic 31278 NM_000683 152 Hs.123022 NM_000683 ENSG00000184160 ADRA2C ADRA2L2|ADRA2RL2|ADRARL2|ALPHA2CAR adrenoceptor alpha 2C protein-coding 495-124 chr2 191984994 191985362 + 2 NA intron (NM_001305134, intron 7 of 9) MIRc|SINE|MIR -138090 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 359-179 chr17 15025532 15025877 + 2 NA intron (NR_135638, intron 1 of 1) intron (NR_135638, intron 1 of 1) -5271 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 158-34 chr15 70249110 70249234 + 2 NA Intergenic Intergenic -151255 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 544-185 chr5 114770054 114770413 + 2 NA intron (NR_130785, intron 1 of 12) L1MA2|LINE|L1 3180 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 383-376 chr8 71993074 71993408 + 2 NA intron (NR_033652, intron 4 of 4) L1MB5|LINE|L1 82343 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 496-79 chr14 50674016 50674394 + 2 NA Intergenic MER21B|LTR|ERVL -5899 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 476-129 chr19 57537641 57537997 + 2 NA exon (NM_153263, exon 3 of 3) exon (NM_153263, exon 3 of 3) 10463 NM_001199295 256051 Hs.744289 NM_153263 ENSG00000121406 ZNF549 - zinc finger protein 549 protein-coding 679-117 chrX 58021363 58021986 + 2 NA Intergenic L1PREC2|LINE|L1 -111041 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 361-227 chr2 108093833 108094120 + 2 NA Intergenic L1MA1|LINE|L1 -41221 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 340-282 chr2 141670984 141671296 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 460561 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 288-224 chr20 20128904 20129174 + 2 NA intron (NM_015585, intron 8 of 26) L1MA4|LINE|L1 72393 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 357-498 chrX 122366336 122366564 + 2 NA Intergenic Intergenic -817793 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 270-190 chr2 121838947 121839085 + 2 NA Intergenic AluSp|SINE|Alu 83365 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 175-50 chr14 66420138 66420250 + 2 NA Intergenic Intergenic -66177 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 394-78 chr12 27205416 27205747 + 2 NA Intergenic AluY|SINE|Alu -38705 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 379-168 chr2 114572347 114572655 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 110924 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 239-384 chr7 97545363 97545532 + 2 NA Intergenic L1MD1|LINE|L1 -186639 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 290-260 chr21 45714937 45715158 + 2 NA intron (NM_001348238, intron 2 of 16) L1ME3Cz|LINE|L1 -32967 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 182-157 chr6 129357483 129357600 + 2 NA intron (NM_000426, intron 32 of 64) intron (NM_000426, intron 32 of 64) 352636 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 311-358 chr3 180064540 180064815 + 2 NA Intergenic MIRb|SINE|MIR -27740 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 129-3 chr10 10471746 10471820 + 2 NA intron (NM_001326317, intron 1 of 14) L1ME2|LINE|L1 9233 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 283-198 chr18 45125535 45125715 + 2 NA Intergenic Intergenic -42338 NM_001371319 262-77 chr11 50384708 50384861 + 2 NA Intergenic MER11A|LTR|ERVK -24363 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 404-283 chr6 164780274 164780604 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 41624 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 242-13 chr1 118184239 118184420 + 2 NA intron (NM_206996, intron 1 of 48) intron (NM_206996, intron 1 of 48) 899 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 389-390 chrUn_KI270442v1 79868 80204 + 2 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 409-192 chr22 47313254 47313592 + 2 NA Intergenic L1ME1|LINE|L1 -32148 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 294-352 chr4 179323416 179323656 + 2 NA Intergenic Intergenic -1415600 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 303-3 chr1 71132975 71133131 + 2 NA intron (NR_046217, intron 2 of 3) L1MA9|LINE|L1 51729 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 155-7 chr1 87384642 87384735 + 2 NA Intergenic Intergenic -13033 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 206-17 chr1 169300119 169300295 + 2 NA intron (NR_104229, intron 5 of 12) intron (NR_104229, intron 5 of 12) 67590 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 345-178 chr15 83687315 83687538 + 2 NA intron (NM_207517, intron 2 of 29) MER33|DNA|hAT-Charlie 33303 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 318-403 chr4 70743638 70743840 + 2 NA intron (NM_001291994, intron 2 of 13) intron (NM_001291994, intron 2 of 13) 9329 NM_001291993 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 445-7 chr1 75489982 75490335 + 2 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 120956 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 378-112 chr12 129119352 129119702 + 2 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) 9837 NR_104172 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 906-25 chr5 41296068 41296721 + 2 NA Intergenic Intergenic -34925 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 317-263 chr2 210276736 210277002 + 2 NA Intergenic L2c|LINE|L2 26746 NM_079422 4632 Hs.187338 NM_079420 ENSG00000168530 MYL1 MLC1F|MLC3F|MYOFTA myosin light chain 1 protein-coding 228-264 chr5 35889604 35889824 + 2 NA Intergenic L2|LINE|L2 32823 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 326-476 chr6 163014000 163014324 + 2 NA intron (NM_001080379, intron 2 of 4) L1PA16|LINE|L1 39999 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 318-311 chr20 237974 238261 + 2 NA Intergenic Intergenic 10859 NM_080831 140881 Hs.112087 NM_080831 ENSG00000125903 DEFB129 C20orf87|DEFB-29|DEFB29|bA530N10.3|hBD-29 defensin beta 129 protein-coding 229-333 chr6 54581696 54581847 + 2 NA Intergenic L1ME2|LINE|L1 -265000 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 273-378 chr5 178847992 178848253 + 2 NA Intergenic Intergenic -11831 NM_058230 117608 Hs.724051 NM_058230 ENSG00000178338 ZNF354B KID2 zinc finger protein 354B protein-coding 313-278 chr2 144341483 144341716 + 2 NA Intergenic Intergenic -8530 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 309-384 chr4 43899274 43899509 + 2 NA Intergenic Intergenic -117470 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 284-309 chr5 9739263 9739515 + 2 NA intron (NR_027112, intron 5 of 12) intron (NR_027112, intron 5 of 12) -109038 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 225-263 chr5 8095969 8096122 + 2 NA Intergenic Intergenic 226897 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 310-232 chr2 51978255 51978476 + 2 NA intron (NR_135237, intron 7 of 10) L1MD1|LINE|L1 -392283 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 502-12 chr1 117788947 117789233 + 2 NA Intergenic L2c|LINE|L2 140531 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 459-28 chr10 45565245 45565556 + 2 NA intron (NM_145021, intron 1 of 6) AluJb|SINE|Alu 29506 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 295-445 chr7 84839885 84840157 + 2 NA Intergenic Intergenic 281910 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 356-86 chr11 85376964 85377254 + 2 NA intron (NM_001142699, intron 3 of 27) MIR|SINE|MIR 250161 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 275-65 chr11 56543363 56543592 + 2 NA promoter-TSS (NM_001005245) promoter-TSS (NM_001005245) -220 NM_001005245 219487 Hs.553632 NM_001005245 ENSG00000255223 OR5M11 OR11-199 olfactory receptor family 5 subfamily M member 11 protein-coding 490-201 chr4 66339308 66339740 + 2 NA Intergenic Intergenic 62700 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 276-286 chr3 23307523 23307755 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 104312 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 300-109 chr14 45385330 45385536 + 2 NA Intergenic LTR16E1|LTR|ERVL -132231 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 541-228 chr8 25639539 25639935 + 2 NA Intergenic L1MB2|LINE|L1 180504 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 183-173 chr9 106255157 106255313 + 2 NA Intergenic L1ME1|LINE|L1 -345693 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 381-52 chr10 66122476 66122706 + 2 NA intron (NM_001127384, intron 13 of 17) L1MCa|LINE|L1 551166 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 392-147 chr2 67429342 67429609 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger 32142 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 287-98 chr11 106691873 106692106 + 2 NA intron (NM_001256424, intron 8 of 8) intron (NM_001256424, intron 8 of 8) 326487 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 251-209 chr21 25473770 25473951 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -42159 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 291-48 chr10 45038160 45038415 + 2 NA Intergenic L1PB1|LINE|L1 37364 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 317-288 chr22 32711409 32711631 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -89296 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 191-173 chr5 82108318 82108463 + 2 NA intron (NM_031482, intron 3 of 7) (TATA)n|Simple_repeat|Simple_repeat 136367 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 192-26 chr10 67602581 67602745 + 2 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 62997 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 480-118 chr18 4070882 4071221 + 2 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 108698 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 226-112 chr16 13798947 13799081 + 2 NA Intergenic L1ME4b|LINE|L1 -121143 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 728-4 chr1 86889790 86890469 + 2 NA intron (NR_144512, intron 2 of 4) L2c|LINE|L2 23997 NM_004261 9403 Hs.362728 NM_004261 ENSG00000183291 SELENOF SEP15 selenoprotein F protein-coding 149-18 chr10 102458678 102458783 + 2 NA Intergenic Intergenic -2665 NM_024789 79847 Hs.309069 NM_024789 ENSG00000138111 MFSD13A C10orf77|TMEM180|bA18I14.8 major facilitator superfamily domain containing 13A protein-coding 316-42 chr1 219302534 219302822 + 2 NA Intergenic MIRb|SINE|MIR 127709 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 259-295 chr4 127696102 127696341 + 2 NA intron (NM_015693, intron 8 of 15) L1MC1|LINE|L1 -34179 NM_031291 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 542-214 chr8 10178639 10179032 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 83184 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 307-239 chr2 81871023 81871177 + 2 NA Intergenic Intergenic -404154 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 357-320 chr4 103317608 103317834 + 2 NA Intergenic L1M4c|LINE|L1 -107321 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 517-285 chr9 28519132 28519632 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 199923 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 363-368 chr5 111833159 111833342 + 2 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -75032 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 317-424 chr6 110100232 110100407 + 2 NA 3' UTR (NM_001024936, exon 9 of 9) 3' UTR (NM_001024936, exon 9 of 9) 79351 NM_003931 8936 Hs.75850 NM_003931 ENSG00000112290 WASF1 SCAR1|WAVE|WAVE1 WASP family member 1 protein-coding 284-300 chr4 155496754 155496992 + 2 NA Intergenic Intergenic -119908 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 444-205 chr5 120753663 120753991 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 222363 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 345-205 chr17 54788694 54788900 + 2 NA Intergenic Intergenic -111894 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 530-124 chr2 57944028 57944425 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 36575 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 373-277 chr4 15106323 15106554 + 2 NA intron (NR_125911, intron 2 of 5) MER21C|LTR|ERVL 103957 NM_182485 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 471-217 chr5 144468964 144469427 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 263804 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 312-8 chr1 55687927 55688141 + 2 NA Intergenic Intergenic 256929 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 143-54 chr3 81051097 81051218 + 2 NA intron (NR_132411, intron 1 of 1) L1MA9|LINE|L1 57289 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 295-232 chr2 163490997 163491200 + 2 NA Intergenic Intergenic 244910 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 258-168 chr18 22949095 22949247 + 2 NA intron (NM_002894, intron 3 of 18) MIR|SINE|MIR 15295 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 500-261 chr6 162043999 162044468 + 2 NA intron (NM_013988, intron 2 of 8) intron (NM_013988, intron 2 of 8) 573256 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 510-243 chr6 35790082 35790432 + 2 NA intron (NM_001348773, intron 2 of 2) intron (NM_001348773, intron 2 of 2) 7066 NM_001252597 1208 Hs.1340 NM_001832 ENSG00000137392 CLPS - colipase protein-coding 254-286 chr4 149885924 149886146 + 2 NA Intergenic Intergenic -70192 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 441-185 chr4 101936236 101936654 + 2 NA intron (NM_017935, intron 7 of 16) (ATAT)n|Simple_repeat|Simple_repeat 122603 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 394-256 chr5 19719702 19720004 + 2 NA intron (NM_001349562, intron 5 of 13) (AAAG)n|Simple_repeat|Simple_repeat 166419 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 279-384 chr7 26842386 26842607 + 2 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 15227 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 446-12 chr1 80119376 80119796 + 2 NA Intergenic MER51-int|LTR|ERV1 -416169 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 184-131 chr4 186771024 186771146 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -47229 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 192-97 chr2 80360970 80361085 + 2 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 47648 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 667-19 chr10 133620192 133620855 + 2 NA Intergenic MLT2B4|LTR|ERVL 6272 NM_001080998 441581 Hs.690471 NM_001080998 ENSG00000225899 FRG2B - FSHD region gene 2 family member B protein-coding 287-254 chr3 95852711 95852934 + 2 NA Intergenic Intergenic -169629 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 437-109 chr18 33717778 33718063 + 2 NA intron (NM_030632, intron 8 of 11) intron (NM_030632, intron 8 of 11) 139701 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 206-70 chr14 82955091 82955241 + 2 NA Intergenic Intergenic 312534 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 318-552 chr8 124247598 124247883 + 2 NA promoter-TSS (NR_125420) promoter-TSS (NR_125420) -342 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 324-95 chr11 82656572 82656772 + 2 NA Intergenic L1MA9|LINE|L1 77192 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 391-185 chr2 114865691 114865988 + 2 NA intron (NM_001321910, intron 2 of 26) AluSx|SINE|Alu -32291 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 305-488 chr6 151214543 151214834 + 2 NA intron (NR_125868, intron 1 of 2) L1MA4A|LINE|L1 13769 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 209-302 chr7 81753875 81754063 + 2 NA intron (NM_001010934, intron 4 of 4) intron (NM_001010934, intron 4 of 4) 16078 NM_001010931 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 678-112 chr9 113843187 113843609 + 2 NA Intergenic Intergenic -32884 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 350-21 chr1 168519884 168520149 + 2 NA Intergenic MIRc|SINE|MIR 23981 NM_003175 6846 Hs.458346 NM_003175 ENSG00000143185 XCL2 SCM-1b|SCM1B|SCYC2 X-C motif chemokine ligand 2 protein-coding 345-98 chr11 100626261 100626457 + 2 NA Intergenic AluSx|SINE|Alu -60929 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 328-343 chr3 39826485 39826704 + 2 NA intron (NM_001284424, intron 1 of 15) L1MA5A|LINE|L1 16934 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 522-222 chr6 61941584 61941966 + 2 NA intron (NR_146874, intron 4 of 13) L1MA4A|LINE|L1 344450 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 338-187 chr15 83161722 83162031 + 2 NA intron (NM_016073, intron 2 of 5) L4_A_Mam|LINE|RTE-X 45947 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 389-229 chr3 68422406 68422750 + 2 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) -78059 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 321-33 chr1 214807022 214807197 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -198433 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 483-153 chr22 31029239 31029551 + 2 NA Intergenic L1MDa|LINE|L1 -51923 NM_006932 6525 Hs.149098 NM_006932 ENSG00000183963 SMTN - smoothelin protein-coding 368-388 chr6 21929350 21929616 + 2 NA intron (NR_015410, intron 5 of 11) intron (NR_015410, intron 5 of 11) 217710 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 813-21 chr2 111221941 111222454 + 2 NA intron (NR_015395, intron 5 of 6) intron (NR_015395, intron 5 of 6) 98889 NR_039636 100616341 NR_039636 ENSG00000266139 MIR4435-2 mir-4435-2 microRNA 4435-2 ncRNA 348-67 chr10 110505101 110505358 + 2 NA intron (NM_004419, intron 2 of 3) MIRb|SINE|MIR 7322 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 222-220 chr21 30230088 30230268 + 2 NA Intergenic LTR67B|LTR|ERVL -14081 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 211-2 chr1 30047436 30047591 + 2 NA Intergenic Intergenic -9901 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 614-94 chr5 16295094 16295546 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 115079 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 403-221 chr4 64247544 64247803 + 2 NA Intergenic Intergenic 161777 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 385-156 chr19 36954347 36954690 + 2 NA intron (NM_001204839, intron 5 of 8) intron (NM_001204839, intron 5 of 8) 38186 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 792-56 chr7 9446364 9446910 + 2 NA Intergenic Arthur1C|DNA|hAT-Tip100 -187633 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 330-260 chr2 56642698 56643003 + 2 NA Intergenic Intergenic -457080 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 207 chr1 11506403 11506525 + 2 NA intron (NM_020780, intron 3 of 20) L1MEg|LINE|L1 27309 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 288-15 chr1 92068405 92068568 + 2 NA Intergenic Intergenic 6986 NM_001287737 646817 NM_001287737 ENSG00000230667 SETSIP SETP18 SET like protein protein-coding 303-80 chr11 122050494 122050778 + 2 NA intron (NR_137178, intron 3 of 4) intron (NR_137178, intron 3 of 4) 49208 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 330-36 chr1 187615435 187615685 + 2 NA Intergenic Intergenic 171932 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 221-211 chr4 37451824 37452005 + 2 NA Intergenic Intergenic -2011 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 254-106 chr14 33228716 33228868 + 2 NA intron (NM_173159, intron 3 of 11) L2a|LINE|L2 289913 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 464-114 chr2 36060338 36060685 + 2 NA Intergenic Intergenic 295059 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 351-321 chr3 177760088 177760284 + 2 NA Intergenic Intergenic -56679 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 851-21 chr2 106525145 106525700 + 2 NA intron (NM_001368307, intron 5 of 5) intron (NM_001368307, intron 5 of 5) 38058 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 314-163 chr14 41372824 41373075 + 2 NA Intergenic L1M5|LINE|L1 -233907 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 564-78 chr17 73526678 73527091 + 2 NA intron (NM_001144952, intron 1 of 44) L3|LINE|CR1 13201 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 567-179 chr8 69337928 69338329 + 2 NA Intergenic Intergenic 110116 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 352-30 chr1 226494690 226494996 + 2 NA Intergenic AluSg|SINE|Alu -53921 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 343-234 chr2 44682658 44682853 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 256133 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 267-193 chr2 100429596 100429791 + 2 NA Intergenic L1MB8|LINE|L1 -12025 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 315-155 chr15 81978430 81978636 + 2 NA Intergenic L2a|LINE|L2 67485 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 404-139 chr18 13324937 13325172 + 2 NA intron (NM_181482, intron 2 of 5) MER4CL34|LTR|ERV1 46949 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 254-148 chr17 7210350 7210555 + 2 NA intron (NM_001365, intron 3 of 21) intron (NM_001365, intron 3 of 21) -3181 NM_001369566 1742 Hs.463928 NM_001365 ENSG00000132535 DLG4 PSD95|SAP-90|SAP90 discs large MAGUK scaffold protein 4 protein-coding 345-44 chr10 4824554 4824888 + 2 NA Intergenic L1MC|LINE|L1 -1456 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 197-169 chr5 66792164 66792348 + 2 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -36517 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 216-212 chr3 32468423 32468560 + 2 NA Intergenic L1ME5|LINE|L1 34361 NM_017801 54918 Hs.380627 NM_017801 ENSG00000091317 CMTM6 CKLFSF6|PRO2219 CKLF like MARVEL transmembrane domain containing 6 protein-coding 523-261 chr8 51550235 51550682 + 2 NA intron (NM_144651, intron 4 of 22) L1PB1|LINE|L1 258987 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 263-382 chr7 14205330 14205498 + 2 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -213989 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 718-32 chr17 69972209 69972824 + 2 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 10809 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 153-94 chr7 98883897 98884037 + 2 NA intron (NM_003496, intron 3 of 70) intron (NM_003496, intron 3 of 70) 2270 NR_132754 106633801 NR_132754 SCARNA28 ZL1 small Cajal body-specific RNA 28 ncRNA 550-213 chr7 39545501 39545952 + 2 NA Intergenic Intergenic -20678 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 325-395 chr4 66246689 66246871 + 2 NA Intergenic L1PB4|LINE|L1 -30044 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 282-115 chr13 67556180 67556408 + 2 NA Intergenic Intergenic 183907 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 249-207 chr2 106874420 106874596 + 2 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 11520 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 230-367 chr8 48532308 48532485 + 2 NA Intergenic L1MD2|LINE|L1 -19171 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 326-288 chr20 3084281 3084481 + 2 NA intron (NM_000490, intron 1 of 2) intron (NM_000490, intron 1 of 2) 343 NM_000490 551 Hs.89648 NM_000490 ENSG00000101200 AVP ADH|ARVP|AVP-NPII|AVRP|VP arginine vasopressin protein-coding 619-102 chr5 41652704 41653097 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -142299 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 393-238 chr4 41722960 41723289 + 2 NA Intergenic AluSg7|SINE|Alu 25846 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 513-254 chr6 161556807 161557230 + 2 NA intron (NM_004562, intron 8 of 11) intron (NM_004562, intron 8 of 11) 86041 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 550-58 chr12 68530520 68530927 + 2 NA Intergenic Intergenic -79239 NR_120458 100507195 Hs.450772 NR_120458 ENSG00000251301 LINC02384 - long intergenic non-protein coding RNA 2384 ncRNA 402-286 chr5 135979494 135979885 + 2 NA Intergenic Intergenic -24706 NM_002302 3950 Hs.512580 NM_002302 ENSG00000145826 LECT2 chm-II|chm2 leukocyte cell derived chemotaxin 2 protein-coding 381-359 chr7 72163820 72164045 + 2 NA intron (NM_001363460, intron 2 of 5) L1M4a1|LINE|L1 173459 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 362-95 chr11 86982897 86983214 + 2 NA intron (NR_038905, intron 2 of 2) intron (NR_038905, intron 2 of 2) 27434 NR_038905 100506368 Hs.559920 NR_038905 ENSG00000246523 FZD4-DT - FZD4 divergent transcript ncRNA 389-378 chr9 25139394 25139779 + 2 NA Intergenic L1MA5|LINE|L1 539272 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 478-237 chr5 56752541 56752847 + 2 NA Intergenic MLT2B4|LTR|ERVL 20177 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 422-219 chr4 107394409 107394762 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 325649 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 470-43 chr11 116973499 116973824 + 2 NA intron (NM_001366687, intron 1 of 4) L1MC3|LINE|L1 124767 NM_001366686 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 475-127 chr2 52648153 52648551 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 54263 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 440-46 chr12 37856774 37857105 + 2 NA Intergenic ALR/Alpha|Satellite|centr -459835 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 300-179 chr2 6765234 6765439 + 2 NA intron (NR_038369, intron 1 of 5) intron (NR_038369, intron 1 of 5) 4975 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 165-64 chr20 1470002 1470109 + 2 NA Intergenic L1ME3Cz|LINE|L1 -2363 NR_038164 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 274-201 chr2 50407967 50408206 + 2 NA intron (NM_001330093, intron 17 of 22) L2c|LINE|L2 -60330 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 386-319 chr7 5740434 5740777 + 2 NA intron (NM_207111, intron 4 of 16) MER3|DNA|hAT-Charlie -28695 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 396-284 chr5 84454785 84455029 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -70027 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 203-67 chr14 83574137 83574277 + 2 NA Intergenic Intergenic 931575 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 114-50 chr5 50540802 50540886 + 2 NA Intergenic Intergenic -99556 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 546-127 chr20 43081735 43082186 + 2 NA intron (NM_133170, intron 1 of 31) L1MEi|LINE|L1 107946 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 351-301 chr3 68706781 68707036 + 2 NA Intergenic Intergenic 206271 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 125-66 chr7 64583422 64583497 + 2 NA non-coding (NR_033245, exon 1 of 1) non-coding (NR_033245, exon 1 of 1) 849 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 212-151 chr2 60123971 60124160 + 2 NA Intergenic Intergenic 258971 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 545-204 chr6 79851779 79852203 + 2 NA Intergenic L1MA2|LINE|L1 -39745 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 363-159 chr16 5609475 5609818 + 2 NA intron (NR_110902, intron 2 of 2) intron (NR_110902, intron 2 of 2) 6604 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 261-386 chr8 117403066 117403259 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -117551 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 334-174 chr15 61616632 61616905 + 2 NA Intergenic L1MB1|LINE|L1 -113150 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 298-510 chrX 45724083 45724274 + 2 NA Intergenic L1MB1|LINE|L1 -6910 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 524-168 chr4 45850205 45850643 + 2 NA Intergenic L1PB1|LINE|L1 273630 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 399-81 chr14 33597626 33597870 + 2 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -111189 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 263-58 chr10 83344845 83345089 + 2 NA Intergenic Intergenic 332122 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 193-51 chr13 79801013 79801196 + 2 NA Intergenic MIR|SINE|MIR -3282 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 384-233 chr3 101219179 101219508 + 2 NA Intergenic LTR28C|LTR|ERV1 101232 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 586-46 chr13 92802731 92803141 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -81322 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 310-289 chr20 39336419 39336679 + 2 NA Intergenic Intergenic -111801 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 308-38 chr1 209412551 209412753 + 2 NA Intergenic L2|LINE|L2 -16168 NR_145437 642587 Hs.510543 NR_145433 ENSG00000230937 MIR205HG LINC00510|NPC-A-5 MIR205 host gene ncRNA 307-106 chr12 63181135 63181426 + 2 NA Intergenic Intergenic -28470 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 322-53 chr10 23570213 23570515 + 2 NA Intergenic Intergenic -124363 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 330-281 chr2 108240976 108241170 + 2 NA intron (NM_001008743, intron 1 of 7) HUERS-P3b-int|LTR|ERV1 1105 NM_001008743 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 248-23 chr1 210430495 210430686 + 2 NA intron (NM_001122834, intron 7 of 11) L1MC5a|LINE|L1 101224 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 436-300 chr8 71572077 71572380 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -24134 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 251-217 chr22 22808474 22808705 + 2 NA Intergenic L1M4|LINE|L1 -14187 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 271-70 chr11 41829003 41829166 + 2 NA intron (NR_120584, intron 4 of 5) MLT1K|LTR|ERVL-MaLR 114516 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 297-66 chr11 25467307 25467530 + 2 NA Intergenic L1MD2|LINE|L1 -721705 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 530-171 chr3 119612825 119613185 + 2 NA intron (NM_015900, intron 4 of 10) intron (NM_015900, intron 4 of 10) 12734 NM_001293225 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 335-106 chr11 109840644 109840947 + 2 NA Intergenic L1ME1|LINE|L1 -252597 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 383-155 chr17 42278236 42278564 + 2 NA Intergenic Intergenic -1994 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 225-167 chr2 143621311 143621532 + 2 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -315646 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 270-157 chr17 67129881 67130047 + 2 NA intron (NM_001330447, intron 23 of 32) intron (NM_001330447, intron 23 of 32) 85410 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 508-4 chr1 55051658 55052091 + 2 NA intron (NM_174936, intron 3 of 11) intron (NM_174936, intron 3 of 11) 11652 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 333-32 chr1 165194487 165194726 + 2 NA Intergenic Intergenic 161635 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 300-250 chr21 14538532 14538713 + 2 NA intron (NM_001286523, intron 1 of 8) intron (NM_001286523, intron 1 of 8) 7693 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 240-70 chr11 2353295 2353455 + 2 NA intron (NR_108080, intron 1 of 2) MLT1A1|LTR|ERVL-MaLR -22802 NM_001297649 975 Hs.54457 NM_004356 ENSG00000110651 CD81 CVID6|S5.7|TAPA1|TSPAN28 CD81 molecule protein-coding 269-332 chr6 2815157 2815323 + 2 NA Intergenic L1ME1|LINE|L1 26623 NR_073112 1992 Hs.381167 NM_030666 ENSG00000021355 SERPINB1 EI|ELANH2|HEL-S-27|HEL57|LEI|M/NEI|MNEI|PI-2|PI2 serpin family B member 1 protein-coding 188-14 chr10 14484566 14484711 + 2 NA Intergenic MER65C|LTR|ERV1 48062 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 188-32 chr12 652336 652472 + 2 NA intron (NM_016533, intron 1 of 3) L1MC1|LINE|L1 -8768 NM_001367996 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 273-426 chr7 63971638 63971820 + 2 NA Intergenic L1MB2|LINE|L1 -27077 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 530-93 chr16 77024502 77024843 + 2 NA Intergenic Intergenic 155736 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 225-101 chr15 60277572 60277734 + 2 NA Intergenic L1ME3Cz|LINE|L1 120333 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 181-65 chr2 75759879 75759991 + 2 NA Intergenic L1ME4a|LINE|L1 -49020 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 219-101 chr14 62430815 62431019 + 2 NA Intergenic Intergenic -290944 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 273-224 chr2 81933908 81934066 + 2 NA Intergenic Intergenic -467041 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 259-291 chr4 92389000 92389224 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 84713 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 281-186 chr19 40047495 40047744 + 2 NA intron (NM_001005851, intron 3 of 4) intron (NM_001005851, intron 3 of 4) 8612 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 189-174 chr6 34013330 34013471 + 2 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -13349 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 555-110 chr20 15315299 15315604 + 2 NA intron (NM_001351663, intron 6 of 17) L1M4|LINE|L1 118611 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 131-15 chr11 41086237 41086330 + 2 NA intron (NM_001258419, intron 1 of 6) Charlie19a|DNA|hAT-Charlie 373353 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 255-225 chr2 212782452 212782669 + 2 NA Intergenic L1MA10|LINE|L1 -12771 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 214-341 chr8 133841089 133841243 + 2 NA Intergenic L1ME3E|LINE|L1 -45330 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 435-247 chr8 106822970 106823347 + 2 NA Intergenic Intergenic -52914 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 314-126 chr12 41820321 41820548 + 2 NA Intergenic Intergenic 56245 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 261-128 chr16 61854921 61855080 + 2 NA intron (NM_001796, intron 4 of 11) intron (NM_001796, intron 4 of 11) 181438 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 596-168 chr8 115540885 115541405 + 2 NA intron (NM_001282902, intron 4 of 5) Tigger13a|DNA|TcMar-Tigger 126868 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 116-7 chr11 58461889 58461955 + 2 NA Intergenic L1M5|LINE|L1 -21749 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 559-74 chr17 61086506 61086877 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 281013 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 192-153 chr4 143594437 143594570 + 2 NA intron (NM_001168235, intron 6 of 7) intron (NM_001168235, intron 6 of 7) 35031 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 GUSB pseudogene 5 pseudo 254-260 chr3 182028918 182029126 + 2 NA Intergenic Intergenic 76658 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 356-41 chr10 11019044 11019340 + 2 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 436 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 317-289 chr22 38834869 38835051 + 2 NA intron (NM_014293, intron 1 of 4) MIR|SINE|MIR 9068 NM_014293 23467 Hs.91622 NM_014293 ENSG00000221890 NPTXR NPR neuronal pentraxin receptor protein-coding 489-12 chr1 172923238 172923563 + 2 NA Intergenic Intergenic 127563 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 305-410 chr4 165595321 165595523 + 2 NA Intergenic L2a|LINE|L2 -89217 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 757-22 chr17 65912104 65912783 + 2 NA intron (NM_001353129, intron 19 of 26) ERVL-B4-int|LTR|ERVL -85900 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 322-524 chr8 79435001 79435225 + 2 NA Intergenic L2|LINE|L2 102925 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 321-176 chr14 71776411 71776650 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -155641 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 175-134 chr5 104019969 104020124 + 2 NA Intergenic Intergenic -457257 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 337-416 chr4 161118709 161119012 + 2 NA Intergenic L1MB1|LINE|L1 -903873 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 430-132 chr19 29107862 29108108 + 2 NA Intergenic Intergenic 105166 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 306-93 chr11 113870455 113870678 + 2 NA intron (NM_020886, intron 1 of 24) intron (NM_020886, intron 1 of 24) 5006 NM_001346270 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 550-218 chr7 71923371 71923863 + 2 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 413774 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 504-70 chr14 55828838 55829180 + 2 NA Intergenic MIR3|SINE|MIR -32335 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 776-2 chr1 19536591 19537119 + 2 NA Intergenic AluSx|SINE|Alu -51316 NM_004930 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 395-223 chr3 103523449 103523748 + 2 NA TTS (NR_039611) TTS (NR_039611) 518 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 533-191 chr5 153023484 153023861 + 2 NA Intergenic L1M1|LINE|L1 -51323 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 303-137 chr14 87828793 87828985 + 2 NA Intergenic L1MD1|LINE|L1 164293 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 326-153 chr14 69995200 69995434 + 2 NA intron (NM_001034852, intron 7 of 11) intron (NM_001034852, intron 7 of 11) 17184 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 443-295 chr8 127259673 127260015 + 2 NA intron (NR_117099, intron 1 of 3) MIR|SINE|MIR 15207 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 514-206 chr4 100725443 100725895 + 2 NA Intergenic L1MEf|LINE|L1 -50556 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 387-75 chr12 17212351 17212690 + 2 NA Intergenic Intergenic 223773 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 330-524 chr8 103168561 103168790 + 2 NA intron (NR_109954, intron 1 of 2) HAL1|LINE|L1 3465 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 328-351 chr3 68514037 68514277 + 2 NA intron (NM_001252216, intron 3 of 4) MLT1A0|LTR|ERVL-MaLR 13520 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 304-453 chr6 21274949 21275211 + 2 NA Intergenic Intergenic 236812 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 138-85 chr7 79726198 79726329 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 272303 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 540-204 chr8 21401368 21401783 + 2 NA Intergenic L1ME3E|LINE|L1 103336 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 325-28 chr1 169748433 169748597 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -14436 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 375-348 chr6 18131659 18131942 + 2 NA intron (NM_001346818, intron 7 of 7) AluSx|SINE|Alu -9123 NM_198586 378884 Hs.348351 NM_198586 ENSG00000187566 NHLRC1 EPM2A|EPM2B|MALIN|bA204B7.2 NHL repeat containing E3 ubiquitin protein ligase 1 protein-coding 474-67 chr12 90275330 90275609 + 2 NA Intergenic MLT2B4|LTR|ERVL -17849 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 265-416 chr9 106871256 106871508 + 2 NA intron (NM_001347997, intron 1 of 12) intron (NM_001347997, intron 1 of 12) 8216 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 251-54 chr11 90903298 90903498 + 2 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -34196 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 301-45 chr10 82637689 82637893 + 2 NA intron (NR_163253, intron 3 of 10) L1MC4|LINE|L1 -404871 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 301-222 chr2 123901345 123901536 + 2 NA Intergenic L1M2|LINE|L1 123734 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 285-273 chr3 89159890 89160121 + 2 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 52384 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 230-140 chr16 76660163 76660383 + 2 NA Intergenic L1MA4A|LINE|L1 25275 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 694-55 chr18 13721140 13721758 + 2 NA intron (NM_001098801, intron 1 of 4) ERVL-E-int|LTR|ERVL 5109 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 411-307 chr9 73498058 73498432 + 2 NA Intergenic Intergenic 346380 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 438-55 chr11 55618449 55618767 + 2 NA Intergenic L1PA15|LINE|L1 -14210 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 404-67 chr11 97468843 97469211 + 2 NA Intergenic Intergenic 960602 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 305-505 chr7 45993433 45993688 + 2 NA Intergenic Intergenic -72288 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 308-157 chr15 46524647 46524897 + 2 NA Intergenic Intergenic -659317 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 204-101 chr15 62340625 62340776 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -2329 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 553-31 chr11 47895764 47896290 + 2 NA Intergenic AluSx|SINE|Alu -47483 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 399-176 chr2 225850802 225851173 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -291807 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 295-400 chr6 40248415 40248582 + 2 NA Intergenic Intergenic 107508 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 143-11 chr11 21238789 21238914 + 2 NA intron (NM_201551, intron 14 of 18) MIR|SINE|MIR 569265 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 307-508 chr9 19699328 19699589 + 2 NA intron (NM_020344, intron 1 of 9) L1ME4a|LINE|L1 87561 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 382-59 chr11 38371227 38371606 + 2 NA Intergenic L1MB1|LINE|L1 274940 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 318-112 chr11 97047468 97047671 + 2 NA Intergenic L1MC4|LINE|L1 539144 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 508-253 chr9 11933299 11933755 + 2 NA Intergenic L1PA15|LINE|L1 -759858 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 373-112 chr14 59716131 59716451 + 2 NA intron (NM_021136, intron 3 of 8) MIRb|SINE|MIR -69271 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 400-328 chr7 122485616 122485823 + 2 NA intron (NM_001167940, intron 11 of 29) Tigger1|DNA|TcMar-Tigger -180969 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 236-389 chr9 113033057 113033250 + 2 NA Intergenic Intergenic -20961 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 259-363 chr7 5588426 5588584 + 2 NA Intergenic Intergenic -4311 NM_003088 6624 Hs.118400 NM_003088 ENSG00000075618 FSCN1 FAN1|HSN|SNL|p55 fascin actin-bundling protein 1 protein-coding 471-143 chr2 228776648 228776942 + 2 NA Intergenic Intergenic -165400 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 237-285 chr5 18695542 18695730 + 2 NA Intergenic Intergenic 888362 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 190-80 chr19 43844244 43844401 + 2 NA intron (NM_181845, intron 6 of 6) intron (NM_181845, intron 6 of 6) 17001 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 339-614 chr9 118748910 118749236 + 2 NA Intergenic L1M3c|LINE|L1 69402 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 374-351 chr6 166770983 166771280 + 2 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 91394 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 181-71 chr2 124416603 124416727 + 2 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 391378 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 603-52 chr14 68605241 68605742 + 2 NA intron (NM_001321809, intron 11 of 11) LTR10E|LTR|ERV1 23296 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 215 chr1 21793984 21794154 + 2 NA Intergenic AluSc8|SINE|Alu -10870 NM_001330394 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 234-176 chr2 83739516 83739699 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 216793 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 287-166 chr17 82228223 82228482 + 2 NA promoter-TSS (NM_004207) promoter-TSS (NM_004207) -54 NM_001042422 9123 Hs.500761 NM_004207 ENSG00000141526 SLC16A3 MCT 3|MCT 4|MCT-3|MCT-4|MCT3|MCT4 solute carrier family 16 member 3 protein-coding 355-86 chr11 33743803 33744033 + 2 NA 3' UTR (NM_033406, exon 10 of 10) 3' UTR (NM_033406, exon 10 of 10) -7439 NM_203329 966 Hs.278573 NM_000611 ENSG00000085063 CD59 16.3A5|1F5|EJ16|EJ30|EL32|G344|HRF-20|HRF20|MAC-IP|MACIF|MEM43|MIC11|MIN1|MIN2|MIN3|MIRL|MSK21|p18-20 CD59 molecule (CD59 blood group) protein-coding 493-203 chr3 83900407 83900760 + 2 NA Intergenic L1MA5|LINE|L1 968992 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 289-110 chr12 66138667 66138908 + 2 NA intron (NM_016056, intron 5 of 6) intron (NM_016056, intron 5 of 6) 8036 NR_125724 103625681 Hs.504820 NR_125724 ENSG00000239335 LLPH-DT LLPH-AS1 LLPH divergent transcript ncRNA 436-282 chr7 35787752 35788109 + 2 NA intron (NR_120511, intron 2 of 5) intron (NR_120511, intron 2 of 5) 12695 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 296-322 chr4 440367 440643 + 2 NA 3' UTR (NM_133474, exon 3 of 3) 3' UTR (NM_133474, exon 3 of 3) 33704 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 326-418 chr5 85007484 85007731 + 2 NA Intergenic L1PB1|LINE|L1 -622727 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 454-344 chr9 102332518 102332911 + 2 NA Intergenic L1P4|LINE|L1 -186923 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 341-260 chr2 107618127 107618359 + 2 NA Intergenic PABL_A-int|LTR|ERV1 88824 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 145-76 chr7 37482331 37482467 + 2 NA Intergenic Intergenic -33073 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 211-63 chr12 54894113 54894287 + 2 NA Intergenic Intergenic 39684 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 291-208 chr2 34131178 34131420 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 64073 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 494-236 chr5 121395855 121396261 + 2 NA Intergenic L1ME1|LINE|L1 73508 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 236-215 chr3 31112507 31112717 + 2 NA Intergenic Intergenic 49175 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 319-53 chr10 43508092 43508339 + 2 NA Intergenic HERVL74-int|LTR|ERVL 60244 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 275-373 chr8 137473198 137473431 + 2 NA Intergenic Intergenic -59726 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 351-233 chr2 124747818 124748018 + 2 NA intron (NM_130773, intron 14 of 23) AluSc|SINE|Alu 722631 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 209-222 chr4 52050261 52050444 + 2 NA promoter-TSS (NM_001297608) promoter-TSS (NM_001297608) -952 NM_001346102 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 323-345 chr3 144674599 144674842 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 701639 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 475-56 chr12 19601965 19602384 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 161575 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 358-453 chr7 113551742 113551963 + 2 NA Intergenic Intergenic 367157 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 427-30 chr10 106217124 106217352 + 2 NA Intergenic Intergenic 77073 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 300-391 chr6 64320266 64320475 + 2 NA intron (NM_001292009, intron 29 of 43) L1M4a1|LINE|L1 513534 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 380-350 chr6 153960548 153960839 + 2 NA Intergenic MamRep1879|DNA|hAT-Tip100? -49803 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 301-271 chr22 47264903 47265071 + 2 NA Intergenic L1ME3G|LINE|L1 -80584 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 385-264 chr4 31924345 31924599 + 2 NA Intergenic MER72B|LTR|ERV1 -72907 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 374-131 chr16 75673113 75673409 + 2 NA Intergenic AluJb|SINE|Alu 25488 NM_018975 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 419-153 chr2 155865030 155865399 + 2 NA Intergenic Intergenic 389717 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 253-358 chr6 74976280 74976499 + 2 NA Intergenic Intergenic 152393 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 266-31 chr10 11348241 11348487 + 2 NA Intergenic MER66-int|LTR|ERV1 -3690 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 350-562 chrX 18088821 18089090 + 2 NA intron (NR_133641, intron 1 of 4) L1MB7|LINE|L1 15689 NR_133641 105373144 NR_133641 ENSG00000225882 LINC01456 - long intergenic non-protein coding RNA 1456 ncRNA 346-367 chr4 149220603 149220827 + 2 NA intron (NR_125887, intron 9 of 12) L1PA14|LINE|L1 66420 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 320-549 chr8 84394189 84394412 + 2 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -21184 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 120-9 chr10 83299297 83299370 + 2 NA Intergenic Intergenic 377756 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 369-179 chr19 52319159 52319448 + 2 NA intron (NM_144684, intron 4 of 4) L1MB2|LINE|L1 -16940 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 413-17 chr1 152330726 152330998 + 2 NA intron (NR_103778, intron 2 of 6) intron (NR_103778, intron 2 of 6) -5659 NM_002016 2312 Hs.654510 NM_002016 ENSG00000143631 FLG ATOD2 filaggrin protein-coding 163-84 chr3 90378621 90378742 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1271060 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 347-190 chr19 36401352 36401600 + 2 NA intron (NM_001321917, intron 4 of 4) L2a|LINE|L2 17168 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 380-132 chr15 27402910 27403175 + 2 NA intron (NM_001270873, intron 5 of 5) L1MEg|LINE|L1 -241723 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 272-246 chr21 22300614 22300787 + 2 NA Intergenic L1ME1|LINE|L1 202083 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 197-105 chr2 148526073 148526202 + 2 NA Intergenic Intergenic -118614 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 430-20 chr1 241657594 241657946 + 2 NA intron (NM_001367482, intron 1 of 27) intron (NM_001367482, intron 1 of 27) 5489 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 230-388 chr8 129310429 129310613 + 2 NA Intergenic L1MEc|LINE|L1 -69281 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 496-98 chr15 57849938 57850337 + 2 NA Intergenic Intergenic 143423 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 374-304 chr5 26263540 26263821 + 2 NA Intergenic L1PA16|LINE|L1 774906 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 272-344 chr5 51828918 51829137 + 2 NA Intergenic L2c|LINE|L2 -179004 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 325-98 chr11 32121836 32122106 + 2 NA Intergenic Intergenic 21941 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 274-310 chr5 63864150 63864303 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 98066 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 349-126 chr12 40501381 40501654 + 2 NA intron (NM_173600, intron 66 of 173) intron (NM_173600, intron 66 of 173) 108123 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 174-84 chr3 6426201 6426362 + 2 NA Intergenic LTR37B|LTR|ERV1 379168 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 343-399 chr4 105737369 105737686 + 2 NA intron (NM_001370181, intron 5 of 11) L1MA5|LINE|L1 26714 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 439-73 chr12 64351608 64351887 + 2 NA intron (NM_001099676, intron 2 of 10) MER61-int|LTR|ERV1 39011 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 347-322 chr3 132198903 132199107 + 2 NA Intergenic Intergenic -118402 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 308-530 chr8 144861816 144862097 + 2 NA Intergenic LTR46-int|LTR|ERV1 -8400 NM_001081003 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 287-269 chr3 177844515 177844712 + 2 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 27748 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 171-82 chr3 102844878 102844970 + 2 NA Intergenic Intergenic 409909 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 250-145 chr15 93647035 93647213 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -209436 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 554-42 chr11 25355008 25355513 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -833863 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 238-184 chr2 136950180 136950365 + 2 NA intron (NM_001316349, intron 2 of 27) AluSx4|SINE|Alu 184727 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 504-202 chr4 156329893 156330322 + 2 NA Intergenic Intergenic -376241 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 331-427 chr5 96034702 96034961 + 2 NA intron (NR_130776, intron 1 of 4) L1MA8|LINE|L1 -44307 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 277-207 chr2 125751422 125751626 + 2 NA Intergenic Intergenic 366461 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 340-290 chr2 166669318 166669567 + 2 NA Intergenic Intergenic -182471 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 165-141 chrX 64948383 64948512 + 2 NA intron (NM_001178032, intron 1 of 4) MER57-int|LTR|ERV1 28003 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 211-232 chr5 45424501 45424674 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 271793 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 376-242 chr3 44682603 44682849 + 2 NA intron (NR_157564, intron 1 of 2) Tigger3|DNA|TcMar-Tigger 2927 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 417-9 chr1 82742420 82742793 + 2 NA Intergenic Intergenic -160577 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 546-122 chr20 7192659 7193053 + 2 NA intron (NR_110609, intron 3 of 7) intron (NR_110609, intron 3 of 7) 61346 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 184-44 chr12 39976421 39976536 + 2 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 129603 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 294-438 chr7 62750274 62750451 + 2 NA Intergenic ALR/Alpha|Satellite|centr 553694 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 324-65 chr10 80367690 80367869 + 2 NA non-coding (NR_070308, exon 6 of 6) non-coding (NR_070308, exon 6 of 6) 10998 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 348-60 chr10 89405244 89405519 + 2 NA 3' UTR (NM_001270930, exon 3 of 3) 3' UTR (NM_001270930, exon 3 of 3) -9187 NM_012420 24138 Hs.252839 NM_012420 ENSG00000152778 IFIT5 ISG58|P58|RI58 interferon induced protein with tetratricopeptide repeats 5 protein-coding 931-20 chr4 57881005 57881592 + 2 NA Intergenic Intergenic 455426 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 360-97 chr12 104033460 104033809 + 2 NA intron (NM_031302, intron 2 of 11) L1MA9|LINE|L1 30543 NM_031302 83468 Hs.631650 NM_031302 ENSG00000120820 GLT8D2 - glycosyltransferase 8 domain containing 2 protein-coding 335-452 chr5 175297228 175297474 + 2 NA Intergenic L1PA15|LINE|L1 146831 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 214-335 chr8 118684311 118684497 + 2 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -62441 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 204-170 chr21 19507965 19508155 + 2 NA Intergenic L1MA4|LINE|L1 391695 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 319-113 chr12 114963580 114963780 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -279505 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 225-384 chr9 28044385 28044546 + 2 NA intron (NM_152570, intron 5 of 6) LTR81AB|LTR|Gypsy -470599 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 338-572 chr8 139801222 139801449 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -98212 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 983-6 chr15 76582625 76583264 + 2 NA intron (NR_148227, intron 22 of 32) L1MA3|LINE|L1 -3703 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 284-102 chr13 18959038 18959234 + 2 NA Intergenic Intergenic -49123 NR_026852 348021 Hs.314114 NR_026852 ENSG00000232685 LINC00442 - long intergenic non-protein coding RNA 442 ncRNA 322-438 chr5 111617389 111617701 + 2 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -104948 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 308-203 chr18 70945027 70945255 + 2 NA Intergenic L1M1|LINE|L1 -294187 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 208-65 chr12 123806329 123806451 + 2 NA intron (NM_207437, intron 17 of 77) MIR|SINE|MIR 43895 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 470-45 chr12 10463707 10464048 + 2 NA Intergenic L1PA14|LINE|L1 -9192 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 360-492 chr9 103996985 103997305 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -2564 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 218-337 chr8 135265163 135265323 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 31112 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 240-367 chr6 7971660 7971849 + 2 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) -14348 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 269-74 chr11 102434696 102434917 + 2 NA intron (NM_052932, intron 2 of 4) L1MA8|LINE|L1 17959 NM_052932 114908 Hs.503709 NM_052932 ENSG00000152558 TMEM123 KCT3|PORIMIN|PORMIN transmembrane protein 123 protein-coding 249-342 chr5 117816364 117816527 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 86084 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 297-255 chr20 9493888 9494102 + 2 NA Intergenic Intergenic -20363 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 527-270 chr8 122814620 122815096 + 2 NA intron (NM_001362797, intron 1 of 4) MIRb|SINE|MIR 33203 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 278-359 chr6 7949602 7949806 + 2 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) -36398 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 376-232 chr22 33235976 33236240 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 127579 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 466-229 chr6 101095430 101095805 + 2 NA Intergenic AluY|SINE|Alu -214245 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 498-267 chr8 55340859 55341290 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 114247 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 378-454 chr9 83761301 83761629 + 2 NA intron (NM_001135953, intron 7 of 11) L1MA2|LINE|L1 53134 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 259-357 chr6 141589680 141589889 + 2 NA Intergenic Intergenic 499015 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 340-32 chr1 226396543 226396735 + 2 NA intron (NM_001618, intron 2 of 22) intron (NM_001618, intron 2 of 22) 11454 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 283-308 chr4 398113 398346 + 2 NA Intergenic L1MA10|LINE|L1 48072 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 1325-3 chr2 116294724 116295743 + 2 NA Intergenic Intergenic 951418 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 266-395 chr7 41093717 41093872 + 2 NA Intergenic Intergenic -7810 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 277-431 chr8 126103628 126103818 + 2 NA Intergenic Intergenic -152526 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 512-133 chr2 129111820 129112157 + 2 NA Intergenic L1MA9|LINE|L1 161903 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 455-60 chr12 61548313 61548665 + 2 NA Intergenic Intergenic 644350 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 338-26 chr1 176318521 176318701 + 2 NA Intergenic Intergenic -111325 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 215-136 chr19 52481380 52481543 + 2 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 27908 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 545-249 chr8 134260375 134260817 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -337475 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 252-177 chr2 7162189 7162374 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -84401 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 271-313 chr4 70808573 70808780 + 2 NA TTS (NM_001291993) TTS (NM_001291993) 30827 NM_001098477 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 1222 chr1 176190113 176190836 + 2 NA intron (NM_022457, intron 1 of 19) intron (NM_022457, intron 1 of 19) 16770 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 249-49 chr10 51580493 51580726 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 118986 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 247-154 chr17 30051802 30052044 + 2 NA intron (NR_026738, intron 9 of 15) intron (NR_026738, intron 9 of 15) -64884 NM_001261467 84081 Hs.462663 NM_032141 ENSG00000126653 NSRP1 CCDC55|HSPC095|NSrp70 nuclear speckle splicing regulatory protein 1 protein-coding 371-380 chr8 79537069 79537325 + 2 NA Intergenic L1PA7|LINE|L1 -73920 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 287-303 chr5 18100811 18101056 + 2 NA Intergenic L2c|LINE|L2 293659 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 204-250 chr6 55638519 55638662 + 2 NA Intergenic MIRc|SINE|MIR -59376 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 345-398 chr4 174617333 174617531 + 2 NA Intergenic MIRb|SINE|MIR -94534 NM_001145816 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 198-29 chr10 112258797 112258928 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -24538 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 411-137 chr2 22525168 22525486 + 2 NA Intergenic (A)n|Simple_repeat|Simple_repeat -11152 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 284-398 chr8 34234406 34234648 + 2 NA Intergenic L1ME2|LINE|L1 -549394 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 166-85 chr4 67864176 67864330 + 2 NA intron (NM_004262, intron 1 of 9) intron (NM_004262, intron 1 of 9) 19749 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 518-118 chr19 34546978 34547345 + 2 NA Intergenic L1M5|LINE|L1 -1775 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 199-253 chr9 24604412 24604608 + 2 NA Intergenic Intergenic -58613 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 321-408 chr4 32885287 32885551 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 534381 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 241-414 chr8 137065167 137065398 + 2 NA Intergenic L1MB1|LINE|L1 348306 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 180-68 chr18 10206729 10206839 + 2 NA Intergenic Intergenic 207586 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 282-351 chr4 108767893 108768128 + 2 NA Intergenic AluSq|SINE|Alu -4957 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 306-28 chr1 119822707 119823007 + 2 NA Intergenic L1P3b|LINE|L1 -11397 NM_032044 83998 Hs.660883 NM_032044 ENSG00000134193 REG4 GISP|REG-IV|RELP regenerating family member 4 protein-coding 347-245 chr2 148582961 148583147 + 2 NA Intergenic Intergenic -61697 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 488-69 chr13 76788618 76789054 + 2 NA Intergenic Intergenic 97569 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 190-82 chr2 18675566 18675744 + 2 NA Intergenic L1PB3|LINE|L1 -86075 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 410-92 chr14 78038085 78038465 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -132098 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 252-68 chr11 40909494 40909667 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 550056 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 252-410 chr8 16420985 16421200 + 2 NA Intergenic Intergenic -228301 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 407-332 chr8 133157640 133158014 + 2 NA Intergenic LTR16C|LTR|ERVL -33212 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 318-12 chr1 54770098 54770282 + 2 NA Intergenic Intergenic -5667 NM_152268 25973 Hs.380169 NM_152268 ENSG00000162396 PARS2 EIEE75|MT-PRORS|proRS prolyl-tRNA synthetase 2, mitochondrial protein-coding 487-263 chr7 15873806 15874252 + 2 NA Intergenic Intergenic 185651 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 687-49 chr17 12798828 12799358 + 2 NA intron (NM_001321164, intron 1 of 20) intron (NM_001321164, intron 1 of 20) -8809 NR_104607 100128006 Hs.567641 NR_104607 ENSG00000265489 LOC100128006 - uncharacterized LOC100128006 ncRNA 671-95 chr7 97461819 97462195 + 2 NA Intergenic LTR8B|LTR|ERV1 -270079 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 582-90 chr21 7942299 7942795 + 2 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -112915 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 293-59 chr11 50626604 50626802 + 2 NA Intergenic ALR/Alpha|Satellite|centr 217556 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 328-208 chr17 53744794 53745114 + 2 NA Intergenic LTR84a|LTR|ERVL -77973 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 235-92 chr13 79814470 79814626 + 2 NA Intergenic L1MB8|LINE|L1 10162 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 250-308 chr4 64393547 64393722 + 2 NA intron (NM_001363796, intron 1 of 11) intron (NM_001363796, intron 1 of 11) 15816 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 302-221 chr2 119102321 119102590 + 2 NA Intergenic L1M3|LINE|L1 56296 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 217-109 chr14 28364055 28364241 + 2 NA Intergenic Intergenic 401171 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 578-165 chr7 140127236 140127718 + 2 NA exon (NM_030647, exon 5 of 20) exon (NM_030647, exon 5 of 20) 49506 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 573-142 chr5 27263655 27264136 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -208397 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 242-213 chr20 19430458 19430668 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -145967 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 173-83 chr21 25008858 25008991 + 2 NA intron (NR_046198, intron 2 of 3) Tigger3b|DNA|TcMar-Tigger 168374 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 224-316 chr8 57921100 57921316 + 2 NA Intergenic L1MCc|LINE|L1 -57150 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 277-315 chr5 40924142 40924376 + 2 NA intron (NM_000587, intron 1 of 17) MSTA-int|LTR|ERVL-MaLR 14762 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 531-37 chr11 80964603 80964986 + 2 NA Intergenic Intergenic -201991 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 642-99 chr5 178924453 178924847 + 2 NA intron (NM_030613, intron 4 of 4) AluSq2|SINE|Alu -16548 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 320-559 chr8 104934429 104934603 + 2 NA Intergenic Intergenic -345492 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 276-421 chr7 245508 245669 + 2 NA intron (NM_020223, intron 3 of 9) intron (NM_020223, intron 3 of 9) 53017 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 581-48 chr15 37515907 37516357 + 2 NA Intergenic Intergenic -414821 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 311-561 chrX 87559734 87559933 + 2 NA intron (NM_057162, intron 1 of 10) L2c|LINE|L2 42031 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 166-30 chr14 79864575 79864683 + 2 NA non-coding (NR_158973, exon 23 of 23) non-coding (NR_158973, exon 23 of 23) -346790 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 493-279 chr7 68373413 68373804 + 2 NA Intergenic L1PB1|LINE|L1 353355 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 348-393 chr5 16360402 16360680 + 2 NA Intergenic Intergenic 80561 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 717-22 chr11 124291098 124291574 + 2 NA Intergenic L1PA15|LINE|L1 19430 NM_001002917 283159 Hs.504211 NM_001002917 ENSG00000196341 OR8D1 JCG9|OR8D3|OST004|PDJ9J14 olfactory receptor family 8 subfamily D member 1 protein-coding 223-176 chr2 218197943 218198115 + 2 NA Intergenic Intergenic -19160 NM_152862 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 224-108 chr16 64927800 64927978 + 2 NA Intergenic L1PA16|LINE|L1 194174 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 286-196 chr2 34833089 34833280 + 2 NA Intergenic Intergenic 155627 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 360-117 chr14 53137854 53138062 + 2 NA intron (NM_030637, intron 1 of 11) L1MEc|LINE|L1 15365 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 560-4 chr1 86492437 86492884 + 2 NA intron (NM_001285, intron 9 of 13) intron (NM_001285, intron 9 of 13) 23733 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 296-143 chr14 65219099 65219258 + 2 NA intron (NR_103769, intron 1 of 3) intron (NR_103769, intron 1 of 3) 3169 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 284-462 chrX 108909325 108909506 + 2 NA Intergenic L1P1|LINE|L1 172875 NR_110652 101928358 Hs.722300 NR_110652 ENSG00000237863 LOC101928358 - uncharacterized LOC101928358 ncRNA 339-485 chr5 180107351 180107549 + 2 NA intron (NM_175062, intron 12 of 13) L1MDa|LINE|L1 -35691 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 376-277 chr4 57223454 57223680 + 2 NA Intergenic L1PB3|LINE|L1 -113182 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 237-2 chr1 5132220 5132396 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 477699 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 253-330 chr5 74173053 74173298 + 2 NA Intergenic LTR85c|LTR|Gypsy? 135150 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 259-359 chr6 152833590 152833772 + 2 NA Intergenic AluJb|SINE|Alu 82884 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 264-309 chr5 14215364 14215560 + 2 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 72120 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 450-113 chr17 52659114 52659406 + 2 NA Intergenic Intergenic -202861 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 458-52 chr12 113741147 113741583 + 2 NA Intergenic MIRb|SINE|MIR 32318 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 470-46 chr12 18579233 18579605 + 2 NA intron (NM_001288774, intron 29 of 32) intron (NM_001288774, intron 29 of 32) 158090 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 530-25 chr10 26055040 26055550 + 2 NA intron (NM_017433, intron 10 of 34) L1MCa|LINE|L1 121066 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 490-79 chr13 69543337 69543670 + 2 NA Intergenic Intergenic 321157 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 444-36 chr11 33439109 33439426 + 2 NA intron (NM_012194, intron 1 of 20) L1MA4A|LINE|L1 63159 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 203-157 chr3 182054517 182054697 + 2 NA Intergenic L1MC3|LINE|L1 102243 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 208-225 chr5 179001865 179001991 + 2 NA Intergenic L1ME3B|LINE|L1 -6608 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 257-443 chr9 118908018 118908270 + 2 NA Intergenic MIRb|SINE|MIR 228473 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 209-64 chr11 130062262 130062422 + 2 NA Intergenic Intergenic -7552 NM_001328686 334 Hs.370247 NM_001642 ENSG00000084234 APLP2 APLP-2|APPH|APPL2|CDEBP amyloid beta precursor like protein 2 protein-coding 226-295 chr6 9476304 9476475 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 824180 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 329-320 chr2 241555611 241555895 + 2 NA intron (NR_033346, intron 1 of 1) intron (NR_033346, intron 1 of 1) -2992 NM_032515 666 Hs.293753 NM_032515 ENSG00000176720 BOK BCL2L9|BOKL BCL2 family apoptosis regulator BOK protein-coding 431-159 chr2 237490809 237491085 + 2 NA intron (NM_024101, intron 1 of 15) intron (NM_024101, intron 1 of 15) 3696 NM_024101 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 785-24 chr18 9760798 9761349 + 2 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 52772 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 304-102 chr12 19071142 19071411 + 2 NA Intergenic Intergenic -58457 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 478-154 chr2 194284905 194285278 + 2 NA Intergenic L1P4|LINE|L1 -59178 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 427-253 chr8 54352896 54353293 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 22408 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 351-39 chr10 43246677 43246952 + 2 NA intron (NM_145313, intron 1 of 12) L1MB7|LINE|L1 -17075 NM_001282862 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 352-470 chr6 140779023 140779253 + 2 NA Intergenic L1MEg|LINE|L1 95324 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 119-62 chr9 70314536 70314616 + 2 NA intron (NM_015110, intron 11 of 24) L1MC5|LINE|L1 55598 NM_015110 23137 Hs.534189 NM_015110 ENSG00000198887 SMC5 SMC5L1 structural maintenance of chromosomes 5 protein-coding 350-145 chr14 86104531 86104808 + 2 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 169991 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 327-530 chr9 104314165 104314368 + 2 NA Intergenic Intergenic 44037 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 240-363 chr5 155479813 155479971 + 2 NA Intergenic L2c|LINE|L2 466137 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 222-384 chr8 141826153 141826303 + 2 NA Intergenic HAL1|LINE|L1 -39915 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 326-453 chr6 54790409 54790699 + 2 NA Intergenic L2c|LINE|L2 -56217 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 210-252 chr6 116468685 116468856 + 2 NA Intergenic L1ME3B|LINE|L1 7395 NM_001276460 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 289-368 chr5 52653791 52654036 + 2 NA Intergenic Intergenic -134003 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 261-24 chr1 179713765 179713974 + 2 NA Intergenic L1M1|LINE|L1 -13907 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 263-420 chr8 91354673 91354857 + 2 NA intron (NM_134266, intron 11 of 18) intron (NM_134266, intron 11 of 18) 105446 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 245-266 chr4 154681396 154681594 + 2 NA Intergenic AluY|SINE|Alu -59346 NM_001301645 9227 Hs.658427 NM_004744 ENSG00000121207 LRAT LCA14 lecithin retinol acyltransferase protein-coding 347-360 chr4 164413535 164413721 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -30373 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 140-66 chr6 164753457 164753550 + 2 NA Intergenic LTR8B|LTR|ERV1 68560 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 246-221 chr2 212205476 212205630 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 220807 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 416-233 chr3 153119316 153119544 + 2 NA Intergenic AluSz|SINE|Alu -42796 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 219-296 chr5 128109101 128109281 + 2 NA intron (NM_001046, intron 1 of 26) intron (NM_001046, intron 1 of 26) 25425 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 535-20 chr1 203689668 203690139 + 2 NA intron (NM_001001396, intron 2 of 21) L2c|LINE|L2 -39678 NR_003019 677843 Hs.676135 NR_003019 ENSG00000221643 SNORA77 ACA63|SNORA77A small nucleolar RNA, H/ACA box 77 snoRNA 204-97 chr14 90950799 90950949 + 2 NA intron (NM_001322238, intron 1 of 14) AluSz|SINE|Alu 109250 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 329-333 chr20 56214368 56214597 + 2 NA Intergenic AluJr|SINE|Alu -34250 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 282-175 chr18 8410208 8410392 + 2 NA Intergenic Intergenic -43266 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 371-316 chr5 87508797 87509160 + 2 NA Intergenic L1PA13|LINE|L1 -95945 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 301-186 chr19 55977888 55978144 + 2 NA intron (NM_001317000, intron 8 of 9) intron (NM_001317000, intron 8 of 9) -21710 NM_153447 126206 Hs.356872 NM_153447 ENSG00000171487 NLRP5 CLR19.8|MATER|NALP5|PAN11|PYPAF8 NLR family pyrin domain containing 5 protein-coding 249-418 chr8 83709127 83709299 + 2 NA Intergenic Intergenic 305455 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 189-178 chr6 63635173 63635322 + 2 NA promoter-TSS (NM_001290259) promoter-TSS (NM_001290259) -555 NM_001370350 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 344-369 chr4 167533119 167533330 + 2 NA Intergenic L2|LINE|L2 -298634 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 174-92 chr3 113570699 113570819 + 2 NA intron (NR_136285, intron 3 of 20) intron (NR_136285, intron 3 of 20) -24117 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 189-38 chr12 24980269 24980414 + 2 NA Intergenic Intergenic 17124 NM_001101339 196415 Hs.434453 NM_001101339 C12orf77 - chromosome 12 open reading frame 77 protein-coding 568-19 chr10 116858076 116858474 + 2 NA intron (NM_001242699, intron 3 of 13) HAL1|LINE|L1 -8553 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 442-132 chr2 78748661 78748968 + 2 NA Intergenic Intergenic 203283 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 259-350 chr6 109492404 109492659 + 2 NA TTS (NM_001145128) TTS (NM_001145128) -9294 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 153-36 chr15 93474001 93474144 + 2 NA Intergenic Intergenic 268006 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 264-356 chr6 55943704 55943916 + 2 NA Intergenic LTR90B|LTR|LTR -68220 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 394-229 chr4 5548562 5548812 + 2 NA Intergenic Intergenic 23531 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 283-179 chr17 54711802 54712047 + 2 NA Intergenic L1PA7|LINE|L1 -188767 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 467-143 chr2 168754334 168754753 + 2 NA intron (NM_001256126, intron 8 of 10) intron (NM_001256126, intron 8 of 10) 31886 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 230-72 chr12 4706063 4706234 + 2 NA intron (NR_110112, intron 1 of 3) L1MCa|LINE|L1 13954 NR_110112 101929549 Hs.663336 NR_110112 ENSG00000255474 GAU1 GALNT8-DT GALNT8 antisense upstream 1 ncRNA 195-223 chr7 21454289 21454444 + 2 NA intron (NM_003112, intron 3 of 5) MER50-int|LTR|ERV1 -16692 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 206-93 chr17 16556006 16556142 + 2 NA intron (NM_020653, intron 5 of 5) intron (NM_020653, intron 5 of 5) 13130 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 212-146 chr2 38560679 38560834 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 42172 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 475-111 chr18 6201519 6201876 + 2 NA intron (NM_001365769, intron 12 of 16) intron (NM_001365769, intron 12 of 16) -55047 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 501-143 chr21 28069857 28070141 + 2 NA intron (NR_126010, intron 1 of 4) intron (NR_126010, intron 1 of 4) -20404 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 248-407 chr8 106412307 106412530 + 2 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -35506 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 489-276 chrX 123048407 123048788 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -135646 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 237-409 chr9 103603815 103603997 + 2 NA Intergenic L1ME4a|LINE|L1 -278873 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 357-131 chr15 69106433 69106628 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 25680 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 266-459 chrX 89099115 89099301 + 2 NA Intergenic L1PBa|LINE|L1 351983 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 404-123 chr16 76243969 76244339 + 2 NA Intergenic Intergenic -33247 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 339-525 chr7 33645241 33645522 + 2 NA Intergenic Intergenic -259534 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 194-158 chr5 12205729 12205905 + 2 NA Intergenic L1PA15|LINE|L1 -301371 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 574-112 chr3 132118024 132118424 + 2 NA Intergenic Intergenic -78618 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 230-14 chr1 95527926 95528145 + 2 NA Intergenic Intergenic 17919 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 298-452 chr8 51129237 51129425 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 680114 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 230-315 chr5 145311663 145311799 + 2 NA Intergenic Intergenic 523611 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 554-131 chr20 6671982 6672526 + 2 NA Intergenic Intergenic 63882 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 258-325 chr5 83293862 83294103 + 2 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -177692 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 468-81 chr14 61951191 61951577 + 2 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 23689 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 266-159 chr18 75359552 75359786 + 2 NA Intergenic Intergenic 68034 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 408-164 chr2 129280380 129280731 + 2 NA Intergenic MIRc|SINE|MIR -6664 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 132-42 chr2 82147865 82147938 + 2 NA Intergenic MIR3|SINE|MIR -680955 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 624-125 chr8 136314271 136314784 + 2 NA Intergenic Intergenic -216271 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 565-156 chr6 52002988 52003472 + 2 NA intron (NM_138694, intron 35 of 66) intron (NM_138694, intron 35 of 66) 84383 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 312-271 chr2 164647359 164647627 + 2 NA Intergenic Intergenic -26011 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 184-18 chr1 200713497 200713656 + 2 NA Intergenic LTR16B2|LTR|ERVL -25996 NM_001297707 23271 Hs.23585 NM_203459 ENSG00000118200 CAMSAP2 CAMSAP1L1 calmodulin regulated spectrin associated protein family member 2 protein-coding 266-35 chr10 33801282 33801461 + 2 NA Intergenic AluJo|SINE|Alu -28691 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 523-43 chr10 85090083 85090424 + 2 NA Intergenic L1MB1|LINE|L1 108652 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 553-58 chr14 29452835 29453321 + 2 NA Intergenic Intergenic 474018 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 353-169 chr15 100171862 100172083 + 2 NA intron (NM_139057, intron 8 of 21) intron (NM_139057, intron 8 of 21) 170003 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 449-110 chr2 7313961 7314328 + 2 NA Intergenic Intergenic -107117 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 826-59 chr7 62744496 62745197 + 2 NA Intergenic ALR/Alpha|Satellite|centr 559210 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 343-549 chr8 105758035 105758365 + 2 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 302303 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 287-168 chr18 12390765 12390915 + 2 NA Intergenic L1ME3C|LINE|L1 -13564 NM_006796 10939 Hs.726355 NM_006796 ENSG00000141385 AFG3L2 SCA28|SPAX5 AFG3 like matrix AAA peptidase subunit 2 protein-coding 310-449 chr6 64589354 64589525 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) -711979 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 145-2 chr1 61475688 61475765 + 2 NA Intergenic Intergenic -178516 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 571-72 chr2 22337503 22337979 + 2 NA Intergenic AluYb8|SINE|Alu -198738 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 500-217 chr5 3129366 3129708 + 2 NA Intergenic Intergenic -48298 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 356-481 chr8 102145492 102145775 + 2 NA Intergenic L1ME4b|LINE|L1 20201 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 631-41 chr14 88368802 88369260 + 2 NA Intergenic L1MA2|LINE|L1 -16613 NM_001040428 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 329-347 chr3 114241 114535 + 2 NA Intergenic MER41A|LTR|ERV1 -82208 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 306-535 chr8 139286232 139286413 + 2 NA Intergenic Intergenic -372281 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 569-16 chr1 208733499 208733940 + 2 NA TTS (NR_146914) TTS (NR_146914) 5031 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 369-369 chr6 147705563 147705811 + 2 NA Intergenic Intergenic 196997 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 127-17 chr11 38636060 38636148 + 2 NA intron (NR_120554, intron 1 of 4) L1MA3|LINE|L1 10252 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 339-316 chr20 31332373 31332678 + 2 NA Intergenic Intergenic -23940 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 272-130 chr15 56445981 56446206 + 2 NA TTS (NM_001286449) TTS (NM_001286449) 19044 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 350-461 chr6 164311146 164311333 + 2 NA Intergenic L1MB7|LINE|L1 510824 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 416-283 chr5 145632366 145632683 + 2 NA Intergenic Intergenic 202818 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 333-558 chr8 36051665 36051973 + 2 NA Intergenic L2c|LINE|L2 -341499 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 531-178 chr4 59482307 59482792 + 2 NA Intergenic L1MB1|LINE|L1 468976 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 556-24 chr10 78245009 78245386 + 2 NA Intergenic Intergenic -3428 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 353-177 chr16 52013892 52014077 + 2 NA Intergenic Intergenic 59951 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 687-13 chr10 53948601 53949240 + 2 NA intron (NM_001354411, intron 24 of 34) intron (NM_001354411, intron 24 of 34) -537310 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 169-138 chr8 113079345 113079482 + 2 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 297739 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 220-219 chr3 34613347 34613512 + 2 NA Intergenic L1ME3A|LINE|L1 780594 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 189-205 chr8 63682849 63682982 + 2 NA Intergenic Intergenic -86515 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 365-71 chr11 55657051 55657368 + 2 NA Intergenic Intergenic 6305 NM_001004059 219431 Hs.553621 NM_001004059 ENSG00000174982 OR4S2 OR11-137|OR4S2P|OST725 olfactory receptor family 4 subfamily S member 2 protein-coding 545-250 chr8 135139824 135140198 + 2 NA Intergenic Intergenic -94120 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 216-123 chr16 24984705 24984828 + 2 NA intron (NM_001006634, intron 1 of 19) intron (NM_001006634, intron 1 of 19) 30603 NM_018054 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 243-430 chr7 123328402 123328578 + 2 NA Intergenic Intergenic -128519 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 601-32 chr12 108945454 108945981 + 2 NA intron (NM_018711, intron 6 of 15) MER5A|DNA|hAT-Charlie 65625 NM_001917 1610 Hs.113227 NM_001917 ENSG00000110887 DAO DAAO|DAMOX|OXDA D-amino acid oxidase protein-coding 386-256 chr4 32086128 32086394 + 2 NA intron (NR_125936, intron 1 of 2) MER52-int|LTR|ERV1 -63839 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 242-433 chr9 36811577 36811778 + 2 NA Intergenic L1ME2|LINE|L1 11922 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 316-439 chr5 51071721 51071948 + 2 NA Intergenic Intergenic -101647 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 323-590 chr9 137926769 137927078 + 2 NA intron (NM_001243812, intron 6 of 45) L1MB3|LINE|L1 20137 NR_132977 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 174-60 chr2 25657232 25657341 + 2 NA intron (NM_033147, intron 1 of 19) L1MC3|LINE|L1 -7064 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 320-438 chr5 42789398 42789656 + 2 NA intron (NM_001134848, intron 6 of 8) intron (NM_001134848, intron 6 of 8) 22365 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 571-20 chr10 67204118 67204572 + 2 NA intron (NM_001127384, intron 6 of 17) MSTA|LTR|ERVL-MaLR 192079 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 252-274 chr3 117636012 117636196 + 2 NA Intergenic Intergenic 54821 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 381-369 chr7 132710984 132711232 + 2 NA intron (NR_046323, intron 3 of 4) intron (NR_046323, intron 3 of 4) -47862 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 428-283 chr8 21553284 21553531 + 2 NA Intergenic MIRb|SINE|MIR 235468 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 294-441 chr7 71409515 71409786 + 2 NA intron (NM_022479, intron 3 of 10) intron (NM_022479, intron 3 of 10) -101880 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 346-107 chr12 72613253 72613552 + 2 NA intron (NM_013381, intron 12 of 18) intron (NM_013381, intron 12 of 18) -339893 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 148-55 chr3 94545545 94545678 + 2 NA Intergenic L3|LINE|CR1 -392652 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 219-60 chr11 126773098 126773255 + 2 NA intron (NM_001301097, intron 1 of 15) MLT2D|LTR|ERVL 117090 NR_120533 101929427 Hs.600341 NR_120532 ENSG00000254607 LOC101929427 - uncharacterized LOC101929427 ncRNA 335-44 chr10 10915792 10915991 + 2 NA intron (NM_001326328, intron 2 of 15) L2c|LINE|L2 36272 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 334-478 chr6 154257995 154258252 + 2 NA intron (NM_001130699, intron 4 of 12) L2b|LINE|L2 71958 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 287-131 chr14 47878063 47878290 + 2 NA Intergenic L1PA15|LINE|L1 -83162 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 353-20 chr1 105782272 105782449 + 2 NA Intergenic L1MA3|LINE|L1 -163425 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 299-434 chr7 139046762 139046996 + 2 NA 3' UTR (NM_001363491, exon 13 of 13) 3' UTR (NM_001363491, exon 13 of 13) -2722 NR_162108 113218503 NR_162108 MIR10399 - microRNA 10399 ncRNA 425-318 chr8 131626456 131626832 + 2 NA Intergenic MIRb|SINE|MIR -277449 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 522-88 chr14 87783600 87783980 + 2 NA Intergenic L2a|LINE|L2 -128496 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 461-146 chr2 187507497 187507869 + 2 NA intron (NM_006287, intron 1 of 7) L1PA3|LINE|L1 46752 NM_006287 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 629-110 chr6 40004482 40005009 + 2 NA Intergenic Intergenic -70283 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 330-269 chr2 79141038 79141211 + 2 NA Intergenic Intergenic -2697 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 303-160 chr16 54185276 54185472 + 2 NA Intergenic L1M4c|LINE|L1 85505 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 196-212 chr5 117946589 117946746 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) 216306 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 566-52 chr14 72695007 72695470 + 2 NA intron (NM_001280544, intron 6 of 9) MIRb|SINE|MIR 178418 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 389-253 chr4 20222776 20223100 + 2 NA Intergenic L1MA3|LINE|L1 -28967 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 299-331 chr4 85052688 85052873 + 2 NA Intergenic L1PA17|LINE|L1 85296 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 289-54 chr10 43884103 43884260 + 2 NA intron (NR_038268, intron 4 of 4) intron (NR_038268, intron 4 of 4) 24770 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 606-153 chr7 71256224 71256633 + 2 NA intron (NM_022479, intron 1 of 10) AluSz|SINE|Alu -51246 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 174-143 chr8 82454733 82454851 + 2 NA Intergenic Intergenic -457312 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 356-96 chr12 1119019 1119329 + 2 NA intron (NR_027948, intron 6 of 19) AluJo|SINE|Alu 91426 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 407-329 chr8 129344863 129345154 + 2 NA Intergenic LTR16A|LTR|ERVL -103768 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 543-80 chr15 36550925 36551336 + 2 NA Intergenic Intergenic -28496 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 273-251 chr2 228587480 228587657 + 2 NA intron (NR_151716, intron 1 of 3) intron (NR_151716, intron 1 of 3) 23827 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 310-175 chr16 66044543 66044807 + 2 NA Intergenic Intergenic -322016 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 192-147 chr4 86092417 86092556 + 2 NA intron (NM_001363657, intron 8 of 13) intron (NM_001363657, intron 8 of 13) -27320 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 248-340 chr6 28199732 28199896 + 2 NA Intergenic Intergenic 19115 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 383-333 chr6 1195233 1195550 + 2 NA Intergenic L1M5|LINE|L1 -94059 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 222-380 chr8 133971915 133972106 + 2 NA Intergenic Intergenic 85514 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 361-455 chr8 115170593 115170778 + 2 NA Intergenic L1MB3|LINE|L1 497328 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 352-168 chr16 10242591 10242784 + 2 NA Intergenic Intergenic -59779 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 357-366 chr5 153435454 153435652 + 2 NA Intergenic L2b|LINE|L2 -54971 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 352-461 chr6 77328944 77329277 + 2 NA Intergenic L1M5|LINE|L1 134912 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 273-118 chr13 51611559 51611766 + 2 NA intron (NM_052950, intron 1 of 11) MLT1L|LTR|ERVL-MaLR 27200 NM_052950 115825 Hs.46506 NM_052950 ENSG00000139668 WDFY2 PROF|WDF2|ZFYVE22 WD repeat and FYVE domain containing 2 protein-coding 404-111 chr15 46837648 46837900 + 2 NA Intergenic L1MEc|LINE|L1 -346315 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 429-254 chr6 86876594 86876973 + 2 NA Intergenic L1PA3|LINE|L1 -60745 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 210-38 chr10 88793922 88794085 + 2 NA Intergenic Intergenic -8727 NM_001128215 340654 Hs.55118 NM_001128215 ENSG00000173239 LIPM LIPL3|bA304I5.1 lipase family member M protein-coding 382-437 chr9 98880160 98880500 + 2 NA Intergenic Intergenic -63577 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 551-13 chr10 31115223 31115565 + 2 NA Intergenic L1MEd|LINE|L1 -72489 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 343-141 chr14 56799833 56800042 + 2 NA TTS (NM_021728) TTS (NM_021728) 5730 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 429-288 chr8 34259634 34259971 + 2 NA Intergenic Intergenic -524119 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 688-31 chr12 33665372 33665816 + 2 NA Intergenic Intergenic -225775 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 543-258 chr8 142116557 142116895 + 2 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat -59613 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 250-248 chr21 21037756 21037934 + 2 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 39436 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 418-207 chr5 13429451 13429838 + 2 NA Intergenic L2a|LINE|L2 -396758 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 510-206 chr4 62508304 62508765 + 2 NA Intergenic L2|LINE|L2 -346769 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 304-31 chr1 237715157 237715432 + 2 NA intron (NM_001035, intron 71 of 104) L2a|LINE|L2 -146881 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 595-60 chr16 13278348 13278925 + 2 NA Intergenic L1PB1|LINE|L1 377038 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 470-35 chr11 55073520 55073928 + 2 NA Intergenic ALR/Alpha|Satellite|centr -188431 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 482-192 chr4 109378511 109378842 + 2 NA Intergenic L2a|LINE|L2 -55039 NM_001318086 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 302-151 chr16 7188916 7189083 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -143846 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 242-277 chr4 102292161 102292348 + 2 NA intron (NM_022154, intron 5 of 7) L1MA7|LINE|L1 32058 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 547-185 chr5 72225366 72225714 + 2 NA intron (NM_015084, intron 9 of 10) intron (NM_015084, intron 9 of 10) 45753 NM_001324255 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 326-499 chr7 55928505 55928696 + 2 NA intron (NM_182633, intron 6 of 6) intron (NM_182633, intron 6 of 6) -23277 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 329-560 chr8 16403229 16403410 + 2 NA Intergenic L1M5|LINE|L1 -210528 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 423-282 chr7 141286362 141286759 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) 212496 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 303-418 chr7 21603512 21603728 + 2 NA intron (NM_001277115, intron 18 of 81) intron (NM_001277115, intron 18 of 81) 60581 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 150-99 chr7 35583390 35583476 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 111702 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 270-144 chr16 65777753 65777918 + 2 NA Intergenic Intergenic -201535 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 552-127 chr22 48913049 48913445 + 2 NA Intergenic L1ME2|LINE|L1 46477 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 275-225 chr20 41969459 41969667 + 2 NA Intergenic Intergenic -351186 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 431-210 chr4 103683599 103683979 + 2 NA intron (NM_001059, intron 1 of 4) L1MD|LINE|L1 36196 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 257-391 chr7 79854375 79854519 + 2 NA Intergenic Intergenic -280384 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 385-71 chr12 104785051 104785264 + 2 NA Intergenic LTR88a|LTR|Gypsy? 173133 NM_001352171 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 328-424 chr4 161036731 161036920 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -985908 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 284-50 chr10 81070181 81070370 + 2 NA Intergenic L2a|LINE|L2 420478 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 455-36 chr10 106804990 106805327 + 2 NA intron (NM_001206569, intron 3 of 25) intron (NM_001206569, intron 3 of 25) 359548 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 518-220 chr5 4796475 4796845 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 23179 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 268-326 chr5 164796233 164796379 + 2 NA Intergenic Intergenic 326027 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 336-52 chr10 2010519 2010791 + 2 NA intron (NR_040253, intron 2 of 2) intron (NR_040253, intron 2 of 2) 3693 NR_040253 282980 Hs.576810 NR_040253 ENSG00000234962 LINC00700 - long intergenic non-protein coding RNA 700 ncRNA 357-330 chr5 7968044 7968343 + 2 NA Intergenic (TCTGA)n|Simple_repeat|Simple_repeat 99045 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 476-32 chr10 95104665 95104999 + 2 NA Intergenic Intergenic -35335 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 169-147 chr9 32104506 32104609 + 2 NA Intergenic Intergenic -280046 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 156-25 chr12 18478999 18479140 + 2 NA intron (NM_001288774, intron 18 of 32) (TA)n|Simple_repeat|Simple_repeat 217529 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 320-259 chr2 68092887 68093173 + 2 NA Intergenic Intergenic -30026 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 279-297 chr4 84558952 84559176 + 2 NA Intergenic MER3|DNA|hAT-Charlie -24063 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 436-275 chr6 165075660 165076024 + 2 NA Intergenic AluSx3|SINE|Alu 233763 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 367-57 chr10 86547896 86548111 + 2 NA Intergenic Intergenic -26211 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 282-157 chr16 73382508 73382747 + 2 NA Intergenic Intergenic -4178 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 314-505 chr6 69912341 69912567 + 2 NA intron (NM_001858, intron 4 of 50) LTR88a|LTR|Gypsy? 45898 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 365-4 chr1 60047546 60047791 + 2 NA intron (NM_152377, intron 3 of 11) L1MC5|LINE|L1 26102 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 301-185 chr19 52127460 52127719 + 2 NA intron (NM_178523, intron 2 of 3) intron (NM_178523, intron 2 of 3) 12349 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 375-410 chr8 101855608 101855827 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -64748 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 144-32 chr16 56051446 56051534 + 2 NA Intergenic Intergenic -95459 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 363-99 chr12 24258671 24258962 + 2 NA intron (NM_001261414, intron 4 of 16) MIR|SINE|MIR 35545 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 309-472 chr6 51928123 51928353 + 2 NA intron (NM_138694, intron 37 of 66) LTR78B|LTR|ERV1 159375 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 205-30 chr10 33535807 33535958 + 2 NA Intergenic Intergenic -200977 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 326-437 chr5 169270967 169271140 + 2 NA intron (NM_003062, intron 1 of 35) intron (NM_003062, intron 1 of 35) -7359 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 451-244 chr8 132009785 132010143 + 2 NA intron (NR_136616, intron 23 of 23) L1M5|LINE|L1 49418 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 245-21 chr1 197767269 197767468 + 2 NA intron (NM_001195216, intron 2 of 2) intron (NM_001195216, intron 2 of 2) 8112 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 273-196 chr19 28991301 28991550 + 2 NA Intergenic LTR57|LTR|ERVL -11130 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 279-108 chr14 84795097 84795272 + 2 NA Intergenic Intergenic -476748 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 407-176 chr21 42329975 42330294 + 2 NA Intergenic Intergenic -14538 NM_003226 7033 Hs.82961 NM_003226 ENSG00000160180 TFF3 ITF|P1B|TFI trefoil factor 3 protein-coding 352-526 chr8 67831708 67832052 + 2 NA Intergenic Intergenic -85520 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 337-137 chr13 75187050 75187381 + 2 NA Intergenic LTR26B|LTR|ERV1 53166 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 299-466 chr8 122983619 122983893 + 2 NA Intergenic Intergenic 42016 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 439-72 chr12 49668915 49669223 + 2 NA intron (NM_001367835, intron 1 of 26) intron (NM_001367835, intron 1 of 26) 38336 NM_175736 91010 Hs.179838 NM_175736 ENSG00000161791 FMNL3 FHOD3|FRL2|WBP-3|WBP3 formin like 3 protein-coding 132 chr1 32411215 32411301 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -16817 NM_001143888 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 235-279 chr5 32644042 32644245 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -46729 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 382-99 chr13 112180374 112180638 + 2 NA Intergenic Intergenic -16827 NR_108094 101928698 Hs.528451 NR_108094 LINC01070 - long intergenic non-protein coding RNA 1070 ncRNA 273-197 chr19 31443787 31443952 + 2 NA Intergenic L1ME3A|LINE|L1 -94433 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 534-118 chr2 86646184 86646695 + 2 NA intron (NM_001198954, intron 2 of 7) L2a|LINE|L2 -22562 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 263-390 chr7 34063590 34063788 + 2 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 158150 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 349-362 chr4 27691971 27692219 + 2 NA Intergenic L1PA16|LINE|L1 474616 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 228-168 chr2 88721992 88722193 + 2 NA intron (NM_144563, intron 3 of 8) MER4-int|LTR|ERV1 30419 NM_144563 22934 Hs.469264 NM_144563 ENSG00000153574 RPIA RPI|RPIAD ribose 5-phosphate isomerase A protein-coding 337-298 chr2 220996123 220996441 + 2 NA Intergenic 7SLRNA|srpRNA|srpRNA 576022 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 168-106 chr7 66035966 66036069 + 2 NA Intergenic L1MC4|LINE|L1 -39802 NM_000048 435 Hs.632015 NM_000048 ENSG00000126522 ASL ASAL argininosuccinate lyase protein-coding 389-98 chr14 42942233 42942583 + 2 NA Intergenic Intergenic 1335552 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 216-205 chr21 31756792 31756967 + 2 NA Intergenic Intergenic -24761 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 468-219 chr4 37309235 37309637 + 2 NA intron (NM_001144990, intron 1 of 6) L1MA5|LINE|L1 64693 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 497-212 chr4 164454128 164454493 + 2 NA Intergenic L1MA5|LINE|L1 -71055 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 362-380 chr6 102880467 102880763 + 2 NA Intergenic Intergenic 1481630 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 245-98 chr12 50651566 50651730 + 2 NA intron (NM_173602, intron 3 of 37) L1MB1|LINE|L1 -112453 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 201-139 chr21 23984260 23984419 + 2 NA Intergenic MER45C|DNA|hAT-Tip100 337038 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 362-398 chr7 9876087 9876331 + 2 NA Intergenic Intergenic 241939 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 415-232 chr6 40279086 40279460 + 2 NA Intergenic Intergenic 76733 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 375-247 chr21 34298076 34298375 + 2 NA Intergenic Intergenic -65799 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 365-297 chr4 102247609 102247946 + 2 NA Intergenic Intergenic 76535 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 282-316 chr3 185036422 185036668 + 2 NA intron (NM_001009921, intron 45 of 46) intron (NM_001009921, intron 45 of 46) 116515 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 420-275 chr7 137708547 137708898 + 2 NA intron (NM_001321708, intron 1 of 32) L2a|LINE|L2 137610 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 353-336 chr3 119786569 119786777 + 2 NA intron (NM_022002, intron 1 of 8) intron (NM_022002, intron 1 of 8) 3963 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 246-355 chr6 131656840 131657051 + 2 NA intron (NR_133007, intron 5 of 23) intron (NR_133007, intron 5 of 23) 19643 NR_133007 5169 Hs.486489 NM_005021 ENSG00000154269 ENPP3 B10|CD203c|NPP3|PD-IBETA|PDNP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 protein-coding 383-397 chr8 129635961 129636292 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 44113 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 519-121 chr2 169974581 169974964 + 2 NA intron (NM_172070, intron 24 of 38) L1MA4|LINE|L1 147264 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 612-25 chr11 34376310 34376763 + 2 NA Intergenic L1M4c|LINE|L1 -18526 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 395-116 chr15 101514945 101515158 + 2 NA Intergenic AluJb|SINE|Alu -25067 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 372-259 chr2 136637270 136637489 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -128166 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 557-130 chr3 34320516 34320997 + 2 NA Intergenic MIR|SINE|MIR 522126 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 260-71 chr11 12430824 12431017 + 2 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 53349 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 237-165 chr2 19817903 19818077 + 2 NA Intergenic Intergenic -50864 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 271-375 chr6 51165580 51165762 + 2 NA Intergenic L1M2|LINE|L1 346800 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 769-63 chr7 62659016 62659537 + 2 NA Intergenic ALR/Alpha|Satellite|centr 644780 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 606-54 chr15 47263910 47264492 + 2 NA intron (NM_001198999, intron 1 of 19) L1PA13|LINE|L1 80112 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 230-360 chr7 106624498 106624717 + 2 NA Intergenic Intergenic 36551 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 555-29 chr11 22147615 22148093 + 2 NA Intergenic L1PA10|LINE|L1 -45231 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 369-171 chr19 13484466 13484708 + 2 NA intron (NM_023035, intron 1 of 46) L2b|LINE|L2 21873 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 374-68 chr12 45019287 45019517 + 2 NA intron (NM_001004329, intron 3 of 3) L1ME3A|LINE|L1 31697 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 241-387 chr8 30120287 30120511 + 2 NA intron (NM_001128208, intron 3 of 3) intron (NM_001128208, intron 3 of 3) 24266 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 FKSG89|GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 438-188 chr4 31557947 31558209 + 2 NA TTS (NR_149122) TTS (NR_149122) 51534 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 327-475 chr7 138503191 138503450 + 2 NA intron (NM_003852, intron 1 of 18) L1M5|LINE|L1 43061 NM_015905 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 628-91 chr3 119260962 119261488 + 2 NA intron (NR_046574, intron 3 of 3) L1MEc|LINE|L1 -20347 NM_003778 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 123-11 chr11 62120538 62120628 + 2 NA Intergenic Intergenic -3428 NM_001040694 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 329-321 chr20 4271396 4271627 + 2 NA Intergenic (AAAAT)n|Simple_repeat|Simple_repeat -22224 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 211-49 chr11 40247769 40247950 + 2 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) 45271 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 291-355 chr5 66132862 66133093 + 2 NA Intergenic L1M5|LINE|L1 -11323 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 261-291 chr4 99359157 99359306 + 2 NA Intergenic Intergenic -6485 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 191-58 chr15 27826284 27826435 + 2 NA intron (NM_001300984, intron 22 of 22) MIR|SINE|MIR 272956 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 379-122 chr17 71537668 71538002 + 2 NA Intergenic Intergenic -335656 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 363-315 chr4 33407918 33408117 + 2 NA Intergenic MER4D|LTR|ERV1 631876 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 414-302 chr7 38911514 38911827 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -2470 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 617-53 chr18 9295527 9295908 + 2 NA Intergenic HAL1ME|LINE|L1 -39056 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 423-169 chr22 47548438 47548705 + 2 NA Intergenic Intergenic -61460 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 157-73 chr2 217780840 217780950 + 2 NA Intergenic L1MDa|LINE|L1 -24302 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 706-8 chr10 71023041 71023451 + 2 NA Intergenic L1M4b|LINE|L1 84193 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 384-195 chr2 226872669 226872979 + 2 NA intron (NM_001349069, intron 5 of 8) intron (NM_001349069, intron 5 of 8) 36770 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 354-419 chr7 6379955 6380300 + 2 NA intron (NM_006908, intron 1 of 5) intron (NM_006908, intron 1 of 5) 5600 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 525-190 chr5 9477523 9477914 + 2 NA intron (NM_003966, intron 1 of 22) THE1D-int|LTR|ERVL-MaLR -33615 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 399-186 chr20 56571197 56571520 + 2 NA Intergenic AluSp|SINE|Alu -6205 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 473-134 chr2 63953460 63953812 + 2 NA intron (NM_001005739, intron 7 of 22) L1MC5|LINE|L1 65792 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 653-10 chr1 188731883 188732517 + 2 NA Intergenic HERVL-int|LTR|ERVL 1288572 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 598-11 chr1 199684733 199685140 + 2 NA Intergenic Intergenic -342774 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 573-146 chr5 82738570 82738912 + 2 NA Intergenic Intergenic -101414 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 479-198 chr5 68813079 68813474 + 2 NA Intergenic L1MC3|LINE|L1 216651 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 335-97 chr11 79356421 79356609 + 2 NA intron (NM_001098816, intron 1 of 33) MIRc|SINE|MIR 45594 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 328-512 chr6 138342986 138343210 + 2 NA 3' UTR (NM_020340, exon 34 of 34) 3' UTR (NM_020340, exon 34 of 34) -34545 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 267-357 chr5 156424644 156424883 + 2 NA intron (NM_001128209, intron 2 of 7) MER68|LTR|ERVL 97599 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 395-134 chr17 34768725 34769068 + 2 NA Intergenic L2a|LINE|L2 188147 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 234-204 chr2 226503032 226503201 + 2 NA Intergenic L1PA14|LINE|L1 155677 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 407-56 chr11 91641146 91641449 + 2 NA Intergenic LTR79|LTR|ERVL -583737 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 259-45 chr10 51645604 51645782 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 53902 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 407-349 chrUn_KI270515v1 663 892 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 531-93 chr18 73990613 73991072 + 2 NA Intergenic Intergenic 156992 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 173-68 chr2 66898063 66898202 + 2 NA Intergenic Intergenic -6304 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 683-25 chr17 34473359 34473819 + 2 NA Intergenic Intergenic 105780 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 275-260 chr4 41553421 41553650 + 2 NA intron (NM_001330786, intron 1 of 22) L2c|LINE|L2 15378 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 249-241 chr20 56140622 56140855 + 2 NA Intergenic Intergenic -107994 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 327-404 chr5 84490527 84490712 + 2 NA Intergenic L2b|LINE|L2 -105739 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 507-275 chr9 80777554 80777900 + 2 NA Intergenic L2b|LINE|L2 802704 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 428-120 chr2 40159430 40159818 + 2 NA intron (NM_001351483, intron 7 of 8) intron (NM_001351483, intron 7 of 8) 241990 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 505-99 chr15 55458716 55459063 + 2 NA intron (NM_001033560, intron 5 of 8) AluSg4|SINE|Alu 39695 NR_037923 100533483 Hs.285051 NR_037923 ENSG00000261771 DNAAF4-CCPG1 DYX1C1-CCPG1 DNAAF4-CCPG1 readthrough (NMD candidate) ncRNA 322-19 chr1 88289750 88289950 + 2 NA Intergenic Intergenic -394294 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 334-217 chr18 4053139 4053349 + 2 NA intron (NM_001242761, intron 2 of 11) THE1C|LTR|ERVL-MaLR 90891 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 309-584 chrX 81754755 81754988 + 2 NA Intergenic L1PA11|LINE|L1 552769 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 273-125 chr14 37161399 37161594 + 2 NA intron (NM_001171170, intron 1 of 10) MLT1B|LTR|ERVL-MaLR -10530 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 226-163 chr2 67550820 67551003 + 2 NA Intergenic Intergenic 153578 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 391-343 chr8 63696475 63696830 + 2 NA Intergenic Intergenic -72778 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 275-51 chr10 84834919 84835168 + 2 NA Intergenic Intergenic 363862 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 192-121 chr20 42299171 42299302 + 2 NA intron (NM_133170, intron 12 of 31) L1MC4|LINE|L1 -386247 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 235-124 chr16 59942470 59942684 + 2 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 87224 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 236-312 chr6 135997574 135997795 + 2 NA intron (NM_018945, intron 2 of 12) L1ME4a|LINE|L1 75143 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 229-234 chr21 21267625 21267785 + 2 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 120543 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 344-529 chrX 45649895 45650158 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -81062 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 340-421 chr4 152817345 152817668 + 2 NA intron (NM_001287433, intron 2 of 8) L1M4|LINE|L1 37552 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 322-313 chr22 28366235 28366443 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -93530 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 326-142 chr14 22410509 22410791 + 2 NA intron (NR_148362, intron 1 of 5) intron (NR_148362, intron 1 of 5) 22103 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 593-126 chr6 133725598 133725978 + 2 NA intron (NR_109982, intron 4 of 8) L1M2|LINE|L1 -95359 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 263-123 chr15 88773830 88774067 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -29488 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 293-28 chr10 4617588 4617842 + 2 NA Intergenic L1M4|LINE|L1 -38441 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 477-3 chr1 33729754 33730183 + 2 NA intron (NM_052896, intron 15 of 69) L1MC5|LINE|L1 -130507 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 200-49 chr11 48224355 48224493 + 2 NA Intergenic Intergenic 7614 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 265-407 chr9 13638608 13638783 + 2 NA Intergenic Intergenic -207366 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 296-284 chr3 15655698 15655918 + 2 NA intron (NM_001370752, intron 4 of 4) AluSx1|SINE|Alu 41563 NR_036085 100422990 NR_036085 ENSG00000264354 MIR3134 - microRNA 3134 ncRNA 361-13 chr1 102212325 102212648 + 2 NA Intergenic Intergenic -215252 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 388-316 chr6 144868662 144868896 + 2 NA Intergenic MER34C_|LTR|ERV1 463124 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 247-345 chr5 154551483 154551654 + 2 NA Intergenic L1MC1|LINE|L1 44504 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 438-182 chr3 182582706 182583088 + 2 NA Intergenic AluJr|SINE|Alu -75773 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 194-223 chr9 77664283 77664465 + 2 NA Intergenic Intergenic -16052 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 189-60 chr15 56302832 56303006 + 2 NA Intergenic L1MA3|LINE|L1 -57837 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 198-219 chr6 118396068 118396172 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -105253 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 304-5 chr1 42201646 42201913 + 2 NA intron (NM_001198852, intron 5 of 11) L1ME3|LINE|L1 -37034 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 537-85 chr17 52581781 52582189 + 2 NA Intergenic Intergenic 191463 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 197-171 chr5 86433017 86433166 + 2 NA Intergenic Intergenic 150647 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 563-91 chr2 100686154 100686572 + 2 NA Intergenic L1MEg|LINE|L1 82624 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 373-91 chr12 61275918 61276117 + 2 NA Intergenic L1PA11|LINE|L1 916822 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 440-221 chr6 103956524 103956927 + 2 NA Intergenic Intergenic 902821 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 206-206 chr5 60855999 60856109 + 2 NA Intergenic Intergenic -11780 NM_001104558 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 141-18 chr11 109129156 109129258 + 2 NA Intergenic Intergenic -292983 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 398-221 chr3 153354461 153354852 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -129839 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 552-187 chr6 46819527 46820000 + 2 NA intron (NM_005588, intron 7 of 13) intron (NM_005588, intron 7 of 13) 26374 NM_005588 4224 Hs.179704 NM_005588 ENSG00000112818 MEP1A PPHA meprin A subunit alpha protein-coding 487-22 chr1 178585016 178585476 + 2 NA Intergenic Intergenic 42450 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 646-51 chr19 9558842 9559293 + 2 NA Intergenic AluJr4|SINE|Alu 20401 NR_134921 101928238 Hs.324978 NR_134920 ENSG00000278611 ZNF426-DT - ZNF426 divergent transcript ncRNA 353-172 chr16 20357040 20357248 + 2 NA Intergenic Intergenic -4266 NM_003361 7369 Hs.654425 NM_003361 ENSG00000169344 UMOD ADMCKD2|FJHN|HNFJ|HNFJ1|MCKD2|THGP|THP uromodulin protein-coding 457-171 chr3 191703359 191703760 + 2 NA Intergenic L1MA4A|LINE|L1 242396 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 203-233 chr8 94799898 94800075 + 2 NA Intergenic MER85|DNA|PiggyBac -23301 NM_017864 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 525-124 chr2 109072176 109072544 + 2 NA Intergenic Intergenic -56845 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 191-21 chr1 216172550 216172700 + 2 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 100160 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 609-17 chr11 110420650 110421165 + 2 NA Intergenic PRIMA4-int|LTR|ERV1 -9041 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 457-261 chr8 118698256 118698561 + 2 NA intron (NR_038210, intron 3 of 4) MIR3|SINE|MIR -76445 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 332-34 chr1 199037429 199037700 + 2 NA intron (NR_126351, intron 1 of 2) L4_C_Mam|LINE|RTE-X -18600 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 295-245 chr2 212014492 212014675 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 411777 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 534-32 chr10 66247203 66247618 + 2 NA intron (NM_001127384, intron 13 of 17) L1MA2|LINE|L1 675985 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 603-7 chr1 162984351 162984842 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -84010 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 479-202 chr5 129691901 129692259 + 2 NA intron (NM_133638, intron 18 of 22) intron (NM_133638, intron 18 of 22) -56014 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 295-344 chr4 61338575 61338762 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 136496 NM_001371342 332-43 chr1 244288243 244288454 + 2 NA Intergenic Intergenic -64287 NM_001012970 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 510-264 chr7 93729267 93729759 + 2 NA Intergenic Intergenic 12585 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 276-70 chr10 126393371 126393540 + 2 NA Intergenic L1PB3|LINE|L1 -4978 NM_021641 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 184-108 chr21 32190592 32190754 + 2 NA Intergenic Intergenic 88376 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 218-197 chr21 25975390 25975551 + 2 NA intron (NM_001136131, intron 8 of 15) intron (NM_001136131, intron 8 of 15) 164920 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 288-385 chr6 155908753 155908968 + 2 NA Intergenic Intergenic -37937 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 305-67 chr10 69981101 69981289 + 2 NA Intergenic L1M2c|LINE|L1 -71651 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 328-214 chr17 72741788 72741972 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -101408 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 544-223 chr8 55128492 55128858 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 26647 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 433-150 chr20 13187218 13187623 + 2 NA Intergenic L1MCb|LINE|L1 -33854 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 238-360 chr7 52512831 52513032 + 2 NA Intergenic Intergenic -522702 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 446-202 chr3 143564760 143565044 + 2 NA intron (NM_173653, intron 8 of 15) intron (NM_173653, intron 8 of 15) 222656 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 638-121 chr5 54288281 54288700 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 22083 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 350-343 chr4 45793784 45794011 + 2 NA Intergenic Intergenic 330157 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 246-102 chr13 26180596 26180753 + 2 NA intron (NM_183045, intron 5 of 5) intron (NM_183045, intron 5 of 5) 41083 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 301-447 chr8 71486836 71487004 + 2 NA intron (NM_001370334, intron 2 of 19) LTR79|LTR|ERVL 60784 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 368-112 chr12 74606621 74606972 + 2 NA Intergenic AluSq2|SINE|Alu 68961 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 323-227 chr2 19356914 19357188 + 2 NA intron (NM_145260, intron 1 of 2) CpG 1572 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 273-71 chr11 21359274 21359432 + 2 NA intron (NM_201551, intron 14 of 18) L1PB2|LINE|L1 689767 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 211-147 chr2 128838161 128838342 + 2 NA Intergenic Intergenic -26349 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 288-479 chrX 58364672 58364953 + 2 NA Intergenic ALR/Alpha|Satellite|centr -454179 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 179-10 chr11 19649923 19650029 + 2 NA intron (NM_001111018, intron 1 of 37) L1ME1|LINE|L1 -62861 NM_182964 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 395-39 chr10 65913154 65913430 + 2 NA 3' UTR (NM_013266, exon 18 of 18) 3' UTR (NM_013266, exon 18 of 18) 341867 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 363-339 chr4 106663187 106663441 + 2 NA Intergenic Intergenic 229690 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 373-438 chrX 30158751 30158967 + 2 NA Intergenic Intergenic -56704 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 279-365 chr6 72013405 72013593 + 2 NA intron (NM_001350411, intron 2 of 3) L2c|LINE|L2 126796 NM_001350412 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 209-85 chr13 106336130 106336293 + 2 NA Intergenic Intergenic -40353 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 262-295 chr3 172977287 172977444 + 2 NA intron (NM_031955, intron 4 of 10) intron (NM_031955, intron 4 of 10) 163870 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 332-295 chr20 37598989 37599231 + 2 NA Intergenic Intergenic 24009 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 496-138 chr2 123831973 123832291 + 2 NA Intergenic L1M4c|LINE|L1 193042 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 327-356 chr4 33093904 33094153 + 2 NA Intergenic Intergenic 742990 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 363-460 chr8 131833287 131833482 + 2 NA Intergenic Intergenic -70709 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 200-185 chr4 18236555 18236691 + 2 NA Intergenic MIR|SINE|MIR -214748 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 284-349 chr6 62502568 62502801 + 2 NA Intergenic Intergenic -216457 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 319-317 chr22 47959991 47960229 + 2 NA Intergenic Intergenic -314254 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 502-99 chr15 67249522 67249972 + 2 NA intron (NM_001271885, intron 1 of 9) intron (NM_001271885, intron 1 of 9) 4914 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 378-57 chr10 51282312 51282609 + 2 NA intron (NM_001098512, intron 2 of 17) L2|LINE|L2 -17113 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 650-8 chr10 88506363 88506748 + 2 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 76763 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 409-42 chr11 100089829 100090184 + 2 NA intron (NM_001243270, intron 12 of 23) L1PA10|LINE|L1 533861 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 204-152 chr2 122934739 122934902 + 2 NA Intergenic L1ME2|LINE|L1 138661 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 258-76 chr11 113612981 113613142 + 2 NA Intergenic MER33|DNA|hAT-Charlie 93247 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 419-248 chr6 40596760 40597040 + 2 NA Intergenic Intergenic -9536 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 529-171 chr5 26787667 26788164 + 2 NA Intergenic Intergenic 250671 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 372-202 chr19 9657107 9657467 + 2 NA intron (NM_017656, intron 2 of 3) AluYj4|SINE|Alu 17813 NM_001130032 54811 Hs.371107 NM_017656 ENSG00000171466 ZNF562 - zinc finger protein 562 protein-coding 344-522 chr9 88929878 88930120 + 2 NA Intergenic L1MB8|LINE|L1 -60864 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 213-300 chr9 81047243 81047380 + 2 NA Intergenic Intergenic 642224 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 450-305 chr8 113680218 113680629 + 2 NA Intergenic Intergenic -243484 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 341-313 chr22 25136865 25137053 + 2 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -24267 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 371-234 chr3 10837342 10837651 + 2 NA intron (NM_014229, intron 4 of 13) MIRc|SINE|MIR 21268 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 431-81 chr14 57964322 57964711 + 2 NA Intergenic Intergenic -98424 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 165-92 chr4 60715850 60716009 + 2 NA Intergenic Intergenic -206690 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 308-499 chr8 99549988 99550271 + 2 NA intron (NM_017890, intron 30 of 61) intron (NM_017890, intron 30 of 61) -13268 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 454-92 chr14 71132373 71132739 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -187920 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 467-176 chr3 29869520 29869890 + 2 NA intron (NM_001003792, intron 7 of 13) intron (NM_001003792, intron 7 of 13) 64451 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 144-79 chr5 53833198 53833332 + 2 NA Intergenic L1MC5|LINE|L1 -13583 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 202-29 chr10 55399475 55399634 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -199488 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 344-258 chr2 171221694 171221938 + 2 NA intron (NM_001136554, intron 1 of 20) MLT1B|LTR|ERVL-MaLR 9477 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 450-316 chr8 135054199 135054478 + 2 NA Intergenic LTR16C|LTR|ERVL -179793 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 606-152 chr7 68813800 68814367 + 2 NA Intergenic Intergenic 783541 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 570-185 chr7 96936900 96937400 + 2 NA Intergenic MIRb|SINE|MIR -68403 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 547-58 chr13 75107559 75107999 + 2 NA Intergenic L1MD|LINE|L1 132602 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 313-392 chr4 83594291 83594548 + 2 NA intron (NM_001256421, intron 7 of 12) L1MC5a|LINE|L1 58311 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 192-141 chr4 31293536 31293674 + 2 NA Intergenic Intergenic 122461 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 453-223 chr6 53993843 53994215 + 2 NA intron (NR_125842, intron 2 of 3) L1MC4a|LINE|L1 -4861 NR_046832 100874282 Hs.571169 NR_046832 ENSG00000236996 MLIP-IT1 - MLIP intronic transcript 1 ncRNA 407-246 chr5 44023980 44024333 + 2 NA Intergenic Intergenic -364576 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 319-283 chr20 4328918 4329124 + 2 NA Intergenic Intergenic -79734 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 330-491 chr7 62973195 62973496 + 2 NA Intergenic ALR/Alpha|Satellite|centr 330711 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 734-80 chr8 139922695 139923089 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 177643 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 163-96 chr4 60213238 60213332 + 2 NA Intergenic Intergenic -709334 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 868-14 chr16 46487292 46487867 + 2 NA intron (NR_026556, intron 12 of 16) L1MA5|LINE|L1 81518 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 157-9 chr1 112591890 112592033 + 2 NA intron (NM_017744, intron 5 of 14) intron (NM_017744, intron 5 of 14) 27180 NM_001308264 54879 Hs.201921 NM_017744 ENSG00000007341 ST7L FAM4B|ST7R|STLR suppression of tumorigenicity 7 like protein-coding 180-151 chr6 133620999 133621147 + 2 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -200074 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 356-5 chr1 30992046 30992255 + 2 NA intron (NM_001020658, intron 7 of 21) intron (NM_001020658, intron 7 of 21) -23913 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 371-369 chr7 154214606 154214916 + 2 NA intron (NM_130797, intron 1 of 25) AluJo|SINE|Alu -90398 NM_001290252 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 374-253 chr3 99730631 99730954 + 2 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) -87070 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 400-73 chr12 92760415 92760646 + 2 NA intron (NM_001004330, intron 8 of 11) intron (NM_001004330, intron 8 of 11) 24041 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 245-191 chr2 82236268 82236431 + 2 NA Intergenic Intergenic -620454 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 521-161 chr3 47356904 47357309 + 2 NA Intergenic AluJb|SINE|Alu -23915 NM_015466 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 323-147 chr14 66112520 66112727 + 2 NA Intergenic Intergenic -373748 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 263-93 chr13 101496255 101496460 + 2 NA intron (NM_001271756, intron 1 of 9) MIR3|SINE|MIR 6405 NM_001271756 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 394-32 chr10 17893781 17894055 + 2 NA intron (NM_002438, intron 22 of 29) intron (NM_002438, intron 22 of 29) 48811 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 342-386 chr5 26076367 26076662 + 2 NA Intergenic MER76|LTR|ERVL 885561 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 302-176 chr17 76224145 76224435 + 2 NA intron (NM_052916, intron 1 of 18) intron (NM_052916, intron 1 of 18) 16203 NM_001330501 114804 Hs.500643 NM_052916 ENSG00000141576 RNF157 - ring finger protein 157 protein-coding 1594 chr1 163631936 163632959 + 2 NA Intergenic L1M2|LINE|L1 -209256 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 688-3 chr1 79045542 79046145 + 2 NA Intergenic LTR1A2|LTR|ERV1 -39113 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 236-299 chr6 38798419 38798585 + 2 NA intron (NM_001371, intron 20 of 91) intron (NM_001371, intron 20 of 91) 83191 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 333-178 chr16 78711523 78711766 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 611990 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 272-176 chr2 23133169 23133376 + 2 NA Intergenic Intergenic -251907 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 369-347 chr6 2611947 2612254 + 2 NA Intergenic AluJr|SINE|Alu -22400 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 234-395 chr8 138340923 138341109 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 156245 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 340-298 chr2 220663363 220663597 + 2 NA Intergenic Intergenic -756915 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 334-483 chr7 4304890 4305109 + 2 NA Intergenic AluSq|SINE|Alu -170162 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 418-267 chr7 71390962 71391252 + 2 NA intron (NM_022479, intron 3 of 10) intron (NM_022479, intron 3 of 10) -83337 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 465-50 chr11 54870482 54870747 + 2 NA Intergenic ALR/Alpha|Satellite|centr 163782 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 482-229 chr6 136427304 136427678 + 2 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 39384 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 115-22 chr2 226025979 226026046 + 2 NA Intergenic Intergenic -116782 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 228-383 chrX 58078474 58078668 + 2 NA Intergenic ALR/Alpha|Satellite|centr -167938 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 342-315 chr3 62486922 62487219 + 2 NA intron (NM_003716, intron 21 of 29) MER66B|LTR|ERV1 -113520 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 276-195 chr18 1552106 1552311 + 2 NA Intergenic L1ME3|LINE|L1 -192579 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 316-420 chr5 3458753 3459062 + 2 NA intron (NR_147000, intron 2 of 2) intron (NR_147000, intron 2 of 2) 6091 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 529-134 chr22 30201772 30202240 + 2 NA Intergenic Intergenic -37188 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 416-321 chr7 96718709 96719047 + 2 NA Intergenic Intergenic -8987 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 443-46 chr11 8107155 8107456 + 2 NA non-coding (NR_144484, exon 5 of 5) non-coding (NR_144484, exon 5 of 5) 25943 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 284-172 chr18 25010786 25010964 + 2 NA Intergenic MIRb|SINE|MIR -22896 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 202-246 chr8 9279405 9279550 + 2 NA Intergenic Intergenic -45574 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 271-469 chr8 143851185 143851342 + 2 NA Intergenic AluJo|SINE|Alu -10290 NM_178564 340371 Hs.521926 NM_178564 ENSG00000185189 NRBP2 TRG16|pp9320 nuclear receptor binding protein 2 protein-coding 294-40 chr10 61222672 61222912 + 2 NA Intergenic Intergenic 206517 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 334-306 chr20 9133064 9133322 + 2 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 64139 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 239-43 chr10 90078007 90078228 + 2 NA Intergenic MER67C|LTR|ERV1 -120744 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 330-492 chr7 69472197 69472440 + 2 NA Intergenic Intergenic 125306 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 297-406 chr6 88130497 88130699 + 2 NA Intergenic MIR|SINE|MIR 14739 NM_033181 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 198-42 chr11 88828867 88829004 + 2 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 219137 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 138-105 chrX 65074928 65074999 + 2 NA Intergenic L1M3d|LINE|L1 -40222 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 377-293 chr4 116016267 116016545 + 2 NA Intergenic HERV3-int|LTR|ERV1 -283319 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 333-355 chr3 90418917 90419123 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1311399 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 354-330 chr4 61328933 61329175 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 126882 NM_001371342 269-105 chr13 67937529 67937755 + 2 NA Intergenic MER110-int|LTR|ERV1 565255 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 587-71 chr2 63303828 63304235 + 2 NA intron (NR_148704, intron 14 of 18) L1P5|LINE|L1 133976 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 367-7 chr1 30324798 30324983 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -287278 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 361-321 chr4 59150771 59150953 + 2 NA Intergenic Intergenic 137289 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 291-290 chr3 74115704 74115960 + 2 NA Intergenic MER92B|LTR|ERV1 306588 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 277-128 chr15 88863144 88863393 + 2 NA intron (NM_013227, intron 13 of 17) intron (NM_013227, intron 13 of 17) 32276 NM_178232 145864 Hs.447530 NM_178232 ENSG00000140511 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 264-54 chr10 79059740 79059972 + 2 NA intron (NR_024431, intron 3 of 9) L3|LINE|CR1 7592 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 238-399 chr8 131137896 131138057 + 2 NA Intergenic Intergenic -97067 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 354-245 chr2 195967326 195967620 + 2 NA intron (NM_018897, intron 17 of 64) L1MA3|LINE|L1 101364 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 367-189 chr2 30786415 30786679 + 2 NA intron (NM_144575, intron 2 of 22) intron (NM_144575, intron 2 of 22) 20899 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 305-377 chr4 40366724 40366951 + 2 NA Intergenic Intergenic 31504 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 178-162 chrX 79153869 79154036 + 2 NA Intergenic Intergenic -17020 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 214-148 chr19 32963626 32963813 + 2 NA intron (NM_032816, intron 2 of 18) intron (NM_032816, intron 2 of 18) 8239 NM_032816 84902 Hs.599703 NM_032816 ENSG00000121289 CEP89 CCDC123|CEP123 centrosomal protein 89 protein-coding 343-213 chr19 36640881 36641099 + 2 NA intron (NM_001297623, intron 4 of 4) L2c|LINE|L2 25847 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 276-452 chr8 82633155 82633422 + 2 NA Intergenic Intergenic -278816 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 440-227 chr6 142545855 142546172 + 2 NA intron (NR_027312, intron 1 of 2) intron (NR_027312, intron 1 of 2) 91823 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 269-350 chr6 74210801 74210950 + 2 NA intron (NR_110856, intron 1 of 3) L2c|LINE|L2 141424 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 689-92 chr7 18893609 18894057 + 2 NA intron (NM_058176, intron 21 of 22) L2a|LINE|L2 223803 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 534-17 chr1 207127091 207127474 + 2 NA intron (NM_000715, intron 7 of 11) intron (NM_000715, intron 7 of 11) 23049 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 600-87 chr3 172438260 172438808 + 2 NA Intergenic L1ME4a|LINE|L1 9922 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 329-196 chr15 99941076 99941280 + 2 NA Intergenic L1MA9|LINE|L1 134155 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 275-94 chr13 76809780 76809969 + 2 NA Intergenic Intergenic 76531 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 360-151 chr16 12138617 12138944 + 2 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 162046 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 357-279 chr3 101204413 101204602 + 2 NA Intergenic Intergenic 116068 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 195-44 chr12 1044621 1044755 + 2 NA intron (NR_027949, intron 2 of 15) intron (NR_027949, intron 2 of 15) 16940 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 135-41 chr21 23067182 23067265 + 2 NA Intergenic Intergenic -12061 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 335-52 chr10 53522117 53522349 + 2 NA Intergenic Intergenic -750533 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 210-181 chr3 122051881 122052039 + 2 NA Intergenic Intergenic -3402 NM_175862 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 388-327 chr7 64894185 64894475 + 2 NA Intergenic Intergenic -8912 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 308-523 chr8 135319566 135319790 + 2 NA Intergenic Intergenic 85547 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 242-86 chr12 125791227 125791384 + 2 NA Intergenic Intergenic 168853 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 390-241 chr3 73738335 73738650 + 2 NA Intergenic Intergenic -70752 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 569-110 chr20 42456696 42457127 + 2 NA intron (NM_133170, intron 8 of 31) L1ME3D|LINE|L1 -228572 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 282-45 chr10 54076111 54076370 + 2 NA intron (NM_001354411, intron 18 of 34) L1MB3|LINE|L1 -409990 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 503-207 chr4 5225835 5226293 + 2 NA intron (NM_001306082, intron 4 of 12) intron (NM_001306082, intron 4 of 12) 174584 NM_018401 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 278-180 chr18 61022770 61023031 + 2 NA Intergenic Intergenic -310530 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 398-72 chr12 28594723 28595065 + 2 NA Intergenic L1ME4a|LINE|L1 -404156 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 256-42 chr10 56098014 56098244 + 2 NA Intergenic Intergenic 263130 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 478-73 chr13 107108356 107108722 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 212424 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 544-123 chr2 125150697 125151053 + 2 NA Intergenic L1M5|LINE|L1 967110 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 532-34 chr11 75937941 75938291 + 2 NA intron (NM_003369, intron 6 of 14) intron (NM_003369, intron 6 of 14) 122906 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 464-183 chr4 66666369 66666736 + 2 NA Intergenic Intergenic 389728 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 375-309 chr4 181428049 181428371 + 2 NA Intergenic Intergenic -163181 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 401-23 chr10 25284149 25284511 + 2 NA intron (NM_020752, intron 2 of 10) L1ME1|LINE|L1 -108054 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 778-14 chr11 32377656 32378238 + 2 NA Intergenic Intergenic 22453 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 159-50 chr20 24775669 24775777 + 2 NA Intergenic L1MEd|LINE|L1 -173546 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 196-77 chr14 72392869 72393037 + 2 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -123867 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 160-106 chr7 30763840 30763926 + 2 NA intron (NR_037598, intron 2 of 19) intron (NR_037598, intron 2 of 19) -7534 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 445-271 chr8 78057520 78057742 + 2 NA Intergenic Intergenic -458709 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 322-446 chr6 3306358 3306542 + 2 NA intron (NM_021945, intron 5 of 10) MIR|SINE|MIR 47503 NM_001135750 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome assembly chaperone 4 protein-coding 261-147 chr17 61632879 61633082 + 2 NA Intergenic L1MA4|LINE|L1 -41761 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 237-21 chr1 183802810 183802980 + 2 NA intron (NM_001297669, intron 3 of 18) intron (NM_001297669, intron 3 of 18) -2225 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 346-369 chr4 157774790 157775005 + 2 NA Intergenic Intergenic 202407 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 223-356 chr8 137748897 137749106 + 2 NA Intergenic Intergenic 334544 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 721-85 chr8 139387512 139388082 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 315326 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 400-329 chr7 126783402 126783630 + 2 NA intron (NM_001371085, intron 6 of 10) intron (NM_001371085, intron 6 of 10) 274668 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 651-61 chr2 50216048 50216600 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 131430 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 428-169 chr3 6002180 6002438 + 2 NA Intergenic L1ME3E|LINE|L1 -752054 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 278-462 chrX 64788847 64789083 + 2 NA Intergenic Intergenic 187485 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 399-185 chr20 42341791 42342142 + 2 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -343517 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 221-124 chr18 42811408 42811584 + 2 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 304189 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 314-431 chr4 78703443 78703680 + 2 NA Intergenic LTR8A|LTR|ERV1 57567 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 371-11 chr1 90320227 90320545 + 2 NA Intergenic Intergenic 325276 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 356-282 chr20 7302441 7302780 + 2 NA non-coding (NR_135005, exon 2 of 2) non-coding (NR_135005, exon 2 of 2) 4822 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 367-495 chrX 141956502 141956743 + 2 NA Intergenic L1MC2|LINE|L1 52728 NM_005462 9947 Hs.132194 NM_005462 ENSG00000155495 MAGEC1 CT7|CT7.1 MAGE family member C1 protein-coding 292-9 chr1 64411956 64412216 + 2 NA Intergenic L1ME2|LINE|L1 -58043 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 449-290 chr8 137000415 137000755 + 2 NA Intergenic L1PB1|LINE|L1 413003 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 223-136 chr19 29035591 29035753 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 33117 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 351-182 chr18 4213773 4214017 + 2 NA intron (NM_001242761, intron 1 of 11) L2c|LINE|L2 -50707 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 187-26 chr10 122446464 122446575 + 2 NA Intergenic L1ME4a|LINE|L1 -8134 NM_001099667 387715 Hs.120359 NM_001099667 ENSG00000254636 ARMS2 ARMD8 age-related maculopathy susceptibility 2 protein-coding 231-75 chr12 127087806 127088028 + 2 NA Intergenic Intergenic -27520 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 264-133 chr14 67698488 67698628 + 2 NA Intergenic L2b|LINE|L2 -2794 NM_001252650 51109 Hs.719925 NM_016026 ENSG00000072042 RDH11 ARSDR1|CGI82|HCBP12|MDT1|PSDR1|RALR1|RDJCSS|SCALD|SDR7C1 retinol dehydrogenase 11 protein-coding 419-213 chr4 135755799 135756151 + 2 NA Intergenic MER31A|LTR|ERV1 132118 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 277-132 chr16 13293611 13293831 + 2 NA Intergenic Intergenic 392123 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 286-93 chr12 65545596 65545836 + 2 NA intron (NR_135033, intron 2 of 2) intron (NR_135033, intron 2 of 2) 11595 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 340-506 chr7 52473438 52473691 + 2 NA Intergenic Intergenic -562069 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 411-133 chr19 27670283 27670629 + 2 NA Intergenic HSAT4|Satellite|centr -122975 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 601-151 chr8 139071321 139071716 + 2 NA Intergenic Intergenic -157477 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 477-85 chr13 29085879 29086278 + 2 NA intron (NM_001366651, intron 4 of 14) L1PA15|LINE|L1 61621 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 327-103 chr11 134526907 134527182 + 2 NA Intergenic L1MB3|LINE|L1 90562 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 241-242 chr3 103937059 103937280 + 2 NA Intergenic L1MEc|LINE|L1 -413053 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 183-169 chr9 24087043 24087190 + 2 NA Intergenic Intergenic -236515 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 325-426 chr5 12051598 12051763 + 2 NA Intergenic L1ME3B|LINE|L1 -147234 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 284-426 chr8 137549459 137549616 + 2 NA Intergenic L1MA9|LINE|L1 -135949 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 239-100 chr14 54670064 54670295 + 2 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -84654 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 665-22 chr12 41370603 41371058 + 2 NA intron (NM_001164595, intron 3 of 9) L1MEd|LINE|L1 -66909 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 275-203 chr2 129627438 129627618 + 2 NA Intergenic L2a|LINE|L2 249963 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 206-146 chr21 24345409 24345573 + 2 NA Intergenic L1MB1|LINE|L1 -24114 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 218-198 chr21 26582164 26582311 + 2 NA Intergenic Intergenic -8951 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 364-112 chr12 111107892 111108126 + 2 NA intron (NM_001370598, intron 1 of 21) L1MC4a|LINE|L1 8005 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 700-68 chr3 189309346 189309937 + 2 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -69047 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 144-8 chr1 120178393 120178508 + 2 NA Intergenic Intergenic -1930 NM_004892 9554 Hs.632438 NM_004892 ENSG00000265808 SEC22B ERS-24|SEC22L1 SEC22 homolog B, vesicle trafficking protein (gene/pseudogene) protein-coding 297-517 chr9 119852863 119853018 + 2 NA Intergenic Intergenic -82120 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 124-18 chr12 14636733 14636803 + 2 NA intron (NM_004963, intron 19 of 26) L1MA4A|LINE|L1 59831 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 369-452 chrX 54744364 54744696 + 2 NA Intergenic L1M1|LINE|L1 53725 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 486-206 chr3 100963201 100963514 + 2 NA intron (NM_001349332, intron 1 of 35) L2b|LINE|L2 30133 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 292-281 chr3 33627217 33627430 + 2 NA intron (NM_001365634, intron 9 of 35) intron (NM_001365634, intron 9 of 35) 32356 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 357-274 chr3 89624964 89625299 + 2 NA Intergenic Intergenic 517510 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 271-408 chr7 68968035 68968180 + 2 NA Intergenic Intergenic 629517 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 202-176 chr3 170327143 170327287 + 2 NA Intergenic L1MC5a|LINE|L1 -30500 NM_001145098 6498 Hs.536655 NM_005414 ENSG00000136603 SKIL SNO|SnoA|SnoI|SnoN SKI like proto-oncogene protein-coding 356-205 chr18 13166084 13166272 + 2 NA Intergenic L1PB1|LINE|L1 -52582 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 735-10 chr11 96030403 96031070 + 2 NA intron (NM_032427, intron 2 of 4) intron (NM_032427, intron 2 of 4) -106529 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 360-482 chr9 1640080 1640302 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -375156 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 340-516 chr7 126283611 126283821 + 2 NA Intergenic Intergenic 774468 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 258-282 chr4 34332412 34332609 + 2 NA Intergenic MLT2B3|LTR|ERVL -62763 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 375-373 chr7 38050561 38050872 + 2 NA Intergenic LTR12C|LTR|ERV1 -127529 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 509-139 chr22 24481769 24482168 + 2 NA intron (NR_028483, intron 1 of 7) MIRb|SINE|MIR 13106 NR_028484 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 363-405 chr7 19963035 19963303 + 2 NA intron (NR_110114, intron 4 of 5) MIR|SINE|MIR 177257 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 346-302 chr3 20846449 20846778 + 2 NA Intergenic Intergenic 504145 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 372-141 chr14 53922186 53922501 + 2 NA Intergenic Intergenic 26141 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 259-282 chr4 46333026 46333218 + 2 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 56257 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 286-221 chr2 145115641 145115822 + 2 NA Intergenic Intergenic 447764 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 218-164 chr2 117021718 117021905 + 2 NA Intergenic Intergenic -792880 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 269-173 chr19 39728645 39728862 + 2 NA Intergenic Intergenic 9276 NM_001828 1178 Hs.889 NM_001828 ENSG00000105205 CLC GAL10|Gal-10|LGALS10|LGALS10A|LPPL_HUMAN Charcot-Leyden crystal galectin protein-coding 359-298 chr21 31185168 31185423 + 2 NA intron (NM_001353686, intron 14 of 27) intron (NM_001353686, intron 14 of 27) -24355 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 377-225 chr2 153712000 153712331 + 2 NA Intergenic Intergenic -159757 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 331-203 chr17 39821545 39821784 + 2 NA intron (NM_001257409, intron 2 of 5) MER21-int|LTR|ERVL 42524 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 439-253 chr6 159337253 159337568 + 2 NA Intergenic Intergenic -46121 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 289-370 chr5 61893647 61893841 + 2 NA Intergenic L1MEc|LINE|L1 -158046 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 542-152 chr4 77316734 77317174 + 2 NA Intergenic Intergenic 159747 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 359-223 chr2 31504614 31504829 + 2 NA Intergenic Intergenic 76217 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 187-119 chr3 144036076 144036229 + 2 NA Intergenic Intergenic 63071 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 350-191 chr18 29692107 29692398 + 2 NA Intergenic Intergenic -606658 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 221-293 chr8 11333124 11333313 + 2 NA Intergenic L1M4c|LINE|L1 2232 NM_054028 83650 Hs.458397 NM_054028 ENSG00000177710 SLC35G5 AMAC|AMAC1L2 solute carrier family 35 member G5 protein-coding 272-60 chr10 90626900 90627111 + 2 NA Intergenic L1ME2|LINE|L1 -86200 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 471-176 chr3 168394499 168394837 + 2 NA intron (NR_021485, intron 3 of 15) L1ME1|LINE|L1 145146 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 344-260 chr2 192577000 192577288 + 2 NA Intergenic Intergenic -172701 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 268-134 chr15 91073369 91073610 + 2 NA Intergenic Intergenic -26099 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 210-316 chrX 83700877 83701067 + 2 NA Intergenic L1PA15|LINE|L1 -160154 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 303-253 chr20 51545891 51546153 + 2 NA intron (NM_001258292, intron 1 of 9) intron (NM_001258292, intron 1 of 9) -3303 NM_001258297 4773 Hs.744148 NM_012340 ENSG00000101096 NFATC2 NFAT1|NFATP nuclear factor of activated T cells 2 protein-coding 593-135 chr7 52479706 52480287 + 2 NA Intergenic Intergenic -555637 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 219-351 chr8 36978922 36979081 + 2 NA Intergenic Intergenic 194627 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 565-130 chr4 70068469 70068840 + 2 NA intron (NR_003720, intron 1 of 12) MIR3|SINE|MIR 1268 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 555-91 chr2 50379335 50379798 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -31810 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 362-365 chr5 164379170 164379360 + 2 NA Intergenic L1MA6|LINE|L1 88137 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 293-149 chr17 12521586 12521833 + 2 NA Intergenic Intergenic -28259 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 537-165 chr4 30619616 30619980 + 2 NA Intergenic Intergenic -100571 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 206-162 chr3 76052364 76052515 + 2 NA Intergenic Intergenic -266890 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 163-52 chr16 13109636 13109767 + 2 NA intron (NM_001145204, intron 2 of 4) L1MB7|LINE|L1 208103 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 368-405 chr6 131755514 131755862 + 2 NA Intergenic MIR|SINE|MIR -36484 NR_039610 100616455 NR_039610 ENSG00000266807 MIR548H5 - microRNA 548h-5 ncRNA 360-386 chr5 152307738 152308084 + 2 NA Intergenic MER49|LTR|ERV1 97368 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 436-225 chr5 3567864 3568140 + 2 NA Intergenic Intergenic -27830 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 539-116 chr2 104239146 104239510 + 2 NA Intergenic LTR33|LTR|ERVL 169004 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 241-369 chr7 47025511 47025701 + 2 NA Intergenic Intergenic -328484 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 500-251 chr6 83730176 83730632 + 2 NA Intergenic Intergenic 20962 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 253-87 chr11 115379758 115379955 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -16900 NR_135102 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 225-229 chr3 162297786 162297927 + 2 NA Intergenic Intergenic 801048 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 652-76 chr20 56121597 56122124 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -116341 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 434-269 chr7 92984242 92984533 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 133592 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 240-389 chr6 168535447 168535637 + 2 NA intron (NM_001166412, intron 4 of 12) intron (NM_001166412, intron 4 of 12) 94358 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 609-66 chr20 33225346 33225861 + 2 NA intron (NM_178466, intron 4 of 6) L2c|LINE|L2 8251 NM_178466 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 620-62 chr2 52194442 52195052 + 2 NA intron (NR_135237, intron 7 of 10) Tigger3b|DNA|TcMar-Tigger -175901 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 222-16 chr1 185516277 185516452 + 2 NA Intergenic LTR49-int|LTR|ERV1 112124 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 595-40 chr12 39942457 39942859 + 2 NA intron (NM_052885, intron 4 of 9) L1PB1|LINE|L1 163423 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 250-192 chr2 34604844 34605073 + 2 NA Intergenic L2a|LINE|L2 -72599 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 500-11 chr1 169857190 169857531 + 2 NA intron (NM_181093, intron 11 of 13) MER2B|DNA|TcMar-Tigger 36536 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 401-81 chr13 110788071 110788285 + 2 NA Intergenic L1MC5|LINE|L1 24906 NR_135280 283486 Hs.447504 NR_135280 ENSG00000259831 LINC00567 - long intergenic non-protein coding RNA 567 ncRNA 355-385 chr5 3072048 3072375 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -105624 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 268-282 chr4 75901997 75902146 + 2 NA intron (NM_006239, intron 1 of 16) intron (NM_006239, intron 1 of 16) 381 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 350-91 chr12 27957991 27958253 + 2 NA TTS (NM_198966) TTS (NM_198966) 11854 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 408-166 chr2 134681908 134682208 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 36942 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 221-21 chr1 186513834 186514003 + 2 NA Intergenic L1M1|LINE|L1 -52804 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 655-136 chr9 31130668 31131101 + 2 NA Intergenic Intergenic 250606 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 327-167 chr15 46058454 46058672 + 2 NA Intergenic LTR53-int|LTR|ERVL 353368 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 284-41 chr10 59247507 59247769 + 2 NA exon (NM_001001971, exon 12 of 12) exon (NM_001001971, exon 12 of 12) 70171 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 385-178 chr2 105549937 105550259 + 2 NA Intergenic L1M5|LINE|L1 60461 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 397-345 chr8 129525098 129525399 + 2 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -41106 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 175-94 chr20 41833236 41833391 + 2 NA Intergenic Intergenic -214936 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 331-109 chr12 14479189 14479505 + 2 NA intron (NM_181352, intron 12 of 14) intron (NM_181352, intron 12 of 14) -88385 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 332-386 chr4 113771353 113771663 + 2 NA Intergenic Intergenic -9581 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 238-307 chr5 161278383 161278561 + 2 NA Intergenic Intergenic 269652 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 559-196 chr8 141639501 141639877 + 2 NA Intergenic Intergenic -132459 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 632-52 chr2 64323370 64323850 + 2 NA Intergenic Intergenic -17149 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 296-408 chr6 93381310 93381531 + 2 NA intron (NM_004440, intron 3 of 16) intron (NM_004440, intron 3 of 16) 38139 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 336-35 chr1 167299897 167300137 + 2 NA intron (NM_001365848, intron 2 of 17) L1PA17|LINE|L1 -29053 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 346-490 chr8 87157000 87157211 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 290690 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 181-122 chr5 44535343 44535507 + 2 NA Intergenic Intergenic -25143 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 357-212 chr2 123526299 123526595 + 2 NA Intergenic Intergenic -452966 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 699-78 chr4 119496348 119496889 + 2 NA 3' UTR (NM_001083, exon 21 of 21) 3' UTR (NM_001083, exon 21 of 21) 41835 NR_037630 645513 Hs.677546 NR_037630 ENSG00000245958 LOC645513 - septin 7 pseudogene pseudo 281-80 chr12 18017670 18017919 + 2 NA Intergenic L1PA15|LINE|L1 72399 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 277-124 chr15 26632613 26632773 + 2 NA intron (NM_000814, intron 3 of 8) intron (NM_000814, intron 3 of 8) -3603 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 636-155 chr8 139486496 139486956 + 2 NA Intergenic Intergenic 216397 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 234-39 chr10 65320184 65320385 + 2 NA Intergenic Intergenic -251141 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 627-71 chr3 63635328 63635792 + 2 NA Intergenic L1MD1|LINE|L1 -17115 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 283-369 chr5 89893877 89894080 + 2 NA Intergenic L1MA2|LINE|L1 122742 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 253-319 chr5 23198227 23198433 + 2 NA Intergenic MER50|LTR|ERV1 -309279 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 212-214 chr3 93949190 93949376 + 2 NA intron (NM_001314077, intron 1 of 15) intron (NM_001314077, intron 1 of 15) 24798 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 632-56 chr2 107672957 107673386 + 2 NA Intergenic L1MC2|LINE|L1 -80941 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 367-130 chr14 82307145 82307389 + 2 NA Intergenic Intergenic -335365 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 322-397 chr4 172097722 172097893 + 2 NA intron (NM_001034845, intron 2 of 12) MLT1J|LTR|ERVL-MaLR -284200 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 479-162 chr4 64455455 64455702 + 2 NA Intergenic L2a|LINE|L2 -46118 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 327-481 chr8 52075328 52075594 + 2 NA Intergenic Intergenic -118901 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 277-130 chr16 3209951 3210197 + 2 NA Intergenic AluSx1|SINE|Alu -5488 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 229-422 chrX 87559448 87559629 + 2 NA intron (NM_057162, intron 1 of 10) intron (NM_057162, intron 1 of 10) 41736 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 273-241 chr2 166849904 166850055 + 2 NA Intergenic L1M1|LINE|L1 -38508 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 187-52 chr15 57822056 57822236 + 2 NA Intergenic Intergenic 115432 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 129-15 chr12 75497232 75497324 + 2 NA 3' UTR (NM_007043, exon 10 of 10) 3' UTR (NM_007043, exon 10 of 10) 14331 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 432-298 chr9 74656615 74656893 + 2 NA intron (NM_006914, intron 4 of 9) AluSx|SINE|Alu 41220 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 328-366 chr3 134118080 134118322 + 2 NA Intergenic L1PB4|LINE|L1 -60553 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 220-339 chr7 37634381 37634551 + 2 NA Intergenic L1MD1|LINE|L1 -49300 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 355-64 chr10 93732719 93733024 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -24938 NR_131777 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 252-353 chr5 162763407 162763598 + 2 NA Intergenic Intergenic -674069 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 376-257 chr3 111287514 111287818 + 2 NA Intergenic Intergenic 215850 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 264-63 chr10 111886712 111886879 + 2 NA Intergenic Intergenic 296970 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 607-13 chr1 184874179 184874571 + 2 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) 100133 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 202-49 chr12 33791665 33791808 + 2 NA Intergenic Intergenic -230760 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 139-28 chr14 62387974 62388047 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -248037 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 364-486 chrX 99624923 99625222 + 2 NA Intergenic L1MCa|LINE|L1 785201 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 587-7 chr1 101611947 101612299 + 2 NA Intergenic L1MD1|LINE|L1 234957 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 465-210 chr4 170219942 170220335 + 2 NA Intergenic L1MA4|LINE|L1 -6453 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 607-77 chr2 103255460 103255900 + 2 NA Intergenic Intergenic -271251 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 188-39 chr12 45681536 45681667 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 46320 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 239-296 chr5 4859321 4859503 + 2 NA Intergenic Intergenic 85931 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 397-313 chr7 112075214 112075594 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 130995 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 187-28 chr11 15546032 15546217 + 2 NA Intergenic L1M6|LINE|L1 -97761 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 295-203 chr2 34324758 34324989 + 2 NA Intergenic L2c|LINE|L2 257647 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 437-90 chr15 97487545 97487852 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 34113 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 333-466 chr5 102179969 102180247 + 2 NA Intergenic Intergenic 116176 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 311-351 chr3 139298748 139299018 + 2 NA Intergenic Intergenic -45111 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22 mitochondrial ribosomal protein S22 protein-coding 156-62 chr20 39412669 39412753 + 2 NA Intergenic L2b|LINE|L2 -187963 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 379-150 chr2 19530980 19531260 + 2 NA Intergenic Intergenic -172497 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 187-46 chr14 46254312 46254442 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 190218 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 341-200 chr17 74024502 74024787 + 2 NA Intergenic Intergenic -179034 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 451-157 chr3 166179011 166179346 + 2 NA Intergenic Intergenic -341755 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 366-30 chr1 214977133 214977438 + 2 NA Intergenic Intergenic -28257 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 358-465 chr8 43737515 43737715 + 2 NA Intergenic ALR/Alpha|Satellite|centr 445173 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 481-222 chr4 87972570 87973006 + 2 NA Intergenic Intergenic -2862 NM_000582 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 229-194 chr2 117222117 117222305 + 2 NA Intergenic Intergenic -592480 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 700-71 chr4 45727359 45727846 + 2 NA Intergenic MIRc|SINE|MIR 396452 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 404-199 chr21 26294368 26294651 + 2 NA Intergenic Intergenic -99126 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 405-20 chr1 225094781 225095106 + 2 NA intron (NM_001367479, intron 21 of 85) L1PA15|LINE|L1 165268 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 321-32 chr1 211726218 211726457 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 50575 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 412-2 chr1 14042596 14042893 + 2 NA Intergenic Intergenic 293329 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 418-202 chr4 182379214 182379612 + 2 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 136011 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 312-434 chr5 127301354 127301583 + 2 NA intron (NM_001308119, intron 2 of 14) intron (NM_001308119, intron 2 of 14) 10672 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 260-190 chr19 22858982 22859180 + 2 NA TTS (NM_001349726) TTS (NM_001349726) 26790 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 208-74 chr14 60429693 60429836 + 2 NA Intergenic L1MD|LINE|L1 56299 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 283-229 chr2 53069069 53069278 + 2 NA Intergenic L1ME4a|LINE|L1 -366558 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 234-155 chr2 4763300 4763468 + 2 NA Intergenic Intergenic -107162 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 476-212 chr5 31017319 31017660 + 2 NA Intergenic Intergenic -176197 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 316-550 chr8 88591578 88591844 + 2 NA Intergenic Intergenic -264228 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 340-411 chr4 99356822 99357020 + 2 NA Intergenic Intergenic -4175 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 459-207 chr4 44991621 44991944 + 2 NA Intergenic MER50-int|LTR|ERV1 -265148 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 354-179 chr18 3824044 3824365 + 2 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 21154 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 244-340 chr7 21872306 21872518 + 2 NA intron (NM_001277115, intron 73 of 81) intron (NM_001277115, intron 73 of 81) 73487 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 272-65 chr10 115452928 115453104 + 2 NA intron (NM_207303, intron 21 of 28) L1MA10|LINE|L1 359651 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 386-106 chr14 73683442 73683680 + 2 NA intron (NM_001201366, intron 6 of 8) L1MA7|LINE|L1 30823 NM_006029 9240 Hs.194709 NM_006029 ENSG00000176903 PNMA1 MA1 PNMA family member 1 protein-coding 490-187 chr3 162264103 162264506 + 2 NA Intergenic L2a|LINE|L2 767496 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 229-154 chr18 4327518 4327715 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 63014 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 351-266 chr20 55599280 55599502 + 2 NA Intergenic Intergenic -172194 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 468-221 chr4 41688499 41688873 + 2 NA intron (NM_001330983, intron 19 of 21) intron (NM_001330983, intron 19 of 21) 60284 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 495-190 chr5 10099567 10099903 + 2 NA Intergenic L1M7|LINE|L1 150153 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 296-24 chr1 232006552 232006771 + 2 NA intron (NM_001164538, intron 10 of 10) THE1C-int|LTR|ERVL-MaLR 80827 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 254-304 chr5 34774633 34774800 + 2 NA intron (NM_015577, intron 3 of 17) L1M1|LINE|L1 -64448 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 621-30 chr13 89819945 89820397 + 2 NA Intergenic Intergenic -255758 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 374-363 chr7 86424361 86424682 + 2 NA Intergenic Intergenic -219388 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 651-13 chr10 11143393 11143738 + 2 NA intron (NM_001326334, intron 2 of 13) intron (NM_001326334, intron 2 of 13) -21316 NM_001326349 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 212-259 chr5 82608937 82609109 + 2 NA Intergenic L1MA4A|LINE|L1 -231132 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 292-160 chr16 14340809 14340989 + 2 NA Intergenic L2a|LINE|L2 29367 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 279-255 chr3 54649603 54649856 + 2 NA intron (NM_018398, intron 11 of 37) MLT1A|LTR|ERVL-MaLR -9872 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 206-267 chr8 90399550 90399746 + 2 NA Intergenic L1MEd|LINE|L1 178160 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 183-109 chr4 115869453 115869611 + 2 NA Intergenic L1PB4|LINE|L1 -430193 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 272-184 chr2 56286721 56286880 + 2 NA intron (NM_001348516, intron 2 of 2) L1ME2|LINE|L1 -101030 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 359-461 chr8 29508546 29508771 + 2 NA Intergenic MIRb|SINE|MIR -157974 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 354-399 chr6 56473922 56474192 + 2 NA intron (NM_001144770, intron 84 of 94) intron (NM_001144770, intron 84 of 94) -79929 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 320-592 chr9 79416272 79416582 + 2 NA Intergenic HAL1b|LINE|L1 -155346 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 172-79 chr3 80431379 80431490 + 2 NA Intergenic L1PREC2|LINE|L1 -333463 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 1018-26 chr3 31060468 31061305 + 2 NA Intergenic L1MD2|LINE|L1 100901 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 429-104 chr15 96614829 96615194 + 2 NA Intergenic L1M5|LINE|L1 166643 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 620-130 chr7 31955628 31956017 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 114585 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 325-190 chr16 8378148 8378319 + 2 NA Intergenic Intergenic 211605 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 257-366 chr6 140511554 140511717 + 2 NA Intergenic L1MD2|LINE|L1 -172179 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 388-108 chr14 48738520 48738835 + 2 NA Intergenic Intergenic 847703 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 471-292 chrX 124711838 124712280 + 2 NA intron (NM_014253, intron 4 of 30) L1MB2|LINE|L1 251758 NM_001163278 10178 Hs.23796 NM_014253 ENSG00000009694 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1|ten-1 teneurin transmembrane protein 1 protein-coding 610-14 chr10 4534000 4534551 + 2 NA Intergenic Intergenic -121881 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 307-23 chr1 157620071 157620320 + 2 NA Intergenic L1M4|LINE|L1 -22110 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 191-149 chr4 60274473 60274607 + 2 NA Intergenic L1MA9|LINE|L1 -648079 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 416-247 chr4 62829054 62829395 + 2 NA Intergenic L1MD2|LINE|L1 -667459 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 269-363 chr6 143326119 143326283 + 2 NA intron (NM_016108, intron 4 of 5) intron (NM_016108, intron 4 of 5) 116476 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 324-537 chr8 101023749 101023936 + 2 NA Intergenic Intergenic -28212 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 174-100 chr4 7580049 7580159 + 2 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) 120076 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 387-60 chr11 55079346 55079720 + 2 NA Intergenic ALR/Alpha|Satellite|centr -182622 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 159-26 chr13 43391511 43391635 + 2 NA intron (NM_001347966, intron 6 of 17) L2c|LINE|L2 -57279 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 337-362 chr3 112195089 112195372 + 2 NA intron (NM_001320531, intron 19 of 27).2 L1M4|LINE|L1 61807 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 265-405 chr8 135695297 135695493 + 2 NA Intergenic Intergenic 237939 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 185-128 chr22 27210460 27210574 + 2 NA Intergenic Intergenic 14162 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 428-208 chr4 61842329 61842715 + 2 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 319243 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 265-366 chr7 96784093 96784240 + 2 NA Intergenic Intergenic -74275 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 304-423 chr5 89225260 89225514 + 2 NA intron (NR_136219, intron 7 of 9) L1MB7|LINE|L1 -321282 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 525-281 chr9 73819749 73820125 + 2 NA Intergenic MIRb|SINE|MIR -551594 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 375-426 chr8 135929158 135929399 + 2 NA Intergenic LTR82A|LTR|ERVL 471822 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 288-48 chr10 51395892 51396065 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 96405 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 402-19 chr1 217415839 217416173 + 2 NA Intergenic Intergenic 215084 NM_001297754 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 762-45 chr3 139467666 139468258 + 2 NA intron (NM_004164, intron 1 of 3) intron (NM_004164, intron 1 of 3) 8554 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 317-376 chr5 16248668 16248855 + 2 NA Intergenic Intergenic 68520 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 492-288 chrX 64241433 64241752 + 2 NA Intergenic L1MA6|LINE|L1 -10985 NM_130388 142689 Hs.56281 NM_130388 ENSG00000198881 ASB12 - ankyrin repeat and SOCS box containing 12 protein-coding 775-47 chr2 114370075 114370658 + 2 NA Intergenic L2|LINE|L2 -72275 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 340-30 chr1 216033105 216033348 + 2 NA intron (NM_206933, intron 32 of 71) MLT1J1|LTR|ERVL-MaLR -39239 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 337-98 chr11 97550631 97550896 + 2 NA Intergenic L1M5|LINE|L1 1042338 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 316-252 chr2 19519403 19519623 + 2 NA Intergenic Intergenic -160890 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 399-316 chr8 135429746 135430099 + 2 NA Intergenic Intergenic -27534 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 423-22 chr10 20027239 20027570 + 2 NA intron (NM_001282736, intron 2 of 12) MSTD|LTR|ERVL-MaLR 210972 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 357-33 chr10 52882123 52882429 + 2 NA Intergenic Intergenic -110576 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 441-98 chr18 528489 528719 + 2 NA Intergenic AluSp|SINE|Alu -13310 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 385-291 chr5 27079889 27080235 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -41476 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 331-443 chr5 158707123 158707368 + 2 NA intron (NM_001324107, intron 15 of 15) intron (NM_001324107, intron 15 of 15) -297472 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 321-451 chr5 13878830 13879079 + 2 NA intron (NM_001369, intron 21 of 78) L1M3de|LINE|L1 65526 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 349-98 chr11 70635828 70636016 + 2 NA TTS (NR_046567) TTS (NR_046567) 4828 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 212-336 chr8 135708059 135708186 + 2 NA Intergenic L1M2|LINE|L1 250666 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 184-114 chr3 84521513 84521647 + 2 NA Intergenic LTR16A|LTR|ERVL 347995 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 354-258 chr20 22944754 22945004 + 2 NA Intergenic Intergenic -90541 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 351-151 chr15 98349435 98349661 + 2 NA intron (NR_146567, intron 1 of 2) intron (NR_146567, intron 1 of 2) -17990 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 175-12 chr1 153051522 153051643 + 2 NA Intergenic L1PA11|LINE|L1 5930 NM_005988 6700 Hs.355542 NM_005988 ENSG00000241794 SPRR2A - small proline rich protein 2A protein-coding 353-338 chr3 121034636 121034850 + 2 NA intron (NR_145517, intron 3 of 8) L1PB4|LINE|L1 -14897 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 203-214 chr7 15685051 15685224 + 2 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) 1546 NM_005924 4223 Hs.170355 NM_005924 ENSG00000106511 MEOX2 GAX|MOX2 mesenchyme homeobox 2 protein-coding 260-36 chr10 12165475 12165712 + 2 NA TTS (NM_001142628) TTS (NM_001142628) 30298 NM_014142 11164 Hs.555956 NM_014142 ENSG00000165609 NUDT5 YSA1|YSA1H|YSAH1|hNUDT5 nudix hydrolase 5 protein-coding 281-403 chr7 1682953 1683177 + 2 NA Intergenic L1MB8|LINE|L1 -5054 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 299-310 chr4 21740585 21740771 + 2 NA intron (NM_147182, intron 2 of 8) MIRb|SINE|MIR -42983 NM_001035003 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 325-416 chr4 175748709 175748874 + 2 NA intron (NM_201592, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 38885 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 253-384 chr7 47581409 47581587 + 2 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 613 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 294-196 chr2 18713687 18713875 + 2 NA Intergenic L1MDa|LINE|L1 -124201 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 146-48 chr20 14781233 14781338 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 148233 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 265-192 chr2 117277955 117278141 + 2 NA Intergenic L1MC4|LINE|L1 -536643 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 243-400 chr6 144938433 144938607 + 2 NA Intergenic L2a|LINE|L2 532865 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 243-42 chr10 58522248 58522446 + 2 NA intron (NM_001080512, intron 1 of 20) L1PA4|LINE|L1 9475 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 598-95 chr3 195188170 195188618 + 2 NA intron (NM_152531, intron 2 of 3) MER66A|LTR|ERV1 40523 NR_102711 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 438-115 chr2 48135824 48136164 + 2 NA Intergenic HAL1|LINE|L1 -178688 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 451-48 chr12 93720428 93720747 + 2 NA intron (NR_110093, intron 2 of 2) L1MC1|LINE|L1 17236 NR_110092 101928731 Hs.659971 NR_110092 ENSG00000258274 LOC101928731 - uncharacterized LOC101928731 ncRNA 333-307 chr20 28814807 28815128 + 2 NA Intergenic ALR/Alpha|Satellite|centr -212302 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 463-55 chr11 40596915 40597236 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -303945 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 441-183 chr4 81267596 81267937 + 2 NA Intergenic L1MA5|LINE|L1 -52544 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 182-100 chr20 18955293 18955396 + 2 NA Intergenic Intergenic -125141 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 269-386 chr7 71759433 71759617 + 2 NA Intergenic L1MA9|LINE|L1 -451755 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 394-282 chr5 148602094 148602371 + 2 NA intron (NM_001040172, intron 1 of 5) L1MA10|LINE|L1 34829 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 323-155 chr14 86997186 86997378 + 2 NA Intergenic L1MC1|LINE|L1 91504 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 233-325 chr6 19302467 19302633 + 2 NA Intergenic Intergenic -122070 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 959-11 chr14 80121776 80122464 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -89299 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 203-252 chr9 99457833 99457972 + 2 NA Intergenic L1MC5|LINE|L1 -82645 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 320-30 chr1 177868101 177868271 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 101736 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 227-174 chr2 99841337 99841534 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 264148 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 348-139 chr14 62208217 62208405 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -68338 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 401-28 chr10 49556038 49556406 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -16684 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 307-248 chr2 123902593 123902792 + 2 NA Intergenic Intergenic 122482 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 687-83 chr4 23962636 23962979 + 2 NA intron (NM_001330752, intron 2 of 13) intron (NM_001330752, intron 2 of 13) -72760 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 756-18 chr17 54493484 54493951 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -406974 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 332-147 chr13 110082731 110082956 + 2 NA Intergenic L1MEd|LINE|L1 29558 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 191-213 chr8 89581135 89581291 + 2 NA Intergenic Intergenic 176498 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 393-103 chr14 68311962 68312297 + 2 NA intron (NM_133509, intron 8 of 10) (TGTTT)n|Simple_repeat|Simple_repeat 316658 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 188-199 chr8 3422822 3422984 + 2 NA intron (NM_033225, intron 12 of 69) MLT1A1|LTR|ERVL-MaLR -694452 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 592-11 chr10 24176485 24176811 + 2 NA intron (NM_001098500, intron 2 of 18) LTR12C|LTR|ERV1 -32143 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 490-13 chr1 88443728 88444063 + 2 NA Intergenic Intergenic -240249 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 357-143 chr16 50817747 50817944 + 2 NA Intergenic AluSx|SINE|Alu 11173 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 320-111 chr12 14680314 14680505 + 2 NA intron (NM_004963, intron 5 of 26) intron (NM_004963, intron 5 of 26) 16190 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 301-432 chr8 3836737 3837020 + 2 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) -1108427 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 363-467 chr9 22609255 22609584 + 2 NA Intergenic Intergenic -36781 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 324-167 chr14 81792371 81792580 + 2 NA Intergenic L3|LINE|CR1 -49337 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 290-116 chr13 20028017 20028284 + 2 NA intron (NM_197968, intron 9 of 24) intron (NM_197968, intron 9 of 24) 68336 NR_148365 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 311-39 chr1 247173552 247173828 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -1673 NM_001297567 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 323-486 chr7 32374286 32374470 + 2 NA intron (NM_001322059, intron 1 of 17) MLT1G|LTR|ERVL-MaLR 53846 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 395-206 chr21 30302303 30302624 + 2 NA Intergenic Intergenic -12949 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 283-163 chr16 61840845 61841046 + 2 NA intron (NM_001796, intron 4 of 11) intron (NM_001796, intron 4 of 11) 195493 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 430-113 chr17 67653842 67654227 + 2 NA intron (NM_181671, intron 6 of 9) intron (NM_181671, intron 6 of 9) -63799 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 300-50 chr10 82337761 82337937 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -104929 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 182-26 chr11 46839115 46839244 + 2 NA intron (NM_001008938, intron 1 of 43) L2a|LINE|L2 7101 NM_001008938 9793 Hs.201253 NM_014756 ENSG00000175216 CKAP5 CHTOG|MSPS|TOG|TOGp|ch-TOG cytoskeleton associated protein 5 protein-coding 302-175 chr17 71918554 71918730 + 2 NA Intergenic Intergenic 107337 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 453-13 chr1 174668627 174668981 + 2 NA intron (NM_001366446, intron 14 of 25) L1MA8|LINE|L1 -31735 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 507-22 chr1 232765528 232765978 + 2 NA Intergenic Intergenic -23038 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 122-6 chr11 11746263 11746380 + 2 NA Intergenic L1MEg|LINE|L1 36901 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 224-355 chr9 123368650 123368841 + 2 NA promoter-TSS (NR_104603) promoter-TSS (NR_104603) -34 NR_104603 286204 Hs.568340 NM_173689 ENSG00000148204 CRB2 FSGS9|VMCKD crumbs cell polarity complex component 2 protein-coding 491-90 chr17 56496652 56497107 + 2 NA intron (NM_001370326, intron 19 of 20) intron (NM_001370326, intron 19 of 20) -96820 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 264-245 chr20 56927405 56927590 + 2 NA Intergenic Intergenic -286199 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 276-209 chr19 39658495 39658699 + 2 NA exon (NM_001190441, exon 3 of 4) exon (NM_001190441, exon 3 of 4) 2684 NM_001190441 148003 Hs.667238 NM_001190441 ENSG00000249861 LGALS16 - galectin 16 protein-coding 189-19 chr10 72801136 72801310 + 2 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 80194 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 616-165 chr7 113181809 113182272 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -63458 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 281-345 chr5 8672078 8672258 + 2 NA Intergenic Intergenic -167564 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 853-22 chr22 44376230 44376803 + 2 NA Intergenic L1MEg|LINE|L1 -63565 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 288-458 chr8 134850876 134851029 + 2 NA non-coding (NR_125427, exon 1 of 3) non-coding (NR_125427, exon 1 of 3) 1017 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 664-34 chr12 48294102 48294562 + 2 NA Intergenic Intergenic -34648 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 260-234 chr2 234659174 234659359 + 2 NA Intergenic L1MCa|LINE|L1 -23402 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 231-312 chr6 124213448 124213609 + 2 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -69477 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 227-26 chr1 239779018 239779165 + 2 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -59972 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 315-388 chr5 92467805 92468011 + 2 NA Intergenic Intergenic -1084591 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 752-49 chr3 1538443 1538872 + 2 NA Intergenic Intergenic 445633 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 253-333 chr5 85470270 85470440 + 2 NA Intergenic L1MCa|LINE|L1 -812089 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 302-232 chr2 159971546 159971716 + 2 NA intron (NM_001007267, intron 17 of 26) (GT)n|Simple_repeat|Simple_repeat -66875 NM_002349 4065 Hs.153563 NM_002349 ENSG00000054219 LY75 CD205|CLEC13B|DEC-205|GP200-MR6|LY-75 lymphocyte antigen 75 protein-coding 219-117 chr15 81786128 81786288 + 2 NA Intergenic L1ME3A|LINE|L1 259810 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 226-59 chr11 102551063 102551241 + 2 NA Intergenic Intergenic -20405 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 432-19 chr1 210817257 210817643 + 2 NA intron (NM_002238, intron 7 of 10) MIR|SINE|MIR 315924 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 392-364 chrX 105869801 105870115 + 2 NA intron (NM_198465, intron 2 of 28) intron (NM_198465, intron 2 of 28) 47419 NM_198465 203447 Hs.209527 NM_198465 ENSG00000123572 NRK NESK Nik related kinase protein-coding 492-120 chr19 57600626 57600974 + 2 NA intron (NR_135924, intron 2 of 3) intron (NR_135924, intron 2 of 3) 915 NR_135924 348327 Hs.97111 NM_020880 ENSG00000183647 ZNF530 - zinc finger protein 530 protein-coding 463-47 chr10 125944741 125945081 + 2 NA intron (NM_001363549, intron 1 of 10) MER9a1|LTR|ERVK 28362 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 253-140 chr15 56588138 56588301 + 2 NA Intergenic LTR8|LTR|ERV1 -123082 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 214-134 chr17 81858997 81859186 + 2 NA intron (NM_000918, intron 2 of 10) intron (NM_000918, intron 2 of 10) 1444 NM_000918 5034 Hs.464336 NM_000918 ENSG00000185624 P4HB CLCRP1|DSI|ERBA2L|GIT|P4Hbeta|PDI|PDIA1|PHDB|PO4DB|PO4HB|PROHB prolyl 4-hydroxylase subunit beta protein-coding 141-15 chr11 2223635 2223713 + 2 NA Intergenic L1MCa|LINE|L1 47278 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 356-255 chr2 113064606 113064897 + 2 NA TTS (NM_012275) TTS (NM_012275) -3219 NM_173161 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 328-537 chr7 57446091 57446370 + 2 NA Intergenic MER41-int|LTR|ERV1 -3947 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 220-204 chr20 47955037 47955153 + 2 NA Intergenic Intergenic -28131 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 358-237 chr2 161487786 161487992 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 20013 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 383-135 chr15 101832359 101832637 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -9621 NR_046417 390651 Hs.578689 NR_046417 ENSG00000214344 OR4F13P GPCRLTM7 olfactory receptor family 4 subfamily F member 13 pseudogene pseudo 237-261 chr4 32383186 32383382 + 2 NA Intergenic Intergenic 32246 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 209-297 chr7 46676503 46676673 + 2 NA Intergenic Intergenic 20534 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 260-209 chr2 75441752 75442004 + 2 NA Intergenic MER96|DNA|hAT-Tip100 -82190 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 174-28 chr12 16524858 16524972 + 2 NA Intergenic Intergenic 80464 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 773-26 chr3 177317332 177317895 + 2 NA intron (NR_047465, intron 1 of 1) MSTD|LTR|ERVL-MaLR 23171 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 325-331 chr22 49050021 49050317 + 2 NA Intergenic Intergenic 183399 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 173-51 chr16 76729150 76729279 + 2 NA Intergenic Intergenic 94216 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 277-115 chr14 59080146 59080310 + 2 NA Intergenic L1MC5a|LINE|L1 -108439 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 369-2 chr1 36852942 36853232 + 2 NA intron (NM_000831, intron 8 of 15) L3|LINE|CR1 181428 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 572-111 chr3 107180099 107180514 + 2 NA intron (NR_028303, intron 1 of 3) L1MB7|LINE|L1 60332 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 769-10 chr12 4975396 4975964 + 2 NA Intergenic Intergenic 65775 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 397-160 chr2 97952580 97952939 + 2 NA intron (NM_015348, intron 1 of 40) AluJb|SINE|Alu 43189 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 367-355 chr5 44294056 44294416 + 2 NA Intergenic LTR86A2|LTR|ERVL -94496 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 150-79 chr4 64234543 64234623 + 2 NA Intergenic Intergenic 174867 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 298-469 chr8 118986893 118987175 + 2 NA intron (NM_001324095, intron 1 of 7) L1MB5|LINE|L1 34771 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 283-93 chr12 13716215 13716459 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 264019 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 154-96 chr6 131745508 131745653 + 2 NA intron (NR_133007, intron 23 of 23) intron (NR_133007, intron 23 of 23) -34563 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 245-206 chr2 170160707 170160841 + 2 NA Intergenic Intergenic -17373 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 356-473 chr8 79659810 79660006 + 2 NA intron (NM_007029, intron 4 of 4) Tigger13a|DNA|TcMar-Tigger 48791 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 376-252 chr3 96833516 96833731 + 2 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 19029 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 338-99 chr11 58037018 58037289 + 2 NA intron (NM_001005212, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 6200 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 299-357 chr5 26183801 26184033 + 2 NA Intergenic Intergenic 854669 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 208-87 chr16 63552895 63553081 + 2 NA Intergenic L2|LINE|L2 -1516550 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 221-158 chr2 217468514 217468712 + 2 NA intron (NR_026597, intron 3 of 12) intron (NR_026597, intron 3 of 12) 185880 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 440-173 chr3 196230964 196231278 + 2 NA intron (NM_152672, intron 7 of 8) MIRb|SINE|MIR 14587 NM_152672 200931 Hs.630585 NM_152672 ENSG00000163959 SLC51A OSTA|OSTalpha solute carrier family 51 alpha subunit protein-coding 543-11 chr1 109291822 109292332 + 2 NA TTS (NM_001010985) TTS (NM_001010985) -8909 NM_001350238 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 388-240 chr3 175684051 175684282 + 2 NA intron (NM_207015, intron 11 of 13) (CAATAA)n|Simple_repeat|Simple_repeat 92167 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 482-280 chr8 122661708 122662043 + 2 NA Intergenic L2a|LINE|L2 32231 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 137-44 chr2 77483154 77483246 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 39176 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 219-359 chr8 107511927 107512120 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -14105 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 277-203 chr2 102311203 102311437 + 2 NA promoter-TSS (NM_016232) promoter-TSS (NM_016232) -182 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 421-129 chr2 22287725 22288025 + 2 NA Intergenic Intergenic -248604 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 539-28 chr10 64205240 64205658 + 2 NA Intergenic Intergenic -620079 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 391-274 chr5 3334679 3334911 + 2 NA Intergenic Intergenic -118021 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 693-75 chr4 157690534 157691164 + 2 NA Intergenic L1ME3Cz|LINE|L1 118359 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 243-369 chr5 122751110 122751317 + 2 NA Intergenic LTR16E2|LTR|ERVL -20653 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 265-140 chr17 47760344 47760546 + 2 NA Intergenic L1M4|LINE|L1 27209 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 333-610 chr9 108707932 108708219 + 2 NA Intergenic Intergenic 147911 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 562-224 chr8 139361328 139361845 + 2 NA Intergenic Intergenic 341537 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 347-453 chr7 11929624 11929886 + 2 NA Intergenic Intergenic -97557 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 507-243 chr8 49794665 49795044 + 2 NA Intergenic Intergenic -114942 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 119-42 chr22 35188487 35188549 + 2 NA intron (NR_126356, intron 2 of 5) (AT)n|Simple_repeat|Simple_repeat 42538 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 272-441 chr8 56882316 56882516 + 2 NA Intergenic Intergenic 111451 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 343-493 chr7 4417369 4417591 + 2 NA Intergenic Intergenic -264815 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 284-79 chr12 2564069 2564252 + 2 NA intron (NM_199460, intron 11 of 49).2 MER112|DNA|hAT-Charlie 108060 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 235-85 chr12 80503547 80503696 + 2 NA intron (NM_001145026, intron 14 of 44) intron (NM_001145026, intron 14 of 44) 59386 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 154-68 chr3 58317124 58317250 + 2 NA intron (NM_001098783, intron 5 of 5) intron (NM_001098783, intron 5 of 5) 10942 NM_001348714 109703458 Hs.446320 NM_001348712 ENSG00000255154 HTD2 - hydroxyacyl-thioester dehydratase type 2 protein-coding 370-384 chr5 180407378 180407686 + 2 NA Intergenic L1MA4|LINE|L1 -54196 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 200-126 chr2 52689675 52689842 + 2 NA Intergenic Intergenic 12857 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 410-97 chr15 58538059 58538407 + 2 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -39498 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 234-324 chr5 148167772 148167973 + 2 NA promoter-TSS (NM_001001325) promoter-TSS (NM_001001325) -674 NM_001001325 408187 Hs.553815 NM_001001325 ENSG00000196800 SPINK14 SPINK5L2 serine peptidase inhibitor, Kazal type 14 (putative) protein-coding 281-459 chr9 85022033 85022231 + 2 NA 3' UTR (NM_001369533, exon 18 of 18) 3' UTR (NM_001369533, exon 18 of 18) 316231 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 200-97 chr16 60645030 60645185 + 2 NA Intergenic Intergenic -285314 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 534-253 chr8 68885474 68885861 + 2 NA Intergenic L1ME1|LINE|L1 218523 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 234-192 chr2 158269595 158269794 + 2 NA intron (NM_138803, intron 9 of 13) LTR16E2|LTR|ERVL 103044 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 239-271 chr4 35695032 35695187 + 2 NA Intergenic MER53|DNA|hAT 548830 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 351-268 chr20 61493622 61493835 + 2 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -5693 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 435-177 chr4 159923944 159924311 + 2 NA Intergenic Intergenic -146343 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 394-171 chr2 66662478 66662698 + 2 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 40639 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 357-289 chr3 157208644 157208993 + 2 NA Intergenic Intergenic -48058 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 517-110 chr18 55964407 55964740 + 2 NA Intergenic Intergenic -44374 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 265-151 chr18 34949555 34949752 + 2 NA Intergenic Intergenic -27275 NM_001143826 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 350-74 chr11 55012938 55013226 + 2 NA Intergenic ALR/Alpha|Satellite|centr -249073 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 236-342 chr8 16569613 16569768 + 2 NA Intergenic Intergenic -376899 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 353-327 chr3 76633543 76633791 + 2 NA Intergenic Intergenic -406432 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 292-261 chr21 21217240 21217400 + 2 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 70158 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 140-12 chr11 23881460 23881578 + 2 NA Intergenic Intergenic -462329 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 359-186 chr17 65654940 65655271 + 2 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -93457 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 262-259 chr21 23252508 23252692 + 2 NA Intergenic Intergenic 132235 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 316-229 chr18 71040162 71040444 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -389349 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 214-286 chr6 125414357 125414505 + 2 NA Intergenic Intergenic -112464 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 293-77 chr12 4660780 4661023 + 2 NA intron (NM_005002, intron 5 of 10) L2a|LINE|L2 11787 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 374-338 chr6 64495785 64496015 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 689064 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 459-60 chr12 4927805 4928132 + 2 NA Intergenic Intergenic 18063 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 552-32 chr11 54976920 54977354 + 2 NA Intergenic ALR/Alpha|Satellite|centr 270305 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 340-27 chr1 182001406 182001705 + 2 NA Intergenic L1ME3A|LINE|L1 60157 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 326-221 chr19 44614615 44614793 + 2 NA intron (NM_001205280, intron 1 of 4) AluJo|SINE|Alu 1141 NM_001205280 147710 Hs.512509 NM_001205280 ENSG00000216588 IGSF23 - immunoglobulin superfamily member 23 protein-coding 329-457 chr5 45616234 45616484 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 80021 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 268-333 chr6 16176113 16176307 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 34654 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 505-2 chr1 42548798 42549197 + 2 NA intron (NM_001355227, intron 9 of 18) L2a|LINE|L2 15977 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 417-6 chr1 60639215 60639445 + 2 NA Intergenic L1M5|LINE|L1 -16645 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 119-22 chr16 77718693 77718774 + 2 NA Intergenic SATR2|Satellite|Satellite -3759 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 172-34 chr14 45571061 45571220 + 2 NA Intergenic Intergenic 144462 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 276-86 chr11 81058355 81058510 + 2 NA Intergenic L2a|LINE|L2 -295629 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 236-173 chr2 77999224 77999379 + 2 NA intron (NR_110288, intron 1 of 3) L1ME2|LINE|L1 -44275 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 336-474 chr5 169239915 169240212 + 2 NA intron (NM_003062, intron 3 of 35) L1MC3|LINE|L1 23631 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 199-193 chr5 1865791 1865967 + 2 NA Intergenic Intergenic -9311 NR_104602 101929034 Hs.128032 NR_104602 ENSG00000250417 LINC02116 - long intergenic non-protein coding RNA 2116 ncRNA 296-146 chr14 80177205 80177435 + 2 NA Intergenic Intergenic -34099 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 291-20 chr1 150002698 150002911 + 2 NA intron (NM_020205, intron 1 of 11) intron (NM_020205, intron 1 of 11) 7922 NM_020205 56957 Hs.98322 NM_020205 ENSG00000264522 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 267-322 chr5 23050444 23050601 + 2 NA Intergenic Intergenic -197178 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 177-169 chr9 79504636 79504755 + 2 NA Intergenic Intergenic -67078 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 517-252 chr7 77451764 77452091 + 2 NA Intergenic L1MB8|LINE|L1 -35578 NM_001350899 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 286-288 chr3 98262895 98263076 + 2 NA Intergenic Intergenic -1259 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 255-471 chrX 151572268 151572449 + 2 NA intron (NM_173493, intron 1 of 15) intron (NM_173493, intron 1 of 15) 8683 NM_173493 139135 Hs.160594 NM_173493 ENSG00000166049 PASD1 CT63|CT64|OXTES1 PAS domain containing repressor 1 protein-coding 298-368 chr5 67886618 67886819 + 2 NA Intergenic MamGypsy2-LTR|LTR|Gypsy 93505 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 303-245 chr20 15175664 15175857 + 2 NA intron (NM_001351663, intron 5 of 17) MER52A|LTR|ERV1 -21080 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 350-309 chr3 56901639 56901943 + 2 NA intron (NM_001128615, intron 3 of 12) AluJr|SINE|Alu 14645 NM_001289698 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 339-323 chr20 54798113 54798379 + 2 NA Intergenic L1PA10|LINE|L1 322653 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 337-119 chr12 68255123 68255335 + 2 NA Intergenic L1MA8|LINE|L1 -1625 NM_020525 50616 Hs.287369 NM_020525 ENSG00000127318 IL22 IL-21|IL-22|IL-D110|IL-TIF|ILTIF|TIFIL-23|TIFa|zcyto18 interleukin 22 protein-coding 404-113 chr15 55734351 55734730 + 2 NA intron (NM_173814, intron 2 of 19) intron (NM_173814, intron 2 of 19) 8612 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 292-325 chr4 139832910 139833133 + 2 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 167202 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 216-64 chr11 99493207 99493419 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -62832 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 359-453 chr7 51918937 51919147 + 2 NA Intergenic Intergenic -525786 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 289-328 chr4 373969 374151 + 2 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 23903 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 300-445 chr7 156142734 156142919 + 2 NA Intergenic Intergenic 180194 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 469-197 chr4 60747051 60747419 + 2 NA Intergenic Intergenic -175384 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 606-176 chr9 114959934 114960357 + 2 NA Intergenic Intergenic -29550 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 289-488 chr9 34942013 34942264 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -15349 NM_001304333 23349 Hs.7989 NM_015297 ENSG00000122733 PHF24 - PHD finger protein 24 protein-coding 485-82 chr14 81829056 81829344 + 2 NA Intergenic LTR12C|LTR|ERV1 -86062 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 250-131 chr15 26238178 26238340 + 2 NA Intergenic Intergenic 122446 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 402-174 chr2 167996372 167996727 + 2 NA intron (NM_013233, intron 16 of 17) intron (NM_013233, intron 16 of 17) -55405 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 335-504 chr7 53173237 53173562 + 2 NA Intergenic Intergenic 137766 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 331-142 chr13 101871767 101871953 + 2 NA intron (NM_001321939, intron 1 of 3) intron (NM_001321939, intron 1 of 3) 44785 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 330-267 chr2 72044613 72044834 + 2 NA Intergenic L1MB3|LINE|L1 103139 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 262-201 chr2 57511534 57511714 + 2 NA Intergenic Intergenic -396027 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 891-2 chr11 55045631 55046276 + 2 NA Intergenic ALR/Alpha|Satellite|centr -216202 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 398-62 chr11 105355320 105355658 + 2 NA Intergenic Intergenic -215720 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 320-379 chr4 31869389 31869589 + 2 NA Intergenic Intergenic -127890 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 211-114 chr17 70974922 70975103 + 2 NA Intergenic Intergenic 227167 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 278-335 chr5 51263102 51263308 + 2 NA Intergenic L1MA10|LINE|L1 120127 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 469-104 chr16 68826250 68826570 + 2 NA intron (NM_001317185, intron 13 of 15) FLAM_C|SINE|Alu -17121 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 381-261 chr3 185710218 185710563 + 2 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) -2862 NR_126326 646600 Hs.647949 NR_027317 ENSG00000163915 IGF2BP2-AS1 C3orf65 IGF2BP2 antisense RNA 1 ncRNA 238-159 chr2 14747679 14747843 + 2 NA Intergenic Intergenic 115044 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 380-317 chr5 128637791 128638106 + 2 NA Intergenic Intergenic -99703 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 294-303 chr3 98085349 98085569 + 2 NA Intergenic L1ME3G|LINE|L1 -1714 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 242-129 chr16 68570453 68570607 + 2 NA intron (NM_001305204, intron 4 of 4) MER66C|LTR|ERV1 31239 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 421-144 chr2 105677744 105678052 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -67014 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 386-305 chr5 160923123 160923401 + 2 NA Intergenic Intergenic 15364 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 278-83 chr12 127941010 127941273 + 2 NA intron (NR_126452, intron 2 of 3) L1MB8|LINE|L1 25731 NR_046392 100862680 Hs.385496 NR_046392 ENSG00000256193 LINC00507 - long intergenic non-protein coding RNA 507 ncRNA 208-283 chr9 35462358 35462542 + 2 NA intron (NR_003581, intron 11 of 17) L1M1|LINE|L1 -27661 NM_014806 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 543-77 chr14 66175047 66175455 + 2 NA Intergenic Intergenic -311120 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 317-329 chr3 192069569 192069819 + 2 NA Intergenic L1MC4a|LINE|L1 -168936 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 341-45 chr1 218862464 218862802 + 2 NA intron (NR_031644, intron 6 of 6) MER115|DNA|hAT-Tip100 55878 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 359-253 chr2 166956873 166957173 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 68536 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 162-127 chr8 46170889 46171018 + 2 NA Intergenic ALR/Alpha|Satellite|centr 446690 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 222-182 chr2 114508878 114509061 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 47392 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 261-364 chr7 103359585 103359773 + 2 NA intron (NM_001204453, intron 4 of 4) L1MB7|LINE|L1 12036 NM_002803 5701 Hs.437366 NM_002803 ENSG00000161057 PSMC2 MSS1|Nbla10058|S7 proteasome 26S subunit, ATPase 2 protein-coding 176-125 chr6 163160412 163160545 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 31524 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 253-91 chr12 8979354 8979510 + 2 NA intron (NR_137427, intron 1 of 2) L1M3c|LINE|L1 -10114 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 395-69 chr12 44293543 44293800 + 2 NA intron (NM_001286213, intron 4 of 6) L1MA9|LINE|L1 457590 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 289-481 chr9 3049960 3050131 + 2 NA Intergenic L1ME2z|LINE|L1 -131544 NR_121585 101929247 Hs.547178 NR_121585 LINC01231 - long intergenic non-protein coding RNA 1231 ncRNA 225-144 chr2 11899659 11899830 + 2 NA Intergenic Intergenic -62758 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 292-191 chr19 14737513 14737705 + 2 NA intron (NM_013447, intron 20 of 20) intron (NM_013447, intron 20 of 20) 39318 NM_001271052 30817 Hs.531619 NM_013447 ENSG00000127507 ADGRE2 CD312|CD97|EMR2|VBU adhesion G protein-coupled receptor E2 protein-coding 452-33 chr10 67058682 67058956 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 46553 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 713-81 chr9 101971235 101971730 + 2 NA Intergenic L1MA1|LINE|L1 -232902 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 296-121 chr13 76341902 76342152 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -406895 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 120-43 chr6 9201072 9201156 + 2 NA Intergenic Intergenic 548905 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 565-83 chr2 108131451 108131877 + 2 NA Intergenic Intergenic -78909 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 309-140 chr14 33605680 33605921 + 2 NA intron (NM_001165893, intron 4 of 10) L1ME1|LINE|L1 -103137 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 205-198 chr4 37742948 37743102 + 2 NA Intergenic Intergenic -56649 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 170-105 chr4 43988204 43988293 + 2 NA Intergenic L1MEc|LINE|L1 -28613 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 300-284 chr3 102614671 102614927 + 2 NA Intergenic Intergenic 179784 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 369-4 chr1 52170637 52170861 + 2 NA intron (NM_007324, intron 1 of 17) L1M1|LINE|L1 28655 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 526-257 chr9 24136843 24137302 + 2 NA Intergenic Intergenic -286471 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 262-453 chr9 80289531 80289717 + 2 NA Intergenic L2a|LINE|L2 314601 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 333-438 chr5 30523896 30524217 + 2 NA Intergenic L3b|LINE|CR1 643496 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 206-249 chr7 33426206 33426383 + 2 NA intron (NM_001348037, intron 18 of 20) MIRb|SINE|MIR 296730 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 270-261 chr4 45195735 45195924 + 2 NA Intergenic Intergenic -469195 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 342-215 chr2 347694 347930 + 2 NA Intergenic Intergenic 31528 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 362-316 chr4 89987887 89988133 + 2 NA Intergenic Intergenic 93156 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 629-32 chr12 65420856 65421313 + 2 NA intron (NM_001031679, intron 5 of 6) L1PREC2|LINE|L1 136227 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 217-324 chr6 62568478 62568681 + 2 NA Intergenic Intergenic -282352 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 257-56 chr11 6326994 6327191 + 2 NA Intergenic Intergenic -6591 NM_145040 112464 Hs.434044 NM_145040 ENSG00000170955 CAVIN3 HSRBC|PRKCDBP|SRBC|cavin-3 caveolae associated protein 3 protein-coding 1132-7 chr20 46055621 46056251 + 2 NA intron (NM_020708, intron 21 of 25) MamRep38|DNA|hAT 26721 NM_020708 57468 Hs.21413 NM_020708 ENSG00000124140 SLC12A5 EIEE34|EIG14|KCC2|hKCC2 solute carrier family 12 member 5 protein-coding 229-187 chr2 88270441 88270625 + 2 NA Intergenic Intergenic 97394 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 230-348 chr7 47635761 47635923 + 2 NA Intergenic Intergenic 13903 NR_108090 101929086 Hs.563487 NR_108090 ENSG00000236078 LINC01447 - long intergenic non-protein coding RNA 1447 ncRNA 316-174 chr14 67173642 67173851 + 2 NA intron (NM_001024218, intron 20 of 21) L1M2a|LINE|L1 -15694 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 247-328 chr5 66578256 66578489 + 2 NA Intergenic Intergenic -18021 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 294-245 chr2 192052150 192052411 + 2 NA intron (NM_001305134, intron 5 of 9) intron (NM_001305134, intron 5 of 9) 142653 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 290-52 chr10 66976644 66976831 + 2 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 35416 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 375-60 chr10 107149213 107149540 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 15330 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 320-601 chr9 135026114 135026385 + 2 NA Intergenic L1MD|LINE|L1 -49256 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 262-304 chr4 33310736 33310926 + 2 NA Intergenic Intergenic 729062 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 446-336 chrX 149153037 149153398 + 2 NA Intergenic L1MEc|LINE|L1 352089 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 576-170 chr8 107156612 107157036 + 2 NA Intergenic Intergenic 179691 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 206-34 chr10 82444848 82445039 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -212023 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 239-134 chr17 71214616 71214841 + 2 NA Intergenic L1MA8|LINE|L1 -12549 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 160-11 chr10 10909980 10910110 + 2 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 42118 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 484-70 chr14 98565494 98565838 + 2 NA Intergenic Intergenic -145947 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 477-126 chr18 59035824 59036143 + 2 NA intron (NR_024021, intron 1 of 4) intron (NR_024021, intron 1 of 4) 304 NR_024021 390858 Hs.716280 NR_024021 OACYLP ACYL3P O-acyltransferase like, pseudogene pseudo 387-229 chr3 96012765 96013132 + 2 NA Intergenic Intergenic -329755 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 334-304 chr2 238111687 238111881 + 2 NA intron (NM_194312, intron 4 of 8) L1MB2|LINE|L1 11444 NM_194312 339768 Hs.127724 NM_194312 ENSG00000144488 ESPNL - espin like protein-coding 310-557 chr9 93948066 93948267 + 2 NA Intergenic Intergenic 7189 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 416-160 chr2 24546724 24546953 + 2 NA intron (NM_001362952, intron 1 of 23) MLT1H1|LTR|ERVL-MaLR -37639 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 422-128 chr18 65553367 65553703 + 2 NA Intergenic L1MD1|LINE|L1 -196717 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 814-16 chr12 65647338 65648023 + 2 NA Intergenic Intergenic -5308 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 128-25 chr17 76038764 76038836 + 2 NA TTS (NM_001260502) TTS (NM_001260502) -11494 NM_001320747 2125 Hs.500635 NM_001988 ENSG00000167880 EVPL EVPK envoplakin protein-coding 313-299 chr2 230960274 230960480 + 2 NA Intergenic Intergenic -35135 NM_005683 9290 Hs.114545 NM_005683 ENSG00000135898 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 508-226 chr7 127384496 127384854 + 2 NA intron (NM_176814, intron 3 of 5) intron (NM_176814, intron 3 of 5) 8033 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 469-47 chr11 32730193 32730561 + 2 NA intron (NM_001008391, intron 2 of 17) L1MD3|LINE|L1 64281 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 367-156 chr17 3436748 3437097 + 2 NA Intergenic Intergenic -3081 NM_003554 8388 Hs.533931 NM_003554 ENSG00000127780 OR1E2 OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529 olfactory receptor family 1 subfamily E member 2 protein-coding 241-433 chrX 57989676 57989830 + 2 NA Intergenic MER52C|LTR|ERV1 -79120 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 397-173 chr2 160958062 160958313 + 2 NA Intergenic Intergenic -178768 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 387-186 chr2 137474179 137474528 + 2 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 453579 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 135-6 chr1 222095122 222095199 + 2 NA Intergenic Intergenic -116640 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 444-95 chr17 57032538 57032899 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -12760 NR_002818 376412 Hs.132299 NR_002818 ENSG00000261192 RNF126P1 - ring finger protein 126 pseudogene 1 pseudo 656-115 chr6 166836352 166836796 + 2 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 25951 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 318-453 chr5 114256145 114256384 + 2 NA Intergenic L1PB4|LINE|L1 -105806 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 695-22 chr11 29007327 29007849 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger -530040 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 521-203 chr5 120279343 120279701 + 2 NA Intergenic Intergenic -184756 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 177-162 chr8 124165861 124165979 + 2 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 5602 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 255-101 chr14 24566433 24566642 + 2 NA Intergenic L1M2a1|LINE|L1 9713 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 336-452 chr5 72648393 72648576 + 2 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 12185 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 315-9 chr1 72661874 72662146 + 2 NA Intergenic Intergenic -379471 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 261-83 chr12 112096257 112096422 + 2 NA intron (NM_024953, intron 1 of 23) intron (NM_024953, intron 1 of 23) 12444 NM_024953 80018 Hs.530941 NM_024953 ENSG00000111300 NAA25 C12orf30|MDM20|NAP1 N(alpha)-acetyltransferase 25, NatB auxiliary subunit protein-coding 496-201 chr4 138478617 138478917 + 2 NA Intergenic Intergenic 169056 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 431-324 chr9 119687950 119688237 + 2 NA Intergenic L2a|LINE|L2 -246967 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 226-286 chr5 89023050 89023250 + 2 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -119045 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 232-319 chr5 173262234 173262384 + 2 NA Intergenic MIRb|SINE|MIR -27103 NM_001166175 1482 Hs.54473 NM_004387 ENSG00000183072 NKX2-5 CHNG5|CSX|CSX1|HLHS2|NKX2.5|NKX2E|NKX4-1|VSD3 NK2 homeobox 5 protein-coding 314-579 chr8 112699652 112699817 + 2 NA intron (NM_001363185, intron 11 of 66) L1MC4a|LINE|L1 56241 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 276-182 chr16 65055443 65055611 + 2 NA intron (NM_001330576, intron 1 of 11) MLT1A-int|LTR|ERVL-MaLR 66536 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 519-128 chr2 220954460 220954950 + 2 NA Intergenic Intergenic 617599 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 331-480 chr6 164030271 164030473 + 2 NA Intergenic Intergenic -358888 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 362-258 chr22 28542679 28543009 + 2 NA intron (NM_001145418, intron 2 of 22) L1ME1|LINE|L1 82975 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 292-185 chr18 73046018 73046233 + 2 NA Intergenic Intergenic 177085 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 374-183 chr2 59425598 59425859 + 2 NA Intergenic L2a|LINE|L2 208020 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 314-23 chr1 106077269 106077467 + 2 NA Intergenic MIRb|SINE|MIR -49115 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 190-17 chr10 64059360 64059508 + 2 NA Intergenic Intergenic -537544 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 193-177 chr6 112991035 112991198 + 2 NA Intergenic L2c|LINE|L2 442331 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 295-376 chr5 33264567 33264825 + 2 NA Intergenic L1MEg|LINE|L1 34961 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 259-321 chr5 109273527 109273704 + 2 NA intron (NR_149040, intron 3 of 3) L1MA8|LINE|L1 52754 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 470-281 chr8 135760010 135760362 + 2 NA Intergenic L1M5|LINE|L1 302730 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 395-363 chr9 128933510 128933720 + 2 NA intron (NM_001100877, intron 2 of 9) intron (NM_001100877, intron 2 of 9) 11332 NM_001100877 254295 Hs.709447 NM_174933 ENSG00000175287 PHYHD1 - phytanoyl-CoA dioxygenase domain containing 1 protein-coding 325-335 chr3 6685738 6685989 + 2 NA intron (NR_110123, intron 2 of 3) intron (NR_110123, intron 2 of 3) 119586 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 394-64 chr11 97466990 97467288 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 958714 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 398-321 chr7 41667564 41667828 + 2 NA Intergenic Intergenic -26223 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 413-247 chr5 130137468 130137676 + 2 NA intron (NM_175856, intron 2 of 2) Charlie8|DNA|hAT-Charlie 233107 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 357-8 chr1 78297038 78297276 + 2 NA intron (NR_027310, intron 3 of 5) L2a|LINE|L2 67558 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 337-284 chr2 176842841 176843082 + 2 NA Intergenic Intergenic 205207 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 290-214 chr2 98214475 98214648 + 2 NA intron (NR_144297, intron 13 of 18) L1ME4b|LINE|L1 65028 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 359-23 chr1 159473235 159473551 + 2 NA Intergenic Intergenic 33671 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 317-2 chr1 4214374 4214543 + 2 NA Intergenic AluJb|SINE|Alu -197593 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 390-132 chr16 59447015 59447274 + 2 NA Intergenic L1PREC2|LINE|L1 308047 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 145-41 chr18 54237035 54237127 + 2 NA Intergenic HAL1|LINE|L1 -12412 NM_003927 8932 Hs.25674 NM_003927 ENSG00000134046 MBD2 DMTase|NY-CO-41 methyl-CpG binding domain protein 2 protein-coding 343-246 chr2 77851881 77852147 + 2 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -63920 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 312-535 chr8 134724533 134724702 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -11586 NM_020863 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 235-225 chr3 31954843 31954974 + 2 NA intron (NM_001174060, intron 1 of 10) L1ME2z|LINE|L1 -26842 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 342-249 chr2 124947993 124948213 + 2 NA Intergenic Intergenic 922816 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 971-10 chr16 59685525 59686470 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 69194 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 209-59 chr11 109261936 109262061 + 2 NA Intergenic L1MA10|LINE|L1 -160192 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 471-92 chr15 71452998 71453322 + 2 NA intron (NM_024817, intron 6 of 16) MLT1A|LTR|ERVL-MaLR -94076 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 252-307 chr4 117693587 117693830 + 2 NA Intergenic L1PB4|LINE|L1 -140693 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 300-69 chr11 68922381 68922605 + 2 NA intron (NM_002180, intron 7 of 14) AluSx4|SINE|Alu 18642 NM_002180 3508 Hs.503048 NM_002180 ENSG00000132740 IGHMBP2 CATF1|CMT2S|HCSA|HMN6|SMARD1|SMUBP2|ZFAND7 immunoglobulin mu DNA binding protein 2 protein-coding 467-242 chr6 42707016 42707308 + 2 NA intron (NM_000322, intron 1 of 2) AluSz6|SINE|Alu 15435 NM_000322 5961 Hs.654489 NM_000322 ENSG00000112619 PRPH2 AOFMD|AVMD|CACD2|DS|MDBS1|PRPH|RDS|RP7|TSPAN22|rd2 peripherin 2 protein-coding 281-386 chr6 47813229 47813449 + 2 NA intron (NR_033806, intron 6 of 6) MIRb|SINE|MIR 26271 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 399-123 chr17 72711675 72711952 + 2 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -71341 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 251-248 chr3 131406053 131406232 + 2 NA Intergenic L1ME3G|LINE|L1 24368 NM_152395 131870 Hs.282050 NM_152395 ENSG00000198585 NUDT16 - nudix hydrolase 16 protein-coding 490-3 chr1 34492861 34493337 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack 176595 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 474-219 chr4 125666986 125667361 + 2 NA Intergenic MIR|SINE|MIR 159914 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 278-162 chr17 74511445 74511691 + 2 NA Intergenic L1M1|LINE|L1 19907 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 293-36 chr10 60244490 60244718 + 2 NA intron (NM_001204403, intron 8 of 43) intron (NM_001204403, intron 8 of 43) -103588 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 660-96 chr6 161874638 161875141 + 2 NA intron (NM_004562, intron 6 of 11) A-rich|Low_complexity|Low_complexity 403912 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 344-513 chr9 24420427 24420712 + 2 NA Intergenic Intergenic 125107 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 482-86 chr15 95986020 95986377 + 2 NA Intergenic Intergenic 141643 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 187-115 chr3 122159513 122159620 + 2 NA Intergenic L1MA3|LINE|L1 -24102 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 304-482 chr7 18082926 18083078 + 2 NA Intergenic L2b|LINE|L2 -3823 NM_001321871 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 718-42 chr2 117163821 117164196 + 2 NA Intergenic AluSx1|SINE|Alu -650683 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 200-248 chr7 4374621 4374752 + 2 NA Intergenic Intergenic -239849 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 214-226 chr3 171362171 171362323 + 2 NA intron (NR_027767, intron 2 of 2) intron (NR_027767, intron 2 of 2) 98158 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 349-289 chr20 20938246 20938498 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 167986 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 448-128 chr2 158539097 158539453 + 2 NA intron (NM_001005476, intron 2 of 20) intron (NM_001005476, intron 2 of 20) 82323 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 421-220 chr4 109111548 109111956 + 2 NA intron (NM_198721, intron 3 of 36) L2b|LINE|L2 190906 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 840-11 chr11 120688879 120689541 + 2 NA intron (NM_001282470, intron 2 of 19) intron (NM_001282470, intron 2 of 19) 124774 NM_001282470 2900 Hs.538738 NM_014619 ENSG00000149403 GRIK4 EAA1|GRIK|GluK4|KA1 glutamate ionotropic receptor kainate type subunit 4 protein-coding 354-116 chr13 59271866 59272111 + 2 NA Intergenic Intergenic -740730 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 385-413 chrX 43995736 43996082 + 2 NA Intergenic L1PA5|LINE|L1 -22519 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 214-120 chr16 56201320 56201474 + 2 NA intron (NM_138736, intron 2 of 7) L2c|LINE|L2 -6872 NR_026889 26077 Hs.721567 NR_026889 ENSG00000261439 DKFZP434H168 - uncharacterized LOC26077 ncRNA 289-394 chr5 145467605 145467782 + 2 NA Intergenic Intergenic 367649 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 223-373 chr9 117571304 117571503 + 2 NA Intergenic MER51B|LTR|ERV1 -77203 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 268-121 chr14 69278901 69279126 + 2 NA intron (NM_020692, intron 1 of 15) AluSq2|SINE|Alu 18855 NM_020692 57452 Hs.21035 NM_020692 ENSG00000100626 GALNT16 GALNACT16|GALNTL1|GalNAc-T16 polypeptide N-acetylgalactosaminyltransferase 16 protein-coding 748-8 chr1 193991948 193992476 + 2 NA Intergenic L1MA4|LINE|L1 687467 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 166-49 chr2 64706037 64706179 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger -52195 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 169-49 chr17 77703002 77703137 + 2 NA Intergenic L1MCa|LINE|L1 25490 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 269-260 chr3 188381644 188381847 + 2 NA intron (NM_001167671, intron 2 of 10) intron (NM_001167671, intron 2 of 10) 156340 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 212-261 chr5 97621005 97621160 + 2 NA intron (NR_105028, intron 2 of 3) L1PA15|LINE|L1 116386 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 718-52 chr3 53947934 53948527 + 2 NA Intergenic L1MB7|LINE|L1 -56371 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 343-288 chr2 212699399 212699734 + 2 NA Intergenic Intergenic -95765 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 297-296 chr3 102471224 102471413 + 2 NA intron (NM_175056, intron 9 of 10) intron (NM_175056, intron 9 of 10) 36303 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 545-239 chr8 94707917 94708321 + 2 NA TTS (NM_001034915) TTS (NM_001034915) -11781 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 371-338 chr6 71529761 71530022 + 2 NA Intergenic Eulor9C|DNA|DNA 108864 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 565-154 chr6 40201464 40201961 + 2 NA Intergenic L1MA9|LINE|L1 154294 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 262-140 chr15 27140826 27140998 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 20407 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 568-40 chr12 133135648 133136064 + 2 NA intron (NM_015394, intron 1 of 4) intron (NM_015394, intron 1 of 4) 5229 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 318-139 chr12 41505516 41505712 + 2 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 67875 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 243-460 chr8 131291709 131291881 + 2 NA Intergenic Intergenic -250886 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 250-397 chr7 47032868 47033099 + 2 NA Intergenic AluJr|SINE|Alu -335861 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 341-301 chr20 44816375 44816552 + 2 NA Intergenic Intergenic -5917 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 268-442 chr9 103958578 103958825 + 2 NA Intergenic Intergenic -41008 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 384-409 chr9 126184955 126185196 + 2 NA Intergenic Intergenic 90840 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 357-426 chr8 5838018 5838198 + 2 NA Intergenic MLT2C2|LTR|ERVL 568440 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 202-30 chr10 55992769 55992918 + 2 NA Intergenic L1MEc|LINE|L1 -364901 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 654-6 chr1 106832913 106833398 + 2 NA intron (NR_147165, intron 2 of 2) intron (NR_147165, intron 2 of 2) 14916 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 237-368 chr8 22721150 22721318 + 2 NA intron (NM_001363233, intron 6 of 6) intron (NM_001363233, intron 6 of 6) -27754 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 634-56 chr14 64314298 64314754 + 2 NA intron (NM_001291712, intron 2 of 13) L1MDa|LINE|L1 -20116 NM_001040275 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 295-409 chr6 65175828 65175995 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -125507 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 523-188 chr3 148558554 148558949 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -139120 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 422-139 chr2 3612809 3613084 + 2 NA intron (NM_001255989, intron 1 of 3) intron (NM_001255989, intron 1 of 3) 6894 NM_001255989 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 434-278 chr8 49459155 49459518 + 2 NA Intergenic AluY|SINE|Alu 52844 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 485-305 chr9 29162449 29162822 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 49664 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 493-170 chr2 176905556 176906002 + 2 NA Intergenic Intergenic 268025 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 231-189 chr20 15410097 15410250 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 213333 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 638-105 chr4 65891078 65891540 + 2 NA Intergenic Intergenic -220814 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 373-157 chr17 54030268 54030479 + 2 NA Intergenic L1MA3|LINE|L1 207446 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 341-295 chr20 31232109 31232354 + 2 NA Intergenic Intergenic -25433 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 409-174 chr20 37492902 37493291 + 2 NA Intergenic MamGypLTR2c|LTR|Gypsy 27207 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 155-95 chr8 79233946 79234090 + 2 NA Intergenic L1PB4|LINE|L1 -98170 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 225-253 chr4 143489804 143489939 + 2 NA Intergenic L1MA1|LINE|L1 -23831 NM_003601 8467 Hs.558422 NM_003601 ENSG00000153147 SMARCA5 ISWI|SNF2H|WCRF135|hISWI|hSNF2H SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 protein-coding 334-307 chr20 11753069 11753261 + 2 NA Intergenic Intergenic 117550 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 293-339 chr5 62690870 62691134 + 2 NA Intergenic Intergenic 112183 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 434-86 chr14 82087521 82087867 + 2 NA Intergenic Intergenic -344556 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 416-278 chr5 105524757 105525070 + 2 NA Intergenic L1MEg|LINE|L1 425439 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 383-105 chr14 46725533 46725820 + 2 NA Intergenic Intergenic -73895 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 160-74 chr4 46195216 46195345 + 2 NA Intergenic MIR|SINE|MIR -71226 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 450-190 chr3 31940912 31941333 + 2 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -40628 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 123-66 chrX 152593465 152593566 + 2 NA Intergenic L1ME1|LINE|L1 -44380 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 261-338 chr6 104167630 104167808 + 2 NA Intergenic L1M1|LINE|L1 691827 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 364-89 chr11 45440635 45440927 + 2 NA Intergenic Intergenic 69384 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 239-442 chrX 47345588 47345789 + 2 NA Intergenic L1MDa|LINE|L1 -24912 NM_003446 7712 Hs.89897 NM_003446 ENSG00000147117 ZNF157 HZF22 zinc finger protein 157 protein-coding 709-31 chr18 7746183 7746738 + 2 NA intron (NM_002845, intron 1 of 30) AluSx|SINE|Alu 179144 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 710-72 chr4 168463625 168464054 + 2 NA intron (NM_001345927, intron 4 of 37) intron (NM_001345927, intron 4 of 37) 16653 NM_001345927 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DExD/H-box 60 like protein-coding 609-110 chr5 123071644 123072097 + 2 NA Intergenic L2c|LINE|L2 -17371 NM_001136239 93166 Hs.135118 NM_001136239 ENSG00000061455 PRDM6 KMT8C|PDA3|PRISM PR/SET domain 6 protein-coding 322-401 chr4 181732474 181732680 + 2 NA Intergenic Intergenic 97396 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 438-229 chr5 144174925 144175273 + 2 NA intron (NM_020768, intron 2 of 3) intron (NM_020768, intron 2 of 3) 4226 NM_020768 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 419-146 chr2 113737496 113737852 + 2 NA intron (NM_001330315, intron 7 of 16) intron (NM_001330315, intron 7 of 16) -16306 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 887-2 chr10 39267111 39267697 + 2 NA Intergenic ALR/Alpha|Satellite|centr 570808 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 407-77 chr14 40693430 40693738 + 2 NA Intergenic Intergenic -261127 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 306-229 chr2 45898962 45899225 + 2 NA intron (NM_005400, intron 2 of 14) L2b|LINE|L2 247418 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 337-192 chr16 31539617 31539850 + 2 NA Intergenic MER9a3|LTR|ERVK 11756 NM_001318222 51327 Hs.274309 NM_016633 ENSG00000169877 AHSP EDRF|ERAF alpha hemoglobin stabilizing protein protein-coding 196-83 chr15 57568003 57568182 + 2 NA Intergenic CR1_Mam|LINE|CR1 -23812 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 348-227 chr2 74338312 74338653 + 2 NA intron (NM_133478, intron 3 of 30) L1ME4b|LINE|L1 4934 NM_133478 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 312-189 chr17 57510156 57510348 + 2 NA intron (NM_001322250, intron 6 of 13) intron (NM_001322250, intron 6 of 13) 13345 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 238-430 chrX 76839280 76839482 + 2 NA intron (NR_110403, intron 1 of 3) THE1C-int|LTR|ERVL-MaLR 79979 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 263-399 chr7 69074053 69074234 + 2 NA Intergenic Intergenic 523481 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 520-164 chr20 12256350 12256689 + 2 NA Intergenic MIRc|SINE|MIR 338626 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 326-49 chr1 227582104 227582337 + 2 NA intron (NM_001367909, intron 1 of 3) L1ME3A|LINE|L1 18664 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 391-131 chr16 79498974 79499210 + 2 NA Intergenic Intergenic 101645 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 425-261 chr6 91473018 91473230 + 2 NA Intergenic LTR16A1|LTR|ERVL -48536 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 389-120 chr16 34592659 34592880 + 2 NA Intergenic Intergenic -211289 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 258-205 chr2 152263752 152263934 + 2 NA Intergenic Intergenic -71331 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 303-256 chr20 56067609 56067865 + 2 NA Intergenic L1ME4a|LINE|L1 -62218 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 480-318 chr9 107045223 107045547 + 2 NA intron (NR_126029, intron 4 of 4) MIR3|SINE|MIR 57603 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 480-288 chr8 57354990 57355363 + 2 NA intron (NR_125818, intron 7 of 8) intron (NR_125818, intron 7 of 8) 11389 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 166-58 chr2 206664125 206664237 + 2 NA intron (NM_001093730, intron 10 of 11) Charlie1|DNA|hAT-Charlie 19954 NM_001102659 200726 NM_001102659 ENSG00000235118 FAM237A - family with sequence similarity 237 member A protein-coding 351-217 chr2 59786728 59787051 + 2 NA Intergenic Intergenic 569181 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 227-61 chr11 41593118 41593272 + 2 NA Intergenic Intergenic -121373 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 247-316 chr5 15837147 15837304 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -97957 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 352-33 chr1 236309001 236309290 + 2 NA Intergenic Intergenic -27187 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 273-302 chr3 158248819 158249009 + 2 NA intron (NM_001271838, intron 4 of 9) L1ME1|LINE|L1 138825 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 254-266 chr4 31676809 31677011 + 2 NA Intergenic L2|LINE|L2 170366 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 327-5 chr1 42917560 42917744 + 2 NA Intergenic L1MCa|LINE|L1 41216 NM_006516 6513 Hs.473721 NM_006516 ENSG00000117394 SLC2A1 CSE|DYT17|DYT18|DYT9|EIG12|GLUT|GLUT-1|GLUT1|GLUT1DS|HTLVR|PED|SDCHCN solute carrier family 2 member 1 protein-coding 238-321 chr6 63904192 63904374 + 2 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 97447 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 377-354 chr6 140248214 140248515 + 2 NA Intergenic AluY|SINE|Alu 43112 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 744-35 chr2 173884587 173885299 + 2 NA Intergenic AluSg|SINE|Alu 78937 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 339-209 chr17 34477230 34477565 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 101972 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 441-21 chr10 25052225 25052519 + 2 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 9907 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 396-253 chr4 66614863 66615111 + 2 NA Intergenic L1PA16|LINE|L1 338163 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 206-4 chr1 42805822 42805988 + 2 NA Intergenic MIRb|SINE|MIR -11217 NM_001017922 114625 Hs.439437 NM_018538 ENSG00000164010 ERMAP BTN5|PRO2801|RD|SC erythroblast membrane associated protein (Scianna blood group) protein-coding 514-155 chr2 145453303 145453763 + 2 NA Intergenic Intergenic 785566 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 308-139 chr14 45971515 45971759 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -92522 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 341-375 chr4 38303581 38303875 + 2 NA Intergenic MER52A|LTR|ERV1 -63186 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 618-110 chr6 97383310 97383713 + 2 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 77925 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 308-292 chr3 58701926 58702091 + 2 NA Intergenic Intergenic -35234 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 387-198 chr20 18404533 18404756 + 2 NA intron (NM_001367611, intron 13 of 20) L1M1|LINE|L1 25595 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 357-227 chr2 208506623 208506893 + 2 NA Intergenic L1PA16|LINE|L1 -35884 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 645-135 chr9 25994321 25994821 + 2 NA Intergenic L1PBa|LINE|L1 -72104 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 303-74 chr11 97254076 97254358 + 2 NA Intergenic Intergenic 745792 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 407-24 chr1 245891788 245892027 + 2 NA intron (NM_022743, intron 8 of 11) AluJr|SINE|Alu 525505 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 331-487 chr7 29503469 29503700 + 2 NA intron (NM_001293077, intron 3 of 4) MER117|DNA|hAT-Charlie 19768 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 444-80 chr16 6828915 6829138 + 2 NA intron (NM_001142334, intron 1 of 13) MER41E|LTR|ERV1 55217 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 169-44 chr15 65162648 65162744 + 2 NA intron (NM_006660, intron 5 of 13) intron (NM_006660, intron 5 of 13) 22646 NM_006660 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 179-15 chr12 26417767 26417924 + 2 NA intron (NM_002223, intron 50 of 56) L1MA10|LINE|L1 222272 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 256-263 chr3 97897066 97897222 + 2 NA intron (NM_153605, intron 12 of 21) intron (NM_153605, intron 12 of 21) 75133 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 290-198 chr2 17408927 17409215 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 109369 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 279-163 chr2 12461497 12461670 + 2 NA intron (NR_110196, intron 4 of 5) L1M4|LINE|L1 -255289 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 279-328 chr5 68598912 68599101 + 2 NA Intergenic Intergenic 306429 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 289-75 chr10 130329318 130329517 + 2 NA Intergenic Intergenic 193008 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 479-243 chr8 71631447 71631773 + 2 NA Intergenic Intergenic -83516 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 458-29 chr10 105003675 105004001 + 2 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -337622 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 249-212 chr2 122741788 122741968 + 2 NA Intergenic MIRb|SINE|MIR 331603 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 263-241 chr21 33311492 33311664 + 2 NA Intergenic Intergenic -13392 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 395-14 chr1 161024355 161024648 + 2 NA Intergenic AluSp|SINE|Alu -3349 NM_016946 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 207-199 chr3 116870168 116870344 + 2 NA Intergenic Intergenic -19889 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 449-2 chr1 49501679 49502032 + 2 NA intron (NR_136623, intron 2 of 12) L1M1|LINE|L1 -29770 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 267-264 chr3 117421674 117421867 + 2 NA Intergenic Intergenic 269155 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 350-356 chr4 87086990 87087244 + 2 NA intron (NM_005935, intron 4 of 19) intron (NM_005935, intron 4 of 19) 80116 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 279-146 chr18 14029004 14029201 + 2 NA Intergenic L1M4c|LINE|L1 103333 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 353-439 chr6 40268937 40269237 + 2 NA Intergenic Intergenic 86919 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 367-284 chr3 77377568 77377841 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 279692 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 222-43 chr10 78849950 78850131 + 2 NA Intergenic L2a|LINE|L2 217408 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 283-205 chr19 27514391 27514629 + 2 NA Intergenic ALR/Alpha|Satellite|centr -278921 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 368-368 chr5 104030415 104030701 + 2 NA Intergenic MER52-int|LTR|ERV1 -467769 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 286-134 chr15 46480802 46481046 + 2 NA Intergenic L1MD|LINE|L1 -703165 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 417-114 chr18 12395682 12396051 + 2 NA Intergenic L2b|LINE|L2 -12063 NM_006553 10650 Hs.514718 NM_006553 ENSG00000141391 PRELID3A C18orf43|HFL-EDDG1|SLMO1 PRELI domain containing 3A protein-coding 703-40 chr19 53220985 53221354 + 2 NA Intergenic Intergenic 8221 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 396-166 chr2 66329780 66330023 + 2 NA Intergenic Intergenic 28427 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 303-37 chr10 44554946 44555169 + 2 NA Intergenic Intergenic -169960 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 555-128 chr3 78090705 78091131 + 2 NA Intergenic Intergenic -41955 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 355-548 chrX 129053014 129053258 + 2 NA Intergenic Intergenic 470354 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 363-375 chr5 155963361 155963664 + 2 NA Intergenic Intergenic -363245 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 223-179 chr20 510998 511216 + 2 NA intron (NM_001362771, intron 1 of 13) AluJb|SINE|Alu 32683 NM_177560 1457 Hs.644056 NM_001895 ENSG00000101266 CSNK2A1 CK2A1|CKII|Cka1|Cka2|OCNDS casein kinase 2 alpha 1 protein-coding 150-58 chr20 48762560 48762682 + 2 NA intron (NM_020820, intron 1 of 39) MIR|SINE|MIR 65378 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 418-305 chr9 38451718 38451982 + 2 NA Intergenic L1MA6|LINE|L1 -27396 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 370-386 chr6 20318989 20319317 + 2 NA Intergenic LTR12C|LTR|ERV1 -82726 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 407-124 chr19 16815878 16816102 + 2 NA 3' UTR (NM_001290355, exon 21 of 21) 3' UTR (NM_001290355, exon 21 of 21) -13408 NM_015260 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 237-45 chr11 5784030 5784204 + 2 NA Intergenic Intergenic 4699 NM_001001913 79473 Hs.690209 NM_001001913 ENSG00000181001 OR52N1 OR11-61 olfactory receptor family 52 subfamily N member 1 protein-coding 244-351 chr7 107109626 107109768 + 2 NA intron (NM_002736, intron 2 of 10) intron (NM_002736, intron 2 of 10) -59264 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 274-89 chr12 11590818 11590971 + 2 NA Intergenic MIRc|SINE|MIR 42864 NR_033890 338817 Hs.733066 NR_033890 ENSG00000247157 LINC01252 - long intergenic non-protein coding RNA 1252 ncRNA 273-244 chr2 187484483 187484698 + 2 NA intron (NM_001318941, intron 6 of 7) intron (NM_001318941, intron 6 of 7) -36338 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 552-28 chr10 128666689 128667093 + 2 NA Intergenic L1ME2z|LINE|L1 -245942 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 353-545 chr8 139309051 139309291 + 2 NA Intergenic L3|LINE|CR1 393952 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 544-238 chr9 35413787 35414289 + 2 NA intron (NR_003582, intron 2 of 10) intron (NR_003582, intron 2 of 10) 7283 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 296-45 chr10 55566147 55566398 + 2 NA intron (NM_001354404, intron 2 of 34) L1MB3|LINE|L1 -32770 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 375-405 chr8 79142173 79142412 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -189896 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 365-309 chr5 12542323 12542656 + 2 NA Intergenic Intergenic -32368 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 599-132 chr8 53635234 53635738 + 2 NA Intergenic Intergenic -111521 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 573-115 chr3 53418546 53418958 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -71209 NM_001290205 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 279-62 chr10 129214872 129215125 + 2 NA Intergenic L1M5|LINE|L1 -252243 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 257-419 chr8 118881420 118881597 + 2 NA Intergenic Intergenic 70377 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 307-3 chr1 23975254 23975520 + 2 NA intron (NM_054016, intron 2 of 5) intron (NM_054016, intron 2 of 5) 4940 NM_001191009 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 129-71 chr7 41595104 41595168 + 2 NA Intergenic L2c|LINE|L2 -98783 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 441-148 chr21 27821422 27821780 + 2 NA Intergenic L1PA16|LINE|L1 99222 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 220-166 chr2 70041964 70042139 + 2 NA intron (NR_033872, intron 6 of 10) MER103C|DNA|hAT-Charlie 44964 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 274-359 chr7 85511598 85511757 + 2 NA Intergenic Intergenic 90555 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 375-387 chr7 97277286 97277529 + 2 NA Intergenic Intergenic 160814 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 706-48 chr3 114017653 114018108 + 2 NA intron (NR_148531, intron 6 of 14) intron (NR_148531, intron 6 of 14) 38646 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 317-409 chr6 36479429 36479616 + 2 NA intron (NR_104480, intron 3 of 5) intron (NR_104480, intron 3 of 5) 36522 NM_001286579 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 336-341 chr21 30760844 30761083 + 2 NA Intergenic Intergenic -5535 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 253-222 chr20 19454447 19454625 + 2 NA intron (NM_020689, intron 2 of 16) L3|LINE|CR1 -169940 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 252-214 chr2 140573747 140573952 + 2 NA intron (NM_018557, intron 43 of 90) intron (NM_018557, intron 43 of 90) 12836 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 336-530 chr7 144466721 144466925 + 2 NA intron (NM_001042482, intron 7 of 7) intron (NM_001042482, intron 7 of 7) -56596 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 248-429 chr9 76366733 76366955 + 2 NA Intergenic Intergenic 27582 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 446-238 chr5 46020578 46020866 + 2 NA Intergenic ALR/Alpha|Satellite|centr -324342 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 494-200 chr4 43528100 43528431 + 2 NA Intergenic L1PA4|LINE|L1 -35722 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 363-463 chr8 138188201 138188405 + 2 NA intron (NM_015912, intron 9 of 19) MER21C|LTR|ERVL -104758 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 559-133 chr4 20176483 20176923 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -75202 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 411-266 chr6 161346949 161347255 + 2 NA TTS (NM_013988) TTS (NM_013988) -73041 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 183-50 chr15 27561318 27561456 + 2 NA Intergenic L1ME1|LINE|L1 -400068 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 244-115 chr16 24380537 24380714 + 2 NA Intergenic LTR26D|LTR|ERV1 125072 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 216-155 chr19 58128685 58128818 + 2 NA exon (NM_024620, exon 4 of 4) exon (NM_024620, exon 4 of 4) -10325 NM_001145542 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 203-178 chr5 42228428 42228565 + 2 NA Intergenic L1PREC2|LINE|L1 -53151 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 319-286 chr20 14637998 14638210 + 2 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) 83720 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 460-163 chr2 217353684 217354124 + 2 NA intron (NR_026597, intron 8 of 12) intron (NR_026597, intron 8 of 12) 71171 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 243-362 chr5 78572131 78572337 + 2 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 76538 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 323-105 chr12 14229369 14229656 + 2 NA Intergenic L1M2|LINE|L1 -136120 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 762-68 chr8 54715779 54716289 + 2 NA Intergenic Intergenic 99938 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 414-69 chr12 41908721 41909048 + 2 NA Intergenic Intergenic 144695 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 363-52 chr10 59737984 59738329 + 2 NA intron (NM_001304732, intron 3 of 3) intron (NM_001304732, intron 3 of 3) 15299 NM_001304731 100507027 Hs.648790 NM_001304731 ENSG00000227877 MRLN LINC00948|Linc-RAM|M1|MLN|MUSER1 myoregulin protein-coding 389-37 chr10 69818922 69819220 + 2 NA intron (NM_080801, intron 1 of 38) intron (NM_080801, intron 1 of 38) 17165 NM_001368897 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 310-400 chr5 46097256 46097503 + 2 NA Intergenic Intergenic -400999 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 986-7 chr10 25343015 25343698 + 2 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -167080 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 671-92 chr7 81830721 81831280 + 2 NA Intergenic L1MA4|LINE|L1 -60953 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 418-34 chr10 111115652 111116037 + 2 NA intron (NR_159949, intron 2 of 2) intron (NR_159949, intron 2 of 2) 1553 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 242-220 chr21 25382720 25382886 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 48898 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 308-348 chr4 97178096 97178252 + 2 NA Intergenic Intergenic -188752 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 356-116 chr12 114077338 114077593 + 2 NA Intergenic Intergenic -111140 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 282-390 chr5 128869975 128870194 + 2 NA Intergenic Intergenic -95043 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 212-354 chr9 109750017 109750163 + 2 NA intron (NM_001037293, intron 1 of 6) intron (NM_001037293, intron 1 of 6) -30108 NM_147150 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 211-198 chr3 148171936 148172087 + 2 NA Intergenic L1M4|LINE|L1 93852 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 547-215 chr7 29624714 29625109 + 2 NA Intergenic Intergenic 55917 NR_039600 100616354 NR_039600 ENSG00000212024 MIR550A3 mir-550a-3 microRNA 550a-3 ncRNA 326-280 chr2 191126337 191126633 + 2 NA intron (NM_003151, intron 3 of 23) intron (NM_003151, intron 3 of 23) 24509 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 170-87 chr21 35063426 35063530 + 2 NA Intergenic (ACACAC)n|Simple_repeat|Simple_repeat -14180 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 137-79 chr6 17160787 17160918 + 2 NA Intergenic L2c|LINE|L2 58594 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 687-80 chr3 180788259 180788915 + 2 NA intron (NR_109986, intron 3 of 13) L1ME3B|LINE|L1 81591 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 233-22 chr1 209871391 209871578 + 2 NA Intergenic Intergenic 43512 NM_014388 27042 Hs.194754 NM_014388 ENSG00000117597 UTP25 C1orf107|DEF|DIEXF|DJ434O14.5 UTP25 small subunit processor component protein-coding 351-152 chr15 100074863 100075144 + 2 NA intron (NM_139057, intron 15 of 21) intron (NM_139057, intron 15 of 21) 266972 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 402-302 chr6 132229050 132229385 + 2 NA Intergenic Intergenic 95239 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 160-27 chr14 32697023 32697158 + 2 NA intron (NM_004274, intron 9 of 13) intron (NM_004274, intron 9 of 13) -241789 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 160-110 chr7 119019554 119019661 + 2 NA Intergenic Intergenic 794903 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 419-33 chr10 72624750 72625123 + 2 NA intron (NM_006077, intron 1 of 11) intron (NM_006077, intron 1 of 11) 1143 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 445-6 chr1 69644302 69644631 + 2 NA intron (NM_001366842, intron 1 of 7) L1M5|LINE|L1 75125 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 409-255 chr5 142456014 142456400 + 2 NA intron (NR_120664, intron 3 of 3) MLT2C2|LTR|ERVL 130914 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 226-317 chr7 12173088 12173259 + 2 NA Intergenic Intergenic -38121 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 329-75 chr10 100125408 100125692 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -43681 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 314-586 chr8 126636022 126636288 + 2 NA Intergenic Intergenic -77677 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 260-334 chr5 6394473 6394630 + 2 NA Intergenic Intergenic -16004 NM_032286 84246 Hs.13885 NM_032286 ENSG00000133398 MED10 L6|NUT2|TRG20 mediator complex subunit 10 protein-coding 318-292 chr2 156307731 156307975 + 2 NA Intergenic Intergenic 24868 NM_006186 4929 Hs.563344 NM_006186 ENSG00000153234 NR4A2 HZF-3|NOT|NURR1|RNR1|TINUR nuclear receptor subfamily 4 group A member 2 protein-coding 341-417 chr5 9104101 9104300 + 2 NA intron (NM_003966, intron 16 of 22) MIRb|SINE|MIR -50305 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 185-41 chr11 114593376 114593519 + 2 NA intron (NM_017678, intron 2 of 5) L1MA3|LINE|L1 2339 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 179-86 chr4 86176096 86176233 + 2 NA intron (NM_001318069, intron 3 of 13) intron (NM_001318069, intron 3 of 13) 56358 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 295-93 chr12 16190541 16190804 + 2 NA intron (NM_001170798, intron 8 of 8) intron (NM_001170798, intron 8 of 8) 87013 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 240-296 chr3 144628703 144628875 + 2 NA Intergenic Intergenic 655708 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 280-265 chr3 133313061 133313229 + 2 NA intron (NM_001282865, intron 2 of 3) L1MC4|LINE|L1 -56024 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 272-206 chr2 114327240 114327388 + 2 NA Intergenic L1ME3B|LINE|L1 -115327 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 488-174 chr3 85079810 85080164 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -17723 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 496-202 chr5 6864617 6865034 + 2 NA Intergenic Intergenic -36904 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 275-242 chr3 29078992 29079261 + 2 NA Intergenic L1MA4|LINE|L1 201813 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 620-19 chr10 110734924 110735423 + 2 NA intron (NM_001134363, intron 1 of 13) Tigger7|DNA|TcMar-Tigger 90837 NM_001134363 282996 Hs.116630 NM_001134363 ENSG00000203867 RBM20 - RNA binding motif protein 20 protein-coding 433-263 chr7 46105020 46105375 + 2 NA Intergenic L1M5|LINE|L1 -183925 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 287-307 chr5 27506675 27506845 + 2 NA Intergenic Intergenic 34468 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 939-14 chr2 125467754 125468353 + 2 NA Intergenic Intergenic 649932 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 413-152 chr2 150672489 150672771 + 2 NA Intergenic L1ME3A|LINE|L1 43733 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 332-36 chr1 205905611 205905910 + 2 NA Intergenic L1M5|LINE|L1 15740 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 309-506 chr7 26936212 26936416 + 2 NA Intergenic Intergenic -71724 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 267-455 chrX 38225880 38226078 + 2 NA Intergenic MER41D|LTR|ERV1 -5055 NM_001170751 8406 Hs.15154 NM_006307 ENSG00000101955 SRPX DRS|ETX1|HEL-S-83p|SRPX1 sushi repeat containing protein X-linked protein-coding 247-100 chr13 43536610 43536842 + 2 NA intron (NM_001347965, intron 1 of 15) intron (NM_001347965, intron 1 of 15) 87874 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 263-457 chrX 63618148 63618313 + 2 NA Intergenic AluSz|SINE|Alu 53272 NR_138419 100874355 Hs.671524 NR_138419 ENSG00000231729 ARHGEF9-IT1 - ARHGEF9 intronic transcript 1 ncRNA 305-537 chr8 86126436 86126694 + 2 NA intron (NM_152565, intron 2 of 7) intron (NM_152565, intron 2 of 7) 27655 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 368-385 chr6 3149055 3149387 + 2 NA intron (NM_004332, intron 6 of 6) intron (NM_004332, intron 6 of 6) 8323 NM_001069 7280 Hs.654543 NM_001069 ENSG00000137267 TUBB2A CDCBM5|TUBB|TUBB2 tubulin beta 2A class IIa protein-coding 252 chr1 10141051 10141293 + 2 NA intron (NM_006048, intron 16 of 26) MLT1D|LTR|ERVL-MaLR -69398 NM_001365951 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 316-287 chr2 121816018 121816231 + 2 NA Intergenic MIR|SINE|MIR 60473 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 283-207 chr19 30997788 30997943 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -169645 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 343-99 chr12 31932037 31932315 + 2 NA Intergenic MLT2F|LTR|ERVL -27239 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 593-78 chr2 116217396 116217768 + 2 NA Intergenic Intergenic 873767 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 347-151 chr15 61062097 61062354 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 167077 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 502-88 chr14 66912341 66912654 + 2 NA intron (NM_001024218, intron 5 of 21) intron (NM_001024218, intron 5 of 21) -276943 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 338-157 chr13 111640938 111641201 + 2 NA intron (NR_135814, intron 1 of 1) intron (NR_135814, intron 1 of 1) 45060 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 266-358 chr6 40231544 40231803 + 2 NA Intergenic Intergenic 124333 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 201-63 chr12 52730074 52730202 + 2 NA Intergenic Intergenic -26614 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 385-325 chr6 46506904 46507240 + 2 NA intron (NR_125837, intron 1 of 2) L1MD3|LINE|L1 -15005 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 289-6 chr1 44453091 44453347 + 2 NA intron (NM_001319957, intron 1 of 13) L1ME3G|LINE|L1 29218 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 261-251 chr3 115961895 115962102 + 2 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -56872 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 408-64 chr11 44276425 44276701 + 2 NA intron (NM_021926, intron 1 of 3) intron (NM_021926, intron 1 of 3) 33576 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 349-185 chr15 68541421 68541658 + 2 NA intron (NM_001324014, intron 2 of 12) Charlie29a|DNA|hAT-Charlie 23166 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 397-231 chr4 99236473 99236708 + 2 NA intron (NR_037884, intron 4 of 9) L1ME4a|LINE|L1 -17344 NM_001102470 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 212-159 chr2 88890439 88890623 + 2 NA Intergenic L1P1|LINE|L1 78161 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 749-76 chr5 37621228 37621743 + 2 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 213337 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 386-321 chr7 18277967 18278203 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -12007 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 120-25 chr17 35569525 35569642 + 2 NA intron (NR_135479, intron 1 of 1) intron (NR_135479, intron 1 of 1) 1469 NR_135479 105371743 NR_135479 SNHG30 LINC02001 small nucleolar RNA host gene 30 ncRNA 342-517 chr8 81044618 81044842 + 2 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 67338 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 530-154 chr21 19631800 19632140 + 2 NA Intergenic Intergenic 267785 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 230-383 chr8 120010648 120010840 + 2 NA intron (NM_022783, intron 8 of 8) L1ME4a|LINE|L1 -114358 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 234-73 chr12 33751427 33751638 + 2 NA Intergenic LTR82B|LTR|ERVL -270964 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 804-57 chr5 163713876 163714538 + 2 NA Intergenic Intergenic 208588 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 134-64 chr4 152001426 152001535 + 2 NA Intergenic L1ME4b|LINE|L1 -99273 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 241-139 chr16 83804154 83804376 + 2 NA promoter-TSS (NR_120308) promoter-TSS (NR_120308) -289 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 436-77 chr13 96660433 96660699 + 2 NA intron (NM_153456, intron 1 of 1) L1M3|LINE|L1 233337 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 239-15 chr1 201770840 201771020 + 2 NA intron (NM_001167738, intron 1 of 26) (TACAG)n|Simple_repeat|Simple_repeat 31030 NM_001167738 89796 Hs.585374 NM_020443 ENSG00000134369 NAV1 POMFIL3|STEERIN1|UNC53H1 neuron navigator 1 protein-coding 222-31 chr10 36105549 36105716 + 2 NA Intergenic Intergenic 327330 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 198-22 chr10 43145143 43145309 + 2 NA intron (NM_018590, intron 1 of 7) MER57F|LTR|ERV1 6781 NR_135077 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 367-271 chr22 48567921 48568228 + 2 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) -8266 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 452-239 chr6 133323210 133323526 + 2 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 81869 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 407-65 chr12 62423342 62423704 + 2 NA Intergenic L1MEc|LINE|L1 -43303 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 267-91 chr12 105635621 105635846 + 2 NA Intergenic L2|LINE|L2 -68470 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 422-15 chr1 178805673 178805938 + 2 NA intron (NM_152663, intron 4 of 19) HAL1|LINE|L1 65272 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 481-310 chr8 140927000 140927295 + 2 NA intron (NM_001352699, intron 1 of 35) intron (NM_001352699, intron 1 of 35) 73857 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 299-334 chr4 98396946 98397215 + 2 NA intron (NM_021159, intron 6 of 14) intron (NM_021159, intron 6 of 14) 135696 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 361-19 chr1 164100614 164100887 + 2 NA Intergenic L1M3|LINE|L1 -458610 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 364-7 chr1 40111549 40111897 + 2 NA Intergenic L1PA16|LINE|L1 -14253 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 367-410 chr7 15088213 15088437 + 2 NA Intergenic Intergenic -113467 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 294-381 chr5 82575715 82575911 + 2 NA Intergenic Intergenic -264342 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 548-125 chr2 177854148 177854517 + 2 NA intron (NM_001077197, intron 6 of 20) intron (NM_001077197, intron 6 of 20) 34424 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 460-190 chr3 29194342 29194710 + 2 NA Intergenic L1MA8|LINE|L1 86413 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 366-94 chr12 19096334 19096638 + 2 NA Intergenic Intergenic -33247 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 284-134 chr15 57232402 57232570 + 2 NA intron (NM_207038, intron 10 of 19) intron (NM_207038, intron 10 of 19) 13056 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 310-37 chr10 18939772 18939938 + 2 NA Intergenic L2a|LINE|L2 -108946 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 146-27 chr14 85968931 85969063 + 2 NA intron (NR_110155, intron 1 of 3) MLT1D|LTR|ERVL-MaLR 34319 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 228-188 chr20 9098106 9098254 + 2 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 29126 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 538-89 chr17 66880109 66880512 + 2 NA intron (NM_145811, intron 3 of 5) intron (NM_145811, intron 3 of 5) 45193 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 446-108 chr15 53993946 53994213 + 2 NA intron (NM_001329919, intron 1 of 31) intron (NM_001329919, intron 1 of 31) 15638 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 336-243 chr19 33717720 33717896 + 2 NA intron (NM_001127895, intron 3 of 4) MER41E|LTR|ERV1 33280 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 188-77 chr17 60867407 60867551 + 2 NA intron (NM_001330413, intron 7 of 25) L1M5|LINE|L1 189628 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 359-383 chr5 25826552 25826841 + 2 NA Intergenic L1M4b|LINE|L1 635743 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 325-120 chr12 13109350 13109544 + 2 NA Intergenic L1PA17|LINE|L1 -5780 NM_001367362 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 356-353 chr4 37238204 37238411 + 2 NA Intergenic Intergenic 3684 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 128-67 chr7 15608468 15608559 + 2 NA Intergenic Intergenic -46498 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 203-21 chr10 25386478 25386629 + 2 NA intron (NM_020752, intron 2 of 10) L1MB2|LINE|L1 -210277 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 268-377 chr7 81134768 81134967 + 2 NA Intergenic Intergenic -212478 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 366-114 chr12 124287805 124288161 + 2 NA intron (NM_001347902, intron 3 of 4) L1MC4|LINE|L1 -1181 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 200-245 chr6 127132805 127132970 + 2 NA intron (NM_032784, intron 1 of 4) intron (NM_032784, intron 1 of 4) 14216 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 371-170 chr2 80014313 80014535 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -147841 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 151-76 chr7 35386859 35386947 + 2 NA Intergenic Intergenic 73048 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 351-432 chr7 9658709 9659034 + 2 NA Intergenic Intergenic 24601 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 235-398 chr9 106118802 106118969 + 2 NA Intergenic Intergenic 424344 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 332-300 chr21 22594500 22594758 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -484655 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 251-227 chr3 23338863 23339070 + 2 NA intron (NM_001370225, intron 3 of 5) L1MC4a|LINE|L1 135639 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 264-385 chr7 41028663 41028820 + 2 NA Intergenic Intergenic -48802 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 126-25 chr16 62203777 62203844 + 2 NA Intergenic Intergenic -167372 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 422-250 chr5 169482990 169483386 + 2 NA Intergenic L1ME1|LINE|L1 -100585 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 549-57 chr13 111933253 111933629 + 2 NA Intergenic L1PB1|LINE|L1 -38869 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 734-38 chr2 107191389 107191994 + 2 NA intron (NR_049853, intron 2 of 3) L1MCa|LINE|L1 157834 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 353-488 chr7 62711934 62712271 + 2 NA Intergenic ALR/Alpha|Satellite|centr 591954 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 349-382 chr4 106626415 106626660 + 2 NA Intergenic Intergenic 192913 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 318-116 chr11 106987810 106988094 + 2 NA intron (NM_001256424, intron 1 of 8) intron (NM_001256424, intron 1 of 8) 30524 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 363-437 chr8 71885142 71885346 + 2 NA intron (NR_033651, intron 1 of 2) L1MA1|LINE|L1 -40748 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 487-34 chr10 18747156 18747575 + 2 NA Intergenic AluSx1|SINE|Alu 87934 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 295-164 chr16 47789426 47789646 + 2 NA Intergenic L1MA9|LINE|L1 -69045 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 336-501 chr6 169582158 169582335 + 2 NA intron (NM_182552, intron 24 of 25) AluSx1|SINE|Alu 119783 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 311-182 chr16 69753294 69753473 + 2 NA intron (NM_014062, intron 2 of 8) intron (NM_014062, intron 2 of 8) 1543 NM_014062 28987 Hs.271695 NM_014062 ENSG00000141101 NOB1 ART-4|MST158|MSTP158|NOB1P|PSMD8BP1 NIN1 (RPN12) binding protein 1 homolog protein-coding 322-321 chr3 25921953 25922267 + 2 NA Intergenic Intergenic -48415 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 869-48 chr9 96599006 96599580 + 2 NA intron (NR_147239, intron 1 of 14) AluSq2|SINE|Alu 20550 NM_001351567 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 305-517 chr8 13584686 13584896 + 2 NA intron (NM_001348082, intron 1 of 16) LTR16B1|LTR|ERVL 17922 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 339-407 chr4 64225182 64225395 + 2 NA Intergenic Intergenic 184162 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 457-55 chr12 129684646 129685015 + 2 NA intron (NM_133448, intron 2 of 8) THE1C-int|LTR|ERVL-MaLR 219195 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 705-70 chr3 114619620 114620216 + 2 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 4288 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 494-53 chr12 97334541 97334965 + 2 NA Intergenic Intergenic -128023 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 482-306 chrX 100303036 100303465 + 2 NA intron (NM_020766, intron 4 of 4) intron (NM_020766, intron 4 of 4) 107023 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 262-256 chr20 57088574 57088796 + 2 NA Intergenic Intergenic -125011 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 386-334 chr7 113711983 113712248 + 2 NA Intergenic Intergenic 206894 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 295-366 chr5 4727675 4727857 + 2 NA Intergenic L1MC3|LINE|L1 -45715 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 824-50 chr8 133714584 133715291 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -30871 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 684-86 chr4 63399292 63399726 + 2 NA Intergenic Intergenic 1009941 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 292 chr1 5031331 5031505 + 2 NA Intergenic Intergenic 376809 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 372-194 chr17 71138699 71139034 + 2 NA intron (NR_104152, intron 2 of 3) L1PB1|LINE|L1 63313 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 326-327 chr3 26822156 26822425 + 2 NA Intergenic MER61-int|LTR|ERV1 127733 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 467-95 chr15 90114061 90114461 + 2 NA intron (NR_149130, intron 2 of 2) LTR8B|LTR|ERV1 -11707 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 264-99 chr12 103656427 103656608 + 2 NA intron (NM_017564, intron 15 of 68) intron (NM_017564, intron 15 of 68) 69244 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 185-134 chr3 37572666 37572794 + 2 NA intron (NM_002207, intron 15 of 27) intron (NM_002207, intron 15 of 27) 120589 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 297-213 chr2 57719940 57720180 + 2 NA Intergenic MIR|SINE|MIR -187591 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 492-239 chr7 28976711 28977094 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -3065 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 312-167 chr15 73854463 73854676 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -18995 NM_153356 161514 Hs.124512 NM_153356 ENSG00000167139 TBC1D21 MgcRabGAP TBC1 domain family member 21 protein-coding 543-162 chr22 26094765 26095231 + 2 NA Intergenic MIR1_Amn|SINE|MIR -74464 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 419-253 chr6 63185777 63186138 + 2 NA Intergenic Intergenic 134020 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 255-327 chr5 51346572 51346704 + 2 NA Intergenic Intergenic 36694 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 219-42 chr11 13591219 13591371 + 2 NA Intergenic L1MA3|LINE|L1 -77373 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 623-126 chr8 64292356 64292842 + 2 NA intron (NR_125826, intron 1 of 4) L1MEc|LINE|L1 75959 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 209-218 chr4 28651212 28651418 + 2 NA Intergenic L1PA12|LINE|L1 -168267 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 557-201 chr8 115811048 115811576 + 2 NA Intergenic Intergenic -142337 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 250 chr1 30308957 30309125 + 2 NA Intergenic MER66-int|LTR|ERV1 -271429 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 332-244 chr2 35594576 35594788 + 2 NA Intergenic Intergenic 123277 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 446-232 chr5 29516790 29517104 + 2 NA Intergenic L1MD|LINE|L1 -120971 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 660-81 chr5 53291987 53292381 + 2 NA Intergenic Intergenic 182342 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 317-293 chr3 9504424 9504709 + 2 NA intron (NM_198560, intron 3 of 3) AluY|SINE|Alu 49256 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 363-481 chr9 133293699 133294038 + 2 NA Intergenic LTR8|LTR|ERV1 -18667 NM_020469 28 Hs.654423 NM_020469 ENSG00000175164 ABO A3GALNT|A3GALT1|GTB|NAGAT ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase protein-coding 190-92 chr2 105956863 105957043 + 2 NA Intergenic Intergenic 105106 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 286-403 chr7 13836825 13837019 + 2 NA Intergenic Intergenic 149592 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 158-81 chr4 54058382 54058514 + 2 NA intron (NM_012110, intron 1 of 5) intron (NM_012110, intron 1 of 5) 6157 NM_012110 26511 Hs.335393 NM_012110 ENSG00000109220 CHIC2 BTL cysteine rich hydrophobic domain 2 protein-coding 358-43 chr10 44188132 44188474 + 2 NA Intergenic L1ME1|LINE|L1 -104447 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 571-146 chr6 38968937 38969435 + 2 NA intron (NM_001371, intron 81 of 91) L1MB7|LINE|L1 -16079 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 467-151 chr20 37703194 37703507 + 2 NA intron (NM_030877, intron 1 of 15) L1MC4a|LINE|L1 9320 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 358-40 chr10 38215389 38215638 + 2 NA Intergenic Intergenic 39842 NR_024524 100129055 Hs.148265 NR_024524 LOC100129055 - cyclin Y like 1 pseudogene pseudo 138-78 chr6 167453038 167453144 + 2 NA Intergenic Intergenic 19699 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 387-254 chr4 93687185 93687556 + 2 NA intron (NM_001286838, intron 13 of 14) L2a|LINE|L2 -141383 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 249-321 chr5 9182735 9182909 + 2 NA intron (NM_003966, intron 11 of 22) L2|LINE|L2 -128927 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 289-354 chr4 187661478 187661687 + 2 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) 11059 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 318-469 chr6 1477249 1477438 + 2 NA Intergenic Intergenic -86932 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 537-57 chr12 127397944 127398431 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -58115 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 280-358 chr6 123283507 123283697 + 2 NA intron (NM_006073, intron 24 of 40) L1PB1|LINE|L1 -156002 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 193-203 chr8 119817993 119818125 + 2 NA intron (NM_003184, intron 3 of 25) intron (NM_003184, intron 3 of 25) 14782 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 529-218 chr8 112163730 112164145 + 2 NA Intergenic Intergenic -479556 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 131-41 chr2 155451987 155452066 + 2 NA Intergenic Intergenic 753331 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 431-269 chr7 53529507 53529806 + 2 NA Intergenic L1MA3|LINE|L1 282275 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 380-400 chr8 99047662 99047915 + 2 NA intron (NM_017890, intron 3 of 61) AluSg7|SINE|Alu 34522 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 375-103 chr12 82060860 82061139 + 2 NA Intergenic MIR|SINE|MIR 107280 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 271-129 chr14 49299578 49299821 + 2 NA Intergenic Intergenic 286681 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 274-122 chr14 46161005 46161172 + 2 NA intron (NR_102702, intron 1 of 3) L1MA4|LINE|L1 96929 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 390-332 chr6 97710362 97710705 + 2 NA Intergenic Intergenic -313998 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 515-170 chr3 170750995 170751391 + 2 NA intron (NR_135556, intron 5 of 5) intron (NR_135556, intron 5 of 5) 119002 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 341-380 chr4 58869581 58869852 + 2 NA Intergenic Intergenic -114566 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 428-182 chr3 82799251 82799577 + 2 NA Intergenic L2a|LINE|L2 813272 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 366-243 chr2 226638127 226638440 + 2 NA Intergenic Intergenic 20510 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 304-191 chr17 44665506 44665794 + 2 NA intron (NM_001145080, intron 4 of 7) intron (NM_001145080, intron 4 of 7) 9182 NM_001145080 284071 Hs.349758 NM_001033659 ENSG00000180336 MEIOC C17orf104 meiosis specific with coiled-coil domain protein-coding 302-156 chr16 52708812 52709078 + 2 NA Intergenic Intergenic -101970 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 347-181 chr18 1778754 1779079 + 2 NA Intergenic Intergenic -419287 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 308-35 chr1 196482376 196482619 + 2 NA intron (NM_001287820, intron 3 of 26) intron (NM_001287820, intron 3 of 26) 99984 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 359-411 chr5 155575912 155576263 + 2 NA Intergenic Intergenic 562332 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 550-68 chr14 25286594 25286989 + 2 NA Intergenic HERVL-int|LTR|ERVL -236494 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 570-108 chr2 78920928 78921402 + 2 NA Intergenic Intergenic -104537 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 331-65 chr10 82355555 82355767 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -122741 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 553-159 chr3 127190370 127190916 + 2 NA Intergenic L1M5|LINE|L1 -2488 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 210-196 chr4 63078669 63078794 + 2 NA Intergenic Intergenic -916966 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 128-11 chr10 119567084 119567153 + 2 NA Intergenic AluSz|SINE|Alu -24399 NM_001005339 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 415-116 chr2 12473990 12474381 + 2 NA intron (NR_110196, intron 4 of 5) L1MEd|LINE|L1 -242687 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 577-52 chr12 116672042 116672534 + 2 NA Intergenic L1PB4|LINE|L1 65781 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 632 chr1 26611771 26612263 + 2 NA Intergenic Intergenic 57475 NR_031740 100302190 NR_031740 ENSG00000238705 MIR1976 hsa-mir-1976 microRNA 1976 ncRNA 576-185 chrX 46141645 46142185 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 185759 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 372-85 chr11 103056789 103057154 + 2 NA 3' UTR (NM_032299, exon 8 of 8) 3' UTR (NM_032299, exon 8 of 8) 35189 NM_001318739 84259 Hs.503716 NM_032299 ENSG00000137692 DCUN1D5 SCCRO5 defective in cullin neddylation 1 domain containing 5 protein-coding 207-253 chr5 178441180 178441351 + 2 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) 149128 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 204-161 chr2 200015651 200015818 + 2 NA Intergenic L1M5|LINE|L1 -60243 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 294-197 chr2 20555986 20556214 + 2 NA Intergenic HAL1ME|LINE|L1 36448 NR_046836 100874343 Hs.591546 NR_046836 ENSG00000231948 HS1BP3-IT1 - HS1BP3 intronic transcript 1 ncRNA 493-263 chr6 156113443 156113780 + 2 NA Intergenic MER33|DNA|hAT-Charlie 166814 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 545-109 chr2 52900104 52900464 + 2 NA Intergenic Intergenic -197669 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 435-23 chr10 9232222 9232570 + 2 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -43217 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 294-493 chr9 36884238 36884451 + 2 NA intron (NR_103999, intron 6 of 8) L1MB8|LINE|L1 9187 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 404-105 chr14 72767219 72767516 + 2 NA intron (NM_001280544, intron 2 of 9) L1MDa|LINE|L1 125282 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 322-49 chr10 16711898 16712174 + 2 NA intron (NM_152724, intron 6 of 7) L1MA6|LINE|L1 105388 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 511-241 chr7 4356459 4356892 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -221838 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 437-31 chr10 113045720 113045997 + 2 NA TTS (NR_132769) TTS (NR_132769) 503 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 377-78 chr11 130996119 130996399 + 2 NA Intergenic L1ME4a|LINE|L1 -79772 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 497-280 chr8 87681489 87681807 + 2 NA Intergenic Intergenic 192367 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 553-8 chr1 178210180 178210642 + 2 NA intron (NM_170692, intron 1 of 17) L1MEd|LINE|L1 116307 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 279-358 chr6 45767515 45767709 + 2 NA Intergenic L1MEf|LINE|L1 169985 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 288-62 chr11 21232984 21233227 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 563519 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 300-376 chr5 156434790 156434980 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 107721 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 268-15 chr1 118202799 118202959 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -17651 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 161-24 chr13 78772940 78773065 + 2 NA Intergenic Intergenic 67048 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 169-89 chr4 122251405 122251559 + 2 NA intron (NM_015312, intron 35 of 83) intron (NM_015312, intron 35 of 83) 80879 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 404-95 chr14 45308568 45308876 + 2 NA Intergenic Intergenic -55520 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 339-356 chr3 46778062 46778336 + 2 NA Intergenic L1MA9|LINE|L1 -21344 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 275-372 chr8 133829395 133829578 + 2 NA Intergenic MIRb|SINE|MIR -52134 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 198-196 chr5 60198342 60198483 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 174251 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 321-317 chr2 205467422 205467691 + 2 NA intron (NM_057177, intron 19 of 21) MER33|DNA|hAT-Charlie -214944 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 316-254 chr2 27618562 27618773 + 2 NA intron (NM_001271289, intron 12 of 12) L1MC4|LINE|L1 -9981 NM_001145048 11321 Hs.18259 NM_007266 ENSG00000198522 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 310-362 chr4 36504661 36504902 + 2 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) -78353 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 219-34 chr10 57890043 57890245 + 2 NA Intergenic Intergenic 377750 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 604-23 chr10 97973068 97973410 + 2 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) 57382 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 362-332 chr5 6972919 6973107 + 2 NA Intergenic Intergenic -145092 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 324-245 chr19 53140279 53140485 + 2 NA exon (NM_001172674, exon 5 of 5) exon (NM_001172674, exon 5 of 5) -7462 NM_001352131 55786 Hs.147765 NM_018355 ENSG00000170954 ZNF415 Pact|ZfLp zinc finger protein 415 protein-coding 195-258 chr9 86913247 86913406 + 2 NA Intergenic L1MB7|LINE|L1 34180 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 211-178 chr3 6944113 6944260 + 2 NA intron (NM_000844, intron 1 of 9) L1ME1|LINE|L1 -50169 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 763-63 chr8 79510884 79511290 + 2 NA Intergenic Intergenic -100030 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 121-48 chr4 114571700 114571779 + 2 NA Intergenic Intergenic -26663 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 381-230 chr20 62537048 62537318 + 2 NA Intergenic Intergenic -13270 NM_178463 128826 Hs.86507 NM_178463 MIR1-1HG C20orf166|MIR133A2HG MIR1-1 host gene protein-coding 316-493 chr6 131380588 131380772 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 130276 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 241-210 chr2 225986907 225987080 + 2 NA Intergenic Intergenic -155801 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 304-321 chr22 49591857 49592101 + 2 NA intron (NR_110523, intron 1 of 4) MER4D1|LTR|ERV1 -48513 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 304-13 chr1 91026143 91026423 + 2 NA Intergenic Intergenic -4028 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 233-387 chr8 126127895 126128115 + 2 NA Intergenic L1M5|LINE|L1 -176808 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 297-124 chr13 106129368 106129565 + 2 NA Intergenic Intergenic -247098 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 241-106 chr14 49096018 49096198 + 2 NA Intergenic Intergenic 490272 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 292-326 chr4 156737047 156737207 + 2 NA Intergenic Intergenic 234672 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 343-406 chr4 167144002 167144296 + 2 NA intron (NM_001204352, intron 2 of 11) intron (NM_001204352, intron 2 of 11) 90277 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 407-19 chr1 214425331 214425729 + 2 NA intron (NM_005401, intron 3 of 18) intron (NM_005401, intron 3 of 18) 126072 NM_005401 5784 Hs.193557 NM_005401 ENSG00000152104 PTPN14 CATLPH|PEZ|PTP36 protein tyrosine phosphatase non-receptor type 14 protein-coding 615-139 chr8 84542228 84542767 + 2 NA intron (NM_001354308, intron 3 of 9) THE1C|LTR|ERVL-MaLR 127013 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 283-18 chr1 118367176 118367325 + 2 NA Intergenic Intergenic -182022 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 546-27 chr10 108129352 108129736 + 2 NA Intergenic AluJr4|SINE|Alu -60251 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 477-71 chr12 12966145 12966604 + 2 NA intron (NR_149067, intron 1 of 2) intron (NR_149067, intron 1 of 2) -13463 NR_038920 100506314 Hs.127718 NR_038920 ENSG00000247498 GPRC5D-AS1 - GPRC5D and HEBP1 antisense RNA 1 ncRNA 324-79 chr11 10237390 10237600 + 2 NA intron (NM_030962, intron 1 of 39) L1MEg|LINE|L1 56712 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 534-257 chr8 88454628 88455000 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -127331 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 206-244 chr7 10026328 10026509 + 2 NA Intergenic Intergenic 392148 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 268-355 chr6 143121739 143121993 + 2 NA intron (NM_001366344, intron 2 of 6) intron (NM_001366344, intron 2 of 6) -4273 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 293-444 chr8 111620738 111620985 + 2 NA Intergenic Intergenic 244222 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 417-238 chr6 54023127 54023496 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) 4341 NM_001281746 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 121-61 chr7 71164898 71164974 + 2 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) 32792 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 181-133 chr5 150852668 150852787 + 2 NA intron (NM_001346557, intron 2 of 3) intron (NM_001346557, intron 2 of 3) 6204 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 409-24 chr10 41864579 41864830 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 503341 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 694-49 chr16 74055801 74056326 + 2 NA Intergenic Intergenic 159458 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 342-157 chr15 46971300 46971547 + 2 NA Intergenic L1PA16|LINE|L1 -212666 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 309-50 chr10 51031632 51031792 + 2 NA intron (NM_001098512, intron 1 of 17) MIRb|SINE|MIR 36840 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 314-307 chr2 145315686 145315875 + 2 NA Intergenic L2b|LINE|L2 647813 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 260-21 chr1 159554565 159554747 + 2 NA Intergenic Intergenic -18649 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 231-150 chr2 13488914 13489108 + 2 NA Intergenic MER57A-int|LTR|ERV1 -481998 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 407-182 chr22 49090587 49090895 + 2 NA Intergenic Intergenic 223971 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 299-463 chr8 121120926 121121084 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -308959 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 253-406 chr8 95935608 95935776 + 2 NA Intergenic MIRb|SINE|MIR 12656 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 470-235 chr6 22428796 22429120 + 2 NA Intergenic Intergenic -126123 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 358-511 chr9 28564277 28564512 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 154911 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 287-206 chr2 129267147 129267339 + 2 NA intron (NR_122042, intron 1 of 3) L1MA9|LINE|L1 6648 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 525-245 chr7 97328004 97328474 + 2 NA Intergenic MER57A-int|LTR|ERV1 211646 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 454-12 chr1 190248991 190249394 + 2 NA intron (NM_199051, intron 4 of 7) intron (NM_199051, intron 4 of 7) 226818 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 407-273 chr6 38902911 38903180 + 2 NA intron (NM_001371, intron 61 of 91) Tigger3c|DNA|TcMar-Tigger 50062 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 583-7 chr1 115502146 115502559 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -139618 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 349-16 chr1 73289522 73289722 + 2 NA Intergenic L1M4|LINE|L1 -16548 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 183-161 chr8 107275987 107276141 + 2 NA intron (NM_001199859, intron 7 of 8) intron (NM_001199859, intron 7 of 8) 60451 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 357-293 chr3 178695846 178696100 + 2 NA intron (NM_001278911, intron 1 of 4) THE1C|LTR|ERVL-MaLR 137123 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 339-342 chr22 43703186 43703515 + 2 NA intron (NM_198856, intron 8 of 29) L1M3b|LINE|L1 108955 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 372-531 chrX 127493317 127493662 + 2 NA Intergenic AluJr|SINE|Alu 558914 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 314-530 chr7 37905192 37905457 + 2 NA TTS (NM_003014) TTS (NM_003014) 11493 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 274-372 chr8 20605296 20605501 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 9528 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 308-182 chr17 50225712 50225962 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 11143 NR_110806 101927230 Hs.514326 NR_110806 LINC01969 - long intergenic non-protein coding RNA 1969 ncRNA 361-378 chr5 152404100 152404442 + 2 NA intron (NM_020167, intron 1 of 3) intron (NM_020167, intron 1 of 3) 1008 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 257-442 chr9 105317890 105318141 + 2 NA intron (NM_001330731, intron 3 of 15) (CTCTAA)n|Simple_repeat|Simple_repeat 73364 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 312-117 chr12 126183284 126183527 + 2 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR 87413 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 398-57 chr11 45524194 45524529 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 141261 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 475-267 chr7 107299621 107299948 + 2 NA intron (NM_181733, intron 11 of 20) L1ME1|LINE|L1 130781 NM_012257 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 1338-3 chr18 71889749 71890596 + 2 NA Intergenic Intergenic -107946 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 138-98 chr9 27532886 27532999 + 2 NA Intergenic Intergenic -3128 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 287-423 chr8 139073331 139073558 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -159403 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 554-46 chr11 37617480 37617939 + 2 NA Intergenic Intergenic -320892 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 282-500 chrX 93176863 93177061 + 2 NA Intergenic MER52-int|LTR|ERV1 -352059 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 447-98 chr17 70794782 70795172 + 2 NA Intergenic Intergenic 407202 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 312-470 chr7 5111757 5111995 + 2 NA Intergenic Intergenic 32670 NR_034163 645700 Hs.690815 NR_034163 ENSG00000159904 ZNF890P - zinc finger protein 890, pseudogene pseudo 233-123 chr16 81952140 81952256 + 2 NA intron (NM_002661, intron 31 of 32) intron (NM_002661, intron 31 of 32) 59272 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 239-302 chr5 26599846 26600030 + 2 NA Intergenic L1MB3|LINE|L1 438648 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 247-440 chrX 26766542 26766688 + 2 NA Intergenic L1PB4|LINE|L1 208278 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 265-280 chr4 111935746 111935972 + 2 NA Intergenic Intergenic -209595 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 229-258 chr3 111494535 111494686 + 2 NA Intergenic L1M7|LINE|L1 -47587 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 478-241 chr5 92894971 92895284 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 676216 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 666-108 chr7 33319840 33320418 + 2 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 190565 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 294-478 chr8 129172230 129172388 + 2 NA Intergenic Intergenic 68931 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 382-268 chr3 78418097 78418333 + 2 NA Intergenic Intergenic -369252 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 293-78 chr12 8549133 8549387 + 2 NA Intergenic MER105|DNA|hAT-Charlie -8355 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 451-110 chr2 48310344 48310730 + 2 NA Intergenic L1MEg|LINE|L1 -4145 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 307-34 chr1 234297848 234298107 + 2 NA intron (NM_173508, intron 3 of 7) L1MA10|LINE|L1 -8490 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 483-106 chr2 21486483 21486840 + 2 NA Intergenic LTR43|LTR|ERV1 223991 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 322-312 chr22 26722821 26723089 + 2 NA intron (NR_110543, intron 2 of 5) MIR|SINE|MIR 50112 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 459-95 chr15 95794216 95794574 + 2 NA Intergenic Intergenic 333446 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 283-66 chr10 96630126 96630318 + 2 NA intron (NM_152309, intron 8 of 16) intron (NM_152309, intron 8 of 16) -43210 NM_020123 56889 Hs.500674 NM_020123 ENSG00000077147 TM9SF3 EP70-P-iso|SMBP transmembrane 9 superfamily member 3 protein-coding 139-17 chr11 113500735 113500863 + 2 NA Intergenic AluJo|SINE|Alu -25401 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 415-112 chr19 51832353 51832608 + 2 NA intron (NR_163433, intron 9 of 11) AluJb|SINE|Alu 37323 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 149-85 chr5 122086775 122086877 + 2 NA Intergenic L1ME2|LINE|L1 -8567 NM_002317 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 270-337 chr6 126366356 126366597 + 2 NA intron (NR_104462, intron 2 of 3) intron (NR_104462, intron 2 of 3) 26361 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 350-194 chr18 60179619 60179809 + 2 NA Intergenic L1ME4c|LINE|L1 193061 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 202-115 chr2 37556792 37556982 + 2 NA Intergenic Intergenic 115312 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 353-7 chr1 49554257 49554495 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -82291 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 222-285 chr5 22363977 22364187 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -150232 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 491-148 chr21 14308068 14308529 + 2 NA Intergenic Intergenic 34499 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 384-273 chr4 122534395 122534633 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -78019 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 359-363 chr4 65006043 65006351 + 2 NA Intergenic Intergenic -1697 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 145-68 chr5 129626480 129626575 + 2 NA intron (NM_133638, intron 10 of 22) intron (NM_133638, intron 10 of 22) -121567 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 258-173 chr18 76277094 76277277 + 2 NA Intergenic Intergenic 67675 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 334-377 chr4 59116563 59116778 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 103097 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 406-223 chr5 27878095 27878412 + 2 NA Intergenic L1MC1|LINE|L1 405961 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 516-50 chr12 51754863 51755264 + 2 NA intron (NM_001369788, intron 14 of 25) MER6C|DNA|TcMar-Tigger 76854 NM_001013690 401720 Hs.648218 NM_001013690 ENSG00000261308 FIGNL2 - fidgetin like 2 protein-coding 457-236 chr7 71706257 71706665 + 2 NA intron (NM_022479, intron 9 of 10) intron (NM_022479, intron 9 of 10) -398691 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 263-340 chr5 155266434 155266643 + 2 NA Intergenic Intergenic 252783 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 423-313 chr9 107912980 107913332 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -423387 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 233-303 chr5 66504418 66504593 + 2 NA Intergenic LTR12C|LTR|ERV1 7099 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 514-8 chr1 105627304 105627754 + 2 NA Intergenic Intergenic -8594 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 527-57 chr12 15366523 15366869 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 44188 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 238-136 chr17 34191962 34192114 + 2 NA Intergenic L1ME3A|LINE|L1 -8406 NR_110748 101927239 Hs.603592 NR_110748 ENSG00000261156 LINC01989 - long intergenic non-protein coding RNA 1989 ncRNA 560-15 chr10 51496323 51496754 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 196965 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 501-281 chr9 117477890 117478246 + 2 NA Intergenic Intergenic -63011 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 188-15 chr10 35195577 35195736 + 2 NA promoter-TSS (NM_001267570) promoter-TSS (NM_001267570) -194 NM_001352445 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 182-113 chr3 180267001 180267140 + 2 NA Intergenic MIRc|SINE|MIR -147103 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 393-354 chr8 84870737 84870956 + 2 NA intron (NM_001287244, intron 5 of 7) intron (NM_001287244, intron 5 of 7) 164919 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 230-350 chr7 48215585 48215759 + 2 NA intron (NM_152701, intron 3 of 61) L1MB7|LINE|L1 44214 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 287-370 chr6 168490414 168490606 + 2 NA intron (NM_001166412, intron 1 of 12) intron (NM_001166412, intron 1 of 12) 49326 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 291-111 chr13 59080674 59080897 + 2 NA Intergenic Intergenic -847668 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 283-365 chr5 68325137 68325292 + 2 NA Intergenic Intergenic 32637 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 312-560 chrX 79015911 79016195 + 2 NA Intergenic L1PA13|LINE|L1 70662 NM_014499 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 237-266 chr4 64764072 64764222 + 2 NA Intergenic AluY|SINE|Alu 240353 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 510-84 chr14 88959603 88960003 + 2 NA Intergenic Intergenic 135152 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 335-473 chr6 129646358 129646569 + 2 NA intron (NM_033515, intron 1 of 14) Charlie1b|DNA|hAT-Charlie 63714 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 230-100 chr13 64380024 64380187 + 2 NA Intergenic L1MA4A|LINE|L1 -304094 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 329-241 chr18 62428415 62428739 + 2 NA Intergenic LTR16E2|LTR|ERVL -94448 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 338-264 chr2 115068487 115068777 + 2 NA intron (NM_001178037, intron 1 of 25) L1MA9|LINE|L1 4059 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 358-98 chr12 102351181 102351382 + 2 NA Intergenic MLT2A2|LTR|ERVL 127269 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 376-173 chr2 37789014 37789254 + 2 NA Intergenic L1M2|LINE|L1 40577 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 334-383 chr4 87720006 87720181 + 2 NA Intergenic L1MC4|LINE|L1 69813 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 313-349 chr3 89449682 89449983 + 2 NA intron (NM_005233, intron 14 of 16) intron (NM_005233, intron 14 of 16) 342211 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 179-105 chr6 141290794 141290967 + 2 NA Intergenic Intergenic 607066 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 449-146 chr20 63137457 63137878 + 2 NA Intergenic L1MB7|LINE|L1 -35348 NR_152601 768097 Hs.635159 NR_003245 ENSG00000231133 HAR1B HAR1R|LINC00065|NCRNA00065 highly accelerated region 1B ncRNA 361-32 chr10 14693460 14693695 + 2 NA intron (NM_031453, intron 1 of 4) L1MA9|LINE|L1 81320 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 556-46 chr12 14551449 14551905 + 2 NA intron (NM_024829, intron 2 of 10) X7B_LINE|LINE|CR1 -16055 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 370-452 chr8 128203930 128204196 + 2 NA Intergenic MIRb|SINE|MIR 53947 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 348-155 chr15 54092762 54093108 + 2 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 80287 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 718-88 chr7 126172861 126173261 + 2 NA Intergenic MER9a1|LTR|ERVK 885123 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 476-168 chr21 23247332 23247637 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 137351 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 321-438 chr4 167189164 167189398 + 2 NA intron (NM_001204352, intron 2 of 11) L1MCc|LINE|L1 45145 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 264-423 chr8 103983354 103983509 + 2 NA intron (NR_145711, intron 13 of 21) L1MA2|LINE|L1 164211 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 246-277 chr3 150258388 150258600 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 19794 NR_110167 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 377-281 chr4 30587994 30588286 + 2 NA Intergenic Intergenic -132229 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 578-72 chr17 72416932 72417348 + 2 NA intron (NR_036488, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 74329 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 395-244 chr4 12928040 12928283 + 2 NA Intergenic Intergenic 556179 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 169-5 chr1 177604179 177604308 + 2 NA Intergenic Intergenic -96281 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 112-10 chr12 120940087 120940172 + 2 NA Intergenic AluJo|SINE|Alu 32163 NR_024345 283460 Hs.612351 NR_024345 ENSG00000241388 HNF1A-AS1 C12orf27|HAS1|NCRNA00262 HNF1A antisense RNA 1 ncRNA 184-120 chr4 27205900 27206025 + 2 NA Intergenic Intergenic -11517 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 322-60 chr10 52825080 52825376 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -53528 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 346-259 chr2 142972258 142972472 + 2 NA intron (NM_001199241, intron 9 of 14) intron (NM_001199241, intron 9 of 14) 94701 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 371-69 chr11 77491152 77491447 + 2 NA Intergenic L1M1|LINE|L1 -17236 NM_002576 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 293-228 chr20 12110398 12110596 + 2 NA Intergenic Intergenic 192604 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 243-85 chr11 134179615 134179822 + 2 NA intron (NM_015261, intron 20 of 34) intron (NM_015261, intron 20 of 34) -28355 NR_145790 109623486 NR_145790 SNORD153 - small nucleolar RNA, C/D box 153 snoRNA 305-475 chr6 71739880 71740058 + 2 NA Intergenic Intergenic -146734 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 177-85 chr2 214959815 214959963 + 2 NA intron (NR_103740, intron 41 of 54) intron (NR_103740, intron 41 of 54) 72197 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 720 chr1 66716641 66717267 + 2 NA intron (NM_001350218, intron 16 of 22) L2a|LINE|L2 -35505 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 387-334 chr7 11881786 11882103 + 2 NA Intergenic Intergenic -49746 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 142-65 chr6 61221849 61221950 + 2 NA Intergenic MIRc|SINE|MIR -352231 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 317-291 chr22_KI270736v1_random 154858 155162 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 270-403 chr8 118677601 118677860 + 2 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -55767 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 475-57 chr12 26533191 26533609 + 2 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 299794 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 474-10 chr1 96975953 96976287 + 2 NA Intergenic Intergenic -119803 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 187-176 chr8 119265050 119265220 + 2 NA Intergenic Intergenic -18278 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 379-337 chr8 59803390 59803733 + 2 NA Intergenic Intergenic 477839 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 383-84 chr12 75703986 75704305 + 2 NA Intergenic Intergenic -192536 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 413-306 chr8 89031706 89032036 + 2 NA Intergenic L1PA16|LINE|L1 -704388 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 235-43 chr10 68109796 68109965 + 2 NA intron (NR_045663, intron 1 of 17) intron (NR_045663, intron 1 of 17) 392 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 677-81 chr8 14610789 14611277 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 242477 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 203-216 chr7 27228890 27229037 + 2 NA Intergenic MIR|SINE|MIR -13839 NM_001304519 2128 Hs.369879 NM_001989 ENSG00000106038 EVX1 EVX-1 even-skipped homeobox 1 protein-coding 243-384 chr6 46503576 46503740 + 2 NA intron (NR_125837, intron 1 of 2) (TTTCA)n|Simple_repeat|Simple_repeat -11591 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 338-266 chr2 117147884 117148106 + 2 NA Intergenic L1M4a1|LINE|L1 -666696 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 230-203 chr20 17494618 17494834 + 2 NA exon (NM_001278608, exon 10 of 10) exon (NM_001278608, exon 10 of 10) 36653 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 242-29 chr1 244576195 244576385 + 2 NA intron (NM_001130957, intron 11 of 21) HERVIP10FH-int|LTR|ERV1 -76758 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 370-119 chr12 104541926 104542246 + 2 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) -49547 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 331-265 chr2 66402560 66402767 + 2 NA Intergenic L1MC3|LINE|L1 19357 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 296-181 chr17 22733850 22734066 + 2 NA Intergenic ALR/Alpha|Satellite|centr 210847 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 378-234 chr2 103827122 103827364 + 2 NA Intergenic L1PA16|LINE|L1 581089 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 331-43 chr10 15448973 15449151 + 2 NA Intergenic LTR9|LTR|ERV1 -77773 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 553-22 chr10 93148180 93148542 + 2 NA Intergenic Intergenic 74468 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 361-65 chr11 12016603 12016956 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -7409 NM_013253 27122 Hs.292156 NM_013253 ENSG00000050165 DKK3 REIC|RIG dickkopf WNT signaling pathway inhibitor 3 protein-coding 496-224 chr5 160727662 160728078 + 2 NA intron (NM_001366652, intron 2 of 24) LTR34|LTR|ERV1 -42479 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 209-221 chr4 41089301 41089507 + 2 NA intron (NM_173075, intron 3 of 16) Tigger4a|DNA|TcMar-Tigger 125138 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 322-546 chr8 129546231 129546546 + 2 NA intron (NR_130917, intron 1 of 3) L2c|LINE|L2 28630 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 203-248 chr9 33836739 33836869 + 2 NA intron (NM_017811, intron 1 of 4) HAL1|LINE|L1 19644 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 212-331 chr8 123689261 123689420 + 2 NA intron (NM_001003954, intron 9 of 11) intron (NM_001003954, intron 9 of 11) -35539 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 352-426 chr5 110666376 110666650 + 2 NA intron (NM_001039763, intron 2 of 13) intron (NM_001039763, intron 2 of 13) 60158 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 219-299 chr5 153861916 153862093 + 2 NA Intergenic Intergenic 36983 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 314-615 chr9 102714871 102715137 + 2 NA Intergenic Intergenic 195367 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 267-418 chr8 63170398 63170585 + 2 NA intron (NM_001277816, intron 2 of 3) intron (NM_001277816, intron 2 of 3) 1488 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 362-131 chr12 133125053 133125250 + 2 NA intron (NM_001277291, intron 1 of 1) L1MC5|LINE|L1 5322 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 432-236 chr5 156472972 156473356 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 146000 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 240-332 chr4 127309584 127309791 + 2 NA Intergenic Intergenic -323270 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 126-41 chr3 157817438 157817551 + 2 NA Intergenic Intergenic 274150 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 454-48 chr11 14347673 14348071 + 2 NA intron (NM_001177314, intron 1 of 5) intron (NM_001177314, intron 1 of 5) 10613 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 346-372 chr4 188935531 188935851 + 2 NA Intergenic Intergenic 159034 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 356-354 chr4 37762464 37762708 + 2 NA Intergenic Intergenic -64100 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 860-37 chr5 9697447 9698167 + 2 NA intron (NR_027112, intron 9 of 12) L1M5|LINE|L1 -67456 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 370-214 chr2 13282150 13282472 + 2 NA Intergenic L2b|LINE|L2 -275298 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 402-3 chr1 18620942 18621330 + 2 NA Intergenic Intergenic -9710 NM_001135254 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 287-377 chr7 29259393 29259544 + 2 NA intron (NM_001293072, intron 1 of 12) L1MC4a|LINE|L1 -50498 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 379-245 chr4 100474235 100474461 + 2 NA intron (NM_001159694, intron 3 of 10) L1MB7|LINE|L1 43674 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 284-107 chr13 73426345 73426552 + 2 NA Intergenic Intergenic -137796 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 336-159 chr14 40130892 40131123 + 2 NA Intergenic Intergenic -698507 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 332-576 chr9 111990404 111990663 + 2 NA Intergenic Intergenic 58433 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 339-526 chr7 33822841 33823039 + 2 NA Intergenic L3|LINE|CR1 -81975 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 297-229 chr2 138630771 138630980 + 2 NA Intergenic L1M4|LINE|L1 129105 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 279-313 chr5 17318729 17318973 + 2 NA Intergenic Intergenic 68459 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 234-263 chr4 6434970 6435190 + 2 NA intron (NM_001206994, intron 2 of 9) L1M7|LINE|L1 -13962 NM_001206996 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 348-297 chr3 69577744 69577977 + 2 NA Intergenic MIRb|SINE|MIR -161604 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 645-49 chr19 24401153 24401613 + 2 NA Intergenic ALR/Alpha|Satellite|centr -237936 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 235-328 chr7 48682016 48682192 + 2 NA Intergenic L2a|LINE|L2 -242443 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 297-259 chr20 14617499 14617710 + 2 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 63220 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 356-24 chr1 183763429 183763618 + 2 NA intron (NM_001297669, intron 3 of 18) L2c|LINE|L2 -41597 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 342-499 chr7 99927457 99927654 + 2 NA intron (NM_181538, intron 1 of 1) intron (NM_181538, intron 1 of 1) 2065 NM_181538 349149 Hs.647524 NM_181538 ENSG00000176402 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein gamma 3 protein-coding 334-375 chr4 45986827 45987082 + 2 NA Intergenic L1PA13|LINE|L1 137100 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 388-314 chr6 140522499 140522828 + 2 NA Intergenic Intergenic -161151 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 277-422 chr8 115987551 115987713 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) -318657 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 190-168 chr7 137198623 137198776 + 2 NA Intergenic L1MD1|LINE|L1 -34358 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 300-288 chr3 109175648 109175896 + 2 NA Intergenic Intergenic -2393 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 459-325 chr9 18767421 18767790 + 2 NA intron (NM_001040272, intron 16 of 28) intron (NM_001040272, intron 16 of 28) 194299 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 444-118 chr2 59102034 59102403 + 2 NA Intergenic Intergenic -115490 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 344-411 chr6 13245806 13246102 + 2 NA intron (NM_001322308, intron 9 of 13) MIR3|SINE|MIR 37488 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 273-157 chr16 50083116 50083340 + 2 NA intron (NR_138092, intron 8 of 15) intron (NR_138092, intron 8 of 15) 17258 NM_001329731 55027 Hs.733027 NM_017939 ENSG00000155393 HEATR3 SYO1 HEAT repeat containing 3 protein-coding 519-5 chr1 65473108 65473477 + 2 NA intron (NM_001003679, intron 2 of 19) MIRb|SINE|MIR -52359 NM_001198687 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 241-57 chr11 21409875 21410080 + 2 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 740391 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 246-122 chr14 72000599 72000822 + 2 NA intron (NM_001370288, intron 2 of 16) L2|LINE|L2 67183 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 247-317 chr5 23251196 23251372 + 2 NA Intergenic Intergenic -256325 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 268-286 chr4 91293411 91293588 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 983803 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 271-72 chr11 54753339 54753504 + 2 NA Intergenic ALR/Alpha|Satellite|centr 46589 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 337-205 chr17 63125374 63125703 + 2 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 159303 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 271-356 chr5 112660938 112661160 + 2 NA intron (NR_104673, intron 1 of 2) L1PA15|LINE|L1 21839 NR_104673 102467216 Hs.174158 NR_104673 LOC102467216 - uncharacterized LOC102467216 ncRNA 214-4 chr1 32112419 32112540 + 2 NA intron (NM_012316, intron 1 of 13) Tigger1|DNA|TcMar-Tigger 4423 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 338-486 chr7 13879791 13880067 + 2 NA Intergenic Intergenic 106585 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 431-178 chr3 73302837 73303160 + 2 NA Intergenic Intergenic 130997 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 338-77 chr10 106289080 106289298 + 2 NA Intergenic Intergenic 149024 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 424-138 chr2 116323323 116323664 + 2 NA Intergenic Intergenic 979678 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 308-521 chr8 134023200 134023423 + 2 NA Intergenic Intergenic 136815 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 378-214 chr2 15639512 15639884 + 2 NA Intergenic AluJr|SINE|Alu 47830 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 296-95 chr12 18377062 18377232 + 2 NA intron (NM_001288774, intron 13 of 32) intron (NM_001288774, intron 13 of 32) 115607 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 312-509 chr8 46496656 46496885 + 2 NA Intergenic ALR/Alpha|Satellite|centr 120873 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 214-299 chr7 46538749 46538932 + 2 NA Intergenic Intergenic 158282 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 290-331 chr5 26995728 26996006 + 2 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 42719 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 335-70 chr10 104839801 104839975 + 2 NA intron (NM_014978, intron 1 of 26) LTR16B2|LTR|ERVL -173672 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 379-136 chr19 12375833 12376163 + 2 NA Intergenic L1M4|LINE|L1 -10315 NM_030824 79973 Hs.253193 NM_030824 ENSG00000198342 ZNF442 - zinc finger protein 442 protein-coding 465-14 chr1 240035935 240036361 + 2 NA Intergenic L1MEc|LINE|L1 28624 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 385-175 chr2 79842921 79843197 + 2 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 23524 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 244-105 chr15 27055393 27055591 + 2 NA intron (NM_001270873, intron 3 of 5) Tigger4b|DNA|TcMar-Tigger 84311 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 220-28 chr1 204219727 204219883 + 2 NA 3' UTR (NM_014935, exon 23 of 23) 3' UTR (NM_014935, exon 23 of 23) -5817 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 225-85 chr14 31960069 31960271 + 2 NA Intergenic Arthur1C|DNA|hAT-Tip100 15317 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 557-13 chr1 247580663 247581155 + 2 NA Intergenic L1PBa|LINE|L1 -7451 NM_001001915 81470 Hs.690208 NM_001001915 ENSG00000177489 OR2G2 OR1-32 olfactory receptor family 2 subfamily G member 2 protein-coding 260-168 chr17 34749125 34749370 + 2 NA Intergenic L1ME1|LINE|L1 168498 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 321-509 chr6 154036037 154036303 + 2 NA intron (NM_001145280, intron 1 of 3) intron (NM_001145280, intron 1 of 3) -2932 NM_001008504 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 365-276 chr3 192678354 192678689 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 49020 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 411-169 chr21 35150745 35151048 + 2 NA Intergenic Intergenic -101598 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 315-456 chr7 143352110 143352270 + 2 NA TTS (NM_000083) TTS (NM_000083) 9890 NM_014690 9715 Hs.648908 NM_014690 ENSG00000159784 FAM131B - family with sequence similarity 131 member B protein-coding 614-29 chr13 92835764 92836181 + 2 NA intron (NM_004466, intron 7 of 7) L1ME3G|LINE|L1 -114358 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 265-267 chr4 61725961 61726133 + 2 NA intron (NM_001371342, intron 4 of 20) Tigger4a|DNA|TcMar-Tigger 435718 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 250-217 chr2 114046744 114046936 + 2 NA Intergenic Intergenic -66856 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 248-195 chr2 105444266 105444498 + 2 NA Intergenic Intergenic -5869 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 217-336 chr6 160197850 160198002 + 2 NA Intergenic L1MA5A|LINE|L1 60895 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 413-269 chr6 137594020 137594259 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -71507 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 293-351 chr5 123711952 123712188 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 166653 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 549-148 chr4 38254097 38254502 + 2 NA Intergenic Intergenic -112615 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 573-88 chr19 28343817 28344305 + 2 NA Intergenic Intergenic -262627 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 604-28 chr11 42947964 42948419 + 2 NA Intergenic Intergenic 321178 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 251-228 chr3 28560567 28560747 + 2 NA Intergenic L3b|LINE|CR1 -14621 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 665-88 chr7 11864564 11865102 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -32635 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 112-27 chr20 44045556 44045624 + 2 NA intron (NM_001098797, intron 3 of 8) L1M5|LINE|L1 99694 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 320-427 chr5 27814797 27815105 + 2 NA Intergenic L1MDa|LINE|L1 342659 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 349-88 chr10 122579363 122579573 + 2 NA intron (NM_004406, intron 9 of 39) intron (NM_004406, intron 9 of 39) 18714 NM_001320644 1755 Hs.279611 NM_004406 ENSG00000187908 DMBT1 GP340|SAG|SALSA|muclin deleted in malignant brain tumors 1 protein-coding 418-204 chr4 189061025 189061236 + 2 NA Intergenic Intergenic 284473 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 182-42 chr12 124065461 124065589 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 92310 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 304-389 chr4 109882540 109882748 + 2 NA Intergenic L3|LINE|CR1 -30239 NM_001357021 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 305-162 chr14 97989313 97989548 + 2 NA Intergenic Intergenic -11306 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 169-117 chr7 31082695 31082819 + 2 NA intron (NM_001199636, intron 6 of 16) intron (NM_001199636, intron 6 of 16) 30296 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 411-275 chr7 80395497 80395828 + 2 NA Intergenic Intergenic -21223 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 304-22 chr1 166131583 166131745 + 2 NA intron (NR_163271, intron 1 of 2) intron (NR_163271, intron 1 of 2) 23134 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 367-129 chr14 81858298 81858504 + 2 NA Intergenic Intergenic -115263 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 271-297 chr4 31000593 31000820 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -170438 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 228-211 chr3 25484657 25484854 + 2 NA intron (NR_110892, intron 2 of 6) MER58B|DNA|hAT-Charlie 26445 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 278-17 chr1 177771824 177772048 + 2 NA Intergenic Intergenic 71412 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 264-269 chr3 38914305 38914493 + 2 NA intron (NM_014139, intron 7 of 25) L1PREC2|LINE|L1 36162 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 153-4 chr1 63250242 63250371 + 2 NA intron (NR_038252, intron 4 of 11) intron (NR_038252, intron 4 of 11) 66951 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 450-289 chr7 133418631 133418881 + 2 NA intron (NM_021807, intron 7 of 17) intron (NM_021807, intron 7 of 17) 127875 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 380-9 chr1 54829341 54829719 + 2 NA intron (NM_001110533, intron 9 of 9) intron (NM_001110533, intron 9 of 9) 23467 NM_152607 163747 Hs.376018 NM_152607 ENSG00000162398 LEXM C1orf177|LEM lymphocyte expansion molecule protein-coding 130-63 chr4 95620667 95620747 + 2 NA Intergenic Intergenic -71734 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 293-289 chr4 19992739 19992954 + 2 NA Intergenic Intergenic -259059 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 267-222 chr2 226093692 226093916 + 2 NA Intergenic L1P4a|LINE|L1 -48990 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 259-425 chr9 4001097 4001319 + 2 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 102562 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 250-428 chr8 88217187 88217354 + 2 NA intron (NM_005941, intron 1 of 9) L1MC4|LINE|L1 110213 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 469-294 chr8 139599090 139599406 + 2 NA Intergenic Intergenic 103875 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 240-75 chr11 35260284 35260486 + 2 NA 3' UTR (NM_004171, exon 11 of 11) 3' UTR (NM_004171, exon 11 of 11) 97435 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 201-117 chr2 41312338 41312532 + 2 NA Intergenic L1ME1|LINE|L1 -565120 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 389-67 chr11 104540726 104540955 + 2 NA Intergenic Intergenic 68462 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 590-118 chr4 18456913 18457236 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger -435199 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 316-479 chr6 40657926 40658105 + 2 NA Intergenic MIR1_Amn|SINE|MIR -70651 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 309-416 chr5 3858689 3858939 + 2 NA Intergenic Intergenic 262982 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 341-515 chr8 54230499 54230712 + 2 NA Intergenic Intergenic 95364 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 408-23 chr1 172511395 172511727 + 2 NA Intergenic Intergenic -20788 NM_016227 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 331-147 chr14 28540978 28541251 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 224205 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 230-61 chr11 79721288 79721473 + 2 NA Intergenic Intergenic -280350 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 321-562 chr8 88784823 88785007 + 2 NA Intergenic L1PA4|LINE|L1 -457432 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 308-217 chr2 26436085 26436356 + 2 NA intron (NM_145038, intron 7 of 16) L1PA15|LINE|L1 34300 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 504-211 chr5 40349446 40349807 + 2 NA Intergenic L1MA2|LINE|L1 297335 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 386-358 chr8 117770214 117770509 + 2 NA Intergenic L1MEg|LINE|L1 150552 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 376-432 chr9 88254095 88254307 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -115720 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 426-44 chr11 55907828 55908165 + 2 NA Intergenic Intergenic 6586 NM_001001960 390148 Hs.554526 NM_001001960 ENSG00000187612 OR5W2 OR5W2P|OR5W3P olfactory receptor family 5 subfamily W member 2 protein-coding 130-49 chr21 23605852 23605930 + 2 NA Intergenic L1M2|LINE|L1 -221056 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 332-466 chr7 725361 725543 + 2 NA intron (NM_001164759, intron 1 of 10) intron (NM_001164759, intron 1 of 10) -1247 NM_017802 54919 Hs.535896 NM_017802 ENSG00000164818 DNAAF5 CILD18|HEATR2 dynein axonemal assembly factor 5 protein-coding 567-21 chr10 28089504 28089913 + 2 NA exon (NM_001318170, exon 12 of 17) exon (NM_001318170, exon 12 of 17) -16330 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 389-38 chr10 75595287 75595529 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 42950 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 305-314 chr21 15489230 15489413 + 2 NA Intergenic (AAATA)n|Simple_repeat|Simple_repeat -240613 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 496-267 chr7 94494654 94495001 + 2 NA Intergenic LTR37-int|LTR|ERV1 -14982 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 345-317 chr21 20474854 20475098 + 2 NA Intergenic Intergenic -216291 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 283-231 chr2 59971597 59971790 + 2 NA Intergenic Intergenic 411343 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 364-482 chrX 81150164 81150426 + 2 NA intron (NM_030763, intron 1 of 6) AluSq2|SINE|Alu 51618 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 255-408 chr8 15963207 15963404 + 2 NA Intergenic Intergenic 222967 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 552-164 chr4 185533431 185533871 + 2 NA intron (NM_001114107, intron 1 of 6) intron (NM_001114107, intron 1 of 6) 1907 NM_014476 27295 Hs.701364 NM_014476 ENSG00000154553 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 412-282 chr6 84650644 84651023 + 2 NA Intergenic Intergenic -38625 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 392-137 chr2 17049835 17050068 + 2 NA Intergenic Intergenic -384117 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 381-354 chr7 55241925 55242198 + 2 NA intron (NR_110426, intron 2 of 3) L1MC4|LINE|L1 13574 NR_110426 102725541 Hs.590524 NR_110426 ELDR Fabl|LINC01156 EGFR long non-coding downstream RNA ncRNA 230-29 chr1 227341505 227341662 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -23091 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 360-250 chr2 199176623 199176895 + 2 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat 281180 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 387-59 chr11 50424517 50424863 + 2 NA Intergenic ALR/Alpha|Satellite|centr 15543 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 253-224 chr20 41639577 41639761 + 2 NA Intergenic Intergenic -21292 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 344-289 chr21 29197986 29198198 + 2 NA intron (NR_027072, intron 1 of 1) L1M4|LINE|L1 4598 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 411-166 chr20 55868243 55868581 + 2 NA Intergenic L1PA16|LINE|L1 137107 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 752-17 chr14 45490124 45490731 + 2 NA Intergenic L1MA2|LINE|L1 225175 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 200-120 chr2 16019078 16019192 + 2 NA Intergenic Intergenic -31292 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 316-534 chr8 27219370 27219581 + 2 NA Intergenic Intergenic 38929 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 210-134 chr2 98207882 98208049 + 2 NA intron (NR_144297, intron 12 of 18) intron (NR_144297, intron 12 of 18) 58432 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 202-216 chr5 153685680 153685875 + 2 NA intron (NM_000827, intron 7 of 15) intron (NM_000827, intron 7 of 15) 193605 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 310-314 chr3 5630774 5631013 + 2 NA Intergenic Intergenic -380638 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 576-44 chr14 37573067 37573582 + 2 NA Intergenic L3|LINE|CR1 21925 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 273-300 chr3 105074477 105074666 + 2 NA Intergenic L1ME1|LINE|L1 -292142 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 149-22 chr12 46142912 46142996 + 2 NA Intergenic L1MA3|LINE|L1 123562 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 317-297 chr3 39756214 39756373 + 2 NA Intergenic Intergenic -52621 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 244-335 chr7 9916731 9916904 + 2 NA Intergenic Intergenic 282547 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 326-27 chr1 113566285 113566606 + 2 NA intron (NM_001142782, intron 2 of 20) L1ME3B|LINE|L1 175930 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 187-131 chr4 83322363 83322488 + 2 NA intron (NM_001098540, intron 1 of 11) intron (NM_001098540, intron 1 of 11) 12388 NM_001199830 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 422-33 chr10 62995153 62995434 + 2 NA Intergenic Intergenic -137954 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 519-230 chr8 71510685 71511120 + 2 NA intron (NM_001370334, intron 2 of 19) (TCTT)n|Simple_repeat|Simple_repeat 36802 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 156-80 chr5 32844488 32844637 + 2 NA Intergenic Intergenic -102881 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 275-19 chr1 181388137 181388286 + 2 NA Intergenic Intergenic -95306 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 557-166 chr5 165897455 165897882 + 2 NA Intergenic MIRb|SINE|MIR 1028702 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 307-150 chr14 78427091 78427308 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 23480 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 330-58 chr10 37458842 37459111 + 2 NA Intergenic Intergenic 143955 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 485-16 chr1 187949961 187950278 + 2 NA Intergenic L2a|LINE|L2 506491 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 458-32 chr10 126722980 126723253 + 2 NA Intergenic Intergenic -52606 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 286-486 chrX 41898936 41899159 + 2 NA intron (NM_003688, intron 1 of 26) L1M2|LINE|L1 23987 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 242-147 chr18 11340322 11340496 + 2 NA Intergenic Intergenic -114069 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 323-447 chr6 6512743 6512920 + 2 NA intron (NR_026970, intron 3 of 7) HERVL40-int|LTR|ERVL -75889 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 427-266 chr8 120209719 120210028 + 2 NA exon (NM_021110, exon 12 of 48) exon (NM_021110, exon 12 of 48) 84771 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 347-44 chr10 19914699 19914976 + 2 NA intron (NM_032812, intron 1 of 13) L1MDa|LINE|L1 98405 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 485-200 chr4 41820453 41820910 + 2 NA Intergenic Intergenic 61930 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 329-453 chr5 38712681 38712877 + 2 NA intron (NR_104631, intron 3 of 4) intron (NR_104631, intron 3 of 4) 7494 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 338-105 chr11 82599325 82599524 + 2 NA Intergenic MIRb|SINE|MIR 134440 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 616-95 chr20 34678688 34679143 + 2 NA Intergenic Intergenic -1630 NM_080476 128869 Hs.253319 NM_080476 ENSG00000101464 PIGU CDC91L1|GAB1 phosphatidylinositol glycan anchor biosynthesis class U protein-coding 298-61 chr10 118215788 118216062 + 2 NA Intergenic Intergenic 126399 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 401-115 chr16 12746613 12746989 + 2 NA intron (NM_018340, intron 2 of 3) L1MEc|LINE|L1 26480 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 373-395 chr8 6687868 6688161 + 2 NA intron (NR_125386, intron 1 of 4) L1MEf|LINE|L1 20195 NR_125386 100507530 Hs.490892 NR_125386 MCPH1-AS1 - MCPH1 antisense RNA 1 ncRNA 256-96 chr12 129466964 129467136 + 2 NA intron (NM_133448, intron 3 of 8) L2c|LINE|L2 258449 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 474-195 chr4 10140353 10140673 + 2 NA Intergenic Intergenic -23714 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 243-162 chr17 29805700 29805914 + 2 NA intron (NM_033389, intron 1 of 14) intron (NM_033389, intron 1 of 14) -44375 NM_001282131 85464 Hs.654754 NM_033389 ENSG00000141298 SSH2 SSH-2|SSH-2L slingshot protein phosphatase 2 protein-coding 435-152 chr3 72193992 72194276 + 2 NA Intergenic Intergenic 42877 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 361-395 chr6 119577279 119577585 + 2 NA intron (NR_134600, intron 2 of 3) L1MB1|LINE|L1 27624 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 326-138 chr13 71317733 71317979 + 2 NA Intergenic Intergenic 302715 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 208-201 chr5 22850074 22850222 + 2 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 3196 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 250-72 chr11 84869657 84869880 + 2 NA intron (NM_001351274, intron 5 of 26) L2c|LINE|L2 53653 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 416-224 chr3 89948036 89948302 + 2 NA Intergenic L1PBb|LINE|L1 840548 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 538-144 chr22 48220407 48220922 + 2 NA Intergenic L1MEc|LINE|L1 -53700 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 294-118 chr14 62518063 62518303 + 2 NA Intergenic Intergenic -378210 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 240-409 chr8 51562409 51562603 + 2 NA intron (NM_144651, intron 3 of 22) intron (NM_144651, intron 3 of 22) 246939 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 345-283 chr2 128033062 128033306 + 2 NA Intergenic Intergenic -5125 NM_001330299 79595 Hs.32995 NM_024545 ENSG00000136715 SAP130 - Sin3A associated protein 130 protein-coding 211-91 chr14 92238483 92238668 + 2 NA Intergenic FLAM_A|SINE|Alu -84006 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 395-359 chr9 99405982 99406248 + 2 NA Intergenic Intergenic -30858 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 232-157 chr2 11776222 11776385 + 2 NA intron (NM_001349203, intron 6 of 20) intron (NM_001349203, intron 6 of 20) 8859 NR_036071 100422862 NR_036071 ENSG00000265056 MIR548S - microRNA 548s ncRNA 408-334 chr8 69154951 69155233 + 2 NA Intergenic Intergenic -50902 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 331-170 chr15 27274174 27274441 + 2 NA intron (NM_001270873, intron 3 of 5) MSTB2|LTR|ERVL-MaLR -112988 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 287-170 chr18 14001874 14002118 + 2 NA Intergenic Intergenic -86289 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 314-347 chr21 20115505 20115811 + 2 NA Intergenic L1PBa|LINE|L1 143027 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 185-6 chr1 163639062 163639220 + 2 NA Intergenic L1MC1|LINE|L1 -215950 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 285-48 chr10 107483462 107483708 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -318879 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 332-308 chr22 19552472 19552793 + 2 NA Intergenic L1MB5|LINE|L1 14207 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 229-48 chr10 114379563 114379779 + 2 NA intron (NM_001351073, intron 1 of 19) intron (NM_001351073, intron 1 of 19) 24831 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 260-270 chr3 70926357 70926554 + 2 NA Intergenic L2c|LINE|L2 138469 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 259-303 chr4 181538200 181538360 + 2 NA Intergenic Intergenic -273251 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 282-411 chr6 124606576 124606835 + 2 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 323700 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 289-300 chr3 51112302 51112492 + 2 NA intron (NM_004947, intron 9 of 52) L1ME3|LINE|L1 -272894 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 348-525 chr8 102715092 102715435 + 2 NA Intergenic Intergenic 59015 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 143-28 chr14 104911661 104911785 + 2 NA Intergenic L1MEd|LINE|L1 -13156 NM_001308174 122618 Hs.407101 NM_138790 ENSG00000166428 PLD4 C14orf175 phospholipase D family member 4 protein-coding 233-96 chr14 65881849 65882075 + 2 NA Intergenic L1MA4|LINE|L1 410860 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 385-341 chr6 133592329 133592635 + 2 NA intron (NR_109982, intron 4 of 8) intron (NR_109982, intron 4 of 8) -228665 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 461-92 chr16 6327695 6328112 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 308200 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 392-63 chr12 41782616 41782946 + 2 NA Intergenic HAL1ME|LINE|L1 18592 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 380-407 chr8 126755390 126755692 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -197063 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 411-320 chrX 55581601 55581859 + 2 NA Intergenic L1PB4|LINE|L1 -41670 NM_198451 139628 Hs.364260 NM_198451 ENSG00000189299 FOXR2 FOXN6 forkhead box R2 protein-coding 577-78 chr18 22573033 22573399 + 2 NA Intergenic L1ME4a|LINE|L1 -155301 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 364-243 chr20 5348078 5348385 + 2 NA Intergenic Intergenic -31499 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 639-80 chr3 94483512 94483918 + 2 NA Intergenic Intergenic 420654 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 250-6 chr1 65242599 65242835 + 2 NA Intergenic Intergenic -21977 NM_001256865 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 629-90 chr4 107269036 107269558 + 2 NA Intergenic MER52A|LTR|ERV1 -232984 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 140-76 chr8 59420683 59420790 + 2 NA Intergenic L1ME1|LINE|L1 301526 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 263-347 chr5 180916379 180916603 + 2 NA intron (NM_001159710, intron 2 of 6) L1MA10|LINE|L1 6927 NM_001159710 79908 Hs.189109 NM_024850 ENSG00000113303 BTNL8 BTN9.2 butyrophilin like 8 protein-coding 257-441 chr9 104330901 104331082 + 2 NA Intergenic L1M5|LINE|L1 60762 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 403-326 chr9 103105338 103105690 + 2 NA Intergenic AluSx3|SINE|Alu 110181 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 325-7 chr1 57805405 57805662 + 2 NA intron (NM_001353980, intron 3 of 5) MIRc|SINE|MIR -55048 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 312-176 chr16 35379596 35379806 + 2 NA intron (NR_027079, intron 3 of 8) HERVL40-int|LTR|ERVL 16170 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 360-75 chr11 118853527 118853843 + 2 NA Intergenic AluSx3|SINE|Alu -30207 NM_001716 643 Hs.113916 NM_001716 ENSG00000160683 CXCR5 BLR1|CD185|MDR15 C-X-C motif chemokine receptor 5 protein-coding 596-36 chr11 58425584 58425999 + 2 NA Intergenic Intergenic -2478 NM_001005566 390190 Hs.553753 NM_001005566 ENSG00000172365 OR5B2 OR11-240|OST073 olfactory receptor family 5 subfamily B member 2 protein-coding 292-316 chr4 60122747 60122925 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -799783 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 336-529 chr7 143459223 143459439 + 2 NA intron (NR_033897, intron 2 of 4) MLT1A0|LTR|ERVL-MaLR 15878 NM_177437 338398 Hs.688222 NM_177437 ENSG00000185899 TAS2R60 T2R56|T2R60 taste 2 receptor member 60 protein-coding 562-181 chr5 114874810 114875231 + 2 NA Intergenic Intergenic -101607 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 269-341 chr6 48671042 48671241 + 2 NA Intergenic L2c|LINE|L2 -602452 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 481-10 chr1 167031912 167032307 + 2 NA Intergenic Intergenic 42829 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 242-168 chr2 33698077 33698251 + 2 NA Intergenic L1M4|LINE|L1 -8722 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 333-132 chr13 56522633 56522910 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -618147 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 468-45 chr11 39796075 39796497 + 2 NA Intergenic L2a|LINE|L2 496844 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 250-288 chr3 135762378 135762559 + 2 NA Intergenic MamGypLTR1d|LTR|Gypsy -203260 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 158-95 chr5 129245228 129245353 + 2 NA Intergenic Intergenic 147602 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 476-137 chr2 53119584 53119947 + 2 NA Intergenic L1ME3A|LINE|L1 -417150 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 654-7 chr1 112334519 112335027 + 2 NA Intergenic AluJb|SINE|Alu -61441 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 289-325 chr3 186355214 186355466 + 2 NA intron (NM_001346, intron 1 of 24) (CCA)n|Simple_repeat|Simple_repeat 6894 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 284-333 chr5 136559679 136559942 + 2 NA Intergenic Intergenic -194334 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 353-153 chr15 24620324 24620562 + 2 NA Intergenic L1PA13|LINE|L1 -54951 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 298-373 chr5 100880810 100880972 + 2 NA intron (NM_005668, intron 3 of 4) intron (NM_005668, intron 3 of 4) 22391 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 421-177 chr22 34475473 34475749 + 2 NA Intergenic Intergenic 522305 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 227-171 chr2 82065552 82065709 + 2 NA Intergenic MER89|LTR|ERV1 -598684 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 287-292 chr4 134149791 134150010 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 51889 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 416-23 chr1 219033785 219034056 + 2 NA intron (NR_031644, intron 6 of 6) HAL1|LINE|L1 -115409 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 296-269 chr20 51268468 51268639 + 2 NA Intergenic Intergenic 184424 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 243-59 chr10 100591750 100591980 + 2 NA Intergenic L1MD1|LINE|L1 55922 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 356-258 chr2 117894699 117894904 + 2 NA Intergenic L1MC1|LINE|L1 61070 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 334-36 chr1 212492334 212492623 + 2 NA Intergenic L1ME4b|LINE|L1 -53216 NR_125985 101929565 NR_125985 ENSG00000228067 LINC01740 - long intergenic non-protein coding RNA 1740 ncRNA 313-205 chr17 71008309 71008535 + 2 NA Intergenic Intergenic 193757 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 387-184 chr2 126538705 126539020 + 2 NA Intergenic L1MCa|LINE|L1 -117073 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 507-37 chr10 99071505 99071864 + 2 NA intron (NM_021828, intron 3 of 11) L1MB1|LINE|L1 -147116 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 314-468 chr5 89063203 89063432 + 2 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -159212 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 598-156 chrUn_GL000216v2 44291 44727 + 2 NA NA (CATTC)n|Satellite|Satellite NA NA 203-116 chr2 101097342 101097492 + 2 NA intron (NM_001102426, intron 1 of 19) L1MC3|LINE|L1 54030 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 204-111 chr16 59589330 59589509 + 2 NA Intergenic Intergenic 165772 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 334-97 chr11 109919143 109919421 + 2 NA Intergenic L1MC1|LINE|L1 -174110 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 219-56 chr11 98800186 98800357 + 2 NA Intergenic Intergenic -220678 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 332-496 chr7 85214825 85215048 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -93005 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 217-122 chr14 88168939 88169125 + 2 NA Intergenic L1PB4|LINE|L1 101879 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 482-179 chr4 36853377 36853794 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -148194 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 612-145 chr8 125846804 125847283 + 2 NA Intergenic Intergenic 104154 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 167-103 chr6 62420204 62420340 + 2 NA Intergenic Intergenic -134045 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 281-398 chr6 118026552 118026802 + 2 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) -59226 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 474-299 chr8 129348479 129348829 + 2 NA Intergenic L1MEf|LINE|L1 -107414 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 241-29 chr10 1892513 1892706 + 2 NA Intergenic Intergenic 121739 NR_040253 282980 Hs.576810 NR_040253 ENSG00000234962 LINC00700 - long intergenic non-protein coding RNA 700 ncRNA 622-91 chr4 26111908 26112287 + 2 NA Intergenic Intergenic 197905 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 323-490 chr7 41160581 41160808 + 2 NA Intergenic L1M4|LINE|L1 59090 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 227-8 chr1 62191193 62191336 + 2 NA Intergenic AluY|SINE|Alu -3585 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 349-130 chr12 46136063 46136267 + 2 NA Intergenic Intergenic 130351 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 492-94 chr14 86726957 86727340 + 2 NA Intergenic L2a|LINE|L2 -178630 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 718-20 chr12 74118597 74119005 + 2 NA Intergenic Intergenic 173830 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 170-8 chr1 158553189 158553341 + 2 NA Intergenic Intergenic -5160 NM_001005189 391112 Hs.553780 NM_001005189 ENSG00000197532 OR6Y1 OR1-11|OR6Y2 olfactory receptor family 6 subfamily Y member 1 protein-coding 342-410 chr5 92690514 92690801 + 2 NA Intergenic Intergenic 880686 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 671-93 chr7 84630900 84631429 + 2 NA Intergenic L1MA4A|LINE|L1 98688 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 206-272 chr8 126339012 126339143 + 2 NA Intergenic L1PA12|LINE|L1 13582 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 115-26 chr21 16062758 16062828 + 2 NA Intergenic L1ME3|LINE|L1 -7695 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 251-417 chr9 87098484 87098696 + 2 NA Intergenic MLT2F|LTR|ERVL -13365 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 342-236 chr2 62728247 62728453 + 2 NA intron (NM_001142615, intron 2 of 22) L1MB8|LINE|L1 21453 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 218-214 chr3 76387934 76388095 + 2 NA Intergenic L2c|LINE|L2 -602465 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 373-333 chr5 117716504 117716849 + 2 NA Intergenic L1MB3|LINE|L1 -13685 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 260-76 chr11 39855482 39855687 + 2 NA Intergenic Intergenic 437546 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 607-126 chr6 64776465 64776981 + 2 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -524695 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 441-118 chr2 29795848 29796114 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 125605 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 390-162 chr19 30085743 30086097 + 2 NA Intergenic L1M5|LINE|L1 143681 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 275-27 chr1 239752721 239752958 + 2 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -33720 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 491-113 chr2 31773706 31774101 + 2 NA Intergenic AluJr|SINE|Alu 30077 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 416-38 chr10 51437554 51437885 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 138146 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 280-157 chr16 86863987 86864257 + 2 NA Intergenic L1PA15|LINE|L1 142031 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 552-185 chr6 11648311 11648621 + 2 NA Intergenic L1MB8|LINE|L1 110717 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 288-125 chr14 98694253 98694490 + 2 NA Intergenic Intergenic -17242 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 235-256 chr4 63377904 63378099 + 2 NA Intergenic Intergenic 1031449 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 152-38 chr18 7498943 7499065 + 2 NA Intergenic Intergenic -37998 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 253-275 chr3 161016865 161017086 + 2 NA intron (NM_001317912, intron 3 of 4) intron (NM_001317912, intron 3 of 4) 87757 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 347-99 chr12 82283291 82283630 + 2 NA Intergenic Intergenic 74927 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 489-93 chr15 77139416 77139802 + 2 NA intron (NM_024776, intron 6 of 7) Tigger3b|DNA|TcMar-Tigger -68500 NM_001168412 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 441-24 chr10 48740740 48741148 + 2 NA intron (NM_020945, intron 11 of 61) L1MC4|LINE|L1 55481 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 288-120 chr14 70146451 70146604 + 2 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -40581 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 316-529 chr7 138687676 138687939 + 2 NA Intergenic L1MB7|LINE|L1 -8762 NM_001139456 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 269-271 chr4 44390315 44390503 + 2 NA intron (NM_198353, intron 1 of 1) L1PB1|LINE|L1 58400 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 516-186 chr4 16323870 16324261 + 2 NA Intergenic L2a|LINE|L2 97402 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 353-407 chr5 57739773 57740107 + 2 NA Intergenic L1ME3E|LINE|L1 89280 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 228-14 chr1 111764493 111764679 + 2 NA intron (NM_007204, intron 10 of 10) intron (NM_007204, intron 10 of 10) 8685 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 328-626 chrX 43084844 43085013 + 2 NA Intergenic Intergenic -92066 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 375-161 chr16 82394306 82394551 + 2 NA Intergenic Intergenic -224204 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 504-180 chr4 10265781 10266093 + 2 NA Intergenic MER31A|LTR|ERV1 -149138 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 259-20 chr1 170244817 170245008 + 2 NA Intergenic Intergenic 39296 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 236-153 chr18 78897480 78897659 + 2 NA Intergenic Intergenic -82706 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 392-263 chr5 137862987 137863248 + 2 NA Intergenic Intergenic -4739 NM_006790 9499 Hs.84665 NM_006790 ENSG00000120729 MYOT LGMD1|LGMD1A|MFM3|TTID|TTOD myotilin protein-coding 164-45 chr16 78677503 78677624 + 2 NA intron (NM_001291997, intron 7 of 7) MER102b|DNA|hAT-Charlie 577909 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 276-188 chr17 35013325 35013548 + 2 NA intron (NR_037714, intron 6 of 6) intron (NR_037714, intron 6 of 6) 32924 NM_013975 3980 Hs.100299 NM_002311 ENSG00000005156 LIG3 LIG2|LIG3alpha DNA ligase 3 protein-coding 401-152 chr2 32497324 32497547 + 2 NA intron (NM_016252, intron 45 of 73) L1MEc|LINE|L1 -34718 NR_030285 693143 NR_030285 ENSG00000207653 MIR558 MIRN558|hsa-mir-558 microRNA 558 ncRNA 516-268 chr9 37319848 37320210 + 2 NA intron (NR_110317, intron 4 of 7) L1MD|LINE|L1 -102667 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 603-136 chr5 144124272 144124817 + 2 NA Intergenic Intergenic 46115 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 308-112 chr12 88149316 88149549 + 2 NA intron (NM_001366579, intron 2 of 12) intron (NM_001366579, intron 2 of 12) 7125 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 567-66 chr16 50703955 50704352 + 2 NA intron (NR_163434, intron 2 of 12) intron (NR_163434, intron 2 of 12) 4773 NM_001293557 64127 Hs.592072 NM_022162 ENSG00000167207 NOD2 ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS nucleotide binding oligomerization domain containing 2 protein-coding 343-242 chr2 65618095 65618278 + 2 NA Intergenic Intergenic -185587 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 144-35 chr19 17059655 17059768 + 2 NA intron (NM_001011699, intron 5 of 10) Tigger5b|DNA|TcMar-Tigger 15741 NM_033417 93323 Hs.404088 NM_033417 ENSG00000131351 HAUS8 DGT4|HICE1|NY-SAR-48 HAUS augmin like complex subunit 8 protein-coding 750-16 chr13 50214794 50215499 + 2 NA intron (NR_109974, intron 2 of 6) L1MB7|LINE|L1 43128 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 308-391 chr5 97555105 97555357 + 2 NA intron (NR_105028, intron 2 of 3) MIRb|SINE|MIR 50535 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 337-140 chr13 92917435 92917618 + 2 NA Intergenic HAL1|LINE|L1 -127815 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 223-351 chr8 115635626 115635820 + 2 NA intron (NM_014112, intron 1 of 6) L2a|LINE|L2 32290 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 199-207 chr5 132142428 132142597 + 2 NA Intergenic Intergenic -42364 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 544-104 chr2 3148012 3148460 + 2 NA Intergenic Intergenic -22210 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 178-49 chr15 97504837 97504982 + 2 NA intron (NR_120324, intron 2 of 4) L2a|LINE|L2 16902 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 386-63 chr11 107113190 107113422 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -94830 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 863-46 chr7 92361294 92362113 + 2 NA intron (NM_019004, intron 9 of 19) intron (NM_019004, intron 9 of 19) 75611 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 339-333 chr21 29676328 29676597 + 2 NA intron (NM_001320621, intron 1 of 13) intron (NM_001320621, intron 1 of 13) -71713 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 237-80 chr12 78354298 78354492 + 2 NA intron (NR_135021, intron 1 of 1) intron (NR_135021, intron 1 of 1) 5351 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 316-35 chr1 189554443 189554721 + 2 NA Intergenic Intergenic 921428 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 139-64 chr4 76328824 76328939 + 2 NA intron (NM_001042784, intron 21 of 23) intron (NM_001042784, intron 21 of 23) 22855 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 333-384 chr4 36514501 36514725 + 2 NA intron (NR_149124, intron 3 of 4) MLT1D|LTR|ERVL-MaLR -88185 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 232-342 chr7 11637950 11638125 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 194161 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 272-97 chr12 80842671 80842872 + 2 NA intron (NM_004664, intron 4 of 5) intron (NM_004664, intron 4 of 5) -10142 NR_030348 693202 NR_030348 ENSG00000207763 MIR617 MIRN617|hsa-mir-617 microRNA 617 ncRNA 360-222 chr2 79452693 79452906 + 2 NA Intergenic Intergenic 48045 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 295-284 chr3 19369915 19370096 + 2 NA intron (NM_144633, intron 5 of 15) L2c|LINE|L2 -55074 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 279-334 chr5 101260859 101261020 + 2 NA Intergenic LTR22E|LTR|ERVK -357657 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 359-100 chr11 113421367 113421581 + 2 NA intron (NM_016574, intron 2 of 6) intron (NM_016574, intron 2 of 6) 28614 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 376-429 chr9 80733201 80733416 + 2 NA Intergenic L1MCa|LINE|L1 758285 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 359-457 chr7 79478648 79478904 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 24816 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 352-455 chr6 56610592 56610888 + 2 NA intron (NM_001144770, intron 35 of 94) intron (NM_001144770, intron 35 of 94) 32149 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 359-355 chr4 43489272 43489597 + 2 NA intron (NR_146993, intron 1 of 2) L1MEd|LINE|L1 3109 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 353-229 chr2 115893 116139 + 2 NA Intergenic Intergenic -69511 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 315-108 chr12 90452953 90453122 + 2 NA Intergenic Intergenic 159719 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 354-355 chr5 6821256 6821572 + 2 NA intron (NR_146281, intron 1 of 1) intron (NR_146281, intron 1 of 1) 6507 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 553-51 chr12 125519422 125519725 + 2 NA exon (NM_001366854, exon 4 of 9) exon (NM_001366854, exon 4 of 9) -102879 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 233-335 chr6 71496047 71496198 + 2 NA Intergenic Intergenic 75095 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 120-30 chr3 25534216 25534303 + 2 NA intron (NR_110892, intron 3 of 6) MIR|SINE|MIR 75949 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 367-439 chr8 25533200 25533460 + 2 NA Intergenic AluSz|SINE|Alu 74097 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 398-175 chr2 126418495 126418758 + 2 NA Intergenic L1M4c|LINE|L1 -237309 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 368-30 chr1 186655205 186655529 + 2 NA Intergenic Intergenic 25056 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 304-381 chr4 73482716 73482907 + 2 NA intron (NM_001133, intron 1 of 14) intron (NM_001133, intron 1 of 14) 1066 NM_001133 173 Hs.168718 NM_001133 ENSG00000079557 AFM ALB2|ALBA|ALF afamin protein-coding 280-31 chr1 198816193 198816404 + 2 NA intron (NR_040073, intron 2 of 2) Tigger2|DNA|TcMar-Tigger 42684 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 286-270 chr3 25533995 25534159 + 2 NA intron (NR_110892, intron 3 of 6) intron (NR_110892, intron 3 of 6) 75767 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 276-403 chr6 69845702 69845884 + 2 NA Intergenic Intergenic -20763 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 144-87 chr6 37584466 37584580 + 2 NA Intergenic Intergenic -29101 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 359-116 chr12 41120534 41120745 + 2 NA Intergenic Intergenic -67681 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 425-279 chr7 26629881 26630185 + 2 NA Intergenic Intergenic -7838 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 246-96 chr12 61092384 61092573 + 2 NA Intergenic Intergenic 1100361 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 504-81 chr15 86642072 86642464 + 2 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -290612 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 311-391 chr4 146786298 146786545 + 2 NA intron (NR_133922, intron 12 of 13) intron (NR_133922, intron 12 of 13) 147528 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 242-294 chr5 35967857 35968000 + 2 NA intron (NM_001171873, intron 4 of 5) (TCTA)n|Simple_repeat|Simple_repeat 23462 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 157-24 chr11 28064943 28065034 + 2 NA intron (NM_031217, intron 11 of 16) L2|LINE|L2 8173 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 330-306 chr2 185514049 185514299 + 2 NA Intergenic L1ME3Cz|LINE|L1 224545 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 332-45 chr10 8169712 8169913 + 2 NA Intergenic Intergenic 98493 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 395-337 chr8 84742922 84743169 + 2 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 37118 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 236-187 chr2 161684891 161685082 + 2 NA intron (NM_001354451, intron 1 of 25) Helitron3Na_Mam|RC|Helitron 60570 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 351-163 chr16 65557895 65558129 + 2 NA intron (NR_027755, intron 2 of 8) L2b|LINE|L2 18288 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 474-156 chr2 198774138 198774561 + 2 NA Intergenic Intergenic -399252 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 220-392 chr9 81481875 81482058 + 2 NA Intergenic L1MEg|LINE|L1 207569 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 458-136 chr2 122743646 122743966 + 2 NA Intergenic Intergenic 329675 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 257-176 chr2 18334192 18334377 + 2 NA Intergenic Intergenic 226369 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 226-271 chr5 13828418 13828622 + 2 NA intron (NM_001369, intron 38 of 78) MLT1E1A|LTR|ERVL-MaLR 115960 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 287-213 chr2 180061754 180062027 + 2 NA Intergenic Intergenic -54593 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 345-506 chr7 136469234 136469573 + 2 NA Intergenic L1PA11|LINE|L1 -399249 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 791-8 chr10 27865571 27866206 + 2 NA intron (NM_001290021, intron 10 of 13) intron (NM_001290021, intron 10 of 13) 115983 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 348-34 chr1 207212910 207213180 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -108633 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 551-84 chr2 33317509 33317948 + 2 NA intron (NM_001166264, intron 20 of 28) intron (NM_001166264, intron 20 of 28) -100788 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 169-30 chr12 104544181 104544300 + 2 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) -47393 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 442-124 chr2 22869763 22870110 + 2 NA Intergenic Intergenic 333457 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 227-380 chr8 135110672 135110824 + 2 NA Intergenic L1MA1|LINE|L1 -123383 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 306-449 chr6 159617235 159617476 + 2 NA Intergenic LTR41B|LTR|ERVL 75886 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 322-103 chr11 114664475 114664758 + 2 NA Intergenic Intergenic -13911 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 232-305 chr5 66822092 66822317 + 2 NA intron (NM_001290228, intron 3 of 4) intron (NM_001290228, intron 3 of 4) -6569 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 376-245 chr3 65822995 65823271 + 2 NA intron (NM_001365904, intron 1 of 24) L1MC5|LINE|L1 -70683 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 257-233 chr20 12658331 12658519 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 278538 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 268-43 chr10 39280257 39280488 + 2 NA Intergenic ALR/Alpha|Satellite|centr 583776 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 259-75 chr11 83941990 83942246 + 2 NA intron (NM_001142699, intron 14 of 27) intron (NM_001142699, intron 14 of 27) -259693 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 321-245 chr18 30676640 30676955 + 2 NA Intergenic Intergenic 365945 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 321-175 chr14 70534544 70534774 + 2 NA intron (NM_003814, intron 1 of 1) L1MB1|LINE|L1 345 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 330-232 chr18 71222320 71222629 + 2 NA Intergenic L2|LINE|L2 356482 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 357-488 chr9 132818830 132819094 + 2 NA intron (NM_001317959, intron 11 of 14) L1MEf|LINE|L1 -59382 NM_001316898 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 860-5 chr10 118118342 118118995 + 2 NA intron (NR_026940, intron 3 of 3) L2b|LINE|L2 -71727 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 369-29 chr10 20824998 20825269 + 2 NA intron (NM_006393, intron 18 of 27) intron (NM_006393, intron 18 of 27) 72469 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 279-277 chr3 165155064 165155260 + 2 NA Intergenic L1MC3|LINE|L1 41222 NM_001318810 22865 Hs.101745 NM_014926 ENSG00000121871 SLITRK3 - SLIT and NTRK like family member 3 protein-coding 238-68 chr11 56072593 56072756 + 2 NA Intergenic Intergenic -20634 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 236-370 chr8 132454853 132455041 + 2 NA intron (NM_004519, intron 1 of 14) L1MB3|LINE|L1 -7685 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 420-77 chr14 43419692 43419973 + 2 NA Intergenic L1PB3|LINE|L1 1087451 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 331-328 chr21 42999080 42999265 + 2 NA intron (NM_004571, intron 1 of 10) THE1B-int|LTR|ERVL-MaLR 24610 NM_001320694 5316 Hs.431043 NM_004571 ENSG00000160199 PKNOX1 PREP1|pkonx1c PBX/knotted 1 homeobox 1 protein-coding 454-258 chr5 54683485 54683850 + 2 NA intron (NR_104658, intron 1 of 2) L1MC1|LINE|L1 19657 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 162-81 chr3 29680600 29680711 + 2 NA intron (NM_001003792, intron 4 of 13) L1ME2z|LINE|L1 253501 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 346-167 chr15 97138375 97138605 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 355055 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 268-325 chr5 139017288 139017510 + 2 NA intron (NM_022464, intron 7 of 9) intron (NM_022464, intron 7 of 9) 141999 NM_001323989 1495 Hs.445981 NM_001903 ENSG00000044115 CTNNA1 CAP102|MDPT2 catenin alpha 1 protein-coding 541-121 chr2 83330700 83331117 + 2 NA Intergenic Intergenic -191906 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 457-44 chr11 128674625 128674958 + 2 NA Intergenic L1MC4a|LINE|L1 -11744 NM_001271012 2313 Hs.504281 NM_002017 ENSG00000151702 FLI1 BDPLT21|EWSR2|SIC-1 Fli-1 proto-oncogene, ETS transcription factor protein-coding 293-124 chr14 85097014 85097211 + 2 NA Intergenic L3|LINE|CR1 -174820 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 372-515 chr9 84086422 84086712 + 2 NA intron (NR_110995, intron 7 of 8) L1PA14|LINE|L1 23124 NR_110995 101927575 Hs.459826 NR_110995 ENSG00000227463 LOC101927575 - uncharacterized LOC101927575 ncRNA 397-278 chr6 62750084 62750330 + 2 NA Intergenic Intergenic -463980 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 427-157 chr3 67220271 67220520 + 2 NA Intergenic MIR|SINE|MIR -5069 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 482-39 chr10 83424175 83424565 + 2 NA Intergenic MIRb|SINE|MIR 252719 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 290-471 chr8 135403069 135403267 + 2 NA Intergenic MIR|SINE|MIR -54288 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 185-118 chr20 8265006 8265144 + 2 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 16371 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 240-150 chr15 47803217 47803374 + 2 NA TTS (NR_120336) TTS (NR_120336) 42941 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 193-109 chr2 104457155 104457275 + 2 NA intron (NR_015399, intron 1 of 3) L1MD2|LINE|L1 22868 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 260-226 chr2 193651262 193651480 + 2 NA Intergenic Intergenic -692898 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 420-117 chr19 36597788 36598121 + 2 NA intron (NM_001145650, intron 1 of 4) intron (NM_001145650, intron 1 of 4) 7303 NM_001145649 57711 Hs.654960 NM_020951 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 252-113 chr14 47734649 47734836 + 2 NA Intergenic Intergenic 26362 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 497-12 chr1 244597720 244598107 + 2 NA intron (NM_001130957, intron 17 of 21) intron (NM_001130957, intron 17 of 21) -55135 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 220 chr1 40391193 40391355 + 2 NA intron (NM_001198978, intron 1 of 9) intron (NM_001198978, intron 1 of 9) -2071 NM_001198979 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 313-375 chr4 32891020 32891241 + 2 NA Intergenic Intergenic 540092 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 352-254 chr2 155102027 155102280 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 403458 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 694-98 chr4 164430834 164431321 + 2 NA Intergenic Intergenic -47822 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 355-30 chr1 239077650 239077916 + 2 NA Intergenic L1MA2|LINE|L1 -308785 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 250-71 chr11 82162548 82162686 + 2 NA intron (NR_120571, intron 3 of 7) L1MEg|LINE|L1 241296 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 582-173 chrX 67084881 67085300 + 2 NA Intergenic L1MA4A|LINE|L1 -445792 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 525-2 chr1 45047421 45047744 + 2 NA intron (NM_020883, intron 5 of 13) L2a|LINE|L2 35328 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 268-182 chr2 21566378 21566546 + 2 NA Intergenic MIR3|SINE|MIR 144190 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 670-108 chr7 11693604 11694137 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 138328 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 217-83 chr12 10102696 10102853 + 2 NA Intergenic L1PB3|LINE|L1 -3789 NM_001297748 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 226-376 chr9 29740474 29740633 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -526952 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 320-603 chrUn_KI270448v1 498 664 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 626-93 chr3 100249376 100249764 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -11422 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 264-306 chr5 6022222 6022463 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 314950 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 585-131 chr5 162574545 162574896 + 2 NA Intergenic L1MEc|LINE|L1 507078 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 240-45 chr10 49086956 49087120 + 2 NA intron (NM_001031746, intron 2 of 7) L1MEg|LINE|L1 28484 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 317-250 chr2 141792620 141792911 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 338936 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 334-530 chr8 76813074 76813254 + 2 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -129889 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 261-219 chr20 54630843 54631058 + 2 NA intron (NM_018431, intron 6 of 7) intron (NM_018431, intron 6 of 7) 155357 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 513-219 chr5 30475232 30475570 + 2 NA Intergenic Intergenic 594841 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 296-346 chr4 87355338 87355557 + 2 NA intron (NM_016245, intron 5 of 6) L1MC|LINE|L1 -32565 NM_001136230 345275 Hs.284414 NM_178135 ENSG00000170509 HSD17B13 HMFN0376|NIIL497|SCDR9|SDR16C3 hydroxysteroid 17-beta dehydrogenase 13 protein-coding 338 chr1 5786234 5786408 + 2 NA Intergenic Intergenic 76420 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 272-455 chr8 109029414 109029584 + 2 NA Intergenic MIRb|SINE|MIR -57129 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 191-94 chr2 45199217 45199401 + 2 NA intron (NR_033831, intron 1 of 5) L1MEf|LINE|L1 55632 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 202-86 chr16 12233691 12233808 + 2 NA intron (NM_032167, intron 14 of 20) L1MB7|LINE|L1 257015 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 237-207 chr20 16138623 16138843 + 2 NA Intergenic L1MB7|LINE|L1 -152851 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 237-394 chr8 130720500 130720658 + 2 NA Intergenic Intergenic -276905 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 308-229 chr2 78095237 78095521 + 2 NA intron (NR_110287, intron 3 of 5) intron (NR_110287, intron 3 of 5) 6649 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 293-300 chr4 60914247 60914413 + 2 NA Intergenic Intergenic -8289 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 466-250 chr7 48278957 48279271 + 2 NA exon (NM_152701, exon 18 of 62) exon (NM_152701, exon 18 of 62) 107656 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 447-274 chr8 107324520 107324914 + 2 NA intron (NM_001199859, intron 3 of 8) intron (NM_001199859, intron 3 of 8) 11798 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 350-395 chr5 60609651 60609849 + 2 NA intron (NM_001145208, intron 7 of 9) intron (NM_001145208, intron 7 of 9) 90416 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 301-482 chr9 71603919 71604160 + 2 NA Intergenic L1ME3G|LINE|L1 -157068 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 268-104 chr13 97094466 97094665 + 2 NA Intergenic Intergenic 85057 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 439-80 chr12 130111472 130111842 + 2 NA Intergenic MIR|SINE|MIR 40322 NR_146538 105370078 NR_146538 LINC02419 - long intergenic non-protein coding RNA 2419 ncRNA 308-542 chr9 105289078 105289267 + 2 NA intron (NM_001330731, intron 1 of 15) L2a|LINE|L2 44521 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 292-437 chr8 104966143 104966341 + 2 NA Intergenic Plat_L3|LINE|CR1 -352196 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 844-22 chr16 86335085 86335610 + 2 NA intron (NR_024406, intron 4 of 6) L2a|LINE|L2 10332 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 717-14 chr10 45495887 45496340 + 2 NA intron (NM_001282866, intron 2 of 7) L1M4b|LINE|L1 39258 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 383-225 chr20 52279006 52279209 + 2 NA Intergenic Intergenic -87122 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 245-322 chr7 26943221 26943437 + 2 NA Intergenic Intergenic -78739 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 602-55 chr2 52323526 52323964 + 2 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -46903 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 278-305 chr4 35419507 35419671 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 824350 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 211-241 chr5 104394666 104394837 + 2 NA Intergenic L1MC1|LINE|L1 -704723 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 247-71 chr11 122059575 122059717 + 2 NA intron (NR_137178, intron 3 of 4) L1MEc|LINE|L1 40198 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 459-72 chr13 84403286 84403621 + 2 NA intron (NR_046871, intron 3 of 6) L2a|LINE|L2 262851 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 495-95 chr18 67046362 67046808 + 2 NA Intergenic L1MC2|LINE|L1 -34999 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 319-572 chr9 37185272 37185566 + 2 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 64821 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 318-149 chr12 114701536 114701751 + 2 NA Intergenic Intergenic -17468 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 354-106 chr12 64941161 64941381 + 2 NA intron (NR_146276, intron 3 of 3) MER47A|DNA|TcMar-Tigger 51020 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 498-24 chr10 25000332 25000682 + 2 NA intron (NM_145010, intron 1 of 5) L1MEc|LINE|L1 15651 NM_145010 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 126-3 chr1 115393921 115394030 + 2 NA Intergenic L1MC5|LINE|L1 -55739 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 714-17 chr12 28858966 28859524 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -290033 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 404-109 chr14 88235166 88235448 + 2 NA intron (NM_138317, intron 3 of 6) L1M7|LINE|L1 35604 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 227-139 chr17 73744819 73744995 + 2 NA intron (NM_001278587, intron 2 of 5) intron (NM_001278587, intron 2 of 5) 7053 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 294-247 chr2 199809717 199809943 + 2 NA 3' UTR (NM_001363886, exon 5 of 5) 3' UTR (NM_001363886, exon 5 of 5) 41343 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 369-401 chr8 56479677 56480001 + 2 NA intron (NR_125813, intron 1 of 3) intron (NR_125813, intron 1 of 3) -33198 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 722-4 chr1 79628189 79628644 + 2 NA Intergenic Intergenic -621686 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 382-85 chr12 129552399 129552755 + 2 NA intron (NM_133448, intron 2 of 8) (ATCT)n|Simple_repeat|Simple_repeat 343976 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 289-7 chr1 70497666 70497855 + 2 NA Intergenic Intergenic 86492 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 305-439 chr5 82226822 82227096 + 2 NA intron (NM_031482, intron 5 of 7) intron (NM_031482, intron 5 of 7) 51395 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 385-61 chr12 17216896 17217166 + 2 NA Intergenic Intergenic 228284 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 345-118 chr12 38728228 38728514 + 2 NA intron (NM_153634, intron 11 of 19) L1M4|LINE|L1 177220 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 291-138 chr14 83741105 83741303 + 2 NA Intergenic Intergenic 1098572 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 378-240 chr2 116356361 116356602 + 2 NA Intergenic L1MCa|LINE|L1 1012666 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 260-51 chr10 56533406 56533605 + 2 NA Intergenic Intergenic -172232 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 286-302 chr4 12458299 12458509 + 2 NA Intergenic Intergenic 234953 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 346-330 chr3 139644701 139645034 + 2 NA intron (NM_178177, intron 1 of 4) HAL1ME|LINE|L1 33105 NM_001320510 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 308-473 chr7 93405258 93405479 + 2 NA Intergenic L1M2|LINE|L1 77487 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 226-325 chr7 40873572 40873727 + 2 NA Intergenic Intergenic 106290 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 547-29 chr11 6238347 6238728 + 2 NA promoter-TSS (NM_001037329) promoter-TSS (NM_001037329) -552 NM_001037329 1262 Hs.434618 NM_001037329 ENSG00000132259 CNGA4 CNCA2|CNG-4|CNG4|CNG5|CNGB2|OCNC2|OCNCBETA|OCNCb cyclic nucleotide gated channel alpha 4 protein-coding 223-331 chr8 10032467 10032655 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -21731 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 411-250 chr6 40182265 40182563 + 2 NA Intergenic Intergenic 173592 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 224-298 chr7 51643170 51643325 + 2 NA Intergenic Intergenic -249991 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 329-487 chr6 40158919 40159136 + 2 NA Intergenic Intergenic 196979 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 169-104 chr5 175730439 175730544 + 2 NA Intergenic Intergenic -66042 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 206-198 chr5 12065094 12065269 + 2 NA Intergenic Intergenic -160735 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 317-274 chr20 34798784 34799085 + 2 NA intron (NM_014071, intron 1 of 14) L1M1|LINE|L1 -16530 NM_001242539 23054 Hs.368971 NM_014071 ENSG00000198646 NCOA6 AIB3|ASC2|NRC|PRIP|RAP250|TRBP nuclear receptor coactivator 6 protein-coding 260-352 chr5 85706964 85707123 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -575401 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 308-512 chr8 122209975 122210217 + 2 NA Intergenic Intergenic 358548 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 698-44 chr20 1463263 1463787 + 2 NA intron (NR_038164, intron 1 of 7) intron (NR_038164, intron 1 of 7) 4167 NM_018839 55968 Hs.12865 NM_016143 ENSG00000088833 NSFL1C P47|UBX1|UBXD10|UBXN2C|dJ776F14.1 NSFL1 cofactor protein-coding 415-21 chr1 216244564 216244911 + 2 NA intron (NM_206933, intron 13 of 71) intron (NM_206933, intron 13 of 71) 172272 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 226-111 chr16 10394535 10394751 + 2 NA intron (NM_024997, intron 1 of 11) L1M4|LINE|L1 8582 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 577-122 chr3 114658699 114659244 + 2 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -34026 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 225-77 chr12 112882889 112883060 + 2 NA intron (NR_145127, intron 16 of 22) intron (NR_145127, intron 16 of 22) -23803 NM_002534 4938 Hs.524760 NM_002534 ENSG00000089127 OAS1 E18/E16|IFI-4|OIAS|OIASI 2'-5'-oligoadenylate synthetase 1 protein-coding 499-129 chr2 144422728 144423057 + 2 NA intron (NM_001171653, intron 3 of 8) intron (NM_001171653, intron 3 of 8) -89823 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 367-372 chr5 144227316 144227606 + 2 NA intron (NM_001370487, intron 2 of 2) L2a|LINE|L2 22070 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 135-21 chr14 75751440 75751542 + 2 NA intron (NM_015072, intron 17 of 31) Tigger7|DNA|TcMar-Tigger 90245 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 665-42 chr16 65415002 65415661 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 160969 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 366-426 chr8 27125201 27125433 + 2 NA Intergenic L1MA4|LINE|L1 -76354 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 329-34 chr1 217466080 217466307 + 2 NA intron (NM_018040, intron 8 of 9) L1M8|LINE|L1 164897 NM_001297754 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 323-591 chrX 17224366 17224684 + 2 NA Intergenic Intergenic -150675 NM_198270 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 313-440 chr5 97611689 97611899 + 2 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 107098 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 501-182 chr4 4597432 4597831 + 2 NA intron (NR_037888, intron 2 of 5) L1MB8|LINE|L1 -55288 NM_001346282 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 318-87 chr10 127666431 127666701 + 2 NA Intergenic L1MC4|LINE|L1 -70619 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 256-8 chr1 68235246 68235436 + 2 NA Intergenic Intergenic -2795 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 301-73 chr11 83618510 83618791 + 2 NA intron (NM_001142699, intron 19 of 27) MIRb|SINE|MIR 63775 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 282-502 chrX 99929001 99929221 + 2 NA Intergenic Intergenic 481162 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 435-191 chr5 30225521 30225832 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 345116 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 273-273 chr21 44635842 44635994 + 2 NA intron (NM_144991, intron 1 of 11) L1M5|LINE|L1 -1438 NM_181688 353333 Hs.474001 NM_181688 ENSG00000221859 KRTAP10-10 KAP10.10|KAP18.10|KRTAP18-10|KRTAP18.10 keratin associated protein 10-10 protein-coding 193-180 chr6 169711144 169711267 + 2 NA intron (NM_018288, intron 8 of 11) L1ME4a|LINE|L1 9079 NM_001317342 387263 Hs.591375 NM_001029863 ENSG00000185127 C6orf120 - chromosome 6 open reading frame 120 protein-coding 259-207 chr2 112889570 112889804 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -23284 NM_173202 27178 Hs.166371 NM_014439 ENSG00000125571 IL37 FIL1|FIL1(ZETA)|FIL1Z|IL-1F7|IL-1H|IL-1H4|IL-1RP1|IL-37|IL1F7|IL1H4|IL1RP1 interleukin 37 protein-coding 374-43 chr10 115934556 115934820 + 2 NA intron (NM_207303, intron 28 of 28) L2c|LINE|L2 260101 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 263-416 chr8 74520558 74520722 + 2 NA Intergenic L1MA3|LINE|L1 -27903 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 435-221 chr6 121870681 121871032 + 2 NA Intergenic Intergenic 435210 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 213-305 chr9 104815892 104816063 + 2 NA intron (NM_005502, intron 25 of 49) intron (NM_005502, intron 25 of 49) 51848 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 291-400 chr7 26930707 26930896 + 2 NA Intergenic Intergenic -66211 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 261-341 chr6 168011286 168011452 + 2 NA Intergenic L1M2c|LINE|L1 -6504 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 312-322 chr3 34159128 34159425 + 2 NA Intergenic Intergenic 360646 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 287-174 chr18 44563780 44563985 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 32103 NR_131768 105667213 Hs.135737 NR_131768 LINC01601 - long intergenic non-protein coding RNA 1601 ncRNA 433-111 chr17 63231572 63231880 + 2 NA intron (NM_025185, intron 6 of 25) L1PA10|LINE|L1 208541 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 392-121 chr18 34332464 34332667 + 2 NA Intergenic L1PA2|LINE|L1 -109014 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 206-151 chr3 5238326 5238486 + 2 NA Intergenic MER3|DNA|hAT-Charlie 11849 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 331-350 chr3 75912009 75912312 + 2 NA Intergenic Intergenic -126611 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 345-560 chr9 105773210 105773504 + 2 NA intron (NM_018112, intron 5 of 5) intron (NM_018112, intron 5 of 5) 78816 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 488-20 chr10 6353060 6353481 + 2 NA non-coding (NR_148966, exon 1 of 1) non-coding (NR_148966, exon 1 of 1) 2954 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 224-146 chr2 80758985 80759152 + 2 NA Intergenic L1MD1|LINE|L1 445689 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 383-367 chr7 125240978 125241222 + 2 NA intron (NR_110183, intron 3 of 3) Tigger1|DNA|TcMar-Tigger 23191 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 187-82 chr2 123305546 123305701 + 2 NA Intergenic MIRc|SINE|MIR -232142 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 352-267 chr2 200134038 200134267 + 2 NA Intergenic Intergenic -171727 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 372-87 chr11 112173715 112174008 + 2 NA Intergenic Intergenic -1651 NM_001256398 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 446-41 chr10 43139516 43139898 + 2 NA intron (NM_018590, intron 1 of 7) L1ME2|LINE|L1 1262 NR_135077 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 295-246 chr2 214059240 214059476 + 2 NA intron (NR_047660, intron 12 of 14) L1MEj|LINE|L1 301291 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 643-117 chr7 64036306 64036668 + 2 NA Intergenic Intergenic -6385 NR_039987 100506050 Hs.405628 NR_039987 ENSG00000228564 LINC01005 - long intergenic non-protein coding RNA 1005 ncRNA 252-311 chr4 185602350 185602579 + 2 NA intron (NM_001145672, intron 18 of 20) intron (NM_001145672, intron 18 of 20) 54282 NM_001145675 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 337-274 chr2 139641752 139641923 + 2 NA Intergenic L1PA15-16|LINE|L1 744513 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 306-199 chr17 68581908 68582062 + 2 NA intron (NM_017565, intron 1 of 10) MIRb|SINE|MIR 19382 NM_017565 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 221-265 chr6 93916685 93916890 + 2 NA Intergenic Intergenic 198484 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 251-385 chr8 59446029 59446203 + 2 NA Intergenic L1MA2|LINE|L1 326906 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 306-95 chr11 129147821 129147977 + 2 NA intron (NM_001142685, intron 2 of 21) L2c|LINE|L2 44299 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 276-102 chr12 17751560 17751789 + 2 NA Intergenic Intergenic 78375 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 473-107 chr17 39009358 39009709 + 2 NA Intergenic Intergenic 17577 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 280-429 chr8 134698622 134698866 + 2 NA intron (NM_001289394, intron 1 of 16) intron (NM_001289394, intron 1 of 16) -2189 NM_001167583 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 305-66 chr10 69488389 69488549 + 2 NA intron (NM_012339, intron 3 of 7) intron (NM_012339, intron 3 of 7) 37002 NM_001351263 23555 Hs.499941 NM_012339 ENSG00000099282 TSPAN15 2700063A19Rik|NET-7|NET7|TM4SF15 tetraspanin 15 protein-coding 366-306 chr4 52060425 52060726 + 2 NA intron (NM_001346102, intron 2 of 10) intron (NM_001346102, intron 2 of 10) 9271 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 675-74 chr5 123706319 123706707 + 2 NA Intergenic Intergenic 161096 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 375-293 chr4 82759811 82760166 + 2 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) -6558 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 504-228 chr6 124123300 124123732 + 2 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -159489 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 367-488 chrX 66693622 66693871 + 2 NA Intergenic L1ME2z|LINE|L1 -54448 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 266-413 chr8 60132548 60132719 + 2 NA Intergenic Intergenic 148767 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 358-372 chr5 77589725 77590051 + 2 NA Intergenic L1ME3|LINE|L1 48809 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 681-4 chr10 67635057 67635471 + 2 NA intron (NM_001127384, intron 2 of 17) L1PA11|LINE|L1 30396 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 240-27 chr1 209907433 209907642 + 2 NA Intergenic L1MCa|LINE|L1 -30637 NM_001146261 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 299-475 chr8 144877907 144878184 + 2 NA 3' UTR (NM_001363101, exon 6 of 6) 3' UTR (NM_001363101, exon 6 of 6) 22260 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 337-170 chr15 46627167 46627354 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -556829 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 386-304 chr5 157982061 157982400 + 2 NA Intergenic L1MC4a|LINE|L1 -123085 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 401-31 chr10 59512310 59512656 + 2 NA Intergenic Intergenic -149302 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 294-10 chr1 89304293 89304513 + 2 NA Intergenic L1MA6|LINE|L1 -14041 NR_077244 729930 Hs.745054 NR_077244 LOC729930 - chromosome 11 open reading frame 74 pseudogene pseudo 548-26 chr10 76661843 76662211 + 2 NA Intergenic L1MEd|LINE|L1 -226017 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 358-16 chr1 167890069 167890414 + 2 NA intron (NM_018417, intron 8 of 32) L1MA3|LINE|L1 23893 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 560-24 chr10 77210541 77210951 + 2 NA intron (NM_001271519, intron 3 of 28) L1PA16|LINE|L1 69915 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 230-166 chr2 42431346 42431535 + 2 NA Intergenic Intergenic -62483 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 240-319 chr4 76807214 76807441 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 90817 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 565-104 chr20 62113093 62113491 + 2 NA Intergenic Intergenic -9183 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 516-136 chr2 149231134 149231529 + 2 NA Intergenic L1PB1|LINE|L1 -98654 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 359-454 chr7 56504625 56504963 + 2 NA Intergenic Intergenic 8571 NR_026929 222029 Hs.568108 NR_026929 DKFZp434L192 - uncharacterized protein DKFZp434L192 ncRNA 321-45 chr10 9866095 9866362 + 2 NA Intergenic L2c|LINE|L2 -192494 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 337-230 chr19 34887884 34888085 + 2 NA Intergenic Intergenic 10959 NR_046222 100652909 Hs.374015 NR_046222 ENSG00000271649 LINC00904 - long intergenic non-protein coding RNA 904 ncRNA 378-317 chr4 117431120 117431337 + 2 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 2830 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 305-418 chr5 6090683 6090842 + 2 NA Intergenic Intergenic 246530 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 577-202 chr9 74889385 74889895 + 2 NA Intergenic Intergenic -1719 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 409-33 chr10 108806158 108806468 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -737020 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 529-18 chr10 64588337 64588809 + 2 NA Intergenic Intergenic -236955 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 689-45 chr2 52331348 52331819 + 2 NA intron (NR_135237, intron 8 of 10) L2b|LINE|L2 -39065 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 193-179 chr6 134655371 134655532 + 2 NA Intergenic Intergenic -115446 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 290-19 chr1 115201100 115201282 + 2 NA Intergenic L1PB3|LINE|L1 -81843 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 307-194 chr17 72352567 72352800 + 2 NA intron (NR_135222, intron 1 of 3) MIRc|SINE|MIR 9872 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 313-280 chr2 157882696 157882917 + 2 NA Intergenic Intergenic -6476 NM_001111067 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 321-141 chr12 97057078 97057263 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 149704 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 295-127 chr14 52149089 52149315 + 2 NA Intergenic L1PA15|LINE|L1 -80143 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 501-279 chr9 86118624 86119096 + 2 NA Intergenic Intergenic -8680 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 325-26 chr1 166229941 166230260 + 2 NA Intergenic L1PA11|LINE|L1 -63345 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 284-89 chr12 58383531 58383786 + 2 NA Intergenic Intergenic -208044 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 332-125 chr12 42907366 42907544 + 2 NA Intergenic Intergenic 215239 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 300-187 chr2 45728183 45728390 + 2 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 76611 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 342-402 chr5 61912999 61913253 + 2 NA Intergenic MER61-int|LTR|ERV1 -177428 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 482-286 chr8 136043175 136043550 + 2 NA Intergenic L2c|LINE|L2 -487436 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 565-168 chr7 50113109 50113496 + 2 NA intron (NM_001161834, intron 2 of 8) L1MEc|LINE|L1 17216 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 305-53 chr10 14424017 14424177 + 2 NA Intergenic AluSp|SINE|Alu -12479 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 351-250 chr2 200611258 200611559 + 2 NA exon (NM_001159, exon 13 of 35) exon (NM_001159, exon 13 of 35) 25394 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 326-421 chr5 105370325 105370614 + 2 NA Intergenic L1MD|LINE|L1 270995 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 367-60 chr10 106328519 106328862 + 2 NA Intergenic L1PA10|LINE|L1 188525 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 316-148 chr12 128371344 128371558 + 2 NA intron (NM_001136103, intron 1 of 8) MLT1K|LTR|ERVL-MaLR 77359 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 646-110 chr5 164809673 164810075 + 2 NA Intergenic Intergenic 339595 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 820-64 chr8 105177473 105178228 + 2 NA Intergenic L2a|LINE|L2 -140588 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 285-108 chr13 108617628 108617874 + 2 NA intron (NM_015011, intron 1 of 34) intron (NM_015011, intron 1 of 34) -11860 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 561-160 chr5 45299918 45300313 + 2 NA intron (NM_021072, intron 6 of 7) intron (NM_021072, intron 6 of 7) 396265 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 442-301 chr8 135343358 135343703 + 2 NA Intergenic Intergenic 109399 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 363-78 chr11 43020490 43020785 + 2 NA Intergenic MIRc|SINE|MIR 248732 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 516-249 chr8 78298411 78298783 + 2 NA Intergenic Intergenic -217743 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 340-138 chr13 108076369 108076698 + 2 NA Intergenic Intergenic 138249 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 378-277 chr3 35088243 35088448 + 2 NA intron (NR_110817, intron 2 of 3) L1PB1|LINE|L1 305678 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 265-415 chr9 92534261 92534522 + 2 NA intron (NM_001197296, intron 1 of 9) intron (NM_001197296, intron 1 of 9) 1701 NM_001197296 1842 Hs.117060 NM_001393 ENSG00000106823 ECM2 - extracellular matrix protein 2 protein-coding 218-233 chr4 12054127 12054312 + 2 NA Intergenic L1MC4|LINE|L1 -169232 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 380-205 chr2 211356415 211356751 + 2 NA Intergenic Intergenic 739012 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 537-123 chr2 118395417 118395799 + 2 NA Intergenic Intergenic 207358 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 139-23 chr12 46899973 46900065 + 2 NA Intergenic HAL1|LINE|L1 -74022 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 344-532 chrX 63956825 63957030 + 2 NA Intergenic L1MB3|LINE|L1 -170840 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 401-130 chr17 65883062 65883343 + 2 NA intron (NM_001353129, intron 20 of 26) intron (NM_001353129, intron 20 of 26) -56659 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 654-109 chr6 144599255 144599747 + 2 NA intron (NM_007124, intron 50 of 73) intron (NM_007124, intron 50 of 73) 193846 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 314-552 chr8 34002881 34003046 + 2 NA Intergenic AluSp|SINE|Alu -402857 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 324-512 chr7 121342015 121342313 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 13164 NM_057168 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 398-236 chr4 30848067 30848287 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 127808 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 457-232 chr7 43425619 43426018 + 2 NA intron (NM_001287059, intron 7 of 27) MSTD|LTR|ERVL-MaLR 96724 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 896-28 chr5 162618741 162619403 + 2 NA Intergenic Intergenic 551430 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 145-73 chr6 126267591 126267675 + 2 NA Intergenic Intergenic -72156 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 260-93 chr12 13690589 13690807 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 289658 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 205-254 chr6 169534554 169534690 + 2 NA intron (NR_146875, intron 19 of 20) L1M4|LINE|L1 167407 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 322-476 chr7 1688394 1688646 + 2 NA intron (NM_001128636, intron 1 of 2) L1M5|LINE|L1 401 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 320-475 chr6 6266296 6266592 + 2 NA intron (NM_000129, intron 4 of 14) AluJr|SINE|Alu 54247 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 313-71 chr10 130805805 130806043 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 156744 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 372-92 chr11 114740217 114740563 + 2 NA Intergenic L1MA9|LINE|L1 61863 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 285-376 chr6 162241336 162241614 + 2 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -485657 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 316-206 chr16 77745017 77745182 + 2 NA Intergenic Intergenic 22585 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 283-358 chr5 51764506 51764768 + 2 NA Intergenic L2|LINE|L2 -243394 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 620-11 chr10 32655031 32655451 + 2 NA intron (NM_001321115, intron 21 of 43) L1M4|LINE|L1 209101 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 220-55 chr10 82403827 82404002 + 2 NA intron (NR_163253, intron 3 of 10) MIRc|SINE|MIR -170994 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 312-122 chr13 40647163 40647347 + 2 NA intron (NM_002015, intron 1 of 2) MER34C2|LTR|ERV1 19386 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 242-239 chr3 83217248 83217441 + 2 NA Intergenic LTR12C|LTR|ERV1 1231202 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 382-369 chr6 168410218 168410493 + 2 NA Intergenic Intergenic -30829 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 251-19 chr1 189339429 189339610 + 2 NA Intergenic Intergenic 1136491 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 595-167 chr8 139135608 139136023 + 2 NA Intergenic Intergenic -221774 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 437-89 chr15 93785299 93785660 + 2 NA Intergenic Intergenic -71081 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 255-295 chr4 65810334 65810565 + 2 NA Intergenic HERVL-int|LTR|ERVL -139954 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 301-429 chr7 112087996 112088149 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 118327 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 286-49 chr10 97123041 97123227 + 2 NA intron (NM_003061, intron 4 of 36) MIRb|SINE|MIR 20378 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 353-75 chr10 113501670 113501910 + 2 NA Intergenic Intergenic -49041 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 359-489 chr8 127356029 127356271 + 2 NA intron (NR_117099, intron 3 of 3) L2c|LINE|L2 -44249 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 294-75 chr12 17415325 17415521 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 173655 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 230-345 chr7 36569934 36570107 + 2 NA intron (NM_001177507, intron 12 of 19) L1MB1|LINE|L1 30100 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 272-404 chr6 149120227 149120421 + 2 NA Intergenic Intergenic -87663 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 358-309 chr3 133219067 133219395 + 2 NA intron (NM_001282865, intron 1 of 3) L1MA8|LINE|L1 37890 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 233-287 chr5 17282443 17282588 + 2 NA Intergenic Intergenic 64884 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 257-29 chr1 238586290 238586503 + 2 NA Intergenic FLAM_A|SINE|Alu -100379 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 335-509 chr7 69123082 69123271 + 2 NA Intergenic Intergenic 474448 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 400-374 chrX 50142261 50142538 + 2 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat 57973 NM_139289 8852 Hs.97633 NM_003886 ENSG00000147081 AKAP4 AKAP 82|AKAP-4|AKAP82|CT99|FSC1|HI|PRKA4|hAKAP82|p82 A-kinase anchoring protein 4 protein-coding 201-264 chrX 43450726 43450911 + 2 NA Intergenic Intergenic -204089 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 311-262 chr2 98759945 98760147 + 2 NA Intergenic Intergenic 11852 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 553-224 chr7 138074035 138074430 + 2 NA Intergenic LOR1b|LTR|ERV1 -2227 NM_001190906 6718 Hs.201667 NM_005989 ENSG00000122787 AKR1D1 3o5bred|CBAS2|SRD5B1 aldo-keto reductase family 1 member D1 protein-coding 549-35 chr11 40672691 40673196 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -379813 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 655-21 chr11 78631153 78631584 + 2 NA Intergenic L1M1|LINE|L1 -56504 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 486-65 chr12 129481093 129481410 + 2 NA intron (NM_133448, intron 3 of 8) AluJr|SINE|Alu 272650 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 383-188 chr2 72836654 72837026 + 2 NA Intergenic L1MB7|LINE|L1 -10807 NM_001321734 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 396-92 chr12 86493795 86494048 + 2 NA intron (NM_013244, intron 1 of 6) intron (NM_013244, intron 1 of 6) -236622 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 190-64 chr15 59860339 59860515 + 2 NA Intergenic Intergenic -143884 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 332-596 chrX 112003860 112004096 + 2 NA intron (NM_012471, intron 1 of 10) MIRb|SINE|MIR 78798 NM_012471 7224 Hs.657709 NM_012471 ENSG00000072315 TRPC5 PPP1R159|TRP5 transient receptor potential cation channel subfamily C member 5 protein-coding 314-298 chr2 121803014 121803302 + 2 NA Intergenic L1M5|LINE|L1 47507 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 229-8 chr1 83111907 83112106 + 2 NA intron (NR_147074, intron 9 of 10) intron (NR_147074, intron 9 of 10) -125798 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 271-214 chr2 157271227 157271448 + 2 NA intron (NM_001329868, intron 2 of 10) L2b|LINE|L2 13632 NM_001329868 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 639-23 chr11 106171468 106172020 + 2 NA Intergenic MLT2A2|LTR|ERVL -39628 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 220-378 chr8 127155206 127155368 + 2 NA Intergenic L1PB1|LINE|L1 42340 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 269-176 chr2 12544449 12544672 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -172312 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 312-441 chr5 180620705 180621009 + 2 NA intron (NM_002020, intron 15 of 29) CpG-22961 28743 NM_001354989 2324 Hs.646917 NM_002020 ENSG00000037280 FLT4 FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3 fms related tyrosine kinase 4 protein-coding 317-158 chr14 82444087 82444393 + 2 NA Intergenic Intergenic -198392 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 547-65 chr14 42990209 42990701 + 2 NA Intergenic Intergenic 1383599 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 457-272 chr9 73956212 73956589 + 2 NA Intergenic L1PA15-16|LINE|L1 -415131 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 238-351 chr7 22280353 22280494 + 2 NA intron (NM_012294, intron 6 of 25) LTR78B|LTR|ERV1 76731 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 417-276 chr8 46459512 46459846 + 2 NA Intergenic ALR/Alpha|Satellite|centr 157964 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 408-207 chr3 51782048 51782340 + 2 NA Intergenic L1MB5|LINE|L1 -2957 NM_001368368 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 371-92 chr13 40088478 40088815 + 2 NA Intergenic Intergenic -93163 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 237-88 chr13 35941692 35941855 + 2 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -85912 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 368-320 chr4 28556658 28556843 + 2 NA Intergenic Intergenic -262832 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 351-303 chr3 79614234 79614554 + 2 NA intron (NM_002941, intron 1 of 30) L1MEc|LINE|L1 106507 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 217-187 chr2 139671929 139672070 + 2 NA Intergenic LTR73|LTR|ERV1 774675 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 374-189 chr2 99233100 99233472 + 2 NA Intergenic L1PA15-16|LINE|L1 21821 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 339-288 chr2 173278275 173278564 + 2 NA intron (NR_033882, intron 1 of 7) AluSx|SINE|Alu 3617 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 325-350 chr3 80202388 80202583 + 2 NA Intergenic MER34B-int|LTR|ERV1 -434487 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 291-389 chr6 106771716 106771987 + 2 NA intron (NR_147986, intron 1 of 3) MLT1K|LTR|ERVL-MaLR -12274 NR_030314 693172 NR_030314 ENSG00000207577 MIR587 MIRN587|hsa-mir-587 microRNA 587 ncRNA 178-141 chr8 36700814 36700966 + 2 NA Intergenic L1ME3A|LINE|L1 -83484 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 446-265 chr6 64446345 64446782 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 639727 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 489-246 chr7 134236624 134236960 + 2 NA intron (NM_144648, intron 16 of 19) L1MC5a|LINE|L1 80138 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 258-86 chr12 41911409 41911646 + 2 NA Intergenic Intergenic 147338 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 599-127 chr7 144648662 144649167 + 2 NA intron (NR_146935, intron 3 of 6) intron (NR_146935, intron 3 of 6) 89984 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 370-113 chr12 59796433 59796705 + 2 NA Intergenic L1PA10|LINE|L1 107199 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 315-246 chr2 99797479 99797725 + 2 NA intron (NM_001025108, intron 7 of 23) L1ME1|LINE|L1 -307585 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 283-79 chr11 50207937 50208149 + 2 NA Intergenic LTR8B|LTR|ERV1 90419 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 425-67 chr12 13990086 13990493 + 2 NA Intergenic Intergenic -9933 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 264-66 chr10 115906396 115906559 + 2 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 288312 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 320-560 chr8 105846123 105846392 + 2 NA intron (NR_125796, intron 2 of 7) MLT1I|LTR|ERVL-MaLR 214246 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 484-130 chr2 66199719 66200180 + 2 NA Intergenic MIRb|SINE|MIR 158379 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 276-227 chr2 69934914 69935106 + 2 NA intron (NM_001202513, intron 3 of 5) MER47C|DNA|TcMar-Tigger 19901 NM_001202513 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 236-310 chr6 113337328 113337558 + 2 NA Intergenic L2a|LINE|L2 96004 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 478-66 chr12 90758108 90758504 + 2 NA Intergenic Intergenic -159717 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 456-192 chr22 41115798 41116197 + 2 NA intron (NM_001429, intron 1 of 30) intron (NM_001429, intron 1 of 30) 23405 NM_001429 2033 Hs.517517 NM_001429 ENSG00000100393 EP300 KAT3B|MKHK2|RSTS2|p300 E1A binding protein p300 protein-coding 457-103 chr19 30539048 30539348 + 2 NA intron (NM_014717, intron 3 of 4) MLT2B4|LTR|ERVL 166814 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 249-85 chr12 18357696 18357871 + 2 NA intron (NM_004570, intron 11 of 31) L1MB1|LINE|L1 96243 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 229-214 chr2 193532487 193532626 + 2 NA Intergenic Intergenic 782711 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 313-519 chr8 67657485 67657678 + 2 NA intron (NM_020361, intron 1 of 10) L2b|LINE|L2 88779 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 344-366 chr4 126598685 126598963 + 2 NA Intergenic Intergenic -1034133 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 527-234 chr6 152712768 152713056 + 2 NA intron (NM_025107, intron 1 of 1) L1MEf|LINE|L1 15017 NM_025107 80177 Hs.18160 NM_025107 ENSG00000120279 MYCT1 MTLC MYC target 1 protein-coding 283-395 chr6 86802719 86802979 + 2 NA Intergenic L1MA2|LINE|L1 -134679 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 236-258 chr4 80020135 80020274 + 2 NA intron (NM_001286781, intron 10 of 16) AluJo|SINE|Alu 53025 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 248-373 chr7 40275751 40275934 + 2 NA intron (NM_024728, intron 8 of 14) intron (NM_024728, intron 8 of 14) 140866 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 256-9 chr1 71356051 71356270 + 2 NA Intergenic L1PA16|LINE|L1 274836 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 525-274 chr8 139501915 139502267 + 2 NA Intergenic Intergenic 201032 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 294-407 chr6 78464077 78464313 + 2 NA Intergenic Intergenic 75114 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 260-149 chr15 79739858 79740078 + 2 NA Intergenic MIRb|SINE|MIR 157029 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 256-179 chr19 28755532 28755773 + 2 NA Intergenic L1PA13|LINE|L1 -27958 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 626-58 chr2 7029385 7029846 + 2 NA intron (NM_001349186, intron 6 of 7) intron (NM_001349186, intron 6 of 7) 48265 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 295-129 chr14 53796628 53796914 + 2 NA Intergenic Intergenic 151713 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 347-200 chr2 24149160 24149409 + 2 NA intron (NM_001145710, intron 7 of 10) L1MA2|LINE|L1 -25769 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 705-43 chr18 21181701 21182301 + 2 NA Intergenic AluJr|SINE|Alu -60241 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 207-243 chr5 75441505 75441655 + 2 NA intron (NM_031361, intron 3 of 16) L1MB2|LINE|L1 70049 NM_005713 10087 Hs.270437 NM_005713 ENSG00000113163 CERT1 CERT|CERTL|COL4A3BP|GPBP|MRD34|STARD11 ceramide transporter 1 protein-coding 494-93 chr17 58605634 58605914 + 2 NA intron (NM_031272, intron 10 of 31) L2a|LINE|L2 -61446 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 774-36 chr18 79813198 79813830 + 2 NA Intergenic L1MD2|LINE|L1 -50154 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 217-208 chr20 59169056 59169211 + 2 NA Intergenic L1MD1|LINE|L1 -21887 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 399-321 chr9 8215486 8215843 + 2 NA Intergenic L1MB8|LINE|L1 -415886 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 365-344 chr6 44941627 44941934 + 2 NA intron (NM_181356, intron 11 of 12) intron (NM_181356, intron 11 of 12) 255990 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 271-436 chr8 79271693 79271875 + 2 NA Intergenic Intergenic -60404 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 453-231 chr6 86580178 86580547 + 2 NA Intergenic L1PB1|LINE|L1 -357166 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 208-159 chr3 5546827 5547010 + 2 NA Intergenic L1M2a|LINE|L1 -296663 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 256-85 chr12 25951293 25951494 + 2 NA Intergenic MER57A-int|LTR|ERV1 6192 NR_038227 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 398-361 chr8 113624050 113624423 + 2 NA Intergenic Intergenic -187297 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 403-329 chr9 134438227 134438501 + 2 NA 3' UTR (NM_001291920, exon 10 of 10) 3' UTR (NM_001291920, exon 10 of 10) 31804 NM_001291921 6256 Hs.590886 NM_002957 ENSG00000186350 RXRA NR2B1 retinoid X receptor alpha protein-coding 155-23 chr10 63934952 63935050 + 2 NA Intergenic Intergenic -413111 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 576-39 chr13 28830696 28831094 + 2 NA intron (NM_001366651, intron 1 of 14) L1MB7|LINE|L1 10556 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 473-26 chr10 17449458 17449782 + 2 NA intron (NM_001004470, intron 2 of 7) LTR81B|LTR|Gypsy 4975 NM_001345961 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 296-136 chr14 43816395 43816558 + 2 NA Intergenic Intergenic 690807 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 320-583 chr8 139658117 139658299 + 2 NA intron (NR_104210, intron 1 of 3) LTR33|LTR|ERVL 44915 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 257-205 chr2 124991550 124991738 + 2 NA Intergenic MER41-int|LTR|ERV1 966357 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 316-543 chr8 66261989 66262182 + 2 NA Intergenic L1MA8|LINE|L1 69971 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 266-209 chr2 212050729 212050986 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 375503 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 289-142 chr14 84070151 84070323 + 2 NA Intergenic Intergenic -1201695 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 349-508 chr8 116290385 116290573 + 2 NA intron (NR_046215, intron 1 of 13) intron (NR_046215, intron 1 of 13) 34580 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 223-119 chr17 55548801 55548982 + 2 NA Intergenic Intergenic -127056 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 527-81 chr14 40474023 40474403 + 2 NA Intergenic L1ME3|LINE|L1 -480498 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 251-419 chr9 88281323 88281568 + 2 NA Intergenic Intergenic -106999 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 273-432 chr7 111663077 111663295 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -100669 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 242-40 chr10 66635166 66635352 + 2 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -290777 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 338-568 chr8 137214572 137214867 + 2 NA Intergenic Intergenic 198869 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 170-145 chr8 144976315 144976449 + 2 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -18483 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 437-248 chr7 4252954 4253270 + 2 NA intron (NM_001079653, intron 18 of 19) L1MB7|LINE|L1 -118275 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 227-56 chr11 4790319 4790473 + 2 NA Intergenic Intergenic 13984 NM_001005177 119695 Hs.553563 NM_001005177 ENSG00000279270 OR52R1 OR11-22 olfactory receptor family 52 subfamily R member 1 (gene/pseudogene) protein-coding 302-296 chr3 117319463 117319700 + 2 NA Intergenic L1M3d|LINE|L1 371344 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 277-195 chr2 73663981 73664251 + 2 NA intron (NR_003683, intron 1 of 6) intron (NR_003683, intron 1 of 6) 19197 NR_003683 200420 Hs.739204 NM_145300 ENSG00000163016 ALMS1P1 ALMS1L|ALMS1P ALMS1 pseudogene 1 pseudo 243-96 chr12 65523070 65523267 + 2 NA intron (NR_120431, intron 2 of 3) intron (NR_120431, intron 2 of 3) 34143 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 924-37 chr7 53261616 53262338 + 2 NA Intergenic Intergenic 226344 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 826-25 chr19 44093073 44093657 + 2 NA promoter-TSS (NM_001321645) promoter-TSS (NM_001321645) -996 NM_013398 7767 Hs.585869 NM_013398 ENSG00000267680 ZNF224 BMZF-2|BMZF2|KOX22|ZNF233|ZNF255|ZNF27 zinc finger protein 224 protein-coding 347-536 chr8 137441869 137442171 + 2 NA Intergenic LTR1B|LTR|ERV1 -28432 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 477-200 chr3 58480216 58480576 + 2 NA Intergenic L1MA4|LINE|L1 -11700 NM_001128214 200845 Hs.13982 NM_153331 ENSG00000168301 KCTD6 KCASH3 potassium channel tetramerization domain containing 6 protein-coding 254-431 chr8 138301159 138301360 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 196002 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 320-582 chr8 139154160 139154376 + 2 NA Intergenic Intergenic -240227 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 694-135 chrX 17506710 17507174 + 2 NA intron (NM_198270, intron 1 of 7) intron (NM_198270, intron 1 of 7) -21493 NR_135631 101928389 Hs.686933 NR_135631 ENSG00000235834 LOC101928389 - uncharacterized LOC101928389 ncRNA 690-15 chr11 7052097 7052632 + 2 NA intron (NM_176822, intron 6 of 11) AluSz6|SINE|Alu 31895 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 312-506 chr8 30146831 30147008 + 2 NA Intergenic Intergenic -2254 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 FKSG89|GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 241-43 chr10 78664754 78664913 + 2 NA Intergenic Intergenic 397491 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 344-126 chr14 20993010 20993244 + 2 NA exon (NM_001029991, exon 6 of 13) exon (NM_001029991, exon 6 of 13) 3147 NM_022734 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 224-40 chr10 113907801 113907976 + 2 NA intron (NM_198514, intron 10 of 10) intron (NM_198514, intron 10 of 10) 53227 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 285-318 chr5 2086018 2086192 + 2 NA Intergenic L1MEc|LINE|L1 198774 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 325-558 chr8 134928230 134928476 + 2 NA Intergenic Intergenic 78418 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 486-244 chr5 102082473 102082848 + 2 NA Intergenic L1PA15|LINE|L1 213624 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 275-96 chr13 107088512 107088707 + 2 NA Intergenic Intergenic 232354 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 707-34 chr15 79148154 79148585 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -57589 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 253-12 chr1 98199425 98199655 + 2 NA Intergenic Intergenic -11171 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 200-71 chr14 40958216 40958345 + 2 NA intron (NR_109758, intron 1 of 3) intron (NR_109758, intron 1 of 3) 3569 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 165-67 chr20 52522586 52522745 + 2 NA Intergenic L1MD1|LINE|L1 -98173 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 250-112 chr13 107476951 107477127 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 54209 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 342-72 chr10 76414123 76414378 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -473794 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 425-204 chr4 61884224 61884542 + 2 NA intron (NM_001371343, intron 9 of 23) L2a|LINE|L2 277382 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 548-159 chr4 7572324 7572829 + 2 NA intron (NM_020777, intron 3 of 26) Charlie7|DNA|hAT-Charlie 112548 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 774-17 chr12 9079534 9080262 + 2 NA intron (NM_000014, intron 23 of 35) intron (NM_000014, intron 23 of 35) 14721 NR_137425 144571 Hs.592432 NR_026971 ENSG00000245105 A2M-AS1 - A2M antisense RNA 1 ncRNA 334-390 chr4 108248401 108248651 + 2 NA Intergenic Intergenic 76406 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 407-17 chr1 208940744 208941046 + 2 NA Intergenic Intergenic -31559 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 227-22 chr1 221568364 221568552 + 2 NA Intergenic Intergenic 168442 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 178-136 chr7 94498590 94498718 + 2 NA Intergenic MIRb|SINE|MIR -11155 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 347-470 chr7 50701111 50701424 + 2 NA intron (NM_001371009, intron 2 of 15) intron (NM_001371009, intron 2 of 15) 4034 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 369-215 chr2 132459538 132459785 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 25950 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 579-107 chr3 161888884 161889200 + 2 NA Intergenic Intergenic 392234 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 827-42 chr5 53833386 53833917 + 2 NA Intergenic L1MC5|LINE|L1 -13969 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 391-213 chr20 54427208 54427459 + 2 NA Intergenic Intergenic -48260 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 547-261 chr9 27326034 27326502 + 2 NA 3' UTR (NM_024761, exon 4 of 4) 3' UTR (NM_024761, exon 4 of 4) -29118 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 188-165 chr5 44676189 44676306 + 2 NA Intergenic AluJb|SINE|Alu 132546 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 376-293 chr4 112607932 112608157 + 2 NA intron (NM_018392, intron 8 of 27) intron (NM_018392, intron 8 of 27) -28920 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 242-155 chr19 33609217 33609396 + 2 NA Intergenic HAL1M8|LINE|L1 -12647 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 380-79 chr11 126151635 126151933 + 2 NA Intergenic Intergenic 59866 NM_001363516 84881 Hs.150458 NM_032795 ENSG00000165526 RPUSD4 - RNA pseudouridine synthase D4 protein-coding 261-89 chr13 74593069 74593314 + 2 NA Intergenic Intergenic 40348 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 466-112 chr19 34750700 34751062 + 2 NA Intergenic HERVL74-int|LTR|ERVL 16638 NM_001029997 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 203-199 chr6 50104636 50104764 + 2 NA Intergenic Intergenic -54771 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 422-189 chr3 88166689 88167007 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie 16889 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 274-282 chr4 57150340 57150512 + 2 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -40041 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 436-73 chr13 29135457 29135743 + 2 NA intron (NM_001033602, intron 3 of 13) L1MB3|LINE|L1 111143 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 249-108 chr14 19904351 19904535 + 2 NA Intergenic Intergenic -16164 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 382-172 chr2 18715477 18715766 + 2 NA Intergenic LTR56|LTR|ERV1 -126041 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 268-192 chr2 56965219 56965376 + 2 NA Intergenic MIR|SINE|MIR -779527 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 323-151 chr14 73523665 73523902 + 2 NA intron (NM_203309, intron 1 of 16) L2b|LINE|L2 -13360 NM_001037161 641371 Hs.446685 NM_001037161 ENSG00000184227 ACOT1 ACH2|CTE-1|LACH2 acyl-CoA thioesterase 1 protein-coding 645-9 chr10 52640279 52640704 + 2 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 114913 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 569-34 chr10 130722551 130723088 + 2 NA Intergenic MER4D1|LTR|ERV1 239849 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 355-156 chr14 65870115 65870373 + 2 NA Intergenic MIRb|SINE|MIR 399142 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 222-369 chr8 92753828 92753994 + 2 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 32149 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 444-255 chr8 65158149 65158445 + 2 NA Intergenic Intergenic 22043 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 317-176 chr15 96759960 96760131 + 2 NA Intergenic Intergenic 21609 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 263-424 chr8 105233052 105233248 + 2 NA Intergenic L1MDa|LINE|L1 -85288 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 271-434 chr8 74477185 74477324 + 2 NA intron (NM_001362931, intron 5 of 5) L1PA13|LINE|L1 -71289 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 270-242 chr3 97503110 97503315 + 2 NA intron (NM_001080448, intron 10 of 17) L1M5|LINE|L1 63605 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 348-5 chr1 56877911 56878184 + 2 NA intron (NM_000562, intron 4 of 10) MLT1B|LTR|ERVL-MaLR 23277 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 242-128 chr16 67075500 67075667 + 2 NA intron (NM_001755, intron 4 of 5) L1ME3A|LINE|L1 -34358 NM_001320542 80262 Hs.513666 NM_025187 ENSG00000125149 C16orf70 C16orf6|LIN10|lin-10 chromosome 16 open reading frame 70 protein-coding 267-175 chr2 36627091 36627254 + 2 NA Intergenic LTR49-int|LTR|ERV1 -29004 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 340-33 chr1 228699543 228699856 + 2 NA intron (NR_037962, intron 1 of 2) MER57A-int|LTR|ERV1 -35780 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 292-87 chr11 130362397 130362620 + 2 NA intron (NR_148980, intron 1 of 6) L1MB4|LINE|L1 47515 NR_148980 646383 Hs.155288 NM_001039787 ENSG00000175773 ZBTB44-DT - ZBTB44 divergent transcript ncRNA 413-297 chr8 42920554 42920835 + 2 NA intron (NM_032410, intron 2 of 21) intron (NM_032410, intron 2 of 21) 23716 NM_032410 84376 Hs.162852 NM_032410 ENSG00000168172 HOOK3 HK3 hook microtubule tethering protein 3 protein-coding 192-30 chr10 111995979 111996144 + 2 NA Intergenic Intergenic 187704 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 372-104 chr12 18342906 18343261 + 2 NA intron (NM_001288774, intron 9 of 32) intron (NM_001288774, intron 9 of 32) 81543 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 306-135 chr14 24886874 24887109 + 2 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 162009 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 744-36 chr2 185528851 185529316 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 209636 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 448-267 chr7 89147857 89148158 + 2 NA intron (NM_181646, intron 1 of 3) MER1A|DNA|hAT-Charlie -352270 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 497-7 chr1 98647582 98647956 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -13952 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 478-288 chr8 77585098 77585524 + 2 NA Intergenic Intergenic 134614 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 501-245 chr7 77317594 77318037 + 2 NA intron (NR_146937, intron 26 of 31) intron (NR_146937, intron 26 of 31) -97383 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 175-6 chr1 85620149 85620255 + 2 NA Intergenic MIR|SINE|MIR 39441 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 226-230 chr3 103800169 103800331 + 2 NA Intergenic L1MD1|LINE|L1 -276134 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 296-379 chr5 105007790 105008027 + 2 NA Intergenic Intergenic -91566 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 267-184 chr2 56411555 56411753 + 2 NA Intergenic Intergenic -225884 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 574-37 chr14 20738600 20739052 + 2 NA Intergenic MER34C_|LTR|ERV1 -7061 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 218-241 chr4 60874328 60874486 + 2 NA Intergenic L1MB7|LINE|L1 -48212 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 400-312 chr6 132192519 132192848 + 2 NA Intergenic MER131|DNA?|DNA? 58705 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 351-365 chr5 3997955 3998207 + 2 NA Intergenic Intergenic 402249 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 139-40 chr18 51290999 51291108 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -93372 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 358-51 chr10 76959055 76959335 + 2 NA intron (NM_001271519, intron 20 of 28) intron (NM_001271519, intron 20 of 28) 71151 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 234-369 chr7 53173670 53173878 + 2 NA Intergenic L1MB1|LINE|L1 138141 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 445-124 chr2 86642909 86643247 + 2 NA intron (NM_001198954, intron 2 of 7) L1MC4a|LINE|L1 -19201 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 381-288 chr4 179092897 179093260 + 2 NA Intergenic L1MD1|LINE|L1 -1185142 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 229-362 chr7 54531853 54532075 + 2 NA Intergenic L1ME3A|LINE|L1 -10361 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 330-23 chr1 86250845 86251082 + 2 NA Intergenic L1MB7|LINE|L1 -93979 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 222-278 chr4 167995067 167995235 + 2 NA Intergenic L1M1|LINE|L1 -97386 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 553-174 chr4 52331040 52331500 + 2 NA Intergenic Intergenic 279966 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 162-53 chr2 21309725 21309882 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 185817 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 355-208 chr18 4137432 4137717 + 2 NA intron (NM_001242761, intron 2 of 11) L1MA1|LINE|L1 -127028 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 364-222 chr2 123583589 123583898 + 2 NA Intergenic L2a|LINE|L2 441431 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 446-47 chr10 66604138 66604486 + 2 NA intron (NM_001127384, intron 10 of 17) L1PA13|LINE|L1 -321724 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 373-96 chr12 119428364 119428573 + 2 NA intron (NM_178499, intron 1 of 13) MIRb|SINE|MIR 93739 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 253-137 chr14 82374289 82374482 + 2 NA Intergenic L1MA2|LINE|L1 -268247 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 254-52 chr11 21045778 21046017 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 376311 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 444-252 chr8 37276057 37276415 + 2 NA Intergenic Intergenic 217677 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 400-317 chr7 18258564 18258875 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -31373 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 193-123 chr2 192325616 192325755 + 2 NA Intergenic Intergenic -130752 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 312-118 chr12 128754771 128754979 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 69083 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 594-123 chr5 162029843 162030180 + 2 NA Intergenic HERVL-int|LTR|ERVL -28815 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 295-244 chr2 211593317 211593596 + 2 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 832904 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 369-153 chr16 86741299 86741610 + 2 NA Intergenic Intergenic 19363 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 319-399 chr5 15084739 15084934 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 181724 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 473-301 chr9 106001775 106002136 + 2 NA Intergenic Intergenic 307414 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 439-103 chr17 12751893 12752191 + 2 NA intron (NM_001146312, intron 9 of 13) intron (NM_001146312, intron 9 of 13) -37456 NR_135569 9912 Hs.499758 NM_014859 ENSG00000006740 ARHGAP44 NPC-A-10|RICH2 Rho GTPase activating protein 44 protein-coding 134-18 chr11 97906929 97907028 + 2 NA Intergenic Intergenic -1113971 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 374-341 chr6 81921871 81922231 + 2 NA intron (NR_149135, intron 3 of 3) L1MD1|LINE|L1 11429 NR_149136 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 311-135 chr14 51125755 51125947 + 2 NA Intergenic L1PB1|LINE|L1 -30147 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 383-412 chr9 31081350 31081610 + 2 NA Intergenic Intergenic 300010 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 259-61 chr10 113311702 113311950 + 2 NA Intergenic Intergenic 182555 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 213-271 chr8 32600369 32600555 + 2 NA intron (NM_001160001, intron 1 of 9) intron (NM_001160001, intron 1 of 9) 4636 NM_001322202 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 315-76 chr11 9111198 9111427 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 16949 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 129-30 chr19 36452045 36452168 + 2 NA intron (NM_001145345, intron 4 of 4) intron (NM_001145345, intron 4 of 4) 30932 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 735-89 chrX 23566694 23567286 + 2 NA Intergenic L2|LINE|L2 -100503 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 195-81 chr17 40765671 40765827 + 2 NA TTS (NM_181539) TTS (NM_181539) 6410 NM_181539 353288 Hs.592133 NM_181539 ENSG00000186393 KRT26 CK26|K25|K25IRS2|K26|KRT25B keratin 26 protein-coding 439-183 chr3 71616002 71616416 + 2 NA Intergenic Intergenic -32220 NM_001244810 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 287-181 chr19 44560127 44560276 + 2 NA Intergenic L1MD2|LINE|L1 -3284 NR_027754 388550 Hs.446909 NR_027754 ENSG00000230666 CEACAM22P - carcinoembryonic antigen related cell adhesion molecule 22, pseudogene pseudo 576-82 chr2 52945795 52946260 + 2 NA Intergenic L2b|LINE|L2 -243412 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 268-363 chr7 26973115 26973297 + 2 NA Intergenic L1PA13|LINE|L1 -108616 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 649-76 chr3 184964178 184964671 + 2 NA intron (NM_001009921, intron 36 of 46) intron (NM_001009921, intron 36 of 46) 151917 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 254-435 chr8 142605790 142605929 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 8620 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 525-254 chr8 34340563 34341079 + 2 NA Intergenic Intergenic -443100 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 554-110 chr2 31744090 31744513 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 59679 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 362-420 chr7 145043606 145043799 + 2 NA Intergenic Intergenic -207649 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 301-345 chr5 19346448 19346707 + 2 NA Intergenic Intergenic 539695 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 359-127 chr12 129879773 129879971 + 2 NA intron (NM_133448, intron 1 of 8) L1ME1|LINE|L1 24153 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 322-125 chr12 55596018 55596308 + 2 NA Intergenic L1M1|LINE|L1 21748 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 653-41 chr14 66495425 66495936 + 2 NA intron (NR_024338, intron 8 of 10) intron (NR_024338, intron 8 of 10) 9309 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 147-73 chr5 77697036 77697138 + 2 NA intron (NM_004607, intron 2 of 3) L1MD|LINE|L1 -58390 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 129-25 chr17 2086996 2087086 + 2 NA intron (NM_001256827, intron 6 of 11) intron (NM_001256827, intron 6 of 11) 1720 NM_001282326 23293 Hs.448342 NM_017575 ENSG00000070366 SMG6 C17orf31|EST1A|SMG-6|hSMG5/7a SMG6 nonsense mediated mRNA decay factor protein-coding 599-54 chr19 46325631 46326179 + 2 NA intron (NM_152796, intron 10 of 11) (GGAT)n|Simple_repeat|Simple_repeat -21182 NM_001204284 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 170-47 chr14 66714099 66714208 + 2 NA intron (NM_001024218, intron 2 of 21) L1PBa|LINE|L1 206746 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 293-277 chr3 139074580 139074864 + 2 NA Intergenic L1MA4|LINE|L1 -29463 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 503-244 chr6 65977145 65977642 + 2 NA Intergenic L1ME2z|LINE|L1 189514 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 314-95 chr11 38883198 38883387 + 2 NA Intergenic Intergenic 234434 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 394-149 chr19 27677843 27678040 + 2 NA Intergenic HSAT4|Satellite|centr -115490 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 367-80 chr11 98754419 98754730 + 2 NA Intergenic HAL1|LINE|L1 -266375 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 377-135 chr15 67907640 67907961 + 2 NA Intergenic MER21-int|LTR|ERVL -67755 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 465-258 chr6 132356762 132357070 + 2 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 44559 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 400-24 chr1 219135754 219135988 + 2 NA intron (NR_038845, intron 3 of 4) L1MB2|LINE|L1 37917 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 535-164 chr3 55342429 55342910 + 2 NA Intergenic MIRc|SINE|MIR 138729 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 342-301 chr22 39583530 39583819 + 2 NA intron (NM_001003406, intron 1 of 35) intron (NM_001003406, intron 1 of 35) 12921 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 203-176 chr5 22657880 22658043 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 195383 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 322-235 chr2 28839314 28839539 + 2 NA intron (NM_001008779, intron 4 of 4) intron (NM_001008779, intron 4 of 4) 23429 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 351-416 chr6 45370572 45370769 + 2 NA intron (NM_181356, intron 1 of 12) intron (NM_181356, intron 1 of 12) 6848 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 312-238 chr2 76530383 76530583 + 2 NA Intergenic Intergenic -455482 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 207-45 chr10 117915434 117915591 + 2 NA Intergenic HAL1b|LINE|L1 -131309 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 495-235 chr7 46367337 46367814 + 2 NA Intergenic L1MC4a|LINE|L1 329547 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 557-189 chr7 92164990 92165411 + 2 NA promoter-TSS (NM_001161528) promoter-TSS (NM_001161528) 76 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 376-390 chr7 106538037 106538271 + 2 NA Intergenic MER58D|DNA|hAT-Charlie 123004 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 331-549 chr9 12116116 12116397 + 2 NA Intergenic Intergenic -577129 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 247-200 chr2 80905424 80905651 + 2 NA Intergenic Intergenic 561409 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 384-87 chr12 86523003 86523246 + 2 NA intron (NM_001351285, intron 2 of 8) L1PA13|LINE|L1 222025 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 606-99 chr20 57465761 57466192 + 2 NA Intergenic MIRc|SINE|MIR 58891 NR_072975 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 221-192 chr3 96329093 96329214 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -30811 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 272-384 chr6 55683580 55683803 + 2 NA Intergenic L1MC5|LINE|L1 -104477 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 228-200 chr21 27060459 27060590 + 2 NA Intergenic HAL1|LINE|L1 -93436 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 278-415 chr8 86285801 86285999 + 2 NA Intergenic Intergenic -55519 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 260-265 chr3 56180961 56181146 + 2 NA intron (NR_132749, intron 3 of 17) L1ME3Cz|LINE|L1 287414 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 638-74 chr2 142042643 142043166 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 88797 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 190-12 chr10 22934717 22934868 + 2 NA intron (NM_001282747, intron 2 of 15) MIR|SINE|MIR 6739 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 205-8 chr1 38377198 38377364 + 2 NA Intergenic Intergenic -97915 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 246-422 chr8 129518740 129518905 + 2 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -34680 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 222-132 chr16 61912752 61912895 + 2 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 123615 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 262-252 chr20 52535627 52535824 + 2 NA Intergenic Intergenic -85113 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 454-145 chr2 44480240 44480614 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 118480 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 649-12 chr11 50231281 50231860 + 2 NA Intergenic AluSg|SINE|Alu 66892 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 313-510 chr7 124631648 124631894 + 2 NA Intergenic L1MA8|LINE|L1 134021 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 384-306 chr5 155107012 155107226 + 2 NA Intergenic Intergenic 93364 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 141-67 chr4 60272569 60272662 + 2 NA Intergenic Intergenic -650004 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 375-91 chr12 4222166 4222497 + 2 NA Intergenic L1MB4|LINE|L1 -51431 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 484-127 chr2 59575694 59576020 + 2 NA Intergenic L3|LINE|CR1 358149 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 475-203 chr4 45086520 45086857 + 2 NA Intergenic Intergenic -360054 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 180-3 chr1 70775287 70775397 + 2 NA intron (NR_125938, intron 5 of 6) MER66-int|LTR|ERV1 68889 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 288-229 chr20 42046172 42046406 + 2 NA Intergenic Intergenic -427912 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 267-441 chr8 144937903 144938139 + 2 NA intron (NM_006958, intron 2 of 2) L1MB5|LINE|L1 12859 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 203-60 chr14 50975774 50975942 + 2 NA 3' UTR (NM_015163, exon 10 of 10) 3' UTR (NM_015163, exon 10 of 10) -31375 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 465-248 chr6 894258 894564 + 2 NA Intergenic (CAT)n|Simple_repeat|Simple_repeat 25913 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 299-103 chr12 59156377 59156568 + 2 NA Intergenic Intergenic -235934 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 466-157 chr20 51045490 51045771 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -22523 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 208-104 chr19 32891966 32892119 + 2 NA intron (NM_032816, intron 16 of 18) L1M2|LINE|L1 -22275 NM_001126335 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 643-99 chr5 129099106 129099725 + 2 NA intron (NM_016048, intron 1 of 4) intron (NM_016048, intron 1 of 4) 1727 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 287-105 chr12 5130858 5131032 + 2 NA Intergenic Intergenic 87066 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 354-422 chr7 19909592 19909857 + 2 NA Intergenic L1MA3|LINE|L1 -136107 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 174-112 chr5 99892242 99892363 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 358312 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 313-548 chr8 141472149 141472352 + 2 NA intron (NR_102364, intron 14 of 26) intron (NR_102364, intron 14 of 26) 34979 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 266-112 chr14 47501607 47501830 + 2 NA intron (NM_001113498, intron 1 of 16) MLT1B|LTR|ERVL-MaLR -158472 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 254-436 chr9 7328602 7328790 + 2 NA Intergenic LTR40a|LTR|ERVL 471082 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 252-29 chr10 9009132 9009287 + 2 NA Intergenic Intergenic 111220 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 303-439 chr8 9654111 9654335 + 2 NA intron (NM_003747, intron 3 of 26) intron (NM_003747, intron 3 of 26) -87449 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 234-104 chr14 75612007 75612160 + 2 NA intron (NM_001195283, intron 1 of 9) LTR54|LTR|ERV1 6543 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 474-183 chr3 97140055 97140451 + 2 NA intron (NM_001080448, intron 3 of 17) L1PA15-16|LINE|L1 -299354 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 399-203 chr3 32116913 32117154 + 2 NA intron (NM_015141, intron 1 of 7) intron (NM_015141, intron 1 of 7) 10522 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 468-222 chr4 49093542 49093964 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 107111 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 180-178 chr9 27492940 27493038 + 2 NA intron (NM_024761, intron 1 of 3) MIRb|SINE|MIR -31325 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 372-523 chrX 47291113 47291394 + 2 NA Intergenic HERVFH19-int|LTR|ERV1 58244 NM_001371072 590-82 chr2 135086080 135086469 + 2 NA intron (NM_001172435, intron 3 of 24) L1ME2|LINE|L1 33982 NM_001172435 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 352-214 chr2 7801314 7801599 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 98199 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 124-14 chr11 80877611 80877688 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -114846 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 577-41 chr11 38161068 38161437 + 2 NA Intergenic L1MC3|LINE|L1 222651 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 411-161 chr20 45520297 45520670 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -4861 NM_006652 10816 Hs.370724 NM_006652 ENSG00000101446 SPINT3 HKIB9 serine peptidase inhibitor, Kunitz type 3 protein-coding 341-354 chr3 174665996 174666259 + 2 NA Intergenic Intergenic -193207 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 305-414 chr4 172533693 172533940 + 2 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 155101 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 316-118 chr11 128785119 128785344 + 2 NA intron (NM_001167681, intron 6 of 9) intron (NM_001167681, intron 6 of 9) 57238 NM_000220 3758 Hs.527830 NM_000220 ENSG00000151704 KCNJ1 KIR1.1|ROMK|ROMK1 potassium voltage-gated channel subfamily J member 1 protein-coding 578-193 chr9 31463568 31463963 + 2 NA Intergenic L1MCb|LINE|L1 -82275 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 215-4 chr1 55590655 55590822 + 2 NA Intergenic L1MB2|LINE|L1 354225 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 413-154 chr2 152614587 152614928 + 2 NA intron (NM_052905, intron 11 of 25) AluSg|SINE|Alu 102704 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 394-199 chr20 19096850 19097233 + 2 NA Intergenic Intergenic -115601 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 308-357 chr4 117118202 117118471 + 2 NA Intergenic MER52-int|LTR|ERV1 -32760 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 610-56 chr15 52478505 52478900 + 2 NA intron (NM_001142495, intron 1 of 39) Tigger2|DNA|TcMar-Tigger 50178 NM_001142495 4644 Hs.21213 NM_000259 ENSG00000197535 MYO5A GS1|MYH12|MYO5|MYR12 myosin VA protein-coding 324-519 chr8 49134008 49134209 + 2 NA Intergenic Intergenic 61764 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 454-152 chr2 67384799 67385228 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -12320 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 358-457 chr7 140294344 140294617 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 104050 NR_156491 84255 Hs.446021 NM_032295 ENSG00000157800 SLC37A3 - solute carrier family 37 member 3 protein-coding 430-7 chr1 104631249 104631593 + 2 NA Intergenic Intergenic 558398 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 544-127 chr2 152345693 152346014 + 2 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 10679 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 230-114 chr14 62631922 62632096 + 2 NA Intergenic L2|LINE|L2 413449 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 202-73 chr14 67516903 67517053 + 2 NA intron (NM_001348546, intron 1 of 2) MIRb|SINE|MIR -1493 NM_001348548 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 294-203 chr2 37587389 37587593 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 84708 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 374-431 chrX 99649125 99649406 + 2 NA Intergenic Intergenic 761008 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 164-112 chr8 106473318 106473406 + 2 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 25438 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 661-79 chr5 43877353 43877833 + 2 NA Intergenic Intergenic -274363 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 194-70 chr16 58802872 58802985 + 2 NA Intergenic L1MCa|LINE|L1 -68612 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 279-222 chr20 44235820 44236036 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -11171 NM_001256738 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 161-25 chr13 97980308 97980388 + 2 NA intron (NM_002271, intron 4 of 28) intron (NM_002271, intron 4 of 28) 26673 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 329-64 chr10 80971950 80972169 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 322262 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 389-84 chr12 103449795 103450072 + 2 NA intron (NR_103526, intron 2 of 10) L1ME3F|LINE|L1 46035 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 498-189 chr4 45704216 45704611 + 2 NA Intergenic L1ME2|LINE|L1 419641 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 408-133 chr16 79827178 79827573 + 2 NA Intergenic Intergenic 32126 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 496-72 chr14 20066775 20067099 + 2 NA Intergenic L1PA15|LINE|L1 6892 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 273-96 chr12 18194182 18194417 + 2 NA Intergenic L1MEg|LINE|L1 -67241 NM_001288772 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 314-569 chr8 83023003 83023187 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 110991 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 237-123 chr15 85903680 85903852 + 2 NA Intergenic Intergenic 78131 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 159-39 chr2 30711417 30711543 + 2 NA Intergenic MIRb|SINE|MIR 95966 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 348-257 chr20 7097604 7097840 + 2 NA Intergenic L1MA1|LINE|L1 156480 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 223-85 chr14 49644449 49644603 + 2 NA intron (NM_001348385, intron 18 of 18) intron (NM_001348385, intron 18 of 18) -9296 NM_001083908 55172 Hs.231761 NM_018139 ENSG00000165506 DNAAF2 C14orf104|CILD10|KTU|PF13 dynein axonemal assembly factor 2 protein-coding 349-276 chr2 133390743 133390940 + 2 NA intron (NM_207481, intron 3 of 17) MER5B|DNA|hAT-Charlie 124646 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 357-313 chr4 72764674 72764960 + 2 NA Intergenic Intergenic -195596 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 373-356 chr6 62438774 62439035 + 2 NA Intergenic L1PB1|LINE|L1 -152677 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 454-346 chr9 118754692 118754941 + 2 NA Intergenic L1MCa|LINE|L1 75145 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 368-488 chr9 111948689 111948996 + 2 NA Intergenic AluSz|SINE|Alu 16742 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 249-318 chr5 7119610 7119798 + 2 NA Intergenic Intergenic 149650 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 390-2 chr1 13856822 13857171 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 107581 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 233-278 chr4 156459578 156459792 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -505819 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 395-238 chr3 177267102 177267478 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -27152 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 400-97 chr14 66463059 66463401 + 2 NA Intergenic MIRb|SINE|MIR -23141 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 383-38 chr10 90229283 90229608 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -272072 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 362-91 chr11 76567306 76567538 + 2 NA Intergenic AluSx|SINE|Alu 102516 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 293-473 chr9 82962923 82963103 + 2 NA Intergenic MIR|SINE|MIR 100129 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 290-207 chr2 63628330 63628587 + 2 NA Intergenic Intergenic 39307 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 349-30 chr1 176286655 176286997 + 2 NA Intergenic L1PA15|LINE|L1 -79540 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 340-515 chr7 110201057 110201371 + 2 NA Intergenic L1MA2|LINE|L1 -241001 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 372-360 chr4 64028258 64028577 + 2 NA Intergenic L1M1|LINE|L1 381033 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 527-136 chr2 100226696 100227043 + 2 NA intron (NR_103730, intron 1 of 2) L1MC|LINE|L1 18615 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 352-495 chr7 46392008 46392328 + 2 NA Intergenic FLAM_A|SINE|Alu 304954 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 244-278 chr4 150566656 150566877 + 2 NA intron (NM_001367550, intron 40 of 56) intron (NM_001367550, intron 40 of 56) -12323 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 228-321 chr7 72419397 72419570 + 2 NA intron (NM_001363460, intron 1 of 5) intron (NM_001363460, intron 1 of 5) -7145 NM_031468 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 237-357 chr7 81832693 81832846 + 2 NA Intergenic L1MCa|LINE|L1 -62722 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 413-330 chrX 10397254 10397546 + 2 NA Intergenic HAL1|LINE|L1 170203 NM_001193281 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 493-200 chr3 72077039 72077410 + 2 NA intron (NR_104116, intron 2 of 6) MLT1D-int|LTR|ERVL-MaLR 23231 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 222-279 chr4 176450390 176450554 + 2 NA Intergenic Intergenic 130506 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 187-7 chr1 51027819 51027968 + 2 NA Intergenic L1M4a1|LINE|L1 -31944 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 510-193 chr3 175941915 175942263 + 2 NA Intergenic L1M2|LINE|L1 -165756 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 234-253 chr3 113185660 113185853 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -18025 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 325-562 chr8 139605614 139605799 + 2 NA intron (NR_104210, intron 3 of 3) intron (NR_104210, intron 3 of 3) 97417 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 373-358 chr6 65376312 65376540 + 2 NA intron (NM_198283, intron 7 of 9) L1PA8|LINE|L1 75008 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 240-295 chr3 139920012 139920163 + 2 NA Intergenic L1ME3B|LINE|L1 -15098 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 354-150 chr15 26680087 26680327 + 2 NA intron (NM_001278631, intron 3 of 9) MLT2D|LTR|ERVL 36558 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 282-320 chr3 193896667 193896913 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -52781 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 203-137 chr22 34042985 34043173 + 2 NA Intergenic AluSz|SINE|Alu -120191 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 175-65 chr18 4788091 4788239 + 2 NA Intergenic L1MEc|LINE|L1 -293017 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 141-19 chr11 115785560 115785688 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -25424 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 199-141 chr20 16920665 16920807 + 2 NA Intergenic MER113|DNA|hAT-Charlie 172383 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 203-204 chr6 108448005 108448155 + 2 NA intron (NR_136553, intron 4 of 8) intron (NR_136553, intron 4 of 8) -111745 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 258-68 chr11 72385242 72385438 + 2 NA intron (NM_001258393, intron 2 of 14) intron (NM_001258393, intron 2 of 14) 49191 NM_001258392 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 188-11 chr1 157184195 157184355 + 2 NA Intergenic AluJb|SINE|Alu -45684 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 326-105 chr11 82770559 82770815 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -36823 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 365-112 chr13 74915900 74916149 + 2 NA Intergenic Intergenic 324357 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 518-256 chr6 62391899 62392341 + 2 NA Intergenic Intergenic -105893 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 375-163 chr17 34003858 34004062 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 152846 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 191-89 chr19 33451968 33452113 + 2 NA intron (NM_001166056, intron 7 of 12) intron (NM_001166056, intron 7 of 12) 69751 NM_000285 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 356-363 chr4 62534049 62534264 + 2 NA Intergenic L2|LINE|L2 -372391 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 505-96 chr15 45952283 45952629 + 2 NA Intergenic Intergenic 247261 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 125-15 chr12 88009117 88009199 + 2 NA intron (NM_001363616, intron 3 of 11) L1ME3B|LINE|L1 20243 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 325-139 chr12 117730040 117730322 + 2 NA intron (NM_173598, intron 4 of 19) MER58A|DNA|hAT-Charlie 238809 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 265-281 chr4 115868728 115868975 + 2 NA Intergenic L1PB4|LINE|L1 -430874 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 220-98 chr13 43449517 43449670 + 2 NA intron (NR_120399, intron 1 of 3) intron (NR_120399, intron 1 of 3) 741 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 171-48 chr18 326172 326331 + 2 NA intron (NM_130386, intron 8 of 9) L1M5|LINE|L1 -58204 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 322-434 chr5 83467122 83467319 + 2 NA Intergenic Intergenic -4454 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 295-508 chrUn_KI270442v1 98806 99029 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 220-158 chr2 48796221 48796421 + 2 NA Intergenic HAL1|LINE|L1 -40597 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 657-104 chr8 137078938 137079465 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 334387 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 372-181 chr17 30362476 30362740 + 2 NA Intergenic Intergenic -16319 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 476-17 chr1 226776529 226776990 + 2 NA Intergenic AluJr|SINE|Alu -37584 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 594-87 chr21 25089780 25090274 + 2 NA Intergenic Intergenic 249477 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 372-89 chr11 112761483 112761709 + 2 NA Intergenic MIR|SINE|MIR -199824 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 403-161 chr2 104810627 104810929 + 2 NA intron (NR_037883, intron 3 of 3) L1ME3A|LINE|L1 40698 NR_131235 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 725-60 chr8 108419598 108420300 + 2 NA Intergenic AluY|SINE|Alu -23634 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 623-17 chr10 117872316 117872750 + 2 NA Intergenic Intergenic -174288 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 277-179 chr2 22428550 22428762 + 2 NA Intergenic Intergenic -107823 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 530-113 chr2 16543547 16543964 + 2 NA Intergenic Intergenic 122079 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 301-455 chr8 89281444 89281620 + 2 NA Intergenic MER4D|LTR|ERV1 476179 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 654-65 chr2 48676817 48677309 + 2 NA intron (NM_001198593, intron 10 of 10) L1MC4a|LINE|L1 59207 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 379-343 chr8 91379553 91379806 + 2 NA intron (NM_134266, intron 15 of 18) L1ME3B|LINE|L1 130360 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 234-340 chr6 53399686 53399914 + 2 NA Intergenic L1ME2z|LINE|L1 -50621 NM_001242831 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 295-111 chr13 22726512 22726802 + 2 NA Intergenic Intergenic 171524 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 312-542 chr9 27488788 27489027 + 2 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -35407 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 296-208 chr2 6016585 6016824 + 2 NA Intergenic L1MB7|LINE|L1 34726 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 309-236 chr2 20748123 20748360 + 2 NA intron (NM_021925, intron 4 of 6) intron (NM_021925, intron 4 of 6) 74860 NM_001282720 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 1014-12 chr2 66399898 66400669 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 16977 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 216-347 chr9 6158977 6159123 + 2 NA Intergenic Intergenic -56099 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 648-18 chr10 108550519 108550979 + 2 NA Intergenic Intergenic -481456 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 155-64 chr3 6221671 6221788 + 2 NA Intergenic Intergenic 583720 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 202-130 chr2 150352977 150353141 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -96052 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 145-48 chr2 39096157 39096278 + 2 NA intron (NM_005633, intron 1 of 22) intron (NM_005633, intron 1 of 22) 24246 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 470-192 chr4 32848782 32849029 + 2 NA Intergenic L1M1|LINE|L1 497867 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 393-205 chr21 29214334 29214659 + 2 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 21002 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 350-515 chr8 86828006 86828296 + 2 NA Intergenic Intergenic -38264 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 375-324 chr5 68612387 68612580 + 2 NA Intergenic L1MA4A|LINE|L1 319906 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 359-247 chr2 134084248 134084572 + 2 NA Intergenic Intergenic -35525 NM_001371457 339-266 chr2 84512895 84513073 + 2 NA Intergenic L1M4|LINE|L1 -3471 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 678-72 chr3 143339985 143340482 + 2 NA intron (NM_173653, intron 14 of 15) intron (NM_173653, intron 14 of 15) -2013 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 200-8 chr1 92020920 92021074 + 2 NA Intergenic Intergenic -8988 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 287-446 chrX 38969537 38969747 + 2 NA Intergenic Intergenic -165759 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 562-164 chr5 6463629 6464162 + 2 NA intron (NM_001145161, intron 1 of 1) AluY|SINE|Alu 15036 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 382-181 chr2 38063648 38063997 + 2 NA intron (NM_144713, intron 10 of 10) L1M5|LINE|L1 12359 NM_000104 1545 Hs.154654 NM_000104 ENSG00000138061 CYP1B1 ASGD6|CP1B|CYPIB1|GLC3A|P4501B1 cytochrome P450 family 1 subfamily B member 1 protein-coding 309-368 chr3 162443386 162443579 + 2 NA Intergenic Intergenic 859819 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 364-96 chr11 112197624 112197810 + 2 NA intron (NM_031938, intron 5 of 11) L2a|LINE|L2 21351 NM_001037290 83875 Hs.728325 NM_031938 ENSG00000197580 BCO2 B-DIOX-II|BCDO2 beta-carotene oxygenase 2 protein-coding 411-158 chr2 225915512 225915794 + 2 NA Intergenic L1M3f|LINE|L1 -227141 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 435-192 chr5 52628425 52628793 + 2 NA Intergenic MER75|DNA|PiggyBac -159307 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 160-18 chr11 99080242 99080328 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 59336 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 549-194 chr7 62580366 62580807 + 2 NA Intergenic ALR/Alpha|Satellite|centr 723470 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 685-18 chr12 42730057 42730701 + 2 NA Intergenic Intergenic 38163 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 287-335 chr5 161749618 161749806 + 2 NA Intergenic L1MCa|LINE|L1 63991 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 521-236 chr7 61902576 61903079 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1401229 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 382-140 chr17 21538581 21538850 + 2 NA intron (NR_160801, intron 1 of 1) L1MD3|LINE|L1 12963 NR_160801 339263 Hs.514016 NM_001113434 ENSG00000212719 LINC02693 C17orf51 long intergenic non-protein coding RNA 2693 ncRNA 522-4 chr1 80195687 80196124 + 2 NA Intergenic Intergenic -339850 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 541-164 chr3 194830161 194830568 + 2 NA Intergenic Intergenic -61655 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 270-302 chr5 68092996 68093227 + 2 NA Intergenic Intergenic -96765 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 619-115 chr6 162985475 162985900 + 2 NA intron (NM_001080379, intron 2 of 4) L1PB1|LINE|L1 68474 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 323-434 chr5 145501680 145501897 + 2 NA Intergenic Intergenic 333554 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 398-229 chr4 10891886 10892240 + 2 NA Intergenic Intergenic -207295 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 337-186 chr15 97492555 97492853 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 29107 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 362-29 chr1 174982777 174983023 + 2 NA non-coding (NR_158982, exon 25 of 27) non-coding (NR_158982, exon 25 of 27) -16535 NM_001007214 27101 Hs.508524 NM_014412 ENSG00000116161 CACYBP GIG5|PNAS-107|S100A6BP|SIP calcyclin binding protein protein-coding 312-329 chr3 59644678 59644900 + 2 NA intron (NR_149028, intron 1 of 3) intron (NR_149028, intron 1 of 3) 13708 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 202-214 chr5 120403284 120403455 + 2 NA Intergenic L1MB8|LINE|L1 -60909 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 247-342 chr5 147076552 147076762 + 2 NA intron (NM_181677, intron 2 of 10) L2c|LINE|L2 4813 NM_181678 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 232-73 chr12 24570281 24570431 + 2 NA intron (NR_029451, intron 2 of 3) L4_A_Mam|LINE|RTE-X -7865 NM_001261414 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 585-88 chr20 46833645 46834083 + 2 NA Intergenic Intergenic -60760 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 311-492 chr8 36267051 36267236 + 2 NA Intergenic LTR1F1|LTR|ERV1 -517231 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 222-12 chr1 158792852 158793014 + 2 NA Intergenic L1PBb|LINE|L1 -15298 NM_001005278 81442 Hs.554487 NM_001005278 ENSG00000188340 OR6N2 OR1-23 olfactory receptor family 6 subfamily N member 2 protein-coding 346-477 chr8 11210997 11211298 + 2 NA Intergenic Intergenic -9314 NM_173683 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 403-18 chr1 182737064 182737303 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 24321 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 155-44 chr16 54669684 54669798 + 2 NA Intergenic L2a|LINE|L2 178492 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 415-78 chr14 95268459 95268761 + 2 NA intron (NM_024734, intron 1 of 12) L1MD2|LINE|L1 51298 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 297-277 chr22 26080941 26081205 + 2 NA Intergenic MIR|SINE|MIR -88389 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 249-110 chr14 39024391 39024593 + 2 NA Intergenic Intergenic -78648 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 160-20 chr12 7057054 7057141 + 2 NA Intergenic AluJr|SINE|Alu -3621 NM_001734 716 Hs.458355 NM_001734 ENSG00000182326 C1S EDSPD2 complement C1s protein-coding 382-264 chr3 63691357 63691618 + 2 NA Intergenic L1MEf|LINE|L1 38812 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 453-70 chr14 66506827 66507178 + 2 NA promoter-TSS (NM_020806) promoter-TSS (NM_020806) -405 NM_001024218 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 497-3 chr1 75776971 75777363 + 2 NA Intergenic FLAM_C|SINE|Alu -9027 NR_073562 5876 Hs.78948 NM_004582 ENSG00000137955 RABGGTB GGTB Rab geranylgeranyltransferase subunit beta protein-coding 230-152 chr18 4381280 4381492 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 73880 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 216-54 chr11 23340490 23340690 + 2 NA Intergenic Intergenic 78600 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 341-459 chr6 39032327 39032578 + 2 NA Intergenic Intergenic -16329 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 332-370 chr4 36633457 36633698 + 2 NA intron (NR_149124, intron 1 of 4) L1MA9|LINE|L1 8323 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 170-5 chr1 75937647 75937773 + 2 NA Intergenic L1MB1|LINE|L1 -5306 NM_080868 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 396-162 chr2 56383816 56384148 + 2 NA intron (NM_001348513, intron 5 of 5) MER5B|DNA|hAT-Charlie -198212 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 200-36 chr10 101363600 101363753 + 2 NA intron (NM_003939, intron 1 of 13) intron (NM_003939, intron 1 of 13) 9511 NM_003939 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 331-343 chr3 38327606 38327860 + 2 NA Intergenic LTR8B|LTR|ERV1 -19027 NM_001349179 9942 Hs.659985 NM_005108 ENSG00000093217 XYLB - xylulokinase protein-coding 601-160 chrX 58333730 58334216 + 2 NA Intergenic ALR/Alpha|Satellite|centr -423340 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 643-127 chr8 80593697 80594172 + 2 NA Intergenic Intergenic 107708 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 388-218 chr3 13287173 13287379 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 133046 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 377-407 chr8 107379257 107379581 + 2 NA intron (NM_001199859, intron 1 of 8) MIR|SINE|MIR -42904 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 508-82 chr17 79076821 79077171 + 2 NA intron (NM_001042573, intron 1 of 13) AluSx|SINE|Alu 2059 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 328-396 chr4 43262391 43262588 + 2 NA Intergenic L1MA3|LINE|L1 230054 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 378-278 chr3 38469650 38470000 + 2 NA intron (NM_001106, intron 1 of 10) L1MEd|LINE|L1 -15005 NR_028389 100128640 Hs.570596 NR_028389 ENSG00000229589 ACVR2B-AS1 - ACVR2B antisense RNA 1 ncRNA 330-541 chr8 138396612 138396838 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 100536 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 598-46 chr15 24681883 24682391 + 2 NA 3' UTR (NM_018958, exon 1 of 1) 3' UTR (NM_018958, exon 1 of 1) 6743 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 516-147 chr20 4093596 4093943 + 2 NA Intergenic MER33|DNA|hAT-Charlie -55010 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 357-59 chr11 26330836 26331100 + 2 NA intron (NM_001313726, intron 2 of 27) intron (NM_001313726, intron 2 of 27) -1162 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 841-2 chr1 84069629 84070131 + 2 NA Intergenic MER4B-int|LTR|ERV1 -8095 NM_002731 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 282-48 chr10 71038095 71038346 + 2 NA Intergenic MIR3|SINE|MIR 99167 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 439-166 chr20 55562197 55562600 + 2 NA Intergenic L1PA16|LINE|L1 -135201 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 424-146 chr2 189398851 189399208 + 2 NA Intergenic L1MEg|LINE|L1 -42404 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 209-75 chr12 90358209 90358354 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 64963 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 493-11 chr1 81726762 81727165 + 2 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 27193 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 452-47 chr11 90889213 90889631 + 2 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -20220 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 490-242 chr6 71528240 71528552 + 2 NA Intergenic Intergenic 107369 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 389-27 chr10 30290079 30290306 + 2 NA Intergenic HAL1|LINE|L1 59146 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 285-171 chr18 71510290 71510454 + 2 NA Intergenic AluSq2|SINE|Alu 68584 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 482-273 chr8 110101290 110101694 + 2 NA Intergenic Intergenic -125721 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 276-250 chr2 214911515 214911702 + 2 NA intron (NR_110292, intron 2 of 3) intron (NR_110292, intron 2 of 3) 64661 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 305-530 chr8 59989457 59989731 + 2 NA Intergenic L1MA8|LINE|L1 291806 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 285-183 chr2 1077817 1078037 + 2 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -126535 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 311-252 chr2 56726752 56726997 + 2 NA Intergenic L1PA15|LINE|L1 -541104 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 243-320 chr4 43009408 43009575 + 2 NA intron (NM_001080476, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 116225 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 199-68 chr16 6948779 6948936 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 175048 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 474-39 chr10 116674027 116674406 + 2 NA 3' UTR (NM_025015, exon 12 of 12) 3' UTR (NM_025015, exon 12 of 12) -3934 NM_001350930 143379 Hs.121347 NM_144661 ENSG00000165863 C10orf82 - chromosome 10 open reading frame 82 protein-coding 278-234 chr2 169976592 169976741 + 2 NA intron (NM_172070, intron 24 of 38) L1MA4|LINE|L1 149158 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 429-139 chr2 17923909 17924308 + 2 NA intron (NM_002252, intron 2 of 2) L1MB8|LINE|L1 45441 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 223-54 chr11 91409903 91410060 + 2 NA Intergenic L1MEf|LINE|L1 -540779 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 210-232 chr5 122387700 122387850 + 2 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) -3314 NM_001308108 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 442-269 chr7 7308955 7309358 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 54002 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 275-294 chr5 94156290 94156454 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -44673 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 254-296 chr5 13789553 13789751 + 2 NA intron (NM_001369, intron 50 of 78) intron (NM_001369, intron 50 of 78) 154828 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 266-98 chr13 33740746 33741008 + 2 NA Intergenic Intergenic -64083 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 138-76 chr6 128997434 128997538 + 2 NA intron (NM_000426, intron 1 of 64) L2a|LINE|L2 114345 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 372-9 chr1 51572355 51572604 + 2 NA intron (NR_161259, intron 3 of 8) MIRc|SINE|MIR 11252 NR_161259 441884 NR_161259 CALR4P - calreticulin 4, pseudogene pseudo 591-12 chr10 48618355 48618931 + 2 NA intron (NM_001347738, intron 2 of 10) L1M4|LINE|L1 -13512 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 150-70 chr3 100221283 100221406 + 2 NA Intergenic Intergenic 35520 NR_028357 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 244-109 chr15 69502613 69502740 + 2 NA Intergenic Intergenic 49858 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 262-309 chr4 60904942 60905129 + 2 NA Intergenic Intergenic -17584 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 329-622 chrX 83203181 83203466 + 2 NA Intergenic L1M4|LINE|L1 -304967 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 305-70 chr10 76639139 76639427 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -248761 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 305-111 chr12 14801619 14801794 + 2 NA intron (NM_016312, intron 1 of 11) intron (NM_016312, intron 1 of 11) 1772 NM_016312 51729 Hs.655138 NM_016312 ENSG00000084463 WBP11 NPWBP|PPP1R165|SIPP1|WBP-11 WW domain binding protein 11 protein-coding 319-22 chr1 157286262 157286505 + 2 NA Intergenic Intergenic -147792 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 220-91 chr12 80719444 80719620 + 2 NA 3' UTR (NM_005593, exon 3 of 3) 3' UTR (NM_005593, exon 3 of 3) 2620 NM_005593 4617 Hs.178023 NM_005593 ENSG00000111049 MYF5 EORVA|bHLHc2 myogenic factor 5 protein-coding 260-5 chr1 80303649 80303822 + 2 NA Intergenic Intergenic -232020 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 299-77 chr11 40402762 40403054 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -109778 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 182-99 chr2 198888702 198888864 + 2 NA Intergenic Intergenic -513686 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 382-224 chr2 157701680 157701891 + 2 NA Intergenic L1MA4A|LINE|L1 -72921 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 265-199 chr2 159089306 159089452 + 2 NA intron (NM_001350065, intron 4 of 27) intron (NM_001350065, intron 4 of 27) -97456 NR_106948 102465535 NR_106948 ENSG00000275141 MIR6888 hsa-mir-6888 microRNA 6888 ncRNA 196-251 chr8 78335569 78335698 + 2 NA Intergenic L2c|LINE|L2 -180707 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 452-180 chr4 27752492 27752772 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 535153 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 402-317 chr7 39551775 39552124 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -14455 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 223-299 chr6 39771543 39771751 + 2 NA Intergenic AluSz6|SINE|Alu -20729 NM_001201427 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 181-68 chr2 107756712 107756860 + 2 NA intron (NR_126370, intron 2 of 4) intron (NR_126370, intron 2 of 4) 2674 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 216-29 chr1 230911263 230911390 + 2 NA intron (NM_024525, intron 20 of 22) intron (NM_024525, intron 20 of 22) 36480 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 498-21 chr10 20267749 20268128 + 2 NA intron (NM_032812, intron 13 of 13) intron (NM_032812, intron 13 of 13) -284032 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 322-41 chr1 213468654 213468899 + 2 NA Intergenic Intergenic 417535 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 280-351 chr6 65636209 65636444 + 2 NA intron (NM_001292009, intron 2 of 43) L2a|LINE|L2 -56522 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 265-390 chr8 88519340 88519514 + 2 NA Intergenic Intergenic -191944 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 321-488 chr6 45230265 45230463 + 2 NA intron (NM_001350325, intron 2 of 10) L1M2|LINE|L1 -32594 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 417-312 chrX 9214928 9215225 + 2 NA Intergenic L1MB7|LINE|L1 -180949 NM_205849 171483 Hs.733351 NM_173696 ENSG00000177138 FAM9B TEX39B family with sequence similarity 9 member B protein-coding 567-77 chr19 33566851 33567293 + 2 NA Intergenic MER41A|LTR|ERV1 -45281 NM_001166056 5184 Hs.36473 NM_000285 ENSG00000124299 PEPD PROLIDASE peptidase D protein-coding 337-89 chr11 55056383 55056707 + 2 NA Intergenic ALR/Alpha|Satellite|centr -205610 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 366-195 chr2 52628197 52628526 + 2 NA Intergenic Intergenic 74254 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 687-104 chr6 105908589 105909105 + 2 NA Intergenic L1MB2|LINE|L1 -177489 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 827-51 chr7 4541199 4541830 + 2 NA Intergenic AluY|SINE|Alu -140781 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 298-412 chr6 143042398 143042629 + 2 NA Intergenic L1MC2|LINE|L1 -4931 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 171-57 chr2 116409992 116410123 + 2 NA Intergenic Intergenic 1066242 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 185-71 chr16 76848348 76848523 + 2 NA Intergenic Intergenic -20501 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 287-403 chr8 83997313 83997508 + 2 NA Intergenic AluSq2|SINE|Alu -185377 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 542-201 chr7 52366076 52366432 + 2 NA Intergenic L1M5|LINE|L1 -669379 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 206-48 chr11 57008852 57009054 + 2 NA Intergenic L1ME4b|LINE|L1 20039 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 257-50 chr10 106584431 106584606 + 2 NA intron (NM_001206569, intron 24 of 25) MER57E1|LTR|ERV1 444353 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 401-245 chr4 179671474 179671748 + 2 NA Intergenic Intergenic 1487538 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 331-424 chr5 89048363 89048579 + 2 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -144366 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 133-72 chr6 158658359 158658440 + 2 NA intron (NM_001242394, intron 2 of 17) intron (NM_001242394, intron 2 of 17) -5004 NM_001318745 94120 Hs.436977 NM_001009991 ENSG00000164674 SYTL3 SLP3 synaptotagmin like 3 protein-coding 405-26 chr10 31722613 31723014 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 186113 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 240-28 chr1 213917438 213917596 + 2 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) -7232 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 257-144 chr17 30539234 30539416 + 2 NA Intergenic Intergenic -37140 NR_015341 107133515 Hs.568209 NR_015341 SMURF2P1-LRRC37BP1 - SMURF2P1-LRRC37BP1 readthrough transcribed pseudogene pseudo 356-230 chr2 39755315 39755629 + 2 NA intron (NR_135664, intron 9 of 11) intron (NR_135664, intron 9 of 11) 23786 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 393-126 chr17 53668006 53668253 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -154798 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 284-61 chr10 132010568 132010781 + 2 NA Intergenic MER51-int|LTR|ERV1 -28661 NM_004052 664 Hs.144873 NM_004052 ENSG00000176171 BNIP3 NIP3 BCL2 interacting protein 3 protein-coding 310-568 chrX 50523886 50524191 + 2 NA Intergenic Intergenic -53213 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 492-230 chr6 92028900 92029229 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -338636 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 372-234 chr2 76965379 76965634 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -20459 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 440-43 chr12 26556117 26556547 + 2 NA exon (NM_002223, exon 36 of 57) exon (NM_002223, exon 36 of 57) 276862 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 209-100 chr14 88147927 88148129 + 2 NA Intergenic Intergenic -121716 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 319-160 chr15 70171789 70172055 + 2 NA Intergenic Intergenic -74005 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 737-73 chr5 153253405 153253973 + 2 NA Intergenic L1M2|LINE|L1 -236835 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 382-259 chr3 23559054 23559323 + 2 NA intron (NM_001370225, intron 5 of 5) intron (NM_001370225, intron 5 of 5) -246767 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 333-470 chr5 117716194 117716456 + 2 NA Intergenic L1MC2|LINE|L1 -14036 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 266-460 chrX 90036240 90036465 + 2 NA Intergenic L1PA16|LINE|L1 114444 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 216-333 chr8 77707223 77707347 + 2 NA Intergenic L1MB3|LINE|L1 256588 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 401-208 chr3 77658400 77658619 + 2 NA Intergenic LTR8A|LTR|ERV1 390454 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 270-209 chr20 43098493 43098712 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 91304 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 480-256 chr6 95985666 95986047 + 2 NA Intergenic Intergenic -30118 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 313-484 chr6 162752763 162752933 + 2 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 24878 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 337-605 chrX 121538776 121539032 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 167932 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 339-412 chr4 76811228 76811406 + 2 NA Intergenic Intergenic 86827 NM_001029870 345079 Hs.257292 NM_001029870 ENSG00000186212 SOWAHB ANKRD56 sosondowah ankyrin repeat domain family member B protein-coding 196-238 chr7 125020632 125020766 + 2 NA intron (NR_125718, intron 4 of 10) intron (NR_125718, intron 4 of 10) -90716 NM_001042594 25913 Hs.31968 NM_015450 ENSG00000128513 POT1 CMM10|GLM9|HPOT1 protection of telomeres 1 protein-coding 379-158 chr2 52851444 52851743 + 2 NA Intergenic L1PA8|LINE|L1 -148978 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 346-308 chr3 35034944 35035135 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 358984 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 344-481 chr8 43706244 43706440 + 2 NA Intergenic L1PA4|LINE|L1 413900 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 532-64 chr14 20829909 20830294 + 2 NA Intergenic Intergenic -27257 NM_198234 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 558-97 chr2 49637314 49637729 + 2 NA Intergenic Intergenic 336682 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 172-88 chr4 37532338 37532505 + 2 NA intron (NM_001104629, intron 1 of 3) MER63C|DNA|hAT-Blackjack -51812 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 345-114 chr12 21170776 21170953 + 2 NA intron (NM_006446, intron 2 of 14) intron (NM_006446, intron 2 of 14) 39670 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 186-154 chr7 66860921 66861036 + 2 NA intron (NR_135738, intron 3 of 6) intron (NR_135738, intron 3 of 6) 13528 NR_135738 101929580 Hs.571342 NR_135738 GTF2IP23 - general transcription factor IIi pseudogene 23 pseudo 209-109 chr15 61597401 61597533 + 2 NA Intergenic MIRb|SINE|MIR -132451 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 329-448 chr5 27641129 27641395 + 2 NA Intergenic Intergenic 168970 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 391-179 chr2 79356888 79357161 + 2 NA Intergenic L1MEg|LINE|L1 143820 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 298-117 chr14 60458670 60458876 + 2 NA intron (NM_174978, intron 13 of 17) intron (NM_174978, intron 13 of 17) 27290 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 391-66 chr11 105939030 105939286 + 2 NA intron (NM_000829, intron 14 of 16) intron (NM_000829, intron 14 of 16) 83082 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 278-331 chr5 33289477 33289657 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie 59832 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 287-21 chr1 150204666 150204884 + 2 NA Intergenic Intergenic 29903 NM_001136479 81611 Hs.656466 NM_030920 ENSG00000143401 ANP32E LANP-L|LANPL acidic nuclear phosphoprotein 32 family member E protein-coding 240-53 chr10 60881225 60881405 + 2 NA intron (NM_001350906, intron 9 of 12) intron (NM_001350906, intron 9 of 12) 62870 NM_001350904 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 383-52 chr11 55080375 55080601 + 2 NA Intergenic ALR/Alpha|Satellite|centr -181667 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 185-190 chr7 31868289 31868394 + 2 NA intron (NM_001191059, intron 7 of 18) L1MA4A|LINE|L1 181126 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 222-233 chr3 60662912 60663041 + 2 NA intron (NM_001320900, intron 5 of 9) L1MDb|LINE|L1 -45106 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 308-416 chr6 40107681 40107953 + 2 NA Intergenic L1MC5a|LINE|L1 -173355 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 116-31 chr3 188235489 188235572 + 2 NA intron (NM_005578, intron 2 of 10) intron (NM_005578, intron 2 of 10) 10125 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 499-65 chr13 61152038 61152477 + 2 NA Intergenic Tigger6b|DNA|TcMar-Tigger 47623 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 537-153 chr3 24809561 24809973 + 2 NA Intergenic Intergenic -19556 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 462-249 chr6 45425193 45425474 + 2 NA intron (NM_001015051, intron 3 of 7) intron (NM_001015051, intron 3 of 7) 3058 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 300-262 chr3 913492 913707 + 2 NA Intergenic MER4A1|LTR|ERV1 -179425 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 207-133 chr2 50511759 50511909 + 2 NA intron (NM_001330096, intron 7 of 16) intron (NM_001330096, intron 7 of 16) -164078 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 465-290 chr8 95967739 95968184 + 2 NA Intergenic MIR|SINE|MIR -19613 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 384-277 chr4 178542355 178542585 + 2 NA Intergenic MLT2A2|LTR|ERVL -634534 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 241-7 chr1 52622182 52622339 + 2 NA Intergenic L1ME2|LINE|L1 -10908 NR_135157 348378 Hs.424589 NM_001042693 ENSG00000182183 SHISAL2A FAM159A|PRO7171|WWLS2783 shisa like 2A protein-coding 260-329 chr4 181329173 181329325 + 2 NA Intergenic Intergenic -64220 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 252-14 chr1 112102990 112103164 + 2 NA Intergenic Intergenic 112541 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 648-93 chr3 88394834 88395385 + 2 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 56653 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 245-253 chr4 42928676 42928853 + 2 NA intron (NM_001080476, intron 1 of 3) MER74B|LTR|ERVL 35498 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 385-112 chr15 58056249 58056562 + 2 NA intron (NM_170696, intron 1 of 11) intron (NM_170696, intron 1 of 11) -8820 NR_147215 283665 Hs.638961 NR_147215 LOC283665 - uncharacterized LOC283665 ncRNA 362-242 chr2 222369038 222369342 + 2 NA Intergenic Intergenic 48529 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 233-78 chr12 52756747 52756936 + 2 NA Intergenic Intergenic 20504 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 551-139 chr4 107240810 107241305 + 2 NA Intergenic L1MEd|LINE|L1 -204744 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 306-63 chr10 90121965 90122219 + 2 NA Intergenic Intergenic -164719 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 513-223 chr5 45450053 45450548 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 246080 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 304-177 chr16 35911455 35911743 + 2 NA Intergenic L1M5|LINE|L1 165047 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 133-71 chr6 66840388 66840497 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 1052563 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 489-238 chr7 42445866 42446154 + 2 NA Intergenic L1PA15|LINE|L1 -208801 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 176-148 chr8 130837526 130837640 + 2 NA intron (NM_001115, intron 11 of 17) intron (NM_001115, intron 11 of 17) 203326 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 334-432 chr5 115187493 115187756 + 2 NA Intergenic Intergenic -7078 NM_001017398 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 327-53 chr10 66425459 66425677 + 2 NA intron (NM_001127384, intron 11 of 17) L1MEd|LINE|L1 -500468 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 230-295 chr5 44293224 44293394 + 2 NA Intergenic Intergenic -95423 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 150-69 chr3 98527386 98527527 + 2 NA Intergenic Intergenic -4390 NM_001040182 56650 Hs.531371 NM_019895 ENSG00000080822 CLDND1 C3orf4|GENX-3745|Z38 claudin domain containing 1 protein-coding 284-198 chr2 65583224 65583474 + 2 NA Intergenic Intergenic -150750 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 176-34 chr15 71000329 71000479 + 2 NA intron (NM_017691, intron 11 of 15) HAL1ME|LINE|L1 107961 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 176-84 chr3 75147893 75148052 + 2 NA Intergenic Intergenic -66504 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 824-53 chr9 85357828 85358434 + 2 NA Intergenic L1PB2|LINE|L1 383898 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 354-378 chr5 97442638 97442911 + 2 NA Intergenic L1PA12|LINE|L1 -61922 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 274-397 chr8 122170241 122170496 + 2 NA Intergenic Intergenic 398276 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 343-53 chr10 78426520 78426713 + 2 NA Intergenic L1MEc|LINE|L1 159274 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 310-261 chr2 131132309 131132559 + 2 NA intron (NM_017958, intron 5 of 7) AluJo|SINE|Alu 27587 NM_001267063 55041 Hs.469944 NM_017958 ENSG00000115762 PLEKHB2 EVT2 pleckstrin homology domain containing B2 protein-coding 364-294 chr4 11812881 11813153 + 2 NA Intergenic Intergenic 29839 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 273-78 chr11 50434326 50434486 + 2 NA Intergenic ALR/Alpha|Satellite|centr 25259 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 311-26 chr1 162477928 162478108 + 2 NA Intergenic L1MA3|LINE|L1 -19156 NM_001184763 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 499-175 chr3 169302183 169302478 + 2 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -145537 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 289-381 chr5 109643745 109643975 + 2 NA Intergenic Intergenic -45506 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 173-106 chr5 8117419 8117524 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 248323 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 149-90 chr6 106545048 106545127 + 2 NA intron (NM_001371242, intron 13 of 21) intron (NM_001371242, intron 13 of 21) 33232 NM_001624 202 Hs.724262 NM_001624 ENSG00000112297 CRYBG1 AIM1|ST4 crystallin beta-gamma domain containing 1 protein-coding 293-107 chr13 86783489 86783689 + 2 NA Intergenic Intergenic -128331 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 391-67 chr11 129309110 129309399 + 2 NA Intergenic Intergenic -26090 NR_145484 399975 NM_207431 LOC399975 - uncharacterized LOC399975 ncRNA 328-494 chr6 42924504 42924805 + 2 NA intron (NM_001243170, intron 2 of 2) intron (NM_001243170, intron 2 of 2) -3348 NR_134881 10695 Hs.414099 NM_006586 ENSG00000137161 CNPY3 CAG4A|EIEE60|ERDA5|PRAT4A|TNRC5 canopy FGF signaling regulator 3 protein-coding 243-148 chr16 7056316 7056541 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -276417 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 292-273 chr3 2917337 2917534 + 2 NA intron (NM_175607, intron 12 of 24) MER5A1|DNA|hAT-Charlie 25220 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 289-501 chrX 69782935 69783116 + 2 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 166912 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 319-91 chr11 73126594 73126866 + 2 NA intron (NM_014824, intron 2 of 19) L1ME4b|LINE|L1 15588 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 370-290 chr21 44760360 44760676 + 2 NA Intergenic Intergenic 41302 NM_001202489 7327 Hs.529420 NM_003343 ENSG00000184787 UBE2G2 UBC7 ubiquitin conjugating enzyme E2 G2 protein-coding 319-213 chr19 27726595 27726862 + 2 NA Intergenic ALR/Alpha|Satellite|centr -66703 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 256-435 chr8 130747464 130747687 + 2 NA Intergenic Intergenic 293334 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 148-44 chr2 99667494 99667614 + 2 NA intron (NM_001025108, intron 11 of 23) L1MDa|LINE|L1 -177537 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 357-350 chr5 98149974 98150244 + 2 NA intron (NR_146477, intron 3 of 4) L1MC3|LINE|L1 11130 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 314-607 chr9 80110213 80110521 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 135344 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 310-532 chr8 118198950 118199132 + 2 NA intron (NM_001101676, intron 4 of 4) L1ME4c|LINE|L1 -87222 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 353-185 chr17 33333277 33333599 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -40450 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 326-446 chr6 40744793 40745049 + 2 NA Intergenic Intergenic -157557 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 286-222 chr2 153281057 153281299 + 2 NA Intergenic L1PA16|LINE|L1 197584 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 319-375 chr4 63361935 63362176 + 2 NA Intergenic L1ME3B|LINE|L1 1047395 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 256-236 chr20 58027738 58027890 + 2 NA Intergenic Intergenic 23910 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 537-103 chr2 14742143 14742654 + 2 NA Intergenic Intergenic 109681 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 1029-3 chr12 30449574 30450239 + 2 NA Intergenic L1MEg|LINE|L1 227338 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 373-246 chr21 32086290 32086516 + 2 NA promoter-TSS (NR_038033) promoter-TSS (NR_038033) -108 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 339-375 chr3 100110414 100110639 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 3987 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 334-121 chr12 127600276 127600522 + 2 NA Intergenic Intergenic 36068 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 356-78 chr11 30638699 30638907 + 2 NA Intergenic Intergenic -52450 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 346-280 chr20 14110991 14111199 + 2 NA intron (NM_001351663, intron 3 of 17) L1MA2|LINE|L1 115579 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 406-96 chr15 50632834 50633099 + 2 NA exon (NM_001301212, exon 9 of 39) exon (NM_001301212, exon 9 of 39) 53831 NR_149154 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 266-276 chr4 34215202 34215420 + 2 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 54436 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 336-114 chr11 132599935 132600206 + 2 NA intron (NM_002545, intron 2 of 6) intron (NM_002545, intron 2 of 6) 315768 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 596-129 chr5 12299696 12300283 + 2 NA Intergenic L1MA5|LINE|L1 -274868 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 278-138 chr15 99996661 99996801 + 2 NA intron (NM_139057, intron 19 of 21) intron (NM_139057, intron 19 of 21) 189708 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 497-195 chr4 32174914 32175328 + 2 NA Intergenic L2c|LINE|L2 -152699 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 242-171 chr2 48901512 48901706 + 2 NA Intergenic Intergenic -145885 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 180-90 chr2 168356147 168356259 + 2 NA Intergenic AluJb|SINE|Alu -100069 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 379-346 chr8 99978872 99979071 + 2 NA intron (NM_015668, intron 22 of 27) X6B_LINE|LINE|CR1 -25611 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 679-56 chr2 195576505 195576917 + 2 NA Intergenic Intergenic -80247 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 169-149 chr9 72141426 72141538 + 2 NA intron (NM_001242507, intron 1 of 13) intron (NM_001242507, intron 1 of 13) -7869 NM_001242505 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 230-144 chr16 85536612 85536780 + 2 NA Intergenic Intergenic -74713 NM_001134473 23199 Hs.461647 NM_014615 ENSG00000131149 GSE1 CRHSP24|KIAA0182 Gse1 coiled-coil protein protein-coding 277-209 chr2 141108559 141108737 + 2 NA intron (NM_018557, intron 7 of 90) AluSq2|SINE|Alu -521963 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 290-53 chr10 68725806 68726003 + 2 NA intron (NR_104262, intron 2 of 23) AluJb|SINE|Alu 4665 NR_104262 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 349-363 chr4 29296167 29296405 + 2 NA Intergenic MIRb|SINE|MIR 81994 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 305-63 chr10 59218555 59218753 + 2 NA intron (NM_001143774, intron 1 of 4) intron (NM_001143774, intron 1 of 4) 41187 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 481-245 chr5 32966907 32967191 + 2 NA Intergenic Intergenic 19606 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 435-92 chr16 46386337 46386741 + 2 NA Intergenic Intergenic 182558 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 615-23 chr11 116308292 116308774 + 2 NA Intergenic MIRc|SINE|MIR -330889 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 299-306 chr4 100715 100880 + 2 NA Intergenic MER61-int|LTR|ERV1 -23679 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 357-119 chr14 72482909 72483127 + 2 NA intron (NM_001370294, intron 12 of 14) Tigger15a|DNA|TcMar-Tigger -33802 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 617-85 chr3 71782265 71782856 + 2 NA intron (NM_021935, intron 1 of 2) intron (NM_021935, intron 1 of 2) 2588 NM_001126128 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 289-231 chr2 82559098 82559330 + 2 NA Intergenic L3|LINE|CR1 -297589 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 336-438 chr4 177028149 177028368 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 152556 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 548-173 chr4 181450041 181450454 + 2 NA Intergenic Intergenic -185218 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 418-148 chr3 13902323 13902575 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -22378 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 222-239 chr3 84348948 84349121 + 2 NA Intergenic L1PA14|LINE|L1 520541 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 596-159 chr8 18151742 18152186 + 2 NA Intergenic L1MA4|LINE|L1 -18503 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 294-336 chr4 64124381 64124652 + 2 NA Intergenic Intergenic 284934 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 379-335 chr8 52976597 52976870 + 2 NA Intergenic Intergenic 36825 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 235-266 chr4 106950784 106950960 + 2 NA intron (NM_014421, intron 1 of 3) L1ME3A|LINE|L1 85441 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 328-321 chr20 56946818 56947024 + 2 NA Intergenic L2a|LINE|L2 -266775 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 426-166 chr21 19023391 19023755 + 2 NA Intergenic L1MC|LINE|L1 -263761 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 201-41 chr11 24532871 24533020 + 2 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 35892 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 535-81 chr14 87826623 87827011 + 2 NA Intergenic HAL1ME|LINE|L1 166365 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 198-180 chr4 64030962 64031144 + 2 NA Intergenic L1M1|LINE|L1 378397 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 287-277 chr4 39052915 39053174 + 2 NA intron (NM_001171654, intron 1 of 10) intron (NM_001171654, intron 1 of 10) 8213 NM_001171654 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 365-73 chr11 77416120 77416465 + 2 NA intron (NM_001128620, intron 1 of 15) Tigger3b|DNA|TcMar-Tigger 57771 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 150-94 chr6 54314528 54314652 + 2 NA intron (NM_014464, intron 1 of 10) MLT1J|LTR|ERVL-MaLR 6149 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 276-56 chr10 56662665 56662832 + 2 NA Intergenic Intergenic -301475 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 171-62 chr2 190544241 190544388 + 2 NA Intergenic Intergenic -9592 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 824-54 chr9 96752736 96753422 + 2 NA Intergenic L1MB5|LINE|L1 25008 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 156-77 chr4 160751943 160752077 + 2 NA Intergenic AluJr|SINE|Alu -974226 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 124-64 chr5 133469865 133469971 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -42212 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 269-415 chr8 139317601 139317823 + 2 NA Intergenic MER102b|DNA|hAT-Charlie 385411 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 705-18 chr11 115953224 115953770 + 2 NA Intergenic Intergenic -193297 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 562-134 chr3 7152172 7152724 + 2 NA intron (NM_000844, intron 2 of 9) L2c|LINE|L2 -258431 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 135-49 chr3 115988804 115988879 + 2 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -83715 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 118-52 chr7 2799542 2799625 + 2 NA intron (NM_001293092, intron 1 of 2) L1MD1|LINE|L1 15647 NM_001282441 2768 Hs.487341 NM_007353 ENSG00000146535 GNA12 NNX3|RMP|gep G protein subunit alpha 12 protein-coding 490-223 chr5 108076018 108076422 + 2 NA intron (NM_001163315, intron 6 of 8) LTR49-int|LTR|ERV1 305878 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 237-296 chr5 57468701 57468888 + 2 NA Intergenic Intergenic 14017 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 324-151 chr14 32267022 32267201 + 2 NA Intergenic L1ME4a|LINE|L1 -62187 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 344-255 chr2 158956840 158957014 + 2 NA Intergenic FAM|SINE|Alu -11707 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 129-54 chr3 20888307 20888416 + 2 NA Intergenic Intergenic -517365 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 249-167 chr18 67391033 67391200 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 -125430 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 303-394 chr6 45585448 45585723 + 2 NA Intergenic Intergenic 163310 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 171-127 chr7 85487788 85487941 + 2 NA intron (NR_134240, intron 3 of 3) L1MA9|LINE|L1 66742 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 424-86 chr16 1004416 1004831 + 2 NA Intergenic AluJo|SINE|Alu 22853 NM_014587 30812 Hs.243678 NM_014587 ENSG00000005513 SOX8 - SRY-box transcription factor 8 protein-coding 317-70 chr10 117934477 117934685 + 2 NA Intergenic AluSx|SINE|Alu -112240 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 281-115 chr14 56937503 56937776 + 2 NA Intergenic MIRb|SINE|MIR 124481 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 380-109 chr13 76020480 76020822 + 2 NA Intergenic Intergenic -85519 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 516-259 chr8 127950065 127950355 + 2 NA intron (NR_003367, intron 3 of 8) intron (NR_003367, intron 3 of 8) -1487 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 346-297 chr3 972182 972359 + 2 NA Intergenic LOR1b|LTR|ERV1 -120754 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 376-338 chr5 178708128 178708369 + 2 NA Intergenic Intergenic 22411 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 319-267 chr2 154272213 154272378 + 2 NA intron (NM_052917, intron 8 of 12) intron (NM_052917, intron 8 of 12) 185143 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 368-69 chr10 131438569 131438818 + 2 NA Intergenic Intergenic -126972 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 300-439 chr7 110777371 110777562 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -313540 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 595-18 chr10 69601646 69602119 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -28365 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 313-473 chr6 99663133 99663432 + 2 NA Intergenic Intergenic 56508 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 232-268 chr4 67799923 67800088 + 2 NA Intergenic Intergenic -43919 NM_000406 2798 Hs.407587 NM_000406 ENSG00000109163 GNRHR GNRHR1|GRHR|HH7|LHRHR|LRHR gonadotropin releasing hormone receptor protein-coding 355-111 chr11 112920224 112920433 + 2 NA Intergenic Intergenic -41092 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 434-182 chr3 60615522 60615764 + 2 NA intron (NM_001320900, intron 5 of 9) L2b|LINE|L2 2227 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 329-146 chr13 109638991 109639183 + 2 NA Intergenic Intergenic -89187 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 295-213 chr2 69130553 69130820 + 2 NA intron (NM_032208, intron 12 of 17) intron (NM_032208, intron 12 of 17) 27004 NR_036073 100423030 NR_036073 ENSG00000266649 MIR3126 mir-3126 microRNA 3126 ncRNA 196-133 chr2 125202453 125202632 + 2 NA Intergenic L1ME3C|LINE|L1 915443 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 556-160 chr4 91721316 91721777 + 2 NA Intergenic (TATAATT)n|Simple_repeat|Simple_repeat 555756 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 351-312 chr3 119114830 119115153 + 2 NA intron (NM_152538, intron 1 of 8) MSTA|LTR|ERVL-MaLR 31029 NM_152538 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 713-53 chr3 26781692 26782194 + 2 NA Intergenic L1MA1|LINE|L1 87386 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 132-3 chr1 175705771 175705884 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 37768 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 192-194 chr7 66615932 66616104 + 2 NA Intergenic AluJb|SINE|Alu -12863 NM_001167961 154881 Hs.546627 NM_153033 ENSG00000243335 KCTD7 CLN14|EPM3 potassium channel tetramerization domain containing 7 protein-coding 226-281 chr5 63036338 63036523 + 2 NA Intergenic L1MEd|LINE|L1 457611 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 557-151 chr5 11586347 11586775 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) 2356 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 366-71 chr11 12622481 12622747 + 2 NA Intergenic L1MB7|LINE|L1 -51807 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 232-92 chr14 25710150 25710309 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -659932 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 265-217 chr20 54836213 54836457 + 2 NA Intergenic Helitron3Na_Mam|RC|Helitron 360742 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 372-6 chr1 32970659 32970942 + 2 NA Intergenic Intergenic -5991 NM_001127361 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 867-38 chr5 53854804 53855451 + 2 NA Intergenic L1MC|LINE|L1 -35445 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 326-150 chr14 59675222 59675435 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -28308 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 352-56 chr10 94981374 94981619 + 2 NA intron (NM_000771, intron 7 of 8) intron (NM_000771, intron 7 of 8) 42838 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 274-349 chr7 41063946 41064141 + 2 NA Intergenic L1M5|LINE|L1 -37561 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 387-293 chr5 116173133 116173376 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) -82489 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 381-146 chr18 4990730 4990966 + 2 NA Intergenic MER52-int|LTR|ERV1 -90334 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 188-53 chr14 55292643 55292769 + 2 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 20552 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 362-196 chr18 7706911 7707109 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 139694 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 378-144 chr14 79057900 79058089 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -141988 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 370-110 chr12 29613537 29613783 + 2 NA intron (NM_001367875, intron 8 of 19) intron (NM_001367875, intron 8 of 19) -113967 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 497-75 chr14 62625348 62625736 + 2 NA Intergenic L2|LINE|L2 419916 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 259-264 chr3 170207505 170207697 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -14823 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 305-149 chr14 49234034 49234207 + 2 NA Intergenic L1PA16|LINE|L1 352260 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 386-327 chr7 40656775 40657136 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 322984 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 362-60 chr10 51120913 51121248 + 2 NA intron (NM_006258, intron 1 of 17) MLT1D|LTR|ERVL-MaLR 46593 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 336-142 chr12 126460550 126460770 + 2 NA intron (NR_130748, intron 5 of 11) (TAGA)n|Simple_repeat|Simple_repeat -11333 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 304-564 chrX 42185122 42185377 + 2 NA Intergenic Intergenic -261695 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 192-212 chr8 125720464 125720631 + 2 NA Intergenic LTR82A|LTR|ERVL 230650 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 483-95 chr18 9209983 9210251 + 2 NA intron (NM_001204056, intron 4 of 11) intron (NM_001204056, intron 4 of 11) 72554 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 469-19 chr1 176475836 176476219 + 2 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 12852 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 505-88 chr14 72395053 72395387 + 2 NA intron (NM_001370288, intron 3 of 16) HAL1b|LINE|L1 -121600 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 519-12 chr1 119077379 119077713 + 2 NA intron (NM_015836, intron 1 of 5) intron (NM_015836, intron 1 of 5) 30141 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 269-28 chr1 208557437 208557655 + 2 NA Intergenic Intergenic -171142 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 244-112 chr15 94653833 94654015 + 2 NA Intergenic Intergenic -201439 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 402-331 chr8 3550028 3550270 + 2 NA intron (NM_033225, intron 10 of 69) L2|LINE|L2 -821698 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 260-336 chr5 11008140 11008320 + 2 NA intron (NM_001288715, intron 17 of 20) MLT1D|LTR|ERVL-MaLR -246996 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 233-234 chr3 74406568 74406723 + 2 NA intron (NM_020872, intron 4 of 21) intron (NM_020872, intron 4 of 21) 114495 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 505-9 chr1 90737369 90737754 + 2 NA Intergenic Intergenic -20259 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 829-25 chr3 58199956 58200664 + 2 NA intron (NM_004944, intron 5 of 7) MLT1K|LTR|ERVL-MaLR 10662 NM_004944 1776 Hs.476453 NM_004944 ENSG00000163687 DNASE1L3 DHP2|DNAS1L3|LSD|SLEB16 deoxyribonuclease 1 like 3 protein-coding 316-168 chr14 52598290 52598515 + 2 NA intron (NM_001353361, intron 2 of 7) intron (NM_001353361, intron 2 of 7) 45566 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 530-144 chr2 194024340 194024828 + 2 NA Intergenic L1MEg|LINE|L1 -319685 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 761-27 chr2 152903238 152903709 + 2 NA Intergenic Intergenic 184836 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 386-2 chr1 14545301 14545499 + 2 NA Intergenic MIR|SINE|MIR -53285 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 288-111 chr14 33388850 33389113 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -319956 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 383-86 chr12 83364246 83364502 + 2 NA Intergenic Intergenic 677219 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 344-447 chr7 4456017 4456273 + 2 NA Intergenic Intergenic -226150 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 358-427 chr7 16403013 16403221 + 2 NA intron (NM_001101426, intron 2 of 9) L1MEd|LINE|L1 18421 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 326-212 chr18 55841438 55841698 + 2 NA Intergenic L1ME1|LINE|L1 -59843 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 266-323 chr5 38657988 38658211 + 2 NA intron (NR_103554, intron 8 of 8) intron (NR_103554, intron 8 of 8) 62174 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 239-202 chr2 202438382 202438576 + 2 NA intron (NM_001204, intron 1 of 12) L1MB7|LINE|L1 62152 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 416-296 chr6 115589121 115589386 + 2 NA Intergenic MLT2A2|LTR|ERVL 54582 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 462-113 chr18 10185877 10186243 + 2 NA Intergenic MER57A-int|LTR|ERV1 228310 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 510-225 chr5 36056759 36057196 + 2 NA intron (NM_001168316, intron 1 of 5) MLT1D-int|LTR|ERVL-MaLR 9905 NM_174914 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 450-195 chr3 70951260 70951699 + 2 NA Intergenic Intergenic 113445 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 254-178 chr2 21991012 21991180 + 2 NA Intergenic L2a|LINE|L2 -280444 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 356-364 chr4 73989469 73989745 + 2 NA Intergenic Intergenic -1417 NM_002704 5473 Hs.2164 NM_002704 ENSG00000163736 PPBP B-TG1|Beta-TG|CTAP-III|CTAP3|CTAPIII|CXCL7|LA-PF4|LDGF|MDGF|NAP-2|PBP|SCYB7|TC1|TC2|TGB|TGB1|THBGB|THBGB1 pro-platelet basic protein protein-coding 364-212 chr2 95220841 95221052 + 2 NA Intergenic Intergenic -53503 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 399-67 chr12 1279327 1279566 + 2 NA intron (NR_027948, intron 14 of 19) intron (NR_027948, intron 14 of 19) -221045 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 228-29 chr10 14263748 14263937 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 67042 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 221-171 chr22 35061935 35062045 + 2 NA Intergenic MER57F|LTR|ERV1 -4168 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 263-288 chr4 60451330 60451518 + 2 NA Intergenic LTR81B|LTR|Gypsy -471195 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 444-143 chr20 47941200 47941541 + 2 NA Intergenic MIR|SINE|MIR -41856 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 198-13 chr1 187052314 187052473 + 2 NA Intergenic Intergenic -40449 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 384-358 chr7 130485169 130485374 + 2 NA promoter-TSS (NM_001253901) promoter-TSS (NM_001253901) -904 NM_177524 4232 Hs.270978 NM_002402 ENSG00000106484 MEST PEG1 mesoderm specific transcript protein-coding 338-390 chr4 112830360 112830556 + 2 NA intron (NM_001354275, intron 1 of 43) L1PA15|LINE|L1 12461 NM_001354239 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 398-116 chr15 26611329 26611661 + 2 NA intron (NM_001191320, intron 2 of 6) LOR1-int|LTR|ERV1 17595 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 557-110 chr2 134800072 134800446 + 2 NA Intergenic MIRb|SINE|MIR -38357 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 317-244 chr2 118274826 118275079 + 2 NA Intergenic Intergenic -88566 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 388-364 chr9 27747811 27748076 + 2 NA Intergenic Intergenic -174077 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 967-26 chr7 150729246 150730006 + 2 NA intron (NM_001199577, intron 3 of 5) MLT1E1|LTR|ERVL-MaLR -7722 NM_018384 55340 Hs.647079 NM_018384 ENSG00000196329 GIMAP5 HIMAP3|IAN-5|IAN4|IAN4L1|IAN5|IMAP3|IROD GTPase, IMAP family member 5 protein-coding 354-402 chr6 88809140 88809440 + 2 NA intron (NM_003800, intron 11 of 15) L1MCc|LINE|L1 154328 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 272-32 chr1 247040374 247040568 + 2 NA intron (NM_033213, intron 1 of 3) L1M4|LINE|L1 -32414 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 199-117 chr2 78791582 78791739 + 2 NA Intergenic (ATTTAGA)n|Simple_repeat|Simple_repeat -234042 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 761-28 chr2 154084755 154085176 + 2 NA intron (NM_052917, intron 3 of 12) intron (NM_052917, intron 3 of 12) 140571 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 298-90 chr12 15593998 15594164 + 2 NA intron (NM_030671, intron 13 of 13) intron (NM_030671, intron 13 of 13) 47470 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 206-276 chr8 137421737 137421932 + 2 NA Intergenic L1MEf|LINE|L1 -8246 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 527-273 chr8 131609049 131609450 + 2 NA Intergenic Intergenic -294844 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 322-414 chr5 16809545 16809740 + 2 NA intron (NM_012334, intron 3 of 40) intron (NM_012334, intron 3 of 40) 126646 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 339-317 chr20 37538857 37539035 + 2 NA Intergenic L1MC4|LINE|L1 -11015 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 822-43 chr4 61689420 61690054 + 2 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 472028 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 283-134 chr14 68218341 68218567 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 394862 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 773-47 chr8 75991699 75992276 + 2 NA Intergenic LTR49-int|LTR|ERV1 -414667 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 212-320 chr8 53174717 53174847 + 2 NA Intergenic LTR51|LTR|ERV1 76855 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 273-409 chr7 5738890 5739149 + 2 NA intron (NM_207111, intron 5 of 16) L1MB3|LINE|L1 -27109 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 319-437 chr5 169483617 169483864 + 2 NA Intergenic L1ME1|LINE|L1 -100033 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 480-163 chr2 183026716 183027091 + 2 NA intron (NM_205842, intron 1 of 31) (TAA)n|Simple_repeat|Simple_repeat 11554 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 395-150 chr19 12629360 12629626 + 2 NA 3' UTR (NM_153358, exon 4 of 4) 3' UTR (NM_153358, exon 4 of 4) 18573 NM_153358 163049 Hs.720677 NM_153358 ENSG00000173875 ZNF791 - zinc finger protein 791 protein-coding 266-94 chr12 95327496 95327729 + 2 NA Intergenic Intergenic 17689 NR_037456 100500802 NR_037456 ENSG00000265917 MIR3685 - microRNA 3685 ncRNA 385-77 chr12 128908991 128909274 + 2 NA intron (NM_001366889, intron 5 of 12) intron (NM_001366889, intron 5 of 12) 55654 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 229-60 chr11 29572510 29572702 + 2 NA Intergenic Intergenic -21807 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 167 chr1 22365055 22365188 + 2 NA Intergenic MIR|SINE|MIR -86730 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 294-404 chr6 54442717 54442965 + 2 NA Intergenic L1MA1|LINE|L1 134400 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 206-82 chr15 93549314 93549491 + 2 NA Intergenic L1M5|LINE|L1 -307158 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 243-67 chr11 35263748 35263933 + 2 NA intron (NM_001252652, intron 11 of 11) L2a|LINE|L2 100890 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 220-194 chr2 231090174 231090387 + 2 NA intron (NM_001191037, intron 16 of 23) AluSx1|SINE|Alu 33413 NM_002807 5707 Hs.3887 NM_002807 ENSG00000173692 PSMD1 P112|Rpn2|S1 proteasome 26S subunit, non-ATPase 1 protein-coding 400-287 chr5 84976854 84977232 + 2 NA Intergenic L1PA4|LINE|L1 -592163 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 210-39 chr10 114293142 114293308 + 2 NA 3' UTR (NM_001320804, exon 14 of 14) 3' UTR (NM_001320804, exon 14 of 14) 53611 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 373-366 chr6 120669909 120670157 + 2 NA Intergenic Intergenic 654854 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 407-148 chr2 133648788 133649113 + 2 NA Intergenic L1MB1|LINE|L1 -80487 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 300-462 chr8 79629360 79629536 + 2 NA intron (NM_007029, intron 1 of 4) intron (NM_007029, intron 1 of 4) 18331 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 234-29 chr10 20707002 20707175 + 2 NA Intergenic Intergenic 155118 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 337-321 chr21 18822742 18822918 + 2 NA Intergenic Intergenic -63018 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 480-92 chr15 52087153 52087528 + 2 NA Intergenic Intergenic 25435 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 163-78 chr3 24615137 24615218 + 2 NA Intergenic Intergenic -119469 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 284-3 chr1 58957435 58957682 + 2 NA Intergenic Intergenic -62918 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 145-31 chr15 25030221 25030302 + 2 NA intron (NR_146177, intron 23 of 147) intron (NR_146177, intron 23 of 147) -1612 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 282-305 chr3 109635876 109636048 + 2 NA Intergenic Intergenic 33134 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 196-51 chr11 112989804 112989915 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -26399 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 239-410 chr8 93178962 93179102 + 2 NA Intergenic L2a|LINE|L2 -12182 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 146-57 chr3 97469085 97469220 + 2 NA intron (NM_173655, intron 5 of 12) Tigger15a|DNA|TcMar-Tigger 29545 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 263-88 chr12 99596107 99596305 + 2 NA intron (NM_152788, intron 9 of 25) MLT1C|LTR|ERVL-MaLR -51547 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 204-27 chr10 73072289 73072435 + 2 NA intron (NM_001017962, intron 3 of 14) intron (NM_001017962, intron 3 of 14) 24612 NM_001017962 5033 Hs.500047 NM_000917 ENSG00000122884 P4HA1 P4HA prolyl 4-hydroxylase subunit alpha 1 protein-coding 272-69 chr11 19787928 19788114 + 2 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -27938 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 190-198 chr9 92944474 92944653 + 2 NA Intergenic AluY|SINE|Alu -2960 NM_001083536 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 280-309 chr5 12922870 12923116 + 2 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 109893 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 641-23 chr11 129336576 129337091 + 2 NA Intergenic MER21C|LTR|ERVL -39015 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 271-407 chr7 67970406 67970619 + 2 NA Intergenic ERVL-int|LTR|ERVL -49741 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 176-37 chr16 54657952 54658065 + 2 NA Intergenic MIR|SINE|MIR 190225 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 346-402 chr5 123576647 123576987 + 2 NA intron (NM_001044723, intron 5 of 12) L1MC4a|LINE|L1 31400 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 403-139 chr18 38217516 38217845 + 2 NA Intergenic L1ME1|LINE|L1 560545 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 364-335 chr5 27899758 27900077 + 2 NA Intergenic HERVL-int|LTR|ERVL 387748 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 251-296 chr5 32430919 32431140 + 2 NA intron (NM_016107, intron 2 of 19) AluJb|SINE|Alu 13711 NM_016107 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 414-18 chr1 171657021 171657347 + 2 NA Intergenic Intergenic -4496 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 249-286 chr4 272368 272536 + 2 NA exon (NM_001137608, exon 4 of 4) exon (NM_001137608, exon 4 of 4) 33022 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 520-252 chr6 11944115 11944631 + 2 NA Intergenic L2c|LINE|L2 56871 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 194-153 chr4 115469905 115470086 + 2 NA Intergenic Intergenic -356375 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 194-95 chr2 107172180 107172306 + 2 NA intron (NR_049853, intron 2 of 3) L1MC3|LINE|L1 177282 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 290-71 chr11 27027908 27028189 + 2 NA Intergenic Intergenic -12767 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 254-213 chr2 228962338 228962513 + 2 NA Intergenic Intergenic 269667 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 253-221 chr20 18541178 18541406 + 2 NA intron (NM_032986, intron 12 of 19) Tigger1|DNA|TcMar-Tigger -26128 NM_001348958 388789 Hs.349092 NM_001348957 ENSG00000232388 SMIM26 LINC00493 small integral membrane protein 26 protein-coding 461-106 chr17 53588077 53588461 + 2 NA Intergenic L1PA17|LINE|L1 -234658 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 237-387 chr8 119276771 119276928 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -29992 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 204-304 chr9 29709152 29709271 + 2 NA Intergenic MLT1E1A-int|LTR|ERVL-MaLR -495610 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 293-319 chr4 154215490 154215681 + 2 NA Intergenic Intergenic 276214 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 463-53 chr11 38714510 38714837 + 2 NA Intergenic Intergenic 65815 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 125-5 chr10 43548245 43548351 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 20161 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 515-279 chr9 108336629 108337017 + 2 NA Intergenic L1M6B|LINE|L1 519163 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 333-5 chr1 34533572 34533814 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 136001 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 237-72 chr12 38371052 38371247 + 2 NA Intergenic Intergenic 54375 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 346-15 chr1 107036721 107036895 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -19866 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 334-215 chr17 80667532 80667815 + 2 NA intron (NM_020761, intron 3 of 33) intron (NM_020761, intron 3 of 33) 122835 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 653-46 chr15 90677072 90677398 + 2 NA intron (NR_120372, intron 2 of 3) L1M5|LINE|L1 17001 NR_120371 101929765 Hs.615348 NR_120371 ENSG00000245479 LINC01585 - long intergenic non-protein coding RNA 1585 ncRNA 438-86 chr15 100174905 100175240 + 2 NA intron (NM_139057, intron 8 of 21) intron (NM_139057, intron 8 of 21) 166903 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 281-101 chr13 39825496 39825697 + 2 NA Intergenic Intergenic -161461 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 357-255 chr22 28575547 28575847 + 2 NA intron (NM_001145418, intron 2 of 22) L1MA3|LINE|L1 104168 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 270-172 chr19 57689408 57689633 + 2 NA non-coding (NR_073102, exon 2 of 2) non-coding (NR_073102, exon 2 of 2) 7543 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 455-83 chr15 96068816 96069173 + 2 NA Intergenic Intergenic 58847 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 449-66 chr13 39164105 39164518 + 2 NA Intergenic L1ME3|LINE|L1 125855 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 357-484 chr9 82394189 82394479 + 2 NA Intergenic Intergenic 405562 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 158-99 chr5 173134968 173135074 + 2 NA 3' UTR (NM_153607, exon 9 of 9) 3' UTR (NM_153607, exon 9 of 9) -9510 NM_013979 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 297-503 chr9 2388122 2388288 + 2 NA Intergenic Intergenic 229749 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 146-66 chr4 121517225 121517338 + 2 NA Intergenic Intergenic -136263 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 338-310 chr21 35085174 35085368 + 2 NA Intergenic Intergenic -35973 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 311-446 chr6 133256356 133256578 + 2 NA intron (NM_172103, intron 1 of 18) MIR|SINE|MIR 14968 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 391-40 chr10 61017660 61017968 + 2 NA intron (NR_108052, intron 1 of 1) intron (NR_108052, intron 1 of 1) 1539 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 302-56 chr10 102980632 102980859 + 2 NA intron (NM_199076, intron 1 of 6) HAL1|LINE|L1 -62410 NR_160733 107984265 NR_160733 LOC107984265 - uncharacterized LOC107984265 ncRNA 584-104 chr3 105238404 105238804 + 2 NA Intergenic MER65A|LTR|ERV1 -128109 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 259-411 chr8 121500488 121500627 + 2 NA Intergenic L1MA7|LINE|L1 -138789 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 433-91 chr15 54441795 54442174 + 2 NA intron (NM_001329919, intron 18 of 31) L1MA4A|LINE|L1 429336 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 430-315 chr8 112109560 112109945 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -533741 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 368-252 chr2 182654086 182654302 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -62063 NR_073365 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 294-153 chr16 59783589 59783747 + 2 NA Intergenic L1MC3|LINE|L1 -28477 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 381-416 chrX 77812077 77812416 + 2 NA Intergenic L1PA4|LINE|L1 -26030 NM_000489 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 296-401 chr6 66961530 66961742 + 2 NA Intergenic HERV16-int|LTR|ERVL -1093715 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 202-218 chr5 161672192 161672334 + 2 NA Intergenic Intergenic -13458 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 296-64 chr10 111919566 111919795 + 2 NA Intergenic Intergenic 264085 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 274-229 chr2 236712089 236712309 + 2 NA Intergenic MLT2B2|LTR|ERVL 142374 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 290-117 chr13 36018106 36018256 + 2 NA intron (NM_001330071, intron 3 of 16) intron (NM_001330071, intron 3 of 16) 113201 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 217-383 chr8 138694289 138694476 + 2 NA intron (NM_152888, intron 34 of 64) intron (NM_152888, intron 34 of 64) -196652 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 214-230 chr4 33565574 33565729 + 2 NA Intergenic L1ME3B|LINE|L1 474242 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 265-271 chr4 71163034 71163180 + 2 NA Intergenic Intergenic -24152 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 245-275 chr5 30512791 30513004 + 2 NA Intergenic Intergenic 632337 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 361-186 chr18 43139234 43139425 + 2 NA Intergenic Intergenic -23637 NM_001272077 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 259-258 chr3 116197718 116197920 + 2 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -162205 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 230-377 chr8 101921538 101921694 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -62816 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 715-64 chr4 89358642 89359215 + 2 NA Intergenic Intergenic -51128 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 507-141 chr2 175816733 175817149 + 2 NA Intergenic L1ME1|LINE|L1 185326 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 310-315 chr3 6588043 6588255 + 2 NA Intergenic L1MD|LINE|L1 217300 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 529-111 chr2 118204239 118204742 + 2 NA Intergenic Intergenic -18104 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 346-21 chr1 119031206 119031526 + 2 NA 3' UTR (NM_201263, exon 6 of 6) 3' UTR (NM_201263, exon 6 of 6) -16039 NR_126447 104472716 Hs.689536 NR_126447 WARS2-IT1 - WARS2 intronic transcript 1 ncRNA 213-267 chr7 86915114 86915291 + 2 NA intron (NM_001291991, intron 11 of 20) intron (NM_001291991, intron 11 of 20) 50697 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 520-49 chr11 38983897 38984305 + 2 NA Intergenic L1MD2|LINE|L1 335243 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 270-35 chr10 52918697 52918963 + 2 NA Intergenic Intergenic -147130 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 361-437 chr8 61942194 61942440 + 2 NA Intergenic Intergenic 52478 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 292-16 chr1 92904320 92904551 + 2 NA intron (NM_001006605, intron 1 of 4) intron (NM_001006605, intron 1 of 4) -27285 NM_001252271 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 376-256 chr3 104726506 104726804 + 2 NA Intergenic Intergenic -640058 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 281-352 chr5 32076536 32076799 + 2 NA intron (NM_178140, intron 18 of 24) L1MB5|LINE|L1 97652 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 261-287 chr4 82768381 82768635 + 2 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) -15078 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 149-6 chr1 183962032 183962124 + 2 NA intron (NM_015101, intron 6 of 11) L2b|LINE|L2 75650 NM_001303421 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 404-26 chr10 20735338 20735596 + 2 NA Intergenic LTR33|LTR|ERVL 162135 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 202-79 chr14 86686820 86686990 + 2 NA Intergenic Intergenic -218873 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 526-267 chr9 108770163 108770500 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 85655 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 294-465 chr8 67903691 67903846 + 2 NA Intergenic MER110A|LTR|ERV1 -48278 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 254-313 chr5 81938001 81938227 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -33909 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 314-229 chr17 63177322 63177557 + 2 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 211204 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 282-428 chr7 68602714 68602886 + 2 NA Intergenic AluYc|SINE|Alu 582547 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 551-168 chr5 129523599 129524111 + 2 NA intron (NM_133638, intron 3 of 22) L1P3|LINE|L1 -63166 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 339-315 chr20 28884403 28884615 + 2 NA Intergenic ALR/Alpha|Satellite|centr -195881 NR_132316 102723316 NR_132316 FRG1DP - FSHD region gene 1 family member D, pseudogene pseudo 624-11 chr1 236373749 236374207 + 2 NA Intergenic L1MCa|LINE|L1 -20308 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 129-37 chr2 80389213 80389285 + 2 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 75870 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 191-64 chr15 95888186 95888312 + 2 NA Intergenic Intergenic 239592 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 115-50 chr9 96523873 96523944 + 2 NA intron (NR_147239, intron 9 of 14) MER5B|DNA|hAT-Charlie 42923 NM_001077181 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 327-288 chr2 228394034 228394272 + 2 NA Intergenic L1PA16|LINE|L1 -212466 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 378-164 chr16 72671780 72672053 + 2 NA Intergenic L1MB4|LINE|L1 -6946 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 379-297 chr6 109405869 109406183 + 2 NA intron (NR_104429, intron 6 of 8) Tigger9b|DNA|TcMar-Tigger -23214 NM_001142402 8763 Hs.520313 NM_006016 ENSG00000135535 CD164 DFNA66|MGC-24|MGC-24v|MUC-24|endolyn CD164 molecule protein-coding 309-418 chr5 6014703 6014968 + 2 NA Intergenic Intergenic 322457 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 259-379 chr8 34660915 34661155 + 2 NA Intergenic Intergenic -122886 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 323-461 chr6 69768441 69768726 + 2 NA intron (NM_001367272, intron 3 of 15) L1MB7|LINE|L1 27883 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 345-20 chr1 125046687 125046897 + 2 NA Intergenic ALR/Alpha|Satellite|centr 3527680 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 257-94 chr12 93666807 93666997 + 2 NA Intergenic Intergenic -10469 NR_135147 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 237-33 chr10 66997200 66997374 + 2 NA intron (NR_111911, intron 1 of 6) intron (NR_111911, intron 1 of 6) 14866 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 230-341 chr7 11319912 11320066 + 2 NA Intergenic LTR33|LTR|ERVL 346117 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 269-16 chr1 114057019 114057191 + 2 NA Intergenic Intergenic 77631 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 310-564 chr9 138080889 138081071 + 2 NA intron (NM_001243812, intron 35 of 45) Charlie20a|DNA|hAT-Charlie -35909 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 432-18 chr1 208477515 208477941 + 2 NA Intergenic Intergenic -233344 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 270-56 chr11 47307232 47307417 + 2 NA intron (NM_130476, intron 22 of 32) intron (NM_130476, intron 22 of 32) -35214 NR_120569 101928943 Hs.664956 NR_120568 ENSG00000256746 LOC101928943 - uncharacterized LOC101928943 ncRNA 337-136 chr13 71337404 71337664 + 2 NA Intergenic (ATATACT)n|Simple_repeat|Simple_repeat 322393 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 331-219 chr18 22850565 22850806 + 2 NA Intergenic Intergenic -63848 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 399-30 chr10 29188504 29188763 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -100437 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 733-26 chr18 37222648 37223017 + 2 NA non-coding (NR_136304, exon 12 of 12) non-coding (NR_136304, exon 12 of 12) -51628 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 231-164 chr2 75247716 75247873 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -48274 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 311-326 chr22 43581271 43581432 + 2 NA intron (NM_198856, intron 22 of 29) intron (NM_198856, intron 22 of 29) 65097 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 202-280 chrX 82341984 82342146 + 2 NA Intergenic Intergenic 1139963 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 359-467 chr8 61133604 61133919 + 2 NA Intergenic L2c|LINE|L2 -154209 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 345-474 chr6 141761499 141761807 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 327146 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 240-427 chr8 133725365 133725551 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -41392 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 325-512 chr7 87326868 87327046 + 2 NA intron (NR_015381, intron 2 of 2) LTR8|LTR|ERV1 18535 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 483-281 chr9 24046876 24047191 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -196432 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 756-3 chr10 4654246 4654899 + 2 NA intron (NR_024475, intron 3 of 3) L1M5|LINE|L1 -1584 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 364-339 chr5 36539828 36540108 + 2 NA Intergenic Intergenic -66387 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 328-233 chr19 36433394 36433662 + 2 NA Intergenic Intergenic 12354 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 409-222 chr4 96092405 96092676 + 2 NA Intergenic Intergenic -218163 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 428-40 chr11 121808452 121808823 + 2 NA Intergenic Intergenic 291207 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 495-202 chr5 101040528 101040992 + 2 NA Intergenic L1MC5|LINE|L1 -137478 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 485-187 chr3 104479298 104479675 + 2 NA Intergenic MLT2A2|LTR|ERVL -887227 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 165-55 chr2 124999623 124999745 + 2 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat 974397 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 350-138 chr14 66695777 66696078 + 2 NA intron (NM_001024218, intron 2 of 21) L1MC1|LINE|L1 188520 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 385-169 chr2 36397768 36398092 + 2 NA intron (NM_016441, intron 2 of 16) intron (NM_016441, intron 2 of 16) 42152 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 268-420 chr8 129038882 129039032 + 2 NA Intergenic L1MEf|LINE|L1 -72956 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 209-318 chr8 83439141 83439315 + 2 NA Intergenic (TTTAA)n|Simple_repeat|Simple_repeat 35470 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 580-205 chr9 26404924 26405284 + 2 NA Intergenic Intergenic 338429 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 236-4 chr1 30515927 30516145 + 2 NA Intergenic Intergenic -202736 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 366-139 chr15 59299779 59300110 + 2 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 72927 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 300-364 chr5 75183496 75183654 + 2 NA intron (NM_001164443, intron 10 of 24) L1MA6|LINE|L1 53303 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 451-68 chr14 61935716 61936026 + 2 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 8176 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 118-33 chr3 33426178 33426270 + 2 NA intron (NM_001128160, intron 1 of 14) intron (NM_001128160, intron 1 of 14) 14154 NM_001128160 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 519-8 chr1 84222135 84222426 + 2 NA intron (NM_182948, intron 9 of 9) L1MA4A|LINE|L1 40648 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 378-97 chr12 13577576 13577766 + 2 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -200926 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 537-275 chr9 83722890 83723372 + 2 NA Intergenic HERVL40-int|LTR|ERVL 14800 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 355-352 chr4 23095073 23095260 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 381077 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 581-111 chr4 13344784 13345136 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 139380 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 292-482 chrX 152004456 152004678 + 2 NA Intergenic L1MEb|LINE|L1 -29891 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 384-235 chr3 105386163 105386444 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 19394 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 384-309 chr5 169709391 169709696 + 2 NA intron (NR_156756, intron 15 of 52) AluSx|SINE|Alu 72268 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 331-15 chr1 102347742 102348004 + 2 NA Intergenic Intergenic -350639 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 318-433 chr5 36708244 36708475 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 101753 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 465-315 chr9 34911232 34911623 + 2 NA Intergenic AluSg7|SINE|Alu -15663 NM_001309426 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 486-198 chr3 18821011 18821437 + 2 NA Intergenic Intergenic -327286 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 258-342 chr6 48590183 48590370 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -521587 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 478-44 chr11 79692978 79693346 + 2 NA Intergenic Intergenic -252132 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 359-303 chr22 30058798 30059003 + 2 NA intron (NR_110541, intron 1 of 4) L1M4c|LINE|L1 21357 NR_110541 101929664 Hs.592197 NR_110541 HORMAD2-AS1 MTMR3-AS1 HORMAD2 and MTMR3 antisense RNA 1 ncRNA 445-135 chr2 126299100 126299518 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -181324 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 373-235 chr20 19521286 19521632 + 2 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -236863 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 213-115 chr17 54221944 54222127 + 2 NA Intergenic Intergenic 399108 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 360-121 chr14 63172562 63172764 + 2 NA Intergenic MIR|SINE|MIR -31780 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 457-199 chr5 71912281 71912625 + 2 NA Intergenic L1ME1|LINE|L1 193178 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 404-187 chr2 228469629 228469871 + 2 NA Intergenic MER50|LTR|ERV1 141645 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 408-174 chr2 184679111 184679438 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 80745 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 356-59 chr10 82188867 82189178 + 2 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 43898 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 766-7 chr11 5968833 5969473 + 2 NA promoter-TSS (NM_001146033) promoter-TSS (NM_001146033) -659 NM_001146033 390084 Hs.719888 NM_001146033 ENSG00000188691 OR56A5 OR56A5P olfactory receptor family 56 subfamily A member 5 protein-coding 320-215 chr18 3918030 3918242 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) 32783 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 368-390 chr6 51329534 51329782 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -292212 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 389-119 chr16 24355419 24355644 + 2 NA intron (NM_006539, intron 3 of 3) AluJo|SINE|Alu 99978 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 602-30 chr13 113494071 113494619 + 2 NA intron (NR_146222, intron 1 of 11) intron (NR_146222, intron 1 of 11) 3324 NM_001349746 55002 Hs.317593 NM_017905 ENSG00000150403 TMCO3 C13orf11 transmembrane and coiled-coil domains 3 protein-coding 403-47 chr11 23984996 23985232 + 2 NA Intergenic Intergenic -511939 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 333-514 chr6 139006435 139006751 + 2 NA Intergenic Intergenic -18332 NM_001286611 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 417-301 chr9 27793570 27793895 + 2 NA Intergenic L1MEg1|LINE|L1 -219866 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 314-508 chr6 132196335 132196553 + 2 NA Intergenic L2a|LINE|L2 62466 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 383-110 chr14 55937103 55937380 + 2 NA Intergenic MIRb|SINE|MIR -140567 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 227-358 chr7 118607532 118607696 + 2 NA Intergenic L1MEf|LINE|L1 382910 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 443-146 chr2 56339439 56339813 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -153856 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 279-312 chr5 15587366 15587533 + 2 NA intron (NM_001278317, intron 1 of 3) L2b|LINE|L2 27553 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 331-86 chr11 43014035 43014248 + 2 NA Intergenic L1MCb|LINE|L1 255228 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 302-74 chr11 56084797 56085047 + 2 NA Intergenic Intergenic -8386 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 165-45 chr18 41094498 41094620 + 2 NA Intergenic Intergenic 426118 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 521-207 chr5 161461743 161462233 + 2 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 86136 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 523-32 chr10 58948352 58948810 + 2 NA Intergenic Intergenic -50937 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 391-186 chr2 147640507 147640747 + 2 NA Intergenic Intergenic -203890 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 239-141 chr18 6911763 6911996 + 2 NA intron (NM_001010000, intron 16 of 16) A-rich|Low_complexity|Low_complexity 17990 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 293-478 chr9 105114906 105115180 + 2 NA Intergenic Intergenic -129562 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 607-21 chr10 65838537 65838924 + 2 NA Intergenic Intergenic 267305 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 223-354 chr8 126870497 126870667 + 2 NA Intergenic Intergenic -142572 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 243-216 chr2 98165264 98165431 + 2 NA intron (NM_001345864, intron 2 of 21) intron (NM_001345864, intron 2 of 21) 15814 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 244-139 chr19 2630438 2630634 + 2 NA promoter-TSS (NR_107004) promoter-TSS (NR_107004) -179 NR_107004 102465838 NR_107004 ENSG00000277904 MIR7850 hsa-mir-7850 microRNA 7850 ncRNA 328-287 chr2 156388919 156389187 + 2 NA Intergenic AluSx|SINE|Alu -46499 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 351-15 chr1 143215828 143216028 + 2 NA Intergenic Intergenic 206664 NR_027354 645166 Hs.744183 NR_027354 LSP1P5 - LSP1 pseudogene 5 pseudo 350-427 chr5 169373265 169373528 + 2 NA Intergenic L1PB3|LINE|L1 -72257 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 239-360 chr6 141184837 141185028 + 2 NA Intergenic Intergenic 501118 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 292-337 chr5 12026513 12026751 + 2 NA Intergenic L1MC5a|LINE|L1 -122186 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 243-314 chr4 29403809 29403931 + 2 NA Intergenic Intergenic 189578 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 227-249 chr4 42168748 42168925 + 2 NA Intergenic MLT2B1|LTR|ERVL -16181 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 411-100 chr15 38480150 38480557 + 2 NA intron (NM_173611, intron 6 of 7) L1MB7|LINE|L1 26226 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 342-120 chr12 99647035 99647330 + 2 NA promoter-TSS (NM_153364) promoter-TSS (NM_153364) -571 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 253-338 chr5 105708289 105708495 + 2 NA Intergenic L1MA7|LINE|L1 608918 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 162-67 chr2 194954247 194954357 + 2 NA Intergenic Intergenic 223707 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 283-189 chr18 1937885 1938136 + 2 NA Intergenic L1PA11|LINE|L1 -578381 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 242-219 chr21 23951525 23951755 + 2 NA Intergenic MER68|LTR|ERVL 369737 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 707-25 chr14 71603209 71603637 + 2 NA intron (NM_001354286, intron 6 of 24) L1MA4A|LINE|L1 17125 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 320-226 chr18 51590289 51590602 + 2 NA Intergenic L2a|LINE|L2 198403 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 400-123 chr16 83634720 83634997 + 2 NA intron (NM_001220489, intron 7 of 12) L1MD2|LINE|L1 126512 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 241-425 chr9 68526845 68527002 + 2 NA intron (NM_021965, intron 10 of 10) Tigger13a|DNA|TcMar-Tigger 13944 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 318-378 chr3 191665792 191666039 + 2 NA Intergenic Intergenic 204752 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 222-115 chr14 84200047 84200208 + 2 NA Intergenic Intergenic -1071805 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 321-315 chr2 204367010 204367215 + 2 NA Intergenic Intergenic -178363 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 297-63 chr11 3622497 3622700 + 2 NA Intergenic Intergenic -3862 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel subfamily C member 2 (pseudogene) pseudo 242-170 chr2 43445929 43446153 + 2 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 149933 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 310-228 chr2 42750396 42750698 + 2 NA intron (NM_001330443, intron 16 of 16) HAL1|LINE|L1 13714 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 237-138 chr16 76714954 76715117 + 2 NA Intergenic Intergenic 80037 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 422-151 chr2 104971720 104972002 + 2 NA intron (NR_110603, intron 1 of 2) L2a|LINE|L2 -66208 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 410-251 chr5 130414610 130415002 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 510341 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 288-437 chr8 62688148 62688387 + 2 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -289594 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 238-294 chr5 35966273 35966410 + 2 NA intron (NM_001171873, intron 4 of 5) intron (NM_001171873, intron 4 of 5) 25049 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 348-359 chr4 60383222 60383426 + 2 NA Intergenic Intergenic -539295 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 250-16 chr1 107986041 107986229 + 2 NA intron (NR_046653, intron 1 of 2) intron (NR_046653, intron 1 of 2) -20955 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 342-461 chr6 78213641 78213889 + 2 NA Intergenic Intergenic 325544 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 325-197 chr16 51063621 51063829 + 2 NA intron (NR_039672, intron 2 of 6) L1ME4a|LINE|L1 45967 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 645-75 chr3 13409894 13410371 + 2 NA intron (NM_024923, intron 1 of 39) AluSx|SINE|Alu 10190 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 183-58 chr16 68075662 68075793 + 2 NA intron (NM_017803, intron 14 of 16) intron (NM_017803, intron 14 of 16) -9643 NM_004555 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 378-456 chr9 90875938 90876157 + 2 NA intron (NM_001174167, intron 9 of 13) AluSq2|SINE|Alu 48627 NM_001174167 6850 Hs.371720 NM_003177 ENSG00000165025 SYK p72-Syk spleen associated tyrosine kinase protein-coding 247-188 chr2 36544779 36544944 + 2 NA intron (NM_016441, intron 15 of 16) intron (NM_016441, intron 15 of 16) 53307 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 394-298 chr7 18270416 18270772 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -19498 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 333-123 chr12 125472937 125473109 + 2 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 146407 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 488-142 chr2 123149713 123150072 + 2 NA Intergenic MIR|SINE|MIR -76411 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 238-36 chr10 36247461 36247642 + 2 NA Intergenic Intergenic 469249 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 652-95 chr5 26033996 26034423 + 2 NA Intergenic AluJr|SINE|Alu 843256 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 366-375 chr6 61706228 61706554 + 2 NA intron (NR_146874, intron 7 of 13) intron (NR_146874, intron 7 of 13) 132261 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 278-332 chr5 34436193 34436433 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -191589 NR_146599 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 333-271 chr2 152966128 152966359 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 247606 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 410-71 chr12 96870613 96870930 + 2 NA intron (NM_001306084, intron 67 of 67) L1MEf|LINE|L1 -36486 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 223-140 chr19 56553958 56554126 + 2 NA TTS (NM_001308440) TTS (NM_001308440) -13426 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 311-385 chr4 97534306 97534580 + 2 NA Intergenic L1ME2|LINE|L1 167517 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 267-240 chr21 29438547 29438752 + 2 NA Intergenic Intergenic -57398 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 371-62 chr11 11513577 11513832 + 2 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) 108301 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 244-23 chr1 218660317 218660454 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 150290 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 215-15 chr1 187182444 187182588 + 2 NA intron (NR_126347, intron 1 of 3) L1ME4b|LINE|L1 89674 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 597-61 chr17 72055782 72056196 + 2 NA intron (NR_110877, intron 1 of 2) intron (NR_110877, intron 1 of 2) 1745 NR_110877 102723517 Hs.600042 NR_110877 ENSG00000234899 LOC102723517 - uncharacterized LOC102723517 ncRNA 343-167 chr15 92557393 92557674 + 2 NA Intergenic L1MA7|LINE|L1 14730 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 427-105 chr19 56623316 56623575 + 2 NA 3' UTR (NM_021216, exon 3 of 3) 3' UTR (NM_021216, exon 3 of 3) -19714 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 443-86 chr13 111656090 111656388 + 2 NA Intergenic Intergenic 60230 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 287-383 chr7 62837071 62837262 + 2 NA Intergenic ALR/Alpha|Satellite|centr 466890 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 309-149 chr14 51956718 51956886 + 2 NA intron (NM_001243773, intron 3 of 3) Kanga11a|DNA|TcMar-Tc2 -32744 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 257-108 chr14 59585776 59585953 + 2 NA Intergenic Intergenic -9052 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 374-264 chr3 139965292 139965639 + 2 NA intron (NM_022131, intron 1 of 16) intron (NM_022131, intron 1 of 16) 30280 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 370-376 chr5 119972186 119972537 + 2 NA Intergenic L1MA9|LINE|L1 342802 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 545-135 chr22 34620462 34620843 + 2 NA Intergenic LTR103_Mam|LTR|ERV1? 377264 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 364-80 chr11 4035330 4035556 + 2 NA intron (NM_001277962, intron 3 of 12) intron (NM_001277962, intron 3 of 12) -59242 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 401-67 chr12 48014408 48014731 + 2 NA Intergenic MIR3|SINE|MIR -10093 NM_001844 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 438-211 chr5 24296529 24296825 + 2 NA Intergenic Intergenic 345329 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 368-92 chr11 128327460 128327672 + 2 NA Intergenic Intergenic 118800 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 260-461 chr9 122045964 122046197 + 2 NA intron (NM_194252, intron 1 of 3) L1MB3|LINE|L1 47526 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 451-256 chrX 45278568 45278882 + 2 NA Intergenic L1PA14|LINE|L1 -77849 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 477-34 chr10 32234413 32234863 + 2 NA Intergenic Tigger1a_Art|DNA|TcMar-Tigger 112520 NM_025209 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 321-287 chr2 77547430 77547618 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -25091 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 209-169 chr2 226247724 226247879 + 2 NA Intergenic Intergenic 105007 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 181 chr1 28612912 28613078 + 2 NA intron (NM_005644, intron 4 of 5) MIRb|SINE|MIR 20500 NM_001193532 115273 Hs.652321 NM_152304 ENSG00000188060 RAB42 - RAB42, member RAS oncogene family protein-coding 202-159 chr3 40519986 40520162 + 2 NA Intergenic AluSz|SINE|Alu -4804 NM_001287245 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 255-197 chr2 73357443 73357617 + 2 NA Intergenic L1MB8|LINE|L1 -28228 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 513-263 chr7 43133262 43133626 + 2 NA intron (NR_135295, intron 3 of 6) intron (NR_135295, intron 3 of 6) 15548 NR_135295 100127950 Hs.666610 NR_135295 ENSG00000181211 HECW1-IT1 - HECW1 intronic transcript 1 ncRNA 156-64 chr3 1069891 1069993 + 2 NA Intergenic Intergenic -23082 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 340-261 chr2 79189641 79189941 + 2 NA Intergenic MER67C|LTR|ERV1 -30038 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 381-85 chr12 41162363 41162642 + 2 NA Intergenic Intergenic -25818 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 272-332 chr5 24990435 24990622 + 2 NA Intergenic L1M3|LINE|L1 -149945 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 553-119 chr2 100189248 100189691 + 2 NA Intergenic Kanga1b|DNA|TcMar-Tc2 -18785 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 201-77 chr14 59184072 59184207 + 2 NA Intergenic Intergenic -4528 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 267-198 chr2 111636100 111636273 + 2 NA Intergenic L1MEd|LINE|L1 134948 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 507-195 chr5 20631103 20631431 + 2 NA intron (NR_149120, intron 1 of 11) intron (NR_149120, intron 1 of 11) -15732 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 190-142 chr5 13157201 13157354 + 2 NA Intergenic Intergenic -124391 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 510-168 chr20 48049106 48049470 + 2 NA Intergenic L1MD2|LINE|L1 -59171 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 524-3 chr1 40891670 40892156 + 2 NA Intergenic AluJo|SINE|Alu -29550 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 623-10 chr10 7951521 7952136 + 2 NA intron (NM_031923, intron 2 of 6) MIRb|SINE|MIR 100663 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 728-92 chr7 42779204 42779731 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -73020 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 235-116 chr15 77771023 77771185 + 2 NA intron (NM_001301186, intron 2 of 5) L3|LINE|CR1 15945 NM_001301195 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 323-267 chr2 119107784 119108091 + 2 NA Intergenic Intergenic 50814 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 374-10 chr1 113445171 113445471 + 2 NA intron (NM_001142782, intron 1 of 20) AluJr|SINE|Alu 54806 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 200-67 chr13 101404720 101404903 + 2 NA intron (NM_001350749, intron 1 of 43) intron (NM_001350749, intron 1 of 43) 11697 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 158-5 chr1 167082014 167082112 + 2 NA intron (NM_005814, intron 1 of 6) intron (NM_005814, intron 1 of 6) 8314 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 427-31 chr10 107625541 107625878 + 2 NA Intergenic L1MA4|LINE|L1 443584 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 414-327 chr8 71880456 71880777 + 2 NA intron (NR_033651, intron 1 of 2) L1PA13|LINE|L1 -36120 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 114-27 chr2 40644584 40644683 + 2 NA Intergenic L1M5|LINE|L1 -132198 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 332-168 chr15 81842257 81842577 + 2 NA Intergenic Intergenic 203601 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 300-228 chr2 234708890 234709107 + 2 NA intron (NR_132376, intron 2 of 2) intron (NR_132376, intron 2 of 2) 26330 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 345-185 chr16 10207840 10208107 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -25065 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 478-165 chr21 16360261 16360555 + 2 NA intron (NR_027790, intron 4 of 7) L1MA6|LINE|L1 -58795 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 297-521 chrUn_GL000216v2 62700 62939 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 156-102 chr8 5884899 5884981 + 2 NA Intergenic Intergenic 521608 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 303-428 chr7 68431156 68431352 + 2 NA Intergenic AluSc|SINE|Alu 411001 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 373-169 chr18 65768628 65768975 + 2 NA intron (NM_001362438, intron 2 of 11) intron (NM_001362438, intron 2 of 11) 17789 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 257-32 chr10 11191182 11191347 + 2 NA intron (NM_001326339, intron 2 of 11) intron (NM_001326339, intron 2 of 11) 26234 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 391-5 chr1 48991031 48991375 + 2 NA intron (NM_001323575, intron 5 of 12) L1MA3|LINE|L1 -214234 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 303-143 chr15 71128428 71128696 + 2 NA Intergenic L1MDa|LINE|L1 -12887 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 333-493 chr6 20884368 20884581 + 2 NA intron (NM_017774, intron 9 of 15) L1MB4|LINE|L1 350017 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 690-80 chr4 76315618 76316058 + 2 NA intron (NM_001042784, intron 23 of 23) L1PB1|LINE|L1 9812 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 286-325 chr4 142005477 142005752 + 2 NA Intergenic L1ME1|LINE|L1 369031 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 557-44 chr12 60760937 60761275 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 1071736 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 429-13 chr1 114122890 114123174 + 2 NA intron (NM_001366223, intron 3 of 7) intron (NM_001366223, intron 3 of 7) 29408 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 288-131 chr15 47151549 47151729 + 2 NA Intergenic Intergenic -32450 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 279-227 chr20 60100341 60100578 + 2 NA intron (NR_109917, intron 4 of 4) intron (NR_109917, intron 4 of 4) 12773 NR_109918 729296 Hs.534781 NR_109916 LOC729296 - uncharacterized LOC729296 ncRNA 278-7 chr1 78543253 78543484 + 2 NA Intergenic L1M5|LINE|L1 52394 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 230-108 chr14 45297010 45297165 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -43885 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 534-84 chr16 62755489 62755937 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -719275 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 258-293 chr4 73886148 73886366 + 2 NA Intergenic Intergenic 16864 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 334-263 chr2 61319939 61320265 + 2 NA intron (NM_014709, intron 21 of 79) MER6|DNA|TcMar-Tigger 97275 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 221-249 chr5 122296471 122296636 + 2 NA Intergenic Intergenic -15138 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 282-483 chr9 42389384 42389528 + 2 NA Intergenic Intergenic 179893 NR_126050 103908605 Hs.721139 NR_126050 LOC103908605 - uncharacterized LOC103908605 ncRNA 311-464 chr7 23793515 23793697 + 2 NA intron (NM_001260505, intron 22 of 22) L1ME1|LINE|L1 83387 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 300-488 chr9 29811171 29811463 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 597137 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 397-69 chr12 97238994 97239334 + 2 NA Intergenic Intergenic -223612 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 401-204 chr3 52952493 52952778 + 2 NA intron (NM_016329, intron 3 of 20) MLT1A0|LTR|ERVL-MaLR -55087 NM_198563 375346 Hs.744189 NM_198563 ENSG00000213533 STIMATE TMEM110 STIM activating enhancer protein-coding 184-191 chrX 98787311 98787492 + 2 NA Intergenic Intergenic -1222866 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 353-146 chr14 66966518 66966842 + 2 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -222760 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 151-93 chr9 113024888 113025021 + 2 NA Intergenic Intergenic -12762 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 310-358 chr4 29739831 29740097 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 525672 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 364-430 chr8 26986762 26987016 + 2 NA Intergenic L1MEi|LINE|L1 62074 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 343-215 chr19 40030743 40030934 + 2 NA 3' UTR (NM_001005851, exon 5 of 5) 3' UTR (NM_001005851, exon 5 of 5) 25393 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 445-259 chr7 95904180 95904556 + 2 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 131862 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 224-243 chr5 24016508 24016727 + 2 NA intron (NR_131245, intron 4 of 4) Tigger3a|DNA|TcMar-Tigger 65269 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 357-338 chr5 32848875 32849200 + 2 NA Intergenic L2a|LINE|L2 -98406 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 518-46 chr10 125951330 125951692 + 2 NA intron (NM_001363549, intron 1 of 10) Arthur1|DNA|hAT-Tip100 21762 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 336-91 chr11 40685354 40685626 + 2 NA intron (NM_020929, intron 1 of 4) L1ME3Cz|LINE|L1 -392360 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 349-307 chr21 30088351 30088585 + 2 NA Intergenic Intergenic 78337 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 315-469 chr8 51131810 51132034 + 2 NA Intergenic L1MB5|LINE|L1 677523 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 392-276 chr6 41264512 41264829 + 2 NA Intergenic L1P4|LINE|L1 15293 NR_002794 221438 Hs.639392 NR_002794 TREML5P TLT5|TREML2P|TREML2P1 triggering receptor expressed on myeloid cells like 5, pseudogene pseudo 430-216 chr4 82138730 82139153 + 2 NA Intergenic Intergenic 235050 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 373-318 chr5 46042327 46042620 + 2 NA Intergenic ALR/Alpha|Satellite|centr -346093 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 302-120 chr14 25675826 25676021 + 2 NA Intergenic Intergenic -625626 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 188-2 chr1 34393319 34393471 + 2 NA Intergenic Intergenic 216488 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 263-149 chr17 11578470 11578715 + 2 NA Intergenic L1ME1|LINE|L1 -19878 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 427-47 chr12 46064534 46064785 + 2 NA Intergenic L1MC3|LINE|L1 -74085 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 242-48 chr10 120491766 120491972 + 2 NA intron (NR_134516, intron 2 of 4) L1MC5a|LINE|L1 34915 NM_001318169 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 281-349 chr5 13037331 13037543 + 2 NA Intergenic L1MC3|LINE|L1 -4551 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 248-12 chr1 107239115 107239337 + 2 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 91157 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 247-189 chr2 41816549 41816720 + 2 NA Intergenic Intergenic -60921 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 363-276 chr22 47969300 47969604 + 2 NA Intergenic Intergenic -304912 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 507 chr1 24613708 24614128 + 2 NA Intergenic L1MB7|LINE|L1 -29384 NM_001366578 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 448-90 chr15 93685927 93686292 + 2 NA Intergenic L1PA16|LINE|L1 -170451 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 241-382 chr7 139907831 139908043 + 2 NA intron (NM_001314028, intron 3 of 12) L1MDa|LINE|L1 78673 NM_030984 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 311 chr1 19674109 19674357 + 2 NA intron (NM_000871, intron 1 of 2) L1ME3G|LINE|L1 9358 NM_000871 3362 Hs.22180 NM_000871 ENSG00000158748 HTR6 5-HT6|5-HT6R 5-hydroxytryptamine receptor 6 protein-coding 172-144 chr9 35145496 35145657 + 2 NA Intergenic L1MA2|LINE|L1 -16433 NM_001371189 687-100 chr6 18604751 18605293 + 2 NA intron (NR_149116, intron 4 of 7) intron (NR_149116, intron 4 of 7) 33238 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 277-449 chr9 90472657 90472927 + 2 NA intron (NR_034157, intron 5 of 5) L1MDb|LINE|L1 -39303 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 251-299 chr5 38684276 38684485 + 2 NA Intergenic Intergenic 35893 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 349-299 chr21 19905820 19906106 + 2 NA Intergenic Intergenic -6208 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 422-53 chr11 129655848 129656094 + 2 NA Intergenic L1PA13|LINE|L1 -38702 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 216-107 chr14 101367262 101367442 + 2 NA Intergenic Intergenic 40570 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 547-260 chr9 24132566 24132996 + 2 NA Intergenic Intergenic -282180 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 371-410 chr9 28243250 28243542 + 2 NA intron (NM_152570, intron 5 of 6) AluSx1|SINE|Alu 475909 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 531-115 chr2 104965769 104966281 + 2 NA intron (NR_110603, intron 1 of 2) intron (NR_110603, intron 1 of 2) -72044 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 320-339 chr3 33752804 33753035 + 2 NA Intergenic HAL1|LINE|L1 -34665 NM_001365627 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 519-63 chr14 69845067 69845417 + 2 NA Intergenic MIR|SINE|MIR 33482 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 504-96 chr17 5606913 5607256 + 2 NA Intergenic MIRb|SINE|MIR -22575 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 287-253 chr3 94678526 94678733 + 2 NA Intergenic L1PA10|LINE|L1 -259634 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 391-154 chr19 36417113 36417347 + 2 NA intron (NM_001321917, intron 1 of 4) intron (NM_001321917, intron 1 of 4) 1414 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 318-22 chr1 107126182 107126430 + 2 NA Intergenic Intergenic -13782 NM_014917 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 294-516 chrX 88580457 88580687 + 2 NA Intergenic L1PA16|LINE|L1 -166653 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 298-25 chr1 214797224 214797420 + 2 NA Intergenic L1PA17|LINE|L1 194127 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 376-434 chr9 137907576 137907885 + 2 NA intron (NM_001243812, intron 3 of 45) L1ME3C|LINE|L1 -15160 NR_121583 100133077 Hs.640081 NR_121583 ENSG00000203987 LOC100133077 - uncharacterized LOC100133077 ncRNA 233-198 chr2 221821994 221822161 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -247875 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 357-208 chr2 104593034 104593217 + 2 NA Intergenic HERVL-int|LTR|ERVL -82616 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 278-333 chr5 38876586 38876790 + 2 NA intron (NM_003999, intron 3 of 17) intron (NM_003999, intron 3 of 17) 30676 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 373-107 chr14 45041500 45041775 + 2 NA intron (NR_131765, intron 11 of 19) L1M5|LINE|L1 -42479 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 334-184 chr15 101298349 101298595 + 2 NA Intergenic L1ME3A|LINE|L1 -3224 NR_135506 6627 Hs.528763 NM_003090 ENSG00000131876 SNRPA1 Lea1|U2A' small nuclear ribonucleoprotein polypeptide A' protein-coding 187-68 chr17 47639558 47639709 + 2 NA Intergenic L1ME2|LINE|L1 -10286 NM_002265 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 553-222 chr7 77207662 77208146 + 2 NA intron (NM_020879, intron 2 of 18) intron (NM_020879, intron 2 of 18) -8085 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 321-349 chr22 34002856 34003037 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -80058 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 756-17 chr16 68094488 68094958 + 2 NA intron (NM_004555, intron 1 of 10) intron (NM_004555, intron 1 of 10) 9353 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 294-488 chr9 24007123 24007286 + 2 NA Intergenic Intergenic -156603 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 356-71 chr10 129991705 129991949 + 2 NA Intergenic L1M1|LINE|L1 -27553 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 384-394 chr9 30656758 30657117 + 2 NA Intergenic Intergenic -248483 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 269-80 chr12 8557366 8557576 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -16566 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 605-94 chr5 105340823 105341319 + 2 NA Intergenic L1M4c|LINE|L1 241597 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 319-67 chr10 75572600 75572800 + 2 NA intron (NM_001305581, intron 2 of 6) L1MEd|LINE|L1 20242 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 496-137 chr2 104178980 104179307 + 2 NA Intergenic L1M1|LINE|L1 229189 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 277-391 chr7 125117306 125117512 + 2 NA intron (NR_125718, intron 5 of 10) L1MC5|LINE|L1 -67160 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 279-287 chr4 41984746 41984960 + 2 NA 3' UTR (NM_001029955, exon 1 of 1) 3' UTR (NM_001029955, exon 1 of 1) 3097 NM_001029955 285429 Hs.213307 NM_001029955 ENSG00000182308 DCAF4L1 WDR21B DDB1 and CUL4 associated factor 4 like 1 protein-coding 291-101 chr12 63499216 63499365 + 2 NA Intergenic Intergenic 169203 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 699-4 chr1 60351946 60352514 + 2 NA Intergenic Intergenic 270455 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 352-146 chr14 61722246 61722502 + 2 NA intron (NM_181054, intron 4 of 13) AluJr|SINE|Alu 24752 NM_001243084 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 308-353 chr4 108283386 108283571 + 2 NA Intergenic L1MA9|LINE|L1 111358 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 236-154 chr19 12271682 12271893 + 2 NA TTS (NM_001164276) TTS (NM_001164276) 22825 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 207-167 chr21 18659900 18660089 + 2 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 26170 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 245-38 chr10 36505805 36505955 + 2 NA Intergenic Intergenic -619977 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 276-356 chr4 167726872 167727068 + 2 NA Intergenic Intergenic -365567 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 448-241 chr6 61855697 61856014 + 2 NA intron (NM_001350622, intron 6 of 9) LTR16C|LTR|ERVL 281725 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 254-165 chr18 56518570 56518737 + 2 NA Intergenic Intergenic 119939 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 479-280 chrX 34384972 34385289 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -252800 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 272-376 chr6 38514804 38514971 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 33291 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 142-70 chr7 14514655 14514780 + 2 NA intron (NM_001350717, intron 19 of 24) MIR|SINE|MIR 326733 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 179-129 chr8 142657800 142657922 + 2 NA 3' UTR (NM_003724, exon 2 of 2) 3' UTR (NM_003724, exon 2 of 2) 12106 NM_001279352 8629 Hs.535903 NM_003724 ENSG00000234616 JRK JH8|jerky Jrk helix-turn-helix protein protein-coding 307-201 chr18 26282104 26282315 + 2 NA intron (NM_005640, intron 6 of 14) intron (NM_005640, intron 6 of 14) 55764 NM_001293725 6875 Hs.369519 NM_005640 ENSG00000141384 TAF4B SPGF13|TAF2C2|TAFII105 TATA-box binding protein associated factor 4b protein-coding 345-429 chr5 103763178 103763481 + 2 NA Intergenic Intergenic -200540 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 411-195 chr3 178879480 178879705 + 2 NA Intergenic Intergenic -19187 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 347-507 chr8 77874433 77874677 + 2 NA Intergenic Intergenic 423858 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 596-148 chr7 30566515 30566966 + 2 NA intron (NR_038889, intron 3 of 6) PABL_B|LTR|ERV1 11039 NR_038889 401320 Hs.561708 NR_038889 GARS-DT - GARS divergent transcript ncRNA 467-227 chr5 80240533 80240848 + 2 NA intron (NR_126061, intron 1 of 13) AluJb|SINE|Alu 15358 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 362-457 chr9 27775745 27775952 + 2 NA Intergenic Intergenic -201982 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 767-10 chr12 15300787 15301353 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -21438 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 295-114 chr13 43851207 43851383 + 2 NA intron (NM_144974, intron 6 of 6) intron (NM_144974, intron 6 of 6) -27883 NM_001128303 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 445-125 chr2 100768987 100769232 + 2 NA Intergenic Intergenic -51030 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 235-215 chr22 25794766 25794992 + 2 NA intron (NM_001318245, intron 11 of 43) L1ME3|LINE|L1 52691 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 202-240 chr7 42353228 42353372 + 2 NA Intergenic L1MD|LINE|L1 -116091 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 549-62 chr15 27513489 27513825 + 2 NA intron (NM_033223, intron 6 of 9) L1M7|LINE|L1 -352338 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 346-30 chr1 186901820 186902040 + 2 NA intron (NM_001311193, intron 5 of 15) intron (NM_001311193, intron 5 of 15) 72981 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 250-323 chr4 126120038 126120204 + 2 NA Intergenic L2c|LINE|L2 612862 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 271-363 chr5 158628710 158628895 + 2 NA Intergenic MIRb|SINE|MIR -219029 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 317-432 chr6 150278670 150278860 + 2 NA Intergenic Intergenic -90247 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 601-159 chrX 31403969 31404401 + 2 NA intron (NM_000109, intron 60 of 78) intron (NM_000109, intron 60 of 78) 104113 NM_004014 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 247-395 chr8 31418726 31418949 + 2 NA Intergenic Intergenic -220915 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 253-229 chr20 59712086 59712320 + 2 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) -9007 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 590-143 chr6 54085577 54085934 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -25688 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 354-38 chr1 237955634 237955970 + 2 NA Intergenic Intergenic -64880 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 675-87 chr7 49571264 49571790 + 2 NA Intergenic L1M4|LINE|L1 -202111 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 447-228 chr6 60239021 60239315 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1334962 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 313-83 chr11 75112954 75113164 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -16169 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 905-30 chr6 47999062 47999685 + 2 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 69316 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 291-143 chr14 98782647 98782889 + 2 NA Intergenic Intergenic 71155 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 611-120 chr5 97807984 97808477 + 2 NA Intergenic MER41-int|LTR|ERV1 -32528 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 198-129 chr2 124121967 124122155 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 96774 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 218-86 chr13 114328375 114328571 + 2 NA Intergenic Intergenic 5475 NR_126391 104355150 Hs.569217 NR_126391 LINC01054 - long intergenic non-protein coding RNA 1054 ncRNA 249-254 chr3 12106318 12106489 + 2 NA intron (NM_133625, intron 1 of 12) MLT1E2|LTR|ERVL-MaLR 52509 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 143-2 chr1 159829342 159829426 + 2 NA intron (NM_001330741, intron 1 of 3) L2c|LINE|L2 2511 NM_001330741 56833 Hs.438683 NM_020125 ENSG00000158714 SLAMF8 BLAME|CD353|SBBI42 SLAM family member 8 protein-coding 570-59 chr14 54544544 54545024 + 2 NA Intergenic L1MB8|LINE|L1 -22828 NM_015589 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 231-241 chr3 174893429 174893582 + 2 NA intron (NM_207015, intron 1 of 13) L1MA1|LINE|L1 34171 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 256-201 chr2 98019807 98019960 + 2 NA Intergenic Intergenic -23935 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 336-503 chr7 3136900 3137150 + 2 NA Intergenic AluSz|SINE|Alu 21548 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 327-106 chr12 8722119 8722296 + 2 NA intron (NR_147950, intron 2 of 8) Tigger1|DNA|TcMar-Tigger 24216 NM_001297776 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 147-44 chr2 74651576 74651691 + 2 NA Intergenic Intergenic -2595 NM_001271662 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 448-275 chr8 65079204 65079623 + 2 NA Intergenic Intergenic 100927 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 399-218 chr3 156266724 156266979 + 2 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) -24136 NM_172159 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 514-161 chr2 225979548 225980003 + 2 NA Intergenic Intergenic -163019 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 348-180 chr17 10970553 10970759 + 2 NA Intergenic L1MC3|LINE|L1 -132569 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 512-185 chr4 33680279 33680622 + 2 NA Intergenic MER4D1|LTR|ERV1 359443 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 264-170 chr17 72242289 72242509 + 2 NA Intergenic AluJr|SINE|Alu -100412 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 285-311 chr4 121231500 121231701 + 2 NA Intergenic Intergenic -4117 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 177-123 chr4 117410218 117410338 + 2 NA Intergenic Intergenic -18120 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 586-155 chr8 87642338 87642802 + 2 NA Intergenic L1MC4|LINE|L1 231445 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 118-41 chr5 31778787 31778886 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 139705 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 310-365 chr4 42502074 42502336 + 2 NA intron (NM_001105529, intron 23 of 35) L2b|LINE|L2 104717 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 142-22 chr14 47339898 47339982 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 3306 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 355-379 chr4 114283977 114284230 + 2 NA Intergenic Intergenic -304456 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 246-111 chr14 42686672 42686837 + 2 NA Intergenic Intergenic 1079898 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 206-73 chr15 38978683 38978804 + 2 NA Intergenic L1PA17|LINE|L1 -271926 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 173-129 chr7 45681325 45681467 + 2 NA intron (NM_021116, intron 11 of 19) intron (NM_021116, intron 11 of 19) 87622 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 307-313 chr3 139499055 139499343 + 2 NA intron (NR_121609, intron 3 of 4) intron (NR_121609, intron 3 of 4) -22683 NM_004164 5948 Hs.655516 NM_004164 ENSG00000114113 RBP2 CRABP-II|CRBP2|CRBPII|RBPC2 retinol binding protein 2 protein-coding 414-62 chr12 21955389 21955618 + 2 NA Intergenic L1ME1|LINE|L1 -18809 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 166-72 chr3 50116513 50116634 + 2 NA non-coding (NR_135301, exon 4 of 4) non-coding (NR_135301, exon 4 of 4) -15585 NR_045388 100775107 Hs.439480 NR_045388 ENSG00000281691 RBM5-AS1 LUST RBM5 antisense RNA 1 ncRNA 402-332 chr8 18407114 18407417 + 2 NA Intergenic L1M4|LINE|L1 15983 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 278-280 chr3 90119409 90119676 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 1011921 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 359-29 chr1 171962795 171963027 + 2 NA intron (NM_001278252, intron 2 of 14) L1MC1|LINE|L1 98719 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 452-128 chr2 66030395 66030831 + 2 NA Intergenic Intergenic 327715 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 338-35 chr1 232212888 232213177 + 2 NA Intergenic Intergenic 287198 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 322-539 chr8 109231518 109231764 + 2 NA Intergenic MIR|SINE|MIR 98292 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 328-24 chr1 173636987 173637175 + 2 NA TTS (NM_001195190) TTS (NM_001195190) 1743 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 410-16 chr1 175693351 175693687 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 50076 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 309-446 chr5 87960660 87960894 + 2 NA Intergenic Intergenic 298735 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 656-36 chr12 82677236 82677688 + 2 NA Intergenic Intergenic -9444 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 282-380 chr5 76949928 76950186 + 2 NA Intergenic Intergenic -2988 NM_001882 1393 Hs.115617 NM_001882 ENSG00000145708 CRHBP CRF-BP|CRFBP corticotropin releasing hormone binding protein protein-coding 324-160 chr14 62243801 62244053 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -103954 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 506-25 chr1 199354873 199355204 + 2 NA intron (NR_147896, intron 3 of 3) L2b|LINE|L2 206440 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 395-68 chr12 39706387 39706662 + 2 NA intron (NM_001031748, intron 11 of 12) L1M1|LINE|L1 80341 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 409-118 chr18 29034533 29034880 + 2 NA Intergenic Intergenic -857576 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 279-378 chr6 156271478 156271736 + 2 NA Intergenic Intergenic -107143 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 512-63 chr12 40407500 40407856 + 2 NA intron (NM_173600, intron 4 of 173) MER115|DNA|hAT-Tip100 14284 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 197-84 chr19 36405861 36406010 + 2 NA intron (NM_001321917, intron 3 of 4) MIR|SINE|MIR 12709 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 443-69 chr12 62803008 62803419 + 2 NA intron (NM_020700, intron 2 of 9) intron (NM_020700, intron 2 of 9) 131937 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 268-116 chr14 52737456 52737681 + 2 NA intron (NM_001130701, intron 2 of 11) intron (NM_001130701, intron 2 of 11) 7402 NM_001130701 6815 Hs.364980 NM_145251 ENSG00000198252 STYX - serine/threonine/tyrosine interacting protein protein-coding 621-45 chr16 77115713 77116148 + 2 NA Intergenic L1M4|LINE|L1 -75260 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 331-386 chr4 95682343 95682577 + 2 NA Intergenic L1MA9|LINE|L1 -133487 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 211-248 chr5 165661727 165661890 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 1191529 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 341-431 chr5 31628221 31628404 + 2 NA Intergenic AluJo|SINE|Alu -10819 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 215-188 chr3 40230154 40230286 + 2 NA intron (NM_001284424, intron 11 of 15) intron (NM_001284424, intron 11 of 15) 79478 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 279-368 chr6 90691197 90691431 + 2 NA Intergenic MER3|DNA|hAT-Charlie -104242 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 194-108 chr20 21944031 21944200 + 2 NA Intergenic Intergenic -109975 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 375-413 chr8 108941166 108941438 + 2 NA Intergenic L1ME3Cz|LINE|L1 -145326 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 360-197 chr19 52458264 52458545 + 2 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 4851 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 391-320 chr6 169142721 169143068 + 2 NA Intergenic Intergenic 19407 NR_132622 101929484 Hs.364166 NR_132622 ENSG00000223485 LINC01615 - long intergenic non-protein coding RNA 1615 ncRNA 339-597 chr8 136971401 136971628 + 2 NA Intergenic Intergenic 440716 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 320-145 chr14 46464899 46465216 + 2 NA intron (NR_102701, intron 5 of 5) AluSg4|SINE|Alu -6302 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 192-209 chr8 108944818 108944996 + 2 NA Intergenic Intergenic -141721 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 397-153 chr2 63137756 63138025 + 2 NA intron (NR_148704, intron 18 of 18) L1PA13|LINE|L1 -18348 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 691-45 chr2 116801161 116801634 + 2 NA Intergenic L1ME1|LINE|L1 -1013294 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 648-37 chr14 51947281 51947827 + 2 NA intron (NM_001243773, intron 2 of 3) MLT1D|LTR|ERVL-MaLR -28983 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 277-383 chr7 81867839 81868013 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -97879 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 968-31 chr8 137229518 137230148 + 2 NA Intergenic Intergenic 183755 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 582-53 chr17 62853843 62854257 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 45548 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 300-70 chr11 74925084 74925301 + 2 NA intron (NM_001270380, intron 7 of 14) MIR3|SINE|MIR 23899 NM_001270380 143570 Hs.370145 NM_182969 ENSG00000166435 XRRA1 - X-ray radiation resistance associated 1 protein-coding 325-263 chr2 53425972 53426212 + 2 NA Intergenic Intergenic -341691 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 296-133 chr14 37728670 37728924 + 2 NA intron (NM_001310135, intron 9 of 32) intron (NM_001310135, intron 9 of 32) -43586 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 413-12 chr1 103903234 103903604 + 2 NA Intergenic AluY|SINE|Alu 153578 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 357-396 chr6 140578798 140579055 + 2 NA Intergenic L1ME1|LINE|L1 -104888 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 296-207 chr2 2378487 2378760 + 2 NA Intergenic MIRc|SINE|MIR -47348 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 387-3 chr1 64601995 64602279 + 2 NA intron (NM_020925, intron 3 of 26) intron (NM_020925, intron 3 of 26) 22290 NR_039957 100616338 NR_039957 ENSG00000264470 MIR4794 - microRNA 4794 ncRNA 417-79 chr14 45639787 45640035 + 2 NA Intergenic MER72|LTR|ERV1 75691 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 251-48 chr11 13618493 13618674 + 2 NA Intergenic L1PA15|LINE|L1 -50085 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 438-168 chr3 68131123 68131453 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 127041 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 346-200 chr17 72239954 72240152 + 2 NA Intergenic (CTCTGT)n|Simple_repeat|Simple_repeat -102758 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 300-353 chr5 24012095 24012250 + 2 NA intron (NR_131245, intron 4 of 4) L1M2|LINE|L1 60824 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 274-239 chr20 46432924 46433170 + 2 NA intron (NR_146919, intron 2 of 3) ERV3-16A3_I-int|LTR|ERVL 24596 NR_045983 100130934 Hs.712133 NM_173643 ZNF663P ZNF663 zinc finger protein 663, pseudogene pseudo 361-265 chr21 25360428 25360647 + 2 NA Intergenic Intergenic 71164 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 532-52 chr12 83723660 83724058 + 2 NA Intergenic HERVL-int|LTR|ERVL 1036704 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 349-62 chr10 60776788 60777105 + 2 NA Intergenic Intergenic -1385 NM_001170406 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 294-52 chr11 11698126 11698372 + 2 NA Intergenic L1MC5|LINE|L1 -41527 NR_036184 100423026 NR_036184 ENSG00000266645 MIR4299 - microRNA 4299 ncRNA 338-13 chr1 90781273 90781468 + 2 NA Intergenic Intergenic 54791 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 282-148 chr15 86461442 86461671 + 2 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -144588 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 372-419 chr5 162854141 162854380 + 2 NA Intergenic Intergenic -583311 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 264-335 chr5 114038619 114038779 + 2 NA Intergenic L1PA17|LINE|L1 -323371 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 581-4 chr1 109720445 109720885 + 2 NA Intergenic Intergenic 8414 NM_000851 2949 Hs.75652 NM_000851 ENSG00000134201 GSTM5 GSTM5-5|GTM5 glutathione S-transferase mu 5 protein-coding 318-218 chr18 32185324 32185573 + 2 NA Intergenic Intergenic -4591 NM_005925 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 151-50 chr22 31653409 31653539 + 2 NA intron (NM_001326416, intron 1 of 10) intron (NM_001326416, intron 1 of 10) 8741 NM_001326420 23761 Hs.420559 NM_014338 ENSG00000241878 PISD DJ858B16|PSD|PSDC|PSSC|dJ858B16.2 phosphatidylserine decarboxylase protein-coding 322-203 chr17 62403966 62404227 + 2 NA intron (NM_001144933, intron 8 of 11) intron (NM_001144933, intron 8 of 11) -19789 NM_181725 339175 Hs.381204 NM_181725 ENSG00000087995 METTL2A METTL2 methyltransferase like 2A protein-coding 217-45 chr10 61187657 61187803 + 2 NA Intergenic Intergenic 171455 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 607-97 chr3 43464168 43464653 + 2 NA intron (NM_001346464, intron 12 of 13) AluJo|SINE|Alu -112448 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 355-120 chr12 2593314 2593501 + 2 NA intron (NM_199460, intron 19 of 49).2 intron (NM_199460, intron 19 of 49).2 78813 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 310-5 chr1 60554843 60555011 + 2 NA intron (NR_146508, intron 4 of 7) L1ME1|LINE|L1 67758 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 192-139 chr4 7588881 7589040 + 2 NA intron (NM_020777, intron 3 of 26) L2c|LINE|L2 128932 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 236-123 chr14 104924089 104924298 + 2 NA promoter-TSS (NM_001308174) promoter-TSS (NM_001308174) -686 NM_001308174 122618 Hs.407101 NM_138790 ENSG00000166428 PLD4 C14orf175 phospholipase D family member 4 protein-coding 210-41 chr11 25674108 25674243 + 2 NA Intergenic L1MB1|LINE|L1 -514948 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 331-232 chr19 9493316 9493493 + 2 NA intron (NM_152476, intron 2 of 9) AluSx1|SINE|Alu 5212 NM_152476 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 558-124 chr21 29773617 29774031 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 25649 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 318-309 chr2 241586995 241587181 + 2 NA intron (NM_001164356, intron 4 of 4) Ricksha_c|DNA|MULE-MuDR -27945 NR_033346 100379249 Hs.621128 NR_033346 BOK-AS1 BOK-AS|BOKAS|NAToB|NCRNA00151 BOK antisense RNA 1 ncRNA 252-256 chr3 32199651 32199812 + 2 NA Intergenic Intergenic -38948 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 560-67 chr17 53395990 53396384 + 2 NA Intergenic Intergenic 410682 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 686-52 chr20 54605159 54605684 + 2 NA intron (NM_018431, intron 5 of 7) intron (NM_018431, intron 5 of 7) 129828 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 467-203 chr4 64600797 64601246 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -191561 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 247-147 chr16 50416039 50416203 + 2 NA Intergenic L1MB4|LINE|L1 -20988 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 335-132 chr12 122350624 122350892 + 2 NA intron (NM_002956, intron 8 of 24) intron (NM_002956, intron 8 of 24) -44784 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 299-201 chr2 56689903 56690113 + 2 NA Intergenic Intergenic -504238 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 356-374 chr4 166233284 166233479 + 2 NA Intergenic Intergenic 360144 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 314-399 chr3 182149553 182149714 + 2 NA Intergenic Intergenic 197269 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 190-122 chr3 71842093 71842252 + 2 NA Intergenic Intergenic -57024 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 351-358 chr4 137547127 137547409 + 2 NA intron (NR_146553, intron 1 of 1) intron (NR_146553, intron 1 of 1) 1537 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 149-100 chr8 91995769 91995866 + 2 NA intron (NM_004349, intron 5 of 10) AluJo|SINE|Alu 21863 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 276-391 chr6 4828923 4829123 + 2 NA intron (NM_001368127, intron 1 of 5) L1MB4|LINE|L1 -7075 NM_001143970 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 560-84 chr2 134688013 134688468 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 30760 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 427-8 chr1 106629188 106629451 + 2 NA Intergenic Intergenic -188920 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 519-203 chr6 153823852 153824332 + 2 NA Intergenic Intergenic -186404 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 613-23 chr11 24417482 24417986 + 2 NA Intergenic Intergenic -79319 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 222-88 chr12 93116585 93116781 + 2 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) -57683 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 246-110 chr14 37393990 37394225 + 2 NA intron (NM_138731, intron 11 of 13) L1PB1|LINE|L1 196170 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 430-231 chr5 11050312 11050665 + 2 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -289254 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 298-460 chr8 78371986 78372182 + 2 NA Intergenic Intergenic -144256 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 718-43 chr2 122865377 122865921 + 2 NA Intergenic AluSz|SINE|Alu 207832 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 434-123 chr18 55886200 55886537 + 2 NA intron (NR_110755, intron 3 of 3) L1M5|LINE|L1 33831 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 242-209 chr20 9543712 9543882 + 2 NA intron (NM_020341, intron 9 of 10) intron (NM_020341, intron 9 of 10) -28799 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 269-189 chr2 47211158 47211342 + 2 NA intron (NR_110208, intron 3 of 4) intron (NR_110208, intron 3 of 4) -34314 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 292-110 chr12 82062368 82062549 + 2 NA Intergenic Intergenic 108739 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 342-554 chr9 79425966 79426188 + 2 NA Intergenic L1MA5|LINE|L1 -145696 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 272-421 chr7 54913762 54914021 + 2 NA Intergenic Intergenic -105126 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 309-96 chr12 14712357 14712661 + 2 NA Intergenic Intergenic -15910 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 487-37 chr10 36373664 36374054 + 2 NA Intergenic Intergenic 595557 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 162-77 chr21 32077706 32077831 + 2 NA Intergenic L1ME4a|LINE|L1 8527 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 299-313 chr4 27883751 27883992 + 2 NA Intergenic L1MCa|LINE|L1 666392 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 239-425 chr8 131441583 131441769 + 2 NA Intergenic MIRc|SINE|MIR -400767 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 306-181 chr16 36195970 36196148 + 2 NA Intergenic Intergenic 449507 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 232-211 chr20 22131117 22131251 + 2 NA Intergenic L1MA9|LINE|L1 77094 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 515-69 chr14 65030160 65030504 + 2 NA intron (NM_002028, intron 6 of 11) intron (NM_002028, intron 6 of 11) -14356 NR_039855 100616490 NR_039855 ENSG00000266531 MIR4706 mir-4706 microRNA 4706 ncRNA 497-22 chr10 65522575 65522989 + 2 NA Intergenic Intergenic -48643 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 231-246 chr4 19677688 19677839 + 2 NA Intergenic Intergenic -574142 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 303-281 chr3 53414798 53414951 + 2 NA Intergenic AluJr|SINE|Alu -67331 NM_001290205 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 377-405 chr8 92374566 92374780 + 2 NA Intergenic Intergenic -271288 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 234-386 chr8 68962960 68963191 + 2 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 141115 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 578-191 chr9 25298900 25299320 + 2 NA Intergenic Intergenic 379748 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 325-379 chr4 18173751 18173942 + 2 NA Intergenic Intergenic -151971 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 324-571 chr9 95925964 95926188 + 2 NA intron (NM_020207, intron 9 of 18) L1MC2|LINE|L1 50068 NM_001010895 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 394-23 chr1 175790929 175791226 + 2 NA Intergenic Intergenic -47482 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 173-11 chr10 56545998 56546101 + 2 NA Intergenic Intergenic -184776 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 360-456 chr8 75215238 75215480 + 2 NA Intergenic Intergenic 63122 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 317-71 chr10 130880152 130880340 + 2 NA Intergenic Intergenic 82422 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 311-69 chr10 105959175 105959478 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -138993 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 648-100 chr4 33466447 33466918 + 2 NA Intergenic Intergenic 573211 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 449-138 chr2 237068391 237068655 + 2 NA Intergenic HAL1M8|LINE|L1 -12356 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 365-307 chr5 5120701 5120885 + 2 NA Intergenic L1PA14|LINE|L1 19261 NR_109915 101929176 Hs.208717 NR_109915 CTD-2297D10.2 - uncharacterized LOC101929176 ncRNA 312-64 chr10 121099653 121099857 + 2 NA Intergenic Intergenic 248393 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 437-60 chr13 57817534 57817909 + 2 NA Intergenic Intergenic 185977 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 296-316 chr3 171345791 171345940 + 2 NA intron (NM_001161563, intron 2 of 31) L2a|LINE|L2 114540 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 938-11 chr17 14971912 14972660 + 2 NA Intergenic Intergenic -42519 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 726-63 chr5 118517690 118518135 + 2 NA intron (NR_104610, intron 3 of 9) L1MA4|LINE|L1 44205 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 252-375 chr6 89036236 89036471 + 2 NA Intergenic Intergenic -44398 NM_006813 10957 Hs.75969 NM_006813 ENSG00000146278 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline rich nuclear receptor coactivator 1 protein-coding 585-21 chr11 29946207 29946574 + 2 NA Intergenic Intergenic 36003 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 302-355 chr5 125267437 125267599 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -225743 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 270-301 chr5 63224047 63224244 + 2 NA Intergenic HAL1|LINE|L1 645326 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 526-186 chr4 115034432 115034826 + 2 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 78991 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 269-366 chr6 156141282 156141547 + 2 NA Intergenic L1ME1|LINE|L1 194617 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 344-186 chr17 55797679 55797944 + 2 NA intron (NM_001330378, intron 5 of 5) L1MEg|LINE|L1 46706 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 395-38 chr10 62844268 62844549 + 2 NA Intergenic Intergenic -25241 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 298-411 chr6 141090345 141090543 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 406630 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 273-23 chr1 173754670 173754865 + 2 NA intron (NM_014458, intron 5 of 11) intron (NM_014458, intron 5 of 11) 39786 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 256-462 chrX 78640883 78641086 + 2 NA Intergenic L1M4|LINE|L1 18344 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 459-301 chr8 109931477 109931887 + 2 NA Intergenic AluSq|SINE|Alu 44089 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 249-450 chr9 93995546 93995703 + 2 NA Intergenic LTR41B|LTR|ERVL -35189 NM_001253830 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 435-209 chr5 139501303 139501693 + 2 NA Intergenic FLAM_C|SINE|Alu -18740 NM_001301738 340061 Hs.379754 NM_198282 ENSG00000184584 TMEM173 ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|hMITA|hSTING transmembrane protein 173 protein-coding 192-218 chr9 29244567 29244670 + 2 NA Intergenic MLT2F|LTR|ERVL -31017 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 224-304 chr7 145216782 145216942 + 2 NA Intergenic Intergenic -380809 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 365-79 chr11 112677280 112677637 + 2 NA Intergenic MLT2A2|LTR|ERVL -121656 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 383-290 chr4 86879765 86880047 + 2 NA intron (NM_144645, intron 4 of 4) AluJo|SINE|Alu 12516 NM_001369889 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 154-85 chr5 11431955 11432047 + 2 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 156916 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 309-250 chr2 72303558 72303807 + 2 NA intron (NR_135773, intron 19 of 21) L1PREC2|LINE|L1 -155820 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 291-250 chr2 224937194 224937372 + 2 NA intron (NM_014689, intron 1 of 55) MIRc|SINE|MIR 9766 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 278-249 chr20 19307718 19307945 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -23235 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 654-37 chr14 76030530 76030984 + 2 NA intron (NR_045664, intron 3 of 7) L1MC5a|LINE|L1 44994 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 243-77 chr11 106378771 106378949 + 2 NA Intergenic (CTC)n|Simple_repeat|Simple_repeat 127453 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 412-221 chr3 131701134 131701466 + 2 NA intron (NM_130808, intron 3 of 15) intron (NM_130808, intron 3 of 15) -198329 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 209-214 chr3 179762779 179762981 + 2 NA intron (NM_003940, intron 17 of 20) L1MB7|LINE|L1 109840 NM_003940 8975 Hs.175322 NM_003940 ENSG00000058056 USP13 ISOT3|IsoT-3 ubiquitin specific peptidase 13 protein-coding 424-299 chrX 58443818 58444203 + 2 NA Intergenic ALR/Alpha|Satellite|centr -533377 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 345-47 chr10 17119606 17119853 + 2 NA intron (NM_001081, intron 6 of 66) intron (NM_001081, intron 6 of 66) 10088 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 322-544 chr8 125400052 125400299 + 2 NA Intergenic Intergenic -30183 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 338-468 chr6 38222510 38222763 + 2 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -258960 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 327-409 chr5 101516400 101516701 + 2 NA Intergenic MER77|LTR|ERVL -613268 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 364-278 chr3 88896311 88896600 + 2 NA Intergenic Intergenic -211166 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 325-155 chr13 114091989 114092198 + 2 NA intron (NM_001320821, intron 1 of 25).2 L1M1|LINE|L1 -14138 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 565-94 chr20 12896295 12896780 + 2 NA intron (NR_109868, intron 8 of 11) intron (NR_109868, intron 8 of 11) 40426 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 266-55 chr10 130860501 130860683 + 2 NA Intergenic Intergenic 102076 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 385-177 chr2 102800907 102801198 + 2 NA intron (NM_001321345, intron 4 of 4) intron (NM_001321345, intron 4 of 4) 39021 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 355-298 chr22 20666520 20666777 + 2 NA Intergenic L1M4|LINE|L1 -22907 NR_024592 266697 Hs.558711 NR_024592 POM121L4P - POM121 transmembrane nucleoporin like 4, pseudogene pseudo 191-91 chr19 56375457 56375615 + 2 NA intron (NR_033418, intron 5 of 5) intron (NR_033418, intron 5 of 5) -7153 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 766-21 chr15 95411434 95412074 + 2 NA Intergenic Intergenic -21339 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 370-399 chr6 91560574 91560791 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 39022 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 559-166 chr7 9736427 9736904 + 2 NA Intergenic Intergenic 102395 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 687-27 chr11 112985622 112986107 + 2 NA intron (NM_181351, intron 1 of 18) L1MA9|LINE|L1 -22404 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 457-277 chrX 57775808 57776228 + 2 NA Intergenic MER57A-int|LTR|ERV1 -95758 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 528-146 chr20 42497329 42497680 + 2 NA intron (NM_133170, intron 7 of 31) FLAM_C|SINE|Alu -187979 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 337-128 chr12 128878167 128878361 + 2 NA intron (NM_144669, intron 2 of 7) intron (NM_144669, intron 2 of 7) 24786 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 380-354 chr7 4406540 4406762 + 2 NA Intergenic Intergenic -271814 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 220-277 chr5 18773677 18773809 + 2 NA Intergenic Intergenic 966469 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 447-35 chr10 107880273 107880598 + 2 NA intron (NR_125760, intron 4 of 4) L1MA3|LINE|L1 188858 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 248-163 chr19 53355246 53355435 + 2 NA 3' UTR (NM_138374, exon 4 of 4) 3' UTR (NM_138374, exon 4 of 4) -10365 NR_145445 170958 Hs.352638 NM_001348156 ENSG00000203326 ZNF525 - zinc finger protein 525 protein-coding 346-124 chr13 97598861 97599180 + 2 NA Intergenic L1ME2|LINE|L1 164851 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 410-6 chr1 88528120 88528464 + 2 NA Intergenic L3|LINE|CR1 -155852 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 248-204 chr2 144707218 144707428 + 2 NA intron (NR_033870, intron 1 of 4) AluSg|SINE|Alu 39356 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 204-256 chr6 123240339 123240500 + 2 NA intron (NM_006073, intron 38 of 40) intron (NM_006073, intron 38 of 40) -199185 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 323-295 chr20 24361776 24362035 + 2 NA Intergenic Intergenic -107294 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 134-67 chr5 45387227 45387330 + 2 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 309102 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 261-65 chr11 79530984 79531182 + 2 NA Intergenic MIRc|SINE|MIR -90053 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 606-25 chr10 124409814 124410306 + 2 NA intron (NM_001171814, intron 1 of 8) intron (NM_001171814, intron 1 of 8) 8863 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 401-138 chr18 73265682 73265982 + 2 NA Intergenic Intergenic -1334 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 237-315 chr5 163310471 163310659 + 2 NA Intergenic LTR84b|LTR|ERVL -127006 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 561-143 chr4 38223139 38223625 + 2 NA Intergenic Intergenic 103428 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 389-314 chr6 49027736 49028061 + 2 NA Intergenic Intergenic 435355 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 329-415 chr4 93103722 93103896 + 2 NA intron (NM_001510, intron 3 of 15) intron (NM_001510, intron 3 of 15) -724944 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 180-126 chr5 12567962 12568104 + 2 NA Intergenic Intergenic -6824 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 568-150 chr4 64439090 64439552 + 2 NA Intergenic Intergenic -29861 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 312-501 chr7 135094076 135094293 + 2 NA 3' UTR (NM_001305630, exon 3 of 3) 3' UTR (NM_001305630, exon 3 of 3) -53888 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 633-9 chr10 14130340 14130794 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 56283 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 732-59 chr3 40342936 40343598 + 2 NA Intergenic L1M5|LINE|L1 33560 NM_005875 10289 Hs.315230 NM_005875 ENSG00000114784 EIF1B GC20 eukaryotic translation initiation factor 1B protein-coding 517-172 chr3 34378975 34379381 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 580548 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 423-195 chr4 58585610 58585832 + 2 NA Intergenic L1PA7|LINE|L1 -49393 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 238-32 chr10 24776500 24776682 + 2 NA Intergenic AluJo|SINE|Alu -52704 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 231-22 chr1 198069571 198069769 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -87328 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 195-186 chr5 25441094 25441221 + 2 NA Intergenic Intergenic 250204 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 760-80 chr9 123865186 123865850 + 2 NA intron (NM_001352968, intron 2 of 18) intron (NM_001352968, intron 2 of 18) 64608 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 410-15 chr1 167324850 167325136 + 2 NA intron (NR_037163, intron 2 of 16) intron (NR_037163, intron 2 of 16) -4077 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 282-201 chr2 49319885 49320051 + 2 NA Intergenic Intergenic -165441 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 233-348 chr7 14950682 14950836 + 2 NA intron (NM_001350717, intron 1 of 24) L1M4b|LINE|L1 24099 NM_001350722 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 175-145 chr6 90832416 90832561 + 2 NA Intergenic Intergenic -245416 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 542-171 chr5 98404647 98405039 + 2 NA Intergenic Intergenic -243604 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 356-427 chr6 91008384 91008675 + 2 NA Intergenic L1M7|LINE|L1 -421457 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 407-351 chrX 27135018 27135244 + 2 NA Intergenic Intergenic 328210 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 384-208 chr21 28126398 28126653 + 2 NA intron (NR_126012, intron 5 of 5) L1MA3|LINE|L1 36122 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 313-126 chr13 78162014 78162246 + 2 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 107275 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 357-430 chr8 35468460 35468735 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -75795 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 317-242 chr2 114583178 114583439 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 121731 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 175-79 chr2 101662749 101662866 + 2 NA Intergenic L1M5|LINE|L1 -34896 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 126-6 chr1 201709902 201709992 + 2 NA intron (NR_046696, intron 2 of 2) intron (NR_046696, intron 2 of 2) -9561 NR_049823 100847050 NR_049823 ENSG00000264802 MIR5191 - microRNA 5191 ncRNA 313-252 chr2 53746197 53746399 + 2 NA intron (NM_001201965, intron 2 of 8) AluJo|SINE|Alu -21485 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 242-283 chr4 169463269 169463508 + 2 NA exon (NM_001199398, exon 26 of 35) exon (NM_001199398, exon 26 of 35) 149195 NM_012224 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 185-142 chr3 170561351 170561507 + 2 NA intron (NM_020949, intron 1 of 7) MIRc|SINE|MIR 24646 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 521-133 chr2 193884490 193884910 + 2 NA Intergenic Intergenic -459569 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 133-16 chr12 15687392 15687478 + 2 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 101953 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 507-215 chr6 44566805 44567162 + 2 NA Intergenic L2a|LINE|L2 -15102 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 330-206 chr17 33983037 33983267 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 173654 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 257-376 chr7 18473342 18473584 + 2 NA intron (NM_001204144, intron 3 of 12) intron (NM_001204144, intron 3 of 12) -22247 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 220-185 chr2 172678799 172678988 + 2 NA Intergenic Intergenic -56952 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 562-78 chr17 67672911 67673427 + 2 NA intron (NM_181671, intron 7 of 9) intron (NM_181671, intron 7 of 9) -44664 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 200-29 chr10 19378991 19379181 + 2 NA intron (NM_001142308, intron 26 of 39) L1MEd|LINE|L1 330285 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 342-492 chr7 81825508 81825786 + 2 NA Intergenic L1PA6|LINE|L1 -55600 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 345-228 chr18 69609560 69609760 + 2 NA intron (NM_152721, intron 3 of 7) L1MB1|LINE|L1 139729 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 283-10 chr1 75712411 75712657 + 2 NA Intergenic Intergenic -11813 NM_001286043 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase medium chain protein-coding 441-127 chr2 68464529 68464794 + 2 NA intron (NM_001024680, intron 3 of 3) intron (NM_001024680, intron 3 of 3) 2633 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 197-17 chr1 220452092 220452212 + 2 NA Intergenic Intergenic -75984 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 198-245 chr8 110888200 110888331 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 139168 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 278-147 chr16 75710236 75710498 + 2 NA Intergenic MER41-int|LTR|ERV1 -8906 NM_001351309 100033411 NM_001351307 ENSG00000282757 DUXB - double homeobox B protein-coding 583-139 chr5 143844443 143844873 + 2 NA Intergenic L2b|LINE|L2 32497 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 319-290 chr20 40822152 40822325 + 2 NA Intergenic Intergenic -107615 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 280-196 chr2 74120852 74121113 + 2 NA Intergenic Intergenic 26930 NM_212552 388962 Hs.61472 NM_212552 ENSG00000163170 BOLA3 MMDS2 bolA family member 3 protein-coding 435-62 chr12 37795616 37795891 + 2 NA Intergenic ALR/Alpha|Satellite|centr -521021 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 365-300 chr4 111867684 111867909 + 2 NA Intergenic (AACTTTAT)n|Simple_repeat|Simple_repeat -277658 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 342-555 chr9 80542739 80543014 + 2 NA Intergenic Intergenic 567853 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 416-90 chr12 45742492 45742808 + 2 NA intron (NM_152641, intron 3 of 20) L1MC5|LINE|L1 12941 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 574-173 chr7 153262789 153263301 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 149189 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 340-497 chr7 8613306 8613549 + 2 NA intron (NM_152745, intron 2 of 2) CR1-3_Croc|LINE|CR1 179818 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 311-46 chr10 26364532 26364797 + 2 NA Intergenic AluSx|SINE|Alu -73677 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 313-478 chr6 124236137 124236401 + 2 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -46736 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 744-21 chr13 54144111 54144600 + 2 NA Intergenic AluJb|SINE|Alu -11484 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 539-181 chr6 90431035 90431390 + 2 NA Intergenic L1MB3|LINE|L1 118470 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 307-47 chr10 38794619 38794827 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 98127 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 669-76 chr3 177306004 177306455 + 2 NA intron (NR_047465, intron 1 of 1) intron (NR_047465, intron 1 of 1) 11787 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 314-611 chr9 84399788 84400075 + 2 NA Intergenic AluSq2|SINE|Alu -31204 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 318-231 chr19 30692093 30692280 + 2 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 319802 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 521-215 chr6 58446418 58446787 + 2 NA Intergenic ALR/Alpha|Satellite|centr -485156 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 270-237 chr3 88330289 88330518 + 2 NA Intergenic L2a|LINE|L2 -8053 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 311-541 chr9 30132393 30132615 + 2 NA Intergenic Intergenic 275950 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 323-417 chr5 75003211 75003423 + 2 NA Intergenic L1MCa|LINE|L1 49241 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 254-84 chr12 72870598 72870775 + 2 NA Intergenic Intergenic -288504 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 250-221 chr2 125513310 125513488 + 2 NA Intergenic Intergenic 604586 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 393-154 chr2 6785280 6785594 + 2 NA Intergenic MLT2B1|LTR|ERVL -15126 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 321-478 chr5 133468964 133469194 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -41373 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 364-293 chr4 5549761 5550098 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 24773 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 267-115 chr14 85066722 85066908 + 2 NA Intergenic Intergenic -205117 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 272-112 chr14 46910153 46910325 + 2 NA intron (NM_001113498, intron 10 of 16) intron (NM_001113498, intron 10 of 16) -258458 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 355-205 chr18 1726907 1727201 + 2 NA Intergenic MER3|DNA|hAT-Charlie -367425 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 505-268 chr6 66645600 66645931 + 2 NA Intergenic L1M3e|LINE|L1 857886 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 505-137 chr2 32566287 32566697 + 2 NA intron (NR_125793, intron 1 of 1) AluJr|SINE|Alu 8326 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 358-280 chr22 35033876 35034182 + 2 NA Intergenic MIR|SINE|MIR -32129 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 282-383 chr5 102756613 102756864 + 2 NA intron (NR_157231, intron 1 of 14) AluJb|SINE|Alu 1433 NR_157231 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 790-42 chr6 7953568 7954158 + 2 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) -32239 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 908-20 chr2 102127697 102128355 + 2 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) -13765 NM_001320981 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 234-171 chr2 78683129 78683319 + 2 NA Intergenic L1PBb|LINE|L1 137693 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 292-445 chr8 121168377 121168546 + 2 NA Intergenic Intergenic -356415 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 209-344 chr9 27748855 27749017 + 2 NA Intergenic L2c|LINE|L2 -175070 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 496-284 chr8 82944246 82944555 + 2 NA intron (NR_134295, intron 2 of 3) L1MD|LINE|L1 32296 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 335-250 chr2 96715917 96716193 + 2 NA intron (NM_001322354, intron 3 of 7) intron (NM_001322354, intron 3 of 7) 24021 NM_030805 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 233-50 chr10 125413110 125413257 + 2 NA Intergenic Intergenic -161188 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 272-50 chr10 66410449 66410713 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -515455 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 296-119 chr13 54157868 54158095 + 2 NA Intergenic Intergenic -25110 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 267-452 chr9 91702159 91702355 + 2 NA Intergenic L1MA9|LINE|L1 -65912 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 277-368 chr7 14710103 14710309 + 2 NA intron (NM_001350717, intron 6 of 24) L1MEg|LINE|L1 131244 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 169-87 chr4 60494754 60494868 + 2 NA Intergenic L1M4|LINE|L1 -427808 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 337-100 chr11 100047543 100047827 + 2 NA intron (NM_001243270, intron 8 of 23) MLT2B3|LTR|ERVL 491540 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 700-6 chr1 233809351 233809904 + 2 NA Intergenic LTR103b_Mam|LTR|ERV1? -95049 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 363-94 chr12 14742085 14742381 + 2 NA Intergenic AluSx1|SINE|Alu 28898 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 352-513 chr7 139282616 139282902 + 2 NA intron (NM_173569, intron 14 of 17) intron (NM_173569, intron 14 of 17) 51522 NM_173569 254048 Hs.153458 NM_173569 ENSG00000157741 UBN2 - ubinuclein 2 protein-coding 310-308 chr22 19796665 19796908 + 2 NA intron (NM_053004, intron 7 of 7) intron (NM_053004, intron 7 of 7) 40083 NM_080646 6899 Hs.173984 NM_005992 ENSG00000184058 TBX1 CAFS|CATCH22|CTHM|DGCR|DGS|DORV|TBX1C|TGA|VCF|VCFS T-box transcription factor 1 protein-coding 267-410 chr8 35636734 35636915 + 2 NA intron (NM_001322818, intron 4 of 16) LTR86B2|LTR|ERVL 73496 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 318-108 chr11 74383285 74383500 + 2 NA intron (NM_173582, intron 1 of 13) intron (NM_173582, intron 1 of 13) 15041 NM_173582 283209 Hs.26612 NM_173582 ENSG00000165434 PGM2L1 BM32A|PMMLP phosphoglucomutase 2 like 1 protein-coding 485-317 chrX 15790784 15791189 + 2 NA exon (NM_005089, exon 2 of 11) exon (NM_005089, exon 2 of 11) 535 NM_005089 8233 Hs.171909 NM_005089 ENSG00000169249 ZRSR2 U2AF1-RS2|U2AF1L2|U2AF1RS2|URP|ZC3H22 zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 protein-coding 299-469 chr8 131460886 131461052 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -420060 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 551-114 chr3 13286453 13286811 + 2 NA Intergenic Intergenic 133690 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 181-120 chr5 37962964 37963098 + 2 NA Intergenic L1MEc|LINE|L1 14540 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 323-425 chr5 98192202 98192502 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -31113 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 272-238 chr20 7960294 7960525 + 2 NA Intergenic L1MEd|LINE|L1 -19951 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 155-42 chr15 67469660 67469781 + 2 NA intron (NR_040051, intron 2 of 5) MIR|SINE|MIR 51253 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 451-71 chr14 68523660 68523956 + 2 NA intron (NM_001321818, intron 10 of 10) MER8|DNA|TcMar-Tigger 104979 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 584-103 chr3 68649373 68649923 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 149011 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 293-43 chr10 80834581 80834793 + 2 NA Intergenic L1M1|LINE|L1 184890 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 338-190 chr16 17324082 17324399 + 2 NA intron (NM_022166, intron 2 of 11) intron (NM_022166, intron 2 of 11) 146720 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 303-375 chr5 124909585 124909856 + 2 NA Intergenic (TTCCC)n|Simple_repeat|Simple_repeat -127111 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 166-73 chr3 73732088 73732189 + 2 NA Intergenic L1ME4a|LINE|L1 -77106 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 436-26 chr10 18168031 18168424 + 2 NA intron (NM_201593, intron 2 of 13) AluJo|SINE|Alu 27803 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 288-268 chr3 94864429 94864707 + 2 NA Intergenic L1PA16|LINE|L1 -73695 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 529-60 chr13 97712453 97712891 + 2 NA Intergenic MER57D|LTR|ERV1 -241003 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 276-447 chr8 73607143 73607400 + 2 NA intron (NM_001164384, intron 7 of 10) L1ME3E|LINE|L1 139569 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 259-203 chr2 101934166 101934398 + 2 NA Intergenic L1M4|LINE|L1 -49183 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 367-307 chr3 192297837 192298101 + 2 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) 59339 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 298-234 chr2 146485447 146485699 + 2 NA Intergenic Intergenic -101484 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 276-50 chr10 39016155 39016426 + 2 NA Intergenic ALR/Alpha|Satellite|centr 319694 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 223-23 chr1 195155319 195155468 + 2 NA Intergenic Intergenic 933322 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 252-339 chr5 98552866 98553106 + 2 NA Intergenic L1MEg|LINE|L1 -215646 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 260-231 chr2 216610040 216610247 + 2 NA Intergenic Intergenic -3205 NR_110392 101928232 Hs.694592 NR_110392 LINC01280 - long intergenic non-protein coding RNA 1280 ncRNA 225-63 chr11 99962012 99962213 + 2 NA intron (NM_001243270, intron 7 of 23) intron (NM_001243270, intron 7 of 23) 405967 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 203-40 chr11 103931176 103931307 + 2 NA intron (NM_025208, intron 5 of 6) MLT1D|LTR|ERVL-MaLR 81335 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 765-63 chr8 110170166 110170551 + 2 NA Intergenic L1MEg|LINE|L1 -194587 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 362-271 chr3 73850481 73850716 + 2 NA intron (NR_146637, intron 2 of 3) L1PA13|LINE|L1 41354 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 711-22 chr14 82026614 82027057 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -283697 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 321-78 chr10 111465892 111466156 + 2 NA Intergenic L2c|LINE|L2 351733 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 441-49 chr12 1422187 1422477 + 2 NA intron (NR_027948, intron 18 of 19) L1MA5|LINE|L1 -78159 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 473-29 chr10 51880658 51880966 + 2 NA intron (NM_001098512, intron 4 of 17) intron (NM_001098512, intron 4 of 17) -181217 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 306-20 chr1 88203419 88203592 + 2 NA Intergenic L2a|LINE|L2 -480639 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 166-122 chr9 37536907 37537058 + 2 NA intron (NM_012166, intron 3 of 10) MIR3|SINE|MIR 39398 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 178-57 chr18 68586051 68586170 + 2 NA Intergenic Intergenic 128998 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 412-173 chr2 152485315 152485647 + 2 NA intron (NM_052905, intron 1 of 25) AluJb|SINE|Alu 150307 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 414-346 chr9 15568992 15569305 + 2 NA intron (NM_001355547, intron 1 of 24) intron (NM_001355547, intron 1 of 24) 5170 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 238-135 chr17 10496475 10496662 + 2 NA intron (NM_005963, intron 33 of 39) intron (NM_005963, intron 33 of 39) 21974 NM_005963 4619 Hs.689619 NM_005963 ENSG00000109061 MYH1 HEL71|MYHSA1|MYHa|MyHC-2X/D|MyHC-2x myosin heavy chain 1 protein-coding 465-173 chr3 81078512 81078845 + 2 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 84810 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 318-243 chr2 13120545 13120743 + 2 NA Intergenic HAL1|LINE|L1 -113631 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 406-290 chr8 27540149 27540444 + 2 NA intron (NM_001979, intron 14 of 18) intron (NM_001979, intron 14 of 18) 49153 NM_001256484 2053 Hs.212088 NM_001979 ENSG00000120915 EPHX2 ABHD20|CEH|SEH epoxide hydrolase 2 protein-coding 465-302 chr8 128926119 128926510 + 2 NA Intergenic Intergenic 39687 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 448-178 chr4 45639633 45639987 + 2 NA Intergenic L1MC4|LINE|L1 484244 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 227-193 chr2 193969090 193969245 + 2 NA Intergenic L1MEc|LINE|L1 -375102 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 303-38 chr10 46078436 46078699 + 2 NA Intergenic Intergenic -30928 NR_126580 653268 Hs.447454 NM_001077685 AGAP7P AGAP-7|AGAP7|CTGLF4|bA109G10.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene pseudo 135-33 chr2 63548259 63548363 + 2 NA intron (NR_148705, intron 1 of 16) L1MEd|LINE|L1 40166 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 563-34 chr11 92975817 92976313 + 2 NA intron (NM_005959, intron 1 of 1) intron (NM_005959, intron 1 of 1) 6442 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 465-132 chr2 123153014 123153409 + 2 NA Intergenic Intergenic -79730 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 444-86 chr16 50964756 50965112 + 2 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -52824 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 456-276 chr6 54889733 54889998 + 2 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 43094 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 233-157 chr2 20487574 20487771 + 2 NA intron (NR_157978, intron 2 of 3) LTR84a|LTR|ERVL 13852 NR_157978 107985856 NR_157978 LOC107985856 - uncharacterized LOC107985856 ncRNA 242-234 chr3 39948721 39948954 + 2 NA intron (NM_001284424, intron 2 of 15) L1MEd|LINE|L1 139177 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 537-44 chr11 84427241 84427776 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -110169 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 533-176 chr5 35729059 35729468 + 2 NA intron (NM_024867, intron 21 of 36) LTR33|LTR|ERVL 111400 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 210-302 chr8 137706708 137706873 + 2 NA Intergenic Intergenic -293202 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 318-89 chr10 129373088 129373313 + 2 NA Intergenic L1MC2|LINE|L1 -94041 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 277-234 chr20 58724329 58724499 + 2 NA Intergenic L1MD3|LINE|L1 31614 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 477-104 chr15 64065686 64066056 + 2 NA Intergenic AluJr|SINE|Alu -19386 NM_014326 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 292-66 chr11 14489539 14489792 + 2 NA intron (NM_016451, intron 5 of 21) L1MB3|LINE|L1 10193 NM_016451 1315 Hs.339278 NM_016451 ENSG00000129083 COPB1 COPB coatomer protein complex subunit beta 1 protein-coding 211-100 chr15 94466688 94466868 + 2 NA intron (NM_018349, intron 19 of 21) (TTTATT)n|Simple_repeat|Simple_repeat 110848 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 313-6 chr1 44521350 44521647 + 2 NA intron (NM_001319957, intron 1 of 13) L2b|LINE|L2 -23995 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 575-118 chr3 72854454 72854840 + 2 NA Intergenic Intergenic -6202 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 749-8 chr1 219056875 219057607 + 2 NA intron (NR_031644, intron 6 of 6) L1MB1|LINE|L1 116547 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 347-305 chr3 68094389 68094585 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 90240 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 505-73 chr13 79718362 79718732 + 2 NA Intergenic L1PA15|LINE|L1 -85839 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 163-16 chr10 31234012 31234126 + 2 NA intron (NR_134478, intron 1 of 2) L1MA5|LINE|L1 46186 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 572-126 chr4 81328938 81329361 + 2 NA Intergenic L1MB7|LINE|L1 -113927 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 589-62 chr2 37654248 37654745 + 2 NA intron (NM_001270436, intron 1 of 1) L3|LINE|CR1 17703 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 327-461 chr7 80300496 80300801 + 2 NA Intergenic Intergenic 73791 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 285-72 chr11 103579397 103579660 + 2 NA Intergenic L2a|LINE|L2 -270378 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 406-91 chr14 90191419 90191701 + 2 NA Intergenic Intergenic -64993 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 375-143 chr15 57066034 57066270 + 2 NA intron (NM_207038, intron 4 of 19) intron (NM_207038, intron 4 of 19) 146707 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 246-105 chr13 69990537 69990696 + 2 NA intron (NM_020866, intron 1 of 10) L1PA13|LINE|L1 -116597 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 300-309 chr4 30546068 30546296 + 2 NA Intergenic Intergenic -174187 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 565-75 chr2 50452369 50452745 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -104801 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 257-162 chr19 15776610 15776789 + 2 NA intron (NR_033864, intron 1 of 9) MLT2B2|LTR|ERVL 3289 NR_033864 388514 Hs.438274 NR_033864 CYP4F24P - cytochrome P450 family 4 subfamily F member 24, pseudogene pseudo 322-436 chr5 105530243 105530419 + 2 NA Intergenic L1MEg|LINE|L1 430857 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 408-115 chr15 70959774 70960167 + 2 NA intron (NM_017691, intron 8 of 15) intron (NM_017691, intron 8 of 15) 67527 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 303-18 chr1 192714630 192714892 + 2 NA Intergenic L1M1|LINE|L1 -1567 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 123-27 chr2 42653821 42653902 + 2 NA intron (NM_001330443, intron 6 of 16) intron (NM_001330443, intron 6 of 16) 85229 NM_001330444 57504 Hs.435413 NM_020744 ENSG00000057935 MTA3 - metastasis associated 1 family member 3 protein-coding 371-415 chr9 96230122 96230343 + 2 NA Intergenic L1MB7|LINE|L1 -16231 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 226-122 chr17 11653459 11653630 + 2 NA intron (NM_001372, intron 14 of 68) intron (NM_001372, intron 14 of 68) 55074 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 340-272 chr2 108038117 108038332 + 2 NA Intergenic L1P3|LINE|L1 14531 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 286-448 chr8 72521364 72521569 + 2 NA Intergenic Intergenic -15759 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 651-80 chr22 38601808 38602388 + 2 NA intron (NM_001013647, intron 13 of 16) intron (NM_001013647, intron 13 of 16) 31598 NR_134627 105373031 Hs.144041 NR_134627 LOC105373031 - uncharacterized LOC105373031 ncRNA 347-343 chr4 47742054 47742335 + 2 NA intron (NM_006587, intron 5 of 21) L1MC3|LINE|L1 -89151 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 366-435 chr8 65478409 65478709 + 2 NA Intergenic L2a|LINE|L2 84107 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 253-206 chr2 187982709 187982928 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 304873 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 225-240 chr4 43216442 43216659 + 2 NA Intergenic Intergenic 275993 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 230-249 chr3 176253037 176253232 + 2 NA Intergenic Intergenic 8583 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 383-183 chr2 45871804 45872155 + 2 NA intron (NM_005400, intron 2 of 14) L2a|LINE|L2 220304 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 302-91 chr11 115354351 115354615 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 20906 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 126-27 chr17 33895946 33896028 + 2 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR 260819 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 466-115 chr19 51984473 51984842 + 2 NA intron (NM_021632, intron 1 of 4) L1ME3B|LINE|L1 2183 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 344-55 chr10 65994824 65995018 + 2 NA intron (NM_001127384, intron 15 of 17) L1MA4A|LINE|L1 423496 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 249-389 chr7 89281488 89281683 + 2 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -485848 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 307-458 chr7 78815507 78815687 + 2 NA intron (NM_001301128, intron 2 of 20) Tigger1|DNA|TcMar-Tigger -193391 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 324-380 chr4 36966225 36966441 + 2 NA Intergenic Intergenic -35446 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 215-90 chr14 84900945 84901153 + 2 NA Intergenic Intergenic -370883 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 233-27 chr10 8589729 8589878 + 2 NA intron (NR_134492, intron 1 of 1) intron (NR_134492, intron 1 of 1) 4588 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 202-235 chr7 23218954 23219097 + 2 NA Intergenic L2a|LINE|L2 -27750 NM_002510 10457 Hs.190495 NM_002510 ENSG00000136235 GPNMB HGFIN|NMB|PLCA3 glycoprotein nmb protein-coding 527-210 chr5 72574948 72575262 + 2 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 18028 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 577-156 chr5 125451996 125452373 + 2 NA Intergenic Intergenic -41077 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 415-130 chr2 120410396 120410687 + 2 NA Intergenic L1MC5a|LINE|L1 55808 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 220-115 chr15 47131425 47131619 + 2 NA Intergenic L1MEc|LINE|L1 -52567 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 412-151 chr2 34711495 34711854 + 2 NA intron (NR_126404, intron 1 of 2) intron (NR_126404, intron 1 of 2) 34117 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 273-178 chr18 2231120 2231308 + 2 NA Intergenic AluSp|SINE|Alu 340291 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 316-482 chr6 51353881 51354083 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie -267888 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 498-71 chr12 103816294 103816732 + 2 NA intron (NM_001031701, intron 1 of 13) Looper|DNA|PiggyBac 24721 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 588-32 chr13 59935898 59936311 + 2 NA intron (NM_001258369, intron 17 of 26) intron (NM_001258369, intron 17 of 26) -76614 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 215-84 chr14 56524632 56524789 + 2 NA intron (NR_135241, intron 1 of 1) MIR|SINE|MIR 10379 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 374-244 chr3 63721393 63721680 + 2 NA Intergenic L1PA11|LINE|L1 68861 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 218-288 chr6 66309856 66309990 + 2 NA Intergenic Intergenic 522044 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 484-195 chr4 122036442 122036717 + 2 NA Intergenic Intergenic -84519 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 157-68 chr2 164079504 164079582 + 2 NA Intergenic Intergenic -343535 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 433-30 chr10 90134548 90134833 + 2 NA Intergenic Intergenic -177317 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 346-262 chr2 160742985 160743203 + 2 NA Intergenic Intergenic -249287 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 345-320 chr21 24652506 24652736 + 2 NA Intergenic Intergenic -187929 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 148-68 chr4 157347653 157347784 + 2 NA intron (NM_001083620, intron 12 of 15) intron (NM_001083620, intron 12 of 15) 126990 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 122-43 chr5 19964128 19964195 + 2 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 24039 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 209-183 chr21 44393475 44393612 + 2 NA intron (NM_003307, intron 11 of 31) L1ME1|LINE|L1 -31986 NM_001320352 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 494-274 chr7 93225769 93226175 + 2 NA intron (NM_001288804, intron 1 of 10) intron (NM_001288804, intron 1 of 10) 497 NM_001288804 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 352-38 chr10 21935649 21935870 + 2 NA intron (NM_022365, intron 1 of 11) L1M4|LINE|L1 67971 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 202-25 chr10 20249031 20249196 + 2 NA intron (NM_032812, intron 13 of 13) intron (NM_032812, intron 13 of 13) -302857 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 178-100 chr4 83715235 83715368 + 2 NA Intergenic Intergenic 179193 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 493-35 chr10 80301349 80301776 + 2 NA Intergenic L1M4|LINE|L1 -11904 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 357-64 chr11 50613589 50613834 + 2 NA Intergenic ALR/Alpha|Satellite|centr 204564 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 272-312 chr4 85062635 85062889 + 2 NA Intergenic Intergenic 95278 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 371-172 chr2 85531168 85531442 + 2 NA Intergenic Intergenic 7581 NR_038942 100630918 Hs.66049 NR_038942 PARTICL PARTICLE promoter of MAT2A antisense radiation-induced circulating long non-coding RNA ncRNA 395-263 chr5 22736323 22736617 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 116874 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 313-265 chr2 100225816 100226076 + 2 NA intron (NR_103730, intron 1 of 2) intron (NR_103730, intron 1 of 2) 17692 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 402-306 chr6 145159339 145159711 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 527352 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 450-104 chr16 64709522 64709937 + 2 NA Intergenic Intergenic 412334 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 341-496 chr7 54106852 54107166 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -223688 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 451-236 chr8 114730662 114731066 + 2 NA Intergenic L2a|LINE|L2 937149 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 255-205 chr2 123449745 123449934 + 2 NA Intergenic Intergenic -376358 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 246-198 chr2 104263921 104264082 + 2 NA Intergenic L1MA9|LINE|L1 144331 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 358-144 chr16 35939219 35939439 + 2 NA Intergenic ALR/Alpha|Satellite|centr 192777 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 295-466 chr8 82450733 82450888 + 2 NA Intergenic L1PA15|LINE|L1 -461294 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 184-180 chr9 31760149 31760298 + 2 NA Intergenic L1MA4A|LINE|L1 -378733 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 351-342 chr4 48852001 48852177 + 2 NA TTS (NR_146806) TTS (NR_146806) 8114 NR_146806 100861517 Hs.661065 NR_146806 ENSG00000248256 OCIAD1-AS1 - OCIAD1 antisense RNA 1 ncRNA 417-203 chr4 94169122 94169424 + 2 NA intron (NR_125922, intron 1 of 8) intron (NR_125922, intron 1 of 8) 38283 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 301-194 chr2 16930890 16931144 + 2 NA Intergenic MER50|LTR|ERV1 -265183 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 189-39 chr12 42959952 42960110 + 2 NA Intergenic AmnSINE2|SINE|tRNA-Deu -195284 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 204-164 chr20 1806130 1806267 + 2 NA Intergenic MIRc|SINE|MIR -26452 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 368-262 chr20 13374207 13374532 + 2 NA Intergenic AluYk3|SINE|Alu -134682 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 706-77 chr9 83726781 83727432 + 2 NA Intergenic L1ME3C|LINE|L1 18775 NR_135840 105376114 Hs.9589 NR_135839 ENSG00000254473 LOC105376114 - uncharacterized LOC105376114 ncRNA 342-380 chr5 14128418 14128593 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -14837 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 256-231 chr20 12139955 12140143 + 2 NA Intergenic L1MA4A|LINE|L1 222156 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 333-92 chr11 79959676 79959880 + 2 NA Intergenic Intergenic -518748 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 449-82 chr14 81700639 81701021 + 2 NA Intergenic L1MEj|LINE|L1 42308 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 431-247 chr6 66333645 66334069 + 2 NA Intergenic AluY|SINE|Alu 545978 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 505-280 chr7 8459463 8459787 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 26016 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 368-98 chr12 16601314 16601536 + 2 NA intron (NM_001001395, intron 1 of 3) intron (NM_001001395, intron 1 of 3) 3954 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 348-51 chr10 48970801 48971125 + 2 NA intron (NM_020945, intron 57 of 61) intron (NM_020945, intron 57 of 61) 14624 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 240-57 chr10 70021814 70021989 + 2 NA Intergenic AluSp|SINE|Alu -30945 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 592-30 chr12 9851943 9852398 + 2 NA TTS (NM_005127) TTS (NM_005127) 17689 NM_005127 9976 Hs.85201 NM_005127 ENSG00000110852 CLEC2B AICL|CLECSF2|HP10085|IFNRG1 C-type lectin domain family 2 member B protein-coding 433-215 chr5 18245957 18246232 + 2 NA Intergenic L1M8|LINE|L1 438820 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 294-64 chr11 81300678 81300910 + 2 NA Intergenic Intergenic -537991 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 303-206 chr2 56419209 56419418 + 2 NA Intergenic Intergenic -233543 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 189-33 chr11 111170230 111170339 + 2 NA Intergenic Intergenic -72966 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 342-548 chr9 29460544 29460743 + 2 NA Intergenic L1PA13|LINE|L1 -247042 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 368-261 chr20 10069280 10069472 + 2 NA intron (NR_040710, intron 3 of 4) L1MA2|LINE|L1 34389 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 434-239 chr5 173695003 173695373 + 2 NA intron (NR_146727, intron 1 of 2) MIRb|SINE|MIR 5729 NR_146727 105377736 Hs.582570 NR_146727 ENSG00000253428 LINC01942 - long intergenic non-protein coding RNA 1942 ncRNA 180-35 chr12 20084231 20084360 + 2 NA intron (NR_040098, intron 2 of 2) L1MEg|LINE|L1 43606 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 337-69 chr10 99957214 99957475 + 2 NA non-coding (NR_024130, exon 5 of 5) non-coding (NR_024130, exon 5 of 5) -26437 NM_001318326 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 479-7 chr1 113267502 113267928 + 2 NA Intergenic L2a|LINE|L2 -61462 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 293-238 chr21 24712189 24712456 + 2 NA Intergenic Intergenic -128228 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 376-417 chr8 138365234 138365469 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 131910 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 208-229 chr6 33902881 33903057 + 2 NA Intergenic Intergenic 3834 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 198-60 chr13 105620471 105620601 + 2 NA Intergenic Intergenic -86294 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 280-382 chr7 53368228 53368455 + 2 NA Intergenic Intergenic 332708 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 341-571 chrUn_KI270590v1 2948 3190 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 209-204 chr3 106934963 106935109 + 2 NA Intergenic L2a|LINE|L2 305602 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 409-110 chr17 65861536 65861815 + 2 NA intron (NM_001353129, intron 20 of 26) L1ME3F|LINE|L1 -35132 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 457-203 chr5 86632797 86633084 + 2 NA Intergenic Intergenic 12434 NR_145802 109623460 NR_037402 SNORD138 MIR3607|mir-3607 small nucleolar RNA, C/D box 138 snoRNA 260-386 chr6 123755113 123755352 + 2 NA Intergenic L1MD2|LINE|L1 -48614 NM_001300738 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 539-112 chr2 80965887 80966209 + 2 NA Intergenic Intergenic 500898 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 283-177 chr17 29997341 29997533 + 2 NA intron (NR_026738, intron 6 of 15) intron (NR_026738, intron 6 of 15) 55803 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 235-105 chr14 77857956 77858148 + 2 NA intron (NM_001366490, intron 4 of 11) intron (NM_001366490, intron 4 of 11) 57943 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 592-163 chr7 109025139 109025721 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -140843 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 170-51 chr14 98807085 98807222 + 2 NA Intergenic Intergenic 95540 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 654-88 chr4 102286557 102287056 + 2 NA intron (NM_022154, intron 5 of 7) intron (NM_022154, intron 5 of 7) 37506 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 472-352 chrX 71507217 71507567 + 2 NA intron (NR_104396, intron 1 of 2) AluJr|SINE|Alu 14942 NR_104396 6872 Hs.158560 NM_004606 ENSG00000147133 TAF1 BA2R|CCG1|CCGS|DYT3|DYT3/TAF1|KAT4|MRXS33|N-TAF1|NSCL2|OF|P250|TAF(II)250|TAF2A|TAFII-250|TAFII250|XDP TATA-box binding protein associated factor 1 protein-coding 443-310 chr9 125793423 125793846 + 2 NA intron (NR_024122, intron 2 of 7) AluSx1|SINE|Alu 45451 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 283-394 chr6 70708660 70708865 + 2 NA intron (NM_001281440, intron 1 of 10) L1MA9|LINE|L1 40232 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 521-18 chr1 222087921 222088298 + 2 NA Intergenic MIRb|SINE|MIR -109589 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 215-183 chr22 26432385 26432540 + 2 NA intron (NM_020437, intron 1 of 3) intron (NM_020437, intron 1 of 3) 3202 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 290-162 chr16 74204619 74204853 + 2 NA intron (NR_104657, intron 3 of 3) L1ME3G|LINE|L1 10785 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 392-300 chr7 28559939 28560181 + 2 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) 124445 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 375-197 chr2 19263982 19264187 + 2 NA Intergenic Intergenic -84345 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 320-246 chr2 2832656 2832963 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 293217 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 430-267 chr6 100404235 100404633 + 2 NA intron (NM_005068, intron 9 of 10) UCON11|DNA|TcMar-Tigger 59241 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 533-246 chr9 79337830 79338347 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -192422 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 393-79 chr13 42750370 42750757 + 2 NA Intergenic Intergenic -30987 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 342-573 chrX 117569520 117569712 + 2 NA Intergenic L2a|LINE|L2 404122 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 237-349 chr7 25833994 25834163 + 2 NA Intergenic Arthur1A|DNA|hAT-Tip100 -43959 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 560-151 chr6 65441028 65441394 + 2 NA intron (NM_198283, intron 4 of 9) intron (NM_198283, intron 4 of 9) 138593 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 215-336 chr9 70842585 70842793 + 2 NA intron (NM_001366143, intron 5 of 25) intron (NM_001366143, intron 5 of 25) 26363 NM_206944 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 260-97 chr12 23548758 23548968 + 2 NA intron (NM_001261414, intron 13 of 16) intron (NM_001261414, intron 13 of 16) 35723 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 399-308 chr8 90386515 90386827 + 2 NA intron (NR_051989, intron 3 of 3) AluJr|SINE|Alu 165183 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 346-153 chr15 45768498 45768705 + 2 NA intron (NR_135680, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL 63406 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 503-129 chr18 9983418 9983847 + 2 NA Intergenic L1MD|LINE|L1 69616 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 275-284 chr5 28884264 28884456 + 2 NA Intergenic L1PB3|LINE|L1 -42510 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 577-31 chr10 70000787 70001169 + 2 NA Intergenic L1MEg|LINE|L1 -51868 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 315-480 chr8 86631479 86631734 + 2 NA intron (NM_019098, intron 11 of 17) intron (NM_019098, intron 11 of 17) 112069 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 310-354 chr3 189733070 189733279 + 2 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) -56485 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 243-174 chr18 3926462 3926623 + 2 NA intron (NM_001242761, intron 3 of 11) (AT)n|Simple_repeat|Simple_repeat -35811 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 322-543 chr8 118378465 118378765 + 2 NA 3' UTR (NM_207506, exon 4 of 4) 3' UTR (NM_207506, exon 4 of 4) -242386 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 371-81 chr12 34541588 34541830 + 2 NA Intergenic ALR/Alpha|Satellite|centr 519213 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 485-308 chr9 71045925 71046245 + 2 NA intron (NM_001366143, intron 1 of 25) AluSg7|SINE|Alu 75536 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 240-158 chr15 63490280 63490438 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -14152 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 211-236 chr5 53435520 53435676 + 2 NA Intergenic Intergenic -45031 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 480-307 chr8 138852974 138853373 + 2 NA intron (NM_152888, intron 3 of 64) AluSz|SINE|Alu 60868 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 680-126 chrX 39069149 39069824 + 2 NA Intergenic LTR12D|LTR|ERV1 257876 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 524-4 chr1 49354204 49354536 + 2 NA intron (NR_136623, intron 2 of 12) L2|LINE|L2 96959 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 222-242 chr3 100030180 100030387 + 2 NA intron (NM_001042459, intron 1 of 4) L3|LINE|CR1 -65885 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 278-148 chr16 78254478 78254688 + 2 NA intron (NM_001291997, intron 4 of 7) AluJb|SINE|Alu 154929 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 783-68 chr6 140130249 140130818 + 2 NA Intergenic L1M2|LINE|L1 -74719 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 294-513 chrX 45234099 45234277 + 2 NA Intergenic LTR16C|LTR|ERVL -33312 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 849-14 chr15 71161721 71162250 + 2 NA intron (NM_024817, intron 2 of 16) L1MA6|LINE|L1 20536 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 390-58 chr11 40446287 40446530 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -153278 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 467-237 chr5 161818805 161819085 + 2 NA Intergenic Intergenic -28246 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 405-181 chr20 42035305 42035660 + 2 NA Intergenic Intergenic -417105 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 294-273 chr22 16849383 16849669 + 2 NA Intergenic MER101-int|LTR|ERV1 22052 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 365-382 chr7 87066399 87066730 + 2 NA Intergenic Intergenic -6910 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 357-295 chr3 192695102 192695357 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 32312 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 377-272 chr3 110007741 110007941 + 2 NA Intergenic Intergenic 405013 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 264-180 chr18 73057874 73058096 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 188945 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 490-262 chr7 40033097 40033440 + 2 NA intron (NM_003718, intron 5 of 13) L1MC2|LINE|L1 82908 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 303-289 chr3 101026467 101026719 + 2 NA Intergenic L1PBa|LINE|L1 -33103 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 371-370 chr7 156103372 156103636 + 2 NA Intergenic Intergenic 140872 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 230-381 chr8 118659063 118659252 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -37194 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 373-208 chr2 136526920 136527204 + 2 NA Intergenic Intergenic -238483 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 163-20 chr10 89059313 89059420 + 2 NA Intergenic Intergenic -3970 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 656-62 chr2 118939114 118939687 + 2 NA Intergenic MIRc|SINE|MIR -2769 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 403-85 chr13 55294010 55294409 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 119755 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 504-103 chr18 9165020 9165375 + 2 NA intron (NM_001204056, intron 1 of 11) L1PA11|LINE|L1 27634 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 290-291 chr3 133225586 133225825 + 2 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 31416 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 314-403 chr4 5435702 5435886 + 2 NA intron (NM_001306082, intron 7 of 12) L2c|LINE|L2 -88775 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 347-244 chr2 135392535 135392815 + 2 NA intron (NM_001286569, intron 2 of 21) AluSx|SINE|Alu 137910 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 250-285 chr3 109586058 109586225 + 2 NA Intergenic Intergenic -16687 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 316-497 chr6 147722773 147722997 + 2 NA Intergenic L1MCc|LINE|L1 214195 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 370-267 chr20 13859084 13859291 + 2 NA intron (NM_001363752, intron 15 of 16) intron (NM_001363752, intron 15 of 16) 74159 NR_147978 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 434-212 chr4 81573508 81573858 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -101776 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 222-142 chr18 5921617 5921832 + 2 NA Intergenic LTR85a|LTR|Gypsy? -25770 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 336-320 chr20 23509369 23509571 + 2 NA Intergenic Intergenic -9676 NR_001279 164380 Hs.400007 NR_001279 ENSG00000204663 CST13P CSTT|CTES6 cystatin 13, pseudogene pseudo 303-492 chr9 37734800 37735070 + 2 NA intron (NM_001371225, intron 12 of 15) intron (NM_001371225, intron 12 of 15) -18868 NM_001286952 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 165-136 chr8 144915074 144915200 + 2 NA Intergenic LTR49-int|LTR|ERV1 -12960 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 325-339 chr3 23136340 23136561 + 2 NA Intergenic Intergenic 66128 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 177-133 chr5 137688985 137689101 + 2 NA intron (NM_017415, intron 5 of 14) intron (NM_017415, intron 5 of 14) 17384 NM_001257195 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 302-388 chr6 74290640 74290846 + 2 NA intron (NR_110856, intron 1 of 3) L1MA2|LINE|L1 221292 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 298-374 chr5 101344907 101345180 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -441761 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 300-287 chr3 105259463 105259751 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -107106 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 331-555 chr9 72183260 72183493 + 2 NA intron (NM_001351571, intron 1 of 13) intron (NM_001351571, intron 1 of 13) 33936 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 255-397 chr7 98630936 98631138 + 2 NA Intergenic Intergenic 13752 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 593-14 chr10 42091285 42091855 + 2 NA Intergenic Intergenic 276475 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 398-374 chr8 138371089 138371329 + 2 NA intron (NM_001362965, intron 1 of 19) MIRb|SINE|MIR 126052 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 351-68 chr11 40432425 40432724 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -139444 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 307-143 chr14 62052375 62052642 + 2 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) -64849 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 242-228 chr3 4123481 4123646 + 2 NA Intergenic Intergenic -179741 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 316-195 chr16 20887182 20887376 + 2 NA intron (NM_173475, intron 1 of 2) AluSx1|SINE|Alu -12603 NM_001369631 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 445-213 chr5 7438453 7438850 + 2 NA intron (NM_020546, intron 2 of 24) MIRc|SINE|MIR 42513 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 209-157 chr2 108960717 108960907 + 2 NA intron (NM_022336, intron 1 of 11) L1ME4a|LINE|L1 28408 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 325-97 chr11 27100927 27101154 + 2 NA intron (NM_003986, intron 5 of 8) MIRb|SINE|MIR 60225 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 519-20 chr10 16246062 16246546 + 2 NA Intergenic AluSq2|SINE|Alu -190639 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 228-238 chr4 38677720 38677851 + 2 NA intron (NM_016531, intron 1 of 5) intron (NM_016531, intron 1 of 5) -13157 NR_026804 79667 Hs.29725 NM_024614 ENSG00000231160 KLF3-AS1 - KLF3 antisense RNA 1 ncRNA 396-96 chr13 43995446 43995785 + 2 NA Intergenic MER50|LTR|ERV1 -26720 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 395-12 chr1 99250123 99250348 + 2 NA Intergenic Intergenic -14057 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 595-16 chr10 52146074 52146530 + 2 NA intron (NM_001098512, intron 8 of 17) L1ME4a|LINE|L1 167826 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 592-188 chrX 67053764 67054256 + 2 NA Intergenic LTR33|LTR|ERVL -414712 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 579-133 chr5 98301323 98301724 + 2 NA Intergenic Intergenic -140284 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 311-360 chr3 192908006 192908265 + 2 NA intron (NM_178496, intron 1 of 1) intron (NM_178496, intron 1 of 1) 9721 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 222-348 chr7 83136230 83136411 + 2 NA intron (NM_033026, intron 2 of 24) intron (NM_033026, intron 2 of 24) 26564 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 324-523 chr8 64970364 64970653 + 2 NA Intergenic L1M5|LINE|L1 -171771 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 579-174 chr8 120525465 120525978 + 2 NA Intergenic Intergenic 80302 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 634-23 chr10 105781981 105782511 + 2 NA intron (NR_120625, intron 3 of 3) intron (NR_120625, intron 3 of 3) 38087 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 518-30 chr10 56845848 56846302 + 2 NA Intergenic Intergenic 458484 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 240-186 chr18 2994553 2994775 + 2 NA intron (NM_014646, intron 1 of 19) MER20|DNA|hAT-Charlie 17283 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 467-138 chr2 126817891 126818235 + 2 NA Intergenic L1MB4|LINE|L1 -80827 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 533-239 chr8 137429215 137429596 + 2 NA Intergenic Intergenic -15817 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 568-27 chr11 55211734 55212100 + 2 NA Intergenic ALR/Alpha|Satellite|centr -50238 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 235-316 chr7 9914363 9914542 + 2 NA Intergenic L1MB3|LINE|L1 280182 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 524-128 chr2 217135508 217135887 + 2 NA Intergenic L1MB8|LINE|L1 -147036 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 184-56 chr14 70834477 70834645 + 2 NA Intergenic Intergenic -25048 NM_033141 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 310-52 chr10 85711668 85711897 + 2 NA intron (NM_017551, intron 12 of 15) intron (NM_017551, intron 12 of 15) 134051 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 478-109 chr16 78040725 78041101 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 18365 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 326-151 chr14 65279666 65279969 + 2 NA Intergenic CpG 55366 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 288-51 chr10 59378269 59378457 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -15182 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 199-155 chr3 3059689 3059832 + 2 NA intron (NR_046554, intron 1 of 3) MLT1K|LTR|ERVL-MaLR 1385 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 377-245 chr20 16711445 16711759 + 2 NA Intergenic Intergenic -18424 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 129-6 chr10 76315111 76315181 + 2 NA intron (NM_001305581, intron 5 of 6) MIR|SINE|MIR 532385 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 359-362 chr4 64790682 64790960 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 213679 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 262-126 chr14 58045667 58045868 + 2 NA intron (NM_001001872, intron 5 of 7) MLT1C|LTR|ERVL-MaLR 106446 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 336-571 chr8 139642002 139642211 + 2 NA intron (NR_104210, intron 1 of 3) L3|LINE|CR1 61017 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 306-217 chr19 51888999 51889238 + 2 NA TTS (NM_023074) TTS (NM_023074) 1093 NR_110733 101928571 Hs.553920 NR_110733 ENSG00000268095 ZNF649-AS1 - ZNF649 antisense RNA 1 ncRNA 277-352 chr6 67966003 67966263 + 2 NA Intergenic Intergenic -89218 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 346-435 chr6 110594365 110594583 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -117861 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 442-29 chr10 65344760 65345134 + 2 NA Intergenic Intergenic -226478 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 295-36 chr1 248756111 248756287 + 2 NA promoter-TSS (NM_001291283) promoter-TSS (NM_001291283) -412 NM_001291283 646627 Hs.146268 NM_001085474 ENSG00000259823 LYPD8 - LY6/PLAUR domain containing 8 protein-coding 251-49 chr11 34813364 34813524 + 2 NA Intergenic L1M3f|LINE|L1 -102686 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 335-577 chrX 39783572 39783889 + 2 NA Intergenic AluJr|SINE|Alu -53831 NR_039763 100616251 NR_039763 ENSG00000263972 MIR1587 - microRNA 1587 ncRNA 128-60 chr6 96216202 96216323 + 2 NA TTS (NM_006581) TTS (NM_006581) 200288 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 268-191 chr2 51311845 51312032 + 2 NA intron (NR_135237, intron 2 of 10) L1M4b|LINE|L1 279337 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 409-237 chr5 12795607 12795948 + 2 NA intron (NR_033383, intron 3 of 3) intron (NR_033383, intron 3 of 3) 127918 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 421-58 chr12 117094434 117094730 + 2 NA intron (NR_031766, intron 1 of 7) L2c|LINE|L2 4834 NM_017899 54997 Hs.525709 NM_017899 ENSG00000088992 TESC CHP3|TSC tescalcin protein-coding 229-204 chr2 157603759 157603906 + 2 NA intron (NM_145259, intron 1 of 8) intron (NM_145259, intron 1 of 8) -6272 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 547-200 chr6 45169470 45169831 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 28120 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 295-71 chr11 50514224 50514415 + 2 NA Intergenic MER9a2|LTR|ERVK 105172 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 529-172 chr5 46152578 46152996 + 2 NA Intergenic ALR/Alpha|Satellite|centr -456407 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 395-186 chr2 156170842 156171087 + 2 NA intron (NR_110250, intron 1 of 3) L2b|LINE|L2 83967 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 353-218 chr18 78059154 78059459 + 2 NA Intergenic Intergenic -65579 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 340-136 chr13 98732636 98732886 + 2 NA intron (NM_005073, intron 1 of 22) intron (NM_005073, intron 1 of 22) 19911 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 326-375 chr4 62937609 62937811 + 2 NA Intergenic Intergenic -775945 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 210-183 chr3 178982420 178982577 + 2 NA Intergenic Intergenic 89311 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 389-312 chr6 40591920 40592302 + 2 NA Intergenic MIRc|SINE|MIR -4747 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 341-83 chr11 54782100 54782387 + 2 NA Intergenic MER11C|LTR|ERVK 75411 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 327-381 chr5 1993063 1993356 + 2 NA Intergenic L1M5|LINE|L1 105878 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 312-217 chr19 28106403 28106641 + 2 NA Intergenic L1PB3|LINE|L1 -312582 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 414-255 chr5 8477710 8478065 + 2 NA Intergenic Intergenic 16962 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 328-13 chr1 77363396 77363603 + 2 NA intron (NM_012093, intron 6 of 13) L2a|LINE|L2 80412 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 361-294 chr3 108391645 108391867 + 2 NA intron (NM_014981, intron 38 of 41) intron (NM_014981, intron 38 of 41) 79971 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 314-539 chr7 64092702 64092860 + 2 NA Intergenic L1PA6|LINE|L1 47347 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 257-112 chr14 68533682 68533869 + 2 NA intron (NM_001321818, intron 10 of 10) L2|LINE|L2 95012 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 266-43 chr10 65941538 65941763 + 2 NA intron (NM_001127384, intron 17 of 17) intron (NM_001127384, intron 17 of 17) 370225 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 316-557 chr8 101813451 101813638 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -22575 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 739-71 chr8 123883510 123883913 + 2 NA intron (NM_001039112, intron 1 of 40) MLT1A1|LTR|ERVL-MaLR 31724 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 522-85 chr14 85036445 85036801 + 2 NA Intergenic L1MC3|LINE|L1 -235309 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 755-15 chr11 22297496 22297966 + 2 NA Intergenic L1MC5a|LINE|L1 -40650 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 335-305 chr20 60766233 60766498 + 2 NA Intergenic Intergenic 201803 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 125-33 chr21 23627579 23627670 + 2 NA Intergenic L1ME1|LINE|L1 -242789 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 265-167 chr2 7251444 7251681 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -169699 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 447-301 chrX 40752251 40752549 + 2 NA Intergenic L1MA7|LINE|L1 -16858 NM_004229 9282 Hs.407604 NM_004229 ENSG00000180182 MED14 CRSP150|CRSP2|CSRP|CXorf4|DRIP150|EXLM1|RGR1|TRAP170 mediator complex subunit 14 protein-coding 473-225 chr5 122020800 122021190 + 2 NA intron (NM_152546, intron 6 of 7) Tigger15a|DNA|TcMar-Tigger 56179 NM_001317073 4015 Hs.102267 NM_002317 ENSG00000113083 LOX AAT10 lysyl oxidase protein-coding 634-11 chr1 239675974 239676548 + 2 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 42858 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 394-26 chr1 217762298 217762557 + 2 NA intron (NM_138796, intron 6 of 10) intron (NM_138796, intron 6 of 10) 22693 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 133-86 chr9 118760670 118760788 + 2 NA Intergenic L1MCa|LINE|L1 81058 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 183-68 chr2 21859165 21859331 + 2 NA Intergenic Intergenic -148596 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 312-496 chr7 109259548 109259792 + 2 NA Intergenic Intergenic -375083 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 230-389 chr8 130819145 130819353 + 2 NA intron (NM_001115, intron 13 of 17) intron (NM_001115, intron 13 of 17) 221660 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 337-275 chr2 139961293 139961547 + 2 NA Intergenic Intergenic 625265 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 354-143 chr14 72360735 72360942 + 2 NA intron (NM_001370288, intron 3 of 16) THE1D|LTR|ERVL-MaLR -155982 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 186-64 chr18 8086861 8087019 + 2 NA intron (NM_002845, intron 10 of 30) intron (NM_002845, intron 10 of 30) 280094 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 201-31 chr10 69795433 69795604 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -6388 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 251-45 chr10 126616247 126616432 + 2 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) 54171 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 236-59 chr10 130803586 130803765 + 2 NA Intergenic Intergenic 158993 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 436-321 chr8 137999690 138000081 + 2 NA intron (NR_161374, intron 2 of 7) L1MEc|LINE|L1 83660 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 221-99 chr16 10733819 10733945 + 2 NA Intergenic L1ME1|LINE|L1 -9904 NM_001278506 4682 Hs.81469 NM_002484 ENSG00000103274 NUBP1 CIAO5|NBP|NBP1|NBP35 nucleotide binding protein 1 protein-coding 471-54 chr11 97244486 97244897 + 2 NA Intergenic L1PB4|LINE|L1 736266 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 558-24 chr10 84294336 84294729 + 2 NA non-coding (NR_038220, exon 6 of 6) non-coding (NR_038220, exon 6 of 6) 14552 NR_038220 170425 Hs.434131 NR_038220 ENSG00000229404 LINC00858 CRCAL-2 long intergenic non-protein coding RNA 858 ncRNA 351-494 chr8 114057214 114057445 + 2 NA Intergenic Intergenic -620390 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 425-291 chr7 121512834 121513245 + 2 NA Intergenic L2a|LINE|L2 -116671 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 402-295 chr6 53609116 53609486 + 2 NA Intergenic Intergenic -19079 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 753-35 chr2 107643073 107643658 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -110747 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 285-75 chr11 129149881 129150095 + 2 NA intron (NM_001142685, intron 2 of 21) L1PB2|LINE|L1 42210 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 237-141 chr17 40849328 40849483 + 2 NA Intergenic Intergenic 17818 NM_000223 3859 Hs.66739 NM_000223 ENSG00000187242 KRT12 K12 keratin 12 protein-coding 455-251 chr6 141830517 141830785 + 2 NA Intergenic LOR1a|LTR|ERV1 258148 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 354-89 chr11 108984125 108984454 + 2 NA Intergenic Intergenic 319220 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 335-563 chr9 29883037 29883243 + 2 NA Intergenic LTR24B|LTR|ERV1 525314 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 304-243 chr2 31711841 31712014 + 2 NA Intergenic L1M1|LINE|L1 92053 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 189-43 chr12 100424742 100424900 + 2 NA Intergenic MIRb|SINE|MIR -49045 NR_135146 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 336-129 chr12 41858399 41858624 + 2 NA Intergenic Intergenic 94322 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 316-592 chr9 105143678 105143913 + 2 NA Intergenic Intergenic -100810 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 344-509 chr8 133850753 133851079 + 2 NA Intergenic L2a|LINE|L2 -35580 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 419-142 chr2 77001076 77001449 + 2 NA intron (NR_110284, intron 3 of 3) intron (NR_110284, intron 3 of 3) 15297 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 465-109 chr17 77715221 77715582 + 2 NA Intergenic L1ME1|LINE|L1 13158 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 397-161 chr2 100826752 100827107 + 2 NA intron (NM_002518, intron 1 of 20) L1ME4b|LINE|L1 6790 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 376-271 chr4 38829147 38829366 + 2 NA exon (NM_006068, exon 2 of 2) exon (NM_006068, exon 2 of 2) -24465 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 306-14 chr1 82243728 82243887 + 2 NA Intergenic Intergenic 441354 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 177-12 chr1 208196322 208196430 + 2 NA intron (NM_025179, intron 3 of 31) intron (NM_025179, intron 3 of 31) 48008 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 307-13 chr1 88579652 88579895 + 2 NA intron (NR_110682, intron 1 of 3) LTR16A|LTR|ERVL -104371 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 225-179 chr20 41764736 41764904 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -146443 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 296-331 chr4 33716862 33717118 + 2 NA Intergenic Intergenic 322903 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 293-477 chr9 103889973 103890161 + 2 NA Intergenic L1MA4|LINE|L1 -109642 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 209-217 chr4 23198326 23198486 + 2 NA Intergenic Intergenic 484317 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 345-236 chr19 34010459 34010647 + 2 NA Intergenic HAL1|LINE|L1 -161951 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 273-21 chr1 151967882 151968091 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 25873 NM_002966 6281 Hs.143873 NM_002966 ENSG00000197747 S100A10 42C|ANX2L|ANX2LG|CAL1L|CLP11|Ca[1]|GP11|P11|p10 S100 calcium binding protein A10 protein-coding 314-56 chr10 15963510 15963710 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -103077 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 190-13 chr10 23839451 23839599 + 2 NA intron (NM_001098500, intron 1 of 18) L1M6|LINE|L1 144798 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 214-363 chrX 95454965 95455123 + 2 NA Intergenic Intergenic -391818 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 358-72 chr11 81356482 81356765 + 2 NA Intergenic Intergenic 534213 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 272-173 chr2 19095434 19095667 + 2 NA Intergenic AluSz|SINE|Alu -68579 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 339-442 chr5 24629389 24629688 + 2 NA intron (NM_001362460, intron 1 of 9) THE1C|LTR|ERVL-MaLR 15440 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 555-72 chr17 64290581 64290982 + 2 NA Intergenic AluSz|SINE|Alu -27521 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 562-205 chr7 81866268 81866818 + 2 NA Intergenic Intergenic -96496 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 536-203 chr6 133368464 133368848 + 2 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 127157 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 249-341 chr5 114727003 114727170 + 2 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 46327 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 337-201 chr17 41136995 41137180 + 2 NA intron (NM_001277332, intron 3 of 5) L1MEg|LINE|L1 3400 NM_030976 81871 Hs.307014 NM_030976 ENSG00000198090 KRTAP4-6 KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 keratin associated protein 4-6 protein-coding 412-50 chr11 37657952 37658236 + 2 NA Intergenic Intergenic -280507 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 354-283 chr3 9567787 9568058 + 2 NA Intergenic L1MB4|LINE|L1 -14100 NM_198560 375323 Hs.56782 NM_198560 ENSG00000156959 LHFPL4 GARLH4 LHFPL tetraspan subfamily member 4 protein-coding 193-24 chr10 4616241 4616378 + 2 NA Intergenic MER21B|LTR|ERVL -39847 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 346-89 chr12 11740768 11740992 + 2 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 91026 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 214-266 chr5 104958346 104958518 + 2 NA Intergenic L1M4b|LINE|L1 -141042 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 196-267 chr9 28536084 28536205 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 183161 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 434-243 chr6 48202830 48203157 + 2 NA Intergenic MER67D|LTR|ERV1 -134304 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 174-115 chr5 123129781 123129905 + 2 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -39527 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 544-92 chr17 72197157 72197506 + 2 NA Intergenic Intergenic 76311 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 509-69 chr14 21130531 21131008 + 2 NA Intergenic L1MA8|LINE|L1 25294 NM_001004731 390445 Hs.553768 NM_001004731 ENSG00000169327 OR5AU1 OR14-38 olfactory receptor family 5 subfamily AU member 1 protein-coding 332-509 chr8 15492822 15493073 + 2 NA Intergenic AluJo|SINE|Alu -47140 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 308-82 chr11 38140981 38141206 + 2 NA Intergenic L1MA10|LINE|L1 202492 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 313-25 chr1 181320616 181320789 + 2 NA Intergenic Intergenic 84314 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 226-69 chr12 27513969 27514153 + 2 NA Intergenic Intergenic -10145 NM_177444 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 820-34 chr3 15673279 15673889 + 2 NA intron (NM_001349280, intron 26 of 26) L2a|LINE|L2 23787 NR_036085 100422990 NR_036085 ENSG00000264354 MIR3134 - microRNA 3134 ncRNA 381-138 chr17 54746912 54747260 + 2 NA Intergenic L1MA3|LINE|L1 -153605 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 371-291 chr4 134232339 134232587 + 2 NA Intergenic Intergenic -30674 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 348-98 chr11 109256681 109256891 + 2 NA Intergenic L1ME3B|LINE|L1 -165404 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 287-390 chr7 134050231 134050426 + 2 NA intron (NM_021807, intron 17 of 17) MIR|SINE|MIR -77012 NM_001365700 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 415-107 chr18 27934135 27934440 + 2 NA Intergenic Intergenic 102354 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 389-190 chr2 168354947 168355151 + 2 NA Intergenic LTR33|LTR|ERVL -101223 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 427-280 chr9 86259530 86259905 + 2 NA promoter-TSS (NM_001276366) promoter-TSS (NM_001276366) -60 NM_001276367 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 268-352 chr6 119451603 119451789 + 2 NA TTS (NR_046100) TTS (NR_046100) 39606 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 455-120 chr2 49592176 49592539 + 2 NA Intergenic Intergenic 381846 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 298-71 chr11 42004459 42004632 + 2 NA intron (NR_135065, intron 9 of 9) intron (NR_135065, intron 9 of 9) 80913 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 207-277 chr7 125377137 125377301 + 2 NA intron (NR_110188, intron 8 of 8) intron (NR_110188, intron 8 of 8) -112928 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 384-15 chr1 115523760 115523968 + 2 NA Intergenic Intergenic -118106 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 404-217 chr3 122036079 122036289 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -13937 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 323-469 chr6 120949024 120949198 + 2 NA Intergenic L2a|LINE|L2 385369 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 705-108 chrX 126708403 126708966 + 2 NA Intergenic Intergenic -111045 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 320-476 chr6 8986032 8986264 + 2 NA Intergenic L1MB1|LINE|L1 333939 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 282-260 chr20 9622200 9622405 + 2 NA intron (NM_020341, intron 4 of 10) MER3|DNA|hAT-Charlie -107304 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 133-84 chr9 13920773 13920873 + 2 NA Intergenic Intergenic -7148 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 273-234 chr2 132508783 132508953 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 75157 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 235-38 chr10 50907307 50907469 + 2 NA Intergenic Intergenic -21713 NM_138933 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 754-43 chr2 79439958 79440498 + 2 NA Intergenic Intergenic 60616 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 304-82 chr11 79742004 79742273 + 2 NA Intergenic Intergenic -301108 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 260-369 chr6 40705864 40706052 + 2 NA Intergenic Intergenic -118594 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 314-584 chr8 123884652 123884898 + 2 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 32788 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 343-309 chr20 62249237 62249569 + 2 NA intron (NM_001363878, intron 1 of 14) intron (NM_001363878, intron 1 of 14) 10882 NM_014835 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 474-258 chr7 7941496 7941953 + 2 NA Intergenic L2|LINE|L2 27028 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 563-59 chr15 82158724 82159267 + 2 NA intron (NM_001040610, intron 14 of 17) MIR|SINE|MIR 70401 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 484-107 chr19 48529042 48529467 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -16065 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 573-104 chr20 31273132 31273606 + 2 NA Intergenic L1M2|LINE|L1 15705 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 214-6 chr1 36023699 36023870 + 2 NA intron (NM_177422, intron 9 of 16) intron (NM_177422, intron 9 of 16) -60310 NM_014466 27285 Hs.127111 NM_014466 ENSG00000092850 TEKT2 TEKTB1|TEKTIN-T|h-tektin-t tektin 2 protein-coding 390-310 chr5 152836802 152837176 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 135360 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 319-482 chr6 161995411 161995647 + 2 NA intron (NM_013988, intron 2 of 8) L1M2|LINE|L1 524552 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 390-76 chr12 92500488 92500824 + 2 NA Intergenic L2c|LINE|L2 33977 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 194-54 chr14 51113079 51113205 + 2 NA Intergenic Intergenic -17438 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 157-3 chr1 49886115 49886228 + 2 NA intron (NM_001323575, intron 1 of 12) intron (NM_001323575, intron 1 of 12) 137783 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 309-106 chr12 47954802 47954959 + 2 NA Intergenic Intergenic -8667 NM_001143843 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 266-165 chr2 2596728 2596904 + 2 NA Intergenic L1M1|LINE|L1 -265541 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 334-370 chr3 189717440 189717692 + 2 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) -72093 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 241-172 chr2 3720768 3720920 + 2 NA intron (NM_001287444, intron 2 of 10) L1M5|LINE|L1 14002 NM_001365580 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 319-343 chr3 132984232 132984475 + 2 NA Intergenic Intergenic -53935 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 529-174 chr5 79811546 79811937 + 2 NA Intergenic Intergenic 121905 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 315-380 chr5 55244826 55245015 + 2 NA Intergenic L1ME4b|LINE|L1 -11203 NR_125347 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 764-34 chr2 9783600 9784345 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -59470 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 176-36 chr15 98118076 98118169 + 2 NA Intergenic Intergenic -29369 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 571-142 chr5 144034382 144034860 + 2 NA Intergenic L2b|LINE|L2 136038 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 337-242 chr2 34977745 34978048 + 2 NA Intergenic L1MC5a|LINE|L1 300339 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 257-252 chr22 22870518 22870716 + 2 NA Intergenic Intergenic -15650 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 295-316 chr3 187551943 187552134 + 2 NA Intergenic Intergenic 104992 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 286-362 chr5 96295512 96295758 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 136524 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 188-27 chr11 78487701 78487866 + 2 NA intron (NM_024678, intron 7 of 13) L1MEf|LINE|L1 -45393 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 368-276 chr22 34003276 34003467 + 2 NA Intergenic AluSx4|SINE|Alu -80483 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 591-87 chr20 22038173 22038665 + 2 NA Intergenic Intergenic -15671 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 175-160 chr8 52422466 52422593 + 2 NA Intergenic Intergenic -12650 NM_001352879 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 667-18 chr10 133412012 133412553 + 2 NA intron (NM_138384, intron 9 of 10) intron (NM_138384, intron 9 of 10) 12335 NM_001012508 503542 Hs.64968 NM_001012508 ENSG00000203772 SPRN SHADOO|SHO|bA108K14.1 shadow of prion protein protein-coding 240-445 chrX 58379921 58380072 + 2 NA Intergenic ALR/Alpha|Satellite|centr -469363 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 301-9 chr1 89663988 89664182 + 2 NA intron (NM_032270, intron 1 of 2) L1PA7|LINE|L1 30965 NM_032270 84230 Hs.412836 NM_032270 ENSG00000171488 LRRC8C AD158|FAD158 leucine rich repeat containing 8 VRAC subunit C protein-coding 627-124 chr9 38383804 38384322 + 2 NA Intergenic MIRb|SINE|MIR -8639 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 322-267 chr2 126349560 126349747 + 2 NA Intergenic L1ME2|LINE|L1 -231668 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 521-167 chr3 148893772 148894126 + 2 NA intron (NM_001870, intron 10 of 10) L1MDa|LINE|L1 28653 NM_001870 1359 Hs.646 NM_001870 ENSG00000163751 CPA3 MC-CPA carboxypeptidase A3 protein-coding 200-261 chr7 144400327 144400498 + 2 NA intron (NM_001080413, intron 4 of 9).2 intron (NM_001080413, intron 4 of 9).2 9815 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 392-170 chr2 234258505 234258858 + 2 NA Intergenic Intergenic 195914 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 264-83 chr11 128580586 128580766 + 2 NA intron (NM_001143820, intron 1 of 9) intron (NM_001143820, intron 1 of 9) 6882 NM_001143820 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 271-474 chr9 28011949 28012129 + 2 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -438173 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 368-33 chr1 192115356 192115652 + 2 NA Intergenic L2a|LINE|L2 -42958 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 267-130 chr15 95301663 95301851 + 2 NA intron (NR_034095, intron 1 of 3) L1MA4|LINE|L1 25343 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 258-394 chr8 91275778 91275943 + 2 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 26541 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 323-500 chr7 61926438 61926607 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1377534 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 454-284 chr7 16015326 16015742 + 2 NA Intergenic Intergenic -194952 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 461-165 chr3 3537099 3537427 + 2 NA Intergenic Intergenic -262168 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 341-353 chr3 172874949 172875136 + 2 NA Intergenic L2b|LINE|L2 124040 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 329-133 chr12 117471089 117471264 + 2 NA intron (NM_173598, intron 18 of 19) intron (NM_173598, intron 18 of 19) -109374 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 239-70 chr12 14717758 14717914 + 2 NA Intergenic L1MEd|LINE|L1 -21237 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 229-418 chr9 98476880 98477065 + 2 NA intron (NM_005458, intron 5 of 18) intron (NM_005458, intron 5 of 18) -221323 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 185-191 chr7 49573517 49573642 + 2 NA Intergenic L2|LINE|L2 -200059 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 330-118 chr12 34696380 34696689 + 2 NA Intergenic ALR/Alpha|Satellite|centr 674038 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 450-242 chr5 62161298 62161624 + 2 NA Intergenic L1MC4|LINE|L1 -144701 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 434-94 chr15 70882855 70883193 + 2 NA intron (NM_020147, intron 1 of 2) intron (NM_020147, intron 1 of 2) 9409 NM_020147 56906 Hs.591123 NM_020147 ENSG00000129028 THAP10 - THAP domain containing 10 protein-coding 484-143 chr2 175138714 175139180 + 2 NA intron (NR_045773, intron 2 of 13) MIRb|SINE|MIR 28762 NR_030630 100126350 NR_030630 ENSG00000215973 MIR933 MIRN933|hsa-mir-933|mir-933 microRNA 933 ncRNA 707-73 chr4 76468162 76468665 + 2 NA intron (NM_020859, intron 1 of 10) L1ME4b|LINE|L1 33184 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 114-16 chr14 52105256 52105343 + 2 NA Intergenic MER102a|DNA|hAT-Charlie -36240 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 379-55 chr11 35876234 35876445 + 2 NA Intergenic Intergenic -67642 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 525-86 chr16 80293545 80293972 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -246976 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 141-63 chr4 30330099 30330197 + 2 NA Intergenic Intergenic -390221 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 598-141 chr8 102180402 102180938 + 2 NA Intergenic L1MCc|LINE|L1 55238 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 338-224 chr18 11244879 11245122 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -96238 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 430-99 chr15 81453063 81453414 + 2 NA Intergenic L1MA4A|LINE|L1 -79025 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 446-182 chr3 37224925 37225363 + 2 NA Intergenic Intergenic -18127 NM_001172713 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 249-28 chr1 193850839 193850980 + 2 NA Intergenic Intergenic 546164 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 297-122 chr13 82995999 82996195 + 2 NA Intergenic Intergenic 886296 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 367-341 chr5 4310570 4310871 + 2 NA Intergenic Intergenic -462761 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 349-372 chr4 64971191 64971492 + 2 NA intron (NR_033976, intron 2 of 6) L1ME1|LINE|L1 33159 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 331-405 chr5 3903457 3903651 + 2 NA Intergenic Intergenic 307722 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 227-353 chr7 82715582 82715742 + 2 NA Intergenic MER66-int|LTR|ERV1 -271706 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 494-206 chr4 88717935 88718390 + 2 NA intron (NR_002806, intron 2 of 4) intron (NR_002806, intron 2 of 4) 8373 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 714-66 chr7 4334874 4335488 + 2 NA Intergenic Intergenic -200344 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 224-329 chr8 96650472 96650623 + 2 NA intron (NM_016134, intron 1 of 7) MIRc|SINE|MIR 5305 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 456-97 chr14 83262504 83262893 + 2 NA Intergenic L1MC1|LINE|L1 620066 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 715 chr1 215776558 215777204 + 2 NA intron (NM_206933, intron 55 of 71) intron (NM_206933, intron 55 of 71) 209577 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 289-46 chr10 14668486 14668675 + 2 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) -64179 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 378-80 chr11 48917733 48917932 + 2 NA Intergenic ALR/Alpha|Satellite|centr -113768 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 547-201 chr6 49954485 49954889 + 2 NA Intergenic L2b|LINE|L2 -5243 NR_163261 403339 Hs.745543 NM_001166478 ENSG00000214643 DEFB133 - defensin beta 133 pseudo 228-123 chr16 59021957 59022135 + 2 NA Intergenic Intergenic -287730 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 485-161 chr20 39224632 39225042 + 2 NA promoter-TSS (NR_027124) promoter-TSS (NR_027124) -89 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 510-88 chr15 73492376 73492795 + 2 NA intron (NM_001348772, intron 2 of 4) MER5A1|DNA|hAT-Charlie 49421 NM_001042367 283677 Hs.743574 NM_001042367 ENSG00000183324 REC114 C15orf60|CT147 REC114 meiotic recombination protein protein-coding 232-52 chr11 25134640 25134798 + 2 NA Intergenic L1MB2|LINE|L1 637666 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 222-334 chr7 4279379 4279553 + 2 NA Intergenic L1MB8|LINE|L1 -144629 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 379-118 chr17 12732729 12733096 + 2 NA intron (NM_001146312, intron 5 of 13) intron (NM_001146312, intron 5 of 13) -26777 NR_104605 101928418 Hs.620346 NR_104605 ENSG00000227274 LOC101928418 - uncharacterized LOC101928418 ncRNA 263-192 chr2 34760469 34760657 + 2 NA Intergenic Intergenic 83006 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 249-285 chr3 195166443 195166609 + 2 NA intron (NM_152531, intron 2 of 3) L1MC4|LINE|L1 18655 NR_102711 101410543 Hs.658170 NR_102710 ENSG00000230266 XXYLT1-AS2 - XXYLT1 antisense RNA 2 ncRNA 438-72 chr13 96412810 96413119 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) -14265 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 292-422 chr8 31419671 31419927 + 2 NA Intergenic L1M6|LINE|L1 -219953 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 366-389 chr6 148308585 148308798 + 2 NA intron (NM_001346505, intron 1 of 19) AluSq2|SINE|Alu -34147 NM_015278 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 193-76 chr16 55090176 55090297 + 2 NA Intergenic Intergenic 159037 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 246-26 chr1 226463872 226464090 + 2 NA Intergenic Intergenic -55888 NM_001618 142 Hs.177766 NM_001618 ENSG00000143799 PARP1 ADPRT|ADPRT 1|ADPRT1|ARTD1|PARP|PARP-1|PPOL|pADPRT-1 poly(ADP-ribose) polymerase 1 protein-coding 355-143 chr13 74829411 74829761 + 2 NA Intergenic Intergenic 276743 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 195-107 chr2 96360323 96360456 + 2 NA intron (NM_001281712, intron 10 of 16) intron (NM_001281712, intron 10 of 16) 24623 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 230-74 chr12 13218754 13218982 + 2 NA 3' UTR (NM_001423, exon 5 of 5) 3' UTR (NM_001423, exon 5 of 5) 22142 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 450-23 chr1 237028978 237029303 + 2 NA Intergenic Intergenic -13044 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 135-73 chr9 86824289 86824404 + 2 NA Intergenic Intergenic 123160 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 184-109 chr21 33297916 33298047 + 2 NA TTS (NM_000628) TTS (NM_000628) -26989 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 188-71 chr16 64286284 64286406 + 2 NA Intergenic L1MEf|LINE|L1 835718 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 601-149 chr8 133961741 133962190 + 2 NA Intergenic Intergenic 75469 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 313-461 chr6 22435738 22436033 + 2 NA Intergenic AluY|SINE|Alu -133050 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 413-278 chr7 67908514 67908921 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -111536 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 260-307 chr4 52813924 52814113 + 2 NA intron (NR_040106, intron 4 of 4) intron (NR_040106, intron 4 of 4) 24024 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 635-97 chr7 4398977 4399532 + 2 NA Intergenic Intergenic -264417 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 134-41 chr18 41371773 41371847 + 2 NA Intergenic Intergenic 148867 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 510-156 chr2 149919863 149920172 + 2 NA Intergenic L1MA9|LINE|L1 -60826 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 321-467 chr5 76073173 76073472 + 2 NA Intergenic L1PB1|LINE|L1 -10061 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 352-307 chr3 2484050 2484370 + 2 NA intron (NM_175607, intron 3 of 24) L1MC|LINE|L1 245381 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 303-346 chr5 11958580 11958816 + 2 NA Intergenic Intergenic -54252 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 409-116 chr18 13960901 13961260 + 2 NA Intergenic Intergenic -45373 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 253-63 chr11 2649874 2650082 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 50020 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 183-165 chr8 117018893 117019039 + 2 NA intron (NM_001172813, intron 2 of 10) intron (NM_001172813, intron 2 of 10) 67991 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 328-221 chr18 14772555 14772745 + 2 NA intron (NR_160272, intron 9 of 29) intron (NR_160272, intron 9 of 29) 24478 NR_160272 374860 Hs.567889 NM_001145029 ENSG00000180777 ANKRD30B NY-BR-1.1 ankyrin repeat domain 30B protein-coding 340-151 chr14 62551821 62552041 + 2 NA Intergenic L1PA13|LINE|L1 -411958 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 294-435 chr7 49042668 49042840 + 2 NA Intergenic L1M1|LINE|L1 118207 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 529-8 chr1 209131575 209131983 + 2 NA Intergenic MER4D1|LTR|ERV1 159325 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 386-45 chr10 125545512 125545831 + 2 NA Intergenic Intergenic -28700 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 315-35 chr1 225296225 225296434 + 2 NA intron (NM_001367479, intron 55 of 85) AluJo|SINE|Alu 131709 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 306-147 chr14 63595562 63595859 + 2 NA Intergenic L1MB5|LINE|L1 46161 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 285-33 chr10 31292179 31292370 + 2 NA Intergenic L1ME3G|LINE|L1 -26143 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 328-47 chr10 20264860 20265081 + 2 NA intron (NM_032812, intron 13 of 13) HAL1M8|LINE|L1 -287000 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 302-6 chr1 44541418 44541686 + 2 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) -3941 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 454-251 chr5 21045654 21046000 + 2 NA Intergenic L1MEg|LINE|L1 -413653 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 182-56 chr14 72682540 72682663 + 2 NA intron (NM_001280544, intron 7 of 9) intron (NM_001280544, intron 7 of 9) 165781 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 211-208 chr4 69586136 69586241 + 2 NA Intergenic Intergenic 53454 NM_001105677 574537 Hs.225950 NM_001105677 ENSG00000271271 UGT2A2 - UDP glucuronosyltransferase family 2 member A2 protein-coding 446-198 chr3 117490786 117491179 + 2 NA Intergenic Intergenic 199943 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 354-171 chr17 34625399 34625728 + 2 NA intron (NM_001304438, intron 1 of 8) intron (NM_001304438, intron 1 of 8) 44814 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 203-42 chr11 105816231 105816360 + 2 NA intron (NR_046356, intron 3 of 16) MSTA|LTR|ERVL-MaLR 205589 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 333-34 chr1 174573953 174574268 + 2 NA intron (NM_001366446, intron 13 of 25) MamRep434|DNA|TcMar-Tigger 126146 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 326-94 chr11 27147685 27147956 + 2 NA intron (NR_125767, intron 3 of 4) L1MC1|LINE|L1 70948 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 247-221 chr2 166496489 166496672 + 2 NA Intergenic Intergenic -9609 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 253-120 chr13 88195787 88195986 + 2 NA intron (NR_131919, intron 1 of 4) L1MEf|LINE|L1 53019 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 378-380 chr6 91303810 91304090 + 2 NA Intergenic Intergenic -217710 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 477-277 chr8 77461393 77461652 + 2 NA intron (NR_125830, intron 1 of 2) intron (NR_125830, intron 1 of 2) 10825 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 368-439 chr8 4727905 4728217 + 2 NA intron (NM_033225, intron 1 of 69) (AT)n|Simple_repeat|Simple_repeat 266853 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 345-451 chr5 169270615 169270905 + 2 NA intron (NM_003062, intron 1 of 35) MIR|SINE|MIR -7066 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 390-242 chr3 80763321 80763690 + 2 NA Intergenic Intergenic -1392 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 398-264 chr5 29557472 29557817 + 2 NA Intergenic Intergenic -161668 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 304-262 chr2 107190541 107190699 + 2 NA intron (NR_049853, intron 2 of 3) L1MCa|LINE|L1 158905 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 333-489 chr5 174119504 174119678 + 2 NA Intergenic Intergenic 73885 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 490-45 chr10 91709343 91709776 + 2 NA Intergenic Intergenic -76488 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 337-381 chr4 25690495 25690712 + 2 NA Intergenic AluSx1|SINE|Alu 34139 NM_001177999 10568 Hs.479372 NM_006424 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 member 2 protein-coding 239-132 chr17 69955322 69955485 + 2 NA Intergenic L1PB4|LINE|L1 -6304 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 227-148 chr18 68606501 68606663 + 2 NA Intergenic Intergenic 108526 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 388-18 chr1 168005539 168005868 + 2 NA intron (NR_146230, intron 10 of 17) intron (NR_146230, intron 10 of 17) 7043 NR_031702 100313835 NR_031702 ENSG00000221545 MIR1255B2 MIR1255B-2|MIRN1255B2|hsa-mir-1255b-2 microRNA 1255b-2 ncRNA 225-289 chr5 118583638 118583758 + 2 NA Intergenic Intergenic -12490 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 513-241 chr6 45174239 45174692 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) 23305 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 600-117 chr7 53832798 53833282 + 2 NA Intergenic L1ME3D|LINE|L1 -21109 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 481-241 chr5 27870778 27871191 + 2 NA Intergenic L1PA10|LINE|L1 398692 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 190-62 chr15 35148337 35148494 + 2 NA Intergenic Intergenic -63007 NM_001355281 388112 Hs.635882 NM_001355281 ENSG00000255192 NANOGP8 NANOGP1|PN8 Nanog homeobox retrogene P8 protein-coding 221-232 chr5 10714579 10714792 + 2 NA intron (NM_004394, intron 2 of 3) MSTA|LTR|ERVL-MaLR 46549 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 265-10 chr1 79951467 79951695 + 2 NA Intergenic Intergenic -584174 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 179-17 chr12 41996684 41996858 + 2 NA Intergenic Intergenic 148103 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 597-106 chr5 54286892 54287286 + 2 NA intron (NM_019087, intron 1 of 4) AluJb|SINE|Alu 23484 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 249-177 chr19 47259488 47259665 + 2 NA intron (NM_015603, intron 3 of 11) intron (NM_015603, intron 3 of 11) 3051 NM_015603 26093 Hs.227782 NM_015603 ENSG00000105321 CCDC9 - coiled-coil domain containing 9 protein-coding 462-290 chr8 138796959 138797317 + 2 NA intron (NM_152888, intron 11 of 64) L1MB8|LINE|L1 116903 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 248-159 chr18 68191317 68191502 + 2 NA Intergenic L1PA16|LINE|L1 -376587 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 322-389 chr4 120383172 120383343 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie -316409 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 254-277 chr4 82174931 82175143 + 2 NA Intergenic Intergenic 198954 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 465-183 chr3 123845652 123845921 + 2 NA intron (NM_001321309, intron 2 of 32) AluJo|SINE|Alu 38546 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 367-423 chr7 80356745 80357051 + 2 NA Intergenic L1MB5|LINE|L1 17541 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 244-255 chr4 52111010 52111181 + 2 NA Intergenic L1MC2|LINE|L1 59791 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 222-392 chr9 109501276 109501468 + 2 NA Intergenic Intergenic -3065 NM_001145368 5774 Hs.436429 NM_002829 ENSG00000070159 PTPN3 PTP-H1|PTPH1 protein tyrosine phosphatase non-receptor type 3 protein-coding 279-270 chr3 111230331 111230520 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 158609 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 424-267 chr7 96752743 96753024 + 2 NA Intergenic Intergenic -42992 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 209-33 chr10 25491652 25491833 + 2 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -159970 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 283-199 chr18 47527895 47528141 + 2 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 147522 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 305-400 chr4 97735906 97736113 + 2 NA intron (NM_174952, intron 9 of 10) L1MA9|LINE|L1 369083 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 555-195 chr8 35408586 35408955 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -135622 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 520-57 chr11 106109549 106109997 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 22343 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 246-169 chr18 38861371 38861611 + 2 NA Intergenic L1MD1|LINE|L1 760684 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 355-128 chr12 37971890 37972183 + 2 NA Intergenic ALR/Alpha|Satellite|centr -344738 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 1008-10 chr20 59629677 59630544 + 2 NA intron (NM_001281507, intron 1 of 12) intron (NM_001281507, intron 1 of 12) 1501 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 387-34 chr10 34152143 34152442 + 2 NA intron (NM_001184789, intron 20 of 22) Tigger3a|DNA|TcMar-Tigger -379612 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 320-314 chr20 43124532 43124746 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 65267 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 291-169 chr17 32574443 32574659 + 2 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 87558 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 342-396 chr5 45558371 45558550 + 2 NA intron (NM_021072, intron 2 of 7) Tigger1|DNA|TcMar-Tigger 137920 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 608-32 chr12 97063120 97063541 + 2 NA Intergenic Intergenic 155864 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 289-465 chr8 78300519 78300751 + 2 NA Intergenic L1MC3|LINE|L1 -215705 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 252-250 chr3 17368225 17368402 + 2 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 331707 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 316-568 chr8 131762059 131762318 + 2 NA Intergenic Intergenic -141905 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 327-441 chr6 86697187 86697452 + 2 NA Intergenic L1ME1|LINE|L1 -240209 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 496-178 chr3 80878771 80879185 + 2 NA Intergenic Intergenic 108274 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 251-312 chr5 112513557 112513796 + 2 NA Intergenic Intergenic 94093 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 369-353 chr6 52465210 52465490 + 2 NA intron (NR_033327, intron 5 of 9) L1MC5a|LINE|L1 44342 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 137-67 chr4 130685646 130685737 + 2 NA Intergenic Intergenic 309330 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 346-185 chr17 21079238 21079411 + 2 NA intron (NR_110896, intron 1 of 1) HERVK9-int|LTR|ERVK 3768 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 606-57 chr16 26807658 26808165 + 2 NA Intergenic MER113|DNA|hAT-Charlie -259016 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 712-40 chr2 18576749 18577202 + 2 NA intron (NM_001199104, intron 7 of 10) intron (NM_001199104, intron 7 of 10) 12594 NM_033253 93034 Hs.744358 NM_033253 ENSG00000185013 NT5C1B AIRP|CN-IB|CN1B 5'-nucleotidase, cytosolic IB protein-coding 335-259 chr2 118532307 118532517 + 2 NA Intergenic L1ME3Cz|LINE|L1 70554 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 477-69 chr12 9724511 9724890 + 2 NA intron (NM_001253750, intron 1 of 3) L1MEf|LINE|L1 8599 NM_172004 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 239-394 chr8 25609180 25609319 + 2 NA Intergenic Intergenic 150016 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 441-52 chr12 14286247 14286483 + 2 NA Intergenic Intergenic -79267 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 444-115 chr2 42293071 42293466 + 2 NA intron (NM_001145076, intron 10 of 21) AluJr4|SINE|Alu 66770 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 449-19 chr1 216779267 216779564 + 2 NA intron (NM_001243513, intron 1 of 7) (TATATA)n|Simple_repeat|Simple_repeat 25970 NM_001243514 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 479-31 chr10 126423708 126424109 + 2 NA Intergenic LTR41|LTR|ERVL -2022 NR_148989 728158 Hs.646701 NR_148989 LOC728158 - uncharacterized LOC728158 ncRNA 220-333 chr7 721091 721251 + 2 NA intron (NM_001164759, intron 1 of 10) L1MDa|LINE|L1 -5528 NM_017802 54919 Hs.535896 NM_017802 ENSG00000164818 DNAAF5 CILD18|HEATR2 dynein axonemal assembly factor 5 protein-coding 221-240 chr5 60170095 60170248 + 2 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) 202492 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 209-215 chr3 190217205 190217358 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -94844 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 278-38 chr10 72663914 72664118 + 2 NA Intergenic Intergenic -28115 NR_073062 90550 Hs.591366 NM_138357 ENSG00000156026 MCU C10orf42|CCDC109A|HsMCU mitochondrial calcium uniporter protein-coding 280-5 chr1 59187956 59188135 + 2 NA Intergenic MIR|SINE|MIR -41238 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 119-52 chr6 143102117 143102186 + 2 NA intron (NM_001366344, intron 2 of 6) intron (NM_001366344, intron 2 of 6) -23988 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 225-234 chr4 35286787 35286939 + 2 NA Intergenic Intergenic 957076 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 259-440 chrX 40411362 40411574 + 2 NA Intergenic Intergenic 148551 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 298-57 chr10 92002127 92002372 + 2 NA intron (NM_003972, intron 25 of 37) intron (NM_003972, intron 25 of 37) 78479 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 273-333 chr4 106093953 106094175 + 2 NA intron (NM_001290768, intron 26 of 26) intron (NM_001290768, intron 26 of 26) -71586 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 318-319 chr20 42434890 42435125 + 2 NA intron (NM_133170, intron 9 of 31) A-rich|Low_complexity|Low_complexity -250476 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 258-414 chr8 136779843 136780080 + 2 NA intron (NR_147196, intron 2 of 5) AluSq|SINE|Alu 249163 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 465-19 chr10 8718059 8718381 + 2 NA Intergenic L1M2|LINE|L1 -123829 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 505-311 chr8 119180718 119181088 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -27460 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 347-117 chr14 22325943 22326166 + 2 NA Intergenic Intergenic 106699 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 437-12 chr1 194742694 194743045 + 2 NA Intergenic Intergenic 1345846 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 361-84 chr11 94208671 94208925 + 2 NA Intergenic L1MA8|LINE|L1 79957 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 127-31 chr14 85814912 85815028 + 2 NA Intergenic Intergenic -119708 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 405-67 chr12 81813235 81813494 + 2 NA Intergenic L1PA11|LINE|L1 -54014 NM_003625 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 192-32 chr10 130982533 130982688 + 2 NA Intergenic Intergenic -19942 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 279-376 chr6 151194483 151194653 + 2 NA Intergenic L1M3|LINE|L1 33889 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 418-220 chr5 86564126 86564358 + 2 NA Intergenic LTR55|LTR|ERVL? -53699 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 345-309 chr20 42892853 42893047 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -75793 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 297-383 chr5 148939641 148939846 + 2 NA Intergenic MER113|DNA|hAT-Charlie 113150 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 264-190 chr2 4767593 4767828 + 2 NA Intergenic Intergenic -111488 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 328-168 chr15 27008063 27008363 + 2 NA intron (NM_001270873, intron 2 of 5) intron (NM_001270873, intron 2 of 5) 37032 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 561-62 chr13 99429308 99429702 + 2 NA Intergenic L1ME3G|LINE|L1 69801 NR_110731 102725509 Hs.648968 NR_110731 LINC01232 TCONS_00021520 long intergenic non-protein coding RNA 1232 ncRNA 342-227 chr2 32335397 32335676 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -21492 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 537-119 chr2 107379036 107379481 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -29733 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 437-163 chr21 20800627 20800892 + 2 NA intron (NR_109787, intron 1 of 6) intron (NR_109787, intron 1 of 6) 2349 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 311-210 chr18 13955739 13955972 + 2 NA Intergenic L1PA14|LINE|L1 -40148 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 255-125 chr15 57050527 57050735 + 2 NA intron (NM_001322164, intron 3 of 19) L1ME2|LINE|L1 131186 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 227-133 chr16 79784980 79785198 + 2 NA intron (NR_104660, intron 1 of 3) L1PA15|LINE|L1 -10160 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 310-229 chr2 44736380 44736552 + 2 NA intron (NM_024766, intron 7 of 10) L1MEc|LINE|L1 202422 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 209-89 chr14 49730954 49731092 + 2 NA intron (NM_172193, intron 8 of 12) AluSx|SINE|Alu -37130 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 362-317 chr4 93021243 93021489 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 716967 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 445-146 chr2 236430211 236430544 + 2 NA intron (NR_073043, intron 7 of 19) L1ME4b|LINE|L1 73320 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 455-164 chr3 72741889 72742192 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -77791 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 232-322 chr6 39588903 39589081 + 2 NA intron (NM_001289020, intron 7 of 21) L2a|LINE|L2 136416 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 375-169 chr17 69850151 69850416 + 2 NA intron (NR_109972, intron 4 of 4) L1MB3|LINE|L1 -111424 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 344-437 chr6 142871143 142871423 + 2 NA intron (NM_006734, intron 1 of 9) MIRc|SINE|MIR 73893 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 368-260 chr20 9473605 9473930 + 2 NA intron (NM_182797, intron 35 of 35) intron (NM_182797, intron 35 of 35) -40591 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 322-54 chr10 28450523 28450764 + 2 NA intron (NR_134496, intron 1 of 2) AluSx|SINE|Alu 45170 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 347-221 chr2 69548318 69548504 + 2 NA intron (NM_014911, intron 3 of 21) (CTTT)n|Simple_repeat|Simple_repeat -28240 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 248-321 chr5 105078174 105078322 + 2 NA Intergenic Intergenic -21226 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 347-399 chr5 59747539 59747727 + 2 NA intron (NM_001165899, intron 3 of 16) L2a|LINE|L2 21215 NM_001364603 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 354-219 chr2 123284852 123285133 + 2 NA Intergenic Intergenic -211511 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 321-93 chr11 26387177 26387337 + 2 NA intron (NM_031418, intron 1 of 26) AluSx3|SINE|Alu 55127 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 282-239 chr2 178185590 178185834 + 2 NA Intergenic L1MA8|LINE|L1 -8769 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 219-168 chr2 77218270 77218442 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 232391 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 239-320 chr5 85223342 85223557 + 2 NA Intergenic MIR3|SINE|MIR -838569 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 384-272 chr4 114708665 114708978 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 52062 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 618-23 chr12 2706363 2706807 + 2 NA Intergenic L1MB2|LINE|L1 -15428 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 554-151 chr3 176774835 176775354 + 2 NA Intergenic L1MA3|LINE|L1 41907 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 325-33 chr1 194706807 194707121 + 2 NA Intergenic L1M4|LINE|L1 1381751 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 203-103 chr2 17515470 17515637 + 2 NA exon (NM_001321233, exon 5 of 7) exon (NM_001321233, exon 5 of 7) 2887 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 300-169 chr19 9375726 9375978 + 2 NA promoter-TSS (NM_001172651) promoter-TSS (NM_001172651) -464 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 198-27 chr10 85886702 85886825 + 2 NA intron (NM_017551, intron 5 of 15) intron (NM_017551, intron 5 of 15) 309032 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 340-407 chr4 84641206 84641428 + 2 NA intron (NM_001263, intron 10 of 12) AluSz6|SINE|Alu 58190 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 296-456 chr8 43833373 43833583 + 2 NA Intergenic ALR/Alpha|Satellite|centr 541036 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 358-510 chr9 25912448 25912705 + 2 NA Intergenic Intergenic 132520 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 195-190 chr5 29348617 29348757 + 2 NA Intergenic Intergenic 47289 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 384-349 chr7 86217944 86218256 + 2 NA Intergenic Intergenic -425809 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 265-107 chr14 66175695 66175855 + 2 NA Intergenic Intergenic -310596 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 175-69 chr18 22080689 22080791 + 2 NA Intergenic Intergenic 88228 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 603-124 chr4 80308549 80308930 + 2 NA Intergenic Intergenic -26981 NM_001206997 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 471-23 chr10 23857163 23857488 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 162598 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 506-83 chr14 51638638 51639118 + 2 NA intron (NM_001042481, intron 2 of 14) intron (NM_001042481, intron 2 of 14) 12866 NR_037676 145438 Hs.645410 NR_037676 ENSG00000273888 FRMD6-AS1 C14orf82 FRMD6 antisense RNA 1 ncRNA 232-241 chr3 80590217 80590400 + 2 NA Intergenic HAL1|LINE|L1 -174589 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 160-44 chr2 135324919 135325026 + 2 NA intron (NM_001286569, intron 6 of 21) L1M4|LINE|L1 188344 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 853-40 chr7 57395144 57395730 + 2 NA Intergenic AluSp|SINE|Alu -9330 NR_120505 100653233 Hs.127379 NR_120505 ENSG00000260653 LOC100653233 - uncharacterized LOC100653233 ncRNA 358-18 chr1 179714115 179714310 + 2 NA Intergenic L1M3b|LINE|L1 -13564 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 317-552 chrX 137442856 137443112 + 2 NA Intergenic MER33|DNA|hAT-Charlie -123143 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 288-3 chr1 20422096 20422262 + 2 NA intron (NR_033887, intron 1 of 11) L1MB7|LINE|L1 6615 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 234-215 chr20 52787716 52787888 + 2 NA Intergenic Intergenic 166964 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 442-121 chr2 18426391 18426745 + 2 NA Intergenic Intergenic 134085 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 217-9 chr1 63217760 63217952 + 2 NA intron (NR_038252, intron 4 of 11) intron (NR_038252, intron 4 of 11) 99401 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 284-176 chr19 12537410 12537567 + 2 NA intron (NM_144976, intron 1 of 3) AluSp|SINE|Alu 13994 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 173-145 chr9 8310381 8310535 + 2 NA Intergenic L1ME3A|LINE|L1 423488 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 223-4 chr1 63883789 63883969 + 2 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 109862 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 341-555 chr8 142374851 142375112 + 2 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 28201 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 339-133 chr12 108371645 108371874 + 2 NA Intergenic MIR|SINE|MIR -32448 NM_004072 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 396-337 chr7 88483593 88483857 + 2 NA Intergenic Intergenic -176831 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 135-70 chr8 129543749 129543830 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 31229 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 246-153 chr17 53308518 53308645 + 2 NA Intergenic L1M3|LINE|L1 323076 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 311-115 chr13 39110959 39111222 + 2 NA Intergenic Intergenic 72634 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 249-169 chr19 12077659 12077864 + 2 NA TTS (NR_134326) TTS (NR_134326) 13030 NM_001136501 284391 Hs.646391 NM_001136501 ENSG00000223547 ZNF844 - zinc finger protein 844 protein-coding 313-156 chr14 75827086 75827334 + 2 NA intron (NM_015072, intron 28 of 31) intron (NM_015072, intron 28 of 31) 154785 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 304-294 chr20 17355895 17356144 + 2 NA intron (NM_002594, intron 2 of 11) LTR16B2|LTR|ERVL 128979 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 278-417 chr8 96630591 96630761 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -14566 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 282-185 chr19 34601084 34601252 + 2 NA intron (NR_027620, intron 1 of 3) L1ME3B|LINE|L1 -6583 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 282-195 chr2 23093592 23093840 + 2 NA Intergenic MER130|DNA|DNA -291463 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 252-88 chr12 25585418 25585607 + 2 NA intron (NM_001352232, intron 1 of 10) intron (NM_001352232, intron 1 of 10) -32229 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 353-102 chr12 18275876 18276202 + 2 NA intron (NM_001288774, intron 1 of 32) intron (NM_001288774, intron 1 of 32) 14499 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 353-52 chr10 31435049 31435232 + 2 NA intron (NM_001323646, intron 4 of 11) MLT1D|LTR|ERVL-MaLR -35385 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 377-254 chr20 59797676 59798002 + 2 NA intron (NM_080672, intron 7 of 12) L1MEc|LINE|L1 76629 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 391-96 chr14 29787358 29787703 + 2 NA intron (NM_001330069, intron 1 of 18) L1MA4|LINE|L1 139566 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 308-472 chr7 89248501 89248689 + 2 NA intron (NM_181646, intron 2 of 3) L1PA16|LINE|L1 -452858 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 133-68 chr5 158205558 158205687 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 204151 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 272-14 chr1 163153231 163153437 + 2 NA intron (NM_001195303, intron 1 of 2) L2b|LINE|L2 -8341 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 253-88 chr11 118320456 118320658 + 2 NA Intergenic L2c|LINE|L2 15977 NM_000733 916 Hs.3003 NM_000733 ENSG00000198851 CD3E IMD18|T3E|TCRE CD3e molecule protein-coding 561-215 chr9 83522987 83523480 + 2 NA intron (NM_174938, intron 1 of 13) (GGAT)n|Simple_repeat|Simple_repeat 15168 NM_001244959 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 220-199 chr20 123003 123183 + 2 NA Intergenic Intergenic -19497 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 576-15 chr10 20390607 20391136 + 2 NA Intergenic L1MEh|LINE|L1 -161099 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 541-206 chr6 124697484 124697845 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -264881 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 391-335 chr8 5558371 5558712 + 2 NA Intergenic L1ME2|LINE|L1 -563627 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 271-189 chr2 19592765 19593001 + 2 NA Intergenic Charlie17|DNA|hAT-Charlie -234260 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 227-308 chr6 46880390 46880537 + 2 NA intron (NM_001098518, intron 8 of 20) Charlie19a|DNA|hAT-Charlie -23008 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 580-80 chr2 57763466 57763966 + 2 NA Intergenic Intergenic -143935 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 169-124 chr7 57345663 57345826 + 2 NA Intergenic AluSq2|SINE|Alu -59023 NR_120505 100653233 Hs.127379 NR_120505 ENSG00000260653 LOC100653233 - uncharacterized LOC100653233 ncRNA 313-146 chr14 60012741 60013016 + 2 NA intron (NR_075071, intron 23 of 32) intron (NR_075071, intron 23 of 32) -79033 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 231-49 chr11 11878910 11879132 + 2 NA intron (NM_001330208, intron 2 of 28) intron (NM_001330208, intron 2 of 28) 37598 NM_017944 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 499-13 chr1 189953279 189953717 + 2 NA Intergenic Intergenic 522512 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 586-28 chr11 29100815 29101234 + 2 NA Intergenic Intergenic -493389 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 363-76 chr11 21041543 21041765 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 372068 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 190-162 chr7 41280607 41280757 + 2 NA Intergenic LTR16A1|LTR|ERVL 179078 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 349-146 chr13 76166584 76166857 + 2 NA Intergenic Intergenic -231588 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 327-187 chr16 64866136 64866358 + 2 NA Intergenic Intergenic 255816 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 333-363 chr3 115751138 115751360 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 127739 NM_001130064 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 423-252 chr6 146208681 146208939 + 2 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 179612 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 229-176 chr2 44251894 44252112 + 2 NA Intergenic L1MB1|LINE|L1 -23477 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 287-397 chr8 61755769 61756025 + 2 NA Intergenic MIR|SINE|MIR 41109 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 301-451 chr8 84026009 84026227 + 2 NA Intergenic Intergenic -156669 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 218-249 chr4 97812176 97812318 + 2 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 331229 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 463-295 chr8 133227611 133227940 + 2 NA non-coding (NR_037944, exon 3 of 3) non-coding (NR_037944, exon 3 of 3) 36736 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 334-183 chr15 99594614 99594835 + 2 NA intron (NM_001352616, intron 1 of 10) MER21B|LTR|ERVL 28241 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 279-196 chr2 137368577 137368768 + 2 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 559260 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 295-210 chr2 62073419 62073623 + 2 NA intron (NM_001321781, intron 2 of 2) MER4D|LTR|ERV1 -122594 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 367-255 chr21 14418220 14418517 + 2 NA Intergenic L1MA9|LINE|L1 -35222 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 420-51 chr11 36859570 36859977 + 2 NA Intergenic AluSz6|SINE|Alu -261494 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 365-125 chr14 80276666 80277008 + 2 NA intron (NR_038355, intron 2 of 8) MLT1L|LTR|ERVL-MaLR -45780 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 333-517 chr6 144398505 144398721 + 2 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) -7042 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 487-60 chr11 79878594 79878981 + 2 NA Intergenic Intergenic -437757 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 118-44 chr5 133139583 133139652 + 2 NA Intergenic Intergenic 87604 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 405-53 chr12 5303730 5304105 + 2 NA Intergenic HAL1M8|LINE|L1 -60766 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 307-265 chr2 213486405 213486603 + 2 NA intron (NR_047660, intron 8 of 14) L1MA4|LINE|L1 202040 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 236-322 chr7 38056360 38056552 + 2 NA Intergenic L1M5|LINE|L1 -121789 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 279-76 chr12 14504787 14505042 + 2 NA intron (NM_024829, intron 10 of 10) intron (NM_024829, intron 10 of 10) -62818 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 294-466 chr8 72236219 72236449 + 2 NA intron (NR_033867, intron 6 of 19) L1MEi|LINE|L1 15300 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 330-547 chr9 25089550 25089824 + 2 NA Intergenic Intergenic -543790 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 370-484 chrX 50792525 50792850 + 2 NA intron (NR_027121, intron 1 of 9) L1MB1|LINE|L1 21357 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 411-222 chr5 15203705 15203972 + 2 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 62722 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 444-280 chr9 29719370 29719662 + 2 NA Intergenic Intergenic -505915 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 221-165 chr20 47697558 47697707 + 2 NA intron (NM_198596, intron 4 of 20) intron (NM_198596, intron 4 of 20) 88432 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 159-36 chr18 7903535 7903674 + 2 NA intron (NM_002845, intron 3 of 30) intron (NM_002845, intron 3 of 30) 336288 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 297-96 chr12 13742779 13742939 + 2 NA intron (NM_000834, intron 3 of 12) MLT1J|LTR|ERVL-MaLR 237497 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 523-207 chr4 123861436 123861808 + 2 NA intron (NR_027105, intron 4 of 5) intron (NR_027105, intron 4 of 5) 87358 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 340-306 chr20 7057255 7057430 + 2 NA Intergenic LTR33|LTR|ERVL 196860 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 529-125 chr2 234597677 234598165 + 2 NA Intergenic L1M4|LINE|L1 -84747 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 345-450 chr5 167515146 167515357 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -58408 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 194-184 chr6 67852563 67852691 + 2 NA Intergenic L1MA2|LINE|L1 -202724 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 315-447 chr7 70481430 70481598 + 2 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -650630 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 444-267 chr8 120723291 120723684 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -37766 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 323-202 chr18 53994467 53994743 + 2 NA Intergenic Intergenic 227807 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 244-121 chr16 54522836 54522977 + 2 NA Intergenic Intergenic -152207 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 246-233 chr20 51961491 51961725 + 2 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat -98695 NR_110016 101927678 Hs.683840 NR_110016 ENSG00000227964 LINC01429 - long intergenic non-protein coding RNA 1429 ncRNA 716-57 chr4 103969012 103969633 + 2 NA Intergenic AluSx1|SINE|Alu -249337 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 217-307 chr5 118062145 118062311 + 2 NA intron (NR_104997, intron 2 of 2) L1PA16|LINE|L1 -220346 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 207-275 chr7 103884968 103885081 + 2 NA intron (NM_005045, intron 2 of 64) L1PA7|LINE|L1 104492 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 314-309 chr2 160833008 160833169 + 2 NA Intergenic Intergenic -303867 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 332-455 chr6 54768786 54769069 + 2 NA Intergenic Intergenic -77844 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 933-19 chr2 59436489 59437222 + 2 NA Intergenic Intergenic 219147 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 227-228 chr3 70079668 70079860 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 80020 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 309-546 chr8 84436626 84436924 + 2 NA intron (NM_001354308, intron 2 of 9) L1MA10|LINE|L1 21291 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 310-56 chr10 98359295 98359556 + 2 NA Intergenic L1MB7|LINE|L1 35882 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 401-171 chr2 125218145 125218479 + 2 NA Intergenic L1MA5A|LINE|L1 899673 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 224-8 chr1 55778136 55778294 + 2 NA Intergenic Intergenic 166748 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 328-607 chr9 87368781 87369023 + 2 NA Intergenic L1ME1|LINE|L1 -128326 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 186-127 chr5 26970132 26970281 + 2 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 68380 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 181-94 chr3 84633387 84633496 + 2 NA Intergenic L2a|LINE|L2 236134 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 437-71 chr14 43023442 43023774 + 2 NA Intergenic MER33|DNA|hAT-Charlie 1416752 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 307-281 chr21 27482856 27483022 + 2 NA Intergenic L2|LINE|L2 -239440 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 248-391 chr8 6378035 6378182 + 2 NA Intergenic Intergenic 28440 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 494-239 chr5 149769252 149769609 + 2 NA intron (NM_001172698, intron 1 of 10) intron (NM_001172698, intron 1 of 10) -2510 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 243-330 chr4 87413051 87413205 + 2 NA Intergenic Intergenic -9445 NM_024047 53343 Hs.149500 NM_024047 ENSG00000170502 NUDT9 NUDT10 nudix hydrolase 9 protein-coding 187-107 chr3 64610217 64610373 + 2 NA intron (NM_001318781, intron 21 of 38) L1MB5|LINE|L1 48949 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 442-312 chr9 29172943 29173213 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 39221 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 528-207 chr5 141109061 141109525 + 2 NA Intergenic Intergenic 9051 NM_018937 56132 Hs.508987 NM_018937 ENSG00000113205 PCDHB3 PCDH-BETA3 protocadherin beta 3 protein-coding 414-340 chr8 133562469 133562807 + 2 NA intron (NM_003033, intron 1 of 8) intron (NM_003033, intron 1 of 8) 9249 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 321-4 chr1 20570071 20570281 + 2 NA Intergenic L2a|LINE|L2 17603 NM_207334 163933 Hs.429179 NM_207334 ENSG00000183114 FAM43B - family with sequence similarity 43 member B protein-coding 268-190 chr2 49683589 49683773 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 290522 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 332-419 chr5 75277862 75278123 + 2 NA Intergenic Intergenic -41114 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 283-3 chr1 21625166 21625346 + 2 NA intron (NM_001350526, intron 6 of 28) MIRc|SINE|MIR 26642 NM_001145658 5909 Hs.148178 NM_002885 ENSG00000076864 RAP1GAP RAP1GA1|RAP1GAP1|RAP1GAPII|RAPGAP RAP1 GTPase activating protein protein-coding 380-326 chr5 170467902 170468145 + 2 NA intron (NM_001034838, intron 1 of 7) MamRep1151|LTR?|LTR? -35997 NM_001034837 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 240-233 chr2 144562951 144563122 + 2 NA intron (NR_110570, intron 1 of 2) intron (NR_110570, intron 1 of 2) -38592 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 302-305 chr3 189657184 189657458 + 2 NA intron (NM_003722, intron 1 of 13) L1MC3|LINE|L1 25932 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 217-378 chr8 134444163 134444359 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -153810 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 734-13 chr11 58107327 58107916 + 2 NA intron (NM_001005212, intron 2 of 2) L1PA6|LINE|L1 11823 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 302-98 chr12 24147830 24148073 + 2 NA intron (NM_152989, intron 4 of 17) L1ME2|LINE|L1 -64470 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 168-49 chr19 53545027 53545155 + 2 NA intron (NM_001317113, intron 2 of 4) L1MD2|LINE|L1 6303 NM_001253800 55422 Hs.185674 NM_018555 ENSG00000130844 ZNF331 RITA|ZNF361|ZNF463 zinc finger protein 331 protein-coding 317-532 chr9 88412209 88412392 + 2 NA intron (NM_006717, intron 1 of 5) L1MC5|LINE|L1 23856 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 383-220 chr20 17087707 17088028 + 2 NA Intergenic Intergenic -138240 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 512-118 chr2 58977768 58978253 + 2 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -239698 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 501-132 chr20 40523907 40524275 + 2 NA Intergenic MIRb|SINE|MIR 165145 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 507-71 chr13 28688143 28688495 + 2 NA Intergenic L1PA7|LINE|L1 29189 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 579-87 chr20 51067812 51068314 + 2 NA Intergenic L1MEb|LINE|L1 -44956 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 315-528 chrX 73926967 73927249 + 2 NA Intergenic L1MA8|LINE|L1 -17216 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 162-135 chr8 111456245 111456367 + 2 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 79667 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 671-19 chr11 110219427 110219943 + 2 NA intron (NM_001260493, intron 14 of 15) L2a|LINE|L2 77027 NM_001260494 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 619-95 chr4 147399487 147399925 + 2 NA Intergenic Intergenic -54989 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 271-122 chr14 36674631 36674861 + 2 NA intron (NM_006194, intron 4 of 4) intron (NM_006194, intron 4 of 4) 17178 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 524-46 chr12 20129850 20130319 + 2 NA Intergenic Intergenic -2183 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 431-53 chr11 39838960 39839370 + 2 NA Intergenic Intergenic 453965 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 716-92 chr9 81470729 81471225 + 2 NA Intergenic Intergenic 218558 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 119-54 chr7 32554608 32554709 + 2 NA intron (NM_015060, intron 8 of 15) intron (NM_015060, intron 8 of 15) 59169 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 481-89 chr14 57565242 57565633 + 2 NA intron (NM_001306087, intron 7 of 7) L2c|LINE|L2 -71580 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 288-298 chr4 63699544 63699691 + 2 NA Intergenic L1MC3|LINE|L1 709833 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 625-94 chr6 53721017 53721543 + 2 NA Intergenic AluY|SINE|Alu -55524 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 324-413 chr4 178798115 178798394 + 2 NA Intergenic Intergenic -890318 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 321-461 chr5 56433918 56434152 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 47734 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 248-278 chr4 53777559 53777761 + 2 NA Intergenic Intergenic 81759 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 443-161 chr2 192667283 192667690 + 2 NA Intergenic MIR|SINE|MIR -82359 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 641-26 chr12 22873483 22873918 + 2 NA Intergenic Intergenic 248529 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 168-42 chr17 60649836 60649975 + 2 NA intron (NM_003620, intron 4 of 5) intron (NM_003620, intron 4 of 5) -27946 NM_001330414 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 523-285 chr9 82506704 82507060 + 2 NA Intergenic L1PB1|LINE|L1 518110 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 482-219 chr6 18545694 18546070 + 2 NA intron (NR_149116, intron 3 of 7) L1M4c|LINE|L1 23135 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 304-493 chr7 121650521 121650698 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -222552 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 553-196 chr5 153059942 153060300 + 2 NA Intergenic LTR39|LTR|ERV1 -87772 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 557-175 chr6 147010812 147011274 + 2 NA intron (NR_034115, intron 5 of 10) L1ME1|LINE|L1 -147882 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 283-208 chr19 36674271 36674525 + 2 NA Intergenic Intergenic -7561 NM_001322823 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 263-157 chr17 70841402 70841593 + 2 NA Intergenic Intergenic 360682 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 497-276 chr8 81577549 81578029 + 2 NA Intergenic Intergenic -46399 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 123-22 chr16 54829441 54829562 + 2 NA Intergenic L1ME2|LINE|L1 18732 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 242-315 chr5 109692221 109692380 + 2 NA intron (NM_002372, intron 1 of 21) intron (NM_002372, intron 1 of 21) 2934 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 292-100 chr12 39738126 39738339 + 2 NA intron (NR_135051, intron 13 of 18) intron (NR_135051, intron 13 of 18) 112049 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 255-44 chr10 126029796 126029966 + 2 NA intron (NM_003474, intron 21 of 22) L1ME4b|LINE|L1 -56608 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 243-315 chr4 31282004 31282219 + 2 NA Intergenic L1MA7|LINE|L1 110967 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 373-229 chr2 227056119 227056393 + 2 NA intron (NM_000092, intron 29 of 47) intron (NM_000092, intron 29 of 47) 108303 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 220-95 chr12 104359073 104359207 + 2 NA Intergenic L1M5|LINE|L1 55401 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 598-124 chr6 141506662 141507018 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR 581959 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 167-32 chr12 130410731 130410892 + 2 NA intron (NM_001351226, intron 18 of 21) L1ME1|LINE|L1 72924 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 239-225 chr21 43950131 43950342 + 2 NA intron (NM_001037553, intron 1 of 8) intron (NM_001037553, intron 1 of 8) 24838 NM_001037553 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 342-121 chr12 115175758 115175955 + 2 NA Intergenic MLT2A2|LTR|ERVL -491681 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 338-64 chr10 60362222 60362501 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 27514 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 123-37 chr4 64739423 64739516 + 2 NA Intergenic L1MEf|LINE|L1 265031 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 541-158 chr3 89300288 89300757 + 2 NA intron (NM_182644, intron 3 of 6) MIR|SINE|MIR 192901 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 159-82 chr6 123227849 123227951 + 2 NA intron (NM_006073, intron 38 of 40) MIR3|SINE|MIR -211704 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 363-206 chr2 49332460 49332725 + 2 NA Intergenic Intergenic -178065 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 519-87 chr18 74320815 74321308 + 2 NA intron (NM_001174123, intron 3 of 13) intron (NM_001174123, intron 3 of 13) 5222 NM_001174123 644041 Hs.465414 NM_001174123 ENSG00000206043 C18orf63 DKFZP781G0119 chromosome 18 open reading frame 63 protein-coding 416-166 chr2 46885064 46885382 + 2 NA Intergenic Intergenic 30583 NM_001171509 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 243-51 chr10 81718777 81718994 + 2 NA Intergenic L1ME1|LINE|L1 -156309 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 219-149 chr18 76114808 76114968 + 2 NA Intergenic L1MC4|LINE|L1 -8110 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 415-114 chr1_KI270759v1_alt 357161 357561 + 2 NA intron (NM_018012, intron 8 of 12) intron (NM_018012, intron 8 of 12) 296225 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 184-77 chr19 43911570 43911717 + 2 NA TTS (NM_003425) TTS (NM_003425) -9840 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 373-175 chr19 36488563 36488904 + 2 NA promoter-TSS (NR_036504) promoter-TSS (NR_036504) 702 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 357-218 chr2 141824037 141824246 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 307560 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 311-175 chr16 47835229 47835478 + 2 NA Intergenic L1M4c|LINE|L1 -23228 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 198-97 chr18 11122923 11123075 + 2 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 25763 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 480-104 chr16 55997724 55998131 + 2 NA Intergenic L1MA5A|LINE|L1 -41896 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 237-345 chr7 17235918 17236118 + 2 NA Intergenic Intergenic -62634 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 574-89 chr2 214184742 214185173 + 2 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -226097 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 412-185 chr20 42914874 42915096 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -53758 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 179-132 chr9 110888376 110888516 + 2 NA intron (NM_001351417, intron 5 of 5) Tigger13a|DNA|TcMar-Tigger 148334 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 360-318 chr4 454126 454395 + 2 NA intron (NM_133474, intron 2 of 2) HERVL66-int|LTR|ERVL 19949 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 254-415 chr8 101562732 101562905 + 2 NA intron (NM_024915, intron 4 of 15) intron (NM_024915, intron 4 of 15) 70379 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 412-140 chr19 20078668 20078971 + 2 NA intron (NM_007138, intron 1 of 3) LTR10B2|LTR|ERV1 819 NM_007138 7643 Hs.55304 NM_007138 ENSG00000213988 ZNF90 HTF9 zinc finger protein 90 protein-coding 160-67 chr3 75749273 75749402 + 2 NA intron (NM_001324028, intron 2 of 5) CER|Satellite|Satellite 11057 NR_036235 100422955 NR_036235 ENSG00000266396 MIR4273 - microRNA 4273 ncRNA 871-28 chr5 45173005 45173693 + 2 NA Intergenic Intergenic 364402 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 343-402 chr4 114296715 114296938 + 2 NA Intergenic L1MA7|LINE|L1 -301576 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 465-305 chr8 134415019 134415415 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -182854 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 332-490 chr7 69182489 69182673 + 2 NA Intergenic L1M6|LINE|L1 415043 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 307-180 chr16 77919778 77920027 + 2 NA intron (NM_020927, intron 7 of 8) AluSx1|SINE|Alu -102646 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 337-259 chr2 101557400 101557677 + 2 NA Intergenic L1MC5|LINE|L1 -82426 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 461-22 chr1 225640225 225640544 + 2 NA intron (NM_001008493, intron 1 of 14) Tigger18a|DNA|TcMar-Tigger 12739 NM_018212 55740 Hs.497893 NM_018212 ENSG00000154380 ENAH ENA|MENA|NDPP1 ENAH actin regulator protein-coding 290-323 chr4 141903330 141903568 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 266866 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 318-538 chr8 70238037 70238343 + 2 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 165200 NM_001321707 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 160-22 chr12 59847866 59847991 + 2 NA Intergenic Intergenic 158558 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 411-134 chr19 31608726 31609103 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 16633 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 354-417 chr6 167672458 167672683 + 2 NA intron (NR_117091, intron 2 of 2) intron (NR_117091, intron 2 of 2) 6653 NR_117091 401286 Hs.487182 NR_117091 ENSG00000272549 LINC02538 - long intergenic non-protein coding RNA 2538 ncRNA 344-231 chr2 37520023 37520283 + 2 NA Intergenic Intergenic 152046 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 256-38 chr10 39361438 39361645 + 2 NA Intergenic ALR/Alpha|Satellite|centr 664945 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 206-179 chr4 45909499 45909631 + 2 NA Intergenic L1ME4b|LINE|L1 214489 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 418-49 chr11 114192458 114192857 + 2 NA intron (NM_006006, intron 4 of 6) MIR1_Amn|SINE|MIR -103156 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 252-172 chr19 31058604 31058754 + 2 NA Intergenic L2b|LINE|L2 -108831 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 594-156 chr8 138378600 138379030 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 118446 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 394-235 chr4 47205665 47206004 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 174267 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 291-359 chr5 89853764 89853943 + 2 NA Intergenic Intergenic 162867 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 257-216 chr2 166285083 166285280 + 2 NA intron (NM_001365536, intron 11 of 26) intron (NM_001365536, intron 11 of 26) 90763 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 394-299 chr7 27313753 27314021 + 2 NA Intergenic L2a|LINE|L2 -66658 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 333-475 chr5 145014553 145014756 + 2 NA Intergenic Intergenic 809263 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 126-9 chr10 77677542 77677632 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -39779 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 251-16 chr1 165005304 165005487 + 2 NA Intergenic L1M4|LINE|L1 -230754 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 192-163 chr5 72646087 72646223 + 2 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 14514 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 569-57 chr14 45779500 45779901 + 2 NA Intergenic L1PA15|LINE|L1 -64098 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 312-371 chr4 58287513 58287744 + 2 NA Intergenic Intergenic 248700 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 490-26 chr1 177869309 177869645 + 2 NA Intergenic L1PA16|LINE|L1 100445 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 278-170 chr18 8677552 8677823 + 2 NA Intergenic L1ME3A|LINE|L1 29934 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 410-244 chr5 75160136 75160484 + 2 NA intron (NM_001164443, intron 11 of 24) L1M4b|LINE|L1 76568 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 328 chr1 5531554 5531756 + 2 NA Intergenic L2b|LINE|L2 331086 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 471-192 chr4 61900474 61900772 + 2 NA intron (NM_001371343, intron 11 of 23) intron (NM_001371343, intron 11 of 23) 261142 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 405-356 chrX 81171893 81172224 + 2 NA intron (NM_030763, intron 1 of 6) intron (NM_030763, intron 1 of 6) 29855 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 383-76 chr12 9957672 9957991 + 2 NA intron (NM_001207010, intron 1 of 6) MER4CL34|LTR|ERV1 -4494 NR_135047 400002 NR_135047 ENSG00000231560 CLEC12A-AS1 - CLEC12A antisense RNA 1 ncRNA 324-66 chr10 81077319 81077547 + 2 NA Intergenic L1PA15|LINE|L1 427636 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 253-252 chr3 40774752 40774934 + 2 NA Intergenic Intergenic 249883 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 395-48 chr10 126615133 126615398 + 2 NA intron (NM_001350922, intron 2 of 8) MLT1H2|LTR|ERVL-MaLR 55245 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 404-7 chr1 55652638 55652957 + 2 NA Intergenic MIR3|SINE|MIR 292166 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 242-407 chr8 121536182 121536416 + 2 NA Intergenic Intergenic -103047 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 187-66 chr16 75030320 75030453 + 2 NA intron (NM_032268, intron 1 of 4) L1M4|LINE|L1 31362 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 600-143 chrX 99042214 99042644 + 2 NA Intergenic L1PB2|LINE|L1 1367844 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 421-289 chr8 21329973 21330202 + 2 NA Intergenic MER4A|LTR|ERV1 31848 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 570-22 chr10 18383004 18383441 + 2 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) -17353 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 368-168 chr16 6185874 6186233 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 166350 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 264-294 chr4 86278201 86278368 + 2 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 76360 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 1047-5 chr12 114128254 114129053 + 2 NA Intergenic Intergenic 113117 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 358-215 chr2 78635147 78635396 + 2 NA Intergenic Intergenic 89740 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 271-200 chr2 74847305 74847461 + 2 NA intron (NM_000189, intron 1 of 17) intron (NM_000189, intron 1 of 17) 14728 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 644-83 chr6 38758765 38759282 + 2 NA intron (NM_001371, intron 9 of 91) AluJr4|SINE|Alu 43712 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 255-11 chr1 158466245 158466436 + 2 NA exon (NM_001004473, exon 1 of 1) exon (NM_001004473, exon 1 of 1) 778 NM_001004473 391109 Hs.690410 NM_001004473 ENSG00000173285 OR10K1 OR1-6 olfactory receptor family 10 subfamily K member 1 protein-coding 340-179 chr15 92255056 92255226 + 2 NA Intergenic L1ME3F|LINE|L1 -138740 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 357-240 chr20 41999753 41999944 + 2 NA Intergenic L1M2|LINE|L1 -381471 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 343-136 chr14 46618841 46619136 + 2 NA Intergenic L1M2|LINE|L1 32793 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 366-439 chr8 78357656 78358002 + 2 NA Intergenic L1ME4b|LINE|L1 -158511 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 382-353 chr6 51371630 51371896 + 2 NA Intergenic L1MEj|LINE|L1 -250107 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 401-70 chr12 117902992 117903250 + 2 NA intron (NM_173598, intron 1 of 19) intron (NM_173598, intron 1 of 19) 65869 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 277-319 chr5 51090122 51090302 + 2 NA Intergenic Intergenic -120025 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 113-50 chr7 88735733 88735802 + 2 NA Intergenic (TATTAA)n|Simple_repeat|Simple_repeat -23933 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 430-298 chr7 112312350 112312733 + 2 NA intron (NM_021994, intron 4 of 11) L1MC4|LINE|L1 105846 NM_021994 11179 Hs.655904 NM_021994 ENSG00000198839 ZNF277 NRIF4|ZNF277P zinc finger protein 277 protein-coding 223-276 chr5 44746510 44746676 + 2 NA intron (NR_109865, intron 1 of 2) intron (NR_109865, intron 1 of 2) 62200 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 283-386 chr5 171563498 171563666 + 2 NA Intergenic L1ME1|LINE|L1 143935 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 385-182 chr2 126801067 126801361 + 2 NA Intergenic Intergenic -97676 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 406-27 chr1 226734123 226734461 + 2 NA intron (NM_002221, intron 2 of 7) intron (NM_002221, intron 2 of 7) 4883 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 211-82 chr14 30003369 30003537 + 2 NA Intergenic Intergenic -75606 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 245-349 chr8 98839541 98839737 + 2 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) -13951 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 500-247 chr6 77167469 77167840 + 2 NA Intergenic L1PA15-16|LINE|L1 296368 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 534-105 chr2 17174535 17174924 + 2 NA Intergenic Intergenic 343711 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 329-81 chr10 114932518 114932806 + 2 NA Intergenic L3|LINE|CR1 -5533 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 405-14 chr1 177644508 177644830 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -55855 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 113-29 chr2 107429091 107429155 + 2 NA Intergenic Intergenic -79598 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 483-163 chr3 33464332 33464631 + 2 NA Intergenic MER4E1|LTR|ERV1 -24076 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 236-104 chr13 82023941 82024133 + 2 NA Intergenic L1M3|LINE|L1 -797054 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 307-426 chr6 62356716 62356992 + 2 NA Intergenic L1PA16|LINE|L1 -70627 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 402-10 chr1 95545476 95545827 + 2 NA Intergenic Intergenic 35535 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 359-335 chr3 153652699 153652884 + 2 NA intron (NR_146713, intron 3 of 6) intron (NR_146713, intron 3 of 6) 109735 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 239-33 chr10 47036921 47037089 + 2 NA Intergenic Intergenic 125283 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 212-158 chr2 83299639 83299815 + 2 NA Intergenic Intergenic -223087 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 532-127 chr2 103691421 103691848 + 2 NA Intergenic L1ME4c|LINE|L1 -707205 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 282-236 chr2 164882330 164882596 + 2 NA Intergenic Intergenic -40387 NM_001278458 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 271-400 chr7 30761970 30762111 + 2 NA intron (NR_037598, intron 2 of 19) MLT1J|LTR|ERVL-MaLR -9377 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 452-287 chr9 27861065 27861414 + 2 NA Intergenic Intergenic -287373 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 580-111 chr3 33912986 33913427 + 2 NA Intergenic L2a|LINE|L2 114576 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 360-401 chr6 54324053 54324315 + 2 NA intron (NM_014464, intron 3 of 10) MLT1H|LTR|ERVL-MaLR 15743 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 350-12 chr1 95444982 95445303 + 2 NA Intergenic L1MA4|LINE|L1 -29595 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 285-14 chr1 113159689 113159919 + 2 NA Intergenic L1MC1|LINE|L1 46449 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 786-57 chr6 40109460 40109862 + 2 NA Intergenic LTR33A|LTR|ERVL -175199 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 490-7 chr1 65970365 65970752 + 2 NA intron (NM_002600, intron 3 of 16) L2c|LINE|L2 -22058 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 254-316 chr5 112287557 112287756 + 2 NA intron (NM_001347887, intron 2 of 23) L2|LINE|L2 59373 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 488-26 chr10 44162961 44163318 + 2 NA Intergenic L1M4|LINE|L1 -129611 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 231-20 chr1 173291420 173291581 + 2 NA intron (NR_037845, intron 2 of 2) L1PA16|LINE|L1 -84169 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 458-166 chr3 10560130 10560476 + 2 NA intron (NM_001353564, intron 1 of 20) intron (NM_001353564, intron 1 of 20) -54717 NM_001683 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 289-329 chr4 13147745 13147916 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 336510 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 294-215 chr2 70380457 70380722 + 2 NA Intergenic L1MB8|LINE|L1 -78522 NM_001329752 84908 Hs.516077 NM_032822 ENSG00000035141 FAM136A - family with sequence similarity 136 member A protein-coding 273-95 chr12 17235140 17235359 + 2 NA Intergenic L2a|LINE|L2 246502 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 199-27 chr10 83029221 83029346 + 2 NA Intergenic Intergenic 647806 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 378-37 chr1 212904793 212905026 + 2 NA Intergenic L1M3c|LINE|L1 -45632 NM_001301056 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 327-442 chr6 140014307 140014553 + 2 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -23169 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 537-238 chr7 64974529 64974920 + 2 NA 3' UTR (NM_015852, exon 4 of 4) 3' UTR (NM_015852, exon 4 of 4) 16312 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 246-295 chr4 63251422 63251661 + 2 NA Intergenic Intergenic -1089776 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 418-249 chr6 144168865 144169137 + 2 NA intron (NM_003764, intron 1 of 1) Tigger4|DNA|TcMar-Tigger 18484 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 277-2 chr1 18327613 18327822 + 2 NA intron (NM_032880, intron 3 of 9) L1ME1|LINE|L1 -153213 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 221-227 chr4 122340847 122341007 + 2 NA intron (NM_015312, intron 70 of 83) intron (NM_015312, intron 70 of 83) -38084 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 565-184 chr8 116372377 116372829 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -47544 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 468-107 chr17 14279395 14279680 + 2 NA Intergenic L2b|LINE|L2 -21544 NR_130138 9953 Hs.48384 NM_006041 ENSG00000125430 HS3ST3B1 3-OST-3B|3OST3B1|h3-OST-3B heparan sulfate-glucosamine 3-sulfotransferase 3B1 protein-coding 389-345 chr7 57260877 57261102 + 2 NA Intergenic Intergenic -38815 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 342-130 chr13 74271689 74271973 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 40387 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 144-99 chr8 85365283 85365404 + 2 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) 12770 NM_001291968 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 375-211 chr2 74956148 74956477 + 2 NA Intergenic MER50|LTR|ERV1 -2331 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 438-113 chr2 35744899 35745153 + 2 NA Intergenic L1MB8|LINE|L1 273621 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 810-62 chrX 123537154 123537917 + 2 NA Intergenic L1M1|LINE|L1 195517 NM_001081550 57187 Hs.149991 NM_020449 ENSG00000125676 THOC2 CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 417-266 chr7 69540681 69540959 + 2 NA Intergenic Intergenic 56804 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 166-52 chr2 79337693 79337851 + 2 NA Intergenic L2a|LINE|L2 163072 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 230-236 chr3 103898271 103898494 + 2 NA Intergenic Intergenic -374266 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 279-93 chr13 76831469 76831681 + 2 NA Intergenic Intergenic 54830 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 228-209 chr3 5484782 5484987 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -234629 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 283-137 chr14 72902785 72903021 + 2 NA Intergenic L1MB8|LINE|L1 -8787 NM_001280542 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 587-97 chr22 24865818 24866246 + 2 NA intron (NM_001098498, intron 9 of 23) LTR16B|LTR|ERVL 59811 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 239-437 chr9 93273390 93273548 + 2 NA intron (NM_001282394, intron 19 of 29) L1ME1|LINE|L1 72834 NM_001368813 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 291-17 chr1 114814096 114814321 + 2 NA Intergenic Intergenic -33523 NM_025073 80143 Hs.709277 NM_025073 ENSG00000052723 SIKE1 SIKE suppressor of IKBKE 1 protein-coding 525-142 chr20 61712015 61712432 + 2 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 7525 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 289-429 chr7 7164779 7164979 + 2 NA Intergenic LTR16A|LTR|ERVL -17736 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 358-306 chr3 121333539 121333747 + 2 NA intron (NM_001348343, intron 21 of 27) L1PREC2|LINE|L1 212345 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 600-70 chr2 139912328 139912799 + 2 NA Intergenic L1PA4|LINE|L1 674122 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 382-301 chr4 78652092 78652445 + 2 NA intron (NR_038306, intron 2 of 2) intron (NR_038306, intron 2 of 2) 6274 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 707-29 chr14 87686919 87687335 + 2 NA Intergenic Intergenic -31833 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 199-186 chr4 111715811 111715977 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -429560 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 282-111 chr13 54595858 54596079 + 2 NA Intergenic L1PA15|LINE|L1 -283920 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 450-137 chr2 57521019 57521330 + 2 NA Intergenic L1MA3|LINE|L1 -386477 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 338-265 chr2 116230993 116231271 + 2 NA Intergenic L1P4|LINE|L1 887317 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 467-278 chr8 65778491 65778794 + 2 NA intron (NM_001242318, intron 3 of 12) LTR40c|LTR|ERVL 10415 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 325-547 chr8 119705221 119705452 + 2 NA Intergenic L2a|LINE|L2 -31946 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 376-161 chr19 34450500 34450726 + 2 NA intron (NM_005499, intron 9 of 16) intron (NM_005499, intron 9 of 16) 22232 NM_005499 10054 Hs.631580 NM_005499 ENSG00000126261 UBA2 ARX|HRIHFB2115|SAE2 ubiquitin like modifier activating enzyme 2 protein-coding 422-13 chr1 114696025 114696360 + 2 NA promoter-TSS (NM_000036) promoter-TSS (NM_000036) -574 NM_001172626 270 Hs.89570 NM_000036 ENSG00000116748 AMPD1 MAD|MADA|MMDD adenosine monophosphate deaminase 1 protein-coding 418-248 chr6 136060202 136060517 + 2 NA intron (NR_149042, intron 3 of 3) intron (NR_149042, intron 3 of 3) 12468 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 308-221 chr2 34683322 34683585 + 2 NA intron (NR_126404, intron 1 of 2) intron (NR_126404, intron 1 of 2) 5896 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 458-65 chr14 20974585 20974916 + 2 NA Intergenic Intergenic -15230 NM_001029991 64745 Hs.512693 NM_022734 ENSG00000165792 METTL17 METT11D1 methyltransferase like 17 protein-coding 335-550 chr8 134192756 134192930 + 2 NA Intergenic Intergenic 306347 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 334-443 chr5 147396038 147396338 + 2 NA intron (NM_001197294, intron 12 of 13) intron (NM_001197294, intron 12 of 13) 57504 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 322-545 chr8 126705601 126705794 + 2 NA Intergenic MLT2D|LTR|ERVL -147219 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 182-143 chr5 123850128 123850295 + 2 NA Intergenic L1MA4|LINE|L1 304794 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 207-175 chr22 28576029 28576153 + 2 NA intron (NM_001145418, intron 2 of 22) L1MA3|LINE|L1 103774 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 316-143 chr12 115302238 115302432 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -618160 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 387-26 chr1 240201443 240201747 + 2 NA intron (NM_001348094, intron 4 of 14) intron (NM_001348094, intron 4 of 14) 109712 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 371-399 chr8 137028323 137028512 + 2 NA Intergenic MIRc|SINE|MIR 385171 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 352-430 chr5 125512939 125513173 + 2 NA intron (NR_109887, intron 2 of 3) intron (NR_109887, intron 2 of 3) 19795 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 651-118 chr8 86739358 86739902 + 2 NA intron (NM_019098, intron 2 of 17) (T)n|Simple_repeat|Simple_repeat 4045 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 836-27 chr18 22019368 22019978 + 2 NA Intergenic MIR|SINE|MIR 149295 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 251-213 chr21 30269673 30269869 + 2 NA Intergenic Intergenic 13179 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 262-214 chr2 107327411 107327658 + 2 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 21991 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 243-284 chr3 85135163 85135323 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -72979 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 300-413 chr7 4901501 4901701 + 2 NA intron (NR_072989, intron 8 of 8) MIR|SINE|MIR -17885 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 388-113 chr14 72336690 72337002 + 2 NA intron (NM_001370288, intron 2 of 16) MLT1B|LTR|ERVL-MaLR -179974 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 293-438 chr8 88926737 88926994 + 2 NA Intergenic Intergenic -599382 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 655-131 chr8 128499505 128499956 + 2 NA intron (NR_121672, intron 2 of 7) MIR3|SINE|MIR 64949 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 332-471 chr7 24956327 24956580 + 2 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 23725 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 237-279 chr4 174319506 174319653 + 2 NA 3' UTR (NM_001040157, exon 12 of 12) 3' UTR (NM_001040157, exon 12 of 12) -35328 NM_012180 26269 Hs.76917 NM_012180 ENSG00000164117 FBXO8 DC10|FBS|FBX8 F-box protein 8 protein-coding 532-122 chr2 79414103 79414479 + 2 NA Intergenic Intergenic 86553 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 454-279 chr6 133801911 133802270 + 2 NA intron (NR_109982, intron 2 of 8) L1M2|LINE|L1 -19057 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 348-40 chr1 237843596 237843918 + 2 NA Intergenic L1PA14|LINE|L1 -18418 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 526-152 chr20 41970588 41970955 + 2 NA Intergenic L2a|LINE|L2 -352394 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 279-116 chr15 66901797 66902067 + 2 NA Intergenic Intergenic 54583 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 232-104 chr14 78474105 78474279 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 70473 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 536-3 chr1 50224574 50225037 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 114972 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 449-218 chr5 119936971 119937272 + 2 NA Intergenic L1MEc|LINE|L1 307562 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 491-161 chr3 1681139 1681607 + 2 NA Intergenic L1M6|LINE|L1 -417430 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 548-206 chr7 22290854 22291333 + 2 NA intron (NM_012294, intron 6 of 25) intron (NM_012294, intron 6 of 25) 66061 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 318-209 chr17 69995927 69996121 + 2 NA Intergenic Intergenic 34317 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 357-233 chr2 234642874 234643118 + 2 NA Intergenic Intergenic -39672 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 433-185 chr3 186351577 186351944 + 2 NA intron (NM_001346, intron 1 of 24) intron (NM_001346, intron 1 of 24) 10474 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 354-40 chr10 12010834 12011120 + 2 NA intron (NM_080599, intron 4 of 21) L1MEc|LINE|L1 31832 NM_015542 26019 Hs.370689 NM_015542 ENSG00000151461 UPF2 HUPF2|RENT2|smg-3 UPF2 regulator of nonsense mediated mRNA decay protein-coding 316-117 chr11 114910807 114911099 + 2 NA Intergenic L1PB4|LINE|L1 232426 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 410-311 chr8 100391532 100391891 + 2 NA Intergenic Intergenic 8948 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 283-36 chr1 216974009 216974180 + 2 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) -34421 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 428-225 chr5 20490141 20490458 + 2 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 85414 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 405-302 chr7 51352639 51352992 + 2 NA Intergenic Intergenic -35954 NM_001346444 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 241-129 chr15 99394054 99394277 + 2 NA Intergenic AluJr|SINE|Alu 136640 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 582-139 chr6 140417079 140417595 + 2 NA Intergenic L1MA9|LINE|L1 212085 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 188-221 chr9 92844808 92844966 + 2 NA 3' UTR (NM_031486, exon 5 of 5) 3' UTR (NM_031486, exon 5 of 5) 33081 NM_001354536 83744 Hs.668378 NM_031486 ENSG00000127081 ZNF484 BA526D8.4 zinc finger protein 484 protein-coding 194-73 chr16 76773369 76773523 + 2 NA Intergenic Intergenic -95490 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 243-389 chr6 68167239 68167405 + 2 NA Intergenic Intergenic 111971 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 276-410 chr6 118058223 118058435 + 2 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) -27574 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 688-12 chr10 26139608 26140282 + 2 NA intron (NM_017433, intron 20 of 34) L1M5|LINE|L1 -76362 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 263-108 chr14 58277663 58277882 + 2 NA intron (NR_029435, intron 2 of 3) FAM|SINE|Alu -10261 NR_146595 55451 NR_146595 ENSG00000279636 LINC00216 C14orf107|NCRNA00216|PRO1617 long intergenic non-protein coding RNA 216 ncRNA 307-230 chr2 51349084 51349385 + 2 NA intron (NR_135237, intron 3 of 10) L1ME1|LINE|L1 316633 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 519-65 chr15 27613009 27613513 + 2 NA Intergenic L1MC3|LINE|L1 -451942 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 192-189 chr7 26872271 26872402 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -7746 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 204-154 chr2 157683160 157683280 + 2 NA Intergenic Intergenic -54356 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 327-150 chr14 58826759 58826931 + 2 NA Intergenic Intergenic -1443 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 337-606 chrX 138588259 138588445 + 2 NA Intergenic L1M4|LINE|L1 79441 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 335-326 chr22 43400778 43400960 + 2 NA intron (NR_146918, intron 1 of 3) MIRb|SINE|MIR 538 NR_146918 105373054 NR_146918 ENSG00000236117 LINC01639 - long intergenic non-protein coding RNA 1639 ncRNA 149-97 chr7 118523190 118523336 + 2 NA Intergenic Intergenic 298559 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 211-264 chr6 152115485 152115652 + 2 NA intron (NM_001328100, intron 6 of 6) intron (NM_001328100, intron 6 of 6) 52719 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 298-95 chr12 33193592 33193808 + 2 NA Intergenic L1PB4|LINE|L1 246119 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 410-8 chr1 96441346 96441574 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -67335 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 134-71 chr5 124688707 124688806 + 2 NA intron (NM_020747, intron 2 of 8) L1ME4c|LINE|L1 56356 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 202-167 chr3 82398823 82398982 + 2 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 412760 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 517-242 chr6 164391813 164392192 + 2 NA Intergenic L1ME1|LINE|L1 430061 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 285-133 chr15 58763883 58764142 + 2 NA Intergenic Intergenic 6962 NR_135474 101928725 Hs.572321 NR_135474 ENSG00000245975 LOC101928725 - uncharacterized LOC101928725 ncRNA 349-158 chr14 53324482 53324683 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 171228 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 324-73 chr10 117939442 117939608 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy -107296 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 112-55 chrX 64990947 64991048 + 2 NA intron (NM_001178032, intron 1 of 4) MIRc|SINE|MIR -14464 NM_001178033 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 218-21 chr10 5990437 5990574 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -11764 NM_001351095 3601 Hs.445124 NM_002189 ENSG00000134470 IL15RA CD215 interleukin 15 receptor subunit alpha protein-coding 329-546 chr7 89405520 89405708 + 2 NA Intergenic Intergenic -609877 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 328-629 chrX 55898649 55898898 + 2 NA Intergenic L1PA7|LINE|L1 -9350 NM_001324105 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 344-270 chr20 8965054 8965356 + 2 NA Intergenic Intergenic -103849 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 291-381 chr6 63416935 63417159 + 2 NA Intergenic LTR50|LTR|ERVL -97064 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 318-432 chr5 17325307 17325496 + 2 NA Intergenic Intergenic 61909 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 361-274 chr3 21897738 21898077 + 2 NA Intergenic (ATTTGTT)n|Simple_repeat|Simple_repeat -59232 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 282-176 chr18 36558428 36558693 + 2 NA intron (NM_001281740, intron 5 of 28) L1ME4c|LINE|L1 104858 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 207-52 chr11 25493298 25493450 + 2 NA Intergenic Intergenic -695749 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 459-183 chr3 42456966 42457370 + 2 NA Intergenic L1MEc|LINE|L1 -32131 NM_001251882 7433 Hs.348500 NM_004624 ENSG00000114812 VIPR1 HVR1|II|PACAP-R-2|PACAP-R2|RDC1|V1RG|VAPC1|VIP-R-1|VIPR|VIRG|VPAC1|VPAC1R|VPCAP1R vasoactive intestinal peptide receptor 1 protein-coding 344-253 chr2 150820302 150820601 + 2 NA Intergenic Intergenic 191554 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 212-157 chr2 83247734 83247917 + 2 NA Intergenic L1MB7|LINE|L1 -274989 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 359-436 chr6 155364399 155364636 + 2 NA Intergenic Intergenic -50033 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 507-11 chr1 168891246 168891678 + 2 NA Intergenic L1ME1|LINE|L1 104521 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 751-85 chr9 113040044 113040545 + 2 NA 3' UTR (NM_001282515, exon 4 of 4) 3' UTR (NM_001282515, exon 4 of 4) 16430 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 399-62 chr11 85193302 85193528 + 2 NA intron (NM_001142699, intron 4 of 27) L1MB7|LINE|L1 -269994 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 365-114 chr13 88121695 88122058 + 2 NA Intergenic L1PA16|LINE|L1 -20991 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 279-276 chr3 162619490 162619724 + 2 NA Intergenic L1MA1|LINE|L1 683694 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 382-235 chr20 12523248 12523485 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner 413597 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 439-134 chr2 74751913 74752278 + 2 NA Intergenic L1M6|LINE|L1 -80560 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 683-92 chr8 129074638 129075170 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -108903 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 227-375 chr8 114337068 114337246 + 2 NA Intergenic L2a|LINE|L2 -900218 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 572-46 chr12 129043571 129043966 + 2 NA Intergenic L1M2|LINE|L1 -65922 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 232-15 chr1 166520951 166521150 + 2 NA Intergenic L2|LINE|L2 -31011 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 471-60 chr12 20504330 20504648 + 2 NA intron (NM_000921, intron 1 of 15) MLT1D|LTR|ERVL-MaLR -67375 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 578-5 chr1 56023621 56023949 + 2 NA Intergenic MIR3|SINE|MIR 78698 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 214-61 chr11 15625633 15625798 + 2 NA Intergenic Intergenic -18170 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 479-40 chr12 40965158 40965444 + 2 NA intron (NM_001843, intron 15 of 23) intron (NM_001843, intron 15 of 23) 56944 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 474-136 chr2 63766485 63766853 + 2 NA Intergenic L1ME1|LINE|L1 -74295 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 122-54 chr8 36838262 36838333 + 2 NA intron (NM_001031836, intron 14 of 26) intron (NM_001031836, intron 14 of 26) 53923 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 265-100 chr14 43834511 43834724 + 2 NA Intergenic Intergenic 672666 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 392-358 chrX 48054408 48054727 + 2 NA Intergenic L1MEg|LINE|L1 -1743 NR_046742 100874120 Hs.618606 NR_046742 ZNF630-AS1 - ZNF630 antisense RNA 1 ncRNA 470-54 chr12 79023063 79023459 + 2 NA intron (NM_001291901, intron 2 of 9) LTR78|LTR|ERV1 -22431 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 195-2 chr1 19939080 19939250 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -15548 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 269-36 chr10 10937365 10937538 + 2 NA intron (NR_024411, intron 3 of 3) intron (NR_024411, intron 3 of 3) 14712 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 493-147 chr2 71236130 71236423 + 2 NA Intergenic HAL1|LINE|L1 -9173 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 617-99 chr4 154029236 154029634 + 2 NA Intergenic Intergenic -240352 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 306-273 chr20 9714480 9714736 + 2 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 124468 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 298-87 chr12 11692506 11692688 + 2 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 42743 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 327-299 chr20 52107320 52107559 + 2 NA intron (NM_199427, intron 5 of 8) L1ME3F|LINE|L1 -1955 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 600-118 chr7 64478573 64479108 + 2 NA Intergenic L1MA8|LINE|L1 45147 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 300-205 chr2 113724208 113724452 + 2 NA intron (NM_001330315, intron 13 of 16) intron (NM_001330315, intron 13 of 16) -2962 NR_039943 100616208 NR_039943 ENSG00000265429 MIR4782 - microRNA 4782 ncRNA 355-448 chr6 148931848 148932088 + 2 NA intron (NM_005715, intron 2 of 7) intron (NM_005715, intron 2 of 7) 32716 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 351-284 chr22 34284962 34285269 + 2 NA Intergenic Intergenic -362227 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 675-86 chr7 46476736 46477152 + 2 NA Intergenic Intergenic 220178 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 343-584 chr9 99092824 99093159 + 2 NA Intergenic Intergenic -12122 NM_001306210 7046 Hs.494622 NM_004612 ENSG00000106799 TGFBR1 AAT5|ACVRLK4|ALK-5|ALK5|ESS1|LDS1|LDS1A|LDS2A|MSSE|SKR4|TBR-i|TBRI|TGFR-1|tbetaR-I transforming growth factor beta receptor 1 protein-coding 342-124 chr12 120862576 120862800 + 2 NA intron (NM_139015, intron 1 of 10) MER21C|LTR|ERVL 41670 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 156-52 chr2 77764784 77764927 + 2 NA intron (NR_110288, intron 3 of 3) intron (NR_110288, intron 3 of 3) -151079 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 285-143 chr16 51027467 51027693 + 2 NA intron (NR_110913, intron 2 of 2) L1MB7|LINE|L1 9822 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 285-257 chr3 1043721 1043991 + 2 NA Intergenic L1MB4|LINE|L1 -49168 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 324-127 chr12 106619831 106620017 + 2 NA intron (NM_001206691, intron 2 of 17) L1ME3|LINE|L1 18776 NM_001206691 5992 Hs.388827 NM_002920 ENSG00000111783 RFX4 NYD-SP10 regulatory factor X4 protein-coding 443-283 chr7 88359259 88359635 + 2 NA Intergenic Intergenic -52553 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 542-55 chr14 51023069 51023604 + 2 NA intron (NM_015163, intron 2 of 9) intron (NM_015163, intron 2 of 9) 72368 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 784-50 chr5 35634708 35635221 + 2 NA intron (NM_144722, intron 2 of 9) L1MC3|LINE|L1 17101 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 278-70 chr12 30201867 30202093 + 2 NA Intergenic Intergenic -417221 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 399-23 chr1 219723874 219724138 + 2 NA Intergenic L1M2c|LINE|L1 -110861 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 260-74 chr11 29528002 29528191 + 2 NA Intergenic Intergenic -66317 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 418-30 chr10 43970058 43970342 + 2 NA TTS (NR_033846) TTS (NR_033846) 57798 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 386-185 chr2 147220263 147220624 + 2 NA Intergenic MER41-int|LTR|ERV1 -624074 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 453-195 chr5 8800397 8800827 + 2 NA Intergenic L1M3de|LINE|L1 -39120 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 499-200 chr5 30188635 30189099 + 2 NA Intergenic Intergenic 308307 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 286-415 chr7 41209104 41209276 + 2 NA Intergenic L1ME3|LINE|L1 107586 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 266-445 chr9 27223044 27223239 + 2 NA intron (NM_001290077, intron 20 of 21) L1PA7|LINE|L1 59652 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 212-314 chr7 138369443 138369602 + 2 NA Intergenic LTR8B|LTR|ERV1 -90737 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 227-37 chr10 56476653 56476785 + 2 NA Intergenic L1MC5|LINE|L1 -115446 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 380-334 chr6 40147088 40147443 + 2 NA Intergenic L1PREC2|LINE|L1 208741 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 340-75 chr11 45701687 45701867 + 2 NA Intergenic MIRc|SINE|MIR -10001 NR_106976 102465691 NR_106976 ENSG00000276639 MIR7154 hsa-mir-7154 microRNA 7154 ncRNA 339-461 chr5 128732883 128733059 + 2 NA Intergenic HERVH-int|LTR|ERV1 -194726 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 231-332 chr7 47117806 47117964 + 2 NA Intergenic MIRb|SINE|MIR 346918 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 375-369 chr7 26978398 26978760 + 2 NA Intergenic AluJr|SINE|Alu -113989 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 129-47 chr2 221682657 221682734 + 2 NA Intergenic Intergenic -108493 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 329-29 chr1 197681574 197681836 + 2 NA intron (NR_125340, intron 3 of 19) intron (NR_125340, intron 3 of 19) 93775 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 550-210 chr7 19823650 19824067 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger -50241 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 441-224 chr6 67439345 67439585 + 2 NA Intergenic Intergenic -615886 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 186-88 chr2 122622046 122622184 + 2 NA Intergenic L1MEi|LINE|L1 451366 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 444-52 chr12 40816438 40816732 + 2 NA intron (NM_001256063, intron 1 of 15) L1PA10|LINE|L1 -11353 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 570-97 chr18 49145269 49145666 + 2 NA intron (NM_001353210, intron 14 of 16) L1MC5a|LINE|L1 -95699 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 501-52 chr12 54783404 54783690 + 2 NA Intergenic L1M2|LINE|L1 -70969 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 471-181 chr4 365375 365761 + 2 NA intron (NM_003441, intron 3 of 3) L1M2|LINE|L1 15411 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 250-49 chr10 85199307 85199499 + 2 NA promoter-TSS (NR_120668) promoter-TSS (NR_120668) -465 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 207-15 chr1 114989371 114989573 + 2 NA intron (NR_104211, intron 31 of 32) L1M4c|LINE|L1 -40352 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 560-200 chrX 45387609 45387998 + 2 NA Intergenic L1MA7|LINE|L1 -117585 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 768-26 chr17 70864304 70864948 + 2 NA Intergenic Plat_L3|LINE|CR1 337553 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 261-263 chr3 177552294 177552515 + 2 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 110483 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 562-111 chr2 107563493 107563883 + 2 NA Intergenic Intergenic 34269 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 269-295 chr4 144563992 144564200 + 2 NA Intergenic Intergenic 81923 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 292-221 chr2 103621241 103621450 + 2 NA Intergenic L1PA16|LINE|L1 -636916 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 429-143 chr2 23118110 23118390 + 2 NA Intergenic MIRb|SINE|MIR -266929 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 322-146 chr13 70971070 70971343 + 2 NA Intergenic Intergenic -43935 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 390-128 chr16 48753979 48754201 + 2 NA Intergenic L1MA5A|LINE|L1 -143910 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 267-287 chr4 33884435 33884667 + 2 NA Intergenic Intergenic 155342 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 554-82 chr14 84995399 84995829 + 2 NA Intergenic L1ME3E|LINE|L1 -276318 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 211-229 chr5 30420697 30420816 + 2 NA Intergenic L1MEc|LINE|L1 540196 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 308-161 chr15 77311722 77311996 + 2 NA intron (NM_024776, intron 1 of 7) L2|LINE|L2 -86455 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 309-540 chr8 77720666 77720841 + 2 NA Intergenic Intergenic 270056 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 155-56 chr2 129014432 129014564 + 2 NA Intergenic Intergenic 149898 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 473-295 chr9 83093874 83094189 + 2 NA Intergenic Intergenic -30889 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 276-92 chr11 111657345 111657586 + 2 NA intron (NM_015191, intron 3 of 14) AluJr|SINE|Alu 55016 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 255-189 chr2 35764162 35764406 + 2 NA Intergenic L1MCa|LINE|L1 292879 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 366-379 chr6 120461692 120461914 + 2 NA Intergenic MLT2C2|LTR|ERVL 446624 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 602-120 chr6 144914741 144915180 + 2 NA Intergenic L1ME4b|LINE|L1 509305 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 544-147 chr3 46436889 46437283 + 2 NA intron (NM_001321122, intron 19 of 19) intron (NM_001321122, intron 19 of 19) -13419 NR_151704 105377068 NR_151704 ENSG00000283646 LINC02009 - long intergenic non-protein coding RNA 2009 ncRNA 324-527 chr8 81451746 81451919 + 2 NA Intergenic L1MEg|LINE|L1 -4393 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 490-47 chr10 129479305 129479729 + 2 NA intron (NM_002412, intron 1 of 4) intron (NM_002412, intron 1 of 4) 12276 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 426-214 chr4 154056026 154056300 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -267080 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 455-23 chr10 12656648 12656925 + 2 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) -3589 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 451-27 chr10 43866873 43867124 + 2 NA intron (NR_038268, intron 2 of 4) intron (NR_038268, intron 2 of 4) 7587 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 585-159 chr8 82131873 82132233 + 2 NA Intergenic L1PB1|LINE|L1 -289767 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 408-126 chr16 12370728 12371091 + 2 NA intron (NM_032167, intron 16 of 20) intron (NM_032167, intron 16 of 20) -349412 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 742-25 chr14 62339350 62339852 + 2 NA Intergenic Intergenic -199628 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 208-280 chr9 28570116 28570284 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 149105 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 146-49 chr20 40522039 40522126 + 2 NA Intergenic Intergenic 167154 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 581-85 chr2 170257706 170258112 + 2 NA intron (NM_001083615, intron 7 of 33) L1PA16|LINE|L1 79762 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 398-256 chr5 7008372 7008597 + 2 NA Intergenic Intergenic -180563 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 304-143 chr14 53762444 53762612 + 2 NA Intergenic L1ME1|LINE|L1 185956 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 316-527 chr7 114109704 114109961 + 2 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 23505 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 284-383 chr7 53036235 53036470 + 2 NA exon (NM_182595, exon 1 of 1) exon (NM_182595, exon 1 of 1) 719 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 773-5 chr11 12609639 12610053 + 2 NA Intergenic L1PB1|LINE|L1 -64575 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 386-379 chr9 80706983 80707348 + 2 NA Intergenic MER77B|LTR|ERVL 732142 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 348-437 chr5 164894859 164895089 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 424695 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 354-344 chr4 101016196 101016419 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 224565 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 351-146 chr15 71167420 71167739 + 2 NA intron (NR_120349, intron 1 of 1) intron (NR_120349, intron 1 of 1) 21480 NR_120350 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 320-566 chr8 119105876 119106175 + 2 NA exon (NM_006438, exon 6 of 6) exon (NM_006438, exon 6 of 6) -37243 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 406-156 chr2 179600260 179600564 + 2 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) -14506 NM_001282725 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 207-113 chr18 69154487 69154650 + 2 NA Intergenic L2a|LINE|L2 -246320 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 271-381 chr6 69043331 69043583 + 2 NA intron (NM_001704, intron 13 of 31) intron (NM_001704, intron 13 of 31) 408175 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 343-120 chr13 33980592 33980859 + 2 NA Intergenic Intergenic 162576 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 390-247 chr3 105129317 105129607 + 2 NA Intergenic L1PA16|LINE|L1 -237251 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 442-171 chr21 42422842 42423088 + 2 NA intron (NM_018961, intron 7 of 14) L1ME4b|LINE|L1 19063 NM_001243467 53347 Hs.473912 NM_018961 ENSG00000160185 UBASH3A CLIP4|STS-2|TULA|TULA-1 ubiquitin associated and SH3 domain containing A protein-coding 174-5 chr1 160744917 160745043 + 2 NA intron (NM_001282593, intron 1 of 3) intron (NM_001282593, intron 1 of 3) 5733 NM_021181 57823 Hs.517265 NM_021181 ENSG00000026751 SLAMF7 19A|CD319|CRACC|CS1 SLAM family member 7 protein-coding 282-435 chr7 92410850 92411036 + 2 NA Intergenic FLAM_C|SINE|Alu 26371 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 314-426 chr4 62716308 62716468 + 2 NA Intergenic L1M2|LINE|L1 -554623 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 433-165 chr22 36640883 36641155 + 2 NA intron (NM_006078, intron 1 of 3) L2a|LINE|L2 61839 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 543-41 chr10 92832079 92832442 + 2 NA intron (NM_001319194, intron 1 of 22) L2c|LINE|L2 1152 NM_001319194 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 299-379 chr5 105635387 105635559 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 535999 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 290-88 chr11 96870015 96870298 + 2 NA Intergenic MER76|LTR|ERVL 361731 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 487-178 chr3 9624417 9624749 + 2 NA Intergenic L1MC5a|LINE|L1 -24922 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 406-8 chr1 73529732 73530107 + 2 NA Intergenic L3|LINE|CR1 -144760 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 403-164 chr2 132484028 132484304 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 50455 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 506-296 chr8 136341025 136341462 + 2 NA Intergenic L1ME2|LINE|L1 -189555 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 213-10 chr1 87759025 87759178 + 2 NA Intergenic Intergenic -387446 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 333-410 chr4 126245751 126246006 + 2 NA Intergenic L1PB1|LINE|L1 738619 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 389-296 chr5 118389392 118389711 + 2 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 106977 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 361-178 chr17 83185264 83185497 + 2 NA Intergenic Intergenic -41517 NR_029406 388574 Hs.546918 NR_029406 ENSG00000232938 RPL23AP87 - ribosomal protein L23a pseudogene 87 pseudo 287-429 chr9 27220111 27220371 + 2 NA intron (NM_001290077, intron 20 of 21) intron (NM_001290077, intron 20 of 21) 62552 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 662-78 chr5 129814357 129814848 + 2 NA Intergenic MER21A|LTR|ERVL 66508 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 425-99 chr15 65040160 65040427 + 2 NA Intergenic AluSc|SINE|Alu -5094 NM_178859 123264 Hs.27018 NM_178859 ENSG00000186198 SLC51B OSTB|OSTBETA solute carrier family 51 beta subunit protein-coding 500-95 chr15 46646416 46646830 + 2 NA Intergenic Intergenic -537466 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 455-130 chr2 115248898 115249330 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -60123 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 359-167 chr16 22878638 22878854 + 2 NA intron (NM_006043, intron 1 of 1) L2a|LINE|L2 64584 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 314-140 chr12 124812869 124813070 + 2 NA intron (NR_160424, intron 4 of 11) (ATT)n|Simple_repeat|Simple_repeat 26702 NM_001367982 949 Hs.731377 NM_005505 ENSG00000073060 SCARB1 CD36L1|CLA-1|CLA1|HDLQTL6|SR-BI|SRB1 scavenger receptor class B member 1 protein-coding 398-131 chr16 77085270 77085625 + 2 NA Intergenic L2b|LINE|L2 -105743 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 250-32 chr10 15822792 15822989 + 2 NA intron (NM_024948, intron 8 of 14) intron (NM_024948, intron 8 of 14) 37617 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 233-333 chr6 67159873 67160100 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -895365 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 414-156 chr2 101537348 101537605 + 2 NA Intergenic AluJr4|SINE|Alu -62364 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 335-298 chr20 42438095 42438301 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -247285 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 302-158 chr16 54525216 54525427 + 2 NA Intergenic Intergenic -154622 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 302-79 chr11 78245107 78245303 + 2 NA intron (NM_012296, intron 3 of 9) L1MB2|LINE|L1 56286 NM_020798 57558 Hs.531249 NM_020798 ENSG00000118369 USP35 - ubiquitin specific peptidase 35 protein-coding 403-156 chr2 68482489 68482738 + 2 NA intron (NM_173545, intron 1 of 9) L1M2c|LINE|L1 15028 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 208-71 chr14 35974819 35974977 + 2 NA Intergenic HAL1|LINE|L1 -95529 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 253-343 chr5 124435062 124435212 + 2 NA intron (NR_125774, intron 3 of 5) L1MA9|LINE|L1 3383 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 284-325 chr5 84943062 84943245 + 2 NA Intergenic L1ME1|LINE|L1 -558273 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 298-464 chr8 106372702 106372917 + 2 NA intron (NM_018002, intron 2 of 15) Tigger4b|DNA|TcMar-Tigger -75115 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 253-162 chr18 4308588 4308770 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 44077 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 292-435 chr8 103717444 103717662 + 2 NA intron (NM_001348496, intron 3 of 23) intron (NM_001348496, intron 3 of 23) -101667 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 347-13 chr1 77548016 77548249 + 2 NA intron (NM_012093, intron 13 of 13) intron (NM_012093, intron 13 of 13) 134526 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 301-116 chr14 46176835 46177073 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 112795 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 645-83 chr3 150367133 150367561 + 2 NA Intergenic Intergenic -40951 NM_014779 9819 Hs.722470 NM_014779 ENSG00000196428 TSC22D2 TILZ4a|TILZ4b|TILZ4c TSC22 domain family member 2 protein-coding 747-28 chr18 5065590 5066304 + 2 NA Intergenic MIR|SINE|MIR -15235 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 311-279 chr2 204041992 204042187 + 2 NA Intergenic LTR40c|LTR|ERVL 105341 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 175-167 chr8 101107987 101108143 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger 56011 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 404-72 chr12 16623587 16623796 + 2 NA Intergenic Intergenic -15477 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 281-240 chr2 196491266 196491537 + 2 NA intron (NM_001348768, intron 1 of 28) (AC)n|Simple_repeat|Simple_repeat 101582 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 694-15 chr10 56737291 56737677 + 2 NA Intergenic L2c|LINE|L2 -376211 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 372-101 chr12 10015758 10016028 + 2 NA 3' UTR (NM_205852, exon 5 of 5) 3' UTR (NM_205852, exon 5 of 5) 5266 NM_001129998 387837 Hs.127937 NM_205852 ENSG00000256660 CLEC12B UNQ5782 C-type lectin domain family 12 member B protein-coding 306-155 chr14 82577569 82577771 + 2 NA Intergenic Intergenic -64962 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 481-139 chr2 48998066 48998399 + 2 NA intron (NM_000145, intron 4 of 9) Charlie7|DNA|hAT-Charlie -61371 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 572-7 chr1 153163513 153163924 + 2 NA Intergenic Intergenic -10800 NR_110685 101928009 Hs.385720 NR_110685 ENSG00000229699 LOC101928009 - uncharacterized LOC101928009 ncRNA 536-126 chr2 115096056 115096519 + 2 NA intron (NM_001178037, intron 1 of 25) MER58A|DNA|hAT-Charlie 31714 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 250-149 chr16 69677484 69677642 + 2 NA intron (NM_001113178, intron 10 of 14) intron (NM_001113178, intron 10 of 14) 31112 NR_145753 109617018 NR_145753 SNORD13H - small nucleolar RNA, C/D box 13H snoRNA 367-165 chr17 49293536 49293845 + 2 NA 3' UTR (NM_001145365, exon 6 of 6) 3' UTR (NM_001145365, exon 6 of 6) -5236 NR_106745 102465137 NR_106745 ENSG00000273500 MIR6129 hsa-mir-6129 microRNA 6129 ncRNA 286-80 chr11 133794442 133794658 + 2 NA intron (NR_120444, intron 2 of 2) intron (NR_120444, intron 2 of 2) 15826 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 402-294 chr6 49415173 49415535 + 2 NA Intergenic Intergenic 47899 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 618-118 chr7 41435862 41436467 + 2 NA Intergenic Intergenic -257755 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 307-22 chr1 152819364 152819589 + 2 NA Intergenic Intergenic 7505 NM_178349 353132 Hs.375103 NM_178349 ENSG00000196734 LCE1B LEP2|SPRL2A late cornified envelope 1B protein-coding 151-60 chr4 166368165 166368278 + 2 NA Intergenic L1M1|LINE|L1 494984 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 323-187 chr17 58949729 58950040 + 2 NA intron (NM_014906, intron 1 of 6) L1M2c|LINE|L1 156996 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 503-76 chr12 94400968 94401353 + 2 NA intron (NM_001042399, intron 4 of 15) intron (NM_001042399, intron 4 of 15) 58707 NM_001346457 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 255-450 chr8 140212160 140212350 + 2 NA intron (NM_001160372, intron 17 of 22) L1M5|LINE|L1 -111720 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 327-141 chr14 19992266 19992550 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -9654 NM_001348271 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 541-124 chr2 125563682 125564064 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 554112 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 382-198 chr2 79152845 79153096 + 2 NA Intergenic L1PA15|LINE|L1 6783 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 129-78 chr8 137578531 137578607 + 2 NA Intergenic Intergenic -164981 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 254-120 chr14 73007857 73008071 + 2 NA intron (NM_021260, intron 2 of 11) intron (NM_021260, intron 2 of 11) 19142 NM_021260 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 357-415 chr7 45619130 45619349 + 2 NA intron (NM_001281768, intron 4 of 9) L1MA5|LINE|L1 44871 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 408-249 chr4 130612180 130612487 + 2 NA Intergenic Intergenic 235972 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 319-494 chr7 18950712 18950926 + 2 NA intron (NM_058176, intron 22 of 22) L2c|LINE|L2 166817 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 279-86 chr12 127101616 127101884 + 2 NA Intergenic L1MEc|LINE|L1 -41353 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 683-91 chr8 118058570 118059105 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 52982 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 221-288 chr7 105623721 105623871 + 2 NA intron (NM_138495, intron 6 of 9) intron (NM_138495, intron 6 of 9) -42254 NM_001355531 100130771 Hs.719432 NM_001355526 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 protein-coding 170-21 chr10 81757219 81757347 + 2 NA Intergenic MER39B|LTR|ERV1 -117911 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 299-462 chr8 117197803 117198028 + 2 NA Intergenic Intergenic 62920 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 264-104 chr13 25226391 25226574 + 2 NA Intergenic Intergenic 45150 NR_120427 102723318 Hs.549877 NR_120427 LINC01053 - long intergenic non-protein coding RNA 1053 ncRNA 444-272 chr8 130707716 130708001 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -264184 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 374-169 chr2 4438964 4439328 + 2 NA Intergenic Intergenic 217076 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 325-56 chr10 36738977 36739173 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -386782 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 404-118 chr16 60053334 60053689 + 2 NA non-coding (NR_110917, exon 4 of 4) non-coding (NR_110917, exon 4 of 4) 198158 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 252-193 chr2 72416534 72416718 + 2 NA intron (NM_001321729, intron 18 of 22) MLT1I-int|LTR|ERVL-MaLR -268764 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 626-68 chr2 100507013 100507594 + 2 NA Intergenic L1M4b|LINE|L1 36821 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 234-228 chr3 16165913 16166072 + 2 NA Intergenic Intergenic -8688 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 245-151 chr16 10323211 10323447 + 2 NA Intergenic LTR34|LTR|ERV1 -62732 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 392-51 chr12 17304761 17304979 + 2 NA Intergenic LTR2|LTR|ERV1 284208 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 291-378 chr6 54087559 54087801 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -23763 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 284-290 chr4 83163303 83163558 + 2 NA Intergenic Intergenic -48701 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 306-467 chr7 38987787 38988001 + 2 NA intron (NR_138047, intron 4 of 6) intron (NR_138047, intron 4 of 6) 9985 NM_007252 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 347-436 chr6 117752944 117753175 + 2 NA Intergenic L1PA7|LINE|L1 77590 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 412-67 chr12 28571692 28572031 + 2 NA Intergenic Intergenic -381123 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 344-263 chr2 220534652 220534912 + 2 NA Intergenic LTR8B|LTR|ERV1 -628217 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 337-305 chr20 19619822 19620072 + 2 NA intron (NM_020689, intron 6 of 16) intron (NM_020689, intron 6 of 16) -266574 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 291-121 chr14 53985042 53985272 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -28266 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 366-446 chr8 89205847 89206150 + 2 NA Intergenic L1ME1|LINE|L1 551713 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 260-433 chr8 78170921 78171074 + 2 NA Intergenic Intergenic -345343 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 338-531 chr8 43880417 43880622 + 2 NA Intergenic ALR/Alpha|Satellite|centr 588077 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 266-310 chr4 173056913 173057133 + 2 NA Intergenic Intergenic -111788 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 471-13 chr1 188605764 188606137 + 2 NA Intergenic Intergenic 1162322 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 291-390 chr6 120488671 120488905 + 2 NA Intergenic Intergenic 473609 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 509-21 chr10 15230436 15230760 + 2 NA intron (NM_001010924, intron 5 of 7) intron (NM_001010924, intron 5 of 7) -61905 NM_001308295 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 398-288 chr6 16064456 16064803 + 2 NA Intergenic Intergenic -64457 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 574-199 chrX 22288645 22289047 + 2 NA intron (NR_073010, intron 5 of 11) THE1C-int|LTR|ERVL-MaLR 15933 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 425-296 chr8 46352009 46352307 + 2 NA Intergenic ALR/Alpha|Satellite|centr 265485 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 413-180 chr3 8272732 8273075 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 228755 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 406-217 chr4 163666595 163666914 + 2 NA intron (NM_001166373, intron 4 of 7) intron (NM_001166373, intron 4 of 7) -53220 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 591-24 chr11 68822057 68822593 + 2 NA intron (NM_001031847, intron 1 of 18) AluJo|SINE|Alu 19591 NM_001876 1374 Hs.503043 NM_001876 ENSG00000110090 CPT1A CPT1|CPT1-L|L-CPT1 carnitine palmitoyltransferase 1A protein-coding 341-261 chr2 109262571 109262870 + 2 NA intron (NM_001099289, intron 1 of 9) L1M4b|LINE|L1 50905 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 204-141 chr2 67153087 67153278 + 2 NA intron (NR_038844, intron 4 of 7) L1MA1|LINE|L1 -60226 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 405-190 chr21 42548904 42549204 + 2 NA intron (NM_001320537, intron 9 of 19) intron (NM_001320537, intron 9 of 19) 35202 NM_001320537 54020 Hs.547009 NM_018964 ENSG00000160190 SLC37A1 G3PP solute carrier family 37 member 1 protein-coding 204-272 chr7 54176268 54176426 + 2 NA Intergenic Intergenic -154350 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 309-382 chr4 26463435 26463738 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 26898 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 439-5 chr1 60056954 60057239 + 2 NA intron (NM_152377, intron 2 of 11) L2|LINE|L2 16674 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 589-159 chr8 115323446 115323854 + 2 NA Intergenic Intergenic 344363 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 509-141 chr22 43703689 43704144 + 2 NA intron (NM_198856, intron 8 of 29) L1M3b|LINE|L1 108389 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 131-34 chr18 75888318 75888434 + 2 NA Intergenic Intergenic -175973 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 238-289 chr5 22655047 22655269 + 2 NA intron (NM_004061, intron 1 of 14) L2|LINE|L2 198186 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 286-116 chr14 45353262 45353492 + 2 NA Intergenic L2c|LINE|L2 -100175 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 298-94 chr12 25962841 25963130 + 2 NA intron (NM_001164748, intron 1 of 4) intron (NM_001164748, intron 1 of 4) -3543 NR_038228 100506451 Hs.560092 NR_038227 RASSF8-AS1 - RASSF8 antisense RNA 1 ncRNA 281-41 chr10 61000501 61000684 + 2 NA intron (NM_001350902, intron 1 of 11) intron (NM_001350902, intron 1 of 11) 405 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 513-18 chr10 1395285 1395648 + 2 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) -131164 NR_033387 642394 Hs.568831 NM_001098830 ENSG00000205696 ADARB2-AS1 C10orf109|NCRNA00168 ADARB2 antisense RNA 1 ncRNA 311-410 chr5 82968613 82968797 + 2 NA Intergenic L1MA4|LINE|L1 95632 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 570-68 chr14 97908775 97909208 + 2 NA Intergenic HAL1b|LINE|L1 69133 NR_152748 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 367-283 chr3 74410637 74410854 + 2 NA intron (NM_020872, intron 4 of 21) intron (NM_020872, intron 4 of 21) 110395 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 156-28 chr12 47038132 47038243 + 2 NA Intergenic L1M5|LINE|L1 -41416 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 222-272 chr4 97254179 97254336 + 2 NA Intergenic Intergenic -112669 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 417-67 chr13 25523949 25524194 + 2 NA intron (NM_016529, intron 2 of 36) L1MA4|LINE|L1 55297 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 426-49 chr11 80796504 80796758 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -33828 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 257-151 chr18 3379486 3379634 + 2 NA Intergenic MIR|SINE|MIR -29001 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 258-311 chr5 16642541 16642716 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -25570 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 454-134 chr2 4408795 4409092 + 2 NA Intergenic Intergenic 247279 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 245-125 chr14 65652324 65652501 + 2 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 181310 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 618-61 chr2 86420990 86421579 + 2 NA Intergenic Intergenic -20087 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 197-205 chr8 104425872 104426027 + 2 NA intron (NM_001385, intron 6 of 9) intron (NM_001385, intron 6 of 9) 41106 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 282-358 chr4 176495184 176495349 + 2 NA Intergenic Intergenic 175300 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 340-222 chr19 22457052 22457308 + 2 NA intron (NR_160728, intron 1 of 1) intron (NR_160728, intron 1 of 1) -34834 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 598-106 chr5 42262732 42263173 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -87607 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 230-319 chr6 39318277 39318426 + 2 NA intron (NM_001135105, intron 2 of 4) L2c|LINE|L2 -3932 NM_001135111 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 566-203 chr8 140192242 140192770 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -91971 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 356-474 chr8 80440466 80440736 + 2 NA Intergenic L1MA6|LINE|L1 -44992 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 267-145 chr17 51523152 51523335 + 2 NA Intergenic L1MC3|LINE|L1 87816 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 289-257 chr20 4364324 4364519 + 2 NA Intergenic L2c|LINE|L2 -115134 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 337-603 chrX 77389714 77389938 + 2 NA Intergenic L1MA2|LINE|L1 -57563 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 237-322 chr6 38931530 38931758 + 2 NA intron (NM_001371, intron 74 of 91) L3b|LINE|CR1 21463 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 229-404 chr8 137447653 137447823 + 2 NA Intergenic Intergenic -34150 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 208-138 chr2 198739251 198739417 + 2 NA Intergenic Intergenic -364237 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 266-157 chr18 63778089 63778222 + 2 NA intron (NM_001261830, intron 1 of 7) intron (NM_001261830, intron 1 of 7) 378 NM_001261830 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 553-71 chr15 96012742 96013257 + 2 NA Intergenic L1MC1|LINE|L1 114842 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 645-88 chr4 66908274 66908847 + 2 NA Intergenic L1ME1|LINE|L1 513440 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 448-158 chr3 65645208 65645565 + 2 NA intron (NM_001365904, intron 1 of 24) L1MD3|LINE|L1 -248430 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 422-306 chr8 139623771 139624103 + 2 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 79186 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 348-371 chr4 97876234 97876500 + 2 NA intron (NM_174952, intron 8 of 10) intron (NM_174952, intron 8 of 10) 267109 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 419-65 chr12 29890001 29890299 + 2 NA Intergenic Intergenic -105391 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 219-206 chr20 40158528 40158716 + 2 NA Intergenic L2b|LINE|L2 154161 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 216-264 chr4 155634306 155634459 + 2 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -32328 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 214-350 chr9 27622289 27622456 + 2 NA Intergenic L1ME3G|LINE|L1 -48506 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 285-74 chr11 125816283 125816551 + 2 NA Intergenic L1MA2|LINE|L1 -16899 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 438-159 chr22 34916687 34917089 + 2 NA intron (NR_138042, intron 1 of 4) MER4A1|LTR|ERV1 81028 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 297-14 chr1 82528814 82528972 + 2 NA Intergenic Intergenic -374290 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 333-173 chr16 3834040 3834283 + 2 NA intron (NM_004380, intron 2 of 30) L1MD3|LINE|L1 45959 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 292-128 chr13 96668732 96669018 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 241646 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 359-503 chr9 24244153 24244432 + 2 NA Intergenic Intergenic 301384 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 169-129 chr8 3883101 3883208 + 2 NA intron (NM_033225, intron 5 of 69) MIRb|SINE|MIR 1111760 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 814-69 chrX 141954929 141955395 + 2 NA Intergenic Intergenic 51268 NM_005462 9947 Hs.132194 NM_005462 ENSG00000155495 MAGEC1 CT7|CT7.1 MAGE family member C1 protein-coding 220-68 chr11 38578848 38579036 + 2 NA Intergenic Intergenic 67414 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 407-282 chr6 137604831 137605131 + 2 NA Intergenic L2|LINE|L2 -60665 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 410-303 chr8 57309250 57309475 + 2 NA Intergenic Intergenic 29819 NR_026772 26138 Hs.159352 NM_015643 ENSG00000215117 LINC00588 C8orf71 long intergenic non-protein coding RNA 588 ncRNA 253-90 chr12 5362153 5362323 + 2 NA Intergenic Intergenic -69870 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 326-35 chr1 177155722 177156009 + 2 NA intron (NM_207108, intron 1 of 21) L1MC3|LINE|L1 8847 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 245-118 chr14 19886286 19886438 + 2 NA Intergenic L1M4a2|LINE|L1 10094 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 166-29 chr14 61493057 61493149 + 2 NA intron (NM_006255, intron 10 of 13) intron (NM_006255, intron 10 of 13) 77091 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 274-213 chr2 102247774 102248045 + 2 NA Intergenic L1ME3Cz|LINE|L1 60595 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 356-129 chr13 61759345 61759582 + 2 NA Intergenic L1MA4|LINE|L1 270085 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 282-150 chr15 96165857 96166045 + 2 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -38110 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 634-25 chr10 125410692 125411136 + 2 NA Intergenic Intergenic -163457 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 268-29 chr10 18899830 18900041 + 2 NA Intergenic L1ME3|LINE|L1 -148866 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 384-202 chr20 39898982 39899271 + 2 NA Intergenic MIR|SINE|MIR -105335 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 287-153 chr16 13637671 13637882 + 2 NA Intergenic LTR37A|LTR|ERV1 -282381 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 336-330 chr20 53447470 53447722 + 2 NA intron (NM_173485, intron 2 of 2) L1MC4a|LINE|L1 -105174 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 612-86 chr3 28390881 28391345 + 2 NA intron (NM_001040432, intron 2 of 9) intron (NM_001040432, intron 2 of 9) 41964 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 314-329 chr2 239582904 239583182 + 2 NA Intergenic Intergenic -179817 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 331-492 chr7 37534231 37534549 + 2 NA Intergenic L1ME3D|LINE|L1 -85064 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 257-256 chr22 27936778 27937022 + 2 NA intron (NR_026963, intron 2 of 4) intron (NR_026963, intron 2 of 4) -16288 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 554-10 chr1 88039030 88039410 + 2 NA Intergenic L1PREC2|LINE|L1 -644924 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 288-442 chr8 84713633 84713786 + 2 NA intron (NM_001287244, intron 1 of 7) L1M2|LINE|L1 7782 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 260-341 chr5 26681040 26681192 + 2 NA Intergenic L1MA9|LINE|L1 357470 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 427-285 chrX 44108650 44108942 + 2 NA Intergenic L1MC4|LINE|L1 -135406 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 341-274 chr2 171244675 171244890 + 2 NA Intergenic LTR26E|LTR|ERV1 -13489 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 307-204 chr18 56463834 56464044 + 2 NA Intergenic L1M3|LINE|L1 174653 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 528-33 chr10 53259402 53259877 + 2 NA Intergenic Intergenic -487939 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 491-286 chrX 83372783 83373202 + 2 NA Intergenic L1MA9|LINE|L1 -135298 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 157-115 chr6 139693042 139693167 + 2 NA Intergenic Intergenic -77969 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 165-63 chr2 237242879 237243000 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 157050 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 505-86 chr14 70534810 70535171 + 2 NA promoter-TSS (NM_003814) promoter-TSS (NM_003814) 14 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 287-358 chr6 97642132 97642311 + 2 NA intron (NR_110757, intron 3 of 4) intron (NR_110757, intron 3 of 4) 336635 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 323-483 chr7 30944175 30944393 + 2 NA Intergenic L1MC4|LINE|L1 -19669 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 357-461 chr8 132160225 132160547 + 2 NA intron (NM_001204824, intron 9 of 14) intron (NM_001204824, intron 9 of 14) -55121 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 241-68 chr11 75661761 75661939 + 2 NA intron (NM_207577, intron 1 of 2) L1M5|LINE|L1 6584 NM_033063 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 305-523 chr8 36329532 36329779 + 2 NA Intergenic Intergenic -454719 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 334-318 chr21 25221360 25221635 + 2 NA Intergenic L1M1|LINE|L1 210204 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 439-20 chr10 6856605 6856850 + 2 NA Intergenic Intergenic 77129 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 153-7 chr1 103871000 103871124 + 2 NA Intergenic ALR/Alpha|Satellite|centr 121221 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 170-63 chr19 24331373 24331482 + 2 NA Intergenic ALR/Alpha|Satellite|centr -167980 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 281-446 chr8 127616757 127617012 + 2 NA Intergenic MIR|SINE|MIR 117083 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 388-341 chr8 77351873 77352181 + 2 NA Intergenic Intergenic -98670 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 154-42 chr18 37959508 37959649 + 2 NA Intergenic Intergenic 302443 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 468-163 chr2 158521245 158521704 + 2 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 64522 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 395-160 chr2 31995718 31996015 + 2 NA intron (NR_126034, intron 1 of 6) L1ME4b|LINE|L1 14798 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 304-442 chr5 158909501 158909757 + 2 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 188327 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 385-348 chr7 16872206 16872494 + 2 NA intron (NM_176813, intron 3 of 7) L1MA5|LINE|L1 9633 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 553-136 chr2 173785569 173786003 + 2 NA Intergenic L1ME3Cz|LINE|L1 178094 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 594-115 chr5 92240029 92240502 + 2 NA Intergenic Intergenic -856948 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 238-59 chr10 127504390 127504582 + 2 NA Intergenic L1MB8|LINE|L1 -44863 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 509-154 chr3 118816767 118817213 + 2 NA Intergenic Intergenic -6157 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 178-9 chr1 186100909 186101048 + 2 NA intron (NM_031935, intron 68 of 106) MLT1J2|LTR|ERVL-MaLR -195295 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 306-529 chr8 133063360 133063534 + 2 NA intron (NM_001045557, intron 1 of 7) intron (NM_001045557, intron 1 of 7) -3093 NM_006748 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 212-241 chr4 103625155 103625312 + 2 NA intron (NM_001059, intron 3 of 4) intron (NM_001059, intron 3 of 4) 94752 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 362-99 chr11 111813919 111814217 + 2 NA intron (NR_147984, intron 13 of 15) L1ME3A|LINE|L1 -47679 NM_002716 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 394-110 chr14 84538679 84539064 + 2 NA Intergenic Intergenic -733061 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 207-137 chr2 62435565 62435724 + 2 NA Intergenic Intergenic 70551 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 289-27 chr1 180773686 180773932 + 2 NA intron (NR_137330, intron 2 of 12) intron (NR_137330, intron 2 of 12) -139088 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 287-382 chr7 58033165 58033325 + 2 NA Intergenic Intergenic 583068 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 393-183 chr2 191983499 191983775 + 2 NA intron (NM_001305134, intron 7 of 9) intron (NM_001305134, intron 7 of 9) -136549 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 369-66 chr11 96168222 96168572 + 2 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -173041 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 540-164 chr4 164323531 164323956 + 2 NA intron (NM_001166373, intron 1 of 7) L1M5|LINE|L1 59512 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 408-26 chr1 189917346 189917621 + 2 NA Intergenic L1PB4|LINE|L1 558527 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 410-208 chr4 30275761 30276069 + 2 NA Intergenic Intergenic -444454 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 222-57 chr11 10722220 10722390 + 2 NA Intergenic Intergenic -28317 NM_130385 10335 Hs.501898 NM_130385 ENSG00000072952 MRVI1 IRAG|JAW1L murine retrovirus integration site 1 homolog protein-coding 491-238 chr7 12926166 12926500 + 2 NA Intergenic Intergenic 238700 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 406-218 chr4 171712398 171712622 + 2 NA Intergenic HERVL40-int|LTR|ERVL -73747 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 481-56 chr11 78661225 78661593 + 2 NA intron (NM_001098816, intron 33 of 33) intron (NM_001098816, intron 33 of 33) -86545 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 692-40 chr18 10933715 10934152 + 2 NA intron (NM_022068, intron 3 of 51) THE1B|LTR|ERVL-MaLR -174284 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 276-121 chr13 39709849 39710050 + 2 NA intron (NM_001145079, intron 13 of 18) L1ME3|LINE|L1 -45814 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 638-14 chr10 44687005 44687483 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -224072 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 320-498 chr6 152937081 152937251 + 2 NA Intergenic AluSx3|SINE|Alu 45875 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 290-276 chr3 45275020 45275198 + 2 NA Intergenic Intergenic -48822 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 323-156 chr14 87088950 87089230 + 2 NA Intergenic Intergenic 183312 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 365-304 chr4 132477333 132477587 + 2 NA Intergenic L2a|LINE|L2 -113629 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 286-169 chr18 5263938 5264165 + 2 NA Intergenic L1PA13|LINE|L1 25951 NR_015389 339290 Hs.643553 NR_015389 ENSG00000263753 LINC00667 - long intergenic non-protein coding RNA 667 ncRNA 328-215 chr17 79346604 79346895 + 2 NA intron (NM_001082575, intron 2 of 14) L1M5|LINE|L1 169399 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 394-350 chrX 98567732 98567985 + 2 NA Intergenic L1MA8|LINE|L1 -1003323 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 320-52 chr10 25278887 25279061 + 2 NA intron (NM_020752, intron 2 of 10) L1MEd|LINE|L1 -102698 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 256-457 chr9 108609669 108609899 + 2 NA Intergenic Intergenic 246202 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 138-60 chr4 147326960 147327057 + 2 NA Intergenic Intergenic 17709 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 302-137 chr14 88048844 88049083 + 2 NA intron (NR_046094, intron 2 of 3) intron (NR_046094, intron 2 of 3) -22651 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 321-417 chr4 60005258 60005486 + 2 NA Intergenic Intergenic -917247 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 411-19 chr1 229775786 229776089 + 2 NA Intergenic Intergenic 109881 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 261-285 chr4 79240379 79240561 + 2 NA intron (NR_038342, intron 4 of 5) ERVL-E-int|LTR|ERVL 85591 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 354-467 chr8 88077208 88077515 + 2 NA intron (NM_005941, intron 6 of 9) L2a|LINE|L2 -203346 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 198-113 chr2 6858310 6858459 + 2 NA intron (NR_046236, intron 3 of 4) L2a|LINE|L2 7435 NM_001256478 129607 Hs.7155 NM_207315 ENSG00000134326 CMPK2 NDK|TMPK2|TYKi|UMP-CMPK2 cytidine/uridine monophosphate kinase 2 protein-coding 280-412 chr8 90516006 90516230 + 2 NA Intergenic Intergenic 89945 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 260-90 chr11 112684497 112684706 + 2 NA Intergenic L1M5|LINE|L1 -128799 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 264-338 chr5 125932533 125932780 + 2 NA Intergenic L1MEf|LINE|L1 -246921 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 442-178 chr3 1605702 1606012 + 2 NA Intergenic L1MC3|LINE|L1 -492946 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 525-37 chr11 16246540 16246897 + 2 NA intron (NM_033326, intron 3 of 15) L1ME2|LINE|L1 109828 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 211-45 chr11 24363506 24363683 + 2 NA Intergenic L1MA5|LINE|L1 -133459 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 382-83 chr12 118970071 118970303 + 2 NA Intergenic Intergenic -11354 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 418-198 chr4 130232696 130233055 + 2 NA Intergenic Intergenic -143486 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 359-193 chr17 74069661 74069932 + 2 NA Intergenic Intergenic -133882 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 130 chr1 5235017 5235115 + 2 NA Intergenic Intergenic 580457 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 300-142 chr16 60511413 60511664 + 2 NA Intergenic Intergenic -151745 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 472-253 chr5 106486949 106487370 + 2 NA Intergenic Intergenic 523855 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 331-249 chr2 21721221 21721413 + 2 NA Intergenic Intergenic -10665 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 370-305 chr3 22015746 22015997 + 2 NA Intergenic Intergenic 58732 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 396-177 chr2 134591355 134591614 + 2 NA intron (NM_030923, intron 2 of 7) MER41A|LTR|ERV1 127516 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 264-15 chr1 160497852 160498098 + 2 NA intron (NM_001184714, intron 1 of 7) L1PA16|LINE|L1 25280 NM_001184715 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 217-329 chr6 118563305 118563440 + 2 NA intron (NM_001042475, intron 3 of 12) MIRc|SINE|MIR 15076 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 503-23 chr10 26051154 26051594 + 2 NA intron (NM_017433, intron 10 of 34) intron (NM_017433, intron 10 of 34) 117145 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 474-111 chr17 70125979 70126337 + 2 NA intron (NM_001291622, intron 4 of 5) MER41C|LTR|ERV1 21313 NM_001291625 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 415-65 chr13 97635510 97635772 + 2 NA Intergenic Intergenic 201472 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 316-569 chr8 133931777 133931972 + 2 NA Intergenic L1MC3|LINE|L1 45378 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 199-254 chr9 27105979 27106115 + 2 NA Intergenic L1MA1|LINE|L1 -3094 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 322-270 chr2 135492179 135492468 + 2 NA intron (NM_001286569, intron 2 of 21) L1MC4|LINE|L1 38262 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 159-2 chr1 65156326 65156438 + 2 NA intron (NM_001330616, intron 1 of 4) L1ME4b|LINE|L1 7388 NM_001330616 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 325-297 chr2 228471269 228471514 + 2 NA Intergenic MER67C|LTR|ERV1 140004 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 253-368 chr6 157503582 157503822 + 2 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) -25430 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 557-142 chr3 189556662 189557051 + 2 NA Intergenic MER76|LTR|ERVL -39890 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 334-197 chr16 72364955 72365273 + 2 NA intron (NR_126330, intron 8 of 13) intron (NR_126330, intron 8 of 13) -192664 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 377-187 chr2 21988852 21989133 + 2 NA Intergenic Intergenic -278340 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 363-116 chr13 24131529 24131810 + 2 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -29051 NM_153023 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 194-81 chr18 75377598 75377739 + 2 NA Intergenic Intergenic 50035 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 352-417 chr5 52289396 52289590 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 281462 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 202-84 chr15 96860919 96861085 + 2 NA Intergenic L1ME3Cz|LINE|L1 77567 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 278-321 chr4 153307217 153307484 + 2 NA TTS (NR_001562) TTS (NR_001562) 1461 NR_001562 303 Hs.546235 NR_001562 ANXA2P1 ANX2L1|ANX2P1|LPC2A annexin A2 pseudogene 1 pseudo 302-380 chr6 60649168 60649405 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -924844 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 284-241 chr21 18686415 18686662 + 2 NA promoter-TSS (NR_036166) promoter-TSS (NR_036166) -374 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 271-49 chr10 66248096 66248277 + 2 NA intron (NM_001127384, intron 13 of 17) L1MA2|LINE|L1 676761 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 380-203 chr2 153498622 153498844 + 2 NA Intergenic MER52A|LTR|ERV1 -19971 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 597-14 chr1 214255203 214255599 + 2 NA Intergenic HAL1|LINE|L1 -25758 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 264-125 chr14 41106684 41106908 + 2 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 152085 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 586-160 chr8 131584470 131584971 + 2 NA Intergenic L2c|LINE|L2 -319373 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 284-225 chr2 227565538 227565786 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 52993 NR_149019 729968 Hs.689550 NR_149019 LOC729968 - spore coat protein SP96 ncRNA 390-38 chr10 62898397 62898704 + 2 NA Intergenic Intergenic -79383 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 291-499 chr9 119643448 119643673 + 2 NA Intergenic Intergenic -274125 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 266-25 chr1 198349637 198349886 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 191184 NM_133262 127124 Hs.127743 NM_133262 ENSG00000151418 ATP6V1G3 ATP6G3|Vma10 ATPase H+ transporting V1 subunit G3 protein-coding 385-190 chr2 161070422 161070706 + 2 NA Intergenic Intergenic -66391 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 195-78 chr16 76265874 76266002 + 2 NA Intergenic L1MB2|LINE|L1 -11463 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 459-310 chr8 134675568 134675924 + 2 NA intron (NM_001289394, intron 1 of 16) L1PA7|LINE|L1 20809 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 413-43 chr10 117604767 117605028 + 2 NA Intergenic Intergenic -59829 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 279-424 chr8 130218587 130218732 + 2 NA intron (NM_001362925, intron 4 of 29) intron (NM_001362925, intron 4 of 29) 77874 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 514-21 chr10 23043670 23044022 + 2 NA Intergenic Intergenic -51733 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 308-215 chr2 11629251 11629416 + 2 NA intron (NM_014668, intron 25 of 32) intron (NM_014668, intron 25 of 32) 40862 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 291-39 chr10 12654601 12654757 + 2 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) -1482 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 259-234 chr20 52539202 52539397 + 2 NA Intergenic Intergenic -81539 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 609-92 chr4 147205017 147205563 + 2 NA Intergenic Intergenic 139427 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 217-70 chr11 50513669 50513782 + 2 NA Intergenic HERVK9-int|LTR|ERVK 104578 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 372-37 chr10 18332920 18333140 + 2 NA intron (NM_000724, intron 1 of 12) intron (NM_000724, intron 1 of 12) -7679 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 345-80 chr10 127646643 127646921 + 2 NA Intergenic L1ME1|LINE|L1 -90403 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 364-126 chr14 52009313 52009529 + 2 NA 3' UTR (NM_016039, exon 8 of 8) 3' UTR (NM_016039, exon 8 of 8) 19875 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 524-167 chr4 43269942 43270315 + 2 NA Intergenic Intergenic 222415 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 228-118 chr16 8918865 8919020 + 2 NA intron (NM_001286458, intron 7 of 31) intron (NM_001286458, intron 7 of 31) 17697 NM_001286457 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 409-11 chr1 189432877 189433166 + 2 NA Intergenic Intergenic 1042989 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 238-390 chr8 107555762 107555916 + 2 NA Intergenic Intergenic -57921 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 359-71 chr10 109109440 109109696 + 2 NA Intergenic Intergenic 813678 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 253-180 chr2 36082769 36082924 + 2 NA Intergenic Intergenic 272724 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 336-154 chr13 101059232 101059498 + 2 NA TTS (NR_047687) TTS (NR_047687) -115001 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 293-381 chr6 135553556 135553723 + 2 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 55838 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 136-70 chr5 62450405 62450519 + 2 NA intron (NM_016338, intron 4 of 29) Tigger3|DNA|TcMar-Tigger 31578 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 202-253 chr8 82669472 82669662 + 2 NA Intergenic Intergenic -242537 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 214-307 chr7 111587593 111587744 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -25151 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 327-518 chr9 27961708 27961986 + 2 NA intron (NM_001354574, intron 5 of 5) L2|LINE|L2 -387981 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 357-431 chr8 46067043 46067384 + 2 NA Intergenic ALR/Alpha|Satellite|centr 550430 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 393-93 chr14 48479823 48480085 + 2 NA Intergenic L1MEh|LINE|L1 -684940 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 497-202 chr4 61677636 61678076 + 2 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 475684 NM_001371342 356-108 chr12 58778490 58778742 + 2 NA intron (NR_120452, intron 1 of 7) L1M4|LINE|L1 3100 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 487-237 chr5 117788834 117789162 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 58637 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 272-345 chr5 53491582 53491803 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 11063 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 234-135 chr17 61101514 61101745 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 266075 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 294-393 chr5 155598737 155598923 + 2 NA Intergenic Intergenic 585075 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 514-280 chr8 52986197 52986567 + 2 NA Intergenic Intergenic 46474 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 569-58 chr14 72040487 72040900 + 2 NA intron (NM_001370288, intron 2 of 16) L1MB2|LINE|L1 107166 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 559-69 chr16 78889570 78889926 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 710989 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 789-48 chr8 121196264 121196862 + 2 NA Intergenic Intergenic -384517 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 589-153 chr7 116224390 116224832 + 2 NA intron (NM_152829, intron 1 of 6) intron (NM_152829, intron 1 of 6) 1658 NM_152829 26136 Hs.592286 NM_015641 ENSG00000135269 TES TESS|TESS-2 testin LIM domain protein protein-coding 241-274 chr4 95788297 95788475 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -51707 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 298-247 chr2 215845530 215845720 + 2 NA Intergenic Intergenic -2089 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 263-159 chr17 74519018 74519227 + 2 NA Intergenic L1MA5|LINE|L1 12353 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 192-180 chr6 153349886 153350044 + 2 NA Intergenic Intergenic -218683 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 240-82 chr11 80529101 80529333 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger 233586 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 248-257 chr3 166558842 166559022 + 2 NA Intergenic L1PA17|LINE|L1 -339751 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 199-92 chr19 28849977 28850134 + 2 NA Intergenic Intergenic -115076 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 489-168 chr22 34563048 34563364 + 2 NA Intergenic L1PA16|LINE|L1 434710 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 351-174 chr17 58861299 58861609 + 2 NA intron (NM_014906, intron 1 of 6) ERV24_Prim-int|LTR|ERV1 105585 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 235-181 chr2 139674452 139674633 + 2 NA Intergenic Intergenic 777218 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 234-392 chr8 116417964 116418116 + 2 NA Intergenic (TCTCTT)n|Simple_repeat|Simple_repeat -92981 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 149-40 chr17 27799923 27800053 + 2 NA intron (NM_000625, intron 1 of 26) MIRb|SINE|MIR 541 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 455-51 chr11 79113534 79113832 + 2 NA intron (NM_001098816, intron 4 of 33) intron (NM_001098816, intron 4 of 33) 288426 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 396-45 chr10 38577138 38577370 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -119342 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 375-74 chr11 57143346 57143566 + 2 NA Intergenic Intergenic -38497 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 282-147 chr15 70293594 70293797 + 2 NA Intergenic Intergenic -195778 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 412-238 chr4 80573318 80573684 + 2 NA intron (NM_152770, intron 2 of 5) L1MA3|LINE|L1 237781 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 362-207 chr2 35640371 35640648 + 2 NA Intergenic Intergenic 169104 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 342-442 chr6 18814044 18814339 + 2 NA Intergenic Intergenic 242407 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 664-112 chr8 38739074 38739620 + 2 NA intron (NR_148052, intron 2 of 3) L1MC3|LINE|L1 10765 NM_001352793 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 527-268 chr8 110950898 110951357 + 2 NA intron (NR_125417, intron 5 of 5) MER57A1|LTR|ERV1 76306 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 336-210 chr17 40300826 40301143 + 2 NA exon (NM_001254, exon 10 of 12) exon (NM_001254, exon 10 of 12) -8196 NM_000964 5914 Hs.654583 NM_000964 ENSG00000131759 RARA NR1B1|RAR retinoic acid receptor alpha protein-coding 298-164 chr17 59802707 59802868 + 2 NA intron (NM_001329400, intron 5 of 9) AluSp|SINE|Alu -38479 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 337-577 chr9 35508019 35508302 + 2 NA intron (NM_001330740, intron 1 of 10) L2b|LINE|L2 18049 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 564-198 chr8 33027068 33027589 + 2 NA Intergenic Intergenic 305493 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 284-30 chr10 43967747 43967962 + 2 NA intron (NR_033846, intron 7 of 7) L1M4b|LINE|L1 55452 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 532-191 chr4 97261739 97262183 + 2 NA Intergenic Intergenic -104965 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 208-122 chr2 103801008 103801159 + 2 NA Intergenic L1MEg|LINE|L1 607249 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 390-222 chr22 28296446 28296718 + 2 NA intron (NM_001145418, intron 4 of 22) intron (NM_001145418, intron 4 of 22) -163287 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 573-42 chr11 93927202 93927593 + 2 NA Intergenic L1MC1|LINE|L1 -76779 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 639-88 chr4 57515271 57515770 + 2 NA Intergenic L1M2|LINE|L1 89648 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 254-202 chr2 170283215 170283370 + 2 NA intron (NM_001083615, intron 7 of 33) L1M2b|LINE|L1 67651 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 260-459 chr9 89198631 89198815 + 2 NA Intergenic L1M3|LINE|L1 -19905 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 381-99 chr14 25441738 25442043 + 2 NA Intergenic MIR1_Amn|SINE|MIR -391593 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 281-224 chr2 123524370 123524570 + 2 NA Intergenic Intergenic -450989 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 293-157 chr17 67457595 67457785 + 2 NA intron (NM_181671, intron 1 of 9) L1MEd|LINE|L1 -13799 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 401-220 chr3 190995292 190995622 + 2 NA Intergenic Intergenic 117527 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 503-180 chr21 20506113 20506487 + 2 NA Intergenic L1PA15-16|LINE|L1 -247615 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 467-284 chr8 118787199 118787532 + 2 NA Intergenic (TACATA)n|Simple_repeat|Simple_repeat 164520 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 362-124 chr12 102257187 102257434 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -59477 NM_002674 5367 Hs.707990 NM_002674 ENSG00000183395 PMCH MCH|ppMCH pro-melanin concentrating hormone protein-coding 224-79 chr14 32672694 32672911 + 2 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) -266077 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 325-191 chr16 8903078 8903370 + 2 NA intron (NM_001286458, intron 17 of 31) intron (NM_001286458, intron 17 of 31) 33415 NM_001286457 7874 Hs.386939 NM_003470 ENSG00000187555 USP7 HAUSP|TEF1 ubiquitin specific peptidase 7 protein-coding 277-79 chr11 89165137 89165393 + 2 NA Intergenic Intergenic -12610 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 196-57 chr12 17877459 17877614 + 2 NA Intergenic L1MB1|LINE|L1 204237 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 214-325 chr8 86488202 86488353 + 2 NA intron (NM_001286719, intron 3 of 8) intron (NM_001286719, intron 3 of 8) 20409 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 477-205 chr3 90615534 90615938 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1508115 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 501-67 chr14 66704381 66704733 + 2 NA intron (NM_001024218, intron 2 of 21) L1PA8A|LINE|L1 197150 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 201-72 chr13 64686162 64686301 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -610220 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 405-340 chr9 19864355 19864724 + 2 NA Intergenic L1MA2|LINE|L1 -77520 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 349-509 chr8 118649743 118650030 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -27923 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 354-201 chr2 13306643 13306917 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 -299767 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 261-21 chr1 163029246 163029438 + 2 NA Intergenic Intergenic -39264 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 362-363 chr5 159688451 159688646 + 2 NA Intergenic L1MA1|LINE|L1 182836 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 359-516 chr9 124075781 124076115 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 64180 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 382-152 chr18 7386806 7387054 + 2 NA Intergenic L2c|LINE|L2 74076 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 154-8 chr1 113555893 113556002 + 2 NA intron (NM_001142782, intron 2 of 20) L1MC|LINE|L1 165432 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 399-100 chr15 85120529 85120750 + 2 NA intron (NM_001243137, intron 17 of 21) intron (NM_001243137, intron 17 of 21) 114142 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 238-190 chr2 175500173 175500351 + 2 NA Intergenic L1M1|LINE|L1 -318552 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 311-123 chr13 85335086 85335352 + 2 NA Intergenic Intergenic -28384 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 412-97 chr15 25078242 25078578 + 2 NA promoter-TSS (NR_003328) promoter-TSS (NR_003328) -647 NR_003328 100033425 NR_003328 ENSG00000207137 SNORD116-13 HBII-85-13 small nucleolar RNA, C/D box 116-13 snoRNA 311-546 chr9 86220229 86220428 + 2 NA TTS (NM_001276368) TTS (NM_001276368) 35705 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 322-13 chr1 76671231 76671464 + 2 NA Intergenic L2b|LINE|L2 107920 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 214-117 chr16 50709373 50709523 + 2 NA intron (NR_163434, intron 3 of 12) intron (NR_163434, intron 3 of 12) 10068 NM_001293557 64127 Hs.592072 NM_022162 ENSG00000167207 NOD2 ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS nucleotide binding oligomerization domain containing 2 protein-coding 489-165 chr21 25518781 25519231 + 2 NA Intergenic L1M1|LINE|L1 -43139 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene ncRNA 328-549 chr7 126180835 126181027 + 2 NA Intergenic L1PB1|LINE|L1 877253 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 687-54 chr19 36754148 36754671 + 2 NA intron (NM_001267779, intron 3 of 3) L1MEd|LINE|L1 18398 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 376-416 chr8 134345946 134346267 + 2 NA Intergenic MER117|DNA|hAT-Charlie -251965 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 647-42 chr18 76086417 76086787 + 2 NA Intergenic Intergenic -36396 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 286-244 chr20 11974369 11974625 + 2 NA Intergenic Intergenic 56604 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 309-63 chr10 99461440 99461737 + 2 NA Intergenic Intergenic -30964 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 258-211 chr2 195873529 195873736 + 2 NA exon (NM_018897, exon 39 of 65) exon (NM_018897, exon 39 of 65) 195205 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 294-269 chr21 27636056 27636298 + 2 NA Intergenic Intergenic -86202 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 388-262 chr4 169888665 169889033 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 87053 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LINC02275 - long intergenic non-protein coding RNA 2275 ncRNA 330-185 chr16 27814131 27814449 + 2 NA intron (NM_001109763, intron 5 of 6) AluJr|SINE|Alu 73867 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 181-45 chr15 25005426 25005519 + 2 NA intron (NR_146177, intron 20 of 147) L1M4c|LINE|L1 18547 NR_001292 338427 NR_001292 ENSG00000239014 SNORD108 HBII-437 small nucleolar RNA, C/D box 108 snoRNA 399-267 chr6 70276095 70276441 + 2 NA intron (NM_001851, intron 10 of 37) intron (NM_001851, intron 10 of 37) 6929 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 223-254 chr4 102171070 102171220 + 2 NA Intergenic Intergenic 153167 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 312-385 chr4 101378147 101378372 + 2 NA Intergenic L1PA16|LINE|L1 30482 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 698-79 chr7 25300107 25300712 + 2 NA Intergenic Intergenic -71923 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 382-315 chr5 13381410 13381718 + 2 NA Intergenic L1PA16|LINE|L1 -348678 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 351-220 chr2 77902367 77902597 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -13452 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 769-53 chr5 110116381 110117060 + 2 NA Intergenic MER20|DNA|hAT-Charlie 233538 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 444-120 chr2 104105614 104106007 + 2 NA Intergenic AluSz6|SINE|Alu 302522 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 487-75 chr13 64025052 64025448 + 2 NA intron (NR_145420, intron 2 of 5) MER45C|DNA|hAT-Tip100 50761 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 343-40 chr10 9387943 9388159 + 2 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -92458 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 613-29 chr14 48952682 48953209 + 2 NA Intergenic Intergenic 633435 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 365-269 chr3 150313947 150314155 + 2 NA intron (NR_110187, intron 1 of 1) intron (NR_110187, intron 1 of 1) 9696 NR_110186 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 309-283 chr2 189319019 189319311 + 2 NA Intergenic Charlie16a|DNA|hAT-Charlie -122268 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 492-244 chr7 104874916 104875228 + 2 NA intron (NM_199000, intron 2 of 2) AluJo|SINE|Alu 51573 NR_027374 723809 Hs.124316 NR_027374 ENSG00000225329 LHFPL3-AS2 - LHFPL3 antisense RNA 2 ncRNA 172-100 chr5 32731503 32731618 + 2 NA intron (NM_001363652, intron 2 of 7) MIRb|SINE|MIR 20239 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 321-237 chr17 70006201 70006504 + 2 NA Intergenic Intergenic 44645 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 332-459 chr6 109541204 109541443 + 2 NA intron (NM_001145128, intron 27 of 40) L1ME4a|LINE|L1 -58086 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 247-230 chr20 20940708 20940948 + 2 NA Intergenic L1ME2|LINE|L1 165530 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 655-64 chr2 195111471 195111985 + 2 NA Intergenic Intergenic 381133 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 370-371 chr5 65865709 65865925 + 2 NA Intergenic L2|LINE|L2 -60737 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 227-273 chr5 13081516 13081736 + 2 NA Intergenic L1MEd|LINE|L1 -48740 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 388-35 chr1 227655187 227655400 + 2 NA exon (NM_001367910, exon 5 of 5) exon (NM_001367910, exon 5 of 5) 42414 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 302-233 chr2 163752141 163752367 + 2 NA Intergenic Intergenic -16246 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 371-360 chr7 37457821 37458097 + 2 NA Intergenic HAL1ME|LINE|L1 -8633 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 321-196 chr15 66867425 66867612 + 2 NA Intergenic L1MEd|LINE|L1 88997 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 344-219 chr2 6058811 6059015 + 2 NA Intergenic Intergenic 76935 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 401-137 chr18 55374928 55375319 + 2 NA intron (NM_001348217, intron 5 of 18) intron (NM_001348217, intron 5 of 18) 26565 NM_001330605 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 384-27 chr1 219092803 219093096 + 2 NA intron (NR_038845, intron 3 of 4) L1MA4|LINE|L1 80839 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 198-31 chr10 121430659 121430811 + 2 NA Intergenic Intergenic 100579 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 522-153 chr2 225067924 225068256 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -25622 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 361-296 chr3 109705867 109706079 + 2 NA Intergenic Intergenic 103145 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 419-128 chr19 39316335 39316736 + 2 NA Intergenic Intergenic -1199 NM_020862 57622 Hs.97860 NM_020862 ENSG00000128011 LRFN1 SALM2 leucine rich repeat and fibronectin type III domain containing 1 protein-coding 149-81 chr5 26621461 26621565 + 2 NA Intergenic Intergenic 417073 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 359-320 chr3 74781980 74782188 + 2 NA Intergenic Intergenic -260944 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 640-73 chr21 15456960 15457502 + 2 NA Intergenic L1M4|LINE|L1 -272703 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 503-59 chr11 94320265 94320569 + 2 NA Intergenic Intergenic 14780 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 719-7 chr1 213946466 213947030 + 2 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 21999 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 223-92 chr14 83885192 83885343 + 2 NA Intergenic AluY|SINE|Alu 1242635 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 159-97 chr8 134008627 134008728 + 2 NA Intergenic Intergenic 122181 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 481-173 chr20 24174186 24174493 + 2 NA Intergenic L1MB2|LINE|L1 -25428 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 327-190 chr16 75334598 75334831 + 2 NA intron (NM_006324, intron 5 of 6) AluSz6|SINE|Alu -66707 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 389-342 chr7 46505347 46505617 + 2 NA Intergenic L1MA2|LINE|L1 191640 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 373-331 chr5 113208981 113209251 + 2 NA intron (NM_001085377, intron 3 of 18) L4_B_Mam|LINE|RTE-X 85822 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 420-28 chr1 236055839 236056217 + 2 NA intron (NM_002508, intron 1 of 19) L1M3|LINE|L1 9062 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 420-157 chr2 182378098 182378421 + 2 NA intron (NM_005019, intron 1 of 14) L1ME2|LINE|L1 48789 NM_001363871 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 320-258 chr2 57653717 57653914 + 2 NA Intergenic L1MB8|LINE|L1 -253836 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 158-29 chr14 53551579 53551716 + 2 NA Intergenic Intergenic 396837 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 193-154 chr4 67342523 67342681 + 2 NA Intergenic LTR49|LTR|ERV1 79398 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 370-14 chr1 152477899 152478238 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -32735 NM_178438 254910 Hs.516410 NM_178438 ENSG00000186207 LCE5A LEP18|SPRL5A late cornified envelope 5A protein-coding 395-93 chr14 60350858 60351084 + 2 NA Intergenic Intergenic 27775 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 304-459 chr6 52498674 52498882 + 2 NA 3' UTR (NM_012288, exon 11 of 11) 3' UTR (NM_012288, exon 11 of 11) 77770 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 446-288 chr7 124177186 124177409 + 2 NA Intergenic Intergenic -144230 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 290-317 chr4 77564639 77564855 + 2 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 52994 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 353-246 chr2 77515279 77515519 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 6977 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 554-30 chr10 65997152 65997519 + 2 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 425910 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 212-140 chr2 4977468 4977619 + 2 NA Intergenic Intergenic -321321 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 506-307 chrX 112514737 112515205 + 2 NA Intergenic L1M3f|LINE|L1 164967 NM_178175 340596 Hs.297420 NM_178175 ENSG00000182508 LHFPL1 - LHFPL tetraspan subfamily member 1 protein-coding 402-307 chr6 154640616 154640886 + 2 NA Intergenic AluSz6|SINE|Alu -92627 NM_001286199 22828 Hs.591329 NM_014892 ENSG00000213079 SCAF8 RBM16 SR-related CTD associated factor 8 protein-coding 461-44 chr10 126940545 126940887 + 2 NA intron (NM_001290223, intron 1 of 51) intron (NM_001290223, intron 1 of 51) 35307 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 199-178 chr4 32755698 32755822 + 2 NA Intergenic L1PB3|LINE|L1 404722 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 603-155 chr7 53526294 53526721 + 2 NA Intergenic L1MB3|LINE|L1 285424 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 433-216 chr5 22957106 22957443 + 2 NA Intergenic Intergenic -103930 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 346-350 chr4 59903627 59903956 + 2 NA Intergenic MLT2B2|LTR|ERVL 890218 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 481-7 chr1 100804034 100804445 + 2 NA Intergenic Intergenic 84497 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 484-120 chr2 31695905 31696238 + 2 NA Intergenic Intergenic 107909 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 131-33 chr18 2784608 2784700 + 2 NA intron (NM_015295, intron 45 of 47) intron (NM_015295, intron 45 of 47) -62352 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 615-115 chr5 145725179 145725608 + 2 NA Intergenic L1M5|LINE|L1 109949 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 441-42 chr11 60822547 60822828 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -19426 NM_024098 79080 Hs.4253 NM_024098 ENSG00000110104 CCDC86 - coiled-coil domain containing 86 protein-coding 206-35 chr10 83734278 83734426 + 2 NA Intergenic L1MA8|LINE|L1 -57263 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 402-112 chr17 61606521 61606886 + 2 NA Intergenic L1ME1|LINE|L1 -15484 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 261-322 chr5 148515063 148515298 + 2 NA intron (NM_001040172, intron 4 of 5) L1ME3|LINE|L1 121881 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 333-387 chr4 57969120 57969366 + 2 NA Intergenic MamGypLTR1d|LTR|Gypsy 543371 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 319-188 chr17 55592666 55592894 + 2 NA Intergenic L1M4a2|LINE|L1 130084 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 304-557 chr9 111360749 111360947 + 2 NA 3' UTR (NM_001364929, exon 50 of 50) 3' UTR (NM_001364929, exon 50 of 50) -30624 NM_205859 26248 Hs.381312 NM_205859 ENSG00000171133 OR2K2 HSHTPCRH06|HTPCRH06|OR2AN1P|OR2AR1P olfactory receptor family 2 subfamily K member 2 protein-coding 323-450 chr6 20922923 20923122 + 2 NA intron (NM_017774, intron 9 of 15) intron (NM_017774, intron 9 of 15) 388565 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 266-150 chr17 79299348 79299558 + 2 NA intron (NM_001082575, intron 3 of 14) MER2|DNA|TcMar-Tigger 216695 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 293-66 chr11 82131979 82132190 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -241248 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 338-286 chr2 192012844 192013077 + 2 NA intron (NM_001305134, intron 5 of 9) intron (NM_001305134, intron 5 of 9) -165872 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 402-194 chr21 29388606 29388872 + 2 NA Intergenic Intergenic 16238 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 233-366 chr8 49727216 49727445 + 2 NA Intergenic Intergenic -182466 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 454-173 chr2 128932932 128933196 + 2 NA Intergenic L1MCa|LINE|L1 68464 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 403-271 chr6 67479150 67479542 + 2 NA Intergenic MIRb|SINE|MIR -576005 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 252-409 chr7 125840193 125840393 + 2 NA Intergenic Intergenic -576002 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 330-518 chr8 84913104 84913370 + 2 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) -194001 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 286-163 chr17 61146506 61146666 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 221118 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 291-46 chr10 43496409 43496656 + 2 NA Intergenic Intergenic 59421 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 183-60 chr17 10413388 10413498 + 2 NA intron (NM_002472, intron 12 of 39) intron (NM_002472, intron 12 of 39) 8507 NM_002472 4626 Hs.700484 NM_002472 ENSG00000133020 MYH8 DA7|MyHC-peri|MyHC-pn|gtMHC-F myosin heavy chain 8 protein-coding 472-232 chr4 108661323 108661645 + 2 NA intron (NM_021227, intron 3 of 3) intron (NM_021227, intron 3 of 3) 10885 NM_021227 58505 Hs.445803 NM_021227 ENSG00000198856 OSTC DC2 oligosaccharyltransferase complex non-catalytic subunit protein-coding 185-87 chr19 29067397 29067546 + 2 NA Intergenic L1MEf|LINE|L1 64916 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 326-47 chr1 222769275 222769505 + 2 NA Intergenic LTR41|LTR|ERVL 29706 NM_001324080 400823 Hs.697608 NM_207468 ENSG00000197520 FAM177B - family with sequence similarity 177 member B protein-coding 695 chr1 5056606 5057277 + 2 NA Intergenic L1MB8|LINE|L1 402332 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 456-213 chr3 182668969 182669338 + 2 NA Intergenic Intergenic -124351 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 513-93 chr16 8486231 8486575 + 2 NA Intergenic Intergenic 103435 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 401-53 chr11 79572825 79573166 + 2 NA Intergenic Intergenic -131965 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 259-414 chr8 124094349 124094521 + 2 NA intron (NM_001039112, intron 34 of 40) intron (NM_001039112, intron 34 of 40) -53653 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 383-284 chr4 65632630 65632876 + 2 NA intron (NM_001281767, intron 2 of 16) (TACAATA)n|Simple_repeat|Simple_repeat 36735 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 525-231 chr6 151974608 151975095 + 2 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 165744 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 319-25 chr1 158858820 158859035 + 2 NA Intergenic LTR27C|LTR|ERV1 27576 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 610-163 chr7 55338236 55338634 + 2 NA Intergenic Intergenic -27013 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 560-81 chr2 77186333 77186699 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 200551 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 340-5 chr1 44457394 44457580 + 2 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 33486 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 362-248 chr20 56488505 56488777 + 2 NA intron (NM_001283036, intron 5 of 8) intron (NM_001283036, intron 5 of 8) 20056 NM_001283035 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 348-415 chr5 88513545 88513828 + 2 NA Intergenic Intergenic -74596 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 496-268 chr7 99891363 99891687 + 2 NA 3' UTR (NM_033017, exon 7 of 7) 3' UTR (NM_033017, exon 7 of 7) -14492 NM_001005276 81392 Hs.647523 NM_001005276 ENSG00000244623 OR2AE1 OR2AE2 olfactory receptor family 2 subfamily AE member 1 protein-coding 393-29 chr1 233475197 233475479 + 2 NA Intergenic MER4D|LTR|ERV1 -138768 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 181-148 chr7 41849310 41849420 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -146275 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 286-465 chr8 121995198 121995435 + 2 NA Intergenic Intergenic -353876 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 276-114 chr12 59840640 59840910 + 2 NA Intergenic Intergenic 151405 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 291-346 chr5 46308230 46308397 + 2 NA Intergenic ALR/Alpha|Satellite|centr -611933 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 187-80 chr2 114141654 114141818 + 2 NA Intergenic Intergenic -161752 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 323-492 chr7 43290798 43291079 + 2 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 140043 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 322-59 chr10 48897830 48898068 + 2 NA intron (NM_020945, intron 45 of 61) intron (NM_020945, intron 45 of 61) 16286 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 270-26 chr10 4299538 4299744 + 2 NA Intergenic Intergenic -55729 NR_108040 100652988 Hs.433011 NR_108040 LINC00702 - long intergenic non-protein coding RNA 702 ncRNA 410-96 chr15 57088994 57089249 + 2 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -130309 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 262-262 chr21 29203666 29203837 + 2 NA intron (NR_027072, intron 1 of 1) L1M4|LINE|L1 10257 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 324-483 chr7 15633737 15634016 + 2 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) -34071 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 661-14 chr11 94988013 94988633 + 2 NA intron (NM_018039, intron 2 of 2) intron (NM_018039, intron 2 of 2) 14614 NM_018039 55693 Hs.503598 NM_018039 ENSG00000186280 KDM4D JMJD2D lysine demethylase 4D protein-coding 330-480 chr7 12402931 12403201 + 2 NA intron (NM_001135924, intron 1 of 28) intron (NM_001135924, intron 1 of 28) 799 NM_001135924 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 225-278 chr5 51763350 51763553 + 2 NA Intergenic MIR|SINE|MIR -244580 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 463-7 chr1 60192679 60193004 + 2 NA Intergenic L1MC1|LINE|L1 -119071 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 394-29 chr1 246832076 246832287 + 2 NA Intergenic L1MB8|LINE|L1 42564 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 289-26 chr1 177546958 177547205 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -153443 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 353-297 chr21 24108879 24109225 + 2 NA Intergenic Intergenic 212325 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 346-499 chr8 125186668 125186994 + 2 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 94971 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 292-201 chr2 27183874 27184034 + 2 NA Intergenic HAL1|LINE|L1 -28077 NM_080592 51374 Hs.9527 NM_016085 ENSG00000138085 ATRAID APR--3|APR-3|APR3|C2orf28|HSPC013|PRO240|p18 all-trans retinoic acid induced differentiation factor protein-coding 395-13 chr1 103858329 103858595 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 108621 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 579-65 chr2 16420094 16420514 + 2 NA Intergenic L2b|LINE|L2 245530 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 435-70 chr13 59502890 59503193 + 2 NA Intergenic Intergenic -509677 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 343-57 chr10 85445754 85445973 + 2 NA intron (NR_120670, intron 2 of 2) L2c|LINE|L2 -3729 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 234-342 chr6 65117606 65117758 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -183736 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 312-474 chr7 21598295 21598552 + 2 NA intron (NM_001277115, intron 14 of 81) intron (NM_001277115, intron 14 of 81) 55384 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 278-346 chr5 93112159 93112332 + 2 NA Intergenic L1MB5|LINE|L1 459098 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 332-169 chr15 85301382 85301659 + 2 NA Intergenic L1MC4|LINE|L1 61169 NM_001310153 100133220 Hs.454625 NM_001310153 GOLGA6L3 - golgin A6 family like 3 protein-coding 312-346 chr3 143403615 143403870 + 2 NA intron (NM_173653, intron 12 of 15) L1M4b|LINE|L1 61496 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 230-326 chr6 143467170 143467328 + 2 NA intron (NM_003630, intron 3 of 11) L1MC5|LINE|L1 16444 NM_003630 8504 Hs.7277 NM_003630 ENSG00000034693 PEX3 PBD10A|PBD10B|TRG18 peroxisomal biogenesis factor 3 protein-coding 330-445 chr5 156690494 156690677 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -159710 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 302-212 chr2 67186459 67186698 + 2 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -26830 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 183-20 chr11 15247451 15247598 + 2 NA TTS (NM_001031853) TTS (NM_001031853) 98422 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 255-466 chrX 39334126 39334349 + 2 NA Intergenic Intergenic -6875 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 312-415 chr5 64921722 64922004 + 2 NA intron (NM_005869, intron 11 of 13) L1PA16|LINE|L1 152933 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 293-200 chr2 118280028 118280250 + 2 NA Intergenic Intergenic -93753 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 342-418 chr5 113767657 113767844 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 254056 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 568-187 chr7 146739641 146739992 + 2 NA Intergenic L1MA8|LINE|L1 -34455 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 782-54 chr5 96234010 96234444 + 2 NA intron (NR_130776, intron 1 of 4) L2b|LINE|L2 155089 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 337-133 chr13 49774464 49774798 + 2 NA intron (NM_002267, intron 1 of 16) intron (NM_002267, intron 1 of 16) 18051 NM_002267 3839 Hs.527919 NM_002267 ENSG00000102753 KPNA3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 karyopherin subunit alpha 3 protein-coding 211-4 chr1 37961061 37961178 + 2 NA intron (NM_006802, intron 15 of 16) L3|LINE|CR1 -14062 NR_158628 3633 Hs.449942 NM_005540 ENSG00000204084 INPP5B 5PTase inositol polyphosphate-5-phosphatase B protein-coding 135-60 chr6 64609005 64609120 + 2 NA intron (NM_001292009, intron 24 of 43) L1MC1|LINE|L1 -692356 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 222-54 chr10 129236998 129237155 + 2 NA Intergenic Intergenic -230165 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 298-289 chr3 36293064 36293252 + 2 NA Intergenic L1MD|LINE|L1 -87329 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 200-80 chr14 84212769 84212912 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -1059092 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 257-312 chr5 8288480 8288654 + 2 NA Intergenic Intergenic 168997 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 188-132 chr3 81137260 81137413 + 2 NA Intergenic Intergenic 143468 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 320-546 chr8 77855282 77855453 + 2 NA Intergenic L1MC1|LINE|L1 404670 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 718-75 chr5 94224708 94225202 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -113256 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 245-6 chr1 96453711 96453847 + 2 NA Intergenic Intergenic -79654 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 300-186 chr2 45323734 45323946 + 2 NA Intergenic Intergenic -68899 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 487-239 chr5 141093339 141093737 + 2 NA Intergenic L1MC2|LINE|L1 -1077 NM_018936 56133 Hs.533023 NM_018936 ENSG00000112852 PCDHB2 PCDH-BETA2 protocadherin beta 2 protein-coding 135-42 chr21 42223463 42223574 + 2 NA intron (NM_207174, intron 1 of 14) intron (NM_207174, intron 1 of 14) 3620 NM_207174 9619 Hs.124649 NM_004915 ENSG00000160179 ABCG1 ABC8|WHITE1 ATP binding cassette subfamily G member 1 protein-coding 445-292 chrX 106251864 106252249 + 2 NA Intergenic L1MA1|LINE|L1 83751 NM_152423 139221 Hs.592221 NM_152423 ENSG00000157502 PWWP3B MUM1L1 PWWP domain containing 3B protein-coding 280-102 chr12 129379826 129380035 + 2 NA intron (NM_133448, intron 3 of 8) Kanga1a|DNA|TcMar-Tc2 171329 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 875-6 chr12 57336352 57337038 + 2 NA intron (NM_001351217, intron 1 of 21) L1PREC2|LINE|L1 5079 NM_001330122 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 280-199 chr2 82331233 82331390 + 2 NA Intergenic Intergenic -525492 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 397-216 chr4 8407292 8407632 + 2 NA intron (NM_003501, intron 6 of 17) MLT1C|LTR|ERVL-MaLR 33261 NM_003501 8310 Hs.479122 NM_003501 ENSG00000087008 ACOX3 - acyl-CoA oxidase 3, pristanoyl protein-coding 314-138 chr12 119149845 119150084 + 2 NA intron (NM_194286, intron 9 of 12) intron (NM_194286, intron 9 of 12) 26520 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 551-42 chr12 37849846 37850262 + 2 NA Intergenic ALR/Alpha|Satellite|centr -466720 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 742-36 chr18 45777217 45777752 + 2 NA Intergenic Intergenic -48191 NM_213602 284266 Hs.287692 NM_213602 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig like lectin 15 protein-coding 244-243 chr3 179957183 179957335 + 2 NA intron (NM_001349396, intron 1 of 13) intron (NM_001349396, intron 1 of 13) 16966 NM_001349406 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 233-204 chr20 9857964 9858134 + 2 NA Intergenic L1ME3A|LINE|L1 -18973 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 315-530 chrX 78302840 78303002 + 2 NA intron (NM_006639, intron 1 of 2) L1MA2|LINE|L1 24690 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 488-90 chr15 56649044 56649475 + 2 NA intron (NM_001002843, intron 18 of 20) intron (NM_001002843, intron 18 of 20) 84827 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 438-80 chr15 80294035 80294398 + 2 NA intron (NR_033833, intron 1 of 2) AluSz|SINE|Alu -42003 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 125-62 chr7 5198232 5198349 + 2 NA intron (NM_001278299, intron 2 of 12) intron (NM_001278299, intron 2 of 12) 8057 NM_001033518 26100 Hs.122363 NM_015610 ENSG00000157954 WIPI2 ATG18B|Atg21|CGI-50|IDDSSA|WIPI-2 WD repeat domain, phosphoinositide interacting 2 protein-coding 445-95 chr17 70986866 70987239 + 2 NA Intergenic MER39|LTR|ERV1 215127 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 333-48 chr10 19066298 19066625 + 2 NA intron (NM_001142308, intron 1 of 39) MIRb|SINE|MIR 17660 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 245-92 chr12 23511741 23511948 + 2 NA Intergenic Intergenic 72742 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 545-244 chr8 124911662 124912198 + 2 NA Intergenic Intergenic -30078 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 366-82 chr11 79913314 79913599 + 2 NA Intergenic Intergenic -472426 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 284-423 chr8 136596939 136597184 + 2 NA intron (NR_147196, intron 2 of 5) (TA)n|Simple_repeat|Simple_repeat 66263 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 153-89 chr7 11833303 11833407 + 2 NA Intergenic Intergenic -1157 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 447-256 chr8 33977740 33978099 + 2 NA Intergenic Intergenic -377813 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 407-86 chr14 80122790 80123053 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -88498 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 239-289 chr4 126824550 126824752 + 2 NA Intergenic L1ME3G|LINE|L1 -808306 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 224-347 chr9 19959309 19959472 + 2 NA Intergenic Intergenic -172371 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 328-82 chr11 43703529 43703825 + 2 NA intron (NM_016142, intron 1 of 10) L1MA1|LINE|L1 22939 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 249-164 chr18 36366921 36367157 + 2 NA intron (NM_001281740, intron 2 of 28) intron (NM_001281740, intron 2 of 28) 69326 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 962-8 chr17 69981785 69982310 + 2 NA intron (NR_110875, intron 3 of 4) intron (NR_110875, intron 3 of 4) 20340 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 317-101 chr12 10609437 10609705 + 2 NA intron (NR_135120, intron 3 of 5) intron (NR_135120, intron 3 of 5) 3407 NM_001300739 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 204-311 chr9 122722389 122722547 + 2 NA Intergenic L1M5|LINE|L1 -1522 NM_001005235 254973 Hs.626838 NM_001005235 ENSG00000136939 OR1L4 OR1L5|OR9-29|OR9-E|OST046 olfactory receptor family 1 subfamily L member 4 protein-coding 450-291 chr8 5027147 5027458 + 2 NA Intergenic L2a|LINE|L2 -32388 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 276-378 chr5 110622201 110622407 + 2 NA intron (NM_001039763, intron 7 of 13) intron (NM_001039763, intron 7 of 13) 104367 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 395-72 chr12 60676441 60676752 + 2 NA Intergenic L1MA5A|LINE|L1 987226 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 146-30 chr15 46390991 46391119 + 2 NA Intergenic L1MA7|LINE|L1 685860 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 249-47 chr10 49064700 49064869 + 2 NA intron (NM_001031746, intron 4 of 7) intron (NM_001031746, intron 4 of 7) 50738 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 418-164 chr3 101053365 101053608 + 2 NA Intergenic Intergenic -59996 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 266-383 chr6 168723482 168723623 + 2 NA Intergenic Intergenic 240830 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 405-37 chr10 83314320 83314577 + 2 NA Intergenic Intergenic 362641 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 570-69 chr15 63458565 63458958 + 2 NA Intergenic Intergenic -45750 NM_001256702 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 358-519 chr9 112512179 112512512 + 2 NA intron (NM_133465, intron 1 of 3) L1ME1|LINE|L1 -24701 NM_001350649 100133204 Hs.662552 NM_001350649 C9orf147 - chromosome 9 open reading frame 147 protein-coding 119-48 chr3 88000798 88000883 + 2 NA Intergenic Intergenic 18264 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 423-149 chr20 103362 103699 + 2 NA Intergenic L1PA16|LINE|L1 15858 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 442-39 chr10 131656807 131657124 + 2 NA Intergenic Intergenic 133234 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 413-314 chr8 128937569 128937937 + 2 NA Intergenic Intergenic 28248 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 319-162 chr15 86503127 86503398 + 2 NA intron (NM_152336, intron 18 of 24) L1MB7|LINE|L1 -186294 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 315-474 chr8 68468664 68468946 + 2 NA exon (NM_052958, exon 4 of 14) exon (NM_052958, exon 4 of 14) -137314 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 815-14 chr13 36257759 36258361 + 2 NA intron (NM_001198910, intron 2 of 15) intron (NM_001198910, intron 2 of 15) 39754 NM_001144984 728591 Hs.656745 NM_001144981 ENSG00000242715 CCDC169 C13orf38 coiled-coil domain containing 169 protein-coding 323-241 chr2 45376774 45376995 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -121943 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 207-215 chr4 60114229 60114374 + 2 NA Intergenic Intergenic -808318 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 206-57 chr12 61162768 61162927 + 2 NA Intergenic L1PB4|LINE|L1 1029992 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 206-155 chr3 30920567 30920719 + 2 NA Intergenic LTR1D|LTR|ERV1 -25982 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 239-369 chr7 37730552 37730703 + 2 NA intron (NM_181791, intron 3 of 3) intron (NM_181791, intron 3 of 3) 46861 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 517-164 chr21 29891035 29891442 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 48758 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 337-586 chr9 90262162 90262363 + 2 NA Intergenic LTR8B|LTR|ERV1 171227 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 328-599 chr9 13833643 13833873 + 2 NA Intergenic L1MC5|LINE|L1 -94213 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 370-157 chr15 49790740 49791008 + 2 NA Intergenic L1ME1|LINE|L1 169826 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 311-51 chr10 45544513 45544753 + 2 NA intron (NM_145021, intron 1 of 6) L1ME1|LINE|L1 -9262 NM_001282866 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 277-298 chr4 141102842 141103071 + 2 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 30513 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 337-253 chr2 61952046 61952315 + 2 NA intron (NM_152516, intron 1 of 2) LTR8B|LTR|ERV1 46538 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 350-29 chr1 189264112 189264432 + 2 NA Intergenic Intergenic 1211738 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 541-133 chr2 237643575 237643968 + 2 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) 16184 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 516-117 chr2 30449022 30449412 + 2 NA intron (NM_001304446, intron 1 of 5) intron (NM_001304446, intron 1 of 5) 1971 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 265-349 chr6 158935617 158935825 + 2 NA Intergenic Intergenic 47244 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 186-143 chr6 101916708 101916818 + 2 NA intron (NM_001166247, intron 11 of 16) intron (NM_001166247, intron 11 of 16) 517778 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 567-89 chr2 122589652 122589984 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 483663 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 346-380 chr5 14054353 14054604 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -88864 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 417-197 chr4 45269316 45269642 + 2 NA Intergenic L1MEc|LINE|L1 -542845 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 277-447 chr9 86901829 86902023 + 2 NA Intergenic Intergenic 45580 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 300-407 chr6 153465974 153466183 + 2 NA Intergenic Intergenic -334796 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 444-178 chr4 116022956 116023351 + 2 NA Intergenic L1MA9|LINE|L1 -276572 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 223-340 chr8 63428246 63428421 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -37516 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 278-71 chr12 30473339 30473507 + 2 NA Intergenic Intergenic 203821 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 392-275 chr6 40779593 40779870 + 2 NA Intergenic Intergenic -192367 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 273-167 chr16 77347791 77347960 + 2 NA intron (NM_199355, intron 10 of 22) MIR|SINE|MIR 87159 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 255-231 chr20 48610193 48610405 + 2 NA Intergenic (TCCT)n|Simple_repeat|Simple_repeat 217700 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 290-191 chr19 36817373 36817523 + 2 NA TTS (NM_001242802) TTS (NM_001242802) 19885 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 153-87 chr6 137856866 137856947 + 2 NA intron (NR_049793, intron 3 of 3) intron (NR_049793, intron 3 of 3) -10353 NM_001270507 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 663-113 chr8 53768967 53769559 + 2 NA intron (NM_213620, intron 11 of 13) L1M5|LINE|L1 73779 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 444-134 chr2 224116565 224116953 + 2 NA Intergenic L1PB3|LINE|L1 -77440 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 153-88 chr7 9076420 9076513 + 2 NA Intergenic L1MEc|LINE|L1 -557804 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 210-286 chr8 84725260 84725432 + 2 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 19419 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 539-25 chr10 53657459 53657974 + 2 NA Intergenic Intergenic -828514 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 457-49 chr12 39313516 39313806 + 2 NA intron (NM_001173465, intron 27 of 33) intron (NM_001173465, intron 27 of 33) 129459 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 298-29 chr1 234579165 234579446 + 2 NA Intergenic Intergenic 30220 NM_001077397 359948 Hs.350268 NM_182972 ENSG00000168264 IRF2BP2 CVID14 interferon regulatory factor 2 binding protein 2 protein-coding 334-549 chr8 129793327 129793502 + 2 NA Intergenic L1MA3|LINE|L1 -6790 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 281-365 chr5 81085927 81086124 + 2 NA intron (NM_006909, intron 8 of 26) intron (NM_006909, intron 8 of 26) -125118 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 262-225 chr2 140878123 140878327 + 2 NA intron (NM_018557, intron 25 of 90) L1MC5a|LINE|L1 -291540 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 291-399 chr7 21350696 21350957 + 2 NA Intergenic Intergenic -77257 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 340-252 chr2 67231030 67231213 + 2 NA intron (NR_110568, intron 2 of 3) LTR1D|LTR|ERV1 -15802 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 434-126 chr19 24361608 24361881 + 2 NA Intergenic ALR/Alpha|Satellite|centr -198297 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 433-286 chr8 117886865 117887234 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 33864 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 289-200 chr19 39284531 39284747 + 2 NA Intergenic L1MB3|LINE|L1 -11768 NM_172140 282618 Hs.406745 NM_172140 ENSG00000182393 IFNL1 IL-29|IL29 interferon lambda 1 protein-coding 578-189 chr9 15316589 15317138 + 2 NA Intergenic LTR8|LTR|ERV1 -9503 NM_001168340 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 382-292 chr4 40289787 40290099 + 2 NA Intergenic MIRc|SINE|MIR -17242 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 345-379 chr4 32855304 32855618 + 2 NA Intergenic Intergenic 504423 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 393-285 chr5 118455874 118456120 + 2 NA intron (NR_104610, intron 9 of 9) L1M5|LINE|L1 106120 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 309-94 chr11 131709086 131709278 + 2 NA intron (NM_001352006, intron 2 of 9) L2a|LINE|L2 -45626 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 215-87 chr14 77931202 77931344 + 2 NA intron (NR_158988, intron 9 of 10) intron (NR_158988, intron 9 of 10) 131164 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 224-212 chr3 159479905 159480058 + 2 NA intron (NM_001197108, intron 1 of 6) MIRb|SINE|MIR 197335 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 280-112 chr13 72055886 72056060 + 2 NA Intergenic L1MB3|LINE|L1 -188769 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 314-322 chr2 213899405 213899641 + 2 NA intron (NR_047660, intron 10 of 14) L3|LINE|CR1 141456 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 330-535 chr8 132330102 132330320 + 2 NA intron (NM_004519, intron 1 of 14) MLT1D|LTR|ERVL-MaLR 117051 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 458-275 chr9 119925702 119925944 + 2 NA Intergenic L2c|LINE|L2 -9237 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 303-149 chr15 93543333 93543532 + 2 NA Intergenic Intergenic -313128 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 427-184 chr4 66651687 66652051 + 2 NA Intergenic Intergenic 375045 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 238-6 chr1 50410930 50411146 + 2 NA Intergenic L1ME1|LINE|L1 12405 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 310-555 chr9 88906692 88906894 + 2 NA Intergenic L1M5|LINE|L1 -84070 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 335-75 chr10 118031811 118032027 + 2 NA intron (NM_014904, intron 3 of 4) intron (NM_014904, intron 3 of 4) -14902 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 348-464 chr6 115216335 115216653 + 2 NA Intergenic L1MA7|LINE|L1 427341 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 211-287 chr8 9503414 9503569 + 2 NA Intergenic Intergenic -52421 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 246-29 chr10 9247443 9247609 + 2 NA intron (NR_120635, intron 4 of 4) L1MEc|LINE|L1 -28087 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 246-323 chr5 41306358 41306568 + 2 NA TTS (NM_001005473) TTS (NM_001005473) -44994 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 478-296 chr8 110465470 110465860 + 2 NA Intergenic Intergenic -489894 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 842-27 chr2 232688985 232689557 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -8060 NM_001103148 26058 Hs.565319 NM_015575 ENSG00000204120 GIGYF2 GYF2|PARK11|PERQ2|PERQ3|TNRC15 GRB10 interacting GYF protein 2 protein-coding 942-24 chr3 96393677 96394355 + 2 NA Intergenic L1MEf|LINE|L1 34052 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 406-43 chr11 10079537 10079780 + 2 NA intron (NM_030962, intron 2 of 39) L1M2|LINE|L1 214549 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 287-279 chr4 39930574 39930744 + 2 NA intron (NM_001100399, intron 2 of 32) L1M5|LINE|L1 47252 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 337-476 chr6 34959115 34959440 + 2 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 70022 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 369-423 chr8 130502766 130502988 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -59203 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 277-295 chr4 114926652 114926811 + 2 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 186889 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 257-393 chr7 89685418 89685631 + 2 NA Intergenic Intergenic -433876 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 380-399 chr8 96392962 96393225 + 2 NA Intergenic L2b|LINE|L2 -5655 NR_125828 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 753-16 chr12 38447683 38448377 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 131256 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 296-224 chr2 67399304 67399492 + 2 NA intron (NM_019002, intron 2 of 5) intron (NM_019002, intron 2 of 5) 2065 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 259-76 chr11 84159021 84159271 + 2 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 114134 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 321-517 chr7 16669869 16670176 + 2 NA intron (NM_001362717, intron 2 of 11) intron (NM_001362717, intron 2 of 11) 8808 NM_001362719 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 275-112 chr14 66438203 66438399 + 2 NA Intergenic L1MEc|LINE|L1 -48070 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 342-241 chr2 80839356 80839678 + 2 NA Intergenic L1MA2|LINE|L1 526138 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 387-200 chr20 24477034 24477338 + 2 NA intron (NR_147606, intron 1 of 4) intron (NR_147606, intron 1 of 4) 7225 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 421-70 chr13 89781542 89781842 + 2 NA Intergenic Intergenic -217279 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 358-488 chr8 112148214 112148541 + 2 NA Intergenic Intergenic -495116 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 315-212 chr19 51503939 51504143 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -2241 NM_053003 89858 Hs.249741 NM_033329 ENSG00000254521 SIGLEC12 S2V|SIGLECL1|SLG|Siglec-XII sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding 483-194 chr4 179827080 179827496 + 2 NA Intergenic Intergenic 1331861 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 347-482 chr7 117955625 117955929 + 2 NA Intergenic Intergenic -82336 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 362-45 chr10 15095139 15095385 + 2 NA TTS (NR_160789) TTS (NR_160789) -1918 NM_001265601 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 243-109 chr13 53577907 53578084 + 2 NA Intergenic Intergenic -237424 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 664-64 chr20 50295890 50296395 + 2 NA intron (NR_034124, intron 1 of 4) intron (NR_034124, intron 1 of 4) 3422 NR_034124 284751 Hs.282325 NM_001025463 ENSG00000203999 LINC01270 - long intergenic non-protein coding RNA 1270 ncRNA 230-201 chr20 9030210 9030379 + 2 NA Intergenic Intergenic -38760 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 316-156 chr13 64637486 64637742 + 2 NA Intergenic Intergenic -561603 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 205-38 chr10 75700284 75700438 + 2 NA intron (NR_131178, intron 1 of 7) Charlie7|DNA|hAT-Charlie -12094 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 605-12 chr10 27519782 27520281 + 2 NA intron (NR_046172, intron 2 of 5) L1M3|LINE|L1 15727 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 324-173 chr14 88887122 88887369 + 2 NA Intergenic L1ME1|LINE|L1 62594 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 255-330 chr5 60186209 60186398 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 186360 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 283-32 chr1 203994612 203994867 + 2 NA Intergenic Intergenic 46525 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 517-144 chr2 147271983 147272415 + 2 NA Intergenic Intergenic -572318 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 467-290 chr8 141677092 141677479 + 2 NA Intergenic Intergenic 109028 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 373-29 chr1 181286841 181287112 + 2 NA Intergenic L1MEc|LINE|L1 50588 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 557-91 chr2 50939924 50940437 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 91952 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 351-2 chr1 37773819 37774108 + 2 NA Intergenic AluJb|SINE|Alu -8811 NM_173641 284656 Hs.129435 NM_173641 ENSG00000183317 EPHA10 - EPH receptor A10 protein-coding 217-368 chr8 107997684 107997832 + 2 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 84181 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 289-296 chr3 36477213 36477459 + 2 NA intron (NM_001292049, intron 2 of 8) intron (NM_001292049, intron 2 of 8) 96849 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 285-446 chr9 17220451 17220631 + 2 NA intron (NM_001365029, intron 2 of 25) L1PA12|LINE|L1 85501 NM_001114395 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 346-246 chr2 86501912 86502136 + 2 NA Intergenic Intergenic 60563 NM_001146688 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 245-136 chr14 87545076 87545229 + 2 NA Intergenic Intergenic 110142 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 375-433 chr8 139000654 139000989 + 2 NA Intergenic Intergenic -86780 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 363-179 chr17 56744913 56745184 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 88872 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 361-212 chr2 50614518 50614833 + 2 NA intron (NM_001330093, intron 8 of 22) A-rich|Low_complexity|Low_complexity 81587 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 315-223 chr2 11042868 11043032 + 2 NA Intergenic Intergenic 89226 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 437-58 chr13 43748530 43748798 + 2 NA intron (NM_001347969, intron 1 of 16) MIRb|SINE|MIR 38308 NM_001347968 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 359-140 chr14 47203507 47203809 + 2 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 139588 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 349-432 chr5 156860498 156860680 + 2 NA Intergenic L1MC4|LINE|L1 10294 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 226-182 chr2 138208946 138209134 + 2 NA Intergenic Intergenic 107156 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 541-4 chr1 60079085 60079574 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -5559 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 302-488 chr9 106108967 106109240 + 2 NA Intergenic Intergenic 414562 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 420-131 chr2 46245092 46245423 + 2 NA Intergenic L1ME1|LINE|L1 -52150 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 262-322 chr4 101319056 101319284 + 2 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 11244 NR_031656 100302193 NR_031656 ENSG00000221265 MIR1255A MIRN1255A|hsa-mir-1255a microRNA 1255a ncRNA 420-78 chr14 47654184 47654455 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 20635 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 404-295 chr7 88396009 88396361 + 2 NA Intergenic Intergenic -89291 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 553-181 chr4 124656250 124656660 + 2 NA Intergenic L1ME1|LINE|L1 56277 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 398-82 chr12 118805020 118805229 + 2 NA Intergenic L1PA15|LINE|L1 28412 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 367-441 chr8 29691162 29691439 + 2 NA Intergenic L1MEd|LINE|L1 56809 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 221-14 chr1 107463390 107463558 + 2 NA intron (NM_001113226, intron 6 of 6) intron (NM_001113226, intron 6 of 6) 225025 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 426-53 chr11 109801297 109801585 + 2 NA Intergenic L1ME4a|LINE|L1 -291951 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 322-223 chr18 66237350 66237618 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 366606 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 344-82 chr11 94206642 94206854 + 2 NA Intergenic L1MA8|LINE|L1 77907 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 456-195 chr3 13760898 13761198 + 2 NA Intergenic Kanga1|DNA|TcMar-Tc2 110327 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 674-60 chr3 41129690 41130109 + 2 NA Intergenic L1MEi|LINE|L1 -69606 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 229-363 chr7 55856337 55856497 + 2 NA intron (NM_207366, intron 2 of 9) AluSx1|SINE|Alu 6335 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 254-244 chr3 63390327 63390531 + 2 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) -52883 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 529-147 chr3 158337678 158338175 + 2 NA intron (NM_001271838, intron 5 of 9) intron (NM_001271838, intron 5 of 9) -188782 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 520-153 chr2 126374334 126374625 + 2 NA Intergenic Intergenic -256494 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 214-196 chr22 28669630 28669779 + 2 NA intron (NM_001145418, intron 1 of 22) intron (NM_001145418, intron 1 of 22) 10161 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 358-441 chr7 62938611 62938886 + 2 NA Intergenic ALR/Alpha|Satellite|centr 365308 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 356-228 chr2 30783496 30783790 + 2 NA intron (NM_144575, intron 2 of 22) intron (NM_144575, intron 2 of 22) 23803 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 301-60 chr11 37554656 37554867 + 2 NA Intergenic Intergenic -383840 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 229-193 chr2 115235916 115236095 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -73232 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 248-64 chr11 55635019 55635200 + 2 NA Intergenic Intergenic -3249 NM_001004124 81300 NM_001004124 ENSG00000181927 OR4P4 OR4P3P olfactory receptor family 4 subfamily P member 4 protein-coding 259-200 chr2 77214783 77214986 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 228919 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 429-215 chr4 116048179 116048402 + 2 NA Intergenic L1MD|LINE|L1 -251435 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 207-185 chr3 31087765 31087934 + 2 NA Intergenic Intergenic 73938 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 453-45 chr11 129431625 129431882 + 2 NA intron (NM_003658, intron 1 of 3) L1ME1|LINE|L1 55905 NM_003658 8538 Hs.591944 NM_003658 ENSG00000043039 BARX2 - BARX homeobox 2 protein-coding 273-339 chr4 148625868 148626102 + 2 NA Intergenic L1MB1|LINE|L1 -181287 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 310-26 chr1 190946695 190946965 + 2 NA Intergenic Intergenic 281668 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 932-20 chr4 153977415 153978005 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -188627 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 320-26 chr1 173058569 173058880 + 2 NA Intergenic Intergenic -7761 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 314-374 chr3 63668976 63669148 + 2 NA Intergenic Intergenic 16387 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 785-41 chr4 81491280 81491927 + 2 NA Intergenic AluSg|SINE|Alu -19696 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 242-157 chr19 39986463 39986616 + 2 NA Intergenic L1MA4A|LINE|L1 -10521 NM_178544 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 459-285 chr7 87025114 87025542 + 2 NA intron (NM_001142749, intron 1 of 21) intron (NM_001142749, intron 1 of 21) 14906 NM_001291990 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 460-229 chr4 163914883 163915264 + 2 NA intron (NM_001166373, intron 2 of 7) L2|LINE|L2 282638 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 257-355 chr6 65384856 65385026 + 2 NA intron (NM_198283, intron 6 of 9) intron (NM_198283, intron 6 of 9) 83523 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 438-270 chr8 61859861 61860148 + 2 NA Intergenic L1MB7|LINE|L1 -29835 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 207-54 chr11 43029017 43029188 + 2 NA Intergenic Intergenic 240267 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 320-418 chr5 12036221 12036391 + 2 NA Intergenic L1PB1|LINE|L1 -131860 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 440-11 chr1 169886191 169886483 + 2 NA intron (NM_181093, intron 2 of 13) intron (NM_181093, intron 2 of 13) 7559 NM_020423 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 519-62 chr14 67315303 67315610 + 2 NA intron (NM_001256550, intron 9 of 14) AluYj4|SINE|Alu 44348 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 417-217 chr5 43828830 43829164 + 2 NA Intergenic L1M2|LINE|L1 -225767 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 289-401 chr5 180268283 180268522 + 2 NA intron (NM_001364608, intron 4 of 12) intron (NM_001364608, intron 4 of 12) 12206 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 525-282 chr9 96721211 96721622 + 2 NA Intergenic Intergenic -4405 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 544-202 chr6 159210438 159210929 + 2 NA intron (NM_032532, intron 4 of 22) intron (NM_032532, intron 4 of 22) -40676 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 300-140 chr16 50873834 50874060 + 2 NA Intergenic L1MB5|LINE|L1 -4826 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 387-268 chr5 11876974 11877254 + 2 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 27332 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 217-282 chr5 8023676 8023820 + 2 NA Intergenic Intergenic 154600 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 170-127 chr6 156740540 156740643 + 2 NA Intergenic L1MEd|LINE|L1 -37264 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 272-253 chr3 2677669 2677915 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -214423 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 298-427 chr7 36566089 36566313 + 2 NA intron (NM_001177507, intron 12 of 19) intron (NM_001177507, intron 12 of 19) 33919 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 338-72 chr10 86782188 86782390 + 2 NA intron (NM_004329, intron 1 of 12) L1MB2|LINE|L1 25650 NM_004329 657 Hs.524477 NM_004329 ENSG00000107779 BMPR1A 10q23del|ACVRLK3|ALK3|CD292|SKR5 bone morphogenetic protein receptor type 1A protein-coding 452-137 chr2 141078100 141078414 + 2 NA intron (NM_018557, intron 7 of 90) intron (NM_018557, intron 7 of 90) -491572 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 255-143 chr16 35927987 35928130 + 2 NA Intergenic ALR/Alpha|Satellite|centr 181506 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 788-58 chr9 112047698 112048267 + 2 NA intron (NM_001282640, intron 15 of 17) MLT1E3|LTR|ERVL-MaLR 115882 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 388-184 chr20 33171195 33171501 + 2 NA intron (NM_001319164, intron 2 of 8) L1PA8|LINE|L1 3189 NM_080574 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 526-40 chr11 54902538 54902922 + 2 NA Intergenic ALR/Alpha|Satellite|centr 195898 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 227-159 chr2 22875554 22875728 + 2 NA Intergenic L1MCc|LINE|L1 339162 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 408-358 chr9 107833920 107834168 + 2 NA Intergenic Intergenic -344275 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 116-8 chr11 102324396 102324487 + 2 NA 5' UTR (NM_001165, exon 2 of 9) 5' UTR (NM_001165, exon 2 of 9) 6957 NM_182962 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 296-217 chr2 44569684 44569929 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 207859 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 281-177 chr18 35992511 35992719 + 2 NA 3' UTR (NM_018170, exon 7 of 7) 3' UTR (NM_018170, exon 7 of 7) 19936 NM_031446 83608 Hs.37883 NM_031446 ENSG00000141428 C18orf21 HsT3108|PNAS-124|PNAS-131|XTP13 chromosome 18 open reading frame 21 protein-coding 359-6 chr1 37272947 37273282 + 2 NA Intergenic Intergenic 111551 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 272-327 chr5 7430077 7430257 + 2 NA intron (NM_020546, intron 2 of 24) L1MEc|LINE|L1 34029 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 759-55 chr4 178029658 178030123 + 2 NA Intergenic Intergenic -121954 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 355-157 chr14 65934768 65935097 + 2 NA Intergenic Intergenic 463830 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 226-212 chr3 4907729 4907918 + 2 NA intron (NR_125916, intron 1 of 2) intron (NR_125916, intron 1 of 2) -1322 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 489-272 chrX 58035399 58035845 + 2 NA Intergenic L1PA10|LINE|L1 -124989 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 314-384 chr3 108775262 108775546 + 2 NA Intergenic Intergenic -18121 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 379-317 chr7 47831387 47831673 + 2 NA intron (NM_138295, intron 41 of 56) MLT2B4|LTR|ERVL 36239 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 342-139 chr14 30332659 30332981 + 2 NA Intergenic Intergenic -226303 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 223-113 chr16 72177139 72177294 + 2 NA Intergenic Intergenic -4766 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 960-36 chr6 157505524 157506251 + 2 NA intron (NM_024630, intron 1 of 8) CR1_Mam|LINE|CR1 -23245 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 366-285 chr3 137345417 137345772 + 2 NA Intergenic Intergenic 387611 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 335-493 chr7 16350983 16351291 + 2 NA intron (NM_001101417, intron 2 of 8) L1M3de|LINE|L1 70401 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 314-100 chr11 73009814 73010000 + 2 NA intron (NM_014824, intron 4 of 19) L1M2|LINE|L1 132411 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 500-34 chr10 93132543 93132865 + 2 NA Intergenic Intergenic 58811 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 469-136 chr2 97981419 97981786 + 2 NA intron (NM_015348, intron 1 of 40) intron (NM_015348, intron 1 of 40) 14346 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 474-300 chr8 137747138 137747444 + 2 NA Intergenic Intergenic -333703 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 396-306 chr6 23548520 23548802 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -577554 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 298-150 chr15 97354850 97355035 + 2 NA Intergenic MIRb|SINE|MIR 166869 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 248-194 chr2 104241999 104242221 + 2 NA Intergenic L1MA5|LINE|L1 166222 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 558-177 chr5 82671931 82672459 + 2 NA Intergenic LTR88c|LTR|Gypsy? -167960 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 246-227 chr20 7585145 7585371 + 2 NA Intergenic Intergenic 213650 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 310-441 chr6 34520152 34520340 + 2 NA intron (NM_001199583, intron 1 of 9) intron (NM_001199583, intron 1 of 9) 5374 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 456-9 chr1 78869790 78870086 + 2 NA Intergenic Intergenic 136792 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 332-70 chr10 88319893 88320149 + 2 NA intron (NM_018363, intron 5 of 6) L1PA17|LINE|L1 263297 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 241-198 chr2 137502996 137503154 + 2 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 424857 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 427-104 chr19 51943784 51944075 + 2 NA intron (NM_001031721, intron 5 of 5) intron (NM_001031721, intron 5 of 5) -5205 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 165-8 chr10 34502648 34502794 + 2 NA intron (NM_001184789, intron 3 of 22) 7SLRNA|srpRNA|srpRNA 312575 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 374-82 chr12 132079650 132079882 + 2 NA 3' UTR (NM_015409, exon 53 of 53) 3' UTR (NM_015409, exon 53 of 53) -4517 NR_003290 347918 Hs.122115 NM_182613 ENSG00000185684 EP400P1 EP400NL EP400 pseudogene 1 pseudo 276-15 chr1 106532114 106532263 + 2 NA Intergenic Intergenic -286051 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 369-448 chr9 111541296 111541651 + 2 NA intron (NM_001007169, intron 5 of 5) intron (NM_001007169, intron 5 of 5) 16294 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 360-354 chr5 28385168 28385507 + 2 NA Intergenic AluSq2|SINE|Alu -97672 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 208-19 chr10 18092417 18092540 + 2 NA Intergenic Intergenic -47946 NM_201572 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 399-66 chr11 127961161 127961484 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -247444 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 442-162 chr20 47075342 47075681 + 2 NA intron (NM_172110, intron 7 of 13) intron (NM_172110, intron 7 of 13) -91456 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 359-518 chrX 36440111 36440406 + 2 NA promoter-TSS (NR_110412) promoter-TSS (NR_110412) 34 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 495-260 chr8 126907215 126907544 + 2 NA Intergenic Intergenic -105775 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 346-6 chr1 66540224 66540493 + 2 NA intron (NM_001350218, intron 1 of 22) intron (NM_001350218, intron 1 of 22) 6205 NM_032291 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 210-77 chr14 76860300 76860427 + 2 NA intron (NM_194287, intron 10 of 13) MARNA|DNA|TcMar-Mariner 33955 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 349-453 chr6 120269552 120269794 + 2 NA Intergenic L1MEf|LINE|L1 254494 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 306-464 chr7 37219983 37220157 + 2 NA intron (NM_001206480, intron 10 of 21) intron (NM_001206480, intron 10 of 21) 133598 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 207-75 chr14 29184415 29184579 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -398710 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 317-123 chr13 58281125 58281371 + 2 NA Intergenic Intergenic -48131 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 273-86 chr11 112609198 112609447 + 2 NA Intergenic Intergenic -53520 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 336-185 chr15 97557583 97557829 + 2 NA intron (NR_110756, intron 2 of 3) intron (NR_110756, intron 2 of 3) 2992 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 606-101 chr3 1147422 1147978 + 2 NA intron (NM_001349350, intron 3 of 24) intron (NM_001349350, intron 3 of 24) 54676 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 252-225 chr2 208062941 208063186 + 2 NA Intergenic L1M5|LINE|L1 -37536 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 390-337 chr6 130219076 130219293 + 2 NA intron (NM_001017373, intron 1 of 11) intron (NM_001017373, intron 1 of 11) -3299 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 197-217 chr8 131627271 131627458 + 2 NA Intergenic L1MA9|LINE|L1 -276729 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 387-305 chr6 19511993 19512230 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 62290 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 417-56 chr12 24388646 24388982 + 2 NA intron (NM_152989, intron 2 of 17) L1MB8|LINE|L1 165543 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 423-44 chr11 20300586 20300974 + 2 NA Intergenic L1ME1|LINE|L1 -62905 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 317-84 chr11 70938781 70938961 + 2 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -66503 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 228-279 chr5 145025312 145025526 + 2 NA Intergenic L2a|LINE|L2 809923 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 546-45 chr11 115488545 115488990 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 15648 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 364-266 chr3 7366603 7366918 + 2 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 168524 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 291-85 chr11 114242016 114242208 + 2 NA intron (NM_006006, intron 4 of 6) intron (NM_006006, intron 4 of 6) -53701 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 328-449 chr5 54141966 54142209 + 2 NA intron (NM_019087, intron 3 of 4) L1ME1|LINE|L1 168486 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 258-285 chr4 44956688 44956882 + 2 NA Intergenic L1PA16|LINE|L1 -230151 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 553-251 chrX 87860484 87860956 + 2 NA Intergenic Intergenic 342918 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 328-331 chr21 36302830 36303097 + 2 NA Intergenic L1ME4b|LINE|L1 -17226 NM_001320446 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 433-93 chr15 62031381 62031723 + 2 NA intron (NM_001018088, intron 5 of 81) intron (NM_001018088, intron 5 of 81) 28895 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 383-122 chr14 103955691 103955980 + 2 NA intron (NM_153046, intron 2 of 35) intron (NM_153046, intron 2 of 35) -13306 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 161-130 chr8 124415884 124415995 + 2 NA Intergenic MER21C|LTR|ERVL -34881 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 359-270 chr2 217678874 217679104 + 2 NA intron (NR_026597, intron 1 of 12) MLT1H1|LTR|ERVL-MaLR 77604 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 404-270 chr6 40390554 40390781 + 2 NA TTS (NM_020737) TTS (NM_020737) 12330 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 256-345 chr5 155835270 155835468 + 2 NA Intergenic Intergenic -491388 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 380-94 chr12 40080790 40081045 + 2 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 25164 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 580-137 chr4 59323569 59324035 + 2 NA Intergenic Intergenic 310229 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 326-454 chr6 56068545 56068828 + 2 NA intron (NM_030820, intron 22 of 29) intron (NM_030820, intron 22 of 29) 22976 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 571-5 chr1 164995084 164995578 + 2 NA Intergenic MIR|SINE|MIR -220690 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 366-117 chr13 54405356 54405681 + 2 NA Intergenic Intergenic -93470 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 281-373 chr5 147814217 147814385 + 2 NA Intergenic Intergenic 24930 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 513-61 chr12 95384214 95384711 + 2 NA Intergenic LTR3B_|LTR|ERVK 74539 NR_037456 100500802 NR_037456 ENSG00000265917 MIR3685 - microRNA 3685 ncRNA 361-312 chr4 1121758 1122041 + 2 NA intron (NR_033768, intron 1 of 3) intron (NR_033768, intron 1 of 3) 1265 NR_033768 100379220 Hs.635208 NR_033768 ENSG00000215367 TMED11P p24a1|p24alpha1 transmembrane p24 trafficking protein 11, pseudogene pseudo 343-418 chr5 26494636 26494823 + 2 NA Intergenic HERV35I-int|LTR|ERV1 543857 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 203-200 chr6 52713145 52713307 + 2 NA Intergenic Intergenic 31933 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 213-240 chr5 148458152 148458318 + 2 NA intron (NM_001040169, intron 5 of 5) intron (NM_001040169, intron 5 of 5) 74277 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 262-229 chr2 156094563 156094740 + 2 NA intron (NR_110250, intron 1 of 3) LTR40a|LTR|ERVL 160280 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 302-53 chr10 77200323 77200528 + 2 NA intron (NM_001271519, intron 3 of 28) intron (NM_001271519, intron 3 of 28) 59594 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 548-96 chr17 69934616 69935017 + 2 NA Intergenic Intergenic -26891 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 536-105 chr19 36952690 36953143 + 2 NA TTS (NM_001204837) TTS (NM_001204837) 36584 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 298-370 chr5 89141933 89142136 + 2 NA intron (NR_136221, intron 4 of 6) intron (NR_136221, intron 4 of 6) -237929 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 448-255 chr7 41432053 41432339 + 2 NA Intergenic Intergenic -261723 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 185-130 chr22 46021341 46021503 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 14806 NR_027240 730668 Hs.640071 NR_027240 ENSG00000280424 LOC730668 - dynein heavy chain -like pseudogene pseudo 297-313 chr4 14124496 14124685 + 2 NA intron (NR_033931, intron 1 of 2) intron (NR_033931, intron 1 of 2) 12622 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 457-219 chr6 102439019 102439399 + 2 NA Intergenic Intergenic 1040224 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 230-379 chr8 110226322 110226447 + 2 NA Intergenic Intergenic -250613 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 251-297 chr5 37279084 37279280 + 2 NA Intergenic L1ME3B|LINE|L1 -29754 NM_023073 65250 Hs.586199 NM_023073 ENSG00000197603 CPLANE1 C5orf42|Hug|JBTS17|OFD6 ciliogenesis and planar polarity effector 1 protein-coding 285-305 chr4 60043384 60043588 + 2 NA Intergenic L1MEd|LINE|L1 -879133 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 428-113 chr2 1076833 1077175 + 2 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -125612 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 747-65 chr7 126242455 126242899 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 815507 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 366-149 chr16 22984423 22984765 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 164676 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 259-12 chr1 82851253 82851503 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -51805 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 442-275 chr7 68245986 68246396 + 2 NA Intergenic Intergenic 225938 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 447-203 chr4 178350422 178350742 + 2 NA Intergenic L1MEd|LINE|L1 -442646 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 197-228 chr9 81216888 81217050 + 2 NA Intergenic Intergenic 472566 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 374-162 chr19 28742005 28742237 + 2 NA Intergenic LOR1-int|LTR|ERV1 -14427 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 262-452 chr9 79646102 79646307 + 2 NA intron (NM_001351547, intron 5 of 18) intron (NM_001351547, intron 5 of 18) 73027 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 329-39 chr1 246441204 246441414 + 2 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) -23897 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 299-7 chr1 37174228 37174385 + 2 NA Intergenic Intergenic 12743 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 233-226 chr3 10787729 10787958 + 2 NA Intergenic L1ME1|LINE|L1 -23634 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 361-107 chr12 61359481 61359671 + 2 NA Intergenic Intergenic 833263 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 262-426 chr8 77635774 77636025 + 2 NA Intergenic Intergenic 185202 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 365-364 chr7 3021893 3022229 + 2 NA intron (NM_001324281, intron 1 of 25) L1MCa|LINE|L1 21806 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 608-164 chr9 12057111 12057678 + 2 NA Intergenic Intergenic -635991 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 724-4 chr1 94691640 94692205 + 2 NA intron (NR_160779, intron 2 of 5) LTR27|LTR|ERV1 53978 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 360-67 chr11 82629974 82630267 + 2 NA Intergenic Intergenic 103744 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 297-113 chr12 103291561 103291755 + 2 NA intron (NR_103526, intron 4 of 10) MER66D|LTR|ERV1 139816 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 136-11 chr10 80800632 80800736 + 2 NA Intergenic AluJr|SINE|Alu 150887 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 340-248 chr2 57436298 57436624 + 2 NA Intergenic Intergenic -471190 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 203-35 chr11 30482250 30482449 + 2 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 98144 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 513-38 chr10 128463868 128464290 + 2 NA Intergenic Intergenic 178129 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 472-93 chr14 86662460 86662810 + 2 NA Intergenic Intergenic -243143 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 230-58 chr11 36986920 36987082 + 2 NA Intergenic L1MA5|LINE|L1 -388722 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 400-294 chr5 138029439 138029758 + 2 NA intron (NM_001101801, intron 1 of 21) intron (NM_001101801, intron 1 of 21) -3176 NR_037900 100130172 Hs.616629 NR_037900 LOC100130172 - uncharacterized LOC100130172 ncRNA 346-113 chr12 127213806 127213997 + 2 NA Intergenic Intergenic 70382 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 131-17 chr12 25480461 25480551 + 2 NA intron (NM_152590, intron 8 of 8) intron (NM_152590, intron 8 of 8) 72777 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 217-196 chr2 205214624 205214810 + 2 NA intron (NM_205863, intron 15 of 21) intron (NM_205863, intron 15 of 21) -467783 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 732-87 chr7 71202939 71203428 + 2 NA intron (NM_022479, intron 1 of 10) L1MA7|LINE|L1 71039 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 368-66 chr10 111088801 111089108 + 2 NA Intergenic Intergenic 11925 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 495-24 chr10 26093681 26094143 + 2 NA intron (NM_017433, intron 15 of 34) L2|LINE|L2 -122395 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 495-4 chr1 65951450 65951905 + 2 NA intron (NM_002600, intron 3 of 16) intron (NM_002600, intron 3 of 16) 38432 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 338-50 chr10 20318126 20318328 + 2 NA Intergenic L2a|LINE|L2 -233743 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 354-327 chr4 60381884 60382063 + 2 NA Intergenic Intergenic -540646 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 248-121 chr14 86002303 86002484 + 2 NA intron (NR_110155, intron 1 of 3) L1ME3|LINE|L1 67715 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 278-226 chr2 116522124 116522314 + 2 NA Intergenic L1PREC2|LINE|L1 1178404 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 271-404 chr7 52596580 52596846 + 2 NA Intergenic LOR1-int|LTR|ERV1 -438920 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 411-58 chr11 82336024 82336305 + 2 NA intron (NR_120571, intron 3 of 7) L2a|LINE|L2 67749 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 349-56 chr10 43931294 43931602 + 2 NA intron (NR_033846, intron 2 of 7) L2a|LINE|L2 19046 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 287-100 chr11 119984430 119984636 + 2 NA Intergenic Intergenic 144320 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 399-249 chr5 61460409 61460709 + 2 NA intron (NM_020928, intron 1 of 13) intron (NM_020928, intron 1 of 13) 128301 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 313-455 chr5 169205528 169205713 + 2 NA intron (NM_003062, intron 3 of 35) intron (NM_003062, intron 3 of 35) 58074 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 248-36 chr10 50838718 50838896 + 2 NA intron (NM_001370131, intron 4 of 11) intron (NM_001370131, intron 4 of 11) 46820 NM_014576 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 215-226 chr4 81972963 81973132 + 2 NA Intergenic L3|LINE|CR1 400944 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 338-378 chr4 52318641 52318913 + 2 NA Intergenic Intergenic 267473 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 428-261 chr6 132572116 132572489 + 2 NA TTS (NM_175067) TTS (NM_175067) 1980 NM_175067 319100 Hs.434196 NM_175067 ENSG00000146383 TAAR6 TA4|TAR4|TAR6|TRAR4|taR-4|taR-6 trace amine associated receptor 6 protein-coding 133-85 chr9 103772920 103773013 + 2 NA Intergenic L1PB4|LINE|L1 -226743 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 321-72 chr10 90270967 90271202 + 2 NA Intergenic Intergenic 269721 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 193-217 chr9 90570512 90570657 + 2 NA intron (NR_034157, intron 1 of 5) L1ME3A|LINE|L1 12162 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 241-271 chr4 74641248 74641445 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 153177 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 404-311 chr8 71543275 71543663 + 2 NA intron (NM_001370336, intron 1 of 17) intron (NM_001370336, intron 1 of 17) 4235 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 378-345 chr5 107528801 107529110 + 2 NA intron (NM_001962, intron 1 of 4) MER112|DNA|hAT-Charlie 141982 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 306-220 chr2 10292886 10293067 + 2 NA Intergenic Intergenic -9928 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 582-83 chr2 236276722 236277121 + 2 NA Intergenic LTR78B|LTR|ERV1 -12576 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 253-151 chr16 56453339 56453494 + 2 NA intron (NM_001324363, intron 2 of 11) intron (NM_001324363, intron 2 of 11) 1332 NM_001324358 55239 Hs.231883 NM_018233 ENSG00000087263 OGFOD1 TPA1 2-oxoglutarate and iron dependent oxygenase domain containing 1 protein-coding 222-117 chr15 33709931 33710093 + 2 NA intron (NM_001243996, intron 43 of 102) intron (NM_001243996, intron 43 of 102) -258485 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 317-47 chr10 37903412 37903635 + 2 NA Intergenic Intergenic -45420 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 289-289 chr3 20414175 20414377 + 2 NA Intergenic Intergenic 71808 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 336-319 chr20 22521358 22521643 + 2 NA Intergenic AluSq2|SINE|Alu 57142 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 574-151 chr6 49462756 49463171 + 2 NA promoter-TSS (NM_018132) promoter-TSS (NM_018132) 290 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 303-47 chr10 77071654 77071833 + 2 NA intron (NM_001271519, intron 14 of 28) intron (NM_001271519, intron 14 of 28) -69088 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 411-235 chr5 107169946 107170247 + 2 NA Intergenic MER20|DNA|hAT-Charlie -159082 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 298-401 chr6 65239816 65239992 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -61514 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 320-112 chr12 17338979 17339142 + 2 NA Intergenic L1MB5|LINE|L1 250018 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 384-334 chr6 162935297 162935553 + 2 NA intron (NM_001080379, intron 2 of 4) L1MA4|LINE|L1 118736 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 556-51 chr12 54979938 54980395 + 2 NA intron (NM_001136030, intron 1 of 10) intron (NM_001136030, intron 1 of 10) 1765 NM_001098815 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 573-89 chr19 37148903 37149247 + 2 NA 3' UTR (NM_152655, exon 6 of 6) 3' UTR (NM_152655, exon 6 of 6) 23361 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 511-108 chr2 11361758 11362220 + 2 NA Intergenic AluSx1|SINE|Alu -16552 NM_001321643 9475 Hs.681743 NM_004850 ENSG00000134318 ROCK2 ROCK-II Rho associated coiled-coil containing protein kinase 2 protein-coding 471-70 chr12 99434767 99435123 + 2 NA intron (NM_152788, intron 11 of 25) intron (NM_152788, intron 11 of 25) -212808 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 405-257 chr5 122147040 122147388 + 2 NA intron (NM_207317, intron 1 of 1) intron (NM_207317, intron 1 of 1) -12962 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 398-263 chr5 21158405 21158696 + 2 NA Intergenic Intergenic -300930 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 368-170 chr16 9275185 9275399 + 2 NA Intergenic Intergenic -80296 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 303-192 chr2 3233251 3233421 + 2 NA intron (NM_001330531, intron 3 of 7) L1ME3G|LINE|L1 -107310 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 309-462 chr5 158575600 158575812 + 2 NA Intergenic L1M1|LINE|L1 -165933 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 307-454 chr7 61960374 61960557 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1343591 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 241-207 chr2 177113789 177113956 + 2 NA Intergenic L1ME3D|LINE|L1 98539 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 117-20 chr2 82752257 82752335 + 2 NA Intergenic Intergenic -104507 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 114-19 chr16 6634933 6635042 + 2 NA intron (NM_018723, intron 2 of 15) (AT)n|Simple_repeat|Simple_repeat -138822 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 286-113 chr14 42155934 42156124 + 2 NA Intergenic Intergenic 549173 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 631-42 chr15 25496797 25497198 + 2 NA Intergenic L1MC1|LINE|L1 -57941 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 558-203 chr7 104320417 104320811 + 2 NA Intergenic Intergenic -8042 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 741-13 chr11 97075739 97076299 + 2 NA Intergenic (TTAA)n|Simple_repeat|Simple_repeat 567594 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 169-52 chr18 3618062 3618205 + 2 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 14396 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 520-42 chr10 117212204 117212578 + 2 NA Intergenic L1M1|LINE|L1 14902 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 473-124 chr2 9231201 9231666 + 2 NA intron (NM_003887, intron 1 of 27) MIRb|SINE|MIR 24621 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 197-6 chr1 55859502 55859695 + 2 NA Intergenic Intergenic 85365 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 289-91 chr12 4784484 4784762 + 2 NA Intergenic Intergenic -24553 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 184-149 chr7 1342950 1343089 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 110147 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 266-10 chr1 72969940 72970113 + 2 NA Intergenic Intergenic -336144 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 347-351 chr4 81704216 81704499 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -232450 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 125-46 chr4 73870815 73870935 + 2 NA non-coding (NR_046035, exon 4 of 4) non-coding (NR_046035, exon 4 of 4) 1482 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 525-45 chr11 103520885 103521235 + 2 NA Intergenic L1ME3G|LINE|L1 -328846 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 185-196 chr8 51736152 51736278 + 2 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 73230 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 324-569 chr9 84590220 84590505 + 2 NA Intergenic Intergenic -78096 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 354-237 chr2 169042970 169043172 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -11747 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 695-4 chr1 78600210 78600881 + 2 NA Intergenic Intergenic -19903 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 252-260 chr3 50583766 50583962 + 2 NA 3' UTR (NM_016173, exon 11 of 11) 3' UTR (NM_016173, exon 11 of 11) -12837 NM_001171741 51161 Hs.517860 NM_016210 ENSG00000088543 C3orf18 G20 chromosome 3 open reading frame 18 protein-coding 553-163 chr3 192686302 192686705 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 41038 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 290-183 chr18 52246197 52246464 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -93867 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 382-361 chr6 106595433 106595635 + 2 NA intron (NM_032730, intron 5 of 8) AluSx1|SINE|Alu 33964 NM_032730 84816 Hs.155839 NM_032730 ENSG00000130347 RTN4IP1 NIMP|OPA10 reticulon 4 interacting protein 1 protein-coding 242-52 chr11 25100777 25100997 + 2 NA Intergenic Intergenic 603834 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 372-468 chr8 7049538 7049899 + 2 NA Intergenic L1M1|LINE|L1 7021 NM_021010 1670 Hs.655233 NM_021010 ENSG00000164816 DEFA5 DEF5|HD-5 defensin alpha 5 protein-coding 349-101 chr11 80301861 80302132 + 2 NA Intergenic Intergenic 460807 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 205-267 chr8 30432060 30432246 + 2 NA intron (NM_001008710, intron 1 of 8) intron (NM_001008710, intron 1 of 8) -46752 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 375-435 chr9 1896277 1896591 + 2 NA Intergenic Intergenic -118913 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 394-172 chr2 70873863 70874091 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 -13894 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 352-469 chr6 138718322 138718570 + 2 NA Intergenic Intergenic 26778 NR_033896 441172 Hs.92290 NR_033896 FLJ46906 - uncharacterized LOC441172 ncRNA 567-13 chr1 177658627 177659005 + 2 NA Intergenic MIR|SINE|MIR -41708 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 199-106 chr2 43799959 43800144 + 2 NA intron (NM_016008, intron 8 of 12) MARNA|DNA|TcMar-Mariner 26012 NM_016008 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 227-325 chr6 139733598 139733755 + 2 NA Intergenic L2a|LINE|L2 -37397 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 443-76 chr12 129640682 129641065 + 2 NA intron (NM_133448, intron 2 of 8) MER1A|DNA|hAT-Charlie 263152 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 532-282 chr9 8145689 8146200 + 2 NA Intergenic Intergenic -346166 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 342-570 chrX 63832779 63832979 + 2 NA Intergenic Intergenic -46792 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 165-73 chr22 34591601 34591749 + 2 NA Intergenic Intergenic 406241 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 560-137 chr5 40268898 40269409 + 2 NA Intergenic MIRb|SINE|MIR 216862 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 368-268 chr20 55654340 55654590 + 2 NA Intergenic Intergenic -227268 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 276-133 chr13 93123553 93123766 + 2 NA Intergenic AluSg|SINE|Alu 78318 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 459-159 chr20 19067406 19067702 + 2 NA Intergenic Intergenic -145088 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 156-5 chr1 170439620 170439735 + 2 NA Intergenic L1ME1|LINE|L1 -92445 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 280-109 chr13 58854071 58854322 + 2 NA Intergenic MIR|SINE|MIR -621079 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 441-222 chr6 64764318 64764539 + 2 NA intron (NM_001292009, intron 22 of 43) THE1D-int|LTR|ERVL-MaLR -536990 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 378-335 chr5 27542092 27542445 + 2 NA Intergenic Intergenic 69976 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 356-193 chr17 57693486 57693698 + 2 NA Intergenic L1ME1|LINE|L1 51707 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 302-124 chr14 50022118 50022278 + 2 NA intron (NR_131171, intron 6 of 8) MLT1H|LTR|ERVL-MaLR -14678 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 382-77 chr12 55276872 55277193 + 2 NA Intergenic Intergenic 18200 NM_001005493 283365 Hs.554555 NM_001005493 ENSG00000188324 OR6C6 - olfactory receptor family 6 subfamily C member 6 protein-coding 280-20 chr1 108786478 108786623 + 2 NA intron (NM_007269, intron 11 of 18) L1ME3|LINE|L1 39876 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 327-77 chr11 26367774 26367939 + 2 NA intron (NM_031418, intron 1 of 26) MSTA|LTR|ERVL-MaLR 35726 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 315-83 chr11 39499334 39499516 + 2 NA Intergenic AluJb|SINE|Alu 793705 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 430-281 chr7 43693391 43693746 + 2 NA intron (NR_163914, intron 1 of 8) L2a|LINE|L2 35955 NR_135583 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 248-311 chr5 57608674 57608893 + 2 NA intron (NR_120607, intron 4 of 5) L1MCa|LINE|L1 38441 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 583-43 chr12 41539006 41539573 + 2 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 101550 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 336-133 chr12 58579813 58580095 + 2 NA intron (NR_120452, intron 3 of 7) intron (NR_120452, intron 3 of 7) -11748 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 160-68 chr3 84107082 84107213 + 2 NA Intergenic AluJb|SINE|Alu 762428 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 353-549 chr9 15900732 15901012 + 2 NA intron (NM_001355547, intron 23 of 24) intron (NM_001355547, intron 23 of 24) 336894 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 240-35 chr10 21850873 21851108 + 2 NA intron (NM_022365, intron 8 of 11) L1MB5|LINE|L1 152740 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 131-21 chr13 75566567 75566686 + 2 NA intron (NM_006002, intron 3 of 8) intron (NM_006002, intron 3 of 8) 16876 NM_006002 7347 Hs.162241 NM_006002 ENSG00000118939 UCHL3 UCH-L3 ubiquitin C-terminal hydrolase L3 protein-coding 224-143 chr2 66816851 66817032 + 2 NA Intergenic L1MA1|LINE|L1 -87495 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 211-127 chr19 51377430 51377634 + 2 NA Intergenic Intergenic -4878 NM_005601 4818 Hs.10306 NM_005601 ENSG00000105374 NKG7 GIG1|GMP-17|p15-TIA-1 natural killer cell granule protein 7 protein-coding 248-15 chr1 164341032 164341268 + 2 NA Intergenic Intergenic -218210 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 267-155 chr18 30794352 30794551 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 248291 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 293-258 chr3 54736777 54737027 + 2 NA intron (NM_018398, intron 11 of 37) MIR|SINE|MIR -97045 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 339-328 chr21 20528564 20528786 + 2 NA Intergenic Intergenic -269990 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 210-67 chr13 103852284 103852468 + 2 NA Intergenic Intergenic 427176 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 260-428 chr8 53362846 53363037 + 2 NA Intergenic MIRc|SINE|MIR -111244 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 149-28 chr14 35962386 35962502 + 2 NA Intergenic Intergenic -107983 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 404-58 chr11 9939277 9939613 + 2 NA intron (NM_030962, intron 16 of 39) intron (NM_030962, intron 16 of 39) 100303 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 245-352 chr8 110245365 110245589 + 2 NA Intergenic L1PA16|LINE|L1 -269706 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 558-8 chr1 83121110 83121415 + 2 NA intron (NR_147074, intron 9 of 10) intron (NR_147074, intron 9 of 10) -135054 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 184-146 chr6 150944535 150944627 + 2 NA exon (NM_001242767, exon 14 of 28) exon (NM_001242767, exon 14 of 28) -62427 NM_001350490 25902 Hs.591343 NM_015440 ENSG00000120254 MTHFD1L FTHFSDC1|MTC1THFS|dJ292B18.2 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like protein-coding 599-2 chr1 44704232 44704707 + 2 NA intron (NM_001145636, intron 6 of 11) intron (NM_001145636, intron 6 of 11) 17432 NR_002753 26828 NR_002753 ENSG00000199377 RNU5F-1 RNU5F|U5F RNA, U5F small nuclear 1 snRNA 384-58 chr11 58491725 58491937 + 2 NA Intergenic Intergenic 16274 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 297-100 chr12 21978554 21978808 + 2 NA Intergenic Intergenic -41987 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 511-146 chr20 24074219 24074555 + 2 NA Intergenic Intergenic -85608 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 343-170 chr15 100392375 100392550 + 2 NA intron (NR_120374, intron 1 of 4) L1ME4b|LINE|L1 19523 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 224-45 chr11 18149292 18149487 + 2 NA Intergenic Intergenic 16818 NM_001370464 117195 Hs.380177 NM_054031 ENSG00000179826 MRGPRX3 GPCR|MRGX3|SNSR1|SNSR2 MAS related GPR family member X3 protein-coding 260-301 chr4 32728714 32728952 + 2 NA Intergenic Intergenic 377795 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 337-438 chr5 29359473 29359658 + 2 NA Intergenic Intergenic 36411 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 624-131 chr9 103371702 103372185 + 2 NA Intergenic MIRb|SINE|MIR -46910 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 499-71 chr14 86178504 86178916 + 2 NA Intergenic Intergenic 244032 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 339-433 chr4 179005032 179005247 + 2 NA Intergenic Intergenic -1097203 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 664-42 chr15 65114372 65114970 + 2 NA Intergenic L2b|LINE|L2 -8312 NM_001163692 390595 Hs.659256 NM_001163692 ENSG00000246922 UBAP1L UBAP-1L ubiquitin associated protein 1 like protein-coding 258-135 chr14 87249158 87249353 + 2 NA Intergenic L1ME2|LINE|L1 343477 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 356-307 chr22 48306749 48307026 + 2 NA Intergenic Intergenic 32523 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 229-264 chr3 161906105 161906283 + 2 NA Intergenic AluSx3|SINE|Alu 409386 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 298-308 chr3 158239750 158239972 + 2 NA intron (NM_001271838, intron 4 of 9) intron (NM_001271838, intron 4 of 9) 129772 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 989-22 chr5 179784571 179785194 + 2 NA Intergenic Intergenic -9104 NM_145867 4056 Hs.706741 NM_145867 ENSG00000213316 LTC4S - leukotriene C4 synthase protein-coding 259-196 chr2 71912230 71912471 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 235512 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 390-210 chr20 24586918 24587285 + 2 NA intron (NM_024893, intron 3 of 3) intron (NM_024893, intron 3 of 3) 117140 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 331-227 chr18 73930706 73930999 + 2 NA Intergenic Intergenic 216982 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 585-11 chr1 246992225 246992716 + 2 NA intron (NR_037892, intron 3 of 5) L1MA2|LINE|L1 15587 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 335-79 chr10 130289603 130289874 + 2 NA Intergenic Intergenic 153329 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 276-457 chr8 106430361 106430589 + 2 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -17449 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 345-514 chr8 40948558 40948789 + 2 NA Intergenic L1MB3|LINE|L1 -50847 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 573-72 chr16 63325721 63326213 + 2 NA Intergenic L1MC5a|LINE|L1 -1289529 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 218-311 chr7 112070543 112070741 + 2 NA intron (NM_001363540, intron 1 of 52) L2c|LINE|L2 135757 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 251-334 chr6 61895378 61895565 + 2 NA intron (NR_146874, intron 5 of 13) intron (NR_146874, intron 5 of 13) 321341 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 310-104 chr12 46617388 46617608 + 2 NA intron (NR_125377, intron 3 of 3) L1PA3|LINE|L1 208499 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 297-489 chr8 113339828 113340033 + 2 NA intron (NM_001363185, intron 1 of 66) L1MEg|LINE|L1 37222 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 333-53 chr10 41792765 41793008 + 2 NA Intergenic ALR/Alpha|Satellite|centr 575159 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 594-113 chr5 44985068 44985501 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 176337 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 177-3 chr1 76910074 76910172 + 2 NA intron (NM_001320274, intron 2 of 2) intron (NM_001320274, intron 2 of 2) 42643 NM_030965 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 301-376 chr5 134070358 134070573 + 2 NA Intergenic Intergenic -44216 NM_001346425 6932 Hs.573153 NM_003202 ENSG00000081059 TCF7 TCF-1 transcription factor 7 protein-coding 221-217 chr4 64467207 64467390 + 2 NA Intergenic Intergenic -57838 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 658-118 chr8 33650929 33651428 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -51072 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 352-161 chr15 49501228 49501432 + 2 NA intron (NM_001330293, intron 10 of 10) MSTB-int|LTR|ERVL-MaLR 78088 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 413-186 chr3 58985769 58986152 + 2 NA intron (NR_110820, intron 2 of 2) intron (NR_110820, intron 2 of 2) 64065 NM_198463 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 441-79 chr14 75820827 75821211 + 2 NA intron (NM_015072, intron 28 of 31) intron (NM_015072, intron 28 of 31) 159773 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 390-196 chr2 133765902 133766221 + 2 NA Intergenic Intergenic -197598 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 451-16 chr1 189579574 189580019 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 896214 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 170-94 chr3 70145874 70146024 + 2 NA Intergenic L1MD|LINE|L1 146205 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 332-358 chr3 191640183 191640358 + 2 NA Intergenic Intergenic 179107 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 506-43 chr10 91444519 91444928 + 2 NA intron (NM_182765, intron 2 of 20) intron (NM_182765, intron 2 of 20) 34438 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 297-436 chr7 49749725 49749926 + 2 NA Intergenic Intergenic -23813 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 331-200 chr17 4027836 4028078 + 2 NA intron (NM_015113, intron 42 of 54) L1MEc|LINE|L1 50854 NR_146884 105371496 Hs.579239 NR_146884 LINC01975 - long intergenic non-protein coding RNA 1975 ncRNA 351-413 chr6 40290937 40291169 + 2 NA Intergenic MIR|SINE|MIR 64953 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 534-3 chr1 49281254 49281719 + 2 NA intron (NR_136623, intron 2 of 12) LTR52|LTR|ERVL 24075 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 476-13 chr1 192092259 192092540 + 2 NA Intergenic L2c|LINE|L2 -66063 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 719-2 chr1 55976591 55977131 + 2 NA Intergenic L1ME3A|LINE|L1 31774 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 242-401 chr8 110472996 110473154 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -497304 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 390-63 chr11 88158629 88158959 + 2 NA intron (NM_022337, intron 1 of 2) L1PA16|LINE|L1 16649 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 379-290 chr6 55183101 55183469 + 2 NA intron (NM_001526, intron 2 of 7) L2c|LINE|L2 76825 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 381-117 chr15 100018310 100018681 + 2 NA intron (NM_139057, intron 18 of 21) MSTA|LTR|ERVL-MaLR 211472 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 366-252 chr20 53522326 53522585 + 2 NA Intergenic AluSz6|SINE|Alu -30315 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 217-248 chr3 194914908 194915096 + 2 NA Intergenic L1MEf|LINE|L1 -146293 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 255-152 chr16 82567787 82567957 + 2 NA Intergenic Intergenic -59097 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 393-127 chr17 59091695 59091963 + 2 NA intron (NM_001320987, intron 1 of 22) intron (NM_001320987, intron 1 of 22) 15051 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 504-192 chr4 90752314 90752719 + 2 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 517485 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 495-81 chr17 17449675 17450010 + 2 NA Intergenic L1ME3A|LINE|L1 -27158 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 280-262 chr3 99397535 99397777 + 2 NA Intergenic Intergenic -240938 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 456-184 chr21 20016429 20016826 + 2 NA Intergenic Intergenic -116872 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 290-217 chr2 123436590 123436855 + 2 NA Intergenic Intergenic -363241 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 387-187 chr2 146452781 146453116 + 2 NA Intergenic Intergenic -134109 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 503-61 chr11 103356854 103357220 + 2 NA intron (NM_001377, intron 82 of 88) intron (NM_001377, intron 82 of 88) 247611 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 387-314 chr6 86886635 86886990 + 2 NA Intergenic Intergenic -50716 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 319-236 chr2 51678521 51678683 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 646001 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 371-86 chr12 85281520 85281825 + 2 NA intron (NM_006982, intron 1 of 3) intron (NM_006982, intron 1 of 3) 1452 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 359-512 chr9 94195788 94196128 + 2 NA intron (NR_160773, intron 2 of 2) L1PB3|LINE|L1 8608 NR_046165 158257 Hs.652626 NR_046163 ENSG00000230262 LINC02603 MIRLET7DHG long intergenic non-protein coding RNA 2603 ncRNA 356-447 chr7 34690771 34691079 + 2 NA intron (NM_001300934, intron 2 of 6) L1PB4|LINE|L1 32686 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 339-406 chr4 63332458 63332627 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1076908 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 308-77 chr10 130524170 130524449 + 2 NA Intergenic L1M5|LINE|L1 387900 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 613-41 chr17 35417961 35418384 + 2 NA intron (NM_018042, intron 3 of 3) L1MEg|LINE|L1 14328 NM_018042 55106 Hs.663548 NM_018042 ENSG00000172123 SLFN12 SLFN3 schlafen family member 12 protein-coding 360-469 chr8 104979123 104979474 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -339140 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 652-88 chr4 113657833 113658362 + 2 NA intron (NM_001221, intron 3 of 18) intron (NM_001221, intron 3 of 18) 103641 NM_001321572 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 226-32 chr10 10600450 10600619 + 2 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 137984 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 363-388 chr6 61987292 61987644 + 2 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 298757 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 318-245 chr2 18047406 18047595 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 168833 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 699-64 chr20 61539858 61540363 + 2 NA intron (NM_001252338, intron 1 of 14) intron (NM_001252338, intron 1 of 14) 40689 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 301-224 chr2 142225007 142225180 + 2 NA Intergenic Intergenic -93392 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 232-197 chr2 183010522 183010665 + 2 NA intron (NM_013436, intron 2 of 30) intron (NM_013436, intron 2 of 30) 27864 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 381-248 chr3 60889350 60889638 + 2 NA intron (NR_148922, intron 3 of 3) MIRb|SINE|MIR -271624 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 257-368 chr6 147027691 147027908 + 2 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -131126 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 317-327 chr3 190212439 190212663 + 2 NA Intergenic L1MA2|LINE|L1 -90114 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 344-179 chr16 81551339 81551546 + 2 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) 17540 NR_107008 102465840 NR_107008 ENSG00000277255 MIR7854 hsa-mir-7854 microRNA 7854 ncRNA 517-28 chr10 22496032 22496524 + 2 NA Intergenic AluJr|SINE|Alu -58349 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 470-5 chr1 73226511 73226833 + 2 NA Intergenic L1MA4|LINE|L1 -79498 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 314-209 chr16 60120283 60120555 + 2 NA Intergenic Intergenic 239374 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 313-113 chr12 88427636 88427927 + 2 NA Intergenic L1MEc|LINE|L1 152690 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 398-246 chr4 113419752 113419994 + 2 NA Intergenic 7SLRNA|srpRNA|srpRNA 127034 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 268-98 chr12 112775792 112775931 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) -15677 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 368-383 chr5 174538570 174538783 + 2 NA Intergenic L1MB2|LINE|L1 -185906 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 408-235 chr4 62401839 62402242 + 2 NA Intergenic MIRb|SINE|MIR -240275 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 369-63 chr11 82285465 82285677 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 118342 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 334-145 chr14 55449514 55449788 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -9106 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 558-212 chr8 68916544 68917076 + 2 NA intron (NR_039986, intron 4 of 4) intron (NR_039986, intron 4 of 4) 187380 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 331-317 chr20 45257890 45258183 + 2 NA Intergenic MIRb|SINE|MIR -3472 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 340-582 chrX 62701979 62702255 + 2 NA Intergenic ALR/Alpha|Satellite|centr 649215 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 345-456 chr6 33819226 33819433 + 2 NA Intergenic Intergenic -15326 NM_001040109 4295 Hs.2813 NM_002418 ENSG00000096395 MLN - motilin protein-coding 371-199 chr2 184892806 184893119 + 2 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 274110 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 313-50 chr10 67467181 67467485 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -63923 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 167-117 chr9 135999629 135999759 + 2 NA Intergenic Intergenic -38321 NM_016172 10422 Hs.9194 NM_016172 ENSG00000130560 UBAC1 GBDR1|KPC2|UBADC1 UBA domain containing 1 protein-coding 383-424 chrX 109973486 109973724 + 2 NA Intergenic L1MDa|LINE|L1 -29030 NM_001353851 84187 Hs.496572 NM_017698 ENSG00000157600 TMEM164 bB360B22.3 transmembrane protein 164 protein-coding 459-278 chr7 54459225 54459592 + 2 NA Intergenic Intergenic -82917 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 201-172 chr4 42232075 42232250 + 2 NA Intergenic Intergenic -79507 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 481-267 chr6 121123714 121124098 + 2 NA intron (NR_104452, intron 30 of 35) L1M1|LINE|L1 210574 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 656-136 chr8 142630914 142631435 + 2 NA Intergenic Intergenic -7422 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 515-171 chr3 176119006 176119291 + 2 NA Intergenic L2|LINE|L2 -125403 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 192-156 chr5 8073584 8073745 + 2 NA Intergenic Intergenic 204516 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 219-326 chr7 8238581 8238762 + 2 NA intron (NM_001350826, intron 1 of 14) intron (NM_001350826, intron 1 of 14) 23381 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 170-86 chr21 31742679 31742778 + 2 NA Intergenic L1MEc|LINE|L1 -10610 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 364-440 chr8 78918427 78918685 + 2 NA Intergenic L1MA2|LINE|L1 81027 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 362-177 chr16 12140472 12140676 + 2 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 163840 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 474-127 chr2 16724891 16725272 + 2 NA Intergenic Intergenic -59247 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 378-366 chr6 44521517 44521746 + 2 NA Intergenic L1MA4A|LINE|L1 30250 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 337-357 chr3 90328813 90329020 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1221295 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 233-111 chr15 76090725 76090935 + 2 NA intron (NM_152335, intron 1 of 10) L1MA5|LINE|L1 30845 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 240-222 chr2 105480527 105480696 + 2 NA Intergenic L1ME3E|LINE|L1 -42098 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 282-8 chr1 90136667 90136868 + 2 NA Intergenic L1MB3|LINE|L1 141657 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 223-281 chr5 85402403 85402558 + 2 NA Intergenic L1MC2|LINE|L1 -879964 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 282-461 chr8 111866006 111866204 + 2 NA Intergenic Intergenic 489466 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 260-269 chr3 70820517 70820675 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 244328 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 426-160 chr20 17259644 17259984 + 2 NA intron (NM_001201529, intron 1 of 10) intron (NM_001201529, intron 1 of 10) 32774 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 428-329 chrX 57938965 57939242 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -28470 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 559-46 chr14 55983128 55983652 + 2 NA Intergenic Intergenic -135021 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 325-168 chr14 57728602 57728824 + 2 NA intron (NR_159373, intron 1 of 10) AluSz|SINE|Alu 136286 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 436-255 chr5 147307782 147308185 + 2 NA intron (NM_001112724, intron 4 of 12) L1ME3B|LINE|L1 72957 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 185-206 chr8 132940012 132940139 + 2 NA intron (NM_003235, intron 25 of 47) MIRb|SINE|MIR 73117 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 471-86 chr14 78083814 78084113 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -86410 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 193-170 chr6 41382002 41382170 + 2 NA Intergenic Intergenic 46478 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 298-245 chr2 207578165 207578382 + 2 NA intron (NR_163947, intron 7 of 8) L1M4|LINE|L1 19151 NM_001371428 643-100 chr5 130457872 130458236 + 2 NA Intergenic L2c|LINE|L2 553589 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 204-271 chr7 45556730 45556901 + 2 NA Intergenic L1MEd|LINE|L1 -17325 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 389-290 chr5 80118908 80119204 + 2 NA intron (NR_126061, intron 11 of 13) MIR|SINE|MIR -35391 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 596-80 chr17 71539637 71540081 + 2 NA Intergenic MER57B1|LTR|ERV1 -337680 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 376-250 chr3 79629616 79629821 + 2 NA intron (NM_002941, intron 1 of 30) L1PB4|LINE|L1 121831 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 615-108 chr5 39111621 39112054 + 2 NA intron (NM_001243093, intron 16 of 18) intron (NM_001243093, intron 16 of 18) -37438 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 335-71 chr10 105297491 105297775 + 2 NA Intergenic L1M2|LINE|L1 522700 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 249-180 chr2 4783005 4783193 + 2 NA Intergenic Intergenic -126877 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 324-426 chr5 52594123 52594294 + 2 NA Intergenic Intergenic -193708 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 195-220 chr6 167086926 167087035 + 2 NA Intergenic L1MEf|LINE|L1 -24827 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 284-308 chr5 8262658 8262836 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 194817 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 299-414 chr7 41462210 41462370 + 2 NA Intergenic Intergenic -231629 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 272-132 chr15 57912818 57913045 + 2 NA Intergenic MIR3|SINE|MIR 101092 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 278-329 chr5 25135954 25136221 + 2 NA intron (NR_147006, intron 4 of 4) AluSq2|SINE|Alu 54569 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 495-248 chr8 66293094 66293505 + 2 NA Intergenic L1MD1|LINE|L1 101185 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 350-240 chr2 121860931 121861125 + 2 NA Intergenic Intergenic 105377 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 361-185 chr18 42825684 42825927 + 2 NA intron (NM_002930, intron 4 of 4) LTR37A|LTR|ERV1 289880 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 332-432 chr5 141310102 141310335 + 2 NA Intergenic Intergenic -6169 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 324-134 chr13 22281112 22281303 + 2 NA Intergenic L1MDb|LINE|L1 70922 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 250-345 chr5 68081444 68081620 + 2 NA Intergenic AluJr|SINE|Alu -108344 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 293-35 chr10 56474894 56475096 + 2 NA Intergenic Intergenic -113722 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 433-171 chr3 68537514 68537886 + 2 NA intron (NM_001252216, intron 3 of 4) LTR49|LTR|ERV1 37063 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 328-294 chr2 195649254 195649570 + 2 NA Intergenic Intergenic -7546 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 263-434 chr8 134218682 134218839 + 2 NA Intergenic L1PB3|LINE|L1 332264 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 238-353 chr7 28342383 28342527 + 2 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 43134 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 292-214 chr2 56921902 56922170 + 2 NA Intergenic Intergenic -736266 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 246-245 chr22 34153078 34153290 + 2 NA Intergenic Intergenic -230296 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 245-281 chr5 57562027 57562257 + 2 NA Intergenic L2a|LINE|L2 -8200 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 498-276 chr8 104656894 104657359 + 2 NA Intergenic Intergenic -68102 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 250-260 chr22 26151291 26151492 + 2 NA Intergenic L1M5|LINE|L1 -18071 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 595-142 chr6 56221411 56221861 + 2 NA intron (NM_001318752, intron 1 of 28) AluJr|SINE|Alu 25944 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 208-85 chr16 58278026 58278181 + 2 NA intron (NM_014157, intron 7 of 8) L1MB3|LINE|L1 16922 NM_001305173 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 487-188 chr3 74901137 74901443 + 2 NA Intergenic Intergenic -313186 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 319-565 chr9 6607421 6607589 + 2 NA intron (NM_000170, intron 4 of 24) AluSx|SINE|Alu 38187 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 387-381 chr8 139598098 139598385 + 2 NA Intergenic L2a|LINE|L2 104882 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 587-33 chr12 226255 226746 + 2 NA exon (NM_016615, exon 9 of 15) exon (NM_016615, exon 9 of 15) -12343 NM_001122848 6539 Hs.437174 NM_003044 ENSG00000111181 SLC6A12 BGT-1|BGT1|GAT2 solute carrier family 6 member 12 protein-coding 336-398 chr4 38256007 38256225 + 2 NA Intergenic AluJr4|SINE|Alu -110798 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 303-457 chr8 88884828 88885002 + 2 NA Intergenic Intergenic -557432 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 320-196 chr16 81264940 81265135 + 2 NA intron (NM_017429, intron 5 of 10) intron (NM_017429, intron 5 of 10) 26348 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 261-227 chr22 26072693 26072927 + 2 NA Intergenic MIR3|SINE|MIR -96652 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 370-75 chr10 133051953 133052146 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 34648 NR_111905 100128127 Hs.694139 NR_111905 ADGRA1-AS1 GPR123-AS1 adhesion G protein-coupled receptor A1 antisense RNA 1 ncRNA 487-199 chr3 188992455 188992837 + 2 NA Intergenic Intergenic -45007 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 410-61 chr11 120203546 120203794 + 2 NA Intergenic Intergenic -7362 NM_178507 220323 Hs.445081 NM_178507 ENSG00000184232 OAF NS5ATP13TP2 out at first homolog protein-coding 520-280 chr7 53585448 53585798 + 2 NA Intergenic Intergenic 226308 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 399-101 chr15 86591958 86592194 + 2 NA intron (NM_152336, intron 22 of 24) L1MC4|LINE|L1 -275108 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 184-179 chr9 30827983 30828117 + 2 NA Intergenic L1M5|LINE|L1 -419596 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 271-89 chr12 23636350 23636501 + 2 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -51839 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 340-140 chr14 20746410 20746584 + 2 NA intron (NM_006683, intron 1 of 1) intron (NM_006683, intron 1 of 1) 610 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 264-55 chr10 81624165 81624363 + 2 NA Intergenic L1PB4|LINE|L1 -250930 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 348-8 chr1 69520187 69520483 + 2 NA Intergenic HAL1|LINE|L1 -46999 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 751-82 chr9 82574939 82575461 + 2 NA Intergenic L1MB4|LINE|L1 487942 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 153-61 chr20 44048423 44048541 + 2 NA intron (NM_001098797, intron 3 of 8) L1M5|LINE|L1 102586 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 462-188 chr3 169076951 169077293 + 2 NA Intergenic L2b|LINE|L2 68401 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 189-97 chr2 147999820 147999984 + 2 NA intron (NM_001190879, intron 1 of 14) HAL1|LINE|L1 20835 NM_001190882 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 449-223 chr5 145683374 145683779 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 151766 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 229-286 chr4 155183752 155183893 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -24814 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 271-397 chr7 10679593 10679762 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -22999 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 555-113 chr20 46877007 46877443 + 2 NA Intergenic Intergenic -17399 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 412-36 chr10 81648843 81649224 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -226161 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 428-230 chr5 46199378 46199601 + 2 NA Intergenic ALR/Alpha|Satellite|centr -503109 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 147-56 chr3 45837783 45837866 + 2 NA intron (NM_001276379, intron 3 of 9) intron (NM_001276379, intron 3 of 9) 4295 NM_020347 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 182-84 chr2 63831454 63831586 + 2 NA Intergenic Intergenic -9444 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 429-99 chr15 55339868 55340198 + 2 NA intron (NM_004855, intron 7 of 11) intron (NM_004855, intron 7 of 11) 20811 NM_004855 9488 Hs.612814 NM_004855 ENSG00000069943 PIGB GPI-MT-III|PIG-B phosphatidylinositol glycan anchor biosynthesis class B protein-coding 290-359 chr5 111700739 111700963 + 2 NA intron (NR_040093, intron 2 of 6) intron (NR_040093, intron 2 of 6) 55400 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 264-252 chr21 23825538 23825786 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -440827 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 391-288 chr5 96138088 96138413 + 2 NA intron (NR_130776, intron 1 of 4) L1MC3|LINE|L1 59112 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 316-435 chr5 43636593 43636769 + 2 NA intron (NM_012343, intron 7 of 21) intron (NM_012343, intron 7 of 21) -33451 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 352-434 chr5 144312925 144313188 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 107665 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 285-369 chr6 103043494 103043645 + 2 NA Intergenic MIRb|SINE|MIR 1644584 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 224-206 chr3 101759866 101759992 + 2 NA intron (NM_024548, intron 9 of 10) L2|LINE|L2 -19282 NM_001348997 91775 Hs.595933 NM_145037 ENSG00000144815 NXPE3 FAM55C|MST115|MSTP115 neurexophilin and PC-esterase domain family member 3 protein-coding 286-341 chr5 16288967 16289223 + 2 NA Intergenic Intergenic 108854 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 310-107 chr12 93628659 93628962 + 2 NA Intergenic L1MB7|LINE|L1 -48561 NR_135147 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 520-284 chr7 81129209 81129722 + 2 NA Intergenic L1PB4|LINE|L1 -207076 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 261-220 chr21 17098361 17098530 + 2 NA Intergenic L1MA4A|LINE|L1 -340445 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 222-111 chr14 56304179 56304342 + 2 NA Intergenic Intergenic 185849 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 408-55 chr11 13579089 13579342 + 2 NA Intergenic L1M1|LINE|L1 -83040 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 529-182 chr5 121655373 121655841 + 2 NA Intergenic Intergenic -196275 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 353-447 chr6 54756281 54756571 + 2 NA Intergenic L1PA13|LINE|L1 -90345 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 430-57 chr11 133373612 133373975 + 2 NA intron (NM_001012393, intron 1 of 7) L1ME3G|LINE|L1 158708 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 644-60 chr3 67803636 67803968 + 2 NA intron (NR_109992, intron 3 of 6) L1PB4|LINE|L1 149105 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 320-545 chr8 77524785 77525098 + 2 NA Intergenic L2a|LINE|L2 74244 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 654-115 chr7 50772509 50773057 + 2 NA intron (NM_001001555, intron 1 of 16) L1M4|LINE|L1 10113 NM_001350814 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 356-141 chr14 44456386 44456679 + 2 NA Intergenic L1M2|LINE|L1 50751 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 268-319 chr5 104536760 104536918 + 2 NA Intergenic Intergenic -562635 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 192-207 chr8 103632407 103632558 + 2 NA intron (NM_001348497, intron 1 of 22) AluSx1|SINE|Alu -130572 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 336-450 chr5 55036508 55036734 + 2 NA Intergenic Intergenic 12365 NM_002104 3003 Hs.277937 NM_002104 ENSG00000113088 GZMK TRYP2 granzyme K protein-coding 252-149 chr16 79969375 79969620 + 2 NA Intergenic Intergenic 174248 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 371-351 chr6 162934562 162934777 + 2 NA intron (NM_001080379, intron 2 of 4) L1MA4|LINE|L1 119492 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 640-15 chr10 81140919 81141550 + 2 NA Intergenic L1P3|LINE|L1 491437 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 308-191 chr17 74021077 74021321 + 2 NA Intergenic AluSx|SINE|Alu -182479 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 396-217 chr3 55386756 55387077 + 2 NA Intergenic L1ME2|LINE|L1 94482 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 525-9 chr1 96137589 96137957 + 2 NA Intergenic HAL1|LINE|L1 145705 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 263-49 chr10 57006552 57006737 + 2 NA Intergenic Intergenic 297915 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 185-137 chr3 73058195 73058357 + 2 NA intron (NM_001318026, intron 3 of 8) intron (NM_001318026, intron 3 of 8) -3383 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 227-259 chr4 90080801 90081026 + 2 NA Intergenic Intergenic -46620 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 325-343 chr3 39871605 39871853 + 2 NA intron (NM_001284424, intron 1 of 15) intron (NM_001284424, intron 1 of 15) 62069 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 616-123 chr4 99194234 99194791 + 2 NA intron (NR_037884, intron 3 of 9) AluSp|SINE|Alu 24734 NM_000672 130 Hs.586161 NM_000672 ENSG00000172955 ADH6 ADH-5 alcohol dehydrogenase 6 (class V) protein-coding 242-269 chr4 85112071 85112221 + 2 NA Intergenic HAL1|LINE|L1 144662 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 224-97 chr14 95750851 95751037 + 2 NA intron (NR_148060, intron 2 of 2) L2b|LINE|L2 35461 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 480-167 chr2 220388507 220388868 + 2 NA Intergenic L1MA2|LINE|L1 -482122 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 201-61 chr12 47598468 47598587 + 2 NA Intergenic Intergenic 107503 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 267-328 chr5 45913495 45913672 + 2 NA Intergenic ALR/Alpha|Satellite|centr -217203 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 215-131 chr19 32512223 32512392 + 2 NA Intergenic Intergenic -68883 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 436-59 chr12 24391548 24391936 + 2 NA intron (NM_152989, intron 2 of 17) L3|LINE|CR1 168471 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 412-341 chr9 25881848 25882132 + 2 NA Intergenic L1MD|LINE|L1 101934 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 361-140 chr14 66292515 66292701 + 2 NA Intergenic Intergenic -193763 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 260-311 chr4 69478935 69479071 + 2 NA Intergenic L1PB2|LINE|L1 16902 NM_001297615 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 247-56 chr11 42364316 42364494 + 2 NA Intergenic L1MC3|LINE|L1 -110715 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 439-151 chr2 178943837 178944267 + 2 NA intron (NM_001316745, intron 6 of 11) intron (NM_001316745, intron 6 of 11) 106085 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 548-56 chr12 80552396 80552877 + 2 NA intron (NM_001145026, intron 25 of 44) intron (NM_001145026, intron 25 of 44) 108401 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 324-31 chr1 180712861 180713146 + 2 NA intron (NR_137330, intron 2 of 12) L1ME1|LINE|L1 80981 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 195-222 chr7 16803502 16803613 + 2 NA intron (NM_006408, intron 1 of 7) intron (NM_006408, intron 1 of 7) 1442 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 262-388 chr7 1343393 1343597 + 2 NA Intergenic AluSz|SINE|Alu 110623 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 454-17 chr10 9516860 9517244 + 2 NA Intergenic AluSx1|SINE|Alu -221459 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 286-468 chr8 131689457 131689636 + 2 NA Intergenic Intergenic -214547 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 220-316 chr6 50140934 50141139 + 2 NA Intergenic L2c|LINE|L2 -91107 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 348-149 chr14 86366967 86367167 + 2 NA Intergenic Intergenic 432389 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 306-474 chr7 64721512 64721688 + 2 NA Intergenic Intergenic 42536 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 338-137 chr12 104775506 104775701 + 2 NA Intergenic L2b|LINE|L2 182687 NM_001352171 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 172-139 chr8 122191764 122191877 + 2 NA Intergenic Intergenic 376824 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 208-251 chr7 108879089 108879244 + 2 NA Intergenic Intergenic 5421 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 531-160 chr3 109617662 109617955 + 2 NA Intergenic Intergenic 14980 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 522-146 chr2 184210375 184210744 + 2 NA Intergenic Intergenic -168416 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 305-513 chr7 96081165 96081463 + 2 NA intron (NM_001278422, intron 15 of 15) intron (NM_001278422, intron 15 of 15) 138442 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 357-342 chr5 46190987 46191256 + 2 NA Intergenic ALR/Alpha|Satellite|centr -494741 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 459-76 chr14 32760830 32761140 + 2 NA intron (NM_004274, intron 11 of 13) intron (NM_004274, intron 11 of 13) -177894 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 381-370 chr7 134393393 134393756 + 2 NA Intergenic Intergenic 65526 NM_001628 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 372-93 chr11 129655545 129655795 + 2 NA Intergenic L1PA13|LINE|L1 -38401 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 489-256 chr8 92485022 92485363 + 2 NA Intergenic LTR103b_Mam|LTR|ERV1? 170302 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 336-448 chr5 51636441 51636662 + 2 NA Intergenic L1ME3Cz|LINE|L1 253103 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 290-37 chr1 239392410 239392673 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 5973 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 333-28 chr1 112271389 112271566 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -124737 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 240-402 chr7 93190461 93190671 + 2 NA intron (NM_001346642, intron 9 of 9) intron (NM_001346642, intron 9 of 9) 29005 NM_001288810 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 759-4 chr1 152893517 152894249 + 2 NA Intergenic L1ME1|LINE|L1 -14662 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 359-40 chr1 231987240 231987582 + 2 NA intron (NM_001164538, intron 10 of 10) intron (NM_001164538, intron 10 of 10) 61577 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 316-597 chrUn_KI270522v1 753 916 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 278-19 chr1 207664823 207664990 + 2 NA intron (NM_175710, intron 1 of 11) L1ME3G|LINE|L1 19773 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 311-10 chr1 73071778 73072083 + 2 NA Intergenic L1ME1|LINE|L1 -234240 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 400-306 chr6 49730259 49730639 + 2 NA intron (NM_001368123, intron 7 of 7) intron (NM_001368123, intron 7 of 7) 13939 NM_006061 10321 Hs.404466 NM_006061 ENSG00000096006 CRISP3 Aeg2|CRISP-3|CRS3|SGP28|dJ442L6.3 cysteine rich secretory protein 3 protein-coding 271-401 chr7 35270080 35270332 + 2 NA Intergenic Intergenic -16106 NM_001077653 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 345-475 chr6 149211152 149211348 + 2 NA Intergenic Intergenic -6674 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 333-512 chr6 120476296 120476497 + 2 NA Intergenic L1MB1|LINE|L1 461217 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 378-257 chr20 50983268 50983586 + 2 NA Intergenic L1MB2|LINE|L1 24609 NM_014484 27304 Hs.159410 NM_014484 ENSG00000124217 MOCS3 UBA4 molybdenum cofactor synthesis 3 protein-coding 243-13 chr1 90957543 90957703 + 2 NA intron (NM_201269, intron 2 of 5) L1MB5|LINE|L1 63885 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 351-57 chr11 2643928 2644173 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 55948 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 457-150 chr22 25915209 25915633 + 2 NA intron (NM_001318245, intron 33 of 43) Tigger3a|DNA|TcMar-Tigger 173233 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 351-501 chr8 134663527 134663814 + 2 NA intron (NM_020863, intron 1 of 15) AluSx3|SINE|Alu 32885 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 199-126 chr2 167828660 167828812 + 2 NA intron (NM_020981, intron 1 of 1) MIRb|SINE|MIR 10064 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 260-67 chr10 117361892 117362114 + 2 NA intron (NM_173791, intron 1 of 4) MER2|DNA|TcMar-Tigger 13437 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 322-402 chr5 3090718 3090954 + 2 NA Intergenic Intergenic -86999 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 295-155 chr15 82161764 82161990 + 2 NA intron (NM_001040610, intron 14 of 17) intron (NM_001040610, intron 14 of 17) 73283 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 311-154 chr15 26333216 26333454 + 2 NA Intergenic L1PB4|LINE|L1 217522 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 234-237 chr3 63668487 63668698 + 2 NA Intergenic Intergenic 15917 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 270-411 chr8 127117198 127117401 + 2 NA Intergenic L2a|LINE|L2 -35078 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 408-57 chr11 24186349 24186724 + 2 NA Intergenic Intergenic -310517 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 175-127 chr5 25990696 25990837 + 2 NA Intergenic Intergenic 799813 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 269-441 chrX 106476035 106476235 + 2 NA Intergenic Intergenic -135795 NM_001184782 55086 Hs.274267 NM_018015 ENSG00000147231 RADX CXorf57 RPA1 related single stranded DNA binding protein, X-linked protein-coding 307-480 chr8 77883413 77883579 + 2 NA Intergenic Intergenic 432799 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 699-107 chr9 30634331 30634953 + 2 NA Intergenic Intergenic -226188 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 296-59 chr10 90315725 90315984 + 2 NA Intergenic Intergenic 224951 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 284-267 chr3 109745887 109746064 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 143147 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 318-9 chr1 42303529 42303796 + 2 NA intron (NM_001198850, intron 2 of 12) intron (NM_001198850, intron 2 of 12) 31293 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 249-460 chrX 39088014 39088164 + 2 NA Intergenic L1MB3|LINE|L1 239273 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 538-222 chr7 49186118 49186540 + 2 NA Intergenic Intergenic 261782 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 599-32 chr12 111134558 111135083 + 2 NA intron (NM_001370598, intron 1 of 21) L2b|LINE|L2 34816 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 506-129 chr2 35608365 35608690 + 2 NA Intergenic Intergenic 137122 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 350-25 chr1 181907442 181907728 + 2 NA Intergenic L1ME1|LINE|L1 154127 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 398-260 chr5 9924980 9925241 + 2 NA Intergenic Intergenic -21286 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 338-88 chr10 123567511 123567808 + 2 NA Intergenic Intergenic -98696 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 338-11 chr1 70871971 70872174 + 2 NA intron (NR_028293, intron 2 of 4) intron (NR_028293, intron 2 of 4) 165619 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 588-125 chr5 111620103 111620601 + 2 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) -107755 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 483-231 chr6 126236227 126236623 + 2 NA Intergenic Intergenic -103364 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 376-198 chr2 133555889 133556093 + 2 NA intron (NM_207481, intron 2 of 17) L1ME3A|LINE|L1 12472 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 574-56 chr17 70875815 70876277 + 2 NA Intergenic Intergenic 326133 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 690-23 chr12 18978336 18978910 + 2 NA Intergenic L2a|LINE|L2 -151110 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 439-224 chr5 12447774 12448067 + 2 NA Intergenic L1PA15|LINE|L1 -126937 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 422-284 chr7 63872947 63873166 + 2 NA Intergenic L1MB2|LINE|L1 -125750 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 325-86 chr10 112038455 112038720 + 2 NA Intergenic Intergenic 145178 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 346-492 chr8 92587311 92587595 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 68041 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 204-112 chr16 78315059 78315205 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 215478 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 511-223 chr6 40264779 40265257 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 90988 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 460-124 chr19 29834987 29835370 + 2 NA Intergenic L1ME3F|LINE|L1 23187 NM_001238 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 374-343 chr6 105559626 105559898 + 2 NA Intergenic Intergenic -156680 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 192-204 chr8 79895865 79895982 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -24186 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 331-439 chr5 147966683 147967008 + 2 NA Intergenic Intergenic -60307 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 328-588 chr8 137700145 137700348 + 2 NA Intergenic Intergenic -286658 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 250-259 chr22 22981284 22981436 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -89159 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 324-62 chr10 71176193 71176508 + 2 NA Intergenic L1MCa|LINE|L1 -36220 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 466-244 chr7 27337377 27337818 + 2 NA Intergenic Intergenic -90368 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 305-354 chr3 95257201 95257437 + 2 NA Intergenic Intergenic 319056 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 308-85 chr11 81354020 81354192 + 2 NA Intergenic Intergenic 536730 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 195-230 chr7 92254562 92254718 + 2 NA intron (NM_019004, intron 1 of 19) L1ME3G|LINE|L1 -8540 NM_001350672 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 524-198 chr5 51669166 51669448 + 2 NA Intergenic Intergenic 285859 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 323-149 chr14 70080646 70080848 + 2 NA promoter-TSS (NM_182936) promoter-TSS (NM_182936) -530 NM_182936 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 164-86 chr4 54197929 54198034 + 2 NA Intergenic Intergenic -31312 NM_001347827 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 227-217 chr21 44363494 44363660 + 2 NA intron (NM_003307, intron 2 of 31) L1MDa|LINE|L1 9976 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 235-115 chr15 59978844 59979043 + 2 NA Intergenic Intergenic -25368 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 281-253 chr20 7341763 7341920 + 2 NA Intergenic L1MA4A|LINE|L1 -5592 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 296-61 chr10 102127908 102128056 + 2 NA Intergenic AluJr|SINE|Alu -5012 NM_001288727 23082 Hs.533551 NM_015062 ENSG00000148840 PPRC1 PRC PPARG related coactivator 1 protein-coding 358-12 chr1 107189805 107190118 + 2 NA intron (NM_001113226, intron 1 of 6) L1MB3|LINE|L1 41892 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 425-277 chr7 15973762 15974170 + 2 NA Intergenic Intergenic -236520 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 347-282 chr21 18515589 18515809 + 2 NA Intergenic Intergenic -111914 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 316-236 chr19 33928048 33928292 + 2 NA Intergenic Intergenic 131300 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 162-134 chr8 106501841 106501968 + 2 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 53980 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 167-2 chr1 24883773 24883907 + 2 NA Intergenic L1MC1|LINE|L1 35576 NR_106789 102465437 NR_106789 ENSG00000278034 MIR6731 hsa-mir-6731 microRNA 6731 ncRNA 527-4 chr1 59525798 59526220 + 2 NA intron (NM_001278224, intron 1 of 9) (TG)n|Simple_repeat|Simple_repeat 10379 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 245-219 chr20 60643886 60644097 + 2 NA Intergenic Intergenic 79429 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 585-4 chr1 71310543 71310894 + 2 NA Intergenic Intergenic 229394 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 329-30 chr1 197725092 197725302 + 2 NA intron (NR_125340, intron 2 of 19) L1MEd|LINE|L1 50283 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 323-442 chr5 180841974 180842191 + 2 NA Intergenic L1MEg|LINE|L1 -10464 NR_045680 100859930 Hs.655606 NR_045680 ENSG00000278970 HEIH HCCAT2|LINC-HEIH|LINC00848|lncRNA-HEIH hepatocellular carcinoma up-regulated EZH2-associated long non-coding RNA ncRNA 444-227 chr6 155681275 155681618 + 2 NA Intergenic Intergenic 166602 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 246-260 chr3 87409485 87409675 + 2 NA Intergenic Intergenic -132996 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 328-350 chr3 65411112 65411379 + 2 NA intron (NM_001365904, intron 12 of 24) intron (NM_001365904, intron 12 of 24) -482571 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 595-139 chr5 148353000 148353534 + 2 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 17708 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 266-224 chr21 27009315 27009570 + 2 NA Intergenic LTR89|LTR|ERVL? -42354 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 464-141 chr2 231106900 231107199 + 2 NA intron (NM_001191037, intron 16 of 23) intron (NM_001191037, intron 16 of 23) 17993 NM_001320758 3357 Hs.421649 NM_000867 ENSG00000135914 HTR2B 5-HT(2B)|5-HT-2B|5-HT2B 5-hydroxytryptamine receptor 2B protein-coding 175-34 chr11 60508329 60508480 + 2 NA TTS (NM_001164470) TTS (NM_001164470) -6988 NM_001100909 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 319-474 chr6 122582738 122583025 + 2 NA intron (NM_001270393, intron 3 of 7) L2a|LINE|L2 -27351 NM_032471 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 862-36 chr8 126351924 126352613 + 2 NA Intergenic Intergenic 26773 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 165-57 chr2 167408958 167409086 + 2 NA Intergenic L1MA4|LINE|L1 221650 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 284-320 chr5 53538918 53539085 + 2 NA Intergenic L1ME4a|LINE|L1 -21638 NM_001318051 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 508-20 chr1 241655797 241656146 + 2 NA intron (NM_001367482, intron 1 of 27) L2c|LINE|L2 3690 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 194-100 chr2 169406572 169406704 + 2 NA Intergenic Intergenic -44104 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 352-94 chr12 16942293 16942513 + 2 NA Intergenic L1ME1|LINE|L1 -46344 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 357-402 chr6 164423510 164423694 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 398461 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 258-334 chr5 136353630 136353848 + 2 NA intron (NM_020389, intron 2 of 11) intron (NM_020389, intron 2 of 11) 11737 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 500-116 chr19 16819939 16820291 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR -9283 NM_015260 23309 Hs.13999 NM_015260 ENSG00000127511 SIN3B - SIN3 transcription regulator family member B protein-coding 365-100 chr12 61666267 61666570 + 2 NA Intergenic LTR49-int|LTR|ERV1 526421 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 460-144 chr2 99911986 99912277 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 193452 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 438-8 chr1 63956493 63956768 + 2 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 155575 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 330-305 chr2 184853074 184853396 + 2 NA intron (NM_194250, intron 1 of 3) L1MA8|LINE|L1 254706 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 170-30 chr12 1341235 1341346 + 2 NA intron (NR_027948, intron 15 of 19) AluSc8|SINE|Alu -159201 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 364-175 chr17 71931510 71931727 + 2 NA Intergenic Intergenic 94361 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 223-216 chr3 79253807 79253919 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -157864 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 287-121 chr13 22331664 22331942 + 2 NA Intergenic Intergenic 121518 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 370-401 chr6 104417869 104418099 + 2 NA Intergenic Intergenic 441562 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 490-136 chr2 31685768 31686109 + 2 NA Intergenic L1MC5a|LINE|L1 -105000 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 396-99 chr13 76191152 76191496 + 2 NA Intergenic LTR12C|LTR|ERV1 -256192 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 200-236 chr6 61695511 61695673 + 2 NA intron (NR_146874, intron 8 of 13) intron (NR_146874, intron 8 of 13) 121462 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 287-63 chr10 79234074 79234261 + 2 NA intron (NM_020338, intron 7 of 24) L2|LINE|L2 -113302 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 279-42 chr10 59576145 59576382 + 2 NA Intergenic Intergenic 133628 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 269-6 chr1 40525107 40525373 + 2 NA Intergenic L1MA5A|LINE|L1 -6397 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 305-291 chr2 196820517 196820815 + 2 NA Intergenic Intergenic -10390 NM_213608 401027 Hs.245666 NM_213608 ENSG00000187944 C2orf66 IIDS6411|UNQ6411 chromosome 2 open reading frame 66 protein-coding 329-3 chr1 36997121 36997299 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 37305 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 283-455 chr9 22428787 22429061 + 2 NA Intergenic Intergenic -17900 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 258-443 chrX 139800748 139800958 + 2 NA intron (NM_001353812, intron 7 of 29) intron (NM_001353812, intron 7 of 29) 31388 NM_001010986 286410 Hs.88252 NM_173694 ENSG00000101974 ATP11C ATPIG|ATPIQ|HACXL ATPase phospholipid transporting 11C protein-coding 471-11 chr1 172201880 172202165 + 2 NA intron (NR_146559, intron 15 of 20) L1PA14|LINE|L1 -57187 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 684-106 chr5 178323031 178323539 + 2 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -90463 NR_103510 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 456-304 chr7 85943734 85944032 + 2 NA Intergenic Intergenic 522761 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 332-583 chrX 42198585 42198767 + 2 NA Intergenic L1MA7|LINE|L1 -275122 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 275-181 chr2 41535981 41536164 + 2 NA Intergenic Intergenic -341483 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 372-519 chr9 104596039 104596286 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 3251 NM_001004482 138799 Hs.553598 NM_001004482 ENSG00000277556 OR13C5 OR9-11 olfactory receptor family 13 subfamily C member 5 protein-coding 339-568 chr8 77676744 77677021 + 2 NA Intergenic L1MA6|LINE|L1 226185 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 290-170 chr17 28363130 28363378 + 2 NA 3' UTR (NM_152464, exon 6 of 6) 3' UTR (NM_152464, exon 6 of 6) 1897 NM_001080837 645832 NM_001080837 ENSG00000274529 SEBOX OG-9|OG9|OG9X SEBOX homeobox protein-coding 393-282 chr5 110997944 110998296 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -71960 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 321-258 chr19 9503311 9503516 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -4797 NM_001351678 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 504-37 chr11 50593675 50594065 + 2 NA Intergenic ALR/Alpha|Satellite|centr 184723 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 474-270 chr7 64248103 64248575 + 2 NA intron (NM_153363, intron 1 of 4) AluSx4|SINE|Alu 19865 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 257-38 chr10 53799249 53799429 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -686891 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 235-216 chr22 27620229 27620413 + 2 NA Intergenic Intergenic 181435 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 220-101 chr13 64960254 64960465 + 2 NA Intergenic L1MEd|LINE|L1 -884348 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 235-309 chr6 69334032 69334199 + 2 NA intron (NM_001704, intron 24 of 31) intron (NM_001704, intron 24 of 31) 462351 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 602 chr1 22301471 22301897 + 2 NA Intergenic L1PA13|LINE|L1 35445 NR_039613 100616433 NR_039613 ENSG00000266564 MIR4418 - microRNA 4418 ncRNA 278-284 chr3 102080547 102080719 + 2 NA Intergenic HAL1|LINE|L1 -83072 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 208-258 chr8 39960439 39960603 + 2 NA intron (NM_194294, intron 2 of 10) intron (NM_194294, intron 2 of 10) 25566 NM_194294 169355 Hs.676257 NM_194294 ENSG00000188676 IDO2 INDOL1 indoleamine 2,3-dioxygenase 2 protein-coding 364-83 chr11 26554838 26555119 + 2 NA intron (NM_031418, intron 13 of 26) L1MEc|LINE|L1 17285 NM_145650 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 395-259 chr4 147305608 147305969 + 2 NA Intergenic Intergenic 38929 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 289-288 chr3 10693679 10693840 + 2 NA Intergenic L2a|LINE|L2 -66952 NR_046766 100874325 Hs.143004 NR_046766 ENSG00000224771 ATP2B2-IT2 - ATP2B2 intronic transcript 2 ncRNA 156 chr1 24633097 24633235 + 2 NA Intergenic MIRc|SINE|MIR -10136 NM_001366578 10250 Hs.18192 NM_005839 ENSG00000133226 SRRM1 160-KD|POP101|SRM160 serine and arginine repetitive matrix 1 protein-coding 329-316 chr2 237655702 237655877 + 2 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) 28202 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 200-115 chr19 36898704 36898819 + 2 NA intron (NM_001037232, intron 5 of 5) L1M2|LINE|L1 17278 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 283-86 chr11 92739008 92739247 + 2 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 176501 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 412-278 chr6 63935871 63936131 + 2 NA intron (NM_001292009, intron 35 of 43) L2c|LINE|L2 129165 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 270-387 chr8 88274532 88274745 + 2 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 52845 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 456-164 chr2 126709920 126710323 + 2 NA Intergenic L1MEd|LINE|L1 53963 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 380-240 chr22 49220682 49220902 + 2 NA Intergenic AluSq|SINE|Alu 322674 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 127-24 chr12 25702049 25702131 + 2 NA Intergenic L1MEc|LINE|L1 -53512 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 218-16 chr1 188834628 188834794 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 1391083 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 209-70 chr12 53268353 53268516 + 2 NA intron (NM_012291, intron 1 of 30) CpG 135 NM_012291 9700 Hs.153479 NM_012291 ENSG00000135476 ESPL1 ESP1|SEPA extra spindle pole bodies like 1, separase protein-coding 368-465 chr8 121173878 121174187 + 2 NA Intergenic LTR33A|LTR|ERVL -361986 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 571-132 chr5 37884688 37885140 + 2 NA Intergenic LTR85c|LTR|Gypsy? 44476 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 551-209 chr8 59613728 59614187 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 494747 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 354-41 chr10 14306097 14306442 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 24615 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 209-265 chr5 158430771 158430939 + 2 NA Intergenic Intergenic -21082 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 274-137 chr15 26073903 26074140 + 2 NA Intergenic Intergenic -41792 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 155-14 chr1 158362398 158362515 + 2 NA Intergenic L1MA10|LINE|L1 8562 NM_030893 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 608-41 chr14 72271512 72272009 + 2 NA intron (NM_001370288, intron 2 of 16) MLT1D|LTR|ERVL-MaLR -245060 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 266-137 chr16 13837136 13837290 + 2 NA Intergenic AluSc8|SINE|Alu -82944 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 236-345 chr8 36942321 36942480 + 2 NA Intergenic L1PA15|LINE|L1 158026 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 161-119 chr8 77889543 77889648 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 438898 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 372-47 chr10 62138400 62138590 + 2 NA Intergenic MER21C|LTR|ERVL 89138 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 286-347 chr5 26708667 26708883 + 2 NA Intergenic L1M3|LINE|L1 329811 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 299-132 chr14 56723442 56723614 + 2 NA Intergenic Intergenic 82139 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 195-214 chr6 69547789 69547950 + 2 NA Intergenic Intergenic 248597 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 214-183 chr2 238527201 238527337 + 2 NA intron (NR_037809, intron 2 of 2) L1M5|LINE|L1 28230 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 355-535 chr9 79081569 79081768 + 2 NA Intergenic L1MEd|LINE|L1 63998 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 204-21 chr10 15649907 15650056 + 2 NA intron (NM_001291494, intron 10 of 28) L1MC2|LINE|L1 69941 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 238-322 chr6 64477241 64477386 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 670477 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 298-305 chr3 113489879 113490054 + 2 NA intron (NM_001331078, intron 6 of 17) L2c|LINE|L2 24878 NM_001331079 152185 Hs.477144 NM_144718 ENSG00000163611 SPICE1 CCDC52|SPICE spindle and centriole associated protein 1 protein-coding 287-286 chr4 84461191 84461428 + 2 NA Intergenic Intergenic 36925 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 425-34 chr10 44930770 44931078 + 2 NA intron (NM_001123376, intron 2 of 4) MIR|SINE|MIR 19587 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 236-42 chr10 53683116 53683295 + 2 NA Intergenic Intergenic -803025 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 221-210 chr4 35483797 35484010 + 2 NA Intergenic Intergenic 760036 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 189-23 chr10 94167398 94167573 + 2 NA intron (NM_001165979, intron 2 of 31) L2a|LINE|L2 -58691 NR_120616 101927049 Hs.144492 NR_120615 ENSG00000232913 PLCE1-AS2 - PLCE1 antisense RNA 2 ncRNA 518-255 chr6 56433706 56434091 + 2 NA Intergenic Intergenic -39770 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 444-177 chr4 114339061 114339340 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -259202 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 500-167 chr20 42116018 42116442 + 2 NA intron (NM_133170, intron 22 of 31) MER103C|DNA|hAT-Charlie -497853 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 298-239 chr2 175986261 175986525 + 2 NA intron (NM_001305011, intron 2 of 10) L1M7|LINE|L1 15874 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 268-307 chr5 43350305 43350533 + 2 NA Intergenic LTR41|LTR|ERVL -37007 NM_002130 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 276-243 chr2 156128039 156128203 + 2 NA intron (NR_110250, intron 1 of 3) MIRb|SINE|MIR 126810 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 378-371 chr6 54119917 54120213 + 2 NA intron (NM_001281747, intron 1 of 13) L2|LINE|L2 8622 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 202-210 chr5 82818226 82818350 + 2 NA Intergenic Intergenic -21867 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 469-50 chr11 43160807 43161256 + 2 NA Intergenic SATR1|Satellite|Satellite 108338 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 237-375 chr8 80734149 80734333 + 2 NA intron (NM_001033723, intron 2 of 8) MLT1F1|LTR|ERVL-MaLR 140227 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 445-217 chr5 27095021 27095410 + 2 NA Intergenic Intergenic -56629 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 463-21 chr1 110122492 110122818 + 2 NA Intergenic LTR67B|LTR|ERVL 10212 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 286-240 chr2 238422116 238422319 + 2 NA Intergenic Intergenic -4710 NM_001040445 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 476-138 chr2 66001346 66001708 + 2 NA Intergenic Intergenic 356801 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 127-19 chr11 95539491 95539588 + 2 NA Intergenic L2c|LINE|L2 250243 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 321-262 chr19 27559415 27559657 + 2 NA Intergenic ALR/Alpha|Satellite|centr -233895 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 419-180 chr3 46022500 46022873 + 2 NA intron (NM_005283, intron 1 of 2) MER4D1|LTR|ERV1 4797 NM_001024644 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 317-341 chr4 42813838 42814121 + 2 NA Intergenic L2b|LINE|L2 -79287 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 347-524 chr8 120860383 120860672 + 2 NA Intergenic Intergenic -48481 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 271-443 chr8 91767171 91767389 + 2 NA Intergenic Intergenic 250400 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 234-267 chr4 35374791 35374985 + 2 NA Intergenic Intergenic 869051 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 281-366 chr5 92348694 92348880 + 2 NA Intergenic L1PA14|LINE|L1 -965470 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 255-67 chr11 115131430 115131644 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -202040 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 454-296 chr7 62678568 62678859 + 2 NA Intergenic ALR/Alpha|Satellite|centr 625343 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 330-276 chr2 102366033 102366254 + 2 NA intron (NM_001371424, intron 2 of 8) THE1C-int|LTR|ERVL-MaLR 9860 NM_003855 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 234-84 chr13 21705857 21706057 + 2 NA Intergenic Intergenic 34884 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 213-245 chr5 161131639 161131793 + 2 NA Intergenic L2b|LINE|L2 -193090 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 622-35 chr15 88399373 88399852 + 2 NA Intergenic Intergenic 67776 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 334-271 chr2 84067159 84067483 + 2 NA Intergenic Intergenic -223361 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 334-76 chr10 121461319 121461581 + 2 NA Intergenic Intergenic 69864 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 529-39 chr11 117990798 117991245 + 2 NA intron (NM_001558, intron 3 of 6) AluSx|SINE|Alu 4627 NR_026691 3587 Hs.504035 NM_001558 ENSG00000110324 IL10RA CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R interleukin 10 receptor subunit alpha protein-coding 509-271 chrX 30043416 30043777 + 2 NA Intergenic AluSx|SINE|Alu -171967 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 203-2 chr1 17980899 17981047 + 2 NA Intergenic Intergenic -84684 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 302-266 chr22 28373793 28373959 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -85993 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 276-60 chr10 76771542 76771687 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -116430 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 252-173 chr19 33853729 33853968 + 2 NA Intergenic L1M2|LINE|L1 56978 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 622-116 chr6 52820931 52821538 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -17418 NM_145740 2938 Hs.446309 NM_145740 ENSG00000243955 GSTA1 GST-epsilon|GST2|GSTA1-1|GTH1 glutathione S-transferase alpha 1 protein-coding 388-311 chr6 121691804 121692075 + 2 NA Intergenic Intergenic 256293 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 202-95 chr17 62796328 62796500 + 2 NA intron (NM_001288780, intron 3 of 10) MARNA|DNA|TcMar-Mariner 10226 NM_001100875 162333 Hs.665663 NM_152598 ENSG00000173838 MARCH10 MARCH-X|RNF190 membrane associated ring-CH-type finger 10 protein-coding 349-321 chr3 5934112 5934305 + 2 NA Intergenic L1ME1|LINE|L1 -683953 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 698-37 chr2 136460732 136461193 + 2 NA Intergenic Intergenic -304583 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 120-41 chr5 105712145 105712216 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 612706 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 364-246 chr20 41846768 41847026 + 2 NA Intergenic L1M5|LINE|L1 -228520 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 340-18 chr1 109142764 109143040 + 2 NA intron (NM_001284352, intron 1 of 20) L1MB7|LINE|L1 28787 NM_020775 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 314-288 chr2 79115674 79115952 + 2 NA Intergenic L1MA5|LINE|L1 -4675 NM_002909 5967 Hs.49407 NM_002909 ENSG00000115386 REG1A ICRF|P19|PSP|PSPS|PSPS1|PTP|REG regenerating family member 1 alpha protein-coding 267-342 chr5 105059034 105059280 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -40317 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 315-156 chr15 87218477 87218754 + 2 NA Intergenic MIRb|SINE|MIR -230189 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 324-126 chr12 105439487 105439722 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 108913 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 247-380 chr7 37965830 37966070 + 2 NA Intergenic MIR|SINE|MIR 44631 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 388-82 chr12 65704651 65704947 + 2 NA Intergenic L1MA5|LINE|L1 -62427 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 533-91 chr19 29098702 29099078 + 2 NA Intergenic Intergenic 96335 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 297-244 chr2 197053341 197053559 + 2 NA intron (NM_001367496, intron 16 of 27) intron (NM_001367496, intron 16 of 27) -126743 NM_001321100 80055 Hs.229988 NM_024989 ENSG00000197121 PGAP1 Bst1|ISPD3024|MRT42|SPG67 post-GPI attachment to proteins 1 protein-coding 369-38 chr10 52390681 52390970 + 2 NA Intergenic Intergenic 64447 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 294-254 chr2 230071273 230071533 + 2 NA Intergenic L1MA10|LINE|L1 -2479 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 558-139 chr3 104699571 104699962 + 2 NA Intergenic MIR|SINE|MIR -666947 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 376-246 chr3 71747327 71747632 + 2 NA intron (NM_173359, intron 1 of 7) L1MB7|LINE|L1 6112 NM_001282886 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 316-475 chr6 18486092 18486369 + 2 NA Intergenic Intergenic -36517 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 189-222 chr9 15155561 15155714 + 2 NA Intergenic Intergenic 94581 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 327-440 chr6 73975121 73975434 + 2 NA Intergenic Intergenic -94174 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 350-118 chr13 72478015 72478250 + 2 NA Intergenic L1MA8|LINE|L1 249497 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 155-51 chr2 57108098 57108247 + 2 NA Intergenic Intergenic -799479 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 202-209 chr5 81514254 81514422 + 2 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) -120204 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 198-261 chr9 137911873 137912043 + 2 NA intron (NM_001243812, intron 3 of 45) L2|LINE|L2 -19388 NR_121583 100133077 Hs.640081 NR_121583 ENSG00000203987 LOC100133077 - uncharacterized LOC100133077 ncRNA 701-28 chr16 5571551 5572108 + 2 NA Intergenic LTR3|LTR|ERVK 44421 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 263-198 chr2 67584660 67584883 + 2 NA Intergenic L1PA15-16|LINE|L1 187438 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 303-488 chr9 24589539 24589776 + 2 NA Intergenic L1MEg|LINE|L1 -43760 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 311-159 chr15 60277775 60277970 + 2 NA Intergenic L1ME3Cz|LINE|L1 120114 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 472-53 chr12 19741342 19741687 + 2 NA Intergenic Intergenic -273171 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 304-445 chr5 165507196 165507353 + 2 NA Intergenic L1M4|LINE|L1 1036995 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 406-287 chr8 23820023 23820310 + 2 NA Intergenic MLT2B3|LTR|ERVL 34640 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 375-248 chr21 36347200 36347503 + 2 NA intron (NM_015358, intron 8 of 16) intron (NM_015358, intron 8 of 16) 27154 NM_015358 23515 Hs.421150 NM_015358 ENSG00000159256 MORC3 NXP2|ZCW5|ZCWCC3 MORC family CW-type zinc finger 3 protein-coding 416-279 chr5 113706103 113706346 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 192530 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 448-87 chr15 86338925 86339283 + 2 NA intron (NM_152336, intron 17 of 24) L1MDa|LINE|L1 -22136 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 185-107 chr2 166281321 166281447 + 2 NA intron (NM_001365536, intron 13 of 26) intron (NM_001365536, intron 13 of 26) 94560 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 295-379 chr5 76106736 76106975 + 2 NA intron (NM_014979, intron 1 of 12) L2a|LINE|L2 23472 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 424-231 chr5 162302608 162302954 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 235139 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 208-204 chr5 25700198 25700353 + 2 NA Intergenic Intergenic 509322 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 193-97 chr2 31707742 31707920 + 2 NA Intergenic LTR16B|LTR|ERVL 96149 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 367-279 chr3 37728338 37728586 + 2 NA intron (NM_002207, intron 18 of 27) intron (NM_002207, intron 18 of 27) 133318 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 374-197 chr2 122662231 122662481 + 2 NA Intergenic Intergenic 411125 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 833-27 chr4 422498 423090 + 2 NA Intergenic L1M3a|LINE|L1 51415 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 274-416 chr9 126149064 126149302 + 2 NA Intergenic Intergenic 126732 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 312-252 chr2 114530216 114530491 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 68776 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 318-440 chr5 52724167 52724388 + 2 NA Intergenic Intergenic -63639 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 451-222 chr7 104313909 104314173 + 2 NA Intergenic L2c|LINE|L2 -14615 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 377-325 chr5 87902056 87902362 + 2 NA Intergenic Intergenic 240167 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 458-25 chr10 82439264 82439608 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -206516 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 295-89 chr12 1899519 1899666 + 2 NA intron (NM_172364, intron 6 of 37).2 L1MEd|LINE|L1 19060 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 307-443 chr7 11739144 11739370 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 92941 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 495-216 chr6 56000968 56001399 + 2 NA Intergenic Intergenic 90479 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 305-259 chr2 75863729 75863907 + 2 NA Intergenic Intergenic -152903 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 123-64 chr9 127458631 127458706 + 2 NA intron (NM_001190723, intron 6 of 24) intron (NM_001190723, intron 6 of 24) 6413 NM_001005374 90678 Hs.495188 NM_138361 ENSG00000148356 LRSAM1 CMT2P|RIFLE|TAL leucine rich repeat and sterile alpha motif containing 1 protein-coding 276-438 chr8 18247477 18247662 + 2 NA Intergenic L1M1|LINE|L1 25901 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 245-280 chr5 42489804 42490011 + 2 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) -58136 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 323-264 chr2 108393153 108393402 + 2 NA Intergenic L1M4c|LINE|L1 15323 NM_006588 27233 Hs.312644 NM_006588 ENSG00000198075 SULT1C4 SULT1C|SULT1C2 sulfotransferase family 1C member 4 protein-coding 310-324 chr3 58739177 58739350 + 2 NA Intergenic Intergenic -72489 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 285-270 chr3 84445954 84446194 + 2 NA Intergenic Intergenic 423501 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 279-290 chr4 56583769 56583989 + 2 NA intron (NM_001256475, intron 5 of 8) MER112|DNA|hAT-Charlie 53273 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 330-391 chr4 162573789 162574002 + 2 NA Intergenic Intergenic -409861 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 245-8 chr1 106516427 106516658 + 2 NA Intergenic Intergenic -301697 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 306-200 chr17 72163818 72164083 + 2 NA Intergenic Intergenic 42930 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 363-488 chrX 93142589 93142770 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -317776 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 377-416 chr8 133098344 133098630 + 2 NA intron (NM_003235, intron 43 of 47) intron (NM_003235, intron 43 of 47) 4115 NM_001045557 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 335-396 chr4 129144093 129144375 + 2 NA Intergenic Intergenic 48082 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 514-220 chr5 45573133 45573578 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 123025 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 303-352 chr5 33560868 33561097 + 2 NA intron (NM_001324512, intron 18 of 21) intron (NM_001324512, intron 18 of 21) 120206 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 416-353 chr9 83094908 83095216 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy -31920 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 587-6 chr1 78719862 78720256 + 2 NA Intergenic Intergenic 70228 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 368-50 chr10 43779705 43779996 + 2 NA promoter-TSS (NR_134483) promoter-TSS (NR_134483) -948 NR_134483 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 627-29 chr14 45031744 45032254 + 2 NA intron (NR_131765, intron 10 of 19) AluSz|SINE|Alu -52117 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 579-99 chr3 35746509 35746824 + 2 NA intron (NM_016300, intron 18 of 19) intron (NM_016300, intron 18 of 19) 2190 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 556-204 chr7 40915463 40915869 + 2 NA Intergenic Intergenic 64273 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 289-163 chr16 7176316 7176566 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -156404 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 314-551 chr8 17671134 17671346 + 2 NA intron (NR_156437, intron 7 of 13) intron (NR_156437, intron 7 of 13) 5261 NM_001330470 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 449-274 chr8 89333160 89333541 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 424361 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 330-241 chr19 37401280 37401479 + 2 NA Intergenic L1MB5|LINE|L1 30280 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 275-136 chr16 80495982 80496165 + 2 NA intron (NR_120307, intron 2 of 5) HAL1|LINE|L1 -44661 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 295-449 chr7 109270232 109270472 + 2 NA Intergenic L1MA9|LINE|L1 -385765 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 220-15 chr1 116043687 116043851 + 2 NA intron (NM_018420, intron 8 of 11) L1MEc|LINE|L1 -66493 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 368-264 chr20 39441751 39441971 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -217113 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 353-187 chr17 58958781 58959092 + 2 NA intron (NR_048561, intron 2 of 5) intron (NR_048561, intron 2 of 5) 147944 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 379-395 chrX 122080660 122081020 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie 709868 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 343-352 chr3 114185396 114185599 + 2 NA intron (NM_001282563, intron 1 of 7) L1M4c|LINE|L1 -6445 NM_000796 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 308-283 chr3 1436764 1437018 + 2 NA Intergenic Intergenic 343867 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 533-213 chr7 31090957 31091319 + 2 NA intron (NM_001199637, intron 10 of 13) L1PA16|LINE|L1 38677 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 530-13 chr1 174138079 174138586 + 2 NA intron (NR_121197, intron 3 of 3) L2c|LINE|L2 20955 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 174-25 chr11 107415131 107415269 + 2 NA intron (NM_152434, intron 10 of 17) L2a|LINE|L2 42646 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 200-281 chr8 140029600 140029740 + 2 NA intron (NM_001160372, intron 17 of 22) L1MC|LINE|L1 70865 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 414-102 chr15 93510346 93510692 + 2 NA Intergenic L1ME3G|LINE|L1 304453 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 133-12 chr11 82092204 82092278 + 2 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -201405 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 220-227 chr3 69374535 69374710 + 2 NA intron (NM_015123, intron 1 of 22) intron (NM_015123, intron 1 of 22) 11466 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 446-141 chr2 52835505 52835771 + 2 NA Intergenic L2c|LINE|L2 -133023 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 268-59 chr10 118603500 118603723 + 2 NA Intergenic MamRep1527|LTR|LTR -7963 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 297-455 chr8 16531042 16531224 + 2 NA Intergenic Kanga1b|DNA|TcMar-Tc2 -338342 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 291-253 chr20 987802 988038 + 2 NA intron (NM_001029871, intron 1 of 4) L2b|LINE|L2 14391 NM_001029871 343637 Hs.444980 NM_001029871 ENSG00000101282 RSPO4 C20orf182|CRISTIN4 R-spondin 4 protein-coding 293-414 chr7 126425772 126426012 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 632292 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 284-231 chr20 20349707 20349928 + 2 NA intron (NM_015585, intron 26 of 26) L1MA8|LINE|L1 -18287 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 289-446 chr7 107481829 107482033 + 2 NA intron (NM_181733, intron 6 of 20) intron (NM_181733, intron 6 of 20) 11874 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 286-199 chr2 37792588 37792811 + 2 NA Intergenic L1PA13|LINE|L1 37012 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 328-440 chr5 24846979 24847214 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -6513 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 213-100 chr15 64559002 64559206 + 2 NA intron (NM_015042, intron 1 of 8) intron (NM_015042, intron 1 of 8) 59684 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 357-298 chr4 341667 341897 + 2 NA intron (NM_001348277, intron 1 of 1) intron (NM_001348277, intron 1 of 1) 3968 NM_003441 7700 Hs.654355 NM_003441 ENSG00000131127 ZNF141 D4S90|pHZ-44 zinc finger protein 141 protein-coding 321-119 chr12 3900805 3900970 + 2 NA Intergenic Intergenic -27439 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 625-11 chr10 44458098 44458528 + 2 NA Intergenic Intergenic -73216 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 301-320 chr4 74016403 74016663 + 2 NA Intergenic Intergenic -17856 NM_002994 6374 Hs.89714 NM_002994 ENSG00000163735 CXCL5 ENA-78|SCYB5 C-X-C motif chemokine ligand 5 protein-coding 611-66 chr18 54143354 54143863 + 2 NA Intergenic L1M2|LINE|L1 78804 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 419-220 chr5 8555106 8555466 + 2 NA Intergenic L1MC3|LINE|L1 94361 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 336-463 chr5 110520111 110520423 + 2 NA intron (NM_001039763, intron 12 of 13) L1MA4|LINE|L1 -6352 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 325-264 chr2 56857303 56857502 + 2 NA Intergenic L1PA15|LINE|L1 -671632 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 257-86 chr12 24079762 24079984 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -128841 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 228-224 chr3 134080263 134080477 + 2 NA Intergenic L1MC5a|LINE|L1 -22722 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 275-108 chr14 48563359 48563519 + 2 NA Intergenic Intergenic -768425 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 425-239 chr5 124378095 124378325 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 60310 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 279-129 chr16 79039934 79040205 + 2 NA intron (NM_001291997, intron 7 of 7) MIR|SINE|MIR 560668 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 393-254 chr4 168430425 168430662 + 2 NA exon (NM_001291510, exon 13 of 30) exon (NM_001291510, exon 13 of 30) 49949 NM_001345927 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DExD/H-box 60 like protein-coding 268-63 chr11 28828966 28829149 + 2 NA Intergenic Intergenic -351509 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 228-50 chr11 23366554 23366773 + 2 NA Intergenic Intergenic 52527 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 323-30 chr1 187088624 187088825 + 2 NA Intergenic L1MEg|LINE|L1 -4118 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 403-135 chr18 7296439 7296679 + 2 NA Intergenic L1MB7|LINE|L1 65455 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 279-433 chr9 17555776 17555965 + 2 NA Intergenic Intergenic -23196 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 299-362 chr5 41959676 41959915 + 2 NA Intergenic L1MA8|LINE|L1 34514 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 197-134 chr3 68688460 68688609 + 2 NA Intergenic AluSz6|SINE|Alu 187897 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 290-231 chr2 197634327 197634550 + 2 NA intron (NM_144629, intron 3 of 8) intron (NM_144629, intron 3 of 8) 41149 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 220-293 chr5 101579292 101579470 + 2 NA Intergenic Intergenic -676099 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 272-490 chrX 82638368 82638625 + 2 NA Intergenic L1MA3|LINE|L1 -869794 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 355-266 chr2 194597869 194598208 + 2 NA Intergenic Intergenic -132557 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 227-183 chr2 133934083 133934257 + 2 NA Intergenic L1ME3A|LINE|L1 -185765 NM_001371457 319-307 chr21 35994791 35995080 + 2 NA intron (NR_110418, intron 1 of 5) intron (NR_110418, intron 1 of 5) 9732 NR_110418 101928269 Hs.589909 NR_110418 LOC101928269 - uncharacterized LOC101928269 ncRNA 370-114 chr12 60042785 60042991 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 353518 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 334-267 chr2 76081883 76082100 + 2 NA Intergenic MamRep1151|LTR?|LTR? -371076 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 178-134 chr7 56443795 56443945 + 2 NA intron (NR_029420, intron 1 of 5) L1MA3|LINE|L1 4505 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 432-206 chr4 106755088 106755352 + 2 NA Intergenic L1MA7|LINE|L1 281093 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 567-144 chr5 14251562 14252037 + 2 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 108457 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 364-29 chr1 178351753 178351962 + 2 NA intron (NM_004841, intron 1 of 15) MER75|DNA|PiggyBac 10406 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 410-108 chr17 80549724 80550115 + 2 NA intron (NM_020761, intron 1 of 33) intron (NM_020761, intron 1 of 33) 5081 NM_001163034 57521 Hs.133044 NM_020761 ENSG00000141564 RPTOR KOG1|Mip1 regulatory associated protein of MTOR complex 1 protein-coding 262-334 chr5 11548592 11548829 + 2 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 40207 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 237-122 chr15 71062950 71063082 + 2 NA Intergenic L1MA5|LINE|L1 -78433 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 560-2 chr1 30144216 30144607 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -106799 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 436-133 chr2 66944272 66944666 + 2 NA intron (NR_110169, intron 3 of 4) Tigger15a|DNA|TcMar-Tigger -21979 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 316-319 chr20 42835816 42836023 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -132824 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 320-544 chr8 76263544 76263844 + 2 NA Intergenic Intergenic -142960 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 323-191 chr17 79515622 79515909 + 2 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) 383 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 324-308 chr20 37175642 37175875 + 2 NA intron (NM_152503, intron 2 of 24) AluJo|SINE|Alu -3288 NM_001135771 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 308-378 chr5 40572871 40573147 + 2 NA Intergenic Intergenic -106906 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 340-456 chr5 84769413 84769707 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -384680 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 157-66 chr2 132776704 132776804 + 2 NA intron (NM_207481, intron 13 of 17) Tigger19a|DNA|TcMar-Tigger -105228 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 231-269 chr4 164562081 164562235 + 2 NA Intergenic L1PA17|LINE|L1 -178903 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 370-345 chr4 63623777 63624079 + 2 NA Intergenic Intergenic 785522 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 244-171 chr2 116266606 116266824 + 2 NA Intergenic Intergenic 922900 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 253-337 chr5 98535767 98535928 + 2 NA Intergenic Intergenic -232785 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 323-135 chr14 35024212 35024485 + 2 NA intron (NM_003136, intron 14 of 15) intron (NM_003136, intron 14 of 15) -20559 NM_001079519 283635 Hs.446357 NM_173607 ENSG00000151327 FAM177A1 C14orf24 family with sequence similarity 177 member A1 protein-coding 337-228 chr19 27886986 27887286 + 2 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -93196 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 162-137 chr8 113766812 113766915 + 2 NA Intergenic Intergenic -329924 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 299-470 chr8 133840675 133840880 + 2 NA Intergenic L1ME3E|LINE|L1 -45719 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 304-263 chr2 112515270 112515457 + 2 NA intron (NM_153712, intron 5 of 6) MER58C|DNA|hAT-Charlie -26552 NM_001282777 84172 Hs.745127 NM_019014 ENSG00000125630 POLR1B RPA135|RPA2|Rpo1-2 RNA polymerase I subunit B protein-coding 355-223 chr19 55790778 55791043 + 2 NA intron (NM_001297743, intron 6 of 8) intron (NM_001297743, intron 6 of 8) 21792 NM_001277397 729974 NM_001277397 ENSG00000229292 RFPL4AL1 RNF210B ret finger protein like 4A like 1 protein-coding 247-93 chr12 84250021 84250210 + 2 NA Intergenic Intergenic 662684 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 329-194 chr15 92642028 92642206 + 2 NA intron (NM_207446, intron 1 of 2) L1MB8|LINE|L1 13658 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 171-116 chr6 142267628 142267752 + 2 NA Intergenic L1MC5|LINE|L1 -34229 NM_020455 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 351-242 chr2 155586644 155586871 + 2 NA Intergenic L1PREC2|LINE|L1 668174 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 122-52 chr7 111073324 111073387 + 2 NA intron (NM_032549, intron 3 of 5) L1MC4|LINE|L1 -17651 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 192-14 chr1 217957694 217957841 + 2 NA Intergenic L1MC1|LINE|L1 64867 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 273-323 chr4 54419601 54419835 + 2 NA Intergenic Intergenic 86826 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 346-175 chr16 46474135 46474431 + 2 NA non-coding (NR_026556, exon 16 of 17) non-coding (NR_026556, exon 16 of 17) 94814 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 292-250 chr20 37626443 37626665 + 2 NA Intergenic LTR16A|LTR|ERVL -3435 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 207-37 chr10 60772415 60772575 + 2 NA Intergenic AluJr4|SINE|Alu -5836 NM_001170406 983 Hs.732435 NM_001786 ENSG00000170312 CDK1 CDC2|CDC28A|P34CDC2 cyclin dependent kinase 1 protein-coding 305-572 chrX 78183489 78183646 + 2 NA Intergenic L1PB1|LINE|L1 -43917 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 144-9 chr1 179719955 179720045 + 2 NA Intergenic L1MB7|LINE|L1 -7776 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 373-253 chr3 2886629 2886947 + 2 NA intron (NM_175607, intron 9 of 24) AluSx1|SINE|Alu -5427 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 491-222 chr5 175111977 175112358 + 2 NA Intergenic MER110|LTR|ERV1 -116436 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 297-327 chr4 60684722 60684912 + 2 NA Intergenic Intergenic -237802 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 280-169 chr18 8932926 8933190 + 2 NA Intergenic LTR8B|LTR|ERV1 -169641 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 274-29 chr1 240068690 240068889 + 2 NA Intergenic Intergenic -23094 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 543-10 chr1 100342815 100343273 + 2 NA Intergenic AluSq2|SINE|Alu -1971 NM_001319211 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 259-187 chr2 29579367 29579515 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -104064 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 241-323 chr6 19156343 19156517 + 2 NA intron (NR_110860, intron 3 of 10) intron (NR_110860, intron 3 of 10) 24050 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 184-84 chr2 45832773 45832940 + 2 NA intron (NM_005400, intron 1 of 14) MIRc|SINE|MIR 181181 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 198-112 chr2 3906494 3906657 + 2 NA Intergenic Intergenic 67457 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 321-21 chr1 117577609 117577888 + 2 NA Intergenic Intergenic 28022 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 351-459 chr7 104389533 104389843 + 2 NA intron (NM_199000, intron 1 of 2) L1MB7|LINE|L1 61032 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 373-170 chr18 69750236 69750552 + 2 NA intron (NM_152721, intron 6 of 7) intron (NM_152721, intron 6 of 7) 197479 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 594-154 chr8 130670060 130670518 + 2 NA Intergenic Intergenic -226615 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 563-166 chr6 168770541 168770871 + 2 NA Intergenic HERVL-int|LTR|ERVL 193676 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 288-301 chr4 70477896 70478178 + 2 NA intron (NM_001145006, intron 3 of 3) intron (NM_001145006, intron 3 of 3) 5840 NM_152291 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 303-461 chr8 110929505 110929800 + 2 NA Intergenic Intergenic 97781 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 263-154 chr17 60323454 60323681 + 2 NA intron (NM_032582, intron 2 of 33) L1MB7|LINE|L1 68566 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 319-49 chr10 31590583 31590836 + 2 NA Intergenic L1MB3|LINE|L1 -190954 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 435-105 chr17 65333735 65334155 + 2 NA Intergenic Intergenic -123596 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 253-159 chr17 64072271 64072516 + 2 NA intron (NM_001433, intron 5 of 21) intron (NM_001433, intron 5 of 21) -51759 NM_001099787 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 211-315 chr8 137132303 137132433 + 2 NA Intergenic Intergenic 281220 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 367-474 chr9 34663464 34663674 + 2 NA promoter-TSS (NM_006664) promoter-TSS (NM_006664) -912 NM_006664 10850 Hs.648124 NM_006664 ENSG00000213927 CCL27 ALP|CTACK|CTAK|ESKINE|ILC|PESKY|SCYA27 C-C motif chemokine ligand 27 protein-coding 541-85 chr17 16630498 16630874 + 2 NA intron (NM_020787, intron 5 of 5) L1MEg|LINE|L1 23164 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 357-285 chr3 135295131 135295454 + 2 NA Intergenic L1ME4b|LINE|L1 500032 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 249-411 chr8 71430046 71430227 + 2 NA intron (NM_001370336, intron 2 of 17) intron (NM_001370336, intron 2 of 17) -68067 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 154-78 chr3 187419479 187419600 + 2 NA Intergenic L1PA17|LINE|L1 -27507 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 181-30 chr11 94634548 94634684 + 2 NA intron (NR_135096, intron 4 of 6) L1ME4b|LINE|L1 67248 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 394-47 chr10 88772189 88772522 + 2 NA intron (NM_001102469, intron 6 of 8) L1MA4|LINE|L1 10949 NM_001102469 643418 Hs.632091 NM_001102469 ENSG00000204020 LIPN ARCI8|LI4|LIPL4|bA186O14.3 lipase family member N protein-coding 328-334 chr22 28507150 28507325 + 2 NA intron (NM_001145418, intron 2 of 22) L1PA11|LINE|L1 47368 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 258-59 chr10 109322180 109322363 + 2 NA Intergenic L1MD1|LINE|L1 600975 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 247-156 chr17 54481594 54481743 + 2 NA Intergenic Intergenic -419023 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 229-391 chr8 102750021 102750171 + 2 NA Intergenic Intergenic -56726 NR_149020 401472 NR_149020 GASAL1 GASL1 growth arrest associated lncRNA 1 ncRNA 562-123 chr2 213474338 213474770 + 2 NA intron (NR_047660, intron 8 of 14) HERVL-int|LTR|ERVL 190090 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 242-81 chr12 66562490 66562700 + 2 NA intron (NM_001366722, intron 2 of 24) intron (NM_001366722, intron 2 of 24) 116481 NM_001178074 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 345-310 chr20 45235350 45235655 + 2 NA Intergenic L1M2c|LINE|L1 14129 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 454-337 chr9 81720780 81721167 + 2 NA intron (NR_109772, intron 1 of 3) MER58A|DNA|hAT-Charlie 31260 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 248-244 chr3 73573795 73573990 + 2 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -4377 NM_001303139 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 263-220 chr2 163228007 163228248 + 2 NA Intergenic Intergenic -389360 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 158-74 chr3 49215940 49216043 + 2 NA intron (NM_001135197, intron 2 of 7) intron (NM_001135197, intron 2 of 7) 16493 NM_001135197 339834 Hs.631931 NM_178173 ENSG00000173421 CCDC36 CT74 coiled-coil domain containing 36 protein-coding 144-43 chr2 32846657 32846774 + 2 NA intron (NR_027098, intron 2 of 5) intron (NR_027098, intron 2 of 5) 21282 NR_027098 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 300-285 chr3 102890374 102890535 + 2 NA Intergenic Intergenic 455439 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 252-99 chr13 23234643 23234840 + 2 NA intron (NM_000231, intron 3 of 7) intron (NM_000231, intron 3 of 7) 53820 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 198-74 chr15 80387458 80387632 + 2 NA Intergenic MIRb|SINE|MIR -16837 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 329-545 chr7 81261743 81261929 + 2 NA Intergenic L1MC1|LINE|L1 299983 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 335-149 chr13 114254676 114254889 + 2 NA intron (NM_001318518, intron 12 of 16) MER4B|LTR|ERV1 10277 NR_049839 100847035 NR_049839 ENSG00000264539 MIR548AR - microRNA 548ar ncRNA 314-188 chr15 62061169 62061450 + 2 NA promoter-TSS (NM_017684) promoter-TSS (NM_017684) 806 NR_135690 101928907 Hs.552949 NR_135690 LOC101928907 - uncharacterized LOC101928907 ncRNA 508-207 chr6 46568754 46569141 + 2 NA intron (NM_016593, intron 10 of 11) L1M2|LINE|L1 -76880 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 365-46 chr10 42315535 42315757 + 2 NA Intergenic Intergenic 52399 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 332-19 chr1 108708076 108708350 + 2 NA Intergenic Intergenic -4695 NM_001144937 163479 Hs.258253 NM_173532 ENSG00000143107 FNDC7 - fibronectin type III domain containing 7 protein-coding 544-214 chr7 67682338 67682780 + 2 NA Intergenic Charlie20a|DNA|hAT-Charlie -337694 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 499-241 chr7 39564944 39565351 + 2 NA Intergenic Intergenic -1257 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 343-535 chr8 67523978 67524282 + 2 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 180296 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 491-63 chr13 104057418 104057836 + 2 NA Intergenic L1M4|LINE|L1 632427 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 387-403 chrX 82066107 82066479 + 2 NA Intergenic Intergenic 864191 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 388-132 chr17 17374191 17374390 + 2 NA Intergenic AluJo|SINE|Alu 70917 NM_020201 56953 Hs.513977 NM_020201 ENSG00000205309 NT5M dNT-2|dNT2|mdN 5',3'-nucleotidase, mitochondrial protein-coding 306-480 chr7 88165865 88166131 + 2 NA intron (NM_001324421, intron 24 of 28) intron (NM_001324421, intron 24 of 28) -50662 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 330-37 chr1 191981413 191981590 + 2 NA Intergenic L1MA4A|LINE|L1 -176961 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 319-378 chr4 71831136 71831392 + 2 NA Intergenic Intergenic -25744 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 355-48 chr10 43754740 43754959 + 2 NA Intergenic L1ME4b|LINE|L1 23976 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 501-153 chr3 14779485 14779835 + 2 NA Intergenic L1MB8|LINE|L1 31754 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 230-281 chr4 187071251 187071416 + 2 NA Intergenic Intergenic -130653 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 594-103 chr4 89356970 89357422 + 2 NA Intergenic Intergenic -49396 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 300-149 chr17 2783367 2783569 + 2 NA intron (NM_001330058, intron 1 of 24) L2a|LINE|L2 6710 NM_001330058 23108 Hs.499659 NM_015085 ENSG00000132359 RAP1GAP2 GARNL4|RAP1GA3 RAP1 GTPase activating protein 2 protein-coding 373-129 chr15 54597863 54598186 + 2 NA intron (NM_001329919, intron 29 of 31) L3|LINE|CR1 -458723 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 256-40 chr10 52806030 52806282 + 2 NA Intergenic Intergenic -34456 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 760-10 chr11 79803513 79804077 + 2 NA Intergenic Intergenic -362765 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 249-22 chr1 172634043 172634198 + 2 NA Intergenic MER21C|LTR|ERVL -24888 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 245-158 chr17 55650546 55650784 + 2 NA Intergenic Intergenic 72199 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 216-215 chr3 54482125 54482287 + 2 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 157651 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 328-33 chr1 200055910 200056136 + 2 NA intron (NM_205860, intron 5 of 7) intron (NM_205860, intron 5 of 7) 13198 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 267-216 chr2 190199195 190199388 + 2 NA intron (NM_032321, intron 1 of 1) MER58A|DNA|hAT-Charlie 18428 NM_032321 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 279-115 chr15 65174943 65175131 + 2 NA intron (NM_006660, intron 3 of 13) intron (NM_006660, intron 3 of 13) 10305 NM_006660 10845 Hs.113823 NM_006660 ENSG00000166855 CLPX EPP2 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 354-184 chr18 40224656 40224911 + 2 NA Intergenic L2a|LINE|L2 158497 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 302-477 chr8 138545877 138546114 + 2 NA Intergenic Intergenic -48265 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 478-80 chr14 63580324 63580684 + 2 NA Intergenic Intergenic -37109 NM_001354926 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 272-466 chr8 144944788 144945008 + 2 NA intron (NM_006958, intron 2 of 2) L1MB5|LINE|L1 5982 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 376-203 chr2 194510208 194510537 + 2 NA Intergenic Intergenic 166103 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 286-68 chr11 50450942 50451122 + 2 NA Intergenic ALR/Alpha|Satellite|centr 41885 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 310-357 chr4 28318645 28318826 + 2 NA Intergenic L1MEc|LINE|L1 -500847 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 211-93 chr14 104419910 104420050 + 2 NA Intergenic L1MEb|LINE|L1 -159784 NM_001286399 400258 Hs.153827 NM_001008404 ENSG00000184601 C14orf180 C14orf77|NRAC chromosome 14 open reading frame 180 protein-coding 224-48 chr11 79211151 79211310 + 2 NA intron (NM_001098816, intron 3 of 33) L2c|LINE|L2 190879 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 245-107 chr12 118819422 118819596 + 2 NA intron (NR_134997, intron 2 of 2) intron (NR_134997, intron 2 of 2) 14027 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 345-559 chr9 105050844 105051165 + 2 NA Intergenic L2c|LINE|L2 -122849 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 294-117 chr14 58993981 58994208 + 2 NA intron (NR_110547, intron 4 of 5) L1M4a1|LINE|L1 165806 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 304-192 chr17 51503578 51503770 + 2 NA Intergenic L1MEd|LINE|L1 68247 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 284-457 chrX 85464175 85464354 + 2 NA Intergenic L1MA2|LINE|L1 -84599 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 146-45 chr2 166202955 166203073 + 2 NA intron (NM_001365536, intron 26 of 26) L1M2|LINE|L1 -53853 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 348-221 chr2 53291759 53291951 + 2 NA Intergenic Intergenic -475928 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 357-198 chr2 52339729 52340067 + 2 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -30750 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 309-270 chr2 137315589 137315865 + 2 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 550182 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 288-227 chr20 39513080 39513310 + 2 NA Intergenic L1MB3|LINE|L1 -288447 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 366-344 chr5 67635348 67635675 + 2 NA intron (NR_147169, intron 1 of 2) MLT1L|LTR|ERVL-MaLR 11278 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 298-443 chr7 108351892 108352145 + 2 NA intron (NM_001371131, intron 2 of 33) LFSINE_Vert|SINE|tRNA -23492 NM_001371176 255-404 chr7 141094152 141094305 + 2 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 20164 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 282-242 chr2 191622542 191622761 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -55421 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 175-138 chr5 168845621 168845743 + 2 NA intron (NM_003062, intron 5 of 35) intron (NM_003062, intron 5 of 35) -77427 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 154-19 chr11 107085152 107085264 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie -66732 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 797-12 chr11 100588256 100588680 + 2 NA Intergenic Intergenic -98820 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 368-116 chr12 108378589 108378875 + 2 NA Intergenic L1PA16|LINE|L1 -39421 NM_004072 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 390-39 chr10 65961539 65961751 + 2 NA intron (NM_001127384, intron 17 of 17) MLT1J|LTR|ERVL-MaLR 390220 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 211-92 chr14 101045208 101045350 + 2 NA promoter-TSS (NR_029873) promoter-TSS (NR_029873) 122 NR_104192 378881 Hs.451159 NR_104192 ENSG00000258861 MIR381HG C14orf89|NCRNA00225 MIR381 host gene ncRNA 275-174 chr2 8607928 8608084 + 2 NA Intergenic Intergenic -24214 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 339-143 chr13 73440280 73440480 + 2 NA Intergenic MER61A|LTR|ERV1 -123864 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 291-108 chr12 125539632 125539805 + 2 NA intron (NM_052907, intron 4 of 8) L1M5|LINE|L1 -82734 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 179-58 chr20 58541625 58541782 + 2 NA intron (NR_034147, intron 5 of 6) intron (NR_034147, intron 5 of 6) -26304 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 200-161 chr21 15810512 15810699 + 2 NA intron (NM_001283042, intron 8 of 24) intron (NM_001283042, intron 8 of 24) 80623 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 154-22 chr12 28313149 28313294 + 2 NA intron (NM_001352084, intron 6 of 11) intron (NM_001352084, intron 6 of 11) -122483 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 268-418 chr8 127560974 127561183 + 2 NA Intergenic MIRc|SINE|MIR -78939 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 640-48 chr16 78552456 78552855 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 453001 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 462-214 chr4 125512937 125513277 + 2 NA Intergenic Intergenic 5848 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 314-87 chr11 15813058 15813300 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 156442 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 175-58 chr16 49222000 49222119 + 2 NA Intergenic Intergenic 59779 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 197-85 chr19 36704323 36704475 + 2 NA intron (NM_001363651, intron 1 of 4) AluSq|SINE|Alu 718 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 412-207 chr3 31080504 31080861 + 2 NA Intergenic HAL1|LINE|L1 81105 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 233-11 chr1 147825925 147826075 + 2 NA Intergenic Intergenic -52638 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 439-199 chr4 12164509 12164877 + 2 NA Intergenic Intergenic -58758 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 407-181 chr22 37171545 37171829 + 2 NA intron (NM_001346222, intron 1 of 9) intron (NM_001346222, intron 1 of 9) 3369 NM_001346223 3560 Hs.474787 NM_000878 ENSG00000100385 IL2RB CD122|IL15RB|P70-75 interleukin 2 receptor subunit beta protein-coding 390-150 chr17 72002212 72002565 + 2 NA Intergenic Intergenic 23591 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 260-287 chr3 140561317 140561531 + 2 NA intron (NM_022131, intron 12 of 16) intron (NM_022131, intron 12 of 16) -52635 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 563-51 chr14 51831445 51831847 + 2 NA Intergenic Intergenic -28966 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 311-61 chr10 83037343 83037647 + 2 NA Intergenic Intergenic 639594 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 307-52 chr10 48924456 48924750 + 2 NA intron (NM_020945, intron 47 of 61) intron (NM_020945, intron 47 of 61) -10368 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 348-209 chr19 28666426 28666740 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 59895 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 205-292 chr9 28131825 28131964 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -558028 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 141-87 chr9 10764734 10764827 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 151574 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 313-234 chr2 16371179 16371345 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 294572 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 390-249 chr3 111822949 111823243 + 2 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -36084 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 281-338 chr4 179378137 179378366 + 2 NA Intergenic Intergenic -1470315 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 223-255 chr4 106377517 106377681 + 2 NA Intergenic Intergenic -10164 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 297-317 chr4 30775377 30775537 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 55088 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 323-499 chr7 54287615 54287793 + 2 NA Intergenic L1M3c|LINE|L1 -42993 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 468-318 chr8 110567779 110568139 + 2 NA Intergenic Intergenic 459474 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 456-245 chr5 26377424 26377753 + 2 NA Intergenic Intergenic 660998 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 292-125 chr13 76487375 76487604 + 2 NA Intergenic Intergenic 398916 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 394-2 chr1 45771635 45771895 + 2 NA Intergenic L1MEc|LINE|L1 -20952 NM_001145349 3652 Hs.744252 NM_005897 ENSG00000197429 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 278-271 chr3 54758314 54758460 + 2 NA intron (NM_018398, intron 12 of 37) intron (NM_018398, intron 12 of 37) -118530 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 291-206 chr2 28154767 28155010 + 2 NA intron (NR_120504, intron 1 of 2) intron (NR_120504, intron 1 of 2) 52073 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 530-122 chr2 54775019 54775532 + 2 NA intron (NM_001039753, intron 1 of 40) L2a|LINE|L2 50263 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 331-100 chr11 98658487 98658658 + 2 NA Intergenic Intergenic -362377 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 172-111 chr6 56615339 56615499 + 2 NA 3' UTR (NM_001723, exon 24 of 24) 3' UTR (NM_001723, exon 24 of 24) 27470 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 269-4 chr1 40109265 40109514 + 2 NA Intergenic L2c|LINE|L2 -11919 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 386-252 chr4 429038 429275 + 2 NA intron (NR_002451, intron 2 of 2) L1MB2|LINE|L1 45053 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 289-291 chr3 25498947 25499128 + 2 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 40727 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 241-6 chr1 51180628 51180795 + 2 NA Intergenic L1M5|LINE|L1 54385 NR_147076 105378716 NR_147076 ENSG00000203356 LINC01562 - long intergenic non-protein coding RNA 1562 ncRNA 435-217 chr6 40224431 40224753 + 2 NA Intergenic HAL1|LINE|L1 131414 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 261-335 chr6 63810908 63811105 + 2 NA intron (NR_157848, intron 1 of 1) L2a|LINE|L2 4170 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 380-138 chr15 86024949 86025258 + 2 NA Intergenic Intergenic -54517 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 625-21 chr11 81981268 81981731 + 2 NA intron (NR_120571, intron 6 of 7) L1MC3|LINE|L1 -90663 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 177-20 chr10 59560378 59560527 + 2 NA Intergenic Intergenic 149439 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 534-171 chr3 194899252 194899718 + 2 NA Intergenic L1PB2|LINE|L1 -130776 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 265-189 chr2 106009263 106009514 + 2 NA Intergenic MER51A|LTR|ERV1 -56300 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 329-69 chr10 87625785 87626025 + 2 NA Intergenic MER57A-int|LTR|ERV1 -33973 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 233-389 chr8 134766398 134766554 + 2 NA Intergenic L1MC5|LINE|L1 34131 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 286-313 chr4 56285799 56286030 + 2 NA intron (NM_020722, intron 3 of 10) (AGAGGTA)n|Simple_repeat|Simple_repeat 101577 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 749-64 chr22 23056330 23056912 + 2 NA Intergenic L1M4|LINE|L1 -13898 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 290-366 chr5 123683643 123683878 + 2 NA Intergenic L1MD1|LINE|L1 138343 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 585-80 chr2 149952752 149953141 + 2 NA Intergenic HAL1b|LINE|L1 -93755 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 284-404 chr8 82109354 82109626 + 2 NA Intergenic Intergenic -267204 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 343-279 chr2 162938910 162939204 + 2 NA Intergenic Intergenic -100290 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 366-122 chr14 39893468 39893651 + 2 NA Intergenic MLT2A1|LTR|ERVL -461059 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 287-372 chr7 7308737 7308909 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 53669 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 294-454 chr8 30766686 30766876 + 2 NA 3' UTR (NM_001282189, exon 8 of 8) 3' UTR (NM_001282189, exon 8 of 8) 22616 NM_001282189 7993 Hs.153678 NM_005671 ENSG00000104691 UBXN8 D8S2298E|REP8|UBXD6 UBX domain protein 8 protein-coding 368-9 chr1 59398932 59399210 + 2 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) 89039 NM_001350790 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 246-406 chr8 91890741 91890923 + 2 NA Intergenic L1M5|LINE|L1 126848 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 318-59 chr10 41738392 41738613 + 2 NA Intergenic ALR/Alpha|Satellite|centr 629543 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 328-119 chr12 126847452 126847734 + 2 NA Intergenic MIRb|SINE|MIR 27097 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 760-45 chr3 13178021 13178644 + 2 NA Intergenic L2a|LINE|L2 -104903 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 337-591 chr9 120368685 120368864 + 2 NA Intergenic HAL1ME|LINE|L1 -123724 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 312-391 chr4 146593579 146593882 + 2 NA Intergenic L1MB4|LINE|L1 -45163 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 433-158 chr21 17873635 17874061 + 2 NA intron (NR_024354, intron 1 of 2) AluJb|SINE|Alu 11760 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 359-7 chr1 54438776 54439052 + 2 NA Intergenic Intergenic -32520 NM_018070 23648 Hs.476706 NM_018070 ENSG00000157216 SSBP3 CSDP|SSDP|SSDP1 single stranded DNA binding protein 3 protein-coding 268-155 chr17 68732931 68733133 + 2 NA Intergenic Intergenic 104878 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 383-125 chr15 33747973 33748306 + 2 NA exon (NM_001036, exon 54 of 104) exon (NM_001036, exon 54 of 104) -220358 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 225-287 chr5 111771892 111772064 + 2 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -13760 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 343-366 chr3 174907533 174907752 + 2 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 48308 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 396-173 chr2 120584228 120584610 + 2 NA Intergenic L1M4|LINE|L1 -118070 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 394-182 chr2 147801283 147801557 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -43097 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 393-91 chr14 42386042 42386417 + 2 NA Intergenic Intergenic 779373 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 507-247 chr8 101764423 101764797 + 2 NA intron (NM_001040625, intron 4 of 6) L2a|LINE|L2 26359 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 237-189 chr2 114918762 114918985 + 2 NA intron (NM_001321910, intron 2 of 26) L1PA15|LINE|L1 -85325 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 448-160 chr3 68159796 68160124 + 2 NA intron (NM_001252216, intron 2 of 4) LTR36|LTR|ERV1 155713 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 449-231 chr6 38493085 38493425 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) 11659 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 338-212 chr17 34701334 34701529 + 2 NA Intergenic Intergenic 120682 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 357-291 chr3 174073470 174073741 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -152809 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 198-220 chr6 146338576 146338731 + 2 NA intron (NM_001278065, intron 4 of 9) intron (NM_001278065, intron 4 of 9) -205180 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 344-531 chrX 57679871 57680115 + 2 NA 3' UTR (NM_001319967, exon 1 of 1) 3' UTR (NM_001319967, exon 1 of 1) 267 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 341-275 chr2 183830261 183830440 + 2 NA Intergenic Intergenic -548625 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 378-426 chr8 26096828 26097070 + 2 NA Intergenic AluJr|SINE|Alu -51536 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 543-102 chr17 72141410 72141937 + 2 NA Intergenic Intergenic 20653 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 425-235 chr5 87093506 87093861 + 2 NA Intergenic Intergenic 21271 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 318-135 chr12 22083434 22083656 + 2 NA Intergenic Intergenic 37327 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 333-114 chr12 43466619 43466817 + 2 NA exon (NM_025003, exon 9 of 39) exon (NM_025003, exon 9 of 39) 85485 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 390-259 chr4 21018094 21018445 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -34260 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 358-385 chr5 121219219 121219439 + 2 NA Intergenic L2a|LINE|L2 -103221 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 380-215 chr20 13504530 13504739 + 2 NA intron (NR_136631, intron 10 of 13) L1MA9|LINE|L1 134298 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 444-125 chr2 158219889 158220129 + 2 NA intron (NR_038850, intron 4 of 4) LTR41B|LTR|ERVL 53359 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 275-73 chr11 116187134 116187339 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -427036 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 620-10 chr1 239452131 239452687 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 65841 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 292-405 chr7 36800128 36800327 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -75678 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 513-202 chr4 54163310 54163661 + 2 NA Intergenic L1MB3|LINE|L1 63322 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 559-85 chr19 29794553 29794928 + 2 NA Intergenic Intergenic -17251 NM_001322259 898 Hs.244723 NM_001238 ENSG00000105173 CCNE1 CCNE|pCCNE1 cyclin E1 protein-coding 145-74 chr6 130575996 130576096 + 2 NA Intergenic Intergenic 138929 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 352-259 chr2 179922982 179923327 + 2 NA Intergenic L1ME2|LINE|L1 -61542 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 293-159 chr17 79101774 79101968 + 2 NA intron (NM_001082575, intron 8 of 14) intron (NM_001082575, intron 8 of 14) 26934 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 403-122 chr16 64024884 64025149 + 2 NA Intergenic Intergenic 1097047 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 225-153 chr2 57684082 57684249 + 2 NA Intergenic Intergenic -223486 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 126-45 chr4 83628145 83628227 + 2 NA Intergenic Intergenic 92078 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 344-475 chr8 9959037 9959333 + 2 NA Intergenic MER5C|DNA|hAT-Charlie -55713 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 294 chr1 34058981 34059213 + 2 NA intron (NM_052896, intron 2 of 69) intron (NM_052896, intron 2 of 69) 106177 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 271-475 chr9 29757631 29757847 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -544138 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 381-142 chr17 62182431 62182694 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 93093 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 337-252 chr2 59121985 59122212 + 2 NA Intergenic MER20|DNA|hAT-Charlie -95610 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 335-29 chr1 201064343 201064595 + 2 NA intron (NM_000069, intron 22 of 43) intron (NM_000069, intron 22 of 43) -40755 NM_001252103 23046 Hs.169182 NM_017596 ENSG00000116852 KIF21B - kinesin family member 21B protein-coding 233-54 chr11 35973223 35973415 + 2 NA intron (NM_001304264, intron 1 of 5) L1MC4a|LINE|L1 29257 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 304-181 chr16 54303433 54303688 + 2 NA Intergenic L1ME3A|LINE|L1 -16773 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 144-57 chr3 53963196 53963300 + 2 NA Intergenic Intergenic -71389 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 434-31 chr10 13044176 13044513 + 2 NA intron (NM_001282658, intron 5 of 6) L1PA16|LINE|L1 -42631 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 388-245 chr4 33595946 33596198 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 443821 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 317-454 chr7 65959459 65959702 + 2 NA TTS (NM_173517) TTS (NM_173517) 22633 NM_001293105 2990 Hs.255230 NM_000181 ENSG00000169919 GUSB BG|MPS7 glucuronidase beta protein-coding 432-293 chr8 139181681 139181957 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -267778 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 465-93 chr16 13383670 13384076 + 2 NA Intergenic AluSz|SINE|Alu 482275 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 159-51 chr20 57952257 57952378 + 2 NA Intergenic (ATCC)n|Simple_repeat|Simple_repeat -51587 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 571-162 chr8 24630616 24631164 + 2 NA Intergenic MIRc|SINE|MIR -82272 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 499-67 chr14 41997076 41997519 + 2 NA Intergenic Intergenic 390441 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 456-157 chr2 74737870 74738144 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 83760 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 414-337 chr8 130877498 130877744 + 2 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 163288 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 698-62 chr3 181022820 181023371 + 2 NA Intergenic L1MB7|LINE|L1 -33321 NR_046073 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 304-511 chr8 78770357 78770641 + 2 NA intron (NM_001199886, intron 2 of 4) intron (NM_001199886, intron 2 of 4) 34964 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 266-185 chr2 101977037 101977242 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -6326 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 687-22 chr11 23930938 23931528 + 2 NA Intergenic Intergenic -512043 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 233-29 chr10 18521133 18521356 + 2 NA intron (NM_201593, intron 9 of 13) intron (NM_201593, intron 9 of 13) 120669 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 593-20 chr10 123223221 123223569 + 2 NA Intergenic AluY|SINE|Alu 68993 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 349-108 chr11 115631832 115632042 + 2 NA Intergenic Intergenic 102825 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 348-495 chr7 52999341 52999637 + 2 NA Intergenic L1MC4|LINE|L1 -36144 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 188-169 chr5 112166922 112167095 + 2 NA intron (NM_022140, intron 22 of 22) intron (NM_022140, intron 22 of 22) 5523 NR_002922 654322 Hs.689709 NR_002922 ENSG00000238363 SNORA13 ACA13 small nucleolar RNA, H/ACA box 13 snoRNA 399-307 chr8 85029192 85029548 + 2 NA Intergenic Intergenic -77868 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 347-78 chr11 81549080 81549272 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 341660 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 343-444 chr5 114538590 114538870 + 2 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) -37311 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 282-322 chr4 429912 430129 + 2 NA intron (NR_002451, intron 2 of 2) L1MA6|LINE|L1 44189 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 428-232 chr5 53402406 53402741 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -78056 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 491-246 chr7 52086792 52087204 + 2 NA Intergenic MIRb|SINE|MIR -693742 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 309-420 chr5 9421145 9421407 + 2 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -90057 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 279-190 chr2 113070484 113070670 + 2 NA intron (NM_173161, intron 1 of 4) intron (NM_173161, intron 1 of 4) -1741 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 324-155 chr14 48056820 48057005 + 2 NA Intergenic L1MA7|LINE|L1 -261898 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 349-352 chr3 181008111 181008360 + 2 NA Intergenic AluSx1|SINE|Alu -18461 NR_046073 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 428-183 chr3 84704659 84705014 + 2 NA intron (NR_033860, intron 11 of 20) L1M4a2|LINE|L1 164739 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 259-107 chr14 28568549 28568725 + 2 NA Intergenic Intergenic 196682 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 203-57 chr13 106482786 106482958 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 52168 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 296-14 chr1 118871314 118871510 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 116931 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 360-355 chr5 34983746 34984090 + 2 NA Intergenic L1MB4|LINE|L1 54325 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 429-53 chr11 55667128 55667400 + 2 NA Intergenic Intergenic 2097 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 319-289 chr20 33265458 33265734 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -17618 NM_033197 92747 Hs.65551 NM_033197 ENSG00000125999 BPIFB1 C20orf114|LPLUNC1 BPI fold containing family B member 1 protein-coding 247-333 chr5 105485999 105486238 + 2 NA Intergenic Intergenic 386644 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 458-123 chr2 36456725 36457170 + 2 NA intron (NM_016441, intron 4 of 16) intron (NM_016441, intron 4 of 16) 101169 NM_016441 51232 Hs.699247 NM_016441 ENSG00000150938 CRIM1 CRIM-1|S52 cysteine rich transmembrane BMP regulator 1 protein-coding 432-184 chr3 114680896 114681301 + 2 NA intron (NM_001348803, intron 6 of 13) MIRb|SINE|MIR -56153 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 483-31 chr10 100064154 100064492 + 2 NA intron (NM_001308, intron 4 of 8) (ATTAAT)n|Simple_repeat|Simple_repeat 17546 NM_001308 1369 Hs.2246 NM_001308 ENSG00000120054 CPN1 CPN|SCPN carboxypeptidase N subunit 1 protein-coding 245-61 chr10 122387620 122387777 + 2 NA intron (NM_001195608, intron 1 of 13) MLT1F|LTR|ERVL-MaLR 1629 NM_001195608 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 315-80 chr11 29276908 29277155 + 2 NA Intergenic Intergenic -317382 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 266-250 chr3 73170666 73170890 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 109119 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 230-352 chr7 51880045 51880195 + 2 NA Intergenic Intergenic -486864 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 296-149 chr14 89512132 89512350 + 2 NA intron (NM_001085471, intron 1 of 6) MER34A|LTR|ERV1 -63975 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 378-45 chr1 240848599 240848915 + 2 NA intron (NM_001350116, intron 9 of 16) intron (NM_001350116, intron 9 of 16) -236602 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 290-423 chr7 53671167 53671350 + 2 NA intron (NR_038371, intron 5 of 5) L1MB4|LINE|L1 140673 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 294-86 chr12 64205091 64205300 + 2 NA intron (NM_152440, intron 2 of 2) intron (NM_152440, intron 2 of 2) 17101 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 384-390 chr8 141281258 141281602 + 2 NA Intergenic MIRb|SINE|MIR -26801 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 272-223 chr2 180214222 180214461 + 2 NA Intergenic Intergenic -207044 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 354-72 chr11 7502882 7503145 + 2 NA intron (NM_198474, intron 2 of 2) L2a|LINE|L2 -10752 NR_147792 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 531-55 chr13 103691842 103692109 + 2 NA Intergenic Intergenic 266775 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 303-113 chr13 103966273 103966550 + 2 NA Intergenic Intergenic 541211 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 244-332 chr6 166815700 166815868 + 2 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 46741 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 375-20 chr1 191783293 191783510 + 2 NA Intergenic LTR53-int|LTR|ERVL -375061 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 306-5 chr1 37180735 37180908 + 2 NA Intergenic AluSx1|SINE|Alu 19258 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 255-253 chr3 30616679 30616852 + 2 NA intron (NM_003242, intron 1 of 6) intron (NM_003242, intron 1 of 6) 10164 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 271-178 chr18 37103273 37103468 + 2 NA intron (NR_136303, intron 8 of 13) L1MA4A|LINE|L1 -171090 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 327-467 chr7 88669516 88669703 + 2 NA Intergenic AluY|SINE|Alu -90091 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 270-396 chr8 108562600 108562821 + 2 NA Intergenic Intergenic 119086 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 226-241 chr3 181017234 181017452 + 2 NA Intergenic AluSx4|SINE|Alu -27569 NR_046073 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 332-494 chr7 82166661 82166891 + 2 NA intron (NM_000722, intron 4 of 38) intron (NM_000722, intron 4 of 38) 157599 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 693-17 chr11 83661689 83662311 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) 20425 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 363-399 chr6 164253508 164253850 + 2 NA Intergenic LTR86A2|LTR|ERVL 568384 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 238-362 chr7 71039904 71040101 + 2 NA Intergenic L1MB3|LINE|L1 -92142 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 223-204 chr3 40204421 40204575 + 2 NA intron (NM_001284424, intron 10 of 15) LTR81AB|LTR|Gypsy 104487 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 344-536 chrX 137207356 137207569 + 2 NA Intergenic Intergenic -175788 NM_054021 83550 Hs.350569 NM_054021 ENSG00000165370 GPR101 GPCR6|PAGH2|PITA2 G protein-coupled receptor 101 protein-coding 245-161 chr17 70729539 70729769 + 2 NA Intergenic Intergenic 472525 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 263-136 chr16 60873338 60873580 + 2 NA Intergenic Intergenic 182307 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 466-104 chr17 74651571 74651884 + 2 NA Intergenic AluSg|SINE|Alu -19404 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 218-262 chr5 34823102 34823244 + 2 NA exon (NM_001145522, exon 14 of 17) exon (NM_001145522, exon 14 of 17) -15991 NM_144725 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 257-238 chr20 45658271 45658513 + 2 NA intron (NM_147197, intron 2 of 4) L1PA3|LINE|L1 11847 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 522-266 chr9 12148680 12149029 + 2 NA Intergenic L1ME2|LINE|L1 -544531 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 379-42 chr10 66568470 66568832 + 2 NA intron (NM_001127384, intron 10 of 17) MIRc|SINE|MIR -357385 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 711-5 chr1 187759556 187760195 + 2 NA Intergenic Intergenic 316247 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 382-62 chr11 74675789 74676026 + 2 NA Intergenic Intergenic 35460 NM_001304417 25884 Hs.432379 NM_015424 ENSG00000054938 CHRDL2 BNF1|CHL2 chordin like 2 protein-coding 442-282 chr8 25068276 25068669 + 2 NA Intergenic Intergenic -111603 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 214-268 chr5 117925985 117926178 + 2 NA intron (NR_104997, intron 2 of 2) L1MEd|LINE|L1 195720 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 390-347 chr7 21184894 21185187 + 2 NA Intergenic Intergenic -243043 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 204-98 chr15 36790357 36790546 + 2 NA intron (NM_032499, intron 11 of 11) L1MA4A|LINE|L1 28055 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 278-210 chr2 56694608 56694793 + 2 NA Intergenic L1ME1|LINE|L1 -508930 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 169-152 chr9 96732198 96732352 + 2 NA Intergenic L1ME1|LINE|L1 6454 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 338-360 chr3 183527066 183527301 + 2 NA intron (NM_130446, intron 2 of 6) intron (NM_130446, intron 2 of 6) -21552 NR_046687 100874019 NR_046687 ENSG00000242522 KLHL6-AS1 - KLHL6 antisense RNA 1 ncRNA 281-155 chr17 5089125 5089383 + 2 NA intron (NM_153018, intron 1 of 1) MLT1J|LTR|ERVL-MaLR 10787 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 238-253 chr4 2652928 2653127 + 2 NA intron (NM_001256668, intron 5 of 19) intron (NM_001256668, intron 5 of 19) 27595 NM_003704 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 374-387 chr8 84688815 84689133 + 2 NA intron (NM_001354308, intron 3 of 9) L1MA9|LINE|L1 -16953 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 210-75 chr14 71018792 71018966 + 2 NA intron (NM_014982, intron 11 of 35) intron (NM_014982, intron 11 of 35) 111420 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 459-194 chr3 113237154 113237505 + 2 NA intron (NM_001301861, intron 2 of 19) intron (NM_001301861, intron 2 of 19) 25213 NM_001301861 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 288-204 chr2 114453540 114453705 + 2 NA intron (NM_001321910, intron 1 of 26) intron (NM_001321910, intron 1 of 26) -7955 NM_001321911 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 609-55 chr2 55747400 55747821 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -53766 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 325-559 chr8 135244446 135244721 + 2 NA intron (NR_120396, intron 1 of 4) L1ME4b|LINE|L1 10452 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 491-244 chr7 37402857 37403250 + 2 NA intron (NM_001206480, intron 1 of 21) L1MC2|LINE|L1 45899 NM_014800 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 348-238 chr2 139947025 139947238 + 2 NA Intergenic LTR16A|LTR|ERVL 639554 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 190-139 chr4 180462498 180462669 + 2 NA Intergenic Intergenic 696566 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 194-204 chr8 19345374 19345509 + 2 NA intron (NM_001363110, intron 4 of 8) intron (NM_001363110, intron 4 of 8) 31465 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 448-147 chr22 34913680 34914088 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 84032 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 500-12 chr1 188332007 188332465 + 2 NA Intergenic L1MA1|LINE|L1 888608 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 278-297 chr4 7581176 7581372 + 2 NA intron (NM_020777, intron 3 of 26) L1MC5|LINE|L1 121246 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 375-330 chr5 110814182 110814539 + 2 NA Intergenic L1MD2|LINE|L1 75353 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 332-481 chr7 41102023 41102339 + 2 NA intron (NR_110832, intron 1 of 5) Tigger3|DNA|TcMar-Tigger 577 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 511-122 chr2 104237723 104238032 + 2 NA Intergenic Intergenic 170455 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 253-367 chr6 152167698 152167922 + 2 NA intron (NM_182961, intron 130 of 145) intron (NM_182961, intron 130 of 145) 477 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 313-539 chr8 127511361 127511567 + 2 NA Intergenic MIRc|SINE|MIR -29325 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 200-184 chr3 178125425 178125535 + 2 NA Intergenic Intergenic -293721 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 343-431 chr5 71765739 71766049 + 2 NA Intergenic LTR16A2|LTR|ERVL 46619 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 236-284 chr5 40622381 40622560 + 2 NA Intergenic Intergenic -57445 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 152-89 chr7 126171369 126171474 + 2 NA Intergenic Intergenic 886763 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 200-107 chr17 71914602 71914791 + 2 NA Intergenic Intergenic 111283 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 359-460 chr8 24672575 24672862 + 2 NA Intergenic Intergenic -124100 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 398-339 chr7 145401192 145401517 + 2 NA Intergenic Intergenic -565301 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 244-312 chr5 162170000 162170188 + 2 NA Intergenic L1PA11|LINE|L1 102452 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 225-137 chr18 66531711 66531894 + 2 NA intron (NM_001271028, intron 8 of 9) MIR|SINE|MIR 72288 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 130-27 chr16 31878907 31879017 + 2 NA intron (NM_001265588, intron 2 of 4) LTR70|LTR|ERV1 5155 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 314-544 chr7 104698248 104698546 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 105695 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 284-419 chr8 128451152 128451322 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 113442 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 542-215 chr8 46396110 46396479 + 2 NA Intergenic ALR/Alpha|Satellite|centr 221349 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 265-11 chr1 80278440 80278609 + 2 NA Intergenic Intergenic -257231 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 298-402 chr6 74369337 74369523 + 2 NA intron (NR_110856, intron 2 of 3) Tigger3b|DNA|TcMar-Tigger 299979 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 294-424 chr6 156106585 156106765 + 2 NA Intergenic Intergenic 159878 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 399-172 chr2 197739166 197739463 + 2 NA intron (NM_033030, intron 10 of 10) AluJr4|SINE|Alu 33945 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 571-85 chr2 159560618 159561140 + 2 NA intron (NM_001329857, intron 1 of 36) intron (NM_001329857, intron 1 of 36) -54415 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 463-73 chr12 133151004 133151265 + 2 NA exon (NM_015394, exon 3 of 5) exon (NM_015394, exon 3 of 5) 20507 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 323-535 chr8 55306462 55306769 + 2 NA intron (NM_052898, intron 1 of 2) THE1B|LTR|ERVL-MaLR 148706 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 379-198 chr21 14793215 14793534 + 2 NA Intergenic Intergenic 125294 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 309-295 chr20 8892946 8893200 + 2 NA Intergenic Intergenic 61888 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 491-138 chr2 224756571 224756972 + 2 NA Intergenic Intergenic -171374 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 465-312 chr9 16096717 16097109 + 2 NA Intergenic LTR33|LTR|ERVL 156194 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 246-83 chr12 1888634 1888866 + 2 NA intron (NM_172364, intron 6 of 37).2 L1MEd|LINE|L1 29902 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 238-271 chr4 72471290 72471445 + 2 NA intron (NM_014243, intron 3 of 21) Charlie1a|DNA|hAT-Charlie 97854 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 260-142 chr15 39204535 39204786 + 2 NA Intergenic Intergenic -46009 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 128-16 chr13 95791558 95791667 + 2 NA 3' UTR (NM_006260, exon 12 of 12) 3' UTR (NM_006260, exon 12 of 12) 114473 NM_006260 5611 Hs.59214 NM_006260 ENSG00000102580 DNAJC3 ACPHD|ERdj6|HP58|P58|P58IPK|PRKRI DnaJ heat shock protein family (Hsp40) member C3 protein-coding 415-80 chr15 47568504 47568865 + 2 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -148821 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 329-129 chr12 92931776 92932035 + 2 NA Intergenic L2a|LINE|L2 -2610 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 283-338 chr4 158645349 158645553 + 2 NA intron (NR_045581, intron 15 of 17) intron (NR_045581, intron 15 of 17) 26436 NM_001008393 201725 Hs.380920 NM_001008393 ENSG00000205208 C4orf46 RCDG1 chromosome 4 open reading frame 46 protein-coding 225-168 chr2 160744733 160744915 + 2 NA Intergenic Intergenic -251017 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 314-597 chr9 13253867 13254092 + 2 NA intron (NM_001330637, intron 1 of 46) MIR|SINE|MIR 25585 NM_001261406 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 447-71 chr14 47428120 47428501 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -85064 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 228-84 chr13 76189391 76189557 + 2 NA Intergenic Intergenic -254342 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 289-222 chr2 68603515 68603662 + 2 NA Intergenic L1MB2|LINE|L1 -40000 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 164-90 chr4 107969211 107969366 + 2 NA Intergenic L1MD3|LINE|L1 -20426 NM_001184705 3033 Hs.438289 NM_005327 ENSG00000138796 HADH HAD|HADH1|HADHSC|HCDH|HHF4|MSCHAD|SCHAD hydroxyacyl-CoA dehydrogenase protein-coding 331-202 chr17 32706131 32706459 + 2 NA intron (NM_015194, intron 16 of 21) AluSz6|SINE|Alu 170829 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 418-98 chr18 55945676 55945986 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 -25632 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 377-134 chr15 66331457 66331689 + 2 NA intron (NM_001323944, intron 14 of 16) intron (NM_001323944, intron 14 of 16) 15769 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 248-37 chr10 53396470 53396686 + 2 NA Intergenic Intergenic -624878 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 386-54 chr11 63627667 63627911 + 2 NA 3' UTR (NM_001290048, exon 13 of 13) 3' UTR (NM_001290048, exon 13 of 13) -13320 NM_001128203 11145 Hs.502775 NM_007069 ENSG00000176485 PLAAT3 AdPLA|H-REV107|H-REV107-1|HRASLS3|HREV107|HREV107-1|HREV107-3|HRSL3|PLA2G16|PLAAT-3 phospholipase A and acyltransferase 3 protein-coding 405-238 chr4 189191975 189192341 + 2 NA Intergenic Intergenic 415501 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 280-314 chr5 23706750 23706987 + 2 NA Intergenic MER57A-int|LTR|ERV1 199213 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 376-343 chr6 37469729 37470088 + 2 NA intron (NM_015050, intron 13 of 23) L1MEf|LINE|L1 29985 NM_138493 154467 Hs.284207 NM_138493 ENSG00000198937 CCDC167 C6orf129|HSPC265 coiled-coil domain containing 167 protein-coding 513-49 chr11 92049048 92049524 + 2 NA Intergenic Intergenic -175748 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 650-23 chr12 97126425 97126876 + 2 NA Intergenic MIR|SINE|MIR 219184 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 321-81 chr10 120352106 120352346 + 2 NA Intergenic AluSx|SINE|Alu 2997 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 377-72 chr11 82631810 82632052 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 101933 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 556-242 chr9 88834886 88835385 + 2 NA Intergenic HAL1|LINE|L1 -89230 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 564-42 chr12 56870886 56871194 + 2 NA Intergenic MER101-int|LTR|ERV1 63368 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 393-88 chr14 24552738 24553080 + 2 NA Intergenic L1MA1|LINE|L1 23341 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 227-134 chr17 10546289 10546428 + 2 NA intron (NM_001100112, intron 4 of 39) intron (NM_001100112, intron 4 of 39) 3265 NM_001100112 4620 Hs.667534 NM_017534 ENSG00000125414 MYH2 IBM3|MYH2A|MYHSA2|MYHas8|MYPOP|MyHC-2A|MyHC-IIa myosin heavy chain 2 protein-coding 514-226 chr5 85354061 85354468 + 2 NA Intergenic Intergenic -928180 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 388-38 chr10 21024108 21024357 + 2 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -126630 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 215-233 chr4 97424035 97424209 + 2 NA intron (NR_102713, intron 1 of 5) intron (NR_102713, intron 1 of 5) 57196 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 251-53 chr11 72974924 72975098 + 2 NA intron (NM_014824, intron 8 of 19) intron (NM_014824, intron 8 of 19) 160600 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 277-125 chr15 27532856 27533087 + 2 NA 3' UTR (NM_033223, exon 10 of 10) 3' UTR (NM_033223, exon 10 of 10) -371652 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 259-376 chr7 126330436 126330607 + 2 NA Intergenic Intergenic 727663 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 157-81 chr3 25743478 25743595 + 2 NA intron (NM_018297, intron 4 of 11) L2b|LINE|L2 39907 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 513-164 chr20 58480450 58480793 + 2 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 34317 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 220-64 chr11 16321913 16322072 + 2 NA intron (NM_033326, intron 2 of 15) intron (NM_033326, intron 2 of 15) 34554 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 354-93 chr11 115540471 115540666 + 2 NA Intergenic Intergenic -36153 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 525-29 chr10 61830456 61830868 + 2 NA Intergenic Intergenic -71037 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 294-392 chr5 149766366 149766577 + 2 NA intron (NM_001172698, intron 1 of 10) MIRb|SINE|MIR -5469 NM_001172699 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 469-151 chr20 12680983 12681347 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 255798 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 626-101 chr4 55072610 55073095 + 2 NA Intergenic Intergenic 52743 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 286-278 chr3 61318583 61318749 + 2 NA Intergenic Intergenic -67205 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 235-177 chr2 101141583 101141745 + 2 NA intron (NM_001102426, intron 1 of 19) intron (NM_001102426, intron 1 of 19) 9783 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 385-296 chr5 42485216 42485594 + 2 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) 60424 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 190-87 chr2 70588713 70588880 + 2 NA Intergenic AluSp|SINE|Alu -34970 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 522-205 chr5 35926229 35926678 + 2 NA intron (NM_144647, intron 1 of 4) intron (NM_144647, intron 1 of 4) 12169 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 240-88 chr11 92281598 92281824 + 2 NA intron (NM_001367949, intron 1 of 27) intron (NM_001367949, intron 1 of 27) 56677 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 656-108 chr6 45602632 45603129 + 2 NA Intergenic L1MB7|LINE|L1 180605 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 213-230 chr5 45226813 45226968 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 417943 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 181-9 chr1 201416111 201416266 + 2 NA intron (NM_003281, intron 2 of 7) intron (NM_003281, intron 2 of 7) 5542 NM_003281 7135 Hs.320890 NM_003281 ENSG00000159173 TNNI1 SSTNI|TNN1 troponin I1, slow skeletal type protein-coding 423-239 chr6 21411936 21412343 + 2 NA Intergenic L1M4|LINE|L1 99753 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 290-433 chr7 97432185 97432446 + 2 NA Intergenic MIRc|SINE|MIR -299771 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 549-15 chr1 193413372 193413752 + 2 NA Intergenic L2a|LINE|L2 108817 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 377-13 chr1 100552790 100553047 + 2 NA Intergenic L1M1|LINE|L1 14779 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 541-106 chr19 58048088 58048576 + 2 NA intron (NM_182572, intron 4 of 5) intron (NM_182572, intron 4 of 5) -10907 NM_001289401 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 428-238 chr5 89211698 89212013 + 2 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -307750 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 234-304 chr5 26526602 26526776 + 2 NA Intergenic L1ME3A|LINE|L1 511897 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 278-39 chr10 75798573 75798766 + 2 NA intron (NM_032024, intron 1 of 5) L1M5|LINE|L1 15908 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 346-265 chr2 173557496 173557720 + 2 NA Intergenic Intergenic 202736 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 368-347 chr4 186358694 186358971 + 2 NA intron (NR_033900, intron 1 of 3) L1MC5a|LINE|L1 92643 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 389-69 chr11 109344874 109345255 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -77126 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 389-288 chr5 76698090 76698450 + 2 NA intron (NM_006633, intron 33 of 35) intron (NM_006633, intron 33 of 35) -14133 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 288-77 chr11 119118972 119119211 + 2 NA TTS (NM_001290474) TTS (NM_001290474) -2432 NM_001351961 25988 Hs.504091 NM_015517 ENSG00000172273 HINFP HiNF-P|MIZF|ZNF743 histone H4 transcription factor protein-coding 204-163 chr2 240099710 240099905 + 2 NA Intergenic L1PB3|LINE|L1 36498 NM_001163424 150678 Hs.293884 NM_138336 ENSG00000172428 COPS9 CSNAP|MYEOV2 COP9 signalosome subunit 9 protein-coding 412-18 chr10 11286923 11287294 + 2 NA intron (NM_001025076, intron 8 of 13) intron (NM_001025076, intron 8 of 13) 57566 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 302-402 chr7 15609440 15609654 + 2 NA Intergenic Intergenic -47532 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 240-399 chr7 70949226 70949404 + 2 NA Intergenic L1MB8|LINE|L1 -182829 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 365-349 chr6 62978642 62978875 + 2 NA Intergenic Intergenic 341219 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 312-331 chr3 67860912 67861170 + 2 NA intron (NR_109992, intron 5 of 6) MIRb|SINE|MIR -130551 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 539-199 chr7 124620921 124621415 + 2 NA Intergenic L1MA7|LINE|L1 144624 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 220-151 chr2 8247586 8247775 + 2 NA intron (NR_152741, intron 8 of 9) intron (NR_152741, intron 8 of 9) 80739 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 449-29 chr10 49084227 49084559 + 2 NA intron (NM_001031746, intron 3 of 7) intron (NM_001031746, intron 3 of 7) 31129 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 220-368 chr8 88724778 88724925 + 2 NA Intergenic L1MA9|LINE|L1 -397368 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 771-81 chr7 114074370 114074981 + 2 NA Intergenic Intergenic -11652 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 244-86 chr14 30124312 30124504 + 2 NA Intergenic Intergenic -196561 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 348-571 chrX 94354492 94354694 + 2 NA Intergenic MER112|DNA|hAT-Charlie 680387 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 184-156 chr7 26995331 26995506 + 2 NA Intergenic Intergenic 100582 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 368-363 chr5 80902107 80902413 + 2 NA Intergenic Intergenic -58103 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 433-127 chr2 26650779 26651109 + 2 NA Intergenic L1MEg|LINE|L1 -9578 NM_001029881 130106 Hs.591579 NM_001029881 ENSG00000157884 CIB4 KIP4 calcium and integrin binding family member 4 protein-coding 327-39 chr10 25758393 25758673 + 2 NA Intergenic Intergenic 106821 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 250-226 chr2 183797628 183797792 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -581265 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 189-194 chr7 119523222 119523323 + 2 NA Intergenic L1MD|LINE|L1 384103 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 301-32 chr1 247035194 247035424 + 2 NA 3' UTR (NM_001204220, exon 4 of 4) 3' UTR (NM_001204220, exon 4 of 4) -27252 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 310-377 chr4 94639637 94639862 + 2 NA intron (NM_006457, intron 8 of 12) intron (NM_006457, intron 8 of 12) 117784 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 273-58 chr10 76772283 76772440 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -115683 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 398-171 chr2 116259226 116259608 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 915602 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 218-316 chr8 56440835 56440986 + 2 NA TTS (NM_001135690) TTS (NM_001135690) -4897 NR_125813 101929415 Hs.701520 NR_125813 ENSG00000254254 LOC101929415 - uncharacterized LOC101929415 ncRNA 259-306 chr5 12823919 12824081 + 2 NA Intergenic L1PB4|LINE|L1 156141 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 365-274 chr3 191880911 191881178 + 2 NA Intergenic Intergenic -357586 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 503-225 chr5 12584232 12584511 + 2 NA intron (NR_033383, intron 1 of 3) L1MA2|LINE|L1 9514 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 251-395 chr8 93005680 93005872 + 2 NA Intergenic L1MA6|LINE|L1 -23975 NR_107051 102467005 NR_107051 ENSG00000277063 MIR8084 hsa-mir-8084 microRNA 8084 ncRNA 509-212 chr6 38001347 38001707 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 181800 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 682-22 chr12 38960318 38960677 + 2 NA Intergenic Intergenic -54906 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 235-95 chr13 112878968 112879165 + 2 NA intron (NM_015205, intron 29 of 29) intron (NM_015205, intron 29 of 29) 89572 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 357-134 chr15 91644179 91644374 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 180937 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 161-127 chr8 114160134 114160272 + 2 NA Intergenic LTR8|LTR|ERV1 -723264 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 494-102 chr18 7722255 7722599 + 2 NA intron (NM_002845, intron 1 of 30) L1M4|LINE|L1 155111 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 292-351 chr5 58727434 58727690 + 2 NA intron (NM_138453, intron 3 of 4) L1M5|LINE|L1 144487 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 191-164 chr5 20635313 20635473 + 2 NA intron (NR_149120, intron 1 of 11) L1MA4A|LINE|L1 -19858 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 178-112 chr5 99714274 99714444 + 2 NA Intergenic Intergenic 180369 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 447-60 chr12 85400999 85401267 + 2 NA Intergenic L1ME1|LINE|L1 120913 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 300-126 chr15 27375499 27375717 + 2 NA intron (NM_001270873, intron 5 of 5) THE1B|LTR|ERVL-MaLR -214289 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 475-206 chr4 53702229 53702681 + 2 NA intron (NR_125918, intron 1 of 2) intron (NR_125918, intron 1 of 2) 6554 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 592-162 chr7 72452717 72453077 + 2 NA Intergenic LTR50|LTR|ERVL -5754 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 280-285 chr4 59573962 59574154 + 2 NA Intergenic Intergenic 560485 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 685-69 chr3 156033693 156034195 + 2 NA Intergenic Intergenic -86604 NM_172160 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 309-421 chr5 9686777 9687022 + 2 NA intron (NR_027112, intron 9 of 12) L1ME4a|LINE|L1 -56548 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 363-71 chr10 129717726 129717992 + 2 NA intron (NM_002412, intron 3 of 4) intron (NM_002412, intron 3 of 4) 125515 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 489-2 chr1 35627810 35628140 + 2 NA intron (NM_002794, intron 3 of 5) intron (NM_002794, intron 3 of 5) 3562 NM_001199780 5690 Hs.471441 NM_002794 ENSG00000126067 PSMB2 HC7-I proteasome subunit beta 2 protein-coding 141-73 chr5 53360849 53360958 + 2 NA Intergenic Intergenic -119726 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 444-183 chr4 175729821 175730166 + 2 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 57683 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 549-43 chr12 29838612 29839014 + 2 NA Intergenic L1MA3|LINE|L1 -54054 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 286-346 chr5 25048232 25048471 + 2 NA Intergenic L1M4b|LINE|L1 142305 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 633-129 chrX 47795618 47795967 + 2 NA Intergenic Intergenic -41110 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 209-2 chr1 41501809 41501919 + 2 NA Intergenic Intergenic -17181 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 526-66 chr13 71408384 71408678 + 2 NA Intergenic Intergenic 393390 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 459-273 chr7 19603522 19603929 + 2 NA Intergenic L1MC5|LINE|L1 101711 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 385-411 chr9 107412242 107412527 + 2 NA Intergenic L1M3|LINE|L1 54201 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 459-10 chr1 91082895 91083271 + 2 NA Intergenic Intergenic -60828 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 197-188 chr7 15094329 15094500 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -119556 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 201-2 chr1 10294461 10294611 + 2 NA intron (NM_001365953, intron 15 of 20) intron (NM_001365953, intron 15 of 20) -4430 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 248-156 chr18 11962963 11963144 + 2 NA Intergenic Intergenic -18454 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 207-47 chr10 130902880 130903078 + 2 NA Intergenic Intergenic 59689 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 278-282 chr3 97587958 97588234 + 2 NA intron (NM_001080448, intron 11 of 17) Charlie7a|DNA|hAT-Charlie 148489 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 383-337 chr6 49001005 49001208 + 2 NA Intergenic MIRb|SINE|MIR 462147 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 339-159 chr14 58744185 58744484 + 2 NA Intergenic Intergenic -83954 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 334-489 chr7 17386112 17386365 + 2 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 11321 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 428-61 chr13 94279224 94279534 + 2 NA intron (NM_005708, intron 4 of 8) L1PA8A|LINE|L1 -91388 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 323-95 chr11 101226348 101226646 + 2 NA Intergenic Intergenic -96684 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 541-109 chr2 30499008 30499409 + 2 NA intron (NM_001304445, intron 3 of 7) AluSq2|SINE|Alu 51962 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 450-202 chr3 118988131 118988558 + 2 NA intron (NM_001353319, intron 1 of 7) MIR3|SINE|MIR 45268 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 329-63 chr10 76627052 76627224 + 2 NA Intergenic Intergenic -260906 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 329-239 chr18 53006551 53006767 + 2 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -230442 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 290-222 chr2 137847435 137847652 + 2 NA Intergenic L1MA7|LINE|L1 80389 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 474-73 chr13 37302749 37303133 + 2 NA Intergenic Intergenic 181843 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 226-257 chr4 87333477 87333632 + 2 NA Intergenic L1PA14|LINE|L1 -10672 NM_001136230 345275 Hs.284414 NM_178135 ENSG00000170509 HSD17B13 HMFN0376|NIIL497|SCDR9|SDR16C3 hydroxysteroid 17-beta dehydrogenase 13 protein-coding 399-89 chr14 65114160 65114531 + 2 NA Intergenic Intergenic -11650 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 374-146 chr17 65470512 65470741 + 2 NA Intergenic Intergenic 13085 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 310-450 chr6 71244168 71244467 + 2 NA Intergenic Intergenic -44494 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 363-474 chr9 78799557 78799913 + 2 NA Intergenic L1MB5|LINE|L1 345931 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 311-295 chr20 15560002 15560163 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 363232 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 267-102 chr14 20117805 20118054 + 2 NA exon (NM_001004715, exon 1 of 1) exon (NM_001004715, exon 1 of 1) 461 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 413-285 chr7 135047895 135048190 + 2 NA intron (NM_001345850, intron 6 of 11) L1MB1|LINE|L1 61534 NM_001345850 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 648-142 chr8 43681928 43682393 + 2 NA Intergenic ALR/Alpha|Satellite|centr 389718 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 226-372 chr9 12442662 12442821 + 2 NA Intergenic Intergenic -250644 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 283-378 chr5 125190150 125190363 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 153425 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 222-161 chr2 14922582 14922740 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 289944 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 306-307 chr3 51205945 51206167 + 2 NA intron (NM_004947, intron 12 of 52) intron (NM_004947, intron 12 of 52) -179235 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 357-449 chr8 112275771 112276011 + 2 NA intron (NM_001363185, intron 55 of 66) THE1B-int|LTR|ERVL-MaLR -367602 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 368-140 chr14 50512518 50512748 + 2 NA intron (NM_198794, intron 2 of 31) intron (NM_198794, intron 2 of 31) 19936 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 396-250 chr4 44117254 44117593 + 2 NA Intergenic Intergenic 100361 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 317-159 chr14 82806306 82806573 + 2 NA Intergenic MER67B|LTR|ERV1 163807 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 517-135 chr2 118325000 118325483 + 2 NA Intergenic Intergenic -138855 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 558-156 chr4 76355738 76356268 + 2 NA intron (NM_001042784, intron 13 of 23) intron (NM_001042784, intron 13 of 23) 49977 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 310-554 chr9 83383851 83384157 + 2 NA intron (NM_001244960, intron 2 of 13) intron (NM_001244960, intron 2 of 13) -52043 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 370-368 chr5 46407207 46407446 + 2 NA Intergenic ALR/Alpha|Satellite|centr -710946 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 279-193 chr2 129156857 129157049 + 2 NA Intergenic MIR|SINE|MIR 116938 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 445-197 chr4 61395005 61395292 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 192976 NM_001371342 503-116 chr16 71297047 71297412 + 2 NA Intergenic LTR45C|LTR|ERV1 -7507 NM_001324377 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 816-18 chr18 4520619 4521348 + 2 NA Intergenic Intergenic -65676 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 457-243 chr7 104474619 104475001 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 146154 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 271-405 chr7 52688693 52688886 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -346844 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 479-55 chr14 42106019 42106348 + 2 NA Intergenic L1PA15-16|LINE|L1 499327 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 238-299 chr5 76692730 76692944 + 2 NA intron (NM_006633, intron 30 of 35) intron (NM_006633, intron 30 of 35) -19566 NR_028375 100302746 NR_028375 NCRUPAR NCRNA00193|ncR-uPAR non-protein coding RNA, upstream of F2R/PAR1 ncRNA 364-253 chr21 19209764 19210020 + 2 NA Intergenic Intergenic -450080 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 319-497 chr7 37373591 37373797 + 2 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) -20026 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 247-108 chr13 111903591 111903801 + 2 NA Intergenic L3|LINE|CR1 10200 NR_120401 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 366-129 chr14 81614828 81615113 + 2 NA intron (NR_110074, intron 1 of 2) L1MC4a|LINE|L1 8091 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 257-227 chr2 216917798 216917968 + 2 NA Intergenic Intergenic 47111 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 207-30 chr10 18941238 18941350 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -107507 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 553-254 chrX 148603525 148603868 + 2 NA intron (NM_001169124, intron 1 of 19) L1MC4|LINE|L1 103079 NM_001169124 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 220-276 chr5 18668163 18668320 + 2 NA Intergenic Intergenic 860967 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 254-182 chr2 50514350 50514565 + 2 NA intron (NM_001330096, intron 7 of 16) L2a|LINE|L2 -166701 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 187-133 chr4 147264325 147264492 + 2 NA Intergenic L1MDa|LINE|L1 80309 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 420-252 chr6 81927063 81927359 + 2 NA intron (NR_149135, intron 3 of 3) intron (NR_149135, intron 3 of 3) 6269 NR_149136 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 363-118 chr13 43492899 43493092 + 2 NA intron (NM_001347965, intron 1 of 15) MLT2D|LTR|ERVL 44143 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 258-399 chr8 101839658 101839827 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -48773 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 341-501 chr7 96027676 96027867 + 2 NA intron (NM_004411, intron 10 of 16) intron (NM_004411, intron 10 of 16) 191985 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 478-158 chr2 208383831 208384214 + 2 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) -22808 NM_005048 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 326-401 chr5 36404639 36404879 + 2 NA Intergenic Intergenic -102857 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 266-401 chr7 90802175 90802435 + 2 NA intron (NM_012395, intron 4 of 13) intron (NM_012395, intron 4 of 13) 92489 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 508-122 chr2 213659284 213659631 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -98610 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 369-337 chr5 124382835 124383067 + 2 NA intron (NR_125774, intron 4 of 5) MER11A|LTR|ERVK 55569 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 368-125 chr13 43420811 43421148 + 2 NA intron (NM_001347963, intron 2 of 15) intron (NM_001347963, intron 2 of 15) -27873 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 582-10 chr10 76342551 76342933 + 2 NA intron (NM_001305581, intron 6 of 6) L1MC4|LINE|L1 -545302 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 290-205 chr2 52932055 52932230 + 2 NA Intergenic Intergenic -229527 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 263-310 chr5 5778236 5778435 + 2 NA Intergenic Intergenic 355658 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 577-98 chr2 147385332 147385879 + 2 NA Intergenic MER99|DNA|hAT? -458912 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 578-173 chr8 71100932 71101409 + 2 NA Intergenic Intergenic 255536 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 336-291 chr2 146822583 146822781 + 2 NA Intergenic Intergenic 235625 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 270-424 chr9 34116727 34116977 + 2 NA intron (NM_015397, intron 2 of 8) AluSx1|SINE|Alu 9846 NM_015397 25853 Hs.493750 NM_015397 ENSG00000198876 DCAF12 CT102|KIAA1892|TCC52|WDR40A DDB1 and CUL4 associated factor 12 protein-coding 235-388 chr9 68523750 68523950 + 2 NA intron (NM_021965, intron 10 of 10) intron (NM_021965, intron 10 of 10) 17017 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 305-386 chr4 61927450 61927615 + 2 NA intron (NM_001322246, intron 12 of 25) intron (NM_001322246, intron 12 of 25) 234233 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 327-219 chr19 27919764 27919949 + 2 NA non-coding (NR_146735, exon 7 of 8) non-coding (NR_146735, exon 7 of 8) -125916 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 342-440 chr6 5694770 5694977 + 2 NA intron (NR_110842, intron 2 of 3) AluJr|SINE|Alu 399 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 273-10 chr1 63182724 63182988 + 2 NA intron (NR_038252, intron 6 of 11) L1MA8|LINE|L1 134401 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 475-65 chr12 86804770 86805013 + 2 NA intron (NM_001351286, intron 1 of 7) intron (NM_001351286, intron 1 of 7) 34109 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 142-61 chr5 161195981 161196060 + 2 NA Intergenic Intergenic -257394 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 251-38 chr10 83282161 83282318 + 2 NA Intergenic L1ME2z|LINE|L1 394850 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 315-476 chr8 74839646 74839872 + 2 NA intron (NM_015886, intron 2 of 5) intron (NM_015886, intron 2 of 5) 15225 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 283-344 chr5 12287980 12288220 + 2 NA Intergenic L1ME2z|LINE|L1 -286757 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 287-364 chr6 127619616 127619780 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 42524 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 264-410 chr8 66919519 66919705 + 2 NA 3' UTR (NM_173518, exon 15 of 15) 3' UTR (NM_173518, exon 15 of 15) 2937 NR_002598 641648 NR_002598 ENSG00000254341 SNORD87 HBII-276|U87 small nucleolar RNA, C/D box 87 snoRNA 337-466 chr5 152231951 152232204 + 2 NA intron (NR_109876, intron 1 of 2) L1ME2|LINE|L1 173202 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 244-72 chr12 65962366 65962537 + 2 NA intron (NM_003483, intron 4 of 4) intron (NM_003483, intron 4 of 4) 61275 NR_106722 102464827 NR_106722 ENSG00000276878 MIR6074 hsa-mir-6074 microRNA 6074 ncRNA 331-90 chr11 59068568 59068864 + 2 NA Intergenic L1ME1|LINE|L1 -10264 NR_033853 283194 NR_033853 ENSG00000255240 LOC283194 - uncharacterized LOC283194 ncRNA 398-11 chr1 98311498 98311739 + 2 NA Intergenic Intergenic 100907 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 1019-15 chr3 87327952 87328747 + 2 NA Intergenic L1MA3|LINE|L1 -51765 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 269-305 chr5 24218228 24218386 + 2 NA Intergenic L1MB1|LINE|L1 266959 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 664-125 chr9 95086595 95086960 + 2 NA promoter-TSS (NR_036109) promoter-TSS (NR_036109) -683 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 331-58 chr10 77630158 77630333 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 7563 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 421-318 chr9 38350494 38350846 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -42032 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 327-505 chr8 136654676 136654943 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 124011 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 189-68 chr16 83734123 83734275 + 2 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 69777 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 463-160 chr20 4391693 4391968 + 2 NA Intergenic L1MD2|LINE|L1 -142543 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 348-452 chr6 62074662 62074949 + 2 NA intron (NR_146874, intron 2 of 13) L1MB7|LINE|L1 211420 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 170-103 chr4 30687118 30687248 + 2 NA Intergenic Intergenic -33186 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 293-468 chr8 141903718 141903978 + 2 NA Intergenic Intergenic -117535 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 449-154 chr21 25853814 25854210 + 2 NA Intergenic LTR50|LTR|ERVL -118358 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 286-165 chr17 70273273 70273464 + 2 NA Intergenic Intergenic 103833 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 396-324 chr7 13716669 13716885 + 2 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 269737 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 218-325 chr8 87028916 87029079 + 2 NA intron (NM_173538, intron 4 of 10) L1M2|LINE|L1 162582 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 444-239 chr7 38066175 38066480 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -111918 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 289-175 chr17 35210871 35211064 + 2 NA Intergenic L1ME3A|LINE|L1 -16574 NM_152462 146861 Hs.514814 NM_152462 ENSG00000164729 SLC35G3 AMAC1|TMEM21A solute carrier family 35 member G3 protein-coding 289-392 chr5 133342510 133342699 + 2 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 85102 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 449-237 chr6 62726424 62726779 + 2 NA Intergenic L1M2|LINE|L1 -440374 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 509-112 chr2 65856667 65857087 + 2 NA Intergenic L1MD3|LINE|L1 -424278 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 270-222 chr22 25222862 25223094 + 2 NA intron (NM_000496, intron 2 of 5) MER33|DNA|hAT-Charlie 3339 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 345-510 chr8 28039777 28040024 + 2 NA intron (NM_001010906, intron 13 of 18) MLT1B|LTR|ERVL-MaLR 44036 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 353-290 chr20 48413911 48414158 + 2 NA Intergenic MIR|SINE|MIR 54123 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 128-2 chr1 35736965 35737071 + 2 NA exon (NM_022111, exon 24 of 25) exon (NM_022111, exon 24 of 25) -18134 NM_152374 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 251-216 chr21 44584777 44584939 + 2 NA intron (NM_144991, intron 1 of 11) L1M5|LINE|L1 -4254 NM_198694 386680 Hs.688629 NM_198694 ENSG00000241123 KRTAP10-5 KAP10.5|KAP18-5|KAP18.5|KRTAP10.5|KRTAP18-5|KRTAP18.1|KRTAP18.5 keratin associated protein 10-5 protein-coding 222-311 chr5 165023231 165023401 + 2 NA Intergenic Intergenic 553037 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 309-544 chr8 81860143 81860338 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -17954 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 395-243 chr3 194049071 194049353 + 2 NA non-coding (NR_136181, exon 4 of 4) non-coding (NR_136181, exon 4 of 4) 20317 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 383-313 chr5 46227410 46227777 + 2 NA Intergenic ALR/Alpha|Satellite|centr -531213 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 325-362 chr3 122228016 122228191 + 2 NA intron (NM_001178065, intron 1 of 6) MIRc|SINE|MIR 43776 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 331-334 chr22 47971845 47972052 + 2 NA Intergenic MER34C_|LTR|ERV1 -302416 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 544-37 chr10 107898805 107899183 + 2 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 170299 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 759-53 chr4 93905652 93906209 + 2 NA Intergenic AluSp|SINE|Alu 77177 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 240-15 chr1 102383742 102383963 + 2 NA Intergenic Intergenic -386618 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 228-353 chr8 126391611 126391779 + 2 NA Intergenic L3|LINE|CR1 66200 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 358-261 chr20 46911990 46912310 + 2 NA intron (NM_172110, intron 1 of 13) intron (NM_172110, intron 1 of 13) 17307 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 522-234 chr7 52064935 52065289 + 2 NA Intergenic L1M5|LINE|L1 -671856 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 211-184 chr3 48955507 48955646 + 2 NA intron (NM_001349223, intron 5 of 17) intron (NM_001349223, intron 5 of 17) -34332 NM_177938 54681 Hs.654944 NM_017732 ENSG00000178467 P4HTM EGLN4|HIFPH4|P4H-TM|PH-4|PH4|PHD4 prolyl 4-hydroxylase, transmembrane protein-coding 504-248 chr7 136846996 136847337 + 2 NA Intergenic Intergenic -21486 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 420-245 chr5 180542628 180542937 + 2 NA intron (NM_001370474, intron 1 of 10) intron (NM_001370474, intron 1 of 10) 1128 NM_001370474 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 532-174 chr3 132813072 132813513 + 2 NA intron (NR_002811, intron 6 of 10) L2|LINE|L2 -90833 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 534-6 chr1 79925304 79925722 + 2 NA Intergenic Intergenic -610242 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 538-149 chr3 83193722 83194010 + 2 NA Intergenic Intergenic 1207724 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 317-546 chrX 62810680 62810898 + 2 NA Intergenic ALR/Alpha|Satellite|centr 540543 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 274-275 chr3 188033245 188033499 + 2 NA Intergenic L1MB8|LINE|L1 -56965 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 742-42 chr2 135551424 135551882 + 2 NA intron (NM_001282799, intron 1 of 22) intron (NM_001282799, intron 1 of 22) 20169 NM_015361 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 279-417 chr8 86991911 86992090 + 2 NA intron (NM_173538, intron 4 of 10) L1PA16|LINE|L1 125585 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 348-566 chrX 16594146 16594327 + 2 NA intron (NM_019857, intron 17 of 18) intron (NM_019857, intron 17 of 18) 32849 NR_039762 100616428 NR_039762 ENSG00000265144 MIR548AM - microRNA 548am ncRNA 307-134 chr14 47663086 47663358 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 11732 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 302-267 chr22 28888932 28889228 + 2 NA intron (NM_001206998, intron 1 of 8) AluSx3|SINE|Alu 5508 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 341-215 chr19 28696188 28696461 + 2 NA intron (NR_110759, intron 5 of 9) L1MD1|LINE|L1 31370 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 339-96 chr11 47023416 47023733 + 2 NA intron (NR_103472, intron 2 of 7) L1MB3|LINE|L1 86813 NM_001003677 79096 Hs.368296 NM_024113 ENSG00000149179 C11orf49 - chromosome 11 open reading frame 49 protein-coding 595-168 chr8 139585132 139585463 + 2 NA Intergenic Intergenic 117826 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 301-277 chr3 33920706 33920897 + 2 NA Intergenic Intergenic 122171 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 200-94 chr16 35261947 35262087 + 2 NA Intergenic Intergenic 66258 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 492-247 chr7 140957840 140958219 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -33100 NM_001354609 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 274-149 chr16 6199712 6199882 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 180094 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 519-53 chr12 129651795 129652174 + 2 NA intron (NM_133448, intron 2 of 8) Charlie20a|DNA|hAT-Charlie 252041 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 306-186 chr16 73647956 73648122 + 2 NA Intergenic L1ME3G|LINE|L1 261234 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 405-349 chr9 102673096 102673497 + 2 NA Intergenic L1MEd|LINE|L1 153659 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 395-168 chr2 65473607 65473845 + 2 NA Intergenic Intergenic -41127 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 207-248 chr5 142420497 142420695 + 2 NA intron (NR_120664, intron 3 of 3) intron (NR_120664, intron 3 of 3) 95303 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 551-176 chr6 40592818 40593362 + 2 NA Intergenic Intergenic -5726 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 429-127 chr18 31526939 31527353 + 2 NA intron (NM_001943, intron 8 of 14) Tigger3b|DNA|TcMar-Tigger 28969 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 822-21 chr17 74145482 74146074 + 2 NA Intergenic LTR33|LTR|ERVL -57900 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 276-248 chr2 191187836 191187988 + 2 NA Intergenic L1MD2|LINE|L1 -36316 NM_001243835 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 222-196 chr2 179626748 179626939 + 2 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 33351 NM_001352812 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 209-201 chr3 77908885 77909055 + 2 NA Intergenic AluSz|SINE|Alu 139993 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 239-6 chr1 66889883 66890119 + 2 NA intron (NM_024763, intron 4 of 16) L2c|LINE|L2 34855 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 521-42 chr11 10018563 10018935 + 2 NA intron (NM_030962, intron 6 of 39) intron (NM_030962, intron 6 of 39) 179607 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 278-5 chr1 68918987 68919189 + 2 NA Intergenic Intergenic -136810 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 258-122 chr14 50912969 50913114 + 2 NA exon (NM_001163940, exon 12 of 19) exon (NM_001163940, exon 12 of 19) 31442 NM_001163940 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 402-279 chr5 99281046 99281414 + 2 NA Intergenic Intergenic -252760 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 438-82 chr15 97135906 97136277 + 2 NA Intergenic Intergenic 352656 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 514-291 chr8 134026666 134027013 + 2 NA Intergenic LTR8B|LTR|ERV1 140343 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 372-187 chr17 54497147 54497364 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -403436 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 624-27 chr12 14289420 14289835 + 2 NA Intergenic MER21C|LTR|ERVL -76005 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 355-141 chr13 32133212 32133442 + 2 NA intron (NM_023037, intron 8 of 60) MIR|SINE|MIR 101553 NM_023037 10129 Hs.507669 NM_023037 ENSG00000073910 FRY 13CDNA73|214K23.2|C13orf14|CG003|bA207N4.2|bA37E23.1 FRY microtubule binding protein protein-coding 361-177 chr17 80308510 80308840 + 2 NA intron (NM_020954, intron 13 of 16) intron (NM_020954, intron 13 of 16) 47823 NM_001256071 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 378-62 chr10 78811030 78811242 + 2 NA Intergenic Intergenic 256312 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 205-13 chr1 64272893 64273055 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 69351 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 286-472 chr9 27822153 27822366 + 2 NA Intergenic Intergenic -248393 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 538-240 chr8 118754337 118754724 + 2 NA Intergenic Intergenic -132567 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 299-2 chr1 11540835 11541130 + 2 NA Intergenic L1ME4b|LINE|L1 61827 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 343-208 chr18 76074774 76075026 + 2 NA Intergenic Intergenic -48098 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 398-114 chr14 91056281 91056492 + 2 NA intron (NM_001322235, intron 1 of 17) MLT1K|LTR|ERVL-MaLR 3738 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 330-60 chr10 53477345 53477567 + 2 NA Intergenic LTR58|LTR|ERV1 -705756 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 540-78 chr15 79052222 79052732 + 2 NA intron (NM_001145648, intron 3 of 26) intron (NM_001145648, intron 3 of 26) 38303 NM_001145648 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 266-70 chr11 90594335 90594580 + 2 NA intron (NR_104190, intron 2 of 6) MER73|LTR|ERVL -38600 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 418-50 chr11 128222152 128222536 + 2 NA intron (NR_146647, intron 3 of 3) intron (NR_146647, intron 3 of 3) 13578 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 410-78 chr13 43947735 43948086 + 2 NA Intergenic L1MC2|LINE|L1 68006 NM_001350646 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 224-257 chr5 113710059 113710180 + 2 NA Intergenic Intergenic 196425 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 214-92 chr13 97102626 97102782 + 2 NA Intergenic Intergenic 76918 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 385-141 chr18 1622622 1622987 + 2 NA Intergenic L1MC3|LINE|L1 -263175 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 277-241 chr22 26751243 26751426 + 2 NA intron (NR_110543, intron 2 of 5) intron (NR_110543, intron 2 of 5) 78491 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 374-187 chr2 80972243 80972467 + 2 NA Intergenic L1PA16|LINE|L1 494591 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 158-118 chr8 122895480 122895623 + 2 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 113896 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 401-260 chr5 75572604 75572836 + 2 NA intron (NM_016218, intron 4 of 14) intron (NM_016218, intron 4 of 14) -38756 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 522-3 chr1 78461907 78462333 + 2 NA Intergenic L1PA15|LINE|L1 -28854 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 291-255 chr20 8623522 8623733 + 2 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) -207558 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 338-245 chr2 22871244 22871518 + 2 NA Intergenic Intergenic 334902 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 528-16 chr1 101637346 101637790 + 2 NA Intergenic Intergenic 209512 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 396-107 chr14 71827812 71828038 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -104246 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 507-251 chr8 113781835 113782159 + 2 NA Intergenic L1MCb|LINE|L1 -345058 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 259-288 chr4 85668566 85668807 + 2 NA intron (NM_001025616, intron 2 of 9) L2a|LINE|L2 -53782 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 533-237 chr8 127148716 127149094 + 2 NA Intergenic AluJr|SINE|Alu 48722 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 283-315 chr4 38460532 38460719 + 2 NA intron (NR_110951, intron 2 of 7) MER45C|DNA|hAT-Tip100 -49142 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 267-251 chr3 36062422 36062587 + 2 NA Intergenic Intergenic -317983 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 326-137 chr13 65398031 65398329 + 2 NA Intergenic Intergenic -467867 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 173-93 chr3 109139620 109139776 + 2 NA intron (NR_161294, intron 2 of 2) intron (NR_161294, intron 2 of 2) 2979 NR_161294 401081 Hs.280892 NM_001351622 ENSG00000241224 C3orf85 - chromosome 3 open reading frame 85 protein-coding 325-46 chr10 3008439 3008623 + 2 NA Intergenic Intergenic 58402 NR_160682 101927824 NR_160681 LOC101927824 - uncharacterized LOC101927824 ncRNA 213-83 chr14 28198570 28198757 + 2 NA Intergenic Intergenic -525442 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 410-312 chr8 113008449 113008805 + 2 NA intron (NM_198123, intron 6 of 70) Charlie5|DNA|hAT-Charlie 365134 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 524-32 chr10 83583935 83584319 + 2 NA Intergenic HAL1|LINE|L1 92962 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 418-101 chr19 7350386 7350685 + 2 NA intron (NM_001367823, intron 1 of 28) intron (NM_001367823, intron 1 of 28) 1598 NM_001367823 23370 Hs.465761 NM_015318 ENSG00000104880 ARHGEF18 P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF Rho/Rac guanine nucleotide exchange factor 18 protein-coding 660-9 chr10 32668955 32669542 + 2 NA intron (NM_001321115, intron 22 of 43) L1MA8|LINE|L1 223108 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 393-110 chr15 36070435 36070735 + 2 NA Intergenic L1MC4a|LINE|L1 143729 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 289-171 chr16 73099052 73099263 + 2 NA Intergenic Intergenic 6808 NR_027756 283902 Hs.382776 NM_001101347 ENSG00000260880 HCCAT5 FJ222407|HTA hepatocellular carcinoma associated transcript 5 ncRNA 289 chr1 5224283 5224533 + 2 NA Intergenic AluSc|SINE|Alu 569799 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 314-172 chr14 63238361 63238560 + 2 NA intron (NM_020663, intron 1 of 4) AluJb|SINE|Alu 34017 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 305-218 chr18 49527332 49527557 + 2 NA Intergenic Intergenic -34613 NM_006033 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 310-502 chr8 16394010 16394172 + 2 NA Intergenic L2|LINE|L2 -201300 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 253-436 chr9 96094584 96094739 + 2 NA intron (NR_033838, intron 3 of 8) MIR|SINE|MIR 21750 NR_132344 158434 Hs.381771 NM_001256408 ENSG00000275465 LOC158434 - uncharacterized LOC158434 ncRNA 260-401 chr7 22220473 22220655 + 2 NA intron (NM_012294, intron 8 of 25) intron (NM_012294, intron 8 of 25) -25754 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 215-48 chr11 44298831 44298982 + 2 NA intron (NM_021926, intron 1 of 3) intron (NM_021926, intron 1 of 3) 11233 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 280-284 chr4 57996776 57997036 + 2 NA Intergenic Intergenic 539422 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 610-106 chr22 24774324 24774851 + 2 NA non-coding (NR_045648, exon 1 of 22) non-coding (NR_045648, exon 1 of 22) 133 NR_045649 440822 Hs.448343 NM_001008496 ENSG00000184571 PIWIL3 HIWI3 piwi like RNA-mediated gene silencing 3 protein-coding 196-264 chr9 1912489 1912652 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -102777 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 396-87 chr12 49762747 49763060 + 2 NA 3' UTR (NM_003217, exon 10 of 10) 3' UTR (NM_003217, exon 10 of 10) 21094 NM_001098576 7009 Hs.743965 NM_003217 ENSG00000139644 TMBIM6 BAXI1|BI-1|TEGT transmembrane BAX inhibitor motif containing 6 protein-coding 314-476 chr5 113804597 113804798 + 2 NA Intergenic Intergenic 291003 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 181-114 chr5 14953743 14953862 + 2 NA Intergenic Intergenic -82024 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 234-107 chr14 86007748 86007920 + 2 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 73156 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 482-162 chr3 46549950 46550358 + 2 NA intron (NM_024512, intron 2 of 8) intron (NM_024512, intron 2 of 8) -7244 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 649-77 chr3 194060881 194061503 + 2 NA intron (NR_136181, intron 1 of 3) Tigger3a|DNA|TcMar-Tigger 8337 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 344-201 chr18 22659781 22660027 + 2 NA Intergenic L1PA3|LINE|L1 126933 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 477-159 chr2 111635365 111635744 + 2 NA Intergenic Intergenic 135580 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 404-122 chr16 75715618 75715925 + 2 NA intron (NM_001355613, intron 2 of 2) AluSq2|SINE|Alu 10719 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 314-583 chr8 120261539 120261792 + 2 NA intron (NM_021110, intron 23 of 47) intron (NM_021110, intron 23 of 47) 136563 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 330-8 chr1 40616667 40616858 + 2 NA Intergenic L1MEc|LINE|L1 48920 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 285-282 chr3 131400714 131400888 + 2 NA Intergenic Intergenic 19027 NM_152395 131870 Hs.282050 NM_152395 ENSG00000198585 NUDT16 - nudix hydrolase 16 protein-coding 266-339 chr5 103316301 103316473 + 2 NA Intergenic Intergenic 56963 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 206-83 chr15 94550359 94550507 + 2 NA Intergenic Intergenic 194503 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 251-211 chr21 28803212 28803373 + 2 NA Intergenic Intergenic 82075 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 450-276 chr7 37995401 37995712 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 74237 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 464-203 chr5 72462589 72462933 + 2 NA intron (NM_152625, intron 1 of 4) AluSz|SINE|Alu 44649 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 165-107 chr6 38905536 38905665 + 2 NA TTS (NR_038401) TTS (NR_038401) 47507 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 232-394 chr9 20529326 20529500 + 2 NA intron (NM_001286691, intron 2 of 10) intron (NM_001286691, intron 2 of 10) -27071 NR_039685 100616441 NR_039685 ENSG00000264941 MIR4474 - microRNA 4474 ncRNA 656-16 chr1 247060069 247060624 + 2 NA intron (NM_033213, intron 1 of 3) L1MC|LINE|L1 18465 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 327-205 chr17 76976101 76976274 + 2 NA Intergenic HAL1ME|LINE|L1 -6988 NR_136416 105371899 Hs.634683 NR_136416 ENSG00000267568 LOC105371899 - uncharacterized LOC105371899 ncRNA 696-31 chr12 67567397 67567899 + 2 NA TTS (NR_103861) TTS (NR_103861) 47566 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LINC02408 - long intergenic non-protein coding RNA 2408 ncRNA 211-116 chr17 74163688 74163809 + 2 NA Intergenic L2a|LINE|L2 -39930 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 341-287 chr20 14110100 14110378 + 2 NA intron (NM_001351663, intron 3 of 17) L1MA2|LINE|L1 114723 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 207-82 chr14 62395501 62395675 + 2 NA Intergenic L1M1|LINE|L1 -255615 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 494-7 chr1 86765350 86765716 + 2 NA Intergenic Intergenic 60957 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 303-93 chr12 39725921 39726155 + 2 NA intron (NR_135051, intron 12 of 18) Tigger9b|DNA|TcMar-Tigger 99855 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 211-75 chr13 65007875 65008011 + 2 NA Intergenic Intergenic -858104 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 247-206 chr2 107626874 107627056 + 2 NA Intergenic L1MC3|LINE|L1 97546 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 611-9 chr1 213296527 213297031 + 2 NA Intergenic Intergenic 245538 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 218-146 chr2 31433785 31433937 + 2 NA Intergenic L2b|LINE|L2 -19119 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 272-374 chr6 19363833 19364033 + 2 NA Intergenic LTR16|LTR|ERVL -85888 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 290-230 chr2 194860954 194861175 + 2 NA Intergenic Intergenic 130469 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 254-69 chr12 5539318 5539475 + 2 NA Intergenic Intergenic 45264 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 438-271 chr8 71151013 71151392 + 2 NA Intergenic Intergenic 205504 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 1038-6 chr14 63242870 63243674 + 2 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 38829 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 340-95 chr11 132646106 132646340 + 2 NA intron (NM_002545, intron 2 of 6) L1PB1|LINE|L1 297414 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 337-282 chr2 173363721 173363995 + 2 NA exon (NM_145810, exon 4 of 9) exon (NM_145810, exon 4 of 9) 8986 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 553-123 chr2 107439499 107439938 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -89701 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 264-286 chr3 192985060 192985314 + 2 NA Intergenic Intergenic -67331 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 399-162 chr2 134330238 134330512 + 2 NA intron (NM_001371457, intron 5 of 16) intron (NM_001371457, intron 5 of 16) 76303 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 298-397 chr6 56670616 56670809 + 2 NA exon (NM_001144769, exon 9 of 97) exon (NM_001144769, exon 9 of 97) -27823 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 289-107 chr12 61199870 61200025 + 2 NA Intergenic LTR78B|LTR|ERV1 992892 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 228-336 chr8 78091628 78091805 + 2 NA Intergenic Intergenic -424624 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 498-245 chr7 32074690 32075033 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -3425 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 232-69 chr12 13173623 13173798 + 2 NA Intergenic Intergenic -23016 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 316-416 chr4 184571724 184571887 + 2 NA Intergenic Intergenic -34222 NR_147158 105377585 Hs.519127 NR_147158 ENSG00000271538 LINC02427 - long intergenic non-protein coding RNA 2427 ncRNA 386-26 chr10 20739709 20740057 + 2 NA Intergenic Intergenic 157719 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 172-78 chr3 79814129 79814293 + 2 NA Intergenic L1PA15-16|LINE|L1 -46213 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 211-118 chr18 394302 394453 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 106324 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 331-287 chr2 137589579 137589864 + 2 NA intron (NM_001316349, intron 17 of 27) intron (NM_001316349, intron 17 of 27) 338211 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 319-46 chr10 29206243 29206504 + 2 NA Intergenic L3|LINE|CR1 -82697 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 234-375 chr7 139613111 139613303 + 2 NA exon (NM_022740, exon 9 of 15) exon (NM_022740, exon 9 of 15) 89522 NM_001080511 154790 Hs.57806 NM_001080511 ENSG00000236279 CLEC2L - C-type lectin domain family 2 member L protein-coding 390-228 chr3 12331452 12331658 + 2 NA intron (NM_001330615, intron 1 of 5) L2c|LINE|L2 19175 NM_001330615 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 358-198 chr2 41798896 41799093 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -78561 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 188-191 chr7 42816010 42816155 + 2 NA Intergenic L1M1|LINE|L1 95761 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 227-113 chr14 83937812 83937998 + 2 NA Intergenic L3|LINE|CR1 1295273 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 560 chr1 10928532 10929042 + 2 NA Intergenic Intergenic 37900 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 256-353 chr6 24123918 24124083 + 2 NA Intergenic Intergenic -2215 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 245-57 chr10 90642470 90642634 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -101747 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 544-230 chr8 120259960 120260351 + 2 NA intron (NM_021110, intron 23 of 47) Charlie21a|DNA|hAT-Charlie 135053 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 277-77 chr11 81328456 81328622 + 2 NA Intergenic Intergenic 562297 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 228-73 chr12 65074964 65075138 + 2 NA intron (NM_007191, intron 3 of 9) intron (NM_007191, intron 3 of 9) 46254 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 532-95 chr17 70817919 70818272 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 384084 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 198-221 chr6 151557657 151557795 + 2 NA intron (NM_025059, intron 5 of 10) L1MA4A|LINE|L1 63709 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 172-20 chr10 111918856 111919003 + 2 NA Intergenic L2c|LINE|L2 264836 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 249-420 chr8 87044764 87044953 + 2 NA intron (NM_173538, intron 4 of 10) MER61F|LTR|ERV1 178443 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 253-30 chr1 215209268 215209456 + 2 NA intron (NM_001017424, intron 6 of 6) (TA)n|Simple_repeat|Simple_repeat 126625 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 124-58 chr5 27728838 27728936 + 2 NA Intergenic Intergenic 256595 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 206-152 chr3 23333952 23334130 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 130714 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 390-371 chr8 46366001 46366314 + 2 NA Intergenic ALR/Alpha|Satellite|centr 251486 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 183-107 chr4 83354499 83354625 + 2 NA Intergenic MER34A|LTR|ERV1 -19409 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 377-339 chr5 156719741 156720064 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -130393 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 350-65 chr11 3224094 3224296 + 2 NA TTS (NM_001039165) TTS (NM_001039165) -5382 NM_001164377 386746 Hs.730306 NM_001164377 ENSG00000182170 MRGPRG GPR169|MRGG MAS related GPR family member G protein-coding 212-5 chr1 89619064 89619184 + 2 NA Intergenic Intergenic 13770 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 LRRC8C-DT - LRRC8C divergent transcript ncRNA 321-209 chr16 23221473 23221741 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 38862 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 238-325 chr6 67270078 67270227 + 2 NA Intergenic L1MA9|LINE|L1 -785199 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 141-42 chr2 182433233 182433349 + 2 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -6243 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 210-51 chr11 102751528 102751679 + 2 NA Intergenic MIR|SINE|MIR -26649 NM_001304441 4317 Hs.161839 NM_002424 ENSG00000118113 MMP8 CLG1|HNC|MMP-8|PMNL-CL matrix metallopeptidase 8 protein-coding 383-423 chrX 99375194 99375477 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 1034938 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 258-9 chr1 98332333 98332583 + 2 NA Intergenic LTR78B|LTR|ERV1 121747 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 538-78 chr16 6490336 6490733 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -283275 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 287-319 chr5 76192192 76192376 + 2 NA intron (NM_014979, intron 2 of 12) MER5A1|DNA|hAT-Charlie 108901 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 193-194 chr8 82116849 82117008 + 2 NA Intergenic L1M3|LINE|L1 -274642 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 398-278 chr5 109486486 109486730 + 2 NA Intergenic Intergenic -76634 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 310-161 chr15 98476654 98476866 + 2 NA intron (NM_182562, intron 4 of 6) L1M4a1|LINE|L1 37576 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 333-581 chr8 111550351 111550661 + 2 NA Intergenic Intergenic 173867 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 383-230 chr21 23150339 23150581 + 2 NA Intergenic Intergenic 71176 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 446-224 chr4 135459046 135459427 + 2 NA Intergenic HAL1b|LINE|L1 -335677 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 507-130 chr2 107538829 107539195 + 2 NA intron (NR_146968, intron 2 of 2) L3b|LINE|CR1 9593 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 323-209 chr18 75371600 75371887 + 2 NA Intergenic Intergenic 55960 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 283-312 chr4 30628868 30629120 + 2 NA Intergenic Intergenic -91375 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 346-276 chr2 234801622 234801816 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 119051 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 314-253 chr19 23220613 23220772 + 2 NA TTS (NM_001355406) TTS (NM_001355406) 29702 NM_001355404 440519 Hs.675814 NM_001355404 ENSG00000196081 ZNF724 ZNF724P zinc finger protein 724 protein-coding 211-295 chr8 31739854 31740017 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 100183 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 112-48 chr8 29686767 29686843 + 2 NA Intergenic L1ME3Cz|LINE|L1 61304 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 121-60 chr7 42312585 42312673 + 2 NA Intergenic Intergenic -75420 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 290-339 chr5 39784158 39784352 + 2 NA Intergenic L1ME1|LINE|L1 263824 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 335-564 chr9 31591845 31592086 + 2 NA Intergenic Intergenic -210475 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 724-5 chr1 207213260 207213845 + 2 NA Intergenic L1M5|LINE|L1 -108126 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 335-62 chr10 66440597 66440817 + 2 NA intron (NM_001127384, intron 11 of 17) MIR|SINE|MIR -485329 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 400-378 chrX 126262694 126263044 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -96580 NM_001013628 340578 Hs.181867 NM_001013628 ENSG00000198354 DCAF12L2 WDR40C DDB1 and CUL4 associated factor 12 like 2 protein-coding 118-22 chr17 83139092 83139166 + 2 NA Intergenic Intergenic 57983 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 195-138 chr3 7347911 7348027 + 2 NA intron (NM_000844, intron 4 of 9) MIRb|SINE|MIR 187315 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 452-211 chr5 59704189 59704442 + 2 NA promoter-TSS (NR_030308) promoter-TSS (NR_030308) -612 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 237-118 chr15 57735914 57736091 + 2 NA Intergenic Intergenic 29288 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 584-186 chrX 125275325 125275775 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -44321 NM_001195272 100129520 NM_001195272 ENSG00000282815 TEX13C - TEX13 family member C protein-coding 180-110 chr3 192223838 192223972 + 2 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) -14725 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 640-119 chr6 93476521 93477127 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -57242 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 540-212 chr8 114747804 114748274 + 2 NA Intergenic Intergenic 919974 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 545-164 chr4 95611052 95611477 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -62291 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 347-173 chr17 62937594 62937806 + 2 NA Intergenic L1MC5|LINE|L1 -6515 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 384-66 chr11 124717501 124717707 + 2 NA Intergenic Intergenic -22338 NM_006176 4900 Hs.524116 NM_006176 ENSG00000154146 NRGN RC3|hng neurogranin protein-coding 401-37 chr10 76690169 76690475 + 2 NA Intergenic Intergenic -197722 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 310-394 chr5 26310206 26310477 + 2 NA Intergenic Intergenic 728245 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 379-285 chr6 38850607 38850900 + 2 NA intron (NM_001371, intron 37 of 91) MLT1C|LTR|ERVL-MaLR 102354 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 393-86 chr13 103727042 103727387 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 302014 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 468-210 chr3 154944655 154944946 + 2 NA Intergenic LTR14C|LTR|ERVK -79324 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 325-478 chr6 119396982 119397160 + 2 NA Intergenic MER52-int|LTR|ERV1 -47310 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 458-119 chr2 4872071 4872527 + 2 NA Intergenic Intergenic -216077 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 288-274 chr3 118801663 118801944 + 2 NA intron (NR_135547, intron 1 of 3) Tigger13a|DNA|TcMar-Tigger 9030 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 287-380 chr7 52488391 52488580 + 2 NA Intergenic Intergenic -547148 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 336-86 chr11 28230055 28230267 + 2 NA intron (NM_001113528, intron 4 of 6) intron (NM_001113528, intron 4 of 6) 121773 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 230-393 chr8 142734062 142734278 + 2 NA intron (NR_156431, intron 2 of 2) MER4B|LTR|ERV1 6947 NM_016647 51337 Hs.368402 NM_016647 ENSG00000130193 THEM6 C8orf55|DSCD75 thioesterase superfamily member 6 protein-coding 347-445 chr6 147590071 147590291 + 2 NA Intergenic Intergenic 81491 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 340-466 chr5 160915685 160915997 + 2 NA Intergenic Intergenic 22785 NR_151858 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 277-438 chr9 4732524 4732702 + 2 NA intron (NM_001199853, intron 1 of 4) intron (NM_001199853, intron 1 of 4) -6386 NM_001199856 50808 Hs.732022 NM_016282 ENSG00000147853 AK3 AK3L1|AK6|AKL3L|AKL3L1|FIX adenylate kinase 3 protein-coding 542-146 chr4 38767367 38767871 + 2 NA Intergenic L2a|LINE|L2 15371 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 239-16 chr1 209737331 209737502 + 2 NA intron (NR_134510, intron 1 of 2) intron (NR_134510, intron 1 of 2) 5146 NR_134510 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 516-184 chr4 430311 430804 + 2 NA intron (NR_002451, intron 2 of 2) AluSx|SINE|Alu 43652 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 850-43 chr6 145950167 145950934 + 2 NA intron (NM_001370328, intron 4 of 31) intron (NM_001370328, intron 4 of 31) 13547 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 542-20 chr10 43297189 43297661 + 2 NA Intergenic Intergenic -30360 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 686-65 chr5 88320760 88321395 + 2 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) 52061 NR_039994 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 462-90 chr15 56480059 56480330 + 2 NA Intergenic AluY|SINE|Alu -15057 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 307-226 chr2 34613999 34614162 + 2 NA Intergenic L1MC4|LINE|L1 -63477 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 192-31 chr10 130793500 130793654 + 2 NA Intergenic Intergenic 169091 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 388-31 chr1 223687520 223687845 + 2 NA Intergenic Intergenic -13911 NM_001146068 824 Hs.350899 NM_001748 ENSG00000162909 CAPN2 CANP2|CANPL2|CANPml|mCANP calpain 2 protein-coding 428-98 chr17 73905910 73906207 + 2 NA Intergenic L1ME4a|LINE|L1 -77521 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 250-219 chr2 118667263 118667444 + 2 NA Intergenic Intergenic -64387 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 455-107 chr18 69714794 69715128 + 2 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 232912 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 277-194 chr2 68434028 68434252 + 2 NA Intergenic Intergenic 33154 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 182-50 chr14 46869713 46869849 + 2 NA intron (NM_001113498, intron 14 of 16) MLT1F2|LTR|ERVL-MaLR -218000 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 275-196 chr2 76443721 76443977 + 2 NA Intergenic AluSz|SINE|Alu -542116 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 258-127 chr14 63910449 63910690 + 2 NA intron (NM_015180, intron 2 of 114) intron (NM_015180, intron 2 of 114) 57565 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 406-70 chr13 109432789 109433167 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 32282 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 754-28 chr16 72740643 72741295 + 2 NA Intergenic Intergenic -75999 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 373-433 chr9 72183978 72184338 + 2 NA intron (NM_001351571, intron 1 of 13) L1MC1|LINE|L1 34718 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 336-97 chr11 54823840 54824020 + 2 NA Intergenic ALR/Alpha|Satellite|centr 117098 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 555-177 chr6 82646541 82646905 + 2 NA Intergenic Intergenic 282479 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 526-134 chr2 114498227 114498635 + 2 NA intron (NM_001321908, intron 2 of 25) L1MA7|LINE|L1 36854 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 242-251 chr4 20159769 20159996 + 2 NA Intergenic MLT2B1|LTR|ERVL -92023 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 233-107 chr15 63595859 63596020 + 2 NA intron (NR_034080, intron 1 of 2) intron (NR_034080, intron 1 of 2) -1448 NM_001367808 283807 Hs.631163 NM_203373 ENSG00000197361 FBXL22 Fbl22 F-box and leucine rich repeat protein 22 protein-coding 271-456 chr8 123638004 123638261 + 2 NA Intergenic L2b|LINE|L2 15669 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 300-77 chr11 113565311 113565513 + 2 NA Intergenic Intergenic -90014 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 450-21 chr1 218871780 218872112 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 46565 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 474-23 chr1 218107825 218108252 + 2 NA Intergenic Intergenic 64533 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 224-152 chr2 116772482 116772664 + 2 NA Intergenic Intergenic -1042118 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 389-332 chr6 157499690 157500035 + 2 NA intron (NM_024630, intron 1 of 8) L2a|LINE|L2 -29270 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 249-355 chr6 62098893 62099076 + 2 NA intron (NR_146874, intron 2 of 13) L1MA6|LINE|L1 187241 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 222-28 chr10 4857651 4857801 + 2 NA Intergenic L1M3|LINE|L1 31519 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 220-394 chr9 108356462 108356585 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 499463 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 533-156 chr4 64676972 64677413 + 2 NA Intergenic HERVL-int|LTR|ERVL -267732 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 339-297 chr2 206997095 206997399 + 2 NA Intergenic L1MEf|LINE|L1 57729 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 324-522 chr8 62120443 62120656 + 2 NA Intergenic Intergenic -128305 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 278-8 chr1 80267610 80267761 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger -268070 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 388-71 chr11 119315692 119315960 + 2 NA intron (NM_006500, intron 1 of 15) intron (NM_006500, intron 1 of 15) 1304 NM_006500 4162 Hs.599039 NM_006500 ENSG00000076706 MCAM CD146|HEMCAM|METCAM|MUC18|MelCAM melanoma cell adhesion molecule protein-coding 407-284 chr7 16107771 16108115 + 2 NA intron (NM_001101426, intron 9 of 9) L1MA7|LINE|L1 -102543 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 599-26 chr12 3314242 3314784 + 2 NA intron (NR_148995, intron 1 of 11) intron (NR_148995, intron 1 of 11) 51609 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 599-64 chr2 167207527 167208016 + 2 NA intron (NM_001199144, intron 1 of 8) intron (NM_001199144, intron 1 of 8) 20399 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 256-23 chr1 181594121 181594257 + 2 NA intron (NM_001205293, intron 6 of 47) (AT)n|Simple_repeat|Simple_repeat 110672 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 220-63 chr10 122396246 122396397 + 2 NA intron (NM_001330178, intron 3 of 13) intron (NM_001330178, intron 3 of 13) 4018 NM_021622 59338 Hs.643512 NM_021622 ENSG00000107679 PLEKHA1 TAPP1 pleckstrin homology domain containing A1 protein-coding 350-370 chr4 156912941 156913254 + 2 NA intron (NR_036641, intron 1 of 6) intron (NR_036641, intron 1 of 6) 58702 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 272-295 chr4 35898422 35898686 + 2 NA Intergenic Intergenic 345385 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 423-265 chr7 43041770 43042182 + 2 NA Intergenic MER96B|DNA|hAT-Tip100 -70671 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 324-223 chr18 10363321 10363516 + 2 NA Intergenic Intergenic 50952 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 444-147 chr3 5547058 5547369 + 2 NA Intergenic L1M2a|LINE|L1 -296958 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 285-365 chr6 56942242 56942433 + 2 NA intron (NM_001144769, intron 2 of 96) L1MEf|LINE|L1 12493 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 356-208 chr18 46002139 46002453 + 2 NA intron (NM_024430, intron 6 of 14) L1MDa|LINE|L1 -34967 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 248-375 chr7 45303304 45303480 + 2 NA Intergenic L1MB5|LINE|L1 145601 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 399-48 chr11 15221836 15222063 + 2 NA intron (NM_001042536, intron 8 of 12) intron (NM_001042536, intron 8 of 12) 72847 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 240-388 chr6 168526581 168526800 + 2 NA intron (NM_001166412, intron 3 of 12) intron (NM_001166412, intron 3 of 12) 85506 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 599-46 chr18 3656688 3657132 + 2 NA intron (NM_001308390, intron 4 of 10) AluY|SINE|Alu 53173 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 236-281 chr5 36707582 36707795 + 2 NA Intergenic LTR67B|LTR|ERVL 101082 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 433-214 chr5 6281156 6281467 + 2 NA Intergenic Intergenic 55981 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 468-19 chr10 4695491 4695776 + 2 NA Intergenic Intergenic -17563 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 439-152 chr2 184137216 184137473 + 2 NA Intergenic L1PA12|LINE|L1 -241631 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 381-356 chr7 62857499 62857728 + 2 NA Intergenic ALR/Alpha|Satellite|centr 446443 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 287-146 chr15 83909517 83909691 + 2 NA intron (NM_207517, intron 15 of 29) L1ME1|LINE|L1 -170583 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 343-510 chr7 64878615 64878801 + 2 NA Intergenic Intergenic -24534 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 380-421 chr9 74063484 74063702 + 2 NA Intergenic Intergenic -307938 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 448-306 chrX 65114870 65115266 + 2 NA Intergenic L1PB1|LINE|L1 -80327 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 443-12 chr1 99123742 99124016 + 2 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -119018 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 291-356 chr5 67667164 67667428 + 2 NA Intergenic AluSz6|SINE|Alu -20507 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 348-292 chr3 43815102 43815325 + 2 NA Intergenic Intergenic -123619 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 390-403 chr8 134453054 134453402 + 2 NA Intergenic LTR33|LTR|ERVL -144843 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 243-414 chr7 33218383 33218616 + 2 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 88935 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 299-202 chr2 60157283 60157470 + 2 NA Intergenic L2b|LINE|L2 225660 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 222-137 chr17 63160627 63160776 + 2 NA intron (NM_025185, intron 4 of 25) L1ME4a|LINE|L1 194466 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 494-117 chr19 53203496 53203837 + 2 NA Intergenic Intergenic -9282 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 327-171 chr15 60812245 60812529 + 2 NA intron (NM_134261, intron 1 of 10) AluJr|SINE|Alu 130818 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 523-264 chr8 62160344 62160766 + 2 NA Intergenic Intergenic -88299 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 323-352 chr3 187311729 187311898 + 2 NA Intergenic Intergenic -19791 NM_001031849 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 258-427 chr9 97330682 97330871 + 2 NA intron (NM_001348010, intron 19 of 20) intron (NM_001348010, intron 19 of 20) 23117 NM_020893 100499483 Hs.435629 NM_020893 ENSG00000197816 CCDC180 C9orf174 coiled-coil domain containing 180 protein-coding 512-37 chr10 59345079 59345583 + 2 NA intron (NM_001347848, intron 4 of 15) intron (NM_001347848, intron 4 of 15) 17218 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 460-193 chr3 50467087 50467368 + 2 NA intron (NM_001291101, intron 2 of 37) intron (NM_001291101, intron 2 of 37) 36407 NM_006030 9254 Hs.476273 NM_006030 ENSG00000007402 CACNA2D2 CACNA2D calcium voltage-gated channel auxiliary subunit alpha2delta 2 protein-coding 230-39 chr10 44251285 44251463 + 2 NA Intergenic MIR|SINE|MIR -41376 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 962-16 chr3 122320153 122320692 + 2 NA Intergenic L1ME2|LINE|L1 -4826 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 298-488 chr8 144616192 144616382 + 2 NA intron (NM_001308208, intron 1 of 10) intron (NM_001308208, intron 1 of 10) -2784 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 697-34 chr16 27829505 27830035 + 2 NA intron (NM_001109763, intron 4 of 6) MIR|SINE|MIR 58387 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 414-218 chr3 140869826 140870222 + 2 NA Intergenic L3|LINE|CR1 -71812 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 822-39 chr22 50123541 50124104 + 2 NA intron (NM_018995, intron 10 of 26) L1MEc|LINE|L1 -23233 NM_001164106 54456 Hs.62880 NM_018995 ENSG00000073146 MOV10L1 CHAMP|DJ402G11.8 Mov10 like RISC complex RNA helicase 1 protein-coding 290-54 chr10 69103596 69103806 + 2 NA intron (NM_002727, intron 2 of 2) intron (NM_002727, intron 2 of 2) 15598 NM_002727 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 394-72 chr12 7032019 7032290 + 2 NA Intergenic Intergenic -13678 NM_005768 10162 Hs.655248 NM_005768 ENSG00000111684 LPCAT3 C3F|LPCAT|LPLAT 5|LPSAT|MBOAT5|OACT5|nessy lysophosphatidylcholine acyltransferase 3 protein-coding 545-78 chr15 57091811 57092284 + 2 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -127383 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 225-303 chr6 8594283 8594423 + 2 NA intron (NR_038980, intron 3 of 4) L1MA4|LINE|L1 -57856 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 251-62 chr12 24371085 24371260 + 2 NA intron (NM_152989, intron 2 of 17) MLT1E3|LTR|ERVL-MaLR 147901 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 394-243 chr4 86243969 86244306 + 2 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 110507 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 345-175 chr15 69752661 69752994 + 2 NA Intergenic Intergenic -82407 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 370-161 chr15 69971026 69971267 + 2 NA Intergenic Intergenic 108322 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 226-292 chr5 132616147 132616353 + 2 NA intron (NM_005732, intron 20 of 24) intron (NM_005732, intron 20 of 24) 25540 NR_132124 101927761 Hs.598812 NR_132124 ENSG00000223442 TH2LCRR TH2-LCR T helper type 2 locus control region associated RNA ncRNA 334-353 chr3 94312578 94312809 + 2 NA Intergenic Intergenic 249632 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 301-389 chr6 4578538 4578775 + 2 NA Intergenic L1MC4|LINE|L1 -31909 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 400-112 chr15 81241888 81242195 + 2 NA intron (NM_001352686, intron 2 of 18) L1MD1|LINE|L1 42565 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 395-283 chr5 162950312 162950630 + 2 NA Intergenic MIR3|SINE|MIR -487100 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 548-16 chr1 207129819 207130290 + 2 NA intron (NM_000715, intron 7 of 11) L1M4b|LINE|L1 25821 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 302-264 chr21 44749046 44749339 + 2 NA Intergenic Intergenic -37620 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|ECTD14|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding 355-363 chr4 57335644 57335963 + 2 NA Intergenic Intergenic -90069 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 337-95 chr11 83998456 83998653 + 2 NA intron (NM_001142699, intron 11 of 27) L1M2|LINE|L1 274726 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 152-54 chr2 158202002 158202085 + 2 NA intron (NM_138803, intron 11 of 13) L1MC4|LINE|L1 35393 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 292-236 chr2 162223318 162223604 + 2 NA intron (NM_004460, intron 6 of 25) intron (NM_004460, intron 6 of 25) 19984 NM_004460 2191 Hs.654370 NM_004460 ENSG00000078098 FAP DPPIV|FAPA|FAPalpha|SIMP fibroblast activation protein alpha protein-coding 479-46 chr12 101047605 101047987 + 2 NA intron (NM_001286616, intron 12 of 26) intron (NM_001286616, intron 12 of 26) -90762 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 362-315 chr4 88463530 88463808 + 2 NA intron (NM_016323, intron 5 of 22) intron (NM_016323, intron 5 of 22) 6550 NM_016323 51191 Hs.26663 NM_016323 ENSG00000138646 HERC5 CEB1|CEBP1 HECT and RLD domain containing E3 ubiquitin protein ligase 5 protein-coding 183-64 chr18 10677899 10678055 + 2 NA intron (NM_022068, intron 48 of 51) intron (NM_022068, intron 48 of 51) 16044 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 375-140 chr15 45880461 45880800 + 2 NA intron (NR_135680, intron 2 of 4) intron (NR_135680, intron 2 of 4) 175435 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 655-88 chr4 75353997 75354452 + 2 NA intron (NR_033964, intron 1 of 3) intron (NR_033964, intron 1 of 3) 148 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 411-71 chr12 74252549 74252814 + 2 NA intron (NR_038300, intron 3 of 6) intron (NR_038300, intron 3 of 6) 39950 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 229-373 chr7 126043491 126043688 + 2 NA Intergenic Intergenic -779298 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 274-301 chr5 9395609 9395789 + 2 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -115634 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 663-31 chr12 103411093 103411584 + 2 NA intron (NR_103526, intron 2 of 10) intron (NR_103526, intron 2 of 10) 84630 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 293-138 chr15 96780265 96780534 + 2 NA intron (NR_102754, intron 1 of 2) intron (NR_102754, intron 1 of 2) 1255 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 361-199 chr2 5271716 5272008 + 2 NA Intergenic MER105|DNA|hAT-Charlie 419256 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 333-359 chr3 102248667 102248902 + 2 NA Intergenic Intergenic 85079 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 320-60 chr10 59279399 59279648 + 2 NA intron (NM_001347852, intron 6 of 12) intron (NM_001347852, intron 6 of 12) 83026 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 675-26 chr14 32904286 32904831 + 2 NA Intergenic Intergenic -34321 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 298-31 chr1 241798799 241798974 + 2 NA intron (NM_001367482, intron 27 of 27) intron (NM_001367482, intron 27 of 27) -49305 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 202-261 chr8 126858662 126858853 + 2 NA Intergenic L1ME3G|LINE|L1 -154397 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 510-92 chr15 86353657 86354130 + 2 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -36925 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 473-93 chr15 26162059 26162353 + 2 NA Intergenic AluSq2|SINE|Alu 46393 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 239-114 chr14 97726971 97727191 + 2 NA Intergenic Intergenic 35750 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 348-135 chr14 45870335 45870544 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -154837 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 255-263 chr3 85600322 85600546 + 2 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 95375 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 353-521 chr8 67434052 67434352 + 2 NA exon (NM_020361, exon 9 of 11) exon (NM_020361, exon 9 of 11) 90368 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 485-253 chr6 159326153 159326519 + 2 NA Intergenic MIR1_Amn|SINE|MIR -57195 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 539-186 chr6 155465767 155466183 + 2 NA Intergenic LTR101_Mam|LTR|ERVL -10136 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 260-445 chr8 117433637 117433873 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -86958 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 485-198 chr4 31328349 31328626 + 2 NA Intergenic Intergenic 157343 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 551-206 chr8 50113938 50114268 + 2 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -50028 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 1147-8 chr9 106016928 106017915 + 2 NA Intergenic MIRc|SINE|MIR 322880 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 211-317 chr8 137876031 137876204 + 2 NA intron (NR_161374, intron 2 of 7) L1MEg|LINE|L1 207428 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 343-341 chr3 71262323 71262592 + 2 NA intron (NR_146142, intron 5 of 19) intron (NR_146142, intron 5 of 19) -17380 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 587-64 chr18 9818081 9818522 + 2 NA intron (NM_006868, intron 5 of 6) L1MB2|LINE|L1 -67672 NM_001098529 84203 Hs.98712 NM_032243 ENSG00000168454 TXNDC2 SPTRX|SPTRX1 thioredoxin domain containing 2 protein-coding 310-116 chr13 69259150 69259383 + 2 NA intron (NR_125752, intron 1 of 3) MER41B|LTR|ERV1 36920 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 270-286 chr5 8389349 8389518 + 2 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 68131 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 294-165 chr17 57619955 57620175 + 2 NA intron (NM_001322250, intron 9 of 13) intron (NM_001322250, intron 9 of 13) -11653 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 280-175 chr18 71532819 71533065 + 2 NA intron (NR_038325, intron 3 of 6) intron (NR_038325, intron 3 of 6) 46014 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 342-354 chr4 44820131 44820430 + 2 NA Intergenic Intergenic -93646 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 456-172 chr2 196397448 196397779 + 2 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) -35436 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 251-197 chr2 217545518 217545685 + 2 NA intron (NR_026597, intron 2 of 12) L1ME1|LINE|L1 210992 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 530-114 chr2 21729089 21729558 + 2 NA Intergenic Intergenic -18671 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 261-378 chr8 91688790 91689002 + 2 NA Intergenic L1MA9|LINE|L1 328784 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 298-518 chrX 88743565 88743819 + 2 NA Intergenic Intergenic -3533 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 185-63 chr14 84602861 84603007 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 -668998 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 405-102 chr16 62678814 62679072 + 2 NA Intergenic LTR10B|LTR|ERV1 -642505 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 371-142 chr17 5106983 5107219 + 2 NA intron (NM_001320955, intron 3 of 3) intron (NM_001320955, intron 3 of 3) -4834 NR_135658 101928000 Hs.660048 NR_135657 ENSG00000234327 LOC101928000 - uncharacterized LOC101928000 ncRNA 302-362 chr5 156692075 156692320 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -158098 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 273-440 chr8 50488259 50488464 + 2 NA intron (NR_135797, intron 8 of 20) MIRc|SINE|MIR 324230 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 317-50 chr10 57082667 57082946 + 2 NA Intergenic L1ME2z|LINE|L1 221753 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 370-207 chr19 56528670 56529017 + 2 NA 3' UTR (NM_020813, exon 5 of 5) 3' UTR (NM_020813, exon 5 of 5) -10105 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 286-445 chr8 55293673 55293921 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 161524 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 423-209 chr4 161306235 161306586 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -716323 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 288-21 chr1 112544748 112544921 + 2 NA intron (NM_138728, intron 12 of 13) intron (NM_138728, intron 12 of 13) 35869 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 146-86 chr7 108323793 108323885 + 2 NA intron (NM_001371131, intron 2 of 33) L2a|LINE|L2 4687 NM_001371180 176-77 chr22 25046779 25046942 + 2 NA intron (NM_001145206, intron 3 of 10) MER5B|DNA|hAT-Charlie 18886 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 234-14 chr1 114991071 114991215 + 2 NA intron (NR_104211, intron 31 of 32) intron (NR_104211, intron 31 of 32) -38681 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 189-24 chr10 109621623 109621798 + 2 NA Intergenic Intergenic 301536 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 339-227 chr18 8978890 8979180 + 2 NA Intergenic Intergenic -123664 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 472-181 chr2 238605394 238605859 + 2 NA Intergenic L1MEd|LINE|L1 -50127 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 247-148 chr16 52211300 52211540 + 2 NA Intergenic Intergenic -47144 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 581-82 chr2 113006289 113006847 + 2 NA intron (NM_014440, intron 2 of 3) intron (NM_014440, intron 2 of 3) 1109 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 315-338 chr4 54925928 54926236 + 2 NA Intergenic MLT2C2|LTR|ERVL 199513 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 355-197 chr17 60490394 60490691 + 2 NA intron (NM_006380, intron 3 of 12) AluJb|SINE|Alu 35698 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 412-304 chr7 29358276 29358591 + 2 NA intron (NM_001293071, intron 2 of 11) intron (NM_001293071, intron 2 of 11) -121279 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 374-75 chr12 92718189 92718409 + 2 NA Intergenic Intergenic 15310 NM_001178097 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 450-243 chr5 74056997 74057338 + 2 NA Intergenic L1ME3F|LINE|L1 243621 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 561-54 chr13 32860191 32860569 + 2 NA intron (NR_047020, intron 4 of 4) intron (NR_047020, intron 4 of 4) 51272 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 207-269 chr7 47750098 47750251 + 2 NA Intergenic Intergenic -11302 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 504-100 chr17 35381786 35382161 + 2 NA Intergenic LTR2|LTR|ERV1 -8352 NM_001104589 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 220-93 chr12 89088956 89089153 + 2 NA Intergenic MIRb|SINE|MIR -69362 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 299-27 chr1 180708242 180708488 + 2 NA intron (NR_137330, intron 2 of 12) L1MB4|LINE|L1 76343 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 271-373 chr6 45361038 45361271 + 2 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 16364 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 352-32 chr1 231441142 231441388 + 2 NA Intergenic Intergenic -16221 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 434-18 chr1 152809280 152809651 + 2 NA Intergenic L1ME3C|LINE|L1 -2506 NM_178349 353132 Hs.375103 NM_178349 ENSG00000196734 LCE1B LEP2|SPRL2A late cornified envelope 1B protein-coding 253-79 chr11 84980268 84980500 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -56963 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 260-153 chr15 96926132 96926283 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 142772 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 381-44 chr10 39311960 39312176 + 2 NA Intergenic ALR/Alpha|Satellite|centr 615472 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 321-368 chr3 49141373 49141544 + 2 NA Intergenic Intergenic -8408 NM_002292 3913 Hs.439726 NM_002292 ENSG00000172037 LAMB2 LAMS|NPHS5 laminin subunit beta 2 protein-coding 349-485 chr8 6000318 6000557 + 2 NA Intergenic Intergenic 406111 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 554-22 chr1 241711298 241711719 + 2 NA intron (NM_001367482, intron 8 of 27) intron (NM_001367482, intron 8 of 27) 59227 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 287-17 chr1 106547071 106547328 + 2 NA Intergenic MIRb|SINE|MIR -271040 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 336-312 chr2 241589352 241589629 + 2 NA intron (NM_001164356, intron 4 of 4) L1MB7|LINE|L1 28011 NM_001164356 51078 Hs.435759 NM_015963 ENSG00000176946 THAP4 CGI-36|Nb(III)|PP238 THAP domain containing 4 protein-coding 301-366 chr5 119646788 119647002 + 2 NA Intergenic Intergenic 17336 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 223-335 chr8 46077997 46078214 + 2 NA Intergenic ALR/Alpha|Satellite|centr 539538 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 491-22 chr10 76511742 76512064 + 2 NA intron (NM_001305581, intron 6 of 6) L1M4|LINE|L1 -376141 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 475-95 chr16 25996553 25996885 + 2 NA intron (NM_006040, intron 1 of 1) L1M5|LINE|L1 -28518 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 258-428 chr9 104677933 104678135 + 2 NA Intergenic Intergenic -16388 NM_001004484 286365 Hs.553683 NM_001004484 ENSG00000179055 OR13D1 OR9-15 olfactory receptor family 13 subfamily D member 1 protein-coding 546-191 chr5 75294478 75294905 + 2 NA Intergenic AluSp|SINE|Alu -42477 NM_001364187 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 259-366 chr7 22980857 22981063 + 2 NA intron (NM_032581, intron 3 of 10) L2a|LINE|L2 33170 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 324-7 chr1 40475939 40476215 + 2 NA Intergenic L1MEg|LINE|L1 -1213 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 410-305 chr8 63850835 63851067 + 2 NA Intergenic Intergenic 81521 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 188-116 chr21 27234007 27234109 + 2 NA Intergenic Intergenic -266970 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 522-44 chr11 48313995 48314335 + 2 NA Intergenic L1M1|LINE|L1 7942 NM_001004725 256148 Hs.553657 NM_001004725 ENSG00000176555 OR4S1 OR11-100 olfactory receptor family 4 subfamily S member 1 protein-coding 611-15 chr10 74855719 74856224 + 2 NA intron (NM_001370144, intron 3 of 15) L1MC4|LINE|L1 29371 NM_001370144 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 303-138 chr14 101265756 101266046 + 2 NA Intergenic L1MEf|LINE|L1 142021 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 267-274 chr3 178129313 178129522 + 2 NA Intergenic Intergenic -289784 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 258-349 chr6 115701194 115701366 + 2 NA Intergenic L1MA8|LINE|L1 -57445 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 388-291 chr5 124337542 124337806 + 2 NA intron (NR_125774, intron 4 of 5) MSTD|LTR|ERVL-MaLR 100846 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 538-163 chr4 4963784 4964304 + 2 NA intron (NR_125893, intron 2 of 2) MSTA|LTR|ERVL-MaLR 43236 NR_125893 101928306 Hs.543743 NR_125893 LOC101928306 - uncharacterized LOC101928306 ncRNA 478-118 chr17 60981466 60981867 + 2 NA intron (NM_001330413, intron 14 of 25) MIR|SINE|MIR 303815 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 476-39 chr10 118127312 118127744 + 2 NA intron (NR_026940, intron 3 of 3) L2|LINE|L2 -80587 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 323-138 chr14 39885248 39885466 + 2 NA Intergenic L1M1|LINE|L1 -452857 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 410-325 chr9 5078124 5078461 + 2 NA intron (NM_004972, intron 15 of 24) intron (NM_004972, intron 15 of 24) 36599 NM_001322204 3717 Hs.656213 NM_004972 ENSG00000096968 JAK2 JTK10|THCYT3 Janus kinase 2 protein-coding 405-158 chr2 147708498 147708755 + 2 NA Intergenic Intergenic -135891 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 323-545 chr8 82431900 82432148 + 2 NA Intergenic Intergenic -480080 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 694-38 chr14 49502914 49503450 + 2 NA Intergenic AluSz6|SINE|Alu 83198 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 492-30 chr10 106114484 106114841 + 2 NA Intergenic L1PA10|LINE|L1 -25503 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 226-2 chr1 22359833 22359993 + 2 NA Intergenic L2a|LINE|L2 -91938 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 376-424 chr9 69262765 69263111 + 2 NA Intergenic LTR37B|LTR|ERV1 44118 NR_047671 100885775 Hs.49768 NR_047671 ENSG00000278910 BANCR LINC00586 BRAF-activated non-protein coding RNA ncRNA 447-188 chr3 194593384 194593683 + 2 NA intron (NM_138399, intron 9 of 10) intron (NM_138399, intron 9 of 10) 9265 NR_047575 100507297 Hs.586059 NR_047573 TMEM44-AS1 - TMEM44 antisense RNA 1 ncRNA 318-168 chr14 56110195 56110465 + 2 NA Intergenic L1MB1|LINE|L1 -8081 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 625-124 chr8 141807325 141807710 + 2 NA Intergenic Intergenic -21204 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 170-74 chr2 155429174 155429307 + 2 NA Intergenic Intergenic 730545 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 224-58 chr11 130741995 130742161 + 2 NA Intergenic Intergenic 69122 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 242-317 chr5 110325645 110325785 + 2 NA Intergenic Intergenic 188200 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 304-225 chr19 47827084 47827287 + 2 NA intron (NM_000554, intron 1 of 3) intron (NM_000554, intron 1 of 3) 5248 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 304-475 chr6 164282476 164282683 + 2 NA Intergenic Intergenic 539484 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 198-217 chr6 84471097 84471224 + 2 NA intron (NR_132100, intron 1 of 4) L1M4|LINE|L1 3769 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 834-44 chr7 68385760 68386455 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 365854 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 368-85 chr11 88088087 88088350 + 2 NA Intergenic MER66-int|LTR|ERV1 87225 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 363-402 chr7 10804429 10804665 + 2 NA Intergenic Intergenic -24603 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 281-143 chr16 12931078 12931336 + 2 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 29609 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 286-363 chr5 110378203 110378476 + 2 NA Intergenic 7SK|RNA|RNA 135576 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 346-215 chr19 29497834 29498151 + 2 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 27760 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 436-63 chr12 40413655 40414054 + 2 NA intron (NM_173600, intron 6 of 173) intron (NM_173600, intron 6 of 173) 20460 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 388-339 chr8 52488113 52488389 + 2 NA Intergenic L1PA15|LINE|L1 77179 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 345-464 chr6 45761141 45761401 + 2 NA Intergenic Intergenic 176326 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 578-21 chr1 241402266 241402698 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -45252 NM_002924 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 636-142 chr8 48718775 48719384 + 2 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 16189 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 249-466 chrX 63528104 63528337 + 2 NA intron (NR_152610, intron 1 of 4) L1MA4A|LINE|L1 32875 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 317-129 chr13 91025357 91025614 + 2 NA Intergenic Intergenic 64132 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 524-263 chr8 108386133 108386493 + 2 NA Intergenic HAL1|LINE|L1 -57270 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 222-280 chr4 177967573 177967791 + 2 NA intron (NR_028342, intron 4 of 5) intron (NR_028342, intron 4 of 5) -59746 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 226-94 chr14 62914367 62914591 + 2 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 130979 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 249-99 chr13 20899923 20900081 + 2 NA intron (NM_022459, intron 1 of 22) MIRb|SINE|MIR 2772 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 309-163 chr14 87138083 87138319 + 2 NA Intergenic L1ME2|LINE|L1 232423 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 132-48 chr3 5779976 5780081 + 2 NA Intergenic Intergenic -529773 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 372-188 chr17 61648000 61648254 + 2 NA Intergenic AluSx3|SINE|Alu -56908 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 152-82 chr6 51295760 51295904 + 2 NA Intergenic Intergenic -326038 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 223-334 chr8 43629992 43630146 + 2 NA Intergenic ALR/Alpha|Satellite|centr 337627 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 758-61 chr4 183881640 183882237 + 2 NA intron (NR_132761, intron 1 of 2) intron (NR_132761, intron 1 of 2) -23369 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 211-259 chr6 73577789 73577994 + 2 NA Intergenic L2c|LINE|L2 -56859 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 220-80 chr12 13774585 13774752 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 205688 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 227-373 chr8 99755060 99755216 + 2 NA intron (NM_017890, intron 39 of 61) L1M4|LINE|L1 138569 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 325-323 chr21 32232387 32232589 + 2 NA Intergenic L1M3|LINE|L1 46561 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 256-446 chr9 19898961 19899159 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -112041 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 190-171 chr8 18371564 18371696 + 2 NA Intergenic L1MC5|LINE|L1 -19652 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 355-117 chr11 133292143 133292391 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 240234 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 301-233 chr2 172661802 172662021 + 2 NA Intergenic L1PA16|LINE|L1 -73934 NM_007023 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 300-34 chr10 18782361 18782630 + 2 NA Intergenic Intergenic 123064 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 479-35 chr11 29085819 29086146 + 2 NA Intergenic Intergenic -508431 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 369-253 chr21 45756173 45756414 + 2 NA intron (NM_001348243, intron 3 of 15) L1ME1|LINE|L1 8279 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 220-245 chr3 179947259 179947426 + 2 NA intron (NM_001349396, intron 1 of 13) MIRb|SINE|MIR 26883 NM_001349406 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 223-198 chr22 33516937 33517121 + 2 NA intron (NM_133642, intron 6 of 14) Tigger19a|DNA|TcMar-Tigger -80360 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 400-99 chr14 78895904 78896200 + 2 NA intron (NM_004796, intron 7 of 16) Tigger1|DNA|TcMar-Tigger -303930 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 480-34 chr10 79992048 79992365 + 2 NA Intergenic L1PA14|LINE|L1 -43101 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 152-3 chr1 59059368 59059460 + 2 NA intron (NR_110626, intron 2 of 2) MIRc|SINE|MIR 38938 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 296-490 chr8 135873042 135873252 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 415691 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 291-68 chr11 19624901 19625088 + 2 NA intron (NM_001111018, intron 1 of 37) L1MA5A|LINE|L1 49684 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 453-114 chr2 82410697 82411114 + 2 NA Intergenic Intergenic -445898 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 546-210 chr6 82173505 82173983 + 2 NA intron (NM_015525, intron 26 of 28).2 intron (NM_015525, intron 26 of 28).2 -71979 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 347-509 chr8 79961572 79961882 + 2 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 68532 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 224-255 chr5 71654507 71654684 + 2 NA intron (NM_022132, intron 16 of 16) intron (NM_022132, intron 16 of 16) -64680 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 477-220 chr4 37339696 37340014 + 2 NA intron (NM_001144990, intron 2 of 6) L1PB4|LINE|L1 95112 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 269-262 chr4 12212895 12213093 + 2 NA Intergenic Intergenic -10457 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 337-94 chr11 68068397 68068617 + 2 NA intron (NM_001277, intron 7 of 11) AluJo|SINE|Alu 23713 NR_106811 102465451 NR_106811 ENSG00000275022 MIR6753 hsa-mir-6753 microRNA 6753 ncRNA 339-214 chr17 61733336 61733546 + 2 NA intron (NM_032043, intron 16 of 19) intron (NM_032043, intron 16 of 19) 130118 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 608-126 chr5 111018610 111019117 + 2 NA Intergenic Intergenic -51217 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 336-555 chr8 121932846 121933172 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -291569 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 311-445 chr6 129012669 129012878 + 2 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 129632 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 244-153 chr2 29665590 29665734 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -190285 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 345-252 chr2 56526554 56526831 + 2 NA Intergenic L2a|LINE|L2 -340922 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 279-414 chr8 58992211 58992391 + 2 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 126846 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 374-242 chr3 35134942 35135311 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 258897 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 367-403 chr6 153841778 153842126 + 2 NA Intergenic Intergenic -168544 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 238-154 chr18 73216190 73216379 + 2 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 48214 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 277-106 chr14 27165457 27165726 + 2 NA Intergenic L1MB7|LINE|L1 256949 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 217-286 chr5 15428434 15428597 + 2 NA Intergenic L1MD1|LINE|L1 -71665 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 298-84 chr11 112405106 112405379 + 2 NA Intergenic L2b|LINE|L2 -76990 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 302-242 chr2 202743827 202743996 + 2 NA intron (NM_173511, intron 4 of 7) L1M2|LINE|L1 85323 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 242-404 chr8 114393325 114393541 + 2 NA Intergenic Intergenic -956494 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 289-188 chr18 37920470 37920657 + 2 NA Intergenic L1MD2|LINE|L1 263428 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 302-145 chr15 63969791 63969961 + 2 NA intron (NM_014326, intron 4 of 11) intron (NM_014326, intron 4 of 11) 41602 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 209-94 chr14 68114771 68114931 + 2 NA intron (NM_133509, intron 7 of 10) MIRb|SINE|MIR 291259 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 195-239 chr8 87513033 87513197 + 2 NA Intergenic Intergenic 360900 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 630-112 chr5 141315996 141316497 + 2 NA Intergenic AluSx1|SINE|Alu 4538 NM_005642 6879 Hs.438838 NM_005642 ENSG00000178913 TAF7 TAF2F|TAFII55 TATA-box binding protein associated factor 7 protein-coding 482-253 chr7 72506665 72507033 + 2 NA Intergenic AluJr|SINE|Alu -59706 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 452-116 chr19 53646918 53647231 + 2 NA Intergenic AluSx|SINE|Alu 15018 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 591-47 chr16 12511851 12512377 + 2 NA intron (NM_032167, intron 19 of 20) intron (NM_032167, intron 19 of 20) -208207 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 416-244 chr4 37499589 37499915 + 2 NA intron (NM_001104629, intron 1 of 3) L1PB1|LINE|L1 45827 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 403-248 chr5 54850339 54850687 + 2 NA Intergenic Intergenic -106255 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 403-169 chr2 178981397 178981639 + 2 NA intron (NM_001316745, intron 2 of 11) L1MC|LINE|L1 68619 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 394-14 chr1 95207997 95208308 + 2 NA intron (NR_125949, intron 2 of 3) intron (NR_125949, intron 2 of 3) 25830 NR_125949 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 719-76 chr7 133207529 133208047 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -45279 NM_001037126 60412 Hs.321273 NM_021807 ENSG00000131558 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 455-297 chr9 35351197 35351607 + 2 NA 5' UTR (NM_001371187, exon 2 of 33) 5' UTR (NM_001371187, exon 2 of 33) 9506 NM_001371187 225-57 chr11 48667661 48667824 + 2 NA Intergenic ALR/Alpha|Satellite|centr 178949 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 742-81 chr8 139959724 139960189 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 140579 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 311-268 chr2 121801509 121801786 + 2 NA Intergenic Intergenic 45996 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 271-341 chr5 44979805 44980055 + 2 NA Intergenic L1PA16|LINE|L1 170983 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 251-418 chr9 87329183 87329363 + 2 NA Intergenic Intergenic -167955 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 524-235 chr7 39281815 39282184 + 2 NA intron (NM_001370959, intron 4 of 9) L1MA6|LINE|L1 47135 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 263-452 chr9 93717564 93717794 + 2 NA Intergenic L1MB5|LINE|L1 -101678 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 187-18 chr1 222042521 222042693 + 2 NA Intergenic Intergenic -64087 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 373-53 chr10 56963386 56963693 + 2 NA Intergenic L1PA16|LINE|L1 341020 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 334-179 chr15 79109195 79109512 + 2 NA Intergenic L1MD1|LINE|L1 -18573 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 380-408 chr8 126989486 126989808 + 2 NA Intergenic Intergenic -23507 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 436-79 chr14 20011936 20012294 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 3078 NM_001004712 122740 Hs.626814 NM_001004712 ENSG00000169484 OR4K14 OR14-18|OR14-22 olfactory receptor family 4 subfamily K member 14 protein-coding 360-303 chr3 80720664 80720995 + 2 NA Intergenic Intergenic -44068 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 508-220 chr7 30613943 30614306 + 2 NA intron (NM_002047, intron 8 of 16) L1MA9|LINE|L1 19246 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 728-54 chr20 7102475 7103120 + 2 NA Intergenic L1MA1|LINE|L1 151405 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 583-140 chr5 150895251 150895641 + 2 NA exon (NM_001172832, exon 5 of 5) exon (NM_001172832, exon 5 of 5) 9537 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 390-420 chr9 88866171 88866439 + 2 NA Intergenic Intergenic -120400 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 533-181 chr5 56432904 56433326 + 2 NA Intergenic Intergenic 48654 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 293-208 chr2 154565085 154565339 + 2 NA Intergenic L1MA4|LINE|L1 -107774 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 203-52 chr13 62519763 62519897 + 2 NA Intergenic LTR40a|LTR|ERVL 196173 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 699-9 chr10 75345936 75346372 + 2 NA intron (NR_038226, intron 2 of 3) MIR|SINE|MIR 49771 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 332-22 chr1 110439836 110440100 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -11181 NM_032414 84432 Hs.514793 NM_032414 ENSG00000143125 PROK1 EGVEGF|PK1|PRK1 prokineticin 1 protein-coding 724-93 chr7 54887467 54888147 + 2 NA Intergenic Intergenic 128494 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 374-143 chr17 38999816 39000173 + 2 NA Intergenic Intergenic 27116 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 371-219 chr20 40582302 40582670 + 2 NA Intergenic L2b|LINE|L2 106750 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 161-59 chr2 162721430 162721527 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -47458 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 181-85 chr21 21854185 21854299 + 2 NA Intergenic Intergenic 107257 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 519-221 chr7 145991858 145992240 + 2 NA Intergenic Intergenic -782222 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 306-141 chr14 34254550 34254821 + 2 NA Intergenic Intergenic 207555 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 271-50 chr10 66585765 66585979 + 2 NA intron (NM_001127384, intron 10 of 17) L1PB3|LINE|L1 -340164 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 510-40 chr11 23350722 23351204 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 68227 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 220-112 chr14 84414756 84414930 + 2 NA Intergenic L1MA5|LINE|L1 -857089 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 536-190 chr5 155647357 155647731 + 2 NA Intergenic Intergenic 633789 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 515-248 chr7 51822325 51822723 + 2 NA Intergenic MIR|SINE|MIR -429268 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 414-40 chr11 15746856 15747130 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 103108 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 377-378 chr7 85465937 85466194 + 2 NA intron (NR_134240, intron 2 of 3) L1M5|LINE|L1 44943 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 297-179 chr18 3742052 3742295 + 2 NA intron (NM_001242762, intron 3 of 9) intron (NM_001242762, intron 3 of 9) 103185 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 293-141 chr16 35443728 35443986 + 2 NA Intergenic AluSx|SINE|Alu 36739 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 573-37 chr11 41161262 41161663 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 298174 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 380-87 chr12 16817679 16817889 + 2 NA Intergenic L1MB4|LINE|L1 -170963 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 457-145 chr20 55648492 55648861 + 2 NA Intergenic Intergenic -221479 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 392-257 chr5 114198370 114198574 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -163598 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 893-35 chr5 3399911 3400516 + 2 NA Intergenic MIRb|SINE|MIR -52603 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 284-180 chr19 32536736 32537010 + 2 NA Intergenic Intergenic -44317 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 419-106 chr16 52934491 52934895 + 2 NA Intergenic MIR|SINE|MIR 118180 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 195-162 chr4 39735098 39735245 + 2 NA intron (NM_001111113, intron 1 of 4) intron (NM_001111113, intron 1 of 4) 37035 NM_001312646 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 457-125 chr2 137326798 137327141 + 2 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 561424 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 157-37 chr14 50800233 50800358 + 2 NA intron (NM_016350, intron 4 of 28) Tigger4a|DNA|TcMar-Tigger -21502 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 357-98 chr13 80135139 80135384 + 2 NA Intergenic L1M3|LINE|L1 124184 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 420-102 chr17 63135726 63136080 + 2 NA intron (NM_025185, intron 4 of 25) intron (NM_025185, intron 4 of 25) 169668 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 235-150 chr19 12455636 12455854 + 2 NA Intergenic Intergenic -14724 NM_005815 10224 Hs.636894 NM_005815 ENSG00000180855 ZNF443 ZK1 zinc finger protein 443 protein-coding 273-245 chr2 204304010 204304207 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -241367 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 274-87 chr12 5386479 5386722 + 2 NA Intergenic L2c|LINE|L2 -45508 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 387-385 chr9 24155891 24156175 + 2 NA Intergenic Intergenic -305432 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 243-246 chr2 209169136 209169323 + 2 NA Intergenic HAL1b|LINE|L1 -254818 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 455-177 chr3 185059458 185059745 + 2 NA Intergenic L1MA5A|LINE|L1 93459 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 275-129 chr16 59668093 59668316 + 2 NA Intergenic L1M5|LINE|L1 86987 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 241-168 chr19 52388311 52388472 + 2 NA TTS (NR_125345) TTS (NR_125345) 9366 NR_125345 102724105 Hs.188680 NR_125345 ENSG00000269834 ZNF528-AS1 - ZNF528 antisense RNA 1 ncRNA 241-162 chr19 30001548 30001716 + 2 NA intron (NM_001252641, intron 4 of 10) intron (NM_001252641, intron 4 of 10) 59393 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 299-76 chr11 29952166 29952385 + 2 NA Intergenic L1PA13|LINE|L1 30118 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 288-7 chr1 37157175 37157441 + 2 NA Intergenic Intergenic -4255 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 218-286 chr6 52721767 52721964 + 2 NA Intergenic Intergenic 23294 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 426-105 chr17 71348779 71349051 + 2 NA Intergenic Intergenic -146736 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 584-43 chr14 60884209 60884656 + 2 NA intron (NM_001177963, intron 6 of 6) L1MA2|LINE|L1 96647 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 217-234 chr3 117320836 117320997 + 2 NA Intergenic L1M3d|LINE|L1 370009 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 193-155 chr4 73779288 73779449 + 2 NA Intergenic AluSp|SINE|Alu 38799 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 266-199 chr2 161028667 161028849 + 2 NA Intergenic L2c|LINE|L2 -108197 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 282-476 chr8 144899712 144899914 + 2 NA intron (NM_001363102, intron 1 of 6) L1M5|LINE|L1 492 NM_001363103 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 178-4 chr1 64097334 64097443 + 2 NA intron (NR_110666, intron 5 of 5) MLT1D|LTR|ERVL-MaLR 14817 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 150-21 chr11 77777164 77777252 + 2 NA intron (NM_016578, intron 1 of 15) L1MC5|LINE|L1 43626 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 492-36 chr11 37946071 37946374 + 2 NA intron (NR_135110, intron 1 of 2) L1PB4|LINE|L1 7621 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 918-27 chr8 99920218 99921026 + 2 NA Intergenic L1MEg|LINE|L1 -26915 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 564-191 chr7 80727298 80727714 + 2 NA Intergenic Intergenic 80853 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 118-6 chr10 29890772 29890872 + 2 NA Intergenic LTR37-int|LTR|ERV1 -153886 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 562-98 chr2 19790492 19790851 + 2 NA Intergenic Intergenic -78183 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 308-154 chr15 27551499 27551794 + 2 NA Intergenic MER67B|LTR|ERV1 -390327 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 467-153 chr20 42807283 42807608 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) 121962 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 197-44 chr11 81765548 81765707 + 2 NA Intergenic L1MC5|LINE|L1 125209 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 384-82 chr12 63112916 63113257 + 2 NA Intergenic L1MC3|LINE|L1 39724 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 379-312 chr7 17397737 17398032 + 2 NA intron (NR_110015, intron 1 of 2) (TGTGAA)n|Simple_repeat|Simple_repeat 22967 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 676-119 chr9 40927839 40928251 + 2 NA TTS (NR_031629) TTS (NR_031629) 1047 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 263-146 chr16 78521699 78521928 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 422159 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 218-102 chr15 36654096 36654280 + 2 NA intron (NM_032499, intron 5 of 11) intron (NM_032499, intron 5 of 11) 59311 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 215-214 chr4 31610753 31610901 + 2 NA Intergenic Intergenic 104283 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 306-277 chr20 25649049 25649230 + 2 NA intron (NR_126465, intron 2 of 3) L1MA4|LINE|L1 24914 NR_126467 102724826 Hs.633621 NR_126465 ENSG00000213742 ZNF337-AS1 - ZNF337 antisense RNA 1 ncRNA 233-130 chr17 61083123 61083272 + 2 NA intron (NM_001330413, intron 22 of 25) intron (NM_001330413, intron 22 of 25) 284507 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 306-420 chr6 4106783 4107086 + 2 NA intron (NM_001085401, intron 3 of 5) L1MB1|LINE|L1 27725 NR_104464 404220 Hs.716731 NM_206834 ENSG00000185689 C6orf201 dJ1013A10.5 chromosome 6 open reading frame 201 protein-coding 424-159 chr20 19519459 19519844 + 2 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -235055 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 242-28 chr1 242227733 242227893 + 2 NA intron (NM_001320272, intron 5 of 10) MamRTE1|LINE|RTE-BovB 221655 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 540-191 chr7 16401879 16402246 + 2 NA intron (NM_001101426, intron 2 of 9) L1MEd|LINE|L1 19476 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 611-36 chr14 36262401 36262765 + 2 NA Intergenic L1M6|LINE|L1 58054 NM_016586 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 728-10 chr1 241001675 241002255 + 2 NA intron (NM_001350116, intron 3 of 16) L1MC1|LINE|L1 -130307 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 246-129 chr15 50080483 50080632 + 2 NA intron (NR_073597, intron 2 of 26) L4_A_Mam|LINE|RTE-X 32822 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 176-33 chr15 58531266 58531408 + 2 NA intron (NM_000236, intron 1 of 8) intron (NM_000236, intron 1 of 8) -32602 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 592-171 chr8 61875143 61875698 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -14419 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 212-124 chr18 4866804 4866963 + 2 NA Intergenic L1MEf|LINE|L1 -214299 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 219-280 chr5 55790909 55791073 + 2 NA intron (NM_024415, intron 16 of 21) MIRb|SINE|MIR 24106 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 259-375 chr7 113264631 113264806 + 2 NA Intergenic L1MA9|LINE|L1 -146136 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 508-22 chr10 11197541 11197969 + 2 NA intron (NM_001326339, intron 2 of 11) intron (NM_001326339, intron 2 of 11) 32725 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 373-309 chr5 12955386 12955672 + 2 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 77357 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 360-309 chr3 103442981 103443316 + 2 NA Intergenic Intergenic 80968 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 314-365 chr3 21348546 21348824 + 2 NA Intergenic Intergenic -57041 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 377-247 chr20 42554612 42554910 + 2 NA intron (NM_133170, intron 7 of 31) Tigger8|DNA|TcMar-Tigger -130722 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 279-213 chr2 233992243 233992410 + 2 NA intron (NM_024080, intron 21 of 25) intron (NM_024080, intron 21 of 25) -58376 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 505-120 chr18 66634341 66634775 + 2 NA Intergenic MIR|SINE|MIR -30468 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 497-155 chr20 42956734 42957111 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -11821 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 257-187 chr2 58876691 58876906 + 2 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -340910 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 378-30 chr1 177765675 177766033 + 2 NA Intergenic L1MEi|LINE|L1 65330 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 290-334 chr5 31456527 31456789 + 2 NA intron (NM_013235, intron 19 of 34) L1M8|LINE|L1 75435 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 271-412 chr7 92170159 92170332 + 2 NA intron (NR_122110, intron 2 of 2) L1MA4|LINE|L1 -4969 NM_001161528 401387 Hs.671729 NM_001045475 ENSG00000240720 LRRD1 - leucine rich repeats and death domain containing 1 protein-coding 314-451 chr5 23895784 23896079 + 2 NA Intergenic ALR/Alpha|Satellite|centr -55417 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 434-36 chr10 69608993 69609275 + 2 NA Intergenic L1MD1|LINE|L1 -21113 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 434-193 chr3 122876018 122876305 + 2 NA intron (NM_032839, intron 8 of 8) intron (NM_032839, intron 8 of 8) -10352 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 535-193 chr5 4167842 4168199 + 2 NA Intergenic Intergenic 572188 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 545-16 chr10 17090421 17090825 + 2 NA intron (NM_001081, intron 14 of 66) L1MC5a|LINE|L1 39194 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 588-103 chr3 116955790 116956315 + 2 NA Intergenic Intergenic 34621 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 321-340 chr20 59919339 59919572 + 2 NA intron (NM_014258, intron 6 of 44) intron (NM_014258, intron 6 of 44) 14182 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 251-47 chr11 5440699 5440869 + 2 NA exon (NM_001005288, exon 1 of 1) exon (NM_001005288, exon 1 of 1) 769 NM_001005288 390063 Hs.553732 NM_001005288 ENSG00000167359 OR51I1 - olfactory receptor family 51 subfamily I member 1 protein-coding 284-406 chr8 86262860 86263061 + 2 NA Intergenic MER21C|LTR|ERVL -32579 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 468-293 chr7 34024432 34024782 + 2 NA intron (NM_133468, intron 7 of 15) HAL1|LINE|L1 119068 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 341-105 chr12 11497521 11497787 + 2 NA Intergenic Intergenic -10976 NR_148969 440084 Hs.121321 NR_148969 LOC440084 - uncharacterized LOC440084 ncRNA 454-19 chr10 19277276 19277658 + 2 NA intron (NM_001142308, intron 19 of 39) LTR79|LTR|ERVL 228666 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 405-122 chr19 9542042 9542341 + 2 NA Intergenic HERVH-int|LTR|ERV1 3525 NR_134921 101928238 Hs.324978 NR_134920 ENSG00000278611 ZNF426-DT - ZNF426 divergent transcript ncRNA 394-273 chr5 97903794 97904099 + 2 NA intron (NR_146299, intron 2 of 2) L1MCb|LINE|L1 63188 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 333-50 chr10 34014346 34014543 + 2 NA Intergenic AluJr|SINE|Alu -241764 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 403-119 chr16 26874085 26874425 + 2 NA Intergenic MIR|SINE|MIR -192672 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 527-255 chr7 144135006 144135324 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie 6052 NM_001001659 135941 Hs.534547 NM_001001659 ENSG00000221938 OR2A14 OR2A14P|OR2A6|OST182 olfactory receptor family 2 subfamily A member 14 protein-coding 373-100 chr13 43858846 43859079 + 2 NA intron (NM_144974, intron 5 of 6) intron (NM_144974, intron 5 of 6) -20216 NM_001128303 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 584-128 chr5 13574056 13574472 + 2 NA Intergenic Intergenic 370216 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 277-157 chr18 2694981 2695159 + 2 NA intron (NM_015295, intron 8 of 47) L2a|LINE|L2 39183 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 252-109 chr14 21357919 21358137 + 2 NA intron (NM_007192, intron 20 of 25) intron (NM_007192, intron 20 of 25) 25991 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 408-36 chr10 20442258 20442620 + 2 NA Intergenic Intergenic -109531 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 484-293 chrX 111425236 111425556 + 2 NA Intergenic Intergenic -13204 NM_001369373 1641 Hs.34780 NM_000555 ENSG00000077279 DCX DBCN|DC|LISX|SCLH|XLIS doublecortin protein-coding 482-223 chr6 48398942 48399239 + 2 NA Intergenic MIRb|SINE|MIR -330401 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 307-402 chr5 143715715 143715979 + 2 NA Intergenic Intergenic 35987 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 407-20 chr1 217155710 217155995 + 2 NA Intergenic MamRep1151|LTR?|LTR? -18150 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 340-459 chr5 106706664 106706908 + 2 NA Intergenic HAL1|LINE|L1 304228 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 212-12 chr1 115768028 115768230 + 2 NA intron (NM_001232, intron 1 of 10) intron (NM_001232, intron 1 of 10) 676 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 265-49 chr10 120302079 120302264 + 2 NA Intergenic L2c|LINE|L2 53052 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 519-43 chr12 9143316 9143804 + 2 NA Intergenic LTR19-int|LTR|ERV1 -27331 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 540-7 chr1 70999930 71000251 + 2 NA intron (NM_198719, intron 2 of 3) intron (NM_198719, intron 2 of 3) -46416 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 421-302 chr8 99757844 99758097 + 2 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 135737 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 216-144 chr18 35419976 35420177 + 2 NA Intergenic L1ME1|LINE|L1 -42739 NM_145756 252884 Hs.351005 NM_145756 ENSG00000186496 ZNF396 ZSCAN14 zinc finger protein 396 protein-coding 294-206 chr2 44736167 44736323 + 2 NA intron (NM_024766, intron 7 of 10) L1MEc|LINE|L1 202643 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 313-518 chr8 46255604 46255863 + 2 NA Intergenic GSAT|Satellite|centr 361910 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 638-99 chr4 12048420 12048948 + 2 NA Intergenic Intergenic -174767 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 373-378 chr7 46278423 46278660 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -357269 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 284-20 chr1 164496361 164496575 + 2 NA Intergenic Intergenic -62892 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 231-27 chr10 10359824 10359978 + 2 NA Intergenic Intergenic 102448 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 323-262 chr2 106343108 106343379 + 2 NA Intergenic Intergenic -26502 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 117-17 chr2 49191414 49191476 + 2 NA Intergenic Intergenic -36918 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 338-246 chr2 22955312 22955481 + 2 NA Intergenic Intergenic 418917 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 553-138 chr2 194638529 194639058 + 2 NA Intergenic L1PA16|LINE|L1 -91802 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 269-298 chr4 166354101 166354266 + 2 NA Intergenic Intergenic 480946 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 375-403 chr8 64775304 64775497 + 2 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 23337 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 533-185 chr5 84452964 84453306 + 2 NA Intergenic L1MA7|LINE|L1 -68255 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 433-126 chr2 14274499 14274774 + 2 NA intron (NR_103814, intron 2 of 3) U6|snRNA|snRNA 126322 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 323-342 chr3 121931515 121931698 + 2 NA intron (NM_021082, intron 18 of 21) intron (NM_021082, intron 18 of 21) 37205 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 673-7 chr1 194139803 194140323 + 2 NA Intergenic L1M3|LINE|L1 835318 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 619-26 chr11 27828695 27829116 + 2 NA Intergenic L1MC4a|LINE|L1 -106875 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 632-54 chr2 83728952 83729406 + 2 NA Intergenic LTR16|LTR|ERVL 206365 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 244-155 chr2 54248043 54248274 + 2 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 8071 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 418-39 chr11 28103628 28103953 + 2 NA intron (NM_031217, intron 1 of 16) Tigger15a|DNA|TcMar-Tigger 4366 NM_031217 81930 Hs.301052 NM_031217 ENSG00000121621 KIF18A MS-KIF18A|PPP1R99 kinesin family member 18A protein-coding 240-14 chr1 101531025 101531251 + 2 NA Intergenic Intergenic 207301 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 295-117 chr13 55667189 55667411 + 2 NA Intergenic Intergenic 492846 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 448-129 chr2 159351838 159352182 + 2 NA intron (NM_001329858, intron 27 of 36) intron (NM_001329858, intron 27 of 36) -65307 NM_001128212 151525 Hs.20848 NM_152528 ENSG00000196151 WDSUB1 UBOX6|WDSAM1 WD repeat, sterile alpha motif and U-box domain containing 1 protein-coding 226-220 chr3 39800444 39800620 + 2 NA Intergenic Intergenic -8382 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 342-57 chr10 24744957 24745247 + 2 NA Intergenic Intergenic -21215 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 410-111 chr18 5805894 5806156 + 2 NA Intergenic L1MB7|LINE|L1 -34670 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 666-24 chr13 78802599 78803085 + 2 NA intron (NR_046869, intron 2 of 4) THE1D|LTR|ERVL-MaLR 37208 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 171-42 chr16 80847235 80847378 + 2 NA intron (NR_131948, intron 1 of 2) L1M3c|LINE|L1 -42708 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 372-434 chr6 68459812 68460049 + 2 NA Intergenic L1MEc|LINE|L1 -130031 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 801-59 chr8 116371567 116372120 + 2 NA Intergenic L1PA15-16|LINE|L1 -46784 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 839-6 chr11 58456595 58457145 + 2 NA Intergenic L1MA8|LINE|L1 -16697 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 284-185 chr19 48524144 48524365 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -11065 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 195 chr1 2259477 2259628 + 2 NA intron (NM_003036, intron 1 of 6) L1MC4|LINE|L1 31233 NM_003036 6497 Hs.656507 NM_003036 ENSG00000157933 SKI SGS|SKV SKI proto-oncogene protein-coding 453-283 chr8 94735235 94735655 + 2 NA intron (NM_181787, intron 3 of 18) intron (NM_181787, intron 3 of 18) 15545 NM_181787 286148 Hs.567828 NM_181787 ENSG00000156162 DPY19L4 - dpy-19 like 4 protein-coding 363-256 chr20 40531178 40531487 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 157904 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 153-27 chr13 52411927 52412019 + 2 NA TTS (NM_001282169) TTS (NM_001282169) -5801 NM_018676 55901 Hs.325667 NM_018676 ENSG00000136114 THSD1 TMTSP|UNQ3010 thrombospondin type 1 domain containing 1 protein-coding 359-156 chr15 60676389 60676671 + 2 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -5039 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 545-52 chr12 10705416 10705856 + 2 NA intron (NM_001145426, intron 5 of 8) L1MC4|LINE|L1 17687 NM_003651 8531 Hs.221889 NM_003651 ENSG00000060138 YBX3 CSDA|CSDA1|DBPA|ZONAB Y-box binding protein 3 protein-coding 394-285 chr6 62565053 62565426 + 2 NA Intergenic Intergenic -279012 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 336-495 chr6 121894144 121894434 + 2 NA Intergenic Intergenic 458643 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 379-334 chr8 52857257 52857613 + 2 NA Intergenic MER33|DNA|hAT-Charlie -82473 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 520-192 chr3 110020501 110020859 + 2 NA Intergenic L1PA11|LINE|L1 417852 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 298-317 chr4 30864946 30865183 + 2 NA intron (NM_032457, intron 1 of 2) L3|LINE|CR1 144695 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 254-250 chr3 114248496 114248710 + 2 NA Intergenic L1MDa|LINE|L1 -11025 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 264-94 chr12 60179199 60179377 + 2 NA Intergenic Intergenic 489918 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 603-113 chr3 153606393 153606860 + 2 NA intron (NR_146713, intron 3 of 6) intron (NR_146713, intron 3 of 6) 122131 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 418-201 chr4 181838751 181839010 + 2 NA Intergenic L1MEd|LINE|L1 -8907 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 188-181 chr6 63970934 63971058 + 2 NA intron (NM_001292009, intron 35 of 43) LTR37B|LTR|ERV1 164160 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 205-104 chr15 80516849 80516979 + 2 NA intron (NM_014862, intron 8 of 18) L1MCa|LINE|L1 46030 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 448-42 chr10 113366837 113367227 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -183799 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 286-120 chr14 60475530 60475803 + 2 NA intron (NM_174978, intron 5 of 17) MER58B|DNA|hAT-Charlie 10397 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 260-144 chr15 54585702 54585899 + 2 NA intron (NM_001329919, intron 29 of 31) MER67C|LTR|ERV1 -470947 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 331-57 chr10 75068531 75068796 + 2 NA Intergenic Intergenic -10080 NM_001003892 338599 Hs.535090 NM_001003892 ENSG00000188716 DUPD1 DUSP27|FMDSP dual specificity phosphatase and pro isomerase domain containing 1 protein-coding 288-33 chr1 221592211 221592391 + 2 NA Intergenic L1MC4a|LINE|L1 144599 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 442-112 chr18 57104534 57104919 + 2 NA Intergenic L1P3|LINE|L1 -32607 NR_048536 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 324-19 chr1 103917091 103917255 + 2 NA Intergenic Intergenic -155850 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 557-66 chr16 73731029 73731465 + 2 NA Intergenic Intergenic 344442 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 337-290 chr2 191485664 191485989 + 2 NA Intergenic L2a|LINE|L2 -192246 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 272-249 chr22 26230827 26231019 + 2 NA intron (NM_001184776, intron 1 of 14) L2a|LINE|L2 61449 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 365-356 chr6 108881668 108881949 + 2 NA intron (NM_001286609, intron 4 of 16) intron (NM_001286609, intron 4 of 16) 33386 NM_032131 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 773-9 chr14 42114514 42115163 + 2 NA Intergenic Intergenic 507982 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 307-247 chr2 106191840 106192116 + 2 NA intron (NM_025076, intron 1 of 14) MER5A|DNA|hAT-Charlie 2361 NM_001253875 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 240-80 chr11 63499365 63499543 + 2 NA Intergenic LTR8A|LTR|ERV1 -6630 NM_001142536 85329 Hs.502774 NM_033101 ENSG00000133317 LGALS12 GAL12|GRIP1 galectin 12 protein-coding 197-126 chr22 27125817 27125989 + 2 NA Intergenic Intergenic -61613 NM_001318392 105372977 Hs.743180 NM_001318392 LOC105372977 - uncharacterized LOC105372977 protein-coding 269-166 chr18 61249174 61249348 + 2 NA Intergenic Intergenic -84169 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 411-177 chr3 44495701 44495987 + 2 NA Intergenic Intergenic 14773 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 120-6 chr1 216035904 216036017 + 2 NA intron (NM_206933, intron 32 of 71) intron (NM_206933, intron 32 of 71) -36505 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 239-241 chr3 61554161 61554383 + 2 NA Intergenic L1MD|LINE|L1 -7299 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 385-238 chr3 36558491 36558826 + 2 NA Intergenic Intergenic 178171 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 206-195 chr5 3021865 3022029 + 2 NA Intergenic Intergenic 104093 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 336-379 chr3 147672135 147672442 + 2 NA Intergenic Intergenic 250961 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 347-41 chr10 12968346 12968589 + 2 NA intron (NM_001282658, intron 6 of 6) L1M1|LINE|L1 33246 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 336-33 chr1 118030902 118031178 + 2 NA intron (NM_206996, intron 25 of 48) L1PA8|LINE|L1 101301 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 414-322 chr8 58845094 58845453 + 2 NA intron (NM_014729, intron 4 of 8) intron (NM_014729, intron 4 of 8) -185420 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 358-52 chr10 77339078 77339370 + 2 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 11537 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 389-172 chr2 76045103 76045442 + 2 NA Intergenic L1M1|LINE|L1 -334357 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 509-77 chr15 60042188 60042531 + 2 NA Intergenic Intergenic 38048 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 990-26 chr9 129512547 129513207 + 2 NA intron (NR_038955, intron 4 of 4) AluSp|SINE|Alu 24217 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 810-40 chr5 19901429 19902030 + 2 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -15457 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 307-491 chr8 128984109 128984273 + 2 NA Intergenic Intergenic -18190 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 264-359 chr6 62246419 62246603 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 39714 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 420-302 chr9 18505034 18505401 + 2 NA intron (NM_052866, intron 2 of 12) intron (NM_052866, intron 2 of 12) 31064 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 324-450 chr6 23126475 23126708 + 2 NA Intergenic Intergenic -408667 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 333-206 chr18 61452612 61452811 + 2 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 119281 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 243-49 chr10 72149659 72149792 + 2 NA intron (NM_001369099, intron 6 of 8) intron (NM_001369099, intron 6 of 8) -60693 NM_001134434 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 419-246 chr6 39944242 39944579 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -9948 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 526-214 chr6 64168337 64168796 + 2 NA intron (NM_001292009, intron 31 of 43) L1MB8|LINE|L1 361730 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 488-249 chr6 156492143 156492488 + 2 NA Intergenic L1ME3Cz|LINE|L1 113565 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 443-11 chr1 96123769 96124078 + 2 NA Intergenic MER77B|LTR|ERVL 131855 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 213-44 chr10 80345427 80345623 + 2 NA intron (NM_001270042, intron 1 of 3) L1MA10|LINE|L1 780 NR_070309 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 408-338 chr8 108699583 108699944 + 2 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 87831 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 199-57 chr14 51674084 51674194 + 2 NA intron (NM_001267046, intron 1 of 13) intron (NM_001267046, intron 1 of 13) 22229 NM_001267046 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 699-30 chr14 81653327 81653882 + 2 NA Intergenic Intergenic -30543 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 502-38 chr10 105220066 105220389 + 2 NA intron (NM_014978, intron 19 of 26) intron (NM_014978, intron 19 of 26) -554011 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 303-242 chr20 74795 74975 + 2 NA Intergenic Intergenic -12787 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 345-234 chr19 28339800 28340060 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -266758 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 306-82 chr11 87443445 87443685 + 2 NA Intergenic Intergenic 275846 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 378-391 chr7 22471934 22472285 + 2 NA intron (NM_001164460, intron 4 of 4) intron (NM_001164460, intron 4 of 4) 28173 NM_001164460 256227 Hs.729825 NM_207342 ENSG00000105889 STEAP1B - STEAP family member 1B protein-coding 388-157 chr2 49384085 49384397 + 2 NA Intergenic Intergenic -229714 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 267-368 chr6 54925392 54925581 + 2 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 78715 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 338-444 chr5 105398156 105398465 + 2 NA Intergenic Intergenic 298836 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 481-6 chr1 99248196 99248601 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -15894 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 354-163 chr16 57707685 57707930 + 2 NA intron (NM_032269, intron 7 of 17) intron (NM_032269, intron 7 of 17) 13001 NM_001289163 84229 Hs.513635 NM_032269 ENSG00000159625 DRC7 C16orf50|CCDC135|CFAP50|FAP50 dynein regulatory complex subunit 7 protein-coding 304-194 chr17 52551277 52551502 + 2 NA Intergenic Intergenic 160867 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 232-216 chr20 42993498 42993635 + 2 NA intron (NM_133170, intron 1 of 31) (TA)n|Simple_repeat|Simple_repeat 24823 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 365-207 chr2 143178403 143178734 + 2 NA intron (NM_018460, intron 2 of 13) intron (NM_018460, intron 2 of 13) 49149 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 393-42 chr10 89180678 89180963 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 26497 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 330-81 chr11 3992588 3992779 + 2 NA intron (NM_001277962, intron 2 of 12) L1M4|LINE|L1 -102002 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 323-435 chr5 151888305 151888617 + 2 NA intron (NM_001292000, intron 1 of 7) MIR3|SINE|MIR 36390 NM_001146040 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 605-32 chr16 13221135 13221590 + 2 NA intron (NM_001145204, intron 4 of 4) intron (NM_001145204, intron 4 of 4) 319764 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 352-521 chr8 52671333 52671550 + 2 NA intron (NM_001083617, intron 7 of 23) intron (NM_001083617, intron 7 of 23) 42994 NM_014781 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 433-283 chr8 103242328 103242638 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -56011 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 385-91 chr14 27036281 27036557 + 2 NA Intergenic MIR|SINE|MIR 127777 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 199-47 chr12 65040851 65041032 + 2 NA Intergenic MIR|SINE|MIR -48650 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 450-43 chr11 279545 279915 + 2 NA intron (NM_138329, intron 2 of 7) CpG-3720 1160 NM_138329 171389 Hs.352611 NM_138329 ENSG00000174885 NLRP6 AVR|CLR11.4|NALP6|NAVR|NAVR/AVR|PAN3|PYPAF5 NLR family pyrin domain containing 6 protein-coding 328-16 chr1 98980104 98980361 + 2 NA intron (NM_001037317, intron 1 of 5) intron (NM_001037317, intron 1 of 5) -24044 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 358-201 chr2 58799325 58799509 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 278664 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 394-157 chr2 30826871 30827129 + 2 NA Intergenic MER57-int|LTR|ERV1 -19554 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 450-209 chr3 144424344 144424640 + 2 NA Intergenic Intergenic 451411 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 381-178 chr2 1200999 1201206 + 2 NA intron (NM_018968, intron 8 of 16) L1MA4A|LINE|L1 -212359 NM_001206745 7173 Hs.467554 NM_000547 ENSG00000115705 TPO MSA|TDH2A|TPX thyroid peroxidase protein-coding 340-557 chr8 135718426 135718745 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 261129 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 376-220 chr20 48045753 48046031 + 2 NA Intergenic Intergenic -55775 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 360-219 chr2 73056700 73056890 + 2 NA intron (NM_001330406, intron 2 of 14) L1ME1|LINE|L1 2377 NM_001330406 94097 Hs.368171 NM_144579 ENSG00000144040 SFXN5 BBG-TCC|SLC56A5 sideroflexin 5 protein-coding 350-182 chr17 65835222 65835440 + 2 NA intron (NM_001353129, intron 21 of 26) L1MA4|LINE|L1 -8788 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 255-266 chr3 96537576 96537817 + 2 NA Intergenic L1MC3|LINE|L1 177732 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 604-62 chr17 21859959 21860395 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 167654 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 222-222 chr21 31089235 31089394 + 2 NA Intergenic SVA_A|Retroposon|SVA -50838 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 321-444 chr5 2140182 2140358 + 2 NA Intergenic Intergenic 171931 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 1071-26 chr8 134385463 134386059 + 2 NA Intergenic Intergenic -212310 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 272-152 chr17 60625919 60626155 + 2 NA intron (NM_003620, intron 2 of 5) intron (NM_003620, intron 2 of 5) 25854 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 492-228 chr6 70307013 70307370 + 2 NA Intergenic Intergenic -4107 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 362-418 chr7 132555690 132555917 + 2 NA intron (NM_181775, intron 2 of 4) LTR82B|LTR|ERVL 20667 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 352-143 chr14 56381921 56382179 + 2 NA Intergenic L1MA3|LINE|L1 -132281 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 396-146 chr19 49617625 49617974 + 2 NA intron (NM_020719, intron 9 of 13) intron (NM_020719, intron 9 of 13) 22344 NM_006270 6237 Hs.515536 NM_006270 ENSG00000126458 RRAS R-Ras RAS related protein-coding 379-366 chr8 135140353 135140558 + 2 NA Intergenic Intergenic -93676 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 326-65 chr10 52660865 52661173 + 2 NA intron (NR_155748, intron 1 of 2) L1MA10|LINE|L1 94385 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 316-423 chr5 13121119 13121335 + 2 NA Intergenic MIR|SINE|MIR -88341 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 290-196 chr2 12851232 12851517 + 2 NA Intergenic L1MA1|LINE|L1 114007 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 487-249 chr6 108974636 108975041 + 2 NA TTS (NM_032131) TTS (NM_032131) 34150 NM_001199934 27244 Hs.591336 NM_014454 ENSG00000080546 SESN1 PA26|SEST1 sestrin 1 protein-coding 270-95 chr13 51524618 51524826 + 2 NA Intergenic Intergenic -27867 NR_039852 100616423 NR_039852 ENSG00000266611 MIR4703 - microRNA 4703 ncRNA 812-57 chr9 76923934 76924663 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -18184 NM_015225 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 474-305 chr9 32892352 32892743 + 2 NA Intergenic AluJr|SINE|Alu 109007 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 234-78 chr12 85600079 85600308 + 2 NA Intergenic Intergenic 236216 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 328-213 chr17 71885218 71885398 + 2 NA Intergenic L1MC|LINE|L1 140671 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 186-9 chr1 158656248 158656411 + 2 NA intron (NM_003126, intron 20 of 51) GA-rich|Low_complexity|Low_complexity 30386 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 702-47 chr2 122868253 122868785 + 2 NA Intergenic Intergenic 204962 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 199-41 chr11 95599025 95599180 + 2 NA Intergenic L1M5|LINE|L1 190680 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 427-89 chr16 61557593 61557994 + 2 NA Intergenic Intergenic 478645 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 313-561 chr9 119610573 119610809 + 2 NA Intergenic Intergenic -241256 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 212-68 chr11 79305011 79305217 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 96995 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 166-79 chr3 142709352 142709485 + 2 NA intron (NM_001145319, intron 14 of 15) intron (NM_001145319, intron 14 of 15) -14616 NM_001251845 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 362-462 chr9 81362578 81362874 + 2 NA Intergenic Intergenic 326809 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 313-231 chr2 13349662 13349921 + 2 NA Intergenic L1PA13|LINE|L1 -342778 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 435-131 chr2 176173388 176173786 + 2 NA TTS (NM_006898) TTS (NM_006898) 4542 NR_110462 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|MIR7704HG|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 379-166 chr2 106873922 106874278 + 2 NA intron (NM_032528, intron 1 of 5) intron (NM_032528, intron 1 of 5) 11928 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 343-302 chr20 39219072 39219384 + 2 NA intron (NR_027124, intron 1 of 3) intron (NR_027124, intron 1 of 3) 5520 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 212-263 chr5 101064630 101064832 + 2 NA Intergenic Intergenic -161449 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 282-217 chr2 102696034 102696280 + 2 NA intron (NM_003048, intron 7 of 11) MER63A|DNA|hAT-Blackjack 40731 NR_136173 84804 Hs.590898 NM_032718 ENSG00000135953 MFSD9 - major facilitator superfamily domain containing 9 protein-coding 390-263 chr4 46905140 46905421 + 2 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 3965 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 350-424 chr5 164090699 164090931 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 376587 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 301-458 chr8 110006489 110006662 + 2 NA Intergenic L1M1|LINE|L1 -30804 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 534-85 chr16 63816681 63817098 + 2 NA Intergenic Intergenic 1305174 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 560-10 chr1 213620046 213620471 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -304491 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 603-115 chr3 189059744 189060301 + 2 NA Intergenic AluSp|SINE|Alu -111949 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 241-232 chr3 14221010 14221246 + 2 NA Intergenic L1MB5|LINE|L1 42311 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 503-265 chr7 54747634 54747963 + 2 NA Intergenic AluSx3|SINE|Alu 11413 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 551-143 chr4 146038706 146039203 + 2 NA Intergenic Intergenic 82959 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 387-310 chr6 67596213 67596470 + 2 NA Intergenic Intergenic -459010 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 485-44 chr11 57447022 57447421 + 2 NA Intergenic Intergenic -13307 NM_178570 349667 Hs.502618 NM_178570 ENSG00000186907 RTN4RL2 NGRH1|NgR2 reticulon 4 receptor like 2 protein-coding 267-384 chr6 166012493 166012683 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -24549 NR_026861 90632 Hs.31917 NR_026860 ENSG00000112541 LINC00473 C6orf176|LNC473|bA142J11.1 long intergenic non-protein coding RNA 473 ncRNA 297-78 chr11 58474657 58474855 + 2 NA Intergenic L1MB8|LINE|L1 33349 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 369-97 chr13 89813853 89814143 + 2 NA Intergenic Intergenic -249585 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 121-78 chrX 83022227 83022310 + 2 NA Intergenic L1MA2|LINE|L1 -486022 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 324-234 chr19 8881294 8881466 + 2 NA intron (NM_024690, intron 67 of 83) intron (NM_024690, intron 67 of 83) 38787 NM_145208 85509 Hs.133912 NM_145208 ENSG00000170948 MBD3L1 MBD3L methyl-CpG binding domain protein 3 like 1 protein-coding 408-342 chr8 119835631 119835952 + 2 NA intron (NM_024094, intron 8 of 8) MIRc|SINE|MIR -2950 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 293-174 chr19 56122200 56122371 + 2 NA promoter-TSS (NM_001351682) promoter-TSS (NM_001351682) -990 NM_001002836 126208 Hs.397153 NM_001002836 ENSG00000142409 ZNF787 TIP20 zinc finger protein 787 protein-coding 390-142 chr17 60594825 60595124 + 2 NA Intergenic Intergenic -5209 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 284-163 chr17 57633869 57634031 + 2 NA TTS (NM_170721) TTS (NM_170721) -25538 NR_110807 101927539 Hs.680439 NR_110807 ENSG00000263499 LOC101927539 - uncharacterized LOC101927539 ncRNA 527-110 chr17 60760818 60761136 + 2 NA intron (NM_001330413, intron 6 of 25) L1MA4A|LINE|L1 83126 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 420-97 chr16 76172868 76173144 + 2 NA Intergenic L1PB3|LINE|L1 -104395 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 399-139 chr2 40986802 40987134 + 2 NA Intergenic L2a|LINE|L2 -474533 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 209-57 chr11 58461579 58461727 + 2 NA Intergenic L1M5|LINE|L1 -21480 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 508-129 chr20 13507747 13508103 + 2 NA intron (NR_136631, intron 10 of 13) L1MA9|LINE|L1 131007 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 309-569 chr8 136520065 136520348 + 2 NA Intergenic Intergenic -10592 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 360-475 chr8 125710267 125710534 + 2 NA Intergenic L1ME3A|LINE|L1 240797 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 118-42 chr5 110997495 110997582 + 2 NA Intergenic Intergenic -72542 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 337-121 chr12 104148216 104148418 + 2 NA Intergenic L1ME4a|LINE|L1 -10107 NM_006166 4801 Hs.84928 NM_006166 ENSG00000120837 NFYB CBF-A|CBF-B|HAP3|NF-YB nuclear transcription factor Y subunit beta protein-coding 607-64 chr19 31480056 31480526 + 2 NA Intergenic L1PA16|LINE|L1 -107898 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 285-395 chr8 10179416 10179588 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 83851 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 611-40 chr14 78866479 78866912 + 2 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -333287 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 418-13 chr1 170459888 170460253 + 2 NA Intergenic Intergenic -72052 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 376-73 chr11 79005772 79006025 + 2 NA intron (NM_001098816, intron 6 of 33) L1PA13|LINE|L1 396211 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 319-503 chr7 53560896 53561111 + 2 NA Intergenic L1ME4b|LINE|L1 250928 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 254-114 chr14 57892787 57892991 + 2 NA Intergenic Intergenic -26797 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 231-46 chr10 125243828 125244021 + 2 NA Intergenic L1ME3B|LINE|L1 -82894 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 243-8 chr1 66288040 66288234 + 2 NA intron (NM_001037340, intron 5 of 14) MSTA|LTR|ERVL-MaLR -43971 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 305-148 chr14 45693924 45694164 + 2 NA Intergenic Intergenic 21558 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 362-53 chr10 37330037 37330251 + 2 NA intron (NR_104061, intron 3 of 4) L1PB2|LINE|L1 20958 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 480-255 chr6 94916639 94916999 + 2 NA Intergenic Intergenic 660632 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 341-123 chr12 67105561 67105813 + 2 NA Intergenic L1MA8|LINE|L1 -9403 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 370-84 chr11 48291213 48291495 + 2 NA Intergenic MER4-int|LTR|ERV1 -14869 NM_001004725 256148 Hs.553657 NM_001004725 ENSG00000176555 OR4S1 OR11-100 olfactory receptor family 4 subfamily S member 1 protein-coding 440-8 chr1 115032532 115032909 + 2 NA intron (NM_000549, intron 1 of 2) intron (NM_000549, intron 1 of 2) -1226 NM_001277991 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 554-177 chr5 94608517 94608856 + 2 NA intron (NM_001145678, intron 1 of 20) Charlie1|DNA|hAT-Charlie 9918 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 165-48 chr2 15247595 15247695 + 2 NA intron (NR_052013, intron 44 of 50) L1PA7|LINE|L1 313689 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 162-72 chr20 47965620 47965722 + 2 NA Intergenic Intergenic -17555 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 425-203 chr4 56300861 56301238 + 2 NA intron (NM_020722, intron 4 of 10) intron (NM_020722, intron 4 of 10) 86442 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 487-200 chr3 194868032 194868369 + 2 NA Intergenic Intergenic -99491 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 323-439 chr5 164909152 164909378 + 2 NA Intergenic Intergenic 438986 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 367-482 chr9 132695955 132696262 + 2 NA Intergenic Intergenic 25644 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 201-263 chrX 42676618 42676740 + 2 NA Intergenic Intergenic 101484 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 402-312 chr7 21378638 21378885 + 2 NA Intergenic L1MEc|LINE|L1 -49322 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 314-243 chr18 55679306 55679588 + 2 NA Intergenic Intergenic -43490 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 297-403 chr6 66984437 66984654 + 2 NA Intergenic L1MA7|LINE|L1 -1070806 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 533-167 chr4 155674892 155675231 + 2 NA intron (NM_000856, intron 3 of 10) Tigger3b|DNA|TcMar-Tigger 7399 NM_001130684 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 158-124 chr9 26512514 26512641 + 2 NA Intergenic Intergenic 380225 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 260-332 chr5 3425305 3425504 + 2 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) -27412 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 313-350 chr3 95717377 95717588 + 2 NA Intergenic Intergenic -34289 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 335-463 chr6 54744474 54744683 + 2 NA Intergenic L1M2|LINE|L1 -102193 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 396-300 chr5 159598963 159599194 + 2 NA Intergenic L2a|LINE|L2 -132802 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 458-244 chr7 119541783 119542139 + 2 NA Intergenic L1ME3G|LINE|L1 365414 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 515-240 chr6 118450073 118450402 + 2 NA Intergenic L1MEg|LINE|L1 -51136 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 337-365 chr3 119590818 119591136 + 2 NA Intergenic MER21C|LTR|ERVL -6871 NM_001206961 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 337-368 chr3 132192454 132192718 + 2 NA Intergenic Ricksha_0|DNA|MULE-MuDR -124821 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 328-87 chr11 62491318 62491530 + 2 NA intron (NM_024060, intron 5 of 5) intron (NM_024060, intron 5 of 5) 54240 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 204-23 chr10 32402656 32402767 + 2 NA Intergenic Intergenic -23942 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 384-255 chr4 42165673 42165969 + 2 NA Intergenic AluJo|SINE|Alu -13166 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 321-201 chr15 91406350 91406527 + 2 NA Intergenic Intergenic -56901 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 237-312 chr5 157050994 157051115 + 2 NA intron (NM_001173393, intron 4 of 8) intron (NM_001173393, intron 4 of 8) 7187 NM_012206 26762 Hs.129711 NM_012206 ENSG00000113249 HAVCR1 CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 365-399 chr8 87101522 87101817 + 2 NA intron (NM_173538, intron 4 of 10) L1MEb|LINE|L1 235254 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 511-9 chr1 153323517 153323867 + 2 NA Intergenic L1ME4b|LINE|L1 -12974 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 291-226 chr2 106710551 106710832 + 2 NA Intergenic Intergenic 175337 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 404-301 chr7 144560567 144560797 + 2 NA intron (NM_001042482, intron 6 of 7) MLT1F|LTR|ERVL-MaLR -150455 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 387-46 chr10 117206907 117207126 + 2 NA intron (NM_181840, intron 2 of 2) L2c|LINE|L2 9527 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 192-79 chr16 68557501 68557641 + 2 NA intron (NR_130976, intron 2 of 4) L1ME3G|LINE|L1 18280 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 292-474 chrX 42663475 42663704 + 2 NA Intergenic Intergenic 114574 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 408-120 chr15 81754958 81755282 + 2 NA Intergenic Intergenic 290898 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 576-126 chr5 11276915 11277486 + 2 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 311717 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 435-267 chr9 98804413 98804711 + 2 NA Intergenic L1ME4b|LINE|L1 -3108 NM_024642 79695 Hs.47099 NM_024642 ENSG00000119514 GALNT12 CRCS1|GalNAc-T12 polypeptide N-acetylgalactosaminyltransferase 12 protein-coding 368-422 chr7 54394895 54395226 + 2 NA Intergenic L1MCa|LINE|L1 64363 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 283-320 chr4 55097359 55097563 + 2 NA intron (NM_002253, intron 18 of 29) MER91A|DNA|hAT-Tip100 28134 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 489-121 chr2 6413031 6413395 + 2 NA Intergenic (AACA)n|Simple_repeat|Simple_repeat -37791 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 502-194 chr4 30873485 30873924 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 153335 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 467-16 chr1 223388386 223388799 + 2 NA Intergenic MER33|DNA|hAT-Charlie -4823 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 289-100 chr12 39995949 39996185 + 2 NA intron (NM_052885, intron 3 of 9) THE1B-int|LTR|ERVL-MaLR 110014 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 597-101 chr4 123732728 123733221 + 2 NA intron (NR_027105, intron 3 of 5) L1PA17|LINE|L1 -41290 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 339-437 chr5 2924732 2925057 + 2 NA Intergenic L1M5|LINE|L1 7040 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 281-179 chr18 62032534 62032774 + 2 NA Intergenic Intergenic -139647 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 594-165 chr9 103168622 103169074 + 2 NA intron (NR_121578, intron 8 of 9) L1M1|LINE|L1 156185 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 271-176 chr18 9960354 9960547 + 2 NA TTS (NM_003574) TTS (NM_003574) 46434 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 246-297 chr4 68280965 68281205 + 2 NA Intergenic Intergenic -35391 NM_182502 132724 Hs.407122 NM_182502 ENSG00000185873 TMPRSS11B - transmembrane serine protease 11B protein-coding 302-282 chr3 32007069 32007235 + 2 NA Intergenic Intergenic -25302 NM_017784 114884 Hs.150122 NM_017784 ENSG00000144645 OSBPL10 ORP10|OSBP9 oxysterol binding protein like 10 protein-coding 198-241 chr8 67553747 67553904 + 2 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 192535 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 301-468 chr8 139355410 139355571 + 2 NA Intergenic Intergenic 347633 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 329-554 chr8 5944902 5945214 + 2 NA Intergenic Intergenic 461490 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 305-266 chr2 112990186 112990345 + 2 NA Intergenic L1MA8|LINE|L1 12259 NM_019618 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 428-73 chr14 87110256 87110670 + 2 NA Intergenic Intergenic 204685 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 241-246 chr3 135768834 135769032 + 2 NA Intergenic L1MEc|LINE|L1 -196795 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 457-246 chr7 126474634 126474895 + 2 NA intron (NM_001371085, intron 9 of 10) L1MA9|LINE|L1 583420 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 284-72 chr11 69584359 69584626 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -56613 NM_053056 595 Hs.523852 NM_053056 ENSG00000110092 CCND1 BCL1|D11S287E|PRAD1|U21B31 cyclin D1 protein-coding 226-100 chr15 56127157 56127336 + 2 NA intron (NM_001370561, intron 7 of 11) L1M4|LINE|L1 62686 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 396-77 chr11 114343478 114343778 + 2 NA Intergenic Intergenic 36411 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 359-3 chr1 14368641 14368931 + 2 NA intron (NR_149058, intron 3 of 4) intron (NR_149058, intron 3 of 4) 51187 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 431-125 chr2 33643836 33644191 + 2 NA Intergenic AluSp|SINE|Alu -44651 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 263-266 chr3 127931392 127931558 + 2 NA intron (NM_001370224, intron 4 of 6) intron (NM_001370224, intron 4 of 6) 16243 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 350-375 chr4 182029582 182029805 + 2 NA Intergenic Intergenic 114822 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 577-59 chr14 63251547 63251951 + 2 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 47306 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 311-294 chr20 14232534 14232768 + 2 NA intron (NM_001351663, intron 3 of 17) Tigger1|DNA|TcMar-Tigger 104961 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 753-39 chr20 59765368 59766029 + 2 NA intron (NM_183246, intron 4 of 11) intron (NM_183246, intron 4 of 11) 44488 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 569-171 chr7 91844453 91844903 + 2 NA Intergenic L2c|LINE|L2 36024 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 251-304 chr5 62849530 62849765 + 2 NA Intergenic L1M2|LINE|L1 270828 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 124-66 chr6 38773513 38773619 + 2 NA intron (NM_001371, intron 11 of 91) intron (NM_001371, intron 11 of 91) 58255 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 318-131 chr12 19562396 19562570 + 2 NA Intergenic L1M4c|LINE|L1 121884 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 430-333 chr9 76004881 76005179 + 2 NA intron (NR_120409, intron 3 of 19) L1MC4|LINE|L1 114357 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 341-312 chr22 22361243 22361576 + 2 NA Intergenic L1PB1|LINE|L1 63311 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 250-300 chr4 26612348 26612537 + 2 NA intron (NM_001292054, intron 1 of 17) L2a|LINE|L2 28358 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 199-236 chr8 69260975 69261114 + 2 NA Intergenic L1ME4c|LINE|L1 -156854 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 427-252 chr8 43633034 43633257 + 2 NA Intergenic ALR/Alpha|Satellite|centr 340703 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 314-503 chr6 51037831 51038059 + 2 NA Intergenic L2a|LINE|L2 219074 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 316-208 chr17 31677638 31677933 + 2 NA Intergenic Intergenic 102374 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 402-154 chr2 106310496 106310784 + 2 NA Intergenic Intergenic -59105 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 181-155 chr8 35077019 35077148 + 2 NA Intergenic L1ME1|LINE|L1 -158392 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 694-34 chr13 88896096 88896590 + 2 NA Intergenic MER52A|LTR|ERV1 269490 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 520-155 chr2 137095691 137096038 + 2 NA intron (NM_001316349, intron 4 of 27) AluJo|SINE|Alu 330319 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 256-67 chr11 48652283 48652514 + 2 NA Intergenic ALR/Alpha|Satellite|centr 163605 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 244-174 chr2 122882282 122882476 + 2 NA Intergenic Intergenic 191102 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 355-437 chr6 106301190 106301477 + 2 NA intron (NR_104403, intron 1 of 4) intron (NR_104403, intron 1 of 4) 14933 NR_104402 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 349-332 chr3 88697835 88698096 + 2 NA Intergenic L1MEc|LINE|L1 359509 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 300-254 chr21 27349748 27350035 + 2 NA Intergenic Intergenic -372488 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 222-74 chr11 95391166 95391352 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -158784 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 304-132 chr13 113133724 113133995 + 2 NA intron (NM_000504, intron 2 of 7) L1ME1|LINE|L1 -3813 NR_126424 104413892 NR_126424 F10-AS1 - F10 antisense RNA 1 ncRNA 263-83 chr12 45568727 45568969 + 2 NA Intergenic LTR88a|LTR|Gypsy? 159073 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 369-39 chr10 56786127 56786487 + 2 NA Intergenic Intergenic -425034 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 558-81 chr18 55838672 55839069 + 2 NA Intergenic L2b|LINE|L2 -57145 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 262-199 chr2 43666573 43666772 + 2 NA intron (NM_172069, intron 2 of 29) L1ME1|LINE|L1 9757 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 388-297 chr6 35124110 35124468 + 2 NA intron (NM_001366329, intron 2 of 7) ERVL-E-int|LTR|ERVL 17050 NM_001366323 6954 Hs.435371 NM_018679 ENSG00000124678 TCP11 D6S230E|FPPR t-complex 11 protein-coding 226-30 chr1 247650049 247650199 + 2 NA Intergenic MER4D|LTR|ERV1 22917 NM_001005487 441933 Hs.553834 NM_001005487 ENSG00000197437 OR13G1 OR1-37 olfactory receptor family 13 subfamily G member 1 protein-coding 351-295 chr3 44501525 44501865 + 2 NA intron (NM_001287349, intron 3 of 4) MLT1M|LTR|ERVL-MaLR 8922 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 217-363 chr8 84311813 84311979 + 2 NA intron (NM_001354320, intron 2 of 9) L1M7|LINE|L1 -103588 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 733-85 chr9 32775993 32776489 + 2 NA Intergenic MLT2D|LTR|ERVL -7299 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 230-2 chr1 29660970 29661138 + 2 NA Intergenic L1MB3|LINE|L1 -310940 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 542-36 chr11 100316231 100316718 + 2 NA intron (NM_001243270, intron 20 of 23) intron (NM_001243270, intron 20 of 23) -370814 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 357-173 chr18 60905067 60905380 + 2 NA Intergenic Intergenic -428207 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 523-172 chr3 19849470 19849776 + 2 NA Intergenic L1MC3|LINE|L1 84594 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 272-400 chr6 137298774 137299040 + 2 NA Intergenic MER39|LTR|ERV1 -79477 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 609-142 chr8 130501832 130502255 + 2 NA Intergenic MLT2B3|LTR|ERVL -58369 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 259-338 chr6 46126899 46127104 + 2 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) 2818 NM_001370649 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 347-455 chr7 15248206 15248419 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -273454 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 223-78 chr13 94849198 94849377 + 2 NA intron (NR_110754, intron 2 of 4) intron (NR_110754, intron 2 of 4) 88346 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 255-341 chr5 135457306 135457447 + 2 NA Intergenic MIRb|SINE|MIR -5025 NM_001099221 497189 Hs.552091 NM_001099221 ENSG00000255833 TIFAB - TIFA inhibitor protein-coding 629-107 chr5 175723333 175723725 + 2 NA Intergenic Intergenic 65458 NM_001131055 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 201-152 chr3 34343317 34343482 + 2 NA Intergenic Intergenic 544769 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 374-188 chr2 88406872 88407193 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 45661 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 231-174 chr2 115345944 115346089 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 2201 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 324-193 chr15 101294446 101294751 + 2 NA intron (NR_135508, intron 1 of 7) intron (NR_135508, intron 1 of 7) 650 NR_135508 6627 Hs.528763 NM_003090 ENSG00000131876 SNRPA1 Lea1|U2A' small nuclear ribonucleoprotein polypeptide A' protein-coding 263-425 chr8 109996015 109996198 + 2 NA Intergenic L1M4b|LINE|L1 -20335 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 449-116 chr2 33657184 33657515 + 2 NA Intergenic MER57-int|LTR|ERV1 -49537 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 202-201 chr5 25961037 25961176 + 2 NA Intergenic L1MEd|LINE|L1 770153 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 283-265 chr20 43158737 43158982 + 2 NA intron (NM_133170, intron 1 of 31) MIRb|SINE|MIR 31047 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 340-147 chr14 56141303 56141607 + 2 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 23044 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 649-32 chr16 31909686 31910245 + 2 NA intron (NR_049749, intron 4 of 4) L1M1|LINE|L1 36158 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 550-36 chr10 88737142 88737559 + 2 NA intron (NM_001080518, intron 5 of 8) MIRb|SINE|MIR 12806 NM_001080518 643414 Hs.632092 NM_001080518 ENSG00000204021 LIPK LIPL2|bA186O14.2 lipase family member K protein-coding 188-174 chr5 162947281 162947440 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -490211 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 347-368 chr5 4069493 4069792 + 2 NA Intergenic Intergenic 473810 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 485-295 chr8 121782726 121783065 + 2 NA Intergenic L2a|LINE|L2 -141455 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 340-100 chr12 17152239 17152431 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 163588 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 338-334 chr3 54605790 54605994 + 2 NA intron (NM_018398, intron 9 of 37) intron (NM_018398, intron 9 of 37) 33965 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 580-138 chr4 81297807 81298252 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -82807 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 316-83 chr10 114344330 114344491 + 2 NA intron (NM_001001936, intron 1 of 18) intron (NM_001001936, intron 1 of 18) 60092 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 269-438 chrX 69025540 69025698 + 2 NA Intergenic L2a|LINE|L2 139834 NM_001032396 64219 Hs.522679 NM_022368 ENSG00000181191 PJA1 PRAJA1|RNF70 praja ring finger ubiquitin ligase 1 protein-coding 342-411 chr5 93976598 93976908 + 2 NA intron (NR_028080, intron 3 of 8) THE1D|LTR|ERVL-MaLR 134910 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 248-131 chr15 80005039 80005206 + 2 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -33926 NM_001114735 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 793-55 chr9 68558692 68559335 + 2 NA Intergenic Intergenic -12411 NR_109769 101927015 Hs.406454 NR_109769 ENSG00000234506 LINC01506 - long intergenic non-protein coding RNA 1506 ncRNA 132-61 chr5 31075868 31075984 + 2 NA Intergenic MER33|DNA|hAT-Charlie -117760 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 357-246 chr21 20184477 20184713 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 74090 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 345-229 chr18 75387848 75388115 + 2 NA Intergenic Intergenic 39722 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 362-46 chr10 16963905 16964151 + 2 NA intron (NM_001081, intron 31 of 66) L1ME3Cz|LINE|L1 -146574 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 315-180 chr16 83547168 83547373 + 2 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 38924 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 227-400 chr9 102092545 102092753 + 2 NA Intergenic L1MCa|LINE|L1 -354069 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 359-76 chr10 129823597 129823869 + 2 NA Intergenic Intergenic 19641 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 361-423 chr7 113360402 113360594 + 2 NA Intergenic Intergenic -241916 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 148-32 chr15 80373505 80373585 + 2 NA Intergenic Intergenic -30837 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 357-94 chr13 38507674 38507916 + 2 NA Intergenic Intergenic -59929 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 351-277 chr21 35162134 35162436 + 2 NA Intergenic Intergenic -112987 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 429-37 chr10 59441176 59441520 + 2 NA Intergenic L1M4c|LINE|L1 -78167 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 261-209 chr2 238716265 238716486 + 2 NA Intergenic L1MB1|LINE|L1 131532 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 206-263 chr8 77011124 77011285 + 2 NA Intergenic Intergenic -10160 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 322-527 chr8 83931765 83932042 + 2 NA Intergenic Intergenic -250884 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 336-596 chrX 64930047 64930232 + 2 NA intron (NM_001178032, intron 1 of 4) L1PBa|LINE|L1 46311 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 288-397 chr7 29552224 29552489 + 2 NA Intergenic Intergenic -11479 NM_175887 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 169-54 chr19 58190431 58190537 + 2 NA intron (NM_133502, intron 4 of 7) intron (NM_133502, intron 4 of 7) 7423 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 322-106 chr11 130318109 130318414 + 2 NA intron (NR_148980, intron 1 of 6) intron (NR_148980, intron 1 of 6) 3268 NR_148980 646383 Hs.155288 NM_001039787 ENSG00000175773 ZBTB44-DT - ZBTB44 divergent transcript ncRNA 210-294 chr8 117101367 117101519 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -33552 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 333-619 chrX 58428666 58428975 + 2 NA Intergenic ALR/Alpha|Satellite|centr -518187 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 224-121 chr18 2701545 2701706 + 2 NA intron (NM_015295, intron 12 of 47) intron (NM_015295, intron 12 of 47) 45738 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 224-49 chr11 81696381 81696535 + 2 NA Intergenic L1M2|LINE|L1 194378 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 261-249 chr3 107911743 107911950 + 2 NA intron (NR_015394, intron 1 of 2) intron (NR_015394, intron 1 of 2) 28641 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 222-64 chr11 58111203 58111385 + 2 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) 8150 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 299-375 chr5 90072710 90072932 + 2 NA Intergenic Intergenic -56101 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 214-27 chr1 216152630 216152787 + 2 NA intron (NM_206933, intron 21 of 71) intron (NM_206933, intron 21 of 71) 80243 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 379-134 chr18 61757305 61757513 + 2 NA Intergenic Intergenic 9233 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 351-243 chr2 160553829 160554140 + 2 NA Intergenic AluSx1|SINE|Alu -60177 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 334-148 chr14 62990304 62990522 + 2 NA intron (NM_139318, intron 4 of 10) intron (NM_139318, intron 4 of 10) 55045 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 477-170 chr2 180473767 180474116 + 2 NA Intergenic L2b|LINE|L2 -218163 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 359-375 chr4 143658742 143659071 + 2 NA intron (NM_001168235, intron 2 of 7) intron (NM_001168235, intron 2 of 7) 41769 NM_001168235 166752 Hs.252714 NM_001168235 ENSG00000183090 FREM3 - FRAS1 related extracellular matrix 3 protein-coding 197-117 chr20 52992028 52992190 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 19751 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 406-92 chr14 100625730 100626041 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -31383 NR_024096 283601 Hs.379802 NM_001007560 ENSG00000196273 LINC00523 C14orf70 long intergenic non-protein coding RNA 523 ncRNA 227-407 chrX 34907025 34907199 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -35684 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 319-182 chr16 78818560 78818782 + 2 NA intron (NM_001291997, intron 7 of 7) AluJr4|SINE|Alu 719017 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 319-489 chr7 4529889 4530191 + 2 NA Intergenic L1MB4|LINE|L1 -152255 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 279-170 chr2 41892026 41892282 + 2 NA intron (NR_033996, intron 2 of 2) L3|LINE|CR1 14599 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 266-79 chr12 13564444 13564664 + 2 NA exon (NM_000834, exon 13 of 13) exon (NM_000834, exon 13 of 13) -187809 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 349-440 chr6 40127447 40127656 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -193089 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 214-342 chr8 134540230 134540414 + 2 NA intron (NM_020863, intron 11 of 15) intron (NM_020863, intron 11 of 15) -57749 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 326-439 chr5 179193623 179193835 + 2 NA intron (NM_014244, intron 4 of 21) L2b|LINE|L2 133356 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 349-281 chr2 193719787 193720132 + 2 NA Intergenic Intergenic -624310 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 561-9 chr1 114492330 114492790 + 2 NA intron (NM_015906, intron 1 of 19) L1MB4|LINE|L1 18643 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 279-99 chr14 27286877 27287038 + 2 NA Intergenic MER57A-int|LTR|ERV1 -325631 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 335-319 chr21 40912230 40912432 + 2 NA Intergenic Intergenic -65173 NR_073202 1826 Hs.160418 NM_001389 ENSG00000171587 DSCAM CHD2|CHD2-42|CHD2-52 DS cell adhesion molecule protein-coding 346-154 chr15 47703856 47704181 + 2 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -13487 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 336-369 chr3 77980971 77981232 + 2 NA Intergenic Intergenic 67862 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 314-400 chr3 182599010 182599275 + 2 NA Intergenic Intergenic -92018 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 310-471 chr7 14189553 14189856 + 2 NA intron (NM_001350717, intron 22 of 24) L1MA6|LINE|L1 -198279 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 392-298 chr7 19210384 19210717 + 2 NA Intergenic Intergenic -65129 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 213-262 chr7 30217734 30217869 + 2 NA Intergenic L1MC1|LINE|L1 -66796 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 325-414 chr4 149861675 149861850 + 2 NA Intergenic L1MA4|LINE|L1 -45919 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 304-126 chr12 128511916 128512071 + 2 NA intron (NM_001136103, intron 2 of 8) intron (NM_001136103, intron 2 of 8) 217901 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 251-23 chr1 237503984 237504193 + 2 NA intron (NM_001035, intron 22 of 104) MER112|DNA|hAT-Charlie 32969 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 363-279 chr3 6290912 6291130 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 514428 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 476-83 chr14 58726319 58726670 + 2 NA Intergenic AluJb|SINE|Alu 87657 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 210-108 chr19 32905515 32905694 + 2 NA intron (NM_032816, intron 14 of 18) L1MEd|LINE|L1 -35837 NM_001126335 11136 Hs.743345 NM_014270 ENSG00000021488 SLC7A9 BAT1|CSNU3 solute carrier family 7 member 9 protein-coding 309-43 chr10 34931079 34931246 + 2 NA Intergenic AluSx1|SINE|Alu 115394 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 471-126 chr2 6095204 6095603 + 2 NA Intergenic Intergenic 113425 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 374-286 chr4 168050394 168050714 + 2 NA Intergenic L1MB7|LINE|L1 -41983 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 358-363 chr5 30368489 30368816 + 2 NA Intergenic L1MEg|LINE|L1 488092 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 122-22 chr19 39134536 39134635 + 2 NA intron (NM_001014834, intron 1 of 7) L1ME3B|LINE|L1 8799 NM_001014832 10298 Hs.20447 NM_005884 ENSG00000130669 PAK4 - p21 (RAC1) activated kinase 4 protein-coding 242-313 chr5 99273785 99273966 + 2 NA Intergenic Intergenic -260115 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 302-253 chr20 60012725 60012945 + 2 NA non-coding (NR_145482, exon 18 of 18) non-coding (NR_145482, exon 18 of 18) 16461 NM_001348204 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 250-65 chr11 55629135 55629311 + 2 NA Intergenic L1PA13|LINE|L1 -9135 NM_001004124 81300 NM_001004124 ENSG00000181927 OR4P4 OR4P3P olfactory receptor family 4 subfamily P member 4 protein-coding 365-75 chr11 80493658 80493903 + 2 NA Intergenic L1MA6|LINE|L1 269023 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 239-429 chr8 139333058 139333218 + 2 NA Intergenic MIRc|SINE|MIR 369985 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 340-446 chr5 58789178 58789448 + 2 NA intron (NM_138453, intron 3 of 4) intron (NM_138453, intron 3 of 4) 206238 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 327-10 chr1 88863019 88863323 + 2 NA intron (NM_001514, intron 3 of 6) MIRb|SINE|MIR 28396 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 282-254 chr2 228024436 228024606 + 2 NA intron (NM_030623, intron 5 of 10) intron (NM_030623, intron 5 of 10) 152890 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 336-332 chr20 60311869 60312069 + 2 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) 3495 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 271-119 chr13 106928089 106928304 + 2 NA Intergenic Intergenic 274316 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 211-9 chr1 113520356 113520542 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 129934 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 472-256 chr5 111656255 111656610 + 2 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) 99819 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 222-171 chr2 48029549 48029706 + 2 NA Intergenic MER97c|DNA|hAT-Tip100 -123834 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 351-380 chr5 45893836 45894164 + 2 NA Intergenic LTR16|LTR|ERVL -197620 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 221-274 chr7 26544409 26544572 + 2 NA Intergenic Intergenic -5665 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 315-307 chr3 34125032 34125226 + 2 NA Intergenic L1M1|LINE|L1 326499 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 303-199 chr2 29671009 29671228 + 2 NA intron (NM_004304, intron 3 of 28) L1MA4|LINE|L1 -195741 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 343-396 chr4 88413238 88413551 + 2 NA intron (NM_001165136, intron 12 of 21) intron (NM_001165136, intron 12 of 21) 34655 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 431-154 chr2 193547162 193547481 + 2 NA Intergenic L1PB1|LINE|L1 -796948 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 249-147 chr16 83597658 83597892 + 2 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 89429 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 238-361 chr7 53990351 53990498 + 2 NA Intergenic Intergenic -178493 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 372-341 chr3 160238563 160238770 + 2 NA intron (NR_148401, intron 18 of 18) MIR|SINE|MIR 13030 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 263-119 chr15 70866671 70866905 + 2 NA intron (NM_001284357, intron 1 of 16) intron (NM_001284357, intron 1 of 16) -12631 NM_018357 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 333-98 chr11 110640058 110640275 + 2 NA intron (NM_020809, intron 3 of 15) intron (NM_020809, intron 3 of 15) 71659 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 317-351 chr4 60771007 60771292 + 2 NA Intergenic L1MA3|LINE|L1 -151470 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 153-18 chr11 56024825 56024918 + 2 NA Intergenic Intergenic -5548 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 380-318 chr5 143122830 143123172 + 2 NA intron (NR_146198, intron 18 of 22) L2a|LINE|L2 -69499 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 340-101 chr12 20202166 20202389 + 2 NA Intergenic L1PB3|LINE|L1 -74376 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 404-94 chr14 43647235 43647564 + 2 NA Intergenic LTR27|LTR|ERV1 859884 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 312-111 chr12 93258719 93258992 + 2 NA intron (NR_040096, intron 2 of 4) MLT1C|LTR|ERVL-MaLR 84489 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 186-170 chr9 29085316 29085483 + 2 NA intron (NM_001354574, intron 1 of 5) MIRb|SINE|MIR 126900 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 457-254 chr8 79344207 79344547 + 2 NA Intergenic Intergenic 12189 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 490-171 chr21 30451793 30452172 + 2 NA Intergenic Intergenic 11703 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 167-92 chr5 45168548 45168650 + 2 NA Intergenic Intergenic 359652 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 604-149 chr7 11186616 11187207 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 213039 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 301-290 chr3 147471035 147471297 + 2 NA intron (NR_121655, intron 1 of 2) (TC)n|Simple_repeat|Simple_repeat 49839 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 275-144 chr17 58068009 58068191 + 2 NA Intergenic Intergenic 15104 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 309-312 chr20 59611999 59612154 + 2 NA intron (NM_080672, intron 1 of 12) intron (NM_080672, intron 1 of 12) 7536 NM_080672 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 408-180 chr2 229423656 229424057 + 2 NA intron (NM_139072, intron 8 of 12) L2a|LINE|L2 -152569 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 365-387 chr7 141110147 141110429 + 2 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 36224 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 370-33 chr10 10944072 10944261 + 2 NA intron (NM_001326319, intron 4 of 16) L2a|LINE|L2 7997 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 297-375 chr5 86743341 86743516 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -3390 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 396-66 chr11 4565491 4565864 + 2 NA Intergenic Intergenic 20486 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 376-27 chr1 218250571 218250766 + 2 NA Intergenic Intergenic -34625 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 284-244 chr21 28386253 28386410 + 2 NA Intergenic Intergenic -152987 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 646-122 chr7 100496811 100497342 + 2 NA Intergenic MER113A|DNA|hAT-Charlie 13149 NM_173564 222950 Hs.320086 NM_173564 ENSG00000166924 NYAP1 C7orf51 neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1 protein-coding 695-60 chr21 15258324 15258977 + 2 NA Intergenic Intergenic -193650 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 465-193 chr3 178639349 178639693 + 2 NA intron (NM_001278911, intron 1 of 4) MIRb|SINE|MIR 80671 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 468-2 chr1 18458705 18459025 + 2 NA Intergenic Intergenic -22065 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 292-122 chr13 52808670 52808867 + 2 NA Intergenic Intergenic -1282 NR_031582 100313778 NR_031582 ENSG00000211579 MIR759 hsa-mir-759 microRNA 759 ncRNA 298-246 chr2 215643793 215643976 + 2 NA intron (NR_037195, intron 5 of 9) MER102a|DNA|hAT-Charlie -74159 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 393-280 chr5 88575691 88575927 + 2 NA intron (NR_152235, intron 2 of 3) intron (NR_152235, intron 2 of 3) 91130 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 598-16 chr10 10183940 10184457 + 2 NA Intergenic Intergenic 125476 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 749-77 chr5 38766974 38767521 + 2 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -46974 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 502-192 chr4 24888420 24888772 + 2 NA intron (NM_001130726, intron 1 of 11) intron (NM_001130726, intron 1 of 11) 24382 NM_001330643 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 251-242 chr3 115387620 115387810 + 2 NA Intergenic Intergenic -235795 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 407-166 chr20 40807368 40807644 + 2 NA Intergenic Intergenic -92883 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 263-27 chr1 190225164 190225347 + 2 NA intron (NM_199051, intron 6 of 7) L1MA4|LINE|L1 250755 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 673-25 chr12 19025123 19025529 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -104407 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 256-246 chr22 49343731 49343965 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 199618 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 216-35 chr10 58590691 58590853 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 77900 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 350-419 chr5 152586408 152586600 + 2 NA Intergenic L2c|LINE|L2 -181225 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 364-22 chr1 107386784 107387041 + 2 NA intron (NM_001113226, intron 2 of 6) L1MB7|LINE|L1 238843 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 126-32 chr19 43933777 43933877 + 2 NA intron (NM_003425, intron 2 of 9) intron (NM_003425, intron 2 of 9) 1455 NM_003425 7596 Hs.381285 NM_003425 ENSG00000124459 ZNF45 KOX5|ZNF13 zinc finger protein 45 protein-coding 507-49 chr11 39355144 39355459 + 2 NA Intergenic Intergenic 706443 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 390-205 chr20 4672496 4672856 + 2 NA Intergenic Intergenic -13780 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 294-95 chr12 133107041 133107219 + 2 NA 3' UTR (NM_001300776, exon 4 of 4) 3' UTR (NM_001300776, exon 4 of 4) 23343 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 308-53 chr10 34041427 34041674 + 2 NA Intergenic Intergenic -268870 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 282-286 chr3 10639720 10639986 + 2 NA Intergenic LTR33|LTR|ERVL -13046 NR_046766 100874325 Hs.143004 NR_046766 ENSG00000224771 ATP2B2-IT2 - ATP2B2 intronic transcript 2 ncRNA 320-244 chr19 56621491 56621703 + 2 NA exon (NM_021216, exon 3 of 3) exon (NM_021216, exon 3 of 3) -21562 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 370-205 chr19 43974058 43974360 + 2 NA Intergenic L1PA11|LINE|L1 -9961 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 302-44 chr10 42381207 42381396 + 2 NA Intergenic LTR19C|LTR|ERV1 -13256 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 381-56 chr10 78492239 78492573 + 2 NA Intergenic L1MD1|LINE|L1 225064 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 422-110 chr16 76007250 76007653 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -269950 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 358-199 chr2 50064689 50064884 + 2 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -90583 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 294-219 chr2 79145847 79146116 + 2 NA Intergenic L1MA9|LINE|L1 -7554 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 349-119 chr12 22803103 22803387 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 178074 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 296-4 chr1 42685519 42685740 + 2 NA intron (NM_004559, intron 2 of 7) intron (NM_004559, intron 2 of 7) 2493 NR_132737 4904 Hs.473583 NM_004559 ENSG00000065978 YBX1 BP-8|CBF-A|CSDA2|CSDB|DBPB|EFI-A|MDR-NF1|NSEP-1|NSEP1|YB-1|YB1 Y-box binding protein 1 protein-coding 309-33 chr1 230953463 230953644 + 2 NA intron (NM_024525, intron 4 of 22) MIRb|SINE|MIR 25308 NM_024525 79573 Hs.424788 NM_024525 ENSG00000143643 TTC13 - tetratricopeptide repeat domain 13 protein-coding 365-272 chr3 189260041 189260237 + 2 NA intron (NM_198485, intron 4 of 5) MIR|SINE|MIR -19545 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 197-122 chr21 24959531 24959649 + 2 NA intron (NR_046198, intron 2 of 3) MIR|SINE|MIR 119040 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 312-151 chr14 67355153 67355391 + 2 NA intron (NM_015994, intron 1 of 8) intron (NM_015994, intron 1 of 8) 4532 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 544-112 chr2 53296570 53297048 + 2 NA Intergenic L1MA2|LINE|L1 -470974 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 506-66 chr12 41895169 41895582 + 2 NA Intergenic L1MEf|LINE|L1 131186 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 346-178 chr16 54764996 54765306 + 2 NA Intergenic Intergenic 83082 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 307-347 chr4 96382787 96383061 + 2 NA intron (NR_147149, intron 1 of 3) MER1B|DNA|hAT-Charlie 72221 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 701 chr1 163748678 163749227 + 2 NA Intergenic Intergenic -325761 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 403-256 chr5 116027676 116027878 + 2 NA TTS (NM_173800) TTS (NM_173800) -23689 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 381-173 chr19 52153577 52153818 + 2 NA TTS (NM_001102657) TTS (NM_001102657) -13759 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 285-167 chr18 40657673 40657905 + 2 NA Intergenic Intergenic 591503 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 452-73 chr13 112038563 112038805 + 2 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) -28465 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 284-446 chr9 112926957 112927188 + 2 NA Intergenic L1MC5a|LINE|L1 -36196 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 246-49 chr10 59521292 59521504 + 2 NA Intergenic Intergenic -158217 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 360-29 chr10 20133220 20133441 + 2 NA intron (NM_032812, intron 4 of 13) L1MA9|LINE|L1 316898 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 145-10 chr10 18653790 18653905 + 2 NA intron (NM_001351116, intron 2 of 11) intron (NM_001351116, intron 2 of 11) -2260 NM_001351117 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 326-281 chr2 204895010 204895318 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 349689 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 322-265 chr2 124928869 124929110 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 903702 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 456-76 chr13 51065670 51066072 + 2 NA intron (NR_003923, intron 1 of 16) intron (NR_003923, intron 1 of 16) 286 NR_003923 2974 Hs.411573 NM_004129 ENSG00000123201 GUCY1B2 GC-SB2 guanylate cyclase 1 soluble subunit beta 2 (pseudogene) pseudo 167-46 chr18 6994595 6994726 + 2 NA intron (NM_005559, intron 34 of 62) intron (NM_005559, intron 34 of 62) 39983 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 336-51 chr1 246079720 246080037 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 337534 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 338-382 chr4 58676896 58677142 + 2 NA Intergenic LTR49-int|LTR|ERV1 -140691 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 226-232 chr3 116461235 116461385 + 2 NA Intergenic Intergenic -15823 NM_001318915 4045 Hs.26409 NM_002338 ENSG00000185565 LSAMP IGLON3|LAMP limbic system associated membrane protein protein-coding 273-386 chr6 48362377 48362557 + 2 NA Intergenic Intergenic -293778 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 473-125 chr2 14536987 14537301 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -95573 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 234-40 chr10 73936462 73936643 + 2 NA Intergenic Intergenic -13775 NR_160937 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 310-501 chr8 9366306 9366568 + 2 NA Intergenic Intergenic 41386 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 309-458 chr5 133381472 133381697 + 2 NA intron (NM_015082, intron 4 of 15) L1ME3B|LINE|L1 46122 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 366-225 chr2 147443762 147444073 + 2 NA Intergenic Intergenic -400600 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 140-24 chr14 36085432 36085526 + 2 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 15052 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 560-94 chr20 15912487 15912860 + 2 NA intron (NR_130924, intron 1 of 1) intron (NR_130924, intron 1 of 1) 10641 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 325-117 chr12 2461227 2461407 + 2 NA intron (NM_199460, intron 5 of 49).2 L2a|LINE|L2 191541 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 384-398 chr9 79715199 79715411 + 2 NA intron (NM_001351563, intron 12 of 17) intron (NM_001351563, intron 12 of 17) -109225 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 200-254 chr7 48936598 48936751 + 2 NA Intergenic L1ME1|LINE|L1 12127 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 515-51 chr12 1504132 1504499 + 2 NA non-coding (NR_028415, exon 2 of 2) non-coding (NR_028415, exon 2 of 2) 3824 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 493-62 chr12 112290022 112290357 + 2 NA intron (NM_001109662, intron 7 of 75) AluJb|SINE|Alu 92242 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 299-479 chr9 16922354 16922542 + 2 NA Intergenic Intergenic -51778 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 567-4 chr1 59935240 59935777 + 2 NA Intergenic L1MA9|LINE|L1 -8710 NR_134982 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 296-8 chr1 83726462 83726671 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 133980 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 479-70 chr14 95739672 95740063 + 2 NA intron (NR_148060, intron 2 of 2) intron (NR_148060, intron 2 of 2) 24384 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 213-287 chr8 113596515 113596700 + 2 NA Intergenic L1ME3F|LINE|L1 -159668 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 177-67 chr17 73918789 73918909 + 2 NA Intergenic L1ME1|LINE|L1 -90312 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 313-520 chr8 67874981 67875172 + 2 NA Intergenic L1PA16|LINE|L1 -76970 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 361-216 chr2 72251518 72251769 + 2 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -103781 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 331-355 chr3 83683761 83683994 + 2 NA Intergenic MER53|DNA|hAT 1185698 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 201-166 chr3 184789414 184789522 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 -16313 NR_110043 101928992 Hs.507129 NR_110043 ENSG00000229433 LINC02069 - long intergenic non-protein coding RNA 2069 ncRNA 345-159 chr14 80132737 80133052 + 2 NA Intergenic MSTA1|LTR|ERVL-MaLR -78525 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 265-313 chr5 102328307 102328441 + 2 NA Intergenic L1ME3E|LINE|L1 -32090 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 162-96 chr4 70351565 70351691 + 2 NA Intergenic Intergenic -9132 NM_012390 26952 Hs.701334 NM_012390 ENSG00000109208 SMR3A P-B1|PBI|PRL5|PROL5 submaxillary gland androgen regulated protein 3A protein-coding 777-31 chr2 37790350 37790930 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 39071 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 261-318 chr5 123831838 123831984 + 2 NA Intergenic L1MA4A|LINE|L1 286494 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 228-316 chr7 39356720 39356918 + 2 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) -27685 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 645-57 chr2 116135451 116135945 + 2 NA Intergenic Intergenic 791883 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 597-89 chr3 3872197 3872744 + 2 NA Intergenic L2a|LINE|L2 -71595 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 531-22 chr10 54142204 54142729 + 2 NA intron (NM_001354411, intron 15 of 34) LOR1-int|LTR|ERV1 -343764 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 444-39 chr11 63296489 63296866 + 2 NA intron (NM_001039752, intron 2 of 9) intron (NM_001039752, intron 2 of 9) 6774 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 259-171 chr18 75945334 75945498 + 2 NA Intergenic Intergenic -177582 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 221-282 chr7 54217886 54218051 + 2 NA Intergenic L1M1|LINE|L1 -112729 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 400-177 chr2 155403665 155403921 + 2 NA Intergenic Intergenic 705098 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 431-197 chr4 60913041 60913423 + 2 NA Intergenic Intergenic -9387 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 187-158 chr7 30301004 30301183 + 2 NA intron (NM_147128, intron 1 of 4) intron (NM_147128, intron 1 of 4) -11203 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 296-78 chr11 88582255 88582528 + 2 NA intron (NM_001143831, intron 6 of 8) L2c|LINE|L2 77815 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 320-577 chr8 133155447 133155762 + 2 NA Intergenic Intergenic -35435 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 427-210 chr5 98640591 98640912 + 2 NA Intergenic Intergenic -127881 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 232-192 chr2 158383344 158383567 + 2 NA intron (NM_138803, intron 1 of 13) intron (NM_138803, intron 1 of 13) 73298 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 259-393 chr8 81474833 81475029 + 2 NA Intergenic L1MB3|LINE|L1 8302 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 580-107 chr3 23587312 23587809 + 2 NA intron (NM_001370225, intron 5 of 5) intron (NM_001370225, intron 5 of 5) -218395 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 335-507 chr7 54065348 54065635 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -253560 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 319-204 chr18 48497653 48497874 + 2 NA Intergenic L1MCa|LINE|L1 -41268 NM_001142397 9811 Hs.145230 NM_014772 ENSG00000134030 CTIF Gm672|KIAA0427 cap binding complex dependent translation initiation factor protein-coding 307-469 chr8 13735292 13735457 + 2 NA Intergenic Intergenic 105684 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 323-430 chr5 123182518 123182747 + 2 NA intron (NM_001136239, intron 7 of 7) intron (NM_001136239, intron 7 of 7) -92316 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 265-68 chr12 690350 690533 + 2 NA Intergenic MER4A1_|LTR|ERV1 -26996 NM_016533 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 322-382 chr4 90839198 90839495 + 2 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 604315 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 632-39 chr17 14098035 14098415 + 2 NA intron (NM_001303, intron 3 of 6) intron (NM_001303, intron 3 of 6) 28721 NM_001303 1352 Hs.462278 NM_001303 ENSG00000006695 COX10 - cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 protein-coding 362-221 chr2 108147274 108147555 + 2 NA Intergenic (TATATT)n|Simple_repeat|Simple_repeat 70427 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 348-77 chr11 30177211 30177441 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -53688 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 197-162 chr5 4187368 4187513 + 2 NA Intergenic MIRb|SINE|MIR -586041 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 529-92 chr19 20108274 20108622 + 2 NA intron (NM_007138, intron 3 of 3) AluSx1|SINE|Alu 30448 NM_007138 7643 Hs.55304 NM_007138 ENSG00000213988 ZNF90 HTF9 zinc finger protein 90 protein-coding 402-105 chr16 71500314 71500545 + 2 NA Intergenic Intergenic -11105 NM_006961 7567 Hs.660076 NM_006961 ENSG00000157429 ZNF19 KOX12 zinc finger protein 19 protein-coding 208-274 chr8 128258373 128258536 + 2 NA Intergenic MIR|SINE|MIR 108338 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 319-453 chr6 34103578 34103782 + 2 NA exon (NM_001256813, exon 2 of 11) exon (NM_001256813, exon 2 of 11) 2287 NM_001256813 2914 Hs.429018 NM_000841 ENSG00000124493 GRM4 GPRC1D|MGLUR4|mGlu4 glutamate metabotropic receptor 4 protein-coding 373-392 chr7 113012454 113012670 + 2 NA Intergenic L1MA8|LINE|L1 -16919 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 213-282 chr8 104795561 104795757 + 2 NA Intergenic Intergenic -206635 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 279-80 chr12 58242465 58242680 + 2 NA Intergenic Intergenic 154680 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 419-145 chr2 108107215 108107583 + 2 NA Intergenic Intergenic -54644 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 292-143 chr14 78212520 78212800 + 2 NA intron (NR_073547, intron 1 of 20) L1MEg|LINE|L1 42287 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 528-213 chr5 155459484 155459860 + 2 NA Intergenic Intergenic 445917 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 529-166 chr4 122659001 122659354 + 2 NA intron (NR_104126, intron 10 of 10) intron (NR_104126, intron 10 of 10) -38111 NM_021803 59067 Hs.567559 NM_021803 ENSG00000138684 IL21 CVID11|IL-21|Za11 interleukin 21 protein-coding 431-227 chr5 74316997 74317392 + 2 NA Intergenic Intergenic -5292 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 258-284 chr4 43356203 43356403 + 2 NA Intergenic L1MA7|LINE|L1 136240 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 241-287 chr5 11752602 11752776 + 2 NA intron (NM_001288717, intron 1 of 20) L1PA15|LINE|L1 151757 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 342-335 chr3 156781681 156781982 + 2 NA intron (NR_038387, intron 1 of 2) intron (NR_038387, intron 1 of 2) 30190 NR_003284 647033 Hs.745109 NR_003284 PA2G4P4 PA2G4L1 proliferation-associated 2G4 pseudogene 4 pseudo 245-17 chr1 170753800 170753957 + 2 NA Intergenic L1ME2|LINE|L1 89747 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 510-252 chr6 146965409 146965767 + 2 NA intron (NR_034115, intron 7 of 10) MSTA-int|LTR|ERVL-MaLR -161764 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 415-37 chr10 104367397 104367638 + 2 NA intron (NM_001008723, intron 5 of 17) intron (NM_001008723, intron 5 of 17) 13684 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 407-52 chr11 83858169 83858530 + 2 NA intron (NM_001142699, intron 16 of 27) intron (NM_001142699, intron 16 of 27) -175924 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 144-60 chr3 108421960 108422080 + 2 NA intron (NM_014981, intron 28 of 41) intron (NM_014981, intron 28 of 41) 107302 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 316-199 chr16 50401444 50401660 + 2 NA Intergenic Intergenic -6419 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 256-378 chr7 4372045 4372198 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie -237284 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 409-317 chr9 138085169 138085492 + 2 NA intron (NM_001243812, intron 35 of 45) L1MA5|LINE|L1 -40259 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 366-312 chr4 62454012 62454263 + 2 NA Intergenic Intergenic -292372 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 448-214 chr5 77373050 77373358 + 2 NA intron (NM_001029854, intron 9 of 20) L1ME2z|LINE|L1 119112 NM_018268 55255 Hs.482573 NM_018268 ENSG00000164253 WDR41 MSTP048 WD repeat domain 41 protein-coding 743-4 chr1 69973160 69973593 + 2 NA intron (NM_001370785, intron 8 of 26) L1PB1|LINE|L1 54054 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 398-394 chrX 82676580 82676909 + 2 NA Intergenic MLT2B3|LTR|ERVL -831546 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 230-194 chr2 209910694 209910886 + 2 NA intron (NM_032504, intron 28 of 63) intron (NM_032504, intron 28 of 63) -91775 NM_006916 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 340-501 chr7 17311173 17311353 + 2 NA intron (NM_001621, intron 2 of 10) intron (NM_001621, intron 2 of 10) 12611 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 318-84 chr10 105660513 105660738 + 2 NA Intergenic Intergenic 159708 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 186-92 chr2 210727090 210727270 + 2 NA Intergenic L1MC3|LINE|L1 109609 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 341-38 chr1 175693110 175693294 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 50393 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 634-104 chr3 83172388 83172811 + 2 NA Intergenic Intergenic 1186457 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 410-110 chr18 3564532 3564857 + 2 NA intron (NM_001242762, intron 6 of 9) L1MCa|LINE|L1 -29420 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 465-229 chr5 72784491 72784751 + 2 NA Intergenic Intergenic -31970 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 539-147 chr3 114244703 114245105 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -7326 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 290-84 chr11 76273972 76274153 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -67560 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 300-301 chr3 178330555 178330776 + 2 NA Intergenic Intergenic -88536 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 626-135 chr8 79433923 79434493 + 2 NA Intergenic L1ME3Cz|LINE|L1 102020 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 364-40 chr1 234669446 234669684 + 2 NA Intergenic Intergenic 23276 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 385-239 chr3 37503836 37504033 + 2 NA intron (NM_002207, intron 6 of 27) intron (NM_002207, intron 6 of 27) 51793 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 789-31 chr22 19553064 19553555 + 2 NA Intergenic L1MB5|LINE|L1 13530 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 222-11 chr1 155450284 155450463 + 2 NA intron (NM_018489, intron 4 of 27) L1MEf|LINE|L1 17193 NR_034180 645682 Hs.632482 NR_034180 ENSG00000237872 POU5F1P4 OCT3|OCT4|OTF-3|OTF3|Oct-3|Oct-4|Oct4-pg4|POU5F1|POU5FLC1 POU class 5 homeobox 1 pseudogene 4 pseudo 255-27 chr10 43929728 43929919 + 2 NA intron (NR_033846, intron 2 of 7) intron (NR_033846, intron 2 of 7) 17421 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 354-207 chr2 52155105 52155308 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -215442 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 416-11 chr1 110739931 110740215 + 2 NA Intergenic MIRb|SINE|MIR -65133 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 594-121 chr5 145306187 145306765 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 528866 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 721-64 chr4 63901256 63901669 + 2 NA Intergenic Intergenic 507988 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 371-390 chr8 110723167 110723504 + 2 NA Intergenic Intergenic 304098 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 630-120 chr6 113138264 113138712 + 2 NA Intergenic Intergenic 294959 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 277-11 chr1 77498694 77498857 + 2 NA intron (NM_012093, intron 10 of 13) intron (NM_012093, intron 10 of 13) 183883 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 231-223 chr3 42977362 42977548 + 2 NA Intergenic L2a|LINE|L2 -1856 NM_001129908 729085 Hs.729533 NM_001129908 ENSG00000144649 GASK1A C3orf41|FAM198A golgi associated kinase 1A protein-coding 283-5 chr1 33461390 33461636 + 2 NA Intergenic Intergenic -11132 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 287-73 chr10 107233383 107233568 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -68769 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 238-170 chr2 58352572 58352735 + 2 NA Intergenic Intergenic 76776 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 296-153 chr15 42616960 42617192 + 2 NA intron (NM_020759, intron 3 of 32) intron (NM_020759, intron 3 of 32) 41470 NM_020759 57519 Hs.122061 NM_020759 ENSG00000159433 STARD9 KIF16A StAR related lipid transfer domain containing 9 protein-coding 583-149 chr7 40855713 40856224 + 2 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 123971 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 520-81 chr14 43112820 43113187 + 2 NA Intergenic Intergenic 1394280 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 448-218 chr5 96265212 96265566 + 2 NA intron (NR_130776, intron 1 of 4) MLT2B2|LTR|ERVL 166770 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 329-586 chr8 119280355 119280546 + 2 NA Intergenic L2c|LINE|L2 -33593 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 293-189 chr2 77797155 77797327 + 2 NA intron (NR_110288, intron 3 of 3) intron (NR_110288, intron 3 of 3) -118693 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 272-394 chr6 111128013 111128244 + 2 NA intron (NM_018593, intron 1 of 5) intron (NM_018593, intron 1 of 5) 14294 NR_145796 109623478 NR_145796 SNORD166 - small nucleolar RNA, C/D box 166 snoRNA 430-177 chr21 19498132 19498404 + 2 NA Intergenic Intergenic 401487 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 638-38 chr14 46517430 46517936 + 2 NA Intergenic L1MA4|LINE|L1 46324 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 547-241 chr8 81529974 81530377 + 2 NA intron (NR_144370, intron 1 of 3) L1MB4|LINE|L1 1215 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 364-227 chr2 137822043 137822326 + 2 NA Intergenic HERVH-int|LTR|ERV1 105748 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 233-86 chr13 85910772 85910925 + 2 NA Intergenic Intergenic -111429 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 582-157 chr8 110763036 110763375 + 2 NA Intergenic L1PREC2|LINE|L1 264228 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 319-291 chr20 42605895 42606205 + 2 NA intron (NM_133170, intron 7 of 31) MER5A1|DNA|hAT-Charlie -79433 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 563-180 chr8 53631451 53631849 + 2 NA Intergenic MER74A|LTR|ERVL -107685 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 137-6 chr10 20185661 20185762 + 2 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) -366259 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 612-126 chr7 24987560 24987989 + 2 NA Intergenic Intergenic -7596 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 235-319 chr7 17703117 17703245 + 2 NA Intergenic L1MA9|LINE|L1 -144272 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 276-35 chr1 210732326 210732495 + 2 NA intron (NM_002238, intron 10 of 10) intron (NM_002238, intron 10 of 10) 400964 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 293-292 chr4 31081247 31081492 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -89775 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 702-81 chr5 45396859 45397261 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 299320 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 280-346 chr6 46053493 46053716 + 2 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 26744 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 243-193 chr2 22110010 22110219 + 2 NA Intergenic Intergenic -399462 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 329-405 chr4 42267190 42267474 + 2 NA Intergenic MER110A|LTR|ERV1 -114677 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 426-68 chr13 76038863 76039119 + 2 NA Intergenic Intergenic -103859 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 284-9 chr1 78952024 78952213 + 2 NA intron (NM_022159, intron 2 of 14) intron (NM_022159, intron 2 of 14) 54612 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 202-252 chr8 82570184 82570374 + 2 NA Intergenic Intergenic -341825 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 203-184 chr5 106487864 106488056 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 523054 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 233-192 chr2 175392724 175392952 + 2 NA Intergenic Intergenic -211128 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 663-12 chr10 53988482 53988854 + 2 NA intron (NM_001354411, intron 22 of 34) intron (NM_001354411, intron 22 of 34) -497562 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 219-16 chr1 161990353 161990520 + 2 NA intron (NM_001347700, intron 6 of 7) Tigger1|DNA|TcMar-Tigger 34029 NM_015441 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 380-294 chr5 5300645 5300946 + 2 NA intron (NM_139056, intron 18 of 22) intron (NM_139056, intron 18 of 22) -121882 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 227-378 chr8 125670534 125670743 + 2 NA Intergenic Intergenic 238429 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 721-37 chr2 138171871 138172548 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 70325 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 229-239 chr22 19652961 19653177 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -61434 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 282-481 chr9 30354205 30354379 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 54162 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 298-311 chr4 10391221 10391460 + 2 NA Intergenic L1MA3|LINE|L1 66086 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 307-517 chr9 78644569 78644789 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 347554 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 448-124 chr2 145993530 145993891 + 2 NA Intergenic L1M4b|LINE|L1 -593347 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 377-250 chr20 52418476 52418791 + 2 NA Intergenic Intergenic -202205 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 268-369 chr7 50125900 50126040 + 2 NA intron (NM_001161834, intron 2 of 8) L1MA9|LINE|L1 29884 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 299-184 chr18 78464444 78464647 + 2 NA Intergenic L1MA5|LINE|L1 -470818 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 347-204 chr2 41031802 41032011 + 2 NA Intergenic Intergenic -519471 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 339-221 chr17 82452982 82453186 + 2 NA Intergenic AluSx|SINE|Alu -2253 NR_036517 79415 Hs.163113 NM_001033046 ENSG00000178927 CYBC1 C17orf62|Eros cytochrome b-245 chaperone 1 protein-coding 329-246 chr19 35081177 35081462 + 2 NA intron (NR_024561, intron 2 of 3) MLT1K|LTR|ERVL-MaLR 24952 NR_024561 100128675 Hs.633989 NR_024561 ENSG00000227392 HPN-AS1 - HPN antisense RNA 1 ncRNA 607-81 chr2 123727536 123728060 + 2 NA Intergenic Intergenic 297376 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 397-217 chr4 14958867 14959223 + 2 NA intron (NR_038857, intron 7 of 7) intron (NR_038857, intron 7 of 7) 43000 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-DT CPEB2-AS1 CPEB2 divergent transcript ncRNA 364-283 chr3 107805657 107805959 + 2 NA 3' UTR (NM_001142568, exon 18 of 18) 3' UTR (NM_001142568, exon 18 of 18) 72260 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 215-46 chr11 13187767 13187977 + 2 NA Intergenic L1MEg|LINE|L1 -88780 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 582-98 chr3 26340666 26341022 + 2 NA Intergenic L1M2a|LINE|L1 -281962 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 270-356 chr7 34696054 34696240 + 2 NA intron (NM_001300934, intron 2 of 6) L1PB4|LINE|L1 37908 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 368-433 chr7 110728558 110728830 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -362312 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 197-69 chr16 26940213 26940354 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -126644 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 341-500 chr7 90991742 90991988 + 2 NA intron (NM_012395, intron 9 of 13) intron (NM_012395, intron 9 of 13) -272568 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 314-536 chr7 56145123 56145288 + 2 NA Intergenic MER9a2|LTR|ERVK -28788 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 271-35 chr1 235700339 235700536 + 2 NA intron (NM_000081, intron 45 of 52) L1PA8|LINE|L1 -49683 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 293-105 chr13 76124686 76124881 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -189651 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 407-214 chr4 813876 814270 + 2 NA intron (NM_006651, intron 2 of 3) MER54B|LTR|ERVL 12056 NM_006651 10815 Hs.478930 NM_006651 ENSG00000168993 CPLX1 CPX-I|CPX1|EIEE63 complexin 1 protein-coding 685-20 chr13 70834891 70835417 + 2 NA Intergenic MIRb|SINE|MIR -179987 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 186-182 chrX 68161126 68161239 + 2 NA intron (NM_002547, intron 15 of 24) L1ME3E|LINE|L1 272313 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 369-54 chr11 30795929 30796250 + 2 NA Intergenic Intergenic 196597 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 200-110 chr18 53322412 53322571 + 2 NA intron (NM_005215, intron 14 of 28) intron (NM_005215, intron 14 of 28) 85390 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 217-159 chr18 7128722 7128912 + 2 NA Intergenic LTR16D2|LTR|ERVL -11020 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 219-264 chr4 126038320 126038486 + 2 NA Intergenic Intergenic 531144 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 423-72 chr13 113181820 113182168 + 2 NA intron (NM_001127202, intron 9 of 13) LTR86A1|LTR|ERVL 23340 NM_001256134 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 231-220 chr3 30673538 30673761 + 2 NA intron (NM_001024847, intron 5 of 7) intron (NM_001024847, intron 5 of 7) 67048 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 368-367 chr5 97760104 97760447 + 2 NA Intergenic LTR78|LTR|ERV1 -80483 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 207-110 chr18 3642504 3642659 + 2 NA intron (NM_001242761, intron 7 of 11) MIR|SINE|MIR 38844 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 337-71 chr10 112096576 112096852 + 2 NA Intergenic Intergenic 87051 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 313-244 chr2 41482180 41482390 + 2 NA Intergenic Intergenic -395270 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 333-70 chr10 108223817 108224000 + 2 NA Intergenic Intergenic -154615 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 252-437 chr8 127857105 127857334 + 2 NA intron (NR_003367, intron 1 of 8) AluSx1|SINE|Alu 61257 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 378-308 chr4 63121859 63122224 + 2 NA Intergenic Intergenic -960276 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 194-75 chr16 84272636 84272767 + 2 NA Intergenic (CATC)n|Simple_repeat|Simple_repeat -22177 NM_001282467 58189 Hs.36688 NM_021197 ENSG00000103175 WFDC1 PS20 WAP four-disulfide core domain 1 protein-coding 295-262 chr20 58854169 58854430 + 2 NA exon (NM_001077490, exon 1 of 13) exon (NM_001077490, exon 1 of 13) 1318 NM_001309883 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 236-201 chr20 11580620 11580823 + 2 NA Intergenic Intergenic 289994 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 587-35 chr12 7248769 7249182 + 2 NA Intergenic LTR66|LTR|ERVL -55357 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 482-303 chrX 56684480 56684735 + 2 NA Intergenic L1PA8A|LINE|L1 -44636 NM_001348129 550643 Hs.355559 NM_001348129 ENSG00000204272 NBDY LINC01420|NoBody negative regulator of P-body association protein-coding 293-455 chr8 126333676 126333964 + 2 NA Intergenic Intergenic 8325 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 610-122 chr4 11941587 11942033 + 2 NA Intergenic MER72B|LTR|ERV1 158632 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 544-154 chr3 152875823 152876173 + 2 NA Intergenic MIR|SINE|MIR 40867 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 500-96 chr15 54896571 54896964 + 2 NA Intergenic Intergenic -159980 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 319-75 chr10 95086655 95086952 + 2 NA Intergenic L1MA2|LINE|L1 -17306 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 408-324 chr7 118435345 118435743 + 2 NA Intergenic L1PREC2|LINE|L1 210840 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 455-283 chr8 115408532 115408908 + 2 NA 3' UTR (NM_001282903, exon 7 of 7) 3' UTR (NM_001282903, exon 7 of 7) 259293 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 338-527 chr8 31381678 31381894 + 2 NA Intergenic Intergenic -257966 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 344-120 chr13 47314580 47314810 + 2 NA Intergenic L1MDa|LINE|L1 -417619 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 340-198 chr17 13242302 13242497 + 2 NA Intergenic L2b|LINE|L2 64361 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 513-166 chr21 27829488 27829805 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 107267 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 397-181 chr2 239020786 239021101 + 2 NA Intergenic Intergenic 47971 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 342-34 chr1 167005657 167005858 + 2 NA intron (NM_032858, intron 8 of 11) L1MC4|LINE|L1 16477 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 256-392 chr7 85179923 85180113 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -58087 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 316-495 chr6 137478184 137478428 + 2 NA Intergenic MLT2C1|LTR|ERVL 16088 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 363-148 chr14 84809630 84809966 + 2 NA Intergenic Intergenic -462134 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 337-5 chr1 58757504 58757699 + 2 NA Intergenic MIRb|SINE|MIR 26446 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 271-445 chr8 92474725 92474991 + 2 NA Intergenic Intergenic 180636 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 376-412 chr8 126767808 126768020 + 2 NA Intergenic Intergenic -209436 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 373-42 chr10 10411558 10411759 + 2 NA Intergenic L2-3_Crp|LINE|L2 50691 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 239-152 chr18 76288343 76288560 + 2 NA Intergenic L1MC4|LINE|L1 78941 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 203-17 chr1 220373926 220374100 + 2 NA Intergenic L1ME3G|LINE|L1 -101560 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 362-454 chr8 140336181 140336490 + 2 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 121409 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 424-294 chr9 111132476 111132791 + 2 NA Intergenic AluSz|SINE|Alu -93635 NM_001351397 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 278-58 chr11 107080128 107080302 + 2 NA Intergenic L1ME1|LINE|L1 -61739 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 454-182 chr2 194975782 194976061 + 2 NA Intergenic Intergenic 245326 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 446-166 chr20 42063834 42064245 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -445662 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 454-80 chr13 20748655 20749080 + 2 NA intron (NM_001318939, intron 2 of 4) AluSx|SINE|Alu 25091 NM_174928 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 EEF1A lysine methyltransferase 1 protein-coding 373-128 chr15 49728921 49729266 + 2 NA Intergenic L1M2|LINE|L1 108045 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 416-210 chr22 33140097 33140442 + 2 NA Intergenic L1M4b|LINE|L1 31740 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 327-220 chr19 28111647 28111892 + 2 NA Intergenic L1PB3|LINE|L1 -317829 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 290-378 chr6 3554195 3554349 + 2 NA Intergenic L1MD2|LINE|L1 -97713 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 269-338 chr6 41165971 41166180 + 2 NA Intergenic L1ME1|LINE|L1 -2889 NM_018965 54209 Hs.435295 NM_018965 ENSG00000095970 TREM2 PLOSL2|TREM-2|Trem2a|Trem2b|Trem2c triggering receptor expressed on myeloid cells 2 protein-coding 310-495 chr7 110725815 110726048 + 2 NA intron (NM_001350963, intron 5 of 5) MIR|SINE|MIR -365075 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 544-122 chr2 125049319 125049855 + 2 NA Intergenic LTR86A2|LTR|ERVL 1024300 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 301-16 chr1 181637737 181637902 + 2 NA intron (NM_001205293, intron 6 of 47) L2c|LINE|L2 154302 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 260-170 chr17 53997084 53997298 + 2 NA Intergenic L2|LINE|L2 174264 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 352-370 chr4 71670301 71670491 + 2 NA Intergenic AluSz|SINE|Alu 113683 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 375-9 chr1 70263281 70263588 + 2 NA intron (NM_030816, intron 12 of 12) intron (NM_030816, intron 12 of 12) 42054 NM_001350613 9295 Hs.479693 NM_004768 ENSG00000116754 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine and arginine rich splicing factor 11 protein-coding 470-92 chr16 76477009 76477451 + 2 NA intron (NR_136213, intron 11 of 23) intron (NR_136213, intron 11 of 23) -157768 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 491-170 chr3 102926354 102926693 + 2 NA Intergenic Intergenic 491508 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 265-106 chr14 64462899 64463143 + 2 NA intron (NM_001304508, intron 2 of 2) intron (NM_001304508, intron 2 of 2) -2478 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 341-536 chr8 124127136 124127340 + 2 NA intron (NR_103547, intron 1 of 4) intron (NR_103547, intron 1 of 4) 44284 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 199-5 chr1 65913082 65913218 + 2 NA promoter-TSS (NM_001297441) promoter-TSS (NM_001297441) -95 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 230-243 chr3 155247583 155247748 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 6720 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 246-177 chr19 27595777 27595938 + 2 NA Intergenic ALR/Alpha|Satellite|centr -197574 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 277-465 chrX 77743695 77743918 + 2 NA intron (NM_000489, intron 1 of 34) L1M2|LINE|L1 42410 NM_138270 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 466-47 chr11 48661512 48661852 + 2 NA Intergenic ALR/Alpha|Satellite|centr 172889 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 352-389 chr4 133194878 133195196 + 2 NA TTS (NM_032961) TTS (NM_032961) 45743 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 460-259 chr6 60901911 60902319 + 2 NA Intergenic L1PA10|LINE|L1 -672015 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 347-156 chr15 80620301 80620577 + 2 NA Intergenic Intergenic 39336 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 556-136 chr22 33746471 33746929 + 2 NA intron (NR_038950, intron 6 of 6) intron (NR_038950, intron 6 of 6) 21714 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 410-80 chr13 85486067 85486398 + 2 NA intron (NR_046989, intron 1 of 3) AluSc5|SINE|Alu 122629 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 229-233 chr21 20212218 20212434 + 2 NA Intergenic Intergenic 46359 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 165-43 chr18 35542934 35543027 + 2 NA Intergenic L1ME4a|LINE|L1 -45020 NM_194281 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 201-20 chr1 241029855 241029994 + 2 NA intron (NM_001350116, intron 3 of 16) intron (NM_001350116, intron 3 of 16) -102348 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 272-37 chr10 19344752 19344926 + 2 NA intron (NM_001142308, intron 24 of 39) L1MD2|LINE|L1 296038 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 286-150 chr16 64513422 64513629 + 2 NA Intergenic L1MB5|LINE|L1 608538 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 493-140 chr2 52173976 52174432 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -196444 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 558-61 chr15 63982504 63983018 + 2 NA intron (NM_014326, intron 3 of 11) MIR|SINE|MIR 54487 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 188-149 chr4 39761458 39761637 + 2 NA intron (NM_005339, intron 4 of 6) intron (NM_005339, intron 4 of 6) 63411 NM_001312646 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 540-122 chr2 150283397 150283798 + 2 NA Intergenic Intergenic -26590 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 569-60 chr14 77938659 77939082 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 138761 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 416-207 chr21 28519000 28519304 + 2 NA Intergenic L1MB4|LINE|L1 -20166 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 202-46 chr11 113868242 113868370 + 2 NA intron (NM_020886, intron 1 of 24) intron (NM_020886, intron 1 of 24) 7266 NM_001346270 57646 Hs.503891 NM_020886 ENSG00000048028 USP28 - ubiquitin specific peptidase 28 protein-coding 307-269 chr2 233232903 233233205 + 2 NA Intergenic L2a|LINE|L2 -18517 NM_198890 55054 Hs.529322 NM_017974 ENSG00000085978 ATG16L1 APG16L|ATG16A|ATG16L|IBD10|WDR30 autophagy related 16 like 1 protein-coding 252-393 chr7 24829728 24829960 + 2 NA intron (NR_104111, intron 15 of 21) intron (NR_104111, intron 15 of 21) 62777 NM_145321 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 309-294 chr20 8556851 8557134 + 2 NA intron (NM_182734, intron 3 of 32) (AATA)n|Simple_repeat|Simple_repeat -274193 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 424-296 chrUn_KI270751v1 150156 150501 + 2 NA NA (CCATT)n|Simple_repeat|Simple_repeat NA NA 517-25 chr1 246077952 246078361 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 339256 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 404-200 chr21 28365867 28366177 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -137355 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 220-157 chr2 43704706 43704878 + 2 NA intron (NM_172069, intron 9 of 29) intron (NM_172069, intron 9 of 29) -28363 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 325-337 chr3 10943321 10943562 + 2 NA Intergenic AluJb|SINE|Alu -49293 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 182-107 chr3 53054205 53054349 + 2 NA Intergenic AluSz|SINE|Alu -8204 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 409-320 chrX 77265951 77266260 + 2 NA Intergenic L1MCa|LINE|L1 -181284 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 210-208 chr4 123222088 123222235 + 2 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -174634 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 356-272 chr2 196412626 196412943 + 2 NA intron (NM_020760, intron 2 of 28) MER113|DNA|hAT-Charlie -50607 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 285-32 chr10 26207589 26207773 + 2 NA intron (NM_017433, intron 34 of 34) L1MA8|LINE|L1 -8626 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 294-471 chr8 90312506 90312661 + 2 NA intron (NR_051989, intron 2 of 3) THE1D|LTR|ERVL-MaLR 91095 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 306-381 chr5 15473048 15473279 + 2 NA Intergenic Intergenic -27017 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 266-340 chr5 114855574 114855740 + 2 NA Intergenic L1MA4A|LINE|L1 -82244 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 282-141 chr15 38548470 38548702 + 2 NA intron (NM_001306086, intron 2 of 14) L1MC5|LINE|L1 16228 NM_005739 10125 Hs.591127 NM_005739 ENSG00000172575 RASGRP1 CALDAG-GEFI|CALDAG-GEFII|RASGRP RAS guanyl releasing protein 1 protein-coding 254-419 chr8 110072671 110072905 + 2 NA Intergenic L1PA14|LINE|L1 -97017 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 818-12 chr11 97763970 97764492 + 2 NA Intergenic Intergenic 1255806 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 789-2 chr1 221367717 221368391 + 2 NA Intergenic L1MDa|LINE|L1 -31758 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 329-66 chr10 82179920 82180158 + 2 NA intron (NM_001165973, intron 2 of 10) L1MB1|LINE|L1 52881 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 328-84 chr11 50405714 50405967 + 2 NA Intergenic ALR/Alpha|Satellite|centr -3307 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 212-2 chr1 23359396 23359541 + 2 NA TTS (NM_001077195) TTS (NM_001077195) 8918 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 470-146 chr2 206875150 206875476 + 2 NA Intergenic L1ME4a|LINE|L1 -64205 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 237-317 chr5 175421146 175421277 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 22971 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 411-196 chr3 193843744 193844095 + 2 NA promoter-TSS (NR_146718) promoter-TSS (NR_146718) 90 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 181-31 chr12 21044178 21044313 + 2 NA intron (NM_001009562, intron 6 of 12) intron (NM_001009562, intron 6 of 12) 28549 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 462-177 chr3 60204202 60204466 + 2 NA intron (NM_001320900, intron 6 of 9) AluJb|SINE|Alu -123425 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 389-264 chr4 73706748 73707003 + 2 NA Intergenic Intergenic -33694 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 209-168 chr2 222197604 222197758 + 2 NA Intergenic Intergenic -100466 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 414-144 chr2 21385863 21386117 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 262004 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 348-486 chr7 19268621 19268911 + 2 NA Intergenic Intergenic -123345 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 411-24 chr10 32174763 32175087 + 2 NA Intergenic L1MB5|LINE|L1 -118500 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 328-544 chr7 97548205 97548508 + 2 NA Intergenic Intergenic -183730 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 289-259 chr20 7357634 7357841 + 2 NA intron (NR_110610, intron 1 of 2) intron (NR_110610, intron 1 of 2) 10304 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 558-168 chr5 23776577 23776975 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -174572 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 296-436 chr7 37685831 37686120 + 2 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 2209 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 273-371 chr5 153268597 153268798 + 2 NA Intergenic L1MEg|LINE|L1 -221827 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 379-103 chr15 77497354 77497650 + 2 NA Intergenic Intergenic -28093 NR_135692 101929457 Hs.637111 NR_135692 ENSG00000259362 LOC101929457 - uncharacterized LOC101929457 ncRNA 112-38 chr4 185706401 185706471 + 2 NA intron (NM_001145672, intron 1 of 20) intron (NM_001145672, intron 1 of 20) -49467 NM_001145674 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 211-222 chr5 9489139 9489291 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -22118 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 256-344 chr5 155215666 155215904 + 2 NA Intergenic Intergenic 202030 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 497-152 chr20 15958744 15959082 + 2 NA intron (NM_001351663, intron 12 of 17) MLT1A|LTR|ERVL-MaLR 26969 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 282-235 chr2 164449279 164449497 + 2 NA Intergenic Intergenic 119107 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 748-11 chr1 229673603 229674319 + 2 NA Intergenic Intergenic 47714 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 306-463 chr7 33317076 33317252 + 2 NA intron (NM_198428, intron 9 of 22) L1ME2z|LINE|L1 187600 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 471-20 chr10 14325179 14325504 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 5543 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 248-294 chr4 160548124 160548330 + 2 NA Intergenic Intergenic -770443 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 247-192 chr2 63750899 63751056 + 2 NA Intergenic L1M5|LINE|L1 -89987 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 326-269 chr2 159654132 159654454 + 2 NA Intergenic Intergenic -37692 NM_001289975 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 345-267 chr2 89808006 89808277 + 2 NA Intergenic Intergenic -170234 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 352-312 chr3 28706529 28706724 + 2 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 131348 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 489-164 chr21 24390924 24391312 + 2 NA Intergenic Intergenic -37622 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 531-267 chr9 93756552 93757023 + 2 NA Intergenic L1PBb|LINE|L1 -62570 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 191-31 chr11 43197486 43197643 + 2 NA Intergenic Intergenic 71805 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 380-40 chr10 43353958 43354166 + 2 NA Intergenic Intergenic -17574 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 428-270 chr7 18606440 18606760 + 2 NA intron (NM_001321893, intron 7 of 11) intron (NM_001321893, intron 7 of 11) 97330 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 338-21 chr1 105817547 105817842 + 2 NA Intergenic Intergenic -198759 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 386-47 chr11 21743946 21744210 + 2 NA Intergenic L3b|LINE|CR1 -449007 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 384-339 chr7 15783920 15784205 + 2 NA Intergenic L1MA3|LINE|L1 95684 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 318-233 chr19 32513031 32513196 + 2 NA Intergenic L1M4|LINE|L1 -68077 NM_004708 9141 Hs.443831 NM_004708 ENSG00000105185 PDCD5 TFAR19 programmed cell death 5 protein-coding 431-293 chr8 87931748 87932118 + 2 NA Intergenic Intergenic -57918 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 294-455 chr8 31341035 31341186 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -298642 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 553-85 chr17 63042957 63043321 + 2 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 76904 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 384-397 chr9 71707319 71707589 + 2 NA intron (NM_013390, intron 17 of 23) intron (NM_013390, intron 17 of 23) 61059 NM_001349784 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 336-405 chr4 46228673 46228981 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -104773 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 312-269 chr2 157535520 157535747 + 2 NA intron (NM_001111031, intron 8 of 8) AluSx|SINE|Alu 61927 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 237-301 chr5 95141731 95141924 + 2 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) -59961 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 165-75 chr3 5478835 5478937 + 2 NA Intergenic Intergenic -228631 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 258-227 chr20 14265270 14265449 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 72253 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 138-86 chr7 111430386 111430516 + 2 NA intron (NM_001350961, intron 4 of 7) intron (NM_001350961, intron 4 of 7) 131840 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 279-343 chr5 144095751 144095990 + 2 NA Intergenic Intergenic 74789 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 158-96 chr5 131713622 131713761 + 2 NA intron (NM_133372, intron 6 of 17) L2b|LINE|L2 -78462 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 372-433 chr6 66056671 66056954 + 2 NA Intergenic L1MCa|LINE|L1 268933 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 534-147 chr21 30774185 30774579 + 2 NA Intergenic L1MB8|LINE|L1 -18954 NM_181619 337977 Hs.567837 NM_181619 ENSG00000187005 KRTAP21-1 KAP21.1 keratin associated protein 21-1 protein-coding 221-289 chr7 124170334 124170514 + 2 NA Intergenic Intergenic -137357 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 137-70 chr5 21128285 21128411 + 2 NA Intergenic LTR49|LTR|ERV1 -331132 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 490-54 chr11 31893749 31894126 + 2 NA Intergenic Intergenic 67370 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 316-47 chr1 238599311 238599594 + 2 NA Intergenic Intergenic -113435 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 243-473 chr9 37820756 37820956 + 2 NA intron (NM_001286810, intron 2 of 6) L1MEi|LINE|L1 20059 NM_024345 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 417-195 chr4 40028751 40029036 + 2 NA Intergenic AluSp|SINE|Alu -27957 NM_018177 55728 Hs.391463 NM_018177 ENSG00000078177 N4BP2 B3BP NEDD4 binding protein 2 protein-coding 391-38 chr10 51019481 51019742 + 2 NA intron (NM_001098512, intron 1 of 17) L1M4|LINE|L1 28723 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 516-272 chr9 106240397 106240782 + 2 NA Intergenic Intergenic -360339 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 440-249 chr8 87104870 87105149 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 238594 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 304-139 chr14 45442267 45442524 + 2 NA Intergenic Intergenic -189193 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 208-121 chr2 97974418 97974616 + 2 NA intron (NM_015348, intron 1 of 40) L1ME1|LINE|L1 21431 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 571-9 chr10 18388845 18389245 + 2 NA intron (NM_201590, intron 1 of 12) intron (NM_201590, intron 1 of 12) -11530 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 299-307 chr4 164866 165038 + 2 NA TTS (NM_001289930) TTS (NM_001289930) 36831 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 389-151 chr19 39752764 39753125 + 2 NA Intergenic L1M1|LINE|L1 -14915 NM_001828 1178 Hs.889 NM_001828 ENSG00000105205 CLC GAL10|Gal-10|LGALS10|LGALS10A|LPPL_HUMAN Charcot-Leyden crystal galectin protein-coding 437-134 chr2 77418882 77419271 + 2 NA intron (NR_146416, intron 1 of 1) L2a|LINE|L2 103300 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 529-192 chr6 20072301 20072704 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 139967 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 235-234 chr3 104080241 104080438 + 2 NA Intergenic Intergenic -556223 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 249-311 chr4 163408736 163408901 + 2 NA Intergenic Intergenic 64716 NM_001317091 4889 Hs.519058 NM_006174 ENSG00000164129 NPY5R NPY5-R|NPYR5|NPYY5-R neuropeptide Y receptor Y5 protein-coding 291-102 chr12 77038828 77039064 + 2 NA intron (NM_203394, intron 7 of 12) L1ME1|LINE|L1 26623 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 217-120 chr14 75485114 75485305 + 2 NA Intergenic Intergenic -37260 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 390-103 chr14 70806611 70806955 + 2 NA intron (NM_033141, intron 1 of 12) intron (NM_033141, intron 1 of 12) 2388 NM_001284230 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 407-343 chr9 76852846 76853142 + 2 NA intron (NM_001308048, intron 2 of 17) intron (NM_001308048, intron 2 of 17) 53093 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 257-159 chr18 64215404 64215611 + 2 NA intron (NR_033983, intron 2 of 2) L1M5|LINE|L1 44548 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 298-210 chr2 50370801 50370957 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -23123 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 409-35 chr11 20959586 20959963 + 2 NA intron (NM_201551, intron 11 of 18) L1PB1|LINE|L1 290188 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 244-40 chr10 109309673 109309882 + 2 NA Intergenic Intergenic 613469 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 193-42 chr11 96349464 96349638 + 2 NA Intergenic L1PA11|LINE|L1 -6356 NM_032427 84441 Hs.428214 NM_032427 ENSG00000184384 MAML2 MAM-3|MAM2|MAM3|MLL-MAML2 mastermind like transcriptional coactivator 2 protein-coding 378-404 chr7 51787232 51787539 + 2 NA Intergenic L1M5|LINE|L1 -394129 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 489-171 chr3 8332529 8332872 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 168958 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 240-103 chr12 22980390 22980610 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -195136 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 368-438 chr7 146704413 146704722 + 2 NA Intergenic Intergenic -69704 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 299-296 chr3 122274737 122274975 + 2 NA intron (NM_001178065, intron 4 of 6) intron (NM_001178065, intron 4 of 6) -50392 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 295-28 chr1 193855275 193855494 + 2 NA Intergenic Intergenic 550639 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 417-81 chr14 52324248 52324646 + 2 NA intron (NM_000956, intron 1 of 1) MER74B|LTR|ERVL 10135 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 242-355 chr6 159897830 159897978 + 2 NA intron (NM_001366704, intron 1 of 1) AluSx|SINE|Alu 6916 NM_002377 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 408-362 chrX 64856357 64856719 + 2 NA Intergenic L2a|LINE|L2 119912 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 345-481 chr7 3507652 3507854 + 2 NA intron (NM_152744, intron 1 of 44) L2c|LINE|L2 206501 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 141-78 chr6 162968624 162968731 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 85484 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 501-258 chr8 76224824 76225138 + 2 NA Intergenic Intergenic -181673 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 401-145 chr19 34891042 34891256 + 2 NA TTS (NR_046222) TTS (NR_046222) 7794 NR_046222 100652909 Hs.374015 NR_046222 ENSG00000271649 LINC00904 - long intergenic non-protein coding RNA 904 ncRNA 431-203 chr4 85589201 85589571 + 2 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) 114236 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 246-350 chr6 71554561 71554750 + 2 NA Intergenic L1PBa|LINE|L1 133628 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 254-263 chr4 87325 87516 + 2 NA exon (NM_182524, exon 4 of 4) exon (NM_182524, exon 4 of 4) 34099 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 319-271 chr2 168648310 168648614 + 2 NA intron (NM_001256126, intron 4 of 10) L1PA14|LINE|L1 65519 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 277-92 chr12 43344315 43344490 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 189087 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 344-62 chr10 101628799 101629078 + 2 NA intron (NR_136613, intron 4 of 7) intron (NR_136613, intron 4 of 7) -27441 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 333-119 chr12 114230259 114230475 + 2 NA Intergenic Intergenic 11403 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 290-59 chr10 83046280 83046565 + 2 NA Intergenic LTR40A1|LTR|ERVL 630667 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 410-254 chr5 142451459 142451774 + 2 NA intron (NR_120664, intron 3 of 3) intron (NR_120664, intron 3 of 3) 126323 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 386-357 chr8 109885201 109885554 + 2 NA Intergenic MIRb|SINE|MIR 90394 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 285-439 chr8 135148330 135148580 + 2 NA Intergenic Intergenic -85676 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 214-166 chr2 105192382 105192556 + 2 NA Intergenic L1PB4|LINE|L1 48356 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 305-353 chr3 94066434 94066712 + 2 NA intron (NM_022072, intron 2 of 5) L2|LINE|L2 3512 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 166-126 chrX 81447933 81448060 + 2 NA Intergenic MER4D1|LTR|ERV1 245894 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 223-236 chr4 14597851 14598050 + 2 NA intron (NR_126435, intron 4 of 6) MIR|SINE|MIR 290219 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 338-210 chr17 33681086 33681350 + 2 NA intron (NM_001094, intron 1 of 9) MLT1L|LTR|ERVL-MaLR -147458 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 412-276 chr6 40821171 40821556 + 2 NA Intergenic Intergenic 201917 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 246-97 chr12 65197187 65197422 + 2 NA intron (NM_001167614, intron 1 of 12) intron (NM_001167614, intron 1 of 12) 27721 NM_001167614 23592 Hs.744150 NM_014319 ENSG00000174106 LEMD3 MAN1 LEM domain containing 3 protein-coding 460-262 chr6 137252816 137253236 + 2 NA Intergenic AluSp|SINE|Alu -33596 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 145-58 chr3 194085066 194085145 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -14135 NR_136180 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 354-308 chr3 157184814 157185100 + 2 NA Intergenic AluJb|SINE|Alu -24197 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 301-220 chr2 118035977 118036164 + 2 NA Intergenic L1P3|LINE|L1 -22000 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 492-262 chr8 100352344 100352762 + 2 NA Intergenic Intergenic -16349 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 352-159 chr14 89118216 89118433 + 2 NA Intergenic MIRb|SINE|MIR 293673 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 282-272 chr21 30360098 30360364 + 2 NA Intergenic Intergenic -11625 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 159-43 chr2 97678978 97679106 + 2 NA intron (NR_038386, intron 5 of 9) L1MB4|LINE|L1 9299 NM_001351368 728537 Hs.469369 NM_001351368 ENSG00000228486 C2orf92 LINC01125 chromosome 2 open reading frame 92 protein-coding 424-226 chr5 95625934 95626329 + 2 NA Intergenic MIRc|SINE|MIR 6044 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 177-103 chr3 60768222 60768365 + 2 NA intron (NR_148921, intron 4 of 4) intron (NR_148921, intron 4 of 4) -150423 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 456-129 chr17 77934069 77934471 + 2 NA Intergenic Intergenic -50183 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 203-167 chr4 72670918 72671097 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -101786 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 244-336 chr7 11502881 11503065 + 2 NA intron (NM_015204, intron 6 of 26) L1PA14|LINE|L1 329225 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 343-405 chr4 164943911 164944086 + 2 NA Intergenic Intergenic -12950 NR_160935 152756 Hs.178648 NM_153027 ENSG00000250486 FAM218A C4orf39 family with sequence similarity 218 member A ncRNA 437-180 chr3 170196857 170197137 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -15264 NM_001308116 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 324-150 chr14 30056076 30056319 + 2 NA Intergenic L1ME3G|LINE|L1 -128350 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 564-188 chr7 50030649 50031041 + 2 NA intron (NM_001159878, intron 5 of 7) intron (NM_001159878, intron 5 of 7) 62401 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 322-89 chr11 49061336 49061532 + 2 NA Intergenic Intergenic -2322 NM_001206631 646754 Hs.740240 NM_001206631 ENSG00000214891 TRIM64C - tripartite motif containing 64C protein-coding 264-449 chrX 30039784 30039994 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -175674 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 196-263 chr8 136190048 136190205 + 2 NA Intergenic Intergenic -340672 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 295-166 chr16 54870333 54870598 + 2 NA Intergenic Intergenic -22232 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 425-63 chr11 131032926 131033222 + 2 NA Intergenic Intergenic -116587 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 306-406 chr5 109588182 109588397 + 2 NA Intergenic Intergenic -101077 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 612-81 chr21 19475328 19475758 + 2 NA Intergenic Intergenic 424212 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 308-429 chr6 93355938 93356192 + 2 NA intron (NM_004440, intron 5 of 16) intron (NM_004440, intron 5 of 16) 63494 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 228-117 chr16 4252176 4252327 + 2 NA intron (NR_039999, intron 1 of 2) L1MD2|LINE|L1 1538 NR_039999 100507501 Hs.632979 NR_039999 LINC01569 - long intergenic non-protein coding RNA 1569 ncRNA 724-96 chr7 126114943 126115581 + 2 NA Intergenic Intergenic -850971 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 284-211 chr2 136654931 136655207 + 2 NA Intergenic Intergenic -110476 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 587-117 chr4 43043997 43044429 + 2 NA Intergenic Intergenic 150947 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 307-135 chr14 48175155 48175341 + 2 NA Intergenic L1M4|LINE|L1 -380234 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 264-172 chr18 4669402 4669649 + 2 NA Intergenic L1PA15|LINE|L1 -214218 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 237-225 chr3 529560 529742 + 2 NA Intergenic Intergenic -62454 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 203-246 chr9 30466426 30466624 + 2 NA Intergenic Intergenic -58071 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 321-523 chr7 42073363 42073661 + 2 NA intron (NM_000168, intron 4 of 14) intron (NM_000168, intron 4 of 14) 163697 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 207-242 chr5 64054598 64054782 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -92398 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 278-371 chr6 65687257 65687429 + 2 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 19882 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 631-105 chr5 114615017 114615606 + 2 NA intron (NR_130785, intron 3 of 12) L1PA13|LINE|L1 39270 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 196-243 chr8 20314459 20314598 + 2 NA Intergenic Intergenic -10565 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 292-419 chr7 127405704 127405880 + 2 NA Intergenic AluJr4|SINE|Alu -13084 NM_176814 168850 Hs.159006 NM_176814 ENSG00000048405 ZNF800 - zinc finger protein 800 protein-coding 239-263 chr3 170609015 170609231 + 2 NA intron (NR_135556, intron 2 of 5) L1M5|LINE|L1 -23048 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 417-215 chr5 41564409 41564760 + 2 NA Intergenic L1PA3|LINE|L1 -53983 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 507-246 chr8 89128440 89128827 + 2 NA Intergenic Intergenic 629078 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 366-321 chr4 96916846 96917078 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -449964 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 369-348 chr6 3206914 3207259 + 2 NA Intergenic Intergenic -11319 NR_038296 100507194 Hs.678053 NR_038295 ENSG00000230269 LINC02525 - long intergenic non-protein coding RNA 2525 ncRNA 198-103 chr18 64183364 64183533 + 2 NA intron (NR_033881, intron 2 of 9) intron (NR_033881, intron 2 of 9) -34422 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 213-175 chr3 41623848 41623958 + 2 NA intron (NR_136342, intron 28 of 34) L1MA7|LINE|L1 338200 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 342-45 chr1 216168782 216168985 + 2 NA intron (NM_206933, intron 21 of 71) LTR8|LTR|ERV1 96418 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 324-99 chr11 87711679 87711880 + 2 NA Intergenic Intergenic 7632 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 384-150 chr19 16626233 16626459 + 2 NA intron (NM_004831, intron 1 of 2) intron (NM_004831, intron 1 of 2) 1858 NM_004831 9441 Hs.715040 NM_004831 ENSG00000105085 MED26 CRSP7|CRSP70 mediator complex subunit 26 protein-coding 325-502 chr7 50519777 50520071 + 2 NA intron (NM_001242889, intron 4 of 12) L1MC2|LINE|L1 -11835 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 264-47 chr10 58531664 58531857 + 2 NA intron (NM_001080512, intron 1 of 20) L1M4c|LINE|L1 18888 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 301-265 chr22 26578022 26578288 + 2 NA intron (NM_001362923, intron 1 of 7) AluSx|SINE|Alu 11977 NM_001362923 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 258-212 chr2 200794505 200794701 + 2 NA non-coding (NR_135011, exon 32 of 32) non-coding (NR_135011, exon 32 of 32) -16943 NM_014670 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 562-198 chr7 11635103 11635580 + 2 NA intron (NM_015204, intron 2 of 26) L4_A_Mam|LINE|RTE-X 196857 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 326-102 chr11 73023561 73023793 + 2 NA intron (NM_014824, intron 3 of 19) L1MC3|LINE|L1 118641 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 421-248 chr5 131883086 131883425 + 2 NA intron (NM_001303622, intron 8 of 12) L2|LINE|L2 62408 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 249-454 chr9 117424368 117424519 + 2 NA Intergenic MIRb|SINE|MIR -9386 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 499-239 chr7 24421616 24422051 + 2 NA Intergenic Intergenic 137643 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 231-291 chr5 87494795 87494981 + 2 NA Intergenic Intergenic -81855 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 386-130 chr17 61830434 61830697 + 2 NA intron (NM_032043, intron 6 of 19) L1MEc|LINE|L1 32994 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 258-90 chr12 52384422 52384668 + 2 NA intron (NM_033045, intron 1 of 8) intron (NM_033045, intron 1 of 8) 1107 NM_033045 3890 Hs.272336 NM_033045 ENSG00000161849 KRT84 HB4|KRTHB4 keratin 84 protein-coding 432-242 chr6 38074639 38074989 + 2 NA intron (NM_021943, intron 3 of 5) Tigger1|DNA|TcMar-Tigger 255087 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 515-113 chr2 68532182 68532535 + 2 NA intron (NM_173545, intron 6 of 9) intron (NM_173545, intron 6 of 9) 64773 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 525-273 chr8 138749827 138750268 + 2 NA intron (NM_152888, intron 22 of 64) THE1B|LTR|ERVL-MaLR 163994 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 317-367 chr4 179266116 179266400 + 2 NA Intergenic Intergenic -1358322 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 347-15 chr1 94421668 94421983 + 2 NA intron (NM_002858, intron 1 of 22) intron (NM_002858, intron 1 of 22) 3436 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 359-291 chr20 52687756 52687968 + 2 NA Intergenic MIRb|SINE|MIR 67024 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 295-68 chr11 33915467 33915651 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -23483 NM_005574 4005 Hs.34560 NM_005574 ENSG00000135363 LMO2 LMO-2|RBTN2|RBTNL1|RHOM2|TTG2 LIM domain only 2 protein-coding 398-371 chr8 136874337 136874663 + 2 NA intron (NR_147196, intron 4 of 5) ERVL-B4-int|LTR|ERVL 343702 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 417-239 chr6 62717418 62717728 + 2 NA Intergenic Intergenic -431346 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 531-124 chr2 181812308 181812688 + 2 NA Intergenic Intergenic -79232 NM_001287505 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 364-214 chr2 105916949 105917154 + 2 NA Intergenic Intergenic 65204 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 254-132 chr15 71069661 71069863 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -71687 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 397-72 chr13 65773102 65773465 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -92764 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 306-458 chr7 20695012 20695241 + 2 NA intron (NM_178559, intron 7 of 18) L1ME1|LINE|L1 47796 NM_001163993 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 333-97 chr11 92061613 92061779 + 2 NA Intergenic Intergenic -163338 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 357-169 chr18 34289231 34289525 + 2 NA Intergenic Intergenic -65827 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 1037-5 chr16 46387027 46387613 + 2 NA Intergenic Intergenic 181777 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 312-540 chr9 21164747 21164951 + 2 NA TTS (NM_002175) TTS (NM_002175) 1811 NM_002175 3452 Hs.113211 NM_002175 ENSG00000137080 IFNA21 IFN-alphaI|LeIF F|leIF-F interferon alpha 21 protein-coding 336-56 chr10 13555007 13555305 + 2 NA Intergenic L1MC4|LINE|L1 -26142 NM_001369863 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 410-172 chr20 63509936 63510199 + 2 NA Intergenic L1MB7|LINE|L1 -10674 NR_148427 79144 Hs.79625 NM_024299 ENSG00000125534 PPDPF C20orf149|dJ697K14.9|exdpf pancreatic progenitor cell differentiation and proliferation factor protein-coding 309-103 chr12 39000976 39001257 + 2 NA Intergenic L1M5|LINE|L1 -95525 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 325-405 chr4 102778351 102778654 + 2 NA intron (NR_125932, intron 2 of 4) intron (NR_125932, intron 2 of 4) 1465 NR_125932 102723704 Hs.638374 NR_125932 LOC102723704 - uncharacterized LOC102723704 ncRNA 592-7 chr1 171299627 171299996 + 2 NA Intergenic L1M2|LINE|L1 -14372 NM_002022 2329 Hs.386502 NM_002022 ENSG00000076258 FMO4 FMO2 flavin containing dimethylaniline monoxygenase 4 protein-coding 512-242 chr6 137713254 137713742 + 2 NA Intergenic Intergenic 25539 NR_121618 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 321-389 chr3 144645523 144645717 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR 672539 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 420-236 chr5 83642289 83642685 + 2 NA intron (NM_001884, intron 4 of 4) intron (NM_001884, intron 4 of 4) 78368 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 220-232 chr3 83612766 83612934 + 2 NA Intergenic Intergenic 1256725 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 333-356 chr3 94337930 94338224 + 2 NA Intergenic L2a|LINE|L2 275016 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 245-93 chr12 39485845 39486005 + 2 NA Intergenic Intergenic -42805 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 220-300 chr5 120829206 120829410 + 2 NA Intergenic L1ME2|LINE|L1 297844 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 377-427 chr9 74187353 74187686 + 2 NA Intergenic Intergenic -184012 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 445-287 chr9 116917663 116917916 + 2 NA intron (NM_014010, intron 9 of 21) L2a|LINE|L2 230484 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 359-380 chr5 3290690 3290944 + 2 NA Intergenic Intergenic 112982 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 288-41 chr10 15943216 15943404 + 2 NA Intergenic Intergenic -82777 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 240-447 chrX 75669742 75669915 + 2 NA Intergenic L1MA4|LINE|L1 73251 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 419-150 chr2 137541093 137541440 + 2 NA intron (NM_001316349, intron 15 of 27) L1MB7|LINE|L1 386666 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 238-16 chr1 153426914 153427109 + 2 NA Intergenic Intergenic -4428 NM_001319198 6279 Hs.416073 NM_002964 ENSG00000143546 S100A8 60B8AG|CAGA|CFAG|CGLA|CP-10|L1Ag|MA387|MIF|MRP8|NIF|P8 S100 calcium binding protein A8 protein-coding 477-261 chr7 71742730 71743052 + 2 NA Intergenic L1PA16|LINE|L1 -435121 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 524-224 chr6 110625910 110626395 + 2 NA intron (NM_001300963, intron 9 of 13) intron (NM_001300963, intron 9 of 13) -149539 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 370-309 chr3 68308426 68308704 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -192072 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 352-528 chr8 81579911 81580139 + 2 NA Intergenic Intergenic -48635 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 478-272 chr7 64885067 64885542 + 2 NA Intergenic MIRc|SINE|MIR -17938 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 415-57 chr12 27861262 27861579 + 2 NA Intergenic Intergenic 81187 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 299-293 chr3 114200471 114200701 + 2 NA Intergenic AluSp|SINE|Alu -1179 NM_001282563 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 285-430 chr8 124788274 124788502 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -33597 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 634-159 chr9 22835534 22835964 + 2 NA Intergenic L1M1|LINE|L1 189549 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 394-28 chr1 238670058 238670445 + 2 NA Intergenic Intergenic -184234 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 194-20 chr10 29546134 29546292 + 2 NA intron (NM_001323599, intron 8 of 38) intron (NM_001323599, intron 8 of 38) -1116 NR_030335 693189 NR_030335 ENSG00000207612 MIR604 MIRN604|hsa-mir-604 microRNA 604 ncRNA 390-96 chr14 59002370 59002660 + 2 NA intron (NR_110547, intron 4 of 5) AluY|SINE|Alu 174227 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 206-251 chr7 41243204 41243374 + 2 NA Intergenic L1ME3Cz|LINE|L1 141685 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 380-123 chr14 58805779 58806103 + 2 NA Intergenic Intergenic -22347 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 349-493 chr8 37993447 37993738 + 2 NA Intergenic Intergenic -26993 NM_000025 155 Hs.2549 NM_000025 ENSG00000188778 ADRB3 BETA3AR adrenoceptor beta 3 protein-coding 169-96 chr5 26804030 26804151 + 2 NA Intergenic Intergenic 234496 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 582-46 chr15 71117859 71118308 + 2 NA Intergenic Intergenic -23366 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 625-77 chr4 186121228 186121819 + 2 NA intron (NM_001367768, intron 1 of 13) intron (NM_001367768, intron 1 of 13) 16819 NM_001367768 25854 Hs.744961 NM_015398 ENSG00000109794 FAM149A MST119|MSTP119 family with sequence similarity 149 member A protein-coding 411-201 chr4 35389951 35390229 + 2 NA Intergenic Intergenic 853849 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 251-219 chr22 23753256 23753412 + 2 NA intron (NM_013378, intron 1 of 1) intron (NM_013378, intron 1 of 1) 1091 NM_013378 29802 Hs.136713 NM_013378 ENSG00000128218 VPREB3 8HS20|N27C7-2 V-set pre-B cell surrogate light chain 3 protein-coding 503-39 chr10 83600866 83601292 + 2 NA Intergenic Intergenic 76010 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 445-291 chrX 76343053 76343324 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -84522 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 301-278 chr3 69948214 69948510 + 2 NA intron (NM_198178, intron 4 of 8) intron (NM_198178, intron 4 of 8) 11762 NM_000248 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 234-325 chr5 164908561 164908743 + 2 NA Intergenic Intergenic 438373 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 307-531 chrX 63792189 63792383 + 2 NA Intergenic L2a|LINE|L2 -6199 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 446-260 chr6 4147557 4147924 + 2 NA intron (NR_103764, intron 2 of 3) L1MB3|LINE|L1 11668 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 595-176 chrX 51236931 51237442 + 2 NA Intergenic L1M2|LINE|L1 -65765 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 257-274 chr3 112550087 112550275 + 2 NA intron (NM_001278712, intron 4 of 10) intron (NM_001278712, intron 4 of 10) -11139 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 249-270 chr3 118100480 118100643 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy -409636 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 231-324 chr7 17392907 17393102 + 2 NA intron (NR_110015, intron 1 of 2) intron (NR_110015, intron 1 of 2) 18087 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 303-285 chr3 79465251 79465501 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -42511 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 294-16 chr1 174676227 174676445 + 2 NA intron (NM_001366446, intron 14 of 25) intron (NM_001366446, intron 14 of 25) -24203 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 143-60 chr4 46363687 46363822 + 2 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 25625 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 184-14 chr1 163074098 163074260 + 2 NA intron (NM_001102445, intron 5 of 5) intron (NM_001102445, intron 5 of 5) 2274 NM_001113380 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 392-264 chr5 153722495 153722793 + 2 NA intron (NM_000827, intron 11 of 15) L1ME3A|LINE|L1 176343 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 208-96 chr18 6288675 6288865 + 2 NA intron (NM_001365769, intron 4 of 16) MER65-int|LTR|ERV1 32026 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 196-24 chr10 4566384 4566542 + 2 NA Intergenic Intergenic -89693 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 233-401 chr9 102158857 102159070 + 2 NA Intergenic L3|LINE|CR1 -360674 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 293-270 chr3 104136840 104137115 + 2 NA Intergenic L1M5|LINE|L1 -612861 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 319-21 chr1 114332616 114332915 + 2 NA Intergenic L1M5|LINE|L1 178438 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 363-151 chr15 36241387 36241717 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 314696 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 259-10 chr1 70009669 70009815 + 2 NA intron (NM_001370785, intron 11 of 26) intron (NM_001370785, intron 11 of 26) 90420 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 483-177 chr3 126002705 126003102 + 2 NA Intergenic (TTGAAC)n|Simple_repeat|Simple_repeat 33725 NM_001012337 152015 Hs.663128 NM_001012337 ENSG00000114547 ROPN1B - rhophilin associated tail protein 1B protein-coding 329-10 chr1 86480970 86481226 + 2 NA intron (NM_001285, intron 4 of 13) L1ME4a|LINE|L1 12171 NM_001285 1179 Hs.194659 NM_001285 ENSG00000016490 CLCA1 CACC|CACC1|CLCRG1|CaCC-1|GOB5|hCLCA1|hCaCC-1 chloride channel accessory 1 protein-coding 144-38 chr2 16367410 16367547 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger 298356 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 260-381 chr6 75561478 75561670 + 2 NA Intergenic L1MEf|LINE|L1 -39935 NM_001304792 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 326-136 chr13 62550069 62550311 + 2 NA Intergenic Intergenic 226533 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 335-322 chr22 19649891 19650149 + 2 NA Intergenic L1M4|LINE|L1 -64483 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 368-62 chr10 89292437 89292778 + 2 NA Intergenic MIR|SINE|MIR -9439 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 301-456 chr8 92127287 92127493 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -24005 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 612-78 chr20 42334347 42334774 + 2 NA intron (NM_133170, intron 11 of 31) L1ME4c|LINE|L1 -350923 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 149-45 chr18 55598288 55598371 + 2 NA intron (NM_001243226, intron 2 of 20) intron (NM_001243226, intron 2 of 20) -8518 NM_001243228 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 626-6 chr1 76245417 76245777 + 2 NA intron (NM_001349108, intron 1 of 3) L1PA8|LINE|L1 170851 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 340-581 chrX 55666561 55666766 + 2 NA Intergenic L1PREC2|LINE|L1 43263 NM_198451 139628 Hs.364260 NM_198451 ENSG00000189299 FOXR2 FOXN6 forkhead box R2 protein-coding 164-111 chr8 98976689 98976807 + 2 NA Intergenic Intergenic 32306 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 238-63 chr11 9966867 9967031 + 2 NA intron (NM_030962, intron 14 of 39) L1MB7|LINE|L1 127807 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 240-167 chr16 56069212 56069374 + 2 NA Intergenic Intergenic -113262 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 348-564 chr9 132438280 132438520 + 2 NA intron (NM_001282957, intron 1 of 5) MER63D|DNA|hAT-Blackjack 28189 NM_001282957 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 310-174 chr16 62551846 62552006 + 2 NA Intergenic L1M1|LINE|L1 -515488 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 212-291 chr7 7128473 7128615 + 2 NA Intergenic Intergenic -31758 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 249-145 chr16 78210202 78210373 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 110633 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 965 chr1 117797571 117798355 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 131658 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 303-384 chr5 163015561 163015742 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -421920 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 291-126 chr14 62906942 62907148 + 2 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 138413 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 535-103 chr17 13048688 13049041 + 2 NA Intergenic Intergenic -30800 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 167-4 chr1 37067839 37067983 + 2 NA Intergenic Intergenic -33396 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 330-132 chr12 126704097 126704323 + 2 NA Intergenic LTR106_Mam|LTR|LTR -13892 NR_110034 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 554-47 chr11 82803860 82804162 + 2 NA Intergenic AluSq2|SINE|Alu -70147 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 135-59 chr6 55776421 55776536 + 2 NA intron (NM_001329754, intron 3 of 5) intron (NM_001329754, intron 3 of 5) 99112 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 533-86 chr18 30519877 30520232 + 2 NA Intergenic Intergenic 221144 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 375-229 chr2 221783352 221783667 + 2 NA Intergenic Intergenic -209307 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 469-148 chr2 222365042 222365499 + 2 NA Intergenic Intergenic 44609 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 550-15 chr1 217999090 217999433 + 2 NA Intergenic L2|LINE|L2 -44244 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 319-583 chrX 63003420 63003653 + 2 NA Intergenic L1M2|LINE|L1 347796 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 416-280 chr5 118211408 118211666 + 2 NA intron (NR_104997, intron 2 of 2) AluSx|SINE|Alu -71037 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 305-252 chr2 52167312 52167579 + 2 NA intron (NR_135237, intron 7 of 10) Kanga1a|DNA|TcMar-Tc2 -203203 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 485-125 chr2 22345572 22345954 + 2 NA Intergenic Intergenic -190716 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 356-91 chr11 98507297 98507481 + 2 NA Intergenic L1MA6|LINE|L1 -513560 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 314-42 chr1 210727390 210727599 + 2 NA intron (NM_002238, intron 10 of 10) FLAM_C|SINE|Alu 398128 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 255-55 chr11 22103936 22104126 + 2 NA Intergenic MIRb|SINE|MIR -89054 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 191-79 chr17 60786742 60786867 + 2 NA intron (NM_001330413, intron 6 of 25) intron (NM_001330413, intron 6 of 25) 108953 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 544-125 chr2 137318150 137318567 + 2 NA intron (NM_001316349, intron 12 of 27) MLT1K|LTR|ERVL-MaLR 552813 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 323-232 chr2 25420875 25421115 + 2 NA intron (NM_033147, intron 15 of 19) intron (NM_033147, intron 15 of 19) -78405 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 310-18 chr1 151887800 151887972 + 2 NA intron (NM_053055, intron 4 of 5) LTR16A2|LTR|ERVL 21625 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 259-362 chr7 3399612 3399759 + 2 NA intron (NM_152744, intron 1 of 44) L1M4|LINE|L1 98433 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 156-74 chr4 76475975 76476078 + 2 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 40797 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 367-240 chr2 226504695 226504999 + 2 NA Intergenic L1MEd|LINE|L1 153946 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 308-219 chr2 33940593 33940803 + 2 NA intron (NR_126403, intron 3 of 5) AluSx1|SINE|Alu -126528 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 860-13 chr14 78523926 78524505 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 120496 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 252-229 chr20 31903771 31903964 + 2 NA intron (NM_001367620, intron 4 of 11) L1MC4a|LINE|L1 24050 NR_160277 164395 Hs.712915 NM_001008409 ENSG00000131044 TTLL9 C20orf125 tubulin tyrosine ligase like 9 protein-coding 217-369 chr8 110427294 110427442 + 2 NA Intergenic Intergenic -451597 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 760-52 chr4 38293622 38294029 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -73089 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 223-6 chr1 67863508 67863688 + 2 NA intron (NR_040077, intron 1 of 9) MER103C|DNA|hAT-Charlie -30131 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 241-104 chr14 45576925 45577157 + 2 NA Intergenic L1MA3|LINE|L1 138561 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 866-47 chr7 67590883 67591507 + 2 NA Intergenic L1PA13|LINE|L1 255219 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 335-297 chr20 42365027 42365328 + 2 NA intron (NM_133170, intron 9 of 31) MER33|DNA|hAT-Charlie -320306 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 334-207 chr17 34841687 34841949 + 2 NA Intergenic Intergenic 119642 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 431-87 chr14 96998900 96999188 + 2 NA Intergenic Zaphod3|DNA|hAT-Tip100 55465 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 289-53 chr10 43549394 43549604 + 2 NA Intergenic L1MD1|LINE|L1 18960 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 339-300 chr2 220139198 220139413 + 2 NA Intergenic L2b|LINE|L2 -232740 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 218-64 chr12 16616825 16617015 + 2 NA Intergenic Intergenic -8706 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 741-55 chr5 86595502 86595985 + 2 NA Intergenic Intergenic -22198 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 334-416 chr5 32957767 32958061 + 2 NA intron (NR_033832, intron 3 of 5) intron (NR_033832, intron 3 of 5) 10471 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 201-76 chr14 49107100 49107201 + 2 NA Intergenic MER77|LTR|ERVL 479230 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 510-115 chr18 44278425 44278718 + 2 NA Intergenic Intergenic 253126 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 177-161 chr8 112162087 112162201 + 2 NA Intergenic Intergenic -481349 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 366-363 chr5 178932599 178932810 + 2 NA 3' UTR (NM_030613, exon 5 of 5) 3' UTR (NM_030613, exon 5 of 5) -8494 NM_001323306 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 327-81 chr11 30972287 30972493 + 2 NA intron (NM_001367979, intron 20 of 38) L1MA4A|LINE|L1 20296 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 334-386 chr4 100752091 100752270 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -77067 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 232-125 chr16 78068827 78068988 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -30747 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 341-116 chr12 53864122 53864342 + 2 NA Intergenic Intergenic -74599 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 344-169 chr16 9792528 9792786 + 2 NA intron (NM_001134408, intron 11 of 13) intron (NM_001134408, intron 11 of 13) -337152 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 347-259 chr2 225416970 225417144 + 2 NA intron (NM_001371273, intron 3 of 7) intron (NM_001371273, intron 3 of 7) 16171 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 204-82 chr14 27116409 27116533 + 2 NA Intergenic L1M5|LINE|L1 207829 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 355-109 chr11 111060196 111060443 + 2 NA Intergenic Intergenic 36999 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 321-102 chr11 79829637 79829860 + 2 NA Intergenic Intergenic -388718 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 294-163 chr17 54579286 54579459 + 2 NA Intergenic L1M1|LINE|L1 -321319 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 326-430 chr5 141485921 141486217 + 2 NA exon (NM_018928, exon 1 of 4) exon (NM_018928, exon 1 of 4) 895 NM_018928 56098 Hs.368160 NM_018928 ENSG00000242419 PCDHGC4 PCDH-GAMMA-C4 protocadherin gamma subfamily C, 4 protein-coding 254-44 chr10 85603792 85604001 + 2 NA intron (NM_017551, intron 15 of 15) intron (NM_017551, intron 15 of 15) 26165 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 399-125 chr18 38322795 38323055 + 2 NA Intergenic L1MC4|LINE|L1 665790 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 354-52 chr10 60906151 60906456 + 2 NA intron (NM_001350906, intron 5 of 12) intron (NM_001350906, intron 5 of 12) 37882 NM_001350904 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 266-386 chr7 7099685 7099874 + 2 NA Intergenic Intergenic -2993 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 365-331 chr5 115738381 115738637 + 2 NA Intergenic MER57A-int|LTR|ERV1 -65857 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 469-117 chr18 64815340 64815642 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -555436 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 283-219 chr2 16738608 16738791 + 2 NA Intergenic Intergenic -72865 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 292-318 chr4 63924309 63924577 + 2 NA Intergenic MIRb|SINE|MIR 485007 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 364-211 chr2 82610171 82610504 + 2 NA Intergenic L1M4|LINE|L1 -246466 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 426-31 chr10 83006154 83006494 + 2 NA Intergenic Intergenic 670765 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 356-470 chr8 52814240 52814454 + 2 NA Intergenic Intergenic -99881 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 153-25 chr12 40604028 40604128 + 2 NA Intergenic Intergenic -88361 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 493-87 chr14 71311623 71311967 + 2 NA Intergenic AluSx|SINE|Alu -8681 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 489-78 chr14 66792133 66792523 + 2 NA intron (NM_001024218, intron 3 of 21) AluJr|SINE|Alu 284921 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 271-437 chr8 82860604 82860851 + 2 NA Intergenic Intergenic -51377 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 294-342 chr4 90806250 90806507 + 2 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 571347 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 435-40 chr10 87982768 87983093 + 2 NA Intergenic Intergenic 119305 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 317-469 chr7 143916746 143917057 + 2 NA Intergenic Intergenic -14725 NM_001206938 9747 Hs.735149 NM_014719 ENSG00000198420 TCAF1 FAM115A TRPM8 channel associated factor 1 protein-coding 212-238 chr4 87768815 87768985 + 2 NA Intergenic Intergenic -30654 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 184-90 chr2 71371610 71371732 + 2 NA intron (NM_001252613, intron 8 of 27) L1MA2|LINE|L1 39889 NM_014497 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 286-85 chr12 18634954 18635160 + 2 NA intron (NM_001288774, intron 31 of 32) ERVL-B4-int|LTR|ERVL 102452 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 324-91 chr11 56078303 56078513 + 2 NA Intergenic L1PA10|LINE|L1 -14900 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 328-99 chr12 16839191 16839464 + 2 NA Intergenic Intergenic -149420 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 412-61 chr11 135066959 135067307 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie 81781 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 317-503 chr8 127594566 127594814 + 2 NA Intergenic Intergenic -112551 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 443-287 chr7 115208793 115209137 + 2 NA intron (NR_126407, intron 1 of 4) intron (NR_126407, intron 1 of 4) 22390 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 615-130 chr7 109856037 109856498 + 2 NA Intergenic Intergenic 103946 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 333-134 chr13 70235893 70236216 + 2 NA Intergenic Intergenic -127561 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 192-90 chr18 64853080 64853196 + 2 NA Intergenic L1MC3|LINE|L1 -593083 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 678-107 chr8 120664620 120665089 + 2 NA intron (NM_021021, intron 2 of 6) L1ME1|LINE|L1 -96399 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 354-182 chr18 12872710 12873034 + 2 NA intron (NM_080423, intron 1 of 8) intron (NM_080423, intron 1 of 8) 11365 NM_002828 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 217-118 chr14 63058451 63058598 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -13066 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 372-439 chr6 103318659 103318849 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 1540792 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 314-448 chr5 18215073 18215330 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 407927 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 180-39 chr13 34836302 34836473 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -105900 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 248-192 chr2 88749585 88749831 + 2 NA intron (NM_144563, intron 8 of 8) L2b|LINE|L2 -16194 NR_015424 645784 Hs.105323 NR_015424 ENSG00000230006 ANKRD36BP2 - ankyrin repeat domain 36B pseudogene 2 pseudo 244-53 chr11 50484004 50484195 + 2 NA Intergenic ALR/Alpha|Satellite|centr 74952 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 666-114 chr8 116692396 116692743 + 2 NA intron (NM_003756, intron 2 of 7) intron (NM_003756, intron 2 of 7) 40469 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 250-177 chr18 40950974 40951184 + 2 NA Intergenic L2b|LINE|L2 569598 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 283-193 chr18 38216478 38216731 + 2 NA Intergenic L1MB7|LINE|L1 559469 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 330-219 chr18 5138359 5138680 + 2 NA Intergenic Intergenic 57337 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 291-494 chr9 82279267 82279419 + 2 NA Intergenic L1MC2|LINE|L1 290571 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 326-422 chr5 106925028 106925344 + 2 NA intron (NR_104671, intron 2 of 3) LTR49|LTR|ERV1 85828 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 256-214 chr2 129817808 129818038 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 59568 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 174-108 chr5 27964039 27964161 + 2 NA Intergenic L1PREC2|LINE|L1 323565 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 670-45 chr17 41447804 41448253 + 2 NA Intergenic Intergenic -6684 NM_006771 8687 Hs.248188 NM_006771 ENSG00000171360 KRT38 HA8|KRTHA8|hHa8 keratin 38 protein-coding 334-395 chr4 116965797 116966049 + 2 NA Intergenic Intergenic 119653 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 414-86 chr14 62768640 62768988 + 2 NA intron (NM_172375, intron 9 of 9) MamGypsy2-I|LTR|Gypsy 276644 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 508-6 chr1 66367941 66368301 + 2 NA intron (NM_001037339, intron 8 of 9) A-rich|Low_complexity|Low_complexity 13586 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 348-429 chr5 136340970 136341250 + 2 NA intron (NM_020389, intron 2 of 11) L1ME4b|LINE|L1 24366 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 418-273 chr8 9842568 9842822 + 2 NA Intergenic L1PA7|LINE|L1 60634 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 238-227 chr3 7484209 7484395 + 2 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) 50982 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 303-493 chr9 76691700 76691942 + 2 NA intron (NM_001308049, intron 1 of 11) intron (NM_001308049, intron 1 of 11) 594 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 274-345 chr7 10339551 10339708 + 2 NA Intergenic MIRb|SINE|MIR -363047 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 404-157 chr2 30548768 30549033 + 2 NA intron (NM_182551, intron 4 of 6) MER4E|LTR|ERV1 101654 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 381-136 chr17 34913122 34913351 + 2 NA Intergenic Intergenic 48224 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 287-47 chr10 28199314 28199539 + 2 NA intron (NR_134518, intron 2 of 16) intron (NR_134518, intron 2 of 16) 82697 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 433-12 chr1 195337579 195337817 + 2 NA Intergenic Intergenic 751017 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 282-277 chr22 27349040 27349260 + 2 NA Intergenic MER50B|LTR|ERV1 38499 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 311-424 chr5 144721876 144722087 + 2 NA Intergenic Intergenic 516590 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 226-130 chr17 72248610 72248810 + 2 NA Intergenic L2c|LINE|L2 -94101 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 338-538 chr8 74565358 74565607 + 2 NA Intergenic L2c|LINE|L2 -16873 NR_049871 100847091 NR_049871 ENSG00000283505 MIR5681B - microRNA 5681b ncRNA 194-195 chr6 164268127 164268252 + 2 NA Intergenic L1MC2|LINE|L1 553874 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 219-96 chr14 46944754 46944878 + 2 NA intron (NM_001113498, intron 9 of 16) L1ME2|LINE|L1 -293035 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 328-74 chr11 9858864 9859074 + 2 NA intron (NM_030962, intron 17 of 39) intron (NM_030962, intron 17 of 39) 19827 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 238-345 chr7 3275967 3276133 + 2 NA Intergenic Intergenic -25202 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 558-15 chr1 225005736 225006136 + 2 NA intron (NM_001349911, intron 9 of 10) intron (NM_001349911, intron 9 of 10) 76261 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 355-471 chr7 80090350 80090569 + 2 NA Intergenic L2|LINE|L2 -44372 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 202-233 chr7 7808546 7808701 + 2 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -90016 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 394-266 chr5 45846000 45846343 + 2 NA Intergenic Intergenic -149791 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 234-225 chr22 37160632 37160836 + 2 NA intron (NM_001346222, intron 1 of 9) AluSz|SINE|Alu -10818 NM_000878 3560 Hs.474787 NM_000878 ENSG00000100385 IL2RB CD122|IL15RB|P70-75 interleukin 2 receptor subunit beta protein-coding 212-228 chr3 191150218 191150417 + 2 NA Intergenic Intergenic -48924 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 275-295 chr5 111792176 111792330 + 2 NA intron (NM_001142474, intron 2 of 3) intron (NM_001142474, intron 2 of 3) -34035 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 354-500 chr9 99462963 99463274 + 2 NA Intergenic LTR89|LTR|ERVL? -87861 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 256-448 chr9 26763611 26763807 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 129093 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 253-287 chr4 30602577 30602744 + 2 NA Intergenic Intergenic -117709 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 414-146 chr2 31554266 31554531 + 2 NA intron (NM_000348, intron 1 of 4) intron (NM_000348, intron 1 of 4) 26540 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 206-88 chr16 50985068 50985259 + 2 NA intron (NR_039672, intron 2 of 6) L2c|LINE|L2 -32595 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 181-107 chr4 60729660 60729802 + 2 NA Intergenic Intergenic -192888 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 223-51 chr11 54747636 54747792 + 2 NA Intergenic ALR/Alpha|Satellite|centr 40882 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 341-129 chr12 117914501 117914732 + 2 NA intron (NM_173598, intron 1 of 19) AluJr|SINE|Alu 54374 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 442-133 chr2 82538808 82539185 + 2 NA Intergenic Intergenic -317807 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 339-205 chr16 83098022 83098200 + 2 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -107813 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 261-108 chr14 66832182 66832374 + 2 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) 324871 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 336-126 chr12 33317875 33318057 + 2 NA Intergenic LTR24C|LTR|ERV1 121853 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 289-323 chr3 170653119 170653287 + 2 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -67128 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 320-247 chr2 5153988 5154221 + 2 NA Intergenic Intergenic -497882 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 367-71 chr11 34725517 34725845 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 93115 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 707-17 chr12 114305773 114306281 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -64257 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 431-123 chr2 16698464 16698750 + 2 NA Intergenic L1P5|LINE|L1 -32773 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 290-45 chr10 33992481 33992662 + 2 NA Intergenic Intergenic -219891 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 452-271 chr8 90190502 90190857 + 2 NA Intergenic Intergenic -30809 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 245-82 chr11 92682051 92682201 + 2 NA intron (NM_001008781, intron 2 of 24) MIR|SINE|MIR 233502 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 325-511 chr7 86152874 86153049 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -490948 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 523-124 chr2 30352715 30353079 + 2 NA Intergenic Intergenic 6251 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 276-401 chr6 54986682 54986895 + 2 NA Intergenic L1PA14|LINE|L1 -119672 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 492-224 chr5 169858312 169858680 + 2 NA intron (NR_156756, intron 27 of 52) L2|LINE|L2 121999 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 462-228 chr5 94390717 94391164 + 2 NA intron (NM_001145678, intron 18 of 20) intron (NM_001145678, intron 18 of 20) 227664 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 238-212 chr20 58727815 58727992 + 2 NA Intergenic L1MEf|LINE|L1 35103 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 324-576 chr9 132704056 132704240 + 2 NA Intergenic AluSx1|SINE|Alu 33684 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 339-598 chr8 139655867 139656057 + 2 NA intron (NR_104210, intron 1 of 3) MIRb|SINE|MIR 47161 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 225-180 chr20 42235958 42236099 + 2 NA intron (NM_133170, intron 16 of 31) intron (NM_133170, intron 16 of 31) -449455 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 328-346 chr3 50909885 50910098 + 2 NA intron (NM_004947, intron 4 of 52) L1PA11|LINE|L1 234911 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 389-31 chr10 44027031 44027236 + 2 NA Intergenic L1MEd|LINE|L1 114731 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 729-15 chr11 26169968 26170662 + 2 NA Intergenic AluSx|SINE|Alu -18808 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 198-105 chr19 12132958 12133086 + 2 NA exon (NM_001203250, exon 4 of 4) exon (NM_001203250, exon 4 of 4) 7328 NM_021143 7568 Hs.512823 NM_021143 ENSG00000132010 ZNF20 KOX13 zinc finger protein 20 protein-coding 263-77 chr12 8650704 8650922 + 2 NA intron (NM_001297711, intron 5 of 7) intron (NM_001297711, intron 5 of 7) 12013 NR_123733 8076 Hs.512842 NM_003480 ENSG00000197614 MFAP5 AAT9|MAGP-2|MAGP2|MFAP-5|MP25 microfibril associated protein 5 protein-coding 298-283 chr22_KI270736v1_random 111869 112063 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 422-242 chr5 103836958 103837350 + 2 NA Intergenic Intergenic -274365 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 165-2 chr1 105229713 105229835 + 2 NA Intergenic L1M4|LINE|L1 389161 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 277-220 chr20 4366391 4366662 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -117239 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 323-396 chr5 18365691 18365965 + 2 NA Intergenic Intergenic 558554 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 216-271 chr5 8107174 8107305 + 2 NA Intergenic Intergenic 238091 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 188-34 chr12 16693249 16693413 + 2 NA Intergenic L1MA6|LINE|L1 -85117 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 354-358 chr5 9140405 9140731 + 2 NA intron (NM_003966, intron 12 of 22) intron (NM_003966, intron 12 of 22) -86673 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 136-32 chr16 22646368 22646477 + 2 NA Intergenic L2a|LINE|L2 100724 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 188-22 chr11 13858068 13858228 + 2 NA intron (NR_149109, intron 3 of 3) intron (NR_149109, intron 3 of 3) 12468 NR_149109 105376561 Hs.512244 NR_149109 ENSG00000254930 LINC02545 - long intergenic non-protein coding RNA 2545 ncRNA 276-198 chr18 7617762 7618003 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 50566 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 346-501 chr8 128157559 128157864 + 2 NA Intergenic Intergenic 7595 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 287-162 chr17 61347665 61347921 + 2 NA intron (NM_001330413, intron 23 of 25) L2c|LINE|L2 19911 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 119-25 chr18 66316160 66316251 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 287885 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 285-374 chr6 156077694 156077969 + 2 NA Intergenic Intergenic 131034 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 255-12 chr1 167615410 167615600 + 2 NA Intergenic L1MB2|LINE|L1 -14688 NM_001322923 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 457-240 chr7 83995210 83995487 + 2 NA intron (NM_006080, intron 12 of 16) intron (NM_006080, intron 12 of 16) 199441 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 297-94 chr12 2380655 2380892 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 110997 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 245-194 chr2 101955918 101956062 + 2 NA Intergenic MLT2B1|LTR|ERVL -27475 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 482-255 chr7 84966472 84966831 + 2 NA Intergenic L1MA8|LINE|L1 155280 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 487-187 chr3 72074701 72075004 + 2 NA intron (NR_104116, intron 2 of 6) AluJb|SINE|Alu 25603 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 278-231 chr2 152433184 152433397 + 2 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 98116 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 359-284 chr20 39260546 39260736 + 2 NA Intergenic L2|LINE|L2 -35893 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 499-151 chr21 22362161 22362594 + 2 NA Intergenic Intergenic 263760 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 140-26 chr14 65256613 65256744 + 2 NA Intergenic Intergenic -34331 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 436-281 chr7 34221065 34221332 + 2 NA Intergenic Intergenic 315659 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 316-27 chr1 167910697 167910938 + 2 NA intron (NM_018417, intron 1 of 32) intron (NM_018417, intron 1 of 32) 3317 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 254-101 chr13 96807382 96807612 + 2 NA intron (NM_153456, intron 1 of 1) MLT1C|LTR|ERVL-MaLR 176675 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 230-4 chr1 40714481 40714699 + 2 NA intron (NM_001142590, intron 3 of 14) intron (NM_001142590, intron 3 of 14) 5224 NM_001308115 4802 Hs.713051 NM_014223 ENSG00000066136 NFYC CBF-C|CBFC|H1TF2A|HAP5|HSM|NF-YC nuclear transcription factor Y subunit gamma protein-coding 308-193 chr18 6156496 6156738 + 2 NA intron (NM_001365769, intron 13 of 16) intron (NM_001365769, intron 13 of 16) -100127 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 533-22 chr10 109441516 109441908 + 2 NA Intergenic LTR50|LTR|ERVL 481534 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 496-121 chr18 61933387 61933747 + 2 NA Intergenic L1MC5|LINE|L1 -40560 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 660-24 chr14 21343007 21343491 + 2 NA intron (NM_020366, intron 21 of 23) intron (NM_020366, intron 21 of 23) 40770 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 323-293 chr20 22200284 22200561 + 2 NA Intergenic L1PA12|LINE|L1 82379 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 629-125 chr8 43663401 43663840 + 2 NA Intergenic ALR/Alpha|Satellite|centr 371178 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 566-130 chr3 114813909 114814266 + 2 NA intron (NM_001348805, intron 4 of 10) intron (NM_001348805, intron 4 of 10) -54980 NM_001164345 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 270-442 chrX 63596588 63596829 + 2 NA Intergenic L1PREC2|LINE|L1 -35613 NR_152609 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 301-497 chrX 124579198 124579358 + 2 NA intron (NM_014253, intron 11 of 30) L2c|LINE|L2 232996 NM_002351 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 273-268 chr21 26744789 26744994 + 2 NA Intergenic L1MB8|LINE|L1 100518 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 410-137 chr2 66961204 66961582 + 2 NA intron (NR_110169, intron 4 of 4) intron (NR_110169, intron 4 of 4) -38903 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 276-31 chr1 192147092 192147282 + 2 NA Intergenic Intergenic -11275 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 193-7 chr1 66386389 66386556 + 2 NA Intergenic L1ME4a|LINE|L1 31937 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 408-39 chr10 33483983 33484356 + 2 NA Intergenic Intergenic -149264 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 531-249 chr8 130353087 130353449 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -56735 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 223-337 chr8 54231485 54231701 + 2 NA Intergenic Intergenic 96352 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 390-248 chr3 106885189 106885478 + 2 NA Intergenic Intergenic 355305 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 254-344 chr6 45981331 45981557 + 2 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 34416 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 357-290 chr3 168597545 168597795 + 2 NA intron (NR_021485, intron 4 of 15) intron (NR_021485, intron 4 of 15) 45816 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 160-120 chr8 87445269 87445380 + 2 NA Intergenic Intergenic 428691 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 398-53 chr11 19039357 19039559 + 2 NA Intergenic L1M3de|LINE|L1 20559 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 360-308 chr3 94892264 94892462 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 -45900 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 353-29 chr1 179155324 179155566 + 2 NA intron (NM_007314, intron 1 of 11) intron (NM_007314, intron 1 of 11) -12369 NM_001168239 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 597-19 chr10 34783724 34784234 + 2 NA intron (NM_001184789, intron 1 of 22) AluJb|SINE|Alu 31317 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 452-244 chr7 22755206 22755527 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -27746 NR_131935 541472 Hs.512234 NR_131935 ENSG00000179428 LOC541472 - uncharacterized LOC541472 ncRNA 355-95 chr11 81329410 81329617 + 2 NA Intergenic Intergenic 561323 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 318-7 chr1 35527454 35527665 + 2 NA intron (NM_024874, intron 2 of 20) L1M2|LINE|L1 29844 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 530-245 chr7 156043502 156043873 + 2 NA Intergenic Intergenic 81055 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 339-40 chr1 213302901 213303170 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 251794 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 327-425 chr5 158633444 158633715 + 2 NA Intergenic Intergenic -223806 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 224-145 chr2 80065025 80065152 + 2 NA intron (NM_001282598, intron 7 of 17) Chap1_Mam|DNA|hAT-Charlie -198505 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 514-100 chr15 70168108 70168404 + 2 NA Intergenic AluSq2|SINE|Alu -70339 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 410-282 chr7 79432238 79432557 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -20560 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 349-322 chr3 6456208 6456443 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 349124 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 336-428 chr4 111126659 111126898 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -266131 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 488-182 chr3 182571434 182571759 + 2 NA Intergenic L3|LINE|CR1 -64472 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 273-75 chr11 38809479 38809693 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 160728 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 372-490 chr8 117371383 117371648 + 2 NA Intergenic L1ME2z|LINE|L1 -149198 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 280-387 chr7 77286715 77286928 + 2 NA exon (NM_020879, exon 16 of 19) exon (NM_020879, exon 16 of 19) -87002 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 353-546 chr8 139900108 139900453 + 2 NA intron (NM_001160372, intron 20 of 22) L2b|LINE|L2 -197157 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 236-240 chr3 144849029 144849228 + 2 NA Intergenic Intergenic 876047 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 336-18 chr1 64378291 64378506 + 2 NA Intergenic L1MA2|LINE|L1 -91731 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 312-198 chr18 34987386 34987640 + 2 NA intron (NM_001143827, intron 1 of 7) intron (NM_001143827, intron 1 of 7) 9145 NM_001143827 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 603-8 chr1 172563706 172564020 + 2 NA intron (NM_014283, intron 6 of 23) MSTA-int|LTR|ERVL-MaLR 30713 NM_014283 51430 Hs.204559 NM_014283 ENSG00000094975 SUCO C1orf9|CH1|OPT|SLP1 SUN domain containing ossification factor protein-coding 311-542 chr9 30164263 30164479 + 2 NA Intergenic Intergenic 244083 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 460-68 chr12 78454765 78455076 + 2 NA Intergenic Intergenic -95174 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 431-54 chr11 41040851 41041213 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 418604 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 324-152 chr14 37959135 37959421 + 2 NA Intergenic Intergenic -57154 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 309-265 chr2 134530675 134530854 + 2 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 188236 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 271-53 chr10 75805297 75805513 + 2 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 22644 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 241-380 chr7 131255520 131255741 + 2 NA intron (NM_001145354, intron 2 of 18) AluSx|SINE|Alu 72149 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 293-422 chr8 21210203 21210426 + 2 NA Intergenic Intergenic -87925 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 450-33 chr10 62793119 62793489 + 2 NA Intergenic L1MC1|LINE|L1 -11416 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 392-37 chr11 31154178 31154477 + 2 NA intron (NM_001367979, intron 9 of 38) L2c|LINE|L2 -161641 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 245-242 chr3 188751062 188751261 + 2 NA intron (NM_001167672, intron 6 of 9) intron (NM_001167672, intron 6 of 9) 62380 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 334-48 chr10 33987712 33987948 + 2 NA Intergenic Intergenic -215150 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 526-151 chr20 22637638 22638048 + 2 NA Intergenic L1M4|LINE|L1 -30326 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 467-300 chr9 88895901 88896247 + 2 NA Intergenic L1ME2|LINE|L1 -94789 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 588-108 chr4 465639 465969 + 2 NA intron (NM_133474, intron 2 of 2) L1M3a|LINE|L1 8405 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 465-178 chr3 105712880 105713169 + 2 NA intron (NR_135808, intron 10 of 19) AluJr|SINE|Alu 154567 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 291-28 chr1 185798235 185798494 + 2 NA intron (NM_031935, intron 1 of 106) L1PA15-16|LINE|L1 63973 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 406-262 chr6 131496387 131496625 + 2 NA Intergenic Intergenic -76720 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 469-26 chr10 41784311 41784588 + 2 NA Intergenic ALR/Alpha|Satellite|centr 583596 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 301-27 chr1 228248445 228248672 + 2 NA intron (NM_052843, intron 13 of 80) L1M5|LINE|L1 -34894 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 385-78 chr13 35336140 35336517 + 2 NA intron (NM_015678, intron 36 of 57) L1MB7|LINE|L1 140361 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 404-110 chr15 27724764 27724994 + 2 NA Intergenic Intergenic 374436 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 203-106 chr2 34526357 34526535 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -151111 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 590-62 chr16 26237797 26238181 + 2 NA Intergenic L1ME4a|LINE|L1 212752 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 492-270 chr8 132895845 132896163 + 2 NA intron (NM_003235, intron 11 of 47) intron (NM_003235, intron 11 of 47) 29046 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 202-2 chr1 47627112 47627300 + 2 NA Intergenic L2c|LINE|L2 -189889 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 341-507 chr7 131751921 131752144 + 2 NA Intergenic L1MC1|LINE|L1 -158188 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 199-167 chr3 139128844 139129018 + 2 NA Intergenic L2b|LINE|L2 24746 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 329-616 chr9 133017157 133017343 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -3180 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 624-110 chr6 70923529 70924090 + 2 NA intron (NM_080742, intron 1 of 3) intron (NM_080742, intron 1 of 3) 33251 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 337-338 chr3 16796405 16796620 + 2 NA Intergenic Intergenic -88443 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 294-307 chr3 111396919 111397150 + 2 NA Intergenic L1MEc|LINE|L1 -145163 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 344-9 chr1 60664291 60664594 + 2 NA intron (NR_110628, intron 4 of 5) intron (NR_110628, intron 4 of 5) -41757 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 172-69 chr2 239606339 239606460 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -156461 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 242-425 chr9 18901627 18901809 + 2 NA intron (NM_001040272, intron 26 of 28) L1ME3A|LINE|L1 131491 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 344-473 chr7 158190132 158190425 + 2 NA intron (NM_130843, intron 5 of 21) intron (NM_130843, intron 5 of 21) 335693 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 444-37 chr11 38994477 38994855 + 2 NA Intergenic Intergenic 345808 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 317-75 chr11 23785137 23785386 + 2 NA Intergenic LTR8A|LTR|ERV1 -366071 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 362-279 chr3 107212077 107212365 + 2 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 28417 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 252-443 chr8 139253666 139253857 + 2 NA Intergenic MER70B|LTR|ERVL -339720 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 385-258 chr3 186308595 186308841 + 2 NA intron (NM_001346, intron 2 of 24) intron (NM_001346, intron 2 of 24) 53516 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 339-467 chr5 147563207 147563455 + 2 NA intron (NR_038902, intron 1 of 3) intron (NR_038902, intron 1 of 3) 3337 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 762-47 chr4 20063774 20064437 + 2 NA Intergenic L1P3|LINE|L1 -187800 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 298-424 chr7 31942573 31942827 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 127707 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 272-355 chr5 107173627 107173808 + 2 NA Intergenic Intergenic -162703 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 458-169 chr3 43450814 43451123 + 2 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) -99006 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 376-350 chr6 91934647 91934879 + 2 NA Intergenic Intergenic -244335 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 218-105 chr15 62224955 62225096 + 2 NA Intergenic Intergenic -21707 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 159-58 chr3 117436802 117436925 + 2 NA Intergenic Intergenic 254062 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 644-2 chr1 105996817 105997305 + 2 NA intron (NR_146609, intron 3 of 5) MLT1J|LTR|ERVL-MaLR 31192 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 424-248 chr6 159507511 159507818 + 2 NA Intergenic Intergenic 124133 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 340-116 chr12 118631088 118631309 + 2 NA Intergenic L1ME4a|LINE|L1 130481 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 285-210 chr2 143613340 143613619 + 2 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -323588 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 316-348 chr3 65469620 65469911 + 2 NA intron (NM_001365904, intron 5 of 24) L1M4|LINE|L1 -424051 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 284-168 chr18 4851795 4851976 + 2 NA Intergenic Intergenic -229297 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 367-92 chr12 73553882 73554180 + 2 NA Intergenic Intergenic 394841 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 382-220 chr2 140780292 140780530 + 2 NA intron (NM_018557, intron 32 of 90) intron (NM_018557, intron 32 of 90) -193726 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 233-233 chr3 66249821 66250037 + 2 NA intron (NM_001350992, intron 2 of 8) intron (NM_001350992, intron 2 of 8) 28926 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 265-395 chr8 108350565 108350773 + 2 NA Intergenic L1M1|LINE|L1 -92914 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 213-25 chr1 235285427 235285540 + 2 NA intron (NR_135074, intron 2 of 24) L1ME4b|LINE|L1 42004 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 349-501 chr8 82050842 82051164 + 2 NA Intergenic Intergenic -208717 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 251-151 chr2 4782798 4782934 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -126644 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 377-110 chr13 94735530 94735887 + 2 NA Intergenic L1M4b|LINE|L1 -22265 NR_158368 112268114 Hs.741900 NR_158368 LOC112268114 - uncharacterized LOC112268114 ncRNA 245-209 chr2 187876056 187876193 + 2 NA Intergenic Intergenic -321619 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 179-28 chr16 22059025 22059185 + 2 NA intron (NM_001164579, intron 1 of 2) intron (NM_001164579, intron 1 of 2) -33436 NM_173615 146177 Hs.10697 NM_173615 ENSG00000175267 VWA3A - von Willebrand factor A domain containing 3A protein-coding 130-3 chr1 155550643 155550765 + 2 NA intron (NM_018489, intron 1 of 27) L2a|LINE|L2 -11338 NR_147964 645676 Hs.568693 NR_027023 ENSG00000235919 ASH1L-AS1 - ASH1L antisense RNA 1 ncRNA 588-126 chr5 114840240 114840585 + 2 NA Intergenic L1MA4A|LINE|L1 -66999 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 313-393 chr4 84588292 84588535 + 2 NA intron (NM_001263, intron 1 of 12) LTR8A|LTR|ERV1 5286 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 484-113 chr2 13822548 13822889 + 2 NA Intergenic MER67C|LTR|ERV1 578240 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 195-254 chr9 74196135 74196299 + 2 NA Intergenic Intergenic -175314 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 239-251 chr3 110096581 110096765 + 2 NA Intergenic L1PA16|LINE|L1 493845 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 285-231 chr2 214748974 214749128 + 2 NA intron (NR_104215, intron 5 of 8) L2a|LINE|L2 60632 NR_104216 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 235-244 chr4 19067024 19067254 + 2 NA Intergenic L1MD2|LINE|L1 -1045264 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 380-73 chr11 95945479 95945716 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -21390 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 363-367 chr5 106376866 106377055 + 2 NA Intergenic Intergenic 634054 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 300-430 chr7 52737808 52738032 + 2 NA Intergenic Looper|DNA|PiggyBac -297713 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 265-284 chr4 125091106 125091278 + 2 NA Intergenic Intergenic -225220 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 252-201 chr2 99132777 99132945 + 2 NA intron (NM_001349013, intron 1 of 16) L1PA7|LINE|L1 8319 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 419-222 chr5 14553994 14554248 + 2 NA Intergenic Intergenic -27671 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 307-123 chr13 91289223 91289497 + 2 NA Intergenic Intergenic -58460 NR_027349 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 370-3 chr1 50011331 50011630 + 2 NA intron (NM_001323575, intron 1 of 12) L1MA1|LINE|L1 12474 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 208-116 chr2 51513393 51513561 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 480876 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 214-86 chr12 120878255 120878408 + 2 NA intron (NM_139015, intron 1 of 10) intron (NM_139015, intron 1 of 10) 26027 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 303-146 chr15 85430350 85430605 + 2 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 49874 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 279-98 chr14 26661748 26661930 + 2 NA intron (NR_147061, intron 2 of 6) intron (NR_147061, intron 2 of 6) 63192 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 523-239 chr6 10182330 10182729 + 2 NA Intergenic Intergenic -221973 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 252-51 chr10 84033949 84034099 + 2 NA Intergenic L1MEg|LINE|L1 -105485 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 338-522 chr7 158242817 158243035 + 2 NA intron (NM_001308267, intron 2 of 21) L1M3|LINE|L1 289887 NR_030325 693180 NR_030325 ENSG00000207637 MIR595 MIRN595|hsa-mir-595 microRNA 595 ncRNA 235-224 chr3 12422087 12422302 + 2 NA intron (NM_138712, intron 7 of 7) intron (NM_138712, intron 7 of 7) -62238 NM_001145394 80746 Hs.335550 NM_025265 ENSG00000154743 TSEN2 PCH2B|SEN2|SEN2L tRNA splicing endonuclease subunit 2 protein-coding 249-262 chr3 76209453 76209685 + 2 NA Intergenic Intergenic -424020 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 260-303 chr4 45343243 45343449 + 2 NA Intergenic Intergenic -616712 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 324-175 chr15 26999678 26999907 + 2 NA intron (NM_001270873, intron 2 of 5) L1MEc|LINE|L1 28611 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 551-6 chr1 84338282 84338778 + 2 NA intron (NM_001134663, intron 3 of 3) AluSx1|SINE|Alu 35879 NM_001134664 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 532-77 chr15 57574412 57574760 + 2 NA Intergenic Intergenic -17318 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 381-90 chr12 122418644 122418973 + 2 NA intron (NM_198240, intron 1 of 23) intron (NM_198240, intron 1 of 23) 3761 NM_001247997 6249 Hs.524809 NM_002956 ENSG00000130779 CLIP1 CLIP|CLIP-170|CLIP170|CYLN1|RSN CAP-Gly domain containing linker protein 1 protein-coding 799-35 chr3 14081720 14082215 + 2 NA Intergenic Intergenic 42903 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 503-42 chr10 107762866 107763258 + 2 NA Intergenic L1MCa|LINE|L1 306231 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 469-55 chr11 80560315 80560719 + 2 NA Intergenic MIRb|SINE|MIR 202286 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 295-340 chr4 60493146 60493338 + 2 NA Intergenic Intergenic -429377 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 401-98 chr15 26278110 26278338 + 2 NA Intergenic L1MB7|LINE|L1 162411 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 289-67 chr10 96424996 96425236 + 2 NA intron (NM_012465, intron 5 of 20) L1ME4b|LINE|L1 -65751 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 191-15 chr1 115719920 115720070 + 2 NA intron (NM_001232, intron 7 of 10) intron (NM_001232, intron 7 of 10) 48810 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 303-70 chr11 79745350 79745565 + 2 NA Intergenic Intergenic -304427 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 337-408 chr4 104430050 104430292 + 2 NA Intergenic Intergenic -60794 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 270-60 chr11 78733085 78733300 + 2 NA intron (NM_001098816, intron 20 of 33) L3|LINE|CR1 -158328 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 635-72 chr4 26111114 26111571 + 2 NA Intergenic Intergenic 197150 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 263-388 chr7 30455087 30455279 + 2 NA non-coding (NR_149002, exon 5 of 15) non-coding (NR_149002, exon 5 of 15) 23601 NM_006092 10392 Hs.405153 NM_006092 ENSG00000106100 NOD1 CARD4|CLR7.1|NLRC1 nucleotide binding oligomerization domain containing 1 protein-coding 277-336 chr5 132131127 132131277 + 2 NA Intergenic FLAM_C|SINE|Alu -53674 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 504-72 chr14 62565519 62565937 + 2 NA Intergenic L2a|LINE|L2 -425755 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 284-138 chr15 65201276 65201467 + 2 NA intron (NM_003613, intron 8 of 8) L2c|LINE|L2 10102 NM_003613 8483 Hs.442180 NM_003613 ENSG00000138615 CILP CILP-1|HsT18872 cartilage intermediate layer protein protein-coding 489-103 chr17 17402218 17402656 + 2 NA Intergenic MIRb|SINE|MIR -74563 NM_018019 55090 Hs.244595 NM_018019 ENSG00000141026 MED9 MED25 mediator complex subunit 9 protein-coding 364-45 chr10 17413422 17413715 + 2 NA intron (NM_001004470, intron 2 of 7) intron (NM_001004470, intron 2 of 7) 26632 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 301-175 chr18 11270610 11270764 + 2 NA Intergenic Intergenic -121925 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 380-296 chr5 9626135 9626425 + 2 NA Intergenic Intergenic 4071 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 612-148 chr8 139267609 139268111 + 2 NA Intergenic Intergenic -353819 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 484-124 chr2 48709720 48710133 + 2 NA intron (NM_000233, intron 7 of 10) intron (NM_000233, intron 7 of 10) 45798 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 383-64 chr11 103777456 103777757 + 2 NA Intergenic L1MB1|LINE|L1 -72300 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 369-358 chr6 66622907 66623251 + 2 NA Intergenic L1MA4|LINE|L1 835200 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 526-132 chr2 107157562 107158068 + 2 NA intron (NR_049853, intron 2 of 3) L1MA6|LINE|L1 191710 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 447-112 chr19 41794912 41795161 + 2 NA Intergenic L1MC4a|LINE|L1 -1551 NR_102333 1084 Hs.11 NM_001815 ENSG00000170956 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding 209-171 chr20 4504871 4505016 + 2 NA Intergenic Intergenic -181513 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 445-109 chr19 50846632 50846988 + 2 NA intron (NR_131205, intron 2 of 2) intron (NR_131205, intron 2 of 2) -8105 NM_001648 354 Hs.171995 NM_001648 ENSG00000142515 KLK3 APS|KLK2A1|PSA|hK3 kallikrein related peptidase 3 protein-coding 376-157 chr18 66938035 66938241 + 2 NA Intergenic Intergenic -143446 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 372-302 chr22 33872094 33872438 + 2 NA intron (NM_001362949, intron 1 of 15) MIR|SINE|MIR 48162 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 454-213 chr3 124939116 124939503 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -4558 NM_033049 56667 Hs.5940 NM_033049 ENSG00000173702 MUC13 DRCC1|MUC-13 mucin 13, cell surface associated protein-coding 283-80 chr11 55031810 55032044 + 2 NA Intergenic ALR/Alpha|Satellite|centr -230228 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 328-111 chr12 62443721 62443942 + 2 NA Intergenic L1PA13|LINE|L1 -22995 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 436-85 chr14 61415375 61415736 + 2 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 94112 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 413-41 chr10 78272221 78272498 + 2 NA intron (NR_073447, intron 1 of 2) intron (NR_073447, intron 1 of 2) 5017 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 333-505 chr6 62192482 62192666 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 93651 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 413-73 chr12 107432222 107432610 + 2 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) 111828 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 269-399 chr8 68834436 68834589 + 2 NA Intergenic L1MEc|LINE|L1 269678 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 435-170 chr4 67880878 67881279 + 2 NA intron (NM_004262, intron 1 of 9) intron (NM_004262, intron 1 of 9) 2924 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 397-143 chr2 21824563 21824821 + 2 NA Intergenic Intergenic -114040 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 335-408 chr5 10915237 10915511 + 2 NA Intergenic Intergenic -154140 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 205-153 chr2 166204160 166204345 + 2 NA intron (NM_001365536, intron 25 of 26) intron (NM_001365536, intron 25 of 26) -55091 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 227-257 chr4 73031707 73031854 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 37936 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 394-13 chr1 91062108 91062416 + 2 NA Intergenic Intergenic -40007 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 516-85 chr15 81165961 81166326 + 2 NA Intergenic AluJb|SINE|Alu -30736 NM_001352684 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 219-320 chr6 135066812 135066974 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -12071 NM_001145158 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 922-23 chr3 78130477 78131206 + 2 NA Intergenic Intergenic -81878 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 272-20 chr1 175712636 175712859 + 2 NA intron (NM_003285, intron 1 of 22) MSTB|LTR|ERVL-MaLR 30848 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 522-101 chr17 11463572 11463931 + 2 NA intron (NM_001173462, intron 3 of 4) L1ME3G|LINE|L1 -134719 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 347-348 chr4 72159566 72159802 + 2 NA Intergenic Intergenic 120552 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 273-181 chr18 3780281 3780487 + 2 NA intron (NM_001242762, intron 2 of 9) MLT1D|LTR|ERVL-MaLR 64974 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 364-428 chr8 20485290 20485565 + 2 NA Intergenic Intergenic 129499 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 285-455 chr9 40893249 40893421 + 2 NA Intergenic ALR/Alpha|Satellite|centr 35757 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 223-248 chr4 56757355 56757486 + 2 NA Intergenic Intergenic 64053 NR_073417 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 406-215 chr4 149941035 149941311 + 2 NA Intergenic Intergenic -125330 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 619-2 chr1 34907142 34907624 + 2 NA 5' UTR (NM_001080418, exon 2 of 12) 5' UTR (NM_001080418, exon 2 of 12) 22267 NM_001080418 58512 Hs.436393 NM_001080418 ENSG00000116544 DLGAP3 DAP3|SAPAP3 DLG associated protein 3 protein-coding 320-315 chr20 43906558 43906829 + 2 NA Intergenic L2c|LINE|L2 -8159 NM_001098797 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 306-222 chr2 14312070 14312291 + 2 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 88778 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 269-11 chr1 74252031 74252209 + 2 NA intron (NM_015978, intron 4 of 24) intron (NM_015978, intron 4 of 24) 16733 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 320-160 chr14 89120155 89120388 + 2 NA Intergenic Intergenic 295620 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 312-169 chr15 83642162 83642393 + 2 NA Intergenic L1MA8|LINE|L1 -11846 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 221-287 chr7 84276528 84276727 + 2 NA Intergenic Intergenic -81838 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 439-25 chr10 27515074 27515346 + 2 NA intron (NR_046172, intron 2 of 5) intron (NR_046172, intron 2 of 5) 10906 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 331-438 chr5 145377343 145377549 + 2 NA Intergenic L1PA13|LINE|L1 457896 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 492-95 chr14 87550089 87550526 + 2 NA Intergenic L1MA7|LINE|L1 104987 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 572-29 chr11 93600479 93601009 + 2 NA Intergenic L1MC4|LINE|L1 -57353 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 352-566 chr9 108310025 108310267 + 2 NA Intergenic L2c|LINE|L2 545840 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 213-69 chr12 33653213 33653368 + 2 NA Intergenic L2a|LINE|L2 -213471 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 172-92 chr4 54620813 54620915 + 2 NA Intergenic L1MB7|LINE|L1 -13733 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 293-57 chr11 26182682 26182837 + 2 NA Intergenic Intergenic -6364 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 305-524 chr8 40669657 40669831 + 2 NA intron (NM_001135731, intron 4 of 5) Tigger2|DNA|TcMar-Tigger 228082 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 270-39 chr10 63825298 63825496 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -303507 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 421-317 chr9 36053096 36053415 + 2 NA intron (NM_021111, intron 2 of 20) intron (NM_021111, intron 2 of 20) 16342 NM_001316347 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 556-5 chr1 84613596 84613993 + 2 NA intron (NR_125761, intron 2 of 2) intron (NR_125761, intron 2 of 2) 7237 NR_125761 103695366 Hs.576097 NR_125761 LINC01461 TCONS_00001552 long intergenic non-protein coding RNA 1461 ncRNA 298-49 chr10 64646514 64646697 + 2 NA Intergenic Intergenic -178923 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 197-95 chr2 55403770 55403884 + 2 NA intron (NM_001254943, intron 2 of 33) intron (NM_001254943, intron 2 of 33) 16029 NM_001254943 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 225-294 chr5 133635168 133635286 + 2 NA Intergenic Intergenic -22686 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 231-86 chr13 92279128 92279274 + 2 NA intron (NM_004466, intron 7 of 7) L1M4|LINE|L1 73006 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 303-392 chr6 39562705 39562875 + 2 NA intron (NM_001289020, intron 10 of 21) intron (NM_001289020, intron 10 of 21) -131400 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 327-162 chr15 25590057 25590368 + 2 NA Intergenic Intergenic -151156 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 197-165 chr5 38067670 38067827 + 2 NA intron (NR_147009, intron 2 of 2) MLT1K|LTR|ERVL-MaLR 42051 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 456-263 chr5 161143874 161144233 + 2 NA Intergenic L1PA12|LINE|L1 -205427 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 425-309 chr8 114468252 114468619 + 2 NA Intergenic Intergenic -1031496 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 266-73 chr11 112813663 112813913 + 2 NA Intergenic Intergenic -147632 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 509-56 chr12 5890536 5890912 + 2 NA intron (NM_001278596, intron 3 of 25) intron (NM_001278596, intron 3 of 25) 54535 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 406-251 chr5 160663983 160664365 + 2 NA intron (NM_001366652, intron 6 of 24) intron (NM_001366652, intron 6 of 24) 21217 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 265-353 chr7 15336458 15336684 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 225444 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 239-341 chr6 5050729 5050895 + 2 NA intron (NR_126015, intron 2 of 3) L1M4c|LINE|L1 20840 NR_126019 100129461 Hs.131700 NR_126015 ENSG00000272142 LYRM4-AS1 - LYRM4 antisense RNA 1 ncRNA 419-185 chr3 81722981 81723285 + 2 NA intron (NM_000158, intron 1 of 15) intron (NM_000158, intron 1 of 15) 38512 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 240-173 chr16 82962063 82962209 + 2 NA intron (NR_110937, intron 1 of 2) MLT1D|LTR|ERVL-MaLR 28162 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 336-334 chr21 19199067 19199318 + 2 NA Intergenic HAL1|LINE|L1 -439380 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 435-143 chr21 33637523 33637800 + 2 NA intron (NM_145858, intron 1 of 12) intron (NM_145858, intron 1 of 12) 4080 NM_145858 9946 Hs.352671 NM_145311 ENSG00000205758 CRYZL1 4P11|QOH-1 crystallin zeta like 1 protein-coding 315-367 chr5 24275483 24275658 + 2 NA Intergenic Intergenic 324222 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 297-315 chr4 22546479 22546672 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -30509 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 416-4 chr1 33911217 33911438 + 2 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) 42371 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 347-228 chr2 80657596 80657817 + 2 NA Intergenic L1MB1|LINE|L1 344327 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 459-235 chr5 46174734 46175095 + 2 NA Intergenic ALR/Alpha|Satellite|centr -478534 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 611-64 chr18 6392239 6392698 + 2 NA intron (NM_001365765, intron 1 of 18) AluSz6|SINE|Alu -18043 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 580-34 chr12 12651319 12651741 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 39654 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 450-192 chr3 46431358 46431656 + 2 NA Intergenic HERVK3-int|LTR|ERVK -7840 NR_151704 105377068 NR_151704 ENSG00000283646 LINC02009 - long intergenic non-protein coding RNA 2009 ncRNA 472-174 chr2 190623719 190624057 + 2 NA Intergenic L1MA4|LINE|L1 -25007 NM_001321313 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 864-36 chr5 117270047 117270682 + 2 NA Intergenic Intergenic -145148 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 255-85 chr12 126198797 126199045 + 2 NA Intergenic Intergenic 102929 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 604-69 chr18 29150166 29150589 + 2 NA Intergenic Intergenic -973247 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 345-520 chr8 70422083 70422355 + 2 NA Intergenic MIR3|SINE|MIR -18002 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 285-252 chr22 31986459 31986732 + 2 NA intron (NR_149128, intron 3 of 4) intron (NR_149128, intron 3 of 4) 15772 NR_149128 105372999 Hs.512525 NR_149128 LINC02558 - long intergenic non-protein coding RNA 2558 ncRNA 459-156 chr20 5255934 5256318 + 2 NA Intergenic L1MD1|LINE|L1 60606 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 331-67 chr10 106092359 106092552 + 2 NA Intergenic Intergenic -47710 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 605-88 chr5 14000140 14000534 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -55857 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 408-58 chr11 28458833 28459093 + 2 NA Intergenic Intergenic 18585 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 530-268 chr9 12245018 12245377 + 2 NA Intergenic Intergenic -448188 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 480-161 chr2 159703634 159704066 + 2 NA intron (NR_110586, intron 2 of 2) AluJo|SINE|Alu 8592 NR_110586 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 263-366 chr6 107695444 107695624 + 2 NA Intergenic Intergenic 36616 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 242-74 chr12 31680805 31681022 + 2 NA intron (NR_103522, intron 7 of 8) intron (NR_103522, intron 7 of 8) 21225 NM_001135863 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 409-226 chr4 108531547 108531772 + 2 NA Intergenic Intergenic -25574 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 253-278 chr3 180516967 180517152 + 2 NA Intergenic L1PA13|LINE|L1 -85104 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 355-85 chr11 29635128 29635376 + 2 NA Intergenic Intergenic 16450 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 456-41 chr10 109716018 109716431 + 2 NA Intergenic Intergenic 207022 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 279-329 chr5 77956304 77956476 + 2 NA intron (NR_105012, intron 1 of 1) MER20B|DNA|hAT-Charlie -1857 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 505-151 chr2 99249915 99250291 + 2 NA intron (NM_175735, intron 2 of 5) L2a|LINE|L2 5004 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 491-128 chr2 126842842 126843183 + 2 NA Intergenic L1ME2z|LINE|L1 -55878 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 221-285 chr7 64682308 64682494 + 2 NA intron (NM_001013746, intron 2 of 4) HERVH-int|LTR|ERV1 3337 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 290-383 chr6 48992450 48992682 + 2 NA Intergenic L1PB1|LINE|L1 470687 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 224-90 chr14 82078532 82078676 + 2 NA Intergenic Intergenic -335466 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 360-448 chr8 16938281 16938503 + 2 NA Intergenic L1MC2|LINE|L1 63953 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 274-279 chr4 33796994 33797189 + 2 NA Intergenic Intergenic 242802 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 311-328 chr22 48287628 48287832 + 2 NA Intergenic L2a|LINE|L2 13366 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 209-69 chr12 40430418 40430613 + 2 NA intron (NM_173600, intron 21 of 173) intron (NM_173600, intron 21 of 173) 37121 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 282-156 chr16 48494247 48494438 + 2 NA Intergenic HAL1ME|LINE|L1 -108929 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 222-358 chr8 31960161 31960334 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -65489 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 406-163 chr2 236277280 236277533 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -13061 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 347-115 chr13 109125855 109126066 + 2 NA intron (NM_015011, intron 30 of 34) intron (NM_015011, intron 30 of 34) 41343 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 359-446 chr7 33324898 33325196 + 2 NA intron (NM_198428, intron 9 of 22) L1MA3|LINE|L1 195483 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 346-413 chr5 174443539 174443715 + 2 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 107273 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 372-252 chr2 122619388 122619619 + 2 NA Intergenic L1MEd|LINE|L1 453978 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 185-52 chr13 92238929 92239030 + 2 NA intron (NM_004466, intron 7 of 7) L1MB7|LINE|L1 113228 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 372-308 chr22 49236088 49236400 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 307222 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 236-115 chr14 61864002 61864188 + 2 NA intron (NM_001367656, intron 1 of 7) L1ME2|LINE|L1 51392 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 206-229 chr5 174271228 174271406 + 2 NA Intergenic Intergenic -65037 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 407-287 chr7 34450200 34450464 + 2 NA intron (NR_033665, intron 2 of 3) L1M5|LINE|L1 -207886 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 234-93 chr14 48022801 48022997 + 2 NA Intergenic L1MC4|LINE|L1 -227885 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 211-256 chr6 40910560 40910723 + 2 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 112639 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 467-185 chr3 118126384 118126777 + 2 NA Intergenic L1MEg|LINE|L1 -435655 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 266-124 chr15 26829456 26829713 + 2 NA Intergenic L1MC3|LINE|L1 -37478 NM_000810 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 917-11 chr19 23141424 23142093 + 2 NA intron (NM_001277403, intron 3 of 3) L1M4c|LINE|L1 24733 NM_001277403 100129543 Hs.427120 NM_001277403 ENSG00000183850 ZNF730 - zinc finger protein 730 protein-coding 382-368 chr6 161820318 161820610 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 349487 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 225-122 chr17 12280261 12280374 + 2 NA Intergenic Intergenic 198418 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 440-30 chr10 111911481 111911897 + 2 NA Intergenic (AAAAC)n|Simple_repeat|Simple_repeat 272076 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 197-33 chr10 125598511 125598639 + 2 NA intron (NM_001318133, intron 3 of 3) intron (NM_001318133, intron 3 of 3) 24204 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 350-371 chr4 170349918 170350213 + 2 NA Intergenic Intergenic 123474 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 186-141 chr6 77440421 77440539 + 2 NA Intergenic LTR41|LTR|ERVL 23542 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 391-83 chr12 118949838 118950045 + 2 NA Intergenic Intergenic -31600 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 203-18 chr1 248521325 248521494 + 2 NA promoter-TSS (NM_001013355) promoter-TSS (NM_001013355) -238 NM_001013355 391211 Hs.553784 NM_001013355 ENSG00000188558 OR2G6 - olfactory receptor family 2 subfamily G member 6 protein-coding 217-399 chrX 88066781 88066962 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 549069 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 336-393 chr4 32423237 32423426 + 2 NA Intergenic L1MA9|LINE|L1 72293 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 265-234 chr3 5442880 5443079 + 2 NA Intergenic L1M4|LINE|L1 -192724 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 276-82 chr11 60645440 60645586 + 2 NA intron (NR_026946, intron 3 of 6) L1MA9|LINE|L1 29762 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 268-197 chr2 76143315 76143558 + 2 NA Intergenic Intergenic -432521 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 341-445 chr5 123891148 123891416 + 2 NA Intergenic L1MA4|LINE|L1 345865 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 292-209 chr2 44608935 44609106 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 247073 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 286-340 chr5 11996861 11997094 + 2 NA Intergenic L1P4|LINE|L1 -92531 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 338-418 chr5 28690145 28690328 + 2 NA Intergenic Intergenic -236634 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 378-49 chr10 27851409 27851650 + 2 NA intron (NM_018076, intron 19 of 19) L1ME1|LINE|L1 -105710 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 290-248 chr20 54119030 54119202 + 2 NA Intergenic Intergenic -48351 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 152-36 chr17 58375111 58375235 + 2 NA intron (NM_001305544, intron 2 of 9) L2|LINE|L2 -22972 NM_003168 6827 Hs.439481 NM_003168 ENSG00000213246 SUPT4H1 SPT4|SPT4H|SUPT4H|Supt4a SPT4 homolog, DSIF elongation factor subunit protein-coding 368-483 chr9 79843448 79843740 + 2 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) 19064 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 326-125 chr12 46759984 46760290 + 2 NA Intergenic Intergenic 65860 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 232-219 chr20 59239358 59239503 + 2 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 48410 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 230-209 chr20 54362010 54362200 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -113488 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 178-5 chr1 77171494 77171610 + 2 NA intron (NM_005482, intron 3 of 10) intron (NM_005482, intron 3 of 10) 47878 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 319-132 chr14 30167472 30167656 + 2 NA Intergenic Intergenic -239717 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 303-363 chr5 84335612 84335791 + 2 NA intron (NM_001278642, intron 1 of 9) L2c|LINE|L2 49166 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 267-293 chr4 67194344 67194498 + 2 NA Intergenic Intergenic 227579 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 253-408 chr8 114039028 114039191 + 2 NA Intergenic L1MA4A|LINE|L1 -602170 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 231-271 chr5 8783060 8783224 + 2 NA Intergenic Intergenic -56590 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 322-583 chrX 81540358 81540645 + 2 NA Intergenic L1MA3|LINE|L1 338399 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 249-100 chr13 26460314 26460464 + 2 NA Intergenic Intergenic -97294 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 260-391 chr6 160968222 160968448 + 2 NA Intergenic Intergenic -23392 NM_006724 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 266-145 chr17 15143370 15143584 + 2 NA Intergenic Intergenic -37290 NR_103559 94151 Hs.98684 NR_103559 CDRT8 - CMT1A duplicated region transcript 8 ncRNA 243-116 chr13 105219465 105219633 + 2 NA Intergenic Intergenic -246318 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 592-50 chr14 72830865 72831244 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 61595 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 346-403 chr5 124495058 124495287 + 2 NA Intergenic Intergenic -56652 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 371-165 chr2 50021438 50021731 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -47381 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 236-143 chr17 52313586 52313746 + 2 NA Intergenic Intergenic -76856 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 162-12 chr1 240417642 240417776 + 2 NA intron (NM_020066, intron 15 of 17) intron (NM_020066, intron 15 of 17) 194446 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 288-135 chr15 59298525 59298708 + 2 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 74255 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 298-451 chr8 43460345 43460580 + 2 NA Intergenic Intergenic 168020 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 370-72 chr10 126077116 126077425 + 2 NA intron (NM_001288974, intron 11 of 18) L1PA16|LINE|L1 -103997 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 327-391 chr5 39139012 39139243 + 2 NA intron (NM_001243093, intron 5 of 18) intron (NM_001243093, intron 5 of 18) -64728 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 315-130 chr14 51526757 51526990 + 2 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 37745 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 323-174 chr16 12750661 12750840 + 2 NA intron (NM_018340, intron 2 of 3) AluSz|SINE|Alu 30429 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 296-467 chr8 89671112 89671371 + 2 NA Intergenic L1ME3D|LINE|L1 86470 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 364-429 chr8 21802112 21802382 + 2 NA Intergenic MIRc|SINE|MIR -13372 NM_001165038 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 531-270 chr9 134309279 134309723 + 2 NA Intergenic L1M5|LINE|L1 -14104 NR_146518 105376310 Hs.573484 NR_146518 ENSG00000223729 LINC02247 - long intergenic non-protein coding RNA 2247 ncRNA 322-269 chr2 134599396 134599564 + 2 NA intron (NM_030923, intron 2 of 7) MLT1A0|LTR|ERVL-MaLR 119520 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 417-294 chr8 138573165 138573425 + 2 NA Intergenic L2c|LINE|L2 -75565 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 268-201 chr2 99776904 99777137 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -287003 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 364-194 chr2 8674045 8674376 + 2 NA intron (NR_110154, intron 1 of 3) L1MDa|LINE|L1 7651 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 481-104 chr15 95095947 95096326 + 2 NA Intergenic Intergenic 230964 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 507-225 chr6 166297719 166298125 + 2 NA Intergenic CpG 10470 NM_175922 285800 Hs.731862 NM_175922 ENSG00000176381 PRR18 - proline rich 18 protein-coding 323-75 chr11 25558743 25558945 + 2 NA Intergenic Intergenic -630279 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 154-101 chr7 109441261 109441360 + 2 NA Intergenic L1MEd|LINE|L1 518903 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 325-232 chr17 74054495 74054771 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -149045 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 584-46 chr15 95722993 95723475 + 2 NA Intergenic L1MEf|LINE|L1 290141 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 338-607 chrX 128529668 128529901 + 2 NA Intergenic L1PA16|LINE|L1 -477381 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 528-132 chr2 125707533 125708023 + 2 NA Intergenic Intergenic 410207 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 546-44 chr11 115448530 115448968 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 51993 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 411-112 chr16 82210782 82211117 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -40725 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 438-181 chr3 159868324 159868737 + 2 NA intron (NM_001197113, intron 6 of 10) U2|snRNA|snRNA 28669 NM_001197109 29970 Hs.134665 NM_014575 ENSG00000151967 SCHIP1 SCHIP-1 schwannomin interacting protein 1 protein-coding 349-424 chr5 115869230 115869563 + 2 NA intron (NM_001318093, intron 2 of 6) intron (NM_001318093, intron 2 of 6) 26909 NR_157087 1176 Hs.406191 NM_001284 ENSG00000177879 AP3S1 CLAPS3|Sigma3A adaptor related protein complex 3 subunit sigma 1 protein-coding 282-15 chr1 164108346 164108581 + 2 NA Intergenic Intergenic -450897 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 355-490 chr8 49284993 49285310 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 212807 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 465-136 chr2 136717226 136717613 + 2 NA Intergenic MER89|LTR|ERV1 -48126 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 373-185 chr2 22509324 22509523 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -27056 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 859-5 chr11 50650896 50651585 + 2 NA Intergenic ALR/Alpha|Satellite|centr 242093 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 207-28 chr1 238913254 238913379 + 2 NA Intergenic Intergenic -427299 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 479-130 chr20 63353137 63353464 + 2 NA intron (NR_046317, intron 4 of 5) intron (NR_046317, intron 4 of 5) -6688 NR_110634 100130587 Hs.640129 NR_110634 ENSG00000203900 LOC100130587 - uncharacterized LOC100130587 ncRNA 847-2 chr1 113510654 113511201 + 2 NA intron (NM_001142782, intron 1 of 20) L2c|LINE|L2 120412 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 385-205 chr20 714304 714523 + 2 NA Intergenic L1MEc|LINE|L1 -38611 NM_033129 85508 Hs.355284 NM_033129 ENSG00000215397 SCRT2 ZNF898B scratch family transcriptional repressor 2 protein-coding 330-141 chr13 82607852 82608024 + 2 NA Intergenic MER11A|LTR|ERVK 1274455 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 610-53 chr15 26122940 26123391 + 2 NA intron (NR_038852, intron 2 of 5) intron (NR_038852, intron 2 of 5) 7352 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 385-394 chr8 136220873 136221118 + 2 NA Intergenic Intergenic -309803 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 839-22 chr2 163639995 163640603 + 2 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 95709 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 530-99 chr17 55347046 55347429 + 2 NA Intergenic Intergenic 74598 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 371-249 chr3 105393480 105393738 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 26700 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 196-198 chr5 15897198 15897315 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -37926 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 199-169 chr3 173809515 173809667 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 111205 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 203-231 chr8 91204308 91204456 + 2 NA intron (NM_001354470, intron 3 of 3) intron (NM_001354470, intron 3 of 3) -1103 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 349-328 chr3 59779320 59779574 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -120950 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 312-161 chr15 49763714 49764001 + 2 NA Intergenic L1MB1|LINE|L1 142809 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 627-76 chr3 182658753 182659268 + 2 NA Intergenic AluSx|SINE|Alu -134494 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 705-69 chr3 94843341 94843906 + 2 NA Intergenic Intergenic -94640 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 371-286 chr4 114124850 114125067 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -145311 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 345-555 chr9 79844961 79845207 + 2 NA intron (NR_121213, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 20554 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 334-433 chr5 119651383 119651594 + 2 NA Intergenic Intergenic 21929 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 335-549 chr8 132503052 132503344 + 2 NA Intergenic MIRb|SINE|MIR -22103 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 352-252 chr2 146187512 146187715 + 2 NA Intergenic Intergenic -399444 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 265-96 chr13 99971446 99971665 + 2 NA exon (NM_033132, exon 1 of 2) exon (NM_033132, exon 1 of 2) 354 NM_033132 85416 Hs.508570 NM_033132 ENSG00000139800 ZIC5 - Zic family member 5 protein-coding 315-142 chr15 26287241 26287434 + 2 NA Intergenic L1MA9|LINE|L1 171524 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 401-318 chr8 67252491 67252829 + 2 NA intron (NM_006421, intron 18 of 38) intron (NM_006421, intron 18 of 38) 91121 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 280-397 chr8 16255981 16256137 + 2 NA Intergenic L2|LINE|L2 -63268 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 309-328 chr22 27716613 27716885 + 2 NA Intergenic Intergenic 85007 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 324-255 chr2 48789556 48789829 + 2 NA Intergenic Intergenic -33968 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 444-35 chr11 26383283 26383566 + 2 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 51294 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 374-263 chr3 135797870 135798237 + 2 NA Intergenic L1ME4a|LINE|L1 -167675 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 263-2 chr1 37416593 37416808 + 2 NA Intergenic L2a|LINE|L2 57743 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 274-119 chr14 44585757 44585929 + 2 NA Intergenic Intergenic 78434 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 359-262 chr2 204286986 204287177 + 2 NA Intergenic Intergenic -258394 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 309-264 chr2 130957991 130958155 + 2 NA intron (NM_001367493, intron 4 of 13) intron (NM_001367493, intron 4 of 13) 121159 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 501-117 chr2 145335191 145335674 + 2 NA Intergenic Intergenic 667465 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 496-234 chr6 50255972 50256364 + 2 NA Intergenic L1PA13|LINE|L1 -206239 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 372-53 chr10 81989311 81989615 + 2 NA intron (NR_163253, intron 2 of 10) L2|LINE|L2 111776 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 263-39 chr10 26388633 26388880 + 2 NA Intergenic Intergenic -49585 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 517-43 chr11 38673133 38673511 + 2 NA Intergenic MIRb|SINE|MIR 24464 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 201-57 chr12 37846602 37846776 + 2 NA Intergenic ALR/Alpha|Satellite|centr -470085 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 430-169 chr2 223283130 223283497 + 2 NA Intergenic MER57B2|LTR|ERV1 231383 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 358-531 chrX 102970191 102970378 + 2 NA Intergenic L1PBa|LINE|L1 33012 NM_001031834 282808 Hs.449517 NM_001031834 ENSG00000102128 RAB40AL MRXSMP|RAR2|RLGP RAB40A like protein-coding 279-341 chr5 132242330 132242523 + 2 NA Intergenic L1PB|LINE|L1 -14573 NM_001017974 8974 Hs.519568 NM_004199 ENSG00000072682 P4HA2 MYP25 prolyl 4-hydroxylase subunit alpha 2 protein-coding 202-19 chr1 217290950 217291096 + 2 NA Intergenic Intergenic -153321 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 358-325 chr4 31294380 31294689 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 123390 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 227-85 chr12 80941645 80941817 + 2 NA Intergenic Intergenic -3816 NM_004664 8825 Hs.144333 NM_004664 ENSG00000111052 LIN7A LIN-7A|LIN7|MALS-1|MALS1|TIP-33|VELI1 lin-7 homolog A, crumbs cell polarity complex component protein-coding 255-20 chr10 10426605 10426856 + 2 NA intron (NR_120637, intron 2 of 3) intron (NR_120637, intron 2 of 3) 35619 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 525-283 chr9 115190814 115191155 + 2 NA intron (NR_163556, intron 1 of 7) L1MA4|LINE|L1 49166 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 387-393 chr9 79087704 79088014 + 2 NA Intergenic Intergenic 57807 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 224-87 chr14 57450974 57451179 + 2 NA Intergenic L1MC1|LINE|L1 42781 NM_001283059 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 450-321 chr9 74357698 74358012 + 2 NA Intergenic Intergenic -13676 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 336-45 chr1 220384456 220384652 + 2 NA Intergenic Intergenic -112101 NM_012414 25782 Hs.654849 NM_012414 ENSG00000118873 RAB3GAP2 RAB3-GAP150|RAB3GAP150|SPG69|WARBM2|p150 RAB3 GTPase activating non-catalytic protein subunit 2 protein-coding 619-27 chr11 41598650 41599055 + 2 NA Intergenic Intergenic -115716 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 572-79 chr19 51050427 51050775 + 2 NA Intergenic L1ME5|LINE|L1 14318 NR_145467 26085 Hs.165296 NM_015596 ENSG00000167759 KLK13 KLK-L4|KLKL4 kallikrein related peptidase 13 protein-coding 309-393 chr4 62586275 62586516 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -424630 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 403-196 chr3 40764460 40764774 + 2 NA Intergenic L1ME3G|LINE|L1 239657 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 250-165 chr17 69207937 69208159 + 2 NA intron (NM_080282, intron 10 of 39) L1MA8|LINE|L1 26964 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 366-287 chr3 145740879 145741157 + 2 NA Intergenic LTR53-int|LTR|ERVL 328167 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 343-110 chr12 102672815 102673067 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 151458 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 246-114 chr14 46829703 46829870 + 2 NA Intergenic Intergenic -178005 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 227-68 chr11 86371173 86371357 + 2 NA Intergenic LTR8|LTR|ERV1 -3471 NM_021827 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 255-287 chr4 23493816 23493974 + 2 NA Intergenic Intergenic 387397 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 392-151 chr2 108140129 108140349 + 2 NA Intergenic L1MA4A|LINE|L1 77602 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 446-268 chr6 113440716 113441051 + 2 NA Intergenic LTR79|LTR|ERVL -7436 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 282-408 chr6 117132022 117132264 + 2 NA Intergenic Intergenic -133415 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 321-197 chr15 70744793 70745023 + 2 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) 18650 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 333-183 chr17 33406340 33406602 + 2 NA intron (NM_001094, intron 1 of 9) MIR|SINE|MIR -113483 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 236-124 chr15 36217162 36217346 + 2 NA Intergenic Intergenic 290398 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 351-326 chr3 193718967 193719212 + 2 NA Intergenic L1MC1|LINE|L1 -91757 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 600-71 chr2 141751332 141751855 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 380108 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 332-99 chr11 83472828 83473021 + 2 NA intron (NM_001142699, intron 22 of 27) intron (NM_001142699, intron 22 of 27) -186517 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 406-238 chr5 116811349 116811564 + 2 NA Intergenic Intergenic -49247 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 387-380 chr8 139488597 139488870 + 2 NA Intergenic L1ME3A|LINE|L1 214390 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 351-119 chr14 46793190 46793501 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -141564 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 346-463 chr7 48242661 48242855 + 2 NA intron (NM_152701, intron 10 of 61) L3|LINE|CR1 71300 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 346-74 chr11 84001108 84001297 + 2 NA intron (NM_001142699, intron 11 of 27) L1MA4A|LINE|L1 272078 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 270-438 chrX 44104832 44105073 + 2 NA Intergenic Intergenic -131562 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 393-195 chr20 13556142 13556374 + 2 NA intron (NM_001323602, intron 4 of 9) L2a|LINE|L2 82674 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 247-45 chr10 82776023 82776222 + 2 NA intron (NR_163252, intron 3 of 8) L1MA9|LINE|L1 -543202 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 309-319 chr21 28402919 28403222 + 2 NA Intergenic L1MA8|LINE|L1 -136248 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 240-370 chr6 20743997 20744166 + 2 NA intron (NM_017774, intron 6 of 15) intron (NM_017774, intron 6 of 15) 209624 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 258-354 chr6 155331550 155331720 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 -17151 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 281-219 chr2 114095391 114095565 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -115494 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 552-38 chr12 11663131 11663513 + 2 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 13468 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 276-291 chr3 54162816 54163006 + 2 NA intron (NM_018398, intron 2 of 37) L2a|LINE|L2 40359 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 273-129 chr14 47607779 47608035 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 67047 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 415-121 chr2 48718399 48718733 + 2 NA intron (NM_000233, intron 6 of 10) intron (NM_000233, intron 6 of 10) 37158 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 375-107 chr12 130234820 130235054 + 2 NA Intergenic Intergenic 72478 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 304-211 chr18 49521414 49521666 + 2 NA Intergenic Intergenic -29076 NM_001199342 6139 Hs.293653 NM_000985 ENSG00000265681 RPL17 L17|PD-1|RPL23 ribosomal protein L17 protein-coding 212-357 chrX 94173653 94173819 + 2 NA Intergenic Intergenic 499530 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 238-33 chr10 28452676 28452892 + 2 NA intron (NR_134496, intron 1 of 2) L1MB1|LINE|L1 43029 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 521-188 chr5 18802370 18802735 + 2 NA Intergenic Intergenic 995278 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 257-422 chr8 123943304 123943507 + 2 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 91418 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 175-80 chr2 111030983 111031082 + 2 NA intron (NM_001371254, intron 15 of 18) intron (NM_001371254, intron 15 of 18) 84556 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 266-407 chr8 40958574 40958804 + 2 NA Intergenic L1ME3D|LINE|L1 -60863 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 535-235 chr8 32184148 32184570 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 158141 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 218-175 chr2 167342216 167342383 + 2 NA Intergenic Intergenic 154927 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 271-84 chr12 4094540 4094727 + 2 NA Intergenic L1MD1|LINE|L1 -179129 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 237-174 chr2 61531371 61531549 + 2 NA intron (NM_003400, intron 2 of 24) intron (NM_003400, intron 2 of 24) 6896 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 480-231 chr5 38323095 38323442 + 2 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -32282 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 492-178 chr3 100270284 100270620 + 2 NA intron (NM_001199198, intron 1 of 18) intron (NM_001199198, intron 1 of 18) 9460 NM_001199198 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 337-567 chr8 137175963 137176144 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 237535 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 533-19 chr10 65078411 65078783 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -154079 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 225-217 chr3 107597965 107598086 + 2 NA intron (NM_001276286, intron 2 of 16) Charlie2a|DNA|hAT-Charlie 75063 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 501-163 chr3 59272354 59272705 + 2 NA Intergenic Intergenic -222497 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 261-316 chr5 91576016 91576193 + 2 NA Intergenic L1PB|LINE|L1 -192787 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 189-50 chr14 18488976 18489140 + 2 NA Intergenic CER|Satellite|Satellite -112059 NM_001013354 440153 Hs.534880 NM_001013354 ENSG00000257115 OR11H12 - olfactory receptor family 11 subfamily H member 12 protein-coding 370-294 chr22 26978867 26979073 + 2 NA Intergenic Intergenic 75678 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 325-74 chr10 82838505 82838675 + 2 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -605670 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 296-28 chr1 247163772 247164000 + 2 NA intron (NM_003431, intron 1 of 3) L1PA14|LINE|L1 8131 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 524-72 chr15 91202731 91203094 + 2 NA intron (NM_001323040, intron 2 of 12) LTR16A|LTR|ERVL 101116 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 260-453 chr9 22624141 22624346 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -21957 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 299-29 chr1 189983560 189983763 + 2 NA Intergenic Intergenic 492349 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 284-155 chr17 14674360 14674642 + 2 NA Intergenic Intergenic -340304 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 561-127 chr3 30508269 30508775 + 2 NA Intergenic L1MA4|LINE|L1 -10346 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 419-56 chr11 100172334 100172697 + 2 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -514773 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 397-209 chr3 101215246 101215468 + 2 NA Intergenic Intergenic 105218 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 143-38 chr2 52843770 52843863 + 2 NA Intergenic L1ME1|LINE|L1 -141201 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 235-148 chr18 54039910 54040058 + 2 NA Intergenic Intergenic 182428 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 201-87 chr15 50475413 50475588 + 2 NA intron (NM_001128610, intron 8 of 19) L1ME3G|LINE|L1 51095 NM_001128610 9101 Hs.443731 NM_005154 ENSG00000138592 USP8 HumORF8|PITA4|SPG59|UBPY ubiquitin specific peptidase 8 protein-coding 174-125 chr6 56423141 56423245 + 2 NA Intergenic Intergenic -29065 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 502-92 chr14 79629339 79629790 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 350184 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 496-214 chr5 64904325 64904646 + 2 NA intron (NM_005869, intron 11 of 13) MLT1F1|LTR|ERVL-MaLR 135555 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 367-67 chr10 121162618 121162909 + 2 NA Intergenic Intergenic 311401 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 550-34 chr10 68912106 68912539 + 2 NA intron (NM_024045, intron 4 of 14) AluJr4|SINE|Alu 11007 NM_024045 79009 Hs.522984 NM_024045 ENSG00000107625 DDX50 GU2|GUB|RH-II/GuB|mcdrh DExD-box helicase 50 protein-coding 361-242 chr2 179085812 179086158 + 2 NA Intergenic L1MA2|LINE|L1 -35848 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 555-174 chr6 62701968 62702266 + 2 NA Intergenic L1M1|LINE|L1 -415890 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 147-58 chr3 55809068 55809175 + 2 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) 43473 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 247-224 chr2 199623853 199624067 + 2 NA intron (NR_110270, intron 1 of 6) intron (NR_110270, intron 1 of 6) 15892 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 317-80 chr11 34711018 34711204 + 2 NA Intergenic L1MEc|LINE|L1 78545 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 181-123 chr5 45635664 45635799 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 60649 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 612-49 chr18 6213356 6213812 + 2 NA intron (NM_001365769, intron 11 of 16) AluSq2|SINE|Alu -43160 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 230-384 chr8 120772599 120772744 + 2 NA intron (NR_125419, intron 3 of 4) intron (NR_125419, intron 3 of 4) 11418 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 423-309 chr9 10637389 10637723 + 2 NA Intergenic Intergenic 24350 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 431-124 chr2 19454098 19454462 + 2 NA Intergenic AluJo|SINE|Alu -95657 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 427-106 chr2 3696987 3697233 + 2 NA intron (NM_018436, intron 9 of 11) intron (NM_018436, intron 9 of 11) -6465 NM_001287444 728597 Hs.304233 NM_001287444 ENSG00000214866 DCDC2C - doublecortin domain containing 2C protein-coding 212-286 chr6 120637379 120637527 + 2 NA Intergenic Intergenic 622274 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 238-39 chr10 51978869 51979055 + 2 NA intron (NM_001098512, intron 5 of 17) L1PA13|LINE|L1 -279367 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 267-40 chr10 18701233 18701473 + 2 NA Intergenic Intergenic 41922 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 343-487 chr6 154453364 154453546 + 2 NA intron (NM_001368117, intron 1 of 12) intron (NM_001368117, intron 1 of 12) -19382 NM_001368119 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 469-264 chr7 48745239 48745624 + 2 NA Intergenic Intergenic -179116 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 226-180 chr2 135799250 135799422 + 2 NA intron (NM_002299, intron 12 of 16) intron (NM_002299, intron 12 of 16) -20855 NR_045486 100507600 Hs.662020 NR_045486 ENSG00000226806 LOC100507600 - uncharacterized LOC100507600 ncRNA 121-8 chr13 58671916 58672028 + 2 NA Intergenic Intergenic -438855 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 169-42 chr14 99711225 99711336 + 2 NA intron (NM_006668, intron 7 of 14) L1MA4A|LINE|L1 26982 NM_006668 10858 Hs.25121 NM_006668 ENSG00000036530 CYP46A1 CP46|CYP46 cytochrome P450 family 46 subfamily A member 1 protein-coding 571-93 chr20 41766855 41767406 + 2 NA Intergenic Intergenic -148753 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 314-528 chr7 30990357 30990516 + 2 NA Intergenic L2a|LINE|L2 26483 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 318-6 chr1 33881669 33881868 + 2 NA intron (NR_038372, intron 5 of 7) intron (NR_038372, intron 5 of 7) 12812 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 192-57 chr13 80453672 80453770 + 2 NA Intergenic L1MA5|LINE|L1 -112595 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 314-135 chr12 104425111 104425341 + 2 NA Intergenic Intergenic -31722 NM_018413 50515 Hs.17569 NM_018413 ENSG00000171310 CHST11 C4ST|C4ST-1|C4ST1|HSA269537|OCBMD carbohydrate sulfotransferase 11 protein-coding 266-342 chr5 127072532 127072763 + 2 NA intron (NM_001164479, intron 1 of 4) intron (NM_001164479, intron 1 of 4) 845 NM_001164479 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 343-319 chr22 27356121 27356451 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy 45635 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 512-30 chr10 37323293 37323653 + 2 NA intron (NR_104061, intron 3 of 4) HUERS-P3-int|LTR|ERV1 14287 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 863-10 chr13 76619365 76620106 + 2 NA Intergenic Intergenic 266670 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 425-311 chr8 116880023 116880387 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -5339 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 231-190 chr20 15714673 15714850 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 208553 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 616-173 chr8 121758336 121758765 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -117110 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 334-343 chr3 53595589 53595777 + 2 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 101072 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 267-338 chr5 89498517 89498713 + 2 NA Intergenic Intergenic 518105 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 323-166 chr15 95299443 95299704 + 2 NA intron (NR_034095, intron 1 of 3) intron (NR_034095, intron 1 of 3) 27527 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 224-246 chr5 31685286 31685441 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 46232 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 290-435 chr7 104618173 104618409 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 185801 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 446-256 chr5 166486019 166486271 + 2 NA Intergenic L1MC4|LINE|L1 440225 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 261-340 chr6 167988117 167988300 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 8869 NR_103750 100505879 Hs.225962 NM_014354 ENSG00000229921 KIF25-AS1 C6orf54|HGC6.1.1|NCRNA00300 KIF25 antisense RNA 1 ncRNA 245-162 chr18 1949678 1949920 + 2 NA Intergenic Intergenic -590170 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 347-148 chr15 53778042 53778379 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -15332 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 123-53 chr6 133279320 133279409 + 2 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 37865 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 367-359 chr5 63729246 63729603 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 232868 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 641-60 chr2 56576084 56576557 + 2 NA Intergenic L1MA4A|LINE|L1 -390550 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 237-119 chr15 60664466 60664623 + 2 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) -17025 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 396-283 chr5 84076672 84077028 + 2 NA intron (NM_001278642, intron 5 of 9) Charlie1a|DNA|hAT-Charlie 308017 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 570-14 chr1 221780033 221780415 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -38048 NR_111940 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 173-131 chr7 83356810 83356934 + 2 NA Intergenic Intergenic -193988 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 241-275 chr4 103168327 103168526 + 2 NA intron (NM_001813, intron 16 of 48) intron (NM_001813, intron 16 of 48) 29917 NM_001813 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 362-30 chr1 175811578 175811903 + 2 NA Intergenic Intergenic -65603 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 238-264 chr4 55113719 55113894 + 2 NA intron (NM_002253, intron 6 of 29) intron (NM_002253, intron 6 of 29) 11789 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 281-35 chr10 28844413 28844589 + 2 NA Intergenic L2a|LINE|L2 -1907 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 272-201 chr2 99664564 99664711 + 2 NA intron (NM_001025108, intron 11 of 23) intron (NM_001025108, intron 11 of 23) -174620 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 397-261 chr5 102110195 102110468 + 2 NA Intergenic Intergenic 185953 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 121-63 chr7 97473906 97473975 + 2 NA Intergenic Intergenic -258146 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 307-217 chr19 43841227 43841406 + 2 NA intron (NM_181845, intron 6 of 6) L1MEf|LINE|L1 13995 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 457-116 chr2 57887343 57887743 + 2 NA Intergenic Intergenic -20108 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 429-134 chr19 27662058 27662409 + 2 NA Intergenic ALR/Alpha|Satellite|centr -131198 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 548-66 chr14 20099877 20100371 + 2 NA Intergenic LTR12E|LTR|ERV1 -17344 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 657-22 chr12 41132354 41132854 + 2 NA Intergenic Intergenic -55716 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 300-162 chr18 4795109 4795264 + 2 NA Intergenic L1PA12|LINE|L1 -285996 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 336-289 chr2 133746337 133746514 + 2 NA Intergenic Intergenic -177962 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 333-290 chr2 235173620 235173887 + 2 NA Intergenic Intergenic 146018 NM_001371306 364-261 chr22 32487842 32488146 + 2 NA intron (NM_001257990, intron 5 of 8) intron (NM_001257990, intron 5 of 8) 12757 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 519-192 chr6 39713472 39713983 + 2 NA intron (NM_001351503, intron 3 of 3) intron (NM_001351503, intron 3 of 3) 11681 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 456-264 chr5 162805768 162806130 + 2 NA Intergenic Intergenic -631622 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 339-166 chr14 73200643 73200847 + 2 NA intron (NM_000021, intron 8 of 11) intron (NM_000021, intron 8 of 11) -36761 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 939-19 chr3 53945566 53946163 + 2 NA Intergenic MamRep1151|LTR?|LTR? -54005 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 293-171 chr19 30351007 30351234 + 2 NA Intergenic Intergenic -21264 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 276-416 chr6 146391883 146392098 + 2 NA intron (NM_001278065, intron 7 of 9) LTR108a_Mam|LTR|ERVL -151843 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 499-121 chr2 79357667 79358044 + 2 NA Intergenic Intergenic 142989 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 387-97 chr13 58871892 58872221 + 2 NA Intergenic L1MB2|LINE|L1 -638939 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 364-397 chr6 151598968 151599234 + 2 NA intron (NM_025059, intron 9 of 10) L3|LINE|CR1 -91395 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 219-344 chr7 112961272 112961396 + 2 NA intron (NR_110162, intron 4 of 5) L1ME2|LINE|L1 -21459 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 592-92 chr2 166555815 166556330 + 2 NA Intergenic L3|LINE|CR1 -69101 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 282-238 chr2 176230214 176230437 + 2 NA Intergenic Intergenic -39117 NM_001319097 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 213-37 chr10 43952305 43952453 + 2 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 39977 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 173-110 chr5 60281488 60281604 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 91117 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 517-12 chr1 172622895 172623312 + 2 NA Intergenic MER4E|LTR|ERV1 -35905 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 330-421 chr5 57558012 57558180 + 2 NA Intergenic Intergenic -12246 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 524-200 chr5 61859944 61860290 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -124419 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 243-309 chr3 193836167 193836393 + 2 NA Intergenic AluSp|SINE|Alu 7729 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 285-353 chr5 123628618 123628807 + 2 NA Intergenic L1MA8|LINE|L1 83295 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 588-86 chr20 53159277 53159727 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -25781 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 235-202 chr20 51047213 51047390 + 2 NA Intergenic Intergenic -24194 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 258-200 chr2 126583199 126583390 + 2 NA Intergenic Intergenic -72641 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 351-81 chr11 118086628 118086817 + 2 NA intron (NM_001173552, intron 1 of 11) intron (NM_001173552, intron 1 of 11) 241 NM_001354434 100526771 Hs.627426 NM_001354434 SMIM35 TMPRSS4-AS1 small integral membrane protein 35 protein-coding 215-325 chr8 135116397 135116549 + 2 NA Intergenic L2b|LINE|L2 -117658 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 333-569 chr8 81910892 81911178 + 2 NA Intergenic Intergenic -68749 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 248-376 chr7 46719904 46720097 + 2 NA Intergenic Intergenic -22878 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 710-24 chr12 79764748 79765294 + 2 NA Intergenic L2a|LINE|L2 -73924 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 751-7 chr10 111673377 111673988 + 2 NA Intergenic L1MCa|LINE|L1 510083 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 311-24 chr1 159242750 159242920 + 2 NA Intergenic L1MA7|LINE|L1 37960 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 383-219 chr20 16714068 16714297 + 2 NA Intergenic Intergenic -15844 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 473-146 chr2 180494698 180495038 + 2 NA Intergenic L1PB4|LINE|L1 -197236 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 424-3 chr1 48987162 48987448 + 2 NA intron (NM_001323575, intron 5 of 12) L1MEc|LINE|L1 -210336 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 162-63 chr2 177129216 177129348 + 2 NA Intergenic L2c|LINE|L2 83129 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 123 chr1 32835550 32835632 + 2 NA intron (NR_135107, intron 5 of 6) L1MB2|LINE|L1 10278 NR_135106 64766 Hs.440880 NM_022753 ENSG00000116497 S100PBP S100PBPR S100P binding protein protein-coding 334-101 chr12 2125181 2125425 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 72018 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 539-144 chr3 90357501 90357920 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1250089 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 226-46 chr10 85933562 85933727 + 2 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 331144 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 308-199 chr18 46795067 46795265 + 2 NA Intergenic L2a|LINE|L2 -38113 NM_001307986 29906 Hs.465025 NM_013305 ENSG00000101638 ST8SIA5 SIAT8-E|SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 631-8 chr1 117781595 117782102 + 2 NA Intergenic Intergenic 147773 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 351-122 chr14 53503866 53504164 + 2 NA Intergenic MIRb|SINE|MIR 350661 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 195-18 chr10 15269124 15269238 + 2 NA intron (NM_001010924, intron 3 of 7) AluJb|SINE|Alu -100488 NM_001308295 9397 Hs.60339 NM_004808 ENSG00000152465 NMT2 - N-myristoyltransferase 2 protein-coding 282-23 chr1 203195783 203196001 + 2 NA Intergenic Intergenic -9188 NM_001276 1116 Hs.382202 NM_001276 ENSG00000133048 CHI3L1 ASRT7|CGP-39|GP-39|GP39|HC-gp39|HCGP-3P|YK-40|YKL-40|YKL40|YYL-40|hCGP-39 chitinase 3 like 1 protein-coding 436-146 chr2 155789079 155789337 + 2 NA Intergenic Intergenic 465723 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 213-198 chr4 41170298 41170499 + 2 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 44144 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 322-37 chr1 207411572 207411784 + 2 NA Intergenic AluJb|SINE|Alu -42622 NM_001006658 1380 Hs.445757 NM_001877 ENSG00000117322 CR2 C3DR|CD21|CR|CVID7|SLEB9 complement C3d receptor 2 protein-coding 252-273 chr3 117553955 117554161 + 2 NA Intergenic Intergenic 136867 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 303-207 chr2 57625584 57625764 + 2 NA Intergenic Intergenic -281977 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 358-95 chr12 46282417 46282610 + 2 NA Intergenic L1MA4|LINE|L1 -13470 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 321-225 chr17 745776 745980 + 2 NA exon (NM_015721, exon 2 of 2) exon (NM_015721, exon 2 of 2) 6386 NM_015721 50628 Hs.499620 NM_015721 ENSG00000179409 GEMIN4 HC56|HCAP1|HHRF-1|NEDMCR|p97 gem nuclear organelle associated protein 4 protein-coding 426-294 chr8 86496062 86496372 + 2 NA intron (NM_001286719, intron 2 of 8) L1PA14|LINE|L1 12469 NM_016033 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 674-74 chr5 29261419 29261915 + 2 NA Intergenic Intergenic 118164 NR_130777 101929660 Hs.171348 NR_130777 LINC02109 - long intergenic non-protein coding RNA 2109 ncRNA 501-180 chr3 192195678 192196073 + 2 NA intron (NM_004113, intron 4 of 5) L1MA8|LINE|L1 -42755 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 259-136 chr15 58796003 58796186 + 2 NA intron (NM_001040450, intron 2 of 8) L2|LINE|L2 24792 NM_001040450 54629 Hs.591122 NM_019092 ENSG00000128923 MINDY2 FAM63B MINDY lysine 48 deubiquitinase 2 protein-coding 467-72 chr13 76501860 76502308 + 2 NA Intergenic Intergenic 384321 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 338-578 chr9 16113493 16113812 + 2 NA Intergenic L1ME1|LINE|L1 139455 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 393-391 chr9 137373666 137374005 + 2 NA intron (NM_001286823, intron 3 of 7) intron (NM_001286823, intron 3 of 7) 49327 NR_104598 54932 Hs.495553 NM_017820 ENSG00000187609 EXD3 mut-7 exonuclease 3'-5' domain containing 3 protein-coding 265-143 chr17 54755807 54756017 + 2 NA Intergenic Intergenic -144779 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 548-111 chr2 38563035 38563411 + 2 NA TTS (NM_001142650) TTS (NM_001142650) 39705 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 429-166 chr2 175240496 175240712 + 2 NA Intergenic Intergenic -58894 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 416-128 chr15 60900356 60900706 + 2 NA intron (NM_134261, intron 1 of 10) MIRb|SINE|MIR 218962 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 532-102 chr18 70664873 70665297 + 2 NA Intergenic L1MA9|LINE|L1 -14131 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 295-3 chr1 13639528 13639751 + 2 NA Intergenic Intergenic 54179 NM_001006624 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 345-305 chr20 9789812 9790067 + 2 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 49137 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 254-283 chr4 112808358 112808545 + 2 NA intron (NM_001354269, intron 1 of 43) L3|LINE|CR1 -9546 NM_001354275 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 263-110 chr14 63340067 63340305 + 2 NA Intergenic L3|LINE|CR1 -21251 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 286-435 chr7 134795878 134796158 + 2 NA intron (NM_033157, intron 1 of 14) intron (NM_033157, intron 1 of 14) 16384 NM_004342 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 356-15 chr1 96165296 96165521 + 2 NA Intergenic Intergenic 173340 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 305-286 chr2 184871522 184871788 + 2 NA intron (NM_194250, intron 2 of 3) intron (NM_194250, intron 2 of 3) 273126 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 151-55 chr3 65913780 65913899 + 2 NA intron (NR_145422, intron 1 of 2) intron (NR_145422, intron 1 of 2) 20023 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 183-143 chr7 34698368 34698490 + 2 NA intron (NM_001300934, intron 2 of 6) intron (NM_001300934, intron 2 of 6) 40190 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 439-218 chr4 157425702 157426025 + 2 NA Intergenic Intergenic -146627 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 462-225 chr5 42449876 42450273 + 2 NA intron (NM_001242401, intron 1 of 10) L1PB1|LINE|L1 25093 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 336-355 chr22 39371746 39372040 + 2 NA intron (NM_145738, intron 1 of 3) MIRb|SINE|MIR 7723 NM_145738 9145 Hs.216226 NM_004711 ENSG00000100321 SYNGR1 - synaptogyrin 1 protein-coding 332-112 chr12 7314394 7314624 + 2 NA intron (NM_001080454, intron 3 of 12) (TAGA)n|Simple_repeat|Simple_repeat 10177 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 245-345 chr8 79271948 79272183 + 2 NA Intergenic L2a|LINE|L2 -60123 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 335-419 chr5 31055704 31055997 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -137836 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 358-355 chr5 2263679 2263877 + 2 NA Intergenic Intergenic 48423 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 210-79 chr14 82718926 82719127 + 2 NA Intergenic Intergenic 76394 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 187-71 chr18 7300004 7300159 + 2 NA Intergenic L1MB3|LINE|L1 68977 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 279-124 chr16 8530682 8530895 + 2 NA intron (NR_110736, intron 3 of 3) AluSz6|SINE|Alu 59050 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 332-479 chr7 39128435 39128736 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -115018 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 319-80 chr10 116640777 116641025 + 2 NA intron (NR_103727, intron 11 of 12) L1PA17|LINE|L1 19948 NM_005396 5408 Hs.423598 NM_005396 ENSG00000266200 PNLIPRP2 PLRP2 pancreatic lipase related protein 2 (gene/pseudogene) protein-coding 780-68 chr8 139192951 139193568 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -279218 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 204-131 chr19 36873735 36873929 + 2 NA intron (NM_001242476, intron 3 of 3) L1MA9|LINE|L1 22181 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 227-2 chr1 22376277 22376435 + 2 NA Intergenic MIRb|SINE|MIR -75495 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 259-147 chr16 17798452 17798692 + 2 NA Intergenic Intergenic -327612 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 327-380 chr4_GL000008v2_random 119 359 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat 177932 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 336-58 chr10 18219831 18220096 + 2 NA intron (NM_201593, intron 2 of 13) AluSx1|SINE|Alu -40759 NM_000724 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 164-40 chr15 87324431 87324530 + 2 NA Intergenic L1ME2|LINE|L1 -252449 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 390-287 chr5 27246305 27246550 + 2 NA Intergenic Intergenic -207841 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 489-252 chr8 65253125 65253449 + 2 NA Intergenic L1ME3Cz|LINE|L1 -72947 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 270-148 chr16 80049253 80049423 + 2 NA Intergenic Intergenic 254089 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 374-21 chr1 208780236 208780450 + 2 NA Intergenic MER34B|LTR|ERV1 51655 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 173-4 chr1 96315204 96315343 + 2 NA intron (NR_110693, intron 3 of 5) intron (NR_110693, intron 3 of 5) 58852 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 340-146 chr14 55813415 55813709 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -16888 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 305-447 chr5 116112471 116112700 + 2 NA intron (NM_001308080, intron 4 of 6) AluSc|SINE|Alu 27123 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 206-232 chr6 6962345 6962514 + 2 NA Intergenic Intergenic -145314 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 423-8 chr1 91307472 91307743 + 2 NA intron (NM_001017975, intron 30 of 38) AluJb|SINE|Alu 97230 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 384-182 chr2 143143611 143143898 + 2 NA intron (NM_018460, intron 1 of 13) intron (NM_018460, intron 1 of 13) 14335 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 292-46 chr10 63017305 63017499 + 2 NA Intergenic LTR16C|LTR|ERVL -115845 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 267-253 chr3 45317357 45317606 + 2 NA Intergenic Intergenic -71095 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 304-182 chr16 55027960 55028207 + 2 NA Intergenic L1PB2|LINE|L1 96884 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 292-55 chr10 85527837 85528037 + 2 NA Intergenic Intergenic -49794 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 195-236 chr8 61852931 61853113 + 2 NA Intergenic Intergenic -36817 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 366-405 chr7 38624081 38624371 + 2 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 7147 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 323-38 chr1 242632943 242633109 + 2 NA Intergenic Intergenic -108329 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 519-185 chr5 131927434 131927754 + 2 NA intron (NM_001303622, intron 5 of 12) L1MB1|LINE|L1 18069 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 249-335 chr5 62880576 62880777 + 2 NA Intergenic Intergenic 301857 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 525-176 chr4 66664391 66664779 + 2 NA Intergenic Intergenic 387761 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 214-217 chr3 126718143 126718349 + 2 NA intron (NM_032343, intron 1 of 7) intron (NM_032343, intron 1 of 7) 14006 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 319-367 chr4 54806714 54806894 + 2 NA Intergenic Intergenic 148876 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 295-386 chr5 123121616 123121824 + 2 NA intron (NM_001136239, intron 3 of 7) L1MC5a|LINE|L1 -31404 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 430-184 chr3 20973315 20973728 + 2 NA Intergenic L1M2|LINE|L1 -432205 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 318-237 chr19 36994178 36994416 + 2 NA intron (NM_001204839, intron 8 of 8) L1MB7|LINE|L1 77965 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 203-55 chr13 84339490 84339644 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 198965 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 253-115 chr13 47514241 47514404 + 2 NA Intergenic L1M1|LINE|L1 418300 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 370-385 chr6 10910132 10910409 + 2 NA intron (NM_001040274, intron 11 of 29) intron (NM_001040274, intron 11 of 29) 23218 NM_001040274 221711 Hs.729128 NM_194299 ENSG00000153157 SYCP2L C6orf177|NO145|dJ62D2.1 synaptonemal complex protein 2 like protein-coding 314-328 chr2 239452215 239452401 + 2 NA Intergenic L1ME3B|LINE|L1 50560 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 186-130 chr5 59232492 59232634 + 2 NA intron (NM_001165899, intron 3 of 16) L1MA4A|LINE|L1 43552 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 783-36 chr19 37514735 37515271 + 2 NA intron (NM_001013659, intron 2 of 7) L1M5|LINE|L1 -7916 NR_110723 101927720 Hs.18070 NR_110723 ENSG00000266916 ZNF793-AS1 - ZNF793 antisense RNA 1 (head to head) ncRNA 396-275 chr5 27632986 27633213 + 2 NA Intergenic HERVL-int|LTR|ERVL 160807 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 218-224 chr3 117594658 117594825 + 2 NA Intergenic Intergenic 96184 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 749-97 chr8 124210061 124210689 + 2 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 37023 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 581-30 chr12 14245986 14246532 + 2 NA Intergenic AluY|SINE|Alu -119373 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 200-243 chr6 125114153 125114302 + 2 NA Intergenic Intergenic -39546 NM_001003396 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 228-281 chr5 158463286 158463499 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger -53619 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 297-370 chr5 56692957 56693125 + 2 NA Intergenic Intergenic 79830 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 232-143 chr18 36109836 36109999 + 2 NA intron (NM_012319, intron 9 of 9) intron (NM_012319, intron 9 of 9) 19423 NM_012319 25800 Hs.79136 NM_012319 ENSG00000141424 SLC39A6 LIV-1|ZIP6 solute carrier family 39 member 6 protein-coding 578-185 chr8 130826387 130826773 + 2 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 214329 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 348-113 chr12 43681233 43681420 + 2 NA Intergenic Intergenic 77464 NM_031292 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 388-259 chr4 147469293 147469489 + 2 NA Intergenic L1PA4|LINE|L1 -11526 NM_001166055 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 432-226 chr5 94363775 94364094 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -252235 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 271-481 chr9 87259283 87259476 + 2 NA Intergenic Intergenic 110735 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 227-286 chr5 59400628 59400836 + 2 NA intron (NM_001165899, intron 3 of 16) L1PA3|LINE|L1 -43762 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 578-106 chr21 29882051 29882425 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 57758 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 363-131 chr14 44653871 44654203 + 2 NA Intergenic Intergenic 145089 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 483-188 chr4 81794820 81795137 + 2 NA Intergenic Intergenic -323071 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 333-554 chr8 8252777 8253072 + 2 NA Intergenic Intergenic 24354 NR_024362 286042 Hs.656318 NR_024361 ENSG00000173295 FAM86B3P - family with sequence similarity 86, member A pseudogene pseudo 345-207 chr17 71222501 71222745 + 2 NA Intergenic Intergenic -20444 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 419-114 chr17 55597762 55598080 + 2 NA Intergenic L1MB2|LINE|L1 124943 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 326-576 chr9 100276336 100276501 + 2 NA intron (NR_134606, intron 12 of 16) intron (NR_134606, intron 12 of 16) 76153 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 345-547 chr9 24587548 24587729 + 2 NA Intergenic L1MEg|LINE|L1 -41741 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 309-289 chr2 220191631 220191802 + 2 NA Intergenic Intergenic -285151 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 231-298 chr5 142533057 142533226 + 2 NA Intergenic L2b|LINE|L2 88193 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 173-58 chr18 70428712 70428818 + 2 NA Intergenic MIR|SINE|MIR -44174 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 288-61 chr11 21030664 21030899 + 2 NA intron (NM_201551, intron 12 of 18) L1ME4a|LINE|L1 361195 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 267-143 chr17 34450316 34450505 + 2 NA Intergenic L1ME3A|LINE|L1 -87177 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 323-374 chr4 71590258 71590508 + 2 NA Intergenic L1M3c|LINE|L1 193696 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 273-403 chr6 143331240 143331421 + 2 NA intron (NM_016108, intron 4 of 5) L1MB4|LINE|L1 111347 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 219-114 chr15 61529524 61529726 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -200293 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 501-190 chr4 63096747 63097076 + 2 NA Intergenic MER39|LTR|ERV1 -935146 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 298-35 chr10 19200173 19200430 + 2 NA intron (NM_001142308, intron 14 of 39) intron (NM_001142308, intron 14 of 39) 151500 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 204-254 chr6 121661769 121661872 + 2 NA Intergenic L1M5|LINE|L1 226174 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 411-315 chr9 123847631 123847950 + 2 NA intron (NM_001352968, intron 2 of 18) AluSz|SINE|Alu 82336 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 296-184 chr17 55851351 55851590 + 2 NA Intergenic Intergenic 100365 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 244-196 chr20 20138453 20138634 + 2 NA intron (NM_015585, intron 8 of 26) L1M1|LINE|L1 81897 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 299-371 chr5 63737599 63737872 + 2 NA Intergenic Intergenic 224557 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 352-466 chr6 92887999 92888257 + 2 NA Intergenic Intergenic 531431 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 571-116 chr3 144629129 144629589 + 2 NA Intergenic Intergenic 656278 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 222-267 chr4 62840311 62840495 + 2 NA Intergenic Intergenic -678638 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 281-238 chr2 179923401 179923609 + 2 NA Intergenic L1ME2|LINE|L1 -61893 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 340-427 chr5 2033558 2033763 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 146329 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 317-231 chr2 81787557 81787824 + 2 NA Intergenic Intergenic -320744 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 752-69 chr7 76000922 76001507 + 2 NA intron (NM_001317787, intron 5 of 6) intron (NM_001317787, intron 5 of 6) -6619 NM_001317803 83862 Hs.488835 NM_031925 ENSG00000189077 TMEM120A NET29|TMPIT transmembrane protein 120A protein-coding 209-267 chr5 163654321 163654510 + 2 NA Intergenic HAL1|LINE|L1 148796 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 278-30 chr10 37234487 37234675 + 2 NA Intergenic Intergenic -74605 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 374-71 chr12 65736214 65736529 + 2 NA Intergenic L1PB4|LINE|L1 -88089 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 308-549 chrX 77241320 77241539 + 2 NA Intergenic L1MA2|LINE|L1 -205960 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 292-3 chr1 21100325 21100537 + 2 NA intron (NM_001198802, intron 2 of 34) intron (NM_001198802, intron 2 of 34) 10952 NM_003760 8672 Hs.467084 NM_003760 ENSG00000075151 EIF4G3 eIF-4G 3|eIF4G 3|eIF4GII eukaryotic translation initiation factor 4 gamma 3 protein-coding 367-416 chr7 36513715 36513917 + 2 NA intron (NM_001177507, intron 19 of 19) MLT1E1A|LTR|ERVL-MaLR 86304 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 267-371 chr6 70429641 70429855 + 2 NA intron (NM_020819, intron 3 of 20) intron (NM_020819, intron 3 of 20) -15790 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 138-42 chr2 81880755 81880857 + 2 NA Intergenic Intergenic -413860 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 337-216 chr18 8873448 8873665 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger 156175 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 312-545 chr9 68660465 68660662 + 2 NA Intergenic L1MA5A|LINE|L1 -44677 NM_003558 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 214-211 chr3 82658155 82658367 + 2 NA Intergenic Intergenic 672119 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 283-390 chr6 39170276 39170475 + 2 NA Intergenic Intergenic -55189 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 280-33 chr1 209972823 209973025 + 2 NA intron (NM_001146261, intron 3 of 9) L1PA16|LINE|L1 34707 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 234-138 chr17 78609482 78609655 + 2 NA Intergenic Intergenic 22489 NR_110849 101928710 Hs.464224 NR_110848 ENSG00000267123 SCAT1 LINC02081|XLOC_012582 S-phase cancer associated transcript 1 ncRNA 301-322 chr4 81315693 81315919 + 2 NA Intergenic Charlie15a|DNA|hAT-Charlie -100584 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 328-185 chr15 92701539 92701789 + 2 NA Intergenic MER57B2|LTR|ERV1 -45889 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 132-31 chr15 100912687 100912805 + 2 NA TTS (NR_135828) TTS (NR_135828) 6537 NR_135827 101927751 Hs.659224 NR_135827 ENSG00000259583 LOC101927751 - uncharacterized LOC101927751 ncRNA 243-350 chr5 25987863 25988030 + 2 NA Intergenic Intergenic 796993 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 146-39 chr2 41101018 41101108 + 2 NA Intergenic MER34C2|LTR|ERV1 -588628 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 206-275 chr8 132366654 132366832 + 2 NA intron (NM_004519, intron 1 of 14) L1M5|LINE|L1 80519 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 296-310 chr3 150292874 150293140 + 2 NA intron (NR_110186, intron 2 of 3) intron (NR_110186, intron 2 of 3) 30740 NR_110186 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 547-177 chr5 35267351 35267889 + 2 NA Intergenic Intergenic -37133 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 293-114 chr14 53983926 53984188 + 2 NA Intergenic MIRb|SINE|MIR -27166 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 314-398 chr3 175595963 175596177 + 2 NA intron (NM_207015, intron 10 of 13) intron (NM_207015, intron 10 of 13) 180263 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 259-62 chr10 120596245 120596430 + 2 NA Intergenic Intergenic -1612 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 218-51 chr11 55618919 55619074 + 2 NA Intergenic L1PA15|LINE|L1 -14598 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 357-417 chr7 69000115 69000342 + 2 NA Intergenic MER4D|LTR|ERV1 597396 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 296-297 chr3 70864492 70864752 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 200302 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 480-251 chr6 55194853 55195220 + 2 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 88576 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 250-426 chr8 82769251 82769497 + 2 NA Intergenic Intergenic -142730 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 416-212 chr22 33486006 33486266 + 2 NA intron (NM_133642, intron 6 of 14) MIR3|SINE|MIR -49467 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 368-228 chr2 40036332 40036671 + 2 NA intron (NR_038441, intron 2 of 4) MLT1I|LTR|ERVL-MaLR 118867 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 546-128 chr20 54460263 54460626 + 2 NA Intergenic L1ME2|LINE|L1 -15149 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 324-441 chr5 156552505 156552759 + 2 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 225468 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 343-479 chr6 120058235 120058534 + 2 NA Intergenic L1PA17|LINE|L1 43205 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 329-514 chr6 160269088 160269351 + 2 NA Intergenic MER21-int|LTR|ERVL -10398 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 442-160 chr20 45620264 45620685 + 2 NA intron (NM_147198, intron 1 of 4) AluSz6|SINE|Alu -9265 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 309-46 chr10 41780913 41781171 + 2 NA Intergenic ALR/Alpha|Satellite|centr 587003 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 352-230 chr2 47707530 47707839 + 2 NA Intergenic L2c|LINE|L2 -75398 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 175-111 chr4 46898025 46898129 + 2 NA intron (NM_130902, intron 1 of 2) L2|LINE|L2 11168 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 277-89 chr12 24544462 24544684 + 2 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 17918 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 374-370 chr8 5029429 5029722 + 2 NA Intergenic L2a|LINE|L2 -34661 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 301-272 chr22 48913737 48913929 + 2 NA Intergenic L1ME2|LINE|L1 47063 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 204-239 chr5 119171611 119171794 + 2 NA intron (NM_001290321, intron 24 of 43) intron (NM_001290321, intron 24 of 43) 17065 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 330-40 chr1 203148712 203148885 + 2 NA intron (NM_001365066, intron 2 of 2) intron (NM_001365066, intron 2 of 2) 21072 NM_001365065 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 231-82 chr13 54139748 54139924 + 2 NA Intergenic Intergenic -6965 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 345-263 chr2 81181770 81181987 + 2 NA Intergenic Intergenic 285068 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 204-96 chr14 84915171 84915323 + 2 NA Intergenic MER31-int|LTR|ERV1 -356685 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 420-125 chr2 21955701 21956050 + 2 NA Intergenic Intergenic -245223 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 324-296 chr2 214932347 214932539 + 2 NA non-coding (NR_103740, exon 55 of 55) non-coding (NR_103740, exon 55 of 55) 85496 NR_145773 109617008 NR_145773 ENSG00000207274 SNORA70I - small nucleolar RNA, H/ACA box 70I snoRNA 261-255 chr3 128860536 128860716 + 2 NA TTS (NR_034179) TTS (NR_034179) 10915 NR_034179 653712 Hs.653243 NR_034179 ENSG00000231305 LOC653712 - intraflagellar transport 122 homolog (Chlamydomonas) pseudogene pseudo 481-90 chr14 61903865 61904207 + 2 NA intron (NM_001367661, intron 2 of 8) intron (NM_001367661, intron 2 of 8) -23659 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 444-168 chr4 32207173 32207533 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -143685 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 656-121 chr7 85925760 85926322 + 2 NA Intergenic Intergenic 504919 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 252-429 chr8 112414209 112414396 + 2 NA intron (NM_052900, intron 31 of 68) THE1D|LTR|ERVL-MaLR -229191 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 399-59 chr11 60675731 60675997 + 2 NA intron (NR_026946, intron 6 of 6) L1M5|LINE|L1 -23748 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 216-105 chr14 84316749 84316901 + 2 NA Intergenic L1MA4A|LINE|L1 -955107 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 197-130 chr3 21264514 21264705 + 2 NA Intergenic Intergenic -141117 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 312-147 chr14 57832696 57832962 + 2 NA intron (NM_001352012, intron 1 of 8) intron (NM_001352012, intron 1 of 8) 32170 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 189-150 chr4 107558182 107558365 + 2 NA Intergenic L1MC4a|LINE|L1 161961 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 156-17 chr11 22852172 22852290 + 2 NA intron (NM_001195637, intron 3 of 3) LTR8A|LTR|ERV1 8243 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 378-233 chr2 101497445 101497687 + 2 NA Intergenic AluJr|SINE|Alu -22454 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 655-126 chr8 116338060 116338526 + 2 NA Intergenic Intergenic -13234 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 162-59 chr2 142222679 142222793 + 2 NA Intergenic Intergenic -91035 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 543-4 chr1 59627662 59628045 + 2 NA intron (NM_001350794, intron 10 of 14) L1MC4a|LINE|L1 105443 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 649-65 chr21 24000464 24001027 + 2 NA Intergenic AluSc|SINE|Alu 320632 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 263-360 chr6 72128313 72128452 + 2 NA intron (NM_014989, intron 4 of 33) (CCCCT)n|Simple_repeat|Simple_repeat -84511 NM_001350429 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 240-318 chr4 67492421 67492582 + 2 NA intron (NM_001812, intron 15 of 18) intron (NM_001812, intron 15 of 18) 53002 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 213-4 chr1 68833609 68833777 + 2 NA Intergenic L1M4c|LINE|L1 -222205 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 426-3 chr1 33701420 33701788 + 2 NA intron (NM_052896, intron 22 of 69) intron (NM_052896, intron 22 of 69) -158871 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 451-83 chr15 100770333 100770684 + 2 NA Intergenic Intergenic -79244 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 354-276 chr22 47365080 47365361 + 2 NA intron (NR_144462, intron 2 of 3) L1MC2|LINE|L1 19649 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 324-440 chr5 152873246 152873548 + 2 NA intron (NR_109877, intron 2 of 4) L1MC4|LINE|L1 98952 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 123-12 chr12 652068 652151 + 2 NA intron (NM_016533, intron 1 of 3) L1MC1|LINE|L1 -8473 NM_001367996 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 284-388 chr7 103642161 103642350 + 2 NA intron (NM_005045, intron 16 of 64) intron (NM_005045, intron 16 of 64) -196048 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 207-286 chr8 65590140 65590289 + 2 NA Intergenic Intergenic -27548 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 297-282 chr22 48028074 48028292 + 2 NA Intergenic Intergenic -246181 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 410-258 chr6 40305214 40305576 + 2 NA Intergenic L2a|LINE|L2 50611 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 291-332 chr4 143099481 143099737 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 85252 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 485-266 chr7 49256576 49257013 + 2 NA Intergenic Intergenic 332247 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 395-202 chr21 27082829 27083217 + 2 NA Intergenic Intergenic -115935 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 297-58 chr10 85754362 85754609 + 2 NA intron (NM_017551, intron 8 of 15) L2a|LINE|L2 176754 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 268-118 chr14 59826126 59826343 + 2 NA intron (NM_021136, intron 1 of 8) MIR|SINE|MIR 44542 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 331-548 chr9 11959595 11959917 + 2 NA Intergenic Intergenic -733629 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 185-159 chr5 11103835 11104017 + 2 NA intron (NM_001288715, intron 13 of 20) intron (NM_001288715, intron 13 of 20) -342692 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 303-181 chr19 23935481 23935666 + 2 NA intron (NM_001348687, intron 3 of 3) intron (NM_001348687, intron 3 of 3) 20687 NM_001244038 730087 Hs.655305 NM_001190829 ENSG00000213967 ZNF726 ZNF92P3 zinc finger protein 726 protein-coding 265-342 chr6 129185440 129185667 + 2 NA intron (NM_000426, intron 10 of 64) MER106A|DNA|hAT-Charlie 302412 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 209-323 chr8 87086112 87086282 + 2 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 219782 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 223-94 chr14_GL000225v1_random 6588 6768 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 223-28 chr10 22158215 22158395 + 2 NA Intergenic Intergenic 51678 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 370-396 chr6 71810501 71810862 + 2 NA Intergenic L1PA4|LINE|L1 -76022 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 574-172 chr7 144254940 144255475 + 2 NA intron (NR_126022, intron 2 of 3) intron (NR_126022, intron 2 of 3) -3604 NR_002158 401428 Hs.490448 NR_002158 ENSG00000170356 OR2A20P OR2A20 olfactory receptor family 2 subfamily A member 20 pseudogene pseudo 377-142 chr15 98826639 98826984 + 2 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 42385 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 129-41 chr2 147376426 147376526 + 2 NA Intergenic L1MC4|LINE|L1 -468041 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 317-467 chr7 124223052 124223352 + 2 NA Intergenic Intergenic 128894 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 232-120 chr16 35447701 35447868 + 2 NA Intergenic Intergenic 32812 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 241-194 chr2 118445173 118445346 + 2 NA Intergenic L1ME1|LINE|L1 157707 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 334-33 chr1 178252943 178253127 + 2 NA intron (NM_170692, intron 1 of 17) MLT1C|LTR|ERVL-MaLR -88416 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 240-229 chr2 129445184 129445409 + 2 NA Intergenic Intergenic -171405 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 489-7 chr1 74268268 74268707 + 2 NA intron (NM_015978, intron 4 of 24) intron (NM_015978, intron 4 of 24) 33100 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 306-21 chr1 93125195 93125433 + 2 NA intron (NM_007358, intron 9 of 14) L3|LINE|CR1 46031 NM_007358 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 307-467 chr7 156137292 156137516 + 2 NA Intergenic Intergenic 174772 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 299-161 chr16 69289925 69290142 + 2 NA intron (NM_006750, intron 5 of 6) intron (NM_006750, intron 5 of 6) -21317 NM_013245 27183 Hs.128420 NM_013245 ENSG00000132612 VPS4A SKD1|SKD1A|SKD2|VPS4|VPS4-1 vacuolar protein sorting 4 homolog A protein-coding 656-117 chr7 33466438 33466989 + 2 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 337149 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 317-350 chr4 59005807 59006009 + 2 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) -7665 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 357-126 chr15 25225976 25226186 + 2 NA TTS (NR_003345) TTS (NR_003345) 878 NR_003345 100033804 NR_003345 ENSG00000200987 SNORD115-30 HBII-52-30 small nucleolar RNA, C/D box 115-30 snoRNA 369-213 chr2 123389540 123389842 + 2 NA Intergenic Intergenic -316210 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 542-216 chr8 48286605 48287035 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -264747 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 246-185 chr2 19096141 19096288 + 2 NA Intergenic L1MB7|LINE|L1 -69243 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 241-243 chr3 117233696 117233891 + 2 NA Intergenic Intergenic 312362 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 184-7 chr1 63457594 63457737 + 2 NA intron (NM_001347145, intron 4 of 7) intron (NM_001347145, intron 4 of 7) 65608 NM_014288 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 294-220 chr2 80774714 80774910 + 2 NA Intergenic Intergenic 461433 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 251-25 chr1 248156793 248156944 + 2 NA Intergenic Intergenic 11720 NM_001004690 127059 Hs.553580 NM_001004690 ENSG00000162727 OR2M5 OR2M5P olfactory receptor family 2 subfamily M member 5 protein-coding 303-219 chr2 125036480 125036710 + 2 NA Intergenic L1PB2|LINE|L1 1011308 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 296-457 chr8 50368027 50368222 + 2 NA intron (NR_135797, intron 2 of 20) MLT1-int|LTR|ERVL-MaLR 203993 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 487-114 chr18 1596332 1596663 + 2 NA Intergenic Intergenic -236868 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 244-66 chr12 16409393 16409589 + 2 NA Intergenic LTR40A1|LTR|ERVL 56074 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 410-341 chrX 85521661 85521921 + 2 NA Intergenic L1MA3|LINE|L1 -142126 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 365-273 chr3 189534531 189534755 + 2 NA Intergenic Intergenic -62103 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 508-17 chr1 237649210 237649671 + 2 NA intron (NM_001035, intron 49 of 104) intron (NM_001035, intron 49 of 104) 178321 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 780-58 chr6 155353042 155353630 + 2 NA Intergenic L1M3a|LINE|L1 -38852 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 270-111 chr14 63091118 63091309 + 2 NA Intergenic Intergenic -45755 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 1387-4 chr17 60963762 60964766 + 2 NA intron (NM_001330413, intron 14 of 25) L1MA4|LINE|L1 286413 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 321-160 chr14 25441256 25441444 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -391053 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 348-413 chr5 75846157 75846377 + 2 NA Intergenic AluJb|SINE|Alu -128830 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 381-116 chr15 92448625 92448981 + 2 NA intron (NM_001330416, intron 4 of 4) L3|LINE|CR1 22743 NR_126501 104613533 Hs.97584 NR_126501 ENSG00000259170 LOC104613533 - uncharacterized LOC104613533 ncRNA 302-129 chr14 61349446 61349604 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 28082 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 728-78 chr6 6089842 6090467 + 2 NA Intergenic MamRep1527|LTR|LTR -79180 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 222-134 chr17 33286926 33287107 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 5972 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 494-17 chr1 204265987 204266474 + 2 NA intron (NM_014935, intron 5 of 22) intron (NM_014935, intron 5 of 22) -52242 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 262-260 chr21 26606087 26606266 + 2 NA Intergenic L1MA3|LINE|L1 -32890 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 598-147 chr8 128402297 128402736 + 2 NA Intergenic Intergenic 162163 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 221-106 chr16 87132559 87132770 + 2 NA Intergenic Intergenic 74880 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 356-482 chr8 103420043 103420237 + 2 NA intron (NM_015420, intron 1 of 10) intron (NM_015420, intron 1 of 10) 4754 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 656-125 chr8 81861999 81862589 + 2 NA Intergenic L2|LINE|L2 -20008 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 296-63 chr10 111728832 111729094 + 2 NA Intergenic Intergenic 454802 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 357-109 chr14 38770229 38770420 + 2 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -112272 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 640-18 chr10 109422238 109422758 + 2 NA Intergenic MIRb|SINE|MIR 500748 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 288-255 chr3 34403708 34403896 + 2 NA Intergenic Intergenic 605172 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 504-212 chr5 50256292 50256651 + 2 NA Intergenic ALR/Alpha|Satellite|centr 184817 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 195-96 chr19 37081081 37081208 + 2 NA intron (NR_138039, intron 2 of 5) L1MEc|LINE|L1 2711 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 344-328 chr3 118324742 118325063 + 2 NA Intergenic L1MA9|LINE|L1 -316866 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 589-33 chr15 24985124 24985527 + 2 NA TTS (NR_001294) TTS (NR_001294) 225 NR_001294 347686 NR_001294 ENSG00000276610 SNORD64 HBII-13 small nucleolar RNA, C/D box 64 snoRNA 273-91 chr11 115587829 115588094 + 2 NA Intergenic MER61E|LTR|ERV1 -83546 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 246-246 chr3 390463 390647 + 2 NA intron (NM_001253388, intron 18 of 24) intron (NM_001253388, intron 18 of 24) -4760 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 116-13 chr16 88055504 88055587 + 2 NA intron (NM_001173539, intron 11 of 12) intron (NM_001173539, intron 11 of 12) 45440 NR_120310 400553 Hs.592071 NR_120310 ENSG00000205037 LOC400553 - uncharacterized LOC400553 ncRNA 143-80 chr7 125252352 125252447 + 2 NA intron (NR_110183, intron 1 of 3) intron (NR_110183, intron 1 of 3) 11892 NR_110182 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 501-270 chr8 128519585 128519948 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 44913 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 197-51 chr13 76076642 76076815 + 2 NA Intergenic L1M2|LINE|L1 -141596 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 357-60 chr11 28487340 28487675 + 2 NA Intergenic Intergenic -9959 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 457-258 chr8 87576724 87577007 + 2 NA Intergenic L1MEg|LINE|L1 297150 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 137-35 chr17 56514256 56514360 + 2 NA 3' UTR (NM_001365758, exon 21 of 21) 3' UTR (NM_001365758, exon 21 of 21) -79391 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 322-159 chr14 82457202 82457393 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -185335 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 348-12 chr1 94577330 94577570 + 2 NA Intergenic L1PA11|LINE|L1 33748 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 576-168 chr8 102008238 102008673 + 2 NA intron (NM_001040624, intron 3 of 7) MER34|LTR|ERV1 24023 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 239-366 chr7 25253676 25253874 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -25289 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 230-299 chr5 79379408 79379545 + 2 NA intron (NM_001277078, intron 5 of 5) (AT)n|Simple_repeat|Simple_repeat 134360 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 321-372 chr3 62586597 62586825 + 2 NA intron (NM_003716, intron 7 of 29) intron (NM_003716, intron 7 of 29) -213161 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 294-323 chr4 33312387 33312656 + 2 NA Intergenic Intergenic 727372 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 249-440 chr8 141914977 141915181 + 2 NA Intergenic L1ME3D|LINE|L1 -128766 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 486-77 chr14 59042806 59043199 + 2 NA Intergenic L1ME1|LINE|L1 -145665 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 320-426 chr5 24221472 24221668 + 2 NA Intergenic L1PBb|LINE|L1 270222 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 451-24 chr1 240011274 240011594 + 2 NA intron (NR_036695, intron 1 of 1) intron (NR_036695, intron 1 of 1) 3910 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 299-78 chr11 54803862 54804115 + 2 NA Intergenic ALR/Alpha|Satellite|centr 97156 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 196-245 chr8 35921276 35921414 + 2 NA Intergenic LTR40a|LTR|ERVL -211025 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 327-273 chr2 144727179 144727439 + 2 NA intron (NR_033870, intron 1 of 4) L1ME1|LINE|L1 59342 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 369 chr1 7361833 7362085 + 2 NA intron (NM_001349608, intron 4 of 21) intron (NM_001349608, intron 4 of 21) 27795 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 292-348 chr5 51397763 51397942 + 2 NA Intergenic Intergenic 14404 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 339-617 chr9 137499728 137499900 + 2 NA intron (NM_001098537, intron 16 of 34) intron (NM_001098537, intron 16 of 34) -40480 NM_001130969 26012 Hs.455336 NM_015537 ENSG00000165802 NSMF HH9|NELF NMDA receptor synaptonuclear signaling and neuronal migration factor protein-coding 413-270 chr6 148657888 148658167 + 2 NA Intergenic Intergenic -89003 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 333-136 chr13 96223623 96223912 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 132928 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 495-261 chr8 127395950 127396401 + 2 NA intron (NR_117100, intron 5 of 5) intron (NR_117100, intron 5 of 5) -4224 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 328-405 chr4 79772174 79772401 + 2 NA Intergenic L1PB1|LINE|L1 -55184 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 332-83 chr11 18720440 18720635 + 2 NA intron (NM_173588, intron 4 of 22) L2c|LINE|L2 5651 NM_173588 283284 Hs.434152 NM_173588 ENSG00000179057 IGSF22 IGFN2 immunoglobulin superfamily member 22 protein-coding 384-36 chr10 45639873 45640196 + 2 NA intron (NM_174890, intron 5 of 9) intron (NM_174890, intron 5 of 9) 32698 NM_001282905 93550 Hs.89029 NM_174890 ENSG00000172671 ZFAND4 ANUBL1 zinc finger AN1-type containing 4 protein-coding 149-47 chr19 33192304 33192442 + 2 NA Intergenic MER96B|DNA|hAT-Tip100 -1957 NM_002333 4037 Hs.515340 NM_002333 ENSG00000130881 LRP3 - LDL receptor related protein 3 protein-coding 436-204 chr4 42673649 42674002 + 2 NA Intergenic MIR|SINE|MIR -16720 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 550-135 chr20 45398863 45399235 + 2 NA intron (NR_003189, intron 3 of 5) L1MCa|LINE|L1 -6944 NM_001197139 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 520-278 chr7 45049270 45049658 + 2 NA intron (NM_001029835, intron 2 of 9) L1ME4b|LINE|L1 21830 NM_001029835 83605 Hs.148272 NM_031443 ENSG00000136280 CCM2 C7orf22|OSM|PP10187 CCM2 scaffold protein protein-coding 254-204 chr2 184548527 184548730 + 2 NA Intergenic Intergenic -49901 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 472-273 chr6 70072892 70073342 + 2 NA intron (NM_001858, intron 15 of 50) AluSq|SINE|Alu 206561 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 570-67 chr14 86319393 86319892 + 2 NA Intergenic Intergenic 384964 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 278-43 chr10 90557903 90558171 + 2 NA Intergenic L1ME3D|LINE|L1 -17232 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 239-22 chr1 247241462 247241625 + 2 NA Intergenic Intergenic -14529 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 621-75 chr3 29018008 29018425 + 2 NA Intergenic Intergenic 262723 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 448-47 chr11 27881166 27881439 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -159272 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 365-221 chr2 209480470 209480758 + 2 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 56567 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 433-250 chr6 131743258 131743585 + 2 NA intron (NR_133007, intron 23 of 23) MIR|SINE|MIR -32404 NM_001145659 643854 Hs.632613 NM_001145659 ENSG00000236761 CTAGE9 - CTAGE family member 9 protein-coding 329-109 chr12 5813851 5814162 + 2 NA intron (NM_001278596, intron 7 of 25) intron (NM_001278596, intron 7 of 25) 131253 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 250-394 chr7 28203427 28203616 + 2 NA intron (NR_034097, intron 2 of 3) L1MB7|LINE|L1 -22726 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 211-312 chr8 131791702 131791896 + 2 NA Intergenic Intergenic -112294 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 385-86 chr13 97836065 97836372 + 2 NA Intergenic L1PB3|LINE|L1 -117457 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 331-194 chr16 64899870 64900058 + 2 NA Intergenic Intergenic 222099 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 397-201 chr3 13984976 13985313 + 2 NA intron (NR_002223, intron 1 of 2) L1PA7|LINE|L1 47837 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 320-595 chr9 97296580 97296867 + 2 NA non-coding (NR_036526, exon 16 of 16) non-coding (NR_036526, exon 16 of 16) -10614 NM_001348010 100499483 Hs.435629 NM_020893 ENSG00000197816 CCDC180 C9orf174 coiled-coil domain containing 180 protein-coding 350-550 chr8 142281124 142281337 + 2 NA intron (NM_001366901, intron 11 of 13) intron (NM_001366901, intron 11 of 13) 82874 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 321-490 chr6 50683539 50683726 + 2 NA Intergenic L2a|LINE|L2 -29912 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 295-75 chr11 60681612 60681832 + 2 NA intron (NR_026946, intron 6 of 6) L1M4|LINE|L1 -17890 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 337-64 chr10 84920627 84920821 + 2 NA Intergenic Intergenic 278181 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 290-161 chr16 73258743 73258916 + 2 NA Intergenic L1ME3Cz|LINE|L1 -114382 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 469-205 chr4 156092512 156092914 + 2 NA Intergenic Intergenic -138847 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 241-115 chr14 70054289 70054467 + 2 NA intron (NR_104122, intron 2 of 5) intron (NR_104122, intron 2 of 5) 25839 NM_001130417 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 528-210 chr5 150853933 150854309 + 2 NA intron (NM_001346557, intron 2 of 3) L1M4|LINE|L1 7598 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 515-37 chr11 28847169 28847559 + 2 NA Intergenic Intergenic -369816 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 302-383 chr6 65356052 65356285 + 2 NA intron (NM_198283, intron 7 of 9) L1PB4|LINE|L1 54750 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 338-242 chr2 9785152 9785449 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -58142 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 259-13 chr1 91458314 91458534 + 2 NA Intergenic Intergenic -42423 NM_001134419 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 738-42 chr3 67340328 67340884 + 2 NA Intergenic L1PA16|LINE|L1 115142 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 308-10 chr1 66264415 66264653 + 2 NA intron (NM_001037340, intron 4 of 14) MIRb|SINE|MIR -67574 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 296-443 chr7 81308218 81308433 + 2 NA Intergenic Intergenic 253494 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 265-246 chr3 124435810 124436061 + 2 NA intron (NM_001322992, intron 17 of 32) L1M5|LINE|L1 61603 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 459-81 chr14 61194101 61194438 + 2 NA Intergenic L1MEg|LINE|L1 87069 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 409-76 chr14 60363649 60363966 + 2 NA Intergenic Intergenic 40611 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 124-32 chr17 58695257 58695332 + 2 NA TTS (NM_002876) TTS (NM_002876) 2692 NR_103872 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 138-45 chr2 212247321 212247445 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 178977 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 135-52 chr4 42410088 42410177 + 2 NA 3' UTR (NM_006095, exon 37 of 37) 3' UTR (NM_006095, exon 37 of 37) 12644 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 215-201 chr3 97443457 97443617 + 2 NA intron (NM_001278300, intron 2 of 12) intron (NM_001278300, intron 2 of 12) 3930 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 455-165 chr3 77364688 77365029 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 266846 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 430-256 chr5 166698401 166698711 + 2 NA Intergenic Intergenic 227814 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 235-39 chr10 51341470 51341650 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 41987 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 368-396 chr6 82572611 82572953 + 2 NA Intergenic MIR|SINE|MIR 208538 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 219-375 chr9 25113730 25113890 + 2 NA Intergenic Intergenic 565048 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 324-515 chr8 16725365 16725616 + 2 NA Intergenic Intergenic 276855 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 252-267 chr3 94399969 94400129 + 2 NA Intergenic Intergenic 336988 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 279-302 chr4 127842266 127842500 + 2 NA Intergenic AluJb|SINE|Alu -38510 NM_014264 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 353-59 chr10 56733325 56733670 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -372224 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 355-467 chr7 62977502 62977727 + 2 NA Intergenic ALR/Alpha|Satellite|centr 326442 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 348-457 chr6 82574756 82574967 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 210617 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 619-15 chr1 234092571 234093134 + 2 NA intron (NM_173508, intron 2 of 7) AluJo|SINE|Alu -121359 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 314-430 chr4 77552919 77553104 + 2 NA intron (NM_006419, intron 1 of 4) L1PA15-16|LINE|L1 41258 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 507-83 chr14 62550633 62550992 + 2 NA Intergenic L1PA13|LINE|L1 -410839 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 446-103 chr14 82491313 82491590 + 2 NA Intergenic Intergenic -151181 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 384-388 chr8 138552339 138552543 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -54711 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 242-314 chr5 106591517 106591722 + 2 NA Intergenic L1ME1|LINE|L1 419395 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 294-240 chr2 159470171 159470377 + 2 NA intron (NM_001329858, intron 3 of 36) L1MEb|LINE|L1 -145020 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 141-56 chr3 83364174 83364255 + 2 NA Intergenic Intergenic 1378072 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 557-171 chr6 74658407 74658800 + 2 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 470179 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 521-128 chr2 163923426 163923779 + 2 NA Intergenic L1ME1|LINE|L1 -187594 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 494-213 chr4 160726234 160726574 + 2 NA Intergenic Intergenic -948620 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 296-191 chr18 6091328 6091556 + 2 NA intron (NM_001365766, intron 15 of 16) intron (NM_001365766, intron 15 of 16) -165302 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 255-416 chr8 63877499 63877654 + 2 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 108146 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 343-51 chr10 54976315 54976591 + 2 NA intron (NM_001354404, intron 3 of 34) LTR8B|LTR|ERV1 -175162 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 257-164 chr19 23972349 23972524 + 2 NA Intergenic Intergenic -14483 NR_149007 100505851 Hs.190888 NR_149007 LOC100505851 - uncharacterized LOC100505851 ncRNA 281-221 chr2 118868804 118869050 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -20744 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 303-88 chr12 24095210 24095421 + 2 NA intron (NM_152989, intron 4 of 17) L3|LINE|CR1 -117106 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 297-478 chr8 99919765 99919931 + 2 NA Intergenic L1MC4|LINE|L1 -26141 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 296-30 chr10 5300869 5301056 + 2 NA Intergenic Intergenic -29726 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 228-102 chr14 78544906 78545077 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 141272 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 207-282 chr8 11364000 11364152 + 2 NA intron (NR_001578, intron 6 of 8) Charlie1b|DNA|hAT-Charlie -4326 NR_026814 83656 Hs.583896 NM_054017 ENSG00000184608 FAM167A-AS1 C8orf12 FAM167A antisense RNA 1 ncRNA 217-100 chr13 47561097 47561262 + 2 NA Intergenic Intergenic 371443 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 459-46 chr11 5865331 5865660 + 2 NA Intergenic L1PA16|LINE|L1 -7793 NM_001005168 390079 Hs.553738 NM_001005168 ENSG00000183269 OR52E8 OR11-54 olfactory receptor family 52 subfamily E member 8 protein-coding 373-86 chr12 18513289 18513496 + 2 NA intron (NM_001288774, intron 24 of 32) L1MA7|LINE|L1 224117 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 490-172 chr21 30608795 30609101 + 2 NA Intergenic L1M4b|LINE|L1 4956 NM_181602 337966 Hs.194301 NM_181602 ENSG00000184724 KRTAP6-1 C21orf103|KAP6.1 keratin associated protein 6-1 protein-coding 506-179 chr3 42915245 42915672 + 2 NA 3' UTR (NM_001134656, exon 4 of 4) 3' UTR (NM_001134656, exon 4 of 4) 9316 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 454-14 chr1 218874600 218874945 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 43739 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 313-210 chr18 4938111 4938370 + 2 NA Intergenic LTR16E1|LTR|ERVL -142942 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 535-95 chr16 24382932 24383272 + 2 NA Intergenic Intergenic 127549 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 385-144 chr18 13200244 13200611 + 2 NA Intergenic L1MB3|LINE|L1 -18333 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 364-226 chr2 133261241 133261533 + 2 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -4808 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 318-266 chr2 65733120 65733321 + 2 NA Intergenic Intergenic -300621 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 299-254 chr20 16205057 16205274 + 2 NA Intergenic Intergenic -219283 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 303-201 chr2 50124834 50125122 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -150775 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 438-148 chr20 48273363 48273695 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -86382 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 299-448 chr8 81559071 81559296 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 -27793 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 362-328 chr5 2676868 2677181 + 2 NA Intergenic Intergenic -35567 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 461-28 chr10 31924368 31924642 + 2 NA intron (NM_001270696, intron 1 of 17) L1ME1|LINE|L1 4326 NM_001270696 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 233-58 chr11 63502104 63502273 + 2 NA Intergenic Intergenic -3896 NM_001142536 85329 Hs.502774 NM_033101 ENSG00000133317 LGALS12 GAL12|GRIP1 galectin 12 protein-coding 334-412 chr5 26052565 26052823 + 2 NA Intergenic Intergenic 861741 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 428-87 chr16 74237595 74237844 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -22198 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 314-465 chr5 67800852 67801041 + 2 NA non-coding (NR_130779, exon 3 of 3) non-coding (NR_130779, exon 3 of 3) 7733 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 137-23 chr14 48740610 48740707 + 2 NA Intergenic Intergenic 845722 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 331-305 chr2 222495329 222495563 + 2 NA intron (NM_152386, intron 2 of 4) intron (NM_152386, intron 2 of 4) 70903 NM_001320833 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 367-335 chr4 156608027 156608333 + 2 NA Intergenic Intergenic 363619 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 334-569 chr9 90625631 90625803 + 2 NA intron (NM_017594, intron 1 of 1) L1M4|LINE|L1 17107 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 517-113 chr18 70154943 70155400 + 2 NA intron (NM_001318520, intron 14 of 47) intron (NM_001318520, intron 14 of 47) 50516 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 360-412 chr6 79993918 79994201 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -10546 NM_001166691 7272 Hs.169840 NM_003318 ENSG00000112742 TTK CT96|ESK|MPH1|MPS1|MPS1L1|PYT TTK protein kinase protein-coding 298-253 chr20 19496950 19497227 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -212492 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 438-289 chr8 144560063 144560311 + 2 NA intron (NM_025251, intron 2 of 10) AluSz|SINE|Alu -31076 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 208-126 chr2 135753898 135754085 + 2 NA intron (NM_014607, intron 3 of 12) intron (NM_014607, intron 3 of 12) -11347 NR_163478 107985946 Hs.591242 NM_001365239 LOC107985946 - uncharacterized LOC107985946 ncRNA 541-198 chr6 4570552 4570902 + 2 NA Intergenic L1MEi|LINE|L1 -39838 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 692-93 chr7 91473343 91473976 + 2 NA Intergenic L1M4|LINE|L1 209226 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 172-46 chr17 68887728 68887867 + 2 NA intron (NM_001288985, intron 24 of 39) intron (NM_001288985, intron 24 of 39) 67595 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 313-3 chr1 37817338 37817591 + 2 NA exon (NM_005955, exon 10 of 11) exon (NM_005955, exon 10 of 11) -9256 NM_024640 79693 Hs.301564 NM_024640 ENSG00000196449 YRDC DRIP3|IRIP|SUA5 yrdC N6-threonylcarbamoyltransferase domain containing protein-coding 279-166 chr2 31108969 31109218 + 2 NA intron (NM_001329095, intron 1 of 15) intron (NM_001329095, intron 1 of 15) 20547 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 471-282 chr9 35895340 35895652 + 2 NA Intergenic AluSx|SINE|Alu -10706 NM_001039792 646962 Hs.208081 NM_001039792 ENSG00000196196 HRCT1 LGLL338|PRO537|UNQ338 histidine rich carboxyl terminus 1 protein-coding 329-414 chr4 87255127 87255344 + 2 NA Intergenic Intergenic -34617 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 443-235 chr5 8888607 8888995 + 2 NA Intergenic Intergenic 49069 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 210-50 chr11 100736085 100736268 + 2 NA intron (NM_001367945, intron 1 of 25) intron (NM_001367945, intron 1 of 25) -48221 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 506-111 chr17 73040450 73040750 + 2 NA intron (NM_001352692, intron 3 of 9) L1MD3|LINE|L1 52088 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 142-45 chr2 238672968 238673051 + 2 NA Intergenic L1ME3|LINE|L1 -117510 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 301-276 chr3 25148122 25148326 + 2 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) -192578 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 325-272 chr2 105661159 105661413 + 2 NA Intergenic L1ME2|LINE|L1 -50727 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 288-53 chr10 61547009 61547249 + 2 NA Intergenic Intergenic 67088 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 368-210 chr18 65470471 65470702 + 2 NA Intergenic Intergenic -279666 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 315-521 chrX 11619365 11619545 + 2 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) 46465 NM_006125 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 692-74 chr4 153163869 153164438 + 2 NA intron (NM_001130067, intron 1 of 11) AluJr4|SINE|Alu 11075 NM_001130067 23321 Hs.435711 NM_015271 ENSG00000109654 TRIM2 CMT2R|RNF86 tripartite motif containing 2 protein-coding 473-77 chr14 36530040 36530363 + 2 NA Intergenic L1MEc|LINE|L1 -9969 NM_001079668 7080 Hs.94367 NM_003317 ENSG00000136352 NKX2-1 BCH|BHC|NK-2|NKX2.1|NKX2A|NMTC1|T/EBP|TEBP|TITF1|TTF-1|TTF1 NK2 homeobox 1 protein-coding 353-228 chr19 58064982 58065182 + 2 NA intron (NM_001164529, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 5800 NM_003436 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 317-132 chr13 104642921 104643173 + 2 NA Intergenic Intergenic -822820 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 178-22 chr10 92182358 92182522 + 2 NA intron (NM_001178137, intron 3 of 9) intron (NM_001178137, intron 3 of 9) 60839 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 528-63 chr12 58770221 58770671 + 2 NA intron (NR_120452, intron 1 of 7) L1PREC2|LINE|L1 11270 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 544-20 chr1 222891335 222891740 + 2 NA intron (NM_032890, intron 1 of 9) L2c|LINE|L2 -36887 NM_001369594 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 254-292 chr4_GL000008v2_random 1330 1578 + 2 NA Intergenic Intergenic 176717 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 411-243 chr5 164867290 164867561 + 2 NA Intergenic Intergenic 397146 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 338-523 chr8 8573490 8573714 + 2 NA Intergenic Intergenic -128335 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 354-411 chr6 147018700 147018996 + 2 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -140077 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 234-405 chr9 122729412 122729595 + 2 NA Intergenic L1MEf|LINE|L1 5513 NM_001005235 254973 Hs.626838 NM_001005235 ENSG00000136939 OR1L4 OR1L5|OR9-29|OR9-E|OST046 olfactory receptor family 1 subfamily L member 4 protein-coding 156-96 chr6 138557015 138557153 + 2 NA intron (NM_020464, intron 1 of 6) intron (NM_020464, intron 1 of 6) 15485 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 279-229 chr21 14606856 14607087 + 2 NA intron (NM_001256579, intron 4 of 6) intron (NM_001256579, intron 4 of 6) -23569 NM_001256370 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 348-334 chr3 182932385 182932633 + 2 NA Intergenic L1M4|LINE|L1 48029 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 305-225 chr19 11953719 11953954 + 2 NA Intergenic Intergenic -11204 NM_001367172 284390 Hs.646386 NM_001012753 ENSG00000197054 ZNF763 ZNF|ZNF440L zinc finger protein 763 protein-coding 726-59 chr5 38318794 38319426 + 2 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) -28124 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 215-81 chr14 47489994 47490155 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -146828 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 538-117 chr2 121670392 121670805 + 2 NA intron (NR_037857, intron 2 of 3) L1PBa|LINE|L1 20609 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 323-233 chr2 28797972 28798184 + 2 NA intron (NM_206876, intron 8 of 8) intron (NM_206876, intron 8 of 8) -12756 NM_182756 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 158-27 chr14 39061350 39061487 + 2 NA intron (NM_006364, intron 13 of 19) intron (NM_006364, intron 13 of 19) -41722 NR_146545 105370458 NR_146545 ENSG00000258651 SEC23A-AS1 - SEC23A antisense RNA 1 ncRNA 426-267 chr7 36008199 36008567 + 2 NA Intergenic AluYb8|SINE|Alu -86927 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 322-326 chr3 63711297 63711468 + 2 NA Intergenic MIR|SINE|MIR 58707 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 466-120 chr2 22327034 22327357 + 2 NA Intergenic L2a|LINE|L2 -209284 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 244-127 chr17 12942550 12942730 + 2 NA intron (NM_001321164, intron 8 of 20) intron (NM_001321164, intron 8 of 20) -25298 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 162-76 chr21 31463119 31463215 + 2 NA intron (NM_001353691, intron 2 of 29) intron (NM_001353691, intron 2 of 29) 95920 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 196-14 chr1 115241302 115241471 + 2 NA Intergenic L3|LINE|CR1 -41648 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 126-31 chr19 24252219 24252326 + 2 NA Intergenic ALR/Alpha|Satellite|centr -88825 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 414-283 chr6 48821202 48821572 + 2 NA Intergenic AluJr|SINE|Alu 641866 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 159-41 chr2 49338303 49338446 + 2 NA Intergenic Intergenic -183847 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 234-27 chr1 247917523 247917656 + 2 NA Intergenic Intergenic -3429 NM_001005522 343172 Hs.521114 NM_001005522 ENSG00000177462 OR2T8 OR2T8P olfactory receptor family 2 subfamily T member 8 protein-coding 449-80 chr14 69955679 69955973 + 2 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -22307 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 603-62 chr17 34054963 34055399 + 2 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 101625 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 254-168 chr18 64377754 64377937 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -117790 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 228-18 chr1 147880955 147881123 + 2 NA Intergenic L1ME1|LINE|L1 -21756 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 671-31 chr14 61176209 61176764 + 2 NA Intergenic Intergenic 104852 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 589-19 chr11 104448074 104448606 + 2 NA Intergenic (AATAT)n|Simple_repeat|Simple_repeat 160962 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 372-356 chr4 43453999 43454297 + 2 NA Intergenic Intergenic 38395 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 254-19 chr1 187110427 187110677 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 17710 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 303-170 chr17 80304677 80304846 + 2 NA intron (NM_020954, intron 11 of 16) L1MB3|LINE|L1 43909 NM_001256071 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 233-205 chr20 31401735 31401908 + 2 NA Intergenic L2a|LINE|L2 4394 NM_001011878 245934 Hs.272294 NM_001011878 ENSG00000204548 DEFB121 DEFB21|ESC42RELC defensin beta 121 protein-coding 182-178 chr9 74017791 74017904 + 2 NA Intergenic L1MA3|LINE|L1 -353684 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 345-293 chr2 165819490 165819742 + 2 NA Intergenic L1ME4b|LINE|L1 -25369 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 220-133 chr17 61772281 61772475 + 2 NA intron (NM_032043, intron 14 of 19) L1MB4|LINE|L1 91181 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 193-50 chr12 129518296 129518452 + 2 NA intron (NM_133448, intron 3 of 8) L2b|LINE|L2 309773 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 263-261 chr3 98120665 98120874 + 2 NA Intergenic L1MEc|LINE|L1 -11929 NM_001005338 26341 Hs.537383 NM_001005338 ENSG00000231192 OR5H1 HSHTPCRX14|HTPCRX14 olfactory receptor family 5 subfamily H member 1 protein-coding 159-62 chr4 23030250 23030359 + 2 NA Intergenic Intergenic 316215 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 386-147 chr19 29187865 29188153 + 2 NA Intergenic Intergenic 25142 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 423-94 chr16 24154721 24155074 + 2 NA intron (NM_002738, intron 10 of 16) intron (NM_002738, intron 10 of 16) -48219 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 174-75 chr20 32793839 32793969 + 2 NA intron (NM_006892, intron 10 of 22) intron (NM_006892, intron 10 of 22) 14052 NM_175850 1789 Hs.643024 NM_006892 ENSG00000088305 DNMT3B ICF|ICF1|M.HsaIIIB DNA methyltransferase 3 beta protein-coding 312-67 chr10 128646228 128646425 + 2 NA Intergenic Intergenic -266507 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 345-478 chr6 161776595 161776883 + 2 NA intron (NM_004562, intron 7 of 11) MIRb|SINE|MIR 305762 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 396-241 chr3 189338404 189338776 + 2 NA Intergenic Intergenic -97996 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 173-61 chr19 37812227 37812367 + 2 NA Intergenic LTR42|LTR|ERVL -5114 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 261-327 chr6 12304886 12305078 + 2 NA Intergenic Intergenic 14621 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 338-506 chr7 62932838 62933032 + 2 NA Intergenic ALR/Alpha|Satellite|centr 371121 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 234-248 chr3 98430358 98430515 + 2 NA Intergenic L1M2|LINE|L1 -39044 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 299-169 chr17 35340533 35340776 + 2 NA Intergenic L1MA9|LINE|L1 32967 NM_001104590 91607 Hs.745059 NM_152270 ENSG00000172716 SLFN11 SLFN8/9 schlafen family member 11 protein-coding 349-350 chr3 178437860 178438119 + 2 NA intron (NR_046786, intron 1 of 2) intron (NR_046786, intron 1 of 2) 18788 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 408-350 chr8 141846168 141846518 + 2 NA Intergenic HAL1ME|LINE|L1 -60030 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 587-107 chr3 90362475 90362903 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1255068 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 296-309 chr3 145866737 145866949 + 2 NA Intergenic Intergenic 202342 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 393-135 chr17 71075123 71075349 + 2 NA Intergenic L2b|LINE|L2 126943 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 472-286 chr6 145436143 145436536 + 2 NA Intergenic L1MB7|LINE|L1 250538 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 439-100 chr15 77653534 77653950 + 2 NA intron (NM_001301195, intron 3 of 3) intron (NM_001301195, intron 3 of 3) -6309 NR_120362 101929478 Hs.569510 NR_120361 ENSG00000259281 LINGO1-AS2 - LINGO1 antisense RNA 2 ncRNA 331-490 chr7 31982251 31982575 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 87994 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 519-146 chr3 66343381 66343761 + 2 NA intron (NR_028475, intron 5 of 9) intron (NR_028475, intron 5 of 9) 122568 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 330-394 chr4 170885588 170885866 + 2 NA Intergenic Intergenic -141992 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 507-274 chr9 72276833 72277255 + 2 NA Intergenic Intergenic -28392 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 391-88 chr13 79015484 79015698 + 2 NA Intergenic L1PA16|LINE|L1 -175541 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 227-114 chr15 25586638 25586762 + 2 NA Intergenic L1MD2|LINE|L1 -147644 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 254-231 chr21 26350075 26350240 + 2 NA Intergenic Intergenic -43478 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 372-338 chr3 139711482 139711805 + 2 NA Intergenic (TTTTGAT)n|Simple_repeat|Simple_repeat -33593 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 552-189 chr6 109592838 109593200 + 2 NA intron (NM_001145128, intron 17 of 40) L1PA11|LINE|L1 98193 NR_138057 221264 Hs.205144 NM_145025 ENSG00000155085 AK9 AK 9|AKD1|AKD2|C6orf199|C6orf224|dJ70A9.1 adenylate kinase 9 protein-coding 310-395 chr5 34542558 34542788 + 2 NA Intergenic Intergenic -113655 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 534-113 chr2 72328375 72328734 + 2 NA intron (NR_135773, intron 19 of 21) L2a|LINE|L2 -180692 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 265-5 chr1 53785217 53785461 + 2 NA intron (NR_033142, intron 15 of 16) intron (NR_033142, intron 15 of 16) -46175 NM_001367484 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 268-309 chr5 60470857 60471108 + 2 NA intron (NM_001364599, intron 1 of 16) Tigger1|DNA|TcMar-Tigger -16731 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 432-282 chr8 33233047 33233311 + 2 NA Intergenic Intergenic 239967 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 205-112 chr16 72870780 72870913 + 2 NA intron (NM_001164766, intron 3 of 8) L1MC4|LINE|L1 177282 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 416-18 chr1 192281670 192282054 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -35130 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 403-267 chr6 45147661 45148049 + 2 NA intron (NM_001350325, intron 2 of 10) A-rich|Low_complexity|Low_complexity 49915 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 466-103 chr17 71105909 71106259 + 2 NA intron (NR_104152, intron 3 of 3) L1PA16|LINE|L1 96095 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 855-30 chr2 184527196 184527754 + 2 NA Intergenic MER57-int|LTR|ERV1 -71054 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 587-39 chr12 87179378 87179885 + 2 NA Intergenic L1ME3D|LINE|L1 -151108 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 330-50 chr10 20078757 20078941 + 2 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 262417 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 264-374 chr6 155379827 155380003 + 2 NA Intergenic Intergenic -65431 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 315-247 chr2 100327636 100327823 + 2 NA Intergenic L1MC5|LINE|L1 -4996 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 335-340 chr3 28273253 28273484 + 2 NA intron (NM_182523, intron 2 of 3) L1PA10|LINE|L1 31749 NM_001331186 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 338-541 chr8 87637451 87637702 + 2 NA Intergenic Intergenic 236439 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 113-10 chr11 112097732 112097843 + 2 NA Intergenic L2c|LINE|L2 10914 NM_001276504 6392 Hs.356270 NM_003002 ENSG00000204370 SDHD CBT1|CII-4|CWS3|PGL|PGL1|QPs3|SDH4|cybS succinate dehydrogenase complex subunit D protein-coding 222-100 chr13 77793496 77793627 + 2 NA Intergenic L1PA16|LINE|L1 -25376 NR_103853 100505518 Hs.742215 NR_103853 EDNRB-AS1 - EDNRB antisense RNA 1 ncRNA 354-429 chr7 47078130 47078373 + 2 NA Intergenic L1MB7|LINE|L1 -381129 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 358-418 chr6 151217581 151217847 + 2 NA intron (NR_125868, intron 1 of 2) AluSx|SINE|Alu 10743 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 345-128 chr12 130652219 130652404 + 2 NA intron (NM_001351226, intron 1 of 21) MER58A|DNA|hAT-Charlie -18391 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 316-491 chr6 129137852 129138106 + 2 NA intron (NM_000426, intron 4 of 64) L2b|LINE|L2 254838 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 282-152 chr15 98250435 98250681 + 2 NA Intergenic Intergenic 81000 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 328-513 chr6 143581978 143582235 + 2 NA Intergenic L1MEd|LINE|L1 -12767 NR_027113 285740 Hs.432656 NR_027113 ENSG00000235740 PHACTR2-AS1 - PHACTR2 antisense RNA 1 ncRNA 239-292 chr4 156673349 156673511 + 2 NA Intergenic Intergenic 298369 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 250-239 chr20 31057250 31057419 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -200330 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 242-103 chr14 59936718 59936897 + 2 NA intron (NR_075071, intron 6 of 32) intron (NR_075071, intron 6 of 32) 17094 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 301-202 chr2 57774145 57774441 + 2 NA Intergenic Intergenic -133358 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 286-203 chr2 56931313 56931582 + 2 NA Intergenic Intergenic -745677 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 188-94 chr2 55971908 55972040 + 2 NA intron (NR_126406, intron 2 of 2) L2a|LINE|L2 11102 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 223-220 chr3 105561394 105561523 + 2 NA intron (NM_001243280, intron 13 of 14) L1ME2|LINE|L1 194549 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 312-465 chr6 164038453 164038746 + 2 NA Intergenic AluSx1|SINE|Alu -367115 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 222-146 chr18 42640343 42640491 + 2 NA intron (NR_046174, intron 7 of 9) intron (NR_046174, intron 7 of 9) 453749 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 267-333 chr5 77796758 77796906 + 2 NA Intergenic L1MEf|LINE|L1 -20471 NM_004607 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 750-37 chr2 132765627 132766125 + 2 NA intron (NM_207481, intron 14 of 17) MLT1J|LTR|ERVL-MaLR -94350 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 206-170 chr3 164479949 164480127 + 2 NA Intergenic Intergenic -308482 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 227-117 chr15 61892723 61892890 + 2 NA intron (NM_001018088, intron 66 of 81) L1MA4|LINE|L1 162888 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 325-55 chr10 36141694 36142015 + 2 NA Intergenic Intergenic 363552 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 405-80 chr14 27326793 27327186 + 2 NA intron (NR_148991, intron 2 of 2) L1MC1|LINE|L1 -285599 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 249-84 chr12 12332159 12332363 + 2 NA intron (NM_001363613, intron 4 of 4) intron (NM_001363613, intron 4 of 4) 17981 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 527-27 chr10 54256570 54257000 + 2 NA intron (NM_001354411, intron 8 of 34) L2c|LINE|L2 -229445 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 461-84 chr15 46167025 46167440 + 2 NA Intergenic Intergenic 462037 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 358-319 chr4 489588 489803 + 2 NA intron (NM_133474, intron 1 of 2) MER33|DNA|hAT-Charlie 9461 NM_133474 170960 Hs.428360 NM_133474 ENSG00000182903 ZNF721 - zinc finger protein 721 protein-coding 381-278 chr4 96540389 96540680 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 229831 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 242-216 chr20 52557152 52557313 + 2 NA Intergenic L1MA5A|LINE|L1 -63606 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 318-18 chr1 78625860 78626039 + 2 NA intron (NM_006820, intron 1 of 8) L1MEg|LINE|L1 5501 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 272-195 chr2 71093649 71093857 + 2 NA Intergenic HAL1|LINE|L1 25105 NM_001365466 55577 Hs.7036 NM_017567 ENSG00000124357 NAGK GNK|HSA242910 N-acetylglucosamine kinase protein-coding 534-194 chr5 27056320 27056702 + 2 NA Intergenic Intergenic -17925 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 320-454 chr5 110019029 110019241 + 2 NA Intergenic L1PREC2|LINE|L1 135953 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 185-11 chr1 179407151 179407280 + 2 NA intron (NR_073544, intron 11 of 25) L1M2|LINE|L1 41171 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 591-76 chr2 128458184 128458628 + 2 NA Intergenic Intergenic -139538 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 237-402 chr9 30056669 30056840 + 2 NA Intergenic Intergenic 351700 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 352-26 chr1 206944571 206944880 + 2 NA intron (NM_002644, intron 1 of 10) intron (NM_002644, intron 1 of 10) 1741 NM_002644 5284 Hs.497589 NM_002644 ENSG00000162896 PIGR - polymeric immunoglobulin receptor protein-coding 295-426 chr7 3847936 3848160 + 2 NA intron (NM_152744, intron 5 of 44) Charlie2b|DNA|hAT-Charlie -281637 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 306-190 chr17 34139218 34139476 + 2 NA intron (NM_001094, intron 1 of 9) L1MC5a|LINE|L1 17459 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 253 chr1 10339123 10339347 + 2 NA intron (NM_001365951, intron 31 of 48) L2c|LINE|L2 40269 NR_104080 101954271 NR_104080 ENSG00000207507 RNU6-9 U6-9 RNA, U6 small nuclear 9 snRNA 236-162 chr2 34211107 34211323 + 2 NA intron (NR_126403, intron 4 of 5) L1PA13|LINE|L1 143989 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 284-439 chr9 32675191 32675432 + 2 NA Intergenic Intergenic -39642 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 230-262 chr4 58302970 58303112 + 2 NA Intergenic Intergenic 233287 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 343-134 chr14 43848262 43848482 + 2 NA Intergenic L1P4|LINE|L1 658911 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 273-337 chr4 131464339 131464499 + 2 NA Intergenic L1MB1|LINE|L1 -300419 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 296-237 chr2 115654242 115654447 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 310529 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 447-226 chr6 15886631 15886904 + 2 NA Intergenic MIRb|SINE|MIR -223709 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 228-111 chr15 57009958 57010179 + 2 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 90623 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 723-32 chr2 14969681 14970243 + 2 NA Intergenic Intergenic 337245 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 497-127 chr2 69824169 69824585 + 2 NA intron (NM_001320700, intron 12 of 12) AluSz|SINE|Alu -5283 NM_178439 64395 Hs.293971 NM_178439 ENSG00000087338 GMCL1 BTBD13|GCL|GCL1|SPATA29 germ cell-less 1, spermatogenesis associated protein-coding 259-206 chr2 112673523 112673742 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 27693 NM_005415 6574 Hs.187946 NM_005415 ENSG00000144136 SLC20A1 GLVR1|Glvr-1|PIT1|PiT-1 solute carrier family 20 member 1 protein-coding 306-50 chr10 26086405 26086579 + 2 NA intron (NM_017433, intron 14 of 34) intron (NM_017433, intron 14 of 34) -129815 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 343-518 chr7 105837112 105837303 + 2 NA intron (NM_152749, intron 2 of 3) MSTB|LTR|ERVL-MaLR 39378 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 315-75 chr10 129484992 129485178 + 2 NA intron (NM_002412, intron 1 of 4) L1MEc|LINE|L1 17844 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 538-90 chr17 71897548 71897906 + 2 NA Intergenic Intergenic 128252 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 349-344 chr3 149064843 149065099 + 2 NA intron (NM_001318935, intron 8 of 25) intron (NM_001318935, intron 8 of 25) -21361 NR_046648 100873945 Hs.742423 NR_046648 ENSG00000239718 HLTF-AS1 - HLTF antisense RNA 1 ncRNA 546-233 chr8 63942893 63943380 + 2 NA intron (NR_125826, intron 4 of 4) L1MB7|LINE|L1 173706 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 304-255 chr2 70012669 70012849 + 2 NA intron (NR_033872, intron 7 of 10) Charlie1a|DNA|hAT-Charlie -50494 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 446-168 chr20 47068197 47068471 + 2 NA intron (NM_172110, intron 5 of 13) intron (NM_172110, intron 5 of 13) -98633 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 321-462 chr5 58633603 58633818 + 2 NA intron (NM_138453, intron 2 of 4) L2b|LINE|L2 50635 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 253-43 chr10 12563488 12563734 + 2 NA intron (NM_001351032, intron 4 of 11) intron (NM_001351032, intron 4 of 11) -15142 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 565-28 chr12 1673148 1673547 + 2 NA Intergenic L1MEd|LINE|L1 -12967 NR_037422 100500816 NR_037422 ENSG00000266043 MIR3649 - microRNA 3649 ncRNA 206-165 chr3 83980469 83980607 + 2 NA Intergenic Intergenic 889037 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 227-326 chr6 147659565 147659734 + 2 NA Intergenic Intergenic 150959 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 312-85 chr11 79252448 79252650 + 2 NA intron (NM_001098816, intron 2 of 33) intron (NM_001098816, intron 2 of 33) 149560 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 395-139 chr17 71255830 71256064 + 2 NA Intergenic LTR16E2|LTR|ERVL -53768 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 379-292 chr6 67071285 67071539 + 2 NA Intergenic L1M4|LINE|L1 -983939 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 244-2 chr1 33878801 33878971 + 2 NA intron (NR_038372, intron 5 of 7) intron (NR_038372, intron 5 of 7) 9930 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 337-574 chr9 30632367 30632686 + 2 NA Intergenic Intergenic -224072 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 297-273 chr21 22637711 22637907 + 2 NA Intergenic L1M1|LINE|L1 -441475 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 475-116 chr18 63355456 63355799 + 2 NA intron (NM_002035, intron 3 of 9) intron (NM_002035, intron 3 of 9) 11579 NM_002035 2531 Hs.74050 NM_002035 ENSG00000119537 KDSR DHSR|EKVP4|FVT1|SDR35C1 3-ketodihydrosphingosine reductase protein-coding 221-312 chr8 135143462 135143623 + 2 NA Intergenic Intergenic -90589 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 326-139 chr13 74118505 74118754 + 2 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 15300 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 351-205 chr2 11044600 11044848 + 2 NA Intergenic Intergenic 87452 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 249-170 chr19 16766495 16766736 + 2 NA intron (NM_001007525, intron 10 of 18) AluJb|SINE|Alu 35423 NM_001347994 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 395-66 chr12 25389663 25389885 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -138845 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 393-148 chr19 21052124 21052367 + 2 NA intron (NM_001172671, intron 4 of 4) L1MB2|LINE|L1 -29902 NR_117088 148206 Hs.729186 NM_182515 ENSG00000160352 ZNF714 - zinc finger protein 714 protein-coding 185-5 chr1 105483966 105484134 + 2 NA Intergenic LTR49-int|LTR|ERV1 134885 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 334-529 chr8 76087557 76087754 + 2 NA Intergenic L1PB1|LINE|L1 -318999 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 204-187 chr3 3214605 3214766 + 2 NA Intergenic Intergenic -34968 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 530-22 chr1 235609658 235610116 + 2 NA intron (NM_001098721, intron 1 of 3) AluJb|SINE|Alu 39897 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 366-53 chr10 75255830 75256028 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -19972 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 213-49 chr11 3369050 3369201 + 2 NA intron (NR_046381, intron 4 of 6) L1MA9|LINE|L1 10021 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 339-430 chr4 164430385 164430696 + 2 NA Intergenic L1MD3|LINE|L1 -47285 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 625-93 chr6 9259181 9259630 + 2 NA Intergenic Intergenic 607196 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 250-240 chr20 34213065 34213220 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -47223 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 256-44 chr10 62496763 62496951 + 2 NA intron (NM_199451, intron 4 of 7) intron (NM_199451, intron 4 of 7) -23591 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 338-219 chr17 76756359 76756602 + 2 NA intron (NR_148240, intron 9 of 13) intron (NR_148240, intron 9 of 13) 18979 NM_001353019 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 193-102 chr2 56357352 56357490 + 2 NA intron (NM_001348515, intron 3 of 3) intron (NM_001348515, intron 3 of 3) -171651 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 233-394 chr9 24804800 24804970 + 2 NA Intergenic Intergenic -258988 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 288-303 chr4 92070670 92070839 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 206548 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 205-96 chr15 39766282 39766467 + 2 NA intron (NM_152597, intron 3 of 11) intron (NM_152597, intron 3 of 11) 16467 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 219-295 chr5 115417785 115417946 + 2 NA Intergenic Intergenic -121211 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 352-290 chr20 59224680 59224900 + 2 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 33770 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 567-6 chr1 79386760 79387197 + 2 NA Intergenic L2a|LINE|L2 -380248 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 579-13 chr10 9421862 9422276 + 2 NA Intergenic L1MD|LINE|L1 -126476 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 356-19 chr1 118671708 118672038 + 2 NA Intergenic LTR16C|LTR|ERVL 316470 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 405-336 chr8 135676331 135676676 + 2 NA Intergenic Intergenic 219047 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 417-180 chr3 103830255 103830613 + 2 NA Intergenic Intergenic -306318 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 460-237 chr5 31828439 31828812 + 2 NA intron (NM_178140, intron 2 of 24) AluJr4|SINE|Alu 107534 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 668-81 chr5 51109784 51110319 + 2 NA Intergenic Intergenic -139864 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 321-112 chr11 114991969 114992136 + 2 NA Intergenic L1M4b|LINE|L1 313525 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 112-42 chr7 10682375 10682473 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -20252 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 252-459 chrX 62896460 62896709 + 2 NA Intergenic L1M2|LINE|L1 454748 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 279-131 chr16 83375953 83376185 + 2 NA intron (NM_001220489, intron 5 of 12) MLT1K|LTR|ERVL-MaLR -132277 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 502-218 chr5 37591196 37591508 + 2 NA intron (NM_001345998, intron 9 of 17) L1M5|LINE|L1 212034 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 321-448 chr5 9457622 9457849 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -53598 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 188-68 chr16 18031688 18031837 + 2 NA Intergenic (ATTTT)n|Simple_repeat|Simple_repeat 300900 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 246-375 chr7 77928094 77928288 + 2 NA intron (NM_001366085, intron 9 of 10) intron (NM_001366085, intron 9 of 10) 88061 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 451-156 chr3 165714508 165714928 + 2 NA Intergenic MER57-int|LTR|ERV1 122705 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 208-272 chr8 125461332 125461524 + 2 NA Intergenic L2a|LINE|L2 29219 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 387-359 chr8 51558329 51558615 + 2 NA intron (NM_144651, intron 3 of 22) intron (NM_144651, intron 3 of 22) 250973 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 543-241 chr8 12977844 12978274 + 2 NA intron (NM_020844, intron 1 of 4) MER83|LTR|ERV1 32386 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 357-13 chr1 112063111 112063417 + 2 NA Intergenic Intergenic 72728 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 243-313 chr4 23531945 23532166 + 2 NA Intergenic L2|LINE|L2 349237 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 284-120 chr14 70950393 70950585 + 2 NA intron (NM_014982, intron 2 of 35) intron (NM_014982, intron 2 of 35) 43030 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 126-53 chr5 60652486 60652593 + 2 NA intron (NM_001145208, intron 2 of 9) MER72B|LTR|ERV1 47627 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 295-320 chr4 19325407 19325581 + 2 NA Intergenic L2a|LINE|L2 -926411 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 268-405 chr8 98310118 98310253 + 2 NA Intergenic LTR39|LTR|ERV1 -15950 NM_001321635 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 210-190 chr4 37293380 37293544 + 2 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 48719 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 359-326 chr3 89443858 89444128 + 2 NA intron (NM_005233, intron 13 of 16) intron (NM_005233, intron 13 of 16) 336372 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 174-2 chr1 84567590 84567708 + 2 NA intron (NM_004388, intron 3 of 6) intron (NM_004388, intron 3 of 6) 6791 NM_004388 1486 Hs.513557 NM_004388 ENSG00000117151 CTBS CTB chitobiase protein-coding 335-281 chr2 221138776 221139026 + 2 NA Intergenic Intergenic 433403 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 281-104 chr13 58710389 58710630 + 2 NA Intergenic AluSx3|SINE|Alu -477392 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 233-183 chr2 153851270 153851427 + 2 NA Intergenic L1ME3|LINE|L1 -20574 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 352-505 chr7 89266784 89267028 + 2 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -471169 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 524-166 chr4 39903285 39903753 + 2 NA intron (NM_001100399, intron 12 of 32) intron (NM_001100399, intron 12 of 32) 74392 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 360-68 chr11 91938581 91938811 + 2 NA Intergenic Intergenic -286338 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 195-245 chr8 137581029 137581166 + 2 NA Intergenic Intergenic -167509 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 356-339 chr3 172944894 172945117 + 2 NA intron (NM_031955, intron 6 of 10) L1MB3|LINE|L1 194003 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 357-69 chr11 80100153 80100347 + 2 NA Intergenic Intergenic -659220 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 439-173 chr22 49522240 49522490 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 21101 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 163-118 chr7 111028661 111028819 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -62266 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 209-76 chr12 99487746 99487915 + 2 NA intron (NM_152788, intron 10 of 25) L1MEd|LINE|L1 -159923 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 209-286 chr7 351658 351807 + 2 NA Intergenic Intergenic -27693 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 357-370 chr5 167448185 167448462 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -125336 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 345-363 chr3 125220635 125220907 + 2 NA Intergenic Intergenic -8006 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 316-612 chrX 120338936 120339144 + 2 NA Intergenic L1M4b|LINE|L1 -23049 NM_012069 23439 Hs.292599 NM_012069 ENSG00000101892 ATP1B4 - ATPase Na+/K+ transporting family member beta 4 protein-coding 317-248 chr2 129523607 129523808 + 2 NA Intergenic L1PB1|LINE|L1 -249816 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 346-176 chr16 52593935 52594151 + 2 NA intron (NR_033920, intron 1 of 3) L1M4|LINE|L1 12932 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 355-390 chr5 19612141 19612327 + 2 NA intron (NM_001349559, intron 6 of 12) intron (NM_001349559, intron 6 of 12) 274038 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 150-44 chr17 69876674 69876803 + 2 NA intron (NR_109972, intron 4 of 4) L1MB7|LINE|L1 -84969 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 384-234 chr3 102003156 102003402 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 62420 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 411-154 chr2 115255884 115256120 + 2 NA intron (NM_001321906, intron 2 of 26) THE1C-int|LTR|ERVL-MaLR -53235 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 197-60 chr14 84270057 84270215 + 2 NA Intergenic L3|LINE|CR1 -1001796 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 333-591 chr8 135283674 135283994 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 49703 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 264-414 chr8 79274223 79274432 + 2 NA Intergenic Intergenic -57861 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 353-334 chr3 106116175 106116385 + 2 NA Intergenic L1MDa|LINE|L1 -246879 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 659-31 chr14 56720372 56720851 + 2 NA Intergenic Intergenic 85056 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 370-363 chr5 9807898 9808186 + 2 NA intron (NR_027112, intron 4 of 12) MLT1A-int|LTR|ERVL-MaLR -46335 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 235-86 chr12 80778745 80778916 + 2 NA Intergenic Intergenic 15676 NR_120470 101928420 Hs.739989 NR_120468 ENSG00000257741 LINC01490 - long intergenic non-protein coding RNA 1490 ncRNA 759-47 chr3 25343697 25344401 + 2 NA intron (NM_001290300, intron 1 of 7) intron (NM_001290300, intron 1 of 7) 3247 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 637-85 chr4 32074665 32075127 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -52474 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 152-80 chr5 127149530 127149657 + 2 NA Intergenic Intergenic -76101 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 158-53 chr2 63349160 63349269 + 2 NA intron (NR_148704, intron 13 of 18) intron (NR_148704, intron 13 of 18) 88793 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 330-379 chr4 66622477 66622690 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 345759 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 452-141 chr2 161579055 161579310 + 2 NA Intergenic Intergenic -45153 NM_001178016 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 460-211 chr3 180652334 180652668 + 2 NA intron (NM_181426, intron 7 of 19) intron (NM_181426, intron 7 of 19) 26988 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 489-129 chr2 49532149 49532505 + 2 NA Intergenic L1M4|LINE|L1 -377800 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 344-400 chr5 131239642 131239928 + 2 NA Intergenic L1MEi|LINE|L1 -24224 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 420-113 chr18 69361030 69361390 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -39678 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 264-142 chr15 49904073 49904315 + 2 NA intron (NR_073596, intron 20 of 27) intron (NR_073596, intron 20 of 27) 209185 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 331-510 chr7 118805461 118805659 + 2 NA Intergenic L2a|LINE|L2 580856 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 660-38 chr19 39635939 39636585 + 2 NA Intergenic L1MA2|LINE|L1 -2423 NR_026870 100129935 Hs.659307 NR_026870 ENSG00000268153 LOC100129935 - galectin 14 pseudogene pseudo 168-82 chr4 89155739 89155898 + 2 NA Intergenic L2c|LINE|L2 43001 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 300-377 chr5 162765121 162765297 + 2 NA Intergenic MIRc|SINE|MIR -672362 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 281-126 chr14 83193984 83194239 + 2 NA Intergenic MIRc|SINE|MIR 551479 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 344-118 chr12 128284022 128284204 + 2 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) -9979 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 643-115 chr7 43625330 43625748 + 2 NA 3' UTR (NM_004760, exon 7 of 7) 3' UTR (NM_004760, exon 7 of 7) 42431 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 421-63 chr13 56874381 56874619 + 2 NA Intergenic Intergenic -266418 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 287-134 chr14 49817756 49817933 + 2 NA intron (NM_001301732, intron 16 of 31) L1MEc|LINE|L1 34944 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 290-469 chr8 133149311 133149569 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger -41599 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 324-268 chr2 101944513 101944753 + 2 NA Intergenic Intergenic -38832 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 225-118 chr16 77626054 77626188 + 2 NA Intergenic Intergenic -96371 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 464-150 chr20 59714861 59715127 + 2 NA intron (NM_001199506, intron 1 of 12) L1ME3A|LINE|L1 -6216 NM_183244 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 179-56 chr20 7713613 7713764 + 2 NA Intergenic L1M6|LINE|L1 226770 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 230-119 chr14 82879465 82879596 + 2 NA Intergenic Intergenic 236898 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 223-244 chr4 38763513 38763676 + 2 NA Intergenic MIR|SINE|MIR 19396 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 311-161 chr15 62290211 62290390 + 2 NA Intergenic Intergenic 14434 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 439-232 chr5 43358100 43358450 + 2 NA Intergenic LTR54|LTR|ERV1 38862 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 306-402 chr5 98628904 98629206 + 2 NA Intergenic L1MA5|LINE|L1 -139577 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 245-9 chr1 111374870 111375001 + 2 NA Intergenic L1MA3|LINE|L1 14916 NR_029429 441897 Hs.568387 NR_029429 ENSG00000227179 PGCP1 - progastricsin pseudogene 1 pseudo 257-60 chr11 37696795 37696985 + 2 NA Intergenic Intergenic -241711 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 326-235 chr2 34631664 34631863 + 2 NA Intergenic Intergenic -45794 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 262-45 chr10 53105415 53105549 + 2 NA Intergenic Intergenic -333782 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 560-7 chr1 159388358 159388686 + 2 NA Intergenic L1MA8|LINE|L1 -8943 NM_001363557 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 191-210 chr8 86252505 86252634 + 2 NA Intergenic L1MA1|LINE|L1 -22188 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 289-462 chr8 59256849 59257030 + 2 NA Intergenic Intergenic 137729 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 380-231 chr22 32974441 32974749 + 2 NA intron (NM_003490, intron 3 of 13) L3|LINE|CR1 32226 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 286-81 chr12 5904401 5904618 + 2 NA intron (NM_001278596, intron 3 of 25) intron (NM_001278596, intron 3 of 25) 40750 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 338-141 chr12 126026482 126026789 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -43261 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 495-163 chr3 160247041 160247477 + 2 NA intron (NR_148401, intron 18 of 18) intron (NR_148401, intron 18 of 18) 21623 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 547-206 chr6 93909954 93910271 + 2 NA Intergenic Intergenic 191809 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 404-79 chr12 39133301 39133528 + 2 NA Intergenic Intergenic -227823 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 356-17 chr1 98910269 98910539 + 2 NA intron (NM_001010861, intron 5 of 5) MER6A|DNA|TcMar-Tigger -93872 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 160-3 chr1 60764105 60764211 + 2 NA intron (NR_110628, intron 1 of 5) intron (NR_110628, intron 1 of 5) 61426 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 227-365 chr8 47043647 47043824 + 2 NA Intergenic L1P4d|LINE|L1 -145572 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 141-52 chr3 22296343 22296469 + 2 NA Intergenic LTR16B1|LTR|ERVL 339267 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 193-79 chr17 34557920 34558111 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 21354 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 319-542 chr8 115027258 115027555 + 2 NA Intergenic L1M5|LINE|L1 640607 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 259-307 chr5 22440008 22440230 + 2 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -226269 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 348-249 chr2 222306381 222306727 + 2 NA Intergenic Intergenic -7556 NM_181459 5077 Hs.42146 NM_000438 ENSG00000135903 PAX3 CDHS|HUP2|WS1|WS3 paired box 3 protein-coding 540-229 chr9 106082183 106082582 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger 387841 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 472-311 chr8 67309619 67310025 + 2 NA intron (NM_006421, intron 1 of 38) intron (NM_006421, intron 1 of 38) 33959 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 345-376 chr4 30862234 30862448 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 141972 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 509-133 chr21 27297952 27298401 + 2 NA Intergenic L1MDa|LINE|L1 -331088 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 247-403 chr8 81257436 81257597 + 2 NA Intergenic Intergenic -23020 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 426-19 chr1 245161069 245161408 + 2 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 6253 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 353-250 chr2 114370939 114371171 + 2 NA Intergenic Intergenic -71586 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 580-47 chr14 59535716 59536101 + 2 NA intron (NM_001164399, intron 13 of 19) ERV3-16A3_LTR|LTR|ERVL 40904 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 211-117 chr17 81345512 81345667 + 2 NA Intergenic CpG -36341 NR_038080 284185 Hs.631762 NM_178519 LINC00482 C17orf55 long intergenic non-protein coding RNA 482 ncRNA 622-5 chr1 245862595 245863090 + 2 NA intron (NM_022743, intron 9 of 11) L3|LINE|CR1 554570 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 332-552 chr8 129777151 129777369 + 2 NA intron (NM_031415, intron 2 of 13) intron (NM_031415, intron 2 of 13) 9364 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 338-353 chr3 131278246 131278516 + 2 NA intron (NM_001353043, intron 17 of 17) intron (NM_001353043, intron 17 of 17) -83464 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 280-90 chr12 40635638 40635828 + 2 NA Intergenic Intergenic -56706 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 495-273 chrX 42912497 42912965 + 2 NA Intergenic LTR16A2|LTR|ERVL -134568 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 563-29 chr11 31275417 31275947 + 2 NA intron (NM_181807, intron 7 of 8) AluSp|SINE|Alu 94057 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 571-104 chr3 55320259 55320737 + 2 NA Intergenic Intergenic 142326 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 285-429 chr8 124741801 124742035 + 2 NA Intergenic Intergenic -13411 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 250-269 chr3 27048866 27049105 + 2 NA Intergenic LTR88b|LTR|Gypsy? 167538 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 428-165 chr21 32166688 32167033 + 2 NA Intergenic L1MC3|LINE|L1 -80565 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 241-297 chr5 42651009 42651223 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 85252 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 270-206 chr20 15554693 15554901 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 357957 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 233-326 chr6 21982711 21982914 + 2 NA intron (NR_015410, intron 6 of 11) L1MB7|LINE|L1 164381 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 136-47 chr2 194919510 194919612 + 2 NA Intergenic MIR|SINE|MIR 188966 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 329-5 chr1 49794804 49795037 + 2 NA intron (NM_001323575, intron 2 of 12) intron (NM_001323575, intron 2 of 12) 229034 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 726-72 chr7 53317151 53317537 + 2 NA Intergenic Intergenic 281711 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 494-151 chr20 42746624 42747050 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 61354 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 258-433 chrX 17163711 17163911 + 2 NA Intergenic L1M4|LINE|L1 -211389 NM_198270 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 397-176 chr2 192797154 192797390 + 2 NA Intergenic Intergenic 47427 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 269-228 chr21 7932556 7932807 + 2 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -103049 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 283-442 chr8 109698296 109698563 + 2 NA Intergenic Intergenic -6638 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 404-91 chr13 78599414 78599677 + 2 NA TTS (NR_158457) TTS (NR_158457) 3423 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 400-48 chr11 22521851 22522213 + 2 NA Intergenic Intergenic -30013 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 350-268 chr20 9122815 9123038 + 2 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 53872 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 407-220 chr4 51953414 51953638 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 66837 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 255-188 chr2 35707256 35707463 + 2 NA Intergenic Intergenic 235954 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 348-358 chr4 60170667 60170921 + 2 NA Intergenic Intergenic -751825 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 324-53 chr10 42317734 42317990 + 2 NA Intergenic Intergenic 50183 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 319-92 chr11 79882499 79882741 + 2 NA Intergenic Intergenic -441590 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 292-439 chr8 107247696 107247869 + 2 NA Intergenic Intergenic 88733 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 418-96 chr18 5267400 5267802 + 2 NA Intergenic L1PA13|LINE|L1 28125 NM_001243702 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 365-47 chr10 43029843 43030104 + 2 NA Intergenic Intergenic 32410 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 177-117 chr4 57238532 57238651 + 2 NA Intergenic Intergenic -128206 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 739-21 chr15 33548965 33549454 + 2 NA intron (NM_001243996, intron 9 of 102) intron (NM_001243996, intron 9 of 102) 238242 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 210-123 chr2 50409843 50410007 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -62169 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 432-306 chrX 98873651 98874075 + 2 NA Intergenic L1PA15|LINE|L1 -1309328 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 162-92 chr3 182099396 182099493 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 147080 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 362-206 chr2 31068539 31068794 + 2 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 60974 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 387-18 chr1 187463927 187464138 + 2 NA intron (NR_132374, intron 1 of 2) L1ME4a|LINE|L1 20404 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 275-217 chr2 233883304 233883457 + 2 NA Intergenic L1MEf|LINE|L1 -14971 NR_024322 151507 Hs.355809 NM_001166217 ENSG00000224287 MSL3P1 MSL3L2 MSL complex subunit 3 pseudogene 1 pseudo 217-96 chr12 133169781 133169934 + 2 NA Intergenic L1MB8|LINE|L1 -11638 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 305-444 chr5 99550888 99551074 + 2 NA intron (NR_110562, intron 3 of 3) (TTA)n|Simple_repeat|Simple_repeat 16991 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 280-167 chr18 2045026 2045279 + 2 NA Intergenic Intergenic 526353 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 188-80 chr17 77510746 77510902 + 2 NA Intergenic L2c|LINE|L2 -16177 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 528-157 chr3 76205558 76205947 + 2 NA Intergenic LTR33|LTR|ERVL -420203 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 235-79 chr12 23237206 23237371 + 2 NA Intergenic L1MA8|LINE|L1 61652 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 208-189 chr4 91806581 91806734 + 2 NA Intergenic Intergenic 470645 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 213-156 chr2 239020132 239020329 + 2 NA Intergenic Intergenic 48684 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 360-234 chr2 129400248 129400443 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -126454 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 272-150 chr17 52265779 52265953 + 2 NA Intergenic LTR16A|LTR|ERVL -105849 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 452-168 chr3 80414394 80414835 + 2 NA Intergenic Intergenic -350283 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 478-239 chr5 74474465 74474784 + 2 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 62352 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 314-548 chr7 132105371 132105606 + 2 NA Intergenic Intergenic -155373 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 257-65 chr11 82667777 82667958 + 2 NA Intergenic L1MEd|LINE|L1 65997 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 376-178 chr2 54251101 54251358 + 2 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 5000 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 344-81 chr11 87479186 87479515 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 240061 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 373-275 chr4 676867 677136 + 2 NA promoter-TSS (NM_002477) promoter-TSS (NM_002477) -921 NM_002477 4636 Hs.410970 NM_002477 ENSG00000215375 MYL5 MYLC2 myosin light chain 5 protein-coding 300-128 chr15 33484205 33484493 + 2 NA intron (NM_001243996, intron 2 of 102) intron (NM_001243996, intron 2 of 102) 173382 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 827-45 chr5 151568867 151569471 + 2 NA promoter-TSS (NM_001447) promoter-TSS (NM_001447) -225 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 691-87 chr8 112787613 112788078 + 2 NA intron (NM_001363185, intron 11 of 66) L1MA3|LINE|L1 144352 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 255-159 chr17 51627649 51627852 + 2 NA Intergenic Intergenic 192323 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 202-108 chr2 11661329 11661447 + 2 NA intron (NM_012344, intron 2 of 3) L2c|LINE|L2 8807 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 310-260 chr2 127577139 127577316 + 2 NA intron (NM_001080527, intron 8 of 46) intron (NM_001080527, intron 8 of 46) -6265 NR_132317 105373609 Hs.677195 NR_132317 LOC105373609 - uncharacterized LOC105373609 ncRNA 230-392 chr8 141061237 141061415 + 2 NA Intergenic Intergenic -59247 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 236-193 chr2 208374007 208374162 + 2 NA intron (NM_001309516, intron 1 of 12) intron (NM_001309516, intron 1 of 12) 14392 NM_001309516 5746 Hs.570296 NM_005048 ENSG00000144407 PTH2R PTHR2 parathyroid hormone 2 receptor protein-coding 502-172 chr3 16612183 16612587 + 2 NA Intergenic Intergenic -6962 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 166-21 chr13 49043518 49043632 + 2 NA intron (NM_001079673, intron 2 of 25) L1M5|LINE|L1 -66742 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 433-254 chr6 147504514 147504899 + 2 NA Intergenic Intergenic -3984 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 266-196 chr2 157635997 157636173 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -7221 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 340-156 chr14 78549374 78549634 + 2 NA intron (NM_004796, intron 1 of 16) L2b|LINE|L2 145785 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 352-424 chr5 108969646 108969909 + 2 NA intron (NR_146155, intron 13 of 19) L1ME4a|LINE|L1 45171 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 354-510 chrX 75001171 75001363 + 2 NA Intergenic Intergenic -75815 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 505-231 chr4 181242524 181242857 + 2 NA Intergenic Intergenic 22339 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 296-461 chr8 76584828 76585021 + 2 NA Intergenic Intergenic -96323 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 462-155 chr2 213464238 213464526 + 2 NA intron (NR_047660, intron 8 of 14) MER52-int|LTR|ERV1 179918 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 423-206 chr4 131981328 131981704 + 2 NA Intergenic Intergenic 216678 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 738-61 chr6 163155112 163155584 + 2 NA intron (NM_001080379, intron 4 of 4) L2c|LINE|L2 36654 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 350-391 chr5 36560985 36561188 + 2 NA Intergenic AluSx|SINE|Alu -45269 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 265-198 chr2 158339264 158339450 + 2 NA intron (NM_001301684, intron 3 of 11) intron (NM_001301684, intron 3 of 11) 117396 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 421-55 chr12 84115232 84115517 + 2 NA Intergenic Intergenic 797425 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 252-356 chr6 21073335 21073528 + 2 NA intron (NM_017774, intron 12 of 15) L1MC1|LINE|L1 438461 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 1001-6 chr12 37926281 37926992 + 2 NA Intergenic ALR/Alpha|Satellite|centr -390138 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 264-416 chr8 83025071 83025330 + 2 NA Intergenic Intergenic 113096 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 483-264 chr8 81342690 81343087 + 2 NA Intergenic AluSx3|SINE|Alu 62352 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 521-269 chr9 80297926 80298353 + 2 NA Intergenic MER110-int|LTR|ERV1 323116 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 353-352 chr4 13052957 13053288 + 2 NA Intergenic Intergenic 431218 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 149-5 chr1 83983291 83983428 + 2 NA intron (NM_001350214, intron 1 of 21) L1PA16|LINE|L1 15773 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 586-89 chr20 39196613 39197087 + 2 NA Intergenic Intergenic 27898 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 698-31 chr18 10211538 10212123 + 2 NA Intergenic Intergenic 202540 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 358-287 chr3 6054662 6054987 + 2 NA Intergenic Intergenic 750625 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 211-99 chr15 91932312 91932433 + 2 NA intron (NR_135775, intron 2 of 10) L1MC5|LINE|L1 78068 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 331-73 chr10 126026789 126027008 + 2 NA intron (NM_003474, intron 21 of 22) L1PA11|LINE|L1 -53625 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 356-123 chr13 21435872 21436058 + 2 NA intron (NR_104486, intron 1 of 14) LTR16A|LTR|ERVL 23338 NR_104487 253832 Hs.564611 NM_153251 ENSG00000180776 ZDHHC20 4933421L13Rik|DHHC-20|DHHC20 zinc finger DHHC-type containing 20 protein-coding 378-461 chrUn_KI270538v1 14742 15107 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 579-22 chr10 123741163 123741658 + 2 NA Intergenic Intergenic 75055 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 209-61 chr11 116307514 116307685 + 2 NA Intergenic Intergenic -331823 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 250-378 chr6 105298784 105298964 + 2 NA intron (NM_002726, intron 10 of 14) intron (NM_002726, intron 10 of 14) 104208 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 340-576 chr9 137840261 137840461 + 2 NA Intergenic AluY|SINE|Alu 1942 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 202-157 chr3 26973845 26973998 + 2 NA Intergenic Intergenic 242602 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 382-195 chr2 67036242 67036503 + 2 NA Intergenic L2c|LINE|L2 -50074 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 339-116 chr11 128440086 128440301 + 2 NA Intergenic L1ME1|LINE|L1 82117 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 282-287 chr3 16105959 16106158 + 2 NA Intergenic L2a|LINE|L2 -68622 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 326-510 chr7 106594461 106594778 + 2 NA Intergenic L1M5|LINE|L1 66539 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 769-22 chr18 13939195 13939719 + 2 NA Intergenic Intergenic -23750 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 353-421 chr5 117941259 117941546 + 2 NA intron (NR_104997, intron 2 of 2) MLT2B4|LTR|ERVL 211041 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 300-447 chr8 15571197 15571405 + 2 NA intron (NM_001356429, intron 1 of 10) Tigger1|DNA|TcMar-Tigger 31038 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 280-332 chr5 115784844 115785035 + 2 NA Intergenic Intergenic 31718 NR_136621 1036 Hs.442378 NM_001801 ENSG00000129596 CDO1 CDO-I cysteine dioxygenase type 1 protein-coding 270-251 chr3 160910788 160910983 + 2 NA intron (NR_134243, intron 2 of 5) intron (NR_134243, intron 2 of 5) 40287 NR_134243 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 304-117 chr12 79694538 79694728 + 2 NA Intergenic HAL1|LINE|L1 -3536 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 404-133 chr17 74623470 74623792 + 2 NA 5' UTR (NM_181449, exon 1 of 4) 5' UTR (NM_181449, exon 1 of 4) 107 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 568-8 chr1 238666853 238667397 + 2 NA Intergenic L1M4|LINE|L1 -181108 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 116-37 chr5 46114411 46114479 + 2 NA Intergenic Intergenic -418065 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 325-289 chr2 183646816 183647006 + 2 NA Intergenic Intergenic 522468 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 299-408 chr7 7202290 7202546 + 2 NA intron (NM_020156, intron 1 of 3) L1MB3|LINE|L1 19803 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 208-207 chr5 43195050 43195216 + 2 NA intron (NR_072980, intron 1 of 3) intron (NR_072980, intron 1 of 3) 2281 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 316-190 chr16 8221905 8222113 + 2 NA Intergenic Intergenic 367829 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 408-93 chr12 130663300 130663696 + 2 NA intron (NM_001351226, intron 1 of 21) L1MC4|LINE|L1 -29578 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 296-53 chr10 67450691 67450910 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -47390 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 497-124 chr2 59378127 59378470 + 2 NA Intergenic L1MA4A|LINE|L1 160590 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 240-392 chr7 17698744 17698942 + 2 NA Intergenic L1MA9|LINE|L1 -139934 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 308-419 chr6 63089620 63089876 + 2 NA Intergenic Intergenic 230229 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 158-33 chr15 56779242 56779364 + 2 NA Intergenic Intergenic -45217 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 351-504 chr8 135909393 135909639 + 2 NA Intergenic Intergenic 452060 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 407-319 chr8 79892908 79893263 + 2 NA Intergenic Intergenic -21348 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 278-428 chr8 121119662 121119807 + 2 NA Intergenic Intergenic -307688 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 366-70 chr11 4465053 4465255 + 2 NA Intergenic MSTC-int|LTR|ERVL-MaLR 15859 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 316-365 chr3 145372944 145373141 + 2 NA Intergenic L1MD1|LINE|L1 696143 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 249-330 chr5 51900453 51900647 + 2 NA Intergenic Intergenic -107481 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 404-167 chr2 76817022 76817371 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -168769 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 367-36 chr1 224937144 224937352 + 2 NA intron (NM_001349912, intron 1 of 5) L1MA4|LINE|L1 7573 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 307-46 chr10 38493905 38494126 + 2 NA Intergenic Intergenic 65869 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 357-362 chr5 137167681 137167861 + 2 NA intron (NM_004598, intron 3 of 10) L1MA3|LINE|L1 39574 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 673-47 chr19 24327763 24328296 + 2 NA Intergenic ALR/Alpha|Satellite|centr -164582 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 285-221 chr2 164279261 164279520 + 2 NA Intergenic L1MA6|LINE|L1 289105 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 196-276 chrX 64525947 64526079 + 2 NA Intergenic L1PA13|LINE|L1 -130561 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 216-139 chr18 5223438 5223608 + 2 NA Intergenic L1MB5|LINE|L1 14506 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 430-248 chr5 96987280 96987580 + 2 NA intron (NM_005575, intron 4 of 17) intron (NM_005575, intron 4 of 17) 28997 NM_175920 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 157-89 chr4 46280034 46280158 + 2 NA intron (NM_001114175, intron 7 of 8) L2a|LINE|L2 109283 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 358-119 chr14 52906138 52906483 + 2 NA intron (NM_006832, intron 3 of 14) intron (NM_006832, intron 3 of 14) 44740 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 221-136 chr2 20850210 20850375 + 2 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -27162 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 315-450 chr7 87400682 87400951 + 2 NA TTS (NM_000443) TTS (NM_000443) 55152 NM_001243745 54677 Hs.125039 NM_021151 ENSG00000005469 CROT COT carnitine O-octanoyltransferase protein-coding 374-412 chr9 36957887 36958120 + 2 NA intron (NR_104000, intron 6 of 9) intron (NR_104000, intron 6 of 9) -64472 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 320-122 chr12 65869512 65869791 + 2 NA intron (NR_158984, intron 1 of 2) intron (NR_158984, intron 1 of 2) 11927 NR_120478 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 483-162 chr3 30283782 30284142 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -234906 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 355-304 chr22 33717580 33717822 + 2 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) -7285 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 356-291 chr20 48135961 48136300 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -146013 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 435 chr1 4758647 4758940 + 2 NA intron (NM_018836, intron 2 of 5) intron (NM_018836, intron 2 of 5) 104184 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 262-91 chr12 4260134 4260372 + 2 NA intron (NR_149145, intron 1 of 3) L1M4|LINE|L1 -13509 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 245-231 chr3 78233738 78233902 + 2 NA Intergenic L1M1|LINE|L1 -184857 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 511-258 chr8 81385059 81385380 + 2 NA Intergenic L1MA4A|LINE|L1 62220 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 290-302 chr4 411807 412046 + 2 NA Intergenic L1MB2|LINE|L1 61769 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 487-87 chr14 63057031 63057356 + 2 NA Intergenic Intergenic -11735 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 538-135 chr20 19413220 19413703 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -128865 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 821-2 chr1 60956211 60956789 + 2 NA intron (NR_110618, intron 2 of 3) intron (NR_110618, intron 2 of 3) 14276 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 521-92 chr15 69944894 69945271 + 2 NA Intergenic Intergenic 109848 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 514-75 chr13 91427567 91428045 + 2 NA intron (NM_004466, intron 1 of 7) THE1D|LTR|ERVL-MaLR 29185 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 123-23 chr17 61281301 61281370 + 2 NA intron (NM_001330413, intron 23 of 25) L1ME4b|LINE|L1 86369 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 671-67 chr3 134314827 134315306 + 2 NA intron (NR_146711, intron 1 of 1) intron (NR_146711, intron 1 of 1) 1490 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 1041-12 chr8 141912740 141913497 + 2 NA Intergenic L1MEc|LINE|L1 -126805 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 254-274 chr4 58992032 58992223 + 2 NA intron (NR_133941, intron 1 of 2) L1PREC2|LINE|L1 -3973 NR_133940 105377245 Hs.112674 NR_133939 ENSG00000249382 LINC02619 - long intergenic non-protein coding RNA 2619 ncRNA 725-49 chr5 67559908 67560474 + 2 NA Intergenic Intergenic 86598 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 290-107 chr12 48465897 48466099 + 2 NA Intergenic L1ME2|LINE|L1 -6667 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 314-122 chr12 30120206 30120366 + 2 NA Intergenic Tigger17c|DNA|TcMar-Tigger -335527 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 381-243 chr3 20610191 20610511 + 2 NA Intergenic L1PA15|LINE|L1 267883 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 239-133 chr17 70667031 70667177 + 2 NA Intergenic L1MEb|LINE|L1 497569 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 219-66 chr12 15248225 15248381 + 2 NA Intergenic L1MA4|LINE|L1 -26886 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 401-185 chr20 12596843 12597076 + 2 NA Intergenic Intergenic 340004 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 948-23 chr2 224682012 224682764 + 2 NA Intergenic Intergenic -96991 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 463-155 chr2 213629194 213629588 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -128676 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 301-340 chr4 161101939 161102164 + 2 NA Intergenic MER76|LTR|ERVL -920682 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 227-176 chr2 104105380 104105563 + 2 NA Intergenic Intergenic 302861 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 275-269 chr4 73757518 73757727 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 17053 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 956-20 chr3 38431308 38432131 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -22171 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 432-175 chr3 78066939 78067293 + 2 NA Intergenic Intergenic -18153 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 291-412 chr7 54342240 54342428 + 2 NA intron (NR_120516, intron 1 of 2) intron (NR_120516, intron 1 of 2) 11637 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 287-208 chr2 149661819 149662053 + 2 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -74161 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 461-66 chr12 63329806 63330159 + 2 NA Intergenic Intergenic -177172 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 246-19 chr1 186337727 186337896 + 2 NA intron (NM_003292, intron 31 of 50) intron (NM_003292, intron 31 of 50) 37442 NM_003292 7175 Hs.279640 NM_003292 ENSG00000047410 TPR - translocated promoter region, nuclear basket protein protein-coding 227-73 chr11 106555493 106555712 + 2 NA Intergenic L1ME1|LINE|L1 304195 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 265-270 chr4 65133330 65133557 + 2 NA Intergenic L1ME3|LINE|L1 -128943 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 300-49 chr10 82206191 82206406 + 2 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 26622 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 338-227 chr18 23249418 23249600 + 2 NA intron (NM_001256438, intron 7 of 9) MER5A|DNA|hAT-Charlie 93684 NM_138375 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 209-164 chr2 194592391 194592541 + 2 NA Intergenic L1M5|LINE|L1 -138129 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 910-26 chr3 66864843 66865430 + 2 NA Intergenic L1MB8|LINE|L1 -126800 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 189-137 chr4 21121619 21121776 + 2 NA intron (NM_147182, intron 2 of 8) MIRb|SINE|MIR -137688 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 300-192 chr2 68377437 68377624 + 2 NA intron (NM_002664, intron 1 of 8) L1MA2|LINE|L1 12248 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 229-285 chr4 154955971 154956145 + 2 NA Intergenic LTR82A|LTR|ERVL 174553 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 430-276 chr7 4362042 4362308 + 2 NA Intergenic L2a|LINE|L2 -227338 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 334-448 chr5 174833065 174833361 + 2 NA Intergenic Intergenic 81479 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 380-168 chr19 51489891 51490183 + 2 NA intron (NM_001278392, intron 5 of 5) intron (NM_001278392, intron 5 of 5) 10356 NM_033329 89858 Hs.249741 NM_033329 ENSG00000254521 SIGLEC12 S2V|SIGLECL1|SLG|Siglec-XII sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding 250-306 chr4 54481793 54481966 + 2 NA Intergenic Intergenic 125252 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 519-141 chr3 13913357 13913719 + 2 NA Intergenic L1PB2|LINE|L1 -19518 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 345-523 chr8 88433419 88433747 + 2 NA Intergenic L1M2|LINE|L1 -106100 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 342-547 chr9 26257646 26257981 + 2 NA Intergenic MIRb|SINE|MIR 191138 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 445-68 chr14 62599687 62600107 + 2 NA Intergenic (AAGG)n|Simple_repeat|Simple_repeat 445561 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 538-111 chr2 78469343 78469830 + 2 NA Intergenic Intergenic -75945 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 163-124 chr8 114007005 114007161 + 2 NA Intergenic Intergenic -570144 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 208-5 chr1 92154604 92154793 + 2 NA Intergenic L1MB1|LINE|L1 -14226 NM_015237 23285 Hs.21554 NM_015237 ENSG00000189195 KIAA1107 - KIAA1107 protein-coding 570-86 chr16 78654623 78654957 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 555136 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 447-72 chr14 48838635 48838953 + 2 NA Intergenic Intergenic 747586 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 223-330 chr8 5665523 5665713 + 2 NA Intergenic Intergenic -670704 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 222-96 chr13 54150054 54150200 + 2 NA Intergenic L1ME1|LINE|L1 -17256 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 365-232 chr20 31916270 31916460 + 2 NA intron (NR_148010, intron 7 of 14) MLT1G1|LTR|ERVL-MaLR 35681 NM_030815 81572 Hs.435755 NM_030815 ENSG00000088356 PDRG1 C20orf126|PDRG p53 and DNA damage regulated 1 protein-coding 204-230 chr5 9240222 9240368 + 2 NA intron (NM_003966, intron 5 of 22) intron (NM_003966, intron 5 of 22) -186400 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 554-109 chr2 21562681 21563037 + 2 NA Intergenic Intergenic 147793 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 148-16 chr11 126831736 126831866 + 2 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -108945 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 294-192 chr19 56615868 56616067 + 2 NA intron (NR_163262, intron 3 of 5) L1ME1|LINE|L1 20665 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 428-114 chr2 5361998 5362384 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 328927 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 317-175 chr15 96204019 96204323 + 2 NA intron (NR_125738, intron 2 of 4) MER103C|DNA|hAT-Charlie -76330 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 335-24 chr1 171631945 171632175 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 12297 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 197-139 chr3 113198129 113198287 + 2 NA Intergenic L1MC4a|LINE|L1 -13349 NM_001301867 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 437-148 chr2 163239174 163239560 + 2 NA Intergenic L1M3e|LINE|L1 -400600 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 278-460 chrUn_KI270442v1 83530 83730 + 2 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 233-167 chr2 67785629 67785802 + 2 NA Intergenic Intergenic 39847 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 449-286 chr8 128983384 128983617 + 2 NA Intergenic Intergenic -17499 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 376-124 chr15 79689255 79689614 + 2 NA Intergenic L1M4|LINE|L1 207563 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 366-298 chr4 587247 587568 + 2 NA Intergenic Intergenic 10239 NR_148199 105374338 Hs.518426 NR_148199 ENSG00000283183 LOC105374338 - uncharacterized LOC105374338 ncRNA 378-307 chr4 58948833 58949133 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -35299 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 266-437 chr8 124447622 124447801 + 2 NA Intergenic Intergenic -3109 NM_017956 55039 Hs.9925 NM_017956 ENSG00000183665 TRMT12 TRM12|TYW2 tRNA methyltransferase 12 homolog protein-coding 301-108 chr14 24866352 24866651 + 2 NA intron (NM_001351943, intron 3 of 6) MLT2D|LTR|ERVL 182499 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 764-57 chr5 150825087 150825707 + 2 NA Intergenic L1MA7|LINE|L1 -21124 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 257-291 chr4 31612552 31612741 + 2 NA Intergenic Intergenic 106102 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 264-34 chr10 16794274 16794430 + 2 NA intron (NM_152724, intron 1 of 7) intron (NM_152724, intron 1 of 7) 23072 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 259-60 chr10 95937300 95937491 + 2 NA intron (NM_001349008, intron 6 of 34) intron (NM_001349008, intron 6 of 34) 29430 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 459-277 chr7 50001383 50001699 + 2 NA intron (NM_001159878, intron 6 of 7) L1MEc|LINE|L1 91705 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 396-84 chr12 25490151 25490499 + 2 NA intron (NM_152590, intron 8 of 8) intron (NM_152590, intron 8 of 8) 62958 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 465-38 chr10 121535449 121535855 + 2 NA intron (NR_073009, intron 4 of 16) intron (NR_073009, intron 4 of 16) -4338 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 171-70 chr21 28514453 28514549 + 2 NA Intergenic L3|LINE|CR1 -24817 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 350-277 chr20 47602927 47603194 + 2 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 101173 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 453-110 chr2 63028274 63028535 + 2 NA intron (NM_001142615, intron 19 of 22) intron (NM_001142615, intron 19 of 22) 19307 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 334-138 chr14 40281967 40282285 + 2 NA Intergenic Intergenic -672585 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 362-302 chr4 47107493 47107718 + 2 NA intron (NM_000812, intron 3 of 8) MIR|SINE|MIR 76038 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 359-456 chr7 71709740 71709958 + 2 NA intron (NM_022479, intron 9 of 10) AluSz6|SINE|Alu -402079 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 514-25 chr10 39135715 39136075 + 2 NA Intergenic ALR/Alpha|Satellite|centr 439299 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 300-390 chr6 64039367 64039541 + 2 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 232618 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 435-24 chr10 11706569 11706839 + 2 NA Intergenic AluSc|SINE|Alu -35678 NM_024693 79746 Hs.22242 NM_024693 ENSG00000134463 ECHDC3 - enoyl-CoA hydratase domain containing 3 protein-coding 255-121 chr15 34306591 34306791 + 2 NA intron (NM_001042496, intron 2 of 25) intron (NM_001042496, intron 2 of 25) 12129 NM_005135 9990 Hs.510939 NM_005135 ENSG00000140199 SLC12A6 ACCPN|KCC3|KCC3A|KCC3B solute carrier family 12 member 6 protein-coding 471-254 chr7 57245408 57245845 + 2 NA Intergenic Intergenic -23452 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 196-16 chr1 147764985 147765143 + 2 NA intron (NM_005266, intron 1 of 1) intron (NM_005266, intron 1 of 1) -4462 NM_181703 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 254-228 chr21 21980036 21980282 + 2 NA Intergenic Intergenic 118300 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 352-4 chr1 45084853 45085181 + 2 NA intron (NM_020883, intron 2 of 13) MSTA-int|LTR|ERVL-MaLR 72763 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 345-433 chr5 114464478 114464771 + 2 NA intron (NM_021614, intron 4 of 7) intron (NM_021614, intron 4 of 7) 31113 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 316-171 chr14 61392361 61392564 + 2 NA intron (NM_006255, intron 2 of 13) L1ME2|LINE|L1 71019 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 173-84 chr21 30364936 30365102 + 2 NA Intergenic MamRep564|Unknown|Unknown 7252 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 342-420 chr5 116313567 116313797 + 2 NA Intergenic Intergenic 57939 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 322-45 chr1 231904785 231905047 + 2 NA intron (NM_001164541, intron 9 of 9) L1MC4|LINE|L1 -20918 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 143-30 chr16 9081944 9082040 + 2 NA Intergenic Intergenic -9652 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 305-30 chr1 145690501 145690746 + 2 NA intron (NM_001371361, intron 1 of 7) intron (NM_001371361, intron 1 of 7) 16745 NM_001371361 410-269 chr6 155614020 155614344 + 2 NA Intergenic MER41-int|LTR|ERV1 99338 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 389-284 chr5 33121780 33122098 + 2 NA Intergenic Intergenic -107796 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 506-218 chr4 172710428 172710850 + 2 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) 16239 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 293-92 chr12 104534008 104534190 + 2 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) -57534 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 179-8 chr10 86010980 86011084 + 2 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 253756 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 315-273 chr20 16093537 16093821 + 2 NA Intergenic Intergenic -107797 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 351-300 chr3 68314847 68315188 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -185620 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 370-226 chr2 50251743 50251928 + 2 NA intron (NM_001330093, intron 17 of 22) L1PA10|LINE|L1 95919 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 207-259 chr6 67972063 67972219 + 2 NA Intergenic Intergenic -83210 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 599-79 chr3 26289732 26290160 + 2 NA Intergenic Intergenic -332860 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 520-178 chr3 8368059 8368402 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 133428 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 178-38 chr12 97499477 97499614 + 2 NA intron (NR_024037, intron 7 of 8) MIRc|SINE|MIR 7636 NR_031653 100302289 NR_031653 ENSG00000221479 MIR1251 MIRN1251|hsa-mir-1251 microRNA 1251 ncRNA 295-308 chr3 123856264 123856455 + 2 NA intron (NM_001321309, intron 2 of 32) intron (NM_001321309, intron 2 of 32) 27973 NM_001321309 4638 Hs.477375 NM_005965 ENSG00000065534 MYLK AAT7|KRP|MLCK|MLCK1|MLCK108|MLCK210|MSTP083|MYLK1|smMLCK myosin light chain kinase protein-coding 383-329 chr5 161286935 161287159 + 2 NA Intergenic Intergenic 261077 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 275-313 chr6 70992682 70992886 + 2 NA Intergenic Intergenic -35724 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 729-2 chr1 72057971 72058577 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -221262 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 425-3 chr1 47607939 47608200 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -170752 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 323-59 chr10 65997861 65998034 + 2 NA intron (NM_001127384, intron 15 of 17) AluSp|SINE|Alu 426522 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 679-78 chr4 34290081 34290710 + 2 NA Intergenic MIR|SINE|MIR -20648 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 399-99 chr15 58026077 58026419 + 2 NA intron (NM_170696, intron 1 of 11) L1MA4A|LINE|L1 -12225 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 133-57 chr4 103758960 103759053 + 2 NA Intergenic Intergenic -39021 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 127-10 chr1 234462811 234462876 + 2 NA intron (NM_005646, intron 6 of 29) intron (NM_005646, intron 6 of 29) 16336 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 234-227 chr3 5545264 5545464 + 2 NA Intergenic L1MA8|LINE|L1 -295109 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 331-458 chr6 61919295 61919574 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 345304 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 310-143 chr14 84237785 84238021 + 2 NA Intergenic Intergenic -1034029 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 625-26 chr12 90823603 90824055 + 2 NA Intergenic AluJb|SINE|Alu -94194 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 319-424 chr5 118349990 118350212 + 2 NA TTS (NR_104610) TTS (NR_104610) 67527 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 300-132 chr15 79531664 79531927 + 2 NA Intergenic L1MA9|LINE|L1 99279 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 299-262 chr21 21548701 21548933 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 188502 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 864-8 chr13 37232552 37233119 + 2 NA Intergenic Intergenic -127171 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 225-125 chr17 51513019 51513179 + 2 NA Intergenic Charlie15a|DNA|hAT-Charlie 77672 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 729-47 chr21 33667327 33667989 + 2 NA intron (NM_001001132, intron 1 of 29) MIR|SINE|MIR 25157 NM_001331010 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 286-480 chr9 80495832 80496093 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 520939 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 199-81 chr17 59606965 59607090 + 2 NA intron (NM_024612, intron 17 of 17) intron (NM_024612, intron 17 of 17) -12662 NM_001288653 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 313-168 chr15 76823005 76823279 + 2 NA intron (NR_148227, intron 5 of 32) intron (NR_148227, intron 5 of 32) 38802 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 302-337 chr4 171453218 171453469 + 2 NA Intergenic MIRb|SINE|MIR 185420 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 278-358 chr6 6046539 6046771 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -39050 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 651-5 chr1 106776001 106776356 + 2 NA Intergenic L1M2|LINE|L1 -42061 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 848-3 chr1 221818496 221819126 + 2 NA Intergenic L1ME4a|LINE|L1 21855 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 474-265 chr7 42229574 42229932 + 2 NA intron (NM_000168, intron 1 of 14) intron (NM_000168, intron 1 of 14) 7456 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 523-177 chr3 36633047 36633380 + 2 NA Intergenic L1MA2|LINE|L1 106648 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 334-493 chr7 43204434 43204626 + 2 NA intron (NM_015052, intron 2 of 29) L2b|LINE|L2 53635 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 669-69 chr22 39740610 39741070 + 2 NA Intergenic L1MEd|LINE|L1 152920 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 291-337 chr4 179458871 179459028 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -1551013 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 387-160 chr2 18523678 18523983 + 2 NA Intergenic Intergenic 36823 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 273-40 chr10 16220683 16220858 + 2 NA Intergenic L1ME3C|LINE|L1 -216173 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 214-112 chr15 98309136 98309313 + 2 NA Intergenic AluSz|SINE|Alu 22334 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 366-485 chrX 77310988 77311271 + 2 NA Intergenic L1M2|LINE|L1 -136260 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 304-173 chr16 21336040 21336225 + 2 NA Intergenic L1M3|LINE|L1 -13231 NR_045011 100652781 Hs.443656 NM_001012391 SNX29P1 RUNDC2B|RUNDC2L sorting nexin 29 pseudogene 1 pseudo 418-138 chr2 236679585 236679904 + 2 NA Intergenic L1M5|LINE|L1 109919 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 326-61 chr10 35083736 35084018 + 2 NA intron (NM_001198777, intron 1 of 20) intron (NM_001198777, intron 1 of 20) -4197 NR_037405 100500890 NR_037405 ENSG00000266228 MIR3611 - microRNA 3611 ncRNA 393-336 chr7 91596128 91596425 + 2 NA Intergenic Intergenic 284426 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 269-396 chr8 59993670 59993906 + 2 NA Intergenic L1ME3A|LINE|L1 287612 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 254-35 chr10 24138491 24138637 + 2 NA intron (NM_001098500, intron 2 of 18) L1ME4a|LINE|L1 -70227 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 543-234 chr7 83066190 83066605 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 96487 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 200-137 chr2 115567580 115567733 + 2 NA intron (NM_001321912, intron 6 of 25) L1MC4|LINE|L1 223841 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 303-23 chr1 228254353 228254623 + 2 NA intron (NM_052843, intron 14 of 80) L1M5|LINE|L1 -40824 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 333-473 chr5 136846947 136847160 + 2 NA Intergenic L1MB1|LINE|L1 -281144 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 329-55 chr10 52533454 52533660 + 2 NA Intergenic Intergenic -63024 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 222-286 chr5 35266380 35266537 + 2 NA Intergenic Intergenic -35971 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 376-344 chr6 40089529 40089730 + 2 NA Intergenic Intergenic -155167 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 347-372 chr5 12679308 12679569 + 2 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) 11579 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 571-192 chrX 6435266 6435729 + 2 NA Intergenic L1MC4|LINE|L1 -51534 NR_039927 100616373 NR_039927 ENSG00000265284 MIR4770 - microRNA 4770 ncRNA 212-83 chr12 57844347 57844529 + 2 NA intron (NM_005730, intron 1 of 7) intron (NM_005730, intron 1 of 7) 2291 NM_005730 10106 Hs.524530 NM_005730 ENSG00000175215 CTDSP2 OS4|PSR2|SCP2 CTD small phosphatase 2 protein-coding 947-12 chr19 43850755 43851592 + 2 NA 3' UTR (NM_181845, exon 7 of 7) 3' UTR (NM_181845, exon 7 of 7) 23852 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 321-512 chr6 169536290 169536498 + 2 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 165635 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 229-51 chr10 121311378 121311563 + 2 NA Intergenic Intergenic 219844 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 239-219 chr21 19872562 19872788 + 2 NA Intergenic L1MB7|LINE|L1 27080 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 232-336 chr6 139045511 139045706 + 2 NA Intergenic Intergenic 16863 NM_021243 58527 Hs.600861 NM_021243 ENSG00000146386 ABRACL C6orf115|Costars|HSPC280|PRO2013 ABRA C-terminal like protein-coding 305-205 chr17 74694643 74694884 + 2 NA non-coding (NR_110298, exon 6 of 6) non-coding (NR_110298, exon 6 of 6) 18160 NM_001289083 146722 Hs.567706 NM_139018 ENSG00000186074 CD300LF CD300f|CLM-1|CLM1|IREM-1|IREM1|IgSF13|LMIR3|NKIR CD300 molecule like family member f protein-coding 159-99 chr8 144031607 144031716 + 2 NA intron (NM_198572, intron 1 of 4) L1MB7|LINE|L1 -17737 NR_158554 392275 NR_158554 SMPD5 MA-nSMase sphingomyelin phosphodiesterase 5 pseudo 229-282 chr4 133802175 133802389 + 2 NA Intergenic Intergenic 399507 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 439-34 chr10 61261738 61261997 + 2 NA Intergenic Intergenic -190772 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 263-367 chr6 119998236 119998438 + 2 NA Intergenic Intergenic -16842 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 238-385 chr8 85208580 85208722 + 2 NA intron (NM_001083588, intron 5 of 7) intron (NM_001083588, intron 5 of 7) 11723 NR_120681 401466 Hs.443072 NM_001099670 ENSG00000176731 RBIS C8orf59 ribosomal biogenesis factor protein-coding 362-400 chr7 27288688 27288960 + 2 NA Intergenic MIRb|SINE|MIR -41595 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 230-111 chr14 50739653 50739829 + 2 NA intron (NM_016350, intron 24 of 28) intron (NM_016350, intron 24 of 28) -71435 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 189-112 chr20 31449120 31449265 + 2 NA intron (NM_153324, intron 1 of 1) L1MEc|LINE|L1 8560 NR_126450 245936 Hs.122509 NM_153324 ENSG00000180424 DEFB123 DEFB-23|DEFB23|ESC42-RELD defensin beta 123 protein-coding 524-135 chr21 20225531 20225924 + 2 NA Intergenic Intergenic 32958 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 180-67 chr18 5164692 5164862 + 2 NA intron (NM_001330553, intron 1 of 1) MamSINE1|SINE|tRNA-RTE 32480 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 796-32 chr21 18178053 18178585 + 2 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -66514 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 517-193 chr4 64947337 64947792 + 2 NA intron (NR_033976, intron 2 of 6) L1ME5|LINE|L1 56936 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 423-293 chr8 82981830 82982134 + 2 NA Intergenic L1MC4a|LINE|L1 69878 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 323-375 chr4 79338624 79338917 + 2 NA Intergenic Intergenic -12709 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 254-242 chr3 60832864 60833043 + 2 NA intron (NM_001320900, intron 4 of 9) MER33|DNA|hAT-Charlie -215083 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 253-381 chr7 35860314 35860483 + 2 NA intron (NM_001363715, intron 3 of 13) L1M4|LINE|L1 59179 NM_001363715 989 Hs.191346 NM_001788 ENSG00000122545 SEPTIN7 CDC10|CDC3|NBLA02942|SEPT7|SEPT7A septin 7 protein-coding 274-105 chr12 123817791 123817942 + 2 NA intron (NM_207437, intron 20 of 77) L1MEg|LINE|L1 55371 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 603-22 chr11 21183016 21183469 + 2 NA intron (NM_201551, intron 13 of 18) L2b|LINE|L2 513656 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 453-275 chr8 61881544 61881837 + 2 NA Intergenic L1M3c|LINE|L1 -8149 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 235-87 chr12 86888963 86889119 + 2 NA Intergenic L1MA10|LINE|L1 -50041 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 265-8 chr1 70741853 70742024 + 2 NA intron (NR_125938, intron 5 of 6) L1PA16|LINE|L1 35485 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 286-434 chr7 109928054 109928263 + 2 NA Intergenic Intergenic 32055 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 358-14 chr1 158584568 158584820 + 2 NA Intergenic L1MDb|LINE|L1 -4795 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 204-186 chr22 48937059 48937259 + 2 NA Intergenic MIRc|SINE|MIR 70389 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 292-260 chr21 20517157 20517433 + 2 NA Intergenic Intergenic -258610 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 270-120 chr15 36322459 36322696 + 2 NA Intergenic L1MEf|LINE|L1 -257049 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 338-203 chr16 78635831 78636085 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 536304 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 280-308 chr5 9515532 9515761 + 2 NA intron (NR_109935, intron 2 of 2) intron (NR_109935, intron 2 of 2) 4313 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 332-521 chr8 66307281 66307576 + 2 NA Intergenic MIRb|SINE|MIR 115314 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 376-312 chr5 23292436 23292794 + 2 NA Intergenic L1PB1|LINE|L1 -214994 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 341-308 chr20 60918525 60918745 + 2 NA Intergenic Intergenic -160429 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 357-15 chr1 125005836 125006055 + 2 NA Intergenic ALR/Alpha|Satellite|centr 3486833 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 491-124 chr2 106790245 106790589 + 2 NA Intergenic Intergenic 95611 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 324-406 chr4 149628417 149628667 + 2 NA intron (NM_001363507, intron 7 of 13) L1M6|LINE|L1 187301 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 439-295 chr8 139992378 139992710 + 2 NA intron (NM_001160372, intron 18 of 22) L1ME3Cz|LINE|L1 107991 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 434-109 chr17 58174269 58174538 + 2 NA Intergenic L1M4|LINE|L1 4747 NM_001004707 124538 Hs.446879 NM_001004707 ENSG00000255713 OR4D2 BC2009|OR17-24 olfactory receptor family 4 subfamily D member 2 protein-coding 308-272 chr20 59212283 59212526 + 2 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 21384 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 302-23 chr1 179485591 179485744 + 2 NA intron (NR_073544, intron 17 of 25) L1PA13|LINE|L1 90281 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 353-483 chr7 36973136 36973336 + 2 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 11876 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 371-230 chr21 25017882 25018094 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 177438 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 586-117 chr5 23373979 23374317 + 2 NA Intergenic Intergenic -133461 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 559-37 chr12 64330213 64330723 + 2 NA intron (NM_001170633, intron 3 of 12) intron (NM_001170633, intron 3 of 12) 60290 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 278-318 chr4 109122842 109123064 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 179705 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 380-57 chr10 129564820 129565011 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 97674 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 339-516 chr6 169244729 169245047 + 2 NA intron (NM_003247, intron 5 of 22) intron (NM_003247, intron 5 of 22) 9226 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 327-140 chr13 93465192 93465510 + 2 NA intron (NM_005708, intron 1 of 8) Tigger1|DNA|TcMar-Tigger 238544 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 444-100 chr18 3683257 3683615 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 79699 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 129-65 chr5 18821677 18821750 + 2 NA Intergenic Intergenic 1014439 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 378-17 chr1 95700876 95701199 + 2 NA Intergenic Intergenic 190921 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 365-437 chrX 97530194 97530555 + 2 NA intron (NR_125391, intron 2 of 2) L1MEg|LINE|L1 34161 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 288-232 chr20 51325934 51326123 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy 126949 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 364-67 chr10 71419614 71419807 + 2 NA intron (NM_052836, intron 1 of 12) L1ME2z|LINE|L1 22776 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 401-284 chr6 62156119 62156478 + 2 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 129927 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 291-3 chr1 54847811 54848030 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 39275 NM_014762 1718 Hs.498727 NM_014762 ENSG00000116133 DHCR24 DCE|Nbla03646|SELADIN1|seladin-1 24-dehydrocholesterol reductase protein-coding 286-241 chr2 238988559 238988738 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -62379 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 232-274 chr4 99018542 99018709 + 2 NA intron (NM_015143, intron 1 of 10) HERVIP10B3-int|LTR|ERV1 21238 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 203-131 chr20 12601837 12601995 + 2 NA Intergenic Intergenic 335047 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 382-143 chr17 47297180 47297485 + 2 NA intron (NM_000212, intron 10 of 14) intron (NM_000212, intron 10 of 14) 26281 NR_110881 102724508 Hs.661005 NR_110880 ENSG00000263293 THCAT158 - thyroid cancer-associated transcript 158 ncRNA 256-364 chr6 94893803 94894011 + 2 NA Intergenic Intergenic 683544 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 1050-6 chr14 63982555 63983356 + 2 NA intron (NM_015180, intron 17 of 114) L1MB8|LINE|L1 112170 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 924-7 chr1 200580596 200581108 + 2 NA intron (NM_014875, intron 20 of 29) AluSg|SINE|Alu 37986 NM_001305792 9928 Hs.3104 NM_014875 ENSG00000118193 KIF14 MCPH20|MKS12 kinesin family member 14 protein-coding 217-126 chr15 81092692 81092836 + 2 NA Intergenic Intergenic -41506 NM_173528 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 310-190 chr17 72131997 72132183 + 2 NA Intergenic Intergenic 11070 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 414-360 chr9 137981174 137981446 + 2 NA intron (NM_001243812, intron 12 of 45) MLT1F2-int|LTR|ERVL-MaLR -34250 NR_132978 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 333-416 chr4 151964829 151965136 + 2 NA Intergenic L2b|LINE|L2 -135771 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 224-241 chr5 18417998 18418141 + 2 NA Intergenic Intergenic 610795 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 248-172 chr2 15520976 15521176 + 2 NA intron (NR_052013, intron 9 of 50) L2a|LINE|L2 40258 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 228-258 chr4 142745136 142745318 + 2 NA intron (NM_001331040, intron 1 of 25) L1M4a1|LINE|L1 101308 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 415-51 chr11 126504139 126504458 + 2 NA intron (NM_001301097, intron 4 of 15) L2a|LINE|L2 98211 NM_001254759 6484 Hs.591947 NM_006278 ENSG00000110080 ST3GAL4 CGS23|NANTA3|SAT3|SIAT4|SIAT4C|ST-4|ST3GalA.2|ST3GalIV|STZ|gal-NAc6S ST3 beta-galactoside alpha-2,3-sialyltransferase 4 protein-coding 189-101 chr2 195045021 195045151 + 2 NA Intergenic Intergenic 314491 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 320-539 chr8 58352873 58353184 + 2 NA Intergenic Intergenic -58236 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 434-26 chr1 225189572 225189929 + 2 NA intron (NM_001367479, intron 37 of 85) L1MB5|LINE|L1 238288 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 307-173 chr16 48147644 48147914 + 2 NA Intergenic Intergenic -1009 NM_033226 94160 Hs.410111 NM_033226 ENSG00000140798 ABCC12 MRP9 ATP binding cassette subfamily C member 12 protein-coding 371-359 chr7 37041257 37041617 + 2 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 43641 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 521-40 chr10 129227481 129227890 + 2 NA Intergenic Intergenic -239556 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 215-281 chr6 133604827 133604981 + 2 NA intron (NR_109982, intron 4 of 8) L1PA15|LINE|L1 -216243 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 526-7 chr1 169621650 169622107 + 2 NA intron (NM_003005, intron 1 of 16) intron (NM_003005, intron 1 of 16) 8246 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 317-383 chr5 36397290 36397545 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -95515 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 177-136 chr5 161403880 161404018 + 2 NA intron (NM_000813, intron 6 of 9) HAL1ME|LINE|L1 144175 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 386-16 chr1 194992183 194992405 + 2 NA Intergenic Intergenic 1096421 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 211-140 chr2 64237700 64237831 + 2 NA intron (NR_120420, intron 2 of 4) intron (NR_120420, intron 2 of 4) 9364 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 460-301 chr9 27990619 27990927 + 2 NA intron (NM_001354574, intron 5 of 5) MIRb|SINE|MIR -416907 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 373-228 chr2 215116509 215116736 + 2 NA intron (NR_103740, intron 1 of 54) L1MC4|LINE|L1 22004 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 213-167 chr21 34314310 34314480 + 2 NA Intergenic Intergenic -49629 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 455-181 chr4 43940532 43940870 + 2 NA Intergenic Intergenic -76160 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 394-223 chr3 137429905 137430143 + 2 NA Intergenic HAL1ME|LINE|L1 -334291 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 581-59 chr17 55900349 55900832 + 2 NA Intergenic MIRb|SINE|MIR 149485 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 187-130 chr4 68208388 68208515 + 2 NA intron (NR_104048, intron 2 of 9) L1MA5|LINE|L1 9629 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 302-414 chr7 61938671 61938870 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1365286 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 302-101 chr12 26734099 26734331 + 2 NA intron (NM_002223, intron 2 of 56) MIRb|SINE|MIR 98979 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 322-471 chr6 161879882 161880048 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 408988 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 144-21 chr12 112271664 112271785 + 2 NA intron (NM_001109662, intron 11 of 75) L1M4a2|LINE|L1 -108403 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 256-361 chr6 68862561 68862739 + 2 NA intron (NM_001704, intron 3 of 31) (TTTCT)n|Simple_repeat|Simple_repeat 227368 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 362-350 chr5 68723238 68723461 + 2 NA Intergenic AluJb|SINE|Alu 306578 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 456-86 chr14 38307693 38308096 + 2 NA Intergenic L1PA15|LINE|L1 -51801 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 375-371 chr7 34115249 34115473 + 2 NA intron (NM_133468, intron 14 of 15) L1MB8|LINE|L1 209822 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 515-143 chr20 40839107 40839509 + 2 NA Intergenic AluJb|SINE|Alu -124685 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 362-140 chr13 112914111 112914431 + 2 NA Intergenic L1MC4a|LINE|L1 54367 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 439-147 chr2 156192354 156192600 + 2 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 62454 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 229-14 chr1 112107292 112107420 + 2 NA Intergenic L1M3f|LINE|L1 116820 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 310-59 chr10 108279573 108279764 + 2 NA Intergenic L1ME1|LINE|L1 -210375 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 335-561 chr9 27542149 27542355 + 2 NA Intergenic MIR|SINE|MIR -12438 NM_024761 79817 Hs.369022 NM_024761 ENSG00000120162 MOB3B C9orf35|MOB1D|MOBKL2B MOB kinase activator 3B protein-coding 547-126 chr21 22999538 22999927 + 2 NA Intergenic Intergenic -79552 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 189-8 chr1 174628232 174628375 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -72236 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 200-145 chr2 197735236 197735396 + 2 NA intron (NM_033030, intron 10 of 10) HAL1|LINE|L1 29947 NM_138395 92935 Hs.744330 NM_138395 ENSG00000247626 MARS2 COXPD25|MetRS|mtMetRS methionyl-tRNA synthetase 2, mitochondrial protein-coding 368-159 chr15 46751221 46751562 + 2 NA Intergenic L1MCa|LINE|L1 -432698 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 387-40 chr10 62229371 62229612 + 2 NA intron (NM_145307, intron 6 of 11) intron (NM_145307, intron 6 of 11) 39353 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 305-525 chr8 46465877 46466136 + 2 NA Intergenic ALR/Alpha|Satellite|centr 151637 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 408-14 chr1 86792375 86792704 + 2 NA Intergenic L1MA10|LINE|L1 87963 NM_016009 51100 Hs.136309 NM_016009 ENSG00000097033 SH3GLB1 Bif-1|CGI-61|PPP1R70|dJ612B15.2 SH3 domain containing GRB2 like, endophilin B1 protein-coding 285-288 chr3 175669237 175669435 + 2 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 106997 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 271-37 chr10 9626940 9627115 + 2 NA Intergenic Intergenic -331434 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 333-117 chr12 71097644 71097971 + 2 NA Intergenic Intergenic 60002 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 336-321 chr20 40077861 40078058 + 2 NA Intergenic L1ME1|LINE|L1 73498 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 196-47 chr11 86648418 86648595 + 2 NA intron (NM_001014811, intron 1 of 13) L1PA7|LINE|L1 23692 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 420-223 chr5 19687419 19687660 + 2 NA intron (NM_001349562, intron 5 of 13) L1MA4A|LINE|L1 198733 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 248-202 chr2 123357875 123358078 + 2 NA Intergenic L1MD|LINE|L1 -284495 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 576-79 chr2 14732750 14733155 + 2 NA Intergenic Intergenic 100235 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 227-392 chr9 35185053 35185250 + 2 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 23142 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 273-176 chr17 72801580 72801788 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -161212 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 130-42 chr2 125075652 125075731 + 2 NA Intergenic L1MB7|LINE|L1 1042294 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 495-139 chr21 21208241 21208688 + 2 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 61302 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 249-88 chr12 34614773 34614973 + 2 NA Intergenic ALR/Alpha|Satellite|centr 592377 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 355-203 chr17_KI270729v1_random 25297 25611 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 214-90 chr13 57109410 57109558 + 2 NA Intergenic Intergenic -31434 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 338-357 chr3 175735253 175735514 + 2 NA intron (NM_207015, intron 11 of 13) THE1B-int|LTR|ERVL-MaLR 40950 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 322-113 chr12 13233492 13233750 + 2 NA Intergenic L2b|LINE|L2 36895 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 220-17 chr1 150955137 150955318 + 2 NA intron (NM_001366417, intron 14 of 21) intron (NM_001366417, intron 14 of 21) 19608 NM_022075 29956 Hs.744017 NM_013384 ENSG00000143418 CERS2 L3|LASS2|SP260|TMSG1 ceramide synthase 2 protein-coding 232-195 chr2 167707678 167707815 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -110926 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 291-96 chr12 40078664 40078919 + 2 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 27290 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 326-297 chr20 46735385 46735610 + 2 NA 3' UTR (NM_030777, exon 5 of 5) 3' UTR (NM_030777, exon 5 of 5) 25848 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 230-47 chr10 104375034 104375233 + 2 NA intron (NM_001008723, intron 7 of 17) intron (NM_001008723, intron 7 of 17) 21300 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 254-160 chr17 74284235 74284403 + 2 NA intron (NM_023036, intron 2 of 13) intron (NM_023036, intron 2 of 13) 10085 NR_148379 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 229-43 chr10 102866493 102866673 + 2 NA intron (NR_037644, intron 5 of 14) intron (NR_037644, intron 5 of 14) -2887 NM_020682 57412 Hs.720370 NM_020682 ENSG00000214435 AS3MT CYT19 arsenite methyltransferase protein-coding 550-221 chr7 112911435 112911800 + 2 NA intron (NM_152556, intron 2 of 4) L1MEg2|LINE|L1 28258 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 214-96 chr14 46130187 46130348 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 66108 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 230-358 chr7 99924715 99924905 + 2 NA intron (NM_181538, intron 1 of 1) L1MC3|LINE|L1 4810 NM_181538 349149 Hs.647524 NM_181538 ENSG00000176402 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein gamma 3 protein-coding 341-225 chr2 2883529 2883784 + 2 NA Intergenic AluJo|SINE|Alu 242370 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 292-458 chr9 28981342 28981520 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -92476 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 493-15 chr1 159429918 159430330 + 2 NA intron (NM_001363558, intron 3 of 3) intron (NM_001363558, intron 3 of 3) -2068 NR_145510 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 429-323 chr9 28577269 28577672 + 2 NA intron (NM_152570, intron 2 of 6) LTR8A|LTR|ERV1 141835 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 588-167 chr8 141952651 141953008 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -166516 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 235-221 chr22 37563785 37563958 + 2 NA intron (NM_152243, intron 1 of 2) intron (NM_152243, intron 1 of 2) 3391 NM_152243 11135 Hs.225356 NM_152243 ENSG00000128283 CDC42EP1 BORG5|CEP1|MSE55 CDC42 effector protein 1 protein-coding 488-199 chr4 147465762 147466139 + 2 NA Intergenic L1PA4|LINE|L1 -14967 NM_001166055 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 292-81 chr11 81721538 81721803 + 2 NA Intergenic L1MA3|LINE|L1 169166 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 308-387 chr5 84931883 84932075 + 2 NA Intergenic Intergenic -547099 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 554-50 chr11 91954558 91954940 + 2 NA Intergenic Intergenic -270285 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 447-236 chr6 144059672 144060022 + 2 NA intron (NM_001289040, intron 1 of 5) intron (NM_001289040, intron 1 of 5) -4585 NM_001317159 5325 Hs.743225 NM_002656 ENSG00000118495 PLAGL1 LOT1|ZAC|ZAC1 PLAG1 like zinc finger 1 protein-coding 260-289 chr3 152734013 152734238 + 2 NA Intergenic L1MB7|LINE|L1 -101006 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 229-125 chr15 54788572 54788739 + 2 NA Intergenic Intergenic -268092 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 182-82 chr2 18952097 18952232 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 74807 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 390-164 chr19 36622420 36622631 + 2 NA intron (NM_001256838, intron 4 of 4) MER77B|LTR|ERVL 17212 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 234-257 chr3 167000721 167000870 + 2 NA Intergenic HUERS-P2-int|LTR|ERV1 102112 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 482-302 chrX 47424417 47424769 + 2 NA Intergenic AluSz6|SINE|Alu 35943 NR_003710 100124540 Hs.693443 NR_003710 ENSG00000221459 SNORA11C - small nucleolar RNA, H/ACA box 11C snoRNA 128-74 chr8 31288517 31288606 + 2 NA Intergenic Intergenic -255205 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 590-159 chr7 80360692 80361130 + 2 NA Intergenic L2|LINE|L2 13528 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 186-159 chr8 76658286 76658431 + 2 NA intron (NR_024360, intron 2 of 3) intron (NR_024360, intron 2 of 3) -22889 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 386-180 chr2 107785456 107785763 + 2 NA intron (NR_126370, intron 2 of 4) intron (NR_126370, intron 2 of 4) 31497 NR_126369 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 246-284 chr4 18740131 18740302 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -718341 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 426-115 chr18 64759961 64760175 + 2 NA Intergenic L1PA15|LINE|L1 -500013 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 310-227 chr2 29516130 29516294 + 2 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) -40835 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 692-61 chr22 26725541 26726009 + 2 NA intron (NR_110543, intron 2 of 5) L1MB4|LINE|L1 52932 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 332-462 chr6 147947305 147947552 + 2 NA Intergenic Intergenic -324900 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 291-376 chr6 49167117 49167398 + 2 NA Intergenic L1MA6|LINE|L1 295996 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 257-353 chr6 64308337 64308547 + 2 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 501606 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 304-162 chr15 61636894 61637095 + 2 NA Intergenic Intergenic -92924 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 287-250 chr3 84773497 84773777 + 2 NA intron (NR_033860, intron 10 of 20) L1MA4|LINE|L1 95938 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 385-319 chr6 40053059 40053296 + 2 NA Intergenic LTR43|LTR|ERV1 -118715 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 295-503 chr9 96082468 96082684 + 2 NA intron (NR_033838, intron 1 of 8) intron (NR_033838, intron 1 of 8) 16737 NR_033838 158435 Hs.652615 NR_033838 LOC158435 - uncharacterized LOC158435 ncRNA 283-130 chr14 60529954 60530206 + 2 NA Intergenic L3|LINE|CR1 20934 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 258-8 chr1 96023592 96023797 + 2 NA TTS (NR_125991) TTS (NR_125991) 31626 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 298-231 chr2 138865172 138865325 + 2 NA Intergenic Intergenic -32076 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 381-20 chr1 186270342 186270575 + 2 NA Intergenic L1MD1|LINE|L1 -25815 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 251-52 chr11 40302258 40302461 + 2 NA intron (NM_001258419, intron 4 of 6) intron (NM_001258419, intron 4 of 6) -9229 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 427-245 chr7 47243585 47243892 + 2 NA Intergenic (AAATA)n|Simple_repeat|Simple_repeat 221065 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 413-156 chr2 183029141 183029494 + 2 NA intron (NM_205842, intron 1 of 31) intron (NM_205842, intron 1 of 31) 9140 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 477-37 chr10 53407379 53407821 + 2 NA Intergenic MIR|SINE|MIR -635900 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 172-147 chr9 119018876 119019027 + 2 NA Intergenic Intergenic 339280 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 564-72 chr17 33698799 33699207 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -165243 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 258-328 chr5 105696306 105696485 + 2 NA Intergenic Intergenic 596921 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 620-20 chr10 130744262 130744830 + 2 NA Intergenic Intergenic 218122 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 371-59 chr10 123333506 123333747 + 2 NA Intergenic L1ME1|LINE|L1 179224 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 276-458 chr8 107639398 107639664 + 2 NA Intergenic Intergenic -141613 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 221-310 chr8 129352625 129352800 + 2 NA non-coding (NR_130919, exon 4 of 4) non-coding (NR_130919, exon 4 of 4) -111472 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 350-443 chr6 68148144 68148329 + 2 NA Intergenic Intergenic 92885 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 478-5 chr1 66311903 66312348 + 2 NA intron (NM_001037340, intron 5 of 14) intron (NM_001037340, intron 5 of 14) -19983 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 295-143 chr14_GL000225v1_random 86462 86630 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 343-367 chr3 175775264 175775543 + 2 NA intron (NR_046714, intron 1 of 2) intron (NR_046714, intron 1 of 2) 930 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 165-37 chr15 71257960 71258081 + 2 NA intron (NM_024817, intron 5 of 16) intron (NM_024817, intron 5 of 16) -68961 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 419-116 chr17 68405357 68405735 + 2 NA intron (NM_001352910, intron 11 of 12) L1M3|LINE|L1 -8077 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 706-34 chr18 1947386 1947858 + 2 NA Intergenic Intergenic -587993 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 535-29 chr10 82997375 82997820 + 2 NA Intergenic AluSz|SINE|Alu 679492 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 252-194 chr2 75496646 75496827 + 2 NA intron (NM_032181, intron 3 of 3) L1PA16|LINE|L1 -27332 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 337-468 chr5 156913995 156914230 + 2 NA Intergenic Intergenic 49114 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 330-496 chr7 86055156 86055347 + 2 NA Intergenic L1PA15-16|LINE|L1 -588658 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 847-16 chr13 98873014 98873590 + 2 NA intron (NM_001366682, intron 27 of 53) intron (NM_001366682, intron 27 of 53) 41218 NR_046663 100874096 Hs.578066 NR_046663 ENSG00000229918 DOCK9-AS1 - DOCK9 antisense RNA 1 ncRNA 335-478 chr6 151518393 151518623 + 2 NA intron (NM_025059, intron 1 of 10) MER41B|LTR|ERV1 24491 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 167-11 chr1 179477128 179477281 + 2 NA intron (NR_073544, intron 16 of 25) L1MB7|LINE|L1 98744 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 514-56 chr12 20907770 20908172 + 2 NA intron (NM_001371097, intron 13 of 15) intron (NM_001371097, intron 13 of 15) 85423 NM_001349920 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 550-237 chr8 134229973 134230321 + 2 NA Intergenic Intergenic 343651 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 634-126 chr5 82865964 82866422 + 2 NA Intergenic Intergenic -6357 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 343-52 chr10 55193914 55194099 + 2 NA intron (NM_001354404, intron 2 of 34) MIRb|SINE|MIR -392715 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 149-63 chr22 49560443 49560588 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -17049 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 144-18 chr11 102857897 102858011 + 2 NA Intergenic Intergenic -14345 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 501-257 chr8 75054227 75054608 + 2 NA Intergenic Intergenic 54262 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 476-121 chr18 59253493 59253798 + 2 NA Intergenic AluSx|SINE|Alu 19809 NM_013435 30062 Hs.278957 NM_013435 ENSG00000134438 RAX MCOP3|RX retina and anterior neural fold homeobox protein-coding 530-254 chr8 100890354 100890735 + 2 NA Intergenic AluSq2|SINE|Alu 60027 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 556-95 chr2 2928116 2928533 + 2 NA intron (NR_110228, intron 5 of 6) L1MCb|LINE|L1 197702 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 156-50 chr2 51355801 51355912 + 2 NA intron (NR_135237, intron 3 of 10) MIR|SINE|MIR 323255 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 280-11 chr1 76394544 76394793 + 2 NA intron (NM_001349111, intron 3 of 5) intron (NM_001349111, intron 3 of 5) 319922 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 339-432 chr4 173625106 173625377 + 2 NA Intergenic L1M2|LINE|L1 94783 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 327-536 chrX 66158760 66159012 + 2 NA Intergenic L1ME4b|LINE|L1 -3785 NM_138737 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 229-231 chr20 58062228 58062406 + 2 NA Intergenic L1MEc|LINE|L1 58413 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 207-124 chr19 57170227 57170395 + 2 NA Intergenic L1MA9|LINE|L1 -2826 NM_001012729 503835 Hs.585857 NM_001012729 ENSG00000258873 DUXA - double homeobox A protein-coding 473-6 chr1 75591050 75591374 + 2 NA intron (NM_152697, intron 1 of 23) L1MA1|LINE|L1 19902 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 338-368 chr4 17989735 17989966 + 2 NA intron (NR_158566, intron 1 of 5) MLT1E3|LTR|ERVL-MaLR 31905 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 493-21 chr1 229755754 229756156 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 129708 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 243-214 chr2 82580589 82580775 + 2 NA Intergenic L1M5|LINE|L1 -276121 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 675-88 chr7 52710640 52711297 + 2 NA Intergenic L1MCa|LINE|L1 -324665 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 206-166 chr3 88928697 88928840 + 2 NA Intergenic Intergenic -178853 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 208-287 chr9 125454375 125454525 + 2 NA intron (NM_001006619, intron 9 of 10) intron (NM_001006619, intron 9 of 10) 192624 NM_001354299 26130 Hs.42376 NM_015635 ENSG00000165219 GAPVD1 GAPEX5|GAPex-5|RAP6 GTPase activating protein and VPS9 domains 1 protein-coding 442-234 chr5 102344799 102345187 + 2 NA Intergenic PRIMA41-int|LTR|ERV1 -48709 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 232-59 chr11 48484437 48484610 + 2 NA Intergenic L2|LINE|L2 -4270 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 308-281 chr22 34898086 34898281 + 2 NA intron (NR_138042, intron 2 of 4) L1ME4a|LINE|L1 99733 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 243-305 chr3 155505701 155505939 + 2 NA intron (NM_001349252, intron 12 of 24) MIR3|SINE|MIR 20017 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 579-125 chr4 171893697 171894228 + 2 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -80355 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 469-169 chr3 11225385 11225823 + 2 NA promoter-TSS (NM_001098211) promoter-TSS (NM_001098211) -377 NM_001098211 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 207-206 chr3 189574383 189574559 + 2 NA Intergenic Intergenic -22275 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 578-114 chr3 85692013 85692363 + 2 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -34294 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 291-398 chr7 16510525 16510732 + 2 NA Intergenic MIR|SINE|MIR -16197 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 603-149 chr7 20839527 20840097 + 2 NA intron (NR_126381, intron 1 of 5) intron (NR_126381, intron 1 of 5) 4381 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 202-231 chr7 3113947 3114097 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 44551 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 221-195 chr3 100733167 100733355 + 2 NA intron (NM_001007565, intron 5 of 7) L1M4a1|LINE|L1 23719 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 252-23 chr1 208658075 208658322 + 2 NA Intergenic Intergenic -70490 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 355-376 chr4 106393344 106393666 + 2 NA Intergenic Intergenic -26070 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 298-284 chr3 358733 358999 + 2 NA intron (NM_001253388, intron 9 of 24) intron (NM_001253388, intron 9 of 24) 26929 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 633-120 chr8 61359346 61359935 + 2 NA intron (NM_173519, intron 2 of 5) AluSx|SINE|Alu 71670 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 482-254 chr7 82571500 82571813 + 2 NA Intergenic Intergenic -127700 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 208-112 chr2 34217520 34217697 + 2 NA intron (NR_126403, intron 4 of 5) MIR|SINE|MIR 150382 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 138-18 chr13 69011981 69012076 + 2 NA Intergenic Intergenic -126703 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 338-575 chr8 142884490 142884679 + 2 NA Intergenic L1MA8|LINE|L1 -4764 NM_000497 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 330-69 chr10 103221307 103221565 + 2 NA Intergenic AluSq2|SINE|Alu -24451 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 417-304 chr9 76605920 76606222 + 2 NA Intergenic LTR37B|LTR|ERV1 86344 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 297-10 chr1 58826537 58826812 + 2 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 41523 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 254-457 chrX 152224130 152224357 + 2 NA intron (NM_000808, intron 6 of 9) L5|LINE|RTE-X -85665 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 215-289 chr7 11380808 11380940 + 2 NA intron (NM_015204, intron 23 of 26) intron (NM_015204, intron 23 of 26) 407002 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 358-241 chr2 198390376 198390686 + 2 NA Intergenic Intergenic -15434 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 874-28 chr7 94151326 94151920 + 2 NA Intergenic L1MB8|LINE|L1 -147268 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 369-324 chr5 44328048 44328323 + 2 NA intron (NM_004465, intron 1 of 2) intron (NM_004465, intron 1 of 2) -60547 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 467-78 chr14 48853602 48854027 + 2 NA Intergenic Intergenic 732566 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 367-244 chr20 6625793 6626064 + 2 NA Intergenic L1ME1|LINE|L1 110208 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 210-238 chr5 165508982 165509169 + 2 NA Intergenic L1M4|LINE|L1 1038796 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 301-338 chr4 154875999 154876213 + 2 NA Intergenic MER4C|LTR|ERV1 94601 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 353-132 chr13 107092174 107092470 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 228641 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 528-102 chr16 8278697 8279122 + 2 NA Intergenic Intergenic 310929 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 547-245 chr8 115676399 115676770 + 2 NA Intergenic Intergenic -7609 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 168-124 chr9 8330949 8331070 + 2 NA intron (NM_130392, intron 29 of 30) intron (NM_130392, intron 29 of 30) 402937 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 209-177 chr20 60546518 60546688 + 2 NA Intergenic L1MA3|LINE|L1 -17959 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 315-302 chr3 11602206 11602403 + 2 NA intron (NM_014667, intron 2 of 5) intron (NM_014667, intron 2 of 5) 2277 NM_001284391 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 342-459 chr6 72976808 72976999 + 2 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) -9150 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 271-69 chr11 39769813 39770023 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 523212 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 337-227 chr18 74943559 74943814 + 2 NA intron (NM_017757, intron 7 of 7) intron (NM_017757, intron 7 of 7) 261827 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 271-156 chr16 72120710 72120901 + 2 NA intron (NM_001160213, intron 20 of 21) MIR|SINE|MIR -26427 NM_001142318 54957 Hs.134406 NM_017853 ENSG00000140830 TXNL4B DLP|Dim2 thioredoxin like 4B protein-coding 224-221 chr4 61876492 61876649 + 2 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 285195 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 313-272 chr2 115554721 115554972 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 211031 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 365-405 chr8 109226254 109226488 + 2 NA Intergenic HAL1|LINE|L1 103562 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 173-102 chr4 91825621 91825790 + 2 NA Intergenic L1MB1|LINE|L1 451597 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 501-157 chr3 26035162 26035576 + 2 NA Intergenic Intergenic -161674 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 268-222 chr20 11881100 11881284 + 2 NA Intergenic Helitron1Nb_Mam|RC|Helitron -9531 NM_001282552 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 146-37 chr18 13886602 13886701 + 2 NA intron (NM_001291911, intron 1 of 1) intron (NM_001291911, intron 1 of 1) 28885 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 239-269 chr4 30873953 30874081 + 2 NA intron (NM_032457, intron 1 of 2) L1PA3|LINE|L1 153648 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 498-39 chr10 96011273 96011711 + 2 NA intron (NM_001159747, intron 4 of 11) MIRb|SINE|MIR 11401 NM_001001732 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 571-56 chr16 13007361 13007768 + 2 NA intron (NM_001145204, intron 2 of 4) L2|LINE|L2 105966 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 324-260 chr2 57565521 57565706 + 2 NA Intergenic L2|LINE|L2 -342038 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 293-294 chr4 33057128 33057309 + 2 NA Intergenic Intergenic 706180 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 304-119 chr12 87581567 87581843 + 2 NA Intergenic MIRc|SINE|MIR -187107 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 232-223 chr21 26635550 26635749 + 2 NA Intergenic Intergenic -62363 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 366-442 chr8 86284001 86284339 + 2 NA Intergenic Intergenic -53789 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 380-74 chr11 96477642 96477984 + 2 NA intron (NR_047481, intron 1 of 4) L1MA4A|LINE|L1 29064 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 329-396 chr4 22929381 22929654 + 2 NA Intergenic Intergenic 215428 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 333-480 chr5 155245405 155245711 + 2 NA Intergenic L1PB2|LINE|L1 231803 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 246-5 chr1 68075965 68076131 + 2 NA intron (NR_040077, intron 3 of 9) L1PA15|LINE|L1 -24417 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 269-211 chr2 153726069 153726314 + 2 NA Intergenic Intergenic -145731 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 342-24 chr1 108172563 108172802 + 2 NA intron (NM_013386, intron 3 of 9).2 MSTB|LTR|ERVL-MaLR 20153 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 320-537 chr8 53676586 53676851 + 2 NA Intergenic L1MB5|LINE|L1 -152753 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 242-308 chr5 82326712 82326941 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 47364 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 195-68 chr15 26284440 26284565 + 2 NA Intergenic L1MA9|LINE|L1 168689 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 224-215 chr4 18455762 18455920 + 2 NA Intergenic Intergenic -433966 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 300-80 chr11 130926106 130926270 + 2 NA Intergenic L1MEd|LINE|L1 -9701 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 427-249 chr7 92804042 92804375 + 2 NA intron (NM_001259, intron 2 of 7) intron (NM_001259, intron 2 of 7) 29751 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 344-2 chr1 13467869 13468063 + 2 NA Intergenic AluSx|SINE|Alu 46037 NM_001010847 126755 Hs.657356 NM_001010847 ENSG00000162494 LRRC38 - leucine rich repeat containing 38 protein-coding 298-145 chr15 83960197 83960429 + 2 NA intron (NM_207517, intron 19 of 29) intron (NM_207517, intron 19 of 29) -119874 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 293-89 chr12 80564448 80564618 + 2 NA intron (NM_001145026, intron 25 of 44) intron (NM_001145026, intron 25 of 44) 120298 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 367-84 chr11 121187830 121188174 + 2 NA intron (NM_005422, intron 20 of 22) intron (NM_005422, intron 20 of 22) 85336 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 212-184 chr20 4574561 4574712 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -111820 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 390-260 chr4 24181183 24181549 + 2 NA intron (NR_148982, intron 1 of 13) MIR|SINE|MIR -291319 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 391-243 chr3 152520063 152520445 + 2 NA Intergenic L1ME4b|LINE|L1 -179264 NR_132656 645843 Hs.632562 NM_001123228 ENSG00000221962 TMEM14EP TMEM14E transmembrane protein 14E, pseudogene pseudo 562-154 chr3 186672562 186672949 + 2 NA intron (NM_000412, intron 4 of 6) intron (NM_000412, intron 4 of 6) 6803 NM_000412 3273 Hs.1498 NM_000412 ENSG00000113905 HRG HPRG|HRGP|THPH11 histidine rich glycoprotein protein-coding 220-9 chr1 78739887 78740068 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 90146 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 410-196 chr3 95728818 95729147 + 2 NA Intergenic L1PA16|LINE|L1 -45789 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 399-20 chr1 200693285 200693619 + 2 NA intron (NR_110787, intron 2 of 2) MLT1K|LTR|ERVL-MaLR -23454 NM_001349803 83479 Hs.497332 NM_031306 ENSG00000118197 DDX59 OFD5|ZNHIT5 DEAD-box helicase 59 protein-coding 605-113 chr7 81289662 81289994 + 2 NA Intergenic Intergenic 271991 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 321-468 chr5 80088876 80089076 + 2 NA Intergenic MamRep1151|LTR?|LTR? -5311 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 525-242 chr7 69327599 69327974 + 2 NA Intergenic AluJr|SINE|Alu 269838 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 609-146 chrX 42290297 42290856 + 2 NA Intergenic L1MEf|LINE|L1 -367022 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 565-79 chr2 63645675 63646102 + 2 NA Intergenic L1MA2|LINE|L1 56737 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 373-262 chr3 100786377 100786598 + 2 NA intron (NM_001349331, intron 32 of 42) intron (NM_001349331, intron 32 of 42) 76945 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 330-332 chr21 31439907 31440124 + 2 NA intron (NM_001353690, intron 1 of 27) MIR|SINE|MIR -95661 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 414-113 chr16 83109819 83110140 + 2 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -119681 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 249-142 chr16 60708825 60709051 + 2 NA Intergenic Intergenic 346828 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 391-241 chr3 135442456 135442692 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -523154 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 567-112 chr3 39041674 39042052 + 2 NA intron (NM_001349253, intron 1 of 29) L1MA5|LINE|L1 10081 NM_001349253 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 632-16 chr11 82655019 82655472 + 2 NA Intergenic HAL1|LINE|L1 78619 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 286-479 chr9 79349635 79349876 + 2 NA Intergenic Intergenic -204089 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 353-150 chr14 77423191 77423453 + 2 NA promoter-TSS (NM_001113475) promoter-TSS (NM_001113475) -266 NM_001113475 122945 Hs.97556 NM_138791 ENSG00000165555 NOXRED1 C14orf148 NADP dependent oxidoreductase domain containing 1 protein-coding 334-316 chr21 21344061 21344252 + 2 NA intron (NM_001352592, intron 9 of 18) L1MA1|LINE|L1 196994 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 372-2 chr1 13691334 13691667 + 2 NA Intergenic Intergenic -8688 NM_001135610 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 194-98 chr2 149934960 149935121 + 2 NA Intergenic Intergenic -75849 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 738-45 chr4 64006329 64006896 + 2 NA Intergenic Intergenic 402838 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 484-111 chr2 9524672 9525040 + 2 NA intron (NM_003183, intron 6 of 18) intron (NM_003183, intron 6 of 18) 30974 NM_003183 6868 Hs.404914 NM_003183 ENSG00000151694 ADAM17 ADAM18|CD156B|CSVP|NISBD|NISBD1|TACE ADAM metallopeptidase domain 17 protein-coding 276-375 chr5 97695408 97695583 + 2 NA Intergenic L1MA3|LINE|L1 -145263 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 319-338 chr3 99376335 99376513 + 2 NA Intergenic L1M2|LINE|L1 -262170 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 369-201 chr2 98315785 98316138 + 2 NA Intergenic L1MEc|LINE|L1 -30194 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 387-201 chr20 24935272 24935553 + 2 NA Intergenic Intergenic -13857 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 179-128 chr8 138992479 138992591 + 2 NA Intergenic L1ME5|LINE|L1 -78494 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 324-110 chr12 16675735 16675953 + 2 NA Intergenic L1MC1|LINE|L1 -67630 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 337-380 chr4 17694425 17694743 + 2 NA intron (NM_015688, intron 5 of 17) intron (NM_015688, intron 5 of 17) 79943 NM_025205 80306 Hs.731966 NM_025205 ENSG00000118579 MED28 1500003D12Rik|EG1|magicin mediator complex subunit 28 protein-coding 350-150 chr14 101375977 101376182 + 2 NA Intergenic L1MEd|LINE|L1 31843 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 263-227 chr2 241026549 241026754 + 2 NA intron (NM_001080437, intron 1 of 31) L1MA9|LINE|L1 28033 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 561-191 chr7 108815158 108815557 + 2 NA Intergenic L2c|LINE|L2 69230 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 280-342 chr6 16148732 16148950 + 2 NA TTS (NM_013262) TTS (NM_013262) 7285 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 305-457 chr5 163327086 163327282 + 2 NA Intergenic Intergenic -110387 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 320-269 chr2 107177436 107177704 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 171955 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 336-373 chr3 102121939 102122221 + 2 NA Intergenic L1MA9|LINE|L1 -41625 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 337-419 chr4 166590421 166590698 + 2 NA Intergenic Intergenic 643867 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 365-20 chr1 147234377 147234705 + 2 NA intron (NM_001348451, intron 2 of 23) intron (NM_001348451, intron 2 of 23) -8143 NR_145689 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 656-83 chr4 64231592 64232083 + 2 NA Intergenic LTR25-int|LTR|ERV1 177613 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 258-375 chr7 101908136 101908301 + 2 NA intron (NM_181552, intron 1 of 23) intron (NM_181552, intron 1 of 23) 90592 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 250-320 chr4 116162826 116162997 + 2 NA Intergenic L1MC2|LINE|L1 -136814 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 311-506 chr8 87210752 87210907 + 2 NA intron (NM_173538, intron 5 of 10) MSTA-int|LTR|ERVL-MaLR 344414 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 594-137 chr7 19485546 19486113 + 2 NA Intergenic Intergenic 219607 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 724-40 chr2 173346179 173346791 + 2 NA Intergenic L1MB4|LINE|L1 -8387 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 223-312 chr7 11786252 11786407 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 45869 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 217-81 chr11 106907043 106907247 + 2 NA intron (NM_001256424, intron 4 of 8) MER65D|LTR|ERV1 111331 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 501-136 chr20 53115388 53115791 + 2 NA intron (NM_173485, intron 1 of 2) THE1B|LTR|ERVL-MaLR -69694 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 329-310 chr2 219275938 219276173 + 2 NA Intergenic L1ME4b|LINE|L1 -3311 NM_001039550 3300 Hs.77768 NM_006736 ENSG00000135924 DNAJB2 CMT2T|DSMA5|HSJ-1|HSJ1|HSPF3 DnaJ heat shock protein family (Hsp40) member B2 protein-coding 272-378 chr6 39663222 39663393 + 2 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 62101 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 292-47 chr10 64209804 64210005 + 2 NA Intergenic Intergenic -615624 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 360-76 chr11 127900202 127900478 + 2 NA Intergenic Intergenic -308426 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 535-48 chr12 19076947 19077420 + 2 NA Intergenic (TTTTA)n|Simple_repeat|Simple_repeat -52550 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 489-123 chr2 18762689 18762969 + 2 NA Intergenic Intergenic -173249 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 267-16 chr1 95559311 95559473 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 49276 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 434-93 chr15 62194291 62194556 + 2 NA Intergenic Intergenic 8895 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 222-383 chr8 140776784 140776908 + 2 NA intron (NR_148036, intron 14 of 34) L2a|LINE|L2 -44193 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 418-5 chr1 95008546 95008855 + 2 NA intron (NM_144988, intron 3 of 3) L1MB4|LINE|L1 -52896 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 393-373 chr8 138055604 138055985 + 2 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 27751 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 402-190 chr20 63389576 63389810 + 2 NA Intergenic L1MCc|LINE|L1 -28297 NM_000744 1137 Hs.10734 NM_000744 ENSG00000101204 CHRNA4 BFNC|EBN|EBN1|NACHR|NACHRA4|NACRA4 cholinergic receptor nicotinic alpha 4 subunit protein-coding 326-527 chr8 79214564 79214883 + 2 NA Intergenic MLT2C2|LTR|ERVL -117465 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 273-53 chr10 55414304 55414510 + 2 NA intron (NM_001354404, intron 2 of 34) L1M3|LINE|L1 -184635 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 178-74 chr2 226462937 226463027 + 2 NA Intergenic L1ME1|LINE|L1 195811 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 314-521 chr7 18227671 18227880 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -62317 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 315-256 chr2 127410005 127410201 + 2 NA Intergenic Intergenic -8317 NM_000312 5624 Hs.224698 NM_000312 ENSG00000115718 PROC APC|PC|PROC1|THPH3|THPH4 protein C, inactivator of coagulation factors Va and VIIIa protein-coding 213-203 chr4 60471692 60471857 + 2 NA Intergenic L1PA16|LINE|L1 -450845 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 353-247 chr2 80180410 80180599 + 2 NA intron (NM_001282598, intron 7 of 17) HERVL-int|LTR|ERVL 124248 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 537-161 chr4 2736462 2736852 + 2 NA Intergenic L1M4b|LINE|L1 19679 NM_024309 79155 Hs.368551 NM_024309 ENSG00000168884 TNIP2 ABIN2|FLIP1|KLIP TNFAIP3 interacting protein 2 protein-coding 322-437 chr5 107027722 107027920 + 2 NA Intergenic Intergenic -16807 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 256-22 chr1 163818414 163818655 + 2 NA Intergenic (AGAATGA)n|Simple_repeat|Simple_repeat -395343 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 555-155 chr5 9849698 9850182 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -4437 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 400-345 chr8 105191905 105192267 + 2 NA Intergenic L1MA3|LINE|L1 -126352 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 391-270 chr4 144876143 144876519 + 2 NA Intergenic L1MB2|LINE|L1 221051 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 247-92 chr12 69658398 69658635 + 2 NA intron (NM_001282613, intron 7 of 7) intron (NM_001282613, intron 7 of 7) 30761 NR_104220 144453 Hs.280782 NM_032735 ENSG00000127325 BEST3 VMD2L3 bestrophin 3 protein-coding 428-249 chr6 5324096 5324342 + 2 NA intron (NM_006567, intron 1 of 6) intron (NM_006567, intron 1 of 6) 62706 NM_006567 10667 Hs.484547 NM_006567 ENSG00000145982 FARS2 COXPD14|FARS1|HSPC320|PheRS|SPG77|mtPheRS phenylalanyl-tRNA synthetase 2, mitochondrial protein-coding 411-176 chr3 42580879 42581149 + 2 NA promoter-TSS (NM_016305) promoter-TSS (NM_016305) -826 NM_016305 51188 Hs.534454 NM_016305 ENSG00000008324 SS18L2 KIAA-iso SS18 like 2 protein-coding 553-105 chr2 27956622 27957024 + 2 NA intron (NM_199193, intron 4 of 13) Plat_L3|LINE|CR1 -39544 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 264-346 chr5 165654946 165655094 + 2 NA Intergenic MIRc|SINE|MIR 1184741 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 500-170 chr20 54733285 54733576 + 2 NA Intergenic L2c|LINE|L2 257837 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 113-40 chr5 111676516 111676595 + 2 NA intron (NR_040093, intron 2 of 6) L3|LINE|CR1 79696 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 373-352 chr6 19258655 19258887 + 2 NA Intergenic Intergenic -78291 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 527-61 chr12 50247025 50247504 + 2 NA intron (NM_016357, intron 2 of 10) MLT1G1|LTR|ERVL-MaLR -13052 NR_031625 100302220 NR_031625 ENSG00000221604 MIR1293 MIRN1293|hsa-mir-1293|mir-1293 microRNA 1293 ncRNA 320-576 chr8 132238682 132238909 + 2 NA intron (NM_004519, intron 1 of 14) MLT1O|LTR|ERVL-MaLR -133530 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 390-92 chr14 54528443 54528716 + 2 NA intron (NM_006568, intron 2 of 5) intron (NM_006568, intron 2 of 5) 18673 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 272-16 chr1 167737113 167737289 + 2 NA intron (NM_024569, intron 1 of 4) L2b|LINE|L2 15219 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 491-279 chr9 112931052 112931453 + 2 NA Intergenic Intergenic -40376 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 561-109 chr20 7246583 7247059 + 2 NA intron (NR_110609, intron 2 of 7) intron (NR_110609, intron 2 of 7) 7381 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 381-147 chr18 7650617 7650873 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 83429 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 233-126 chr17 39183347 39183565 + 2 NA intron (NM_199248, intron 11 of 12) intron (NM_199248, intron 11 of 12) 14213 NM_000723 782 Hs.635 NM_000723 ENSG00000067191 CACNB1 CAB1|CACNLB1|CCHLB1 calcium voltage-gated channel auxiliary subunit beta 1 protein-coding 311-452 chr6 148051306 148051559 + 2 NA Intergenic L2|LINE|L2 -220896 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 324-417 chr5 14551071 14551343 + 2 NA Intergenic Intergenic -30585 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 484-129 chr2 63301370 63301760 + 2 NA intron (NR_148704, intron 14 of 18) HUERS-P3b-int|LTR|ERV1 136442 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 307-21 chr1 119255550 119255722 + 2 NA intron (NR_125975, intron 4 of 6) L1ME4b|LINE|L1 -72616 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 588-12 chr10 78344453 78345007 + 2 NA Intergenic L1MB8|LINE|L1 77388 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 479-123 chr20 9438718 9439116 + 2 NA intron (NM_000933, intron 26 of 35) intron (NM_000933, intron 26 of 35) -75441 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 259-281 chr4 44939359 44939564 + 2 NA Intergenic Intergenic -212827 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 431-44 chr10 67428165 67428428 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) -24886 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 345-335 chr22 49579923 49580263 + 2 NA intron (NR_110523, intron 1 of 4) L1MD|LINE|L1 -36627 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 219-285 chr5 68527798 68527953 + 2 NA Intergenic L1MC|LINE|L1 235298 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 320-197 chr16 82390762 82390957 + 2 NA Intergenic Intergenic -220635 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 337-302 chr20 8993239 8993541 + 2 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat -75664 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 371-139 chr16 78176676 78176912 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 77140 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 520-311 chr8 131589542 131589967 + 2 NA Intergenic Intergenic -314339 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 569-52 chr13 54140617 54141131 + 2 NA Intergenic L2a|LINE|L2 -8003 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 451-146 chr3 86307293 86307653 + 2 NA Intergenic L2b|LINE|L2 -174470 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 275-367 chr8 124755491 124755684 + 2 NA Intergenic Intergenic -27080 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 318-24 chr1 110853940 110854109 + 2 NA Intergenic Intergenic -17175 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 342-111 chr12 37236098 37236305 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1080573 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 455-293 chr8 141838913 141839228 + 2 NA Intergenic L1MEf|LINE|L1 -52757 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 189-187 chr7 55207218 55207358 + 2 NA 3' UTR (NM_001346900, exon 28 of 28) 3' UTR (NM_001346900, exon 28 of 28) -18339 NR_047551 100507500 Hs.720489 NR_047551 ENSG00000224057 EGFR-AS1 - EGFR antisense RNA 1 ncRNA 302-258 chr21 23205132 23205307 + 2 NA Intergenic AluSx|SINE|Alu 125935 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 351-336 chr4 28968935 28969242 + 2 NA Intergenic MIR|SINE|MIR -27696 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 185-146 chr4 55333156 55333259 + 2 NA Intergenic L1ME3|LINE|L1 -13035 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 298-448 chr8 28260630 28260926 + 2 NA Intergenic LTR43B|LTR|ERV1 -56490 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 197-72 chr16 72366897 72367037 + 2 NA intron (NR_126330, intron 8 of 13) L1ME3G|LINE|L1 -194517 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 286-229 chr2 186730830 186731018 + 2 NA intron (NM_177454, intron 1 of 7) intron (NM_177454, intron 1 of 7) 36864 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 397-23 chr10 10887968 10888254 + 2 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 64052 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 384-303 chr5 133701550 133701797 + 2 NA Intergenic Intergenic -89132 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 459-178 chr3 23458985 23459422 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 255876 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 321-547 chr8 55926239 55926498 + 2 NA intron (NM_002350, intron 1 of 12) intron (NM_002350, intron 1 of 12) -23513 NR_145767 109617001 NR_145767 ENSG00000199405 SNORA1B - small nucleolar RNA, H/ACA box 1B snoRNA 213-285 chr8 111580296 111580443 + 2 NA Intergenic Intergenic 203730 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 194-211 chr8 108790379 108790553 + 2 NA Intergenic Intergenic -2872 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 173-112 chr5 105318206 105318341 + 2 NA Intergenic L2a|LINE|L2 218799 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 323-464 chr6 78143743 78143976 + 2 NA Intergenic L1MA1|LINE|L1 395450 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 313-142 chr14 50019064 50019242 + 2 NA intron (NR_131171, intron 6 of 8) MIR|SINE|MIR -11633 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 274-283 chr4 58922786 58922938 + 2 NA Intergenic Intergenic -61420 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 338-415 chr5 17867292 17867529 + 2 NA intron (NR_134286, intron 4 of 7) L1M1|LINE|L1 60136 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 180-100 chr22 28382256 28382390 + 2 NA intron (NM_001145418, intron 2 of 22) MamRTE1|LINE|RTE-BovB -77546 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 335-96 chr11 77736159 77736386 + 2 NA intron (NM_016578, intron 4 of 15) L3|LINE|CR1 84562 NM_016578 51773 Hs.420229 NM_016578 ENSG00000048649 RSF1 HBXAP|RSF-1|XAP8|p325 remodeling and spacing factor 1 protein-coding 334-220 chr18 6047177 6047419 + 2 NA intron (NM_173464, intron 16 of 19) L1PA16|LINE|L1 -151344 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 289-321 chr3 163351533 163351736 + 2 NA Intergenic Intergenic -48333 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 198-194 chr5 22507223 22507391 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) -293457 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 391-371 chr8 137861621 137861996 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 221737 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 359-266 chr2 214360694 214361008 + 2 NA intron (NR_047660, intron 14 of 14) LTR48|LTR|ERV1 -50203 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 490 chr1 14354851 14355244 + 2 NA intron (NR_149058, intron 3 of 4) L1ME2|LINE|L1 64926 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 245-40 chr10 39322231 39322445 + 2 NA Intergenic ALR/Alpha|Satellite|centr 625742 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 312-112 chr12 99153838 99154078 + 2 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) 808 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 190-175 chr8 78375086 78375212 + 2 NA Intergenic Intergenic -141191 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 343-7 chr1 45212398 45212637 + 2 NA Intergenic LTR16B2|LTR|ERVL -5912 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 553-153 chr3 80477687 80478087 + 2 NA Intergenic Intergenic -287010 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 209-110 chr15 61690665 61690818 + 2 NA Intergenic MIRb|SINE|MIR -39177 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 311-100 chr12 39062234 39062531 + 2 NA Intergenic AluJr|SINE|Alu -156791 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 282-99 chr12 60537634 60537906 + 2 NA Intergenic Intergenic 848400 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 349-228 chr19 40025993 40026253 + 2 NA Intergenic L1M4b|LINE|L1 29063 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 359-341 chr3 189871886 189872083 + 2 NA intron (NM_003722, intron 9 of 13) AluJo|SINE|Alu 42062 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 377-103 chr13 34400822 34401132 + 2 NA intron (NR_146542, intron 1 of 3) L1MA6|LINE|L1 52934 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 405-328 chr8 112886676 112886898 + 2 NA intron (NM_001363185, intron 8 of 66) MER2|DNA|TcMar-Tigger 243294 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 535-52 chr12 60615065 60615424 + 2 NA Intergenic L1M3e|LINE|L1 925874 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 269-60 chr11 21622299 21622495 + 2 NA Intergenic L1ME3G|LINE|L1 -570688 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 369-402 chr8 65348175 65348487 + 2 NA Intergenic Intergenic -167991 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 332-344 chr3 122026788 122027049 + 2 NA Intergenic L1ME3Cz|LINE|L1 -4671 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 256-389 chr7 52577741 52577917 + 2 NA Intergenic Intergenic -457804 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 274-352 chr7 48023724 48023984 + 2 NA intron (NM_001284350, intron 2 of 10) L1MB5|LINE|L1 5253 NM_152782 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 521-251 chr8 58003437 58003815 + 2 NA intron (NM_147189, intron 1 of 4) Tigger1|DNA|TcMar-Tigger 9103 NM_147189 90362 Hs.154652 NM_147189 ENSG00000169122 FAM110B C8orf72 family with sequence similarity 110 member B protein-coding 457-79 chr16 12234366 12234784 + 2 NA intron (NM_032167, intron 14 of 20) L1MB7|LINE|L1 257841 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 296-369 chr5 52393525 52393784 + 2 NA Intergenic Intergenic 385623 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 474-316 chrX 116266471 116266821 + 2 NA Intergenic Intergenic 95902 NM_000686 186 Hs.405348 NM_000686 ENSG00000180772 AGTR2 AT2|ATGR2|MRX88 angiotensin II receptor type 2 protein-coding 316-521 chr7 65395562 65395758 + 2 NA intron (NM_001287533, intron 4 of 4) MSTB|LTR|ERVL-MaLR 21805 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 531-2 chr1 37113259 37113686 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -48091 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 515-24 chr10 61423489 61423811 + 2 NA intron (NR_134508, intron 4 of 6) AluJr|SINE|Alu -28989 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 273-459 chr8 125856674 125856873 + 2 NA Intergenic L1MC4a|LINE|L1 94424 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 425-166 chr21 16384224 16384485 + 2 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -34849 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 525-230 chr6 133300049 133300450 + 2 NA intron (NM_172103, intron 2 of 18) Tigger2a|DNA|TcMar-Tigger 58750 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 376-153 chr18 46451283 46451522 + 2 NA intron (NM_152470, intron 6 of 7) (AAAT)n|Simple_repeat|Simple_repeat 67684 NM_001173129 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 330-467 chr6 136722078 136722346 + 2 NA intron (NM_005923, intron 1 of 29) L1ME4a|LINE|L1 -61835 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 193-147 chr4 14235156 14235299 + 2 NA Intergenic Intergenic 123259 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 385-102 chr14 71824910 71825205 + 2 NA Intergenic Intergenic -107114 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 360-239 chr2 149717546 149717730 + 2 NA intron (NR_110240, intron 1 of 2) MER46C|DNA|TcMar-Tigger -129863 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 819-36 chr9 77566190 77566822 + 2 NA intron (NM_004297, intron 1 of 6) L1ME3G|LINE|L1 81816 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 365-348 chr6 61874801 61875008 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 300774 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 182-146 chr6 39251996 39252124 + 2 NA Intergenic L1MC4|LINE|L1 -22585 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 150-75 chr4 58444254 58444370 + 2 NA Intergenic Intergenic 92016 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 219-261 chr4 97309974 97310137 + 2 NA Intergenic L1MD1|LINE|L1 -56871 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 361-258 chr21 14229296 14229550 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 13266 NR_135308 54033 Hs.283828 NM_144770 ENSG00000185272 RBM11 - RNA binding motif protein 11 protein-coding 292-287 chr3 84077509 84077775 + 2 NA Intergenic Intergenic 791933 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 212-34 chr10 38810929 38811078 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 114407 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 414-291 chr6 139810709 139811016 + 2 NA intron (NR_038399, intron 1 of 2) AluJr4|SINE|Alu 39789 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 338-233 chr19 22549984 22550230 + 2 NA Intergenic L1MA9|LINE|L1 17481 NR_110664 100128139 Hs.550683 NR_110663 ENSG00000269364 LINC01233 XLOC_013014 long intergenic non-protein coding RNA 1233 ncRNA 535-129 chr2 110133353 110133883 + 2 NA intron (NM_207181, intron 16 of 19) L1M4c|LINE|L1 -17052 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 267-169 chr2 3895867 3896062 + 2 NA Intergenic L1PA11|LINE|L1 78068 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 354-299 chr3 79595117 79595392 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 87367 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 309-510 chr7 49723811 49724004 + 2 NA Intergenic L1MC3|LINE|L1 -49731 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 363-384 chr6 889569 889838 + 2 NA Intergenic Intergenic 21205 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 484-139 chr2 133679286 133679696 + 2 NA Intergenic MIRb|SINE|MIR -111028 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 208-37 chr11 69241245 69241384 + 2 NA Intergenic Intergenic -52841 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 144-95 chr7 47956929 47957020 + 2 NA Intergenic Intergenic -8483 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 276-40 chr1 246993959 246994226 + 2 NA intron (NR_037892, intron 3 of 5) AluSz|SINE|Alu 13965 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 298-400 chr6 62863072 62863250 + 2 NA Intergenic SATR1|Satellite|Satellite 456816 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 211-11 chr1 147879267 147879448 + 2 NA Intergenic MIRb|SINE|MIR -23438 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 390-62 chr11 87486156 87486539 + 2 NA Intergenic L1ME1|LINE|L1 233064 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 224-320 chr8 68899811 68899971 + 2 NA Intergenic L1ME4b|LINE|L1 204299 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 286-264 chr22 47892178 47892410 + 2 NA Intergenic Intergenic 260620 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 305-331 chr3 795094 795381 + 2 NA intron (NR_110118, intron 2 of 3) HAL1ME|LINE|L1 203132 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 519-86 chr18 72495942 72496349 + 2 NA Intergenic Intergenic 48197 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 314-433 chr4 97889554 97889757 + 2 NA intron (NM_174952, intron 8 of 10) L1MA8|LINE|L1 253821 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 200-297 chrX 154321051 154321193 + 2 NA intron (NM_001145934, intron 7 of 11) intron (NM_001145934, intron 7 of 11) 16065 NM_001145934 8277 Hs.102866 NM_012253 ENSG00000007350 TKTL1 TKR|TKT2 transketolase like 1 protein-coding 547-112 chr2 161050539 161050981 + 2 NA Intergenic Intergenic -86195 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 278-106 chr14 47818429 47818599 + 2 NA Intergenic L1MA3|LINE|L1 -23500 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 283-15 chr1 103545988 103546208 + 2 NA intron (NM_017619, intron 10 of 14) intron (NM_017619, intron 10 of 14) -8546 NM_020978 280 Hs.484588 NM_020978 ENSG00000240038 AMY2B AMY2|AMY3|HXA amylase alpha 2B (pancreatic) protein-coding 621-103 chr5 157552047 157552441 + 2 NA intron (NM_033274, intron 3 of 22) L1MA1|LINE|L1 23531 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 253-44 chr10 16367131 16367298 + 2 NA Intergenic Intergenic -69729 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 265-190 chr2 112109279 112109436 + 2 NA intron (NM_001329914, intron 17 of 18) L1M4a1|LINE|L1 -29028 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 355-527 chr8 141881508 141881762 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -95322 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 489-242 chr7 62843941 62844264 + 2 NA Intergenic ALR/Alpha|Satellite|centr 459954 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 271-137 chr14 65846058 65846265 + 2 NA Intergenic L1ME3C|LINE|L1 375059 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 302-84 chr11 100582764 100582959 + 2 NA Intergenic L2b|LINE|L2 -104427 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 183-117 chr5 31567899 31568026 + 2 NA Intergenic L1M5|LINE|L1 35661 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 193-26 chr10 19241262 19241427 + 2 NA intron (NM_001142308, intron 18 of 39) L1MA6|LINE|L1 192543 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 288-325 chr5 38196900 38197114 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 48527 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 225-206 chr3 68295363 68295532 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -205190 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 271-300 chr4 34416656 34416884 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -147023 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 215-75 chr14 33716985 33717165 + 2 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) 8138 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 441-89 chr15 69804659 69804930 + 2 NA Intergenic Intergenic -30440 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 252-405 chr7 110756746 110756942 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -334162 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 319-48 chr10 30549970 30550207 + 2 NA Intergenic Intergenic 79665 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 266-302 chr4 107299639 107299831 + 2 NA Intergenic Intergenic -263422 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 446-148 chr2 70841921 70842171 + 2 NA Intergenic L1MEc|LINE|L1 -6230 NM_015717 50489 Hs.199731 NM_015717 ENSG00000116031 CD207 CLEC4K CD207 molecule protein-coding 328-272 chr2 106705787 106705966 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 180152 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 266-47 chr10 77209374 77209600 + 2 NA intron (NM_001271519, intron 3 of 28) intron (NM_001271519, intron 3 of 28) 68656 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 254-243 chr3 61603069 61603240 + 2 NA intron (NM_002841, intron 1 of 29) MER63B|DNA|hAT-Blackjack 41583 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 275-326 chr7 33684440 33684614 + 2 NA Intergenic Intergenic -220388 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 229-198 chr2 129505905 129506040 + 2 NA Intergenic Intergenic -232081 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 315-189 chr17 33135630 33135931 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 142929 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 416-47 chr10 78167738 78168065 + 2 NA Intergenic L1ME1|LINE|L1 -80724 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 558-193 chr6 154380244 154380677 + 2 NA Intergenic AluSx1|SINE|Alu -23694 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 330-25 chr1 110577153 110577347 + 2 NA Intergenic L2a|LINE|L2 29108 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 241-377 chr7 92703455 92703606 + 2 NA intron (NM_001259, intron 4 of 7) intron (NM_001259, intron 4 of 7) -113140 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 339-92 chr11 40810159 40810396 + 2 NA intron (NM_020929, intron 1 of 4) L2a|LINE|L2 -517147 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 165-59 chr2 183116903 183116998 + 2 NA promoter-TSS (NM_001287584) promoter-TSS (NM_001287584) -540 NM_001287584 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 475-216 chr5 15464935 15465322 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -35052 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 116-34 chr4 44198366 44198472 + 2 NA intron (NM_198353, intron 1 of 1) L1PA16|LINE|L1 181357 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 279-275 chr3 153300281 153300535 + 2 NA Intergenic Intergenic 138182 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 246-282 chr3 187224786 187225016 + 2 NA intron (NM_001879, intron 13 of 15) LTR50|LTR|ERVL -17272 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 219-238 chr3 94529905 94530063 + 2 NA Intergenic Intergenic -408279 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 340-89 chr11 97470659 97470992 + 2 NA Intergenic Intergenic 962400 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 125-58 chr6 93898734 93898823 + 2 NA Intergenic Intergenic 180475 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 307-211 chr19 28114001 28114296 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -320208 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 275-163 chr18 59506744 59506922 + 2 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) -147568 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 318-547 chr8 100666340 100666602 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -16806 NM_152628 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 224-119 chr18 878461 878654 + 2 NA Intergenic MLT2C1|LTR|ERVL -26314 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 265-315 chr5 113800163 113800382 + 2 NA Intergenic Intergenic 286578 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 413-49 chr11 21334925 21335299 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 665526 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 442-256 chr6 95217574 95217950 + 2 NA Intergenic Intergenic 359689 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 733-64 chr5 82896988 82897506 + 2 NA Intergenic Intergenic -37411 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 207-17 chr1 161869674 161869819 + 2 NA intron (NM_007348, intron 14 of 15) intron (NM_007348, intron 14 of 15) 103426 NM_007348 22926 Hs.492740 NM_007348 ENSG00000118217 ATF6 ACHM7|ATF6A activating transcription factor 6 protein-coding 265-328 chr6 7854770 7855005 + 2 NA intron (NM_001718, intron 2 of 6) intron (NM_001718, intron 2 of 6) 55190 NM_001145549 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 345-279 chr2 123910196 123910404 + 2 NA Intergenic L2c|LINE|L2 114874 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 305-215 chr18 13510846 13511079 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) 51015 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 233-379 chr8 108974710 108974895 + 2 NA Intergenic MER67D|LTR|ERV1 -111826 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 260-251 chr22 26776194 26776345 + 2 NA intron (NR_110543, intron 3 of 5) MLT1I|LTR|ERVL-MaLR -83942 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 276-301 chr3 89447414 89447587 + 2 NA intron (NM_005233, intron 13 of 16) intron (NM_005233, intron 13 of 16) 339879 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 191-67 chr16 59432757 59432918 + 2 NA Intergenic Intergenic 322354 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 264-409 chr8 59894642 59894873 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 386643 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 414-239 chr4 80574136 80574474 + 2 NA intron (NM_152770, intron 2 of 5) L1MA3|LINE|L1 238585 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 299-449 chr8 82845784 82845948 + 2 NA Intergenic Intergenic -66238 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 383-134 chr15 100453219 100453433 + 2 NA intron (NM_001290341, intron 13 of 13) L1MA4A|LINE|L1 80387 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 447-141 chr2 180315020 180315284 + 2 NA Intergenic L3|LINE|CR1 -307855 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 452-269 chr8 86595818 86596121 + 2 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 81534 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 429-74 chr12 127961548 127961921 + 2 NA intron (NR_126452, intron 2 of 3) intron (NR_126452, intron 2 of 3) 22157 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 285-138 chr15 99975570 99975737 + 2 NA intron (NM_139057, intron 21 of 21) intron (NM_139057, intron 21 of 21) 168630 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 305-214 chr18 6008655 6008928 + 2 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -112837 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 346-93 chr12 17659720 17660006 + 2 NA Intergenic Intergenic -13436 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 215-346 chrX 65344636 65344768 + 2 NA Intergenic L1PA13|LINE|L1 -144033 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 366-368 chr6 34705821 34706129 + 2 NA Intergenic AluJr|SINE|Alu 9030 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 433-210 chr4 135596853 135597129 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 291102 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 277-117 chr14 62949526 62949686 + 2 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 95852 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 436-271 chr6 124673461 124673760 + 2 NA intron (NM_001040214, intron 4 of 6) L1MB1|LINE|L1 -288935 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 138-63 chr5 14808046 14808131 + 2 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 17924 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 614-56 chr2 123740316 123740795 + 2 NA Intergenic MIRc|SINE|MIR 284619 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 236-40 chr10 44913688 44913917 + 2 NA intron (NM_001345926, intron 1 of 3) intron (NM_001345926, intron 1 of 3) 2465 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 235-380 chr8 138072052 138072203 + 2 NA intron (NR_161374, intron 1 of 7) L1MD2|LINE|L1 11418 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 293-202 chr2 125846809 125846999 + 2 NA Intergenic L1PBa|LINE|L1 271081 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 507-46 chr11 13098916 13099257 + 2 NA Intergenic Intergenic 89770 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 285-335 chr5 33770951 33771141 + 2 NA intron (NM_001324511, intron 2 of 2) intron (NM_001324511, intron 2 of 2) 120944 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 434-14 chr1 112192091 112192482 + 2 NA Intergenic L1MEc|LINE|L1 201750 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 377-241 chr2 234975492 234975732 + 2 NA intron (NM_001371302, intron 1 of 5) AluJb|SINE|Alu -3091 NM_001371303 161-93 chr6 9164341 9164468 + 2 NA Intergenic L1ME1|LINE|L1 512195 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 224-72 chr13 65378359 65378569 + 2 NA Intergenic L1M4b|LINE|L1 -487583 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 169-123 chr7 54439741 54439849 + 2 NA Intergenic L1MD1|LINE|L1 -102530 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 284-331 chr5 130367810 130367975 + 2 NA Intergenic Intergenic 463427 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 278-298 chr4 28348163 28348309 + 2 NA Intergenic MER49|LTR|ERV1 -471346 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 276-258 chr20 10587702 10587919 + 2 NA intron (NM_001009608, intron 4 of 7) L1MA9|LINE|L1 61885 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 703-18 chr11 34373977 34374504 + 2 NA Intergenic L1PA7|LINE|L1 -16230 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 377-270 chr3 95847182 95847406 + 2 NA Intergenic (TTGAT)n|Simple_repeat|Simple_repeat -164101 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 176-42 chr17 59652763 59652916 + 2 NA intron (NM_001288653, intron 5 of 31) Tigger1|DNA|TcMar-Tigger 32944 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 355-424 chr5 179311865 179312073 + 2 NA intron (NM_014244, intron 2 of 21) intron (NM_014244, intron 2 of 21) 33492 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 283-372 chr5 95747625 95747860 + 2 NA intron (NM_014899, intron 3 of 11) intron (NM_014899, intron 3 of 11) -15640 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 180-59 chr16 54386160 54386300 + 2 NA Intergenic Intergenic -15531 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 321-99 chr11 43111067 43111338 + 2 NA Intergenic Intergenic 158167 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 407-317 chr8 78845600 78845943 + 2 NA Intergenic Intergenic 8242 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 262-342 chr5 45946181 45946398 + 2 NA Intergenic ALR/Alpha|Satellite|centr -249909 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 194-219 chr8 139449149 139449331 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 253883 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 265-208 chr20 1503759 1503954 + 2 NA Intergenic Intergenic -12436 NM_001134836 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 209-243 chr5 2552211 2552367 + 2 NA Intergenic L1ME2|LINE|L1 -160302 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 188-69 chr16 60105135 60105261 + 2 NA Intergenic Intergenic 249845 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 319-19 chr1 110582761 110583006 + 2 NA Intergenic MIRb|SINE|MIR 23475 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 488-275 chr8 127528909 127529369 + 2 NA Intergenic Intergenic -47000 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 403-29 chr10 44290790 44291042 + 2 NA Intergenic LTR49-int|LTR|ERV1 -1834 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 375-234 chr20 10958192 10958503 + 2 NA Intergenic Intergenic -49075 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 214-267 chr5 106490868 106491000 + 2 NA Intergenic L1MA5A|LINE|L1 520080 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 212-71 chr11 109246855 109246987 + 2 NA Intergenic MIR|SINE|MIR -175269 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 451-143 chr3 44516387 44516721 + 2 NA Intergenic Intergenic -5937 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 521-35 chr10 98377923 98378248 + 2 NA Intergenic Intergenic 17222 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 356-486 chr8 120831497 120831750 + 2 NA Intergenic Intergenic -19577 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 270-357 chr7 42587086 42587250 + 2 NA Intergenic L1MEf|LINE|L1 119279 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 326-274 chr2 172292134 172292374 + 2 NA Intergenic MER96B|DNA|hAT-Tip100 -135082 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 225-58 chr11 48709872 48710023 + 2 NA Intergenic ALR/Alpha|Satellite|centr 221154 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 237-205 chr20 11050329 11050542 + 2 NA Intergenic Intergenic 23891 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 516-181 chr3 164305402 164305794 + 2 NA Intergenic L1PBa|LINE|L1 -134042 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 361-328 chr4 99357856 99358041 + 2 NA Intergenic Intergenic -5202 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 172-15 chr10 67375749 67375859 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 27606 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 650-3 chr1 81713697 81714274 + 2 NA intron (NM_001297704, intron 1 of 20) THE1B|LTR|ERVL-MaLR 14215 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 679-58 chr2 229475272 229475764 + 2 NA intron (NM_139072, intron 7 of 12) intron (NM_139072, intron 7 of 12) -204231 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 591-157 chr7 50253801 50254321 + 2 NA Intergenic L1MC4|LINE|L1 -50003 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 449-202 chr5 3838332 3838657 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 242662 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 331-571 chrX 76704884 76705104 + 2 NA intron (NR_110400, intron 1 of 3) L1MA5|LINE|L1 214366 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 236-302 chr6 55704261 55704467 + 2 NA Intergenic Intergenic -125150 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 461-199 chr4 89489113 89489509 + 2 NA Intergenic Intergenic -181511 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 349-12 chr1 59610061 59610306 + 2 NA intron (NM_001350794, intron 9 of 14) L1PA8|LINE|L1 94553 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 332-88 chr11 48092781 48093035 + 2 NA intron (NM_001098503, intron 1 of 8) L1MA9|LINE|L1 -3874 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 271-95 chr12 37794477 37794637 + 2 NA Intergenic ALR/Alpha|Satellite|centr -522217 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 343-214 chr19 37849350 37849615 + 2 NA intron (NR_040015, intron 2 of 5) L1M4|LINE|L1 5714 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 363-41 chr10 24392229 24392544 + 2 NA intron (NM_019590, intron 3 of 20) intron (NM_019590, intron 3 of 20) -57028 NM_001282769 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 348-266 chr20 40953567 40953910 + 2 NA Intergenic Intergenic -26975 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 196-59 chr12 34407114 34407276 + 2 NA Intergenic GSATII|Satellite|centr 384699 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 516-94 chr16 52930715 52931118 + 2 NA Intergenic MIR|SINE|MIR 121957 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 308-497 chr8 90855585 90855860 + 2 NA intron (NM_022351, intron 3 of 12) LOR1-int|LTR|ERV1 63947 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 348-294 chr3 46191030 46191285 + 2 NA Intergenic Intergenic 17156 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 263-66 chr11 18027778 18028004 + 2 NA intron (NM_004179, intron 5 of 9) intron (NM_004179, intron 5 of 9) 12897 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 455-90 chr16 87270381 87270729 + 2 NA Intergenic Intergenic 21897 NR_104667 101928682 Hs.149004 NR_104667 ENSG00000261697 LOC101928682 - uncharacterized LOC101928682 ncRNA 255-53 chr11 20806446 20806632 + 2 NA intron (NM_001288714, intron 3 of 18) L1M1|LINE|L1 136953 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 375-101 chr12 43380261 43380493 + 2 NA intron (NM_025003, intron 31 of 38) L1MB7|LINE|L1 171826 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 144-80 chr5 58096882 58096954 + 2 NA Intergenic Intergenic 25423 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 319-123 chr12 133163794 133163995 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -17601 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 508-202 chr6 40178928 40179247 + 2 NA Intergenic Intergenic 176919 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 399-52 chr11 38873179 38873547 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 224505 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 364-472 chr9 75527740 75527945 + 2 NA Intergenic Intergenic -362802 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 190-14 chr10 27222188 27222308 + 2 NA intron (NM_001271512, intron 4 of 11) intron (NM_001271512, intron 4 of 11) 18238 NM_001301252 91452 Hs.530597 NM_145698 ENSG00000107897 ACBD5 - acyl-CoA binding domain containing 5 protein-coding 340-376 chr3 138555921 138556150 + 2 NA intron (NM_001288967, intron 2 of 13) L1PB1|LINE|L1 35921 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 328-636 chrX 98082963 98083149 + 2 NA Intergenic Intergenic -518521 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 441-64 chr13 24853874 24854156 + 2 NA exon (NM_001184993, exon 25 of 36) exon (NM_001184993, exon 25 of 36) 68846 NM_018451 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 565-34 chr12 38021059 38021556 + 2 NA Intergenic ALR/Alpha|Satellite|centr -295467 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 549-81 chr17 69872959 69873338 + 2 NA intron (NR_109972, intron 4 of 4) intron (NR_109972, intron 4 of 4) -88559 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 342-150 chr14 84673348 84673628 + 2 NA Intergenic Intergenic -598444 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 183-141 chr7 15861837 15861948 + 2 NA Intergenic Intergenic 173514 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 229-207 chr2 166211171 166211377 + 2 NA intron (NM_001365536, intron 24 of 26) L1M4|LINE|L1 -62113 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 285-304 chr4 49654177 49654442 + 2 NA Intergenic (GAATG)n|Satellite|Satellite 667667 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 167-31 chr12 128122557 128122660 + 2 NA TTS (NR_104648) TTS (NR_104648) 4391 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 277-329 chr5 68618015 68618204 + 2 NA Intergenic Intergenic 325532 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 567-190 chr8 106544525 106544940 + 2 NA intron (NM_018002, intron 3 of 15) intron (NM_018002, intron 3 of 15) 96808 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 378-205 chr19 44040336 44040550 + 2 NA Intergenic L1M4|LINE|L1 -11593 NM_013361 7766 Hs.720813 NM_013361 ENSG00000178386 ZNF223 - zinc finger protein 223 protein-coding 301-384 chr5 167677986 167678167 + 2 NA intron (NM_001368145, intron 1 of 26) L1ME4a|LINE|L1 -76853 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 463-240 chr5 123635373 123635657 + 2 NA Intergenic L1MA8|LINE|L1 90098 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 511-216 chr5 165817783 165818213 + 2 NA Intergenic Intergenic 1108372 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 279-49 chr10 66121524 66121748 + 2 NA intron (NM_001127384, intron 13 of 17) AluJr|SINE|Alu 550211 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 335-61 chr10 65612771 65613099 + 2 NA intron (NR_120647, intron 2 of 5) intron (NR_120647, intron 2 of 5) 41510 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 193-126 chr20 9443953 9444089 + 2 NA exon (NM_001172646, exon 30 of 38) exon (NM_001172646, exon 30 of 38) -70337 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 357-322 chr4 156779055 156779314 + 2 NA intron (NM_016205, intron 3 of 5) intron (NM_016205, intron 3 of 5) 192615 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 369-280 chr4 28799149 28799442 + 2 NA Intergenic LTR78|LTR|ERV1 -20287 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 409-251 chr5 119620813 119621137 + 2 NA Intergenic L1MA2|LINE|L1 -8583 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 222-33 chr10 44321810 44321967 + 2 NA Intergenic Intergenic 29138 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 327-279 chr2 167936977 167937151 + 2 NA intron (NR_131227, intron 1 of 4) intron (NR_131227, intron 1 of 4) 4080 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 480-127 chr18 69803507 69803924 + 2 NA intron (NM_152721, intron 7 of 7) AluSc|SINE|Alu 144158 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 289-219 chr2 55986122 55986267 + 2 NA intron (NR_126406, intron 2 of 2) intron (NR_126406, intron 2 of 2) 2865 NR_029629 406998 NR_029629 ENSG00000207798 MIR216A MIR216|MIRN216|MIRN216A|miRNA216|mir-216|mir-216a microRNA 216a ncRNA 339-604 chr9 26596219 26596479 + 2 NA Intergenic Intergenic 296453 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 263-299 chr4 100714779 100714985 + 2 NA Intergenic L1MC5|LINE|L1 -39769 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 197-74 chr17 58165282 58165437 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -4297 NM_001004707 124538 Hs.446879 NM_001004707 ENSG00000255713 OR4D2 BC2009|OR17-24 olfactory receptor family 4 subfamily D member 2 protein-coding 707-75 chr4 111158996 111159638 + 2 NA Intergenic L1MA6|LINE|L1 -298670 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 318-271 chr2 77478175 77478403 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 44087 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 622-122 chr6 124672383 124672769 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -289969 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 652-79 chr3 65529549 65530012 + 2 NA intron (NM_001365904, intron 2 of 24) (TA)n|Simple_repeat|Simple_repeat -364036 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 131-48 chr22 47231000 47231076 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -114533 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 509-168 chr4 158929 159325 + 2 NA intron (NR_110527, intron 3 of 4) AluSx3|SINE|Alu 31006 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 268-67 chr11 70476625 70476800 + 2 NA intron (NR_110766, intron 8 of 8) intron (NR_110766, intron 8 of 8) 78183 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 213-307 chrX 66826526 66826659 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -187294 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 346-419 chr6 48718306 48718495 + 2 NA Intergenic L1MEf|LINE|L1 -649711 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 299-309 chr4 12131665 12131886 + 2 NA Intergenic L1MA9|LINE|L1 -91676 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 439-222 chr5 10092193 10092539 + 2 NA Intergenic L1P4|LINE|L1 157522 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 178-109 chr5 30000182 30000322 + 2 NA Intergenic L1MCa|LINE|L1 119692 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 390-106 chr14 72042556 72042797 + 2 NA intron (NM_001370288, intron 2 of 16) L1ME4a|LINE|L1 109149 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 255-128 chr15 66959511 66959722 + 2 NA Intergenic MIRb|SINE|MIR -3101 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 339-7 chr1 40452259 40452428 + 2 NA intron (NM_001369565, intron 2 of 5) L1MC5a|LINE|L1 1867 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 548-54 chr12 55502054 55502570 + 2 NA Intergenic L1PA15|LINE|L1 9934 NM_001005519 403284 Hs.626886 NM_001005519 ENSG00000205327 OR6C68 - olfactory receptor family 6 subfamily C member 68 protein-coding 573-199 chr8 112876530 112876952 + 2 NA intron (NM_001363185, intron 8 of 66) L1PA7|LINE|L1 233248 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 326-549 chr8 119369185 119369372 + 2 NA Intergenic Intergenic 44107 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 497-151 chr20 15124819 15125165 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -71848 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 240-299 chr3 157669196 157669375 + 2 NA Intergenic Intergenic 125941 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 309-474 chr6 55387065 55387325 + 2 NA intron (NM_207410, intron 6 of 8) intron (NM_207410, intron 6 of 8) 59726 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 148-11 chr10 126492948 126493076 + 2 NA intron (NR_146939, intron 4 of 11) L1ME4a|LINE|L1 28481 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 275-158 chr18 36290411 36290601 + 2 NA Intergenic AluSz|SINE|Alu -7207 NM_025135 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 304-229 chr19 56774946 56775242 + 2 NA exon (NM_001146326, exon 12 of 12) exon (NM_001146326, exon 12 of 12) 9772 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 390-167 chr19 53311034 53311261 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -19713 NR_159880 112401 Hs.348263 NM_033341 ENSG00000163098 BIRC8 ILP-2|ILP2|RNF136|hILP2 baculoviral IAP repeat containing 8 pseudo 149-74 chr3 190559728 190559811 + 2 NA intron (NR_157352, intron 2 of 10) L1MD2|LINE|L1 45684 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 530-94 chr16 79122278 79122634 + 2 NA intron (NM_001291997, intron 7 of 7) (TCTT)n|Simple_repeat|Simple_repeat 478281 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 232-187 chr2 133669530 133669694 + 2 NA Intergenic Intergenic -101149 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 209-219 chr4 33370537 33370704 + 2 NA Intergenic Intergenic 669273 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 243-294 chr3 108525767 108525940 + 2 NA intron (NM_014981, intron 1 of 41) intron (NM_014981, intron 1 of 41) 3469 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 337-372 chr3 167952883 167953125 + 2 NA Intergenic Intergenic 57056 NR_145443 646168 Hs.390443 NR_033843 ENSG00000244227 LRRC77P LINC01330 leucine rich repeat containing 77, pseudogene pseudo 306-37 chr1 188101493 188101671 + 2 NA Intergenic LTR49-int|LTR|ERV1 657954 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 315-193 chr17 57681797 57682063 + 2 NA 3' UTR (NM_138962, exon 14 of 14) 3' UTR (NM_138962, exon 14 of 14) 63369 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 250-247 chr21 10711743 10711977 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 190346 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 295-187 chr18 55558172 55558459 + 2 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) 27804 NM_001348217 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 464-86 chr16 78330224 78330535 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 230725 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 317-243 chr2 115496704 115496977 + 2 NA intron (NM_001321912, intron 4 of 25) LTR8B|LTR|ERV1 153025 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 227-366 chr8 50459467 50459638 + 2 NA intron (NR_135797, intron 8 of 20) L1PA16|LINE|L1 295421 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 218-208 chr3 34362706 34362912 + 2 NA Intergenic MIRc|SINE|MIR 564179 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 389-65 chr11 97641850 97642212 + 2 NA Intergenic L1MEc|LINE|L1 1133606 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 255-141 chr16 25444995 25445206 + 2 NA Intergenic Intergenic -187255 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 382-115 chr14 68802889 68803261 + 2 NA Intergenic L1ME1|LINE|L1 -6832 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 315-72 chr10 119377738 119378012 + 2 NA promoter-TSS (NR_039829) promoter-TSS (NR_039829) -97 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 425-263 chr6 107220817 107221204 + 2 NA intron (NM_020381, intron 4 of 7) intron (NM_020381, intron 4 of 7) -105495 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 298-266 chr21 27842148 27842328 + 2 NA Intergenic Intergenic 119859 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 416-24 chr1 224538920 224539187 + 2 NA intron (NM_001322304, intron 2 of 6) intron (NM_001322304, intron 2 of 6) -77264 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 177-22 chr10 67152398 67152513 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 140189 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 315-217 chr19 57587202 57587400 + 2 NA intron (NM_001010879, intron 2 of 3) intron (NM_001010879, intron 2 of 3) 3156 NM_001321145 284307 Hs.454830 NM_001010879 ENSG00000171649 ZIK1 ZNF762 zinc finger protein interacting with K protein 1 protein-coding 845-10 chr16 48479890 48480559 + 2 NA Intergenic MER65C|LTR|ERV1 -94811 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 169-45 chr15 100081394 100081552 + 2 NA intron (NM_139057, intron 15 of 21) L1MB8|LINE|L1 260502 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 484-50 chr12 83874711 83875193 + 2 NA Intergenic Intergenic 1037847 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 137-14 chr11 116441643 116441739 + 2 NA Intergenic Intergenic -197731 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 700-78 chr5 22245885 22246310 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -32247 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 306-92 chr11 112638228 112638417 + 2 NA Intergenic L1ME1|LINE|L1 -82520 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 392-109 chr16 82906933 82907173 + 2 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 83245 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 422-145 chr2 45381168 45381479 + 2 NA Intergenic L2b|LINE|L2 -126382 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 232-242 chr3 84081557 84081766 + 2 NA Intergenic Intergenic 787914 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 386-199 chr2 226640020 226640310 + 2 NA Intergenic MamGypLTR1d|LTR|Gypsy 18628 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 171-110 chr5 141368269 141368435 + 2 NA intron (NM_018918, intron 1 of 3) (AC)n|Simple_repeat|Simple_repeat -1890 NM_032097 56102 Hs.368160 NM_018924 ENSG00000262209 PCDHGB3 PCDH-GAMMA-B3 protocadherin gamma subfamily B, 3 protein-coding 285-135 chr15 70716590 70716786 + 2 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) -14406 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 376-60 chr10 112862840 112863212 + 2 NA Intergenic AluSq2|SINE|Alu 39530 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 207-256 chr6 46923442 46923605 + 2 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) -1585 NM_001098518 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 419-115 chr17 61438930 61439262 + 2 NA Intergenic Intergenic -13326 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 270-276 chr4 116430810 116431071 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 131215 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 217-353 chr7 76420413 76420611 + 2 NA intron (NM_007155, intron 1 of 8) L1M5|LINE|L1 -4438 NM_001110354 7784 Hs.656137 NM_007155 ENSG00000188372 ZP3 OOMD3|ZP3A|ZP3B|ZPC|Zp-3 zona pellucida glycoprotein 3 protein-coding 245-279 chr5 40976231 40976445 + 2 NA intron (NM_000587, intron 15 of 17) intron (NM_000587, intron 15 of 17) 66841 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 392-204 chr3 95771170 95771401 + 2 NA Intergenic Intergenic -88092 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 378-417 chr7 110340838 110341145 + 2 NA Intergenic MIRb|SINE|MIR -380778 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 200-242 chr6 120897442 120897583 + 2 NA Intergenic Intergenic 436968 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 260-227 chr2 201510765 201510925 + 2 NA intron (NM_001168216, intron 11 of 12) L1M4|LINE|L1 59105 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 257-436 chr9 31231367 31231590 + 2 NA Intergenic L1MB7|LINE|L1 150012 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 384-149 chr18 64073423 64073731 + 2 NA Intergenic MER77B|LTR|ERVL -30514 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 340-451 chr5 68387571 68387777 + 2 NA Intergenic Intergenic 95097 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 592-18 chr10 130916452 130916905 + 2 NA Intergenic L1MC3|LINE|L1 45990 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 354-130 chr14 45444425 45444693 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -191357 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 406-46 chr11 28797170 28797437 + 2 NA Intergenic Intergenic -319755 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 706-74 chr8 4503062 4503560 + 2 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 491603 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 285-441 chr8 138573547 138573728 + 2 NA Intergenic L2c|LINE|L2 -75907 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 390-60 chr11 54931179 54931559 + 2 NA Intergenic ALR/Alpha|Satellite|centr 224537 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 284-67 chr11 17933142 17933359 + 2 NA intron (NR_104040, intron 9 of 11) intron (NR_104040, intron 9 of 11) 79797 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 635-105 chr8 4433473 4434050 + 2 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 561153 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 351-40 chr10 43665806 43666018 + 2 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -17031 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 273-221 chr2 78625728 78625908 + 2 NA Intergenic Intergenic 80287 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 342-61 chr10 43813461 43813711 + 2 NA Intergenic L1ME3Cz|LINE|L1 -23169 NR_002726 10151 Hs.632956 NR_002726 HNRNPA3P1 D10S102|FBRNP|HNRPA3|HNRPA3P1 heterogeneous nuclear ribonucleoprotein A3 pseudogene 1 pseudo 199-170 chr3 180660342 180660501 + 2 NA intron (NM_181426, intron 4 of 19) Charlie4z|DNA|hAT-Charlie 19068 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 678-41 chr17 70627900 70628430 + 2 NA Intergenic Intergenic 458630 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 375-135 chr14 86956893 86957176 + 2 NA Intergenic Intergenic 51256 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 414-165 chr2 138128232 138128465 + 2 NA Intergenic Intergenic 26464 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 246-25 chr1 221728901 221729126 + 2 NA intron (NR_111940, intron 1 of 2) MIR|SINE|MIR 7887 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 364-380 chr6 55572903 55573176 + 2 NA intron (NM_001287746, intron 1 of 9) L1MEg|LINE|L1 6175 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 297-355 chr5 13180322 13180481 + 2 NA Intergenic Intergenic -147515 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 342-297 chr21 23952833 23953089 + 2 NA Intergenic Intergenic 368416 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 311-185 chr16 76875342 76875521 + 2 NA Intergenic Intergenic 6495 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 220-35 chr1 237534958 237535137 + 2 NA intron (NM_001035, intron 25 of 104) L1MA8|LINE|L1 63928 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 511-29 chr10 109648578 109648935 + 2 NA Intergenic Intergenic 274490 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 243-138 chr15 57606884 57607111 + 2 NA intron (NM_001018100, intron 2 of 12) 7SK|RNA|RNA 15093 NR_104370 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 358-88 chr12 13907621 13907877 + 2 NA intron (NM_000834, intron 1 of 12) L1ME3|LINE|L1 72607 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 514-241 chr5 155516900 155517250 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 503320 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 265-410 chr9 25954430 25954674 + 2 NA Intergenic Intergenic -112123 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 141-13 chr10 66344936 66345065 + 2 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -581036 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 580-36 chr12 14826174 14826672 + 2 NA 3' UTR (NM_021071, exon 3 of 3) 3' UTR (NM_021071, exon 3 of 3) -12241 NM_001013698 440087 Hs.220931 NM_001013698 ENSG00000179256 SMCO3 C12orf69 single-pass membrane protein with coiled-coil domains 3 protein-coding 570-30 chr10 85961312 85961771 + 2 NA intron (NM_017551, intron 4 of 15) (TCCT)n|Simple_repeat|Simple_repeat 303247 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 620-132 chr7 93133613 93134193 + 2 NA exon (NM_001303497, exon 6 of 6) exon (NM_001303497, exon 6 of 6) 14482 NM_001303498 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 482-228 chr6 102077527 102077883 + 2 NA Intergenic L2b|LINE|L2 678720 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 299-418 chr7 52468974 52469173 + 2 NA Intergenic L1MEc|LINE|L1 -566560 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 396-198 chr20 62761126 62761418 + 2 NA 3' UTR (NM_002531, exon 4 of 4) 3' UTR (NM_002531, exon 4 of 4) 15584 NR_046225 100652730 Hs.254951 NR_046224 LINC00659 - long intergenic non-protein coding RNA 659 ncRNA 172-105 chr5 108886921 108887088 + 2 NA intron (NR_146155, intron 8 of 19) intron (NR_146155, intron 8 of 19) -37602 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 329-344 chr22 47974054 47974228 + 2 NA Intergenic Intergenic -300223 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 410-296 chr8 37439046 37439296 + 2 NA intron (NR_121620, intron 3 of 6) L1MA2|LINE|L1 54742 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 240-286 chr3 72425326 72425533 + 2 NA intron (NM_012234, intron 1 of 3) L1ME1|LINE|L1 21194 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 143-52 chr22 24751566 24751675 + 2 NA intron (NM_001008496, intron 8 of 20) L1MB8|LINE|L1 -12881 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 305-152 chr14 61859396 61859619 + 2 NA intron (NM_001367656, intron 1 of 7) LTR9|LTR|ERV1 46804 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 225-64 chr11 107188731 107188913 + 2 NA Intergenic L1MA8|LINE|L1 -170346 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 257-401 chr8 27702005 27702227 + 2 NA promoter-TSS (NR_037418) promoter-TSS (NR_037418) -349 NR_037418 100500871 NR_037418 ENSG00000265075 MIR3622B - microRNA 3622b ncRNA 352-463 chr6 85180218 85180450 + 2 NA Intergenic Intergenic 209852 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 537-218 chr6 114905521 114906010 + 2 NA Intergenic Intergenic 738070 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 169-105 chr6 24945633 24945782 + 2 NA intron (NM_001286446, intron 1 of 13) L1M4|LINE|L1 -9747 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 332-142 chr13 73406425 73406709 + 2 NA Intergenic Intergenic -157677 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 214-182 chr2 235082809 235082980 + 2 NA Intergenic Intergenic 55159 NM_001371306 338-154 chr13 89450281 89450530 + 2 NA Intergenic Intergenic 50104 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 318-588 chrX 58446168 58446357 + 2 NA Intergenic ALR/Alpha|Satellite|centr -535629 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 379-394 chrX 97744764 97745088 + 2 NA Intergenic Intergenic -180391 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 335-363 chr3 128257525 128257805 + 2 NA intron (NM_021937, intron 2 of 6) Tigger13a|DNA|TcMar-Tigger -103751 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 399-112 chr17 4322120 4322410 + 2 NA intron (NM_003342, intron 1 of 5) intron (NM_003342, intron 1 of 5) 44409 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 383-44 chr11 7756254 7756494 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 40568 NM_153444 120065 Hs.351824 NM_153444 ENSG00000183303 OR5P2 JCG3|JCG4 olfactory receptor family 5 subfamily P member 2 protein-coding 398-152 chr2 9979259 9979565 + 2 NA intron (NM_198182, intron 8 of 15) AluJr|SINE|Alu 27719 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 736-71 chr5 79552120 79552521 + 2 NA Intergenic Intergenic -38186 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 627-109 chr7 36504588 36505128 + 2 NA Intergenic LTR12|LTR|ERV1 95262 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 448-204 chr5 27157651 27157959 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -119219 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 161-116 chr8 75757112 75757229 + 2 NA Intergenic Intergenic 217202 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 243-260 chr21 16705122 16705328 + 2 NA Intergenic Intergenic 114988 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 238-406 chr8 139551999 139552155 + 2 NA Intergenic Intergenic 151046 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 280-257 chr3 59872714 59872931 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) 208087 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 137-60 chr22 42461140 42461243 + 2 NA Intergenic Intergenic -23205 NM_001371362 232-345 chr7 14736599 14736769 + 2 NA intron (NM_001350724, intron 3 of 24) intron (NM_001350724, intron 3 of 24) 104766 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 403-328 chr9 133249477 133249844 + 2 NA TTS (NM_020469) TTS (NM_020469) 25541 NM_020469 28 Hs.654423 NM_020469 ENSG00000175164 ABO A3GALNT|A3GALT1|GTB|NAGAT ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase protein-coding 536-164 chr3 97345601 97346004 + 2 NA intron (NM_001080448, intron 5 of 17) LTR89|LTR|ERVL? -93805 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 236-393 chrX 53482792 53482999 + 2 NA Intergenic ERVL-int|LTR|ERVL -48519 NM_001037811 3028 Hs.171280 NM_004493 ENSG00000072506 HSD17B10 17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1 hydroxysteroid 17-beta dehydrogenase 10 protein-coding 602-90 chr3 148619136 148619574 + 2 NA Intergenic Intergenic -78516 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 302-224 chr2 123524693 123524865 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -451298 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 367-177 chr18 22373738 22373943 + 2 NA Intergenic L1ME1|LINE|L1 44075 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 399-95 chr14 72840288 72840642 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 52184 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 325-540 chr8 89585825 89586052 + 2 NA Intergenic L1PA14|LINE|L1 171773 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 345-75 chr10 109761004 109761271 + 2 NA Intergenic L1M1|LINE|L1 162109 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 322-190 chr16 62242596 62242804 + 2 NA Intergenic MLT2B1|LTR|ERVL -206262 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 325-575 chr9 79593725 79593982 + 2 NA intron (NM_001351556, intron 4 of 18) intron (NM_001351556, intron 4 of 18) 20676 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 369-10 chr1 98570961 98571220 + 2 NA Intergenic L1ME2|LINE|L1 -90631 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 471-95 chr15 89545663 89546048 + 2 NA Intergenic Intergenic -21821 NR_027076 283761 Hs.459288 NR_027074 LINC00928 - long intergenic non-protein coding RNA 928 ncRNA 378-121 chr13 91440852 91441146 + 2 NA intron (NM_004466, intron 1 of 7) L1MEb|LINE|L1 42378 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 375-214 chr2 103906639 103906931 + 2 NA Intergenic L2a|LINE|L2 501547 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 287-369 chr6 168018558 168018812 + 2 NA intron (NM_005355, intron 1 of 7) intron (NM_005355, intron 1 of 7) 812 NM_005355 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 266-143 chr16 77128173 77128380 + 2 NA Intergenic L1M3|LINE|L1 -62914 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 323-222 chr19 56005122 56005410 + 2 NA intron (NM_153447, intron 2 of 14) (TA)n|Simple_repeat|Simple_repeat 5540 NM_153447 126206 Hs.356872 NM_153447 ENSG00000171487 NLRP5 CLR19.8|MATER|NALP5|PAN11|PYPAF8 NLR family pyrin domain containing 5 protein-coding 314-99 chr11 70897568 70897761 + 2 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -25296 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 689-76 chr5 20322954 20323412 + 2 NA intron (NR_146519, intron 1 of 1) intron (NR_146519, intron 1 of 1) 17632 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 365-3 chr1 50219365 50219669 + 2 NA Intergenic Intergenic 109684 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 670-29 chr12 28610169 28610743 + 2 NA Intergenic Intergenic -419718 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 116-28 chr3 114176148 114176231 + 2 NA 5' UTR (NM_001290809, exon 2 of 8) 5' UTR (NM_001290809, exon 2 of 8) 2587 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 988-28 chr5 24065904 24066691 + 2 NA intron (NR_131245, intron 4 of 4) L1PA13|LINE|L1 114949 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 417-290 chr8 132015387 132015626 + 2 NA Intergenic Intergenic 43876 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 475-253 chr7 9379517 9379910 + 2 NA Intergenic L1M5|LINE|L1 -254557 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 357-314 chr4 75238322 75238646 + 2 NA Intergenic (TAGTATA)n|Simple_repeat|Simple_repeat -115592 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 377-420 chr8 135029060 135029343 + 2 NA Intergenic L1MB4|LINE|L1 179266 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 312-279 chr20 910250 910551 + 2 NA intron (NM_015985, intron 1 of 8) MIRc|SINE|MIR 5934 NM_015985 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 208-216 chr5 128031360 128031513 + 2 NA intron (NR_152812, intron 4 of 4) L1M3|LINE|L1 51739 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 410-206 chr4 12069392 12069657 + 2 NA Intergenic Intergenic -153927 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 327-485 chr8 70752323 70752566 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR 83105 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 587-170 chr8 128949508 128950081 + 2 NA Intergenic Intergenic 16207 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 322-490 chr7 51284288 51284607 + 2 NA intron (NM_015198, intron 1 of 12) L1PA16|LINE|L1 32362 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 350-380 chr5 7050993 7051189 + 2 NA Intergenic Intergenic 218263 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 461-160 chr21 27622964 27623394 + 2 NA Intergenic Intergenic -99200 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 373-315 chr5 31090639 31090925 + 2 NA Intergenic Intergenic -102904 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 266-217 chr20 39318444 39318612 + 2 NA Intergenic Tigger8|DNA|TcMar-Tigger -93780 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 506-195 chr3 196863685 196864062 + 2 NA Intergenic L1PA16|LINE|L1 -3983 NM_001308045 205564 Hs.240770 NM_152699 ENSG00000119231 SENP5 - SUMO specific peptidase 5 protein-coding 550-12 chr1 187539602 187540106 + 2 NA Intergenic Intergenic 96226 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 399-102 chr15 93725835 93726138 + 2 NA Intergenic L1ME3D|LINE|L1 -130574 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 353-63 chr10 67338350 67338569 + 2 NA intron (NM_001127384, intron 5 of 17) MSTB|LTR|ERVL-MaLR 64951 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 238-53 chr10 108084961 108085155 + 2 NA Intergenic Intergenic -15765 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 474-24 chr1 232194926 232195219 + 2 NA Intergenic LTR85b|LTR|Gypsy? 269238 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 484-125 chr2 50698604 50699055 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -2567 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 220-149 chr2 3089024 3089190 + 2 NA intron (NR_110228, intron 3 of 6) L1MB5|LINE|L1 36919 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 348-301 chr3 83391592 83391804 + 2 NA Intergenic Intergenic 1405556 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 481-54 chr11 57023970 57024310 + 2 NA Intergenic Intergenic -13394 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 211-65 chr12 63832069 63832250 + 2 NA Intergenic Intergenic 8496 NR_162118 113218505 NR_162118 MIR10527 - microRNA 10527 ncRNA 348-471 chr6 138764822 138765118 + 2 NA intron (NR_161205, intron 1 of 2) intron (NR_161205, intron 1 of 2) -8550 NM_015439 25901 Hs.412019 NM_015439 ENSG00000024862 CCDC28A C6orf80|CCRL1AP coiled-coil domain containing 28A protein-coding 281-380 chr5 166354162 166354338 + 2 NA Intergenic Intergenic 572120 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 309-45 chr10 41729106 41729352 + 2 NA Intergenic ALR/Alpha|Satellite|centr 638816 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 223-105 chr15 99957554 99957730 + 2 NA Intergenic L1MEi|LINE|L1 150619 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 283-47 chr10 23948308 23948486 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 253670 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 332-550 chr8 127790616 127790858 + 2 NA Intergenic Intergenic -3796 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 337-445 chr5 45423508 45423843 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 272705 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 211-228 chr5 28453987 28454170 + 2 NA Intergenic Intergenic -166413 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 332-164 chr15 61176040 61176280 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 53142 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 262-127 chr14 58461216 58461433 + 2 NA intron (NM_001329944, intron 14 of 31) intron (NM_001329944, intron 14 of 31) 21643 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 274-43 chr10 56945509 56945682 + 2 NA Intergenic Intergenic 358964 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 338-153 chr13 85676104 85676314 + 2 NA Intergenic Intergenic 123210 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 291-385 chr6 69399349 69399584 + 2 NA Intergenic Intergenic 397000 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 169-13 chr10 130814587 130814701 + 2 NA Intergenic Intergenic 148024 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 309-371 chr3 177703388 177703589 + 2 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -113377 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 267-162 chr18 76000800 76000958 + 2 NA Intergenic Intergenic -122119 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 643-131 chr8 114397353 114397784 + 2 NA Intergenic L1PA16|LINE|L1 -960629 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 356-31 chr1 224081334 224081663 + 2 NA Intergenic MIR3|SINE|MIR -32613 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 331-473 chr6 147157561 147157819 + 2 NA intron (NR_034115, intron 3 of 10) intron (NR_034115, intron 3 of 10) -1235 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 248-61 chr11 28503232 28503447 + 2 NA Intergenic Intergenic -25791 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 267-62 chr10 131799399 131799592 + 2 NA Intergenic L1ME1|LINE|L1 -9296 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 217-319 chr6 23812631 23812810 + 2 NA Intergenic L1MEc|LINE|L1 -313495 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 372-323 chr3 36833940 36834274 + 2 NA intron (NM_001329998, intron 21 of 23) intron (NM_001329998, intron 21 of 23) -11607 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 338-473 chr6 93813540 93813773 + 2 NA Intergenic L1MEc|LINE|L1 95353 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 240-126 chr13 92887010 92887238 + 2 NA Intergenic Intergenic -158217 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 286-377 chr6 2465131 2465336 + 2 NA Intergenic AluSx1|SINE|Alu -169267 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 314-308 chr2 150682007 150682235 + 2 NA Intergenic MIR3|SINE|MIR 53224 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 259-294 chr4 118344388 118344642 + 2 NA intron (NM_003619, intron 1 of 12) intron (NM_003619, intron 1 of 12) 8488 NM_003619 8492 Hs.445857 NM_003619 ENSG00000164099 PRSS12 BSSP-3|BSSP3|MRT1 serine protease 12 protein-coding 341-416 chr5 7123324 7123505 + 2 NA Intergenic L1PA16|LINE|L1 145940 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 519-31 chr11 37223015 37223383 + 2 NA Intergenic L1M8|LINE|L1 -624920 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 282-129 chr14 61977815 61978041 + 2 NA intron (NM_001367657, intron 3 of 6) MLT1C|LTR|ERVL-MaLR 50233 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 427-155 chr3 56315388 56315804 + 2 NA intron (NR_132749, intron 2 of 17) intron (NR_132749, intron 2 of 17) 152871 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 309-86 chr11 79585720 79585939 + 2 NA Intergenic AluSx1|SINE|Alu -144799 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 349-249 chr2 40579816 40580055 + 2 NA Intergenic L1MB7|LINE|L1 -67500 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 519-201 chr6 141426196 141426556 + 2 NA Intergenic L1ME3A|LINE|L1 662423 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 204-281 chr8 64139458 64139654 + 2 NA intron (NR_125826, intron 3 of 4) L1MA4|LINE|L1 229002 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 438-290 chr9 6242373 6242683 + 2 NA intron (NM_001199641, intron 2 of 4) MER75|DNA|PiggyBac 5447 NM_001314045 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 287-16 chr1 104893488 104893728 + 2 NA Intergenic L1M4b|LINE|L1 725327 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 206-122 chr2 116378950 116379151 + 2 NA Intergenic Intergenic 1035235 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 323-246 chr2 59982430 59982655 + 2 NA Intergenic Charlie17a|DNA|hAT-Charlie 400494 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 562 chr1 5609423 5609820 + 2 NA Intergenic L1ME2|LINE|L1 253120 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 155-26 chr11 12393111 12393262 + 2 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 15615 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 289-436 chr7 33530915 33531079 + 2 NA intron (NM_198428, intron 20 of 22) AluSq2|SINE|Alu -373918 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 337-7 chr1 65909083 65909314 + 2 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) -4047 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 858-23 chr19 56557785 56558364 + 2 NA Intergenic L1ME4b|LINE|L1 -9394 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 506-223 chr5 15126002 15126505 + 2 NA Intergenic L1MD3|LINE|L1 140307 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 205-70 chr12 94749138 94749284 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -85187 NR_030171 574449 NR_030171 ENSG00000283998 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 134-46 chr2 161078725 161078844 + 2 NA Intergenic Intergenic -58171 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 389-200 chr2 240343690 240344026 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -91805 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 240-62 chr10 98477061 98477266 + 2 NA intron (NM_001166246, intron 11 of 12) MIRc|SINE|MIR -30200 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 440-136 chr2 226384141 226384490 + 2 NA Intergenic Intergenic 241521 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 219-229 chr3 64393507 64393653 + 2 NA Intergenic Intergenic -125407 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 171-54 chr2 79206087 79206195 + 2 NA Intergenic Intergenic -46388 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 316-69 chr10 57776734 57777032 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -472324 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 466-145 chr2 149427012 149427330 + 2 NA intron (NM_194317, intron 1 of 4) intron (NM_194317, intron 1 of 4) 96584 NM_194317 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 348-154 chr15 49948509 49948703 + 2 NA intron (NR_073597, intron 14 of 26) L1PA10|LINE|L1 164773 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 320-497 chr6 151988815 151988978 + 2 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 179391 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 367-274 chr3 23149285 23149637 + 2 NA Intergenic L1M3|LINE|L1 53117 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 323-21 chr1 106342015 106342228 + 2 NA Intergenic L1MC3|LINE|L1 -313868 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 240-390 chr7 418813 419026 + 2 NA Intergenic Intergenic 39494 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 177-15 chr10 26793624 26793767 + 2 NA intron (NM_001012752, intron 2 of 9) intron (NM_001012752, intron 2 of 9) 67392 NM_001348029 10006 Hs.508148 NM_005470 ENSG00000136754 ABI1 ABI-1|ABLBP4|E3B1|NAP1BP|SSH3BP|SSH3BP1 abl interactor 1 protein-coding 384-335 chr6 165902798 165903048 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -84628 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 218-259 chr5 15940541 15940701 + 2 NA TTS (NM_012304) TTS (NM_012304) 5439 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 312-330 chr3 66666851 66667068 + 2 NA Intergenic Intergenic 71377 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 318-219 chr18 41865120 41865340 + 2 NA Intergenic Intergenic -90004 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 327-521 chr9 35840823 35841016 + 2 NA intron (NM_001042589, intron 4 of 13) intron (NM_001042589, intron 4 of 13) 11691 NM_001363620 51754 Hs.9187 NM_016446 ENSG00000137103 TMEM8B C9orf127|FP588|LINC00950|NAG-5|NAG5|NGX6 transmembrane protein 8B protein-coding 320-228 chr18 52258247 52258486 + 2 NA Intergenic Intergenic -81831 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 412-178 chr20 3388192 3388463 + 2 NA intron (NM_001009984, intron 1 of 36) L1MB2|LINE|L1 19335 NM_001009984 25943 Hs.516853 NM_001009984 ENSG00000088854 C20orf194 - chromosome 20 open reading frame 194 protein-coding 286-265 chr3 2523060 2523274 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 284338 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 288-269 chr3 98115771 98115978 + 2 NA Intergenic Intergenic -16824 NM_001005338 26341 Hs.537383 NM_001005338 ENSG00000231192 OR5H1 HSHTPCRX14|HTPCRX14 olfactory receptor family 5 subfamily H member 1 protein-coding 479-25 chr10 60600103 60600435 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -27313 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 257-4 chr1 51806109 51806285 + 2 NA intron (NM_001101662, intron 18 of 30) intron (NM_001101662, intron 18 of 30) 30205 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 326-336 chr3 77092737 77092934 + 2 NA intron (NM_001290039, intron 1 of 26) intron (NM_001290039, intron 1 of 26) -5177 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 151-61 chr5 17770539 17770655 + 2 NA Intergenic Intergenic -36677 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 190-112 chr22 47414357 47414542 + 2 NA Intergenic L1M4|LINE|L1 68878 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 550-186 chr5 124977066 124977511 + 2 NA Intergenic MER57E1|LTR|ERV1 -59543 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 241-426 chr9 80294310 80294488 + 2 NA Intergenic MER110|LTR|ERV1 319376 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 140-40 chr2 153978297 153978385 + 2 NA intron (NM_052917, intron 3 of 12) MIR|SINE|MIR 33947 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 257-31 chr1 244771507 244771695 + 2 NA Intergenic Intergenic -63705 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 360-56 chr10 111963150 111963388 + 2 NA Intergenic (AATAA)n|Simple_repeat|Simple_repeat 220496 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 356-4 chr1 21794832 21795031 + 2 NA Intergenic L2|LINE|L2 -11732 NM_001330394 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 256-190 chr2 34376679 34376883 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -300776 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 343-307 chr20 59908732 59909005 + 2 NA intron (NM_014258, intron 14 of 44) intron (NM_014258, intron 14 of 44) 24769 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 294-361 chr5 10961035 10961267 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -199917 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 292-441 chr8 114517121 114517348 + 2 NA Intergenic L1MC4|LINE|L1 -1080295 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 387-366 chr8 92318123 92318373 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -214863 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 329-215 chr17 55628150 55628408 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 94585 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 233-39 chr10 57792577 57792745 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 475233 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 213-281 chr8 104749958 104750128 + 2 NA Intergenic L2c|LINE|L2 -161019 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 326-501 chr7 62597774 62598005 + 2 NA Intergenic ALR/Alpha|Satellite|centr 706167 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 317-72 chr11 4932623 4932909 + 2 NA Intergenic Intergenic -8427 NM_001005237 79324 Hs.554541 NM_001005237 ENSG00000278870 OR51G1 OR11-29|OR51G3P olfactory receptor family 51 subfamily G member 1 (gene/pseudogene) protein-coding 505-213 chr4 36469927 36470254 + 2 NA Intergenic Intergenic -43662 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 431-101 chr16 84321147 84321521 + 2 NA intron (NM_001282467, intron 4 of 6) intron (NM_001282467, intron 4 of 6) 26456 NM_021197 58189 Hs.36688 NM_021197 ENSG00000103175 WFDC1 PS20 WAP four-disulfide core domain 1 protein-coding 512-53 chr11 107082266 107082650 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -63982 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 251-361 chr7 24648932 24649136 + 2 NA intron (NM_016447, intron 4 of 12) intron (NM_016447, intron 4 of 12) 75582 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 312-33 chr10 19866098 19866329 + 2 NA intron (NM_032812, intron 1 of 13) MLT1D|LTR|ERVL-MaLR 49781 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 656-93 chr5 26527825 26528295 + 2 NA Intergenic Intergenic 510526 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 505-239 chr5 46121967 46122334 + 2 NA Intergenic ALR/Alpha|Satellite|centr -425770 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 238-65 chr11 30070479 30070678 + 2 NA Intergenic Intergenic -53548 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 174-70 chr2 205574429 205574540 + 2 NA intron (NM_205863, intron 21 of 21) intron (NM_205863, intron 21 of 21) -108016 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 467-299 chr9 78684180 78684618 + 2 NA Intergenic Intergenic 387274 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 372-382 chr5 3374393 3374673 + 2 NA Intergenic Intergenic -78283 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 411-53 chr11 25592024 25592341 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -596941 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 203-209 chr6 169357406 169357584 + 2 NA Intergenic L1MEf|LINE|L1 -103381 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 350-96 chr12 34542111 34542444 + 2 NA Intergenic ALR/Alpha|Satellite|centr 519781 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 231-194 chr20 60071173 60071388 + 2 NA non-coding (NR_161291, exon 4 of 4) non-coding (NR_161291, exon 4 of 4) 15355 NR_161291 284756 Hs.335319 NR_126504 ENSG00000176659 C20orf197 - chromosome 20 open reading frame 197 ncRNA 532-29 chr11 13541405 13541878 + 2 NA Intergenic L1PB2|LINE|L1 -45466 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 190-182 chr8 127649750 127649920 + 2 NA Intergenic MIRb|SINE|MIR 84132 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 426-12 chr1 174390744 174391040 + 2 NA intron (NM_001366445, intron 12 of 13) intron (NM_001366445, intron 12 of 13) -57072 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 349-145 chr13 66189218 66189427 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -28928 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 237-37 chr10 87744427 87744631 + 2 NA intron (NM_001015880, intron 11 of 12) intron (NM_001015880, intron 11 of 12) 73702 NM_032810 84896 Hs.435948 NM_032810 ENSG00000138138 ATAD1 AFDC1|FNP001|HKPX4|THORASE ATPase family AAA domain containing 1 protein-coding 321-602 chr9 98632162 98632386 + 2 NA intron (NM_005458, intron 1 of 18) MIRb|SINE|MIR 76661 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 268-37 chr10 32605719 32605974 + 2 NA intron (NM_001321115, intron 19 of 43) MSTB-int|LTR|ERVL-MaLR 159706 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 542-138 chr3 94912557 94912941 + 2 NA Intergenic Intergenic -25514 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 232-340 chr6 157781507 157781656 + 2 NA Intergenic Intergenic -41665 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 418-48 chr11 97412915 97413261 + 2 NA Intergenic L1M3e|LINE|L1 904663 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 516-62 chr13 67313438 67313788 + 2 NA Intergenic Intergenic -58774 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 374-288 chr4 179293680 179293911 + 2 NA Intergenic Intergenic -1385859 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 294-380 chr5 81598401 81598678 + 2 NA intron (NM_012446, intron 4 of 16) MLT1G3|LTR|ERVL-MaLR 152714 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 320-541 chr8 68420519 68420720 + 2 NA intron (NR_146187, intron 1 of 13) L1MEg|LINE|L1 -89128 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 242-389 chr8 50943316 50943516 + 2 NA Intergenic MIRb|SINE|MIR 779285 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 277-247 chr3 27772928 27773186 + 2 NA Intergenic Intergenic -24531 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 327-191 chr16 79498581 79498791 + 2 NA Intergenic MIR|SINE|MIR 102051 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 201-94 chr16 18016870 18017032 + 2 NA Intergenic L1PB4|LINE|L1 315711 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 328-297 chr2 208955714 208956015 + 2 NA Intergenic LOR1-int|LTR|ERV1 413222 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 433-66 chr12 100378778 100379027 + 2 NA intron (NM_001145288, intron 1 of 10) L2b|LINE|L2 21828 NM_139319 246213 Hs.116871 NM_139319 ENSG00000179520 SLC17A8 DFNA25|VGLUT3 solute carrier family 17 member 8 protein-coding 170-3 chr1 52303244 52303379 + 2 NA intron (NM_007324, intron 11 of 17) L2b|LINE|L2 62894 NM_032449 200014 Hs.591451 NM_032449 ENSG00000154222 CC2D1B - coiled-coil and C2 domain containing 1B protein-coding 829-36 chr5 178444941 178445534 + 2 NA intron (NM_173465, intron 2 of 28) L1M5|LINE|L1 145156 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 492-197 chr4 137346550 137347028 + 2 NA Intergenic Intergenic -133990 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 200-181 chr3 135643212 135643360 + 2 NA Intergenic LTR106_Mam|LTR|LTR -322442 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 179-87 chr4 101758778 101758908 + 2 NA Intergenic Intergenic -31764 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 299-380 chr5 109214731 109214918 + 2 NA Intergenic Intergenic 111545 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 275-282 chr5 16052787 16053013 + 2 NA Intergenic L1ME2|LINE|L1 117718 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 346-370 chr4 162443903 162444199 + 2 NA Intergenic L2c|LINE|L2 -280017 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 322-323 chr3 44644702 44644930 + 2 NA non-coding (NR_147692, exon 8 of 8) non-coding (NR_147692, exon 8 of 8) -3916 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 338-44 chr10 10888496 10888803 + 2 NA intron (NM_001326328, intron 2 of 15) L2c|LINE|L2 63514 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 604-156 chr7 109883701 109884162 + 2 NA Intergenic L3|LINE|CR1 76282 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 462-164 chr21 30955807 30956132 + 2 NA Intergenic Intergenic -74389 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 255-165 chr18 412049 412233 + 2 NA intron (NM_130386, intron 2 of 9) L1MD1|LINE|L1 88560 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 467-288 chr8 136726050 136726368 + 2 NA intron (NR_147196, intron 2 of 5) (TA)n|Simple_repeat|Simple_repeat 195411 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 358-354 chr4 177874317 177874627 + 2 NA intron (NR_108092, intron 1 of 1) L1ME1|LINE|L1 33464 NR_108093 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 577-189 chr8 64139885 64140458 + 2 NA intron (NR_125826, intron 3 of 4) L1MA4|LINE|L1 228387 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 194-76 chr17 10591199 10591345 + 2 NA intron (NR_125367, intron 5 of 10) intron (NR_125367, intron 5 of 10) -41614 NM_017534 4620 Hs.667534 NM_017534 ENSG00000125414 MYH2 IBM3|MYH2A|MYHSA2|MYHas8|MYPOP|MyHC-2A|MyHC-IIa myosin heavy chain 2 protein-coding 199-241 chr8 108411890 108412007 + 2 NA Intergenic Intergenic -31635 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 316-396 chr4 65844062 65844282 + 2 NA Intergenic Intergenic -173677 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 423-238 chr6 930911 931192 + 2 NA Intergenic L1ME3Cz|LINE|L1 62553 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 377-81 chr12 12199408 12199721 + 2 NA intron (NM_002336, intron 3 of 22).2 intron (NM_002336, intron 3 of 22).2 67480 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 305-143 chr13 114091363 114091663 + 2 NA intron (NM_001320821, intron 1 of 25).2 L1M1|LINE|L1 -13558 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 233-339 chr6 89022824 89023015 + 2 NA Intergenic Intergenic -57832 NM_006813 10957 Hs.75969 NM_006813 ENSG00000146278 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline rich nuclear receptor coactivator 1 protein-coding 196-278 chrX 81893806 81893923 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 691762 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 228-161 chr2 55470524 55470678 + 2 NA Intergenic L1MB5|LINE|L1 -48994 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 383-362 chr7 72060553 72060908 + 2 NA intron (NM_001363460, intron 3 of 5) MSTB|LTR|ERVL-MaLR 276661 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 504-133 chr2 112315993 112316423 + 2 NA intron (NM_198581, intron 5 of 11) intron (NM_198581, intron 5 of 11) 40611 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 246-145 chr16 82661781 82661926 + 2 NA intron (NM_001220488, intron 2 of 14) L1MD|LINE|L1 -27078 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 353-234 chr2 16207414 16207667 + 2 NA Intergenic LTR8A|LTR|ERV1 157113 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 224-118 chr17 69789732 69789900 + 2 NA intron (NR_109972, intron 3 of 4) MLT1G3-int|LTR|ERVL-MaLR -171891 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 328-115 chr12 89773266 89773445 + 2 NA Intergenic MLT2B4|LTR|ERVL -63989 NM_001366530 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 253-249 chr3 29203490 29203666 + 2 NA Intergenic L2a|LINE|L2 77361 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 694-106 chr5 148994877 148995450 + 2 NA 3' UTR (NM_024577, exon 17 of 17) 3' UTR (NM_024577, exon 17 of 17) 67246 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 339-401 chr4 45182958 45183216 + 2 NA Intergenic Intergenic -456453 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 545-210 chr6 140640895 140641275 + 2 NA Intergenic L1ME3F|LINE|L1 -42729 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 527-15 chr1 236579898 236580342 + 2 NA intron (NM_018072, intron 20 of 44) Tigger18a|DNA|TcMar-Tigger 24396 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 176-66 chr2 220977931 220978063 + 2 NA Intergenic L2c|LINE|L2 594307 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 373-145 chr16 52728114 52728387 + 2 NA Intergenic Intergenic -121275 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 311-409 chr5 68362303 68362554 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 69851 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 119-33 chr2 97954938 97955020 + 2 NA intron (NM_015348, intron 1 of 40) L1MDa|LINE|L1 40969 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 424-302 chrX 136464124 136464387 + 2 NA Intergenic L1MD2|LINE|L1 -23692 NM_001727 680 Hs.121484 NM_001727 ENSG00000102239 BRS3 BB3|BB3R|BBR3 bombesin receptor subtype 3 protein-coding 911-9 chr15 26497225 26497998 + 2 NA Intergenic L1MA2|LINE|L1 131479 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 463-208 chr4 52149214 52149538 + 2 NA Intergenic AluJb|SINE|Alu 98072 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 224-234 chr4 163654898 163655034 + 2 NA intron (NM_001166373, intron 4 of 7) L1MEd|LINE|L1 -41432 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 248-283 chr4 80556927 80557146 + 2 NA intron (NM_152770, intron 2 of 5) LOR1-int|LTR|ERV1 221316 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 264-373 chr6 154806181 154806403 + 2 NA intron (NM_014892, intron 9 of 19) intron (NM_014892, intron 9 of 19) -47068 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 449-232 chr6 44364611 44364928 + 2 NA intron (NM_145026, intron 5 of 8) (TCTT)n|Simple_repeat|Simple_repeat 22109 NM_145026 221409 Hs.135283 NM_145026 ENSG00000249481 SPATS1 DDIP|SPATA8|SRSP1 spermatogenesis associated serine rich 1 protein-coding 359-92 chr11 76844496 76844705 + 2 NA Intergenic Merlin1_HS|DNA|Merlin -16318 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 211-266 chr6 161223649 161223839 + 2 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) 50317 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 307-92 chr11 99972735 99972969 + 2 NA intron (NM_001243270, intron 7 of 23) intron (NM_001243270, intron 7 of 23) 416707 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 305-494 chr7 6660496 6660748 + 2 NA Intergenic AluJo|SINE|Alu 23304 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 568-22 chr11 1324129 1324620 + 2 NA Intergenic L1M5|LINE|L1 14666 NR_029409 255512 Hs.588291 NR_029409 ENSG00000255153 TOLLIP-AS1 - TOLLIP antisense RNA 1 (head to head) ncRNA 332 chr1 11215143 11215461 + 2 NA intron (NM_004958, intron 20 of 57) intron (NM_004958, intron 20 of 57) 25947 NM_021146 10218 Hs.146559 NM_021146 ENSG00000171819 ANGPTL7 AngX|CDT6|dJ647M16.1 angiopoietin like 7 protein-coding 225-316 chr7 628594 628768 + 2 NA intron (NM_001164760, intron 4 of 10) intron (NM_001164760, intron 4 of 10) 25283 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 167-98 chr5 117692894 117693030 + 2 NA Intergenic Intergenic -37399 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 540-185 chr6 145281773 145282177 + 2 NA Intergenic Intergenic 404902 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 280-352 chr6 71807084 71807332 + 2 NA Intergenic Intergenic -79495 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 228-61 chr12 2591788 2591975 + 2 NA intron (NM_199460, intron 18 of 49).2 MLT1C|LTR|ERVL-MaLR 80339 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 515-225 chr5 172710863 172711325 + 2 NA Intergenic L1M5|LINE|L1 -44409 NR_161233 101928093 Hs.646902 NR_161233 LOC101928093 - uncharacterized LOC101928093 ncRNA 437-272 chr8 78127879 78128204 + 2 NA Intergenic Intergenic -388299 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 300-429 chr7 52679903 52680054 + 2 NA Intergenic L1MEg|LINE|L1 -355655 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 345-251 chr2 52572216 52572546 + 2 NA Intergenic CpG 130234 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 214-13 chr1 66808631 66808788 + 2 NA Intergenic L1MA9|LINE|L1 -7450 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 304-367 chr3 192290606 192290863 + 2 NA intron (NM_004113, intron 4 of 5) intron (NM_004113, intron 4 of 5) 52104 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 182-58 chr14 81072232 81072364 + 2 NA intron (NM_001142626, intron 3 of 8) intron (NM_001142626, intron 3 of 8) 116677 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 368-80 chr11 75119004 75119267 + 2 NA Intergenic Intergenic -22245 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 768-43 chr6 142667767 142668248 + 2 NA Intergenic Intergenic -30118 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 393-364 chr8 120597071 120597314 + 2 NA intron (NM_021021, intron 3 of 6) MLT1D|LTR|ERVL-MaLR 151773 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 287-96 chr11 92175551 92175736 + 2 NA Intergenic Intergenic -49391 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 453-163 chr3 80252179 80252612 + 2 NA Intergenic Intergenic -484397 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 299-345 chr4 171103601 171103785 + 2 NA Intergenic L1MB2|LINE|L1 63091 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 330-48 chr10 9005896 9006088 + 2 NA Intergenic Intergenic 108003 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 289-408 chr6 20832321 20832556 + 2 NA intron (NM_017774, intron 8 of 15) AluJo|SINE|Alu 297981 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 528-107 chr17 9336998 9337494 + 2 NA intron (NM_004853, intron 7 of 7) intron (NM_004853, intron 7 of 7) -158128 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 600-59 chr2 18059416 18059874 + 2 NA Intergenic Intergenic 180978 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 200-151 chr2 240630839 240631013 + 2 NA 3' UTR (NM_001195382, exon 6 of 6) 3' UTR (NM_001195382, exon 6 of 6) 5681 NM_005301 2859 Hs.112218 NM_005301 ENSG00000178623 GPR35 - G protein-coupled receptor 35 protein-coding 257-258 chr22 30979088 30979267 + 2 NA non-coding (NR_152867, exon 4 of 4) non-coding (NR_152867, exon 4 of 4) 9966 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 482-38 chr10 81843183 81843496 + 2 NA Intergenic Intergenic -31855 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 845-16 chr2 58293102 58293662 + 2 NA intron (NR_147010, intron 1 of 2) intron (NR_147010, intron 1 of 2) 17505 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 222-324 chr6 65055349 65055515 + 2 NA intron (NM_001292009, intron 13 of 43) L1MC3|LINE|L1 -245986 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 345-68 chr10 66962551 66962832 + 2 NA intron (NM_178011, intron 2 of 2) AluSc5|SINE|Alu 36655 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 189-28 chr11 62268735 62268854 + 2 NA Intergenic L2b|LINE|L2 -1364 NM_002411 4250 Hs.46452 NM_002411 ENSG00000110484 SCGB2A2 MGB1|UGB2 secretoglobin family 2A member 2 protein-coding 410-295 chr8 26974538 26974877 + 2 NA Intergenic AluSq2|SINE|Alu 74256 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 290-153 chr16 12853435 12853609 + 2 NA Intergenic Intergenic -48076 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 463-303 chr9 24052400 24052840 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -202019 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 321-364 chr3 21247294 21247497 + 2 NA Intergenic L1MCa|LINE|L1 -158331 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 595-10 chr1 185620979 185621540 + 2 NA intron (NR_110793, intron 2 of 3) L1MC1|LINE|L1 7229 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 322-338 chr3 99570819 99571056 + 2 NA Intergenic Intergenic -67657 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 548-144 chr3 54524616 54525026 + 2 NA intron (NM_018398, intron 5 of 37) L1MB8|LINE|L1 115036 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 353-173 chr16 26191103 26191448 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 166038 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 182-98 chr2 166026317 166026440 + 2 NA intron (NR_110598, intron 2 of 3) intron (NR_110598, intron 2 of 3) -55153 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 471-81 chr14 60470402 60470808 + 2 NA intron (NM_174978, intron 7 of 17) intron (NM_174978, intron 7 of 17) 15458 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 653-116 chr7 98100567 98101063 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -6047 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 328-355 chr3 84121240 84121510 + 2 NA Intergenic Intergenic 748200 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 321-223 chr16 82729132 82729345 + 2 NA intron (NM_001220488, intron 2 of 14) Tigger1|DNA|TcMar-Tigger 40307 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 407-115 chr17 72299906 72300251 + 2 NA Intergenic Intergenic -42733 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 311-174 chr16 31914281 31914489 + 2 NA intron (NR_049749, intron 4 of 4) intron (NR_049749, intron 4 of 4) 40578 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 304-53 chr10 62620797 62621032 + 2 NA intron (NM_199452, intron 1 of 6) (A)n|Simple_repeat|Simple_repeat 100466 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 501-248 chr7 93107061 93107552 + 2 NA intron (NM_001193307, intron 1 of 1) LTR102_Mam|LTR|ERVL 10673 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 129-39 chr2 102044299 102044380 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -26051 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 167-15 chr1 227082121 227082220 + 2 NA intron (NM_001366019, intron 16 of 36) AluJo|SINE|Alu 141876 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 280-53 chr10 66503024 66503288 + 2 NA intron (NM_001127384, intron 11 of 17) MIR|SINE|MIR -422880 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 268-140 chr16 26330640 26330902 + 2 NA Intergenic L1MC2|LINE|L1 305534 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 210-28 chr10 48936293 48936440 + 2 NA intron (NM_020945, intron 47 of 61) intron (NM_020945, intron 47 of 61) -22131 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 315-340 chr4 62256621 62256887 + 2 NA Intergenic Intergenic -94989 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 298-433 chr7 49929092 49929253 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 153839 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 346-453 chr7 7094836 7095163 + 2 NA non-coding (NR_034022, exon 1 of 1) non-coding (NR_034022, exon 1 of 1) 1787 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 375-2 chr1 23356490 23356696 + 2 NA Intergenic L2c|LINE|L2 11793 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 415-95 chr17 43786619 43786958 + 2 NA 3' UTR (NM_001353400, exon 5 of 5) 3' UTR (NM_001353400, exon 5 of 5) 6353 NM_001136483 284067 Hs.252707 NM_001136483 ENSG00000231256 CFAP97D1 C17orf105 CFAP97 domain containing 1 protein-coding 305-33 chr1 164835207 164835495 + 2 NA intron (NM_001353131, intron 7 of 7) L1ME4a|LINE|L1 -60710 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 247-202 chr2 83405796 83405967 + 2 NA Intergenic Intergenic -116933 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 508-213 chr6 138077210 138077558 + 2 NA Intergenic L1PA10|LINE|L1 30035 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 371-355 chr7 25242814 25243079 + 2 NA Intergenic Intergenic -14460 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 229-54 chr11 12195237 12195396 + 2 NA intron (NR_144420, intron 3 of 27) L1ME2z|LINE|L1 31633 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 335-405 chr5 3334194 3334450 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -118494 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 390-427 chr9 118109294 118109583 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 405035 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 310-237 chr2 66859595 66859884 + 2 NA Intergenic MIRc|SINE|MIR -44697 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 546-227 chr7 96403774 96404201 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -81840 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 290-234 chr2 216508228 216508427 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 9483 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 200-150 chr2 236523208 236523371 + 2 NA Intergenic Intergenic -15754 NM_001270584 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 325-446 chr5 79051733 79052052 + 2 NA intron (NM_013391, intron 4 of 15) L2b|LINE|L2 17782 NR_104002 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 422-43 chr11 80936944 80937313 + 2 NA Intergenic L2b|LINE|L2 -174325 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 231-99 chr14 80821051 80821259 + 2 NA intron (NM_152446, intron 13 of 24) intron (NM_152446, intron 13 of 24) 120583 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 257-7 chr1 70512184 70512391 + 2 NA Intergenic HAL1|LINE|L1 101019 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 281-62 chr11 39762290 39762493 + 2 NA Intergenic Intergenic 530739 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 553-57 chr13 99767361 99767730 + 2 NA intron (NR_120421, intron 3 of 4) L1M4c|LINE|L1 -38544 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 332-221 chr19 12302999 12303302 + 2 NA Intergenic L1M4c|LINE|L1 -8251 NM_001353553 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 667-51 chr2 117298117 117298653 + 2 NA Intergenic L1PBb|LINE|L1 -516306 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 378-309 chr4 64438679 64438903 + 2 NA Intergenic Intergenic -29331 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 429-81 chr13 78875284 78875548 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -35366 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 294-310 chr3 146413834 146414027 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 55371 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 407-127 chr19 36871950 36872278 + 2 NA intron (NM_001242476, intron 3 of 3) L1MC4|LINE|L1 20463 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 372-31 chr1 208308015 208308238 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -63742 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 421-207 chr4 35727250 35727534 + 2 NA Intergenic (GTT)n|Simple_repeat|Simple_repeat 516547 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 285-170 chr18 69435973 69436147 + 2 NA intron (NM_152721, intron 1 of 7) HAL1b|LINE|L1 -33871 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 328-426 chr4 172625732 172625922 + 2 NA intron (NM_001034845, intron 5 of 12) L1PA16|LINE|L1 63090 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 242-221 chr21 26837449 26837630 + 2 NA 3' UTR (NM_006988, exon 9 of 9) 3' UTR (NM_006988, exon 9 of 9) 7870 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 215-145 chr2 59633038 59633219 + 2 NA Intergenic L3|LINE|CR1 415420 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 515-226 chr6 10852059 10852395 + 2 NA Intergenic L1MEb|LINE|L1 -13672 NM_001242385 4117 Hs.446125 NM_005906 ENSG00000111837 MAK RP62 male germ cell associated kinase protein-coding 280-186 chr2 20359586 20359805 + 2 NA Intergenic L1MB7|LINE|L1 -7442 NM_001352920 23369 Hs.467824 NM_015317 ENSG00000055917 PUM2 PUMH2|PUML2 pumilio RNA binding family member 2 protein-coding 238-343 chr6 164951035 164951211 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -129060 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 358-57 chr10 112331267 112331454 + 2 NA intron (NR_028134, intron 10 of 18) MER41E|LTR|ERV1 25235 NR_028134 390003 Hs.534691 NR_028134 ENSG00000243316 GUCY2GP GUCY2G guanylate cyclase 2G, pseudogene pseudo 516-29 chr11 21287155 21287511 + 2 NA intron (NM_201551, intron 14 of 18) L2c|LINE|L2 617747 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 309-113 chr12 85656992 85657228 + 2 NA Intergenic Intergenic 179299 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 196-156 chr21 22918334 22918516 + 2 NA Intergenic MamRep38|DNA|hAT -160859 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 305-569 chrX 15995926 15996202 + 2 NA Intergenic Intergenic -127501 NM_005314 2925 Hs.567282 NM_005314 ENSG00000126010 GRPR BB2|BB2R gastrin releasing peptide receptor protein-coding 197-88 chr2 19569474 19569664 + 2 NA Intergenic Intergenic -210946 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 501-23 chr10 57908643 57908997 + 2 NA Intergenic Intergenic 359074 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 229-332 chr6 48557141 48557264 + 2 NA Intergenic L1MC3|LINE|L1 -488513 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 396-315 chr6 76286583 76286951 + 2 NA Intergenic L1MA4|LINE|L1 -214089 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 357-349 chr5 85630803 85631069 + 2 NA Intergenic Intergenic -651508 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 264-211 chr2 125072397 125072559 + 2 NA Intergenic L1MB7|LINE|L1 1045507 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 289-332 chr4 39246112 39246349 + 2 NA intron (NM_025132, intron 24 of 36) AluJr4|SINE|Alu 63701 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 224-282 chr6 90637651 90637821 + 2 NA Intergenic L1MC4a|LINE|L1 -50664 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 280-373 chr7 11858983 11859171 + 2 NA Intergenic Intergenic -26879 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 350-130 chr14 49022473 49022713 + 2 NA Intergenic Intergenic 563787 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 325-364 chr3 153742796 153743043 + 2 NA intron (NR_146713, intron 1 of 6) intron (NR_146713, intron 1 of 6) 19607 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 479-132 chr3 23679217 23679555 + 2 NA Intergenic Intergenic -126569 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 219-216 chr21 23718276 23718440 + 2 NA Intergenic Intergenic -333523 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 335-193 chr17 14389041 14389271 + 2 NA Intergenic L1MB4|LINE|L1 85416 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 359-206 chr19 28748657 28748999 + 2 NA Intergenic Intergenic -21134 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 276-80 chr11 56018102 56018366 + 2 NA Intergenic Intergenic -12185 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 324-390 chr4 61165675 61165851 + 2 NA Intergenic MIRb|SINE|MIR 22107 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 264-87 chr12 12216872 12217093 + 2 NA intron (NM_002336, intron 2 of 22).2 intron (NM_002336, intron 2 of 22).2 50062 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 329-68 chr10 86048621 86048901 + 2 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 216027 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 333-284 chr2 204282463 204282779 + 2 NA Intergenic Intergenic -262854 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 267-56 chr10 96112071 96112247 + 2 NA Intergenic L1MEg|LINE|L1 -17556 NM_001278526 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 323-479 chr6 167544850 167545064 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -72167 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 367-150 chr16 53319958 53320295 + 2 NA intron (NM_001352157, intron 36 of 37) AluJr|SINE|Alu 51086 NM_001347693 643802 Hs.451336 NM_001207030 LOC643802 - u3 small nucleolar ribonucleoprotein protein MPP10-like protein-coding 268-236 chr3 8457908 8458068 + 2 NA intron (NR_033378, intron 3 of 3) MLT1K|LTR|ERVL-MaLR 43670 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 304-93 chr11 116069030 116069271 + 2 NA Intergenic L2b|LINE|L2 -308950 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 388-221 chr3 31058282 31058658 + 2 NA Intergenic L1MD2|LINE|L1 103317 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 241-325 chr6 39993230 39993385 + 2 NA Intergenic HERV1_LTRe|LTR|ERV1 -58845 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 220-175 chr2 107278436 107278649 + 2 NA intron (NR_049853, intron 2 of 3) MIRc|SINE|MIR 70983 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 331-562 chr9 137135117 137135349 + 2 NA Intergenic L1M4|LINE|L1 -3921 NM_000832 2902 Hs.558334 NM_000832 ENSG00000176884 GRIN1 GluN1|MRD8|NDHMSD|NDHMSR|NMD-R1|NMDA1|NMDAR1|NR1 glutamate ionotropic receptor NMDA type subunit 1 protein-coding 240-56 chr10 64095952 64096144 + 2 NA Intergenic Intergenic -574158 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 280-321 chr5 42683655 42683834 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) -73074 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 379-265 chr5 67448143 67448423 + 2 NA Intergenic L1M2a|LINE|L1 198506 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 190-63 chr15 47684693 47684806 + 2 NA intron (NM_001198999, intron 4 of 19) intron (NM_001198999, intron 4 of 19) -32756 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 435-47 chr11 23924715 23925063 + 2 NA Intergenic Intergenic -505699 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 221-111 chr17 60557980 60558099 + 2 NA Intergenic LTR18B|LTR|ERVL -6507 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 477-274 chr8 62398503 62398792 + 2 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 149793 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 203-59 chr14 49855825 49856020 + 2 NA Intergenic L1MA9|LINE|L1 -2008 NR_145670 378707 NR_145670 ENSG00000278771 RN7SL3 7L30.2|RN7SL631P|RNSRP3 RNA component of signal recognition particle 7SL3 scRNA 462-215 chr4 148524921 148525359 + 2 NA Intergenic Intergenic -80442 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 566-13 chr10 61935489 61935905 + 2 NA intron (NM_032199, intron 2 of 9) L1ME1|LINE|L1 33998 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 447-111 chr19 37582056 37582397 + 2 NA intron (NR_038250, intron 2 of 2) L2b|LINE|L2 12520 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 249-144 chr16 76831582 76831817 + 2 NA Intergenic MIR|SINE|MIR -37237 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 344-151 chr15 36825345 36825641 + 2 NA Intergenic Intergenic -6987 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 230-237 chr3 109642319 109642489 + 2 NA Intergenic AluJb|SINE|Alu 39576 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 212-115 chr16 51636759 51636922 + 2 NA Intergenic Intergenic -125679 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 319-179 chr16 76759134 76759352 + 2 NA Intergenic L1MC|LINE|L1 -109693 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 317-368 chr4 184222452 184222727 + 2 NA Intergenic L1MB2|LINE|L1 -4716 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 285-71 chr11 102355798 102356030 + 2 NA intron (NM_001256163, intron 3 of 8) L1MA9|LINE|L1 8540 NM_001256163 329 Hs.696238 NM_001166 ENSG00000110330 BIRC2 API1|HIAP2|Hiap-2|MIHB|RNF48|c-IAP1|cIAP1 baculoviral IAP repeat containing 2 protein-coding 182-15 chr1 213781735 213781913 + 2 NA Intergenic Intergenic -142925 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 301-333 chr4 125231397 125231645 + 2 NA Intergenic L1MEg|LINE|L1 -84891 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 377-201 chr2 65454418 65454747 + 2 NA Intergenic L1MC4|LINE|L1 -21983 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 301-75 chr11 88757741 88757991 + 2 NA intron (NM_001143831, intron 2 of 8) L1PREC2|LINE|L1 253290 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 314-545 chr7 111881463 111881697 + 2 NA intron (NM_001363540, intron 16 of 52) L1MA2|LINE|L1 73075 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 346-156 chr15 53032337 53032662 + 2 NA Intergenic Intergenic -83866 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 506-44 chr10 107348654 107349003 + 2 NA Intergenic Intergenic -184122 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 266-189 chr2 112792086 112792250 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -6770 NM_000575 3552 Hs.1722 NM_000575 ENSG00000115008 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1 alpha protein-coding 308-356 chr4 114859406 114859675 + 2 NA intron (NM_022569, intron 7 of 13) LTR16A1|LTR|ERVL 202781 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 229-149 chr17 66916948 66917165 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -47651 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 302-440 chr8 51931727 51931938 + 2 NA Intergenic Intergenic -32646 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 261-169 chr19 53422062 53422258 + 2 NA intron (NR_146721, intron 3 of 7) intron (NR_146721, intron 3 of 7) -9814 NR_003148 147804 Hs.433293 NM_001010856 ENSG00000241015 TPM3P9 - tropomyosin 3 pseudogene 9 pseudo 286-460 chr8 107377238 107377483 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -40845 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 214-354 chr9 106454929 106455045 + 2 NA Intergenic L1ME3A|LINE|L1 -145941 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 340-323 chr20 52604442 52604773 + 2 NA Intergenic Intergenic -16231 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 244-286 chr5 15429043 15429273 + 2 NA Intergenic L1MD1|LINE|L1 -71022 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 267-221 chr2 225871574 225871783 + 2 NA Intergenic L1MD2|LINE|L1 -271116 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 581-17 chr10 66518341 66518698 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -407517 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 297-181 chr18 5483008 5483185 + 2 NA intron (NM_001281535, intron 4 of 21) L1MA4|LINE|L1 57460 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 302-240 chr2 186040353 186040554 + 2 NA intron (NR_110218, intron 3 of 5) L1MA5A|LINE|L1 45864 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 368-82 chr11 82296478 82296833 + 2 NA intron (NR_120571, intron 3 of 7) L1MA7|LINE|L1 107258 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 384-86 chr12 77259126 77259333 + 2 NA Intergenic L2a|LINE|L2 -193660 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 320-284 chr2 146703684 146703973 + 2 NA Intergenic L1MA1|LINE|L1 116771 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 193-117 chr2 143658780 143658925 + 2 NA intron (NM_018460, intron 12 of 13) MLT1D|LTR|ERVL-MaLR -278215 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 321-254 chr18 64369945 64370209 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -110022 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 304-76 chr11 38871387 38871648 + 2 NA Intergenic Intergenic 222659 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 290-156 chr16 47669929 47670178 + 2 NA intron (NM_001031835, intron 27 of 31) MIRb|SINE|MIR -188528 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 220-334 chr7 7204263 7204417 + 2 NA intron (NM_020156, intron 1 of 3) L1MB3|LINE|L1 21725 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 653-6 chr1 116284544 116285023 + 2 NA Intergenic Intergenic -88461 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 198-248 chr8 118683422 118683542 + 2 NA intron (NR_038210, intron 3 of 4) L1MC|LINE|L1 -61519 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 460-69 chr12 82594776 82595181 + 2 NA Intergenic Intergenic -91928 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 134-83 chr7 51139133 51139235 + 2 NA intron (NM_015198, intron 5 of 12) MIRb|SINE|MIR 177625 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 309-432 chr5 32645735 32645960 + 2 NA Intergenic MIR|SINE|MIR -45025 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 322-314 chr22 41146005 41146289 + 2 NA intron (NM_001362843, intron 10 of 29) intron (NM_001362843, intron 10 of 29) 51354 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 382-45 chr10 89528603 89528925 + 2 NA intron (NM_213606, intron 2 of 7) MER5B|DNA|hAT-Charlie 6830 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 348-107 chr12 30783265 30783599 + 2 NA Intergenic MIR|SINE|MIR -12249 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 322-281 chr2 202752149 202752375 + 2 NA intron (NM_173511, intron 4 of 7) MIRb|SINE|MIR 76972 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 230-107 chr14 43007972 43008137 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 1401198 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 592-165 chr7 125953035 125953588 + 2 NA Intergenic L1PA16|LINE|L1 -689020 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 294-143 chr15 81975030 81975268 + 2 NA Intergenic L1M6|LINE|L1 70869 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 235-199 chr20 33224044 33224223 + 2 NA intron (NM_001042439, intron 2 of 5) intron (NM_001042439, intron 2 of 5) 6781 NM_178466 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 313-490 chr7 33915096 33915321 + 2 NA intron (NM_133468, intron 3 of 15) intron (NM_133468, intron 3 of 15) 9669 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 423-11 chr1 100111477 100111887 + 2 NA intron (NM_001304829, intron 6 of 15) intron (NM_001304829, intron 6 of 15) 21248 NM_001304829 163786 Hs.591447 NM_194292 ENSG00000156876 SASS6 MCPH14|SAS-6|SAS6 SAS-6 centriolar assembly protein protein-coding 327-394 chr5 44794796 44795013 + 2 NA intron (NR_109863, intron 1 of 3) MER34C_|LTR|ERV1 13889 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 396-282 chr5 62705076 62705447 + 2 NA Intergenic Intergenic 126442 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 423-28 chr10 78268945 78269234 + 2 NA intron (NR_073447, intron 1 of 2) intron (NR_073447, intron 1 of 2) 1747 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 281-59 chr11 16079445 16079699 + 2 NA intron (NM_017508, intron 8 of 14) A-rich|Low_complexity|Low_complexity -109951 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 232-132 chr17 50338688 50338869 + 2 NA Intergenic L1MEi|LINE|L1 -7348 NR_110010 64132 Hs.463416 NM_022167 ENSG00000015532 XYLT2 PXYLT2|SOS|XT-II|XT2|xylT-II xylosyltransferase 2 protein-coding 391-247 chr3 187667608 187667952 + 2 NA Intergenic Intergenic 2614 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 320-342 chr3 39628915 39629216 + 2 NA Intergenic AluSg4|SINE|Alu 126999 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 378-148 chr15 58024673 58024904 + 2 NA intron (NM_170696, intron 1 of 11) L1MA4A|LINE|L1 -10765 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 212-72 chr11 114845351 114845549 + 2 NA Intergenic Intergenic 166923 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 405-153 chr2 123033618 123033997 + 2 NA Intergenic L1PREC2|LINE|L1 39674 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 134-72 chr5 143840560 143840655 + 2 NA Intergenic Intergenic 28446 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 453-228 chr6 69173574 69173955 + 2 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 538482 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 313-446 chr5 130781556 130781823 + 2 NA Intergenic Intergenic 383567 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 303-231 chr2 175498685 175498911 + 2 NA Intergenic L1MA2|LINE|L1 -317088 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 325-377 chr4 13791858 13792020 + 2 NA intron (NR_121681, intron 2 of 3) L1MEf|LINE|L1 136760 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 348-505 chr7 132620428 132620626 + 2 NA intron (NM_181775, intron 2 of 4) L1ME3G|LINE|L1 28161 NM_181775 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 353-67 chr10 90138405 90138594 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -181126 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 313-82 chr11 63321032 63321225 + 2 NA Intergenic L1PA8|LINE|L1 31225 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 189-9 chr1 208321837 208321984 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -77526 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 189-63 chr16 10402270 10402368 + 2 NA intron (NM_024997, intron 1 of 11) L1M2|LINE|L1 16258 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 491-179 chr4 14449760 14450110 + 2 NA Intergenic Intergenic 337967 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 219-197 chr20 12168224 12168371 + 2 NA Intergenic L1PA14|LINE|L1 250404 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 387-357 chr8 50098397 50098696 + 2 NA intron (NR_135798, intron 1 of 15) MER2|DNA|TcMar-Tigger -65585 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 376-129 chr16 26030520 26030731 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 5388 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 393-100 chr14 63264815 63265067 + 2 NA intron (NM_020663, intron 1 of 4) L1PA16|LINE|L1 53994 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 499-83 chr17 13536185 13536653 + 2 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) 7227 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 266-312 chr5 16579318 16579534 + 2 NA intron (NM_001034850, intron 1 of 8) intron (NM_001034850, intron 1 of 8) -36500 NR_109946 101929524 Hs.734029 NR_109946 ENSG00000246214 LOC101929524 - uncharacterized LOC101929524 ncRNA 318-239 chr19 44319753 44320004 + 2 NA Intergenic L1MA4|LINE|L1 -14853 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 192-150 chr4 98692838 98692990 + 2 NA Intergenic Intergenic 34012 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 584-140 chr5 105781586 105782031 + 2 NA Intergenic Intergenic 682334 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 339-151 chr14 47783764 47784019 + 2 NA intron (NR_039996, intron 2 of 2) intron (NR_039996, intron 2 of 2) 11123 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 302-279 chr3 22902117 22902312 + 2 NA Intergenic L1M5|LINE|L1 300364 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 356-511 chr9 128386391 128386645 + 2 NA intron (NM_030914, intron 2 of 4) intron (NM_030914, intron 2 of 4) -6103 NR_039815 100616335 NR_039815 ENSG00000283335 MIR219B MIR2964A|hsa-mir-219b|mir-219b microRNA 219b ncRNA 562-105 chr2 68350994 68351416 + 2 NA Intergenic Intergenic -14077 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 371-419 chr9 110995804 110996025 + 2 NA intron (NM_001351397, intron 1 of 4) intron (NM_001351397, intron 1 of 4) 40866 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 310-538 chr8 127154306 127154564 + 2 NA Intergenic Intergenic 43192 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 269-401 chr8 76263118 76263326 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -143432 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 149-86 chr5 122361859 122361984 + 2 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) -29168 NM_001308108 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 334-565 chr9 38129151 38129396 + 2 NA Intergenic (GTG)n|Simple_repeat|Simple_repeat -60046 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 499-125 chr2 103735161 103735473 + 2 NA Intergenic L1MA4A|LINE|L1 673015 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 342-481 chr7 31393375 31393609 + 2 NA Intergenic MER65A|LTR|ERV1 -52766 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 774-54 chr21 42332406 42332981 + 2 NA Intergenic Intergenic -17097 NM_003226 7033 Hs.82961 NM_003226 ENSG00000160180 TFF3 ITF|P1B|TFI trefoil factor 3 protein-coding 197-102 chr2 127673918 127674066 + 2 NA intron (NM_001136037, intron 1 of 10) intron (NM_001136037, intron 1 of 10) 1538 NM_001161403 55679 Hs.469881 NM_017980 ENSG00000072163 LIMS2 LGMD2W|MDRCMTT|PINCH-2|PINCH2 LIM zinc finger domain containing 2 protein-coding 417-10 chr1 107827238 107827592 + 2 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -69808 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 364-125 chr14 45358651 45358975 + 2 NA Intergenic MER39|LTR|ERV1 -105611 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 362-376 chr6 54032856 54033150 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) 14033 NM_001281746 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 361-191 chr18 78287957 78288303 + 2 NA Intergenic AluSg|SINE|Alu -294403 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 1361-6 chr20 40344306 40345311 + 2 NA Intergenic L1MA9|LINE|L1 340347 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 290-371 chr5 156961455 156961665 + 2 NA intron (NM_138379, intron 1 of 8) AluSx1|SINE|Alu 1666 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 665-40 chr16 62919685 62920184 + 2 NA Intergenic Intergenic -883496 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 500-324 chrX 36270255 36270677 + 2 NA intron (NM_001304548, intron 49 of 63) L1ME1|LINE|L1 169826 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 164-61 chr2 226227386 226227523 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 84660 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 319-152 chr14 87264032 87264264 + 2 NA Intergenic Intergenic 358370 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 390-429 chr9 132693642 132693876 + 2 NA non-coding (NR_133925, exon 6 of 6) non-coding (NR_133925, exon 6 of 6) 23295 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 197-18 chr1 246517617 246517761 + 2 NA intron (NR_040002, intron 2 of 2) intron (NR_040002, intron 2 of 2) 6598 NR_040002 255654 Hs.407570 NR_040002 ENSG00000242042 LINC01743 - long intergenic non-protein coding RNA 1743 ncRNA 493-41 chr11 29363374 29363807 + 2 NA Intergenic Intergenic -230823 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 269-83 chr12 23159015 23159231 + 2 NA Intergenic L1M5|LINE|L1 -16513 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 252-457 chrX 58319466 58319643 + 2 NA Intergenic ALR/Alpha|Satellite|centr -408921 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 411-145 chr2 59578453 59578682 + 2 NA Intergenic Intergenic 360859 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 231-316 chr6 146974489 146974662 + 2 NA intron (NR_034115, intron 6 of 10) intron (NR_034115, intron 6 of 10) -170751 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 273-255 chr20 14009422 14009605 + 2 NA intron (NM_001351663, intron 2 of 17) L1PA11|LINE|L1 13997 NM_001351661 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 840-7 chr10 66653007 66653504 + 2 NA intron (NM_001127384, intron 9 of 17) L1MA8|LINE|L1 -272781 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 224-10 chr1 67626667 67626856 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -58440 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 514-285 chr8 104981992 104982497 + 2 NA Intergenic Intergenic -336194 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 239-7 chr1 71393261 71393448 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 312030 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 310-255 chr2 123012770 123012978 + 2 NA Intergenic L1M4c|LINE|L1 60607 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 678-6 chr10 18010372 18010790 + 2 NA promoter-TSS (NR_038419) promoter-TSS (NR_038419) -19 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 492-152 chr20 39160801 39161112 + 2 NA Intergenic L1M3|LINE|L1 63792 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 143-62 chr4 63202497 63202598 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -1040782 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 323-393 chr5 16086592 16086910 + 2 NA intron (NM_001102562, intron 3 of 3) intron (NM_001102562, intron 3 of 3) 93040 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 272-331 chr5 23239364 23239615 + 2 NA Intergenic Intergenic -268120 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 211-97 chr15 66801246 66801372 + 2 NA Intergenic Intergenic 99073 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 313-242 chr2 37423492 37423676 + 2 NA Intergenic LOR1b|LTR|ERV1 78954 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 256-342 chr5 152843585 152843776 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 128669 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 349-124 chr12 34505726 34505955 + 2 NA Intergenic ALR/Alpha|Satellite|centr 483344 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 415-168 chr22 36972565 36972936 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 7502 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 286-183 chr19 57522133 57522298 + 2 NA Intergenic L1MD|LINE|L1 -5110 NM_153263 256051 Hs.744289 NM_153263 ENSG00000121406 ZNF549 - zinc finger protein 549 protein-coding 666-75 chr3 50998616 50999060 + 2 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) 323758 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 253-395 chr7 111081682 111081872 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -9229 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 332-316 chr3 24308765 24308992 + 2 NA intron (NM_001354710, intron 2 of 10) intron (NM_001354710, intron 2 of 10) 157554 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 315-10 chr1 78385546 78385711 + 2 NA Intergenic L1MB7|LINE|L1 -105346 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 532-211 chr5 150879039 150879418 + 2 NA intron (NM_001346557, intron 2 of 3) intron (NM_001346557, intron 2 of 3) 25755 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 304-183 chr16 55232720 55232896 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger -91751 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 248-57 chr10 126311801 126312039 + 2 NA intron (NM_001288974, intron 2 of 18) MER21C|LTR|ERVL 76557 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 347-129 chr14 54093316 54093613 + 2 NA Intergenic L1MB8|LINE|L1 -136573 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 318 chr1 8746462 8746768 + 2 NA intron (NM_001042681, intron 1 of 22) MER47A|DNA|TcMar-Tigger 71025 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 175-83 chr2 141111196 141111350 + 2 NA intron (NM_018557, intron 7 of 90) intron (NM_018557, intron 7 of 90) -524588 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 197-222 chr8 141832739 141832909 + 2 NA Intergenic L1ME2|LINE|L1 -46511 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 202-134 chr2 213506981 213507155 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 222604 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 345-209 chr18 1129757 1130011 + 2 NA Intergenic L1MB7|LINE|L1 -201891 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 390-312 chr5 178685219 178685543 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 45278 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 240-401 chr7 89073604 89073837 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -277983 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 401-278 chr6 33914199 33914536 + 2 NA Intergenic Intergenic 15232 NR_106982 102466816 NR_106982 ENSG00000276824 MIR7159 hsa-mir-7159 microRNA 7159 ncRNA 409-89 chr15 36189724 36190066 + 2 NA Intergenic L1ME3A|LINE|L1 263039 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 216-131 chr17 29642662 29642817 + 2 NA intron (NM_033389, intron 13 of 14) intron (NM_033389, intron 13 of 14) -21316 NM_032854 84940 Hs.143046 NM_032854 ENSG00000167549 CORO6 - coronin 6 protein-coding 196-229 chr6 126949558 126949667 + 2 NA Intergenic Intergenic -169059 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 307-61 chr10 64794787 64795076 + 2 NA Intergenic L1MC3|LINE|L1 -30597 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 265-325 chr5 150980260 150980450 + 2 NA Intergenic Intergenic -33771 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 268-195 chr2 71902932 71903097 + 2 NA Intergenic L1M5|LINE|L1 244848 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 348-311 chr3 103519380 103519575 + 2 NA Intergenic L1PA16|LINE|L1 4639 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 261-176 chr2 33991960 33992182 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -75155 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 335-239 chr2 43106332 43106502 + 2 NA Intergenic MIR3|SINE|MIR -3972 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 264-291 chr4 68089427 68089667 + 2 NA intron (NM_207407, intron 3 of 9) intron (NM_207407, intron 3 of 9) -26250 NR_027094 401135 Hs.130270 NM_001014372 SYT14P1 CHR415SYT|SYT14L|SYTDEP synaptotagmin 14 pseudogene 1 pseudo 249-211 chr2 121872777 121873016 + 2 NA Intergenic Intergenic 117245 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 307-245 chr2 103142099 103142365 + 2 NA Intergenic MER89|LTR|ERV1 -157803 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 247-274 chr3 148774575 148774814 + 2 NA Intergenic Intergenic 44514 NM_032049 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 330-177 chr15 93399768 93399977 + 2 NA Intergenic L1MD2|LINE|L1 193806 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 295-23 chr1 172401765 172401982 + 2 NA intron (NM_001350206, intron 20 of 20) intron (NM_001350206, intron 20 of 20) -18812 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 388-112 chr14 69566903 69567157 + 2 NA Intergenic Intergenic 7841 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 338-117 chr11 127883497 127883679 + 2 NA Intergenic LTR33|LTR|ERVL -325178 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 464-101 chr18 76115862 76116203 + 2 NA Intergenic L1MC4|LINE|L1 -6966 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 852-48 chr8 117080382 117080984 + 2 NA intron (NM_001172815, intron 2 of 10) L1PA16|LINE|L1 -54312 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 248-146 chr16 87531211 87531408 + 2 NA Intergenic Intergenic 37122 NR_110943 101928737 Hs.579009 NR_110943 ENSG00000260750 LOC101928737 - uncharacterized LOC101928737 ncRNA 407-163 chr2 229871322 229871641 + 2 NA intron (NM_001348330, intron 2 of 41) MSTB|LTR|ERVL-MaLR 50198 NM_001348334 9320 Hs.572642 NM_004238 ENSG00000153827 TRIP12 MRD49|TRIP-12|ULF thyroid hormone receptor interactor 12 protein-coding 286-92 chr12 59311593 59311823 + 2 NA Intergenic L1PA16|LINE|L1 -284321 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 211-44 chr10 118280720 118280912 + 2 NA Intergenic Intergenic 61508 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 235-377 chr8 131856202 131856362 + 2 NA Intergenic LTR85b|LTR|Gypsy? -47811 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 287-124 chr13 70921360 70921548 + 2 NA Intergenic Intergenic -93687 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 281-172 chr18 11745262 11745431 + 2 NA intron (NM_182978, intron 1 of 11) intron (NM_182978, intron 1 of 11) -6126 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 328-295 chr2 200574836 200575067 + 2 NA intron (NM_001160033, intron 7 of 8) intron (NM_001160033, intron 7 of 8) -11063 NM_001159 316 Hs.406238 NM_001159 ENSG00000138356 AOX1 AO|AOH1 aldehyde oxidase 1 protein-coding 415-300 chr9 25419348 25419702 + 2 NA Intergenic L2c|LINE|L2 259333 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 424-47 chr11 87331621 87331965 + 2 NA Intergenic AluY|SINE|Alu 293859 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 461-37 chr10 88077580 88077993 + 2 NA Intergenic Intergenic 214161 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 128-23 chr17 40397170 40397270 + 2 NA intron (NM_001067, intron 27 of 34) intron (NM_001067, intron 27 of 34) 20676 NM_001067 7153 Hs.156346 NM_001067 ENSG00000131747 TOP2A TOP2|TP2A DNA topoisomerase II alpha protein-coding 415-7 chr1 72505825 72506193 + 2 NA Intergenic L2|LINE|L2 -223470 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 243-66 chr11 28893803 28893978 + 2 NA Intergenic Intergenic -416342 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 378-458 chr9 100315976 100316276 + 2 NA intron (NM_001161584, intron 11 of 14) L1PB4|LINE|L1 36445 NM_001161584 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 324-328 chr21 46626952 46627248 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -8495 NM_001286678 3275 Hs.154163 NM_001535 ENSG00000160310 PRMT2 HRMT1L1 protein arginine methyltransferase 2 protein-coding 297-474 chr8 90757890 90758157 + 2 NA Intergenic MIRc|SINE|MIR -33752 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 334-50 chr10 39022957 39023241 + 2 NA Intergenic ALR/Alpha|Satellite|centr 326503 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 342-248 chr2 124017414 124017620 + 2 NA intron (NR_147976, intron 1 of 2) intron (NR_147976, intron 1 of 2) 7657 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 487-190 chr3 110643476 110643882 + 2 NA Intergenic Intergenic 426280 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 642-21 chr11 121171326 121171961 + 2 NA intron (NM_005422, intron 19 of 22) L1MA4A|LINE|L1 68977 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 269-93 chr12 77522890 77523143 + 2 NA Intergenic Intergenic -307878 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 290-67 chr11 6131446 6131614 + 2 NA Intergenic AluSx1|SINE|Alu 23846 NM_001005181 196335 Hs.632154 NM_001005181 ENSG00000180919 OR56B4 OR11-67 olfactory receptor family 56 subfamily B member 4 protein-coding 530-97 chr17 52288150 52288635 + 2 NA Intergenic Intergenic -102130 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 344-488 chr8 65008030 65008241 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 172205 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 456-347 chr9 118359772 118360189 + 2 NA Intergenic Intergenic -319691 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 196-119 chr2 34985130 34985256 + 2 NA Intergenic (ATATT)n|Simple_repeat|Simple_repeat 307636 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 528-190 chr4 170939049 170939420 + 2 NA Intergenic Intergenic -101368 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 331-553 chr9 36699907 36700072 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 123610 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 350-265 chr20 3495874 3496222 + 2 NA intron (NM_001323332, intron 1 of 25) L1MC5|LINE|L1 25030 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 221-69 chr13 51840897 51841085 + 2 NA intron (NM_001351006, intron 1 of 2) intron (NM_001351006, intron 1 of 2) 4186 NM_001351006 283521 Hs.649896 NM_178515 ENSG00000281106 TMEM272 LINC00282|NCRNA00282 transmembrane protein 272 protein-coding 295-500 chr9 90255667 90255886 + 2 NA Intergenic Intergenic 177713 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 420-110 chr18 24699780 24700097 + 2 NA Intergenic Intergenic -25843 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 413-15 chr1 115686559 115686895 + 2 NA intron (NM_001172411, intron 7 of 7) intron (NM_001172411, intron 7 of 7) 44098 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 224-158 chr2 153846243 153846402 + 2 NA Intergenic L1MEg|LINE|L1 -25600 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 384-320 chr6 104428792 104429081 + 2 NA Intergenic Intergenic 430610 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 256-296 chr4 109645132 109645381 + 2 NA intron (NM_017918, intron 1 of 7) L2|LINE|L2 58189 NM_032992 839 Hs.654616 NM_001226 ENSG00000138794 CASP6 MCH2 caspase 6 protein-coding 457-18 chr1 180098874 180099282 + 2 NA intron (NM_014810, intron 37 of 37) intron (NM_014810, intron 37 of 37) -55755 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 217-343 chr7 14624030 14624218 + 2 NA intron (NM_001350717, intron 13 of 24) intron (NM_001350717, intron 13 of 24) 217326 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 299-390 chr6 13519034 13519314 + 2 NA Intergenic L1MC5a|LINE|L1 -31537 NM_001242629 54438 Hs.484686 NM_018988 ENSG00000145990 GFOD1 ADG-90|C6orf114 glucose-fructose oxidoreductase domain containing 1 protein-coding 672-36 chr16 49715405 49715924 + 2 NA intron (NM_001271620, intron 3 of 7) AluJr|SINE|Alu -51340 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 234-410 chrX 154721250 154721465 + 2 NA intron (NR_104114, intron 1 of 8) MSTD|LTR|ERVL-MaLR 29720 NM_001081573 139716 Hs.496982 NM_080612 ENSG00000160219 GAB3 - GRB2 associated binding protein 3 protein-coding 202-152 chr22 40454986 40455171 + 2 NA intron (NM_020831, intron 4 of 14) AluJb|SINE|Alu 8362 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 735-12 chr12 10642644 10643124 + 2 NA intron (NM_018423, intron 1 of 10) intron (NM_018423, intron 1 of 10) -29275 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 181-16 chr10 61331974 61332142 + 2 NA Intergenic L2a|LINE|L2 -120581 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 700-37 chr17 75357155 75357838 + 2 NA intron (NM_002086, intron 2 of 5) L1MC3|LINE|L1 48182 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 245-132 chr14 81078610 81078758 + 2 NA intron (NM_001142626, intron 3 of 8) MLT1H1|LTR|ERVL-MaLR 123063 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 362-175 chr16 6905947 6906155 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 132242 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 334-202 chr17 11011699 11011924 + 2 NA Intergenic L2a|LINE|L2 -173724 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 235-372 chr8 124171006 124171210 + 2 NA intron (NR_103547, intron 1 of 4) MER2|DNA|TcMar-Tigger 414 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 314-542 chr7 79577973 79578222 + 2 NA Intergenic Intergenic 124137 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 593 chr1 36273168 36273708 + 2 NA intron (NM_001321471, intron 3 of 12) L1M4|LINE|L1 -32930 NM_001162530 79729 Hs.524496 NM_024676 ENSG00000214193 SH3D21 C1orf113 SH3 domain containing 21 protein-coding 442-187 chr3 62427090 62427443 + 2 NA intron (NM_003716, intron 28 of 29) intron (NM_003716, intron 28 of 29) -53716 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 437-132 chr2 69760765 69761146 + 2 NA intron (NM_001320700, intron 1 of 12) AluJo|SINE|Alu 18821 NM_001153 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 206-58 chr12 63238814 63238977 + 2 NA Intergenic L1M4|LINE|L1 -86085 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 309-74 chr11 24900328 24900581 + 2 NA intron (NM_001252010, intron 5 of 9) L1MEc|LINE|L1 403401 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 204-277 chr7 145789011 145789167 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -953036 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 295-8 chr1 59561382 59561658 + 2 NA intron (NM_001350794, intron 8 of 14) intron (NM_001350794, intron 8 of 14) 45890 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 323-160 chr15 27472804 27473027 + 2 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -311596 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 464-261 chr8 125953076 125953452 + 2 NA Intergenic MER92-int|LTR|ERV1 -2067 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 187-85 chr2 139724045 139724216 + 2 NA Intergenic LTR49-int|LTR|ERV1 826806 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 235-401 chr9 118286200 118286398 + 2 NA Intergenic L1MEj|LINE|L1 -393372 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 443-134 chr18 78900607 78900995 + 2 NA Intergenic Intergenic -79474 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 402-73 chr13 39148212 39148484 + 2 NA Intergenic L1PA17|LINE|L1 109892 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 453-207 chr5 76152447 76152814 + 2 NA intron (NM_014979, intron 2 of 12) intron (NM_014979, intron 2 of 12) 69247 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 264-382 chr7 21794964 21795207 + 2 NA intron (NM_001277115, intron 61 of 81) L1M3f|LINE|L1 150814 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 426-67 chr13 68015249 68015532 + 2 NA Intergenic Intergenic 643003 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 298-274 chr22 25667097 25667359 + 2 NA intron (NM_001362778, intron 4 of 19) intron (NM_001362778, intron 4 of 19) -74960 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 319-575 chr9 79477679 79477991 + 2 NA Intergenic Intergenic -93938 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 372-506 chr9 1663535 1663765 + 2 NA Intergenic MIR|SINE|MIR -351697 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 243-191 chr19 57976475 57976714 + 2 NA TTS (NM_001348022) TTS (NM_001348022) -2060 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 237-107 chr14 68641598 68641760 + 2 NA intron (NM_001321818, intron 10 of 10) L1MEj|LINE|L1 -12892 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 275-270 chr4 74434385 74434599 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 -10644 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 179-80 chr4 38338077 38338204 + 2 NA Intergenic L1M5|LINE|L1 -28774 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 170-20 chr10 43865186 43865318 + 2 NA intron (NR_038268, intron 2 of 4) L1MA9|LINE|L1 5841 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 349-246 chr2 31821333 31821610 + 2 NA Intergenic L1M1|LINE|L1 -17491 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 168-63 chr2 161544690 161544801 + 2 NA Intergenic L1ME3E|LINE|L1 -36843 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 364-101 chr12 15380425 15380686 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 58047 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 365-105 chr12 119005582 119005928 + 2 NA intron (NM_194286, intron 1 of 12) MIR|SINE|MIR 24214 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 218-330 chr8 100141633 100141772 + 2 NA exon (NM_001029860, exon 2 of 5) exon (NM_001029860, exon 2 of 5) 4115 NM_001029860 286151 Hs.339577 NM_001029860 ENSG00000156509 FBXO43 EMI2|ERP1|FBX43 F-box protein 43 protein-coding 323-32 chr1 208732799 208733093 + 2 NA intron (NR_146914, intron 3 of 3) intron (NR_146914, intron 3 of 3) 4258 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 345-458 chr6 38525984 38526263 + 2 NA intron (NM_001172418, intron 5 of 10) THE1D-int|LTR|ERVL-MaLR 44527 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 551-156 chr5 63793695 63794099 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 168395 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 608-37 chr14 28844871 28845368 + 2 NA Intergenic Intergenic -59332 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 606-117 chr4 70824168 70824555 + 2 NA exon (NM_002092, exon 9 of 10) exon (NM_002092, exon 9 of 10) 15142 NM_001098477 2926 Hs.309763 NM_002092 ENSG00000132463 GRSF1 - G-rich RNA sequence binding factor 1 protein-coding 163-79 chr3 37957880 37958036 + 2 NA intron (NM_001008392, intron 3 of 7) intron (NM_001008392, intron 3 of 7) -11446 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 389-377 chr8 141029057 141029258 + 2 NA Intergenic Intergenic -27078 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 179-37 chr18 61770078 61770223 + 2 NA Intergenic L1MEd|LINE|L1 21974 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 306-49 chr10 24035686 24035932 + 2 NA intron (NM_001098500, intron 2 of 18) L3b|LINE|CR1 -172982 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 667-52 chr2 133309596 133310209 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 43707 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 664-110 chr7 96434082 96434631 + 2 NA Intergenic L1MB5|LINE|L1 69167 NR_163949 408-136 chr17 32392923 32393173 + 2 NA Intergenic L1ME3F|LINE|L1 42910 NM_003457 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 284-13 chr1 96674359 96674629 + 2 NA Intergenic L1MA3|LINE|L1 -47111 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 357 chr1 18487779 18488055 + 2 NA Intergenic Intergenic 6987 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 570-147 chr4 79921071 79921601 + 2 NA intron (NM_001286781, intron 16 of 16) intron (NM_001286781, intron 16 of 16) 93865 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 321-261 chr19 21185405 21185593 + 2 NA 3' UTR (NM_133473, exon 5 of 5) 3' UTR (NM_133473, exon 5 of 5) 43459 NM_001319126 170959 Hs.156256 NM_133473 ENSG00000196705 ZNF431 - zinc finger protein 431 protein-coding 855-23 chr19 5516053 5516603 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy 51706 NR_027064 257000 Hs.515575 NM_153375 ENSG00000223573 TINCR LINC00036|NCRNA00036|PLAC2|onco-lncRNA-16 TINCR ubiquitin domain containing ncRNA 422-217 chr4 97118238 97118452 + 2 NA Intergenic L1PB1|LINE|L1 -248581 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 302-167 chr17 52557736 52557891 + 2 NA Intergenic Intergenic 167291 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 286-29 chr10 15382499 15382748 + 2 NA Intergenic Intergenic -11334 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 278-132 chr15 67520368 67520571 + 2 NA promoter-TSS (NM_001143936) promoter-TSS (NM_001143936) 504 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 236-235 chr3 108121247 108121465 + 2 NA Intergenic Intergenic -3708 NR_110030 101929623 Hs.570653 NR_110028 ENSG00000271856 LINC01215 - long intergenic non-protein coding RNA 1215 ncRNA 869-45 chr8 112841976 112842717 + 2 NA intron (NM_001363185, intron 9 of 66) intron (NM_001363185, intron 9 of 66) 198853 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 322-118 chr12 17239155 17239391 + 2 NA Intergenic MIRb|SINE|MIR 250526 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 395-117 chr16 10382523 10382766 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -3417 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 115-52 chr9 116619066 116619153 + 2 NA intron (NM_014010, intron 17 of 21) MIR3|SINE|MIR 68106 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 319-512 chr7 134803321 134803531 + 2 NA intron (NM_033157, intron 1 of 14) L1ME2|LINE|L1 23792 NM_004342 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 226-359 chr8 127016170 127016321 + 2 NA intron (NR_045262, intron 1 of 1) intron (NR_045262, intron 1 of 1) 3091 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 174-87 chr3 30556879 30557012 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 38077 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 414 chr1 30624022 30624343 + 2 NA Intergenic L1ME3A|LINE|L1 -94590 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 486-38 chr10 107983813 107984223 + 2 NA intron (NR_125760, intron 4 of 4) (TATA)n|Simple_repeat|Simple_repeat 85275 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 298-282 chr22 46259618 46259801 + 2 NA exon (NM_006071, exon 1 of 1) exon (NM_006071, exon 1 of 1) 3634 NM_006071 10343 Hs.241383 NM_006071 ENSG00000130943 PKDREJ - polycystin family receptor for egg jelly protein-coding 377-166 chr18 7650215 7650429 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 83006 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 548-151 chr3 108219877 108220278 + 2 NA intron (NM_018010, intron 1 of 10) MER5B|DNA|hAT-Charlie 2347 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 361-403 chr6 162208636 162208931 + 2 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -518349 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 127-65 chr5 18631685 18631780 + 2 NA Intergenic Intergenic 824458 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 442-4 chr1 45065162 45065555 + 2 NA intron (NM_020883, intron 2 of 13) intron (NM_020883, intron 2 of 13) 53104 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 293-145 chr16 75037921 75038107 + 2 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 38990 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 156-84 chr5 148018878 148018969 + 2 NA Intergenic L1ME3E|LINE|L1 -45049 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 391-127 chr16 58792261 58792472 + 2 NA Intergenic Intergenic -58050 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 478-37 chr11 2616341 2616665 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 83495 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 318-244 chr2 15658975 15659138 + 2 NA Intergenic L2b|LINE|L2 -31726 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 178-144 chr8 83346435 83346547 + 2 NA Intergenic Intergenic -57267 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 466-255 chr7 87607466 87607916 + 2 NA intron (NM_001348945, intron 2 of 31) AluJr|SINE|Alu -6807 NM_001348946 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 264-61 chr10 107564697 107564923 + 2 NA Intergenic L1MB8|LINE|L1 -400104 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 316-76 chr10 75315382 75315579 + 2 NA intron (NR_038226, intron 2 of 3) L1M1|LINE|L1 19097 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 166-123 chr9 94737002 94737132 + 2 NA intron (NM_001193331, intron 1 of 7) intron (NM_001193331, intron 1 of 7) 10368 NM_001193331 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 232-285 chr5 4443855 4444058 + 2 NA Intergenic Intergenic -329525 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 344-435 chr6 123651474 123651749 + 2 NA Intergenic L1ME3B|LINE|L1 -14518 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 520-52 chr11 55091276 55091634 + 2 NA Intergenic ALR/Alpha|Satellite|centr -170700 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 302-57 chr10 107709672 107709839 + 2 NA Intergenic Intergenic 359538 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 191-219 chr8 140341087 140341224 + 2 NA intron (NM_001160372, intron 9 of 22) L2c|LINE|L2 116589 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 193-116 chr2 137501388 137501576 + 2 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 426450 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 347-138 chr14 79762328 79762524 + 2 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) -448993 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 383-132 chr15 78171287 78171614 + 2 NA exon (NM_001199377, exon 14 of 14) exon (NM_001199377, exon 14 of 14) 22088 NM_005530 3419 Hs.591110 NM_005530 ENSG00000166411 IDH3A - isocitrate dehydrogenase (NAD(+)) 3 alpha protein-coding 356-376 chr5 4174974 4175175 + 2 NA Intergenic Intergenic 579242 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 299-62 chr10 88133575 88133764 + 2 NA Intergenic Intergenic 270044 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 283-286 chr3 32300405 32300647 + 2 NA intron (NM_001320308, intron 1 of 2) MER39|LTR|ERV1 61846 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 196-163 chr22 39121159 39121298 + 2 NA Intergenic MLT2A2|LTR|ERVL 23984 NM_181773 164668 Hs.440515 NM_181773 ENSG00000100298 APOBEC3H A3H|ARP-10|ARP10 apolipoprotein B mRNA editing enzyme catalytic subunit 3H protein-coding 577-73 chr16 71223979 71224322 + 2 NA intron (NM_001198543, intron 1 of 18) L1PB2|LINE|L1 6572 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 225-70 chr12 23495377 23495595 + 2 NA Intergenic Intergenic 89100 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 243-393 chr6 83003875 83004008 + 2 NA intron (NR_146807, intron 9 of 10) intron (NR_146807, intron 9 of 10) 61900 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 371-259 chr3 154058387 154058712 + 2 NA intron (NR_037901, intron 2 of 3) L2c|LINE|L2 -62454 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 287-342 chr6 8413906 8414108 + 2 NA intron (NM_001142540, intron 10 of 10) intron (NM_001142540, intron 10 of 10) 21538 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 223-278 chr5 60585569 60585782 + 2 NA Intergenic MamRep1879|DNA|hAT-Tip100? -89389 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 326-463 chr6 111234166 111234374 + 2 NA Intergenic L2a|LINE|L2 -25069 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 507-164 chr3 104322425 104322912 + 2 NA Intergenic L1PB1|LINE|L1 -798552 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 218-279 chr5 144929839 144930013 + 2 NA Intergenic L1MA9|LINE|L1 724535 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 354-122 chr13 84763770 84764054 + 2 NA Intergenic MIRb|SINE|MIR -19742 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 343-80 chr11 88473488 88473696 + 2 NA Intergenic Intergenic -30984 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 304-269 chr2 122102616 122102848 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 347081 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 505-13 chr1 147287374 147287760 + 2 NA intron (NM_001348462, intron 18 of 22) intron (NM_001348462, intron 18 of 22) 44425 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 338-120 chr12 20676745 20676931 + 2 NA intron (NM_000921, intron 15 of 15) L1MA4A|LINE|L1 -18517 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 174-141 chr7 127141683 127141799 + 2 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -73386 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 292-270 chr22 34605402 34605549 + 2 NA Intergenic Intergenic 392441 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 256-272 chr3 117227920 117228168 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 306613 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 638-164 chr8 135913968 135914311 + 2 NA Intergenic MIRb|SINE|MIR 456683 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 546-108 chr2 81832260 81832626 + 2 NA Intergenic L1MA7|LINE|L1 -365497 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 230-102 chr13 86046363 86046587 + 2 NA Intergenic Intergenic -247056 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 246-334 chr5 110846847 110846994 + 2 NA Intergenic L1ME2|LINE|L1 107913 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 230-174 chr2 84791870 84792014 + 2 NA intron (NM_001370, intron 68 of 76) intron (NM_001370, intron 68 of 76) 89142 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 331-336 chr22 49602840 49603038 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 54580 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 135-9 chr10 63233116 63233204 + 2 NA intron (NM_001322252, intron 2 of 24) intron (NM_001322252, intron 2 of 24) 36063 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 288-374 chr6 84953726 84953949 + 2 NA Intergenic Intergenic -189239 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 882-31 chr3 194796347 194796906 + 2 NA Intergenic L1MA4A|LINE|L1 -27917 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 222-247 chr3 143993151 143993311 + 2 NA TTS (NM_173552) TTS (NM_173552) 20150 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 205-172 chr22 28162275 28162454 + 2 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -241752 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 329-83 chr10 120974192 120974481 + 2 NA Intergenic LTR33|LTR|ERVL 122974 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 329-179 chr15 35732252 35732524 + 2 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) 186193 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 712-81 chr5 156724119 156724647 + 2 NA intron (NM_001128209, intron 6 of 7) AluY|SINE|Alu -125912 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 309-345 chr3 61028204 61028393 + 2 NA intron (NR_148922, intron 3 of 3) L2c|LINE|L2 223154 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 288-267 chr3 89468323 89468509 + 2 NA intron (NM_005233, intron 15 of 16) intron (NM_005233, intron 15 of 16) 360795 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 357-172 chr18 59670425 59670776 + 2 NA intron (NM_133459, intron 2 of 10) intron (NM_133459, intron 2 of 10) 26823 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 175-124 chr5 12424847 12424999 + 2 NA Intergenic MER31B|LTR|ERV1 -149934 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 388-19 chr1 177758363 177758597 + 2 NA Intergenic MIR|SINE|MIR 57956 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 250-156 chr17 11588265 11588441 + 2 NA Intergenic MER89|LTR|ERV1 -10117 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 291-340 chr5 28026716 28026872 + 2 NA Intergenic Intergenic 260871 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 278-308 chr4 52013665 52013887 + 2 NA intron (NM_001024611, intron 2 of 4) intron (NM_001024611, intron 2 of 4) 6587 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 347-358 chr4 123983704 123983890 + 2 NA Intergenic L3|LINE|CR1 209533 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 412-109 chr16 57699550 57699830 + 2 NA intron (NM_032269, intron 3 of 17) MIRb|SINE|MIR 4884 NM_001289163 84229 Hs.513635 NM_032269 ENSG00000159625 DRC7 C16orf50|CCDC135|CFAP50|FAP50 dynein regulatory complex subunit 7 protein-coding 731-51 chr4 21145418 21145919 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 158238 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 259-227 chr20 1480901 1481137 + 2 NA intron (NM_001122962, intron 1 of 4) intron (NM_001122962, intron 1 of 4) 10401 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 346-62 chr11 19978788 19979124 + 2 NA intron (NM_182964, intron 10 of 37) intron (NM_182964, intron 10 of 37) -43600 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 315-515 chr9 95639276 95639577 + 2 NA Intergenic L1ME4a|LINE|L1 -122369 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 677-78 chr7 87702372 87702921 + 2 NA intron (NM_001348945, intron 1 of 31) Charlie1a|DNA|hAT-Charlie 10677 NM_001348944 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 350-302 chr3 22363887 22364078 + 2 NA Intergenic L1ME3A|LINE|L1 406843 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 361-181 chr18 10109855 10110186 + 2 NA Intergenic L2|LINE|L2 196004 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 395-46 chr10 106460208 106460471 + 2 NA Intergenic L1PA17|LINE|L1 320174 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 294-337 chr4 74269443 74269730 + 2 NA intron (NR_147097, intron 8 of 9) (AATA)n|Simple_repeat|Simple_repeat -38884 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 128-18 chr14 41220864 41220954 + 2 NA Intergenic Intergenic 266198 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 247-377 chr7 33867451 33867668 + 2 NA Intergenic Intergenic -37356 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 693-25 chr13 50570065 50570484 + 2 NA Intergenic Mam_R4|LINE|Dong-R4 -42825 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 520-6 chr1 56052812 56053227 + 2 NA Intergenic L2c|LINE|L2 107932 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 287-402 chr8 82769939 82770205 + 2 NA Intergenic Intergenic -142032 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 333-243 chr2 74392586 74392877 + 2 NA promoter-TSS (NM_001190836) promoter-TSS (NM_001190836) -644 NM_001190836 1639 Hs.516111 NM_004082 ENSG00000204843 DCTN1 DAP-150|DP-150|P135 dynactin subunit 1 protein-coding 730-51 chr4 42750866 42751256 + 2 NA Intergenic Intergenic -93956 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 656-86 chr4 100442967 100443475 + 2 NA intron (NM_001159694, intron 4 of 10) L1MA9|LINE|L1 -47974 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 361-295 chr3 108430012 108430216 + 2 NA intron (NM_014981, intron 27 of 41) MARNA|DNA|TcMar-Mariner 99208 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 690-3 chr1 162409536 162409914 + 2 NA intron (NM_053282, intron 1 of 3) AluSx|SINE|Alu 2411 NM_053282 117157 Hs.350581 NM_053282 ENSG00000198574 SH2D1B EAT2 SH2 domain containing 1B protein-coding 441-12 chr1 186115646 186116060 + 2 NA intron (NM_031935, intron 75 of 106) intron (NM_031935, intron 75 of 106) -180420 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 297-138 chr14 66272723 66272942 + 2 NA Intergenic Intergenic -213539 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 321-290 chr2 106664963 106665133 + 2 NA Intergenic L1ME3B|LINE|L1 177684 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 381-388 chr8 114278367 114278641 + 2 NA Intergenic Intergenic -841565 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 400-130 chr17 55807517 55807814 + 2 NA intron (NM_001330378, intron 5 of 5) intron (NM_001330378, intron 5 of 5) 56560 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 198-228 chr7 38512495 38512654 + 2 NA intron (NM_001635, intron 2 of 20) intron (NM_001635, intron 2 of 20) 118799 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 331-48 chr10 44425068 44425329 + 2 NA Intergenic Intergenic -40101 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 330-148 chr14 36018886 36019134 + 2 NA Intergenic Intergenic -51417 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 444-275 chr8 137784091 137784433 + 2 NA Intergenic MIR|SINE|MIR 299283 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 162-13 chr10 18812154 18812241 + 2 NA Intergenic Intergenic 152766 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 346-329 chr3 139091293 139091584 + 2 NA Intergenic LTR40a|LTR|ERVL -12747 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 439-28 chr10 48963312 48963537 + 2 NA intron (NM_020945, intron 53 of 61) intron (NM_020945, intron 53 of 61) 22163 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 405-183 chr20 47058038 47058376 + 2 NA intron (NM_172110, intron 5 of 13) L1ME5|LINE|L1 -108760 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 933-32 chr5 57426943 57427615 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 55532 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 265-150 chr18 31412467 31412713 + 2 NA intron (NM_001134453, intron 14 of 14) intron (NM_001134453, intron 14 of 14) 14398 NR_110788 101927718 Hs.625473 NR_110788 ENSG00000266729 DSG1-AS1 - DSG1 antisense RNA 1 ncRNA 181-72 chr2 126904642 126904799 + 2 NA Intergenic L1MD|LINE|L1 5830 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 537-234 chr7 49249044 49249550 + 2 NA Intergenic L1M5|LINE|L1 324750 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 328-456 chr5 68356636 68356898 + 2 NA Intergenic Intergenic 64190 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 289-173 chr16 80594229 80594511 + 2 NA Intergenic L2a|LINE|L2 -21562 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 409-99 chr15 95063323 95063647 + 2 NA Intergenic L1MA6|LINE|L1 208122 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 382-192 chr2 61176482 61176774 + 2 NA promoter-TSS (NR_152211) promoter-TSS (NR_152211) -790 NR_152213 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 307-168 chr16 9272922 9273087 + 2 NA Intergenic Intergenic -82584 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 344-264 chr2 226452063 226452279 + 2 NA Intergenic L1ME1|LINE|L1 206622 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 436-121 chr19 37756478 37756905 + 2 NA intron (NM_001172690, intron 4 of 4) MER110-int|LTR|ERV1 22899 NM_001172692 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 375-11 chr1 82165523 82165861 + 2 NA Intergenic MLT2D|LTR|ERVL 363239 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 276-112 chr12 46386470 46386719 + 2 NA intron (NR_125381, intron 1 of 2) intron (NR_125381, intron 1 of 2) 2487 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 250-293 chr3 174469944 174470073 + 2 NA Intergenic Intergenic -389326 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 273-199 chr19 34525198 34525417 + 2 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat 20079 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 357-337 chr5 29988943 29989184 + 2 NA Intergenic Intergenic 108503 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 240-336 chr4 167908346 167908567 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -184081 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 302-192 chr2 1049248 1049545 + 2 NA intron (NM_018968, intron 1 of 16) L1MC1|LINE|L1 -98004 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 283-273 chr21 36798894 36799055 + 2 NA intron (NM_001352515, intron 6 of 10) L1ME1|LINE|L1 99859 NM_009586 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 SIM bHLH transcription factor 2 protein-coding 312-561 chrX 83339957 83340122 + 2 NA Intergenic Intergenic -168251 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 637-119 chr8 129146260 129146625 + 2 NA Intergenic Intergenic 94798 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 482-197 chr5 33323292 33323684 + 2 NA Intergenic Intergenic 93753 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 383-235 chr21 44607269 44607633 + 2 NA intron (NM_144991, intron 1 of 11) L1MA7|LINE|L1 -4628 NM_198695 386681 Hs.528021 NM_198695 ENSG00000187766 KRTAP10-8 KAP10.8|KRTAP18-8|KRTAP18.8 keratin associated protein 10-8 protein-coding 210-264 chr7 39605051 39605250 + 2 NA intron (NM_001282446, intron 2 of 2) L3|LINE|CR1 -18422 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 265-47 chr10 111794866 111795028 + 2 NA Intergenic L1MD2|LINE|L1 388818 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 311-373 chr4 47701258 47701478 + 2 NA intron (NM_006587, intron 5 of 21) intron (NM_006587, intron 5 of 21) 48699 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 608-95 chr3 8126637 8127064 + 2 NA Intergenic Intergenic -110543 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 216-150 chr18 73875108 73875288 + 2 NA Intergenic Intergenic 272636 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 254-77 chr12 26418079 26418255 + 2 NA intron (NM_002223, intron 50 of 56) intron (NM_002223, intron 50 of 56) 222594 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 530-208 chr5 146738813 146739154 + 2 NA intron (NM_001271899, intron 2 of 9) L2c|LINE|L2 139802 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 389-193 chr2 198639835 198640071 + 2 NA Intergenic Intergenic -264856 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 316-158 chr13 94338436 94338659 + 2 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) 141135 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 419-94 chr14 62766342 62766699 + 2 NA intron (NM_172375, intron 9 of 9) L1MA1|LINE|L1 278938 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 903-30 chr5 45963835 45964365 + 2 NA Intergenic ALR/Alpha|Satellite|centr -267720 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 292-246 chr2 222377165 222377338 + 2 NA Intergenic L1MA3|LINE|L1 -46737 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 353-501 chr7 125507545 125507894 + 2 NA Intergenic Intergenic -243428 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 273-43 chr10 30970622 30970824 + 2 NA intron (NR_026560, intron 1 of 6) intron (NR_026560, intron 1 of 6) 28794 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 235-128 chr16 81285946 81286115 + 2 NA intron (NM_017429, intron 9 of 10) (TTTGT)n|Simple_repeat|Simple_repeat -28936 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 467-112 chr17 73905143 73905531 + 2 NA Intergenic L1ME4a|LINE|L1 -76800 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 245-95 chr12 42882687 42882857 + 2 NA Intergenic Intergenic 190556 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 353-14 chr1 65835907 65836242 + 2 NA intron (NM_002600, intron 1 of 16) AluSq2|SINE|Alu 43179 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 497-87 chr16 51743528 51743939 + 2 NA Intergenic L1MA3|LINE|L1 -18786 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 503 chr1 7039527 7039799 + 2 NA intron (NM_001349608, intron 2 of 21) intron (NM_001349608, intron 2 of 21) 254209 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 157-50 chr18 10670688 10670790 + 2 NA 3' UTR (NM_022068, exon 52 of 52) 3' UTR (NM_022068, exon 52 of 52) 8806 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 449-120 chr2 76940160 76940454 + 2 NA intron (NR_146416, intron 1 of 1) L1PA13|LINE|L1 -45658 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 378-394 chr7 31033279 31033480 + 2 NA Intergenic Intergenic -18929 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 216-332 chr8 76708133 76708321 + 2 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -24952 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 252-316 chr5 14293758 14293916 + 2 NA intron (NM_007118, intron 6 of 56) intron (NM_007118, intron 6 of 56) 150495 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 308-15 chr1 78474899 78475062 + 2 NA Intergenic MIRc|SINE|MIR -15994 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 232-82 chr12 118825421 118825619 + 2 NA intron (NR_134997, intron 2 of 2) MLT1A0|LTR|ERVL-MaLR 8016 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 356-471 chr8 55019471 55019750 + 2 NA Intergenic L1MD1|LINE|L1 -82418 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 789-39 chr5 120111363 120111911 + 2 NA Intergenic Intergenic -352641 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 359-279 chr20 20187293 20187621 + 2 NA intron (NM_015585, intron 13 of 26) MER45C|DNA|hAT-Tip100 130811 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 394-186 chr2 158521983 158522322 + 2 NA intron (NM_001005476, intron 1 of 20) intron (NM_001005476, intron 1 of 20) 65200 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 527-49 chr11 62538365 62538737 + 2 NA intron (NM_024060, intron 1 of 5) intron (NM_024060, intron 1 of 5) 7113 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 304-51 chr10 51790796 51791071 + 2 NA intron (NM_001098512, intron 3 of 17) L3|LINE|CR1 -91338 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 292-229 chr2 133571106 133571291 + 2 NA Intergenic Intergenic -2735 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 172-120 chr7 6390664 6390803 + 2 NA intron (NM_006908, intron 2 of 5) L1M5|LINE|L1 16206 NM_018890 5879 Hs.413812 NM_006908 ENSG00000136238 RAC1 MIG5|MRD48|Rac-1|TC-25|p21-Rac1 Rac family small GTPase 1 protein-coding 347-303 chr3 61459208 61459424 + 2 NA Intergenic Intergenic -102255 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 168-58 chr2 95170969 95171128 + 2 NA intron (NM_001291604, intron 1 of 2) intron (NM_001291604, intron 1 of 2) 5239 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 201-194 chr5 53697939 53698101 + 2 NA Intergenic L1MA9|LINE|L1 121662 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 563-25 chr10 108601431 108601842 + 2 NA Intergenic MER21C|LTR|ERVL -532343 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 495-35 chr11 39594387 39594724 + 2 NA Intergenic Intergenic 698575 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 377-141 chr15 87676362 87676578 + 2 NA Intergenic L1MEc|LINE|L1 99541 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 554-161 chr4 105723419 105723920 + 2 NA intron (NM_001370181, intron 3 of 11) intron (NM_001370181, intron 3 of 11) 12856 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 358-164 chr17 78147344 78147547 + 2 NA intron (NM_001163075, intron 2 of 4) intron (NM_001163075, intron 2 of 4) 1060 NM_001163075 100141515 Hs.633034 NM_001163075 ENSG00000187997 C17orf99 IL-40|UNQ464 chromosome 17 open reading frame 99 protein-coding 342-145 chr14 68131576 68131762 + 2 NA intron (NM_133509, intron 7 of 10) AluSx|SINE|Alu 308077 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 321-207 chr16 13049543 13049767 + 2 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 148057 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 378-215 chr2 21038256 21038501 + 2 NA intron (NM_000384, intron 4 of 28) AluSx|SINE|Alu 5695 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 277-420 chr8 109163347 109163594 + 2 NA Intergenic Intergenic 76842 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 262-384 chr6 121700642 121700883 + 2 NA Intergenic L1M4b|LINE|L1 265116 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 315-520 chr9 112714066 112714326 + 2 NA intron (NM_001329590, intron 1 of 4) L1ME2|LINE|L1 3921 NR_138055 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 176-26 chr14 62670718 62670848 + 2 NA Intergenic Intergenic 374675 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 432-42 chr11 5023562 5023971 + 2 NA Intergenic L1PREC2|LINE|L1 -22760 NM_001001916 119679 Hs.553558 NM_001001916 ENSG00000205495 OR52J3 OR11-32 olfactory receptor family 52 subfamily J member 3 protein-coding 347-90 chr12 29806038 29806309 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -21414 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 161-126 chr8 106777040 106777156 + 2 NA Intergenic L1MA10|LINE|L1 -6854 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 291-258 chr20 24937512 24937702 + 2 NA Intergenic Intergenic -11662 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 328-229 chr19 9645321 9645545 + 2 NA 3' UTR (NM_001130031, exon 6 of 6) 3' UTR (NM_001130031, exon 6 of 6) 23951 NR_122038 284385 Hs.651747 NM_001242812 ENSG00000267106 ZNF561-AS1 C19orf82 ZNF561 antisense RNA 1 (head to head) ncRNA 390-304 chr5 129336210 129336561 + 2 NA Intergenic L1MA2|LINE|L1 60762 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 239-347 chr6 45859832 45860065 + 2 NA Intergenic Intergenic 77649 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 420-259 chr6 134704464 134704789 + 2 NA Intergenic Intergenic -164621 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 230-306 chr5 113445562 113445692 + 2 NA intron (NM_001085377, intron 1 of 18) L1PA16|LINE|L1 -10638 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 171-98 chr4 176132722 176132845 + 2 NA intron (NM_170710, intron 8 of 30) intron (NM_170710, intron 8 of 30) 62802 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 276-43 chr10 14481919 14482066 + 2 NA Intergenic Intergenic 45416 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 340-494 chr7 4354142 4354357 + 2 NA Intergenic L1ME1|LINE|L1 -219412 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 119-19 chr16 10883781 10883849 + 2 NA intron (NR_104444, intron 1 of 17) LTR16A|LTR|ERVL 6613 NR_104444 4261 Hs.592051 NM_000246 ENSG00000179583 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II major histocompatibility complex transactivator protein-coding 494-163 chr3 957416 957883 + 2 NA Intergenic Intergenic -135375 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 353-189 chr17 65097931 65098221 + 2 NA Intergenic FLAM_C|SINE|Alu -2736 NR_110801 100507002 Hs.729924 NR_110801 LOC100507002 - uncharacterized LOC100507002 ncRNA 281-227 chr2 124272855 124273102 + 2 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 247691 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 736-30 chr16 78949681 78950231 + 2 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 650781 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 284-335 chr5 145228158 145228367 + 2 NA Intergenic MamRep1527|LTR|LTR 607080 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 416-232 chr3 126424406 126424742 + 2 NA intron (NM_182628, intron 13 of 16) intron (NM_182628, intron 13 of 16) 29665 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 125-25 chr19 36372357 36372436 + 2 NA intron (NM_001297619, intron 1 of 4) L1M3e|LINE|L1 6805 NM_001297619 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 290-66 chr11 4382412 4382663 + 2 NA Intergenic L1PA16|LINE|L1 11165 NM_003141 6737 Hs.532357 NM_003141 ENSG00000132109 TRIM21 RNF81|RO52|Ro/SSA|SSA|SSA1 tripartite motif containing 21 protein-coding 318-526 chr7 145279259 145279565 + 2 NA Intergenic L1MA2|LINE|L1 -443359 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 243-366 chr5 114669466 114669651 + 2 NA intron (NR_130785, intron 1 of 12) L2c|LINE|L2 93517 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 474-142 chr2 105471628 105472021 + 2 NA Intergenic Intergenic -33311 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 401-346 chr9 77550073 77550378 + 2 NA intron (NM_004297, intron 1 of 6) intron (NM_004297, intron 1 of 6) 98097 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 326-203 chr18 4209347 4209556 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -55151 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 330-181 chr16 12399388 12399703 + 2 NA intron (NM_032167, intron 17 of 20) MIRb|SINE|MIR -320776 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 312-445 chr6 38645725 38646019 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -5943 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 307-119 chr13 58330617 58330826 + 2 NA Intergenic Intergenic -97604 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 366-275 chr3 44583313 44583635 + 2 NA TTS (NM_001288591) TTS (NM_001288591) -1490 NM_173658 285349 Hs.733134 NM_173658 ENSG00000144792 ZNF660 - zinc finger protein 660 protein-coding 267-276 chr3 180533179 180533421 + 2 NA Intergenic L1MA1|LINE|L1 -68863 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 501-176 chr3 141854815 141855273 + 2 NA Intergenic Intergenic -21599 NM_001679 483 Hs.477789 NM_001679 ENSG00000069849 ATP1B3 ATPB-3|CD298 ATPase Na+/K+ transporting subunit beta 3 protein-coding 433-173 chr3 86050399 86050814 + 2 NA intron (NM_001256502, intron 9 of 10) MSTA-int|LTR|ERVL-MaLR -222556 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 787-3 chr1 208768112 208768674 + 2 NA Intergenic Intergenic 39705 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 600-45 chr16 82507947 82508358 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -118817 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 375-365 chr6 159226345 159226686 + 2 NA exon (NM_032532, exon 9 of 23) exon (NM_032532, exon 9 of 23) -56508 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 286-255 chr20 59895972 59896235 + 2 NA intron (NM_014258, intron 19 of 44) MIR|SINE|MIR 37534 NM_014258 10388 Hs.202676 NM_014258 ENSG00000196074 SYCP2 SCP-2|SCP2 synaptonemal complex protein 2 protein-coding 483-213 chr5 98399356 98399665 + 2 NA Intergenic MIRb|SINE|MIR -238271 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 344-14 chr1 82374618 82374852 + 2 NA Intergenic MLT2C1|LTR|ERVL -528448 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 282-328 chr4 32615712 32615898 + 2 NA Intergenic ERVL-int|LTR|ERVL 264767 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 302-371 chr6 37964168 37964401 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 144557 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 268-147 chr16 72457045 72457301 + 2 NA intron (NR_159371, intron 3 of 5) L1MA10|LINE|L1 207797 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 285-95 chr12 107587916 107588115 + 2 NA intron (NM_001018072, intron 4 of 16) MLT1C|LTR|ERVL-MaLR 7141 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 376-249 chr3 76950267 76950593 + 2 NA Intergenic Intergenic -89669 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 328-274 chr2 108149653 108149871 + 2 NA Intergenic Intergenic 68079 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 284-304 chr5 2194814 2194988 + 2 NA Intergenic Intergenic 117300 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 370-39 chr10 35741736 35741953 + 2 NA Intergenic L2|LINE|L2 -36458 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 222-89 chr12 95979271 95979460 + 2 NA intron (NM_002108, intron 17 of 20) MIR|SINE|MIR 16979 NM_002108 3034 Hs.190783 NM_002108 ENSG00000084110 HAL HIS|HSTD histidine ammonia-lyase protein-coding 405-213 chr3 179974902 179975132 + 2 NA promoter-TSS (NM_001349395) promoter-TSS (NM_001349395) -792 NM_001256755 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 339-522 chr7 22352330 22352510 + 2 NA intron (NM_012294, intron 1 of 25) intron (NM_012294, intron 1 of 25) 4734 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 347-55 chr10 66257789 66258068 + 2 NA intron (NM_001127384, intron 13 of 17) MER84-int|LTR|ERV1 -668108 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 504-115 chr19 55780402 55780835 + 2 NA Intergenic AluJo|SINE|Alu 11500 NM_001277397 729974 NM_001277397 ENSG00000229292 RFPL4AL1 RNF210B ret finger protein like 4A like 1 protein-coding 396-257 chr4 108498366 108498596 + 2 NA Intergenic L1MA8|LINE|L1 -58752 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 362-465 chr9 91485400 91485711 + 2 NA Intergenic Intergenic -60929 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 427-20 chr10 39006339 39006587 + 2 NA Intergenic ALR/Alpha|Satellite|centr 309867 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 311-149 chr14 78483041 78483315 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 79459 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 282-22 chr1 201341053 201341214 + 2 NA Intergenic L1MEf|LINE|L1 36547 NM_001001430 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 138-95 chr8 129480963 129481056 + 2 NA intron (NR_130917, intron 1 of 3) MER46C|DNA|TcMar-Tigger 3133 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 336-449 chr5 54937332 54937580 + 2 NA Intergenic Intergenic 48137 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 348-104 chr12 2515239 2515514 + 2 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 156844 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 306-182 chr16 48796643 48796809 + 2 NA Intergenic Intergenic -186546 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 355-488 chr8 36050767 36051113 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -340620 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 380-43 chr10 61799304 61799661 + 2 NA Intergenic AluJb|SINE|Alu -102217 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 260-132 chr14 68611077 68611295 + 2 NA exon (NM_001321821, exon 11 of 11) exon (NM_001321821, exon 11 of 11) 17601 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 387-278 chr5 53132976 53133331 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 23311 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 600-29 chr12 103017288 103017646 + 2 NA Intergenic Intergenic -59026 NM_001354304 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 437-70 chr14 39903915 39904210 + 2 NA Intergenic LTR37-int|LTR|ERV1 -471562 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 315-31 chr1 198774194 198774456 + 2 NA Intergenic Intergenic 84657 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 245-274 chr5 15302834 15303027 + 2 NA Intergenic Intergenic -36370 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 331-312 chr20 14365220 14365529 + 2 NA intron (NM_001351663, intron 3 of 17) L1MB5|LINE|L1 -27707 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 825-28 chr20 39202649 39203268 + 2 NA Intergenic MIR|SINE|MIR 21790 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 226-19 chr1 173658549 173658719 + 2 NA intron (NM_198493, intron 2 of 5) intron (NM_198493, intron 2 of 5) 11217 NR_158771 339416 Hs.130054 NM_198493 ENSG00000183831 ANKRD45 CT117 ankyrin repeat domain 45 protein-coding 196-73 chr14 54609769 54609925 + 2 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 42235 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 237-339 chr7 278384 278542 + 2 NA Intergenic L1MD|LINE|L1 85892 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 413-126 chr19 36236613 36236890 + 2 NA exon (NM_007145, exon 4 of 4) exon (NM_007145, exon 4 of 4) 9177 NM_001366188 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 358-520 chr9 115723409 115723630 + 2 NA Intergenic Intergenic 20720 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 338-261 chr2 75939604 75939858 + 2 NA Intergenic Intergenic -228816 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 843-5 chr10 101044314 101044817 + 2 NA Intergenic L1MB2|LINE|L1 13326 NM_030971 81855 Hs.283844 NM_030971 ENSG00000107819 SFXN3 BA108L7.2|SFX3|SLC56A3 sideroflexin 3 protein-coding 554-176 chr5 83614587 83614939 + 2 NA Intergenic LOR1b|LTR|ERV1 -52449 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 514-60 chr12 46574290 46574635 + 2 NA intron (NR_125377, intron 3 of 3) intron (NR_125377, intron 3 of 3) 190355 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 293-418 chr7 141891534 141891713 + 2 NA Intergenic L1MC5|LINE|L1 -27253 NM_001001656 130075 Hs.690171 NM_001001656 ENSG00000258083 OR9A4 - olfactory receptor family 9 subfamily A member 4 protein-coding 241-252 chr3 166576025 166576201 + 2 NA Intergenic Intergenic -322570 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 319-252 chr2 107201936 107202224 + 2 NA intron (NR_049853, intron 2 of 3) MSTA|LTR|ERVL-MaLR 147445 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 231-339 chr7 113511561 113511719 + 2 NA Intergenic L1PA10|LINE|L1 -393058 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 372-280 chr20 18376477 18376730 + 2 NA Intergenic Intergenic -2446 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 314-207 chr16 49289873 49290135 + 2 NA Intergenic Intergenic -8166 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 259-40 chr10 31709681 31709859 + 2 NA Intergenic Intergenic 199156 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 340-184 chr16 12466938 12467250 + 2 NA intron (NM_032167, intron 18 of 20) MIRb|SINE|MIR -253227 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 519-195 chr6 63760660 63761072 + 2 NA intron (NM_001292009, intron 41 of 43) intron (NM_001292009, intron 41 of 43) -45970 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 332-61 chr10 59419233 59419504 + 2 NA Intergenic L1MA2|LINE|L1 -56187 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 340-314 chr20 24612492 24612724 + 2 NA intron (NM_024893, intron 3 of 3) intron (NM_024893, intron 3 of 3) 142647 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 257-284 chr3 186392517 186392709 + 2 NA Intergenic L2c|LINE|L2 -30379 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 536-55 chr11 120998181 120998570 + 2 NA Intergenic Intergenic -25697 NM_152715 219899 Hs.504136 NM_152715 ENSG00000154114 TBCEL El|LRRC35 tubulin folding cofactor E like protein-coding 253-299 chr4 87672306 87672491 + 2 NA Intergenic L1PA17|LINE|L1 22118 NM_001079911 1758 Hs.652366 NM_004407 ENSG00000152592 DMP1 ARHP|ARHR|DMP-1 dentin matrix acidic phosphoprotein 1 protein-coding 575-194 chr8 80118562 80119072 + 2 NA intron (NM_001025253, intron 1 of 7) L1MB8|LINE|L1 -37986 NM_001287142 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 462-233 chr5 116277931 116278288 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 22366 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 156-13 chr10 81801512 81801633 + 2 NA Intergenic Intergenic -73622 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 299-325 chr4 63155858 63156017 + 2 NA Intergenic Intergenic -994172 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 319-331 chr3 74336896 74337201 + 2 NA intron (NM_020872, intron 10 of 21) intron (NM_020872, intron 10 of 21) 184092 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 353-249 chr2 107211243 107211497 + 2 NA intron (NR_049853, intron 2 of 3) LTR49-int|LTR|ERV1 138155 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 295-454 chr7 118593977 118594163 + 2 NA Intergenic Intergenic 369366 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 542-93 chr2 33864747 33865125 + 2 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -136719 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 292-366 chr5 161226443 161226680 + 2 NA Intergenic L1MC5|LINE|L1 -287935 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 316-55 chr10 17581545 17581814 + 2 NA Intergenic Intergenic 35695 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 285-196 chr2 60290189 60290419 + 2 NA Intergenic Intergenic 92732 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 129-51 chr20 47428129 47428216 + 2 NA Intergenic Intergenic -16028 NR_146496 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 303-403 chr6 139001273 139001437 + 2 NA Intergenic Intergenic -13094 NM_001286611 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 415-213 chr5 45141374 45141768 + 2 NA Intergenic Intergenic 332624 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 238-243 chr3 97629601 97629762 + 2 NA intron (NM_001080448, intron 13 of 17) intron (NM_001080448, intron 13 of 17) -134840 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 375-171 chr17 73603965 73604223 + 2 NA intron (NM_001144952, intron 1 of 44) (CGCCAG)n|Simple_repeat|Simple_repeat 40351 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 274-362 chr7 107376927 107377192 + 2 NA intron (NM_181733, intron 7 of 20) L1ME3A|LINE|L1 -92998 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 154-10 chr10 7636104 7636212 + 2 NA intron (NM_001001851, intron 5 of 11) intron (NM_001001851, intron 5 of 11) -16485 NM_032817 80760 Hs.498586 NM_030569 ENSG00000123243 ITIH5 ITI-HC5|PP14776 inter-alpha-trypsin inhibitor heavy chain 5 protein-coding 379-322 chr7 99195821 99196127 + 2 NA intron (NM_001145715, intron 3 of 9) intron (NM_001145715, intron 3 of 9) 11515 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 271-154 chr16 48425397 48425630 + 2 NA Intergenic Intergenic -40100 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 211-330 chr9 135629855 135630008 + 2 NA intron (NM_182974, intron 3 of 4) L1MB7|LINE|L1 9609 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 270-297 chr5 52095461 52095627 + 2 NA Intergenic L1MC1|LINE|L1 87513 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 231-290 chr5 84583758 84583935 + 2 NA Intergenic Intergenic -198966 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 351-16 chr1 158664744 158664997 + 2 NA intron (NM_003126, intron 16 of 51) MIR3|SINE|MIR 21845 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 261-383 chr8 112000856 112001066 + 2 NA Intergenic Intergenic 624322 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 482-258 chr7 110219239 110219667 + 2 NA Intergenic L1P4|LINE|L1 -259240 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 235-235 chr3 108690063 108690273 + 2 NA intron (NM_014648, intron 31 of 32) intron (NM_014648, intron 31 of 32) 67115 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 569-172 chr7 96873893 96874289 + 2 NA Intergenic L1ME3E|LINE|L1 -131462 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 185-54 chr13 98022160 98022301 + 2 NA 3' UTR (NM_002271, exon 29 of 29) 3' UTR (NM_002271, exon 29 of 29) 68555 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 425-176 chr3 6614382 6614744 + 2 NA Intergenic Intergenic 190886 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 363-48 chr10 44510846 44511069 + 2 NA Intergenic MIR|SINE|MIR -125860 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 283-242 chr2 116576485 116576750 + 2 NA Intergenic L1MA1|LINE|L1 1232802 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 282-105 chr12 133064883 133065098 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -15213 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 118-8 chr10 61701277 61701360 + 2 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 38357 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 228-311 chr7 18234906 18235113 + 2 NA intron (NM_001321872, intron 2 of 11) MER5A|DNA|hAT-Charlie -55083 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 498-194 chr4 61670370 61670728 + 2 NA intron (NM_001371343, intron 5 of 23) LTR77|LTR|ERV1 468377 NM_001371342 525-129 chr2 149124172 149124582 + 2 NA intron (NM_001317002, intron 2 of 7) intron (NM_001317002, intron 2 of 7) 6203 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 364-307 chr4 74572004 74572325 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 127028 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 283-414 chr7 44337735 44337914 + 2 NA Intergenic L1MEf|LINE|L1 -12193 NM_172079 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 530-211 chr5 163902893 163903401 + 2 NA Intergenic L1M3|LINE|L1 397528 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 555-90 chr2 49297876 49298387 + 2 NA Intergenic MIRb|SINE|MIR -143604 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 340-532 chr8 76985357 76985578 + 2 NA intron (NM_001172087, intron 2 of 2) L1MA9|LINE|L1 14611 NM_000318 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 332-208 chr18 7755497 7755729 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 188297 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 502-214 chr5 22453447 22453787 + 2 NA intron (NM_004061, intron 2 of 14) L1MA6|LINE|L1 -239767 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 351-473 chr8 54350512 54350729 + 2 NA Intergenic Intergenic 19934 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 469-220 chr5 57714116 57714477 + 2 NA Intergenic Intergenic 63636 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 432-209 chr4 134880746 134881003 + 2 NA Intergenic Intergenic 242685 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 277-196 chr2 74219646 74219836 + 2 NA intron (NM_133478, intron 30 of 30) intron (NM_133478, intron 30 of 30) 21126 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 546-89 chr17 70939590 70939993 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 262388 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 211-133 chr2 9744165 9744309 + 2 NA Intergenic Intergenic -99205 NM_001318977 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 272-451 chr8 101572438 101572690 + 2 NA intron (NM_024915, intron 5 of 15) intron (NM_024915, intron 5 of 15) 80125 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 210-240 chr5 167733855 167734040 + 2 NA intron (NM_001368145, intron 1 of 26) MIRc|SINE|MIR -20982 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 482-227 chr6 83070215 83070634 + 2 NA intron (NM_015018, intron 1 of 38) intron (NM_015018, intron 1 of 38) 2758 NM_001199942 23033 Hs.520246 NM_015018 ENSG00000083097 DOP1A DOP1|DOPEY1|KIAA1117|dJ202D23.2 DOP1 leucine zipper like protein A protein-coding 154-67 chr22 26086785 26086932 + 2 NA Intergenic Intergenic -82604 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 253-271 chr3 120988496 120988722 + 2 NA intron (NR_145517, intron 3 of 8) L1MD|LINE|L1 -61031 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 491-139 chr2 238750656 238750963 + 2 NA Intergenic L1MEd|LINE|L1 97098 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 177 chr1 41910655 41910790 + 2 NA intron (NR_038261, intron 2 of 3) L1ME3E|LINE|L1 8200 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 326-432 chr5 149224184 149224373 + 2 NA intron (NM_001370418, intron 7 of 18) L3|LINE|CR1 -47560 NM_001323063 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 323-210 chr18 78843993 78844226 + 2 NA Intergenic L1M4c|LINE|L1 -136166 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 337-123 chr12 108385758 108386064 + 2 NA Intergenic Intergenic -46600 NM_004072 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 522-255 chr8 111838832 111839212 + 2 NA Intergenic L1MA8|LINE|L1 462383 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 298-165 chr17 61379021 61379218 + 2 NA intron (NM_001099432, intron 24 of 24) intron (NM_001099432, intron 24 of 24) -11415 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 547-49 chr12 33372732 33373097 + 2 NA Intergenic Intergenic 66905 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 310-137 chr14 61947896 61948175 + 2 NA intron (NM_001367663, intron 1 of 7) L2c|LINE|L2 20340 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 311-152 chr15 25266416 25266613 + 2 NA promoter-TSS (NR_047033) promoter-TSS (NR_047033) -77 NR_047033 100873857 NR_047033 ENSG00000276844 SNORD115-46 HBII-52-46 small nucleolar RNA, C/D box 115-46 snoRNA 260-324 chr4 142656457 142656662 + 2 NA intron (NM_003866, intron 2 of 26) MER61-int|LTR|ERV1 189976 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 287-448 chrX 45531975 45532180 + 2 NA Intergenic Intergenic 26689 NR_104645 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 362-375 chr6 49366415 49366734 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 96679 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 340-520 chr8 15016500 15016698 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -163089 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 250-251 chr21 24868821 24869044 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 28382 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 443-100 chr14 98994267 98994574 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR 277777 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 281-265 chr21 15559515 15559735 + 2 NA Intergenic MLT2F|LTR|ERVL -170309 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 374-355 chr7 19171206 19171477 + 2 NA Intergenic LTR16A|LTR|ERVL -25920 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 253-318 chr5 19279830 19280055 + 2 NA Intergenic Intergenic 606330 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 509-179 chr4 178105260 178105650 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -197519 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 443-52 chr11 48599722 48600040 + 2 NA Intergenic L1PA4|LINE|L1 111088 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 361-452 chr8 100778679 100778897 + 2 NA Intergenic AluJr4|SINE|Alu -56700 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 615-8 chr10 80848435 80848922 + 2 NA Intergenic L1MA4|LINE|L1 198881 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 458-37 chr11 60270261 60270608 + 2 NA Intergenic L1PA15|LINE|L1 -10232 NM_001243266 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 312-438 chr5 170352614 170352813 + 2 NA promoter-TSS (NM_001034838) promoter-TSS (NM_001034838) -774 NM_001034838 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 405-342 chr9 29818916 29819275 + 2 NA Intergenic L1M2c|LINE|L1 589359 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 304-522 chr8 103033892 103034133 + 2 NA intron (NM_001695, intron 1 of 12) L2b|LINE|L2 12929 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 132-20 chr12 116579932 116580029 + 2 NA Intergenic AluSx1|SINE|Alu 20599 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 341-36 chr1 175277479 175277775 + 2 NA Intergenic MER41C|LTR|ERV1 -84640 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 622-78 chr20 47036694 47037243 + 2 NA intron (NM_172110, intron 5 of 13) THE1D|LTR|ERVL-MaLR -129999 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 318-520 chr7 92981961 92982149 + 2 NA Intergenic L1MC3|LINE|L1 135924 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 522-65 chr12 79757470 79757888 + 2 NA Intergenic L1M5|LINE|L1 -66582 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 309-355 chr3 104009353 104009625 + 2 NA Intergenic L1ME3A|LINE|L1 -485373 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 331-292 chr2 158950917 158951203 + 2 NA Intergenic Intergenic -17574 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 211-215 chr4 106641450 106641620 + 2 NA Intergenic Intergenic 207911 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 303-423 chr7 45357110 45357291 + 2 NA Intergenic L1MC3|LINE|L1 199409 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 205-268 chr8 50804816 50805005 + 2 NA Intergenic MER61-int|LTR|ERV1 640779 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 235-258 chr4 69090062 69090220 + 2 NA intron (NM_001349568, intron 2 of 6) intron (NM_001349568, intron 2 of 6) -6333 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 145-75 chr6 135091270 135091347 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -36486 NM_001145158 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 233-88 chr14 29570249 29570447 + 2 NA Intergenic Intergenic 356748 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 352-105 chr12 48722870 48723069 + 2 NA Intergenic L1MCa|LINE|L1 -4466 NM_001351125 255411 Hs.404103 NM_001351123 ENSG00000257987 TEX49 LINC00935 testis expressed 49 protein-coding 265-265 chr4 56644961 56645168 + 2 NA Intergenic Intergenic 11458 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 428-221 chr4 127300497 127300893 + 2 NA Intergenic L1PB1|LINE|L1 -332262 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 350-272 chr20 39788359 39788535 + 2 NA Intergenic Intergenic -216014 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 375-80 chr11 88034155 88034506 + 2 NA Intergenic L1ME1|LINE|L1 141113 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 291-263 chr20 52147096 52147346 + 2 NA intron (NM_199427, intron 5 of 8) AluSg7|SINE|Alu -41737 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 278-289 chr3 154344178 154344356 + 2 NA intron (NM_001038705, intron 3 of 3) intron (NM_001038705, intron 3 of 3) -19770 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 297-311 chr3 193081755 193081944 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -159373 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 366-37 chr1 245168504 245168759 + 2 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 13646 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 352 chr1 12743130 12743431 + 2 NA Intergenic LTR51|LTR|ERV1 -2920 NM_152290 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 583-146 chr6 38263073 38263369 + 2 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -218375 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 799-22 chr18 4787481 4788028 + 2 NA Intergenic L1MEc|LINE|L1 -293428 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 610-38 chr12 111003019 111003518 + 2 NA Intergenic Intergenic -30897 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 672-24 chr13 94941115 94941599 + 2 NA Intergenic L2a|LINE|L2 -18684 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 166-7 chr10 63132033 63132160 + 2 NA Intergenic L2|LINE|L2 -1151 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 256-135 chr15 46586355 46586606 + 2 NA Intergenic Intergenic -597609 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 286-444 chr8 54371242 54371471 + 2 NA Intergenic Intergenic 40670 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 380-8 chr1 51950793 51951014 + 2 NA intron (NM_002867, intron 2 of 4) intron (NM_002867, intron 2 of 4) 39797 NM_002867 5865 Hs.123072 NM_002867 ENSG00000169213 RAB3B - RAB3B, member RAS oncogene family protein-coding 298-414 chr6 152221611 152221844 + 2 NA intron (NM_182961, intron 117 of 145) intron (NM_182961, intron 117 of 145) -36349 NM_001347701 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 328-8 chr1 58826142 58826312 + 2 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 41076 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 668-79 chr5 17643997 17644495 + 2 NA Intergenic AluY|SINE|Alu 11392 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 338-191 chr16 51306538 51306744 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -155369 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 303-277 chr3 27127377 27127559 + 2 NA intron (NM_001304384, intron 13 of 16) Tigger3a|DNA|TcMar-Tigger 89055 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 287-352 chr6 65610382 65610576 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -30675 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 350-195 chr18 61610861 61611095 + 2 NA Intergenic Intergenic -137198 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 425-148 chr2 148236874 148237253 + 2 NA intron (NM_018328, intron 4 of 14) Tigger1|DNA|TcMar-Tigger -215459 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 302-428 chr8 10381546 10381740 + 2 NA intron (NM_001199729, intron 6 of 6) intron (NM_001199729, intron 6 of 6) -92922 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 442-123 chr2 22328235 22328547 + 2 NA Intergenic Intergenic -208088 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 366-112 chr12 113487844 113488168 + 2 NA Intergenic Intergenic 16003 NR_126425 104355219 Hs.641707 NR_126425 LHX5-AS1 locus 4010|locus4010 LHX5 antisense RNA 1 ncRNA 295-168 chr16 59816361 59816545 + 2 NA Intergenic L1MA8|LINE|L1 -38900 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 312-58 chr10 105571615 105571780 + 2 NA Intergenic L1PA15|LINE|L1 248636 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 248-310 chr5 43861700 43861883 + 2 NA Intergenic Intergenic -258561 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 196-56 chr12 17391895 17392089 + 2 NA Intergenic Intergenic 197086 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 282-467 chr8 127594984 127595249 + 2 NA Intergenic MIRb|SINE|MIR -112977 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 273-17 chr1 106301868 106302071 + 2 NA Intergenic L1MC2|LINE|L1 -273716 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 417-107 chr17 61717147 61717464 + 2 NA intron (NM_032043, intron 16 of 19) L1MEc|LINE|L1 -126086 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 390-203 chr2 215704578 215704838 + 2 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -13335 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 352-512 chr7 136767247 136767436 + 2 NA Intergenic L1MA2|LINE|L1 -101311 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 175-147 chr6 133248653 133248800 + 2 NA intron (NM_172103, intron 1 of 18) intron (NM_172103, intron 1 of 18) 7227 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 399-253 chr5 87929772 87930167 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 267927 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 292-71 chr11 26822746 26822941 + 2 NA Intergenic Intergenic -100783 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 333-446 chr5 50236201 50236453 + 2 NA Intergenic ALR/Alpha|Satellite|centr 204961 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 343-453 chr5 163739220 163739418 + 2 NA Intergenic L1MC3|LINE|L1 233700 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 317-322 chr3 175815613 175815833 + 2 NA Intergenic Intergenic -39390 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 292-33 chr1 238213136 238213350 + 2 NA Intergenic L1M5|LINE|L1 272774 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 344-317 chr3 82986621 82986929 + 2 NA Intergenic Intergenic 1000633 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 256-116 chr14 32818247 32818428 + 2 NA intron (NM_004274, intron 12 of 13) intron (NM_004274, intron 12 of 13) -120542 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 325-69 chr10 68175821 68176084 + 2 NA intron (NR_045662, intron 12 of 19) AluJb|SINE|Alu 56161 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 554-24 chr1 248116861 248117308 + 2 NA Intergenic HERVIP10B3-int|LTR|ERV1 -5052 NR_002141 388762 Hs.528509 NR_002141 OR2M1P JCG10|OR2M1|OST037 olfactory receptor family 2 subfamily M member 1 pseudogene pseudo 284-98 chr12 108505250 108505431 + 2 NA Intergenic LTR9|LTR|ERV1 -9937 NM_007076 11153 Hs.661891 NM_007076 ENSG00000198855 FICD HIP13|HYPE|UNQ3041 FIC domain containing protein-coding 285-442 chr8 139194067 139194239 + 2 NA Intergenic Intergenic -280112 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 339-589 chr8 122259922 122260240 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 308563 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 630-18 chr12 33564985 33565440 + 2 NA Intergenic L1MA5|LINE|L1 -125393 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 491-209 chr5 53635670 53636049 + 2 NA intron (NR_134474, intron 3 of 5) intron (NR_134474, intron 3 of 5) 75220 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 351-115 chr13 108013664 108013960 + 2 NA Intergenic Intergenic -146316 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 261-238 chr3 59770135 59770296 + 2 NA intron (NM_001354590, intron 7 of 8) MIRb|SINE|MIR -111718 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 321-596 chr9 29821388 29821652 + 2 NA Intergenic L1M4|LINE|L1 586934 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 381-262 chr3 189025460 189025763 + 2 NA Intergenic Intergenic -77972 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 214-34 chr10 32655850 32656012 + 2 NA intron (NM_001321115, intron 21 of 43) L1MA6|LINE|L1 209791 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 315-110 chr12 97951475 97951741 + 2 NA Intergenic L3|LINE|CR1 -12487 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 262-175 chr18 2981935 2982169 + 2 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 29895 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 1352 chr10 76257358 76258120 + 2 NA intron (NM_001305581, intron 5 of 6) MLT1H|LTR|ERVL-MaLR 474978 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 338-471 chr6 63356525 63356776 + 2 NA Intergenic L2a|LINE|L2 -36667 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 326-470 chr6 140424237 140424508 + 2 NA Intergenic L1MA1|LINE|L1 219120 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 250-292 chr3 162262158 162262304 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 765423 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 587-86 chr20 42899784 42900247 + 2 NA intron (NM_133170, intron 1 of 31) MIR|SINE|MIR -68728 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 337-602 chrX 73228518 73228756 + 2 NA Intergenic LTR55|LTR|ERVL? -13786 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 196-101 chr18 1061314 1061457 + 2 NA Intergenic L1MA9|LINE|L1 -133392 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 1110-10 chr2 125954944 125956021 + 2 NA Intergenic Intergenic 162503 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 427-154 chr3 7140620 7140933 + 2 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -246759 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 696-27 chr12 25702664 25703197 + 2 NA Intergenic L1MEc|LINE|L1 -54352 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 394-191 chr2 182197516 182197896 + 2 NA intron (NM_005019, intron 10 of 14) L1ME3|LINE|L1 44357 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 404-257 chr5 51425717 51426068 + 2 NA Intergenic Intergenic 42444 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 476-161 chr20 54757378 54757781 + 2 NA Intergenic L1MDa|LINE|L1 281986 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 359-213 chr19 57556006 57556287 + 2 NA intron (NM_001277091, intron 2 of 5) intron (NM_001277091, intron 2 of 5) 3717 NM_001277091 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 327-107 chr12 13252344 13252615 + 2 NA Intergenic MLT2D|LTR|ERVL 55753 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 331-141 chr13 93771715 93771954 + 2 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 86639 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 294-147 chr15 98498311 98498490 + 2 NA intron (NM_182562, intron 2 of 6) L1MA5|LINE|L1 15936 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 339-105 chr11 79845452 79845734 + 2 NA Intergenic L1MEd|LINE|L1 -404563 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 201-71 chr13 54910044 54910178 + 2 NA Intergenic L1M4|LINE|L1 -264343 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 278-431 chr8 125559641 125559795 + 2 NA Intergenic L2a|LINE|L2 127509 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 248-399 chr8 69210597 69210786 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -106501 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 498-34 chr10 67711321 67711701 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -15316 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 306-41 chr1 200444000 200444199 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -34063 NM_001281293 23528 Hs.59757 NM_012482 ENSG00000162702 ZNF281 ZBP-99|ZNP-99 zinc finger protein 281 protein-coding 152-50 chr2 85100478 85100574 + 2 NA Intergenic L1MB7|LINE|L1 -32866 NM_031283 83439 Hs.516297 NM_031283 ENSG00000152284 TCF7L1 TCF-3|TCF3 transcription factor 7 like 1 protein-coding 334-473 chr6 136485084 136485394 + 2 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) -18364 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 425-182 chr3 61971096 61971450 + 2 NA intron (NM_002841, intron 2 of 29) AluSx1|SINE|Alu 347674 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 151-87 chr8 121966027 121966132 + 2 NA Intergenic Intergenic -324639 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 222-215 chr20 61002997 61003197 + 2 NA Intergenic MER50|LTR|ERV1 -75967 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 423-204 chr4 124441931 124442182 + 2 NA Intergenic L1MA4A|LINE|L1 116378 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 448-171 chr3 181582727 181583094 + 2 NA intron (NR_075091, intron 4 of 7) intron (NR_075091, intron 4 of 7) -27424 NR_075090 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 285-40 chr10 63118675 63118854 + 2 NA Intergenic Intergenic -14483 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 440-171 chr3 191587791 191588075 + 2 NA intron (NR_120606, intron 6 of 6) intron (NR_120606, intron 6 of 6) 126770 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 408-159 chr2 78879479 78879738 + 2 NA Intergenic Intergenic -146094 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 485-135 chr2 81678438 81678915 + 2 NA Intergenic L1MD1|LINE|L1 -211730 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 288-213 chr2 168225473 168225673 + 2 NA intron (NM_013233, intron 1 of 17) intron (NM_013233, intron 1 of 17) 22022 NM_013233 27347 Hs.276271 NM_013233 ENSG00000198648 STK39 DCHT|PASK|SPAK serine/threonine kinase 39 protein-coding 483-92 chr17 71952663 71952936 + 2 NA Intergenic L1MB5|LINE|L1 73180 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 287-385 chr7 87977756 87977954 + 2 NA intron (NM_001324421, intron 2 of 28) intron (NM_001324421, intron 2 of 28) 43604 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 334-253 chr2 37463915 37464181 + 2 NA Intergenic L1ME2|LINE|L1 119418 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 276-465 chr8 134977708 134977950 + 2 NA Intergenic Intergenic 127894 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 283-356 chr5 42043186 42043386 + 2 NA Intergenic Intergenic 118005 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 297-409 chr6 94174610 94174783 + 2 NA Intergenic Intergenic 456393 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 488-87 chr14 97741393 97741784 + 2 NA Intergenic L1PA8A|LINE|L1 21243 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 453-109 chr2 50898678 50899043 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 133272 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 240-426 chr8 131628119 131628302 + 2 NA Intergenic L1MA9|LINE|L1 -275883 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 686-6 chr1 112138204 112138717 + 2 NA Intergenic Intergenic 147924 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 265-374 chr7 128334331 128334499 + 2 NA intron (NM_018077, intron 8 of 18) intron (NM_018077, intron 8 of 18) 9493 NM_001166135 55131 Hs.274263 NM_018077 ENSG00000106344 RBM28 ANES RNA binding motif protein 28 protein-coding 782-31 chr2 161092598 161093193 + 2 NA Intergenic L1ME2z|LINE|L1 -44060 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 116-42 chr6 142443696 142443794 + 2 NA 3' UTR (NM_001032395, exon 24 of 24) 3' UTR (NM_001032395, exon 24 of 24) 141738 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 317-495 chr8 109934359 109934650 + 2 NA Intergenic MER113A|DNA|hAT-Charlie 41267 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 346-232 chr2 30658314 30658511 + 2 NA Intergenic LTR33C|LTR|ERVL 149034 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 445-74 chr14 80847451 80847877 + 2 NA intron (NM_152446, intron 9 of 24) intron (NM_152446, intron 9 of 24) 94074 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 413-190 chr3 79678442 79678766 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 89394 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 469-176 chr3 50404526 50404857 + 2 NA intron (NM_001291101, intron 3 of 37) L2b|LINE|L2 39328 NR_111913 11068 Hs.149443 NM_007022 ENSG00000114395 CYB561D2 101F6|TSP10|XXcos-LUCA11.4 cytochrome b561 family member D2 protein-coding 542-167 chr5 71916886 71917373 + 2 NA Intergenic L1MA4A|LINE|L1 -190346 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 385-224 chr21 33366341 33366673 + 2 NA Intergenic MER4C|LTR|ERV1 -36389 NM_005534 3460 Hs.634632 NM_005534 ENSG00000159128 IFNGR2 AF-1|IFGR2|IFNGT1|IMD28 interferon gamma receptor 2 protein-coding 395-135 chr17 39218703 39218935 + 2 NA intron (NM_001351360, intron 1 of 10) FLAM_C|SINE|Alu 7126 NM_198993 342667 Hs.145068 NM_198993 ENSG00000141750 STAC2 24b2|24b2/STAC2 SH3 and cysteine rich domain 2 protein-coding 547-132 chr3 748229 748735 + 2 NA intron (NR_110118, intron 1 of 3) intron (NR_110118, intron 1 of 3) 156377 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 292-157 chr15 100450516 100450740 + 2 NA intron (NM_001290341, intron 13 of 13) L1MA4A|LINE|L1 77689 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 280-289 chr4 64990812 64991015 + 2 NA intron (NR_033976, intron 1 of 6) intron (NR_033976, intron 1 of 6) 13587 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 356-304 chr22 28903515 28903854 + 2 NA intron (NM_001206998, intron 1 of 8) intron (NM_001206998, intron 1 of 8) -13705 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 407-222 chr4 67831843 67832078 + 2 NA intron (NM_004262, intron 7 of 9) intron (NM_004262, intron 7 of 9) 52042 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 798-58 chr5 169225061 169225605 + 2 NA intron (NM_003062, intron 3 of 35) intron (NM_003062, intron 3 of 35) 38361 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 227-351 chr7 71639747 71639884 + 2 NA intron (NM_022479, intron 6 of 10) intron (NM_022479, intron 6 of 10) -332045 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 315-492 chr8 124982008 124982242 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger 8830 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 338-590 chr9 75750371 75750631 + 2 NA Intergenic L1MA8|LINE|L1 -140143 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 456-106 chr15 58029565 58029975 + 2 NA intron (NM_170696, intron 1 of 11) L1PA4|LINE|L1 -15747 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 590-111 chr3 133950157 133950502 + 2 NA intron (NM_005630, intron 6 of 13) intron (NM_005630, intron 6 of 13) -20517 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 165-99 chr5 75778233 75778380 + 2 NA Intergenic Intergenic -60869 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 613-150 chrUn_GL000216v2 16385 16918 + 2 NA NA (CATTC)n|Satellite|Satellite NA NA 385-145 chr18 13532964 13533209 + 2 NA intron (NM_181482, intron 4 of 5) L2c|LINE|L2 73139 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 127-25 chr12 40764988 40765076 + 2 NA intron (NM_001256063, intron 1 of 15) L1M5|LINE|L1 -62906 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 228-344 chr8 115050340 115050498 + 2 NA Intergenic L1MB1|LINE|L1 617594 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 651-110 chr7 93886494 93886994 + 2 NA 3' UTR (NM_001271004, exon 5 of 5) 3' UTR (NM_001271004, exon 5 of 5) 4009 NM_006528 7980 Hs.438231 NM_006528 ENSG00000105825 TFPI2 PP5|REF1|TFPI-2 tissue factor pathway inhibitor 2 protein-coding 238-241 chr3 81210569 81210739 + 2 NA Intergenic L1MC5|LINE|L1 216786 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 261-119 chr15 46414805 46415012 + 2 NA Intergenic Intergenic 709713 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 414-130 chr18 5925837 5926048 + 2 NA Intergenic FLAM_A|SINE|Alu -29988 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 407-174 chr21 21968614 21968883 + 2 NA Intergenic ERVL-int|LTR|ERVL 129711 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 382-147 chr17 58659191 58659529 + 2 NA intron (NM_031272, intron 1 of 31) intron (NM_031272, intron 1 of 31) 32695 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 344-327 chr3 117242025 117242252 + 2 NA Intergenic Intergenic 320707 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 525-32 chr10 86319018 86319350 + 2 NA intron (NM_017551, intron 2 of 15) L2a|LINE|L2 47611 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 186-179 chr9 114965482 114965626 + 2 NA Intergenic L1ME5|LINE|L1 -34959 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 311-122 chr13 82027202 82027364 + 2 NA Intergenic L1PA16|LINE|L1 -800300 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 618-79 chr3 19763158 19763697 + 2 NA Intergenic Intergenic 170790 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 322-74 chr10 83614527 83614720 + 2 NA Intergenic L1M3c|LINE|L1 62466 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 673-118 chr8 64446550 64446950 + 2 NA Intergenic Intergenic 67601 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 209-35 chr10 36340473 36340646 + 2 NA Intergenic Intergenic 562257 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 319-355 chr3 192377891 192378087 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 31060 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 325-95 chr11 24531203 24531413 + 2 NA intron (NM_001252008, intron 1 of 11) L1MA5|LINE|L1 34255 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 493-93 chr15 61180388 61180715 + 2 NA intron (NM_134261, intron 1 of 10) L2c|LINE|L2 48751 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 197-214 chr8 129844818 129844989 + 2 NA intron (NM_001353307, intron 13 of 13) MER5A|DNA|hAT-Charlie -58279 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 304-418 chr5 58669704 58669957 + 2 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 86755 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 539-32 chr10 107552308 107552797 + 2 NA Intergenic Intergenic -387846 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 442-111 chr18 42679341 42679678 + 2 NA intron (NR_046174, intron 8 of 9) intron (NR_046174, intron 8 of 9) 436176 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 216-253 chr4 80618092 80618265 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 282458 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 213-284 chr8 111442140 111442344 + 2 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 65603 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 517-74 chr14 20563622 20564054 + 2 NA Intergenic PABL_B|LTR|ERV1 -2907 NM_001289110 390443 Hs.533972 NM_001001673 ENSG00000188655 RNASE9 HEL128|RAK1|h461 ribonuclease A family member 9 (inactive) protein-coding 366-396 chr7 990800 991084 + 2 NA intron (NR_156697, intron 4 of 4) intron (NR_156697, intron 4 of 4) 7761 NM_017781 54905 Hs.272795 NM_017781 ENSG00000073067 CYP2W1 - cytochrome P450 family 2 subfamily W member 1 protein-coding 397-246 chr5 25485200 25485462 + 2 NA Intergenic L1PA7|LINE|L1 294378 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 209-216 chr4 5904915 5905077 + 2 NA Intergenic MIRc|SINE|MIR -11910 NM_001014809 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 257-430 chr9 10462120 10462347 + 2 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 150769 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 292-119 chr13 38469245 38469453 + 2 NA Intergenic Intergenic -98375 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 362-295 chr4 37123506 37123786 + 2 NA Intergenic Intergenic 118345 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 305-442 chr5 92871070 92871268 + 2 NA Intergenic L1MA6|LINE|L1 700174 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 370-218 chr2 17141083 17141276 + 2 NA Intergenic Intergenic 377261 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 177-159 chr8 106189325 106189435 + 2 NA Intergenic Intergenic -80798 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 283-167 chr16 73803497 73803727 + 2 NA Intergenic L1ME4c|LINE|L1 411909 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 368-238 chr2 124050026 124050352 + 2 NA intron (NM_130773, intron 1 of 23) AluJb|SINE|Alu 24902 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 301-368 chr5 122279409 122279697 + 2 NA Intergenic Intergenic -32138 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 529-113 chr2 126860489 126860910 + 2 NA Intergenic Intergenic -38191 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 234-153 chr19 55533905 55534057 + 2 NA intron (NM_001370096, intron 2 of 3) intron (NM_001370096, intron 2 of 3) 3152 NM_001370096 646643 Hs.532676 NM_001101401 ENSG00000187550 SBK2 SGK069 SH3 domain binding kinase family member 2 protein-coding 301-352 chr5 33130422 33130634 + 2 NA Intergenic L1M3b|LINE|L1 -99207 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 542-57 chr14 56189733 56190112 + 2 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 71511 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 320-252 chr2 21613028 21613233 + 2 NA Intergenic L1MA1|LINE|L1 97522 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 292-205 chr2 32290069 32290303 + 2 NA intron (NM_032312, intron 1 of 5) intron (NM_032312, intron 1 of 5) 12282 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 290-146 chr15 94782479 94782660 + 2 NA Intergenic L1ME3A|LINE|L1 -72794 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 262-163 chr17 16618513 16618724 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 35232 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 358-20 chr1 185462589 185462788 + 2 NA Intergenic L1MA4A|LINE|L1 -127649 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 251-97 chr14 65495257 65495432 + 2 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) 24242 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 330-565 chrX 45371037 45371214 + 2 NA Intergenic L1MA3|LINE|L1 -134263 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 300-214 chr2 141744133 141744305 + 2 NA intron (NM_018557, intron 2 of 90) L1MA3|LINE|L1 387482 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 239-434 chr9 30323726 30323892 + 2 NA Intergenic Intergenic 84645 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 357-71 chr11 87509437 87509685 + 2 NA Intergenic Intergenic 209850 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 326-257 chr2 117913266 117913471 + 2 NA Intergenic Intergenic 79637 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 347-489 chr8 4868164 4868436 + 2 NA intron (NM_033225, intron 1 of 69) AluSx|SINE|Alu 126614 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 328-409 chr4 88245949 88246229 + 2 NA Intergenic L2a|LINE|L2 -14463 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 126-57 chr5 155720233 155720315 + 2 NA Intergenic L1MC3|LINE|L1 -606483 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 351-282 chr22 28236975 28237228 + 2 NA intron (NM_001145418, intron 5 of 22) L1MEf|LINE|L1 -222768 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 481-150 chr2 114761143 114761580 + 2 NA intron (NM_001321910, intron 2 of 26) LTR40a|LTR|ERVL 72187 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 586-136 chr6 138502674 138503191 + 2 NA intron (NM_020464, intron 1 of 6) intron (NM_020464, intron 1 of 6) -3438 NM_001144060 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 318-480 chr6 82652932 82653243 + 2 NA Intergenic Intergenic 288843 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 329-464 chr5 103190233 103190495 + 2 NA intron (NM_001281471, intron 30 of 32) intron (NM_001281471, intron 30 of 32) -68399 NM_033211 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 225-328 chr7 43558963 43559118 + 2 NA intron (NM_001287059, intron 27 of 27) intron (NM_001287059, intron 27 of 27) -24068 NM_004760 9263 Hs.709489 NM_004760 ENSG00000164543 STK17A DRAK1 serine/threonine kinase 17a protein-coding 405-313 chr8 20172717 20172926 + 2 NA intron (NM_003053, intron 6 of 15) intron (NM_003053, intron 6 of 15) 10315 NM_001142324 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 408-185 chr20 44951348 44951646 + 2 NA intron (NM_006809, intron 4 of 6) MLT1K|LTR|ERVL-MaLR 8900 NM_006809 10953 Hs.517066 NM_006809 ENSG00000025772 TOMM34 HTOM34P|TOM34|URCC3 translocase of outer mitochondrial membrane 34 protein-coding 460-48 chr11 75982713 75982949 + 2 NA intron (NM_003369, intron 7 of 14) L1MB8|LINE|L1 167621 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 228-7 chr1 65662778 65662995 + 2 NA Intergenic L1MA9|LINE|L1 -129624 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 401-99 chr15 48667197 48667552 + 2 NA Intergenic Intergenic -21586 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 166-77 chr3 97149704 97149829 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -289841 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 283-172 chr16 80929872 80930049 + 2 NA Intergenic Intergenic -37364 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 304-188 chr17 5664975 5665233 + 2 NA Intergenic Intergenic -80595 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 228-191 chr20 39245614 39245840 + 2 NA Intergenic Intergenic -20979 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 845-8 chr12 46169643 46170251 + 2 NA Intergenic L2a|LINE|L2 96569 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 417-317 chrX 100745082 100745445 + 2 NA Intergenic Intergenic -13142 NM_001129896 94121 Hs.592224 NM_080737 ENSG00000102362 SYTL4 SLP4 synaptotagmin like 4 protein-coding 364-287 chr3 128710028 128710333 + 2 NA Intergenic Intergenic -15956 NM_004637 7879 Hs.684374 NM_004637 ENSG00000075785 RAB7A PRO2706|RAB7 RAB7A, member RAS oncogene family protein-coding 495-274 chrX 51435814 51436152 + 2 NA Intergenic MIRb|SINE|MIR 29035 NM_203407 340602 Hs.97053 NM_203407 ENSG00000187690 EZHIP CXorf67 EZH inhibitory protein protein-coding 447-266 chr8 81128769 81129110 + 2 NA Intergenic Intergenic -16871 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 157-61 chr2 72425937 72426058 + 2 NA intron (NM_001321729, intron 18 of 22) intron (NM_001321729, intron 18 of 22) -278135 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 401-121 chr16 73328025 73328324 + 2 NA Intergenic Intergenic -58631 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 200-129 chr2 57677036 57677221 + 2 NA Intergenic Intergenic -230523 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 342-468 chr6 139549079 139549352 + 2 NA Intergenic Intergenic -74619 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 158-105 chr6 163161491 163161605 + 2 NA intron (NM_001080379, intron 4 of 4) L1ME4b|LINE|L1 30454 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 310-528 chr8 115042599 115042900 + 2 NA Intergenic L1PA7|LINE|L1 625264 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 318-477 chr6 61533742 61533948 + 2 NA Intergenic L1PA7|LINE|L1 -40285 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 463-112 chr17 60909357 60909663 + 2 NA intron (NM_001330413, intron 11 of 25) intron (NM_001330413, intron 11 of 25) 231659 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 235-119 chr15 94061016 94061157 + 2 NA intron (NR_120320, intron 2 of 8) MIR|SINE|MIR 46852 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 344-299 chr22 48544331 48544668 + 2 NA intron (NR_038917, intron 4 of 4) intron (NR_038917, intron 4 of 4) 2888 NR_038917 284933 Hs.159057 NR_038917 ENSG00000281732 LOC284933 - uncharacterized LOC284933 ncRNA 529-197 chr6 103667632 103667985 + 2 NA Intergenic Intergenic 1191738 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 403-144 chr19 29054484 29054875 + 2 NA Intergenic Intergenic 52124 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 302-148 chr15 93398092 93398266 + 2 NA Intergenic AluY|SINE|Alu 192113 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 323-394 chr5 16243623 16243913 + 2 NA Intergenic L1MA9|LINE|L1 63527 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 306-75 chr11 40442696 40442868 + 2 NA intron (NM_020929, intron 2 of 4) MIR3|SINE|MIR -149652 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 297-426 chr7 11644475 11644697 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 187612 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 487-26 chr1 182728206 182728590 + 2 NA Intergenic Intergenic 15536 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 474-70 chr12 128062375 128062804 + 2 NA Intergenic Intergenic -35423 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 282-400 chr6 62503669 62503828 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -217521 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 383-66 chr11 110913990 110914229 + 2 NA Intergenic L1M5|LINE|L1 183209 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 332-155 chr14 75642059 75642329 + 2 NA intron (NM_017791, intron 9 of 9) intron (NM_017791, intron 9 of 9) 18682 NM_007176 11161 Hs.15106 NM_007176 ENSG00000133935 ERG28 C14orf1|NET51 ergosterol biosynthesis 28 homolog protein-coding 365-67 chr11 27344886 27345188 + 2 NA intron (NM_030771, intron 3 of 5) L1ME1|LINE|L1 18178 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 603-38 chr12 127790076 127790630 + 2 NA Intergenic Intergenic -91264 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 273-211 chr2 41546841 41547087 + 2 NA Intergenic Intergenic -330591 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 765-18 chr14 46549758 46550221 + 2 NA Intergenic L2a|LINE|L2 78630 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 386-101 chr14 62471671 62471916 + 2 NA Intergenic Intergenic -331820 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 256-115 chr14 31607790 31608014 + 2 NA intron (NM_001201573, intron 2 of 8) L1MA2|LINE|L1 29986 NM_001201573 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 280-323 chr5 63241826 63242012 + 2 NA Intergenic Intergenic 663100 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 223-17 chr1 169112780 169112933 + 2 NA intron (NM_001677, intron 2 of 5) intron (NM_001677, intron 2 of 5) 6166 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 234-316 chr5 116301834 116302052 + 2 NA Intergenic Intergenic 46200 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 1119-13 chr9 72113249 72114097 + 2 NA promoter-TSS (NM_001242507) promoter-TSS (NM_001242507) -922 NM_001242507 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 417-199 chr4 57096592 57096876 + 2 NA intron (NM_001553, intron 1 of 4) Tigger19b|DNA|TcMar-Tigger -13028 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 356-370 chr4 120872485 120872697 + 2 NA intron (NM_001300824, intron 2 of 13) AluJr|SINE|Alu 50275 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 368-454 chr8 86585227 86585431 + 2 NA intron (NM_019098, intron 15 of 17) (TA)n|Simple_repeat|Simple_repeat 70894 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 235-103 chr14 53030478 53030675 + 2 NA Intergenic Intergenic -79479 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 303-462 chr8 111094849 111095105 + 2 NA Intergenic L2|LINE|L2 -67544 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 158-75 chr3 107099765 107099914 + 2 NA Intergenic LTR81C|LTR|Gypsy 140799 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 320-76 chr11 12552327 12552535 + 2 NA Intergenic MIR|SINE|MIR -121990 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 274-180 chr19 12480132 12480332 + 2 NA intron (NM_152601, intron 1 of 3) intron (NM_152601, intron 1 of 3) 4584 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 297-336 chr4 73868050 73868276 + 2 NA Intergenic Intergenic -1230 NM_001511 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 401-311 chr8 36414703 36415079 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -369483 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 365-174 chr19 52440677 52441040 + 2 NA 3' UTR (NM_001351679, exon 4 of 4) 3' UTR (NM_001351679, exon 4 of 4) 11710 NM_001351679 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 252-387 chr7 4622438 4622600 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -59776 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 184-48 chr12 118849795 118849971 + 2 NA Intergenic L1MA3|LINE|L1 -16347 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 544-67 chr14 78786753 78787172 + 2 NA intron (NR_073547, intron 8 of 20) MIR3|SINE|MIR 383243 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 498-205 chr5 3167835 3168248 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -9794 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 326-522 chr8 56465919 56466201 + 2 NA intron (NR_125813, intron 1 of 3) AluSx1|SINE|Alu -19419 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 314-227 chr17 60916321 60916575 + 2 NA intron (NM_001330413, intron 12 of 25) L1MDa|LINE|L1 238597 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 402-135 chr19 51950118 51950439 + 2 NA intron (NR_103847, intron 1 of 2) (ATCT)n|Simple_repeat|Simple_repeat 1144 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 469-252 chr6 146450013 146450293 + 2 NA Intergenic Intergenic -93680 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 333-620 chrX 65621329 65621595 + 2 NA Intergenic L1MB4|LINE|L1 -46192 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 365-261 chr3 88696013 88696291 + 2 NA Intergenic L1PA11|LINE|L1 357696 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 361-249 chr2 234611983 234612291 + 2 NA Intergenic L1ME3C|LINE|L1 -70531 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 465-272 chr7 41031638 41032046 + 2 NA Intergenic Intergenic -51903 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 317-421 chr6 93194377 93194590 + 2 NA Intergenic L3|LINE|CR1 225076 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 425-290 chr7 110824818 110825111 + 2 NA intron (NM_001350963, intron 5 of 5) L1PA5|LINE|L1 -266042 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 222-248 chr3 145077860 145078032 + 2 NA Intergenic Intergenic 991239 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 120-19 chr15 23742708 23742811 + 2 NA Intergenic L1M4|LINE|L1 -55454 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 385-399 chr9 13931631 13931935 + 2 NA intron (NR_038194, intron 1 of 2) intron (NR_038194, intron 1 of 2) 3812 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 148-97 chr8 139784184 139784315 + 2 NA intron (NM_001160372, intron 21 of 22) L1ME1|LINE|L1 -81126 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 297-275 chr21 26869595 26869831 + 2 NA Intergenic Intergenic -24304 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 339-425 chr4 134764012 134764265 + 2 NA Intergenic Intergenic 340270 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 367-253 chr20 55141653 55142006 + 2 NA Intergenic Intergenic -281214 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 424-277 chr8 90272932 90273220 + 2 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 51588 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 325-157 chr14 32709190 32709397 + 2 NA intron (NM_004274, intron 9 of 13) intron (NM_004274, intron 9 of 13) -229586 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 229-275 chr4 71418355 71418559 + 2 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 79404 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 731-10 chr10 11245736 11246200 + 2 NA intron (NM_001025076, intron 3 of 13) MIR1_Amn|SINE|MIR 80938 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 431-187 chr3 156931262 156931584 + 2 NA intron (NM_001004316, intron 5 of 12) L1ME2z|LINE|L1 105070 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 254-135 chr15 86351947 86352128 + 2 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -35069 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 297-394 chr6 28275394 28275547 + 2 NA intron (NM_001023560, intron 3 of 3) L2c|LINE|L2 -6067 NM_001184743 84547 Hs.144527 NM_032507 ENSG00000137338 PGBD1 HUCEP-4|SCAND4|dJ874C20.4 piggyBac transposable element derived 1 protein-coding 273-175 chr17 72765885 72766138 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -125539 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 481-38 chr10 67725950 67726307 + 2 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -29933 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 221-222 chr4 81836151 81836316 + 2 NA Intergenic Intergenic -364326 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 208-169 chr3 110855113 110855268 + 2 NA Intergenic Intergenic 214769 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 118-7 chr10 52380184 52380263 + 2 NA Intergenic Intergenic 65942 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 215-86 chr14 62138808 62138940 + 2 NA intron (NR_104063, intron 1 of 1) intron (NR_104063, intron 1 of 1) 1099 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 264-272 chr3 69895023 69895226 + 2 NA intron (NM_198159, intron 2 of 9) intron (NM_198159, intron 2 of 9) 28900 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 289-308 chr3 95506834 95507063 + 2 NA Intergenic Intergenic 176245 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 323-278 chr2 163551332 163551524 + 2 NA Intergenic Intergenic 184580 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 527-162 chr22 34809322 34809678 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 188416 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 476-185 chr3 179142560 179142974 + 2 NA intron (NR_125401, intron 1 of 2) L1MEf|LINE|L1 5206 NR_125401 101928739 Hs.434553 NR_125401 ENSG00000229102 LOC101928739 - uncharacterized LOC101928739 ncRNA 182-122 chr4 54637910 54638031 + 2 NA Intergenic Intergenic -19958 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 384-257 chr4 45873959 45874181 + 2 NA Intergenic L2a|LINE|L2 249984 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 603-76 chr2 1165888 1166441 + 2 NA intron (NM_018968, intron 7 of 16) intron (NM_018968, intron 7 of 16) -214772 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 317-458 chr7 84131686 84131911 + 2 NA intron (NM_006080, intron 2 of 16) (TTAT)n|Simple_repeat|Simple_repeat 62991 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 140-3 chr1 189892187 189892291 + 2 NA Intergenic Intergenic 583771 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 557-96 chr2 56529225 56529627 + 2 NA Intergenic Intergenic -343656 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 369-404 chr8 70866961 70867211 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 197747 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 488-132 chr2 44403670 44404021 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 41898 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 272-122 chr14 82748423 82748668 + 2 NA Intergenic L1ME3A|LINE|L1 105913 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 317-63 chr10 88398884 88399101 + 2 NA intron (NM_018363, intron 4 of 6) L1MB7|LINE|L1 184326 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 447-95 chr16 78647792 78648181 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 548332 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 137-66 chr4 115758525 115758601 + 2 NA Intergenic Intergenic -541162 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 346-410 chr5 165900982 165901226 + 2 NA Intergenic Intergenic 1025266 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 280-299 chr4 116784877 116785071 + 2 NA Intergenic L2c|LINE|L2 300602 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 251-143 chr18 73124340 73124556 + 2 NA Intergenic Intergenic 140050 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 178-72 chr2 223074384 223074523 + 2 NA Intergenic Intergenic 22523 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 332-337 chr3 106375276 106375526 + 2 NA Intergenic Intergenic -506000 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 240-292 chr3 113853943 113854103 + 2 NA intron (NM_017577, intron 2 of 17) L2a|LINE|L2 15235 NM_017577 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 380-201 chr2 144748829 144749091 + 2 NA intron (NR_033870, intron 1 of 4) L1ME1|LINE|L1 80993 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 270-185 chr2 80779169 80779372 + 2 NA Intergenic Intergenic 465891 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 377-86 chr12 28579253 28579571 + 2 NA Intergenic Intergenic -388674 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 308-160 chr15 61213806 61214082 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 15358 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 421-53 chr12 61172318 61172678 + 2 NA Intergenic Intergenic 1020341 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 350-326 chr3 133489825 133490126 + 2 NA intron (NR_135276, intron 1 of 4) HERVL-int|LTR|ERVL 1171 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 536-205 chr7 11622919 11623380 + 2 NA intron (NM_015204, intron 2 of 26) intron (NM_015204, intron 2 of 26) 209049 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 287-129 chr14 45440557 45440826 + 2 NA Intergenic Intergenic -187489 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 209-151 chr2 66066240 66066419 + 2 NA Intergenic Intergenic 291999 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 220-153 chr2 13643054 13643265 + 2 NA Intergenic MER61-int|LTR|ERV1 -636146 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 291-309 chr4 21027586 21027815 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -43691 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 178-66 chr2 103817326 103817436 + 2 NA Intergenic Intergenic 590951 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 223-358 chr9 8942774 8942922 + 2 NA intron (NM_002839, intron 11 of 45) L1MA3|LINE|L1 84830 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 275-243 chr3 43095585 43095758 + 2 NA intron (NM_032806, intron 1 of 1) MIRb|SINE|MIR 10408 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 765-22 chr17 19599485 19600048 + 2 NA Intergenic Intergenic 42206 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 148-5 chr1 84374974 84375080 + 2 NA intron (NR_003927, intron 2 of 6) intron (NR_003927, intron 2 of 6) 9774 NR_003927 391051 Hs.647646 NR_003927 UOX UOXP|URICASE urate oxidase (pseudogene) pseudo 378-323 chr4 151169275 151169529 + 2 NA intron (NM_001009555, intron 7 of 20) intron (NM_001009555, intron 7 of 20) 6150 NM_001128924 152503 Hs.744983 NM_001009555 ENSG00000109686 SH3D19 EBP|EVE1|Eve-1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 572-54 chr14 67680456 67680843 + 2 NA intron (NM_016026, intron 6 of 6) AluJb|SINE|Alu -6017 NM_006370 10490 Hs.741177 NM_006370 ENSG00000100568 VTI1B VTI1|VTI1-LIKE|VTI1L|VTI2|v-SNARE|vti1-rp1 vesicle transport through interaction with t-SNAREs 1B protein-coding 258-75 chr11 113055755 113055958 + 2 NA intron (NM_181351, intron 1 of 18) L1MA4|LINE|L1 -92396 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 281-81 chr12 19708523 19708701 + 2 NA Intergenic L1MB7|LINE|L1 268013 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 280-350 chr6 62897363 62897554 + 2 NA Intergenic Intergenic 422519 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 365-389 chr8 10920154 10920340 + 2 NA intron (NM_173683, intron 2 of 2) intron (NM_173683, intron 2 of 2) 80221 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 316-9 chr1 59892340 59892559 + 2 NA TTS (NR_134982) TTS (NR_134982) 34324 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 267-434 chr8 125889923 125890120 + 2 NA Intergenic L1MC3|LINE|L1 61176 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 209-223 chr4 53102203 53102336 + 2 NA intron (NM_152540, intron 5 of 8) L1MC3|LINE|L1 239952 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 384-362 chr8 27216118 27216416 + 2 NA Intergenic L1ME1|LINE|L1 42137 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 278-102 chr14 45360214 45360441 + 2 NA Intergenic L3|LINE|CR1 -107125 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 446-162 chr2 225981159 225981508 + 2 NA Intergenic L1MB7|LINE|L1 -161461 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 524-209 chr5 121119238 121119590 + 2 NA Intergenic Intergenic -203136 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 556-97 chr2 58844180 58844591 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 323632 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 258-397 chr8 101231445 101231661 + 2 NA Intergenic Intergenic -25489 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 242-242 chr3 103737082 103737286 + 2 NA Intergenic L2a|LINE|L2 -213068 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 349-39 chr1 238165768 238166081 + 2 NA Intergenic Intergenic -275002 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 316-417 chr4 188035481 188035753 + 2 NA Intergenic Intergenic 39846 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 313-182 chr16 25799078 25799293 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 107226 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 424-201 chr4 107664493 107664834 + 2 NA intron (NM_005443, intron 5 of 11) intron (NM_005443, intron 5 of 11) 55571 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 305-512 chr7 91443152 91443386 + 2 NA Intergenic Intergenic 178836 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 210-149 chr2 207801072 207801227 + 2 NA Intergenic Intergenic -31243 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 452-85 chr14 84322041 84322487 + 2 NA Intergenic L1MA4A|LINE|L1 -949668 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 290-325 chr4 149174292 149174517 + 2 NA intron (NR_125887, intron 2 of 12) intron (NR_125887, intron 2 of 12) 20109 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 308-56 chr10 46325129 46325345 + 2 NA intron (NM_001278688, intron 16 of 16) intron (NM_001278688, intron 16 of 16) 38240 NM_001278688 195977 Hs.538515 NM_001278688 ENSG00000274209 ANTXRL - ANTXR like protein-coding 404-210 chr3 31478576 31478919 + 2 NA Intergenic MIR|SINE|MIR -54178 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 152-90 chr8 78817328 78817442 + 2 NA Intergenic L1MA8|LINE|L1 -11862 NM_001199887 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 210-305 chr9 25819858 25820030 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 39888 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 375-223 chr2 153119993 153120244 + 2 NA Intergenic Intergenic 358644 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 264-147 chr15 76410114 76410339 + 2 NA intron (NR_148227, intron 27 of 32) L2|LINE|L2 73453 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 249-303 chr4 79512191 79512363 + 2 NA intron (NR_038826, intron 2 of 3) intron (NR_038826, intron 2 of 3) 19684 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 193-210 chr9 18000918 18001034 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 421910 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 327-459 chr7 61927116 61927306 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1376845 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 224-196 chr3 44227976 44228145 + 2 NA Intergenic MIRc|SINE|MIR -13826 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 231-149 chr19 58212986 58213138 + 2 NA exon (NM_001278734, exon 8 of 8) exon (NM_001278734, exon 8 of 8) -15619 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 603-61 chr17 33416727 33417148 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 116823 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 250-274 chr3 66611893 66612094 + 2 NA Intergenic Intergenic -111572 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 235-218 chr22 30192782 30192991 + 2 NA Intergenic L3|LINE|CR1 -46308 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 271-230 chr20 40143619 40143816 + 2 NA Intergenic MIRb|SINE|MIR 139256 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 301-241 chr2 210460343 210460605 + 2 NA intron (NM_001136574, intron 3 of 9) intron (NM_001136574, intron 3 of 9) 16231 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 378-41 chr1 232780365 232780616 + 2 NA Intergenic LTR105_Mam|LTR|ERVL -24402 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 450-71 chr13 42838396 42838770 + 2 NA Intergenic LTR88a|LTR|Gypsy? -26021 NR_125747 103689845 Hs.422131 NR_125747 ENSG00000271216 LINC01050 - long intergenic non-protein coding RNA 1050 ncRNA 274-84 chr11 106035473 106035624 + 2 NA Intergenic Intergenic -13261 NM_001318747 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 495-62 chr14 78749102 78749590 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 345627 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 333-494 chr6 24185779 24185977 + 2 NA intron (NM_016356, intron 8 of 9) intron (NM_016356, intron 8 of 9) 59663 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 162-11 chr1 213676055 213676164 + 2 NA Intergenic L2c|LINE|L2 -248640 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 327-462 chr7 82183116 82183316 + 2 NA intron (NM_000722, intron 3 of 38) intron (NM_000722, intron 3 of 38) 174039 NR_110076 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 562-201 chr7 34408910 34409302 + 2 NA intron (NR_033665, intron 3 of 3) FAM|SINE|Alu -249112 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 242-339 chr6 39606345 39606534 + 2 NA intron (NM_001289020, intron 6 of 21) intron (NM_001289020, intron 6 of 21) 118969 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 219-180 chr2 133066127 133066323 + 2 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 150668 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 263-113 chr14 67084190 67084367 + 2 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -105162 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 289-271 chr20 57121173 57121343 + 2 NA Intergenic Intergenic -92438 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 305-562 chr9 93688026 93688192 + 2 NA Intergenic L1M4|LINE|L1 93268 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 287-449 chrX 53900218 53900473 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 142802 NM_001184898 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 262-257 chr20 61055022 61055208 + 2 NA Intergenic Intergenic -23949 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 869-9 chr10 103224014 103224650 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -21555 NM_001143909 729020 Hs.458437 NM_001143909 ENSG00000235376 RPEL1 - ribulose-5-phosphate-3-epimerase like 1 protein-coding 404-274 chr6 62217042 62217387 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 69011 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 412-313 chr7 82605248 82605516 + 2 NA Intergenic Intergenic -161426 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 637-6 chr1 108755663 108756142 + 2 NA intron (NM_007269, intron 3 of 18) intron (NM_007269, intron 3 of 18) 9228 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 562-10 chr1 177898153 177898614 + 2 NA Intergenic Intergenic 71539 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 203-175 chr5 4040926 4041085 + 2 NA Intergenic Intergenic 445173 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 225-40 chr10 86039526 86039693 + 2 NA intron (NM_017551, intron 4 of 15) intron (NM_017551, intron 4 of 15) 225179 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 285-322 chr5 10798501 10798666 + 2 NA Intergenic L1MC5|LINE|L1 -37349 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 228-252 chr4 100017749 100017926 + 2 NA intron (NR_125923, intron 1 of 3) intron (NR_125923, intron 1 of 3) 67343 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 517-40 chr10 128171413 128171740 + 2 NA Intergenic AluSq2|SINE|Alu -45153 NM_001145966 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 432-154 chr20 24433033 24433285 + 2 NA Intergenic L1MEf|LINE|L1 -36040 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 362-479 chrX 99555206 99555449 + 2 NA Intergenic L1M1|LINE|L1 854946 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 284-173 chr18 47725549 47725733 + 2 NA Intergenic L2c|LINE|L2 205018 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 289-253 chr2 203414144 203414413 + 2 NA intron (NM_005759, intron 8 of 9) AluSz|SINE|Alu 47394 NM_001282927 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 353-94 chr11 100297175 100297365 + 2 NA intron (NM_001243270, intron 17 of 23) intron (NM_001243270, intron 17 of 23) -390018 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 532-160 chr3 27212676 27213190 + 2 NA intron (NM_152534, intron 24 of 38) MER51B|LTR|ERV1 3590 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 483-82 chr16 51744928 51745378 + 2 NA Intergenic L1MA3|LINE|L1 -17366 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 367-59 chr10 105229433 105229648 + 2 NA intron (NM_014978, intron 20 of 26) L1MC1|LINE|L1 -563324 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 256-15 chr1 84835360 84835557 + 2 NA intron (NM_012152, intron 2 of 2) L3|LINE|CR1 57748 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 340-366 chr3 90700740 90700972 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1593235 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 248-101 chr13 85848531 85848689 + 2 NA Intergenic Intergenic -49191 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 479-273 chr9 35383358 35383775 + 2 NA intron (NM_006377, intron 20 of 38) intron (NM_006377, intron 20 of 38) -23189 NR_003581 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 397-99 chr14 83294235 83294545 + 2 NA Intergenic L2a|LINE|L2 651758 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 214-303 chr7 62877738 62877860 + 2 NA Intergenic ALR/Alpha|Satellite|centr 426257 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 324-541 chr8 112872133 112872368 + 2 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 228757 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 368-266 chr20 42803776 42803987 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) 118398 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 659-11 chr10 87905060 87905635 + 2 NA intron (NM_001304718, intron 2 of 8) L1MB5|LINE|L1 41722 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 601-152 chr8 139529431 139529822 + 2 NA Intergenic Intergenic 173497 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 258-143 chr15 63024663 63024866 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -17983 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 218-13 chr1 166082929 166083127 + 2 NA intron (NR_163271, intron 1 of 2) intron (NR_163271, intron 1 of 2) 71770 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 969-21 chr7 45410549 45411325 + 2 NA Intergenic Intergenic -163203 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 457-68 chr14 55185011 55185308 + 2 NA intron (NM_001146015, intron 2 of 19) L2|LINE|L2 6426 NM_014750 9787 Hs.77695 NM_014750 ENSG00000126787 DLGAP5 DLG7|HURP DLG associated protein 5 protein-coding 136-92 chr9 3483345 3483435 + 2 NA intron (NM_001282116, intron 1 of 16) L2c|LINE|L2 6097 NM_001282117 5991 Hs.136829 NM_002919 ENSG00000080298 RFX3 - regulatory factor X3 protein-coding 310-288 chr20 21945994 21946168 + 2 NA Intergenic Intergenic -108009 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 274-322 chr5 141545986 141546219 + 2 NA intron (NM_005219, intron 17 of 27) AluSx|SINE|Alu -12209 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 267-423 chr8 89072380 89072576 + 2 NA Intergenic L1MC1|LINE|L1 685233 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 234-245 chr3 95416243 95416365 + 2 NA Intergenic L1MB3|LINE|L1 266889 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 595-169 chr8 141464612 141465114 + 2 NA intron (NR_102364, intron 18 of 26) Tigger1|DNA|TcMar-Tigger 42366 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 219-256 chr4 47915090 47915261 + 2 NA promoter-TSS (NM_001278624) promoter-TSS (NM_001278624) -508 NR_103795 152518 Hs.646325 NM_152995 ENSG00000170448 NFXL1 CDZFP|HOZFP|OZFP|URCC5 nuclear transcription factor, X-box binding like 1 protein-coding 209-83 chr13 101900207 101900376 + 2 NA intron (NM_175929, intron 1 of 4) L1MEg|LINE|L1 16354 NM_004115 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 343-42 chr10 16388721 16389031 + 2 NA Intergenic LOR1b|LTR|ERV1 -48067 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 545-41 chr11 86615865 86616364 + 2 NA intron (NM_001014811, intron 1 of 13) L1ME4c|LINE|L1 56084 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 531-132 chr2 240496290 240496736 + 2 NA intron (NM_017844, intron 11 of 13) intron (NM_017844, intron 11 of 13) -39813 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 217-370 chr8 112905129 112905307 + 2 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 261725 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 148-87 chr7 33411458 33411560 + 2 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 281945 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 225-35 chr10 43723491 43723655 + 2 NA Intergenic Intergenic 55252 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 124-27 chr14 52198697 52198761 + 2 NA Intergenic L1MEc|LINE|L1 -68969 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 299-211 chr2 85801262 85801528 + 2 NA Intergenic Charlie17a|DNA|hAT-Charlie -13735 NR_038888 284950 Hs.570227 NR_038888 LOC284950 - uncharacterized LOC284950 ncRNA 726-57 chr4 64675791 64676253 + 2 NA Intergenic HERVL-int|LTR|ERVL -266562 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 234-58 chr11 40087076 40087271 + 2 NA Intergenic Intergenic 205957 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 368-202 chr18 6437597 6437924 + 2 NA Intergenic L1M5|LINE|L1 -22501 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 213-232 chr5 53799053 53799190 + 2 NA intron (NR_147168, intron 1 of 3) intron (NR_147168, intron 1 of 3) 20561 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 212-114 chr16 22885030 22885200 + 2 NA intron (NM_006043, intron 1 of 1) AluSz6|SINE|Alu 70953 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 1006-6 chr12 38399876 38400467 + 2 NA Intergenic Intergenic 83397 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 365-418 chr8 139319688 139320026 + 2 NA Intergenic LTR105_Mam|LTR|ERVL 383266 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 533-30 chr12 1866526 1867002 + 2 NA intron (NM_172364, intron 18 of 37).2 AluJo|SINE|Alu 46199 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 347-166 chr16 62894823 62895136 + 2 NA Intergenic L1MA6|LINE|L1 -858541 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 451-259 chrX 79187571 79187966 + 2 NA Intergenic L1MB3|LINE|L1 16796 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 198-167 chr3 89030156 89030347 + 2 NA Intergenic Intergenic -77370 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 287-445 chrX 23325648 23325819 + 2 NA Intergenic Intergenic -9116 NM_173495 139411 Hs.319503 NM_173495 ENSG00000165186 PTCHD1 AUTSX4 patched domain containing 1 protein-coding 450-259 chr6 61513433 61513751 + 2 NA Intergenic ALR/Alpha|Satellite|centr -60538 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 473-143 chr2 161742175 161742508 + 2 NA intron (NM_001354443, intron 2 of 25) L1MA3|LINE|L1 117925 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 236-355 chr8 79398846 79399027 + 2 NA Intergenic Intergenic 66748 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 253-401 chr8 30337114 30337293 + 2 NA Intergenic MIRb|SINE|MIR -47298 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 194-61 chr14 78884453 78884610 + 2 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -315451 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 542-101 chr2 104265738 104266119 + 2 NA Intergenic L1MA9|LINE|L1 142404 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 336-85 chr11 22322456 22322772 + 2 NA Intergenic Intergenic -15767 NM_020346 57084 Hs.242821 NM_020346 ENSG00000091664 SLC17A6 DNPI|VGLUT2 solute carrier family 17 member 6 protein-coding 364-308 chr4 90670458 90670701 + 2 NA intron (NM_207491, intron 6 of 7) LTR16A1|LTR|ERVL 435548 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 388-382 chrX 112891276 112891523 + 2 NA Intergenic Intergenic -50568 NM_133265 154796 Hs.528051 NM_133265 ENSG00000126016 AMOT - angiomotin protein-coding 442-110 chr18 41107574 41107881 + 2 NA Intergenic L1MA5|LINE|L1 412950 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 226-107 chr15 100135731 100135915 + 2 NA intron (NM_139057, intron 10 of 21) L1ME3A|LINE|L1 206152 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 256-431 chr8 121232177 121232349 + 2 NA Intergenic Intergenic -407083 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 177-91 chr20 11934032 11934167 + 2 NA Intergenic Intergenic 16206 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 338-68 chr10 75307718 75307958 + 2 NA intron (NR_038226, intron 2 of 3) AluJr|SINE|Alu 11455 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 291-488 chr9 34321384 34321549 + 2 NA intron (NM_194313, intron 1 of 12) intron (NM_194313, intron 1 of 12) 7802 NM_194313 347240 Hs.710246 NM_194313 ENSG00000186638 KIF24 C9orf48|bA571F15.4 kinesin family member 24 protein-coding 288-5 chr1 36548235 36548428 + 2 NA Intergenic MER21B|LTR|ERVL -65017 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 308-398 chr5 130191088 130191360 + 2 NA Intergenic Intergenic 286759 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 551-63 chr15 83238877 83239394 + 2 NA Intergenic AluSx1|SINE|Alu -31312 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 333-414 chr4 134829410 134829626 + 2 NA Intergenic L1MA4A|LINE|L1 294041 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 310-399 chr5 44453343 44453583 + 2 NA Intergenic LTR49|LTR|ERV1 56819 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 553-19 chr10 54457096 54457423 + 2 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -28971 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 368-206 chr18 13168095 13168307 + 2 NA Intergenic L1PB1|LINE|L1 -50559 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 354-204 chr2 34667643 34667962 + 2 NA Intergenic MIRb|SINE|MIR -9755 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 523-237 chr5 179930064 179930393 + 2 NA Intergenic AluSq2|SINE|Alu -22331 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 380-97 chr12 58785323 58785636 + 2 NA intron (NR_126341, intron 1 of 1) MER76|LTR|ERVL -3763 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 285-289 chr3 178911592 178911792 + 2 NA Intergenic Intergenic -51287 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 286-421 chr7 52254333 52254615 + 2 NA Intergenic Intergenic -781159 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 293-136 chr15 93578551 93578811 + 2 NA Intergenic L1MEc|LINE|L1 -277879 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 139-43 chr2 81335098 81335208 + 2 NA Intergenic L1MCa|LINE|L1 131793 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 305-247 chr2 44462622 44462799 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 100763 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 578-79 chr2 7778557 7778924 + 2 NA Intergenic Intergenic 120915 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 569-148 chr5 125704911 125705276 + 2 NA Intergenic L1M4|LINE|L1 211832 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 426-113 chr18 33629187 33629505 + 2 NA intron (NM_030632, intron 2 of 11) intron (NM_030632, intron 2 of 11) 51127 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 356-306 chr22 39738016 39738319 + 2 NA Intergenic L2c|LINE|L2 155593 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 244-212 chr22 44474379 44474570 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 23759 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 223-34 chr10 49028313 49028506 + 2 NA intron (NM_001031746, intron 7 of 7) intron (NM_001031746, intron 7 of 7) -42822 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 493-260 chr6 108511332 108511685 + 2 NA intron (NR_136553, intron 7 of 8) MIR|SINE|MIR -48317 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 510-291 chr9 31494955 31495312 + 2 NA Intergenic Intergenic -113643 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 499-190 chr4 154828586 154828894 + 2 NA TTS (NM_001277171) TTS (NM_001277171) 47235 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 290-80 chr11 70941880 70942124 + 2 NA intron (NM_012309, intron 9 of 24) AluSg|SINE|Alu -69634 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 252-137 chr16 6928361 6928609 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 154676 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 278-432 chr8 126224580 126224767 + 2 NA Intergenic Intergenic -100822 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 534-107 chr2 21686967 21687384 + 2 NA TTS (NR_038837) TTS (NR_038837) 23477 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 231-148 chr19 36878311 36878472 + 2 NA 3' UTR (NM_003419, exon 3 of 3) 3' UTR (NM_003419, exon 3 of 3) 26740 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 264-455 chrX 155601695 155601924 + 2 NA intron (NM_018196, intron 1 of 7) L1MB8|LINE|L1 -10756 NM_001304990 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 310-253 chr2 122617798 122617996 + 2 NA Intergenic L1M4|LINE|L1 455584 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 295-222 chr2 117276545 117276789 + 2 NA Intergenic Intergenic -538024 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 356 chr1 5258128 5258365 + 2 NA Intergenic L1MCc|LINE|L1 603637 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 425-110 chr17 32287281 32287563 + 2 NA intron (NM_001363835, intron 3 of 7) intron (NM_001363835, intron 3 of 7) 21246 NM_001363834 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 319-130 chr13 91574754 91574953 + 2 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 176232 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 368-286 chr3 29700687 29701047 + 2 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 233289 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 370-49 chr10 62476449 62476663 + 2 NA intron (NM_199451, intron 4 of 7) intron (NM_199451, intron 4 of 7) -43892 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 288-475 chr9 110539414 110539655 + 2 NA intron (NM_153366, intron 3 of 47) MADE2|DNA|TcMar-Mariner 40207 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 387-158 chr2 16860870 16861200 + 2 NA Intergenic Intergenic -195201 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 360-10 chr1 103458953 103459243 + 2 NA intron (NM_001347930, intron 1 of 4) intron (NM_001347930, intron 1 of 4) 66413 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 350-110 chr12 127215939 127216256 + 2 NA Intergenic L1MA5A|LINE|L1 68186 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 257-239 chr20 46738193 46738341 + 2 NA Intergenic MER113|DNA|hAT-Charlie 28618 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 486-99 chr15 69894263 69894674 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 59234 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 255-283 chr4 12513343 12513539 + 2 NA Intergenic Intergenic 289990 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 694-33 chr13 54509158 54509821 + 2 NA Intergenic Intergenic -197441 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 373-429 chr9 25745032 25745296 + 2 NA Intergenic L1ME3Cz|LINE|L1 -34892 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 161-97 chr6 139306960 139307062 + 2 NA Intergenic L3|LINE|CR1 -15013 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 218-68 chr12 48885509 48885708 + 2 NA Intergenic Intergenic -18525 NM_001286957 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 418-116 chr2 81237507 81237870 + 2 NA Intergenic L2|LINE|L2 229258 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 335-286 chr2 237945240 237945475 + 2 NA Intergenic Intergenic -21588 NR_037904 100533179 Hs.471785 NR_037904 ENSG00000258984 UBE2F-SCLY - UBE2F-SCLY readthrough (NMD candidate) ncRNA 314-21 chr1 96491805 96492058 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -117806 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 300-81 chr12 7205305 7205477 + 2 NA intron (NM_001351136, intron 10 of 15) intron (NM_001351136, intron 10 of 15) 15029 NM_000319 5830 Hs.567327 NM_000319 ENSG00000139197 PEX5 PBD2A|PBD2B|PTS1-BP|PTS1R|PXR1|RCDP5 peroxisomal biogenesis factor 5 protein-coding 257-51 chr10 107024638 107024840 + 2 NA intron (NM_001206569, intron 1 of 25) L1MC5|LINE|L1 139967 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 198-66 chr14 72104275 72104423 + 2 NA intron (NM_001370288, intron 2 of 16) Charlie29a|DNA|hAT-Charlie 170822 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 341-177 chr15 95201507 95201723 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 125485 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 236-2 chr1 8934208 8934389 + 2 NA Intergenic AluJr4|SINE|Alu -11570 NM_001270502 765 Hs.100322 NM_001215 ENSG00000131686 CA6 CA-VI|GUSTIN carbonic anhydrase 6 protein-coding 249-15 chr1 98501377 98501619 + 2 NA Intergenic LTR12|LTR|ERV1 -160223 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 209-250 chr5 37614797 37614942 + 2 NA intron (NM_001345998, intron 10 of 17) HAL1|LINE|L1 219953 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 199-212 chr6 39399455 39399614 + 2 NA intron (NM_001289024, intron 2 of 9) intron (NM_001289024, intron 2 of 9) 31856 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 281-413 chr7 49420405 49420567 + 2 NA Intergenic HAL1|LINE|L1 -353152 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 321-329 chr20 16985223 16985488 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 237002 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 528-134 chr2 128941517 128942025 + 2 NA Intergenic Intergenic 77171 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 581-149 chr6 41619870 41620281 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -16943 NM_001300804 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 199-104 chr2 34832245 34832432 + 2 NA Intergenic Intergenic 154781 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 421-244 chr5 86254395 86254781 + 2 NA Intergenic Intergenic -27856 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 291-210 chr2 37638350 37638504 + 2 NA Intergenic Intergenic 33772 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 657-72 chr4 97441105 97441651 + 2 NA intron (NR_102713, intron 2 of 5) intron (NR_102713, intron 2 of 5) 74452 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 503-112 chr16 25756317 25756804 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 64601 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 249-405 chr8 46443422 46443610 + 2 NA Intergenic GSAT|Satellite|centr 174127 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 319-333 chr3 87422545 87422837 + 2 NA Intergenic Intergenic -146107 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 508-199 chr6 23315868 23316263 + 2 NA Intergenic L2c|LINE|L2 -598141 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 471-79 chr14 47453417 47453740 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -110332 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 549-214 chr8 118711306 118711797 + 2 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -89588 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 219-127 chr16 78821862 78821992 + 2 NA intron (NM_001291997, intron 7 of 7) AluJr4|SINE|Alu 722273 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 352-413 chr5 42201663 42201843 + 2 NA Intergenic Intergenic -26408 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 354-282 chr3 5511866 5512113 + 2 NA Intergenic L1PA8A|LINE|L1 -261734 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 375-452 chr9 82424101 82424433 + 2 NA Intergenic MER45C|DNA|hAT-Tip100 435495 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 343-49 chr10 44493034 44493277 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -108058 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 283-470 chr9 111532928 111533102 + 2 NA intron (NM_133464, intron 3 of 5) intron (NM_133464, intron 3 of 5) 7836 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 208-221 chr5 159791887 159792064 + 2 NA intron (NR_109891, intron 2 of 2) intron (NR_109891, intron 2 of 2) 79409 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 292-14 chr1 91041682 91041966 + 2 NA Intergenic AluSx3|SINE|Alu -19569 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 213-301 chr9 87547800 87547959 + 2 NA intron (NM_004938, intron 2 of 25) MLT2D|LTR|ERVL -5575 NR_146781 100506897 Hs.656160 NR_146781 ENSG00000236709 DAPK1-IT1 - DAPK1 intronic transcript 1 ncRNA 439-272 chr7 98103608 98104003 + 2 NA Intergenic AluSx1|SINE|Alu -3057 NM_014916 22853 Hs.444179 NM_014916 ENSG00000164715 LMTK2 AATYK2|BREK|KPI-2|KPI2|LMR2|PPP1R100|cprk|hBREK lemur tyrosine kinase 2 protein-coding 450-196 chr3 78919016 78919445 + 2 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 100229 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 219-218 chr21 27387886 27388032 + 2 NA Intergenic Intergenic -334420 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 672-91 chr5 129631351 129631950 + 2 NA intron (NM_133638, intron 10 of 22) L1MEf|LINE|L1 -116444 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 343-68 chr11 4802921 4803153 + 2 NA TTS (NM_001005177) TTS (NM_001005177) 1343 NM_001005177 119695 Hs.553563 NM_001005177 ENSG00000279270 OR52R1 OR11-22 olfactory receptor family 52 subfamily R member 1 (gene/pseudogene) protein-coding 339-287 chr2 171193118 171193340 + 2 NA intron (NM_001136554, intron 1 of 20) intron (NM_001136554, intron 1 of 20) -32336 NM_012290 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 778-40 chr20 11255818 11256427 + 2 NA Intergenic LTR33|LTR|ERVL 17261 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 477-57 chr11 43526830 43527172 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -32655 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 403-168 chr2 172914965 172915344 + 2 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) -13051 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 554-102 chr19 9471532 9472043 + 2 NA intron (NM_152476, intron 5 of 9) intron (NM_152476, intron 5 of 9) 26829 NM_152476 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 372-172 chr16 26555385 26555754 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -511358 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 1036 chr1 62378085 62378896 + 2 NA Intergenic Intergenic -57814 NM_001017416 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 359-347 chr4 11201768 11202049 + 2 NA Intergenic L1MC1|LINE|L1 -166919 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 341-214 chr19 8075008 8075284 + 2 NA exon (NM_001321431, exon 61 of 64) exon (NM_001321431, exon 61 of 64) 22384 NM_001201359 6370 Hs.310511 NM_005624 ENSG00000131142 CCL25 Ckb15|SCYA25|TECK C-C motif chemokine ligand 25 protein-coding 682-50 chr2 82485191 82485560 + 2 NA Intergenic Intergenic -371428 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 514-149 chr2 84596301 84596751 + 2 NA intron (NM_001370, intron 18 of 76) AluSq|SINE|Alu 80071 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 545-203 chr6 69752397 69752852 + 2 NA intron (NM_001367272, intron 3 of 15) intron (NM_001367272, intron 3 of 15) 43842 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 203-130 chr2 229137612 229137807 + 2 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 94383 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 365-316 chr5 37845403 37845610 + 2 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 5068 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 294-412 chr6 116741878 116742067 + 2 NA TTS (NM_002269) TTS (NM_002269) 23747 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 208-47 chr11 106008182 106008337 + 2 NA 3' UTR (NM_032424, exon 3 of 3) 3' UTR (NM_032424, exon 3 of 3) 13981 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 415-26 chr1 242507106 242507479 + 2 NA intron (NM_001320272, intron 2 of 10) Tigger12c|DNA|TcMar-Tigger 17404 NM_152666 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 661-54 chr2 207454521 207454981 + 2 NA Intergenic L1MA2|LINE|L1 -75211 NM_004379 1385 Hs.516646 NM_004379 ENSG00000118260 CREB1 CREB|CREB-1 cAMP responsive element binding protein 1 protein-coding 275-185 chr2 45181371 45181551 + 2 NA intron (NR_033831, intron 4 of 5) intron (NR_033831, intron 4 of 5) 73480 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 251-18 chr1 188214955 188215202 + 2 NA Intergenic L1MA4|LINE|L1 771450 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 624-7 chr1 169193872 169194452 + 2 NA intron (NR_104229, intron 10 of 12) intron (NR_104229, intron 10 of 12) 87472 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 443-275 chr7 26995976 26996335 + 2 NA Intergenic Intergenic 99845 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 742-71 chr7 10520018 10520563 + 2 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -182386 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 206-269 chr8 118893597 118893748 + 2 NA Intergenic L1MEg|LINE|L1 58213 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 256-93 chr12 107063974 107064129 + 2 NA intron (NM_004075, intron 1 of 12) MER5A|DNA|hAT-Charlie 29498 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 219-222 chr22 28518596 28518757 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 58807 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 497-50 chr11 116397791 116398223 + 2 NA Intergenic Intergenic -241415 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 347-225 chr2 79547989 79548273 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 24948 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 393-218 chr3 80995727 80996024 + 2 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 2007 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 337-423 chr4 186719168 186719397 + 2 NA intron (NM_005245, intron 1 of 26) intron (NM_005245, intron 1 of 26) 4574 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 264-206 chr2 98252774 98252931 + 2 NA intron (NM_001345864, intron 14 of 21) intron (NM_001345864, intron 14 of 21) -93303 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 594-171 chrX 78277402 78277913 + 2 NA intron (NM_001282186, intron 1 of 1) L1P4e|LINE|L1 49954 NM_001282187 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 262-345 chr5 82917747 82917946 + 2 NA Intergenic Intergenic -58010 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 674-59 chr3 4117952 4118417 + 2 NA Intergenic Intergenic -185120 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 388-351 chr8 117667216 117667415 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 146602 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 365-188 chr2 50674677 50674882 + 2 NA intron (NM_001330093, intron 4 of 22) L2|LINE|L2 21483 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 157-135 chr8 132729103 132729235 + 2 NA intron (NM_144649, intron 5 of 9) intron (NM_144649, intron 5 of 9) 31413 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 261-189 chr2 116499297 116499544 + 2 NA Intergenic MER68-int|LTR|ERVL 1155605 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 287-247 chr3 59962435 59962701 + 2 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 118341 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 891-40 chr8 118653953 118654682 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -32354 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 253-321 chr5 27429844 27430004 + 2 NA Intergenic Intergenic -42368 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 399-144 chr2 60062844 60063194 + 2 NA Intergenic AluJr|SINE|Alu 320017 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 605-30 chr15 35333892 35334293 + 2 NA Intergenic Intergenic 38272 NR_037507 100500904 NR_037507 ENSG00000265102 MIR3942 - microRNA 3942 ncRNA 333-542 chr7 68926904 68927109 + 2 NA Intergenic Intergenic 670618 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 188-136 chr3 115502828 115502983 + 2 NA Intergenic Intergenic -120605 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 246-366 chr7 36286163 36286334 + 2 NA intron (NM_030636, intron 5 of 7) intron (NM_030636, intron 5 of 7) 80992 NM_001199706 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 377-363 chr7 30398608 30398952 + 2 NA intron (NR_108081, intron 1 of 2) intron (NR_108081, intron 1 of 2) 7895 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 246-16 chr1 168727923 168728143 + 2 NA intron (NM_001937, intron 1 of 3) intron (NM_001937, intron 1 of 3) 1173 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 475-263 chr7 53531073 53531446 + 2 NA Intergenic L1MEc|LINE|L1 280672 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 429-214 chr4 103732741 103733094 + 2 NA Intergenic AluSx|SINE|Alu -12932 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 481-9 chr1 147883259 147883672 + 2 NA Intergenic Intergenic -19330 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 225-256 chr4 168228478 168228658 + 2 NA intron (NM_017631, intron 33 of 37) L1MEg|LINE|L1 90184 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 241-231 chr3 6584494 6584629 + 2 NA Intergenic L1MCa|LINE|L1 220888 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 178-77 chr20 56146017 56146137 + 2 NA Intergenic Intergenic -102655 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 405-307 chr7 109876862 109877125 + 2 NA Intergenic L1MA8|LINE|L1 83220 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 347-261 chr20 9484460 9484709 + 2 NA Intergenic MER87B|LTR|ERV1 -29774 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 322-403 chr5 3249536 3249800 + 2 NA Intergenic L1MC1|LINE|L1 71833 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 394-201 chr20 28815814 28816151 + 2 NA Intergenic ALR/Alpha|Satellite|centr -213317 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 699-22 chr12 51552050 51552718 + 2 NA Intergenic UCON105|Unknown|Unknown -38849 NM_014191 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 267-268 chr3 139961833 139961992 + 2 NA intron (NM_022131, intron 1 of 16) L1ME4a|LINE|L1 26727 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 235-403 chrX 45362253 45362454 + 2 NA Intergenic Intergenic -143035 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 286-367 chr5 125959666 125959944 + 2 NA Intergenic Intergenic -219772 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 229-126 chr15 63183099 63183274 + 2 NA Intergenic Intergenic -6420 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 376-306 chr5 13000779 13001076 + 2 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 31959 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 669-11 chr1 241175320 241175910 + 2 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 43343 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 460-200 chr3 89668686 89669113 + 2 NA Intergenic L1PBa|LINE|L1 561278 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 410-298 chr8 48303005 48303400 + 2 NA Intergenic Intergenic -248365 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 353-123 chr12 129244770 129244962 + 2 NA intron (NM_133448, intron 4 of 8) AluSx|SINE|Alu 36265 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 187-16 chr1 183786537 183786668 + 2 NA intron (NM_001297669, intron 3 of 18) Tigger4a|DNA|TcMar-Tigger -18518 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 421-290 chr8 35362618 35362971 + 2 NA intron (NM_080872, intron 1 of 16) MER58A|DNA|hAT-Charlie 127319 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 539-122 chr2 129497686 129498090 + 2 NA Intergenic L1MA9|LINE|L1 -223997 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 225-99 chr14 98502705 98502903 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -208809 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 322-273 chr2 150086769 150086968 + 2 NA Intergenic Intergenic 170139 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 415-239 chr6 84914531 84914856 + 2 NA Intergenic Intergenic -150095 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 268-71 chr11 94698668 94698828 + 2 NA intron (NR_135096, intron 1 of 6) L1ME2z|LINE|L1 41607 NR_135094 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 551-137 chr4 96305108 96305486 + 2 NA Intergenic Intergenic -5406 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 533-196 chr6 34444707 34445032 + 2 NA Intergenic FLAM_C|SINE|Alu -18744 NM_001202470 100529239 Hs.188882 NM_001202470 ENSG00000270800 RPS10-NUDT3 - RPS10-NUDT3 readthrough protein-coding 278-384 chr6 154046195 154046442 + 2 NA intron (NM_001285522, intron 1 of 1) intron (NM_001285522, intron 1 of 1) 6907 NR_104351 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 249-217 chr2 141992180 141992362 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 139430 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 241-211 chr2 226391886 226392049 + 2 NA Intergenic Intergenic 249173 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 313-57 chr10 105008018 105008316 + 2 NA intron (NM_014978, intron 4 of 26) L2c|LINE|L2 -341951 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 355-38 chr10 20314815 20314995 + 2 NA Intergenic MER21B|LTR|ERVL -237065 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 727-16 chr11 93572247 93572872 + 2 NA Intergenic L1MC1|LINE|L1 -29168 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 229-310 chr5 96096510 96096700 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 17467 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 244-258 chr4 59687964 59688142 + 2 NA Intergenic Intergenic 674480 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 415-55 chr12 21186506 21186801 + 2 NA intron (NM_006446, intron 7 of 14) Tigger2|DNA|TcMar-Tigger 55459 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 526-50 chr11 98300617 98300957 + 2 NA Intergenic L2a|LINE|L2 -720162 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 422-299 chr8 96079755 96080049 + 2 NA Intergenic L1MC5|LINE|L1 80904 NM_001001557 392255 Hs.492277 NM_001001557 ENSG00000156466 GDF6 BMP-13|BMP13|CDMP2|KFM|KFS|KFS1|KFSL|SGM1|SYNS4 growth differentiation factor 6 protein-coding 150-112 chr9 85299172 85299259 + 2 NA Intergenic Intergenic 442814 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 431-145 chr2 136213614 136214036 + 2 NA Intergenic L2b|LINE|L2 -95670 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 402-231 chr4 58629049 58629440 + 2 NA Intergenic Intergenic -92916 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 279-17 chr1 113093284 113093539 + 2 NA intron (NM_014813, intron 3 of 17) intron (NM_014813, intron 3 of 17) 20213 NM_014813 9860 Hs.448972 NM_014813 ENSG00000198799 LRIG2 LIG-2|LIG2|UFS2 leucine rich repeats and immunoglobulin like domains 2 protein-coding 309-335 chr3 5478458 5478678 + 2 NA Intergenic Intergenic -228313 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 307-356 chr4 127709296 127709580 + 2 NA intron (NM_015693, intron 13 of 15) intron (NM_015693, intron 13 of 15) -20962 NM_031291 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 360-356 chr5 37846573 37846789 + 2 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 6243 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 158-41 chr18 10351243 10351337 + 2 NA Intergenic Intergenic 63080 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 311-482 chr7 123503407 123503662 + 2 NA intron (NR_104245, intron 3 of 11) L1MA8|LINE|L1 29414 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 347-88 chr12 14338568 14338907 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -26895 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 385-188 chr2 152904827 152905160 + 2 NA Intergenic AluJr4|SINE|Alu 186356 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 365-149 chr16 84342401 84342642 + 2 NA Intergenic L2c|LINE|L2 -26002 NM_014861 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 323-197 chr18 27729162 27729407 + 2 NA Intergenic Intergenic 307357 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 177-65 chr17 58882217 58882353 + 2 NA intron (NM_014906, intron 1 of 6) L1ME3G|LINE|L1 126416 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 311-214 chr18 40425900 40426055 + 2 NA Intergenic Intergenic 359691 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 206-31 chr10 67044724 67044902 + 2 NA intron (NR_111909, intron 2 of 2) MIR|SINE|MIR 32547 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 313-191 chr16 80599338 80599639 + 2 NA 3' UTR (NM_152342, exon 7 of 7) 3' UTR (NM_152342, exon 7 of 7) -26680 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 173-98 chr3 196991400 196991486 + 2 NA Intergenic MIR|SINE|MIR -11463 NR_038285 100507057 Hs.666451 NR_038285 ENSG00000228109 MELTF-AS1 MFI2-AS1 MELTF antisense RNA 1 ncRNA 514-183 chr3 35207980 35208367 + 2 NA intron (NR_110817, intron 2 of 3) L1MDa|LINE|L1 185850 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 120-15 chr14 41598765 41598881 + 2 NA Intergenic Intergenic -8033 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 912-22 chr2 54241915 54242497 + 2 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 14023 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 358-338 chr4 86436754 86437057 + 2 NA intron (NM_002753, intron 1 of 13) L1M5|LINE|L1 16290 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 296-135 chr14 38820195 38820389 + 2 NA intron (NR_039982, intron 4 of 4) intron (NR_039982, intron 4 of 4) -62304 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 277-371 chr7 35472982 35473175 + 2 NA Intergenic Intergenic 159223 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 367-402 chr6 150511764 150512123 + 2 NA Intergenic L1MC5a|LINE|L1 -87942 NR_138139 57480 Hs.189781 NM_001029884 ENSG00000120278 PLEKHG1 ARHGEF41 pleckstrin homology and RhoGEF domain containing G1 protein-coding 248-189 chr2 78099384 78099570 + 2 NA intron (NR_110287, intron 3 of 5) intron (NR_110287, intron 3 of 5) 10747 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 563-178 chr7 153575160 153575560 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -163126 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 419-168 chr21 36561183 36561580 + 2 NA intron (NM_001146077, intron 1 of 2) intron (NM_001146077, intron 1 of 2) 15188 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 327-489 chr8 87081880 87082079 + 2 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 215564 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 329-138 chr13 39383979 39384237 + 2 NA intron (NM_005780, intron 2 of 3) LTR82B|LTR|ERVL 219085 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 327-18 chr1 119703325 119703599 + 2 NA Intergenic Intergenic -8472 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 206-72 chr14 98889175 98889342 + 2 NA Intergenic Intergenic 177645 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 325-84 chr10 107755593 107755804 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 313595 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 225-4 chr1 80933641 80933854 + 2 NA Intergenic Intergenic 292460 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 385-371 chr8 3825701 3826010 + 2 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) -1097404 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 264 chr1 1098024 1098198 + 2 NA intron (NM_017891, intron 1 of 9) AluSx3|SINE|Alu 17978 NM_001330306 54991 Hs.235095 NM_017891 ENSG00000131591 C1orf159 - chromosome 1 open reading frame 159 protein-coding 647-92 chr7 28310336 28310752 + 2 NA intron (NM_182899, intron 1 of 9) MIR3|SINE|MIR 11223 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 272-316 chr4 106676396 106676629 + 2 NA Intergenic Intergenic 242888 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 293-45 chr10 104455743 104455927 + 2 NA TTS (NM_001008723) TTS (NM_001008723) 24440 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 275-352 chr8 20925628 20925842 + 2 NA Intergenic AluSq2|SINE|Alu -27898 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 417-281 chr8 83181649 83181927 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -221970 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 409-258 chr6 445295 445657 + 2 NA Intergenic Intergenic 53724 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 339-460 chr5 123476987 123477247 + 2 NA Intergenic Intergenic -34982 NM_001031812 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 365-36 chr10 4602531 4602873 + 2 NA Intergenic MER49|LTR|ERV1 -53454 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 240-77 chr11 41590921 41591083 + 2 NA Intergenic L2a|LINE|L2 -123566 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 400-327 chr7 88327245 88327614 + 2 NA Intergenic Intergenic -20535 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 329-535 chr7 42166266 42166502 + 2 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 70825 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 546-62 chr13 67705704 67706198 + 2 NA Intergenic L1ME4a|LINE|L1 333564 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 520-185 chr3 55971627 55972103 + 2 NA intron (NR_132749, intron 11 of 17) intron (NR_132749, intron 11 of 17) -119271 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 220-136 chr17 79276694 79276853 + 2 NA intron (NM_001082575, intron 3 of 14) MIR|SINE|MIR 201836 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 295-305 chr3 112191938 112192132 + 2 NA intron (NM_001320531, intron 19 of 27).2 L1ME3A|LINE|L1 58612 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 375-419 chr8 126582412 126582743 + 2 NA Intergenic Intergenic -24099 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 290-16 chr1 87555293 87555576 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -183779 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 219-324 chr7 1785845 1786027 + 2 NA Intergenic L1ME3E|LINE|L1 -43626 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 613-84 chr3 120775971 120776508 + 2 NA intron (NM_005513, intron 3 of 4) intron (NM_005513, intron 3 of 4) 33495 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 266-176 chr2 67838797 67838946 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -13309 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 174-69 chr2 199936986 199937093 + 2 NA intron (NM_001039693, intron 5 of 7) intron (NM_001039693, intron 5 of 7) -18278 NM_024520 79568 Hs.154494 NM_024520 ENSG00000162972 MAIP1 C2orf47 matrix AAA peptidase interacting protein 1 protein-coding 346-230 chr2 21476624 21476818 + 2 NA Intergenic LTR42|LTR|ERVL 233931 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 239-188 chr2 138068398 138068547 + 2 NA Intergenic L2a|LINE|L2 -33412 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 248-19 chr1 179591039 179591179 + 2 NA promoter-TSS (NM_173533) promoter-TSS (NM_173533) -504 NM_001349923 163589 Hs.197354 NM_173533 ENSG00000162782 TDRD5 TUDOR3 tudor domain containing 5 protein-coding 384-274 chr4 123043856 123044119 + 2 NA intron (NM_001345856, intron 11 of 15) HSMAR2|DNA|TcMar-Mariner 120909 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 248-272 chr4 33697436 33697570 + 2 NA Intergenic Intergenic 342390 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 303-131 chr14 82054285 82054467 + 2 NA Intergenic MIRb|SINE|MIR -311238 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 493-144 chr2 66175755 66176021 + 2 NA Intergenic MIRb|SINE|MIR 182440 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 176-107 chr5 83956909 83957042 + 2 NA intron (NM_001278642, intron 9 of 9) intron (NM_001278642, intron 9 of 9) -236120 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 145 chr1 10287070 10287176 + 2 NA intron (NM_001365953, intron 13 of 20) intron (NM_001365953, intron 13 of 20) -11843 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 228-97 chr14 61146981 61147169 + 2 NA Intergenic Intergenic 134263 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 438-79 chr15 79147460 79147837 + 2 NA Intergenic L1MA4A|LINE|L1 -56868 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 507-224 chr6 150389956 150390441 + 2 NA intron (NM_001164695, intron 2 of 5) intron (NM_001164695, intron 2 of 5) 21186 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 244-110 chr15 72148786 72148981 + 2 NA Intergenic LTR85c|LTR|Gypsy? 30480 NM_145204 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 228-387 chrX 124769792 124769951 + 2 NA intron (NM_014253, intron 3 of 30) intron (NM_014253, intron 3 of 30) 193946 NM_001163278 10178 Hs.23796 NM_014253 ENSG00000009694 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1|ten-1 teneurin transmembrane protein 1 protein-coding 328-361 chr3 110699578 110699816 + 2 NA Intergenic Intergenic 370262 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 350-133 chr14 54940616 54940958 + 2 NA 3' UTR (NM_001008396, exon 25 of 25) 3' UTR (NM_001008396, exon 25 of 25) -37961 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 323-274 chr2 143879274 143879462 + 2 NA Intergenic AluSc8|SINE|Alu -57699 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 313-540 chr8 130735194 130735469 + 2 NA Intergenic L1PA16|LINE|L1 -291657 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 498-105 chr17 53998622 53998938 + 2 NA Intergenic Intergenic 175853 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 252-45 chr10 59514606 59514805 + 2 NA Intergenic MER4CL34|LTR|ERV1 -151524 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 352-443 chr6 18348249 18348426 + 2 NA Intergenic Intergenic -39013 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 231-120 chr16 73983490 73983672 + 2 NA Intergenic L1M4a2|LINE|L1 231940 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 359-252 chr2 151941889 151942158 + 2 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 30029 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 383-293 chr4 104613675 104613959 + 2 NA intron (NR_125926, intron 1 of 9) L1MA2|LINE|L1 -118923 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 159-24 chr12 113987784 113987927 + 2 NA Intergenic Intergenic -21530 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 493-25 chr10 24246667 24247060 + 2 NA intron (NM_019590, intron 2 of 20) AluSz6|SINE|Alu -28822 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 396-327 chr7 28642438 28642769 + 2 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -43530 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 547-195 chr5 153506369 153506790 + 2 NA intron (NM_001258019, intron 2 of 14) intron (NM_001258019, intron 2 of 14) 14407 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 228-44 chr10 86571029 86571230 + 2 NA Intergenic MER4A1|LTR|ERV1 -49337 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 357-16 chr1 159811957 159812179 + 2 NA intron (NM_001004310, intron 6 of 9) intron (NM_001004310, intron 6 of 9) 9708 NM_001004310 343413 Hs.196955 NM_001004310 ENSG00000181036 FCRL6 FcRH6 Fc receptor like 6 protein-coding 356-165 chr15 62132414 62132614 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 32771 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 735-14 chr12 22548362 22549058 + 2 NA Intergenic (AAC)n|Simple_repeat|Simple_repeat -4164 NM_001286173 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 431-102 chr17 14977338 14977672 + 2 NA Intergenic L1MC3|LINE|L1 -37300 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 340-415 chr4 108333682 108333916 + 2 NA Intergenic Intergenic 161679 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 376-411 chr8 124894896 124895154 + 2 NA Intergenic L1ME3B|LINE|L1 -46983 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 230-120 chr14 83855150 83855302 + 2 NA Intergenic L1MCc|LINE|L1 1212594 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 311-70 chr10 106735871 106736069 + 2 NA intron (NM_001206569, intron 5 of 25) intron (NM_001206569, intron 5 of 25) 428736 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 338-344 chr3 89428175 89428438 + 2 NA intron (NM_005233, intron 11 of 16) MIRb|SINE|MIR 320685 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 314-362 chr3 13184346 13184630 + 2 NA Intergenic L1MC|LINE|L1 -111059 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 586-6 chr1 58310321 58310677 + 2 NA Intergenic Intergenic -59952 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 366-433 chr8 55878353 55878632 + 2 NA Intergenic Intergenic -1343 NM_001111097 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 274-80 chr11 83121120 83121311 + 2 NA Intergenic Intergenic -35916 NM_015885 51585 Hs.128959 NM_015885 ENSG00000165494 PCF11 - PCF11 cleavage and polyadenylation factor subunit protein-coding 244-376 chr8 113692830 113693046 + 2 NA Intergenic L1P4|LINE|L1 -255999 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 403-159 chr2 102133295 102133632 + 2 NA intron (NM_001320980, intron 1 of 11) L1MEc|LINE|L1 -8328 NM_001320981 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 332-236 chr2 4685559 4685852 + 2 NA Intergenic HAL1b|LINE|L1 -29483 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 227-372 chr8 83936454 83936603 + 2 NA Intergenic Intergenic -246259 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 349-264 chr2 103372739 103372964 + 2 NA Intergenic Intergenic -388422 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 537-159 chr3 99078183 99078667 + 2 NA Intergenic L1ME1|LINE|L1 -176730 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 395-100 chr14 87383435 87383768 + 2 NA Intergenic Intergenic 271693 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 273-50 chr10 52422502 52422675 + 2 NA Intergenic Intergenic 32684 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 325-325 chr21 45240979 45241146 + 2 NA intron (NR_135279, intron 1 of 2) L1M1|LINE|L1 6722 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 168-46 chr19 11754220 11754358 + 2 NA Intergenic L1M3|LINE|L1 -12711 NM_152355 126068 Hs.675132 NM_152355 ENSG00000197044 ZNF441 - zinc finger protein 441 protein-coding 311-423 chr5 144437731 144437927 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 232438 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 318-293 chr2 164515814 164516118 + 2 NA intron (NM_004490, intron 6 of 13) L1PB1|LINE|L1 52529 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 267-28 chr1 184874778 184875030 + 2 NA intron (NM_052966, intron 5 of 13) L1ME3D|LINE|L1 99604 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 374-334 chr6 35870085 35870274 + 2 NA intron (NM_003137, intron 10 of 15) intron (NM_003137, intron 10 of 15) 50919 NM_003137 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 640-101 chr4 148102020 148102340 + 2 NA intron (NM_000901, intron 8 of 8) L2b|LINE|L2 319585 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 536-48 chr11 54880953 54881418 + 2 NA Intergenic ALR/Alpha|Satellite|centr 174353 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 312-444 chr6 9045857 9046020 + 2 NA Intergenic Intergenic 393729 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 348-337 chr4 10267324 10267515 + 2 NA Intergenic Intergenic -150620 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 257-306 chr4 116117490 116117707 + 2 NA Intergenic L1MB3|LINE|L1 -182127 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 325-401 chr4 92467079 92467316 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 162798 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 314-524 chr7 25664147 25664386 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) -1126 NR_157823 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 379-227 chr3 177901391 177901675 + 2 NA Intergenic L1M1|LINE|L1 84668 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 235-133 chr17 5983684 5983852 + 2 NA Intergenic Intergenic -86846 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 145-83 chr8 40795011 40795112 + 2 NA intron (NM_024645, intron 2 of 6) intron (NM_024645, intron 2 of 6) 102765 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 255-184 chr2 7518263 7518436 + 2 NA Intergenic Intergenic 97088 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 368-18 chr1 97860558 97860863 + 2 NA intron (NM_000110, intron 2 of 22) intron (NM_000110, intron 2 of 22) 60349 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 336-13 chr1 49166034 49166234 + 2 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -91277 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 232-392 chr8 136226885 136227050 + 2 NA Intergenic MIRb|SINE|MIR -303831 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 161-9 chr10 54977522 54977655 + 2 NA intron (NM_001354404, intron 3 of 34) MER41B|LTR|ERV1 -176297 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 235-347 chr8 50734963 50735180 + 2 NA intron (NM_001287814, intron 16 of 16) L1MB4|LINE|L1 570940 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 318-391 chr4 41338968 41339188 + 2 NA Intergenic MIRb|SINE|MIR -20529 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 577-44 chr11 96252663 96253237 + 2 NA intron (NM_032427, intron 1 of 4) MIR|SINE|MIR -88488 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 245-88 chr11 117039404 117039593 + 2 NA intron (NM_001366687, intron 1 of 4) intron (NM_001366687, intron 1 of 4) 58930 NM_001366686 23387 Hs.167451 NM_025164 ENSG00000160584 SIK3 L19|QSK|SEMDK|SIK-3 SIK family kinase 3 protein-coding 266-353 chr5 166215654 166215866 + 2 NA Intergenic Intergenic 710610 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 274-253 chr22 49073931 49074124 + 2 NA Intergenic Intergenic 207257 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 272-433 chr8 10009075 10009260 + 2 NA Intergenic Intergenic -45125 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 262-180 chr18 13768909 13769162 + 2 NA Intergenic AluY|SINE|Alu 42362 NM_001308263 8731 Hs.592347 NM_003799 ENSG00000101654 RNMT CMT1|CMT1c|MET|Met|RG7MT1|cm1p|hCMT1|hMet RNA guanine-7 methyltransferase protein-coding 544-203 chr7 3330070 3330525 + 2 NA intron (NM_152744, intron 1 of 44) L1MB8|LINE|L1 29045 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 604-92 chr2 184518824 184519229 + 2 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -79503 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 262-30 chr1 236375066 236375267 + 2 NA Intergenic L1MCa|LINE|L1 -19120 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 553-73 chr16 6903800 6904309 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 130245 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 375-396 chr8 4196957 4197205 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 797833 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 344-386 chr5 59579157 59579379 + 2 NA intron (NM_001349242, intron 1 of 16) L2c|LINE|L2 7230 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 214-132 chr17 65979561 65979772 + 2 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -153123 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 602-28 chr13 94581309 94581896 + 2 NA intron (NM_001304430, intron 5 of 11) L2|LINE|L2 14550 NR_130731 23483 Hs.12393 NM_014305 ENSG00000088451 TGDS CATMANS|SDR2E1|TDPGD TDP-glucose 4,6-dehydratase protein-coding 280-245 chr3 1586089 1586322 + 2 NA Intergenic L1PA15|LINE|L1 493181 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 336-221 chr18 5080921 5081159 + 2 NA promoter-TSS (NR_146900) promoter-TSS (NR_146900) -142 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 311-379 chr4 75597808 75598041 + 2 NA intron (NM_003948, intron 8 of 11) intron (NM_003948, intron 8 of 11) 32604 NM_001330724 8999 Hs.591698 NM_003948 ENSG00000138769 CDKL2 KKIAMRE|P56 cyclin dependent kinase like 2 protein-coding 187-88 chr2 184304592 184304722 + 2 NA Intergenic Intergenic -74318 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 133-7 chr10 56460893 56460979 + 2 NA Intergenic Intergenic -99663 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 334-435 chr5 126096777 126097106 + 2 NA Intergenic Intergenic -82636 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 574-141 chr5 93475675 93476038 + 2 NA intron (NR_021491, intron 4 of 5) intron (NR_021491, intron 4 of 5) 95487 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 341-327 chr3 28431186 28431486 + 2 NA intron (NM_001040432, intron 3 of 9) MLT1B|LTR|ERVL-MaLR 82187 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 521-136 chr2 234111717 234112164 + 2 NA Intergenic L1MEc|LINE|L1 61238 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 619-84 chr22 48303245 48303738 + 2 NA Intergenic Intergenic 29127 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 256-229 chr2 227563531 227563756 + 2 NA Intergenic Intergenic 55012 NR_149019 729968 Hs.689550 NR_149019 LOC729968 - spore coat protein SP96 ncRNA 431-196 chr4 60076441 60076769 + 2 NA Intergenic Intergenic -846014 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 353-552 chr9 27705936 27706281 + 2 NA Intergenic Intergenic -132242 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 329-490 chr6 61264244 61264497 + 2 NA Intergenic L1PA4|LINE|L1 -309760 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 209-249 chr5 28542459 28542641 + 2 NA Intergenic Intergenic -254885 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 595-96 chr2 189509757 189510172 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 68490 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 338-3 chr1 40488469 40488654 + 2 NA intron (NM_001320178, intron 3 of 5) L2a|LINE|L2 11271 NM_198494 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 534-191 chr5 20317176 20317640 + 2 NA intron (NR_146519, intron 1 of 1) intron (NR_146519, intron 1 of 1) 11857 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 428-143 chr2 187048365 187048765 + 2 NA Intergenic L1PA17|LINE|L1 -199395 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 347-111 chr13 74744667 74744926 + 2 NA Intergenic Intergenic 191953 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 413-141 chr2 78757189 78757513 + 2 NA Intergenic MER67D|LTR|ERV1 211820 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 227-360 chr7 145867100 145867269 + 2 NA Intergenic L1M2|LINE|L1 -907087 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 492-57 chr12 16889443 16889776 + 2 NA Intergenic L1MA5A|LINE|L1 -99138 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 149-36 chr16 4968512 4968635 + 2 NA intron (NM_014692, intron 2 of 15) AluJr|SINE|Alu 10243 NM_014692 9717 Hs.512856 NM_014692 ENSG00000103184 SEC14L5 PRELID4B SEC14 like lipid binding 5 protein-coding 207-101 chr16 83325271 83325464 + 2 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -182979 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 260-280 chr3 107130115 107130289 + 2 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 110436 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 369-69 chr11 104905858 104906146 + 2 NA intron (NR_034079, intron 2 of 4) MIR3|SINE|MIR -7332 NR_034066 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 553-2 chr1 30622437 30622847 + 2 NA Intergenic Intergenic -96130 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 269-281 chr4 84465060 84465310 + 2 NA Intergenic L1MEb|LINE|L1 33049 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 365-52 chr10 71117561 71117864 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -94858 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 519-103 chr2 48990474 48990971 + 2 NA intron (NM_000145, intron 4 of 9) intron (NM_000145, intron 4 of 9) -68881 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 287-386 chr7 88295341 88295520 + 2 NA intron (NM_001205315, intron 1 of 5) MER5B|DNA|hAT-Charlie 11464 NM_024636 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 445-39 chr11 108224544 108224912 + 2 NA intron (NM_001351836, intron 1 of 3) L2a|LINE|L2 1199 NM_001351836 472 Hs.367437 NM_000051 ENSG00000149311 ATM AT1|ATA|ATC|ATD|ATDC|ATE|TEL1|TELO1 ATM serine/threonine kinase protein-coding 309-303 chr20 41193322 41193510 + 2 NA intron (NM_015035, intron 3 of 3) L1M4|LINE|L1 24393 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 373-220 chr2 170906771 170907107 + 2 NA Intergenic Intergenic -21538 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 176-56 chr2 63139007 63139116 + 2 NA intron (NR_148704, intron 18 of 18) L1PB1|LINE|L1 -19519 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 459-234 chr5 36971058 36971405 + 2 NA intron (NM_015384, intron 7 of 45) intron (NM_015384, intron 7 of 45) 94462 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 627-81 chr4 99037574 99037943 + 2 NA intron (NM_015143, intron 4 of 10) L1ME4b|LINE|L1 40371 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 391-215 chr20 59205979 59206204 + 2 NA intron (NM_178457, intron 2 of 4) Charlie7a|DNA|hAT-Charlie 15071 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 487-31 chr1 239803767 239804090 + 2 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -84809 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 425-270 chr6 156274033 156274316 + 2 NA Intergenic MLT2A2|LTR|ERVL -104576 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 335-145 chr13 94326545 94326821 + 2 NA intron (NM_005708, intron 6 of 8) intron (NM_005708, intron 6 of 8) -138692 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 257-20 chr1 157828761 157828904 + 2 NA intron (NM_001347698, intron 5 of 5) L2|LINE|L2 -8712 NM_001159398 115350 Hs.656112 NM_052938 ENSG00000163534 FCRL1 CD307a|FCRH1|IFGP1|IRTA5 Fc receptor like 1 protein-coding 447-93 chr16 76332026 76332296 + 2 NA intron (NM_001322191, intron 2 of 22) L1M4a1|LINE|L1 22309 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 276-23 chr1 181338546 181338741 + 2 NA Intergenic L1MA9|LINE|L1 102255 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 229-424 chrX 91109172 91109357 + 2 NA Intergenic MER61F|LTR|ERV1 -325575 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 378-222 chr2 50395211 50395485 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -47592 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 346-465 chr7 53245069 53245339 + 2 NA Intergenic AluSx3|SINE|Alu 209571 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 396-169 chr2 77640798 77641016 + 2 NA Intergenic L1MA4|LINE|L1 -118474 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 176-65 chr2 192286413 192286525 + 2 NA Intergenic Intergenic -91536 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 267-106 chr14 47018879 47019036 + 2 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 324289 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 259-272 chr3 191231054 191231290 + 2 NA intron (NR_133663, intron 1 of 5) intron (NR_133663, intron 1 of 5) 3433 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 360-431 chr7 48646224 48646499 + 2 NA 3' UTR (NM_152701, exon 62 of 62) 3' UTR (NM_152701, exon 62 of 62) -278186 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 325-193 chr16 14018298 14018592 + 2 NA TTS (NR_110915) TTS (NR_110915) -2427 NR_110909 101927311 NR_110909 ENSG00000262097 LINC02185 - long intergenic non-protein coding RNA 2185 ncRNA 117-9 chr13 22521262 22521371 + 2 NA Intergenic L1ME3|LINE|L1 311031 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 668-46 chr2 57928170 57928753 + 2 NA intron (NM_001288838, intron 1 of 15) L1MA3|LINE|L1 20810 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 349-507 chr8 114364378 114364623 + 2 NA Intergenic L1M1|LINE|L1 -927561 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 366-24 chr1 166747213 166747432 + 2 NA Intergenic Intergenic -92153 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 334-135 chr13 106167962 106168286 + 2 NA Intergenic L2b|LINE|L2 -208440 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 233-63 chr11 83989187 83989360 + 2 NA intron (NM_001142699, intron 11 of 27) intron (NM_001142699, intron 11 of 27) 284007 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 556-88 chr18 23674880 23675286 + 2 NA Intergenic Intergenic -12172 NM_173505 147463 Hs.355689 NM_173505 ENSG00000154065 ANKRD29 - ankyrin repeat domain 29 protein-coding 282-255 chr2 232801007 232801284 + 2 NA intron (NM_015575, intron 16 of 30) AluSz6|SINE|Alu -24580 NM_001172417 3769 Hs.467338 NM_002242 ENSG00000115474 KCNJ13 KIR1.4|KIR7.1|LCA16|SVD potassium voltage-gated channel subfamily J member 13 protein-coding 205-35 chr10 59667167 59667312 + 2 NA intron (NM_194298, intron 3 of 5) Charlie1|DNA|hAT-Charlie 42652 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 234-282 chr4 113326986 113327169 + 2 NA intron (NM_001354272, intron 29 of 45) intron (NM_001354272, intron 29 of 45) 34238 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 300-495 chrUn_KI270442v1 40044 40283 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 224-286 chr6 142490349 142490544 + 2 NA Intergenic Intergenic 147390 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 510-77 chr14 75269775 75270243 + 2 NA Intergenic AluSx1|SINE|Alu -8819 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 305-492 chr7 4424815 4424998 + 2 NA Intergenic AluY|SINE|Alu -257389 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 446-81 chr12 86158093 86158415 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) 98137 NR_147093 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 665-44 chr16 80840292 80840799 + 2 NA intron (NR_131948, intron 1 of 2) intron (NR_131948, intron 1 of 2) -35947 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 306-162 chr15 47503054 47503340 + 2 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -214308 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 310-272 chr2 175540993 175541161 + 2 NA Intergenic Intergenic -359367 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 429-2 chr1 49163034 49163459 + 2 NA intron (NM_001323575, intron 4 of 12) L2c|LINE|L2 -94165 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 271-394 chr6 152605460 152605628 + 2 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 31307 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 315-373 chr5 35412422 35412579 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -182013 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 338-372 chr4 32478011 32478338 + 2 NA Intergenic Intergenic 127136 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 486-303 chr8 140158805 140159189 + 2 NA intron (NM_001160372, intron 17 of 22) L2a|LINE|L2 -58462 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 314-259 chr2 4721946 4722148 + 2 NA Intergenic L1MD2|LINE|L1 -65825 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 326-78 chr10 75980292 75980528 + 2 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 197649 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 352-464 chr6 86117197 86117384 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -438557 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 517-54 chr12 14520524 14520996 + 2 NA intron (NM_024829, intron 6 of 10) L1MA6|LINE|L1 -46972 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 349-466 chr6 160179929 160180155 + 2 NA Intergenic Intergenic 58211 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 310-158 chr15 67558899 67559165 + 2 NA intron (NM_001206804, intron 2 of 21) intron (NM_001206804, intron 2 of 21) 9938 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 568-9 chr10 16259368 16259714 + 2 NA Intergenic AluJb|SINE|Alu -177402 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 361-21 chr1 181406069 181406344 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -77311 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 277-404 chr8 54386459 54386607 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 55847 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 521-15 chr1 209126759 209127178 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 154514 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 495-97 chr18 74390662 74391000 + 2 NA Intergenic Intergenic -18617 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 359-185 chr17 60744832 60745075 + 2 NA intron (NM_001330413, intron 5 of 25) intron (NM_001330413, intron 5 of 25) 67102 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 221-103 chr16 52025697 52025843 + 2 NA TTS (NM_001242473) TTS (NM_001242473) 48165 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 248-432 chr9 79431147 79431339 + 2 NA Intergenic Intergenic -140530 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 176-49 chr18 45513647 45513802 + 2 NA intron (NM_001371319, intron 5 of 23) intron (NM_001371319, intron 5 of 23) -6688 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 178-3 chr1 60646353 60646487 + 2 NA Intergenic L1M2|LINE|L1 -23735 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 301-289 chr3 143035550 143035835 + 2 NA intron (NM_001080415, intron 19 of 27) intron (NM_001080415, intron 19 of 27) 34122 NM_001080415 23350 Hs.596572 NM_001080415 ENSG00000163714 U2SURP SR140|fSAPa U2 snRNP associated SURP domain containing protein-coding 261-302 chr5 9367868 9368063 + 2 NA intron (NM_003966, intron 3 of 22) MSTB|LTR|ERVL-MaLR -143368 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 306-60 chr10 83031952 83032253 + 2 NA Intergenic (TATAA)n|Simple_repeat|Simple_repeat 644987 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 271-128 chr14 48182154 48182352 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -387239 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 521-210 chr6 10137289 10137688 + 2 NA Intergenic LTR40a|LTR|ERVL -267014 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 724 chr1 65585389 65585967 + 2 NA intron (NM_001003679, intron 5 of 19) intron (NM_001003679, intron 5 of 19) 59989 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 261-342 chr7 8282317 8282508 + 2 NA intron (NR_125740, intron 3 of 5) ERVL-E-int|LTR|ERVL -19800 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 575-212 chr9 72460879 72461327 + 2 NA Intergenic Intergenic -60698 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 246-23 chr1 213375073 213375266 + 2 NA Intergenic Intergenic 323928 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 234-217 chr20 60790652 60790812 + 2 NA Intergenic Intergenic 226170 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 355-329 chr3 95454870 95455159 + 2 NA Intergenic Intergenic 228179 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 407-123 chr19 6165452 6165739 + 2 NA intron (NM_030924, intron 6 of 14) MIR|SINE|MIR 29928 NM_001289178 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 525-75 chr15 27057587 27057960 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 86592 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 221-283 chr7 55643881 55644071 + 2 NA Intergenic Intergenic 44056 NR_027340 360132 Hs.446691 NM_182827 ENSG00000176826 FKBP9P1 FKBP9L FKBP prolyl isomerase 9 pseudogene 1 pseudo 323-543 chr8 76346485 76346683 + 2 NA Intergenic Intergenic -60070 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 488-118 chr19 36999714 37000052 + 2 NA Intergenic AluSz|SINE|Alu -78339 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 332-232 chr19 43454095 43454327 + 2 NA Intergenic Intergenic 11397 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 581-113 chr4 53356056 53356411 + 2 NA intron (NM_152540, intron 1 of 8) MLT1F1|LTR|ERVL-MaLR 9828 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 338-235 chr19 33937189 33937414 + 2 NA Intergenic Intergenic 140431 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 495-230 chr7 14924259 14924584 + 2 NA intron (NM_001350717, intron 1 of 24) L1MEd|LINE|L1 -20765 NM_001350705 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 225-216 chr3 103607395 103607553 + 2 NA Intergenic L1M2b|LINE|L1 -83358 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 447-214 chr5 52066860 52067303 + 2 NA Intergenic Intergenic 59050 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 534-29 chr10 43586732 43587205 + 2 NA Intergenic HERVK9-int|LTR|ERVK -12350 NM_001099284 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 195-55 chr12 118809943 118810053 + 2 NA Intergenic Intergenic 23538 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 394-206 chr22 43817043 43817329 + 2 NA Intergenic Intergenic -4881 NM_022785 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 260-133 chr14 71301300 71301513 + 2 NA Intergenic Intergenic -19070 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 372-497 chr8 127821350 127821643 + 2 NA intron (NR_003367, intron 1 of 8) MER33|DNA|hAT-Charlie 25534 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 506-190 chr3 142795569 142796018 + 2 NA intron (NM_001251845, intron 9 of 12) intron (NM_001251845, intron 9 of 12) 71369 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 296-276 chr21 22332898 22333077 + 2 NA Intergenic Intergenic 234370 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 267-90 chr12 97775619 97775798 + 2 NA Intergenic L1M5|LINE|L1 -19191 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 299-364 chr5 44066268 44066554 + 2 NA Intergenic Intergenic -322321 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 393-289 chr5 143329252 143329580 + 2 NA intron (NR_157096, intron 1 of 7) MIRc|SINE|MIR 73867 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 162-79 chr3 21853370 21853485 + 2 NA Intergenic Intergenic -102217 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 309-473 chr6 53783082 53783270 + 2 NA Intergenic L1MA5A|LINE|L1 -11829 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 375-272 chr3 147554063 147554275 + 2 NA Intergenic MIRb|SINE|MIR 132842 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 154-48 chr2 51378712 51378827 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 346168 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 667-122 chr8 137927498 137928018 + 2 NA intron (NR_161374, intron 2 of 7) L2a|LINE|L2 155787 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 217-94 chr12 117345582 117345750 + 2 NA intron (NM_000620, intron 1 of 28) intron (NM_000620, intron 1 of 28) 15960 NM_000620 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 279-16 chr1 112188773 112189044 + 2 NA Intergenic Intergenic 198372 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 325-287 chr2 151072794 151073041 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 188946 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 508-261 chr9 103148760 103149187 + 2 NA intron (NR_121578, intron 8 of 9) L1M1|LINE|L1 153640 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 340-99 chr12 15822300 15822612 + 2 NA Intergenic L2c|LINE|L2 -33068 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 482-169 chr3 105111001 105111325 + 2 NA Intergenic Intergenic -255550 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 375-395 chr7 156367304 156367560 + 2 NA Intergenic Intergenic 78156 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 332-9 chr1 71680400 71680698 + 2 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 156463 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 492-220 chr5 127024904 127025197 + 2 NA intron (NM_178450, intron 1 of 4) intron (NM_178450, intron 1 of 4) 5508 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 311-140 chr14 66922360 66922535 + 2 NA intron (NM_001024218, intron 6 of 21) intron (NM_001024218, intron 6 of 21) -266993 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 196-21 chr1 190736302 190736489 + 2 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 111505 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 247-44 chr10 81132496 81132739 + 2 NA Intergenic Intergenic 482820 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 116-49 chr8 124659183 124659248 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 69258 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 290-468 chr8 132684170 132684428 + 2 NA Intergenic MER77B|LTR|ERVL -8754 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 332-478 chr7 38097633 38097837 + 2 NA Intergenic Intergenic -80510 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 353-158 chr15 53951752 53952010 + 2 NA Intergenic L3b|LINE|CR1 -26560 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 431-133 chr2 61815936 61816218 + 2 NA Intergenic Intergenic 37983 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 400-270 chr4 182271418 182271735 + 2 NA intron (NM_001080477, intron 1 of 27) intron (NM_001080477, intron 1 of 27) 28174 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 309-31 chr1 222533950 222534179 + 2 NA intron (NM_024746, intron 5 of 8) intron (NM_024746, intron 5 of 8) 14040 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 281-89 chr12 59507374 59507564 + 2 NA Intergenic L2a|LINE|L2 -88560 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 348-289 chr3 36179849 36180146 + 2 NA Intergenic MIR3|SINE|MIR -200490 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 382-106 chr14 47298080 47298329 + 2 NA intron (NM_001113498, intron 2 of 16) MIR|SINE|MIR 45042 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 372-74 chr11 78130798 78131084 + 2 NA intron (NM_001007027, intron 1 of 13) HAL1ME|LINE|L1 8685 NM_024079 79053 Hs.503368 NM_024079 ENSG00000159063 ALG8 CDG1H|PCLD3 ALG8 alpha-1,3-glucosyltransferase protein-coding 243-481 chr9 106291690 106291873 + 2 NA Intergenic Intergenic -309147 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 282-116 chr13 68834018 68834190 + 2 NA Intergenic Intergenic 51221 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 236-100 chr13 32405542 32405733 + 2 NA intron (NR_148477, intron 2 of 3) intron (NR_148477, intron 2 of 3) 22493 NM_001353630 90634 Hs.732118 NM_052818 ENSG00000139597 N4BP2L1 CG018 NEDD4 binding protein 2 like 1 protein-coding 510-18 chr1 208487248 208487610 + 2 NA Intergenic L1ME1|LINE|L1 -241259 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 321-469 chr5 86611067 86611341 + 2 NA Intergenic L1PB3|LINE|L1 -6737 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 355-405 chr5 98411551 98411884 + 2 NA Intergenic Intergenic -250478 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 323-336 chr3 96358367 96358597 + 2 NA Intergenic L1M2|LINE|L1 -1482 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 359-274 chr20 4312854 4313161 + 2 NA Intergenic L1MDa|LINE|L1 -63720 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 286-212 chr2 113991225 113991454 + 2 NA intron (NR_148508, intron 1 of 1) L2a|LINE|L2 -11355 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 319-516 chr8 10465149 10465419 + 2 NA Intergenic Intergenic -9281 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 301-144 chr16 24379060 24379247 + 2 NA Intergenic MER34A|LTR|ERV1 123600 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 263-461 chrX 70571648 70571815 + 2 NA intron (NM_001003811, intron 26 of 30) L1ME3|LINE|L1 -115737 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 393-156 chr2 21215169 21215475 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 91336 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 269-34 chr1 239927767 239928020 + 2 NA Intergenic LOR1-int|LTR|ERV1 -28021 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 309-203 chr17 54513085 54513338 + 2 NA Intergenic L1PA8A|LINE|L1 -387480 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 230-157 chr19 28668849 28669022 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 58759 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 369-125 chr14 84030181 84030503 + 2 NA Intergenic Intergenic -1241590 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 197-108 chr2 160229130 160229259 + 2 NA Intergenic Intergenic -28881 NM_001282354 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 653-36 chr13 62144122 62144623 + 2 NA Intergenic AluSq|SINE|Alu -67910 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 369-127 chr14 98617987 98618198 + 2 NA Intergenic L1ME2|LINE|L1 -93521 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 509-149 chr3 54362994 54363470 + 2 NA intron (NM_018398, intron 3 of 37) MER5C1|DNA|hAT-Charlie 240680 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 250-8 chr1 76709719 76709904 + 2 NA Intergenic Intergenic 69456 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 226-210 chr22 49241018 49241218 + 2 NA Intergenic Intergenic 302348 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 327-108 chr12 16919472 16919662 + 2 NA Intergenic L1MB7|LINE|L1 -69180 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 167-82 chr4 56352005 56352167 + 2 NA intron (NM_001286672, intron 9 of 10) intron (NM_001286672, intron 9 of 10) 35405 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 270-55 chr11 46236484 46236690 + 2 NA Intergenic L1ME3Cz|LINE|L1 -41075 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 223-12 chr1 105436154 105436287 + 2 NA Intergenic Intergenic 182715 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 251-226 chr3 21886057 21886191 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -71015 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 357-482 chr9 78634881 78635090 + 2 NA Intergenic Intergenic 337860 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 357-183 chr2 9360681 9360979 + 2 NA intron (NM_003887, intron 15 of 27) MER63B|DNA|hAT-Blackjack 61761 NR_134951 9270 Hs.467662 NM_004763 ENSG00000119185 ITGB1BP1 ICAP-1A|ICAP-1B|ICAP-1alpha|ICAP1|ICAP1A|ICAP1B integrin subunit beta 1 binding protein 1 protein-coding 223-160 chr2 105720540 105720694 + 2 NA Intergenic L1ME4c|LINE|L1 -24295 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 343-308 chr20 62103763 62104019 + 2 NA Intergenic L2a|LINE|L2 -18584 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 200-141 chr2 138326049 138326200 + 2 NA Intergenic Intergenic -175646 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 257-363 chr6 116600359 116600581 + 2 NA Intergenic Intergenic -16009 NM_001010892 345895 Hs.160380 NM_001010892 ENSG00000111834 RSPH4A CILD11|RSHL3|RSPH6B|dJ412I7.1 radial spoke head component 4A protein-coding 248-357 chr6 122212790 122212964 + 2 NA Intergenic AluSq|SINE|Alu -186674 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 311-499 chr8 69840773 69840989 + 2 NA Intergenic LTR40c|LTR|ERVL -5903 NM_030958 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 332-68 chr10 78400616 78400793 + 2 NA Intergenic Intergenic 133362 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 255-201 chr2 81117462 81117651 + 2 NA Intergenic L3|LINE|CR1 349390 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 293-17 chr1 176331666 176331874 + 2 NA Intergenic L2a|LINE|L2 -124484 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 424-101 chr17 61108664 61108989 + 2 NA intron (NM_001330413, intron 23 of 25) L1PB1|LINE|L1 258878 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 288-364 chr6 52540190 52540427 + 2 NA intron (NM_012288, intron 1 of 10) L4_A_Mam|LINE|RTE-X 36752 NM_012288 9697 Hs.520182 NM_012288 ENSG00000065308 TRAM2 - translocation associated membrane protein 2 protein-coding 584-71 chr2 49766661 49767070 + 2 NA Intergenic Intergenic 207338 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 173-144 chr9 1699562 1699706 + 2 NA Intergenic HAL1|LINE|L1 -315713 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 399-273 chr6 164632459 164632826 + 2 NA Intergenic Intergenic 189421 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 251-11 chr1 101211510 101211717 + 2 NA Intergenic LTR47A|LTR|ERVL 24915 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 174-74 chr20 15757329 15757450 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 165925 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 290-393 chr6 96479654 96479942 + 2 NA Intergenic Intergenic -42008 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 378-23 chr1 153147466 153147798 + 2 NA Intergenic L1ME3B|LINE|L1 3258 NM_001014291 6706 Hs.490253 NM_001014291 ENSG00000159516 SPRR2G - small proline rich protein 2G protein-coding 561-169 chr5 143197255 143197769 + 2 NA intron (NM_001349547, intron 20 of 21) L1ME3B|LINE|L1 5012 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 334-567 chr9 79831253 79831501 + 2 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) 6847 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 436-37 chr10 76810841 76811082 + 2 NA Intergenic Intergenic -77083 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 433-63 chr12 71292655 71292894 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -134775 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 299-67 chr10 105201461 105201697 + 2 NA intron (NM_014978, intron 16 of 26) intron (NM_014978, intron 16 of 26) -535363 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 282-203 chr2 52725866 52726140 + 2 NA Intergenic Intergenic -23388 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 216-326 chr7 106392909 106393054 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -107998 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 245-7 chr1 104518712 104518906 + 2 NA Intergenic L1MA4|LINE|L1 445786 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 422-40 chr11 5751411 5751688 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -3144 NM_001005175 390072 Hs.553735 NM_001005175 ENSG00000181074 OR52N4 OR11-64 olfactory receptor family 52 subfamily N member 4 (gene/pseudogene) protein-coding 591-35 chr13 94280831 94281394 + 2 NA intron (NM_005708, intron 4 of 8) intron (NM_005708, intron 4 of 8) -93121 NR_046535 100873972 Hs.670344 NR_046535 ENSG00000236520 GPC6-AS1 - GPC6 antisense RNA 1 ncRNA 278-290 chr3 155788132 155788285 + 2 NA intron (NM_173657, intron 3 of 5) AluY|SINE|Alu 18070 NM_001308229 285315 Hs.350846 NM_173657 ENSG00000174928 C3orf33 AC3-33 chromosome 3 open reading frame 33 protein-coding 288-365 chr6 52858970 52859197 + 2 NA Intergenic Intergenic -12988 NM_153699 221357 Hs.646984 NM_153699 ENSG00000182793 GSTA5 - glutathione S-transferase alpha 5 protein-coding 340-251 chr2 66310908 66311134 + 2 NA Intergenic Intergenic 47307 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 343-581 chr9 75311783 75312021 + 2 NA Intergenic L1PA16|LINE|L1 223388 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 728-2 chr1 78507719 78508255 + 2 NA intron (NM_001039585, intron 3 of 3) HAL1ME|LINE|L1 17013 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 358-451 chr7 104408061 104408372 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 79560 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 390-37 chr10 60587465 60587720 + 2 NA intron (NM_001204403, intron 2 of 43) L1MC5a|LINE|L1 -14636 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 634-17 chr10 78818475 78819028 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 248697 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 331-371 chr3 193202074 193202348 + 2 NA Intergenic Intergenic -39011 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 547-203 chr6 62344074 62344524 + 2 NA Intergenic L1P4a|LINE|L1 -58072 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 503-40 chr10 85016966 85017281 + 2 NA Intergenic L1MA7|LINE|L1 181782 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 657-79 chr5 111180957 111181581 + 2 NA Intergenic Intergenic -42314 NM_001323375 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 344-360 chr4 92255982 92256249 + 2 NA Intergenic L1M2|LINE|L1 21187 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 678-15 chr11 96563205 96563757 + 2 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 55056 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 592-89 chr2 135499339 135499740 + 2 NA intron (NM_001286569, intron 2 of 21) L1MEd|LINE|L1 31046 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 402-109 chr17 27945325 27945561 + 2 NA intron (NR_146896, intron 2 of 4) MER1B|DNA|hAT-Charlie 46264 NR_146896 105371708 Hs.385535 NR_146896 LINC01992 - long intergenic non-protein coding RNA 1992 ncRNA 279-111 chr15 37021168 37021391 + 2 NA intron (NM_172316, intron 8 of 12) intron (NM_172316, intron 8 of 12) -48378 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 231-270 chr4 177922385 177922561 + 2 NA intron (NR_028342, intron 2 of 5) MLT2D|LTR|ERVL -14537 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 210-203 chr4 88739895 88740058 + 2 NA intron (NM_001015045, intron 13 of 17) intron (NM_001015045, intron 13 of 17) 30187 NR_002806 285512 Hs.744957 NR_002806 ENSG00000248019 FAM13A-AS1 FAM13A1OS|FAM13AOS|NCRNA00039 FAM13A antisense RNA 1 ncRNA 307-525 chr9 119719306 119719536 + 2 NA Intergenic Intergenic -215639 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 318-23 chr1 107712509 107712697 + 2 NA intron (NM_006113, intron 15 of 26) intron (NM_006113, intron 15 of 26) -24104 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 350-142 chr14 81835053 81835304 + 2 NA Intergenic Intergenic -92040 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 290-195 chr2 3622534 3622699 + 2 NA intron (NM_001255988, intron 2 of 4) MSTC|LTR|ERVL-MaLR 16564 NM_001255989 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 524-76 chr16 49140363 49140705 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 141304 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 333-66 chr10 98635455 98635730 + 2 NA intron (NM_021828, intron 7 of 11) AluJo|SINE|Alu -188629 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 336-423 chr4 88401628 88401865 + 2 NA intron (NM_001165136, intron 8 of 21) L2a|LINE|L2 23007 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 372-94 chr12 2427120 2427342 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 157455 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 289-487 chr9 30188237 30188392 + 2 NA Intergenic L1MB3|LINE|L1 220140 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 658-31 chr11 110752927 110753361 + 2 NA Intergenic L1PB2|LINE|L1 -39955 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 176-19 chr11 130492722 130492848 + 2 NA Intergenic L1MCa|LINE|L1 43811 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 305-304 chr20 15808848 15809113 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 114334 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 253-55 chr10 66457253 66457478 + 2 NA intron (NM_001127384, intron 11 of 17) L1MD1|LINE|L1 -468671 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 293-160 chr17_KI270729v1_random 26907 27144 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 253-273 chr3 137904555 137904698 + 2 NA Intergenic L1PREC2|LINE|L1 -94190 NM_001002026 51208 Hs.655324 NM_016369 ENSG00000066405 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 306-358 chr4 74253253 74253467 + 2 NA intron (NM_001144978, intron 6 of 7) L1M3e|LINE|L1 -55110 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 271-183 chr18 77757165 77757429 + 2 NA Intergenic Intergenic 236430 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 269-24 chr1 177117953 177118162 + 2 NA intron (NM_207108, intron 1 of 21) L2c|LINE|L2 46655 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 420-133 chr2 51524015 51524361 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 491587 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 413-265 chr6 56148863 56149237 + 2 NA intron (NR_134849, intron 10 of 29) intron (NR_134849, intron 10 of 29) -57388 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 352-449 chr6 42469296 42469560 + 2 NA Intergenic L1MEf|LINE|L1 -17204 NM_033502 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 277-176 chr2 16950867 16951082 + 2 NA Intergenic Intergenic -285140 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 451-85 chr16 13620473 13620786 + 2 NA Intergenic LTR8B|LTR|ERV1 -299528 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 324-3 chr1 19154540 19154778 + 2 NA intron (NM_020765, intron 44 of 105) intron (NM_020765, intron 44 of 105) 55607 NM_020765 23352 Hs.148078 NM_020765 ENSG00000127481 UBR4 RBAF600|ZUBR1|p600 ubiquitin protein ligase E3 component n-recognin 4 protein-coding 373-62 chr10 97798353 97798570 + 2 NA Intergenic Intergenic -26462 NM_003015 6425 Hs.279565 NM_003015 ENSG00000120057 SFRP5 SARP3 secreted frizzled related protein 5 protein-coding 216-355 chrX 38112325 38112515 + 2 NA intron (NM_001163334, intron 13 of 16) LTR16A2|LTR|ERVL 78886 NM_001163334 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 347-544 chr9 32299829 32300070 + 2 NA Intergenic L1ME4a|LINE|L1 -84654 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 252-162 chr18 4264204 4264421 + 2 NA promoter-TSS (NR_036489) promoter-TSS (NR_036489) -290 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 671-11 chr1 244181836 244182231 + 2 NA Intergenic Intergenic 128828 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 318-256 chr2 45805476 45805791 + 2 NA intron (NM_005400, intron 1 of 14) AluSq|SINE|Alu 153958 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 205-92 chr14 82346041 82346240 + 2 NA Intergenic Intergenic -296492 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 208-286 chr9 103165111 103165273 + 2 NA intron (NR_121578, intron 8 of 9) AluSx|SINE|Alu 159841 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 431-86 chr14 89652406 89652824 + 2 NA Intergenic Intergenic -33450 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 555-56 chr14 59676299 59676666 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -29462 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 375-425 chr8 134013185 134013387 + 2 NA Intergenic Intergenic 126790 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 390-344 chr7 12295361 12295635 + 2 NA Intergenic MER52-int|LTR|ERV1 84204 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 257-173 chr2 6705877 6706048 + 2 NA Intergenic L1MB7|LINE|L1 -55443 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 388-333 chr7 96462943 96463288 + 2 NA Intergenic L2a|LINE|L2 40408 NR_163949 314-90 chr11 32291092 32291264 + 2 NA Intergenic L2b|LINE|L2 109222 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 209-202 chr3 85414074 85414274 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 28464 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 187-117 chr3 140900718 140900880 + 2 NA Intergenic LTR17|LTR|ERV1 -41037 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 303-185 chr19 31186031 31186258 + 2 NA intron (NR_147209, intron 2 of 4) L1ME2z|LINE|L1 18634 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 146-38 chr18 53410794 53410881 + 2 NA intron (NM_005215, intron 20 of 28) intron (NM_005215, intron 20 of 28) -157610 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 278-409 chr8 48340860 48341028 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -210623 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 352-126 chr13 92899067 92899287 + 2 NA Intergenic L1PA16|LINE|L1 -146164 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 196-13 chr1 107440445 107440589 + 2 NA intron (NM_001113226, intron 6 of 6) MIRb|SINE|MIR 247982 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 508-196 chr5 158805080 158805563 + 2 NA intron (NM_001324107, intron 8 of 15) intron (NM_001324107, intron 8 of 15) 292635 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 198-206 chr5 169419022 169419193 + 2 NA Intergenic Intergenic -117968 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 299-494 chrUn_KI270438v1 98646 98836 + 2 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 1107-3 chr10 59417501 59418253 + 2 NA Intergenic L1MA2|LINE|L1 -54696 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 487-234 chr5 83882748 83883156 + 2 NA Intergenic L1ME4a|LINE|L1 -162097 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 405-78 chr13 81459003 81459266 + 2 NA Intergenic Intergenic -232151 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 388-201 chr21 30328650 30328950 + 2 NA Intergenic Intergenic -8485 NM_203405 388818 Hs.28704 NM_203405 ENSG00000197683 KRTAP26-1 - keratin associated protein 26-1 protein-coding 514-159 chr2 205303890 205304363 + 2 NA intron (NM_205863, intron 18 of 21) intron (NM_205863, intron 18 of 21) -378374 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 874-32 chr8 97416002 97416584 + 2 NA intron (NR_125390, intron 2 of 2) intron (NR_125390, intron 2 of 2) 30204 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 175-156 chr7 142014393 142014541 + 2 NA intron (NM_004668, intron 3 of 47) intron (NM_004668, intron 3 of 47) 18588 NM_001365693 8972 Hs.122785 NM_004668 ENSG00000257335 MGAM MG|MGA maltase-glucoamylase protein-coding 250-351 chr5 93942799 93942947 + 2 NA intron (NR_028080, intron 4 of 8) intron (NR_028080, intron 4 of 8) 168790 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 451-152 chr3 134890257 134890678 + 2 NA intron (NM_004441, intron 1 of 15) L1ME3C|LINE|L1 95207 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 295-88 chr11 115044039 115044191 + 2 NA Intergenic Intergenic -289462 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 171-142 chr8 138625506 138625642 + 2 NA intron (NM_152888, intron 51 of 64) L1ME4c|LINE|L1 -127844 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 253-203 chr2 182326019 182326185 + 2 NA intron (NM_005019, intron 1 of 14) L1MB4|LINE|L1 -84039 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 390-165 chr19 40477562 40477950 + 2 NA intron (NM_020971, intron 2 of 35) L2b|LINE|L2 10755 NM_020971 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 250-444 chr8 124983893 124984056 + 2 NA Intergenic Intergenic 10679 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 319-41 chr10 4337271 4337495 + 2 NA Intergenic Intergenic -46863 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 239-47 chr10 98325088 98325272 + 2 NA Intergenic L3|LINE|CR1 -56986 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 522-174 chr3 71201698 71202213 + 2 NA intron (NR_146142, intron 5 of 19) intron (NR_146142, intron 5 of 19) 43122 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 462-70 chr12 125790634 125790977 + 2 NA Intergenic LOR1b|LTR|ERV1 168353 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 274-341 chr6 142885989 142886150 + 2 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 59107 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 246-382 chr7 107796594 107796770 + 2 NA intron (NM_000111, intron 1 of 20) intron (NM_000111, intron 1 of 20) 6551 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 287-143 chr14 100825621 100825855 + 2 NA promoter-TSS (NR_002766) promoter-TSS (NR_002766) -370 NR_046466 55384 Hs.654863 NR_002766 ENSG00000214548 MEG3 FP504|GTL2|LINC00023|NCRNA00023|PRO0518|PRO2160|onco-lncRNA-83|prebp1 maternally expressed 3 ncRNA 380-300 chr5 26447974 26448299 + 2 NA Intergenic Intergenic 590450 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 281-346 chr5 9091315 9091527 + 2 NA intron (NM_003966, intron 16 of 22) intron (NM_003966, intron 16 of 22) -37526 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 354-452 chr8 43674081 43674304 + 2 NA Intergenic Intergenic 381750 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 372-460 chr7 68928075 68928393 + 2 NA Intergenic Intergenic 669390 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 554-216 chr9 103778974 103779348 + 2 NA Intergenic L1MA6|LINE|L1 -220548 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 376-172 chr2 29653891 29654259 + 2 NA intron (NM_004304, intron 3 of 28) MIRc|SINE|MIR -178698 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 256-225 chr2 177530228 177530412 + 2 NA intron (NM_003659, intron 19 of 19) intron (NM_003659, intron 19 of 19) 22476 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 430-299 chr7 134465812 134466177 + 2 NA Intergenic L1M2c|LINE|L1 -6755 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 152-14 chr10 84993995 84994098 + 2 NA Intergenic Intergenic 204859 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 341-465 chr6 69003536 69003783 + 2 NA intron (NM_001704, intron 11 of 31) intron (NM_001704, intron 11 of 31) 368377 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 463-97 chr15 56291610 56292052 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -46749 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 509-36 chr11 20979897 20980287 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 310506 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 754-39 chr2 34836532 34837223 + 2 NA Intergenic L1PA16|LINE|L1 159320 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 315-227 chr2 30620993 30621299 + 2 NA intron (NM_182551, intron 6 of 6) intron (NM_182551, intron 6 of 6) 173900 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 218-150 chr2 63958876 63959016 + 2 NA intron (NM_001005739, intron 7 of 22) MER124|DNA?|DNA? 60482 NM_001005739 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 350-225 chr2 76355903 76356100 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -629964 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 405-57 chr12 37519093 37519343 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -797556 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 361-393 chr6 113196890 113197121 + 2 NA Intergenic Intergenic 236442 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 423-303 chr8 135698431 135698722 + 2 NA Intergenic LTR47B2|LTR|ERVL 241120 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 325-132 chr12 80572277 80572496 + 2 NA intron (NM_001145026, intron 25 of 44) L1ME2z|LINE|L1 128151 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 296-382 chr5 125940992 125941184 + 2 NA Intergenic L1MC1|LINE|L1 -238489 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 205-159 chr2 209691537 209691691 + 2 NA intron (NM_001039538, intron 7 of 14) intron (NM_001039538, intron 7 of 14) -80218 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 263-166 chr18 33333172 33333358 + 2 NA exon (NM_001105528, exon 10 of 23) exon (NM_001105528, exon 10 of 23) 107306 NM_001371121 313-130 chr13 99752363 99752542 + 2 NA intron (NR_120421, intron 4 of 4) intron (NR_120421, intron 4 of 4) -23451 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 346-440 chr6 125407707 125407892 + 2 NA Intergenic MER74B|LTR|ERVL -105832 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 278-173 chr18 21211080 21211233 + 2 NA Intergenic L1MC1|LINE|L1 -31086 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 450-103 chr16 62441266 62441622 + 2 NA Intergenic L1MB2|LINE|L1 -405006 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 439-242 chr6 10277325 10277651 + 2 NA Intergenic L1MD1|LINE|L1 -127014 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 487 chr1 4920764 4921034 + 2 NA Intergenic Intergenic 266290 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 191-3 chr1 53388155 53388318 + 2 NA Intergenic L1MEc|LINE|L1 51784 NR_002314 163742 Hs.99394 NR_002314 ENSG00000236253 SLC25A3P1 - solute carrier family 25 member 3 pseudogene 1 pseudo 259-33 chr1 241669857 241670075 + 2 NA intron (NM_001367482, intron 2 of 27) MER5A1|DNA|hAT-Charlie 17685 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 242-118 chr15 76726660 76726851 + 2 NA intron (NR_148227, intron 17 of 32) L1MB3|LINE|L1 135189 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 560-186 chr8 101665512 101666014 + 2 NA intron (NM_024915, intron 15 of 15) MIRb|SINE|MIR 125206 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 355-517 chr8 134955954 134956209 + 2 NA Intergenic Intergenic 106146 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 411-22 chr10 16563253 16563608 + 2 NA Intergenic HAL1b|LINE|L1 -41551 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 373-61 chr10 95650789 95651095 + 2 NA intron (NM_001323414, intron 2 of 17) AluSx1|SINE|Alu 5769 NM_001323419 5832 Hs.500645 NM_002860 ENSG00000059573 ALDH18A1 ADCL3|ARCL3A|GSAS|P5CS|PYCS|SPG9|SPG9A|SPG9B aldehyde dehydrogenase 18 family member A1 protein-coding 550-169 chr4 134593773 134594169 + 2 NA Intergenic Intergenic 170103 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 160-39 chr2 69909092 69909187 + 2 NA Intergenic L2a|LINE|L2 -5902 NM_001202514 4084 Hs.468908 NM_002357 ENSG00000059728 MXD1 BHLHC58|MAD|MAD1 MAX dimerization protein 1 protein-coding 613-133 chr8 55332128 55332610 + 2 NA intron (NM_052898, intron 1 of 2) L1M4c|LINE|L1 122952 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 448-15 chr1 163891994 163892232 + 2 NA Intergenic Intergenic -468922 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 405-292 chr7 4532877 4533249 + 2 NA Intergenic Intergenic -149232 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 386-204 chr20 16883772 16884019 + 2 NA Intergenic L1ME4a|LINE|L1 135542 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 269-147 chr16 55166900 55167051 + 2 NA Intergenic MIRb|SINE|MIR -157584 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 275-333 chr7 51483915 51484078 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -90740 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 391-37 chr10 48640472 48640814 + 2 NA intron (NM_001347738, intron 2 of 10) L1MB7|LINE|L1 11859 NM_001256025 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 234-320 chr5 121003536 121003713 + 2 NA Intergenic Intergenic -318926 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 373-303 chr4 181165214 181165533 + 2 NA Intergenic Intergenic -6224 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 500-121 chr2 5798013 5798374 + 2 NA Intergenic HAL1|LINE|L1 14403 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 306-468 chr7 50228050 50228285 + 2 NA Intergenic Intergenic -75897 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 260-394 chr6 166826375 166826561 + 2 NA intron (NM_001318936, intron 2 of 22) intron (NM_001318936, intron 2 of 22) 36057 NM_001318936 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 226-337 chr8 52966022 52966203 + 2 NA Intergenic Intergenic 26204 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 212-302 chr7 42990781 42990922 + 2 NA Intergenic AluJb|SINE|Alu 58475 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 389-124 chr16 73784430 73784802 + 2 NA Intergenic AluSc|SINE|Alu 397811 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 498-272 chr8 85214777 85215136 + 2 NA TTS (NM_001951) TTS (NM_001951) 5418 NR_120681 401466 Hs.443072 NM_001099670 ENSG00000176731 RBIS C8orf59 ribosomal biogenesis factor protein-coding 217-16 chr1 163571171 163571358 + 2 NA Intergenic Intergenic -148073 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 242-31 chr10 8843612 8843764 + 2 NA Intergenic HAL1|LINE|L1 -54301 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 471-102 chr17 34721686 34722072 + 2 NA Intergenic Intergenic 141130 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 644-55 chr22 26217084 26217438 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 47787 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 258-378 chr7 132746318 132746530 + 2 NA Intergenic Intergenic -12546 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 242-196 chr2 123967617 123967806 + 2 NA Intergenic Intergenic 57463 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 709-9 chr10 107360030 107360451 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -195534 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 478-45 chr11 81854568 81855014 + 2 NA Intergenic L1MEc|LINE|L1 36045 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 469-49 chr11 38715137 38715530 + 2 NA Intergenic Intergenic 66475 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 327-527 chr9 96199156 96199393 + 2 NA Intergenic Intergenic -47189 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 294-223 chr2 105483952 105484138 + 2 NA Intergenic L1ME3E|LINE|L1 -45532 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 335-27 chr1 178659990 178660308 + 2 NA Intergenic Intergenic -17600 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 286-225 chr2 174019795 174019981 + 2 NA Intergenic Intergenic -5392 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 360-415 chr6 115735265 115735488 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -91541 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 265-136 chr16 47752041 47752278 + 2 NA Intergenic L1ME3G|LINE|L1 -106422 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 227-142 chr18 14023132 14023328 + 2 NA Intergenic Intergenic -107523 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 294-302 chr3 97144922 97145086 + 2 NA intron (NM_001080448, intron 3 of 17) HAL1|LINE|L1 -294603 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 290-25 chr1 178416487 178416679 + 2 NA intron (NM_004841, intron 2 of 15) L1MCa|LINE|L1 75132 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 228-236 chr4 31382790 31382948 + 2 NA Intergenic Intergenic -123675 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 540-182 chr6 45360314 45360729 + 2 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 16997 NR_146635 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 179-91 chr5 7498025 7498164 + 2 NA intron (NM_020546, intron 2 of 24) L1MC4|LINE|L1 101956 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 316-268 chr2 79357477 79357638 + 2 NA Intergenic L1MEg|LINE|L1 143287 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 135-45 chr3 1828482 1828560 + 2 NA Intergenic Intergenic -270282 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 298-299 chr3 84680237 84680445 + 2 NA intron (NR_033860, intron 16 of 20) intron (NR_033860, intron 16 of 20) 189234 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 310-457 chr6 131057017 131057219 + 2 NA intron (NM_001135554, intron 1 of 14) intron (NM_001135554, intron 1 of 14) 6127 NM_001431 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 309-8 chr1 70998421 70998602 + 2 NA intron (NM_198719, intron 2 of 3) intron (NM_198719, intron 2 of 3) -47995 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 498-113 chr2 5272392 5272787 + 2 NA Intergenic Intergenic 418529 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 260-86 chr11 101042592 101042820 + 2 NA intron (NR_073143, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 86357 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 225-68 chr12 13792269 13792450 + 2 NA intron (NM_000834, intron 2 of 12) LTR88b|LTR|Gypsy? 187997 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 542-161 chr5 13130319 13130662 + 2 NA Intergenic L1PA8|LINE|L1 -97604 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 748-38 chr16 49036070 49036643 + 2 NA Intergenic Intergenic 245482 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 187-2 chr1 31943571 31943748 + 2 NA Intergenic Intergenic -5291 NM_001195101 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 329-391 chr3 181978788 181979060 + 2 NA intron (NR_104146, intron 5 of 7) L3|LINE|CR1 26560 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 287-274 chr3 194877406 194877582 + 2 NA Intergenic Intergenic -108785 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 218-141 chr19 51391732 51391908 + 2 NA Intergenic AluSx1|SINE|Alu -1229 NM_001193623 147646 Hs.148344 NM_001193623 ENSG00000262874 C19orf84 - chromosome 19 open reading frame 84 protein-coding 178-148 chr8 107393922 107394061 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -57476 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 282-468 chr8 129438351 129438592 + 2 NA intron (NR_130920, intron 1 of 3) Tigger2a|DNA|TcMar-Tigger 45671 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 116-53 chr9 107402480 107402556 + 2 NA Intergenic MER117|DNA|hAT-Charlie 64067 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 516-255 chr8 123879024 123879313 + 2 NA intron (NM_001039112, intron 1 of 40) AluJr|SINE|Alu 27181 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 213-97 chr15 53490971 53491154 + 2 NA Intergenic Intergenic 49790 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 502-101 chr15 94509099 94509591 + 2 NA Intergenic L1MA5|LINE|L1 153415 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 350-308 chr3 54729433 54729741 + 2 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -89730 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 527-116 chr19 12078620 12079044 + 2 NA 3' UTR (NM_001136501, exon 4 of 4) 3' UTR (NM_001136501, exon 4 of 4) -13465 NM_001348164 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 321-387 chr3 135817757 135817959 + 2 NA Intergenic L1M1|LINE|L1 -147870 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 413-245 chr5 113631286 113631662 + 2 NA Intergenic Intergenic 117780 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 329-437 chr5 4480589 4480800 + 2 NA Intergenic Intergenic -292787 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 389-230 chr3 78528931 78529276 + 2 NA Intergenic L1M4a1|LINE|L1 -480140 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 341-236 chr2 29184169 29184431 + 2 NA TTS (NM_001287527) TTS (NM_001287527) 39600 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 305-83 chr10 118489889 118490155 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 105626 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 294-502 chr9 88415021 88415265 + 2 NA intron (NM_006717, intron 1 of 5) AluSc8|SINE|Alu 26699 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 415-115 chr2 5806490 5806745 + 2 NA Intergenic AluSx1|SINE|Alu 5979 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 551-228 chr9 11243862 11244365 + 2 NA Intergenic Intergenic 630907 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 428-276 chr7 71559012 71559272 + 2 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -251372 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 605-95 chr5 153809121 153809450 + 2 NA intron (NM_000827, intron 15 of 15) intron (NM_000827, intron 15 of 15) 89702 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 421-226 chr4 163795558 163795869 + 2 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -182179 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 436-2 chr1 28334319 28334660 + 2 NA exon (NM_017638, exon 3 of 3) exon (NM_017638, exon 3 of 3) 5449 NM_001127350 54797 Hs.479911 NM_017638 ENSG00000130772 MED18 SRB5|p28b mediator complex subunit 18 protein-coding 311-318 chr21 30555829 30556036 + 2 NA Intergenic AluSx1|SINE|Alu 5381 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 154-46 chr2 26235901 26235991 + 2 NA intron (NM_000182, intron 4 of 19) L1ME3Cz|LINE|L1 8686 NM_000182 3030 Hs.516032 NM_000182 ENSG00000084754 HADHA ECHA|GBP|HADH|LCEH|LCHAD|MTPA|TP-ALPHA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha protein-coding 190-55 chr14 37438108 37438289 + 2 NA intron (NM_138731, intron 12 of 13) intron (NM_138731, intron 12 of 13) 157051 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 254-348 chr6 61901230 61901373 + 2 NA exon (NM_001350622, exon 5 of 10) exon (NM_001350622, exon 5 of 10) 327171 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 241-272 chr4 89377210 89377390 + 2 NA Intergenic Intergenic -69500 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 216-311 chr6 112928658 112928844 + 2 NA Intergenic Intergenic 504696 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 370-147 chr14 70608860 70609174 + 2 NA non-coding (NR_110071, exon 3 of 3) non-coding (NR_110071, exon 3 of 3) -8327 NM_005466 10001 Hs.497353 NM_005466 ENSG00000133997 MED6 ARC33|NY-REN-28 mediator complex subunit 6 protein-coding 272-279 chr3 135889130 135889320 + 2 NA Intergenic Intergenic -76503 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 211-141 chr2 79679345 79679502 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -30064 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 380-145 chr16 87065478 87065852 + 2 NA Intergenic Intergenic 7881 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 301-323 chr4 85329139 85329311 + 2 NA Intergenic LTR84a|LTR|ERVL -145925 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 326-366 chr4 30599434 30599694 + 2 NA Intergenic LTR82B|LTR|ERVL -120805 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 506-155 chr2 144586579 144586989 + 2 NA Intergenic L2a|LINE|L2 -62340 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 438-144 chr20 23313885 23314141 + 2 NA Intergenic AluJr|SINE|Alu -36778 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 369-425 chr8 131361331 131361567 + 2 NA Intergenic L1PA15|LINE|L1 -320540 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 498-190 chr4 48840180 48840609 + 2 NA intron (NM_001079839, intron 3 of 8) UCON71_Crp|Unknown|Unknown 9088 NM_001168254 54940 Hs.518750 NM_017830 ENSG00000109180 OCIAD1 ASRIJ|OCIA|TPA018 OCIA domain containing 1 protein-coding 333-509 chr6 96433411 96433603 + 2 NA Intergenic L1PA10|LINE|L1 -88299 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 552-111 chr2 135478587 135478944 + 2 NA intron (NM_001286569, intron 2 of 21) L1ME3B|LINE|L1 51820 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 289-418 chr6 106031195 106031412 + 2 NA Intergenic L2c|LINE|L2 -55033 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 479-92 chr19 30675175 30675645 + 2 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 303026 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 246-37 chr10 37764763 37764919 + 2 NA intron (NR_148006, intron 7 of 7) intron (NR_148006, intron 7 of 7) 30334 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 419-81 chr13 75106125 75106435 + 2 NA Intergenic L1M5|LINE|L1 134101 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 385-193 chr2 174650054 174650267 + 2 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) -15555 NM_003387 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 320-274 chr2 124651885 124652093 + 2 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 626702 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 658-105 chr6 43168954 43169529 + 2 NA Intergenic Intergenic -2028 NM_003131 6722 Hs.520140 NM_003131 ENSG00000112658 SRF MCM1 serum response factor protein-coding 194-83 chr19 36751324 36751456 + 2 NA intron (NM_001267779, intron 3 of 3) L1MC3|LINE|L1 21417 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 265-137 chr16 79024642 79024874 + 2 NA intron (NM_001291997, intron 7 of 7) AluJr|SINE|Alu 575979 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 370-485 chrX 64791292 64791480 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 185064 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 139-93 chr8 134301138 134301247 + 2 NA Intergenic Intergenic -296879 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 237-49 chr11 30067918 30068051 + 2 NA Intergenic L1MB7|LINE|L1 -50954 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 285-344 chr5 92114557 92114785 + 2 NA Intergenic Intergenic -731354 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 570-174 chr6 147617251 147617659 + 2 NA Intergenic Intergenic 108765 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 580-22 chr10 106594956 106595320 + 2 NA intron (NM_001206569, intron 24 of 25) intron (NM_001206569, intron 24 of 25) 454973 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 301-179 chr18 70480224 70480514 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -95778 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 293-321 chr4 171038091 171038379 + 2 NA Intergenic L1MEg|LINE|L1 -2367 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 302-191 chr2 382877 383041 + 2 NA Intergenic MIRb|SINE|MIR 66675 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 279-387 chr7 33722055 33722264 + 2 NA Intergenic Intergenic -182756 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 349-285 chr20 753695 753940 + 2 NA Intergenic AluSx1|SINE|Alu 14683 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 276-390 chr6 4380415 4380631 + 2 NA Intergenic MIRc|SINE|MIR -108275 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 486-187 chr21 36876609 36877014 + 2 NA intron (NM_001352515, intron 6 of 10) L1ME2z|LINE|L1 85547 NM_001352518 3141 Hs.371350 NM_000411 ENSG00000159267 HLCS HCS holocarboxylase synthetase protein-coding 402-75 chr13 71825154 71825376 + 2 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 41927 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 507-163 chr3 102511329 102511775 + 2 NA Intergenic Intergenic 76537 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 567-119 chr3 101892953 101893437 + 2 NA Intergenic L1MB2|LINE|L1 43681 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 354-212 chr2 66290220 66290452 + 2 NA Intergenic L1MB7|LINE|L1 67992 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 150-66 chr3 28731708 28731785 + 2 NA intron (NR_038840, intron 2 of 4) L1MEj|LINE|L1 156468 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 326-574 chr9 96759238 96759549 + 2 NA exon (NM_014930, exon 6 of 6) exon (NM_014930, exon 6 of 6) 18694 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 249-236 chr20 20283324 20283514 + 2 NA intron (NM_015585, intron 22 of 26) L1MEf|LINE|L1 -84685 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 326-579 chr9 120297624 120297834 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -52679 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 319-393 chr4 179575722 179575914 + 2 NA Intergenic L1MA10|LINE|L1 1583331 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 412-252 chr5 23938122 23938492 + 2 NA Intergenic L1MA3|LINE|L1 -13041 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 229-340 chr6 116980744 116980951 + 2 NA Intergenic L1ME1|LINE|L1 103605 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 467-263 chr7 53765719 53766032 + 2 NA non-coding (NR_038371, exon 3 of 6) non-coding (NR_038371, exon 3 of 6) 46056 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 343-337 chr3 56040307 56040623 + 2 NA intron (NR_132749, intron 7 of 17) AluJo|SINE|Alu -187871 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 260-41 chr10 35398993 35399189 + 2 NA intron (NM_001282853, intron 2 of 10) Tigger16b|DNA|TcMar-Tigger 62217 NM_001282852 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 377-441 chrX 99798369 99798586 + 2 NA Intergenic HAL1|LINE|L1 611796 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 300-88 chr12 59231931 59232166 + 2 NA Intergenic Intergenic -311510 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 281-313 chr4 43725505 43725763 + 2 NA Intergenic Intergenic -233091 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 364-277 chr3 88711225 88711506 + 2 NA Intergenic L1MB3|LINE|L1 372909 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 242-408 chr8 121705613 121705798 + 2 NA Intergenic Intergenic -64265 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 320-260 chr2 76478350 76478656 + 2 NA Intergenic Intergenic -507462 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 306-164 chr15 61132241 61132482 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 96941 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 513-233 chr5 131057198 131057566 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 107874 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 269-212 chr2 161759110 161759269 + 2 NA intron (NM_001354443, intron 2 of 25) L1MA9|LINE|L1 134773 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 173-77 chr2 188928991 188929104 + 2 NA Intergenic L1M3b|LINE|L1 -45326 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 455-244 chr6 93290227 93290574 + 2 NA intron (NM_004440, intron 5 of 16) intron (NM_004440, intron 5 of 16) 129159 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 471-108 chr17 75354446 75354879 + 2 NA intron (NM_002086, intron 2 of 5) MER1B|DNA|hAT-Charlie 51016 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 408-355 chr9 75234726 75234966 + 2 NA Intergenic Intergenic 146332 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 127-47 chr2 63193039 63193132 + 2 NA intron (NR_148705, intron 13 of 16) intron (NR_148705, intron 13 of 16) -73543 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 368-127 chr13 52877423 52877682 + 2 NA Intergenic L1MEf|LINE|L1 -28912 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 223-127 chr18 10024588 10024763 + 2 NA Intergenic Intergenic 110659 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 137-86 chr7 134800895 134800985 + 2 NA intron (NM_033157, intron 1 of 14) DNA1_Mam|DNA|TcMar 21306 NM_004342 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 283-249 chr2 191412798 191413067 + 2 NA intron (NM_012223, intron 25 of 28) intron (NM_012223, intron 25 of 28) 167528 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 333-449 chr5 57782719 57782922 + 2 NA Intergenic Intergenic 116342 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 363-293 chr3 106249714 106250070 + 2 NA Intergenic (TAC)n|Simple_repeat|Simple_repeat -380491 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 409-126 chr19 56374535 56374832 + 2 NA intron (NR_024057, intron 4 of 4) MER68|LTR|ERVL -6300 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 230-378 chr8 109020045 109020228 + 2 NA Intergenic Intergenic -66492 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 506-294 chr8 134988976 134989405 + 2 NA Intergenic L2b|LINE|L2 139255 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 339-346 chr3 1903462 1903667 + 2 NA Intergenic Intergenic -195239 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 465-37 chr10 117007160 117007542 + 2 NA intron (NM_001258300, intron 2 of 17) intron (NM_001258300, intron 2 of 17) -1774 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 195-155 chr3 195286846 195286980 + 2 NA intron (NM_012287, intron 21 of 22) intron (NM_012287, intron 21 of 22) -15754 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 405-197 chr22 47936527 47936930 + 2 NA Intergenic MLT2A2|LTR|ERVL 305054 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 345-445 chr5 147028210 147028420 + 2 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) 27822 NM_181674 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 313-356 chr3 107072280 107072546 + 2 NA Intergenic L2|LINE|L2 168225 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 276-214 chr2 16968494 16968700 + 2 NA Intergenic L1ME3B|LINE|L1 -302763 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 262-93 chr12 28113250 28113457 + 2 NA Intergenic Intergenic -77103 NM_001352081 55297 Hs.653125 NM_018318 ENSG00000123106 CCDC91 HSD8|p56 coiled-coil domain containing 91 protein-coding 174-11 chr10 10847388 10847523 + 2 NA intron (NM_001326328, intron 2 of 15) intron (NM_001326328, intron 2 of 15) 48730 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 400-170 chr2 105951240 105951606 + 2 NA Intergenic Intergenic 99576 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 360-80 chr12 13454682 13455002 + 2 NA Intergenic Intergenic -78097 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 309-11 chr1 101390214 101390462 + 2 NA Intergenic Intergenic 66501 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 308-236 chr2 102615892 102616115 + 2 NA Intergenic Intergenic -3550 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 221-4 chr1 47672096 47672274 + 2 NA Intergenic L1MEg|LINE|L1 -234868 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 411-225 chr5 25131245 25131495 + 2 NA intron (NR_147006, intron 4 of 4) intron (NR_147006, intron 4 of 4) 59286 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 522-106 chr17 64297102 64297483 + 2 NA Intergenic AluJb|SINE|Alu -34032 NM_018469 55852 Hs.175414 NM_018469 ENSG00000136478 TEX2 HT008|TMEM96 testis expressed 2 protein-coding 819-31 chr6 14648720 14649259 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -363535 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 430-329 chr9 26155682 26156036 + 2 NA Intergenic Intergenic 89184 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 216-124 chr16 47607881 47607996 + 2 NA intron (NM_001031835, intron 14 of 31) L1MB7|LINE|L1 146607 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 200-175 chr3 77168440 77168602 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 70509 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 220-239 chr3 117134360 117134491 + 2 NA Intergenic Intergenic 212994 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 585-6 chr1 97377287 97377777 + 2 NA intron (NM_000110, intron 15 of 22) intron (NM_000110, intron 15 of 22) 281609 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 230-293 chr5 40739654 40739837 + 2 NA intron (NM_012382, intron 2 of 4) MSTA|LTR|ERVL-MaLR 16216 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 185-123 chr21 23419804 23419934 + 2 NA Intergenic Intergenic -35034 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 169-18 chr11 45497996 45498136 + 2 NA Intergenic L1ME1|LINE|L1 126669 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 498-207 chr5 5974232 5974539 + 2 NA Intergenic Intergenic 362907 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 427-189 chr4 85339749 85340046 + 2 NA Intergenic L1ME1|LINE|L1 -135253 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 265-126 chr15 94993608 94993824 + 2 NA Intergenic Intergenic 138353 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 378-369 chr6 47163010 47163355 + 2 NA Intergenic Intergenic -120850 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 177-57 chr15 92220007 92220107 + 2 NA Intergenic Intergenic -173824 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 627-43 chr18 28231377 28231836 + 2 NA Intergenic Intergenic -54476 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 344-455 chr7 41223599 41223870 + 2 NA Intergenic Intergenic 122130 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 510-189 chr3 144358659 144359112 + 2 NA Intergenic L1ME2|LINE|L1 385804 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 247-236 chr20 48029442 48029661 + 2 NA Intergenic L1MC2|LINE|L1 -39434 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 333-165 chr15 71190595 71190800 + 2 NA intron (NM_024817, intron 2 of 16) intron (NM_024817, intron 2 of 16) -1638 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 162-89 chr3 123480840 123480921 + 2 NA Intergenic MIRb|SINE|MIR -32335 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 239-290 chr4 149012006 149012200 + 2 NA Intergenic Intergenic -69725 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 210-120 chr2 27608215 27608399 + 2 NA intron (NM_001271289, intron 9 of 12) intron (NM_001271289, intron 9 of 12) -20341 NM_001145048 11321 Hs.18259 NM_007266 ENSG00000198522 GPN1 ATPBD1A|MBDIN|NTPBP|RPAP4|XAB1 GPN-loop GTPase 1 protein-coding 690-14 chr10 123823374 123823899 + 2 NA intron (NM_198148, intron 4 of 13) HAL1|LINE|L1 68171 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 185-7 chr1 166732708 166732848 + 2 NA Intergenic L1PA16|LINE|L1 -106697 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 640-51 chr17 10912165 10912552 + 2 NA Intergenic LTR8B|LTR|ERV1 -74271 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 489-274 chrX 66369381 66369785 + 2 NA Intergenic L1MB8|LINE|L1 201833 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 502-127 chr2 4563107 4563511 + 2 NA Intergenic L1PB1|LINE|L1 92913 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 159-42 chr2 69968921 69969039 + 2 NA intron (NR_033872, intron 9 of 10) intron (NR_033872, intron 9 of 10) -6715 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 511-51 chr12 61855457 61855869 + 2 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 337176 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 432-7 chr1 58989065 58989318 + 2 NA Intergenic L2c|LINE|L2 -31285 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 375-187 chr19 9370760 9370976 + 2 NA intron (NM_001172650, intron 6 of 11) L1MC5a|LINE|L1 -5448 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 208-153 chr22 24758052 24758253 + 2 NA intron (NM_001008496, intron 3 of 20) intron (NM_001008496, intron 3 of 20) -6349 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 367-195 chr2 48979798 48980062 + 2 NA intron (NM_000145, intron 8 of 9) intron (NM_000145, intron 8 of 9) -79673 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 427-175 chr4 37542600 37542882 + 2 NA intron (NM_001104629, intron 1 of 3) MER3|DNA|hAT-Charlie -41492 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 447-215 chr5 105602948 105603320 + 2 NA Intergenic L1PBa|LINE|L1 503660 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 199-239 chr8 88534497 88534631 + 2 NA Intergenic Intergenic -207081 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 363-233 chr2 163166117 163166364 + 2 NA Intergenic L1ME3A|LINE|L1 -327473 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 408-140 chr17 73503586 73503839 + 2 NA intron (NM_001144952, intron 2 of 44) intron (NM_001144952, intron 2 of 44) -9971 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 428-215 chr4 91526869 91527154 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 750291 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 186-116 chr4 23075406 23075528 + 2 NA Intergenic Intergenic 361378 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 640-92 chr4 35618374 35618964 + 2 NA Intergenic Intergenic 625270 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 263-152 chr17 56159330 56159514 + 2 NA intron (NM_153228, intron 1 of 16) intron (NM_153228, intron 1 of 16) 5947 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 376-105 chr14 59727910 59728155 + 2 NA intron (NM_021136, intron 2 of 8) intron (NM_021136, intron 2 of 8) -81012 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 413-185 chr3 54572466 54572710 + 2 NA intron (NM_018398, intron 8 of 37) intron (NM_018398, intron 8 of 37) 67269 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 314-127 chr12 42740677 42740905 + 2 NA Intergenic L1MB1|LINE|L1 48575 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 216-328 chr8 9184901 9185060 + 2 NA Intergenic Intergenic -4019 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 386-65 chr11 130884244 130884454 + 2 NA intron (NM_014758, intron 8 of 10) intron (NM_014758, intron 8 of 10) -14102 NR_125382 103611081 Hs.430300 NR_125382 ENSG00000255455 LOC103611081 - uncharacterized LOC103611081 ncRNA 656-105 chr6 40012716 40013183 + 2 NA Intergenic L1MA4|LINE|L1 -78487 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 469-178 chr3 80012827 80013233 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -245032 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 396-81 chr12 10073471 10073805 + 2 NA intron (NM_001297750, intron 5 of 6) intron (NM_001297750, intron 5 of 6) 25347 NM_001297749 51267 Hs.29549 NM_016511 ENSG00000150048 CLEC1A CLEC-1|CLEC1 C-type lectin domain family 1 member A protein-coding 287-31 chr1 219675764 219675971 + 2 NA Intergenic Intergenic -62722 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 366-67 chr10 115616683 115616970 + 2 NA intron (NM_207303, intron 26 of 28) MSTA-int|LTR|ERVL-MaLR 523461 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 415-224 chr5 143788772 143789059 + 2 NA Intergenic Intergenic -23246 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 332-377 chr4 58201494 58201680 + 2 NA Intergenic Intergenic 334741 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 603-77 chr2 6479348 6479813 + 2 NA Intergenic LTR81B|LTR|Gypsy -104158 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 494-78 chr15 81602233 81602604 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -228205 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 307-67 chr10 88600343 88600576 + 2 NA intron (NM_001010939, intron 8 of 10) L1MEg|LINE|L1 13697 NM_001010939 142910 Hs.440959 NM_001010939 ENSG00000204022 LIPJ LIPL1|bA425M17.2 lipase family member J protein-coding 266-333 chr5 57506137 57506296 + 2 NA Intergenic Intergenic -23405 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 310-345 chr3 137580968 137581188 + 2 NA Intergenic L2a|LINE|L2 -183237 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 272-207 chr2 116228447 116228625 + 2 NA Intergenic Intergenic 884721 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 287-291 chr4 112876134 112876359 + 2 NA intron (NM_001354271, intron 1 of 42) intron (NM_001354271, intron 1 of 42) 15259 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 383-33 chr10 61002002 61002358 + 2 NA promoter-TSS (NM_001350907) promoter-TSS (NM_001350907) -740 NM_001350902 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 265-9 chr1 76758867 76759113 + 2 NA intron (NR_149059, intron 1 of 2) MIR|SINE|MIR 20277 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 417-23 chr1 237087053 237087417 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 45051 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 344-35 chr1 215035504 215035695 + 2 NA intron (NM_001017424, intron 1 of 6) L1MC3|LINE|L1 30057 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 716-82 chr7 42442481 42442878 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -205470 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 733-75 chr7 91711027 91711592 + 2 NA Intergenic L1MA4A|LINE|L1 169393 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 472-326 chr8 122800130 122800489 + 2 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 18654 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 264-197 chr2 41097012 41097268 + 2 NA Intergenic Intergenic -584705 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 293-442 chr8 92645909 92646094 + 2 NA intron (NR_125827, intron 2 of 4) intron (NR_125827, intron 2 of 4) 9493 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 264-101 chr12 127394291 127394541 + 2 NA Intergenic L1MD2|LINE|L1 -54344 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 278-365 chr6 43515584 43515847 + 2 NA intron (NM_015388, intron 2 of 8) intron (NM_015388, intron 2 of 8) 1211 NM_015388 25844 Hs.440950 NM_015388 ENSG00000137207 YIPF3 C6orf109|FinGER3|KLIP1|dJ337H4.3 Yip1 domain family member 3 protein-coding 547-85 chr18 44935582 44935970 + 2 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 34390 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 365-91 chr12 18408363 18408584 + 2 NA intron (NM_001288774, intron 16 of 32) L1PA7|LINE|L1 146933 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 350-575 chrX 100170146 100170467 + 2 NA Intergenic Intergenic 239967 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 467-247 chr6 57250195 57250534 + 2 NA Intergenic L2a|LINE|L2 12982 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 350-307 chr3 49235765 49235950 + 2 NA intron (NM_001135197, intron 2 of 7) AluSx1|SINE|Alu 36359 NM_001135197 339834 Hs.631931 NM_178173 ENSG00000173421 CCDC36 CT74 coiled-coil domain containing 36 protein-coding 232-198 chr2 183499042 183499215 + 2 NA Intergenic L1MA4|LINE|L1 374685 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 378-354 chr5 156715489 156715792 + 2 NA intron (NM_001128209, intron 6 of 7) MIR|SINE|MIR -134655 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 228-326 chr7 115814780 115814953 + 2 NA Intergenic Eulor8|DNA|TcMar? 153447 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 355-460 chr7 42771512 42771861 + 2 NA Intergenic Intergenic -65239 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 263-163 chr18 7243402 7243603 + 2 NA Intergenic Intergenic 12398 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 370-380 chr5 154663487 154663816 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -19328 NM_001367713 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 372-216 chr2 23102274 23102517 + 2 NA Intergenic L1MCb|LINE|L1 -282784 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 481-69 chr12 22823780 22824033 + 2 NA Intergenic L1MEc|LINE|L1 198735 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 516-164 chr3 2450902 2451264 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 212254 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 439-162 chr20 42298485 42298742 + 2 NA intron (NM_133170, intron 12 of 31) L1MC4|LINE|L1 -386870 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 437-277 chr8 98808508 98808849 + 2 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) 16993 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 652-11 chr1 240214656 240215168 + 2 NA intron (NM_020066, intron 6 of 17) AluJb|SINE|Alu 123029 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 207-176 chr22 32719169 32719346 + 2 NA intron (NM_003490, intron 6 of 13) L2a|LINE|L2 -81559 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 370-470 chr9 29344012 29344288 + 2 NA Intergenic L1M8|LINE|L1 -130549 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 182-88 chr2 78286446 78286591 + 2 NA intron (NR_110288, intron 1 of 3) L1ME3Cz|LINE|L1 4213 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 223-35 chr10 52160157 52160329 + 2 NA intron (NM_001098512, intron 8 of 17) intron (NM_001098512, intron 8 of 17) 153885 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 465-292 chr8 102146084 102146441 + 2 NA Intergenic L1MEf|LINE|L1 20830 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 317-28 chr1 182319042 182319284 + 2 NA Intergenic AluJo|SINE|Alu -5102 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 356-358 chr4 46969147 46969413 + 2 NA intron (NM_001204267, intron 6 of 7) intron (NM_001204267, intron 6 of 7) 24301 NM_001204266 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 477-82 chr12 125399889 125400216 + 2 NA intron (NM_052907, intron 2 of 8) intron (NM_052907, intron 2 of 8) 73436 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 512-228 chr5 134830839 134831287 + 2 NA TTS (NR_125341) TTS (NR_125341) -14617 NM_152409 134553 Hs.708536 NM_152409 ENSG00000181904 C5orf24 - chromosome 5 open reading frame 24 protein-coding 430-305 chr8 52142438 52142832 + 2 NA intron (NM_014682, intron 17 of 25) intron (NM_014682, intron 17 of 25) -51727 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 376-260 chr3 139684479 139684766 + 2 NA Intergenic MLT2B3|LTR|ERVL -6572 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 459-17 chr1 187819908 187820290 + 2 NA Intergenic L1PBa|LINE|L1 376471 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 245-326 chr7 44700204 44700365 + 2 NA intron (NM_002541, intron 19 of 22) intron (NM_002541, intron 19 of 22) -48282 NM_001300959 83637 Hs.77978 NM_031449 ENSG00000122515 ZMIZ2 NET27|TRAFIP20|ZIMP7|hZIMP7 zinc finger MIZ-type containing 2 protein-coding 427-231 chr6 130695690 130696081 + 2 NA Intergenic Intergenic -131520 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 412-82 chr13 72527987 72528369 + 2 NA Intergenic Intergenic 199451 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 285-168 chr18 41664708 41664884 + 2 NA Intergenic Intergenic -144119 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 237-57 chr11 74272028 74272199 + 2 NA intron (NR_110031, intron 9 of 11) MIRc|SINE|MIR -39249 NR_120556 101928580 Hs.569025 NR_120556 ENSG00000246211 P4HA3-AS1 - P4HA3 antisense RNA 1 ncRNA 268-33 chr10 21991189 21991388 + 2 NA intron (NM_022365, intron 1 of 11) intron (NM_022365, intron 1 of 11) 12442 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 217-155 chr18 1455443 1455621 + 2 NA Intergenic L1MA2|LINE|L1 -95903 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 272-328 chr5 17856997 17857248 + 2 NA intron (NR_134286, intron 4 of 7) L1M4|LINE|L1 49848 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 557-95 chr2 55761455 55761832 + 2 NA Intergenic X9_LINE|LINE|L1 -67799 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 600-121 chr7 114097144 114097549 + 2 NA intron (NR_033766, intron 1 of 19) L1ME1|LINE|L1 11019 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 250-419 chr8 60034861 60035057 + 2 NA Intergenic L2a|LINE|L2 246441 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 364-485 chrX 96148570 96148927 + 2 NA Intergenic L1MEi|LINE|L1 189154 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 200-267 chr8 50336528 50336676 + 2 NA intron (NR_135797, intron 2 of 20) L2a|LINE|L2 172471 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 403-131 chr17 51555497 51555756 + 2 NA Intergenic Intergenic 120199 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 470-30 chr10 101122894 101123249 + 2 NA intron (NR_130724, intron 2 of 2) intron (NR_130724, intron 2 of 2) 8075 NR_130723 100038246 Hs.368784 NM_001085398 ENSG00000236311 TLX1NB APT-B7|TD1|TDI TLX1 neighbor ncRNA 349-297 chr20 61664953 61665168 + 2 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 54688 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 466-296 chrUn_KI270512v1 6593 6979 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 681-57 chr4 37150950 37151398 + 2 NA Intergenic L1MA1|LINE|L1 90817 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 353-451 chr6 62296210 62296497 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -10126 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 421-158 chr2 220287040 220287335 + 2 NA Intergenic Intergenic -380622 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 324-63 chr10 76845951 76846150 + 2 NA Intergenic L1M1|LINE|L1 -41994 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 324-26 chr1 163373548 163373755 + 2 NA Intergenic Intergenic 49540 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 399-319 chr8 138887828 138888147 + 2 NA intron (NM_152888, intron 1 of 64) L1ME4a|LINE|L1 26054 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 736-90 chr8 137354381 137354887 + 2 NA Intergenic Intergenic 58954 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 314-215 chr16 76859025 76859260 + 2 NA Intergenic L1PBa|LINE|L1 -9794 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 443-231 chr4 166711078 166711467 + 2 NA Intergenic L1M3de|LINE|L1 523154 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 421-28 chr10 62867216 62867573 + 2 NA Intergenic Intergenic -48227 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 245-261 chr4 107048582 107048809 + 2 NA Intergenic L1M5|LINE|L1 -12382 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 240-382 chr6 95964752 95964976 + 2 NA Intergenic Intergenic -51110 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 399-32 chr10 33150931 33151164 + 2 NA Intergenic Intergenic -34240 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 254-192 chr2 115271612 115271817 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -37523 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 266-400 chr7 89619679 89619872 + 2 NA Intergenic Intergenic -499625 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 213-55 chr11 63522649 63522847 + 2 NA Intergenic L1MC5|LINE|L1 -14060 NM_004585 5920 Hs.17466 NM_004585 ENSG00000133321 PLAAT4 HRASLS4|HRSL4|PLA1/2-3|PLAAT-4|RARRES3|RIG1|TIG3 phospholipase A and acyltransferase 4 protein-coding 437-305 chrX 135315641 135315910 + 2 NA intron (NM_007131, intron 1 of 6) L1MA4A|LINE|L1 6295 NM_001358449 110806299 NM_001358449 ENSG00000283644 ETDC - embryonic testis differentiation homolog C protein-coding 525-187 chr5 2623525 2623931 + 2 NA Intergenic Intergenic -88863 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 440-244 chr8 71144132 71144457 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 212412 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 267-188 chr2 66933412 66933629 + 2 NA intron (NR_110169, intron 2 of 4) intron (NR_110169, intron 2 of 4) -11030 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 755-54 chr5 96079356 96079891 + 2 NA TTS (NR_030309) TTS (NR_030309) 485 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 421-3 chr1 8738425 8738779 + 2 NA intron (NM_001042681, intron 1 of 22) intron (NM_001042681, intron 1 of 22) 79038 NM_001042681 473 Hs.463041 NM_012102 ENSG00000142599 RERE ARG|ARP|ATN1L|DNB1|NEDBEH arginine-glutamic acid dipeptide repeats protein-coding 249-58 chr10 89339626 89339834 + 2 NA exon (NM_001549, exon 2 of 2) exon (NM_001549, exon 2 of 2) 7201 NM_001031683 3437 Hs.47338 NM_001549 ENSG00000119917 IFIT3 CIG-49|GARG-49|IFI60|IFIT4|IRG2|ISG60|P60|RIG-G|cig41 interferon induced protein with tetratricopeptide repeats 3 protein-coding 339-201 chr16 66071736 66071972 + 2 NA Intergenic L1ME2|LINE|L1 -294837 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 288-394 chr7 7915108 7915282 + 2 NA Intergenic L2b|LINE|L2 53557 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 223-15 chr1 165333421 165333597 + 2 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 22732 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 600-56 chr2 7636212 7636701 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 215195 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 536-84 chr15 97985944 97986370 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -16881 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 271-165 chr17 61027357 61027532 + 2 NA intron (NM_001330413, intron 17 of 25) intron (NM_001330413, intron 17 of 25) 340260 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 388-301 chr6 47882752 47883104 + 2 NA intron (NM_001013732, intron 2 of 2) intron (NM_001013732, intron 2 of 2) 95860 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 350-171 chr16 83193603 83193904 + 2 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -203455 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 473-145 chr2 173549981 173550343 + 2 NA Intergenic Intergenic 195290 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 235-219 chr22 32098643 32098770 + 2 NA intron (NM_000343, intron 11 of 14) intron (NM_000343, intron 11 of 14) -23271 NR_040114 23782 Hs.581098 NR_040114 ENSG00000234479 AP1B1P1 ADTB1L1|dJ127L4.2 AP1B1 pseudogene 1 pseudo 324-435 chr5 121444189 121444416 + 2 NA Intergenic Intergenic 121752 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 279-136 chr17 52648951 52649187 + 2 NA Intergenic Intergenic -213052 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 164-75 chr3 36628041 36628156 + 2 NA Intergenic AluJb|SINE|Alu 111763 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 675-83 chr6 143903398 143903868 + 2 NA intron (NM_001013623, intron 6 of 7) MER47C|DNA|TcMar-Tigger 39159 NM_001013623 153918 Hs.121188 NM_001013623 ENSG00000118491 ZC2HC1B C6orf94|FAM164B|dJ468K18.5 zinc finger C2HC-type containing 1B protein-coding 241-357 chr7 21127016 21127228 + 2 NA Intergenic Intergenic 291691 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 294-366 chr5 26495333 26495545 + 2 NA Intergenic LTR35A|LTR|ERV1 543147 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 240-95 chr12 972300 972508 + 2 NA intron (NM_001297419, intron 1 of 11) L2a|LINE|L2 17637 NM_001297419 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 350-93 chr12 29695516 29695790 + 2 NA intron (NM_001367875, intron 5 of 19) MLT1D|LTR|ERVL-MaLR 88289 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 311-28 chr1 174523703 174523867 + 2 NA intron (NM_001366446, intron 13 of 25) L1MA4A|LINE|L1 75821 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 132-58 chr5 15006015 15006126 + 2 NA Intergenic L2b|LINE|L2 -134292 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 640-69 chr2 225563664 225564232 + 2 NA intron (NM_001371273, intron 4 of 7) intron (NM_001371273, intron 4 of 7) 163062 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 195-39 chr11 93861239 93861419 + 2 NA Intergenic LTR24C|LTR|ERV1 -10711 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 209-273 chr6 64820957 64821131 + 2 NA intron (NM_001292009, intron 21 of 43) intron (NM_001292009, intron 21 of 43) -480374 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 386-186 chr2 153496537 153496769 + 2 NA Intergenic Intergenic -17891 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 450-128 chr19 37787599 37787982 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -8200 NM_152360 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 256-146 chr15 99742036 99742188 + 2 NA Intergenic Intergenic -8668 NM_001284422 145748 Hs.562568 NM_152449 ENSG00000183060 LYSMD4 - LysM domain containing 4 protein-coding 224-36 chr10 82365444 82365613 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -132608 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 429-244 chr5 127285954 127286338 + 2 NA Intergenic L1MA4A|LINE|L1 -4618 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 331-574 chrX 93980328 93980594 + 2 NA Intergenic Intergenic 306255 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 405-98 chr15 87193776 87194084 + 2 NA Intergenic Intergenic -205504 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 162-39 chr15 76599043 76599191 + 2 NA intron (NR_148227, intron 22 of 32) L1ME2z|LINE|L1 12470 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 272-221 chr2 173068917 173069101 + 2 NA Intergenic MIRb|SINE|MIR -6837 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 447-3 chr1 66441265 66441565 + 2 NA Intergenic L1MC4a|LINE|L1 86880 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 146-21 chr12 78034852 78034940 + 2 NA intron (NM_001024383, intron 9 of 39) intron (NM_001024383, intron 9 of 39) 204002 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 256-363 chr6 85822731 85822924 + 2 NA Intergenic L1M2|LINE|L1 -144094 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 310-217 chr19 55425930 55426154 + 2 NA Intergenic Intergenic 16821 NM_001145176 729956 Hs.6664 NM_175908 ENSG00000187902 SHISA7 - shisa family member 7 protein-coding 620-95 chr3 187125208 187125685 + 2 NA intron (NM_052969, intron 2 of 2) intron (NM_052969, intron 2 of 2) 14050 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 283-34 chr1 213436924 213437163 + 2 NA Intergenic L1MEg|LINE|L1 385802 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 319-515 chr8 9478892 9479122 + 2 NA Intergenic MER33|DNA|hAT-Charlie -76905 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 308-346 chr4 91007892 91008177 + 2 NA intron (NM_001145065, intron 9 of 10) L1M2a|LINE|L1 773003 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 274-231 chr20 13310041 13310204 + 2 NA Intergenic L1MA7|LINE|L1 -70435 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 370-8 chr1 78819841 78820069 + 2 NA Intergenic Intergenic 170124 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 718-51 chr3 9209048 9209620 + 2 NA intron (NM_014850, intron 1 of 21) L1MB7|LINE|L1 -7561 NR_103443 100288831 Hs.694646 NR_103443 ENSG00000227929 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 115-28 chr3 110033513 110033577 + 2 NA Intergenic L1M3f|LINE|L1 430717 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 483-37 chr11 31901928 31902252 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 75523 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 250-69 chr11 63495432 63495636 + 2 NA Intergenic Intergenic -4367 NM_054108 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 517-23 chr1 238765475 238765901 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -279671 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 282-42 chr10 39117515 39117735 + 2 NA Intergenic ALR/Alpha|Satellite|centr 421029 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 549-169 chr5 87686185 87686554 + 2 NA Intergenic Intergenic 24327 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 245-55 chr10 76310692 76310857 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 528013 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 556-138 chr22 47897318 47897699 + 2 NA Intergenic L1ME3A|LINE|L1 265834 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 152-60 chr21 29311265 29311370 + 2 NA intron (NR_027655, intron 1 of 7) intron (NR_027655, intron 1 of 7) 6113 NR_027655 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 615-62 chr2 64031216 64031594 + 2 NA Intergenic AluSc|SINE|Alu -11977 NM_016516 51542 Hs.48499 NM_016516 ENSG00000143952 VPS54 HCC8|PPP1R164|SLP-8p|VPS54L|WR|hVps54L VPS54 subunit of GARP complex protein-coding 427-179 chr4 55238457 55238800 + 2 NA Intergenic L1MA7|LINE|L1 -107614 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 293-219 chr2 198024341 198024505 + 2 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 219830 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 258-429 chr9 105992022 105992249 + 2 NA Intergenic Intergenic 297594 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 317-505 chr8 130722172 130722459 + 2 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR -278641 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 238-223 chr22 34542692 34542888 + 2 NA Intergenic L1ME1|LINE|L1 455126 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 494-125 chr2 52647279 52647638 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 55157 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 333-44 chr1 227602819 227603095 + 2 NA intron (NR_102302, intron 2 of 5) FAM|SINE|Alu 39401 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 321-98 chr11 41626403 41626564 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -88085 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 492-65 chr12 84633781 84634263 + 2 NA Intergenic L1ME1|LINE|L1 278777 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 334-471 chr6 134935447 134935744 + 2 NA intron (NM_001193480, intron 3 of 5) intron (NM_001193480, intron 3 of 5) 14506 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 267-413 chr8 43846037 43846197 + 2 NA Intergenic ALR/Alpha|Satellite|centr 553675 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 342-562 chr9 117482826 117483152 + 2 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -67932 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 206-86 chr16 19328267 19328432 + 2 NA Intergenic L1M4|LINE|L1 42618 NM_001256720 728276 Hs.632180 NM_001256720 ENSG00000261210 CLEC19A - C-type lectin domain containing 19A protein-coding 356-49 chr10 52667628 52667817 + 2 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 87682 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 604-179 chrX 68961894 68962422 + 2 NA Intergenic L1MD2|LINE|L1 133161 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 337-14 chr1 96178871 96179066 + 2 NA Intergenic Intergenic 186900 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 332-235 chr2 249817 250044 + 2 NA intron (NM_015677, intron 2 of 9) intron (NM_015677, intron 2 of 9) 6410 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 265-378 chr7 154269713 154269915 + 2 NA intron (NM_130797, intron 1 of 25) intron (NM_130797, intron 1 of 25) -35345 NM_001290252 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 318-476 chr6 56152128 56152303 + 2 NA intron (NR_134849, intron 10 of 29) MLT1D|LTR|ERVL-MaLR -60553 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 504-177 chr3 192090384 192090781 + 2 NA Intergenic L1ME1|LINE|L1 -148048 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 268-163 chr18 45930933 45931132 + 2 NA intron (NM_020964, intron 11 of 43) MIRc|SINE|MIR 36297 NM_020964 57724 Hs.514843 NM_020964 ENSG00000152223 EPG5 HEEW1|KIAA1632|VICIS ectopic P-granules autophagy protein 5 homolog protein-coding 355-273 chr2 230508594 230508834 + 2 NA TTS (NM_001206701) TTS (NM_001206701) 91958 NM_001206704 6672 Hs.369056 NM_003113 ENSG00000067066 SP100 lysp100b SP100 nuclear antigen protein-coding 576-40 chr13 63613224 63613609 + 2 NA Intergenic Intergenic -124019 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 294-11 chr1 111421729 111421903 + 2 NA intron (NM_002557, intron 6 of 10) intron (NM_002557, intron 6 of 10) 5919 NM_002557 5016 Hs.1154 NM_002557 ENSG00000085465 OVGP1 CHIT5|EGP|MUC9|OGP oviductal glycoprotein 1 protein-coding 224-240 chr5 17405083 17405287 + 2 NA intron (NR_134274, intron 1 of 1) intron (NR_134274, intron 1 of 1) 1039 NR_134274 101929544 Hs.23725 NR_134273 ENSG00000248455 LINC02217 - long intergenic non-protein coding RNA 2217 ncRNA 419-268 chr7 25876574 25876950 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 73224 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 454-267 chr6 677496 677898 + 2 NA intron (NR_073064, intron 2 of 29) AluSg|SINE|Alu 15442 NM_018303 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 588-75 chr2 146726110 146726493 + 2 NA Intergenic AluY|SINE|Alu 139244 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 273-277 chr22 27087761 27087943 + 2 NA Intergenic MIR|SINE|MIR -27334 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 359-521 chrX 65367872 65368098 + 2 NA Intergenic Intergenic -120750 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 306-547 chr9 78484287 78484540 + 2 NA Intergenic Intergenic 187288 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 159-48 chr2 240083617 240083741 + 2 NA Intergenic L1ME3G|LINE|L1 -37607 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 291-317 chr4 45924642 45924882 + 2 NA Intergenic L2a|LINE|L2 199292 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 268-23 chr1 225122117 225122333 + 2 NA intron (NM_001367479, intron 26 of 85) HAL1ME|LINE|L1 192550 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 704-23 chr13 88507210 88507868 + 2 NA Intergenic Intergenic -33290 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 144-7 chr1 114462590 114462696 + 2 NA intron (NM_015906, intron 4 of 19) intron (NM_015906, intron 4 of 19) 48560 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 269-92 chr12 76266917 76267153 + 2 NA intron (NR_146531, intron 1 of 3) intron (NR_146531, intron 1 of 3) 7152 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 288-216 chr2 186424758 186425022 + 2 NA Intergenic MLT2B4|LTR|ERVL -61370 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 323-415 chr5 73079920 73080136 + 2 NA intron (NM_001146032, intron 21 of 24) intron (NM_001146032, intron 21 of 24) -40547 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 365-239 chr20 59799708 59799912 + 2 NA intron (NM_080672, intron 7 of 12) L1MEc|LINE|L1 78600 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 414-211 chr3 79229935 79230189 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -181665 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 255-430 chr8 109140515 109140707 + 2 NA Intergenic Intergenic 53983 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 353-213 chr18 61153364 61153560 + 2 NA Intergenic Intergenic -179968 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 313-418 chr5 15415092 15415254 + 2 NA Intergenic L1PB1|LINE|L1 -85007 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 444-79 chr16 5050942 5051304 + 2 NA intron (NM_001098514, intron 6 of 7) L1MA5|LINE|L1 15022 NM_001098514 146556 Hs.11782 NM_152459 ENSG00000153446 C16orf89 - chromosome 16 open reading frame 89 protein-coding 164-116 chr8 133419924 133420060 + 2 NA Intergenic Intergenic -122688 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 244-280 chr4 156999967 157000185 + 2 NA Intergenic L3|LINE|CR1 -28277 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 296-190 chr18 1822118 1822363 + 2 NA Intergenic L1MC4|LINE|L1 -462611 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 336-164 chr14 54049473 54049697 + 2 NA Intergenic Intergenic -92694 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 312-423 chr5 104621638 104621896 + 2 NA Intergenic Intergenic -477707 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 417-153 chr2 145415896 145416243 + 2 NA Intergenic L1MCc|LINE|L1 748102 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 522-77 chr14 51813885 51814367 + 2 NA Intergenic MIR|SINE|MIR -46486 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 655-117 chr8 15102062 15102560 + 2 NA intron (NM_139167, intron 1 of 7) L1MC2|LINE|L1 136120 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 640-100 chr4 123990116 123990568 + 2 NA Intergenic Intergenic 216078 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 262-433 chr8 116513996 116514209 + 2 NA Intergenic Intergenic -137998 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 394-197 chr2 210180978 210181225 + 2 NA Intergenic L1PA7|LINE|L1 -9692 NM_152519 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 311-315 chr21 16004362 16004523 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger -66046 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 388-22 chr1 189869665 189869933 + 2 NA Intergenic Intergenic 606211 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 295-382 chr5 89123701 89123972 + 2 NA intron (NR_136221, intron 4 of 6) intron (NR_136221, intron 4 of 6) -219731 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 338-322 chr3 2430782 2431090 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 192107 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 329-601 chr8 144590040 144590359 + 2 NA intron (NM_025251, intron 1 of 10) intron (NM_025251, intron 1 of 10) 15496 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 246-107 chr13 84007336 84007527 + 2 NA Intergenic Intergenic -124957 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 233-398 chr9 71435883 71436072 + 2 NA intron (NM_001366143, intron 1 of 25) THE1A|LTR|ERVL-MaLR 10994 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 467-9 chr1 82017626 82018068 + 2 NA Intergenic Intergenic 215394 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 247-414 chr8 109142190 109142408 + 2 NA Intergenic Intergenic 55671 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 220-247 chr3 191569965 191570120 + 2 NA intron (NR_120606, intron 5 of 6) L1M5|LINE|L1 108879 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 333-398 chr4 74019727 74020025 + 2 NA Intergenic Intergenic 18813 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 461-293 chr9 91985538 91985966 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -35524 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 345-71 chr10 82983644 82983895 + 2 NA intron (NR_163253, intron 10 of 10) intron (NR_163253, intron 10 of 10) 693320 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 212-201 chr22 40923973 40924111 + 2 NA intron (NM_022098, intron 8 of 9) (T)n|Simple_repeat|Simple_repeat -27336 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 378-245 chr2 145422450 145422750 + 2 NA Intergenic L1MA9|LINE|L1 754633 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 387-207 chr20 52832102 52832305 + 2 NA Intergenic Intergenic -140155 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 317-103 chr12 13638938 13639180 + 2 NA intron (NM_000834, intron 4 of 12) MIRb|SINE|MIR -262314 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 247-223 chr2 192360896 192361118 + 2 NA Intergenic Intergenic -166074 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 366-317 chr4 91533829 91534182 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 743297 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 337-270 chr2 127727122 127727376 + 2 NA intron (NM_018383, intron 7 of 21) intron (NM_018383, intron 7 of 21) 25752 NM_032740 84826 Hs.345849 NM_032740 ENSG00000173349 SFT2D3 - SFT2 domain containing 3 protein-coding 520-282 chr7 69174694 69175004 + 2 NA Intergenic AluSz|SINE|Alu 422775 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 427-242 chr7 31419035 31419413 + 2 NA Intergenic MIR|SINE|MIR -78498 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 542-174 chr5 105922522 105922913 + 2 NA Intergenic Intergenic 823243 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 412-3 chr1 18377210 18377441 + 2 NA intron (NM_032880, intron 8 of 9) intron (NM_032880, intron 8 of 9) -103605 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 137-42 chr2 54984604 54984679 + 2 NA intron (NM_020532, intron 4 of 8) intron (NM_020532, intron 4 of 8) 25631 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 257-435 chr9 28270851 28271008 + 2 NA intron (NM_152570, intron 5 of 6) MIRb|SINE|MIR 448376 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 271-399 chr7 22985077 22985294 + 2 NA intron (NM_032581, intron 2 of 10) intron (NM_032581, intron 2 of 10) 28945 NM_001363466 84668 Hs.85603 NM_032581 ENSG00000122591 FAM126A DRCTNNB1A|HCC|HLD5|HYCC1 family with sequence similarity 126 member A protein-coding 385-30 chr10 54277298 54277527 + 2 NA intron (NM_001354411, intron 8 of 34) MLT1I-int|LTR|ERVL-MaLR -208818 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 297-204 chr2 29443876 29444043 + 2 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 31418 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 553-215 chr7 52403872 52404416 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -631489 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 353-496 chr7 94765666 94766004 + 2 NA Intergenic L1MC4a|LINE|L1 109465 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 568-116 chr2 158964367 158964884 + 2 NA Intergenic MIRc|SINE|MIR -4009 NM_001350062 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 308-506 chr8 117739404 117739568 + 2 NA Intergenic Intergenic 181427 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 284-88 chr12 47483577 47483803 + 2 NA Intergenic L1M5|LINE|L1 68682 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 559-73 chr17 54581132 54581601 + 2 NA Intergenic L1PREC2|LINE|L1 -319325 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 500-289 chr8 64174259 64174720 + 2 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 194069 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 256-168 chr17 70827536 70827705 + 2 NA Intergenic L1PA4|LINE|L1 374559 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 350-297 chr22 48744399 48744584 + 2 NA intron (NM_001082967, intron 3 of 3) intron (NM_001082967, intron 3 of 3) -35804 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 539-5 chr1 49644349 49644851 + 2 NA intron (NR_136623, intron 2 of 12) L1ME2|LINE|L1 -172515 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 426-297 chr8 88282752 88283024 + 2 NA intron (NM_005941, intron 1 of 9) L1M4|LINE|L1 44595 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 607-86 chr20 6727239 6727684 + 2 NA Intergenic AluJr|SINE|Alu 8675 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 226-178 chr2 123055175 123055352 + 2 NA Intergenic L1M4c|LINE|L1 18218 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 264-166 chr17 57990765 57990965 + 2 NA Intergenic MIRb|SINE|MIR -2611 NM_007146 7716 Hs.463569 NM_007146 ENSG00000136451 VEZF1 DB1|ZNF161 vascular endothelial zinc finger 1 protein-coding 282-153 chr16 5230020 5230262 + 2 NA Intergenic AluJb|SINE|Alu -132321 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 352-154 chr14 83374346 83374623 + 2 NA Intergenic L1MB5|LINE|L1 731852 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 589-175 chrX 145788385 145788931 + 2 NA Intergenic Intergenic -29171 NM_001144003 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 517-272 chr8 118874828 118875320 + 2 NA Intergenic Intergenic 76811 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 303-430 chr7 93316656 93316911 + 2 NA intron (NM_001257998, intron 21 of 28) L2c|LINE|L2 84417 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 286-178 chr19 28080982 28081177 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -287139 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 121-62 chr7 77405961 77406030 + 2 NA intron (NR_146937, intron 2 of 31) intron (NR_146937, intron 2 of 31) -9203 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 261-132 chr16 72766136 72766365 + 2 NA Intergenic Intergenic -101280 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 234-279 chr4 104625160 104625329 + 2 NA intron (NR_125926, intron 1 of 9) MLT1B|LTR|ERVL-MaLR -130350 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 196-231 chr6 164731341 164731497 + 2 NA Intergenic Intergenic 90644 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 319-258 chr2 128991986 128992233 + 2 NA Intergenic L1MD1|LINE|L1 127509 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 236-362 chr8 115163935 115164108 + 2 NA Intergenic Intergenic 503992 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 312-292 chr20 40858660 40858836 + 2 NA Intergenic Intergenic -121965 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 214-315 chr8 52455558 52455736 + 2 NA Intergenic L1ME2z|LINE|L1 -45768 NM_001352879 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 317-210 chr19 57473487 57473766 + 2 NA exon (NM_001330613, exon 3 of 3) exon (NM_001330613, exon 3 of 3) 3940 NM_001330613 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 327-311 chr21 31845016 31845224 + 2 NA Intergenic Intergenic -27900 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 296-330 chr4 31787506 31787654 + 2 NA Intergenic Intergenic -209799 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 272-101 chr13 39884695 39884842 + 2 NA Intergenic L1M4|LINE|L1 -220633 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 890-17 chr2 39554811 39555378 + 2 NA intron (NR_037875, intron 5 of 5) ERVL-int|LTR|ERVL -110404 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 395-341 chr8 105476025 105476399 + 2 NA intron (NM_001362837, intron 3 of 7) MER1B|DNA|hAT-Charlie 156669 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 492-241 chr7 51911406 51911763 + 2 NA Intergenic Intergenic -518328 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 460-64 chr12 44978568 44978892 + 2 NA Intergenic Intergenic -64802 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 742-5 chr1 111108649 111109359 + 2 NA Intergenic L1MA4|LINE|L1 -30379 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 337-127 chr12 126753412 126753669 + 2 NA intron (NR_033878, intron 1 of 4) intron (NR_033878, intron 1 of 4) 16533 NR_038256 100507206 Hs.662298 NR_038256 LINC00943 - long intergenic non-protein coding RNA 943 ncRNA 393-397 chrX 152981453 152981793 + 2 NA Intergenic MLT2B2|LTR|ERVL 10590 NM_052926 114824 Hs.573567 NM_052926 ENSG00000198883 PNMA5 - PNMA family member 5 protein-coding 296-141 chr14 63725517 63725794 + 2 NA intron (NM_030791, intron 1 of 2).2 intron (NM_030791, intron 1 of 2).2 2410 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 134-94 chr9 113488490 113488601 + 2 NA intron (NM_001282923, intron 5 of 22) intron (NM_001282923, intron 5 of 22) -12882 NM_001322214 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 143-85 chr8 120973462 120973599 + 2 NA Intergenic Intergenic -161484 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 377-204 chr2 79763607 79763830 + 2 NA intron (NM_001282598, intron 3 of 17) MIR3|SINE|MIR 102865 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 231-157 chr2 39968652 39968859 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 51121 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 185-108 chr2 179337773 179337923 + 2 NA Intergenic AluSx1|SINE|Alu -73016 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 356-75 chr11 28268273 28268567 + 2 NA intron (NM_001113528, intron 4 of 6) intron (NM_001113528, intron 4 of 6) 160032 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 248-353 chr6 79154914 79155133 + 2 NA Intergenic HAL1ME|LINE|L1 -76769 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 245-286 chr5 88152280 88152452 + 2 NA Intergenic Intergenic 116479 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 138-8 chr10 32173713 32173828 + 2 NA Intergenic L1MB5|LINE|L1 -117345 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 368-4 chr1 42209291 42209553 + 2 NA intron (NM_001198850, intron 5 of 12) L1PBb|LINE|L1 -44677 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 449-167 chr3 80225766 80226068 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -457919 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 242-290 chr5 13878071 13878254 + 2 NA intron (NM_001369, intron 21 of 78) L1M3de|LINE|L1 66318 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 222-256 chr3 185104878 185105068 + 2 NA intron (NM_001025266, intron 1 of 1) L1MEc|LINE|L1 48087 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 335-429 chr5 91545490 91545747 + 2 NA Intergenic L1MB4|LINE|L1 -162301 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 244-355 chr8 18376185 18376411 + 2 NA Intergenic L1MA4|LINE|L1 -14984 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 287-39 chr1 239936049 239936283 + 2 NA Intergenic Intergenic -36294 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 423-122 chr2 6151779 6152169 + 2 NA Intergenic Intergenic 169996 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 258-113 chr14 28426417 28426626 + 2 NA Intergenic L1MEg|LINE|L1 338798 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 296-312 chr3 156171290 156171481 + 2 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) 28423 NM_003471 7881 Hs.654519 NM_003471 ENSG00000169282 KCNAB1 AKR6A3|KCNA1B|KV-BETA-1|Kvb1.3|hKvBeta3|hKvb3 potassium voltage-gated channel subfamily A member regulatory beta subunit 1 protein-coding 723-16 chr10 83498431 83498802 + 2 NA Intergenic L1ME3Cz|LINE|L1 178473 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 196-254 chr8 111809173 111809278 + 2 NA Intergenic L1MD2|LINE|L1 432586 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 272-425 chr7 68548696 68548882 + 2 NA Intergenic AluSx|SINE|Alu 528536 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 461-107 chr17 77925977 77926316 + 2 NA Intergenic Intergenic -42059 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 200-68 chr14 33857304 33857488 + 2 NA Intergenic MIRb|SINE|MIR 93678 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 238-246 chr3 125304777 125304982 + 2 NA intron (NM_001348436, intron 5 of 8) L1MC4|LINE|L1 52401 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 264-90 chr12 39477991 39478193 + 2 NA Intergenic L1MEd|LINE|L1 -34972 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 523-84 chr15 33040358 33040724 + 2 NA intron (NM_001277313, intron 6 of 20) intron (NM_001277313, intron 6 of 20) 27633 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 202-265 chr8 136827518 136827695 + 2 NA intron (NR_147196, intron 4 of 5) L2c|LINE|L2 296808 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 491-192 chr4 126080424 126080760 + 2 NA Intergenic Intergenic 573333 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 363-266 chr20 61678152 61678446 + 2 NA intron (NM_001252339, intron 1 of 14) (GATA)n|Simple_repeat|Simple_repeat 41449 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 300-456 chr8 59176832 59177024 + 2 NA Intergenic Intergenic 57718 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 543-86 chr16 13981027 13981540 + 2 NA Intergenic AluSx|SINE|Alu 34735 NR_110909 101927311 NR_110909 ENSG00000262097 LINC02185 - long intergenic non-protein coding RNA 2185 ncRNA 217-59 chr11 22531213 22531423 + 2 NA Intergenic Intergenic -39299 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 638-39 chr14 66399106 66399698 + 2 NA Intergenic Intergenic -86969 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 413-313 chr8 122355038 122355320 + 2 NA Intergenic Intergenic 213465 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 143-45 chr2 139895597 139895706 + 2 NA Intergenic Intergenic 691034 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 426-290 chr8 67822448 67822776 + 2 NA Intergenic MER92-int|LTR|ERV1 -76252 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 279-338 chr5 114167925 114168150 + 2 NA Intergenic L1ME2|LINE|L1 -194033 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 250-202 chr2 52795468 52795613 + 2 NA Intergenic L1ME1|LINE|L1 -92925 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 471-170 chr3 97199360 97199668 + 2 NA intron (NM_001080448, intron 3 of 17) MER5B|DNA|hAT-Charlie -240093 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 273-235 chr2 142574634 142574877 + 2 NA Intergenic Intergenic -302909 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 316-559 chr8 109416220 109416392 + 2 NA intron (NM_177531, intron 21 of 77) intron (NM_177531, intron 21 of 77) 53845 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 649-105 chr8 40521875 40522449 + 2 NA Intergenic L1MA6|LINE|L1 -178799 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 274-344 chr7 4470461 4470679 + 2 NA Intergenic AluSq2|SINE|Alu -211725 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 272-41 chr10 32478420 32478669 + 2 NA intron (NR_109826, intron 9 of 16) L1MC2|LINE|L1 32404 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 433-240 chr6 39603987 39604389 + 2 NA intron (NM_001289020, intron 6 of 21) L4_C_Mam|LINE|RTE-X 121220 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 450-312 chr8 131369861 131370213 + 2 NA Intergenic Intergenic -329128 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 320-399 chr4 110596455 110596658 + 2 NA intron (NR_147203, intron 1 of 1) MLT1F-int|LTR|ERVL-MaLR 18902 NR_147203 110231149 Hs.436030 NR_147203 ENSG00000250103 PANCR - PITX2 adjacent non-coding RNA ncRNA 364-174 chr17 71006748 71007091 + 2 NA Intergenic Intergenic 195260 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 193-146 chr3 193054988 193055150 + 2 NA Intergenic Intergenic -137213 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 375-232 chr20 61535 61751 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -26029 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 318-123 chr11 133395165 133395427 + 2 NA intron (NM_001012393, intron 1 of 7) L1MA4|LINE|L1 137205 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 178-56 chr18 65973104 65973264 + 2 NA Intergenic Intergenic 222172 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 217-347 chr7 31031804 31032003 + 2 NA Intergenic MER33|DNA|hAT-Charlie -20405 NM_001199637 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 275-241 chr3 10870736 10870990 + 2 NA intron (NM_014229, intron 5 of 13) Tigger8|DNA|TcMar-Tigger 54635 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 300-485 chr9 8256651 8256846 + 2 NA Intergenic L1M7|LINE|L1 -456970 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 324-96 chr11 83901949 83902147 + 2 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -219623 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 247-160 chr17 65646571 65646746 + 2 NA intron (NM_001353129, intron 24 of 26) MIR|SINE|MIR -85010 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 328-240 chr19 53456605 53456842 + 2 NA exon (NM_001008401, exon 6 of 6) exon (NM_001008401, exon 6 of 6) 10496 NM_001289953 388561 Hs.433293 NM_001008401 ENSG00000160336 ZNF761 ZNF468 zinc finger protein 761 protein-coding 241-160 chr18 73787806 73787968 + 2 NA Intergenic Intergenic 359947 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 151-7 chr1 215795884 215795977 + 2 NA intron (NM_206933, intron 50 of 71) Charlie1b|DNA|hAT-Charlie 228626 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 318-397 chr4 55642697 55642970 + 2 NA Intergenic Intergenic -6040 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 219-146 chr18 59835920 59836101 + 2 NA Intergenic L2b|LINE|L2 -63986 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 226-221 chr3 44715460 44715615 + 2 NA intron (NM_033210, intron 2 of 3) intron (NM_033210, intron 2 of 3) 2877 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 215-20 chr1 219725436 219725614 + 2 NA Intergenic L1M2c|LINE|L1 -112380 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 188-126 chr3 18458204 18458383 + 2 NA intron (NR_125803, intron 1 of 6) intron (NR_125803, intron 1 of 6) -12701 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 323-473 chr6 140879906 140880163 + 2 NA Intergenic Intergenic 196220 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 186-89 chr2 172891313 172891441 + 2 NA intron (NM_001282899, intron 1 of 27) intron (NM_001282899, intron 1 of 27) 31339 NM_001282899 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 156-59 chr20 17907252 17907367 + 2 NA Intergenic Intergenic 55637 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 395-142 chr18 7295293 7295629 + 2 NA Intergenic L1MB7|LINE|L1 64357 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 335-534 chr8 82712708 82712888 + 2 NA Intergenic Intergenic -199306 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 396-2 chr1 5713560 5713903 + 2 NA Intergenic Intergenic 149010 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 570-158 chr5 72487569 72487949 + 2 NA intron (NM_152625, intron 1 of 4) intron (NM_152625, intron 1 of 4) 19651 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 279-18 chr1 114985292 114985468 + 2 NA intron (NM_001282542, intron 29 of 30) intron (NM_001282542, intron 29 of 30) -44444 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 217-14 chr1 111612142 111612295 + 2 NA intron (NM_001370216, intron 1 of 7) intron (NM_001370216, intron 1 of 7) -3900 NR_034126 100129269 Hs.689728 NR_034126 LINC01160 - long intergenic non-protein coding RNA 1160 ncRNA 424-258 chr7 51780667 51781018 + 2 NA Intergenic Intergenic -387586 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 195-21 chr10 44066272 44066459 + 2 NA Intergenic Intergenic 153963 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 200-121 chr2 24354602 24354773 + 2 NA intron (NM_001348182, intron 1 of 38) MIR|SINE|MIR 5849 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 304-427 chr5 110804180 110804381 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 65273 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 209-285 chr6 165479577 165479752 + 2 NA intron (NM_006661, intron 4 of 22) L2a|LINE|L2 -170059 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 358-525 chrX 62739364 62739568 + 2 NA Intergenic ALR/Alpha|Satellite|centr 611866 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 297-423 chr6 161315978 161316145 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -42000 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 214-101 chr14 78624156 78624287 + 2 NA intron (NM_004796, intron 1 of 16) MamTip2|DNA|hAT-Tip100 220502 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 490-148 chr2 100160618 100160952 + 2 NA Intergenic Intergenic -18195 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 362-373 chr6 26648339 26648570 + 2 NA intron (NM_001242799, intron 1 of 2) L1MC1|LINE|L1 11292 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 213-27 chr10 19310725 19310915 + 2 NA intron (NM_001142308, intron 21 of 39) intron (NM_001142308, intron 21 of 39) 262019 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 316-500 chr6 164633047 164633285 + 2 NA Intergenic L1MA9|LINE|L1 188897 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 318-118 chr11 114333907 114334110 + 2 NA Intergenic L1MC1|LINE|L1 38195 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 316-178 chr14 87444912 87445160 + 2 NA Intergenic Intergenic 210258 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 558-138 chr3 104122390 104122764 + 2 NA Intergenic Intergenic -598461 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 301-428 chr7 90512109 90512274 + 2 NA intron (NM_001365443, intron 6 of 6) L2a|LINE|L2 42552 NM_001365443 102723899 Hs.731917 NM_001365443 LOC102723899 - uncharacterized LOC102723899 protein-coding 209-345 chr9 77385863 77386067 + 2 NA TTS (NM_015186) TTS (NM_015186) -61684 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 490-114 chr18 11166414 11166779 + 2 NA Intergenic Intergenic -17834 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 419-118 chr18 7691164 7691393 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 123962 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 155-97 chr8 104408352 104408470 + 2 NA intron (NM_001385, intron 7 of 9) L1M|LINE|L1 58644 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 358-185 chr19 57565526 57565877 + 2 NA Intergenic LTR25-int|LTR|ERV1 -5838 NM_001277092 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 326-57 chr10 20484309 20484589 + 2 NA Intergenic LTR62|LTR|ERVL -67521 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 393-328 chr7 63880836 63881183 + 2 NA Intergenic Intergenic -117797 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 509-4 chr1 63321726 63322171 + 2 NA promoter-TSS (NM_012183) promoter-TSS (NM_012183) 510 NR_121634 100996301 NR_121634 ENSG00000230798 FOXD3-AS1 pasFOXD3 FOXD3 antisense RNA 1 ncRNA 162-87 chr3 109660406 109660543 + 2 NA Intergenic Intergenic 57646 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 193-78 chr17 26836383 26836494 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 252803 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 477-120 chr17 65353410 65353827 + 2 NA Intergenic L1ME3B|LINE|L1 -103923 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 641-101 chr7 86638633 86639067 + 2 NA Intergenic L2a|LINE|L2 -5059 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 790-38 chr4 136408284 136408753 + 2 NA Intergenic Intergenic -494838 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 242-321 chr5 124706936 124707169 + 2 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 38060 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 291-107 chr12 114044422 114044644 + 2 NA Intergenic Intergenic -78208 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 212-276 chr6 36265755 36265938 + 2 NA intron (NM_173676, intron 1 of 7) MLT1F2|LTR|ERVL-MaLR -4614 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 571-155 chr7 52199446 52199931 + 2 NA Intergenic L1MB3|LINE|L1 -806432 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 434-21 chr1 208383251 208383504 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -138993 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 613-42 chr17 51713353 51713844 + 2 NA intron (NM_001082533, intron 5 of 9) MamRep1527|LTR|LTR 278171 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 232-244 chr3 85578193 85578377 + 2 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 73226 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 529-190 chr5 156292205 156292567 + 2 NA Intergenic L1MB3|LINE|L1 -34371 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 543-202 chr5 44100237 44100581 + 2 NA Intergenic L1MEf|LINE|L1 -288323 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 326-66 chr10 55373211 55373404 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -225735 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 185-125 chr22 19673862 19673978 + 2 NA Intergenic Intergenic -40583 NM_002688 5413 Hs.728762 NM_002688 ENSG00000184702 SEPTIN5 CDCREL|CDCREL-1|CDCREL1|H5|HCDCREL-1|PNUTL1|SEPT5 septin 5 protein-coding 292-295 chr3 161878279 161878456 + 2 NA Intergenic L1PA16|LINE|L1 381559 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 322-128 chr12 65284744 65285026 + 2 NA intron (NM_001193461, intron 1 of 6) L2|LINE|L2 5898 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 233-84 chr13 76916103 76916276 + 2 NA Intergenic Intergenic -12262 NR_026983 690 Hs.567241 NR_026983 BTF3P11 BTF3L1|HUMBTFB|OCIF|OPG|TNFRSF11B basic transcription factor 3 pseudogene 11 pseudo 373-364 chr6 104817832 104818041 + 2 NA intron (NM_001350560, intron 4 of 21) HAL1|LINE|L1 41610 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 383-120 chr14 83975423 83975780 + 2 NA Intergenic Intergenic -1296331 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 392-66 chr12 62987964 62988252 + 2 NA Intergenic Intergenic -52958 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 599-130 chr8 36459024 36459566 + 2 NA Intergenic L1MD|LINE|L1 -325079 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 323-33 chr1 209196172 209196408 + 2 NA Intergenic LTR8B|LTR|ERV1 -129166 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 687-43 chr16 48841395 48841974 + 2 NA Intergenic Intergenic -231504 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 267-114 chr14 80375579 80375833 + 2 NA intron (NR_038355, intron 4 of 8) intron (NR_038355, intron 4 of 8) -144649 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 575-66 chr16 66292972 66293427 + 2 NA Intergenic Intergenic -73492 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 615-39 chr14 95015773 95016164 + 2 NA Intergenic MIR3|SINE|MIR 117535 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 200-222 chr5 106960504 106960702 + 2 NA intron (NR_104671, intron 2 of 3) Charlie4a|DNA|hAT-Charlie 50411 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 223-197 chr22 30651760 30651976 + 2 NA TTS (NM_001304795) TTS (NM_001304795) 16007 NM_001304794 150290 Hs.517544 NM_152511 ENSG00000167065 DUSP18 DSP18|DUSP20|LMWDSP20 dual specificity phosphatase 18 protein-coding 357-190 chr2 37713877 37714189 + 2 NA Intergenic L1ME2z|LINE|L1 -41498 NM_001270436 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 323-67 chr10 104897739 104897924 + 2 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -231615 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 297-301 chr3 126006308 126006570 + 2 NA TTS (NM_017836) TTS (NM_017836) 37261 NM_001012337 152015 Hs.663128 NM_001012337 ENSG00000114547 ROPN1B - rhophilin associated tail protein 1B protein-coding 262-409 chr7 113479445 113479659 + 2 NA Intergenic L1MEg|LINE|L1 -360970 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 245-212 chr2 224195372 224195560 + 2 NA Intergenic L2c|LINE|L2 -156147 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 553-210 chr7 35268386 35268734 + 2 NA Intergenic Intergenic -14460 NM_001077653 57057 Hs.404167 NM_020417 ENSG00000164532 TBX20 ASD4 T-box transcription factor 20 protein-coding 313-203 chr17 63257828 63258112 + 2 NA intron (NM_025185, intron 7 of 25) L1MA4A|LINE|L1 182297 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 565-191 chr9 72377062 72377548 + 2 NA Intergenic MIRb|SINE|MIR -12097 NM_001102420 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 276-249 chr2 204313583 204313756 + 2 NA Intergenic Intergenic -231806 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 374-252 chr3 98843394 98843736 + 2 NA intron (NM_080927, intron 3 of 15) intron (NM_080927, intron 3 of 15) 58130 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 389-303 chr5 154956024 154956290 + 2 NA intron (NM_014180, intron 3 of 6) intron (NM_014180, intron 3 of 6) 15084 NM_001014990 29093 Hs.483924 NM_014180 ENSG00000082515 MRPL22 HSPC158|L22mt|MRP-L22|MRP-L25|RPML25 mitochondrial ribosomal protein L22 protein-coding 236-112 chr14 52576747 52576906 + 2 NA intron (NM_001353361, intron 1 of 7) L1P4|LINE|L1 23990 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 271-73 chr11 74809934 74810113 + 2 NA intron (NM_001098638, intron 2 of 5) intron (NM_001098638, intron 2 of 5) 61174 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 421-111 chr17 73004470 73004804 + 2 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 88051 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 218-328 chr8 89418435 89418601 + 2 NA Intergenic Intergenic 339193 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 231-201 chr21 30383047 30383206 + 2 NA Intergenic Intergenic -7748 NR_036221 100422891 NR_036221 ENSG00000265007 MIR4327 - microRNA 4327 ncRNA 438-27 chr10 5151954 5152339 + 2 NA Intergenic HUERS-P1-int|LTR|ERV1 33041 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 393-109 chr15 33850627 33850996 + 2 NA intron (NM_001243996, intron 93 of 102) L1ME3D|LINE|L1 -117686 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 323-153 chr14 83230641 83230919 + 2 NA Intergenic Intergenic 588148 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 393-240 chr4 64965995 64966354 + 2 NA intron (NR_033976, intron 2 of 6) L1M5|LINE|L1 38326 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 161-81 chr5 10172531 10172636 + 2 NA Intergenic Intergenic 77305 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 338-385 chr4 77342940 77343177 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -168695 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 328-216 chr18 1120786 1120965 + 2 NA Intergenic LTR73|LTR|ERV1 -192882 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 362-72 chr10 99026031 99026325 + 2 NA intron (NM_021828, intron 3 of 11) L1MA1|LINE|L1 -101610 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 404-42 chr10 64599747 64600083 + 2 NA Intergenic L1MEf|LINE|L1 -225613 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 317-79 chr11 31323570 31323869 + 2 NA intron (NM_181807, intron 3 of 8) intron (NM_181807, intron 3 of 8) 46020 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 263-162 chr18 2891355 2891535 + 2 NA exon (NM_032048, exon 4 of 8) exon (NM_032048, exon 4 of 8) 44439 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 200-227 chr5 120669118 120669291 + 2 NA intron (NM_001308088, intron 3 of 3) intron (NM_001308088, intron 3 of 3) 137740 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 569-156 chr6 77955004 77955524 + 2 NA Intergenic L1MA2|LINE|L1 302225 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 293-317 chr4 143265194 143265430 + 2 NA Intergenic Intergenic -71564 NM_207123 2549 Hs.80720 NM_002039 ENSG00000109458 GAB1 DFNB26 GRB2 associated binding protein 1 protein-coding 665-46 chr18 78119627 78120120 + 2 NA Intergenic L1MA6|LINE|L1 -126146 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 471-18 chr1 247049993 247050420 + 2 NA intron (NM_033213, intron 1 of 3) L1PBa|LINE|L1 28605 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 336-385 chr3 193856981 193857233 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -13098 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 461-248 chr7 45297566 45297912 + 2 NA Intergenic L1MA9|LINE|L1 139948 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 399-304 chr8 57098937 57099252 + 2 NA Intergenic L1MB4|LINE|L1 -105227 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 486-87 chr14 71974398 71974843 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 41093 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 413-115 chr17 72397602 72397882 + 2 NA Intergenic Intergenic 54931 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 306-314 chr3 81280910 81281115 + 2 NA Intergenic LTR54B|LTR|ERV1 287144 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 318-236 chr19 36952091 36952387 + 2 NA 3' UTR (NM_001204837, exon 5 of 5) 3' UTR (NM_001204837, exon 5 of 5) 35907 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 446-30 chr1 229652934 229653269 + 2 NA intron (NM_014777, intron 8 of 9) intron (NM_014777, intron 8 of 9) 26854 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 362-310 chr4 73809121 73809411 + 2 NA Intergenic L1M3c|LINE|L1 -27412 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 284-283 chr4 53113626 53113776 + 2 NA intron (NM_152540, intron 5 of 8) L2c|LINE|L2 251384 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 297-470 chr8 82917036 82917205 + 2 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 5016 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 546-12 chr1 207323303 207323707 + 2 NA intron (NM_001114752, intron 2 of 10) intron (NM_001114752, intron 2 of 10) 1827 NM_001114752 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 580-134 chr4 37117368 37117754 + 2 NA Intergenic Intergenic 115782 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 227-284 chr5 45989277 45989431 + 2 NA Intergenic ALR/Alpha|Satellite|centr -292974 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 346-150 chr15 26727627 26727939 + 2 NA intron (NM_001278631, intron 3 of 9) L1MC4a|LINE|L1 -11018 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 206-7 chr1 80862718 80862869 + 2 NA Intergenic L1ME2z|LINE|L1 221506 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 129-40 chr2 110841731 110841848 + 2 NA intron (NM_001371254, intron 10 of 18) intron (NM_001371254, intron 10 of 18) 109216 NM_001371254 263-447 chr9 30856677 30856839 + 2 NA Intergenic Intergenic -448304 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 291-480 chr8 139062620 139062909 + 2 NA Intergenic L1MA10|LINE|L1 -148723 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 222-332 chr6 141884803 141884943 + 2 NA Intergenic L1ME1|LINE|L1 203926 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 194-56 chr14 52807577 52807768 + 2 NA Intergenic Intergenic -16065 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 357-286 chr3 142233653 142233892 + 2 NA Intergenic Intergenic -8187 NR_033289 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 266-170 chr2 28633810 28633993 + 2 NA intron (NR_138141, intron 34 of 35) intron (NR_138141, intron 34 of 35) 67544 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 205-220 chr5 51643783 51643943 + 2 NA Intergenic L1M4|LINE|L1 260415 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 510-174 chr21 25021090 25021468 + 2 NA intron (NR_046198, intron 2 of 3) L1M2|LINE|L1 180729 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 250-160 chr17 46922656 46922888 + 2 NA promoter-TSS (NR_148350) promoter-TSS (NR_148350) -345 NM_001321134 9570 Hs.463278 NM_004287 ENSG00000108433 GOSR2 Bos1|EPM6|GS27 golgi SNAP receptor complex member 2 protein-coding 315-11 chr1 81128510 81128817 + 2 NA Intergenic Intergenic -177529 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 413-213 chr4 36539562 36539953 + 2 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 102143 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 354-123 chr13 92812467 92812673 + 2 NA intron (NM_004466, intron 7 of 7) L1MB4|LINE|L1 -90956 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 227-10 chr1 72994959 72995169 + 2 NA Intergenic L1MEg|LINE|L1 -311106 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 675-85 chr7 24854739 24855271 + 2 NA intron (NR_104111, intron 9 of 21) intron (NR_104111, intron 9 of 21) 37616 NM_145321 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 302-122 chr14 42949949 42950198 + 2 NA Intergenic L1PA16|LINE|L1 1343217 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 328-539 chr7 63176970 63177221 + 2 NA Intergenic L1PA17|LINE|L1 126961 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 479-166 chr4 79341218 79341557 + 2 NA Intergenic L1MA4A|LINE|L1 -15326 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 334-324 chr22 30975854 30976030 + 2 NA non-coding (NR_152867, exon 4 of 4) non-coding (NR_152867, exon 4 of 4) 6731 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 537-211 chr6 45940471 45940819 + 2 NA intron (NM_001114086, intron 4 of 5) L2b|LINE|L2 -3048 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 344-109 chr12 41442865 41443168 + 2 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 5277 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 283-226 chr2 49151809 49151986 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 2618 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 217-240 chr3 167355445 167355589 + 2 NA intron (NM_001199202, intron 8 of 20) intron (NM_001199202, intron 8 of 20) 24766 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 404-143 chr18 53610176 53610548 + 2 NA Intergenic L1MC5|LINE|L1 -29303 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 335-35 chr1 224710578 224710777 + 2 NA intron (NR_136287, intron 3 of 4) L2c|LINE|L2 94360 NM_001322305 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 390-414 chr9 35157881 35158171 + 2 NA Intergenic MER4B-int|LTR|ERV1 -3983 NM_001371189 196-234 chr7 25930090 25930198 + 2 NA Intergenic Intergenic 19842 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 215-2 chr1 35182867 35183062 + 2 NA TTS (NM_005066) TTS (NM_005066) 10181 NM_005066 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 603-146 chr6 163213174 163213611 + 2 NA intron (NM_001080379, intron 4 of 4) L1MC4|LINE|L1 -21390 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 292-384 chr6 76145227 76145398 + 2 NA Intergenic Intergenic -72634 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 616-157 chr7 38076617 38077040 + 2 NA Intergenic L1PREC2|LINE|L1 -101417 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 324-295 chr2 211418265 211418443 + 2 NA intron (NM_005235, intron 25 of 27) intron (NM_005235, intron 25 of 27) 800783 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 164-68 chr21 30234955 30235097 + 2 NA Intergenic MIRc|SINE|MIR -18929 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 300-29 chr1 233872622 233872824 + 2 NA Intergenic L2a|LINE|L2 -31953 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 334-2 chr1 12678264 12678570 + 2 NA Intergenic MER70C|LTR|ERVL 33870 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 460-79 chr14 47646285 47646693 + 2 NA intron (NM_001113498, intron 1 of 16) MIR|SINE|MIR 28465 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 474-222 chr4 163906389 163906817 + 2 NA intron (NM_001166373, intron 2 of 7) L1MA10|LINE|L1 291108 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 216-176 chr2 124061458 124061644 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 36264 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 316-509 chr7 32279551 32279760 + 2 NA intron (NM_001322059, intron 1 of 17) L1M6|LINE|L1 19673 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 225-5 chr1 98033608 98033801 + 2 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 11647 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 583-178 chrX 22212875 22213443 + 2 NA intron (NM_001282754, intron 16 of 20) intron (NM_001282754, intron 16 of 20) -40176 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 309-148 chr14 50020642 50020927 + 2 NA intron (NR_131171, intron 6 of 8) MLT1H|LTR|ERVL-MaLR -13264 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 405-229 chr4 70628452 70628802 + 2 NA promoter-TSS (NM_031889) promoter-TSS (NM_031889) -117 NM_031889 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 213-180 chr3 99156257 99156416 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -254641 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 262-311 chr4 63431981 63432205 + 2 NA Intergenic L2a|LINE|L2 977357 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 310-265 chr2 152947927 152948199 + 2 NA Intergenic Intergenic 229426 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 557-64 chr16 62837655 62838078 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -801428 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 273-182 chr18 4500174 4500332 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -44946 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 326-273 chr2 167554124 167554344 + 2 NA Intergenic MIR|SINE|MIR -264438 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 306-117 chr12 129020901 129021124 + 2 NA Intergenic Intergenic -88678 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 358-272 chr21 23924824 23925023 + 2 NA Intergenic Intergenic 396454 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 307-286 chr22 40854059 40854332 + 2 NA intron (NM_003932, intron 1 of 11) intron (NM_003932, intron 1 of 11) 2444 NM_003932 6767 Hs.712713 NM_003932 ENSG00000100380 ST13 AAG2|FAM10A1|FAM10A4|HIP|HOP|HSPABP|HSPABP1|P48|PRO0786|SNC6 ST13 Hsp70 interacting protein protein-coding 272-145 chr16 72599163 72599360 + 2 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 65709 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 136-90 chr8 132399722 132399808 + 2 NA intron (NM_004519, intron 1 of 14) MIR|SINE|MIR 47497 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 294-88 chr12 88253946 88254161 + 2 NA Intergenic Intergenic 111746 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 397-94 chr14 64301041 64301323 + 2 NA intron (NM_001291712, intron 4 of 13) intron (NM_001291712, intron 4 of 13) -6772 NM_001040275 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 537-106 chr2 40947441 40947760 + 2 NA Intergenic L1MEc|LINE|L1 -435165 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 184-32 chr10 120116607 120116756 + 2 NA Intergenic Intergenic 158168 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 305-461 chr6 3662005 3662290 + 2 NA Intergenic MER106A|DNA|hAT-Charlie 89865 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 389-153 chr2 2482353 2482663 + 2 NA Intergenic Intergenic -151233 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 346-68 chr11 35534203 35534452 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -4027 NM_001282675 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 363-363 chr5 84644788 84645125 + 2 NA Intergenic Intergenic -260076 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 528-111 chr18 38891921 38892335 + 2 NA Intergenic Intergenic 730047 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 283-468 chr9 102630172 102630442 + 2 NA intron (NR_103830, intron 3 of 4) L1PA16|LINE|L1 110670 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 194-85 chr19 57442930 57443092 + 2 NA intron (NM_001023561, intron 2 of 2) intron (NM_001023561, intron 2 of 2) 7686 NM_001321954 388567 Hs.467358 NM_001023561 ENSG00000186230 ZNF749 - zinc finger protein 749 protein-coding 322-483 chr7 38516074 38516373 + 2 NA intron (NM_001635, intron 2 of 20) MSTA-int|LTR|ERVL-MaLR 115150 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 347-327 chr3 190751880 190752109 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 110700 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 159-22 chr12 55142609 55142737 + 2 NA Intergenic Intergenic 12904 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 235-342 chr7 106349589 106349780 + 2 NA Intergenic L1MEc|LINE|L1 -64701 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 438-163 chr3 5661310 5661735 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -411267 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 481-325 chrX 143218049 143218388 + 2 NA Intergenic Intergenic 192290 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 212-66 chr11 63376313 63376495 + 2 NA intron (NM_080866, intron 5 of 9) intron (NM_080866, intron 5 of 9) 6619 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 366-319 chr4 95882218 95882577 + 2 NA Intergenic L1MD2|LINE|L1 42304 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 209-321 chr8 87009630 87009831 + 2 NA intron (NM_173538, intron 4 of 10) L1MEg|LINE|L1 143315 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 186-46 chr14 42712723 42712864 + 2 NA Intergenic Intergenic 1105937 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 379-369 chr8 140343990 140344354 + 2 NA intron (NM_001160372, intron 9 of 22) MLT1A0|LTR|ERVL-MaLR 113572 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 236-317 chr7 28845972 28846182 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 112253 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 336-453 chr5 72741381 72741640 + 2 NA Intergenic L1MB3|LINE|L1 -75081 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 366-430 chr8 49446256 49446479 + 2 NA Intergenic Intergenic 65813 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 346-264 chr2 169975980 169976168 + 2 NA intron (NM_172070, intron 24 of 38) L1MA4|LINE|L1 148566 NM_172070 130507 Hs.379548 NM_172070 ENSG00000144357 UBR3 ZNF650 ubiquitin protein ligase E3 component n-recognin 3 protein-coding 352-572 chrX 42626477 42626783 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 151533 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 344-275 chr20 31186609 31186810 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -70955 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 378-280 chr3 47375705 47375991 + 2 NA Intergenic L2a|LINE|L2 -5173 NM_015466 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 504-91 chr16 62659679 62660075 + 2 NA Intergenic L1MDa|LINE|L1 -623439 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 158-82 chr4 56225602 56225706 + 2 NA intron (NM_020722, intron 2 of 10) intron (NM_020722, intron 2 of 10) 55459 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 415-102 chr17 71830340 71830695 + 2 NA Intergenic Intergenic 195462 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 328-388 chr4 30174891 30175195 + 2 NA Intergenic Intergenic -545326 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 466-287 chr8 140253254 140253522 + 2 NA intron (NM_001160372, intron 15 of 22) A-rich|Low_complexity|Low_complexity -152853 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 703-13 chr10 54208321 54208794 + 2 NA intron (NM_001354411, intron 10 of 34) MLT1A0|LTR|ERVL-MaLR -277673 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 474-132 chr2 36808055 36808410 + 2 NA intron (NM_001177969, intron 13 of 14) intron (NM_001177969, intron 13 of 14) 111525 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 616-56 chr16 63057187 63057549 + 2 NA Intergenic Intergenic -1020930 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 409-5 chr1 111046979 111047292 + 2 NA Intergenic L1PA15|LINE|L1 -83191 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 395-320 chr7 125660531 125660866 + 2 NA Intergenic Intergenic -396407 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 369-151 chr16 65684726 65684997 + 2 NA Intergenic Intergenic -108561 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 126-46 chr4 110997513 110997611 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -136915 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 308-264 chr20 15584074 15584261 + 2 NA intron (NM_001351663, intron 8 of 17) MER5A|DNA|hAT-Charlie 339147 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 292-49 chr10 69073070 69073285 + 2 NA Intergenic Intergenic -14426 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 313-67 chr10 120048879 120049102 + 2 NA Intergenic Intergenic 90477 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 546-83 chr16 54183137 54183525 + 2 NA Intergenic Intergenic 87548 NR_126340 100996338 Hs.232014 NR_126340 LINC02169 - long intergenic non-protein coding RNA 2169 ncRNA 228-246 chr4 65753411 65753589 + 2 NA Intergenic Intergenic -83005 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 527-108 chr17 49751545 49751911 + 2 NA intron (NM_030802, intron 1 of 7) AluSx3|SINE|Alu 12403 NM_030802 81558 Hs.514308 NM_030802 ENSG00000121104 FAM117A - family with sequence similarity 117 member A protein-coding 303-163 chr16 65607844 65608108 + 2 NA Intergenic Intergenic -31676 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 259-164 chr17 72017557 72017759 + 2 NA Intergenic Intergenic 8321 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 328-288 chr2 161149570 161149851 + 2 NA intron (NM_004180, intron 1 of 7) L1MB5|LINE|L1 -10718 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 576-159 chr7 52814591 52815099 + 2 NA Intergenic Intergenic -220788 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 283-443 chr8 115176646 115176819 + 2 NA Intergenic Intergenic 491281 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 239-338 chr5 152570502 152570669 + 2 NA Intergenic Intergenic -165306 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 352-218 chr2 16453025 16453293 + 2 NA Intergenic Intergenic 212675 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 239-209 chr20 2581201 2581375 + 2 NA intron (NM_080751, intron 7 of 19) intron (NM_080751, intron 7 of 19) 44681 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 550-46 chr11 55522053 55522431 + 2 NA Intergenic Intergenic -32027 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 206-164 chr3 80901109 80901254 + 2 NA Intergenic Intergenic -92687 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 291-89 chr12 18849661 18849880 + 2 NA Intergenic MIR|SINE|MIR 111651 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 257-405 chr8 48530591 48530774 + 2 NA Intergenic Intergenic -20885 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 392-236 chr4 111586206 111586521 + 2 NA Intergenic Intergenic -559091 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 296-476 chr8 107723396 107723570 + 2 NA Intergenic L1M4|LINE|L1 -225565 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 279-120 chr15 92478611 92478853 + 2 NA intron (NR_161371, intron 2 of 2) intron (NR_161371, intron 2 of 2) 7055 NR_161371 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 323-131 chr14 21572941 21573248 + 2 NA Intergenic L1M3|LINE|L1 -2350 NM_001005465 26533 Hs.554581 NM_001005465 ENSG00000169208 OR10G3 OR14-40 olfactory receptor family 10 subfamily G member 3 protein-coding 795-16 chr11 13217553 13218221 + 2 NA Intergenic Intergenic -58765 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 213-277 chr8 86537748 86537863 + 2 NA intron (NM_003909, intron 7 of 16) intron (NM_003909, intron 7 of 16) 23370 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 192-166 chr5 83942896 83943053 + 2 NA 3' UTR (NM_005711, exon 11 of 11) 3' UTR (NM_005711, exon 11 of 11) -222119 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 324-237 chr19 24365926 24366208 + 2 NA Intergenic ALR/Alpha|Satellite|centr -202620 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 558-169 chr5 26413371 26413752 + 2 NA Intergenic L1ME1|LINE|L1 625025 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 343-90 chr12 1855625 1855853 + 2 NA intron (NM_172364, intron 22 of 37).2 intron (NM_172364, intron 22 of 37).2 35174 NM_001163926 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 587-164 chr8 79031053 79031526 + 2 NA Intergenic Intergenic 193760 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 391-4 chr1 38387991 38388312 + 2 NA Intergenic L1ME1|LINE|L1 -87045 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 215-252 chr5 39965714 39965852 + 2 NA Intergenic Intergenic -86508 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 509-115 chr2 120832327 120832648 + 2 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 40206 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 344-262 chr2 218054011 218054189 + 2 NA intron (NR_034176, intron 2 of 13) MER31-int|LTR|ERV1 7190 NR_002712 3580 Hs.647858 NR_002712 CXCR2P1 CXCR2P|IL8RBP C-X-C motif chemokine receptor 2 pseudogene 1 pseudo 394-245 chr4 94946210 94946451 + 2 NA intron (NM_001203, intron 2 of 12) intron (NM_001203, intron 2 of 12) -49902 NM_001256792 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 472-42 chr10 119093873 119094307 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -10023 NR_130122 404636 Hs.434241 NM_207009 ENSG00000119979 DENND10 FAM45A DENN domain containing 10 protein-coding 527-150 chr2 221728763 221729130 + 2 NA Intergenic L1PB3|LINE|L1 -154744 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 214-122 chr17 29894015 29894169 + 2 NA intron (NM_001282129, intron 1 of 15) intron (NM_001282129, intron 1 of 15) -35811 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 177-96 chr21 14893265 14893426 + 2 NA intron (NR_146322, intron 1 of 3) intron (NR_146322, intron 1 of 3) 25323 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 366-134 chr14_GL000225v1_random 53773 54137 + 2 NA NA Intergenic NA NA 276-349 chr4 98119032 98119245 + 2 NA intron (NM_174952, intron 3 of 10) L1MC4|LINE|L1 24338 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 318-184 chr15 80916368 80916565 + 2 NA intron (NM_001293304, intron 14 of 29) intron (NM_001293304, intron 14 of 29) 73353 NR_126327 23184 Hs.578450 NM_015154 ENSG00000117899 MESD BOCA|MESDC2 mesoderm development LRP chaperone protein-coding 309-218 chr18 64846291 64846587 + 2 NA Intergenic L1MC1|LINE|L1 -586384 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 376-212 chr20 21883720 21883972 + 2 NA Intergenic L1PA15|LINE|L1 -170244 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 518-35 chr10 85473072 85473557 + 2 NA intron (NR_120671, intron 4 of 5) L1MB5|LINE|L1 23722 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 270-20 chr1 206120341 206120530 + 2 NA Intergenic L1ME3Cz|LINE|L1 -3047 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 315-74 chr10 129213141 129213312 + 2 NA Intergenic HAL1b|LINE|L1 -254015 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 232-50 chr10 132434707 132434907 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -10382 NR_149317 170393 Hs.375059 NR_149317 C10orf91 - chromosome 10 open reading frame 91 (putative) ncRNA 356-491 chr8 132258307 132258578 + 2 NA intron (NM_004519, intron 1 of 14) L1M4|LINE|L1 -153177 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 684-97 chr5 79763360 79763938 + 2 NA intron (NM_153610, intron 9 of 12) intron (NM_153610, intron 9 of 12) 73813 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 276-187 chr17 29385743 29385943 + 2 NA Intergenic Intergenic -4819 NR_039749 100616122 NR_039749 ENSG00000284162 MIR4523 - microRNA 4523 ncRNA 168-43 chr18 38412043 38412175 + 2 NA Intergenic Intergenic 754974 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 267-270 chr3 163210638 163210792 + 2 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 92586 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 221-237 chr5 33118170 33118356 + 2 NA Intergenic Intergenic -111472 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 403-255 chr5 105266540 105266937 + 2 NA Intergenic Intergenic 167264 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 345-324 chr21 28555316 28555498 + 2 NA Intergenic L1PA10|LINE|L1 16089 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 207-285 chr8 62377257 62377398 + 2 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 128473 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 566-210 chr9 88762834 88763237 + 2 NA Intergenic L1ME1|LINE|L1 -17130 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 251-135 chr18 7090469 7090664 + 2 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 27231 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 314-518 chr7 7507484 7507792 + 2 NA intron (NM_001037763, intron 9 of 34) intron (NM_001037763, intron 9 of 34) 28235 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 535-127 chr2 81310835 81311214 + 2 NA Intergenic L1PA14|LINE|L1 155922 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 236-64 chr11 20795450 20795650 + 2 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 125964 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 376-49 chr10 57977908 57978196 + 2 NA Intergenic L1PA10|LINE|L1 289842 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 278-212 chr2 65679968 65680120 + 2 NA Intergenic Intergenic -247445 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 140-9 chr10 93544009 93544135 + 2 NA Intergenic Intergenic -22593 NM_181745 338557 Hs.661022 NM_181745 ENSG00000186188 FFAR4 BMIQ10|GPR120|GPR129|GT01|O3FAR1|PGR4 free fatty acid receptor 4 protein-coding 272-115 chr14 52823792 52824004 + 2 NA Intergenic MIR3|SINE|MIR -32291 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 381-149 chr18 12829717 12830006 + 2 NA intron (NM_080423, intron 4 of 8) HAL1M8|LINE|L1 11101 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 252-244 chr22 47982755 47982916 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -291529 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 396-285 chr5 88347225 88347567 + 2 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) -44799 NR_105020 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 394-120 chr16 13783651 13783932 + 2 NA Intergenic Intergenic -136366 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 315-462 chr8 26148010 26148313 + 2 NA Intergenic Intergenic -102748 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 258-388 chr8 83401888 83402092 + 2 NA Intergenic Intergenic -1768 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 188-159 chr4 159922938 159923059 + 2 NA Intergenic Intergenic -145214 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 201-180 chr4 85786863 85787036 + 2 NA intron (NM_001346093, intron 1 of 6) intron (NM_001346093, intron 1 of 6) 8151 NM_001346093 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 374-296 chr5 10494574 10494905 + 2 NA intron (NR_104606, intron 2 of 2) LTR22C0|LTR|ERVK 7989 NR_104606 101929412 Hs.508287 NR_104606 ENSG00000249396 LINC02212 - long intergenic non-protein coding RNA 2212 ncRNA 161-94 chr6 16399330 16399469 + 2 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 160812 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 763-50 chr5 7239208 7239938 + 2 NA Intergenic Intergenic 29781 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 222-170 chr2 45152006 45152183 + 2 NA Intergenic Intergenic 102847 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 359-133 chr13 89569173 89569355 + 2 NA Intergenic Intergenic -4851 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 516-278 chrX 58293492 58293864 + 2 NA Intergenic ALR/Alpha|Satellite|centr -383045 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 387-214 chr22 24910224 24910503 + 2 NA intron (NM_001098498, intron 20 of 23) intron (NM_001098498, intron 20 of 23) 36332 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 233-172 chr2 88549403 88549591 + 2 NA intron (NR_110236, intron 2 of 2) MIRb|SINE|MIR 10777 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 517-34 chr10 100252516 100252833 + 2 NA intron (NM_001303404, intron 6 of 12) AluSx3|SINE|Alu 14964 NM_001303406 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19 like cell cycle control factor 1 protein-coding 536-193 chr6 54551726 54552107 + 2 NA Intergenic L1PREC2|LINE|L1 243475 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 301-372 chr5 125464996 125465186 + 2 NA Intergenic L1ME3A|LINE|L1 -28170 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 346-391 chr5 83918461 83918663 + 2 NA Intergenic Intergenic -197707 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 354-485 chr8 137042554 137042808 + 2 NA Intergenic Intergenic 370907 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 518-121 chr2 13241594 13241876 + 2 NA Intergenic Intergenic -234722 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 300-281 chr3 97044890 97045098 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 230400 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 220-286 chr5 59321885 59322042 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 35007 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 212-101 chr14 67350353 67350499 + 2 NA intron (NM_015994, intron 3 of 8) L1ME4c|LINE|L1 9378 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 287-282 chr4 52863777 52863985 + 2 NA intron (NM_023940, intron 2 of 3) intron (NM_023940, intron 2 of 3) 1564 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 387-52 chr11 19212925 19213240 + 2 NA Intergenic Intergenic -11099 NM_001369404 8048 Hs.83577 NM_003476 ENSG00000129170 CSRP3 CLP|CMD1M|CMH12|CRP3|LMO4|MLP cysteine and glycine rich protein 3 protein-coding 789-11 chr12 14428802 14429573 + 2 NA intron (NM_001286515, intron 2 of 12) intron (NM_001286515, intron 2 of 12) 43906 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 361-371 chr5 125790535 125790841 + 2 NA Intergenic LTR47A2|LTR|ERVL 297427 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 243-252 chr20 24139526 24139717 + 2 NA Intergenic Intergenic -60146 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 345-281 chr2 125888055 125888246 + 2 NA Intergenic HERVL-int|LTR|ERVL 229835 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 307-132 chr14 43726281 43726577 + 2 NA Intergenic Intergenic 780854 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 530-258 chr8 122483327 122483763 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 85099 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 255-25 chr10 34076713 34076920 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -304136 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 201-34 chr10 107112590 107112724 + 2 NA intron (NM_001206569, intron 1 of 25) L1MA6|LINE|L1 52049 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 267-309 chr5 8182164 8182334 + 2 NA Intergenic L1MEc|LINE|L1 275315 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 613-72 chr20 42055243 42055734 + 2 NA Intergenic Intergenic -437111 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 290-254 chr21 20201947 20202210 + 2 NA Intergenic Intergenic 56607 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 389-360 chr8 72666870 72667217 + 2 NA intron (NM_004770, intron 2 of 2) (GA)n|Simple_repeat|Simple_repeat -65002 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 204-31 chr10 115555237 115555381 + 2 NA intron (NM_207303, intron 26 of 28) L1MC4a|LINE|L1 461944 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 240-16 chr1 109194525 109194719 + 2 NA intron (NM_001284352, intron 14 of 20) intron (NM_001284352, intron 14 of 20) 8073 NM_001284353 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 271-58 chr10 105525686 105525937 + 2 NA Intergenic L1M4|LINE|L1 294522 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 309-467 chr6 2335930 2336124 + 2 NA intron (NR_046229, intron 4 of 6) L1PB1|LINE|L1 90274 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 218-346 chr9 29586562 29586757 + 2 NA Intergenic L1PB4|LINE|L1 -373058 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 411-301 chr8 139560305 139560616 + 2 NA Intergenic L1MA9|LINE|L1 142663 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 314-237 chr18 11385164 11385471 + 2 NA Intergenic L1MEc|LINE|L1 -69161 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 249-133 chr15 94290424 94290648 + 2 NA Intergenic L1MEf|LINE|L1 -7665 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 340-57 chr10 88175568 88175776 + 2 NA Intergenic L1MA5|LINE|L1 312047 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 461-237 chr6 113699593 113699958 + 2 NA Intergenic Intergenic -49700 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 347-87 chr12 9001315 9001539 + 2 NA intron (NM_005810, intron 3 of 4) LTR42|LTR|ERVL 11802 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 371-389 chr8 107657544 107657805 + 2 NA Intergenic MER50B|LTR|ERV1 -159756 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 211-41 chr10 105678871 105679014 + 2 NA intron (NR_120625, intron 3 of 3) L1PA15|LINE|L1 141391 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 440-245 chr8 75565077 75565381 + 2 NA 3' UTR (NM_004133, exon 10 of 10) 3' UTR (NM_004133, exon 10 of 10) 25261 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 553-247 chr9 79942401 79942814 + 2 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) -32416 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 342-12 chr1 68758025 68758329 + 2 NA Intergenic L1PB1|LINE|L1 -261095 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 527-39 chr10 111594463 111594909 + 2 NA Intergenic Intergenic 480395 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 212-235 chr4 73722026 73722222 + 2 NA Intergenic Intergenic -18445 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 295-26 chr1 188380877 188381147 + 2 NA Intergenic Intergenic 937384 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 534-98 chr18 55935962 55936278 + 2 NA Intergenic Intergenic -15921 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 317-134 chr13 108898534 108898730 + 2 NA intron (NM_015011, intron 15 of 34) intron (NM_015011, intron 15 of 34) 268671 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 250-249 chr21 21148707 21148876 + 2 NA intron (NM_001352597, intron 1 of 10) intron (NM_001352597, intron 1 of 10) 1629 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 224-163 chr2 187735799 187735951 + 2 NA Intergenic L1MDa|LINE|L1 -181370 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 598-105 chr5 41166466 41167012 + 2 NA intron (NM_000065, intron 9 of 17) L2c|LINE|L2 46793 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 347-296 chr3 13281546 13281816 + 2 NA Intergenic Intergenic 138641 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 283-64 chr10 93124193 93124448 + 2 NA Intergenic L1ME4c|LINE|L1 50427 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 369-154 chr17 11912436 11912788 + 2 NA intron (NM_001372, intron 61 of 68) L1MB8|LINE|L1 29710 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 592-83 chr2 82990008 82990442 + 2 NA Intergenic Intergenic 133422 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 315-296 chr21 42401889 42402094 + 2 NA Intergenic L1ME3|LINE|L1 -1911 NM_001001895 53347 Hs.473912 NM_018961 ENSG00000160185 UBASH3A CLIP4|STS-2|TULA|TULA-1 ubiquitin associated and SH3 domain containing A protein-coding 596-166 chr8 107149268 107149718 + 2 NA Intergenic Intergenic 187022 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 272-286 chr3 186171437 186171700 + 2 NA intron (NM_001346, intron 22 of 24) MER2|DNA|TcMar-Tigger -62479 NM_004454 2119 Hs.43697 NM_004454 ENSG00000244405 ETV5 ERM ETS variant 5 protein-coding 213-105 chr16 22660484 22660645 + 2 NA Intergenic Intergenic 114866 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 474-115 chr18 5833453 5833691 + 2 NA Intergenic Intergenic -7123 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 219-105 chr14 78588500 78588670 + 2 NA intron (NM_004796, intron 1 of 16) MIRc|SINE|MIR 184866 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 673-122 chr8 125254258 125254638 + 2 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 162588 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 306-557 chrX 57667551 57667770 + 2 NA Intergenic MER51-int|LTR|ERV1 12600 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 582-130 chr5 153079374 153079801 + 2 NA Intergenic MER41B|LTR|ERV1 -107238 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 628-116 chr7 20431863 20432394 + 2 NA Intergenic LTR102_Mam|LTR|ERVL -100366 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 304-301 chr20 47110299 47110554 + 2 NA intron (NM_172110, intron 9 of 13) AluJb|SINE|Alu -56541 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 305-416 chr5 2513549 2513847 + 2 NA Intergenic Intergenic -198893 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 262-217 chr2 117533524 117533723 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -281068 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 499-237 chr7 9277094 9277448 + 2 NA Intergenic Intergenic -356999 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 311-205 chr18 1699429 1699626 + 2 NA Intergenic L1MC3|LINE|L1 -339898 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 276-242 chr2 155496793 155496993 + 2 NA Intergenic Intergenic 758038 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 346-250 chr2 102915570 102915819 + 2 NA Intergenic Intergenic -19972 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 319-137 chr14 45783407 45783712 + 2 NA Intergenic L1MA7|LINE|L1 -67957 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 587-75 chr2 106721510 106721833 + 2 NA Intergenic Intergenic 164357 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 192-226 chrX 53073769 53073904 + 2 NA intron (NM_018969, intron 1 of 1) (TA)n|Simple_repeat|Simple_repeat -8531 NM_022117 64061 Hs.136164 NM_022117 ENSG00000184205 TSPYL2 CDA1|CINAP|CTCL|DENTT|HRIHFB2216|NP79|SE204|TSPX TSPY like 2 protein-coding 124-67 chr6 48820351 48820432 + 2 NA Intergenic Intergenic 642862 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 145-54 chr3 106912693 106912782 + 2 NA Intergenic Intergenic 327901 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 297-491 chr8 127508566 127508771 + 2 NA Intergenic Intergenic -26529 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 308-68 chr10 95157536 95157717 + 2 NA Intergenic L1PA6|LINE|L1 -36574 NM_207321 142827 Hs.134229 NM_207321 ENSG00000173124 ACSM6 C10orf129|bA310E22.3 acyl-CoA synthetase medium chain family member 6 protein-coding 397-167 chr2 117590557 117590826 + 2 NA Intergenic L1PB1|LINE|L1 -224000 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 197-140 chr3 119367389 119367515 + 2 NA intron (NM_020754, intron 2 of 11) intron (NM_020754, intron 2 of 11) -44692 NR_046748 100874246 Hs.607097 NR_046748 ENSG00000241155 ARHGAP31-AS1 - ARHGAP31 antisense RNA 1 ncRNA 330 chr1 2954281 2954568 + 2 NA Intergenic L1MEg|LINE|L1 -67043 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 372-306 chr22 44834889 44835159 + 2 NA intron (NM_181335, intron 7 of 11) L1M4|LINE|L1 82466 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 555-156 chr5 16351314 16351696 + 2 NA Intergenic Intergenic 89597 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 397-14 chr1 177615997 177616357 + 2 NA Intergenic Intergenic -84347 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 363-239 chr2 194901283 194901485 + 2 NA Intergenic Intergenic 170789 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 353-466 chr6 142347333 142347655 + 2 NA intron (NM_198569, intron 2 of 24) MamRep605|LTR?|LTR? 45487 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 294-356 chr5 3250758 3250930 + 2 NA Intergenic MER4CL34|LTR|ERV1 73009 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 399-318 chr8 136755232 136755534 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 224585 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 289-344 chr4 87477350 87477597 + 2 NA intron (NM_004684, intron 10 of 10) MLT1F|LTR|ERVL-MaLR 52030 NM_004684 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 226-246 chr4 29532638 29532785 + 2 NA Intergenic Intergenic 318419 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 526-107 chr19 29311654 29311987 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -98669 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 220-61 chr10 116712809 116712979 + 2 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) 29672 NM_025015 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 212-285 chr6 119017517 119017685 + 2 NA intron (NM_024581, intron 4 of 17) intron (NM_024581, intron 4 of 17) 51542 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 307-108 chr12 82980370 82980670 + 2 NA intron (NM_152588, intron 7 of 11) intron (NM_152588, intron 7 of 11) 293365 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 346-237 chr2 52495114 52495430 + 2 NA Intergenic AluSc5|SINE|Alu 124624 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 310-419 chr5 105680409 105680664 + 2 NA Intergenic Intergenic 581062 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 282-16 chr1 164940506 164940677 + 2 NA Intergenic L1PA5|LINE|L1 -165950 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 292-428 chr8 75166083 75166315 + 2 NA Intergenic L1ME3Cz|LINE|L1 112282 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 354-303 chr3 96407704 96407940 + 2 NA Intergenic Intergenic 47858 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 341-223 chr19 56516437 56516730 + 2 NA intron (NM_020813, intron 3 of 4) intron (NM_020813, intron 3 of 4) 8728 NM_001321768 57573 Hs.230188 NM_020813 ENSG00000196263 ZNF471 ERP1|Z1971 zinc finger protein 471 protein-coding 290-417 chr7 45557041 45557278 + 2 NA Intergenic L1MEd|LINE|L1 -16981 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 419-16 chr1 108813523 108813870 + 2 NA Intergenic Intergenic 43398 NM_152763 254268 Hs.729441 NM_152763 ENSG00000162641 AKNAD1 C1orf62 AKNA domain containing 1 protein-coding 476-244 chr6 135369517 135369922 + 2 NA intron (NM_017651, intron 22 of 27) L1MEc|LINE|L1 128021 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 203-181 chr5 74851801 74851954 + 2 NA intron (NM_015566, intron 1 of 12) intron (NM_015566, intron 1 of 12) -14016 NR_134288 441086 Hs.653007 NR_134288 LOC441086 - uncharacterized LOC441086 ncRNA 295-236 chr2 180434983 180435193 + 2 NA Intergenic L1M5|LINE|L1 -257016 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 480-141 chr2 50110551 50110936 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -136540 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 253-400 chr8 29302288 29302478 + 2 NA Intergenic SATR1|Satellite|Satellite -39313 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 443-117 chr16 83593618 83593983 + 2 NA intron (NM_001220489, intron 6 of 12) L2a|LINE|L2 85454 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 180-166 chr8 68342800 68342918 + 2 NA intron (NR_146187, intron 1 of 13) Tigger7|DNA|TcMar-Tigger -11368 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 574-81 chr2 120576069 120576515 + 2 NA Intergenic Intergenic -109943 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 272-372 chr6 18378096 18378306 + 2 NA Intergenic L1M5|LINE|L1 -9149 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 182-104 chr21 15063675 15063811 + 2 NA intron (NM_003489, intron 1 of 3) intron (NM_003489, intron 1 of 3) 1257 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 267-449 chr9 37684638 37684827 + 2 NA intron (NM_001371223, intron 1 of 15) L2c|LINE|L2 16723 NM_001371223 380-235 chr22 34699675 34699991 + 2 NA Intergenic MIRb|SINE|MIR 298083 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 492-219 chr5 123998429 123998762 + 2 NA Intergenic MIRb|SINE|MIR 439925 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 322-393 chr4 133063391 133063655 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 85593 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 451-169 chr4 179184976 179185366 + 2 NA Intergenic Intergenic -1277235 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 317-452 chr7 46872955 46873243 + 2 NA Intergenic L1ME3A|LINE|L1 -175977 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 308-352 chr4 106941877 106942154 + 2 NA intron (NM_014421, intron 1 of 3) intron (NM_014421, intron 1 of 3) 94298 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 156-111 chr9 9927045 9927135 + 2 NA intron (NM_002839, intron 5 of 45) LTR106_Mam|LTR|LTR 127698 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 456-95 chr14 66854333 66854649 + 2 NA intron (NM_001024218, intron 4 of 21) Kanga2_a|DNA|TcMar-Tc2 -334949 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 290-372 chr5 160861725 160861999 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -9651 NM_001366652 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 196-30 chr10 64632252 64632443 + 2 NA Intergenic Intergenic -193181 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 324-501 chr7 86325341 86325592 + 2 NA Intergenic L1MEg|LINE|L1 -318443 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 645-29 chr14 56565296 56565693 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy -14304 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 394-139 chr17 82731550 82731888 + 2 NA Intergenic Intergenic -3896 NM_022158 64122 Hs.151135 NM_022158 ENSG00000167363 FN3K - fructosamine 3 kinase protein-coding 868-45 chr8 108627346 108627915 + 2 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 159964 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 376-81 chr12 29424543 29424777 + 2 NA intron (NR_073172, intron 1 of 1) MIR|SINE|MIR 35366 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 273-278 chr22 29017943 29018111 + 2 NA intron (NM_001206998, intron 2 of 8) intron (NM_001206998, intron 2 of 8) 13449 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 401-307 chr7 153094421 153094800 + 2 NA Intergenic Intergenic 317624 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 217-245 chr3 188004100 188004283 + 2 NA Intergenic Intergenic -27784 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 467-148 chr20 12822838 12823283 + 2 NA Intergenic L2a|LINE|L2 113903 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 637-32 chr12 94010868 94011402 + 2 NA Intergenic Intergenic -67529 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 266-285 chr4 60288555 60288763 + 2 NA Intergenic L1ME4c|LINE|L1 -633960 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 344-372 chr5 8290547 8290822 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 166880 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 200-290 chr9 79625901 79626015 + 2 NA intron (NM_001351563, intron 5 of 17) intron (NM_001351563, intron 5 of 17) 52781 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 548-209 chr7 29795051 29795524 + 2 NA Intergenic Intergenic -11267 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 287-409 chr8 99130885 99131108 + 2 NA intron (NM_017890, intron 8 of 61) intron (NM_017890, intron 8 of 61) 117730 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 304-298 chr20 32877687 32877900 + 2 NA intron (NM_001143967, intron 4 of 26) MIRb|SINE|MIR 18870 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 260-335 chr5 10029182 10029353 + 2 NA Intergenic L1MA1|LINE|L1 -125443 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 208-270 chr8 122709054 122709165 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -15003 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 450-49 chr11 76569039 76569411 + 2 NA Intergenic L1MC3|LINE|L1 100713 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 272-471 chr9 26843277 26843440 + 2 NA intron (NM_001167575, intron 5 of 5) intron (NM_001167575, intron 5 of 5) 49444 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 316-243 chr2 6959972 6960225 + 2 NA intron (NM_001349186, intron 2 of 7) intron (NM_001349186, intron 2 of 7) 27014 NR_146069 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4|hUIP4 ring finger protein 144A protein-coding 306-361 chr4 79413628 79413885 + 2 NA Intergenic Intergenic -5528 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 329-278 chr2 83760571 83760835 + 2 NA Intergenic L1MA5|LINE|L1 237889 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 191-183 chr6 8167073 8167231 + 2 NA Intergenic Intergenic -64557 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 344-527 chrUn_KI270519v1 62900 63096 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 397-35 chr10 71805164 71805466 + 2 NA intron (NM_001171934, intron 8 of 21) MIR3|SINE|MIR -6568 NM_001171936 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 505-36 chr10 104556817 104557153 + 2 NA Intergenic Intergenic -76710 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 238-433 chrX 95621718 95621898 + 2 NA Intergenic LTR56|LTR|ERV1 -558582 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 500-123 chr2 14302228 14302582 + 2 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 98553 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 396-83 chr12 17594995 17595326 + 2 NA Intergenic Intergenic -6082 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 363-114 chr12 129952230 129952505 + 2 NA Intergenic Intergenic -48342 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 337-363 chr3 112222823 112223094 + 2 NA intron (NM_001320531, intron 12 of 27).2 intron (NM_001320531, intron 12 of 27).2 71258 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 372-408 chr5 90367216 90367576 + 2 NA Intergenic Intergenic 42390 NM_004365 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 252-378 chr6 118418596 118418809 + 2 NA Intergenic Intergenic -82671 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 485-147 chr2 153960534 153960859 + 2 NA intron (NM_052917, intron 3 of 12) MER66B|LTR|ERV1 16302 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 326-101 chr11 69145710 69145948 + 2 NA Intergenic Intergenic -10106 NM_001369201 107984345 NM_001369201 SMIM38 - small integral membrane protein 38 protein-coding 237-229 chr3 8458997 8459155 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 42582 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 1011-5 chr10 39316330 39317302 + 2 NA Intergenic ALR/Alpha|Satellite|centr 620220 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 617-11 chr10 17225022 17225425 + 2 NA intron (NR_108060, intron 1 of 3) intron (NR_108060, intron 1 of 3) 1675 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 206-149 chr22 19550299 19550470 + 2 NA Intergenic AluSx|SINE|Alu 16455 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 551-3 chr1 55519767 55520221 + 2 NA Intergenic Intergenic 294353 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 303-350 chr5 30698610 30698881 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -494941 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 713-19 chr12 110769340 110769873 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -26715 NM_002710 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 334-151 chr14 68156147 68156342 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 332652 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 450-111 chr17 27696316 27696640 + 2 NA Intergenic HERVK9-int|LTR|ERVK 65290 NM_009587 3965 Hs.81337 NM_002308 ENSG00000168961 LGALS9 HUAT|LGALS9A galectin 9 protein-coding 276-482 chr9 105458244 105458514 + 2 NA intron (NM_001287191, intron 1 of 13) LTR2752|LTR|ERV1 10345 NM_001330739 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 336-9 chr1 35153234 35153506 + 2 NA Intergenic MER34D|LTR|ERV1 39775 NM_005066 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 480-300 chr8 122761671 122762021 + 2 NA Intergenic L1MD2|LINE|L1 -19809 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 345-87 chr11 35896691 35896975 + 2 NA Intergenic L2a|LINE|L2 -47148 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 421-235 chr5 45004974 45005332 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 196206 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 341-420 chr5 13864098 13864409 + 2 NA intron (NM_001369, intron 28 of 78) intron (NM_001369, intron 28 of 78) 80227 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 360-243 chr2 158334860 158335097 + 2 NA intron (NM_138803, intron 7 of 13) intron (NM_138803, intron 7 of 13) 121775 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 327-432 chr6 40318701 40319022 + 2 NA Intergenic Intergenic 37145 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 268-382 chr7 101670387 101670646 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -41220 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 465-180 chr3 118652646 118653019 + 2 NA intron (NR_135547, intron 2 of 3) intron (NR_135547, intron 2 of 3) 11064 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 252-48 chr10 76668369 76668528 + 2 NA Intergenic Intergenic -219596 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 339-609 chr9 79696622 79696864 + 2 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) 123566 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 286-110 chr14 35486278 35486512 + 2 NA Intergenic Intergenic -47769 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 281-448 chr8 130488554 130488760 + 2 NA Intergenic MIR|SINE|MIR -44983 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 617-17 chr11 26893510 26894078 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -100318 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 321-194 chr15 61815086 61815302 + 2 NA Intergenic L2a|LINE|L2 85276 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 284-139 chr15 79561720 79561938 + 2 NA Intergenic Intergenic 129313 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 246-322 chr5 41212530 41212746 + 2 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 894 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 400-352 chr8 126614653 126614922 + 2 NA Intergenic Intergenic -56309 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 263-277 chr4 28839688 28839937 + 2 NA Intergenic Intergenic 20230 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 410-224 chr4 108755386 108755740 + 2 NA intron (NM_031279, intron 4 of 12) AluSx1|SINE|Alu 7490 NM_031279 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 519-3 chr1 48859817 48860197 + 2 NA intron (NR_136623, intron 5 of 12) intron (NR_136623, intron 5 of 12) -83038 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 173-12 chr10 68414874 68415037 + 2 NA non-coding (NR_102264, exon 22 of 22) non-coding (NR_102264, exon 22 of 22) -7661 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 335-413 chr5 15839391 15839642 + 2 NA intron (NM_001278317, intron 2 of 3) L1ME4b|LINE|L1 -95666 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 282-410 chr6 124483398 124483655 + 2 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 200521 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 267-20 chr1 113627451 113627587 + 2 NA intron (NM_001142782, intron 9 of 20) L1MA3|LINE|L1 131636 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 246-238 chr21 16439105 16439289 + 2 NA intron (NR_136550, intron 1 of 3) intron (NR_136550, intron 1 of 3) 18902 NR_136550 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 488-220 chr5 106947464 106947801 + 2 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 63382 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 395-177 chr2 129853991 129854349 + 2 NA Intergenic L1M4|LINE|L1 23321 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 239-123 chr15 95518242 95518474 + 2 NA Intergenic Intergenic 85265 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 487-10 chr1 70760773 70761201 + 2 NA intron (NR_125938, intron 5 of 6) L1MEf|LINE|L1 54534 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 384-14 chr1 95140827 95141158 + 2 NA intron (NM_001199691, intron 1 of 7) intron (NM_001199691, intron 1 of 7) 23069 NM_001199691 100527978 Hs.483512 NM_001199691 ENSG00000271092 TLCD4-RWDD3 TMEM56-RWDD3 TLCD4-RWDD3 readthrough protein-coding 340-442 chr5 50707200 50707390 + 2 NA intron (NM_024615, intron 2 of 25) intron (NM_024615, intron 2 of 25) 39881 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 294-518 chrX 117603913 117604148 + 2 NA Intergenic L1PREC2|LINE|L1 369708 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 409-152 chr2 147050558 147050874 + 2 NA Intergenic Intergenic 463659 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 363-298 chr3 128194458 128194774 + 2 NA intron (NM_021937, intron 1 of 6) L1ME4a|LINE|L1 -40702 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 485-180 chr3 35882112 35882407 + 2 NA Intergenic Intergenic 137783 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 429-83 chr13 88186118 88186527 + 2 NA intron (NR_131919, intron 1 of 4) intron (NR_131919, intron 1 of 4) 43455 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 220-163 chr2 63825275 63825441 + 2 NA Intergenic Intergenic -15606 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 430-311 chr8 97966646 97966878 + 2 NA intron (NM_002380, intron 5 of 18) intron (NM_002380, intron 5 of 18) 75455 NR_002581 26775 Hs.684855 NR_002581 ENSG00000207067 SNORA72 RNU72|U72 small nucleolar RNA, H/ACA box 72 snoRNA 438-233 chr6 4421599 4421909 + 2 NA Intergenic L1MCa|LINE|L1 -67044 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 220-212 chr22 45623257 45623416 + 2 NA Intergenic L1PA6|LINE|L1 -17689 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 129-85 chrX 82307484 82307610 + 2 NA Intergenic L1MB8|LINE|L1 1105445 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 240-112 chr12 90290238 90290412 + 2 NA Intergenic MIRc|SINE|MIR -2993 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 253-146 chr16 14224529 14224726 + 2 NA intron (NM_001308142, intron 8 of 16) L1MB3|LINE|L1 37941 NM_001365411 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 331-514 chr8 13585400 13585633 + 2 NA intron (NM_001348082, intron 1 of 16) MLT1C|LTR|ERVL-MaLR 18647 NM_001007090 157773 Hs.104941 NM_001007090 ENSG00000164743 C8orf48 - chromosome 8 open reading frame 48 protein-coding 262-111 chr13 92839982 92840197 + 2 NA intron (NM_004466, intron 7 of 7) (AT)n|Simple_repeat|Simple_repeat -118475 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 241-114 chr14 67085001 67085174 + 2 NA intron (NM_001024218, intron 10 of 21) intron (NM_001024218, intron 10 of 21) -104353 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 432-83 chr14 75614548 75614894 + 2 NA intron (NM_001195283, intron 1 of 9) THE1D|LTR|ERVL-MaLR 9181 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 317-440 chr7 14810286 14810457 + 2 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 31079 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 328-292 chr2 187904316 187904508 + 2 NA Intergenic Intergenic -349907 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 349-389 chr4 153772656 153772847 + 2 NA Intergenic L1MB7|LINE|L1 -12727 NM_173662 285533 Hs.388364 NM_173662 ENSG00000145428 RNF175 - ring finger protein 175 protein-coding 485-21 chr1 230494356 230494612 + 2 NA Intergenic L1ME2z|LINE|L1 -68152 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 287-338 chr5 170447716 170447996 + 2 NA intron (NM_001034838, intron 1 of 7) intron (NM_001034838, intron 1 of 7) -56164 NM_001034837 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 350-51 chr10 70788090 70788265 + 2 NA Intergenic L1MDa|LINE|L1 -2758 NM_001318241 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 174-127 chr6 73102556 73102700 + 2 NA intron (NM_001160132, intron 5 of 13) L1MA3|LINE|L1 40886 NR_046621 100873997 Hs.741819 NR_046621 ENSG00000229154 KCNQ5-AS1 - KCNQ5 antisense RNA 1 ncRNA 196-250 chr8 76985007 76985120 + 2 NA intron (NM_001172087, intron 2 of 2) intron (NM_001172087, intron 2 of 2) 15015 NM_000318 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 224-160 chr2 163303729 163303865 + 2 NA Intergenic LTR78|LTR|ERV1 432211 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 547-27 chr10 118574712 118575134 + 2 NA Intergenic L1MDa|LINE|L1 20725 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 310-473 chr7 25942716 25942917 + 2 NA Intergenic Intergenic 7170 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 612-156 chrX 64576629 64577026 + 2 NA Intergenic Intergenic -181375 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 189-229 chr9 101992911 101993034 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -254392 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 570-41 chr11 72911043 72911515 + 2 NA intron (NM_014824, intron 9 of 19) L1MA3|LINE|L1 96868 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 203-39 chr11 97650630 97650816 + 2 NA Intergenic L1PA12|LINE|L1 1142298 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 567-114 chr3 53557128 53557630 + 2 NA intron (NM_001128840, intron 3 of 47) AluSp|SINE|Alu 62768 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 323-118 chr12 89914538 89914717 + 2 NA Intergenic Intergenic -33066 NR_135019 105369891 Hs.148998 NR_135019 ENSG00000257725 LINC02399 - long intergenic non-protein coding RNA 2399 ncRNA 445-233 chr6 53211058 53211351 + 2 NA Intergenic MER57E1|LTR|ERV1 -62363 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 275-76 chr12 6260304 6260452 + 2 NA Intergenic L2a|LINE|L2 -50058 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 265-211 chr20 7525433 7525660 + 2 NA Intergenic L1MDa|LINE|L1 153938 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 265-231 chr22_KI270736v1_random 117543 117739 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 290-68 chr11 10926627 10926818 + 2 NA Intergenic Intergenic 68505 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 494-279 chr7 154543128 154543444 + 2 NA intron (NR_157196, intron 4 of 25) intron (NR_157196, intron 4 of 25) 238127 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 624-99 chr5 45807286 45807829 + 2 NA Intergenic AluJr4|SINE|Alu -111177 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 212-321 chr8 56322108 56322278 + 2 NA Intergenic L1ME4a|LINE|L1 -1417 NM_001318050 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 278-103 chr14 45574539 45574735 + 2 NA Intergenic LTR33|LTR|ERVL 140965 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 428-242 chr5 129300224 129300607 + 2 NA Intergenic L1PA8A|LINE|L1 96732 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 479-196 chr5 58517613 58517953 + 2 NA Intergenic L1PA11|LINE|L1 12326 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 512-239 chr6 88029882 88030240 + 2 NA Intergenic L1MC2|LINE|L1 -17780 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 458-278 chrX 74872430 74872788 + 2 NA intron (NM_001008537, intron 1 of 3) intron (NM_001008537, intron 1 of 3) 52843 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 231-301 chr5 173558642 173558850 + 2 NA Intergenic HAL1|LINE|L1 -20888 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 742-74 chr7 22035534 22035987 + 2 NA Intergenic Intergenic -89861 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 574-29 chr12 47549705 47550217 + 2 NA Intergenic AluJr|SINE|Alu 134953 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 427-111 chr2 44153148 44153539 + 2 NA Intergenic Intergenic -15460 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 426-47 chr11 60089271 60089643 + 2 NA intron (NM_000139, intron 1 of 6) MIRc|SINE|MIR 793 NM_001256916 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 236-203 chr21 27107732 27107919 + 2 NA Intergenic Intergenic -140737 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 238-172 chr2 62231192 62231399 + 2 NA Intergenic Intergenic 15774 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 385-42 chr10 121353534 121353781 + 2 NA Intergenic Intergenic 177657 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 329-31 chr1 198796985 198797262 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 61859 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 499-7 chr1 83751086 83751529 + 2 NA intron (NR_119375, intron 1 of 2) intron (NR_119375, intron 1 of 2) 109239 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 243-228 chr2 122993961 122994151 + 2 NA Intergenic L1M4b|LINE|L1 79425 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 285-92 chr12 64575629 64575798 + 2 NA Intergenic Intergenic -34782 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 248-230 chr21 22440713 22440940 + 2 NA Intergenic LTR33B|LTR|ERVL 342209 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 282-230 chr2 148238843 148239087 + 2 NA intron (NM_018328, intron 4 of 14) MLT1C|LTR|ERVL-MaLR -217361 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 242-10 chr1 91657878 91658077 + 2 NA Intergenic L2a|LINE|L2 156869 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 490-227 chr5 119167477 119167866 + 2 NA exon (NM_001290322, exon 23 of 43) exon (NM_001290322, exon 23 of 43) 13034 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 378-178 chr17 71370324 71370615 + 2 NA Intergenic MIRc|SINE|MIR -168290 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 534-235 chr7 52513501 52513924 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -521921 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 260-187 chr18 71754587 71754731 + 2 NA intron (NR_126324, intron 1 of 4) L1MA1|LINE|L1 27567 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 335-167 chr14 90238277 90238469 + 2 NA Intergenic Intergenic -18180 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 331-99 chr11 95540583 95540892 + 2 NA Intergenic L1PA16|LINE|L1 249045 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 420-280 chr8 46056718 46057016 + 2 NA Intergenic ALR/Alpha|Satellite|centr 560776 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 314-514 chr6 153660144 153660434 + 2 NA Intergenic Intergenic -350207 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 349-378 chr4 92960712 92960922 + 2 NA intron (NM_001286838, intron 2 of 14) L1MC1|LINE|L1 656418 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 350-312 chr3 68135096 68135352 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 130977 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 449-72 chr14 27438759 27439009 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -173704 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 269-85 chr12 26429554 26429727 + 2 NA intron (NM_002223, intron 48 of 56) intron (NM_002223, intron 48 of 56) 234067 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 332-434 chr5 152823428 152823695 + 2 NA intron (NR_109877, intron 2 of 4) L1MD1|LINE|L1 148788 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 332-430 chr5 126253847 126254173 + 2 NA Intergenic MIR|SINE|MIR 31165 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 670-7 chr1 191393354 191393985 + 2 NA Intergenic L1MA10|LINE|L1 -165171 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 354-360 chr5 11874402 11874637 + 2 NA intron (NM_001288717, intron 1 of 20) MER44B|DNA|TcMar-Tigger 29927 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 315-295 chr21 36187525 36187783 + 2 NA intron (NM_005128, intron 2 of 36) AluJo|SINE|Alu 23113 NM_005128 9980 Hs.204575 NM_005128 ENSG00000142197 DOP1B 21orf5|C21orf5|DOPEY2 DOP1 leucine zipper like protein B protein-coding 281-264 chr20 59980800 59981012 + 2 NA intron (NM_177980, intron 4 of 17) L1ME1|LINE|L1 -15468 NM_021810 60437 Hs.729046 NM_021810 ENSG00000124215 CDH26 VR20 cadherin 26 protein-coding 246-6 chr1 74150503 74150672 + 2 NA intron (NM_001105659, intron 4 of 7) intron (NM_001105659, intron 4 of 7) 47589 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 381-235 chr22 33664741 33664965 + 2 NA intron (NM_133642, intron 2 of 14) AluSc|SINE|Alu 40067 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 266-131 chr15 76685765 76685999 + 2 NA intron (NR_148227, intron 20 of 32) intron (NR_148227, intron 20 of 32) 99235 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 404-65 chr11 81771569 81771806 + 2 NA Intergenic Intergenic 119149 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 332-254 chr2 86413523 86413720 + 2 NA Intergenic Intergenic -27750 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 305-227 chr19 30660133 30660334 + 2 NA intron (NM_001352260, intron 5 of 5) intron (NM_001352260, intron 5 of 5) 287849 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 314-232 chr18 574489 574743 + 2 NA Intergenic Intergenic -5764 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 195-76 chr16 50558109 50558300 + 2 NA intron (NM_033119, intron 3 of 9) intron (NM_033119, intron 3 of 9) 9808 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 138-54 chr4 44494252 44494348 + 2 NA Intergenic L1M4|LINE|L1 -45491 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 332-129 chr12 96738385 96738600 + 2 NA intron (NM_001306084, intron 50 of 67) MLT1C|LTR|ERVL-MaLR -168765 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 587-22 chr11 10961960 10962385 + 2 NA Intergenic L1M3c|LINE|L1 103955 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 480-189 chr3 104784684 104785063 + 2 NA Intergenic Intergenic -581840 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 498-248 chr7 54070808 54071149 + 2 NA Intergenic LTR41B|LTR|ERVL -259047 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 568-139 chr3 160117447 160117817 + 2 NA intron (NR_108088, intron 3 of 9) L1PA8|LINE|L1 89460 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 352-219 chr2 20546339 20546646 + 2 NA Intergenic Intergenic -44968 NR_157978 107985856 NR_157978 LOC107985856 - uncharacterized LOC107985856 ncRNA 383-18 chr1 165054521 165054854 + 2 NA Intergenic Intergenic -280046 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 236-298 chr6 20644713 20644931 + 2 NA intron (NM_017774, intron 4 of 15) intron (NM_017774, intron 4 of 15) 110365 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 366-326 chr4 117774464 117774722 + 2 NA Intergenic L1MA3|LINE|L1 -59808 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 695-6 chr1 189787182 189787678 + 2 NA Intergenic Intergenic 688580 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 300-56 chr10 109561939 109562137 + 2 NA Intergenic Intergenic 361208 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 335-19 chr1 112054255 112054557 + 2 NA Intergenic L1MC4|LINE|L1 63870 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 553-55 chr13 96596021 96596378 + 2 NA intron (NM_153456, intron 1 of 1) L1PB3|LINE|L1 168970 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 165-25 chr12 119302640 119302753 + 2 NA intron (NR_024246, intron 1 of 3) intron (NR_024246, intron 1 of 3) 684 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 362-397 chr7 8595679 8596013 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 162237 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 280-383 chr7 53927980 53928211 + 2 NA Intergenic Intergenic -116164 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 699-93 chr6 85807698 85808182 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -129207 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 401-46 chr10 115067753 115068071 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -25453 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 246-210 chr2 161483837 161484007 + 2 NA Intergenic L1MA5A|LINE|L1 23980 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 416-260 chr4 183029861 183030255 + 2 NA Intergenic HERV16-int|LTR|ERVL -7607 NR_003612 403315 Hs.652187 NR_003612 ENSG00000230219 FAM92A1P2 FAM92A3 family with sequence similarity 92, member A3 pseudo 318-72 chr10 76103196 76103414 + 2 NA intron (NM_001305581, intron 5 of 6) L3|LINE|CR1 320544 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 213-41 chr10 65629294 65629437 + 2 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 57940 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 190-163 chr7 48171936 48172093 + 2 NA intron (NM_152701, intron 1 of 61) intron (NM_152701, intron 1 of 61) 556 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 673-88 chr4 93660146 93660632 + 2 NA intron (NM_001286838, intron 13 of 14) intron (NM_001286838, intron 13 of 14) -168364 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 332-305 chr21 31820953 31821182 + 2 NA Intergenic L1MC3|LINE|L1 -51953 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 368-281 chr3 17153537 17153871 + 2 NA Intergenic Intergenic 220508 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 428-320 chr9 96836293 96836585 + 2 NA intron (NM_001346995, intron 2 of 3) AluSx|SINE|Alu 18075 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 230-90 chr12 94061560 94061744 + 2 NA Intergenic Intergenic -86925 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 297-226 chr2 133520337 133520619 + 2 NA intron (NM_207481, intron 2 of 17) MIR|SINE|MIR 47985 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 379-38 chr10 42308599 42308835 + 2 NA Intergenic Intergenic 59328 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 255-13 chr1 172646717 172646932 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -12184 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 500-264 chr7 28159391 28159757 + 2 NA intron (NM_175061, intron 1 of 4) L2a|LINE|L2 -20883 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 288-238 chr21 23846008 23846266 + 2 NA Intergenic AluSc|SINE|Alu -461302 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 182-180 chr9 85501893 85502022 + 2 NA Intergenic Intergenic 240072 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 255-106 chr14 47224522 47224751 + 2 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 118610 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 326-34 chr1 176014581 176014770 + 2 NA intron (NM_022457, intron 15 of 19) intron (NM_022457, intron 15 of 19) -46135 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 311-440 chr6 115117986 115118175 + 2 NA Intergenic Intergenic 525755 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 466-198 chr5 26682734 26683033 + 2 NA Intergenic Intergenic 355703 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 184-142 chr6 76470361 76470540 + 2 NA Intergenic Intergenic 123173 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 160-113 chr7 136781693 136781818 + 2 NA Intergenic MIR|SINE|MIR -86897 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 510-235 chr5 156872257 156872576 + 2 NA Intergenic L1MC4|LINE|L1 22121 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 363-117 chr13 33621172 33621433 + 2 NA intron (NM_001243476, intron 3 of 17) L1ME2|LINE|L1 55492 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 629-117 chr7 38115522 38115874 + 2 NA Intergenic AluJr|SINE|Alu -62547 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 389-122 chr16 69594373 69594724 + 2 NA intron (NM_138714, intron 2 of 15) Tigger3d|DNA|TcMar-Tigger 28582 NM_173215 10725 Hs.371987 NM_006599 ENSG00000102908 NFAT5 NF-AT5|NFATL1|NFATZ|OREBP|TONEBP nuclear factor of activated T cells 5 protein-coding 243-22 chr1 189128019 189128183 + 2 NA Intergenic L1MA4A|LINE|L1 1347909 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 275-264 chr4 57464789 57465032 + 2 NA intron (NR_125907, intron 5 of 5) intron (NR_125907, intron 5 of 5) 39038 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 312-280 chr20 5332589 5332776 + 2 NA Intergenic MER101-int|LTR|ERV1 -15950 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 202-62 chr14 23518355 23518511 + 2 NA intron (NR_046052, intron 2 of 2) intron (NR_046052, intron 2 of 2) 5623 NR_046052 79178 Hs.655179 NM_024328 ENSG00000259431 THTPA THTP|THTPASE thiamine triphosphatase protein-coding 445-214 chr5 18515307 18515694 + 2 NA Intergenic Intergenic 708226 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 288-473 chr9 103445132 103445343 + 2 NA Intergenic Intergenic -120204 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 392-42 chr11 78989022 78989332 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 412932 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 486-15 chr1 195730486 195730839 + 2 NA Intergenic Intergenic 358053 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 226-283 chr5 65194537 65194708 + 2 NA intron (NR_135689, intron 22 of 25) intron (NR_135689, intron 22 of 25) 287298 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 440-279 chrX 98709510 98709807 + 2 NA Intergenic L1PREC2|LINE|L1 -1145123 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 333-312 chr20 54517959 54518132 + 2 NA intron (NM_018431, intron 1 of 7) MIR|SINE|MIR 42452 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 638-3 chr1 62029932 62030504 + 2 NA intron (NM_001350145, intron 29 of 43) intron (NM_001350145, intron 29 of 43) -48568 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 167-59 chr2 118512029 118512191 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 90856 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 364 chr1 5600140 5600434 + 2 NA Intergenic Intergenic 262454 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 228-40 chr10 82443325 82443517 + 2 NA intron (NR_163253, intron 3 of 10) L2c|LINE|L2 -210501 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 327-189 chr16 66175205 66175390 + 2 NA Intergenic Intergenic -191394 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 406-206 chr4 52008909 52009211 + 2 NA intron (NM_001024611, intron 2 of 4) L1ME1|LINE|L1 11303 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 219-52 chr11 79527181 79527328 + 2 NA Intergenic L1MB5|LINE|L1 -86224 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 216-288 chr5 119555932 119556099 + 2 NA Intergenic L1ME3Cz|LINE|L1 -73543 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 254-2 chr1 17756076 17756266 + 2 NA intron (NM_030812, intron 1 of 2) intron (NM_030812, intron 1 of 2) 838 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 276-193 chr17 72733430 72733683 + 2 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -93084 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 222-328 chr6 96312357 96312522 + 2 NA Intergenic Intergenic -209367 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 279-355 chr6 38823783 38823966 + 2 NA intron (NM_001371, intron 27 of 91) MADE1|DNA|TcMar-Mariner 108563 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 228-156 chr2 38152476 38152650 + 2 NA intron (NR_027252, intron 2 of 2) intron (NR_027252, intron 2 of 2) 21458 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 268-239 chr3 26414164 26414336 + 2 NA Intergenic Intergenic -208556 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 387-295 chr5 133348493 133348794 + 2 NA intron (NM_015082, intron 4 of 15) intron (NM_015082, intron 4 of 15) 79063 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 857-38 chr3 87628078 87628776 + 2 NA Intergenic Intergenic -164279 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 537-143 chr20 52229693 52230154 + 2 NA Intergenic Intergenic -37938 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 246-48 chr10 59496213 59496345 + 2 NA Intergenic LTR19C|LTR|ERV1 -133098 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 382-215 chr2 120888877 120889209 + 2 NA intron (NM_005270, intron 2 of 13) intron (NM_005270, intron 2 of 13) 96762 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 343-285 chr2 194845873 194846116 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 115399 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 360-115 chr14 41804247 41804466 + 2 NA intron (NM_001330106, intron 2 of 4) LTR8A|LTR|ERV1 197500 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 475-17 chr1 231688914 231689253 + 2 NA intron (NM_001164556, intron 1 of 4) intron (NM_001164556, intron 1 of 4) 62268 NM_001164556 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 474-103 chr16 63335357 63335596 + 2 NA Intergenic MIR|SINE|MIR -1299038 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 462-277 chr8 50158810 50159175 + 2 NA intron (NR_135798, intron 1 of 15) L1ME3E|LINE|L1 -5139 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 360-100 chr12 118865157 118865486 + 2 NA Intergenic Intergenic -31785 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 189-226 chr9 79564132 79564273 + 2 NA Intergenic Intergenic -7571 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 290-493 chrX 78858861 78859084 + 2 NA Intergenic Intergenic 42277 NR_036258 100422932 NR_036258 ENSG00000283622 MIR4328 - microRNA 4328 ncRNA 403-295 chr8 21278054 21278364 + 2 NA Intergenic L1M4a2|LINE|L1 -20030 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 251-289 chr5 26241941 26242176 + 2 NA Intergenic Intergenic 796528 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 241-218 chr20 42433912 42434126 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -251464 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 231-69 chr12 47088839 47089059 + 2 NA intron (NM_138371, intron 1 of 3) intron (NM_138371, intron 1 of 3) -8990 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 212-219 chr3 104473035 104473201 + 2 NA Intergenic L1M4|LINE|L1 -893595 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 231-293 chr5 102154365 102154520 + 2 NA Intergenic Intergenic 141842 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 262-451 chr9 69237402 69237577 + 2 NA intron (NM_001369870, intron 15 of 23) AluJo|SINE|Alu 32334 NM_001369875 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 500-55 chr11 90942440 90942731 + 2 NA Intergenic L2a|LINE|L2 -73383 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 377-428 chr9 79849540 79849890 + 2 NA intron (NR_121213, intron 1 of 2) MIR3|SINE|MIR 25185 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 289-174 chr17 33562088 33562336 + 2 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 -28452 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 579-73 chr2 126438339 126438783 + 2 NA Intergenic L2c|LINE|L2 -217374 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 691-23 chr14 43275849 43276381 + 2 NA Intergenic Intergenic 1231168 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 399-230 chr4 96099226 96099568 + 2 NA Intergenic Intergenic -211306 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 295-147 chr15 42805041 42805188 + 2 NA intron (NM_173500, intron 9 of 14) L2c|LINE|L2 -67986 NM_138477 146059 Hs.599232 NM_138477 ENSG00000140326 CDAN1 CDA1|CDAI|CDAN1A|DLT|PRO1295 codanin 1 protein-coding 359-28 chr1 170477551 170477831 + 2 NA intron (NR_125958, intron 1 of 2) L1ME1|LINE|L1 -54431 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 236-331 chr7 68343712 68343936 + 2 NA Intergenic AluY|SINE|Alu 323571 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 299-85 chr11 105673702 105673896 + 2 NA intron (NR_046356, intron 2 of 16) A-rich|Low_complexity|Low_complexity 63093 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 266-335 chr5 76061975 76062179 + 2 NA Intergenic Intergenic -21306 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 604-167 chr8 126210456 126210948 + 2 NA Intergenic L1PA15|LINE|L1 -114793 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 299-20 chr1 111248519 111248761 + 2 NA Intergenic L2c|LINE|L2 18904 NM_001025199 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 437-10 chr1 119681818 119682188 + 2 NA Intergenic FRAM|SINE|Alu -29931 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 327-280 chr2 171430652 171430869 + 2 NA intron (NM_001321157, intron 1 of 10) LTR28C|LTR|ERV1 3230 NM_001321154 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 495-53 chr12 118548465 118548854 + 2 NA Intergenic MLT1G-int|LTR|ERVL-MaLR 172104 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 289-365 chr5 31259870 31260036 + 2 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 66267 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 373-164 chr18 22262299 22262505 + 2 NA Intergenic L1MC4|LINE|L1 92965 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 203-107 chr2 43015218 43015381 + 2 NA Intergenic AluSz6|SINE|Alu 24244 NR_110585 102723854 Hs.570165 NR_110585 ENSG00000231826 LINC01819 - long intergenic non-protein coding RNA 1819 ncRNA 178-128 chr7 11654897 11655032 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 177234 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 136-44 chr2 113912781 113912892 + 2 NA intron (NM_001277140, intron 1 of 11) L1ME4b|LINE|L1 -21844 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 564-130 chr3 115362273 115362692 + 2 NA Intergenic Intergenic -215194 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 341-557 chr9 12440637 12440903 + 2 NA Intergenic L1ME3B|LINE|L1 -252615 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 494-55 chr12 113186520 113186843 + 2 NA intron (NM_032848, intron 2 of 3) intron (NM_032848, intron 2 of 3) 960 NM_032848 84934 Hs.524762 NM_032848 ENSG00000139405 RITA1 C12orf52|RITA RBPJ interacting and tubulin associated 1 protein-coding 347-505 chr8 68688227 68688406 + 2 NA intron (NR_146187, intron 8 of 13) L1PB2|LINE|L1 -356825 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 352-192 chr18 12567831 12568163 + 2 NA intron (NM_020148, intron 2 of 15) ERVL-B4-int|LTR|ERVL 88735 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 233-3 chr1 74434606 74434799 + 2 NA intron (NM_015978, intron 17 of 24) intron (NM_015978, intron 17 of 24) 48738 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 614-34 chr14 101060478 101060991 + 2 NA TTS (NR_030176) TTS (NR_030176) 161 NR_030176 574454 NR_030176 ENSG00000207961 MIR496 MIRN496|hsa-mir-496|mir-496 microRNA 496 ncRNA 336-561 chr8 133922813 133923043 + 2 NA Intergenic Intergenic 36432 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 328-307 chr2 239158812 239159025 + 2 NA intron (NM_006037, intron 6 of 26) intron (NM_006037, intron 6 of 26) 36539 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 638-106 chr4 79409124 79409616 + 2 NA Intergenic L1ME1|LINE|L1 -1142 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 284-191 chr2 29669778 29669941 + 2 NA intron (NM_004304, intron 3 of 28) L1MA4|LINE|L1 -194482 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 350-114 chr13 22857951 22858130 + 2 NA Intergenic L1ME3A|LINE|L1 40141 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 199-58 chr14 52018573 52018693 + 2 NA intron (NM_007361, intron 14 of 21) intron (NM_007361, intron 14 of 21) 29087 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 251-212 chr21 29524849 29525020 + 2 NA Intergenic Intergenic 28887 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 503-127 chr18 4787070 4787386 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -293954 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 355-499 chr8 80154362 80154636 + 2 NA intron (NR_105035, intron 1 of 6) intron (NR_105035, intron 1 of 6) 16622 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 462-175 chr3 46345902 46346165 + 2 NA Intergenic L1MB5|LINE|L1 -7711 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 323-89 chr11 82757703 82757984 + 2 NA Intergenic Intergenic -23979 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 210-273 chr7 97516740 97516887 + 2 NA Intergenic Intergenic -215273 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 313-134 chr14 19891822 19892065 + 2 NA Intergenic L1PB4|LINE|L1 15675 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 363-102 chr12 55558186 55558515 + 2 NA Intergenic L1PA15-16|LINE|L1 7123 NM_001005494 341418 Hs.495021 NM_001005494 ENSG00000179626 OR6C4 OR12-10 olfactory receptor family 6 subfamily C member 4 protein-coding 205-53 chr11 50598232 50598421 + 2 NA Intergenic ALR/Alpha|Satellite|centr 189179 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 445-210 chr4 143720602 143720979 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -20115 NM_001168235 166752 Hs.252714 NM_001168235 ENSG00000183090 FREM3 - FRAS1 related extracellular matrix 3 protein-coding 512-220 chr5 80242504 80242836 + 2 NA intron (NR_126061, intron 1 of 13) AluSx3|SINE|Alu 13378 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 308-183 chr17 54133451 54133643 + 2 NA Intergenic Intergenic 310620 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 561-154 chr5 6078486 6078873 + 2 NA Intergenic MER49|LTR|ERV1 258613 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 281-82 chr12 22892115 22892360 + 2 NA Intergenic L1PA16|LINE|L1 267066 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 353-462 chr6 133696334 133696579 + 2 NA intron (NR_109982, intron 4 of 8) L1MC4a|LINE|L1 -124691 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 296-240 chr2 129315951 129316181 + 2 NA Intergenic L1MDa|LINE|L1 -42175 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 363-125 chr13 99805375 99805712 + 2 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) -76542 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 369-95 chr13 78352290 78352545 + 2 NA intron (NR_047001, intron 3 of 5) L2|LINE|L2 -243705 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 289-232 chr2 88103602 88103802 + 2 NA intron (NM_001330364, intron 6 of 8) MER5B|DNA|hAT-Charlie -21103 NR_039940 100616447 NR_039940 ENSG00000265003 MIR4780 - microRNA 4780 ncRNA 384-302 chr5 130630814 130631048 + 2 NA Intergenic L1MA2|LINE|L1 534325 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 220-241 chr3 135485116 135485299 + 2 NA Intergenic L2c|LINE|L2 -480521 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 346-119 chr13 64112981 64113214 + 2 NA Intergenic Intergenic -37086 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 204-202 chr3 102291976 102292117 + 2 NA Intergenic Intergenic 128341 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 346-399 chr5 107218515 107218710 + 2 NA Intergenic Intergenic -207598 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 341-504 chr7 121394675 121394935 + 2 NA intron (NM_001040020, intron 1 of 9) MIRb|SINE|MIR 1503 NM_014888 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 396-197 chr20 57482293 57482664 + 2 NA Intergenic Intergenic 42389 NR_072975 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 225-195 chr3 10715328 10715524 + 2 NA Intergenic L1MB7|LINE|L1 48783 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 355-101 chr11 93078941 93079236 + 2 NA Intergenic L2c|LINE|L2 109465 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 564-163 chr5 150869860 150870374 + 2 NA intron (NM_001346557, intron 2 of 3) intron (NM_001346557, intron 2 of 3) 23594 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 170-115 chr5 58989499 58989605 + 2 NA intron (NM_006203, intron 10 of 14) intron (NM_006203, intron 10 of 14) 10346 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 391-279 chr5 13384076 13384380 + 2 NA Intergenic L1PA16|LINE|L1 -351342 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 306-33 chr1 175401431 175401648 + 2 NA intron (NM_003285, intron 4 of 22) intron (NM_003285, intron 4 of 22) -208552 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 373-270 chr3 187200136 187200382 + 2 NA 3' UTR (NM_153708, exon 2 of 2) 3' UTR (NM_153708, exon 2 of 2) 2773 NM_153708 132112 Hs.518480 NM_153708 ENSG00000175077 RTP1 Z3CXXC1 receptor transporter protein 1 protein-coding 441-92 chr16 9966517 9966862 + 2 NA intron (NM_001134408, intron 2 of 13) L1PA13|LINE|L1 215378 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 440-239 chr8 21456954 21457347 + 2 NA Intergenic L1ME3G|LINE|L1 158911 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 263-246 chr22 34254006 34254177 + 2 NA Intergenic L1ME3|LINE|L1 -331203 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 343-494 chr7 7013918 7014153 + 2 NA Intergenic MER21C|LTR|ERVL 53010 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 176-96 chr4 39147046 39147214 + 2 NA Intergenic Intergenic -35399 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 281-249 chr2 238675693 238675922 + 2 NA Intergenic L1MC5|LINE|L1 -120308 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 568-121 chr20 52633099 52633654 + 2 NA intron (NR_110038, intron 2 of 2) intron (NR_110038, intron 2 of 2) 12538 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 838-4 chr1 219292434 219293102 + 2 NA Intergenic Intergenic 117799 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 342-172 chr16 3288240 3288472 + 2 NA intron (NM_005741, intron 4 of 5) intron (NM_005741, intron 4 of 5) 4865 NM_005741 10127 Hs.611475 NM_005741 ENSG00000006194 ZNF263 FPM315|ZKSCAN12|ZSCAN44 zinc finger protein 263 protein-coding 120-11 chr12 13670422 13670526 + 2 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -293729 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 525-115 chr2 40023055 40023487 + 2 NA intron (NR_038441, intron 2 of 4) MER54B|LTR|ERVL 105637 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 223-224 chr3 122038621 122038837 + 2 NA Intergenic L1MCa|LINE|L1 -16482 NM_175924 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 246-124 chr14 81747849 81748041 + 2 NA Intergenic L2c|LINE|L2 -4807 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 286-96 chr12 95760018 95760198 + 2 NA intron (NM_001329701, intron 2 of 9) L1MEc|LINE|L1 30087 NM_001329702 59277 Hs.201034 NM_021229 ENSG00000074527 NTN4 PRO3091 netrin 4 protein-coding 267-6 chr1 55724350 55724487 + 2 NA Intergenic L2|LINE|L2 220545 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 338-293 chr20 15879407 15879606 + 2 NA intron (NM_001351663, intron 9 of 17) intron (NM_001351663, intron 9 of 17) 43808 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 316-540 chr8 49426351 49426624 + 2 NA Intergenic Intergenic 85693 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 548-145 chr3 54651858 54652263 + 2 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -12203 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 298-114 chr14 37568145 37568403 + 2 NA Intergenic Intergenic 26975 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 308-538 chr9 81450086 81450318 + 2 NA Intergenic Intergenic 239333 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 413-318 chr8 142028081 142028364 + 2 NA Intergenic L1MEc|LINE|L1 -148117 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 387-274 chr5 32808658 32808883 + 2 NA Intergenic Intergenic 97449 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 693-73 chr4 60811008 60811554 + 2 NA Intergenic LTR85c|LTR|Gypsy? -111338 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 360-218 chr2 66835815 66836059 + 2 NA Intergenic Intergenic -68499 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 528-6 chr1 49903389 49903850 + 2 NA intron (NM_001323575, intron 1 of 12) MIR|SINE|MIR 120335 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 508-9 chr1 107360909 107361364 + 2 NA intron (NM_001113226, intron 2 of 6) (AT)n|Simple_repeat|Simple_repeat 213067 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 467-259 chr7 21707387 21707694 + 2 NA intron (NM_001277115, intron 39 of 81) intron (NM_001277115, intron 39 of 81) 164501 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 588-61 chr19 36803006 36803432 + 2 NA intron (NR_040028, intron 2 of 3) intron (NR_040028, intron 2 of 3) 5656 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 443-266 chr6 102079512 102079930 + 2 NA Intergenic AluJr|SINE|Alu 680736 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 378-151 chr15 86591272 86591592 + 2 NA intron (NM_152336, intron 22 of 24) MER21B|LTR|ERVL -274464 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 312-417 chr5 68791378 68791596 + 2 NA Intergenic MER4B|LTR|ERV1 238440 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 430-8 chr1 108993805 108994097 + 2 NA intron (NM_014969, intron 8 of 14) HAL1|LINE|L1 -30452 NM_001048210 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 406-16 chr1 157922821 157923140 + 2 NA Intergenic Intergenic -2987 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 386-352 chr8 88724089 88724414 + 2 NA Intergenic L1MA9|LINE|L1 -396768 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 172-137 chr8 115406442 115406551 + 2 NA Intergenic Intergenic 261517 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 398-86 chr13 55904380 55904606 + 2 NA Intergenic LTR77|LTR|ERV1 730039 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 264-310 chr5 18998599 18998811 + 2 NA Intergenic Intergenic 887567 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 232-109 chr15 23713476 23713669 + 2 NA Intergenic L1MEf|LINE|L1 -26267 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 327-347 chr3 168631497 168631671 + 2 NA intron (NR_021485, intron 4 of 15) intron (NR_021485, intron 4 of 15) 79730 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 179-45 chr2 24347217 24347323 + 2 NA intron (NM_001348182, intron 1 of 38) L1ME4a|LINE|L1 13266 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 466-218 chr5 150899782 150900127 + 2 NA intron (NM_001172832, intron 2 of 4) intron (NM_001172832, intron 2 of 4) 5029 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 219-268 chr4 181915151 181915317 + 2 NA Intergenic Intergenic -85261 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 462-12 chr1 113420673 113420997 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 30320 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 218-38 chr10 123305708 123305895 + 2 NA Intergenic Intergenic 151399 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 273-126 chr14 40815168 40815342 + 2 NA Intergenic Intergenic -139456 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 253-217 chr20 11772034 11772205 + 2 NA Intergenic L2|LINE|L2 98596 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 325-114 chr11 130595542 130595789 + 2 NA Intergenic Intergenic -71070 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 474-167 chr20 37606880 37607212 + 2 NA Intergenic AluSz6|SINE|Alu 16073 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 262-367 chr6 50912373 50912597 + 2 NA Intergenic L1ME1|LINE|L1 93614 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 283-288 chr3 35188464 35188661 + 2 NA intron (NR_110817, intron 2 of 3) MER89|LTR|ERV1 205461 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 268-181 chr2 19738970 19739176 + 2 NA Intergenic Intergenic -129781 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 477-150 chr2 56395500 56395864 + 2 NA Intergenic L1MC1|LINE|L1 -209912 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 393-382 chr9 11566056 11566433 + 2 NA Intergenic L1MA3|LINE|L1 953038 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 239-89 chr13 73086567 73086765 + 2 NA Intergenic Intergenic 27661 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 313-44 chr10 51986182 51986364 + 2 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -286678 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 611-26 chr11 83922151 83922536 + 2 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -239918 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 607-108 chr4 113232158 113232664 + 2 NA intron (NM_001354275, intron 6 of 43) intron (NM_001354275, intron 6 of 43) -60428 NM_001354280 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 264-119 chr14 21674960 21675136 + 2 NA Intergenic Intergenic -4031 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 411-303 chr9 18091927 18092182 + 2 NA Intergenic Intergenic -382099 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 279-311 chr5 12308420 12308666 + 2 NA Intergenic Intergenic -266314 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 264-42 chr10 43947626 43947821 + 2 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 35321 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 471-68 chr12 91431835 91432174 + 2 NA Intergenic Intergenic -249187 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 407-346 chr9 104637816 104638069 + 2 NA Intergenic L1MA4|LINE|L1 -19738 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 136-68 chr4 167947347 167947454 + 2 NA Intergenic Intergenic -145137 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 326-43 chr1 209235766 209235973 + 2 NA Intergenic Intergenic -89587 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 441-229 chr6 94360173 94360531 + 2 NA Intergenic MER52D|LTR|ERV1 642049 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 360-272 chr20 63020351 63020591 + 2 NA intron (NR_033370, intron 1 of 4) L1MEg|LINE|L1 11088 NR_033370 63930 Hs.640084 NR_033370 ENSG00000272259 LINC01749 - long intergenic non-protein coding RNA 1749 ncRNA 367-412 chr7 30822512 30822830 + 2 NA intron (NR_037598, intron 7 of 19) AluJb|SINE|Alu 51254 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 357-40 chr10 82219781 82220054 + 2 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 13003 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 509-180 chr5 15841629 15841944 + 2 NA intron (NM_001278317, intron 2 of 3) THE1B-int|LTR|ERVL-MaLR -93396 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 445-91 chr16 61512540 61512827 + 2 NA Intergenic Intergenic -456917 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 240-133 chr14 45212714 45212950 + 2 NA intron (NM_018353, intron 13 of 16) MER50|LTR|ERV1 40370 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 295-467 chr8 83321505 83321793 + 2 NA Intergenic L1PA7|LINE|L1 -82109 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 560-160 chr6 166117536 166117886 + 2 NA Intergenic L1M7|LINE|L1 19991 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 287-424 chr8 139668935 139669204 + 2 NA intron (NR_104210, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 34054 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 233-26 chr1 231179886 231180068 + 2 NA intron (NM_001300889, intron 3 of 11) intron (NM_001300889, intron 3 of 11) 7650 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 330-345 chr3 46054740 46055010 + 2 NA Intergenic Intergenic -27392 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 524-277 chr9 31461078 31461511 + 2 NA Intergenic L1MCb|LINE|L1 -79804 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 419-8 chr1 56080066 56080328 + 2 NA Intergenic L2c|LINE|L2 135110 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 458-111 chr18 76105610 76105903 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -17242 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 467-28 chr10 54814823 54815157 + 2 NA intron (NM_001354404, intron 4 of 34) L2c|LINE|L2 -13699 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 382-2 chr1 18267769 18267978 + 2 NA intron (NM_032880, intron 2 of 9) MER58A|DNA|hAT-Charlie 160075 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 505-21 chr1 208727846 208728154 + 2 NA promoter-TSS (NR_146914) promoter-TSS (NR_146914) -688 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 283-232 chr2 80593200 80593364 + 2 NA intron (NM_001282599, intron 9 of 11) intron (NM_001282599, intron 9 of 11) 279903 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 289-129 chr13 97222977 97223255 + 2 NA intron (NM_144778, intron 1 of 8) intron (NM_144778, intron 1 of 8) 783 NM_144778 10150 Hs.657347 NM_144778 ENSG00000139793 MBNL2 MBLL|MBLL39|PRO2032 muscleblind like splicing regulator 2 protein-coding 507-192 chr5 7487089 7487471 + 2 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 91142 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 213-194 chr4 29958261 29958402 + 2 NA Intergenic L1ME4b|LINE|L1 744039 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 476-153 chr2 189757137 189757436 + 2 NA intron (NM_022353, intron 2 of 8) L2|LINE|L2 -5494 NR_102429 101409258 Hs.738558 NR_102429 OSGEPL1-AS1 - OSGEPL1 antisense RNA 1 ncRNA 450-75 chr13 112121106 112121526 + 2 NA Intergenic Intergenic 14197 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 369-208 chr2 116695893 116696203 + 2 NA Intergenic Intergenic -1118643 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 207-103 chr17 50339246 50339433 + 2 NA Intergenic L1MEi|LINE|L1 -6787 NR_110010 64132 Hs.463416 NM_022167 ENSG00000015532 XYLT2 PXYLT2|SOS|XT-II|XT2|xylT-II xylosyltransferase 2 protein-coding 407-145 chr2 115388564 115388904 + 2 NA intron (NM_001321912, intron 4 of 25) L2c|LINE|L2 44919 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 259-119 chr14 60380968 60381150 + 2 NA Intergenic MLT2B4|LTR|ERVL 57863 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 568-53 chr14 67854177 67854675 + 2 NA intron (NM_133509, intron 4 of 10) AluSz6|SINE|Alu 30834 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 258-208 chr2 162140853 162141062 + 2 NA intron (NR_110255, intron 1 of 3) MLT1J|LTR|ERVL-MaLR 11290 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 198-142 chr2 188702418 188702594 + 2 NA Intergenic L1M6|LINE|L1 87617 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 314-532 chr7 45618869 45619042 + 2 NA intron (NM_001281768, intron 4 of 9) L1MA5|LINE|L1 44587 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 322-70 chr10 78861948 78862125 + 2 NA Intergenic Intergenic 205412 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 223-341 chr8 68887798 68887975 + 2 NA Intergenic Intergenic 216304 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 350-244 chr2 140638375 140638578 + 2 NA intron (NM_018557, intron 41 of 90) intron (NM_018557, intron 41 of 90) -51791 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 176-151 chr9 30432076 30432203 + 2 NA Intergenic L1MA3|LINE|L1 -23685 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 351-304 chr3 80944671 80944871 + 2 NA Intergenic L1MA4A|LINE|L1 -49097 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 239-9 chr1 84533160 84533393 + 2 NA intron (NM_001310156, intron 7 of 13) intron (NM_001310156, intron 7 of 13) -26695 NM_005274 2787 Hs.645427 NM_005274 ENSG00000174021 GNG5 - G protein subunit gamma 5 protein-coding 301-199 chr2 47565562 47565845 + 2 NA intron (NM_022055, intron 1 of 1) intron (NM_022055, intron 1 of 1) 4628 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 511-100 chr18 73515895 73516262 + 2 NA Intergenic HERVL-int|LTR|ERVL 191137 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 200-279 chr8 127784791 127784957 + 2 NA Intergenic MER67B|LTR|ERV1 -9659 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 184-168 chr8 73440396 73440539 + 2 NA non-coding (NR_038406, exon 3 of 3) non-coding (NR_038406, exon 3 of 3) 20393 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 338-331 chr3 51847801 51848023 + 2 NA Intergenic L1M4|LINE|L1 -13703 NM_203424 389123 Hs.412294 NM_203424 ENSG00000184345 IQCF2 - IQ motif containing F2 protein-coding 303-367 chr5 102086683 102086843 + 2 NA Intergenic Intergenic 209521 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 346-519 chr9 33749225 33749442 + 2 NA Intergenic LTR12D|LTR|ERV1 -1133 NM_001197097 5646 Hs.654513 NM_002771 ENSG00000010438 PRSS3 MTG|PRSS4|T9|TRY3|TRY4 serine protease 3 protein-coding 551-4 chr1 73297302 73297704 + 2 NA Intergenic Intergenic -8667 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 354-349 chr4 146145689 146145984 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -23923 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 339-244 chr2 15821346 15821676 + 2 NA Intergenic MIR3|SINE|MIR -98888 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 342-55 chr10 20928844 20929181 + 2 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -31410 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 224-288 chr6 159335231 159335414 + 2 NA Intergenic L1MCc|LINE|L1 -48209 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 244-394 chrX 67955138 67955293 + 2 NA Intergenic MIRb|SINE|MIR 410592 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 301-4 chr1 69528703 69528989 + 2 NA Intergenic MER101-int|LTR|ERV1 -38488 NM_001330635 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 392-255 chr5 99923630 99923970 + 2 NA Intergenic Intergenic 389810 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 362-27 chr1 114206106 114206318 + 2 NA Intergenic Intergenic -52343 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 233-263 chr4 68100637 68100855 + 2 NA intron (NM_207407, intron 1 of 9) intron (NM_207407, intron 1 of 9) 29123 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 253-247 chr3 18450447 18450682 + 2 NA intron (NR_125803, intron 1 of 6) intron (NR_125803, intron 1 of 6) -4972 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 561-130 chr3 51035130 51035574 + 2 NA intron (NM_004947, intron 5 of 52) L1MEf|LINE|L1 -349939 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 211-69 chr12 117397428 117397613 + 2 NA Intergenic Intergenic -35718 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 154-87 chr5 40640953 40641036 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -38921 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 298-192 chr19 56540586 56540821 + 2 NA intron (NM_001308440, intron 2 of 6) MER58A|DNA|hAT-Charlie 1755 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 292-322 chr4 93870992 93871227 + 2 NA Intergenic Intergenic 42356 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 290-165 chr16 80532965 80533155 + 2 NA intron (NR_120307, intron 1 of 5) L1MEf|LINE|L1 -7674 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 333-553 chr8 6080734 6081032 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 325665 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 354-43 chr10 23748952 23749167 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 54332 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 293-133 chr15 77168152 77168342 + 2 NA intron (NM_024776, intron 5 of 7) (CA)n|Simple_repeat|Simple_repeat 57157 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 395-15 chr1 172123557 172123825 + 2 NA intron (NR_146559, intron 14 of 20) intron (NR_146559, intron 14 of 20) -15117 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 314-557 chr8 53124425 53124640 + 2 NA Intergenic AluJo|SINE|Alu 127105 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 526-83 chr15 83092143 83092488 + 2 NA Intergenic Intergenic -15330 NM_001353883 53346 Hs.513094 NM_023003 ENSG00000136404 TM6SF1 - transmembrane 6 superfamily member 1 protein-coding 177-48 chr14 46128325 46128441 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 64224 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 217-358 chr8 30640007 30640205 + 2 NA intron (NM_001206847, intron 1 of 2) intron (NM_001206847, intron 1 of 2) 1526 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 612-110 chr5 21403622 21403977 + 2 NA Intergenic MIR|SINE|MIR -55681 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 354-181 chr18 12846772 12847005 + 2 NA intron (NM_080423, intron 2 of 8) intron (NM_080423, intron 2 of 8) -5926 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 344-140 chr14 71250018 71250320 + 2 NA Intergenic Intergenic -70307 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 339-450 chr5 74409579 74409788 + 2 NA intron (NR_126354, intron 2 of 2) LTR88b|LTR|Gypsy? 87197 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 465-101 chr16 87080069 87080376 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger 22438 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 347-134 chr14 60700384 60700592 + 2 NA Intergenic L1MA5A|LINE|L1 23863 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 263-92 chr13 78397948 78398081 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -198108 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 164-17 chr10 121308144 121308260 + 2 NA Intergenic Intergenic 223112 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 461-70 chr12 133125867 133126202 + 2 NA intron (NM_001277291, intron 1 of 1) intron (NM_001277291, intron 1 of 1) 4439 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 491-185 chr4 95869086 95869442 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger 29171 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 269-118 chr14 58891182 58891357 + 2 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 62981 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 323-19 chr1 105440094 105440277 + 2 NA Intergenic MLT2B1|LTR|ERVL 178750 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 170-116 chr5 80170539 80170690 + 2 NA intron (NR_126061, intron 5 of 13) intron (NR_126061, intron 5 of 13) 85434 NM_178276 256987 Hs.288232 NM_178276 ENSG00000164300 SERINC5 C5orf12|TPO1 serine incorporator 5 protein-coding 205-29 chr10 21115041 21115196 + 2 NA intron (NM_001173484, intron 2 of 6) L1ME1|LINE|L1 -58872 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 343-329 chr3 25015172 25015479 + 2 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 186002 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 457-93 chr17 62734598 62734889 + 2 NA intron (NM_001288780, intron 7 of 10) intron (NM_001288780, intron 7 of 10) 28537 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 531-32 chr11 5527871 5528231 + 2 NA Intergenic Intergenic -6266 NR_133006 101927763 NR_133006 OLFM5P - olfactomedin family member 5, pseudogene pseudo 393-87 chr13 106324995 106325241 + 2 NA Intergenic Intergenic -51446 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 255-457 chr9 29179059 29179291 + 2 NA intron (NM_001354574, intron 1 of 5) (AT)n|Simple_repeat|Simple_repeat 33124 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 561-126 chr3 21415251 21415608 + 2 NA 3' UTR (NM_024697, exon 8 of 8) 3' UTR (NM_024697, exon 8 of 8) 9703 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 231-360 chr8 128272216 128272412 + 2 NA Intergenic Intergenic 122198 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 277-314 chr5 30997134 30997332 + 2 NA Intergenic Intergenic -196453 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 265-6 chr1 56998151 56998384 + 2 NA intron (NM_001365793, intron 14 of 14) intron (NM_001365793, intron 14 of 14) -32127 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 273-173 chr17 69933859 69934027 + 2 NA Intergenic L1MA10|LINE|L1 -27764 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 301-371 chr5 124309352 124309616 + 2 NA intron (NR_125774, intron 4 of 5) L1MC4|LINE|L1 129036 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 441-277 chr9 98460410 98460746 + 2 NA intron (NM_005458, intron 6 of 18) L1MEg|LINE|L1 -204929 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 258-196 chr2 116205465 116205622 + 2 NA Intergenic Intergenic 861728 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 275-126 chr16 26587383 26587598 + 2 NA Intergenic Intergenic -479437 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 253-243 chr3 1506672 1506846 + 2 NA Intergenic Intergenic 413735 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 187-180 chr8 127029984 127030108 + 2 NA Intergenic L1MC1|LINE|L1 16892 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 315-466 chr8 36827749 36828010 + 2 NA intron (NM_001031836, intron 10 of 26) intron (NM_001031836, intron 10 of 26) 43505 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 320-569 chr8 121499633 121499808 + 2 NA Intergenic Intergenic -139626 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 222-326 chr6 66637667 66637839 + 2 NA Intergenic FRAM|SINE|Alu 849874 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 252-386 chr6 167547584 167547812 + 2 NA Intergenic (GTTTT)n|Simple_repeat|Simple_repeat -74908 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 381-317 chr5 104500192 104500554 + 2 NA Intergenic LTR86C|LTR|ERVL -599101 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 372-7 chr1 37064086 37064286 + 2 NA Intergenic Intergenic -29671 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 217-287 chr5 19409399 19409546 + 2 NA Intergenic L1PA15|LINE|L1 476800 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 414-311 chr7 81297252 81297508 + 2 NA Intergenic Intergenic 264439 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 344-512 chr9 11804956 11805219 + 2 NA Intergenic L1MA8|LINE|L1 -888298 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 261-402 chr9 10178607 10178778 + 2 NA intron (NM_002839, intron 3 of 45) MER20|DNA|hAT-Charlie 379300 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 395-229 chr3 112766194 112766474 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -17015 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 374-391 chr8 106431308 106431583 + 2 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -16479 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 399-264 chr6 58281408 58281709 + 2 NA Intergenic L1M3|LINE|L1 -320112 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 352-220 chr2 20887888 20888147 + 2 NA Intergenic L1P4|LINE|L1 -64887 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 338-451 chr5 134331152 134331411 + 2 NA intron (NM_001349366, intron 1 of 8) HSMAR2|DNA|TcMar-Mariner 35793 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 172-54 chr2 30838099 30838247 + 2 NA Intergenic L1MB3|LINE|L1 -30727 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 127-32 chr15 66838963 66839030 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 117519 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 589-69 chr2 103546541 103547018 + 2 NA Intergenic Intergenic -562350 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 337-235 chr2 5990814 5991106 + 2 NA Intergenic MIRb|SINE|MIR 8982 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 308-341 chr4 73294263 73294503 + 2 NA Intergenic MER4B-int|LTR|ERV1 -35585 NM_015574 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 116-25 chr22 23078232 23078333 + 2 NA intron (NM_002073, intron 1 of 2) intron (NM_002073, intron 1 of 2) 7763 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 307-399 chr5 133388145 133388419 + 2 NA intron (NM_015082, intron 4 of 15) L1M6|LINE|L1 39424 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 352-339 chr3 166755526 166755833 + 2 NA Intergenic L1MCa|LINE|L1 -143004 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 528-269 chrX 104982844 104983341 + 2 NA intron (NM_017416, intron 2 of 10) intron (NM_017416, intron 2 of 10) 237601 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 573-48 chr12 17387292 17387720 + 2 NA Intergenic L1PA4|LINE|L1 201572 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 531-61 chr14 52120864 52121168 + 2 NA Intergenic L1MC5a|LINE|L1 -51957 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 613-74 chr21 26492047 26492591 + 2 NA intron (NM_052954, intron 2 of 3) intron (NM_052954, intron 2 of 3) 80967 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 579-43 chr14 84417136 84417533 + 2 NA Intergenic L1MA5|LINE|L1 -854598 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 253-163 chr18 4501378 4501556 + 2 NA Intergenic Intergenic -46160 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 598-162 chrX 151581282 151581695 + 2 NA intron (NM_173493, intron 1 of 15) AluJr4|SINE|Alu 17813 NM_173493 139135 Hs.160594 NM_173493 ENSG00000166049 PASD1 CT63|CT64|OXTES1 PAS domain containing repressor 1 protein-coding 270-245 chr3 103087538 103087738 + 2 NA Intergenic Intergenic 436478 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 681-45 chr21 35157035 35157445 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -107942 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 390-104 chr14 71244979 71245356 + 2 NA Intergenic Intergenic -75309 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 350-407 chr5 119841007 119841328 + 2 NA Intergenic HAL1|LINE|L1 211608 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 234 chr1 18297038 18297246 + 2 NA intron (NM_032880, intron 3 of 9) L2b|LINE|L2 -183788 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 374-419 chr9 107191478 107191669 + 2 NA Intergenic LTR16B2|LTR|ERVL -88585 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 255-31 chr10 60050780 60050951 + 2 NA intron (NM_001204403, intron 42 of 43) intron (NM_001204403, intron 42 of 43) -89952 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 356-329 chr3 88188793 88189147 + 2 NA Intergenic Intergenic 39011 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 460-215 chr4 31242873 31243253 + 2 NA Intergenic Intergenic 71919 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 650-75 chr22 32108583 32109174 + 2 NA intron (NM_000343, intron 14 of 14) L3b|LINE|CR1 -13099 NR_040114 23782 Hs.581098 NR_040114 ENSG00000234479 AP1B1P1 ADTB1L1|dJ127L4.2 AP1B1 pseudogene 1 pseudo 429-18 chr1 172287440 172287838 + 2 NA intron (NR_146559, intron 16 of 20) intron (NR_146559, intron 16 of 20) -133046 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 293-261 chr3 64034757 64035009 + 2 NA Intergenic L1MEj|LINE|L1 -10873 NM_001271780 9861 Hs.152536 NM_014814 ENSG00000163636 PSMD6 Rpn7|S10|SGA-113M|p42A|p44S10 proteasome 26S subunit, non-ATPase 6 protein-coding 153-91 chr7 33836888 33837003 + 2 NA Intergenic Intergenic -67970 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 329-518 chr6 165168958 165169198 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 140527 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 298-378 chr5 122957841 122958029 + 2 NA intron (NM_014035, intron 3 of 6) L1M3|LINE|L1 78790 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 157-4 chr1 54658454 54658555 + 2 NA intron (NM_001039464, intron 3 of 23) intron (NM_001039464, intron 3 of 23) 16718 NM_001039464 374977 Hs.412482 NM_198547 ENSG00000184313 MROH7 C1orf175|HEATR8 maestro heat like repeat family member 7 protein-coding 362-404 chr7 51749441 51749783 + 2 NA Intergenic L1PB4|LINE|L1 -356356 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 522-6 chr1 110396272 110396646 + 2 NA Intergenic LTR12C|LTR|ERV1 -5377 NM_001201548 9122 Hs.351306 NM_004696 ENSG00000168679 SLC16A4 MCT4|MCT5 solute carrier family 16 member 4 protein-coding 210-24 chr10 15982673 15982856 + 2 NA Intergenic Intergenic -122231 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 244-396 chrX 77163091 77163256 + 2 NA Intergenic L1MA2|LINE|L1 -148641 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 250-451 chr9 20330552 20330771 + 2 NA Intergenic Intergenic 80577 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 208-67 chr13 37247392 37247562 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -141813 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 242-441 chr9 131605545 131605764 + 2 NA intron (NM_198679, intron 11 of 23) intron (NM_198679, intron 11 of 23) 60131 NM_001365666 642515 NM_001365666 ENSG00000283526 PRRT1B DSPD2|IFITMD8 proline rich transmembrane protein 1B protein-coding 199-227 chr7 103436194 103436311 + 2 NA intron (NR_135802, intron 2 of 17) intron (NR_135802, intron 2 of 17) 6959 NR_120442 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 371-425 chrX 113878259 113878491 + 2 NA intron (NR_131204, intron 1 of 2) L2c|LINE|L2 59843 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 203-54 chr13 83895307 83895489 + 2 NA Intergenic Intergenic -12924 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 167-23 chr10 82891157 82891266 + 2 NA intron (NR_163253, intron 6 of 10) L1ME3B|LINE|L1 -658291 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 344-96 chr12 1439158 1439440 + 2 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -61192 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 247-94 chr12 85338509 85338705 + 2 NA Intergenic L2c|LINE|L2 58387 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 383-178 chr2 23567507 23567855 + 2 NA intron (NM_052920, intron 3 of 13) intron (NM_052920, intron 3 of 13) 182502 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 216-320 chr7 47754829 47755000 + 2 NA Intergenic AluSx|SINE|Alu -6562 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 380-22 chr1 164522852 164523214 + 2 NA Intergenic Intergenic -36327 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 143-68 chr5 98812859 98812970 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 39251 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 329-400 chr4 33927865 33928088 + 2 NA intron (NR_125902, intron 4 of 4) (AGATAG)n|Simple_repeat|Simple_repeat 111917 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 438-25 chr1 210419948 210420244 + 2 NA intron (NM_001122834, intron 7 of 11) L1ME3D|LINE|L1 90730 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 284-298 chr4 134287393 134287573 + 2 NA Intergenic L1MA6|LINE|L1 -85694 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 257-346 chr6 51915888 51916137 + 2 NA intron (NM_138694, intron 37 of 66) intron (NM_138694, intron 37 of 66) 171601 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 390-375 chr8 70386382 70386713 + 2 NA intron (NM_001321703, intron 1 of 22) intron (NM_001321703, intron 1 of 22) 16843 NM_001321707 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 306-324 chr3 112225274 112225447 + 2 NA intron (NM_001320531, intron 12 of 27).2 L1MA5|LINE|L1 68856 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 224-186 chr22 40009512 40009671 + 2 NA intron (NM_138435, intron 1 of 4) L2|LINE|L2 14637 NM_138435 113828 Hs.26192 NM_138435 ENSG00000133477 FAM83F - family with sequence similarity 83 member F protein-coding 145-59 chr4 42924153 42924239 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 30930 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 525-47 chr11 113478688 113479137 + 2 NA Intergenic MIRb|SINE|MIR -3514 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 410-337 chrX 33921873 33922230 + 2 NA Intergenic MER41-int|LTR|ERV1 210279 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 331-162 chr14 68148086 68148392 + 2 NA intron (NM_133509, intron 7 of 10) L1ME1|LINE|L1 324647 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 298-93 chr12 23612680 23612928 + 2 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -28218 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 285-51 chr10 116269635 116269820 + 2 NA intron (NM_145793, intron 2 of 8) intron (NM_145793, intron 2 of 8) 2498 NM_145793 2674 Hs.388347 NM_005264 ENSG00000151892 GFRA1 GDNFR|GDNFRA|GFR-ALPHA-1|RET1L|RETL1|TRNR1 GDNF family receptor alpha 1 protein-coding 184-186 chr9 126121426 126121521 + 2 NA Intergenic Intergenic 154442 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 202-67 chr14 35635546 35635720 + 2 NA intron (NM_014990, intron 30 of 40) intron (NM_014990, intron 30 of 40) 101469 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 520-74 chr13 67996621 67996913 + 2 NA Intergenic (ATGAATA)n|Simple_repeat|Simple_repeat 624380 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 556-49 chr12 41969359 41969737 + 2 NA Intergenic AluSx|SINE|Alu 175326 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 292-416 chr7 104643806 104644027 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 160176 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 343-569 chr8 142058852 142059048 + 2 NA Intergenic Intergenic -117389 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 257-315 chr5 13377727 13377917 + 2 NA Intergenic Intergenic -344936 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 533-240 chr8 137476772 137477270 + 2 NA Intergenic Intergenic -63433 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 335-421 chr5 32765684 32765974 + 2 NA intron (NM_001364460, intron 2 of 6) LTR33|LTR|ERVL 54508 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 388-307 chr6 74204499 74204823 + 2 NA intron (NR_110856, intron 1 of 3) AluJo|SINE|Alu 135210 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 358-498 chr8 130828565 130828763 + 2 NA intron (NM_001115, intron 12 of 17) HUERS-P3-int|LTR|ERV1 212245 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 332-74 chr10 106246171 106246388 + 2 NA Intergenic Intergenic 106114 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 231-349 chr8 77560829 77560982 + 2 NA Intergenic L1MCa|LINE|L1 110208 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 894-36 chr5 116335506 116336087 + 2 NA Intergenic L1MA6|LINE|L1 38774 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 550-103 chr19 52614358 52614724 + 2 NA exon (NM_001277945, exon 6 of 6) exon (NM_001277945, exon 6 of 6) 17857 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 359-304 chr22 34871042 34871344 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 126723 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 481-311 chr8 144984531 144984833 + 2 NA intron (NR_023392, intron 4 of 4) MER2|DNA|TcMar-Tigger -10183 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 320-120 chr12 47487538 47487848 + 2 NA Intergenic MER77B|LTR|ERVL 72685 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 279-72 chr11 115773109 115773305 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -13007 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 187-189 chrX 13318839 13318990 + 2 NA exon (NM_001135995, exon 1 of 1) exon (NM_001135995, exon 1 of 1) 1485 NM_001135995 92552 Hs.382641 NM_001135995 ENSG00000123594 ATXN3L MJDL ataxin 3 like protein-coding 580-130 chr4 18487623 18488123 + 2 NA Intergenic Intergenic -465998 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 311-501 chr8 79107322 79107628 + 2 NA Intergenic Intergenic -224713 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 324-565 chr9 78961157 78961335 + 2 NA Intergenic Intergenic 184420 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 727-54 chr3 28158389 28158924 + 2 NA Intergenic L1M2|LINE|L1 -82963 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 344-383 chr5 43460437 43460709 + 2 NA intron (NM_022483, intron 1 of 2) L1MA1|LINE|L1 23292 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 423-290 chr8 49933062 49933324 + 2 NA intron (NR_135798, intron 1 of 15) L1MB7|LINE|L1 21786 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 357-474 chr9 17977721 17977920 + 2 NA Intergenic L1MA9|LINE|L1 398754 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 508-211 chr6 121880288 121880678 + 2 NA Intergenic Intergenic 444837 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 238-112 chr15 26374516 26374663 + 2 NA Intergenic Intergenic 254501 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 229-307 chr5 79289386 79289542 + 2 NA intron (NM_152405, intron 2 of 10) intron (NM_152405, intron 2 of 10) 53333 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 285-424 chr8 117453082 117453280 + 2 NA Intergenic L1MEg|LINE|L1 -67532 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 270-97 chr13 62886122 62886373 + 2 NA Intergenic L1PA15|LINE|L1 -78888 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 520-191 chr3 95440408 95440772 + 2 NA Intergenic Intergenic 242603 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 182-131 chr5 13333850 13333993 + 2 NA Intergenic L3|LINE|CR1 -301035 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 383-92 chr13 23629169 23629378 + 2 NA intron (NM_001354985, intron 5 of 8) intron (NM_001354985, intron 5 of 8) 49913 NM_001354985 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 183-120 chr5 92720538 92720682 + 2 NA Intergenic L2a|LINE|L2 850733 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 387-292 chr5 115452079 115452281 + 2 NA Intergenic Intergenic 92595 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 311-293 chr20 12311424 12311609 + 2 NA Intergenic Intergenic 393623 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 525-73 chr14 60241779 60242170 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -3776 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 333-138 chr13 106365997 106366270 + 2 NA Intergenic L1ME3Cz|LINE|L1 -10431 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 358-5 chr1 42213050 42213341 + 2 NA intron (NM_001198850, intron 5 of 12) L1PBb|LINE|L1 -48450 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 314-186 chr15 52713807 52714078 + 2 NA Intergenic Intergenic -35308 NM_019600 56204 Hs.152385 NM_019600 ENSG00000047346 FAM214A KIAA1370 family with sequence similarity 214 member A protein-coding 337-539 chr8 87681178 87681406 + 2 NA Intergenic Intergenic 192723 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 405-23 chr10 25390140 25390512 + 2 NA intron (NM_020752, intron 2 of 10) THE1B-int|LTR|ERVL-MaLR -214050 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 309-314 chr21 20987864 20988039 + 2 NA Intergenic Intergenic -10458 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 675-52 chr21 25400990 25401393 + 2 NA intron (NR_024027, intron 4 of 4) MLT2A2|LTR|ERVL 30510 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 337-99 chr11 98534155 98534465 + 2 NA Intergenic Intergenic -486639 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 259-135 chr15 54134907 54135081 + 2 NA intron (NM_001329919, intron 2 of 31) L1MA9|LINE|L1 122346 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 505-57 chr12 19810569 19810977 + 2 NA Intergenic Intergenic -203912 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 311-486 chr8 20837751 20837919 + 2 NA Intergenic Intergenic -115798 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 203-132 chr20 24024914 24025099 + 2 NA Intergenic Intergenic -36227 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 326-330 chr3 59455612 59455782 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie 202800 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 293-131 chr15 62208951 62209112 + 2 NA Intergenic LTR27D|LTR|ERV1 -5713 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 302-450 chr8 82157402 82157699 + 2 NA Intergenic L1MC1|LINE|L1 -315264 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 183-162 chr8 107361447 107361578 + 2 NA intron (NM_001199859, intron 1 of 8) (ATATAT)n|Simple_repeat|Simple_repeat -24997 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 939-10 chr11 77261575 77262214 + 2 NA intron (NM_182833, intron 10 of 16) intron (NM_182833, intron 10 of 16) 39772 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 354-427 chr7 40313257 40313524 + 2 NA intron (NM_024728, intron 8 of 14) intron (NM_024728, intron 8 of 14) 178414 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 326-526 chr8 71237430 71237652 + 2 NA intron (NM_001370336, intron 12 of 17) intron (NM_001370336, intron 12 of 17) 119165 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 315-275 chr20 33544097 33544314 + 2 NA intron (NM_001032999, intron 1 of 10) L2a|LINE|L2 -18160 NM_005093 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 503-176 chr20 56310300 56310775 + 2 NA Intergenic Intergenic -48437 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 353-22 chr1 115163535 115163792 + 2 NA Intergenic L1ME2|LINE|L1 -74160 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 261-270 chr4 26833327 26833495 + 2 NA Intergenic L1ME1|LINE|L1 26833 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 248-414 chr8 126857910 126858124 + 2 NA Intergenic Intergenic -155137 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 194-52 chr14 27189331 27189514 + 2 NA Intergenic Intergenic 280780 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 585-126 chr5 79072989 79073369 + 2 NA intron (NM_001178005, intron 1 of 6) AluSx1|SINE|Alu 3412 NM_001178005 23743 Hs.114172 NM_017614 ENSG00000132840 BHMT2 - betaine--homocysteine S-methyltransferase 2 protein-coding 184-76 chr19 9092944 9093064 + 2 NA promoter-TSS (NM_001004456) promoter-TSS (NM_001004456) -241 NM_001004456 125963 Hs.553577 NM_001004456 ENSG00000170929 OR1M1 OR19-5|OR19-6 olfactory receptor family 1 subfamily M member 1 protein-coding 160-24 chr12 119654180 119654286 + 2 NA Intergenic L1MEf|LINE|L1 -13900 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 278-469 chrX 122998041 122998260 + 2 NA Intergenic Intergenic -186093 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 341-172 chr15 87397074 87397283 + 2 NA Intergenic L1MCc|LINE|L1 -179751 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 274-252 chr22 43552859 43553023 + 2 NA intron (NM_198856, intron 25 of 29) intron (NM_198856, intron 25 of 29) 36687 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 397-333 chr8 68041222 68041462 + 2 NA intron (NM_024870, intron 7 of 39) intron (NM_024870, intron 7 of 39) 89296 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 463-122 chr19 29103175 29103485 + 2 NA Intergenic Intergenic 100775 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 313-96 chr11 113360774 113361000 + 2 NA intron (NM_001318533, intron 18 of 21) Charlie4z|DNA|hAT-Charlie -26892 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 829-30 chr4 130922202 130923042 + 2 NA Intergenic L1PA15-16|LINE|L1 546261 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 606-108 chr3 139179989 139180392 + 2 NA Intergenic L1MA9|LINE|L1 53332 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 353-244 chr2 55805773 55805965 + 2 NA Intergenic Intergenic -112025 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 351-138 chr14 83194423 83194765 + 2 NA Intergenic Intergenic 551962 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 383-355 chr7 42311908 42312150 + 2 NA Intergenic L1MC4a|LINE|L1 -74820 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 349-480 chr7 110803789 110803986 + 2 NA intron (NM_001350963, intron 5 of 5) MER5A|DNA|hAT-Charlie -287119 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 483-98 chr18 74425632 74426028 + 2 NA Intergenic Intergenic 16382 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 365-130 chr15 48834165 48834464 + 2 NA intron (NM_203349, intron 11 of 11) L2c|LINE|L2 -23245 NM_014985 22995 Hs.443005 NM_014985 ENSG00000103995 CEP152 MCPH4|MCPH9|SCKL5 centrosomal protein 152 protein-coding 253-59 chr10 106326083 106326241 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 185997 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 309-451 chr5 106777727 106777931 + 2 NA Intergenic AluYk4|SINE|Alu 233185 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 395-315 chr7 80554351 80554738 + 2 NA Intergenic L1PB3|LINE|L1 -42480 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 219-108 chr15 25123356 25123529 + 2 NA TTS (NR_023915) TTS (NR_023915) 6897 NR_023915 3653 Hs.555970 NR_023915 IPW NCRNA00002 imprinted in Prader-Willi syndrome ncRNA 361-18 chr1 161003451 161003741 + 2 NA intron (NM_001348091, intron 1 of 8) AluSx1|SINE|Alu 17556 NM_001348091 50848 Hs.517293 NM_016946 ENSG00000158769 F11R CD321|JAM|JAM1|JAMA|JCAM|KAT|PAM-1 F11 receptor protein-coding 630-145 chr8 132880297 132880732 + 2 NA intron (NM_003235, intron 5 of 47) intron (NM_003235, intron 5 of 47) 13556 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 139-66 chr4 156016432 156016505 + 2 NA Intergenic Intergenic -62602 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 360-387 chr5 157205192 157205486 + 2 NA intron (NM_005546, intron 1 of 16) MIRb|SINE|MIR 24443 NM_005546 3702 Hs.558348 NM_005546 ENSG00000113263 ITK EMT|LPFS1|LYK|PSCTK2 IL2 inducible T cell kinase protein-coding 207-307 chr8 143194150 143194308 + 2 NA Intergenic MIR|SINE|MIR -18989 NM_001301772 338328 Hs.426410 NM_178172 ENSG00000277494 GPIHBP1 GPI-HBP1|HYPL1D glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1 protein-coding 314-205 chr16 36082865 36083079 + 2 NA Intergenic ALR/Alpha|Satellite|centr 336420 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 289-3 chr1 36940562 36940711 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 93879 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 128-12 chr11 41945034 41945122 + 2 NA Intergenic Intergenic 140380 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 372-16 chr1 78908448 78908753 + 2 NA intron (NM_022159, intron 12 of 14) intron (NM_022159, intron 12 of 14) 98130 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 167-76 chr3 7226971 7227083 + 2 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) 308257 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 209-24 chr1 227229971 227230108 + 2 NA intron (NM_001366019, intron 2 of 36) L1MEg|LINE|L1 88453 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 267-190 chr2 75020002 75020173 + 2 NA Intergenic Intergenic 61444 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 654-56 chr19 39276410 39276761 + 2 NA Intergenic LTR47A|LTR|ERVL 8068 NM_172138 282616 Hs.567792 NM_172138 ENSG00000183709 IFNL2 IL-28A|IL28A interferon lambda 2 protein-coding 372-322 chr3 34570285 34570531 + 2 NA Intergenic L1ME3A|LINE|L1 771778 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 399-219 chr3 163222603 163222821 + 2 NA intron (NR_033945, intron 2 of 6) Tigger2|DNA|TcMar-Tigger 80589 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 264-88 chr12 14391437 14391633 + 2 NA intron (NM_181352, intron 1 of 14) MIRc|SINE|MIR 6254 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 336-90 chr11 40658350 40658542 + 2 NA intron (NM_020929, intron 1 of 4) LTR26B|LTR|ERV1 -365316 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 323-567 chr8 137227028 137227210 + 2 NA Intergenic LTR28C|LTR|ERV1 186469 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 364-431 chr8 34101924 34102124 + 2 NA Intergenic Intergenic -501918 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 211-43 chr10 111805870 111806045 + 2 NA Intergenic Intergenic 377808 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 389-274 chr4 151986475 151986703 + 2 NA Intergenic Intergenic -114164 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 333-79 chr11 37952391 37952663 + 2 NA intron (NR_135110, intron 2 of 2) intron (NR_135110, intron 2 of 2) 13926 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 257-3 chr1 49779230 49779390 + 2 NA intron (NM_001323575, intron 2 of 12) MER76|LTR|ERVL 244644 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 169-34 chr14 20649046 20649186 + 2 NA Intergenic Intergenic -7425 NM_001001968 341799 Hs.513132 NM_001001968 ENSG00000181803 OR6S1 OR14-37|OR6S1Q olfactory receptor family 6 subfamily S member 1 protein-coding 880-23 chr2 238688924 238689407 + 2 NA Intergenic Intergenic -133666 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 268-327 chr5 174407377 174407597 + 2 NA intron (NR_125806, intron 1 of 5) intron (NR_125806, intron 1 of 5) 71133 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 472-202 chr3 5507916 5508289 + 2 NA Intergenic Intergenic -257847 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 387-51 chr11 15469247 15469485 + 2 NA Intergenic L1MB1|LINE|L1 -174519 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 449-198 chr4 170478663 170479023 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 252252 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 328-314 chr20 35399052 35399299 + 2 NA intron (NM_001184977, intron 1 of 7) MIR|SINE|MIR 12798 NM_018244 55245 Hs.726290 NM_018244 ENSG00000101019 UQCC1 BFZB|C20orf44|CBP3|UQCC ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 220-220 chr3 37891954 37892067 + 2 NA intron (NM_001008392, intron 1 of 7) L1MC4a|LINE|L1 30130 NM_005808 10217 Hs.475963 NM_005808 ENSG00000144677 CTDSPL C3orf8|HYA22|PSR1|RBSP3|SCP3 CTD small phosphatase like protein-coding 319-87 chr11 35877877 35878048 + 2 NA Intergenic AluJb|SINE|Alu -66019 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 255-140 chr16 20817750 20817969 + 2 NA intron (NM_030941, intron 5 of 19) L2a|LINE|L2 11332 NM_001144924 81691 Hs.177926 NM_030941 ENSG00000005189 REXO5 NEF-sp RNA exonuclease 5 protein-coding 304-326 chr3 17619112 17619281 + 2 NA intron (NM_001349088, intron 2 of 21) L1MC4a|LINE|L1 80824 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 338-204 chr16 79058141 79058420 + 2 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 542457 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 572-20 chr10 111036756 111037118 + 2 NA Intergenic MER106A|DNA|hAT-Charlie -40092 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 219-129 chr17 16552452 16552615 + 2 NA exon (NM_001346167, exon 6 of 6) exon (NM_001346167, exon 6 of 6) 16671 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 285-226 chr2 181246441 181246693 + 2 NA intron (NR_130784, intron 2 of 4) intron (NR_130784, intron 2 of 4) 59085 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 524-89 chr17 53199460 53199961 + 2 NA Intergenic L1MCa|LINE|L1 214205 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 290-315 chr4 70038760 70038953 + 2 NA Intergenic L1PA15-16|LINE|L1 10397 NM_000200 3347 Hs.654442 NM_000200 ENSG00000205649 HTN3 HIS2|HTN2|HTN5|PB histatin 3 protein-coding 404-242 chr4 160568651 160569023 + 2 NA Intergenic Intergenic -791053 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 199-43 chr11 98105235 98105395 + 2 NA Intergenic L1ME4c|LINE|L1 -915634 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 259-212 chr2 126040176 126040384 + 2 NA Intergenic L2a|LINE|L2 77705 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 366-486 chrX 81703491 81703787 + 2 NA Intergenic Intergenic 501537 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 435-271 chrX 24320166 24320454 + 2 NA Intergenic L1MC1|LINE|L1 -6917 NM_001136233 170067 Hs.716893 NM_001136233 SUPT20HL2 FAM48B1|FAM48B2 SUPT20H like 2 protein-coding 306-295 chr3 9144768 9145005 + 2 NA intron (NM_014850, intron 1 of 21) MIRb|SINE|MIR -47607 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 432-67 chr12 115587255 115587653 + 2 NA Intergenic L1ME1|LINE|L1 561200 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 289-497 chrX 30044941 30045193 + 2 NA Intergenic Intergenic -170496 NM_002364 4113 Hs.113824 NM_002364 ENSG00000099399 MAGEB2 CT3.2|DAM6|MAGE-XP-2 MAGE family member B2 protein-coding 128-89 chrX 129218683 129218760 + 2 NA Intergenic L3|LINE|CR1 304769 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 232-179 chr2 112796726 112796920 + 2 NA Intergenic Intergenic -11425 NM_000575 3552 Hs.1722 NM_000575 ENSG00000115008 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1 alpha protein-coding 364-480 chrX 54663534 54663866 + 2 NA Intergenic L1M4|LINE|L1 133481 NM_019067 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 647-54 chr2 175647785 175648316 + 2 NA Intergenic L1PREC2|LINE|L1 354217 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 177-112 chr4 40977293 40977427 + 2 NA intron (NM_004307, intron 6 of 17) AluSq2|SINE|Alu -120168 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 323-445 chr6 5944691 5945012 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner 59193 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 296-464 chr8 81722984 81723263 + 2 NA Intergenic Intergenic -1819 NR_033193 79752 Hs.655453 NM_024699 ENSG00000104231 ZFAND1 - zinc finger AN1-type containing 1 protein-coding 261-110 chr14 74416772 74417015 + 2 NA intron (NM_001105579, intron 1 of 3) MIR|SINE|MIR 9317 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 278-345 chr5 85429922 85430078 + 2 NA Intergenic Intergenic -852444 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 803-51 chr6 145694993 145695471 + 2 NA intron (NM_001360064, intron 1 of 3) L1M1|LINE|L1 -8355 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 353-267 chr2 188406823 188407027 + 2 NA intron (NM_016315, intron 2 of 11) L1M3e|LINE|L1 109433 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 292-244 chr2 208243208 208243482 + 2 NA intron (NM_001282386, intron 6 of 9) intron (NM_001282386, intron 6 of 9) 10958 NM_001282387 3417 Hs.593422 NM_005896 ENSG00000138413 IDH1 HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD isocitrate dehydrogenase (NADP(+)) 1, cytosolic protein-coding 235-67 chr11 59181063 59181247 + 2 NA intron (NM_015177, intron 1 of 8) intron (NM_015177, intron 1 of 8) 9023 NM_015177 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 445-164 chr21 45138646 45138911 + 2 NA intron (NR_027673, intron 3 of 12) intron (NR_027673, intron 3 of 12) -13752 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 462-191 chr3 192413636 192413907 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -4722 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 326-245 chr2 78214113 78214419 + 2 NA intron (NR_110288, intron 1 of 3) L1MA3|LINE|L1 76465 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 234-172 chr2 79240170 79240376 + 2 NA Intergenic L1PA15|LINE|L1 -80520 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 347-4 chr1 38701246 38701513 + 2 NA Intergenic Intergenic 158393 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 334-484 chr7 4469105 4469344 + 2 NA Intergenic Intergenic -213071 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 492-274 chr8 140023336 140023739 + 2 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 76998 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 497-242 chr5 178700729 178701106 + 2 NA Intergenic Intergenic 29742 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 269-286 chr4 96508525 96508674 + 2 NA intron (NR_147149, intron 2 of 3) L1MEc|LINE|L1 197896 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 361-188 chr18 53995389 53995576 + 2 NA Intergenic Intergenic 226930 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 761-68 chr7 87772078 87772578 + 2 NA intron (NM_138290, intron 8 of 11) intron (NM_138290, intron 8 of 11) -59005 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 381-300 chr5 22663842 22664139 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 189354 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 243-325 chr4 71955710 71955925 + 2 NA Intergenic Intergenic -75987 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 325-198 chr16 54485514 54485732 + 2 NA Intergenic AluJr|SINE|Alu -114924 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 215-202 chr3 117296910 117297070 + 2 NA Intergenic Intergenic 375559 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 226-172 chr2 112806351 112806526 + 2 NA Intergenic Intergenic -21040 NM_000575 3552 Hs.1722 NM_000575 ENSG00000115008 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1 alpha protein-coding 203-239 chr8 122412146 122412297 + 2 NA Intergenic L2|LINE|L2 156423 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 531-259 chr9 12011988 12012295 + 2 NA Intergenic L1MB1|LINE|L1 -681244 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 546-139 chr3 6307484 6307906 + 2 NA Intergenic MER11D|LTR|ERVK 497754 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 300-392 chr6 78551074 78551364 + 2 NA Intergenic (A)n|Simple_repeat|Simple_repeat -11910 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 321-162 chr14 34050272 34050564 + 2 NA Intergenic Intergenic -99344 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 299-33 chr1 227956308 227956515 + 2 NA Intergenic L1MD2|LINE|L1 -8479 NM_003395 7483 Hs.149504 NM_003395 ENSG00000143816 WNT9A WNT14 Wnt family member 9A protein-coding 273-406 chr6 156195447 156195613 + 2 NA Intergenic L1M8|LINE|L1 -183220 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 302-314 chr4 33685158 33685433 + 2 NA Intergenic Intergenic 354598 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 393-232 chr3 190048379 190048717 + 2 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 72349 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 241-56 chr11 18868940 18869124 + 2 NA Intergenic Intergenic 65970 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 211-126 chr19 30826029 30826179 + 2 NA Intergenic Intergenic -341406 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 230-395 chr9 19425680 19425821 + 2 NA intron (NM_001010887, intron 3 of 5) intron (NM_001010887, intron 3 of 5) 16741 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 337-190 chr16 12518887 12519137 + 2 NA intron (NM_032167, intron 19 of 20) intron (NM_032167, intron 19 of 20) -201309 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 279-164 chr2 16485198 16485442 + 2 NA Intergenic MIR|SINE|MIR 180514 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 195-227 chr7 56692619 56692777 + 2 NA Intergenic AluSg|SINE|Alu 120038 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 553-143 chr21 21732449 21732968 + 2 NA intron (NR_038872, intron 1 of 2) MER46C|DNA|TcMar-Tigger 4611 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 234-286 chr4 125960399 125960594 + 2 NA Intergenic L1MA9|LINE|L1 453237 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 113-48 chr7 33642637 33642707 + 2 NA Intergenic Intergenic -262243 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 372-148 chr14 67149981 67150275 + 2 NA intron (NM_001024218, intron 17 of 21) LTR37-int|LTR|ERV1 -39312 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 205-236 chr6 34497754 34497899 + 2 NA intron (NM_020804, intron 1 of 9) intron (NM_020804, intron 1 of 9) -17046 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 251-380 chr7 120632419 120632572 + 2 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 225649 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 502-132 chr2 22070745 22071063 + 2 NA Intergenic L1MA2|LINE|L1 -360252 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 186-140 chr6 73884945 73885123 + 2 NA Intergenic Intergenic -184417 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 215-168 chr20 8690377 8690532 + 2 NA intron (NM_182734, intron 10 of 32) LTR8|LTR|ERV1 -140731 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 189-64 chr16 13811849 13811977 + 2 NA Intergenic Intergenic -108244 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 406-53 chr11 103652310 103652682 + 2 NA Intergenic LTR8B|LTR|ERV1 -197410 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 232-330 chr6 122057521 122057709 + 2 NA Intergenic LTR16E2|LTR|ERVL -341936 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 203-61 chr14 57017112 57017279 + 2 NA Intergenic Intergenic 204037 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 208-3 chr1 45146880 45147046 + 2 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 59642 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 439-119 chr19 36961112 36961518 + 2 NA intron (NM_001204839, intron 5 of 8) L1M2|LINE|L1 44983 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 360-4 chr1 34039122 34039431 + 2 NA intron (NM_052896, intron 2 of 69) MLT1I|LTR|ERVL-MaLR 125998 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 303-171 chr17 82738947 82739121 + 2 NA intron (NM_022158, intron 2 of 5) AluSx1|SINE|Alu 3419 NM_022158 64122 Hs.151135 NM_022158 ENSG00000167363 FN3K - fructosamine 3 kinase protein-coding 188-129 chr3 38753746 38753919 + 2 NA intron (NM_006514, intron 10 of 26) intron (NM_006514, intron 10 of 26) 40178 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 221-172 chr22 36110051 36110259 + 2 NA Intergenic Intergenic 50600 NM_145639 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 293-65 chr11 78870199 78870394 + 2 NA intron (NM_001098816, intron 9 of 33) intron (NM_001098816, intron 9 of 33) -295432 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 289-247 chr2 166480990 166481277 + 2 NA intron (NR_045628, intron 1 of 25) MIRb|SINE|MIR 5838 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 331-396 chr4 137817048 137817365 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 271475 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 518-145 chr2 142947763 142948245 + 2 NA intron (NM_001199241, intron 5 of 14) intron (NM_001199241, intron 5 of 14) 70340 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 204-50 chr12 11986439 11986559 + 2 NA Intergenic Kanga1c|DNA|TcMar-Tc2 -63362 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 771-34 chr17 68344614 68345076 + 2 NA intron (NM_001352909, intron 3 of 10) intron (NM_001352909, intron 3 of 10) 52710 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 306-174 chr15 92556166 92556441 + 2 NA Intergenic L1MA7|LINE|L1 15960 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 789-9 chr12 9911120 9911546 + 2 NA intron (NM_207375, intron 4 of 4) LTR10B2|LTR|ERV1 21037 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 486-153 chr2 131427007 131427446 + 2 NA Intergenic Intergenic 17668 NR_002826 401010 Hs.452369 NR_002826 NOC2LP2 - NOC2 like nucleolar associated transcriptional repressor pseudogene 2 pseudo 240-240 chr2 154668389 154668561 + 2 NA Intergenic L1ME3G|LINE|L1 -30106 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 342-278 chr20 11367352 11367525 + 2 NA Intergenic L1ME3A|LINE|L1 -94055 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 306-471 chr7 53902990 53903289 + 2 NA Intergenic L2a|LINE|L2 -91208 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 598-79 chr2 198185152 198185612 + 2 NA Intergenic Intergenic 189715 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 541-233 chr8 81580204 81580553 + 2 NA Intergenic Intergenic -48988 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 539-194 chr7 67750303 67750786 + 2 NA Intergenic Intergenic -269709 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 242-237 chr3 79178168 79178339 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -158794 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 426-81 chr15 58326564 58326788 + 2 NA Intergenic L1PA16|LINE|L1 -105315 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 283-156 chr16 13292701 13292889 + 2 NA Intergenic Intergenic 391197 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 625-20 chr11 26868017 26868530 + 2 NA Intergenic Intergenic -125839 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 330-359 chr3 115515373 115515696 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -107976 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 257-58 chr11 17795490 17795660 + 2 NA intron (NR_104040, intron 11 of 11) intron (NR_104040, intron 11 of 11) 59627 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 254-206 chr2 190829076 190829256 + 2 NA Intergenic LTR88b|LTR|Gypsy? -51655 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 160-28 chr14 37085640 37085785 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -86314 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 202-156 chr3 20760124 20760309 + 2 NA Intergenic HAL1|LINE|L1 417748 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 247-98 chr12 133038229 133038452 + 2 NA intron (NM_001289972, intron 1 of 4) intron (NM_001289972, intron 1 of 4) 758 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 280-404 chr8 68479477 68479711 + 2 NA intron (NR_146186, intron 4 of 12) intron (NR_146186, intron 4 of 12) -148103 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 469-8 chr1 69030399 69030710 + 2 NA Intergenic L1MA4A|LINE|L1 -25344 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 128-52 chr5 112572665 112572755 + 2 NA Intergenic LTR101_Mam|LTR|ERVL -55726 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 356-185 chr16 68878461 68878679 + 2 NA intron (NM_024562, intron 6 of 17) L1MC4|LINE|L1 35039 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 326-461 chr6 82760552 82760780 + 2 NA Intergenic L1PB2|LINE|L1 305175 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 444-185 chr5 5081146 5081566 + 2 NA Intergenic Intergenic -3045 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 428-75 chr15 35265208 35265620 + 2 NA Intergenic Intergenic 28088 NR_003144 723972 Hs.631698 NR_003144 ENSG00000259516 ANP32AP1 - acidic nuclear phosphoprotein 32 family member A pseudogene 1 pseudo 312-324 chr3 44902893 44903077 + 2 NA intron (NM_003241, intron 8 of 13) L1MD|LINE|L1 28377 NM_003241 7047 Hs.438265 NM_003241 ENSG00000163810 TGM4 TGP|hTGP transglutaminase 4 protein-coding 243-410 chr7 18397257 18397443 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -98360 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 385-222 chr21 21892635 21892855 + 2 NA Intergenic L1M2|LINE|L1 145760 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 228-152 chr2 17116967 17117142 + 2 NA Intergenic L1MC5a|LINE|L1 401386 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 430-237 chr5 22547483 22547752 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 305727 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 259-172 chr18 78707686 78707884 + 2 NA Intergenic L1MD2|LINE|L1 -272490 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 176-30 chr14 88120086 88120203 + 2 NA Intergenic Intergenic -93832 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 338-282 chr2 173711848 173712028 + 2 NA Intergenic Intergenic 251942 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 244-374 chr8 91710225 91710422 + 2 NA Intergenic L1ME1|LINE|L1 307357 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 379-152 chr2 23111500 23111700 + 2 NA Intergenic Intergenic -273579 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 329-94 chr11 72499228 72499453 + 2 NA Intergenic L1MC1|LINE|L1 -64656 NM_001258394 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 676-39 chr15 61658611 61659114 + 2 NA Intergenic L1MEd|LINE|L1 -71056 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 545-27 chr10 84240383 84240788 + 2 NA intron (NM_015613, intron 1 of 3) intron (NM_015613, intron 1 of 3) 961 NM_015613 26103 Hs.226000 NM_015613 ENSG00000148602 LRIT1 FIGLER9|LRRC21|PAL leucine rich repeat, Ig-like and transmembrane domains 1 protein-coding 1196-3 chr14 71910970 71911931 + 2 NA Intergenic LTR82B|LTR|ERVL -20721 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 493-154 chr2 101125826 101126159 + 2 NA intron (NM_001102426, intron 1 of 19) MSTB1|LTR|ERVL-MaLR 25455 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 280-209 chr2 126525581 126525858 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -130216 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 321-538 chr8 5509642 5509862 + 2 NA Intergenic (TATATTTA)n|Simple_repeat|Simple_repeat -514838 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 430-41 chr10 92855579 92855976 + 2 NA intron (NM_001319195, intron 1 of 21) L1M4b|LINE|L1 7257 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 348-255 chr20 6283529 6283837 + 2 NA Intergenic L1MEg|LINE|L1 -143049 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 358-162 chr17 74727791 74728069 + 2 NA intron (NM_175738, intron 1 of 8) (GT)n|Simple_repeat|Simple_repeat -8630 NM_001330471 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 316-276 chr2 105205136 105205436 + 2 NA Intergenic L1MB2|LINE|L1 -36457 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 324-329 chr22 27347182 27347410 + 2 NA Intergenic L1ME4a|LINE|L1 36645 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 330-24 chr1 101870851 101871098 + 2 NA intron (NM_058170, intron 1 of 5) (A)n|Simple_repeat|Simple_repeat -1038 NR_033424 94236 Hs.606193 NR_033424 DNAJA1P5 HEJ1 DnaJ heat shock protein family (Hsp40) member A1 pseudogene 5 pseudo 799-51 chr7 35460397 35461126 + 2 NA Intergenic Intergenic 146906 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 318-562 chr8 136220322 136220576 + 2 NA Intergenic Intergenic -310349 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 315-107 chr12 71614328 71614554 + 2 NA intron (NM_144982, intron 30 of 34) intron (NM_144982, intron 30 of 34) 49407 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 273-472 chr9 101622343 101622573 + 2 NA intron (NM_133445, intron 5 of 8) intron (NM_133445, intron 5 of 8) -27489 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 355-178 chr16 6331201 6331517 + 2 NA intron (NM_018723, intron 2 of 15) AluSx3|SINE|Alu 311656 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 329-44 chr10 20213734 20214017 + 2 NA intron (NM_032812, intron 10 of 13) L1MEd|LINE|L1 -338095 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 442-128 chr2 49590782 49591130 + 2 NA Intergenic Intergenic 383247 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 225-145 chr2 16452410 16452567 + 2 NA Intergenic Intergenic 213346 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 418-112 chr2 51448938 51449292 + 2 NA intron (NR_135237, intron 4 of 10) MER34B-int|LTR|ERV1 416514 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 432-205 chr4 100482689 100483029 + 2 NA intron (NM_001159694, intron 1 of 10) intron (NM_001159694, intron 1 of 10) 35163 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 429-56 chr11 81709215 81709518 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 181470 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 362-166 chr15 27110308 27110629 + 2 NA intron (NM_001270873, intron 3 of 5) L1MCa|LINE|L1 50851 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 364-154 chr16 49493887 49494073 + 2 NA intron (NM_001271620, intron 7 of 7) intron (NM_001271620, intron 7 of 7) 24605 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 326-115 chr12 4261633 4261798 + 2 NA intron (NR_149145, intron 1 of 3) intron (NR_149145, intron 1 of 3) -12047 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 284-206 chr2 121853066 121853322 + 2 NA Intergenic AluJo|SINE|Alu 97543 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 277-23 chr1 173461375 173461537 + 2 NA promoter-TSS (NR_125960) promoter-TSS (NR_125960) -94 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 320-72 chr10 117030487 117030713 + 2 NA intron (NM_001258300, intron 2 of 17) L1MA2|LINE|L1 -25023 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 391-8 chr1 69207784 69208035 + 2 NA Intergenic L2a|LINE|L2 152011 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 435-36 chr10 75322494 75322829 + 2 NA intron (NR_038226, intron 2 of 3) AluJr|SINE|Alu 26278 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 364-12 chr1 74980183 74980527 + 2 NA Intergenic Intergenic -148079 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 406-158 chr2 215732897 215733232 + 2 NA intron (NR_037195, intron 5 of 9) L1MEd|LINE|L1 15021 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 184-118 chr3 195327958 195328104 + 2 NA intron (NM_012287, intron 8 of 22) intron (NM_012287, intron 8 of 22) -56872 NM_152531 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 172-97 chr4 183387450 183387576 + 2 NA Intergenic Intergenic -57123 NM_001317343 55602 Hs.592508 NM_017632 ENSG00000168564 CDKN2AIP CARF CDKN2A interacting protein protein-coding 263-301 chr4 105825551 105825787 + 2 NA intron (NR_125927, intron 1 of 3) intron (NR_125927, intron 1 of 3) 1503 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 397-308 chr7 56269152 56269453 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -152885 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 156-30 chr13 90513778 90513882 + 2 NA intron (NR_120414, intron 3 of 5) intron (NR_120414, intron 3 of 5) 20542 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 570-209 chr9 80269885 80270290 + 2 NA Intergenic Intergenic 295064 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 514-185 chr3 53981306 53981629 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -89608 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 244-398 chrX 94499182 94499393 + 2 NA Intergenic Intergenic 563939 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 179-42 chr2 16981070 16981194 + 2 NA Intergenic Intergenic -315298 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 120-5 chr1 175737343 175737426 + 2 NA intron (NM_003285, intron 1 of 22) MIR|SINE|MIR 6211 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 342-496 chr7 89011972 89012256 + 2 NA intron (NM_181646, intron 1 of 3) THE1D-int|LTR|ERVL-MaLR -216377 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 161-84 chr5 43920185 43920308 + 2 NA Intergenic L1M1|LINE|L1 -317016 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 310-20 chr1 165558099 165558312 + 2 NA intron (NM_001005214, intron 1 of 1) intron (NM_001005214, intron 1 of 1) 13964 NM_001005214 440699 Hs.664975 NM_001005214 ENSG00000162763 LRRC52 - leucine rich repeat containing 52 protein-coding 225-121 chr17 10252456 10252666 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -53955 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 579-118 chr4 95588850 95589291 + 2 NA Intergenic Intergenic -40097 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 540-170 chr5 13157525 13157871 + 2 NA Intergenic Intergenic -124812 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 267-298 chr4 104682699 104682905 + 2 NA intron (NR_125926, intron 8 of 9) intron (NR_125926, intron 8 of 9) -187908 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 284-346 chr6 46542379 46542548 + 2 NA Intergenic L1MA2|LINE|L1 -50396 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 363-455 chr8 129687181 129687399 + 2 NA Intergenic Intergenic -7051 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 676-53 chr2 2247382 2247893 + 2 NA intron (NM_015025, intron 2 of 24) L1MA2|LINE|L1 -71595 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 499-242 chr7 52556477 52556888 + 2 NA Intergenic Intergenic -478951 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 616-140 chr5 174800851 174801405 + 2 NA Intergenic Intergenic 49394 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 445-13 chr1 226994668 226995012 + 2 NA exon (NM_001366010, exon 34 of 35) exon (NM_001366010, exon 34 of 35) 54546 NM_020247 56997 Hs.118241 NM_020247 ENSG00000163050 COQ8A ADCK3|ARCA2|CABC1|COQ10D4|COQ8|SCAR9 coenzyme Q8A protein-coding 351-309 chr3 100651700 100652003 + 2 NA intron (NM_001308362, intron 5 of 9) Tigger5b|DNA|TcMar-Tigger 16313 NM_001308362 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 223-372 chr9 107182298 107182454 + 2 NA Intergenic L1MA5|LINE|L1 -79388 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 275-338 chr7 75664154 75664359 + 2 NA intron (NM_005338, intron 1 of 30) (TA)n|Simple_repeat|Simple_repeat 74685 NM_005338 3092 Hs.329266 NM_005338 ENSG00000127946 HIP1 HIP-I|ILWEQ|SHON|SHONbeta|SHONgamma huntingtin interacting protein 1 protein-coding 358-109 chr13 84517673 84517892 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) -265872 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 115-34 chr5 4279510 4279598 + 2 NA Intergenic Intergenic -493927 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 453-152 chr22 49551763 49552077 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -8454 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 198-214 chr6 51177040 51177217 + 2 NA Intergenic L2b|LINE|L2 358257 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 491-267 chr8 126707431 126707747 + 2 NA Intergenic MER20|DNA|hAT-Charlie -149111 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 372-349 chr4 18517542 18517819 + 2 NA Intergenic Intergenic -495805 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 231-200 chr21 30131477 30131636 + 2 NA Intergenic Intergenic 35249 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 309-455 chr5 129214352 129214603 + 2 NA Intergenic L1MA8|LINE|L1 116789 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 434-110 chr17 68557729 68558118 + 2 NA intron (NM_017565, intron 1 of 10) MLT1E2|LTR|ERVL-MaLR 504 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 230-304 chr5 105728155 105728371 + 2 NA Intergenic L1ME2|LINE|L1 628789 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 357-466 chr8 135923573 135923915 + 2 NA Intergenic Intergenic 466288 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 358-426 chr7 13370925 13371134 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 615485 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 262-270 chr3 22326545 22326728 + 2 NA Intergenic Intergenic 369497 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 539-150 chr3 157544604 157544989 + 2 NA intron (NM_001099777, intron 1 of 4) Charlie22a|DNA|hAT-Charlie 1452 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 114-56 chr6 129331679 129331763 + 2 NA intron (NM_000426, intron 29 of 64) L2|LINE|L2 378456 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 432-287 chr8 70455888 70456224 + 2 NA Intergenic Intergenic -15078 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 257-30 chr1 241462898 241463127 + 2 NA Intergenic Intergenic 56773 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 401-191 chr20 58531830 58532129 + 2 NA intron (NR_034147, intron 5 of 6) L1MCc|LINE|L1 -16580 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 130-79 chr6 159982259 159982369 + 2 NA intron (NM_000876, intron 1 of 47) intron (NM_000876, intron 1 of 47) 13215 NM_000876 3482 Hs.487062 NM_000876 ENSG00000197081 IGF2R CD222|CI-M6PR|CIMPR|M6P-R|M6P/IGF2R|MPR 300|MPR1|MPR300|MPRI insulin like growth factor 2 receptor protein-coding 301-258 chr20 55620632 55620866 + 2 NA Intergenic Intergenic -193552 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 241-332 chr6 62218306 62218527 + 2 NA intron (NR_146874, intron 1 of 13) L1MEg|LINE|L1 67809 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 258-242 chr21 28189056 28189277 + 2 NA intron (NR_126012, intron 3 of 5) L1MA1|LINE|L1 39501 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 369-240 chr20 12817540 12817868 + 2 NA Intergenic Intergenic 119259 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 262-456 chr9 95723784 95723971 + 2 NA Intergenic L1PA16|LINE|L1 -151814 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 233-93 chr14 58492319 58492440 + 2 NA intron (NM_001329944, intron 26 of 31) intron (NM_001329944, intron 26 of 31) 52698 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 333-556 chr8 32394195 32394411 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -46443 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 230-254 chr4 10293297 10293491 + 2 NA Intergenic Intergenic 164032 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 324-358 chr3 105075231 105075534 + 2 NA Intergenic L1ME1|LINE|L1 -291331 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 408-46 chr10 75780816 75781177 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -1765 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 529-25 chr11 12657767 12658281 + 2 NA Intergenic L1MEd|LINE|L1 -16397 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 204-6 chr1 76976302 76976453 + 2 NA intron (NM_001320274, intron 2 of 2) L1M5|LINE|L1 -83766 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 268-53 chr10 78026754 78026952 + 2 NA intron (NM_007055, intron 1 of 30) L2b|LINE|L2 2662 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 334-415 chr5 32701221 32701541 + 2 NA intron (NM_001364458, intron 1 of 7) L1MA3|LINE|L1 -9256 NM_001204376 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 148-91 chr7 145920549 145920666 + 2 NA Intergenic L1M2|LINE|L1 -853664 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 333-229 chr2 34391286 34391494 + 2 NA Intergenic Intergenic -286167 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 370-450 chr8 126309643 126309869 + 2 NA Intergenic LTR16A|LTR|ERVL -15739 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 546-79 chr15 95782289 95782721 + 2 NA Intergenic Intergenic 345336 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 223-149 chr2 50506071 50506290 + 2 NA intron (NM_001330093, intron 13 of 22) intron (NM_001330093, intron 13 of 22) -158424 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 375-221 chr2 129375555 129375782 + 2 NA Intergenic MIR|SINE|MIR -101777 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 324-327 chr21 45773209 45773515 + 2 NA intron (NM_001348243, intron 3 of 15) L1MA4A|LINE|L1 25348 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 438-220 chr5 64037672 64037966 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -75527 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 267-230 chr20 48407276 48407486 + 2 NA Intergenic Intergenic 47470 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 260-24 chr1 164965709 164965944 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -191185 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 448-114 chr2 103469007 103469400 + 2 NA Intergenic L1MCb|LINE|L1 -484774 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 341-376 chr4 42108918 42109158 + 2 NA Intergenic L1MB7|LINE|L1 43617 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 628-30 chr11 123890555 123891174 + 2 NA Intergenic L1ME1|LINE|L1 -5194 NM_001363605 338661 Hs.98377 NM_001013743 ENSG00000204300 TMEM225 PMP22CD|PPP1R154|SPATA47 transmembrane protein 225 protein-coding 378-133 chr14 48726006 48726299 + 2 NA Intergenic Intergenic 860228 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 432-249 chr6 81783363 81783631 + 2 NA Intergenic L3|LINE|CR1 30695 NR_126363 101928770 Hs.586239 NR_126363 ENSG00000224995 LINC01526 Lnc-FAM46A-1 long intergenic non-protein coding RNA 1526 ncRNA 249-179 chr2 3890278 3890434 + 2 NA Intergenic L1MA2|LINE|L1 83676 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 254-359 chr6 146572499 146572738 + 2 NA Intergenic L1MA3|LINE|L1 26313 NR_125860 101928661 Hs.711833 NR_125860 ENSG00000237468 LOC101928661 - uncharacterized LOC101928661 ncRNA 237-264 chr4 56133255 56133433 + 2 NA Intergenic Intergenic -36851 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 417-44 chr10 123930799 123931078 + 2 NA Intergenic Intergenic -39131 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 310-299 chr21 14957238 14957477 + 2 NA Intergenic Intergenic -38689 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 213-24 chr1 212939335 212939464 + 2 NA Intergenic L1MC5a|LINE|L1 -11142 NM_001301056 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 361-226 chr2 106005069 106005340 + 2 NA Intergenic L1MB8|LINE|L1 -60484 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 353-176 chr16 51020910 51021146 + 2 NA intron (NR_110913, intron 1 of 2) MIRb|SINE|MIR 3270 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 369-385 chr7 46156650 46156857 + 2 NA Intergenic Intergenic -235481 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 181-152 chr8 10735996 10736098 + 2 NA intron (NR_146188, intron 1 of 2) intron (NR_146188, intron 1 of 2) -5536 NM_031439 83595 Hs.709543 NM_031439 ENSG00000171056 SOX7 - SRY-box transcription factor 7 protein-coding 599-7 chr1 183117532 183118058 + 2 NA intron (NM_002293, intron 10 of 27) intron (NM_002293, intron 10 of 27) 23475 NR_149048 110841583 Hs.604063 NR_149048 ENSG00000224468 LAMC1-AS1 lnc-LAMC2-1:1 LAMC1 antisense RNA 1 ncRNA 512-158 chr22 38151082 38151491 + 2 NA intron (NM_001349869, intron 2 of 16) AluJb|SINE|Alu 30544 NM_001349869 8398 Hs.170479 NM_003560 ENSG00000184381 PLA2G6 CaI-PLA2|GVI|INAD1|IPLA2-VIA|NBIA2|NBIA2A|NBIA2B|PARK14|PLA2|PNPLA9|iPLA2|iPLA2beta phospholipase A2 group VI protein-coding 659-121 chr8 129205111 129205561 + 2 NA Intergenic Intergenic 35904 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 489-277 chrX 126817326 126817720 + 2 NA Intergenic Intergenic -2206 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 271-308 chr4 65188238 65188435 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -183836 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 327-538 chrX 70561088 70561327 + 2 NA intron (NM_001003811, intron 26 of 30) L1ME3|LINE|L1 -105213 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 304-331 chr3 46312472 46312726 + 2 NA Intergenic L1MDa|LINE|L1 -41145 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 357-124 chr15 24607647 24607845 + 2 NA Intergenic ERVL47-int|LTR|ERVL 49589 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 366-164 chr17 53026533 53026813 + 2 NA Intergenic Intergenic 41168 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 350-573 chrX 96267632 96267873 + 2 NA Intergenic Intergenic 70150 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 496-104 chr15 92698171 92698447 + 2 NA Intergenic AluJo|SINE|Alu -42534 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 307-159 chr15 64232622 64232844 + 2 NA intron (NM_001329607, intron 4 of 11) intron (NM_001329607, intron 4 of 11) -69578 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 312-341 chr3 109060426 109060713 + 2 NA intron (NM_014429, intron 11 of 27) intron (NM_014429, intron 11 of 27) -40887 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 373-293 chr4 100646346 100646666 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 28607 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 238-60 chr10 129427377 129427547 + 2 NA Intergenic Intergenic -39779 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 314-566 chr8 75703758 75703973 + 2 NA Intergenic L2c|LINE|L2 163897 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 346-503 chr8 130336296 130336535 + 2 NA intron (NM_001362925, intron 3 of 29) MER5A1|DNA|hAT-Charlie -39882 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 536-170 chr4 33708754 33709255 + 2 NA Intergenic Intergenic 330889 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 248-338 chr6 25383057 25383278 + 2 NA intron (NM_001173977, intron 2 of 36) intron (NM_001173977, intron 2 of 36) 103793 NM_001173977 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 243-347 chr5 13665875 13666104 + 2 NA Intergenic LTR79|LTR|ERVL 278491 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 319-305 chr21 31014909 31015191 + 2 NA Intergenic Intergenic 23426 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 267-296 chr4 96840653 96840869 + 2 NA Intergenic Intergenic -526165 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 421-22 chr1 247163060 247163413 + 2 NA intron (NM_003431, intron 1 of 3) L1PA14|LINE|L1 8781 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 543-13 chr1 115248516 115249029 + 2 NA Intergenic HAL1M8|LINE|L1 -34262 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 557-52 chr14 49138940 49139494 + 2 NA Intergenic Intergenic 447163 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 211-263 chr6 145631990 145632107 + 2 NA intron (NR_153398, intron 2 of 2) intron (NR_153398, intron 2 of 2) 54829 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 346-249 chr2 102218081 102218324 + 2 NA intron (NM_001351447, intron 4 of 9) L1ME3B|LINE|L1 30888 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 384-123 chr15 79627297 79627616 + 2 NA Intergenic LTR40a|LTR|ERVL 194940 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 524-212 chr5 164267702 164268125 + 2 NA Intergenic L1MDa|LINE|L1 199489 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 211-102 chr16 61428351 61428505 + 2 NA Intergenic L2a|LINE|L2 -372662 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 353-140 chr14 59687448 59687672 + 2 NA intron (NM_021136, intron 3 of 8) L1PA15-16|LINE|L1 -40540 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 576-180 chr9 27140718 27141111 + 2 NA intron (NM_001290078, intron 1 of 20) L1M6|LINE|L1 31773 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 252-455 chrX 56948651 56948800 + 2 NA Intergenic HERVK11-int|LTR|ERVK 46816 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 311-556 chrX 64129024 64129278 + 2 NA Intergenic L1MB4|LINE|L1 76557 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 274-178 chr18 68569414 68569654 + 2 NA Intergenic Intergenic 145574 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 382-237 chr20 37145412 37145745 + 2 NA intron (NM_152503, intron 10 of 24) Tigger3b|DNA|TcMar-Tigger -33468 NM_001135771 6185 Hs.370895 NM_002951 ENSG00000118705 RPN2 RIBIIR|RPN-II|RPNII|SWP1 ribophorin II protein-coding 361-68 chr11 22121790 22122099 + 2 NA Intergenic Intergenic -71141 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 352-256 chr2 163731996 163732242 + 2 NA intron (NM_001321825, intron 1 of 1) intron (NM_001321825, intron 1 of 1) 3889 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 352-356 chr4 46233748 46233982 + 2 NA Intergenic Intergenic -109811 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 263-18 chr1 115866677 115866840 + 2 NA Intergenic L1MC4a|LINE|L1 -25632 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 292-231 chr2 140027777 140028051 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 558771 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 181-88 chr22 28423677 28423792 + 2 NA intron (NM_001145418, intron 2 of 22) Tigger12|DNA|TcMar-Tigger -36135 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 377-109 chr13 93415641 93415923 + 2 NA intron (NM_005708, intron 1 of 8) L1M5|LINE|L1 188975 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 229-41 chr10 86217184 86217382 + 2 NA intron (NM_017551, intron 2 of 15) MIR|SINE|MIR 47505 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 254-195 chr2 121400115 121400301 + 2 NA intron (NM_015282, intron 27 of 38) (TTAT)n|Simple_repeat|Simple_repeat -115006 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 262-461 chr9 109615264 109615429 + 2 NA Intergenic L2a|LINE|L2 -25442 NM_001037293 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 275-349 chr7 156451420 156451643 + 2 NA Intergenic L1M5|LINE|L1 -5943 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 347-375 chr5 15866742 15866998 + 2 NA intron (NM_001278317, intron 2 of 3) L1PA8A|LINE|L1 -68312 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 327-411 chr5 114093872 114094092 + 2 NA Intergenic MIRc|SINE|MIR -268088 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 309-358 chr3 108194288 108194509 + 2 NA intron (NM_018010, intron 5 of 10) L1MA4|LINE|L1 28026 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 1119-7 chr4 80906923 80907842 + 2 NA intron (NM_152770, intron 4 of 5) THE1C-int|LTR|ERVL-MaLR -123326 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 214-234 chr4 42708613 42708802 + 2 NA Intergenic L2c|LINE|L2 -51602 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 426-119 chr19 51971895 51972232 + 2 NA intron (NM_021632, intron 2 of 4) MER31A|LTR|ERV1 14777 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 294-503 chr9 93728971 93729176 + 2 NA Intergenic L1ME3D|LINE|L1 -90284 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 280-238 chr21 21913319 21913580 + 2 NA Intergenic Intergenic 166464 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 455-282 chr8 99322849 99323210 + 2 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 213701 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 329-489 chr6 52358262 52358512 + 2 NA Intergenic Intergenic -3764 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 528-159 chr3 90440793 90441313 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1333432 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 311-42 chr10 11311357 11311643 + 2 NA intron (NM_001025076, intron 9 of 13) L1MEd|LINE|L1 33174 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 316-155 chr13 63678286 63678475 + 2 NA intron (NR_047011, intron 3 of 3) Tigger1|DNA|TcMar-Tigger -59055 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 213-258 chr6 169506736 169506905 + 2 NA intron (NR_146875, intron 19 of 20) intron (NR_146875, intron 19 of 20) 195209 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 732-41 chr2 4851248 4851673 + 2 NA Intergenic L1MEc|LINE|L1 -195238 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 480-59 chr13 23818531 23818880 + 2 NA intron (NM_005932, intron 14 of 18) MER57B2|LTR|ERV1 -70163 NM_001014442 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 485-141 chr2 111059058 111059439 + 2 NA intron (NM_001371254, intron 17 of 18) AluJr4|SINE|Alu 56340 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 288-287 chr4 14942826 14943037 + 2 NA intron (NR_038857, intron 7 of 7) intron (NR_038857, intron 7 of 7) -54762 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 152-13 chr10 83768900 83769021 + 2 NA Intergenic Intergenic -91871 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 338-454 chr5 153210706 153210888 + 2 NA Intergenic MER110A|LTR|ERV1 -238448 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 400-164 chr2 60913170 60913566 + 2 NA intron (NM_002908, intron 4 of 10) L1MEg|LINE|L1 31794 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 182-48 chr14 24991522 24991615 + 2 NA intron (NM_001351940, intron 1 of 6) intron (NM_001351940, intron 1 of 6) 57432 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 236-270 chr4 186376186 186376329 + 2 NA intron (NR_033900, intron 1 of 3) L1ME3F|LINE|L1 110068 NM_001354804 2160 Hs.1430 NM_000128 ENSG00000088926 F11 FXI|PTA coagulation factor XI protein-coding 344-111 chr12 66331429 66331656 + 2 NA non-coding (NR_135080, exon 12 of 13) non-coding (NR_135080, exon 12 of 13) 28997 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 220-367 chr8 88660475 88660688 + 2 NA Intergenic Intergenic -333098 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 260-77 chr11 41021919 41022145 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 437604 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 426-77 chr14 95806706 95807129 + 2 NA Intergenic L1M4|LINE|L1 -69475 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 377-438 chrX 88031939 88032269 + 2 NA Intergenic L1ME4b|LINE|L1 514302 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 495-90 chr18 11430728 11431063 + 2 NA Intergenic L1P4|LINE|L1 -23583 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 165-113 chr6 128849102 128849251 + 2 NA Intergenic Intergenic -33962 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 364-487 chrX 127493695 127493981 + 2 NA Intergenic L1ME1|LINE|L1 558565 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 707-2 chr1 29631245 29631735 + 2 NA Intergenic Intergenic -281376 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 407-106 chr17 21150502 21150808 + 2 NA intron (NM_015510, intron 1 of 6) L1M4a1|LINE|L1 -15532 NM_001330159 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 339-198 chr16 64852827 64852996 + 2 NA Intergenic Intergenic 269152 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 549-204 chr8 33273913 33274427 + 2 NA Intergenic Intergenic 198976 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 238-392 chr8 121221534 121221691 + 2 NA Intergenic Intergenic -409566 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 529-100 chr2 52753713 52754161 + 2 NA Intergenic Intergenic -51322 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 356-103 chr12 23480151 23480356 + 2 NA Intergenic L1PA16|LINE|L1 104333 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 301-279 chr3 74753277 74753496 + 2 NA Intergenic Intergenic -232246 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 291-26 chr1 177845895 177846157 + 2 NA Intergenic Intergenic 123896 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 458-276 chr9 133726391 133726749 + 2 NA intron (NM_001134707, intron 6 of 20) intron (NM_001134707, intron 6 of 20) 11782 NM_001134707 1757 Hs.198003 NM_007101 ENSG00000123453 SARDH BPR-2|DMGDHL1|SAR|SARD|SDH sarcosine dehydrogenase protein-coding 293-474 chr9 84494532 84494725 + 2 NA Intergenic Intergenic -125901 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 481-118 chr17 71525127 71525465 + 2 NA Intergenic L1M4a1|LINE|L1 -323117 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 284-233 chr20 22672413 22672604 + 2 NA intron (NR_146527, intron 2 of 2) L1M2|LINE|L1 12836 NR_146528 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 399-175 chr2 221719994 221720253 + 2 NA Intergenic Intergenic -145921 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 291-204 chr2 19823231 19823516 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -45481 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 444-124 chr2 125670460 125670880 + 2 NA Intergenic Intergenic 447315 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 618-141 chr9 96748189 96748757 + 2 NA Intergenic Intergenic 22652 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 878-54 chr9 29097512 29098154 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 114466 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 281-262 chr20 54828869 54829087 + 2 NA Intergenic Intergenic 353385 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 425-211 chr4 106551051 106551442 + 2 NA Intergenic Intergenic 117622 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 317-482 chr8 87307762 87307962 + 2 NA intron (NM_173538, intron 8 of 10) intron (NM_173538, intron 8 of 10) 441447 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 449-79 chr14 68336208 68336559 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 292404 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 189-54 chr14 56536999 56537173 + 2 NA intron (NR_135241, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 22755 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 176-54 chr2 56933935 56934077 + 2 NA Intergenic Intergenic -748236 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 242-382 chr7 126526069 126526302 + 2 NA intron (NM_001371085, intron 9 of 10) intron (NM_001371085, intron 9 of 10) 531999 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 366-209 chr2 106808175 106808412 + 2 NA intron (NM_001322362, intron 5 of 5) intron (NM_001322362, intron 5 of 5) 77735 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 324-87 chr11 45716941 45717233 + 2 NA Intergenic Intergenic -5221 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 236-288 chr5 64041202 64041401 + 2 NA Intergenic Intergenic -79009 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 305-501 chr7 32124727 32124895 + 2 NA intron (NM_001322059, intron 3 of 17) L1PA8A|LINE|L1 -53375 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 139-61 chr4 44843124 44843251 + 2 NA Intergenic Intergenic -116553 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 224-128 chr19 19427857 19428009 + 2 NA intron (NM_001359631, intron 1 of 10) AluSc|SINE|Alu -7130 NR_030370 693225 NR_030370 ENSG00000207821 MIR640 MIRN640|hsa-mir-640 microRNA 640 ncRNA 325-80 chr10 101322168 101322472 + 2 NA Intergenic Intergenic -31713 NM_001256856 8945 Hs.643802 NM_003939 ENSG00000166167 BTRC BETA-TRCP|FBW1A|FBXW1|FBXW1A|FWD1|bTrCP|bTrCP1|betaTrCP beta-transducin repeat containing E3 ubiquitin protein ligase protein-coding 127-3 chr1 34694321 34694407 + 2 NA Intergenic LTR16|LTR|ERVL -24670 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 322-566 chr9 78165651 78165829 + 2 NA Intergenic AluSz|SINE|Alu -70335 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 287-19 chr1 116240075 116240275 + 2 NA Intergenic MER21A|LTR|ERVL 128420 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 366-313 chr4 72951281 72951585 + 2 NA Intergenic L1MEj|LINE|L1 118283 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 380-158 chr17_KI270729v1_random 45618 45859 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 588-82 chr20 6928609 6929036 + 2 NA Intergenic Intergenic 161136 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 245-201 chr2 132377322 132377553 + 2 NA Intergenic LOR1-int|LTR|ERV1 24770 NR_135203 339742 Hs.98178 NR_135203 FAM201B - family with sequence similarity 201 member B ncRNA 208-15 chr1 178276761 178276920 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -64611 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 313-254 chr2 59866913 59867091 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 516034 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 320-34 chr1 192689332 192689575 + 2 NA Intergenic L1MA9|LINE|L1 -26875 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 201-218 chr6 66112751 66112901 + 2 NA Intergenic Intergenic 324947 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 299-235 chr2 174134345 174134578 + 2 NA intron (NM_001011708, intron 4 of 9) L1MA6|LINE|L1 109181 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 231-173 chr2 109471902 109472066 + 2 NA intron (NM_001099289, intron 8 of 9) intron (NM_001099289, intron 8 of 9) 141683 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 155-3 chr1 48377537 48377661 + 2 NA intron (NM_019073, intron 9 of 12) L2c|LINE|L2 94605 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 648-149 chr8 136987797 136988193 + 2 NA Intergenic L1MA9|LINE|L1 425593 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 361-380 chr5 153123425 153123614 + 2 NA Intergenic AluSx1|SINE|Alu -151170 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 150-33 chr13 72804071 72804186 + 2 NA intron (NR_146206, intron 5 of 16) intron (NR_146206, intron 5 of 16) 21995 NR_146206 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 176-2 chr1 34227386 34227541 + 2 NA Intergenic Intergenic 50556 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 522-272 chr9 115934886 115935312 + 2 NA Intergenic Intergenic -9892 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 234-250 chr3 111531892 111532060 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -10221 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 263-217 chr2 140059855 140060113 + 2 NA Intergenic L1ME2|LINE|L1 526701 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 394-347 chrX 37366999 37367349 + 2 NA intron (NM_001173490, intron 1 of 3) intron (NM_001173490, intron 1 of 3) 17810 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 177-68 chr17 77518071 77518200 + 2 NA Intergenic Intergenic -8866 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 415-192 chr4 30697780 30698033 + 2 NA Intergenic Intergenic -22463 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 436-91 chr15 45291963 45292375 + 2 NA Intergenic Intergenic -12947 NR_120335 101928414 NR_120335 ENSG00000259520 LOC101928414 - uncharacterized LOC101928414 ncRNA 620-115 chr5 172253053 172253452 + 2 NA intron (NM_152277, intron 1 of 2) intron (NM_152277, intron 1 of 2) 30512 NM_152277 92181 Hs.131570 NM_152277 ENSG00000168246 UBTD2 DCUBP ubiquitin domain containing 2 protein-coding 229-312 chr5 98698430 98698590 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -70122 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 680-76 chr20 58005356 58005867 + 2 NA TTS (NR_147083) TTS (NR_147083) 1707 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 680-113 chr7 124258354 124258868 + 2 NA Intergenic Intergenic 93485 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 416-300 chr6 149448307 149448646 + 2 NA 3' UTR (NM_207360, exon 6 of 6) 3' UTR (NM_207360, exon 6 of 6) 36538 NM_207360 340152 Hs.632618 NM_207360 ENSG00000178199 ZC3H12D C6orf95|MCPIP4|TFL|dJ281H8.1|p34 zinc finger CCCH-type containing 12D protein-coding 661-88 chr7 110610737 110611349 + 2 NA Intergenic L1MD2|LINE|L1 -479963 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 299-311 chr4 25491167 25491364 + 2 NA Intergenic L1MEg1|LINE|L1 78081 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 301-6 chr1 81505815 81506025 + 2 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) 51782 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 170-50 chr14 89697205 89697325 + 2 NA Intergenic LTR67B|LTR|ERVL -78100 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 301-452 chr8 86824907 86825092 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -41416 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 276-54 chr10 49160570 49160772 + 2 NA intron (NM_001288742, intron 4 of 4) L1MC4|LINE|L1 -26651 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 304-574 chrX 127814275 127814503 + 2 NA Intergenic L1M1|LINE|L1 238014 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 399-174 chr2 219063994 219064251 + 2 NA Intergenic Intergenic -3201 NM_002181 3549 Hs.654504 NM_002181 ENSG00000163501 IHH BDA1|HHG2 Indian hedgehog signaling molecule protein-coding 347-51 chr10 52971910 52972156 + 2 NA Intergenic Intergenic -200333 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 411-148 chr2 81781325 81781729 + 2 NA Intergenic L1M1|LINE|L1 -314581 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 638-46 chr15 73098459 73098882 + 2 NA intron (NM_002499, intron 1 of 28) L1MC5|LINE|L1 46186 NM_001172623 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 338-74 chr10 98583899 98584202 + 2 NA intron (NM_021828, intron 9 of 11) L1MB7|LINE|L1 -137087 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 630-87 chr3 102911738 102912208 + 2 NA Intergenic Intergenic 476958 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 223-189 chr21 19910641 19910814 + 2 NA Intergenic Ricksha|DNA|MULE-MuDR -10972 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 555-116 chr21 20003396 20003879 + 2 NA Intergenic Intergenic -103882 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 417-252 chr6 163895758 163896062 + 2 NA Intergenic MIRb|SINE|MIR -224426 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 420-135 chr2 66653443 66653734 + 2 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 49639 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 216-81 chr13 43720966 43721169 + 2 NA intron (NM_001347969, intron 1 of 16) MER45B|DNA|hAT-Tip100 65905 NM_001347968 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 299-187 chr19 36390975 36391239 + 2 NA 3' UTR (NM_133466, exon 5 of 5) 3' UTR (NM_133466, exon 5 of 5) -11906 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 543-16 chr1 187946430 187946790 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 502982 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 120-26 chr17 59185943 59186039 + 2 NA intron (NM_018304, intron 4 of 9) MER92B|LTR|ERV1 -24019 NM_018149 55181 Hs.7296 NM_018149 ENSG00000167447 SMG8 C17orf71 SMG8 nonsense mediated mRNA decay factor protein-coding 355-54 chr10 61067867 61068049 + 2 NA Intergenic Intergenic 51683 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 288-39 chr10 8491040 8491293 + 2 NA Intergenic Intergenic 103225 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 601-106 chr4 43486790 43487215 + 2 NA intron (NR_146993, intron 1 of 2) (ATTATTT)n|Simple_repeat|Simple_repeat 5541 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 338-482 chr6 152558562 152558826 + 2 NA intron (NM_182961, intron 3 of 145) L1M4c|LINE|L1 78157 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 358-196 chr2 35274454 35274715 + 2 NA Intergenic Intergenic -196821 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 229-49 chr10 115688507 115688684 + 2 NA intron (NM_207303, intron 26 of 28) L1MA4A|LINE|L1 506194 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 271-11 chr1 80684234 80684488 + 2 NA Intergenic Intergenic 43074 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 434-66 chr12 114998534 114998929 + 2 NA Intergenic Intergenic -314556 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 321-305 chr2 161862137 161862431 + 2 NA intron (NM_001354455, intron 6 of 26) intron (NM_001354455, intron 6 of 26) 211931 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 583-168 chr8 139118856 139119325 + 2 NA Intergenic Intergenic -205049 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 223-27 chr10 10810722 10810843 + 2 NA intron (NM_001326327, intron 1 of 14) MER31-int|LTR|ERV1 12057 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 255-345 chr5 166551914 166552121 + 2 NA Intergenic L1ME3C|LINE|L1 374353 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 187-163 chr7 89255923 89256016 + 2 NA intron (NM_181646, intron 2 of 3) L1ME3B|LINE|L1 -460232 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 519-233 chr8 78578184 78578541 + 2 NA intron (NM_006823, intron 2 of 3) intron (NM_006823, intron 2 of 3) -19859 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 161-58 chr2 149809793 149809903 + 2 NA intron (NR_145421, intron 2 of 4) HAL1|LINE|L1 49343 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 307-262 chr2 204934603 204934802 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 389227 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 259-430 chr9 38318202 38318386 + 2 NA Intergenic MIRb|SINE|MIR -74408 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 282-139 chr14 100997451 100997698 + 2 NA intron (NR_146000, intron 49 of 50) intron (NR_146000, intron 49 of 50) 4338 NR_003224 767612 NR_003224 ENSG00000200089 SNORD114-31 14q(II-31) small nucleolar RNA, C/D box 114-31 snoRNA 196-137 chr2 155625131 155625299 + 2 NA Intergenic Intergenic 629716 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 353-282 chr20 37970810 37971066 + 2 NA Intergenic Intergenic 62518 NM_001303457 9675 Hs.655481 NM_014657 ENSG00000101407 TTI1 KIAA0406|smg-10 TELO2 interacting protein 1 protein-coding 408-143 chr18 68138412 68138660 + 2 NA Intergenic (TAGA)n|Simple_repeat|Simple_repeat -323714 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 284-152 chr16 77885936 77886146 + 2 NA intron (NM_020927, intron 7 of 8) L1ME4a|LINE|L1 97477 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 346-135 chr14 62343453 62343744 + 2 NA Intergenic MIRb|SINE|MIR -203625 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 253-227 chr20 53734295 53734506 + 2 NA Intergenic L2a|LINE|L2 126046 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 197-115 chr2 234315911 234316090 + 2 NA Intergenic L1MA6|LINE|L1 138595 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 365-103 chr12 88800032 88800350 + 2 NA Intergenic Intergenic 219501 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 385-259 chr4 270543 270889 + 2 NA TTS (NM_001137608) TTS (NM_001137608) 34758 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 252-373 chr6 76215825 76216035 + 2 NA Intergenic Intergenic -143252 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 509-94 chr17 68812755 68813104 + 2 NA Intergenic Intergenic 142463 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 475-40 chr11 65957610 65958030 + 2 NA intron (NM_152762, intron 5 of 7) intron (NM_152762, intron 5 of 7) -3914 NM_005146 9092 Hs.502883 NM_005146 ENSG00000175467 SART1 Ara1|HAF|HOMS1|SART1259|SNRNP110|Snu66 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP protein-coding 351-418 chr6 56140955 56141248 + 2 NA intron (NM_030820, intron 12 of 29) L1MA6|LINE|L1 -49439 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 347-525 chr8 124917303 124917639 + 2 NA Intergenic Intergenic -24537 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 223-118 chr17 34111754 34111919 + 2 NA intron (NM_001094, intron 1 of 9) L1ME4c|LINE|L1 44970 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 447-125 chr2 70226188 70226548 + 2 NA intron (NM_001351517, intron 7 of 14) intron (NM_001351517, intron 7 of 14) 22260 NM_001351515 7072 Hs.413123 NM_022037 ENSG00000116001 TIA1 TIA-1|WDM TIA1 cytotoxic granule associated RNA binding protein protein-coding 241-116 chr14 73221178 73221380 + 2 NA 3' UTR (NM_007318, exon 12 of 12) 3' UTR (NM_007318, exon 12 of 12) -16227 NM_173462 89932 Hs.509909 NM_173462 ENSG00000100767 PAPLN PPN papilin, proteoglycan like sulfated glycoprotein protein-coding 219-136 chr18 2554772 2554930 + 2 NA exon (NM_001308401, exon 4 of 8) exon (NM_001308401, exon 4 of 8) 16654 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 361-224 chr2 102306516 102306786 + 2 NA Intergenic Intergenic -4851 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 326-248 chr2 81777379 81777633 + 2 NA Intergenic L1MEc|LINE|L1 -310560 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 273-170 chr17 56356093 56356345 + 2 NA intron (NM_001370326, intron 6 of 20) MIR|SINE|MIR 202744 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 558-202 chr7 62731725 62732128 + 2 NA Intergenic ALR/Alpha|Satellite|centr 572130 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 332-165 chr15 62601833 62602129 + 2 NA Intergenic L1MC5|LINE|L1 43200 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 585-147 chr7 20413269 20413657 + 2 NA 3' UTR (NM_002214, exon 14 of 14) 3' UTR (NM_002214, exon 14 of 14) -81701 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 376-169 chr2 15900870 15901154 + 2 NA Intergenic L1MEc|LINE|L1 -19387 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 343-65 chr10 119463775 119463990 + 2 NA Intergenic AluJr|SINE|Alu 72651 NM_002925 6001 Hs.501200 NM_002925 ENSG00000148908 RGS10 - regulator of G protein signaling 10 protein-coding 482-270 chr8 87093105 87093557 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 226916 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 255-5 chr1 79585153 79585315 + 2 NA Intergenic L1MA7|LINE|L1 -578504 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 625-28 chr12 125669746 125670261 + 2 NA Intergenic L1ME2|LINE|L1 47551 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 239-282 chr4 80784244 80784417 + 2 NA intron (NM_001206997, intron 4 of 6) L1MA9|LINE|L1 -246378 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 319-142 chr14 66109338 66109575 + 2 NA Intergenic Intergenic -376915 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 315-150 chr15 62498876 62499076 + 2 NA Intergenic Intergenic 146205 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 276-394 chr6 36155833 36156062 + 2 NA Intergenic L1M4a2|LINE|L1 25434 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 268-58 chr10 109340350 109340549 + 2 NA Intergenic Intergenic 582797 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 406-313 chr9 76808478 76808736 + 2 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) 44171 NR_132313 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 333-59 chr10 56781735 56782030 + 2 NA Intergenic L3|LINE|CR1 -420609 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 333-144 chr14 45127349 45127635 + 2 NA intron (NM_002013, intron 3 of 6) MER33|DNA|hAT-Charlie 6989 NM_002013 2287 Hs.509226 NM_002013 ENSG00000100442 FKBP3 FKBP-25|FKBP-3|FKBP25|PPIase FKBP prolyl isomerase 3 protein-coding 260-406 chr7 38688865 38689004 + 2 NA Intergenic Intergenic -1845 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 204-73 chr13 61010901 61011063 + 2 NA Intergenic Intergenic 188898 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 285-316 chr4 178122081 178122223 + 2 NA Intergenic L1MCa|LINE|L1 -214216 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 433-61 chr12 53568249 53568588 + 2 NA intron (NR_073163, intron 2 of 12) (CT)n|Simple_repeat|Simple_repeat 54434 NR_046221 100652999 Hs.633602 NR_046221 ENSG00000257550 LOC100652999 - uncharacterized LOC100652999 ncRNA 270-264 chr4 46194098 46194366 + 2 NA Intergenic Intergenic -70178 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 215-307 chr8 15975099 15975268 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 211089 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 305-315 chr21 16737283 16737573 + 2 NA Intergenic Intergenic 147191 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 379-326 chr7 112998763 112999002 + 2 NA Intergenic L1PA8A|LINE|L1 -3239 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 380-256 chr3 114016604 114016886 + 2 NA intron (NR_148531, intron 6 of 14) intron (NR_148531, intron 6 of 14) 39781 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 299-44 chr10 31341411 31341603 + 2 NA intron (NM_001323675, intron 1 of 6) L2b|LINE|L2 19847 NM_001323675 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 401 chr1 9996384 9996680 + 2 NA promoter-TSS (NM_052960) promoter-TSS (NM_052960) -696 NR_138250 116362 Hs.422688 NM_052960 ENSG00000162444 RBP7 CRABP4|CRBP4|CRBPIV retinol binding protein 7 protein-coding 343-260 chr2 116440731 116440937 + 2 NA Intergenic Intergenic 1097019 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 528-266 chrX 80747034 80747490 + 2 NA intron (NM_153252, intron 6 of 40) MER20|DNA|hAT-Charlie 62615 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 294-462 chr8 58673050 58673223 + 2 NA Intergenic LTR56|LTR|ERV1 -13283 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 465-128 chr2 71244457 71244780 + 2 NA Intergenic Intergenic -17515 NM_020459 400961 Hs.416735 NM_020459 ENSG00000124374 PAIP2B - poly(A) binding protein interacting protein 2B protein-coding 360-212 chr2 44061892 44062140 + 2 NA Intergenic LTR48|LTR|ERV1 -66027 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 205-142 chr2 114436615 114436762 + 2 NA Intergenic Intergenic -5953 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 300-253 chr21 24965432 24965714 + 2 NA intron (NR_046198, intron 2 of 3) L1MD|LINE|L1 125023 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 312-50 chr10 66562599 66562892 + 2 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -363291 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 384-151 chr19 34543835 34544124 + 2 NA intron (NR_146880, intron 2 of 2) intron (NR_146880, intron 2 of 2) 1407 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 354-472 chr8 118724967 118725185 + 2 NA intron (NR_038210, intron 4 of 4) MLT1I|LTR|ERVL-MaLR -103113 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 220-318 chr6 69449629 69449802 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 346751 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 415-35 chr10 100581842 100582120 + 2 NA Intergenic L1ME1|LINE|L1 46038 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 150-37 chr14 66225852 66225969 + 2 NA Intergenic MER34B|LTR|ERV1 -260461 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 469-271 chr7 99203491 99203957 + 2 NA intron (NM_001145715, intron 1 of 9) AluSz6|SINE|Alu 3765 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 293-224 chr2 237241777 237241978 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 155988 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 305-177 chr16 49957121 49957370 + 2 NA Intergenic Intergenic -67961 NM_001281789 255919 Hs.59134 NM_153261 ENSG00000205423 CNEP1R1 C16orf69|NEP1-R1|NEP1R1|TMEM188|TMP125 CTD nuclear envelope phosphatase 1 regulatory subunit 1 protein-coding 387-45 chr10 107787859 107788136 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 281296 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 191-35 chr12 7340675 7340823 + 2 NA Intergenic Intergenic 36417 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 420-318 chrX 93180829 93181052 + 2 NA Intergenic MER52-int|LTR|ERV1 -356037 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 390-272 chr4 109240057 109240401 + 2 NA intron (NM_198721, intron 3 of 36) Tigger3b|DNA|TcMar-Tigger 62429 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 428-293 chr8 64946352 64946756 + 2 NA Intergenic L1MC4a|LINE|L1 -147817 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 619-82 chr22 34772200 34772635 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 225499 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 478-33 chr10 105486946 105487259 + 2 NA Intergenic Intergenic 333231 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 149-103 chr8 136416358 136416499 + 2 NA Intergenic Intergenic -114370 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 438-171 chr3 95617542 95617896 + 2 NA Intergenic L1PA15|LINE|L1 65474 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 465-182 chr3 121684171 121684484 + 2 NA intron (NM_001256486, intron 14 of 21) HAL1|LINE|L1 -23424 NM_005335 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 581-153 chr6 162695520 162696084 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -31330 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 300-139 chr16 26551180 26551386 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -515644 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 163-94 chr4 41689084 41689192 + 2 NA intron (NM_001330983, intron 19 of 21) intron (NM_001330983, intron 19 of 21) 59832 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 260-470 chrX 79780078 79780295 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -234567 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 357-214 chr2 128295538 128295769 + 2 NA intron (NM_004807, intron 1 of 1) L1MB3|LINE|L1 23215 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 199-230 chr8 15405147 15405325 + 2 NA Intergenic Intergenic -134851 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 505-145 chr2 67535242 67535630 + 2 NA Intergenic Intergenic 138103 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 323-5 chr1 42206719 42206924 + 2 NA intron (NM_001198850, intron 5 of 12) AluSz|SINE|Alu -42076 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 359-137 chr14 33390330 33390687 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -318429 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 543-181 chr4 55569562 55569975 + 2 NA exon (NM_152401, exon 4 of 6) exon (NM_152401, exon 4 of 6) 22477 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 384-69 chr12 13651553 13651880 + 2 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -274971 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 485-320 chrX 54651917 54652263 + 2 NA Intergenic L1M1|LINE|L1 121871 NM_019067 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 327-84 chr11 50809209 50809384 + 2 NA Intergenic ALR/Alpha|Satellite|centr 400149 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 336-390 chr4 27298986 27299171 + 2 NA Intergenic Intergenic 81599 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 210-171 chr3 42433893 42434045 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -23359 NM_144634 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 229-246 chr3 27867673 27867891 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -33646 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 880-18 chr19 36861011 36861551 + 2 NA intron (NM_001242474, intron 3 of 3) L1MC4|LINE|L1 9630 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 428-260 chr6 130938597 130938945 + 2 NA intron (NR_146620, intron 1 of 12) MamTip2|DNA|hAT-Tip100 31712 NM_001350310 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 460-154 chr2 168611239 168611529 + 2 NA intron (NM_001256126, intron 3 of 10) MER102b|DNA|hAT-Charlie 28441 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 457-28 chr10 59546713 59547075 + 2 NA Intergenic Intergenic 162997 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 540-195 chr7 40731139 40731572 + 2 NA intron (NM_024728, intron 13 of 14) MIRc|SINE|MIR 248584 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 242-188 chr2 81308888 81309036 + 2 NA Intergenic LTR108e_Mam|LTR|ERVL 157984 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 262-354 chr5 162763102 162763233 + 2 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -674404 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 170-27 chr11 66125646 66125741 + 2 NA intron (NM_018026, intron 1 of 23) intron (NM_018026, intron 1 of 23) 55421 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 358-123 chr14 72041596 72041947 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 108244 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 344-272 chr20 11396976 11397305 + 2 NA Intergenic MLT2B1|LTR|ERVL -123757 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 205-63 chr12 5533192 5533388 + 2 NA Intergenic Intergenic 39158 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 242-443 chrX 66358909 66359114 + 2 NA Intergenic L1PA13|LINE|L1 191261 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 499-56 chr12 45176469 45176858 + 2 NA intron (NR_037144, intron 1 of 2) intron (NR_037144, intron 1 of 2) 39343 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 401-240 chr4 154276287 154276561 + 2 NA intron (NM_001358235, intron 13 of 19) intron (NM_001358235, intron 13 of 19) 215375 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 228-67 chr12 41897983 41898173 + 2 NA Intergenic L1ME2|LINE|L1 133889 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 381-332 chr6 71248223 71248530 + 2 NA Intergenic Intergenic -40435 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 379-24 chr1 181663821 181664139 + 2 NA intron (NM_001205293, intron 7 of 47) intron (NM_001205293, intron 7 of 47) 180463 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 391-157 chr2 16337006 16337348 + 2 NA Intergenic Intergenic 286750 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 286-324 chr4 134613609 134613864 + 2 NA Intergenic Intergenic 189868 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 181-124 chr5 66483123 66483255 + 2 NA Intergenic L1MB7|LINE|L1 28415 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 180-46 chr14 55906907 55907048 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -110303 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 251-393 chr8 88248376 88248553 + 2 NA intron (NM_005941, intron 1 of 9) L1MEh|LINE|L1 79019 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 306-185 chr16 72673196 72673433 + 2 NA Intergenic L1MB4|LINE|L1 -8344 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 370-340 chr4 52266506 52266781 + 2 NA Intergenic Intergenic 215339 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 359-132 chr13 83438374 83438614 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 443899 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 325-249 chr19 43443573 43443776 + 2 NA Intergenic MER4A1|LTR|ERV1 21934 NM_014400 27076 Hs.631594 NM_014400 ENSG00000124466 LYPD3 C4.4A LY6/PLAUR domain containing 3 protein-coding 426-171 chr22 33705245 33705518 + 2 NA promoter-TSS (NR_145833) promoter-TSS (NR_145833) -461 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 127-39 chr18 36957777 36957866 + 2 NA intron (NM_001353918, intron 5 of 9) L1MB7|LINE|L1 -34007 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 352-510 chr7 124358908 124359172 + 2 NA Intergenic Intergenic -6944 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 386-165 chr2 49999842 50000176 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -25806 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 576-96 chr2 233692389 233692940 + 2 NA promoter-TSS (NM_001072) promoter-TSS (NM_001072) -226 NM_001072 54578 Hs.554822 NM_001072 ENSG00000167165 UGT1A6 GNT1|HLUGP|HLUGP1|UDPGT|UDPGT 1-6|UGT-1A|UGT-1C|UGT-1E|UGT1|UGT1-01|UGT1-03|UGT1-05|UGT1.1|UGT1.3|UGT1.5|UGT1A|UGT1A1|UGT1A3|UGT1A5|UGT1A6S|UGT1C|UGT1E|UGT1F|hUG-BR1 UDP glucuronosyltransferase family 1 member A6 protein-coding 286-351 chr5 33348052 33348298 + 2 NA Intergenic L1PA6|LINE|L1 -92521 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 391-46 chr10 95481758 95482068 + 2 NA intron (NM_001290295, intron 2 of 24) intron (NM_001290295, intron 2 of 24) -40733 NM_001290298 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 472-317 chr8 91540250 91540540 + 2 NA Intergenic L1M2|LINE|L1 291076 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 416-156 chr19 44188786 44189158 + 2 NA Intergenic MER65A|LTR|ERV1 -23556 NM_001289171 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 360-501 chrX 76001137 76001392 + 2 NA Intergenic L1PA13|LINE|L1 -171665 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 275-393 chrX 45460564 45460786 + 2 NA Intergenic L1PA17|LINE|L1 -44713 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 584-122 chr4 159633664 159634071 + 2 NA Intergenic Intergenic 143917 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 689-13 chr10 60402555 60403015 + 2 NA intron (NM_001204403, intron 2 of 43) MLT1H|LTR|ERVL-MaLR -12910 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 355-15 chr1 96009367 96009569 + 2 NA intron (NR_125991, intron 4 of 4) MIRc|SINE|MIR 17400 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 617-95 chr4 63091225 63091629 + 2 NA Intergenic Intergenic -929662 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 656-114 chr6 159253775 159254208 + 2 NA intron (NM_032532, intron 17 of 22) intron (NM_032532, intron 17 of 22) -83984 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 440-112 chr2 30546492 30546797 + 2 NA intron (NM_182551, intron 4 of 6) intron (NM_182551, intron 4 of 6) 99398 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 291-339 chr5 26851242 26851504 + 2 NA Intergenic Intergenic 187213 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 596-96 chr2 110928780 110929211 + 2 NA intron (NM_001371254, intron 11 of 18) THE1B|LTR|ERVL-MaLR 186593 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 609-10 chr10 62643115 62643545 + 2 NA intron (NM_199451, intron 5 of 7) MLT1D|LTR|ERVL-MaLR 122882 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 303-344 chr5 6439920 6440218 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -8790 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 232-226 chr22 24831217 24831421 + 2 NA intron (NM_001098498, intron 2 of 23) LTR16A|LTR|ERVL 25098 NM_133454 129049 Hs.474397 NM_133454 ENSG00000167037 SGSM1 RUTBC2 small G protein signaling modulator 1 protein-coding 305-49 chr1 239230114 239230410 + 2 NA Intergenic HAL1|LINE|L1 -156306 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 360-106 chr13 74746005 74746308 + 2 NA Intergenic Intergenic 193313 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 376-326 chr5 89056270 89056480 + 2 NA intron (NR_136221, intron 3 of 6) X7A_LINE|LINE|CR1 -152270 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 330-44 chr1 239165353 239165591 + 2 NA Intergenic L2c|LINE|L2 -221096 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 240-320 chr4 79790695 79790874 + 2 NA Intergenic L1MA5|LINE|L1 -36687 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 211-201 chr3 178069624 178069780 + 2 NA Intergenic L2a|LINE|L2 252837 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 355-456 chr7 25699800 25700041 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) -29189 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 187-98 chr21 26528118 26528268 + 2 NA intron (NR_135515, intron 2 of 3) intron (NR_135515, intron 2 of 3) 45093 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 337-555 chr8 125955713 125955952 + 2 NA Intergenic L2|LINE|L2 -4635 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 350-382 chr5 11070174 11070476 + 2 NA intron (NM_001288715, intron 15 of 20) L1MEg|LINE|L1 -309091 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 644-9 chr10 95794591 95794985 + 2 NA intron (NR_038444, intron 4 of 5) L2b|LINE|L2 38625 NM_001164182 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 439-125 chr2 32958410 32958672 + 2 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 11588 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 286-77 chr11 113210891 113211113 + 2 NA intron (NM_181351, intron 7 of 18) intron (NM_181351, intron 7 of 18) 62899 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 339-605 chr9 27450239 27450527 + 2 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -73931 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 277-423 chr8 116375919 116376177 + 2 NA Intergenic L1PA15-16|LINE|L1 -50989 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 327-262 chr2 76412530 76412768 + 2 NA Intergenic L1MD|LINE|L1 -573316 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 315-426 chr6 131427358 131427528 + 2 NA Intergenic Intergenic -145783 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 172-140 chr8 126339519 126339643 + 2 NA Intergenic L1PB2|LINE|L1 14086 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 367-101 chr12 125203041 125203263 + 2 NA intron (NM_001366854, intron 1 of 8) L2a|LINE|L2 16766 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 158-108 chr7 108808560 108808664 + 2 NA Intergenic Intergenic 75975 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 344-103 chr12 28759595 28759859 + 2 NA Intergenic L1ME3A|LINE|L1 -389551 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 377-368 chr7 39278513 39278843 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 50456 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 323-111 chr12 37964902 37965091 + 2 NA Intergenic ALR/Alpha|Satellite|centr -351778 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 350-478 chr7 43447358 43447688 + 2 NA intron (NM_001287059, intron 10 of 27) intron (NM_001287059, intron 10 of 27) 75019 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 211-274 chr7 33808533 33808659 + 2 NA Intergenic Intergenic -96319 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 318-191 chr16 5457666 5457870 + 2 NA Intergenic L2b|LINE|L2 158482 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 318-290 chr2 151832365 151832578 + 2 NA TTS (NM_001330113) TTS (NM_001330113) -4050 NM_012097 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 679-102 chr7 62690619 62691103 + 2 NA Intergenic ALR/Alpha|Satellite|centr 613195 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 159-31 chr14 83040167 83040285 + 2 NA Intergenic (TATTA)n|Simple_repeat|Simple_repeat 397594 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 556-187 chr6 39251369 39251790 + 2 NA Intergenic Intergenic -22104 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 199-137 chr20 6197418 6197592 + 2 NA Intergenic L1MA9|LINE|L1 -73961 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 407-245 chr5 35393513 35393913 + 2 NA Intergenic Intergenic -163226 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 375-235 chr20 10993186 10993522 + 2 NA Intergenic Intergenic -33190 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 177-51 chr14 74416021 74416154 + 2 NA intron (NM_001105579, intron 1 of 3) L1ME1|LINE|L1 10123 NM_001105579 646658 Hs.12400 NM_001105579 ENSG00000183379 SYNDIG1L CAPUCIN|DSPC1|IFITMD4|TMEM90A synapse differentiation inducing 1 like protein-coding 307-336 chr4 38297523 38297726 + 2 NA Intergenic MER21C|LTR|ERVL -69290 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 598-150 chr9 6070389 6070847 + 2 NA Intergenic MER20|DNA|hAT-Charlie -54994 NM_001243203 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 234-373 chr7 96372965 96373142 + 2 NA Intergenic AluJr|SINE|Alu -50906 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 500-245 chr6 68979045 68979456 + 2 NA intron (NM_001704, intron 10 of 31) L2|LINE|L2 343968 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 576-102 chr21 43293923 43294409 + 2 NA Intergenic L1ME3F|LINE|L1 37873 NR_103713 100126693 Hs.473952 NR_103713 LINC00322 C21orf136|NCRNA00322 long intergenic non-protein coding RNA 322 ncRNA 374-250 chr3 88148034 88148327 + 2 NA intron (NM_001195308, intron 1 of 3) L2a|LINE|L2 1686 NM_001195308 8545 Hs.444818 NM_003663 ENSG00000163320 CGGBP1 CGGBP|p20-CGGBP CGG triplet repeat binding protein 1 protein-coding 281-331 chr4 140570648 140570845 + 2 NA Intergenic Intergenic -1785 NM_021833 7350 Hs.249211 NM_021833 ENSG00000109424 UCP1 SLC25A7|UCP uncoupling protein 1 protein-coding 375-367 chr7 15181124 15181457 + 2 NA Intergenic Intergenic -206432 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 430-63 chr12 42747858 42748183 + 2 NA Intergenic LTR47A|LTR|ERVL 55804 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 388-357 chr8 139072267 139072603 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -158394 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 522-36 chr11 5740900 5741278 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 4641 NM_001005180 387748 Hs.689609 NM_001005180 ENSG00000181023 OR56B1 OR11-65|OR56B1P olfactory receptor family 56 subfamily B member 1 protein-coding 270-140 chr16 49524991 49525228 + 2 NA intron (NM_001271620, intron 6 of 7) intron (NM_001271620, intron 6 of 7) -6524 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 365-407 chr8 120974583 120974887 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -162689 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 381-340 chr6 113666880 113667084 + 2 NA Intergenic Intergenic -16907 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 391-74 chr12 42679034 42679398 + 2 NA intron (NR_135026, intron 4 of 4) intron (NR_135026, intron 4 of 4) -13000 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 579-114 chr4 68205878 68206388 + 2 NA intron (NR_104048, intron 2 of 9) intron (NR_104048, intron 2 of 9) 11947 NR_104048 401136 Hs.652046 NM_001129907 ENSG00000250026 TMPRSS11BNL - TMPRSS11B N-terminal like, pseudogene pseudo 284-141 chr15 92325330 92325498 + 2 NA Intergenic Intergenic -68467 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 342-487 chr7 63120879 63121153 + 2 NA Intergenic L1M4c|LINE|L1 183040 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 604-119 chr4 52111453 52111968 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 60406 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 397-271 chr5 170850848 170851169 + 2 NA Intergenic Intergenic -11010 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 444-155 chr3 107800126 107800468 + 2 NA intron (NM_001276286, intron 15 of 16) intron (NM_001276286, intron 15 of 16) 77771 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 235-321 chr7 25614089 25614257 + 2 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 48967 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 474-280 chr8 51973403 51973782 + 2 NA Intergenic L1M4|LINE|L1 -74406 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 550-240 chr8 136809895 136810365 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 279332 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 561-12 chr1 180370956 180371405 + 2 NA intron (NM_032360, intron 6 of 7) intron (NM_032360, intron 6 of 7) 67210 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 349-31 chr1 178918806 178919105 + 2 NA 3' UTR (NM_001286247, exon 19 of 19) 3' UTR (NM_001286247, exon 19 of 19) -47878 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 236-391 chrX 14407040 14407207 + 2 NA Intergenic Intergenic -122175 NM_001171942 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 342-46 chr1 218637522 218637712 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 127522 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 255-238 chr21 19100262 19100459 + 2 NA Intergenic Intergenic -340548 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 500-49 chr11 41370109 41370496 + 2 NA intron (NM_001258419, intron 1 of 6) AluJb|SINE|Alu 89334 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 305-574 chrX 126158924 126159096 + 2 NA Intergenic Intergenic 7279 NM_001013628 340578 Hs.181867 NM_001013628 ENSG00000198354 DCAF12L2 WDR40C DDB1 and CUL4 associated factor 12 like 2 protein-coding 339-590 chr8 124708164 124708372 + 2 NA intron (NM_001282971, intron 1 of 14) MIRb|SINE|MIR 20205 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 243-258 chr20 52457010 52457158 + 2 NA Intergenic MLT2B3|LTR|ERVL -163754 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 325-3 chr1 10954592 10954866 + 2 NA intron (NM_001366227, intron 7 of 10) AluJb|SINE|Alu 11958 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 590-23 chr11 42899572 42899979 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 369594 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 298-208 chr2 48034451 48034730 + 2 NA Intergenic Intergenic -128797 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 202-57 chr13 67968420 67968606 + 2 NA Intergenic Intergenic 596126 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 412-232 chr4 48101515 48101855 + 2 NA intron (NM_003328, intron 6 of 14) intron (NM_003328, intron 6 of 14) 32565 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 256-414 chr8 75739450 75739675 + 2 NA Intergenic Intergenic 199594 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 305-366 chr3 190412563 190412746 + 2 NA TTS (NM_006580) TTS (NM_006580) 24782 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 345-120 chr12 94812068 94812315 + 2 NA Intergenic L1M4|LINE|L1 -22207 NR_030171 574449 NR_030171 ENSG00000283998 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 268-298 chr4 165772928 165773138 + 2 NA Intergenic L1ME3D|LINE|L1 -29962 NR_121677 101928131 Hs.406479 NR_121677 LOC101928131 - uncharacterized LOC101928131 ncRNA 469-53 chr11 64683697 64684108 + 2 NA intron (NM_015080, intron 6 of 22) intron (NM_015080, intron 6 of 22) 39286 NM_015080 9379 Hs.372938 NM_015080 ENSG00000110076 NRXN2 - neurexin 2 protein-coding 217-265 chr4 88629803 88629952 + 2 NA intron (NM_001318505, intron 3 of 8) intron (NM_001318505, intron 3 of 8) 37397 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 268-295 chr4 136154622 136154825 + 2 NA Intergenic Intergenic -241043 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 264-358 chr6 62193499 62193721 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 92615 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 354-449 chr8 20410703 20410970 + 2 NA Intergenic AluJr4|SINE|Alu -106873 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 222-317 chr6 38281498 38281661 + 2 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -200017 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 286-245 chr20 15123261 15123456 + 2 NA intron (NM_001351663, intron 5 of 17) MLT1K|LTR|ERVL-MaLR -73482 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 322-86 chr11 42351813 42352070 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -98251 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 653-61 chr19 31853620 31854058 + 2 NA Intergenic Intergenic -172023 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 242-312 chr5 93260447 93260677 + 2 NA Intergenic Intergenic 310781 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 604-138 chr6 22705744 22706256 + 2 NA intron (NR_134614, intron 1 of 2) intron (NR_134614, intron 1 of 2) 11924 NR_134613 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 239-310 chr5 33018757 33018918 + 2 NA Intergenic Intergenic 71394 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 720-28 chr14 66733489 66733982 + 2 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 226328 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 313-136 chr14 28464930 28465150 + 2 NA Intergenic L1PB4|LINE|L1 300279 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 330-328 chr21 26296417 26296603 + 2 NA Intergenic L1PA16|LINE|L1 -97125 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 296-116 chr12 125627071 125627281 + 2 NA intron (NM_001286219, intron 1 of 4) L1MCa|LINE|L1 4724 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 341-364 chr4 10903895 10904171 + 2 NA Intergenic Intergenic -219265 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 361-209 chr2 39632597 39632949 + 2 NA Intergenic Intergenic -32725 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 510-30 chr10 57853779 57854078 + 2 NA Intergenic Intergenic 413966 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 164-121 chrX 73935891 73936048 + 2 NA Intergenic Intergenic -8355 NR_024582 554203 Hs.648316 NR_024582 ENSG00000225470 JPX DCBALD06|ENOX|LINC00183|NCRNA00183 JPX transcript, XIST activator ncRNA 708-83 chr9 82300749 82301258 + 2 NA Intergenic L1M2a|LINE|L1 312231 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 170-66 chr2 16587280 16587417 + 2 NA intron (NM_030797, intron 3 of 11) intron (NM_030797, intron 3 of 11) 78486 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 452-8 chr1 106338989 106339300 + 2 NA Intergenic Intergenic -310891 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 249-107 chr13 102932167 102932390 + 2 NA Intergenic Intergenic 52179 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 351-463 chr8 20089632 20089970 + 2 NA Intergenic AluSx1|SINE|Alu 93335 NM_001142324 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 344-293 chr21 31741545 31741801 + 2 NA Intergenic L1MEc|LINE|L1 -9555 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 458-5 chr1 168454473 168454748 + 2 NA Intergenic Intergenic -31954 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 456-219 chr4 32437386 32437746 + 2 NA Intergenic Intergenic 86528 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 260-455 chr9 70776722 70776873 + 2 NA intron (NM_001366143, intron 7 of 25) intron (NM_001366143, intron 7 of 25) 33287 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 334-550 chr8 130218006 130218199 + 2 NA intron (NM_001362925, intron 4 of 29) intron (NM_001362925, intron 4 of 29) 78431 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 546-195 chr5 108080659 108081043 + 2 NA intron (NM_001163315, intron 6 of 8) MER4D1|LTR|ERV1 301247 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 267-376 chr6 103977480 103977672 + 2 NA Intergenic Intergenic 881970 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 344-453 chr7 34567567 34567831 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -90519 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 210-185 chr4 332838 332967 + 2 NA Intergenic AluSz6|SINE|Alu -4912 NM_001348279 7700 Hs.654355 NM_003441 ENSG00000131127 ZNF141 D4S90|pHZ-44 zinc finger protein 141 protein-coding 561-214 chr9 29730683 29731034 + 2 NA Intergenic LTR38-int|LTR|ERV1 -517257 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 204-208 chr3 173901933 173902082 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 18789 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 209-209 chr3 150976427 150976610 + 2 NA intron (NR_024066, intron 1 of 5) intron (NR_024066, intron 1 of 5) -3519 NM_001195794 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 241-107 chr14 49210392 49210575 + 2 NA Intergenic Intergenic 375897 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 191-70 chr16 77801208 77801341 + 2 NA intron (NM_020927, intron 1 of 8) intron (NM_020927, intron 1 of 8) 12710 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 114-54 chr6 40775997 40776083 + 2 NA Intergenic MIRb|SINE|MIR -188676 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 521 chr1 13920673 13921077 + 2 NA Intergenic LTR19A|LTR|ERV1 171460 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 277-257 chr3 80465015 80465281 + 2 NA Intergenic L1P4|LINE|L1 -299749 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 272-102 chr13 56750481 56750686 + 2 NA Intergenic Intergenic -390335 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 326-48 chr1 223039560 223039756 + 2 NA Intergenic Intergenic 103590 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 403-203 chr3 147153653 147153959 + 2 NA Intergenic L1M4|LINE|L1 231883 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 399-2 chr1 49497968 49498210 + 2 NA intron (NR_136623, intron 2 of 12) L1MA8|LINE|L1 -26004 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 340-227 chr19 49289554 49289732 + 2 NA TTS (NM_014037) TTS (NM_014037) 19225 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 216-115 chr15 79981852 79982010 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -10735 NM_001114735 597 Hs.227817 NM_004049 ENSG00000140379 BCL2A1 ACC-1|ACC-2|ACC1|ACC2|BCL2L5|BFL1|GRS|HBPA1 BCL2 related protein A1 protein-coding 134-21 chr12 12352444 12352536 + 2 NA Intergenic AluSz|SINE|Alu -2248 NM_018050 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 338-437 chr5 71746423 71746609 + 2 NA Intergenic Intergenic 27241 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 229-75 chr11 106133958 106134153 + 2 NA Intergenic Intergenic -1939 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 192-100 chr2 83912604 83912721 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -378020 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 382-375 chr7 28256948 28257252 + 2 NA Intergenic L1MA7|LINE|L1 -42221 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 121-58 chr7 34489460 34489541 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -168718 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 135-58 chr5 123126128 123126199 + 2 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -35847 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 274-93 chr12 43771082 43771278 + 2 NA intron (NM_001351341, intron 3 of 12) MSTD|LTR|ERVL-MaLR 12236 NM_001351343 51135 Hs.138499 NM_016123 ENSG00000198001 IRAK4 IPD1|IRAK-4|NY-REN-64|REN64 interleukin 1 receptor associated kinase 4 protein-coding 504-172 chr3 89104047 89104373 + 2 NA Intergenic Intergenic -3411 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 485-260 chr7 24661130 24661556 + 2 NA intron (NM_016447, intron 6 of 12) intron (NM_016447, intron 6 of 12) 87891 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 685-10 chr10 77337095 77337728 + 2 NA intron (NM_001322838, intron 1 of 29) AluSz|SINE|Alu 13350 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 205-108 chr16 11740310 11740506 + 2 NA intron (NR_136673, intron 1 of 9) intron (NR_136673, intron 1 of 9) 2449 NR_136671 51061 Hs.313847 NM_015914 ENSG00000153066 TXNDC11 EFP1 thioredoxin domain containing 11 protein-coding 312-63 chr10 117611819 117612005 + 2 NA Intergenic L1MB3|LINE|L1 -66844 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 504-98 chr17 34096221 34096658 + 2 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 60367 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 402-63 chr12 43648608 43648844 + 2 NA Intergenic Intergenic -96523 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 273-417 chr7 21060097 21060266 + 2 NA Intergenic Intergenic 224750 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 314-14 chr1 73421070 73421338 + 2 NA Intergenic Intergenic 115034 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 145-69 chr5 148514741 148514820 + 2 NA intron (NM_001040172, intron 4 of 5) L1ME3|LINE|L1 122281 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 241-395 chr8 79816384 79816544 + 2 NA intron (NR_110954, intron 3 of 5) MER47B|DNA|TcMar-Tigger 48322 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 315-495 chr8 132404401 132404664 + 2 NA intron (NM_004519, intron 1 of 14) MLT2D|LTR|ERVL 42730 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 220-161 chr2 59397640 59397803 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 180013 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 556-151 chr3 174391870 174392247 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -467276 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 358-114 chr14 26099553 26099777 + 2 NA Intergenic Intergenic 453765 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 379-90 chr14 53597333 53597630 + 2 NA Intergenic MER99|DNA|hAT? 351003 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 704-78 chr7 52553212 52553795 + 2 NA Intergenic Intergenic -482130 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 409-159 chr2 211533165 211533393 + 2 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 893081 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 650-11 chr11 15489638 15490079 + 2 NA Intergenic Intergenic -154027 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 374-295 chr5 10119553 10119863 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 130180 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 275-310 chr6 54563308 54563514 + 2 NA Intergenic LTR47A2|LTR|ERVL 254970 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 440-141 chr20 60678890 60679327 + 2 NA Intergenic Intergenic 114546 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 657-69 chr4 30485919 30486475 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -234172 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 299-210 chr2 84235877 84236147 + 2 NA Intergenic Intergenic -54670 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 313-179 chr16 7068904 7069076 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -263855 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 447-128 chr2 103551291 103551568 + 2 NA Intergenic MER73|LTR|ERVL -567000 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 297-388 chr5 163070312 163070517 + 2 NA Intergenic L1MA1|LINE|L1 -367157 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 128-78 chr8 102014566 102014658 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) 30180 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 194-141 chr4 33766578 33766683 + 2 NA Intergenic Intergenic 273263 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 262-407 chr7 98848811 98848997 + 2 NA intron (NM_152913, intron 6 of 7) MLT1F1|LTR|ERVL-MaLR 21110 NM_152913 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 499-287 chr9 119838753 119839219 + 2 NA Intergenic AluSx|SINE|Alu -96074 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 474-307 chr9 82448106 82448405 + 2 NA Intergenic Intergenic 459483 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 390-317 chr6 41612287 41612611 + 2 NA Intergenic HAL1|LINE|L1 13726 NR_039784 100616178 NR_039784 ENSG00000266494 MIR4641 - microRNA 4641 ncRNA 330-483 chr7 21565893 21566068 + 2 NA intron (NM_001277115, intron 6 of 81) intron (NM_001277115, intron 6 of 81) 22941 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 383-74 chr12 5128889 5129153 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 85142 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 800-41 chr3 99498401 99498884 + 2 NA Intergenic Intergenic -139952 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 339-389 chr3 181013853 181014177 + 2 NA Intergenic L1MEg|LINE|L1 -24241 NR_046073 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 552-173 chr5 67701930 67702366 + 2 NA Intergenic L1MC3|LINE|L1 -55359 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 286-285 chr3 84648104 84648335 + 2 NA intron (NR_033860, intron 19 of 20) THE1D|LTR|ERVL-MaLR 221356 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 405-34 chr10 80405310 80405588 + 2 NA Intergenic Intergenic -2380 NM_001243779 84293 Hs.500333 NM_032333 ENSG00000122378 PRXL2A Adrx|C10orf58|FAM213A|PAMM peroxiredoxin like 2A protein-coding 343-204 chr18 48174130 48174436 + 2 NA intron (NM_001371285, intron 2 of 5) L1MC4a|LINE|L1 19643 NM_001371288 741-24 chr18 43508858 43509487 + 2 NA Intergenic HERVIP10B3-int|LTR|ERV1 -231682 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 316-532 chr8 10182843 10183078 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 87309 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 323-29 chr1 184984029 184984277 + 2 NA Intergenic Intergenic -9645 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 453-37 chr11 38623495 38623832 + 2 NA intron (NR_120554, intron 3 of 4) intron (NR_120554, intron 3 of 4) 22693 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 218-46 chr11 28932994 28933188 + 2 NA Intergenic Intergenic -455543 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 295-359 chr4 148118877 148119064 + 2 NA intron (NM_000901, intron 7 of 8) (TC)n|Simple_repeat|Simple_repeat 323444 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 221-204 chr3 145476287 145476463 + 2 NA Intergenic Intergenic 592810 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 225-215 chr3 97082704 97082888 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 268202 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 395-70 chr12 45442460 45442762 + 2 NA Intergenic L1MA2|LINE|L1 149921 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 258-202 chr2 127231025 127231209 + 2 NA Intergenic Intergenic -10818 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 334-266 chr2 69671900 69672156 + 2 NA intron (NM_001320698, intron 2 of 14) L1ME3Cz|LINE|L1 28220 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 288-95 chr13 38929955 38930124 + 2 NA Intergenic Intergenic 60792 NM_145286 161003 Hs.327794 NM_145286 ENSG00000133115 STOML3 Epb7.2l|SRO stomatin like 3 protein-coding 522-48 chr11 77297330 77297818 + 2 NA intron (NM_182833, intron 1 of 16) MIR|SINE|MIR 4092 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 446-66 chr11 84109512 84109862 + 2 NA intron (NM_001142699, intron 9 of 27) intron (NM_001142699, intron 9 of 27) 163593 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 307-199 chr18 11232012 11232170 + 2 NA Intergenic Intergenic -83329 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 360-440 chr7 106844283 106844502 + 2 NA Intergenic LTR8|LTR|ERV1 -20890 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 501-205 chr5 28318245 28318650 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -30782 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 340-434 chr5 25345827 25346021 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 154971 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 372-469 chr8 13294482 13294723 + 2 NA intron (NM_001348082, intron 5 of 16) intron (NM_001348082, intron 5 of 16) -17818 NM_001348083 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 258-240 chr21 26555339 26555562 + 2 NA intron (NR_135515, intron 3 of 3) intron (NR_135515, intron 3 of 3) 17836 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 307-520 chr9 87734511 87734715 + 2 NA Intergenic L1MC1|LINE|L1 8494 NM_001257973 1514 Hs.731507 NM_001912 ENSG00000135047 CTSL CATL|CTSL1|MEP cathepsin L protein-coding 291-72 chr11 31797914 31798150 + 2 NA intron (NM_001368929, intron 4 of 8) intron (NM_001368929, intron 4 of 8) 2629 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 325-455 chr5 108652921 108653190 + 2 NA Intergenic Intergenic 75206 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 334-358 chr3 107914094 107914355 + 2 NA intron (NR_015394, intron 1 of 2) Zaphod|DNA|hAT-Tip100 31019 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 383-240 chr3 5803463 5803776 + 2 NA Intergenic L1PA4|LINE|L1 -553364 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 350-462 chr6 168308118 168308381 + 2 NA exon (NM_214462, exon 4 of 4) exon (NM_214462, exon 4 of 4) 11528 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 221-174 chr22 40988107 40988298 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 36824 NM_014248 9978 Hs.474949 NM_014248 ENSG00000100387 RBX1 BA554C12.1|RNF75|ROC1 ring-box 1 protein-coding 397-90 chr14 55979993 55980252 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -138289 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 244-348 chr7 87627549 87627723 + 2 NA promoter-TSS (NM_001134405) promoter-TSS (NM_001134405) -762 NM_001134405 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 332-366 chr4 31264088 31264337 + 2 NA Intergenic Intergenic 93068 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 367-45 chr10 41892605 41892904 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 475291 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 420-34 chr10 49066021 49066327 + 2 NA intron (NM_001031746, intron 4 of 7) Charlie2a|DNA|hAT-Charlie 49348 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 404-346 chr9 105387908 105388204 + 2 NA intron (NM_001330731, intron 15 of 15) intron (NM_001330731, intron 15 of 15) -59978 NM_001145313 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 244-267 chr4 80048568 80048770 + 2 NA intron (NM_001286781, intron 7 of 16) intron (NM_001286781, intron 7 of 16) 24560 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 208-213 chr5 85781584 85781775 + 2 NA Intergenic Intergenic -500765 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 577-46 chr11 122291564 122291918 + 2 NA intron (NR_137180, intron 2 of 4) L1MB3|LINE|L1 17746 NR_137193 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 534-266 chr8 129746112 129746459 + 2 NA Intergenic HAL1b|LINE|L1 40339 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 278-309 chr4 54711611 54711847 + 2 NA intron (NM_000222, intron 7 of 20) AluSx1|SINE|Alu 53801 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 507-105 chr18 41873596 41873942 + 2 NA Intergenic Intergenic -81465 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 275-28 chr1 241298617 241298844 + 2 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 57096 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 313 chr1 18796042 18796199 + 2 NA Intergenic Intergenic 63541 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 346-363 chr4 127313390 127313713 + 2 NA Intergenic L1MB1|LINE|L1 -319406 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 286-461 chr8 108029824 108030039 + 2 NA intron (NM_178565, intron 2 of 5) L2c|LINE|L2 52008 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 254-299 chr5 19274039 19274217 + 2 NA Intergenic Intergenic 612144 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 302-93 chr12 1561771 1562015 + 2 NA Intergenic L2b|LINE|L2 -29701 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 460-78 chr14 44803221 44803480 + 2 NA Intergenic Intergenic -4224 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 468-113 chr17 53644147 53644464 + 2 NA Intergenic L1MA1|LINE|L1 -178622 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 484-271 chr8 119681525 119681943 + 2 NA Intergenic AluJb|SINE|Alu -8344 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 284-266 chr3 100504352 100504527 + 2 NA intron (NM_018004, intron 1 of 5) L2|LINE|L2 11820 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 519-148 chr3 105965412 105965863 + 2 NA Intergenic Intergenic -96236 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 647-24 chr13 74739784 74740381 + 2 NA Intergenic Intergenic 187239 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 477-295 chr8 137502292 137502665 + 2 NA Intergenic Intergenic -88890 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 365-32 chr1 237133159 237133458 + 2 NA intron (NM_001035, intron 1 of 104) L2|LINE|L2 91124 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 557-147 chr4 64442334 64442795 + 2 NA Intergenic Intergenic -33104 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 245-268 chr4 166115837 166116056 + 2 NA Intergenic Intergenic 242709 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 649-19 chr12 45619430 45620002 + 2 NA Intergenic Intergenic 108205 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 336-219 chr18 1096642 1096898 + 2 NA Intergenic L1MB3|LINE|L1 -168777 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 275-50 chr10 82599896 82600086 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -367071 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 274-405 chr8 134228246 134228504 + 2 NA Intergenic MIRb|SINE|MIR 341879 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 316-421 chr5 4579381 4579675 + 2 NA Intergenic Intergenic -193953 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 400-183 chr2 186184900 186185224 + 2 NA Intergenic L1MB3|LINE|L1 -98745 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 295-255 chr20 38101459 38101662 + 2 NA Intergenic L1MEc|LINE|L1 63710 NM_001323318 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 242-178 chr2 59509879 59510059 + 2 NA Intergenic LTR89|LTR|ERVL? 292261 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 327-47 chr10 54431194 54431416 + 2 NA intron (NM_001142773, intron 2 of 31) L1MA2|LINE|L1 -54925 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 198-212 chr6 40749884 40750028 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -162592 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 267-213 chr2 172198056 172198227 + 2 NA Intergenic L1ME1|LINE|L1 95135 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 376-248 chr3 74224852 74225214 + 2 NA Intergenic Intergenic 296107 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 334-326 chr22 33768770 33768947 + 2 NA intron (NM_001362953, intron 1 of 14) MER5A1|DNA|hAT-Charlie 43872 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 376-7 chr1 73294475 73294811 + 2 NA Intergenic MIR3|SINE|MIR -11527 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 356-97 chr12 1588532 1588730 + 2 NA intron (NM_152441, intron 1 of 1) intron (NM_152441, intron 1 of 1) 5950 NM_152441 144699 Hs.367956 NM_152441 ENSG00000171823 FBXL14 Fbl14 F-box and leucine rich repeat protein 14 protein-coding 362-347 chr5 39103400 39103592 + 2 NA Intergenic Intergenic -29097 NM_001285440 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 482-206 chr5 121422448 121422910 + 2 NA Intergenic L2a|LINE|L2 100129 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 533-66 chr15 91524769 91525108 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 61599 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 349-347 chr3 159405127 159405314 + 2 NA intron (NM_001197108, intron 1 of 6) L1MA3|LINE|L1 122574 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 304-249 chr2 48521400 48521606 + 2 NA Intergenic HAL1|LINE|L1 -8422 NM_001198593 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 406-166 chr20 40418129 40418506 + 2 NA Intergenic Intergenic 270919 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 323-578 chr9 35176840 35177057 + 2 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 14939 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 279-285 chr4 31523041 31523225 + 2 NA intron (NR_149121, intron 1 of 2) L1MA4|LINE|L1 16589 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 282-138 chr14 84189660 84189873 + 2 NA Intergenic Intergenic -1082166 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 264-155 chr16 64537694 64537950 + 2 NA Intergenic MER4E|LTR|ERV1 584241 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 229-70 chr11 98058318 98058475 + 2 NA Intergenic Intergenic -962553 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 575-140 chr5 3038738 3039224 + 2 NA Intergenic L1PREC2|LINE|L1 121127 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 309-119 chr12 118613174 118613345 + 2 NA Intergenic L1MEg|LINE|L1 148420 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 439-116 chr18 64052008 64052422 + 2 NA Intergenic Intergenic -51876 NR_033881 284294 Hs.385642 NR_033881 ENSG00000267134 LINC01924 - long intergenic non-protein coding RNA 1924 ncRNA 436-180 chr3 34529070 34529455 + 2 NA Intergenic L2|LINE|L2 730632 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 237-9 chr1 75884838 75884992 + 2 NA intron (NM_002440, intron 15 of 19) intron (NM_002440, intron 15 of 19) 47489 NR_026546 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 506-230 chr5 84197478 84197900 + 2 NA intron (NM_001278642, intron 2 of 9) intron (NM_001278642, intron 2 of 9) 187178 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 314-53 chr10 9552550 9552748 + 2 NA Intergenic L1MEc|LINE|L1 -257056 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 257-299 chr4 59813911 59814085 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 800425 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 298-493 chr9 30677491 30677761 + 2 NA Intergenic Intergenic -269172 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 344-352 chr4 46424095 46424358 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -34098 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 352-47 chr10 58600617 58600817 + 2 NA intron (NM_001080512, intron 1 of 20) Tigger2a|DNA|TcMar-Tigger 87845 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 263-304 chr4 127556073 127556319 + 2 NA Intergenic Intergenic -76761 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 530-260 chr8 126117843 126118182 + 2 NA Intergenic Intergenic -166815 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 175-143 chr6 61926110 61926245 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 352047 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 218-260 chr5 20110084 20110295 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -121989 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 217-57 chr11 11380332 11380517 + 2 NA intron (NM_001363464, intron 3 of 9) L3|LINE|CR1 -27174 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 391-135 chr17 35484349 35484626 + 2 NA intron (NM_001363830, intron 2 of 4) FordPrefect_a|DNA|hAT-Tip100 3252 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 244-256 chr4 57493584 57493758 + 2 NA Intergenic Intergenic 67799 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 743-84 chr8 119271403 119271883 + 2 NA Intergenic L2a|LINE|L2 -24786 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 466-187 chr4 81564438 81564794 + 2 NA Intergenic AluSg|SINE|Alu -92709 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 470-104 chr18 64310384 64310830 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -50552 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 410-338 chrX 64006167 64006445 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 199402 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 209-333 chr8 120805710 120805868 + 2 NA intron (NM_021021, intron 1 of 6) MIRc|SINE|MIR 6257 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 350-471 chr7 25732025 25732299 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 18870 NR_157815 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 381-393 chr8 132298891 132299163 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 148235 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 236-303 chr6 69188012 69188217 + 2 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 552832 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 247-101 chr13 53831673 53831879 + 2 NA intron (NR_047488, intron 1 of 5) intron (NR_047488, intron 1 of 5) 16357 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 448-302 chr9 104490638 104491026 + 2 NA Intergenic Intergenic -13431 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 353-96 chr11 107068671 107068881 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -50300 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 285-7 chr1 61554558 61554753 + 2 NA Intergenic Intergenic -99587 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 223-31 chr10 31414498 31414673 + 2 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -14830 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 381-123 chr16 59461476 59461690 + 2 NA Intergenic L1MEd|LINE|L1 293608 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 359-308 chr3 18065304 18065584 + 2 NA intron (NR_161333, intron 4 of 4) MIRb|SINE|MIR 102892 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 246-358 chr7 4399855 4400043 + 2 NA Intergenic Intergenic -265112 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 278-257 chr22 26222193 26222453 + 2 NA intron (NM_001184776, intron 1 of 14) MIR3|SINE|MIR 52849 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 509-226 chr6 159333552 159333907 + 2 NA Intergenic L1MCc|LINE|L1 -49802 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 272-412 chr7 27971693 27971935 + 2 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -208643 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 307-58 chr10 62242222 62242387 + 2 NA intron (NM_001282941, intron 3 of 4) L1M6|LINE|L1 26540 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 334-436 chr5 126995695 126995975 + 2 NA intron (NM_178450, intron 1 of 4) L2c|LINE|L2 34723 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 356-369 chr4 113069818 113070079 + 2 NA intron (NM_001354232, intron 1 of 46) intron (NM_001354232, intron 1 of 46) 20295 NM_001148 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 437-229 chr5 126085660 126085992 + 2 NA Intergenic L1MA9|LINE|L1 -93751 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 575-115 chr3 56117978 56118515 + 2 NA intron (NR_132749, intron 6 of 17) MIRb|SINE|MIR -265652 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 246-52 chr10 65277493 65277691 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -293833 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 360-368 chr5 67139363 67139592 + 2 NA intron (NM_001297651, intron 16 of 25) MIRb|SINE|MIR 57322 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 536-143 chr2 235408950 235409325 + 2 NA Intergenic L2c|LINE|L2 -84906 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 250-349 chr5 86319893 86320118 + 2 NA Intergenic L1ME1|LINE|L1 37561 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 274-110 chr13 83189776 83190021 + 2 NA Intergenic Intergenic 692495 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 462-270 chr7 91798605 91798879 + 2 NA Intergenic MIRb|SINE|MIR 81960 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 214-100 chr14 69854261 69854413 + 2 NA Intergenic Intergenic -25079 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 650-101 chr6 39601307 39601764 + 2 NA intron (NM_001289020, intron 6 of 21) L3|LINE|CR1 123873 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 645-112 chr7 34649454 34650002 + 2 NA intron (NR_033664, intron 2 of 4) MIR|SINE|MIR -8490 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 134-84 chr7 124418045 124418129 + 2 NA Intergenic Intergenic -65991 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 169-58 chr2 66771566 66771674 + 2 NA Intergenic Intergenic -68393 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 113-17 chr14 59390606 59390694 + 2 NA Intergenic L1MC4a|LINE|L1 74730 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 338-229 chr18 42711083 42711406 + 2 NA Intergenic Intergenic 404441 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 263-56 chr10 82039858 82040089 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 162286 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 198-55 chr12 75507573 75507751 + 2 NA intron (NM_007043, intron 2 of 9) intron (NM_007043, intron 2 of 9) 3947 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 587-18 chr10 113207535 113207940 + 2 NA Intergenic L1MA2|LINE|L1 78466 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 649-3 chr1 154060141 154060632 + 2 NA intron (NM_001159484, intron 20 of 37) intron (NM_001159484, intron 20 of 37) 44206 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 587-105 chr3 70575230 70575684 + 2 NA Intergenic Intergenic -262819 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 506-169 chr21 10719962 10720340 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 198637 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 205-137 chr2 56085466 56085572 + 2 NA intron (NR_135590, intron 1 of 1) Zaphod|DNA|hAT-Tip100 4863 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 251-257 chr3 193065127 193065289 + 2 NA Intergenic L2c|LINE|L2 -147352 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 319-220 chr19 40918690 40918859 + 2 NA Intergenic L1PA5|LINE|L1 -5491 NR_001278 1556 Hs.529117 NR_001278 ENSG00000256612 CYP2B7P CYP2B|CYP2B7|CYP2B7P1 cytochrome P450 family 2 subfamily B member 7, pseudogene pseudo 329-204 chr16 54106312 54106622 + 2 NA intron (NM_001363988, intron 9 of 9) (TA)n|Simple_repeat|Simple_repeat 67074 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 307-73 chr10 122963237 122963512 + 2 NA Intergenic L1MC4a|LINE|L1 -9147 NM_024942 80007 Hs.501286 NM_024942 ENSG00000119965 C10orf88 - chromosome 10 open reading frame 88 protein-coding 474-212 chr4 81290197 81290596 + 2 NA Intergenic Intergenic -75174 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 653-136 chrX 95556227 95556843 + 2 NA Intergenic MER66-int|LTR|ERV1 -493309 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 599-6 chr1 172762958 172763414 + 2 NA Intergenic Intergenic 104083 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 231-288 chr5 68602385 68602595 + 2 NA Intergenic MIRc|SINE|MIR 309913 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 258-34 chr1 235680158 235680393 + 2 NA intron (NM_000081, intron 48 of 52) AluJr4|SINE|Alu -29521 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 212-135 chr19 34889247 34889385 + 2 NA Intergenic Intergenic 9627 NR_046222 100652909 Hs.374015 NR_046222 ENSG00000271649 LINC00904 - long intergenic non-protein coding RNA 904 ncRNA 977-3 chr14 67135811 67136561 + 2 NA intron (NM_001024218, intron 16 of 21) intron (NM_001024218, intron 16 of 21) -53254 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 347-25 chr1 181956548 181956745 + 2 NA Intergenic L1PA7|LINE|L1 105066 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 278-457 chr9 91298500 91298744 + 2 NA intron (NM_001306190, intron 3 of 8) intron (NM_001306190, intron 3 of 8) 63302 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 530-73 chr14 52637410 52637751 + 2 NA non-coding (NR_148417, exon 8 of 8) non-coding (NR_148417, exon 8 of 8) 57978 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 450-54 chr11 109455169 109455446 + 2 NA Intergenic Intergenic 33117 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 270-51 chr11 7492388 7492584 + 2 NA intron (NM_198474, intron 2 of 2) intron (NM_198474, intron 2 of 2) 6720 NM_001370501 283298 Hs.503500 NM_198474 ENSG00000183801 OLFML1 MVAL564|UNQ564 olfactomedin like 1 protein-coding 332-182 chr16 49331965 49332151 + 2 NA Intergenic Intergenic -41746 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 190-107 chr21 27301955 27302134 + 2 NA Intergenic LTR109A2|LTR|ERV1 -334956 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 334-141 chr14 46824433 46824631 + 2 NA Intergenic Intergenic -172751 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 268-241 chr3 75669219 75669418 + 2 NA Intergenic CpG -2963 NR_040005 401074 Hs.528540 NR_040004 ENSG00000242516 LINC00960 - long intergenic non-protein coding RNA 960 ncRNA 331-185 chr16 10233473 10233651 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy -50654 NM_000833 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 360-96 chr12 95008531 95008744 + 2 NA Intergenic AluSz6|SINE|Alu -4924 NM_001258338 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 373-65 chr10 107221133 107221350 + 2 NA Intergenic L1MC4|LINE|L1 -56535 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 232-247 chr3 96652205 96652381 + 2 NA Intergenic L1ME3A|LINE|L1 -162301 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 339-536 chr7 82847139 82847414 + 2 NA intron (NM_033026, intron 10 of 24) intron (NM_033026, intron 10 of 24) 315608 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 353-558 chr9 81047995 81048272 + 2 NA Intergenic Intergenic 641402 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 532-72 chr14 87785533 87785876 + 2 NA Intergenic MER21C|LTR|ERVL -130410 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 454-153 chr2 67786567 67786988 + 2 NA Intergenic Intergenic 38785 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 248-60 chr11 23064297 23064461 + 2 NA Intergenic AluJr|SINE|Alu -203905 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 392-349 chr9 106116435 106116690 + 2 NA Intergenic Intergenic 422021 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 333-317 chr21 18865664 18865984 + 2 NA Intergenic L1PREC2|LINE|L1 -106012 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 281-208 chr2 61652949 61653194 + 2 NA Intergenic MER31-int|LTR|ERV1 -114715 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 520-3 chr1 45779227 45779725 + 2 NA Intergenic AluSq2|SINE|Alu -24131 NM_001324320 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 664-21 chr10 90237458 90237903 + 2 NA Intergenic LTR87|LTR|ERVL? -280307 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 515-181 chr4 65226820 65227234 + 2 NA Intergenic Intergenic -222527 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 378-457 chr9 97842358 97842693 + 2 NA intron (NR_147055, intron 1 of 10) L1MD3|LINE|L1 10555 NR_147055 101928337 NR_147055 ENSG00000236130 PTCSC2 - papillary thyroid carcinoma susceptibility candidate 2 ncRNA 278-232 chr2 161103759 161103955 + 2 NA Intergenic (AAATAA)n|Simple_repeat|Simple_repeat -33098 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 238-188 chr2 154335359 154335562 + 2 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 121978 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 311-419 chr5 109245818 109246120 + 2 NA intron (NR_149040, intron 3 of 3) L1ME2|LINE|L1 80400 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 183-38 chr12 100452872 100453026 + 2 NA Intergenic Intergenic -20917 NR_135146 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 223-154 chr2 64252301 64252468 + 2 NA intron (NR_120420, intron 4 of 4) MER97d|DNA|hAT-Tip100 23983 NR_120420 100507006 Hs.442789 NR_120420 LOC100507006 - uncharacterized LOC100507006 ncRNA 336-253 chr2 5423087 5423380 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 267885 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 193-88 chr19 29489722 29489888 + 2 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 35947 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 194-196 chr7 33888826 33888964 + 2 NA Intergenic MIRb|SINE|MIR -16020 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 582-73 chr2 82383866 82384332 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -472704 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 485-313 chr9 96758826 96759148 + 2 NA exon (NM_014930, exon 6 of 6) exon (NM_014930, exon 6 of 6) 19100 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 197-168 chr5 60702309 60702499 + 2 NA Intergenic Intergenic -2238 NM_018369 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 688-82 chr4 32387800 32388353 + 2 NA Intergenic L1MEc|LINE|L1 37038 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 363-61 chr10 104469567 104469770 + 2 NA Intergenic L1ME1|LINE|L1 10607 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 335-95 chr11 61016372 61016575 + 2 NA intron (NM_001254750, intron 8 of 10) MLT1J|LTR|ERVL-MaLR 44793 NR_045638 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 364-234 chr2 193781960 193782193 + 2 NA Intergenic L1MC1|LINE|L1 -562193 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 272-35 chr10 11897936 11898121 + 2 NA Intergenic Intergenic -3318 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 341-399 chr4 133066433 133066662 + 2 NA Intergenic L1MC|LINE|L1 82569 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 327-387 chr5 13897506 13897753 + 2 NA intron (NM_001369, intron 15 of 78) intron (NM_001369, intron 15 of 78) 46851 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 226-225 chr3 80697258 80697480 + 2 NA Intergenic Intergenic -67528 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 422-17 chr1 209092894 209093230 + 2 NA Intergenic MER90a|LTR|ERV1 120608 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 261-14 chr1 85638159 85638361 + 2 NA Intergenic L1M4|LINE|L1 57499 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 404-350 chrX 77809938 77810189 + 2 NA Intergenic L1PB2|LINE|L1 -23847 NM_000489 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 620-47 chr16 78962393 78962793 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 638144 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 374-275 chr4 46395058 46395359 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -5080 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 617-67 chr2 136850762 136851128 + 2 NA intron (NM_001316349, intron 1 of 27) L1MEi|LINE|L1 85400 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 392-271 chr6 24397021 24397306 + 2 NA Intergenic LTR8B|LTR|ERV1 -5745 NM_001286264 57380 Hs.658612 NM_020662 ENSG00000124532 MRS2 HPT|MRS2L magnesium transporter MRS2 protein-coding 512-212 chr5 38212845 38213179 + 2 NA Intergenic Intergenic -45547 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 269-171 chr19 27573675 27573828 + 2 NA Intergenic ALR/Alpha|Satellite|centr -219680 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 303-322 chr4 84912923 84913107 + 2 NA intron (NM_014991, intron 2 of 67) Tigger2|DNA|TcMar-Tigger -52601 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 225-321 chr7 25926667 25926849 + 2 NA Intergenic Intergenic 23228 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 533-195 chr6 12924234 12924610 + 2 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) -32934 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 254-212 chr2 224903654 224903823 + 2 NA intron (NM_001290263, intron 3 of 55) intron (NM_001290263, intron 3 of 55) 43311 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 444-31 chr10 123065880 123066246 + 2 NA Intergenic Intergenic 57057 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 338-371 chr4 31112449 31112669 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -58585 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 520-168 chr20 46622239 46622590 + 2 NA intron (NM_001193340, intron 2 of 12) intron (NM_001193340, intron 2 of 12) 29045 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 271-385 chr6 110278541 110278764 + 2 NA intron (NM_001123364, intron 4 of 4) intron (NM_001123364, intron 4 of 4) 51406 NM_001354595 728464 Hs.634429 NM_001123364 ENSG00000053328 METTL24 C6orf186 methyltransferase like 24 protein-coding 506-14 chr1 119012533 119012868 + 2 NA Intergenic L2a|LINE|L2 -11295 NR_135035 105378933 Hs.599652 NR_135034 ENSG00000226172 LOC105378933 - uncharacterized LOC105378933 ncRNA 324-10 chr1 45446332 45446608 + 2 NA intron (NM_001320800, intron 1 of 9) AluJr4|SINE|Alu 44693 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 381-295 chr5 15067021 15067336 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -195400 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 347-324 chr3 137885206 137885385 + 2 NA Intergenic L1PA7|LINE|L1 113384 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 190-11 chr1 236665379 236665534 + 2 NA Intergenic L1MEc|LINE|L1 -20998 NM_001103 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 340-162 chr14 98049887 98050175 + 2 NA Intergenic L1MEc|LINE|L1 -71907 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 311-78 chr11 15293121 15293317 + 2 NA Intergenic Intergenic 144117 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 353-103 chr12 22660448 22660673 + 2 NA intron (NM_018638, intron 3 of 7) intron (NM_018638, intron 3 of 7) 35389 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 328-420 chr4 134855526 134855818 + 2 NA Intergenic MER21C|LTR|ERVL 267887 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 440-277 chrX 75239797 75240078 + 2 NA intron (NM_001363821, intron 4 of 9) L1PB1|LINE|L1 -34122 NM_001307944 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 155-96 chr8 82270694 82270773 + 2 NA Intergenic Intergenic -428447 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 518-40 chr10 106873401 106873889 + 2 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 291061 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 627-108 chr7 13825522 13825924 + 2 NA Intergenic LTR33A_|LTR|ERVL 160791 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 215-51 chr11 81618320 81618520 + 2 NA Intergenic L1MA5|LINE|L1 272416 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 290-386 chr6 57232553 57232744 + 2 NA Intergenic MamRep605|LTR?|LTR? -10334 NR_103822 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 326-276 chr2 179301397 179301650 + 2 NA Intergenic Intergenic -36691 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 371-39 chr10 26104585 26104842 + 2 NA intron (NM_017433, intron 17 of 34) intron (NM_017433, intron 17 of 34) -111594 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 278-131 chr15 53144908 53145111 + 2 NA Intergenic Intergenic 28644 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 302-478 chr8 138605694 138605976 + 2 NA intron (NM_152888, intron 58 of 64) MIR3|SINE|MIR -108105 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 278-356 chr5 155581843 155582052 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 568192 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 324-182 chr15 60180808 60181004 + 2 NA Intergenic Intergenic 176595 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 364-413 chr7 51545950 51546281 + 2 NA Intergenic MER34A|LTR|ERV1 -152859 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 441-99 chr18 6967007 6967417 + 2 NA intron (NM_005559, intron 48 of 62) intron (NM_005559, intron 48 of 62) 12535 NR_126040 101927188 Hs.680444 NR_126040 ENSG00000265069 LOC101927188 - uncharacterized LOC101927188 ncRNA 320-109 chr12 496016 496212 + 2 NA intron (NM_173593, intron 1 of 19) Chap1_Mam|DNA|hAT-Charlie 36175 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 455-33 chr10 82965920 82966260 + 2 NA intron (NR_163253, intron 8 of 10) L1MC3|LINE|L1 710999 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 529-29 chr11 30335982 30336416 + 2 NA intron (NM_152316, intron 3 of 3) intron (NM_152316, intron 3 of 3) 13095 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 273-476 chrUn_GL000216v2 5625 5835 + 2 NA NA (CATTC)n|Satellite|Satellite NA NA 409-238 chr5 12930055 12930379 + 2 NA intron (NR_147005, intron 2 of 4) MER63A|DNA|hAT-Blackjack 102669 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 234-59 chr11 59969701 59969899 + 2 NA intron (NR_130719, intron 6 of 8) intron (NR_130719, intron 6 of 8) 26921 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 405-110 chr17 54367264 54367522 + 2 NA Intergenic Intergenic -533298 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 520-113 chr17 6890709 6891091 + 2 NA intron (NR_002710, intron 2 of 13) intron (NR_002710, intron 2 of 13) -2877 NR_120453 245 Hs.378695 NR_002710 ENSG00000262943 ALOX12P2 ALOX12E arachidonate 12-lipoxygenase pseudogene 2 pseudo 240-437 chr9 31949750 31949922 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -434767 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 372-152 chr14 78112642 78112925 + 2 NA Intergenic LOR1b|LTR|ERV1 -57590 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 490-195 chr4 36776971 36777447 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -135309 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 181-84 chr21 19400673 19400823 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 499007 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 635-30 chr14 58408430 58408760 + 2 NA TTS (NM_001304487) TTS (NM_001304487) 12665 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 280-205 chr2 119418350 119418581 + 2 NA Intergenic MER34A1|LTR|ERV1 -13389 NM_183240 140738 Hs.26216 NM_183240 ENSG00000171227 TMEM37 PR|PR1 transmembrane protein 37 protein-coding 270-311 chr5 107028179 107028370 + 2 NA Intergenic Intergenic -17260 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 523-20 chr1 229135748 229136211 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 38822 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 301-275 chr3 19409732 19409996 + 2 NA intron (NM_144633, intron 7 of 15) L1PA16|LINE|L1 -94933 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 543-30 chr10 33621533 33621988 + 2 NA Intergenic Intergenic 150920 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 262-380 chr6 107265931 107266181 + 2 NA intron (NM_020381, intron 3 of 7) intron (NM_020381, intron 3 of 7) -150541 NM_001367314 57673 Hs.418045 NM_001080450 ENSG00000178409 BEND3 KIAA1553 BEN domain containing 3 protein-coding 353-35 chr1 199348944 199349140 + 2 NA intron (NR_147896, intron 3 of 3) Tigger2|DNA|TcMar-Tigger 200444 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 516-5 chr1 76639077 76639527 + 2 NA Intergenic Intergenic 139965 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 337-398 chr4 61434378 61434553 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 232293 NM_001371342 240-183 chr17 72133224 72133409 + 2 NA Intergenic AluSx1|SINE|Alu 12296 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 324-2 chr1 13551777 13551994 + 2 NA Intergenic L1MEd|LINE|L1 -31872 NM_198389 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 331-83 chr11 27591563 27591759 + 2 NA intron (NR_033314, intron 3 of 6) L2a|LINE|L2 42966 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 326-473 chr6 154613564 154613748 + 2 NA Intergenic Intergenic -102971 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 251-415 chr9 80451022 80451201 + 2 NA Intergenic Intergenic 476088 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 310-266 chr2 154144837 154145012 + 2 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 200530 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 278-126 chr15 26263601 26263777 + 2 NA Intergenic Intergenic 147876 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 565-16 chr10 66825683 66826059 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -100165 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 341-100 chr11 115871046 115871336 + 2 NA Intergenic Intergenic -110991 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 251-59 chr12 4311610 4311767 + 2 NA Intergenic Intergenic -9525 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 261-198 chr2 156622194 156622389 + 2 NA Intergenic L3|LINE|CR1 185912 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 243-55 chr10 84067359 84067557 + 2 NA Intergenic Intergenic -72051 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 375-22 chr1 206756576 206756931 + 2 NA Intergenic Intergenic -14020 NM_153758 29949 Hs.661017 NM_013371 ENSG00000142224 IL19 IL-10C|MDA1|NG.1|ZMDA1 interleukin 19 protein-coding 336-508 chr7 30716831 30717000 + 2 NA Intergenic Intergenic -16812 NM_001202481 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 471-156 chr21 28450523 28450856 + 2 NA Intergenic Intergenic -88629 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 343-297 chr20 14450006 14450309 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -104227 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 380-46 chr10 69549375 69549641 + 2 NA Intergenic LTR47A|LTR|ERVL 23914 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 338-255 chr2 56846892 56847164 + 2 NA Intergenic Intergenic -661258 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 205-165 chr20 43806544 43806680 + 2 NA Intergenic L1MB7|LINE|L1 -79610 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 434-146 chr2 80519438 80519765 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 206222 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 507-285 chrX 63419486 63419868 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -68345 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 268-316 chr5 86875118 86875313 + 2 NA Intergenic L1ME3|LINE|L1 128397 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 301-47 chr10 83887410 83887571 + 2 NA Intergenic Intergenic -210401 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 234-214 chr20 51288777 51288930 + 2 NA Intergenic Intergenic 164124 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 240-202 chr19 27950483 27950658 + 2 NA intron (NR_146733, intron 2 of 6) intron (NR_146733, intron 2 of 6) -156630 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 243-19 chr1 164722104 164722305 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 52437 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 369-439 chr9 11414076 11414300 + 2 NA Intergenic MER52A|LTR|ERV1 800982 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 368-10 chr1 71377087 71377433 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 295936 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 346-238 chr2 58374293 58374568 + 2 NA Intergenic L1MC5a|LINE|L1 98553 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 238-51 chr10 104895398 104895616 + 2 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -229291 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 297-198 chr2 9202740 9202917 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -3937 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 330-482 chr7 14673712 14673951 + 2 NA intron (NM_001350717, intron 12 of 24) intron (NM_001350717, intron 12 of 24) 167619 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 466-155 chr2 227924819 227925072 + 2 NA TTS (NM_001330004) TTS (NM_001330004) 53314 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 426-54 chr11 115948570 115948831 + 2 NA Intergenic L2c|LINE|L2 -188500 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 323-462 chr6 74507212 74507429 + 2 NA intron (NR_110856, intron 2 of 3) L1M1|LINE|L1 437869 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 353-413 chr5 93535725 93535933 + 2 NA intron (NR_109825, intron 5 of 8) L1MA6|LINE|L1 35514 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 194-27 chr11 20733018 20733170 + 2 NA intron (NM_201551, intron 2 of 18) intron (NM_201551, intron 2 of 18) 63508 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 432-300 chr9 103021711 103022136 + 2 NA Intergenic Intergenic 26590 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 336-158 chr14 38731467 38731772 + 2 NA Intergenic L1MC4|LINE|L1 -150977 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 392-192 chr22 47640792 47641141 + 2 NA intron (NR_122046, intron 2 of 8) L1MC4|LINE|L1 9292 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 285-464 chr9 130299345 130299563 + 2 NA intron (NM_001291815, intron 8 of 97) intron (NM_001291815, intron 8 of 97) 33694 NM_001291815 256158 Hs.32194 NM_144655 ENSG00000148357 HMCN2 - hemicentin 2 protein-coding 354-196 chr19 53210788 53211130 + 2 NA Intergenic Intergenic -1989 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 412-121 chr17 53047072 53047384 + 2 NA Intergenic L1PA15-16|LINE|L1 61723 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 136-77 chr6 151912007 151912091 + 2 NA intron (NM_001122741, intron 4 of 8) MER3|DNA|hAT-Charlie 102942 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 194-101 chr2 173874357 173874510 + 2 NA Intergenic Intergenic 89447 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 317-200 chr18 58282843 58283062 + 2 NA intron (NM_001144965, intron 5 of 30) MLT1I|LTR|ERVL-MaLR 61381 NM_001144966 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 369-72 chr12 14189545 14189764 + 2 NA Intergenic Intergenic -175978 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 512-18 chr1 196200252 196200682 + 2 NA Intergenic Intergenic -111752 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 539-148 chr3 125344229 125344606 + 2 NA intron (NM_001348427, intron 1 of 9) intron (NM_001348427, intron 1 of 9) 12863 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 372-23 chr1 161753721 161753967 + 2 NA intron (NM_007240, intron 5 of 5) (TCTTTC)n|Simple_repeat|Simple_repeat 4058 NM_007240 11266 Hs.416216 NM_007240 ENSG00000081721 DUSP12 DUSP1|YVH1 dual specificity phosphatase 12 protein-coding 427-85 chr15 101558542 101558897 + 2 NA Intergenic Intergenic 55620 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 307-344 chr4 84977763 84977920 + 2 NA intron (NR_152782, intron 2 of 3) intron (NR_152782, intron 2 of 3) 10357 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 340-291 chr2 170329932 170330178 + 2 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 20888 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 590-134 chr5 91552021 91552446 + 2 NA Intergenic Intergenic -168916 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 226-13 chr1 90938719 90938928 + 2 NA exon (NM_201269, exon 3 of 6) exon (NM_201269, exon 3 of 6) 82685 NM_016620 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 593-134 chr7 50909097 50909514 + 2 NA Intergenic L1MA5|LINE|L1 -115852 NM_001371008 805-51 chr9 75305981 75306617 + 2 NA Intergenic L1PA11|LINE|L1 217785 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 392-122 chr18 40357376 40357691 + 2 NA Intergenic L2c|LINE|L2 291247 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 201-206 chr5 118895861 118896044 + 2 NA intron (NM_001308081, intron 4 of 5) MIRc|SINE|MIR -78634 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 527-78 chr14 37738911 37739320 + 2 NA exon (NM_001310135, exon 12 of 33) exon (NM_001310135, exon 12 of 33) -33268 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 280-48 chr10 49512677 49512905 + 2 NA intron (NM_001346440, intron 5 of 20) Tigger4b|DNA|TcMar-Tigger 11490 NM_170753 267004 Hs.49063 NM_170753 ENSG00000225830 PGBD3 - piggyBac transposable element derived 3 protein-coding 314-594 chr8 139965463 139965700 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 134954 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 602-139 chr8 140877537 140877954 + 2 NA intron (NM_001352737, intron 3 of 32) intron (NM_001352737, intron 3 of 32) 123259 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 558-153 chr4 67573931 67574354 + 2 NA intron (NM_012108, intron 2 of 8) MER63D|DNA|hAT-Blackjack 15415 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 315-61 chr10 67108127 67108422 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 96008 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 179-114 chr8 29539184 29539357 + 2 NA Intergenic Intergenic -188586 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 266-69 chr11 87053785 87054009 + 2 NA intron (NR_033149, intron 1 of 13) intron (NR_033149, intron 1 of 13) 15963 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 195-102 chr2 45377776 45377906 + 2 NA Intergenic L1MB8|LINE|L1 -122900 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 215-78 chr14 44972940 44973095 + 2 NA intron (NR_131765, intron 1 of 19) L1MC1|LINE|L1 10827 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 222-259 chr4 24359105 24359292 + 2 NA intron (NM_001330752, intron 1 of 13) L2b|LINE|L2 113707 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 187-38 chr12 29990528 29990713 + 2 NA Intergenic Intergenic -205861 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 249-370 chr6 168603079 168603243 + 2 NA intron (NM_001166412, intron 8 of 12) THE1D|LTR|ERVL-MaLR 161977 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 198-209 chr6 18861498 18861650 + 2 NA Intergenic Intergenic 289790 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 345-104 chr11 132088178 132088403 + 2 NA intron (NR_147849, intron 2 of 6) intron (NR_147849, intron 2 of 6) 177472 NM_001144059 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 424-280 chr8 111714729 111715134 + 2 NA Intergenic Intergenic 338292 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 527-82 chr14 44036382 44036780 + 2 NA Intergenic L2|LINE|L2 470702 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 239-61 chr11 84687225 84687397 + 2 NA intron (NM_001351274, intron 5 of 26) MIR|SINE|MIR 33631 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 274-351 chr7 46795990 46796227 + 2 NA Intergenic L1MC3|LINE|L1 -98986 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 355-283 chr20 39664775 39665083 + 2 NA Intergenic MER21C|LTR|ERVL -339532 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 201-183 chr4 153042376 153042528 + 2 NA Intergenic Intergenic 99469 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 233-237 chr3 79199175 79199328 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -179792 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 655-28 chr12 34569936 34570341 + 2 NA Intergenic ALR/Alpha|Satellite|centr 547642 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 294-280 chr22 48624290 48624541 + 2 NA intron (NM_015381, intron 1 of 3) L1MC3|LINE|L1 48075 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 340-373 chr3 120534461 120534720 + 2 NA Intergenic L1PA17|LINE|L1 -61746 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 418-126 chr2 128620748 128621053 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -243700 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 330-338 chr22 47466812 47467015 + 2 NA intron (NR_109967, intron 1 of 2) L1MEi|LINE|L1 20198 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 354-503 chr9 137747993 137748323 + 2 NA intron (NM_001354263, intron 6 of 26) Charlie1|DNA|hAT-Charlie 40248 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 338-407 chr5 8611304 8611503 + 2 NA Intergenic L1MA6|LINE|L1 150478 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 353-321 chr3 43330786 43331090 + 2 NA intron (NM_001100594, intron 2 of 5) intron (NM_001100594, intron 2 of 5) 21024 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 518-219 chr5 4781499 4781963 + 2 NA Intergenic Intergenic 8250 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 579-59 chr18 75448331 75448714 + 2 NA Intergenic L1MEg1|LINE|L1 -20819 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 312-102 chr12 33684779 33685082 + 2 NA Intergenic MER4A|LTR|ERV1 -245111 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 284-153 chr17 7934769 7934973 + 2 NA intron (NM_001353206, intron 4 of 19) MIR3|SINE|MIR 2665 NM_001037144 116840 Hs.348012 NM_053051 ENSG00000170037 CNTROB LIP8|PP1221 centrobin, centriole duplication and spindle assembly protein protein-coding 161-50 chr2 47893198 47893319 + 2 NA intron (NM_001190274, intron 1 of 22) intron (NM_001190274, intron 1 of 22) -4539 NM_025133 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 219-51 chr11 79011071 79011279 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 390934 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 264-30 chr1 248688759 248688983 + 2 NA Intergenic Intergenic -6567 NM_001004734 401994 Hs.449973 NM_001004734 ENSG00000189181 OR14I1 OR5BU1|OR5BU1P olfactory receptor family 14 subfamily I member 1 protein-coding 395-41 chr10 69550706 69550993 + 2 NA Intergenic LTR79|LTR|ERVL 22573 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 553-91 chr18 52364263 52364738 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 24303 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 354-162 chr16 17388006 17388232 + 2 NA intron (NM_022166, intron 1 of 11) Tigger5b|DNA|TcMar-Tigger 82841 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 270-247 chr3 133426239 133426466 + 2 NA TTS (NR_135277) TTS (NR_135277) 26296 NM_003571 8419 Hs.659862 NM_003571 ENSG00000170819 BFSP2 CP47|CP49|CTRCT12|LIFL-L|PHAKOSIN beaded filament structural protein 2 protein-coding 257-455 chrX 82291052 82291283 + 2 NA Intergenic Intergenic 1089065 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 530-263 chr8 133092843 133093216 + 2 NA intron (NM_001045556, intron 1 of 8) intron (NM_001045556, intron 1 of 8) 9573 NM_001045557 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 409-275 chr7 13576591 13576875 + 2 NA Intergenic Intergenic 409781 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 444-170 chr4 56128453 56128845 + 2 NA Intergenic Intergenic -41546 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 337-454 chr5 76513624 76513842 + 2 NA intron (NM_006633, intron 2 of 35) L1MC2|LINE|L1 -33676 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 366-332 chr4 172884158 172884479 + 2 NA intron (NM_001034845, intron 8 of 12) L1MA4|LINE|L1 -157440 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 277-171 chr19 37397237 37397413 + 2 NA Intergenic L1MC5a|LINE|L1 26226 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 277-283 chr4 44003509 44003707 + 2 NA Intergenic Intergenic -13253 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 504-15 chr1 213572037 213572358 + 2 NA Intergenic Intergenic -352552 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 186-33 chr12 39225489 39225617 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 217567 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 456-178 chr20 41311363 41311783 + 2 NA Intergenic Intergenic -11453 NM_015035 23051 Hs.380133 NM_015035 ENSG00000174306 ZHX3 TIX1 zinc fingers and homeoboxes 3 protein-coding 271-132 chr14 56548598 56548801 + 2 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) -31099 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 330-221 chr18 13144535 13144837 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -74074 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 190-140 chr4 186734938 186735064 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -11145 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 199-174 chr4 12016942 12017132 + 2 NA Intergenic L1M3c|LINE|L1 -206414 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 329-122 chr12 46890845 46891040 + 2 NA Intergenic Intergenic -64945 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 195-103 chr2 62724564 62724676 + 2 NA intron (NM_001142615, intron 2 of 22) L1PA13|LINE|L1 17723 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 543-121 chr2 46217326 46217746 + 2 NA Intergenic L1M1|LINE|L1 -79871 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 267-171 chr2 22313039 22313210 + 2 NA Intergenic L1MEd|LINE|L1 -223355 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 669-109 chr7 111684536 111685020 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -122261 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 484-92 chr17 49282510 49282875 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 5762 NR_106745 102465137 NR_106745 ENSG00000273500 MIR6129 hsa-mir-6129 microRNA 6129 ncRNA 634-32 chr11 109524205 109524621 + 2 NA Intergenic L1PA3|LINE|L1 102223 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 511-99 chr18 65648293 65648744 + 2 NA Intergenic L2a|LINE|L2 -101734 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 254-317 chr5 113707964 113708146 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 194361 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 330-84 chr11 19152867 19153100 + 2 NA intron (NM_019028, intron 8 of 16) intron (NM_019028, intron 8 of 16) 35815 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 422-67 chr13 26431742 26432100 + 2 NA Intergenic Intergenic -125762 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 281-324 chr4 91281663 91281884 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 995529 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 223-8 chr1 70211671 70211833 + 2 NA intron (NM_001190987, intron 1 of 12) intron (NM_001190987, intron 1 of 12) 6056 NM_001350607 9295 Hs.479693 NM_004768 ENSG00000116754 SRSF11 NET2|SFRS11|dJ677H15.2|p54 serine and arginine rich splicing factor 11 protein-coding 254-328 chr5 152255157 152255380 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 150011 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 509-127 chr2 221567583 221568022 + 2 NA intron (NM_001304537, intron 1 of 16) intron (NM_001304537, intron 1 of 16) 4502 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 221-62 chr12 46867782 46867949 + 2 NA Intergenic L1M2|LINE|L1 -41868 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 329-70 chr10 89061367 89061655 + 2 NA Intergenic L1ME3A|LINE|L1 -1825 NR_039826 100616128 NR_039826 ENSG00000283664 MIR4679-1 - microRNA 4679-1 ncRNA 347-40 chr10 9630664 9630917 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -335197 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 324-37 chr1 215158055 215158269 + 2 NA intron (NM_001017424, intron 3 of 6) intron (NM_001017424, intron 3 of 6) 75425 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 336-230 chr18 63010299 63010486 + 2 NA Intergenic L1MC2|LINE|L1 294851 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 593-77 chr2 108154262 108154763 + 2 NA Intergenic Intergenic 63329 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 349-42 chr1 247991585 247991790 + 2 NA TTS (NR_002145) TTS (NR_002145) 1420 NR_002145 26247 Hs.684887 NR_002145 ENSG00000224227 OR2L1P HSHTPCRX02|HTPCRX02|OR2L1|OR2L7P olfactory receptor family 2 subfamily L member 1 pseudogene pseudo 427-244 chr7 39325592 39325917 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 3380 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 552-169 chr5 18803444 18803858 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 996377 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 350-211 chr2 38932584 38932870 + 2 NA intron (NM_001145451, intron 5 of 15) intron (NM_001145451, intron 5 of 15) 13364 NM_001367623 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 223-106 chr16 7126972 7127155 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -205782 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 369-374 chr6 169223374 169223657 + 2 NA intron (NM_003247, intron 18 of 22) A-rich|Low_complexity|Low_complexity 10303 NR_134621 101929523 Hs.442696 NR_134621 ENSG00000226445 LOC101929523 - uncharacterized LOC101929523 ncRNA 260-4 chr1 49902777 49903000 + 2 NA intron (NM_001323575, intron 1 of 12) L1PA15|LINE|L1 121066 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 337-212 chr17 79504416 79504673 + 2 NA intron (NM_001350451, intron 1 of 14) MLT1D|LTR|ERVL-MaLR 11604 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 144-29 chr14 78307305 78307401 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -96366 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 534-33 chr10 72770481 72770885 + 2 NA intron (NR_073062, intron 3 of 9) L1M4b|LINE|L1 49654 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 140-38 chr2 46372768 46372903 + 2 NA intron (NM_001430, intron 7 of 15) intron (NM_001430, intron 7 of 15) 21332 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 245-287 chr5 114284267 114284430 + 2 NA Intergenic Intergenic -77722 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 541-93 chr17 72012193 72012587 + 2 NA Intergenic Intergenic 13589 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 382-166 chr19 57978520 57978741 + 2 NA exon (NM_001348022, exon 7 of 7) exon (NM_001348022, exon 7 of 7) -4096 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 256-248 chr3 8010310 8010531 + 2 NA intron (NR_110131, intron 1 of 3) Tigger17a|DNA|TcMar-Tigger 5887 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 493-271 chr7 21787382 21787744 + 2 NA exon (NM_001277115, exon 60 of 82) exon (NM_001277115, exon 60 of 82) 158336 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 336-246 chr19 37388791 37389108 + 2 NA exon (NM_032453, exon 5 of 5) exon (NM_032453, exon 5 of 5) 17850 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 431-220 chr5 38301090 38301320 + 2 NA intron (NM_152403, intron 1 of 21) L2-3_Crp|LINE|L2 -10219 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 135-48 chr3 113442148 113442244 + 2 NA promoter-TSS (NM_018338) promoter-TSS (NM_018338) -682 NM_018338 55779 Hs.584936 NM_018338 ENSG00000206530 CFAP44 SPGF20|WDR52 cilia and flagella associated protein 44 protein-coding 300-338 chr4 124843865 124844142 + 2 NA Intergenic Intergenic -131271 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 372-204 chr19 16928352 16928574 + 2 NA intron (NM_015692, intron 24 of 41) intron (NM_015692, intron 24 of 41) -31516 NR_147452 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 245-52 chr10 69310688 69310840 + 2 NA intron (NM_033500, intron 5 of 21) MER4B|LTR|ERV1 -5090 NM_033496 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 612-45 chr15 60268711 60269273 + 2 NA Intergenic L1PBa|LINE|L1 128994 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 286-206 chr2 60224603 60224862 + 2 NA Intergenic MLT2C2|LTR|ERVL 158304 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 232-175 chr2 82240867 82241022 + 2 NA Intergenic Intergenic -615859 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 125-23 chr18 5533779 5533842 + 2 NA intron (NM_001330557, intron 1 of 21) intron (NM_001330557, intron 1 of 21) 6746 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 239-279 chr4 63443382 63443533 + 2 NA Intergenic Intergenic 965993 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 406-2 chr1 20328750 20328998 + 2 NA intron (NM_001039500, intron 9 of 21) intron (NM_001039500, intron 9 of 21) 37999 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 299-57 chr10 77543579 77543781 + 2 NA intron (NM_001271519, intron 1 of 28) HAL1b|LINE|L1 94128 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 436-66 chr12 50336579 50336963 + 2 NA intron (NM_001145475, intron 4 of 7) intron (NM_001145475, intron 4 of 7) -53251 NM_016357 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 370-419 chr7 54529550 54529868 + 2 NA Intergenic Intergenic -12616 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 323-280 chr2 175646544 175646732 + 2 NA Intergenic L1PREC2|LINE|L1 355629 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 364-438 chr8 76810939 76811238 + 2 NA intron (NM_024721, intron 4 of 10) intron (NM_024721, intron 4 of 10) -127813 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 308-375 chr5 26789105 26789287 + 2 NA Intergenic Intergenic 249390 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 527-181 chr3 116233461 116233924 + 2 NA intron (NM_001318915, intron 1 of 8) L1MA4|LINE|L1 -126332 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 276-91 chr11 104667712 104667913 + 2 NA Intergenic Intergenic -58510 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 303-467 chr8 122258630 122258807 + 2 NA Intergenic Intergenic 309926 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 254-214 chr2 229617083 229617312 + 2 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 97358 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 474-100 chr16 31943902 31944286 + 2 NA Intergenic L1M4c|LINE|L1 70287 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 399-268 chr6 81166436 81166675 + 2 NA Intergenic Intergenic 586126 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 387-209 chr21 16965787 16966001 + 2 NA Intergenic L1M2a|LINE|L1 375657 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 182-169 chr8 87001961 87002119 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 135625 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 291-374 chr6 27359993 27360184 + 2 NA non-coding (NR_002722, exon 4 of 4) non-coding (NR_002722, exon 4 of 4) 11437 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 284-319 chr5 45741312 45741579 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -45065 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 247-89 chr12 60607497 60607710 + 2 NA Intergenic L1M2b|LINE|L1 918233 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 687-8 chr1 209194729 209195223 + 2 NA Intergenic LTR39|LTR|ERV1 -130480 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 386-205 chr20 37449211 37449489 + 2 NA Intergenic Intergenic 70953 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 288-393 chr7 4458362 4458537 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -223846 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 311-539 chr9 21020500 21020769 + 2 NA intron (NM_001321903, intron 3 of 8) intron (NM_001321903, intron 3 of 8) 11006 NM_001321903 401494 Hs.716678 NM_001010915 ENSG00000188921 HACD4 PTPLAD2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 310-31 chr1 217240386 217240589 + 2 NA Intergenic Intergenic -102785 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 246-423 chr8 130972748 130972967 + 2 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 68052 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 291-293 chr3 99095528 99095747 + 2 NA Intergenic Intergenic -193942 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 338-348 chr3 104132124 104132394 + 2 NA Intergenic FLAM_A|SINE|Alu -608143 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 391-181 chr2 98976538 98976879 + 2 NA Intergenic AluSq|SINE|Alu -40483 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 246-384 chr7 115959372 115959582 + 2 NA intron (NM_001018058, intron 2 of 6) L1MEh|LINE|L1 8836 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 322-101 chr11 110409066 110409339 + 2 NA Intergenic Intergenic -20746 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 412-195 chr21 42960163 42960564 + 2 NA Intergenic AluJb|SINE|Alu -9349 NR_049889 100847013 NR_049889 ENSG00000264580 MIR5692B - microRNA 5692b ncRNA 285-18 chr1 169035494 169035722 + 2 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 51397 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 489-48 chr12 6790525 6790975 + 2 NA intron (NM_001195016, intron 1 of 7) intron (NM_001195016, intron 1 of 7) 1222 NM_001195015 920 Hs.631659 NM_000616 ENSG00000010610 CD4 CD4mut CD4 molecule protein-coding 188-10 chr1 152061972 152062101 + 2 NA Intergenic Intergenic 18888 NM_001310142 100131107 NM_001310142 LOC100131107 - putative UPF0607 protein ENSP00000383783 protein-coding 477-79 chr12 59978173 59978462 + 2 NA Intergenic AluJo|SINE|Alu 288947 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 657-36 chr16 89855284 89855754 + 2 NA intron (NM_032451, intron 5 of 14) intron (NM_032451, intron 5 of 14) -18073 NM_014972 22980 Hs.415342 NM_014972 ENSG00000141002 TCF25 FKSG26|Hulp1|NULP1|PRO2620|hKIAA1049 transcription factor 25 protein-coding 389-44 chr10 95733720 95734062 + 2 NA intron (NM_001098175, intron 1 of 9) MamGypLTR1a|LTR|Gypsy -21761 NM_001164181 953 Hs.576612 NM_001776 ENSG00000138185 ENTPD1 ATPDase|CD39|NTPDase-1|SPG64 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 432-217 chr5 15436834 15437207 + 2 NA Intergenic L1ME1|LINE|L1 -63160 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 468-93 chr15 78402284 78402695 + 2 NA Intergenic L1ME3Cz|LINE|L1 -34942 NM_001354994 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA iron responsive element binding protein 2 protein-coding 200-74 chr14 43893303 43893447 + 2 NA Intergenic Intergenic 613908 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 333-617 chrX 34146315 34146506 + 2 NA Intergenic Intergenic -14080 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 518-47 chr10 126698861 126699286 + 2 NA Intergenic Intergenic -28563 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 209-228 chr4 96724822 96725001 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 414208 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 342-304 chr3 2699193 2699380 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -192929 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 325-456 chr5 110175681 110175887 + 2 NA Intergenic Intergenic 292602 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 301-105 chr13 78168879 78169131 + 2 NA intron (NR_047001, intron 1 of 5) MER52D|LTR|ERV1 114150 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 297-288 chr3 17716546 17716713 + 2 NA intron (NM_001349076, intron 1 of 22) intron (NM_001349076, intron 1 of 22) -16609 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 551-152 chr5 41550522 41551050 + 2 NA Intergenic L1PREC2|LINE|L1 -40185 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 268-180 chr2 19264783 19264967 + 2 NA Intergenic Intergenic -83554 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 227-51 chr10 101805305 101805489 + 2 NA intron (NM_012215, intron 6 of 15) AluSp|SINE|Alu 13047 NM_012215 10724 Hs.500842 NM_012215 ENSG00000198408 OGA MEA5|MGEA5|NCOAT O-GlcNAcase protein-coding 367-280 chr3 53685382 53685627 + 2 NA intron (NM_000720, intron 8 of 48) L1MEf|LINE|L1 160915 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 276-244 chr2 156249239 156249394 + 2 NA intron (NR_110250, intron 1 of 3) intron (NR_110250, intron 1 of 3) 5615 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 395-339 chr8 96684193 96684561 + 2 NA intron (NM_016134, intron 1 of 7) L1MA4|LINE|L1 39135 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 192-75 chr16 7207685 7207848 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -125079 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 475-94 chr16 25903327 25903634 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -121757 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 523-171 chr3 17138146 17138645 + 2 NA Intergenic Intergenic 205199 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 307-419 chr6 42302326 42302479 + 2 NA intron (NM_001297573, intron 3 of 17) intron (NM_001297573, intron 3 of 17) -84541 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 264-158 chr16 76187412 76187636 + 2 NA Intergenic L1P4a|LINE|L1 -89877 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 249-131 chr15 83121890 83122077 + 2 NA exon (NM_001353879, exon 5 of 10) exon (NM_001353879, exon 5 of 10) 14338 NM_001353884 53346 Hs.513094 NM_023003 ENSG00000136404 TM6SF1 - transmembrane 6 superfamily member 1 protein-coding 313-573 chrX 81857384 81857561 + 2 NA Intergenic L1MC3|LINE|L1 655370 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 338-307 chr21 22805057 22805301 + 2 NA Intergenic Intergenic -274105 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 596-98 chr2 115519032 115519486 + 2 NA intron (NM_001321912, intron 5 of 25) intron (NM_001321912, intron 5 of 25) 175444 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 245-195 chr2 103196492 103196733 + 2 NA Intergenic L1MD1|LINE|L1 -212183 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 429-218 chr4 161786504 161786899 + 2 NA intron (NM_001128428, intron 4 of 14) intron (NM_001128428, intron 4 of 14) -236032 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 330-377 chr4 47270339 47270652 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 193207 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 284-6 chr1 73636550 73636761 + 2 NA Intergenic L2a|LINE|L2 -38024 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 391-318 chr6 161193576 161193841 + 2 NA intron (NM_020133, intron 2 of 8) intron (NM_020133, intron 2 of 8) -31726 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 351-55 chr10 129398384 129398628 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -68735 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 247-68 chr11 101428018 101428188 + 2 NA Intergenic L1MA6|LINE|L1 91802 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 645-22 chr12 46053386 46053814 + 2 NA Intergenic L1PA16|LINE|L1 -63026 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 267-176 chr2 38332649 38332852 + 2 NA intron (NM_001330461, intron 1 of 12) intron (NM_001330461, intron 1 of 12) 43780 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 325-127 chr12 52727962 52728183 + 2 NA Intergenic L1ME1|LINE|L1 -24548 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 242-345 chr6 73575348 73575535 + 2 NA Intergenic FLAM_C|SINE|Alu -54409 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 267-131 chr16 12635962 12636157 + 2 NA Intergenic L1ME3G|LINE|L1 -84262 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 393-215 chr3 56077550 56077767 + 2 NA intron (NR_132749, intron 7 of 17) intron (NR_132749, intron 7 of 17) -225064 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 577-24 chr10 25677535 25677915 + 2 NA intron (NR_108069, intron 3 of 3) Charlie7|DNA|hAT-Charlie 26013 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 507-177 chr4 396609 396914 + 2 NA Intergenic SVA_D|Retroposon|SVA 46604 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 181-56 chr17 70728753 70728893 + 2 NA Intergenic AluSz6|SINE|Alu 473356 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 266-148 chr17 68708995 68709194 + 2 NA Intergenic L2b|LINE|L2 80940 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 547-234 chr8 36946396 36946776 + 2 NA Intergenic L1MA5|LINE|L1 162212 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 226-52 chr10 131451522 131451719 + 2 NA Intergenic LTR81B|LTR|Gypsy -139899 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 286-310 chr4 43936856 43937081 + 2 NA Intergenic L1PB4|LINE|L1 -79893 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 339-264 chr2 75939979 75940276 + 2 NA Intergenic L2b|LINE|L2 -229212 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 286-3 chr1 13752419 13752631 + 2 NA intron (NM_001135610, intron 6 of 7) intron (NM_001135610, intron 6 of 7) 3110 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 282-459 chr8 110247206 110247375 + 2 NA Intergenic L1PA15-16|LINE|L1 -271519 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 733-77 chr8 47305720 47306214 + 2 NA intron (NR_104581, intron 5 of 16) L1MB3|LINE|L1 45029 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 311-357 chr3 168936654 168936874 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 34819 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 336-119 chr12 13036262 13036443 + 2 NA Intergenic Intergenic -8029 NM_020853 57613 Hs.132660 NM_020853 ENSG00000084444 FAM234B KIAA1467 family with sequence similarity 234 member B protein-coding 146-72 chr5 98690525 98690631 + 2 NA Intergenic L1MB1|LINE|L1 -78054 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 657-82 chr6 6710870 6711331 + 2 NA Intergenic MER92C|LTR|ERV1 -88274 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 453-212 chr5 113860434 113860758 + 2 NA Intergenic L1M3f|LINE|L1 346902 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 389-39 chr10 81937833 81938133 + 2 NA intron (NR_163253, intron 2 of 10) L1MB1|LINE|L1 60296 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 217-195 chr2 200834667 200834824 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 22359 NM_001207068 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 476-80 chr14 50694057 50694481 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -25963 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 205-211 chr4 140398770 140398931 + 2 NA intron (NM_001130675, intron 9 of 15) intron (NM_001130675, intron 9 of 15) 25340 NM_001153663 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 252-37 chr10 42375743 42375977 + 2 NA Intergenic AluJb|SINE|Alu -7815 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 370-486 chrX 67838176 67838473 + 2 NA Intergenic L1MA2|LINE|L1 293701 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 202-223 chr6 39422071 39422205 + 2 NA intron (NM_001289020, intron 14 of 21) intron (NM_001289020, intron 14 of 21) 9252 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 316-200 chr16 51037597 51037845 + 2 NA intron (NR_039672, intron 2 of 6) L1MB3|LINE|L1 19963 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 303-97 chr12 87453861 87454057 + 2 NA Intergenic Intergenic 123220 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 397-117 chr17 52669324 52669637 + 2 NA Intergenic L1MEi|LINE|L1 -192641 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 401-85 chr14 43358388 43358641 + 2 NA Intergenic Intergenic 1148769 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 286-344 chr5 19436534 19436734 + 2 NA Intergenic Intergenic 449638 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 481-258 chr6 9631350 9631700 + 2 NA Intergenic L1M4a1|LINE|L1 -772977 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 428-90 chr17 15997200 15997608 + 2 NA intron (NM_001042697, intron 1 of 4) HAL1|LINE|L1 2300 NM_001042697 125150 Hs.593985 NM_001042697 ENSG00000214941 ZSWIM7 SWS1 zinc finger SWIM-type containing 7 protein-coding 298-14 chr1 119431776 119432052 + 2 NA Intergenic MIRb|SINE|MIR 16764 NM_000198 3284 Hs.654399 NM_000198 ENSG00000203859 HSD3B2 HSD3B|HSDB|SDR11E2 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2 protein-coding 301-104 chr13 66814233 66814454 + 2 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -10826 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 215-119 chr18 4733478 4733664 + 2 NA Intergenic Intergenic -278264 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 532-75 chr15 42344926 42345308 + 2 NA intron (NM_198141, intron 19 of 23) intron (NM_198141, intron 19 of 23) -14383 NM_024344 825 Hs.143261 NM_000070 ENSG00000092529 CAPN3 CANP3|CANPL3|LGMD2|LGMD2A|LGMDD4|LGMDR1|nCL-1|p94 calpain 3 protein-coding 355-542 chrX 78223211 78223479 + 2 NA Intergenic L1PREC2|LINE|L1 -83695 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 196-138 chr2 169202300 169202465 + 2 NA intron (NM_004525, intron 43 of 78) intron (NM_004525, intron 43 of 78) 121275 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 382-285 chr4 16274570 16274776 + 2 NA Intergenic AluSz6|SINE|Alu 48010 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 390-258 chr4 18455015 18455299 + 2 NA Intergenic Intergenic -433282 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 485-169 chr21 21733495 21733843 + 2 NA intron (NR_038872, intron 1 of 2) intron (NR_038872, intron 1 of 2) 3650 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 527-208 chr5 66392183 66392556 + 2 NA Intergenic MER4CL34|LTR|ERV1 119235 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 612-21 chr10 107456723 107457203 + 2 NA Intergenic Intergenic -292257 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 840-45 chr7 28867945 28868395 + 2 NA Intergenic Intergenic 90160 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 445-75 chr14 83791878 83792208 + 2 NA Intergenic Intergenic 1149411 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 280-94 chr12 77911665 77911876 + 2 NA intron (NM_001024383, intron 1 of 39) Charlie16a|DNA|hAT-Charlie 80876 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 124-8 chr10 47345703 47345776 + 2 NA Intergenic Intergenic -2624 NM_002900 5949 Hs.591928 NM_002900 ENSG00000265203 RBP3 D10S64|D10S65|D10S66|IRBP|RBPI|RP66 retinol binding protein 3 protein-coding 760-53 chr4 88251651 88252140 + 2 NA Intergenic AluSg|SINE|Alu -20269 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 324-319 chr20 60480291 60480547 + 2 NA Intergenic Intergenic 2308 NR_039758 100616362 NR_039758 ENSG00000266140 MIR4533 - microRNA 4533 ncRNA 602-22 chr11 81790455 81790974 + 2 NA Intergenic Intergenic 100122 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 236-137 chr16 90080174 90080370 + 2 NA Intergenic AluSx3|SINE|Alu -4342 NM_001098173 11105 Hs.406695 NM_052996 ENSG00000126856 PRDM7 PFM4|ZNF910 PR/SET domain 7 protein-coding 607-142 chr8 87039621 87040103 + 2 NA intron (NM_173538, intron 4 of 10) LTR8|LTR|ERV1 173447 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 451-120 chr2 210413958 210414311 + 2 NA intron (NR_110606, intron 1 of 4) L1PA15|LINE|L1 62571 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 162-129 chr8 63586405 63586500 + 2 NA Intergenic MIRb|SINE|MIR 120603 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 220-86 chr12 45249874 45250049 + 2 NA intron (NM_001025356, intron 1 of 19) intron (NM_001025356, intron 1 of 19) 33866 NM_001025356 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 182-80 chr19 44107892 44108047 + 2 NA exon (NM_001321645, exon 6 of 6) exon (NM_001321645, exon 6 of 6) 5214 NR_033341 100379224 Hs.585869 NR_033341 ENSG00000186019 LOC100379224 - uncharacterized LOC100379224 ncRNA 132-90 chr8 107120135 107120224 + 2 NA Intergenic Intergenic 216336 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 469-226 chr5 125025743 125026171 + 2 NA Intergenic L2a|LINE|L2 -10874 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 290-50 chr10 59248936 59249092 + 2 NA intron (NM_198215, intron 13 of 13) intron (NM_198215, intron 13 of 13) 71547 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 308-3 chr1 18229184 18229374 + 2 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 121481 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 334-590 chrX 97491724 97491937 + 2 NA intron (NM_006729, intron 26 of 26) L1MB1|LINE|L1 72705 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 306-375 chr5 5732746 5733013 + 2 NA Intergenic L1PA15|LINE|L1 310202 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 368-338 chr4 116004095 116004302 + 2 NA Intergenic AluY|SINE|Alu -295527 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 494-232 chr5 94981878 94982205 + 2 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 99825 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 437-268 chr8 62943143 62943390 + 2 NA intron (NR_130764, intron 5 of 6) L1PB1|LINE|L1 -34595 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 204-219 chr4 69090533 69090726 + 2 NA intron (NM_001349568, intron 2 of 6) THE1B|LTR|ERVL-MaLR -5845 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 665-10 chr10 35797295 35797816 + 2 NA intron (NR_110138, intron 2 of 2) intron (NR_110138, intron 2 of 2) 19253 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 312-270 chr2 161122796 161122986 + 2 NA Intergenic Intergenic -14064 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 651-97 chr5 53330936 53331389 + 2 NA Intergenic Intergenic -149467 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 295-150 chr15 47413717 47413888 + 2 NA intron (NM_001198999, intron 2 of 19) intron (NM_001198999, intron 2 of 19) 229713 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 222-124 chr15 92550982 92551131 + 2 NA Intergenic L1MB5|LINE|L1 21207 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 334-80 chr11 15714534 15714794 + 2 NA Intergenic Intergenic 70779 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 353-537 chr8 129669242 129669540 + 2 NA intron (NR_130917, intron 1 of 3) THE1B-int|LTR|ERVL-MaLR 10848 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 450-59 chr12 2226635 2226943 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -3308 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 278-317 chr4 98634151 98634302 + 2 NA intron (NM_005723, intron 1 of 7) intron (NM_005723, intron 1 of 7) 24385 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 913-31 chr5 92890574 92891238 + 2 NA Intergenic Intergenic 680437 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 352-221 chr2 21748501 21748759 + 2 NA Intergenic MER84|LTR|ERV1 -37978 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 328-498 chr6 50229413 50229660 + 2 NA Intergenic Intergenic -179607 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 438-57 chr11 85099162 85099529 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -175924 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 609-88 chr4 45426614 45427018 + 2 NA Intergenic Intergenic 697238 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 433-17 chr1 229833770 229834150 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 51858 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 312-127 chr13 58022422 58022691 + 2 NA Intergenic Intergenic -143271 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 251-311 chr5 104871988 104872189 + 2 NA Intergenic HUERS-P2-int|LTR|ERV1 -227386 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 210-159 chr21 24373442 24373646 + 2 NA Intergenic L1PBa|LINE|L1 -52167 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 352-157 chr14 87293055 87293284 + 2 NA Intergenic MER113|DNA|hAT-Charlie 362125 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 242-326 chr5 143357912 143358132 + 2 NA intron (NR_157096, intron 1 of 7) intron (NR_157096, intron 1 of 7) 45261 NM_001364182 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 429-36 chr10 51784452 51784773 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) -85017 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 279-130 chr16 79662927 79663130 + 2 NA Intergenic Intergenic -62291 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 479-41 chr12 41988988 41989362 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 155699 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 407-44 chr11 24435606 24435986 + 2 NA Intergenic MIR3|SINE|MIR -61257 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 334-561 chr9 21084890 21085070 + 2 NA Intergenic L1M5|LINE|L1 -7038 NM_002176 3456 Hs.93177 NM_002176 ENSG00000171855 IFNB1 IFB|IFF|IFN-beta|IFNB interferon beta 1 protein-coding 261-229 chr22 28802953 28803186 + 2 NA Intergenic Intergenic -2497 NM_005080 7494 Hs.437638 NM_005080 ENSG00000100219 XBP1 TREB-5|TREB5|XBP-1|XBP2 X-box binding protein 1 protein-coding 443-234 chr5 3399124 3399518 + 2 NA Intergenic Intergenic -53495 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 390-136 chr16 79807600 79807932 + 2 NA Intergenic LTR72B|LTR|ERV1 12517 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 239-362 chr7 7071657 7071852 + 2 NA Intergenic SATR1|Satellite|Satellite -4709 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 295-10 chr1 84795969 84796190 + 2 NA Intergenic Intergenic 97127 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 700-29 chr14 68367856 68368419 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 260650 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 335-125 chr12 41382629 41382889 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -54980 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 519-78 chr17 53395145 53395627 + 2 NA Intergenic Intergenic 409881 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 143-4 chr1 225415212 225415299 + 2 NA intron (NM_194442, intron 7 of 13) intron (NM_194442, intron 7 of 13) 12783 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 234-287 chr4 135436099 135436259 + 2 NA Intergenic L1M4|LINE|L1 -312620 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 556-25 chr10 85813045 85813554 + 2 NA intron (NM_017551, intron 8 of 15) L1MEf|LINE|L1 235568 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 465-4 chr1 24131800 24132089 + 2 NA intron (NM_021258, intron 4 of 6) L1MEb|LINE|L1 11196 NM_021258 58985 Hs.110915 NM_021258 ENSG00000142677 IL22RA1 CRF2-9|IL22R|IL22R1 interleukin 22 receptor subunit alpha 1 protein-coding 209-152 chr2 75280030 75280186 + 2 NA Intergenic L1ME4a|LINE|L1 -80588 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 253-281 chr3 187901509 187901739 + 2 NA Intergenic Intergenic 74783 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 326-496 chr7 54168472 54168771 + 2 NA Intergenic MER4B|LTR|ERV1 -162076 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 269-352 chr6 82492502 82492699 + 2 NA Intergenic Intergenic 128356 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 254-378 chr7 37748075 37748300 + 2 NA Intergenic Intergenic 64421 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 324-247 chr2 27276393 27276589 + 2 NA promoter-TSS (NM_001318950) promoter-TSS (NM_001318950) -674 NM_001318950 7781 Hs.467981 NM_003459 ENSG00000115194 SLC30A3 ZNT3 solute carrier family 30 member 3 protein-coding 163-123 chr8 108626986 108627099 + 2 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 160552 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 540-223 chr9 31856911 31857270 + 2 NA Intergenic L1PA15|LINE|L1 -475600 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 255-202 chr2 81775029 81775199 + 2 NA Intergenic L1MC2|LINE|L1 -308168 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 282-280 chr22 34701591 34701822 + 2 NA Intergenic L2c|LINE|L2 296210 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 670-22 chr11 91419559 91420096 + 2 NA Intergenic L1MC4|LINE|L1 -550625 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 173-113 chr5 116599479 116599611 + 2 NA intron (NR_147170, intron 2 of 2) intron (NR_147170, intron 2 of 2) -24722 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 658-42 chr14 60199556 60200042 + 2 NA Intergenic AluJr4|SINE|Alu -29935 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 276-417 chr6 147152199 147152378 + 2 NA intron (NR_034115, intron 3 of 10) intron (NR_034115, intron 3 of 10) -6637 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 200-55 chr12 55185142 55185298 + 2 NA Intergenic Intergenic -35805 NM_001005280 121364 Hs.554557 NM_001005280 ENSG00000179919 OR10A7 OR12-6 olfactory receptor family 10 subfamily A member 7 protein-coding 765-32 chr2 176549879 176550478 + 2 NA Intergenic Intergenic 50874 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 265-345 chr6 149416744 149416882 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 16551 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 212-136 chr19 36679628 36679783 + 2 NA Intergenic L1MA7|LINE|L1 7744 NR_110708 101927621 Hs.125653 NR_110707 ENSG00000225975 LINC01534 - long intergenic non-protein coding RNA 1534 ncRNA 213-93 chr14 79032166 79032321 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -167739 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 211-161 chr20 17256177 17256374 + 2 NA intron (NM_001201529, intron 1 of 10) L1MB7|LINE|L1 29235 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 252-286 chr3 191211362 191211600 + 2 NA intron (NM_198184, intron 1 of 4) L1ME3Cz|LINE|L1 12240 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 468-240 chr5 20404625 20404950 + 2 NA intron (NM_001349558, intron 1 of 15) Tigger1|DNA|TcMar-Tigger 99236 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 321-599 chr9 81073118 81073308 + 2 NA Intergenic Intergenic 616322 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 264-305 chr5 4193832 4193992 + 2 NA Intergenic Intergenic -579569 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 387-100 chr14 37616047 37616354 + 2 NA intron (NM_001310135, intron 2 of 32) L1ME1|LINE|L1 20571 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 247-157 chr17 55935492 55935667 + 2 NA Intergenic L1MA6|LINE|L1 184474 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 333-561 chr8 55033143 55033426 + 2 NA Intergenic L1MA9|LINE|L1 -68744 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 238-220 chr21 44384921 44385077 + 2 NA intron (NM_003307, intron 9 of 31) L1MB3|LINE|L1 31398 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 352-81 chr11 81085908 81086087 + 2 NA Intergenic L1PA16|LINE|L1 -323194 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 288-270 chr3 99949640 99949865 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 14646 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 521-220 chr6 119667013 119667358 + 2 NA intron (NR_134600, intron 2 of 3) L1MEg|LINE|L1 117377 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 566-83 chr2 27480656 27481060 + 2 NA intron (NM_015662, intron 8 of 47) intron (NM_015662, intron 8 of 47) 8885 NM_015662 26160 Hs.127401 NM_015662 ENSG00000138002 IFT172 BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim intraflagellar transport 172 protein-coding 552-214 chr8 116129236 116129667 + 2 NA intron (NR_046215, intron 5 of 13) intron (NR_046215, intron 5 of 13) 195608 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 463-296 chr8 134047315 134047736 + 2 NA Intergenic Intergenic 161029 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 404-351 chrX 81517392 81517642 + 2 NA Intergenic L1MA2|LINE|L1 315415 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 579-168 chr8 83884423 83884964 + 2 NA Intergenic Intergenic -298094 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 338-281 chr2 172347106 172347280 + 2 NA Intergenic Intergenic -80143 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 276-474 chr9 27444578 27444807 + 2 NA intron (NM_024761, intron 2 of 3) MIRb|SINE|MIR -79622 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 282-268 chr20 53453623 53453899 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -99009 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 387-29 chr10 423900 424149 + 2 NA intron (NM_014974, intron 4 of 36) intron (NM_014974, intron 4 of 36) -204540 NR_147612 101930421 Hs.654707 NR_147612 ENSG00000225140 LOC101930421 - uncharacterized LOC101930421 ncRNA 362-42 chr1 248340113 248340395 + 2 NA Intergenic HERVH-int|LTR|ERV1 -8521 NM_001001918 127066 Hs.553583 NM_001001918 ENSG00000177174 OR14C36 OR5BF1 olfactory receptor family 14 subfamily C member 36 protein-coding 279-215 chr20 15452279 15452550 + 2 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 255574 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 196-266 chr9 27491207 27491363 + 2 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -33029 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 270-445 chrX 87751190 87751360 + 2 NA Intergenic L1M3c|LINE|L1 233473 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 365-225 chr2 224197172 224197434 + 2 NA Intergenic Intergenic -157984 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 377-114 chr14 38355262 38355597 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -99336 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 656-33 chr12 23311445 23311862 + 2 NA Intergenic L1ME1|LINE|L1 136017 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 345-327 chr21 30665393 30665585 + 2 NA Intergenic Intergenic 22625 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 400-266 chr4 147896770 147897067 + 2 NA intron (NM_024605, intron 10 of 22) L1MCc|LINE|L1 114323 NR_039962 100616246 NR_039962 ENSG00000264274 MIR4799 - microRNA 4799 ncRNA 493-261 chr6 142968747 142969124 + 2 NA intron (NR_038987, intron 2 of 2) L1M4|LINE|L1 -23759 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 330-488 chr7 37414973 37415292 + 2 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) 33820 NM_014800 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 196-185 chr4 59810268 59810393 + 2 NA Intergenic Intergenic 796757 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 344-130 chr14 46242077 46242261 + 2 NA intron (NR_102702, intron 3 of 3) L2b|LINE|L2 178010 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 703-3 chr1 96333915 96334438 + 2 NA intron (NR_110693, intron 3 of 5) intron (NR_110693, intron 3 of 5) 39949 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 290-282 chr3 69408978 69409163 + 2 NA Intergenic MIRb|SINE|MIR -22982 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 118-5 chr10 28106229 28106306 + 2 NA intron (NR_134518, intron 10 of 16) intron (NR_134518, intron 10 of 16) -32889 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 304-135 chr14 32776952 32777199 + 2 NA intron (NM_004274, intron 12 of 13) L1MEc|LINE|L1 -161804 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 196-34 chr10 83988267 83988382 + 2 NA Intergenic Intergenic -151185 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 649-87 chr5 89620858 89621261 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 395661 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 198-199 chr5 83234291 83234426 + 2 NA intron (NM_001318012, intron 6 of 7) (TTAT)n|Simple_repeat|Simple_repeat 156811 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 755-52 chr5 73116640 73117082 + 2 NA Intergenic L2a|LINE|L2 -3714 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 216-270 chr5 6251069 6251222 + 2 NA Intergenic L1MA6|LINE|L1 86147 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 562-5 chr1 85626468 85626884 + 2 NA Intergenic Intergenic 45915 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 365-118 chr14 42939295 42939563 + 2 NA Intergenic MER20|DNA|hAT-Charlie 1332573 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 578-136 chr5 67218460 67218814 + 2 NA Intergenic Intergenic -21838 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 279-262 chr3 88685475 88685725 + 2 NA Intergenic Intergenic 347144 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 214-123 chr17 33037834 33038041 + 2 NA intron (NM_183377, intron 3 of 9) L3|LINE|CR1 45086 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 267-147 chr17 59376899 59377128 + 2 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) 10930 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 782 chr1 90788592 90789118 + 2 NA intron (NR_135038, intron 2 of 2) L2c|LINE|L2 47306 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 404-277 chr6 133884540 133884917 + 2 NA intron (NR_109982, intron 1 of 8) intron (NR_109982, intron 1 of 8) 4278 NR_109982 100507308 Hs.102408 NR_109982 ENSG00000227954 TARID EYA4-AS1 TCF21 antisense RNA inducing promoter demethylation ncRNA 290-24 chr1 166340806 166341019 + 2 NA Intergenic L1ME4b|LINE|L1 149127 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 533-14 chr10 36076066 36076423 + 2 NA Intergenic Intergenic 297942 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 620-79 chr21 21894212 21894823 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 147532 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 174-14 chr10 41767090 41767223 + 2 NA Intergenic ALR/Alpha|Satellite|centr 600889 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 263-103 chr14 48384410 48384669 + 2 NA Intergenic Intergenic -589525 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 352-152 chr14 68467215 68467494 + 2 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 161433 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 185-33 chr11 12618746 12618912 + 2 NA Intergenic Intergenic -55592 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 320-396 chr4 105287287 105287588 + 2 NA intron (NR_126420, intron 2 of 5) L1MA4A|LINE|L1 65444 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 359-27 chr1 165080813 165081024 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 275323 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 278-143 chr16 12200211 12200385 + 2 NA intron (NM_032167, intron 14 of 20) intron (NM_032167, intron 14 of 20) 223564 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 207-106 chr17 68623537 68623719 + 2 NA Intergenic MER119|DNA|hAT-Charlie -4526 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 331-3 chr1 17753789 17753987 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -1445 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 444-126 chr2 162634165 162634465 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -134621 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 780-34 chr20 56665181 56665643 + 2 NA Intergenic AluSx|SINE|Alu 36106 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 243-102 chr12 92689910 92690057 + 2 NA Intergenic Intergenic -12860 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 299-432 chr7 136480913 136481121 + 2 NA Intergenic Intergenic -387635 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 338-123 chr12 23932134 23932376 + 2 NA intron (NM_152989, intron 4 of 17) L1MC4|LINE|L1 17415 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 306-165 chr15 61148388 61148639 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 80789 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 272-391 chr6 98218830 98219024 + 2 NA Intergenic L1MC5a|LINE|L1 194396 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 293-461 chr8 137757092 137757255 + 2 NA Intergenic L1M1|LINE|L1 326372 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 609-83 chr3 186677867 186678296 + 2 NA 3' UTR (NM_000412, exon 7 of 7) 3' UTR (NM_000412, exon 7 of 7) 12129 NM_000412 3273 Hs.1498 NM_000412 ENSG00000113905 HRG HPRG|HRGP|THPH11 histidine rich glycoprotein protein-coding 134-68 chr5 64643571 64643670 + 2 NA Intergenic Intergenic -46883 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 266-415 chr8 72460742 72460956 + 2 NA Intergenic L1M5|LINE|L1 -76376 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 507-44 chr11 4445884 4446238 + 2 NA Intergenic L1PREC2|LINE|L1 -3234 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 232-141 chr18 10499314 10499506 + 2 NA Intergenic Intergenic -26617 NM_003826 8774 Hs.464622 NM_003826 ENSG00000134265 NAPG GAMMASNAP NSF attachment protein gamma protein-coding 368-295 chr3 95833639 95833983 + 2 NA Intergenic Intergenic -150618 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 307-445 chr7 31493428 31493643 + 2 NA Intergenic L2a|LINE|L2 -20536 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 289-121 chr12 119131442 119131605 + 2 NA intron (NM_194286, intron 8 of 12) intron (NM_194286, intron 8 of 12) 44961 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 350-295 chr21 45711158 45711444 + 2 NA intron (NM_001348238, intron 2 of 16) L1MC3|LINE|L1 -36713 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 346-312 chr3 60223140 60223458 + 2 NA intron (NM_001320900, intron 6 of 9) MIR|SINE|MIR -142390 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 432-269 chr7 48640478 48640858 + 2 NA intron (NM_152701, intron 59 of 61) intron (NM_152701, intron 59 of 61) -283879 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 289-32 chr1 205730907 205731063 + 2 NA intron (NM_022731, intron 1 of 6) intron (NM_022731, intron 1 of 6) 19197 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 360-262 chr20 31259082 31259297 + 2 NA intron (NM_001037730, intron 1 of 1) intron (NM_001037730, intron 1 of 1) 1525 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 306-146 chr14 61843534 61843760 + 2 NA intron (NM_001367656, intron 1 of 7) L1MA2|LINE|L1 30944 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 251-230 chr3 34545785 34545939 + 2 NA Intergenic Intergenic 747232 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 345-193 chr16 65263141 65263319 + 2 NA Intergenic L1MEf|LINE|L1 -86657 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 366-90 chr12 3718740 3718953 + 2 NA intron (NM_001144958, intron 2 of 19) L2a|LINE|L2 34263 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 365-303 chr4 119213403 119213754 + 2 NA promoter-TSS (NR_125931) promoter-TSS (NR_125931) 865 NM_001371398 165-139 chr9 89965957 89966078 + 2 NA Intergenic L1MB4|LINE|L1 -3399 NR_109791 101927847 Hs.584312 NR_109791 LOC101927847 - uncharacterized LOC101927847 ncRNA 222-13 chr1 168976167 168976345 + 2 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 110749 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 708-23 chr13 107148609 107149229 + 2 NA Intergenic Intergenic 172044 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 543-158 chr21 19656700 19657237 + 2 NA Intergenic Intergenic 242787 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 481-286 chr7 123890813 123891124 + 2 NA Intergenic LTR49-int|LTR|ERV1 -34273 NM_003117 6677 Hs.121494 NM_003117 ENSG00000106304 SPAM1 HEL-S-96n|HYA1|HYAL1|HYAL3|HYAL5|PH-20|PH20|SPAG15 sperm adhesion molecule 1 protein-coding 393-381 chr9 1459324 1459709 + 2 NA Intergenic Intergenic 408029 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 286-226 chr2 174498598 174498821 + 2 NA Intergenic Intergenic -11621 NM_001267051 151556 Hs.516604 NM_152529 ENSG00000163328 GPR155 DEP.7|DEPDC3|PGR22 G protein-coupled receptor 155 protein-coding 449-226 chr5 155067042 155067322 + 2 NA Intergenic Intergenic 53427 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 273-316 chr4 34239711 34239879 + 2 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 29952 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 229-189 chr2 100749065 100749281 + 2 NA Intergenic L1MA8|LINE|L1 -70966 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 262-183 chr18 56362254 56362407 + 2 NA Intergenic L1ME1|LINE|L1 -171068 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 271-185 chr19 24288410 24288589 + 2 NA Intergenic ALR/Alpha|Satellite|centr -125052 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 305-345 chr3 67165745 67165906 + 2 NA Intergenic Intergenic -59639 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 308-52 chr10 31663774 31663947 + 2 NA Intergenic Intergenic 245066 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 314-289 chr2 79546347 79546627 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 23304 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 393-260 chr5 5195436 5195788 + 2 NA intron (NM_139056, intron 8 of 22) intron (NM_139056, intron 8 of 22) 55282 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 419-218 chr5 2506780 2507076 + 2 NA Intergenic Intergenic -194727 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 265-314 chr5 104942600 104942771 + 2 NA Intergenic L1MEg|LINE|L1 -156789 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 228-348 chr8 120213658 120213827 + 2 NA intron (NM_021110, intron 13 of 47) intron (NM_021110, intron 13 of 47) 88640 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 360-158 chr16 52218310 52218533 + 2 NA Intergenic Intergenic -40143 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 203-33 chr11 6003083 6003242 + 2 NA promoter-TSS (NM_001005179) promoter-TSS (NM_001005179) 30 NM_001005179 120793 Hs.553571 NM_001005179 ENSG00000183389 OR56A4 OR11-49 olfactory receptor family 56 subfamily A member 4 protein-coding 384-371 chr8 85038959 85039293 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -68112 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 314-436 chr4 102144483 102144748 + 2 NA Intergenic L1PA16|LINE|L1 179697 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 195-170 chr4 111457884 111458040 + 2 NA Intergenic Intergenic -597315 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 237-255 chr3 174602560 174602711 + 2 NA Intergenic L1MA3|LINE|L1 -256699 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 321-558 chr8 87752820 87752981 + 2 NA Intergenic L1PA4|LINE|L1 121115 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 443-36 chr10 49433015 49433391 + 2 NA Intergenic L1MEd|LINE|L1 -37114 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 174-98 chr3 187201653 187201752 + 2 NA TTS (NM_153708) TTS (NM_153708) 4216 NM_153708 132112 Hs.518480 NM_153708 ENSG00000175077 RTP1 Z3CXXC1 receptor transporter protein 1 protein-coding 250-309 chr4 65821985 65822180 + 2 NA Intergenic Intergenic -151587 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 542-50 chr13 43548168 43548600 + 2 NA intron (NM_001347965, intron 1 of 15) MLT1K|LTR|ERVL-MaLR 81093 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 505-51 chr11 75161239 75161619 + 2 NA intron (NM_001145211, intron 1 of 13) L1MB7|LINE|L1 1597 NM_001145211 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 231-286 chr5 60454142 60454316 + 2 NA intron (NM_001364599, intron 1 of 16) L1PA10|LINE|L1 -33484 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 240-172 chr16 80049009 80049189 + 2 NA Intergenic MIR|SINE|MIR 253850 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 248-95 chr13 40045996 40046158 + 2 NA Intergenic L1M5|LINE|L1 -135732 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 233-42 chr10 66721242 66721399 + 2 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -204716 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 246-415 chr8 118101387 118101599 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 10326 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 417-96 chr15 99940705 99940967 + 2 NA Intergenic AluSx|SINE|Alu 133813 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 279-212 chr2 230233894 230234075 + 2 NA intron (NM_001278453, intron 1 of 23) Charlie1b|DNA|hAT-Charlie 8248 NM_007237 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 299-496 chrX 34234754 34234993 + 2 NA Intergenic Intergenic -102543 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 137-87 chr7 135101466 135101596 + 2 NA intron (NM_001305630, intron 2 of 2) intron (NM_001305630, intron 2 of 2) -46541 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 272-89 chr12 15430263 15430472 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 107859 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 209-200 chr3 73612685 73612876 + 2 NA intron (NM_015009, intron 1 of 9) MIR|SINE|MIR -10788 NR_046681 101927249 Hs.733334 NR_046681 PDZRN3-AS1 - PDZRN3 antisense RNA 1 ncRNA 390-425 chr9 106596126 106596486 + 2 NA Intergenic L2|LINE|L2 -4622 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 353-265 chr2 180345488 180345823 + 2 NA Intergenic Intergenic -338358 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 434-29 chr1 246150233 246150605 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 266993 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 320-10 chr1 63196195 63196511 + 2 NA intron (NR_038252, intron 5 of 11) intron (NR_038252, intron 5 of 11) 120904 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 355-324 chr3 73966372 73966678 + 2 NA Intergenic Intergenic 157281 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 365-240 chr21 19219279 19219638 + 2 NA Intergenic Intergenic -459646 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 524-118 chr2 118516617 118517050 + 2 NA Intergenic L1MEg|LINE|L1 86133 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 234-47 chr10 107095502 107095688 + 2 NA intron (NM_001206569, intron 1 of 25) MamGypLTR2c|LTR|Gypsy 69111 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 450-221 chr4 42388046 42388425 + 2 NA intron (NR_134668, intron 1 of 1) intron (NR_134668, intron 1 of 1) 3033 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 240-40 chr10 36554204 36554386 + 2 NA Intergenic Intergenic -571562 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 608-166 chr9 93730521 93730920 + 2 NA Intergenic Intergenic -88637 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 527-267 chr8 107147031 107147421 + 2 NA Intergenic Intergenic 189289 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 304-311 chr21 27783910 27784139 + 2 NA Intergenic L1M1|LINE|L1 61645 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 558-10 chr1 118608515 118608975 + 2 NA Intergenic L1MA10|LINE|L1 379598 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 371-263 chr3 191455185 191455456 + 2 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) -5843 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 340-270 chr2 100708574 100708907 + 2 NA Intergenic Intergenic 105001 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 486-242 chr5 66079666 66079951 + 2 NA 3' UTR (NM_001253698, exon 24 of 24) 3' UTR (NM_001253698, exon 24 of 24) -64492 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 227-82 chr12 69303789 69303924 + 2 NA Intergenic L1M4b|LINE|L1 -30638 NR_031692 100302182 NR_031692 ENSG00000283476 MIR1279 MIRN1279|hsa-mir-1279 microRNA 1279 ncRNA 370-418 chr7 51558568 51558854 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -165455 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 327-252 chr2 46715976 46716268 + 2 NA intron (NM_144949, intron 1 of 1) L1ME2|LINE|L1 16827 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 398-337 chr7 138338231 138338548 + 2 NA Intergenic HAL1|LINE|L1 -121870 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 182-111 chr3 121193925 121194063 + 2 NA intron (NM_001348343, intron 9 of 27) intron (NM_001348343, intron 9 of 27) 144354 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 159-74 chr5 44530011 44530139 + 2 NA Intergenic Intergenic -19793 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 222-264 chr4 51991144 51991313 + 2 NA Intergenic L2c|LINE|L2 29135 NM_001024611 339977 Hs.661450 NM_001024611 ENSG00000188993 LRRC66 - leucine rich repeat containing 66 protein-coding 366-22 chr1 158107360 158107702 + 2 NA Intergenic Intergenic 33109 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 147-64 chr4 9860513 9860632 + 2 NA intron (NM_001001290, intron 11 of 12) intron (NM_001001290, intron 11 of 12) 78938 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 510-229 chr5 73329889 73330256 + 2 NA Intergenic L1MDa|LINE|L1 -7834 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 116-39 chr5 144803986 144804079 + 2 NA Intergenic Intergenic 598641 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 196-183 chr4 55825987 55826181 + 2 NA intron (NM_001351574, intron 1 of 2) AluSq2|SINE|Alu 6081 NM_001351575 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 425-76 chr13 103129812 103130197 + 2 NA Intergenic MIR|SINE|MIR -63587 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 475-87 chr15 38922336 38922757 + 2 NA Intergenic Intergenic 225948 NR_160786 255-462 chr9 84525472 84525672 + 2 NA Intergenic L1MA3|LINE|L1 -142886 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 305-372 chr4 29254670 29254946 + 2 NA Intergenic Intergenic 40516 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 255-239 chr21 29173858 29174065 + 2 NA intron (NM_001286620, intron 4 of 4) AluJo|SINE|Alu -19533 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 204-121 chr17 70836332 70836455 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 365786 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 393-151 chr19 58067713 58067992 + 2 NA exon (NM_001289402, exon 5 of 5) exon (NM_001289402, exon 5 of 5) 8570 NM_003436 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 264-401 chr8 30517325 30517498 + 2 NA intron (NM_001008710, intron 5 of 8) intron (NM_001008710, intron 5 of 8) -121169 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 512-67 chr12 90987209 90987561 + 2 NA intron (NM_004950, intron 2 of 6) LTR19A|LTR|ERV1 17587 NM_004950 1833 Hs.435680 NM_004950 ENSG00000083782 EPYC DSPG3|PGLB|Pg-Lb|SLRR3B epiphycan protein-coding 254-333 chr5 164973099 164973335 + 2 NA Intergenic LTR25-int|LTR|ERV1 502938 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 347-458 chr7 26039706 26039941 + 2 NA Intergenic Intergenic -89837 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 318-541 chr8 72750550 72750789 + 2 NA non-coding (NR_110656, exon 3 of 3) non-coding (NR_110656, exon 3 of 3) 18624 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 394-67 chr11 127495816 127496027 + 2 NA Intergenic Intergenic 224851 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 202-9 chr1 169524754 169524910 + 2 NA intron (NM_000130, intron 19 of 24) intron (NM_000130, intron 19 of 24) -38862 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 295-258 chr20 45694446 45694728 + 2 NA intron (NM_172006, intron 2 of 3) L1MB5|LINE|L1 -7451 NM_172005 164237 Hs.406733 NM_172005 ENSG00000168634 WFDC13 C20orf138|WAP13|dJ601O1.3 WAP four-disulfide core domain 13 protein-coding 463-222 chr5 7482451 7482863 + 2 NA intron (NM_020546, intron 2 of 24) L1MA4|LINE|L1 86519 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 252-453 chr9 103654174 103654358 + 2 NA Intergenic Intergenic -329233 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 218-324 chr8 78828117 78828326 + 2 NA Intergenic L1MA6|LINE|L1 -9308 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 293-281 chr3 148958533 148958786 + 2 NA Intergenic Intergenic -32749 NM_001184720 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 329-390 chr3 178989270 178989449 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 82450 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 472-242 chr5 16249103 16249428 + 2 NA Intergenic MIRc|SINE|MIR 69024 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 220-311 chr6 2179788 2179962 + 2 NA intron (NM_001500, intron 1 of 10) intron (NM_001500, intron 1 of 10) -3884 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 555-158 chr5 43225424 43225837 + 2 NA intron (NR_072980, intron 1 of 3) intron (NR_072980, intron 1 of 3) 32778 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 193-77 chr17 13398839 13398997 + 2 NA Intergenic Intergenic -92158 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 307-497 chr8 136588073 136588257 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 57367 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 222-97 chr13 64811469 64811624 + 2 NA Intergenic Intergenic -735535 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 230-96 chr13 36744455 36744620 + 2 NA Intergenic Intergenic 70517 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 426-194 chr4 20903295 20903570 + 2 NA intron (NM_147182, intron 2 of 8) MER4E1|LTR|ERV1 -20722 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 222-183 chr2 115367043 115367212 + 2 NA intron (NM_001321912, intron 4 of 25) L1M6|LINE|L1 23312 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 180-153 chr7 8783618 8783732 + 2 NA Intergenic Intergenic 350066 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 290-133 chr14 63633644 63633819 + 2 NA intron (NM_080666, intron 1 of 2) intron (NM_080666, intron 1 of 2) 8140 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 743-52 chr3 61028724 61029160 + 2 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 222510 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 517-97 chr16 83031431 83031801 + 2 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) -41318 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 275-336 chr7 63159530 63159776 + 2 NA Intergenic L1MB1|LINE|L1 144403 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 312-304 chr21 28194251 28194521 + 2 NA intron (NR_126012, intron 3 of 5) L1PB4|LINE|L1 34281 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 257-232 chr20 12570599 12570807 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 366260 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 224-91 chr14 83634849 83635023 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 992304 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 264-377 chr7 6474034 6474286 + 2 NA intron (NM_001100603, intron 2 of 3) intron (NM_001100603, intron 2 of 3) 9992 NM_001100603 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 207-190 chr3 84876804 84876967 + 2 NA Intergenic Intergenic -5205 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 286-357 chr5 60061738 60061900 + 2 NA intron (NM_001349243, intron 2 of 16) L1PA8|LINE|L1 -168093 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 332-545 chr8 121190243 121190494 + 2 NA Intergenic Intergenic -378322 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 371-297 chr5 2437086 2437438 + 2 NA Intergenic Intergenic -125061 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 305-540 chr8 89863780 89864049 + 2 NA Intergenic MER31-int|LTR|ERV1 -37954 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 412 chr1 4766138 4766498 + 2 NA intron (NM_018836, intron 2 of 5) MER58A|DNA|hAT-Charlie 111709 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 270-433 chr9 106746043 106746231 + 2 NA Intergenic Intergenic -117029 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 556-164 chr4 100840865 100841210 + 2 NA Intergenic Intergenic -165924 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 255-210 chr2 165560801 165561019 + 2 NA intron (NM_001172173, intron 3 of 6) intron (NM_001172173, intron 3 of 6) -11426 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 364-258 chr22 25638965 25639264 + 2 NA intron (NM_001362778, intron 2 of 19) L1ME2|LINE|L1 74439 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 381-74 chr11 79808263 79808553 + 2 NA Intergenic L3|LINE|CR1 -367378 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 365-22 chr1 164902944 164903229 + 2 NA Intergenic L2c|LINE|L2 -128445 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 249-175 chr19 35836358 35836525 + 2 NA intron (NM_004646, intron 22 of 28) intron (NM_004646, intron 22 of 28) 15552 NM_004646 4868 Hs.122186 NM_004646 ENSG00000161270 NPHS1 CNF|NPHN|nephrin NPHS1 adhesion molecule, nephrin protein-coding 476-195 chr4 55122157 55122494 + 2 NA intron (NM_002253, intron 1 of 29) intron (NM_002253, intron 1 of 29) 3270 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 531-83 chr16 86001661 86002140 + 2 NA Intergenic Intergenic 83553 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 305-438 chr5 80600459 80600647 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 21971 NR_125754 103689917 Hs.740035 NR_125754 ENSG00000251221 LINC01337 TCONS_00009713 long intergenic non-protein coding RNA 1337 ncRNA 113-7 chr10 90410089 90410156 + 2 NA intron (NR_110657, intron 3 of 6) L1MDa|LINE|L1 130683 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 122-12 chr12 79448041 79448113 + 2 NA intron (NM_001291901, intron 9 of 9) intron (NM_001291901, intron 9 of 9) 28820 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 318-227 chr19 12384433 12384667 + 2 NA Intergenic MER68|LTR|ERVL 16430 NM_001322497 90576 Hs.546637 NM_203381 ENSG00000196466 ZNF799 HIT-40|ZNF842 zinc finger protein 799 protein-coding 329-108 chr12 2571707 2572010 + 2 NA intron (NM_199460, intron 13 of 49).2 intron (NM_199460, intron 13 of 49).2 100362 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 353-136 chr14 42829763 42829968 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 1223009 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 379-232 chr4 38119366 38119714 + 2 NA promoter-TSS (NM_001253915) promoter-TSS (NM_001253915) -414 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 358-218 chr2 79558503 79558736 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 35436 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 431-141 chr2 113155382 113155697 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -18432 NM_012455 23550 Hs.516306 NM_012455 ENSG00000125637 PSD4 EFA6B|TIC pleckstrin and Sec7 domain containing 4 protein-coding 298-146 chr15 84694519 84694752 + 2 NA intron (NM_014300, intron 1 of 5) intron (NM_014300, intron 1 of 5) 21504 NM_014300 23478 Hs.9534 NM_014300 ENSG00000140612 SEC11A 1810012E07Rik|SEC11L1|SPC18|SPCS4A|sid2895 SEC11 homolog A, signal peptidase complex subunit protein-coding 209-309 chr7 151530521 151530672 + 2 NA Intergenic L1MEf|LINE|L1 -10701 NM_005614 6009 Hs.283521 NM_005614 ENSG00000106615 RHEB RHEB2 Ras homolog, mTORC1 binding protein-coding 303-11 chr1 104146165 104146410 + 2 NA Intergenic Intergenic 73264 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 375-271 chr3 143346131 143346453 + 2 NA intron (NR_048544, intron 3 of 3) intron (NR_048544, intron 3 of 3) 4046 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 276-115 chr12 65426718 65426928 + 2 NA intron (NM_001031679, intron 5 of 6) L1MA8|LINE|L1 130488 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 329-35 chr1 218668199 218668495 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 158252 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 454-348 chrX 5609514 5609838 + 2 NA Intergenic Intergenic -616682 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 380-348 chr6 135209510 135209791 + 2 NA intron (NR_134962, intron 14 of 14) intron (NR_134962, intron 14 of 14) 28342 NR_134958 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 281-282 chr3 31558827 31559059 + 2 NA intron (NM_178862, intron 1 of 15) L1MA4A|LINE|L1 26018 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 429-267 chr7 4947974 4948292 + 2 NA intron (NR_072989, intron 1 of 8) MSTA|LTR|ERVL-MaLR 11054 NM_001100600 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 438-111 chr2 29624980 29625239 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -149732 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 271-378 chr6 61874171 61874352 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 300131 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 479-98 chr2 19702257 19702572 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -166440 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 434-3 chr1 33849563 33849833 + 2 NA intron (NM_052896, intron 5 of 69) AluJo|SINE|Alu -10777 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 386-264 chr4 69434538 69434799 + 2 NA Intergenic L1M4b|LINE|L1 61237 NM_001297615 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 588-4 chr1 60308321 60308846 + 2 NA Intergenic L1MEg|LINE|L1 -234813 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 425-298 chr8 54971802 54972157 + 2 NA Intergenic Intergenic -130049 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 457-27 chr10 41891622 41891992 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 476238 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 138-33 chr17 80306905 80307026 + 2 NA intron (NM_020954, intron 12 of 16) intron (NM_020954, intron 12 of 16) 46113 NM_001256071 57674 Hs.195642 NM_020914 ENSG00000173821 RNF213 ALO17|C17orf27|KIAA1618|MYMY2|MYSTR|NET57 ring finger protein 213 protein-coding 344-206 chr19 27716008 27716260 + 2 NA Intergenic ALR/Alpha|Satellite|centr -77297 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 381-321 chr5 155945742 155945993 + 2 NA Intergenic L2b|LINE|L2 -380890 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 510-153 chr2 129803951 129804343 + 2 NA Intergenic L1ME3G|LINE|L1 73344 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 545-62 chr13 52764112 52764627 + 2 NA Intergenic Intergenic -24549 NM_001011705 11061 Hs.421391 NM_007015 ENSG00000136110 CNMD BRICD3|CHM-I|CHM1|LECT1|MYETS1 chondromodulin protein-coding 355-280 chr20 24510052 24510283 + 2 NA intron (NM_001323606, intron 2 of 4) MSTA|LTR|ERVL-MaLR 40206 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 354-302 chr3 85087827 85088143 + 2 NA intron (NM_001167674, intron 1 of 9) L2c|LINE|L2 -25721 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 535-118 chr19 44479408 44479795 + 2 NA intron (NM_001278508, intron 2 of 3) intron (NM_001278508, intron 2 of 3) 20921 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 335-524 chr8 29210031 29210357 + 2 NA intron (NM_015254, intron 2 of 39) intron (NM_015254, intron 2 of 39) 52876 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 266-2 chr1 5211238 5211473 + 2 NA Intergenic L1MEb|LINE|L1 556746 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 417-251 chr6 163891625 163891942 + 2 NA Intergenic Intergenic -220299 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 228-98 chr14 63009264 63009432 + 2 NA intron (NM_139318, intron 2 of 10) intron (NM_139318, intron 2 of 10) 36110 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 266-388 chr7 19409068 19409274 + 2 NA Intergenic Intergenic -263750 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 330-560 chr9 118255376 118255681 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -424143 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 261-410 chr9 79420569 79420767 + 2 NA Intergenic L1MA5|LINE|L1 -151105 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 369-296 chr4 91258978 91259259 + 2 NA intron (NM_001145065, intron 10 of 10) A-rich|Low_complexity|Low_complexity 1018184 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 434-280 chr8 63636787 63637172 + 2 NA Intergenic AluJb|SINE|Alu -132451 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 287-140 chr14 85027757 85028020 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -244044 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 286-390 chr6 66220305 66220464 + 2 NA Intergenic L1ME3C|LINE|L1 432505 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 541-67 chr14 85880320 85880763 + 2 NA Intergenic Intergenic -54137 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 359-264 chr2 208535429 208535661 + 2 NA Intergenic L1PA16|LINE|L1 -7097 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 394-6 chr1 65790210 65790497 + 2 NA Intergenic L1M7|LINE|L1 -2157 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 544-199 chr6 114882919 114883455 + 2 NA Intergenic L1PA16|LINE|L1 760648 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 267-383 chr6 162520853 162521059 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -206176 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 359-65 chr10 86267879 86268073 + 2 NA intron (NM_017551, intron 2 of 15) L2c|LINE|L2 -3188 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 243-17 chr1 118362556 118362748 + 2 NA Intergenic Intergenic -177424 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 223-151 chr2 56946652 56946850 + 2 NA Intergenic Intergenic -760981 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 167-97 chr5 113629028 113629164 + 2 NA Intergenic L2a|LINE|L2 115402 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 381-148 chr18 9045765 9046094 + 2 NA Intergenic AluJb|SINE|Alu -56770 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 394-119 chr15 91623984 91624191 + 2 NA Intergenic Intergenic 160748 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 244-46 chr11 23881054 23881214 + 2 NA Intergenic Intergenic -461944 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 530-177 chr4 62725960 62726315 + 2 NA Intergenic Intergenic -564372 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 366-2 chr1 13971161 13971367 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 221849 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 301-481 chr9 65074145 65074323 + 2 NA Intergenic ALR/Alpha|Satellite|centr -68824 NR_160671 105379443 NR_160670 LOC105379443 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like pseudogene pseudo 282-31 chr1 237443833 237444092 + 2 NA intron (NM_001035, intron 13 of 104) intron (NM_001035, intron 13 of 104) -27157 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 654-12 chr10 14121328 14121868 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 47314 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 148-88 chr7 36968659 36968762 + 2 NA intron (NM_001206480, intron 16 of 21) L1ME4a|LINE|L1 16402 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 347-369 chr5 6625983 6626237 + 2 NA intron (NM_001193455, intron 2 of 17) Charlie15b|DNA|hAT-Charlie 6934 NM_001193455 54888 Hs.481526 NM_017755 ENSG00000037474 NSUN2 MISU|MRT5|SAKI|TRM4 NOP2/Sun RNA methyltransferase 2 protein-coding 547-168 chr4 116771187 116771655 + 2 NA Intergenic Intergenic 314155 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 391-147 chr18 40595422 40595706 + 2 NA Intergenic Ricksha|DNA|MULE-MuDR 529278 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 211-252 chr6 560386 560540 + 2 NA intron (NM_018303, intron 17 of 27) intron (NM_018303, intron 17 of 27) 96501 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 220-332 chr6 161520564 161520740 + 2 NA intron (NM_004562, intron 9 of 11) L3b|LINE|CR1 49675 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 215-216 chr4 32429028 32429196 + 2 NA Intergenic Intergenic 78074 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 314-404 chr4 11895656 11895949 + 2 NA Intergenic Intergenic 112624 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 213-40 chr10 57429237 57429381 + 2 NA Intergenic Intergenic -124750 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 267-194 chr2 106062722 106062904 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -2875 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 342-451 chr6 48818522 48818761 + 2 NA Intergenic Intergenic 644612 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 337-39 chr1 237799477 237799653 + 2 NA intron (NM_001035, intron 97 of 104) intron (NM_001035, intron 97 of 104) -62610 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 344-314 chr3 79234032 79234260 + 2 NA intron (NM_002941, intron 2 of 30) L1PA16|LINE|L1 -177581 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 207-304 chr8 129446513 129446682 + 2 NA intron (NR_130920, intron 1 of 3) MER5A1|DNA|hAT-Charlie 37545 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 187-122 chr3 178690798 178690925 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 132011 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 458-14 chr1 236736665 236736949 + 2 NA intron (NM_001278344, intron 10 of 22) intron (NM_001278344, intron 10 of 22) 50308 NM_001278343 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 516-207 chr5 59392558 59393005 + 2 NA intron (NM_001165899, intron 3 of 16) MER102a|DNA|hAT-Charlie -35811 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 203-226 chr8 41368883 41369009 + 2 NA Intergenic L1M6|LINE|L1 -57709 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 306-205 chr18 50023448 50023667 + 2 NA intron (NM_001080467, intron 4 of 39) L3|LINE|CR1 103006 NR_036204 100422865 NR_036204 ENSG00000283343 MIR4320 - microRNA 4320 ncRNA 346-385 chr5 40501596 40501927 + 2 NA Intergenic L2|LINE|L2 -178154 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 327-78 chr11 28624644 28624936 + 2 NA Intergenic AluY|SINE|Alu -147242 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 332-38 chr1 213877014 213877279 + 2 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -47603 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 351-288 chr3 17910011 17910249 + 2 NA Intergenic L2b|LINE|L2 -52422 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 392-23 chr10 25260985 25261271 + 2 NA intron (NM_020752, intron 2 of 10) MER5B|DNA|hAT-Charlie -84852 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 749-28 chr14 27937915 27938551 + 2 NA Intergenic L1M5|LINE|L1 -265012 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 382-158 chr18 77683522 77683785 + 2 NA Intergenic L1M5|LINE|L1 310074 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 348-328 chr3 155541254 155541495 + 2 NA intron (NM_001349252, intron 10 of 24) L1PB1|LINE|L1 55571 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 302-243 chr2 214588167 214588373 + 2 NA Intergenic Intergenic 78088 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 283-95 chr12 19752531 19752708 + 2 NA Intergenic L2a|LINE|L2 -262066 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 326-177 chr15 81929838 81930015 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 116092 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 503-294 chr8 131425527 131425934 + 2 NA Intergenic Intergenic -384821 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 531-20 chr10 33167687 33168045 + 2 NA Intergenic HAL1b|LINE|L1 -51059 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 300-420 chr7 38992512 38992700 + 2 NA intron (NR_138047, intron 3 of 6) intron (NR_138047, intron 3 of 6) 14697 NM_007252 11281 Hs.137106 NM_007252 ENSG00000106536 POU6F2 RPF-1|WT5|WTSL POU class 6 homeobox 2 protein-coding 423-116 chr19 31386024 31386347 + 2 NA Intergenic Intergenic -36749 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 322-79 chr11 10213354 10213541 + 2 NA intron (NM_030962, intron 1 of 39) ERVL-E-int|LTR|ERVL 80760 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 640-26 chr12 101490256 101490693 + 2 NA Intergenic Intergenic 15138 NM_152323 121599 Hs.577097 NM_152323 ENSG00000166211 SPIC SPI-C Spi-C transcription factor protein-coding 556-11 chr1 240439255 240439623 + 2 NA intron (NM_020066, intron 16 of 17) intron (NM_020066, intron 16 of 17) 172716 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 678-111 chr8 144952012 144952517 + 2 NA Intergenic L1PB1|LINE|L1 -1384 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 321-134 chr12 54874085 54874314 + 2 NA Intergenic L1M3|LINE|L1 19683 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 399-18 chr1 199201432 199201667 + 2 NA intron (NR_147896, intron 3 of 3) intron (NR_147896, intron 3 of 3) 52951 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 603-121 chr4 69972384 69972954 + 2 NA Intergenic L1PA15|LINE|L1 -11658 NM_001891 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 371-383 chr8 85399435 85399790 + 2 NA Intergenic Intergenic -21499 NM_001738 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 271-82 chr11 127329744 127329955 + 2 NA intron (NR_120580, intron 1 of 2) Charlie14a|DNA|hAT-Charlie 58779 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 273-407 chr6 165079823 165080009 + 2 NA Intergenic L1MC4|LINE|L1 229689 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 498-53 chr11 86908005 86908385 + 2 NA intron (NR_120592, intron 2 of 2) L1MB1|LINE|L1 47200 NM_012193 8322 Hs.591968 NM_012193 ENSG00000174804 FZD4 CD344|EVR1|FEVR|FZD4S|Fz-4|Fz4|FzE4|GPCR|hFz4 frizzled class receptor 4 protein-coding 302-404 chr7 22058874 22059103 + 2 NA Intergenic Intergenic -113089 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 405-218 chr4 31600649 31600932 + 2 NA Intergenic (ATATATT)n|Simple_repeat|Simple_repeat 94246 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 419-107 chr16 79116053 79116299 + 2 NA intron (NM_001291997, intron 7 of 7) Tigger1|DNA|TcMar-Tigger 484561 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 326-502 chr7 62988233 62988406 + 2 NA Intergenic ALR/Alpha|Satellite|centr 315737 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 223-76 chr13 85702131 85702348 + 2 NA Intergenic Intergenic 97180 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 254-366 chr7 7961598 7961793 + 2 NA intron (NR_110018, intron 1 of 4) L2a|LINE|L2 7057 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 364-136 chr14 86765537 86765817 + 2 NA Intergenic Intergenic -140101 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 181-113 chr4 144162257 144162432 + 2 NA Intergenic L1PREC2|LINE|L1 -21626 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 371-224 chr20 56956340 56956614 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -257219 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 126-13 chr11 105802159 105802239 + 2 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 191493 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 364-44 chr10 17247340 17247567 + 2 NA Intergenic MER61E|LTR|ERV1 -17468 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 696-54 chr18 47614053 47614713 + 2 NA Intergenic HERV16-int|LTR|ERVL 233887 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 190-60 chr15 27607907 27608089 + 2 NA Intergenic Intergenic -446679 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 253-410 chr8 114328876 114329087 + 2 NA Intergenic Intergenic -892042 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 315-473 chr8 66317195 66317419 + 2 NA Intergenic L1MD1|LINE|L1 111670 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 674-7 chr1 198840211 198840755 + 2 NA intron (NR_040073, intron 2 of 2) AluSq2|SINE|Alu 18499 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 166-104 chr6 38827371 38827462 + 2 NA intron (NM_001371, intron 28 of 91) Zaphod3|DNA|hAT-Tip100 112105 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 536-68 chr14 23268754 23269139 + 2 NA exon (NM_001282322, exon 12 of 15) exon (NM_001282322, exon 12 of 15) 17186 NM_020834 57594 Hs.632332 NM_020834 ENSG00000215271 HOMEZ KIAA1443 homeobox and leucine zipper encoding protein-coding 547-79 chr16 82124325 82124811 + 2 NA Intergenic L1MA3|LINE|L1 45656 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 390-126 chr16 27858583 27858919 + 2 NA intron (NM_001323901, intron 2 of 5) AluJr|SINE|Alu 29406 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 543-252 chr8 125525806 125526183 + 2 NA Intergenic HERV16-int|LTR|ERVL 93785 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 337-46 chr10 42849544 42849850 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -21824 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 293-488 chrX 81023882 81024131 + 2 NA Intergenic L1PA15|LINE|L1 177907 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 639-62 chr2 106709739 106710215 + 2 NA Intergenic Intergenic 176051 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 268-42 chr10 38999701 38999961 + 2 NA Intergenic ALR/Alpha|Satellite|centr 303235 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 221-260 chr6 15893524 15893678 + 2 NA Intergenic Intergenic -230543 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 229-249 chr3 76001276 76001422 + 2 NA Intergenic L1MEd|LINE|L1 -215800 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 423-189 chr4 31415642 31415977 + 2 NA Intergenic Intergenic -90735 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 488-98 chr16 52771506 52771912 + 2 NA Intergenic Intergenic -164734 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 479-57 chr14 53385874 53386203 + 2 NA Intergenic MIRb|SINE|MIR 232684 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 286-452 chr8 86008889 86009145 + 2 NA Intergenic Intergenic 60651 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 183-114 chr5 15246095 15246232 + 2 NA intron (NR_109944, intron 1 of 2) HAL1b|LINE|L1 20397 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 114-45 chr4 56863784 56863844 + 2 NA Intergenic Intergenic -41945 NM_021114 6691 Hs.98243 NM_021114 ENSG00000128040 SPINK2 HUSI-II|SPGF29 serine peptidase inhibitor, Kazal type 2 protein-coding 173-38 chr14 83201485 83201641 + 2 NA Intergenic Intergenic 558931 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 409-313 chr9 112085269 112085499 + 2 NA intron (NM_022486, intron 10 of 16) MIR|SINE|MIR 89913 NM_001282643 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 442-211 chr4 54159078 54159482 + 2 NA Intergenic L1MEg|LINE|L1 59117 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 330-386 chr4 101860959 101861207 + 2 NA intron (NM_017935, intron 3 of 16) intron (NM_017935, intron 3 of 16) 47241 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 538-219 chr7 7434655 7434995 + 2 NA intron (NM_001037763, intron 23 of 34) intron (NM_001037763, intron 23 of 34) 101048 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 389-63 chr11 81703001 81703226 + 2 NA Intergenic L1MCb|LINE|L1 187723 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 303-46 chr10 75309583 75309747 + 2 NA intron (NR_038226, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 13282 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 408-77 chr12 28947261 28947508 + 2 NA Intergenic Intergenic -201894 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 383-356 chr7 42498366 42498648 + 2 NA Intergenic L1MC3|LINE|L1 207940 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 231-32 chr10 32504676 32504859 + 2 NA intron (NM_145023, intron 10 of 17) L1M3|LINE|L1 58627 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 326-173 chr15 69969517 69969740 + 2 NA Intergenic Intergenic 109840 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 351-118 chr14 45008460 45008770 + 2 NA intron (NR_131765, intron 5 of 19) L2b|LINE|L2 46425 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 250-96 chr12 91088873 91089106 + 2 NA Intergenic L1PA11|LINE|L1 22505 NM_002345 4060 Hs.406475 NM_002345 ENSG00000139329 LUM LDC|SLRR2D lumican protein-coding 308-216 chr2 19159666 19159929 + 2 NA Intergenic LTR91|LTR|ERVL -132826 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 224-224 chr4 72857641 72857833 + 2 NA Intergenic Intergenic 211979 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 178-132 chr7 29264808 29264959 + 2 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -55913 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 363-282 chr3 50700468 50700693 + 2 NA intron (NM_004947, intron 1 of 52) L1MA4|LINE|L1 25500 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 474-259 chr7 13681712 13682005 + 2 NA Intergenic L1MC1|LINE|L1 304656 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 355-307 chr22 47271493 47271699 + 2 NA Intergenic AluJr|SINE|Alu -73975 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 314-269 chr2 23736492 23736669 + 2 NA Intergenic L1PA4|LINE|L1 190543 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 223-285 chr5 109130082 109130215 + 2 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 196221 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 147-29 chr16 5964834 5964933 + 2 NA Intergenic L1MA9|LINE|L1 -54141 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 413-165 chr20 22143353 22143596 + 2 NA Intergenic Intergenic 89384 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 553-103 chr2 19327478 19327823 + 2 NA Intergenic Intergenic -20779 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 256-348 chr5 164761346 164761514 + 2 NA Intergenic Intergenic 291151 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 258-51 chr10 53334698 53334923 + 2 NA Intergenic Intergenic -563110 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 363-2 chr1 29863088 29863326 + 2 NA Intergenic Intergenic 174405 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 491-60 chr13 80603435 80603918 + 2 NA Intergenic Intergenic -262550 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 440-182 chr4 72230402 72230812 + 2 NA Intergenic L2a|LINE|L2 191475 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 216-108 chr15 24988218 24988390 + 2 NA TTS (NR_022008) TTS (NR_022008) 1379 NR_001292 338427 NR_001292 ENSG00000239014 SNORD108 HBII-437 small nucleolar RNA, C/D box 108 snoRNA 229-28 chr10 43875976 43876197 + 2 NA intron (NR_038268, intron 4 of 4) intron (NR_038268, intron 4 of 4) 16675 NR_038268 100506835 Hs.462615 NR_038268 ENSG00000226808 LINC00840 - long intergenic non-protein coding RNA 840 ncRNA 222-291 chr5 62069224 62069396 + 2 NA Intergenic L1MC4|LINE|L1 -236852 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 261-34 chr10 46242931 46243110 + 2 NA intron (NR_103828, intron 2 of 2) L1M2|LINE|L1 26588 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 221-259 chr6 1626317 1626483 + 2 NA intron (NM_001253846, intron 9 of 10) intron (NM_001253846, intron 9 of 10) 16485 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 225-96 chr14 82512518 82512680 + 2 NA Intergenic Intergenic -130033 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 541-50 chr12 78741488 78741916 + 2 NA Intergenic Intergenic -122280 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 262-432 chr8 92601957 92602128 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 53452 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 280-325 chr5 84602255 84602504 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -217499 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 324-386 chr4 57180663 57180953 + 2 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -70423 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 776-33 chr3 1881351 1881995 + 2 NA Intergenic L1MC4|LINE|L1 -217130 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 330-352 chr3 99414046 99414371 + 2 NA Intergenic Intergenic -224386 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 258-215 chr2 220881980 220882138 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 690245 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 378-322 chr4 148918946 148919198 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 23306 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 278-265 chr3 28235129 28235361 + 2 NA Intergenic L1ME3|LINE|L1 -6374 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 229-323 chr5 153401369 153401543 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -89068 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 288-366 chr6 53145584 53145864 + 2 NA 5' UTR (NM_003643, exon 2 of 6) 5' UTR (NM_003643, exon 2 of 6) 3117 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 276-217 chr2 19106840 19107032 + 2 NA Intergenic Intergenic -79965 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 284-188 chr2 22001391 22001560 + 2 NA Intergenic Intergenic -290823 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 210-276 chr7 114163623 114163802 + 2 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 77385 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 354-359 chr5 9227890 9228122 + 2 NA intron (NM_003966, intron 6 of 22) intron (NM_003966, intron 6 of 22) -174111 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 307-352 chr4 110763702 110763942 + 2 NA Intergenic Intergenic 96825 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 541-61 chr14 30810046 30810558 + 2 NA Intergenic Intergenic -64233 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 772-50 chr8 21820259 21820773 + 2 NA Intergenic Intergenic -31641 NM_001165038 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 239-156 chr19 29569905 29570084 + 2 NA Intergenic AluSg|SINE|Alu -36289 NM_006627 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 362-263 chr3 2433231 2433448 + 2 NA intron (NM_175607, intron 3 of 24) L1M2|LINE|L1 194510 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 367-362 chr5 85088400 85088599 + 2 NA Intergenic Intergenic -703619 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 285-62 chr11 60539560 60539723 + 2 NA intron (NM_001278320, intron 4 of 4) L1M4a2|LINE|L1 24249 NM_001278320 503497 Hs.523704 NM_001012417 ENSG00000204979 MS4A13 - membrane spanning 4-domains A13 protein-coding 398-290 chr6 40594419 40594712 + 2 NA Intergenic Intergenic -7201 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 418-217 chr5 62984801 62985157 + 2 NA Intergenic L1MC1|LINE|L1 406160 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 560-98 chr20 41927092 41927498 + 2 NA Intergenic Intergenic -308918 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 418-73 chr14 65977502 65977748 + 2 NA Intergenic Intergenic 506523 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 202-35 chr10 99092642 99092834 + 2 NA intron (NM_021828, intron 3 of 11) MIRb|SINE|MIR 143137 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 307-80 chr11 23270970 23271250 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 148080 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 631-111 chr6 44582654 44583163 + 2 NA Intergenic L1MEd|LINE|L1 -31027 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 268-19 chr1 181364405 181364579 + 2 NA Intergenic Intergenic -119025 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 251-431 chrX 67464184 67464347 + 2 NA Intergenic L1MC|LINE|L1 -79756 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 838-30 chr6 54097285 54097801 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -13900 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 245-338 chr8 23603249 23603398 + 2 NA Intergenic L2|LINE|L2 74367 NM_001317814 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 581-86 chr2 182206095 182206580 + 2 NA intron (NM_005019, intron 7 of 14) L1MC1|LINE|L1 35726 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 250-26 chr1 199838946 199839103 + 2 NA Intergenic L1PA13|LINE|L1 -188686 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 386-154 chr19 56425432 56425809 + 2 NA TTS (NM_001159860) TTS (NM_001159860) 21288 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 263-337 chr5 143649004 143649201 + 2 NA Intergenic Intergenic -30758 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 393-325 chr7 40412146 40412503 + 2 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 277348 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 378-165 chr16 75899888 75900199 + 2 NA Intergenic L1MC4|LINE|L1 -173553 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 233-106 chr15 60982095 60982241 + 2 NA intron (NM_134261, intron 1 of 10) L1MB7|LINE|L1 247134 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 376-333 chr5 124124638 124124950 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 313726 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 334-328 chr22 39196077 39196322 + 2 NA Intergenic L1MD1|LINE|L1 -43519 NM_001346743 23492 Hs.356416 NM_175709 ENSG00000100307 CBX7 - chromobox 7 protein-coding 450-175 chr21 25151349 25151649 + 2 NA Intergenic Intergenic 280202 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 320-17 chr1 91354929 91355215 + 2 NA intron (NM_001017975, intron 13 of 38) L1M2|LINE|L1 49765 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 314-580 chr8 113214787 113214949 + 2 NA intron (NM_001363185, intron 3 of 66) intron (NM_001363185, intron 3 of 66) 162284 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 332-328 chr3 72206288 72206596 + 2 NA Intergenic Intergenic 55185 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 229-279 chr4 95970488 95970702 + 2 NA Intergenic Intergenic 130502 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 355-192 chr17 15061706 15061915 + 2 NA Intergenic L1MD2|LINE|L1 30835 NR_033371 94150 Hs.147654 NR_033371 ENSG00000259944 CDRT7 LINC00025|NCRNA00025 CMT1A duplicated region transcript 7 ncRNA 130-66 chr5 7206820 7206931 + 2 NA Intergenic Intergenic 62479 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 345-313 chr20 60646614 60646841 + 2 NA Intergenic Intergenic 82165 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 410-36 chr10 60396515 60396878 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -6821 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 428-313 chr9 15614819 15615033 + 2 NA intron (NM_001355547, intron 5 of 24) L1M5|LINE|L1 50948 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 695-79 chr5 26059079 26059562 + 2 NA Intergenic Intergenic 868367 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 259-300 chr4 161238646 161238871 + 2 NA Intergenic Intergenic -783975 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 383-31 chr10 36488935 36489145 + 2 NA Intergenic Intergenic -636817 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 698-47 chr20 42078410 42078856 + 2 NA 3' UTR (NM_007050, exon 31 of 31) 3' UTR (NM_007050, exon 31 of 31) -460256 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 382-197 chr2 76064271 76064621 + 2 NA Intergenic AluJo|SINE|Alu -353531 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 294-43 chr10 64839234 64839515 + 2 NA Intergenic AluSx1|SINE|Alu 13846 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 544-188 chr5 140793529 140793934 + 2 NA intron (NM_018900, intron 1 of 3) intron (NM_018900, intron 1 of 3) -1121 NM_031496 56146 Hs.199343 NM_018905 ENSG00000204969 PCDHA2 PCDH-ALPHA2 protocadherin alpha 2 protein-coding 263-167 chr18 34448698 34448860 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -44511 NM_032975 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 320-554 chr8 95400661 95400973 + 2 NA intron (NR_038209, intron 2 of 3) intron (NR_038209, intron 2 of 3) -131616 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 497-41 chr11 54913427 54913746 + 2 NA Intergenic ALR/Alpha|Satellite|centr 206754 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 240-305 chr3 187063976 187064175 + 2 NA intron (NM_173216, intron 5 of 7) intron (NM_173216, intron 5 of 7) 25357 NM_001353916 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 190-133 chr4 53273488 53273604 + 2 NA intron (NM_152540, intron 4 of 8) intron (NM_152540, intron 4 of 8) 92515 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 301-95 chr12 63258058 63258320 + 2 NA Intergenic Intergenic -105379 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 322-357 chr3 172013414 172013675 + 2 NA Intergenic AluSx1|SINE|Alu -26034 NM_022763 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 518-181 chr3 101610367 101610759 + 2 NA Intergenic AluSc8|SINE|Alu 36383 NM_020357 57092 Hs.732633 NM_020357 ENSG00000081154 PCNP - PEST proteolytic signal containing nuclear protein protein-coding 363-79 chr11 66473203 66473491 + 2 NA TTS (NR_120586) TTS (NR_120586) 6442 NM_145065 246330 Hs.656875 NM_145065 ENSG00000174516 PELI3 - pellino E3 ubiquitin protein ligase family member 3 protein-coding 246-66 chr11 42966172 42966354 + 2 NA Intergenic Intergenic 303106 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 205-184 chr3 89060237 89060348 + 2 NA Intergenic Intergenic -47329 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 263-184 chr2 7145054 7145252 + 2 NA Intergenic Intergenic -67273 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 464-103 chr18 79891324 79891701 + 2 NA intron (NM_012283, intron 1 of 1) AluJb|SINE|Alu 27844 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 340-171 chr15 61579780 61580084 + 2 NA Intergenic L1MD3|LINE|L1 -149986 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 367-214 chr2 114110784 114111082 + 2 NA Intergenic L1M|LINE|L1 -130949 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 222-10 chr1 113296210 113296427 + 2 NA Intergenic L1MA9|LINE|L1 -90065 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 239-288 chr4 123629386 123629614 + 2 NA Intergenic Intergenic -20491 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 403-227 chr4 95297023 95297243 + 2 NA intron (NM_003728, intron 3 of 15) LTR16|LTR|ERVL 205642 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 294-338 chr4 75178105 75178253 + 2 NA Intergenic Intergenic -93471 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 345-150 chr14 48812548 48812795 + 2 NA Intergenic Intergenic 773709 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 330-362 chr3 144790744 144791036 + 2 NA Intergenic L1PA8A|LINE|L1 817809 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 532-119 chr2 78566638 78567015 + 2 NA TTS (NR_136311) TTS (NR_136311) 21295 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 264-107 chr13 39447388 39447597 + 2 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 155701 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 349-410 chr5 33132502 33132764 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -97102 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 380-127 chr14 89823568 89823883 + 2 NA intron (NM_001284269, intron 5 of 5) L1MEf|LINE|L1 130811 NM_001284268 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 150-107 chr8 110209935 110210055 + 2 NA Intergenic Intergenic -234224 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 253-215 chr20 1682534 1682752 + 2 NA Intergenic L1MA8|LINE|L1 -24864 NM_080816 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 285-154 chr17 65831886 65832090 + 2 NA intron (NM_001353129, intron 21 of 26) L1PA14|LINE|L1 -5445 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 384-239 chr3 151231749 151232021 + 2 NA intron (NM_014879, intron 1 of 2) L1MC4|LINE|L1 17106 NM_001081455 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 491-92 chr17 68738991 68739406 + 2 NA Intergenic L1ME3|LINE|L1 111044 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 299-343 chr4 161760890 161761046 + 2 NA intron (NM_001128428, intron 5 of 14) intron (NM_001128428, intron 5 of 14) -261765 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 267-152 chr18 9527191 9527450 + 2 NA intron (NM_006788, intron 6 of 9) intron (NM_006788, intron 6 of 9) 51807 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 370-350 chr4 81520765 81520950 + 2 NA Intergenic Intergenic -48950 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 229-114 chr14 58514885 58515051 + 2 NA 3' UTR (NM_001364700, exon 30 of 30) 3' UTR (NM_001364700, exon 30 of 30) 75287 NM_001244193 9786 Hs.232532 NM_014749 ENSG00000100578 KIAA0586 JBTS23|SRTD14|Talpid3 KIAA0586 protein-coding 348-490 chr7 37194791 37195051 + 2 NA intron (NM_001206480, intron 13 of 21) intron (NM_001206480, intron 13 of 21) 158747 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 260-458 chr9 87398682 87398882 + 2 NA Intergenic LTR9|LTR|ERV1 -98446 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 611-18 chr11 7396769 7397161 + 2 NA intron (NM_175733, intron 3 of 6) L1MEc|LINE|L1 68870 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 158-48 chr2 8097782 8097896 + 2 NA intron (NR_034135, intron 7 of 8) L1MB7|LINE|L1 -121025 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 236-152 chr18 78796610 78796764 + 2 NA Intergenic Intergenic -183588 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 210-72 chr14 51236844 51237011 + 2 NA Intergenic L1M4b|LINE|L1 -3320 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 194-116 chr3 21249091 21249211 + 2 NA Intergenic L1ME4b|LINE|L1 -156575 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 163-34 chr12 59319395 59319508 + 2 NA Intergenic LTR81A|LTR|Gypsy -276578 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 225-398 chr9 103625895 103626068 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -300948 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 225-107 chr15 79582456 79582620 + 2 NA Intergenic L1MB2|LINE|L1 150022 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 333-221 chr2 10103638 10103804 + 2 NA Intergenic Intergenic -18847 NM_001165931 6241 Hs.226390 NM_001034 ENSG00000171848 RRM2 R2|RR2|RR2M ribonucleotide reductase regulatory subunit M2 protein-coding 554-49 chr11 90481240 90481643 + 2 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 74416 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 190-192 chr9 9265183 9265323 + 2 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 407235 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 341-330 chr3 54909806 54909976 + 2 NA intron (NM_018398, intron 27 of 37) MER30|DNA|hAT-Charlie -8636 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 331-406 chr5 4930868 4931176 + 2 NA Intergenic MER65A|LTR|ERV1 -103337 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 329-508 chr6 135010917 135011204 + 2 NA intron (NM_001363686, intron 4 of 18) L1M3|LINE|L1 -31628 NR_037435 100500880 NR_037435 ENSG00000283409 MIR3662 mir-3662 microRNA 3662 ncRNA 336-400 chr4 40466341 40466654 + 2 NA intron (NM_001098634, intron 3 of 6) intron (NM_001098634, intron 3 of 6) 35622 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 331-157 chr14 61442781 61443098 + 2 NA intron (NM_006255, intron 2 of 13) AluJo|SINE|Alu 121496 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 376-384 chr7 84714398 84714673 + 2 NA Intergenic Intergenic 182059 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 225-267 chr5 17145822 17146037 + 2 NA intron (NR_027253, intron 2 of 2) intron (NR_027253, intron 2 of 2) 10063 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 288-440 chr8 83817909 83818125 + 2 NA Intergenic Intergenic -364770 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 423-284 chr7 153625300 153625535 + 2 NA Intergenic Intergenic -122716 NM_001364498 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 309-154 chr14 62495415 62495716 + 2 NA Intergenic L1M4c|LINE|L1 -355592 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 246-131 chr15 61279097 61279253 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -49873 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 588-95 chr3 36687245 36687800 + 2 NA Intergenic L1MC|LINE|L1 52339 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 331-201 chr17 16266096 16266381 + 2 NA intron (NM_004278, intron 2 of 6) AluSx1|SINE|Alu -15776 NR_031698 100302124 NR_031698 ENSG00000221355 MIR1288 MIRN1288|hsa-mir-1288 microRNA 1288 ncRNA 240-294 chr3 125204630 125204831 + 2 NA intron (NM_001195483, intron 1 of 12) L1MA4|LINE|L1 6669 NM_001195483 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 302-154 chr16 29747504 29747749 + 2 NA Intergenic Intergenic -1636 NM_175900 283897 Hs.331095 NM_175900 ENSG00000185905 C16orf54 - chromosome 16 open reading frame 54 protein-coding 369-252 chr21 42873729 42874041 + 2 NA intron (NM_001260476, intron 2 of 10) intron (NM_001260476, intron 2 of 10) 5390 NM_001260477 10785 Hs.248815 NM_018669 ENSG00000160193 WDR4 GAMOS6|MIGSB|TRM82|TRMT82 WD repeat domain 4 protein-coding 753-65 chr9 72192534 72193181 + 2 NA intron (NM_001351571, intron 1 of 13) AluSc|SINE|Alu 43417 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 375-136 chr14 92245991 92246196 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -76488 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 595-8 chr1 163002027 163002433 + 2 NA Intergenic L2c|LINE|L2 -66376 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 150-85 chr4 135220387 135220481 + 2 NA Intergenic Intergenic -96875 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 376-40 chr10 27595549 27595745 + 2 NA Intergenic L1ME1|LINE|L1 91343 NR_046172 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 558-133 chr3 43976514 43977047 + 2 NA Intergenic L1ME3G|LINE|L1 -137432 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 421-173 chr21 27002455 27002764 + 2 NA Intergenic Intergenic -35521 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 485-205 chr4 62843017 62843344 + 2 NA Intergenic Intergenic -681415 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 515-229 chr6 28198656 28199059 + 2 NA Intergenic Intergenic 20072 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 263-433 chr8 133324965 133325136 + 2 NA Intergenic MIR3|SINE|MIR -27746 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 263-215 chr2 125653495 125653712 + 2 NA Intergenic Intergenic 464382 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 283-120 chr13 55468310 55468561 + 2 NA Intergenic Intergenic 293981 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 358-142 chr16 26299184 26299418 + 2 NA Intergenic AluSx4|SINE|Alu 274064 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 138-83 chr7 67535718 67535826 + 2 NA Intergenic Intergenic 199796 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 352-39 chr10 33531282 33531503 + 2 NA Intergenic Intergenic -196487 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 453-175 chr4 33975062 33975357 + 2 NA intron (NR_125902, intron 2 of 4) THE1C|LTR|ERVL-MaLR 64684 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 248-139 chr16 20118699 20118874 + 2 NA Intergenic AluSc|SINE|Alu -45008 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 332-60 chr10 58910647 58910875 + 2 NA Intergenic HERV16-int|LTR|ERVL -88757 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 321-573 chr8 120967772 120967978 + 2 NA Intergenic MIRb|SINE|MIR -155829 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 406-229 chr5 53747259 53747523 + 2 NA Intergenic L1M1|LINE|L1 72291 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 202-110 chr2 16121117 16121270 + 2 NA Intergenic Intergenic 70766 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 265-388 chr8 76763687 76763902 + 2 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -80519 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 461-227 chr5 178815439 178815838 + 2 NA intron (NR_135095, intron 1 of 10) AluYj4|SINE|Alu 2797 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 367-329 chr4 91833530 91833784 + 2 NA Intergenic L1PA15-16|LINE|L1 443645 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 810-42 chr5 28607544 28608142 + 2 NA Intergenic Intergenic -319027 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 353-245 chr2 59370088 59370370 + 2 NA Intergenic Intergenic 152521 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 208-60 chr12 60891774 60891940 + 2 NA Intergenic LTR37A|LTR|ERV1 1202487 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 310-353 chr3 188093616 188093865 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -60158 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 326-213 chr18 57716215 57716535 + 2 NA intron (NM_005603, intron 2 of 27) L1M1|LINE|L1 86044 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 354-85 chr11 93369980 93370188 + 2 NA exon (NM_181645, exon 6 of 14) exon (NM_181645, exon 6 of 14) 39367 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 375-125 chr14 55934846 55935140 + 2 NA Intergenic Intergenic -138319 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 235-314 chr6 108879817 108880021 + 2 NA intron (NM_001286609, intron 4 of 16) intron (NM_001286609, intron 4 of 16) 31497 NM_032131 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 328-534 chr7 52827012 52827294 + 2 NA Intergenic Intergenic -208480 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 191-13 chr1 113519628 113519791 + 2 NA intron (NM_001142782, intron 1 of 20) MER68|LTR|ERVL 129194 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 346-55 chr10 117866225 117866539 + 2 NA Intergenic HAL1b|LINE|L1 -180439 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 331-399 chr4 162720009 162720239 + 2 NA Intergenic L1MB8|LINE|L1 373504 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 526-35 chr11 22765391 22765878 + 2 NA intron (NR_147085, intron 9 of 10) AluY|SINE|Alu 63745 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 246-209 chr2 157772442 157772634 + 2 NA intron (NM_001111067, intron 6 of 10) intron (NM_001111067, intron 6 of 10) 66092 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 246-223 chr2 225977896 225978090 + 2 NA Intergenic L2|LINE|L2 -164801 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 283-129 chr14 59958970 59959129 + 2 NA intron (NR_075071, intron 8 of 32) L1PA8|LINE|L1 39336 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 352-543 chr8 129237913 129238238 + 2 NA intron (NR_033916, intron 1 of 2) intron (NR_033916, intron 1 of 2) 3165 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 388-280 chr5 59711837 59712147 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -8289 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 297-234 chr2 153681524 153681724 + 2 NA Intergenic Intergenic -190298 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 401-119 chr16 50781003 50781354 + 2 NA intron (NM_015247, intron 10 of 19) intron (NM_015247, intron 10 of 19) -25494 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 481-110 chr16 52539065 52539461 + 2 NA intron (NM_001146188, intron 1 of 7) intron (NM_001146188, intron 1 of 7) 7880 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 138-71 chr5 93846611 93846713 + 2 NA intron (NM_032042, intron 7 of 10) intron (NM_032042, intron 7 of 10) -105062 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 232-66 chr12 818858 819059 + 2 NA intron (NM_001184985, intron 2 of 27) L1MB5|LINE|L1 66035 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 445-242 chr6 131262480 131262755 + 2 NA intron (NM_138633, intron 2 of 2) intron (NM_138633, intron 2 of 2) 12213 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 334-166 chr14 104910955 104911158 + 2 NA Intergenic MER4D1|LTR|ERV1 -13823 NM_001308174 122618 Hs.407101 NM_138790 ENSG00000166428 PLD4 C14orf175 phospholipase D family member 4 protein-coding 324-194 chr16 3804154 3804359 + 2 NA intron (NM_004380, intron 3 of 30) intron (NM_004380, intron 3 of 30) 75864 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 251-350 chr6 141022834 141023070 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 339138 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 190-123 chr3 74728591 74728724 + 2 NA Intergenic Intergenic -207517 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 591-50 chr16 82251891 82252363 + 2 NA Intergenic Intergenic -81903 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 242-206 chr2 213480021 213480206 + 2 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 195649 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 198-26 chr10 78684117 78684265 + 2 NA Intergenic Intergenic 383257 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 232-281 chr4 148219182 148219380 + 2 NA intron (NM_000901, intron 3 of 8) L1MB7|LINE|L1 223133 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 140-23 chr13 80500328 80500404 + 2 NA Intergenic Intergenic -159240 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 254-92 chr12 131320922 131321082 + 2 NA Intergenic MER4-int|LTR|ERV1 -23030 NR_135045 107161159 Hs.730119 NR_135045 ENSG00000248703 LINC02415 - long intergenic non-protein coding RNA 2415 ncRNA 403-236 chr5 12621060 12621342 + 2 NA intron (NR_033383, intron 2 of 3) L1PB3|LINE|L1 46344 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 326-16 chr1 78029532 78029747 + 2 NA Intergenic Intergenic -15331 NM_001304725 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 598-43 chr14 53818243 53818652 + 2 NA Intergenic L1M5|LINE|L1 130037 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 390-303 chr5 125244901 125245101 + 2 NA intron (NR_109882, intron 4 of 5) L1PA15|LINE|L1 208170 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 238-179 chr2 104238391 104238542 + 2 NA Intergenic Intergenic 169866 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 171-19 chr11 29734223 29734356 + 2 NA Intergenic Intergenic 115487 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 321-439 chr4 167275486 167275693 + 2 NA Intergenic Intergenic -40999 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 484-204 chr5 25818577 25818911 + 2 NA Intergenic Intergenic 627791 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 406-197 chr3 188704406 188704671 + 2 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) 15757 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 276-471 chr9 12250818 12250998 + 2 NA Intergenic Intergenic -442477 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 643-98 chr5 118431141 118431674 + 2 NA intron (NR_104610, intron 9 of 9) Charlie25|DNA|hAT-Charlie 130710 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 186-144 chr6 131834867 131835008 + 2 NA intron (NM_006208, intron 1 of 24) intron (NM_006208, intron 1 of 24) 26917 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 195-38 chr11 82549612 82549791 + 2 NA Intergenic Intergenic -145788 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 206-261 chr8 53559505 53559676 + 2 NA Intergenic L1PREC2|LINE|L1 -35625 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 195-122 chr2 235997363 235997512 + 2 NA intron (NM_001037131, intron 13 of 17) intron (NM_001037131, intron 13 of 17) 170949 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 360-225 chr2 89822751 89822943 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -184940 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 452-225 chr5 178917224 178917602 + 2 NA intron (NM_030613, intron 4 of 4) AluSz|SINE|Alu 21500 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 322-162 chr14 86103065 86103237 + 2 NA intron (NR_110155, intron 2 of 3) Zaphod|DNA|hAT-Tip100 168473 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 385-138 chr17 74609362 74609628 + 2 NA TTS (NM_181449) TTS (NM_181449) 9655 NR_158152 101928343 Hs.93825 NR_158152 LOC101928343 - uncharacterized LOC101928343 ncRNA 291-386 chr6 72538116 72538295 + 2 NA Intergenic L1M5|LINE|L1 -83638 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 350-294 chr21 41841652 41841957 + 2 NA intron (NM_001040424, intron 6 of 23) L1M5|LINE|L1 21498 NR_104260 63977 Hs.473893 NM_022115 ENSG00000141956 PRDM15 C21orf83|PFM15|ZNF298 PR/SET domain 15 protein-coding 450-13 chr1 170463333 170463610 + 2 NA intron (NR_125958, intron 1 of 2) intron (NR_125958, intron 1 of 2) -68651 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 301-121 chr14 54781693 54781948 + 2 NA intron (NM_015589, intron 10 of 11) intron (NM_015589, intron 10 of 11) 26987 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 200-138 chr2 117378043 117378218 + 2 NA Intergenic Intergenic -436561 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 222-252 chr3 171508897 171509075 + 2 NA Intergenic Intergenic -48578 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 326-175 chr15 79270460 79270664 + 2 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) -12160 NM_001146341 390616 Hs.531231 NM_001146341 ENSG00000235711 ANKRD34C - ankyrin repeat domain 34C protein-coding 250-234 chr2 224364254 224364420 + 2 NA Intergenic Intergenic 37657 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 342-445 chr6 39582050 39582300 + 2 NA intron (NM_001289020, intron 9 of 21) intron (NM_001289020, intron 9 of 21) 143233 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 127-81 chr8 139409858 139409979 + 2 NA Intergenic L1ME3Cz|LINE|L1 293205 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 244-390 chr9 137925466 137925635 + 2 NA intron (NM_001243812, intron 6 of 45) L1MD1|LINE|L1 21510 NR_132977 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 345-148 chr14 46155905 46156198 + 2 NA intron (NR_102702, intron 1 of 3) L1PB1|LINE|L1 91892 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 324-457 chr6 45052988 45053167 + 2 NA intron (NM_001350327, intron 2 of 9) AluJo|SINE|Alu 144693 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 756-40 chr3 89430544 89431089 + 2 NA intron (NM_005233, intron 12 of 16) intron (NM_005233, intron 12 of 16) 323195 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 279-216 chr20 17905146 17905340 + 2 NA Intergenic L1ME2|LINE|L1 57703 NR_003045 692086 Hs.680747 NR_003045 ENSG00000212232 SNORD17 HBI-43 small nucleolar RNA, C/D box 17 snoRNA 465-69 chr13 28836975 28837237 + 2 NA intron (NM_001366651, intron 1 of 14) intron (NM_001366651, intron 1 of 14) 16767 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 242-243 chr3 104849790 104849964 + 2 NA Intergenic Intergenic -516836 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 378-217 chr2 30892508 30892873 + 2 NA Intergenic LTR40b|LTR|ERVL -85244 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 292-237 chr2 164198815 164198992 + 2 NA Intergenic Intergenic 369592 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 377-175 chr18 75720248 75720538 + 2 NA Intergenic (CCATCCAT)n|Simple_repeat|Simple_repeat -7990 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 310-11 chr1 105774964 105775130 + 2 NA Intergenic L1M4c|LINE|L1 -156112 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 319-402 chr5 27638547 27638832 + 2 NA Intergenic Intergenic 166397 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 251-128 chr17 27832691 27832882 + 2 NA Intergenic MER57A-int|LTR|ERV1 -32257 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 307-521 chr9 94677233 94677467 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie -37101 NM_001127628 2203 Hs.494496 NM_000507 ENSG00000165140 FBP1 FBP fructose-bisphosphatase 1 protein-coding 214-176 chr2 181434279 181434449 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -22528 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 412-86 chr14 47554604 47554994 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 120155 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 370-281 chr21 27729049 27729283 + 2 NA intron (NR_024357, intron 1 of 3) L1MEf|LINE|L1 6787 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 506-54 chr11 59953382 59953850 + 2 NA intron (NR_130719, intron 3 of 8) intron (NR_130719, intron 3 of 8) 10737 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 342-449 chr6 45680975 45681165 + 2 NA Intergenic L1MB3|LINE|L1 256527 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 288-369 chr6 63186367 63186617 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 133485 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 295-497 chr9 81974534 81974763 + 2 NA Intergenic Intergenic -14124 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 358-174 chr19 8816208 8816513 + 2 NA intron (NM_001304350, intron 2 of 4) AluJr|SINE|Alu 5703 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 513-80 chr14 83450658 83451117 + 2 NA Intergenic L1MDb|LINE|L1 808255 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 349-274 chr2 129585248 129585554 + 2 NA Intergenic L1MC1|LINE|L1 292090 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 119-23 chr17 65780826 65780905 + 2 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 45586 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 380-305 chr5 56359474 56359703 + 2 NA Intergenic Intergenic 122181 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 618-30 chr12 116989232 116989742 + 2 NA intron (NM_153348, intron 7 of 10) L1ME4b|LINE|L1 -2150 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 258 chr1 14594339 14594553 + 2 NA Intergenic Intergenic -4239 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 294-436 chr7 52373172 52373368 + 2 NA Intergenic Intergenic -662363 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 373-350 chr6 11962788 11963149 + 2 NA Intergenic L2b|LINE|L2 38276 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 497-72 chr13 112174194 112174476 + 2 NA Intergenic Intergenic -13625 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 658-60 chr19 29480808 29481278 + 2 NA intron (NR_040029, intron 1 of 9) LOR1b|LTR|ERV1 44709 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 381-86 chr12 52671860 52672062 + 2 NA Intergenic L2b|LINE|L2 8446 NM_006121 3848 Hs.80828 NM_006121 ENSG00000167768 KRT1 CK1|EHK|EHK1|EPPK|K1|KRT1A|NEPPK keratin 1 protein-coding 613-142 chr8 137080294 137080755 + 2 NA Intergenic Intergenic 333064 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 636-37 chr13 43623728 43624216 + 2 NA intron (NM_001127615, intron 1 of 16) L1MDa|LINE|L1 5505 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 700-72 chr4 63332757 63333341 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1076401 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 288-434 chr8 52806975 52807204 + 2 NA Intergenic Intergenic -92623 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 268-336 chr6 46332035 46332250 + 2 NA intron (NR_125838, intron 2 of 3) L1MC5|LINE|L1 -6250 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 305-403 chr4 114462248 114462402 + 2 NA Intergenic LTR23|LTR|ERV1 -136077 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 510-196 chr3 192419715 192420090 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -10853 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 246-241 chr21 25676792 25677032 + 2 NA intron (NR_072999, intron 1 of 9) intron (NR_072999, intron 1 of 9) 37630 NM_001270407 58494 Hs.517227 NM_021219 ENSG00000154721 JAM2 C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM junctional adhesion molecule 2 protein-coding 289-306 chr3 90687853 90688024 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1580317 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 212-65 chr11 44516844 44517002 + 2 NA Intergenic L2a|LINE|L2 -48740 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 509-28 chr10 105855407 105855794 + 2 NA Intergenic L1ME3A|LINE|L1 -35267 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 284-318 chr5 45548307 45548510 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 147972 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 286-42 chr10 55412155 55412402 + 2 NA intron (NM_001354404, intron 2 of 34) ORSL-2a|DNA|hAT-Tip100 -186764 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 591-61 chr18 62047742 62048279 + 2 NA intron (NM_176787, intron 30 of 30) L1MD1|LINE|L1 139046 NM_176787 23556 Hs.157031 NM_012327 ENSG00000197563 PIGN MCAHS|MCAHS1|MCD4|MDC4|PIG-N phosphatidylinositol glycan anchor biosynthesis class N protein-coding 335-508 chr7 62811036 62811261 + 2 NA Intergenic ALR/Alpha|Satellite|centr 492908 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 366-354 chr5 143794760 143795069 + 2 NA Intergenic Intergenic -17247 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 383-298 chr4 163197510 163197856 + 2 NA Intergenic Intergenic -30793 NM_138386 92345 Hs.129095 NM_138386 ENSG00000145414 NAF1 - nuclear assembly factor 1 ribonucleoprotein protein-coding 264-120 chr14 23863878 23864042 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -89810 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 226-106 chr15 91893663 91893834 + 2 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 39444 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 145-44 chr19 36465203 36465318 + 2 NA intron (NM_001145345, intron 4 of 4) L1MEf|LINE|L1 24175 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 313-425 chr5 42137442 42137625 + 2 NA Intergenic L1M2|LINE|L1 37812 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 231-127 chr17 55974808 55974969 + 2 NA Intergenic L2b|LINE|L2 -178587 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 186-137 chr6 50743717 50743876 + 2 NA intron (NM_172238, intron 5 of 7) intron (NM_172238, intron 5 of 7) 30252 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 133-67 chr5 123759723 123759810 + 2 NA Intergenic L1MA4|LINE|L1 214349 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 230-229 chr3 53895991 53896217 + 2 NA Intergenic Intergenic -4245 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 307-373 chr5 15298077 15298244 + 2 NA Intergenic Intergenic -31600 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 252-413 chr8 43621707 43621885 + 2 NA Intergenic ALR/Alpha|Satellite|centr 329354 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 253-195 chr2 116659480 116659644 + 2 NA Intergenic L1M1|LINE|L1 -1155129 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 235-274 chr5 16429055 16429239 + 2 NA intron (NR_104625, intron 7 of 8) L1ME4b|LINE|L1 11955 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 285-264 chr3 37479758 37479933 + 2 NA intron (NM_002207, intron 3 of 27) MIRc|SINE|MIR 27704 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 488-19 chr10 5183086 5183541 + 2 NA intron (NR_027916, intron 1 of 7) LTR25-int|LTR|ERV1 1874 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 276-99 chr12 15022860 15023064 + 2 NA Intergenic L1MD1|LINE|L1 21129 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 354-397 chr6 51932779 51933063 + 2 NA intron (NM_138694, intron 37 of 66) intron (NM_138694, intron 37 of 66) 154692 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 429-110 chr16 55091727 55092104 + 2 NA Intergenic Intergenic 160716 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 261-286 chr4 81637649 81637822 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -165828 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 350-551 chr9 10567557 10567802 + 2 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 45323 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 444-286 chr9 113554490 113554897 + 2 NA intron (NM_001276261, intron 10 of 14) L1ME4a|LINE|L1 -10261 NM_134427 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 226-314 chr6 158143069 158143289 + 2 NA non-coding (NR_073096, exon 8 of 13) non-coding (NR_073096, exon 8 of 13) 25083 NM_032861 84947 Hs.154706 NM_032861 ENSG00000122335 SERAC1 - serine active site containing 1 protein-coding 319-421 chr5 100956450 100956734 + 2 NA Intergenic L1MA1|LINE|L1 -53310 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 235-284 chr5 58468993 58469165 + 2 NA Intergenic L1MC5a|LINE|L1 -8940 NM_001252226 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 291-279 chr3 9052548 9052749 + 2 NA intron (NM_014850, intron 9 of 21) intron (NM_014850, intron 9 of 21) -89176 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 453-151 chr22 44285311 44285660 + 2 NA exon (NM_001099294, exon 4 of 5) exon (NM_001099294, exon 4 of 5) 27466 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 175-140 chr6 11579670 11579796 + 2 NA 3' UTR (NM_001100829, exon 3 of 3) 3' UTR (NM_001100829, exon 3 of 3) 41984 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 382-7 chr1 60370461 60370700 + 2 NA Intergenic Intergenic 252105 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 896-44 chrX 64764321 64764863 + 2 NA Intergenic Intergenic 211858 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 244-316 chr6 33967199 33967398 + 2 NA Intergenic L2b|LINE|L2 32753 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 219-18 chr1 173097166 173097360 + 2 NA Intergenic Intergenic -46300 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 311-125 chr13 94925064 94925254 + 2 NA intron (NR_110754, intron 3 of 4) intron (NR_110754, intron 3 of 4) -34882 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 132-87 chr8 77020882 77020989 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -19891 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 183-79 chr2 103385208 103385372 + 2 NA Intergenic L1ME1|LINE|L1 -400861 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 381 chr1 4389709 4389993 + 2 NA Intergenic Intergenic -22200 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 120-31 chr3 27868479 27868548 + 2 NA Intergenic L1MA8|LINE|L1 -34377 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 247 chr1 14395676 14395849 + 2 NA intron (NR_149058, intron 1 of 4) intron (NR_149058, intron 1 of 4) 24211 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 270-263 chr4 45893727 45893953 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 230214 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 334-325 chr22 32249627 32249936 + 2 NA intron (NM_014227, intron 3 of 14) intron (NM_014227, intron 3 of 14) 5566 NM_014227 6527 Hs.130101 NM_014227 ENSG00000100191 SLC5A4 DJ90G24.4|SAAT1|SGLT3 solute carrier family 5 member 4 protein-coding 365-58 chr10 93483780 93484040 + 2 NA Intergenic Intergenic -1576 NM_133337 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 167-100 chr5 120097972 120098108 + 2 NA Intergenic Intergenic -366238 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 380-65 chr11 38828316 38828564 + 2 NA Intergenic L1PA17|LINE|L1 179582 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 554-204 chr8 110858049 110858546 + 2 NA Intergenic L1MDa|LINE|L1 169136 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 784-13 chr11 48860122 48860571 + 2 NA Intergenic ALR/Alpha|Satellite|centr -171254 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 255-30 chr10 55841088 55841336 + 2 NA Intergenic Intergenic -213270 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 246-168 chr18 30568827 30569027 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 270017 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 204-19 chr10 3439681 3439818 + 2 NA intron (NR_155743, intron 3 of 4) intron (NR_155743, intron 3 of 4) 63089 NR_155745 101927880 NR_155743 LINC02669 - long intergenic non-protein coding RNA 2669 ncRNA 283-191 chr18 25963559 25963729 + 2 NA Intergenic Intergenic 126969 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 475-81 chr14 78315269 78315720 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -88225 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 277-279 chr3 192609362 192609571 + 2 NA intron (NM_004113, intron 2 of 5) LTR89|LTR|ERVL? 94444 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 380-304 chr5 53697382 53697606 + 2 NA Intergenic L1MA9|LINE|L1 122188 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 266-220 chr20 48010934 48011146 + 2 NA Intergenic (CACCAT)n|Simple_repeat|Simple_repeat -20923 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 418-173 chr3 178693783 178694140 + 2 NA intron (NM_001278911, intron 1 of 4) L1PA13|LINE|L1 135111 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 321-170 chr14 58988901 58989193 + 2 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 160759 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 530-34 chr10 98908928 98909323 + 2 NA intron (NM_021828, intron 3 of 11) MLT1J2|LTR|ERVL-MaLR 15443 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 276-83 chr11 64130941 64131151 + 2 NA intron (NM_014067, intron 3 of 10) intron (NM_014067, intron 3 of 10) 27156 NM_013280 23769 Hs.584876 NM_013280 ENSG00000126500 FLRT1 SPG68 fibronectin leucine rich transmembrane protein 1 protein-coding 254-351 chr6 83147854 83148029 + 2 NA intron (NM_015018, intron 26 of 38) intron (NM_015018, intron 26 of 38) 45324 NM_001199919 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 339-241 chr2 10181423 10181610 + 2 NA intron (NR_161344, intron 3 of 3) L1M5|LINE|L1 11155 NR_036222 100422929 NR_036222 ENSG00000265418 MIR4261 - microRNA 4261 ncRNA 263-289 chr4 63598002 63598260 + 2 NA Intergenic Intergenic 811319 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 371-107 chr14 63067600 63067797 + 2 NA Intergenic L1PB1|LINE|L1 -22240 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 468-207 chr3 97618144 97618485 + 2 NA intron (NM_001080448, intron 13 of 17) L1PA12|LINE|L1 -146207 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 265-45 chr10 104660737 104660970 + 2 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) 5363 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 403-143 chr19 2894707 2895064 + 2 NA Intergenic MER90a|LTR|ERV1 -6043 NM_173480 126295 Hs.591378 NM_173480 ENSG00000171970 ZNF57 ZNF424 zinc finger protein 57 protein-coding 221-16 chr1 163844921 163845100 + 2 NA Intergenic Intergenic -421819 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 429-42 chr10 101639551 101639817 + 2 NA intron (NR_136613, intron 4 of 7) intron (NR_136613, intron 4 of 7) -38187 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 368-481 chr9 78428465 78428764 + 2 NA Intergenic L1MA4|LINE|L1 131489 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 291-392 chr6 128899807 128900084 + 2 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 16804 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 316-419 chr5 3457913 3458215 + 2 NA intron (NR_147000, intron 2 of 2) intron (NR_147000, intron 2 of 2) 5248 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 347-497 chr8 53492372 53492649 + 2 NA Intergenic MER74A|LTR|ERVL 31455 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 352-303 chr22 40691731 40691944 + 2 NA Intergenic L2|LINE|L2 12659 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 266-188 chr2 108098165 108098327 + 2 NA Intergenic L1MB5|LINE|L1 -45491 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 334-77 chr10 122320328 122320525 + 2 NA intron (NM_001318189, intron 10 of 15) L1ME1|LINE|L1 49130 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 388-185 chr20 39086829 39087048 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 124594 NR_033905 60625 Hs.444520 NM_021931 ENSG00000101452 DHX35 C20orf15|DDX35|KAIA0875 DEAH-box helicase 35 protein-coding 256-103 chr13 54364714 54364896 + 2 NA Intergenic L1MDa|LINE|L1 -52757 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 331-93 chr11 76836578 76836848 + 2 NA Intergenic L2|LINE|L2 -24205 NM_001300954 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 341-247 chr2 64160215 64160486 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -15930 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 275-208 chr2 163587437 163587672 + 2 NA Intergenic Intergenic 148454 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 568-56 chr14 84409377 84409720 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -862384 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 230-230 chr3 61368857 61369029 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -117482 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 350-54 chr10 85085676 85085944 + 2 NA Intergenic L1ME4c|LINE|L1 113095 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 158-28 chr14 43099072 43099178 + 2 NA Intergenic Intergenic 1408158 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 436-36 chr10 71665632 71665960 + 2 NA intron (NM_022124, intron 13 of 67) intron (NM_022124, intron 13 of 67) 53982 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 576-12 chr1 231784523 231785070 + 2 NA intron (NM_001164547, intron 6 of 7) MIRc|SINE|MIR 33721 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 174-105 chr4 175121302 175121452 + 2 NA Intergenic L1PA16|LINE|L1 203019 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 649-112 chr8 120159673 120160193 + 2 NA intron (NM_021110, intron 3 of 47) AluSq|SINE|Alu 34831 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 148-85 chr7 11753122 11753219 + 2 NA intron (NM_015204, intron 1 of 26) MER45R|DNA|hAT-Tip100 79028 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 386-229 chr3 23269410 23269724 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 66240 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 326-112 chr11 131113463 131113661 + 2 NA Intergenic L1MA9|LINE|L1 -197075 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 342-146 chr14 72153191 72153459 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 219798 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 250-222 chr2 137100800 137101023 + 2 NA intron (NM_001316349, intron 4 of 27) intron (NM_001316349, intron 4 of 27) 335366 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 579-120 chr4 98996941 98997512 + 2 NA promoter-TSS (NR_037455) promoter-TSS (NR_037455) -161 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 660-39 chr19 44151910 44152385 + 2 NA intron (NM_006630, intron 5 of 5) L2a|LINE|L2 10593 NM_006630 10780 Hs.235992 NM_006630 ENSG00000263002 ZNF234 HZF4|ZNF269 zinc finger protein 234 protein-coding 332-298 chr21 19500280 19500509 + 2 NA Intergenic Intergenic 399361 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 334-346 chr3 68273675 68273941 + 2 NA intron (NM_001252216, intron 2 of 4) MIR3|SINE|MIR -226829 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 176-87 chr3 114297195 114297351 + 2 NA intron (NM_173799, intron 2 of 3) MIR|SINE|MIR 3245 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 331-150 chr14 43705908 43706152 + 2 NA Intergenic Intergenic 801253 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 326-365 chr4 30519117 30519355 + 2 NA Intergenic AluJr4|SINE|Alu -201133 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 227-412 chrX 124570696 124570870 + 2 NA intron (NM_014253, intron 11 of 30) L1MEd|LINE|L1 224501 NM_002351 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 599-136 chr8 89369446 89369905 + 2 NA Intergenic LTR37-int|LTR|ERV1 388036 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 218-192 chr20 55697435 55697606 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -270323 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 899-27 chr7 70941768 70942519 + 2 NA Intergenic LTR60B|LTR|ERV1 -190001 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 475-32 chr10 109084838 109085193 + 2 NA Intergenic Intergenic 838231 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 251-264 chr4 40588737 40588967 + 2 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) 41012 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 395-162 chr2 47700338 47700590 + 2 NA Intergenic LTR37B|LTR|ERV1 -82618 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 303-237 chr2 205591937 205592164 + 2 NA intron (NM_205863, intron 21 of 21) MIRc|SINE|MIR -90450 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 338-52 chr10 26679760 26679985 + 2 NA Intergenic AluJr4|SINE|Alu -17552 NM_001321978 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 294-175 chr18 41067025 41067297 + 2 NA Intergenic Intergenic 453516 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 577-158 chr5 146340817 146341248 + 2 NA 3' UTR (NM_002700, exon 2 of 2) 3' UTR (NM_002700, exon 2 of 2) 2193 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 427-197 chr5 9459351 9459773 + 2 NA intron (NM_003966, intron 1 of 22) MLT1E2|LTR|ERVL-MaLR -51771 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 336-579 chr9 71590367 71590600 + 2 NA Intergenic Intergenic -143512 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 392-197 chr3 3124317 3124684 + 2 NA Intergenic L1ME1|LINE|L1 -2440 NM_001367321 51095 Hs.732725 NM_016000 ENSG00000072756 TRNT1 CCA1|CGI-47|MtCCA|RPEM|SIFD tRNA nucleotidyl transferase 1 protein-coding 296-49 chr10 64994854 64995109 + 2 NA Intergenic Intergenic -70463 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 203-179 chr5 45106966 45107131 + 2 NA Intergenic Intergenic 298101 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 310-562 chr9 132435917 132436189 + 2 NA intron (NM_001282957, intron 1 of 5) intron (NM_001282957, intron 1 of 5) 25842 NM_001282957 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 630-131 chr7 63975547 63975950 + 2 NA Intergenic L1MA9|LINE|L1 -23058 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 266-26 chr1 213691447 213691644 + 2 NA Intergenic Intergenic -233204 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 344-154 chr15 61529870 61530167 + 2 NA Intergenic Intergenic -199900 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 684-67 chr21 23468611 23469037 + 2 NA Intergenic Intergenic -83989 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 329-568 chr8 72472317 72472560 + 2 NA Intergenic L1MC4|LINE|L1 -64787 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 433-197 chr4 35031641 35031989 + 2 NA Intergenic Intergenic -762068 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 284-157 chr17 40589527 40589751 + 2 NA Intergenic Intergenic -24167 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 305-471 chr6 55076502 55076754 + 2 NA Intergenic L1MC1|LINE|L1 -29832 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 367-44 chr10 38281888 38282120 + 2 NA Intergenic L1PA13|LINE|L1 -74376 NR_003086 158160 Hs.652484 NM_182829 ENSG00000099251 HSD17B7P2 HSD17B7|Hsd17b_2|bA291L22.1 hydroxysteroid 17-beta dehydrogenase 7 pseudogene 2 pseudo 370-182 chr17 65672112 65672437 + 2 NA intron (NM_001353129, intron 24 of 26) L1M5|LINE|L1 -110626 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 355-359 chr4 45529541 45529807 + 2 NA Intergenic Intergenic 594380 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 132-21 chr14 29858993 29859098 + 2 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 68051 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 299-49 chr10 39240313 39240463 + 2 NA Intergenic ALR/Alpha|Satellite|centr 543792 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 227-342 chr7 41568123 41568341 + 2 NA Intergenic MIRb|SINE|MIR -125687 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 398-269 chr5 55011490 55011828 + 2 NA Intergenic L1PA12|LINE|L1 12510 NR_104662 102467081 NR_104662 LOC102467081 - uncharacterized LOC102467081 ncRNA 390-46 chr10 107563727 107563983 + 2 NA Intergenic L1MB8|LINE|L1 -399149 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 364-410 chr7 40712666 40712900 + 2 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 267156 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 319-292 chr20 48105577 48105755 + 2 NA Intergenic Intergenic -115549 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 380-103 chr12 125741155 125741355 + 2 NA Intergenic Intergenic 118803 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 337-26 chr1 179672435 179672709 + 2 NA intron (NM_001199091, intron 16 of 16) L1PB1|LINE|L1 -55204 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 366-27 chr1 184304779 184305139 + 2 NA Intergenic L1MA1|LINE|L1 -82070 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 330-408 chr5 22593314 22593637 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 259869 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 582-4 chr1 106187426 106187887 + 2 NA Intergenic Intergenic -159403 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 115-51 chr9 99928207 99928264 + 2 NA intron (NM_017919, intron 2 of 7) Zaphod2|DNA|hAT-Tip100 21581 NM_017919 55014 Hs.704031 NM_017919 ENSG00000136874 STX17 - syntaxin 17 protein-coding 344-8 chr1 58102384 58102716 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 147953 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 305-74 chr10 85352454 85352690 + 2 NA Intergenic Intergenic 80200 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 381-380 chr8 77383367 77383743 + 2 NA Intergenic L1PB1|LINE|L1 -67142 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 143 chr1 34612174 34612273 + 2 NA Intergenic Intergenic 57471 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 252-207 chr2 107704256 107704477 + 2 NA Intergenic L1ME2z|LINE|L1 -49746 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 274-215 chr2 104802902 104803097 + 2 NA Intergenic (AAAAT)n|Simple_repeat|Simple_repeat -45280 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 240-265 chr21 29410373 29410544 + 2 NA Intergenic Intergenic 37957 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 362-34 chr1 204659889 204660154 + 2 NA intron (NM_201630, intron 1 of 1) intron (NM_201630, intron 1 of 1) 25717 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 411-132 chr18 67291533 67291852 + 2 NA Intergenic Intergenic 210108 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 212-51 chr10 111765678 111765882 + 2 NA Intergenic AluJo|SINE|Alu 417985 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 207-291 chr8 82115806 82115976 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -273605 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 729-52 chr3 85084597 85085228 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -22648 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 229-12 chr1 104686209 104686372 + 2 NA Intergenic Intergenic 613267 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 191-198 chr7 39402700 39402871 + 2 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) 3561 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 283-295 chr3 68666995 68667194 + 2 NA Intergenic Intergenic 166457 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 356-458 chr7 85344657 85344960 + 2 NA Intergenic ERVL-int|LTR|ERVL -76314 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 243-453 chr8 107634019 107634231 + 2 NA Intergenic Intergenic -136207 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 297-143 chr14 98481969 98482162 + 2 NA Intergenic Intergenic -229548 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 322-154 chr14 62385970 62386176 + 2 NA Intergenic L1ME2|LINE|L1 -246100 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 388-206 chr21 45752534 45752821 + 2 NA intron (NM_001348243, intron 2 of 15) L1MC5a|LINE|L1 4663 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 604-90 chr2 160077403 160077799 + 2 NA Intergenic Intergenic -14986 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 346-137 chr14 71135259 71135508 + 2 NA Intergenic Intergenic -185093 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 127-59 chr3 175265716 175265795 + 2 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) 5341 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 232-250 chr3 113557255 113557430 + 2 NA intron (NM_001322297, intron 1 of 24) MLT1C|LTR|ERVL-MaLR 24787 NR_136283 54847 Hs.591291 NM_017699 ENSG00000072858 SIDT1 SID-1|SID1 SID1 transmembrane family member 1 protein-coding 317-48 chr10 44416663 44416956 + 2 NA Intergenic Intergenic -31712 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 344-83 chr11 97174561 97174825 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 666268 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 237-265 chr4 56254169 56254349 + 2 NA intron (NM_020722, intron 2 of 10) L3b|LINE|CR1 84064 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 170-25 chr11 39845192 39845310 + 2 NA Intergenic Intergenic 447879 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 482-293 chr9 33189161 33189469 + 2 NA Intergenic Intergenic 21456 NR_108108 101929639 Hs.545818 NR_108108 ENSG00000233554 B4GALT1-AS1 - B4GALT1 antisense RNA 1 ncRNA 190-118 chr3 32413270 32413453 + 2 NA intron (NM_138410, intron 1 of 4) intron (NM_138410, intron 1 of 4) 21508 NM_181472 112616 Hs.440494 NM_138410 ENSG00000153551 CMTM7 CKLFSF7 CKLF like MARVEL transmembrane domain containing 7 protein-coding 422-253 chr6 37418500 37418879 + 2 NA Intergenic L1ME1|LINE|L1 -14532 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 292-180 chr18 9499485 9499723 + 2 NA intron (NM_006788, intron 1 of 9) Tigger3a|DNA|TcMar-Tigger 24091 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 411-77 chr12 133183551 133183920 + 2 NA intron (NM_001165884, intron 2 of 2) intron (NM_001165884, intron 2 of 2) 2240 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 270-212 chr20 54539738 54539891 + 2 NA intron (NM_018431, intron 1 of 7) MLT1H|LTR|ERVL-MaLR 64221 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 588-169 chr9 82108031 82108462 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 119474 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 280-378 chr7 41789350 41789624 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -86397 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 375-37 chr10 22537459 22537814 + 2 NA intron (NM_005028, intron 9 of 9) intron (NM_005028, intron 9 of 9) -99707 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 360-77 chr11 128138641 128138967 + 2 NA Intergenic Intergenic -69962 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 367-215 chr2 117712410 117712622 + 2 NA Intergenic Intergenic -102175 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 342-336 chr3 162638946 162639159 + 2 NA Intergenic HERVL-int|LTR|ERVL 664249 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 281-191 chr2 7668570 7668842 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 230949 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 315-366 chr5 23446082 23446291 + 2 NA Intergenic Intergenic -61423 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 329-117 chr12 34424250 34424481 + 2 NA Intergenic ALR/Alpha|Satellite|centr 401869 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 316-456 chr5 120787766 120787978 + 2 NA Intergenic Intergenic 256408 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 189-65 chr16 35797069 35797214 + 2 NA Intergenic MER101-int|LTR|ERV1 50589 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 509-72 chr14 59808914 59809222 + 2 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 61708 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 344-359 chr4 90970408 90970703 + 2 NA intron (NM_001145065, intron 9 of 10) L1MA10|LINE|L1 735524 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 258-361 chr7 16657104 16657328 + 2 NA intron (NM_001362718, intron 1 of 10) intron (NM_001362718, intron 1 of 10) -3998 NM_001362717 28969 Hs.487635 NM_014038 ENSG00000136261 BZW2 HSPC028|MST017|MSTP017 basic leucine zipper and W2 domains 2 protein-coding 349-248 chr2 35007318 35007544 + 2 NA Intergenic MIRb|SINE|MIR 329874 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 534-54 chr11 115401151 115401647 + 2 NA intron (NM_001098517, intron 1 of 8) AluSx3|SINE|Alu 4643 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 288-429 chr8 18178134 18178316 + 2 NA intron (NM_001160179, intron 2 of 4) intron (NM_001160179, intron 2 of 4) 7758 NM_001160179 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 331-368 chr3 161160259 161160500 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -55007 NM_001349159 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 205-138 chr2 64577595 64577719 + 2 NA intron (NM_001002243, intron 6 of 8) intron (NM_001002243, intron 6 of 8) -29655 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 471-185 chr4 32800692 32801021 + 2 NA Intergenic MER66-int|LTR|ERV1 449818 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 702-100 chr8 86276786 86277194 + 2 NA Intergenic MER4B-int|LTR|ERV1 -46609 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 199-67 chr15 100303670 100303861 + 2 NA intron (NM_139057, intron 3 of 21) AluSq2|SINE|Alu 38210 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 343-50 chr10 45017866 45018128 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 17074 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 614-64 chr2 225372670 225373185 + 2 NA Intergenic Intergenic -26783 NM_001371273 146-36 chr17 72540152 72540280 + 2 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 52588 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 537-70 chr14 81130242 81130640 + 2 NA intron (NM_000369, intron 8 of 9) L2a|LINE|L2 72393 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 277-211 chr2 166400046 166400213 + 2 NA Intergenic L1MB8|LINE|L1 -24142 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 277-122 chr14 83209242 83209492 + 2 NA Intergenic Intergenic 566735 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 334-545 chr8 103641968 103642161 + 2 NA intron (NM_001348497, intron 1 of 22) L1MD3|LINE|L1 -140154 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 341-119 chr12 59425365 59425550 + 2 NA Intergenic Intergenic -170572 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 452-36 chr10 121758357 121758687 + 2 NA intron (NM_001001976, intron 11 of 11) intron (NM_001001976, intron 11 of 11) -160064 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 492-73 chr12 129947431 129947761 + 2 NA Intergenic Charlie20a|DNA|hAT-Charlie -43571 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 329-593 chr8 130129582 130129788 + 2 NA intron (NM_001362925, intron 16 of 29) intron (NM_001362925, intron 16 of 29) -44917 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 640-110 chr5 42513449 42513936 + 2 NA intron (NM_001242401, intron 2 of 10) AluSp|SINE|Alu -34351 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 240-244 chr2 169091332 169091520 + 2 NA intron (NM_001142271, intron 3 of 4) intron (NM_001142271, intron 3 of 4) 10319 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 254-330 chr5 155148769 155149004 + 2 NA Intergenic Intergenic 135131 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 217-321 chr6 38022784 38022945 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 203137 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 302-460 chr8 110674010 110674181 + 2 NA Intergenic Intergenic 353338 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 367-260 chr21 30135947 30136158 + 2 NA Intergenic Intergenic 30753 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 323-522 chr7 147220228 147220495 + 2 NA intron (NM_014141, intron 7 of 22) L1MC1|LINE|L1 -122752 NR_110829 101928700 Hs.571218 NR_110829 ENSG00000236795 LOC101928700 - uncharacterized LOC101928700 ncRNA 231-66 chr12 14347500 14347725 + 2 NA Intergenic AluSx|SINE|Alu -18020 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 526-67 chr13 74957203 74957690 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 282935 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 307-62 chr10 66617281 66617470 + 2 NA intron (NM_001127384, intron 10 of 17) L1PA3|LINE|L1 -308661 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 280-377 chr7 28250744 28250969 + 2 NA Intergenic L1ME4b|LINE|L1 -48465 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 300-73 chr11 92630292 92630473 + 2 NA intron (NM_001008781, intron 2 of 24) L2a|LINE|L2 278286 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 241-320 chr5 178594979 178595145 + 2 NA Intergenic L1MEc|LINE|L1 -4669 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 453-292 chr8 132934038 132934355 + 2 NA intron (NM_003235, intron 24 of 47) AluSx1|SINE|Alu 67238 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 271-57 chr10 103929104 103929323 + 2 NA Intergenic MER4A1_|LTR|ERV1 -11029 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1 subunit of CST complex protein-coding 343-228 chr2 33647800 33648060 + 2 NA Intergenic AluSp|SINE|Alu -48568 NM_001304538 25940 Hs.468140 NM_015475 ENSG00000119812 FAM98A - family with sequence similarity 98 member A protein-coding 350-299 chr3 4547256 4547496 + 2 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 54028 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 324-106 chr11 120090231 120090455 + 2 NA Intergenic Intergenic 38510 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 520-76 chr13 84263185 84263554 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 122767 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 308-324 chr4 41858844 41859021 + 2 NA Intergenic Intergenic 23679 NR_104143 101927074 Hs.611425 NR_104143 ENSG00000245870 LINC00682 - long intergenic non-protein coding RNA 682 ncRNA 293-348 chr5 108501590 108501841 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -119617 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 278-172 chr18 11957391 11957619 + 2 NA Intergenic Intergenic -24002 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 280-293 chr4 88651032 88651306 + 2 NA intron (NM_001271602, intron 3 of 24) intron (NM_001271602, intron 3 of 24) 46660 NM_153757 266812 Hs.12554 NM_153757 ENSG00000177432 NAP1L5 DRLM nucleosome assembly protein 1 like 5 protein-coding 212-315 chr7 146917797 146917965 + 2 NA intron (NM_014141, intron 2 of 22) THE1B|LTR|ERVL-MaLR 143610 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 197-78 chr18 21087748 21087903 + 2 NA intron (NM_005406, intron 1 of 32) L1MDa|LINE|L1 23988 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 364-144 chr15 44627124 44627412 + 2 NA intron (NM_025137, intron 10 of 39) intron (NM_025137, intron 10 of 39) 36394 NM_025137 80208 Hs.656271 NM_025137 ENSG00000104133 SPG11 ALS5|CMT2X|KIAA1840 SPG11 vesicle trafficking associated, spatacsin protein-coding 282-17 chr1 169544559 169544754 + 2 NA intron (NM_000130, intron 11 of 24) intron (NM_000130, intron 11 of 24) 41875 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 341-184 chr16 35645620 35645900 + 2 NA Intergenic L1M5|LINE|L1 -100792 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 506-126 chr2 30511943 30512247 + 2 NA intron (NM_001304445, intron 3 of 7) intron (NM_001304445, intron 3 of 7) 64849 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 388-94 chr13 37697813 37698163 + 2 NA intron (NM_001135958, intron 2 of 9) intron (NM_001135958, intron 2 of 9) -99144 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 490-219 chr5 71982667 71983026 + 2 NA Intergenic L1ME3D|LINE|L1 -124629 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 588-100 chr3 96119452 96119998 + 2 NA Intergenic Intergenic -240239 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 353-376 chr4 67897502 67897691 + 2 NA Intergenic Intergenic -13594 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 276-423 chr7 16997291 16997468 + 2 NA Intergenic L1PA16|LINE|L1 -115396 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 292-76 chr11 71358975 71359203 + 2 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat 64265 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 173-150 chrX 88152570 88152684 + 2 NA Intergenic L1MC5a|LINE|L1 -594598 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 380-167 chr19 43994825 43995050 + 2 NA intron (NM_003445, intron 4 of 4) MER77B|LTR|ERVL 7933 NR_110727 101928063 Hs.502127 NR_110727 ENSG00000266921 LOC101928063 - uncharacterized LOC101928063 ncRNA 366-352 chr5 136864737 136864969 + 2 NA Intergenic Intergenic -263344 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 554-51 chr11 117421663 117422000 + 2 NA Intergenic LTR103_Mam|LTR|ERV1? 93977 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 497-290 chr8 121819939 121820331 + 2 NA Intergenic Intergenic -178695 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 346-40 chr10 8832405 8832634 + 2 NA Intergenic Intergenic -65470 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 148-49 chr21 25453766 25453861 + 2 NA Intergenic MLT2B4|LTR|ERVL -22112 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 301-39 chr10 47393115 47393299 + 2 NA Intergenic L1PA11|LINE|L1 -8914 NM_001346933 118738 Hs.27788 NM_153034 ENSG00000265763 ZNF488 - zinc finger protein 488 protein-coding 416-198 chr20 5468131 5468360 + 2 NA Intergenic L1MB3|LINE|L1 -2951 NR_029405 643406 Hs.431161 NM_175877 LOC643406 - uncharacterized LOC643406 ncRNA 326-286 chr20 140993 141276 + 2 NA Intergenic L1ME1|LINE|L1 -1456 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 525-44 chr11 99100778 99101278 + 2 NA intron (NM_001243270, intron 1 of 23) THE1B|LTR|ERVL-MaLR 80079 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 501-228 chr6 67078410 67078742 + 2 NA Intergenic Intergenic -976775 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 308-274 chr21 25476525 25476688 + 2 NA Intergenic Intergenic -44905 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 216-262 chr4 146051773 146051935 + 2 NA Intergenic Intergenic 70059 NR_038331 100505545 Hs.122199 NR_038331 ENSG00000248809 LINC01095 - long intergenic non-protein coding RNA 1095 ncRNA 335-465 chr6 56934846 56935109 + 2 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) 19853 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 250-136 chr15 54064884 54065093 + 2 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 52340 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 339-263 chr2 71464485 71464764 + 2 NA intron (NM_003494, intron 1 of 54) L2a|LINE|L2 -2075 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 194-19 chr10 12874008 12874148 + 2 NA Intergenic Intergenic 127635 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 314-452 chr5 24860859 24861031 + 2 NA Intergenic Intergenic -20362 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 284-207 chr2 122485026 122485220 + 2 NA Intergenic Intergenic 588358 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 242-107 chr14 66788501 66788656 + 2 NA intron (NM_001024218, intron 3 of 21) PABL_A-int|LTR|ERV1 281171 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 351-519 chr9 104359997 104360248 + 2 NA Intergenic Intergenic 89893 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 239-363 chr7 10280887 10281065 + 2 NA Intergenic Intergenic -421700 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 232-174 chr2 82045568 82045724 + 2 NA Intergenic L1MA8|LINE|L1 -578700 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 381-118 chr16 13578488 13578831 + 2 NA Intergenic Intergenic -341498 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 225-53 chr11 22737508 22737669 + 2 NA intron (NM_005256, intron 3 of 6) intron (NM_005256, intron 3 of 6) 62814 NM_005256 2620 Hs.711297 NM_005256 ENSG00000148935 GAS2 GAS-2 growth arrest specific 2 protein-coding 334-575 chr9 102164052 102164245 + 2 NA Intergenic Intergenic -355489 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 331-243 chr2 7602892 7603148 + 2 NA Intergenic L1M5|LINE|L1 181759 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 192-122 chr20 48534608 48534771 + 2 NA Intergenic X1_LINE|LINE|CR1 174778 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 272-44 chr10 41903887 41904032 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 464086 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 373-313 chr5 25076873 25077217 + 2 NA Intergenic Intergenic 113611 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 244-226 chr3 46799594 46799796 + 2 NA Intergenic L1M4|LINE|L1 12879 NR_160551 729756 NR_160551 PRSS44P PRSS44|TESSP-4|TESSP4 serine protease 44, pseudogene pseudo 520-18 chr1 173643354 173643731 + 2 NA intron (NM_198493, intron 3 of 5) intron (NM_198493, intron 3 of 5) 8204 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 355-300 chr22 27294842 27295173 + 2 NA Intergenic Intergenic -15644 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 428-105 chr18 68731166 68731517 + 2 NA intron (NM_001093729, intron 2 of 9) L1MC4|LINE|L1 16125 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 240-7 chr1 57256003 57256185 + 2 NA intron (NM_001353980, intron 5 of 5) intron (NM_001353980, intron 5 of 5) 167018 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 541-184 chr5 45199310 45199755 + 2 NA Intergenic L2c|LINE|L2 390585 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 1005-20 chr6 91964171 91965000 + 2 NA Intergenic Intergenic -274157 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 309-301 chr20 24756870 24757044 + 2 NA Intergenic L1MCa|LINE|L1 -192312 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 836-56 chr7 8363994 8364671 + 2 NA Intergenic Intergenic -69277 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 313-536 chr8 119153226 119153455 + 2 NA Intergenic Intergenic -55023 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 316-52 chr10 7290053 7290288 + 2 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) -103386 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 208-55 chr12 24674750 24674890 + 2 NA Intergenic L1M5|LINE|L1 -90652 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 304-116 chr12 78717236 78717453 + 2 NA Intergenic Intergenic -146638 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 361-25 chr1 209164132 209164326 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -161227 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 453-67 chr14 45766054 45766401 + 2 NA Intergenic MLT2B2|LTR|ERVL -50625 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 501-154 chr3 21551103 21551488 + 2 NA intron (NR_046731, intron 1 of 2) intron (NR_046731, intron 1 of 2) 8506 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 261-191 chr2 125798333 125798534 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 319552 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 437-290 chr8 142910545 142910962 + 2 NA 3' UTR (NM_000498, exon 9 of 9) 3' UTR (NM_000498, exon 9 of 9) 7090 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 332-111 chr12 5235731 5236047 + 2 NA intron (NR_120476, intron 4 of 4) MIRc|SINE|MIR 7262 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 626-4 chr1 41617358 41617808 + 2 NA intron (NM_024503, intron 3 of 8) intron (NM_024503, intron 3 of 8) -132900 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 199-138 chr20 9295511 9295663 + 2 NA intron (NM_182797, intron 1 of 35) L1PA4|LINE|L1 -12213 NM_000933 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 342-521 chr8 111132152 111132391 + 2 NA intron (NR_125418, intron 1 of 3) L1MB1|LINE|L1 103932 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 583-76 chr18 64503174 64503590 + 2 NA Intergenic L1ME4a|LINE|L1 -243327 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 493-153 chr2 100603460 100603762 + 2 NA promoter-TSS (NR_146956) promoter-TSS (NR_146956) -128 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 487-209 chr4 63689856 63690213 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 719416 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 549-76 chr16 82515972 82516361 + 2 NA Intergenic Intergenic -110803 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 473-255 chr7 12761010 12761454 + 2 NA Intergenic Intergenic 73599 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 372-250 chr2 116652379 116652649 + 2 NA Intergenic MER70C|LTR|ERVL -1162177 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 332-488 chr7 62963519 62963776 + 2 NA Intergenic ALR/Alpha|Satellite|centr 340409 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 523-47 chr10 111031701 111032130 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 42989 NR_031614 100313921 NR_031614 ENSG00000221214 MIR548E MIRN548E|hsa-mir-548e microRNA 548e ncRNA 395-36 chr10 39034304 39034601 + 2 NA Intergenic ALR/Alpha|Satellite|centr 337856 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 301-401 chr6 128926078 128926335 + 2 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 43065 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 184-74 chr18 21353252 21353420 + 2 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 111094 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 211-130 chr19 53292434 53292615 + 2 NA Intergenic L1M2|LINE|L1 -1090 NR_159880 112401 Hs.348263 NM_033341 ENSG00000163098 BIRC8 ILP-2|ILP2|RNF136|hILP2 baculoviral IAP repeat containing 8 pseudo 338-480 chr6 144992132 144992447 + 2 NA Intergenic Intergenic 586634 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 209-22 chr1 218789324 218789458 + 2 NA intron (NR_031644, intron 5 of 6) MSTB1|LTR|ERVL-MaLR 129120 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 245-186 chr2 35808727 35808873 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 337395 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 272-398 chr6 134452644 134452873 + 2 NA intron (NR_038219, intron 2 of 4) L1ME4a|LINE|L1 14368 NR_038218 154092 Hs.223718 NR_038216 LINC01010 - long intergenic non-protein coding RNA 1010 ncRNA 442-46 chr11 82774711 82774981 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -40982 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 414-200 chr22 32750593 32750966 + 2 NA intron (NM_003490, intron 6 of 13) L2a|LINE|L2 -50037 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 393-129 chr17 60760417 60760670 + 2 NA intron (NM_001330413, intron 6 of 25) L1MA4A|LINE|L1 82692 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 276-118 chr12 119353959 119354193 + 2 NA intron (NM_178499, intron 1 of 13) (CTCT)n|Simple_repeat|Simple_repeat 19347 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 326-184 chr16 17028925 17029110 + 2 NA Intergenic LTR88a|LTR|Gypsy? -105487 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 307-357 chr4 131505786 131506002 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -258944 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 411-6 chr1 73792976 73793383 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger 118500 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 469-272 chr8 18902261 18902590 + 2 NA intron (NM_015310, intron 2 of 15) L1MA5|LINE|L1 -15368 NM_001362819 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 670-111 chr7 49082369 49082933 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 158104 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 217-180 chr2 107188564 107188721 + 2 NA intron (NR_049853, intron 2 of 3) L1PA13|LINE|L1 160883 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 397-229 chr4 93256455 93256688 + 2 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -572182 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 342-90 chr11 36168878 36169178 + 2 NA intron (NM_001304263, intron 3 of 4) intron (NM_001304263, intron 3 of 4) -91127 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 164-13 chr10 58441548 58441656 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 56192 NM_003201 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 703-16 chr10 112009304 112009824 + 2 NA Intergenic Intergenic 174201 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 440-262 chr9 24367890 24368204 + 2 NA Intergenic L1PREC2|LINE|L1 177629 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 356-242 chr2 65490434 65490654 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -57945 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 467-73 chr13 82092021 82092411 + 2 NA Intergenic MER31A|LTR|ERV1 -865233 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 324-410 chr4 170489614 170489786 + 2 NA Intergenic Intergenic 254035 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 469-121 chr19 30307857 30308294 + 2 NA Intergenic Intergenic -64309 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 573-197 chr8 104130928 104131441 + 2 NA intron (NM_001348498, intron 19 of 24) MIRb|SINE|MIR -92151 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 336-268 chr2 61970468 61970697 + 2 NA intron (NM_152516, intron 1 of 2) MER2|DNA|TcMar-Tigger 64940 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 333-403 chr4 91401100 91401336 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 876084 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 572-70 chr17 52899104 52899527 + 2 NA intron (NR_146899, intron 2 of 2) intron (NR_146899, intron 2 of 2) 37194 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 719-25 chr14 45952033 45952615 + 2 NA Intergenic Intergenic -111835 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 288-363 chr6 51435681 51435832 + 2 NA Intergenic Intergenic -186114 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 372-137 chr14 46309192 46309489 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -162019 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 372-395 chr5 29963190 29963491 + 2 NA Intergenic AluSz6|SINE|Alu 82780 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 332-347 chr3 127085059 127085381 + 2 NA Intergenic Intergenic 96626 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 557-159 chr5 56213164 56213551 + 2 NA intron (NM_024669, intron 2 of 11) L1ME4b|LINE|L1 19973 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 591-103 chr3 194029953 194030477 + 2 NA intron (NR_136179, intron 1 of 2) intron (NR_136179, intron 1 of 2) -26556 NR_033944 647323 Hs.652830 NR_033944 ENSG00000214146 LINC02026 - long intergenic non-protein coding RNA 2026 ncRNA 403-207 chr3 190415075 190415351 + 2 NA Intergenic Intergenic 27341 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 310-552 chr9 79175912 79176174 + 2 NA Intergenic Intergenic -30377 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 245-185 chr2 35649466 35649706 + 2 NA Intergenic L1MEf|LINE|L1 178181 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 516-25 chr10 87681565 87681916 + 2 NA intron (NM_001015880, intron 1 of 12) L1MB7|LINE|L1 21862 NM_004670 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 260-102 chr12 40458615 40458777 + 2 NA intron (NM_173600, intron 43 of 173) intron (NM_173600, intron 43 of 173) 65302 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 356-457 chr7 82885710 82885998 + 2 NA intron (NM_033026, intron 9 of 24) MIRc|SINE|MIR 277030 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 230-181 chr2 145299924 145300079 + 2 NA Intergenic Intergenic 632034 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 379-107 chr15 91175715 91175945 + 2 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 74034 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 232-57 chr11 41145601 41145821 + 2 NA intron (NM_001258419, intron 1 of 6) L2b|LINE|L2 313925 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 368-103 chr12 34471958 34472144 + 2 NA Intergenic ALR/Alpha|Satellite|centr 449555 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 342-113 chr12 46842944 46843184 + 2 NA Intergenic Intergenic -17067 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 334-422 chr5 60576795 60576982 + 2 NA Intergenic Intergenic -80602 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 382-385 chr7 63122917 63123210 + 2 NA Intergenic L1M4c|LINE|L1 180993 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 313-517 chr8 43466313 43466484 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 173956 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 738-46 chr4 85203809 85204266 + 2 NA Intergenic L1PA10|LINE|L1 236553 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 334-140 chr14 45589165 45589401 + 2 NA Intergenic Intergenic 126319 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 359-235 chr2 91415056 91415319 + 2 NA Intergenic Intergenic 244762 NR_027238 654342 Hs.469287 NR_027238 LSP1P4 - LSP1 pseudogene 4 pseudo 205-143 chr2 116239636 116239783 + 2 NA Intergenic L2a|LINE|L2 895894 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 220-152 chr2 12472670 12472830 + 2 NA intron (NR_110196, intron 4 of 5) L1MEd|LINE|L1 -244122 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 338-383 chr4 59233544 59233794 + 2 NA Intergenic L1PA13|LINE|L1 220096 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 315-499 chr8 135028146 135028318 + 2 NA Intergenic AluSz|SINE|Alu 178297 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 398-225 chr3 184901805 184902044 + 2 NA intron (NM_001009921, intron 24 of 46) L1ME1|LINE|L1 89417 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 177-130 chr5 95145651 95145739 + 2 NA intron (NM_024717, intron 1 of 22) L1PA16|LINE|L1 -63829 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 800-17 chr12 48470977 48471604 + 2 NA Intergenic L1MA1|LINE|L1 -1375 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 211-32 chr10 59270611 59270764 + 2 NA intron (NM_001347852, intron 6 of 12) intron (NM_001347852, intron 6 of 12) 91862 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 248-21 chr1 186925305 186925529 + 2 NA intron (NM_024420, intron 7 of 17) intron (NM_024420, intron 7 of 17) 96468 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 418-27 chr10 35800544 35800926 + 2 NA non-coding (NR_110138, exon 3 of 3) non-coding (NR_110138, exon 3 of 3) 22433 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 175-29 chr11 4519252 4519390 + 2 NA Intergenic Intergenic -25870 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 258-207 chr2 159638425 159638609 + 2 NA Intergenic L1M1|LINE|L1 -21916 NM_001289975 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 519-135 chr20 46515499 46515845 + 2 NA Intergenic Intergenic -2100 NM_001270497 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 210-263 chr7 39182697 39182878 + 2 NA intron (NM_001370959, intron 2 of 9) L2a|LINE|L2 146347 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 449-121 chr2 78185247 78185610 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 96698 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 365-178 chr2 5948027 5948326 + 2 NA intron (NR_026832, intron 1 of 1) intron (NR_026832, intron 1 of 1) 15489 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 320-510 chr7 37735476 37735684 + 2 NA intron (NM_181791, intron 3 of 3) L1MEg|LINE|L1 51814 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 516-4 chr1 68620125 68620453 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -123207 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 232-138 chr18 4503346 4503548 + 2 NA Intergenic L1M2|LINE|L1 -48140 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 513-282 chr8 86679072 86679474 + 2 NA intron (NM_019098, intron 3 of 17) (ATTT)n|Simple_repeat|Simple_repeat 64402 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 275-230 chr21 19442616 19442853 + 2 NA Intergenic Intergenic 457021 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 420-167 chr20 33193970 33194310 + 2 NA intron (NR_026760, intron 1 of 8) MIRb|SINE|MIR 535 NR_026760 317716 Hs.434194 NM_173859 ENSG00000183566 BPIFA4P BASE BPI fold containing family A member 4, pseudogene pseudo 498-80 chr14 46194041 46194399 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 130061 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 375-180 chr18 28031358 28031644 + 2 NA intron (NM_001792, intron 2 of 15) L2|LINE|L2 5140 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 639-106 chr6 166678245 166678614 + 2 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) -51178 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 242-381 chr7 116012060 116012240 + 2 NA intron (NM_012252, intron 1 of 7) intron (NM_012252, intron 1 of 7) 18613 NM_001018058 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 444-174 chr4 84007425 84007708 + 2 NA intron (NR_125909, intron 8 of 8) L1MC3|LINE|L1 291603 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 507-41 chr10 121468850 121469182 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 62298 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 310-80 chr11 72565827 72566045 + 2 NA Intergenic L1M5|LINE|L1 -4720 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 332-183 chr16 51654549 51654865 + 2 NA Intergenic MLT2C1|LTR|ERVL -107812 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 270-308 chr5 89193520 89193767 + 2 NA intron (NR_136219, intron 6 of 9) L1MA8|LINE|L1 -289538 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 577-38 chr11 21106125 21106496 + 2 NA intron (NM_201551, intron 12 of 18) MIR|SINE|MIR 436724 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 551-180 chr6 147125720 147126086 + 2 NA intron (NR_034115, intron 3 of 10) L1ME4a|LINE|L1 -33022 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 249-18 chr1 105919085 105919262 + 2 NA Intergenic Intergenic 109080 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 175-51 chr14 89641291 89641415 + 2 NA Intergenic Intergenic -22188 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 268-395 chr8 53132841 53133032 + 2 NA Intergenic L1MA6|LINE|L1 118701 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 338-100 chr11 58492825 58493080 + 2 NA Intergenic L1MB1|LINE|L1 15153 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 356-485 chr8 120184228 120184447 + 2 NA intron (NM_021110, intron 5 of 47) AluSz6|SINE|Alu 59235 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 329-184 chr15 46214389 46214587 + 2 NA Intergenic L1PB1|LINE|L1 509293 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 278-228 chr2 123764289 123764539 + 2 NA Intergenic L1M2c|LINE|L1 260760 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 334-87 chr11 44272849 44273054 + 2 NA intron (NM_021926, intron 2 of 3) intron (NM_021926, intron 2 of 3) 37188 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 401-288 chr6 88676256 88676557 + 2 NA intron (NM_001286428, intron 12 of 13) L1MB7|LINE|L1 -137037 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 309-430 chr5 23743733 23744005 + 2 NA Intergenic Intergenic -207479 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 291-236 chr2 160777776 160778016 + 2 NA Intergenic L1PA15|LINE|L1 -284089 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 369-427 chr8 134947809 134947998 + 2 NA Intergenic L2b|LINE|L2 97968 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 466-106 chr18 8661318 8661662 + 2 NA Intergenic Intergenic 46131 NR_120598 100287082 Hs.439434 NR_120598 ENSG00000265962 GACAT2 MTCL1-AS1|MTCL1AS1 gastric cancer associated transcript 2 ncRNA 243-137 chr15 51007627 51007821 + 2 NA Intergenic L1MC1|LINE|L1 -29764 NR_146310 109729174 NR_146310 ENSG00000259240 MIR4713HG - MIR4713 host gene ncRNA 330-552 chr9 71377373 71377600 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 69485 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 230-160 chr2 6087946 6088145 + 2 NA Intergenic Intergenic 106067 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 152-32 chr15 96881581 96881701 + 2 NA Intergenic L2a|LINE|L2 98206 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 260-220 chr2 143989760 143989946 + 2 NA intron (NM_001354353, intron 7 of 9) MER102a|DNA|hAT-Charlie 52786 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 281-112 chr14 33743510 33743670 + 2 NA intron (NM_001165893, intron 6 of 10) Tigger1|DNA|TcMar-Tigger 34653 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 379-101 chr15 46112635 46112849 + 2 NA Intergenic Intergenic 407547 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 501-266 chr8 116280249 116280669 + 2 NA intron (NR_046215, intron 1 of 13) LTR33|LTR|ERVL 44600 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 343-478 chr6 110462289 110462508 + 2 NA intron (NM_033125, intron 1 of 7) L1PA17|LINE|L1 14215 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 283-224 chr2 40969702 40969938 + 2 NA Intergenic L3|LINE|CR1 -457385 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 343-327 chr3 14080273 14080552 + 2 NA Intergenic MER57A1|LTR|ERV1 44458 NM_001098502 131474 Hs.517815 NM_144636 ENSG00000163528 CHCHD4 MIA40|TIMM40 coiled-coil-helix-coiled-coil-helix domain containing 4 protein-coding 296-170 chr16 35902538 35902724 + 2 NA Intergenic L1MEg|LINE|L1 156079 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 223-19 chr1 174571688 174571842 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 123801 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 340-31 chr1 222317825 222318082 + 2 NA Intergenic L3|LINE|CR1 230151 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 209-60 chr11 112448937 112449111 + 2 NA Intergenic HAL1|LINE|L1 -33208 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 256-333 chr5 113907515 113907676 + 2 NA Intergenic L1MEd|LINE|L1 393901 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 877-22 chr4 64559014 64559590 + 2 NA Intergenic Intergenic -149842 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 324-382 chr4 43838211 43838429 + 2 NA Intergenic L1M2|LINE|L1 -178541 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 363-259 chr20 47114780 47115011 + 2 NA intron (NM_172110, intron 9 of 13) MSTB|LTR|ERVL-MaLR -52072 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 333-42 chr1 203603674 203603882 + 2 NA Intergenic Intergenic -23009 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 212-90 chr12 128589777 128589921 + 2 NA intron (NM_001136103, intron 3 of 8) MIR|SINE|MIR 234109 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 248-210 chr2 200732009 200732164 + 2 NA intron (NR_135012, intron 4 of 30) intron (NR_135012, intron 4 of 30) 3091 NR_037886 100507140 Hs.382116 NR_037886 ENSG00000237166 LINC01792 - long intergenic non-protein coding RNA 1792 ncRNA 188-173 chr5 154665919 154666070 + 2 NA Intergenic Intergenic -16985 NM_001367713 23367 Hs.292078 NM_015315 ENSG00000155506 LARP1 LARP La ribonucleoprotein domain family member 1 protein-coding 244-84 chr14 24637971 24638128 + 2 NA Intergenic Intergenic -3859 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 368-54 chr10 55531768 55532072 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -67122 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 386-48 chr11 27858370 27858725 + 2 NA Intergenic Intergenic -136517 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 457-238 chr7 80976497 80976863 + 2 NA Intergenic MER68|LTR|ERVL -54291 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 172-133 chr8 83616392 83616510 + 2 NA Intergenic Intergenic 212693 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 149-29 chr14 49418926 49419020 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 167407 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 238-278 chr4 145475093 145475325 + 2 NA Intergenic Intergenic -6097 NM_001354812 4086 Hs.604588 NM_005900 ENSG00000170365 SMAD1 BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 SMAD family member 1 protein-coding 437-98 chr16 51206465 51206827 + 2 NA intron (NR_039672, intron 5 of 6) L1MA4A|LINE|L1 -55374 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 372-146 chr14 63874890 63875125 + 2 NA intron (NM_015180, intron 1 of 114) L3|LINE|CR1 22003 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 371-149 chr18 36464328 36464655 + 2 NA intron (NM_001281740, intron 3 of 28) intron (NM_001281740, intron 3 of 28) 166778 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 279-185 chr2 90195546 90195817 + 2 NA Intergenic Intergenic -557774 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 365-155 chr17 74634308 74634496 + 2 NA Intergenic Intergenic -10664 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 390-326 chr6 79190296 79190562 + 2 NA Intergenic Intergenic -43245 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 197-12 chr1 115577391 115577562 + 2 NA Intergenic Intergenic -64494 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 362-62 chr10 56775228 56775556 + 2 NA Intergenic Intergenic -414119 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 138-28 chr16 57613719 57613849 + 2 NA Intergenic L2a|LINE|L2 -5954 NM_001370435 9289 Hs.513633 NM_005682 ENSG00000205336 ADGRG1 BFPP|BPPR|GPR56|TM7LN4|TM7XN1 adhesion G protein-coupled receptor G1 protein-coding 284-46 chr10 74856997 74857195 + 2 NA intron (NM_001370144, intron 3 of 15) L1MC4|LINE|L1 30496 NM_001370144 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 131-43 chr2 210546254 210546361 + 2 NA intron (NM_001369256, intron 1 of 38) intron (NM_001369256, intron 1 of 38) -2818 NR_161225 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 265-180 chr2 69256462 69256639 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 130677 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 398-218 chr3 131253584 131253807 + 2 NA intron (NM_001353036, intron 14 of 14) intron (NM_001353036, intron 14 of 14) -108150 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 388-151 chr2 28069383 28069707 + 2 NA intron (NM_199193, intron 7 of 13) intron (NM_199193, intron 7 of 13) 73178 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 266-356 chr6 39527589 39527755 + 2 NA intron (NM_001289021, intron 12 of 21) HAL1ME|LINE|L1 -96282 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 313-48 chr10 63979849 63980066 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -458067 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 829-31 chr5 28630573 28631231 + 2 NA Intergenic Intergenic -295968 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 267-236 chr21 14797905 14798119 + 2 NA Intergenic L1M3c|LINE|L1 120656 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 328-451 chr5 56784521 56784707 + 2 NA Intergenic Intergenic -11743 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 543-179 chr4 41550880 41551413 + 2 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) 12989 NM_001330672 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 343-589 chrX 49811452 49811773 + 2 NA Intergenic MER34B|LTR|ERV1 -17648 NM_001318877 9506 Hs.441038 NM_007003 ENSG00000101951 PAGE4 CT16.7|GAGE-9|GAGEC1|JM-27|JM27|PAGE-1|PAGE-4 PAGE family member 4 protein-coding 322-424 chr5 44266189 44266412 + 2 NA Intergenic AluY|SINE|Alu -122432 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 284-342 chr6 34953993 34954252 + 2 NA intron (NM_015245, intron 1 of 23) intron (NM_015245, intron 1 of 23) 64867 NM_015245 23294 Hs.656492 NM_015245 ENSG00000064999 ANKS1A ANKS1 ankyrin repeat and sterile alpha motif domain containing 1A protein-coding 444-180 chr4 132361086 132361436 + 2 NA Intergenic Intergenic -229828 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 257-186 chr2 58236703 58236885 + 2 NA intron (NM_001114636, intron 1 of 13) L1MEc|LINE|L1 4586 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 504-283 chrX 23491808 23492177 + 2 NA Intergenic LTR8A|LTR|ERV1 157143 NM_173495 139411 Hs.319503 NM_173495 ENSG00000165186 PTCHD1 AUTSX4 patched domain containing 1 protein-coding 322-152 chr14 48705373 48705658 + 2 NA Intergenic Intergenic 880865 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 388-41 chr10 49149037 49149320 + 2 NA intron (NR_038973, intron 5 of 5) MLT2D|LTR|ERVL -15158 NM_001164484 170370 Hs.646291 NM_001164484 ENSG00000172538 FAM170B C10orf73 family with sequence similarity 170 member B protein-coding 330-270 chr2 79520643 79520938 + 2 NA intron (NM_001164883, intron 1 of 16) L1MD|LINE|L1 -2393 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 506-4 chr1 60480186 60480598 + 2 NA Intergenic L1ME3A|LINE|L1 142293 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 191-7 chr1 87791457 87791623 + 2 NA Intergenic Intergenic -419885 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 212-349 chr9 82720029 82720170 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 343043 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 274-348 chr7 37774638 37774823 + 2 NA Intergenic AluSg|SINE|Alu -73867 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 374-54 chr11 81363189 81363477 + 2 NA Intergenic L2c|LINE|L2 527503 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 394-320 chr8 24930596 24930823 + 2 NA Intergenic MIRc|SINE|MIR 15722 NM_001105541 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 530-215 chr6 61265200 61265571 + 2 NA Intergenic LTR40A1|LTR|ERVL -308745 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 591-101 chr3 175414758 175415329 + 2 NA intron (NM_207015, intron 5 of 13) intron (NM_207015, intron 5 of 13) 45503 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 392-216 chr3 166655295 166655600 + 2 NA Intergenic L1MA1|LINE|L1 -243236 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 346-451 chr6 164914767 164914949 + 2 NA Intergenic Intergenic -92795 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 469-262 chr7 34523604 34523850 + 2 NA intron (NR_033665, intron 2 of 3) L1MD1|LINE|L1 -134491 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 355-443 chr6 138624924 138625113 + 2 NA Intergenic Intergenic -52449 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 330-230 chr18 63081899 63082098 + 2 NA Intergenic L1MB5|LINE|L1 237382 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 505-221 chr4 95943526 95943837 + 2 NA Intergenic Intergenic 103588 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 581-70 chr19 44447709 44448131 + 2 NA intron (NM_001278510, intron 1 of 5) intron (NM_001278510, intron 1 of 5) 552 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 465-240 chr5 133126129 133126441 + 2 NA Intergenic AluSx1|SINE|Alu 74272 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 263-89 chr13 21155548 21155726 + 2 NA intron (NM_001166017, intron 7 of 7) intron (NM_001166017, intron 7 of 7) 15091 NM_001366643 10284 Hs.524899 NM_005870 ENSG00000150459 SAP18 2HOR0202|SAP18P Sin3A associated protein 18 protein-coding 229-385 chr8 74849615 74849810 + 2 NA 3' UTR (NM_001324403, exon 6 of 6) 3' UTR (NM_001324403, exon 6 of 6) 25178 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 306-94 chr11 127562729 127562942 + 2 NA Intergenic Intergenic 291765 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 537-168 chr4 46190326 46190805 + 2 NA Intergenic Intergenic -66511 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 162-25 chr12 1422612 1422695 + 2 NA intron (NR_027948, intron 18 of 19) L1MA5|LINE|L1 -77838 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 316-246 chr2 10766774 10767056 + 2 NA intron (NM_001039362, intron 5 of 13) L1MD2|LINE|L1 45285 NM_001039362 245973 Hs.580464 NM_144583 ENSG00000143882 ATP6V1C2 ATP6C2|VMA5 ATPase H+ transporting V1 subunit C2 protein-coding 421-12 chr1 152901355 152901728 + 2 NA Intergenic Intergenic -7004 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 363-258 chr20 42624648 42624916 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -60701 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 351-112 chr13 80656537 80656725 + 2 NA Intergenic Intergenic -315505 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 146-82 chr7 3422001 3422102 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 120799 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 267-35 chr1 239598996 239599254 + 2 NA intron (NM_001347716, intron 3 of 7) L2|LINE|L2 -29948 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 119-6 chr1 220916026 220916118 + 2 NA Intergenic Intergenic -35932 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 189-142 chr4 45064398 45064548 + 2 NA Intergenic Intergenic -337839 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 371-387 chr8 97371319 97371630 + 2 NA intron (NR_125390, intron 2 of 2) L1M4c|LINE|L1 13209 NR_145760 109617016 NR_145760 ENSG00000207215 SNORD3H - small nucleolar RNA, C/D box 3H snoRNA 360-19 chr1 212186170 212186503 + 2 NA Intergenic Intergenic 48400 NR_125983 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 286-399 chr6 146038923 146039083 + 2 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 9805 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 385-334 chr6 101158342 101158595 + 2 NA Intergenic L1MA4A|LINE|L1 -240517 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 239-64 chr11 104259652 104259808 + 2 NA Intergenic Intergenic -95583 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 212-316 chr8 4080689 4080873 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 914133 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 308-379 chr5 41286915 41287125 + 2 NA Intergenic Intergenic -25551 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 569-180 chr8 127168177 127168517 + 2 NA Intergenic L1MC1|LINE|L1 29280 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 415-299 chr9 4191831 4192212 + 2 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -39838 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 230-218 chr21 30564496 30564638 + 2 NA Intergenic Intergenic -3254 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 376-214 chr20 39579928 39580171 + 2 NA Intergenic Intergenic -355301 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 277-376 chr7 48471321 48471485 + 2 NA intron (NM_152701, intron 44 of 61) Eulor2B|DNA?|DNA? 299945 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 253-346 chr5 150548375 150548533 + 2 NA intron (NM_001543, intron 12 of 14) intron (NM_001543, intron 12 of 14) 40323 NM_001543 3340 Hs.222055 NM_001543 ENSG00000070614 NDST1 HSST|MRT46|NST1 N-deacetylase and N-sulfotransferase 1 protein-coding 292-402 chr7 33585332 33585503 + 2 NA intron (NR_145411, intron 22 of 23) intron (NR_145411, intron 22 of 23) -319498 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 337-422 chr4 177730958 177731194 + 2 NA intron (NR_028342, intron 1 of 5) L1ME1|LINE|L1 2319 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 178-111 chr5 39340144 39340282 + 2 NA intron (NM_001737, intron 4 of 10) L2c|LINE|L2 24282 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 145-61 chr4 66552538 66552653 + 2 NA Intergenic L1MA1|LINE|L1 275771 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 395-102 chr14 101795223 101795611 + 2 NA intron (NM_001161726, intron 3 of 14) L1M5|LINE|L1 -14418 NM_002719 5527 Hs.368264 NM_002719 ENSG00000078304 PPP2R5C B56G|B56gamma|PR61G protein phosphatase 2 regulatory subunit B'gamma protein-coding 225-358 chr8 98967281 98967432 + 2 NA Intergenic L2b|LINE|L2 22914 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 324-496 chr7 55833588 55833785 + 2 NA intron (NM_207366, intron 6 of 9) AluSz|SINE|Alu 29066 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 291-110 chr13 57914369 57914641 + 2 NA Intergenic L2c|LINE|L2 -251322 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 537-47 chr11 108986272 108986612 + 2 NA Intergenic L1MEj|LINE|L1 321373 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 328-263 chr2 61678938 61679126 + 2 NA Intergenic LTR26B|LTR|ERV1 -140676 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 390-415 chr9 36817040 36817374 + 2 NA Intergenic AluJb|SINE|Alu 6392 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 462-72 chr13 106968011 106968383 + 2 NA Intergenic L1MB1|LINE|L1 314317 NR_047026 100874173 Hs.569297 NR_047026 ENSG00000230156 LINC00443 - long intergenic non-protein coding RNA 443 ncRNA 301-143 chr16 14195651 14195866 + 2 NA intron (NM_001365411, intron 1 of 14) (AGCTCT)n|Simple_repeat|Simple_repeat 9072 NM_001365411 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 336-514 chr7 39614453 39614715 + 2 NA Intergenic Intergenic -8988 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 325-248 chr19 30471645 30471930 + 2 NA intron (NM_014717, intron 2 of 4) intron (NM_014717, intron 2 of 4) 99403 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 487-93 chr14 88084411 88084750 + 2 NA intron (NR_046094, intron 3 of 3) intron (NR_046094, intron 3 of 3) -58268 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 250-455 chr9 38134261 38134408 + 2 NA Intergenic Intergenic -65107 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 381-102 chr14 31336828 31337030 + 2 NA intron (NM_015473, intron 22 of 35) Tigger3a|DNA|TcMar-Tigger 83621 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 365-64 chr11 21798625 21798872 + 2 NA Intergenic L2|LINE|L2 -394337 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 305-300 chr20 426248 426420 + 2 NA intron (NR_136659, intron 8 of 11) L1MA2|LINE|L1 18035 NM_006462 10616 Hs.29546 NM_006462 ENSG00000125826 RBCK1 C20orf18|HOIL-1|HOIL1|PBMEI|PGBM1|RBCK2|RNF54|UBCE7IP3|XAP3|XAP4|ZRANB4 RANBP2-type and C3HC4-type zinc finger containing 1 protein-coding 263-177 chr19 7793936 7794087 + 2 NA Intergenic HERVK14C-int|LTR|ERVK 6527 NR_002931 440508 Hs.568222 NR_002931 CLEC4GP1 - C-type lectin domain family 4 member G pseudogene 1 pseudo 317-272 chr20 13893157 13893391 + 2 NA intron (NR_073206, intron 6 of 20) MER101B|LTR|ERV1 97340 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 229-366 chr7 90292258 90292469 + 2 NA intron (NM_001039706, intron 15 of 22) PABL_A-int|LTR|ERV1 -42860 NR_110085 101927446 Hs.734999 NR_110085 ENSG00000105793 LOC101927446 - uncharacterized LOC101927446 ncRNA 179-70 chr3 106937543 106937695 + 2 NA Intergenic Intergenic 303019 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 205-302 chrX 74112054 74112189 + 2 NA intron (NR_028379, intron 5 of 6) L1MA4|LINE|L1 106340 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 190-136 chr4 63458553 63458702 + 2 NA Intergenic L1ME1|LINE|L1 950823 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 271-379 chr6 62947152 62947341 + 2 NA Intergenic Intergenic 372731 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 260-349 chr5 43502122 43502346 + 2 NA intron (NM_198566, intron 6 of 12) intron (NM_198566, intron 6 of 12) 12914 NM_198566 375444 Hs.661641 NM_198566 ENSG00000172244 C5orf34 - chromosome 5 open reading frame 34 protein-coding 547-53 chr12 115550461 115550840 + 2 NA Intergenic Intergenic 598004 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 580-24 chr10 131603345 131603839 + 2 NA Intergenic L1MB3|LINE|L1 186607 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 263-322 chr5 40490256 40490424 + 2 NA Intergenic MIR3|SINE|MIR -189575 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 298-350 chr5 3682142 3682397 + 2 NA Intergenic Intergenic 86437 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 448-92 chr16 22625628 22626011 + 2 NA Intergenic MLT2B1|LTR|ERVL 80121 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 293-255 chr3 28893251 28893510 + 2 NA Intergenic Intergenic 318102 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 388-332 chr7 90010969 90011228 + 2 NA intron (NR_110029, intron 2 of 2) MLT1K|LTR|ERVL-MaLR -108302 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 175-5 chr1 71655338 71655503 + 2 NA intron (NM_173808, intron 4 of 6) intron (NM_173808, intron 4 of 6) 181592 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 394-104 chr14 62496405 62496665 + 2 NA Intergenic Intergenic -356562 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 389-255 chr4 32942730 32943004 + 2 NA Intergenic AluSz|SINE|Alu 591829 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 314-189 chr15 62612348 62612594 + 2 NA Intergenic Intergenic 32710 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 196-37 chr10 99996988 99997140 + 2 NA intron (NM_015221, intron 1 of 16) intron (NM_015221, intron 1 of 16) 12883 NM_015221 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 226-361 chr8 132836979 132837154 + 2 NA intron (NM_001277196, intron 15 of 19) intron (NM_001277196, intron 15 of 19) -29892 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 633-6 chr1 181879979 181880548 + 2 NA Intergenic L1PBa|LINE|L1 181449 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 191-200 chr7 45890881 45891030 + 2 NA intron (NM_000596, intron 2 of 3) intron (NM_000596, intron 2 of 3) 2467 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 455-291 chr8 139501135 139501411 + 2 NA Intergenic Intergenic 201850 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 138-10 chr11 34060785 34060884 + 2 NA intron (NM_005898, intron 2 of 18) intron (NM_005898, intron 2 of 18) 9103 NM_203364 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 689-10 chr10 26436898 26437459 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -1163 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 315-149 chr15 57417414 57417578 + 2 NA intron (NM_032866, intron 1 of 18) AluSz6|SINE|Alu 40991 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 250-53 chr10 113334523 113334703 + 2 NA Intergenic L1MC5|LINE|L1 205342 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 303-377 chr5 132925981 132926281 + 2 NA intron (NM_014423, intron 5 of 20) intron (NM_014423, intron 5 of 20) 37503 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 658-138 chrX 122607404 122607951 + 2 NA Intergenic L1M1|LINE|L1 -576566 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 261-80 chr12 72169384 72169549 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -103283 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 215-133 chr19 36766645 36766797 + 2 NA intron (NM_001267779, intron 1 of 3) intron (NM_001267779, intron 1 of 3) 6086 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 255-250 chr3 10578134 10578312 + 2 NA intron (NM_001353564, intron 1 of 20) L1ME3|LINE|L1 41738 NM_001353564 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 254-184 chr2 76170633 76170870 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -459836 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 563-22 chr10 76039173 76039566 + 2 NA intron (NM_001305581, intron 3 of 6) intron (NM_001305581, intron 3 of 6) 256608 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 273-355 chr5 54254226 54254378 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 56271 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 427-288 chrX 69704148 69704443 + 2 NA intron (NM_001005613, intron 2 of 2) MER4D1|LTR|ERV1 88182 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 402-97 chr15 70485163 70485405 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 20644 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 374-171 chr2 12846294 12846554 + 2 NA Intergenic MIRb|SINE|MIR 109057 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 261-16 chr1 95095376 95095623 + 2 NA intron (NM_001199679, intron 1 of 6) AluSc8|SINE|Alu 2982 NM_001199679 148534 Hs.483512 NM_152487 ENSG00000152078 TLCD4 TMEM56 TLC domain containing 4 protein-coding 684-20 chr11 4623511 4624023 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -15536 NM_001304496 55128 Hs.523438 NM_018073 ENSG00000167333 TRIM68 GC109|RNF137|SS-56|SS56 tripartite motif containing 68 protein-coding 573-54 chr12 92512712 92513238 + 2 NA Intergenic Intergenic 46296 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 491-68 chr14 57097617 57098055 + 2 NA Intergenic Intergenic 171069 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 223-163 chr2 128335492 128335707 + 2 NA Intergenic L1ME2|LINE|L1 -16731 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 353-355 chr4 18290990 18291277 + 2 NA Intergenic MIRb|SINE|MIR -269258 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 381-38 chr10 17555063 17555403 + 2 NA Intergenic (ATATGAT)n|Simple_repeat|Simple_repeat 62141 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 439-269 chr7 78084925 78085270 + 2 NA intron (NM_001301128, intron 19 of 20) intron (NM_001301128, intron 19 of 20) 244967 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 229-180 chr2 51018303 51018470 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 13746 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 284-227 chr20 6868282 6868451 + 2 NA Intergenic Intergenic 100680 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 408-73 chr12 2381940 2382287 + 2 NA intron (NM_199460, intron 3 of 49).2 Charlie4a|DNA|hAT-Charlie 112337 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 138-39 chr2 64966904 64967038 + 2 NA Intergenic Intergenic -21508 NM_001193493 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 295-40 chr10 15406360 15406615 + 2 NA Intergenic Intergenic -35198 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 343-452 chr5 153480514 153480701 + 2 NA Intergenic Intergenic -9917 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 478-208 chr4 61930227 61930683 + 2 NA intron (NM_001322246, intron 12 of 25) intron (NM_001322246, intron 12 of 25) 231310 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 224-302 chr7 82906385 82906560 + 2 NA intron (NM_033026, intron 8 of 24) intron (NM_033026, intron 8 of 24) 256412 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 224-47 chr11 70919921 70920109 + 2 NA intron (NM_012309, intron 9 of 24) MIRb|SINE|MIR -47647 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 243-353 chr5 45311317 45311462 + 2 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 384991 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 337-20 chr1 112100296 112100521 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 109872 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 362-79 chr10 118486745 118487094 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 108729 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 287-330 chr5 124471486 124471766 + 2 NA Intergenic Intergenic -33106 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 204-4 chr1 71301157 71301262 + 2 NA Intergenic Intergenic 219885 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 357-452 chr8 116223168 116223470 + 2 NA intron (NR_046215, intron 4 of 13) L2a|LINE|L2 101740 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 331-252 chr2 38678657 38678887 + 2 NA intron (NM_138801, intron 2 of 6) intron (NM_138801, intron 2 of 6) 12658 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 413-315 chr8 138053122 138053476 + 2 NA intron (NR_161374, intron 1 of 7) L1PA4|LINE|L1 30246 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 119-8 chr10 48370806 48370888 + 2 NA intron (NM_001323302, intron 3 of 13) L2|LINE|L2 -30765 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 486-250 chr5 150823754 150824084 + 2 NA Intergenic L1MA7|LINE|L1 -22602 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 180-65 chr18 1834034 1834161 + 2 NA Intergenic L1MCa|LINE|L1 -474468 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 210-107 chr19 27791947 27792095 + 2 NA intron (NR_027301, intron 2 of 2) L1MEf|LINE|L1 -1410 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 503-172 chr20 28808445 28808923 + 2 NA Intergenic ALR/Alpha|Satellite|centr -206019 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 844-37 chr2 105726560 105727256 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -18004 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 276-12 chr1 83820935 83821120 + 2 NA intron (NR_119374, intron 2 of 2) intron (NR_119374, intron 2 of 2) 39519 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 611-32 chr12 80960749 80961350 + 2 NA Intergenic L1MB7|LINE|L1 -23134 NM_004664 8825 Hs.144333 NM_004664 ENSG00000111052 LIN7A LIN-7A|LIN7|MALS-1|MALS1|TIP-33|VELI1 lin-7 homolog A, crumbs cell polarity complex component protein-coding 209-112 chr15 84846333 84846512 + 2 NA intron (NM_020778, intron 5 of 13) L1MEf|LINE|L1 29742 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 351-11 chr1 104163717 104163914 + 2 NA Intergenic Intergenic 90792 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 259-368 chr7 39481349 39481547 + 2 NA Intergenic L1MCa|LINE|L1 -75102 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 412-303 chr7 28327519 28327769 + 2 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 28323 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 562-203 chr7 45619930 45620330 + 2 NA intron (NM_001281768, intron 4 of 9) L1MB1|LINE|L1 45762 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 477-127 chr18 62480908 62481248 + 2 NA Intergenic L1PREC2|LINE|L1 -41947 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 263-82 chr12 42861054 42861287 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac 168954 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 344-377 chr5 26787040 26787363 + 2 NA Intergenic Intergenic 251385 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 498-146 chr2 225768269 225768578 + 2 NA Intergenic Intergenic 367537 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 206-281 chr9 24418723 24418917 + 2 NA Intergenic Intergenic 126856 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 225-112 chr16 35284193 35284360 + 2 NA Intergenic L1M4c|LINE|L1 -79140 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 371-161 chr2 40230175 40230505 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 199964 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 294-50 chr10 116875616 116875837 + 2 NA intron (NM_001242699, intron 10 of 13) intron (NM_001242699, intron 10 of 13) -26004 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 298-44 chr10 53811859 53812141 + 2 NA intron (NM_001142770, intron 32 of 34) intron (NM_001142770, intron 32 of 34) -674230 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 467-104 chr17 52861371 52861668 + 2 NA promoter-TSS (NR_146899) promoter-TSS (NR_146899) -602 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 437-16 chr10 9293577 9293893 + 2 NA intron (NR_120635, intron 2 of 4) L1MA8|LINE|L1 1858 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 507-99 chr16 60389608 60389971 + 2 NA Intergenic Intergenic -29996 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 292-50 chr10 80648870 80649034 + 2 NA promoter-TSS (NR_155749) promoter-TSS (NR_155749) -845 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 261-44 chr10 95912662 95912850 + 2 NA intron (NM_001349008, intron 2 of 34) intron (NM_001349008, intron 2 of 34) 4791 NM_001130446 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 549-72 chr16 27446899 27447430 + 2 NA TTS (NR_037158) TTS (NR_037158) 6229 NR_037158 283888 Hs.660935 NR_037158 ENSG00000259954 IL21R-AS1 - IL21R antisense RNA 1 ncRNA 494-90 chr17 31639410 31639853 + 2 NA Intergenic MER34C2|LTR|ERV1 64220 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 382-348 chr5 178813544 178813783 + 2 NA intron (NR_135095, intron 2 of 10) intron (NR_135095, intron 2 of 10) 4772 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 131-3 chr1 80499838 80499947 + 2 NA Intergenic Intergenic -35863 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 441-101 chr18 46951428 46951789 + 2 NA intron (NM_001353904, intron 3 of 13) HAL1|LINE|L1 4773 NM_001367621 83473 Hs.404137 NM_031303 ENSG00000167216 KATNAL2 - katanin catalytic subunit A1 like 2 protein-coding 350-198 chr19 9763413 9763694 + 2 NA intron (NM_001353799, intron 2 of 5) intron (NM_001353799, intron 2 of 5) 5185 NM_001353799 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 334-365 chr3 138337654 138337856 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -7904 NM_001349020 347736 Hs.660992 NM_178130 ENSG00000181322 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 238-270 chr4 70347885 70348079 + 2 NA Intergenic Intergenic -12778 NM_012390 26952 Hs.701334 NM_012390 ENSG00000109208 SMR3A P-B1|PBI|PRL5|PROL5 submaxillary gland androgen regulated protein 3A protein-coding 358-256 chr20 39582315 39582623 + 2 NA Intergenic L1M5|LINE|L1 -357721 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 1027-6 chr17 43603541 43604515 + 2 NA Intergenic L3|LINE|CR1 57535 NM_013999 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 383-255 chr3 119831520 119831833 + 2 NA intron (NM_001354596, intron 9 of 9) AluY|SINE|Alu 48966 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 319-363 chr4 39434596 39434802 + 2 NA exon (NM_175737, exon 2 of 5) exon (NM_175737, exon 2 of 5) 22789 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 244-111 chr15 92760706 92760887 + 2 NA Intergenic Intergenic -34688 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 361-394 chr6 117213406 117213633 + 2 NA Intergenic L1MA3|LINE|L1 -52039 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 348-141 chr14 65451677 65451940 + 2 NA intron (NR_038170, intron 1 of 10) LTR1D|LTR|ERV1 -19294 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 256-19 chr1 158291567 158291748 + 2 NA intron (NM_001765, intron 2 of 5) intron (NM_001765, intron 2 of 5) 1734 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 504-119 chr2 36614157 36614631 + 2 NA Intergenic Intergenic -16226 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 430-22 chr10 4425592 4425878 + 2 NA Intergenic MIRb|SINE|MIR 19266 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 292-408 chr7 41596188 41596407 + 2 NA Intergenic L1M4b|LINE|L1 -97622 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 185-153 chr4 143263472 143263595 + 2 NA Intergenic Intergenic -73343 NM_207123 2549 Hs.80720 NM_002039 ENSG00000109458 GAB1 DFNB26 GRB2 associated binding protein 1 protein-coding 330-161 chr14 66548490 66548759 + 2 NA intron (NM_001024218, intron 1 of 21) Tigger1|DNA|TcMar-Tigger 41217 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 325-322 chr21 30390875 30391133 + 2 NA Intergenic LTR1A1|LTR|ERV1 -5027 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 157-95 chr4 110049162 110049264 + 2 NA 3' UTR (NM_024090, exon 4 of 4) 3' UTR (NM_024090, exon 4 of 4) 136330 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 282-134 chr14 75758699 75758866 + 2 NA intron (NM_015072, intron 18 of 31) L1ME2z|LINE|L1 97536 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 207-274 chr7 88387136 88387312 + 2 NA Intergenic Intergenic -80330 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 303-397 chr6 62955974 62956147 + 2 NA Intergenic L1MA3|LINE|L1 363917 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 448-212 chr5 45942634 45942988 + 2 NA Intergenic ALR/Alpha|Satellite|centr -246431 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 139-76 chr5 151810684 151810795 + 2 NA 3' UTR (NM_005754, exon 12 of 12) 3' UTR (NM_005754, exon 12 of 12) -38563 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 238-194 chr2 211888328 211888495 + 2 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 537949 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 259-163 chr17 66077864 66078046 + 2 NA intron (NM_001302891, intron 6 of 24) L1PB|LINE|L1 113937 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 361-240 chr2 168540213 168540432 + 2 NA intron (NM_001256126, intron 1 of 10) THE1D|LTR|ERVL-MaLR -42621 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 301-183 chr19 36365205 36365443 + 2 NA intron (NM_001297619, intron 2 of 4) intron (NM_001297619, intron 2 of 4) 13877 NM_001297619 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 341-412 chr4 179939554 179939857 + 2 NA Intergenic Intergenic 1219444 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 285-121 chr14 61335613 61335864 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 14295 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 282-437 chr8 48258243 48258515 + 2 NA Intergenic Intergenic 249948 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 345-249 chr2 40261208 40261543 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 168929 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 320-552 chr8 88748220 88748454 + 2 NA Intergenic Intergenic -420854 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 467-212 chr5 8486342 8486722 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 25607 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 346-341 chr4 18773134 18773432 + 2 NA Intergenic L1PA16|LINE|L1 -751408 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 337-68 chr10 98914750 98915066 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 9660 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 336-532 chr8 4369442 4369703 + 2 NA intron (NM_033225, intron 3 of 69) L1PA16|LINE|L1 625342 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 309-558 chr8 120517254 120517486 + 2 NA intron (NM_022045, intron 18 of 21) intron (NM_022045, intron 18 of 21) 71951 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 483-14 chr1 172992659 172992983 + 2 NA Intergenic L2b|LINE|L2 58142 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 225-386 chr9 38303596 38303776 + 2 NA Intergenic AluSx|SINE|Alu -89016 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 140-16 chr11 81403892 81403995 + 2 NA Intergenic L1MEg|LINE|L1 486893 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 547-19 chr10 47091150 47091639 + 2 NA Intergenic Intergenic 179672 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 152-78 chr5 27811996 27812135 + 2 NA Intergenic Intergenic 339773 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 473-89 chr14 86168305 86168767 + 2 NA Intergenic MER70C|LTR|ERVL 233858 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 185-141 chr3 132833993 132834122 + 2 NA intron (NR_002811, intron 9 of 10) intron (NR_002811, intron 9 of 10) -111598 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 565-17 chr10 86276326 86276691 + 2 NA intron (NM_017551, intron 2 of 15) AluSx1|SINE|Alu -11720 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 357-327 chr5 6999801 7000080 + 2 NA Intergenic Intergenic -172019 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 387-135 chr16 72758944 72759309 + 2 NA Intergenic L1M4c|LINE|L1 -94156 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 372-291 chr21 20505072 20505369 + 2 NA Intergenic L1PA15-16|LINE|L1 -246535 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 349-33 chr1 207147604 207147837 + 2 NA Intergenic L1M1|LINE|L1 43487 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 192-63 chr14 52264717 52264901 + 2 NA Intergenic Intergenic -2889 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 244-6 chr1 45989187 45989393 + 2 NA intron (NM_001324320, intron 5 of 29) L1MC3|LINE|L1 124942 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 602-36 chr14_GL000225v1_random 18425 19017 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 458-143 chr2 156540997 156541278 + 2 NA intron (NM_000408, intron 6 of 16) MIR|SINE|MIR 104758 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 175-171 chr8 115395770 115395912 + 2 NA Intergenic Intergenic 272172 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 828-19 chr15 92217459 92217949 + 2 NA Intergenic Intergenic -176177 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 361-276 chr3 29000956 29001302 + 2 NA Intergenic L1PA16|LINE|L1 279810 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 364-239 chr2 208941527 208941818 + 2 NA Intergenic Intergenic 399030 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 252-112 chr14 37219346 37219545 + 2 NA intron (NM_001195296, intron 2 of 14) AluJo|SINE|Alu 21508 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 353-99 chr12 1180090 1180347 + 2 NA intron (NR_027948, intron 7 of 19) intron (NR_027948, intron 7 of 19) 152470 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 506-285 chr8 87785189 87785543 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 88649 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 421-245 chr5 87926560 87926923 + 2 NA Intergenic L1PA16|LINE|L1 264699 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 402-61 chr12 18314324 18314630 + 2 NA intron (NM_001288774, intron 6 of 32) MLT1A|LTR|ERVL-MaLR 52937 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 255-402 chr7 134714873 134715067 + 2 NA Intergenic Intergenic -64664 NM_033138 800 Hs.490203 NM_004342 ENSG00000122786 CALD1 CDM|H-CAD|HCAD|L-CAD|LCAD|NAG22 caldesmon 1 protein-coding 261-154 chr18 4674245 4674459 + 2 NA Intergenic Intergenic -219045 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 203-114 chr2 98974747 98974875 + 2 NA Intergenic L1M4b|LINE|L1 -38586 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 417-136 chr2 74073134 74073527 + 2 NA intron (NM_001287491, intron 4 of 11) L1ME1|LINE|L1 70638 NM_001366022 200424 Hs.208546 NM_001287491 ENSG00000187605 TET3 hCG_40738 tet methylcytosine dioxygenase 3 protein-coding 334-513 chr8 4496821 4497010 + 2 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 497999 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 357-118 chr14 70332981 70333182 + 2 NA intron (NM_001202549, intron 3 of 4) L1M1|LINE|L1 26602 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 220-235 chr3 97156568 97156769 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -282939 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 243-9 chr1 67664925 67665069 + 2 NA Intergenic Intergenic -20204 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 241-79 chr12 10042146 10042356 + 2 NA intron (NM_207345, intron 2 of 8) intron (NM_207345, intron 2 of 8) 11569 NM_207345 283420 Hs.531189 NM_207345 ENSG00000197992 CLEC9A CD370|DNGR-1|DNGR1|UNQ9341 C-type lectin domain containing 9A protein-coding 292-243 chr2 205151067 205151270 + 2 NA intron (NM_152526, intron 10 of 21) L1P2|LINE|L1 -531332 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 265-235 chr3 27868968 27869160 + 2 NA Intergenic L1MA8|LINE|L1 -34928 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 751-50 chr4 45114016 45114744 + 2 NA Intergenic Intergenic -387746 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 405-192 chr22 32013572 32013910 + 2 NA intron (NR_149128, intron 4 of 4) L1M4c|LINE|L1 -29520 NM_000343 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 419-46 chr11 6162697 6162994 + 2 NA Intergenic L1MA2|LINE|L1 7481 NM_001004052 255725 Hs.690457 NM_001004052 ENSG00000255307 OR52B2 OR11-70 olfactory receptor family 52 subfamily B member 2 protein-coding 270-271 chr4 85097539 85097717 + 2 NA Intergenic L1MD2|LINE|L1 130144 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 316-386 chr4 36843498 36843744 + 2 NA Intergenic L2a|LINE|L2 -158158 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 173-25 chr12 73233536 73233651 + 2 NA Intergenic L1MA5|LINE|L1 74403 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 409-189 chr22 35038230 35038572 + 2 NA Intergenic Intergenic -27757 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 327-372 chr4 105729007 105729311 + 2 NA intron (NM_001370181, intron 4 of 11) intron (NM_001370181, intron 4 of 11) 18346 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 417-113 chr18 11232569 11232928 + 2 NA Intergenic Intergenic -83986 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 358-430 chr7 28948834 28949089 + 2 NA Intergenic Intergenic 9369 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 341-517 chr8 59842653 59842933 + 2 NA Intergenic L1ME1|LINE|L1 438607 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 461-252 chr7 56282838 56283191 + 2 NA Intergenic L1MD2|LINE|L1 165361 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 166-74 chr3 83595922 83596073 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 1273578 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 282-488 chr9 78851298 78851528 + 2 NA Intergenic L1MDa|LINE|L1 294253 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 204-113 chr16 79814645 79814801 + 2 NA Intergenic Intergenic 19474 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 314-595 chr9 246877 247068 + 2 NA intron (NM_203447, intron 1 of 47) intron (NM_203447, intron 1 of 47) -26074 NM_001190458 81704 Hs.132599 NM_203447 ENSG00000107099 DOCK8 HEL-205|MRD2|ZIR8 dedicator of cytokinesis 8 protein-coding 480-249 chr6 47726353 47726767 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 27980 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 419-214 chr4 136816519 136816853 + 2 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -377070 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 305-528 chr8 51152620 51152837 + 2 NA Intergenic Intergenic 656717 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 259-91 chr12 82034769 82034946 + 2 NA Intergenic L1MEg|LINE|L1 81138 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 504-278 chr9 103329987 103330326 + 2 NA Intergenic (ATTCAT)n|Simple_repeat|Simple_repeat -5123 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 631-118 chr7 72468337 72468909 + 2 NA Intergenic L1MB5|LINE|L1 -21480 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 388-251 chr4 62631617 62631854 + 2 NA Intergenic LTR22B|LTR|ERVK -469970 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 294-420 chr6 144381393 144381588 + 2 NA intron (NM_007124, intron 1 of 73) L1PA13|LINE|L1 -24165 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 127-5 chr1 95661031 95661116 + 2 NA Intergenic MIRb|SINE|MIR 150957 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 556-208 chr7 71379936 71380462 + 2 NA intron (NM_022479, intron 2 of 10) L2|LINE|L2 -72429 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 300-365 chr5 76238556 76238766 + 2 NA intron (NM_014979, intron 4 of 12) intron (NM_014979, intron 4 of 12) 155278 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 519-249 chr9 35994956 35995356 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -37002 NM_019897 56656 Hs.553540 NM_019897 ENSG00000278889 OR2S2 OR37A|OST715 olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) protein-coding 353-379 chr4 85596119 85596352 + 2 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) 121085 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 337-268 chr2 120582487 120582684 + 2 NA Intergenic HAL1|LINE|L1 -116236 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 470-147 chr2 218104451 218104799 + 2 NA Intergenic L1PA5|LINE|L1 -20669 NM_001168298 3579 Hs.846 NM_001557 ENSG00000180871 CXCR2 CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB C-X-C motif chemokine receptor 2 protein-coding 547-86 chr18 61625164 61625481 + 2 NA Intergenic MER4E1|LTR|ERV1 -122854 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 255-465 chr9 118738135 118738307 + 2 NA intron (NR_151725, intron 2 of 3) intron (NR_151725, intron 2 of 3) 58550 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 356-152 chr14 72725989 72726276 + 2 NA intron (NM_001280544, intron 4 of 9) intron (NM_001280544, intron 4 of 9) 166517 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 250-186 chr19 53354670 53354850 + 2 NA 3' UTR (NM_138374, exon 4 of 4) 3' UTR (NM_138374, exon 4 of 4) -10945 NR_145445 170958 Hs.352638 NM_001348156 ENSG00000203326 ZNF525 - zinc finger protein 525 protein-coding 237-247 chr3 96220457 96220610 + 2 NA Intergenic Intergenic -139431 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 198-50 chr12 17390593 17390731 + 2 NA Intergenic Intergenic 198416 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 334-204 chr17 12831275 12831515 + 2 NA intron (NM_001321164, intron 1 of 20) MER67B|LTR|ERV1 -41111 NR_104607 100128006 Hs.567641 NR_104607 ENSG00000265489 LOC100128006 - uncharacterized LOC100128006 ncRNA 364-404 chr7 8068389 8068596 + 2 NA intron (NM_138426, intron 5 of 7) L1PA15|LINE|L1 99696 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 417-285 chr8 86250700 86250987 + 2 NA Intergenic L1MA1|LINE|L1 -20462 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 419-138 chr2 58369214 58369590 + 2 NA Intergenic L2a|LINE|L2 93525 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 239-354 chr6 66332791 66332970 + 2 NA Intergenic L1ME2|LINE|L1 545001 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 446-332 chrX 50290771 50291077 + 2 NA intron (NM_033670, intron 3 of 7) intron (NM_033670, intron 3 of 7) 6382 NM_033670 85417 Hs.130310 NM_033031 ENSG00000147082 CCNB3 - cyclin B3 protein-coding 330-568 chrX 130735531 130735760 + 2 NA intron (NM_182314, intron 3 of 15) intron (NM_182314, intron 3 of 15) -66991 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 240-85 chr11 84077522 84077715 + 2 NA intron (NM_001142699, intron 10 of 27) Charlie2b|DNA|hAT-Charlie 195662 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 350-396 chr5 62962913 62963208 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 384241 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 319-499 chr7 45193198 45193511 + 2 NA Intergenic L1M4b|LINE|L1 35563 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 717-39 chr2 15759608 15760086 + 2 NA Intergenic AluSz6|SINE|Alu 69065 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 355-374 chr4 100493361 100493596 + 2 NA intron (NM_001159694, intron 1 of 10) Charlie23a|DNA|hAT-Charlie 24544 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 418-165 chr3 111392013 111392407 + 2 NA Intergenic L1MA4A|LINE|L1 -149987 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 244-83 chr14 20161825 20162014 + 2 NA Intergenic L1M5|LINE|L1 18183 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 290-17 chr1 94575461 94575684 + 2 NA Intergenic L1PA11|LINE|L1 31870 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 290-360 chr5 114944371 114944535 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -171040 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 324-464 chr6 67701624 67701874 + 2 NA Intergenic Intergenic -353602 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 398-121 chr15 87224025 87224410 + 2 NA Intergenic L2a|LINE|L2 -235791 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 523-112 chr18 27640257 27640720 + 2 NA Intergenic Intergenic -297832 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 466-19 chr1 214948480 214948882 + 2 NA Intergenic Intergenic -56861 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 349-373 chr4 66267310 66267490 + 2 NA Intergenic L1PA8A|LINE|L1 -9424 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 272-379 chr6 39708037 39708264 + 2 NA intron (NM_001351503, intron 3 of 3) intron (NM_001351503, intron 3 of 3) 17258 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 281-165 chr17 59361233 59361399 + 2 NA intron (NM_001005404, intron 2 of 4) intron (NM_001005404, intron 2 of 4) -4767 NR_039882 100616204 NR_039882 ENSG00000263857 MIR4729 - microRNA 4729 ncRNA 188-179 chr6 51353182 51353312 + 2 NA Intergenic Intergenic -268623 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 353-160 chr15 61678110 61678380 + 2 NA Intergenic Intergenic -51673 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 333-156 chr14 83212496 83212733 + 2 NA Intergenic L1ME1|LINE|L1 569982 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 319-324 chr3 23774994 23775239 + 2 NA Intergenic Intergenic -30839 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 375-92 chr12 18343477 18343697 + 2 NA intron (NM_001288774, intron 10 of 32) intron (NM_001288774, intron 10 of 32) 82047 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 494-301 chr8 137659396 137659780 + 2 NA Intergenic Intergenic -246000 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 321-565 chr8 104330455 104330651 + 2 NA Intergenic MIRb|SINE|MIR -9243 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 359-89 chr11 56682227 56682503 + 2 NA Intergenic L1M1|LINE|L1 -18023 NM_001013358 504191 NM_001013358 OR9G9 OR9G1 olfactory receptor family 9 subfamily G member 9 protein-coding 553-132 chr2 154316176 154316627 + 2 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 141037 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 308-421 chr6 69840331 69840574 + 2 NA Intergenic L1MA9|LINE|L1 -26104 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 475-260 chr7 40895412 40895736 + 2 NA Intergenic L1M4c|LINE|L1 84365 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 480-15 chr1 198826509 198826920 + 2 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) 32268 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 233-378 chr8 108795573 108795775 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -8080 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 377-66 chr11 48662637 48662935 + 2 NA Intergenic ALR/Alpha|Satellite|centr 173993 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 418-189 chr4 94427727 94428017 + 2 NA Intergenic AluJo|SINE|Alu -23985 NR_046186 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 279-14 chr1 95668440 95668606 + 2 NA Intergenic L1ME2|LINE|L1 158407 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 369-182 chr2 5797479 5797776 + 2 NA Intergenic Intergenic 14969 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 207-204 chr3 182615575 182615739 + 2 NA Intergenic Intergenic -108533 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 230-327 chr6 143729379 143729560 + 2 NA intron (NM_001100165, intron 2 of 11) L1MD2|LINE|L1 51504 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 345-247 chr2 34939003 34939209 + 2 NA Intergenic Intergenic 261549 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 430-18 chr1 218123275 218123699 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 79982 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 344-93 chr11 115096082 115096274 + 2 NA Intergenic L1MC3|LINE|L1 -237399 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 467-154 chr20 43421397 43421677 + 2 NA Intergenic L1M2c|LINE|L1 -36359 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 253-147 chr16 21242981 21243185 + 2 NA intron (NM_145865, intron 1 of 1) intron (NM_145865, intron 1 of 1) 9384 NM_145865 257629 Hs.115959 NM_145865 ENSG00000175311 ANKS4B HARP ankyrin repeat and sterile alpha motif domain containing 4B protein-coding 243-259 chr20 59092083 59092281 + 2 NA Intergenic Intergenic -49336 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 476-200 chr4 97579359 97579781 + 2 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 212644 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 499-18 chr1 234946078 234946565 + 2 NA Intergenic AluSx1|SINE|Alu 17678 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 520-249 chr5 162233728 162234216 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 166330 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 128-50 chr5 73725794 73725896 + 2 NA intron (NM_001177693, intron 2 of 35) intron (NM_001177693, intron 2 of 35) -87701 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 548-4 chr1 66680795 66681181 + 2 NA intron (NM_001350218, intron 13 of 22) intron (NM_001350218, intron 13 of 22) 52548 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 511-16 chr1 238317891 238318232 + 2 NA Intergenic Intergenic 167956 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 281-98 chr12 125804360 125804598 + 2 NA Intergenic L2a|LINE|L2 178895 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 493-231 chr4 187385087 187385518 + 2 NA intron (NR_038931, intron 1 of 4) L1MB8|LINE|L1 14654 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 499-177 chr3 194455216 194455539 + 2 NA intron (NM_001367549, intron 8 of 33) MIRc|SINE|MIR 12862 NM_024524 79572 Hs.529609 NM_024524 ENSG00000133657 ATP13A3 AFURS1 ATPase 13A3 protein-coding 428-228 chr5 44165703 44166106 + 2 NA Intergenic L1PA15|LINE|L1 -222828 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 312-91 chr11 129226776 129227039 + 2 NA Intergenic L1M4|LINE|L1 -34709 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 214-285 chr6 120754856 120755009 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 579548 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 506-229 chr5 77937198 77937561 + 2 NA intron (NR_105012, intron 1 of 1) L1MB5|LINE|L1 -20868 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 360-314 chr3 145544188 145544438 + 2 NA Intergenic L1PB3|LINE|L1 524872 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 1199-12 chr20 33889931 33890914 + 2 NA Intergenic L1MCa|LINE|L1 79074 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 545-213 chr6 152732066 152732361 + 2 NA Intergenic Intergenic -18584 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 276-336 chr4 67201883 67202145 + 2 NA Intergenic L2a|LINE|L2 219986 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 388-215 chr3 4375280 4375498 + 2 NA intron (NM_001164675, intron 7 of 7) MER5B|DNA|hAT-Charlie 72085 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 449-28 chr10 23560641 23561014 + 2 NA Intergenic AluJo|SINE|Alu 121558 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 205-36 chr10 65535963 65536118 + 2 NA Intergenic L1M5|LINE|L1 -35385 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 181-52 chr16 80787048 80787194 + 2 NA intron (NM_152342, intron 1 of 6) L2c|LINE|L2 17477 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 582-117 chr5 3634894 3635252 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 39241 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 237-371 chr8 59031983 59032194 + 2 NA intron (NM_014729, intron 1 of 8) L2a|LINE|L2 87059 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 284-243 chr21 27742707 27742984 + 2 NA intron (NR_024357, intron 1 of 3) L1MA2|LINE|L1 20466 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 246-353 chr6 121142393 121142576 + 2 NA intron (NR_104452, intron 27 of 35) intron (NR_104452, intron 27 of 35) 191996 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 306-140 chr14 33809627 33809886 + 2 NA Intergenic Intergenic 100819 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 221-175 chr3 3718764 3718917 + 2 NA intron (NR_149025, intron 5 of 5) intron (NR_149025, intron 5 of 5) -80591 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 167-75 chr22 28764865 28764995 + 2 NA Intergenic MER68|LTR|ERVL -7744 NM_001284264 150275 Hs.406460 NM_173510 ENSG00000159873 CCDC117 dJ366L4.1 coiled-coil domain containing 117 protein-coding 266-433 chr8 118641725 118641904 + 2 NA intron (NR_038210, intron 2 of 4) L1MC5a|LINE|L1 -19851 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 323-598 chrX 80129433 80129608 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 106460 NM_001303475 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 305-337 chr3 7948903 7949145 + 2 NA Intergenic L1MEc|LINE|L1 67283 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 344-305 chr3 26701371 26701582 + 2 NA intron (NM_001317811, intron 2 of 2) LTR78|LTR|ERV1 6919 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 226-247 chr4 30001233 30001410 + 2 NA Intergenic Intergenic -719048 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 324-190 chr15 93478465 93478682 + 2 NA Intergenic L2c|LINE|L2 272507 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 375-241 chr20 42352076 42352416 + 2 NA exon (NM_007050, exon 10 of 31) exon (NM_007050, exon 10 of 31) -333237 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 283-57 chr10 67326472 67326714 + 2 NA intron (NM_001127384, intron 5 of 17) L1PA13|LINE|L1 76817 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 342-82 chr10 116625296 116625593 + 2 NA intron (NR_103727, intron 3 of 12) Charlie4a|DNA|hAT-Charlie 4491 NM_005396 5408 Hs.423598 NM_005396 ENSG00000266200 PNLIPRP2 PLRP2 pancreatic lipase related protein 2 (gene/pseudogene) protein-coding 206-39 chr10 91658386 91658548 + 2 NA Intergenic L1ME1|LINE|L1 -25396 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 424-42 chr11 62342573 62342967 + 2 NA intron (NM_025080, intron 2 of 6) AluSz6|SINE|Alu 5322 NM_001083926 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 355-225 chr2 7216919 7217254 + 2 NA Intergenic Intergenic -139206 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 507-47 chr11 20008980 20009356 + 2 NA intron (NM_182964, intron 11 of 37) MIR3|SINE|MIR -13388 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 372-444 chr6 146751769 146751973 + 2 NA intron (NM_024694, intron 26 of 35) intron (NM_024694, intron 26 of 35) 51953 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 303-512 chrX 151850227 151850476 + 2 NA Intergenic L1MA9|LINE|L1 60732 NR_136578 105373368 Hs.256904 NR_136578 MAGEA4-AS1 - MAGEA4 antisense RNA 1 ncRNA 120-46 chr7 28779321 28779404 + 2 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 93229 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 343-312 chr21 26915094 26915300 + 2 NA Intergenic Intergenic -38764 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 284-288 chr4 71856446 71856647 + 2 NA Intergenic MER4B-int|LTR|ERV1 -51026 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 354-119 chr13 63634892 63635137 + 2 NA Intergenic Intergenic -102421 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 406-180 chr3 6755196 6755506 + 2 NA intron (NR_110125, intron 2 of 3) L1MA6|LINE|L1 50098 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 364-35 chr1 213875172 213875406 + 2 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -49460 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 332-193 chr17 10825849 10826075 + 2 NA intron (NM_001101387, intron 1 of 1) AluSx1|SINE|Alu 12125 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 225-370 chr8 122185183 122185359 + 2 NA Intergenic Intergenic 383373 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 327-196 chr17 54359012 54359228 + 2 NA Intergenic L1MDa|LINE|L1 536193 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 247-64 chr11 83809953 83810186 + 2 NA intron (NM_001142699, intron 17 of 27) intron (NM_001142699, intron 17 of 27) -127644 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 493-318 chr9 106801938 106802396 + 2 NA Intergenic Intergenic -60999 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 248-446 chrX 123892630 123892797 + 2 NA intron (NM_001167, intron 4 of 6) intron (NM_001167, intron 4 of 6) 32546 NM_001167 331 Hs.356076 NM_001167 ENSG00000101966 XIAP API3|BIRC4|IAP-3|ILP1|MIHA|XLP2|hIAP-3|hIAP3 X-linked inhibitor of apoptosis protein-coding 420-260 chr6 136703025 136703371 + 2 NA intron (NM_005923, intron 3 of 29) intron (NM_005923, intron 3 of 29) 74084 NR_125858 101928461 Hs.666518 NR_125858 LOC101928461 - uncharacterized LOC101928461 ncRNA 255-388 chr7 53623777 53623969 + 2 NA Intergenic Intergenic 188058 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 701-31 chr17 28260931 28261557 + 2 NA Intergenic LTR46|LTR|ERV1 13800 NR_002181 23614 Hs.744962 NR_002181 ENSG00000265060 PPY2P PPY2 pancreatic polypeptide 2, pseudogene pseudo 215-39 chr10 80964490 80964690 + 2 NA Intergenic Intergenic 314793 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 280-221 chr2 193817877 193818112 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -526275 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 474-144 chr2 108426311 108426769 + 2 NA Intergenic L1MC5a|LINE|L1 -22666 NM_181453 9648 Hs.436505 NM_181453 ENSG00000135968 GCC2 GCC185|RANBP2L4|REN53 GRIP and coiled-coil domain containing 2 protein-coding 346-278 chr20 137387 137578 + 2 NA Intergenic Intergenic -5108 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 179-77 chr4 34358524 34358670 + 2 NA Intergenic MER50-int|LTR|ERV1 -88850 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 304-209 chr18 44306869 44307142 + 2 NA Intergenic Intergenic 224692 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 687-71 chr22 33224910 33225474 + 2 NA Intergenic Intergenic 116663 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 446-269 chr6 113564095 113564458 + 2 NA Intergenic Intergenic 85799 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 556-65 chr14 68208579 68209034 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 385214 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 140-49 chr3 112959604 112959698 + 2 NA intron (NM_138806, intron 1 of 7) intron (NM_138806, intron 1 of 7) 15452 NM_138940 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 286-418 chr7 46314185 46314352 + 2 NA Intergenic L1MA5|LINE|L1 382854 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 254 chr1 7033979 7034193 + 2 NA intron (NM_001349608, intron 2 of 21) L1MEc|LINE|L1 248632 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 317-434 chr6 165201840 165202095 + 2 NA Intergenic L1PA15|LINE|L1 107638 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 302-96 chr12 19103782 19104033 + 2 NA Intergenic Intergenic -25826 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 353-454 chr6 65682093 65682432 + 2 NA intron (NM_001292009, intron 1 of 43) LTR40a|LTR|ERVL 24963 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 277-363 chr6 152010441 152010671 + 2 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 157731 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 377-307 chr5 12479207 12479548 + 2 NA Intergenic L1MEg|LINE|L1 -95480 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 304-87 chr11 88538552 88538777 + 2 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 34088 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 690-34 chr14 47504004 47504542 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -161027 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 495-136 chr20 53812681 53813133 + 2 NA Intergenic Intergenic 62802 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 308-314 chr3 194719200 194719447 + 2 NA intron (NR_037891, intron 1 of 3) intron (NR_037891, intron 1 of 3) 10902 NR_037891 100507391 Hs.590099 NR_037891 ENSG00000237222 LINC01968 - long intergenic non-protein coding RNA 1968 ncRNA 214-193 chr21 30184533 30184712 + 2 NA Intergenic Intergenic -17817 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 273-275 chr22 22717753 22717977 + 2 NA Intergenic Intergenic 71553 NM_199127 91227 Hs.450000 NM_080839 ENSG00000100121 GGTLC2 GGTL4 gamma-glutamyltransferase light chain 2 protein-coding 614-45 chr18 78848795 78849267 + 2 NA Intergenic Intergenic -131244 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 617-42 chr15 27116994 27117520 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 44062 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 357-123 chr14 97661991 97662196 + 2 NA intron (NR_033943, intron 2 of 3) intron (NR_033943, intron 2 of 3) 24565 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 210-173 chr3 63362439 63362617 + 2 NA intron (NM_001130003, intron 2 of 5) L2c|LINE|L2 -80784 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 302-97 chr12 19613608 19613804 + 2 NA Intergenic Intergenic 173107 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 320-365 chr3 154681246 154681422 + 2 NA Intergenic L2c|LINE|L2 -251144 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 205-27 chr10 16384555 16384716 + 2 NA Intergenic Intergenic -52308 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 250-366 chr5 161604685 161604873 + 2 NA Intergenic MamRep1894|DNA|hAT -56375 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 416-319 chr7 91661219 91661549 + 2 NA Intergenic L1MA7|LINE|L1 219318 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 336-519 chr7 57278674 57278931 + 2 NA Intergenic Intergenic -56628 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 364-203 chr2 34152641 34152906 + 2 NA intron (NR_126403, intron 4 of 5) Tigger2|DNA|TcMar-Tigger 85547 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 311-68 chr10 105752828 105753081 + 2 NA intron (NR_120625, intron 3 of 3) ERVL-int|LTR|ERVL 67379 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 240-86 chr11 84917190 84917324 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 6164 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 427-259 chr8 92180612 92180942 + 2 NA Intergenic L1MC2|LINE|L1 -77392 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 322-282 chr2 204386973 204387244 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -158367 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 280-248 chr3 17292247 17292450 + 2 NA intron (NM_014744, intron 14 of 21) intron (NM_014744, intron 14 of 21) 359152 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 267-215 chr2 179538954 179539135 + 2 NA intron (NR_104234, intron 4 of 12) intron (NR_104234, intron 4 of 12) 23544 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 229-225 chr20 42335707 42335880 + 2 NA intron (NM_133170, intron 11 of 31) intron (NM_133170, intron 11 of 31) -349690 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 418-230 chr5 174764761 174765112 + 2 NA Intergenic AluSc|SINE|Alu 13202 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 389-93 chr13 64949445 64949720 + 2 NA Intergenic L1M5|LINE|L1 -873571 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 559-26 chr11 100017660 100018073 + 2 NA intron (NM_001243270, intron 8 of 23) intron (NM_001243270, intron 8 of 23) 461721 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 504-168 chr3 46742819 46743155 + 2 NA non-coding (NR_160553, exon 3 of 4) non-coding (NR_160553, exon 3 of 4) 1768 NR_160553 377047 Hs.667712 NM_199183 ENSG00000188086 PRSS45P PRSS45|TESPL|TESSP5 serine protease 45, pseudogene pseudo 213-112 chr17 33946647 33946786 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 210090 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 274-16 chr1 117771332 117771543 + 2 NA Intergenic L1M3a|LINE|L1 158184 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 280-391 chr7 101409181 101409384 + 2 NA intron (NM_133457, intron 1 of 12) intron (NM_133457, intron 1 of 12) 46407 NM_001278563 136227 Hs.654854 NM_133457 ENSG00000160963 COL26A1 EMI6|EMID2|EMU2|SH2B collagen type XXVI alpha 1 chain protein-coding 311-208 chr18 4577383 4577690 + 2 NA Intergenic L1PB4|LINE|L1 -122229 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 730-69 chr7 1366141 1366536 + 2 NA Intergenic Intergenic 93132 NM_182924 79778 Hs.376617 NM_024723 ENSG00000164877 MICALL2 JRAB|MICAL-L2 MICAL like 2 protein-coding 485-174 chr3 3302399 3302801 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -122883 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 258-347 chr6 90027218 90027432 + 2 NA intron (NM_021813, intron 5 of 8) intron (NM_021813, intron 5 of 8) 132856 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 350-416 chr5 136063195 136063512 + 2 NA 3' UTR (NM_000358, exon 17 of 17) 3' UTR (NM_000358, exon 17 of 17) 17245 NR_030583 100126299 NR_030583 ENSG00000278815 VTRNA2-1 CBL-3|CBL3|MIR886|MIRN886|VTRNA2|hsa-mir-886|hvg-5|nc886|pre-miR-886|svtRNA2-1a vault RNA 2-1 ncRNA 366-277 chr3 77245858 77246154 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 147994 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 161-5 chr1 101640351 101640483 + 2 NA Intergenic MER31A|LTR|ERV1 206663 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 279-322 chr5 42638871 42639031 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 73087 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 460-269 chr7 22867301 22867576 + 2 NA Intergenic Intergenic 10825 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 303-261 chr21 20275929 20276100 + 2 NA Intergenic L1MB5|LINE|L1 -17329 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 279-5 chr1 39295255 39295471 + 2 NA intron (NM_012090, intron 18 of 92) intron (NM_012090, intron 18 of 92) -113710 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 543-64 chr12 77161234 77161600 + 2 NA Intergenic Eulor1|DNA|DNA -95848 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 291-331 chr4 142147340 142147536 + 2 NA intron (NM_001331040, intron 17 of 25) MIRc|SINE|MIR 510855 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 252-235 chr21 14785997 14786156 + 2 NA Intergenic L1ME1|LINE|L1 132592 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 298-421 chr7 18457296 18457489 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -38318 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 243-107 chr13 38011416 38011621 + 2 NA Intergenic Intergenic 131714 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 181-167 chr8 139558328 139558503 + 2 NA Intergenic Intergenic 144708 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 428-77 chr15 47338944 47339324 + 2 NA intron (NM_001198999, intron 1 of 19) MER21A|LTR|ERVL 155045 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 256-303 chr5 3842376 3842582 + 2 NA Intergenic Intergenic 246647 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 161-55 chr2 124670929 124671077 + 2 NA intron (NM_130773, intron 13 of 23) L2a|LINE|L2 645716 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 350-259 chr2 211259263 211259581 + 2 NA Intergenic Intergenic 641851 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 321-127 chr12 29978445 29978705 + 2 NA Intergenic Intergenic -193816 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 352-423 chr5 88721661 88721927 + 2 NA 3' UTR (NM_001364347, exon 11 of 11) 3' UTR (NM_001364347, exon 11 of 11) -30753 NR_152233 645323 Hs.12827 NR_015436 ENSG00000245526 LINC00461 ECONEXIN|EyeLinc1|VISC long intergenic non-protein coding RNA 461 ncRNA 430-92 chr15 33792167 33792531 + 2 NA intron (NM_001243996, intron 67 of 102) intron (NM_001243996, intron 67 of 102) -176148 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 381-250 chr3 69625871 69626159 + 2 NA Intergenic L1MA2|LINE|L1 -113449 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 319-541 chr8 113286508 113286698 + 2 NA intron (NM_001363185, intron 2 of 66) intron (NM_001363185, intron 2 of 66) 90549 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 505-330 chrX 84940299 84940722 + 2 NA Intergenic Intergenic 6359 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 234-372 chr7 78727934 78728126 + 2 NA intron (NM_001301128, intron 2 of 20) L2a|LINE|L2 -280958 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 355-96 chr11 82906749 82906981 + 2 NA intron (NM_001363481, intron 1 of 4) intron (NM_001363481, intron 1 of 4) -5125 NM_001319214 5547 Hs.523936 NM_005040 ENSG00000137509 PRCP HUMPCP|PCP prolylcarboxypeptidase protein-coding 338-447 chr5 125118608 125118817 + 2 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 81881 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 345-397 chr4 155207745 155207979 + 2 NA promoter-TSS (NM_000910) promoter-TSS (NM_000910) -774 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 205-283 chr8 120165133 120165331 + 2 NA intron (NM_021110, intron 4 of 47) intron (NM_021110, intron 4 of 47) 40130 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 169-76 chr3 78565475 78565612 + 2 NA Intergenic Intergenic 453916 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 443-53 chr11 55341918 55342287 + 2 NA Intergenic Intergenic -1099 NM_001005274 81327 Hs.554530 NM_001005274 ENSG00000181961 OR4A16 OR11-117|OR4A16Q olfactory receptor family 4 subfamily A member 16 protein-coding 269-37 chr10 17953627 17953779 + 2 NA intron (NM_001145195, intron 2 of 12) intron (NM_001145195, intron 2 of 12) 1785 NM_001145195 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 363-288 chr3 94137436 94137710 + 2 NA Intergenic Intergenic 74512 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 359-233 chr2 82342415 82342724 + 2 NA Intergenic L2a|LINE|L2 -514234 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 504-88 chr16 24501823 24502075 + 2 NA Intergenic AluSx4|SINE|Alu -37617 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 570-110 chr2 96234741 96235190 + 2 NA intron (NR_046322, intron 1 of 3) AluJb|SINE|Alu 20326 NR_145789 109623481 NR_145789 SNORA112 - small nucleolar RNA, H/ACA box 112 snoRNA 157-40 chr14 81594667 81594773 + 2 NA Intergenic Intergenic 28341 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 435-28 chr10 36397923 36398351 + 2 NA Intergenic Intergenic 619835 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 149-75 chr4 24178824 24178946 + 2 NA intron (NR_148982, intron 1 of 13) intron (NR_148982, intron 1 of 13) -288838 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 340-578 chr9 138110458 138110645 + 2 NA intron (NM_001243812, intron 38 of 45) AluJr|SINE|Alu -39562 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 360-155 chr16 26676562 26676861 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -390216 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 211-196 chr3 112451699 112451855 + 2 NA Intergenic Intergenic 47695 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 328-554 chr8 16704468 16704756 + 2 NA Intergenic Intergenic 297733 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 504-61 chr13 94542553 94542946 + 2 NA intron (NM_001322186, intron 1 of 9) intron (NM_001322186, intron 1 of 9) 6657 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 255-423 chr8 83598181 83598349 + 2 NA Intergenic Intergenic 194507 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 326-392 chr5 6255760 6256032 + 2 NA Intergenic Intergenic 81396 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 760-29 chr2 63831720 63832183 + 2 NA Intergenic Intergenic -9013 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 169-146 chr9 27390675 27390779 + 2 NA intron (NM_024761, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR -93577 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 493-130 chr19 37418377 37418718 + 2 NA intron (NM_001330482, intron 4 of 4) HAL1|LINE|L1 47448 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 281-358 chr5 51604425 51604594 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 221061 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 238-301 chr5 100405536 100405700 + 2 NA Intergenic Intergenic -17364 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 313-110 chr12 47195676 47195945 + 2 NA intron (NM_001281429, intron 2 of 2) HAL1|LINE|L1 7998 NR_039847 100616486 NR_039847 ENSG00000263838 MIR4698 - microRNA 4698 ncRNA 284-48 chr10 77742346 77742532 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -104631 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 497-223 chr5 37878086 37878419 + 2 NA Intergenic Intergenic 37814 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 357-202 chr2 67749133 67749404 + 2 NA Intergenic Intergenic 76294 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 221-255 chr5 165507786 165507908 + 2 NA Intergenic L1M4|LINE|L1 1037568 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 419-74 chr12 63456679 63456985 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 211661 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 316-211 chr17 61454174 61454407 + 2 NA intron (NM_001321120, intron 1 of 8) intron (NM_001321120, intron 1 of 8) 1868 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 233-345 chr6 135809090 135809239 + 2 NA Intergenic MIR|SINE|MIR -42537 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 642-63 chr20 8919640 8920251 + 2 NA Intergenic Intergenic 88760 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 252-53 chr10 111716049 111716227 + 2 NA Intergenic L1MCa|LINE|L1 467627 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 526-216 chr6 107638928 107639375 + 2 NA intron (NM_018013, intron 6 of 6) AluSz|SINE|Alu 92999 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 196-247 chr8 54294124 54294270 + 2 NA Intergenic Intergenic -36489 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 282-427 chr7 64930941 64931217 + 2 NA non-coding (NR_003099, exon 5 of 5) non-coding (NR_003099, exon 5 of 5) 27837 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 214-93 chr13 103869603 103869757 + 2 NA Intergenic Intergenic 444480 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 277-84 chr12 2593805 2594038 + 2 NA intron (NM_199460, intron 19 of 49).2 L1MEd|LINE|L1 78299 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 309-78 chr11 37513404 37513628 + 2 NA Intergenic L1MA4|LINE|L1 -425085 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 366-374 chr6 46462001 46462318 + 2 NA intron (NM_001251973, intron 1 of 4) intron (NM_001251973, intron 1 of 4) 29164 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 195-140 chr3 21311583 21311730 + 2 NA Intergenic L1MB7|LINE|L1 -94070 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 186-70 chr19 31634722 31634874 + 2 NA Intergenic Intergenic 42517 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 373-182 chr2 17045512 17045851 + 2 NA Intergenic Intergenic -379847 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 227-370 chr8 64130369 64130556 + 2 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 238096 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 615-52 chr18 8433144 8433494 + 2 NA Intergenic Intergenic -66285 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 305-440 chr5 87048486 87048764 + 2 NA Intergenic HERVL-int|LTR|ERVL 66329 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 182-25 chr11 29150611 29150744 + 2 NA Intergenic Intergenic -443736 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 229-56 chr11 14929607 14929827 + 2 NA Intergenic Intergenic -37512 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 390-340 chr6 139501839 139502111 + 2 NA Intergenic MER20|DNA|hAT-Charlie -27379 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 305-51 chr1 239701047 239701315 + 2 NA intron (NM_000740, intron 3 of 4) L3|LINE|CR1 17938 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 316-332 chr21 26955505 26955715 + 2 NA intron (NM_007038, intron 1 of 7) intron (NM_007038, intron 1 of 7) 1649 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 461-32 chr10 52615863 52616233 + 2 NA intron (NR_155748, intron 1 of 2) L2a|LINE|L2 139356 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 262-3 chr1 19505818 19505988 + 2 NA Intergenic Intergenic -20364 NM_004930 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 357-363 chr5 140091604 140091859 + 2 NA Intergenic HAL1|LINE|L1 16281 NR_102740 100505636 Hs.438871 NR_102739 ENSG00000245146 MALINC1 LINC01024|MA-linc1 mitosis associated long intergenic non-coding RNA 1 ncRNA 206-140 chr20 15959328 15959489 + 2 NA intron (NM_001351663, intron 12 of 17) intron (NM_001351663, intron 12 of 17) 26474 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 567-140 chr4 179657954 179658342 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 1501001 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 384-253 chr4 38279259 38279606 + 2 NA Intergenic Intergenic -87482 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 253-170 chr19 31927416 31927611 + 2 NA Intergenic L1PB3|LINE|L1 -98349 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 354-458 chr8 65350974 65351170 + 2 NA Intergenic L1PREC2|LINE|L1 -170732 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 260-174 chr17 68856675 68856859 + 2 NA Intergenic Intergenic 98625 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 171-143 chr9 4256902 4257004 + 2 NA intron (NM_001042413, intron 2 of 10) L1MA9|LINE|L1 43115 NM_001042413 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 533-211 chr7 14640034 14640415 + 2 NA intron (NM_001350722, intron 13 of 25) intron (NM_001350722, intron 13 of 25) 201226 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 210-317 chrX 95396398 95396591 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -333268 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 706-55 chr5 28490056 28490553 + 2 NA Intergenic MER74B|LTR|ERVL -202639 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 694-18 chr10 111489519 111490060 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 375498 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 372-315 chr3 9191491 9191850 + 2 NA promoter-TSS (NR_121663) promoter-TSS (NR_121663) -823 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 292-184 chr18 61985668 61985919 + 2 NA Intergenic Intergenic -92786 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 350-400 chr5 67349873 67350165 + 2 NA Intergenic Intergenic -153220 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 367-237 chr2 201502547 201502833 + 2 NA intron (NM_001168216, intron 11 of 12) L1MEc|LINE|L1 50950 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 338-584 chr9 31984202 31984438 + 2 NA Intergenic Intergenic -400283 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 196-272 chr9 89070104 89070236 + 2 NA intron (NM_016848, intron 5 of 11) Charlie18a|DNA|hAT-Charlie 78702 NM_005226 1903 Hs.585118 NM_005226 ENSG00000213694 S1PR3 EDG-3|EDG3|LPB3|S1P3 sphingosine-1-phosphate receptor 3 protein-coding 347-345 chr4 60322140 60322440 + 2 NA Intergenic L1PREC2|LINE|L1 -600329 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 277-274 chr3 148314192 148314414 + 2 NA intron (NR_146712, intron 3 of 4) intron (NR_146712, intron 3 of 4) 33412 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 232-94 chr14 45520218 45520447 + 2 NA Intergenic Intergenic 195270 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 310-236 chr2 65159309 65159588 + 2 NA Intergenic AluJb|SINE|Alu -29147 NM_015543 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 723-39 chr2 66968488 66969089 + 2 NA intron (NR_110169, intron 4 of 4) intron (NR_110169, intron 4 of 4) -46298 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 665-2 chr1 79301078 79301556 + 2 NA Intergenic Intergenic -294587 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 755-65 chr7 54156965 54157520 + 2 NA Intergenic HAL1ME|LINE|L1 -173455 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 242-418 chr8 137420691 137420885 + 2 NA Intergenic Intergenic -7200 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 333-35 chr1 177581342 177581619 + 2 NA Intergenic Intergenic -119044 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 258-163 chr17 62938348 62938575 + 2 NA Intergenic L1ME1|LINE|L1 -5754 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 398-56 chr11 29191529 29191834 + 2 NA Intergenic Intergenic -402732 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 167-35 chr14 78757894 78758057 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 354256 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 263-223 chr2 192829265 192829463 + 2 NA Intergenic Intergenic 79519 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 138-12 chr11 58343405 58343536 + 2 NA Intergenic Intergenic 15599 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 625-107 chr7 136746890 136747296 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy -121559 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 282-209 chr2 76647399 76647569 + 2 NA Intergenic Intergenic -338481 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 543-262 chr9 38625680 38626087 + 2 NA Intergenic L1MCa|LINE|L1 4795 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 337-4 chr1 52794536 52794708 + 2 NA intron (NM_024646, intron 6 of 13) L2b|LINE|L2 -48138 NM_001307931 440590 Hs.658458 NM_001004339 ENSG00000203995 ZYG11A ZYG11 zyg-11 family member A, cell cycle regulator protein-coding 358-37 chr10 33364462 33364815 + 2 NA Intergenic L1ME4b|LINE|L1 -29733 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 328-241 chr19 57564920 57565085 + 2 NA Intergenic LTR25-int|LTR|ERV1 -5139 NM_001277092 162972 Hs.180257 NM_153231 ENSG00000251369 ZNF550 - zinc finger protein 550 protein-coding 332-289 chr2 239243539 239243846 + 2 NA intron (NM_006037, intron 2 of 26) L1MC3|LINE|L1 -48235 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 304-88 chr11 98666064 98666223 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -354806 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 185-165 chr5 60952702 60952855 + 2 NA intron (NM_174889, intron 1 of 3) L1M5|LINE|L1 7573 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 321-195 chr15 63027187 63027392 + 2 NA Intergenic Intergenic -15458 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 180-87 chr2 126353344 126353491 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -235432 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 249-244 chr21 24276774 24276926 + 2 NA Intergenic Intergenic 44527 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 574-27 chr12 18794784 18795145 + 2 NA Intergenic MIRb|SINE|MIR 56845 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 352-76 chr11 45831059 45831295 + 2 NA Intergenic L1MB4|LINE|L1 -15941 NM_001127457 1408 Hs.532491 NM_021117 ENSG00000121671 CRY2 HCRY2|PHLL2 cryptochrome circadian regulator 2 protein-coding 293-34 chr10 49264451 49264705 + 2 NA Intergenic Intergenic 34315 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 634-103 chr3 79464281 79464661 + 2 NA intron (NM_002941, intron 2 of 30) L1MB8|LINE|L1 -43416 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 193-81 chr17 61699250 61699364 + 2 NA intron (NM_032043, intron 17 of 19) L1MB7|LINE|L1 -108088 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 407-125 chr19 27994530 27994910 + 2 NA intron (NR_146733, intron 3 of 6) intron (NR_146733, intron 3 of 6) -200780 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 320-386 chr4 55938230 55938471 + 2 NA Intergenic MER51D|LTR|ERV1 -10595 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 228-103 chr14 79696890 79697052 + 2 NA intron (NR_073547, intron 17 of 20) intron (NR_073547, intron 17 of 20) 417591 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 361-336 chr4 153861785 153862012 + 2 NA Intergenic L1PBa|LINE|L1 -72815 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 247-433 chr9 98159083 98159297 + 2 NA intron (NM_052820, intron 1 of 11) AluJr4|SINE|Alu 13702 NM_003389 7464 Hs.113094 NM_003389 ENSG00000106789 CORO2A CLIPINB|IR10|WDR2 coronin 2A protein-coding 356-251 chr2 83304271 83304594 + 2 NA Intergenic L1MA9|LINE|L1 -218382 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 214-31 chr10 18262703 18262839 + 2 NA intron (NM_000724, intron 1 of 12) intron (NM_000724, intron 1 of 12) 2049 NM_001330060 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 199-40 chr11 90874331 90874485 + 2 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -5206 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 508-266 chrX 71844785 71845126 + 2 NA Intergenic L1MEg|LINE|L1 -60577 NR_034005 441501 Hs.641282 NR_034005 LINC00891 - long intergenic non-protein coding RNA 891 ncRNA 247-359 chr6 51405691 51405922 + 2 NA Intergenic L2b|LINE|L2 -216064 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 218-154 chr2 76069591 76069761 + 2 NA Intergenic L1M3|LINE|L1 -358761 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 332-473 chr7 25734520 25734707 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 16419 NR_157815 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 314-489 chr6 3715319 3715568 + 2 NA Intergenic L1ME4b|LINE|L1 36569 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 357-207 chr2 97704852 97705038 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -8623 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 422-307 chr9 28181558 28181836 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 537608 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 341-352 chr3 169567333 169567565 + 2 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 96263 NM_001205194 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 285-177 chr19 37586338 37586528 + 2 NA non-coding (NR_038247, exon 5 of 5) non-coding (NR_038247, exon 5 of 5) 8313 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 322-461 chr6 72278816 72279109 + 2 NA intron (NM_001350435, intron 15 of 23) intron (NM_001350435, intron 15 of 23) 62021 NM_001350471 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 546-234 chr8 69976074 69976453 + 2 NA Intergenic Intergenic 94989 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 385-241 chr3 76543999 76544284 + 2 NA Intergenic L2c|LINE|L2 -495958 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 545-152 chr4 18740355 18740796 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -718700 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 337-161 chr14 79220543 79220720 + 2 NA intron (NR_073547, intron 14 of 20) L1MC1|LINE|L1 20649 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 372-44 chr10 56620529 56620843 + 2 NA Intergenic Intergenic -259413 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 397-223 chr4 61806476 61806814 + 2 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 355120 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 677-6 chr1 96191381 96191907 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 182481 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 195-8 chr1 108740556 108740723 + 2 NA intron (NM_001144937, intron 11 of 12) MIRb|SINE|MIR -6035 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 741-75 chr8 112033657 112034214 + 2 NA Intergenic L1MA8|LINE|L1 -609558 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 124-47 chr3 27677790 27677866 + 2 NA Intergenic Intergenic 44495 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 299-437 chr8 19369711 19369984 + 2 NA intron (NR_156444, intron 7 of 8) L1MA4|LINE|L1 55871 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 391-84 chr12 119143211 119143424 + 2 NA intron (NM_194286, intron 8 of 12) intron (NM_194286, intron 8 of 12) 33167 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 225-371 chr8 122707638 122707752 + 2 NA Intergenic Intergenic -13589 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 343-278 chr2 156609000 156609301 + 2 NA Intergenic L1MC5a|LINE|L1 172771 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 335-128 chr12 70763540 70763727 + 2 NA intron (NM_001207015, intron 2 of 12) intron (NM_001207015, intron 2 of 12) -8874 NM_001207016 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 477-105 chr15 97933745 97934137 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -26762 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 170-41 chr13 92158820 92158962 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 193316 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 397-101 chr14 95861834 95862161 + 2 NA Intergenic Intergenic -14395 NR_132399 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 232-362 chr7 94162563 94162758 + 2 NA Intergenic Intergenic -158305 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 218-321 chr8 72376350 72376526 + 2 NA Intergenic L1PA15-16|LINE|L1 -124804 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 263-45 chr10 48205711 48205898 + 2 NA intron (NM_001018071, intron 14 of 28) intron (NM_001018071, intron 14 of 28) -30661 NM_001042512 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 273-15 chr1 95300832 95301027 + 2 NA Intergenic Intergenic 17334 NR_135588 100996630 Hs.662270 NR_135588 ENSG00000228504 LINC01760 - long intergenic non-protein coding RNA 1760 ncRNA 473-85 chr14 61782547 61782873 + 2 NA intron (NM_003082, intron 8 of 9) AluSz|SINE|Alu 20290 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 316-334 chr22 28131794 28131999 + 2 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -211284 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 454-189 chr20 42870586 42870989 + 2 NA intron (NM_133170, intron 2 of 31) L1MB2|LINE|L1 -97956 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 333-427 chr5 7421572 7421763 + 2 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 25529 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 419-224 chr5 17675074 17675452 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -19625 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 482-44 chr10 123830977 123831315 + 2 NA intron (NM_198148, intron 4 of 13) intron (NM_198148, intron 4 of 13) 60661 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 636-140 chr7 132376933 132377372 + 2 NA intron (NM_020911, intron 3 of 31) intron (NM_020911, intron 3 of 31) 116291 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 774-68 chr5 45097026 45097645 + 2 NA Intergenic Intergenic 288388 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 342-284 chr20 39221398 39221705 + 2 NA intron (NR_027124, intron 1 of 3) intron (NR_027124, intron 1 of 3) 3197 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 243-450 chr8 99495037 99495226 + 2 NA intron (NM_017890, intron 25 of 61) intron (NM_017890, intron 25 of 61) 41599 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 528-204 chr5 96191753 96192203 + 2 NA intron (NR_130776, intron 1 of 4) L3|LINE|CR1 112840 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 245-14 chr1 154053800 154053993 + 2 NA intron (NM_001159484, intron 25 of 37) MER9a3|LTR|ERVK 50696 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 301-343 chr5 3902565 3902741 + 2 NA Intergenic Intergenic 306821 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 465-273 chr7 54027955 54028214 + 2 NA Intergenic Intergenic -216153 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 338-403 chr5 3548500 3548686 + 2 NA Intergenic L1MC1|LINE|L1 -12499 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 249-457 chr9 122726342 122726527 + 2 NA Intergenic L1PA7|LINE|L1 2444 NM_001005235 254973 Hs.626838 NM_001005235 ENSG00000136939 OR1L4 OR1L5|OR9-29|OR9-E|OST046 olfactory receptor family 1 subfamily L member 4 protein-coding 231-266 chr4 125643356 125643517 + 2 NA Intergenic Intergenic 136177 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 360-319 chr4 28577178 28577399 + 2 NA Intergenic Intergenic -242294 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 249-154 chr17 71249720 71249909 + 2 NA Intergenic Intergenic -47635 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 561-15 chr1 241804122 241804663 + 2 NA Intergenic L1MC1|LINE|L1 -43799 NM_001319224 9156 Hs.498248 NM_003686 ENSG00000174371 EXO1 HEX1|hExoI exonuclease 1 protein-coding 482-133 chr2 154565846 154566182 + 2 NA Intergenic L1MA4|LINE|L1 -108576 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 329-563 chr8 33096829 33097071 + 2 NA Intergenic Intergenic 375115 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 396-210 chr3 20269534 20269767 + 2 NA Intergenic LTR12_|LTR|ERV1 -72818 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 476-260 chr8 54772213 54772539 + 2 NA Intergenic Intergenic 156280 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 375-25 chr1 214953297 214953598 + 2 NA Intergenic Intergenic -52095 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 397-329 chr8 43387543 43387839 + 2 NA Intergenic MER4D0|LTR|ERV1 95249 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 346-358 chr4 105738563 105738744 + 2 NA intron (NM_001370181, intron 5 of 11) L1MA5|LINE|L1 27840 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 369-92 chr13 19903562 19903841 + 2 NA Intergenic AluJb|SINE|Alu -40052 NM_001142684 9205 Hs.530988 NM_014242 ENSG00000132950 ZMYM5 HSPC050|MYM|ZNF198L1|ZNF237 zinc finger MYM-type containing 5 protein-coding 292-217 chr2 72268900 72269090 + 2 NA intron (NR_135773, intron 19 of 21) L1ME3Cz|LINE|L1 -121133 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 338-9 chr1 61326964 61327233 + 2 NA intron (NM_001134673, intron 3 of 10) (AT)n|Simple_repeat|Simple_repeat -73580 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 311-319 chr21 36585358 36585620 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -8920 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 360-183 chr18 52152966 52153169 + 2 NA Intergenic L3b|LINE|CR1 -187130 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 296-279 chr22 25553475 25553687 + 2 NA Intergenic MER21B|LTR|ERVL -11094 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 116-38 chr5 110080770 110080853 + 2 NA Intergenic L1MC4|LINE|L1 197629 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 210-20 chr1 194891026 194891188 + 2 NA Intergenic LOR1-int|LTR|ERV1 1197608 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 331-341 chr3 17464284 17464551 + 2 NA intron (NM_014744, intron 3 of 21) intron (NM_014744, intron 3 of 21) 235603 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 278-197 chr2 6126359 6126600 + 2 NA Intergenic MLT2B1|LTR|ERVL 144501 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 222-90 chr12 97235398 97235610 + 2 NA Intergenic (CACACA)n|Simple_repeat|Simple_repeat -227272 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 718-87 chr7 91841433 91841893 + 2 NA Intergenic L2c|LINE|L2 39039 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 356-229 chr2 34622644 34622830 + 2 NA Intergenic Intergenic -54820 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 300-198 chr2 78060817 78060986 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -27829 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 649-101 chr7 14134585 14135089 + 2 NA Intergenic Intergenic -143412 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 222-95 chr13 47201891 47202042 + 2 NA Intergenic Intergenic -304890 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 472-75 chr13 59215758 59216041 + 2 NA Intergenic Intergenic -796819 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 378-434 chr8 68896833 68897201 + 2 NA Intergenic Intergenic 207173 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 320-482 chr6 56263802 56264064 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) -16353 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 368-150 chr14 72380825 72381077 + 2 NA intron (NM_001370288, intron 3 of 16) L1MA5A|LINE|L1 -135869 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 276-481 chr9 84543222 84543450 + 2 NA Intergenic MIRb|SINE|MIR -125122 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 426-92 chr16 31755434 31755701 + 2 NA intron (NM_001130913, intron 4 of 4) intron (NM_001130913, intron 4 of 4) 42338 NM_001130913 124411 Hs.528826 NM_001004300 ENSG00000197302 ZNF720 - zinc finger protein 720 protein-coding 424-31 chr10 93213843 93214187 + 2 NA Intergenic Intergenic 140122 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 240-199 chr19 8810589 8810767 + 2 NA 3' UTR (NM_144693, exon 10 of 10) 3' UTR (NM_144693, exon 10 of 10) 11385 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 308-97 chr12 10647173 10647356 + 2 NA intron (NM_018423, intron 1 of 10) THE1B-int|LTR|ERVL-MaLR 26788 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 217-20 chr1 184245859 184246025 + 2 NA Intergenic Intergenic -141087 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 149-99 chr8 79839150 79839259 + 2 NA intron (NR_110954, intron 2 of 5) L1ME1|LINE|L1 32533 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 508-26 chr10 43050769 43051174 + 2 NA Intergenic L1MDa|LINE|L1 -26056 NM_020630 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 329-491 chr6 61506844 61507047 + 2 NA Intergenic ALR/Alpha|Satellite|centr -67185 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 315-326 chr3 187304367 187304565 + 2 NA Intergenic Intergenic -12444 NM_001031849 5648 Hs.89983 NM_001879 ENSG00000127241 MASP1 3MC1|CRARF|CRARF1|MAP1|MASP|MASP3|MAp44|PRSS5|RaRF mannan binding lectin serine peptidase 1 protein-coding 548-216 chr7 97398264 97398731 + 2 NA Intergenic L1M5|LINE|L1 281904 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 266-180 chr2 82757096 82757288 + 2 NA Intergenic Intergenic -99611 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 285-319 chr5 5119560 5119811 + 2 NA Intergenic L1PA14|LINE|L1 20369 NR_109915 101929176 Hs.208717 NR_109915 CTD-2297D10.2 - uncharacterized LOC101929176 ncRNA 271-275 chr3 95736216 95736424 + 2 NA Intergenic Intergenic -53127 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 215-302 chr7 83122720 83122828 + 2 NA intron (NM_033026, intron 3 of 24) L1MA3|LINE|L1 40110 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 223-190 chr21 21893224 21893388 + 2 NA Intergenic L1M2|LINE|L1 146321 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 431-221 chr5 39359032 39359328 + 2 NA intron (NM_001737, intron 1 of 10) L2a|LINE|L2 5315 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 330-21 chr1 80772537 80772838 + 2 NA Intergenic MIRb|SINE|MIR 131400 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 315-491 chr8 123815403 123815656 + 2 NA TTS (NM_001317917) TTS (NM_001317917) -36458 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 560-103 chr21 15364361 15364787 + 2 NA Intergenic L1MD|LINE|L1 -299574 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 219-262 chr4 116125523 116125694 + 2 NA Intergenic HAL1b|LINE|L1 -174117 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 276-261 chr20 17081571 17081805 + 2 NA Intergenic L1ME3Cz|LINE|L1 -144419 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 351-229 chr2 122843816 122844034 + 2 NA Intergenic Intergenic 229556 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 580-61 chr16 63604374 63604839 + 2 NA Intergenic Intergenic 1517457 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 339-114 chr11 122264908 122265223 + 2 NA intron (NR_137180, intron 2 of 4) intron (NR_137180, intron 2 of 4) 44422 NR_137193 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 498-235 chr6 110279473 110279825 + 2 NA intron (NM_001123364, intron 4 of 4) L1ME4c|LINE|L1 50409 NM_001354595 728464 Hs.634429 NM_001123364 ENSG00000053328 METTL24 C6orf186 methyltransferase like 24 protein-coding 461-148 chr2 206732629 206732977 + 2 NA Intergenic L2a|LINE|L2 -14407 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 300-68 chr11 50320563 50320754 + 2 NA Intergenic Intergenic -22196 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 321-597 chr9 72442711 72442975 + 2 NA Intergenic LTR81|LTR|Gypsy -77635 NM_001102420 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 508-83 chr18 8802352 8802806 + 2 NA intron (NM_015210, intron 10 of 16) intron (NM_015210, intron 10 of 16) 85198 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 414-112 chr16 82823960 82824266 + 2 NA non-coding (NR_110938, exon 2 of 3) non-coding (NR_110938, exon 2 of 3) 50794 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 364-31 chr1 187192590 187192795 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 99850 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 227-254 chr4 64116916 64117083 + 2 NA Intergenic Intergenic 292451 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 292-227 chr2 125177319 125177601 + 2 NA Intergenic Intergenic 940525 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 490-115 chr18 12571729 12572007 + 2 NA intron (NM_020148, intron 2 of 15) L2c|LINE|L2 84864 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 282-321 chr3 194959395 194959657 + 2 NA Intergenic Intergenic -135062 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 484-221 chr5 118409765 118410070 + 2 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 127343 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 250-102 chr12 128557971 128558202 + 2 NA intron (NM_001136103, intron 3 of 8) MIR|SINE|MIR 263994 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 171-139 chr8 116074905 116075035 + 2 NA intron (NR_046215, intron 7 of 13) L1ME2z|LINE|L1 250089 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 458-115 chr19 38042125 38042487 + 2 NA intron (NM_015073, intron 2 of 21) L1M3|LINE|L1 -120790 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 389-347 chr7 64259931 64260156 + 2 NA intron (NM_153363, intron 2 of 4) intron (NM_153363, intron 2 of 4) 31569 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 286-122 chr14 65104609 65104807 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -2013 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 689-94 chr8 10130537 10131043 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 35139 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 386-192 chr2 184683513 184683752 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 85103 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 529-11 chr10 23223581 23224046 + 2 NA exon (NM_001365862, exon 14 of 16) exon (NM_001365862, exon 14 of 16) 31501 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 591-130 chr5 67694928 67695375 + 2 NA Intergenic Intergenic -48362 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 678-84 chr5 19740774 19741284 + 2 NA intron (NM_001349559, intron 4 of 12) intron (NM_001349559, intron 4 of 12) 145243 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 324-78 chr11 3877332 3877641 + 2 NA intron (NM_001277962, intron 1 of 12) intron (NM_001277962, intron 1 of 12) 21424 NR_039835 100616453 NR_039835 ENSG00000284525 MIR4687 - microRNA 4687 ncRNA 270-160 chr18 4833691 4833865 + 2 NA Intergenic Intergenic -247404 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 239-432 chr9 12560766 12560927 + 2 NA Intergenic Intergenic -132539 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 698-18 chr11 96631207 96631797 + 2 NA Intergenic PRIMA4-int|LTR|ERV1 123077 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 144-94 chr6 155918009 155918146 + 2 NA Intergenic L1ME4a|LINE|L1 -28720 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 437-231 chr5 147541187 147541524 + 2 NA Intergenic Intergenic -18639 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 400-132 chr17 66570427 66570664 + 2 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -153691 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 369-107 chr14 43879866 43880088 + 2 NA Intergenic MER110|LTR|ERV1 627306 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 343-448 chr5 123081580 123081822 + 2 NA Intergenic Intergenic -7540 NM_001136239 93166 Hs.135118 NM_001136239 ENSG00000061455 PRDM6 KMT8C|PDA3|PRISM PR/SET domain 6 protein-coding 676-65 chr2 176882523 176883016 + 2 NA Intergenic Intergenic 245015 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 431-147 chr2 145878865 145879192 + 2 NA Intergenic Intergenic -708029 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 660-79 chr5 44434800 44435344 + 2 NA Intergenic Intergenic -45652 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 353-2 chr1 34548560 34548888 + 2 NA Intergenic HAL1|LINE|L1 120970 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 129-76 chr8 104450989 104451071 + 2 NA intron (NM_001385, intron 2 of 9) intron (NM_001385, intron 2 of 9) 16025 NM_001385 1807 Hs.443161 NM_001385 ENSG00000147647 DPYS DHP|DHPase dihydropyrimidinase protein-coding 267-312 chr5 8521647 8521816 + 2 NA Intergenic Intergenic 60806 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 328-431 chr5 10122441 10122703 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 127316 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 221-252 chr5 152371093 152371224 + 2 NA Intergenic Intergenic 34121 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 396-363 chr8 135411056 135411353 + 2 NA Intergenic L1MB3|LINE|L1 -46252 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 445-77 chr15 53724160 53724486 + 2 NA intron (NM_182758, intron 2 of 19) L1MA9|LINE|L1 35340 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 359-191 chr17 71963860 71964120 + 2 NA Intergenic Intergenic 61989 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 305-120 chr12 41352332 41352608 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -85269 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 371-79 chr12 20702635 20702973 + 2 NA intron (NM_017435, intron 3 of 14) intron (NM_017435, intron 3 of 14) 7339 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 361-182 chr18 12686547 12686831 + 2 NA intron (NM_001271989, intron 6 of 10) MIRb|SINE|MIR 16034 NM_024899 79959 Hs.236940 NM_024899 ENSG00000101624 CEP76 C18orf9|HsT1705 centrosomal protein 76 protein-coding 317-299 chr3 44701179 44701409 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie -11349 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 601-103 chr4 33247856 33248317 + 2 NA Intergenic Intergenic 791807 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 255-155 chr17 12379161 12379345 + 2 NA Intergenic L2c|LINE|L2 -170715 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 381-75 chr11 79952602 79952853 + 2 NA Intergenic Intergenic -511697 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 310-427 chr5 128553991 128554178 + 2 NA Intergenic L1PA5|LINE|L1 -15839 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 564-200 chr8 54525976 54526396 + 2 NA Intergenic L2c|LINE|L2 68251 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 321-373 chr3 63307727 63307887 + 2 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 29499 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 253-439 chrX 47947800 47948001 + 2 NA Intergenic L1M4|LINE|L1 56089 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 359-287 chr20 42045836 42046126 + 2 NA Intergenic LTR81B|LTR|Gypsy -427604 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 260-164 chr16 75485616 75485821 + 2 NA intron (NR_163481, intron 1 of 2) intron (NR_163481, intron 1 of 2) 9723 NM_021615 4166 Hs.655622 NM_021615 ENSG00000183196 CHST6 C-GlcNAc6ST|GST4-beta|MCDC1|glcNAc6ST-5|gn6st-5|hCGn6ST carbohydrate sulfotransferase 6 protein-coding 320-587 chr9 29476950 29477236 + 2 NA Intergenic MIRb|SINE|MIR -263492 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 365-296 chr4 96298269 96298522 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -12308 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 262-235 chr2 202387337 202387530 + 2 NA intron (NM_001204, intron 1 of 12) intron (NM_001204, intron 1 of 12) 11106 NM_001204 659 Hs.471119 NM_001204 ENSG00000204217 BMPR2 BMPR-II|BMPR3|BMR2|BRK-3|POVD1|PPH1|T-ALK bone morphogenetic protein receptor type 2 protein-coding 316-392 chr4 55239657 55239831 + 2 NA Intergenic L1MA7|LINE|L1 -106498 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 475-129 chr2 62216737 62217159 + 2 NA intron (NM_001319075, intron 1 of 1) MIRc|SINE|MIR 1427 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 281-25 chr1 217354655 217354852 + 2 NA Intergenic MIR|SINE|MIR -217051 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 495-203 chr5 101757938 101758274 + 2 NA Intergenic LTR18A|LTR|ERVL 538178 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 325-149 chr13 56239248 56239564 + 2 NA Intergenic Intergenic -901512 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 222-61 chr11 36388436 36388591 + 2 NA intron (NM_024841, intron 2 of 9) L1ME4b|LINE|L1 -12484 NM_001160169 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 252-389 chr7 11011045 11011262 + 2 NA intron (NR_033436, intron 3 of 16) intron (NR_033436, intron 3 of 16) 37281 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 441-20 chr10 18816017 18816303 + 2 NA Intergenic Intergenic 156729 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 324-336 chr22 47845977 47846290 + 2 NA intron (NR_122046, intron 8 of 8) MLT1D|LTR|ERVL-MaLR 214459 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 361-117 chr12 111051786 111052094 + 2 NA intron (NM_015267, intron 1 of 21) L1M4b|LINE|L1 17775 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 178-20 chr10 59302656 59302788 + 2 NA intron (NM_001347852, intron 5 of 12) intron (NM_001347852, intron 5 of 12) 59827 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 353-66 chr10 88023318 88023555 + 2 NA Intergenic L1MA9|LINE|L1 159811 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 313-567 chrX 39296346 39296637 + 2 NA Intergenic Intergenic 30871 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 689-60 chr21 23869549 23869975 + 2 NA Intergenic MER31B|LTR|ERV1 451615 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 201-153 chr3 39574791 39574968 + 2 NA Intergenic L1M6|LINE|L1 72813 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 297-505 chr9 11434154 11434322 + 2 NA Intergenic Intergenic 821032 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 206-199 chr5 13769744 13769902 + 2 NA intron (NM_001369, intron 56 of 78) intron (NM_001369, intron 56 of 78) 174657 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 342-338 chr3 165263430 165263718 + 2 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 56614 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 244-221 chr3 27337131 27337305 + 2 NA intron (NM_152534, intron 6 of 38) L1M2|LINE|L1 32165 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 367-99 chr12 113420033 113420226 + 2 NA Intergenic Intergenic -2251 NM_001304993 113675 Hs.337594 NM_138432 ENSG00000139410 SDSL SDH 2|SDS-RS1|TDH|cSDH serine dehydratase like protein-coding 309-413 chr4 176396431 176396673 + 2 NA Intergenic L2|LINE|L2 76586 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 277-455 chrX 24290328 24290591 + 2 NA Intergenic Intergenic 22934 NM_001136233 170067 Hs.716893 NM_001136233 SUPT20HL2 FAM48B1|FAM48B2 SUPT20H like 2 protein-coding 312-487 chr7 57170591 57170756 + 2 NA intron (NR_030766, intron 3 of 3) intron (NR_030766, intron 3 of 3) 9483 NR_030766 642006 Hs.562648 NR_030766 GUSBP10 - GUSB pseudogene 10 pseudo 329-615 chr9 127812949 127813243 + 2 NA intron (NM_001288803, intron 13 of 13) intron (NM_001288803, intron 13 of 13) -2970 NR_136302 102723566 NR_136302 ENSG00000225032 LOC102723566 - uncharacterized LOC102723566 ncRNA 645-65 chr2 185010461 185010914 + 2 NA Intergenic L2|LINE|L2 156385 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 314-211 chr16 64883147 64883374 + 2 NA Intergenic MIRb|SINE|MIR 238803 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 269-359 chr6 128607780 128608029 + 2 NA Intergenic Intergenic -87305 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 310-113 chr13 47090133 47090418 + 2 NA Intergenic Intergenic -193199 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 504-175 chr3 136917057 136917403 + 2 NA intron (NM_001291999, intron 1 of 3) MER30|DNA|hAT-Charlie -13272 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 314-270 chr2 31771830 31772023 + 2 NA Intergenic Intergenic 32054 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 245-18 chr1 170884774 170884958 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie -50605 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 426-303 chr8 112233168 112233494 + 2 NA intron (NM_001363185, intron 64 of 66) intron (NM_001363185, intron 64 of 66) -410162 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 471-134 chr2 81531976 81532353 + 2 NA Intergenic Intergenic -65218 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 265-80 chr12 58260456 58260679 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 172675 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 468-291 chr7 7625621 7626037 + 2 NA Intergenic Intergenic -14923 NM_001302350 729852 Hs.652371 NM_001302348 ENSG00000219545 UMAD1 RPA3-AS1|RPA3OS UBAP1-MVB12-associated (UMA) domain containing 1 protein-coding 281-193 chr2 17426412 17426622 + 2 NA Intergenic Intergenic 91923 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 201-191 chr5 38906343 38906507 + 2 NA intron (NM_003999, intron 9 of 17) intron (NM_003999, intron 9 of 17) 60413 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 500 chr1 12479925 12480339 + 2 NA intron (NM_015378, intron 67 of 69) intron (NM_015378, intron 67 of 69) -27114 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 347-217 chr2 57265885 57266132 + 2 NA Intergenic L1MA4|LINE|L1 -641643 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 239-268 chr4 29013933 29014146 + 2 NA intron (NR_146499, intron 2 of 2) intron (NR_146499, intron 2 of 2) 17255 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 254-420 chr8 110334025 110334233 + 2 NA Intergenic Intergenic -358358 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 338-493 chr7 21812649 21812918 + 2 NA intron (NM_001277115, intron 63 of 81) MER5B|DNA|hAT-Charlie 133116 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 173-30 chr13 87518725 87518832 + 2 NA intron (NR_033829, intron 1 of 5) intron (NR_033829, intron 1 of 5) 99962 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 316-372 chr3 168735122 168735342 + 2 NA intron (NR_021485, intron 6 of 15) L1MA4|LINE|L1 -166713 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 434-254 chr6 151642382 151642697 + 2 NA Intergenic Intergenic -47957 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 302-60 chr10 120989484 120989736 + 2 NA Intergenic MER61-int|LTR|ERV1 138248 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 755-11 chr10 44367181 44367864 + 2 NA Intergenic Intergenic 17575 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 307-464 chr7 122648139 122648318 + 2 NA intron (NM_001167940, intron 3 of 29) L2c|LINE|L2 50889 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 561-166 chr5 102335204 102335546 + 2 NA Intergenic L1MB2|LINE|L1 -39091 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 462-61 chr12 71250473 71250748 + 2 NA Intergenic L2b|LINE|L2 -92611 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 247-138 chr15 97704355 97704542 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -143750 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 388-148 chr2 16416047 16416265 + 2 NA Intergenic AluSx1|SINE|Alu 249678 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 429-135 chr19 44403055 44403297 + 2 NA Intergenic AluSg4|SINE|Alu -1568 NM_001291491 26974 Hs.709428 NM_152354 ENSG00000267508 ZNF285 ZNF285A zinc finger protein 285 protein-coding 509-200 chr5 94656730 94657130 + 2 NA intron (NM_032290, intron 9 of 20) L1M2b|LINE|L1 38261 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 267-282 chr4 22139674 22139926 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -191049 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 226-214 chr3 5665616 5665773 + 2 NA Intergenic L1M4b|LINE|L1 -415439 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 352-447 chr6 40379280 40379528 + 2 NA non-coding (NR_160958, exon 2 of 2) non-coding (NR_160958, exon 2 of 2) 1067 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 450-269 chr6 158410482 158410908 + 2 NA intron (NM_020245, intron 1 of 13) intron (NM_020245, intron 1 of 13) 87713 NR_145798 109623462 NR_145798 SNORA116 - small nucleolar RNA, H/ACA box 116 snoRNA 289-104 chr12 52293933 52294173 + 2 NA intron (NM_001320198, intron 2 of 10) intron (NM_001320198, intron 2 of 10) -2519 NM_002281 3887 Hs.658118 NM_002281 ENSG00000205426 KRT81 HB1|Hb-1|KRTHB1|MLN137|ghHkb1|hHAKB2-1 keratin 81 protein-coding 250-61 chr10 127850614 127850852 + 2 NA Intergenic Intergenic 42208 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 266-431 chr8 116888328 116888534 + 2 NA Intergenic Intergenic -13565 NM_006265 5885 Hs.81848 NM_006265 ENSG00000164754 RAD21 CDLS4|HR21|HRAD21|MCD1|MGS|NXP1|SCC1|hHR21 RAD21 cohesin complex component protein-coding 283-29 chr1 185490078 185490329 + 2 NA Intergenic Intergenic 138285 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 139-25 chr12 79825593 79825683 + 2 NA intron (NM_001244990, intron 6 of 24) intron (NM_001244990, intron 6 of 24) 88273 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 335-296 chr20 42242457 42242703 + 2 NA intron (NM_133170, intron 15 of 31) L2c|LINE|L2 -442903 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 382-30 chr10 33756176 33756523 + 2 NA Intergenic L2a|LINE|L2 16331 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 287-186 chr2 19697964 19698135 + 2 NA Intergenic Intergenic -170805 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 323-481 chr7 26820627 26820924 + 2 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 36948 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 339-503 chr6 123155316 123155648 + 2 NA Intergenic Intergenic 159247 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 211-136 chr2 33524522 33524699 + 2 NA intron (NM_015376, intron 8 of 16) intron (NM_015376, intron 8 of 16) 10735 NM_015376 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 334-38 chr1 218592132 218592403 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 82172 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 115-36 chr5 24287323 24287384 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat 336005 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 371-56 chr10 112396770 112397027 + 2 NA intron (NM_203379, intron 2 of 20) intron (NM_203379, intron 2 of 20) 20700 NM_016234 51703 Hs.11638 NM_016234 ENSG00000197142 ACSL5 ACS2|ACS5|FACL5 acyl-CoA synthetase long chain family member 5 protein-coding 472-188 chr20 58866655 58866971 + 2 NA intron (NR_126334, intron 4 of 4) intron (NR_126334, intron 4 of 4) 13832 NM_001309883 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 337-93 chr11 58007995 58008223 + 2 NA Intergenic HAL1|LINE|L1 -15772 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 341-72 chr10 111656308 111656499 + 2 NA Intergenic Intergenic 527362 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 363-260 chr20 52338727 52338911 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -146834 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 349-335 chr3 99259159 99259388 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 -357578 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 496-21 chr1 166640138 166640585 + 2 NA Intergenic L1PA16|LINE|L1 36445 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 219-335 chr7 53374679 53374839 + 2 NA Intergenic L1MC3|LINE|L1 339126 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 304-317 chr22 40578980 40579162 + 2 NA intron (NM_020831, intron 2 of 14) AluJr|SINE|Alu -45244 NM_001318139 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 312-546 chr9 79023634 79023823 + 2 NA Intergenic MIR|SINE|MIR 121938 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 179-24 chr14 20252752 20252868 + 2 NA Intergenic L1MC3|LINE|L1 10018 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 138-23 chr14 58242401 58242531 + 2 NA Intergenic Intergenic -2339 NR_038123 5684 Hs.558799 NM_002788 ENSG00000100567 PSMA3 HC8|PSC3 proteasome subunit alpha 3 protein-coding 333-85 chr11 55817911 55818224 + 2 NA Intergenic AluY|SINE|Alu -1563 NM_001001952 219438 Hs.553624 NM_001001952 ENSG00000186119 OR5D18 OR11-143 olfactory receptor family 5 subfamily D member 18 protein-coding 195-181 chr5 2768615 2768732 + 2 NA Intergenic L1MB7|LINE|L1 16542 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 333-270 chr2 150632102 150632404 + 2 NA intron (NR_110244, intron 2 of 4) intron (NR_110244, intron 2 of 4) 3356 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 296-255 chr2 205732575 205732811 + 2 NA intron (NM_018534, intron 7 of 15) intron (NM_018534, intron 7 of 15) 50192 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 374-276 chr4 58528612 58528874 + 2 NA intron (NR_133943, intron 2 of 2) Charlie2b|DNA|hAT-Charlie 7585 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 120-2 chr1 69305566 69305633 + 2 NA Intergenic L1ME3A|LINE|L1 -127656 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 616-64 chr18 21262729 21263322 + 2 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 20783 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 366-324 chr4 110995414 110995674 + 2 NA Intergenic Intergenic -134897 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 201-47 chr11 81401269 81401412 + 2 NA Intergenic L2b|LINE|L2 489496 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 711-19 chr13 70199355 70199747 + 2 NA Intergenic Intergenic -91058 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 371-14 chr1 102288804 102289053 + 2 NA Intergenic L1MA1|LINE|L1 -291694 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 201-113 chr2 15350656 15350815 + 2 NA intron (NR_052013, intron 35 of 50) L1ME3B|LINE|L1 210599 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 267-34 chr1 236556017 236556234 + 2 NA exon (NM_018072, exon 38 of 45) exon (NM_018072, exon 38 of 45) -31617 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 374-342 chr6 104333091 104333439 + 2 NA Intergenic Intergenic 526281 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 599-22 chr11 27134146 27134485 + 2 NA intron (NR_125767, intron 3 of 4) L1M2|LINE|L1 84453 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 393-223 chr3 96262827 96263116 + 2 NA Intergenic L1M3de|LINE|L1 -96993 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 302-472 chr8 132854959 132855184 + 2 NA Intergenic L1M4|LINE|L1 -11887 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 326-246 chr2 80778678 80778936 + 2 NA Intergenic Intergenic 465428 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 375-10 chr1 80720942 80721151 + 2 NA Intergenic L1MA5A|LINE|L1 79759 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 244-379 chr8 127354515 127354707 + 2 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -45788 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 397-155 chr2 67434483 67434871 + 2 NA Intergenic LTR89|LTR|ERVL? 37344 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 426-234 chr5 54131934 54132275 + 2 NA intron (NM_019087, intron 3 of 4) intron (NM_019087, intron 3 of 4) 178469 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 324-514 chr8 13501680 13501939 + 2 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) 13042 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 363-273 chr21 39588472 39588789 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 24192 NR_026543 114041 Hs.375120 NM_153754 ENSG00000184809 B3GALT5-AS1 C21orf88 B3GALT5 antisense RNA 1 ncRNA 281-4 chr1 49422126 49422289 + 2 NA intron (NR_046839, intron 3 of 3) intron (NR_046839, intron 3 of 3) 49878 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 498-86 chr14 70445050 70445401 + 2 NA Intergenic LTR25-int|LTR|ERV1 -6949 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 352-407 chr5 26856533 26856726 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 181957 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 348-319 chr3 119266151 119266488 + 2 NA intron (NR_046574, intron 3 of 3) L1ME4b|LINE|L1 -25441 NM_003778 8702 Hs.13225 NM_003778 ENSG00000121578 B4GALT4 B4Gal-T4|beta4Gal-T4 beta-1,4-galactosyltransferase 4 protein-coding 317-377 chr5 19821280 19821542 + 2 NA intron (NM_001349559, intron 3 of 12) L1P4d|LINE|L1 64861 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 374-232 chr21 26873859 26874067 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -28554 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 381-385 chr8 103218951 103219165 + 2 NA intron (NM_001364874, intron 3 of 3) intron (NM_001364874, intron 3 of 3) -46918 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 695-84 chr5 119949366 119949828 + 2 NA Intergenic MER41B|LTR|ERV1 320038 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 707-31 chr15 25280590 25281176 + 2 NA intron (NR_146177, intron 146 of 147) intron (NR_146177, intron 146 of 147) 2540 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 355-256 chr2 136707771 136708118 + 2 NA Intergenic Intergenic -57601 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 167-28 chr12 25732224 25732315 + 2 NA Intergenic L1M4b|LINE|L1 -83691 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 1015-12 chr5 165117254 165117923 + 2 NA Intergenic Intergenic 647309 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 233-359 chr7 105567382 105567545 + 2 NA non-coding (NR_144478, exon 14 of 14) non-coding (NR_144478, exon 14 of 14) 14030 NM_001355530 100130771 Hs.719432 NM_001355526 ENSG00000185055 EFCAB10 - EF-hand calcium binding domain 10 protein-coding 569-175 chr8 82661174 82661699 + 2 NA Intergenic L1PA16|LINE|L1 -250668 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 298-513 chrX 67246293 67246471 + 2 NA Intergenic L1MA1|LINE|L1 -297639 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 613-22 chr11 15409286 15409733 + 2 NA Intergenic Intergenic -234376 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 176-64 chr2 117896310 117896453 + 2 NA Intergenic L1MC1|LINE|L1 62650 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 246-292 chr4 40713345 40713535 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger -36515 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 290-122 chr13 89390588 89390855 + 2 NA Intergenic AluSc8|SINE|Alu 109788 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 492-251 chr8 35197306 35197639 + 2 NA Intergenic L1ME4b|LINE|L1 -38003 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 342-223 chr2 17073447 17073682 + 2 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -407730 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 306-66 chr10 114965114 114965372 + 2 NA intron (NM_139169, intron 4 of 7) L1ME3|LINE|L1 27048 NM_139169 142940 Hs.21187 NM_139169 ENSG00000165832 TRUB1 PUS4 TruB pseudouridine synthase family member 1 protein-coding 348-228 chr2 84246157 84246377 + 2 NA Intergenic MLT2B2|LTR|ERVL -44415 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 280-367 chr7 3455986 3456204 + 2 NA intron (NM_152744, intron 1 of 44) L1MD2|LINE|L1 154843 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 488-260 chr7 108809059 108809399 + 2 NA Intergenic Intergenic 75358 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 208-239 chr6 140087390 140087561 + 2 NA intron (NR_121622, intron 3 of 3) intron (NR_121622, intron 3 of 3) -96214 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 180-107 chr3 63625847 63625985 + 2 NA Intergenic Intergenic -26759 NM_001080537 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 241-21 chr1 172007416 172007590 + 2 NA intron (NM_001278252, intron 4 of 14) L1ME2|LINE|L1 -131305 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 280-38 chr1 241059091 241059359 + 2 NA intron (NM_001350116, intron 3 of 16) L2b|LINE|L2 -73047 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 262-70 chr11 15401695 15401887 + 2 NA Intergenic L1PA3|LINE|L1 -242094 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 308-195 chr18 10212422 10212605 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 201857 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 241-234 chr3 59851538 59851725 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -193134 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 480-170 chr20 7325597 7326013 + 2 NA Intergenic Intergenic -18373 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 389-48 chr10 112749591 112749825 + 2 NA intron (NM_001365713, intron 8 of 8) Charlie2b|DNA|hAT-Charlie -73788 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 351-77 chr11 84718204 84718417 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 2632 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 450-206 chr3 122934307 122934584 + 2 NA intron (NR_046079, intron 5 of 22) L1MC5|LINE|L1 41689 NM_001256347 54437 Hs.210870 NM_018987 ENSG00000082684 SEMA5B SEMAG|SemG semaphorin 5B protein-coding 208-40 chr11 85345412 85345614 + 2 NA intron (NM_001142699, intron 3 of 27) MIRb|SINE|MIR 281757 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 350-53 chr10 80559028 80559239 + 2 NA intron (NM_001145719, intron 1 of 6) L1M5|LINE|L1 18314 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 132-74 chr6 143337475 143337581 + 2 NA intron (NM_001366361, intron 6 of 6) intron (NM_001366361, intron 6 of 6) 105149 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 295-397 chr6 28193317 28193500 + 2 NA Intergenic AluJr4|SINE|Alu 25521 NR_002936 222699 Hs.161441 NR_002936 TOB2P1 TOB2P|TOB4p|p373c6.3 transducer of ERBB2, 2 pseudogene 1 pseudo 132-4 chr1 187391478 187391573 + 2 NA Intergenic Intergenic -52103 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 137-71 chr5 30302605 30302674 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 422079 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 422-28 chr10 24342886 24343258 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 67387 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 245-53 chr10 70034077 70034276 + 2 NA Intergenic Intergenic -18670 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 535-110 chr18 3933408 3933784 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -28757 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 202-55 chr12 114557553 114557735 + 2 NA Intergenic Intergenic 126531 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 286-425 chr7 64713665 64713898 + 2 NA Intergenic L1MA8|LINE|L1 34717 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 250-99 chr12 114557121 114557313 + 2 NA Intergenic Intergenic 126958 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 417-179 chr3 99403710 99404043 + 2 NA Intergenic L1ME3F|LINE|L1 -234718 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 560-149 chr6 62596548 62596945 + 2 NA Intergenic ERVL-int|LTR|ERVL -310519 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 344-408 chr5 180250804 180250994 + 2 NA intron (NM_001364608, intron 6 of 12) intron (NM_001364608, intron 6 of 12) 29709 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 462-304 chrX 99773052 99773441 + 2 NA Intergenic L1MA1|LINE|L1 637027 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 343-193 chr17 26672911 26673243 + 2 NA Intergenic ALR/Alpha|Satellite|centr 416164 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 256-234 chr20 52731489 52731617 + 2 NA Intergenic Intergenic 110715 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 617-43 chr15 43385276 43385783 + 2 NA intron (NM_014444, intron 7 of 17) intron (NM_014444, intron 7 of 17) 14428 NM_001286414 27229 Hs.584887 NM_014444 ENSG00000137822 TUBGCP4 76P|GCP-4|GCP4|Grip76|MCCRP3 tubulin gamma complex associated protein 4 protein-coding 277-55 chr10 64902743 64902947 + 2 NA non-coding (NR_134456, exon 2 of 2) non-coding (NR_134456, exon 2 of 2) 21673 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 566-27 chr12 24078039 24078590 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -127282 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 345-147 chr14 42953778 42954021 + 2 NA Intergenic Intergenic 1347043 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 251-310 chr5 104805947 104806164 + 2 NA Intergenic L1PB4|LINE|L1 -293419 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 282-399 chr6 62308010 62308176 + 2 NA Intergenic L1MEc|LINE|L1 -21866 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 333-190 chr17 69308206 69308500 + 2 NA exon (NM_172232, exon 5 of 39) exon (NM_172232, exon 5 of 39) 7280 NM_018672 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 281-288 chr3 54540288 54540560 + 2 NA intron (NM_018398, intron 5 of 37) intron (NM_018398, intron 5 of 37) 99433 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 331-539 chr8 116222070 116222300 + 2 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 102874 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 306-25 chr1 112181619 112181888 + 2 NA Intergenic L2a|LINE|L2 191217 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 570-153 chr5 22293551 22293977 + 2 NA intron (NM_001364104, intron 2 of 13) L1MA8|LINE|L1 -79914 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 311-17 chr1 93401334 93401625 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -46639 NM_017737 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 246-359 chr7 14158730 14158899 + 2 NA intron (NM_001350717, intron 24 of 24) Tigger19b|DNA|TcMar-Tigger -167389 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 336-41 chr1 190329524 190329815 + 2 NA intron (NM_199051, intron 2 of 7) L1PA16|LINE|L1 146341 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 291-482 chr8 139995938 139996153 + 2 NA intron (NM_001160372, intron 18 of 22) L1MEf|LINE|L1 104490 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 405-260 chr5 127589957 127590272 + 2 NA Intergenic LTR103b_Mam|LTR|ERV1? -58907 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 480-192 chr3 109655145 109655490 + 2 NA Intergenic LTR1E|LTR|ERV1 52489 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 365-355 chr6 97715271 97715580 + 2 NA Intergenic Intergenic -309106 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 645-76 chr3 20146913 20147453 + 2 NA intron (NM_003884, intron 14 of 17) intron (NM_003884, intron 14 of 17) 9618 NR_036086 100422901 NR_036086 ENSG00000266745 MIR3135A MIR3135|hsa-mir-3135a microRNA 3135a ncRNA 343-404 chr4 164428095 164428374 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -44979 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 315-393 chr5 119982454 119982678 + 2 NA Intergenic HAL1b|LINE|L1 353007 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 295-20 chr1 165995346 165995575 + 2 NA Intergenic L3|LINE|CR1 87539 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 310-108 chr12 100752511 100752697 + 2 NA Intergenic Intergenic -42172 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 337-142 chr13 108921451 108921684 + 2 NA intron (NM_015011, intron 16 of 34) intron (NM_015011, intron 16 of 34) 245736 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 229-97 chr12 118964863 118965077 + 2 NA Intergenic Intergenic -16571 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 299-370 chr5 62985999 62986165 + 2 NA Intergenic L1PA16|LINE|L1 407263 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 354-436 chr7 71195622 71195864 + 2 NA intron (NM_022479, intron 1 of 10) AluJr|SINE|Alu 63599 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 607-157 chr9 84436478 84436946 + 2 NA Intergenic MIRb|SINE|MIR -67985 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 241-385 chr8 17043868 17044066 + 2 NA intron (NR_146233, intron 1 of 15) intron (NR_146233, intron 1 of 15) 16729 NM_001349810 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 585 chr1 15881922 15882311 + 2 NA intron (NM_015001, intron 3 of 14) intron (NM_015001, intron 3 of 14) -33969 NR_024279 729614 Hs.119298 NR_024279 ENSG00000179743 FLJ37453 - uncharacterized LOC729614 ncRNA 275-289 chr5 43904812 43904980 + 2 NA Intergenic Intergenic -301666 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 286-275 chr3 50985223 50985446 + 2 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) 310254 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 278-375 chr6 119773792 119773973 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 224074 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 240-270 chr21 46102205 46102342 + 2 NA intron (NM_058174, intron 1 of 27) L1MB3|LINE|L1 4154 NM_058175 1292 Hs.420269 NM_001849 ENSG00000142173 COL6A2 BTHLM1|PP3610|UCMD1 collagen type VI alpha 2 chain protein-coding 363-269 chr21 27172203 27172480 + 2 NA Intergenic Intergenic -205253 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 196-260 chr8 128316843 128316987 + 2 NA Intergenic Intergenic 166799 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 325-515 chr7 106349956 106350153 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -65071 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 339-28 chr1 158919942 158920164 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -11499 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 313-155 chr14 72761772 72761979 + 2 NA intron (NM_001280544, intron 2 of 9) L1ME1|LINE|L1 130774 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 718-60 chr4 31728767 31729268 + 2 NA Intergenic Intergenic 222473 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 174-91 chr3 104166047 104166159 + 2 NA Intergenic Intergenic -641987 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 408-329 chr8 26154855 26155144 + 2 NA Intergenic AluJb|SINE|Alu -109586 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 387-65 chr11 95395990 95396274 + 2 NA Intergenic L1MDa|LINE|L1 -163657 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 300-181 chr2 16146662 16146893 + 2 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat 96350 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 375-96 chr12 37277122 37277343 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1039542 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 341-473 chr6 145247171 145247455 + 2 NA Intergenic Intergenic 439564 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 376-415 chr8 131414385 131414759 + 2 NA Intergenic LTR101_Mam|LTR|ERVL -373663 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 390-3 chr1 31457841 31458062 + 2 NA Intergenic LTR10E|LTR|ERV1 -42134 NR_034112 149086 Hs.729905 NR_034112 ENSG00000260386 LDC1P LINC01225 leucine decarboxylase 1, pseudogene pseudo 257-396 chr7 116454482 116454720 + 2 NA Intergenic Intergenic -45137 NM_001206747 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 391-196 chr2 226367891 226368131 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 225217 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 283-476 chrX 57894561 57894766 + 2 NA Intergenic L1PB4|LINE|L1 15970 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 560-68 chr17 54105960 54106407 + 2 NA Intergenic L1PA16|LINE|L1 283256 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 290-221 chr2 136678968 136679120 + 2 NA Intergenic Intergenic -86501 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 485-58 chr12 125739708 125740015 + 2 NA Intergenic L1MA10|LINE|L1 117409 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 168-36 chr14 84354990 84355144 + 2 NA Intergenic L1MA3|LINE|L1 -916865 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 382-294 chr4 44959598 44959829 + 2 NA Intergenic L1PA15-16|LINE|L1 -233079 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 342-274 chr2 240530785 240530962 + 2 NA intron (NR_148698, intron 3 of 5) AluJr|SINE|Alu 27115 NM_017844 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 402-325 chr7 94829668 94830022 + 2 NA Intergenic L1MEg|LINE|L1 -77749 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 296-67 chr10 121383804 121384049 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 147388 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 351-116 chr14 34916725 34917024 + 2 NA intron (NR_151701, intron 4 of 4) intron (NR_151701, intron 4 of 4) -23048 NR_002937 280655 Hs.639271 NR_002937 IGBP1P1 C14orf19 immunoglobulin (CD79A) binding protein 1 pseudogene 1 pseudo 314-178 chr15 24695225 24695423 + 2 NA Intergenic Intergenic 19930 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 512-247 chr6 162314580 162314927 + 2 NA intron (NM_004562, intron 2 of 11) L3|LINE|CR1 -412379 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 574-84 chr2 144911888 144912278 + 2 NA intron (NR_033870, intron 3 of 4) L1PB4|LINE|L1 244116 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 382-196 chr2 67197688 67197960 + 2 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -15584 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 349-351 chr3 179952469 179952685 + 2 NA intron (NM_001349396, intron 1 of 13) L1P3|LINE|L1 21648 NM_001349406 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 455-27 chr10 59256624 59256978 + 2 NA intron (NM_001347845, intron 9 of 12) intron (NM_001347845, intron 9 of 12) 79334 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 274-214 chr2 102481618 102481824 + 2 NA intron (NM_001011552, intron 2 of 11) L1M5|LINE|L1 8495 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 295-227 chr2 139539346 139539556 + 2 NA Intergenic Intergenic 642127 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 340-93 chr11 116028210 116028545 + 2 NA Intergenic L1PB1|LINE|L1 -268177 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 247-70 chr11 116383993 116384160 + 2 NA Intergenic L1MC3|LINE|L1 -255346 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 216-214 chr3 54062446 54062615 + 2 NA Intergenic Intergenic -60022 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 247-355 chr6 46106914 46107150 + 2 NA intron (NM_001370650, intron 1 of 6) LTR49-int|LTR|ERV1 22787 NM_001370649 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 289-280 chr21 32161701 32161904 + 2 NA Intergenic Intergenic -75507 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 251-358 chr6 168432986 168433153 + 2 NA Intergenic Kanga1d|DNA|TcMar-Tc2 -8115 NM_001166412 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 196-130 chr2 104137162 104137322 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 271090 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 530-257 chr8 117321892 117322365 + 2 NA Intergenic L1PA16|LINE|L1 187133 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 234-7 chr1 73335852 73336012 + 2 NA non-coding (NR_110676, exon 4 of 4) non-coding (NR_110676, exon 4 of 4) 29762 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 309-348 chr3 72223618 72223887 + 2 NA Intergenic MLT2C1|LTR|ERVL 72495 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 272-67 chr11 11140522 11140747 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 212616 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 580-78 chr2 40286532 40286945 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 143566 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 201-59 chr12 38879510 38879675 + 2 NA intron (NM_153634, intron 1 of 19) intron (NM_153634, intron 1 of 19) 25999 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 363-447 chr8 100327048 100327337 + 2 NA intron (NM_001280539, intron 1 of 10) intron (NM_001280539, intron 1 of 10) 9012 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 505-331 chrX 100389623 100389956 + 2 NA intron (NM_020766, intron 2 of 4) L1ME4a|LINE|L1 20484 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 117-7 chr12 128281522 128281598 + 2 NA intron (NM_001136103, intron 1 of 8) LTR33A_|LTR|ERVL -12532 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 229-419 chr9 99585132 99585308 + 2 NA TTS (NR_109802) TTS (NR_109802) -209963 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 564-24 chr10 125481827 125482327 + 2 NA Intergenic Intergenic -92294 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 366-484 chrX 73350297 73350512 + 2 NA Intergenic L1PA15|LINE|L1 -96850 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 425-162 chr20 20142182 20142468 + 2 NA intron (NM_015585, intron 8 of 26) intron (NM_015585, intron 8 of 26) 85679 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 164-108 chr8 9157049 9157156 + 2 NA Intergenic L1ME4a|LINE|L1 -5563 NM_001201329 79660 Hs.458513 NM_024607 ENSG00000173281 PPP1R3B GL|PPP1R4|PTG protein phosphatase 1 regulatory subunit 3B protein-coding 260-291 chr3 155106029 155106161 + 2 NA intron (NM_000902, intron 3 of 22) intron (NM_000902, intron 3 of 22) 26084 NM_007289 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 194-63 chr15 25014276 25014425 + 2 NA intron (NR_146177, intron 20 of 147) intron (NR_146177, intron 20 of 147) -17523 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 364-403 chr7 7519921 7520169 + 2 NA intron (NM_001037763, intron 6 of 34) intron (NM_001037763, intron 6 of 34) 15828 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 308-513 chr8 123535574 123535864 + 2 NA intron (NM_058229, intron 1 of 8) intron (NM_058229, intron 1 of 8) -3576 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 339-463 chr5 130793509 130793755 + 2 NA Intergenic L1PB4|LINE|L1 371624 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 153-20 chr11 106036478 106036599 + 2 NA Intergenic Intergenic -14251 NM_001318747 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 342-169 chr15 97047379 97047713 + 2 NA Intergenic Intergenic 264111 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 458-180 chr4 14191695 14192069 + 2 NA Intergenic Intergenic 79914 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 151-19 chr11 116087973 116088086 + 2 NA Intergenic MIR|SINE|MIR -327829 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 246-299 chr4 81234424 81234590 + 2 NA Intergenic L2|LINE|L2 -19285 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 318-351 chr3 43524845 43525007 + 2 NA intron (NM_001346464, intron 12 of 13) L2|LINE|L2 97000 NM_001346466 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 287-308 chr5 27839111 27839339 + 2 NA Intergenic Intergenic 366933 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 554-62 chr12 87022452 87022888 + 2 NA Intergenic L1PA10|LINE|L1 -183670 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 256-127 chr14 72998998 72999212 + 2 NA intron (NM_021260, intron 2 of 11) AluJo|SINE|Alu -12149 NM_178441 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 426-87 chr15 77328161 77328556 + 2 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 91746 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 287-322 chr5 102008861 102009060 + 2 NA Intergenic Intergenic 287324 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 288-292 chr4 33076876 33077100 + 2 NA Intergenic Intergenic 725950 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 313-94 chr11 110928302 110928557 + 2 NA Intergenic Intergenic 168889 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 501-161 chr3 37356916 37357353 + 2 NA intron (NM_001172713, intron 22 of 22) intron (NM_001172713, intron 22 of 22) -29135 NM_178344 339883 Hs.475945 NM_178339 ENSG00000198590 C3orf35 APRG1 chromosome 3 open reading frame 35 protein-coding 447-26 chr10 55940198 55940552 + 2 NA Intergenic Intergenic -312433 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 249-122 chr14 68178091 68178287 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 354597 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 315-425 chr6 128572442 128572635 + 2 NA Intergenic Tigger10|DNA|TcMar-Tigger -51939 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 408-217 chr3 133129370 133129711 + 2 NA intron (NM_001282865, intron 1 of 3) intron (NM_001282865, intron 1 of 3) 4719 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 245-166 chr18 52488004 52488209 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 147909 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 354-35 chr1 231789487 231789694 + 2 NA intron (NM_001164547, intron 6 of 7) L2a|LINE|L2 28927 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 333-511 chr6 110576905 110577161 + 2 NA Intergenic AluSz|SINE|Alu -100420 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 238-368 chr8 5759952 5760133 + 2 NA Intergenic Intergenic 646506 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 347-247 chr2 151924381 151924648 + 2 NA intron (NM_000726, intron 2 of 13) AluJo|SINE|Alu 47538 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 138-24 chr15 26299112 26299183 + 2 NA Intergenic Intergenic 183334 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 222-302 chr5 91835186 91835381 + 2 NA Intergenic L1MA8|LINE|L1 -451966 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 371-417 chr9 101409289 101409533 + 2 NA exon (NM_001278231, exon 3 of 3) exon (NM_001278231, exon 3 of 3) 10557 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 207-290 chr8 77500227 77500383 + 2 NA Intergenic Intergenic 49608 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 429-227 chr5 23568136 23568492 + 2 NA Intergenic L2a|LINE|L2 60659 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 304-386 chr4 100879085 100879281 + 2 NA Intergenic LTR16|LTR|ERVL -204070 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 254-27 chr1 232778021 232778225 + 2 NA Intergenic Intergenic -26769 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 295-480 chr8 118358793 118359081 + 2 NA intron (NM_001363274, intron 4 of 4) intron (NM_001363274, intron 4 of 4) -247118 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 235-57 chr11 7049352 7049543 + 2 NA intron (NM_176822, intron 5 of 11) intron (NM_176822, intron 5 of 11) 28978 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 330-96 chr11 63358296 63358550 + 2 NA Intergenic L1PA12|LINE|L1 -11362 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 326-149 chr14 57095718 57095988 + 2 NA Intergenic MLT2B3|LTR|ERVL 173052 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 477-25 chr1 213810349 213810667 + 2 NA Intergenic Intergenic -114241 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 277-252 chr3 51771111 51771377 + 2 NA Intergenic L1MC2|LINE|L1 7993 NM_001143833 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 612-68 chr2 137333393 137333916 + 2 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 568109 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 521-117 chr2 24329598 24330002 + 2 NA intron (NM_001348182, intron 1 of 38) intron (NM_001348182, intron 1 of 38) 30736 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 388-14 chr1 105145989 105146264 + 2 NA Intergenic Intergenic 472809 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 303-165 chr16 82453460 82453755 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -173362 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 301-350 chr5 26976171 26976393 + 2 NA intron (NM_016279, intron 2 of 11) L1MC4|LINE|L1 62304 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 209-149 chr2 61011480 61011627 + 2 NA intron (NM_144709, intron 2 of 17) intron (NM_144709, intron 2 of 17) 5659 NM_001322124 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 365-393 chr8 46351536 46351873 + 2 NA Intergenic ALR/Alpha|Satellite|centr 265939 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 308-369 chr5 3692249 3692409 + 2 NA Intergenic Intergenic 96497 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 255-43 chr10 118012784 118013014 + 2 NA intron (NM_014904, intron 4 of 4) intron (NM_014904, intron 4 of 4) -33922 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 481-205 chr3 118141752 118142175 + 2 NA Intergenic L1PA4|LINE|L1 -451038 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 655-7 chr1 106712762 106713257 + 2 NA Intergenic MER70A|LTR|ERVL -105230 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 357-27 chr10 10440300 10440552 + 2 NA intron (NR_120637, intron 1 of 3) intron (NR_120637, intron 1 of 3) 21923 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 288-162 chr18 66690123 66690386 + 2 NA Intergenic MER41-int|LTR|ERV1 -86164 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 808-13 chr14 43524999 43525478 + 2 NA Intergenic Intergenic 982045 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 342-234 chr2 57736016 57736313 + 2 NA Intergenic MIR|SINE|MIR -171487 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 445-48 chr12 17357933 17358317 + 2 NA Intergenic Intergenic 230953 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 322-17 chr1 84316852 84317085 + 2 NA intron (NM_001134663, intron 2 of 3) L1MB1|LINE|L1 14317 NM_001134664 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 533-43 chr12 126620894 126621359 + 2 NA Intergenic Intergenic 69192 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 328-315 chr20 40838144 40838469 + 2 NA Intergenic Intergenic -123683 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 329-58 chr10 61356493 61356727 + 2 NA Intergenic Intergenic -96029 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 319-17 chr1 107317501 107317687 + 2 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 169525 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 324-442 chr5 159242760 159243044 + 2 NA intron (NR_134261, intron 2 of 2) L2b|LINE|L2 15187 NR_134261 105377682 NR_134261 ENSG00000253315 LINC01932 - long intergenic non-protein coding RNA 1932 ncRNA 640-30 chr13 97512776 97513250 + 2 NA Intergenic L1PA16|LINE|L1 78844 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 386-155 chr2 2338658 2338951 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -7529 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 311-257 chr2 82063300 82063571 + 2 NA Intergenic Intergenic -596489 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 170-54 chr15 69576912 69577041 + 2 NA Intergenic Intergenic -15224 NR_126438 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 183-133 chr6 56880183 56880317 + 2 NA intron (NM_001144769, intron 3 of 96) intron (NM_001144769, intron 3 of 96) -28334 NM_001144770 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 178-13 chr1 239881559 239881698 + 2 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 18244 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 194-12 chr1 112048032 112048171 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 57565 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 247-324 chr5 56634141 56634305 + 2 NA Intergenic LTR16A1|LTR|ERVL -27967 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 167-69 chr20 15692689 15692797 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 230571 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 352-535 chr8 95401999 95402311 + 2 NA intron (NR_038209, intron 2 of 3) intron (NR_038209, intron 2 of 3) -132954 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 242-212 chr20 18977600 18977771 + 2 NA Intergenic L1MEf|LINE|L1 -147482 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 371-9 chr1 73090760 73091126 + 2 NA Intergenic L1MA3|LINE|L1 -215227 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 326-26 chr1 112841203 112841491 + 2 NA intron (NR_103746, intron 2 of 6) L2a|LINE|L2 9296 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 566-33 chr12 52760483 52760852 + 2 NA Intergenic LTR16|LTR|ERVL 16678 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 361-287 chr3 94201510 94201787 + 2 NA Intergenic L1PB1|LINE|L1 138587 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 312-106 chr12 47053497 47053710 + 2 NA Intergenic L2c|LINE|L2 -26000 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 375-40 chr10 38506142 38506350 + 2 NA Intergenic Intergenic 78100 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 340-385 chr3 183599082 183599308 + 2 NA Intergenic Intergenic -36428 NM_001349417 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 298-85 chr11 125409699 125409950 + 2 NA intron (NM_022062, intron 7 of 12) MER5B|DNA|hAT-Charlie -85390 NM_001301851 403312 Hs.450611 NM_203452 LOC403312 - putative uncharacterized protein MGC39545 protein-coding 380-401 chr8 101936506 101936766 + 2 NA intron (NM_001040624, intron 3 of 7) MER5B|DNA|hAT-Charlie -47796 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 423-229 chr5 89410865 89411206 + 2 NA intron (NR_136221, intron 5 of 6) L2c|LINE|L2 -506930 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 367-342 chr5 7374379 7374594 + 2 NA Intergenic Intergenic -21652 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 223-215 chr3 77895850 77896031 + 2 NA Intergenic L2a|LINE|L2 153023 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 330-133 chr12 130158928 130159118 + 2 NA intron (NR_033834, intron 1 of 3) intron (NR_033834, intron 1 of 3) 2655 NR_033834 440119 Hs.288262 NR_033834 ENSG00000250208 FZD10-AS1 FZD10-DT FZD10 antisense divergent transcript ncRNA 622-4 chr1 198282824 198283361 + 2 NA intron (NM_133494, intron 7 of 9) L2a|LINE|L2 126094 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 184-167 chr8 66306819 66306980 + 2 NA Intergenic MamRep605|LTR?|LTR? 114785 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 470-298 chrX 85794296 85794689 + 2 NA Intergenic L1PA3|LINE|L1 -41288 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 569-37 chr11 59231802 59232357 + 2 NA Intergenic MER51-int|LTR|ERV1 -19152 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 217-303 chr5 96059918 96060098 + 2 NA intron (NR_130776, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL -19130 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 489-108 chr17 65151225 65151572 + 2 NA intron (NM_003835, intron 1 of 18) intron (NM_003835, intron 1 of 18) 14028 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 383-151 chr17 14359879 14360089 + 2 NA Intergenic MLT2B1|LTR|ERVL 56244 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 493-110 chr17 65012305 65012785 + 2 NA 3' UTR (NM_001282425, exon 4 of 4) 3' UTR (NM_001282425, exon 4 of 4) -36960 NR_026903 201283 Hs.396447 NM_153032 ENSG00000214174 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 177-155 chr7 129078828 129078975 + 2 NA Intergenic L1ME1|LINE|L1 23678 NR_002187 286016 Hs.369665 NR_002187 ENSG00000230359 TPI1P2 - triosephosphate isomerase 1 pseudogene 2 pseudo 213-96 chr15 27478553 27478736 + 2 NA intron (NM_001270873, intron 5 of 5) L1MB7|LINE|L1 -317325 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 245-373 chr9 106171938 106172124 + 2 NA Intergenic L1M5|LINE|L1 -428897 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 310-413 chr5 90285442 90285653 + 2 NA intron (NR_120601, intron 1 of 5) L2c|LINE|L2 4524 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 679-101 chr7 54296778 54297258 + 2 NA Intergenic Intergenic -33679 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 176-89 chr3 143256605 143256724 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger -85582 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 334-418 chr5 38162686 38162865 + 2 NA intron (NR_147009, intron 2 of 2) MIRb|SINE|MIR 14295 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 817-30 chr21 30889603 30890372 + 2 NA Intergenic Intergenic -8407 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 453-81 chr15 88153655 88154080 + 2 NA intron (NM_001007156, intron 5 of 15) MLT1A0|LTR|ERVL-MaLR 52107 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 215-251 chr5 27313337 27313486 + 2 NA Intergenic Intergenic -158881 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 210-129 chr2 68468285 68468439 + 2 NA intron (NM_173545, intron 1 of 9) (TTAT)n|Simple_repeat|Simple_repeat 777 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 236-229 chr3 94724353 94724505 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -213834 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 385-335 chr6 104430382 104430620 + 2 NA Intergenic L2|LINE|L2 429045 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 384-323 chr6 132887606 132887907 + 2 NA Intergenic AluJr|SINE|Alu 70537 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 363-329 chr4 62637698 62638036 + 2 NA Intergenic Intergenic -476102 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 306-102 chr12 42842548 42842714 + 2 NA Intergenic L1MA9|LINE|L1 150415 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 327-289 chr2 239971213 239971499 + 2 NA intron (NM_001322020, intron 8 of 8) intron (NM_001322020, intron 8 of 8) -28262 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 764-36 chr2 80970787 80971328 + 2 NA Intergenic L1PA16|LINE|L1 495889 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 423-319 chrX 21418401 21418718 + 2 NA intron (NM_001168648, intron 1 of 20) L1MA2|LINE|L1 44141 NM_001330772 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 551-200 chr7 120293741 120294099 + 2 NA intron (NM_012281, intron 1 of 5) intron (NM_012281, intron 1 of 5) 20745 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 194-102 chr2 176734263 176734415 + 2 NA Intergenic L1ME3A|LINE|L1 96585 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 490-90 chr14 66317533 66317858 + 2 NA Intergenic L1MA5|LINE|L1 -168676 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 188-115 chr20 35711361 35711501 + 2 NA intron (NR_040722, intron 13 of 17) intron (NR_040722, intron 13 of 17) 12026 NM_080748 140823 Hs.472564 NM_080748 ENSG00000125995 ROMO1 C20orf52|MTGM|MTGMP|bA353C18.2 reactive oxygen species modulator 1 protein-coding 369-143 chr16 8246801 8247033 + 2 NA Intergenic L1M5|LINE|L1 342921 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 384-264 chr4 67173601 67173901 + 2 NA Intergenic Intergenic 248249 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 678-59 chr20 48443964 48444496 + 2 NA Intergenic L1MEf|LINE|L1 84319 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 318-557 chr8 129732303 129732615 + 2 NA Intergenic L1PA15-16|LINE|L1 -52220 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 201-127 chr2 162826505 162826674 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) 12178 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 446-210 chr4 23625650 23626015 + 2 NA Intergenic L1PA16|LINE|L1 255460 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 279-175 chr2 62745621 62745809 + 2 NA intron (NM_001142615, intron 2 of 22) MER102c|DNA|hAT-Charlie 38818 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 215-70 chr13 41177552 41177704 + 2 NA intron (NR_120423, intron 3 of 3) intron (NR_120423, intron 3 of 3) 16941 NM_032138 84078 Hs.63841 NM_032138 ENSG00000120696 KBTBD7 - kelch repeat and BTB domain containing 7 protein-coding 195-153 chr3 169642973 169643099 + 2 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 20676 NM_001205194 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 279-258 chr3 75046561 75046749 + 2 NA Intergenic MER57A1|LTR|ERV1 -167821 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 325-491 chr7 7488345 7488620 + 2 NA intron (NM_001037763, intron 13 of 34) intron (NM_001037763, intron 13 of 34) 47391 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 353-513 chr8 51161198 51161511 + 2 NA Intergenic Intergenic 648091 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 439-42 chr10 122018060 122018361 + 2 NA intron (NM_206862, intron 1 of 22) L1PA8A|LINE|L1 29047 NM_206861 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 674-13 chr10 120796519 120796948 + 2 NA intron (NR_033850, intron 1 of 2) intron (NR_033850, intron 1 of 2) 54446 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 323-568 chr8 138127295 138127515 + 2 NA Intergenic Intergenic -43860 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 365-202 chr2 116313392 116313668 + 2 NA Intergenic Intergenic 969715 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 1033-4 chr16 27130442 27131256 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy 63922 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 654-98 chr5 108246627 108247048 + 2 NA intron (NM_001163315, intron 4 of 8) intron (NM_001163315, intron 4 of 8) 135261 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 644-106 chr8 116399750 116400272 + 2 NA Intergenic LTR47A2|LTR|ERVL -74952 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 506-133 chr2 46164058 46164544 + 2 NA intron (NM_005400, intron 14 of 14) intron (NM_005400, intron 14 of 14) -133106 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 249-434 chr8 133669062 133669244 + 2 NA intron (NR_134462, intron 1 of 2) intron (NR_134462, intron 1 of 2) 14913 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 295-300 chr3 97169336 97169529 + 2 NA intron (NM_001080448, intron 3 of 17) MamRep137|DNA|TcMar? -270175 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 493-293 chr8 37105106 37105554 + 2 NA Intergenic Intergenic 320956 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 474-310 chr9 122104969 122105340 + 2 NA Intergenic MIR|SINE|MIR -11548 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 522-143 chr2 121251582 121252000 + 2 NA intron (NM_014553, intron 2 of 14) L1MA8|LINE|L1 33411 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 363-277 chr22 48143362 48143686 + 2 NA Intergenic MIRb|SINE|MIR -130840 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 251-173 chr2 80386111 80386316 + 2 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 72834 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 305-5 chr1 46714235 46714399 + 2 NA intron (NM_014774, intron 2 of 10) intron (NM_014774, intron 2 of 10) 4797 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 357-76 chr11 129166144 129166393 + 2 NA intron (NM_001142685, intron 1 of 21) L1ME3|LINE|L1 25930 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 283-359 chr5 56052580 56052741 + 2 NA Intergenic Intergenic 57493 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 232-347 chr7 28341241 28341427 + 2 NA intron (NM_182899, intron 1 of 9) L3b|LINE|CR1 42013 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 327-88 chr11 58476451 58476732 + 2 NA Intergenic L1MB8|LINE|L1 31514 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 416-313 chr7 66201619 66201924 + 2 NA Intergenic AluJo|SINE|Alu -3563 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 478-155 chr2 195786807 195787213 + 2 NA exon (NM_018897, exon 58 of 65) exon (NM_018897, exon 58 of 65) 129784 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 317-315 chr3 118385305 118385520 + 2 NA Intergenic Intergenic -256356 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 301-42 chr10 66682276 66682488 + 2 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -243654 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 172-14 chr10 57249009 57249135 + 2 NA Intergenic Intergenic 55487 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 472-72 chr13 49081717 49082002 + 2 NA intron (NM_001079673, intron 3 of 25) intron (NM_001079673, intron 3 of 25) -28458 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 377-322 chr5 51548559 51548903 + 2 NA Intergenic Intergenic 165283 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 271-342 chr5 52901316 52901543 + 2 NA intron (NM_181501, intron 11 of 28) MLT1D|LTR|ERVL-MaLR -87923 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 282-405 chr6 80985800 80986045 + 2 NA Intergenic Intergenic 766759 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 398-315 chr7 10646244 10646589 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -56260 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 329-121 chr12 46526255 46526557 + 2 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 142299 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 243-181 chr18 67185969 67186173 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 104487 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 249-42 chr10 34710101 34710252 + 2 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 105120 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 385-313 chr5 174644656 174644906 + 2 NA Intergenic L1ME4c|LINE|L1 -79801 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 186-164 chr8 93300209 93300352 + 2 NA Intergenic L2a|LINE|L2 -133430 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 562-135 chr3 7666356 7666833 + 2 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -131310 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 446-169 chr20 60742101 60742441 + 2 NA Intergenic L1MB7|LINE|L1 177709 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 244-317 chr6 43904285 43904505 + 2 NA intron (NR_024478, intron 1 of 1) intron (NR_024478, intron 1 of 1) 13367 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 HI-LNC77 long intergenic non-protein coding RNA 1512 ncRNA 362-39 chr1 241178366 241178597 + 2 NA intron (NM_001282778, intron 2 of 16) L2a|LINE|L2 46209 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 194-194 chr6 159895620 159895756 + 2 NA intron (NM_001366704, intron 1 of 1) L1M5|LINE|L1 4700 NM_002377 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 192-64 chr14 55270142 55270262 + 2 NA Intergenic L1ME4a|LINE|L1 -1219 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 258-243 chr22 21771058 21771225 + 2 NA intron (NM_002745, intron 7 of 8) AluSz|SINE|Alu -35347 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 163-122 chr8 84517717 84517872 + 2 NA intron (NM_001354308, intron 2 of 9) MIRb|SINE|MIR 102310 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 327-284 chr2 207148005 207148180 + 2 NA intron (NM_001270943, intron 1 of 3) intron (NM_001270943, intron 1 of 3) -13955 NM_001270944 8609 Hs.59908 NM_003709 ENSG00000118263 KLF7 UKLF Kruppel like factor 7 protein-coding 221-2 chr1 45055264 45055456 + 2 NA intron (NM_020883, intron 4 of 13) AluSx1|SINE|Alu 43106 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 292-426 chr8 72006033 72006283 + 2 NA intron (NR_033652, intron 4 of 4) L1PB3|LINE|L1 69426 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 485-79 chr14 65403710 65404035 + 2 NA Intergenic Intergenic -6720 NR_038167 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 209-275 chr6 80995003 80995180 + 2 NA Intergenic L1ME1|LINE|L1 757590 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 271-331 chr5 12355878 12356113 + 2 NA Intergenic L2a|LINE|L2 -218862 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 433-58 chr12 38790137 38790428 + 2 NA intron (NM_153634, intron 6 of 19) L1MA2|LINE|L1 115309 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 191-155 chr4 134854393 134854557 + 2 NA Intergenic L1ME1|LINE|L1 269084 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 384-97 chr13 72028100 72028423 + 2 NA Intergenic MLT2D|LTR|ERVL -161057 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 182-165 chr8 32942061 32942236 + 2 NA Intergenic L1M2|LINE|L1 220313 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 476-173 chr3 3818904 3819315 + 2 NA intron (NM_001324188, intron 2 of 2) AluJo|SINE|Alu -18234 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 332-520 chr8 63927154 63927409 + 2 NA intron (NR_125826, intron 4 of 4) L1MEd|LINE|L1 157851 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 256-132 chr14 98788942 98789105 + 2 NA Intergenic Intergenic 77410 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 252-383 chr6 154602977 154603221 + 2 NA Intergenic Intergenic -92414 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 182-38 chr12 39225664 39225775 + 2 NA Intergenic Intergenic 217401 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 377-150 chr16 65570463 65570702 + 2 NA intron (NR_027755, intron 2 of 8) L1MB8|LINE|L1 5718 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 230-363 chr7 135463985 135464179 + 2 NA intron (NM_013316, intron 1 of 10) L1PA14|LINE|L1 46020 NM_013316 4850 Hs.490224 NM_013316 ENSG00000080802 CNOT4 CLONE243|NOT4|NOT4H CCR4-NOT transcription complex subunit 4 protein-coding 334-344 chr3 63394082 63394397 + 2 NA intron (NM_001130003, intron 2 of 5) MIRb|SINE|MIR -49073 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 658-57 chr18 39457365 39457932 + 2 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 164527 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 330-164 chr14 83967451 83967678 + 2 NA Intergenic L1P4|LINE|L1 -1304368 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 462-10 chr1 108868844 108869281 + 2 NA Intergenic Intergenic -7923 NM_001321038 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 390-372 chr8 55401646 55401971 + 2 NA intron (NM_052898, intron 2 of 2) Charlie1b|DNA|hAT-Charlie 53513 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 299-349 chr4 183137050 183137345 + 2 NA intron (NM_024949, intron 1 of 22) Tigger3b|DNA|TcMar-Tigger 37940 NM_024949 80014 Hs.333179 NM_024949 ENSG00000151718 WWC2 BOMB WW and C2 domain containing 2 protein-coding 441-172 chr4 5377616 5378042 + 2 NA intron (NM_001306082, intron 5 of 12) THE1D|LTR|ERVL-MaLR -146740 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 326-529 chr8 82079471 82079650 + 2 NA Intergenic L1P4|LINE|L1 -237274 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 329-352 chr3 17953730 17953953 + 2 NA Intergenic L1MEd|LINE|L1 -8711 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 219-378 chr9 28918826 28918984 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -29950 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 386-200 chr2 229084064 229084366 + 2 NA intron (NM_001330157, intron 1 of 1) intron (NM_001330157, intron 1 of 1) 147877 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 250-209 chr2 76683794 76683989 + 2 NA Intergenic L1MC|LINE|L1 -302074 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 422-93 chr15 33555044 33555337 + 2 NA intron (NM_001243996, intron 10 of 102) intron (NM_001243996, intron 10 of 102) 244223 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 243-368 chr5 120588503 120588696 + 2 NA intron (NM_001308088, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 57135 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 362-141 chr14 23418754 23418936 + 2 NA promoter-TSS (NR_030624) promoter-TSS (NR_030624) -782 NR_030624 100126336 NR_030624 ENSG00000215991 MIR208B MIRN208B|mir-208b microRNA 208b ncRNA 192-66 chr14 60829166 60829350 + 2 NA intron (NM_002431, intron 6 of 7) MER21C|LTR|ERVL 94497 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 379-52 chr11 19001696 19002004 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 58167 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 306-540 chr9 13820683 13820900 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -107180 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 620-57 chr19 37423227 37423744 + 2 NA intron (NM_001330482, intron 4 of 4) intron (NM_001330482, intron 4 of 4) 43959 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 514-246 chr6 19332646 19333040 + 2 NA Intergenic Intergenic -116978 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 223-69 chr12 122501580 122501721 + 2 NA promoter-TSS (NM_017612) promoter-TSS (NM_017612) -718 NM_017612 55596 Hs.37706 NM_017612 ENSG00000033030 ZCCHC8 - zinc finger CCHC-type containing 8 protein-coding 312-424 chr5 105842079 105842292 + 2 NA Intergenic MER66-int|LTR|ERV1 742711 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 205-202 chr4 61661621 61661766 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 459521 NM_001371342 202-85 chr16 5676227 5676386 + 2 NA Intergenic Intergenic 43839 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 212-18 chr1 177569991 177570128 + 2 NA Intergenic L2a|LINE|L2 -130465 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 485-103 chr17 26805358 26805665 + 2 NA Intergenic Intergenic 283730 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 279-107 chr14 82372821 82372996 + 2 NA Intergenic L1MA2|LINE|L1 -269724 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 133-77 chr7 110839225 110839351 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -251718 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 362-458 chr9 35241962 35242273 + 2 NA intron (NM_006377, intron 5 of 38) intron (NM_006377, intron 5 of 38) 80108 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 436-324 chr9 1260622 1260926 + 2 NA Intergenic Intergenic 209287 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 291-193 chr19 28804466 28804748 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -76913 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 591-99 chr3 130737341 130737859 + 2 NA intron (NM_014602, intron 2 of 19) AluSz|SINE|Alu 9229 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 161-69 chr3 109384319 109384473 + 2 NA Intergenic Intergenic -25594 NR_109842 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 372-196 chr17 74521118 74521332 + 2 NA TTS (NM_174892) TTS (NM_174892) 10250 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 209-279 chr6 126568234 126568338 + 2 NA Intergenic L1MA8|LINE|L1 83655 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 636-51 chr15 38667074 38667660 + 2 NA Intergenic Intergenic -29231 NR_160786 239-242 chr3 67342133 67342353 + 2 NA Intergenic Intergenic 116779 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 350-485 chr7 85715474 85715666 + 2 NA Intergenic Intergenic 294448 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 408-137 chr17 33355412 33355642 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -62539 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 223-61 chr12 15168888 15169046 + 2 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) 17044 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 570-139 chr3 121130441 121130863 + 2 NA intron (NR_145517, intron 7 of 8) ERVL-E-int|LTR|ERVL 81012 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 486-266 chr6 159222395 159222754 + 2 NA intron (NM_032532, intron 6 of 22) intron (NM_032532, intron 6 of 22) -52567 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 443-70 chr12 64607651 64608079 + 2 NA Intergenic AluJr|SINE|Alu -2630 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 382-435 chr9 71626833 71627182 + 2 NA Intergenic L2b|LINE|L2 141506 NM_001349784 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 239-428 chr8 137300955 137301182 + 2 NA Intergenic Intergenic 112520 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 367-163 chr17 34594381 34594711 + 2 NA intron (NM_001304438, intron 1 of 8) MIR|SINE|MIR 13797 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 320-192 chr16 63021002 63021256 + 2 NA Intergenic Intergenic -984691 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 328-170 chr15 43784323 43784623 + 2 NA intron (NM_001199877, intron 1 of 4) AluYc|SINE|Alu 7387 NM_001199877 10169 Hs.424126 NM_005770 ENSG00000140264 SERF2 4F5REL|FAM2C|H4F5REL|HsT17089 small EDRK-rich factor 2 protein-coding 302-277 chr3 21195023 21195204 + 2 NA Intergenic Intergenic -210613 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 258-145 chr15 67143791 67144001 + 2 NA intron (NM_001145103, intron 1 of 8) AluSx3|SINE|Alu 5875 NM_001145103 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 632-94 chr5 40049267 40049630 + 2 NA Intergenic L2|LINE|L2 -2843 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 202-177 chr3 172924523 172924672 + 2 NA intron (NM_031955, intron 7 of 10) intron (NM_031955, intron 7 of 10) 173595 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 202-61 chr13 113586326 113586490 + 2 NA intron (NM_007111, intron 2 of 11) intron (NM_007111, intron 2 of 11) 1655 NM_007111 7027 Hs.79353 NM_007111 ENSG00000198176 TFDP1 DILC|DP1|DRTF1|Dp-1 transcription factor Dp-1 protein-coding 412-229 chr4 35607479 35607831 + 2 NA Intergenic Intergenic 636284 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 429-236 chr5 64219933 64220279 + 2 NA intron (NM_001113561, intron 5 of 7) L1ME1|LINE|L1 54263 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 315-470 chr8 57719021 57719184 + 2 NA Intergenic Intergenic -27047 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 535-216 chr6 60642525 60642969 + 2 NA Intergenic Intergenic -931383 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 527-65 chr12 127953837 127954236 + 2 NA intron (NR_126452, intron 2 of 3) L1PA13|LINE|L1 29855 NR_126452 104472718 Hs.628661 NR_126452 LINC00508 - long intergenic non-protein coding RNA 508 ncRNA 316-404 chr4 93147787 93147976 + 2 NA intron (NM_001286838, intron 3 of 14) intron (NM_001286838, intron 3 of 14) -680872 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 323-594 chrX 57031772 57032016 + 2 NA Intergenic L1MA3|LINE|L1 -36353 NM_001010862 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 280-315 chr5 25753999 25754219 + 2 NA Intergenic MER101-int|LTR|ERV1 563156 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 384-115 chr14 82208392 82208592 + 2 NA Intergenic L1MA3|LINE|L1 -434140 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 240-219 chr2 80936729 80936888 + 2 NA Intergenic L1MB5|LINE|L1 530138 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 335-77 chr10 128334821 128335025 + 2 NA Intergenic AluSx1|SINE|Alu 48973 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 213-214 chr4 96078236 96078376 + 2 NA Intergenic Intergenic -232397 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 112-21 chr18 6038653 6038730 + 2 NA intron (NM_001365767, intron 16 of 16) intron (NM_001365767, intron 16 of 16) -142737 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 547-69 chr14 64698248 64698692 + 2 NA Intergenic Intergenic -5954 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 407-194 chr3 68302544 68302914 + 2 NA intron (NM_001252216, intron 2 of 4) MIRb|SINE|MIR -197908 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 290-112 chr12 112814360 112814605 + 2 NA intron (NM_001347955, intron 2 of 20) L3|LINE|CR1 22734 NM_001347955 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 764-31 chr16 80642350 80642998 + 2 NA intron (NM_152342, intron 2 of 6) THE1A|LTR|ERVL-MaLR -69866 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 489-197 chr4 115472668 115473032 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -359230 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 242-172 chr2 49818840 49819047 + 2 NA Intergenic L2|LINE|L2 155260 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 420-9 chr1 70621172 70621533 + 2 NA Intergenic L1MC1|LINE|L1 -85101 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 257-344 chr6 36076531 36076705 + 2 NA intron (NM_001315, intron 8 of 11) intron (NM_001315, intron 8 of 11) 48810 NM_139013 1432 Hs.485233 NM_001315 ENSG00000112062 MAPK14 CSBP|CSBP1|CSBP2|CSPB1|EXIP|Mxi2|PRKM14|PRKM15|RK|SAPK2A|p38|p38ALPHA mitogen-activated protein kinase 14 protein-coding 328-442 chr5 35023261 35023464 + 2 NA intron (NM_031900, intron 9 of 13) MIR|SINE|MIR 24587 NM_001306173 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 404-135 chr18 1057979 1058359 + 2 NA Intergenic L1MA9|LINE|L1 -130176 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 408-66 chr11 56147149 56147420 + 2 NA Intergenic Intergenic -9566 NM_001004064 81168 Hs.554523 NM_001004064 ENSG00000167822 OR8J3 OR11-173 olfactory receptor family 8 subfamily J member 3 protein-coding 342-67 chr10 64728413 64728742 + 2 NA Intergenic MIRb|SINE|MIR -96951 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 582-50 chr17 3203636 3204173 + 2 NA Intergenic L1M3d|LINE|L1 6387 NM_012352 26189 Hs.532660 NM_012352 ENSG00000172150 OR1A2 OR17-6 olfactory receptor family 1 subfamily A member 2 protein-coding 312-194 chr17 74533807 74534040 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -2448 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 247-215 chr2 132528821 132528968 + 2 NA intron (NM_001508, intron 1 of 1) L1PA4|LINE|L1 95183 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 516-111 chr19 30929051 30929421 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -238274 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 270-98 chr13 69422239 69422436 + 2 NA Intergenic LTR65|LTR|ERV1 199991 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 340-50 chr10 54163534 54163732 + 2 NA intron (NM_001354411, intron 14 of 34) intron (NM_001354411, intron 14 of 34) -322597 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 337-6 chr1 62876929 62877172 + 2 NA Intergenic Intergenic 92918 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 229-320 chr5 141355781 141355998 + 2 NA exon (NM_032053, exon 1 of 1) exon (NM_032053, exon 1 of 1) 868 NM_032053 56111 Hs.368160 NM_018917 ENSG00000262576 PCDHGA4 PCDH-GAMMA-A4 protocadherin gamma subfamily A, 4 protein-coding 365-120 chr14 53246138 53246494 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 92962 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 350-385 chr5 16401285 16401506 + 2 NA intron (NR_104625, intron 7 of 8) Tigger1|DNA|TcMar-Tigger 39707 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 580-188 chr7 89693630 89694070 + 2 NA Intergenic Intergenic -425550 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 259-142 chr15 97068099 97068273 + 2 NA Intergenic Intergenic 284751 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 300-193 chr2 72760460 72760629 + 2 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 65489 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 384-199 chr2 237653909 237654142 + 2 NA intron (NM_001137550, intron 1 of 23) L1MA8|LINE|L1 26438 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 381-79 chr12 3924687 3925009 + 2 NA Intergenic Intergenic -51400 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 445-240 chr6 120696517 120696815 + 2 NA Intergenic L1MEf|LINE|L1 637814 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 344-66 chr10 123678829 123679064 + 2 NA intron (NM_153442, intron 2 of 2) intron (NM_153442, intron 2 of 2) 12591 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 128-46 chr4 128411780 128411850 + 2 NA Intergenic L1P4a|LINE|L1 -16201 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 388-294 chr5 162688159 162688482 + 2 NA Intergenic L1PA7|LINE|L1 620678 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 412-122 chr17 61073105 61073451 + 2 NA intron (NM_001330413, intron 20 of 25) intron (NM_001330413, intron 20 of 25) 294426 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 249-426 chr8 115791403 115791600 + 2 NA Intergenic L1M1|LINE|L1 -122526 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 544-60 chr13 25881353 25881837 + 2 NA intron (NM_016529, intron 33 of 36) (GA)n|Simple_repeat|Simple_repeat 169465 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 334-587 chrX 73369057 73369257 + 2 NA Intergenic L1PA15|LINE|L1 -78097 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 416 chr1 4900880 4901095 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 246378 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 191-208 chr8 77792509 77792658 + 2 NA Intergenic Intergenic 341886 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 341-233 chr2 23171358 23171565 + 2 NA Intergenic L1MEb|LINE|L1 -213718 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 332-517 chr8 49582044 49582306 + 2 NA Intergenic MER52D|LTR|ERV1 -69995 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 313-311 chr21 15121466 15121659 + 2 NA Intergenic L2a|LINE|L2 -56562 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 392-24 chr10 31167474 31167699 + 2 NA Intergenic Intergenic -20297 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 284-251 chr22 47073109 47073338 + 2 NA intron (NM_001284305, intron 11 of 12) intron (NM_001284305, intron 11 of 12) -157181 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 341-99 chr11 115452751 115452980 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 51550 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 282-120 chr14 26355132 26355306 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 198211 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 320-300 chr20 3494168 3494400 + 2 NA intron (NM_001323332, intron 1 of 25) intron (NM_001323332, intron 1 of 25) 23266 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 280-361 chr6 141706597 141706840 + 2 NA Intergenic MER53|DNA|hAT 382081 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 768-27 chr19 29176741 29177321 + 2 NA Intergenic L1MA2|LINE|L1 36120 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 288-425 chr7 134387519 134387727 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -70693 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 748-90 chrX 79189153 79189664 + 2 NA Intergenic L1MB3|LINE|L1 18436 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 365-326 chr5 98009758 98010051 + 2 NA Intergenic Intergenic 151335 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 389-225 chr3 64183753 64184059 + 2 NA intron (NM_001370528, intron 2 of 7) intron (NM_001370528, intron 2 of 7) -3638 NR_046702 100874243 Hs.670840 NR_046702 ENSG00000226017 PRICKLE2-AS3 - PRICKLE2 antisense RNA 3 ncRNA 621-77 chr3 80027858 80028316 + 2 NA Intergenic MamRep1894|DNA|hAT -260089 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 240-403 chr7 93698174 93698343 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -18670 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 297-525 chrX 81650403 81650609 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 448404 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 259-157 chr17 6113244 6113446 + 2 NA intron (NM_015253, intron 7 of 8) L1MA5|LINE|L1 42731 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 485-300 chr8 137751476 137751885 + 2 NA Intergenic Intergenic 331865 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 344-213 chr19 42494531 42494775 + 2 NA intron (NR_073180, intron 2 of 2) MER41-int|LTR|ERV1 33828 NM_001712 634 Hs.512682 NM_001712 ENSG00000079385 CEACAM1 BGP|BGP1|BGPI carcinoembryonic antigen related cell adhesion molecule 1 protein-coding 166-102 chr5 166187415 166187554 + 2 NA Intergenic Intergenic 738886 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 254-368 chr7 10883639 10883852 + 2 NA Intergenic L1PA15|LINE|L1 56408 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 266-329 chr5 51322526 51322767 + 2 NA Intergenic L3|LINE|CR1 60686 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 121-50 chr5 15250853 15250962 + 2 NA intron (NR_109944, intron 1 of 2) intron (NR_109944, intron 1 of 2) 15653 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 227-382 chr8 139522586 139522738 + 2 NA Intergenic L1MA5A|LINE|L1 180461 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 314-218 chr16 87221452 87221637 + 2 NA intron (NR_110939, intron 2 of 2) intron (NR_110939, intron 2 of 2) 9429 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 225-401 chr9 135654505 135654689 + 2 NA Intergenic MER4-int|LTR|ERV1 -8725 NM_001001676 392399 Hs.532679 NM_001001676 ENSG00000148386 LCN9 HEL129 lipocalin 9 protein-coding 495-116 chr2 138106387 138106738 + 2 NA TTS (NR_135526) TTS (NR_135526) 4678 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 334-583 chrX 20807435 20807682 + 2 NA Intergenic Intergenic -540649 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 340-110 chr12 61269306 61269565 + 2 NA Intergenic Intergenic 923404 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 494-152 chr20 42964118 42964434 + 2 NA intron (NM_133170, intron 1 of 31) L1M6|LINE|L1 -4467 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 298-440 chr7 89162082 89162331 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -366469 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 316-150 chr13 26731091 26731264 + 2 NA Intergenic L1PB4|LINE|L1 29609 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 203-140 chr3 15105414 15105586 + 2 NA Intergenic AluJr4|SINE|Alu -6343 NR_126155 64145 Hs.475565 NM_022340 ENSG00000131381 RBSN Rabenosyn-5|ZFYVE20 rabenosyn, RAB effector protein-coding 305-313 chr20 55180478 55180649 + 2 NA Intergenic LTR41|LTR|ERVL -242480 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 345-403 chr5 5526011 5526209 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 103433 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 240-26 chr1 208333740 208333896 + 2 NA Intergenic Intergenic -89434 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 353-415 chr5 98229205 98229502 + 2 NA Intergenic L1PA10|LINE|L1 -68114 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 277-292 chr4 88238389 88238643 + 2 NA Intergenic L1MA2|LINE|L1 -6890 NM_001348985 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 214-69 chr11 101267771 101267948 + 2 NA Intergenic L2a|LINE|L2 -138046 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 381-362 chr7 82465906 82466122 + 2 NA Intergenic MIRb|SINE|MIR -22058 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 190-6 chr1 113535283 113535440 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 144846 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 441-126 chr2 68315171 68315408 + 2 NA intron (NM_015463, intron 2 of 2) L1MC|LINE|L1 4762 NM_015463 25927 Hs.212885 NM_015463 ENSG00000119865 CNRIP1 C2orf32|CRIP1 cannabinoid receptor interacting protein 1 protein-coding 253-300 chr4 94550049 94550200 + 2 NA intron (NM_001011516, intron 3 of 9) intron (NM_001011516, intron 3 of 9) 98182 NM_001256428 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 355-39 chr10 21009060 21009391 + 2 NA intron (NM_001173484, intron 3 of 6) intron (NM_001173484, intron 3 of 6) -111623 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 179-127 chr8 133602406 133602549 + 2 NA Intergenic Intergenic -30590 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 429-222 chr5 5819124 5819522 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 396646 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 353-503 chr7 153272574 153272922 + 2 NA Intergenic MER110|LTR|ERV1 139486 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 169-120 chr7 35326105 35326214 + 2 NA intron (NR_038864, intron 1 of 2) L1M6|LINE|L1 12304 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 369-148 chr16 35355902 35356209 + 2 NA Intergenic L1M4c|LINE|L1 -7361 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 243-141 chr15 64641906 64642128 + 2 NA intron (NM_015042, intron 2 of 8) intron (NM_015042, intron 2 of 8) 61264 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 283-332 chr4 95866662 95866841 + 2 NA Intergenic L1MB8|LINE|L1 26658 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 493-247 chr5 111662481 111662869 + 2 NA intron (NR_040093, intron 1 of 6) intron (NR_040093, intron 1 of 6) 93576 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 328-518 chr6 156239694 156239916 + 2 NA Intergenic Intergenic -138945 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 562-117 chr2 162956221 162956625 + 2 NA Intergenic Intergenic -117656 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 336-304 chr2 192318349 192318630 + 2 NA Intergenic L1ME1|LINE|L1 -123556 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 304-373 chr4 32598311 32598492 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 247363 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 262-197 chr2 33381292 33381539 + 2 NA intron (NM_206943, intron 31 of 33) intron (NM_206943, intron 31 of 33) -37101 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 315-304 chr3 16153310 16153566 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -21242 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 316-560 chr8 116020776 116021029 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 304157 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 800-37 chr3 30710166 30710744 + 2 NA Intergenic Intergenic 103854 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 190-18 chr10 75352619 75352791 + 2 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) -48823 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 399-57 chr11 56081429 56081720 + 2 NA Intergenic Intergenic -11734 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 324-526 chr8 78377967 78378171 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -138271 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 311-449 chr6 144615219 144615474 + 2 NA intron (NM_007124, intron 50 of 73) L2c|LINE|L2 209691 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 322-107 chr11 130749541 130749778 + 2 NA Intergenic L1M4a1|LINE|L1 76703 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 357-52 chr10 125608448 125608680 + 2 NA intron (NM_001318133, intron 3 of 3) MLT1G|LTR|ERVL-MaLR 34193 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 314-223 chr17 48374487 48374740 + 2 NA intron (NM_001075099, intron 2 of 12) intron (NM_001075099, intron 2 of 12) 55601 NM_003726 8631 Hs.316931 NM_003726 ENSG00000141293 SKAP1 HEL-S-81p|SCAP1|SKAP55 src kinase associated phosphoprotein 1 protein-coding 184-4 chr1 36891805 36891973 + 2 NA intron (NM_000831, intron 1 of 15) L1ME3G|LINE|L1 142626 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 247-240 chr21 18768386 18768551 + 2 NA Intergenic Intergenic -8656 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 141-51 chr3 2200335 2200457 + 2 NA intron (NM_175607, intron 2 of 24) MER20|DNA|hAT-Charlie -38433 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 317-466 chr7 120873004 120873192 + 2 NA Intergenic Intergenic -14954 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 509-79 chr15 67699591 67699961 + 2 NA intron (NM_001206804, intron 15 of 21) L1MEd|LINE|L1 -125733 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 173-96 chr3 168080367 168080499 + 2 NA intron (NM_001308155, intron 1 of 14) Charlie5|DNA|hAT-Charlie 15491 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 391-76 chr12 74824996 74825283 + 2 NA Intergenic Intergenic 287304 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 490-101 chr16 6310357 6310783 + 2 NA intron (NM_018723, intron 1 of 15) MIRb|SINE|MIR 290867 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 224-81 chr14 46660605 46660765 + 2 NA Intergenic Intergenic -8904 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 272-480 chr9 103806439 103806592 + 2 NA Intergenic Intergenic -193194 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 229-241 chr22 26248936 26249154 + 2 NA intron (NM_001184776, intron 1 of 14) L1MA5|LINE|L1 79571 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 140-67 chr7 7194336 7194439 + 2 NA intron (NM_020156, intron 1 of 3) L1PB1|LINE|L1 11772 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 474-244 chr5 132166901 132167340 + 2 NA Intergenic L1MB7|LINE|L1 -17756 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 150-84 chr4 128346947 128347094 + 2 NA Intergenic Intergenic -59207 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 665-86 chr7 9827917 9828500 + 2 NA Intergenic Intergenic 193938 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 299-125 chr14 25599171 25599460 + 2 NA Intergenic L1MEg|LINE|L1 -549018 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 384-108 chr14 52259856 52260201 + 2 NA Intergenic Intergenic -7670 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 300-497 chrX 23571557 23571782 + 2 NA Intergenic Intergenic -95824 NM_006406 10549 Hs.83383 NM_006406 ENSG00000123131 PRDX4 AOE37-2|AOE372|HEL-S-97n|PRX-4 peroxiredoxin 4 protein-coding 373-371 chr7 14354086 14354434 + 2 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) -362835 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 302-423 chr7 132338552 132338813 + 2 NA intron (NM_020911, intron 3 of 31) L2a|LINE|L2 77821 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 576-148 chr6 65979729 65980147 + 2 NA Intergenic Intergenic 192059 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 249-2 chr1 31723554 31723740 + 2 NA Intergenic MER33|DNA|hAT-Charlie -19630 NM_001856 1307 Hs.368921 NM_001856 ENSG00000084636 COL16A1 447AA|FP1572 collagen type XVI alpha 1 chain protein-coding 551-203 chr7 144045930 144046329 + 2 NA Intergenic Intergenic -4273 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 400-322 chr7 46987799 46988193 + 2 NA Intergenic L1MC4|LINE|L1 -290874 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 428-32 chr10 121220217 121220547 + 2 NA Intergenic Intergenic 310932 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 397-95 chr14 66960606 66960834 + 2 NA intron (NM_020806, intron 8 of 22) L1MB5|LINE|L1 -228720 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 283-462 chr9 76257752 76257981 + 2 NA intron (NM_001190482, intron 24 of 36) intron (NM_001190482, intron 24 of 36) 136560 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 253-199 chr2 143478728 143478916 + 2 NA intron (NM_018460, intron 8 of 13) intron (NM_018460, intron 8 of 13) 349403 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 527-16 chr1 238084799 238085218 + 2 NA Intergenic AluY|SINE|Alu -194086 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 415-251 chr7 31416352 31416684 + 2 NA Intergenic Intergenic -75792 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 352-493 chr7 45521193 45521386 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -52851 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 186-25 chr11 106546089 106546240 + 2 NA Intergenic L1ME1|LINE|L1 294757 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 403-160 chr2 103088448 103088669 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -104129 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 471-182 chr4 14739661 14740057 + 2 NA intron (NR_126435, intron 2 of 6) L2b|LINE|L2 148310 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 210-135 chr2 114079819 114079993 + 2 NA Intergenic Intergenic -99922 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 258-275 chr3 181424857 181425088 + 2 NA intron (NR_125407, intron 3 of 4) intron (NR_125407, intron 3 of 4) 17514 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 294-21 chr1 203605688 203605878 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -21004 NM_001001396 493 Hs.343522 NM_001684 ENSG00000058668 ATP2B4 ATP2B2|MXRA1|PMCA4|PMCA4b|PMCA4x ATPase plasma membrane Ca2+ transporting 4 protein-coding 262-391 chr7 23195782 23195976 + 2 NA exon (NM_007342, exon 4 of 7) exon (NM_007342, exon 4 of 7) 13831 NM_001370443 11097 Hs.408241 NM_007342 ENSG00000136243 NUP42 CG1|NLP-1|NLP_1|NUPL2|hCG1 nucleoporin 42 protein-coding 275-383 chr9 79571810 79571960 + 2 NA non-coding (NR_104239, exon 1 of 21) non-coding (NR_104239, exon 1 of 21) 112 NM_001351552 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 341-95 chr11 110744100 110744404 + 2 NA Intergenic L2c|LINE|L2 -31063 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 485-87 chr15 26914471 26914912 + 2 NA intron (NM_001165037, intron 6 of 10) intron (NM_001165037, intron 6 of 10) 47565 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 434-272 chr7 145915313 145915672 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -858779 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 585-175 chr9 119655518 119655926 + 2 NA Intergenic Intergenic -279338 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 492-148 chr20 15783512 15783880 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 139618 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 207-129 chr2 39479417 39479570 + 2 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 42077 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 253-265 chr3 90596531 90596755 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1489022 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 468-105 chr16 82353397 82353828 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -183388 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 525-278 chr9 37590916 37591281 + 2 NA intron (NM_001001790, intron 1 of 1) intron (NM_001001790, intron 1 of 1) 1499 NM_001001790 401505 Hs.130774 NM_001001790 ENSG00000175768 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 protein-coding 342-205 chr18 52617928 52618120 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 277827 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 198-204 chr5 163030348 163030495 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -407150 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 201-21 chr1 248733406 248733574 + 2 NA Intergenic Intergenic 22269 NM_001085474 646627 Hs.146268 NM_001085474 ENSG00000259823 LYPD8 - LY6/PLAUR domain containing 8 protein-coding 326-163 chr15 38720668 38720894 + 2 NA Intergenic Intergenic 24183 NR_160786 637-94 chr5 46082191 46082585 + 2 NA Intergenic ALR/Alpha|Satellite|centr -386008 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 245-258 chr4 97492527 97492746 + 2 NA Intergenic MER67C|LTR|ERV1 125710 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 188-101 chr2 104938113 104938260 + 2 NA intron (NR_110603, intron 2 of 2) intron (NR_110603, intron 2 of 2) -65591 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 208-166 chr3 67550118 67550267 + 2 NA intron (NM_001177599, intron 2 of 10) intron (NM_001177599, intron 2 of 10) 104422 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 398-120 chr15 71640981 71641313 + 2 NA intron (NM_001286429, intron 1 of 11) MIRb|SINE|MIR 50392 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 378-85 chr11 76906015 76906375 + 2 NA intron (NM_001300953, intron 1 of 9) LTR8B|LTR|ERV1 45277 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 396-11 chr1 86263419 86263653 + 2 NA Intergenic Intergenic 94151 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 1039-7 chr14 82381236 82381900 + 2 NA Intergenic L1MB8|LINE|L1 -261064 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 268-167 chr18 72089850 72090034 + 2 NA Intergenic L1MDa|LINE|L1 -307716 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 322-187 chr16 51445367 51445588 + 2 NA Intergenic Intergenic -294205 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 408-345 chr8 129020087 129020447 + 2 NA Intergenic Intergenic -54266 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 439-108 chr17 67511377 67511776 + 2 NA intron (NM_181671, intron 1 of 9) AluSx1|SINE|Alu -39991 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 324-415 chr5 8532172 8532359 + 2 NA Intergenic Intergenic 71340 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 349-237 chr2 3878741 3878936 + 2 NA Intergenic Intergenic 95194 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 221-73 chr13 76265237 76265383 + 2 NA Intergenic Intergenic -330178 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 530-19 chr1 221576869 221577292 + 2 NA Intergenic L1MEc|LINE|L1 159820 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 176-18 chr11 103556705 103556834 + 2 NA Intergenic Intergenic -293137 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 280-26 chr1 187438729 187438892 + 2 NA Intergenic L1ME1|LINE|L1 -4818 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 304-429 chr5 116797318 116797491 + 2 NA Intergenic L1MC2|LINE|L1 -35195 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 281-460 chr9 90655352 90655563 + 2 NA Intergenic L1MB3|LINE|L1 -12633 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 485-208 chr4 89120533 89120958 + 2 NA Intergenic MER49|LTR|ERV1 7928 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 313-551 chr9 6233816 6234110 + 2 NA intron (NM_001199640, intron 1 of 6) intron (NM_001199640, intron 1 of 6) -3118 NM_001314045 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 555-19 chr10 64692251 64692679 + 2 NA Intergenic Intergenic -133063 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 328-500 chr6 52975061 52975332 + 2 NA Intergenic Intergenic 20088 NM_001512 2941 Hs.485557 NM_001512 ENSG00000170899 GSTA4 GSTA4-4|GTA4 glutathione S-transferase alpha 4 protein-coding 328-179 chr15 69519206 69519503 + 2 NA Intergenic L1MB4|LINE|L1 -42366 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 237-15 chr1 114483725 114483911 + 2 NA intron (NM_015906, intron 1 of 19) L1M4a1|LINE|L1 27385 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 178-62 chr2 32665294 32665441 + 2 NA intron (NM_017735, intron 6 of 19) intron (NM_017735, intron 6 of 19) 30112 NR_039922 100616219 NR_039922 ENSG00000265057 MIR4765 - microRNA 4765 ncRNA 324-191 chr15 95721905 95722170 + 2 NA Intergenic L1M4a2|LINE|L1 288944 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 339-176 chr15 61614366 61614551 + 2 NA Intergenic L1MB1|LINE|L1 -115460 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 370-26 chr1 218026351 218026601 + 2 NA Intergenic MER41C|LTR|ERV1 -17029 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 549-105 chr2 48636939 48637330 + 2 NA intron (NM_001198594, intron 4 of 7) intron (NM_001198594, intron 4 of 7) 19278 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 274-321 chr5 137113708 137113891 + 2 NA intron (NM_004598, intron 4 of 10) intron (NM_004598, intron 4 of 10) -14398 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 679-28 chr13 57408784 57409246 + 2 NA Intergenic Intergenic -222729 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 283-78 chr11 38810721 38810931 + 2 NA Intergenic MER20|DNA|hAT-Charlie 161968 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 240-267 chr21 32319606 32319783 + 2 NA intron (NM_014825, intron 35 of 38) intron (NM_014825, intron 35 of 38) 27881 NM_206898 56246 Hs.584940 NM_178817 ENSG00000170262 MRAP B27|C21orf61|FALP|FGD2|GCCD2 melanocortin 2 receptor accessory protein protein-coding 417-84 chr14 59504622 59504873 + 2 NA TTS (NM_001164399) TTS (NM_001164399) 20230 NM_016475 51528 Hs.446850 NM_016475 ENSG00000050130 JKAMP C14orf100|C24orf100|CDA06|HSPC213|HSPC327|JAMP JNK1/MAPK8 associated membrane protein protein-coding 207-246 chr5 123261605 123261739 + 2 NA Intergenic Intergenic 161920 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 201-235 chr8 48758566 48758715 + 2 NA Intergenic Intergenic -23329 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 240-247 chr2 187214723 187214946 + 2 NA Intergenic Intergenic 233418 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 288-157 chr18 11492202 11492461 + 2 NA intron (NR_110778, intron 1 of 2) intron (NR_110778, intron 1 of 2) 2283 NR_110778 101927433 Hs.331210 NR_110778 ENSG00000267252 LINC01255 - long intergenic non-protein coding RNA 1255 ncRNA 156-75 chr4 102084623 102084712 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 239645 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 430-34 chr10 73362039 73362364 + 2 NA Intergenic L1MA6|LINE|L1 -3337 NM_001367801 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 254-381 chr7 49713854 49714043 + 2 NA Intergenic Intergenic -59690 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 354-152 chr15 58674262 58674548 + 2 NA intron (NM_001320570, intron 4 of 14) intron (NM_001320570, intron 4 of 14) 19202 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 175-76 chr2 66460948 66461103 + 2 NA intron (NM_002398, intron 6 of 12) intron (NM_002398, intron 6 of 12) -20695 NR_046625 100873998 Hs.734698 NR_046625 ENSG00000230749 MEIS1-AS2 MEIS1-AS1 MEIS1 antisense RNA 2 ncRNA 634-134 chr6 70987568 70988170 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger -30809 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 702-19 chr13 22821164 22821716 + 2 NA Intergenic AluSx|SINE|Alu 76741 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 492-265 chr8 113421533 113421935 + 2 NA intron (NM_001363185, intron 1 of 66) LTR48|LTR|ERV1 15205 NM_001363185 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 325-167 chr14 56405423 56405690 + 2 NA Intergenic L1PA15|LINE|L1 -108775 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 185-100 chr2 103941412 103941545 + 2 NA Intergenic L1MDa|LINE|L1 466854 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 233-330 chr6 42595754 42595939 + 2 NA intron (NM_015255, intron 4 of 46) intron (NM_015255, intron 4 of 46) 31817 NM_001184801 23304 Hs.529925 NM_015255 ENSG00000024048 UBR2 C6orf133|bA49A4.1|dJ242G1.1|dJ392M17.3 ubiquitin protein ligase E3 component n-recognin 2 protein-coding 360-295 chr3 19847002 19847267 + 2 NA Intergenic L1MA5A|LINE|L1 87083 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 391-262 chr4 96246866 96247107 + 2 NA Intergenic Intergenic -63717 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 345-227 chr18 69597788 69598081 + 2 NA intron (NM_152721, intron 2 of 7) L1M4b|LINE|L1 128003 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 315-283 chr20 63144886 63145063 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -33526 NR_029670 406909 NR_029670 ENSG00000207598 MIR124-3 MIRN124-3|MIRN124A3|mir-124-3 microRNA 124-3 ncRNA 296-434 chr7 35692559 35692850 + 2 NA intron (NM_022373, intron 2 of 8) intron (NM_022373, intron 2 of 8) 2431 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 173-50 chr16 72765674 72765813 + 2 NA Intergenic Intergenic -100773 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 618-65 chr2 143765241 143765851 + 2 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -171521 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 345-241 chr2 19257890 19258110 + 2 NA Intergenic L1PB2|LINE|L1 -90429 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 363-450 chr8 115300517 115300776 + 2 NA Intergenic Intergenic 367367 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 299-253 chr20 15727269 15727536 + 2 NA intron (NM_001351663, intron 8 of 17) L1PA15|LINE|L1 195912 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 387-259 chr4 130704376 130704737 + 2 NA Intergenic HERVL40-int|LTR|ERVL 328195 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 141-36 chr2 8819201 8819304 + 2 NA intron (NM_001348732, intron 2 of 28) intron (NM_001348732, intron 2 of 28) 18361 NM_020738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 331-218 chr18 12914523 12914688 + 2 NA Intergenic AluJb|SINE|Alu -30270 NM_080423 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 543-105 chr18 60286643 60287133 + 2 NA Intergenic LTR78|LTR|ERV1 85887 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 392-119 chr18 23746351 23746628 + 2 NA intron (NM_001127717, intron 2 of 73) Charlie1a|DNA|hAT-Charlie 57036 NM_001127717 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 326-121 chr12 17243681 17243907 + 2 NA Intergenic L2|LINE|L2 255047 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 388-374 chr9 108130497 108130858 + 2 NA Intergenic L1MEd|LINE|L1 -640908 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 606-84 chr2 83201166 83201624 + 2 NA Intergenic Intergenic -321419 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 214-288 chr6 146634690 146634884 + 2 NA intron (NM_024694, intron 1 of 35) L1M5|LINE|L1 35815 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 304-539 chr8 131728819 131728991 + 2 NA Intergenic LTR40a|LTR|ERVL -175188 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 300-320 chr4 57913624 57913788 + 2 NA Intergenic Intergenic 487834 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 271-172 chr18 4395675 4395863 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 59497 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 260-432 chr8 77750733 77750967 + 2 NA Intergenic L1PA14|LINE|L1 300153 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 329-18 chr1 115527184 115527430 + 2 NA Intergenic Intergenic -114663 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 188-87 chr2 6092465 6092633 + 2 NA Intergenic Intergenic 110571 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 170-108 chr4 123548860 123549015 + 2 NA Intergenic Intergenic -101054 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 371-178 chr2 107521284 107521589 + 2 NA Intergenic L1ME1|LINE|L1 -7983 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 310-386 chr4 184008660 184008841 + 2 NA intron (NR_132761, intron 2 of 2) intron (NR_132761, intron 2 of 2) 103443 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 503-75 chr12 91391920 91392245 + 2 NA Intergenic L1MA3|LINE|L1 -209265 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 286-70 chr11 60679706 60679874 + 2 NA intron (NR_026946, intron 6 of 6) intron (NR_026946, intron 6 of 6) -19822 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 227-23 chr1 223374820 223375026 + 2 NA Intergenic L2c|LINE|L2 -10747 NM_017982 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 343-348 chr3 103855419 103855632 + 2 NA Intergenic Intergenic -331409 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 377-37 chr10 23577693 23577982 + 2 NA Intergenic MamRep605|LTR?|LTR? -116890 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 375-363 chr6 152583203 152583406 + 2 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 53547 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 312-350 chr3 172018205 172018406 + 2 NA Intergenic MER50-int|LTR|ERV1 -21273 NM_022763 64778 Hs.744888 NM_022763 ENSG00000075420 FNDC3B FAD104|PRO4979|YVTM2421 fibronectin type III domain containing 3B protein-coding 244-318 chr6 47968676 47968867 + 2 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 99918 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 249-416 chr8 82598083 82598300 + 2 NA Intergenic L1M5|LINE|L1 -313913 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 350-89 chr12 22836488 22836709 + 2 NA Intergenic MLT2C1|LTR|ERVL 211427 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 359-458 chr7 102959463 102959683 + 2 NA intron (NR_105043, intron 9 of 20) intron (NR_105043, intron 9 of 20) -13857 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 375-332 chr5 115235965 115236286 + 2 NA intron (NM_005023, intron 5 of 8) MamRep605|LTR?|LTR? 26752 NM_005023 5229 Hs.254006 NM_005023 ENSG00000164219 PGGT1B BGGI|GGTI protein geranylgeranyltransferase type I subunit beta protein-coding 215-338 chr9 73250775 73250914 + 2 NA Intergenic L1ME3|LINE|L1 98979 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 346-151 chr15 26889088 26889424 + 2 NA intron (NM_001165037, intron 6 of 10) MIRb|SINE|MIR 22130 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 139-78 chr6 55779436 55779533 + 2 NA intron (NM_001329754, intron 3 of 5) intron (NM_001329754, intron 3 of 5) 96106 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 256-302 chr5 1541201 1541410 + 2 NA Intergenic Intergenic -17345 NM_024830 79888 Hs.368853 NM_024830 ENSG00000153395 LPCAT1 AGPAT10|AGPAT9|AYTL2|LPCAT-1|PFAAP3|lpcat|lysoPAFAT lysophosphatidylcholine acyltransferase 1 protein-coding 257-375 chr7 16911027 16911250 + 2 NA Intergenic L1M1|LINE|L1 -29155 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 361-387 chr6 55571213 55571509 + 2 NA intron (NM_001287746, intron 1 of 9) L1MEi|LINE|L1 7853 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 273-110 chr12 108092713 108092912 + 2 NA Intergenic Intergenic -36476 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 359-393 chr5 64965575 64965830 + 2 NA intron (NM_005869, intron 11 of 13) intron (NM_005869, intron 11 of 13) 196772 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 352-560 chr9 30317383 30317575 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 90975 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 425-280 chr7 34199245 34199539 + 2 NA Intergenic Intergenic 293853 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 357-491 chrX 58343626 58343847 + 2 NA Intergenic ALR/Alpha|Satellite|centr -433103 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 286-60 chr11 776646 776871 + 2 NA promoter-TSS (NR_126342) promoter-TSS (NR_126342) 729 NM_182612 347862 Hs.218362 NM_182612 ENSG00000177225 GATD1 PDDC1 glutamine amidotransferase like class 1 domain containing 1 protein-coding 337-109 chr12 18632852 18633058 + 2 NA intron (NM_001288774, intron 31 of 32) MLT2B1|LTR|ERVL 104554 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 334-234 chr19 30110471 30110772 + 2 NA Intergenic Intergenic 168382 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 323-574 chr9 24403025 24403231 + 2 NA Intergenic L1PA16|LINE|L1 142548 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 365-213 chr2 176131644 176131928 + 2 NA 3' UTR (NM_001199746, exon 2 of 2) 3' UTR (NM_001199746, exon 2 of 2) 2081 NM_001199747 3234 Hs.301963 NM_019558 ENSG00000175879 HOXD8 HOX4|HOX4E|HOX5.4 homeobox D8 protein-coding 377-42 chr10 49051112 49051330 + 2 NA intron (NM_001031746, intron 5 of 7) L1MC1|LINE|L1 64301 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 250-400 chr7 53916483 53916674 + 2 NA Intergenic Intergenic -104647 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 309-179 chr15 84989150 84989344 + 2 NA intron (NM_173454, intron 1 of 20) intron (NM_173454, intron 1 of 20) 7273 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 476-249 chr7 3567254 3567689 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 266219 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 516-24 chr10 67749003 67749465 + 2 NA Intergenic L1PA10|LINE|L1 -53039 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 295-116 chr13 55044608 55044889 + 2 NA Intergenic Intergenic -129706 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 269-223 chr20 40142916 40143115 + 2 NA Intergenic MIR|SINE|MIR 138554 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 124-19 chr12 29052348 29052425 + 2 NA Intergenic L1MA7|LINE|L1 -96892 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 209-340 chr8 138702434 138702621 + 2 NA intron (NM_152888, intron 31 of 64) intron (NM_152888, intron 31 of 64) -204797 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 410-88 chr14 72308256 72308598 + 2 NA intron (NM_001370288, intron 2 of 16) L2c|LINE|L2 -208393 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 514-101 chr15 80909682 80910085 + 2 NA intron (NM_001293304, intron 14 of 29) intron (NM_001293304, intron 14 of 29) -67810 NR_030393 693132 NR_030393 ENSG00000208003 MIR549A MIR549|MIRN549|hsa-mir-549|hsa-mir-549a|mir-549a microRNA 549a ncRNA 534-211 chr6 10864482 10864826 + 2 NA Intergenic AluJb|SINE|Alu 17211 NM_004752 9247 Hs.227098 NM_004752 ENSG00000124827 GCM2 GCMB|HRPT4|hGCMb glial cells missing transcription factor 2 protein-coding 243-338 chr4 128231221 128231428 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 56489 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 643-14 chr10 105116190 105116809 + 2 NA intron (NM_014978, intron 7 of 26) L1PA15|LINE|L1 -450283 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 223-366 chr9 84659814 84659990 + 2 NA Intergenic Intergenic -8556 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 639-115 chr8 89069600 89069983 + 2 NA Intergenic L1PA16|LINE|L1 687920 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 332-441 chr5 164164694 164164943 + 2 NA Intergenic Intergenic 302584 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 363-60 chr10 99111358 99111586 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) 124403 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 455-273 chr8 79207950 79208302 + 2 NA Intergenic L1MC3|LINE|L1 -124062 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 531-173 chr4 42704550 42704930 + 2 NA Intergenic Intergenic -47635 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 363-353 chr5 26261949 26262236 + 2 NA Intergenic L1PA16|LINE|L1 776494 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 386-82 chr13 26578457 26578767 + 2 NA intron (NM_006646, intron 1 of 9) MER73|LTR|ERVL 20909 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 557-126 chr3 127531 127951 + 2 NA Intergenic L2c|LINE|L2 -68855 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 330-162 chr14 72729658 72729856 + 2 NA intron (NM_001280544, intron 4 of 9) L1MC1|LINE|L1 162892 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 205-234 chr5 178967303 178967480 + 2 NA TTS (NM_182594) TTS (NM_182594) 26193 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 273-214 chr2 51440121 51440275 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 407597 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 329-385 chr3 145421993 145422209 + 2 NA Intergenic Intergenic 647084 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 290-427 chr7 68881237 68881447 + 2 NA Intergenic L1ME3A|LINE|L1 716282 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 316-233 chr19 262152 262462 + 2 NA Intergenic MER34C_|LTR|ERV1 28832 NM_177543 8612 Hs.465506 NM_003712 ENSG00000141934 PLPP2 LPP2|PAP-2c|PAP2-g|PPAP2C phospholipid phosphatase 2 protein-coding 224-321 chr8 74116247 74116434 + 2 NA Intergenic Intergenic 124948 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 224-361 chrX 143171344 143171516 + 2 NA Intergenic L2a|LINE|L2 145502 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 268-308 chr5 45342000 45342220 + 2 NA intron (NM_021072, intron 5 of 7) HSMAR2|DNA|TcMar-Mariner 354270 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 286-332 chr4 187708948 187709161 + 2 NA Intergenic L1MA4|LINE|L1 -36413 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 818-17 chr12 59966055 59966583 + 2 NA Intergenic Intergenic 276949 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 670-123 chr8 113248808 113249466 + 2 NA intron (NM_001363185, intron 3 of 66) THE1B|LTR|ERVL-MaLR 128015 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 384-284 chr5 17310437 17310656 + 2 NA Intergenic Intergenic 76764 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 488-250 chr6 162233506 162233848 + 2 NA intron (NM_004562, intron 3 of 11) MSTD|LTR|ERVL-MaLR -493455 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 261-133 chr16 78889300 78889507 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 711334 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 300-491 chr9 91822167 91822401 + 2 NA intron (NM_001318204, intron 1 of 7) L1MC5a|LINE|L1 127944 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 596-60 chr14 45061659 45062197 + 2 NA intron (NR_131765, intron 16 of 19) L1MEc|LINE|L1 -22188 NM_017922 55015 Hs.274337 NM_017922 ENSG00000185246 PRPF39 - pre-mRNA processing factor 39 protein-coding 441-201 chr5 45068150 45068440 + 2 NA Intergenic Intergenic 259348 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 444-9 chr1 91817206 91817641 + 2 NA intron (NR_036634, intron 2 of 17) intron (NR_036634, intron 2 of 17) 68728 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 519-22 chr10 29677579 29677937 + 2 NA intron (NM_001323599, intron 2 of 38) intron (NM_001323599, intron 2 of 38) -42787 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 401-341 chr9 24782603 24782896 + 2 NA Intergenic Intergenic -236852 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 393-324 chr7 37983873 37984107 + 2 NA Intergenic Intergenic 62671 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 217-266 chr4 92671604 92671766 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 367286 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 271-38 chr10 11098540 11098756 + 2 NA intron (NR_046108, intron 1 of 6) intron (NR_046108, intron 1 of 6) 6840 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 125-57 chr6 5676239 5676327 + 2 NA intron (NR_110842, intron 2 of 3) intron (NR_110842, intron 2 of 3) 18989 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 202-135 chr2 225073226 225073377 + 2 NA Intergenic Intergenic -30833 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 117-25 chr21 26381047 26381111 + 2 NA Intergenic Intergenic -12556 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 191-17 chr1 199064782 199064930 + 2 NA intron (NR_126351, intron 2 of 2) MER20B|DNA|hAT-Charlie -45892 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 590-162 chr8 4144264 4144721 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 850422 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 398-257 chr5 7168934 7169183 + 2 NA Intergenic Intergenic 100296 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 828-24 chr2 67976635 67977206 + 2 NA Intergenic Intergenic 86084 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 259-226 chr2 239827024 239827247 + 2 NA Intergenic L2a|LINE|L2 64275 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 356-325 chr3 70800134 70800463 + 2 NA Intergenic L2a|LINE|L2 264626 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 329-74 chr10 94978333 94978566 + 2 NA intron (NM_000771, intron 6 of 8) L1MA1|LINE|L1 39791 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 260-431 chr8 72503072 72503314 + 2 NA Intergenic Intergenic -34032 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 344-142 chr14 72629970 72630264 + 2 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 113297 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 322-206 chr17 68804357 68804546 + 2 NA Intergenic Intergenic 150941 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 361-196 chr19 37547411 37547646 + 2 NA Intergenic AluJb|SINE|Alu -1421 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 297-285 chr3 12851600 12851849 + 2 NA Intergenic L1MD1|LINE|L1 -10142 NM_001007073 6161 Hs.265174 NM_000994 ENSG00000144713 RPL32 L32|PP9932 ribosomal protein L32 protein-coding 280-41 chr10 10079830 10080105 + 2 NA Intergenic Intergenic 21245 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 255-114 chr14 74600986 74601189 + 2 NA intron (NM_000428, intron 2 of 35) MER5B|DNA|hAT-Charlie 11150 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 299-297 chr3 141817306 141817479 + 2 NA TTS (NM_139209) TTS (NM_139209) 39191 NM_139209 131890 Hs.680654 NM_139209 ENSG00000114124 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 311-233 chr2 4326386 4326585 + 2 NA Intergenic Intergenic 329737 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 402-265 chr5 31729497 31729698 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 90466 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 407-140 chr2 60346772 60347096 + 2 NA Intergenic L1ME2|LINE|L1 36102 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 496-208 chr5 19941227 19941571 + 2 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 46801 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 245-302 chr6 62797414 62797601 + 2 NA Intergenic L1PB1|LINE|L1 -511280 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 449-288 chr8 131248486 131248856 + 2 NA Intergenic Intergenic -207762 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 317-22 chr1 118851459 118851730 + 2 NA Intergenic Intergenic 136749 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 344-401 chr5 144550595 144550931 + 2 NA Intergenic L1MA5|LINE|L1 345372 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 472-8 chr1 72751542 72751946 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -469205 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 365-256 chr3 48736303 48736618 + 2 NA Intergenic AluSx3|SINE|Alu -19182 NM_001005909 51447 Hs.595983 NM_016291 ENSG00000068745 IP6K2 IHPK2|InsP6K2|PIUS inositol hexakisphosphate kinase 2 protein-coding 657-101 chr8 134115957 134116453 + 2 NA Intergenic Intergenic 229709 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 266-155 chr18 7405758 7406013 + 2 NA Intergenic AluSq|SINE|Alu 55121 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 307-492 chr8 129643714 129643961 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 36402 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 269-346 chr6 66548054 66548270 + 2 NA Intergenic Intergenic 760283 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 823-2 chr1 34436558 34437049 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy 232891 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 384-4 chr1 60502217 60502444 + 2 NA Intergenic L1MA6|LINE|L1 120355 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 296-182 chr17 48322527 48322675 + 2 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 28254 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 243-352 chr5 30433696 30433876 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 553226 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 298-337 chr4 111475031 111475301 + 2 NA Intergenic Intergenic -614519 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 363-284 chr3 60827798 60828132 + 2 NA intron (NM_001320900, intron 4 of 9) MIRb|SINE|MIR -210095 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 641-47 chr17 59463352 59463897 + 2 NA intron (NR_110813, intron 2 of 2) AluSx1|SINE|Alu 63233 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 302-291 chr3 96928135 96928394 + 2 NA intron (NM_001080448, intron 2 of 17) L1PA11|LINE|L1 113670 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 327-86 chr11 55545628 55545799 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -8556 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 209-131 chr18 5741582 5741747 + 2 NA Intergenic Intergenic -7155 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 339-213 chr17 54761033 54761274 + 2 NA Intergenic Intergenic -139538 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 154-38 chr17 54273326 54273474 + 2 NA Intergenic Intergenic 450473 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 308-20 chr1 94850024 94850217 + 2 NA intron (NM_001258340, intron 9 of 14) intron (NM_001258340, intron 9 of 14) 25627 NM_001350223 126969 Hs.483423 NM_152369 ENSG00000143036 SLC44A3 CTL3 solute carrier family 44 member 3 protein-coding 205-279 chr8 107163049 107163188 + 2 NA Intergenic Intergenic 173397 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 479-6 chr1 79963199 79963569 + 2 NA Intergenic L2c|LINE|L2 -572371 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 257-77 chr11 115475004 115475225 + 2 NA intron (NM_001098517, intron 1 of 8) MER2|DNA|TcMar-Tigger 29301 NM_001098517 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 273-384 chr6 39028546 39028735 + 2 NA intron (NM_001371, intron 91 of 91) MLT1C|LTR|ERVL-MaLR -20141 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 341-234 chr2 23338160 23338356 + 2 NA Intergenic L1MA7|LINE|L1 -46921 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 340-25 chr1 168686458 168686710 + 2 NA Intergenic L2c|LINE|L2 42622 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 680-83 chr3 86998440 86998969 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -7555 NM_001320493 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 620-29 chr12 131811983 131812449 + 2 NA Intergenic L1MC3|LINE|L1 -16177 NM_016155 4326 Hs.709245 NM_016155 ENSG00000198598 MMP17 MMP-17|MT4-MMP|MT4MMP|MTMMP4 matrix metallopeptidase 17 protein-coding 480-26 chr10 35725641 35726027 + 2 NA Intergenic Intergenic -52468 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 142-16 chr12 65541649 65541765 + 2 NA intron (NR_120433, intron 3 of 4) intron (NR_120433, intron 3 of 4) 15604 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 517-213 chr5 41396113 41396521 + 2 NA intron (NM_001005473, intron 1 of 2) MSTA|LTR|ERVL-MaLR 114284 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 343-202 chr18 5344567 5344864 + 2 NA Intergenic L1M5|LINE|L1 -47662 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 242-202 chr2 166466387 166466621 + 2 NA intron (NR_045628, intron 6 of 25) intron (NR_045628, intron 6 of 25) 20467 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 338-487 chr7 15980096 15980361 + 2 NA Intergenic MLT2C2|LTR|ERVL -230258 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 242-89 chr13 34442721 34442937 + 2 NA intron (NR_047036, intron 2 of 2) BLACKJACK|DNA|hAT-Blackjack 94786 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 387-392 chr9 79071039 79071362 + 2 NA Intergenic Intergenic 74466 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 342-542 chr8 140083450 140083702 + 2 NA intron (NM_001160372, intron 17 of 22) MIRb|SINE|MIR 16959 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 241-152 chr18 3577637 3577815 + 2 NA intron (NM_001242762, intron 5 of 9) intron (NM_001242762, intron 5 of 9) -16388 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 327-227 chr19 52063678 52063966 + 2 NA TTS (NM_001352298) TTS (NM_001352298) -14984 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 218-307 chr7 86361182 86361327 + 2 NA Intergenic L1MC3|LINE|L1 -282655 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 376-399 chr8 68753300 68753545 + 2 NA intron (NM_001349479, intron 9 of 11) intron (NM_001349479, intron 9 of 11) 350768 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 523-140 chr2 137233480 137233826 + 2 NA intron (NM_001316349, intron 9 of 27) intron (NM_001316349, intron 9 of 27) 468108 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 253-340 chr5 113674469 113674674 + 2 NA Intergenic Intergenic 160877 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 253-74 chr11 55101088 55101305 + 2 NA Intergenic ALR/Alpha|Satellite|centr -160959 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 171-28 chr13 60965834 60965969 + 2 NA Intergenic MER110|LTR|ERV1 233979 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 259-263 chr3 164438163 164438367 + 2 NA Intergenic L1MD|LINE|L1 -266709 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 218-317 chr8 59800747 59800923 + 2 NA Intergenic Intergenic 480565 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 271-75 chr11 91763390 91763573 + 2 NA Intergenic Intergenic -461553 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 396-142 chr19 13500241 13500631 + 2 NA intron (NM_023035, intron 1 of 46) intron (NM_023035, intron 1 of 46) 6024 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 501-2 chr1 59498740 59499073 + 2 NA intron (NM_001350794, intron 6 of 14) intron (NM_001350794, intron 6 of 14) -16724 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 400-155 chr2 38000463 38000772 + 2 NA intron (NM_001170793, intron 7 of 9) L1ME2|LINE|L1 35724 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 364-128 chr14 64901511 64901818 + 2 NA Intergenic Intergenic -12697 NM_145165 91612 Hs.731537 NM_145165 ENSG00000258289 CHURC1 C14orf52|My015|chch churchill domain containing 1 protein-coding 354-494 chr9 74458272 74458562 + 2 NA Intergenic L1MC5a|LINE|L1 -38918 NM_006914 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 296-411 chr6 106419358 106419640 + 2 NA intron (NM_001371242, intron 1 of 21) AluJb|SINE|Alu 37749 NR_134603 105377924 Hs.741855 NR_134603 ENSG00000282408 LOC105377924 - uncharacterized LOC105377924 ncRNA 526-159 chr22 33975647 33976083 + 2 NA Intergenic Intergenic -52977 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 382-174 chr2 21160240 21160461 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 36364 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 325-252 chr19 53738516 53738780 + 2 NA promoter-TSS (NR_030213) promoter-TSS (NR_030213) -685 NR_030213 574491 NR_030213 ENSG00000207699 MIR518A2 MIRN518A-2|MIRN518A2|mir-518a-2 microRNA 518a-2 ncRNA 275-68 chr11 83593637 83593793 + 2 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 88710 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 322-570 chr9 105106700 105107015 + 2 NA Intergenic AluSx|SINE|Alu -137748 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 200-139 chr2 124335595 124335770 + 2 NA intron (NM_130773, intron 3 of 23) LTR49-int|LTR|ERV1 310395 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 278-274 chr3 69498162 69498397 + 2 NA Intergenic Intergenic -112191 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 514-169 chr20 18771848 18772226 + 2 NA Intergenic L1MA3|LINE|L1 21945 NR_026884 29075 Hs.584899 NM_014162 LINC00652 HSPC072 long intergenic non-protein coding RNA 652 ncRNA 304-483 chr7 21701870 21702134 + 2 NA intron (NM_001277115, intron 36 of 81) intron (NM_001277115, intron 36 of 81) 158963 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 516-208 chr5 63480294 63480683 + 2 NA Intergenic L1M4|LINE|L1 481804 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 376-423 chr9 31960273 31960612 + 2 NA Intergenic L1PA11|LINE|L1 -424161 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 246-194 chr2 86694112 86694292 + 2 NA intron (NM_001198954, intron 1 of 7) L1ME1|LINE|L1 -26089 NM_022780 64795 Hs.75277 NM_022780 ENSG00000153561 RMND5A CTLH|GID2|GID2A|RMD5|p44CTLH required for meiotic nuclear division 5 homolog A protein-coding 381-104 chr14 46103245 46103606 + 2 NA intron (NR_102702, intron 1 of 3) intron (NR_102702, intron 1 of 3) 39266 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 848-14 chr15 88963141 88963644 + 2 NA Intergenic L1MA5A|LINE|L1 -50013 NM_001114614 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 293-30 chr10 8945252 8945433 + 2 NA Intergenic L1P4|LINE|L1 47353 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 328-344 chr3 43141090 43141375 + 2 NA Intergenic L1MDb|LINE|L1 -35153 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 150-27 chr12 19163692 19163798 + 2 NA intron (NM_019012, intron 3 of 25) intron (NM_019012, intron 3 of 25) 34012 NM_001256470 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 262-445 chr8 141468654 141468855 + 2 NA intron (NR_102364, intron 16 of 26) intron (NR_102364, intron 16 of 26) 38475 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 314-20 chr1 96335776 96336047 + 2 NA intron (NR_110693, intron 3 of 5) intron (NR_110693, intron 3 of 5) 38214 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 356-67 chr10 109909335 109909633 + 2 NA intron (NM_001324132, intron 1 of 19) intron (NM_001324132, intron 1 of 19) 13762 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 537-129 chr2 145740408 145740907 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -846400 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 241-84 chr12 45513525 45513711 + 2 NA Intergenic MLT2D|LTR|ERVL 214303 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 306-68 chr10 127647789 127648068 + 2 NA Intergenic L1MC5|LINE|L1 -89257 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 316-511 chr7 34038012 34038192 + 2 NA intron (NM_133468, intron 7 of 15) MLT1D|LTR|ERVL-MaLR 132563 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 382-120 chr15 49723685 49724026 + 2 NA Intergenic Intergenic 102807 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 331-59 chr10 79592681 79592871 + 2 NA Intergenic (TAACAA)n|Simple_repeat|Simple_repeat -18163 NM_001164647 653509 Hs.535295 NM_005411 ENSG00000122852 SFTPA1 COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 surfactant protein A1 protein-coding 280-13 chr1 79385534 79385804 + 2 NA Intergenic L2a|LINE|L2 -378939 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 367-351 chr5 36569598 36569814 + 2 NA Intergenic Intergenic -36649 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 461-276 chr8 124134720 124135033 + 2 NA intron (NR_103547, intron 1 of 4) L1PA15|LINE|L1 36646 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 488-215 chr5 85621564 85621968 + 2 NA Intergenic Intergenic -660678 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 165-61 chr2 211681841 211681960 + 2 NA intron (NM_001042599, intron 12 of 26) L1ME1|LINE|L1 744460 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 162-34 chr14 60857002 60857133 + 2 NA intron (NM_002431, intron 6 of 7) Tigger1|DNA|TcMar-Tigger 122306 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 512-237 chr6 61780263 61780631 + 2 NA intron (NR_146874, intron 6 of 13) AluJb|SINE|Alu 206317 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 212 chr1 13972987 13973140 + 2 NA Intergenic (CTTCTT)n|Simple_repeat|Simple_repeat 223648 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 564-169 chr6 25800707 25801126 + 2 NA exon (NM_005074, exon 11 of 13) exon (NM_005074, exon 11 of 13) 31136 NM_005074 6568 Hs.205816 NM_005074 ENSG00000124568 SLC17A1 NAPI-1|NPT-1|NPT1 solute carrier family 17 member 1 protein-coding 283-410 chr7 31302495 31302745 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 38106 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 298-52 chr10 75667953 75668165 + 2 NA intron (NR_131178, intron 1 of 7) Arthur1B|DNA|hAT-Tip100 20550 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 275-61 chr11 28369861 28370076 + 2 NA Intergenic L1MA4|LINE|L1 107580 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 373-78 chr11 40577263 40577578 + 2 NA intron (NM_020929, intron 2 of 4) MER94|DNA|hAT-Blackjack -284290 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 297-457 chr8 34592118 34592272 + 2 NA Intergenic L1MA9|LINE|L1 -191726 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 392-344 chr8 144830320 144830661 + 2 NA intron (NM_001349808, intron 3 of 4) L1M5|LINE|L1 2930 NM_001349809 7553 Hs.493218 NM_003416 ENSG00000147789 ZNF7 HF.16|KOX4|zf30 zinc finger protein 7 protein-coding 416-183 chr2 146902663 146903031 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 315790 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 344-403 chr5 155640512 155640788 + 2 NA Intergenic Intergenic 626895 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 312-310 chr21 44372721 44373025 + 2 NA intron (NM_003307, intron 5 of 31) MLT1D-int|LTR|ERVL-MaLR 19272 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 266-248 chr3 61306483 61306655 + 2 NA Intergenic L1MB1|LINE|L1 -55108 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 281-314 chr4 60900681 60900957 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -21800 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 435-264 chr9 76164499 76164922 + 2 NA intron (NR_120409, intron 11 of 19) intron (NR_120409, intron 11 of 19) 229716 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 392-335 chr8 125721114 125721410 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 229935 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 304-288 chr2 226665497 226665777 + 2 NA Intergenic Intergenic -6844 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 364-134 chr14 76818180 76818516 + 2 NA Intergenic L2|LINE|L2 -5466 NM_001370747 23357 Hs.497448 NM_015305 ENSG00000013523 ANGEL1 Ccr4e|KIAA0759 angel homolog 1 protein-coding 487-288 chr8 83980831 83981208 + 2 NA Intergenic L1MEg|LINE|L1 -201768 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 428-142 chr2 176069359 176069634 + 2 NA Intergenic Intergenic 14466 NM_001080458 344191 Hs.452341 NM_001080458 ENSG00000174279 EVX2 EVX-2 even-skipped homeobox 2 protein-coding 471-226 chr6 53963759 53964072 + 2 NA intron (NR_125842, intron 1 of 3) intron (NR_125842, intron 1 of 3) 33933 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 510-101 chr16 76570859 76571233 + 2 NA Intergenic Intergenic -63952 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 305-426 chr5 31976241 31976454 + 2 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) -40188 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 406-61 chr12 55804631 55805007 + 2 NA intron (NM_033082, intron 1 of 10) L3|LINE|CR1 12905 NM_033082 84324 Hs.505676 NM_033082 ENSG00000205323 SARNP CIP29|HCC1|HSPC316|THO1 SAP domain containing ribonucleoprotein protein-coding 340-387 chr4 19707880 19708175 + 2 NA Intergenic L1MA9|LINE|L1 -543878 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 359-80 chr11 19858636 19858887 + 2 NA intron (NM_182964, intron 3 of 37) intron (NM_182964, intron 3 of 37) -98678 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 834-26 chr21 19963507 19964120 + 2 NA Intergenic L1MA6|LINE|L1 -64058 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 321-29 chr1 186029395 186029687 + 2 NA intron (NM_031935, intron 36 of 106) L1M4|LINE|L1 -266732 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 338-319 chr22 43785395 43785704 + 2 NA intron (NM_022785, intron 2 of 31) L1MB7|LINE|L1 26756 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 420-35 chr10 52446243 52446522 + 2 NA Intergenic Intergenic 8890 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 316-70 chr10 59943338 59943589 + 2 NA Intergenic AluSx4|SINE|Alu 17450 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 413-101 chr15 88870560 88870805 + 2 NA intron (NM_001369268, intron 14 of 18) intron (NM_001369268, intron 14 of 18) 24862 NM_178232 145864 Hs.447530 NM_178232 ENSG00000140511 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 760-48 chr3 102571461 102572067 + 2 NA Intergenic Intergenic 136749 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 388-334 chr7 138598239 138598442 + 2 NA intron (NM_174959, intron 10 of 11) L1MD|LINE|L1 65884 NM_174959 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 308-254 chr2 177047841 177048123 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 164429 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 184-68 chr16 9596664 9596761 + 2 NA Intergenic MER77B|LTR|ERVL -141207 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 140-31 chr17 60875373 60875482 + 2 NA intron (NM_001330413, intron 9 of 25) intron (NM_001330413, intron 9 of 25) 197576 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 298-166 chr17 61604557 61604778 + 2 NA Intergenic L1MD|LINE|L1 -13448 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 537-173 chr4 62053376 62053865 + 2 NA intron (NM_001371343, intron 23 of 23) intron (NM_001371343, intron 23 of 23) 108145 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 333-250 chr2 95027087 95027357 + 2 NA intron (NM_022440, intron 1 of 1) intron (NM_022440, intron 1 of 1) 1514 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 427-68 chr14 47005981 47006346 + 2 NA intron (NM_001113498, intron 8 of 16) Charlie25|DNA|hAT-Charlie 337083 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 554-210 chr8 142270755 142271184 + 2 NA 3' UTR (NM_001291931, exon 11 of 11) 3' UTR (NM_001291931, exon 11 of 11) 72613 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 512-46 chr11 37545077 37545560 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -393283 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 419-84 chr14 28996509 28996779 + 2 NA Intergenic L1PREC2|LINE|L1 -210857 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 233-254 chr4 32549603 32549829 + 2 NA Intergenic Intergenic 198678 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 538-205 chr5 143976223 143976602 + 2 NA Intergenic Intergenic 164251 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 471-243 chr6 168361914 168362251 + 2 NA Intergenic Intergenic -42305 NM_214462 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 340-380 chr3 166765449 166765654 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -133132 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 466-237 chr6 160182978 160183253 + 2 NA Intergenic Intergenic 61284 NM_153187 6580 Hs.117367 NM_003057 ENSG00000175003 SLC22A1 HOCT1|OCT1|oct1_cds solute carrier family 22 member 1 protein-coding 631-7 chr1 114687340 114687860 + 2 NA intron (NM_001172626, intron 2 of 14) intron (NM_001172626, intron 2 of 14) 8018 NM_000036 270 Hs.89570 NM_000036 ENSG00000116748 AMPD1 MAD|MADA|MMDD adenosine monophosphate deaminase 1 protein-coding 526-84 chr15 91324385 91324803 + 2 NA Intergenic L1MA3|LINE|L1 -138745 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 683-70 chr5 174674239 174674638 + 2 NA Intergenic AluY|SINE|Alu -50144 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 338-428 chr5 43248350 43248575 + 2 NA intron (NR_072980, intron 2 of 3) intron (NR_072980, intron 2 of 3) 55610 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 328-529 chr7 36031784 36032071 + 2 NA Intergenic Intergenic -63383 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 319-576 chr9 84691598 84691784 + 2 NA intron (NM_001369550, intron 1 of 11) L4_B_Mam|LINE|RTE-X -9914 NM_001369551 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 259-85 chr12 17865299 17865494 + 2 NA Intergenic Intergenic 192097 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 433-208 chr4 118164809 118165062 + 2 NA intron (NM_004784, intron 6 of 13) L1MB1|LINE|L1 -113827 NR_034011 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 331-184 chr16 5520113 5520341 + 2 NA Intergenic L2a|LINE|L2 96023 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 746-53 chr3 188718420 188718962 + 2 NA intron (NM_001167672, intron 6 of 9) L2a|LINE|L2 29910 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 225-55 chr11 35244830 35245040 + 2 NA Intergenic Intergenic 81985 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 213-259 chr7 686483 686679 + 2 NA intron (NM_001164760, intron 2 of 10) intron (NM_001164760, intron 2 of 10) 25943 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 383-335 chr6 41340686 41341031 + 2 NA intron (NM_001199510, intron 2 of 5) intron (NM_001199510, intron 2 of 5) 5250 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 261-221 chr21 21507379 21507535 + 2 NA intron (NM_001352592, intron 16 of 18) intron (NM_001352592, intron 16 of 18) 229862 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 412-142 chr19 28617022 28617274 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 10460 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 298-491 chr9 28431198 28431415 + 2 NA intron (NM_152570, intron 3 of 6) L2b|LINE|L2 287999 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 379-310 chr7 7057654 7057936 + 2 NA Intergenic SATR1|Satellite|Satellite 9250 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 250-328 chr4 175274717 175274925 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 356463 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 355-531 chr9 31273419 31273701 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 107930 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 518-95 chr15 88526093 88526440 + 2 NA intron (NR_026645, intron 3 of 4) MamSINE1|SINE|tRNA-RTE 20109 NR_135743 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 373-10 chr1 50160944 50161307 + 2 NA intron (NM_001144774, intron 2 of 6) intron (NM_001144774, intron 2 of 6) 51292 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 352-120 chr12 126202774 126203058 + 2 NA Intergenic Intergenic 106924 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 239-229 chr22 44843326 44843468 + 2 NA intron (NM_181335, intron 7 of 11) L1MEc|LINE|L1 90839 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 269-414 chr8 134627557 134627819 + 2 NA intron (NM_020863, intron 3 of 15) intron (NM_020863, intron 3 of 15) 29617 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 525-131 chr2 165019418 165019847 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -64107 NM_001351539 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 271-157 chr16 79572924 79573112 + 2 NA Intergenic L1ME4b|LINE|L1 27719 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 290-320 chr4 95584587 95584785 + 2 NA Intergenic L1M2|LINE|L1 -35713 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 266-108 chr14 42800879 42801059 + 2 NA Intergenic Intergenic 1194113 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 247-150 chr16 63003435 63003617 + 2 NA Intergenic Intergenic -967088 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 350-188 chr18 5807706 5807885 + 2 NA Intergenic L1PB4|LINE|L1 -32900 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 415-42 chr11 37944350 37944740 + 2 NA intron (NR_135110, intron 1 of 2) L1PB4|LINE|L1 5944 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 362-290 chr4 15857927 15858218 + 2 NA Intergenic Intergenic 79744 NM_001775 952 Hs.479214 NM_001775 ENSG00000004468 CD38 ADPRC 1|ADPRC1 CD38 molecule protein-coding 295-427 chr7 8524135 8524380 + 2 NA intron (NM_152745, intron 2 of 2) AluSg4|SINE|Alu 90648 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 273-194 chr19 9388559 9388724 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 12325 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 449-108 chr2 4145233 4145597 + 2 NA Intergenic L1ME1|LINE|L1 171254 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 388-302 chr6 54565485 54565721 + 2 NA Intergenic Intergenic 257162 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 428-172 chr3 21216036 21216420 + 2 NA Intergenic L1M4c|LINE|L1 -189498 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 334-55 chr10 52124225 52124412 + 2 NA intron (NM_001098512, intron 7 of 17) Tigger3b|DNA|TcMar-Tigger 189810 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 423-152 chr20 39950592 39950894 + 2 NA Intergenic Intergenic -53718 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 316-309 chr2 231005836 231006073 + 2 NA intron (NM_139073, intron 4 of 4) AluJo|SINE|Alu 9830 NM_139073 130560 Hs.745178 NM_139073 ENSG00000173699 SPATA3 TSARG1 spermatogenesis associated 3 protein-coding 401-300 chr7 53737363 53737702 + 2 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 74399 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 234-268 chr4 42761465 42761635 + 2 NA Intergenic L2|LINE|L2 -104445 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 344-254 chr2 151656595 151656802 + 2 NA intron (NM_001271208, intron 48 of 182) MIRc|SINE|MIR 77778 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 365-224 chr2 223463038 223463231 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 139227 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 168-16 chr11 5617808 5617928 + 2 NA intron (NM_001003819, intron 7 of 13) MIR|SINE|MIR -2076 NM_001003827 53840 Hs.729048 NM_021616 ENSG00000258659 TRIM34 IFP1|RNF21 tripartite motif containing 34 protein-coding 252-233 chr20 61381299 61381454 + 2 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -118045 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 266-451 chr9 90502409 90502619 + 2 NA intron (NR_034157, intron 4 of 5) intron (NR_034157, intron 4 of 5) -69025 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 375-258 chr22 47934228 47934559 + 2 NA Intergenic L1MDa|LINE|L1 302719 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 395-183 chr2 153768132 153768441 + 2 NA Intergenic L1PB4|LINE|L1 -103636 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 234-183 chr2 121693728 121693912 + 2 NA intron (NR_037857, intron 2 of 3) AluSq|SINE|Alu 43055 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 671-35 chr16 36051321 36051939 + 2 NA Intergenic ALR/Alpha|Satellite|centr 305078 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 525-252 chr8 20918625 20919111 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -34765 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 338-488 chr7 16911791 16912012 + 2 NA Intergenic L1M1|LINE|L1 -29918 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 318-464 chr5 161718907 161719207 + 2 NA Intergenic L1MB3|LINE|L1 33336 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 146-40 chr2 80979163 80979248 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner 487741 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 289-424 chr6 161364896 161365072 + 2 NA intron (NM_004562, intron 10 of 11) L1MEd|LINE|L1 -90923 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 246-46 chr10 58773844 58774041 + 2 NA intron (NM_001080512, intron 3 of 20) intron (NM_001080512, intron 3 of 20) 58927 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 253-96 chr12 15549060 15549234 + 2 NA exon (NM_002848, exon 14 of 26) exon (NM_002848, exon 14 of 26) 2536 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 313-445 chr5 119966158 119966365 + 2 NA Intergenic Intergenic 336702 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 303-184 chr19 29957290 29957524 + 2 NA intron (NR_045557, intron 1 of 9) intron (NR_045557, intron 1 of 9) 15168 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 414-267 chr5 45970855 45971188 + 2 NA Intergenic L1PA3|LINE|L1 -274641 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 541-16 chr10 43724313 43724668 + 2 NA Intergenic L1M5|LINE|L1 54335 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 497-73 chr14 20081783 20082135 + 2 NA Intergenic L1MA8|LINE|L1 21914 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 311-147 chr14 75727248 75727455 + 2 NA intron (NM_015072, intron 12 of 31) L1ME1|LINE|L1 66105 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 350-109 chr12 126065283 126065537 + 2 NA Intergenic Intergenic -30582 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 258-153 chr16 52930350 52930572 + 2 NA Intergenic MIR|SINE|MIR 122412 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 227-47 chr10 83720842 83720996 + 2 NA Intergenic L1M2|LINE|L1 -43830 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 382-36 chr10 59069736 59070072 + 2 NA Intergenic L2c|LINE|L2 70386 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 407-243 chr5 25962227 25962532 + 2 NA Intergenic Intergenic 771426 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 327-30 chr1 237100776 237101014 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 58711 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 308-156 chr15 45195758 45195993 + 2 NA intron (NM_138356, intron 2 of 7) intron (NM_138356, intron 2 of 7) 5241 NM_138356 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 289-2 chr1 31911058 31911262 + 2 NA intron (NM_001369860, intron 4 of 5) intron (NM_001369860, intron 4 of 5) 26658 NM_001369858 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 225-159 chr2 89818227 89818362 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -180387 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 677-43 chr2 35589408 35589944 + 2 NA Intergenic Intergenic 118271 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 407-320 chr8 80942519 80942856 + 2 NA Intergenic Intergenic -67906 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 581-144 chr5 153007525 153007915 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -35371 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 381-314 chr5 86947785 86948073 + 2 NA Intergenic MLT1A-int|LTR|ERVL-MaLR 167025 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 252-212 chr2 134871388 134871588 + 2 NA intron (NM_001307983, intron 7 of 9) intron (NM_001307983, intron 7 of 9) 13668 NR_049856 100847069 NR_049856 ENSG00000263783 MIR5590 - microRNA 5590 ncRNA 220-243 chr3 174290267 174290483 + 2 NA 3' UTR (NM_001365935, exon 6 of 6) 3' UTR (NM_001365935, exon 6 of 6) -369579 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 328-305 chr2 236459641 236459861 + 2 NA intron (NR_073043, intron 6 of 19) L1ME4a|LINE|L1 43946 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 640-137 chr8 112351422 112351956 + 2 NA intron (NM_001363185, intron 35 of 66) intron (NM_001363185, intron 35 of 66) -291804 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 420-142 chr2 81972512 81972833 + 2 NA Intergenic L1MB1|LINE|L1 -505726 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 210-285 chr8 79837640 79837815 + 2 NA intron (NR_110954, intron 2 of 5) L1MC1|LINE|L1 34010 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 222-108 chr14 31749972 31750132 + 2 NA intron (NM_001201574, intron 1 of 5) L1M2|LINE|L1 35483 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 355-342 chr3 163225523 163225778 + 2 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 77651 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 171-65 chr20 38469760 38469894 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -3016 NM_001282918 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 417-166 chr21 18904014 18904333 + 2 NA Intergenic Intergenic -144361 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 477-164 chr2 135344503 135344862 + 2 NA intron (NM_001286569, intron 6 of 21) AluSx|SINE|Alu 185903 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 361-28 chr1 237316148 237316485 + 2 NA intron (NM_001035, intron 2 of 104) intron (NM_001035, intron 2 of 104) -154803 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 553-90 chr18 52135571 52135952 + 2 NA Intergenic AluSz|SINE|Alu -204436 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 155-17 chr1 240837067 240837191 + 2 NA intron (NM_001350116, intron 9 of 16) intron (NM_001350116, intron 9 of 16) -224974 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 335-451 chr5 169420251 169420478 + 2 NA Intergenic Intergenic -119225 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 314-349 chr21 20993310 20993487 + 2 NA Intergenic Intergenic -5011 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 219-223 chr22 39852443 39852587 + 2 NA intron (NM_152512, intron 3 of 6) Tigger3a|DNA|TcMar-Tigger 41245 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 307-442 chr7 4444908 4445116 + 2 NA Intergenic L2a|LINE|L2 -237283 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 171-13 chr10 30742283 30742384 + 2 NA Intergenic L2b|LINE|L2 19114 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 303-351 chr5 31730992 31731246 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 91988 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 242-370 chr7 53938158 53938333 + 2 NA Intergenic Intergenic -126314 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 369-441 chr9 71773137 71773361 + 2 NA Intergenic Intergenic -4736 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 476-286 chrX 3420040 3420444 + 2 NA Intergenic L1PA14|LINE|L1 -73590 NM_015419 25878 Hs.369422 NM_015419 ENSG00000101825 MXRA5 - matrix remodeling associated 5 protein-coding 254-17 chr1 175409144 175409334 + 2 NA intron (NM_003285, intron 2 of 22) intron (NM_003285, intron 2 of 22) -216252 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 345-50 chr10 23718393 23718679 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 23809 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 535-208 chr5 147823872 147824357 + 2 NA TTS (NM_003122) TTS (NM_003122) 15117 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 267-228 chr20 45609824 45609979 + 2 NA intron (NM_147198, intron 3 of 4) intron (NM_147198, intron 3 of 4) -19838 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 232-53 chr11 27146140 27146301 + 2 NA intron (NR_125767, intron 3 of 4) L1ME1|LINE|L1 72548 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 284-270 chr3 155466403 155466594 + 2 NA Intergenic L1MA1|LINE|L1 -19305 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 216-33 chr10 42379707 42379845 + 2 NA Intergenic Intergenic -11731 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 299-30 chr1 201984281 201984497 + 2 NA intron (NM_001319182, intron 1 of 10) MER4A1|LTR|ERV1 1028 NM_001319182 6051 Hs.497391 NM_020216 ENSG00000176393 RNPEP AP-B|APB arginyl aminopeptidase protein-coding 334-95 chr11 99584997 99585173 + 2 NA intron (NM_175566, intron 1 of 21) Charlie1a|DNA|hAT-Charlie 28940 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 199-187 chr4 115007553 115007735 + 2 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 105976 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 289-362 chr5 11957170 11957321 + 2 NA Intergenic Intergenic -52799 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 350-288 chr21 28172082 28172328 + 2 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 56462 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 240-90 chr11 116626531 116626740 + 2 NA Intergenic L1MC5|LINE|L1 -12787 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 547-172 chr4 188247199 188247561 + 2 NA Intergenic Intergenic 107939 NM_178556 339976 Hs.348618 NM_178556 ENSG00000184108 TRIML1 RNF209 tripartite motif family like 1 protein-coding 448-175 chr4 30987435 30987689 + 2 NA intron (NM_001173523, intron 2 of 2) FLAM_A|SINE|Alu -183582 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 354-235 chr2 167882068 167882335 + 2 NA intron (NR_131227, intron 2 of 4) intron (NR_131227, intron 2 of 4) 58943 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 452-233 chr6 70781505 70781804 + 2 NA intron (NM_021940, intron 4 of 9) intron (NM_021940, intron 4 of 9) 113124 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 407-15 chr1 206781521 206781844 + 2 NA intron (NM_153758, intron 1 of 6) intron (NM_153758, intron 1 of 6) -9188 NM_000572 3586 Hs.193717 NM_000572 ENSG00000136634 IL10 CSIF|GVHDS|IL-10|IL10A|TGIF interleukin 10 protein-coding 197-199 chr8 3419982 3420130 + 2 NA intron (NM_033225, intron 12 of 69) MIR|SINE|MIR -691605 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 681-31 chr18 52219395 52219858 + 2 NA Intergenic Intergenic -120571 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 680-98 chr5 102622504 102623005 + 2 NA intron (NR_103755, intron 1 of 2) intron (NR_103755, intron 1 of 2) 41386 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 424-198 chr4 97152786 97153055 + 2 NA Intergenic Intergenic -214006 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 210-15 chr1 119227969 119228167 + 2 NA intron (NR_125975, intron 4 of 6) intron (NR_125975, intron 4 of 6) -87396 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 627-17 chr11 47651047 47651568 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -8653 NM_001317232 23788 Hs.269944 NM_014342 ENSG00000109919 MTCH2 HSPC032|MIMP|SLC25A50 mitochondrial carrier 2 protein-coding 493-172 chr2 210688470 210688855 + 2 NA Intergenic MIR|SINE|MIR 71091 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 129-80 chr9 32125023 32125136 + 2 NA Intergenic L1ME3A|LINE|L1 -259524 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 388-11 chr1 95451233 95451463 + 2 NA Intergenic MIRb|SINE|MIR -23389 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 548-127 chr2 202710358 202710798 + 2 NA intron (NM_173511, intron 2 of 7) L1MA3|LINE|L1 75609 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 597-32 chr10 123872546 123873024 + 2 NA intron (NM_198148, intron 2 of 13) L1M6|LINE|L1 19022 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 235-214 chr22 17912652 17912831 + 2 NA intron (NM_015241, intron 1 of 31) L1M3|LINE|L1 -5855 NM_001122731 57553 Hs.528024 NM_015241 ENSG00000243156 MICAL3 MICAL-3 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 470-194 chr4 55292134 55292431 + 2 NA Intergenic L2c|LINE|L2 -53960 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 373-310 chr5 14025478 14025838 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger -81178 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 435-182 chr5 9493225 9493641 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -17900 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 325-316 chr20 63359135 63359360 + 2 NA promoter-TSS (NR_110634) promoter-TSS (NR_110634) -741 NR_110634 100130587 Hs.640129 NR_110634 ENSG00000203900 LOC100130587 - uncharacterized LOC100130587 ncRNA 204-223 chr4 103778341 103778529 + 2 NA Intergenic Intergenic -58450 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 500-272 chr7 50189980 50190433 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 94120 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 614-120 chr7 71355501 71355960 + 2 NA intron (NM_022479, intron 2 of 10) AluSx1|SINE|Alu -47960 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 139-45 chr2 123092139 123092270 + 2 NA Intergenic L1MEd|LINE|L1 -18723 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 539-67 chr14 48426225 48426654 + 2 NA Intergenic Intergenic -631425 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 466-230 chr6 124311681 124312056 + 2 NA intron (NM_001040214, intron 2 of 6) intron (NM_001040214, intron 2 of 6) 28863 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 483-169 chr3 87317337 87317621 + 2 NA Intergenic Intergenic -40895 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 548-89 chr17 16548015 16548496 + 2 NA 3' UTR (NM_001346167, exon 6 of 6) 3' UTR (NM_001346167, exon 6 of 6) 20949 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 236-291 chr5 83998454 83998601 + 2 NA intron (NM_001278642, intron 8 of 9) L1M1|LINE|L1 -277672 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 339-398 chr4 36609894 36610163 + 2 NA intron (NR_149124, intron 2 of 4) L1MB1|LINE|L1 31872 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 494-97 chr17 73305069 73305525 + 2 NA intron (NM_012121, intron 1 of 1) intron (NM_012121, intron 1 of 1) 6704 NM_012121 23580 Hs.3903 NM_012121 ENSG00000179604 CDC42EP4 BORG4|CEP4|KAIA1777 CDC42 effector protein 4 protein-coding 410-152 chr2 168501017 168501282 + 2 NA intron (NM_001256126, intron 1 of 10) PRIMA4-int|LTR|ERV1 44877 NM_001256126 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 413-63 chr12 18338570 18338933 + 2 NA intron (NM_001288774, intron 9 of 32) intron (NM_001288774, intron 9 of 32) 77211 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 352-550 chr8 142105562 142105820 + 2 NA Intergenic Intergenic -70648 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 163-95 chr4 54563789 54563889 + 2 NA Intergenic Intergenic 43292 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 283-118 chr13 37458724 37458924 + 2 NA Intergenic Intergenic 25960 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 328-76 chr11 20967107 20967393 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 297664 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 231-239 chr3 144689398 144689601 + 2 NA Intergenic L1MEg|LINE|L1 716418 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 203-86 chr17 61096825 61096975 + 2 NA intron (NM_001330413, intron 23 of 25) L1MEf|LINE|L1 270804 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 478-140 chr2 75478432 75478748 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -45478 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 333-269 chr2 148560234 148560557 + 2 NA Intergenic Intergenic -84356 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 327-72 chr11 10571673 10571924 + 2 NA intron (NR_034094, intron 1 of 2) L1MA5A|LINE|L1 -3133 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 311-310 chr20 58764144 58764336 + 2 NA Intergenic L1ME2z|LINE|L1 -9185 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 218-20 chr1 247590416 247590606 + 2 NA Intergenic Intergenic 2151 NM_001001915 81470 Hs.690208 NM_001001915 ENSG00000177489 OR2G2 OR1-32 olfactory receptor family 2 subfamily G member 2 protein-coding 330-371 chr4 15140383 15140645 + 2 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) 138033 NM_182485 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 354-160 chr16 6727727 6728076 + 2 NA intron (NM_018723, intron 3 of 15) MIRb|SINE|MIR -45908 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 248-249 chr3 106072460 106072655 + 2 NA Intergenic LTR33|LTR|ERVL -203156 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 356-220 chr19 44285854 44286124 + 2 NA TTS (NM_004234) TTS (NM_004234) 19036 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 357-262 chr3 25064015 25064285 + 2 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) 234827 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 360-300 chr3 68621213 68621493 + 2 NA Intergenic Intergenic 120716 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 432-27 chr10 27825872 27826241 + 2 NA intron (NM_018076, intron 19 of 19) L2c|LINE|L2 -80237 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 197-24 chr10 31261817 31261967 + 2 NA TTS (NR_134478) TTS (NR_134478) -56525 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 650-107 chr6 70969930 70970433 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -13121 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 425-192 chr3 137540145 137540461 + 2 NA Intergenic L1PA15|LINE|L1 -224012 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 349-387 chr4 130518191 130518512 + 2 NA Intergenic L1MEh|LINE|L1 141990 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 137-33 chr17 29404801 29404933 + 2 NA intron (NM_025142, intron 1 of 17) intron (NM_025142, intron 1 of 17) 13942 NM_020791 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 321-554 chr8 84031656 84031824 + 2 NA Intergenic MER52A|LTR|ERV1 -151047 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 375-82 chr11 92591990 92592297 + 2 NA intron (NM_001008781, intron 2 of 24) L1MC2|LINE|L1 240047 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 622-107 chr5 45715289 45715795 + 2 NA Intergenic Intergenic -19162 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 342-374 chr4 139769270 139769593 + 2 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 103612 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 496-241 chr6 134501148 134501571 + 2 NA intron (NR_038219, intron 4 of 4) intron (NR_038219, intron 4 of 4) -22462 NR_125852 101928231 Hs.634168 NR_125852 CT69 - cancer/testis associated transcript 69 ncRNA 298-484 chr8 136168375 136168575 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -362323 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 365-102 chr12 73380409 73380666 + 2 NA Intergenic L2|LINE|L2 221347 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 373-189 chr2 35557082 35557329 + 2 NA Intergenic Intergenic 85800 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 294-120 chr14 66035921 66036132 + 2 NA Intergenic Intergenic -450345 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 332-556 chr8 139803706 139803952 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -100706 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 441-67 chr13 69616314 69616716 + 2 NA Intergenic Intergenic 394169 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 556-15 chr10 5034307 5034856 + 2 NA Intergenic MST-int|LTR|ERVL-MaLR -14185 NM_001253908 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 220-88 chr12 59701362 59701544 + 2 NA intron (NR_073055, intron 1 of 6) intron (NR_073055, intron 1 of 6) 12083 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 717-11 chr1 211706871 211707356 + 2 NA Intergenic MER41A|LTR|ERV1 31351 NR_148994 91548 Hs.367839 NR_148994 LOC91548 - uncharacterized LOC91548 ncRNA 633-130 chrX 67590864 67591372 + 2 NA intron (NM_001011645, intron 2 of 8) intron (NM_001011645, intron 2 of 8) 46495 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 563-38 chr12 39050327 39050784 + 2 NA Intergenic MER33|DNA|hAT-Charlie -144964 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 184-54 chr13 97651388 97651532 + 2 NA Intergenic L2c|LINE|L2 217291 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 399-270 chr6 105661884 105662114 + 2 NA Intergenic Intergenic -258917 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 382-186 chr2 50382085 50382345 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -34459 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 291-63 chr10 132620544 132620771 + 2 NA intron (NM_005539, intron 2 of 15) L1MC|LINE|L1 -60618 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 290-36 chr1 236634205 236634465 + 2 NA Intergenic L2c|LINE|L2 -29819 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 307-5 chr1 36532009 36532181 + 2 NA Intergenic MER21B|LTR|ERVL -48781 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 318-466 chr5 170464201 170464503 + 2 NA intron (NM_001034838, intron 1 of 7) L1M4|LINE|L1 -39668 NM_001034837 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 538-129 chr2 184096594 184097117 + 2 NA Intergenic L1PBa|LINE|L1 -282120 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 324-281 chr2 139486398 139486678 + 2 NA Intergenic Intergenic 589214 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 231-292 chr5 101696354 101696560 + 2 NA Intergenic Intergenic 599827 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 671-41 chr2 53540530 53541007 + 2 NA Intergenic LTR16A|LTR|ERVL -227015 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 562-125 chr2 229561910 229562284 + 2 NA intron (NM_139072, intron 4 of 12) MLT1J|LTR|ERVL-MaLR 152458 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 367-460 chr8 110304508 110304851 + 2 NA Intergenic L1PA14|LINE|L1 -328908 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 536-249 chr9 31852046 31852487 + 2 NA Intergenic Intergenic -470776 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 510-276 chr8 56711699 56712154 + 2 NA Intergenic MER47B|DNA|TcMar-Tigger -152103 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 576-155 chr6 164251149 164251516 + 2 NA Intergenic Intergenic 570731 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 598-160 chrX 86527246 86527608 + 2 NA intron (NM_001139515, intron 3 of 11) L1ME1|LINE|L1 264459 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 289-125 chr13 51843050 51843229 + 2 NA intron (NM_001351006, intron 1 of 2) L1ME4c|LINE|L1 2038 NM_001351006 283521 Hs.649896 NM_178515 ENSG00000281106 TMEM272 LINC00282|NCRNA00282 transmembrane protein 272 protein-coding 569-10 chr1 164112675 164113188 + 2 NA Intergenic L3|LINE|CR1 -446429 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 558-119 chr20 51168992 51169326 + 2 NA Intergenic L1MEf|LINE|L1 -146052 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 267-81 chr12 24301267 24301441 + 2 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 78083 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 337-44 chr10 28903142 28903415 + 2 NA Intergenic Intergenic 56870 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 354-261 chr20 40870436 40870670 + 2 NA Intergenic AluJb|SINE|Alu -110160 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 577-26 chr10 44122609 44123011 + 2 NA Intergenic MIR3|SINE|MIR -169940 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 216-309 chr6 106342435 106342585 + 2 NA Intergenic Intergenic -16690 NM_001286107 9474 Hs.486063 NM_004849 ENSG00000057663 ATG5 APG5|APG5-LIKE|APG5L|ASP|SCAR25|hAPG5 autophagy related 5 protein-coding 356-204 chr18 3717339 3717640 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 113752 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 160-98 chr6 142857337 142857488 + 2 NA intron (NM_006734, intron 1 of 9) intron (NM_006734, intron 1 of 9) 87764 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 686-21 chr12 127794117 127794562 + 2 NA Intergenic Intergenic -87278 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 343-457 chr6 14912696 14913020 + 2 NA Intergenic Intergenic -333211 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 374-164 chr19 44242525 44242831 + 2 NA Intergenic L1ME1|LINE|L1 -17202 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 232-337 chr6 139102025 139102187 + 2 NA Intergenic L1MEi|LINE|L1 -32974 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 370-212 chr2 8458170 8458480 + 2 NA Intergenic Intergenic 125467 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 273-159 chr16 59011569 59011825 + 2 NA Intergenic Intergenic -277381 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 374-238 chr3 13899699 13899956 + 2 NA Intergenic L2a|LINE|L2 -19756 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 227-152 chr19 37066656 37066856 + 2 NA Intergenic L1ME2z|LINE|L1 -11466 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 355-429 chr6 35817556 35817821 + 2 NA intron (NM_182548, intron 2 of 3) L1MB7|LINE|L1 12336 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 267-246 chr3 13524520 13524757 + 2 NA Intergenic AluSz|SINE|Alu -24487 NM_001998 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 287-318 chr5 75779061 75779242 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -61714 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 283-271 chr21 25139959 25140179 + 2 NA Intergenic MIR|SINE|MIR 291632 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 456-351 chrX 66487621 66488019 + 2 NA Intergenic L1MDa|LINE|L1 128210 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 294-460 chr8 57817307 57817550 + 2 NA Intergenic L1M2|LINE|L1 71279 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 486-254 chr6 22926114 22926486 + 2 NA Intergenic Intergenic -208376 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 574-96 chr20 46665745 46666156 + 2 NA intron (NM_001193340, intron 2 of 12) intron (NM_001193340, intron 2 of 12) -14491 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 270-423 chr9 30907780 30907975 + 2 NA Intergenic Intergenic 473613 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 584-23 chr10 84132238 84132722 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -7029 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 522-276 chrX 83073887 83074270 + 2 NA Intergenic L1PA10|LINE|L1 -434212 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 366-220 chr2 138818384 138818612 + 2 NA Intergenic Intergenic -38108 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 602-58 chr2 78601622 78602151 + 2 NA Intergenic L3b|LINE|CR1 56355 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 514-106 chr16 3288993 3289294 + 2 NA intron (NM_005741, intron 5 of 5) intron (NM_005741, intron 5 of 5) 5652 NM_005741 10127 Hs.611475 NM_005741 ENSG00000006194 ZNF263 FPM315|ZKSCAN12|ZSCAN44 zinc finger protein 263 protein-coding 407-257 chr5 124557597 124557897 + 2 NA Intergenic L1ME3D|LINE|L1 -119227 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 342-114 chr12 48205257 48205529 + 2 NA Intergenic Intergenic -2101 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 302-309 chr4 10863861 10864031 + 2 NA Intergenic Intergenic -179178 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 375-394 chr7 145873833 145874152 + 2 NA Intergenic Intergenic -900279 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 284-275 chr4 13357924 13358195 + 2 NA Intergenic Intergenic 126281 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 385-417 chrX 79211848 79212048 + 2 NA Intergenic Intergenic 40976 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 397-172 chr2 151488910 151489230 + 2 NA intron (NM_001271208, intron 182 of 182) L1M5|LINE|L1 79168 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 324-524 chr8 66290711 66290937 + 2 NA Intergenic Intergenic 98710 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 396-113 chr15 58299301 58299660 + 2 NA Intergenic Intergenic -132511 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 220-274 chr5 16727052 16727212 + 2 NA intron (NM_012334, intron 19 of 40) MER33|DNA|hAT-Charlie -110074 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 344-274 chr20 22078196 22078398 + 2 NA Intergenic L1PA6|LINE|L1 24207 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 537-48 chr11 114981004 114981524 + 2 NA Intergenic MER33|DNA|hAT-Charlie 302737 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 262-134 chr14 84004008 84004196 + 2 NA Intergenic Intergenic -1267830 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 336-422 chr4 76425093 76425321 + 2 NA Intergenic Intergenic -10022 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 134-62 chr4 64220294 64220408 + 2 NA Intergenic Intergenic 189099 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 335-278 chr2 199881842 199882155 + 2 NA Intergenic AluJb|SINE|Alu -29295 NM_153689 205327 Hs.154494 NM_153689 ENSG00000178074 C2orf69 - chromosome 2 open reading frame 69 protein-coding 153-60 chr2 192616126 192616247 + 2 NA Intergenic L1MEg|LINE|L1 -133659 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 308-30 chr1 162881686 162881935 + 2 NA Intergenic Intergenic -12995 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 559-205 chrX 58404040 58404539 + 2 NA Intergenic ALR/Alpha|Satellite|centr -493656 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 575-179 chr7 14912941 14913435 + 2 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) -9532 NM_001350705 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 478-144 chr2 114498779 114499092 + 2 NA intron (NM_001321908, intron 2 of 25) L1MA7|LINE|L1 37358 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 291-439 chr8 62268068 62268271 + 2 NA intron (NM_001304533, intron 1 of 6) MLT1L|LTR|ERVL-MaLR 19315 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 291-225 chr2 105158142 105158379 + 2 NA Intergenic L1MDa|LINE|L1 14147 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 362-143 chr14 48338114 48338390 + 2 NA Intergenic L1PA13|LINE|L1 -543238 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 144-97 chr8 12832188 12832288 + 2 NA Intergenic Intergenic -20760 NR_152742 340357 Hs.434302 NR_015383 ENSG00000254813 LOC340357 - uncharacterized LOC340357 ncRNA 409-243 chr5 26298148 26298425 + 2 NA Intergenic L1PB4|LINE|L1 740300 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 195-232 chr7 110216856 110217029 + 2 NA Intergenic Intergenic -256729 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 284-374 chr7 29025871 29026119 + 2 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 46028 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 318-229 chr19 27886035 27886310 + 2 NA intron (NR_146734, intron 1 of 7) L1MA3|LINE|L1 -92232 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 335-107 chr11 110037106 110037352 + 2 NA Intergenic MLT2D|LTR|ERVL -56163 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 265-142 chr17 54025886 54026075 + 2 NA Intergenic Intergenic 203053 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 316-320 chr20 43349124 43349424 + 2 NA Intergenic Intergenic -108622 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 246-22 chr1 208449320 208449475 + 2 NA Intergenic Intergenic -205013 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 402-204 chr3 12221652 12221900 + 2 NA Intergenic Intergenic -62864 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 251-322 chr5 151321554 151321708 + 2 NA intron (NM_181776, intron 9 of 9) MIR|SINE|MIR -17865 NM_001145017 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 318-495 chr6 156578997 156579187 + 2 NA Intergenic L1MCc|LINE|L1 -198763 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 266-280 chr4 49106392 49106600 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 119854 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 273-116 chr13 46358201 46358385 + 2 NA intron (NM_025113, intron 9 of 14) intron (NM_025113, intron 9 of 14) 28959 NM_001286764 80183 Hs.98117 NM_025113 ENSG00000102445 RUBCNL C13orf18|KIAA0226L|PACER rubicon like autophagy enhancer protein-coding 248-165 chr19 56378871 56379063 + 2 NA non-coding (NR_003127, exon 7 of 7) non-coding (NR_003127, exon 7 of 7) -10584 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 423-225 chr5 74972224 74972607 + 2 NA Intergenic Intergenic 80143 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 390-143 chr17 65425355 65425735 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -31996 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 323-339 chr3 107605773 107605982 + 2 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 82915 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 420-230 chr5 45910509 45910725 + 2 NA Intergenic ALR/Alpha|Satellite|centr -214237 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 469-211 chr5 15000290 15000705 + 2 NA Intergenic L1MA5|LINE|L1 -128719 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 171-144 chr9 69831196 69831312 + 2 NA intron (NR_131757, intron 1 of 2) intron (NR_131757, intron 1 of 2) 10437 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 253-32 chr1 221320663 221320878 + 2 NA Intergenic Intergenic 15526 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 472-243 chr5 26814985 26815224 + 2 NA Intergenic L1PA10|LINE|L1 223482 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 635-90 chr5 114754930 114755499 + 2 NA intron (NR_130785, intron 1 of 12) L1M5|LINE|L1 18199 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 599-9 chr1 194012287 194012737 + 2 NA Intergenic L2|LINE|L2 707767 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 227-239 chr3 191617230 191617396 + 2 NA Intergenic L1M4|LINE|L1 156150 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 229-164 chr18 77781255 77781457 + 2 NA Intergenic Intergenic 212371 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 397-145 chr2 29487639 29487962 + 2 NA intron (NM_004304, intron 4 of 28) MIRb|SINE|MIR -12423 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 282-293 chr3 52297922 52298124 + 2 NA Intergenic Intergenic -3715 NR_029677 406925 NR_029677 ENSG00000207926 MIR135A1 MIRN135-1|MIRN135A1|mir-135a-1 microRNA 135a-1 ncRNA 260-179 chr18 4938804 4939008 + 2 NA Intergenic L2c|LINE|L2 -142276 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 243-249 chr20 4733865 4734003 + 2 NA intron (NR_024269, intron 1 of 1) intron (NR_024269, intron 1 of 1) 6734 NR_024267 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 329-590 chr8 126747361 126747680 + 2 NA Intergenic L1MA8|LINE|L1 -189042 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 434-249 chr6 91674152 91674429 + 2 NA intron (NR_104154, intron 2 of 3) intron (NR_104154, intron 2 of 3) 16138 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 224-276 chr6 44658535 44658731 + 2 NA Intergenic L1ME3A|LINE|L1 -106752 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 204-29 chr10 111041029 111041173 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -35928 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 552-89 chr18 8926999 8927406 + 2 NA Intergenic MER34C|LTR|ERV1 -175497 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 574-135 chr5 8395922 8396473 + 2 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 61367 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 269-193 chr2 54121566 54121770 + 2 NA intron (NM_138448, intron 1 of 3) intron (NM_138448, intron 1 of 3) -1615 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 421-147 chr2 115558651 115559020 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 215020 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 130-34 chr19 33995328 33995440 + 2 NA Intergenic L1MEf|LINE|L1 -177120 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 337-25 chr1 170591089 170591313 + 2 NA Intergenic Intergenic -58592 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 330-424 chr5 66732872 66733131 + 2 NA intron (NM_001290228, intron 1 of 4) intron (NM_001290228, intron 1 of 4) -95772 NM_015183 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 206-202 chr5 37763229 37763397 + 2 NA Intergenic MER57-int|LTR|ERV1 71509 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 220-183 chr2 164604051 164604231 + 2 NA intron (NM_004490, intron 2 of 13) L1ME3Cz|LINE|L1 17341 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 770-67 chr6 156024537 156025050 + 2 NA Intergenic L1ME3C|LINE|L1 77996 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 318-208 chr17 62975236 62975446 + 2 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 9106 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 713-44 chr2 166874656 166875121 + 2 NA Intergenic L1MC5a|LINE|L1 -13599 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 195-124 chr2 240659262 240659430 + 2 NA Intergenic L1MC1|LINE|L1 23539 NM_001102467 653437 Hs.437167 NM_001102467 ENSG00000185176 AQP12B INSSA3 aquaporin 12B protein-coding 347-169 chr16 73363693 73363878 + 2 NA Intergenic L2a|LINE|L2 -23020 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 336-29 chr1 107329784 107330045 + 2 NA intron (NM_001113226, intron 2 of 6) L2c|LINE|L2 181845 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 113-15 chr13 52011010 52011091 + 2 NA intron (NM_001005918, intron 1 of 16) intron (NM_001005918, intron 1 of 16) 400 NM_001005918 540 Hs.492280 NM_000053 ENSG00000123191 ATP7B PWD|WC1|WD|WND ATPase copper transporting beta protein-coding 513-90 chr15 87980710 87981047 + 2 NA intron (NM_001320134, intron 12 of 12) intron (NM_001320134, intron 12 of 12) -34610 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 325-226 chr17 68706655 68706960 + 2 NA Intergenic Intergenic 78653 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 457-58 chr13 90040861 90041195 + 2 NA Intergenic Intergenic 78689 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 250-121 chr14 52023705 52023897 + 2 NA intron (NM_007361, intron 12 of 21) intron (NM_007361, intron 12 of 21) 34255 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 360-378 chr5 129577618 129577964 + 2 NA intron (NM_133638, intron 7 of 22) L1MEg|LINE|L1 -117102 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 205-6 chr1 30200909 30201042 + 2 NA Intergenic L1M5|LINE|L1 -163363 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 312-5 chr1 40356831 40357011 + 2 NA Intergenic L1MA3|LINE|L1 -16806 NM_022733 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 232-276 chr4 114537073 114537294 + 2 NA Intergenic L2a|LINE|L2 -61219 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 131-35 chr2 21007221 21007305 + 2 NA exon (NM_000384, exon 26 of 29) exon (NM_000384, exon 26 of 29) 36810 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 324-226 chr18 42137464 42137713 + 2 NA Intergenic Intergenic -49080 NR_046456 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 142-71 chr7 46542718 46542833 + 2 NA Intergenic Intergenic 154347 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 301-413 chr7 12590588 12590743 + 2 NA intron (NM_033128, intron 1 of 13) HERVFH21-int|LTR|ERV1 1142 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 214-115 chr16 21014579 21014718 + 2 NA intron (NM_001347886, intron 41 of 61) L1MC2|LINE|L1 113386 NR_161432 57149 Hs.745012 NM_020424 ENSG00000102897 LYRM1 A211C6.1 LYR motif containing 1 protein-coding 345-405 chr5 5987446 5987739 + 2 NA Intergenic Intergenic 349700 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 413-32 chr10 31704936 31705277 + 2 NA Intergenic Intergenic 203820 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 567-176 chr8 36573016 36573440 + 2 NA Intergenic Intergenic -211146 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 261-71 chr11 97498099 97498315 + 2 NA Intergenic L1M4b|LINE|L1 989782 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 259-290 chr4 91826151 91826376 + 2 NA Intergenic Intergenic 451039 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 399-322 chr9 24520512 24520778 + 2 NA Intergenic Intergenic 25031 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 592-37 chr12 83579186 83579601 + 2 NA Intergenic Intergenic 892238 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 388-66 chr11 74544456 74544674 + 2 NA Intergenic AluSc|SINE|Alu -48017 NR_046409 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 220-391 chr9 69967367 69967579 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -76108 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 204-135 chr2 20016220 20016354 + 2 NA Intergenic Intergenic -3619 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 437-99 chr16 73134029 73134428 + 2 NA intron (NM_207385, intron 2 of 3) intron (NM_207385, intron 2 of 3) 10219 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 310-546 chr9 29084114 29084331 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 128077 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 191-156 chr4 141786489 141786612 + 2 NA Intergenic MIRb|SINE|MIR 149967 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 579-141 chr6 88207117 88207485 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -39952 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 345-170 chr15 49830149 49830429 + 2 NA Intergenic Intergenic 209241 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 380-221 chr20 48155587 48155901 + 2 NA Intergenic Intergenic -165627 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 477-192 chr3 15951373 15951696 + 2 NA Intergenic LTR24C|LTR|ERV1 77763 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 396-205 chr22 20386092 20386318 + 2 NA Intergenic Intergenic -7910 NM_001256524 7625 Hs.517418 NM_003426 ENSG00000185252 ZNF74 COS52|ZFP520|ZNF520|hZNF7 zinc finger protein 74 protein-coding 325-503 chr7 52458627 52458876 + 2 NA Intergenic Intergenic -576882 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 184-87 chr2 56810042 56810177 + 2 NA Intergenic Intergenic -624339 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 348-18 chr1 114085312 114085517 + 2 NA Intergenic L1MB3|LINE|L1 67026 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 529-229 chr9 17019135 17019646 + 2 NA Intergenic Intergenic -115650 NM_017738 54875 Hs.435381 NM_017738 ENSG00000044459 CNTLN C9orf101|C9orf39|bA340N12.1 centlein protein-coding 402-195 chr21 29755373 29755657 + 2 NA intron (NR_027021, intron 2 of 4) MIR|SINE|MIR 7340 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 295-19 chr1 159661004 159661294 + 2 NA Intergenic L1MA4|LINE|L1 53440 NM_001329058 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 243-302 chr3 131185661 131185852 + 2 NA TTS (NM_001321223) TTS (NM_001321223) 158028 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 386-230 chr3 31367589 31367856 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -165203 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 238-273 chr4 100657247 100657428 + 2 NA Intergenic Intergenic 17776 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 277-221 chr20 5714067 5714236 + 2 NA Intergenic AluJr|SINE|Alu -36236 NM_001303478 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 331-466 chr6 112416182 112416358 + 2 NA Intergenic Intergenic 68940 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 559-141 chr4 130119349 130119896 + 2 NA Intergenic L1PB4|LINE|L1 -256739 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 536-19 chr1 193801566 193801986 + 2 NA Intergenic AluY|SINE|Alu 497031 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 224-155 chr2 137922725 137922860 + 2 NA intron (NR_120402, intron 2 of 2) intron (NR_120402, intron 2 of 2) 5140 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 144-105 chr8 139502567 139502668 + 2 NA Intergenic Intergenic 200506 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 245-285 chr5 81870155 81870387 + 2 NA Intergenic Intergenic -101752 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 318-364 chr3 97372765 97372958 + 2 NA intron (NM_001080448, intron 5 of 17) L1ME3Cz|LINE|L1 -66746 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 123-48 chr5 81746634 81746737 + 2 NA intron (NM_012446, intron 1 of 16) intron (NM_012446, intron 1 of 16) 4568 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 600-62 chr2 50078647 50079176 + 2 NA intron (NM_001330093, intron 19 of 22) L1MC4a|LINE|L1 -104708 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 231-107 chr15 69399460 69399634 + 2 NA intron (NR_132971, intron 1 of 1) Tigger2a|DNA|TcMar-Tigger -14802 NM_001367804 9493 Hs.270845 NM_004856 ENSG00000137807 KIF23 CHO1|KNSL5|MKLP-1|MKLP1 kinesin family member 23 protein-coding 352-24 chr1 193994505 193994763 + 2 NA Intergenic L1MA4|LINE|L1 689889 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 353-450 chr6 61756054 61756240 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 182017 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 261-201 chr2 172309024 172309260 + 2 NA Intergenic L2c|LINE|L2 -118194 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 246-90 chr12 29948211 29948433 + 2 NA Intergenic Intergenic -163563 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 395-89 chr14 47094960 47095240 + 2 NA intron (NM_001113498, intron 6 of 16) L2b|LINE|L2 248146 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 494-85 chr16 65094500 65094841 + 2 NA intron (NM_001330576, intron 1 of 11) intron (NM_001330576, intron 1 of 11) 27393 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 330-295 chr2 141930497 141930729 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 201088 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 158-56 chr2 125805984 125806117 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 311935 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 356-84 chr11 72918943 72919272 + 2 NA intron (NM_014824, intron 9 of 19) intron (NM_014824, intron 9 of 19) 104696 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 407-311 chr7 135860206 135860464 + 2 NA Intergenic AluJb|SINE|Alu -111522 NM_205855 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 245-119 chr14 38188156 38188330 + 2 NA Intergenic MIR|SINE|MIR -19661 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 345-268 chr2 99813021 99813289 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) 292428 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 225-82 chr13 36242214 36242400 + 2 NA intron (NM_001144981, intron 7 of 7) L1ME3|LINE|L1 -27692 NM_001282147 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 536-31 chr10 33531758 33532201 + 2 NA Intergenic Intergenic -197074 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 348-250 chr2 226921148 226921450 + 2 NA intron (NM_001349069, intron 8 of 8) L1MA3|LINE|L1 85245 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 209-197 chr3 55627954 55628141 + 2 NA intron (NR_132749, intron 16 of 17) L1M5|LINE|L1 31422 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 356-68 chr10 118491123 118491330 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 104422 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 354-229 chr2 147103385 147103728 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 516499 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 506-112 chr18 3883916 3884272 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -1259 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 522-142 chr2 121027916 121028244 + 2 NA Intergenic L1M6|LINE|L1 235799 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 345-467 chr6 56393107 56393426 + 2 NA intron (NM_001318752, intron 1 of 28) L1M1|LINE|L1 862 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 386-359 chr8 118048129 118048498 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 63506 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 189-217 chr8 130868339 130868489 + 2 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 172495 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 302-463 chr8 119664757 119664925 + 2 NA intron (NM_001330600, intron 1 of 25) AluSz|SINE|Alu 8549 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 251-129 chr17 57199309 57199519 + 2 NA Intergenic Intergenic -56437 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 302-373 chr6 40103299 40103515 + 2 NA Intergenic L1MB7|LINE|L1 -168945 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 581-36 chr13 68913243 68913719 + 2 NA Intergenic Intergenic -28156 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 243-392 chr6 82760926 82761086 + 2 NA Intergenic HAL1|LINE|L1 304835 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 384-147 chr18 36899223 36899496 + 2 NA intron (NM_001353918, intron 5 of 9) L2a|LINE|L2 24455 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 348-480 chr7 5446193 5446429 + 2 NA Intergenic Intergenic -17384 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 401-126 chr17 53011753 53012078 + 2 NA Intergenic Intergenic 26410 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 380-327 chr6 4482927 4483183 + 2 NA Intergenic Intergenic -5743 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 304-393 chr4 123439116 123439356 + 2 NA Intergenic AluSz|SINE|Alu 39696 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 651-127 chr8 138414238 138414667 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 82809 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 246-289 chr4 36022701 36022883 + 2 NA intron (NR_146893, intron 35 of 36) intron (NR_146893, intron 35 of 36) 221147 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 230-43 chr10 64210458 64210675 + 2 NA Intergenic Intergenic -614962 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 516-18 chr10 22034980 22035316 + 2 NA Intergenic Intergenic -31418 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 355-450 chr7 12819959 12820176 + 2 NA Intergenic Intergenic 132434 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 348-553 chr9 38171914 38172164 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -102812 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 235-166 chr2 56655172 56655382 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -469507 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 275-384 chr9 81403958 81404138 + 2 NA Intergenic L1MEd|LINE|L1 285487 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 331-354 chr3 82664175 82664372 + 2 NA Intergenic L1MC3|LINE|L1 678131 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 433-106 chr17 47655201 47655567 + 2 NA intron (NM_002265, intron 3 of 21) intron (NM_002265, intron 3 of 21) 4319 NM_001276453 3837 Hs.532793 NM_002265 ENSG00000108424 KPNB1 IMB1|IPO1|IPOB|Impnb|NTF97 karyopherin subunit beta 1 protein-coding 328-490 chr6 39325688 39325969 + 2 NA Intergenic Intergenic -2860 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 316-214 chr17 71845289 71845482 + 2 NA Intergenic Intergenic 180594 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 530-6 chr1 62806520 62806882 + 2 NA intron (NM_178221, intron 3 of 10) intron (NM_178221, intron 3 of 10) 22569 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 287-244 chr3 32615940 32616202 + 2 NA Intergenic HAL1|LINE|L1 -45147 NM_001329135 51143 Hs.529495 NM_016141 ENSG00000144635 DYNC1LI1 DLC-A|DNCLI1|LIC1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 229-150 chr17 69165818 69165970 + 2 NA intron (NM_080282, intron 26 of 39) Tigger2|DNA|TcMar-Tigger -23999 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 450-292 chr8 12924420 12924800 + 2 NA Intergenic AluJr|SINE|Alu -21063 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 228-231 chr3 189196095 189196286 + 2 NA intron (NM_198485, intron 1 of 5) MIR3|SINE|MIR 24219 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 317-183 chr16 82928320 82928533 + 2 NA intron (NM_001220490, intron 2 of 12) L1ME4a|LINE|L1 61872 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 451-155 chr3 150189425 150189791 + 2 NA Intergenic L1MC1|LINE|L1 -48911 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 412-143 chr19 43056314 43056552 + 2 NA Intergenic Intergenic 26268 NM_031246 5670 Hs.709200 NM_031246 ENSG00000242221 PSG2 CEA|PSBG2|PSG1 pregnancy specific beta-1-glycoprotein 2 protein-coding 390-10 chr1 107704188 107704512 + 2 NA intron (NM_006113, intron 17 of 26) intron (NM_006113, intron 17 of 26) -15851 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 180-55 chr16 9854080 9854226 + 2 NA intron (NM_001134408, intron 4 of 13) intron (NM_001134408, intron 4 of 13) 327914 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 432-294 chr8 142321132 142321376 + 2 NA intron (NM_001366903, intron 6 of 9) intron (NM_001366903, intron 6 of 9) 81928 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 479-120 chr2 228871479 228871793 + 2 NA Intergenic Intergenic -260241 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 328-42 chr1 238055122 238055373 + 2 NA Intergenic L1M4a1|LINE|L1 -164325 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 220-11 chr1 99038617 99038795 + 2 NA intron (NR_033940, intron 1 of 2) MIR|SINE|MIR -33845 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 623-42 chr16 77144352 77144871 + 2 NA Intergenic L1MCc|LINE|L1 -46579 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 411-283 chr8 15061882 15062115 + 2 NA intron (NM_139167, intron 1 of 7) L1MEb|LINE|L1 176433 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 425-253 chr6 13004374 13004750 + 2 NA intron (NM_001322313, intron 1 of 12) L1PA8|LINE|L1 -8992 NM_001322314 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 338-130 chr12 75845725 75845933 + 2 NA Intergenic L2a|LINE|L2 185947 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 391-309 chr6 73672189 73672458 + 2 NA Intergenic Intergenic -18331 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 281-466 chrX 42192681 42192893 + 2 NA Intergenic Intergenic -269233 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 415-189 chr4 24618267 24618505 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -33832 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 334-89 chr11 50560000 50560279 + 2 NA Intergenic ALR/Alpha|Satellite|centr 150992 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 330-432 chr5 116092543 116092711 + 2 NA exon (NM_016144, exon 4 of 7) exon (NM_016144, exon 4 of 7) 7165 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 395-130 chr16 81846104 81846372 + 2 NA intron (NM_002661, intron 2 of 32) LTR16A1|LTR|ERVL 66947 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 226-307 chr6 85815862 85816042 + 2 NA Intergenic L1M2|LINE|L1 -137219 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 228-15 chr1 115570255 115570435 + 2 NA Intergenic LTR37-int|LTR|ERV1 -71625 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 220-78 chr11 133121483 133121664 + 2 NA intron (NM_001012393, intron 1 of 7) LTR88b|LTR|Gypsy? -177805 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 248-134 chr15 97625290 97625518 + 2 NA Intergenic Intergenic -64706 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 315-347 chr4 104438782 104439077 + 2 NA Intergenic Intergenic -52036 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 417-91 chr15 51820309 51820544 + 2 NA Intergenic L1M1|LINE|L1 -9227 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 377-127 chr14 78276592 78276928 + 2 NA intron (NR_073547, intron 2 of 20) intron (NR_073547, intron 2 of 20) 106387 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 390-171 chr2 14592858 14593240 + 2 NA Intergenic Intergenic -39668 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 241-305 chr5 68059195 68059344 + 2 NA Intergenic AluJo|SINE|Alu -130607 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 425-300 chr8 78569414 78569729 + 2 NA intron (NM_181839, intron 1 of 2) L1MDa|LINE|L1 -11068 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 182-110 chr3 117687357 117687516 + 2 NA intron (NR_146652, intron 2 of 3) intron (NR_146652, intron 2 of 3) 3489 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 740-33 chr17 51052269 51052750 + 2 NA intron (NM_001130527, intron 3 of 29) intron (NM_001130527, intron 3 of 29) -5631 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 306-72 chr11 22529588 22529748 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -37649 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 340-281 chr2 139581119 139581379 + 2 NA Intergenic L1MEc|LINE|L1 683925 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 401-84 chr14 43168839 43169150 + 2 NA Intergenic Intergenic 1338289 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 297-510 chr9 34646341 34646579 + 2 NA promoter-TSS (NM_000155) promoter-TSS (NM_000155) -129 NM_001258332 2592 Hs.522090 NM_000155 ENSG00000213930 GALT - galactose-1-phosphate uridylyltransferase protein-coding 575-154 chr5 116306277 116306824 + 2 NA Intergenic Intergenic 50807 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 308-158 chr15 51761430 51761682 + 2 NA intron (NM_001142885, intron 1 of 8) AluJo|SINE|Alu 9959 NM_001142885 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 320-602 chr9_KI270823v1_alt 412639 412820 + 2 NA Intergenic Intergenic 19527 NM_001127610 570 Hs.284712 NM_001701 ENSG00000136881 BAAT BACAT|BAT bile acid-CoA:amino acid N-acyltransferase protein-coding 326-570 chr9 68518646 68518817 + 2 NA intron (NM_021965, intron 10 of 10) L1MEg|LINE|L1 22136 NM_153237 169693 Hs.663056 NM_153237 ENSG00000181778 TMEM252 C9orf71 transmembrane protein 252 protein-coding 283-406 chr7 7115753 7115978 + 2 NA Intergenic Intergenic -19079 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 303-312 chr4 42692525 42692716 + 2 NA Intergenic Intergenic -35515 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 157-98 chr4 153722830 153722936 + 2 NA intron (NM_173662, intron 5 of 8) MER33|DNA|hAT-Charlie 37141 NM_173662 285533 Hs.388364 NM_173662 ENSG00000145428 RNF175 - ring finger protein 175 protein-coding 355-419 chr5 165698268 165698449 + 2 NA Intergenic Intergenic 1228012 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 394-153 chr2 14203654 14203936 + 2 NA Intergenic Intergenic 197163 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 415-14 chr1 118211689 118211972 + 2 NA Intergenic L1MA3|LINE|L1 -26602 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 175-20 chr1 232429623 232429769 + 2 NA intron (NM_020808, intron 14 of 20) intron (NM_020808, intron 14 of 20) 85912 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 217-127 chr15 83485088 83485270 + 2 NA intron (NM_003027, intron 1 of 8) L1M6|LINE|L1 -5435 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 442-215 chr4 97920022 97920325 + 2 NA intron (NM_174952, intron 8 of 10) ERVL-E-int|LTR|ERVL 223303 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 324-42 chr1 232482407 232482692 + 2 NA intron (NM_020808, intron 4 of 20) intron (NM_020808, intron 4 of 20) 33059 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 209-123 chr17 13635816 13635965 + 2 NA Intergenic Intergenic -33961 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 255-305 chr4 137937330 137937484 + 2 NA Intergenic L1M1|LINE|L1 -151607 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 290-7 chr1 65813936 65814216 + 2 NA intron (NM_002600, intron 1 of 16) L2|LINE|L2 21181 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 363-185 chr18 1811286 1811534 + 2 NA Intergenic L1MC3|LINE|L1 -451781 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 477-231 chr4 175656959 175657278 + 2 NA intron (NM_001261447, intron 1 of 4) intron (NM_001261447, intron 1 of 4) 130558 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 360-144 chr15 73412293 73412574 + 2 NA Intergenic L1ME3A|LINE|L1 -30731 NM_001348772 283677 Hs.743574 NM_001042367 ENSG00000183324 REC114 C15orf60|CT147 REC114 meiotic recombination protein protein-coding 1066-12 chr2 118551948 118552573 + 2 NA Intergenic Intergenic 50706 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 542-162 chr5 25274867 25275267 + 2 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 84114 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 561-87 chr19 24157878 24158393 + 2 NA Intergenic Intergenic 5312 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 275-59 chr11 15792150 15792353 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 148366 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 577-64 chr15 49557756 49558279 + 2 NA intron (NM_001330293, intron 8 of 10) L1P4c|LINE|L1 62801 NM_152647 196951 Hs.712959 NM_152647 ENSG00000166262 FAM227B C15orf33 family with sequence similarity 227 member B protein-coding 541-138 chr20 18847333 18847677 + 2 NA Intergenic Intergenic -17302 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 499-176 chr3 191546449 191546778 + 2 NA intron (NR_120606, intron 2 of 6) THE1B|LTR|ERVL-MaLR 85450 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 472-157 chr2 100696535 100696967 + 2 NA Intergenic L1M4b|LINE|L1 93012 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 659-44 chr18 1507812 1508184 + 2 NA Intergenic MLT2A2|LTR|ERVL -148369 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 637-13 chr10 23729661 23730239 + 2 NA intron (NM_001098500, intron 1 of 18) AluY|SINE|Alu 35223 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 260-223 chr2 153679151 153679333 + 2 NA Intergenic MLT2F|LTR|ERVL -192680 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 245-81 chr11 91700624 91700837 + 2 NA Intergenic Intergenic -524304 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 364-158 chr16 65831784 65831984 + 2 NA Intergenic MIRb|SINE|MIR -255584 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 331-440 chr5 153378396 153378686 + 2 NA Intergenic LTR16E1|LTR|ERVL -111983 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 198-14 chr1 188945922 188946060 + 2 NA Intergenic Intergenic 1502363 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 376-147 chr18 12788701 12788949 + 2 NA intron (NM_080423, intron 8 of 8) intron (NM_080423, intron 8 of 8) -39403 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 330-180 chr16 6523468 6523657 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -250247 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 218-162 chr2 107689273 107689417 + 2 NA Intergenic Intergenic -64767 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 290-346 chr5 66038013 66038280 + 2 NA intron (NM_001253697, intron 14 of 25) intron (NM_001253697, intron 14 of 25) -92573 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 216-148 chr18 60095189 60095374 + 2 NA Intergenic AluJr4|SINE|Alu 195285 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 359-396 chr5 72884249 72884548 + 2 NA intron (NM_001364293, intron 11 of 24) intron (NM_001364293, intron 11 of 24) 5807 NR_039968 100616152 NR_039968 ENSG00000263593 MIR4804 - microRNA 4804 ncRNA 357-499 chrX 149333719 149333899 + 2 NA Intergenic Intergenic 171497 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 761-51 chr4 179991159 179991689 + 2 NA Intergenic L1ME3C|LINE|L1 1167725 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 437-33 chr10 118430627 118430974 + 2 NA Intergenic L1ME4c|LINE|L1 73692 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 359-35 chr1 193776233 193776578 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 471660 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 501-256 chr8 66470876 66471309 + 2 NA Intergenic AluJb|SINE|Alu -22474 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 359-181 chr17 32984420 32984766 + 2 NA Intergenic Intergenic -7254 NM_001317226 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 408-109 chr14 98764418 98764623 + 2 NA Intergenic Intergenic 52907 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 354-488 chr8 139659213 139659483 + 2 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 43775 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 328-447 chr5 46381653 46381854 + 2 NA Intergenic ALR/Alpha|Satellite|centr -685373 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 354-353 chr5 4852870 4853101 + 2 NA Intergenic HAL1b|LINE|L1 79504 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 209-192 chr3 22016299 22016484 + 2 NA Intergenic Intergenic 59252 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 446-161 chr2 192814770 192815092 + 2 NA Intergenic L1MA4|LINE|L1 65086 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 407-41 chr10 121150169 121150468 + 2 NA Intergenic L1M3|LINE|L1 298956 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 305-4 chr1 42298596 42298756 + 2 NA intron (NM_001198850, intron 2 of 12) L1PB4|LINE|L1 36279 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 251-22 chr1 217948172 217948405 + 2 NA Intergenic Intergenic 55388 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 278-278 chr3 84356520 84356707 + 2 NA Intergenic MER94|DNA|hAT-Blackjack 512962 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 332-284 chr2 225540284 225540582 + 2 NA intron (NM_001371273, intron 4 of 7) THE1B|LTR|ERVL-MaLR 139547 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 220-267 chr4 144848077 144848230 + 2 NA Intergenic L1ME3A|LINE|L1 201997 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 212-205 chr3 26262443 26262571 + 2 NA Intergenic L2c|LINE|L2 -360299 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 372-281 chr20 19580077 19580365 + 2 NA intron (NM_020689, intron 4 of 16) intron (NM_020689, intron 4 of 16) -295625 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 383-190 chr2 78451584 78451888 + 2 NA Intergenic Intergenic -93795 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 175-141 chr6 22980002 22980092 + 2 NA Intergenic L1PA10|LINE|L1 -262123 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 467-170 chr3 11492968 11493320 + 2 NA intron (NM_001349238, intron 17 of 17) LTR28B|LTR|ERV1 75654 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 418-268 chr7 74671817 74672079 + 2 NA intron (NM_001163636, intron 1 of 33) AluJo|SINE|Alu 14230 NM_033000 2969 Hs.647041 NM_001518 ENSG00000263001 GTF2I BAP135|BTKAP1|DIWS|GTFII-I|IB291|SPIN|TFII-I|WBS|WBSCR6 general transcription factor IIi protein-coding 198-124 chr2 82679110 82679238 + 2 NA Intergenic L1MB7|LINE|L1 -177629 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 192-133 chr3 89120474 89120609 + 2 NA intron (NM_182644, intron 1 of 6) intron (NM_182644, intron 1 of 6) 12920 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 501-95 chr19 47979801 47980287 + 2 NA intron (NM_001128326, intron 2 of 5) intron (NM_001128326, intron 2 of 5) 12126 NM_001128326 100131137 Hs.651072 NM_001128326 ENSG00000188334 BSPH1 BSP1|ELSPBP2 binder of sperm protein homolog 1 protein-coding 411-170 chr22 18730734 18731045 + 2 NA Intergenic (TTATA)n|Simple_repeat|Simple_repeat -3025 NR_136561 642643 NR_136561 ENSG00000182824 FAM230E LINC01662 family with sequence similarity 230 member E ncRNA 228-334 chr8 59412712 59412900 + 2 NA Intergenic L1PA17|LINE|L1 293596 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 340-217 chr18 46878268 46878454 + 2 NA intron (NR_136685, intron 1 of 11) intron (NR_136685, intron 1 of 11) 39146 NR_136685 9063 Hs.57769 NM_004671 ENSG00000078043 PIAS2 ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4 protein inhibitor of activated STAT 2 protein-coding 310-420 chr5 106255489 106255744 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 755398 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 229-378 chr8 35795746 35795927 + 2 NA 3' UTR (NM_080872, exon 17 of 17) 3' UTR (NM_080872, exon 17 of 17) -85516 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 493-43 chr11 36677776 36678152 + 2 NA Intergenic L1PA5|LINE|L1 -79685 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 374-329 chr6 8167576 8167888 + 2 NA Intergenic Intergenic -65137 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 237-251 chr3 116223602 116223806 + 2 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) -136320 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 245-263 chr4 126111893 126112085 + 2 NA Intergenic L1MC3|LINE|L1 604730 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 552-45 chr12 48468257 48468700 + 2 NA Intergenic L2a|LINE|L2 -4187 NM_012404 23519 Hs.532658 NM_012404 ENSG00000139223 ANP32D PP32R2 acidic nuclear phosphoprotein 32 family member D protein-coding 933-6 chr10 91100487 91101091 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 52291 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 296-298 chr3 84117956 84118237 + 2 NA Intergenic L2c|LINE|L2 751479 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 265-14 chr1 110801099 110801294 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -70003 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 566-63 chr17 3353750 3354184 + 2 NA Intergenic L1M1|LINE|L1 43722 NR_024128 390756 Hs.632245 NM_001005334 ENSG00000180068 OR3A4P OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P olfactory receptor family 3 subfamily A member 4 pseudogene pseudo 408-97 chr13 73378292 73378546 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -185825 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 232-68 chr12 10625728 10625881 + 2 NA intron (NM_018423, intron 7 of 10) MER5B|DNA|hAT-Charlie -12195 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 500-239 chr5 173745887 173746178 + 2 NA non-coding (NR_108027, exon 1 of 3) non-coding (NR_108027, exon 1 of 3) 177 NR_108027 101928136 Hs.449267 NR_108027 ENSG00000253686 LINC01484 - long intergenic non-protein coding RNA 1484 ncRNA 297-289 chr3 19674061 19674259 + 2 NA Intergenic LTR67B|LTR|ERVL 260057 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 238-427 chrX 58075586 58075771 + 2 NA Intergenic ALR/Alpha|Satellite|centr -165045 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 215-95 chr15 26378815 26379027 + 2 NA Intergenic Intergenic 250169 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 463-96 chr15 48521479 48521789 + 2 NA intron (NM_000138, intron 9 of 65) intron (NM_000138, intron 9 of 65) 124154 NM_000138 2200 Hs.591133 NM_000138 ENSG00000166147 FBN1 ACMICD|ECTOL1|FBN|GPHYSD2|MASS|MFLS|MFS1|OCTD|SGS|SSKS|WMS|WMS2 fibrillin 1 protein-coding 360-270 chr20 56296316 56296607 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 47729 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 305-441 chr5 89924376 89924569 + 2 NA Intergenic LTR16A1|LTR|ERVL 92248 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 419-37 chr10 88357060 88357460 + 2 NA intron (NM_018363, intron 5 of 6) MIR|SINE|MIR 226058 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 265-375 chr7 129102663 129102892 + 2 NA Intergenic Intergenic -23494 NR_002144 407835 Hs.592273 NR_002144 LOC407835 - mitogen-activated protein kinase kinase 2 pseudogene pseudo 145-87 chr8 76011857 76011982 + 2 NA Intergenic L1MD|LINE|L1 -394735 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 263-446 chr9 30802075 30802329 + 2 NA Intergenic L2a|LINE|L2 -393748 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 280-50 chr10 61866581 61866767 + 2 NA Intergenic MIRb|SINE|MIR -35025 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 166-53 chr2 118461872 118461995 + 2 NA Intergenic L1M5|LINE|L1 141033 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 228-337 chr8 81932699 81932818 + 2 NA Intergenic L1MA2|LINE|L1 -90472 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 241-308 chr5 92817423 92817631 + 2 NA Intergenic Intergenic 753816 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 394-327 chr8 87535670 87536013 + 2 NA Intergenic Intergenic 338174 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 465-151 chr2 229169445 229169739 + 2 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 62500 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 499-35 chr10 125348025 125348354 + 2 NA Intergenic MLT2B1|LTR|ERVL -187159 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 865-27 chr20 2074953 2075676 + 2 NA Intergenic L1MCa|LINE|L1 -26513 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 445-284 chr9 27711963 27712282 + 2 NA Intergenic Intergenic -138256 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 430-119 chr18 3731445 3731690 + 2 NA intron (NM_001242762, intron 3 of 9) AluJb|SINE|Alu 113791 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 416-127 chr15 37364292 37364655 + 2 NA Intergenic Intergenic -263162 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 450-138 chr2 65526981 65527361 + 2 NA Intergenic Intergenic -94572 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 333-358 chr3 99497986 99498204 + 2 NA Intergenic Intergenic -140499 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 295-11 chr1 84987283 84987441 + 2 NA intron (NM_001330647, intron 1 of 14) L1ME3Cz|LINE|L1 9751 NM_153259 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 401-219 chr3 163653935 163654246 + 2 NA Intergenic L1MCa|LINE|L1 -350789 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 436-317 chr8 131598861 131599181 + 2 NA Intergenic Intergenic -305072 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 197-99 chr2 101552843 101552950 + 2 NA Intergenic L1MC5|LINE|L1 -77784 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 324-493 chr7 54031266 54031505 + 2 NA Intergenic L1MD|LINE|L1 -219454 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 299-175 chr17 69768820 69769048 + 2 NA intron (NR_109972, intron 3 of 4) Tigger1|DNA|TcMar-Tigger 174947 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 398-52 chr11 14914369 14914758 + 2 NA Intergenic Intergenic -22358 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 244-63 chr12 4267920 4268125 + 2 NA intron (NR_149145, intron 1 of 3) intron (NR_149145, intron 1 of 3) -5740 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 166-117 chr8 90297894 90298050 + 2 NA intron (NR_051989, intron 2 of 3) L2c|LINE|L2 76484 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 189-98 chr2 184353140 184353293 + 2 NA Intergenic Intergenic -25759 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 219-294 chr5 110650598 110650753 + 2 NA intron (NM_001039763, intron 2 of 13) L1MC3|LINE|L1 75996 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 298-106 chr13 45653627 45653792 + 2 NA Intergenic Intergenic -37970 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 337-271 chr2 131406494 131406717 + 2 NA non-coding (NR_036499, exon 2 of 3) non-coding (NR_036499, exon 2 of 3) 3704 NR_036499 389043 Hs.586791 NR_036499 LINC01120 - long intergenic non-protein coding RNA 1120 ncRNA 192-16 chr10 9443372 9443533 + 2 NA Intergenic Intergenic -147859 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 190-98 chr2 219871201 219871345 + 2 NA Intergenic Intergenic 33616 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 472-244 chr5 40574265 40574560 + 2 NA Intergenic Intergenic -105503 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 662-62 chr3 94977380 94977885 + 2 NA intron (NR_015400, intron 3 of 7) intron (NR_015400, intron 3 of 7) 39369 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 373-44 chr10 21168151 21168451 + 2 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -5689 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 286-243 chr20 11226149 11226338 + 2 NA Intergenic MIR|SINE|MIR 47140 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 378-63 chr10 80966540 80966783 + 2 NA Intergenic Intergenic 316864 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 286-175 chr18 63136342 63136534 + 2 NA intron (NM_000633, intron 2 of 2) L2c|LINE|L2 182942 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 203-138 chr22 35054958 35055126 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -11116 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 220-342 chr7 45348209 45348414 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 190520 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 306-172 chr15 90405847 90406129 + 2 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 17746 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 266-320 chr5 32682226 32682447 + 2 NA Intergenic Intergenic -8536 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 311-215 chr18 51450898 51451129 + 2 NA intron (NR_040074, intron 1 of 2) (AT)n|Simple_repeat|Simple_repeat 58971 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 309-204 chr17 54626991 54627294 + 2 NA Intergenic Intergenic -273549 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 645-54 chr2 59768936 59769432 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 551476 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 376-433 chr9 113833628 113833958 + 2 NA Intergenic L1MB7|LINE|L1 -42489 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 531-179 chr4 66493945 66494365 + 2 NA Intergenic Intergenic 217331 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 256-139 chr15 78390480 78390675 + 2 NA Intergenic L2a|LINE|L2 -46854 NM_001354994 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA iron responsive element binding protein 2 protein-coding 415-193 chr4 32259468 32259730 + 2 NA Intergenic Intergenic -91439 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 742-23 chr12 127766452 127767159 + 2 NA Intergenic L1MA1|LINE|L1 -111217 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 529-99 chr2 51761025 51761498 + 2 NA intron (NR_135237, intron 5 of 10) (TA)n|Simple_repeat|Simple_repeat -609387 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 342-532 chr8 125999462 125999655 + 2 NA Intergenic L2a|LINE|L2 -48361 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 238-24 chr1 198955999 198956161 + 2 NA Intergenic L1MA9|LINE|L1 -18651 NR_040073 100131234 Hs.711077 NR_040073 MIR181A1HG - MIR181A1 host gene ncRNA 547-207 chr6 132584632 132585040 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie 4902 NM_003967 9038 Hs.248198 NM_003967 ENSG00000135569 TAAR5 PNR trace amine associated receptor 5 protein-coding 169-11 chr10 44499201 44499336 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -114171 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 345-489 chr7 28969969 28970276 + 2 NA Intergenic Intergenic -9845 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 148-3 chr1 33495475 33495574 + 2 NA 3' UTR (NM_145238, exon 8 of 8) 3' UTR (NM_145238, exon 8 of 8) 22879 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 189-216 chr8 129896531 129896656 + 2 NA intron (NM_001353307, intron 4 of 13) intron (NM_001353307, intron 4 of 13) 43218 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 320-501 chr7 683117 683339 + 2 NA intron (NM_001164760, intron 2 of 10) intron (NM_001164760, intron 2 of 10) 29296 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 280-263 chr3 104508797 104509015 + 2 NA Intergenic L1MC|LINE|L1 -857807 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 422-94 chr15 45245181 45245469 + 2 NA Intergenic L1MCc|LINE|L1 -6909 NM_004212 9153 Hs.367833 NM_004212 ENSG00000137860 SLC28A2 CNT2|HCNT2|HsT17153|SPNT1 solute carrier family 28 member 2 protein-coding 143-55 chr3 88625348 88625484 + 2 NA Intergenic Intergenic 286960 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 145-39 chr17 74508635 74508737 + 2 NA Intergenic L1M1|LINE|L1 22789 NM_174892 124599 Hs.313343 NM_174892 ENSG00000178789 CD300LB CD300b|CLM-7|CLM7|CMRF35-A2|IREM-3|IREM3|TREM-5|TREM5 CD300 molecule like family member b protein-coding 320-205 chr17 54153036 54153330 + 2 NA Intergenic Intergenic 330256 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 378-423 chr8 18367289 18367602 + 2 NA Intergenic L1PREC2|LINE|L1 -23837 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 271-164 chr17 56878131 56878348 + 2 NA Intergenic Intergenic 6674 NR_027025 246754 Hs.720736 NR_027025 MTVR2 - mouse mammary tumor virus receptor homolog 2 pseudo 440-88 chr16 73634534 73634854 + 2 NA Intergenic Intergenic 247889 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 379-208 chr22 50510611 50510877 + 2 NA intron (NM_152299, intron 1 of 19) L2a|LINE|L2 2520 NM_152299 29781 Hs.730607 NM_014551 ENSG00000025770 NCAPH2 CAPH2 non-SMC condensin II complex subunit H2 protein-coding 504-286 chrX 81660941 81661306 + 2 NA Intergenic Intergenic 459021 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 780 chr1 42028567 42029196 + 2 NA intron (NR_038261, intron 1 of 3) MER102a|DNA|hAT-Charlie 7053 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 212-212 chr3 81368119 81368321 + 2 NA Intergenic L1MA4|LINE|L1 374352 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 355-133 chr12 115075868 115076179 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -391848 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 247-91 chr12 67402866 67403105 + 2 NA Intergenic Intergenic 39574 NR_146500 102724433 NR_146500 ENSG00000256172 LINC02420 - long intergenic non-protein coding RNA 2420 ncRNA 247-234 chr20 40625591 40625778 + 2 NA Intergenic Intergenic 63552 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 309-66 chr10 111850816 111851097 + 2 NA Intergenic Intergenic 332809 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 638-52 chr16 76072518 76072982 + 2 NA Intergenic L1M4a2|LINE|L1 -204651 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 520-198 chr3 178068173 178068655 + 2 NA Intergenic Intergenic 251549 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 373-39 chr1 244749448 244749721 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -85722 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 203-194 chr5 167712804 167712958 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -42048 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 302-391 chr6 128860678 128860958 + 2 NA Intergenic L1MA2|LINE|L1 -22320 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 316-499 chr6 164301114 164301291 + 2 NA Intergenic Intergenic 520861 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 561-213 chr8 142431703 142432115 + 2 NA Intergenic Intergenic -17740 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 468-292 chr7 29243128 29243545 + 2 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -34366 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 579-162 chr8 62382152 62382709 + 2 NA intron (NM_001304533, intron 1 of 6) Tigger2|DNA|TcMar-Tigger 133576 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 183-97 chr3 160499124 160499247 + 2 NA 3' UTR (NM_002268, exon 17 of 17) 3' UTR (NM_002268, exon 17 of 17) -13438 NR_148403 100174949 NR_148401 ENSG00000248710 TRIM59-IFT80 IFT80-L TRIM59-IFT80 protein ncRNA 341-373 chr4 35316962 35317227 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 926845 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 315-501 chr8 138279993 138280213 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -196558 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 210-83 chr14 96715966 96716174 + 2 NA Intergenic Intergenic -25121 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 397-10 chr1 169672183 169672453 + 2 NA Intergenic Intergenic 36539 NR_029467 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 279-412 chr8 50049317 50049526 + 2 NA intron (NR_135798, intron 1 of 15) L1MB7|LINE|L1 -114710 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 416-88 chr12 20056852 20057186 + 2 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 42334 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 456-281 chr6 95385541 95385929 + 2 NA Intergenic Intergenic 191716 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 502-244 chr7 49810039 49810395 + 2 NA intron (NR_136188, intron 2 of 3) L1ME1|LINE|L1 34884 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 316-142 chr12 114129776 114130003 + 2 NA Intergenic Intergenic 111881 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 559-111 chr21 29870598 29870939 + 2 NA intron (NM_000830, intron 1 of 16) L2c|LINE|L2 69228 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 300-457 chr8 69162833 69163022 + 2 NA Intergenic AluJr|SINE|Alu -58737 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 362-174 chr15 97935172 97935414 + 2 NA Intergenic L1M5|LINE|L1 -25410 NM_183376 91947 Hs.6093 NM_183376 ENSG00000140450 ARRDC4 - arrestin domain containing 4 protein-coding 421-216 chr4 90384841 90385179 + 2 NA intron (NM_207491, intron 3 of 7) L1PB3|LINE|L1 149979 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 453-66 chr14 41796648 41796939 + 2 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 189937 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 259-399 chr8 88685432 88685583 + 2 NA Intergenic L1PA15-16|LINE|L1 -358024 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 291-465 chr8 117954430 117954627 + 2 NA intron (NM_000127, intron 1 of 10) MLT1L|LTR|ERVL-MaLR -33615 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 277-96 chr13 20260823 20261045 + 2 NA Intergenic Intergenic -28539 NM_001110221 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 255-318 chr5 23759034 23759230 + 2 NA Intergenic Intergenic -192216 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 330-183 chr16 24144451 24144633 + 2 NA intron (NM_002738, intron 9 of 16) AluSz|SINE|Alu -58574 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 572-127 chr4 88311938 88312310 + 2 NA intron (NR_134238, intron 2 of 4) LTR12C|LTR|ERV1 27194 NR_134238 105369192 Hs.733660 NR_134236 ENSG00000246375 PPM1K-DT - PPM1K divergent transcript ncRNA 540-43 chr11 107201577 107201965 + 2 NA Intergenic Intergenic -183295 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 205-298 chr9 126447587 126447726 + 2 NA intron (NM_033446, intron 7 of 9) intron (NM_033446, intron 7 of 9) -37152 NR_045006 641373 Hs.742606 NR_045006 NRON NCRNA00194 non-coding repressor of NFAT ncRNA 468-82 chr14 62628805 62629117 + 2 NA Intergenic L1PA4|LINE|L1 416497 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 540-18 chr1 150269015 150269387 + 2 NA promoter-TSS (NR_045033) promoter-TSS (NR_045033) 8 NR_045035 51107 Hs.108408 NM_016022 ENSG00000117362 APH1A 6530402N02Rik|APH-1|APH-1A|CGI-78 aph-1 homolog A, gamma-secretase subunit protein-coding 393-204 chr21 28124338 28124670 + 2 NA intron (NR_126012, intron 5 of 5) intron (NR_126012, intron 5 of 5) 34101 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 192-76 chr16 17267978 17268105 + 2 NA intron (NM_022166, intron 2 of 11) Charlie1b|DNA|hAT-Charlie 133537 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 524-141 chr21 45666328 45666663 + 2 NA intron (NM_001348240, intron 1 of 16) L1M4|LINE|L1 -2379 NM_001348241 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 368-344 chr4 176365419 176365740 + 2 NA Intergenic L1PA16|LINE|L1 45613 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 201-203 chr5 104832577 104832763 + 2 NA Intergenic Intergenic -266804 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 234-86 chr13 63260603 63260743 + 2 NA intron (NR_126409, intron 3 of 6) MLT1G|LTR|ERVL-MaLR 67421 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 231-217 chr3 21463196 21463397 + 2 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) 57570 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 292-168 chr17 32989227 32989413 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -2527 NM_001317226 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 163-130 chrX 81855566 81855718 + 2 NA Intergenic L1M3b|LINE|L1 653540 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 336-191 chr16 13752007 13752322 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -167993 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 288-165 chr18 79768186 79768423 + 2 NA Intergenic L1MEd|LINE|L1 86874 NM_001202504 9150 Hs.465490 NM_004715 ENSG00000060069 CTDP1 CCFDN|FCP1 CTD phosphatase subunit 1 protein-coding 393-370 chr8 131894465 131894752 + 2 NA Intergenic Intergenic -9485 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 182-37 chr12 17200950 17201076 + 2 NA Intergenic Intergenic 212266 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 224-64 chr12 46735555 46735687 + 2 NA Intergenic L1PA15-16|LINE|L1 90376 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 605-8 chr1 211156184 211156772 + 2 NA Intergenic L1PA12|LINE|L1 -22330 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 548-80 chr15 26599242 26599636 + 2 NA intron (NM_001191320, intron 2 of 6) L1M3b|LINE|L1 29651 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 425-275 chr7 9268640 9268929 + 2 NA Intergenic Intergenic -365486 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 610-125 chr4 54523631 54524025 + 2 NA Intergenic L1M6|LINE|L1 83303 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 331-258 chr2 45230660 45230856 + 2 NA intron (NR_033831, intron 1 of 5) MLT1C|LTR|ERVL-MaLR 24183 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 371-403 chr8 139117557 139117744 + 2 NA Intergenic Intergenic -203609 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 321-343 chr21 20118549 20118861 + 2 NA Intergenic Intergenic 139980 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 418-57 chr12 79763022 79763275 + 2 NA Intergenic LTR33C|LTR|ERVL -72051 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 257-349 chr6 56117823 56118013 + 2 NA intron (NR_134851, intron 16 of 29) L1MA1|LINE|L1 -26256 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 412-340 chr9 25603458 25603736 + 2 NA Intergenic Intergenic 75261 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 305-550 chr8 128432101 128432392 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 132433 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 199-10 chr1 112881151 112881303 + 2 NA promoter-TSS (NR_162120) promoter-TSS (NR_162120) -823 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 444-259 chr8 87080787 87081157 + 2 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 214557 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 412-216 chr3 104477265 104477479 + 2 NA Intergenic L1PREC2|LINE|L1 -889341 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 355-72 chr10 123796928 123797182 + 2 NA intron (NM_198148, intron 6 of 13) intron (NM_198148, intron 6 of 13) 94752 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 704-82 chr8 41079220 41079635 + 2 NA Intergenic LTR43B|LTR|ERV1 -181601 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 424-216 chr5 30348407 30348693 + 2 NA Intergenic Intergenic 467990 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 352-383 chr4 109588607 109588871 + 2 NA intron (NM_017918, intron 1 of 7) L4_C_Mam|LINE|RTE-X 28493 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 215-60 chr11 132990201 132990337 + 2 NA intron (NM_001012393, intron 1 of 7) Tigger16a|DNA|TcMar-Tigger -46501 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 528-12 chr1 87624499 87624930 + 2 NA Intergenic Intergenic -253059 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 963-28 chr6 160309364 160309954 + 2 NA Intergenic L1M3e|LINE|L1 -38719 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 529-137 chr3 55066982 55067438 + 2 NA intron (NM_018398, intron 35 of 37) intron (NM_018398, intron 35 of 37) -100108 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 541-88 chr17 55983761 55984093 + 2 NA Intergenic L1MA8|LINE|L1 -169548 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 341-9 chr1 41510977 41511187 + 2 NA exon (NM_001127714, exon 8 of 8) exon (NM_001127714, exon 8 of 8) -26399 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 542-26 chr10 90487958 90488283 + 2 NA intron (NR_110657, intron 2 of 6) intron (NR_110657, intron 2 of 6) 52685 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 538-214 chr6 159663543 159664046 + 2 NA Intergenic L1PB1|LINE|L1 29447 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 501-54 chr12 90378554 90379026 + 2 NA Intergenic Intergenic 85472 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 163-65 chr2 119924436 119924535 + 2 NA intron (NM_002830, intron 12 of 26) HAL1b|LINE|L1 -88592 NM_001184938 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 263-370 chr6 134832252 134832493 + 2 NA Intergenic Intergenic 117729 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 765-41 chr3 61831015 61831401 + 2 NA intron (NM_002841, intron 2 of 29) intron (NM_002841, intron 2 of 29) 269637 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 711-57 chr5 53213618 53214084 + 2 NA Intergenic Intergenic 104009 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 379-125 chr18 4910796 4911005 + 2 NA Intergenic AluJb|SINE|Alu -170282 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 345-62 chr10 58081310 58081647 + 2 NA Intergenic Intergenic 186416 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 456-305 chr7 91802268 91802704 + 2 NA Intergenic AluSg|SINE|Alu 78216 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 278-216 chr2 71405321 71405506 + 2 NA intron (NM_001252613, intron 17 of 27) intron (NM_001252613, intron 17 of 27) -48148 NM_001130979 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 322-78 chr10 126480422 126480666 + 2 NA intron (NR_146939, intron 4 of 11) intron (NR_146939, intron 4 of 11) 40949 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 536-4 chr1 58209977 58210399 + 2 NA intron (NM_001353980, intron 1 of 5) MIRb|SINE|MIR 40315 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 310-549 chr9 34831248 34831467 + 2 NA non-coding (NR_024481, exon 4 of 4) non-coding (NR_024481, exon 4 of 4) 7229 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 337-587 chr9 91573310 91573574 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -62809 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 245-26 chr1 238773860 238774052 + 2 NA Intergenic L1ME1|LINE|L1 -287939 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 210-211 chr4 149445060 149445264 + 2 NA intron (NM_001363507, intron 12 of 13) intron (NM_001363507, intron 12 of 13) 290867 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 355-355 chr4 30542378 30542657 + 2 NA Intergenic Intergenic -177852 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 226-82 chr13 93155642 93155801 + 2 NA Intergenic Intergenic -71086 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 166-19 chr12 96673121 96673253 + 2 NA intron (NM_001306084, intron 39 of 67) MIR1_Amn|SINE|MIR 183610 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 276-24 chr1 183191295 183191500 + 2 NA intron (NM_005562, intron 1 of 22) intron (NM_005562, intron 1 of 22) 5133 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 311-156 chr15 54818088 54818263 + 2 NA Intergenic Intergenic -238572 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 361-422 chr7 106702131 106702427 + 2 NA Intergenic L1MC1|LINE|L1 -41121 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 307-329 chr4 17915450 17915637 + 2 NA intron (NR_158563, intron 4 of 5) MLT1F1-int|LTR|ERVL-MaLR 104564 NR_073124 64151 Hs.567567 NM_022346 ENSG00000109805 NCAPG CAPG|CHCG|NY-MEL-3|YCG1 non-SMC condensin I complex subunit G protein-coding 246-77 chr11 119953279 119953520 + 2 NA Intergenic L1MEd|LINE|L1 175454 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 317-223 chr2 45125360 45125550 + 2 NA Intergenic Intergenic -116003 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 283-472 chr9 119744161 119744343 + 2 NA Intergenic L2b|LINE|L2 -190808 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 238-120 chr15 87206793 87206969 + 2 NA Intergenic Intergenic -218455 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 287-336 chr5 163690667 163690937 + 2 NA Intergenic Intergenic 185183 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 248-200 chr2 119085819 119086014 + 2 NA Intergenic MIRb|SINE|MIR 72835 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 211-135 chr2 21278192 21278350 + 2 NA Intergenic Intergenic 154285 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 241-350 chr6 163128920 163129153 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 62966 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 355-26 chr1 221110460 221110678 + 2 NA Intergenic L1ME1|LINE|L1 225727 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 175-77 chr2 75789718 75789839 + 2 NA Intergenic Intergenic -78863 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 199-171 chr3 186402406 186402564 + 2 NA Intergenic L2c|LINE|L2 -37860 NR_151710 107986164 Hs.131227 NR_151708 ENSG00000234548 LINC02020 - long intergenic non-protein coding RNA 2020 ncRNA 356-395 chr5 60305390 60305730 + 2 NA intron (NM_001364599, intron 1 of 16) L1M6|LINE|L1 67103 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 443-219 chr4 42243371 42243673 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -90867 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 537-150 chr3 993457 993804 + 2 NA Intergenic Intergenic -99394 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 371-93 chr13 57883403 57883658 + 2 NA Intergenic Intergenic 251786 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 507-179 chr4 22155193 22155652 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 184244 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 189-118 chr21 30220051 30220211 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -4034 NM_199328 9073 Hs.162209 NM_012132 ENSG00000156284 CLDN8 HEL-S-79 claudin 8 protein-coding 133-36 chr2 80588985 80589096 + 2 NA intron (NM_001282599, intron 8 of 11) intron (NM_001282599, intron 8 of 11) 275661 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 513-244 chr6 55732780 55733112 + 2 NA Intergenic Intergenic 142644 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 323-322 chr3 26290807 26291124 + 2 NA Intergenic Intergenic -331841 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 248-141 chr16 52753149 52753334 + 2 NA Intergenic Intergenic -146266 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 330-112 chr12 17739966 17740179 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 66773 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 254-406 chr8 77273129 77273358 + 2 NA Intergenic L1MC5a|LINE|L1 -177454 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 257-362 chr6 113152730 113152947 + 2 NA Intergenic Intergenic 280609 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 249-62 chr10 109801698 109801841 + 2 NA Intergenic Intergenic 121477 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 456-257 chr5 111867090 111867482 + 2 NA intron (NM_001142474, intron 2 of 3) MLT1B|LTR|ERVL-MaLR -45222 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 373-321 chr5 54951899 54952115 + 2 NA Intergenic Intergenic 33586 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 220-147 chr19 47455573 47455764 + 2 NA intron (NM_015063, intron 3 of 9) intron (NM_015063, intron 3 of 9) 16225 NM_015063 6543 Hs.172884 NM_015063 ENSG00000118160 SLC8A2 NCX2 solute carrier family 8 member A2 protein-coding 338-66 chr10 65818117 65818318 + 2 NA Intergenic L1ME3|LINE|L1 246792 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 170-90 chr3 22299610 22299740 + 2 NA Intergenic L1MA8|LINE|L1 342536 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 474-186 chr3 117395681 117396008 + 2 NA Intergenic Intergenic 295081 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 379-279 chr5 145376180 145376388 + 2 NA Intergenic L1PA13|LINE|L1 459058 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 475-107 chr18 357643 358012 + 2 NA intron (NM_130386, intron 2 of 9) Tigger3c|DNA|TcMar-Tigger -89780 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 375-281 chr4 42162441 42162641 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -9886 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 310-432 chr5 153826107 153826267 + 2 NA Intergenic AluY|SINE|Alu 72800 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 470-128 chr2 68022582 68022970 + 2 NA Intergenic L1MA3|LINE|L1 40228 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 492-200 chr5 4778083 4778436 + 2 NA Intergenic Intergenic 4778 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 230-23 chr1 182918052 182918227 + 2 NA intron (NM_030933, intron 6 of 9) (TA)n|Simple_repeat|Simple_repeat 35027 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 383-254 chr3 119075299 119075534 + 2 NA intron (NM_152538, intron 3 of 8) L1PA15|LINE|L1 -40570 NM_001353321 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 217-91 chr12 90418195 90418341 + 2 NA Intergenic L1MA9|LINE|L1 124950 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 352-347 chr4 20127292 20127511 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -124504 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 289-99 chr12 34571499 34571665 + 2 NA Intergenic ALR/Alpha|Satellite|centr 549086 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 175-67 chr18 12829545 12829682 + 2 NA intron (NM_080423, intron 4 of 8) HAL1M8|LINE|L1 11349 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 318-196 chr16 50439324 50439578 + 2 NA Intergenic L1MC1|LINE|L1 -44318 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 324-288 chr2 166685701 166685998 + 2 NA Intergenic L1PA5|LINE|L1 -198878 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 280-4 chr1 37171775 37171957 + 2 NA Intergenic Intergenic 10303 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 290-333 chr5 29751728 29751965 + 2 NA Intergenic Intergenic -128714 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 381-192 chr2 57737373 57737601 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -170164 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 698-43 chr2 228588936 228589631 + 2 NA intron (NR_151716, intron 1 of 3) L2a|LINE|L2 22112 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 348-503 chr7 127153034 127153324 + 2 NA intron (NR_163850, intron 1 of 9) intron (NR_163850, intron 1 of 9) -61948 NR_110194 101928333 Hs.551332 NR_110194 ENSG00000236340 LOC101928333 - uncharacterized LOC101928333 ncRNA 314-125 chr12 34572082 34572368 + 2 NA Intergenic ALR/Alpha|Satellite|centr 549729 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 180-10 chr1 171066852 171066957 + 2 NA Intergenic Intergenic -24001 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 342-285 chr20 42139723 42139908 + 2 NA intron (NM_133170, intron 19 of 31) intron (NM_133170, intron 19 of 31) -521438 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 228-160 chr2 54526708 54526874 + 2 NA intron (NM_003128, intron 2 of 35) intron (NM_003128, intron 2 of 35) -2431 NR_002229 56969 Hs.657366 NM_020217 RPL23AP32 RPL23A_9_220 ribosomal protein L23a pseudogene 32 pseudo 211-95 chr15 58932312 58932471 + 2 NA exon (NM_001013843, exon 2 of 21) exon (NM_001013843, exon 2 of 21) 1288 NR_135042 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 281-71 chr11 98427162 98427382 + 2 NA Intergenic L1MA8|LINE|L1 -593677 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 412-115 chr16 80606013 80606339 + 2 NA intron (NM_152342, intron 6 of 6) intron (NM_152342, intron 6 of 6) -33368 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 317-316 chr3 123778643 123778840 + 2 NA intron (NM_053025, intron 4 of 33) intron (NM_053025, intron 4 of 33) 89097 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 328-492 chr6 40040655 40040908 + 2 NA Intergenic Intergenic -106319 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 439-145 chr2 148160734 148161101 + 2 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -139313 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 286-473 chr9 32916167 32916409 + 2 NA Intergenic Intergenic 85288 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 307-74 chr10 123284252 123284445 + 2 NA Intergenic Intergenic 129946 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 207-207 chr3 194970310 194970492 + 2 NA Intergenic L1MB7|LINE|L1 -124187 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 613-55 chr2 48831696 48832120 + 2 NA Intergenic L1PA12|LINE|L1 -76184 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 254-404 chr8 60557759 60557910 + 2 NA intron (NM_001242644, intron 1 of 6) AluJo|SINE|Alu 40847 NM_002865 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 345-210 chr18 2439734 2439952 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 131662 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 208-144 chr20 82624 82812 + 2 NA Intergenic Intergenic -4954 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 267-42 chr10 28997250 28997445 + 2 NA Intergenic Intergenic 150939 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 336-180 chr15 81205660 81205950 + 2 NA intron (NM_001352686, intron 1 of 18) L1M5|LINE|L1 6329 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 585-169 chr9 27661682 27662151 + 2 NA Intergenic Intergenic -88050 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 242-238 chr3 82394058 82394235 + 2 NA intron (NR_147146, intron 3 of 8) L1MA3|LINE|L1 408004 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 434-133 chr2 20842066 20842401 + 2 NA Intergenic Intergenic -19103 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 457-41 chr11 112987702 112988035 + 2 NA intron (NM_181351, intron 1 of 18) L1MA9|LINE|L1 -24408 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 272-299 chr4 43138341 43138586 + 2 NA Intergenic L1MA5|LINE|L1 245197 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 239-317 chr5 78802526 78802698 + 2 NA intron (NM_000046, intron 6 of 7) intron (NM_000046, intron 6 of 7) -153840 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 297-439 chr7 62825073 62825270 + 2 NA Intergenic ALR/Alpha|Satellite|centr 478885 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 427-69 chr14 53511640 53511961 + 2 NA Intergenic Intergenic 358446 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 482-2 chr1 44237532 44237967 + 2 NA intron (NR_110056, intron 2 of 3) intron (NR_110056, intron 2 of 3) 6534 NR_046817 100874278 Hs.132497 NR_046817 ENSG00000233602 ERI3-IT1 - ERI3 intronic transcript 1 ncRNA 192-101 chr2 99782454 99782609 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -292514 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 662-16 chr12 42746612 42747105 + 2 NA Intergenic Intergenic 54642 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 310-96 chr12 10182376 10182651 + 2 NA intron (NM_153022, intron 1 of 3) intron (NM_153022, intron 1 of 3) 3481 NM_153022 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 278-421 chr8 112380255 112380395 + 2 NA intron (NM_001363185, intron 34 of 66) intron (NM_001363185, intron 34 of 66) -263168 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 626-128 chr7 49336713 49337178 + 2 NA Intergenic L1MC5a|LINE|L1 412398 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 243-187 chr19 35203948 35204111 + 2 NA Intergenic Intergenic 24696 NM_152481 148109 Hs.128069 NM_152481 ENSG00000177558 FAM187B TMEM162 family with sequence similarity 187 member B protein-coding 421-139 chr2 64294442 64294853 + 2 NA Intergenic Intergenic -46112 NR_039632 100616265 NR_039632 ENSG00000283222 MIR4433A MIR4433|hsa-mir-4433a microRNA 4433a ncRNA 201-241 chr8 103901514 103901708 + 2 NA intron (NM_001282881, intron 2 of 20) intron (NM_001282881, intron 2 of 20) 82391 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 289-272 chr20 58724997 58725219 + 2 NA Intergenic L1MEf|LINE|L1 32308 NM_024663 79716 Hs.654868 NM_024663 ENSG00000215440 NPEPL1 bA261P9.2 aminopeptidase like 1 protein-coding 343-501 chr7 25632678 25633012 + 2 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 30295 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 360-430 chr7 37935045 37935333 + 2 NA intron (NM_001242948, intron 1 of 2) intron (NM_001242948, intron 1 of 2) 13870 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 272-408 chr6 165914587 165914732 + 2 NA Intergenic Intergenic -72892 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 242-54 chr11 30626459 30626661 + 2 NA Intergenic Intergenic -40207 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 422-113 chr17 43857899 43858211 + 2 NA TTS (NM_001168324) TTS (NM_001168324) 10879 NM_145273 146894 Hs.147313 NM_145273 ENSG00000161649 CD300LG CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4 CD300 molecule like family member g protein-coding 233-340 chr6 91410810 91410999 + 2 NA Intergenic L1MA9|LINE|L1 -110756 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 509-7 chr1 71453823 71454304 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 372739 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 135-10 chr10 112867758 112867867 + 2 NA Intergenic L1MC5a|LINE|L1 44316 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 182-142 chr5 123715011 123715146 + 2 NA Intergenic L1MA9|LINE|L1 169661 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 475-296 chr9 72948941 72949260 + 2 NA intron (NM_000689, intron 1 of 12) intron (NM_000689, intron 1 of 12) 3953 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 288-139 chr15 99255345 99255558 + 2 NA intron (NR_135755, intron 1 of 8) intron (NR_135755, intron 1 of 8) -2074 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 233-65 chr11 98513306 98513471 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -507561 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 196-4 chr1 31831666 31831794 + 2 NA Intergenic Intergenic -15679 NM_144569 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 195-246 chr9 5310426 5310580 + 2 NA Intergenic Intergenic -5787 NM_134441 6019 Hs.127032 NM_005059 ENSG00000107014 RLN2 H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2 relaxin 2 protein-coding 318-67 chr10 61226067 61226365 + 2 NA Intergenic L1MCb|LINE|L1 209941 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 214-162 chr2 60014183 60014326 + 2 NA Intergenic L1MB2|LINE|L1 368782 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 255-126 chr15 58760131 58760352 + 2 NA Intergenic Intergenic -10534 NM_001320570 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 395-352 chr9 1021913 1022302 + 2 NA Intergenic L1ME1|LINE|L1 -26036 NR_110643 102800446 Hs.171043 NR_110643 LINC01230 TCONS_00015639|linc-DMRT2|lnc-DRMT2 long intergenic non-protein coding RNA 1230 ncRNA 479-82 chr17 61397951 61398313 + 2 NA intron (NR_125750, intron 1 of 2) CpG 1474 NR_125751 103689912 Hs.410998 NR_125749 ENSG00000267280 TBX2-AS1 - TBX2 antisense RNA 1 ncRNA 352-490 chr7 31206421 31206703 + 2 NA Intergenic MIRb|SINE|MIR 134164 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 522-42 chr11 32839935 32840213 + 2 NA intron (NM_024081, intron 4 of 5) intron (NM_024081, intron 4 of 5) 10147 NM_024081 79056 Hs.471695 NM_024081 ENSG00000135378 PRRG4 PRGP4|TMG4 proline rich and Gla domain 4 protein-coding 245-313 chr6 139781791 139782002 + 2 NA intron (NR_038399, intron 1 of 2) MER20B|DNA|hAT-Charlie 10823 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 210-290 chr8 104035839 104036011 + 2 NA intron (NR_145710, intron 24 of 29) intron (NR_145710, intron 24 of 29) -187410 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 244-176 chr2 142550609 142550812 + 2 NA Intergenic L1MB1|LINE|L1 -326954 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 566-103 chr2 192939097 192939577 + 2 NA Intergenic L1M4b|LINE|L1 189492 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 126-11 chr10 96281130 96281243 + 2 NA Intergenic L1MC5a|LINE|L1 -9610 NM_001114094 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 330-213 chr17 71093449 71093677 + 2 NA Intergenic Intergenic 108616 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 416-167 chr2 53446151 53446458 + 2 NA Intergenic Intergenic -321479 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 343-480 chr6 120673915 120674228 + 2 NA Intergenic Intergenic 658892 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 565-54 chr16 46690643 46691199 + 2 NA intron (NR_037620, intron 1 of 6) intron (NR_037620, intron 1 of 6) 1262 NR_037620 23594 Hs.49760 NM_014321 ENSG00000091651 ORC6 ORC6L origin recognition complex subunit 6 protein-coding 335-367 chr3 162993111 162993326 + 2 NA Intergenic MER65A|LTR|ERV1 310083 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 191-217 chr8 125965906 125966059 + 2 NA Intergenic Intergenic -14785 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 366-463 chr9 12053956 12054303 + 2 NA Intergenic Intergenic -639256 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 321-171 chr14 62237819 62238052 + 2 NA Intergenic MIRb|SINE|MIR -97962 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 302-127 chr14 56373454 56373626 + 2 NA Intergenic L1PA11|LINE|L1 -140791 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 209-230 chr4 101082367 101082498 + 2 NA intron (NM_001130691, intron 7 of 12) intron (NM_001130691, intron 7 of 12) 158440 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 416-195 chr2 228343298 228343630 + 2 NA Intergenic Intergenic -161777 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 341-44 chr1 215827190 215827457 + 2 NA intron (NM_206933, intron 47 of 71) intron (NM_206933, intron 47 of 71) -245142 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 522-215 chr5 156619994 156620396 + 2 NA intron (NM_001128209, intron 5 of 7) MIR|SINE|MIR -230100 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 413-191 chr3 83049259 83049650 + 2 NA Intergenic L2|LINE|L2 1063312 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 589-27 chr12 75224150 75224554 + 2 NA Intergenic Intergenic -10388 NR_149000 100130268 Hs.524596 NR_149000 ENSG00000254451 LOC100130268 - uncharacterized LOC100130268 ncRNA 209-72 chr12 65362743 65362922 + 2 NA intron (NM_001031679, intron 4 of 6) intron (NM_001031679, intron 4 of 6) 83845 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 298-48 chr10 64471494 64471712 + 2 NA Intergenic L1PB1|LINE|L1 -353925 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 475-154 chr2 209014695 209015117 + 2 NA Intergenic Intergenic -409141 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 531-65 chr14 95962050 95962524 + 2 NA Intergenic Intergenic -77037 NM_001282464 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 319-175 chr16 50409958 50410265 + 2 NA Intergenic L1MC5a|LINE|L1 -14978 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 229-317 chr5 123703317 123703516 + 2 NA Intergenic Intergenic 157999 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 463-210 chr4 60503340 60503707 + 2 NA Intergenic Intergenic -419096 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 234-243 chr3 90032092 90032260 + 2 NA Intergenic Intergenic 924555 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 203-94 chr18 52091087 52091282 + 2 NA Intergenic MLT2F|LTR|ERVL -249013 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 411-92 chr14 75590011 75590332 + 2 NA intron (NM_017791, intron 1 of 9) MSTB2|LTR|ERVL-MaLR -10583 NR_110552 102724153 Hs.615289 NR_110552 ENSG00000224721 LOC102724153 - uncharacterized LOC102724153 ncRNA 300-443 chr7 141400149 141400309 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -151181 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 681-82 chr8 33959100 33959678 + 2 NA Intergenic Intergenic -359283 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 134-15 chr11 6705659 6705786 + 2 NA Intergenic HAL1b|LINE|L1 16157 NR_003945 387751 Hs.494757 NR_003945 ENSG00000254838 GVINP1 GVIN1|GVIN1P|VLIG-1|VLIG1 GTPase, very large interferon inducible pseudogene 1 pseudo 336-223 chr18 14007777 14008050 + 2 NA Intergenic L1ME3D|LINE|L1 -92206 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 334-67 chr10 82550648 82550843 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -317825 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 292-64 chr10 131298597 131298788 + 2 NA intron (NM_174937, intron 3 of 11) AluSx|SINE|Alu 13029 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 221-257 chr5 178427549 178427761 + 2 NA intron (NM_173465, intron 2 of 28) L1MC1|LINE|L1 162738 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 547-151 chr4 12234364 12234733 + 2 NA intron (NR_125910, intron 1 of 3) L1MA4|LINE|L1 11097 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 370-308 chr3 40487672 40487920 + 2 NA exon (NM_001363277, exon 6 of 6) exon (NM_001363277, exon 6 of 6) 10674 NM_001145093 285267 Hs.407159 NM_173656 ENSG00000177873 ZNF619 - zinc finger protein 619 protein-coding 468-186 chr22 28110405 28110763 + 2 NA intron (NM_001145418, intron 6 of 22) intron (NM_001145418, intron 6 of 22) -189972 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 305-204 chr17 73618162 73618335 + 2 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 26197 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 295-458 chr7 154711960 154712158 + 2 NA intron (NR_157196, intron 7 of 25) intron (NR_157196, intron 7 of 25) -216458 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 237-28 chr10 18252465 18252651 + 2 NA intron (NM_201593, intron 2 of 13) L4_A_Mam|LINE|RTE-X -8164 NM_000724 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 432-137 chr2 134629776 134630044 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 89090 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 253-297 chr4 79336172 79336406 + 2 NA Intergenic Intergenic -10228 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 306-114 chr12 94683407 94683637 + 2 NA Intergenic Intergenic -32965 NM_020698 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 306-80 chr11 80262570 80262746 + 2 NA Intergenic Intergenic 500145 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 382-13 chr1 114162203 114162531 + 2 NA Intergenic L1PA15|LINE|L1 -8498 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 431-218 chr5 11949752 11950128 + 2 NA Intergenic MER89-int|LTR|ERV1 -45494 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 286-83 chr12 13834896 13835114 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 145351 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 736-47 chr20 14370501 14370903 + 2 NA intron (NM_001351663, intron 3 of 17) Eulor9C|DNA|DNA -33035 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 353-116 chr12 65733810 65734004 + 2 NA Intergenic AluJb|SINE|Alu -90553 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 331-472 chr6 140624756 140624937 + 2 NA Intergenic L1ME2|LINE|L1 -58968 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 361-248 chr2 222345813 222346098 + 2 NA intron (NR_136642, intron 2 of 3) L1M5|LINE|L1 25294 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 198-143 chr2 189007827 189008010 + 2 NA exon (NM_000090, exon 46 of 51) exon (NM_000090, exon 46 of 51) 12288 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 291-64 chr11 7046330 7046497 + 2 NA intron (NM_176822, intron 4 of 11) L3|LINE|CR1 25944 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 361-329 chr4 126117259 126117492 + 2 NA Intergenic L1MA3|LINE|L1 610116 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 287-214 chr2 183884766 183884971 + 2 NA Intergenic Intergenic -494107 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 358-297 chr3 97569205 97569519 + 2 NA intron (NM_001080448, intron 11 of 17) intron (NM_001080448, intron 11 of 17) 129755 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 364-217 chr2 110911564 110911761 + 2 NA intron (NM_001371254, intron 11 of 18) L1MB7|LINE|L1 179089 NM_001371254 193-112 chr2 116799232 116799423 + 2 NA Intergenic MER4C|LTR|ERV1 -1015364 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 390-393 chr8 116977925 116978190 + 2 NA intron (NM_001172811, intron 2 of 9) intron (NM_001172811, intron 2 of 9) 27082 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 235-27 chr1 244807968 244808151 + 2 NA Intergenic L1MC5a|LINE|L1 -27247 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 338-172 chr14 89070202 89070535 + 2 NA Intergenic Intergenic 245717 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 440-237 chr7 53230569 53230896 + 2 NA Intergenic L1MC5|LINE|L1 195099 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 390-29 chr10 7904220 7904551 + 2 NA intron (NM_031923, intron 2 of 6) L2a|LINE|L2 85880 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 328-384 chr4 21874935 21875129 + 2 NA intron (NM_147182, intron 1 of 8) MIRb|SINE|MIR -21844 NR_002813 359822 Hs.354058 NR_002813 ENSG00000280650 KCNIP4-IT1 NCRNA00099|UM9(5)|UM9-5 KCNIP4 intronic transcript 1 ncRNA 284-420 chr8 133003845 133004043 + 2 NA intron (NM_003235, intron 35 of 47) MIRb|SINE|MIR 42637 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 329-574 chr8 83600414 83600709 + 2 NA Intergenic L1MEc|LINE|L1 196803 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 220-36 chr1 244590378 244590537 + 2 NA intron (NM_001130957, intron 14 of 21) L1MB5|LINE|L1 -62591 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 521-170 chr3 183361719 183362110 + 2 NA intron (NM_015078, intron 3 of 29) Tigger4|DNA|TcMar-Tigger 66355 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 249-10 chr1 65361865 65362056 + 2 NA intron (NM_001256865, intron 2 of 19) L1ME3Cz|LINE|L1 52417 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 288-404 chr7 48363191 48363446 + 2 NA intron (NM_152701, intron 31 of 61) L1M7|LINE|L1 191860 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 232-405 chr9 105847023 105847187 + 2 NA Intergenic L1M6|LINE|L1 152564 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 175-7 chr1 100794335 100794459 + 2 NA Intergenic Intergenic 74655 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 311-347 chr3 97677355 97677553 + 2 NA intron (NM_001080448, intron 14 of 17) AluSq2|SINE|Alu -87067 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 488-71 chr13 96606176 96606538 + 2 NA intron (NM_153456, intron 1 of 1) L1PA16|LINE|L1 179128 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 246-433 chr9 84927188 84927419 + 2 NA intron (NM_001018064, intron 13 of 17) L4_B_Mam|LINE|RTE-X 221402 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 419-151 chr2 140301918 140302228 + 2 NA intron (NM_018557, intron 83 of 90) L2|LINE|L2 284612 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 355-306 chr22 42010745 42010984 + 2 NA intron (NM_152613, intron 1 of 5) L1M4|LINE|L1 12076 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 400-355 chr8 137647573 137647803 + 2 NA Intergenic L1MC5a|LINE|L1 -234100 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 291-451 chr8 87518423 87518607 + 2 NA Intergenic Intergenic 355500 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 456-168 chr2 167556126 167556515 + 2 NA Intergenic Intergenic -262352 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 603-58 chr16 9239379 9239852 + 2 NA Intergenic L1MA4A|LINE|L1 -115973 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 237-147 chr18 13176246 13176415 + 2 NA Intergenic Intergenic -42430 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 443-201 chr3 84839259 84839630 + 2 NA intron (NR_033860, intron 8 of 20) intron (NR_033860, intron 8 of 20) 30131 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 226-228 chr3 94691005 94691227 + 2 NA Intergenic MamRep605|LTR?|LTR? -247147 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 346-510 chr8 137081889 137082105 + 2 NA Intergenic L1ME1|LINE|L1 331591 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 366-68 chr10 126610706 126610919 + 2 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) 59698 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 370-270 chr20 38122240 38122529 + 2 NA Intergenic Intergenic 42886 NM_001323318 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 179-115 chr8 56232329 56232457 + 2 NA Intergenic Intergenic 20604 NM_001011671 79145 Hs.436913 NM_024300 ENSG00000170791 CHCHD7 COX23 coiled-coil-helix-coiled-coil-helix domain containing 7 protein-coding 368-331 chr4 62422912 62423178 + 2 NA Intergenic HERVL-int|LTR|ERVL -261280 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 310-434 chr5 161772800 161773017 + 2 NA Intergenic L1MA9|LINE|L1 -74283 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 574-116 chr4 11050101 11050505 + 2 NA Intergenic Intergenic -318524 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 304-247 chr2 45683229 45683415 + 2 NA intron (NM_005400, intron 1 of 14) MER129|LTR?|LTR? 31647 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 237-395 chr8 131069127 131069312 + 2 NA Intergenic Intergenic -28310 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 438-135 chr2 198694873 198695193 + 2 NA Intergenic Intergenic -319936 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 212-299 chr7 38599225 38599375 + 2 NA intron (NM_001635, intron 1 of 20) Tigger2a|DNA|TcMar-Tigger 32073 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 418-270 chr7 89299000 89299365 + 2 NA intron (NM_181646, intron 2 of 3) L4_B_Mam|LINE|RTE-X -503445 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 129-35 chr2 72331941 72332029 + 2 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -184123 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 254-175 chr19 39100398 39100546 + 2 NA intron (NM_001004318, intron 5 of 12) intron (NM_001004318, intron 5 of 12) 16104 NM_001363687 390928 Hs.448934 NM_001004318 ENSG00000183760 ACP7 PAPL|PAPL1 acid phosphatase 7, tartrate resistant (putative) protein-coding 128-4 chr1 205747825 205747908 + 2 NA intron (NM_022731, intron 1 of 6) intron (NM_022731, intron 1 of 6) 2316 NM_022731 64710 Hs.213061 NM_022731 ENSG00000069275 NUCKS1 JC7|NUCKS nuclear casein kinase and cyclin dependent kinase substrate 1 protein-coding 250-425 chr8 80696694 80696878 + 2 NA intron (NM_001033723, intron 2 of 8) Tigger4b|DNA|TcMar-Tigger 177682 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 330-512 chr8 64715169 64715467 + 2 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 83419 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 144-47 chr2 79189134 79189243 + 2 NA Intergenic Intergenic -29435 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 206-30 chr10 59708611 59708785 + 2 NA intron (NM_001323981, intron 1 of 6) intron (NM_001323981, intron 1 of 6) 1193 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 205-204 chr4 72253561 72253716 + 2 NA Intergenic L1MC4a|LINE|L1 214506 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 460-232 chr5 12122543 12122928 + 2 NA Intergenic Intergenic -218289 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 225-17 chr1 207166781 207166964 + 2 NA Intergenic Intergenic 62639 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 469-93 chr15 67867839 67868196 + 2 NA Intergenic L1M5|LINE|L1 -27972 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 404-124 chr16 79421580 79421906 + 2 NA Intergenic AluJo|SINE|Alu 178994 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 481-114 chr16 73339183 73339628 + 2 NA Intergenic L2b|LINE|L2 -47400 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 428-91 chr17 29441571 29441927 + 2 NA intron (NM_025142, intron 1 of 17) AluSc|SINE|Alu 50824 NM_020791 57551 Hs.597434 NM_020791 ENSG00000160551 TAOK1 KFC-B|MAP3K16|MARKK|PSK-2|PSK2|TAO1|hKFC-B|hTAOK1 TAO kinase 1 protein-coding 390-51 chr10 129570933 129571178 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 103814 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 341-343 chr3 124287640 124287825 + 2 NA intron (NM_001024660, intron 5 of 59) intron (NM_001024660, intron 5 of 59) -86600 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 282-291 chr3 25801365 25801554 + 2 NA Intergenic Intergenic 11369 NM_017897 54995 Hs.55781 NM_017897 ENSG00000151093 OXSM CEM1|FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 331-111 chr12 23115337 23115625 + 2 NA Intergenic Intergenic -60155 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 505-248 chr5 92209312 92209675 + 2 NA Intergenic L1MEf|LINE|L1 -826176 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 276-5 chr1 40026861 40027055 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -13107 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 433-262 chr7 40741814 40742162 + 2 NA intron (NM_024728, intron 13 of 14) L1ME3E|LINE|L1 237951 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 244-10 chr1 75294636 75294806 + 2 NA intron (NM_001320283, intron 3 of 21) L1MA9|LINE|L1 160333 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 155-9 chr1 98196470 98196592 + 2 NA Intergenic Intergenic -14180 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 384-52 chr11 16782901 16783194 + 2 NA intron (NM_001329630, intron 25 of 26) intron (NM_001329630, intron 25 of 26) 44400 NM_014267 10944 Hs.368226 NM_014267 ENSG00000110696 C11orf58 IMAGE145052|SMAP chromosome 11 open reading frame 58 protein-coding 218-27 chr10 62149600 62149759 + 2 NA Intergenic MER53|DNA|hAT 100322 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 344-476 chr8 14967983 14968242 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -114602 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 352-236 chr2 60094354 60094559 + 2 NA Intergenic Intergenic 288580 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 223-100 chr15 62367225 62367403 + 2 NA Intergenic AluSc5|SINE|Alu 24285 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 328-583 chr8 130592603 130592775 + 2 NA Intergenic L2|LINE|L2 -149015 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 368-472 chr8 135295945 135296170 + 2 NA intron (NR_120396, intron 3 of 4) intron (NR_120396, intron 3 of 4) 61926 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 245-190 chr2 78937967 78938144 + 2 NA Intergenic Intergenic -87647 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 460-28 chr10 27424875 27425213 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -10676 NM_001034842 374308 Hs.631832 NM_001034842 ENSG00000182077 PTCHD3 PTR patched domain containing 3 protein-coding 191-8 chr1 90365881 90366022 + 2 NA Intergenic L1MEc|LINE|L1 -291799 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 280-86 chr12 29732147 29732401 + 2 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 51668 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 434-92 chr15 61684757 61685071 + 2 NA Intergenic MIRc|SINE|MIR -45004 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 330-115 chr12 22379364 22379557 + 2 NA Intergenic Intergenic -44746 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 655-111 chr7 51945225 51945756 + 2 NA Intergenic L1PA7|LINE|L1 -552234 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 210-136 chr2 120410031 120410179 + 2 NA Intergenic Intergenic 56244 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 732-24 chr12 48050939 48051428 + 2 NA intron (NR_051992, intron 14 of 18) intron (NR_051992, intron 14 of 18) -46707 NM_001844 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 226-198 chr20 19697173 19697352 + 2 NA intron (NM_020689, intron 14 of 16) intron (NM_020689, intron 14 of 16) -189259 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 114-47 chr5 6561008 6561084 + 2 NA Intergenic L1MB1|LINE|L1 -21090 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 263-249 chr3 10784844 10785034 + 2 NA Intergenic Intergenic -20730 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 616-90 chr2 175316717 175317255 + 2 NA Intergenic MER47B|DNA|TcMar-Tigger -135276 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 268-259 chr3 176757847 176758074 + 2 NA Intergenic Intergenic 59041 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 287-44 chr10 12843495 12843665 + 2 NA Intergenic Intergenic -118227 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 166-57 chr2 184743330 184743480 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 144876 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 335-544 chr8 121072964 121073155 + 2 NA Intergenic MER21C|LTR|ERVL -261013 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 177-79 chr2 140268137 140268262 + 2 NA intron (NM_018557, intron 86 of 90) intron (NM_018557, intron 86 of 90) 318486 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 233-328 chr6 40174726 40174897 + 2 NA Intergenic MIR3|SINE|MIR 181195 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 203-47 chr12 103899162 103899316 + 2 NA intron (NR_027249, intron 4 of 15) intron (NR_027249, intron 4 of 15) 30972 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 458-50 chr12 86302906 86303184 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -45746 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 329-330 chr20 40800140 40800433 + 2 NA Intergenic Intergenic -85663 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 215-134 chr19 37095966 37096152 + 2 NA non-coding (NR_138039, exon 5 of 6) non-coding (NR_138039, exon 5 of 6) 17626 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 327-278 chr2 167227232 167227509 + 2 NA intron (NM_001199144, intron 3 of 8) intron (NM_001199144, intron 3 of 8) 39998 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 888-34 chr5 123054454 123055016 + 2 NA Intergenic Intergenic -18010 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 471-173 chr3 148292338 148292718 + 2 NA intron (NR_146712, intron 2 of 4) A-rich|Low_complexity|Low_complexity 11637 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 370-375 chr5 110182867 110183104 + 2 NA Intergenic L1M4c|LINE|L1 299803 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 337-75 chr10 128877469 128877789 + 2 NA Intergenic Intergenic -35204 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 255-181 chr19 57456674 57456888 + 2 NA promoter-TSS (NM_020633) promoter-TSS (NM_020633) -42 NM_020633 57191 Hs.677423 NM_020633 ENSG00000178201 VN1R1 V1RL1|VNR19I1|ZVNH1|ZVNR1 vomeronasal 1 receptor 1 protein-coding 239-122 chr15 93340866 93341099 + 2 NA Intergenic Intergenic 134916 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 307-506 chr9 12348355 12348611 + 2 NA Intergenic Intergenic -344902 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 483-81 chr16 23160050 23160476 + 2 NA Intergenic LTR19A|LTR|ERV1 -10993 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 570-173 chr6 92485606 92486167 + 2 NA Intergenic L1MA2|LINE|L1 -795458 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 172-27 chr12 10169225 10169352 + 2 NA intron (NM_001172632, intron 1 of 4) intron (NM_001172632, intron 1 of 4) -1311 NM_001079815 120939 Hs.226422 NM_153022 ENSG00000165685 TMEM52B C12orf59 transmembrane protein 52B protein-coding 315-184 chr17 12327130 12327345 + 2 NA Intergenic L1ME3B|LINE|L1 -222731 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 337-344 chr3 31651092 31651347 + 2 NA Intergenic L1MA4A|LINE|L1 -52994 NR_049771 100874206 Hs.662428 NR_049771 ENSG00000232490 OSBPL10-AS1 - OSBPL10 antisense RNA 1 ncRNA 195-127 chr20 52663431 52663565 + 2 NA Intergenic MIR|SINE|MIR 42660 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 452-264 chr8 65243566 65244002 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -63444 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 446-133 chr19 2853123 2853419 + 2 NA exon (NM_001172775, exon 4 of 4) exon (NM_001172775, exon 4 of 4) 11796 NM_152791 148254 Hs.47712 NM_152791 ENSG00000186300 ZNF555 - zinc finger protein 555 protein-coding 310-177 chr16 76017225 76017437 + 2 NA Intergenic Intergenic -260070 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 634-95 chr21 34125458 34125853 + 2 NA intron (NM_032476, intron 2 of 2) intron (NM_032476, intron 2 of 2) 52077 NM_006933 6526 Hs.302742 NM_006933 ENSG00000198743 SLC5A3 BCW2|SMIT|SMIT1|SMIT2 solute carrier family 5 member 3 protein-coding 536-64 chr13 52014674 52014985 + 2 NA intron (NR_036571, intron 1 of 1) MER20|DNA|hAT-Charlie 2431 NM_001004127 440138 Hs.512963 NM_001004127 ENSG00000253710 ALG11 CDG1P|GT8 ALG11 alpha-1,2-mannosyltransferase protein-coding 450-95 chr15 76513935 76514185 + 2 NA intron (NR_148227, intron 23 of 32) L2b|LINE|L2 -72587 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 288-308 chr4 132622799 132623018 + 2 NA intron (NR_126401, intron 1 of 3) MER77|LTR|ERVL 31819 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 278-438 chr8 134878781 134878990 + 2 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 28950 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 426-289 chr8 64948676 64948912 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -150057 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 347-397 chr5 53760126 53760308 + 2 NA Intergenic Intergenic 59465 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 363-57 chr10 66083543 66083820 + 2 NA intron (NM_001127384, intron 14 of 17) intron (NM_001127384, intron 14 of 17) 512256 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 260-73 chr11 14937261 14937500 + 2 NA Intergenic Intergenic 34906 NM_001033953 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 211-85 chr14 63665409 63665562 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -23614 NM_080666 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 628-107 chr5 98471702 98472297 + 2 NA Intergenic L1ME3F|LINE|L1 -296633 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 528-225 chr6 64115430 64115830 + 2 NA intron (NM_001292009, intron 31 of 43) L1M2a|LINE|L1 308794 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 305-411 chr4 168219321 168219498 + 2 NA intron (NM_017631, intron 37 of 37) intron (NM_017631, intron 37 of 37) 99343 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 262-165 chr17 33728191 33728446 + 2 NA intron (NM_001094, intron 1 of 9) LTR16A2|LTR|ERVL -194558 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 420-5 chr1 42007737 42008063 + 2 NA intron (NR_038261, intron 1 of 3) L1M6B|LINE|L1 28034 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 457-230 chr7 38164286 38164723 + 2 NA Intergenic L1MB2|LINE|L1 -13741 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 432-220 chr5 68115320 68115587 + 2 NA Intergenic MIRb|SINE|MIR -74423 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 363-422 chr7 79019395 79019582 + 2 NA intron (NM_001301128, intron 1 of 20) THE1D|LTR|ERVL-MaLR 10500 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 380-284 chr4 99476088 99476423 + 2 NA Intergenic L1PA13|LINE|L1 -34766 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 241-48 chr10 94639923 94640080 + 2 NA Intergenic L1PA6|LINE|L1 -43728 NM_000772 1562 Hs.511872 NM_000772 ENSG00000108242 CYP2C18 CPCI|CYP2C|CYP2C17|P450-6B/29C|P450IIC17 cytochrome P450 family 2 subfamily C member 18 protein-coding 357-161 chr18 1038277 1038496 + 2 NA Intergenic Intergenic -110393 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 225-242 chr4 52476576 52476741 + 2 NA Intergenic L1MB7|LINE|L1 179881 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 229-105 chr13 108199826 108199999 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR 14870 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 319-524 chr8 63827520 63827718 + 2 NA Intergenic Intergenic 58189 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 330-131 chr12 124205766 124205963 + 2 NA intron (NM_001347902, intron 3 of 4) HAL1|LINE|L1 -83300 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 291-456 chr8 89749112 89749299 + 2 NA intron (NR_125822, intron 1 of 4) AluJr|SINE|Alu 8506 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 408-187 chr20 53157843 53158145 + 2 NA intron (NM_173485, intron 1 of 2) L2a|LINE|L2 -27289 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 527-5 chr1 71789615 71790065 + 2 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) 47172 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 472-180 chr2 226438521 226438886 + 2 NA Intergenic Intergenic 220090 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 239-236 chr3 41090035 41090200 + 2 NA Intergenic Intergenic -109388 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 160-42 chr2 127151740 127151839 + 2 NA Intergenic L1M4|LINE|L1 -44635 NM_001320640 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 214-141 chr18 32413582 32413737 + 2 NA intron (NM_001242409, intron 1 of 5) intron (NM_001242409, intron 1 of 5) 57223 NM_001242409 64762 Hs.444314 NM_022751 ENSG00000141441 GAREM1 C18orf11|FAM59A|GAREM|Gm944 GRB2 associated regulator of MAPK1 subtype 1 protein-coding 479-281 chrX 43616606 43616964 + 2 NA Intergenic AluY|SINE|Alu -38122 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 309-386 chr4 54543405 54543669 + 2 NA Intergenic MIRb|SINE|MIR 63594 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 355-417 chr5 138225355 138225620 + 2 NA Intergenic AluJo|SINE|Alu -12164 NM_004661 8697 Hs.73625 NM_004661 ENSG00000094880 CDC23 ANAPC8|APC8|CUT23 cell division cycle 23 protein-coding 992-4 chr11 116069382 116070029 + 2 NA Intergenic X7B_LINE|LINE|CR1 -309505 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 535-100 chr16 82312458 82312950 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -142480 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 314-276 chr2 50933882 50934048 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 98167 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 662-26 chr14 73611233 73611799 + 2 NA 5' UTR (NM_001365789, exon 2 of 4) 5' UTR (NM_001365789, exon 2 of 4) 571 NM_001365789 641372 Hs.122038 NM_001037162 ENSG00000205669 ACOT6 C14orf42|c14_5530 acyl-CoA thioesterase 6 protein-coding 263-51 chr10 62766144 62766281 + 2 NA Intergenic Intergenic -38508 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 502-43 chr11 7587822 7588197 + 2 NA intron (NM_001351860, intron 1 of 21) intron (NM_001351860, intron 1 of 21) -9177 NM_001256568 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 582-92 chr21 28578851 28579341 + 2 NA Intergenic Intergenic 39778 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 241-347 chr6 162139053 162139274 + 2 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -587969 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 273-20 chr1 150033010 150033212 + 2 NA Intergenic L1ME4a|LINE|L1 -22385 NM_020205 56957 Hs.98322 NM_020205 ENSG00000264522 OTUD7B CEZANNE|ZA20D1 OTU deubiquitinase 7B protein-coding 213 chr1 11514024 11514203 + 2 NA intron (NM_020780, intron 3 of 20) intron (NM_020780, intron 3 of 20) 34958 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 140-27 chr15 72171340 72171428 + 2 NA intron (NM_001012642, intron 1 of 11) intron (NM_001012642, intron 1 of 11) 26403 NM_001012642 196996 Hs.596332 NM_001012642 ENSG00000175318 GRAMD2A GRAMD2 GRAM domain containing 2A protein-coding 369-368 chr6 147088008 147088268 + 2 NA intron (NR_034115, intron 4 of 10) intron (NR_034115, intron 4 of 10) -70787 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 342-175 chr16 26337521 26337737 + 2 NA Intergenic MIR|SINE|MIR 312392 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 474-287 chr8 88668257 88668560 + 2 NA Intergenic Intergenic -340925 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 197-89 chr2 31600712 31600820 + 2 NA Intergenic L1MA2|LINE|L1 -19828 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 367-265 chr22 39247086 39247309 + 2 NA Intergenic MIR|SINE|MIR -2215 NM_002608 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 684-4 chr1 64015143 64015804 + 2 NA intron (NM_005012, intron 2 of 8) intron (NM_005012, intron 2 of 8) 96732 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 468-62 chr12 78057208 78057643 + 2 NA intron (NM_001024383, intron 11 of 39) intron (NM_001024383, intron 11 of 39) 226531 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 281-17 chr1 183172696 183172962 + 2 NA Intergenic Intergenic -13435 NM_005562 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 728-77 chr5 133596050 133596713 + 2 NA intron (NM_015082, intron 2 of 15) intron (NM_015082, intron 2 of 15) 16160 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 196-274 chr9 107778932 107779086 + 2 NA Intergenic Intergenic -289240 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 320-505 chr7 22885182 22885431 + 2 NA Intergenic Intergenic 28693 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 314-247 chr18 76244262 76244543 + 2 NA Intergenic L1MD2|LINE|L1 34892 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 342-251 chr2 128917279 128917580 + 2 NA Intergenic L1M4|LINE|L1 52829 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 432-251 chr6 96568766 96569050 + 2 NA intron (NM_020482, intron 2 of 6) L1MA5|LINE|L1 5783 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 182-170 chr8 97569956 97570080 + 2 NA Intergenic Intergenic -74166 NM_001363139 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 372-103 chr12 17910794 17911042 + 2 NA Intergenic L1P4a|LINE|L1 179275 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 344-463 chr7 63086962 63087283 + 2 NA Intergenic Intergenic 216934 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 223-162 chr2 127497505 127497696 + 2 NA intron (NM_017969, intron 6 of 13) intron (NM_017969, intron 6 of 13) 28889 NM_017969 55677 Hs.469879 NM_017969 ENSG00000163166 IWS1 - interacts with SUPT6H, CTD assembly factor 1 protein-coding 369-212 chr2 120928582 120928779 + 2 NA intron (NM_005270, intron 3 of 13) intron (NM_005270, intron 3 of 13) 136399 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 469-54 chr11 77433875 77434252 + 2 NA intron (NM_001128620, intron 1 of 15) L1M4|LINE|L1 40000 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 307-25 chr1 163958438 163958733 + 2 NA Intergenic L1M3b|LINE|L1 -535394 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 539-50 chr12 31707085 31707443 + 2 NA intron (NR_103523, intron 1 of 5) MER112|DNA|hAT-Charlie 21757 NM_001113402 196394 Hs.585084 NM_001113402 ENSG00000151743 AMN1 - antagonist of mitotic exit network 1 homolog protein-coding 408-278 chr5 133479088 133479368 + 2 NA intron (NM_015082, intron 3 of 15) L2a|LINE|L2 -51522 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 230-54 chr11 7403855 7404052 + 2 NA intron (NM_175733, intron 3 of 6) L1ME1|LINE|L1 61882 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 301-353 chr5 33282691 33282926 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 53073 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 311-340 chr3 51133082 51133239 + 2 NA intron (NM_004947, intron 9 of 52) HERVL-int|LTR|ERVL -252131 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 884-34 chr3 188838056 188838643 + 2 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 109290 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 321-205 chr16 6314707 6314992 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 295146 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 439-27 chr10 37292515 37292821 + 2 NA Intergenic Intergenic -16518 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 148-50 chr22 24926840 24926938 + 2 NA TTS (NM_133454) TTS (NM_133454) 19806 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 337-239 chr2 31185554 31185811 + 2 NA intron (NM_001145122, intron 16 of 21) intron (NM_001145122, intron 16 of 21) 31833 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 302-275 chr3 7814218 7814391 + 2 NA Intergenic MIR|SINE|MIR 202003 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 355-99 chr11 92599884 92600074 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 247883 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 226-53 chr11 23687637 23687813 + 2 NA Intergenic Intergenic -268535 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 223-22 chr1 194697658 194697827 + 2 NA Intergenic Intergenic 1390973 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 344-344 chr4 27535601 27535781 + 2 NA Intergenic Intergenic 318212 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 256-341 chr5 147342694 147342886 + 2 NA intron (NM_001112724, intron 5 of 12) MIRb|SINE|MIR 107764 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 546-18 chr10 17827192 17827669 + 2 NA intron (NM_002438, intron 2 of 29) intron (NM_002438, intron 2 of 29) -17677 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 333-608 chr9 102573091 102573324 + 2 NA intron (NR_103830, intron 1 of 4) L1MA6|LINE|L1 53570 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 557-188 chr7 87198082 87198376 + 2 NA intron (NR_138030, intron 2 of 3) intron (NR_138030, intron 2 of 3) 21503 NM_024315 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 468-325 chr8 133732767 133733123 + 2 NA Intergenic Intergenic 44407 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 578-51 chr13 69429965 69430359 + 2 NA Intergenic L1PB1|LINE|L1 207816 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 226-355 chr8 114058346 114058499 + 2 NA Intergenic L1M2|LINE|L1 -621483 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 239-244 chr3 81648720 81648898 + 2 NA intron (NM_000158, intron 5 of 15) intron (NM_000158, intron 5 of 15) 112836 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 278-251 chr20 40189880 40190041 + 2 NA Intergenic Intergenic 185499 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 332-558 chr8 143006974 143007253 + 2 NA intron (NR_026913, intron 1 of 1) L1PA13|LINE|L1 11277 NR_026913 100133669 Hs.195309 NR_026913 LY6E-DT - LY6E divergent transcript ncRNA 207-89 chr14 98144043 98144182 + 2 NA Intergenic MIR3|SINE|MIR -165988 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 379-288 chr6 49216334 49216532 + 2 NA Intergenic Intergenic 246820 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 237-171 chr2 52910436 52910590 + 2 NA Intergenic L1ME1|LINE|L1 -207898 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 484-74 chr15 47801707 47802099 + 2 NA Intergenic Intergenic 44333 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 294-166 chr17 66487790 66487951 + 2 NA intron (NM_002737, intron 2 of 16) L1MA4|LINE|L1 -71016 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 259-445 chrX 151958416 151958649 + 2 NA TTS (NR_029638) TTS (NR_029638) 126 NR_029638 407009 NR_029638 ENSG00000284363 MIR224 MIRN224|miRNA224 microRNA 224 ncRNA 186-42 chr13 45867189 45867328 + 2 NA Intergenic Intergenic -15505 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 389-12 chr1 83657978 83658357 + 2 NA intron (NR_119375, intron 2 of 2) MIRb|SINE|MIR 202379 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 180-11 chr1 181440135 181440232 + 2 NA Intergenic Intergenic -43334 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 516-260 chr8 130606106 130606430 + 2 NA Intergenic Intergenic -162594 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 323-314 chr22_KI270735v1_random 40273 40593 + 2 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 219-104 chr14 72147347 72147499 + 2 NA intron (NM_001370288, intron 2 of 16) MSTD|LTR|ERVL-MaLR 213896 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 642-51 chr2 24527530 24527921 + 2 NA intron (NM_001362952, intron 1 of 23) L1MA9|LINE|L1 35848 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 350-215 chr2 47331249 47331531 + 2 NA intron (NR_110207, intron 1 of 2) MER1A|DNA|hAT-Charlie -3925 NR_001568 618 NR_001568 ENSG00000236824 BCYRN1 BC200|BC200a|LINC00004|NCRNA00004 brain cytoplasmic RNA 1 ncRNA 187-67 chr16 86420548 86420672 + 2 NA Intergenic Intergenic -74931 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 265-174 chr2 37189249 37189405 + 2 NA promoter-TSS (NM_001367551) promoter-TSS (NM_001367551) -657 NM_001367551 391365 Hs.631892 NM_001032377 ENSG00000138068 SULT6B1 ST6B1 sulfotransferase family 6B member 1 protein-coding 169-24 chr12 9795389 9795541 + 2 NA Intergenic L2a|LINE|L2 -4587 NR_159359 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 471-291 chrX 91391628 91392080 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -42985 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 359-78 chr11 10233538 10233868 + 2 NA intron (NM_030962, intron 1 of 39) ERV3-16A3_LTR|LTR|ERVL 60504 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 277-293 chr4 88410925 88411169 + 2 NA intron (NM_001165136, intron 11 of 21) intron (NM_001165136, intron 11 of 21) 32308 NM_017912 55008 Hs.529317 NM_017912 ENSG00000138642 HERC6 - HECT and RLD domain containing E3 ubiquitin protein ligase family member 6 protein-coding 385-94 chr14 40749163 40749430 + 2 NA Intergenic Intergenic -205415 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 322-165 chr15 25281795 25282046 + 2 NA intron (NR_146177, intron 146 of 147) intron (NR_146177, intron 146 of 147) 3577 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 338-467 chr6 34201500 34201820 + 2 NA Intergenic AluJb|SINE|Alu -35213 NM_001319079 3159 Hs.518805 NM_002131 ENSG00000137309 HMGA1 HMG-R|HMGA1A|HMGIY high mobility group AT-hook 1 protein-coding 841-7 chr12 19707740 19708229 + 2 NA Intergenic L1MB7|LINE|L1 267385 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 344-490 chr8 79048702 79048953 + 2 NA Intergenic L1MC3|LINE|L1 211298 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 461-94 chr16 22690231 22690604 + 2 NA Intergenic MIRc|SINE|MIR -123745 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 371-273 chr4 54595922 54596118 + 2 NA Intergenic Intergenic 11111 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 891-19 chr19 57696442 57697012 + 2 NA non-coding (NR_110974, exon 4 of 4) non-coding (NR_110974, exon 4 of 4) 12477 NR_110974 7710 Hs.646378 NM_003444 ENSG00000179909 ZNF154 pHZ-92 zinc finger protein 154 protein-coding 180-53 chr16 6544488 6544618 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -229256 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 250-81 chr11 123770708 123770864 + 2 NA Intergenic Intergenic -16268 NM_001005188 390260 Hs.553759 NM_001005188 ENSG00000221931 OR6X1 OR11-270 olfactory receptor family 6 subfamily X member 1 protein-coding 288-60 chr11 20468987 20469166 + 2 NA intron (NM_005788, intron 13 of 15) intron (NM_005788, intron 13 of 15) 81360 NM_005788 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 317-172 chr15 93411226 93411479 + 2 NA Intergenic Intergenic 205286 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 227-334 chr7 19234145 19234320 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -88811 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 154-5 chr1 102672164 102672299 + 2 NA Intergenic Intergenic 436265 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 158-2 chr1 18508522 18508623 + 2 NA Intergenic L1MEf|LINE|L1 27642 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 249-104 chr13 71075727 71075881 + 2 NA intron (NR_047699, intron 1 of 3) intron (NR_047699, intron 1 of 3) 60663 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 394-317 chr7 153357534 153357898 + 2 NA Intergenic Intergenic 54518 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 282-245 chr2 204398023 204398212 + 2 NA Intergenic Intergenic -147358 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 239-169 chr2 52917988 52918214 + 2 NA Intergenic Intergenic -215486 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 344-479 chr8 33956140 33956389 + 2 NA Intergenic L1PREC2|LINE|L1 -356158 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 422-85 chr14 66943414 66943699 + 2 NA intron (NM_020806, intron 8 of 22) MER61-int|LTR|ERV1 -245884 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 244-129 chr17 55619719 55619923 + 2 NA Intergenic Intergenic 103043 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 321-374 chr3 69599711 69599917 + 2 NA Intergenic L2c|LINE|L2 -139650 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 692-11 chr10 77652265 77652797 + 2 NA Intergenic L1MEd|LINE|L1 -14723 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 500-104 chr17 13530877 13531341 + 2 NA intron (NM_006042, intron 1 of 1) intron (NM_006042, intron 1 of 1) 12537 NR_031679 100302287 NR_031679 ENSG00000221698 MIR548H3 MIR548H-3|MIRN548H3|hsa-mir-548h-3 microRNA 548h-3 ncRNA 201-217 chr6 50970216 50970367 + 2 NA Intergenic Intergenic 151420 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 410-346 chrX 106581664 106582061 + 2 NA Intergenic L1MC1|LINE|L1 -30068 NM_001184782 55086 Hs.274267 NM_018015 ENSG00000147231 RADX CXorf57 RPA1 related single stranded DNA binding protein, X-linked protein-coding 297-516 chr9 111723871 111724128 + 2 NA intron (NM_173521, intron 11 of 25) intron (NM_173521, intron 11 of 25) 35537 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 551-175 chr6 13571705 13572154 + 2 NA Intergenic Intergenic -2600 NM_031244 23408 Hs.567431 NM_012241 ENSG00000124523 SIRT5 SIR2L5 sirtuin 5 protein-coding 357-88 chr12 65737680 65738012 + 2 NA Intergenic Intergenic -86614 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 360-242 chr2 155009439 155009679 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 310864 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 316-262 chr2 62278450 62278641 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 63024 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 261-326 chr5 178814624 178814826 + 2 NA intron (NR_135095, intron 2 of 10) L1MA6|LINE|L1 3710 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 229-356 chr7 39433460 39433631 + 2 NA intron (NM_001370959, intron 7 of 9) intron (NM_001370959, intron 7 of 9) -27199 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 311-547 chr9 91987650 91987849 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -37521 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 420-206 chr4 91956789 91957015 + 2 NA Intergenic Intergenic 320400 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 309-212 chr18 4556496 4556665 + 2 NA Intergenic Intergenic -101273 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 381-287 chr4 167733436 167733735 + 2 NA Intergenic Intergenic -358952 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 184-9 chr1 89082867 89083026 + 2 NA Intergenic L1ME3A|LINE|L1 -17738 NM_002053 2633 Hs.62661 NM_002053 ENSG00000117228 GBP1 - guanylate binding protein 1 protein-coding 531-19 chr10 19774908 19775278 + 2 NA Intergenic Intergenic -41339 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 518-59 chr11 98605625 98606061 + 2 NA Intergenic Intergenic -415106 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 232-290 chr5 15212552 15212776 + 2 NA intron (NR_109944, intron 2 of 2) L1PB1|LINE|L1 53896 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 388-176 chr2 224943445 224943758 + 2 NA intron (NM_014689, intron 1 of 55) intron (NM_014689, intron 1 of 55) 3448 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 274-373 chr8 29507922 29508067 + 2 NA Intergenic Intergenic -157310 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 487-112 chr17 65806011 65806324 + 2 NA intron (NR_126542, intron 1 of 5) L2c|LINE|L2 20284 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 351-79 chr11 112670453 112670631 + 2 NA Intergenic L1PREC2|LINE|L1 -114740 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 239-430 chr8 139513257 139513410 + 2 NA Intergenic L1MDb|LINE|L1 189790 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 381-301 chr5 22674091 22674337 + 2 NA intron (NM_004061, intron 1 of 14) THE1B|LTR|ERVL-MaLR 179130 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 511-211 chr5 120074753 120075089 + 2 NA Intergenic Intergenic -389357 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 422-216 chr4 92948406 92948767 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 644187 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 440-103 chr18 67952381 67952765 + 2 NA Intergenic Intergenic -137751 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 251-364 chr7 30016810 30016999 + 2 NA intron (NR_046478, intron 4 of 4) intron (NR_046478, intron 4 of 4) 9798 NR_046479 55033 Hs.390838 NM_017946 ENSG00000106080 FKBP14 EDSKMH|EDSKSCL2|FKBP22|IPBP12 FKBP prolyl isomerase 14 protein-coding 641-56 chr19 37540834 37541315 + 2 NA 3' UTR (NM_001013659, exon 8 of 8) 3' UTR (NM_001013659, exon 8 of 8) -7875 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 288-465 chr8 138779180 138779329 + 2 NA intron (NM_152888, intron 14 of 64) intron (NM_152888, intron 14 of 64) 134787 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 114-7 chr11 31106588 31106668 + 2 NA intron (NM_001367979, intron 13 of 38) GA-rich|Low_complexity|Low_complexity -113942 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 290-22 chr1 163903944 163904186 + 2 NA Intergenic L1MA4|LINE|L1 -480874 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 374-269 chr4 11994188 11994499 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 211165 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 254-227 chr20 57873700 57873899 + 2 NA Intergenic MIRb|SINE|MIR -130105 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 462-179 chr3 74103798 74104124 + 2 NA Intergenic Intergenic 294717 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 246-409 chr8 109920022 109920235 + 2 NA Intergenic L2a|LINE|L2 55643 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 144-62 chr3 133217528 133217624 + 2 NA intron (NM_001282865, intron 1 of 3) L1MA8|LINE|L1 39545 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 174-40 chr14 37513870 37514011 + 2 NA intron (NM_138731, intron 13 of 13) intron (NM_138731, intron 13 of 13) 81309 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 386-272 chr4 173842181 173842401 + 2 NA Intergenic Intergenic -54982 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 273-236 chr2 144280490 144280684 + 2 NA intron (NM_001354354, intron 1 of 12) L1ME3C|LINE|L1 13906 NM_001006636 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 504-89 chr16 49299391 49299806 + 2 NA Intergenic Intergenic -17760 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 498-157 chr21 39754153 39754466 + 2 NA intron (NM_001080444, intron 2 of 8) L1PB2|LINE|L1 8902 NM_001080444 150084 Hs.422120 NM_001080444 ENSG00000183067 IGSF5 GSF5|JAM4 immunoglobulin superfamily member 5 protein-coding 331-121 chr12 63122311 63122510 + 2 NA Intergenic Intergenic 30400 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 486-274 chr7 36088737 36089094 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -6395 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 154-111 chrX 64138648 64138761 + 2 NA Intergenic MER112|DNA|hAT-Charlie 67004 NM_152424 139285 Hs.314225 NM_152424 ENSG00000184675 AMER1 FAM123B|OSCS|WTX APC membrane recruitment protein 1 protein-coding 679-20 chr11 79308243 79308906 + 2 NA intron (NM_001098816, intron 1 of 33) Charlie4a|DNA|hAT-Charlie 93535 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 346-478 chr8 13451735 13451909 + 2 NA intron (NM_024767, intron 2 of 4) L1MA2|LINE|L1 63029 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 272-329 chr5 17905006 17905193 + 2 NA intron (NR_134286, intron 5 of 7) L1PB1|LINE|L1 97825 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 237-300 chr5 93192235 93192423 + 2 NA Intergenic Intergenic 379014 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 505-32 chr10 81188611 81188982 + 2 NA Intergenic Intergenic 538999 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 365-367 chr7 9280186 9280444 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -353955 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 301-19 chr1 185597030 185597293 + 2 NA intron (NR_110793, intron 2 of 3) intron (NR_110793, intron 2 of 3) 31327 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 421-155 chr2 185639103 185639440 + 2 NA Intergenic MIRb|SINE|MIR 99448 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 529-82 chr16 83294835 83295175 + 2 NA intron (NM_001220489, intron 4 of 12) L1M2|LINE|L1 -213341 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 486-93 chr14 104306308 104306768 + 2 NA Intergenic Intergenic 82954 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 244-7 chr1 58520120 58520355 + 2 NA intron (NM_145243, intron 7 of 8) L1PA16|LINE|L1 26489 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 170-28 chr11 73943144 73943271 + 2 NA Intergenic HERVK14-int|LTR|ERVK -7112 NM_153614 374407 Hs.567888 NM_153614 ENSG00000187726 DNAJB13 CILD34|RSPH16A|TSARG5|TSARG6 DnaJ heat shock protein family (Hsp40) member B13 protein-coding 343-502 chr7 29028325 29028565 + 2 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 48478 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 166-35 chr16 23070266 23070400 + 2 NA intron (NM_020718, intron 15 of 15) intron (NM_020718, intron 15 of 15) 78937 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 247-312 chr5 5033786 5033998 + 2 NA promoter-TSS (NR_026994) promoter-TSS (NR_026994) -467 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 291-146 chr15 36145585 36145799 + 2 NA Intergenic Intergenic 218836 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 272-212 chr2 129741327 129741579 + 2 NA Intergenic MER74A|LTR|ERVL 136038 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 188-25 chr11 57074533 57074698 + 2 NA Intergenic Intergenic 37081 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 207-105 chr17 61096619 61096783 + 2 NA intron (NM_001330413, intron 23 of 25) L1ME3|LINE|L1 271003 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 431-68 chr12 81403121 81403410 + 2 NA intron (NM_001282536, intron 5 of 29) intron (NM_001282536, intron 5 of 29) -33851 NM_001220480 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 192-223 chr9 135025768 135025912 + 2 NA Intergenic L1MD|LINE|L1 -49665 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 428-292 chr8 58464463 58464774 + 2 NA Intergenic Intergenic 35545 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 531-220 chr6 154026782 154027162 + 2 NA intron (NM_001145280, intron 1 of 3) L1M1|LINE|L1 -12130 NM_001008504 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 402-298 chr6 63998376 63998727 + 2 NA intron (NM_001292009, intron 34 of 43) intron (NM_001292009, intron 34 of 43) 191715 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 237-297 chr5 60342733 60342939 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 29827 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 286-396 chr6 128947182 128947429 + 2 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 64164 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 633-79 chr3 63299088 63299561 + 2 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 21016 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 249-13 chr1 85309117 85309326 + 2 NA Intergenic Intergenic -32589 NM_001320715 8915 Hs.193516 NM_003921 ENSG00000142867 BCL10 CARMEN|CIPER|CLAP|IMD37|c-E10|mE10 BCL10 immune signaling adaptor protein-coding 339-61 chr10 44200304 44200641 + 2 NA Intergenic Intergenic -92278 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 332-137 chr13 38801159 38801424 + 2 NA intron (NM_207361, intron 6 of 23) L1M2|LINE|L1 26300 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 235-5 chr1 42018203 42018379 + 2 NA intron (NR_038261, intron 1 of 3) L1ME3A|LINE|L1 17643 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 439-163 chr20 45730342 45730655 + 2 NA Intergenic L1M2c|LINE|L1 8151 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 199-98 chr2 14305239 14305419 + 2 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 95629 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 508-5 chr1 60101804 60102254 + 2 NA Intergenic MIR|SINE|MIR -28259 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 340-195 chr16 71225822 71226055 + 2 NA intron (NM_001198543, intron 1 of 18) L1ME1|LINE|L1 4784 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 585-123 chr5 25561367 25561782 + 2 NA Intergenic Intergenic 370621 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 303-191 chr19 57941842 57942006 + 2 NA exon (NM_005773, exon 3 of 3) exon (NM_005773, exon 3 of 3) 5782 NM_005773 10172 Hs.596242 NM_005773 ENSG00000152454 ZNF256 BMZF-3|BMZF3 zinc finger protein 256 protein-coding 336-189 chr16 9352966 9353278 + 2 NA Intergenic Intergenic -2466 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 393-395 chrX 93179124 93179367 + 2 NA Intergenic LTR19-int|LTR|ERV1 -354342 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 277-20 chr1 152239485 152239649 + 2 NA Intergenic L1M1|LINE|L1 -15371 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 297-101 chr12 23492214 23492411 + 2 NA Intergenic L2c|LINE|L2 92274 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 429-57 chr11 81836671 81836997 + 2 NA Intergenic L1MA3|LINE|L1 54002 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 385 chr1 34438330 34438617 + 2 NA Intergenic Intergenic 231221 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 237-379 chr8 99183974 99184195 + 2 NA intron (NM_017890, intron 16 of 61) L1MB8|LINE|L1 170818 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 562-79 chr17 69574193 69574628 + 2 NA Intergenic L1ME4a|LINE|L1 -19577 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 334-242 chr19 56655300 56655479 + 2 NA non-coding (NR_163262, exon 6 of 6) non-coding (NR_163262, exon 6 of 6) 12230 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 411-8 chr1 87086721 87086963 + 2 NA intron (NM_012262, intron 3 of 6) intron (NM_012262, intron 3 of 6) -42923 NR_026989 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 575-46 chr13 90707575 90708050 + 2 NA Intergenic Intergenic 214524 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 418-187 chr4 91927352 91927651 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 349801 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 240-372 chr6 26645689 26645864 + 2 NA intron (NM_001242799, intron 1 of 2) AluSp|SINE|Alu 13970 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 457-128 chr2 181396481 181396822 + 2 NA intron (NR_130784, intron 4 of 4) intron (NR_130784, intron 4 of 4) -60241 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 390-286 chr5 26915283 26915535 + 2 NA intron (NM_016279, intron 3 of 11) intron (NM_016279, intron 3 of 11) 123177 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 546-60 chr12 128220214 128220641 + 2 NA Intergenic Intergenic -46976 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 241-125 chr15 41558483 41558610 + 2 NA promoter-TSS (NM_006293) promoter-TSS (NM_006293) -666 NM_006293 7301 Hs.381282 NM_006293 ENSG00000092445 TYRO3 BYK|Dtk|Etk-2|RSE|Rek|Sky|Tif TYRO3 protein tyrosine kinase protein-coding 731-47 chr3 156879352 156879894 + 2 NA intron (NM_001004316, intron 3 of 12) THE1B-int|LTR|ERVL-MaLR 53270 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 315-141 chr14 84102005 84102296 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -1169782 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 431-189 chr3 185387535 185387846 + 2 NA intron (NM_004721, intron 1 of 13) L1M2|LINE|L1 24554 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 1093 chr10 130346125 130346801 + 2 NA Intergenic L1MEc|LINE|L1 210054 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 326-2 chr1 8146392 8146572 + 2 NA Intergenic Intergenic -62190 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 347-198 chr2 16349394 16349629 + 2 NA Intergenic Intergenic 299084 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 372-284 chr20 39860276 39860612 + 2 NA Intergenic Intergenic -144017 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 279-13 chr1 89914614 89914825 + 2 NA intron (NM_001134479, intron 2 of 2) intron (NM_001134479, intron 2 of 2) 80247 NR_002830 492303 Hs.550796 NR_002830 GEMIN8P4 - gem nuclear organelle associated protein 8 pseudogene 4 pseudo 248-218 chr20 24079201 24079394 + 2 NA Intergenic Intergenic -90518 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 279-434 chr9 24186484 24186680 + 2 NA Intergenic L1MEg|LINE|L1 -335981 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 213-54 chr11 43105293 43105481 + 2 NA Intergenic L1ME3G|LINE|L1 163982 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 249-315 chr5 4841941 4842182 + 2 NA Intergenic Intergenic 68580 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 236-165 chr2 62710960 62711117 + 2 NA intron (NM_001142615, intron 2 of 22) L2|LINE|L2 4141 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 365-379 chr7 71554432 71554724 + 2 NA intron (NM_022479, intron 5 of 10) LTR81A|LTR|Gypsy -246808 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 403-162 chr2 123972098 123972405 + 2 NA Intergenic L2b|LINE|L2 52923 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 489-234 chr6 161458044 161458375 + 2 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) -12768 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 339-537 chr7 86351675 86351871 + 2 NA Intergenic L1MCb|LINE|L1 -292136 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 296-334 chr4 47426215 47426378 + 2 NA 3' UTR (NM_000812, exon 9 of 9) 3' UTR (NM_000812, exon 9 of 9) 37406 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 316-571 chr8 141982247 141982496 + 2 NA Intergenic Intergenic -193968 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 532-57 chr12 133020163 133020528 + 2 NA 3' UTR (NM_001330513, exon 5 of 5) 3' UTR (NM_001330513, exon 5 of 5) 16877 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 382-236 chr20 21784280 21784615 + 2 NA Intergenic L1MEd|LINE|L1 78783 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 530-281 chrM 8048 8489 + 2 NA promoter-TSS (NR_162149).2 promoter-TSS (NR_162149).2 -754 NR_162149 113219467 NR_162149 MIR12136 - microRNA 12136 ncRNA 151-51 chr22 38483668 38483744 + 2 NA TTS (NM_006855) TTS (NM_006855) 15610 NM_006855 11015 Hs.745072 NM_006855 ENSG00000100196 KDELR3 ERD2L3 KDEL endoplasmic reticulum protein retention receptor 3 protein-coding 329-377 chr3 103886744 103887003 + 2 NA Intergenic Intergenic -362757 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 335-455 chr6 38415748 38415937 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -65754 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 211-154 chr2 171459381 171459555 + 2 NA intron (NM_001164821, intron 8 of 11) L1ME4b|LINE|L1 -24665 NM_024770 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 319-255 chr2 118176054 118176265 + 2 NA Intergenic Intergenic 10227 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 339-562 chr8 53706025 53706211 + 2 NA Intergenic L1M3|LINE|L1 136924 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 319-276 chr2 183274462 183274751 + 2 NA Intergenic L1MD|LINE|L1 150163 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 440-188 chr5 5945493 5945784 + 2 NA Intergenic L1MB8|LINE|L1 391654 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 379-354 chr8 118573769 118574122 + 2 NA intron (NM_001101676, intron 2 of 4) L2a|LINE|L2 -47056 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 229-227 chr20 43169659 43169879 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 20137 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 447-173 chr3 72274622 72274916 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 123512 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 377-186 chr2 6845915 6846207 + 2 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -5597 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 474-200 chr4 35070363 35070720 + 2 NA Intergenic L1MC1|LINE|L1 -800794 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 248-262 chr3 193423280 193423471 + 2 NA intron (NM_032279, intron 25 of 29) L1MA6|LINE|L1 -44622 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 473-186 chr3 191980908 191981217 + 2 NA Intergenic L1M4|LINE|L1 -257568 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 338-505 chr7 62610503 62610678 + 2 NA Intergenic ALR/Alpha|Satellite|centr 693466 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 307-324 chr3 188516129 188516399 + 2 NA intron (NM_001167672, intron 3 of 9) intron (NM_001167672, intron 3 of 9) 52402 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 439-196 chr3 192625441 192625699 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 101971 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 385-237 chr3 23775493 23775772 + 2 NA Intergenic LTR16C|LTR|ERVL -30323 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 324-17 chr1 87849451 87849750 + 2 NA Intergenic Intergenic -477945 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 211-189 chr3 76189992 76190157 + 2 NA Intergenic Intergenic -404525 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 237-281 chr5 5804958 5805186 + 2 NA Intergenic Intergenic 382395 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 222-155 chr18 77437611 77437830 + 2 NA Intergenic Intergenic 187872 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 203-235 chr8 105437553 105437708 + 2 NA intron (NM_001362837, intron 2 of 7) intron (NM_001362837, intron 2 of 7) 118087 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 474-160 chr2 217627296 217627750 + 2 NA intron (NR_026597, intron 1 of 12) Charlie15b|DNA|hAT-Charlie 129070 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 239-29 chr10 29666949 29667135 + 2 NA intron (NM_001323599, intron 2 of 38) L1ME1|LINE|L1 -32071 NM_021738 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 413-21 chr1 177298819 177299108 + 2 NA Intergenic HERV16-int|LTR|ERVL -52623 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 643-29 chr13 22363535 22364089 + 2 NA Intergenic L1PA13|LINE|L1 153527 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 192-96 chr2 32783083 32783248 + 2 NA intron (NM_017735, intron 15 of 19) intron (NM_017735, intron 15 of 19) -42268 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 311-269 chr2 122213643 122213815 + 2 NA Intergenic Intergenic 458078 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 352-217 chr2 9201412 9201748 + 2 NA Intergenic Intergenic -5185 NM_001135191 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 293-53 chr11 21393110 21393300 + 2 NA intron (NM_201551, intron 15 of 18) CR1-16_AMi|LINE|CR1 723619 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 268-136 chr15 95511562 95511787 + 2 NA Intergenic L1ME1|LINE|L1 78581 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 508-89 chr19 29000516 29000923 + 2 NA Intergenic Intergenic -1836 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 162-23 chr11 115799137 115799230 + 2 NA Intergenic Intergenic -38983 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 228-183 chr2 183692521 183692723 + 2 NA Intergenic L1MA2|LINE|L1 568179 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 331-442 chr5 157066761 157066954 + 2 NA Intergenic AluSp|SINE|Alu -7741 NM_001308156 26762 Hs.129711 NM_012206 ENSG00000113249 HAVCR1 CD365|HAVCR|HAVCR-1|KIM-1|KIM1|TIM|TIM-1|TIM1|TIMD-1|TIMD1 hepatitis A virus cellular receptor 1 protein-coding 220-67 chr11 37225252 37225397 + 2 NA Intergenic MER52A|LTR|ERV1 -627045 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 383-416 chr9 96808753 96808970 + 2 NA Intergenic L1M4c|LINE|L1 -30732 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 324-561 chr9 30414736 30415018 + 2 NA Intergenic L1M1|LINE|L1 -6423 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 220-22 chr1 166794817 166794962 + 2 NA Intergenic Intergenic -44586 NM_017542 57645 Hs.432752 NM_017542 ENSG00000143157 POGK BASS2|KRBOX2|LST003 pogo transposable element derived with KRAB domain protein-coding 129-13 chr12 46447071 46447167 + 2 NA intron (NR_125381, intron 2 of 2) Charlie7|DNA|hAT-Charlie 63012 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 197-97 chr2 83145715 83145864 + 2 NA Intergenic Intergenic 288986 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 370-79 chr11 23261935 23262236 + 2 NA Intergenic Intergenic 157105 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 362-123 chr12 80034878 80035087 + 2 NA Intergenic Intergenic -64555 NM_001368062 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 148-72 chr5 129478279 129478385 + 2 NA intron (NM_133638, intron 2 of 22) intron (NM_133638, intron 2 of 22) -17643 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 1013-13 chr22 24740606 24741381 + 2 NA intron (NM_001008496, intron 12 of 20) L1PB1|LINE|L1 -23508 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 458-88 chr15 65466633 65467014 + 2 NA intron (NR_135485, intron 13 of 20) intron (NR_135485, intron 13 of 20) -43876 NM_020962 57722 Hs.458607 NM_020962 ENSG00000103742 IGDCC4 DDM36|NOPE immunoglobulin superfamily DCC subclass member 4 protein-coding 266-118 chr14 81051962 81052221 + 2 NA intron (NM_001142626, intron 1 of 8) L1MA7|LINE|L1 96470 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 343-103 chr12 61088540 61088765 + 2 NA Intergenic L1M1|LINE|L1 1104187 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 223-211 chr3 69737968 69738158 + 2 NA Intergenic Intergenic -1401 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 431-103 chr17 57558958 57559248 + 2 NA intron (NM_001322250, intron 7 of 13) L5|LINE|RTE-X -35506 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 392-226 chr4 41955165 41955473 + 2 NA 3' UTR (NM_018126, exon 7 of 7) 3' UTR (NM_018126, exon 7 of 7) 19890 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 376-188 chr2 85918909 85919260 + 2 NA Intergenic Intergenic 29804 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 387-208 chr20 61678659 61679015 + 2 NA intron (NM_001252339, intron 1 of 14) MLT1C|LTR|ERVL-MaLR 40911 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 231-343 chr8 5518794 5518978 + 2 NA Intergenic L2a|LINE|L2 -523972 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 178-19 chr10 52128115 52128253 + 2 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 185944 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 152-73 chr4 67530143 67530268 + 2 NA intron (NR_155754, intron 5 of 18) L1ME3G|LINE|L1 15298 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 255-199 chr2 79405511 79405709 + 2 NA Intergenic AluSz|SINE|Alu 95234 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 324-222 chr18 7282240 7282500 + 2 NA Intergenic AluSc8|SINE|Alu 51266 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 472-322 chr8 108987327 108987620 + 2 NA Intergenic Intergenic -99155 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 424-107 chr17 76746141 76746473 + 2 NA intron (NM_001353019, intron 8 of 13) Tigger1|DNA|TcMar-Tigger 8806 NM_001353019 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 286-164 chr17 65797644 65797920 + 2 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 28669 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 211-328 chr9 105720552 105720743 + 2 NA intron (NM_018112, intron 2 of 5) intron (NM_018112, intron 2 of 5) 26106 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 408-339 chr8 109868939 109869257 + 2 NA Intergenic MIR|SINE|MIR 106673 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 663-114 chr8 62457762 62458127 + 2 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 209090 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 219-152 chr19 31659883 31660058 + 2 NA Intergenic Intergenic 67689 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 208-252 chr7 145829039 145829209 + 2 NA Intergenic L1MC|LINE|L1 -945147 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 482-261 chr8 15783984 15784409 + 2 NA Intergenic L1MA7|LINE|L1 243933 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 302-476 chr8 138430942 138431185 + 2 NA intron (NM_001362965, intron 1 of 19) MER94|DNA|hAT-Blackjack 66198 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 348-158 chr15 61768401 61768695 + 2 NA Intergenic Intergenic 38630 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 335-302 chr20 45741032 45741296 + 2 NA Intergenic AluJb|SINE|Alu 18817 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 512-145 chr20 18631983 18632378 + 2 NA 3' UTR (NM_001318043, exon 5 of 5) 3' UTR (NM_001318043, exon 5 of 5) 44126 NM_080820 92675 Hs.659442 NM_080820 ENSG00000125821 DTD1 C20orf88|DTD|DUE-B|DUEB|HARS2|pqn-68 D-aminoacyl-tRNA deacylase 1 protein-coding 412-242 chr4 146675870 146676208 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 37146 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 365-275 chr3 191901264 191901573 + 2 NA Intergenic Intergenic -337212 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 335-181 chr16 13655462 13655682 + 2 NA Intergenic L1MC5a|LINE|L1 -264585 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 331-314 chr20 22522848 22523132 + 2 NA Intergenic Intergenic 55652 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 254-356 chr6 132395008 132395203 + 2 NA intron (NM_015529, intron 1 of 11) L1M2|LINE|L1 6370 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 405-178 chr20 12554324 12554638 + 2 NA Intergenic Intergenic 382482 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 363-280 chr3 29174034 29174358 + 2 NA Intergenic Intergenic 106743 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 741-19 chr14 79959037 79959563 + 2 NA Intergenic L1PA11|LINE|L1 -252119 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 340-513 chr7 97594397 97594579 + 2 NA Intergenic L2a|LINE|L2 -137598 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 236-263 chr4 111530386 111530585 + 2 NA Intergenic MIR|SINE|MIR -614969 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 589-156 chr8 83647472 83647859 + 2 NA Intergenic L1ME2|LINE|L1 243907 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 312-69 chr10 133034424 133034584 + 2 NA Intergenic Intergenic 52193 NR_111905 100128127 Hs.694139 NR_111905 ADGRA1-AS1 GPR123-AS1 adhesion G protein-coupled receptor A1 antisense RNA 1 ncRNA 281-36 chr10 30141863 30142081 + 2 NA Intergenic Intergenic -26478 NM_001350021 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 218-275 chr5 112103329 112103494 + 2 NA Intergenic L1MC4|LINE|L1 -57115 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 404-291 chr7 48886892 48887260 + 2 NA Intergenic Intergenic -37471 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 271-187 chr19 28838096 28838283 + 2 NA Intergenic L2c|LINE|L2 -110495 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 242-21 chr1 191690775 191691008 + 2 NA Intergenic Intergenic -462393 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 349-38 chr1 227679063 227679279 + 2 NA non-coding (NR_102302, exon 6 of 6) non-coding (NR_102302, exon 6 of 6) 18536 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 300-328 chr4 89280347 89280638 + 2 NA intron (NM_198281, intron 1 of 1) L2|LINE|L2 27308 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 550-227 chr8 62197847 62198196 + 2 NA Intergenic LOR1a|LTR|ERV1 -50833 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 455-158 chr22 48787074 48787433 + 2 NA Intergenic L1MA7|LINE|L1 6958 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 304-471 chr6 153279381 153279571 + 2 NA Intergenic Intergenic -148194 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 272-144 chr16 71525468 71525678 + 2 NA promoter-TSS (NM_005769) promoter-TSS (NM_005769) -547 NM_005769 10164 Hs.251383 NM_005769 ENSG00000140835 CHST4 GST3|GlcNAc6ST2|HECGLCNAC6ST|LSST carbohydrate sulfotransferase 4 protein-coding 174-83 chr3 1985283 1985414 + 2 NA Intergenic Charlie20a|DNA|hAT-Charlie -113455 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 463-275 chr7 113864598 113864911 + 2 NA Intergenic Intergenic 54255 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 410-22 chr1 232410229 232410467 + 2 NA intron (NM_020808, intron 17 of 20) intron (NM_020808, intron 17 of 20) 105260 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 285-443 chr9 1901200 1901372 + 2 NA Intergenic L1PA16|LINE|L1 -114061 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 193-105 chr2 60381395 60381557 + 2 NA intron (NR_132991, intron 1 of 3) MER77B|LTR|ERVL 1560 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 234-318 chr5 116890366 116890574 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -128261 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 301-133 chr15 68744561 68744753 + 2 NA Intergenic L1ME3G|LINE|L1 57268 NR_036197 100422971 NR_036197 ENSG00000265195 MIR4312 - microRNA 4312 ncRNA 290-485 chr9 81748333 81748513 + 2 NA intron (NR_109772, intron 2 of 3) L1MC4|LINE|L1 58710 NR_109772 101927502 Hs.528628 NR_109772 ENSG00000233926 LOC101927502 - uncharacterized LOC101927502 ncRNA 313-468 chr6 71874790 71875075 + 2 NA Intergenic L1MD2|LINE|L1 -11771 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 415-198 chr4 59172386 59172728 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 158984 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 121-5 chr12 11659657 11659733 + 2 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 9841 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 357-377 chr6 21423800 21424135 + 2 NA Intergenic L1MC5|LINE|L1 87925 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 471-16 chr1 224073521 224073983 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -40359 NR_049764 23219 Hs.64691 NM_015176 ENSG00000143756 FBXO28 CENP-30|Fbx28 F-box protein 28 protein-coding 390-295 chr5 61839595 61839906 + 2 NA Intergenic L1ME1|LINE|L1 -104052 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 394-316 chr7 151764869 151765135 + 2 NA intron (NM_016203, intron 3 of 15) MLT1C|LTR|ERVL-MaLR -28688 NM_001304527 51422 Hs.647072 NM_016203 ENSG00000106617 PRKAG2 AAKG|AAKG2|CMH6|H91620p|WPWS protein kinase AMP-activated non-catalytic subunit gamma 2 protein-coding 699-102 chr8 101798981 101799341 + 2 NA intron (NM_001040628, intron 4 of 7) L1MD1|LINE|L1 -8192 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 568-135 chr3 88448472 88448879 + 2 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 110219 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 438-35 chr10 80368856 80369214 + 2 NA TTS (NM_001270042) TTS (NM_001270042) 12254 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 297-228 chr2 136676233 136676479 + 2 NA Intergenic Intergenic -89189 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 466-173 chr3 73840503 73840867 + 2 NA intron (NR_146637, intron 2 of 3) L1ME3A|LINE|L1 31441 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 270-414 chr8 130797304 130797513 + 2 NA intron (NM_001115, intron 15 of 17) intron (NM_001115, intron 15 of 17) 243501 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 228-343 chr8 110696063 110696234 + 2 NA Intergenic Intergenic 331285 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 232-374 chr8 88476911 88477100 + 2 NA Intergenic L1PA11|LINE|L1 -149522 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 304-470 chr6 140414080 140414251 + 2 NA Intergenic Intergenic 208913 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 220-107 chr14 43186989 43187185 + 2 NA Intergenic MER89-int|LTR|ERV1 1320196 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 552-67 chr14 94939434 94939929 + 2 NA Intergenic Intergenic 169039 NR_144432 108868751 NR_144432 GSC-DT DIGIT GSC divergent transcript ncRNA 368-387 chr6 12847715 12847975 + 2 NA intron (NM_001322308, intron 3 of 13) Tigger15a|DNA|TcMar-Tigger -109511 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 158-66 chr2 227729953 227730073 + 2 NA Intergenic Intergenic -11985 NM_001371413 172-6 chr1 220408303 220408431 + 2 NA Intergenic L1MDa|LINE|L1 -119769 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 124-70 chr7 106483553 106483632 + 2 NA Intergenic Intergenic 177566 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 434-64 chr12 104225575 104225966 + 2 NA intron (NM_001093771, intron 1 of 16) THE1C|LTR|ERVL-MaLR 9991 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 418-22 chr10 19101374 19101636 + 2 NA intron (NM_001142308, intron 4 of 39) (AT)n|Simple_repeat|Simple_repeat 52704 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 253-293 chr4 46517848 46518013 + 2 NA Intergenic Intergenic -127802 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 551-202 chr7 125770547 125770952 + 2 NA Intergenic MER50B|LTR|ERV1 -506458 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 234-108 chr14 86269018 86269171 + 2 NA Intergenic L1ME2|LINE|L1 334416 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 352-323 chr3 78456514 78456836 + 2 NA Intergenic MER20|DNA|hAT-Charlie -407712 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 462-156 chr2 230571046 230571394 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 129309 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 316-193 chr16 13157957 13158174 + 2 NA intron (NM_001145204, intron 2 of 4) MIRc|SINE|MIR 256467 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 156-32 chr14 35658643 35658741 + 2 NA intron (NM_014990, intron 27 of 40) intron (NM_014990, intron 27 of 40) 104239 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 237-377 chr8 84226768 84226958 + 2 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 42197 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 461-59 chr12 26317288 26317569 + 2 NA Intergenic Intergenic 121855 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 172-48 chr18 23382462 23382552 + 2 NA intron (NM_032933, intron 5 of 14) MER104|DNA|TcMar-Tc2 55454 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 159-52 chr21 21037284 21037377 + 2 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 38921 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 312-206 chr18 64466087 64466286 + 2 NA Intergenic Intergenic -206131 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 307-89 chr11 97862730 97862933 + 2 NA Intergenic L1MDa|LINE|L1 -1158118 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 338-181 chr15 45233277 45233485 + 2 NA Intergenic Intergenic -18853 NM_004212 9153 Hs.367833 NM_004212 ENSG00000137860 SLC28A2 CNT2|HCNT2|HsT17153|SPNT1 solute carrier family 28 member 2 protein-coding 530-136 chr2 116532116 116532451 + 2 NA Intergenic Intergenic 1188468 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 235-409 chrX 88104312 88104442 + 2 NA Intergenic Intergenic 586575 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 389-25 chr10 26514274 26514566 + 2 NA intron (NM_019043, intron 8 of 14) intron (NM_019043, intron 8 of 14) 64887 NR_134472 101929117 Hs.127031 NR_134472 LOC101929117 - uncharacterized LOC101929117 ncRNA 611-107 chr4 55236903 55237332 + 2 NA Intergenic L1MA7|LINE|L1 -109125 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 258-278 chr3 193919380 193919562 + 2 NA Intergenic L2a|LINE|L2 74767 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 291-311 chr4 30161698 30161949 + 2 NA Intergenic Intergenic -558546 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 274-161 chr17 34848845 34849102 + 2 NA Intergenic Intergenic 112487 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 324-355 chr3 95682469 95682768 + 2 NA non-coding (NR_077228, exon 1 of 5) non-coding (NR_077228, exon 1 of 5) 575 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 460-47 chr11 55652208 55652485 + 2 NA TTS (NM_001004059) TTS (NM_001004059) 1442 NM_001004059 219431 Hs.553621 NM_001004059 ENSG00000174982 OR4S2 OR11-137|OR4S2P|OST725 olfactory receptor family 4 subfamily S member 2 protein-coding 558-70 chr16 83561633 83562168 + 2 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 53554 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 315-145 chr15 34155290 34155520 + 2 NA intron (NM_024713, intron 2 of 9) HERVIP10F-int|LTR|ERV1 53322 NM_152595 161779 Hs.156317 NM_152595 ENSG00000182405 PGBD4 - piggyBac transposable element derived 4 protein-coding 256-273 chr3 118792486 118792647 + 2 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 18267 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 258-236 chr20 55772919 55773102 + 2 NA Intergenic Intergenic 232509 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 234-398 chr9 11705681 11705886 + 2 NA Intergenic MER41B|LTR|ERV1 -987602 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 377-423 chr9 5408186 5408555 + 2 NA intron (NM_018465, intron 3 of 5) THE1D-int|LTR|ERVL-MaLR 29555 NM_018465 55848 Hs.584242 NM_018465 ENSG00000107020 PLGRKT AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT) plasminogen receptor with a C-terminal lysine protein-coding 207-94 chr15 100027604 100027749 + 2 NA intron (NM_139057, intron 18 of 21) MER58A|DNA|hAT-Charlie 220653 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 305-2 chr1 18463188 18463445 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -17614 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 257-323 chr5 46116961 46117141 + 2 NA Intergenic L1ME3F|LINE|L1 -420671 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 179-94 chr5 51971237 51971382 + 2 NA Intergenic Intergenic -36722 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 576-163 chr8 59223574 59224068 + 2 NA Intergenic Intergenic 104611 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 137-30 chr15 64457616 64457695 + 2 NA Intergenic Intergenic -41765 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 331-79 chr11 7451156 7451457 + 2 NA intron (NR_103855, intron 3 of 4) intron (NR_103855, intron 3 of 4) 14529 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 401-124 chr17 21153180 21153424 + 2 NA intron (NM_015510, intron 1 of 6) L1MC1|LINE|L1 -12885 NM_001330159 25979 Hs.386989 NM_015510 ENSG00000109016 DHRS7B CGI-93|SDR32C1 dehydrogenase/reductase 7B protein-coding 338-398 chr4 180190260 180190442 + 2 NA Intergenic Intergenic 968798 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 669-89 chr5 30372459 30373060 + 2 NA Intergenic Intergenic 492199 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 293-394 chr7 20854017 20854270 + 2 NA intron (NR_126381, intron 1 of 5) intron (NR_126381, intron 1 of 5) 18712 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 365-357 chr6 110002147 110002489 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 24007 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 386-355 chr8 104617505 104617717 + 2 NA Intergenic Intergenic -28587 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 326-562 chr8 139596651 139596827 + 2 NA Intergenic Intergenic 106384 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 631-101 chr5 45959127 45959567 + 2 NA Intergenic ALR/Alpha|Satellite|centr -262967 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 225-184 chr20 61579956 61580143 + 2 NA intron (NM_001252338, intron 1 of 14) intron (NM_001252338, intron 1 of 14) -19712 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 320-134 chr13 48565817 48566038 + 2 NA Intergenic Intergenic 14974 NR_051983 100129597 Hs.175225 NR_051983 ENSG00000233610 LINC00462 - long intergenic non-protein coding RNA 462 ncRNA 221-225 chr4 98676171 98676330 + 2 NA Intergenic Intergenic 17348 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 366-238 chr2 198705681 198705940 + 2 NA Intergenic AluSx4|SINE|Alu -330713 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 304-313 chr21 34291119 34291296 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -72817 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 325-466 chr5 156932974 156933244 + 2 NA intron (NM_001146726, intron 4 of 7) intron (NM_001146726, intron 4 of 7) 30117 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 340-585 chrX 77149488 77149775 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -135099 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 217-154 chr17 71016579 71016748 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger 185516 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 238-260 chr4 42746030 42746241 + 2 NA Intergenic L1MC5|LINE|L1 -89030 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 281-266 chr21 15966279 15966512 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -104093 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 262-4 chr1 33483781 33483980 + 2 NA intron (NM_145238, intron 2 of 7) L1MC1|LINE|L1 11235 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 346-83 chr11 107739151 107739447 + 2 NA Intergenic L1P4a|LINE|L1 -27243 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 386-152 chr19 48036761 48037036 + 2 NA intron (NM_019855, intron 4 of 5) L1M2|LINE|L1 7181 NM_019855 56344 Hs.117694 NM_016367 ENSG00000105507 CABP5 CABP3 calcium binding protein 5 protein-coding 303-357 chr5 57899905 57900095 + 2 NA promoter-TSS (NR_109900) promoter-TSS (NR_109900) -838 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 290-332 chr5 27969629 27969884 + 2 NA Intergenic L1MB7|LINE|L1 317909 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 285-326 chr5 18562293 18562519 + 2 NA Intergenic Intergenic 755132 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 409-168 chr20 11188751 11189055 + 2 NA Intergenic Intergenic 84480 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 863-23 chr2 167319190 167319784 + 2 NA Intergenic Intergenic 132115 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 308-438 chr6 151489366 151489549 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -4560 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 589-131 chr5 130435900 130436352 + 2 NA Intergenic Intergenic 531661 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 310-506 chr8 43795149 43795385 + 2 NA Intergenic ALR/Alpha|Satellite|centr 502825 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 263-284 chr4 46850355 46850556 + 2 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 58790 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 450-333 chrX 100892139 100892440 + 2 NA Intergenic L1MA2|LINE|L1 -17930 NM_013955 27035 Hs.592227 NM_007052 ENSG00000007952 NOX1 GP91-2|MOX1|NOH-1|NOH1 NADPH oxidase 1 protein-coding 306-125 chr13 47695325 47695504 + 2 NA Intergenic L1PA16|LINE|L1 237208 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 195-206 chr5 153561836 153562000 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 69746 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 397-288 chr6 142531994 142532192 + 2 NA intron (NR_027311, intron 2 of 2) L2a|LINE|L2 105743 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 264-422 chr8 103555882 103556096 + 2 NA intron (NM_001348497, intron 1 of 22) L1MA8|LINE|L1 -54079 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 275-339 chr7 86138814 86139026 + 2 NA Intergenic Intergenic -504989 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 261-405 chr9 18257670 18257902 + 2 NA Intergenic L1MB4|LINE|L1 -216367 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 354-133 chr14 50756477 50756716 + 2 NA exon (NM_020921, exon 18 of 31) exon (NM_020921, exon 18 of 31) -65201 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 306-266 chr2 216771202 216771480 + 2 NA Intergenic AluJb|SINE|Alu -75792 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 269-394 chr8 47597900 47598127 + 2 NA intron (NR_104581, intron 7 of 16) intron (NR_104581, intron 7 of 16) -56075 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 385-293 chr5 30235325 30235683 + 2 NA Intergenic MER57-int|LTR|ERV1 354944 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 300-130 chr15 66511176 66511455 + 2 NA intron (NM_001287822, intron 2 of 17) AluJb|SINE|Alu 5989 NM_001287823 55055 Hs.21331 NM_017975 ENSG00000174442 ZWILCH KNTC1AP|hZwilch zwilch kinetochore protein protein-coding 218-240 chr4 60690277 60690456 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -232253 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 360-503 chrX 82842031 82842261 + 2 NA Intergenic Intergenic -666144 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 262-312 chr4 63751672 63751839 + 2 NA Intergenic Intergenic 657695 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 314-624 chrX 80133200 80133445 + 2 NA Intergenic Intergenic 110262 NM_001303475 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 555-189 chr7 94080362 94080759 + 2 NA Intergenic MER68|LTR|ERVL -76205 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 485-178 chr3 34704182 34704597 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 689634 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 294-3 chr1 44472981 44473238 + 2 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) 49108 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 250-383 chr6 156379339 156379517 + 2 NA TTS (NR_145751) TTS (NR_145751) 678 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 417-58 chr12 42049530 42049794 + 2 NA Intergenic Intergenic 95212 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 379-357 chr8 122792156 122792373 + 2 NA intron (NM_001362797, intron 1 of 4) L1MB7|LINE|L1 10609 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 323-472 chr6 140514720 140515034 + 2 NA Intergenic L1M5|LINE|L1 -168937 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 211-155 chr2 172186546 172186709 + 2 NA Intergenic L1M4|LINE|L1 83621 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 329-118 chr12 34549485 34549729 + 2 NA Intergenic ALR/Alpha|Satellite|centr 527111 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 612-5 chr1 154294782 154295217 + 2 NA Intergenic L1M4a1|LINE|L1 22370 NM_001018837 10456 Hs.199625 NM_006118 ENSG00000143575 HAX1 HCLSBP1|HS1BP1|SCN3 HCLS1 associated protein X-1 protein-coding 378-137 chr14 54071118 54071372 + 2 NA Intergenic L1MA1|LINE|L1 -114354 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 347-239 chr2 122040006 122040258 + 2 NA Intergenic Intergenic 284481 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 298-77 chr11 81737236 81737402 + 2 NA Intergenic Intergenic 153517 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 481-194 chr3 34582264 34582587 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 783795 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 430-14 chr1 169258525 169258936 + 2 NA intron (NR_104229, intron 7 of 12) intron (NR_104229, intron 7 of 12) 109067 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 710-76 chr5 36008542 36008955 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -7726 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 322-492 chr7 55961971 55962152 + 2 NA Intergenic LTR71A|LTR|ERV1 -2524 NM_001483 2631 Hs.591069 NM_001483 ENSG00000146729 NIPSNAP2 GBAS nipsnap homolog 2 protein-coding 427-193 chr4 112195988 112196338 + 2 NA TTS (NM_152400) TTS (NM_152400) -35624 NR_136622 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 257-324 chr5 62857892 62858046 + 2 NA Intergenic L1M1|LINE|L1 279150 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 260-217 chr2 125921362 125921558 + 2 NA Intergenic Intergenic 196525 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 308-94 chr11 133106951 133107243 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -163329 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 246-304 chr4 106608903 106609084 + 2 NA Intergenic MER21C|LTR|ERVL 175369 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 618-40 chr16 51553870 51554307 + 2 NA Intergenic Intergenic -208431 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 361-106 chr12 59685646 59685918 + 2 NA intron (NM_001270622, intron 2 of 5) intron (NM_001270622, intron 2 of 5) -3588 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 299-336 chr4 130061886 130062113 + 2 NA Intergenic Intergenic 290380 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 398-334 chr7 114064553 114064894 + 2 NA Intergenic Intergenic -21604 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 304-20 chr1 154618105 154618352 + 2 NA intron (NM_001365045, intron 1 of 14) L1MC|LINE|L1 -9431 NM_001365048 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 333-537 chr7 53488130 53488311 + 2 NA Intergenic L1PB2|LINE|L1 323711 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 353-405 chr5 35504847 35505197 + 2 NA Intergenic L1M4|LINE|L1 -112841 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 321-248 chr18 44055920 44056195 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 475640 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 373-143 chr16 26233910 26234206 + 2 NA Intergenic L1M4|LINE|L1 208821 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 343-344 chr3 86761909 86762233 + 2 NA Intergenic L1P4|LINE|L1 229078 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 272-140 chr16 46468078 46468285 + 2 NA Intergenic Intergenic 100916 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 336-199 chr16 68830354 68830536 + 2 NA intron (NM_001317185, intron 15 of 15) intron (NM_001317185, intron 15 of 15) -13086 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 506-172 chr21 29172920 29173313 + 2 NA intron (NM_001286620, intron 4 of 4) intron (NM_001286620, intron 4 of 4) -20378 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 538-14 chr1 121442593 121443058 + 2 NA Intergenic Intergenic -44920 NR_104189 100873165 Hs.568525 NR_104189 ENSG00000230806 SRGAP2-AS1 - SRGAP2 antisense RNA 1 ncRNA 210-214 chr5 3914397 3914545 + 2 NA Intergenic L3|LINE|CR1 318639 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 207-164 chr20 54720031 54720213 + 2 NA Intergenic L1ME3Cz|LINE|L1 244529 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 362-446 chr8 119314883 119315207 + 2 NA Intergenic L2c|LINE|L2 -10126 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 290-4 chr1 34304674 34304916 + 2 NA Intergenic L1MA10|LINE|L1 127888 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 243-440 chr8 51217148 51217378 + 2 NA Intergenic Intergenic 592182 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 695-63 chr3 7270608 7271211 + 2 NA intron (NM_000844, intron 2 of 9) LTR38B|LTR|ERV1 264375 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 286-382 chr6 28186460 28186652 + 2 NA Intergenic L1M7|LINE|L1 24795 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 532-256 chr7 125763059 125763382 + 2 NA Intergenic LTR69|LTR|ERVL -498929 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 418-269 chr7 78901856 78902119 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -107001 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 307-275 chr20 52913880 52914064 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -58386 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 326-18 chr1 83935488 83935742 + 2 NA intron (NM_001350215, intron 7 of 19) intron (NM_001350215, intron 7 of 19) 63517 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 414-280 chr5 170181577 170181866 + 2 NA Intergenic L1MC4a|LINE|L1 17420 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 561-150 chr4 86092695 86093081 + 2 NA intron (NM_001363657, intron 8 of 13) intron (NM_001363657, intron 8 of 13) -26918 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 374-261 chr3 130544472 130544728 + 2 NA Intergenic L1MA9|LINE|L1 -15734 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 359-395 chr5 72287877 72288134 + 2 NA intron (NM_001286748, intron 4 of 11) intron (NM_001286748, intron 4 of 11) 32235 NM_001286751 23107 Hs.482491 NM_015084 ENSG00000113048 MRPS27 MRP-S27|S27mt mitochondrial ribosomal protein S27 protein-coding 242-42 chr10 75861002 75861169 + 2 NA intron (NM_032024, intron 1 of 5) MIRc|SINE|MIR 78324 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 273-285 chr3 21449173 21449369 + 2 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) 43545 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 377-76 chr11 110988474 110988833 + 2 NA Intergenic Intergenic 108665 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 390-32 chr10 28859516 28859858 + 2 NA intron (NM_001278522, intron 3 of 4) intron (NM_001278522, intron 3 of 4) 13279 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 408-45 chr10 67121387 67121640 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 109247 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 219-308 chr6 40407459 40407633 + 2 NA intron (NM_020737, intron 2 of 2) intron (NM_020737, intron 2 of 2) 29209 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 410-193 chr3 68545886 68546231 + 2 NA TTS (NM_213609) TTS (NM_213609) 45421 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 461-15 chr1 166685873 166686278 + 2 NA Intergenic L1PA13|LINE|L1 82159 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 242-349 chr6 120702115 120702293 + 2 NA Intergenic L1M3|LINE|L1 632276 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 209-237 chr4 131996742 131996873 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 231969 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 364-130 chr14 68160298 68160501 + 2 NA intron (NM_133509, intron 7 of 10) MIR3|SINE|MIR 336807 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 246-435 chr9 89764542 89764716 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 124846 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 494-150 chr20 42290186 42290609 + 2 NA intron (NM_133170, intron 12 of 31) MIR1_Amn|SINE|MIR -395086 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 397-106 chr15 81924009 81924329 + 2 NA Intergenic Intergenic 121849 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 535-115 chr19 28176803 28177177 + 2 NA Intergenic LTR8B|LTR|ERV1 -383050 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 255-364 chr6 131771845 131772047 + 2 NA Intergenic L2a|LINE|L2 -20226 NR_039610 100616455 NR_039610 ENSG00000266807 MIR548H5 - microRNA 548h-5 ncRNA 260-323 chr4 131121944 131122190 + 2 NA Intergenic L1M2|LINE|L1 -642771 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 274-70 chr11 41456895 41457071 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 2653 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 347-558 chr9 108202503 108202711 + 2 NA Intergenic L1MA1|LINE|L1 653379 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 398-375 chr8 139524489 139524830 + 2 NA Intergenic Intergenic 178464 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 145-19 chr12 19972941 19973025 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -41702 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 176-21 chr12 88327811 88327953 + 2 NA Intergenic L1M6|LINE|L1 185575 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 246-240 chr21 24479710 24479911 + 2 NA intron (NR_135520, intron 4 of 5) L1MB1|LINE|L1 51070 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 602-34 chr14 67440796 67441265 + 2 NA TTS (NR_049879) TTS (NR_049879) 900 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 345-201 chr17 34687879 34688209 + 2 NA Intergenic L2c|LINE|L2 107295 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 470-167 chr3 12755960 12756372 + 2 NA intron (NM_001284406, intron 1 of 11) A-rich|Low_complexity|Low_complexity 3093 NM_001284407 55287 Hs.475502 NM_018306 ENSG00000088726 TMEM40 - transmembrane protein 40 protein-coding 319-287 chr20 19472558 19472837 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -188101 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 151-11 chr10 28079720 28079853 + 2 NA intron (NR_134518, intron 11 of 16) intron (NR_134518, intron 11 of 16) -6408 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 291-124 chr14 62680297 62680454 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 365083 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 383-411 chr9 30749198 30749508 + 2 NA Intergenic Intergenic -340899 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 346-260 chr2 147442216 147442423 + 2 NA Intergenic Intergenic -402198 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 622-10 chr10 112221689 112222182 + 2 NA Intergenic L1MC5|LINE|L1 -38170 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 149-59 chr2 198555227 198555348 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -180190 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 122-5 chr10 59036306 59036382 + 2 NA Intergenic L2b|LINE|L2 36826 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 449-5 chr1 75283796 75284175 + 2 NA intron (NM_001320283, intron 3 of 21) L1PB1|LINE|L1 149597 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 195-224 chr7 34228031 34228177 + 2 NA Intergenic Intergenic 322565 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 297-513 chr9 96809475 96809763 + 2 NA Intergenic L1M4c|LINE|L1 -31490 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 283-54 chr10 57236752 57236938 + 2 NA Intergenic Intergenic 67714 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 337-535 chr8 72395449 72395757 + 2 NA Intergenic L1MA10|LINE|L1 -141622 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 277-457 chrX 49705612 49705848 + 2 NA Intergenic Intergenic -9746 NM_003785 8712 Hs.128231 NM_003785 ENSG00000068985 PAGE1 AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1 PAGE family member 1 protein-coding 332-394 chr4 173969224 173969526 + 2 NA Intergenic L1MA9|LINE|L1 72102 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 432-265 chr7 24331476 24331748 + 2 NA Intergenic Intergenic 47422 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 165-106 chr6 17146724 17146806 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie 44507 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 492-203 chr5 20250095 20250486 + 2 NA intron (NM_001291956, intron 2 of 14) AluSc|SINE|Alu -55261 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 340-359 chr3 55727343 55727574 + 2 NA intron (NR_132749, intron 14 of 17) intron (NR_132749, intron 14 of 17) -67989 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 254-389 chr7 109790076 109790225 + 2 NA Intergenic MLT2A1|LTR|ERVL 170063 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 699-14 chr11 23318991 23319435 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR 99977 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 307-341 chr4 79712064 79712288 + 2 NA Intergenic Intergenic -115295 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 374-366 chr7 104396038 104396242 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 67484 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 413-264 chr6 51059873 51060244 + 2 NA Intergenic L2a|LINE|L2 241187 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 387-188 chr2 176211060 176211369 + 2 NA Intergenic MIR|SINE|MIR -22256 NR_033979 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|MIR7704HG|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 331-101 chr11 99038748 99039070 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 17960 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 585-164 chr8 137758510 137758919 + 2 NA Intergenic Intergenic 324831 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 451-124 chr2 226566501 226566760 + 2 NA Intergenic Intergenic 92163 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 292-13 chr1 86921736 86922010 + 2 NA intron (NM_012262, intron 1 of 6) L1MEc|LINE|L1 7238 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 579-157 chr7 64514121 64514593 + 2 NA Intergenic LTR25-int|LTR|ERV1 48714 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 256-454 chr9 84611664 84611859 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -56697 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 416-303 chr7 10211481 10211825 + 2 NA Intergenic MER61D|LTR|ERV1 -491023 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 641-102 chr7 107860497 107860949 + 2 NA Intergenic Intergenic -30384 NM_001289751 1738 Hs.131711 NM_000108 ENSG00000091140 DLD DLDD|DLDH|E3|GCSL|LAD|PHE3 dihydrolipoamide dehydrogenase protein-coding 171-88 chr4 30289148 30289257 + 2 NA Intergenic Intergenic -431167 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 322-138 chr12 133140353 133140668 + 2 NA intron (NM_015394, intron 1 of 4) MIR|SINE|MIR 9883 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 285-35 chr10 44305657 44305911 + 2 NA Intergenic Intergenic 13034 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 242-223 chr21 44674907 44675119 + 2 NA intron (NM_144991, intron 1 of 11) L1MA4A|LINE|L1 7150 NM_181686 353332 Hs.688628 NM_181686 ENSG00000187175 KRTAP12-1 KAP12.1|KRTAP12.1 keratin associated protein 12-1 protein-coding 669-78 chr4 44397377 44398039 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 51101 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 284-368 chr7 8120343 8120567 + 2 NA intron (NR_146928, intron 13 of 14) intron (NR_146928, intron 13 of 14) 141597 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 347-229 chr2 83436869 83437069 + 2 NA Intergenic Intergenic -85845 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 165-28 chr14 29300993 29301104 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -515261 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 322-151 chr14 48555685 48556001 + 2 NA Intergenic L1MB7|LINE|L1 -760829 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 335-406 chr5 3536488 3536794 + 2 NA promoter-TSS (NR_033898) promoter-TSS (NR_033898) -547 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 497-145 chr2 226449280 226449600 + 2 NA Intergenic Intergenic 209353 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 285-153 chr17 61614934 61615087 + 2 NA Intergenic MER66B|LTR|ERV1 -23791 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 494-315 chr9 88855530 88855867 + 2 NA Intergenic L1MDa|LINE|L1 -109793 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 318-525 chr7 141567902 141568125 + 2 NA intron (NM_018238, intron 2 of 15) MIRb|SINE|MIR 16603 NM_001364948 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 301-82 chr12 2652299 2652573 + 2 NA intron (NM_199460, intron 34 of 49).2 intron (NM_199460, intron 34 of 49).2 19784 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 433-175 chr3 97297665 97297920 + 2 NA intron (NM_001080448, intron 5 of 17) AluSc|SINE|Alu -141815 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 237-271 chr4 103331274 103331444 + 2 NA Intergenic Intergenic -93683 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 335-18 chr1 108333823 108334077 + 2 NA Intergenic Intergenic -89869 NM_001143989 148545 Hs.511849 NM_152488 ENSG00000196427 NBPF4 - NBPF member 4 protein-coding 178-34 chr12 41511152 41511290 + 2 NA intron (NM_001164595, intron 5 of 9) intron (NM_001164595, intron 5 of 9) 73482 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 401-174 chr2 172290817 172291042 + 2 NA Intergenic Intergenic -136407 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 549-121 chr2 153776894 153777416 + 2 NA Intergenic Intergenic -94767 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 675-81 chr6 118040760 118041282 + 2 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) -44882 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 398-181 chr2 203638055 203638336 + 2 NA Intergenic Intergenic -68280 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 234-51 chr10 120197638 120197793 + 2 NA Intergenic Intergenic 157508 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 257-308 chr4 156059510 156059731 + 2 NA Intergenic Intergenic -105754 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 346-263 chr2 165078950 165079163 + 2 NA Intergenic Intergenic -123531 NM_001351539 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 245-126 chr14 68109303 68109474 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 285796 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 453-123 chr2 118572332 118572692 + 2 NA Intergenic Intergenic 30454 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 400-90 chr14 52236090 52236317 + 2 NA Intergenic LTR16B2|LTR|ERVL -31495 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 229-119 chr14 83862951 83863094 + 2 NA Intergenic MER74A|LTR|ERVL 1220390 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 306-151 chr14 72340953 72341136 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -175776 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 342-79 chr10 109612050 109612308 + 2 NA Intergenic Intergenic 311067 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 620-126 chr6 153780195 153780605 + 2 NA Intergenic Intergenic -230096 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 225-325 chr7 35377209 35377348 + 2 NA TTS (NR_038864) TTS (NR_038864) 63423 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 676-52 chr19 43884458 43884950 + 2 NA Intergenic L1MEg|LINE|L1 -4568 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 343-566 chr8 137206504 137206692 + 2 NA Intergenic Intergenic 206990 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 389-282 chr5 15845989 15846353 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -89011 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 214-208 chr3 78724645 78724822 + 2 NA intron (NM_002941, intron 5 of 30) intron (NM_002941, intron 5 of 30) 294726 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 360-83 chr12 23476254 23476537 + 2 NA Intergenic L1PA16|LINE|L1 108191 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 352-151 chr14 65762211 65762508 + 2 NA Intergenic MIRb|SINE|MIR 291257 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 270-429 chr9 82312750 82312929 + 2 NA Intergenic L1MA3|LINE|L1 324067 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 236-387 chr9 91704122 91704349 + 2 NA Intergenic L1MA9|LINE|L1 -67890 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 478-178 chr3 31314069 31314392 + 2 NA Intergenic Intergenic -152443 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 461-155 chr20 39593672 39594005 + 2 NA Intergenic MIR|SINE|MIR -369090 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 350-398 chr5 63863725 63863941 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 98459 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 281-276 chr3 753628 753806 + 2 NA intron (NR_110118, intron 2 of 3) L1MA4A|LINE|L1 161612 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 365-86 chr11 135052177 135052439 + 2 NA Intergenic L2|LINE|L2 66956 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 302-273 chr3 5245627 5245867 + 2 NA Intergenic Intergenic 4508 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 378-452 chr9 78053696 78053929 + 2 NA Intergenic LTR16A|LTR|ERVL -22001 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 552-142 chr3 110364478 110364920 + 2 NA Intergenic L2|LINE|L2 705260 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 289-356 chr5 2365638 2365808 + 2 NA Intergenic Intergenic -53522 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 298-505 chr9 102527978 102528240 + 2 NA intron (NR_103830, intron 1 of 4) intron (NR_103830, intron 1 of 4) 8472 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 214-63 chr11 80901791 80901928 + 2 NA Intergenic Intergenic -139056 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 543-171 chr3 130247610 130247989 + 2 NA intron (NR_027898, intron 15 of 22) intron (NR_027898, intron 15 of 22) 34979 NR_027898 646300 Hs.170475 NR_027898 COL6A4P2 COL6A4 collagen type VI alpha 4 pseudogene 2 pseudo 537-249 chr8 74464718 74465052 + 2 NA intron (NM_001362931, intron 5 of 5) A-rich|Low_complexity|Low_complexity -83658 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 366-205 chr2 83863169 83863497 + 2 NA Intergenic L2b|LINE|L2 340519 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 238-42 chr10 58540022 58540187 + 2 NA intron (NM_001080512, intron 1 of 20) L1MB2|LINE|L1 27232 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 359-143 chr14 49810868 49811074 + 2 NA intron (NM_001301732, intron 17 of 31) AluJb|SINE|Alu 41817 NM_004713 9147 Hs.655964 NM_004713 ENSG00000165525 NEMF NY-CO-1|SDCCAG1 nuclear export mediator factor protein-coding 358-113 chr13 105647877 105648136 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -58824 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 409-95 chr15 70241523 70241887 + 2 NA Intergenic L2b|LINE|L2 -143788 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 694-128 chr8 65357049 65357612 + 2 NA Intergenic Intergenic -176990 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 112-51 chr8 87099117 87099204 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 232745 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 200-289 chr9 76883065 76883230 + 2 NA intron (NM_001308048, intron 1 of 17) MER113|DNA|hAT-Charlie 22940 NM_001308048 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 433-287 chr8 125967358 125967638 + 2 NA Intergenic AluJr4|SINE|Alu -16301 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 795-53 chr7 123223288 123223808 + 2 NA Intergenic L1MA3|LINE|L1 -23577 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 334-523 chr8 51351310 51351591 + 2 NA intron (NM_144651, intron 19 of 22) MLT1C|LTR|ERVL-MaLR 457995 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 406-17 chr1 181562937 181563318 + 2 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 79610 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 514-51 chr11 115250510 115250904 + 2 NA intron (NM_001098517, intron 1 of 8) MIR|SINE|MIR -82870 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 236-73 chr11 107302396 107302625 + 2 NA Intergenic L1MB8|LINE|L1 155336 NM_152434 143884 Hs.212140 NM_152434 ENSG00000152404 CWF19L2 - CWF19 like cell cycle control factor 2 protein-coding 146-8 chr1 244675976 244676063 + 2 NA intron (NM_016076, intron 1 of 4) L1MB8|LINE|L1 22893 NM_016076 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 302-487 chr9 93765877 93766125 + 2 NA Intergenic L1MC3|LINE|L1 -53356 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 232-108 chr14_GL000225v1_random 78661 78802 + 2 NA NA Intergenic NA NA 437-285 chr8 132328795 132329075 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 118327 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 379-304 chr6 146091715 146092026 + 2 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 62672 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 308-334 chr4 64312170 64312394 + 2 NA intron (NM_001363796, intron 5 of 11) intron (NM_001363796, intron 5 of 11) 97168 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 277-161 chr18 44455205 44455466 + 2 NA intron (NR_110792, intron 2 of 4) intron (NR_110792, intron 2 of 4) 76362 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 485-50 chr11 115786444 115786766 + 2 NA Intergenic Intergenic -26405 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 321-304 chr2 161773727 161773952 + 2 NA intron (NM_001354453, intron 2 of 24) intron (NM_001354453, intron 2 of 24) 149423 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 466-189 chr4 129199363 129199656 + 2 NA Intergenic L2|LINE|L2 103357 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 208-86 chr16 61472951 61473111 + 2 NA Intergenic L1MA1|LINE|L1 -417265 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 374-319 chr5 114563990 114564208 + 2 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) -11942 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 430-190 chr3 63174095 63174364 + 2 NA Intergenic L1M4c|LINE|L1 71541 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 481-109 chr16 35259563 35259856 + 2 NA Intergenic Intergenic 63950 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 164-91 chr4 116145276 116145369 + 2 NA Intergenic Intergenic -154403 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 191-69 chr16 65181946 65182110 + 2 NA Intergenic Intergenic -5455 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 191 chr1 30071941 30072118 + 2 NA Intergenic (ATA)n|Simple_repeat|Simple_repeat -34417 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 477-212 chr3 167676004 167676325 + 2 NA Intergenic Intergenic -18241 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 476-196 chr4 64508893 64509196 + 2 NA Intergenic L1MC1|LINE|L1 -99584 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 243-64 chr11 27688781 27688976 + 2 NA intron (NR_033315, intron 6 of 6) intron (NR_033315, intron 6 of 6) 10789 NM_170734 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 829-2 chr1 116076452 116077017 + 2 NA Intergenic AluSx|SINE|Alu -35021 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 258-374 chr7 83562516 83562748 + 2 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 78799 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 421-47 chr12 4409818 4410151 + 2 NA Intergenic Intergenic -30272 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 316-304 chr2 206001288 206001493 + 2 NA 3' UTR (NM_017759, exon 11 of 11) 3' UTR (NM_017759, exon 11 of 11) 84784 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 199-209 chr5 156640143 156640311 + 2 NA intron (NM_001128209, intron 5 of 7) MER106A|DNA|hAT-Charlie -210068 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 215-55 chr11 97112122 97112263 + 2 NA Intergenic Intergenic 603767 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 306-338 chr3 191207860 191208127 + 2 NA intron (NM_198184, intron 1 of 4) intron (NM_198184, intron 1 of 4) 8752 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 504-213 chr5 64397207 64397525 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -108649 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 714-2 chr1 37342476 37342997 + 2 NA Intergenic Intergenic 131707 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 618-116 chr7 21115145 21115711 + 2 NA Intergenic Intergenic 279997 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 400-49 chr11 24136002 24136233 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -360936 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 219-50 chr11 74326252 74326424 + 2 NA Intergenic L2b|LINE|L2 -14698 NM_182904 283208 Hs.660541 NM_182904 ENSG00000149380 P4HA3 - prolyl 4-hydroxylase subunit alpha 3 protein-coding 432-163 chr21 29527311 29527660 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 31438 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 681-67 chr5 107361798 107362239 + 2 NA Intergenic Intergenic 308919 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 504-279 chr9 104819887 104820342 + 2 NA intron (NM_005502, intron 20 of 49) intron (NM_005502, intron 20 of 49) 55985 NM_018376 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 239-265 chr3 182393551 182393729 + 2 NA Intergenic MIR|SINE|MIR 92722 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 182-141 chr5 95047512 95047648 + 2 NA intron (NM_024717, intron 1 of 22) intron (NM_024717, intron 1 of 22) 34286 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 496-141 chr2 147215315 147215638 + 2 NA Intergenic MIR|SINE|MIR 628419 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 476-266 chr8 93424530 93424971 + 2 NA intron (NR_033858, intron 7 of 10) intron (NR_033858, intron 7 of 10) -257900 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 335-148 chr13 107479499 107479733 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 51632 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 371-4 chr1 38606091 38606310 + 2 NA Intergenic (GAGACA)n|Simple_repeat|Simple_repeat 131004 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 230-303 chr5 95428478 95428643 + 2 NA intron (NM_152548, intron 5 of 9) intron (NM_152548, intron 5 of 9) 37194 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 212-53 chr10 125677003 125677148 + 2 NA intron (NM_001128202, intron 1 of 3) L1MA3|LINE|L1 6088 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 444-44 chr11 129101942 129102193 + 2 NA intron (NM_001142685, intron 4 of 21) L1MB3|LINE|L1 -77879 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 180-117 chr4 71736397 71736526 + 2 NA Intergenic Intergenic 47618 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 373-416 chr8 92334421 92334656 + 2 NA Intergenic L1PA11|LINE|L1 -231153 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 314-104 chr11 90885573 90885839 + 2 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -16504 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 198-230 chr7 46295885 46296046 + 2 NA Intergenic L1MA9|LINE|L1 -374693 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 396-35 chr1 223373918 223374279 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -9922 NM_017982 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 270-90 chr12 90433234 90433397 + 2 NA Intergenic Intergenic 139997 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 525-271 chr8 131473132 131473513 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -430771 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 204-192 chr3 34114564 34114699 + 2 NA Intergenic L1MA3|LINE|L1 316001 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 311-520 chr8 120217959 120218263 + 2 NA intron (NM_021110, intron 14 of 47) (TA)n|Simple_repeat|Simple_repeat 93009 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 326-300 chr20 54009117 54009438 + 2 NA intron (NM_001366297, intron 4 of 8) L1MD1|LINE|L1 49743 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 373-381 chr7 52311709 52312028 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -723765 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 300-241 chr20 38464405 38464599 + 2 NA Intergenic AluJb|SINE|Alu -8341 NM_001282918 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 308-460 chr7 42657529 42657798 + 2 NA Intergenic L1MEc|LINE|L1 48784 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 281-468 chrX 57014890 57015154 + 2 NA Intergenic L1PB3|LINE|L1 -19481 NM_001010862 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 318-346 chr3 26212415 26212600 + 2 NA Intergenic L1PA15|LINE|L1 -338812 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 139-38 chr18 4059742 4059864 + 2 NA intron (NM_001242761, intron 2 of 11) MER50-int|LTR|ERV1 97450 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 253-399 chr8 4297438 4297609 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 697391 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 320-460 chr5 126165125 126165294 + 2 NA Intergenic L1MDa|LINE|L1 -14368 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 342-406 chr5 81086329 81086580 + 2 NA intron (NM_006909, intron 8 of 26) intron (NM_006909, intron 8 of 26) -125547 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 398-15 chr1 158400499 158400744 + 2 NA Intergenic Intergenic -1155 NM_001004475 128360 Hs.553588 NM_001004475 ENSG00000186306 OR10T2 OR1-3 olfactory receptor family 10 subfamily T member 2 protein-coding 242-297 chr5 40932229 40932394 + 2 NA intron (NM_000587, intron 3 of 17) L1ME4a|LINE|L1 22814 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 518-272 chr7 35421092 35421463 + 2 NA Intergenic Intergenic 107422 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 439-191 chr3 122133297 122133613 + 2 NA Intergenic AluSx1|SINE|Alu -50213 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 483-211 chr5 84933892 84934218 + 2 NA Intergenic AluSz|SINE|Alu -549175 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 397-236 chr4 170965167 170965405 + 2 NA Intergenic Intergenic -75316 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 339-84 chr11 5019161 5019384 + 2 NA Intergenic L1M3a|LINE|L1 20289 NM_001004755 119682 Hs.553559 NM_001004755 ENSG00000176798 OR51L1 OR11-31 olfactory receptor family 51 subfamily L member 1 protein-coding 407-232 chr4 148740822 148741118 + 2 NA Intergenic Intergenic 201408 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 183-111 chr4 171613973 171614120 + 2 NA intron (NR_147157, intron 3 of 4) intron (NR_147157, intron 3 of 4) 24717 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 332-539 chr8 107456369 107456684 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 41392 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 574-117 chr4 13149099 13149480 + 2 NA Intergenic L2a|LINE|L2 335051 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 422-18 chr1 212397673 212398003 + 2 NA intron (NM_001198862, intron 3 of 8) intron (NM_001198862, intron 3 of 8) 17048 NM_018252 55248 Hs.445386 NM_018252 ENSG00000065600 PACC1 C1orf75|PAC|TMEM206 proton activated chloride channel 1 protein-coding 283-427 chr7 134238108 134238322 + 2 NA intron (NM_144648, intron 16 of 19) L1MC5a|LINE|L1 78715 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 294-15 chr1 171388619 171388774 + 2 NA Intergenic Intergenic 49800 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 245-4 chr1 79409522 79409717 + 2 NA Intergenic Intergenic -402889 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 526-182 chr4 78994457 78994831 + 2 NA intron (NR_038342, intron 2 of 5) L1M5|LINE|L1 22896 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 319-584 chrX 63473681 63473919 + 2 NA intron (NR_152612, intron 1 of 2) intron (NR_152612, intron 1 of 2) 87295 NR_152613 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 248-395 chr8 36756623 36756853 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -27636 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 232-390 chr8 135493781 135493938 + 2 NA intron (NM_006558, intron 1 of 8) L1MCc|LINE|L1 36403 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 367-43 chr10 30919041 30919385 + 2 NA intron (NM_182755, intron 3 of 7) intron (NM_182755, intron 3 of 7) 80304 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 276-247 chr2 188783263 188783415 + 2 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 6784 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 157-71 chr2 194774283 194774402 + 2 NA Intergenic L1M4|LINE|L1 43747 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 398-323 chr7 52554047 52554273 + 2 NA Intergenic Intergenic -481473 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 326-180 chr15 94245090 94245307 + 2 NA Intergenic Intergenic -53003 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 311-250 chr2 50642347 50642576 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 53801 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 582-18 chr11 81259193 81259612 + 2 NA Intergenic Intergenic -496599 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 421-243 chr5 83359566 83359831 + 2 NA Intergenic Intergenic -111976 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 510-214 chr4 155043355 155043759 + 2 NA Intergenic HERV16-int|LTR|ERVL -165079 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 173-10 chr10 49729254 49729383 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 32681 NM_001347819 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 303-6 chr1 81679419 81679698 + 2 NA intron (NM_001366008, intron 3 of 26) MIRb|SINE|MIR -20212 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 345-271 chr2 106226797 106226993 + 2 NA Intergenic L1MC2|LINE|L1 -32556 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 242-90 chr13 41758310 41758497 + 2 NA intron (NM_001009814, intron 21 of 25) (AT)n|Simple_repeat|Simple_repeat -190008 NR_049803 100847026 NR_049803 ENSG00000284584 MIR5006 - microRNA 5006 ncRNA 552-77 chr15 94141062 94141416 + 2 NA Intergenic L1ME1|LINE|L1 -33301 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 275-271 chr4 93327520 93327704 + 2 NA intron (NM_001286838, intron 7 of 14) L1PB4|LINE|L1 -501141 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 494-77 chr15 47928102 47928567 + 2 NA Intergenic Intergenic -82098 NR_120336 101928442 Hs.242804 NR_120336 ENSG00000259572 LINC01491 - long intergenic non-protein coding RNA 1491 ncRNA 200-63 chr13 47624772 47624919 + 2 NA Intergenic L2b|LINE|L2 307777 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 344-414 chr6 39070171 39070399 + 2 NA intron (NR_136563, intron 5 of 13) L1ME3C|LINE|L1 -4029 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 241-34 chr10 35789209 35789391 + 2 NA intron (NR_110138, intron 1 of 2) L2|LINE|L2 10998 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 382-141 chr17 33830215 33830507 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -296601 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 190-166 chr7 110011909 110012033 + 2 NA Intergenic Intergenic -51758 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 530-72 chr14 48831735 48832185 + 2 NA Intergenic Intergenic 754420 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 246-308 chr4 178021956 178022177 + 2 NA Intergenic Intergenic -114130 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 353-26 chr1 147355350 147355644 + 2 NA Intergenic Intergenic 112355 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 248-97 chr13 45149079 45149263 + 2 NA intron (NM_004128, intron 2 of 7) AluJr|SINE|Alu 28661 NM_004128 2963 Hs.654582 NM_004128 ENSG00000188342 GTF2F2 BTF4|RAP30|TF2F2|TFIIF general transcription factor IIF subunit 2 protein-coding 255-373 chr6 163753642 163753881 + 2 NA Intergenic Intergenic -82277 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 348-147 chr14 78456609 78456918 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 53044 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 597-85 chr21 23062730 23063229 + 2 NA Intergenic Intergenic -16305 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 199-128 chr2 174656257 174656414 + 2 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) -21730 NM_003387 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 205-177 chr3 24033704 24033859 + 2 NA Intergenic L1M2|LINE|L1 69466 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 357-423 chr7 136735900 136736237 + 2 NA Intergenic L1MC4|LINE|L1 -132584 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 362-43 chr10 5398710 5398916 + 2 NA intron (NM_024803, intron 2 of 3) MER30|DNA|hAT-Charlie 6015 NM_024803 79861 Hs.163079 NM_024803 ENSG00000178462 TUBAL3 - tubulin alpha like 3 protein-coding 439-86 chr14 37677776 37678143 + 2 NA intron (NM_001310135, intron 3 of 32) L1MEc|LINE|L1 82330 NM_001310135 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 204-282 chr8 74463860 74464019 + 2 NA intron (NM_001362931, intron 5 of 5) Mam_R4|LINE|Dong-R4 -84604 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 351-241 chr2 154530833 154531130 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -73543 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 285-24 chr1 244549016 244549213 + 2 NA intron (NM_001130957, intron 8 of 21) ERVL-B4-int|LTR|ERVL 87743 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 402-304 chr6 139110414 139110652 + 2 NA Intergenic Intergenic -24547 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 482-246 chr7 37169264 37169576 + 2 NA intron (NM_001206480, intron 13 of 21) L1PA3|LINE|L1 171624 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 236-210 chr22 34592830 34593051 + 2 NA Intergenic Intergenic 404976 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 243-201 chr2 43405658 43405833 + 2 NA intron (NM_001083953, intron 28 of 37) intron (NM_001083953, intron 28 of 37) 178534 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 742-40 chr2 82856104 82856655 + 2 NA promoter-TSS (NR_033423) promoter-TSS (NR_033423) -424 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 367-225 chr2 153502611 153502882 + 2 NA Intergenic L1PB1|LINE|L1 -23984 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 316-602 chrX 66409684 66409854 + 2 NA Intergenic Intergenic 206261 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 258-309 chr5 14060489 14060737 + 2 NA Intergenic L2a|LINE|L2 -82729 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 471-281 chr9 33127385 33127732 + 2 NA intron (NM_001497, intron 2 of 5) L1ME4c|LINE|L1 18866 NR_162131 113219452 NR_162131 MIR12117 - microRNA 12117 ncRNA 302-457 chr8 99217259 99217498 + 2 NA intron (NM_017890, intron 17 of 61) intron (NM_017890, intron 17 of 61) 204112 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 633-104 chr6 56027012 56027475 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 64419 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 534-137 chr2 205143167 205143554 + 2 NA intron (NM_152526, intron 10 of 21) intron (NM_152526, intron 10 of 21) -539140 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 238-355 chr7 37527672 37527879 + 2 NA Intergenic Intergenic -78449 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 229-380 chr8 47117247 47117436 + 2 NA Intergenic Intergenic -71966 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 455-192 chr4 126976807 126977106 + 2 NA Intergenic Intergenic -656001 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 435-98 chr16 86483386 86483652 + 2 NA intron (NR_033925, intron 1 of 3) intron (NR_033925, intron 1 of 3) 25341 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 496-39 chr10 85832161 85832511 + 2 NA intron (NM_017551, intron 8 of 15) L1MEg|LINE|L1 254605 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 322-66 chr10 76528412 76528648 + 2 NA intron (NM_001305581, intron 6 of 6) L1ME4a|LINE|L1 -359514 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 428-101 chr18 33964454 33964835 + 2 NA intron (NM_001353232, intron 6 of 9) MER5A|DNA|hAT-Charlie 83968 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 199-198 chr5 63131965 63132105 + 2 NA Intergenic Intergenic 553216 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 462-40 chr11 19012993 19013318 + 2 NA Intergenic L1PB1|LINE|L1 46862 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 247-375 chr7 16758807 16759021 + 2 NA intron (NM_014399, intron 1 of 5) intron (NM_014399, intron 1 of 5) 5159 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 347-84 chr11 132015172 132015510 + 2 NA intron (NR_147849, intron 2 of 6) L1MA4A|LINE|L1 104523 NM_001144059 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 394-325 chr8 76158560 76158931 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -247909 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 303-108 chr13 71710882 71711044 + 2 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 156229 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 580-204 chr8 142035478 142035870 + 2 NA Intergenic Intergenic -140665 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 324-397 chr4 79715637 79715850 + 2 NA Intergenic Intergenic -111728 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 381-49 chr10 56824011 56824333 + 2 NA Intergenic L1PB4|LINE|L1 -462899 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 325-170 chr14 67849706 67849886 + 2 NA intron (NM_133509, intron 4 of 10) L1PA15-16|LINE|L1 26204 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 255-138 chr16 9289656 9289856 + 2 NA Intergenic Intergenic -65832 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 550-190 chr5 159798663 159799040 + 2 NA intron (NR_109891, intron 2 of 2) (CCCTTCT)n|Simple_repeat|Simple_repeat 72533 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 130-23 chr14 66820901 66820972 + 2 NA intron (NM_001024218, intron 3 of 21) intron (NM_001024218, intron 3 of 21) 313529 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 344-25 chr1 163747260 163747553 + 2 NA Intergenic Intergenic -324215 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 325-422 chr5 5600605 5600847 + 2 NA Intergenic HERV16-int|LTR|ERVL 178049 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 291-164 chr16 77141974 77142153 + 2 NA Intergenic Intergenic -49127 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 465-198 chr4 38611636 38611979 + 2 NA TTS (NR_026804) TTS (NR_026804) 47804 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 349-204 chr17 8927599 8927808 + 2 NA intron (NM_001142633, intron 1 of 18) intron (NM_001142633, intron 1 of 18) -15186 NM_014308 23533 Hs.278901 NM_014308 ENSG00000141506 PIK3R5 F730038I15Rik|FOAP-2|P101-PI3K|p101 phosphoinositide-3-kinase regulatory subunit 5 protein-coding 333-23 chr1 99084627 99084879 + 2 NA intron (NR_033940, intron 1 of 2) intron (NR_033940, intron 1 of 2) -79892 NM_001037317 163404 Hs.483948 NM_001010861 ENSG00000117598 PLPPR5 LPPR5|PAP2|PAP2D|PRG5 phospholipid phosphatase related 5 protein-coding 339-217 chr17 72766336 72766604 + 2 NA intron (NM_001352692, intron 6 of 9) L2b|LINE|L2 -125998 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 225-83 chr13 38120554 38120746 + 2 NA intron (NR_047500, intron 1 of 5) intron (NR_047500, intron 1 of 5) 22582 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 217-7 chr1 55012474 55012663 + 2 NA 3' UTR (NM_057176, exon 4 of 4) 3' UTR (NM_057176, exon 4 of 4) 13635 NM_057176 7809 Hs.151291 NM_057176 ENSG00000162399 BSND BART|DFNB73 barttin CLCNK type accessory beta subunit protein-coding 525-272 chr8 132582750 132583090 + 2 NA intron (NR_073525, intron 11 of 12) L3|LINE|CR1 -21441 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 226-237 chr3 150197131 150197289 + 2 NA Intergenic LTR34|LTR|ERV1 -41309 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 335-122 chr12 24491343 24491598 + 2 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 71021 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 687-99 chr5 173392768 173393179 + 2 NA Intergenic L1MC5a|LINE|L1 45518 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 288-272 chr3 105490833 105491010 + 2 NA intron (NM_001243280, intron 1 of 14) THE1C-int|LTR|ERVL-MaLR 124012 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 312-364 chr4 35428877 35429065 + 2 NA Intergenic Intergenic 814968 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 281-343 chr5 4188077 4188252 + 2 NA Intergenic L2c|LINE|L2 -585317 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 250-233 chr2 217697487 217697667 + 2 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 59016 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 342-453 chr6 50024079 50024270 + 2 NA Intergenic L1M4|LINE|L1 -2180 NM_001037497 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 251-86 chr14 31485974 31486132 + 2 NA intron (NM_001197184, intron 1 of 1) Mam_R4|LINE|Dong-R4 1892 NR_036675 2856 Hs.727479 NM_001197184 ENSG00000214943 GPR33 - G protein-coupled receptor 33 (gene/pseudogene) protein-coding 289-397 chr5 157935232 157935465 + 2 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat -76203 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 289-239 chr2 115641364 115641595 + 2 NA intron (NM_001321912, intron 6 of 25) L2a|LINE|L2 297664 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 492-64 chr12 82576953 82577335 + 2 NA Intergenic Intergenic -109762 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 385-44 chr11 9035022 9035281 + 2 NA intron (NM_001367977, intron 16 of 22) intron (NM_001367977, intron 16 of 22) -31150 NM_020645 56675 Hs.523467 NM_020645 ENSG00000175352 NRIP3 C11orf14|NY-SAR-105 nuclear receptor interacting protein 3 protein-coding 286-69 chr11 54837785 54837962 + 2 NA Intergenic Intergenic 131041 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 173-42 chr15 61963859 61964024 + 2 NA exon (NM_017684, exon 30 of 83) exon (NM_017684, exon 30 of 83) 96506 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 208-157 chr3 2649876 2650046 + 2 NA intron (NM_175607, intron 4 of 24) AluSz|SINE|Alu -242254 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 207-229 chr4 170174464 170174619 + 2 NA Intergenic L1MA10|LINE|L1 -52050 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 258-386 chr8 82175197 82175403 + 2 NA Intergenic L2c|LINE|L2 -333014 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 468-262 chr5 125931829 125932181 + 2 NA Intergenic L1MEf|LINE|L1 -247572 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 363-297 chr3 118736865 118737162 + 2 NA intron (NR_135547, intron 1 of 3) ERVL-E-int|LTR|ERVL 73820 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 194-35 chr11 134110169 134110339 + 2 NA intron (NM_001205329, intron 1 of 7) L1ME1|LINE|L1 41109 NR_145790 109623486 NR_145790 SNORD153 - small nucleolar RNA, C/D box 153 snoRNA 330-380 chr4 72047775 72048053 + 2 NA intron (NM_053036, intron 1 of 3) LTR79|LTR|ERVL 8782 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 339-388 chr3 177489777 177490061 + 2 NA intron (NR_047568, intron 1 of 3) L1MA10|LINE|L1 47998 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 280-150 chr16 60388689 60388919 + 2 NA Intergenic Intergenic -29011 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 317-87 chr11 79621037 79621294 + 2 NA Intergenic Intergenic -180135 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 489-82 chr14 86933161 86933529 + 2 NA Intergenic Intergenic 27567 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 307-37 chr10 11228160 11228369 + 2 NA intron (NM_001025076, intron 3 of 13) MIR|SINE|MIR 63234 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 500-246 chr6 74422073 74422540 + 2 NA intron (NR_110856, intron 2 of 3) L1MA2|LINE|L1 352855 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 167-66 chr2 184128883 184128976 + 2 NA Intergenic Intergenic -250046 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 214-137 chr18 2409445 2409637 + 2 NA Intergenic Intergenic 161964 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 402-64 chr12 52469793 52470018 + 2 NA intron (NM_173086, intron 6 of 8) intron (NM_173086, intron 6 of 8) 3900 NM_173086 286887 Hs.709234 NM_173086 ENSG00000170465 KRT6C K6E|KRT6E|PPKNEFD keratin 6C protein-coding 282-395 chr6 35669501 35669726 + 2 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) -4824 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 327-20 chr1 162460134 162460372 + 2 NA Intergenic L1ME5|LINE|L1 -36921 NM_001184763 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 330-498 chr7 114170258 114170476 + 2 NA intron (NR_033766, intron 1 of 19) Tigger1|DNA|TcMar-Tigger 84040 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 422-152 chr2 106751936 106752334 + 2 NA Intergenic L1MC3|LINE|L1 133893 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 313-197 chr17 20204838 20205112 + 2 NA exon (NM_152904, exon 4 of 8) exon (NM_152904, exon 4 of 8) 48903 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 364-414 chr7 53830740 53831005 + 2 NA Intergenic L1M5|LINE|L1 -18941 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 304-26 chr1 175618017 175618206 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 125484 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 175-48 chr14 46860713 46860822 + 2 NA intron (NM_001113498, intron 14 of 16) intron (NM_001113498, intron 14 of 16) -208986 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 467-204 chr4 66207334 66207655 + 2 NA Intergenic L1MB8|LINE|L1 -69330 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 181-20 chr10 78332450 78332602 + 2 NA Intergenic Intergenic 65184 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 282-262 chr20 32191580 32191822 + 2 NA TTS (NM_002657) TTS (NM_002657) -1341 NR_002781 128854 Hs.647447 NR_002781 ENSG00000235217 TSPY26P TSPYL3|bA392M18.1 testis specific protein Y-linked 26, pseudogene pseudo 340-150 chr14 61405654 61405863 + 2 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 84315 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 333-337 chr22 47977580 47977875 + 2 NA Intergenic L1ME3A|LINE|L1 -296637 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 313-346 chr3 70585988 70586293 + 2 NA Intergenic L1ME4b|LINE|L1 -273502 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 337-62 chr10 81950070 81950240 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 72468 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 179-89 chr4 184729989 184730161 + 2 NA intron (NR_104593, intron 2 of 11) intron (NR_104593, intron 2 of 11) 4021 NR_104593 79682 Hs.575032 NM_024629 ENSG00000151725 CENPU CENP50|CENPU50|KLIP1|MLF1IP|PBIP1 centromere protein U protein-coding 398-167 chr2 100220106 100220332 + 2 NA intron (NR_103730, intron 1 of 2) AluSz6|SINE|Alu 11965 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 503-274 chr8 13996507 13996899 + 2 NA Intergenic Intergenic 367013 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 323-519 chr7 132531985 132532191 + 2 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) 44382 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 277-101 chr13 58594450 58594635 + 2 NA Intergenic Intergenic -361425 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 301-67 chr11 71062190 71062455 + 2 NA intron (NM_012309, intron 8 of 24) intron (NM_012309, intron 8 of 24) 162474 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 196-97 chr16 82576073 82576234 + 2 NA Intergenic L3|LINE|CR1 -50816 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 851-2 chr1 44117847 44118445 + 2 NA promoter-TSS (NM_173484) promoter-TSS (NM_173484) -675 NM_173484 128209 Hs.567674 NM_173484 ENSG00000171872 KLF17 ZNF393|Zfp393 Kruppel like factor 17 protein-coding 323-513 chr7 99805100 99805322 + 2 NA Intergenic L1MB3|LINE|L1 -21027 NM_001202855 1576 Hs.728751 NM_017460 ENSG00000160868 CYP3A4 CP33|CP34|CYP3A|CYP3A3|CYPIIIA3|CYPIIIA4|HLP|NF-25|P450C3|P450PCN1 cytochrome P450 family 3 subfamily A member 4 protein-coding 364-471 chr9 69695537 69695786 + 2 NA Intergenic L1MA8|LINE|L1 -23290 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 149-20 chr12 4669534 4669626 + 2 NA intron (NM_005002, intron 7 of 10) intron (NM_005002, intron 7 of 10) 20466 NM_005002 4704 Hs.75227 NM_005002 ENSG00000139180 NDUFA9 CC6|CI-39k|CI39k|COQ11|MC1DN26|NDUFS2L|SDR22E1 NADH:ubiquinone oxidoreductase subunit A9 protein-coding 341-74 chr10 129980313 129980483 + 2 NA Intergenic Intergenic -16124 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 411-182 chr3 74384391 74384704 + 2 NA intron (NM_020872, intron 4 of 21) intron (NM_020872, intron 4 of 21) 136593 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 209-220 chr4 37794844 37795036 + 2 NA Intergenic Intergenic -31746 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 353-21 chr1 106820530 106820765 + 2 NA non-coding (NR_147165, exon 2 of 3) non-coding (NR_147165, exon 2 of 3) 2408 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 252-314 chr5 5564975 5565218 + 2 NA Intergenic Intergenic 142419 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 279-27 chr10 4857863 4858115 + 2 NA Intergenic L1M3|LINE|L1 31782 NM_001040177 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 334-258 chr2 51928968 51929255 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -441537 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 337-384 chr4 30857160 30857403 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 136912 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 122-32 chr3 64821170 64821257 + 2 NA intron (NR_038264, intron 3 of 5) intron (NR_038264, intron 3 of 5) -133213 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 404-191 chr20 8153602 8153857 + 2 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 21463 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 218-32 chr10 92220883 92221048 + 2 NA intron (NM_001178137, intron 2 of 9) intron (NM_001178137, intron 2 of 9) 22314 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 251-108 chr15 54746194 54746411 + 2 NA Intergenic L1MA6|LINE|L1 -310445 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 239-210 chr20 46494890 46495061 + 2 NA Intergenic Intergenic 18597 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 676-106 chr7 104215889 104216496 + 2 NA Intergenic AluYa5|SINE|Alu -8145 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 415-311 chrX 56470254 56470612 + 2 NA Intergenic L2a|LINE|L2 -93160 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 456-251 chr5 79262601 79262994 + 2 NA intron (NM_152405, intron 1 of 10) intron (NM_152405, intron 1 of 10) 26666 NM_152405 133746 Hs.482605 NM_152405 ENSG00000152409 JMY WHAMM2|WHDC1L3 junction mediating and regulatory protein, p53 cofactor protein-coding 618-122 chr7 145959006 145959468 + 2 NA Intergenic Intergenic -815034 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 268-215 chr2 170069968 170070224 + 2 NA intron (NM_172070, intron 35 of 38) L1M2|LINE|L1 -108051 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 247-115 chr14 61312320 61312509 + 2 NA Intergenic L1ME4a|LINE|L1 -9029 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 325-262 chr2 53361242 53361557 + 2 NA Intergenic L1M4|LINE|L1 -406384 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 540-219 chr8 142906523 142906900 + 2 NA Intergenic Intergenic 11132 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 338-384 chr4 66208895 66209098 + 2 NA Intergenic L1MB8|LINE|L1 -67828 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 455-268 chr8 51118186 51118572 + 2 NA Intergenic Intergenic 691066 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 216-14 chr1 105024256 105024393 + 2 NA Intergenic Intergenic 594611 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 561-175 chr6 66338677 66339144 + 2 NA Intergenic Intergenic 551031 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 307-96 chr12 489735 490032 + 2 NA intron (NM_173593, intron 1 of 19) L1MCa|LINE|L1 29944 NM_173593 283358 Hs.504416 NM_173593 ENSG00000139044 B4GALNT3 - beta-1,4-N-acetyl-galactosaminyltransferase 3 protein-coding 357-369 chr5 162591065 162591353 + 2 NA Intergenic L1MD|LINE|L1 523567 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 361-372 chr5 135243153 135243393 + 2 NA intron (NR_037895, intron 2 of 3) MIRb|SINE|MIR 4904 NR_037895 340073 Hs.434422 NR_037895 ENSG00000249647 C5orf66-AS2 - C5orf66 antisense RNA 2 ncRNA 481-73 chr12 102424326 102424707 + 2 NA intron (NM_000618, intron 2 of 3) intron (NM_000618, intron 2 of 3) 54034 NM_001111284 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 364-103 chr12 28898304 28898533 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -250860 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 365-342 chr6 39676047 39676322 + 2 NA intron (NM_001289020, intron 3 of 21) L1MEd|LINE|L1 49224 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 457-212 chr5 166210990 166211400 + 2 NA Intergenic Intergenic 715175 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 366-202 chr2 80638412 80638716 + 2 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 325185 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 482-210 chr5 136330214 136330614 + 2 NA intron (NM_020389, intron 2 of 11) intron (NM_020389, intron 2 of 11) -28558 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 237-183 chr2 96452152 96452364 + 2 NA Intergenic Intergenic 53099 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 188-186 chr6 148603448 148603593 + 2 NA Intergenic L1ME1|LINE|L1 94369 NM_001346509 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 474-288 chr8 89600680 89600977 + 2 NA Intergenic (TATACA)n|Simple_repeat|Simple_repeat 156883 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 508-206 chr6 46507964 46508367 + 2 NA intron (NR_125837, intron 1 of 2) MIR|SINE|MIR -16098 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 373-337 chr5 124993372 124993691 + 2 NA Intergenic Intergenic -43300 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 280-400 chr8 57833243 57833484 + 2 NA Intergenic L1M4a2|LINE|L1 87214 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 309-538 chr8 72378070 72378283 + 2 NA Intergenic L1PA15-16|LINE|L1 -126542 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 346-294 chr22 44789706 44789905 + 2 NA intron (NM_181335, intron 2 of 11) L1M5|LINE|L1 37247 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 709-70 chr4 91770508 91771061 + 2 NA Intergenic MER83B-int|LTR|ERV1 506518 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 304-465 chr6 79340337 79340580 + 2 NA Intergenic Intergenic -27074 NR_130915 80078 NR_130915 ENSG00000286042 LCAL1 onco-lncRNA-27 lung cancer associated lncRNA 1 ncRNA 333-324 chr21 34714342 34714550 + 2 NA intron (NM_001317009, intron 6 of 6) AluSz|SINE|Alu 22736 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 400-238 chr4 12522977 12523328 + 2 NA Intergenic MLT2B3|LTR|ERVL 299701 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 660-23 chr13 20292786 20293132 + 2 NA Intergenic L1ME3G|LINE|L1 -60564 NM_001110221 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 255-194 chr2 60032138 60032289 + 2 NA Intergenic L1MEc|LINE|L1 350823 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 313-125 chr13 78153191 78153403 + 2 NA intron (NR_047001, intron 1 of 5) L1PA16|LINE|L1 98442 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 358-482 chr8 101944666 101944897 + 2 NA intron (NM_001040624, intron 3 of 7) LTR33|LTR|ERVL -39651 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 326-81 chr10 106892451 106892770 + 2 NA intron (NM_001206569, intron 2 of 25) (ATTT)n|Simple_repeat|Simple_repeat 272096 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 303-441 chr8 23833996 23834232 + 2 NA Intergenic Intergenic 20692 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 157-91 chr4 66778062 66778213 + 2 NA Intergenic Intergenic 501313 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 288-221 chr20 6419909 6420181 + 2 NA Intergenic L1ME3Cz|LINE|L1 -6687 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 471-147 chr20 19358060 19358495 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -73681 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 425-297 chr8 54449156 54449520 + 2 NA Intergenic AluSz|SINE|Alu -8597 NM_022454 64321 Hs.98367 NM_022454 ENSG00000164736 SOX17 VUR3 SRY-box transcription factor 17 protein-coding 279-315 chr5 24707354 24707587 + 2 NA Intergenic Intergenic -62492 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 324-547 chr8 126001300 126001615 + 2 NA Intergenic L1ME3|LINE|L1 -50260 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 240-395 chr7 42427261 42427409 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -190126 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 309-205 chr17 58917913 58918111 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 162143 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 388-300 chr6 39983215 39983530 + 2 NA Intergenic Intergenic -48910 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 231-178 chr2 139493795 139493978 + 2 NA Intergenic Intergenic 596562 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 392-234 chr4 92053749 92054083 + 2 NA Intergenic L1MA1|LINE|L1 223386 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 331-347 chr3 61068621 61068881 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 182701 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 744-22 chr13 86431085 86431606 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -480575 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 329-408 chr4 61186800 61186988 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -14336 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 315-424 chr6 120221888 120222106 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 206818 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 258-206 chr2 156392319 156392473 + 2 NA Intergenic Intergenic -43156 NM_001083112 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 336-229 chr18 61725885 61726203 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -22132 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 298-393 chr6 40489209 40489440 + 2 NA intron (NM_020737, intron 1 of 2) MIR3|SINE|MIR 98040 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 648-128 chr6 156303363 156303932 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -75103 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 505-195 chr3 87140638 87140969 + 2 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 51523 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 553-18 chr10 53710434 53710814 + 2 NA Intergenic L1ME3A|LINE|L1 -775606 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 352-225 chr2 34782749 34783014 + 2 NA Intergenic Intergenic 105324 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 269-249 chr3 41145026 41145201 + 2 NA Intergenic Intergenic -54392 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 366-214 chr2 119853481 119853805 + 2 NA intron (NM_002830, intron 2 of 26) L1MDa|LINE|L1 93721 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 460-256 chr6 40236860 40237247 + 2 NA Intergenic L1PA14|LINE|L1 118953 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 305-236 chr2 20021221 20021494 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -8689 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 214-236 chr4 61443161 61443368 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 241092 NM_001371342 446-323 chr9 10144491 10144842 + 2 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 345274 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 261-40 chr10 63210410 63210647 + 2 NA intron (NM_001322258, intron 7 of 24) intron (NM_001322258, intron 7 of 24) 58695 NR_134512 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 348-232 chr2 109069178 109069509 + 2 NA Intergenic Intergenic -59862 NM_001099289 344558 Hs.171244 NM_001099289 ENSG00000172985 SH3RF3 POSH2|SH3MD4 SH3 domain containing ring finger 3 protein-coding 400-70 chr12 74208879 74209199 + 2 NA intron (NR_038300, intron 3 of 6) intron (NR_038300, intron 3 of 6) 83592 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 251-46 chr10 129837599 129837815 + 2 NA 3' UTR (NM_001005463, exon 16 of 16) 3' UTR (NM_001005463, exon 16 of 16) 5667 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 408-20 chr1 152390793 152391054 + 2 NA Intergenic L1PB1|LINE|L1 23340 NM_016190 49860 Hs.242057 NM_016190 ENSG00000143536 CRNN C1orf10|DRC1|PDRC1|SEP53 cornulin protein-coding 323-3 chr1 34695122 34695413 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -25573 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 255-385 chr7 49507671 49507897 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -265854 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 360-120 chr14 62779090 62779305 + 2 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 266261 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 180-113 chr4 45096201 45096342 + 2 NA Intergenic MIR|SINE|MIR -369637 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 617-65 chr2 121002643 121003101 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 210591 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 215-82 chr14 47810439 47810640 + 2 NA Intergenic L1MA3|LINE|L1 -15525 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 596-138 chr5 155498508 155498999 + 2 NA Intergenic Intergenic 484998 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 175-62 chr17 54709287 54709411 + 2 NA Intergenic L1M5|LINE|L1 -191342 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 346-446 chr6 150476425 150476666 + 2 NA Intergenic L1PB4|LINE|L1 107533 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 370-344 chr4 60103560 60103858 + 2 NA Intergenic Intergenic -818910 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 403-206 chr3 180861522 180861906 + 2 NA intron (NR_109986, intron 1 of 13) L1PA16|LINE|L1 8464 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 345-7 chr1 34191089 34191376 + 2 NA intron (NM_001134734, intron 1 of 6) MLT1H|LTR|ERVL-MaLR 14325 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 245-350 chr8 100896571 100896760 + 2 NA Intergenic L1MB7|LINE|L1 53906 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 332-356 chr3 180236883 180237112 + 2 NA Intergenic Intergenic -177176 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 315-48 chr10 36192680 36192922 + 2 NA Intergenic L1MC1|LINE|L1 414499 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 291-490 chr9 72642730 72642939 + 2 NA intron (NM_138691, intron 4 of 23) L1ME1|LINE|L1 121033 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 402-308 chr6 164848570 164848874 + 2 NA Intergenic Intergenic -26659 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 549-97 chr19 40539291 40539612 + 2 NA intron (NM_025213, intron 3 of 9) MIR|SINE|MIR 8960 NM_025213 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 129-26 chr18 2275770 2275848 + 2 NA Intergenic Intergenic 295696 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 582-91 chr21 18520276 18520688 + 2 NA Intergenic Intergenic -116697 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 387-241 chr3 191202021 191202347 + 2 NA intron (NM_198184, intron 1 of 4) intron (NM_198184, intron 1 of 4) 2943 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 304-70 chr11 6537534 6537765 + 2 NA intron (NM_144666, intron 14 of 42) L2a|LINE|L2 40353 NM_144666 144132 Hs.720080 NM_144666 ENSG00000179532 DNHD1 C11orf47|CCDC35|DHCD1|DNHD1L dynein heavy chain domain 1 protein-coding 325-9 chr1 63570668 63570911 + 2 NA intron (NM_032437, intron 12 of 13) intron (NM_032437, intron 12 of 13) 21809 NR_002771 79469 Hs.659291 NR_002771 DLEU2L BCMSUNL deleted in lymphocytic leukemia 2 like ncRNA 310-78 chr11 40599986 40600161 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -306943 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 368-284 chr3 21900485 21900718 + 2 NA Intergenic Intergenic -56538 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 299-122 chr13 85533278 85533468 + 2 NA intron (NR_046989, intron 2 of 3) intron (NR_046989, intron 2 of 3) 169770 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 370-326 chr4 17293858 17294173 + 2 NA Intergenic Intergenic 26867 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 373-317 chr5 34996262 34996594 + 2 NA Intergenic L2|LINE|L2 51521 NM_001306173 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 371-66 chr11 32668335 32668682 + 2 NA intron (NM_001008391, intron 9 of 17) intron (NM_001008391, intron 9 of 17) 84677 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 274-390 chr8 90178320 90178575 + 2 NA Intergenic Intergenic -43041 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 159-30 chr14 82987770 82987884 + 2 NA Intergenic Intergenic 345195 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 224-140 chr2 57211926 57212087 + 2 NA Intergenic MIR3|SINE|MIR -695645 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 392-39 chr11 57362963 57363341 + 2 NA intron (NM_002559, intron 8 of 11) intron (NM_002559, intron 8 of 11) 17998 NM_006093 10394 Hs.251386 NM_006093 ENSG00000156575 PRG3 MBP2|MBPH proteoglycan 3, pro eosinophil major basic protein 2 protein-coding 777-35 chr2 227963489 227964056 + 2 NA Intergenic Intergenic 92141 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 375-344 chr5 163625567 163625791 + 2 NA Intergenic Intergenic 120060 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 437-294 chr9 31917590 31918004 + 2 NA Intergenic Intergenic -466806 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 543-19 chr1 208862396 208862699 + 2 NA Intergenic L1PB2|LINE|L1 -109907 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 254-209 chr2 207042417 207042620 + 2 NA Intergenic Intergenic 67555 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 238-324 chr6 66686049 66686248 + 2 NA Intergenic MER57A1|LTR|ERV1 898269 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 248-161 chr19 34614699 34614923 + 2 NA intron (NR_027620, intron 1 of 3) L1MA5|LINE|L1 -20226 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 574-175 chr8 14867631 14868052 + 2 NA intron (NM_139167, intron 1 of 7) L1PA13|LINE|L1 -14331 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 205-269 chr8 57026235 57026427 + 2 NA Intergenic Intergenic -32464 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 310-349 chr3 151272255 151272425 + 2 NA intron (NM_014879, intron 1 of 2) intron (NM_014879, intron 1 of 2) 6202 NM_014879 9934 Hs.2465 NM_014879 ENSG00000174944 P2RY14 BPR105|GPR105|P2Y14 purinergic receptor P2Y14 protein-coding 412-289 chr6 147494051 147494355 + 2 NA Intergenic L2a|LINE|L2 -14487 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 165-77 chr3 50082394 50082507 + 2 NA Intergenic LTR32|LTR|ERVL -6469 NR_036627 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 228-27 chr1 239591401 239591565 + 2 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -37590 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 366-325 chr4 117260920 117261216 + 2 NA Intergenic MER65-int|LTR|ERV1 99571 NR_147151 105377389 Hs.129401 NR_147151 ENSG00000224932 LINC02262 - long intergenic non-protein coding RNA 2262 ncRNA 400-144 chr18 76215570 76215809 + 2 NA non-coding (NR_146507, exon 4 of 4) non-coding (NR_146507, exon 4 of 4) 6179 NR_146507 105372207 Hs.303880 NR_146507 LINC01893 - long intergenic non-protein coding RNA 1893 ncRNA 456-250 chr5 57860524 57860850 + 2 NA Intergenic Intergenic 38475 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 281-11 chr1 104941440 104941663 + 2 NA Intergenic Intergenic 677384 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 245-199 chr2 123229505 123229665 + 2 NA Intergenic L1PBa|LINE|L1 -156104 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 325-187 chr15 101711178 101711425 + 2 NA intron (NM_152334, intron 5 of 18) intron (NM_152334, intron 5 of 18) 13172 NM_152334 123283 Hs.657163 NM_152334 ENSG00000185418 TARSL2 - threonyl-tRNA synthetase like 2 protein-coding 273-102 chr12 38248626 38248833 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -68045 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 312-12 chr1 78665107 78665410 + 2 NA Intergenic Intergenic 15427 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 198-100 chr18 42550274 42550383 + 2 NA intron (NR_046174, intron 6 of 9) L1MCb|LINE|L1 363660 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 224-211 chr3 133802926 133803088 + 2 NA intron (NM_021203, intron 1 of 7) intron (NM_021203, intron 1 of 7) -2808 NR_163491 58477 Hs.12152 NM_021203 ENSG00000144867 SRPRB APMCF1|SR-beta SRP receptor subunit beta protein-coding 648-150 chr9 24672258 24672680 + 2 NA Intergenic MIRb|SINE|MIR -126572 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 126-35 chr2 23513279 23513349 + 2 NA intron (NM_052920, intron 2 of 13) intron (NM_052920, intron 2 of 13) 128135 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 550-39 chr10 110229738 110230097 + 2 NA intron (NM_001008541, intron 2 of 4) MIR3|SINE|MIR 3921 NM_005962 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 509-159 chr3 171846389 171846784 + 2 NA intron (NM_001164436, intron 1 of 4) intron (NM_001164436, intron 1 of 4) 3237 NM_001164436 389177 Hs.642307 NM_001164436 ENSG00000186329 TMEM212 - transmembrane protein 212 protein-coding 432-264 chr7 15793212 15793596 + 2 NA Intergenic Intergenic 105026 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 295-141 chr14 85111229 85111412 + 2 NA Intergenic MER33|DNA|hAT-Charlie -160612 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 332-354 chr3 173432020 173432290 + 2 NA intron (NM_001365932, intron 1 of 5) L1MC1|LINE|L1 34411 NM_001365931 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 626-31 chr12 18066022 18066529 + 2 NA Intergenic Intergenic 23918 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 502-138 chr2 66975537 66975839 + 2 NA Intergenic L1MB5|LINE|L1 -53198 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 249-380 chr7 48385871 48386037 + 2 NA intron (NM_152701, intron 35 of 61) L1PA13|LINE|L1 214496 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 306-103 chr12 52513288 52513489 + 2 NA Intergenic LTR53-int|LTR|ERVL 7006 NM_000424 3852 Hs.433845 NM_000424 ENSG00000186081 KRT5 CK5|DDD|DDD1|EBS2|K5|KRT5A keratin 5 protein-coding 346-437 chr6 117818003 117818290 + 2 NA Intergenic L1ME2|LINE|L1 -89118 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 388-309 chr6 79772576 79772868 + 2 NA Intergenic Intergenic 39524 NR_131786 89758 Hs.288213 NM_001243308 LINC01621 C6orf7 long intergenic non-protein coding RNA 1621 ncRNA 249-186 chr2 32974210 32974431 + 2 NA intron (NM_206943, intron 2 of 33) L1MA1|LINE|L1 27367 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 309-120 chr12 120912074 120912232 + 2 NA Intergenic AluSx|SINE|Alu 7458 NR_131215 105500240 Hs.742757 NR_131215 XLOC_009911 - uncharacterized LOC105500240 ncRNA 374-385 chr8 78845102 78845460 + 2 NA Intergenic MIR3|SINE|MIR 7752 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 298-338 chr4 111696706 111696951 + 2 NA Intergenic Intergenic -448626 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 184-6 chr1 55386587 55386769 + 2 NA Intergenic Intergenic 161037 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 421-247 chr5 129063177 129063472 + 2 NA Intergenic Intergenic -31425 NM_016048 51015 Hs.483296 NM_016048 ENSG00000066583 ISOC1 CGI-111 isochorismatase domain containing 1 protein-coding 229-261 chr3 145002887 145003035 + 2 NA Intergenic Intergenic 1029880 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 119-43 chr3 5629455 5629539 + 2 NA Intergenic L1M5|LINE|L1 -379242 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 258-365 chr7 41434931 41435076 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -258916 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 350-62 chr10 115914332 115914648 + 2 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 280299 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 601-40 chr14 57733885 57734312 + 2 NA intron (NR_159373, intron 1 of 10) L3|LINE|CR1 130901 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 389-275 chr4 152192932 152193155 + 2 NA Intergenic L1ME4c|LINE|L1 92225 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 584-163 chr7 70720101 70720553 + 2 NA intron (NM_015570, intron 6 of 18) intron (NM_015570, intron 6 of 18) -411817 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 286-38 chr10 32678669 32678947 + 2 NA intron (NM_001321115, intron 22 of 43) L1M2|LINE|L1 222664 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 546-148 chr3 68808367 68808719 + 2 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 124004 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 388-174 chr2 205792508 205792782 + 2 NA intron (NM_201266, intron 16 of 16) intron (NM_201266, intron 16 of 16) 110144 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 352-568 chr9 117793272 117793511 + 2 NA Intergenic Intergenic 88988 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 795-31 chr2 122807543 122808058 + 2 NA Intergenic L1ME4a|LINE|L1 265681 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 324-563 chr9 69237645 69237823 + 2 NA intron (NM_001369870, intron 15 of 23) intron (NM_001369870, intron 15 of 23) 32579 NM_001369875 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 296-421 chr6 154088858 154089123 + 2 NA promoter-TSS (NM_001285528) promoter-TSS (NM_001285528) -772 NM_001285528 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 288-466 chr9 16997180 16997455 + 2 NA Intergenic LTR8B|LTR|ERV1 -126647 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 241-235 chr3 70013079 70013258 + 2 NA intron (NR_110000, intron 2 of 3) (TGA)n|Simple_repeat|Simple_repeat 13424 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 402-33 chr10 65078978 65079238 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -154590 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 319-312 chr22 34693735 34693967 + 2 NA Intergenic MIR3|SINE|MIR 304065 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 342-506 chr8 43509846 43510143 + 2 NA Intergenic Intergenic 217552 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 635-73 chr4 30380619 30381074 + 2 NA Intergenic Intergenic -339523 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 345-5 chr1 30296738 30297006 + 2 NA Intergenic MER41C|LTR|ERV1 -259260 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 375-109 chr13 21760805 21761147 + 2 NA Intergenic Intergenic 89903 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 227-128 chr16 68550077 68550252 + 2 NA intron (NR_130976, intron 2 of 4) MER33|DNA|hAT-Charlie 10873 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 345-72 chr10 85537789 85537979 + 2 NA Intergenic Intergenic -39847 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 469-265 chr7 53671781 53672099 + 2 NA intron (NR_038371, intron 5 of 5) MSTC|LTR|ERVL-MaLR 139991 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 213-135 chr2 49289732 49289886 + 2 NA Intergenic Intergenic -135282 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 219-372 chr8 135817005 135817209 + 2 NA Intergenic MLT2B1|LTR|ERVL 359651 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 235-102 chr14 52918277 52918473 + 2 NA intron (NM_006832, intron 3 of 14) intron (NM_006832, intron 3 of 14) 32675 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 385-6 chr1 106247867 106248206 + 2 NA Intergenic L2a|LINE|L2 -219783 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 445-76 chr14 87653416 87653697 + 2 NA intron (NR_146551, intron 1 of 2) MER70A|LTR|ERVL 1738 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 418-193 chr4 98025203 98025586 + 2 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 118082 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 333-120 chr12 115017183 115017407 + 2 NA Intergenic Intergenic -333120 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 386-289 chr5 62161888 62162088 + 2 NA Intergenic MER52A|LTR|ERV1 -144174 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 297-23 chr1 110757608 110757824 + 2 NA Intergenic Intergenic -82776 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 444-240 chr7 43038987 43039269 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -73519 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 188-215 chr9 28521445 28521565 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 197800 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 622-33 chr14 94619835 94620293 + 2 NA intron (NM_001085, intron 3 of 4) L2a|LINE|L2 7673 NM_001085 12 Hs.534293 NM_001085 ENSG00000196136 SERPINA3 AACT|ACT|GIG24|GIG25 serpin family A member 3 protein-coding 294-84 chr12 47355604 47355784 + 2 NA Intergenic MER33|DNA|hAT-Charlie 8575 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 363-425 chr7 108864748 108865027 + 2 NA Intergenic L2a|LINE|L2 19700 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 155-53 chr2 104747175 104747288 + 2 NA intron (NR_038231, intron 3 of 3) intron (NR_038231, intron 3 of 3) 10488 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 233-301 chr5 59493861 59494041 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 92547 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 391-300 chr5 161026242 161026478 + 2 NA Intergenic Intergenic -87734 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 243-407 chr7 8385679 8385888 + 2 NA Intergenic Intergenic -47826 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 322-466 chr6 106719654 106719822 + 2 NA intron (NR_033557, intron 6 of 6) AluSz6|SINE|Alu 24253 NR_149100 105377926 Hs.635821 NR_149100 ENSG00000229654 LINC02526 - long intergenic non-protein coding RNA 2526 ncRNA 259-106 chr14 26042119 26042296 + 2 NA Intergenic Intergenic 511223 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 232-76 chr12 26509436 26509632 + 2 NA intron (NM_002223, intron 37 of 56) intron (NM_002223, intron 37 of 56) 313961 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 554-29 chr10 64814862 64815219 + 2 NA Intergenic Intergenic -10488 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 279-105 chr14 62416532 62416734 + 2 NA Intergenic L1MD2|LINE|L1 -276660 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 318-479 chr6 68511889 68512143 + 2 NA Intergenic Intergenic 122308 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 166-44 chr2 22263444 22263583 + 2 NA Intergenic L1PB1|LINE|L1 -272966 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 481-25 chr10 34898765 34899123 + 2 NA Intergenic AluJr|SINE|Alu 83176 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 287-102 chr11 122570879 122571121 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -84722 NM_032873 84959 Hs.444075 NM_032873 ENSG00000154127 UBASH3B STS-1|STS1|TULA-2|TULA2|p70 ubiquitin associated and SH3 domain containing B protein-coding 451-207 chr7 3017008 3017330 + 2 NA intron (NM_001324281, intron 1 of 25) intron (NM_001324281, intron 1 of 25) 26698 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 409-158 chr2 193038570 193038829 + 2 NA Intergenic Intergenic 288854 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 214-5 chr1 34080941 34081060 + 2 NA intron (NM_052896, intron 2 of 69) L1MEj|LINE|L1 84274 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 354-368 chr5 34985408 34985612 + 2 NA Intergenic L1MB4|LINE|L1 55917 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 386-269 chr4 158038018 158038225 + 2 NA Intergenic AluSx3|SINE|Alu -132631 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 354-22 chr1 162925139 162925452 + 2 NA Intergenic Intergenic -56480 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 134-20 chr12 8715030 8715139 + 2 NA intron (NR_147950, intron 2 of 8) intron (NR_147950, intron 2 of 8) 17093 NM_001297776 57494 Hs.504670 NM_020734 ENSG00000166532 RIMKLB FAM80B|NAAGS|NAAGS-I ribosomal modification protein rimK like family member B protein-coding 211-131 chr19 56721280 56721404 + 2 NA Intergenic L1MA4|LINE|L1 -43980 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 255-278 chr3 183310103 183310277 + 2 NA intron (NM_015078, intron 9 of 29) AluJr|SINE|Alu 56937 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 407-348 chr9 119776041 119776332 + 2 NA Intergenic Intergenic -158874 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 391-346 chr8 65774239 65774620 + 2 NA intron (NM_001242318, intron 3 of 12) intron (NM_001242318, intron 3 of 12) 14628 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 301-318 chr4 66969609 66969844 + 2 NA Intergenic Intergenic 452274 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 238-75 chr11 108753065 108753289 + 2 NA intron (NM_004398, intron 13 of 17) intron (NM_004398, intron 13 of 17) 88108 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 308-343 chr4 75393574 75393840 + 2 NA Intergenic Intergenic 39631 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 647-83 chr5 66295243 66295737 + 2 NA Intergenic Intergenic -86044 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 215-80 chr14 46815742 46815890 + 2 NA Intergenic L2a|LINE|L2 -164035 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 216-39 chr10 74867133 74867287 + 2 NA intron (NM_001370144, intron 3 of 15) LTR54|LTR|ERV1 40610 NM_001370144 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 679-50 chr19 28774390 28774763 + 2 NA Intergenic L1PREC2|LINE|L1 -46882 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 311-19 chr1 97711543 97711732 + 2 NA intron (NM_000110, intron 5 of 22) intron (NM_000110, intron 5 of 22) -85284 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 310-337 chr3 101876334 101876619 + 2 NA Intergenic Intergenic 26962 NM_031419 64332 Hs.319171 NM_031419 ENSG00000144802 NFKBIZ IKBZ|INAP|MAIL NFKB inhibitor zeta protein-coding 529-51 chr12 79701047 79701407 + 2 NA Intergenic L2a|LINE|L2 -10130 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 241-188 chr2 80807346 80807499 + 2 NA Intergenic L1PA6|LINE|L1 494043 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 212-218 chr3 103490312 103490453 + 2 NA Intergenic Intergenic 33734 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 663-9 chr10 39326627 39327101 + 2 NA Intergenic ALR/Alpha|Satellite|centr 630268 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 403-198 chr3 88631306 88631684 + 2 NA Intergenic Intergenic 293039 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 424-40 chr11 58156553 58156838 + 2 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) -33739 NM_001005283 219957 Hs.553643 NM_001005283 ENSG00000186513 OR9Q2 OR9Q2P olfactory receptor family 9 subfamily Q member 2 protein-coding 224-294 chr7 10650825 10650974 + 2 NA intron (NR_147499, intron 1 of 2) Charlie7|DNA|hAT-Charlie -51777 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 296-23 chr1 223445313 223445605 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 52044 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 365-194 chr2 81952855 81953057 + 2 NA Intergenic L1ME1|LINE|L1 -486010 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 229-322 chr5 148531543 148531760 + 2 NA intron (NM_001040172, intron 3 of 5) L3|LINE|CR1 105410 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 328-304 chr2 229618202 229618403 + 2 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 96253 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 262-269 chr3 18198546 18198799 + 2 NA intron (NR_161333, intron 4 of 4) L1PB2|LINE|L1 226667 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 226-138 chr18 21350640 21350854 + 2 NA intron (NM_001142966, intron 1 of 32) intron (NM_001142966, intron 1 of 32) 108505 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 515-94 chr18 10362210 10362575 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 51978 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 345 chr1 2937584 2937785 + 2 NA Intergenic Intergenic -83783 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 265-277 chr4 99591501 99591654 + 2 NA intron (NM_001300785, intron 5 of 17) intron (NM_001300785, intron 5 of 17) 27499 NM_001300785 4547 Hs.195799 NM_000253 ENSG00000138823 MTTP ABL|MTP microsomal triglyceride transfer protein protein-coding 319-350 chr3 180261559 180261766 + 2 NA Intergenic L1MA1|LINE|L1 -152511 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 258-372 chr7 81657204 81657426 + 2 NA intron (NR_126025, intron 1 of 10) L1MEg|LINE|L1 -31099 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 252-186 chr2 53756475 53756690 + 2 NA intron (NM_145863, intron 1 of 8) MLT2B3|LTR|ERVL -11201 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 366-216 chr2 132927297 132927493 + 2 NA intron (NR_135572, intron 1 of 1) L1PB4|LINE|L1 11838 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 322-56 chr10 39480742 39481002 + 2 NA Intergenic ALR/Alpha|Satellite|centr 784276 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 605-120 chr8 106837073 106837661 + 2 NA Intergenic Intergenic -67123 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 440-76 chr15 25127894 25128236 + 2 NA intron (NR_146177, intron 61 of 147) Tigger2|DNA|TcMar-Tigger -7577 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 509-85 chr16 72578979 72579339 + 2 NA intron (NR_159372, intron 1 of 7) intron (NR_159372, intron 1 of 7) 85811 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 331-389 chr4 102182922 102183211 + 2 NA Intergenic Intergenic 141246 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 478-277 chr7 111712587 111712953 + 2 NA Intergenic L2|LINE|L2 -95735 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 313-132 chr13 102745854 102746115 + 2 NA exon (NM_001146197, exon 4 of 4) exon (NM_001146197, exon 4 of 4) 13088 NM_001146197 643677 Hs.368382 NM_001146197 ENSG00000175820 CCDC168 C13orf40 coiled-coil domain containing 168 protein-coding 318-113 chr11 98927907 98928091 + 2 NA Intergenic L1MCc|LINE|L1 -92950 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 513-48 chr11 84874269 84874641 + 2 NA intron (NM_001351274, intron 5 of 26) L2c|LINE|L2 48966 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 249-235 chr20 16057052 16057232 + 2 NA Intergenic L1M5|LINE|L1 -71260 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 172-70 chr20 42521010 42521142 + 2 NA intron (NM_133170, intron 7 of 31) (ATCT)n|Simple_repeat|Simple_repeat -164407 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 311-145 chr14 72387919 72388168 + 2 NA intron (NM_001370288, intron 3 of 16) MLT1B|LTR|ERVL-MaLR -128777 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 352-525 chr8 67295838 67296123 + 2 NA intron (NM_006421, intron 5 of 38) intron (NM_006421, intron 5 of 38) 47801 NM_006421 10565 Hs.656902 NM_006421 ENSG00000066777 ARFGEF1 ARFGEP1|BIG1|P200 ADP ribosylation factor guanine nucleotide exchange factor 1 protein-coding 301-80 chr11 120944372 120944541 + 2 NA intron (NR_133004, intron 2 of 2) intron (NR_133004, intron 2 of 2) 13583 NR_133004 101929208 Hs.662310 NR_133004 LOC101929208 - uncharacterized LOC101929208 ncRNA 294-386 chr5 113849004 113849277 + 2 NA Intergenic L1MA9|LINE|L1 335446 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 256-310 chr5 18719257 18719422 + 2 NA Intergenic Intergenic 912065 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 367-226 chr2 167230318 167230598 + 2 NA intron (NM_001199144, intron 3 of 8) intron (NM_001199144, intron 3 of 8) 43086 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 338-275 chr2 136391456 136391706 + 2 NA Intergenic MIRb|SINE|MIR -273426 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 420-229 chr5 45200839 45201087 + 2 NA Intergenic Intergenic 392016 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 368-220 chr19 48208514 48208808 + 2 NA non-coding (NR_033679, exon 10 of 10) non-coding (NR_033679, exon 10 of 10) 32402 NR_033679 22900 Hs.68846 NM_014959 ENSG00000105483 CARD8 CARDINAL|DACAR|DAKAR|NDPP|NDPP1|TUCAN caspase recruitment domain family member 8 protein-coding 561-14 chr1 213343163 213343565 + 2 NA Intergenic Intergenic 292123 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 294-382 chr5 89845835 89846108 + 2 NA Intergenic L1MDa|LINE|L1 170749 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 223-379 chrX 89195352 89195521 + 2 NA Intergenic L1PA15|LINE|L1 448211 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 320-416 chr5 8314539 8314793 + 2 NA Intergenic Intergenic 142898 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 560-139 chr5 110821599 110822006 + 2 NA Intergenic Intergenic 82795 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 201-193 chr5 46301699 46301853 + 2 NA Intergenic ALR/Alpha|Satellite|centr -605396 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 425-27 chr10 12451184 12451579 + 2 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) 62399 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 402-56 chr11 106221870 106222176 + 2 NA Intergenic Intergenic -27996 NR_120552 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 211-163 chr20 37768036 37768229 + 2 NA intron (NM_001281495, intron 8 of 16) intron (NM_001281495, intron 8 of 16) 74102 NM_030877 56259 Hs.472667 NM_030877 ENSG00000132792 CTNNBL1 C20orf33|NAP|P14L|PP8304|dJ633O20.1 catenin beta like 1 protein-coding 286-454 chr8 89620152 89620393 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 137439 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 372-458 chr7 64069756 64069954 + 2 NA intron (NM_001159522, intron 3 of 3) (TGT)n|Simple_repeat|Simple_repeat 24421 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 290-300 chr3 193137373 193137634 + 2 NA Intergenic Intergenic -103719 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 296-417 chr6 145497684 145497845 + 2 NA Intergenic L1PA12|LINE|L1 189113 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 231-207 chr22 34334925 34335152 + 2 NA Intergenic LTR18A|LTR|ERVL -412150 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 195-154 chr3 192661638 192661788 + 2 NA intron (NM_004113, intron 2 of 5) L1M6|LINE|L1 65828 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 372-182 chr17 32435601 32435911 + 2 NA Intergenic AluSz|SINE|Alu -8754 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 303-433 chr7 109669454 109669696 + 2 NA Intergenic Intergenic 290638 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 345-544 chr8 138857612 138857932 + 2 NA intron (NM_152888, intron 3 of 64) MIR3|SINE|MIR 56269 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 201-150 chr3 26274741 26274933 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -347969 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 480-65 chr13 108050506 108050832 + 2 NA Intergenic Intergenic 164113 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 270-439 chrX 44156868 44157123 + 2 NA intron (NM_025184, intron 14 of 14) intron (NM_025184, intron 14 of 14) -183605 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 368-52 chr10 44197250 44197565 + 2 NA Intergenic Intergenic -95343 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 390-370 chr8 40876261 40876515 + 2 NA intron (NM_024645, intron 1 of 6) AluJo|SINE|Alu 21438 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 162-107 chr6 8821443 8821561 + 2 NA Intergenic Intergenic 169293 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 207-303 chr8 127722134 127722266 + 2 NA intron (NR_117102, intron 1 of 3) L1MB7|LINE|L1 11767 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 317-216 chr2 26979968 26980250 + 2 NA intron (NM_012326, intron 1 of 6) intron (NM_012326, intron 1 of 6) 9472 NM_012326 22924 Hs.515860 NM_012326 ENSG00000084764 MAPRE3 EB3|EBF3|EBF3-S|RP3 microtubule associated protein RP/EB family member 3 protein-coding 240-435 chr9 11826963 11827130 + 2 NA Intergenic L1MA4|LINE|L1 -866339 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 277-348 chr6 52197670 52197921 + 2 NA Intergenic Intergenic 11420 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 340-569 chr9 91860461 91860645 + 2 NA intron (NM_001318204, intron 1 of 7) MLT2B3|LTR|ERVL 89675 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 570-124 chr20 43021007 43021542 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 52531 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 317-245 chr2 125010041 125010327 + 2 NA Intergenic Intergenic 984897 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 321-347 chr21 28113453 28113681 + 2 NA intron (NR_126010, intron 2 of 4) intron (NR_126010, intron 2 of 4) 23164 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 277-155 chr17 74272840 74272986 + 2 NA Intergenic L2c|LINE|L2 -1321 NM_001353167 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 340-125 chr13 22168112 22168307 + 2 NA Intergenic Intergenic -42076 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 235-300 chr6 962839 962975 + 2 NA intron (NR_027116, intron 2 of 3) intron (NR_027116, intron 2 of 3) 94409 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 339-408 chr4 65821550 65821864 + 2 NA Intergenic L1MA9|LINE|L1 -151212 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 522-86 chr14 87401129 87401490 + 2 NA Intergenic LTR37B|LTR|ERV1 253985 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 290 chr1 4613846 4614033 + 2 NA Intergenic Intergenic -40670 NM_018836 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 240 chr1 13978949 13979183 + 2 NA Intergenic AluJb|SINE|Alu 229651 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 511-27 chr10 106675172 106675532 + 2 NA intron (NM_001206569, intron 13 of 25) intron (NM_001206569, intron 13 of 25) 489354 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 594-86 chr20 58482786 58483215 + 2 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 31938 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 287-35 chr1 230116649 230116915 + 2 NA intron (NM_004481, intron 1 of 15) Tigger1|DNA|TcMar-Tigger 49544 NM_004481 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 577-67 chr15 88534352 88534893 + 2 NA intron (NM_001144074, intron 1 of 4) L1MD2|LINE|L1 11753 NR_135743 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 303-40 chr10 57665076 57665266 + 2 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -360612 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 410-314 chr8 118886222 118886587 + 2 NA Intergenic L1M3d|LINE|L1 65481 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 375-303 chr4 128596123 128596395 + 2 NA Intergenic Intergenic 168243 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 357-321 chr4 114233199 114233527 + 2 NA Intergenic L1PB1|LINE|L1 -253716 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 428-189 chr3 112146046 112146294 + 2 NA intron (NM_001320531, intron 27 of 27).2 L1PA16|LINE|L1 12747 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 225-367 chr8 117102104 117102288 + 2 NA intron (NM_001172815, intron 2 of 10) X7C_LINE|LINE|CR1 -32799 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 325-303 chr20 13057567 13057796 + 2 NA intron (NM_001349945, intron 3 of 12) intron (NM_001349945, intron 3 of 12) 48709 NM_001349945 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 297-465 chr8 77782175 77782442 + 2 NA Intergenic Intergenic 331611 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 320-483 chr6 61182994 61183221 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -391023 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 309-322 chr21 36497412 36497592 + 2 NA intron (NM_001146077, intron 2 of 2) intron (NM_001146077, intron 2 of 2) -17380 NM_144492 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 520-5 chr1 50338946 50339423 + 2 NA Intergenic L1MC1|LINE|L1 84259 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 543-52 chr11 100253630 100254132 + 2 NA intron (NM_001243270, intron 15 of 23) intron (NM_001243270, intron 15 of 23) -433407 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 551-185 chr7 17357036 17357426 + 2 NA Intergenic Intergenic -17686 NR_110014 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 593-27 chr11 92418850 92419339 + 2 NA intron (NM_001008781, intron 1 of 24) intron (NM_001008781, intron 1 of 24) 66998 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 562-113 chr2 123760355 123760856 + 2 NA Intergenic Intergenic 264569 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 338-313 chr22 26209910 26210168 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 40565 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 367-409 chr7 9452717 9453001 + 2 NA Intergenic L1M5|LINE|L1 -181411 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 386-178 chr2 102262119 102262416 + 2 NA Intergenic L2|LINE|L2 -49235 NM_001282408 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 467-71 chr13 70103382 70103797 + 2 NA intron (NM_020866, intron 1 of 10) L2c|LINE|L2 -3624 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 322-181 chr15 97141024 97141313 + 2 NA Intergenic Intergenic 357733 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 376-149 chr18 22681976 22682218 + 2 NA Intergenic MIRc|SINE|MIR 104740 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 161-101 chr7 14824896 14825025 + 2 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 16490 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 222-257 chr3 188816527 188816718 + 2 NA intron (NM_001167672, intron 7 of 9) intron (NM_001167672, intron 7 of 9) 127841 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 428-322 chr9 126178837 126179113 + 2 NA Intergenic L1MB5|LINE|L1 96940 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 272-63 chr10 110869246 110869420 + 2 NA non-coding (NR_026932, exon 1 of 1) non-coding (NR_026932, exon 1 of 1) 1571 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 276-95 chr11 130552746 130552955 + 2 NA Intergenic MIR|SINE|MIR 103876 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 330-17 chr1 67483742 67483968 + 2 NA Intergenic L2b|LINE|L2 -53453 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 452-97 chr16 6056470 6056836 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 36950 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 339-314 chr20 20957584 20957803 + 2 NA Intergenic L2a|LINE|L2 148665 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 340-191 chr16 62724499 62724815 + 2 NA Intergenic MER67A|LTR|ERV1 -688219 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 623-114 chr6 99211853 99212234 + 2 NA Intergenic Intergenic 87434 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 306-44 chr1 218880857 218881084 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 37541 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 414-3 chr1 42044151 42044499 + 2 NA Intergenic LTR33|LTR|ERVL -8391 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 369-71 chr12 7350599 7350819 + 2 NA Intergenic Intergenic 46377 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 256-147 chr16 6958977 6959117 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 185238 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 269-87 chr12 37982375 37982631 + 2 NA Intergenic ALR/Alpha|Satellite|centr -334271 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 654-14 chr10 20545646 20546176 + 2 NA Intergenic AluJr|SINE|Alu -6059 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 340-425 chr4 180604357 180604562 + 2 NA Intergenic Intergenic 554690 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 450-277 chr7 38069791 38070077 + 2 NA Intergenic Intergenic -108311 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 304-300 chr20 40723062 40723256 + 2 NA Intergenic L1MC4|LINE|L1 -8536 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 737-20 chr12 96174588 96175127 + 2 NA Intergenic L1MA4|LINE|L1 -19518 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 400-54 chr11 66105694 66105938 + 2 NA intron (NM_018026, intron 1 of 23) intron (NM_018026, intron 1 of 23) 35544 NM_018026 55690 Hs.644326 NM_018026 ENSG00000175115 PACS1 MRD17|SHMS phosphofurin acidic cluster sorting protein 1 protein-coding 334-321 chr21 31921188 31921363 + 2 NA intron (NM_014586, intron 1 of 10) intron (NM_014586, intron 1 of 10) 48255 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 237-230 chr3 25197710 25197888 + 2 NA intron (NM_001290216, intron 4 of 10) L1MA3|LINE|L1 -143003 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 535-219 chr6 141503946 141504342 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR 584655 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 146-29 chr14 86602700 86602797 + 2 NA Intergenic Intergenic -303030 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 333-68 chr10 101258166 101258440 + 2 NA intron (NR_120621, intron 2 of 2) MLT1J|LTR|ERVL-MaLR 5247 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LINC02681 - long intergenic non-protein coding RNA 2681 ncRNA 335-583 chrX 77075618 77075917 + 2 NA Intergenic L1PA8A|LINE|L1 -61235 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 485-247 chr6 88156054 88156465 + 2 NA intron (NM_001365872, intron 2 of 4) intron (NM_001365872, intron 2 of 4) 6764 NM_001365874 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 211-267 chr6 167673783 167673966 + 2 NA intron (NR_117091, intron 2 of 2) MIR1_Amn|SINE|MIR 5349 NR_117091 401286 Hs.487182 NR_117091 ENSG00000272549 LINC02538 - long intergenic non-protein coding RNA 2538 ncRNA 281-444 chr8 124235040 124235265 + 2 NA intron (NR_125420, intron 1 of 2) L4_A_Mam|LINE|RTE-X 12246 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 232-410 chrX 51725893 51726061 + 2 NA Intergenic AluSz|SINE|Alu 15465 NM_001355278 441495 Hs.187774 NM_001355278 ENSG00000283093 CENPVL2 CENPVP2 centromere protein V like 2 protein-coding 218-270 chr5 98955056 98955207 + 2 NA intron (NR_151718, intron 1 of 3) intron (NR_151718, intron 1 of 3) -25417 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 279-399 chr7 99863403 99863670 + 2 NA exon (NM_022820, exon 12 of 13) exon (NM_022820, exon 12 of 13) 13497 NM_001005276 81392 Hs.647523 NM_001005276 ENSG00000244623 OR2AE1 OR2AE2 olfactory receptor family 2 subfamily AE member 1 protein-coding 162-78 chr3 211151 211284 + 2 NA intron (NR_045572, intron 1 of 2) intron (NR_045572, intron 1 of 2) 13328 NR_045572 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 456-312 chr8 64924376 64924656 + 2 NA Intergenic L1MA8|LINE|L1 -125779 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 834-18 chr19 27607530 27608144 + 2 NA Intergenic ALR/Alpha|Satellite|centr -185594 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 432-22 chr1 221097529 221097954 + 2 NA Intergenic Intergenic -217601 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 242-387 chr8 33936170 33936366 + 2 NA Intergenic Intergenic -336162 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 358-34 chr10 20235357 20235651 + 2 NA intron (NM_032812, intron 12 of 13) MIR|SINE|MIR -316466 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 176-136 chr8 37741622 37741765 + 2 NA intron (NM_007175, intron 3 of 11) intron (NM_007175, intron 3 of 11) -4267 NR_125821 102723701 Hs.588388 NR_125821 ENSG00000183154 LOC102723701 - uncharacterized LOC102723701 ncRNA 386-282 chr5 16895256 16895574 + 2 NA intron (NM_012334, intron 1 of 40) intron (NM_012334, intron 1 of 40) 40873 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 756-51 chr6 77852766 77853258 + 2 NA intron (NM_001282136, intron 4 of 4) AluSp|SINE|Alu 199973 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 364-182 chr18 9563086 9563363 + 2 NA intron (NR_052003, intron 11 of 19) intron (NR_052003, intron 11 of 19) 51335 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 504-48 chr12 10646526 10646828 + 2 NA intron (NM_018423, intron 1 of 10) THE1B-int|LTR|ERVL-MaLR 27375 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 566-187 chr7 110978820 110979197 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -111998 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 431-66 chr12 56862233 56862643 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 71970 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 254-439 chr9 32924119 32924286 + 2 NA Intergenic MER50B|LTR|ERV1 77374 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 196-29 chr10 62696582 62696698 + 2 NA Intergenic Intergenic -108080 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 333-609 chr9 106882982 106883260 + 2 NA intron (NM_001347997, intron 1 of 12) intron (NM_001347997, intron 1 of 12) 19955 NM_021224 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 263-253 chr3 30339875 30340052 + 2 NA Intergenic MER33|DNA|hAT-Charlie -178905 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 281-281 chr3 29586067 29586244 + 2 NA intron (NM_001003792, intron 3 of 13) intron (NM_001003792, intron 3 of 13) 304843 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 373-126 chr15 27657865 27658215 + 2 NA Intergenic Intergenic 441275 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 338-155 chr13 100689015 100689348 + 2 NA Intergenic MER66-int|LTR|ERV1 -14386 NR_146794 84899 Hs.190983 NM_032813 ENSG00000125247 TMTC4 - transmembrane O-mannosyltransferase targeting cadherins 4 protein-coding 308-170 chr16 24230092 24230276 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -5920 NR_146569 105371142 Hs.128031 NR_146569 ENSG00000260264 LINC2194 - long intergenic non-protein coding RNA 2194 ncRNA 332-465 chr6 168969993 168970318 + 2 NA Intergenic Intergenic -5773 NR_136248 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 212-144 chr2 34213811 34214008 + 2 NA intron (NR_126403, intron 4 of 5) L1MC|LINE|L1 146683 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 324-490 chr7 41814920 41815195 + 2 NA Intergenic L2b|LINE|L2 -111967 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 536-91 chr16 80708350 80708832 + 2 NA intron (NM_152342, intron 1 of 6) intron (NM_152342, intron 1 of 6) 96007 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 205-119 chr17 56737304 56737466 + 2 NA Intergenic Intergenic 96535 NM_001085430 339210 Hs.658949 NM_001085430 ENSG00000214226 C17orf67 - chromosome 17 open reading frame 67 protein-coding 242-409 chr8 121779511 121779680 + 2 NA Intergenic Intergenic -138155 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 421-29 chr10 66227653 66227980 + 2 NA intron (NM_001127384, intron 13 of 17) L1MA5|LINE|L1 656391 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 234-76 chr12 42058665 42058875 + 2 NA Intergenic Intergenic 86104 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 243-445 chr8 76614324 76614523 + 2 NA intron (NR_024360, intron 3 of 3) intron (NR_024360, intron 3 of 3) -66824 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 218-97 chr14 66726068 66726217 + 2 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 218735 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 347-177 chr17 71214979 71215235 + 2 NA Intergenic AluSz|SINE|Alu -12928 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 650-113 chr7 18024624 18025111 + 2 NA Intergenic Intergenic 2979 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 360-206 chr2 27811076 27811429 + 2 NA intron (NM_022128, intron 7 of 7) L2b|LINE|L2 39533 NM_004891 9553 Hs.515879 NM_004891 ENSG00000243147 MRPL33 C2orf1|L33mt|MRP-L33|RPL33L mitochondrial ribosomal protein L33 protein-coding 137-28 chr14 101391059 101391177 + 2 NA Intergenic AluJr|SINE|Alu 16804 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 357-398 chr6 149174018 149174274 + 2 NA Intergenic L2b|LINE|L2 -43778 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 570-190 chr8 19127289 19127700 + 2 NA Intergenic AluSq2|SINE|Alu -113791 NM_015310 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 366-187 chr2 8136284 8136563 + 2 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) -159609 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 404-252 chr5 26352688 26353047 + 2 NA Intergenic Intergenic 685719 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 313-379 chr4 45644837 45645083 + 2 NA Intergenic Intergenic 479094 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 273-179 chr18 2886164 2886368 + 2 NA intron (NM_032048, intron 3 of 7) L2a|LINE|L2 39260 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 617-4 chr1 94090028 94090382 + 2 NA intron (NM_000350, intron 6 of 49) MER6A|DNA|TcMar-Tigger 30943 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 248-117 chr14 67129374 67129547 + 2 NA intron (NM_001024218, intron 16 of 21) intron (NM_001024218, intron 16 of 21) -59980 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 854-4 chr1 78730443 78731001 + 2 NA Intergenic Intergenic 80891 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 760-38 chr2 231814320 231814905 + 2 NA Intergenic AluSq2|SINE|Alu 28167 NM_001282950 64708 Hs.335061 NM_022730 ENSG00000144524 COPS7B CSN7B|SGN7b COP9 signalosome subunit 7B protein-coding 367-455 chr8 88513407 88513682 + 2 NA Intergenic L1MA9|LINE|L1 -186061 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 408-67 chr11 80464748 80465105 + 2 NA Intergenic L1PREC2|LINE|L1 297877 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 377-34 chr10 14126836 14127124 + 2 NA intron (NR_134578, intron 2 of 3) L2b|LINE|L2 52696 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 1009-10 chr2 4289069 4289722 + 2 NA Intergenic Intergenic 315234 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 233-124 chr16 84613443 84613642 + 2 NA intron (NM_021149, intron 2 of 3) intron (NM_021149, intron 2 of 3) 4536 NM_021149 23406 Hs.289092 NM_021149 ENSG00000103187 COTL1 CLP coactosin like F-actin binding protein 1 protein-coding 252-282 chr3 178948807 178948994 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -88495 NR_126561 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 369-116 chr14 62244101 62244328 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -104241 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 387-150 chr18 74573261 74573522 + 2 NA intron (NM_032649, intron 7 of 11) (ATCT)n|Simple_repeat|Simple_repeat 24444 NR_024484 400657 Hs.61508 NM_001008234 ENSG00000264247 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 402-85 chr14 65326123 65326480 + 2 NA Intergenic L1MA5A|LINE|L1 8882 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 326-310 chr21 34172489 34172758 + 2 NA Intergenic L1ME1|LINE|L1 -8054 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 420-127 chr2 25674170 25674527 + 2 NA promoter-TSS (NM_021907) promoter-TSS (NM_021907) -674 NM_001256304 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 218-87 chr14 25519850 25520017 + 2 NA Intergenic Intergenic -469636 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 223-309 chr6 146446855 146447042 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -96885 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 388-109 chr14 61375143 61375367 + 2 NA intron (NM_006255, intron 1 of 13) MSTA-int|LTR|ERVL-MaLR 53812 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 322-145 chr13 66248751 66249037 + 2 NA Intergenic Intergenic 30644 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 538-180 chr4 103939546 103940008 + 2 NA Intergenic L1M1|LINE|L1 -219792 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 261-293 chr4 111815887 111816086 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -329468 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 386-244 chr3 117705646 117705955 + 2 NA Intergenic Intergenic -14875 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 392-253 chr5 96506050 96506415 + 2 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -72984 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 451-115 chr2 75901813 75902145 + 2 NA Intergenic Intergenic -191064 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 500-110 chr18 2132012 2132455 + 2 NA Intergenic Intergenic 439272 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 298-101 chr12 117395548 117395725 + 2 NA Intergenic L1ME3|LINE|L1 -33834 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 341-306 chr20 57890756 57890975 + 2 NA Intergenic Intergenic -113039 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 350-459 chr6 161961573 161961785 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 490702 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 215-190 chr3 56054736 56054929 + 2 NA intron (NR_132749, intron 7 of 17) intron (NR_132749, intron 7 of 17) -202238 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 269-170 chr19 14997567 14997790 + 2 NA intron (NR_073589, intron 1 of 8) intron (NR_073589, intron 1 of 8) 12965 NR_073589 6511 Hs.515217 NM_005071 ENSG00000105143 SLC1A6 EAAT4 solute carrier family 1 member 6 protein-coding 234-160 chr2 27941578 27941723 + 2 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -50536 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 242-445 chrX 75906424 75906607 + 2 NA Intergenic L1ME1|LINE|L1 -121261 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 371-204 chr2 214523606 214523829 + 2 NA intron (NR_047698, intron 1 of 3) AluSz|SINE|Alu 13535 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 238-215 chr21 22634983 22635211 + 2 NA Intergenic (GAAT)n|Simple_repeat|Simple_repeat -444187 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 365-181 chr2 35052328 35052555 + 2 NA Intergenic L1MD1|LINE|L1 374884 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 347-418 chr5 156583115 156583316 + 2 NA intron (NM_001128209, intron 3 of 7) L2a|LINE|L2 256051 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 435-64 chr12 44347089 44347474 + 2 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 511200 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 332-92 chr11 55767611 55767904 + 2 NA Intergenic L1MB1|LINE|L1 -5681 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 260-304 chr4 45606722 45606929 + 2 NA Intergenic Intergenic 517229 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 171-137 chr8 90566890 90567021 + 2 NA Intergenic Intergenic 39108 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 355-228 chr2 14590143 14590368 + 2 NA Intergenic Intergenic -42462 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 201-96 chr16 47519478 47519591 + 2 NA intron (NM_001031835, intron 7 of 31) MLT1F|LTR|ERVL-MaLR 58203 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 312-215 chr18 80054273 80054558 + 2 NA Intergenic L1PB4|LINE|L1 -12841 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 333-160 chr15 25815790 25815958 + 2 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 32951 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 261-416 chrX 43698764 43698923 + 2 NA intron (NM_001270458, intron 4 of 15) intron (NM_001270458, intron 4 of 15) 43936 NM_000240 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 299-386 chr5 165788503 165788772 + 2 NA Intergenic L1MA4|LINE|L1 1137733 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 325-231 chr17 73995580 73995809 + 2 NA Intergenic Intergenic -167157 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 363-462 chr8 135814608 135814816 + 2 NA Intergenic Intergenic 357256 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 347-545 chr9 36212425 36212681 + 2 NA TTS (NM_001184762) TTS (NM_001184762) 21632 NM_001311205 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 392-210 chr3 113012682 113013061 + 2 NA intron (NM_001319114, intron 3 of 7) intron (NM_001319114, intron 3 of 7) 6800 NM_001319109 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 706-78 chr9 93766456 93767067 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -52596 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 357-9 chr1 78483089 78483384 + 2 NA Intergenic Intergenic -7738 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 126-10 chr10 94574422 94574539 + 2 NA intron (NM_001289075, intron 8 of 20) intron (NM_001289075, intron 8 of 20) 28692 NM_001289073 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 328-322 chr20 59695321 59695581 + 2 NA intron (NM_001199506, intron 1 of 12) MSTA|LTR|ERVL-MaLR 18790 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 288-416 chr7 89602484 89602643 + 2 NA Intergenic L1ME4a|LINE|L1 -516837 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 378-321 chr4 143611849 143612161 + 2 NA intron (NM_001168235, intron 5 of 7) intron (NM_001168235, intron 5 of 7) 52533 NR_003675 441046 Hs.135705 NM_001011539 ENSG00000236296 GUSBP5 GYPELOC441046 GUSB pseudogene 5 pseudo 261-403 chr9 11062262 11062455 + 2 NA Intergenic Intergenic 449152 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 199-90 chr18 59977613 59977788 + 2 NA Intergenic L1ME3C|LINE|L1 77704 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 282-40 chr10 33585613 33585837 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 186955 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 456-309 chr8 46866271 46866534 + 2 NA Intergenic Intergenic 25516 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 160-43 chr2 127644616 127644737 + 2 NA intron (NM_001136037, intron 5 of 10) intron (NM_001136037, intron 5 of 10) -1188 NM_001161415 2840 Hs.46453 NM_005291 ENSG00000144230 GPR17 - G protein-coupled receptor 17 protein-coding 391-229 chr3 44554187 44554514 + 2 NA promoter-TSS (NM_001288591) promoter-TSS (NM_001288591) -843 NM_001288592 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 335-14 chr1 87272416 87272739 + 2 NA Intergenic Intergenic -56303 NM_006769 8543 Hs.436792 NM_006769 ENSG00000143013 LMO4 - LIM domain only 4 protein-coding 252-54 chr10 119231770 119231976 + 2 NA intron (NM_005308, intron 1 of 15) L1MA5A|LINE|L1 24302 NM_005308 2869 Hs.524625 NM_005308 ENSG00000198873 GRK5 FP2025|GPRK5 G protein-coupled receptor kinase 5 protein-coding 261-182 chr2 51517411 51517626 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 484917 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 461-58 chr12 23642369 23642667 + 2 NA intron (NM_152989, intron 10 of 17) L2c|LINE|L2 -57932 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 119 chr1 63998394 63998459 + 2 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 113779 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 605-90 chr5 16405126 16405559 + 2 NA intron (NR_104625, intron 7 of 8) intron (NR_104625, intron 7 of 8) 35760 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 165-15 chr11 69298145 69298278 + 2 NA TTS (NM_001293296) TTS (NM_001293296) 4056 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 267-201 chr2 118933533 118933729 + 2 NA Intergenic L1M4c|LINE|L1 -8538 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 121-3 chr10 123953382 123953450 + 2 NA Intergenic MER31A|LTR|ERV1 -61609 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 398-24 chr1 205877531 205877904 + 2 NA intron (NR_046097, intron 1 of 2) AluSz6|SINE|Alu -12303 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 357-393 chr6 120576594 120576869 + 2 NA Intergenic Intergenic 561552 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 350-355 chr4 83914748 83915069 + 2 NA Intergenic Zaphod3|DNA|hAT-Tip100 378800 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 283-94 chr12 15399593 15399816 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 77196 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 627-55 chr2 76539508 76539878 + 2 NA Intergenic L1MDa|LINE|L1 -446272 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 227-20 chr1 215253463 215253679 + 2 NA Intergenic Intergenic 170834 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 344-97 chr12 6348739 6349043 + 2 NA intron (NM_001038, intron 11 of 12) intron (NM_001038, intron 11 of 12) -6774 NM_001065 7132 Hs.279594 NM_001065 ENSG00000067182 TNFRSF1A CD120a|FPF|TBP1|TNF-R|TNF-R-I|TNF-R55|TNFAR|TNFR1|TNFR55|TNFR60|p55|p55-R|p60 TNF receptor superfamily member 1A protein-coding 272-411 chr7 11612723 11612905 + 2 NA intron (NM_015204, intron 2 of 26) L1ME3G|LINE|L1 219384 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 386-144 chr18 73956825 73957155 + 2 NA Intergenic Intergenic 190844 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 559-191 chr8 127227990 127228345 + 2 NA Intergenic Intergenic -8899 NR_108049 100507056 Hs.343864 NR_108049 CCAT1 CARLO5|CARLo-5|onco-lncRNA-40 colon cancer associated transcript 1 ncRNA 439-66 chr12 29866748 29867016 + 2 NA Intergenic L2a|LINE|L2 -82123 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 393-55 chr11 91981224 91981512 + 2 NA Intergenic Intergenic -243666 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 763-38 chr3 1636615 1637101 + 2 NA Intergenic MER41B|LTR|ERV1 -461945 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 334-241 chr19 43976999 43977166 + 2 NA Intergenic Intergenic -7088 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 310-318 chr3 22339400 22339658 + 2 NA Intergenic Intergenic 382390 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 546-100 chr2 21075857 21076227 + 2 NA Intergenic L1MCb|LINE|L1 -31969 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 170-33 chr12 16496645 16496786 + 2 NA Intergenic L1PA16|LINE|L1 108664 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 336-263 chr2 56698178 56698445 + 2 NA Intergenic L1MC4|LINE|L1 -512541 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 206-27 chr10 24076480 24076653 + 2 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -132225 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 207-38 chr10 64645934 64646110 + 2 NA Intergenic Intergenic -179506 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 405-95 chr15 54200991 54201312 + 2 NA intron (NM_001329919, intron 4 of 31) L1PB1|LINE|L1 188503 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 260-60 chr10 91453310 91453487 + 2 NA intron (NM_182765, intron 2 of 20) AluJr|SINE|Alu 43113 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 316-455 chr5 118408220 118408408 + 2 NA intron (NR_104610, intron 9 of 9) (TG)n|Simple_repeat|Simple_repeat 125740 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 376-148 chr18 13024003 13024270 + 2 NA intron (NM_032142, intron 9 of 44) L1MB2|LINE|L1 32774 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 639-8 chr1 197564761 197565255 + 2 NA intron (NM_144977, intron 15 of 15) intron (NM_144977, intron 15 of 15) 210472 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 319-265 chr2 149901905 149902140 + 2 NA Intergenic LTR16|LTR|ERVL -42831 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 189-114 chr21 18680767 18680942 + 2 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 5310 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 241-309 chr5 92971610 92971815 + 2 NA Intergenic Intergenic 599631 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 320-536 chr8 53518385 53518617 + 2 NA intron (NR_149032, intron 1 of 1) intron (NR_149032, intron 1 of 1) 5464 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 293-215 chr2 180132004 180132233 + 2 NA Intergenic Intergenic -124821 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 258-300 chr4 139779331 139779495 + 2 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 113594 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 276-377 chr5 100199177 100199342 + 2 NA Intergenic L2b|LINE|L2 188995 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 476-84 chr14 62000817 62001204 + 2 NA intron (NM_001367661, intron 4 of 8) FRAM|SINE|Alu 73315 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 303-395 chr6 54571161 54571369 + 2 NA Intergenic Intergenic 262824 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 523-210 chr4 188947654 188947993 + 2 NA Intergenic L1MEc|LINE|L1 171166 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 259-372 chr7 77431722 77431950 + 2 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? -15487 NM_001350899 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 311-127 chr14 36153710 36153935 + 2 NA non-coding (NR_049735, exon 3 of 4) non-coding (NR_049735, exon 3 of 4) 22829 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 593-117 chr5 160645399 160645780 + 2 NA intron (NM_001366652, intron 7 of 24) intron (NM_001366652, intron 7 of 24) 39802 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 177-60 chr16 18024616 18024765 + 2 NA Intergenic Intergenic 307972 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 208-128 chr2 137575458 137575623 + 2 NA intron (NM_001316349, intron 17 of 27) intron (NM_001316349, intron 17 of 27) 352392 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 547-266 chrX 62753807 62754171 + 2 NA Intergenic MER9a3|LTR|ERVK 597343 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 218-269 chr5 88458840 88459027 + 2 NA Intergenic Intergenic -19843 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 286-450 chr8 81177778 81178047 + 2 NA Intergenic Intergenic -65844 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 480-100 chr16 48040845 48041146 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 75306 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 437-145 chr2 141000482 141000785 + 2 NA intron (NM_018557, intron 15 of 90) intron (NM_018557, intron 15 of 90) -413948 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 458-114 chr19 37847409 37847827 + 2 NA intron (NR_040015, intron 2 of 5) AluSc|SINE|Alu 7578 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 450-158 chr2 177182850 177183147 + 2 NA Intergenic Intergenic 29413 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 367-380 chr5 165081612 165081908 + 2 NA Intergenic Intergenic 611481 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 220-177 chr2 112027990 112028127 + 2 NA intron (NM_006343, intron 18 of 18) MER58A|DNA|hAT-Charlie -27211 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 298-329 chr4 77644035 77644236 + 2 NA Intergenic L1MA1|LINE|L1 132382 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 377-273 chr3 114770508 114770789 + 2 NA intron (NM_001164343, intron 4 of 11) intron (NM_001164343, intron 4 of 11) -11541 NM_001164345 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 334-130 chr13 82684637 82684877 + 2 NA Intergenic Intergenic 1197636 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 388-164 chr2 99915010 99915217 + 2 NA intron (NM_001025108, intron 6 of 23) L1MC4|LINE|L1 190470 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 468-241 chr5 31308062 31308375 + 2 NA intron (NM_001362435, intron 7 of 10) intron (NM_001362435, intron 7 of 10) 114532 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 466-228 chr6 89381396 89381771 + 2 NA intron (NM_021244, intron 2 of 6) L1ME3E|LINE|L1 -28861 NM_016021 51465 Hs.163776 NM_016021 ENSG00000198833 UBE2J1 CGI-76|HSPC153|HSPC205|HSU93243|NCUBE-1|NCUBE1|UBC6|UBC6E|Ubc6p ubiquitin conjugating enzyme E2 J1 protein-coding 341-474 chr6 147404088 147404360 + 2 NA Intergenic L1MA3|LINE|L1 -104466 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 276-288 chr3 42877228 42877438 + 2 NA Intergenic Intergenic -1454 NM_004391 1582 Hs.447793 NM_004391 ENSG00000180432 CYP8B1 CP8B|CYP12 cytochrome P450 family 8 subfamily B member 1 protein-coding 240-234 chr2 144625557 144625722 + 2 NA Intergenic Intergenic -42328 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 251-318 chr5 140768636 140768851 + 2 NA Intergenic L1M4|LINE|L1 -17393 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 545-173 chr5 7251683 7252145 + 2 NA Intergenic Intergenic 17440 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 269-35 chr10 5087973 5088193 + 2 NA intron (NM_001253908, intron 1 of 8) L1PA15-16|LINE|L1 -6331 NM_003739 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 340-271 chr2 107469340 107469615 + 2 NA Intergenic LTR12C|LTR|ERV1 -59942 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 320-310 chr20 41667144 41667330 + 2 NA Intergenic Intergenic -48860 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 634-130 chr6 18955858 18956230 + 2 NA Intergenic MIR|SINE|MIR 224436 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 520-160 chr2 189806375 189806825 + 2 NA 3' UTR (NM_001321049, exon 4 of 4) 3' UTR (NM_001321049, exon 4 of 4) 22150 NR_110332 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 359-236 chr2 104266250 104266473 + 2 NA Intergenic L1MA9|LINE|L1 141971 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 501-83 chr18 3807703 3808139 + 2 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 37437 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 488-183 chr3 189223422 189223901 + 2 NA intron (NM_198485, intron 3 of 5) intron (NM_198485, intron 3 of 5) 16933 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 604-4 chr1 96481420 96481885 + 2 NA Intergenic Intergenic -107527 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 369-28 chr10 19300657 19300882 + 2 NA intron (NM_001142308, intron 21 of 39) L1PA15|LINE|L1 251968 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 312-241 chr2 80166009 80166203 + 2 NA intron (NM_001282598, intron 7 of 17) MER21C|LTR|ERVL 138646 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 241-22 chr1 190613349 190613549 + 2 NA Intergenic Penelope1_Vert|LINE|Penelope -11441 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 159-87 chr7 31770710 31770855 + 2 NA intron (NM_001191059, intron 18 of 18) AluSx1|SINE|Alu 83567 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 364-450 chr8 106017310 106017651 + 2 NA intron (NR_125797, intron 1 of 4) THE1B|LTR|ERVL-MaLR 43023 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 363-162 chr16 26762126 26762387 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -304671 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 541-170 chr4 86826227 86826676 + 2 NA intron (NM_197965, intron 4 of 5) AluSx|SINE|Alu 22933 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 330-405 chr5 13203909 13204093 + 2 NA Intergenic Intergenic -171115 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 390-284 chr5 19752092 19752421 + 2 NA intron (NM_001349559, intron 3 of 12) L1PBa|LINE|L1 134016 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 323-40 chr10 6905740 6906024 + 2 NA Intergenic L2|LINE|L2 126284 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 327-179 chr16 9759573 9759880 + 2 NA 3' UTR (NM_000833, exon 14 of 14) 3' UTR (NM_000833, exon 14 of 14) -304221 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 617-38 chr14 86376906 86377451 + 2 NA Intergenic L1MC5|LINE|L1 442500 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 385-297 chr5 53699541 53699795 + 2 NA Intergenic L1MA9|LINE|L1 120014 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 204-168 chr20 55197628 55197804 + 2 NA Intergenic L1MEd|LINE|L1 -225327 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 236-96 chr12 127721553 127721706 + 2 NA Intergenic MER67D|LTR|ERV1 -66041 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 467-261 chr7 41524046 41524428 + 2 NA Intergenic MER11C|LTR|ERVK -169682 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 226-76 chr13 24733993 24734146 + 2 NA Intergenic L1ME3A|LINE|L1 -30100 NM_001184993 56163 Hs.97464 NM_031277 ENSG00000132972 RNF17 Mmip-2|SPATA23|TDRD4 ring finger protein 17 protein-coding 208-33 chr10 131294074 131294209 + 2 NA intron (NM_174937, intron 3 of 11) intron (NM_174937, intron 3 of 11) 17580 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 383-172 chr19 43958333 43958611 + 2 NA intron (NM_001297589, intron 1 of 4) MER4B-int|LTR|ERV1 7227 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 381-197 chr2 98970655 98970900 + 2 NA Intergenic L1MA4|LINE|L1 -34552 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 451-183 chr5 120938604 120938923 + 2 NA Intergenic Intergenic -383787 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 234-212 chr20 31447425 31447598 + 2 NA intron (NM_153324, intron 1 of 1) L1MEc|LINE|L1 6879 NR_126450 245936 Hs.122509 NM_153324 ENSG00000180424 DEFB123 DEFB-23|DEFB23|ESC42-RELD defensin beta 123 protein-coding 215-22 chr1 239029248 239029416 + 2 NA Intergenic L1ME1|LINE|L1 -357236 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 356-207 chr18 38571032 38571243 + 2 NA Intergenic Intergenic 914002 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 271-149 chr15 76027480 76027690 + 2 NA Intergenic L1M2c|LINE|L1 -15161 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 218-8 chr1 65399150 65399361 + 2 NA intron (NM_001256864, intron 14 of 18) MIRb|SINE|MIR -21397 NM_001003680 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 447-235 chr6 140650699 140650964 + 2 NA Intergenic Intergenic -32983 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 176-8 chr1 238573454 238573594 + 2 NA Intergenic L1MD3|LINE|L1 -87507 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 304-46 chr10 31428524 31428742 + 2 NA intron (NM_001323646, intron 4 of 11) L1PA13|LINE|L1 -28878 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 273-177 chr17_GL000205v2_random 25961 26110 + 2 NA Intergenic CER|Satellite|Satellite 31931 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 212-300 chr7 39167085 39167266 + 2 NA intron (NM_001370959, intron 2 of 9) (AT)n|Simple_repeat|Simple_repeat -153608 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 275-342 chr7 97248873 97249088 + 2 NA Intergenic MIRb|SINE|MIR 132387 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 310-533 chr8 121336489 121336667 + 2 NA Intergenic AluSx1|SINE|Alu -302768 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 204-234 chr5 51747709 51747851 + 2 NA Intergenic Intergenic -260251 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 360-406 chr6 64140309 64140559 + 2 NA intron (NM_001292009, intron 31 of 43) LTR33|LTR|ERVL 333598 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 194-145 chr4 65413010 65413167 + 2 NA intron (NM_001281767, intron 7 of 16) intron (NM_001281767, intron 7 of 16) 256400 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 357-353 chr5 107839649 107839909 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -168842 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 546-257 chr9 106160711 106161104 + 2 NA Intergenic L2a|LINE|L2 -440021 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 435-144 chr22 22802618 22803026 + 2 NA Intergenic Intergenic -19954 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 721-43 chr20 1645631 1646186 + 2 NA intron (NR_110090, intron 2 of 2) MIRc|SINE|MIR 11871 NM_001039508 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 229-344 chr6 156226171 156226339 + 2 NA Intergenic L1MA2|LINE|L1 -152495 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 360-369 chr5 67851877 67852177 + 2 NA Intergenic L1MEf|LINE|L1 58814 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 293-204 chr2 134564512 134564697 + 2 NA intron (NM_030923, intron 2 of 7) L1ME3A|LINE|L1 154396 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 305-390 chr4 63483861 63484047 + 2 NA Intergenic Intergenic 925496 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 328-446 chr5 42395425 42395595 + 2 NA Intergenic Intergenic -27929 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 250-140 chr15 71489298 71489515 + 2 NA intron (NM_024817, intron 6 of 16) Arthur1|DNA|hAT-Tip100 -57830 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 228-345 chr8 115747548 115747700 + 2 NA Intergenic Intergenic -78649 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 139-79 chr6 56018484 56018576 + 2 NA Intergenic Intergenic 73132 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 287-287 chr4 89589833 89590015 + 2 NA Intergenic LTR68|LTR|ERV1 -246477 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 226-391 chrX 10306680 10306836 + 2 NA Intergenic L1PB4|LINE|L1 149783 NM_001830 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 404-234 chr4 77561440 77561733 + 2 NA intron (NM_006419, intron 1 of 4) MIRb|SINE|MIR 49833 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 342-507 chr8 43602222 43602554 + 2 NA Intergenic ALR/Alpha|Satellite|centr 309946 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 201-122 chr2 80163876 80164034 + 2 NA intron (NM_001282598, intron 7 of 17) L1MD1|LINE|L1 140797 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 544-121 chr2 123501417 123501823 + 2 NA Intergenic MIRc|SINE|MIR -428139 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 232-229 chr22 34865920 34866086 + 2 NA intron (NR_138042, intron 3 of 4) MIR|SINE|MIR 131913 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 425-197 chr4 21473733 21473954 + 2 NA intron (NM_147182, intron 2 of 8) AluSx|SINE|Alu -9085 NR_107018 102465859 NR_107018 ENSG00000283281 MIR7978 hsa-mir-7978 microRNA 7978 ncRNA 133-9 chr10 101069402 101069528 + 2 NA Intergenic Intergenic 3166 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 489-21 chr1 228091255 228091617 + 2 NA intron (NM_001024227, intron 1 of 4) intron (NM_001024227, intron 1 of 4) -5827 NR_037415 100500810 NR_037415 ENSG00000284163 MIR3620 mir-3620 microRNA 3620 ncRNA 323-199 chr18 37049497 37049722 + 2 NA intron (NM_001353920, intron 7 of 10) intron (NM_001353920, intron 7 of 10) -125795 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 364-436 chr8 68087000 68087292 + 2 NA intron (NM_024870, intron 18 of 39) intron (NM_024870, intron 18 of 39) 135100 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 521-208 chr5 169918471 169918830 + 2 NA intron (NM_001346304, intron 1 of 3) AluSx1|SINE|Alu 61845 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 325-418 chr4 178619058 178619316 + 2 NA Intergenic Intergenic -711251 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 174-26 chr11 115152114 115152251 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -181395 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 536-178 chr5 4508629 4509067 + 2 NA Intergenic Intergenic -264633 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 218-184 chr2 223329624 223329769 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 272665 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 314-593 chr8 139666139 139666334 + 2 NA intron (NR_104210, intron 1 of 3) MIRb|SINE|MIR 36887 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 284-165 chr17 69876905 69877161 + 2 NA intron (NR_109972, intron 4 of 4) L1MB7|LINE|L1 -84674 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 391-201 chr20 22054426 22054752 + 2 NA intron (NR_038394, intron 1 of 3) intron (NR_038394, intron 1 of 3) 499 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 283-357 chr5 51322835 51323063 + 2 NA Intergenic L3|LINE|CR1 60383 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 298-2 chr1 48477666 48477818 + 2 NA Intergenic L1MEc|LINE|L1 -5534 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 363-188 chr18 43446829 43447017 + 2 NA Intergenic L1P4b|LINE|L1 -169433 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 513-211 chr4 129584852 129585170 + 2 NA Intergenic L1M4|LINE|L1 186467 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 331-488 chr7 30221212 30221401 + 2 NA Intergenic AluJo|SINE|Alu -63291 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 228-139 chr18 3202228 3202417 + 2 NA intron (NM_019856, intron 2 of 36) L1M4a2|LINE|L1 17646 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 357-472 chr9 7394553 7394830 + 2 NA Intergenic MIRc|SINE|MIR 405087 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 377-120 chr14 56568501 56568729 + 2 NA Intergenic Intergenic -11183 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 247-427 chr9 31345208 31345357 + 2 NA Intergenic L1MC4a|LINE|L1 36208 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 297-235 chr2 157609669 157609838 + 2 NA intron (NM_145259, intron 1 of 8) L1MA4A|LINE|L1 -12193 NM_001111031 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 273-418 chr7 21377943 21378138 + 2 NA Intergenic MER21C|LTR|ERVL -50043 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 517-183 chr3 168277691 168278074 + 2 NA intron (NR_021485, intron 1 of 15) L2c|LINE|L2 28360 NR_021485 93556 Hs.478158 NR_021485 EGFEM1P C3orf50|NCRNA00259 EGF like and EMI domain containing 1, pseudogene pseudo 425-4 chr1 69136550 69136779 + 2 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 80766 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 258-209 chr2 177355478 177355676 + 2 NA intron (NR_026966, intron 1 of 8) intron (NR_026966, intron 1 of 8) 37114 NR_026966 100130691 Hs.707723 NM_182585 ENSG00000213963 LOC100130691 - uncharacterized LOC100130691 ncRNA 443-112 chr15 100476165 100476532 + 2 NA intron (NM_001290341, intron 9 of 13) intron (NM_001290341, intron 9 of 13) 67938 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 359-258 chr2 192843449 192843754 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 93756 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 212-262 chr5 99191168 99191322 + 2 NA Intergenic Intergenic -261531 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 542-63 chr15 20217866 20218298 + 2 NA Intergenic AluSq2|SINE|Alu -64662 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 238-152 chr18 66328192 66328387 + 2 NA Intergenic LTR43|LTR|ERV1 275801 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 249-185 chr2 24188668 24188870 + 2 NA intron (NM_001040710, intron 5 of 5) L1ME3B|LINE|L1 13716 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 335-143 chr13 74628002 74628236 + 2 NA Intergenic Intergenic 75276 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 440-28 chr10 97965163 97965467 + 2 NA intron (NM_001206528, intron 2 of 14) MIR|SINE|MIR 65306 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 305-332 chr3 1708669 1708834 + 2 NA Intergenic Intergenic -390052 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 474-174 chr21 32207702 32207997 + 2 NA Intergenic Intergenic 71200 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 431-255 chr6 122206348 122206607 + 2 NA Intergenic Intergenic -193074 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 516-155 chr21 16608216 16608723 + 2 NA non-coding (NR_136542, exon 8 of 8) non-coding (NR_136542, exon 8 of 8) 18232 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 214-333 chr8 114982036 114982228 + 2 NA Intergenic Intergenic 685881 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 272-92 chr12 37839711 37839918 + 2 NA Intergenic ALR/Alpha|Satellite|centr -476960 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 303-98 chr12 128711796 128712043 + 2 NA Intergenic Intergenic 112039 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 391-70 chr12 18279946 18280213 + 2 NA intron (NM_001288774, intron 1 of 32) intron (NM_001288774, intron 1 of 32) 18539 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 418-300 chr8 142061263 142061550 + 2 NA Intergenic Intergenic -114933 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 580-190 chr7 98575821 98576251 + 2 NA Intergenic L1MCc|LINE|L1 -41249 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 187-94 chr20 23930230 23930390 + 2 NA Intergenic L2|LINE|L2 -50562 NM_001900 1473 Hs.121489 NM_001900 ENSG00000170367 CST5 - cystatin D protein-coding 231-325 chr7 31595380 31595535 + 2 NA intron (NM_194300, intron 8 of 12) intron (NM_194300, intron 8 of 12) 42455 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 449-214 chr5 99899165 99899567 + 2 NA Intergenic Intergenic 365376 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 161-99 chr6 167914185 167914315 + 2 NA exon (NM_001366319, exon 16 of 33) exon (NM_001366319, exon 16 of 33) 62689 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 270-45 chr10 109049093 109049316 + 2 NA Intergenic Intergenic 874042 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 634-158 chr9 12094672 12095221 + 2 NA Intergenic Intergenic -598439 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 419-12 chr1 88418001 88418286 + 2 NA Intergenic L1MB3|LINE|L1 -266001 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 358-435 chr7 48168953 48169220 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -2372 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 446-51 chr10 98068307 98068743 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -37697 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 352-515 chr8 14146121 14146412 + 2 NA intron (NM_001322880, intron 4 of 6) L1MA1|LINE|L1 516576 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 455-28 chr10 78718255 78718609 + 2 NA Intergenic MIRb|SINE|MIR 349016 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 393-329 chr7 64080278 64080493 + 2 NA 3' UTR (NM_001159522, exon 4 of 4) 3' UTR (NM_001159522, exon 4 of 4) 34951 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 311-37 chr1 225273474 225273694 + 2 NA intron (NM_001367479, intron 52 of 85) intron (NM_001367479, intron 52 of 85) 154454 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 210-98 chr17 61142940 61143114 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 224677 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 403-176 chr20 22985304 22985646 + 2 NA Intergenic Intergenic -49945 NM_001052 6754 Hs.673846 NM_001052 ENSG00000132671 SSTR4 SS-4-R|SS4-R|SS4R somatostatin receptor 4 protein-coding 303-398 chr6 80533743 80533984 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 427192 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 389-278 chr5 7025766 7026124 + 2 NA Intergenic L1MB8|LINE|L1 -198024 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 287-331 chr5 133258559 133258729 + 2 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 169062 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 312-282 chr20 10898271 10898437 + 2 NA intron (NR_109866, intron 1 of 6) intron (NR_109866, intron 1 of 6) 10918 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 467-86 chr14 82279210 82279669 + 2 NA Intergenic Intergenic -363193 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 292-313 chr4 43331419 43331626 + 2 NA Intergenic LTR52|LTR|ERVL 161021 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 290-494 chrX 128835082 128835351 + 2 NA Intergenic Intergenic 688274 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 956-16 chr2 114525536 114526298 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 64340 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 556-111 chr2 160871588 160872091 + 2 NA Intergenic Intergenic -265116 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 345-318 chr21 23995582 23995817 + 2 NA Intergenic Intergenic 325678 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 317-436 chr7 6701698 6701934 + 2 NA intron (NM_006956, intron 2 of 5) L2|LINE|L2 5131 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 624-18 chr10 112238677 112239194 + 2 NA Intergenic L1MA3|LINE|L1 -44465 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 219-24 chr1 196586613 196586789 + 2 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) -4220 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 280-271 chr3 176398635 176398807 + 2 NA Intergenic MER45R|DNA|hAT-Tip100 -116382 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 565-133 chr4 112036419 112036963 + 2 NA Intergenic (ATTTTCC)n|Simple_repeat|Simple_repeat -108763 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 212-356 chrX 76517812 76517933 + 2 NA Intergenic HERVL-int|LTR|ERVL 90162 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 435-198 chr5 93043419 93043690 + 2 NA Intergenic Intergenic 527789 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 228-363 chr9 25566082 25566247 + 2 NA Intergenic Intergenic 112694 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 270-149 chr17 15899291 15899441 + 2 NA Intergenic Intergenic -45551 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 267-21 chr1 150743320 150743558 + 2 NA intron (NM_001199739, intron 6 of 6) FLAM_C|SINE|Alu 22339 NM_004079 1520 Hs.181301 NM_004079 ENSG00000163131 CTSS - cathepsin S protein-coding 140-78 chr8 110964803 110964928 + 2 NA intron (NR_125417, intron 5 of 5) intron (NR_125417, intron 5 of 5) 62568 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 425-331 chrX 101960449 101960872 + 2 NA Intergenic Intergenic -28633 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 413-89 chr14 79683108 79683365 + 2 NA intron (NM_004796, intron 14 of 16) L3|LINE|CR1 403856 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 323-410 chr5 42642418 42642637 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 76663 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 313-391 chr4 82530614 82530912 + 2 NA intron (NM_001353454, intron 1 of 7) MSTA|LTR|ERVL-MaLR 31225 NM_001080506 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 457-259 chr8 89849519 89849874 + 2 NA Intergenic Intergenic -52172 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 199-64 chr15 33023352 33023494 + 2 NA intron (NM_001277313, intron 6 of 20) L1MEi|LINE|L1 44751 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 310-145 chr14 86916227 86916434 + 2 NA intron (NR_038445, intron 3 of 4) intron (NR_038445, intron 3 of 4) 10552 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 335-221 chr19 32148396 32148573 + 2 NA Intergenic L1MDa|LINE|L1 -42568 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 311-109 chr12 106340125 106340350 + 2 NA intron (NM_152772, intron 8 of 9) intron (NM_152772, intron 8 of 9) -17511 NM_018082 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 264-70 chr11 5093648 5093861 + 2 NA Intergenic Intergenic 24382 NR_145505 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 372-22 chr1 119628668 119628866 + 2 NA intron (NM_001080470, intron 1 of 2) intron (NM_001080470, intron 1 of 2) 19499 NM_001080470 90874 Hs.381105 NM_001080470 ENSG00000143067 ZNF697 - zinc finger protein 697 protein-coding 221-191 chr3 95609587 95609761 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 73519 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 319-120 chr12 128211446 128211763 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -55799 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 591-102 chr3 182935372 182935745 + 2 NA Intergenic Intergenic 44980 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 293-472 chr9 82930102 82930319 + 2 NA Intergenic Intergenic 132932 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 239-217 chr21 14942563 14942766 + 2 NA Intergenic MIR3|SINE|MIR -23996 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 277-156 chr17 81799906 81800153 + 2 NA Intergenic HAL1ME|LINE|L1 -4121 NM_000160 2642 Hs.208 NM_000160 ENSG00000215644 GCGR GGR|GL-R glucagon receptor protein-coding 426-293 chr8 85367743 85368034 + 2 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) 10225 NM_001291968 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 358-518 chr9 94692204 94692465 + 2 NA Intergenic Intergenic -34335 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 244-333 chr7 8401670 8401852 + 2 NA Intergenic Intergenic -31848 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 264-350 chr6 23713321 23713499 + 2 NA Intergenic Intergenic -412805 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 396-131 chr18 13091731 13092087 + 2 NA intron (NM_032142, intron 33 of 44) MIR|SINE|MIR 100547 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 456-211 chr3 166882438 166882838 + 2 NA Intergenic L1PB3|LINE|L1 -16045 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 312-130 chr13 91462766 91463050 + 2 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 64287 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 532-37 chr11 98603596 98603953 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -417175 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 455-35 chr10 90822139 90822504 + 2 NA intron (NM_019860, intron 1 of 2) MSTA-int|LTR|ERVL-MaLR 35718 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 207-221 chr4 73010537 73010731 + 2 NA Intergenic Intergenic 59082 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 217-219 chr3 30217567 30217721 + 2 NA Intergenic L2c|LINE|L2 -283488 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 393-131 chr17 67056340 67056627 + 2 NA 3' UTR (NM_000727, exon 4 of 4) 3' UTR (NM_000727, exon 4 of 4) 11929 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 345-24 chr1 165347593 165347851 + 2 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 8519 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 167-47 chr18 14100499 14100631 + 2 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 31870 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 239-150 chr18 71814395 71814576 + 2 NA Intergenic L1PA16|LINE|L1 -32259 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 326-400 chr5 36239879 36240198 + 2 NA intron (NM_001287341, intron 1 of 12) intron (NM_001287341, intron 1 of 12) 1353 NM_001287340 133686 Hs.81907 NM_153013 ENSG00000152620 NADK2 C5orf33|DECRD|MNADK|NADKD1 NAD kinase 2, mitochondrial protein-coding 503-237 chr5 141196810 141197145 + 2 NA Intergenic HAL1|LINE|L1 -2650 NM_018931 56125 Hs.283084 NM_018931 ENSG00000197479 PCDHB11 ME2|PCDH-BETA11 protocadherin beta 11 protein-coding 253-173 chr2 17210707 17210867 + 2 NA Intergenic L1MA9|LINE|L1 307653 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 178-7 chr1 91881032 91881180 + 2 NA intron (NM_001195684, intron 2 of 17) intron (NM_001195684, intron 2 of 17) 5045 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 363-344 chr4 122330838 122331167 + 2 NA intron (NM_015312, intron 64 of 83) intron (NM_015312, intron 64 of 83) -48009 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 215-232 chr4 94492766 94492943 + 2 NA intron (NM_001256428, intron 2 of 11) L1MB5|LINE|L1 40912 NM_001256428 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 419-315 chrX 65316508 65316860 + 2 NA Intergenic L1PA13|LINE|L1 -172051 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 264-37 chr10 30711929 30712095 + 2 NA intron (NR_036438, intron 8 of 9) intron (NR_036438, intron 8 of 9) -11207 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 322-196 chr17 21976895 21977090 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -226003 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 315-32 chr1 203094365 203094594 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -8467 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 451-234 chr8 109021310 109021718 + 2 NA Intergenic Intergenic -65114 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 346-388 chr5 52661811 52662020 + 2 NA Intergenic Intergenic -126001 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 367-287 chr3 100900399 100900698 + 2 NA intron (NM_001349332, intron 3 of 35) intron (NM_001349332, intron 3 of 35) 92942 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 428-22 chr10 19152518 19152844 + 2 NA intron (NM_001142308, intron 11 of 39) L1M5|LINE|L1 103880 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 216-153 chr19 56880155 56880364 + 2 NA Intergenic AluSq2|SINE|Alu 39357 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 282-251 chr2 221255124 221255326 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 317079 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 424-200 chr4 105679004 105679335 + 2 NA 3' UTR (NM_001242729, exon 14 of 14) 3' UTR (NM_001242729, exon 14 of 14) 29520 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 421-203 chr4 11242192 11242485 + 2 NA Intergenic L1MC4|LINE|L1 -126489 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 388-276 chr5 52199832 52200136 + 2 NA Intergenic Intergenic 191953 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 315-255 chr2 125218548 125218767 + 2 NA Intergenic L1MA5A|LINE|L1 899328 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 306-355 chr4 58176616 58176776 + 2 NA Intergenic L1ME1|LINE|L1 359632 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 328-410 chr4 89142689 89143000 + 2 NA Intergenic Intergenic 30027 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 173-142 chr8 126237876 126238016 + 2 NA Intergenic Intergenic -87549 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 200-90 chr15 97464378 97464514 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 57365 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 339-458 chr5 109222797 109222987 + 2 NA Intergenic Intergenic 103477 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 379-180 chr2 215863269 215863546 + 2 NA Intergenic L1ME2|LINE|L1 -19871 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 304-100 chr12 13565918 13566107 + 2 NA intron (NM_000834, intron 12 of 12) intron (NM_000834, intron 12 of 12) -189267 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 340-368 chr3 95906021 95906255 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -222945 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 273-455 chr8 117559063 117559240 + 2 NA Intergenic Intergenic 38438 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 347-538 chr8 142310274 142310519 + 2 NA intron (NM_001366903, intron 9 of 9) L1ME3|LINE|L1 92786 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 251-50 chr11 36918182 36918407 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -320015 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 325-31 chr1 185008859 185009148 + 2 NA TTS (NR_146489) TTS (NR_146489) 7476 NR_146489 101929069 Hs.497170 NR_146489 ENSG00000260976 LINC01633 GS1-120K12.4 long intergenic non-protein coding RNA 1633 ncRNA 320-373 chr3 193623854 193624159 + 2 NA intron (NR_046634, intron 1 of 2) intron (NR_046634, intron 1 of 2) 3326 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 185-127 chr22 27048180 27048341 + 2 NA 3' UTR (NM_001318329, exon 2 of 2) 3' UTR (NM_001318329, exon 2 of 2) 12258 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 498-192 chr4 52348293 52348776 + 2 NA Intergenic PRIMA41-int|LTR|ERV1 297230 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 337-511 chr7 7992257 7992436 + 2 NA intron (NM_138426, intron 1 of 7) intron (NM_138426, intron 1 of 7) 23550 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 385-92 chr14 36110867 36111093 + 2 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 40553 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 257-358 chr6 76380506 76380717 + 2 NA Intergenic L1M1|LINE|L1 213012 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 223-96 chr15 35796843 35797006 + 2 NA intron (NR_038251, intron 2 of 2) L1MCa|LINE|L1 -129932 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 216-319 chr7 31902323 31902496 + 2 NA intron (NM_001322059, intron 3 of 17) L1M5|LINE|L1 167998 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 381-96 chr13 106252239 106252513 + 2 NA Intergenic L1M6|LINE|L1 -124188 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 280-194 chr2 61726473 61726685 + 2 NA Intergenic L2c|LINE|L2 127481 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 343-126 chr13 73552686 73552890 + 2 NA Intergenic Intergenic -11456 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 443-206 chr3 105970386 105970665 + 2 NA Intergenic Intergenic -101124 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 154-89 chr5 80118237 80118385 + 2 NA intron (NR_126061, intron 11 of 13) MLT1D|LTR|ERVL-MaLR -34646 NR_109930 101929215 NR_109930 ENSG00000249825 CTD-2201I18.1 - uncharacterized LOC101929215 ncRNA 449-86 chr15 37523672 37524065 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -410739 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 196-61 chr12 47476603 47476715 + 2 NA Intergenic L1PA15-16|LINE|L1 61651 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 332-126 chr12 56854036 56854288 + 2 NA Intergenic L1M5|LINE|L1 80246 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 313-53 chr10 78788944 78789215 + 2 NA Intergenic L1ME4b|LINE|L1 278369 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 163-66 chr2 122902969 122903098 + 2 NA Intergenic L1MEg|LINE|L1 170448 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 558-48 chr13 27700689 27701011 + 2 NA Intergenic L1MCa|LINE|L1 78958 NM_152705 51082 Hs.507584 NM_015972 ENSG00000186184 POLR1D AC19|POLR1C|RPA16|RPA9|RPAC2|RPC16|RPO1-3|TCS2 RNA polymerase I and III subunit D protein-coding 263-81 chr12 33830447 33830680 + 2 NA Intergenic L1ME3|LINE|L1 -191933 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 324-76 chr10 133022936 133023166 + 2 NA Intergenic Intergenic 57517 NR_046231 399829 Hs.252872 NR_046231 ENSG00000240707 LINC01168 - long intergenic non-protein coding RNA 1168 ncRNA 516-120 chr2 40317369 40317716 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 112762 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 207-119 chr19 32147071 32147206 + 2 NA Intergenic L1MDa|LINE|L1 -41222 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 462 chr1 14036784 14037120 + 2 NA Intergenic AluSg|SINE|Alu 287537 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 332-449 chr6 37019876 37020171 + 2 NA intron (NM_173558, intron 9 of 15) AluSz6|SINE|Alu 14368 NM_173558 221472 Hs.509664 NM_173558 ENSG00000146192 FGD2 ZFYVE4 FYVE, RhoGEF and PH domain containing 2 protein-coding 225-98 chr14 95955466 95955605 + 2 NA Intergenic Intergenic 78763 NR_132398 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 240-321 chr4 80748197 80748348 + 2 NA intron (NM_001206997, intron 4 of 6) L2|LINE|L2 -282436 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 227-285 chr5 57910379 57910541 + 2 NA Intergenic AluSz6|SINE|Alu -11298 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 442-309 chr9 24067012 24067424 + 2 NA Intergenic Intergenic -216617 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 231-348 chr8 70927756 70927956 + 2 NA Intergenic Intergenic 258517 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 392-258 chr5 118246418 118246700 + 2 NA intron (NR_104997, intron 2 of 2) L1PA5|LINE|L1 -36015 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 219-163 chr2 35725556 35725690 + 2 NA Intergenic L1MEg|LINE|L1 254218 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 334-273 chr2 95247384 95247622 + 2 NA Intergenic L1PA16|LINE|L1 -26946 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 386-120 chr16 17059338 17059637 + 2 NA Intergenic L1MB3|LINE|L1 -75017 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 198-33 chr11 8412734 8412891 + 2 NA intron (NM_001352399, intron 11 of 11) intron (NM_001352399, intron 11 of 11) -144025 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 263-455 chrX 57828712 57828905 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger 81825 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 290-141 chr14 89871024 89871199 + 2 NA intron (NM_001284269, intron 5 of 5) L1ME3F|LINE|L1 83425 NM_001284268 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 204-259 chr6 153010920 153011083 + 2 NA 3' UTR (NM_012419, exon 5 of 5) 3' UTR (NM_012419, exon 5 of 5) -8186 NM_001301872 54516 Hs.225836 NM_019041 ENSG00000112031 MTRF1L HMRF1L|MRF1L|mtRF1a mitochondrial translational release factor 1 like protein-coding 341-259 chr2 106008521 106008764 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -57046 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 230-172 chr2 62332511 62332735 + 2 NA Intergenic Intergenic 117102 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 320-166 chr15 26308897 26309167 + 2 NA Intergenic LOR1-int|LTR|ERV1 193219 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 348-378 chr4 122967619 122967899 + 2 NA intron (NM_001317799, intron 9 of 10) AluJr|SINE|Alu 44681 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 285-409 chr8 78604823 78605017 + 2 NA 3' UTR (NM_006823, exon 4 of 4) 3' UTR (NM_006823, exon 4 of 4) -46417 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 261-254 chr3 122786961 122787138 + 2 NA intron (NM_001320728, intron 1 of 6) intron (NM_001320728, intron 1 of 6) 6782 NM_001320728 79663 Hs.29169 NM_024610 ENSG00000169087 HSPBAP1 PASS1 HSPB1 associated protein 1 protein-coding 280-443 chr9 93785512 93785755 + 2 NA Intergenic L1MA2|LINE|L1 -33724 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 460-54 chr11 107101213 107101586 + 2 NA Intergenic L1ME1|LINE|L1 -82923 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 497-125 chr2 60186995 60187466 + 2 NA Intergenic L1MC3|LINE|L1 195806 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 250-350 chr5 91797609 91797777 + 2 NA Intergenic Intergenic -414376 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 434-199 chr3 182631088 182631503 + 2 NA Intergenic Intergenic -124171 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 573-62 chr14 47461885 47462423 + 2 NA intron (NM_001113498, intron 1 of 16) AluY|SINE|Alu -118908 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 315-13 chr1 83981180 83981450 + 2 NA intron (NM_001350214, intron 1 of 21) L1MDa|LINE|L1 17817 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 481-77 chr13 65769523 65769892 + 2 NA Intergenic MIR|SINE|MIR -96340 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 598-51 chr16 72652763 72653192 + 2 NA intron (NR_159372, intron 1 of 7) L1MEb|LINE|L1 11993 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 341-491 chr7 41818852 41819049 + 2 NA Intergenic L1MA5|LINE|L1 -115860 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 444-40 chr11 77488900 77489168 + 2 NA Intergenic L1M1|LINE|L1 -14971 NM_002576 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 455-179 chr4 35456897 35457265 + 2 NA Intergenic L1M1|LINE|L1 786858 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 406-289 chr8 26333393 26333747 + 2 NA intron (NM_001177591, intron 2 of 9) intron (NM_001177591, intron 2 of 9) 40354 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 206-54 chr12 32160254 32160454 + 2 NA intron (NR_148725, intron 1 of 9) intron (NR_148725, intron 1 of 9) 53507 NM_001354189 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 467-225 chr5 64488349 64488807 + 2 NA Intergenic Intergenic -17437 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 288-305 chr4 115257349 115257611 + 2 NA Intergenic L1PB4|LINE|L1 -143860 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 995-19 chr8 130832705 130833284 + 2 NA intron (NM_001115, intron 12 of 17) intron (NM_001115, intron 12 of 17) 207915 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 272-189 chr2 61897602 61897802 + 2 NA intron (NM_001321781, intron 1 of 2) AluSq|SINE|Alu -7940 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 395-163 chr2 49094798 49095027 + 2 NA intron (NM_000145, intron 1 of 9) L1MB7|LINE|L1 35309 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 564-193 chr7 108649231 108649656 + 2 NA Intergenic Intergenic 79569 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 421-298 chr8 84934565 84934940 + 2 NA Intergenic (CATACA)n|Simple_repeat|Simple_repeat -172486 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 191-54 chr14 44870495 44870637 + 2 NA Intergenic L1PA7|LINE|L1 -26709 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 292-165 chr16 75280209 75280397 + 2 NA Intergenic AluJb|SINE|Alu -12296 NM_001170715 9564 Hs.479747 NM_014567 ENSG00000050820 BCAR1 CAS|CAS1|CASS1|CRKAS|P130Cas BCAR1 scaffold protein, Cas family member protein-coding 284-78 chr11 133368561 133368823 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 163809 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 447-68 chr13 104540294 104540604 + 2 NA Intergenic Intergenic -925418 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 120-48 chr8 5527217 5527301 + 2 NA Intergenic L2c|LINE|L2 -532345 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 607-100 chr3 109699773 109700291 + 2 NA Intergenic L1MEd|LINE|L1 97204 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 288-396 chr7 22299286 22299569 + 2 NA intron (NM_012294, intron 5 of 25) L1MEf|LINE|L1 57727 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 313-354 chr3 100822970 100823187 + 2 NA intron (NM_001349330, intron 31 of 61) intron (NM_001349330, intron 31 of 61) 113536 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 329-346 chr3 68737 68963 + 2 NA Intergenic MIRb|SINE|MIR 57099 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 640-63 chr2 80969570 80970129 + 2 NA Intergenic L1PA16|LINE|L1 497097 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 229-213 chr2 192139638 192139816 + 2 NA intron (NM_001305134, intron 4 of 9) L3|LINE|CR1 55206 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 338-179 chr15 34495529 34495700 + 2 NA Intergenic CpG 32757 NR_036050 100302160 NR_036050 ENSG00000221649 MIR1233-1 MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1 microRNA 1233-1 ncRNA 379-382 chr9 102745952 102746187 + 2 NA Intergenic Intergenic 226432 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 372-361 chr4 64956417 64956761 + 2 NA intron (NR_033976, intron 2 of 6) MER61-int|LTR|ERV1 47911 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 349-23 chr1 101807788 101808030 + 2 NA intron (NM_001288821, intron 4 of 5) intron (NM_001288821, intron 4 of 5) 39171 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 348-443 chr6 39437612 39437911 + 2 NA intron (NM_001289021, intron 12 of 21) Tigger3b|DNA|TcMar-Tigger -6371 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 296-288 chr3 33335249 33335431 + 2 NA intron (NR_146129, intron 4 of 15) L1MEf|LINE|L1 57898 NR_146133 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 329-33 chr1 214196485 214196795 + 2 NA Intergenic MER121|DNA|hAT? -84519 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 269-428 chr9 85297902 85298129 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 444014 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 264-114 chr13 85459009 85459230 + 2 NA intron (NR_046989, intron 1 of 3) L1MD1|LINE|L1 95516 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 289-19 chr1 151931239 151931462 + 2 NA Intergenic MER57A-int|LTR|ERV1 -21839 NM_053055 117145 Hs.164070 NM_053055 ENSG00000159445 THEM4 CTMP thioesterase superfamily member 4 protein-coding 334-578 chr9 124086503 124086674 + 2 NA Intergenic AluSz|SINE|Alu 74820 NM_004789 9355 Hs.696425 NM_004789 ENSG00000106689 LHX2 LH2|hLhx2 LIM homeobox 2 protein-coding 614-121 chr7 88035653 88036221 + 2 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 101686 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 347-411 chr5 124298190 124298427 + 2 NA intron (NR_125774, intron 4 of 5) L2c|LINE|L2 140212 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 380-363 chr7 38745182 38745391 + 2 NA intron (NM_014396, intron 23 of 28) intron (NM_014396, intron 23 of 28) -58197 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 446-60 chr11 38578230 38578499 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 67992 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 353-430 chr5 156899311 156899572 + 2 NA Intergenic L1MB4|LINE|L1 49146 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 298-335 chr4 100952358 100952594 + 2 NA Intergenic Intergenic -277363 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 376-410 chr8 122906072 122906369 + 2 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 119552 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 324-317 chr20 48357614 48357901 + 2 NA Intergenic Intergenic -2154 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 283-367 chr5 82535136 82535414 + 2 NA Intergenic MamRep137|DNA|TcMar? 255813 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 216-336 chr8 85259552 85259721 + 2 NA intron (NM_198584, intron 3 of 6) MamTip2|DNA|hAT-Tip100 14178 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 380-220 chr20 45714189 45714428 + 2 NA Intergenic L1PA11|LINE|L1 -8039 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 249-446 chr9 71213981 71214140 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -92439 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 197-31 chr10 118552660 118552826 + 2 NA Intergenic L1ME3|LINE|L1 42905 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 397-206 chr3 86745771 86746029 + 2 NA Intergenic Intergenic 245249 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 391-356 chr8 106821153 106821494 + 2 NA Intergenic Intergenic -51079 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 181-159 chr8 88016880 88017031 + 2 NA Intergenic MIR3|SINE|MIR -142940 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 238-168 chr2 52482721 52482900 + 2 NA Intergenic Intergenic 112162 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 305-297 chr2 237657154 237657413 + 2 NA intron (NM_001137550, intron 1 of 23) L1M7|LINE|L1 29696 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 245-348 chr8 84803825 84803986 + 2 NA intron (NM_001354322, intron 3 of 6) intron (NM_001354322, intron 3 of 6) 97978 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 265-179 chr2 65403462 65403699 + 2 NA intron (NM_181784, intron 1 of 5) intron (NM_181784, intron 1 of 5) 29019 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 125-17 chr16 7874250 7874327 + 2 NA Intergenic L1MB7|LINE|L1 541443 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 245-182 chr2 27527647 27527788 + 2 NA Intergenic L1MD3|LINE|L1 30878 NM_001486 2646 Hs.89771 NM_001486 ENSG00000084734 GCKR FGQTL5|GKRP glucokinase regulator protein-coding 365-132 chr15 56601852 56602201 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie 132060 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 642-77 chr4 20806014 20806628 + 2 NA intron (NM_025221, intron 2 of 7) L1M7|LINE|L1 44347 NM_147181 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 542-148 chr4 54995011 54995399 + 2 NA Intergenic Intergenic 130390 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 319-74 chr10 91090118 91090312 + 2 NA Intergenic Intergenic 44407 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 399-124 chr18 9745211 9745493 + 2 NA intron (NM_006868, intron 1 of 6) L1MB5|LINE|L1 37051 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 293-68 chr11 96909336 96909586 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger 401036 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 446-259 chr5 178720809 178721166 + 2 NA intron (NM_005649, intron 4 of 4) L1MC5a|LINE|L1 9672 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 399-250 chr5 62374104 62374458 + 2 NA intron (NM_001098511, intron 18 of 20) MER58A|DNA|hAT-Charlie 29624 NM_001348076 27292 Hs.731665 NM_014473 ENSG00000086189 DIMT1 DIM1|DIMT1L|HSA9761|HUSSY5 DIMT1 rRNA methyltransferase and ribosome maturation factor protein-coding 593-5 chr1 74975035 74975433 + 2 NA Intergenic HAL1b|LINE|L1 -153200 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 376-365 chr7 30230678 30230891 + 2 NA Intergenic Intergenic -53813 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 319-100 chr11 110973410 110973668 + 2 NA Intergenic Intergenic 123779 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 154-54 chr2 236681833 236681981 + 2 NA Intergenic MER53|DNA|hAT 112082 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 381-175 chr19 56654785 56655143 + 2 NA intron (NR_163263, intron 4 of 4) intron (NR_163263, intron 4 of 4) 11805 NM_001193628 147670 Hs.336588 NM_001193628 ENSG00000268182 SMIM17 - small integral membrane protein 17 protein-coding 390-333 chr6 118625707 118625975 + 2 NA intron (NM_001042475, intron 2 of 12) HERV30-int|LTR|ERV1 25750 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 321-458 chr5 40981179 40981472 + 2 NA intron (NM_000587, intron 17 of 17) intron (NM_000587, intron 17 of 17) 71828 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 289-263 chr20 41990501 41990674 + 2 NA Intergenic MIRb|SINE|MIR -372210 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 293-407 chr7 56075238 56075391 + 2 NA intron (NM_001146333, intron 4 of 7) Charlie10|DNA|hAT-Charlie 11028 NM_015411 25870 Hs.279696 NM_015411 ENSG00000129103 SUMF2 pFGE sulfatase modifying factor 2 protein-coding 330-567 chrX 93441327 93441540 + 2 NA Intergenic L1MA4A|LINE|L1 232145 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 182-40 chr12 80229051 80229170 + 2 NA intron (NM_001368062, intron 12 of 62) intron (NM_001368062, intron 12 of 62) 19657 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 257-287 chr4 21035757 21035988 + 2 NA intron (NM_147182, intron 2 of 8) LTR16A2|LTR|ERVL -51863 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 226-270 chr5 12464756 12464966 + 2 NA Intergenic Intergenic -109996 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 325-338 chr3 20556698 20556934 + 2 NA Intergenic Intergenic 214348 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 415-293 chr8 128271241 128271562 + 2 NA Intergenic L2a|LINE|L2 121285 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 372-373 chr4 106690289 106690555 + 2 NA Intergenic Intergenic 256798 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 276-437 chr7 153926884 153927053 + 2 NA intron (NR_157195, intron 1 of 24) intron (NR_157195, intron 1 of 24) 39634 NM_001039350 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 518-14 chr1 218506509 218506915 + 2 NA intron (NR_031644, intron 2 of 6) THE1C|LTR|ERVL-MaLR -3383 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 332-485 chr7 51650543 51650828 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -257429 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 333-208 chr18 67291038 67291299 + 2 NA Intergenic Intergenic 209584 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 251-225 chr3 6413893 6414048 + 2 NA Intergenic MIRc|SINE|MIR 391479 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 319-366 chr4 53350097 53350351 + 2 NA intron (NM_152540, intron 2 of 8) intron (NM_152540, intron 2 of 8) 15837 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 374-283 chr4 94649896 94650207 + 2 NA intron (NM_006457, intron 9 of 12) intron (NM_006457, intron 9 of 12) 107482 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 672-65 chr20 23358544 23359110 + 2 NA promoter-TSS (NR_109884) promoter-TSS (NR_109884) -700 NR_109884 100505683 Hs.140295 NR_109884 ENSG00000232645 LINC01431 - long intergenic non-protein coding RNA 1431 ncRNA 358-384 chr5 118076514 118076800 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -205917 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 468-251 chr5 62975593 62975921 + 2 NA Intergenic MIR3|SINE|MIR 396938 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 458-130 chr2 71976144 71976508 + 2 NA Intergenic L1MB5|LINE|L1 171536 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 433-179 chr3 114661469 114661739 + 2 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) -36659 NM_001164346 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 241-24 chr1 206658651 206658836 + 2 NA Intergenic Intergenic 23207 NM_003582 8444 Hs.164267 NM_003582 ENSG00000143479 DYRK3 DYRK5|RED|REDK|hYAK3-2 dual specificity tyrosine phosphorylation regulated kinase 3 protein-coding 442-41 chr11 17170495 17170815 + 2 NA intron (NM_002645, intron 1 of 32) intron (NM_002645, intron 1 of 32) 37331 NM_001321378 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 295-511 chrX 63848016 63848259 + 2 NA Intergenic Intergenic -62050 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 312-559 chrX 48101301 48101591 + 2 NA Intergenic MLT2B3|LTR|ERVL -6536 NR_028366 280657 Hs.511998 NM_173357 SSX6P SSX6|SSXP2|dJ54B20.1|psiSSX2 SSX family member 6, pseudogene pseudo 329-438 chr5 5042150 5042322 + 2 NA intron (NR_026994, intron 2 of 6) X7C_LINE|LINE|CR1 7877 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 359-484 chr8 119096548 119096823 + 2 NA intron (NM_001324095, intron 5 of 7) L1ME3A|LINE|L1 -27903 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 554-18 chr1 191472075 191472425 + 2 NA Intergenic Intergenic -243752 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 224-123 chr18 4222588 4222731 + 2 NA intron (NM_001242761, intron 1 of 11) L1MEd|LINE|L1 -41943 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 645-28 chr14 56043296 56043781 + 2 NA Intergenic Intergenic -74873 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 310-151 chr14 104660793 104661048 + 2 NA TTS (NR_135293) TTS (NR_135293) 4638 NR_135293 101929634 Hs.532502 NR_135293 ENSG00000260792 LINC02280 - long intergenic non-protein coding RNA 2280 ncRNA 198-18 chr10 15062324 15062458 + 2 NA intron (NM_018324, intron 5 of 8) intron (NM_018324, intron 5 of 8) 18448 NM_001039702 55301 Hs.24309 NM_018324 ENSG00000152463 OLAH AURA1|SAST|TE2|THEDC1 oleoyl-ACP hydrolase protein-coding 154-40 chr17 61187292 61187397 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 180360 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 305-206 chr17 79550442 79550630 + 2 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) -34388 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 645-3 chr1 34154545 34155107 + 2 NA intron (NM_052896, intron 1 of 69) AluSg|SINE|Alu 10448 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 163-103 chr5 76571730 76571858 + 2 NA intron (NM_006633, intron 4 of 35) L1MD2|LINE|L1 24385 NM_001285460 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 550-24 chr10 25388537 25389044 + 2 NA intron (NM_020752, intron 2 of 10) MER52D|LTR|ERV1 -212514 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 280-330 chr5 110155493 110155666 + 2 NA Intergenic L1M1|LINE|L1 272397 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 204-120 chr17 63000728 63000896 + 2 NA intron (NM_025185, intron 1 of 25) intron (NM_025185, intron 1 of 25) 34577 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 251-182 chr2 123099518 123099754 + 2 NA Intergenic Intergenic -26155 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 442-285 chr8 62927580 62927904 + 2 NA intron (NR_130764, intron 5 of 6) LTR82B|LTR|ERVL -50119 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 438-88 chr16 82587198 82587573 + 2 NA Intergenic Intergenic -39584 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 416-114 chr14 24588400 24588722 + 2 NA Intergenic L1PB1|LINE|L1 -12311 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 438-124 chr2 79574459 79574873 + 2 NA intron (NM_001282598, intron 1 of 17) L1PA15|LINE|L1 51483 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 142-76 chr8 63383302 63383433 + 2 NA Intergenic Intergenic -82482 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 181-146 chr7 13019693 13019830 + 2 NA Intergenic L1MC5|LINE|L1 332128 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 547-239 chr8 69316770 69317204 + 2 NA Intergenic Intergenic 131257 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 464-113 chr2 34647567 34647895 + 2 NA Intergenic Intergenic -29826 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 294-25 chr1 237842945 237843201 + 2 NA Intergenic L1PA14|LINE|L1 -19102 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 331-331 chr22 40113982 40114184 + 2 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) -63842 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 581-112 chr4 39662985 39663487 + 2 NA Intergenic L1MEc|LINE|L1 -24371 NM_174921 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 324-391 chr4 61332530 61332731 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 130458 NM_001371342 345-527 chr8 104608691 104608997 + 2 NA Intergenic L1PA15|LINE|L1 -19820 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 405-125 chr19 37512671 37513004 + 2 NA intron (NM_001013659, intron 2 of 7) L1MC4|LINE|L1 -5750 NR_110723 101927720 Hs.18070 NR_110723 ENSG00000266916 ZNF793-AS1 - ZNF793 antisense RNA 1 (head to head) ncRNA 537-217 chr6 80141328 80141770 + 2 NA intron (NR_134945, intron 3 of 10) intron (NR_134945, intron 3 of 10) 34878 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 221-63 chr12 100612182 100612327 + 2 NA intron (NM_001303130, intron 5 of 8) intron (NM_001303130, intron 5 of 8) 18636 NM_001303131 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 256-275 chr3 145652519 145652733 + 2 NA Intergenic Intergenic 416559 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 351-285 chr3 4770333 4770680 + 2 NA intron (NM_001168272, intron 45 of 60) intron (NM_001168272, intron 45 of 60) -18916 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 206-108 chr2 19570617 19570812 + 2 NA Intergenic Intergenic -212091 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 229-365 chr7 84362094 84362279 + 2 NA Intergenic FLAM_A|SINE|Alu -167397 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 349-470 chr7 17629348 17629532 + 2 NA Intergenic Intergenic -70531 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 176-27 chr14 67101136 67101252 + 2 NA intron (NM_001024218, intron 12 of 21) intron (NM_001024218, intron 12 of 21) -88246 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 359-400 chr5 85774233 85774476 + 2 NA Intergenic L1MD2|LINE|L1 -508090 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 228-151 chr2 13351306 13351479 + 2 NA Intergenic Intergenic -344379 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 418-83 chr16 3308206 3308549 + 2 NA 5' UTR (NM_001352497, exon 2 of 6) 5' UTR (NM_001352497, exon 2 of 6) 2165 NM_001324041 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 250-70 chr11 67552125 67552360 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -28796 NM_016366 51475 Hs.278984 NM_016366 ENSG00000167791 CABP2 DFNB93 calcium binding protein 2 protein-coding 689-56 chr20 36117579 36118019 + 2 NA intron (NM_001258329, intron 2 of 22) intron (NM_001258329, intron 2 of 22) 25089 NM_001258329 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 194-49 chr13 66812317 66812453 + 2 NA intron (NM_020403, intron 2 of 3) intron (NM_020403, intron 2 of 3) -12784 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 366-41 chr10 18809829 18810149 + 2 NA Intergenic Intergenic 150558 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 243-441 chr8 52026254 52026444 + 2 NA Intergenic HAL1|LINE|L1 -127163 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 679-22 chr11 91111293 91111779 + 2 NA Intergenic Intergenic -242334 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 378-5 chr1 44173983 44174191 + 2 NA Intergenic MER4-int|LTR|ERV1 -32456 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 451-141 chr3 24400678 24401033 + 2 NA intron (NM_001354709, intron 1 of 10) intron (NM_001354709, intron 1 of 10) -93232 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 579-46 chr16 23173932 23174307 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -8626 NM_001039 6340 Hs.371727 NM_001039 ENSG00000166828 SCNN1G BESC3|ENaCg|ENaCgamma|LDLS2|PHA1|SCNEG sodium channel epithelial 1 gamma subunit protein-coding 406-128 chr19 24379439 24379803 + 2 NA Intergenic ALR/Alpha|Satellite|centr -216174 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 204-184 chr22 33191933 33192085 + 2 NA Intergenic Intergenic 83480 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 269-51 chr10 106925996 106926154 + 2 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 238631 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 625-65 chr22 44812155 44812481 + 2 NA intron (NM_001017526, intron 5 of 12) intron (NM_001017526, intron 5 of 12) 59760 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 484-68 chr14 87255991 87256371 + 2 NA Intergenic Intergenic 350403 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 309-112 chr12 65743379 65743673 + 2 NA Intergenic Intergenic -80934 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 592-14 chr10 36255753 36256157 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 477653 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 275-183 chr2 44736737 44737003 + 2 NA intron (NM_024766, intron 7 of 10) L1MEc|LINE|L1 202018 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 226-200 chr20 42551875 42552043 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -133524 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 452-93 chr15 87237279 87237660 + 2 NA Intergenic L1MA6|LINE|L1 -249043 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 619-23 chr10 100369923 100370526 + 2 NA Intergenic AluSx1|SINE|Alu -3352 NR_026762 90271 Hs.628088 NR_026762 ENSG00000235823 OLMALINC C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS oligodendrocyte maturation-associated long intergenic non-coding RNA ncRNA 268-21 chr1 215012097 215012328 + 2 NA intron (NM_001017424, intron 1 of 6) L1ME1|LINE|L1 6670 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 407-198 chr3 78339222 78339557 + 2 NA Intergenic Intergenic -290426 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 235-364 chr8 114280239 114280386 + 2 NA Intergenic Intergenic -843373 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 223-367 chr9 87753703 87753856 + 2 NA Intergenic Intergenic -19136 NR_027917 392360 Hs.690450 NM_001023564 ENSG00000188029 CTSL3P CTSL3|HCTSL-s cathepsin L family member 3, pseudogene pseudo 153-28 chr13 60923717 60923857 + 2 NA Intergenic L2a|LINE|L2 250832 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 335-395 chr4 123458946 123459264 + 2 NA Intergenic Intergenic 59565 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 358-513 chr9 37210816 37211051 + 2 NA intron (NM_001289120, intron 2 of 8) (GTCTCT)n|Simple_repeat|Simple_repeat 90335 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 725-38 chr2 239735629 239736314 + 2 NA Intergenic Intergenic -26889 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 337-245 chr2 38184246 38184448 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 53242 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 381-205 chr2 129002374 129002692 + 2 NA Intergenic Intergenic 137933 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 325-525 chr8 18261665 18261841 + 2 NA Intergenic LTR49-int|LTR|ERV1 40085 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 367-180 chr19 29236832 29237020 + 2 NA Intergenic L1M4a1|LINE|L1 -23775 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 358-432 chr7 33785183 33785490 + 2 NA Intergenic MIRb|SINE|MIR -119579 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 267-387 chr7 29327285 29327468 + 2 NA intron (NM_001293070, intron 2 of 13) MER5A|DNA|hAT-Charlie -118406 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 518-213 chr4 116168049 116168481 + 2 NA Intergenic MER6B|DNA|TcMar-Tigger -131460 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 358-260 chr20 45037675 45037888 + 2 NA intron (NM_006282, intron 10 of 10) intron (NM_006282, intron 10 of 10) 63346 NM_001322799 3787 Hs.117780 NM_002251 ENSG00000124134 KCNS1 Kv9.1 potassium voltage-gated channel modifier subfamily S member 1 protein-coding 220-256 chr4 62008743 62008911 + 2 NA intron (NM_001371343, intron 20 of 23) Tigger3a|DNA|TcMar-Tigger 152938 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 262-46 chr10 53676881 53677089 + 2 NA Intergenic Intergenic -809245 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 223-178 chr2 231127800 231127985 + 2 NA intron (NM_001191037, intron 16 of 23) Tigger15a|DNA|TcMar-Tigger -2850 NM_000867 3357 Hs.421649 NM_000867 ENSG00000135914 HTR2B 5-HT(2B)|5-HT-2B|5-HT2B 5-hydroxytryptamine receptor 2B protein-coding 316-126 chr12 31942273 31942519 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 -17019 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 399-221 chr3 189768068 189768355 + 2 NA intron (NM_003722, intron 3 of 13) MIRb|SINE|MIR -21448 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 386-247 chr3 147250827 147251122 + 2 NA Intergenic Intergenic 141456 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 277-264 chr3 102768048 102768246 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 333132 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 490-174 chr22 18996522 18996945 + 2 NA intron (NR_110533, intron 4 of 5) MIRb|SINE|MIR -21101 NR_024159 25787 Hs.106311 NR_024159 DGCR9 DGS-A DiGeorge syndrome critical region gene 9 ncRNA 364-392 chr6 137533847 137534102 + 2 NA Intergenic Intergenic -39580 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 251-109 chr15 57103246 57103432 + 2 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -116091 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 178-118 chr6 48344425 48344561 + 2 NA Intergenic Intergenic -275804 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 501-33 chr10 122968842 122969199 + 2 NA Intergenic L1PA13|LINE|L1 -11381 NM_001363531 118672 Hs.281004 NM_153336 ENSG00000179988 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 458-3 chr1 163499931 163500240 + 2 NA Intergenic L1MEg|LINE|L1 -76894 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 345-69 chr10 67621100 67621333 + 2 NA intron (NM_001127384, intron 2 of 17) MER5B|DNA|hAT-Charlie 44444 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 567-118 chr3 101220268 101220665 + 2 NA Intergenic Intergenic 100109 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 322-358 chr3 173957528 173957836 + 2 NA intron (NM_001365928, intron 4 of 6) MLT1J|LTR|ERVL-MaLR -36886 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 359-399 chr5 84888742 84889015 + 2 NA Intergenic L1MA2|LINE|L1 -503998 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 409 chr1 68630774 68631005 + 2 NA Intergenic Intergenic -133807 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 183-152 chr8 19280231 19280411 + 2 NA Intergenic LTR79|LTR|ERVL -33249 NR_156444 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 509-259 chr8 113272668 113273143 + 2 NA intron (NM_001363185, intron 3 of 66) L1MA4|LINE|L1 104247 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 316-15 chr1 83986450 83986653 + 2 NA intron (NM_001350214, intron 1 of 21) L1MB2|LINE|L1 12581 NM_001350215 79739 Hs.445826 NM_024686 ENSG00000137941 TTLL7 - tubulin tyrosine ligase like 7 protein-coding 425-258 chr6 62832500 62832777 + 2 NA Intergenic Intergenic 487339 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 466-196 chr5 16281140 16281546 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 101102 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 224-96 chr14 88112523 88112738 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -86318 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 393-57 chr11 97686563 97686838 + 2 NA Intergenic MIRb|SINE|MIR 1178275 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 215-340 chr9 79968324 79968488 + 2 NA intron (NR_121213, intron 1 of 2) MLT1D|LTR|ERVL-MaLR -6617 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 314-110 chr11 125801109 125801279 + 2 NA Intergenic LTR108a_Mam|LTR|ERVL 13067 NM_001129883 100169851 Hs.131278 NM_001129883 ENSG00000236027 PATE3 HEL-127|PATE-DJ prostate and testis expressed 3 protein-coding 267-307 chr4 179396442 179396631 + 2 NA Intergenic L1MEf|LINE|L1 -1488600 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 256-338 chr5 142786169 142786389 + 2 NA intron (NM_001349547, intron 1 of 21) AluJr|SINE|Alu 15052 NM_001349547 23092 Hs.654668 NM_015071 ENSG00000145819 ARHGAP26 GRAF|GRAF1|OPHN1L|OPHN1L1 Rho GTPase activating protein 26 protein-coding 425-49 chr11 20377694 20378040 + 2 NA intron (NM_001098521, intron 4 of 5) L3|LINE|CR1 -9663 NM_001145166 10196 Hs.152337 NM_005788 ENSG00000185238 PRMT3 HRMT1L3 protein arginine methyltransferase 3 protein-coding 630-156 chrX 10443440 10443891 + 2 NA Intergenic Intergenic 123938 NM_001193281 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 379-377 chr9 79325666 79325862 + 2 NA Intergenic Intergenic -180098 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 301-472 chr9 4101107 4101280 + 2 NA intron (NM_001042413, intron 4 of 10) MIRc|SINE|MIR 50990 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 341-568 chr9 108676687 108676917 + 2 NA Intergenic Intergenic 179184 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 446-42 chr10 48644818 48645195 + 2 NA intron (NM_001347738, intron 2 of 10) L1MB7|LINE|L1 7496 NM_001256025 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 346-287 chr21 32927029 32927208 + 2 NA Intergenic L1M6B|LINE|L1 -31770 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 260-465 chrX 36943319 36943552 + 2 NA Intergenic Intergenic -64924 NM_001013736 442444 Hs.535216 NM_001013736 ENSG00000198173 FAM47C - family with sequence similarity 47 member C protein-coding 240-345 chr5 27511321 27511552 + 2 NA Intergenic Intergenic 39144 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 258-222 chr20 7181165 7181379 + 2 NA intron (NR_110609, intron 5 of 7) L1MB5|LINE|L1 72930 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 729-5 chr1 158928787 158929350 + 2 NA Intergenic MER57B1|LTR|ERV1 -2484 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 379-240 chr4 78173609 78173876 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) -115243 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 321-265 chr19 44324545 44324821 + 2 NA Intergenic L1MCc|LINE|L1 -19658 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 411-75 chr12 116367713 116368055 + 2 NA Intergenic AluSx1|SINE|Alu 60434 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 371-272 chr4 53941317 53941684 + 2 NA Intergenic L1PREC2|LINE|L1 45782 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 515-20 chr10 22056160 22056550 + 2 NA Intergenic L2c|LINE|L2 -52625 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 310-525 chr8 104519240 104519483 + 2 NA intron (NM_001135703, intron 1 of 5) intron (NM_001135703, intron 1 of 5) -34896 NR_030330 693127 NR_030330 ENSG00000208032 MIR548A3 MIRN548A3 microRNA 548a-3 ncRNA 528-62 chr12 55643587 55643932 + 2 NA Intergenic Intergenic 6867 NM_206899 121130 Hs.554551 NM_206899 ENSG00000175398 OR10P1 OR10P1P|OR10P2P|OR10P3P|OR12-7|OST701 olfactory receptor family 10 subfamily P member 1 protein-coding 461-4 chr1 64248105 64248515 + 2 NA intron (NM_001366232, intron 8 of 9) intron (NM_001366232, intron 8 of 9) 44687 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 455-52 chr11 83546883 83547256 + 2 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 135356 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 252-185 chr2 49559052 49559272 + 2 NA Intergenic Intergenic -404635 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 300-147 chr16 79434616 79434837 + 2 NA Intergenic Intergenic 166011 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 515-29 chr10 118389682 118390107 + 2 NA Intergenic L1MB4|LINE|L1 32786 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 534-42 chr11 34714470 34714818 + 2 NA Intergenic L1MEc|LINE|L1 82078 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 313-574 chrX 98185040 98185212 + 2 NA Intergenic Intergenic -620591 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 361-266 chr21 42346765 42347096 + 2 NA intron (NM_005423, intron 3 of 3) intron (NM_005423, intron 3 of 3) 4064 NM_005423 7032 Hs.2979 NM_005423 ENSG00000160181 TFF2 SML1|SP trefoil factor 2 protein-coding 426-84 chr15 59391543 59391834 + 2 NA Intergenic Intergenic -18817 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 367-102 chr12 130467161 130467497 + 2 NA intron (NM_015347, intron 4 of 19) LTR8|LTR|ERV1 129442 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 342-462 chr6 84242415 84242718 + 2 NA Intergenic LTR16E2|LTR|ERVL -14923 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 270-91 chr12 111575926 111576185 + 2 NA intron (NM_001310121, intron 1 of 25) AluSg4|SINE|Alu 23260 NM_002973 6311 Hs.76253 NM_002973 ENSG00000204842 ATXN2 ATX2|SCA2|TNRC13 ataxin 2 protein-coding 266-275 chr4 34039470 34039668 + 2 NA intron (NR_125902, intron 1 of 4) Tigger3b|DNA|TcMar-Tigger 324 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 370-62 chr10 100641298 100641574 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -93960 NM_001304569 5076 Hs.155644 NM_000278 ENSG00000075891 PAX2 FSGS7|PAPRS paired box 2 protein-coding 403-98 chr14 58545430 58545686 + 2 NA intron (NM_001329944, intron 31 of 31) intron (NM_001329944, intron 31 of 31) -88510 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 288-405 chr7 48760462 48760744 + 2 NA Intergenic Intergenic -163944 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 469-147 chr2 219695081 219695406 + 2 NA Intergenic L2c|LINE|L2 67613 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 526-250 chr8 120521168 120521520 + 2 NA intron (NM_022045, intron 20 of 21) HAL1|LINE|L1 75925 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 307-456 chr7 77285457 77285626 + 2 NA intron (NM_020879, intron 15 of 18) MIRc|SINE|MIR -85722 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 226-125 chr17 35128645 35128776 + 2 NA TTS (NM_018096) TTS (NM_018096) 7095 NM_017559 54752 Hs.120369 NM_017559 ENSG00000073598 FNDC8 - fibronectin type III domain containing 8 protein-coding 341-475 chr6 148054291 148054624 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -217871 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 507-279 chr9 111505926 111506320 + 2 NA Intergenic AluSx3|SINE|Alu -19056 NM_133464 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 266-37 chr10 54645925 54646111 + 2 NA intron (NR_134503, intron 4 of 5) MIR|SINE|MIR -38061 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 354-381 chr5 116328320 116328630 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 46095 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 525-48 chr11 118080048 118080513 + 2 NA intron (NM_001173552, intron 1 of 11) L2c|LINE|L2 3202 NM_019894 56649 Hs.161985 NM_019894 ENSG00000137648 TMPRSS4 CAPH2|MT-SP2|TMPRSS3 transmembrane serine protease 4 protein-coding 321-2 chr1 19295245 19295553 + 2 NA non-coding (NR_037847, exon 1 of 1) non-coding (NR_037847, exon 1 of 1) 337 NR_037847 100506730 NR_037847 LOC100506730 - uncharacterized LOC100506730 ncRNA 336-288 chr2 133671965 133672160 + 2 NA Intergenic L2a|LINE|L2 -103599 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 426-4 chr1 38223477 38223707 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -8825 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 332-281 chr2 214615692 214615960 + 2 NA Intergenic Intergenic 105644 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 266-215 chr20 16601983 16602152 + 2 NA Intergenic Intergenic -28619 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 350-441 chr6 65966888 65967140 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 179135 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 205-194 chr3 169951109 169951292 + 2 NA intron (NR_027622, intron 1 of 1) MLT1K|LTR|ERVL-MaLR 15534 NR_024409 100128164 Hs.633070 NR_024409 ENSG00000239219 LOC100128164 - four and a half LIM domains 1 pseudogene pseudo 225-274 chr5 38734615 38734807 + 2 NA intron (NR_109951, intron 3 of 3) intron (NR_109951, intron 3 of 3) -14438 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 260-29 chr1 200044798 200045011 + 2 NA intron (NM_205860, intron 3 of 7) intron (NM_205860, intron 3 of 7) 2079 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 465-160 chr20 56291291 56291619 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 42723 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 304-412 chr5 38059135 38059333 + 2 NA intron (NR_147009, intron 2 of 2) L1M4a1|LINE|L1 33537 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 389-101 chr14 56713533 56713819 + 2 NA Intergenic Intergenic 91991 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 136-29 chr15 86495761 86495866 + 2 NA intron (NM_152336, intron 18 of 24) L1M5|LINE|L1 -178845 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 362-74 chr10 104178471 104178721 + 2 NA intron (NM_025145, intron 19 of 37) HAL1|LINE|L1 40287 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 211-273 chr7 30838471 30838641 + 2 NA intron (NR_037598, intron 9 of 19) MER58A|DNA|hAT-Charlie 67139 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 269-48 chr10 74421447 74421705 + 2 NA intron (NM_001369124, intron 6 of 9) L1MC3|LINE|L1 107748 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 284-230 chr20 18200617 18200889 + 2 NA Intergenic L1M2|LINE|L1 55654 NR_028402 57325 Hs.488051 NM_020536 ENSG00000149474 KAT14 ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1 lysine acetyltransferase 14 protein-coding 226-39 chr10 47422967 47423114 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -8565 NR_134499 105378292 Hs.131331 NR_134499 LOC105378292 - uncharacterized LOC105378292 ncRNA 285-410 chr8 79278886 79279136 + 2 NA Intergenic L1PA16|LINE|L1 -53177 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 363-489 chrX 99987207 99987415 + 2 NA Intergenic Intergenic 422962 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 330-214 chr17 71145820 71146037 + 2 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 56251 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 296-82 chr11 114940522 114940756 + 2 NA Intergenic Intergenic 262112 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 436-192 chr3 114004156 114004430 + 2 NA intron (NM_001353767, intron 9 of 14) intron (NM_001353767, intron 9 of 14) 52233 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 345-302 chr2 237017469 237017774 + 2 NA Intergenic Intergenic 38546 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 218-364 chrX 77773159 77773302 + 2 NA intron (NM_000489, intron 1 of 34) intron (NM_000489, intron 1 of 34) 12986 NM_138270 546 Hs.533526 NM_000489 ENSG00000085224 ATRX JMS|MRX52|RAD54|RAD54L|XH2|XNP|ZNF-HX ATRX chromatin remodeler protein-coding 230-178 chr2 117728700 117728884 + 2 NA Intergenic Intergenic -85899 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 299-222 chr2 126259727 126259908 + 2 NA Intergenic Intergenic -141832 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 171-18 chr11 19888855 19888999 + 2 NA intron (NM_001244963, intron 6 of 39) intron (NM_001244963, intron 6 of 39) -128844 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 267-417 chr8 62555114 62555348 + 2 NA intron (NM_001304533, intron 1 of 6) L1MEd|LINE|L1 306377 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 345-164 chr14 87844917 87845230 + 2 NA Intergenic Intergenic 148109 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 494-171 chr3 54361660 54361977 + 2 NA intron (NM_018398, intron 3 of 37) intron (NM_018398, intron 3 of 37) 239266 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 283-402 chr6 160583771 160584002 + 2 NA intron (NM_005577, intron 26 of 38) L1ME2|LINE|L1 -72762 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 477-148 chr2 47537514 47537810 + 2 NA intron (NM_022055, intron 1 of 1) intron (NM_022055, intron 1 of 1) 10125 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 441-217 chr6 12270692 12270987 + 2 NA Intergenic L1M1|LINE|L1 -19522 NM_001168319 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 191-121 chr20 21957909 21958064 + 2 NA Intergenic Intergenic -96104 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 233-83 chr13 50538646 50538816 + 2 NA Intergenic L1MB7|LINE|L1 -11282 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 505-135 chr2 29302679 29303145 + 2 NA intron (NM_004304, intron 8 of 28) L1PA17|LINE|L1 -79012 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 355 chr1 19499793 19500006 + 2 NA Intergenic Intergenic -14360 NM_004930 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 411-105 chr15 98827183 98827446 + 2 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 42888 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 216-250 chr4 64757571 64757723 + 2 NA Intergenic L1ME1|LINE|L1 246853 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 441-40 chr11 39486702 39486997 + 2 NA Intergenic Intergenic 806281 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 196-233 chr7 11877526 11877652 + 2 NA Intergenic Intergenic -45391 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 213-213 chr4 95860783 95860970 + 2 NA Intergenic Intergenic 20783 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 551-35 chr11 94923842 94924370 + 2 NA Intergenic LTR16A1|LTR|ERVL 49450 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 387-31 chr10 7885430 7885726 + 2 NA intron (NM_031923, intron 2 of 6) L1MC4|LINE|L1 67073 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 359-112 chr12 29468303 29468558 + 2 NA intron (NM_001353179, intron 16 of 25) Charlie11|DNA|hAT-Charlie 31263 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 236-76 chr12 1748210 1748387 + 2 NA intron (NM_024551, intron 1 of 7).2 AluY|SINE|Alu 57228 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 130-89 chrX 12616984 12617089 + 2 NA intron (NM_001368400, intron 3 of 15) intron (NM_001368400, intron 3 of 15) 118356 NM_001368400 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 325-561 chr8 138631997 138632296 + 2 NA intron (NM_152888, intron 49 of 64) MIRb|SINE|MIR -134416 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 460-209 chr3 175378419 175378838 + 2 NA intron (NM_207015, intron 5 of 13) L1ME2|LINE|L1 9088 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 523-191 chr3 183654611 183654996 + 2 NA intron (NM_001349428, intron 4 of 8) L1MC5a|LINE|L1 19180 NM_001349423 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 330-417 chr5 41232359 41232631 + 2 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) -18963 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 147-94 chrX 84987544 84987641 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -16285 NM_198450 139322 Hs.512181 NM_198450 ENSG00000155008 APOOL CXorf33|FAM121A|MICOS27|Mic27|UNQ8193 apolipoprotein O like protein-coding 377-112 chr14 26098943 26099222 + 2 NA Intergenic L2c|LINE|L2 454348 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 270-187 chr2 106812205 106812389 + 2 NA TTS (NM_001142352) TTS (NM_001142352) 73731 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 188-57 chr14 86806681 86806837 + 2 NA Intergenic L1M5|LINE|L1 -99019 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 314-197 chr15 81965791 81965973 + 2 NA Intergenic L1M7|LINE|L1 80136 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 361-149 chr15 25593676 25593961 + 2 NA Intergenic Tigger17c|DNA|TcMar-Tigger -154762 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 268-188 chr2 42298659 42298801 + 2 NA intron (NM_001145076, intron 12 of 21) intron (NM_001145076, intron 12 of 21) 61308 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 443-101 chr15 49866291 49866571 + 2 NA exon (NM_024837, exon 26 of 28) exon (NM_024837, exon 26 of 28) 245383 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 415-129 chr2 113881078 113881306 + 2 NA intron (NR_110174, intron 1 of 4) intron (NR_110174, intron 1 of 4) -8742 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 157-132 chr8 126540041 126540165 + 2 NA Intergenic Intergenic 18375 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 378-253 chr20 7654486 7654828 + 2 NA Intergenic Intergenic 283049 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 172-110 chr6 40258053 40258160 + 2 NA Intergenic Intergenic 97900 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 262-230 chr2 160563400 160563654 + 2 NA Intergenic Intergenic -69720 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 541-225 chr7 135265604 135266062 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 33854 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 282-173 chr18 3220253 3220449 + 2 NA promoter-TSS (NM_003803) promoter-TSS (NM_003803) -243 NM_003803 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 235-236 chr3 120587859 120588049 + 2 NA Intergenic Intergenic -8382 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 237-291 chr5 30470270 30470474 + 2 NA Intergenic Intergenic 589812 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 181-116 chr5 16412775 16412924 + 2 NA intron (NR_104625, intron 7 of 8) intron (NR_104625, intron 7 of 8) 28253 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 504-94 chr16 80334387 80334838 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -206122 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 313-556 chr9 28322542 28322757 + 2 NA intron (NM_001354574, intron 4 of 5) MIRb|SINE|MIR 396656 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 414-67 chr12 41451217 41451550 + 2 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 13644 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 626-63 chr2 48574995 48575462 + 2 NA intron (NM_172311, intron 1 of 10) L1MB1|LINE|L1 -5359 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 310-44 chr10 66230406 66230665 + 2 NA intron (NM_001127384, intron 13 of 17) L1MA5|LINE|L1 659110 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 322-62 chr10 63098287 63098466 + 2 NA Intergenic AluSx4|SINE|Alu -34871 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 206-228 chr5 170896118 170896255 + 2 NA intron (NM_022897, intron 5 of 27) intron (NM_022897, intron 5 of 27) 34168 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 359-371 chr4 99398183 99398458 + 2 NA Intergenic L1MA3|LINE|L1 36814 NM_001166504 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 223-38 chr10 72743641 72743773 + 2 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 22678 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 356-101 chr12 22674406 22674621 + 2 NA intron (NM_018638, intron 6 of 7) intron (NM_018638, intron 6 of 7) 49342 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 327-80 chr11 29563686 29563989 + 2 NA Intergenic HAL1M8|LINE|L1 -30576 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 143-48 chr2 166642364 166642482 + 2 NA Intergenic Intergenic -155452 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 243-433 chr7 131977627 131977801 + 2 NA Intergenic L2b|LINE|L2 67494 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 378-105 chr12 65006612 65006836 + 2 NA Intergenic HAL1|LINE|L1 -14433 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 251-382 chr7 126808497 126808669 + 2 NA intron (NM_001371085, intron 6 of 10) MER89-int|LTR|ERV1 249601 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 420-250 chr6 71677786 71678062 + 2 NA Intergenic L2c|LINE|L2 -208779 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 308-313 chr3 191818611 191818834 + 2 NA Intergenic Intergenic 357559 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 221-142 chr2 98564191 98564388 + 2 NA intron (NM_001351428, intron 18 of 24) intron (NM_001351428, intron 18 of 24) 44223 NM_001008215 493753 Hs.596537 NM_001008215 ENSG00000183513 COA5 6330578E17Rik|C2orf64|CEMCOX3|Pet191 cytochrome c oxidase assembly factor 5 protein-coding 389-295 chr5 118048743 118049077 + 2 NA intron (NR_104997, intron 2 of 2) MIR|SINE|MIR -233664 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 211-316 chr8 137326121 137326297 + 2 NA Intergenic Intergenic 87379 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 525-162 chr3 89302330 89302808 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 194948 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 378-262 chr20 55898380 55898584 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 107037 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 543-219 chr6 65151992 65152321 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -149262 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 424-21 chr10 18786183 18786563 + 2 NA Intergenic Intergenic 126942 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 224-360 chrX 98074519 98074702 + 2 NA Intergenic Intergenic -510075 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 414-242 chr4 93293378 93293739 + 2 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -535195 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 225-322 chr7 26667667 26667849 + 2 NA 3' UTR (NM_001303468, exon 13 of 13) 3' UTR (NM_001303468, exon 13 of 13) 29887 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 198-225 chr7 31645107 31645271 + 2 NA intron (NM_194300, intron 10 of 12) intron (NM_194300, intron 10 of 12) -41828 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 347-289 chr22 43799426 43799724 + 2 NA intron (NM_022785, intron 2 of 31) L1MD3|LINE|L1 12730 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 507-268 chr8 135889447 135889840 + 2 NA Intergenic Intergenic 432187 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 306-441 chr6 88467277 88467477 + 2 NA Intergenic MER21C|LTR|ERVL 71992 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 285-383 chr7 32103819 32104100 + 2 NA intron (NM_001322059, intron 3 of 17) HAL1|LINE|L1 -32523 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 304-350 chr3 113988970 113989138 + 2 NA intron (NR_148531, intron 11 of 14) AluY|SINE|Alu 41041 NM_173570 254887 Hs.21902 NM_173570 ENSG00000184307 ZDHHC23 DHHC-23|NIDD zinc finger DHHC-type containing 23 protein-coding 517-104 chr17 72489721 72490230 + 2 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 102829 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 186-95 chr2 225726944 225727123 + 2 NA Intergenic Intergenic 326147 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 350-129 chr14 36700683 36700995 + 2 NA intron (NM_001171170, intron 7 of 10) intron (NM_001171170, intron 7 of 10) 43271 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 191-195 chr7 9092004 9092141 + 2 NA Intergenic L1PREC2|LINE|L1 -542198 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 182-147 chr6 40101079 40101213 + 2 NA Intergenic LTR8|LTR|ERV1 -166684 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 365-218 chr2 194317727 194318034 + 2 NA Intergenic Intergenic -26389 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 386-218 chr21 39981870 39982118 + 2 NA Intergenic Intergenic 114556 NM_006198 5121 Hs.80296 NM_006198 ENSG00000183036 PCP4 PEP-19 Purkinje cell protein 4 protein-coding 560-131 chr4 149718665 149719086 + 2 NA intron (NM_001363507, intron 5 of 13) MLT1D|LTR|ERVL-MaLR 96968 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 244-237 chr3 146622540 146622733 + 2 NA Intergenic Intergenic -16420 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 311-239 chr2 21702234 21702398 + 2 NA intron (NR_038837, intron 2 of 2) intron (NR_038837, intron 2 of 2) 8336 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 345-152 chr14 57934974 57935246 + 2 NA Intergenic Intergenic -69018 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 400-4 chr1 48275524 48275764 + 2 NA Intergenic L1PA7|LINE|L1 52928 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 126-58 chr6 26618094 26618182 + 2 NA Intergenic L1MD|LINE|L1 21185 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 268-106 chr13 107587225 107587398 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -56063 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 194-150 chr4 102515743 102515855 + 2 NA intron (NM_001319226, intron 1 of 23) L1MEf|LINE|L1 -13313 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 449-275 chr8 97339079 97339475 + 2 NA intron (NR_125390, intron 2 of 2) L1MEg|LINE|L1 -18988 NR_145760 109617016 NR_145760 ENSG00000207215 SNORD3H - small nucleolar RNA, C/D box 3H snoRNA 452-201 chr4 149109917 149110271 + 2 NA Intergenic MIR3|SINE|MIR -44201 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 227-31 chr10 30573756 30573954 + 2 NA Intergenic Intergenic 55898 NM_183058 119180 Hs.522610 NM_183058 ENSG00000151033 LYZL2 LYZD2 lysozyme like 2 protein-coding 331-428 chr5 108328782 108329001 + 2 NA intron (NM_001163315, intron 4 of 8) MIRc|SINE|MIR 53207 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 645-10 chr10 87561327 87561958 + 2 NA Intergenic Intergenic 53809 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 339-109 chr11 99516448 99516682 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -39580 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 146-15 chr10 76800619 76800711 + 2 NA Intergenic LTR78|LTR|ERV1 -87379 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 542-34 chr11 31132288 31132728 + 2 NA intron (NM_001367979, intron 10 of 38) intron (NM_001367979, intron 10 of 38) -139822 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 585-32 chr12 130248220 130248542 + 2 NA Intergenic Intergenic 85922 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 308-474 chr7 93486037 93486291 + 2 NA intron (NM_001164738, intron 2 of 12) intron (NM_001164738, intron 2 of 12) -2145 NR_030164 574442 NR_030164 ENSG00000207656 MIR489 MIRN489|hsa-mir-489|mir-489 microRNA 489 ncRNA 295-121 chr13 113485262 113485521 + 2 NA intron (NM_001014283, intron 1 of 6) L4_B_Mam|LINE|RTE-X 5320 NM_001014283 55208 Hs.682987 NM_018185 ENSG00000150401 DCUN1D2 C13orf17 defective in cullin neddylation 1 domain containing 2 protein-coding 369-19 chr1 182228324 182228641 + 2 NA intron (NR_104175, intron 2 of 2) L3|LINE|CR1 85579 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 362-403 chr7 48711895 48712195 + 2 NA Intergenic L1MDb|LINE|L1 -212502 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 449-95 chr16 72207846 72208150 + 2 NA Intergenic MLT2B4|LTR|ERVL -35548 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 475-238 chr6 27630949 27631387 + 2 NA Intergenic CpG -62867 NR_038293 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 406-120 chr18 42812957 42813222 + 2 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 302596 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 183-47 chr14 58850384 58850529 + 2 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 22168 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 129-49 chr20 42824191 42824297 + 2 NA intron (NM_133170, intron 2 of 31) L1ME4a|LINE|L1 138761 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 376-205 chr2 210499116 210499323 + 2 NA intron (NM_001122633, intron 1 of 38) L1PA15-16|LINE|L1 -20499 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 454-288 chr7 31212883 31213311 + 2 NA Intergenic L2b|LINE|L2 127629 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 333 chr1 3342180 3342420 + 2 NA intron (NM_022114, intron 3 of 16) intron (NM_022114, intron 3 of 16) -112365 NM_014448 27237 Hs.87435 NM_014448 ENSG00000130762 ARHGEF16 GEF16|NBR Rho guanine nucleotide exchange factor 16 protein-coding 229-182 chr2 58506262 58506415 + 2 NA Intergenic Intergenic -14415 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 470-203 chr4 155466738 155467103 + 2 NA Intergenic Intergenic -89955 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 195-169 chr4 94400634 94400824 + 2 NA Intergenic Intergenic -51128 NR_046186 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 361-338 chr4 160109727 160110044 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -332101 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 481-256 chr5 145408127 145408448 + 2 NA Intergenic L1PBa|LINE|L1 427055 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 352-517 chr8 25027301 25027522 + 2 NA Intergenic L2c|LINE|L2 -70542 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 370-238 chr2 100503736 100504084 + 2 NA Intergenic L1PB1|LINE|L1 33428 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 355-43 chr10 36817154 36817405 + 2 NA Intergenic Intergenic -308578 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 254-410 chr8 87656825 87657042 + 2 NA Intergenic Intergenic 217082 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 537-206 chr5 180359796 180360173 + 2 NA Intergenic LTR12F|LTR|ERV1 -6648 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 307-474 chr8 43132120 43132417 + 2 NA Intergenic L1ME2|LINE|L1 -8196 NM_001363227 138050 Hs.600384 NM_152419 ENSG00000165102 HGSNAT HGNAT|MPS3C|RP73|TMEM76 heparan-alpha-glucosaminide N-acetyltransferase protein-coding 321-238 chr17 72306626 72306901 + 2 NA Intergenic Intergenic -36048 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 262-314 chr4 65973088 65973289 + 2 NA Intergenic MER54B|LTR|ERVL -302693 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 283-101 chr12 58324025 58324175 + 2 NA Intergenic Intergenic 236208 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 355-93 chr11 78630350 78630684 + 2 NA Intergenic L1M1|LINE|L1 -55653 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 519-187 chr5 172030633 172031028 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -23957 NM_033644 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 348-84 chr11 76584705 76584880 + 2 NA Intergenic L1MA8|LINE|L1 85146 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 476-167 chr21 22681050 22681467 + 2 NA Intergenic L1MEc|LINE|L1 -398026 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 326-379 chr4 103234010 103234196 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -35760 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 359-21 chr1 113697787 113698052 + 2 NA intron (NM_001323043, intron 18 of 18) intron (NM_001323043, intron 18 of 18) 61236 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 129-12 chr12 12948308 12948387 + 2 NA intron (NM_018654, intron 1 of 2) intron (NM_018654, intron 1 of 2) 2037 NM_018654 55507 Hs.644599 NM_018654 ENSG00000111291 GPRC5D - G protein-coupled receptor class C group 5 member D protein-coding 147-27 chr15 49787845 49787986 + 2 NA Intergenic L1ME1|LINE|L1 166867 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 374-105 chr14_GL000225v1_random 29830 30138 + 2 NA NA LSAU|Satellite|Satellite NA NA 291-295 chr3 126581255 126581464 + 2 NA Intergenic L1MEg|LINE|L1 -22427 NR_130715 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 475-38 chr11 39485953 39486254 + 2 NA Intergenic MER67C|LTR|ERV1 807027 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 409-254 chr5 122339999 122340327 + 2 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) 27926 NM_001308107 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 410-185 chr3 25794036 25794341 + 2 NA exon (NM_017897, exon 3 of 3) exon (NM_017897, exon 3 of 3) 4098 NM_017897 54995 Hs.55781 NM_017897 ENSG00000151093 OXSM CEM1|FASN2D|KASI|KS 3-oxoacyl-ACP synthase, mitochondrial protein-coding 181-54 chr17 62601300 62601447 + 2 NA intron (NM_001284363, intron 16 of 19) intron (NM_001284363, intron 16 of 19) -26297 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 365-229 chr20 10136495 10136851 + 2 NA intron (NR_040710, intron 2 of 4) MER47A|DNA|TcMar-Tigger -82125 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 400-348 chr8 107979605 107979967 + 2 NA intron (NM_001282863, intron 2 of 4) L2|LINE|L2 102153 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 322-122 chr12 50613782 50613962 + 2 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 108887 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 404-275 chr6 102138335 102138668 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 739516 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 528-5 chr1 41951378 41951768 + 2 NA intron (NR_038261, intron 1 of 3) THE1D|LTR|ERVL-MaLR -32651 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 467-208 chr4 101481280 101481734 + 2 NA Intergenic Intergenic 133730 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 311-229 chr19 37618630 37618841 + 2 NA Intergenic Intergenic 23859 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 501-114 chr2 124248208 124248629 + 2 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 223131 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 114-35 chr22 48009058 48009145 + 2 NA Intergenic L1MC3|LINE|L1 -265263 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 343-334 chr3 44575481 44575702 + 2 NA intron (NM_001288592, intron 5 of 5) AluSp|SINE|Alu -9373 NM_173658 285349 Hs.733134 NM_173658 ENSG00000144792 ZNF660 - zinc finger protein 660 protein-coding 358-282 chr22 47131309 47131578 + 2 NA intron (NM_001284305, intron 12 of 12) intron (NM_001284305, intron 12 of 12) -214128 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 467-164 chr22 34216230 34216545 + 2 NA Intergenic Intergenic -293499 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 232-352 chr7 45529044 45529226 + 2 NA Intergenic L1MD1|LINE|L1 -45005 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 182-13 chr1 199059192 199059367 + 2 NA intron (NR_126351, intron 2 of 2) intron (NR_126351, intron 2 of 2) -40315 NR_110525 102800316 Hs.568480 NR_110525 LINC01222 TCONS_00000112 long intergenic non-protein coding RNA 1222 ncRNA 314-295 chr2 115627141 115627451 + 2 NA intron (NM_001321912, intron 6 of 25) LTR53|LTR|ERVL 283481 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 545-105 chr2 29018760 29019163 + 2 NA intron (NM_199280, intron 10 of 19) MER113|DNA|hAT-Charlie 37663 NM_199280 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 401-180 chr2 218209213 218209435 + 2 NA Intergenic L1M4|LINE|L1 -7865 NM_152862 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 390-144 chr17 68151542 68151789 + 2 NA Intergenic Intergenic -46995 NR_027283 440461 Hs.661522 NR_027283 ARHGAP27P2 - Rho GTPase activating protein 27 pseudogene 2 pseudo 404-288 chr7 21378195 21378411 + 2 NA Intergenic Intergenic -49780 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 268-301 chr5 7120236 7120408 + 2 NA Intergenic Intergenic 149032 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 196-109 chr19 43934544 43934688 + 2 NA 5' UTR (NM_003425, exon 2 of 10) 5' UTR (NM_003425, exon 2 of 10) 666 NM_003425 7596 Hs.381285 NM_003425 ENSG00000124459 ZNF45 KOX5|ZNF13 zinc finger protein 45 protein-coding 385-234 chr3 15357298 15357667 + 2 NA Intergenic L1MC1|LINE|L1 -16102 NM_001018009 9467 Hs.257761 NM_004844 ENSG00000131370 SH3BP5 SAB|SH3BP-5 SH3 domain binding protein 5 protein-coding 233-313 chr5 121621061 121621243 + 2 NA Intergenic Intergenic -230730 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 207-44 chr10 107630824 107630980 + 2 NA Intergenic L1MC4|LINE|L1 438391 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 378-236 chr2 112815955 112816260 + 2 NA Intergenic Intergenic 20672 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 525-236 chr7 44182459 44182951 + 2 NA intron (NM_001354800, intron 1 of 10) HERVL-int|LTR|ERVL 6734 NM_000162 2645 Hs.1270 NM_000162 ENSG00000106633 GCK FGQTL3|GK|GLK|HHF3|HK4|HKIV|HXKP|LGLK|MODY2 glucokinase protein-coding 251 chr1 30831906 30832102 + 2 NA intron (NR_146732, intron 2 of 2) L1ME3B|LINE|L1 7352 NR_146732 105378622 Hs.209284 NR_146732 ENSG00000223382 LINC01778 - long intergenic non-protein coding RNA 1778 ncRNA 342-556 chr9 93416420 93416656 + 2 NA Intergenic L1PA10|LINE|L1 35070 NR_136235 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 464-16 chr10 22144496 22144809 + 2 NA Intergenic HERV9-int|LTR|ERV1 65331 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 241-298 chr5 45457310 45457509 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 238971 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 320-64 chr10 83077920 83078173 + 2 NA Intergenic MLT1E3-int|LTR|ERVL-MaLR 599043 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 271-233 chr20 54215004 54215184 + 2 NA intron (NM_002623, intron 2 of 3) intron (NM_002623, intron 2 of 3) 7007 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 325-82 chr10 105910825 105911134 + 2 NA Intergenic L2a|LINE|L2 -90646 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 291-391 chr6 126447359 126447548 + 2 NA intron (NR_104462, intron 3 of 3) intron (NR_104462, intron 3 of 3) -37178 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 545-252 chr9 10118206 10118689 + 2 NA intron (NM_002839, intron 3 of 45) MIR|SINE|MIR 319055 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 319-330 chr3 66954797 66955019 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -43399 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 356-93 chr11 110284054 110284315 + 2 NA intron (NM_001260493, intron 1 of 15) intron (NM_001260493, intron 1 of 15) 12528 NM_001260494 5962 Hs.263671 NM_002906 ENSG00000137710 RDX DFNB24 radixin protein-coding 554-211 chr9 7202342 7202720 + 2 NA Intergenic MamRep1151|LTR?|LTR? 445181 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 352-68 chr10 132842056 132842326 + 2 NA intron (NM_001200049, intron 44 of 57) MSTC-int|LTR|ERVL-MaLR -56044 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B|SPAX8 NK6 homeobox 2 protein-coding 628-39 chr14 41393853 41394360 + 2 NA Intergenic Intergenic -212750 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 273-435 chr7 143195364 143195609 + 2 NA intron (NM_001130026, intron 8 of 10) L1M3|LINE|L1 12067 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 273-200 chr2 5619012 5619214 + 2 NA Intergenic Intergenic 72005 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 628-3 chr1 41337212 41337800 + 2 NA Intergenic L1MEc|LINE|L1 -23928 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 222-375 chr8 119157056 119157233 + 2 NA Intergenic Intergenic -51219 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 575-104 chr20 46577952 46578337 + 2 NA intron (NM_001193340, intron 9 of 12) AluSc8|SINE|Alu -27490 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 246-181 chr2 7320370 7320562 + 2 NA Intergenic Intergenic -100795 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 510-158 chr2 217172485 217172892 + 2 NA Intergenic Intergenic -110045 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 284-129 chr14 102182670 102182849 + 2 NA intron (NM_001353659, intron 1 of 1) L1ME4a|LINE|L1 42862 NM_001353677 91833 Hs.36859 NM_144574 ENSG00000140153 WDR20 DMR WD repeat domain 20 protein-coding 383-381 chr8 79075975 79076238 + 2 NA Intergenic Intergenic 238577 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 309-260 chr2 118934484 118934775 + 2 NA Intergenic L2|LINE|L2 -7540 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 700-33 chr15 76625894 76626284 + 2 NA intron (NR_148227, intron 21 of 32) MER30|DNA|hAT-Charlie 39442 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 349-380 chr4 96091485 96091818 + 2 NA Intergenic Intergenic -219052 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 371-378 chr8 64005159 64005422 + 2 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 235860 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 318-401 chr4 60211476 60211725 + 2 NA Intergenic L1M1|LINE|L1 -711019 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 581-77 chr2 63769197 63769616 + 2 NA Intergenic Intergenic -71558 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 312-499 chr7 133165060 133165253 + 2 NA Intergenic Intergenic -56645 NR_133931 105375512 Hs.521205 NR_133931 LOC105375512 - uncharacterized LOC105375512 ncRNA 474-223 chr4 181709086 181709431 + 2 NA Intergenic Intergenic 120715 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 422-119 chr18 1170637 1170958 + 2 NA Intergenic Intergenic 188832 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 259-64 chr11 2086305 2086491 + 2 NA Intergenic Intergenic 47811 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 339-514 chr6 165958324 165958522 + 2 NA intron (NR_026860, intron 1 of 1) AluSq2|SINE|Alu -29128 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 598-8 chr1 170334792 170335341 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -50858 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 191-184 chr6 40214160 40214327 + 2 NA Intergenic L1M4|LINE|L1 141763 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 381-311 chr5 63860774 63861007 + 2 NA Intergenic L1M4|LINE|L1 101402 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 499-180 chr4 36755084 36755422 + 2 NA Intergenic Intergenic -113353 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 295-57 chr10 113342602 113342844 + 2 NA Intergenic MIR3|SINE|MIR -208108 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 291-262 chr20 43030890 43031103 + 2 NA intron (NM_133170, intron 1 of 31) LTR16|LTR|ERVL 62253 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 293-251 chr3 5439583 5439845 + 2 NA Intergenic L3|LINE|CR1 -189459 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 184-159 chr7 92928844 92929007 + 2 NA Intergenic Intergenic -92298 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 371-187 chr2 132738902 132739219 + 2 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -67534 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 445-41 chr11 113781012 113781426 + 2 NA TTS (NM_001101389) TTS (NM_001101389) 1423 NM_001101389 644672 Hs.705360 NM_001101389 ENSG00000228607 CLDN25 - claudin 25 protein-coding 355-226 chr2 12514722 12514988 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -202017 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 400-31 chr10 32589632 32589942 + 2 NA intron (NM_001321115, intron 19 of 43) L1PA7|LINE|L1 143647 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 526-154 chr20 54747477 54747863 + 2 NA Intergenic L1ME3|LINE|L1 272077 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 296-138 chr14 47686307 47686537 + 2 NA Intergenic L1MA4A|LINE|L1 -11468 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 214-79 chr12 32089693 32089883 + 2 NA Intergenic Intergenic -17019 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 370-240 chr2 107390900 107391206 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -41528 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 114-37 chr3 35377401 35377484 + 2 NA intron (NR_110817, intron 1 of 3) intron (NR_110817, intron 1 of 3) 16581 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 412-273 chr6 34266041 34266449 + 2 NA Intergenic L1ME1|LINE|L1 -17137 NR_155741 221491 Hs.381300 NM_178508 ENSG00000186577 SMIM29 C6orf1|LBH small integral membrane protein 29 protein-coding 227-33 chr10 38576097 38576281 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -120407 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 464-48 chr13 54300872 54301207 + 2 NA Intergenic L1M1|LINE|L1 11009 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 304-264 chr2 116802712 116802898 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -1011886 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 484-194 chr4 113318019 113318388 + 2 NA intron (NM_001354275, intron 26 of 43) intron (NM_001354275, intron 26 of 43) 25364 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 625-47 chr2 60628559 60629068 + 2 NA Intergenic Intergenic -75159 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 566-121 chr3 5602230 5602597 + 2 NA Intergenic L1PA15|LINE|L1 -352158 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 302-234 chr2 167555578 167555747 + 2 NA Intergenic Intergenic -263010 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 242-101 chr14 42678241 42678477 + 2 NA Intergenic Intergenic 1071503 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 720-11 chr10 73315267 73315821 + 2 NA intron (NM_001367801, intron 10 of 27) L1ME1|LINE|L1 43210 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 260-314 chr4 80626549 80626800 + 2 NA intron (NM_001206997, intron 4 of 6) L1MA8|LINE|L1 290954 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 196-43 chr10 126143757 126143927 + 2 NA intron (NM_001288974, intron 4 of 18) intron (NM_001288974, intron 4 of 18) -170569 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 241-63 chr11 39240149 39240355 + 2 NA Intergenic L1M4|LINE|L1 591394 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 313-501 chr7 62809529 62809734 + 2 NA Intergenic ALR/Alpha|Satellite|centr 494425 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 255-285 chr4 18233120 18233349 + 2 NA Intergenic L1M4|LINE|L1 -211359 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 243-293 chr3 100731923 100732114 + 2 NA intron (NM_001007565, intron 4 of 7) intron (NM_001007565, intron 4 of 7) 22476 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 464-266 chr9 14026604 14027030 + 2 NA Intergenic MIRb|SINE|MIR 98846 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 266-60 chr11 25975912 25976109 + 2 NA Intergenic Intergenic -213113 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 304-35 chr10 9748556 9748836 + 2 NA Intergenic Intergenic -310026 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 370-142 chr14 56956307 56956645 + 2 NA Intergenic Intergenic 143318 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 644-20 chr14 59671775 59672311 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -25023 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 461-12 chr1 151389544 151389959 + 2 NA Intergenic Intergenic -9822 NM_002796 5692 Hs.89545 NM_002796 ENSG00000159377 PSMB4 HN3|HsN3|PRAAS3|PROS-26|PROS26 proteasome subunit beta 4 protein-coding 428-317 chr9 87182956 87183228 + 2 NA Intergenic L1ME3A|LINE|L1 34448 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 431-88 chr15 26140795 26141136 + 2 NA Intergenic Intergenic 25152 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 351-87 chr12 16735030 16735289 + 2 NA Intergenic Intergenic -126945 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 232-155 chr2 3274844 3275068 + 2 NA intron (NM_001330530, intron 3 of 9) L1MEd|LINE|L1 102862 NM_001330530 7260 Hs.502770 NM_003310 ENSG00000032389 EIPR1 EIPR-1|TSSC1 EARP complex and GARP complex interacting protein 1 protein-coding 360-43 chr10 70032321 70032563 + 2 NA Intergenic AluJr|SINE|Alu -20404 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 451-125 chr20 2576304 2576602 + 2 NA intron (NM_080751, intron 5 of 19) MamRep605|LTR?|LTR? 39846 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 391-372 chr8 138234400 138234712 + 2 NA intron (NM_015912, intron 7 of 19) L1MB1|LINE|L1 -151011 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 188-152 chr4 44636165 44636349 + 2 NA intron (NM_182592, intron 2 of 5) intron (NM_182592, intron 2 of 5) 15384 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 138-80 chr7 39297573 39297676 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 31510 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 361-357 chr5 44147410 44147688 + 2 NA Intergenic Intergenic -241183 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 292-240 chr2 188152395 188152680 + 2 NA intron (NR_126396, intron 2 of 2) intron (NR_126396, intron 2 of 2) 135154 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 379-6 chr1 49433981 49434236 + 2 NA intron (NR_046839, intron 2 of 3) intron (NR_046839, intron 2 of 3) 37977 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 241-418 chr9 8621848 8622047 + 2 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 111999 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 275-58 chr11 15371276 15371462 + 2 NA Intergenic Intergenic 222267 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 502-224 chr5 87205317 87205773 + 2 NA intron (NR_105018, intron 2 of 3) AluSx1|SINE|Alu 33656 NR_130914 55338 Hs.677194 NM_018382 LINC01949 - long intergenic non-protein coding RNA 1949 ncRNA 298-437 chr7 73991083 73991299 + 2 NA Intergenic L2c|LINE|L2 -36598 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 324-377 chr4 14203077 14203334 + 2 NA Intergenic MIRb|SINE|MIR 91237 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 195-115 chr2 133837080 133837218 + 2 NA Intergenic Intergenic -268686 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 299-228 chr2 145776187 145776376 + 2 NA Intergenic Intergenic -810776 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 527-41 chr10 131776457 131776916 + 2 NA intron (NR_038365, intron 2 of 4) intron (NR_038365, intron 2 of 4) 13513 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 245-353 chr8 110768280 110768442 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 259072 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 373-104 chr13 84562607 84562862 + 2 NA intron (NR_046871, intron 5 of 6) intron (NR_046871, intron 5 of 6) -220920 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 242-192 chr2 103296248 103296419 + 2 NA Intergenic Intergenic -311904 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 352-349 chr4 28899186 28899438 + 2 NA Intergenic AluSx1|SINE|Alu 79730 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 293-80 chr12 25617046 25617274 + 2 NA intron (NM_001352232, intron 1 of 10) intron (NM_001352232, intron 1 of 10) 31418 NM_001145727 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 158-115 chr8 83349197 83349346 + 2 NA Intergenic Intergenic -54487 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 285-393 chr7 104754905 104755110 + 2 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) 49085 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 117-50 chrX 144625103 144625167 + 2 NA Intergenic Intergenic -622368 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 393-98 chr14 59240192 59240518 + 2 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -23086 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 978-21 chr9 126131142 126132008 + 2 NA Intergenic MIRb|SINE|MIR 144340 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 338-135 chr12 98316910 98317090 + 2 NA Intergenic L1ME3Cz|LINE|L1 140145 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 423-254 chr6 156331849 156332196 + 2 NA Intergenic L1MA4|LINE|L1 -46728 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 541-187 chr5 107699403 107699786 + 2 NA Intergenic Intergenic -28657 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 337-360 chr3 105122712 105122902 + 2 NA Intergenic Intergenic -243906 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 298-461 chr8 79733823 79733984 + 2 NA Intergenic Intergenic 32572 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 226-253 chr4 54250295 54250480 + 2 NA intron (NM_001347828, intron 2 of 23) HERV35I-int|LTR|ERV1 16427 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 287-223 chr20 21880441 21880703 + 2 NA Intergenic L1PA15|LINE|L1 -173518 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 357-43 chr10 88643210 88643511 + 2 NA Intergenic Intergenic -21082 NM_001198830 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 384-64 chr11 110776328 110776555 + 2 NA Intergenic LTR16C|LTR|ERVL -63252 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 510-256 chr7 25619308 25619622 + 2 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 43675 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 357-448 chr8 104940394 104940719 + 2 NA Intergenic L1MCb|LINE|L1 -351532 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 667-47 chr2 29379705 29380087 + 2 NA intron (NM_004304, intron 5 of 28) MSTA|LTR|ERVL-MaLR 95481 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 370-335 chr4 37018051 37018265 + 2 NA intron (NR_134669, intron 1 of 1) intron (NR_134669, intron 1 of 1) 16379 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 345-553 chr9 37737993 37738324 + 2 NA intron (NM_001371225, intron 14 of 15) MER63B|DNA|hAT-Blackjack -15645 NM_001286952 158234 Hs.655614 NM_144964 ENSG00000165275 TRMT10B RG9MTD3|bA3J10.9 tRNA methyltransferase 10B protein-coding 418-275 chr8 31795760 31796131 + 2 NA intron (NM_013962, intron 1 of 4) L2a|LINE|L2 156193 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 405-239 chr5 2998161 2998544 + 2 NA Intergenic Intergenic 80498 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 223-177 chr2 221070128 221070280 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 502100 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 208-69 chr13 61912737 61912871 + 2 NA Intergenic Intergenic 116744 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 354-446 chr7 131338079 131338268 + 2 NA intron (NM_001321316, intron 1 of 17) L1MEg|LINE|L1 10297 NM_001321316 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 620-117 chr6 40376282 40376722 + 2 NA Intergenic L1MB5|LINE|L1 -1835 NR_160958 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 496-149 chr2 168608409 168608748 + 2 NA intron (NM_001256126, intron 3 of 10) L1MB8|LINE|L1 25635 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 543-124 chr2 66825178 66825565 + 2 NA Intergenic Intergenic -79065 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 195-113 chr2 131141776 131141927 + 2 NA intron (NM_017958, intron 7 of 7) MER6A|DNA|TcMar-Tigger 37004 NM_001267063 55041 Hs.469944 NM_017958 ENSG00000115762 PLEKHB2 EVT2 pleckstrin homology domain containing B2 protein-coding 374-166 chr19 51921047 51921253 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -6322 NM_024840 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 407-119 chr18 8891260 8891550 + 2 NA Intergenic MER77B|LTR|ERVL 174024 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 240-413 chr8 83426882 83427069 + 2 NA Intergenic Intergenic 23217 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 603-138 chr6 4544206 4544745 + 2 NA Intergenic L1MD3|LINE|L1 55677 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 323-313 chr22 38598322 38598535 + 2 NA intron (NM_001013647, intron 14 of 16) MIRb|SINE|MIR 27928 NR_134627 105373031 Hs.144041 NR_134627 LOC105373031 - uncharacterized LOC105373031 ncRNA 190-95 chr2 146338368 146338486 + 2 NA Intergenic Intergenic -248630 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 299-179 chr18 33944793 33945034 + 2 NA intron (NM_001198546, intron 7 of 9) intron (NM_001198546, intron 7 of 9) 103699 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 306-442 chr6 98432457 98432639 + 2 NA Intergenic Intergenic 399152 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 146-58 chr3 105990609 105990720 + 2 NA Intergenic L1MA2|LINE|L1 -121263 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 256-97 chr12 130602216 130602464 + 2 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 26116 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 278-28 chr10 10185755 10185935 + 2 NA Intergenic HAL1|LINE|L1 127123 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 471-204 chr5 15319205 15319563 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -52824 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 226-320 chr7 24281353 24281506 + 2 NA Intergenic L1MEc|LINE|L1 -2761 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 373-276 chr4 10604952 10605197 + 2 NA intron (NM_052964, intron 2 of 18) MLT2C2|LTR|ERVL 79694 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 586-115 chr4 124811089 124811499 + 2 NA Intergenic Intergenic -98562 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 329-460 chr5 77681621 77681871 + 2 NA Intergenic L1MC5a|LINE|L1 -43049 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 278-175 chr18 23684805 23685006 + 2 NA Intergenic Intergenic -4548 NR_130106 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 296-99 chr12 23164455 23164714 + 2 NA Intergenic L1MB7|LINE|L1 -11052 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 163-10 chr1 197311947 197312062 + 2 NA intron (NM_001257965, intron 3 of 14) intron (NM_001257965, intron 3 of 14) 43752 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 668-28 chr14 59002966 59003402 + 2 NA intron (NR_110547, intron 4 of 5) L1MB3|LINE|L1 174896 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 299-374 chr5 85449281 85449469 + 2 NA Intergenic Intergenic -833069 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 261-394 chr8 132971909 132972117 + 2 NA intron (NM_003235, intron 33 of 47) MIRc|SINE|MIR 74568 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 281-296 chr3 141617112 141617282 + 2 NA Intergenic Intergenic -46002 NR_136190 646730 Hs.570677 NR_136190 LINC02618 - long intergenic non-protein coding RNA 2618 ncRNA 262-173 chr18 1190189 1190404 + 2 NA Intergenic MIR|SINE|MIR 169333 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 467-147 chr20 4444244 4444662 + 2 NA Intergenic Intergenic -195166 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 721-74 chr6 71519601 71520130 + 2 NA Intergenic Intergenic 98838 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 491-262 chr8 103286243 103286547 + 2 NA intron (NR_148215, intron 1 of 3) intron (NR_148215, intron 1 of 3) -12099 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 751-75 chr7 97709685 97710297 + 2 NA Intergenic L1PA6|LINE|L1 -22095 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 236-80 chr12 14717967 14718113 + 2 NA Intergenic L1MEd|LINE|L1 -21441 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 317-304 chr3 78474400 78474680 + 2 NA Intergenic L1PA14|LINE|L1 -425577 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 508-268 chrX 95978060 95978477 + 2 NA Intergenic L1M1|LINE|L1 359634 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 241-301 chr5 54272621 54272784 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 37871 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 332-205 chr17 71396306 71396535 + 2 NA Intergenic Intergenic -194241 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 383-266 chr3 189518459 189518726 + 2 NA Intergenic L1M2a1|LINE|L1 -78154 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 318-34 chr1 184306058 184306283 + 2 NA Intergenic L1MA1|LINE|L1 -80859 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 516-95 chr16 59006655 59007097 + 2 NA Intergenic L2c|LINE|L2 -272560 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 328-2 chr1 12726386 12726580 + 2 NA non-coding (NR_111984, exon 3 of 3) non-coding (NR_111984, exon 3 of 3) 10368 NR_111984 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 321-508 chr6 152017292 152017516 + 2 NA intron (NM_001122741, intron 6 of 8) L3|LINE|CR1 150883 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 389-395 chrX 82560439 82560706 + 2 NA Intergenic LTR8|LTR|ERV1 -947718 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 425-147 chr2 141811486 141811857 + 2 NA intron (NM_018557, intron 1 of 90) (ATTTT)n|Simple_repeat|Simple_repeat 320030 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 382-104 chr14 32783397 32783681 + 2 NA intron (NM_004274, intron 12 of 13) intron (NM_004274, intron 12 of 13) -155340 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 133-15 chr12 998209 998278 + 2 NA intron (NR_027948, intron 1 of 19) L2|LINE|L2 7020 NR_027948 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 267-58 chr10 112805607 112805846 + 2 NA intron (NM_001365713, intron 8 of 8) MLT1C|LTR|ERVL-MaLR -17770 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 435-125 chr2 114437849 114438129 + 2 NA Intergenic Intergenic -4652 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 476-59 chr12 2617482 2617737 + 2 NA intron (NM_001129840, intron 29 of 46) intron (NM_001129840, intron 29 of 46) 54611 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 415-173 chr3 35958528 35958735 + 2 NA Intergenic HAL1|LINE|L1 214155 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 388-182 chr20 23263243 23263619 + 2 NA Intergenic L1PA2|LINE|L1 -87360 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 413-197 chr3 131578847 131579099 + 2 NA intron (NM_130808, intron 9 of 15) Tigger1|DNA|TcMar-Tigger -76002 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 224-131 chr19 44603496 44603654 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -9988 NM_001205280 147710 Hs.512509 NM_001205280 ENSG00000216588 IGSF23 - immunoglobulin superfamily member 23 protein-coding 681-55 chr4 14667378 14667933 + 2 NA intron (NR_126435, intron 3 of 6) Tigger3a|DNA|TcMar-Tigger 220514 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 282-477 chr9 8306308 8306531 + 2 NA Intergenic L1MB3|LINE|L1 427527 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 227-112 chr14 72468013 72468191 + 2 NA intron (NM_001370288, intron 7 of 16) intron (NM_001370288, intron 7 of 16) -48718 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 368-409 chr6 149243285 149243615 + 2 NA non-coding (NR_149096, exon 3 of 3) non-coding (NR_149096, exon 3 of 3) 14101 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 182-65 chr16 55512368 55512481 + 2 NA intron (NM_017839, intron 1 of 13) L1MEf|LINE|L1 3352 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 612-87 chr3 40762862 40763276 + 2 NA Intergenic L1MA2|LINE|L1 238109 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 326-117 chr12 5312335 5312537 + 2 NA Intergenic Intergenic -69285 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 403-6 chr1 64804787 64805163 + 2 NA intron (NM_001366165, intron 7 of 11) intron (NM_001366165, intron 7 of 11) 59900 NM_018211 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 296-418 chr6 146508361 146508604 + 2 NA Intergenic Intergenic -35351 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 299-84 chr11 98521826 98522026 + 2 NA Intergenic Intergenic -499023 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 367-23 chr1 116050935 116051171 + 2 NA intron (NM_018420, intron 8 of 11) L1PB1|LINE|L1 -60702 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 215-219 chr4 47634599 47634772 + 2 NA intron (NM_006587, intron 16 of 21) intron (NM_006587, intron 16 of 21) -17984 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 363-433 chr8 52476205 52476526 + 2 NA Intergenic Intergenic -66486 NM_001352879 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 255-2 chr1 75368180 75368333 + 2 NA intron (NM_001320283, intron 1 of 21) intron (NM_001320283, intron 1 of 21) 233868 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 474-277 chr8 19968592 19968948 + 2 NA Intergenic MER66B|LTR|ERV1 29517 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 289-403 chr6 8634143 8634358 + 2 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) -17959 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 274-340 chr6 137335393 137335582 + 2 NA Intergenic Intergenic -116057 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 277-201 chr2 84079628 84079799 + 2 NA Intergenic L1M1|LINE|L1 -210969 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 421-169 chr21 17428369 17428718 + 2 NA Intergenic AluSx1|SINE|Alu -10347 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 368-346 chr4 182030875 182031088 + 2 NA Intergenic L1PA10|LINE|L1 113534 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 331-388 chr4 98703057 98703270 + 2 NA Intergenic L1MB3|LINE|L1 44261 NR_148380 105377342 Hs.122081 NR_148380 LOC105377342 - uncharacterized LOC105377342 ncRNA 771-28 chr15 76002919 76003639 + 2 NA intron (NM_138573, intron 3 of 5) L1MEg|LINE|L1 9145 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 382-108 chr14 49072557 49072819 + 2 NA Intergenic L1M1|LINE|L1 513692 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 761-73 chr8 68961162 68961841 + 2 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 142689 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 143-27 chr14 47185222 47185347 + 2 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 157962 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 222-48 chr10 104892182 104892362 + 2 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -226056 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 252-28 chr10 5095903 5096071 + 2 NA intron (NM_003739, intron 1 of 8) MER68|LTR|ERVL 1573 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 197-166 chr5 42418992 42419143 + 2 NA Intergenic L2a|LINE|L2 -4372 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 217-171 chr2 60332136 60332263 + 2 NA Intergenic L1ME4a|LINE|L1 50837 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 364-262 chr22 34004861 34005124 + 2 NA Intergenic Intergenic -82104 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 567-14 chr1 178525597 178526000 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 12689 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 278-98 chr13 104282708 104282954 + 2 NA Intergenic Intergenic 857631 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 429-192 chr3 76454715 76454996 + 2 NA Intergenic Intergenic -585244 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 369-123 chr14 81803123 81803332 + 2 NA Intergenic Intergenic -60089 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 313-14 chr1 87950205 87950365 + 2 NA Intergenic Intergenic -578630 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 346-56 chr10 118277156 118277355 + 2 NA Intergenic MIR|SINE|MIR 65069 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 476-222 chr5 78544606 78545051 + 2 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 103944 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 517-293 chr9 110588686 110589031 + 2 NA Intergenic Intergenic -9117 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 241-151 chr18 3025454 3025677 + 2 NA Intergenic FLAM_A|SINE|Alu -13618 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 227-119 chr15 80760682 80760843 + 2 NA Intergenic L1ME4c|LINE|L1 -18608 NM_018689 57214 Hs.459088 NM_018689 ENSG00000103888 CEMIP CCSP1|HYBID|KIAA1199|TMEM2L cell migration inducing hyaluronidase 1 protein-coding 631-13 chr1 194510796 194511345 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 1206325 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 221-22 chr1 191186977 191187142 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 41439 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 213-171 chr3 4540828 4540993 + 2 NA intron (NM_001168272, intron 4 of 60) L1MEd|LINE|L1 47562 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 315-527 chrX 69624509 69624761 + 2 NA intron (NM_001005609, intron 1 of 7) L1ME3A|LINE|L1 8522 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 469-87 chr14 71445598 71445973 + 2 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 6846 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 288-334 chr5 101221411 101221674 + 2 NA Intergenic Intergenic -318260 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 191-86 chr18 22839864 22840036 + 2 NA Intergenic Intergenic -53113 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 333-450 chr5 63792160 63792479 + 2 NA Intergenic Intergenic 169973 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 617-73 chr2 214490574 214490990 + 2 NA intron (NM_001080500, intron 3 of 3) intron (NM_001080500, intron 3 of 3) -19400 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 269-416 chr8 144937393 144937582 + 2 NA intron (NM_006958, intron 2 of 2) L1MB5|LINE|L1 13393 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 267-174 chr2 35544851 35545023 + 2 NA Intergenic Intergenic 73532 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 336-491 chr6 65022524 65022721 + 2 NA intron (NM_001292009, intron 13 of 43) L1MB8|LINE|L1 -278796 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 514-309 chrX 155590703 155591202 + 2 NA intron (NM_018196, intron 1 of 7) L1MA8|LINE|L1 -21613 NM_001304990 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 319-191 chr17 62568092 62568310 + 2 NA intron (NM_001284363, intron 9 of 19) AluSz|SINE|Alu -59469 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 370-462 chr8 137068868 137069143 + 2 NA Intergenic Intergenic 344583 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 459-257 chr6 48129389 48129817 + 2 NA Intergenic Intergenic -60914 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 139-85 chr7 52633250 52633381 + 2 NA Intergenic Intergenic -402318 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 243-367 chr5 117537768 117538008 + 2 NA intron (NR_046089, intron 3 of 5) intron (NR_046089, intron 3 of 5) 122376 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 418-190 chr4 96829653 96829900 + 2 NA Intergenic Intergenic 519073 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 227-45 chr10 77990105 77990258 + 2 NA intron (NM_007055, intron 21 of 30) intron (NM_007055, intron 21 of 30) 39334 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 456-123 chr16 62374646 62375086 + 2 NA Intergenic L1PREC2|LINE|L1 -338428 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 344-508 chr8 132505322 132505564 + 2 NA Intergenic MIRb|SINE|MIR -24348 NM_004519 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 292-339 chr5 13063245 13063442 + 2 NA Intergenic Intergenic -30457 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 343-47 chr10 33799543 33799854 + 2 NA Intergenic Intergenic -27018 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 304-369 chr4 21263899 21264115 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 39899 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 451-161 chr4 29896517 29896824 + 2 NA Intergenic Intergenic 682378 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 447-66 chr13 88722914 88723309 + 2 NA Intergenic LTR16B2|LTR|ERVL 96258 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 399-14 chr1 168786729 168786992 + 2 NA promoter-TSS (NR_024160) promoter-TSS (NR_024160) -81 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 313-128 chr13 96863224 96863512 + 2 NA Intergenic Intergenic 120804 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 367-436 chr8 20999850 21000120 + 2 NA Intergenic Intergenic 25999 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 292-332 chr5 2315106 2315372 + 2 NA Intergenic L1MD1|LINE|L1 -3038 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 225-259 chr5 3445263 3445437 + 2 NA intron (NR_033898, intron 2 of 4) L1M5|LINE|L1 -7466 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 302-59 chr10 115997233 115997459 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 197443 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 318-443 chr5 59852001 59852296 + 2 NA intron (NM_001165899, intron 3 of 16) MLT1E-int|LTR|ERVL-MaLR 41578 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 143-33 chr17 61624350 61624448 + 2 NA Intergenic L1MD|LINE|L1 -33180 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 262-178 chr18 5172760 5172971 + 2 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 24392 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 261-279 chr4 63082136 63082336 + 2 NA Intergenic L1P4a|LINE|L1 -920471 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 339-552 chr8 4238494 4238681 + 2 NA intron (NM_033225, intron 3 of 69) MIR|SINE|MIR 756327 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 166-14 chr11 116295160 116295282 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -344201 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 236-32 chr10 4823944 4824138 + 2 NA Intergenic L1MC|LINE|L1 -2136 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 226-8 chr1 73275544 73275734 + 2 NA Intergenic Intergenic -30531 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 357-36 chr10 63531719 63531993 + 2 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -9966 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 265-299 chr5 24585317 24585512 + 2 NA intron (NM_001362460, intron 2 of 9) intron (NM_001362460, intron 2 of 9) 59564 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 614-20 chr11 105997349 105997738 + 2 NA Intergenic Intergenic 24697 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 457-280 chrX 146251122 146251460 + 2 NA Intergenic L1MA3|LINE|L1 -223419 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 180-75 chr2 14231153 14231302 + 2 NA non-coding (NR_103814, exon 4 of 4) non-coding (NR_103814, exon 4 of 4) 169731 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 213-110 chr16 75960050 75960209 + 2 NA Intergenic L2|LINE|L2 -233639 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 374-281 chr4 71628638 71628958 + 2 NA Intergenic L1PB1|LINE|L1 155281 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 225-13 chr1 186585709 186585928 + 2 NA Intergenic Intergenic 94605 NM_000963 5743 Hs.196384 NM_000963 ENSG00000073756 PTGS2 COX-2|COX2|GRIPGHS|PGG/HS|PGHS-2|PHS-2|hCox-2 prostaglandin-endoperoxide synthase 2 protein-coding 249-126 chr15 27078268 27078413 + 2 NA intron (NM_001270873, intron 3 of 5) MLT2B4|LTR|ERVL 82979 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 286-151 chr16 86056532 86056740 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger 138289 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 307-115 chr13 23936390 23936670 + 2 NA intron (NR_073430, intron 3 of 4) intron (NR_073430, intron 3 of 4) 12785 NR_073430 400110 Hs.744780 NM_207439 ANKRD20A19P - ankyrin repeat domain 20 family member A19, pseudogene pseudo 741-49 chr5 13896607 13897322 + 2 NA intron (NM_001369, intron 15 of 78) MER103C|DNA|hAT-Charlie 47516 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 225-8 chr1 118276845 118276999 + 2 NA Intergenic LTR78|LTR|ERV1 -91694 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 185-64 chr14 85005154 85005282 + 2 NA Intergenic Intergenic -266714 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 513-94 chr16 24379894 24380261 + 2 NA Intergenic Intergenic 124524 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 413-295 chr8 35985533 35985852 + 2 NA Intergenic L1MA1|LINE|L1 -275372 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 510-224 chr5 31672686 31673038 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 33731 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 278-361 chr6 27412925 27413146 + 2 NA intron (NR_144688, intron 5 of 8) AluSp|SINE|Alu 24317 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 341-144 chr14 53571353 53571555 + 2 NA Intergenic Intergenic 377030 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 326-459 chr6 69102453 69102670 + 2 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 467279 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 312-520 chr8 92617805 92617980 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 37602 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 386-44 chr10 123662490 123662855 + 2 NA Intergenic MIRc|SINE|MIR -3683 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 205-157 chr2 183194148 183194341 + 2 NA Intergenic Intergenic 69801 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 757 chr1 89204177 89204771 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -5532 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 408-123 chr15 96546164 96546391 + 2 NA Intergenic Intergenic 212512 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 272-363 chr5 145288477 145288706 + 2 NA Intergenic L1MC3|LINE|L1 546751 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 326-585 chrX 66810987 66811152 + 2 NA Intergenic L1PB1|LINE|L1 -171771 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 286-481 chr9 81464152 81464327 + 2 NA Intergenic Intergenic 225296 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 197-116 chr20 49324556 49324695 + 2 NA Intergenic L2a|LINE|L2 43942 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 364-196 chr2 17035513 17035762 + 2 NA Intergenic L2a|LINE|L2 -369803 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 317-330 chr4 3719879 3720091 + 2 NA Intergenic Intergenic -42130 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LINC02171 - long intergenic non-protein coding RNA 2171 ncRNA 233-349 chr7 15149029 15149200 + 2 NA Intergenic L1PA15|LINE|L1 -174256 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 288-277 chr3 145541373 145541602 + 2 NA Intergenic L1PB3|LINE|L1 527698 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 378-119 chr13 64139018 64139391 + 2 NA Intergenic L1PB1|LINE|L1 -63193 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 234-182 chr2 118340949 118341144 + 2 NA Intergenic L1MA7|LINE|L1 -154660 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 332-406 chr5 28683121 28683392 + 2 NA Intergenic Intergenic -243614 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 262-152 chr16 17187592 17187758 + 2 NA intron (NM_022166, intron 5 of 11) AluSq2|SINE|Alu 53171 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 180-130 chr5 25065765 25065927 + 2 NA Intergenic Intergenic 124810 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 387-325 chr6 167094418 167094782 + 2 NA Intergenic Intergenic -17207 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 246-218 chr2 204968691 204968930 + 2 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 423335 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 518-151 chr2 182943289 182943663 + 2 NA intron (NM_013436, intron 23 of 30) intron (NM_013436, intron 23 of 30) -76839 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 527-64 chr12 118799911 118800252 + 2 NA Intergenic L1MA8|LINE|L1 33455 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 542-70 chr15 97124540 97124983 + 2 NA Intergenic AluJo|SINE|Alu 341326 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 300-308 chr4 20786283 20786512 + 2 NA intron (NM_025221, intron 2 of 7) L1PA17|LINE|L1 64271 NM_147181 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 455-304 chrX 74768621 74769038 + 2 NA intron (NM_001008537, intron 1 of 3) intron (NM_001008537, intron 1 of 3) -154205 NM_016120 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 631-54 chr18 80146515 80146909 + 2 NA Intergenic Intergenic -1212 NR_028340 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 158-13 chr10 23747680 23747776 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 53001 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 266-216 chr20 19473877 19474074 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -189379 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 336-128 chr12 40495062 40495287 + 2 NA intron (NM_173600, intron 59 of 173) intron (NM_173600, intron 59 of 173) 101780 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 283-261 chr20 31167019 31167266 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat -90522 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 297-492 chr8 127695062 127695299 + 2 NA Intergenic Intergenic 38787 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 186-85 chr2 108640809 108640947 + 2 NA intron (NM_001193484, intron 1 of 9) L1MA5|LINE|L1 -14156 NM_001193485 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 315-91 chr11 100034454 100034647 + 2 NA intron (NM_001243270, intron 8 of 23) L2c|LINE|L2 478405 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 257-168 chr19 36909161 36909308 + 2 NA intron (NM_001037232, intron 3 of 5) HAL1|LINE|L1 6805 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 294-300 chr3 90347587 90347838 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1240091 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 359-394 chr5 68185548 68185753 + 2 NA Intergenic AluSq|SINE|Alu -4226 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 114-41 chr3 103157988 103158046 + 2 NA Intergenic Intergenic 366099 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 247-313 chr5 8138429 8138619 + 2 NA Intergenic Intergenic 269376 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 284-109 chr14 28378797 28378945 + 2 NA Intergenic L1MA10|LINE|L1 386448 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 188-64 chr15 72081438 72081561 + 2 NA intron (NM_006901, intron 1 of 41) L1PREC2|LINE|L1 -32759 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 219-186 chr2 159068066 159068213 + 2 NA intron (NM_001350065, intron 4 of 27) intron (NM_001350065, intron 4 of 27) 99499 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 390-348 chr7 32195509 32195731 + 2 NA intron (NM_001322059, intron 2 of 17) FLAM_C|SINE|Alu 103708 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 259-101 chr13 84054011 84054159 + 2 NA Intergenic Intergenic -86517 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 145-37 chr17 68278325 68278408 + 2 NA intron (NM_004694, intron 1 of 5) intron (NM_004694, intron 1 of 5) 12761 NM_004694 9120 Hs.42645 NM_004694 ENSG00000108932 SLC16A6 MCT6|MCT7 solute carrier family 16 member 6 protein-coding 318-366 chr3 105464263 105464518 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 97481 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 291-446 chr8 78132265 78132422 + 2 NA Intergenic Intergenic -383997 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 361-119 chr12 118718980 118719316 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 42531 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 669-81 chr4 71536881 71537359 + 2 NA intron (NM_003759, intron 15 of 22) intron (NM_003759, intron 15 of 22) 198067 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 393-85 chr13 100748509 100748797 + 2 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 40328 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 368-399 chr6 84540088 84540285 + 2 NA Intergenic Intergenic -65257 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 410-189 chr3 51016604 51016880 + 2 NA intron (NM_004947, intron 5 of 52) (AT)n|Simple_repeat|Simple_repeat 341662 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 286-358 chr5 63492135 63492330 + 2 NA Intergenic L1PA4|LINE|L1 470060 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 322-153 chr14 58367060 58367274 + 2 NA intron (NM_002892, intron 23 of 23) intron (NM_002892, intron 23 of 23) -28763 NM_207377 387990 Hs.592307 NM_207377 ENSG00000196860 TOMM20L UNQ9438 translocase of outer mitochondrial membrane 20 like protein-coding 599-106 chr5 13488042 13488379 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -455324 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 172-24 chr11 22929901 22930021 + 2 NA Intergenic L1MA4|LINE|L1 -69487 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 752-67 chr6 58568395 58568795 + 2 NA Intergenic ALR/Alpha|Satellite|centr -607149 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 283-227 chr2 49195122 49195303 + 2 NA Intergenic Intergenic -40685 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 161-75 chr4 63633553 63633679 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 775834 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 250-401 chr7 78819549 78819743 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -189342 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 201-49 chr11 90782123 90782227 + 2 NA intron (NR_104190, intron 3 of 6) Helitron1Na_Mam|RC|Helitron 87027 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 389-250 chr3 183271223 183271593 + 2 NA 3' UTR (NM_032047, exon 2 of 2) 3' UTR (NM_032047, exon 2 of 2) 18155 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 288-203 chr2 107565278 107565493 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 35966 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 443-115 chr16 52119313 52119690 + 2 NA Intergenic L1M2|LINE|L1 34220 NR_104655 102467079 Hs.98466 NR_104655 ENSG00000261749 LINC02180 - long intergenic non-protein coding RNA 2180 ncRNA 356-330 chr3 88878463 88878661 + 2 NA Intergenic L2c|LINE|L2 -229059 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 453-242 chr7 10461213 10461509 + 2 NA intron (NR_147499, intron 2 of 2) L1MA7|LINE|L1 -241315 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 555-15 chr10 20976822 20977220 + 2 NA intron (NM_001173484, intron 3 of 6) intron (NM_001173484, intron 3 of 6) -79419 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 613-88 chr3 178278339 178278921 + 2 NA Intergenic L1MB3|LINE|L1 -140571 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 597-130 chr8 72404080 72404463 + 2 NA Intergenic Intergenic -132954 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 349-407 chr5 22429700 22429986 + 2 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -215993 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 280-216 chr2 147061703 147061887 + 2 NA Intergenic Intergenic 474738 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 514-288 chr8 119170601 119171003 + 2 NA Intergenic L2c|LINE|L2 -37561 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 325-38 chr1 215323467 215323718 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 240855 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 348-375 chr4 108984831 108985104 + 2 NA intron (NM_198721, intron 5 of 36) intron (NM_198721, intron 5 of 36) -221914 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 247-36 chr10 29911985 29912203 + 2 NA Intergenic L1ME3A|LINE|L1 147492 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 398-32 chr10 25690513 25690827 + 2 NA intron (NR_108067, intron 2 of 4) MLT1D|LTR|ERVL-MaLR 38958 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 737-47 chr20 33218238 33218853 + 2 NA intron (NM_178466, intron 1 of 6) MLT1B|LTR|ERVL-MaLR 1193 NM_178466 128861 Hs.360989 NM_178466 ENSG00000131059 BPIFA3 C20orf71|SPLUNC3 BPI fold containing family A member 3 protein-coding 217-128 chr15 92340675 92340881 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -53103 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 175-113 chr4 66787722 66787857 + 2 NA Intergenic Intergenic 510965 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 234-397 chr8 142420378 142420586 + 2 NA Intergenic L1MEf|LINE|L1 -17300 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 345-73 chr10 107211421 107211695 + 2 NA Intergenic L1PA14|LINE|L1 -46852 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 351-385 chr5 63483210 63483440 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 478967 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 319-589 chrX 110753745 110754034 + 2 NA intron (NR_159734, intron 4 of 12) Tigger9a|DNA|TcMar-Tigger 41928 NM_001367208 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 479-32 chr11 10091674 10092000 + 2 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 202370 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 205-176 chr3 5894438 5894625 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -644276 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 475-199 chr4 35870454 35870849 + 2 NA Intergenic Intergenic 373288 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 398-180 chr2 193472588 193472896 + 2 NA Intergenic MER52-int|LTR|ERV1 722897 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 538-158 chr3 143564176 143564527 + 2 NA intron (NM_173653, intron 8 of 15) intron (NM_173653, intron 8 of 15) 222105 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 284-460 chrX 101321214 101321363 + 2 NA Intergenic L1MA4A|LINE|L1 27454 NM_001145951 1678 Hs.447877 NM_004085 ENSG00000126953 TIMM8A DDP|DDP1|DFN1|MTS|TIM8 translocase of inner mitochondrial membrane 8A protein-coding 356-120 chr12 128759552 128759885 + 2 NA Intergenic Intergenic 64240 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 553-68 chr14 94414948 94415333 + 2 NA Intergenic Intergenic -24448 NM_001127702 5265 Hs.525557 NM_000295 ENSG00000197249 SERPINA1 A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT|nNIF serpin family A member 1 protein-coding 410-279 chr7 49732860 49733205 + 2 NA Intergenic Intergenic -40606 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 284-355 chr6 99144110 99144267 + 2 NA Intergenic Intergenic 19579 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 411-144 chr2 58342469 58342840 + 2 NA Intergenic L1MA4A|LINE|L1 66777 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 580-159 chr5 164345571 164346026 + 2 NA Intergenic Intergenic 121604 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 367-49 chr10 51885678 51885867 + 2 NA intron (NM_001098512, intron 4 of 17) L2c|LINE|L2 -186177 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 442-79 chr14 62567930 62568336 + 2 NA Intergenic Intergenic -428160 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 778-70 chr9 4155683 4156400 + 2 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -3858 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 333-528 chr7 15457939 15458134 + 2 NA intron (NM_001004320, intron 3 of 12) intron (NM_001004320, intron 3 of 12) 103979 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 273-290 chr3 54186536 54186752 + 2 NA intron (NM_018398, intron 2 of 37) intron (NM_018398, intron 2 of 37) 64092 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 366-377 chr6 93209002 93209327 + 2 NA Intergenic Intergenic 210395 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 175-9 chr1 108950798 108950959 + 2 NA promoter-TSS (NM_001278202) promoter-TSS (NM_001278202) -430 NM_001278202 23155 Hs.658489 NM_015127 ENSG00000121940 CLCC1 MCLC chloride channel CLIC like 1 protein-coding 364-416 chr7 78558302 78558528 + 2 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 211173 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 487-92 chr14 87242184 87242575 + 2 NA Intergenic L1ME1|LINE|L1 336601 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 586-116 chr5 7007755 7008240 + 2 NA Intergenic Intergenic -180076 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 380-389 chr8 59373256 59373596 + 2 NA Intergenic Intergenic 254216 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 492-140 chr2 133185213 133185549 + 2 NA intron (NM_207481, intron 5 of 17) L1PA16|LINE|L1 -80814 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 314-570 chr8 85855436 85855702 + 2 NA Intergenic MER6|DNA|TcMar-Tigger -27627 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 378-295 chr4 13109906 13110237 + 2 NA Intergenic HAL1|LINE|L1 374269 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 387-167 chr2 48903914 48904168 + 2 NA Intergenic Intergenic -148317 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 343-350 chr3 110933833 110934044 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 136021 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 305-489 chr6 151607077 151607370 + 2 NA intron (NM_025059, intron 9 of 10) intron (NM_025059, intron 9 of 10) -83273 NM_001122742 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 211-319 chr9 1826293 1826434 + 2 NA Intergenic Intergenic -188984 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 361-402 chr6 161564415 161564635 + 2 NA intron (NM_004562, intron 8 of 11) L2a|LINE|L2 93548 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 330-175 chr15 81246607 81246794 + 2 NA intron (NM_001352686, intron 2 of 18) L1ME3E|LINE|L1 47224 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 290-446 chr8 84980306 84980516 + 2 NA Intergenic Intergenic -126827 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 129-14 chr12 66853889 66853968 + 2 NA Intergenic Intergenic -49659 NM_001366723 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 323-363 chr4 46149586 46149783 + 2 NA Intergenic L1M5|LINE|L1 -25630 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 408-340 chr8 110986833 110987128 + 2 NA intron (NR_125416, intron 4 of 4) intron (NR_125416, intron 4 of 4) 40453 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 123-41 chr4 137748284 137748352 + 2 NA Intergenic Intergenic 202587 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 225-185 chr21 16040975 16041145 + 2 NA Intergenic MER77B|LTR|ERVL -29428 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 372-481 chr8 65260185 65260532 + 2 NA Intergenic L1MA1|LINE|L1 -80018 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 216-227 chr3 95288390 95288573 + 2 NA Intergenic Intergenic 350218 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 291-137 chr14 83715405 83715620 + 2 NA Intergenic Intergenic 1072880 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 283-477 chrX 58315581 58315762 + 2 NA Intergenic ALR/Alpha|Satellite|centr -405038 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 207-51 chr11 24407926 24408104 + 2 NA Intergenic Intergenic -89038 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 216-149 chr18 67610412 67610609 + 2 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -93790 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 342-498 chr7 98551072 98551282 + 2 NA Intergenic AluJo|SINE|Alu -66108 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 180-139 chr5 108702763 108702940 + 2 NA Intergenic LTR16C|LTR|ERVL 25410 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 375-266 chr3 77978642 77978988 + 2 NA Intergenic L1ME4a|LINE|L1 70148 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 272-349 chr5 80444334 80444506 + 2 NA intron (NR_146172, intron 8 of 20) intron (NR_146172, intron 8 of 20) 36356 NR_146173 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 190-20 chr10 93519472 93519643 + 2 NA intron (NM_018131, intron 7 of 8) intron (NM_018131, intron 7 of 8) 22945 NM_018131 55165 Hs.14559 NM_018131 ENSG00000138180 CEP55 C10orf3|CT111|MARCH|URCC6 centrosomal protein 55 protein-coding 396-244 chr4 26117973 26118212 + 2 NA Intergenic LTR88c|LTR|Gypsy? -201618 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 290-38 chr1 240067493 240067683 + 2 NA Intergenic MamRep1151|LTR?|LTR? -24295 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 231-162 chr2 55482444 55482612 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -37067 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 475-257 chr7 24607139 24607475 + 2 NA intron (NM_001303037, intron 1 of 11) intron (NM_001303037, intron 1 of 11) 33855 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 336-66 chr10 48776097 48776341 + 2 NA intron (NM_020945, intron 15 of 61) intron (NM_020945, intron 15 of 61) 90756 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 281-58 chr11 14229059 14229262 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 129325 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 282-441 chr8 55440031 55440263 + 2 NA intron (NM_052898, intron 2 of 2) L1ME3D|LINE|L1 15174 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 369-340 chr5 141272625 141272862 + 2 NA Intergenic LTR16A|LTR|ERVL 27348 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 245-254 chr4 53174170 53174379 + 2 NA intron (NM_152540, intron 4 of 8) L1MEd|LINE|L1 191787 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 141-81 chr7 104242183 104242292 + 2 NA Intergenic Intergenic -34190 NM_181747 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 220-200 chr20 6218711 6218867 + 2 NA Intergenic L2|LINE|L2 -95245 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 353-433 chr6 868128 868335 + 2 NA promoter-TSS (NR_110853) promoter-TSS (NR_110853) -267 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 275-236 chr22 49692215 49692452 + 2 NA Intergenic L1MD3|LINE|L1 -34814 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 478-124 chr18 76023587 76024003 + 2 NA Intergenic Intergenic -99203 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 285-337 chr5 59066125 59066345 + 2 NA intron (NM_006203, intron 5 of 14) L2c|LINE|L2 -26759 NM_001197221 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 311-36 chr1 225016108 225016271 + 2 NA intron (NM_001349911, intron 10 of 10) LTR66|LTR|ERVL 86514 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 537-158 chr3 74596671 74597040 + 2 NA Intergenic Intergenic -75715 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 293-172 chr19 30511743 30511955 + 2 NA intron (NM_014717, intron 2 of 4) intron (NM_014717, intron 2 of 4) 139465 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 350-292 chr21 30836836 30837058 + 2 NA Intergenic Intergenic -7188 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 286-409 chr7 28200641 28200878 + 2 NA intron (NR_034097, intron 2 of 3) intron (NR_034097, intron 2 of 3) -19964 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 260-374 chr6 61738803 61738952 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 164747 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 215-5 chr1 79340031 79340189 + 2 NA Intergenic Intergenic -333380 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 291-298 chr3 153478696 153478895 + 2 NA intron (NR_146713, intron 5 of 6) Tigger3b|DNA|TcMar-Tigger -5700 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 362-313 chr4 80453225 80453519 + 2 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 117652 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 290-488 chr9 102542145 102542317 + 2 NA intron (NR_103830, intron 1 of 4) ERVL-int|LTR|ERVL 22594 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 192-35 chr11 29877865 29878013 + 2 NA Intergenic Intergenic 104454 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 249-113 chr14 43752586 43752823 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 754579 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 290-389 chr6 77964482 77964725 + 2 NA Intergenic L1PA16|LINE|L1 311564 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 264-365 chr6 84952355 84952576 + 2 NA Intergenic Intergenic -187867 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 320-281 chr2 139394195 139394495 + 2 NA Intergenic Intergenic 497021 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 279-90 chr13 43188541 43188784 + 2 NA Intergenic Intergenic 75497 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 400-261 chr4 125174422 125174705 + 2 NA Intergenic Intergenic -141849 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 303-301 chr3 189249681 189249961 + 2 NA intron (NM_198485, intron 4 of 5) intron (NM_198485, intron 4 of 5) -9227 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 289-451 chr7 146522004 146522166 + 2 NA Intergenic Intergenic -252186 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 346-9 chr1 89137747 89137971 + 2 NA intron (NM_207398, intron 9 of 10) L1PA15|LINE|L1 -11745 NM_004120 2634 Hs.386567 NM_004120 ENSG00000162645 GBP2 - guanylate binding protein 2 protein-coding 310-579 chrX 138430650 138430878 + 2 NA Intergenic Intergenic 237029 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 330-231 chr18 66095713 66095953 + 2 NA Intergenic L1ME3G|LINE|L1 344821 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 207-65 chr12 26475885 26476016 + 2 NA intron (NM_002223, intron 44 of 56) intron (NM_002223, intron 44 of 56) 280377 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 364-306 chr4 63626591 63626907 + 2 NA Intergenic L1MA3|LINE|L1 782701 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 294-324 chr4 33567174 33567450 + 2 NA Intergenic Intergenic 472581 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 471-45 chr11 44471918 44472313 + 2 NA Intergenic MIR|SINE|MIR -93548 NM_002231 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 220-10 chr1 85638958 85639113 + 2 NA Intergenic L1M4|LINE|L1 58274 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 526-64 chr12 127524743 127525252 + 2 NA Intergenic Intergenic 111470 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 341-534 chr8 121754808 121754982 + 2 NA Intergenic Intergenic -113455 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 225-349 chr8 67562073 67562291 + 2 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 184178 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 423-273 chr7 72292024 72292284 + 2 NA intron (NM_001363460, intron 1 of 5) MADE1|DNA|TcMar-Mariner 45237 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 305-287 chr2 185934060 185934337 + 2 NA Intergenic Intergenic -134047 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 499-75 chr15 45209512 45209877 + 2 NA Intergenic AluJr|SINE|Alu -8578 NM_138356 90525 Hs.310399 NM_138356 ENSG00000138606 SHF - Src homology 2 domain containing F protein-coding 357-95 chr13 44166866 44167164 + 2 NA Intergenic L1M1|LINE|L1 -5758 NM_024058 79024 Hs.730073 NM_024058 ENSG00000139656 SMIM2 C13orf44 small integral membrane protein 2 protein-coding 340-565 chr9 27480960 27481247 + 2 NA intron (NM_024761, intron 1 of 3) L1MEd|LINE|L1 -43211 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 391-284 chr5 27502695 27503006 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 30558 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 274-133 chr14 80083059 80083244 + 2 NA Intergenic Intergenic -128268 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 550-120 chr2 136479161 136479563 + 2 NA Intergenic L1M2a1|LINE|L1 -286183 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 255-130 chr15 83744037 83744216 + 2 NA intron (NM_207517, intron 3 of 29) AluY|SINE|Alu 90003 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 189-127 chr3 86723596 86723777 + 2 NA Intergenic L1PA14|LINE|L1 241743 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 351-292 chr3 42779452 42779716 + 2 NA Intergenic Intergenic -6331 NM_144719 152206 Hs.604182 NM_144719 ENSG00000244607 CCDC13 - coiled-coil domain containing 13 protein-coding 336-512 chr7 37479522 37479817 + 2 NA Intergenic L1MB8|LINE|L1 -30343 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 426-106 chr17 72221618 72221971 + 2 NA Intergenic Intergenic 100774 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 362-153 chr14 70154524 70154750 + 2 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -32471 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 300-409 chr6 165270859 165271010 + 2 NA Intergenic Intergenic 38671 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 517-94 chr16 61279730 61280238 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -224218 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 382-95 chr13 79769233 79769472 + 2 NA Intergenic HAL1ME|LINE|L1 -35034 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 254-153 chr17 34696047 34696221 + 2 NA Intergenic L2b|LINE|L2 115385 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 155-94 chr7 42262696 42262788 + 2 NA Intergenic Intergenic -25533 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 639-109 chr7 64519188 64519742 + 2 NA TTS (NM_178558) TTS (NM_178558) 43606 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 257-331 chr5 113626674 113626906 + 2 NA Intergenic L1M3c|LINE|L1 113096 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 837-35 chr5 46247836 46248448 + 2 NA Intergenic ALR/Alpha|Satellite|centr -551762 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 337-467 chr5 153608684 153608883 + 2 NA intron (NM_001258020, intron 3 of 16) L1ME3|LINE|L1 116611 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 229-368 chr7 98399009 98399193 + 2 NA intron (NM_018842, intron 1 of 13) intron (NM_018842, intron 1 of 13) 1989 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 558-74 chr17 62881216 62881651 + 2 NA Intergenic L1ME2z|LINE|L1 -62782 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 121-38 chr3 17802290 17802400 + 2 NA Intergenic L1MC5a|LINE|L1 59401 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 729-19 chr12 60631949 60632467 + 2 NA Intergenic L1M1|LINE|L1 942838 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 314-168 chr14 51903111 51903337 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 15347 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 297-524 chrX 55942442 55942632 + 2 NA intron (NM_001324105, intron 1 of 5) intron (NM_001324105, intron 1 of 5) 34252 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 238-95 chr13 97576800 97576996 + 2 NA Intergenic L1MB7|LINE|L1 142729 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 604-123 chr4 141055011 141055508 + 2 NA intron (NM_020724, intron 1 of 6) intron (NM_020724, intron 1 of 6) 78210 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 239-36 chr10 57767928 57768118 + 2 NA Intergenic L1MC1|LINE|L1 -463464 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 419-270 chr7 34381043 34381281 + 2 NA intron (NR_033665, intron 3 of 3) MER57A-int|LTR|ERV1 -277056 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 237-200 chr2 193309444 193309620 + 2 NA Intergenic L1MCa|LINE|L1 559687 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 277-80 chr11 90941061 90941250 + 2 NA Intergenic Intergenic -71953 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 160-50 chr20 39768438 39768560 + 2 NA Intergenic L1MEc|LINE|L1 -235962 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 449-26 chr10 18188645 18188993 + 2 NA intron (NM_201593, intron 2 of 13) intron (NM_201593, intron 2 of 13) 48395 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 633-29 chr12 14778617 14779126 + 2 NA TTS (NR_027716) TTS (NR_027716) 4535 NM_177925 55766 Hs.524280 NM_018267 ENSG00000246705 H2AFJ H2AJ H2A histone family member J protein-coding 504-204 chr4 167809095 167809457 + 2 NA Intergenic Intergenic -283261 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 763-20 chr15 58269232 58269948 + 2 NA Intergenic Intergenic 131209 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 256-226 chr2 179094630 179094833 + 2 NA Intergenic L1MA2|LINE|L1 -44594 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 660-109 chr8 101938267 101938738 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -45930 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 393-306 chr6 52375059 52375353 + 2 NA intron (NM_133367, intron 1 of 1) MER117|DNA|hAT-Charlie 13055 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 239-161 chr2 18712956 18713128 + 2 NA Intergenic L1MDa|LINE|L1 -123462 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 207-235 chr5 24884452 24884616 + 2 NA Intergenic Intergenic -43951 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 365-15 chr1 104211696 104211911 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 138780 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 183-177 chrX 115464132 115464280 + 2 NA Intergenic L2a|LINE|L2 -96968 NM_001282337 5358 Hs.496622 NM_005032 ENSG00000102024 PLS3 BMND18|T-plastin plastin 3 protein-coding 482-174 chr3 188601397 188601709 + 2 NA intron (NM_001167672, intron 4 of 9) intron (NM_001167672, intron 4 of 9) -32887 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 730-28 chr2 77884485 77885158 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -31113 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 341-379 chr4 43943727 43943948 + 2 NA Intergenic L2a|LINE|L2 -73024 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 317-74 chr11 21852702 21852911 + 2 NA Intergenic Intergenic -340279 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 785-61 chr9 32280407 32281021 + 2 NA Intergenic L1PA16|LINE|L1 -103889 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 296-311 chr3 154840701 154840929 + 2 NA Intergenic Intergenic -183309 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 236-246 chr3 193245484 193245662 + 2 NA intron (NM_020386, intron 1 of 3) L1MA7|LINE|L1 3794 NR_026877 84789 Hs.676481 NM_032703 MGC2889 - uncharacterized protein MGC2889 ncRNA 513-272 chr8 33080637 33081090 + 2 NA Intergenic L1MA7|LINE|L1 359028 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 302-459 chr8 110615571 110615804 + 2 NA Intergenic MER3|DNA|hAT-Charlie 411746 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 360-421 chr6 140642411 140642729 + 2 NA Intergenic Intergenic -41244 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 257-149 chr17 63072449 63072677 + 2 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 106328 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 197-224 chr9 14351571 14351732 + 2 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) -29264 NM_001369472 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 492-129 chr2 80014915 80015275 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -148512 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 322-558 chr9 1044475 1044704 + 2 NA Intergenic Intergenic -3554 NR_110643 102800446 Hs.171043 NR_110643 LINC01230 TCONS_00015639|linc-DMRT2|lnc-DRMT2 long intergenic non-protein coding RNA 1230 ncRNA 342-543 chr8 141687932 141688155 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 98270 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 255-446 chr8 137394746 137394972 + 2 NA Intergenic L1MC1|LINE|L1 18729 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 352-315 chr3 40003457 40003789 + 2 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -96388 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 317-199 chr18 46578352 46578557 + 2 NA intron (NM_144612, intron 13 of 39) intron (NM_144612, intron 13 of 39) -19142 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 420-21 chr1 194593986 194594271 + 2 NA Intergenic Intergenic 1289383 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 346-70 chr11 40811885 40812065 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -518845 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 275-388 chr9 108601437 108601600 + 2 NA Intergenic Intergenic 254468 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 575-70 chr17 55380189 55380674 + 2 NA Intergenic Intergenic 41404 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 348-79 chr11 36995014 36995224 + 2 NA Intergenic Intergenic -396840 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 319-486 chr6 168292718 168293034 + 2 NA TTS (NM_001286351) TTS (NM_001286351) 26901 NR_104425 168002 Hs.673059 NM_214462 ENSG00000164488 DACT2 C6orf116|DAPPER2|DPR2|bA503C24.7 dishevelled binding antagonist of beta catenin 2 protein-coding 400-234 chr3 182316407 182316760 + 2 NA Intergenic L1PA13|LINE|L1 169779 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 255-290 chr4 36732608 36732815 + 2 NA Intergenic L1M5|LINE|L1 -90811 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 664-43 chr15 87100543 87101033 + 2 NA Intergenic MER68|LTR|ERVL -112362 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 235-411 chrX 93972076 93972247 + 2 NA Intergenic AluSq2|SINE|Alu 297955 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 472-264 chr6 38250210 38250558 + 2 NA intron (NM_052893, intron 10 of 11) intron (NM_052893, intron 10 of 11) -231212 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 347-559 chr9 116291316 116291540 + 2 NA intron (NM_002581, intron 9 of 21) intron (NM_002581, intron 9 of 21) 109178 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 514-5 chr1 60395527 60395869 + 2 NA Intergenic Intergenic 226987 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 267-386 chr7 26627554 26627780 + 2 NA Intergenic MIRb|SINE|MIR -10204 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 386-89 chr14 44728273 44728621 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 70679 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 270-192 chr2 125990444 125990609 + 2 NA Intergenic L1MA3|LINE|L1 127459 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 297-292 chr3 74484783 74485076 + 2 NA intron (NM_020872, intron 3 of 21) intron (NM_020872, intron 3 of 21) 36211 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 358-63 chr11 34037711 34038026 + 2 NA Intergenic Intergenic -13863 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 294-34 chr10 33944214 33944425 + 2 NA Intergenic Intergenic -171639 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 436-54 chr11 99487903 99488311 + 2 NA intron (NM_001243271, intron 2 of 20) (TTAT)n|Simple_repeat|Simple_repeat -68038 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 309-498 chr6 165894837 165895094 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -92586 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 240-264 chr21 26271469 26271615 + 2 NA Intergenic L1MA7|LINE|L1 -100414 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 336-139 chr12 81090014 81090341 + 2 NA intron (NM_024560, intron 1 of 15) intron (NM_024560, intron 1 of 15) 12098 NM_024560 79611 Hs.259559 NM_024560 ENSG00000111058 ACSS3 - acyl-CoA synthetase short chain family member 3 protein-coding 256-397 chr7 95763602 95763810 + 2 NA Intergenic L1PB3|LINE|L1 -8800 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 305-335 chr3 7450567 7450731 + 2 NA intron (NM_000844, intron 5 of 9) L1MC5|LINE|L1 84635 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 282-82 chr12 3757153 3757403 + 2 NA Intergenic Intergenic -4169 NM_001144958 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 392-319 chr8 78840548 78840936 + 2 NA TTS (NR_157588) TTS (NR_157588) 3213 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 360-324 chr4 37851457 37851695 + 2 NA intron (NM_018290, intron 12 of 13) intron (NM_018290, intron 12 of 13) 24890 NM_018290 55276 Hs.23363 NM_018290 ENSG00000169299 PGM2 MSTP006 phosphoglucomutase 2 protein-coding 780-31 chr2 228409589 228410073 + 2 NA Intergenic Intergenic 201564 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 570-103 chr2 46251635 46251938 + 2 NA Intergenic Intergenic -45621 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 318-26 chr1 143648364 143648552 + 2 NA Intergenic MER51D|LTR|ERV1 51161 NR_104078 101954269 NR_104078 ENSG00000207349 RNVU1-17 RNU1-127|vU1.17 RNA, variant U1 small nuclear 17 snRNA 344-196 chr18 2144522 2144835 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 426827 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 304-80 chr11 70647587 70647776 + 2 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) 14160 NM_133266 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 128-20 chr15 59988431 59988532 + 2 NA Intergenic MIR|SINE|MIR -15830 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 496-233 chr6 41020791 41021141 + 2 NA intron (NR_110873, intron 1 of 5) MLT1A0|LTR|ERVL-MaLR 2314 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 394-331 chr8 109825878 109826205 + 2 NA Intergenic Intergenic -134250 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 266-253 chr3 89533146 89533376 + 2 NA Intergenic Intergenic 425640 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 140-50 chr3 116223242 116223378 + 2 NA intron (NM_001318915, intron 1 of 8) L2a|LINE|L2 -136714 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 382-399 chr8 16383966 16384254 + 2 NA Intergenic Intergenic -191319 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 227-206 chr20 53951566 53951776 + 2 NA intron (NM_001366297, intron 8 of 8) MER5A1|DNA|hAT-Charlie -75962 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 317-165 chr15 49709063 49709314 + 2 NA Intergenic L1ME3Cz|LINE|L1 88140 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 308-22 chr1 97042179 97042418 + 2 NA Intergenic L1PA15|LINE|L1 -53625 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 199-224 chr7 37462099 37462256 + 2 NA Intergenic Intergenic -12851 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 112-36 chr4 95886914 95887010 + 2 NA Intergenic Intergenic 46869 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 316-185 chr15 58967216 58967529 + 2 NA Intergenic Intergenic -20291 NM_001330331 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 265-347 chr6 155359910 155360091 + 2 NA Intergenic L1MA7|LINE|L1 -45516 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 242-342 chr6 48158804 48158972 + 2 NA Intergenic L1M4b|LINE|L1 -90199 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 137-97 chr9 27278290 27278408 + 2 NA intron (NR_026679, intron 4 of 16) intron (NR_026679, intron 4 of 16) 4444 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 392-327 chr8 96711877 96712184 + 2 NA intron (NM_016134, intron 1 of 7) THE1C-int|LTR|ERVL-MaLR 66788 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 220-124 chr16 76123645 76123825 + 2 NA Intergenic Intergenic -153666 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 571-186 chr9 26129676 26130130 + 2 NA Intergenic Intergenic 63228 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 664-59 chr2 145818411 145818870 + 2 NA Intergenic Intergenic -768417 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 303-238 chr2 226611373 226611628 + 2 NA Intergenic Intergenic 47293 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 428-82 chr16 27815745 27816086 + 2 NA intron (NM_001109763, intron 5 of 6) AluJr|SINE|Alu 72242 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 270-380 chr8 67946426 67946608 + 2 NA Intergenic Intergenic -5529 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 552-113 chr2 167280892 167281256 + 2 NA Intergenic L1MC3|LINE|L1 93702 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 235-173 chr2 78540897 78541039 + 2 NA Intergenic L1MD|LINE|L1 -4563 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 150-88 chr5 18470287 18470432 + 2 NA Intergenic Intergenic 663085 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 496-82 chr14 58572992 58573460 + 2 NA Intergenic AluSx|SINE|Alu -60842 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 337-220 chr18 37003766 37003936 + 2 NA intron (NR_136303, intron 6 of 13) L1PB1|LINE|L1 -80037 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 427-268 chr8 127543139 127543481 + 2 NA Intergenic Intergenic -61171 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 362-44 chr10 8537922 8538152 + 2 NA Intergenic Intergenic 56354 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 493-67 chr12 132194002 132194386 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -4499 NR_146452 100996246 NR_146452 ENSG00000256576 LINC02361 - long intergenic non-protein coding RNA 2361 ncRNA 331-522 chr8 57835127 57835389 + 2 NA Intergenic L1M4|LINE|L1 89109 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 431-173 chr3 31027630 31027870 + 2 NA Intergenic Intergenic -133089 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 112-22 chr18 13792941 13793013 + 2 NA Intergenic L1ME3A|LINE|L1 -31172 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 603-86 chr2 77898308 77898766 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -17397 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 359-309 chr3 25268778 25269053 + 2 NA intron (NM_001290216, intron 4 of 10) L2a|LINE|L2 -71887 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 207-302 chr8 124858262 124858410 + 2 NA Intergenic MIR|SINE|MIR -36278 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 761-4 chr1 84791267 84791768 + 2 NA Intergenic L1ME3E|LINE|L1 -101049 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 318-579 chr9 96821363 96821640 + 2 NA intron (NM_001001662, intron 5 of 5) intron (NM_001001662, intron 5 of 5) 33013 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 409-188 chr22 28271970 28272278 + 2 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -187745 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 298-190 chr19 43971335 43971566 + 2 NA Intergenic L1PA11|LINE|L1 -12720 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 262-448 chr9 28420513 28420706 + 2 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 298696 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 314-143 chr13 42730029 42730319 + 2 NA Intergenic MIRc|SINE|MIR -51376 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 225-399 chr9 106209334 106209514 + 2 NA Intergenic Intergenic -391504 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 468-91 chr15 60538425 60538781 + 2 NA intron (NM_134261, intron 2 of 10) intron (NM_134261, intron 2 of 10) 53923 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 594-118 chr5 110415958 110416388 + 2 NA Intergenic Intergenic 97742 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 681-86 chr8 105916949 105917484 + 2 NA intron (NR_125796, intron 2 of 7) L1PA17|LINE|L1 143287 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 425-129 chr19 58069390 58069712 + 2 NA 3' UTR (NM_001164529, exon 4 of 4) 3' UTR (NM_001164529, exon 4 of 4) 10269 NM_003436 7694 Hs.85863 NM_003436 ENSG00000176293 ZNF135 ZNF61|ZNF78L1|pHZ-17|pT3 zinc finger protein 135 protein-coding 479-52 chr13 103812146 103812496 + 2 NA Intergenic Intergenic 387121 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 164-64 chr20 54714296 54714410 + 2 NA Intergenic Intergenic 238760 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 348-461 chr6 102085552 102085860 + 2 NA Intergenic Intergenic 686721 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 243-79 chr11 109873576 109873794 + 2 NA Intergenic L1MA6|LINE|L1 -219707 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 281-363 chr5 78759561 78759810 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -110913 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 320-263 chr2 78754680 78754978 + 2 NA Intergenic L1MC5|LINE|L1 209298 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 304-268 chr2 121800177 121800434 + 2 NA Intergenic L1MB8|LINE|L1 44654 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 344-404 chr5 158292609 158292800 + 2 NA Intergenic Intergenic 117069 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 237-132 chr16 54605674 54605879 + 2 NA Intergenic L1MD2|LINE|L1 -235077 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 302-384 chr6 68837062 68837266 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 201882 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 285-303 chr4 47402508 47402698 + 2 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 61099 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 273-151 chr15 97571865 97572099 + 2 NA Intergenic Intergenic -11284 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 190-141 chr5 12290751 12290852 + 2 NA Intergenic Intergenic -284056 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 241-123 chr15 24730298 24730480 + 2 NA Intergenic MER30|DNA|hAT-Charlie 54995 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 386-311 chr6 109003247 109003626 + 2 NA intron (NM_014454, intron 1 of 9) intron (NM_014454, intron 1 of 9) 5552 NM_001199934 27244 Hs.591336 NM_014454 ENSG00000080546 SESN1 PA26|SEST1 sestrin 1 protein-coding 349-511 chr8 128251885 128252092 + 2 NA Intergenic Intergenic 101872 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 343-229 chr2 38910860 38911143 + 2 NA Intergenic MIRc|SINE|MIR -8362 NM_001145451 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 216-164 chr2 41079607 41079809 + 2 NA Intergenic Intergenic -567273 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 190-202 chrX 145771107 145771255 + 2 NA Intergenic L1M6|LINE|L1 -46648 NM_001144003 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 366-477 chrX 26079971 26080277 + 2 NA Intergenic Intergenic -58219 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 704-24 chr13 97074467 97075012 + 2 NA Intergenic L1MB7|LINE|L1 -80009 NM_001346195 27199 Hs.352218 NM_080818 ENSG00000165621 OXGR1 GPR80|GPR99|P2RY15|P2Y15|aKGR oxoglutarate receptor 1 protein-coding 582-36 chr14 49774172 49774690 + 2 NA intron (NM_014315, intron 2 of 12) intron (NM_014315, intron 2 of 12) 6278 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 229-350 chr7 17148086 17148269 + 2 NA Intergenic Intergenic -150475 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 780-38 chr3 84478839 84479377 + 2 NA Intergenic L1MA5|LINE|L1 390467 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 312-410 chr5 31677165 31677347 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 38125 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 349-391 chr4 158392405 158392675 + 2 NA Intergenic Intergenic -129174 NM_001363776 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 385-272 chr4 76474997 76475341 + 2 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 39940 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 222-290 chr5 58430471 58430633 + 2 NA Intergenic Intergenic 29534 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 333-228 chr2 32995899 32996126 + 2 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 49059 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 349-243 chr2 21516254 21516479 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 194286 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 241-423 chr9 30905463 30905656 + 2 NA Intergenic Intergenic 475931 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 286-329 chr4 176781456 176781652 + 2 NA intron (NM_005429, intron 1 of 6) intron (NM_005429, intron 1 of 6) 11368 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 428-133 chr2 102790278 102790624 + 2 NA intron (NM_001321346, intron 3 of 3) intron (NM_001321346, intron 3 of 3) 28420 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 414-190 chr20 59641308 59641566 + 2 NA intron (NM_001281507, intron 1 of 12) MLT2B1|LTR|ERVL 12828 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 326-438 chr5 170396452 170396735 + 2 NA intron (NR_109899, intron 1 of 2) MER4D|LTR|ERV1 7100 NR_109899 101928033 Hs.709167 NR_109899 ENSG00000253647 CTD-2270F17.1 - uncharacterized LOC101928033 ncRNA 282-154 chr16 5349083 5349346 + 2 NA Intergenic L1MB1|LINE|L1 -251394 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 433-291 chr8 131648725 131648991 + 2 NA Intergenic L2|LINE|L2 -255235 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 396-136 chr18 64671973 64672309 + 2 NA Intergenic Intergenic -412086 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 472-241 chr5 15776919 15777205 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -158120 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 558-86 chr19 36622862 36623336 + 2 NA intron (NM_001256838, intron 4 of 4) intron (NM_001256838, intron 4 of 4) 17786 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 193-18 chr1 190950698 190950854 + 2 NA Intergenic Intergenic 277722 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 313-397 chr4 97734318 97734593 + 2 NA intron (NM_174952, intron 9 of 10) L1PA13|LINE|L1 367529 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 302-183 chr18 42416956 42417175 + 2 NA intron (NR_046174, intron 4 of 9) intron (NR_046174, intron 4 of 9) 230397 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 313-483 chr6 162228800 162228960 + 2 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -498252 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 321-528 chr7 53459096 53459271 + 2 NA Intergenic L1ME4b|LINE|L1 352748 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 323-482 chr7 27390750 27390951 + 2 NA Intergenic L2a|LINE|L2 -143621 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 319-459 chr6 66150033 66150336 + 2 NA Intergenic L1MA9|LINE|L1 362305 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 263-302 chr4 114103202 114103430 + 2 NA Intergenic Intergenic -123669 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 583-73 chr18 6350085 6350466 + 2 NA intron (NM_001365765, intron 1 of 18) L1MB4|LINE|L1 8755 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 466-165 chr22 44238062 44238491 + 2 NA Intergenic L1MD1|LINE|L1 57351 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 223-260 chr4 166980172 166980387 + 2 NA intron (NM_001204355, intron 2 of 8) L2c|LINE|L2 254147 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 553-190 chr5 30741952 30742347 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -451537 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 195-41 chr11 115723286 115723449 + 2 NA Intergenic MIR|SINE|MIR 11395 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 317-153 chr14 72181463 72181685 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 248047 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 135-2 chr1 82242806 82242894 + 2 NA Intergenic Intergenic 440397 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 202-172 chr3 116600164 116600364 + 2 NA Intergenic Intergenic 47791 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 342-320 chr3 87543271 87543472 + 2 NA Intergenic Intergenic -249335 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 144-70 chr4 89404105 89404206 + 2 NA Intergenic Intergenic -96355 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 276-27 chr1 186939186 186939341 + 2 NA intron (NM_024420, intron 9 of 17) intron (NM_024420, intron 9 of 17) 110314 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 404-137 chr18 4394656 4394927 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 60475 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 212-80 chr12 32065835 32066039 + 2 NA Intergenic SVA_B|Retroposon|SVA -40870 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 333-18 chr1 78351839 78352108 + 2 NA intron (NR_027310, intron 4 of 5) intron (NR_027310, intron 4 of 5) 122374 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 393-115 chr16 48706954 48707280 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -96937 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 242-254 chr4 31736781 31736937 + 2 NA Intergenic Intergenic 230315 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 271-64 chr11 13792912 13793159 + 2 NA intron (NR_149108, intron 3 of 3) intron (NR_149108, intron 3 of 3) 8649 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 225-2 chr1 48262931 48263092 + 2 NA Intergenic Intergenic 40295 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 417-42 chr10 106623961 106624297 + 2 NA intron (NM_001206569, intron 19 of 25) L2a|LINE|L2 483964 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 307-292 chr3 11122665 11122831 + 2 NA Intergenic L1MC5|LINE|L1 -14490 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 341-338 chr3 88399358 88399553 + 2 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 60999 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 284-2 chr1 47403031 47403183 + 2 NA intron (NR_126355, intron 3 of 4) intron (NR_126355, intron 3 of 4) -13178 NM_012186 2301 Hs.112968 NM_012186 ENSG00000186790 FOXE3 AAT11|ASGD2|CTRCT34|FKHL12|FREAC8 forkhead box E3 protein-coding 319-514 chr7 150631650 150631963 + 2 NA intron (NM_001244072, intron 1 of 2) intron (NM_001244072, intron 1 of 2) 579 NM_001244071 474344 Hs.647105 NM_024711 ENSG00000133561 GIMAP6 IAN-2|IAN-6|IAN2|IAN6 GTPase, IMAP family member 6 protein-coding 268-304 chr5 13774842 13774996 + 2 NA intron (NM_001369, intron 55 of 78) intron (NM_001369, intron 55 of 78) 169561 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 562-202 chr7 44524828 44525189 + 2 NA intron (NM_013389, intron 10 of 19) L1M4c|LINE|L1 16322 NM_001300967 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 201-245 chr8 124001459 124001607 + 2 NA intron (NM_001039112, intron 12 of 40) MIRc|SINE|MIR 39249 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 132-46 chr20 58497752 58497849 + 2 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 17138 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 246-59 chr10 123775940 123776167 + 2 NA intron (NM_198148, intron 7 of 13) intron (NM_198148, intron 7 of 13) 109698 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 420-61 chr12 17907595 17907860 + 2 NA Intergenic L1P4a|LINE|L1 182466 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 240-304 chr3 186876935 186877108 + 2 NA Intergenic L1ME2|LINE|L1 -15653 NR_046662 100874095 Hs.638968 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 520-41 chr10 108037948 108038436 + 2 NA intron (NR_125760, intron 4 of 4) LTR41|LTR|ERVL 31101 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 718-17 chr11 96924925 96925347 + 2 NA Intergenic L1MD|LINE|L1 416711 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 305-509 chr7 67601763 67601928 + 2 NA Intergenic MIRc|SINE|MIR 265869 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 345-189 chr16 55287242 55287572 + 2 NA Intergenic L1MEc|LINE|L1 -37152 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 307-163 chr15 80330180 80330345 + 2 NA intron (NR_033833, intron 1 of 2) L1ME4a|LINE|L1 11543 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 559-30 chr12 5530607 5530969 + 2 NA Intergenic Tigger4a|DNA|TcMar-Tigger 36656 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 376-374 chr7 52671776 52672094 + 2 NA Intergenic Intergenic -363698 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 518-241 chr5 112093608 112093960 + 2 NA Intergenic L1MA2|LINE|L1 -66742 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 208-260 chr8 65796661 65796794 + 2 NA intron (NM_001242318, intron 1 of 12) L1ME2|LINE|L1 -7670 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 640-83 chr3 118161218 118161693 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -470530 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 300-335 chr4 101771587 101771765 + 2 NA Intergenic L1PA16|LINE|L1 -18931 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 241-322 chr6 6536119 6536285 + 2 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -52518 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 383-324 chr5 105461433 105461745 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 362115 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 218-216 chr3 86826320 86826492 + 2 NA Intergenic L2a|LINE|L2 164743 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 383-149 chr16 84810962 84811290 + 2 NA Intergenic Intergenic -8859 NM_031476 83716 Hs.513779 NM_031476 ENSG00000103196 CRISPLD2 CRISP11|LCRISP2|LGL1 cysteine rich secretory protein LCCL domain containing 2 protein-coding 416-304 chr7 12297201 12297555 + 2 NA Intergenic Intergenic 86084 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 398-250 chr4 138342836 138343098 + 2 NA intron (NR_051987, intron 1 of 2) intron (NR_051987, intron 1 of 2) 33256 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 381-53 chr10 66423930 66424172 + 2 NA intron (NM_001127384, intron 11 of 17) L1MEd|LINE|L1 -501985 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 263-29 chr1 194429279 194429489 + 2 NA Intergenic Intergenic 1124639 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 310-65 chr10 121208488 121208759 + 2 NA Intergenic Intergenic 322691 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 198-222 chr6 158859713 158859880 + 2 NA Intergenic AluJr|SINE|Alu -2164 NR_028496 202459 Hs.487035 NM_145303 ENSG00000243775 OSTCP1 DC2L|OSTCL oligosaccharyltransferase complex subunit pseudogene 1 pseudo 172-18 chr10 89466125 89466254 + 2 NA intron (NR_120614, intron 2 of 2) MIRb|SINE|MIR 10198 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 184-106 chr20 15969946 15970051 + 2 NA intron (NM_001351663, intron 13 of 17) L1MEg|LINE|L1 15884 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 403-253 chr5 93520465 93520790 + 2 NA intron (NR_109825, intron 5 of 8) intron (NR_109825, intron 5 of 8) 50716 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 610-113 chr3 41124114 41124520 + 2 NA Intergenic AluSx4|SINE|Alu -75188 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 503-236 chr5 124998547 124999005 + 2 NA Intergenic AluJo|SINE|Alu -38055 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 393-273 chr5 30554786 30555142 + 2 NA Intergenic MIR|SINE|MIR -638722 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 233-222 chr3 4011288 4011470 + 2 NA Intergenic Intergenic -210504 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 258-141 chr15 45504534 45504756 + 2 NA intron (NM_001321036, intron 3 of 3) intron (NM_001321036, intron 3 of 3) -6491 NR_022014 283651 Hs.574240 NM_173609 HMGN2P46 C15orf21|D-PCa-2 high mobility group nucleosomal binding domain 2 pseudogene 46 pseudo 489-114 chr18 1426600 1427045 + 2 NA Intergenic Intergenic -67193 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 339-51 chr10 18199457 18199633 + 2 NA intron (NM_201593, intron 2 of 13) L2a|LINE|L2 59121 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 204-116 chr17 29035012 29035159 + 2 NA Intergenic Intergenic -8056 NM_016518 51268 Hs.462585 NM_016518 ENSG00000179761 PIPOX LPIPOX pipecolic acid and sarcosine oxidase protein-coding 282-496 chr9 137753209 137753442 + 2 NA intron (NM_001354263, intron 7 of 26) intron (NM_001354263, intron 7 of 26) 35081 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 236-378 chr9 29143622 29143764 + 2 NA intron (NM_001354574, intron 1 of 5) L1P3|LINE|L1 68606 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 292-218 chr2 79274446 79274662 + 2 NA Intergenic L1ME4a|LINE|L1 -114801 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 243-186 chr19 30497549 30497723 + 2 NA intron (NM_014717, intron 2 of 4) intron (NM_014717, intron 2 of 4) 125252 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 202-173 chr3 118552093 118552252 + 2 NA intron (NR_135547, intron 2 of 3) intron (NR_135547, intron 2 of 3) -89596 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 215-157 chr2 155516170 155516381 + 2 NA Intergenic Intergenic 738656 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 403-325 chr9 98896126 98896513 + 2 NA Intergenic Intergenic -47588 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 207-314 chr9 75650933 75651067 + 2 NA Intergenic Intergenic -239644 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 483-233 chr6 168041254 168041724 + 2 NA intron (NM_005355, intron 6 of 7) intron (NM_005355, intron 6 of 7) 23616 NM_005355 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 203-29 chr10 75278129 75278285 + 2 NA Intergenic L1M4|LINE|L1 -18176 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 360-224 chr2 81731449 81731699 + 2 NA Intergenic MIR|SINE|MIR -264628 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 346-489 chr8 87109189 87109380 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 242869 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 383-363 chr7 89750421 89750642 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -368869 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 141-54 chr3 58534746 58534826 + 2 NA intron (NM_003500, intron 2 of 14) intron (NM_003500, intron 2 of 14) 2404 NM_003500 8309 Hs.444959 NM_003500 ENSG00000168306 ACOX2 BCOX|BRCACOX|BRCOX|CBAS6|THCCox acyl-CoA oxidase 2 protein-coding 219-92 chr13 90027375 90027563 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 92248 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 255-78 chr12 56563626 56563787 + 2 NA intron (NM_002898, intron 2 of 13) AluJo|SINE|Alu 41886 NM_002898 5939 Hs.505729 NM_002898 ENSG00000076067 RBMS2 SCR3 RNA binding motif single stranded interacting protein 2 protein-coding 400-240 chr4 33969742 33969974 + 2 NA intron (NR_125902, intron 3 of 4) L1MA7|LINE|L1 70035 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 141-40 chr2 52996383 52996489 + 2 NA Intergenic L2c|LINE|L2 -293821 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 344-47 chr10 41862226 41862506 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 505679 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 294-91 chr12 108487624 108487781 + 2 NA Intergenic L1PA16|LINE|L1 -14013 NR_120483 102723562 Hs.455693 NR_120483 ENSG00000247213 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 462-183 chr3 96943764 96944145 + 2 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 129360 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 407-69 chr12 95823036 95823357 + 2 NA non-coding (NR_135016, exon 2 of 2) non-coding (NR_135016, exon 2 of 2) 20099 NR_135016 105369920 Hs.145556 NR_135016 ENSG00000258292 LINC02410 - long intergenic non-protein coding RNA 2410 ncRNA 516-180 chr3 153122098 153122362 + 2 NA Intergenic L1P4|LINE|L1 -39996 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 360-364 chr5 51605143 51605478 + 2 NA Intergenic L1MEf|LINE|L1 221862 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 708-58 chr5 41777817 41778404 + 2 NA intron (NR_157114, intron 12 of 15) Tigger15a|DNA|TcMar-Tigger 65547 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 431-302 chr8 129500837 129501223 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -16888 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 164-103 chr7 17029573 17029695 + 2 NA Intergenic Intergenic -147651 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 555-159 chr5 54704261 54704747 + 2 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) -1180 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 560-145 chr6 48325145 48325551 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -256659 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 316-266 chr2 75720290 75720512 + 2 NA Intergenic L1MC5|LINE|L1 -9486 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 371-277 chr4 64214514 64214830 + 2 NA Intergenic L1MC3|LINE|L1 194778 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 301-55 chr10 125523564 125523789 + 2 NA Intergenic LTR33|LTR|ERVL -50695 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 300-233 chr20 11296044 11296307 + 2 NA Intergenic Intergenic -22792 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 228-130 chr17 54015040 54015189 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 192187 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 234-365 chr7 49391648 49391834 + 2 NA Intergenic Intergenic -381897 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 552-74 chr15 81974486 81974862 + 2 NA Intergenic L1M6|LINE|L1 71344 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 524-253 chr8 49053916 49054232 + 2 NA promoter-TSS (NM_001256596) promoter-TSS (NM_001256596) -262 NM_001256596 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 375-307 chr4 161245943 161246207 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -776658 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 548-65 chr13 99076413 99076751 + 2 NA intron (NM_015296, intron 1 of 55) intron (NM_015296, intron 1 of 55) 10112 NM_001318849 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 248-90 chr12 99089805 99089980 + 2 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) -3467 NR_110095 101928937 Hs.555499 NR_110095 ENSG00000258039 LOC101928937 - uncharacterized LOC101928937 ncRNA 267-299 chr4 124228319 124228576 + 2 NA Intergenic L1M1|LINE|L1 329987 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 253-38 chr1 238651514 238651711 + 2 NA Intergenic L1ME3|LINE|L1 -165595 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 368-395 chr6 78743719 78743992 + 2 NA Intergenic L1MA4A|LINE|L1 -123696 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 414-185 chr20 46890330 46890668 + 2 NA Intergenic Intergenic -4125 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 127-62 chr4 88014798 88014912 + 2 NA intron (NR_156488, intron 1 of 13) MIRb|SINE|MIR 7220 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 390-98 chr14 60171391 60171736 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -1699 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 327-15 chr1 117207549 117207813 + 2 NA intron (NM_024626, intron 1 of 5) L2b|LINE|L2 3246 NM_024626 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 348-193 chr17 76802466 76802774 + 2 NA intron (NR_110837, intron 1 of 2) AluSz|SINE|Alu 3576 NR_110837 101928514 Hs.617206 NR_110837 ENSG00000267065 LINC02080 - long intergenic non-protein coding RNA 2080 ncRNA 194-33 chr11 97465120 97465244 + 2 NA Intergenic LTR16B1|LTR|ERVL 956757 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 310-391 chr5 11284101 11284403 + 2 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 304665 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 300-65 chr11 43296359 43296519 + 2 NA Intergenic L1MA4A|LINE|L1 -15557 NM_001243747 8539 Hs.435771 NM_006595 ENSG00000166181 API5 AAC-11|AAC11 apoptosis inhibitor 5 protein-coding 476-261 chr8 65795631 65796028 + 2 NA intron (NM_001242318, intron 1 of 12) intron (NM_001242318, intron 1 of 12) -6772 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 444-175 chr4 86629761 86630106 + 2 NA intron (NM_080685, intron 1 of 47) AluJr|SINE|Alu 35618 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 402-6 chr1 40468486 40468843 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -8626 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 269-421 chr9 29079655 29079912 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 132516 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 344-448 chr7 5063139 5063343 + 2 NA intron (NM_001204513, intron 4 of 5) MER11C|LTR|ERVK -8819 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 171-132 chr8 17803879 17804014 + 2 NA Intergenic L1ME4b|LINE|L1 -2367 NM_001363061 57509 Hs.7946 NM_020749 ENSG00000129422 MTUS1 ATBP|ATIP|ATIP3|ICIS|MP44|MTSG1 microtubule associated scaffold protein 1 protein-coding 225-223 chr3 133972298 133972452 + 2 NA intron (NM_005630, intron 3 of 13) L1MEd|LINE|L1 -42563 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 320-282 chr2 143131004 143131234 + 2 NA intron (NM_018460, intron 1 of 13) intron (NM_018460, intron 1 of 13) 1700 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 757-26 chr18 69348779 69349365 + 2 NA Intergenic Intergenic -51816 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 422-148 chr2 89801464 89801739 + 2 NA Intergenic Intergenic -163694 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 294-77 chr12 29018457 29018677 + 2 NA Intergenic Intergenic -130711 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 382-119 chr15 34017605 34017971 + 2 NA intron (NM_020371, intron 1 of 5) intron (NM_020371, intron 1 of 5) 21416 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 478-197 chr3 136903065 136903388 + 2 NA intron (NM_001291999, intron 1 of 3) L1MA4A|LINE|L1 -27276 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 324-258 chr2 56849599 56849832 + 2 NA Intergenic Intergenic -663945 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 711-30 chr19 36751729 36752281 + 2 NA intron (NM_001267779, intron 3 of 3) L1MEd|LINE|L1 20802 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 290-216 chr2 120136923 120137190 + 2 NA intron (NM_001330310, intron 18 of 24) L1MA3|LINE|L1 86344 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 280-135 chr15 34647156 34647330 + 2 NA Intergenic Intergenic 8521 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 336-507 chr7 25959689 25959917 + 2 NA Intergenic Intergenic -9817 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 322-150 chr14 38093960 38094247 + 2 NA Intergenic L1M3c|LINE|L1 -113801 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 299-47 chr10 34024110 34024340 + 2 NA Intergenic Intergenic -251545 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 392-207 chr3 100244175 100244398 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -16706 NM_018309 55773 Hs.477003 NM_018309 ENSG00000036054 TBC1D23 NS4ATP1|PCH11 TBC1 domain family member 23 protein-coding 327-211 chr18 13923459 13923710 + 2 NA Intergenic Intergenic -7877 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 496-156 chr2 241028183 241028551 + 2 NA intron (NM_001080437, intron 1 of 31) L1MB3|LINE|L1 29749 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 269-385 chr7 71356780 71356957 + 2 NA intron (NM_022479, intron 2 of 10) AluSx|SINE|Alu -49098 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 421-56 chr12 90179942 90180313 + 2 NA Intergenic L1ME3F|LINE|L1 -113191 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 234-394 chr8 131307074 131307192 + 2 NA Intergenic L1M2|LINE|L1 -266224 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 854-27 chr21 28650480 28651125 + 2 NA Intergenic L2a|LINE|L2 111484 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 666 chr1 14074827 14075455 + 2 NA Intergenic Intergenic 325726 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 609-118 chr6 154236627 154237076 + 2 NA intron (NM_015553, intron 5 of 11) intron (NM_015553, intron 5 of 11) 93230 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 299-198 chr2 39678384 39678574 + 2 NA intron (NM_152390, intron 1 of 3) L1MB5|LINE|L1 12562 NM_152390 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 525-125 chr2 114865228 114865656 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -31894 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 462-46 chr11 50233873 50234219 + 2 NA Intergenic Intergenic 64416 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 363-311 chr4 19044240 19044439 + 2 NA Intergenic Intergenic -1022464 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 231-84 chr13 59502164 59502303 + 2 NA Intergenic L1MC4a|LINE|L1 -510485 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 264-246 chr20 58184425 58184644 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 33632 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 227-288 chr5 64810395 64810579 + 2 NA intron (NM_005869, intron 10 of 13) L1MA7|LINE|L1 41557 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 196-139 chr2 177539195 177539356 + 2 NA 3' UTR (NM_003659, exon 20 of 20) 3' UTR (NM_003659, exon 20 of 20) 13521 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 667-62 chr3 19822760 19823232 + 2 NA Intergenic Intergenic 111221 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 613-2 chr1 12653895 12654369 + 2 NA intron (NM_001013630, intron 2 of 3) MER52-int|LTR|ERV1 9585 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 196-123 chr2 56974912 56975019 + 2 NA Intergenic L1MA8|LINE|L1 -789195 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 318-8 chr1 38341755 38341950 + 2 NA Intergenic L1ME3Cz|LINE|L1 -127085 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 325-118 chr12 2613586 2613837 + 2 NA intron (NM_001129840, intron 29 of 46) intron (NM_001129840, intron 29 of 46) 58509 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 436-233 chr5 22230816 22231162 + 2 NA intron (NM_001364104, intron 2 of 13) Eulor8|DNA|TcMar? -17139 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 248-176 chr2 31793010 31793190 + 2 NA TTS (NR_146994) TTS (NR_146994) 10880 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 208-190 chr4 94105412 94105561 + 2 NA Intergenic Intergenic 102070 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 492-226 chr6 40229774 40230146 + 2 NA Intergenic LTR39|LTR|ERV1 126046 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 331-426 chr5 94975919 94976175 + 2 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 105819 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 309-407 chr4 119268897 119269057 + 2 NA intron (NM_001371399, intron 12 of 16) intron (NM_001371399, intron 12 of 16) 31668 NM_001001701 401152 Hs.173705 NM_001001701 ENSG00000164096 C4orf3 ALN|HCVFTP1 chromosome 4 open reading frame 3 protein-coding 318-425 chr5 7969476 7969721 + 2 NA Intergenic Intergenic 100450 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 296-172 chr16 50842991 50843177 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -35689 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 151-34 chr2 44253145 44253280 + 2 NA Intergenic L1MB1|LINE|L1 -22268 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 239-262 chr3 166715317 166715498 + 2 NA Intergenic MIRb|SINE|MIR -183276 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 352-166 chr15 96613336 96613630 + 2 NA Intergenic L1MB7|LINE|L1 168171 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 206-56 chr12 40093392 40093557 + 2 NA intron (NM_052885, intron 1 of 9) L2a|LINE|L2 12607 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 543-79 chr15 24619680 24619984 + 2 NA Intergenic L1PA13|LINE|L1 -55562 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 351-185 chr18 12710072 12710365 + 2 NA intron (NM_147163, intron 2 of 6) AluY|SINE|Alu 7176 NM_020232 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 484-54 chr12 126857418 126857711 + 2 NA Intergenic Intergenic 17126 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 221-199 chr3 117219637 117219796 + 2 NA Intergenic Intergenic 298285 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 369-98 chr13 93193864 93194154 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -32798 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 294-213 chr2 59941594 59941790 + 2 NA Intergenic MIR|SINE|MIR 441344 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 293-393 chr7 20459917 20460148 + 2 NA Intergenic Intergenic -128270 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 296-455 chr8 36347258 36347528 + 2 NA Intergenic L1MB5|LINE|L1 -436981 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 333-399 chr4 74438380 74438606 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 -6643 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 244-284 chr5 3834052 3834200 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 238294 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 368-318 chr4 21279470 21279766 + 2 NA intron (NM_147182, intron 2 of 8) L2a|LINE|L2 24288 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 383-269 chr4 17987920 17988237 + 2 NA intron (NR_158566, intron 1 of 5) THE1B|LTR|ERVL-MaLR 33677 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 502-212 chr5 17952906 17953342 + 2 NA Intergenic Charlie11|DNA|hAT-Charlie 145850 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 206-8 chr1 95204594 95204721 + 2 NA intron (NR_125948, intron 3 of 4) L2a|LINE|L2 29325 NR_125949 101928118 Hs.656443 NR_125948 ENSG00000226026 LOC101928118 - uncharacterized LOC101928118 ncRNA 205-80 chr14 43891913 43892058 + 2 NA Intergenic L2a|LINE|L2 615298 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 569-123 chr3 187447028 187447480 + 2 NA intron (NR_146716, intron 1 of 3) MER70A|LTR|ERVL 208 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 536-142 chr2 224257247 224257687 + 2 NA Intergenic Intergenic 144527 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 419-167 chr21 21397014 21397288 + 2 NA intron (NM_001352592, intron 10 of 18) MER52A|LTR|ERV1 249989 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 285-181 chr19 52325813 52326011 + 2 NA TTS (NM_001297624) TTS (NM_001297624) -10331 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 596-59 chr14 39568020 39568400 + 2 NA Intergenic Intergenic -135710 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 481-71 chr12 38585088 38585351 + 2 NA Intergenic Intergenic 268445 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 395-52 chr11 30546390 30546743 + 2 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 33927 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 212-172 chr2 143384963 143385138 + 2 NA intron (NM_018460, intron 6 of 13) intron (NM_018460, intron 6 of 13) 255631 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 365-53 chr10 75552297 75552511 + 2 NA promoter-TSS (NR_030337) promoter-TSS (NR_030337) -54 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 548-177 chr5 9884626 9885021 + 2 NA intron (NR_027112, intron 2 of 12) intron (NR_027112, intron 2 of 12) 19001 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 151-42 chr2 224404468 224404587 + 2 NA Intergenic Intergenic -2420 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 490-315 chr9 93735506 93735915 + 2 NA Intergenic L1PA13|LINE|L1 -83647 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 274-174 chr18 13835730 13835913 + 2 NA Intergenic Intergenic 11672 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 560-58 chr15 72417434 72417870 + 2 NA intron (NR_135678, intron 2 of 3) L1MC4|LINE|L1 19347 NM_001080462 338949 Hs.446069 NM_001080462 ENSG00000187806 TMEM202 - transmembrane protein 202 protein-coding 297-98 chr12 20265921 20266095 + 2 NA Intergenic AluSp|SINE|Alu -103237 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 179-51 chr2 184747728 184747883 + 2 NA intron (NM_194250, intron 1 of 3) L1PA16|LINE|L1 149276 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 545-197 chr5 180698524 180698955 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 14643 NR_146728 105377765 Hs.131536 NR_146728 LINC02222 - long intergenic non-protein coding RNA 2222 ncRNA 340-242 chr2 34562854 34563035 + 2 NA Intergenic Intergenic -114613 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 608-125 chr5 110817581 110818122 + 2 NA Intergenic Intergenic 78844 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 257-110 chr14 62658562 62658781 + 2 NA Intergenic Intergenic 386787 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 452-4 chr1 71989313 71989643 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -152466 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 458-232 chr7 21556514 21556811 + 2 NA intron (NM_001277115, intron 2 of 81) L1PA15|LINE|L1 13623 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 442-284 chr8 55215924 55216298 + 2 NA intron (NM_052898, intron 1 of 2) L1M5|LINE|L1 114083 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 310-500 chr7 158681497 158681801 + 2 NA intron (NM_001281932, intron 10 of 28) L1M4|LINE|L1 23155 NM_017760 54892 Hs.18616 NM_017760 ENSG00000146918 NCAPG2 3KS|CAP-G2|CAPG2|LUZP5|MTB|hCAP-G2 non-SMC condensin II complex subunit G2 protein-coding 270-246 chr3 127061361 127061519 + 2 NA Intergenic L1MC2|LINE|L1 72846 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 340-405 chr4 81983427 81983641 + 2 NA Intergenic Intergenic 390457 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 129-63 chr4 138383604 138383694 + 2 NA intron (NR_051987, intron 2 of 2) intron (NR_051987, intron 2 of 2) 73938 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 299-366 chr5 52440462 52440669 + 2 NA Intergenic Intergenic -347351 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 653-8 chr1 119537168 119537678 + 2 NA Intergenic L1ME2|LINE|L1 -26457 NR_033781 128102 Hs.681806 NR_033781 HSD3BP4 - hydroxy-delta-5-steroid dehydrogenase, 3 beta, pseudogene 4 pseudo 270-369 chr7 110357272 110357462 + 2 NA Intergenic L1MA9|LINE|L1 -397154 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 351-389 chr5 100013928 100014188 + 2 NA Intergenic Intergenic 374196 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 191-6 chr1 81265662 81265788 + 2 NA Intergenic Intergenic -40467 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 293-464 chr8 139187108 139187284 + 2 NA Intergenic L1MCb|LINE|L1 -273155 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 113-3 chr1 162830055 162830140 + 2 NA Intergenic Intergenic 38718 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 532-79 chr15 62294896 62295354 + 2 NA Intergenic Intergenic 9609 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 114-65 chr8 106774993 106775055 + 2 NA Intergenic L1MA10|LINE|L1 -4780 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 320-489 chr6 66469385 66469633 + 2 NA Intergenic Intergenic 681630 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 265-111 chr14 72606729 72606972 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 90030 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 286-84 chr12 15478997 15479221 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -67502 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 304-542 chr9 27122179 27122446 + 2 NA intron (NM_001290078, intron 1 of 20) L2b|LINE|L2 13171 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 744-69 chr7 83482846 83483548 + 2 NA intron (NM_001178129, intron 2 of 16) Charlie4a|DNA|hAT-Charlie 158234 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 266-205 chr2 183209691 183209908 + 2 NA Intergenic Intergenic 85356 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 259-9 chr1 49862903 49863098 + 2 NA intron (NM_001323575, intron 1 of 12) L1MA1|LINE|L1 160954 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 390-379 chr8 86948822 86949143 + 2 NA intron (NM_173538, intron 4 of 10) L1MA2|LINE|L1 82567 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 255-352 chr6 53417885 53418078 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -68802 NM_001242831 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 339-520 chr7 12979121 12979376 + 2 NA Intergenic Intergenic 291615 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 357-445 chr8 90915232 90915585 + 2 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 69669 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 444-63 chr13 92627502 92627912 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 92248 NR_049776 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 393-272 chr5 30313638 30313954 + 2 NA Intergenic L1ME2|LINE|L1 433236 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 160-36 chr2 7593129 7593249 + 2 NA Intergenic Intergenic 171928 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 661-37 chr17 62205683 62206168 + 2 NA Intergenic Intergenic 69730 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 321-182 chr14 79944218 79944386 + 2 NA Intergenic Intergenic -267117 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 251-194 chr2 193954501 193954694 + 2 NA Intergenic Intergenic -389672 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 243-396 chr6 140416376 140416539 + 2 NA Intergenic LOR1b|LTR|ERV1 211205 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 269-7 chr1 46715378 46715581 + 2 NA intron (NM_014774, intron 2 of 10) MIRb|SINE|MIR 3635 NM_014774 9813 Hs.707688 NM_014774 ENSG00000159658 EFCAB14 KIAA0494 EF-hand calcium binding domain 14 protein-coding 181-23 chr10 106115931 106116071 + 2 NA Intergenic L1PA10|LINE|L1 -24164 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 385-379 chr8 75198215 75198444 + 2 NA Intergenic L1MA4A|LINE|L1 80152 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 172-94 chr4 104287048 104287184 + 2 NA Intergenic Intergenic -203849 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 539-47 chr12 17799137 17799605 + 2 NA Intergenic L1PA15|LINE|L1 126072 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 387-277 chr5 46211791 46212030 + 2 NA Intergenic ALR/Alpha|Satellite|centr -515530 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 610-175 chr8 126616571 126617099 + 2 NA Intergenic AluJr|SINE|Alu -58357 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 209-99 chr14 81689119 81689300 + 2 NA Intergenic Intergenic 53929 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 217-156 chr18 1625266 1625418 + 2 NA Intergenic L1M4a1|LINE|L1 -265713 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 339-171 chr15 25735164 25735469 + 2 NA intron (NM_024490, intron 3 of 20) intron (NM_024490, intron 3 of 20) 113509 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 385-363 chr7 95951012 95951270 + 2 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 178635 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 393-281 chr5 101512304 101512520 + 2 NA Intergenic Intergenic -609130 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 462-45 chr11 46769272 46769696 + 2 NA intron (NM_001008938, intron 26 of 43) AluJr|SINE|Alu -6985 NR_003056 692108 Hs.693252 NR_003056 ENSG00000212135 SNORD67 HBII-166 small nucleolar RNA, C/D box 67 snoRNA 255-8 chr1 103498970 103499189 + 2 NA intron (NM_001347929, intron 1 of 5) intron (NM_001347929, intron 1 of 5) 26432 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 227-137 chr17 68868338 68868546 + 2 NA intron (NM_001288985, intron 38 of 39) intron (NM_001288985, intron 38 of 39) 86950 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 367-354 chr5 42291945 42292277 + 2 NA Intergenic MER3|DNA|hAT-Charlie -116766 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 333-495 chr6 24401161 24401455 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 -1600 NM_001286264 57380 Hs.658612 NM_020662 ENSG00000124532 MRS2 HPT|MRS2L magnesium transporter MRS2 protein-coding 289-76 chr11 7462338 7462595 + 2 NA intron (NR_103855, intron 1 of 4) intron (NR_103855, intron 1 of 4) 3369 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 227-189 chr2 169194443 169194603 + 2 NA intron (NM_004525, intron 46 of 78) intron (NM_004525, intron 46 of 78) 113416 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 294-146 chr15 88830523 88830724 + 2 NA intron (NM_001369268, intron 1 of 18) Tigger3c|DNA|TcMar-Tigger 27180 NM_001135 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 383-400 chr8 133410590 133410940 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -113461 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 336-443 chr5 6105125 6105352 + 2 NA Intergenic Intergenic 232054 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 356-521 chrX 121590041 121590242 + 2 NA Intergenic Intergenic 219169 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 249-44 chr10 38155577 38155764 + 2 NA Intergenic L1M5|LINE|L1 -20001 NR_024524 100129055 Hs.148265 NR_024524 LOC100129055 - cyclin Y like 1 pseudogene pseudo 127-27 chr14 38098867 38098959 + 2 NA Intergenic L1MD1|LINE|L1 -108991 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 445-224 chr5 145611523 145611877 + 2 NA Intergenic L1MEg|LINE|L1 223642 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 210-66 chr13 102046963 102047146 + 2 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) -1050 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 526-200 chr5 104238260 104238564 + 2 NA Intergenic L2|LINE|L2 -675623 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 769-14 chr13 88355616 88356283 + 2 NA Intergenic L1MA4|LINE|L1 -184880 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 451-153 chr3 143375239 143375596 + 2 NA intron (NM_173653, intron 13 of 15) MLT1H|LTR|ERVL-MaLR 33171 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 338-196 chr16 62172494 62172692 + 2 NA Intergenic Intergenic -136155 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 257-268 chr3 71910739 71910916 + 2 NA Intergenic MER34A|LTR|ERV1 -125679 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 486-144 chr2 99697640 99698009 + 2 NA intron (NM_001025108, intron 10 of 23) MIRc|SINE|MIR -207807 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 372-190 chr17 65658424 65658675 + 2 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -96901 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 483-250 chr7 64197308 64197617 + 2 NA Intergenic MER41-int|LTR|ERV1 -9741 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 253-260 chr3 71807834 71808006 + 2 NA Intergenic MIR|SINE|MIR -22772 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 532-133 chr2 153381491 153381982 + 2 NA Intergenic Intergenic 97026 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 195-98 chr2 4381353 4381508 + 2 NA Intergenic Intergenic 274792 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 389-33 chr10 60494808 60495095 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 78005 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 194-227 chr9 96794323 96794476 + 2 NA Intergenic L1PREC2|LINE|L1 -16270 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 271-61 chr10 122524743 122524968 + 2 NA Intergenic Intergenic -35810 NM_004406 1755 Hs.279611 NM_004406 ENSG00000187908 DMBT1 GP340|SAG|SALSA|muclin deleted in malignant brain tumors 1 protein-coding 196-159 chr21 30294948 30295135 + 2 NA Intergenic Intergenic -5527 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 202-99 chr18 10214489 10214654 + 2 NA Intergenic Intergenic 199799 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 211-285 chr7 134269994 134270151 + 2 NA Intergenic L1MDa|LINE|L1 46858 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 259-429 chr9 32370789 32370976 + 2 NA Intergenic Intergenic -13721 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 305-194 chr17 34470617 34470793 + 2 NA Intergenic L2b|LINE|L2 -107472 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 327-386 chr5 11857438 11857734 + 2 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 46860 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 213-155 chr2 196544206 196544382 + 2 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 48689 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 339-530 chr7 52309861 52310064 + 2 NA Intergenic MER110-int|LTR|ERV1 -725671 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 222-287 chr5 36280583 36280756 + 2 NA intron (NM_001323279, intron 1 of 12) intron (NM_001323279, intron 1 of 12) 21233 NM_001323279 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 316-375 chr3 188470444 188470722 + 2 NA intron (NM_001167672, intron 2 of 9) intron (NM_001167672, intron 2 of 9) 98083 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 336-108 chr11 92189027 92189211 + 2 NA Intergenic Intergenic -35915 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 251-307 chr5 87975858 87976057 + 2 NA Intergenic L1PA15-16|LINE|L1 292888 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 230-256 chr4 33295364 33295561 + 2 NA Intergenic Intergenic 744431 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 314-45 chr1 226485880 226486173 + 2 NA Intergenic L1MA4|LINE|L1 -62738 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 766-15 chr12 40482256 40482813 + 2 NA exon (NM_173600, exon 56 of 174) exon (NM_173600, exon 56 of 174) 89140 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 241-37 chr10 56827413 56827598 + 2 NA Intergenic L1PB4|LINE|L1 -466232 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 549-224 chr9 122716956 122717361 + 2 NA Intergenic Intergenic -6832 NM_001005235 254973 Hs.626838 NM_001005235 ENSG00000136939 OR1L4 OR1L5|OR9-29|OR9-E|OST046 olfactory receptor family 1 subfamily L member 4 protein-coding 298-73 chr11 63302399 63302661 + 2 NA exon (NM_001039752, exon 7 of 10) exon (NM_001039752, exon 7 of 10) 12627 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 478-29 chr10 81390174 81390542 + 2 NA Intergenic L1M4b|LINE|L1 -484836 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 378-239 chr2 114674181 114674498 + 2 NA intron (NM_001321908, intron 2 of 25) L1ME4a|LINE|L1 159209 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 366-365 chr6 767388 767629 + 2 NA Intergenic Tigger11a|DNA|TcMar-Tigger -74367 NR_073064 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 314-29 chr1 158675622 158675890 + 2 NA intron (NM_003126, intron 8 of 51) MER44B|DNA|TcMar-Tigger 10959 NM_003126 6708 Hs.119825 NM_003126 ENSG00000163554 SPTA1 EL2|HPP|HS3|SPH3|SPTA spectrin alpha, erythrocytic 1 protein-coding 678-100 chr8 57053629 57053993 + 2 NA Intergenic MIRb|SINE|MIR -59944 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 356-25 chr1 186081749 186082022 + 2 NA intron (NM_031935, intron 56 of 106) intron (NM_031935, intron 56 of 106) -214388 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 621-22 chr12 5951687 5952180 + 2 NA intron (NM_000552, intron 49 of 51) intron (NM_000552, intron 49 of 51) -5701 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 336-374 chr3 105132994 105133250 + 2 NA Intergenic Intergenic -233591 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 249-243 chr21 23172395 23172603 + 2 NA Intergenic Intergenic 93215 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 178-76 chr20 55843085 55843226 + 2 NA Intergenic Intergenic 162364 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 517-75 chr14 29147704 29148071 + 2 NA Intergenic Intergenic -362100 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 164-80 chr3 157651933 157652074 + 2 NA Intergenic Intergenic 108659 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 478-83 chr14 71767618 71768035 + 2 NA Intergenic Intergenic -164345 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 230-40 chr10 49341337 49341501 + 2 NA Intergenic L1MEf|LINE|L1 42249 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 249-369 chr6 164805319 164805519 + 2 NA intron (NR_131926, intron 2 of 3) intron (NR_131926, intron 2 of 3) 16644 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 689-95 chr8 43875875 43876401 + 2 NA Intergenic ALR/Alpha|Satellite|centr 583696 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 388-131 chr17 13200961 13201206 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 105677 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 356-148 chr14 63811410 63811618 + 2 NA Intergenic AluJb|SINE|Alu -41451 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 350-213 chr2 42691706 42691969 + 2 NA intron (NM_001330443, intron 9 of 16) L1M1|LINE|L1 72424 NM_148962 165140 Hs.168439 NM_148962 ENSG00000162881 OXER1 GPCR|GPR170|TG1019 oxoeicosanoid receptor 1 protein-coding 251-420 chr9 95474347 95474497 + 2 NA intron (NM_000264, intron 12 of 23) intron (NM_000264, intron 12 of 23) 10813 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 489-149 chr2 179443881 179444259 + 2 NA intron (NR_148056, intron 9 of 9) intron (NR_148056, intron 9 of 9) 118518 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 251-270 chr4 88168378 88168618 + 2 NA intron (NM_001257386, intron 1 of 15) AluSc|SINE|Alu -9175 NM_001348989 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 357-360 chr5 130238772 130238983 + 2 NA Intergenic Intergenic 334412 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 383-69 chr11 114979235 114979604 + 2 NA Intergenic MIR|SINE|MIR 300892 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 347-269 chr20 43272230 43272504 + 2 NA Intergenic Intergenic -82461 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 236-62 chr11 14574495 14574676 + 2 NA intron (NM_148976, intron 2 of 10) THE1C|LTR|ERVL-MaLR -54140 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 307-154 chr15 34846114 34846268 + 2 NA Intergenic AluJb|SINE|Alu -50642 NM_005159 70 Hs.118127 NM_005159 ENSG00000159251 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin alpha cardiac muscle 1 protein-coding 236-170 chr2 74356042 74356234 + 2 NA Intergenic Intergenic -12722 NM_133478 57835 Hs.594099 NM_021196 ENSG00000188687 SLC4A5 NBC4|NBCe2 solute carrier family 4 member 5 protein-coding 295-356 chr4 104944838 104945086 + 2 NA Intergenic LTR79|LTR|ERVL -200913 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 356-163 chr15 52929462 52929709 + 2 NA Intergenic L1MA9|LINE|L1 -139249 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 494-175 chr3 70818465 70818848 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 246268 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 291-147 chr15 48197623 48197854 + 2 NA intron (NM_001370416, intron 1 of 1) intron (NM_001370416, intron 1 of 1) 5700 NM_001370416 399697 Hs.721408 NM_001145668 ENSG00000233932 CTXN2 - cortexin 2 protein-coding 348-329 chr3 164643824 164644068 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 187534 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 328-590 chr8 138270543 138270716 + 2 NA intron (NM_015912, intron 3 of 19) MSTD|LTR|ERVL-MaLR -187084 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 297-172 chr17 52586908 52587120 + 2 NA Intergenic L1MB7|LINE|L1 196492 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 135-55 chr5 44933445 44933544 + 2 NA Intergenic L1MA6|LINE|L1 124547 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 315-202 chr18 64930781 64930981 + 2 NA Intergenic Intergenic -670826 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 315-4 chr1 19548486 19548664 + 2 NA Intergenic AluJb|SINE|Alu 48257 NR_135054 105378614 Hs.430098 NR_135054 ENSG00000235185 LOC105378614 - uncharacterized LOC105378614 ncRNA 349-170 chr14 86823427 86823747 + 2 NA Intergenic Intergenic -82191 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 332-330 chr3 88812160 88812388 + 2 NA Intergenic Intergenic -295347 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 192-52 chr12 86811723 86811870 + 2 NA intron (NM_001351286, intron 1 of 7) L1MDb|LINE|L1 27204 NM_001351285 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 247-158 chr17 63034664 63034887 + 2 NA intron (NM_025185, intron 2 of 25) Tigger1|DNA|TcMar-Tigger 68540 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 374-365 chr7 98693619 98693882 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 76465 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 392-108 chr16 80437198 80437584 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -103343 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 980-16 chr7 45362100 45362819 + 2 NA Intergenic L3|LINE|CR1 204668 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 606-67 chr18 27261306 27261689 + 2 NA Intergenic L1MB7|LINE|L1 -76189 NM_031422 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 190-96 chr2 150952459 150952626 + 2 NA Intergenic L1ME3G|LINE|L1 309321 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 391-107 chr14 65898591 65898969 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 427678 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 379-350 chr8 112446063 112446281 + 2 NA intron (NM_052900, intron 31 of 68) MIR|SINE|MIR -197321 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 266-449 chr9 79764497 79764698 + 2 NA Intergenic Intergenic -59933 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 441-257 chr8 53774711 53775074 + 2 NA intron (NM_213620, intron 9 of 13) L1MEf|LINE|L1 68150 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 247-430 chr9 73958846 73959063 + 2 NA Intergenic MER102a|DNA|hAT-Charlie -412577 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 464-215 chr6 64036307 64036697 + 2 NA intron (NM_001292009, intron 33 of 43) intron (NM_001292009, intron 33 of 43) 229666 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 363-74 chr11 13188234 13188554 + 2 NA Intergenic L1MEg|LINE|L1 -88258 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 276-348 chr4 97599787 97600016 + 2 NA intron (NM_174952, intron 10 of 10) L1PA15|LINE|L1 232975 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 202-224 chr6 47768925 47769089 + 2 NA Intergenic Intergenic -13032 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 150-92 chr5 158525272 158525413 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -115569 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 227-268 chr4 148468537 148468737 + 2 NA Intergenic LTR16A|LTR|ERVL -23939 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 358-367 chr5 46050682 46050971 + 2 NA Intergenic ALR/Alpha|Satellite|centr -354446 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 247-401 chr8 67520566 67520699 + 2 NA intron (NM_020361, intron 2 of 10) MIRb|SINE|MIR 176798 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 225-239 chr4 41791041 41791241 + 2 NA Intergenic Intergenic -42171 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 222-46 chr10 91933708 91933895 + 2 NA intron (NM_003972, intron 1 of 37) intron (NM_003972, intron 1 of 37) 10031 NM_003972 9044 Hs.500526 NM_003972 ENSG00000095564 BTAF1 MOT1|TAF(II)170|TAF172|TAFII170 B-TFIID TATA-box binding protein associated factor 1 protein-coding 311-7 chr1 54309403 54309569 + 2 NA intron (NM_001009955, intron 4 of 16) intron (NM_001009955, intron 4 of 16) 73043 NR_103541 619518 Hs.591438 NM_001034847 ENSG00000198711 SSBP3-AS1 C1orf191|MST128|MSTP128 SSBP3 antisense RNA 1 ncRNA 231-31 chr10 32186034 32186205 + 2 NA Intergenic Intergenic -129694 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 761-36 chr21 32116716 32117225 + 2 NA Intergenic LTR16E1|LTR|ERVL -30675 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 311-40 chr10 8156909 8157203 + 2 NA Intergenic Intergenic 102368 NM_001002295 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 354-314 chr3 192984666 192984856 + 2 NA Intergenic Intergenic -66905 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 330-222 chr18 13784714 13784942 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -39321 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 172-76 chr3 37314290 37314449 + 2 NA intron (NM_001172713, intron 11 of 22) AluSz|SINE|Alu -70174 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 526-54 chr12 10741898 10742261 + 2 NA Intergenic Intergenic -8155 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 124-51 chr4 34414759 34414839 + 2 NA Intergenic Intergenic -145052 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 250-97 chr12 103145955 103146133 + 2 NA Intergenic L1ME4a|LINE|L1 -5798 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 527-107 chr17 19508359 19508802 + 2 NA Intergenic Intergenic -25274 NM_018242 55244 Hs.232054 NM_018242 ENSG00000142494 SLC47A1 MATE1 solute carrier family 47 member 1 protein-coding 256-394 chr7 87658780 87659022 + 2 NA intron (NM_001134406, intron 2 of 9) L1MDa|LINE|L1 30503 NM_138290 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 512-105 chr18 25601172 25601670 + 2 NA Intergenic L2b|LINE|L2 -249255 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 312-430 chr5 117814194 117814370 + 2 NA intron (NR_104997, intron 1 of 2) MLT1E2|LTR|ERVL-MaLR 83921 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 581-105 chr3 156984354 156984745 + 2 NA intron (NM_001004316, intron 7 of 12) AluSx1|SINE|Alu -97292 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 351-244 chr2 167037909 167038148 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 102927 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 248-92 chr12 111516749 111516978 + 2 NA intron (NR_132311, intron 9 of 23) intron (NR_132311, intron 9 of 23) 82001 NM_001291424 10019 Hs.506784 NM_005475 ENSG00000111252 SH2B3 IDDM20|LNK SH2B adaptor protein 3 protein-coding 296-12 chr1 112034614 112034834 + 2 NA Intergenic Intergenic 44188 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 502-262 chr8 79882893 79883298 + 2 NA Intergenic Intergenic -11358 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 397-105 chr15 71821210 71821511 + 2 NA TTS (NM_006901) TTS (NM_006901) 10806 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 464-148 chr20 45466677 45467019 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -2905 NM_006103 10406 Hs.2719 NM_006103 ENSG00000101443 WFDC2 EDDM4|HE4|WAP5|dJ461P17.6 WAP four-disulfide core domain 2 protein-coding 596-50 chr12 92209527 92209904 + 2 NA Intergenic Intergenic 63630 NR_135037 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 368-84 chr11 82981706 82982020 + 2 NA 3' UTR (NM_001286060, exon 5 of 5) 3' UTR (NM_001286060, exon 5 of 5) 52411 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 270-364 chr7 86598468 86598671 + 2 NA Intergenic L1PA13|LINE|L1 -45340 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 307-136 chr14 48295885 48296040 + 2 NA Intergenic Intergenic -500948 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 495-14 chr1 202780947 202781330 + 2 NA intron (NM_001314042, intron 1 of 27) AluJr4|SINE|Alu 28332 NM_006618 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 240-330 chr4 110931283 110931433 + 2 NA Intergenic Intergenic -70711 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 263-333 chr5 114869334 114869575 + 2 NA Intergenic L1PA11|LINE|L1 -96041 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 480-269 chr7 12831218 12831512 + 2 NA Intergenic Intergenic 143732 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 211-58 chr11 125130650 125130800 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -18962 NR_047587 219854 Hs.7626 NM_001080546 ENSG00000150433 TMEM218 - transmembrane protein 218 protein-coding 305-301 chr20 5140583 5140825 + 2 NA intron (NM_003818, intron 1 of 12) L1MC5|LINE|L1 13696 NM_003818 8760 Hs.126857 NM_003818 ENSG00000101290 CDS2 - CDP-diacylglycerol synthase 2 protein-coding 162-95 chr4 66676881 66676995 + 2 NA Intergenic L1M5|LINE|L1 400114 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 188-150 chr4 42842176 42842308 + 2 NA Intergenic Intergenic -51024 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 631-88 chr3 154830080 154830484 + 2 NA Intergenic Intergenic -193842 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 272-271 chr3 78976654 78976816 + 2 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) 42724 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 404-226 chr4 30677085 30677357 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -43148 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 332-4 chr1 36944160 36944459 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 90206 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 152-28 chr15 57851279 57851363 + 2 NA Intergenic Intergenic 144607 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 324-153 chr14 39857855 39858036 + 2 NA Intergenic Intergenic -425445 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 581-13 chr10 37826227 37826528 + 2 NA intron (NR_148007, intron 6 of 9) intron (NR_148007, intron 6 of 9) -31202 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 401-222 chr4 23508852 23509213 + 2 NA Intergenic tRNA-Glu-GAG_|tRNA|tRNA 372260 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 242-280 chr4 125883461 125883640 + 2 NA Intergenic Intergenic 376291 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 486-220 chr4 37192376 37192707 + 2 NA Intergenic MamRep38|DNA|hAT 49450 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 240-76 chr11 39622885 39623042 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 670167 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 258-77 chr11 116157890 116158060 + 2 NA Intergenic L1ME1|LINE|L1 -397775 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 399-279 chr7 43025308 43025697 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -87145 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 313-459 chr6 6488175 6488463 + 2 NA intron (NR_026970, intron 3 of 7) intron (NR_026970, intron 3 of 7) -100401 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 339-104 chr11 79570414 79570712 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -129533 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 188-23 chr11 29962437 29962597 + 2 NA Intergenic Intergenic 19876 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 518-127 chr2 46279187 46279553 + 2 NA Intergenic MIRb|SINE|MIR -18037 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 312-569 chrX 136116685 136116989 + 2 NA Intergenic Intergenic -29865 NR_027621 2273 Hs.435369 NM_001449 ENSG00000022267 FHL1 FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA four and a half LIM domains 1 protein-coding 299-195 chr2 28433220 28433472 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -38674 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 231-364 chr8 131171291 131171473 + 2 NA Intergenic L1MA8|LINE|L1 -130473 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 250-389 chr7 9111858 9112030 + 2 NA Intergenic L1M1|LINE|L1 -522326 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 227-161 chr2 47916262 47916456 + 2 NA Intergenic Intergenic -10566 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 262-176 chr18 3967020 3967156 + 2 NA intron (NR_102696, intron 1 of 4) L2a|LINE|L2 4735 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 280-99 chr12 97454443 97454690 + 2 NA Intergenic Intergenic -8210 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 384-114 chr14 82080336 82080584 + 2 NA Intergenic Intergenic -337322 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 741-59 chr6 44985230 44985719 + 2 NA intron (NM_181356, intron 8 of 12) Tigger16a|DNA|TcMar-Tigger 212296 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 227-97 chr13 62418621 62418818 + 2 NA Intergenic Intergenic 95062 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 286-142 chr15 101335492 101335762 + 2 NA intron (NR_132373, intron 1 of 2) L1ME4b|LINE|L1 1190 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 528-40 chr10 94730653 94730962 + 2 NA intron (NM_000772, intron 7 of 8) L1PA16|LINE|L1 -31874 NM_000769 1557 Hs.282409 NM_000769 ENSG00000165841 CYP2C19 CPCJ|CYP2C|CYPIIC17|CYPIIC19|P450C2C|P450IIC19 cytochrome P450 family 2 subfamily C member 19 protein-coding 218-322 chr8 75008291 75008481 + 2 NA intron (NM_001286778, intron 1 of 13) intron (NM_001286778, intron 1 of 13) 8231 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 513-91 chr15 99593446 99593829 + 2 NA intron (NM_001352616, intron 1 of 10) intron (NM_001352616, intron 1 of 10) 27154 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 346-227 chr2 13130388 13130571 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -123466 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 275-133 chr16 65687845 65688103 + 2 NA Intergenic Intergenic -111674 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 549-17 chr1 229686037 229686416 + 2 NA Intergenic L1M4|LINE|L1 59979 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 137-92 chr8 100818953 100819041 + 2 NA Intergenic Intergenic -96909 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 451-144 chr3 54911564 54911840 + 2 NA intron (NM_018398, intron 27 of 37) L2a|LINE|L2 -10447 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 311-496 chr8 53553106 53553299 + 2 NA Intergenic Intergenic -29237 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 188-148 chr4 33595202 33595327 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 444629 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 230-161 chr2 13718029 13718183 + 2 NA Intergenic Intergenic 682852 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 530-221 chr6 148049113 148049613 + 2 NA Intergenic Intergenic -222965 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 434-297 chr8 130454980 130455388 + 2 NA Intergenic Intergenic -11510 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 357-414 chr7 42804897 42805223 + 2 NA Intergenic L1M3b|LINE|L1 -98613 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 215-352 chrX 127766223 127766376 + 2 NA Intergenic L1MA8|LINE|L1 286104 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 332-90 chr11 54668761 54668946 + 2 NA Intergenic Intergenic -37979 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 380-207 chr2 223951931 223952184 + 2 NA Intergenic LTR33A|LTR|ERVL -5406 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 215-165 chr2 220595841 220596036 + 2 NA Intergenic L1MD|LINE|L1 -689373 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 333-16 chr1 67074525 67074801 + 2 NA Intergenic L1MC|LINE|L1 -20515 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 458-81 chr14 87521028 87521376 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 134092 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 218-201 chr21 44830126 44830311 + 2 NA Intergenic MER51A|LTR|ERV1 -12089 NM_001286416 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 535-221 chr7 3782743 3783122 + 2 NA intron (NM_152744, intron 4 of 44) L1MA7|LINE|L1 -346753 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 433-27 chr10 72723229 72723538 + 2 NA intron (NR_073062, intron 3 of 9) L1ME4a|LINE|L1 2354 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 329-166 chr14 71216952 71217116 + 2 NA Intergenic Intergenic -103442 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 623-127 chr8 65776178 65776545 + 2 NA intron (NM_001242318, intron 3 of 12) L1MEg|LINE|L1 12696 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 228-116 chr15 98129112 98129312 + 2 NA Intergenic MLT2D|LTR|ERVL -40459 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 390-405 chr8 139424317 139424572 + 2 NA Intergenic L1MB7|LINE|L1 278679 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 203-180 chr5 58351919 58352039 + 2 NA Intergenic Intergenic 108107 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 343-374 chr4 16328847 16329062 + 2 NA Intergenic L2c|LINE|L2 102291 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 574-125 chr4 57865167 57865536 + 2 NA Intergenic Intergenic 439479 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 316-368 chr3 157807936 157808203 + 2 NA Intergenic Intergenic 264725 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 633-7 chr1 216458478 216458990 + 2 NA Intergenic Intergenic -35286 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 349-505 chr8 90262084 90262367 + 2 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 40737 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 180-91 chr2 221359643 221359742 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 212612 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 246-88 chr12 23092937 23093175 + 2 NA Intergenic L1ME1|LINE|L1 -82580 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 182-96 chr2 144948940 144949065 + 2 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 281035 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 859-16 chr16 83152076 83152693 + 2 NA intron (NM_001220490, intron 3 of 12) L1ME4a|LINE|L1 -162086 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 361-85 chr11 103382046 103382368 + 2 NA intron (NM_001377, intron 83 of 88) intron (NM_001377, intron 83 of 88) 272781 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 376-12 chr1 101852869 101853157 + 2 NA intron (NM_058170, intron 1 of 5) L2a|LINE|L2 -5933 NM_001288821 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 269-3 chr1 17759902 17760077 + 2 NA intron (NM_030812, intron 1 of 2) LTR41|LTR|ERVL 4656 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 272-103 chr13 71080598 71080811 + 2 NA intron (NR_047699, intron 1 of 3) intron (NR_047699, intron 1 of 3) 65563 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 411-306 chr9 27068106 27068468 + 2 NA Intergenic Intergenic -40854 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 227-302 chr5 179464074 179464224 + 2 NA Intergenic L1MB8|LINE|L1 52562 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 218-53 chr11 75129848 75130046 + 2 NA Intergenic Intergenic -21160 NM_007256 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 255-83 chr12 118831042 118831231 + 2 NA intron (NR_134997, intron 2 of 2) L1MB3|LINE|L1 2400 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 194-220 chr8 140053530 140053656 + 2 NA intron (NM_001160372, intron 17 of 22) L1M3|LINE|L1 46942 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 231-182 chr2 153831166 153831353 + 2 NA Intergenic Intergenic -40663 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 333-295 chr20 7707671 7707948 + 2 NA Intergenic Intergenic 232649 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 612-144 chr8 119462127 119462607 + 2 NA Intergenic Intergenic 45921 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 594-91 chr3 84448740 84449171 + 2 NA Intergenic Intergenic 420620 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 613-45 chr18 2482968 2483468 + 2 NA Intergenic Intergenic 88287 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 357-39 chr10 82213436 82213690 + 2 NA intron (NM_001165973, intron 2 of 10) Tigger4b|DNA|TcMar-Tigger 19357 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 336-335 chr21 19761289 19761536 + 2 NA Intergenic Intergenic 138343 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 656-23 chr10 66000687 66001120 + 2 NA intron (NM_001127384, intron 15 of 17) MIR|SINE|MIR 429478 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 230-138 chr16 60719455 60719655 + 2 NA Intergenic L1MEc|LINE|L1 336211 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 353-531 chr8 92609048 92609348 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 46296 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 246-27 chr1 227658197 227658367 + 2 NA 3' UTR (NM_001367910, exon 5 of 5) 3' UTR (NM_001367910, exon 5 of 5) 39425 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 514-130 chr18 70483352 70483768 + 2 NA Intergenic L1PREC2|LINE|L1 -98969 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 355-165 chr15 24729935 24730257 + 2 NA Intergenic Intergenic 54702 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 188-50 chr14 32700114 32700297 + 2 NA intron (NM_004274, intron 9 of 13) intron (NM_004274, intron 9 of 13) -238674 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 284-415 chr8 114684402 114684625 + 2 NA Intergenic Intergenic 983500 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 457-222 chr6 149702258 149702682 + 2 NA intron (NM_001350340, intron 1 of 8) MIRc|SINE|MIR 13955 NR_073033 9113 Hs.549084 NM_004690 ENSG00000131023 LATS1 WARTS|wts large tumor suppressor kinase 1 protein-coding 327-517 chr9 27743198 27743432 + 2 NA Intergenic Intergenic -169449 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 327-175 chr15 77720356 77720628 + 2 NA intron (NM_001301192, intron 2 of 4) intron (NM_001301192, intron 2 of 4) 259 NM_001301197 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 526-219 chr6 138055108 138055411 + 2 NA Intergenic L1PB1|LINE|L1 52160 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 194-202 chr8 9208341 9208495 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 19419 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 665-113 chr9 32122461 32123058 + 2 NA Intergenic L1ME3A|LINE|L1 -261844 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 291-19 chr1 118637669 118637847 + 2 NA Intergenic L1PA4|LINE|L1 350585 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 315-203 chr18 77524375 77524672 + 2 NA Intergenic L1MB1|LINE|L1 274675 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 374-267 chr3 175856894 175857145 + 2 NA Intergenic Intergenic -80686 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 293-368 chr6 61745211 61745404 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 171177 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 402-127 chr18 70964945 70965244 + 2 NA Intergenic Intergenic -314140 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 566-48 chr14 53181857 53182266 + 2 NA Intergenic Intergenic 28707 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 363-152 chr15 37464676 37464949 + 2 NA Intergenic L1MEc|LINE|L1 -363501 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 530-58 chr12 65281045 65281559 + 2 NA intron (NM_001193461, intron 1 of 6) intron (NM_001193461, intron 1 of 6) 2315 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 392-138 chr2 18597276 18597486 + 2 NA Intergenic Intergenic -7801 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 498-201 chr4 161533107 161533543 + 2 NA intron (NM_020116, intron 10 of 15) L1PA16|LINE|L1 -489408 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 358-299 chr3 98227528 98227783 + 2 NA Intergenic Intergenic -36589 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 547-70 chr14 66435499 66435911 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -50666 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 264-3 chr1 34962232 34962464 + 2 NA Intergenic L1MEg|LINE|L1 16358 NR_037869 653160 Hs.533986 NR_037869 ENSG00000241014 LOC653160 - uncharacterized LOC653160 ncRNA 363-482 chrX 30956013 30956304 + 2 NA Intergenic MIR|SINE|MIR -66904 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 protein-coding 358-348 chr4 126237668 126237874 + 2 NA Intergenic Intergenic 730512 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 272-125 chr14 86915796 86916001 + 2 NA intron (NR_038445, intron 3 of 4) intron (NR_038445, intron 3 of 4) 10120 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 240-317 chr4 58729603 58729783 + 2 NA Intergenic Intergenic -193365 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 324-301 chr2 228072777 228072943 + 2 NA intron (NM_030623, intron 3 of 10) MLT1G|LTR|ERVL-MaLR 108785 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 206-222 chr5 151564610 151564814 + 2 NA intron (NM_001447, intron 1 of 22) L1ME4b|LINE|L1 4232 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 267-223 chr2 226199365 226199577 + 2 NA Intergenic L2|LINE|L2 56677 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 347-365 chr4 179807815 179808088 + 2 NA Intergenic L1MA6|LINE|L1 1351198 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 439-174 chr3 5688804 5689070 + 2 NA Intergenic MIRb|SINE|MIR -438682 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 512-156 chr22 26325048 26325481 + 2 NA intron (NM_001184776, intron 9 of 14) MLT1H|LTR|ERVL-MaLR -103996 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 193-72 chr16 25241432 25241581 + 2 NA intron (NM_001012981, intron 6 of 6) L1MC5|LINE|L1 16339 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 124-22 chr13 59153769 59153871 + 2 NA Intergenic Intergenic -858898 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 310-95 chr12 4870223 4870517 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger -39535 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 229-165 chr19 28797611 28797803 + 2 NA Intergenic L1PA17|LINE|L1 -70013 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 365-302 chr4 116474274 116474619 + 2 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat 174721 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 574-180 chr8 83453723 83454243 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger 50225 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 281-451 chr8 131944638 131944870 + 2 NA non-coding (NR_136615, exon 3 of 24) non-coding (NR_136615, exon 3 of 24) 27981 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 431-281 chr7 137041653 137042056 + 2 NA intron (NR_046103, intron 1 of 3) intron (NR_046103, intron 1 of 3) 122487 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 453-55 chr12 71096032 71096318 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger 61634 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 321-609 chrX 30245370 30245568 + 2 NA intron (NM_002363, intron 1 of 3) MIRb|SINE|MIR -1677 NM_177404 4112 Hs.73021 NM_002363 ENSG00000214107 MAGEB1 CT3.1|DAM10|MAGE-Xp|MAGEL1 MAGE family member B1 protein-coding 374-255 chr3 109782812 109783098 + 2 NA Intergenic Intergenic 180127 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 371-295 chr4 180879951 180880256 + 2 NA Intergenic Intergenic 279046 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 514-174 chr21 22297589 22297969 + 2 NA Intergenic Intergenic 199162 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 172-129 chr8 27454005 27454126 + 2 NA intron (NM_173175, intron 27 of 29) intron (NM_173175, intron 27 of 29) 20695 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 389-126 chr16 82292274 82292563 + 2 NA Intergenic MER68|LTR|ERVL -122194 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 287-436 chr9 38626179 38626458 + 2 NA Intergenic L1MCa|LINE|L1 5230 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 276-278 chr3 5350669 5350845 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -100502 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 208-285 chr9 82273509 82273675 + 2 NA Intergenic Intergenic 284820 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 475-259 chr7 33791226 33791569 + 2 NA Intergenic Intergenic -113518 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 337-277 chr2 145958986 145959241 + 2 NA Intergenic L1M3c|LINE|L1 -627944 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 255-351 chr6 48914707 48914893 + 2 NA Intergenic Intergenic 548453 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 502-139 chr2 67081189 67081609 + 2 NA Intergenic Intergenic -5047 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 400-51 chr11 43242075 43242411 + 2 NA Intergenic Intergenic 27126 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 239-321 chr5 92514597 92514739 + 2 NA Intergenic L1MB8|LINE|L1 1056675 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 289-130 chr13 99066678 99066911 + 2 NA intron (NM_015296, intron 1 of 55) intron (NM_015296, intron 1 of 55) 19900 NM_001318849 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 480-310 chr9 26088450 26088860 + 2 NA intron (NM_001004352, intron 1 of 6) intron (NM_001004352, intron 1 of 6) 21980 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 273-49 chr10 51625041 51625212 + 2 NA intron (NM_001098512, intron 3 of 17) L1MA6|LINE|L1 74469 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 342-143 chr14 57265719 57265975 + 2 NA intron (NM_006544, intron 1 of 17) intron (NM_006544, intron 1 of 17) 3058 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 413-40 chr10 66653601 66653866 + 2 NA intron (NM_001127384, intron 9 of 17) L1MA8|LINE|L1 -272303 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 644-34 chr18 59373475 59374040 + 2 NA Intergenic L2c|LINE|L2 -14492 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 405-358 chrX 86865392 86865754 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 602605 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 532-248 chr7 54216088 54216463 + 2 NA Intergenic L1M1|LINE|L1 -114422 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 643-110 chr6 146190959 146191440 + 2 NA intron (NM_001278065, intron 3 of 9) L2b|LINE|L2 162001 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 300-417 chr7 20574076 20574320 + 2 NA Intergenic Intergenic -41469 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 378-138 chr14 61759029 61759374 + 2 NA Intergenic Intergenic -3219 NM_003082 6617 Hs.179312 NM_003082 ENSG00000023608 SNAPC1 PTFgamma|SNAP43 small nuclear RNA activating complex polypeptide 1 protein-coding 208-178 chr4 29141969 29142130 + 2 NA Intergenic Intergenic -72243 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 243-457 chr8 118611974 118612203 + 2 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -8913 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 371-337 chr6 67961610 67961840 + 2 NA Intergenic Intergenic -93626 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 195-36 chr11 60817643 60817788 + 2 NA Intergenic Intergenic -24398 NM_024098 79080 Hs.4253 NM_024098 ENSG00000110104 CCDC86 - coiled-coil domain containing 86 protein-coding 246-166 chr18 11337846 11338030 + 2 NA Intergenic Intergenic -116540 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 247-118 chr14 75088592 75088779 + 2 NA intron (NM_033116, intron 19 of 21) intron (NM_033116, intron 19 of 21) 19044 NM_001330191 79696 Hs.48642 NM_024643 ENSG00000119703 ZC2HC1C C14orf140|FAM164C zinc finger C2HC-type containing 1C protein-coding 385-332 chr6 94821550 94821829 + 2 NA Intergenic Intergenic 755762 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 323-211 chr19 5406571 5406842 + 2 NA Intergenic AluJb|SINE|Alu -48711 NM_181710 148066 Hs.126496 NM_181710 ENSG00000105428 ZNRF4 RNF204|SPERIZIN|Ssrzf1|spzn zinc and ring finger 4 protein-coding 461-202 chr4 116211938 116212359 + 2 NA Intergenic Intergenic -87577 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 351-21 chr1 209337653 209337929 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 12335 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 352-482 chr7 13730932 13731261 + 2 NA Intergenic MIRb|SINE|MIR 255418 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 480-70 chr14 48309032 48309508 + 2 NA Intergenic Intergenic -514256 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 194-159 chr5 13206196 13206384 + 2 NA Intergenic Intergenic -173404 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 289-479 chr8 134900100 134900281 + 2 NA Intergenic Intergenic 50255 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 532-245 chr7 46461330 46461762 + 2 NA Intergenic MER61E|LTR|ERV1 235576 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 222-367 chr8 87813548 87813763 + 2 NA Intergenic Intergenic 60360 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 242-55 chr11 37214059 37214232 + 2 NA Intergenic L1M1|LINE|L1 -615866 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 639-48 chr16 72712238 72712595 + 2 NA Intergenic L1M4c|LINE|L1 -47446 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 293-440 chr8 92610147 92610334 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 45254 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 256-73 chr11 99983182 99983381 + 2 NA intron (NM_001243270, intron 7 of 23) L2c|LINE|L2 427136 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 280-374 chr7 15338642 15338790 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 223299 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 339-476 chr5 158859924 158860108 + 2 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 237940 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 225-147 chr2 36082991 36083198 + 2 NA Intergenic Intergenic 272476 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 448-41 chr10 105493555 105493828 + 2 NA Intergenic Intergenic 326642 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 223-274 chr5 39918019 39918196 + 2 NA Intergenic Intergenic -134184 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 393-58 chr11 100102475 100102819 + 2 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) 546502 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 251-114 chr15 80432851 80432992 + 2 NA intron (NM_014862, intron 1 of 18) intron (NM_014862, intron 1 of 18) 28539 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 514-115 chr16 76563191 76563607 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -71599 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 222-376 chr8 125766883 125767091 + 2 NA Intergenic Intergenic 184210 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 223-2 chr1 59351865 59352028 + 2 NA intron (NM_001350794, intron 4 of 14) intron (NM_001350794, intron 4 of 14) 41914 NM_001350790 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 251-88 chr14 35604252 35604406 + 2 NA intron (NM_014990, intron 35 of 40) L1M5|LINE|L1 70165 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 284-60 chr10 130919287 130919560 + 2 NA Intergenic L1MC2|LINE|L1 43245 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 228-10 chr1 92021566 92021751 + 2 NA Intergenic MER58D|DNA|hAT-Charlie -8327 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 214-157 chr2 45475504 45475664 + 2 NA intron (NM_018079, intron 16 of 20) intron (NM_018079, intron 16 of 20) 135683 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 498-156 chr21 36802006 36802360 + 2 NA intron (NM_001352515, intron 6 of 10) intron (NM_001352515, intron 6 of 10) 103068 NM_009586 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 SIM bHLH transcription factor 2 protein-coding 467-21 chr1 246978060 246978492 + 2 NA intron (NM_001204221, intron 4 of 5) intron (NM_001204221, intron 4 of 5) 29781 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 318-79 chr10 83935965 83936258 + 2 NA Intergenic Intergenic -203398 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 494-313 chr9 84223188 84223671 + 2 NA Intergenic Intergenic 117329 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 293-217 chr2 191429863 191430048 + 2 NA Intergenic Intergenic 184551 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 288-86 chr12 93557830 93558000 + 2 NA Intergenic L1ME1|LINE|L1 -12054 NM_003877 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 226-155 chr2 22496771 22496929 + 2 NA Intergenic Intergenic -39629 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 329-206 chr16 79147457 79147725 + 2 NA intron (NM_001291997, intron 7 of 7) L1MD2|LINE|L1 453146 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 423-320 chrX 42900260 42900505 + 2 NA Intergenic Intergenic -122219 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 226-332 chr7 159328293 159328513 + 2 NA Intergenic L1M4b|LINE|L1 -183446 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 157-53 chr19 36221166 36221274 + 2 NA intron (NM_007145, intron 2 of 3) L1MC5a|LINE|L1 -6136 NM_001042474 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 349-334 chr3 98228288 98228550 + 2 NA Intergenic Intergenic -35825 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 272-304 chr4 60979404 60979597 + 2 NA Intergenic Intergenic 56881 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 178-85 chr3 16051824 16051995 + 2 NA Intergenic Intergenic -122771 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 569-114 chr3 9140826 9141387 + 2 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) -51387 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 127-8 chr1 217286663 217286768 + 2 NA Intergenic L1MA5|LINE|L1 -149013 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 239-417 chr8 122596307 122596503 + 2 NA Intergenic L2c|LINE|L2 -27761 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 377-413 chr8 128189447 128189653 + 2 NA Intergenic Intergenic 39434 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 348-285 chr3 8163118 8163424 + 2 NA Intergenic Intergenic -146964 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 413-128 chr19 36956125 36956434 + 2 NA intron (NM_001204839, intron 5 of 8) LTR16|LTR|ERVL 39947 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 361-232 chr2 128807599 128807924 + 2 NA Intergenic L1MD2|LINE|L1 -56839 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 192-230 chrX 86255950 86256134 + 2 NA intron (NM_001139514, intron 1 of 11) intron (NM_001139514, intron 1 of 11) -6926 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 586-159 chr8 125848235 125848762 + 2 NA Intergenic L2a|LINE|L2 102699 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 382-357 chr6 81367203 81367410 + 2 NA Intergenic Intergenic 385375 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 359-128 chr13 28584806 28584986 + 2 NA Intergenic Intergenic -74234 NM_015932 51371 Hs.268742 NM_015932 ENSG00000132963 POMP C13orf12|HSPC014|PNAS-110|PRAAS2|UMP1 proteasome maturation protein protein-coding 304-535 chr8 124615280 124615509 + 2 NA intron (NM_001282971, intron 3 of 14) L1MB2|LINE|L1 76271 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 466-52 chr11 97575156 97575499 + 2 NA Intergenic AluJo|SINE|Alu 1066902 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 532-208 chr5 118448015 118448422 + 2 NA intron (NR_104610, intron 9 of 9) intron (NR_104610, intron 9 of 9) 113899 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 270-256 chr4 32482601 32482806 + 2 NA Intergenic Intergenic 131665 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 553-161 chr3 182193403 182193888 + 2 NA Intergenic Intergenic 241281 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 429-275 chr7 62905429 62905755 + 2 NA Intergenic ALR/Alpha|Satellite|centr 398464 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 449-250 chr7 10038621 10038926 + 2 NA Intergenic Intergenic 404503 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 242-43 chr10 79357778 79357983 + 2 NA Intergenic Intergenic 10411 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 590-43 chr14 28431076 28431454 + 2 NA Intergenic L1ME1|LINE|L1 334054 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 189-12 chr10 8626033 8626217 + 2 NA Intergenic Intergenic -31734 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 163-64 chr2 114906857 114907002 + 2 NA intron (NM_001321910, intron 2 of 26) L1M4b|LINE|L1 -73381 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 242-57 chr11 54935926 54936159 + 2 NA Intergenic ALR/Alpha|Satellite|centr 229210 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 587-149 chr7 30668702 30669216 + 2 NA intron (NM_001202481, intron 4 of 13) intron (NM_001202481, intron 4 of 13) 13497 NM_001883 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 209-289 chr7 4651945 4652090 + 2 NA Intergenic AluSz|SINE|Alu -30278 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 260-261 chr3 34028543 34028717 + 2 NA Intergenic L2b|LINE|L2 230000 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 282-79 chr11 113472618 113472769 + 2 NA intron (NM_016574, intron 1 of 6) intron (NM_016574, intron 1 of 6) 2586 NM_016574 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 246-51 chr10 63534237 63534379 + 2 NA intron (NM_001001330, intron 1 of 7) AluJr4|SINE|Alu -12418 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 418-158 chr3 70412010 70412406 + 2 NA Intergenic Intergenic -99570 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 440-250 chr8 111845532 111845933 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 469093 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 302-108 chr12 90182955 90183233 + 2 NA Intergenic HAL1|LINE|L1 -110224 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 192-62 chr14 50580910 50581026 + 2 NA intron (NM_015915, intron 1 of 13) L1M5|LINE|L1 20943 NM_015915 51062 Hs.584905 NM_015915 ENSG00000198513 ATL1 AD-FSP|FSP1|GBP3|HSN1D|SPG3|SPG3A|atlastin1 atlastin GTPase 1 protein-coding 307-394 chr5 127079683 127079921 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -6310 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 335-309 chr21 18617342 18617612 + 2 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 68687 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 263-226 chr2 229664804 229665020 + 2 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 49643 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 290-382 chr6 45240784 45240958 + 2 NA intron (NM_001350325, intron 2 of 10) HERVK9-int|LTR|ERVK -43101 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 331-298 chr2 179921488 179921776 + 2 NA Intergenic Intergenic -60020 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 140-61 chr6 54783139 54783212 + 2 NA Intergenic Intergenic -63596 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 591-58 chr18 13846411 13846917 + 2 NA Intergenic L1MEf|LINE|L1 22515 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 532-33 chr11 56064602 56064977 + 2 NA Intergenic L1ME1|LINE|L1 -28519 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 165-22 chr12 2254397 2254534 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 -15311 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 307-435 chr6 146395638 146395856 + 2 NA intron (NM_001278065, intron 7 of 9) intron (NM_001278065, intron 7 of 9) -148086 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 581-137 chr5 63223411 63223974 + 2 NA Intergenic HAL1|LINE|L1 644873 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 375-42 chr10 39318035 39318284 + 2 NA Intergenic ALR/Alpha|Satellite|centr 621563 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 273-135 chr14 62270184 62270395 + 2 NA Intergenic Intergenic -130316 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 269-238 chr21 37381142 37381376 + 2 NA intron (NM_001347723, intron 1 of 10) intron (NM_001347723, intron 1 of 10) 13702 NM_101395 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 250-291 chr3 157852969 157853146 + 2 NA Intergenic Intergenic 253106 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 244-42 chr10 122319376 122319543 + 2 NA intron (NM_001318189, intron 10 of 15) L1ME1|LINE|L1 48163 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 522-158 chr20 42832111 42832466 + 2 NA intron (NM_133170, intron 2 of 31) L1PREC2|LINE|L1 -136455 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 326-144 chr14 28571631 28571927 + 2 NA Intergenic Intergenic 193540 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 310-408 chr5 83535498 83535759 + 2 NA intron (NR_136215, intron 1 of 2) intron (NR_136215, intron 1 of 2) 26686 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 179-3 chr10 22284286 22284440 + 2 NA Intergenic AluY|SINE|Alu -32020 NM_001204062 100532731 Hs.380403 NM_001204062 ENSG00000269897 COMMD3-BMI1 BMI1|PCGF4|RNF51 COMMD3-BMI1 readthrough protein-coding 265-327 chr6 2104252 2104429 + 2 NA intron (NM_001253846, intron 4 of 10) intron (NM_001253846, intron 4 of 10) 71651 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 266-20 chr1 183249091 183249267 + 2 NA 3' UTR (NM_015039, exon 11 of 11) 3' UTR (NM_015039, exon 11 of 11) 55695 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 217-376 chr8 130668673 130668845 + 2 NA Intergenic Intergenic -225085 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 403-335 chrX 81822543 81822914 + 2 NA Intergenic L1MB7|LINE|L1 620626 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 320-138 chr13 103342224 103342433 + 2 NA Intergenic L1MA4|LINE|L1 -82872 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 496-16 chr1 119120522 119120868 + 2 NA intron (NM_015836, intron 1 of 5) L1PB1|LINE|L1 -19701 NR_125977 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 555-23 chr10 77136304 77136692 + 2 NA intron (NM_001271519, intron 5 of 28) L1MB2|LINE|L1 -4333 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 436-224 chr4 156854059 156854417 + 2 NA intron (NM_016205, intron 1 of 5) intron (NM_016205, intron 1 of 5) 117561 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 403-304 chr8 77622186 77622498 + 2 NA Intergenic Intergenic 171645 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 555-184 chr7 41230591 41231020 + 2 NA Intergenic L1PB1|LINE|L1 129201 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 239-379 chr7 70106108 70106315 + 2 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 507736 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 655-20 chr11 71073938 71074459 + 2 NA intron (NM_012309, intron 8 of 24) intron (NM_012309, intron 8 of 24) 150598 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 322-448 chr6 19057943 19058239 + 2 NA Intergenic L1MA3|LINE|L1 122389 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 211-27 chr10 33375742 33375916 + 2 NA Intergenic Intergenic -40924 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 378-324 chr4 156076473 156076701 + 2 NA Intergenic L1MB7|LINE|L1 -122721 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 357-201 chr2 66823656 66823852 + 2 NA Intergenic MIR|SINE|MIR -80682 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 284-296 chr4 116309948 116310199 + 2 NA Intergenic LOR1a|LTR|ERV1 10348 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 340-370 chr3 98111582 98111882 + 2 NA Intergenic MER61-int|LTR|ERV1 -20966 NM_001005338 26341 Hs.537383 NM_001005338 ENSG00000231192 OR5H1 HSHTPCRX14|HTPCRX14 olfactory receptor family 5 subfamily H member 1 protein-coding 349-374 chr4 71357804 71358056 + 2 NA intron (NM_003759, intron 3 of 22) intron (NM_003759, intron 3 of 22) 18877 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 445-73 chr14 80679939 80680269 + 2 NA intron (NM_152446, intron 19 of 24) L1PA15-16|LINE|L1 261634 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 273-376 chr5 176185982 176186175 + 2 NA intron (NR_036494, intron 3 of 25) intron (NR_036494, intron 3 of 25) 13217 NR_036494 643201 Hs.390285 NR_036494 ENSG00000248596 LOC643201 - centrosomal protein 192kDa pseudogene pseudo 298-353 chr5 8642288 8642493 + 2 NA Intergenic Intergenic 181465 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 349-44 chr10 3351597 3351874 + 2 NA intron (NR_131187, intron 1 of 1) intron (NR_131187, intron 1 of 1) 33040 NR_131187 105376360 Hs.212226 NR_131187 LOC105376360 - uncharacterized LOC105376360 ncRNA 386-337 chr7 132427068 132427361 + 2 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 149256 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 215-331 chr9 22876109 22876273 + 2 NA Intergenic Intergenic 229991 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 363-356 chr5 39539304 39539567 + 2 NA Intergenic Intergenic 19004 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 636-61 chr18 60707446 60707900 + 2 NA Intergenic LTR16E1|LTR|ERVL -334898 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 326-202 chr18 2086368 2086614 + 2 NA Intergenic Intergenic 485014 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 555-3 chr1 61510942 61511323 + 2 NA Intergenic Intergenic -143110 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 448-284 chr8 83498348 83498726 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 94779 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 188-88 chr2 8471526 8471635 + 2 NA Intergenic Intergenic 112212 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 383-307 chr5 28139120 28139411 + 2 NA Intergenic Intergenic 148400 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 528-131 chr2 122156297 122156754 + 2 NA Intergenic Intergenic 400874 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 339-185 chr15 95418937 95419135 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -14057 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 746-39 chr2 67896589 67897282 + 2 NA Intergenic Intergenic -71373 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 339-518 chr7 3864779 3864988 + 2 NA intron (NM_152744, intron 5 of 44) LTR79|LTR|ERVL -264802 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 339-141 chr13 61266032 61266258 + 2 NA Intergenic Intergenic -66265 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 262-307 chr4 55219469 55219630 + 2 NA Intergenic Intergenic -93954 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 294-391 chr5 147652071 147652274 + 2 NA intron (NM_001282282, intron 2 of 20) MIR|SINE|MIR 92178 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 325-106 chr11 93252858 93253053 + 2 NA Intergenic Intergenic -54964 NM_152313 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 235-163 chr2 33791584 33791771 + 2 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -63460 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 361-87 chr11 109156179 109156385 + 2 NA Intergenic L1MEf|LINE|L1 -265908 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 350-571 chrX 84389708 84389894 + 2 NA intron (NM_001177478, intron 4 of 9) L1PA16|LINE|L1 112652 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 344-271 chr20 10422245 10422507 + 2 NA intron (NR_072977, intron 1 of 4) intron (NR_072977, intron 1 of 4) 9549 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 442-277 chr7 111343198 111343615 + 2 NA intron (NM_032549, intron 3 of 5) L2c|LINE|L2 218885 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 374-101 chr14 57093712 57094083 + 2 NA Intergenic LTR33A|LTR|ERVL 175008 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 362-364 chr5 162709008 162709201 + 2 NA Intergenic Intergenic 641462 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 315-360 chr4 177158221 177158472 + 2 NA Intergenic L1MB2|LINE|L1 -151528 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 406-228 chr5 44748413 44748762 + 2 NA intron (NR_109865, intron 1 of 2) L1M6|LINE|L1 60206 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 488-169 chr3 34238399 34238810 + 2 NA Intergenic Intergenic 439974 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 328-412 chr4 95774306 95774538 + 2 NA Intergenic L1PB4|LINE|L1 -65671 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 312-323 chr3 42848947 42849163 + 2 NA intron (NM_001296, intron 2 of 2) L1MC4a|LINE|L1 26824 NM_004391 1582 Hs.447793 NM_004391 ENSG00000180432 CYP8B1 CP8B|CYP12 cytochrome P450 family 8 subfamily B member 1 protein-coding 294-20 chr1 186182746 186182996 + 2 NA intron (NM_031935, intron 105 of 106) L2c|LINE|L2 -113402 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 369-118 chr14 66617660 66617973 + 2 NA intron (NM_001024218, intron 1 of 21) L1ME2z|LINE|L1 110409 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 228-342 chr8 101603435 101603647 + 2 NA intron (NM_024915, intron 8 of 15) intron (NM_024915, intron 8 of 15) 111102 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 518-276 chr7 53386062 53386485 + 2 NA Intergenic MER41A|LTR|ERV1 350640 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 563-194 chr9 77808513 77808904 + 2 NA intron (NM_002072, intron 3 of 6) intron (NM_002072, intron 3 of 6) -160386 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 305-14 chr1 74730565 74730805 + 2 NA intron (NM_001130042, intron 1 of 9) MIRc|SINE|MIR 2365 NM_001889 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 328-79 chr11 38811097 38811320 + 2 NA Intergenic L1P1|LINE|L1 162350 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 272-222 chr2 177746784 177746956 + 2 NA intron (NM_001077197, intron 11 of 20) L1MEj|LINE|L1 73548 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 326-542 chr8 107454184 107454455 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 43599 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 308-225 chr2 53529115 53529286 + 2 NA Intergenic HAL1|LINE|L1 -238583 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 362-393 chr6 161179311 161179577 + 2 NA intron (NM_020133, intron 2 of 8) MIR|SINE|MIR -17462 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 497-164 chr21 44717225 44717595 + 2 NA Intergenic L1M5|LINE|L1 -5838 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|ECTD14|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding 293-428 chr8 51321007 51321273 + 2 NA intron (NM_144651, intron 21 of 22) intron (NM_144651, intron 21 of 22) 488305 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 267-113 chr14 72287114 72287349 + 2 NA intron (NM_001370288, intron 2 of 16) L1MA10|LINE|L1 -229589 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 472-124 chr17 54604570 54604865 + 2 NA Intergenic L1MEf|LINE|L1 -295974 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 236-320 chr7 33879044 33879223 + 2 NA Intergenic LTR82B|LTR|ERVL -25782 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 269-12 chr1 80043132 80043349 + 2 NA Intergenic AluJr4|SINE|Alu -492515 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 180-42 chr13 91265004 91265174 + 2 NA Intergenic L1ME1|LINE|L1 -53391 NR_047004 100874150 Hs.711947 NR_047004 LINC00379 - long intergenic non-protein coding RNA 379 ncRNA 289-503 chrX 80733798 80734028 + 2 NA intron (NM_153252, intron 11 of 40) intron (NM_153252, intron 11 of 40) 75964 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 466-134 chr2 113985926 113986305 + 2 NA intron (NR_148508, intron 1 of 1) intron (NR_148508, intron 1 of 1) -6131 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 459-244 chr5 118584967 118585342 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -11034 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 287-60 chr10 76188814 76189004 + 2 NA intron (NM_001305581, intron 5 of 6) MER119|DNA|hAT-Charlie 406148 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 435-126 chr2 118877491 118877802 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -29463 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 118-36 chr3 118214835 118214934 + 2 NA Intergenic Intergenic -426884 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 341-326 chr3 28066151 28066403 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger -175342 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 228-333 chr8 54807380 54807560 + 2 NA Intergenic Intergenic 191374 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 269-185 chr2 36647314 36647504 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -49241 NM_005102 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 569-13 chr1 173547533 173548050 + 2 NA intron (NM_178527, intron 12 of 27) intron (NM_178527, intron 12 of 27) 55281 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 309-304 chr20 42169818 42170037 + 2 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -515556 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 256-197 chr2 72052059 72052292 + 2 NA Intergenic L1ME3G|LINE|L1 95687 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 305-511 chr7 85366446 85366720 + 2 NA Intergenic L1MA8|LINE|L1 -54539 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 339-38 chr1 200008843 200009053 + 2 NA Intergenic L1MA4|LINE|L1 -18762 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 663-61 chr2 221144767 221145217 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 427312 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 197-87 chr2 14166763 14166907 + 2 NA Intergenic Intergenic 234123 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 332-353 chr3 167498940 167499264 + 2 NA intron (NM_001348951, intron 18 of 18) intron (NM_001348951, intron 18 of 18) -24970 NM_001012303 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 370-446 chr8 116065300 116065507 + 2 NA intron (NR_046215, intron 7 of 13) L2|LINE|L2 259656 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 228-327 chr7 125517065 125517258 + 2 NA Intergenic Intergenic -252870 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 313-232 chr2 14773421 14773586 + 2 NA Intergenic Intergenic 140786 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 332-27 chr1 166058098 166058321 + 2 NA non-coding (NR_135199, exon 3 of 3) non-coding (NR_135199, exon 3 of 3) 96589 NR_030626 100126349 NR_030626 ENSG00000215952 MIR921 MIRN921|hsa-mir-921 microRNA 921 ncRNA 300-42 chr10 56256537 56256820 + 2 NA Intergenic Intergenic 104581 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 605-77 chr3 96963955 96964533 + 2 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 149650 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 294-49 chr10 114168718 114168973 + 2 NA intron (NM_018017, intron 1 of 15) LTR8B|LTR|ERV1 5334 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 197-57 chr14 52406714 52406857 + 2 NA Intergenic Intergenic 92473 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 534-141 chr20 20919035 20919524 + 2 NA Intergenic L1M4|LINE|L1 187079 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 484-161 chr21 41147104 41147533 + 2 NA intron (NR_024100, intron 1 of 1) intron (NR_024100, intron 1 of 1) 746 NR_024100 284835 Hs.106234 NR_024100 ENSG00000226496 LINC00323 C21orf130|NCRNA00323|PRED42 long intergenic non-protein coding RNA 323 ncRNA 164-20 chr11 95200395 95200523 + 2 NA intron (NM_001271594, intron 1 of 8) intron (NM_001271594, intron 1 of 8) -29727 NR_110295 100129203 Hs.191599 NR_110295 LOC100129203 - uncharacterized LOC100129203 ncRNA 528-257 chr8 134296634 134297030 + 2 NA Intergenic MIR|SINE|MIR -301239 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 422-77 chr14 59320333 59320630 + 2 NA intron (NM_001270520, intron 4 of 24) intron (NM_001270520, intron 4 of 24) 57040 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 345-344 chr3 25600628 25600854 + 2 NA intron (NM_001330700, intron 34 of 35) intron (NM_001330700, intron 34 of 35) 63631 NM_001068 7155 Hs.475733 NM_001068 ENSG00000077097 TOP2B TOPIIB|top2beta DNA topoisomerase II beta protein-coding 300-326 chr4 69644276 69644493 + 2 NA intron (NM_001252274, intron 2 of 6) intron (NM_001252274, intron 2 of 6) 3314 NM_001301239 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 248-288 chr4 100875024 100875174 + 2 NA Intergenic LTR16C|LTR|ERVL -199986 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 204-51 chr12 15468701 15468857 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -77832 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 244-338 chr7 14409925 14410135 + 2 NA intron (NM_001350717, intron 20 of 24) Tigger2b_Pri|DNA|TcMar-Tigger -418605 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 292-305 chr4 19940897 19941079 + 2 NA Intergenic Intergenic -310917 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 238-218 chr21 37466132 37466357 + 2 NA intron (NM_001347721, intron 2 of 11) intron (NM_001347721, intron 2 of 11) 45945 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 603-156 chr7 71076116 71076663 + 2 NA Intergenic L1MB2|LINE|L1 -55755 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 326-506 chr7 97269020 97269275 + 2 NA Intergenic L1PB2|LINE|L1 152554 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 429-111 chr16 55203241 55203495 + 2 NA Intergenic AluY|SINE|Alu -121191 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 738-70 chr8 87825447 87826123 + 2 NA Intergenic Intergenic 48230 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 313-364 chr3 165507342 165507615 + 2 NA intron (NR_125764, intron 4 of 5) THE1D|LTR|ERVL-MaLR 300518 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 418-280 chr8 54886362 54886763 + 2 NA Intergenic L1MA9|LINE|L1 -215466 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 541-172 chr4 100771758 100772229 + 2 NA Intergenic L1M3|LINE|L1 -96880 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 278-275 chr3 76430761 76430949 + 2 NA Intergenic Intergenic -609244 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 489-46 chr11 112989151 112989529 + 2 NA intron (NM_181351, intron 1 of 18) L1MA9|LINE|L1 -25880 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 227-303 chr5 180357020 180357156 + 2 NA Intergenic Intergenic -3752 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 305-245 chr2 39547788 39548024 + 2 NA intron (NR_037875, intron 5 of 5) LTR32|LTR|ERVL 110490 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 272-445 chr8 71887438 71887685 + 2 NA intron (NR_033651, intron 1 of 2) L1MA1|LINE|L1 -43065 NM_005098 9242 Hs.442619 NM_005098 ENSG00000178860 MSC ABF-1|ABF1|MYOR|bHLHa22 musculin protein-coding 386-344 chr8 43735547 43735766 + 2 NA Intergenic ALR/Alpha|Satellite|centr 443214 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 421-108 chr17 59835614 59835853 + 2 NA intron (NM_001329395, intron 11 of 12) AluSp|SINE|Alu -5533 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 372-527 chrX 74846374 74846600 + 2 NA intron (NM_001008537, intron 1 of 3) intron (NM_001008537, intron 1 of 3) 78965 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 279-375 chr6 131972486 131972677 + 2 NA Intergenic Intergenic -21209 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 429-248 chr5 175554170 175554545 + 2 NA Intergenic LTR54B|LTR|ERV1 75797 NM_001322978 94081 Hs.369440 NM_022754 ENSG00000164466 SFXN1 SLC56A1|TCC sideroflexin 1 protein-coding 391-152 chr19 22472657 22472986 + 2 NA intron (NR_160728, intron 1 of 1) intron (NR_160728, intron 1 of 1) -50475 NM_001098626 148198 Hs.667355 NM_001098626 ENSG00000197360 ZNF98 F7175|ZNF739 zinc finger protein 98 protein-coding 254-268 chr4 34411577 34411758 + 2 NA Intergenic L1PA14|LINE|L1 -141920 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 336-130 chr12 43380650 43380839 + 2 NA intron (NM_025003, intron 31 of 38) L1MB7|LINE|L1 171459 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 383-278 chr4 53024982 53025304 + 2 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 162826 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 474-254 chr6 68804447 68804813 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 169348 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 448-14 chr1 152212191 152212615 + 2 NA 3' UTR (NM_001009931, exon 3 of 3) 3' UTR (NM_001009931, exon 3 of 3) 11793 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 489-113 chr17_KI270729v1_random 17 291 + 2 NA NA (TTCCA)n|Simple_repeat|Simple_repeat NA NA 354-74 chr11 10205249 10205449 + 2 NA intron (NM_030962, intron 1 of 39) L1MDa|LINE|L1 88858 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 241-269 chr4 71722918 71723117 + 2 NA Intergenic L1PA7|LINE|L1 61062 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 380-31 chr1 247247173 247247426 + 2 NA Intergenic AluJr|SINE|Alu -8773 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 272-4 chr1 27518939 27519199 + 2 NA Intergenic L2|LINE|L2 -28902 NM_001201404 10163 Hs.469244 NM_006990 ENSG00000158195 WASF2 IMD2|SCAR2|WASF4|WAVE2|dJ393P12.2 WASP family member 2 protein-coding 375-432 chr8 138896439 138896686 + 2 NA intron (NM_152888, intron 1 of 64) L1MDa|LINE|L1 17479 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 328-464 chr5 103502378 103502664 + 2 NA Intergenic Intergenic 39464 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 369-58 chr11 55848702 55848951 + 2 NA Intergenic L1MCc|LINE|L1 10074 NM_001005496 390144 Hs.554527 NM_001005496 ENSG00000205029 OR5D16 OR11-154 olfactory receptor family 5 subfamily D member 16 protein-coding 218-137 chr19 29560881 29561046 + 2 NA intron (NM_001146339, intron 4 of 4) intron (NM_001146339, intron 4 of 4) 34379 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 364-161 chr16 79167797 79168147 + 2 NA intron (NM_001291997, intron 7 of 7) L1MB5|LINE|L1 432765 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 215-242 chr4 187677635 187677782 + 2 NA Intergenic Intergenic -5067 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 298-471 chr8 119512072 119512266 + 2 NA Intergenic Charlie16a|DNA|hAT-Charlie 80839 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 312-205 chr18 62299327 62299588 + 2 NA intron (NR_144409, intron 31 of 31) intron (NR_144409, intron 31 of 31) -25830 NM_001270949 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 354-457 chr8 63027405 63027694 + 2 NA intron (NM_003878, intron 3 of 8) intron (NM_003878, intron 3 of 8) 11257 NM_003878 8836 Hs.78619 NM_003878 ENSG00000137563 GGH GH gamma-glutamyl hydrolase protein-coding 411-240 chr5 129654038 129654284 + 2 NA intron (NM_133638, intron 13 of 22) intron (NM_133638, intron 13 of 22) -93933 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 599-45 chr17 77660007 77660492 + 2 NA Intergenic Intergenic 68310 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 359-403 chr5 94974794 94975124 + 2 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 106907 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 199-54 chr14 43005294 43005479 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 1398530 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 270-284 chr5 3966038 3966202 + 2 NA Intergenic Intergenic 370288 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 549-164 chr5 46088061 46088449 + 2 NA Intergenic ALR/Alpha|Satellite|centr -391875 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 122-24 chr2 126726639 126726743 + 2 NA Intergenic L1M4|LINE|L1 70533 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 439-307 chr9 80574949 80575252 + 2 NA Intergenic L1PB1|LINE|L1 600077 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 543-9 chr1 98551159 98551546 + 2 NA Intergenic L1MA1|LINE|L1 -110369 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 162-31 chr12 128127016 128127130 + 2 NA Intergenic L1ME1|LINE|L1 8856 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 500-211 chr4 91955912 91956356 + 2 NA Intergenic L1PA16|LINE|L1 321168 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 294-96 chr13 34395662 34395848 + 2 NA intron (NR_146542, intron 1 of 3) L1MA6|LINE|L1 47712 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 351-281 chr22 28178645 28178858 + 2 NA intron (NM_001145418, intron 5 of 22) MIRb|SINE|MIR -258139 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 269-282 chr4 86103240 86103499 + 2 NA intron (NM_001363657, intron 5 of 13) intron (NM_001363657, intron 5 of 13) -16437 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 153-50 chr2 49203944 49204061 + 2 NA Intergenic HAL1|LINE|L1 -49475 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 344-163 chr15 94990493 94990724 + 2 NA Intergenic Intergenic 135245 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 314-466 chr5 79525416 79525627 + 2 NA Intergenic LTR75|LTR|ERVL -11387 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 672-57 chr2 107556893 107557411 + 2 NA TTS (NR_146968) TTS (NR_146968) 27733 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 272-79 chr11 112558163 112558367 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -2463 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 338-148 chr13 53359210 53359397 + 2 NA Intergenic Intergenic -207403 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 481-196 chr3 55190013 55190373 + 2 NA TTS (NR_147142) TTS (NR_147142) 12021 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 681-54 chr4 2328331 2329007 + 2 NA 3' UTR (NM_001172660, exon 7 of 7) 3' UTR (NM_001172660, exon 7 of 7) 36145 NM_001172660 57732 Hs.292056 NM_020972 ENSG00000159733 ZFYVE28 LST2|LYST2 zinc finger FYVE-type containing 28 protein-coding 288-177 chr2 28707683 28707842 + 2 NA Intergenic L3|LINE|CR1 28443 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 369-266 chr3 69473359 69473571 + 2 NA Intergenic Intergenic -87377 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 258-158 chr17 33169903 33170071 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 123001 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 388-223 chr3 37995450 37995712 + 2 NA intron (NM_015873, intron 3 of 18) intron (NM_015873, intron 3 of 18) 1443 NR_163266 50853 Hs.103665 NM_015873 ENSG00000136059 VILL - villin like protein-coding 270-355 chr7 33774412 33774650 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -130384 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 352-179 chr17 32985162 32985368 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -6582 NM_001317226 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 337-83 chr11 37395549 37395850 + 2 NA Intergenic L1M4a1|LINE|L1 -542902 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 279-154 chr19 29171018 29171183 + 2 NA Intergenic Intergenic 42051 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 694-27 chr12 94812618 94813182 + 2 NA Intergenic L1M4|LINE|L1 -21498 NR_030171 574449 NR_030171 ENSG00000283998 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 221-75 chr13 91395172 91395331 + 2 NA Intergenic Intergenic -3370 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 206-250 chr7 34381702 34381841 + 2 NA intron (NR_033665, intron 3 of 3) MER57A-int|LTR|ERV1 -276447 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 264-241 chr20 47132281 47132463 + 2 NA intron (NM_172110, intron 9 of 13) MER113|DNA|hAT-Charlie -34595 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 227-317 chr6 103346675 103346836 + 2 NA Intergenic Intergenic 1512791 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 301-11 chr1 106403006 106403242 + 2 NA Intergenic Intergenic -374871 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 355-125 chr12 23853088 23853337 + 2 NA intron (NM_001330785, intron 2 of 14) intron (NM_001330785, intron 2 of 14) 96458 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 277-330 chr5 72519129 72519299 + 2 NA Intergenic Intergenic -11804 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 366-468 chr9 82709088 82709381 + 2 NA Intergenic Intergenic 353908 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 398-392 chrX 42300732 42300973 + 2 NA Intergenic MLT2F|LTR|ERVL -377298 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 210-275 chr7 110918653 110918800 + 2 NA intron (NM_032549, intron 4 of 5) AluSq2|SINE|Alu -172280 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 282-490 chr9 91206710 91206887 + 2 NA Intergenic L1MB7|LINE|L1 87736 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 254-258 chr3 176297216 176297386 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 52750 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 323-18 chr1 104427520 104427747 + 2 NA Intergenic L1MC1|LINE|L1 354610 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 370-242 chr2 126507893 126508254 + 2 NA Intergenic Intergenic -147862 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 256-121 chr14 47119913 47120154 + 2 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 223213 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 315-377 chr5 50704029 50704230 + 2 NA intron (NM_024615, intron 2 of 25) intron (NM_024615, intron 2 of 25) 36715 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 176-150 chr9 4216504 4216627 + 2 NA intron (NM_001042413, intron 2 of 10) intron (NM_001042413, intron 2 of 10) -64382 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 274-326 chr5 163325741 163325986 + 2 NA Intergenic Intergenic -111708 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 298-157 chr16 73966413 73966596 + 2 NA Intergenic Intergenic 249017 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 345-51 chr10 32463457 32463736 + 2 NA intron (NR_109827, intron 6 of 8) intron (NR_109827, intron 6 of 8) 17456 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 145-71 chr6 66879894 66880034 + 2 NA Intergenic MER33|DNA|hAT-Charlie 1092085 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 552-27 chr10 127763398 127763780 + 2 NA Intergenic MER57B1|LTR|ERV1 26404 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 359-87 chr11 50391233 50391574 + 2 NA Intergenic ALR/Alpha|Satellite|centr -17744 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 139-21 chr12 18398382 18398461 + 2 NA intron (NM_001288774, intron 15 of 32) MIR3|SINE|MIR 136881 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 323-528 chr8 20498011 20498311 + 2 NA Intergenic Intergenic 116765 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 431-284 chr8 11528804 11529139 + 2 NA intron (NM_001330465, intron 1 of 11).2 L1PA10|LINE|L1 34584 NM_001330465 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 355-308 chr22 49689560 49689896 + 2 NA Intergenic Intergenic -32209 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 431-164 chr20 61083168 61083436 + 2 NA Intergenic Intergenic 4238 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 313-449 chr5 144907711 144907906 + 2 NA Intergenic L1PA7|LINE|L1 702417 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 247-245 chr21 32974674 32974905 + 2 NA Intergenic Intergenic 15901 NR_135522 102724502 Hs.130572 NR_135522 ENSG00000228961 LINC01690 - long intergenic non-protein coding RNA 1690 ncRNA 401-155 chr2 52803946 52804210 + 2 NA Intergenic Intergenic -101463 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 326-229 chr2 16964714 16964893 + 2 NA Intergenic AluJr|SINE|Alu -298969 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 284-343 chr6 40162084 40162344 + 2 NA Intergenic Intergenic 193792 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 424-281 chr8 115140929 115141299 + 2 NA Intergenic Intergenic 526899 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 573-183 chr7 46461939 46462399 + 2 NA Intergenic Intergenic 234953 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 669-70 chr22 40116777 40117176 + 2 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) -60949 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 279-234 chr21 28723836 28724014 + 2 NA Intergenic Intergenic 161442 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 556-117 chr2 217111470 217112007 + 2 NA Intergenic L1MD3|LINE|L1 -170995 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 515-52 chr12 12277967 12278415 + 2 NA Intergenic L1M4|LINE|L1 -11147 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 461-241 chr7 3339974 3340312 + 2 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 38891 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 360-340 chr5 2902753 2903000 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -14978 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 236-131 chr16 3922806 3922957 + 2 NA Intergenic Intergenic 27563 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 145-4 chr1 183191965 183192054 + 2 NA intron (NM_005562, intron 1 of 22) intron (NM_005562, intron 1 of 22) 5745 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 265-63 chr11 42404137 42404375 + 2 NA Intergenic Intergenic -150566 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 248-144 chr16 75752369 75752541 + 2 NA Intergenic Intergenic -25965 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 479-81 chr17 30960191 30960596 + 2 NA Intergenic AluSc|SINE|Alu -10646 NM_197939 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 406-267 chr7 7112393 7112732 + 2 NA Intergenic L1ME3A|LINE|L1 -15776 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 247-167 chr18 33874116 33874308 + 2 NA intron (NM_001353232, intron 9 of 9) intron (NM_001353232, intron 9 of 9) 174400 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 354-426 chr7 37980796 37981120 + 2 NA Intergenic Intergenic 59639 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 306-473 chr7 62235767 62235970 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1068188 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 362-467 chr9 123836427 123836758 + 2 NA intron (NM_001352968, intron 2 of 18) intron (NM_001352968, intron 2 of 18) 93534 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 264-290 chr4 42959884 42960075 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 66713 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 426-57 chr12 9032274 9032640 + 2 NA Intergenic LTR8B|LTR|ERV1 32613 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 341-421 chr5 16103284 16103581 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 76359 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 309-104 chr12 39151487 39151730 + 2 NA Intergenic L1MA2|LINE|L1 -246017 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 1072-7 chr17 57091997 57092910 + 2 NA intron (NM_001370423, intron 2 of 11) intron (NM_001370423, intron 2 of 11) -3036 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 374-306 chr5 35615481 35615719 + 2 NA Intergenic L1MA4A|LINE|L1 -2263 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 356-518 chrX 84681372 84681684 + 2 NA Intergenic L1MA6|LINE|L1 -179075 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 366-260 chr22 23060072 23060282 + 2 NA intron (NM_014433, intron 6 of 6) AluJr|SINE|Alu -10342 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 266-424 chr8 102708199 102708446 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 52074 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 250-107 chr13 69499941 69500123 + 2 NA Intergenic HERVL-int|LTR|ERVL 277686 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 606-36 chr12 18119534 18119964 + 2 NA Intergenic Intergenic -29556 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 258-186 chr2 64534106 64534277 + 2 NA intron (NM_001002243, intron 1 of 8) intron (NM_001002243, intron 1 of 8) 8678 NR_039633 100616419 NR_039633 ENSG00000283204 MIR4434 - microRNA 4434 ncRNA 235-223 chr3 4203077 4203204 + 2 NA Intergenic L1MA3|LINE|L1 -100164 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 258-167 chr18 10105483 10105666 + 2 NA Intergenic L1PA16|LINE|L1 191558 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 316-169 chr14 54077671 54077932 + 2 NA Intergenic Intergenic -120910 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 719-40 chr2 130865027 130865536 + 2 NA intron (NM_001367493, intron 1 of 13) intron (NM_001367493, intron 1 of 13) 28367 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 386-238 chr3 77754862 77755076 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 293994 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 552-213 chr8 111912657 111913047 + 2 NA Intergenic Intergenic 536213 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 280-250 chr3 24898603 24898786 + 2 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 69371 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 322-549 chr8 132724744 132724917 + 2 NA intron (NM_001145153, intron 5 of 8) MER11A|LTR|ERVK 35752 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 363-253 chr20 24217600 24217850 + 2 NA intron (NR_040102, intron 2 of 3) MER57-int|LTR|ERV1 17958 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 314-367 chr3 22754182 22754459 + 2 NA Intergenic Intergenic 448258 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 578-85 chr2 68477297 68477788 + 2 NA intron (NM_173545, intron 1 of 9) AluJr|SINE|Alu 9957 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 309-543 chr8 79137297 79137542 + 2 NA Intergenic Intergenic -194769 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 612-6 chr1 162219248 162219706 + 2 NA intron (NM_014697, intron 2 of 9) intron (NM_014697, intron 2 of 9) 62370 NR_039798 100616386 NR_039798 ENSG00000266144 MIR4654 mir-4654 microRNA 4654 ncRNA 357-14 chr1 113565033 113565254 + 2 NA intron (NM_001142782, intron 2 of 20) AluSx|SINE|Alu 174628 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 345-460 chr6 40001949 40002179 + 2 NA Intergenic Intergenic -67602 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 215-269 chr5 167374219 167374352 + 2 NA intron (NM_001122679, intron 2 of 29) Tigger3a|DNA|TcMar-Tigger -199374 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 587-153 chr7 67503762 67504168 + 2 NA Intergenic AluJb|SINE|Alu 167989 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 249-275 chr3 147147938 147148091 + 2 NA Intergenic L1PA16|LINE|L1 226091 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 320-381 chr4 35736023 35736250 + 2 NA Intergenic MIR|SINE|MIR 507803 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 254-377 chr7 34344502 34344683 + 2 NA Intergenic Intergenic -313626 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 738-23 chr15 86140606 86141224 + 2 NA intron (NM_152336, intron 1 of 24) L2c|LINE|L2 -24198 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 492-264 chr8 111278437 111278809 + 2 NA Intergenic Intergenic -42420 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 360-201 chr2 14275882 14276090 + 2 NA intron (NR_103814, intron 2 of 3) MER63B|DNA|hAT-Blackjack 124972 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 189-230 chr9 107481534 107481654 + 2 NA Intergenic Intergenic 8175 NM_004235 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 187-186 chr9 26988361 26988538 + 2 NA intron (NM_001099224, intron 6 of 13) intron (NM_001099224, intron 6 of 13) 17223 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 483-236 chr7 22384879 22385193 + 2 NA Intergenic MIRc|SINE|MIR -27882 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 343-104 chr12 63973183 63973457 + 2 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 128620 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 196-136 chr2 135340349 135340456 + 2 NA intron (NM_001286569, intron 6 of 21) AluSq2|SINE|Alu 190183 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 722-25 chr14 24703906 24704380 + 2 NA Intergenic Intergenic -69953 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 491-250 chr7 80368146 80368572 + 2 NA Intergenic AluSx1|SINE|Alu 6080 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 326-363 chr4 17412900 17413071 + 2 NA Intergenic LOR1b|LTR|ERV1 -92103 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 334-24 chr1 113445667 113445894 + 2 NA intron (NM_001142782, intron 1 of 20) L1M4c|LINE|L1 55265 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 380-183 chr2 82387329 82387681 + 2 NA Intergenic L1M1|LINE|L1 -469298 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 385-115 chr15 70657867 70658150 + 2 NA intron (NM_018003, intron 18 of 18) AluJr|SINE|Alu 22759 NR_126482 104548973 NR_126482 ENSG00000280515 SALRNA2 SAL-RNA2|XLOC_025931 senescence associated long non-coding RNA 2 ncRNA 400-279 chr5 43849612 43849922 + 2 NA Intergenic L2c|LINE|L2 -246537 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 191-189 chr6 122526087 122526237 + 2 NA intron (NM_001270393, intron 3 of 7) Tigger1|DNA|TcMar-Tigger 54245 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 295-92 chr12 15139901 15140182 + 2 NA intron (NM_032918, intron 2 of 4) L1MC3|LINE|L1 -11882 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 924-35 chr5 130378333 130379082 + 2 NA Intergenic Intergenic 474242 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 336-397 chr4 37652557 37652739 + 2 NA intron (NM_001085400, intron 1 of 6) intron (NM_001085400, intron 1 of 6) 33728 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 281-110 chr13 111408825 111409055 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 88298 NM_152324 121793 Hs.210677 NM_152324 ENSG00000153495 TEX29 C13orf16|bA474D23.1 testis expressed 29 protein-coding 277-17 chr1 110172176 110172354 + 2 NA intron (NM_001010898, intron 3 of 11) intron (NM_001010898, intron 3 of 11) 21771 NM_001010898 388662 Hs.128382 NM_001010898 ENSG00000197106 SLC6A17 MRT48|NTT4 solute carrier family 6 member 17 protein-coding 238-298 chr5 66920116 66920256 + 2 NA intron (NM_015183, intron 3 of 27) intron (NM_015183, intron 3 of 27) -38887 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 413-256 chr5 180079555 180079938 + 2 NA Intergenic MIRb|SINE|MIR -7987 NM_018434 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 321-114 chr11 121048166 121048409 + 2 NA intron (NM_001363644, intron 4 of 8) intron (NM_001363644, intron 4 of 8) 24215 NM_001130047 219899 Hs.504136 NM_152715 ENSG00000154114 TBCEL El|LRRC35 tubulin folding cofactor E like protein-coding 262-464 chrX 45202560 45202769 + 2 NA Intergenic MER34B-int|LTR|ERV1 -1788 NM_176819 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 611-129 chr6 74509020 74509590 + 2 NA intron (NR_110856, intron 2 of 3) LTR41B|LTR|ERVL 439854 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 205-131 chr19 56545427 56545589 + 2 NA intron (NM_001308440, intron 2 of 6) intron (NM_001308440, intron 2 of 6) 6560 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 244-310 chr5 147187855 147188021 + 2 NA intron (NR_147190, intron 2 of 3) MamGypLTR1a|LTR|Gypsy 46921 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 348-233 chr2 115083634 115083944 + 2 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 19216 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 337-386 chr4 34137612 34137869 + 2 NA intron (NR_147184, intron 2 of 3) L1PA16|LINE|L1 -97847 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 157-123 chr7 95677165 95677283 + 2 NA Intergenic Intergenic -80708 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 309-20 chr1 172751135 172751334 + 2 NA Intergenic Intergenic 92131 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 157-7 chr1 97075973 97076101 + 2 NA Intergenic MIRb|SINE|MIR -19886 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 679-111 chr8 129541913 129542572 + 2 NA intron (NR_130917, intron 1 of 3) L2c|LINE|L2 32776 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 456-268 chr5 177235877 177236273 + 2 NA intron (NM_172349, intron 7 of 23) intron (NM_172349, intron 7 of 23) 67644 NM_001031677 53917 Hs.16258 NM_130781 ENSG00000169228 RAB24 - RAB24, member RAS oncogene family protein-coding 210-113 chr19 51952185 51952361 + 2 NA intron (NR_103847, intron 1 of 2) intron (NR_103847, intron 1 of 2) 3139 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 153-74 chr4 131630435 131630579 + 2 NA Intergenic Intergenic -134331 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 310-28 chr1 203360429 203360721 + 2 NA Intergenic Intergenic -9453 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 608-18 chr10 90219562 90220089 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy -262452 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 212-94 chr13 78488367 78488555 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -107661 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 319-440 chr5 179401869 179402063 + 2 NA Intergenic Intergenic -56505 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 268-292 chr4 124102820 124102964 + 2 NA Intergenic L1PA16|LINE|L1 328628 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 346-270 chr2 187858281 187858587 + 2 NA Intergenic Intergenic -303929 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 488-274 chr8 118431900 118432345 + 2 NA intron (NM_001349811, intron 3 of 4) L1ME2|LINE|L1 -188879 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 343-429 chr5 68621102 68621368 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 328658 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 255-102 chr14 26335962 26336195 + 2 NA Intergenic Intergenic 217352 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 388-62 chr11 54916040 54916317 + 2 NA Intergenic ALR/Alpha|Satellite|centr 209346 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 168-123 chr8 124970932 124971058 + 2 NA Intergenic L2c|LINE|L2 -2300 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 393-176 chr2 160167432 160167776 + 2 NA intron (NM_001282390, intron 6 of 13) intron (NM_001282390, intron 6 of 13) 32668 NM_001282389 3694 Hs.470399 NM_000888 ENSG00000115221 ITGB6 AI1H integrin subunit beta 6 protein-coding 335-196 chr17 34461624 34461883 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -98520 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 294-506 chr9 104853880 104854148 + 2 NA intron (NM_005502, intron 7 of 49) MLT1E2|LTR|ERVL-MaLR 74141 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 354-340 chr4 89760131 89760445 + 2 NA intron (NM_001146054, intron 4 of 5) intron (NM_001146054, intron 4 of 5) -76113 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 418-194 chr4 99783352 99783637 + 2 NA Intergenic MER39|LTR|ERV1 -33333 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 361-61 chr10 123673031 123673232 + 2 NA intron (NM_153442, intron 1 of 2) intron (NM_153442, intron 1 of 2) 6776 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 328-277 chr2 117348431 117348711 + 2 NA Intergenic Intergenic -466120 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 667-30 chr14 64676387 64677009 + 2 NA Intergenic LTR81C|LTR|Gypsy -27726 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 144-72 chr4 122127051 122127140 + 2 NA Intergenic Intergenic -43508 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 312-220 chr2 8486307 8486529 + 2 NA Intergenic L1MB1|LINE|L1 97374 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 207-309 chr9 24400542 24400741 + 2 NA Intergenic L1M5|LINE|L1 145035 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 394-66 chr11 116375323 116375672 + 2 NA Intergenic Intergenic -263925 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 539-27 chr10 57025730 57026191 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie 278599 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 369-225 chr2 183505553 183505767 + 2 NA Intergenic L1M3f|LINE|L1 381217 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 682-30 chr14 56019817 56020425 + 2 NA Intergenic Intergenic -98290 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 173-67 chr2 51367673 51367802 + 2 NA intron (NR_135237, intron 3 of 10) Charlie4a|DNA|hAT-Charlie 335136 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 342-303 chr22 45843611 45843870 + 2 NA 3' UTR (NM_001167621, exon 11 of 11) 3' UTR (NM_001167621, exon 11 of 11) 83216 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 230-347 chr7 46262466 46262660 + 2 NA Intergenic Intergenic -341291 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 415-32 chr10 82242165 82242459 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -9392 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 489-65 chr13 21779500 21779874 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 98473 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 742-77 chr8 53868178 53868655 + 2 NA intron (NM_001286674, intron 1 of 2) intron (NM_001286674, intron 1 of 2) -12456 NR_104578 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 406-200 chr4 9845612 9845911 + 2 NA intron (NM_001001290, intron 11 of 12) Tigger16a|DNA|TcMar-Tigger 64127 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 413-192 chr3 84030662 84030922 + 2 NA Intergenic Intergenic 838783 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 206-211 chr5 81799001 81799154 + 2 NA Intergenic Intergenic -47824 NM_001256735 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 345-421 chr5 66102459 66102642 + 2 NA Intergenic L1PBa1|LINE|L1 -41750 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 381-395 chr8 134280467 134280773 + 2 NA Intergenic Intergenic -317451 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 419-306 chr9 31411869 31412276 + 2 NA Intergenic Intergenic -30582 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 277-430 chr8 124387017 124387252 + 2 NA Intergenic HAL1|LINE|L1 -14435 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 452-289 chr9 29782405 29782768 + 2 NA Intergenic Intergenic -568985 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 222-40 chr10 62270932 62271119 + 2 NA Intergenic Intergenic -2181 NM_001282941 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 381-27 chr1 219755971 219756311 + 2 NA Intergenic L1ME1|LINE|L1 -142996 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 318-122 chr11 133305401 133305694 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 226954 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 398-71 chr12 26650630 26650979 + 2 NA intron (NM_002223, intron 21 of 56) intron (NM_002223, intron 21 of 56) 182390 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 407-48 chr11 54978677 54979072 + 2 NA Intergenic ALR/Alpha|Satellite|centr 272042 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 542-234 chr9 29811742 29812102 + 2 NA Intergenic L1MA9|LINE|L1 596532 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 308-298 chr3 77545133 77545337 + 2 NA intron (NM_001290039, intron 7 of 26) intron (NM_001290039, intron 7 of 26) 447223 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 301-332 chr4 112469378 112469551 + 2 NA Intergenic L1MD|LINE|L1 -45915 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 274-198 chr2 41776580 41776792 + 2 NA Intergenic Intergenic -100869 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 475-100 chr16 64677309 64677724 + 2 NA Intergenic L1ME3B|LINE|L1 444547 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 270-135 chr16 5681819 5682081 + 2 NA Intergenic Intergenic 49483 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 419-155 chr2 175347867 175348241 + 2 NA Intergenic Intergenic -166344 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 307-172 chr16 25772776 25773024 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 80941 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 428-134 chr2 112045890 112046219 + 2 NA Intergenic L1MEc|LINE|L1 -9215 NM_001329914 84910 Hs.656298 NM_032824 ENSG00000153214 TMEM87B - transmembrane protein 87B protein-coding 285-297 chr4 14079298 14079510 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -32564 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 304-114 chr12 70462635 70462862 + 2 NA Intergenic LOR1-int|LTR|ERV1 96458 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 296-27 chr1 240571681 240571849 + 2 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 40390 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 308-325 chr4 42195058 42195307 + 2 NA Intergenic MIR|SINE|MIR -42527 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 247-326 chr5 60569409 60569557 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -73197 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 294-108 chr14 36084552 36084816 + 2 NA intron (NR_073454, intron 1 of 2) MLT2D|LTR|ERVL 14257 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 172-62 chr2 118888569 118888688 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -40445 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 372-428 chr6 47948535 47948756 + 2 NA intron (NM_207499, intron 2 of 2) L2a|LINE|L2 120044 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 232-177 chr2 105291334 105291472 + 2 NA intron (NM_001142621, intron 4 of 11) MLT1A|LTR|ERVL-MaLR 38253 NR_137328 9392 Hs.446350 NM_004257 ENSG00000135966 TGFBRAP1 TRAP-1|TRAP1|VPS3 transforming growth factor beta receptor associated protein 1 protein-coding 267-283 chr4 23876452 23876643 + 2 NA intron (NM_001330752, intron 3 of 13) intron (NM_001330752, intron 3 of 13) 4745 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 289-217 chr2 53654663 53654921 + 2 NA Intergenic L1M5|LINE|L1 -112991 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 301-328 chr4 97265037 97265248 + 2 NA Intergenic Intergenic -101784 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 340-499 chr7 10558954 10559189 + 2 NA intron (NR_147499, intron 2 of 2) L1M1|LINE|L1 -143605 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 222-6 chr1 49978521 49978708 + 2 NA intron (NM_001323575, intron 1 of 12) L1ME4a|LINE|L1 45340 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 316-409 chr4 113140519 113140713 + 2 NA intron (NM_001354237, intron 1 of 46) intron (NM_001354237, intron 1 of 46) -11666 NR_107049 102465878 NR_107049 ENSG00000275810 MIR8082 hsa-mir-8082 microRNA 8082 ncRNA 202-65 chr14 29908160 29908289 + 2 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 18872 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 304-208 chr18 42833308 42833558 + 2 NA intron (NM_002930, intron 4 of 4) L1MA4A|LINE|L1 282252 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 517-119 chr2 3247775 3248175 + 2 NA intron (NM_001330531, intron 3 of 7) MSTB|LTR|ERVL-MaLR -121949 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 236-11 chr1 93491109 93491279 + 2 NA intron (NM_001024948, intron 1 of 13) AluJr|SINE|Alu 43063 NM_001024948 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 269-372 chr7 9976214 9976377 + 2 NA Intergenic Intergenic 342025 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 425-56 chr11 75128110 75128444 + 2 NA Intergenic AluJr4|SINE|Alu -22830 NM_007256 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 315-121 chr13 99120885 99121180 + 2 NA Intergenic Intergenic 34309 NR_047482 100861541 Hs.344872 NR_047482 DOCK9-DT DOCK9-AS2 DOCK9 divergent transcript ncRNA 339-79 chr10 117691390 117691684 + 2 NA Intergenic L1ME3F|LINE|L1 -146469 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 397-132 chr19 15081342 15081590 + 2 NA Intergenic Intergenic -5600 NM_001004713 126370 Hs.631610 NM_001004713 ENSG00000094661 OR1I1 OR19-20|OR1I1P|OR1I1Q olfactory receptor family 1 subfamily I member 1 protein-coding 287-438 chr9 81323261 81323432 + 2 NA Intergenic L1MA4A|LINE|L1 366189 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 332-340 chr3 114405911 114406099 + 2 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -22363 NM_001164342 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 292-2 chr1 12689312 12689461 + 2 NA Intergenic Intergenic -26724 NM_001103170 126767 Hs.464705 NM_001103169 ENSG00000188984 AADACL3 - arylacetamide deacetylase like 3 protein-coding 334-214 chr17 77878075 77878298 + 2 NA TTS (NR_028337) TTS (NR_028337) 5901 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 411-149 chr2 82915747 82916089 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 59115 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 205-271 chr8 74217799 74217965 + 2 NA Intergenic Intergenic 103479 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 802-8 chr10 65520945 65521563 + 2 NA Intergenic Intergenic -50171 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 294-405 chr6 62305314 62305486 + 2 NA Intergenic L1MEg|LINE|L1 -19173 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 350-81 chr11 99152624 99152944 + 2 NA intron (NM_001243270, intron 1 of 23) L1PA13|LINE|L1 131835 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 270-339 chr6 140827280 140827422 + 2 NA Intergenic Intergenic 143537 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 298-473 chr8 121701855 121702014 + 2 NA Intergenic L1ME3A|LINE|L1 -60494 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 544-208 chr7 43445885 43446268 + 2 NA intron (NM_001287059, intron 10 of 27) intron (NM_001287059, intron 10 of 27) 76466 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 235-21 chr1 175920252 175920453 + 2 NA Intergenic L3|LINE|CR1 43009 NR_125964 101928751 NR_125964 ENSG00000224718 LINC01657 - long intergenic non-protein coding RNA 1657 ncRNA 539-184 chr6 141883973 141884379 + 2 NA Intergenic L1ME1|LINE|L1 204623 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 491-219 chr5 145460953 145461441 + 2 NA Intergenic Intergenic 374145 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 325-218 chr17 35443310 35443502 + 2 NA intron (NM_144682, intron 4 of 5) intron (NM_144682, intron 4 of 5) 5360 NM_144682 146857 Hs.462833 NM_144682 ENSG00000154760 SLFN13 SLFN10|hSLFN13 schlafen family member 13 protein-coding 373-373 chr7 25783937 25784177 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 6062 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 281-335 chr4 150015056 150015200 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -63317 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 872-14 chr12 103702438 103702991 + 2 NA intron (NM_017564, intron 34 of 68) intron (NM_017564, intron 34 of 68) 115441 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 204-58 chr12 61825523 61825651 + 2 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 367252 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 202-228 chr6 141157364 141157519 + 2 NA Intergenic MLT2B3|LTR|ERVL 473627 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 243-381 chr6 39068261 39068468 + 2 NA intron (NR_136563, intron 5 of 13) MLT1A1-int|LTR|ERVL-MaLR -5950 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 274-415 chr9 119343565 119343722 + 2 NA intron (NM_014618, intron 1 of 7) intron (NM_014618, intron 1 of 7) 25792 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 342-125 chr12 132913473 132913782 + 2 NA Intergenic L1MEd|LINE|L1 25785 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 524-192 chr5 15311476 15311843 + 2 NA Intergenic Intergenic -45099 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 288-340 chr5 127806433 127806669 + 2 NA intron (NM_001317938, intron 5 of 6) L4_A_Mam|LINE|RTE-X 103162 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 397-63 chr12 43372505 43372762 + 2 NA intron (NM_025003, intron 36 of 38) L2a|LINE|L2 179570 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 201-220 chr6 78050726 78050868 + 2 NA Intergenic L1MD|LINE|L1 397758 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 290-184 chr18 56207274 56207530 + 2 NA Intergenic L2c|LINE|L2 -16140 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 614-124 chr8 3464324 3464699 + 2 NA intron (NM_033225, intron 12 of 69) intron (NM_033225, intron 12 of 69) -736060 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 694-17 chr10 75304505 75305184 + 2 NA intron (NR_038226, intron 2 of 3) Tigger13a|DNA|TcMar-Tigger 8461 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 468-269 chr5 150641721 150642016 + 2 NA intron (NM_001109974, intron 1 of 1) intron (NM_001109974, intron 1 of 1) 1208 NM_001109974 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 482-94 chr17 5782761 5783092 + 2 NA intron (NR_040000, intron 1 of 3) LTR78|LTR|ERV1 10692 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 210-56 chr12 22310678 22310832 + 2 NA intron (NM_003034, intron 1 of 4) intron (NM_003034, intron 1 of 4) 23959 NM_003034 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 256-63 chr11 37412665 37412862 + 2 NA Intergenic Intergenic -525838 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 506-273 chr8 5488777 5489145 + 2 NA Intergenic Intergenic -494047 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 663-48 chr18 47435452 47435881 + 2 NA intron (NR_147192, intron 1 of 2) L2c|LINE|L2 55170 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 266-405 chr8 15584007 15584267 + 2 NA intron (NM_001356429, intron 1 of 10) intron (NM_001356429, intron 1 of 10) 43874 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 373-399 chr8 50893038 50893390 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 729083 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 455-245 chr6 110572104 110572425 + 2 NA Intergenic L1M4a2|LINE|L1 -95651 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 225-182 chr20 48200029 48200185 + 2 NA Intergenic L2a|LINE|L2 -159804 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 365-89 chr12 14146226 14146488 + 2 NA Intergenic LTR33|LTR|ERVL -166001 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 234-305 chr5 28591495 28591675 + 2 NA Intergenic Intergenic -303920 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 378-64 chr10 85135295 85135517 + 2 NA Intergenic Intergenic 63499 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 368-289 chr3 46012014 46012202 + 2 NA Intergenic MIR3|SINE|MIR 15375 NM_001024644 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 322-21 chr1 106065828 106066001 + 2 NA Intergenic AluSc|SINE|Alu -37661 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 973-23 chr7 56443077 56443758 + 2 NA intron (NR_029420, intron 1 of 5) L1MA3|LINE|L1 4958 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 226-33 chr10 12418595 12418757 + 2 NA intron (NM_001351032, intron 3 of 11) L1ME4c|LINE|L1 29694 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 438-147 chr20 45677765 45678062 + 2 NA Intergenic L1MA7|LINE|L1 -7674 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 479-5 chr1 78182687 78182980 + 2 NA Intergenic MIRb|SINE|MIR -46766 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 435-171 chr4 72545069 72545489 + 2 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 23942 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 212-36 chr10 41835903 41836063 + 2 NA Intergenic ALR/Alpha|Satellite|centr 532062 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 323-49 chr10 36581698 36581926 + 2 NA Intergenic L1MC4|LINE|L1 -544045 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 272-485 chrUn_KI270757v1 15028 15229 + 2 NA NA (AATGG)n|Simple_repeat|Simple_repeat NA NA 181-169 chr9 18495530 18495666 + 2 NA intron (NM_052866, intron 1 of 12) intron (NM_052866, intron 1 of 12) 21445 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 457-73 chr15 43121658 43122062 + 2 NA Intergenic Intergenic -11255 NM_001347004 80021 Hs.511175 NM_024956 ENSG00000137842 TMEM62 - transmembrane protein 62 protein-coding 265-243 chr3 96055872 96056078 + 2 NA Intergenic Intergenic -303989 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 209-291 chr7 9143105 9143282 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -491077 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 241-314 chr5 141082367 141082546 + 2 NA Intergenic Intergenic -4425 NR_105056 101926905 Hs.570900 NR_105056 LOC101926905 - uncharacterized LOC101926905 ncRNA 309-138 chr14 26349361 26349556 + 2 NA Intergenic Intergenic 203972 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 302-369 chr6 18939154 18939407 + 2 NA Intergenic Intergenic 241200 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 494-190 chr3 154700348 154700694 + 2 NA Intergenic L1MB8|LINE|L1 -270331 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 263-156 chr17 68939263 68939482 + 2 NA intron (NM_001288985, intron 4 of 39) MLT1K|LTR|ERVL-MaLR 16020 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 252-19 chr1 161178429 161178620 + 2 NA promoter-TSS (NM_001199874) promoter-TSS (NM_001199874) -556 NM_001199873 8703 Hs.321231 NM_003779 ENSG00000158850 B4GALT3 beta4Gal-T3 beta-1,4-galactosyltransferase 3 protein-coding 162-104 chr5 17214429 17214550 + 2 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -2334 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 351-498 chr8 130872569 130872915 + 2 NA intron (NM_001115, intron 8 of 17) intron (NM_001115, intron 8 of 17) 168167 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 230-320 chr6 39470430 39470591 + 2 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -39120 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 227-247 chr4 39085149 39085292 + 2 NA intron (NM_199039, intron 3 of 9) intron (NM_199039, intron 3 of 9) 22988 NM_015990 51088 Hs.272251 NM_015990 ENSG00000109790 KLHL5 - kelch like family member 5 protein-coding 200-208 chr5 29924619 29924812 + 2 NA Intergenic Intergenic 44155 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 623-77 chr22 23216333 23216750 + 2 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) 36032 NM_004327 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 350-365 chr4 141480972 141481182 + 2 NA Intergenic L1MA4|LINE|L1 -148460 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 325-244 chr18 75591535 75591858 + 2 NA Intergenic L1MB5|LINE|L1 120707 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 478-264 chr7 40548524 40548870 + 2 NA intron (NM_001193312, intron 11 of 12) L1MC1|LINE|L1 413721 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 225-87 chr14 54105185 54105366 + 2 NA Intergenic Intergenic -148384 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 495-89 chr17 71538905 71539320 + 2 NA Intergenic Intergenic -336933 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 335-158 chr14 49572418 49572637 + 2 NA 3' UTR (NM_001030001, exon 3 of 3) 3' UTR (NM_001030001, exon 3 of 3) 13853 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 235-363 chr8 111683631 111683811 + 2 NA Intergenic L1MEc|LINE|L1 307082 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 274-104 chr12 120431580 120431821 + 2 NA Intergenic Intergenic -6413 NM_004373 1337 Hs.369624 NM_004373 ENSG00000111775 COX6A1 CMTRID|COX6A|COX6AL cytochrome c oxidase subunit 6A1 protein-coding 126-62 chr8 106418052 106418119 + 2 NA intron (NM_018002, intron 2 of 15) intron (NM_018002, intron 2 of 15) -29839 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 236-136 chr16 78214881 78215053 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 115313 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 229-255 chr3 100580653 100580809 + 2 NA Intergenic HAL1ME|LINE|L1 -28870 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 258-239 chr21 24221029 24221247 + 2 NA Intergenic Intergenic 100239 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 200-272 chr8 107933607 107933769 + 2 NA intron (NM_001282863, intron 4 of 4) intron (NM_001282863, intron 4 of 4) 148251 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 199-20 chr10 48513776 48513954 + 2 NA intron (NR_144642, intron 3 of 9) L1MB7|LINE|L1 -2276 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 239-380 chr7 70889548 70889731 + 2 NA Intergenic Intergenic -242505 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 635-84 chr4 157888891 157889389 + 2 NA Intergenic MIRb|SINE|MIR -281612 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 353-8 chr1 50311523 50311707 + 2 NA Intergenic LTR78B|LTR|ERV1 111828 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 413-207 chr4 26607966 26608248 + 2 NA intron (NM_001292054, intron 1 of 17) Charlie15b|DNA|hAT-Charlie 24023 NM_018317 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 510-36 chr10 130242813 130243245 + 2 NA Intergenic Intergenic 106620 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 636-42 chr14 39542010 39542467 + 2 NA Intergenic L1PREC2|LINE|L1 -109738 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 215-83 chr14 54676141 54676309 + 2 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -78608 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 351-430 chr6 163626965 163627256 + 2 NA Intergenic Intergenic 44374 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 434-160 chr2 191043538 191043842 + 2 NA intron (NM_003151, intron 14 of 23) L1ME3E|LINE|L1 22164 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 516-253 chr8 115130898 115131203 + 2 NA Intergenic Intergenic 536963 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 580-106 chr3 2849418 2849937 + 2 NA intron (NM_175607, intron 7 of 24) intron (NM_175607, intron 7 of 24) -42538 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 343-186 chr16 64919482 64919778 + 2 NA Intergenic L1ME4c|LINE|L1 202433 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 612-9 chr10 5173494 5173988 + 2 NA intron (NR_027916, intron 1 of 7) LTR25-int|LTR|ERV1 11446 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 158-102 chr6 119268204 119268350 + 2 NA intron (NM_005907, intron 5 of 12) L1MC5|LINE|L1 81484 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 407-118 chr18 7482016 7482421 + 2 NA Intergenic Intergenic -21212 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 313-195 chr17 6297210 6297425 + 2 NA Intergenic Intergenic 137804 NM_001285401 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 379-82 chr13 64658485 64658706 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -582584 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 395-179 chr2 139699683 139699964 + 2 NA Intergenic Intergenic 802499 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 250-265 chr3 1341602 1341746 + 2 NA intron (NM_001289080, intron 11 of 22) intron (NM_001289080, intron 11 of 22) 248650 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 641-98 chr6 163610362 163610995 + 2 NA Intergenic Intergenic 60806 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 383-238 chr22 44564996 44565300 + 2 NA Intergenic L1MEc|LINE|L1 -4192 NR_028411 388910 Hs.332685 NM_001012986 ENSG00000187012 LINC00207 NCRNA00207 long intergenic non-protein coding RNA 207 ncRNA 519-105 chr2 67987769 67988201 + 2 NA Intergenic Intergenic 75019 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 305-141 chr13 101328968 101329214 + 2 NA intron (NM_001350749, intron 7 of 43) intron (NM_001350749, intron 7 of 43) 87417 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 636-104 chr4 138826183 138826645 + 2 NA intron (NR_133945, intron 2 of 2) L1MC4|LINE|L1 186232 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 192-144 chr4 55535322 55535502 + 2 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 10520 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 407-4 chr1 68761922 68762211 + 2 NA Intergenic L1PB1|LINE|L1 -264984 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 362-343 chr5 34552484 34552741 + 2 NA Intergenic Intergenic -103716 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 323-97 chr11 111513225 111513391 + 2 NA promoter-TSS (NR_029840) promoter-TSS (NR_029840) -131 NR_029840 407042 NR_029840 ENSG00000207562 MIR34C MIRN34C|miRNA34C|mir-34c microRNA 34c ncRNA 298-499 chr9 73889789 73889942 + 2 NA Intergenic L1ME2z|LINE|L1 -481666 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 261-5 chr1 42024207 42024433 + 2 NA intron (NR_038261, intron 1 of 3) L1MEd|LINE|L1 11614 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 404-130 chr17 62869303 62869544 + 2 NA Intergenic AluSx3|SINE|Alu 60921 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 225-12 chr1 181967232 181967394 + 2 NA Intergenic L1MA6|LINE|L1 94399 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 464-28 chr10 128725623 128725908 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -187068 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 459-271 chr7 10369928 10370291 + 2 NA Intergenic L1PBa|LINE|L1 -332567 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 311-510 chr8 91211099 91211281 + 2 NA intron (NM_001282356, intron 1 of 19) intron (NM_001282356, intron 1 of 19) 1694 NM_001282357 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 319-555 chr8 133661857 133662083 + 2 NA Intergenic Intergenic 22096 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 156-78 chr5 3625874 3625977 + 2 NA Intergenic Intergenic 30093 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 405-214 chr3 189212008 189212275 + 2 NA intron (NM_198485, intron 2 of 5) intron (NM_198485, intron 2 of 5) 28453 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 315-433 chr6 166964785 166964977 + 2 NA Intergenic L1PA16|LINE|L1 -8331 NM_003730 8635 Hs.529989 NM_003730 ENSG00000026297 RNASET2 RNASE6PL|bA514O12.3 ribonuclease T2 protein-coding 341-425 chr5 21845309 21845556 + 2 NA intron (NM_001317228, intron 4 of 11) intron (NM_001317228, intron 4 of 11) -39022 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 284-366 chr7 4380836 4381043 + 2 NA Intergenic Intergenic -246102 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 334-500 chr7 53293400 53293679 + 2 NA Intergenic LTR49|LTR|ERV1 257906 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 244-164 chr2 71496873 71497041 + 2 NA intron (NM_001130985, intron 3 of 54) intron (NM_001130985, intron 3 of 54) 30258 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 213-187 chr3 177419336 177419531 + 2 NA Intergenic Intergenic -22488 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 603-164 chr8 99942131 99942590 + 2 NA Intergenic MER21-int|LTR|ERVL -48653 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 274-141 chr15 63352502 63352735 + 2 NA intron (NR_135511, intron 2 of 9) intron (NR_135511, intron 2 of 9) 29228 NM_001218 771 Hs.210995 NM_001218 ENSG00000074410 CA12 CA-XII|CAXII|HsT18816|T18816 carbonic anhydrase 12 protein-coding 378-272 chr3 8274937 8275181 + 2 NA intron (NR_033378, intron 3 of 3) AluJr|SINE|Alu 226599 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 241-199 chr2 139602980 139603173 + 2 NA Intergenic L1MC2|LINE|L1 705752 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 282-412 chr6 127086161 127086339 + 2 NA Intergenic Intergenic -32421 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 214-250 chr4 160035295 160035473 + 2 NA Intergenic Intergenic -257600 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 298-258 chr20 51793824 51794054 + 2 NA intron (NM_001318031, intron 1 of 3) intron (NM_001318031, intron 1 of 3) 8582 NM_020436 57167 Hs.517113 NM_020436 ENSG00000101115 SALL4 DRRS|HSAL4|ZNF797 spalt like transcription factor 4 protein-coding 311-353 chr3 147800245 147800424 + 2 NA Intergenic MLT2D|LTR|ERVL -277825 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 528-114 chr18 69181506 69181956 + 2 NA Intergenic Intergenic -219157 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 167-106 chr7 24012295 24012408 + 2 NA Intergenic L1MB1|LINE|L1 -271839 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 252-295 chr4 47589453 47589608 + 2 NA intron (NM_020453, intron 22 of 22) L1M5|LINE|L1 -63139 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 545-161 chr4 72607557 72607988 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -38551 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 467-64 chr12 50842223 50842508 + 2 NA promoter-TSS (NM_182559) promoter-TSS (NM_182559) -561 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 463-162 chr20 12625850 12626160 + 2 NA Intergenic L1MA9|LINE|L1 310958 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 342-478 chr7 14066614 14066809 + 2 NA Intergenic Intergenic -75286 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 219-291 chr5 97097492 97097633 + 2 NA intron (NM_153234, intron 4 of 5) L1ME4b|LINE|L1 45049 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 306-252 chr2 130721734 130721937 + 2 NA Intergenic AluJb|SINE|Alu -7235 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 459-20 chr1 212807567 212807912 + 2 NA exon (NM_001042553, exon 8 of 10) exon (NM_001042553, exon 8 of 10) 15845 NM_001146169 128387 Hs.530538 NM_001042552 ENSG00000203705 TATDN3 - TatD DNase domain containing 3 protein-coding 252-448 chr9 82636534 82636698 + 2 NA Intergenic L1MC2|LINE|L1 426526 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 169-27 chr12 40166578 40166715 + 2 NA intron (NR_146526, intron 1 of 1) L1M6|LINE|L1 10407 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 253-37 chr1 237223358 237223523 + 2 NA intron (NM_001035, intron 1 of 104) MLT1A1|LTR|ERVL-MaLR 181256 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 304-260 chr2 88143581 88143827 + 2 NA Intergenic L1MEc|LINE|L1 -15642 NM_001443 2168 Hs.380135 NM_001443 ENSG00000163586 FABP1 FABPL|L-FABP fatty acid binding protein 1 protein-coding 284-445 chr9 108393223 108393451 + 2 NA Intergenic LTR12C|LTR|ERV1 462649 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 335-246 chr2 61383797 61384077 + 2 NA intron (NM_014709, intron 5 of 79) intron (NM_014709, intron 5 of 79) 33440 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 385-192 chr2 171416157 171416528 + 2 NA intron (NM_001321157, intron 1 of 10) intron (NM_001321157, intron 1 of 10) 17648 NM_001321154 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 259-210 chr2 118978743 118978961 + 2 NA intron (NM_006770, intron 8 of 16) (TAGTAA)n|Simple_repeat|Simple_repeat 36683 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 153-90 chr7 12701760 12701841 + 2 NA Intergenic L1MEg|LINE|L1 14167 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 357-455 chr8 120869771 120870082 + 2 NA Intergenic L1ME3|LINE|L1 -57880 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 719-83 chr8 130423510 130424177 + 2 NA intron (NM_001362925, intron 1 of 29) L1ME4b|LINE|L1 19817 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 425-273 chr6 166294576 166294839 + 2 NA Intergenic AluJr|SINE|Alu 13685 NM_175922 285800 Hs.731862 NM_175922 ENSG00000176381 PRR18 - proline rich 18 protein-coding 326-39 chr1 183625484 183625715 + 2 NA 3' UTR (NM_001270439, exon 4 of 4) 3' UTR (NM_001270439, exon 4 of 4) 10184 NM_001270439 10092 Hs.518609 NM_005717 ENSG00000162704 ARPC5 ARC16|dJ127C7.3|p16-Arc actin related protein 2/3 complex subunit 5 protein-coding 279-151 chr18 78252296 78252522 + 2 NA Intergenic Intergenic -258682 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 296-29 chr1 248343083 248343322 + 2 NA Intergenic MER4D0|LTR|ERV1 -5573 NM_001001918 127066 Hs.553583 NM_001001918 ENSG00000177174 OR14C36 OR5BF1 olfactory receptor family 14 subfamily C member 36 protein-coding 320-9 chr1 50897451 50897740 + 2 NA intron (NM_007051, intron 1 of 18) intron (NM_007051, intron 1 of 18) 62672 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 257-201 chr2 104917253 104917410 + 2 NA Intergenic Intergenic -44736 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 212-327 chr8 114074513 114074667 + 2 NA Intergenic Intergenic -637651 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 440-216 chr6 64620869 64621144 + 2 NA intron (NM_001292009, intron 23 of 43) intron (NM_001292009, intron 23 of 43) -680412 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 241-254 chr3 185088983 185089176 + 2 NA intron (NM_001025266, intron 1 of 1) MER65D|LTR|ERV1 63981 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 250-374 chr6 63940256 63940442 + 2 NA intron (NM_001292009, intron 35 of 43) Tigger2|DNA|TcMar-Tigger 133513 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 453-145 chr20 61769423 61769709 + 2 NA intron (NM_001252339, intron 2 of 14) MIRb|SINE|MIR -49818 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 486-301 chr8 133523740 133524063 + 2 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 47986 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 538-107 chr2 41422846 41423352 + 2 NA Intergenic L1PB1|LINE|L1 -454456 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 317-485 chr8 88861776 88861936 + 2 NA Intergenic Intergenic -534373 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 273-130 chr14 51126905 51127089 + 2 NA Intergenic L1PB1|LINE|L1 -31293 NM_052978 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 351-383 chr5 56044634 56044953 + 2 NA Intergenic AluJr4|SINE|Alu 49626 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 361-467 chr8 137131060 137131286 + 2 NA Intergenic Intergenic 282415 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 609-143 chr8 131500837 131501270 + 2 NA Intergenic L1ME1|LINE|L1 -403040 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 468-260 chr5 107070651 107071083 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -59853 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 335-568 chr9 79603215 79603489 + 2 NA intron (NM_001282760, intron 5 of 20) Tigger1|DNA|TcMar-Tigger 30175 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 263-244 chr22 29633167 29633384 + 2 NA intron (NR_156186, intron 2 of 16) L2|LINE|L2 29642 NM_181829 4771 Hs.187898 NM_000268 ENSG00000186575 NF2 ACN|BANF|SCH neurofibromin 2 protein-coding 548-40 chr11 88410698 88411166 + 2 NA Intergenic L2c|LINE|L2 -73196 NM_001114173 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 280-181 chr2 4768859 4769131 + 2 NA Intergenic L1M4|LINE|L1 -112773 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 201-163 chr3 137422908 137423063 + 2 NA Intergenic L1M2|LINE|L1 -341330 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 384-129 chr15 97356590 97356924 + 2 NA Intergenic Intergenic 165054 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 548-24 chr10 64463011 64463347 + 2 NA Intergenic MIRb|SINE|MIR -362349 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 217-283 chr5 8226193 8226343 + 2 NA Intergenic Intergenic 231296 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 623-15 chr10 94095119 94095594 + 2 NA intron (NR_120616, intron 5 of 7) intron (NR_120616, intron 5 of 7) 6330 NM_001165979 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 300-263 chr3 1429869 1430146 + 2 NA Intergenic Intergenic 336983 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 234-173 chr2 80404842 80405036 + 2 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 91560 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 194-50 chr13 85922349 85922507 + 2 NA Intergenic Intergenic -123009 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 433-180 chr3 115555055 115555350 + 2 NA Intergenic Intergenic -68308 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 241-340 chr6 132412933 132413106 + 2 NA Intergenic Intergenic -11544 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 342-414 chr5 103556441 103556631 + 2 NA intron (NM_001300741, intron 3 of 6) intron (NM_001300741, intron 3 of 6) 6253 NM_031438 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 419-95 chr14 63272281 63272567 + 2 NA intron (NM_020663, intron 2 of 4) intron (NM_020663, intron 2 of 4) 46511 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 272-470 chr9 26242271 26242505 + 2 NA Intergenic Intergenic 175713 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 182-158 chr6 144203248 144203391 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 52802 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 210-254 chr7 1597912 1598075 + 2 NA Intergenic Intergenic -16477 NR_001288 260341 Hs.534596 NR_001288 TFAMP1 MTTF1|TCF6L1 transcription factor A, mitochondrial pseudogene 1 pseudo 429-116 chr17 9325366 9325724 + 2 NA intron (NM_004853, intron 7 of 7) MER45A|DNA|hAT-Tip100 -146427 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 349-28 chr1 117184965 117185226 + 2 NA intron (NM_024626, intron 1 of 5) intron (NM_024626, intron 1 of 5) 18741 NM_001253849 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 544-26 chr10 33390729 33391260 + 2 NA Intergenic Intergenic -56089 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 426-245 chr5 116886855 116887130 + 2 NA Intergenic Intergenic -124783 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 326-403 chr5 38697819 38698070 + 2 NA intron (NR_109951, intron 3 of 3) MIRc|SINE|MIR 22329 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 554-182 chr6 47386876 47387303 + 2 NA Intergenic L1MA3|LINE|L1 -77184 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 205-171 chr22 22345274 22345404 + 2 NA Intergenic Intergenic 47241 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 688-32 chr12 38489610 38490169 + 2 NA Intergenic Intergenic 173115 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 330-10 chr1 44893261 44893533 + 2 NA intron (NM_001166588, intron 6 of 9) (CATGTG)n|Simple_repeat|Simple_repeat -50144 NM_003738 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 353-474 chr7 10614528 10614715 + 2 NA intron (NR_147499, intron 1 of 2) L1M6|LINE|L1 -88055 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 307-165 chr15 90501401 90501610 + 2 NA 3' UTR (NM_003870, exon 38 of 38) 3' UTR (NM_003870, exon 38 of 38) -28418 NM_022769 64784 Hs.567572 NM_022769 ENSG00000140577 CRTC3 TORC-3|TORC3 CREB regulated transcription coactivator 3 protein-coding 351-52 chr10 118001850 118002061 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -44866 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 275-374 chr8 139587314 139587564 + 2 NA Intergenic MLT2C2|LTR|ERVL 115684 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 363-227 chr2 143661298 143661510 + 2 NA intron (NM_018460, intron 12 of 13) intron (NM_018460, intron 12 of 13) -275663 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 653-38 chr14 27195500 27196078 + 2 NA Intergenic Intergenic 287147 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 676-34 chr14 63937044 63937586 + 2 NA intron (NM_015180, intron 2 of 114) L2a|LINE|L2 84311 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 318-568 chr9 20585326 20585635 + 2 NA intron (NM_001286691, intron 2 of 10) L1MC2|LINE|L1 36458 NM_001286691 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3 super elongation complex subunit protein-coding 469-192 chr4 18392949 18393352 + 2 NA Intergenic Intergenic -371275 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 195-257 chr9 78288232 78288375 + 2 NA Intergenic Intergenic -8822 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 281-207 chr2 60069342 60069514 + 2 NA Intergenic Intergenic 313608 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 441-131 chr2 121844788 121845153 + 2 NA Intergenic L1MB8|LINE|L1 89319 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 260-389 chr6 146918029 146918183 + 2 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -114282 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 602-66 chr2 133205982 133206448 + 2 NA intron (NM_207481, intron 5 of 17) L1M5|LINE|L1 -59980 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 346-186 chr17 27389060 27389253 + 2 NA Intergenic Intergenic -28849 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 169-153 chr9 102278506 102278607 + 2 NA Intergenic Intergenic -241081 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 313-87 chr11 81099453 81099635 + 2 NA Intergenic L1ME4a|LINE|L1 -336741 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 357-281 chr3 123171952 123172184 + 2 NA Intergenic Intergenic 10274 NR_106960 102465667 NR_106960 ENSG00000284421 MIR7110 hsa-mir-7110 microRNA 7110 ncRNA 156-81 chr5 63944613 63944693 + 2 NA Intergenic L1ME4a|LINE|L1 17639 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 425-32 chr10 31054557 31054934 + 2 NA Intergenic AluJr|SINE|Alu -22808 NM_001143768 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 605-131 chr9 98595763 98596221 + 2 NA intron (NM_005458, intron 1 of 18) intron (NM_005458, intron 1 of 18) 112943 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 376-298 chr4 133384737 133385063 + 2 NA Intergenic L1PA16|LINE|L1 235606 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 217-212 chr21 34727849 34727998 + 2 NA intron (NR_024351, intron 4 of 5) MLT1E|LTR|ERVL-MaLR 9259 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 349-142 chr13 36690058 36690289 + 2 NA intron (NM_203451, intron 1 of 1) intron (NM_203451, intron 1 of 1) 16153 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 376-9 chr1 79754603 79754951 + 2 NA Intergenic Intergenic -748047 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 566-200 chr8 133605300 133605691 + 2 NA Intergenic AluY|SINE|Alu -33608 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 526-261 chr9 74219422 74219789 + 2 NA Intergenic MER65-int|LTR|ERV1 -151926 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 404-138 chr18 10952540 10952780 + 2 NA intron (NM_022068, intron 3 of 51) L1ME1|LINE|L1 -193011 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 558-192 chr6 143712541 143712878 + 2 NA intron (NM_001100165, intron 2 of 11) intron (NM_001100165, intron 2 of 11) 34744 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 449-83 chr14 84324247 84324537 + 2 NA Intergenic Intergenic -947540 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 241-50 chr10 104833082 104833271 + 2 NA intron (NM_014978, intron 1 of 26) ERVL-E-int|LTR|ERVL -166960 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 605-17 chr10 113910756 113911162 + 2 NA 3' UTR (NM_198514, exon 11 of 11) 3' UTR (NM_198514, exon 11 of 11) 56298 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 302-25 chr1 187545077 187545352 + 2 NA Intergenic L2b|LINE|L2 101586 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 440-108 chr19 34604609 34604884 + 2 NA intron (NR_027620, intron 1 of 3) L1ME3B|LINE|L1 -10161 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 541-132 chr2 213434754 213435136 + 2 NA intron (NR_047660, intron 8 of 14) L1PB4|LINE|L1 150481 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 246-351 chr6 72917976 72918149 + 2 NA intron (NM_001160132, intron 1 of 13) MER20|DNA|hAT-Charlie 49691 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 261-183 chr2 60093336 60093560 + 2 NA Intergenic Intergenic 289588 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 222-67 chr11 78362990 78363183 + 2 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) -21206 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 299-123 chr13 100566431 100566716 + 2 NA intron (NM_001195087, intron 2 of 2) intron (NM_001195087, intron 2 of 2) 22219 NM_001195087 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 259-249 chr3 60435568 60435756 + 2 NA intron (NM_001320900, intron 6 of 9) L1PA13|LINE|L1 182208 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 349-233 chr19 51955971 51956285 + 2 NA intron (NR_103847, intron 1 of 2) ERV24B_Prim-int|LTR|ERV1 6994 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 523-96 chr16 49264458 49264931 + 2 NA Intergenic L1PB1|LINE|L1 17144 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 429-14 chr1 117149479 117149763 + 2 NA intron (NM_024626, intron 4 of 5) intron (NM_024626, intron 4 of 5) -27872 NM_025188 80263 Hs.301526 NM_025188 ENSG00000134253 TRIM45 RNF99 tripartite motif containing 45 protein-coding 121-26 chr2 52503236 52503324 + 2 NA Intergenic Intergenic 132632 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 410-141 chr2 83810613 83810995 + 2 NA Intergenic Intergenic 287990 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 769-15 chr14 48563901 48564434 + 2 NA Intergenic MER51-int|LTR|ERV1 -769153 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 511-159 chr21 34766383 34766823 + 2 NA intron (NR_038885, intron 1 of 2) intron (NR_038885, intron 1 of 2) 20778 NR_038885 100506385 Hs.120179 NR_038885 ENSG00000234380 LINC01426 lincRNA-uc002yug.2 long intergenic non-protein coding RNA 1426 ncRNA 481-195 chr3 39784371 39784790 + 2 NA Intergenic MIR|SINE|MIR -24334 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 319-51 chr10 34761539 34761756 + 2 NA intron (NM_001184789, intron 1 of 22) intron (NM_001184789, intron 1 of 22) 53649 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 283-238 chr2 108043671 108043862 + 2 NA Intergenic L1MEf|LINE|L1 8989 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 427-270 chr8 132259100 132259497 + 2 NA intron (NM_004519, intron 1 of 14) L1M4|LINE|L1 -154033 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 427-191 chr4 103680301 103680715 + 2 NA intron (NM_001059, intron 1 of 4) (AT)n|Simple_repeat|Simple_repeat 39477 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 317-81 chr11 37746075 37746296 + 2 NA Intergenic Intergenic -192416 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 287-34 chr1 229094681 229094944 + 2 NA Intergenic Intergenic 79989 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 284-302 chr4 166157494 166157674 + 2 NA Intergenic Intergenic 284347 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 233-16 chr1 164727754 164727916 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 46806 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 236-41 chr10 51051879 51052061 + 2 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 16582 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 308-171 chr16 35443216 35443446 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 37265 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 221-25 chr1 213716049 213716198 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -208626 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 406-129 chr19 36827061 36827380 + 2 NA intron (NM_001242800, intron 1 of 4) LTR66|LTR|ERVL 10807 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 255-365 chr6 139784328 139784497 + 2 NA intron (NR_038399, intron 1 of 2) L1PA15|LINE|L1 13339 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 245-51 chr10 65222907 65223142 + 2 NA Intergenic L1MC|LINE|L1 -298506 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 288-148 chr16 60224467 60224694 + 2 NA Intergenic Intergenic 135213 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 314-193 chr15 76027097 76027285 + 2 NA Intergenic L1M2c|LINE|L1 -14767 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 397-282 chr6 105565696 105566003 + 2 NA Intergenic L1ME1|LINE|L1 -162767 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 770-26 chr16 65715251 65715845 + 2 NA Intergenic Intergenic -139248 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 345-389 chr4 91866476 91866760 + 2 NA Intergenic Intergenic 410684 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 331-294 chr2 167760058 167760253 + 2 NA Intergenic Intergenic -58517 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 415-49 chr11 97865817 97866219 + 2 NA Intergenic Intergenic -1154931 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 260-205 chr2 40015097 40015274 + 2 NA intron (NR_038441, intron 2 of 4) L1PA16|LINE|L1 97551 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 398-64 chr11 132082499 132082866 + 2 NA intron (NR_147849, intron 2 of 6) MER41-int|LTR|ERV1 171864 NM_001144059 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 317-433 chr6 157587622 157587864 + 2 NA intron (NM_024630, intron 2 of 8) intron (NM_024630, intron 2 of 8) 58611 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 396-6 chr1 57798775 57799089 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -61649 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 309-65 chr10 107083721 107083919 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 80886 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 217-12 chr1 105052267 105052410 + 2 NA Intergenic Intergenic 566597 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 341-367 chr4 28593504 28593806 + 2 NA Intergenic Intergenic -225927 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 168-129 chrX 81430329 81430461 + 2 NA Intergenic Intergenic 228293 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 567-149 chr5 124042347 124042876 + 2 NA Intergenic LTR1A2|LTR|ERV1 395909 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 732-5 chr1 188919841 188920336 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 1476460 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 223-104 chr15 78457063 78457223 + 2 NA intron (NM_001354994, intron 2 of 21) HAL1|LINE|L1 18722 NM_001320942 3658 Hs.436031 NM_004136 ENSG00000136381 IREB2 ACO3|IRE-BP 2|IRE-BP2|IRP2|IRP2AD|NDCAMA iron responsive element binding protein 2 protein-coding 415-31 chr10 81785365 81785668 + 2 NA Intergenic L1MA7|LINE|L1 -89678 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 322-514 chr8 36531361 36531559 + 2 NA Intergenic HERVL-int|LTR|ERVL -252914 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 793-41 chr5 21008465 21008902 + 2 NA Intergenic Intergenic -393148 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 299-156 chr16 20132677 20132854 + 2 NA Intergenic Intergenic -58987 NM_001002911 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 609-71 chr21 30653296 30653850 + 2 NA Intergenic Intergenic 10709 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 208-151 chr20 52600612 52600746 + 2 NA Intergenic Intergenic -20159 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 477-11 chr1 70759352 70759710 + 2 NA intron (NR_125938, intron 5 of 6) L1MEd|LINE|L1 53078 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 256-36 chr10 29758181 29758348 + 2 NA Intergenic Intergenic -21328 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 693-28 chr14 32029916 32030271 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 46606 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 322-519 chr8 64972784 64972977 + 2 NA Intergenic L1MA9|LINE|L1 -174143 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 190-151 chr5 129124438 129124611 + 2 NA Intergenic LTR40c|LTR|ERVL 26836 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 216-240 chr4 4499004 4499164 + 2 NA intron (NM_001346282, intron 1 of 10) intron (NM_001346282, intron 1 of 10) -17384 NR_126434 104472519 Hs.691848 NR_126434 ENSG00000248221 STX18-IT1 - STX18 intronic transcript 1 ncRNA 306-405 chr5 109522177 109522370 + 2 NA Intergenic Intergenic -112299 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 264-228 chr2 207391396 207391655 + 2 NA Intergenic Intergenic -122101 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 239-68 chr12 14121728 14121932 + 2 NA Intergenic L1MD1|LINE|L1 -141474 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 271-258 chr3 14801726 14801861 + 2 NA non-coding (NR_135245, exon 3 of 3) non-coding (NR_135245, exon 3 of 3) 9621 NR_135245 152274 Hs.434128 NR_135245 ENSG00000260902 LINC02011 - long intergenic non-protein coding RNA 2011 ncRNA 412-139 chr19 18205761 18206157 + 2 NA TTS (NR_134910) TTS (NR_134910) 1229 NR_134910 102725254 Hs.437211 NR_134910 ENSG00000268650 LOC102725254 - uncharacterized LOC102725254 ncRNA 355-27 chr1 229647293 229647513 + 2 NA intron (NM_014777, intron 6 of 9) intron (NM_014777, intron 6 of 9) 21156 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 496-4 chr1 21890793 21891200 + 2 NA intron (NM_005529, intron 3 of 96) intron (NM_005529, intron 3 of 96) 46314 NM_001291860 3339 Hs.562227 NM_005529 ENSG00000142798 HSPG2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 heparan sulfate proteoglycan 2 protein-coding 345-53 chr10 34272868 34273160 + 2 NA intron (NM_001184789, intron 19 of 22) L1MD1|LINE|L1 -500334 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 171-140 chr8 123691957 123692106 + 2 NA intron (NM_001003954, intron 9 of 11) L5|LINE|RTE-X -38230 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 161 chr1 16358137 16358246 + 2 NA Intergenic Intergenic -5711 NM_018994 54455 Hs.522384 NM_018994 ENSG00000037637 FBXO42 Fbx42|JFK F-box protein 42 protein-coding 325-392 chr4 58310080 58310370 + 2 NA Intergenic LTR1E|LTR|ERV1 226103 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 565-134 chr4 125642038 125642513 + 2 NA Intergenic Intergenic 135016 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 355-532 chr9 31817947 31818193 + 2 NA Intergenic Intergenic -436580 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 477-201 chr3 65134742 65135207 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -446974 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 262-454 chr9 82222637 82222823 + 2 NA Intergenic L1MB2|LINE|L1 233958 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 405-203 chr3 98348052 98348357 + 2 NA Intergenic L1MA4A|LINE|L1 -5650 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 584-55 chr17 73919456 73919856 + 2 NA Intergenic L1ME1|LINE|L1 -91119 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 195-209 chr5 180405610 180405764 + 2 NA Intergenic L1MA4|LINE|L1 -52351 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 312-409 chr5 31176374 31176644 + 2 NA Intergenic Intergenic -17177 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 298-497 chr9 69517888 69518074 + 2 NA intron (NM_001163, intron 1 of 12) MER103C|DNA|hAT-Charlie 154390 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 281-450 chr8 131666684 131666873 + 2 NA Intergenic L1PA16|LINE|L1 -237315 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 180-80 chr2 40731969 40732082 + 2 NA Intergenic L1ME1|LINE|L1 -219590 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 330-20 chr1 79660752 79660981 + 2 NA Intergenic Intergenic -654136 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 286-109 chr14 29848800 29849028 + 2 NA intron (NM_001330069, intron 1 of 18) L1PA16|LINE|L1 78182 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 599-83 chr3 62425087 62425550 + 2 NA intron (NM_003716, intron 28 of 29) MER20|DNA|hAT-Charlie -51768 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 298-147 chr15 86439205 86439464 + 2 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -122366 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 161-125 chr8 91186443 91186542 + 2 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -18993 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 119-59 chr8 65971081 65971168 + 2 NA Intergenic Intergenic -43854 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 568-84 chr18 4420504 4421036 + 2 NA intron (NM_001242761, intron 1 of 11) L2|LINE|L2 34496 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 574-95 chr20 42637653 42638163 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -47575 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 511-145 chr20 20381025 20381492 + 2 NA Intergenic Intergenic 13154 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 182-177 chr9 29758488 29758635 + 2 NA Intergenic Intergenic -544960 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 375-328 chr5 101212757 101212979 + 2 NA Intergenic L1M4|LINE|L1 -309586 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 148-96 chr8 136254861 136254981 + 2 NA Intergenic L3|LINE|CR1 -275877 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 333-124 chr12 127653369 127653591 + 2 NA intron (NR_134995, intron 1 of 3) THE1D|LTR|ERVL-MaLR 2108 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 398-312 chr7 5743826 5744218 + 2 NA intron (NM_207111, intron 3 of 16) L1MEg|LINE|L1 -32112 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 315-485 chr8 105141965 105142214 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -176349 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 299-300 chr3 161118655 161118835 + 2 NA Intergenic L1P3|LINE|L1 -13373 NM_001349159 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 354-120 chr13 69001056 69001337 + 2 NA Intergenic L1PA13|LINE|L1 -115871 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 669-18 chr12 21040235 21040630 + 2 NA intron (NM_001009562, intron 5 of 12) L1MA1|LINE|L1 24736 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 198-215 chr6 55794685 55794797 + 2 NA intron (NM_001329754, intron 2 of 5) LFSINE_Vert|SINE|tRNA 80849 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 546-156 chr3 169446481 169446966 + 2 NA intron (NM_001366473, intron 1 of 15) MIRb|SINE|MIR -1144 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 320-317 chr20 50158479 50158723 + 2 NA Intergenic AluSx|SINE|Alu -4803 NM_001162505 387521 Hs.744839 NM_199129 ENSG00000240849 TMEM189 KUA transmembrane protein 189 protein-coding 220-117 chr15 57014394 57014607 + 2 NA intron (NM_001322164, intron 3 of 19) HERVL40-int|LTR|ERVL 95055 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 304-284 chr2 186284379 186284632 + 2 NA Intergenic Intergenic -198188 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 634-48 chr13 35897715 35898255 + 2 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -42124 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 287-182 chr19 51783098 51783347 + 2 NA Intergenic Intergenic -11935 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 330-176 chr15 81989681 81989940 + 2 NA Intergenic Intergenic 56208 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 403-177 chr20 23501652 23501952 + 2 NA Intergenic Intergenic 10685 NM_005492 10047 Hs.121602 NM_005492 ENSG00000125815 CST8 CRES|CTES5 cystatin 8 protein-coding 345-401 chr5 2961703 2961909 + 2 NA Intergenic Intergenic 43952 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 312-60 chr10 111219557 111219821 + 2 NA Intergenic Intergenic 105398 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 286-419 chr7 49474100 49474258 + 2 NA Intergenic Intergenic -299459 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 358-244 chr2 205669090 205669281 + 2 NA Intergenic L1MA5|LINE|L1 -13315 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 188-171 chr5 142332984 142333160 + 2 NA intron (NR_120664, intron 1 of 3) intron (NR_120664, intron 1 of 3) 7779 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 221-60 chr12 24126096 24126258 + 2 NA intron (NM_152989, intron 4 of 17) L2|LINE|L2 -86244 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 179-25 chr14 45121936 45122065 + 2 NA intron (NM_002013, intron 3 of 6) intron (NM_002013, intron 3 of 6) 11125 NR_003691 100113389 Hs.712501 NR_003691 ENSG00000239043 SNORD127 - small nucleolar RNA, C/D box 127 snoRNA 272-473 chr9 35181716 35181874 + 2 NA intron (NM_006377, intron 1 of 38) AluSz|SINE|Alu 19786 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 326-361 chr3 189081980 189082271 + 2 NA Intergenic Intergenic -89846 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 219-110 chr15 42199075 42199286 + 2 NA TTS (NR_030357) TTS (NR_030357) 486 NR_030357 693212 NR_030357 ENSG00000207712 MIR627 MIRN627|hsa-mir-627|mir-627 microRNA 627 ncRNA 418-176 chr3 189349945 189350271 + 2 NA Intergenic Intergenic -109514 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 562-144 chr3 85640721 85641249 + 2 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) -85497 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 348-29 chr1 167890537 167890737 + 2 NA intron (NM_018417, intron 8 of 32) L1MA3|LINE|L1 23497 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 666-71 chr21 41980035 41980613 + 2 NA Intergenic Intergenic -26306 NM_015500 25966 Hs.473894 NM_015500 ENSG00000157617 C2CD2 C21orf25|C21orf258|TMEM24L C2 calcium dependent domain containing 2 protein-coding 342-165 chr15 87209894 87210136 + 2 NA Intergenic Intergenic -221589 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 479-213 chr6 54030608 54030950 + 2 NA intron (NM_001281746, intron 1 of 11) L1M5|LINE|L1 11809 NM_001281746 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 222-298 chr5 78386644 78386827 + 2 NA intron (NM_001290229, intron 1 of 7) L1PB1|LINE|L1 26118 NR_110885 9522 Hs.482587 NM_004866 ENSG00000085365 SCAMP1 SCAMP|SCAMP37 secretory carrier membrane protein 1 protein-coding 216-284 chr5 102738209 102738392 + 2 NA Intergenic L1MD1|LINE|L1 -16483 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 346-18 chr1 116312907 116313198 + 2 NA Intergenic Intergenic -60192 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 239-438 chr9 99616611 99616783 + 2 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 203192 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 214-238 chr4 71834886 71835031 + 2 NA Intergenic L1ME1|LINE|L1 -29438 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 688-19 chr11 12397192 12397558 + 2 NA intron (NM_018222, intron 1 of 12) L1ME4b|LINE|L1 19804 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 399-342 chrX 100088108 100088433 + 2 NA Intergenic L1ME3A|LINE|L1 322003 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 408-224 chr4 26392660 26392981 + 2 NA intron (NM_203284, intron 3 of 11) L1ME1|LINE|L1 71592 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 212-54 chr10 131361234 131361376 + 2 NA Intergenic Intergenic -49584 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 314-31 chr1 163948733 163948998 + 2 NA Intergenic Intergenic -525674 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 312-562 chrX 88768194 88768435 + 2 NA Intergenic L1MB7|LINE|L1 21089 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 205-260 chr7 49798054 49798234 + 2 NA intron (NR_136188, intron 1 of 3) intron (NR_136188, intron 1 of 3) 22811 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 317-388 chr5 59737156 59737459 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 31541 NM_001364603 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 341-56 chr10 23391670 23391996 + 2 NA Intergenic AluJb|SINE|Alu -47036 NM_001351306 256815 Hs.132442 NM_153714 ENSG00000179133 C10orf67 C10orf115|LINC01552 chromosome 10 open reading frame 67 protein-coding 271-152 chr15 92583462 92583613 + 2 NA Intergenic Intergenic -11274 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 265-125 chr15 94608569 94608745 + 2 NA Intergenic MLT2B1|LTR|ERVL -246706 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 336-212 chr17 52991873 52992049 + 2 NA Intergenic Intergenic 6456 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 387-251 chr4 66944506 66944859 + 2 NA Intergenic L2|LINE|L2 477318 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 438-230 chr5 150860974 150861238 + 2 NA intron (NM_001346557, intron 2 of 3) MLT1G|LTR|ERVL-MaLR 14583 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 187-19 chr1 246794877 246795032 + 2 NA Intergenic Intergenic 5337 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 391-94 chr14 28980727 28981033 + 2 NA Intergenic L1PREC2|LINE|L1 -195093 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 241 chr1 1411642 1411788 + 2 NA Intergenic Intergenic -4422 NM_001318485 55052 Hs.182698 NM_017971 ENSG00000242485 MRPL20 L20mt|MRP-L20 mitochondrial ribosomal protein L20 protein-coding 282-183 chr19 19938080 19938260 + 2 NA Intergenic Intergenic 37224 NM_031218 81931 Hs.301059 NM_031218 ENSG00000184635 ZNF93 HPF34|HTF34|TF34|ZNF505 zinc finger protein 93 protein-coding 408-176 chr2 211623111 211623433 + 2 NA intron (NM_001042599, intron 18 of 26) intron (NM_001042599, intron 18 of 26) 803088 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 285-298 chr4 18985517 18985714 + 2 NA Intergenic Intergenic -963740 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 368-145 chr14 64045945 64046247 + 2 NA intron (NM_015180, intron 45 of 114) intron (NM_015180, intron 45 of 114) 49029 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 572-6 chr1 104212968 104213505 + 2 NA Intergenic LTR40a|LTR|ERVL 140213 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 455-264 chr8 236606 236989 + 2 NA intron (NM_001287254, intron 1 of 5) intron (NM_001287254, intron 1 of 5) 4341 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 396-214 chr3 44301365 44301567 + 2 NA intron (NM_001145030, intron 12 of 19) L1MC4|LINE|L1 -36653 NM_001029840 285343 Hs.55131 NM_173826 ENSG00000179152 TCAIM C3orf23|TOAG-1|TOAG1 T cell activation inhibitor, mitochondrial protein-coding 330-344 chr3 44518852 44519096 + 2 NA Intergenic Intergenic -8357 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 325-209 chr16 83750927 83751233 + 2 NA intron (NM_001220489, intron 10 of 12) intron (NM_001220489, intron 10 of 12) 52896 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 308-84 chr11 79802335 79802578 + 2 NA Intergenic Intergenic -361426 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 423-97 chr17 54077252 54077528 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 254463 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 422-20 chr1 234945495 234945880 + 2 NA Intergenic Intergenic 18312 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 513-81 chr14 84221824 84222206 + 2 NA Intergenic Intergenic -1049917 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 858-11 chr11 99600959 99601476 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 45072 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 268-217 chr2 224761780 224761925 + 2 NA Intergenic Intergenic -176455 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 721-13 chr12 118881453 118881881 + 2 NA Intergenic L1MB7|LINE|L1 -48131 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 252-70 chr11 74800154 74800324 + 2 NA intron (NM_001098638, intron 2 of 5) intron (NM_001098638, intron 2 of 5) 51390 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 287-175 chr18 64724021 64724195 + 2 NA Intergenic Intergenic -464053 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 216-225 chr3 86929244 86929405 + 2 NA Intergenic LTR33A_|LTR|ERVL 61825 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 362-161 chr14 87767015 87767318 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -111872 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 264-400 chr8 26820096 26820325 + 2 NA intron (NM_001322504, intron 1 of 1) L1M4|LINE|L1 45445 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 344-141 chr14 72327498 72327682 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -189230 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 196-259 chr8 127727647 127727778 + 2 NA intron (NR_117102, intron 1 of 3) intron (NR_117102, intron 1 of 3) 6255 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 237-406 chr9 37194201 37194395 + 2 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 73700 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 503-216 chr4 67954409 67954701 + 2 NA intron (NM_001114387, intron 1 of 9) intron (NM_001114387, intron 1 of 9) 8938 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 1058-9 chr14 79370944 79371916 + 2 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 92050 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 127-61 chr4 73435283 73435373 + 2 NA promoter-TSS (NM_001134) promoter-TSS (NM_001134) -893 NM_001134 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 496-6 chr1 37277030 37277363 + 2 NA Intergenic MIR|SINE|MIR 115633 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 305-305 chr20 16940726 16940926 + 2 NA Intergenic LTR49|LTR|ERV1 192473 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 416-138 chr17 32748132 32748522 + 2 NA intron (NM_015194, intron 12 of 21) L2c|LINE|L2 128797 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 396-143 chr19 29932051 29932390 + 2 NA intron (NM_001252641, intron 1 of 10) L1M4|LINE|L1 8563 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 217-227 chr3 86261329 86261490 + 2 NA Intergenic Intergenic -220534 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 278-97 chr13 96251948 96252185 + 2 NA intron (NM_153456, intron 1 of 1) L1M3c|LINE|L1 161227 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 196-148 chr20 2011535 2011714 + 2 NA Intergenic L1ME1|LINE|L1 -17339 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 453-200 chr5 24281516 24281956 + 2 NA Intergenic Intergenic 330388 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 352-377 chr4 93553830 93554152 + 2 NA intron (NM_001286838, intron 12 of 14) L3|LINE|CR1 -274762 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 622-95 chr4 46047598 46047949 + 2 NA intron (NM_173536, intron 8 of 8) intron (NM_173536, intron 8 of 8) 76281 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 293-384 chr6 164896056 164896342 + 2 NA Intergenic Intergenic -74136 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 557 chr1 33288807 33289190 + 2 NA intron (NM_001370212, intron 5 of 7) intron (NM_001370212, intron 5 of 7) 19305 NM_001370212 149076 Hs.743358 NM_152493 ENSG00000160094 ZNF362 RN|lin-29 zinc finger protein 362 protein-coding 322-169 chr15 33567828 33568139 + 2 NA intron (NM_001243996, intron 12 of 102) MER5B|DNA|hAT-Charlie 257016 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 317-357 chr4 79154074 79154277 + 2 NA intron (NR_038342, intron 3 of 5) L2c|LINE|L2 171886 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 347-478 chr7 85243882 85244197 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -122108 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 214-118 chr16 52511655 52511835 + 2 NA intron (NM_001080430, intron 1 of 6) intron (NM_001080430, intron 1 of 6) 35398 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 294-167 chr17 69008604 69008758 + 2 NA intron (NM_080283, intron 23 of 38) intron (NM_080283, intron 23 of 38) 3967 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 400-127 chr17 51734266 51734552 + 2 NA intron (NM_001082533, intron 5 of 9) MIR3|SINE|MIR 298982 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 1046 chr10 34034299 34035024 + 2 NA Intergenic Intergenic -261981 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 250-90 chr12 41410992 41411174 + 2 NA intron (NM_001164595, intron 3 of 9) AluJb|SINE|Alu -26656 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 532-274 chr8 82624242 82624597 + 2 NA Intergenic L1MA7|LINE|L1 -287685 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 229-244 chr3 13765547 13765732 + 2 NA Intergenic AluSq2|SINE|Alu 114432 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 385-354 chr7 39401747 39402118 + 2 NA intron (NM_001370959, intron 5 of 9) intron (NM_001370959, intron 5 of 9) 4414 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 250-256 chr21 32183061 32183232 + 2 NA Intergenic Intergenic 95903 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 128-87 chr9 115238219 115238327 + 2 NA intron (NR_163556, intron 2 of 7) MIRb|SINE|MIR 96455 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 400-45 chr11 8675571 8675903 + 2 NA Intergenic AluSc5|SINE|Alu -7055 NM_000990 6157 Hs.523463 NM_000990 ENSG00000166441 RPL27A L27A ribosomal protein L27a protein-coding 387-180 chr2 118503977 118504355 + 2 NA Intergenic LTR40b|LTR|ERVL 98800 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 270-227 chr22 47978126 47978276 + 2 NA Intergenic L1ME3A|LINE|L1 -296163 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 481-94 chr14 89470748 89471044 + 2 NA intron (NM_001085471, intron 1 of 6) intron (NM_001085471, intron 1 of 6) 53542 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 270-5 chr1 35696961 35697145 + 2 NA Intergenic Intergenic 19858 NM_001348691 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 215-268 chr5 158704010 158704172 + 2 NA intron (NM_001324107, intron 15 of 15) MIR|SINE|MIR -294318 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 230-220 chr22 16843887 16844048 + 2 NA Intergenic L1P3|LINE|L1 16493 NR_003607 27437 Hs.143955 NR_003607 ENSG00000229027 HSFY1P1 CECR8|HSFYL1|HSFYP1|NCRNA00016 HSFY1 pseudogene 1 pseudo 336-504 chr7 4366480 4366713 + 2 NA Intergenic Intergenic -231759 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 319-422 chr5 107395561 107395846 + 2 NA intron (NM_001962, intron 2 of 4) intron (NM_001962, intron 2 of 4) 275234 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 343-179 chr16 48487907 48488102 + 2 NA Intergenic Intergenic -102591 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 175-142 chr6 39790146 39790241 + 2 NA Intergenic Intergenic -2183 NM_001201427 23500 Hs.357128 NM_015345 ENSG00000146122 DAAM2 dJ90A20A.1 dishevelled associated activator of morphogenesis 2 protein-coding 338-84 chr10 112245100 112245324 + 2 NA Intergenic LTR16E1|LTR|ERVL -38188 NM_058222 6975 Hs.345485 NM_058222 ENSG00000119913 TECTB - tectorin beta protein-coding 448-103 chr19 43329459 43329793 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -19430 NR_026881 23574 Hs.721578 NR_026881 PRG1 - p53-responsive gene 1 ncRNA 316-172 chr14 66025881 66026083 + 2 NA Intergenic Intergenic -460389 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 131-74 chr8 30524753 30524850 + 2 NA intron (NM_001008710, intron 5 of 8) intron (NM_001008710, intron 5 of 8) -113779 NM_001206847 100507341 Hs.659493 NM_001206847 ENSG00000253457 SMIM18 - small integral membrane protein 18 protein-coding 395-345 chr8 131245901 131246197 + 2 NA Intergenic Intergenic -205140 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 592-157 chr6 147152474 147152992 + 2 NA intron (NR_034115, intron 3 of 10) L2c|LINE|L2 -6192 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 465 chr1 4190452 4190785 + 2 NA Intergenic L1MC1|LINE|L1 -221433 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 225-10 chr1 166382575 166382760 + 2 NA Intergenic Intergenic 107372 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 446-261 chr6 7205787 7206109 + 2 NA intron (NM_001003699, intron 6 of 12) intron (NM_001003699, intron 6 of 12) 97987 NM_001003700 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 240-255 chr20 7253597 7253769 + 2 NA intron (NR_110609, intron 1 of 7) intron (NR_110609, intron 1 of 7) 519 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 321-12 chr1 74863207 74863405 + 2 NA Intergenic L1PREC2|LINE|L1 -129898 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 485-279 chr8 25030844 25031223 + 2 NA Intergenic FLAM_A|SINE|Alu -74164 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 296-213 chr2 33784915 33785128 + 2 NA intron (NR_126403, intron 1 of 5) L2c|LINE|L2 -56804 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 304-271 chr2 123496970 123497126 + 2 NA Intergenic HERVL-int|LTR|ERVL -423567 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 284-432 chr9 26428876 26429050 + 2 NA Intergenic L1PB1|LINE|L1 362288 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 349-325 chr3 34354021 34354205 + 2 NA Intergenic L1ME3D|LINE|L1 555483 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 387-258 chr4 123504669 123504875 + 2 NA Intergenic Intergenic 105232 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 435-110 chr18 66338610 66338938 + 2 NA Intergenic Intergenic 265316 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 556-224 chr8 87048837 87049236 + 2 NA intron (NM_173538, intron 4 of 10) HUERS-P3-int|LTR|ERV1 182621 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 317-378 chr5 21205844 21206021 + 2 NA Intergenic Intergenic -253548 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 114-18 chr14 96830558 96830644 + 2 NA intron (NM_003384, intron 1 of 12) HAL1M8|LINE|L1 33219 NM_003384 7443 Hs.422662 NM_003384 ENSG00000100749 VRK1 PCH1|PCH1A VRK serine/threonine kinase 1 protein-coding 536-160 chr3 37463711 37464241 + 2 NA intron (NM_002207, intron 1 of 27) MER65A|LTR|ERV1 11835 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 640-127 chr7 111884006 111884368 + 2 NA intron (NM_001363540, intron 16 of 52) intron (NM_001363540, intron 16 of 52) 75682 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 332-230 chr19 36389321 36389604 + 2 NA 3' UTR (NM_133466, exon 5 of 5) 3' UTR (NM_133466, exon 5 of 5) -10261 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 148-90 chr7 93073915 93074016 + 2 NA Intergenic L1MA5|LINE|L1 44014 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 333-593 chr8 136468361 136468644 + 2 NA Intergenic Intergenic -62296 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 176-14 chr10 127474941 127475091 + 2 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR -74333 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 392-187 chr22 26623868 26624120 + 2 NA intron (NM_001886, intron 3 of 5) MER3|DNA|hAT-Charlie 2031 NM_001886 1413 Hs.57690 NM_001886 ENSG00000196431 CRYBA4 CTRCT23|CYRBA4|MCOPCT4 crystallin beta A4 protein-coding 351-322 chr3 178092858 178093059 + 2 NA Intergenic L1PA13|LINE|L1 276093 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 339-137 chr12 119322949 119323182 + 2 NA Intergenic L1MEc|LINE|L1 -11664 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 277-114 chr14 50871698 50871918 + 2 NA promoter-TSS (NM_181533) promoter-TSS (NM_181533) -245 NM_001206673 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 659-14 chr11 20717671 20718210 + 2 NA intron (NM_201551, intron 2 of 18) L3|LINE|CR1 48354 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 202-217 chr5 161088499 161088669 + 2 NA Intergenic Intergenic -149958 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 223-86 chr14 56101445 56101664 + 2 NA Intergenic Intergenic -16857 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 319-86 chr11 27094306 27094534 + 2 NA intron (NM_003986, intron 5 of 8) MER102a|DNA|hAT-Charlie 53605 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 330-216 chr17_KI270729v1_random 23128 23305 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 827-56 chr8 120767025 120767503 + 2 NA intron (NR_125419, intron 2 of 4) intron (NR_125419, intron 2 of 4) 6011 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 251-309 chr5 98248889 98249063 + 2 NA Intergenic L2a|LINE|L2 -87737 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 266-87 chr12 33129401 33129555 + 2 NA Intergenic Intergenic -232632 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 318-66 chr10 58882335 58882651 + 2 NA Intergenic L1MA5|LINE|L1 -117025 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 394-158 chr2 34085820 34086107 + 2 NA intron (NR_126403, intron 4 of 5) L1MA8|LINE|L1 18737 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 297-421 chr6 158907016 158907193 + 2 NA intron (NR_160979, intron 2 of 2) LTR24B|LTR|ERV1 18627 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 381-251 chr3 71592004 71592265 + 2 NA Intergenic Intergenic -8145 NM_001244810 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 420-233 chr5 73185842 73186161 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 12808 NM_153217 134288 Hs.508588 NM_153217 ENSG00000164325 TMEM174 - transmembrane protein 174 protein-coding 231-8 chr1 52120646 52120817 + 2 NA Intergenic L2a|LINE|L2 -21358 NM_007324 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 466-22 chr1 243997418 243997719 + 2 NA intron (NR_033883, intron 2 of 11) intron (NR_033883, intron 2 of 11) -51371 NM_001278196 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 248-127 chr15 56842356 56842529 + 2 NA Intergenic L1MEd|LINE|L1 -75648 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 376-392 chr8 3568867 3569069 + 2 NA intron (NM_033225, intron 10 of 69) Helitron1Na_Mam|RC|Helitron -840517 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 247-254 chr3 30262039 30262187 + 2 NA Intergenic MER57B2|LTR|ERV1 -256755 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 330-553 chr9 71860522 71860818 + 2 NA Intergenic Intergenic 50575 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 473-94 chr15 36750681 36750963 + 2 NA intron (NM_032499, intron 11 of 11) intron (NM_032499, intron 11 of 11) 67684 NR_027320 161635 Hs.659822 NR_027320 CSNK1A1P1 CSNK1A1P casein kinase 1 alpha 1 pseudogene 1 pseudo 299-263 chr21 26487638 26487846 + 2 NA intron (NM_052954, intron 2 of 3) intron (NM_052954, intron 2 of 3) 81799 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 295-509 chrX 10519105 10519396 + 2 NA intron (NM_001193281, intron 2 of 2) intron (NM_001193281, intron 2 of 2) 48353 NM_001193281 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 280-261 chr3 94884376 94884556 + 2 NA Intergenic Intergenic -53797 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 219-352 chr8 50136758 50136944 + 2 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) -27280 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 218-84 chr13 77764868 77765054 + 2 NA TTS (NM_001242870) TTS (NM_001242870) 23742 NM_001242870 122060 Hs.349955 NM_144595 ENSG00000139737 SLAIN1 C13orf32 SLAIN motif family member 1 protein-coding 358-83 chr11 130888331 130888671 + 2 NA intron (NM_014758, intron 8 of 10) L3|LINE|CR1 -18254 NR_125382 103611081 Hs.430300 NR_125382 ENSG00000255455 LOC103611081 - uncharacterized LOC103611081 ncRNA 508-258 chr9 69879229 69879585 + 2 NA intron (NM_001308084, intron 4 of 4) LTR51|LTR|ERV1 58590 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 492-182 chr4 12938697 12939054 + 2 NA Intergenic L1ME3F|LINE|L1 545465 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 458-120 chr2 20023416 20023738 + 2 NA Intergenic L1ME4a|LINE|L1 -10909 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 263-345 chr5 170158150 170158330 + 2 NA Intergenic L1MC|LINE|L1 40901 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 134-12 chr10 64451114 64451234 + 2 NA Intergenic MIRb|SINE|MIR -374354 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 181-19 chr10 74488447 74488600 + 2 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 40801 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 370-337 chr4 43445174 43445400 + 2 NA Intergenic Intergenic 47256 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 286-102 chr13 31699376 31699598 + 2 NA Intergenic Intergenic -40039 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 465-202 chr4 63515773 63516142 + 2 NA Intergenic L1MCa|LINE|L1 893493 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 373-202 chr2 115246975 115247227 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -62136 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 370-423 chr7 79159020 79159231 + 2 NA intron (NM_001301128, intron 1 of 20) MER4B-int|LTR|ERV1 150137 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 174-147 chr8 124407690 124407814 + 2 NA Intergenic L2b|LINE|L2 -35053 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 263-7 chr1 69432317 69432468 + 2 NA promoter-TSS (NR_147164) promoter-TSS (NR_147164) -863 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 466-239 chr7 7266863 7267189 + 2 NA intron (NR_108073, intron 2 of 3) MER41B|LTR|ERV1 11872 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 292-459 chr9 29575968 29576251 + 2 NA Intergenic Intergenic -362508 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 508-48 chr12 65343676 65344044 + 2 NA intron (NM_001031679, intron 4 of 6) intron (NM_001031679, intron 4 of 6) 64873 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 610-102 chr21 26311509 26311979 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -81891 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 501-202 chr5 4833123 4833592 + 2 NA Intergenic Intergenic 59876 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 154-57 chr20 22641546 22641669 + 2 NA Intergenic L2a|LINE|L2 -34090 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 243-219 chr2 103329989 103330175 + 2 NA Intergenic L1MCb|LINE|L1 -345653 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 339-172 chr15 25954415 25954629 + 2 NA intron (NR_040082, intron 1 of 4) intron (NR_040082, intron 1 of 4) 52162 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 161-76 chr4 84693292 84693415 + 2 NA intron (NM_014991, intron 58 of 67) intron (NM_014991, intron 58 of 67) 110226 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 324-458 chr6 46047715 46047999 + 2 NA intron (NM_001370649, intron 1 of 5) Arthur1B|DNA|hAT-Tip100 -31968 NM_001256023 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 400-269 chr4 181348806 181349142 + 2 NA Intergenic Intergenic -83945 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 564-90 chr2 11913496 11913903 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -76713 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 475-207 chr4 54716664 54717121 + 2 NA intron (NM_000222, intron 7 of 20) intron (NM_000222, intron 7 of 20) 58964 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 264-328 chr5 80942675 80942853 + 2 NA Intergenic L1MEc|LINE|L1 -17599 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 144 chr1 52542635 52542724 + 2 NA intron (NM_001009881, intron 1 of 29) L1MB3|LINE|L1 10411 NM_015269 23318 Hs.655407 NM_015269 ENSG00000134744 TUT4 PAPD3|TENT3A|ZCCHC11 terminal uridylyl transferase 4 protein-coding 382-263 chr3 63663093 63663315 + 2 NA intron (NM_001080537, intron 3 of 3) MIR|SINE|MIR 10529 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 319-27 chr1 167634320 167634502 + 2 NA intron (NM_001322923, intron 1 of 5) intron (NM_001322923, intron 1 of 5) 4179 NM_052862 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 416-164 chr2 43120753 43121029 + 2 NA Intergenic Intergenic -18446 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 303-84 chr12 13521730 13522020 + 2 NA Intergenic MIR|SINE|MIR -145130 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 303-383 chr5 162235722 162235887 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 168162 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 181-62 chr2 21639069 21639198 + 2 NA Intergenic L2c|LINE|L2 71519 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 483-167 chr3 67739470 67739848 + 2 NA intron (NR_109992, intron 3 of 6) L1ME3A|LINE|L1 84962 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 457-51 chr12 88745791 88746136 + 2 NA Intergenic Intergenic -165490 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 340-69 chr11 20816498 20816691 + 2 NA intron (NM_001288714, intron 3 of 18) L1PA16|LINE|L1 147008 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 346-486 chr8 82832686 82833000 + 2 NA Intergenic Intergenic -79261 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 343-482 chr6 125570113 125570297 + 2 NA Intergenic Intergenic -104148 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 462-100 chr16 25641728 25642127 + 2 NA Intergenic Intergenic -50032 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 191-161 chr5 4031590 4031740 + 2 NA Intergenic LTR75_1|LTR|ERV1 435833 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 271-231 chr20 40185527 40185686 + 2 NA Intergenic L1ME1|LINE|L1 181145 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 478-295 chr8 105595574 105595956 + 2 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 276222 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 222-304 chr5 106355646 106355783 + 2 NA Intergenic L1MC1|LINE|L1 655300 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 348-170 chr16 57860675 57860939 + 2 NA Intergenic AluJb|SINE|Alu 50170 NM_001278081 388282 Hs.434720 NM_001278081 LOC388282 - uncharacterized LOC388282 protein-coding 209-46 chr10 100413864 100414010 + 2 NA Intergenic FLAM_C|SINE|Alu 40361 NR_026762 90271 Hs.628088 NR_026762 ENSG00000235823 OLMALINC C10orf75|HI-LNC80|LINC00263|NCRNA00263|OLMALINCAS oligodendrocyte maturation-associated long intergenic non-coding RNA ncRNA 346-397 chr5 102042507 102042728 + 2 NA Intergenic Intergenic 253667 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 487-172 chr22 32770658 32771057 + 2 NA intron (NM_003490, intron 6 of 13) MIR|SINE|MIR -29959 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 632-96 chr5 56633409 56633974 + 2 NA Intergenic AluSc5|SINE|Alu -27435 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 305-29 chr1 115855220 115855384 + 2 NA Intergenic L1MA4|LINE|L1 -14176 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 678-82 chr4 117448601 117449210 + 2 NA intron (NR_125757, intron 2 of 3) LTR33A|LTR|ERVL 20507 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 196-187 chr4 72408507 72408681 + 2 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 160627 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 327-544 chrX 101997983 101998225 + 2 NA Intergenic L1MEd|LINE|L1 -66077 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 575-169 chr6 61781817 61782364 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 207960 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 321-612 chrX 53899495 53899793 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 143503 NM_001184898 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 243-485 chrX 38943291 38943493 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -139509 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 280-187 chr2 22536266 22536461 + 2 NA promoter-TSS (NR_110577) promoter-TSS (NR_110577) -116 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 317-187 chr17 53239669 53239883 + 2 NA Intergenic L1MEg|LINE|L1 254271 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 165-53 chr2 106757761 106757909 + 2 NA Intergenic Intergenic 128193 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 129-53 chr21 30438932 30439009 + 2 NA Intergenic Intergenic -1309 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 260-274 chr3 86196716 86196909 + 2 NA Intergenic Intergenic -285131 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 298-227 chr2 122968865 122969108 + 2 NA Intergenic Intergenic 104495 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 363-208 chr2 53296070 53296287 + 2 NA Intergenic L1MA2|LINE|L1 -471605 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 224-56 chr11 116213150 116213364 + 2 NA Intergenic Intergenic -426165 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 479-160 chr4 57675549 57675918 + 2 NA Intergenic Intergenic 249861 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 269-53 chr10 111871670 111871837 + 2 NA Intergenic Intergenic 312012 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 191-61 chr15 77341954 77342053 + 2 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 78101 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 435-241 chr8 87823168 87823548 + 2 NA Intergenic MER92-int|LTR|ERV1 50657 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 605-92 chr5 53278043 53278494 + 2 NA Intergenic Intergenic 168426 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 287-357 chr6 87951661 87951908 + 2 NA Intergenic Intergenic -96057 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 229-17 chr1 167090668 167090854 + 2 NA promoter-TSS (NM_005814) promoter-TSS (NM_005814) -384 NM_005814 10223 Hs.651244 NM_005814 ENSG00000143167 GPA33 A33 glycoprotein A33 protein-coding 237-319 chr6 5977714 5977934 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 26220 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 518-201 chr4 59570601 59570935 + 2 NA Intergenic Intergenic 557195 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 232-70 chr12 17071175 17071393 + 2 NA Intergenic L1MEd|LINE|L1 82537 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 332-463 chr6 159542844 159543023 + 2 NA Intergenic Intergenic 150308 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 187-32 chr11 101589912 101590036 + 2 NA Intergenic L1M3|LINE|L1 -5967 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 272-325 chr5 4790677 4790876 + 2 NA Intergenic L1MC2|LINE|L1 17295 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 357-451 chr8 113479467 113479797 + 2 NA Intergenic LOR1-int|LTR|ERV1 -42693 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 314-266 chr2 21416356 21416530 + 2 NA Intergenic Intergenic 292457 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 531-254 chr8 135252322 135252716 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 18388 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 214-171 chr2 157001020 157001189 + 2 NA Intergenic L2a|LINE|L2 -256601 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 233-329 chr6 40301547 40301727 + 2 NA Intergenic Intergenic 54369 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 552-20 chr10 76353713 76354092 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -534142 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 248-335 chr6 9895381 9895606 + 2 NA Intergenic Intergenic -509009 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 122-34 chr3 95576392 95576498 + 2 NA Intergenic Intergenic 106748 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 357-87 chr12 44481525 44481807 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 393995 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 607-58 chr17 70261497 70261995 + 2 NA Intergenic Intergenic 92211 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 607-80 chr2 123595436 123595879 + 2 NA Intergenic L1MC3|LINE|L1 429517 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 192-227 chrX 66229224 66229326 + 2 NA intron (NM_001367241, intron 15 of 18) L1PB1|LINE|L1 61525 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 729-22 chr13 111502349 111502808 + 2 NA Intergenic HAL1M8|LINE|L1 -93431 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 282-166 chr17 58300752 58301026 + 2 NA TTS (NM_001261835) TTS (NM_001261835) -19954 NM_000250 4353 Hs.458272 NM_000250 ENSG00000005381 MPO - myeloperoxidase protein-coding 202-70 chr14 48057122 48057274 + 2 NA Intergenic L1MA9|LINE|L1 -262184 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 613-94 chr4 52964601 52964945 + 2 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 102456 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 353-248 chr2 102345432 102345691 + 2 NA non-coding (NR_104167, exon 9 of 9) non-coding (NR_104167, exon 9 of 9) 8304 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 202-243 chr7 96017079 96017221 + 2 NA intron (NM_004411, intron 10 of 16) intron (NM_004411, intron 10 of 16) 202606 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 207-67 chr12 59360334 59360511 + 2 NA Intergenic L1M7|LINE|L1 -235607 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 264-344 chr5 156830372 156830528 + 2 NA Intergenic Intergenic -19845 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 274-124 chr14 56784472 56784671 + 2 NA Intergenic Intergenic 21096 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 305-65 chr10 68942226 68942411 + 2 NA intron (NM_024045, intron 13 of 14) intron (NM_024045, intron 13 of 14) -13852 NM_004728 9188 Hs.223141 NM_004728 ENSG00000165732 DDX21 GUA|GURDB|RH-II/GU|RH-II/GuA DExD-box helicase 21 protein-coding 522-105 chr17 53893946 53894404 + 2 NA Intergenic Intergenic 71248 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 212-138 chr19 56676657 56676799 + 2 NA Intergenic Intergenic -4971 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 188-48 chr14 20164944 20165081 + 2 NA Intergenic L1M2|LINE|L1 21276 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 348-444 chr6 40682384 40682687 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -95171 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 255-288 chr4 31450726 31450899 + 2 NA Intergenic L1MB7|LINE|L1 -55732 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 354-281 chr3 4095599 4095827 + 2 NA Intergenic Intergenic -207591 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 395-199 chr21 10686307 10686512 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 164895 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 355-483 chr8 10287292 10287473 + 2 NA intron (NM_001199729, intron 4 of 6) MIRc|SINE|MIR -187183 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 425-321 chr8 136355398 136355638 + 2 NA Intergenic MIRb|SINE|MIR -175280 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 754-4 chr1 222067062 222067534 + 2 NA Intergenic Intergenic -88778 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 354-434 chr7 68607566 68607876 + 2 NA Intergenic Intergenic 587468 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 347-567 chrX 118307054 118307326 + 2 NA Intergenic Intergenic -38883 NM_001184966 54521 Hs.98510 NM_019045 ENSG00000131725 WDR44 RAB11BP|RPH11|SYM-4 WD repeat domain 44 protein-coding 262-204 chr2 72817157 72817350 + 2 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 8780 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 194-155 chr5 5843077 5843235 + 2 NA Intergenic L2a|LINE|L2 420479 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 201-107 chr19 30547059 30547204 + 2 NA intron (NM_014717, intron 3 of 4) intron (NM_014717, intron 3 of 4) 174747 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 335-538 chr8 101859686 101859971 + 2 NA intron (NM_001040628, intron 4 of 7) HAL1|LINE|L1 -68859 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 495-159 chr3 94759008 94759377 + 2 NA Intergenic Intergenic -179071 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 209-319 chr8 84865570 84865746 + 2 NA intron (NM_001287244, intron 5 of 7) intron (NM_001287244, intron 5 of 7) 159731 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 307-523 chr9 103475375 103475554 + 2 NA Intergenic Intergenic -150431 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 269-56 chr11 9720574 9720804 + 2 NA intron (NM_015055, intron 3 of 11) intron (NM_015055, intron 3 of 11) -37604 NR_036485 283104 Hs.632156 NR_036485 ENSG00000246273 SBF2-AS1 - SBF2 antisense RNA 1 ncRNA 259-382 chr8 57016539 57016788 + 2 NA Intergenic MIRb|SINE|MIR -22796 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 596-164 chr8 69240000 69240387 + 2 NA Intergenic Intergenic -136003 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 212-35 chr10 39203961 39204102 + 2 NA Intergenic HERVS71-int|LTR|ERV1 507435 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 511-130 chr2 142239032 142239396 + 2 NA Intergenic L1MA9|LINE|L1 -107513 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 325-91 chr10 130269908 130270138 + 2 NA Intergenic Intergenic 133614 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 314-630 chrX 151481682 151481900 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -33760 NR_135614 105377213 Hs.147790 NR_135614 ENSG00000214915 LOC105377213 - uncharacterized LOC105377213 ncRNA 136-3 chr1 67261373 67261498 + 2 NA Intergenic Intergenic -45929 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 310-30 chr1 213745859 213746164 + 2 NA Intergenic L2a|LINE|L2 -178738 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 336-38 chr1 180733513 180733700 + 2 NA intron (NR_137330, intron 2 of 12) L2c|LINE|L2 101584 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 282-458 chr8 107018678 107018901 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -248545 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 178-12 chr1 222313355 222313524 + 2 NA Intergenic Intergenic 234665 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 335-374 chr4 5416699 5416928 + 2 NA intron (NM_001345969, intron 5 of 10) intron (NM_001345969, intron 5 of 10) -107756 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 577-18 chr1 170181355 170181800 + 2 NA intron (NR_146891, intron 1 of 4) intron (NR_146891, intron 1 of 4) 7198 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 258-203 chr2 133374927 133375119 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 108828 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 239-179 chr2 97696734 97696911 + 2 NA intron (NR_038386, intron 7 of 9) intron (NR_038386, intron 7 of 9) -16746 NM_001079 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 362-155 chr14 72815119 72815410 + 2 NA intron (NM_001280542, intron 1 of 10) L1ME1|LINE|L1 77385 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 482-22 chr1 193920264 193920725 + 2 NA Intergenic Intergenic 615749 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 439-62 chr12 14224675 14224963 + 2 NA Intergenic FLAM_C|SINE|Alu -140813 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 372-326 chr3 51169383 51169704 + 2 NA intron (NM_004947, intron 12 of 52) L1PREC2|LINE|L1 -215748 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 334-8 chr1 55499623 55499838 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 274089 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 462-101 chr16 52084819 52085207 + 2 NA promoter-TSS (NR_038233) promoter-TSS (NR_038233) 96 NR_038233 100505619 Hs.535454 NR_038233 ENSG00000260268 LINC00919 - long intergenic non-protein coding RNA 919 ncRNA 266-399 chr7 67887425 67887585 + 2 NA Intergenic L1M4|LINE|L1 -132748 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 295-208 chr2 52095207 52095474 + 2 NA intron (NR_135237, intron 7 of 10) L1MEg|LINE|L1 -275308 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 275-321 chr6 152123432 152123698 + 2 NA intron (NM_001347701, intron 17 of 17) intron (NM_001347701, intron 17 of 17) 44722 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 245-12 chr1 114360401 114360563 + 2 NA Intergenic MER83B-int|LTR|ERV1 150721 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 361-180 chr18 2088318 2088599 + 2 NA Intergenic HAL1|LINE|L1 483047 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 628-65 chr2 3883065 3883657 + 2 NA Intergenic MLT2B3|LTR|ERVL 90671 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 389-82 chr12 90567521 90567804 + 2 NA Intergenic Intergenic 274344 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 205-263 chr7 96360202 96360342 + 2 NA Intergenic Intergenic -38125 NM_001160210 10165 Hs.489190 NM_014251 ENSG00000004864 SLC25A13 ARALAR2|CITRIN|CTLN2 solute carrier family 25 member 13 protein-coding 160-103 chr7 7833642 7833758 + 2 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -115093 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 264-213 chr2 134377823 134378070 + 2 NA intron (NM_001371457, intron 11 of 16) intron (NM_001371457, intron 11 of 16) 123874 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 339-180 chr15 80655622 80655944 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -39527 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 669-22 chr14 25778060 25778551 + 2 NA Intergenic L1ME1|LINE|L1 -728008 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 245-257 chr4 89999307 89999452 + 2 NA Intergenic Intergenic 104525 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 252-79 chr11 113566327 113566527 + 2 NA Intergenic Intergenic -91029 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 521-154 chr22 45048161 45048512 + 2 NA Intergenic AluJb|SINE|Alu -38331 NM_001135862 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 361-208 chr2 32898704 32898988 + 2 NA intron (NR_027099, intron 9 of 10) intron (NR_027099, intron 9 of 10) -28281 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 552-175 chr5 104506399 104506783 + 2 NA Intergenic L1MC3|LINE|L1 -592883 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 299-302 chr3 179971089 179971287 + 2 NA intron (NM_001349396, intron 1 of 13) intron (NM_001349396, intron 1 of 13) 3037 NM_001349406 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 215-175 chr20 60552373 60552558 + 2 NA Intergenic Intergenic -12097 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 218-159 chr2 86608572 86608694 + 2 NA intron (NM_005667, intron 3 of 3) intron (NM_005667, intron 3 of 3) 15232 NM_001198952 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 335-8 chr1 72046188 72046431 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -209297 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 256-266 chr3 104492273 104492472 + 2 NA Intergenic L1ME1|LINE|L1 -874341 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 221-246 chr5 93973583 93973796 + 2 NA intron (NR_028080, intron 3 of 8) L1PA17|LINE|L1 137974 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 391-6 chr1 50900367 50900592 + 2 NA intron (NM_007051, intron 1 of 18) intron (NM_007051, intron 1 of 18) 59788 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 342-255 chr2 135556176 135556352 + 2 NA intron (NM_001282799, intron 1 of 22) L1MB8|LINE|L1 24780 NM_015361 23518 Hs.412462 NM_015361 ENSG00000048991 R3HDM1 R3HDM R3H domain containing 1 protein-coding 301-187 chr2 1890852 1891088 + 2 NA intron (NM_015025, intron 15 of 24) intron (NM_015025, intron 15 of 24) -146455 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 631-18 chr10 37869536 37869965 + 2 NA Intergenic L1MB5|LINE|L1 -11647 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 251-222 chr22 27232302 27232546 + 2 NA Intergenic Intergenic -7745 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 241-196 chr2 129131123 129131269 + 2 NA Intergenic LOR1-int|LTR|ERV1 142695 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 340-61 chr10 113093348 113093627 + 2 NA intron (NM_001146283, intron 5 of 12) intron (NM_001146283, intron 5 of 12) -33146 NM_001349871 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 221-5 chr1 55742856 55743070 + 2 NA Intergenic MIRb|SINE|MIR 202000 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 216-313 chr6 134812210 134812341 + 2 NA Intergenic Intergenic 137826 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 475-229 chr5 85768843 85769178 + 2 NA Intergenic L1MA3|LINE|L1 -513434 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 215-218 chr4 43408699 43408840 + 2 NA Intergenic MIRc|SINE|MIR 83774 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 316-342 chr3 35004894 35005067 + 2 NA intron (NR_110817, intron 2 of 3) MER103C|DNA|hAT-Charlie 389043 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 272-322 chr4 178409216 178409392 + 2 NA Intergenic Intergenic -501368 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 518-63 chr11 116399238 116399733 + 2 NA Intergenic (TAGATAG)n|Simple_repeat|Simple_repeat -239937 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 638-122 chr5 60966538 60966929 + 2 NA intron (NM_174889, intron 1 of 3) L1MA9|LINE|L1 21528 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 401-217 chr3 160081786 160082020 + 2 NA intron (NR_108088, intron 3 of 9) MER11C|LTR|ERVK 61254 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 183-15 chr10 60309686 60309840 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 80112 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 404-149 chr19 37796529 37796773 + 2 NA Intergenic AluJb|SINE|Alu -17061 NM_152360 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 624-133 chrX 84144869 84145286 + 2 NA intron (NM_014496, intron 6 of 21) L1ME1|LINE|L1 42858 NM_001330512 27330 Hs.234478 NM_014496 ENSG00000072133 RPS6KA6 PP90RSK4|RSK-4|RSK4|S6K-alpha-6|p90RSK6 ribosomal protein S6 kinase A6 protein-coding 293-231 chr20 16153553 16153733 + 2 NA Intergenic L1MC1|LINE|L1 -167761 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 360-500 chrX 67977050 67977332 + 2 NA Intergenic L1M4b|LINE|L1 432568 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 138-92 chr8 121097373 121097455 + 2 NA Intergenic MLT2F|LTR|ERVL -285368 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 414-29 chr10 68156611 68156844 + 2 NA intron (NR_045663, intron 6 of 17) intron (NR_045663, intron 6 of 17) 47239 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 414-33 chr10 105580421 105580669 + 2 NA Intergenic Intergenic 239788 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 252-115 chr14 54251162 54251327 + 2 NA Intergenic Intergenic -145624 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 366-135 chr15 46013935 46014190 + 2 NA Intergenic L1MA4A|LINE|L1 308867 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 232-72 chr12 22025450 22025597 + 2 NA Intergenic L1MA10|LINE|L1 -20651 NR_135117 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 336-602 chrX 94729723 94729896 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 333417 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 336-286 chr2 126141099 126141336 + 2 NA Intergenic L1M1|LINE|L1 -23232 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 289-423 chr6 156579871 156580102 + 2 NA Intergenic L1MCc|LINE|L1 -197869 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 307-452 chr7 56666320 56666519 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -128289 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 495-172 chr4 45524741 45525194 + 2 NA Intergenic Intergenic 599087 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 327-64 chr10 93750283 93750556 + 2 NA Intergenic L1MA5A|LINE|L1 -7390 NR_131777 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 682-100 chr8 55499042 55499524 + 2 NA intron (NM_052898, intron 2 of 2) intron (NM_052898, intron 2 of 2) 21695 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 432-72 chr12 131887113 131887389 + 2 NA Intergenic AluSx|SINE|Alu -7371 NM_003565 8408 Hs.47061 NM_003565 ENSG00000177169 ULK1 ATG1|ATG1A|UNC51|Unc51.1|hATG1 unc-51 like autophagy activating kinase 1 protein-coding 403-299 chr8 33294710 33294929 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 178327 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 429-97 chr14 86228006 86228325 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 293487 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 240-67 chr10 120198106 120198331 + 2 NA Intergenic L1PA16|LINE|L1 157005 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 498-85 chr14 67192746 67193179 + 2 NA intron (NM_173526, intron 1 of 8) intron (NM_173526, intron 1 of 8) 3522 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 367-55 chr10 83156919 83157175 + 2 NA Intergenic Intergenic 520042 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 192-231 chrX 88060245 88060373 + 2 NA Intergenic Intergenic 542507 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 340-381 chr3 179855963 179856251 + 2 NA intron (NM_001349408, intron 8 of 14) intron (NM_001349408, intron 8 of 14) -42087 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 179-120 chr8 80564109 80564238 + 2 NA Intergenic Intergenic 77947 NM_001105539 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 328-228 chr19 3142544 3142859 + 2 NA intron (NR_110670, intron 3 of 3) AluSz|SINE|Alu 6668 NM_002068 2769 Hs.73797 NM_002068 ENSG00000060558 GNA15 GNA16 G protein subunit alpha 15 protein-coding 188-42 chr12 86781427 86781584 + 2 NA intron (NM_001351286, intron 1 of 7) intron (NM_001351286, intron 1 of 7) -36356 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 305-413 chr4 170217688 170217925 + 2 NA Intergenic Intergenic -8785 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 269-153 chr17 13176158 13176421 + 2 NA Intergenic Intergenic 130471 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 482-268 chr8 79249688 79250037 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -82326 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 933-16 chr19 40021607 40022153 + 2 NA TTS (NM_001297763) TTS (NM_001297763) 24820 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 246-127 chr14 87803051 87803227 + 2 NA Intergenic Intergenic -147845 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 297-530 chrX 137473304 137473489 + 2 NA Intergenic MIRc|SINE|MIR -92731 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 566-185 chr7 110220822 110221278 + 2 NA Intergenic Intergenic -260837 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 421-102 chr16 82093804 82094076 + 2 NA intron (NM_002153, intron 4 of 4) MER41B|LTR|ERV1 58687 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 392-254 chr5 99624516 99624859 + 2 NA Intergenic L1MA1|LINE|L1 90697 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 491-96 chr18 6085899 6086276 + 2 NA intron (NM_001365766, intron 15 of 16) intron (NM_001365766, intron 15 of 16) -170657 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 792-6 chr10 65772277 65773017 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 201222 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 130-50 chr22 24921572 24921696 + 2 NA intron (NM_001098498, intron 23 of 23) MER119|DNA|hAT-Charlie 25061 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 321-73 chr10 91090648 91090913 + 2 NA Intergenic Intergenic 44972 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 381-64 chr10 118283950 118284245 + 2 NA Intergenic AluSx|SINE|Alu 58227 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 665-7 chr1 215372411 215373048 + 2 NA Intergenic Intergenic -194575 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 172-53 chr2 9220511 9220641 + 2 NA intron (NM_003887, intron 1 of 27) L1MB7|LINE|L1 13764 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 137-54 chr20 12820891 12820990 + 2 NA Intergenic Intergenic 116023 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 290-136 chr14 72047227 72047391 + 2 NA intron (NM_001370288, intron 2 of 16) MIRb|SINE|MIR 113782 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 720-26 chr14 29970748 29971317 + 2 NA Intergenic LTR1A2|LTR|ERV1 -43185 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 314-311 chr2 165424965 165425183 + 2 NA Intergenic Intergenic -44624 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 308-478 chr8 5659243 5659506 + 2 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -664460 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 225-297 chr5 150881668 150881867 + 2 NA intron (NM_001346557, intron 3 of 3) L1M1|LINE|L1 23216 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 227-39 chr10 60654713 60654916 + 2 NA intron (NM_001204403, intron 1 of 43) L1M4a1|LINE|L1 78714 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 157-16 chr10 28306234 28306312 + 2 NA Intergenic Intergenic -3209 NM_001318170 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 336-551 chr8 114226877 114227128 + 2 NA Intergenic MER74A|LTR|ERVL -790063 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 325-192 chr16 12342842 12343054 + 2 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 366214 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 715-87 chr8 105919676 105920276 + 2 NA intron (NR_125796, intron 2 of 7) L1PA17|LINE|L1 140527 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 465-176 chr3 96978049 96978343 + 2 NA intron (NM_001080448, intron 2 of 17) Tigger2a|DNA|TcMar-Tigger 163602 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 351-19 chr1 188934983 188935190 + 2 NA Intergenic AluJo|SINE|Alu 1491458 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 418-153 chr3 44732476 44732845 + 2 NA intron (NM_145044, intron 2 of 2) L1ME3G|LINE|L1 3025 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 518-212 chr4 106398194 106398556 + 2 NA Intergenic Intergenic -30940 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 297-291 chr3 73987739 73987905 + 2 NA Intergenic Intergenic 178578 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 761-13 chr14 38670895 38671457 + 2 NA Intergenic Intergenic -211420 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 188-155 chr4 123144567 123144747 + 2 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) 221579 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 382-429 chr8 138383247 138383444 + 2 NA intron (NM_001362965, intron 1 of 19) MIR|SINE|MIR 113916 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 204-25 chr10 35488571 35488737 + 2 NA intron (NM_181698, intron 4 of 11) Charlie2a|DNA|hAT-Charlie -116687 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 353-23 chr1 116298553 116298834 + 2 NA Intergenic L1ME3A|LINE|L1 -74551 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 593-144 chr8 36219140 36219551 + 2 NA Intergenic MER57A1|LTR|ERV1 -509025 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 484-199 chr4 187482400 187482850 + 2 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) 22988 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 199-105 chr2 41804362 41804490 + 2 NA Intergenic Intergenic -73129 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 339-592 chr8 127567185 127567485 + 2 NA Intergenic Intergenic -85196 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 349-283 chr2 218077450 218077716 + 2 NA intron (NR_034176, intron 11 of 13) intron (NR_034176, intron 11 of 13) 8568 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 333-181 chr16 83610131 83610301 + 2 NA intron (NM_001220489, intron 7 of 12) Arthur1|DNA|hAT-Tip100 101870 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 371-267 chr4 27968740 27969100 + 2 NA Intergenic Intergenic 751441 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 231-230 chr3 88509220 88509388 + 2 NA Intergenic Intergenic 170848 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 339-273 chr2 115486986 115487177 + 2 NA intron (NM_001321912, intron 4 of 25) L1HS|LINE|L1 143266 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 460-25 chr10 12406579 12406972 + 2 NA intron (NM_001351032, intron 3 of 11) intron (NM_001351032, intron 3 of 11) 17793 NM_001351032 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 537-276 chr9 84838705 84839166 + 2 NA intron (NM_001018064, intron 12 of 17) intron (NM_001018064, intron 12 of 17) 133034 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 521-211 chr6 12598122 12598526 + 2 NA Intergenic L2c|LINE|L2 -12920 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 314-573 chr8 93864679 93864909 + 2 NA Intergenic Intergenic 51325 NR_039602 100616169 NR_039602 ENSG00000284288 MIR378D2 mir-378d-2 microRNA 378d-2 ncRNA 215-139 chr2 32955508 32955717 + 2 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 8659 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 245-46 chr10 56961334 56961507 + 2 NA Intergenic Intergenic 343139 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 244-352 chr7 131336854 131337032 + 2 NA intron (NM_001321316, intron 1 of 17) L1MEg|LINE|L1 9067 NM_001321316 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 386-174 chr2 81562470 81562760 + 2 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat -95669 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 184-105 chr2 213457069 213457209 + 2 NA intron (NR_047660, intron 8 of 14) L1MC4|LINE|L1 172675 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 456-81 chr13 91008321 91008753 + 2 NA Intergenic Intergenic 81080 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 321-273 chr19 57608617 57608845 + 2 NA 3' UTR (NM_001321981, exon 4 of 4) 3' UTR (NM_001321981, exon 4 of 4) -5511 NM_003435 7693 Hs.469694 NM_003435 ENSG00000213762 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 324-29 chr1 174319422 174319743 + 2 NA intron (NM_001366445, intron 11 of 13) L1MC|LINE|L1 44482 NM_001366449 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 370-82 chr11 39003169 39003380 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 354416 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 332-133 chr12 129234725 129234975 + 2 NA intron (NM_133448, intron 4 of 8) intron (NM_133448, intron 4 of 8) 26249 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 242-412 chr8 127421506 127421681 + 2 NA intron (NR_117100, intron 4 of 5) intron (NR_117100, intron 4 of 5) 5768 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 171-9 chr1 91800322 91800427 + 2 NA intron (NM_001195684, intron 3 of 17) AluJb|SINE|Alu 85777 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 439-268 chr7 71353477 71353727 + 2 NA intron (NM_022479, intron 2 of 10) L1MC4|LINE|L1 -45832 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 322-552 chr8 135276869 135277038 + 2 NA intron (NR_120396, intron 1 of 4) L1PA15|LINE|L1 42822 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 168-48 chr19 30154460 30154579 + 2 NA Intergenic Intergenic 212280 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 494-13 chr1 158262444 158262931 + 2 NA Intergenic LOR1-int|LTR|ERV1 8263 NM_001763 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 349-494 chr8 46008939 46009267 + 2 NA Intergenic ALR/Alpha|Satellite|centr 608540 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 263-463 chrX 84420782 84420951 + 2 NA intron (NM_001177478, intron 4 of 9) L1MA1|LINE|L1 81587 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 347-319 chr3 127335054 127335261 + 2 NA intron (NR_110147, intron 3 of 4) L1MA8|LINE|L1 -47111 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 334-212 chr17 70865431 70865647 + 2 NA Intergenic Intergenic 336640 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 351-270 chr21 20251549 20251780 + 2 NA Intergenic Intergenic 7021 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 332-124 chr12 38040673 38040989 + 2 NA Intergenic ALR/Alpha|Satellite|centr -275943 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 288-71 chr11 95568787 95568940 + 2 NA Intergenic MLT1K-int|LTR|ERVL-MaLR 220919 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 467-49 chr11 71318403 71318810 + 2 NA Intergenic (TGTT)n|Simple_repeat|Simple_repeat -93810 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 434-32 chr10 23787129 23787381 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 92528 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 389-328 chr6 148096228 148096607 + 2 NA Intergenic Intergenic -175911 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 211-8 chr1 106540992 106541143 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -277172 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 248-273 chr4 35946879 35947069 + 2 NA Intergenic AluSz|SINE|Alu 296965 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 385-81 chr13 37856906 37857200 + 2 NA intron (NM_003306, intron 1 of 10) L1MA2|LINE|L1 13372 NM_001135956 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 230-217 chr21 29224643 29224866 + 2 NA intron (NR_027072, intron 1 of 1) MER33|DNA|hAT-Charlie 31260 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 286-348 chr5 27979224 27979426 + 2 NA Intergenic L1PA16|LINE|L1 308340 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 408-285 chr5 170124343 170124658 + 2 NA Intergenic Intergenic 18603 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 381-121 chr16 21108302 21108526 + 2 NA intron (NM_001347886, intron 14 of 61) intron (NM_001347886, intron 14 of 61) 42432 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 530-54 chr12 21552539 21553010 + 2 NA intron (NM_021957, intron 11 of 15) L2c|LINE|L2 24849 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 262-96 chr12 37803722 37803963 + 2 NA Intergenic ALR/Alpha|Satellite|centr -512932 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 243-472 chr9 30529558 30529783 + 2 NA Intergenic Intergenic -121216 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 382-177 chr2 34449235 34449477 + 2 NA Intergenic L1MA2|LINE|L1 -228201 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 373-332 chr5 114920764 114921019 + 2 NA Intergenic L1P1|LINE|L1 -147478 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 519-110 chr2 116293802 116294171 + 2 NA Intergenic L1MB1|LINE|L1 950171 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 373-115 chr14 70444255 70444578 + 2 NA Intergenic MER4A1|LTR|ERV1 -7758 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 339-276 chr2 133530797 133531073 + 2 NA intron (NM_207481, intron 2 of 17) MLT1H|LTR|ERVL-MaLR 37528 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 326-185 chr16 52385956 52386145 + 2 NA Intergenic Intergenic 127486 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 259-293 chr4 110291086 110291269 + 2 NA Intergenic Intergenic -92562 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 296-227 chr2 97837754 97837965 + 2 NA intron (NM_015348, intron 7 of 40) L1ME1|LINE|L1 103453 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 231-124 chr17 8598437 8598624 + 2 NA intron (NM_001256012, intron 3 of 42) intron (NM_001256012, intron 3 of 42) 32195 NM_005964 4628 Hs.16355 NM_005964 ENSG00000133026 MYH10 NMMHC-IIB|NMMHCB myosin heavy chain 10 protein-coding 189-197 chr8 31703034 31703167 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 63348 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 361-492 chrX 99272652 99272930 + 2 NA Intergenic Intergenic 1137482 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 419-271 chr7 46762810 46763225 + 2 NA Intergenic Intergenic -65895 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 323-423 chr5 96124694 96124945 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 45681 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 221-318 chr9 25528190 25528392 + 2 NA Intergenic Intergenic 150567 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 376-342 chr6 34423055 34423341 + 2 NA intron (NM_001203245, intron 3 of 5) AluJo|SINE|Alu 2871 NM_001014 6204 Hs.406620 NM_001014 ENSG00000124614 RPS10 DBA9|S10 ribosomal protein S10 protein-coding 281-210 chr2 76626123 76626324 + 2 NA Intergenic L1MA4A|LINE|L1 -359742 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 243-171 chr17 71394061 71394285 + 2 NA Intergenic Intergenic -191994 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 350-405 chr5 105375322 105375628 + 2 NA Intergenic L1PA15-16|LINE|L1 276001 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 304-374 chr4 37112055 37112285 + 2 NA Intergenic Intergenic 110391 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 479-246 chr8 77533547 77533843 + 2 NA Intergenic Intergenic 82998 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 396-325 chr7 21212667 21213035 + 2 NA Intergenic Intergenic -215232 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 238-45 chr10 64669922 64670070 + 2 NA Intergenic Intergenic -155532 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 288-362 chr6 51202932 51203139 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 384164 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 406-13 chr1 109972316 109972680 + 2 NA Intergenic L1ME1|LINE|L1 -12267 NM_001242673 10768 Hs.743973 NM_006621 ENSG00000168710 AHCYL1 DCAL|IRBIT|PPP1R78|PRO0233|XPVKONA adenosylhomocysteinase like 1 protein-coding 261-390 chr8 127611279 127611505 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 122575 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 233-67 chr11 104760232 104760442 + 2 NA Intergenic L1M2|LINE|L1 138333 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 231-282 chr5 52206809 52207010 + 2 NA Intergenic Intergenic 198878 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 256-426 chr8 97477921 97478112 + 2 NA Intergenic L1PA16|LINE|L1 -31519 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 266-379 chr6 143614435 143614655 + 2 NA intron (NM_014721, intron 1 of 12) intron (NM_014721, intron 1 of 12) 6365 NM_001100166 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 324-338 chr3 15839770 15839938 + 2 NA intron (NM_001349279, intron 1 of 28) L1MA2|LINE|L1 19960 NM_001349279 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 392-348 chr9 102251820 102252140 + 2 NA Intergenic Intergenic -267657 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 373-72 chr10 128986485 128986803 + 2 NA Intergenic AluSc|SINE|Alu 73811 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 391-192 chr2 186887831 186888059 + 2 NA Intergenic Intergenic -38775 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 361-94 chr12 16517931 16518248 + 2 NA Intergenic L2a|LINE|L2 87290 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 175-36 chr11 75494487 75494634 + 2 NA intron (NM_030792, intron 1 of 16) Zaphod|DNA|hAT-Tip100 31013 NM_001351168 81544 Hs.503297 NM_030792 ENSG00000158555 GDPD5 GDE2|PP1665 glycerophosphodiester phosphodiesterase domain containing 5 protein-coding 118-62 chr8 111054206 111054286 + 2 NA Intergenic L1MB5|LINE|L1 -26813 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 329-520 chr7 1964494 1964714 + 2 NA intron (NM_001013837, intron 15 of 18) intron (NM_001013837, intron 15 of 18) -24033 NM_001304525 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 487-311 chr9 122683660 122683982 + 2 NA Intergenic L1M2|LINE|L1 8691 NM_001005234 26735 Hs.626839 NM_001005234 ENSG00000171481 OR1L3 OR9-28|OR9-D olfactory receptor family 1 subfamily L member 3 protein-coding 565-147 chr5 118496195 118496653 + 2 NA intron (NR_104610, intron 4 of 9) intron (NR_104610, intron 4 of 9) 65693 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 382-241 chr20 59644198 59644454 + 2 NA intron (NM_001281507, intron 1 of 12) intron (NM_001281507, intron 1 of 12) 15717 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 263-183 chr19 57657559 57657813 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -11249 NM_152677 201516 Hs.469663 NM_152677 ENSG00000180532 ZSCAN4 ZNF494 zinc finger and SCAN domain containing 4 protein-coding 273-115 chr13 45550229 45550431 + 2 NA intron (NM_182542, intron 11 of 14) intron (NM_182542, intron 11 of 14) 65409 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 377-5 chr1 55745543 55745800 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 199292 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 246-152 chr17 51585120 51585318 + 2 NA Intergenic L1M5|LINE|L1 149792 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 453-115 chr2 82469426 82469726 + 2 NA Intergenic Intergenic -387227 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 242-82 chr12 77258752 77258922 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 -193268 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 458-210 chr5 125823748 125824158 + 2 NA Intergenic Intergenic 330692 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 329-621 chrX 82203700 82204013 + 2 NA Intergenic Intergenic 1001754 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 199-60 chr14 56646126 56646279 + 2 NA intron (NM_017799, intron 15 of 15) L3b|LINE|CR1 66404 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 562-217 chr8 85243171 85243705 + 2 NA Intergenic AluSq2|SINE|Alu -2020 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 223-26 chr1 232721894 232722072 + 2 NA intron (NR_146922, intron 2 of 2) intron (NR_146922, intron 2 of 2) 3912 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 299-423 chr7 64930289 64930470 + 2 NA non-coding (NR_003099, exon 5 of 5) non-coding (NR_003099, exon 5 of 5) 27137 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 486-57 chr12 15280326 15280659 + 2 NA Intergenic Intergenic -42016 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 273-42 chr10 28515944 28516164 + 2 NA Intergenic L1MB5|LINE|L1 16300 NR_033805 220906 Hs.403253 NR_033805 WAC-AS1 - WAC antisense RNA 1 (head to head) ncRNA 473-21 chr1 222069524 222069857 + 2 NA Intergenic Intergenic -91170 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 553-114 chr2 67705289 67705639 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 120098 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 327-105 chr12 1421463 1421643 + 2 NA intron (NR_027948, intron 18 of 19) LTR8B|LTR|ERV1 -78938 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 255-381 chr7 36000253 36000446 + 2 NA Intergenic L1MC5|LINE|L1 -94961 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 167-29 chr12 96637467 96637606 + 2 NA intron (NM_001306084, intron 32 of 67) intron (NM_001306084, intron 32 of 67) 147959 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 365-257 chr3 50028768 50029089 + 2 NA intron (NM_001349194, intron 3 of 17) intron (NM_001349194, intron 3 of 17) -59991 NR_036627 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 305-150 chr14 53483505 53483743 + 2 NA Intergenic Intergenic 330270 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 377-285 chr4 45209516 45209805 + 2 NA Intergenic Intergenic -483026 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 391-285 chr5 40238131 40238467 + 2 NA Intergenic Intergenic 186008 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 276-455 chr8 85561574 85561738 + 2 NA Intergenic Intergenic 94020 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 454-240 chr4 103875010 103875403 + 2 NA Intergenic L1M5|LINE|L1 -155221 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 246-254 chr3 68386327 68386502 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -114223 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 189-169 chr5 164355649 164355770 + 2 NA Intergenic Intergenic 111693 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 550-184 chr5 87382621 87382986 + 2 NA intron (NM_022650, intron 20 of 24) AluJr4|SINE|Alu 30101 NM_001199189 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 309-514 chr7 64510306 64510532 + 2 NA Intergenic LTR25-int|LTR|ERV1 52652 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 331-224 chr18 64721630 64721955 + 2 NA Intergenic Intergenic -461737 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 338-272 chr2 129811704 129811894 + 2 NA Intergenic Intergenic 65692 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 217-304 chr5 103978096 103978230 + 2 NA Intergenic L1MA4A|LINE|L1 -415374 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 334-556 chr8 139759515 139759825 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -56547 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 322-71 chr10 81502581 81502769 + 2 NA Intergenic LTR12C|LTR|ERV1 -372519 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 277-99 chr13 37480018 37480184 + 2 NA Intergenic Intergenic 4683 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 130-45 chr2 241045587 241045667 + 2 NA intron (NM_001080437, intron 8 of 31) L1ME1|LINE|L1 47009 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 346-78 chr11 98832456 98832716 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -188363 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 285-447 chr9 18019832 18020052 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 440876 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 263-225 chr2 227514082 227514323 + 2 NA intron (NM_004504, intron 2 of 12) intron (NM_004504, intron 2 of 12) 42030 NM_004504 3267 Hs.352962 NM_004504 ENSG00000173744 AGFG1 HRB|RAB|RIP ArfGAP with FG repeats 1 protein-coding 245-366 chr9 32831016 32831186 + 2 NA Intergenic L2a|LINE|L2 47561 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 855-14 chr14 43450462 43451150 + 2 NA Intergenic Intergenic 1056477 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 228-267 chr5 52630729 52630887 + 2 NA Intergenic L1PA15|LINE|L1 -157108 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 172-13 chr10 31055284 31055453 + 2 NA Intergenic Intergenic -23431 NM_001143768 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 206-33 chr10 82208037 82208209 + 2 NA intron (NM_001165973, intron 2 of 10) MIR|SINE|MIR 24797 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 228-157 chr2 42266871 42267031 + 2 NA intron (NM_001145076, intron 5 of 21) L2|LINE|L2 93087 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 251-282 chr5 3002662 3002867 + 2 NA Intergenic Intergenic 84910 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 382-53 chr10 129927762 129928048 + 2 NA intron (NM_001005463, intron 6 of 15) intron (NM_001005463, intron 6 of 15) 36369 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 196-228 chr6 119435986 119436139 + 2 NA Intergenic Intergenic 55240 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 218-336 chr8 134881312 134881498 + 2 NA intron (NR_125427, intron 2 of 2) MIRb|SINE|MIR 31470 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 245-137 chr14 89057233 89057416 + 2 NA Intergenic L2a|LINE|L2 232673 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 154-69 chr3 60286014 60286125 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -205160 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 253-84 chr11 109432468 109432658 + 2 NA Intergenic Intergenic 10373 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 246-444 chrX 134925144 134925332 + 2 NA Intergenic LOR1b|LTR|ERV1 -9981 NM_019556 56180 Hs.590789 NM_019556 ENSG00000101928 MOSPD1 DJ473B4 motile sperm domain containing 1 protein-coding 297-249 chr2 220937263 220937499 + 2 NA Intergenic Intergenic 634923 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 428-36 chr11 39707515 39707931 + 2 NA Intergenic Intergenic 585407 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 422-196 chr3 147137948 147138206 + 2 NA Intergenic L1ME3B|LINE|L1 216154 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 245-28 chr1 244619089 244619290 + 2 NA intron (NM_001130957, intron 20 of 21) L2|LINE|L2 -33859 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 350-525 chr8 106466942 106467128 + 2 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 19111 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 219-124 chr16 51203938 51204126 + 2 NA intron (NR_039672, intron 5 of 6) MIR|SINE|MIR -52760 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 261-248 chr3 103188616 103188837 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 335390 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 261-69 chr11 87327643 87327874 + 2 NA non-coding (NR_033149, exon 14 of 14) non-coding (NR_033149, exon 14 of 14) 289824 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 291-468 chr8 126057778 126058005 + 2 NA Intergenic MIR3|SINE|MIR -106694 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 348-309 chr3 98401501 98401813 + 2 NA Intergenic Intergenic 10991 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 271-207 chr2 116364500 116364664 + 2 NA Intergenic Intergenic 1020767 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 211-279 chr7 80955673 80955792 + 2 NA Intergenic L1MA4|LINE|L1 -33343 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 287-359 chr6 104128397 104128615 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 731040 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 427-28 chr10 88945000 88945419 + 2 NA intron (NM_001141945, intron 3 of 8) intron (NM_001141945, intron 3 of 8) 7564 NM_001613 59 Hs.500483 NM_001613 ENSG00000107796 ACTA2 ACTSA actin alpha 2, smooth muscle protein-coding 345-392 chr4 96561110 96561323 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 250513 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 203-27 chr10 68297786 68297920 + 2 NA intron (NM_001033083, intron 2 of 8) SVA_E|Retroposon|SVA -33840 NM_001322438 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 335-88 chr11 28338281 28338597 + 2 NA Intergenic Intergenic 139109 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 390-386 chr8 102391359 102391625 + 2 NA intron (NM_001282873, intron 1 of 58) L1MC5a|LINE|L1 21197 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 748-28 chr14 42882131 42882872 + 2 NA Intergenic Intergenic 1275645 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 475-270 chr8 16660342 16660723 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 341813 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 273-356 chr5 54291924 54292115 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 18554 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 148-70 chr5 18234708 18234841 + 2 NA Intergenic Intergenic 427500 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 505-214 chr4 37205997 37206362 + 2 NA Intergenic Intergenic 35812 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 261-52 chr10 122748833 122749016 + 2 NA Intergenic Intergenic -7770 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 351-157 chr16 19155588 19155852 + 2 NA Intergenic L2a|LINE|L2 -12114 NM_001330509 51760 Hs.258326 NM_016524 ENSG00000103528 SYT17 sytXVII synaptotagmin 17 protein-coding 345-142 chr13 104338064 104338402 + 2 NA Intergenic MIRb|SINE|MIR 913033 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 228-51 chr11 23884458 23884663 + 2 NA Intergenic Intergenic -465370 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 125-59 chr6 112059654 112059741 + 2 NA intron (NR_125354, intron 2 of 6) MLT1D|LTR|ERVL-MaLR 5529 NR_125353 8838 Hs.558428 NM_003880 ENSG00000112761 CCN6 LIBC|PPAC|PPD|WISP-3|WISP3 cellular communication network factor 6 protein-coding 561-180 chr7 34414461 34414841 + 2 NA intron (NR_033665, intron 3 of 3) L1MD1|LINE|L1 -243567 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 241-78 chr12 5829944 5830144 + 2 NA intron (NM_001278596, intron 6 of 25) MIR3|SINE|MIR 115215 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 279-186 chr2 99616214 99616392 + 2 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -126286 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 129-36 chr2 76142569 76142684 + 2 NA Intergenic Intergenic -431711 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 357-248 chr21 23631586 23631876 + 2 NA Intergenic L1MEc|LINE|L1 -246896 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 660-5 chr1 115571267 115571736 + 2 NA Intergenic AluSx1|SINE|Alu -70469 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 374-249 chr3 87874098 87874299 + 2 NA intron (NM_001322210, intron 2 of 2) L1MB2|LINE|L1 81492 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 531-217 chr6 61938742 61939111 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 347299 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 406-272 chr7 38716267 38716516 + 2 NA Intergenic Intergenic -29302 NR_028347 340286 Hs.144075 NM_001105282 ENSG00000164556 FAM183BP FAM183B|THEG6 acyloxyacyl hydrolase (neutrophil) pseudo 296-471 chr8 101553229 101553457 + 2 NA intron (NM_024915, intron 3 of 15) intron (NM_024915, intron 3 of 15) 60904 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 252-423 chr8 95564106 95564307 + 2 NA intron (NR_038207, intron 2 of 2) L1MA2|LINE|L1 -295005 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 484-46 chr12 43381075 43381465 + 2 NA intron (NM_025003, intron 31 of 38) L1MB7|LINE|L1 170933 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 260-75 chr11 37687333 37687522 + 2 NA Intergenic L1M5|LINE|L1 -251174 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 211-67 chr12 93317516 93317669 + 2 NA intron (NR_040096, intron 2 of 4) intron (NR_040096, intron 2 of 4) 60144 NR_040096 643339 Hs.741299 NR_040096 LOC643339 - uncharacterized LOC643339 ncRNA 663-10 chr10 43974312 43974955 + 2 NA intron (NR_136147, intron 4 of 4) intron (NR_136147, intron 4 of 4) 62231 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 316-496 chr6 147705852 147706119 + 2 NA Intergenic Intergenic 197295 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 352-326 chr3 95039945 95040134 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 101776 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 656-58 chr2 81107601 81108044 + 2 NA Intergenic Intergenic 359124 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 468-198 chr3 74757013 74757330 + 2 NA Intergenic L1MA2|LINE|L1 -236031 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 548-205 chr7 13135242 13135649 + 2 NA Intergenic MIRc|SINE|MIR 447812 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 455-59 chr12 48596386 48596766 + 2 NA Intergenic L1ME3B|LINE|L1 -26530 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 302-178 chr18 2334194 2334388 + 2 NA Intergenic Intergenic 237214 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 561-119 chr22 35251553 35251913 + 2 NA Intergenic L1MA10|LINE|L1 -5760 NM_001362972 10042 Hs.588815 NM_005487 ENSG00000100281 HMGXB4 HMG2L1|HMGBCG|THC211630 HMG-box containing 4 protein-coding 339-487 chr6 34700680 34700905 + 2 NA Intergenic AluSx1|SINE|Alu 3847 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 201-148 chr3 16651042 16651227 + 2 NA Intergenic LTR48B|LTR|ERV1 -45711 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 616-156 chr7 33920847 33921243 + 2 NA intron (NM_133468, intron 3 of 15) intron (NM_133468, intron 3 of 15) 15506 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 358-223 chr2 99038006 99038214 + 2 NA intron (NR_146001, intron 15 of 18) L1PBa|LINE|L1 -101885 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 411-227 chr5 40184279 40184614 + 2 NA Intergenic Intergenic 132155 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 233-201 chr20 1548350 1548507 + 2 NA intron (NM_178460, intron 2 of 3) L1MB7|LINE|L1 9277 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 199-101 chr2 20940689 20940816 + 2 NA Intergenic Intergenic 103321 NM_000384 338 Hs.120759 NM_000384 ENSG00000084674 APOB FLDB|LDLCQ4|apoB-100|apoB-48 apolipoprotein B protein-coding 329-25 chr1 182292819 182293102 + 2 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 21101 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 321-177 chr14 72284645 72284856 + 2 NA intron (NM_001370288, intron 2 of 16) THE1B-int|LTR|ERVL-MaLR -232070 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 560-110 chr3 33814466 33814952 + 2 NA intron (NM_001256192, intron 3 of 5) (TA)n|Simple_repeat|Simple_repeat 16079 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 425-140 chr2 118945777 118946149 + 2 NA intron (NM_006770, intron 1 of 16) intron (NM_006770, intron 1 of 16) 3794 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 410-289 chr7 120893953 120894324 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -35994 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 321-279 chr2 33486678 33486909 + 2 NA intron (NM_001349975, intron 3 of 19) L2c|LINE|L2 10144 NM_001349976 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 380-181 chr2 69732723 69733044 + 2 NA intron (NM_001320698, intron 3 of 14) intron (NM_001320698, intron 3 of 14) -9251 NM_001320702 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 244-276 chr4 112422358 112422525 + 2 NA intron (NM_001102406, intron 5 of 15) MLT1G1-int|LTR|ERVL-MaLR -92938 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 235-378 chr8 136133562 136133724 + 2 NA Intergenic Intergenic -397155 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 296-52 chr10 67206603 67206776 + 2 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 194423 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 421-74 chr14 19875549 19875892 + 2 NA promoter-TSS (NM_001005501) promoter-TSS (NM_001005501) -548 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 613-15 chr10 65744439 65744768 + 2 NA intron (NR_120647, intron 5 of 5) intron (NR_120647, intron 5 of 5) 173178 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 379-325 chr7 111199414 111199667 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 108413 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 472-267 chr6 47969294 47969652 + 2 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 99216 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 355-371 chr4 84472926 84473151 + 2 NA Intergenic L3|LINE|CR1 25196 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 257-73 chr11 110160254 110160472 + 2 NA intron (NM_033390, intron 4 of 5) Tigger3b|DNA|TcMar-Tigger 66971 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 468-119 chr17 65911018 65911456 + 2 NA intron (NM_001353129, intron 19 of 26) HAL1b|LINE|L1 -84694 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 316-429 chr5 25093600 25093907 + 2 NA Intergenic L3|LINE|CR1 96903 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 390-153 chr18 24893990 24894219 + 2 NA Intergenic Intergenic 93875 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 214-364 chrX 98440628 98440756 + 2 NA Intergenic L1PB1|LINE|L1 -876157 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 523-273 chr8 103644600 103644965 + 2 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -142872 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 309-357 chr3 105631596 105631821 + 2 NA Intergenic Intergenic 235883 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 313-260 chr2 79687140 79687401 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -37911 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 319-560 chr8 139843625 139843927 + 2 NA intron (NM_001160372, intron 21 of 22) MLT1D|LTR|ERVL-MaLR -140653 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 704-75 chr7 38135121 38135656 + 2 NA Intergenic L1ME1|LINE|L1 -42857 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 321-494 chr6 59006599 59006793 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1045250 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 609-53 chr2 18125461 18125940 + 2 NA Intergenic Intergenic 247033 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 330-67 chr10 88103881 88104164 + 2 NA Intergenic Intergenic 240397 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 199-140 chr20 11651497 11651637 + 2 NA Intergenic Intergenic 219148 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 253-402 chr8 36057757 36057992 + 2 NA Intergenic Intergenic -347554 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 632-90 chr5 9019986 9020457 + 2 NA Intergenic Intergenic 33674 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 172-134 chr8 95264778 95264867 + 2 NA intron (NM_001363260, intron 1 of 4) intron (NM_001363260, intron 1 of 4) -4014 NR_038206 100616530 Hs.554328 NR_038201 ENSG00000253773 C8orf37-AS1 - C8orf37 antisense RNA 1 ncRNA 389-22 chr1 247770874 247771139 + 2 NA Intergenic MIR|SINE|MIR -12600 NM_012353 26188 Hs.381306 NM_012353 ENSG00000221888 OR1C1 HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27 olfactory receptor family 1 subfamily C member 1 protein-coding 403-154 chr2 60119658 60119880 + 2 NA Intergenic L1MC4|LINE|L1 263267 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 346-32 chr1 192488955 192489210 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -86691 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 497-232 chr5 97963074 97963424 + 2 NA Intergenic L1M5|LINE|L1 122491 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 267-365 chr6 45218057 45218264 + 2 NA intron (NM_001350325, intron 2 of 10) L1MD2|LINE|L1 -20390 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 414-297 chr7 17866719 17867049 + 2 NA intron (NM_001350862, intron 9 of 25) L1MA4|LINE|L1 73610 NR_146933 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 246-386 chr8 6101788 6101916 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 304696 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 213-56 chr11 65835478 65835650 + 2 NA intron (NM_152760, intron 1 of 12) intron (NM_152760, intron 1 of 12) 1601 NM_152760 254122 Hs.591950 NM_152760 ENSG00000172803 SNX32 SNX6B sorting nexin 32 protein-coding 184-98 chr2 133691146 133691328 + 2 NA Intergenic Intergenic -122774 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 329-480 chr5 158082246 158082424 + 2 NA Intergenic Intergenic -223190 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 335-254 chr2 104174796 104175073 + 2 NA Intergenic MLT2D|LTR|ERVL 233398 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 399-15 chr1 172783463 172783735 + 2 NA Intergenic L1MA2|LINE|L1 124496 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 274-297 chr4 163860011 163860231 + 2 NA intron (NM_001166373, intron 2 of 7) L1MC3|LINE|L1 -246587 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 209-135 chr18 33547580 33547726 + 2 NA Intergenic L1MC4|LINE|L1 -30566 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 427-50 chr12 53876500 53876881 + 2 NA Intergenic L1ME2|LINE|L1 -62141 NM_017410 3229 Hs.118608 NM_017410 ENSG00000123364 HOXC13 ECTD9|HOX3|HOX3G homeobox C13 protein-coding 325-284 chr2 147209305 147209543 + 2 NA Intergenic L1ME4a|LINE|L1 622367 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 371-243 chr3 88762959 88763257 + 2 NA Intergenic L1PREC2|LINE|L1 -344513 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 293-293 chr4 32802963 32803115 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger 452001 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 241-363 chr7 30299459 30299676 + 2 NA intron (NM_147128, intron 1 of 4) intron (NM_147128, intron 1 of 4) -9677 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 443-277 chr7 52101303 52101707 + 2 NA Intergenic L1PA5|LINE|L1 -708249 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 328-452 chr5 57446659 57446982 + 2 NA Intergenic Intergenic 35991 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 313-117 chr12 115150706 115150879 + 2 NA Intergenic Intergenic -466617 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 396-293 chr5 117117948 117118242 + 2 NA Intergenic Intergenic -297417 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 331-342 chr3 21316991 21317205 + 2 NA Intergenic Intergenic -88628 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 144-108 chr9 97319611 97319740 + 2 NA intron (NM_001348010, intron 11 of 20) intron (NM_001348010, intron 11 of 20) 12016 NM_020893 100499483 Hs.435629 NM_020893 ENSG00000197816 CCDC180 C9orf174 coiled-coil domain containing 180 protein-coding 499-53 chr12 17290973 17291338 + 2 NA Intergenic Intergenic 297923 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 195-202 chr5 124029423 124029582 + 2 NA Intergenic Intergenic 409018 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 311-393 chr4 179213809 179213977 + 2 NA Intergenic Intergenic -1305957 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 262-286 chr3 104640370 104640546 + 2 NA Intergenic L1MA1|LINE|L1 -726255 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 626-12 chr1 238280931 238281352 + 2 NA Intergenic AluSg|SINE|Alu 204876 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 304-148 chr14 76596138 76596315 + 2 NA Intergenic AluY|SINE|Alu -165242 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 321-289 chr2 101611727 101611903 + 2 NA Intergenic AluSg|SINE|Alu -85888 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 397-89 chr14 55254759 55255073 + 2 NA Intergenic Intergenic -16505 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 228-357 chr8 138797573 138797712 + 2 NA intron (NM_152888, intron 11 of 64) L1MB8|LINE|L1 116399 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 296-58 chr10 81776681 81776963 + 2 NA Intergenic Intergenic -98372 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 733-84 chr8 142896571 142897173 + 2 NA Intergenic L1M2|LINE|L1 -17052 NM_000497 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 264-419 chr8 89351163 89351375 + 2 NA Intergenic Intergenic 406442 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 178-37 chr12 85358846 85358955 + 2 NA Intergenic Intergenic 78680 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 554-25 chr10 19973065 19973389 + 2 NA intron (NM_032812, intron 1 of 13) (TA)n|Simple_repeat|Simple_repeat 156795 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 291-430 chr8 39457071 39457298 + 2 NA intron (NR_073423, intron 19 of 21) L1MB3|LINE|L1 65805 NR_073423 1587 Hs.98848 NR_001569 ENSG00000197475 ADAM3A ADAM3|CYRN1|tMDCI ADAM metallopeptidase domain 3A (pseudogene) pseudo 340-525 chr8 49648081 49648416 + 2 NA Intergenic Intergenic -136068 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 627-9 chr10 44075780 44076157 + 2 NA Intergenic L1MD2|LINE|L1 163566 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 166-76 chr3 96349189 96349287 + 2 NA Intergenic Intergenic -10726 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 564-86 chr19 53231528 53231906 + 2 NA Intergenic AluSz|SINE|Alu 18769 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 178-104 chr4 155050352 155050498 + 2 NA Intergenic L1MB7|LINE|L1 -158211 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 607-94 chr3 4485458 4485925 + 2 NA Intergenic Intergenic 7472 NR_108075 100996539 Hs.190365 NR_108075 ITPR1-DT ITPR1-AS1 ITPR1 divergent transcript ncRNA 611-109 chr4 115453043 115453500 + 2 NA Intergenic Intergenic -339651 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 264-222 chr2 179006159 179006342 + 2 NA intron (NM_001316745, intron 2 of 11) intron (NM_001316745, intron 2 of 11) 43887 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 289-489 chr9 85476909 85477137 + 2 NA Intergenic Intergenic 265006 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 490-75 chr12 105857552 105857866 + 2 NA Intergenic Intergenic 150935 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 248-5 chr1 49451984 49452157 + 2 NA intron (NR_046839, intron 2 of 3) L2b|LINE|L2 20015 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 505-201 chr3 146131808 146132258 + 2 NA intron (NM_182943, intron 1 of 19) intron (NM_182943, intron 1 of 19) 29151 NM_182943 5352 Hs.477866 NM_000935 ENSG00000152952 PLOD2 BRKS2|LH2|TLH procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 protein-coding 303-129 chr14 72704706 72704944 + 2 NA intron (NM_001280544, intron 6 of 9) intron (NM_001280544, intron 6 of 9) 187824 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 438-106 chr19 56610196 56610594 + 2 NA intron (NR_163263, intron 2 of 4) L1ME4b|LINE|L1 15093 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 460-20 chr1 221040270 221040721 + 2 NA Intergenic MER53|DNA|hAT -160355 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 133-70 chr6 47029001 47029106 + 2 NA exon (NM_025048, exon 2 of 8) exon (NM_025048, exon 2 of 8) 13279 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 864-28 chr3 114807912 114808464 + 2 NA intron (NM_001348805, intron 4 of 10) L1MB8|LINE|L1 -49081 NM_001164345 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 250-197 chr2 47766837 47767079 + 2 NA Intergenic AluSx|SINE|Alu -16124 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 372-191 chr17 66097736 66097963 + 2 NA intron (NM_001353129, intron 6 of 26) intron (NM_001353129, intron 6 of 26) 94043 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 289-190 chr18 41760109 41760353 + 2 NA Intergenic (CTTTCTC)n|Simple_repeat|Simple_repeat -195003 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 402-305 chr6 139666406 139666678 + 2 NA Intergenic L1M4a1|LINE|L1 -104531 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 402-91 chr14 84667198 84667419 + 2 NA Intergenic L1MA5|LINE|L1 -604624 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 414-166 chr2 144063778 144064032 + 2 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 126838 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 354-124 chr13 95388825 95389051 + 2 NA Intergenic L1MB1|LINE|L1 -44661 NM_001160100 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|HELIX|OSP-L|OSPL claudin 10 protein-coding 208-110 chr2 14875124 14875269 + 2 NA Intergenic L1MEc|LINE|L1 242479 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 339-177 chr15 65811040 65811303 + 2 NA Intergenic L1ME1|LINE|L1 -18878 NM_005848 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 359-251 chr2 150159417 150159710 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 97444 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 234-319 chr5 118710701 118710838 + 2 NA Intergenic L1ME3E|LINE|L1 114581 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 219-11 chr1 96049648 96049828 + 2 NA Intergenic Intergenic 57670 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 235-186 chr2 167745523 167745736 + 2 NA Intergenic L1ME3F|LINE|L1 -73043 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 353-516 chr8 52878220 52878515 + 2 NA Intergenic Intergenic -61541 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 641-70 chr21 28929141 28929645 + 2 NA 3' UTR (NM_001320766, exon 29 of 29) 3' UTR (NM_001320766, exon 29 of 29) -44020 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 187-54 chr15 60278674 60278803 + 2 NA Intergenic Intergenic 119248 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 182-6 chr1 67310454 67310613 + 2 NA intron (NM_001258215, intron 1 of 13) intron (NM_001258215, intron 1 of 13) 3169 NM_001559 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 300-97 chr12 128873559 128873797 + 2 NA intron (NM_001366887, intron 1 of 10) L1ME4b|LINE|L1 20200 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 431-311 chr8 139556228 139556593 + 2 NA Intergenic Intergenic 146713 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 469-268 chr7 68831110 68831405 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 766367 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 616-60 chr17 55899022 55899596 + 2 NA Intergenic Intergenic 148204 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 348-91 chr11 94932027 94932245 + 2 NA Intergenic L1PA16|LINE|L1 41420 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 202-87 chr16 13834015 13834201 + 2 NA Intergenic Intergenic -86049 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 226-108 chr16 3299410 3299585 + 2 NA exon (NM_033208, exon 2 of 2) exon (NM_033208, exon 2 of 2) -5909 NM_153028 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 331-27 chr1 183456755 183457053 + 2 NA Intergenic L1MEi|LINE|L1 15078 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 302-62 chr10 129716742 129716938 + 2 NA intron (NM_002412, intron 3 of 4) intron (NM_002412, intron 3 of 4) 126534 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 437-94 chr16 12166803 12167197 + 2 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 190266 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 333-159 chr15 24726688 24726963 + 2 NA Intergenic Intergenic 51431 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 537-56 chr12 116159563 116160011 + 2 NA intron (NM_015335, intron 2 of 30) intron (NM_015335, intron 2 of 30) -11133 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 421-20 chr1 215458938 215459305 + 2 NA Intergenic Intergenic -108183 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 273-83 chr11 88190482 88190669 + 2 NA Intergenic L1MA8|LINE|L1 14073 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 314-199 chr15 93198647 93198830 + 2 NA Intergenic Intergenic -7328 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 473-309 chrX 99560230 99560674 + 2 NA Intergenic L1PA15|LINE|L1 849821 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 308-320 chr4 35845529 35845809 + 2 NA Intergenic Intergenic 398270 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 272-226 chr2 193100059 193100263 + 2 NA Intergenic L1MA8|LINE|L1 350316 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 311-238 chr2 19885340 19885540 + 2 NA TTS (NR_033875) TTS (NR_033875) 16543 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 167-8 chr1 82450971 82451104 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -452146 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 206-150 chr22 28602737 28602915 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 77039 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 306-340 chr3 194533277 194533539 + 2 NA Intergenic Intergenic 46268 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 265-333 chr6 47885536 47885697 + 2 NA intron (NM_001013732, intron 2 of 2) intron (NM_001013732, intron 2 of 2) 98548 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 372-501 chr8 137883547 137883798 + 2 NA intron (NR_161374, intron 2 of 7) THE1B|LTR|ERVL-MaLR 199873 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 233-288 chr5 26956870 26957025 + 2 NA intron (NM_016279, intron 2 of 11) intron (NM_016279, intron 2 of 11) 81639 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 289-476 chr8 131154507 131154764 + 2 NA Intergenic Intergenic -113726 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 424-152 chr2 225256520 225256939 + 2 NA Intergenic Intergenic -142981 NM_001371273 741-16 chr12 89186960 89187332 + 2 NA Intergenic AluSz|SINE|Alu 165355 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 226-123 chr17 13148768 13148986 + 2 NA Intergenic Intergenic -130813 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 338-420 chr5 30217536 30217745 + 2 NA Intergenic Intergenic 337080 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 465-277 chr7 88037970 88038291 + 2 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 103879 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 246-106 chr13 71827238 71827440 + 2 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 39853 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 459-333 chrX 54792794 54793056 + 2 NA intron (NM_198510, intron 2 of 12) L2a|LINE|L2 5330 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 329-319 chr2 240493216 240493450 + 2 NA intron (NM_017844, intron 11 of 13) AluSx3|SINE|Alu -36633 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 170-19 chr10 24146098 24146227 + 2 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -62629 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 301-54 chr10 124101095 124101256 + 2 NA Intergenic MLT2B4|LTR|ERVL -7577 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 258-430 chr9 113010524 113010690 + 2 NA intron (NM_001101338, intron 2 of 4) L1MA8|LINE|L1 1585 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 206-185 chr4 85393384 85393546 + 2 NA Intergenic LTR86A1|LTR|ERVL -81685 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 311-101 chr12 44737500 44737704 + 2 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 138059 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 265-259 chr4 34027865 34028061 + 2 NA intron (NR_125902, intron 1 of 4) MLT1N2|LTR|ERVL-MaLR 11930 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 544-59 chr12 118828322 118828763 + 2 NA intron (NR_134997, intron 2 of 2) intron (NR_134997, intron 2 of 2) 4994 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 137-49 chr2 125093922 125094011 + 2 NA Intergenic Intergenic 1024019 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 320-508 chr7 30032974 30033147 + 2 NA intron (NM_001363473, intron 1 of 12) intron (NM_001363473, intron 1 of 12) 4648 NM_001363473 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 341-438 chr5 92056616 92056848 + 2 NA Intergenic L1MC1|LINE|L1 -673415 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 275-195 chr2 72043598 72043759 + 2 NA Intergenic L1MEh|LINE|L1 104184 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 599-10 chr1 222769687 222770088 + 2 NA Intergenic MER106B|DNA|hAT-Charlie 30203 NM_001324080 400823 Hs.697608 NM_207468 ENSG00000197520 FAM177B - family with sequence similarity 177 member B protein-coding 329-434 chr5 2131856 2132060 + 2 NA Intergenic Intergenic 180243 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 492-23 chr10 49297013 49297411 + 2 NA intron (NR_108038, intron 1 of 1) intron (NR_108038, intron 1 of 1) 1681 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 259-93 chr12 130128809 130129005 + 2 NA Intergenic L2a|LINE|L2 32771 NR_033834 440119 Hs.288262 NR_033834 ENSG00000250208 FZD10-AS1 FZD10-DT FZD10 antisense divergent transcript ncRNA 497-157 chr20 52315068 52315479 + 2 NA Intergenic MER20|DNA|hAT-Charlie -123288 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 274-151 chr16 56180175 56180379 + 2 NA intron (NR_027078, intron 2 of 4) L1MB3|LINE|L1 10817 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 479-50 chr13 86539652 86539921 + 2 NA Intergenic Intergenic -372134 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 278-36 chr10 64145267 64145506 + 2 NA Intergenic Intergenic -623496 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 331-114 chr12 34595484 34595675 + 2 NA Intergenic ALR/Alpha|Satellite|centr 573083 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 425-72 chr12 71974564 71974959 + 2 NA intron (NM_173353, intron 6 of 10) intron (NM_173353, intron 6 of 10) 35916 NM_173353 121278 Hs.736576 NM_173353 ENSG00000139287 TPH2 ADHD7|NTPH tryptophan hydroxylase 2 protein-coding 251-255 chr3 177227862 177228033 + 2 NA Intergenic AluSq2|SINE|Alu -30465 NM_001321194 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 468-334 chr9 74911700 74912059 + 2 NA Intergenic L1M2|LINE|L1 -23958 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 507-143 chr2 199172754 199173192 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 284966 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 245-160 chr17 60502002 60502241 + 2 NA intron (NM_006380, intron 1 of 12) FRAM|SINE|Alu 24119 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 259-374 chr7 93549183 93549413 + 2 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 10512 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 315-332 chr4 33364111 33364349 + 2 NA Intergenic Intergenic 675663 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 351-5 chr1 71703055 71703242 + 2 NA intron (NM_173808, intron 3 of 6) L1MEc|LINE|L1 133864 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 329-378 chr3 105609954 105610143 + 2 NA Intergenic Intergenic 243139 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 237-162 chr2 7742522 7742690 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 157049 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 571-48 chr14 74657997 74658341 + 2 NA Intergenic Intergenic -45932 NM_000428 4053 Hs.512776 NM_000428 ENSG00000119681 LTBP2 C14orf141|GLC3D|LTBP3|MSPKA|MSTP031|WMS3 latent transforming growth factor beta binding protein 2 protein-coding 203-119 chr2 115302756 115302926 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -6396 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 332-371 chr4 41311434 41311624 + 2 NA Intergenic LTR47A|LTR|ERVL -48078 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 239-411 chr8 106111711 106111937 + 2 NA Intergenic Intergenic -51321 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 206-66 chr14 60428129 60428311 + 2 NA Intergenic L1MA4A|LINE|L1 57843 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 280-425 chr8 128503488 128503641 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 61115 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 540-163 chr4 153865298 153865824 + 2 NA Intergenic Intergenic -76478 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 394-297 chr7 15801489 15801870 + 2 NA Intergenic Intergenic 113301 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 442-226 chr5 27301597 27301982 + 2 NA Intergenic L1PA5|LINE|L1 -170503 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 394-277 chr5 109216164 109216549 + 2 NA Intergenic L1ME2z|LINE|L1 110013 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 132-84 chr8 62701626 62701716 + 2 NA intron (NM_001304533, intron 3 of 6) intron (NM_001304533, intron 3 of 6) -276190 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 364-238 chr2 204459580 204459870 + 2 NA Intergenic Intergenic -85750 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 252-127 chr15 51388244 51388467 + 2 NA intron (NM_001330297, intron 4 of 9) intron (NM_001330297, intron 4 of 9) 11109 NM_001330297 342035 Hs.526441 NM_181789 ENSG00000186417 GLDN CLOM|COLM|CRG-L2|CRGL2|LCCS11|UNC-112 gliomedin protein-coding 329-624 chrX 85439482 85439646 + 2 NA Intergenic L1PA10|LINE|L1 -59899 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 474-151 chr2 155747420 155747784 + 2 NA Intergenic Intergenic 507329 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 113-22 chr16 3855054 3855140 + 2 NA intron (NM_004380, intron 1 of 30) L1MC4|LINE|L1 25023 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 291-302 chr3 170579415 170579692 + 2 NA intron (NM_020949, intron 1 of 7) intron (NM_020949, intron 1 of 7) 6522 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 567-164 chr7 3904320 3904690 + 2 NA intron (NM_152744, intron 5 of 44) AluJr|SINE|Alu -225180 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 335-115 chr12 9012959 9013209 + 2 NA Intergenic L1MA3|LINE|L1 23459 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 766-50 chr3 108446475 108447050 + 2 NA intron (NM_014981, intron 22 of 41) L1MA9|LINE|L1 82560 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 266-167 chr2 8359004 8359178 + 2 NA Intergenic Intergenic -30672 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 291-416 chr7 64060771 64060962 + 2 NA intron (NM_001159522, intron 1 of 3) L1M1|LINE|L1 15432 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 257-212 chr2 148836728 148836894 + 2 NA Intergenic L1MB8|LINE|L1 -38416 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 332-248 chr2 73555690 73556008 + 2 NA intron (NM_015120, intron 13 of 22) L1ME3C|LINE|L1 86573 NM_003960 9027 Hs.14637 NM_003960 ENSG00000144035 NAT8 ATase2|CCNAT|CML1|GLA|Hcml1|TSC501|TSC510 N-acetyltransferase 8 (putative) protein-coding 348-75 chr11 21295417 21295745 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 625995 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 431-18 chr1 158851903 158852182 + 2 NA Intergenic L1PA16|LINE|L1 20691 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 255-175 chr19 12250391 12250637 + 2 NA Intergenic Intergenic 44098 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 384-296 chr5 83912084 83912452 + 2 NA Intergenic Intergenic -191413 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 822-35 chr2 195784140 195784668 + 2 NA intron (NM_018897, intron 58 of 64) L1MC1|LINE|L1 127178 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 209-116 chr16 31417335 31417531 + 2 NA intron (NM_001318185, intron 20 of 29) L1M5|LINE|L1 10927 NM_005205 1339 Hs.250760 NM_005205 ENSG00000156885 COX6A2 COX6AH|COXVIAH cytochrome c oxidase subunit 6A2 protein-coding 1212 chr1 76849390 76850189 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -17691 NM_001320274 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 278-237 chr2 177806432 177806602 + 2 NA intron (NM_001077197, intron 10 of 20) intron (NM_001077197, intron 10 of 20) 82239 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 384-226 chr3 74606919 74607111 + 2 NA Intergenic Intergenic -85875 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 324-320 chr21 15318044 15318214 + 2 NA Intergenic MER53|DNA|hAT -253129 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 281-258 chr20 43805096 43805297 + 2 NA Intergenic L1MB7|LINE|L1 -78194 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 356-441 chr7 17998932 17999134 + 2 NA Intergenic LTR45|LTR|ERV1 28813 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 302-71 chr11 34899761 34900049 + 2 NA intron (NM_015957, intron 1 of 6) HUERS-P3-int|LTR|ERV1 -16225 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 255-75 chr12 38598860 38599107 + 2 NA Intergenic L1MB1|LINE|L1 282209 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 471-200 chr4 136238539 136238906 + 2 NA Intergenic L1MA7|LINE|L1 -325042 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 381-244 chr3 34160897 34161212 + 2 NA Intergenic Intergenic 362424 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 345-12 chr1 92409013 92409291 + 2 NA Intergenic L2b|LINE|L2 74802 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 292-151 chr15 57495543 57495802 + 2 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -96232 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 208-133 chr2 169072941 169073119 + 2 NA intron (NM_001142270, intron 1 of 5) intron (NM_001142270, intron 1 of 5) 455 NM_001142270 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 295-476 chr8 110259354 110259596 + 2 NA Intergenic Intergenic -283704 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 336-339 chr21 28904468 28904770 + 2 NA Intergenic Intergenic -19246 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 491-110 chr2 27859748 27860136 + 2 NA intron (NM_022128, intron 1 of 7) intron (NM_022128, intron 1 of 7) -28767 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 272-262 chr3 30533975 30534219 + 2 NA Intergenic L1M6|LINE|L1 15229 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 306-216 chr19 43843746 43844001 + 2 NA intron (NM_181845, intron 6 of 6) Charlie1a|DNA|hAT-Charlie 16552 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 254-183 chr2 66606492 66606645 + 2 NA intron (NR_110156, intron 1 of 5) intron (NR_110156, intron 1 of 5) 32538 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 385-60 chr12 12108399 12108611 + 2 NA Intergenic L1M4c|LINE|L1 -3447 NR_036052 100302285 NR_036052 ENSG00000284378 MIR1244-1 MIR1244|MIRN1244|hsa-mir-1244|hsa-mir-1244-1 microRNA 1244-1 ncRNA 220-302 chr5 137974653 137974784 + 2 NA intron (NM_001101801, intron 9 of 21) intron (NM_001101801, intron 9 of 21) -58056 NR_037900 100130172 Hs.616629 NR_037900 LOC100130172 - uncharacterized LOC100130172 ncRNA 315-286 chr21 15474411 15474665 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -255396 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 274-25 chr1 219123784 219124026 + 2 NA intron (NR_038845, intron 3 of 4) intron (NR_038845, intron 3 of 4) 49883 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 336-424 chr4 88677861 88678144 + 2 NA exon (NM_014606, exon 19 of 26) exon (NM_014606, exon 19 of 26) 19827 NM_153757 266812 Hs.12554 NM_153757 ENSG00000177432 NAP1L5 DRLM nucleosome assembly protein 1 like 5 protein-coding 550-245 chr9 101631906 101632272 + 2 NA intron (NM_133445, intron 3 of 8) L2c|LINE|L2 -37120 NM_147180 5535 Hs.151167 NM_147180 ENSG00000188386 PPP3R2 PPP3RL protein phosphatase 3 regulatory subunit B, beta protein-coding 306-170 chr15 86356418 86356711 + 2 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -39596 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 265-65 chr11 99522461 99522665 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -33582 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 254-451 chrX 101887950 101888109 + 2 NA intron (NM_001282401, intron 6 of 8) MER5A|DNA|hAT-Charlie -30452 NR_159739 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 431-29 chr1 238134733 238134991 + 2 NA Intergenic Intergenic -243940 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 215-231 chr4 92791337 92791495 + 2 NA intron (NM_001286838, intron 2 of 14) MIR|SINE|MIR 487017 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 272-347 chr5 64283208 64283418 + 2 NA intron (NM_001113561, intron 5 of 7) L1PA13|LINE|L1 117470 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 325-427 chr5 13719197 13719438 + 2 NA intron (NM_001369, intron 71 of 78) intron (NM_001369, intron 71 of 78) 225163 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 420-176 chr22 45596694 45596969 + 2 NA intron (NM_006486, intron 16 of 16) intron (NM_006486, intron 16 of 16) 8816 NR_131244 100506737 Hs.517692 NR_131244 ENSG00000238120 LINC01589 TCONS_00029353 long intergenic non-protein coding RNA 1589 ncRNA 662-74 chr5 60273698 60274270 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 98679 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 509-206 chr5 154290607 154290933 + 2 NA intron (NM_198321, intron 1 of 11) MIR3|SINE|MIR -56336 NR_031626 100302181 NR_031626 ENSG00000221430 MIR1294 MIRN1294|hsa-mir-1294|mir-1294 microRNA 1294 ncRNA 352-302 chr22 40456261 40456465 + 2 NA intron (NM_020831, intron 4 of 14) MER57B2|LTR|ERV1 7077 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 308-437 chr6 145509877 145510118 + 2 NA Intergenic L1PA15-16|LINE|L1 176880 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 327-338 chr3 116147224 116147479 + 2 NA intron (NM_001318915, intron 1 of 8) L3b|LINE|CR1 -212673 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 515-219 chr5 127432677 127432970 + 2 NA intron (NM_001256545, intron 13 of 24) intron (NM_001256545, intron 13 of 24) -84817 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 145-8 chr1 247897075 247897186 + 2 NA TTS (NM_001001957) TTS (NM_001001957) 1543 NM_001001957 343171 Hs.269151 NM_001001957 ENSG00000238243 OR2W3 OR2W3P|OR2W8P|OST718 olfactory receptor family 2 subfamily W member 3 protein-coding 464-96 chr18 14109757 14110105 + 2 NA intron (NM_145287, intron 2 of 2) L1PB|LINE|L1 22504 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 162-66 chr2 194007387 194007493 + 2 NA Intergenic Intergenic -336829 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 246-72 chr11 77001657 77001813 + 2 NA intron (NM_001300953, intron 6 of 9) L1MDa|LINE|L1 -32663 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 282-340 chr4 55104423 55104640 + 2 NA intron (NM_002253, intron 13 of 29) intron (NM_002253, intron 13 of 29) 21064 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 359-154 chr15 59840189 59840514 + 2 NA Intergenic Intergenic -151031 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 534-222 chr6 116741109 116741580 + 2 NA 3' UTR (NM_001366307, exon 15 of 15) 3' UTR (NM_001366307, exon 15 of 15) 24375 NM_001085480 221303 Hs.126712 NM_001085480 ENSG00000183807 FAM162B C6orf189|bA86F4.2 family with sequence similarity 162 member B protein-coding 235-60 chr11 25698991 25699158 + 2 NA Intergenic L1PA15-16|LINE|L1 -490049 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 349-512 chr8 136243042 136243249 + 2 NA Intergenic Intergenic -287653 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 221-193 chr3 98921932 98922095 + 2 NA Intergenic L3|LINE|CR1 -20318 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 232-271 chr4 71130299 71130456 + 2 NA Intergenic AluJr|SINE|Alu -56882 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 523-145 chr2 189987604 189987978 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 74938 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 258-333 chr5 122269139 122269322 + 2 NA Intergenic L1PB1|LINE|L1 -42461 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 293-132 chr15 67904682 67904872 + 2 NA Intergenic L1MEg|LINE|L1 -64732 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 335-119 chr12 17558383 17558582 + 2 NA Intergenic Intergenic 30596 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 209-310 chr8 22334209 22334366 + 2 NA intron (NM_001330480, intron 20 of 21) L1MB7|LINE|L1 -32991 NM_001351655 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 347-31 chr1 219025666 219025878 + 2 NA intron (NR_031644, intron 6 of 6) AluSx1|SINE|Alu -107261 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 447-155 chr20 56098339 56098639 + 2 NA Intergenic Intergenic -92970 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 282-171 chr17 69269768 69269941 + 2 NA intron (NM_018672, intron 21 of 37) L1MB8|LINE|L1 -25039 NM_080282 10349 Hs.25377 NM_080282 ENSG00000154263 ABCA10 EST698739 ATP binding cassette subfamily A member 10 protein-coding 280-140 chr15 83240307 83240569 + 2 NA Intergenic L1P1|LINE|L1 -32615 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 352-555 chr9 14382371 14382717 + 2 NA intron (NM_001369458, intron 1 of 11) intron (NM_001369458, intron 1 of 11) 16439 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 498-141 chr2 213893215 213893673 + 2 NA intron (NR_047660, intron 10 of 14) L1MA6|LINE|L1 135377 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 426-32 chr10 83826396 83826803 + 2 NA Intergenic Intergenic -149510 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 241-59 chr11 25638646 25638805 + 2 NA Intergenic LTR33|LTR|ERVL -550398 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 296-435 chr7 37633392 37633587 + 2 NA Intergenic L1MD1|LINE|L1 -50277 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 598-52 chr16 75770775 75771202 + 2 NA Intergenic L1M4|LINE|L1 -44498 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 500-286 chr8 51881618 51882084 + 2 NA intron (NM_001363193, intron 1 of 5) intron (NM_001363193, intron 1 of 5) 17185 NM_001363193 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 357-195 chr2 51114496 51114706 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 82000 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 202-186 chr4 54892038 54892184 + 2 NA Intergenic Intergenic 233484 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 256-172 chr18 5214513 5214735 + 2 NA Intergenic Intergenic -16872 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 361-462 chr8 128958238 128958577 + 2 NA intron (NR_145483, intron 2 of 3) intron (NR_145483, intron 2 of 3) 7594 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 363-200 chr19 58113960 58114200 + 2 NA intron (NR_027135, intron 1 of 1) AluSg|SINE|Alu 4346 NR_027135 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 720-35 chr16 87215226 87215787 + 2 NA intron (NR_110939, intron 2 of 2) intron (NR_110939, intron 2 of 2) 3391 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 240-52 chr10 60599511 60599655 + 2 NA intron (NM_001204403, intron 2 of 43) L2a|LINE|L2 -26627 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 347-172 chr16 82320058 82320324 + 2 NA Intergenic L1M2|LINE|L1 -149967 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 301-237 chr2 188555544 188555761 + 2 NA intron (NM_016315, intron 7 of 11) L1MA4A|LINE|L1 234471 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 402-83 chr14 61857989 61858338 + 2 NA intron (NM_001367656, intron 1 of 7) (A)n|Simple_repeat|Simple_repeat 45460 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 545-126 chr2 225476603 225477061 + 2 NA intron (NM_001371273, intron 3 of 7) MER63D|DNA|hAT-Blackjack 75946 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 439-121 chr2 2175060 2175427 + 2 NA intron (NM_015025, intron 2 of 24) intron (NM_015025, intron 2 of 24) -143989 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 436-243 chr5 66937457 66937779 + 2 NA intron (NM_015183, intron 3 of 27) intron (NM_015183, intron 3 of 27) -21455 NM_001290226 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 281-105 chr13 79849768 79849958 + 2 NA Intergenic Intergenic -22723 NR_120413 101927195 Hs.342412 NR_120413 ENSG00000229175 LINC00382 TCONS_00021500 long intergenic non-protein coding RNA 382 ncRNA 537-43 chr11 63442951 63443332 + 2 NA Intergenic Intergenic 48026 NM_001146728 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 273-382 chr6 28432012 28432223 + 2 NA TTS (NM_001012455) TTS (NM_001012455) 11374 NM_001012455 222696 Hs.721841 NM_001012455 ENSG00000187987 ZSCAN23 ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1 zinc finger and SCAN domain containing 23 protein-coding 252-458 chrX 58328174 58328381 + 2 NA Intergenic ALR/Alpha|Satellite|centr -417644 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 226-104 chr15 78189940 78190070 + 2 NA intron (NM_015162, intron 5 of 13) L1MEf|LINE|L1 40643 NM_005530 3419 Hs.591110 NM_005530 ENSG00000166411 IDH3A - isocitrate dehydrogenase (NAD(+)) 3 alpha protein-coding 451-137 chr22 47297733 47298096 + 2 NA Intergenic Intergenic -47657 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 256-136 chr15 57044919 57045097 + 2 NA intron (NM_001322164, intron 3 of 19) intron (NM_001322164, intron 3 of 19) 125563 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 214-192 chr21 27508244 27508450 + 2 NA Intergenic Intergenic -214032 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 118-10 chr11 46807017 46807098 + 2 NA intron (NM_001008938, intron 8 of 43) Tigger17a|DNA|TcMar-Tigger 39223 NM_001008938 9793 Hs.201253 NM_014756 ENSG00000175216 CKAP5 CHTOG|MSPS|TOG|TOGp|ch-TOG cytoskeleton associated protein 5 protein-coding 391-302 chr6 48967146 48967488 + 2 NA Intergenic Intergenic 495936 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 306-118 chr12 131517332 131517533 + 2 NA Intergenic L1M3f|LINE|L1 130689 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 360-179 chr18 9122193 9122429 + 2 NA intron (NR_110772, intron 2 of 2) intron (NR_110772, intron 2 of 2) 14409 NR_110772 101927275 Hs.656442 NR_110771 ENSG00000266053 NDUFV2-AS1 - NDUFV2 antisense RNA 1 ncRNA 342-491 chr7 81201384 81201570 + 2 NA Intergenic L1MC3|LINE|L1 -279088 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 565-9 chr1 182407617 182408020 + 2 NA non-coding (NR_034131, exon 1 of 4) non-coding (NR_034131, exon 1 of 4) 197 NR_034131 388719 Hs.508989 NM_001010899 ENSG00000203729 LINC00272 C1orf120|NCRNA00272 long intergenic non-protein coding RNA 272 ncRNA 255-314 chr5 7551606 7551741 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 155535 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 263-254 chr3 39822640 39822866 + 2 NA intron (NM_001284424, intron 1 of 15) L1MA5A|LINE|L1 13093 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 421-258 chr6 53112622 53113005 + 2 NA Intergenic Intergenic 36028 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 401-142 chr19 24318167 24318518 + 2 NA Intergenic ALR/Alpha|Satellite|centr -154895 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 298-399 chr6 62138900 62139176 + 2 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 147187 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 410-145 chr2 126273175 126273573 + 2 NA Intergenic Intergenic -155389 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 305-516 chr7 104081174 104081463 + 2 NA Intergenic L1MC5a|LINE|L1 -91660 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 453-272 chr8 19644877 19645188 + 2 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) 37551 NM_018371 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 802-69 chr8 119924154 119924850 + 2 NA intron (NM_001283012, intron 1 of 6) HAL1b|LINE|L1 50780 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 746-44 chr2 203848759 203849338 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -18723 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 485-132 chr2 64755491 64755831 + 2 NA Intergenic Intergenic -101748 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 370-258 chr2 190540733 190541030 + 2 NA Intergenic L1MA4|LINE|L1 -6159 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 310-240 chr2 70674132 70674342 + 2 NA TTS (NM_001185055) TTS (NM_001185055) 93478 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 345-177 chr15 80585186 80585421 + 2 NA intron (NM_014862, intron 17 of 18) intron (NM_014862, intron 17 of 18) 4200 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 359-215 chr2 4394355 4394635 + 2 NA Intergenic L1MA4|LINE|L1 261727 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 381-155 chr18 70810318 70810631 + 2 NA Intergenic AluJo|SINE|Alu -159520 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 530-127 chr2 67511615 67512097 + 2 NA Intergenic Intergenic 114523 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 316-459 chr5 131326514 131326702 + 2 NA intron (NM_020240, intron 2 of 5) L1MD|LINE|L1 62599 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 385-117 chr15 81462394 81462666 + 2 NA Intergenic L1M2|LINE|L1 -88317 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 349-127 chr12 41892338 41892559 + 2 NA Intergenic Intergenic 128259 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 417-5 chr1 56742147 56742537 + 2 NA intron (NM_001004303, intron 11 of 19) intron (NM_001004303, intron 11 of 19) 77062 NM_001004303 199920 Hs.437655 NM_001004303 ENSG00000187889 FYB2 ARAP|C1orf168 FYN binding protein 2 protein-coding 603-34 chr12 108591280 108591743 + 2 NA 3' UTR (NM_181724, exon 2 of 2) 3' UTR (NM_181724, exon 2 of 2) 6573 NM_181724 338773 Hs.449718 NM_181724 ENSG00000183160 TMEM119 OBIF transmembrane protein 119 protein-coding 257-88 chr12 25461785 25461956 + 2 NA Intergenic MER117|DNA|hAT-Charlie 91413 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 213-18 chr1 189269333 189269492 + 2 NA Intergenic LTR25-int|LTR|ERV1 1206598 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 247-151 chr17 11082196 11082386 + 2 NA Intergenic Intergenic -158922 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 347-46 chr10 32153290 32153556 + 2 NA Intergenic L1MDa|LINE|L1 -96998 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 600-97 chr5 6097077 6097575 + 2 NA Intergenic L1ME1|LINE|L1 239966 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 284-84 chr12 43365435 43365589 + 2 NA intron (NM_025003, intron 37 of 38) L1M4b|LINE|L1 186691 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 205-210 chr4 131655709 131655858 + 2 NA Intergenic Intergenic -109055 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 510-157 chr2 157700988 157701423 + 2 NA Intergenic L1MA4A|LINE|L1 -72341 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 399-147 chr2 77014915 77015193 + 2 NA intron (NR_146416, intron 1 of 1) MLT2C1|LTR|ERVL 29089 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 253-202 chr2 166805624 166805796 + 2 NA Intergenic Intergenic -82777 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 208-281 chr9 29296495 29296658 + 2 NA Intergenic Intergenic -82975 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 594-99 chr4 54414493 54414891 + 2 NA Intergenic L1MEd|LINE|L1 81800 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 497-258 chr7 32240915 32241293 + 2 NA intron (NM_001322059, intron 1 of 17) L2a|LINE|L2 58224 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 288-245 chr22 29194158 29194333 + 2 NA Intergenic MER117|DNA|hAT-Charlie -11651 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 423-305 chr8 138795653 138796022 + 2 NA intron (NM_152888, intron 12 of 64) MamRep605|LTR?|LTR? 118204 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 327-417 chr5 135976088 135976382 + 2 NA Intergenic Intergenic -21252 NM_002302 3950 Hs.512580 NM_002302 ENSG00000145826 LECT2 chm-II|chm2 leukocyte cell derived chemotaxin 2 protein-coding 419-181 chr3 55375120 55375378 + 2 NA Intergenic MIRb|SINE|MIR 106149 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 339-87 chr11 20265584 20265876 + 2 NA Intergenic Intergenic -97955 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 381-47 chr10 44672172 44672411 + 2 NA Intergenic L1MA7|LINE|L1 -239025 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 342-222 chr2 15021816 15021992 + 2 NA Intergenic Intergenic 389187 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 204-105 chr15 79632527 79632682 + 2 NA Intergenic Intergenic 200088 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 395-136 chr17 54129435 54129644 + 2 NA Intergenic L1PA6|LINE|L1 306612 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 509-76 chr15 27767804 27768198 + 2 NA intron (NM_001300984, intron 22 of 22) intron (NM_001300984, intron 22 of 22) 331314 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 469-145 chr2 189535826 189536185 + 2 NA Intergenic L2a|LINE|L2 44806 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 147-57 chr3 51769200 51769297 + 2 NA Intergenic L1M4a2|LINE|L1 9989 NM_001143833 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 238-311 chr5 179083375 179083574 + 2 NA 3' UTR (NM_014594, exon 5 of 5) 3' UTR (NM_014594, exon 5 of 5) 23101 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 362-320 chr4 97388930 97389196 + 2 NA intron (NR_102713, intron 1 of 5) L1MCc|LINE|L1 22137 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 320-503 chr7 4135723 4135985 + 2 NA intron (NM_001079653, intron 2 of 19) intron (NM_001079653, intron 2 of 19) -1017 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 361-257 chr20 59229650 59229978 + 2 NA intron (NM_178457, intron 3 of 4) intron (NM_178457, intron 3 of 4) 38794 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 235-358 chr8 86645684 86645907 + 2 NA intron (NM_019098, intron 8 of 17) intron (NM_019098, intron 8 of 17) 97880 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 132-67 chr6 24349279 24349389 + 2 NA intron (NM_016356, intron 2 of 9) L2c|LINE|L2 -7569 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 520-309 chr8 127468553 127468914 + 2 NA intron (NR_024393, intron 4 of 4) Tigger17|DNA|TcMar-Tigger 13406 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 275-220 chr20 7680829 7681016 + 2 NA Intergenic Intergenic 259536 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 395-76 chr12 94456854 94457187 + 2 NA intron (NM_001368039, intron 1 of 16) intron (NM_001368039, intron 1 of 16) 2847 NM_001346457 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 114-42 chr3 121472440 121472547 + 2 NA intron (NM_199420, intron 21 of 29) intron (NM_199420, intron 21 of 29) 73495 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 225-142 chr2 3055858 3056018 + 2 NA intron (NR_110228, intron 3 of 6) L1PA13|LINE|L1 70088 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 141-31 chr16 82689364 82689442 + 2 NA TTS (NR_107025) TTS (NR_107025) 472 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 316-519 chr7 64236437 64236674 + 2 NA intron (NM_153363, intron 1 of 4) AluSq2|SINE|Alu 8081 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 348-476 chr6 164264835 164265047 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE 557122 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 260-176 chr18 884512 884735 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -20248 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 180-25 chr11 28224707 28224871 + 2 NA intron (NM_001113528, intron 4 of 6) intron (NM_001113528, intron 4 of 6) 116401 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 351-306 chr3 89890225 89890569 + 2 NA Intergenic Intergenic 782776 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 431-152 chr2 184100560 184100828 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -278281 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 219-33 chr10 49203024 49203214 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -14728 NM_001288742 170371 Hs.385493 NM_001010863 ENSG00000204161 TMEM273 C10orf128 transmembrane protein 273 protein-coding 185-78 chr17 69668484 69668610 + 2 NA intron (NR_109972, intron 3 of 4) L1M5|LINE|L1 74560 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 610-109 chr3 3312435 3312911 + 2 NA Intergenic L1M5|LINE|L1 -132956 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 354-337 chr4 83680551 83680758 + 2 NA Intergenic MIRb|SINE|MIR 144546 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 193-14 chr1 152568253 152568377 + 2 NA Intergenic L1M4|LINE|L1 -1535 NM_178435 353145 Hs.490208 NM_178435 ENSG00000185966 LCE3E LEP17 late cornified envelope 3E protein-coding 233-371 chr8 79977237 79977421 + 2 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) 52930 NM_014018 28957 Hs.521124 NM_014018 ENSG00000147586 MRPS28 HSPC007|MRP-S28|MRP-S35|MRPS35 mitochondrial ribosomal protein S28 protein-coding 311-21 chr1 112178835 112179057 + 2 NA Intergenic Intergenic 188410 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 836-31 chr2 79422264 79422959 + 2 NA Intergenic Intergenic 78233 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 368-378 chr5 152248531 152248774 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 156627 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 295-304 chr3 110986470 110986647 + 2 NA Intergenic L1MA3|LINE|L1 83401 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 351-405 chr5 171582077 171582294 + 2 NA Intergenic MIRb|SINE|MIR 162538 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 200-154 chr20 16851737 16851906 + 2 NA Intergenic L1PB1|LINE|L1 103468 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 414-286 chr6 79102756 79103095 + 2 NA Intergenic Intergenic -24671 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 342-327 chr3 102884604 102884785 + 2 NA Intergenic Intergenic 449679 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 284-440 chr9 71121931 71122143 + 2 NA promoter-TSS (NM_001366153) promoter-TSS (NM_001366153) -416 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 309-201 chr17 48627318 48627610 + 2 NA Intergenic Intergenic -1106 NM_024017 3219 Hs.463350 NM_024017 ENSG00000170689 HOXB9 HOX-2.5|HOX2|HOX2E homeobox B9 protein-coding 651-93 chr4 67983800 67984400 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 13339 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 249-288 chr4 35375200 35375357 + 2 NA Intergenic Intergenic 868661 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 693-89 chr6 130512646 130513192 + 2 NA Intergenic Intergenic 75802 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 280-192 chr2 52048823 52049072 + 2 NA intron (NR_135237, intron 7 of 10) L1M4c|LINE|L1 -321701 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 362-199 chr18 39899241 39899426 + 2 NA Intergenic Intergenic 57624 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 533-109 chr2 145486009 145486443 + 2 NA Intergenic Intergenic 818259 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 314-390 chr3 121012071 121012307 + 2 NA intron (NR_145517, intron 3 of 8) L1MB8|LINE|L1 -37451 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 523-22 chr10 23181498 23181951 + 2 NA Intergenic Intergenic -10588 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 633-127 chr9 92299922 92300484 + 2 NA non-coding (NR_046106, exon 14 of 17) non-coding (NR_046106, exon 14 of 17) -6447 NM_013417 3376 Hs.445403 NM_002161 ENSG00000196305 IARS GRIDHH|IARS1|ILERS|ILRS|IRS|PRO0785 isoleucyl-tRNA synthetase protein-coding 440-134 chr2 195338295 195338727 + 2 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -318447 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 324-292 chr2 188025860 188026150 + 2 NA Intergenic L1PB1|LINE|L1 261686 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 222-15 chr1 177766808 177766989 + 2 NA Intergenic L1MEi|LINE|L1 66374 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 490-109 chr17 52642105 52642419 + 2 NA Intergenic Intergenic -219859 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 359-121 chr12 80364184 80364467 + 2 NA intron (NM_001368062, intron 56 of 62) intron (NM_001368062, intron 56 of 62) -79910 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 349-198 chr16 62949599 62949821 + 2 NA Intergenic L2b|LINE|L2 -913272 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 508-214 chr6 145188981 145189378 + 2 NA Intergenic MER21C|LTR|ERVL 497698 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 193-201 chr8 118773585 118773697 + 2 NA Intergenic Intergenic -151678 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 401-68 chr12 71021254 71021542 + 2 NA Intergenic Intergenic -100660 NM_002849 5801 Hs.506076 NM_002849 ENSG00000153233 PTPRR EC-PTP|PCPTP1|PTP-SL|PTPBR7|PTPRQ protein tyrosine phosphatase receptor type R protein-coding 267-403 chr7 85735501 85735665 + 2 NA Intergenic L1PBb|LINE|L1 314461 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 258-250 chr3 32172434 32172673 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 66042 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 344-507 chr8 129818267 129818463 + 2 NA Intergenic L1M3c|LINE|L1 -31741 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 375-287 chr4 58930915 58931241 + 2 NA Intergenic L1PA2|LINE|L1 -53204 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 238-285 chr5 13216560 13216746 + 2 NA Intergenic Intergenic -183767 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 275-83 chr12 34589008 34589186 + 2 NA Intergenic ALR/Alpha|Satellite|centr 566601 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 527-224 chr6 76028356 76028781 + 2 NA intron (NM_001563, intron 4 of 16) AluY|SINE|Alu 44094 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 333-78 chr11 19893677 19893852 + 2 NA intron (NM_182964, intron 6 of 37) intron (NM_182964, intron 6 of 37) -128792 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 236-132 chr16 8446641 8446831 + 2 NA Intergenic L1MEc|LINE|L1 143102 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 196-81 chr15 27099473 27099588 + 2 NA intron (NM_001270873, intron 3 of 5) MLT1B|LTR|ERVL-MaLR 61789 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 341-146 chr14 55617002 55617271 + 2 NA intron (NR_073129, intron 4 of 45) intron (NR_073129, intron 4 of 45) 36929 NR_073129 3895 Hs.509414 NM_004986 ENSG00000126777 KTN1 CG1|KNT|MU-RMS-40.19 kinectin 1 protein-coding 586-94 chr22 34659219 34659591 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 338511 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 559-169 chr7 26517535 26518067 + 2 NA intron (NR_148500, intron 5 of 5) intron (NR_148500, intron 5 of 5) 21024 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 335-195 chr17 33637076 33637384 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -103470 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 263-306 chr4 171935524 171935684 + 2 NA intron (NM_001034845, intron 2 of 12) AluJo|SINE|Alu -121997 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 256-48 chr10 70628556 70628692 + 2 NA Intergenic L1MB7|LINE|L1 -25836 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 343-455 chr6 1190407 1190685 + 2 NA Intergenic Intergenic -89214 NR_027115 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 410-211 chr4 35941637 35941891 + 2 NA Intergenic Intergenic 302175 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 430-247 chr5 93083429 93083856 + 2 NA Intergenic Intergenic 487701 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 308-262 chr20 10194928 10195192 + 2 NA intron (NR_040710, intron 2 of 4) L2a|LINE|L2 -23738 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 455-115 chr19 53827490 53827737 + 2 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -3210 NM_001277126 91662 Hs.631573 NM_033297 ENSG00000142405 NLRP12 CLR19.3|FCAS2|NALP12|PAN6|PYPAF7|RNO|RNO2 NLR family pyrin domain containing 12 protein-coding 277-184 chr2 38658859 38659025 + 2 NA Intergenic MIRb|SINE|MIR -7172 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 164-35 chr14 32925399 32925556 + 2 NA Intergenic Intergenic -13402 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 771-37 chr19 44159456 44159950 + 2 NA 3' UTR (NM_001144824, exon 6 of 6) 3' UTR (NM_001144824, exon 6 of 6) -5359 NM_001146220 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 334-380 chr4 77465382 77465646 + 2 NA Intergenic Intergenic -46239 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 266-84 chr12 20081250 20081510 + 2 NA intron (NR_040098, intron 2 of 2) L1MC5|LINE|L1 46521 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 537-60 chr14 19903258 19903708 + 2 NA Intergenic L1MA8|LINE|L1 -17124 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 400-94 chr14 61937148 61937370 + 2 NA intron (NM_001367663, intron 1 of 7) intron (NM_001367663, intron 1 of 7) 9564 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 259-271 chr3 188695184 188695384 + 2 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) 6503 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 333-452 chr5 68611633 68611886 + 2 NA Intergenic L1MA4A|LINE|L1 319182 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 196-2 chr1 5312490 5312638 + 2 NA Intergenic L2a|LINE|L2 550177 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 132-28 chr14 78874516 78874601 + 2 NA intron (NM_004796, intron 7 of 16) intron (NM_004796, intron 7 of 16) -325424 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 402-183 chr20 1070989 1071223 + 2 NA Intergenic HAL1M8|LINE|L1 -42123 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 379-249 chr4 126430275 126430602 + 2 NA Intergenic L1MB7|LINE|L1 923179 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 257-14 chr1 106821177 106821368 + 2 NA intron (NR_147165, intron 2 of 2) (TTTTTA)n|Simple_repeat|Simple_repeat 3033 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 281-319 chr4 76279347 76279505 + 2 NA intron (NM_001242939, intron 6 of 6) intron (NM_001242939, intron 6 of 6) -26600 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 396-239 chr3 186376306 186376527 + 2 NA Intergenic Intergenic -14182 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 512-226 chr5 120019175 120019565 + 2 NA Intergenic Intergenic 389811 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 364-297 chr4 31586864 31587134 + 2 NA Intergenic Intergenic 80455 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 225-193 chr22 48189958 48190129 + 2 NA Intergenic (TTTTAG)n|Simple_repeat|Simple_repeat -84321 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 369-365 chr6 133117342 133117668 + 2 NA Intergenic L1M5|LINE|L1 29425 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 315-38 chr1 231864835 231865050 + 2 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -46425 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 619-63 chr18 7312455 7312921 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 81584 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 469-130 chr2 62054773 62055093 + 2 NA intron (NM_001321781, intron 2 of 2) Charlie3|DNA|hAT-Charlie -141182 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 178-133 chr7 51910979 51911072 + 2 NA Intergenic Intergenic -517769 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 379-106 chr15 87585985 87586238 + 2 NA Intergenic Intergenic 9182 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 498-182 chr3 191694932 191695406 + 2 NA Intergenic Intergenic 234006 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 233-242 chr3 158125919 158126121 + 2 NA intron (NM_001271834, intron 3 of 8) L1M4|LINE|L1 15931 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 289-149 chr15 54933900 54934140 + 2 NA Intergenic L1M1|LINE|L1 -122727 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 739-42 chr2 220524700 220525276 + 2 NA Intergenic Intergenic -618423 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 366-437 chr8 76219636 76219870 + 2 NA Intergenic L1ME3|LINE|L1 -186901 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 229-144 chr17 34868840 34869000 + 2 NA Intergenic HAL1ME|LINE|L1 92540 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 356-225 chr2 12690488 12690689 + 2 NA Intergenic L1MA6|LINE|L1 -26284 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 348-192 chr17 75234904 75235123 + 2 NA intron (NM_001303276, intron 16 of 17) intron (NM_001303276, intron 16 of 17) 26593 NM_138619 23163 Hs.87726 NM_014001 ENSG00000125447 GGA3 - golgi associated, gamma adaptin ear containing, ARF binding protein 3 protein-coding 218-356 chr9 106583617 106583789 + 2 NA Intergenic Intergenic -17225 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 510-147 chr2 88231460 88231945 + 2 NA Intergenic L1MC5|LINE|L1 58563 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 411-34 chr10 83428320 83428629 + 2 NA Intergenic Intergenic 248615 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 278-163 chr17 77136792 77137048 + 2 NA intron (NM_001204410, intron 2 of 17) AluSp|SINE|Alu -4049 NM_001143999 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 315-27 chr1 173363846 173364112 + 2 NA intron (NR_037845, intron 2 of 2) L1ME3G|LINE|L1 97383 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 463-170 chr21 23089010 23089283 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 9862 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 571-52 chr15 91699791 91700149 + 2 NA Intergenic Intergenic -153738 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 343-280 chr2 170615444 170615752 + 2 NA intron (NM_001083615, intron 31 of 33) MLT1F2|LTR|ERVL-MaLR 98969 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 512-68 chr12 114591389 114591749 + 2 NA Intergenic Intergenic 92606 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 360-129 chr14 79443110 79443302 + 2 NA intron (NM_001105250, intron 1 of 6) MIR3|SINE|MIR 163826 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 163-17 chr10 33652464 33652581 + 2 NA Intergenic L1MB4|LINE|L1 120158 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 335-555 chr8 141820460 141820697 + 2 NA Intergenic MIRc|SINE|MIR -34265 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 350-262 chr2 233908620 233908797 + 2 NA Intergenic L2b|LINE|L2 -8665 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 444-222 chr6 116298337 116298585 + 2 NA intron (NR_136524, intron 1 of 4) MLT1D|LTR|ERVL-MaLR -18344 NM_003309 7259 Hs.458358 NM_003309 ENSG00000189241 TSPYL1 TSPYL TSPY like 1 protein-coding 283-246 chr2 160503279 160503528 + 2 NA Intergenic Intergenic -9596 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 334-30 chr1 173025726 173026012 + 2 NA Intergenic L1PA15|LINE|L1 25094 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 312-17 chr1 113568099 113568301 + 2 NA intron (NM_001142782, intron 2 of 20) L1ME3B|LINE|L1 177685 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 314-342 chr20 42420935 42421112 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -264460 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 294-413 chr6 120321678 120321922 + 2 NA Intergenic L1M4|LINE|L1 306621 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 813-42 chr7 88020345 88020958 + 2 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 86400 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 233-380 chr8 120908614 120908776 + 2 NA Intergenic Intergenic -96649 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 326-206 chr18 8047163 8047392 + 2 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 319757 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 906-8 chr10 62542292 62543190 + 2 NA intron (NM_199452, intron 1 of 6) L1MA9|LINE|L1 22293 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 240-273 chr22 26253882 26254015 + 2 NA intron (NM_001184776, intron 1 of 14) L1ME4c|LINE|L1 84474 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 397-269 chr5 159493416 159493772 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -27318 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 202-3 chr1 48628263 48628395 + 2 NA intron (NM_001323575, intron 9 of 12) intron (NM_001323575, intron 9 of 12) 148562 NM_024603 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 354-210 chr2 59742087 59742276 + 2 NA Intergenic L2c|LINE|L2 524473 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 870-7 chr15 57103996 57104580 + 2 NA intron (NM_207038, intron 5 of 19) intron (NM_207038, intron 5 of 19) -115142 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 219-5 chr1 42238844 42239007 + 2 NA intron (NM_001198850, intron 4 of 12) L1ME1|LINE|L1 -74180 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 230-233 chr3 88685011 88685154 + 2 NA Intergenic Intergenic 346626 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 243-321 chr4 59931340 59931531 + 2 NA Intergenic L1MA2|LINE|L1 917862 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 349-40 chr1 239548290 239548530 + 2 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -80663 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 513-35 chr10 107735303 107735781 + 2 NA Intergenic L1MA9|LINE|L1 333751 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 332-199 chr17 53909204 53909413 + 2 NA Intergenic Intergenic 86381 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 262-5 chr1 34046163 34046400 + 2 NA intron (NM_052896, intron 2 of 69) MER119|DNA|hAT-Charlie 118993 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 454-330 chr9 24037373 24037726 + 2 NA Intergenic L1ME4a|LINE|L1 -186948 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 338-431 chr5 44567777 44568088 + 2 NA Intergenic Intergenic -57650 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 351-521 chr9 115823685 115824014 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -79610 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 190-94 chr2 114780430 114780553 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 53057 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 316-359 chr3 104472733 104472901 + 2 NA Intergenic L1M4|LINE|L1 -893896 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 401-65 chr12 42662004 42662277 + 2 NA intron (NR_135027, intron 3 of 4) intron (NR_135027, intron 3 of 4) 15557 NR_135027 105369738 Hs.569161 NR_135026 ENSG00000257164 LINC02451 - long intergenic non-protein coding RNA 2451 ncRNA 336-296 chr2 170090931 170091159 + 2 NA Intergenic L1MEg|LINE|L1 -87102 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 331-461 chr6 71067194 71067505 + 2 NA Intergenic Intergenic -110289 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 316-440 chr5 54349837 54350028 + 2 NA intron (NR_126379, intron 1 of 4) MER57-int|LTR|ERV1 28988 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 424-128 chr2 46214255 46214540 + 2 NA Intergenic L1M1|LINE|L1 -83010 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 330-51 chr10 20402007 20402274 + 2 NA Intergenic Intergenic -149830 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 127-63 chr4 147390929 147391012 + 2 NA Intergenic Intergenic -46253 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 497-61 chr12 101430813 101431130 + 2 NA Intergenic Intergenic -23151 NM_001301068 400 Hs.372616 NM_001177 ENSG00000120805 ARL1 ARFL1 ADP ribosylation factor like GTPase 1 protein-coding 340-293 chr2 184927581 184927867 + 2 NA intron (NM_194250, intron 2 of 3) L1MA3|LINE|L1 239348 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 255-383 chr7 42626908 42627074 + 2 NA Intergenic Intergenic 79456 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 330-187 chr16 35257829 35258039 + 2 NA Intergenic L1MA9|LINE|L1 62175 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 381-229 chr20 54010124 54010383 + 2 NA intron (NM_001366297, intron 4 of 8) L1MD1|LINE|L1 48767 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 218-67 chr12 41654238 41654443 + 2 NA Intergenic Intergenic -109849 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 321-498 chr6 74363838 74364022 + 2 NA intron (NR_110856, intron 2 of 3) MER119|DNA|hAT-Charlie 294479 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 281-96 chr12 103719443 103719666 + 2 NA intron (NM_017564, intron 44 of 68) MLT1C|LTR|ERVL-MaLR 121680 NM_001031701 51559 Hs.48428 NM_016575 ENSG00000111696 NT5DC3 TU12B1-TY|TU12B1TY 5'-nucleotidase domain containing 3 protein-coding 933-36 chr6 41418541 41419233 + 2 NA Intergenic Intergenic 83279 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 154-12 chr10 21822687 21822789 + 2 NA intron (NM_022365, intron 8 of 11) intron (NM_022365, intron 8 of 11) 180992 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 327-2 chr1 41174470 41174741 + 2 NA intron (NM_001172218, intron 2 of 15) ERVL-int|LTR|ERVL -11588 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 509-37 chr11 21188692 21189054 + 2 NA intron (NM_201551, intron 13 of 18) intron (NM_201551, intron 13 of 18) 519287 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 542-243 chr9 118140679 118141041 + 2 NA Intergenic Intergenic 436457 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 292-381 chr6 66672069 66672325 + 2 NA Intergenic Intergenic 884318 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 507-101 chr17 34448924 34449314 + 2 NA Intergenic Intergenic -85886 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 640-114 chr6 55959689 55960104 + 2 NA Intergenic AluJb|SINE|Alu -84306 NM_021073 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 317-60 chr10 82897945 82898184 + 2 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -665144 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 320-421 chr5 17069795 17070024 + 2 NA Intergenic Intergenic 86083 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 230-397 chr9 31253419 31253576 + 2 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 127993 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 278-292 chr3 161917468 161917687 + 2 NA Intergenic Intergenic 420769 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 276-169 chr15 81413414 81413604 + 2 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -39296 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 493-321 chrX 76121273 76121601 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -51492 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 308-332 chr4 54679005 54679266 + 2 NA intron (NM_000222, intron 1 of 20) intron (NM_000222, intron 1 of 20) 21207 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 430-58 chr12 4223731 4224074 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -49860 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 351-208 chr2 20810180 20810422 + 2 NA intron (NM_021925, intron 1 of 6) MLT1G3|LTR|ERVL-MaLR 12800 NM_001282720 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 354-139 chr14 62756038 62756240 + 2 NA intron (NM_172375, intron 9 of 9) L1MA2|LINE|L1 289319 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 229-352 chr7 26069125 26069339 + 2 NA Intergenic Intergenic -82966 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 456-61 chr12 54831282 54831595 + 2 NA Intergenic MER31-int|LTR|ERV1 -23078 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 370-491 chrX 97893978 97894334 + 2 NA Intergenic L1MA1|LINE|L1 -329621 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 430-293 chr7 77856754 77856999 + 2 NA intron (NM_001366089, intron 2 of 18) MER2|DNA|TcMar-Tigger 16746 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 260-203 chr2 31444978 31445189 + 2 NA Intergenic L1MA1|LINE|L1 -30341 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 330-347 chr3 73676268 73676440 + 2 NA Intergenic Intergenic -51413 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 197-90 chr2 34138484 34138628 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 71330 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 139-88 chr8 87633566 87633647 + 2 NA Intergenic Intergenic 240409 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 418-186 chr4 85206289 85206550 + 2 NA Intergenic L1PBa|LINE|L1 238935 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 547-191 chr5 124461511 124461854 + 2 NA Intergenic Intergenic -23162 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 279-379 chr6 164084757 164084943 + 2 NA Intergenic Intergenic -413366 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 383-157 chr17 58694118 58694437 + 2 NA intron (NM_002876, intron 1 of 1) intron (NM_002876, intron 1 of 1) 1675 NR_103872 5889 Hs.412587 NM_002876 ENSG00000108384 RAD51C BROVCA3|FANCO|R51H3|RAD51L2 RAD51 paralog C protein-coding 342-361 chr4 65915014 65915351 + 2 NA Intergenic L1MEc|LINE|L1 -244687 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 198-173 chr3 146905358 146905472 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -16508 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 497-99 chr18 8141370 8141702 + 2 NA intron (NM_002845, intron 13 of 30) intron (NM_002845, intron 13 of 30) 225498 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 352-23 chr1 192400085 192400323 + 2 NA Intergenic Intergenic 83212 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 367-415 chr7 36009603 36009902 + 2 NA Intergenic L1M5|LINE|L1 -85558 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 314-183 chr15 39369692 39369980 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 119167 NR_144507 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 226-110 chr16 7879470 7879621 + 2 NA Intergenic Intergenic 546700 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 465-114 chr18 14651116 14651452 + 2 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat -96888 NM_001367607 374860 Hs.567889 NM_001145029 ENSG00000180777 ANKRD30B NY-BR-1.1 ankyrin repeat domain 30B protein-coding 214-331 chr8 109990932 109991140 + 2 NA Intergenic Intergenic -15265 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 195-136 chr22 35208695 35208805 + 2 NA intron (NR_126356, intron 1 of 5) MLT1A0-int|LTR|ERVL-MaLR 22306 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 287-94 chr11 84556510 84556780 + 2 NA intron (NM_001351274, intron 5 of 26) MER30|DNA|hAT-Charlie 164297 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 456-20 chr1 218807219 218807614 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 111095 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 339-117 chr12 3551326 3551641 + 2 NA intron (NM_019854, intron 3 of 9) intron (NM_019854, intron 3 of 9) -58664 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 251-71 chr12 86128623 86128825 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) 127667 NR_147093 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 286-108 chr14 28158697 28158920 + 2 NA Intergenic MER52A|LTR|ERV1 -485587 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 247-279 chr3 175822041 175822231 + 2 NA Intergenic HAL1ME|LINE|L1 -45803 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 328-526 chr7 32529473 32529725 + 2 NA intron (NM_015060, intron 1 of 15) MIRb|SINE|MIR 34110 NM_015060 23080 Hs.128056 NM_015060 ENSG00000105778 AVL9 KIAA0241 AVL9 cell migration associated protein-coding 226-24 chr1 218738445 218738613 + 2 NA intron (NR_031644, intron 4 of 6) intron (NR_031644, intron 4 of 6) 179982 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 346-24 chr1 162858520 162858727 + 2 NA intron (NM_178550, intron 2 of 3) intron (NM_178550, intron 2 of 3) 10192 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 488-280 chr8 135439717 135440135 + 2 NA Intergenic Intergenic -17530 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 206-44 chr11 28461203 28461355 + 2 NA Intergenic Intergenic 16269 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 282-32 chr10 8662116 8662283 + 2 NA Intergenic Intergenic -67808 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 372-25 chr1 167323736 167324035 + 2 NA intron (NR_037163, intron 2 of 16) AluSx|SINE|Alu -5185 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 214-239 chr4 73395782 73395984 + 2 NA Intergenic L2b|LINE|L2 -8404 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 232-240 chr3 71840564 71840761 + 2 NA Intergenic MER31A|LTR|ERV1 -55514 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 360-264 chr20 42753391 42753617 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 68021 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 340-36 chr1 238590505 238590793 + 2 NA Intergenic Intergenic -104632 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 348-454 chr6 63466828 63467143 + 2 NA Intergenic L2a|LINE|L2 -105027 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 331-359 chr3 95267655 95267836 + 2 NA Intergenic Intergenic 329482 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 137-51 chr2 199707753 199707830 + 2 NA Intergenic L1MEc|LINE|L1 99723 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 806-10 chr12 44477403 44478052 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 397934 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 394-208 chr3 12208446 12208744 + 2 NA Intergenic L1M5|LINE|L1 -49683 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 218-340 chr8 138028197 138028385 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 55254 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 145-52 chr20 47082203 47082342 + 2 NA intron (NM_172110, intron 7 of 13) intron (NM_172110, intron 7 of 13) -84695 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 437-6 chr1 68355899 68356229 + 2 NA Intergenic L2a|LINE|L2 93890 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 256-107 chr13 79701674 79701881 + 2 NA Intergenic L1ME3E|LINE|L1 -102609 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 351-192 chr19 7760172 7760407 + 2 NA Intergenic AluSq2|SINE|Alu -2954 NM_001144906 10332 Hs.421437 NM_014257 ENSG00000104938 CLEC4M CD209L|CD299|DC-SIGN2|DC-SIGNR|DCSIGNR|HP10347|L-SIGN|LSIGN C-type lectin domain family 4 member M protein-coding 307-526 chr9 122755224 122755445 + 2 NA Intergenic Intergenic 5486 NM_001004453 392390 Hs.553790 NM_001004453 ENSG00000171459 OR1L6 HG16|OR1K1|OR1L7|OR9-30 olfactory receptor family 1 subfamily L member 6 protein-coding 391-301 chr6 41196509 41196791 + 2 NA intron (NM_024807, intron 2 of 4) L1MB8|LINE|L1 4499 NM_024807 79865 Hs.164797 NM_024807 ENSG00000112195 TREML2 C6orf76|TLT-2|TLT2|dJ238O23.1 triggering receptor expressed on myeloid cells like 2 protein-coding 269-360 chr6 129576989 129577253 + 2 NA 3' UTR (NM_033515, exon 15 of 15) 3' UTR (NM_033515, exon 15 of 15) 133056 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 290-125 chr14 25053662 25053882 + 2 NA Intergenic Intergenic -3475 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 393-143 chr18 33620010 33620304 + 2 NA intron (NM_030632, intron 2 of 11) intron (NM_030632, intron 2 of 11) 41938 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 319-416 chr5 81441158 81441433 + 2 NA intron (NM_012446, intron 13 of 16) intron (NM_012446, intron 13 of 16) -47161 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 201-24 chr10 20728647 20728767 + 2 NA Intergenic L1MEc|LINE|L1 168895 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 303-151 chr15 97810760 97810916 + 2 NA intron (NR_024172, intron 1 of 2) MLT1H2|LTR|ERVL-MaLR 63591 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 312-398 chr5 3258595 3258848 + 2 NA Intergenic L1MA3|LINE|L1 80886 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 380-420 chr9 72465571 72465786 + 2 NA Intergenic Intergenic -56123 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 334-535 chr8 83427494 83427721 + 2 NA Intergenic Intergenic 23849 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 302-247 chr20 43778223 43778458 + 2 NA Intergenic Intergenic -51338 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 307-453 chr7 57474018 57474224 + 2 NA TTS (NM_001159279) TTS (NM_001159279) 23944 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 232-309 chr5 86453258 86453455 + 2 NA Intergenic Intergenic -164585 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 351-296 chr3 44700273 44700512 + 2 NA Intergenic MER67C|LTR|ERV1 -12251 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 211-77 chr13 89062760 89062905 + 2 NA Intergenic L1PA15-16|LINE|L1 -172459 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 315-342 chr4 71584720 71585028 + 2 NA Intergenic Intergenic 199205 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 233-255 chr4 40501645 40501872 + 2 NA TTS (NR_039966) TTS (NR_039966) 361 NR_039966 100616274 NR_039966 ENSG00000263642 MIR4802 - microRNA 4802 ncRNA 151-33 chr19 12536815 12536895 + 2 NA intron (NM_144976, intron 1 of 3) intron (NM_144976, intron 1 of 3) 14627 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 241-102 chr14 43139783 43139962 + 2 NA Intergenic L2a|LINE|L2 1367411 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 262-74 chr11 37757184 37757321 + 2 NA Intergenic MIR|SINE|MIR -181349 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 423-207 chr4 151205334 151205701 + 2 NA intron (NM_001009555, intron 2 of 20) MIR3|SINE|MIR 20903 NM_001128923 152503 Hs.744983 NM_001009555 ENSG00000109686 SH3D19 EBP|EVE1|Eve-1|Kryn|SH3P19 SH3 domain containing 19 protein-coding 214-95 chr14 43882812 43883001 + 2 NA Intergenic Intergenic 624377 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 253-219 chr20 16777644 16777821 + 2 NA Intergenic Intergenic 29379 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 343-216 chr19 48879442 48879645 + 2 NA Intergenic AluSp|SINE|Alu 7151 NM_014330 23645 Hs.631593 NM_014330 ENSG00000087074 PPP1R15A GADD34 protein phosphatase 1 regulatory subunit 15A protein-coding 262-280 chr3 83265986 83266171 + 2 NA Intergenic L1M4|LINE|L1 1279936 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 140-41 chr2 174169717 174169812 + 2 NA intron (NM_001011708, intron 3 of 9) L1ME1|LINE|L1 78768 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 574-115 chr3 185437301 185437683 + 2 NA exon (NM_001242314, exon 4 of 15) exon (NM_001242314, exon 4 of 15) 61543 NM_080652 90407 Hs.677570 NM_080652 ENSG00000163900 TMEM41A 2900010K02Rik transmembrane protein 41A protein-coding 130-21 chr14 23770548 23770629 + 2 NA Intergenic Intergenic 134224 NM_182908 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 434-329 chrX 155590245 155590646 + 2 NA intron (NM_018196, intron 1 of 7) L1MA8|LINE|L1 -22120 NM_001304990 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 411-118 chr17 66091382 66091621 + 2 NA intron (NM_001302891, intron 6 of 24) L1MA8|LINE|L1 100391 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 309-286 chr2 210993972 210994251 + 2 NA Intergenic L1MEc|LINE|L1 376540 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 249-149 chr17 11236639 11236818 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -4485 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 367-18 chr1 90672021 90672266 + 2 NA Intergenic Intergenic 14393 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 335-83 chr11 15487852 15488021 + 2 NA Intergenic L2a|LINE|L2 -155949 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 235-410 chrX 93172465 93172666 + 2 NA Intergenic L1MA1|LINE|L1 -347662 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 314-556 chr8 51605747 51606023 + 2 NA intron (NM_144651, intron 2 of 22) MSTD|LTR|ERVL-MaLR 203560 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 158-51 chr2 40716641 40716731 + 2 NA Intergenic Intergenic -204251 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 354-363 chr5 20336021 20336221 + 2 NA intron (NM_001349556, intron 1 of 13) HUERS-P3-int|LTR|ERV1 30570 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 351-388 chr5 92975068 92975250 + 2 NA Intergenic Intergenic 596184 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 156-36 chr15 82712304 82712424 + 2 NA intron (NR_034139, intron 1 of 3) intron (NR_034139, intron 1 of 3) 1629 NR_034139 338963 Hs.254464 NR_034139 ENSG00000228141 LOC338963 - epididymal protein pseudogene pseudo 573-30 chr10 122915950 122916391 + 2 NA Intergenic L2a|LINE|L2 5560 NM_001029888 118670 Hs.369829 NM_001029888 ENSG00000203795 FAM24A - family with sequence similarity 24 member A protein-coding 562-120 chr2 178233522 178234010 + 2 NA intron (NM_001201480, intron 1 of 25) MIR|SINE|MIR 39254 NM_001201481 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 226-175 chr2 115857091 115857245 + 2 NA Intergenic L1MA4|LINE|L1 513353 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 393-182 chr2 190941345 190941572 + 2 NA intron (NM_014905, intron 14 of 17) L1ME3Cz|LINE|L1 60637 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 290-218 chr2 123750083 123750250 + 2 NA Intergenic Intergenic 275008 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 511-252 chr8 10298873 10299229 + 2 NA intron (NM_001199729, intron 4 of 6) L1ME4c|LINE|L1 -175514 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 591-85 chr20 16014078 16014479 + 2 NA intron (NM_001351663, intron 15 of 17) MIRb|SINE|MIR -28396 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 242-391 chr8 71142299 71142452 + 2 NA Intergenic Intergenic 214331 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 298-142 chr15 57482468 57482655 + 2 NA intron (NM_032866, intron 8 of 18) L1MD1|LINE|L1 106056 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 262-284 chr3 104141736 104141907 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -617705 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 241-417 chr9 5126445 5126645 + 2 NA intron (NM_004972, intron 24 of 24) intron (NM_004972, intron 24 of 24) 59094 NM_007179 11172 Hs.632648 NM_007179 ENSG00000120210 INSL6 RIF1 insulin like 6 protein-coding 769-50 chr5 31295376 31295941 + 2 NA intron (NM_001362435, intron 3 of 10) MIRb|SINE|MIR 101972 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 337-114 chr12 33549675 33549960 + 2 NA Intergenic L1ME1|LINE|L1 -109998 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 323-311 chr22 33562032 33562231 + 2 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -125462 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 277-236 chr21 24012566 24012815 + 2 NA Intergenic L1M|LINE|L1 308687 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 229-15 chr1 115123829 115124011 + 2 NA Intergenic L1M4|LINE|L1 -34417 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 353-435 chr6 36107929 36108134 + 2 NA intron (NM_139012, intron 11 of 11) MIR1_Amn|SINE|MIR -22482 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 289-449 chr7 122661987 122662261 + 2 NA intron (NM_001167940, intron 3 of 29) intron (NM_001167940, intron 3 of 29) 36993 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 346-217 chr19 30583363 30583667 + 2 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 211131 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 234-61 chr11 79773648 79773815 + 2 NA Intergenic Intergenic -332701 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 469-20 chr1 188381711 188382073 + 2 NA Intergenic L1M5|LINE|L1 938264 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 355-33 chr10 12954012 12954363 + 2 NA intron (NM_001282658, intron 6 of 6) intron (NM_001282658, intron 6 of 6) 47526 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 303-332 chr4 144320819 144321003 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -180193 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 369-246 chr20 61704209 61704534 + 2 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 15377 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 351-63 chr11 22117279 22117553 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -75669 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 452-253 chr7 72109800 72110171 + 2 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 227406 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 238-182 chr2 125717863 125718004 + 2 NA Intergenic MIRb|SINE|MIR 400052 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 313-427 chr5 44797844 44798132 + 2 NA intron (NR_109863, intron 1 of 3) MER41B|LTR|ERV1 10805 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 353-520 chr8 63308894 63309090 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 139989 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 297-175 chr17 69007635 69007911 + 2 NA exon (NM_080283, exon 25 of 39) exon (NM_080283, exon 25 of 39) 3059 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 354-443 chr7 111233527 111233718 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 142495 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 261-276 chr4 45698248 45698404 + 2 NA Intergenic Intergenic 425728 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 239-408 chr8 87729844 87730028 + 2 NA Intergenic Intergenic 144079 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 606-20 chr10 75446652 75447199 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) 15301 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 235-26 chr1 240248270 240248434 + 2 NA intron (NM_020066, intron 6 of 17) L1MA4A|LINE|L1 156469 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 246-103 chr13 37267061 37267212 + 2 NA Intergenic L2|LINE|L2 -161472 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 353-19 chr1 103340811 103341136 + 2 NA Intergenic LTR16A1|LTR|ERVL 184538 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 325-369 chr3 178312724 178313022 + 2 NA Intergenic Intergenic -106328 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 385-254 chr3 153133081 153133408 + 2 NA Intergenic AluSp|SINE|Alu -28982 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 112-14 chr13 111889931 111890020 + 2 NA Intergenic L1M4a2|LINE|L1 -3403 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 430-172 chr20 45606006 45606308 + 2 NA Intergenic L1MA9|LINE|L1 -23582 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 742-22 chr12 127522113 127522692 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 114065 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 222-284 chr5 17791570 17791758 + 2 NA Intergenic L1MC3|LINE|L1 -15610 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 336-120 chr12 13383879 13384115 + 2 NA Intergenic Intergenic -7252 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 261-121 chr15 49232448 49232635 + 2 NA intron (NM_001352047, intron 4 of 11) MSTA-int|LTR|ERVL-MaLR 62294 NM_001289030 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 348-381 chr4 156173376 156173617 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -219630 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 446-120 chr17 57800499 57800834 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 49378 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 238-373 chr8 50120349 50120538 + 2 NA intron (NR_135798, intron 1 of 15) (TAC)n|Simple_repeat|Simple_repeat -43688 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 331-276 chr2 106728917 106729125 + 2 NA Intergenic MER70C|LTR|ERVL 157007 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 296-125 chr13 105710387 105710622 + 2 NA intron (NR_046391, intron 3 of 3) L1ME1|LINE|L1 3674 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 264-182 chr19 12213122 12213306 + 2 NA Intergenic L1M3|LINE|L1 18199 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 325-233 chr18 772214 772391 + 2 NA intron (NM_005433, intron 1 of 11) AluSp|SINE|Alu 39940 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 455-278 chr8 87541629 87541923 + 2 NA Intergenic Intergenic 332239 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 459-260 chr6 69627100 69627436 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 169198 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 399-280 chr7 47017507 47017826 + 2 NA Intergenic L1M5|LINE|L1 -320544 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 749-103 chrX 83817301 83817920 + 2 NA Intergenic L1PA11|LINE|L1 -43516 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 229-309 chr5 89199216 89199386 + 2 NA intron (NR_136219, intron 6 of 9) L1MA8|LINE|L1 -295196 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 280-119 chr14 52869521 52869745 + 2 NA intron (NM_006832, intron 10 of 14) Tigger3b|DNA|TcMar-Tigger -78026 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 589-117 chr5 33365152 33365533 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -75354 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 296-69 chr10 129122787 129122996 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 210058 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 236-97 chr12 128181983 128182215 + 2 NA Intergenic LTR102_Mam|LTR|ERVL 63882 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 315-37 chr1 230944586 230944773 + 2 NA intron (NM_024525, intron 5 of 22) intron (NM_024525, intron 5 of 22) 34182 NM_024525 79573 Hs.424788 NM_024525 ENSG00000143643 TTC13 - tetratricopeptide repeat domain 13 protein-coding 344-212 chr19 40024683 40024861 + 2 NA Intergenic Intergenic 27712 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 225-302 chr5 180485027 180485195 + 2 NA Intergenic Intergenic -9268 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 386-251 chr3 192369596 192369964 + 2 NA intron (NM_004113, intron 2 of 5) L2c|LINE|L2 39269 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 517-35 chr10 102563476 102563835 + 2 NA intron (NM_001178133, intron 3 of 10) AluJb|SINE|Alu 59683 NM_001178133 51684 Hs.404089 NM_016169 ENSG00000107882 SUFU JBTS32|PRO1280|SUFUH|SUFUXL SUFU negative regulator of hedgehog signaling protein-coding 272-294 chr4 33376428 33376652 + 2 NA Intergenic Intergenic 663353 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 314-200 chr16 5594506 5594692 + 2 NA Intergenic MER4A1|LTR|ERV1 21651 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 381-162 chr19 29017930 29018225 + 2 NA Intergenic AluSx|SINE|Alu 15522 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 342-2 chr1 18231583 18231834 + 2 NA intron (NM_032880, intron 2 of 9) MER3|DNA|hAT-Charlie 123910 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 401-103 chr15 69939452 69939751 + 2 NA Intergenic Intergenic 104367 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 279-45 chr10 62368533 62368684 + 2 NA intron (NR_104162, intron 1 of 3) intron (NR_104162, intron 1 of 3) -5549 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 392-43 chr11 86892280 86892523 + 2 NA intron (NR_120592, intron 2 of 2) intron (NR_120592, intron 2 of 2) -34447 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 249-9 chr1 64227040 64227262 + 2 NA intron (NR_158769, intron 6 of 8) L1M5|LINE|L1 23528 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 471-216 chr5 135569762 135570122 + 2 NA TTS (NM_004887) TTS (NM_004887) -9223 NM_001349335 153328 Hs.412418 NM_145282 ENSG00000145832 SLC25A48 - solute carrier family 25 member 48 protein-coding 196-107 chr19 38687660 38687819 + 2 NA intron (NM_001322033, intron 1 of 20).2 L1MB7|LINE|L1 40090 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 191-138 chr3 94561694 94561834 + 2 NA Intergenic Intergenic -376499 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 270-73 chr12 16565780 16565985 + 2 NA intron (NR_045014, intron 2 of 3) L1MA6|LINE|L1 39497 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 456-283 chr6 129685243 129685522 + 2 NA intron (NM_033515, intron 1 of 14) AluSx1|SINE|Alu 24795 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 189-204 chr8 58933389 58933573 + 2 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) 185666 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 190-196 chr9 84608496 84608648 + 2 NA Intergenic Intergenic -59886 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 306-415 chr5 168451466 168451680 + 2 NA intron (NM_001161661, intron 17 of 22) AluJr4|SINE|Alu -34898 NM_002887 5917 Hs.654907 NM_002887 ENSG00000113643 RARS ArgRS|DALRD1|HLD9 arginyl-tRNA synthetase protein-coding 357-341 chr5 44129091 44129406 + 2 NA Intergenic Intergenic -259484 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 556-168 chr4 187091839 187092131 + 2 NA Intergenic Intergenic -110001 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 570-188 chr7 126155876 126156439 + 2 NA Intergenic Intergenic -891866 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 363-88 chr11 98206760 98207012 + 2 NA Intergenic L1MA9|LINE|L1 -814063 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 340-13 chr1 76805159 76805415 + 2 NA Intergenic Intergenic -26020 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 267-356 chr5 155202563 155202769 + 2 NA Intergenic L1PBa1|LINE|L1 188911 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 405-46 chr11 54965302 54965562 + 2 NA Intergenic ALR/Alpha|Satellite|centr 258600 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 424-38 chr11 29377838 29378132 + 2 NA Intergenic Intergenic -216428 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 431-74 chr14 32795589 32795967 + 2 NA intron (NM_004274, intron 12 of 13) L1PA11|LINE|L1 -143101 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 236-30 chr1 223837191 223837383 + 2 NA intron (NM_005426, intron 1 of 18) intron (NM_005426, intron 1 of 18) 8660 NM_001031685 7159 Hs.523968 NM_005426 ENSG00000143514 TP53BP2 53BP2|ASPP2|BBP|P53BP2|PPP1R13A tumor protein p53 binding protein 2 protein-coding 411-239 chr5 127611970 127612323 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -36875 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 647-10 chr10 16249085 16249718 + 2 NA Intergenic L1PA16|LINE|L1 -187542 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 447-116 chr2 18041292 18041541 + 2 NA Intergenic MIRc|SINE|MIR 162749 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 332-487 chr7 61052414 61052596 + 2 NA Intergenic Intergenic 2251551 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 186-129 chr5 42019179 42019355 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 93986 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 503-120 chr16 79078291 79078716 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 522234 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 317-42 chr10 15550021 15550298 + 2 NA intron (NM_001291494, intron 25 of 28) THE1B|LTR|ERVL-MaLR 169763 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 412-285 chr6 120919740 120920062 + 2 NA Intergenic L1ME1|LINE|L1 414579 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 385-23 chr10 26000377 26000722 + 2 NA intron (NM_001368265, intron 6 of 7) LTR81B|LTR|Gypsy 66320 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 288-78 chr11 121126053 121126282 + 2 NA intron (NM_005422, intron 7 of 22) intron (NM_005422, intron 7 of 22) 23501 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 301-331 chr4 108874231 108874473 + 2 NA intron (NM_198721, intron 18 of 36) intron (NM_198721, intron 18 of 36) -111299 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 366-388 chr6 148066872 148067211 + 2 NA Intergenic Intergenic -205287 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 469-102 chr16 35641493 35641876 + 2 NA Intergenic Intergenic -104868 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 376-181 chr2 60137263 60137592 + 2 NA Intergenic Intergenic 245609 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 256-158 chr17 28023405 28023579 + 2 NA Intergenic L2a|LINE|L2 -19185 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 200-35 chr10 93666336 93666440 + 2 NA TTS (NM_006204) TTS (NM_006204) 36184 NM_001347712 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 265-228 chr22 39676063 39676290 + 2 NA intron (NM_001003406, intron 28 of 35) intron (NM_001003406, intron 28 of 35) 105423 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 445-128 chr2 114367736 114368089 + 2 NA Intergenic Intergenic -74729 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 652-23 chr11 22230506 22230873 + 2 NA intron (NM_001142649, intron 7 of 21) intron (NM_001142649, intron 7 of 21) 37513 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 562-97 chr2 18023936 18024331 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 145466 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 292-4 chr1 28970524 28970714 + 2 NA intron (NM_001166006, intron 1 of 14) intron (NM_001166006, intron 1 of 14) 56043 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 317-300 chr3 46770603 46770844 + 2 NA Intergenic L1MA9|LINE|L1 -13868 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 855-7 chr10 94898282 94898825 + 2 NA Intergenic L1P1|LINE|L1 -40105 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 251-340 chr6 74001159 74001406 + 2 NA Intergenic Intergenic -68169 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 373-345 chr5 164436164 164436398 + 2 NA Intergenic Intergenic 31121 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 492-236 chr6 163631584 163631999 + 2 NA Intergenic AluSc8|SINE|Alu 39693 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 204-173 chr21 24421771 24421926 + 2 NA Intergenic Intergenic -6892 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 625-13 chr10 82827759 82828221 + 2 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -595070 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 327-302 chr20 55178662 55178977 + 2 NA Intergenic MER20|DNA|hAT-Charlie -244224 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 764-48 chr3 48832277 48832880 + 2 NA intron (NM_001321982, intron 1 of 11) intron (NM_001321982, intron 1 of 11) 15296 NM_001321989 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 227-25 chr1 236321242 236321400 + 2 NA Intergenic L1M4c|LINE|L1 -39363 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 216-266 chr4 163378342 163378501 + 2 NA Intergenic Intergenic 34319 NM_001317091 4889 Hs.519058 NM_006174 ENSG00000164129 NPY5R NPY5-R|NPYR5|NPYY5-R neuropeptide Y receptor Y5 protein-coding 377-7 chr1 60227915 60228139 + 2 NA Intergenic Intergenic -154257 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 535-165 chr3 59630737 59631162 + 2 NA Intergenic Eulor11|DNA|DNA 27548 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 444-28 chr10 93138350 93138610 + 2 NA Intergenic Intergenic 64587 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 487-162 chr20 12726225 12726530 + 2 NA Intergenic Intergenic 210586 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 449-97 chr17 34527516 34527868 + 2 NA Intergenic Intergenic 51677 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 447-106 chr18 67777817 67778157 + 2 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 36835 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 255-463 chr9 90278297 90278483 + 2 NA Intergenic L1MCa|LINE|L1 155099 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 371-311 chr5 57960408 57960599 + 2 NA Intergenic Intergenic -61341 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 341-448 chr5 142854157 142854413 + 2 NA intron (NM_001349547, intron 1 of 21) intron (NM_001349547, intron 1 of 21) 14625 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 278-330 chr5 26354251 26354494 + 2 NA Intergenic L1MA4A|LINE|L1 684214 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 307-240 chr2 95136619 95136836 + 2 NA Intergenic MER89-int|LTR|ERV1 -14700 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 272-373 chr6 19100423 19100623 + 2 NA intron (NR_110860, intron 6 of 10) intron (NR_110860, intron 6 of 10) 79957 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 311-503 chr8 81605171 81605422 + 2 NA non-coding (NR_146081, exon 8 of 8) non-coding (NR_146081, exon 8 of 8) 25981 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 280-371 chr7 9793368 9793602 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 159215 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 280-138 chr15 56299698 56299945 + 2 NA Intergenic L1MA3|LINE|L1 -54739 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 218-354 chr9 102423252 102423416 + 2 NA Intergenic Intergenic -96303 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 316-242 chr2 334564 334772 + 2 NA intron (NR_146953, intron 3 of 3) L1ME2|LINE|L1 18384 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 324-131 chr12 132973112 132973373 + 2 NA Intergenic Intergenic -13125 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 434-60 chr12 17725639 17726022 + 2 NA Intergenic Intergenic 52531 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 244-70 chr12 48588304 48588489 + 2 NA Intergenic L1PA13|LINE|L1 -18350 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 271-255 chr22 47769410 47769624 + 2 NA intron (NR_122046, intron 8 of 8) L1MA2|LINE|L1 137843 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 451-116 chr2 110955701 110956057 + 2 NA intron (NM_001142807, intron 12 of 17) intron (NM_001142807, intron 12 of 17) 159709 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 190-127 chr3 157895186 157895296 + 2 NA Intergenic LTR33B|LTR|ERVL 210922 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 672-75 chr3 178638643 178639180 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 80061 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 245-42 chr10 48674734 48674922 + 2 NA Intergenic L1ME2|LINE|L1 -10045 NM_001370154 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 218-160 chr2 103275664 103275823 + 2 NA Intergenic L1MC5|LINE|L1 -291314 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 370-52 chr10 70959163 70959451 + 2 NA Intergenic Intergenic 20254 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 177-80 chr2 162161474 162161619 + 2 NA intron (NR_110255, intron 1 of 3) intron (NR_110255, intron 1 of 3) -9299 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 214-187 chr20 41962641 41962793 + 2 NA Intergenic Intergenic -344340 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 277-410 chr8 81221391 81221551 + 2 NA Intergenic L1PB1|LINE|L1 -59065 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 410-234 chr5 28030322 28030697 + 2 NA Intergenic L1M1|LINE|L1 257156 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 191-224 chr9 72121026 72121186 + 2 NA intron (NM_001242507, intron 1 of 13) MIRb|SINE|MIR 6511 NM_001242507 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 333-461 chr5 96123366 96123676 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 44383 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 314-534 chr7 53002720 53002892 + 2 NA Intergenic Intergenic -32827 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 306-534 chr8 138958489 138958735 + 2 NA Intergenic L2b|LINE|L2 -44571 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 283-316 chr4 43561315 43561496 + 2 NA Intergenic AluSp|SINE|Alu -68862 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 407-122 chr18 71741292 71741538 + 2 NA intron (NR_126324, intron 1 of 4) L1PA15-16|LINE|L1 40811 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 477-305 chr9 106323017 106323315 + 2 NA Intergenic LTR88b|LTR|Gypsy? -277762 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 246-78 chr11 120046832 120047024 + 2 NA Intergenic L1MD1|LINE|L1 81925 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 308-501 chr8 101806402 101806564 + 2 NA intron (NM_001040628, intron 4 of 7) L1M4b|LINE|L1 -15514 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 459-97 chr16 5826732 5827042 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -192137 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 813-25 chr3 46757422 46757929 + 2 NA promoter-TSS (NR_160552) promoter-TSS (NR_160552) -820 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 256-169 chr17 75783618 75783855 + 2 NA TTS (NR_039892) TTS (NR_039892) 871 NR_039892 100616282 NR_039892 ENSG00000283853 MIR4738 - microRNA 4738 ncRNA 620-4 chr1 94443348 94443822 + 2 NA intron (NM_002858, intron 1 of 22) L1PB4|LINE|L1 25196 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 252-255 chr3 27637197 27637335 + 2 NA Intergenic AluSz|SINE|Alu 85057 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 324-533 chr8 90673719 90673925 + 2 NA Intergenic Intergenic -27739 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 579-29 chr12 116728683 116729169 + 2 NA intron (NM_024738, intron 1 of 4) Charlie1a|DNA|hAT-Charlie 9143 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 278-451 chr9 72766599 72766792 + 2 NA intron (NM_138691, intron 12 of 23) intron (NM_138691, intron 12 of 23) 107414 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 187-182 chr8 132242637 132242816 + 2 NA intron (NM_004519, intron 1 of 14) L2a|LINE|L2 -137461 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 138-106 chrX 91080712 91080798 + 2 NA Intergenic Intergenic -354084 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 491-55 chr12 125888058 125888421 + 2 NA Intergenic L1MC1|LINE|L1 95135 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 335-562 chr9 28932000 28932299 + 2 NA intron (NM_001354574, intron 2 of 5) (AAAAT)n|Simple_repeat|Simple_repeat -43194 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 461-259 chr8 49138885 49139170 + 2 NA Intergenic L1ME2|LINE|L1 66683 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 455-141 chr2 224460846 224461145 + 2 NA Intergenic L1MC2|LINE|L1 -58888 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 480-12 chr1 96497209 96497589 + 2 NA Intergenic Intergenic -123274 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 256-240 chr21 30875724 30875892 + 2 NA Intergenic Intergenic 5772 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 382-311 chr4 188551618 188551881 + 2 NA intron (NR_033869, intron 4 of 4) intron (NR_033869, intron 4 of 4) 96171 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 382-275 chr3 130880724 130881047 + 2 NA intron (NM_001199181, intron 1 of 26) intron (NM_001199181, intron 1 of 26) -13130 NM_001001485 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 202-237 chr7 26850883 26851076 + 2 NA intron (NM_003930, intron 3 of 12) intron (NM_003930, intron 3 of 12) 6744 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 291-148 chr15 57840040 57840307 + 2 NA Intergenic Intergenic 133459 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 468-185 chr22 27394295 27394633 + 2 NA Intergenic MIRb|SINE|MIR 83813 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 815-27 chr2 76834407 76835019 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -151252 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 630-19 chr12 59482037 59482563 + 2 NA Intergenic L1MA6|LINE|L1 -113729 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 372-61 chr10 127622361 127622605 + 2 NA Intergenic L1M6|LINE|L1 73134 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 239-176 chr2 86332160 86332333 + 2 NA intron (NM_001164730, intron 1 of 6) intron (NM_001164730, intron 1 of 6) 5380 NM_022912 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 161-27 chr14 54462216 54462326 + 2 NA Intergenic Intergenic -20897 NM_005776 10175 Hs.294603 NM_005776 ENSG00000100528 CNIH1 CNIH|CNIH-1|CNIL|TGAM77 cornichon family AMPA receptor auxiliary protein 1 protein-coding 373-227 chr2 210520173 210520395 + 2 NA intron (NM_001369256, intron 1 of 38) L1ME1|LINE|L1 566 NM_001369256 1373 Hs.149252 NM_001875 ENSG00000021826 CPS1 CPSASE1|PHN carbamoyl-phosphate synthase 1 protein-coding 150-74 chr4 42916664 42916804 + 2 NA intron (NM_001080476, intron 1 of 3) L1MC4|LINE|L1 23468 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 378-192 chr18 44645708 44646016 + 2 NA Intergenic L1ME4a|LINE|L1 -34211 NM_001130110 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 390-338 chr6 132850792 132851038 + 2 NA Intergenic Intergenic 33696 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 168-90 chr5 84938294 84938413 + 2 NA Intergenic Intergenic -553473 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 241-166 chr19 37659402 37659594 + 2 NA Intergenic L1MC4|LINE|L1 -3237 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 340-16 chr1 104175313 104175605 + 2 NA Intergenic L1M4b|LINE|L1 102436 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 257-90 chr12 44723215 44723428 + 2 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 152340 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 233-323 chr6 12117334 12117524 + 2 NA intron (NM_002114, intron 3 of 8) HAL1b|LINE|L1 105117 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 370-106 chr12 13428229 13428447 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -51593 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 316-53 chr10 10823976 10824231 + 2 NA intron (NM_001326327, intron 1 of 14) intron (NM_001326327, intron 1 of 14) 25378 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 228-254 chr4 107565875 107566031 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 154281 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 279-137 chr17 56464407 56464638 + 2 NA intron (NM_001370326, intron 14 of 20) L2c|LINE|L2 -129177 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 564-56 chr14 82081283 82081741 + 2 NA Intergenic Intergenic -338374 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 410-19 chr1 192353993 192354240 + 2 NA intron (NM_001039152, intron 4 of 4) (TATAGT)n|Simple_repeat|Simple_repeat 37124 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 138-93 chr8 121969537 121969651 + 2 NA Intergenic Intergenic -328154 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 315-463 chr8 27043324 27043498 + 2 NA Intergenic Intergenic 5552 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 257-457 chrX 112271204 112271373 + 2 NA intron (NM_001004308, intron 2 of 2) X8_LINE|LINE|CR1 188263 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 RTL4 Mar4|Mart4|SIRH11|ZCCHC16 retrotransposon Gag like 4 protein-coding 296-267 chr20 41824382 41824593 + 2 NA Intergenic L1MA3|LINE|L1 -206110 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 325-166 chr14 54502234 54502488 + 2 NA Intergenic MER34C2|LTR|ERV1 -7545 NM_006568 10668 Hs.59106 NM_006568 ENSG00000100532 CGRRF1 CGR19|RNF197 cell growth regulator with ring finger domain 1 protein-coding 364-370 chr5 162157870 162158135 + 2 NA Intergenic Intergenic 90360 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 314-129 chr12 45140555 45140864 + 2 NA Intergenic L2a|LINE|L2 75297 NR_037144 51054 Hs.233495 NM_015899 ENSG00000134297 PLEKHA8P1 FAPP-2|FAPP2|PLEKHA8|PLEKHA9|hFAPP2 pleckstrin homology domain containing A8 pseudogene 1 pseudo 310-45 chr10 67333095 67333349 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 70188 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 408-351 chr9 935171 935507 + 2 NA intron (NM_001363767, intron 4 of 4) intron (NM_001363767, intron 4 of 4) -41316 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 265-385 chr8 48737708 48737870 + 2 NA Intergenic Intergenic -2478 NR_157026 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 425-10 chr1 168562169 168562552 + 2 NA Intergenic L1MB1|LINE|L1 -14245 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 366-56 chr10 84955743 84955969 + 2 NA Intergenic Intergenic 243049 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 348-287 chr3 26194121 26194355 + 2 NA Intergenic L1ME4c|LINE|L1 -320543 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 355-10 chr1 87535981 87536212 + 2 NA Intergenic Intergenic -164441 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 186-151 chr7 44525513 44525626 + 2 NA intron (NM_013389, intron 10 of 19) L1M4c|LINE|L1 15761 NM_001300967 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 197-232 chr9 132755586 132755769 + 2 NA intron (NM_001317959, intron 13 of 14) intron (NM_001317959, intron 13 of 14) 85213 NM_012204 9329 Hs.22302 NM_012204 ENSG00000125484 GTF3C4 KAT12|TF3C-delta|TFIII90|TFIIIC290|TFIIIC90|TFIIICDELTA general transcription factor IIIC subunit 4 protein-coding 285-212 chr2 145576979 145577155 + 2 NA Intergenic L2a|LINE|L2 909100 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 424-71 chr14 66039525 66039885 + 2 NA Intergenic LTR37A|LTR|ERV1 -446666 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 231-328 chr7 39177092 39177242 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) 151967 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 461-83 chr15 24641361 24641648 + 2 NA Intergenic ERVL-int|LTR|ERVL -33890 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 347-105 chr12 105585023 105585326 + 2 NA Intergenic Intergenic -119029 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 137-43 chr2 74523564 74523635 + 2 NA intron (NM_133637, intron 4 of 11) Charlie4z|DNA|hAT-Charlie 2632 NM_133637 165545 Hs.191705 NM_133637 ENSG00000144045 DQX1 - DEAQ-box RNA dependent ATPase 1 protein-coding 191-136 chr3 68852886 68853010 + 2 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 79599 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 391-385 chrX 46219953 46220268 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 107564 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 469-175 chr3 42669298 42669638 + 2 NA Intergenic AluSz|SINE|Alu -15080 NR_125400 101928323 NR_125400 LOC101928323 - uncharacterized LOC101928323 ncRNA 325-320 chr21 18627723 18627967 + 2 NA intron (NR_109925, intron 2 of 3) L1MCa|LINE|L1 58319 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 390-378 chr8 86200689 86200953 + 2 NA Intergenic Intergenic 29560 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 523-247 chr6 105465916 105466288 + 2 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -63020 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 322-180 chr15 74347949 74348243 + 2 NA intron (NM_000781, intron 1 of 8) MIRc|SINE|MIR -13456 NR_045207 729739 Hs.742028 NR_045207 ENSG00000260266 PPIAP46 - peptidylprolyl isomerase A pseudogene 46 pseudo 613-134 chr8 83535769 83536302 + 2 NA Intergenic L2a|LINE|L2 132277 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 332-82 chr11 15116544 15116783 + 2 NA intron (NM_001042536, intron 1 of 12) intron (NM_001042536, intron 1 of 12) 1740 NM_001042536 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 356-16 chr1 96514445 96514652 + 2 NA Intergenic Intergenic -140423 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 123-58 chr8 120947165 120947251 + 2 NA Intergenic Intergenic -135162 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 414-152 chr2 76134246 76134650 + 2 NA Intergenic L1ME3A|LINE|L1 -423533 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 510-287 chr8 138566594 138566947 + 2 NA Intergenic L2a|LINE|L2 -69040 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 263-127 chr16 5585942 5586115 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 30222 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 580-21 chr10 106340768 106341195 + 2 NA Intergenic L2a|LINE|L2 200816 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 603-12 chr10 52014289 52014831 + 2 NA intron (NM_001098512, intron 5 of 17) THE1D-int|LTR|ERVL-MaLR 299568 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 505-16 chr1 166236326 166236615 + 2 NA Intergenic L1M2a1|LINE|L1 -69715 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 260-154 chr15 100803638 100803852 + 2 NA Intergenic Intergenic -46007 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 338-388 chr4 101553505 101553694 + 2 NA Intergenic Intergenic 205822 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 238-93 chr13 67669205 67669370 + 2 NA Intergenic Intergenic 296900 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 617-30 chr13 89579765 89580193 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -15566 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 337-496 chr6 107984810 107985085 + 2 NA Intergenic L1MEc|LINE|L1 -26739 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 297-232 chr2 145226324 145226598 + 2 NA Intergenic Intergenic 558494 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 438-298 chr9 107874517 107874926 + 2 NA Intergenic Intergenic -384952 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 480-316 chr9 83089108 83089585 + 2 NA Intergenic L1M4|LINE|L1 -26204 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 293-366 chr6 48300140 48300412 + 2 NA Intergenic Intergenic -231587 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 458-139 chr2 136208289 136208622 + 2 NA Intergenic Intergenic -90300 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 384-266 chr4 72171113 72171484 + 2 NA Intergenic Intergenic 132166 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 184-140 chr6 55694114 55694264 + 2 NA Intergenic Intergenic -114975 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 398-50 chr10 120026670 120026925 + 2 NA Intergenic AluJr|SINE|Alu 68284 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 323-546 chr8 82749555 82749869 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -162392 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 277-312 chr5 29276506 29276734 + 2 NA Intergenic Intergenic 119356 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 320-486 chr6 62818811 62819014 + 2 NA Intergenic L1P2|LINE|L1 501065 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 408-274 chr5 112097761 112098128 + 2 NA Intergenic Intergenic -62582 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 362-165 chr15 25620985 25621272 + 2 NA Intergenic L1MB3|LINE|L1 -182072 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 174-149 chr8 138370291 138370427 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 126902 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 387-400 chrX 67451857 67452104 + 2 NA Intergenic L1MA4A|LINE|L1 -92041 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 211-34 chr10 64033950 64034091 + 2 NA Intergenic Intergenic -512130 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 177-5 chr1 91260727 91260889 + 2 NA TTS (NM_001017975) TTS (NM_001017975) 144029 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 384-51 chr11 13426943 13427191 + 2 NA intron (NM_001297741, intron 1 of 7) AluJb|SINE|Alu 13212 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 190-67 chr16 50827057 50827215 + 2 NA Intergenic MLT2D|LTR|ERVL 20464 NR_146573 105371252 NR_146573 ENSG00000261703 LINC02168 - long intergenic non-protein coding RNA 2168 ncRNA 310-403 chr5 58692585 58692851 + 2 NA intron (NM_138453, intron 2 of 4) (ATTTCT)n|Simple_repeat|Simple_repeat 109643 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 405-332 chr8 124690480 124690746 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 37860 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 204-122 chr17 73921669 73921834 + 2 NA Intergenic L1MEd|LINE|L1 -93214 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 296-422 chr6 155573006 155573222 + 2 NA Intergenic L1MEf|LINE|L1 58270 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 236-24 chr1 185938322 185938470 + 2 NA intron (NM_031935, intron 11 of 106) intron (NM_031935, intron 11 of 106) 204005 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 504-215 chr5 109523096 109523551 + 2 NA Intergenic Intergenic -113349 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 200-278 chr8 126786966 126787120 + 2 NA Intergenic L1MEd|LINE|L1 -226111 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 231-55 chr11 34445960 34446140 + 2 NA intron (NM_001752, intron 1 of 12) intron (NM_001752, intron 1 of 12) 7116 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 225-348 chr8 63159273 63159438 + 2 NA Intergenic MER50B|LTR|ERV1 9087 NR_102684 101410533 Hs.163027 NR_102684 ENSG00000270673 YTHDF3-AS1 - YTHDF3 antisense RNA 1 (head to head) ncRNA 244-366 chr8 83759989 83760214 + 2 NA Intergenic MIR|SINE|MIR 356343 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 504-125 chr2 65977673 65978115 + 2 NA Intergenic AluSq|SINE|Alu 380434 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 341-162 chr15 41659104 41659404 + 2 NA Intergenic Intergenic -1158 NM_001080541 23269 Hs.187569 NM_001080541 ENSG00000174197 MGA MAD5|MXD5 MAX dimerization protein MGA protein-coding 288-119 chr14 69918137 69918366 + 2 NA intron (NM_001034852, intron 1 of 11) AluJb|SINE|Alu 38835 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 202-200 chr5 16908843 16909002 + 2 NA intron (NM_012334, intron 1 of 40) L1MB5|LINE|L1 27366 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 361-369 chr5 118674870 118675191 + 2 NA Intergenic L1M3|LINE|L1 78842 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 529-121 chr2 198522147 198522661 + 2 NA Intergenic Intergenic -147307 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 317-76 chr11 26820801 26821093 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -98887 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 206-257 chr7 112059628 112059782 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 146694 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 220-201 chr20 7650772 7650962 + 2 NA Intergenic Intergenic 279259 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 317-511 chr8 135314214 135314398 + 2 NA Intergenic Intergenic 80175 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 362-184 chr16 72919507 72919729 + 2 NA intron (NM_001164766, intron 2 of 8) intron (NM_001164766, intron 2 of 8) 128510 NM_006885 463 Hs.598297 NM_006885 ENSG00000140836 ZFHX3 ATBF1|ATBT|ZNF927 zinc finger homeobox 3 protein-coding 371-367 chr7 87660582 87660865 + 2 NA intron (NM_001134406, intron 2 of 9) L1M5|LINE|L1 32325 NM_138290 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 218-151 chr2 64164925 64165128 + 2 NA Intergenic Intergenic -20606 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 299-199 chr2 41491618 41491856 + 2 NA Intergenic Intergenic -385818 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 273-470 chr9 72882005 72882227 + 2 NA Intergenic Intergenic -8007 NR_121181 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 309-524 chr7 118743336 118743510 + 2 NA Intergenic Intergenic 518719 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 394-207 chr22 46926592 46926938 + 2 NA intron (NR_104292, intron 10 of 13) MLT2C1|LTR|ERVL -10723 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 448-65 chr12 74502157 74502570 + 2 NA Intergenic Intergenic -35472 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 409-62 chr13 30963209 30963531 + 2 NA intron (NR_148425, intron 3 of 3) intron (NR_148425, intron 3 of 3) 30714 NM_001353388 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 337-522 chr7 56633007 56633204 + 2 NA Intergenic Intergenic -94975 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 485-293 chr8 118726977 118727395 + 2 NA Intergenic Intergenic -105223 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 563-23 chr10 80820950 80821407 + 2 NA Intergenic L1PA8|LINE|L1 171381 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 270-14 chr1 118846428 118846610 + 2 NA Intergenic Intergenic 141824 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 420-226 chr5 42323212 42323502 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -100082 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 209-124 chr17 49233283 49233476 + 2 NA Intergenic Intergenic -2592 NM_178500 162466 Hs.405607 NM_178500 ENSG00000173868 PHOSPHO1 - phosphoethanolamine/phosphocholine phosphatase protein-coding 347-242 chr2 134503946 134504138 + 2 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 214958 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 345-149 chr14 48057807 48058012 + 2 NA Intergenic L1MA9|LINE|L1 -262895 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 529-5 chr1 176543182 176543568 + 2 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 80200 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 274-97 chr12 60627123 60627334 + 2 NA Intergenic Intergenic 937858 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 364-312 chr4 115028767 115028977 + 2 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 84748 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 565-19 chr10 109177871 109178242 + 2 NA Intergenic Intergenic 745190 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 805-23 chr2 166995867 166996461 + 2 NA intron (NM_152381, intron 2 of 10) L2b|LINE|L2 107677 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 155-104 chrX 155508544 155508634 + 2 NA intron (NM_018196, intron 5 of 7) L2c|LINE|L2 42049 NR_109985 101927830 Hs.638368 NR_109985 LOC101927830 - uncharacterized LOC101927830 ncRNA 266-91 chr12 73044384 73044554 + 2 NA Intergenic Intergenic -114721 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 179-65 chr3 43474163 43474295 + 2 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) -122267 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 342-197 chr17 72187503 72187784 + 2 NA Intergenic Intergenic 66623 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 226-217 chr3 27999726 27999925 + 2 NA Intergenic Intergenic -165689 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 356-456 chr7 81222050 81222303 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -299787 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 483-132 chr2 186679723 186680034 + 2 NA 3' UTR (NM_001144999, exon 30 of 30) 3' UTR (NM_001144999, exon 30 of 30) -14182 NM_177454 165215 Hs.28872 NM_177454 ENSG00000144369 FAM171B KIAA1946 family with sequence similarity 171 member B protein-coding 360-277 chr21 25165933 25166168 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 265651 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 278-370 chr6 64381169 64381354 + 2 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 574425 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 587-106 chr3 83911364 83911741 + 2 NA Intergenic LTR49-int|LTR|ERV1 958023 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 542-203 chr7 65288356 65288764 + 2 NA Intergenic L1PA16|LINE|L1 -85239 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 140-46 chr21 26997693 26997774 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -30645 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 447-50 chr11 124442985 124443342 + 2 NA Intergenic MIR1_Amn|SINE|MIR -2078 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 177-102 chr3 41980730 41980875 + 2 NA Intergenic L1M1|LINE|L1 -18699 NM_017886 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 299-372 chr5 67310062 67310219 + 2 NA Intergenic L1PA15|LINE|L1 -113341 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 293-113 chr14 53210838 53211046 + 2 NA Intergenic Intergenic 57588 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 321-323 chr2 238827733 238828031 + 2 NA Intergenic L1ME1|LINE|L1 20025 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 466-271 chr8 104712294 104712749 + 2 NA Intergenic MER68|LTR|ERVL -123497 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 377-105 chr13 58482070 58482392 + 2 NA Intergenic Intergenic -249114 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 231-87 chr13 104276833 104276954 + 2 NA Intergenic Intergenic 851693 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 289-478 chr8 134157940 134158191 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 271569 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 160-115 chr8 55037939 55038065 + 2 NA Intergenic L1ME2|LINE|L1 -64026 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 465-221 chr5 42223855 42224269 + 2 NA Intergenic LTR16A1|LTR|ERVL -48717 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 290-457 chr8 110439099 110439321 + 2 NA Intergenic ERVL-int|LTR|ERVL -463439 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 349-163 chr14 63200824 63201061 + 2 NA Intergenic Intergenic -3501 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 191-222 chr9 25757092 25757268 + 2 NA Intergenic L1MDa|LINE|L1 -22876 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 258-139 chr15 27659436 27659611 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 439792 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 463-62 chr11 95728955 95729267 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 60671 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 314-180 chr15 25499825 25500124 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -60918 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 266-441 chr8 131562835 131563080 + 2 NA Intergenic Intergenic -341136 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 343-93 chr12 7744286 7744607 + 2 NA intron (NM_203503, intron 2 of 5) intron (NM_203503, intron 2 of 5) 2929 NM_001371390 413-310 chr8 113476437 113476731 + 2 NA Intergenic LOR1-int|LTR|ERV1 -39645 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 233-374 chr8 88318560 88318774 + 2 NA intron (NM_005941, intron 1 of 9) MIR|SINE|MIR 8816 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 249-127 chr15 47500055 47500225 + 2 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -217365 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 511-106 chr19 44238010 44238510 + 2 NA TTS (NM_001289166) TTS (NM_001289166) -21620 NM_001207005 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 489-116 chr18 8929970 8930287 + 2 NA Intergenic AluSz6|SINE|Alu -172571 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 234-344 chr6 109524244 109524402 + 2 NA intron (NM_001145128, intron 29 of 40) L1MEf|LINE|L1 -41086 NM_014797 9841 Hs.409876 NM_014797 ENSG00000112365 ZBTB24 BIF1|ICF2|PATZ2|ZNF450 zinc finger and BTB domain containing 24 protein-coding 344-232 chr2 40033160 40033367 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 115629 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 150-101 chr7 52875144 52875285 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -160419 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 482-232 chr6 147671408 147671758 + 2 NA Intergenic L1ME3G|LINE|L1 162893 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 542-79 chr17 71990583 71990961 + 2 NA Intergenic L2c|LINE|L2 35207 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 453-112 chr2 76928084 76928447 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -57700 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 309-415 chr5 3418572 3418772 + 2 NA non-coding (NR_033898, exon 5 of 5) non-coding (NR_033898, exon 5 of 5) -34144 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 491-8 chr1 192715745 192716205 + 2 NA promoter-TSS (NR_039624) promoter-TSS (NR_039624) -353 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 368-187 chr16 87025165 87025496 + 2 NA Intergenic Intergenic -32454 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 264-174 chr18 35547312 35547504 + 2 NA Intergenic L1MCa|LINE|L1 -44329 NR_039771 100616257 NR_039771 ENSG00000283514 MIR3975 - microRNA 3975 ncRNA 270-254 chr4 19838574 19838820 + 2 NA Intergenic Intergenic -413208 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 496-174 chr3 35306942 35307301 + 2 NA intron (NR_110817, intron 1 of 3) HAL1ME|LINE|L1 86902 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 217-103 chr13 65983015 65983163 + 2 NA Intergenic HAL1|LINE|L1 -16660 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 517-120 chr2 3843928 3844242 + 2 NA intron (NM_001287444, intron 10 of 10) intron (NM_001287444, intron 10 of 10) 129947 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 263-205 chr2 80552802 80552999 + 2 NA intron (NM_001282599, intron 5 of 11) intron (NM_001282599, intron 5 of 11) 239521 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 1139-10 chr8 118892065 118892949 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 59378 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 384-287 chr5 34964671 34964912 + 2 NA Intergenic L1M2|LINE|L1 35198 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 317-254 chr2 151943492 151943730 + 2 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 28441 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 197-81 chr19 14956692 14956827 + 2 NA intron (NR_073589, intron 5 of 8) intron (NR_073589, intron 5 of 8) 15270 NM_012377 26658 Hs.589620 NM_012377 ENSG00000127529 OR7C2 CIT-HSP-87M17|OR19-18|OR7C3 olfactory receptor family 7 subfamily C member 2 protein-coding 344-39 chr1 240352297 240352528 + 2 NA intron (NM_001348094, intron 11 of 14) AluSx1|SINE|Alu 259743 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 358-524 chr9 136141588 136141909 + 2 NA Intergenic Intergenic -22873 NM_152833 90120 Hs.287411 NM_152833 ENSG00000238227 TMEM250 C9orf69 transmembrane protein 250 protein-coding 380-48 chr10 71586996 71587328 + 2 NA intron (NM_052836, intron 9 of 12) MIRb|SINE|MIR -75242 NR_120672 102723377 Hs.568789 NR_120672 ENSG00000223817 CDH23-AS1 C10orf106|NCRNA00223|bA327E2.3 CDH23 antisense RNA 1 ncRNA 416-118 chr14 56178061 56178324 + 2 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 59781 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 430-213 chr4 62144475 62144768 + 2 NA intron (NR_110595, intron 2 of 7) MSTA|LTR|ERVL-MaLR 17144 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 505-209 chr4 27309878 27310301 + 2 NA Intergenic Intergenic 92610 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 225-156 chr2 66940852 66941065 + 2 NA intron (NR_110169, intron 3 of 4) MamRep434|DNA|TcMar-Tigger -18468 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 352-524 chr8 59350450 59350643 + 2 NA Intergenic MIR|SINE|MIR 231336 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 257-16 chr1 109323661 109323872 + 2 NA intron (NM_001205228, intron 14 of 19) MamSINE1|SINE|tRNA-RTE -16755 NM_001265613 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 592-82 chr2 79577318 79577748 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 54350 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 217-194 chr2 198641937 198642150 + 2 NA Intergenic Intergenic -266946 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 232-103 chr14 77902071 77902236 + 2 NA intron (NM_001366485, intron 6 of 9) intron (NM_001366485, intron 6 of 9) 102044 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 298-453 chr8 52881743 52881917 + 2 NA Intergenic LTR26|LTR|ERV1 -58078 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 266-120 chr14 83380835 83381028 + 2 NA Intergenic L2a|LINE|L2 738299 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 389-94 chr13 67539073 67539325 + 2 NA Intergenic L1PA14|LINE|L1 166812 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 273-343 chr5 8244037 8244280 + 2 NA Intergenic Intergenic 213406 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 610-114 chr3 42373348 42373797 + 2 NA Intergenic Intergenic 37038 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 512-241 chr6 137255082 137255460 + 2 NA Intergenic Intergenic -35841 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 181-67 chr2 79541021 79541166 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 17910 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 262-236 chr2 211277281 211277483 + 2 NA Intergenic Intergenic 659811 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 405-202 chr3 73208905 73209225 + 2 NA Intergenic Intergenic 147406 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 343-106 chr12 66139049 66139305 + 2 NA intron (NM_016056, intron 5 of 6) intron (NM_016056, intron 5 of 6) 8426 NR_125724 103625681 Hs.504820 NR_125724 ENSG00000239335 LLPH-DT LLPH-AS1 LLPH divergent transcript ncRNA 304-138 chr14 43528689 43528849 + 2 NA Intergenic Intergenic 978514 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 402-275 chr5 86334607 86334859 + 2 NA Intergenic Intergenic 52289 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 385-21 chr10 13670795 13671081 + 2 NA intron (NM_001318336, intron 15 of 23) MIRb|SINE|MIR 36629 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 237-126 chr15 100389127 100389311 + 2 NA intron (NR_120374, intron 1 of 4) L1MC4|LINE|L1 16280 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 218-353 chr9 98363734 98363887 + 2 NA intron (NM_005458, intron 12 of 18) intron (NM_005458, intron 12 of 18) -108161 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 510-275 chr8 51360450 51360916 + 2 NA intron (NM_144651, intron 19 of 22) MER57B1|LTR|ERV1 448762 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 449-265 chr8 25726063 25726396 + 2 NA Intergenic L1PA14|LINE|L1 266996 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 420-197 chr4 33242311 33242715 + 2 NA Intergenic L1MC5a|LINE|L1 797380 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 654-108 chr6 137607605 137608212 + 2 NA Intergenic Intergenic -57738 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 195-208 chr5 158216223 158216387 + 2 NA Intergenic L1PA8|LINE|L1 193468 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 348-86 chr11 80549265 80549478 + 2 NA Intergenic L1PA16|LINE|L1 213432 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 461-13 chr1 153380593 153380962 + 2 NA Intergenic Intergenic -5156 NM_005621 6283 Hs.19413 NM_005621 ENSG00000163221 S100A12 CAAF1|CAGC|CGRP|ENRAGE|MRP-6|MRP6|p6 S100 calcium binding protein A12 protein-coding 221-40 chr10 77743118 77743260 + 2 NA Intergenic Intergenic -105381 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 273-259 chr20 43084733 43084953 + 2 NA intron (NM_133170, intron 1 of 31) L1ME4a|LINE|L1 105063 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 302-274 chr3 7665523 7665818 + 2 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -130386 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 340-78 chr11 79114072 79114403 + 2 NA intron (NM_001098816, intron 4 of 33) intron (NM_001098816, intron 4 of 33) 287872 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 370-435 chr8 52812803 52813029 + 2 NA Intergenic L1ME1|LINE|L1 -98450 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 361-490 chrX 83248844 83249128 + 2 NA Intergenic Intergenic -259304 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 276-372 chr5 63616763 63616982 + 2 NA Intergenic Intergenic 345420 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 284-258 chr3 44716684 44716862 + 2 NA intron (NM_033210, intron 2 of 3) L1ME4a|LINE|L1 4113 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 232-130 chr17 11817939 11818070 + 2 NA intron (NM_001372, intron 45 of 68) intron (NM_001372, intron 45 of 68) -64898 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 242-8 chr1 82636309 82636479 + 2 NA Intergenic MIR|SINE|MIR -266789 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 646-132 chr8 129023897 129024506 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -58200 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 356-465 chr7 154731742 154731968 + 2 NA intron (NR_157196, intron 8 of 25) Charlie20a|DNA|hAT-Charlie -196662 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 264-169 chr17 72148352 72148519 + 2 NA Intergenic L3|LINE|CR1 27415 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 235-246 chr4 34413575 34413739 + 2 NA Intergenic Intergenic -143910 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 338-369 chr4 30431192 30431449 + 2 NA Intergenic Intergenic -289049 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 316-506 chr7 15657162 15657362 + 2 NA intron (NM_005924, intron 1 of 2) L1MD1|LINE|L1 -10685 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 337-96 chr11 90878219 90878448 + 2 NA intron (NR_104190, intron 6 of 6) intron (NR_104190, intron 6 of 6) -9131 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 196-104 chr18 78846288 78846437 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -133913 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 192-107 chr2 180633748 180633878 + 2 NA Intergenic L1M5|LINE|L1 -58291 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 671-25 chr12 128764287 128764683 + 2 NA Intergenic MIR|SINE|MIR 59473 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 173-133 chr7 120028859 120028982 + 2 NA Intergenic L1MC|LINE|L1 -121545 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 152-5 chr1 153138481 153138612 + 2 NA Intergenic L1MA4A|LINE|L1 2947 NR_003062 6702 Hs.2421 NR_003062 SPRR2C - small proline rich protein 2C (pseudogene) pseudo 508-59 chr14 53164257 53164594 + 2 NA Intergenic FLAM_A|SINE|Alu 11071 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 294-362 chr5 11705386 11705575 + 2 NA intron (NM_001288717, intron 2 of 20) L1ME4a|LINE|L1 -116414 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 220-197 chr2 237467473 237467666 + 2 NA Intergenic L1MD2|LINE|L1 -18841 NM_001281474 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 501-165 chr3 63693669 63694022 + 2 NA Intergenic L1MB3|LINE|L1 41170 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 289-204 chr19 56399154 56399411 + 2 NA TTS (NR_037159) TTS (NR_037159) -4732 NM_001159860 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 354-142 chr14 69830835 69831125 + 2 NA Intergenic L1MC5|LINE|L1 19220 NR_149012 100506358 NR_149012 LOC100506358 - uncharacterized LOC100506358 ncRNA 286-39 chr10 36555255 36555529 + 2 NA Intergenic Intergenic -570465 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 579-89 chr20 56234866 56235194 + 2 NA Intergenic Intergenic -13702 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 497-213 chr4 183900542 183900932 + 2 NA intron (NR_132761, intron 1 of 2) intron (NR_132761, intron 1 of 2) -4570 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 483-43 chr11 97403177 97403559 + 2 NA Intergenic (ATCTTA)n|Simple_repeat|Simple_repeat 894943 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 254-22 chr1 202149410 202149630 + 2 NA intron (NM_001199797, intron 9 of 9) FLAM_C|SINE|Alu -4777 NM_001256129 127829 Hs.497399 NM_138795 ENSG00000143862 ARL8A ARL10B|GIE2 ADP ribosylation factor like GTPase 8A protein-coding 361-30 chr1 247847847 247848189 + 2 NA Intergenic AluSx1|SINE|Alu -6122 NM_001001959 391189 Hs.553781 NM_001001959 ENSG00000197591 OR11L1 - olfactory receptor family 11 subfamily L member 1 protein-coding 552-161 chr4 130254572 130255102 + 2 NA Intergenic AluJb|SINE|Alu -121524 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 318-556 chr8 129465091 129465334 + 2 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 18930 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 199-131 chr2 183613582 183613734 + 2 NA Intergenic Intergenic 489215 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 428-184 chr3 95552650 95552975 + 2 NA Intergenic Intergenic 130381 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 582-152 chr8 68148618 68149044 + 2 NA intron (NM_024870, intron 34 of 39) intron (NM_024870, intron 34 of 39) -181542 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 337-178 chr15 67274264 67274508 + 2 NA intron (NM_001031715, intron 3 of 20) L1MA4|LINE|L1 -19188 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 329-511 chr6 142547986 142548188 + 2 NA intron (NR_027312, intron 1 of 2) intron (NR_027312, intron 1 of 2) 89749 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 220-142 chr18 75756880 75757055 + 2 NA Intergenic Intergenic -44564 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 417-173 chr3 822396 822733 + 2 NA intron (NR_110118, intron 2 of 3) L1PA7|LINE|L1 230459 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 314-290 chr2 82714020 82714222 + 2 NA Intergenic Intergenic -142682 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 180-45 chr14 44719515 44719633 + 2 NA Intergenic Intergenic 79552 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 401-345 chr9 71461376 71461752 + 2 NA Intergenic Intergenic -14593 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 549-186 chr6 140749240 140749655 + 2 NA Intergenic L1M1|LINE|L1 65633 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 211-51 chr11 62832118 62832262 + 2 NA promoter-TSS (NM_001244666) promoter-TSS (NM_001244666) -44 NR_135084 105369332 NR_135084 ENSG00000256690 LOC105369332 - uncharacterized LOC105369332 ncRNA 465-142 chr2 166457468 166457796 + 2 NA intron (NR_045628, intron 9 of 25) intron (NR_045628, intron 9 of 25) 29339 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 214-257 chr5 20374055 20374180 + 2 NA intron (NM_001349558, intron 1 of 15) MIRb|SINE|MIR 68566 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 322-213 chr18 3497177 3497399 + 2 NA 3' UTR (NM_001242764, exon 10 of 10) 3' UTR (NM_001242764, exon 10 of 10) 31038 NR_110429 100505592 Hs.635114 NR_110428 ENSG00000266835 GAPLINC LINC01540 gastric adenocarcinoma associated, positive CD44 regulator, long intergenic non-coding RNA ncRNA 221-20 chr1 178139038 178139183 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 45006 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 196-271 chr9 81618299 81618473 + 2 NA intron (NM_005077, intron 9 of 19) intron (NM_005077, intron 9 of 19) 71149 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 225-345 chr8 41032178 41032341 + 2 NA Intergenic MER30|DNA|hAT-Charlie -134433 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 553-17 chr10 52728616 52729028 + 2 NA intron (NR_155748, intron 1 of 2) L1MC5|LINE|L1 26582 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 677-41 chr19 37936864 37937407 + 2 NA intron (NM_015073, intron 1 of 21) AluJo|SINE|Alu 29927 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 276-160 chr15 24731377 24731633 + 2 NA Intergenic HERVL74-int|LTR|ERVL 56111 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 608-61 chr18 60313738 60314144 + 2 NA Intergenic L1M3|LINE|L1 58834 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 229-7 chr1 66094543 66094716 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -43911 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 329-345 chr22 48330807 48331026 + 2 NA Intergenic Intergenic 56552 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 391-211 chr20 52624162 52624467 + 2 NA intron (NR_110038, intron 2 of 2) MLT1A|LTR|ERVL-MaLR 3476 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 421-315 chr8 139815882 139816099 + 2 NA intron (NM_001160372, intron 21 of 22) MIR|SINE|MIR -112867 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 366-171 chr18 4547786 4548046 + 2 NA Intergenic L1MEi|LINE|L1 -92609 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 293-296 chr4 45802309 45802501 + 2 NA Intergenic L1MCa|LINE|L1 321649 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 201-265 chrX 88436472 88436646 + 2 NA Intergenic L1PBa|LINE|L1 -310666 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 295-424 chr7 3168193 3168391 + 2 NA Intergenic Intergenic -9719 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 327-123 chr12 101105088 101105258 + 2 NA intron (NM_001286616, intron 21 of 26) L1MEg|LINE|L1 -33385 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 487-12 chr1 80814105 80814496 + 2 NA Intergenic Intergenic 173013 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 391-358 chr8 108317355 108317703 + 2 NA Intergenic L1MC5|LINE|L1 -68812 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 428-117 chr2 14042850 14043251 + 2 NA Intergenic AluSx1|SINE|Alu 357908 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 354-292 chr3 45853669 45853962 + 2 NA intron (NM_001276378, intron 3 of 11) intron (NM_001276378, intron 3 of 11) -11696 NR_075080 54585 Hs.30824 NM_020347 ENSG00000163818 LZTFL1 BBS17 leucine zipper transcription factor like 1 protein-coding 323-424 chr5 97676085 97676273 + 2 NA Intergenic L1PA13|LINE|L1 -164579 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 258-14 chr1 113340578 113340719 + 2 NA Intergenic Intergenic -49867 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 335-46 chr10 37360906 37361124 + 2 NA Intergenic L1PA17|LINE|L1 51829 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 281-388 chr6 54227635 54227785 + 2 NA intron (NM_138569, intron 10 of 12) HAL1|LINE|L1 -80731 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 836-25 chr15 70003457 70004049 + 2 NA Intergenic AluSx1|SINE|Alu 75715 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 204-291 chr8 117332607 117332791 + 2 NA Intergenic Intergenic -188014 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 351-371 chr5 22816949 22817236 + 2 NA intron (NM_001364105, intron 1 of 15) intron (NM_001364105, intron 1 of 15) 36252 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 416-273 chr5 60182068 60182349 + 2 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) 190455 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 206-131 chr2 171290288 171290431 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -59066 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 297-444 chr7 68716208 68716373 + 2 NA Intergenic Intergenic 696037 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 181-129 chr5 122986131 122986254 + 2 NA intron (NM_014035, intron 3 of 6) L2b|LINE|L2 50533 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 521-37 chr10 111470020 111470409 + 2 NA Intergenic MER81|DNA|hAT-Blackjack 355923 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 284-169 chr18 6345526 6345754 + 2 NA intron (NM_001365765, intron 1 of 18) L1MA10|LINE|L1 13390 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 388-293 chr5 133582311 133582579 + 2 NA intron (NM_015082, intron 2 of 15) intron (NM_015082, intron 2 of 15) 30096 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 459-87 chr14 86164580 86164889 + 2 NA Intergenic Intergenic 230056 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 195-194 chr5 41133234 41133349 + 2 NA Intergenic Intergenic -61949 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 580-142 chr4 106511300 106511713 + 2 NA Intergenic Intergenic 77882 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 234-32 chr10 28243183 28243362 + 2 NA intron (NR_134518, intron 1 of 16) Charlie1a|DNA|hAT-Charlie 38851 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 243-273 chr3 3716295 3716446 + 2 NA intron (NR_149025, intron 5 of 5) MLT1A|LTR|ERVL-MaLR -83061 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 649-40 chr18 25236861 25237429 + 2 NA intron (NM_001308225, intron 2 of 6) intron (NM_001308225, intron 2 of 6) 115021 NM_015461 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 306-104 chr12 58700781 58701051 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 80800 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 257-133 chr16 31899927 31900170 + 2 NA intron (NR_049749, intron 4 of 4) (AT)n|Simple_repeat|Simple_repeat 26241 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 541-252 chr9 26295486 26295962 + 2 NA Intergenic Intergenic 229049 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 180-134 chr5 40244982 40245108 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 192754 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 362-281 chr3 120686495 120686854 + 2 NA TTS (NM_001363965) TTS (NM_001363965) -4435 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 176-24 chr14 43227712 43227807 + 2 NA Intergenic Intergenic 1279524 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 466-123 chr2 50426361 50426808 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -78828 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 321-423 chr4 70534783 70535056 + 2 NA Intergenic AluSg|SINE|Alu 16350 NM_212557 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 325-560 chr8 136359762 136359933 + 2 NA Intergenic L1MEc|LINE|L1 -170951 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 274-223 chr2 155198576 155198722 + 2 NA Intergenic Intergenic 499954 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 266-263 chr3 132278566 132278735 + 2 NA Intergenic Intergenic -38757 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 206-113 chr2 51109739 51109865 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 77201 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 312-99 chr12 24686656 24686850 + 2 NA Intergenic L2a|LINE|L2 -102585 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 463-33 chr10 30389915 30390214 + 2 NA Intergenic L1MA9|LINE|L1 -18157 NR_120609 729668 Hs.652158 NR_003524 GOLGA2P6 - GOLGA2 pseudogene 6 pseudo 158-122 chr9 5923948 5924049 + 2 NA intron (NM_001017969, intron 7 of 7) intron (NM_001017969, intron 7 of 7) 33109 NM_005511 2315 Hs.154069 NM_005511 ENSG00000120215 MLANA MART-1|MART1 melan-A protein-coding 371-301 chr5 8577979 8578198 + 2 NA Intergenic L1MB8|LINE|L1 117163 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 348-156 chr15 57582007 57582257 + 2 NA Intergenic Intergenic -9772 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 230-258 chr4 41340386 41340600 + 2 NA Intergenic Intergenic -19114 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 440-172 chr3 191770195 191770486 + 2 NA Intergenic MLT2F|LTR|ERVL 309177 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 301-215 chr2 105929032 105929305 + 2 NA Intergenic Intergenic 77321 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 373-338 chr5 130865655 130865908 + 2 NA Intergenic Intergenic 299475 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 211-324 chr9 80164474 80164639 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 189533 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 247-102 chr13 58327145 58327298 + 2 NA Intergenic Intergenic -94104 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 244-104 chr15 25124259 25124394 + 2 NA intron (NR_146177, intron 61 of 147) L1MC4a|LINE|L1 7781 NR_023915 3653 Hs.555970 NR_023915 IPW NCRNA00002 imprinted in Prader-Willi syndrome ncRNA 532-173 chr3 122210650 122211136 + 2 NA intron (NM_001178065, intron 1 of 6) L1PA10|LINE|L1 26566 NM_001178065 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 152-96 chr8 141957007 141957100 + 2 NA Intergenic L1ME3B|LINE|L1 -170740 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 371-329 chr5 169086065 169086405 + 2 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 73008 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 256-235 chr20 53166786 53166975 + 2 NA intron (NM_173485, intron 1 of 2) L2a|LINE|L2 -18403 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 279-360 chr6 51705692 51705920 + 2 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 83936 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 352-176 chr16 82393766 82394004 + 2 NA Intergenic L1ME1|LINE|L1 -223661 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 293-409 chr7 79705465 79705678 + 2 NA Intergenic L1M3d|LINE|L1 251611 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 464-221 chr6 136217869 136218311 + 2 NA Intergenic L3|LINE|CR1 32221 NM_001318738 113115 Hs.121536 NM_138419 ENSG00000146410 MTFR2 DUFD1|FAM54A mitochondrial fission regulator 2 protein-coding 317-66 chr10 107952696 107952940 + 2 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 116475 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 329-358 chr3 40426947 40427184 + 2 NA intron (NM_001248, intron 10 of 10) intron (NM_001248, intron 10 of 10) 26243 NR_040100 285266 Hs.619663 NR_040100 ENSG00000223797 ENTPD3-AS1 - ENTPD3 antisense RNA 1 ncRNA 324-28 chr1 166018838 166019047 + 2 NA Intergenic Intergenic 111021 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 178-46 chr14 68620609 68620767 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 8099 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 337-240 chr2 33438184 33438371 + 2 NA intron (NM_170672, intron 1 of 18) intron (NM_170672, intron 1 of 18) 1929 NM_001349975 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 210-300 chr8 131868685 131868886 + 2 NA Intergenic MIRb|SINE|MIR -35308 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 295-385 chr5 119572755 119572922 + 2 NA Intergenic Intergenic -56720 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 309-533 chr8 53625610 53625768 + 2 NA Intergenic L1MB3|LINE|L1 -101724 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 460-29 chr10 28206547 28206944 + 2 NA intron (NR_134517, intron 2 of 16) Kanga2_a|DNA|TcMar-Tc2 75378 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 414-100 chr15 82668194 82668437 + 2 NA intron (NM_001278512, intron 14 of 26) intron (NM_001278512, intron 14 of 26) -5640 NM_001348441 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 EIEE48|NAPTB adaptor related protein complex 3 subunit beta 2 protein-coding 504-206 chr4 179019730 179020099 + 2 NA Intergenic Intergenic -1111978 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 615-72 chr20 42039676 42040184 + 2 NA Intergenic L1MA9|LINE|L1 -421553 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 440-270 chr9 79951061 79951323 + 2 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) -23831 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 282-122 chr14 46045216 46045450 + 2 NA Intergenic L1M1|LINE|L1 -18826 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 181-93 chr3 71593256 71593379 + 2 NA Intergenic Intergenic -9328 NM_001244810 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 585-104 chr4 43492216 43492602 + 2 NA intron (NR_146993, intron 1 of 2) MLT1A0|LTR|ERVL-MaLR 134 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 305-459 chr5 171023525 171023689 + 2 NA intron (NM_022897, intron 14 of 27) L1MEf|LINE|L1 161589 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 345-115 chr12 21621091 21621336 + 2 NA Intergenic Intergenic -16366 NM_021957 2998 Hs.82614 NM_021957 ENSG00000111713 GYS2 - glycogen synthase 2 protein-coding 193-66 chr15 65781971 65782131 + 2 NA intron (NM_005848, intron 1 of 31) intron (NM_005848, intron 1 of 31) 10242 NM_001144823 10260 Hs.654567 NM_005848 ENSG00000174485 DENND4A IRLB|MYCPBP DENN domain containing 4A protein-coding 203-58 chr14 40196828 40196989 + 2 NA Intergenic L1MEd|LINE|L1 -757803 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 317-414 chr6 64360184 64360473 + 2 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 553492 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 416-308 chr7 48360382 48360642 + 2 NA intron (NM_152701, intron 31 of 61) intron (NM_152701, intron 31 of 61) 189054 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 388-270 chr5 21141439 21141677 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -317922 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 304-473 chr6 159910903 159911165 + 2 NA Intergenic L2c|LINE|L2 20046 NM_002377 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 318-507 chr7 48797398 48797692 + 2 NA Intergenic L1MA9|LINE|L1 -127002 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 648-82 chr20 58504403 58504831 + 2 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 10321 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 186-81 chr2 77436377 77436490 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 85943 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 350-59 chr10 107035353 107035566 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 129247 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 371-404 chr8 141961450 141961754 + 2 NA Intergenic Intergenic -175289 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 427-226 chr6 77438848 77439158 + 2 NA Intergenic L1MC4a|LINE|L1 25019 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 499-205 chr5 68461115 68461499 + 2 NA Intergenic L1ME4a|LINE|L1 168730 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 311-324 chr22 35176069 35176351 + 2 NA intron (NR_126356, intron 2 of 5) MSTB2|LTR|ERVL-MaLR 54846 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 341-294 chr20 25164788 25165119 + 2 NA Intergenic MER41-int|LTR|ERV1 -16163 NR_027091 284798 Hs.334934 NR_027091 ENSG00000230725 LOC284798 - uncharacterized LOC284798 ncRNA 342-302 chr22 42010035 42010212 + 2 NA intron (NM_152613, intron 1 of 5) L1M4|LINE|L1 11335 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 228-36 chr10 49054879 49055099 + 2 NA intron (NM_001031746, intron 5 of 7) intron (NM_001031746, intron 5 of 7) 60533 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 452-50 chr12 8098087 8098440 + 2 NA TTS (NR_024260) TTS (NR_024260) 15989 NM_015509 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 387-173 chr2 83797638 83797908 + 2 NA Intergenic L1MB7|LINE|L1 274959 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 132-82 chr7 126063129 126063198 + 2 NA Intergenic L1MA4|LINE|L1 -798872 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 324-84 chr11 40778136 40778377 + 2 NA intron (NM_020929, intron 1 of 4) L1PA15-16|LINE|L1 -485126 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 372-65 chr11 8481044 8481255 + 2 NA intron (NM_001352388, intron 1 of 14) intron (NM_001352388, intron 1 of 14) 112827 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 229-262 chr3 159993151 159993315 + 2 NA intron (NM_001354582, intron 3 of 5) intron (NM_001354582, intron 3 of 5) 4398 NM_001354582 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 232-114 chr15 79235445 79235607 + 2 NA intron (NR_038997, intron 1 of 1) intron (NR_038997, intron 1 of 1) 25738 NR_029705 406960 NR_029705 ENSG00000207695 MIR184 EDICT|MIRN184|miR-184 microRNA 184 ncRNA 245-235 chr3 107392145 107392343 + 2 NA Intergenic L2c|LINE|L2 -10085 NR_126332 101929579 Hs.552750 NR_126332 LOC101929579 - uncharacterized LOC101929579 ncRNA 388-189 chr20 54707002 54707303 + 2 NA Intergenic L3b|LINE|CR1 231559 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 304-320 chr22 48811182 48811458 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 31025 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 301-221 chr2 118365949 118366106 + 2 NA Intergenic Intergenic -179641 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 311-408 chr5 63851849 63852029 + 2 NA Intergenic Intergenic 110353 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 350-305 chr3 41545787 41545996 + 2 NA intron (NR_136342, intron 30 of 34) L1MEf|LINE|L1 346386 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 210-58 chr12 23665030 23665207 + 2 NA intron (NM_152989, intron 10 of 17) intron (NM_152989, intron 10 of 17) -80532 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 303-82 chr12 2120127 2120383 + 2 NA intron (NM_199460, intron 2 of 49).2 intron (NM_199460, intron 2 of 49).2 66970 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 234-242 chr3 90015162 90015347 + 2 NA Intergenic L1M4|LINE|L1 907633 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 536-186 chr5 105711296 105711658 + 2 NA Intergenic Intergenic 612003 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 249-27 chr1 192196948 192197190 + 2 NA Intergenic Intergenic 38607 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 527-20 chr10 6675806 6676219 + 2 NA Intergenic L1PA8|LINE|L1 40942 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 511-90 chr17 11478943 11479295 + 2 NA intron (NM_001173462, intron 3 of 4) L1MCa|LINE|L1 -119351 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 267-341 chr5 103178395 103178609 + 2 NA intron (NM_001345878, intron 23 of 28) L1M5|LINE|L1 58201 NM_001345873 23262 Hs.212046 NM_015216 ENSG00000145725 PPIP5K2 CFAP160|DFNB100|HISPPD1|IP7K2|VIP2 diphosphoinositol pentakisphosphate kinase 2 protein-coding 610-131 chr5 7625157 7625642 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 225734 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 629-124 chr8 13341003 13341515 + 2 NA intron (NM_024767, intron 4 of 4) intron (NM_024767, intron 4 of 4) -64475 NM_001348083 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 280-73 chr11 42184916 42185067 + 2 NA Intergenic Intergenic 68699 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 438-149 chr20 52212063 52212351 + 2 NA Intergenic HAL1|LINE|L1 -20222 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 165-101 chr5 133077896 133078024 + 2 NA intron (NM_002154, intron 7 of 18) intron (NM_002154, intron 7 of 18) 25947 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 378-79 chr11 48666546 48666793 + 2 NA Intergenic ALR/Alpha|Satellite|centr 177876 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 586-158 chr8 122756025 122756368 + 2 NA Intergenic Intergenic -25459 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 207-50 chr11 7023214 7023359 + 2 NA intron (NM_176822, intron 1 of 11) intron (NM_176822, intron 1 of 11) 2817 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 408-167 chr2 136559455 136559739 + 2 NA Intergenic Intergenic -205948 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 402-357 chr8 135468967 135469220 + 2 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 11637 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 317-18 chr1 96215697 96215900 + 2 NA Intergenic L2b|LINE|L2 158327 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 608-17 chr10 83063698 83064199 + 2 NA Intergenic Intergenic 613141 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 311-38 chr1 236388301 236388501 + 2 NA Intergenic L1M5|LINE|L1 -5885 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 310-312 chr3 2808721 2808898 + 2 NA intron (NM_175607, intron 6 of 24) intron (NM_175607, intron 6 of 24) -83406 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 273-380 chr6 10076580 10076735 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -327845 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 493-290 chr8 23090330 23090726 + 2 NA intron (NR_046173, intron 2 of 3) LOR1a|LTR|ERV1 6173 NR_046173 254896 Hs.735240 NR_046173 ENSG00000284948 LOC254896 - uncharacterized LOC254896 ncRNA 593-58 chr17 32598698 32599183 + 2 NA intron (NM_001303279, intron 21 of 21) Tigger1|DNA|TcMar-Tigger 111947 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 278-99 chr14 29924074 29924346 + 2 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 2886 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 372-163 chr15 56869065 56869320 + 2 NA Intergenic Intergenic -48898 NM_001322151 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 315-224 chr2 13484554 13484793 + 2 NA Intergenic Intergenic -477660 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 859-37 chr8 77670756 77671500 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 220431 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 273-460 chr8 131114895 131115080 + 2 NA Intergenic L1MA1|LINE|L1 -74078 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 227-143 chr18 36272687 36272867 + 2 NA TTS (NM_017947) TTS (NM_017947) -24936 NM_025135 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 364-388 chr6 103254528 103254781 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 1604892 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 504-18 chr1 230459326 230459746 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -33204 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 611-51 chr16 54611868 54612435 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 236082 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 322-460 chr6 69666156 69666359 + 2 NA Intergenic MIRb|SINE|MIR 130209 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 407-212 chr3 179181396 179181721 + 2 NA intron (NM_006218, intron 1 of 20) intron (NM_006218, intron 1 of 20) 33201 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 468-159 chr2 138227082 138227386 + 2 NA Intergenic HAL1b|LINE|L1 125350 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 402-50 chr11 79326425 79326681 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 75556 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 315-161 chr15 96023599 96023820 + 2 NA Intergenic AluSx1|SINE|Alu 104132 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 474-304 chr9 10910404 10910814 + 2 NA Intergenic Intergenic 297403 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 387-121 chr15 72887670 72887969 + 2 NA Intergenic Intergenic -104061 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 484-71 chr14 101209088 101209411 + 2 NA Intergenic AluSz|SINE|Alu 88393 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 431-119 chr2 13160867 13161197 + 2 NA Intergenic X8_LINE|LINE|CR1 -154019 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 214-91 chr13 73244183 73244359 + 2 NA Intergenic Intergenic 185266 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 127-55 chr3 89125076 89125153 + 2 NA intron (NM_182644, intron 1 of 6) intron (NM_182644, intron 1 of 6) 17493 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 412-137 chr18 69990477 69990805 + 2 NA Intergenic L1MB1|LINE|L1 -33842 NM_001303619 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 400-16 chr1 172243655 172243988 + 2 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -98986 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 471-99 chr16 73445962 73446272 + 2 NA Intergenic Intergenic 59312 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 422-202 chr4 1124552 1124815 + 2 NA intron (NR_134676, intron 1 of 2) MER2|DNA|TcMar-Tigger -1519 NR_033768 100379220 Hs.635208 NR_033768 ENSG00000215367 TMED11P p24a1|p24alpha1 transmembrane p24 trafficking protein 11, pseudogene pseudo 206-53 chr12 18783446 18783620 + 2 NA Intergenic MER4A|LTR|ERV1 45414 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 586-101 chr3 109914928 109915292 + 2 NA Intergenic L1PBa|LINE|L1 312282 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 363-119 chr13 56538597 56538946 + 2 NA Intergenic L1MA8|LINE|L1 -602147 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 685-93 chr8 50211702 50212199 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 47819 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 198-68 chr14 73892338 73892461 + 2 NA intron (NR_040251, intron 2 of 11) intron (NR_040251, intron 2 of 11) 5540 NR_040251 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 304-357 chr3 144073412 144073599 + 2 NA Intergenic Intergenic 100424 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 425-24 chr10 4530250 4530497 + 2 NA Intergenic HAL1|LINE|L1 123904 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 339-60 chr10 39037660 39037915 + 2 NA Intergenic ALR/Alpha|Satellite|centr 341191 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 399-9 chr1 119593105 119593462 + 2 NA Intergenic L1MC1|LINE|L1 6008 NR_036540 644242 Hs.515383 NR_036540 ENSG00000260941 LINC00622 - long intergenic non-protein coding RNA 622 ncRNA 346-393 chr5 89817575 89817904 + 2 NA Intergenic Intergenic 198981 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 626-147 chr9 35242318 35242736 + 2 NA intron (NM_006377, intron 5 of 38) L1MB2|LINE|L1 80518 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 777-21 chr14 53912999 53913645 + 2 NA Intergenic Intergenic 35162 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 340-341 chr22 24499204 24499445 + 2 NA intron (NM_016327, intron 1 of 9) intron (NM_016327, intron 1 of 9) 3992 NM_016327 51733 Hs.731656 NM_016327 ENSG00000100024 UPB1 BUP1 beta-ureidopropionase 1 protein-coding 472-154 chr2 80107265 80107563 + 2 NA intron (NM_001282598, intron 7 of 17) LTR28B|LTR|ERV1 197338 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 321-319 chr2 217322165 217322385 + 2 NA intron (NR_026597, intron 10 of 12) intron (NR_026597, intron 10 of 12) 39542 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 373-249 chr22 28863751 28864012 + 2 NA Intergenic AluSz|SINE|Alu -19691 NM_001206998 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 357-481 chr9 77651617 77651884 + 2 NA Intergenic Intergenic -3428 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 279-198 chr2 148860031 148860279 + 2 NA Intergenic Intergenic -15072 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 277-432 chr8 129206186 129206343 + 2 NA Intergenic Intergenic 34976 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 454-219 chr3 169694472 169694879 + 2 NA Intergenic Intergenic -30963 NM_001366466 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 313-219 chr19 23365381 23365685 + 2 NA intron (NM_001300951, intron 2 of 2) L1MB2|LINE|L1 29938 NM_001300951 7644 Hs.58834 NM_003430 ENSG00000167232 ZNF91 HPF7|HTF10 zinc finger protein 91 protein-coding 372-478 chr8 62453218 62453440 + 2 NA intron (NM_001304533, intron 1 of 6) L1PREC2|LINE|L1 204475 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 223-130 chr18 53040543 53040696 + 2 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -196482 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 540-207 chr8 74936510 74936934 + 2 NA Intergenic L1MA2|LINE|L1 -47783 NM_031461 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 246-109 chr14 36389488 36389636 + 2 NA Intergenic Intergenic -68886 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 780-17 chr12 114220998 114221480 + 2 NA Intergenic MIRb|SINE|MIR 20531 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 335-257 chr2 116616430 116616658 + 2 NA Intergenic L1MB5|LINE|L1 -1198147 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 242-271 chr4 89084634 89084811 + 2 NA Intergenic L1PA7|LINE|L1 -27537 NM_014883 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 349-475 chr7 64397096 64397283 + 2 NA Intergenic ALR/Alpha|Satellite|centr -36504 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 373-404 chr8 74805194 74805563 + 2 NA Intergenic Intergenic -19156 NM_001324403 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 278-389 chr7 19851507 19851680 + 2 NA Intergenic Intergenic -77976 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 406-288 chr8 25736934 25737239 + 2 NA Intergenic Intergenic 277853 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 733-31 chr2 22661410 22661950 + 2 NA Intergenic AluY|SINE|Alu 125201 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 397-48 chr11 43214077 43214322 + 2 NA Intergenic Intergenic 55170 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 151-29 chr16 78278217 78278311 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 178610 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 511-260 chr8 85839300 85839677 + 2 NA Intergenic Intergenic -11546 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 396-24 chr1 171623468 171623847 + 2 NA intron (NM_001368164, intron 1 of 2) intron (NM_001368164, intron 1 of 2) 3894 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 198-258 chr9 75366906 75367073 + 2 NA Intergenic Intergenic 278475 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 372-415 chr5 146555987 146556245 + 2 NA Intergenic Intergenic -40003 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 253-423 chr8 144901627 144901791 + 2 NA promoter-TSS (NM_001363101) promoter-TSS (NM_001363101) -256 NM_001363104 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 1182-5 chr14 40225233 40226123 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -729033 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 356-248 chr2 80218015 80218245 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 86622 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 242-76 chr12 33976713 33976895 + 2 NA Intergenic L1P1|LINE|L1 -45692 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 239-8 chr1 78820323 78820527 + 2 NA Intergenic Intergenic 170594 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 233-114 chr16 10667787 10667989 + 2 NA intron (NM_144674, intron 5 of 6) AluSx|SINE|Alu 27042 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 377-24 chr1 184416409 184416653 + 2 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 29502 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 273-352 chr5 46248654 46248844 + 2 NA Intergenic ALR/Alpha|Satellite|centr -552369 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 271-490 chrX 79213478 79213695 + 2 NA Intergenic L1PREC2|LINE|L1 42614 NM_032553 84636 Hs.326713 NM_032553 ENSG00000147138 GPR174 FKSG79|GPCR17|LYPSR3 G protein-coupled receptor 174 protein-coding 433-264 chr7 46920246 46920520 + 2 NA Intergenic Intergenic -223261 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 155-13 chr1 152054616 152054727 + 2 NA Intergenic Intergenic -17667 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 202-15 chr1 194008828 194008954 + 2 NA Intergenic Intergenic 704146 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 258-107 chr13 73393519 73393682 + 2 NA Intergenic Intergenic -170644 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 729-65 chr5 155186553 155187044 + 2 NA Intergenic L2b|LINE|L2 173043 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 199-25 chr10 67531040 67531232 + 2 NA intron (NM_001127384, intron 4 of 17) THE1B-int|LTR|ERVL-MaLR -127726 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 224-114 chr17 55594364 55594576 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie 128394 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 529-167 chr4 170827970 170828422 + 2 NA Intergenic HAL1M8|LINE|L1 -84461 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 180-163 chr8 25306353 25306462 + 2 NA intron (NM_024940, intron 11 of 51) intron (NM_024940, intron 11 of 51) -38995 NR_106936 102465527 NR_106936 ENSG00000274988 MIR6876 hsa-mir-6876 microRNA 6876 ncRNA 295-388 chr5 144120355 144120589 + 2 NA Intergenic L1PREC2|LINE|L1 50187 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 304-215 chr18 71463602 71463762 + 2 NA Intergenic L1ME2|LINE|L1 115274 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 172-138 chr8 115952909 115953065 + 2 NA intron (NR_046215, intron 12 of 13) intron (NR_046215, intron 12 of 13) -284012 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 332-500 chr7 105234718 105234986 + 2 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 34225 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 459-254 chr6 10041852 10042188 + 2 NA Intergenic Intergenic -362482 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 348-327 chr3 155475384 155475632 + 2 NA Intergenic L1MA1|LINE|L1 -10295 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 456-236 chr4 143418769 143419215 + 2 NA intron (NM_207123, intron 2 of 10) intron (NM_207123, intron 2 of 10) 75532 NR_036091 100423017 NR_036091 ENSG00000265623 MIR3139 - microRNA 3139 ncRNA 842-28 chr20 58489298 58489870 + 2 NA intron (NR_130908, intron 1 of 1) AluSq|SINE|Alu 25354 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 376-96 chr13 88437252 88437559 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -103424 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 588-8 chr1 224946705 224947223 + 2 NA intron (NM_001349912, intron 1 of 5) AluSx|SINE|Alu 17289 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 364-300 chr4 35480710 35481004 + 2 NA Intergenic L2a|LINE|L2 763082 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 525-262 chr8 99584034 99584394 + 2 NA intron (NM_017890, intron 33 of 61) intron (NM_017890, intron 33 of 61) -47353 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 273-243 chr2 187031225 187031396 + 2 NA Intergenic L1MA4A|LINE|L1 -182140 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 696-90 chr6 73539858 73540383 + 2 NA Intergenic MER20|DNA|hAT-Charlie -19088 NM_001402 1915 Hs.535192 NM_001402 ENSG00000156508 EEF1A1 CCS-3|CCS3|EE1A1|EEF-1|EEF1A|EF-Tu|EF1A|GRAF-1EF|HNGC:16303|LENG7|PTI1|eEF1A-1 eukaryotic translation elongation factor 1 alpha 1 protein-coding 290-79 chr11 70920257 70920495 + 2 NA intron (NM_012309, intron 9 of 24) AluJo|SINE|Alu -48008 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 641-3 chr1 90528357 90528797 + 2 NA Intergenic Intergenic -129173 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 270-404 chr8 118697733 118697934 + 2 NA intron (NR_038210, intron 3 of 4) intron (NR_038210, intron 3 of 4) -75870 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 318-392 chr4 41694230 41694421 + 2 NA intron (NM_001330786, intron 22 of 22) intron (NM_001330786, intron 22 of 22) 54645 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 370-45 chr10 56112662 56113003 + 2 NA Intergenic L1M5|LINE|L1 248427 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 329-559 chr8 15991353 15991602 + 2 NA Intergenic L1M2|LINE|L1 194795 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 234-254 chr3 116829822 116830050 + 2 NA Intergenic L1M5|LINE|L1 20431 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 626-45 chr16 82570587 82571035 + 2 NA Intergenic L1MC|LINE|L1 -56158 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 419-191 chr3 95900754 95901135 + 2 NA Intergenic Intergenic -217751 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 339-179 chr15 72437752 72438029 + 2 NA intron (NR_135678, intron 1 of 3) L1MB3|LINE|L1 36349 NR_135678 105370888 Hs.540241 NR_135678 ENSG00000261423 TMEM202-AS1 - TMEM202 antisense RNA 1 ncRNA 259-186 chr2 25570784 25570955 + 2 NA intron (NM_001320937, intron 8 of 8) L2a|LINE|L2 79353 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 354-369 chr5 36275989 36276234 + 2 NA intron (NM_001323279, intron 1 of 12) intron (NM_001323279, intron 1 of 12) 25791 NM_001323279 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 247-103 chr13 64935571 64935756 + 2 NA Intergenic L2c|LINE|L2 -859652 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 550-230 chr8 113695748 113696211 + 2 NA Intergenic L1M4|LINE|L1 -259040 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 606-161 chr8 89139152 89139648 + 2 NA Intergenic MER3|DNA|hAT-Charlie 618311 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 378-226 chr2 65465108 65465305 + 2 NA Intergenic Intergenic -32607 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 288-438 chr8 63197464 63197711 + 2 NA intron (NM_152758, intron 4 of 4) intron (NM_152758, intron 4 of 4) 28584 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 254-33 chr10 16899749 16899920 + 2 NA intron (NM_001081, intron 53 of 66) intron (NM_001081, intron 53 of 66) -82380 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 241-412 chr8 135944893 135945092 + 2 NA Intergenic MIR|SINE|MIR 487536 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 501-149 chr22 33287486 33287888 + 2 NA intron (NM_133642, intron 12 of 14) intron (NM_133642, intron 12 of 14) 148982 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 368-484 chr9 80468964 80469282 + 2 NA Intergenic Intergenic 494100 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 318-361 chr3 89087811 89088092 + 2 NA Intergenic Intergenic -19670 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 288-57 chr10 84680345 84680566 + 2 NA Intergenic Intergenic 255286 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 226-365 chr8 135285194 135285356 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 51144 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 325-206 chr16 80227119 80227297 + 2 NA intron (NR_120307, intron 2 of 5) MLT1H-int|LTR|ERVL-MaLR -313526 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 381-232 chr21 31029195 31029512 + 2 NA Intergenic L1ME3C|LINE|L1 9123 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 212-42 chr10 66302640 66302816 + 2 NA intron (NM_001127384, intron 12 of 17) L1MD3|LINE|L1 -623308 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 265-269 chr4 64958996 64959202 + 2 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 45401 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 371-31 chr1 235729388 235729732 + 2 NA intron (NM_000081, intron 37 of 52) intron (NM_000081, intron 37 of 52) -78806 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 155-71 chr4 35296041 35296157 + 2 NA Intergenic Intergenic 947840 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 430-300 chr7 139864165 139864513 + 2 NA intron (NM_001366537, intron 1 of 11) L1M5|LINE|L1 35075 NM_030984 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 293-377 chr6 101862772 101863004 + 2 NA intron (NM_001166247, intron 10 of 16) intron (NM_001166247, intron 10 of 16) 463903 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 198-79 chr16 18047451 18047616 + 2 NA Intergenic Intergenic 285129 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 309-262 chr2 125899514 125899784 + 2 NA Intergenic L2a|LINE|L2 218336 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 359-109 chr12 16131896 16132145 + 2 NA Intergenic Intergenic 145665 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 385-135 chr17 60430241 60430557 + 2 NA intron (NM_181707, intron 5 of 5) L1MC5a|LINE|L1 7910 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 134-69 chr5 88133281 88133376 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 135517 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 269-45 chr10 33516856 33517008 + 2 NA Intergenic Intergenic -182027 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 390-282 chr5 8083147 8083488 + 2 NA Intergenic MER49|LTR|ERV1 214169 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 155-70 chr4 32610082 32610218 + 2 NA Intergenic L1M4|LINE|L1 259112 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 251-36 chr10 71424046 71424261 + 2 NA intron (NM_052836, intron 1 of 12) intron (NM_052836, intron 1 of 12) 27219 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 367-22 chr1 115995691 115995965 + 2 NA intron (NM_018420, intron 2 of 11) L1MD1|LINE|L1 -18552 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 207-156 chr2 209238754 209238945 + 2 NA Intergenic Intergenic -185198 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 345-300 chr2 222402059 222402318 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -21800 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 145-23 chr12 117007313 117007400 + 2 NA intron (NM_153348, intron 7 of 10) intron (NM_153348, intron 7 of 10) -20019 NR_103809 100506551 Hs.657861 NR_103809 ENSG00000257279 LOC100506551 - uncharacterized LOC100506551 ncRNA 214-74 chr12 6765318 6765504 + 2 NA promoter-TSS (NM_001330333) promoter-TSS (NM_001330333) -952 NM_001330333 5763 Hs.504613 NM_002824 ENSG00000159335 PTMS ParaT parathymosin protein-coding 222-365 chr8 68834076 68834204 + 2 NA Intergenic L1MEc|LINE|L1 270050 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 482-75 chr14 24454462 24454812 + 2 NA intron (NR_110032, intron 2 of 2) AluSz|SINE|Alu 11684 NR_110032 101927045 Hs.637772 NR_110032 LOC101927045 - uncharacterized LOC101927045 ncRNA 567-64 chr16 13687680 13688185 + 2 NA Intergenic MIRb|SINE|MIR -232225 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 336-74 chr10 91121736 91122034 + 2 NA Intergenic MamRep1151|LTR?|LTR? 31195 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 399-136 chr2 22526149 22526350 + 2 NA Intergenic Intergenic -10230 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 729-49 chr3 1200082 1200607 + 2 NA intron (NM_001289080, intron 2 of 22) intron (NM_001289080, intron 2 of 22) 107320 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 296-376 chr5 90999874 91000095 + 2 NA intron (NR_003149, intron 85 of 89) intron (NR_003149, intron 85 of 89) 314418 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 378-194 chr18 47726541 47726837 + 2 NA Intergenic Intergenic 203970 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 484-154 chr20 23537054 23537444 + 2 NA intron (NR_001279, intron 3 of 3) intron (NR_001279, intron 3 of 3) 18103 NR_001279 164380 Hs.400007 NR_001279 ENSG00000204663 CST13P CSTT|CTES6 cystatin 13, pseudogene pseudo 207-166 chr21 18530218 18530383 + 2 NA Intergenic Intergenic -126515 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 303-90 chr12 33154912 33155145 + 2 NA Intergenic MIRb|SINE|MIR -258182 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 179-13 chr12 14042262 14042388 + 2 NA Intergenic L1MB2|LINE|L1 -61969 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 355-409 chr5 114555269 114555502 + 2 NA intron (NR_130785, intron 3 of 12) THE1D-int|LTR|ERVL-MaLR -20656 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 237-94 chr13 107966353 107966533 + 2 NA Intergenic L1MB5|LINE|L1 -98947 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 361-428 chr8 13421810 13422166 + 2 NA intron (NM_024767, intron 2 of 4) intron (NM_024767, intron 2 of 4) 92863 NM_182643 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 365-182 chr2 37778671 37778954 + 2 NA Intergenic Intergenic 50899 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 154-76 chr3 145422481 145422574 + 2 NA Intergenic Intergenic 646658 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 273-271 chr21 31798867 31799036 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -66833 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 330-322 chr20 55064947 55065139 + 2 NA Intergenic L1PA10|LINE|L1 -358000 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 566-178 chr7 39715006 39715462 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -18334 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 325-464 chr5 150867237 150867417 + 2 NA intron (NM_001346557, intron 2 of 3) L1PB1|LINE|L1 20804 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 232-367 chr8 35518435 35518615 + 2 NA intron (NM_080872, intron 1 of 16) L1ME3Cz|LINE|L1 -25867 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 206-153 chr3 26742017 26742199 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 47551 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 332-224 chr19 27661706 27661875 + 2 NA Intergenic ALR/Alpha|Satellite|centr -131641 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 398-304 chr6 123691953 123692270 + 2 NA Intergenic Intergenic -55018 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 293-385 chr6 166130512 166130740 + 2 NA Intergenic L1ME2|LINE|L1 32906 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 246-183 chr2 14587805 14587943 + 2 NA Intergenic Intergenic -44843 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 310-511 chr8 51428841 51429145 + 2 NA intron (NM_144651, intron 12 of 22) L1MD|LINE|L1 380452 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 288-332 chr5 90342005 90342242 + 2 NA Intergenic Intergenic -52052 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 355-164 chr14 103760938 103761268 + 2 NA intron (NM_015316, intron 4 of 16) AluJb|SINE|Alu 45359 NM_001198953 79038 Hs.592322 NM_024071 ENSG00000100711 ZFYVE21 HCVP7TP1|ZF21 zinc finger FYVE-type containing 21 protein-coding 257-10 chr1 83636385 83636552 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 190414 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 352-205 chr19 29010480 29010789 + 2 NA intron (NR_040036, intron 3 of 4) intron (NR_040036, intron 3 of 4) 8079 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 218-295 chr6 169572532 169572745 + 2 NA intron (NM_182552, intron 24 of 25) intron (NM_182552, intron 24 of 25) 129391 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 252-171 chr19 276440 276632 + 2 NA Intergenic Intergenic 14603 NM_177543 8612 Hs.465506 NM_003712 ENSG00000141934 PLPP2 LPP2|PAP-2c|PAP2-g|PPAP2C phospholipid phosphatase 2 protein-coding 373-150 chr16 78872467 78872678 + 2 NA intron (NM_001291997, intron 7 of 7) MIRc|SINE|MIR 728165 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 414-26 chr10 63921776 63922142 + 2 NA Intergenic MIRb|SINE|MIR -400069 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 456-160 chr2 83640774 83641073 + 2 NA Intergenic L1MD2|LINE|L1 118109 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 313-370 chr3 194049714 194049988 + 2 NA intron (NR_136181, intron 3 of 3) L2c|LINE|L2 19678 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 361-449 chr8 88435525 88435754 + 2 NA Intergenic L1M2|LINE|L1 -108156 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 326-460 chr6 71020638 71020826 + 2 NA Intergenic L1MA6|LINE|L1 -63672 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 312-207 chr18 67127829 67128014 + 2 NA Intergenic Intergenic 46337 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 253-314 chr5 3022358 3022546 + 2 NA Intergenic Intergenic 104598 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 244-71 chr12 50488858 50489091 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -16011 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 769-11 chr12 18706618 18707291 + 2 NA intron (NM_001330769, intron 2 of 10) MLT1D|LTR|ERVL-MaLR 30555 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 259-103 chr13 109300518 109300744 + 2 NA Intergenic Intergenic -100065 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 401-236 chr4 101643033 101643422 + 2 NA Intergenic Intergenic -147380 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 454-65 chr11 129300410 129300840 + 2 NA Intergenic Intergenic -17461 NR_145484 399975 NM_207431 LOC399975 - uncharacterized LOC399975 ncRNA 282-326 chr4 31514089 31514353 + 2 NA intron (NR_149121, intron 1 of 2) MIR|SINE|MIR 7677 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 241-179 chr2 34690607 34690764 + 2 NA intron (NR_126404, intron 1 of 2) L1ME1|LINE|L1 13128 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 351-414 chr6 40385663 40385968 + 2 NA Intergenic Intergenic 7478 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 223-68 chr12 66058784 66058933 + 2 NA Intergenic MIR|SINE|MIR -27792 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 588-93 chr3 22433307 22433823 + 2 NA Intergenic Intergenic 476426 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 342-230 chr2 50549683 50549925 + 2 NA intron (NM_001330093, intron 9 of 22) intron (NM_001330093, intron 9 of 22) 146458 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 337-65 chr10 91909209 91909402 + 2 NA intron (NM_152429, intron 1 of 1) intron (NM_152429, intron 1 of 1) 181 NM_152429 143282 Hs.466120 NM_152429 ENSG00000174721 FGFBP3 C10orf13|FGF-BP3 fibroblast growth factor binding protein 3 protein-coding 364-198 chr2 19929189 19929425 + 2 NA intron (NM_001006657, intron 26 of 27) intron (NM_001006657, intron 26 of 27) -27324 NM_001008237 130502 Hs.591547 NM_001008237 ENSG00000183891 TTC32 - tetratricopeptide repeat domain 32 protein-coding 296-364 chr5 37798484 37798659 + 2 NA Intergenic L1MB5|LINE|L1 36251 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 329-409 chr4 61692486 61692748 + 2 NA intron (NM_001371342, intron 4 of 20) AluSz6|SINE|Alu 469148 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 639-4 chr1 115268907 115269435 + 2 NA Intergenic L2|LINE|L2 -13863 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 348-317 chr3 112874968 112875212 + 2 NA Intergenic L1MB5|LINE|L1 -29140 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 269-70 chr11 84669467 84669632 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 51393 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 298-256 chr20 40417729 40417914 + 2 NA Intergenic Intergenic 271415 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 349-177 chr15 53370466 53370758 + 2 NA Intergenic L1M5|LINE|L1 170240 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 511-207 chr5 86449253 86449738 + 2 NA Intergenic Intergenic 167051 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 206-114 chr2 55644471 55644599 + 2 NA intron (NM_033109, intron 23 of 27) intron (NM_033109, intron 23 of 27) -26913 NM_020463 57223 Hs.516182 NM_020463 ENSG00000275052 PPP4R3B FLFL2|PP4R3B|PSY2|SMEK2|smk1 protein phosphatase 4 regulatory subunit 3B protein-coding 334-106 chr12 18928138 18928402 + 2 NA Intergenic Intergenic 190151 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 254-386 chr7 84516702 84516938 + 2 NA Intergenic Intergenic -15656 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 589-15 chr11 2059084 2059602 + 2 NA Intergenic (ATTCTCC)n|Simple_repeat|Simple_repeat -57877 NR_131224 283120 Hs.533566 NR_002196 ENSG00000130600 H19 ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2 H19 imprinted maternally expressed transcript ncRNA 464-225 chr6 152962047 152962473 + 2 NA Intergenic L1MA7|LINE|L1 20781 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 549-172 chr5 118668861 118669263 + 2 NA Intergenic L1M3|LINE|L1 72874 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 279-418 chr8 104753445 104753658 + 2 NA Intergenic MIRb|SINE|MIR -164527 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 134-10 chr10 55932768 55932868 + 2 NA Intergenic L1M4|LINE|L1 -304876 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 335-37 chr1 239416442 239416762 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 30034 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 161-15 chr11 32800879 32801004 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -6283 NM_001008391 493860 Hs.706808 NM_001008391 ENSG00000186714 CCDC73 NY-SAR-79 coiled-coil domain containing 73 protein-coding 293-287 chr3 191263581 191263782 + 2 NA 3' UTR (NM_198184, exon 5 of 5) 3' UTR (NM_198184, exon 5 of 5) -29076 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 549-211 chr8 82066585 82066992 + 2 NA Intergenic Intergenic -224502 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 252-9 chr1 83722692 83722917 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 137742 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 347-425 chr5 179335469 179335777 + 2 NA intron (NM_014244, intron 2 of 21) intron (NM_014244, intron 2 of 21) 9838 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 284-261 chr3 54474649 54474819 + 2 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 165123 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 302-226 chr2 126012925 126013121 + 2 NA Intergenic L1M5|LINE|L1 104962 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 665-60 chr3 152122864 152123420 + 2 NA Intergenic Intergenic 82287 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 344-499 chr8 121638627 121638885 + 2 NA promoter-TSS (NR_002835) promoter-TSS (NR_002835) -590 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 577-200 chr9 26290230 26290641 + 2 NA Intergenic L1M4a2|LINE|L1 223760 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 549-184 chr6 110712340 110712713 + 2 NA intron (NM_001300963, intron 3 of 13) intron (NM_001300963, intron 3 of 13) -102095 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 260-34 chr1 245159500 245159709 + 2 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 4619 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 484-175 chr3 72618984 72619366 + 2 NA Intergenic Intergenic 45074 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 511-34 chr10 123608127 123608584 + 2 NA Intergenic L2|LINE|L2 -58000 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 212-176 chr2 178951959 178952162 + 2 NA intron (NM_001316745, intron 5 of 11) intron (NM_001316745, intron 5 of 11) 98077 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 771-85 chr8 126618853 126619473 + 2 NA Intergenic Intergenic -60685 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 222-60 chr11 30673498 30673649 + 2 NA Intergenic Intergenic -87220 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 496-258 chr7 31539206 31539579 + 2 NA intron (NM_001257968, intron 1 of 14) AluJb|SINE|Alu 9930 NM_001257968 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 471-273 chr8 131542487 131542862 + 2 NA Intergenic Intergenic -361419 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 145-63 chr4 86532309 86532445 + 2 NA Intergenic Intergenic 10175 NR_039657 100616463 NR_039657 ENSG00000266515 MIR4452 - microRNA 4452 ncRNA 451-136 chr22 43646909 43647183 + 2 NA intron (NM_198856, intron 15 of 29) L1MC1|LINE|L1 130792 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 261-329 chr6 19568205 19568429 + 2 NA Intergenic MIRc|SINE|MIR 118496 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 334-232 chr19 27351156 27351472 + 2 NA Intergenic ALR/Alpha|Satellite|centr -442117 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 193-162 chr5 15977736 15977922 + 2 NA Intergenic Intergenic 42647 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 203-202 chr6 76987050 76987224 + 2 NA Intergenic Intergenic -393514 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 880-19 chr2 38155740 38156457 + 2 NA intron (NR_027252, intron 2 of 2) MLT1C|LTR|ERVL-MaLR 24993 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 338-536 chr8 63483768 63484011 + 2 NA Intergenic L1P4a|LINE|L1 18040 NR_125825 102724612 Hs.97639 NR_125825 ENSG00000253894 LOC102724612 - uncharacterized LOC102724612 ncRNA 328-520 chr6 164746870 164747145 + 2 NA Intergenic Intergenic 75056 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 519-122 chr2 173647159 173647516 + 2 NA Intergenic Intergenic 292465 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 198-249 chr8 119150441 119150632 + 2 NA Intergenic L2|LINE|L2 -57827 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 297-32 chr1 219708382 219708609 + 2 NA Intergenic Intergenic -95350 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 169-14 chr11 13442125 13442246 + 2 NA intron (NM_001297741, intron 1 of 7) intron (NM_001297741, intron 1 of 7) -1906 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 200-225 chr5 117039277 117039429 + 2 NA Intergenic MER57B1|LTR|ERV1 -277144 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 248-287 chr4 100825603 100825787 + 2 NA Intergenic Intergenic -150582 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 241-215 chr20 14937960 14938165 + 2 NA intron (NM_001351663, intron 5 of 17) L1MA4|LINE|L1 -8544 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 128-68 chr7 38587463 38587554 + 2 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 43865 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 324-408 chr4 160951708 160952021 + 2 NA Intergenic Intergenic -1070869 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 254-121 chr14 75618323 75618536 + 2 NA intron (NM_001195283, intron 1 of 9) intron (NM_001195283, intron 1 of 9) 12889 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 234-127 chr16 87063399 87063581 + 2 NA non-coding (NR_126008, exon 3 of 3) non-coding (NR_126008, exon 3 of 3) 5706 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 253-324 chr5 33144332 33144522 + 2 NA Intergenic L1M4b|LINE|L1 -85308 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 425-90 chr14 81392888 81393233 + 2 NA intron (NM_001366850, intron 4 of 7) intron (NM_001366850, intron 4 of 7) 34715 NM_001256430 85439 Hs.14248 NM_033104 ENSG00000140022 STON2 STN2|STNB|STNB2 stonin 2 protein-coding 360-454 chr8 66724550 66724905 + 2 NA intron (NM_001033578, intron 1 of 16) L1ME4b|LINE|L1 11946 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 415-85 chr16 4160003 4160397 + 2 NA Intergenic AluSc|SINE|Alu -43758 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 132-76 chr6 147051306 147051416 + 2 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -107564 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 242-2 chr1 27273849 27274020 + 2 NA intron (NM_001276252, intron 3 of 15) L1MC4|LINE|L1 39302 NM_001276252 23038 Hs.469154 NM_015023 ENSG00000142784 WDTC1 ADP|DCAF9 WD and tetratricopeptide repeats 1 protein-coding 237-178 chr2 69589264 69589450 + 2 NA intron (NM_014911, intron 2 of 21) intron (NM_014911, intron 2 of 21) 54382 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 310-443 chr6 40199820 40200010 + 2 NA Intergenic L1MA9|LINE|L1 156091 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 257-198 chr2 84175765 84175997 + 2 NA Intergenic MIR|SINE|MIR -114801 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 443-274 chr7 17558185 17558575 + 2 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 529 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 408-341 chr8 118517399 118517704 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -103450 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 348-212 chr19 50179255 50179443 + 2 NA Intergenic Intergenic -16068 NM_152358 126123 Hs.414175 NM_152358 ENSG00000161652 IZUMO2 C19orf41|PLAL6978|PRO21961|SCRL IZUMO family member 2 protein-coding 240-398 chr7 52864036 52864207 + 2 NA Intergenic L1MB4|LINE|L1 -171512 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 457-188 chr4 155251713 155252124 + 2 NA Intergenic Intergenic 43282 NM_000910 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 373-180 chr19 57983932 57984219 + 2 NA intron (NM_001348025, intron 6 of 6) intron (NM_001348025, intron 6 of 6) -9541 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 161-74 chr4 31182347 31182447 + 2 NA intron (NR_125935, intron 2 of 4) intron (NR_125935, intron 2 of 4) 11253 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 200-6 chr1 74147556 74147708 + 2 NA intron (NM_001105659, intron 4 of 7) intron (NM_001105659, intron 4 of 7) 50544 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 367-298 chr3 128681854 128682141 + 2 NA Intergenic Intergenic -31179 NM_002950 6184 Hs.518244 NM_002950 ENSG00000163902 RPN1 OST1|RBPH1 ribophorin I protein-coding 504 chr1 34039994 34040401 + 2 NA intron (NM_052896, intron 2 of 69) AluJb|SINE|Alu 125077 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 213-182 chr3 117517632 117517821 + 2 NA Intergenic L2a|LINE|L2 173199 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 185-115 chr2 204342939 204343115 + 2 NA Intergenic L1MC3|LINE|L1 -202448 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 645-56 chr2 101855142 101855660 + 2 NA intron (NM_145686, intron 12 of 30) MIRb|SINE|MIR -128064 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 352-233 chr2 54017029 54017230 + 2 NA intron (NM_001320587, intron 2 of 5) MLT1A1|LTR|ERVL-MaLR 46016 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 750-39 chr2 194439160 194439769 + 2 NA Intergenic (ATGA)n|Simple_repeat|Simple_repeat 95195 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 590-140 chr5 159678496 159678870 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 192701 NR_109891 101927766 Hs.638568 NR_109891 ENSG00000253311 LINC01847 - long intergenic non-protein coding RNA 1847 ncRNA 349-37 chr1 217843991 217844247 + 2 NA intron (NM_138796, intron 9 of 10) LTR40b|LTR|ERVL -48781 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 300-24 chr1 194073860 194074040 + 2 NA Intergenic Intergenic 769205 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 338-201 chr16 65326932 65327114 + 2 NA intron (NR_027755, intron 7 of 8) MIRb|SINE|MIR -150450 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 237-93 chr13 86910985 86911154 + 2 NA promoter-TSS (NR_132371) promoter-TSS (NR_132371) -851 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 277-256 chr3 78074334 78074546 + 2 NA Intergenic Intergenic -25477 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 250-110 chr13 85822353 85822532 + 2 NA Intergenic Intergenic -23023 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 292-170 chr17 41949470 41949653 + 2 NA intron (NM_001350319, intron 9 of 10) intron (NM_001350319, intron 9 of 10) -17234 NM_033133 1267 Hs.273621 NM_033133 ENSG00000173786 CNP CNP1 2',3'-cyclic nucleotide 3' phosphodiesterase protein-coding 370-402 chr6 123841803 123842101 + 2 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 38087 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 279-37 chr10 49087996 49088258 + 2 NA intron (NM_001031746, intron 2 of 7) intron (NM_001031746, intron 2 of 7) 27395 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 730-55 chr4 128662073 128662526 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -147401 NM_199320 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 285-448 chr9 24912401 24912581 + 2 NA Intergenic Intergenic -366594 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 403-268 chr6 50371854 50372141 + 2 NA Intergenic L1MB8|LINE|L1 -322068 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 435-8 chr1 59193680 59193993 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -47029 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 394-240 chr4 68298615 68298931 + 2 NA Intergenic L1MB8|LINE|L1 51317 NM_001330698 91746 Hs.175955 NM_133370 ENSG00000083896 YTHDC1 YT521|YT521-B YTH domain containing 1 protein-coding 303-325 chr4 93400203 93400412 + 2 NA intron (NM_001286838, intron 8 of 14) intron (NM_001286838, intron 8 of 14) -428446 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 358-124 chr14 79142672 79142864 + 2 NA intron (NR_073547, intron 14 of 20) L2c|LINE|L2 -57214 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 465-45 chr11 26598369 26598754 + 2 NA intron (NM_031418, intron 15 of 26) intron (NM_031418, intron 15 of 26) -26298 NM_001135091 143662 Hs.407152 NM_145650 ENSG00000169550 MUC15 MUC-15|PAS3|PASIII mucin 15, cell surface associated protein-coding 536-10 chr1 106093370 106093762 + 2 NA Intergenic Intergenic -65313 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 367-69 chr11 14917996 14918195 + 2 NA Intergenic AluJo|SINE|Alu -25890 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 185-200 chr8 81035291 81035422 + 2 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 76712 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 492-155 chr20 48442563 48442905 + 2 NA Intergenic MER20|DNA|hAT-Charlie 82823 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 358-496 chr8 129604333 129604549 + 2 NA intron (NR_130917, intron 1 of 3) THE1C-int|LTR|ERVL-MaLR -29423 NR_130920 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 319-50 chr10 31946113 31946357 + 2 NA Intergenic Intergenic -17359 NM_001270697 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 274-332 chr6 47999913 48000180 + 2 NA intron (NM_207499, intron 2 of 2) intron (NM_207499, intron 2 of 2) 68643 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 272-267 chr3 62262256 62262483 + 2 NA non-coding (NR_038281, exon 5 of 5) non-coding (NR_038281, exon 5 of 5) 56578 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 261-298 chr5 4972215 4972418 + 2 NA Intergenic Intergenic -62043 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 331-398 chr4 142619057 142619277 + 2 NA intron (NM_003866, intron 2 of 26) L1MB1|LINE|L1 227368 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 376-35 chr10 6909327 6909523 + 2 NA Intergenic MER39|LTR|ERV1 129827 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 146-11 chr10 20317062 20317159 + 2 NA Intergenic Intergenic -234860 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 427-286 chrX 50710033 50710357 + 2 NA intron (NR_027121, intron 1 of 9) L1PA16|LINE|L1 103849 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 227-315 chr6 102906417 102906639 + 2 NA Intergenic L2a|LINE|L2 1507543 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 671-91 chr7 78222747 78223179 + 2 NA intron (NM_001301128, intron 10 of 20) intron (NM_001301128, intron 10 of 20) -124279 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 393-64 chr11 116071618 116071845 + 2 NA Intergenic L2c|LINE|L2 -311531 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 646-16 chr10 37300128 37300717 + 2 NA Intergenic Intergenic -8764 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 189-62 chr15 101373690 101373872 + 2 NA intron (NM_001291309, intron 9 of 19) intron (NM_001291309, intron 9 of 19) 39344 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 438-279 chr8 108735138 108735491 + 2 NA intron (NR_136411, intron 1 of 3) L1MB8|LINE|L1 52280 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 383-299 chr4 168204302 168204615 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 111921 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 337-470 chr5 162621357 162621599 + 2 NA Intergenic Intergenic 553836 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 587-49 chr14 87624494 87624980 + 2 NA Intergenic L3|LINE|CR1 30557 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 265-389 chr8 82738947 82739096 + 2 NA Intergenic Intergenic -173083 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 345-8 chr1 44254523 44254717 + 2 NA intron (NM_001301698, intron 6 of 7) L2c|LINE|L2 -2061 NR_132966 106635545 NR_132966 SNORA110 - small nucleolar RNA, H/ACA box 110 snoRNA 299-100 chr12 37920919 37921076 + 2 NA Intergenic ALR/Alpha|Satellite|centr -395777 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 382-422 chr8 126337171 126337365 + 2 NA Intergenic L1PB2|LINE|L1 11773 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 525-126 chr2 115637727 115638106 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 294101 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 339-146 chr14 28533272 28533518 + 2 NA Intergenic L1PA16|LINE|L1 231924 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 327-152 chr14 63456210 63456418 + 2 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 51924 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 231-50 chr11 13017008 13017185 + 2 NA Intergenic L1ME3G|LINE|L1 7780 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 968-9 chr2 48968688 48969331 + 2 NA intron (NM_000145, intron 8 of 9) intron (NM_000145, intron 8 of 9) -90594 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 279-144 chr18 11337522 11337778 + 2 NA Intergenic Intergenic -116828 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 287-27 chr1 180391637 180391888 + 2 NA intron (NM_032360, intron 6 of 7) L1ME2|LINE|L1 46628 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 284-182 chr19 36398639 36398797 + 2 NA intron (NM_001321917, intron 4 of 4) AluJo|SINE|Alu -19517 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 335-386 chr4 69089240 69089407 + 2 NA intron (NM_001349568, intron 1 of 6) intron (NM_001349568, intron 1 of 6) -7151 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 319-79 chr10 111934586 111934789 + 2 NA Intergenic Intergenic 249078 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 323-465 chr6 78476715 78476918 + 2 NA Intergenic Intergenic 62493 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 604-161 chr8 83942034 83942527 + 2 NA Intergenic L1MB8|LINE|L1 -240507 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 366-357 chr5 153473606 153473824 + 2 NA Intergenic L1PA10|LINE|L1 -16809 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 439-131 chr2 64696157 64696493 + 2 NA Intergenic L1MEf|LINE|L1 -42412 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 821-19 chr16 78392690 78393442 + 2 NA intron (NM_001291997, intron 5 of 7) intron (NM_001291997, intron 5 of 7) 293412 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 375-239 chr20 37622909 37623231 + 2 NA promoter-TSS (NR_047461) promoter-TSS (NR_047461) 49 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 234-41 chr10 74512989 74513140 + 2 NA intron (NR_120673, intron 2 of 4) L1MA5A|LINE|L1 16260 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 312-59 chr10 107624290 107624496 + 2 NA Intergenic L1MA4|LINE|L1 444900 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 356-367 chr4 98286961 98287293 + 2 NA intron (NM_001100427, intron 1 of 14) intron (NM_001100427, intron 1 of 14) 25743 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 211-327 chr9 103321812 103321988 + 2 NA intron (NR_121578, intron 1 of 9) intron (NR_121578, intron 1 of 9) 3133 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 238 chr1 13941878 13942082 + 2 NA Intergenic L1MEg|LINE|L1 192565 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 265-346 chr6 150480104 150480320 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 111200 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 326-239 chr2 42135977 42136190 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -33270 NM_001145076 27436 Hs.713173 NM_019063 ENSG00000143924 EML4 C2orf2|ELP120|EMAP-4|EMAPL4|ROPP120 EMAP like 4 protein-coding 386-376 chr9 36782846 36783223 + 2 NA Intergenic Intergenic 40565 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 239-128 chr17 33205403 33205592 + 2 NA intron (NM_001094, intron 1 of 9) MER103C|DNA|hAT-Charlie 87491 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 200-158 chr20 55061803 55061958 + 2 NA Intergenic L1PA10|LINE|L1 -361163 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 475-71 chr13 76727537 76727975 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR 158649 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 455-161 chr3 34332948 34333302 + 2 NA Intergenic L1MA8|LINE|L1 534495 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 782-58 chr6 46362082 46362516 + 2 NA non-coding (NR_125838, exon 4 of 4) non-coding (NR_125838, exon 4 of 4) -36407 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 348-242 chr2 173888087 173888323 + 2 NA Intergenic Intergenic 75675 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 255-153 chr16 87605583 87605744 + 2 NA intron (NM_020655, intron 1 of 4) intron (NM_020655, intron 1 of 4) 3155 NM_001271604 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 445-151 chr20 12828507 12828928 + 2 NA Intergenic Intergenic 108246 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 161-39 chr18 22739293 22739390 + 2 NA intron (NR_110782, intron 1 of 1) intron (NR_110782, intron 1 of 1) 47496 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 218-191 chr20 55227563 55227734 + 2 NA Intergenic L1M4a1|LINE|L1 -195395 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 256-317 chr5 41388946 41389174 + 2 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 121541 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 670-115 chr7 110667058 110667683 + 2 NA intron (NM_001350963, intron 5 of 5) MLT1D|LTR|ERVL-MaLR -423636 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 257-400 chr8 24825776 24825984 + 2 NA Intergenic Intergenic -87881 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 335-113 chr12 1917640 1917875 + 2 NA intron (NM_172364, intron 1 of 37).2 intron (NM_172364, intron 1 of 37).2 895 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 627-89 chr5 44713954 44714427 + 2 NA Intergenic Intergenic 94603 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 276-236 chr2 105029269 105029496 + 2 NA intron (NR_110603, intron 1 of 2) L1PA16|LINE|L1 -8687 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 303-189 chr19 52870537 52870702 + 2 NA intron (NM_001351777, intron 5 of 5) intron (NM_001351777, intron 5 of 5) -13000 NR_102300 90333 Hs.467223 NM_199132 ENSG00000204604 ZNF468 - zinc finger protein 468 protein-coding 197-185 chr6 115607814 115607959 + 2 NA Intergenic Intergenic 35949 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 342-22 chr1 104468582 104468798 + 2 NA Intergenic MIRb|SINE|MIR 395667 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 476-35 chr10 105938726 105939105 + 2 NA Intergenic L1MA8|LINE|L1 -118582 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 157-80 chr3 15692743 15692885 + 2 NA intron (NM_001349280, intron 16 of 26) L1MB2|LINE|L1 4557 NR_036085 100422990 NR_036085 ENSG00000264354 MIR3134 - microRNA 3134 ncRNA 147-35 chr18 41106165 41106282 + 2 NA Intergenic L1M4|LINE|L1 414454 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 130-4 chr1 165459141 165459260 + 2 NA Intergenic L1MA9|LINE|L1 -13845 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 208-82 chr16 31558187 31558348 + 2 NA Intergenic HERVL40-int|LTR|ERVL -4700 NR_146571 105371173 NR_146571 LINC02190 - long intergenic non-protein coding RNA 2190 ncRNA 231-73 chr12 90282760 90282918 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -10479 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 436-200 chr4 31945461 31945819 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -51739 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 367-331 chr4 114981879 114982159 + 2 NA intron (NM_022569, intron 2 of 13) MSTA|LTR|ERVL-MaLR 131601 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 500-54 chr11 79258150 79258479 + 2 NA intron (NM_001098816, intron 2 of 33) MIRb|SINE|MIR 143795 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 410-340 chrX 74677040 74677378 + 2 NA Intergenic Intergenic -62585 NM_016120 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 311-169 chr15 100286624 100286875 + 2 NA intron (NM_139057, intron 3 of 21) L1PA15|LINE|L1 55226 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 786-45 chr4 66122362 66122928 + 2 NA Intergenic Intergenic -154179 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 231-109 chr15 89035900 89036066 + 2 NA Intergenic AluJr|SINE|Alu -52473 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 301-5 chr1 75609115 75609370 + 2 NA intron (NM_152697, intron 1 of 23) intron (NM_152697, intron 1 of 23) 1872 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 416-274 chr5 67793475 67793820 + 2 NA intron (NR_130779, intron 1 of 2) intron (NR_130779, intron 1 of 2) 434 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 341-231 chr2 21592898 21593125 + 2 NA Intergenic Intergenic 117641 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 448-31 chr10 43893281 43893554 + 2 NA intron (NR_038268, intron 4 of 4) intron (NR_038268, intron 4 of 4) -15879 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 307-125 chr14 19959077 19959347 + 2 NA Intergenic Intergenic -16307 NM_001005486 81127 Hs.554583 NM_001005486 ENSG00000169488 OR4K15 OR14-20|OR4K15Q olfactory receptor family 4 subfamily K member 15 protein-coding 215-208 chr3 157998479 157998655 + 2 NA Intergenic Intergenic 107596 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 534-268 chr8 132704330 132704755 + 2 NA Intergenic MIRb|SINE|MIR -28997 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 389-319 chr6 68418256 68418598 + 2 NA Intergenic Intergenic -88528 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 589-142 chr6 143036436 143036828 + 2 NA intron (NR_038987, intron 1 of 2) intron (NR_038987, intron 1 of 2) 950 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 293-423 chr8 21273678 21273840 + 2 NA Intergenic Intergenic -24480 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 319-197 chr18 4661411 4661646 + 2 NA Intergenic L1MB7|LINE|L1 -206221 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 320-357 chr3 110592910 110593083 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 476963 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 519-23 chr10 37912005 37912371 + 2 NA Intergenic L1MA9|LINE|L1 -54085 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 659-25 chr12 47505537 47506112 + 2 NA Intergenic LTR47B2|LTR|ERVL 90816 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 391-384 chrX 39463754 39464046 + 2 NA Intergenic Intergenic -72126 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 512-50 chr11 59025200 59025600 + 2 NA intron (NR_033853, intron 3 of 5) MLT1B|LTR|ERVL-MaLR 33052 NR_033853 283194 NR_033853 ENSG00000255240 LOC283194 - uncharacterized LOC283194 ncRNA 289-187 chr18 32615829 32616046 + 2 NA Intergenic MER77|LTR|ERVL 104274 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 295-438 chr7 54176969 54177160 + 2 NA Intergenic L1MEd|LINE|L1 -153633 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 316-442 chr5 74986588 74986783 + 2 NA Intergenic MER67B|LTR|ERV1 65873 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 244-325 chr6 89973930 89974150 + 2 NA intron (NM_021813, intron 6 of 8) intron (NM_021813, intron 6 of 8) 79571 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 669-106 chr7 84340896 84341339 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac -146328 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 245-315 chr6 170122015 170122235 + 2 NA Intergenic L1MEf|LINE|L1 -38517 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 375-447 chr9 74066507 74066792 + 2 NA Intergenic Intergenic -304882 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 887-20 chr22 39638864 39639521 + 2 NA intron (NM_001003406, intron 5 of 35) MER58A|DNA|hAT-Charlie 68439 NM_021096 8911 Hs.125116 NM_021096 ENSG00000100346 CACNA1I Cav3.3|ca(v)3.3 calcium voltage-gated channel subunit alpha1 I protein-coding 278-300 chr4 31127917 31128120 + 2 NA intron (NM_001173523, intron 2 of 2) (TA)n|Simple_repeat|Simple_repeat -43126 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 379-143 chr2 4192814 4193165 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 218828 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 345-2 chr1 2948053 2948333 + 2 NA Intergenic Intergenic -73274 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 134-59 chr4 49048013 49048108 + 2 NA intron (NM_001286791, intron 14 of 15) intron (NM_001286791, intron 14 of 15) 61418 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 310-284 chr20 159539 159715 + 2 NA TTS (NM_139074) TTS (NM_139074) 2173 NM_139074 140850 Hs.99362 NM_139074 ENSG00000088782 DEFB127 C20orf73|DEF-27|DEFB-27|DEFB27|bA530N10.2|hBD-27 defensin beta 127 protein-coding 407-11 chr1 165153703 165153997 + 2 NA Intergenic Intergenic 202391 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 419-250 chr6 46872804 46873095 + 2 NA intron (NM_001098518, intron 10 of 20) intron (NM_001098518, intron 10 of 20) -30522 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 367-148 chr16 31577270 31577555 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -7888 NR_027011 440359 Hs.650902 NR_027011 YBX3P1 CSDAP1 Y-box binding protein 3 pseudogene 1 pseudo 181-27 chr11 75190660 75190827 + 2 NA intron (NM_007256, intron 8 of 13) intron (NM_007256, intron 8 of 13) 30911 NM_001145211 11309 Hs.7884 NM_007256 ENSG00000137491 SLCO2B1 OATP-B|OATP2B1|OATPB|SLC21A9 solute carrier organic anion transporter family member 2B1 protein-coding 380-52 chr10 91453539 91453835 + 2 NA intron (NM_182765, intron 2 of 20) L1MD1|LINE|L1 43402 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 223-148 chr2 49427911 49428046 + 2 NA Intergenic Intergenic -273451 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 728-96 chr7 130515013 130515509 + 2 NA intron (NM_012133, intron 20 of 23) MSTA|LTR|ERVL-MaLR 19150 NR_029899 442904 NR_029899 ENSG00000199043 MIR335 MIRN335|hsa-mir-335|miRNA335|mir-335 microRNA 335 ncRNA 293-271 chr3 105968121 105968367 + 2 NA Intergenic Intergenic -98843 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 249-393 chr7 112722509 112722735 + 2 NA Intergenic Intergenic 67771 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 219-100 chr14 60781229 60781364 + 2 NA intron (NM_001177963, intron 1 of 6) intron (NM_001177963, intron 1 of 6) 46535 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 359-34 chr1 189266844 189267065 + 2 NA Intergenic MER52-int|LTR|ERV1 1209056 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 425-54 chr11 37233666 37233893 + 2 NA Intergenic LTR8A|LTR|ERV1 -635500 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 351-441 chr7 35393685 35394029 + 2 NA Intergenic Plat_L3|LINE|CR1 80002 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 367-330 chr4 104529566 104529835 + 2 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -34806 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 343-253 chr2 104767161 104767489 + 2 NA Intergenic Intergenic -9606 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 250-384 chr6 156533563 156533789 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 154926 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 544-38 chr10 110017984 110018519 + 2 NA intron (NM_001121, intron 1 of 13) AluSx1|SINE|Alu -9870 NR_038943 100505933 Hs.604103 NR_038943 ADD3-AS1 - ADD3 antisense RNA 1 ncRNA 410-27 chr10 16234205 16234490 + 2 NA Intergenic Intergenic -202596 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 389-81 chr12 61023865 61024106 + 2 NA Intergenic LTR12D|LTR|ERV1 1168854 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 332-37 chr1 208751201 208751437 + 2 NA Intergenic Intergenic 22631 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 397-314 chr7 119465092 119465431 + 2 NA Intergenic Intergenic 442114 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 314-496 chr6 39323167 39323391 + 2 NA promoter-TSS (NM_001135106) promoter-TSS (NM_001135106) -311 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 256-286 chr4 37267723 37267928 + 2 NA intron (NM_001144990, intron 1 of 6) L2c|LINE|L2 23082 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 312-28 chr1 218973335 218973538 + 2 NA intron (NR_031644, intron 6 of 6) THE1D-int|LTR|ERVL-MaLR -54925 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 311-248 chr2 50217547 50217821 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 130070 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 348-468 chr6 123297127 123297338 + 2 NA intron (NM_006073, intron 24 of 40) intron (NM_006073, intron 24 of 40) -142372 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 346-337 chr3 191929700 191929881 + 2 NA Intergenic L1PA16|LINE|L1 -308840 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 270-250 chr3 155922916 155923128 + 2 NA intron (NM_003875, intron 11 of 15) L1MEd|LINE|L1 52372 NM_003875 8833 Hs.591314 NM_003875 ENSG00000163655 GMPS GATD7 guanine monophosphate synthase protein-coding 340-112 chr12 69596675 69596869 + 2 NA intron (NM_006431, intron 10 of 15) intron (NM_006431, intron 10 of 15) 10883 NM_001198842 10576 Hs.189772 NM_006431 ENSG00000166226 CCT2 99D8.1|CCT-beta|CCTB|HEL-S-100n|PRO1633|TCP-1-beta chaperonin containing TCP1 subunit 2 protein-coding 364-406 chr7 21553653 21553955 + 2 NA intron (NM_001277115, intron 2 of 81) HERVP71A-int|LTR|ERV1 10765 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 527-93 chr14 81292764 81293140 + 2 NA intron (NM_001366850, intron 5 of 7) intron (NM_001366850, intron 5 of 7) -71562 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 290-450 chr8 87681954 87682223 + 2 NA Intergenic Intergenic 191927 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 116-44 chr7 30124581 30124650 + 2 NA intron (NM_001350973, intron 13 of 13) LTR37-int|LTR|ERV1 -10371 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 518-4 chr1 95169922 95170311 + 2 NA intron (NR_125949, intron 3 of 3) intron (NR_125949, intron 3 of 3) 52193 NM_001199691 100527978 Hs.483512 NM_001199691 ENSG00000271092 TLCD4-RWDD3 TMEM56-RWDD3 TLCD4-RWDD3 readthrough protein-coding 307-63 chr10 71417885 71418095 + 2 NA intron (NM_052836, intron 1 of 12) L1MEg|LINE|L1 21056 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 482-231 chr6 141153154 141153527 + 2 NA Intergenic LTR48|LTR|ERV1 469526 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 300-452 chr8 52855735 52855924 + 2 NA Intergenic LTR40b|LTR|ERVL -84079 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 248-328 chr5 124144773 124144958 + 2 NA intron (NR_125774, intron 4 of 5) L1MD1|LINE|L1 293655 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 186-118 chr4 61008681 61008851 + 2 NA Intergenic Intergenic 86147 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 473-158 chr20 55679583 55679990 + 2 NA Intergenic Intergenic -252589 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 693-67 chr22 27581797 27582258 + 2 NA Intergenic Intergenic 219729 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 318-487 chr6 132077553 132077734 + 2 NA Intergenic Intergenic 37620 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 239-259 chr3 147273610 147273777 + 2 NA Intergenic L1MA1|LINE|L1 118737 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 773-22 chr21 24969199 24969689 + 2 NA intron (NR_046198, intron 2 of 3) MER110|LTR|ERV1 128894 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 662-81 chr6 1241284 1241726 + 2 NA Intergenic X6A_LINE|LINE|CR1 -70593 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 422-282 chr7 49730980 49731346 + 2 NA Intergenic Intergenic -42475 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 252-31 chr10 17289949 17290131 + 2 NA Intergenic Intergenic -60055 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 428-284 chr8 24416026 24416386 + 2 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) -24820 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 334-474 chr6 137535642 137535924 + 2 NA Intergenic Intergenic -41389 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 155-27 chr11 15224684 15224832 + 2 NA intron (NM_001042536, intron 8 of 12) intron (NM_001042536, intron 8 of 12) 75656 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 347-238 chr2 121145154 121145405 + 2 NA Intergenic AluSx1|SINE|Alu 139923 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 197-27 chr10 43969230 43969397 + 2 NA intron (NR_033846, intron 7 of 7) intron (NR_033846, intron 7 of 7) 56911 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 260-382 chr6 81719755 81720007 + 2 NA Intergenic Intergenic 32800 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 234-168 chr2 62557839 62558000 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -51724 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 529-246 chrX 142215120 142215616 + 2 NA Intergenic L1MA3|LINE|L1 -10078 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 157-126 chr7 137062506 137062637 + 2 NA intron (NR_046103, intron 1 of 3) L1PA13|LINE|L1 101770 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 248-301 chr5 25720275 25720429 + 2 NA Intergenic L1MD1|LINE|L1 529399 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 334-203 chr17 11317070 11317343 + 2 NA intron (NM_001173461, intron 2 of 3) L1MEf|LINE|L1 75783 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 273-338 chr4 134967803 134967993 + 2 NA Intergenic L1M1|LINE|L1 155661 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 623-98 chr4 163643912 163644409 + 2 NA intron (NM_001166373, intron 4 of 7) intron (NM_001166373, intron 4 of 7) -30626 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 334-143 chr14 52145362 52145614 + 2 NA Intergenic L1PA15|LINE|L1 -76429 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 246-62 chr11 21036846 21037085 + 2 NA intron (NM_201551, intron 12 of 18) L1ME4a|LINE|L1 367379 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 154-35 chr15 58022776 58022868 + 2 NA intron (NM_170696, intron 1 of 11) L1MA4A|LINE|L1 -8799 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 447-100 chr18 7741654 7742012 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 174517 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 283-154 chr16 7949393 7949609 + 2 NA Intergenic Intergenic 616656 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 430-125 chr18 57213453 57213826 + 2 NA Intergenic Intergenic -42445 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 410-326 chr9 8189715 8190083 + 2 NA Intergenic L1PA16|LINE|L1 -390121 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 462-17 chr1 225163757 225164016 + 2 NA intron (NM_001367479, intron 35 of 85) L1MA2|LINE|L1 234211 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 280-145 chr16 12128642 12128894 + 2 NA intron (NM_032167, intron 12 of 20) intron (NM_032167, intron 12 of 20) 152034 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 248-94 chr12 126835076 126835249 + 2 NA Intergenic L1PA16|LINE|L1 39528 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 143-44 chr2 120105240 120105317 + 2 NA non-coding (NR_138472, exon 18 of 18) non-coding (NR_138472, exon 18 of 18) 92201 NM_001184937 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 319-441 chr6 5437465 5437670 + 2 NA intron (NM_006567, intron 4 of 6) L1MEf|LINE|L1 20508 NR_125848 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 363-287 chr3 84398387 84398604 + 2 NA Intergenic Intergenic 471080 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 114-11 chr12 106443241 106443344 + 2 NA intron (NM_001160708, intron 18 of 27) Charlie5|DNA|hAT-Charlie 85210 NM_001160708 55703 Hs.62696 NM_018082 ENSG00000013503 POLR3B C128|HLD8|INMAP|RPC2 RNA polymerase III subunit B protein-coding 209-45 chr10 92179035 92179213 + 2 NA intron (NM_001178137, intron 4 of 9) intron (NM_001178137, intron 4 of 9) 64155 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 262-273 chr3 34984998 34985251 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 408899 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 395-137 chr17 61202764 61203052 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 164796 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 316-432 chr5 27159301 27159492 + 2 NA Intergenic L1M1|LINE|L1 -120810 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 347-132 chr14 60034538 60034801 + 2 NA intron (NR_075071, intron 29 of 32) L1MA4|LINE|L1 -57242 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 217-8 chr1 58302937 58303107 + 2 NA Intergenic LTR33A_|LTR|ERVL -52475 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 510-255 chr7 13642820 13643167 + 2 NA Intergenic Intergenic 343521 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 580-133 chr4 33309739 33310268 + 2 NA Intergenic AluSp|SINE|Alu 729890 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 307-209 chr19 12012551 12012752 + 2 NA intron (NR_134928, intron 2 of 3) AluSq|SINE|Alu 23090 NM_001308346 163059 Hs.667776 NM_152602 ENSG00000197647 ZNF433 - zinc finger protein 433 protein-coding 235-248 chr4 41295263 41295436 + 2 NA Intergenic Intergenic 38421 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 212-99 chr14 60021266 60021426 + 2 NA intron (NR_075071, intron 26 of 32) L1MB8|LINE|L1 -70565 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 344-353 chr4 47153692 47154026 + 2 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 122292 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 278-411 chr8 56775632 56775784 + 2 NA Intergenic Intergenic -215885 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 218-243 chr4 67728171 67728354 + 2 NA Intergenic (TATAATT)n|Simple_repeat|Simple_repeat 26984 NR_015439 550112 Hs.479879 NR_015439 ENSG00000248049 UBA6-AS1 - UBA6 antisense RNA 1 (head to head) ncRNA 292-465 chr9 79381910 79382108 + 2 NA Intergenic Intergenic -189764 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 192-25 chr10 67243546 67243721 + 2 NA intron (NM_001127384, intron 5 of 17) L2c|LINE|L2 159777 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 434-259 chr7 42665835 42666170 + 2 NA intron (NR_110833, intron 2 of 2) intron (NR_110833, intron 2 of 2) 40445 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 375-206 chr2 48478577 48478934 + 2 NA intron (NR_024188, intron 12 of 21) L1MB8|LINE|L1 37986 NM_001193475 129285 Hs.654619 NM_152994 ENSG00000162869 PPP1R21 CCDC128|KLRAQ1 protein phosphatase 1 regulatory subunit 21 protein-coding 415-86 chr16 9496824 9497100 + 2 NA Intergenic Intergenic -41457 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 353-154 chr15 26954400 26954577 + 2 NA Intergenic L1MC4a|LINE|L1 -16693 NM_001270873 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 159-63 chr4 34167531 34167668 + 2 NA intron (NR_147184, intron 2 of 3) L1ME2|LINE|L1 102148 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 473-106 chr17 26825112 26825423 + 2 NA Intergenic Intergenic 263974 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 344-158 chr15 80074879 80075122 + 2 NA intron (NM_001242915, intron 1 of 5) intron (NM_001242915, intron 1 of 5) 2439 NM_001242915 54469 Hs.596679 NM_019006 ENSG00000086666 ZFAND6 AWP1|ZA20D3|ZFAND5B zinc finger AN1-type containing 6 protein-coding 566-129 chr3 111579558 111580087 + 2 NA intron (NM_001318889, intron 4 of 7) MSTC|LTR|ERVL-MaLR 15524 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 234-174 chr2 80553346 80553563 + 2 NA intron (NM_001282599, intron 5 of 11) intron (NM_001282599, intron 5 of 11) 240075 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 145-20 chr12 25604141 25604281 + 2 NA intron (NM_001352232, intron 1 of 10) L3|LINE|CR1 44367 NM_001145727 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 568-60 chr15 36252931 36253410 + 2 NA Intergenic Intergenic 326314 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 492-125 chr2 38575422 38575716 + 2 NA intron (NM_138394, intron 7 of 12) intron (NM_138394, intron 7 of 12) 27359 NM_138394 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 208-147 chr20 40804395 40804537 + 2 NA Intergenic Intergenic -89843 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 386-60 chr11 98428207 98428480 + 2 NA Intergenic L1MA9|LINE|L1 -592606 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 361-474 chr9 32776767 32777020 + 2 NA Intergenic LTR84b|LTR|ERVL -6647 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 350-273 chr20 40781953 40782147 + 2 NA Intergenic Intergenic -67427 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 309-167 chr15 24700334 24700585 + 2 NA Intergenic L1MC3|LINE|L1 25065 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 264-339 chr5 125948568 125948763 + 2 NA Intergenic L1MEg|LINE|L1 -230912 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 255-281 chr3 193108844 193109033 + 2 NA Intergenic MER92D|LTR|ERV1 -132284 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 291-127 chr14 64888335 64888573 + 2 NA Intergenic Intergenic -8547 NM_001355436 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 444-47 chr12 16969598 16970006 + 2 NA Intergenic HERVL40-int|LTR|ERVL -18945 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 400-3 chr1 46910276 46910491 + 2 NA Intergenic L1M8|LINE|L1 -9908 NR_002788 163720 Hs.591431 NR_002788 ENSG00000154198 CYP4Z2P - cytochrome P450 family 4 subfamily Z member 2, pseudogene pseudo 219-270 chr4 189348096 189348205 + 2 NA Intergenic L1MCa|LINE|L1 -311456 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 570-2 chr1 44378585 44378989 + 2 NA Intergenic Intergenic -23508 NM_001301700 79033 Hs.731413 NM_024066 ENSG00000117419 ERI3 PINT1|PRNPIP ERI1 exoribonuclease family member 3 protein-coding 378-266 chr21 31864228 31864449 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -8682 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 130-69 chr5 165772787 165772894 + 2 NA Intergenic Intergenic 1153530 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 311-265 chr2 115132035 115132326 + 2 NA intron (NM_001178037, intron 1 of 25) MER4D|LTR|ERV1 29163 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 236-220 chr3 59176753 59176926 + 2 NA Intergenic L1MA3|LINE|L1 -126807 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 316-596 chrUn_GL000216v2 58100 58342 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 261-379 chr8 97215085 97215274 + 2 NA intron (NR_125390, intron 2 of 2) intron (NR_125390, intron 2 of 2) 62749 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 137-56 chr20 48530414 48530485 + 2 NA Intergenic L1M5|LINE|L1 170538 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 646-67 chr2 196385706 196386186 + 2 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) -23769 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 308-345 chr4 83925534 83925717 + 2 NA Intergenic Intergenic 373544 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 289-218 chr2 55981101 55981266 + 2 NA intron (NR_126406, intron 2 of 2) MER65A|LTR|ERV1 1893 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 474-113 chr17 71568595 71568959 + 2 NA Intergenic Intergenic -366598 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 301-302 chr4 17916850 17917090 + 2 NA intron (NR_158563, intron 4 of 5) MSTB|LTR|ERVL-MaLR 104785 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 309-353 chr3 81633432 81633708 + 2 NA intron (NM_000158, intron 7 of 15) intron (NM_000158, intron 7 of 15) 128075 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 322-329 chr3 88081562 88081791 + 2 NA intron (NM_001366093, intron 1 of 7) L1MC4a|LINE|L1 22421 NM_001366097 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 282-241 chr2 187000379 187000582 + 2 NA Intergenic L1MEf|LINE|L1 -151310 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 574-40 chr14 63808880 63809441 + 2 NA Intergenic Intergenic -43805 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 306-478 chr7 83637169 83637396 + 2 NA intron (NM_012431, intron 1 of 16) L1MC3|LINE|L1 4149 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 400-301 chr5 180847908 180848165 + 2 NA 3' UTR (NM_152283, exon 3 of 3) 3' UTR (NM_152283, exon 3 of 3) 13250 NM_152283 643836 Hs.509227 NM_152283 ENSG00000196670 ZFP62 ZET|ZNF755 ZFP62 zinc finger protein protein-coding 414-162 chr2 123328301 123328520 + 2 NA Intergenic L1MB1|LINE|L1 -254929 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 511-239 chr6 148835799 148836239 + 2 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 88989 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 614 chr1 34472476 34472907 + 2 NA Intergenic Intergenic 197003 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 174-113 chr5 118533020 118533169 + 2 NA intron (NR_104610, intron 1 of 9) intron (NR_104610, intron 1 of 9) 29023 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 283-430 chr8 29374997 29375263 + 2 NA Intergenic Intergenic -24446 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 390-27 chr1 241290462 241290682 + 2 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 65254 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 358-408 chr6 78037579 78037787 + 2 NA Intergenic Intergenic 384644 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 333-367 chr3 119793021 119793252 + 2 NA intron (NM_022002, intron 1 of 8) MSTB|LTR|ERVL-MaLR 10426 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 445-56 chr13 50577854 50578156 + 2 NA Intergenic Intergenic -50556 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 546-9 chr1 173595291 173595763 + 2 NA intron (NM_178527, intron 4 of 27) MLT1J|LTR|ERVL-MaLR 7545 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 341-142 chr14 36922963 36923217 + 2 NA intron (NM_001171170, intron 1 of 10) L1MEc|LINE|L1 29301 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 218-93 chr14 47990757 47990930 + 2 NA Intergenic LOR1a|LTR|ERV1 -195829 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 312-494 chr7 107629983 107630197 + 2 NA Intergenic Intergenic -30738 NM_000441 5172 Hs.571246 NM_000441 ENSG00000091137 SLC26A4 DFNB4|EVA|PDS|TDH2B solute carrier family 26 member 4 protein-coding 266-274 chr4 33524911 33525166 + 2 NA Intergenic Intergenic 514855 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 176-101 chr5 27606869 27607009 + 2 NA Intergenic Intergenic 134647 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 375-50 chr10 57477412 57477667 + 2 NA Intergenic L2a|LINE|L2 -172980 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 841-23 chr3 76813733 76814155 + 2 NA Intergenic Intergenic -226155 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 289-369 chr5 60396266 60396490 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -23715 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 241-326 chr6 41468723 41468892 + 2 NA Intergenic Intergenic -33637 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 361-359 chr5 45437562 45437853 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 258673 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 415-44 chr11 47073632 47074030 + 2 NA intron (NM_001003677, intron 3 of 8) intron (NM_001003677, intron 3 of 8) 103048 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 313-327 chr3 17586660 17586912 + 2 NA intron (NM_001349088, intron 2 of 21) intron (NM_001349088, intron 2 of 21) 113234 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 638-27 chr11 82983352 82983743 + 2 NA intron (NM_001286059, intron 4 of 4) AluJb|SINE|Alu 50727 NM_001286059 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 394-198 chr2 237874696 237874927 + 2 NA intron (NM_001308353, intron 2 of 3) intron (NM_001308353, intron 2 of 3) 15188 NM_005855 10267 Hs.471783 NM_005855 ENSG00000132329 RAMP1 - receptor activity modifying protein 1 protein-coding 296-148 chr14 84948512 84948694 + 2 NA Intergenic Intergenic -323329 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 330-539 chr8 136992204 136992484 + 2 NA Intergenic Intergenic 421244 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 342-288 chr20 43419704 43419934 + 2 NA Intergenic L1M2c|LINE|L1 -38077 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 241-311 chr5 102804372 102804544 + 2 NA intron (NR_157231, intron 1 of 14) intron (NR_157231, intron 1 of 14) -3740 NM_001364582 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 300-490 chr9 80751467 80751715 + 2 NA Intergenic Intergenic 776568 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 580-114 chr3 79027185 79027673 + 2 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -7970 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 243-144 chr15 82231603 82231801 + 2 NA intron (NM_001040610, intron 5 of 17) L1MC|LINE|L1 30826 NM_001322845 79631 Hs.459114 NM_024580 ENSG00000140598 EFL1 EFTUD1|FAM42A|HsT19294|RIA1|SDS2 elongation factor like GTPase 1 protein-coding 280-430 chr8 137569891 137570154 + 2 NA Intergenic Intergenic -156434 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 256-301 chr4 177489556 177489721 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -47135 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 363-112 chr12 129199403 129199717 + 2 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) -9041 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 341-85 chr11 63121025 63121326 + 2 NA intron (NM_173586, intron 2 of 3) L1MC2|LINE|L1 23046 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 727-95 chr9 98333657 98334154 + 2 NA intron (NM_005458, intron 13 of 18) MIR|SINE|MIR -78256 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 296-437 chr7 48716779 48717022 + 2 NA Intergenic MIR|SINE|MIR -207647 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 342-298 chr21 32245590 32245794 + 2 NA Intergenic LTR85b|LTR|Gypsy? 33357 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 311-126 chr14 25969742 25969914 + 2 NA Intergenic Intergenic 583602 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 175-93 chr20 32994339 32994484 + 2 NA intron (NM_080675, intron 8 of 12) L1MEg|LINE|L1 10022 NM_080675 140732 Hs.375186 NM_080675 ENSG00000167098 SUN5 SPAG4L|SPGF16|TSARG4|dJ726C3.1 Sad1 and UNC84 domain containing 5 protein-coding 394-309 chr7 85866394 85866615 + 2 NA Intergenic L1PA10|LINE|L1 445382 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 372-70 chr11 29375259 29375465 + 2 NA Intergenic L1M4b|LINE|L1 -219051 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 555-58 chr14 72853253 72853649 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 39198 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 296-273 chr21 15329825 15330000 + 2 NA Intergenic Intergenic -264912 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 402-246 chr4 114914709 114914945 + 2 NA intron (NM_022569, intron 6 of 13) intron (NM_022569, intron 6 of 13) 198793 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 631-99 chr5 40982453 40982915 + 2 NA 3' UTR (NM_000587, exon 18 of 18) 3' UTR (NM_000587, exon 18 of 18) 73187 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 142-81 chr8 119455147 119455227 + 2 NA Intergenic Intergenic 38741 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 326-530 chr8 82234157 82234456 + 2 NA Intergenic Intergenic -392020 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 407-356 chrX 84669953 84670297 + 2 NA Intergenic L1MA3|LINE|L1 -167672 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 429-220 chr4 176406792 176407087 + 2 NA Intergenic L2|LINE|L2 86973 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 317-207 chr19 30106529 30106756 + 2 NA Intergenic LTR16E1|LTR|ERVL 164403 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 374-333 chr6 35531079 35531284 + 2 NA Intergenic AluSx|SINE|Alu -18285 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 304-433 chr5 133193358 133193607 + 2 NA Intergenic Intergenic 141469 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 433-147 chr2 221945883 221946134 + 2 NA Intergenic MIRb|SINE|MIR -352139 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 534-231 chr7 19278112 19278429 + 2 NA Intergenic L1MB1|LINE|L1 -132849 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 536-36 chr10 106212774 106213202 + 2 NA Intergenic Intergenic 72823 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 381-154 chr18 68950799 68951093 + 2 NA intron (NM_001093729, intron 8 of 9) intron (NM_001093729, intron 8 of 9) 152866 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 434-13 chr1 112079825 112080061 + 2 NA Intergenic Intergenic 89407 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 333-573 chr8 92478543 92478801 + 2 NA Intergenic L1MB7|LINE|L1 176822 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 180-171 chr8 87186383 87186546 + 2 NA intron (NM_173538, intron 4 of 10) L2b|LINE|L2 320049 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 399-37 chr10 66426622 66426965 + 2 NA intron (NM_001127384, intron 11 of 17) L1MEd|LINE|L1 -499243 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 285-89 chr12 43300194 43300438 + 2 NA Intergenic Intergenic 145001 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 328-429 chr5 8471424 8471729 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 10651 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 548-215 chr7 78173829 78174244 + 2 NA intron (NM_001301128, intron 13 of 20) intron (NM_001301128, intron 13 of 20) -173206 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 367-483 chr9 134984009 134984301 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -66243 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 481-24 chr10 33846330 33846627 + 2 NA Intergenic Intergenic -73798 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 398-377 chr9 28842040 28842315 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 21529 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 253-9 chr1 78713774 78713970 + 2 NA Intergenic Intergenic 64041 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 463-139 chr2 75993101 75993443 + 2 NA Intergenic L1PA8|LINE|L1 -282357 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 293-127 chr15 26290008 26290186 + 2 NA Intergenic LOR1b|LTR|ERV1 174284 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 274-158 chr16 83516446 83516634 + 2 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 8194 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 115-39 chr5 170585198 170585258 + 2 NA intron (NM_001278339, intron 1 of 7) MIR3|SINE|MIR 81208 NM_014592 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 181-13 chr10 48962397 48962561 + 2 NA intron (NM_020945, intron 53 of 61) intron (NM_020945, intron 53 of 61) 23108 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 323-186 chr17 20250477 20250755 + 2 NA intron (NM_001033553, intron 9 of 14) L1MEg|LINE|L1 -70558 NR_023380 348254 Hs.462475 NR_023380 CCDC144CP CCDC144C coiled-coil domain containing 144C, pseudogene pseudo 489-222 chr6 17331943 17332347 + 2 NA Intergenic L1ME3D|LINE|L1 49444 NM_153020 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 362-243 chr2 228980804 228981113 + 2 NA Intergenic L1MC4|LINE|L1 251134 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 280-410 chr8 86046820 86047076 + 2 NA TTS (NM_033126) TTS (NM_033126) 22720 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 363-66 chr10 113491248 113491478 + 2 NA Intergenic Intergenic -59468 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 552-112 chr2 145415384 145415840 + 2 NA Intergenic L1MCc|LINE|L1 747645 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 265-301 chr5 41699748 41699889 + 2 NA Intergenic MIRb|SINE|MIR 143839 NM_001364303 5019 Hs.278277 NM_000436 ENSG00000083720 OXCT1 OXCT|SCOT 3-oxoacid CoA-transferase 1 protein-coding 549-203 chr8 16952782 16953327 + 2 NA Intergenic L1M1|LINE|L1 49291 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 322-537 chr8 104969477 104969784 + 2 NA Intergenic HAL1|LINE|L1 -348808 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 429-209 chr4 77421696 77421973 + 2 NA Intergenic L1MA7|LINE|L1 -89919 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 140-59 chr6 50248929 50249027 + 2 NA Intergenic Intergenic -199049 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 221-160 chr2 234073537 234073693 + 2 NA intron (NM_006944, intron 7 of 7) intron (NM_006944, intron 7 of 7) 22913 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 353-367 chr4 40590304 40590583 + 2 NA intron (NM_001371114, intron 1 of 5) intron (NM_001371114, intron 1 of 5) 39421 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 182-164 chr7 157107695 157107796 + 2 NA Intergenic LTR8B|LTR|ERV1 -31181 NM_014671 9690 Hs.118351 NM_014671 ENSG00000009335 UBE3C HECTH2 ubiquitin protein ligase E3C protein-coding 300-184 chr2 43884604 43884793 + 2 NA Intergenic Intergenic 45727 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 272-161 chr18 6888213 6888473 + 2 NA intron (NM_001010000, intron 11 of 16) intron (NM_001010000, intron 11 of 16) 41526 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 232-2 chr1 5031649 5031821 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 377126 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 493-114 chr17 78045216 78045636 + 2 NA intron (NM_018996, intron 3 of 20) intron (NM_018996, intron 3 of 20) 41189 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 684-101 chr5 110800609 110801163 + 2 NA Intergenic MER51B|LTR|ERV1 61879 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 447-136 chr2 143048966 143049312 + 2 NA 3' UTR (NM_003937, exon 14 of 14) 3' UTR (NM_003937, exon 14 of 14) -80280 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 547-71 chr14 72257623 72258007 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -259005 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 233-243 chr3 158168375 158168514 + 2 NA intron (NM_001271834, intron 3 of 8) intron (NM_001271834, intron 3 of 8) 58355 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 307-256 chr2 175698358 175698538 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE 303819 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 315-471 chr8 59650441 59650696 + 2 NA Intergenic Intergenic 531358 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 315-277 chr20 42025275 42025538 + 2 NA Intergenic AluJb|SINE|Alu -407029 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 437-28 chr10 85056836 85057086 + 2 NA Intergenic Intergenic 141944 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 396-161 chr2 54365917 54366170 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 35159 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 223-186 chr20 36283512 36283663 + 2 NA Intergenic L1ME3|LINE|L1 -22752 NM_014902 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 402-242 chr4 98039245 98039602 + 2 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 104053 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 455-117 chr2 23103691 23104066 + 2 NA Intergenic Intergenic -281301 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 386-273 chr4 186451269 186451529 + 2 NA intron (NR_033901, intron 1 of 6) intron (NR_033901, intron 1 of 6) 49659 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 284-301 chr4 162976039 162976234 + 2 NA Intergenic L2b|LINE|L2 117492 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 273-165 chr16 73518635 73518839 + 2 NA Intergenic Intergenic 131932 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 271-86 chr12 8126643 8126891 + 2 NA intron (NM_194450, intron 2 of 4) L2b|LINE|L2 3135 NM_194447 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 247-141 chr16 25982202 25982432 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -42920 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 459-150 chr2 134580144 134580560 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 138648 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 369-254 chr22 26261963 26262330 + 2 NA intron (NM_001184776, intron 1 of 14) (AT)n|Simple_repeat|Simple_repeat 92672 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 282-374 chr5 51130115 51130371 + 2 NA Intergenic Intergenic -160056 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 413-37 chr10 56830207 56830576 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -469118 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 174-61 chr2 41210774 41210882 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -666727 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 369-87 chr12 91599681 91599895 + 2 NA Intergenic L1M8|LINE|L1 -416971 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 210-137 chr2 124618419 124618603 + 2 NA intron (NM_130773, intron 12 of 23) intron (NM_130773, intron 12 of 23) 593224 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 360-321 chr4 30560155 30560380 + 2 NA Intergenic L2c|LINE|L2 -160102 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 221-186 chr3 64465752 64465862 + 2 NA Intergenic Intergenic -95539 NR_110151 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 251-400 chr8 117074990 117075188 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -59906 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 251-115 chr15 82839436 82839595 + 2 NA Intergenic Intergenic 29887 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WASP homolog associated with actin, golgi membranes and microtubules protein-coding 353-377 chr4 74113309 74113601 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -9818 NM_001351311 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 249-68 chr11 28479804 28480009 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -2358 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 267-128 chr15 94064711 94064896 + 2 NA intron (NR_120320, intron 2 of 8) MLT1J-int|LTR|ERVL-MaLR 43135 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 251-389 chr8 76821557 76821760 + 2 NA intron (NM_024721, intron 4 of 10) Zaphod3|DNA|hAT-Tip100 -138383 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 216-127 chr16 72774556 72774739 + 2 NA Intergenic L1MEg|LINE|L1 -109677 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 230-282 chr5 2444988 2445157 + 2 NA Intergenic Intergenic -132871 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 325-552 chr8 126773685 126773983 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -215356 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 238-236 chr3 55421355 55421527 + 2 NA Intergenic L1ME3A|LINE|L1 59957 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 331-360 chr3 103258848 103259103 + 2 NA Intergenic L1ME1|LINE|L1 265141 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 223-317 chr7 44523390 44523513 + 2 NA intron (NM_013389, intron 10 of 19) L1M4c|LINE|L1 17879 NM_001300967 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 185-21 chr1 247235581 247235717 + 2 NA Intergenic L1MA4A|LINE|L1 -20423 NM_173858 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 522-264 chr8 138612240 138612602 + 2 NA intron (NM_152888, intron 56 of 64) intron (NM_152888, intron 56 of 64) -114691 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 399-21 chr1 210789549 210789896 + 2 NA intron (NM_002238, intron 9 of 10) intron (NM_002238, intron 9 of 10) 343652 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 562-75 chr17 4260333 4260727 + 2 NA intron (NR_047571, intron 1 of 23) AluJb|SINE|Alu 3317 NM_001257999 51479 Hs.696087 NM_016376 ENSG00000185722 ANKFY1 ANKHZN|BTBD23|ZFYVE14 ankyrin repeat and FYVE domain containing 1 protein-coding 462-227 chr5 92475518 92475893 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -1092388 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 208-9 chr1 147843540 147843667 + 2 NA Intergenic MIRb|SINE|MIR -59192 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 362-126 chr12 125446777 125447014 + 2 NA intron (NM_052907, intron 3 of 8) intron (NM_052907, intron 3 of 8) 120279 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 256-45 chr10 65018890 65019126 + 2 NA Intergenic L1PA15|LINE|L1 -94490 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 724-81 chr6 45200545 45201099 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -3052 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 359-239 chr2 115145243 115145564 + 2 NA intron (NR_036580, intron 1 of 2) L1MC2|LINE|L1 15940 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 143-29 chr15 92583838 92583925 + 2 NA Intergenic Intergenic -11618 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 221-314 chr8 139940621 139940769 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 159840 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 272-317 chr4 115703514 115703741 + 2 NA Intergenic Intergenic -590007 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 358-89 chr12 15727129 15727392 + 2 NA intron (NM_004447, intron 1 of 20) intron (NM_004447, intron 1 of 20) 62128 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 553-94 chr18 65689015 65689395 + 2 NA Intergenic L1MA9|LINE|L1 -61047 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 384-276 chr4 178426071 178426321 + 2 NA Intergenic L1MC4|LINE|L1 -518260 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 350-283 chr21 16540948 16541181 + 2 NA intron (NR_136547, intron 2 of 2) intron (NR_136547, intron 2 of 2) 1236 NR_029480 406885 NR_029480 ENSG00000199030 MIRLET7C LET7C|MIRNLET7C|hsa-let-7c|let-7c microRNA let-7c ncRNA 353 chr1 19983338 19983538 + 2 NA Intergenic L1MC4a|LINE|L1 -3004 NM_001161727 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 540-58 chr12 119512113 119512481 + 2 NA intron (NM_178499, intron 7 of 13) intron (NM_178499, intron 7 of 13) -81477 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 537-49 chr11 131801704 131802029 + 2 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -108058 NM_001352009 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 805-29 chr3 88334096 88334757 + 2 NA Intergenic L1MEf|LINE|L1 -4030 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 822-5 chr1 213294284 213294762 + 2 NA Intergenic Intergenic 243282 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 161-49 chr2 40790100 40790248 + 2 NA Intergenic Intergenic -277739 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 254-307 chr5 41560514 41560723 + 2 NA Intergenic Intergenic -50017 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 140-75 chr8 48720939 48721035 + 2 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 14281 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 438-6 chr1 47358155 47358487 + 2 NA non-coding (NR_046395, exon 2 of 2) non-coding (NR_046395, exon 2 of 2) 24531 NR_046394 51727 Hs.731647 NM_016308 ENSG00000162368 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine/uridine monophosphate kinase 1 protein-coding 794-37 chr5 113883538 113884220 + 2 NA Intergenic L1MB3|LINE|L1 370185 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 436-254 chr5 147123050 147123475 + 2 NA Intergenic L1PA13|LINE|L1 -41742 NM_001271899 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 354-357 chr5 8360034 8360261 + 2 NA intron (NR_039984, intron 3 of 5) intron (NR_039984, intron 3 of 5) 97417 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 119-3 chr1 111550884 111550969 + 2 NA intron (NM_001370216, intron 1 of 7) L1MB7|LINE|L1 8917 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 329-257 chr2 7762317 7762557 + 2 NA Intergenic L1M5|LINE|L1 137218 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 341-170 chr15 70616189 70616437 + 2 NA non-coding (NR_126481, exon 1 of 1) non-coding (NR_126481, exon 1 of 1) 766 NR_126481 104548972 NR_126481 ENSG00000281264 SALRNA3 SAL-RNA3|XLOC_025918 senescence associated long non-coding RNA 3 ncRNA 400-159 chr2 50137194 50137558 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -163173 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 307-339 chr4 71746370 71746541 + 2 NA intron (NM_000583, intron 11 of 12) L2c|LINE|L2 37624 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 248-324 chr5 111780851 111781074 + 2 NA intron (NM_001142474, intron 2 of 3) L1PA13|LINE|L1 -22744 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 385-382 chr8 101009798 101010137 + 2 NA Intergenic Intergenic -42087 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 271-395 chr6 165007708 165007892 + 2 NA Intergenic Intergenic -185737 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 554-103 chr19 12207921 12208264 + 2 NA TTS (NR_104179) TTS (NR_104179) 13077 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 537-89 chr18 14020867 14021320 + 2 NA Intergenic Intergenic -105386 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 382-183 chr2 45837533 45837901 + 2 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 186042 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 525-43 chr11 83065833 83066165 + 2 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) 5463 NM_001286061 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 251-146 chr19 33594849 33595037 + 2 NA Intergenic MIR|SINE|MIR -27010 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 222-20 chr1 207615144 207615327 + 2 NA intron (NM_000573, intron 32 of 38) L2a|LINE|L2 -29898 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 214-133 chr17 72103041 72103197 + 2 NA intron (NR_103738, intron 2 of 6) intron (NR_103738, intron 2 of 6) 12897 NR_103738 400618 Hs.657374 NR_103737 ENSG00000234899 SOX9-AS1 - SOX9 antisense RNA 1 ncRNA 414-46 chr11 69237029 69237315 + 2 NA Intergenic L1MEc|LINE|L1 -56983 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 502-78 chr13 78303963 78304352 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) 249302 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 178-114 chr5 145222352 145222493 + 2 NA Intergenic Intergenic 612920 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 221-187 chr3 73550947 73551116 + 2 NA intron (NR_121660, intron 1 of 1) intron (NR_121660, intron 1 of 1) 10549 NM_001303140 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 321-161 chr14 28886272 28886478 + 2 NA Intergenic Intergenic -100588 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 602-129 chr8 3892493 3893040 + 2 NA intron (NM_033225, intron 5 of 69) Arthur1|DNA|hAT-Tip100 1102148 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 406-224 chr5 29778600 29778973 + 2 NA Intergenic Intergenic -101774 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 370-467 chr9 461880 462209 + 2 NA intron (NM_001193536, intron 45 of 46) L1MEd|LINE|L1 -8247 NM_001256876 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 228-292 chr6 71673172 71673337 + 2 NA Intergenic Intergenic -213449 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 314-517 chr7 382850 383130 + 2 NA TTS (NR_033960) TTS (NR_033960) 3565 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 248-118 chr14 72030101 72030305 + 2 NA intron (NM_001370288, intron 2 of 16) L1MEd|LINE|L1 96676 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 416-214 chr3 12236443 12236726 + 2 NA Intergenic Intergenic -50901 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 307-33 chr1 225090686 225090853 + 2 NA intron (NM_001367479, intron 21 of 85) L1ME1|LINE|L1 161094 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 311-286 chr2 229188915 229189185 + 2 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 43042 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 340-527 chr8 59188037 59188256 + 2 NA Intergenic Intergenic 68936 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 359-450 chr7 50253110 50253310 + 2 NA Intergenic L1MC4|LINE|L1 -50854 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 518-143 chr2 132970124 132970639 + 2 NA intron (NM_207481, intron 7 of 17) intron (NM_207481, intron 7 of 17) 54824 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 332-527 chr8 84937516 84937694 + 2 NA Intergenic MER57-int|LTR|ERV1 -169633 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 448-151 chr3 2459313 2459659 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 220657 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 318-211 chr17 71147947 71148149 + 2 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 54131 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 258-313 chr5 28297726 28297962 + 2 NA Intergenic Intergenic -10179 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 435-262 chr9 37937780 37938044 + 2 NA intron (NM_003028, intron 5 of 5) MIR1_Amn|SINE|MIR -33559 NR_024873 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 128-63 chr6 139813506 139813582 + 2 NA intron (NR_038399, intron 1 of 2) L1ME4b|LINE|L1 -41306 NR_138541 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 379-359 chr8 126431672 126431902 + 2 NA Intergenic MIR|SINE|MIR 106292 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 391-251 chr4 32112569 32112830 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -90277 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 435-251 chr8 117630385 117630723 + 2 NA Intergenic MIRb|SINE|MIR 109841 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 384-141 chr16 88390873 88391069 + 2 NA Intergenic Intergenic -36500 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 268-360 chr7 9906188 9906449 + 2 NA Intergenic L1MB4|LINE|L1 272048 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 314-114 chr12 5358256 5358564 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -73698 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 447-213 chr5 51053816 51054239 + 2 NA Intergenic Intergenic -83840 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 167-30 chr12 126607559 126607689 + 2 NA Intergenic Intergenic 82694 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 343-509 chr7 61934492 61934773 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1369424 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 321-137 chr12 88388769 88388935 + 2 NA Intergenic LOR1-int|LTR|ERV1 191619 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 316-41 chr1 218147113 218147406 + 2 NA Intergenic Intergenic 103754 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 265-332 chr6 23857697 23857886 + 2 NA Intergenic L2a|LINE|L2 -268424 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 115-33 chr4 98370468 98370529 + 2 NA intron (NM_001100430, intron 4 of 12) intron (NM_001100430, intron 4 of 12) 109114 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 192-99 chr2 82865791 82865914 + 2 NA Intergenic Intergenic 9049 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 450-39 chr10 112887254 112887656 + 2 NA Intergenic Intergenic -62792 NM_001198528 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 342-65 chr10 60078371 60078693 + 2 NA intron (NM_020987, intron 36 of 43) intron (NM_020987, intron 36 of 43) 62484 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 210-206 chr4 103619042 103619156 + 2 NA intron (NM_001059, intron 3 of 4) L1P4|LINE|L1 100886 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 358-45 chr10 53983665 53983934 + 2 NA intron (NM_001354411, intron 22 of 34) intron (NM_001354411, intron 22 of 34) -502431 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 355-206 chr18 1741578 1741823 + 2 NA Intergenic Intergenic -382071 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 219-38 chr10 110549919 110550107 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -17678 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 540 chr1 20424853 20425291 + 2 NA intron (NR_033887, intron 1 of 11) L1MB7|LINE|L1 3722 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 254-284 chr4 120128871 120129057 + 2 NA Intergenic Intergenic -62116 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 425-79 chr14 46063991 46064376 + 2 NA promoter-TSS (NR_102701) promoter-TSS (NR_102701) 24 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 396-272 chr5 21622681 21623017 + 2 NA Intergenic MER4B-int|LTR|ERV1 163369 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 247-137 chr15 97568724 97568926 + 2 NA Intergenic Intergenic -8127 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 234-144 chr18 40278752 40278928 + 2 NA Intergenic Intergenic 212554 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 315-160 chr15 95957111 95957290 + 2 NA Intergenic L1MC1|LINE|L1 170641 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 269-192 chr2 50522249 50522390 + 2 NA intron (NM_001330096, intron 7 of 16) intron (NM_001330096, intron 7 of 16) 173943 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 351-345 chr4 56633526 56633734 + 2 NA Intergenic AluJr|SINE|Alu 22892 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 474-86 chr14 83533417 83533730 + 2 NA Intergenic Intergenic 890941 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 411-57 chr11 70944155 70944404 + 2 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -71911 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 278-380 chr6 130796676 130796846 + 2 NA Intergenic Intergenic -30644 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 401-327 chr8 112276143 112276375 + 2 NA intron (NM_001363185, intron 55 of 66) THE1B-int|LTR|ERVL-MaLR -367234 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 267-284 chr4 33016002 33016233 + 2 NA Intergenic Intergenic 665079 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 319-70 chr10 81035361 81035568 + 2 NA Intergenic Intergenic 385667 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 249-328 chr5 26338382 26338606 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 700092 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 339-533 chr7 67521851 67522140 + 2 NA Intergenic MER4B|LTR|ERV1 186019 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 538-245 chr8 128303478 128303956 + 2 NA Intergenic Intergenic 153601 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 359-509 chr9 85331695 85332020 + 2 NA Intergenic Intergenic 410172 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 646-54 chr2 14535234 14535705 + 2 NA Intergenic Intergenic -97248 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 320-36 chr1 208260870 208261185 + 2 NA Intergenic L1MC5|LINE|L1 -16643 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 302-292 chr3 102003940 102004148 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 63185 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 211-306 chr8 113687672 113687820 + 2 NA Intergenic Intergenic -250807 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 330-508 chr8 53180023 53180307 + 2 NA Intergenic L1ME2z|LINE|L1 71472 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 181-90 chr3 46028430 46028556 + 2 NA Intergenic L1M4|LINE|L1 -1010 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 363-168 chr16 72285900 72286245 + 2 NA intron (NR_126330, intron 11 of 13) intron (NR_126330, intron 11 of 13) -113622 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 665-37 chr15 80236472 80236959 + 2 NA intron (NM_001352888, intron 1 of 2) AluSx|SINE|Alu 15498 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 634-39 chr12 18879965 18880546 + 2 NA Intergenic Intergenic 142136 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 181-164 chr8 114540640 114540775 + 2 NA Intergenic L1MB7|LINE|L1 -1103768 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 814-15 chr12 30352951 30353517 + 2 NA Intergenic Intergenic 324010 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 355-474 chr7 86491450 86491676 + 2 NA Intergenic Intergenic -152346 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 310-573 chrX 75813776 75814008 + 2 NA Intergenic L1PB2|LINE|L1 -28638 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 415-199 chr4 60313828 60314135 + 2 NA Intergenic Intergenic -608638 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 530-191 chr5 19065139 19065571 + 2 NA Intergenic Intergenic 820917 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 232-353 chr7 47074575 47074767 + 2 NA Intergenic MIRb|SINE|MIR -377549 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 536-200 chr6 80798045 80798568 + 2 NA Intergenic LTR79|LTR|ERVL 691635 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 272-242 chr20 52501799 52501999 + 2 NA Intergenic Intergenic -118939 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 165 chr1 20544612 20544735 + 2 NA Intergenic L1MB2|LINE|L1 -7900 NM_207334 163933 Hs.429179 NM_207334 ENSG00000183114 FAM43B - family with sequence similarity 43 member B protein-coding 360-98 chr12 108415067 108415306 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 58503 NR_120483 102723562 Hs.455693 NR_120483 ENSG00000247213 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 366-274 chr3 42917427 42917682 + 2 NA 3' UTR (NM_001134656, exon 4 of 4) 3' UTR (NM_001134656, exon 4 of 4) 11412 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 242-150 chr19 12198812 12198990 + 2 NA intron (NR_104179, intron 1 of 1) intron (NR_104179, intron 1 of 1) 3886 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 225-48 chr10 129520371 129520570 + 2 NA intron (NM_002412, intron 1 of 4) intron (NM_002412, intron 1 of 4) 53229 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 346-101 chr12 31825431 31825639 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -33237 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 434-119 chr18 36396378 36396711 + 2 NA intron (NM_001281740, intron 3 of 28) HAL1M8|LINE|L1 98831 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 197-114 chr2 217143763 217143895 + 2 NA Intergenic L1M5|LINE|L1 -138904 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 253-365 chr6 134093640 134093809 + 2 NA Intergenic L1M6|LINE|L1 23956 NR_037938 387065 Hs.571061 NR_037938 HMGA1P7 HMGA1L7 high mobility group AT-hook 1 pseudogene 7 pseudo 359-160 chr15 83677194 83677532 + 2 NA intron (NM_207517, intron 2 of 29) L1MDa|LINE|L1 23240 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 342-16 chr1 90271451 90271757 + 2 NA Intergenic LTR16E2|LTR|ERVL 276494 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 736-55 chr3 98909786 98910299 + 2 NA Intergenic L1PA11|LINE|L1 -8347 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 418-181 chr4 54522926 54523282 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 84027 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 344-33 chr1 209166851 209167096 + 2 NA Intergenic L1MB7|LINE|L1 -158483 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 261-387 chr8 120523386 120523598 + 2 NA 3' UTR (NM_022045, exon 22 of 22) 3' UTR (NM_022045, exon 22 of 22) 78073 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 253-67 chr11 28382361 28382540 + 2 NA Intergenic L1MA4|LINE|L1 95098 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 355-334 chr3 133530965 133531295 + 2 NA Intergenic Intergenic -39984 NR_135277 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 231-188 chr2 218727271 218727452 + 2 NA intron (NM_014640, intron 2 of 19) L1M3f|LINE|L1 16526 NM_014640 9654 Hs.471405 NM_014640 ENSG00000135912 TTLL4 - tubulin tyrosine ligase like 4 protein-coding 202-118 chr2 57577341 57577477 + 2 NA Intergenic Intergenic -330242 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 234-99 chr14 66227782 66227982 + 2 NA Intergenic Intergenic -258489 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 309-525 chr7 145295993 145296224 + 2 NA Intergenic Intergenic -460055 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 616-14 chr10 39147465 39147863 + 2 NA Intergenic ALR/Alpha|Satellite|centr 451068 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 476-37 chr10 108266772 108267196 + 2 NA Intergenic L1MC4a|LINE|L1 -197691 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 183-83 chr2 222235129 222235249 + 2 NA intron (NM_181457, intron 4 of 7) intron (NM_181457, intron 4 of 7) -62958 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 217-311 chr5 145127937 145128113 + 2 NA Intergenic Intergenic 707317 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 298-388 chr5 165999302 165999535 + 2 NA Intergenic Intergenic 926952 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 205-66 chr12 62235914 62236052 + 2 NA Intergenic L1M3f|LINE|L1 -24357 NM_001252079 9958 Hs.434951 NM_006313 ENSG00000135655 USP15 UNPH-2|UNPH4 ubiquitin specific peptidase 15 protein-coding 341-387 chr4 98305504 98305684 + 2 NA intron (NM_021159, intron 2 of 14) intron (NM_021159, intron 2 of 14) 44210 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 236-43 chr10 54341319 54341484 + 2 NA intron (NM_001354411, intron 6 of 34) THE1D|LTR|ERVL-MaLR -144829 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 344-431 chr6 112902357 112902625 + 2 NA Intergenic L1MDa|LINE|L1 530956 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 639-113 chr8 78442036 78442645 + 2 NA Intergenic L3|LINE|CR1 -74000 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 475-215 chr5 12824660 12824928 + 2 NA Intergenic L1PB4|LINE|L1 156935 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 250-73 chr11 88634337 88634517 + 2 NA intron (NM_001143831, intron 3 of 8) Tigger3b|DNA|TcMar-Tigger 129851 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 222-163 chr2 18135571 18135764 + 2 NA Intergenic Intergenic 257000 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 835-48 chr6 39176885 39177534 + 2 NA Intergenic HAL1|LINE|L1 52266 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 290-328 chr5 11754655 11754855 + 2 NA intron (NM_001288717, intron 1 of 20) L1PA15|LINE|L1 149691 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 327-183 chr16 35891660 35891856 + 2 NA Intergenic L1PA16|LINE|L1 145206 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 297-31 chr1 217206858 217207071 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -69262 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 361-150 chr15 26658530 26658860 + 2 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) -29605 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 491-184 chr4 83188526 83188865 + 2 NA Intergenic MER73|LTR|ERVL -73966 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 381-18 chr1 177116449 177116823 + 2 NA intron (NM_207108, intron 1 of 21) L2c|LINE|L2 48076 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 362-61 chr10 54022169 54022408 + 2 NA intron (NM_001354411, intron 20 of 34) intron (NM_001354411, intron 20 of 34) -463942 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 234-360 chr7 40036631 40036837 + 2 NA intron (NM_003718, intron 5 of 13) L1MC5a|LINE|L1 86374 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 512-274 chr8 101851350 101851738 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -60575 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 360-110 chr13 111989787 111990096 + 2 NA intron (NR_120392, intron 1 of 3) THE1D|LTR|ERVL-MaLR 17631 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 451-208 chr7 3171605 3172041 + 2 NA Intergenic Intergenic -13250 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 269-235 chr21 29878594 29878850 + 2 NA intron (NM_000830, intron 1 of 16) MLT1A0|LTR|ERVL-MaLR 61274 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 539-189 chr6 165167062 165167463 + 2 NA Intergenic Intergenic 142343 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 179-30 chr16 78520478 78520610 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 420890 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 202-141 chr20 40870000 40870158 + 2 NA Intergenic Intergenic -110634 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 311-32 chr1 194273325 194273574 + 2 NA Intergenic Intergenic 968704 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 321-500 chr6 77305159 77305429 + 2 NA Intergenic L1MA2|LINE|L1 158728 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 217-326 chr6 66472860 66473057 + 2 NA Intergenic L1MD3|LINE|L1 685079 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 266-138 chr16 59113624 59113771 + 2 NA Intergenic Intergenic -379381 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 439-290 chr8 124589776 124590179 + 2 NA intron (NM_001282971, intron 4 of 14) AluSc|SINE|Alu 50854 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 221-113 chr17 72473832 72473984 + 2 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 118896 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 242-328 chr5 157589923 157590131 + 2 NA Intergenic L1MC1|LINE|L1 -14252 NM_033274 8728 Hs.483944 NM_023038 ENSG00000135074 ADAM19 FKSG34|MADDAM|MLTNB ADAM metallopeptidase domain 19 protein-coding 227-66 chr11 79615280 79615464 + 2 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat -174342 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 363-240 chr2 195401869 195402134 + 2 NA Intergenic Intergenic -254957 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 232-358 chr7 62835977 62836187 + 2 NA Intergenic ALR/Alpha|Satellite|centr 467974 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 356-292 chr20 55727266 55727603 + 2 NA Intergenic Intergenic 278085 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 176-44 chr17 64768344 64768477 + 2 NA intron (NR_026899, intron 3 of 12) (TA)n|Simple_repeat|Simple_repeat -12349 NR_106728 102464831 NR_106728 ENSG00000278581 MIR6080 hsa-mir-6080 microRNA 6080 ncRNA 286-281 chr3 69666770 69666982 + 2 NA Intergenic Intergenic -72588 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 356-261 chr2 128974064 128974383 + 2 NA Intergenic Intergenic 109623 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 326-223 chr19 49570428 49570741 + 2 NA intron (NM_001270960, intron 1 of 8) intron (NM_001270960, intron 1 of 8) 9972 NM_001270960 51070 Hs.7236 NM_015953 ENSG00000142546 NOSIP CGI-25 nitric oxide synthase interacting protein protein-coding 327-177 chr15 85401784 85402068 + 2 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 21323 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 207-131 chr2 43495855 43496010 + 2 NA intron (NM_001083953, intron 25 of 37) intron (NM_001083953, intron 25 of 37) 100042 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 212-97 chr14 56752093 56752245 + 2 NA Intergenic Intergenic 53498 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 389-374 chr8 128467878 128468183 + 2 NA intron (NR_121672, intron 2 of 7) L2a|LINE|L2 96649 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 385-387 chr8 121068056 121068417 + 2 NA Intergenic L1M4b|LINE|L1 -256190 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 260-6 chr1 84185332 84185529 + 2 NA intron (NM_001300915, intron 8 of 11) intron (NM_001300915, intron 8 of 11) 3798 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 252-257 chr3 44636761 44636972 + 2 NA intron (NM_001351734, intron 6 of 6).2 L1MB8|LINE|L1 11830 NM_001024855 10168 Hs.157035 NM_006991 ENSG00000186448 ZNF197 D3S1363E|P18|VHLaK|ZKSCAN9|ZNF166|ZNF20|ZSCAN41 zinc finger protein 197 protein-coding 317-167 chr15 68531968 68532175 + 2 NA intron (NM_001324014, intron 1 of 12) L1ME1|LINE|L1 13698 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 158-101 chr6 104257299 104257396 + 2 NA Intergenic Intergenic 602199 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 372-504 chr8 139994381 139994595 + 2 NA intron (NM_001160372, intron 18 of 22) LTR16E2|LTR|ERVL 106047 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 323-93 chr11 92700875 92701079 + 2 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 214651 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 309-188 chr16 22202322 22202581 + 2 NA Intergenic L1MB7|LINE|L1 -3827 NM_013302 29904 Hs.498892 NM_013302 ENSG00000103319 EEF2K CaMKIII|HSU93850|eEF-2K eukaryotic elongation factor 2 kinase protein-coding 627-58 chr2 108560578 108561039 + 2 NA intron (NM_001193483, intron 1 of 9) L2a|LINE|L2 26453 NM_001193483 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 250-208 chr2 76157777 76157915 + 2 NA Intergenic Intergenic -446931 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 512-112 chr19 52603817 52604272 + 2 NA Intergenic Intergenic 7360 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 359-286 chr20 39574583 39574915 + 2 NA Intergenic Intergenic -350001 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 353-210 chr18 51865389 51865724 + 2 NA Intergenic Intergenic 473514 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 368-312 chr3 177103053 177103333 + 2 NA intron (NM_001321194, intron 1 of 16) intron (NM_001321194, intron 1 of 16) 93285 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 244-102 chr14 103250119 103250300 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 -61181 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 304-227 chr19 51250817 51250995 + 2 NA promoter-TSS (NR_102324) promoter-TSS (NR_102324) -174 NR_102324 284369 Hs.381087 NM_173635 ENSG00000179213 SIGLECL1 C19orf75|SIGLEC23P|SIGLECP7 SIGLEC family like 1 protein-coding 454-159 chr2 98212674 98212969 + 2 NA intron (NR_144297, intron 13 of 18) intron (NR_144297, intron 13 of 18) 63288 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 314-486 chr5 165051763 165051999 + 2 NA Intergenic AluJr|SINE|Alu 581602 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 359-110 chr12 19536306 19536659 + 2 NA Intergenic Intergenic 95883 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 117-39 chr7 26937298 26937370 + 2 NA Intergenic Intergenic -72744 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 227-179 chr2 118644897 118645086 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -42025 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 319-582 chrX 62885459 62885736 + 2 NA Intergenic L1M2|LINE|L1 465735 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 343-513 chr7 80766833 80767013 + 2 NA intron (NM_006379, intron 12 of 17) MER50|LTR|ERV1 120270 NM_001289908 948 Hs.120949 NM_000072 ENSG00000135218 CD36 BDPLT10|CHDS7|FAT|GP3B|GP4|GPIV|PASIV|SCARB3 CD36 molecule protein-coding 306-370 chr4 154429011 154429176 + 2 NA intron (NM_001358235, intron 1 of 19) intron (NM_001358235, intron 1 of 19) 62706 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 350-251 chr2 151391830 151392047 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -12567 NR_110248 101929319 Hs.639241 NR_110248 LOC101929319 - uncharacterized LOC101929319 ncRNA 282-198 chr2 41051365 41051589 + 2 NA Intergenic Intergenic -539042 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 447-185 chr3 164521299 164521672 + 2 NA Intergenic MER52A|LTR|ERV1 309995 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 364-475 chr9 93901194 93901514 + 2 NA Intergenic Intergenic 54001 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 301-17 chr1 181819095 181819392 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 242469 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 252-424 chr8 97642744 97642983 + 2 NA Intergenic Intergenic -1321 NM_001363139 92140 Hs.377155 NM_178812 ENSG00000147649 MTDH 3D3|AEG-1|AEG1|LYRIC|LYRIC/3D3 metadherin protein-coding 283-438 chr8 79468143 79468350 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 136058 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 289-452 chr7 146733817 146734049 + 2 NA Intergenic Intergenic -40338 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 376-387 chr7 87141383 87141632 + 2 NA Intergenic Intergenic 10810 NR_136252 101927420 Hs.633960 NR_136252 ENSG00000224046 LOC101927420 - uncharacterized LOC101927420 ncRNA 250-137 chr15 60287354 60287534 + 2 NA Intergenic L2a|LINE|L2 110542 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 343-58 chr10 85740484 85740706 + 2 NA intron (NM_017551, intron 8 of 15) L2c|LINE|L2 162864 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 294-358 chr5 6892900 6893166 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -65112 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 310-476 chr7 40505987 40506267 + 2 NA intron (NM_001193312, intron 11 of 12) L1M4b|LINE|L1 371151 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 310-332 chr3 95419175 95419481 + 2 NA Intergenic Intergenic 263865 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 313-344 chr3 65918052 65918353 + 2 NA intron (NR_046575, intron 2 of 2) intron (NR_046575, intron 2 of 2) 24386 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 609-65 chr20 3501589 3502037 + 2 NA intron (NM_001323332, intron 1 of 25) L1MEg|LINE|L1 30795 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 316-17 chr1 85920225 85920500 + 2 NA intron (NM_152890, intron 24 of 59) L2c|LINE|L2 -211929 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 273-261 chr20 47621902 47622073 + 2 NA intron (NM_181659, intron 2 of 22) intron (NM_181659, intron 2 of 22) 120100 NM_006534 8202 Hs.592142 NM_006534 ENSG00000124151 NCOA3 ACTR|AIB-1|AIB1|CAGH16|CTG26|KAT13B|RAC3|SRC-3|SRC3|TNRC14|TNRC16|TRAM-1|bHLHe42|pCIP nuclear receptor coactivator 3 protein-coding 421-196 chr3 145155617 145155979 + 2 NA Intergenic L1MC2|LINE|L1 913387 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 413-184 chr3 26845710 26845992 + 2 NA Intergenic AluY|SINE|Alu 151294 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 297-165 chr16 78881947 78882176 + 2 NA intron (NM_001291997, intron 7 of 7) AluSz|SINE|Alu 718676 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 217-297 chr5 65864890 65865052 + 2 NA Intergenic L1ME4b|LINE|L1 -61583 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 272-183 chr2 53280535 53280741 + 2 NA Intergenic Intergenic -487145 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 459-147 chr2 119043469 119043763 + 2 NA Intergenic L1MA9|LINE|L1 101447 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 320-606 chrX 57396002 57396182 + 2 NA intron (NM_001353840, intron 7 of 9) L1PB4|LINE|L1 109238 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 264-157 chr16 73862174 73862360 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 353254 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 314-492 chr6 23557893 23558157 + 2 NA Intergenic L1MC1|LINE|L1 -568190 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 309-71 chr11 15026557 15026730 + 2 NA Intergenic HUERS-P1-int|LTR|ERV1 -46950 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 351-273 chr21 26446097 26446310 + 2 NA intron (NR_135515, intron 1 of 3) L1ME4b|LINE|L1 40260 NR_135515 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 636-80 chr2 122667115 122667576 + 2 NA Intergenic Intergenic 406136 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 319-543 chr8 115265470 115265722 + 2 NA Intergenic Intergenic 402417 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 350-397 chr5 63451589 63451910 + 2 NA Intergenic AluSx|SINE|Alu 510543 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 241-295 chr5 33339926 33340101 + 2 NA Intergenic Intergenic -100683 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 281-33 chr10 19870203 19870377 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 53858 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 727-92 chr9 83447794 83448217 + 2 NA intron (NM_174938, intron 1 of 13) intron (NM_174938, intron 1 of 13) 19737 NM_001244960 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 781-30 chr19 39636651 39637253 + 2 NA Intergenic Intergenic -1733 NR_026870 100129935 Hs.659307 NR_026870 ENSG00000268153 LOC100129935 - galectin 14 pseudogene pseudo 296-348 chr4 113859566 113859820 + 2 NA Intergenic Intergenic -97766 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 284-418 chr8 127099514 127099663 + 2 NA Intergenic MIR|SINE|MIR -17367 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 345-378 chr4 32323238 32323491 + 2 NA Intergenic MER83B-int|LTR|ERV1 -27674 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 315-257 chr2 130720996 130721232 + 2 NA Intergenic Intergenic -7956 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 390-21 chr1 186814774 186815041 + 2 NA Intergenic Intergenic -13993 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 637-33 chr13 101289475 101290024 + 2 NA intron (NM_001350749, intron 9 of 43) intron (NM_001350749, intron 9 of 43) 126759 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 189-49 chr13 102997570 102997749 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 68758 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 381-2 chr1 13969694 13969912 + 2 NA Intergenic Intergenic 220388 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 326-578 chr9 110689026 110689296 + 2 NA intron (NM_001166281, intron 3 of 11) (TA)n|Simple_repeat|Simple_repeat 20370 NM_005592 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 318-214 chr18 7497736 7497992 + 2 NA Intergenic Intergenic -36858 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 332-294 chr20 33829410 33829641 + 2 NA intron (NM_176812, intron 1 of 4) intron (NM_176812, intron 1 of 4) 18177 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 526-101 chr17 70166931 70167412 + 2 NA non-coding (NR_036534, exon 1 of 1) non-coding (NR_036534, exon 1 of 1) 2231 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 349-238 chr2 13875096 13875426 + 2 NA Intergenic Intergenic 525697 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 220-398 chrX 70513447 70513599 + 2 NA Intergenic FAM|SINE|Alu -57529 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 378-115 chr13 29648707 29648941 + 2 NA intron (NR_135320, intron 1 of 1) L1M4|LINE|L1 1131 NR_135320 102723345 Hs.121353 NR_135320 LOC102723345 - uncharacterized LOC102723345 ncRNA 675-5 chr1 88243455 88244034 + 2 NA Intergenic L1PA7|LINE|L1 -440400 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 323-491 chr7 43161223 43161419 + 2 NA intron (NR_135295, intron 5 of 6) intron (NR_135295, intron 5 of 6) 10426 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 275-245 chr3 46820188 46820435 + 2 NA Intergenic AluYc|SINE|Alu -7737 NR_160551 729756 NR_160551 PRSS44P PRSS44|TESSP-4|TESSP4 serine protease 44, pseudogene pseudo 354-387 chr5 161776084 161776325 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie -70987 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 342-186 chr17 9327421 9327675 + 2 NA intron (NM_004853, intron 7 of 7) MER39|LTR|ERV1 -148430 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 201-33 chr10 81947251 81947404 + 2 NA intron (NR_163253, intron 2 of 10) MLT1C|LTR|ERVL-MaLR 69640 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 184-162 chr7 114064332 114064490 + 2 NA Intergenic UCON5|Unknown|Unknown -21916 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 137-22 chr13 85402792 85402918 + 2 NA intron (NR_046989, intron 1 of 3) L1MEi|LINE|L1 39252 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 357-205 chr2 86070779 86071066 + 2 NA intron (NM_015425, intron 12 of 33) intron (NM_015425, intron 12 of 33) 34964 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 515-87 chr17 61087072 61087450 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 280443 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 236-171 chr2 77061995 77062184 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 76124 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 278-42 chr10 81562389 81562551 + 2 NA Intergenic L1ME3D|LINE|L1 -312724 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 208-256 chr8 25995351 25995517 + 2 NA intron (NM_022659, intron 6 of 15) L1M6|LINE|L1 49979 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 235-65 chr11 50405444 50405596 + 2 NA Intergenic ALR/Alpha|Satellite|centr -3627 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 172-10 chr10 24988408 24988531 + 2 NA intron (NM_001270383, intron 4 of 5) (TA)n|Simple_repeat|Simple_repeat 27689 NM_145010 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 350-13 chr1 101839935 101840223 + 2 NA intron (NM_058170, intron 1 of 5) intron (NM_058170, intron 1 of 5) 7001 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 365-395 chr8 51200082 51200332 + 2 NA Intergenic L1M3|LINE|L1 609238 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 238-100 chr14 54241803 54241950 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -154992 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 526-2 chr1 49205192 49205652 + 2 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -51989 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 380-124 chr14 63823340 63823699 + 2 NA Intergenic L1MB8|LINE|L1 -29446 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 374-247 chr3 79328926 79329247 + 2 NA intron (NM_002941, intron 2 of 30) L3|LINE|CR1 -82641 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 330-95 chr11 60967518 60967737 + 2 NA Intergenic L1MEd|LINE|L1 -4053 NM_006725 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 677-23 chr12 45322484 45322924 + 2 NA intron (NM_001025356, intron 2 of 19) intron (NM_001025356, intron 2 of 19) 30014 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 174-114 chr5 121705721 121705831 + 2 NA Intergenic L2a|LINE|L2 -146106 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 265-330 chr6 18840184 18840395 + 2 NA Intergenic Intergenic 268505 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 623-101 chr5 34746899 34747503 + 2 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 59642 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 406-174 chr21 21475204 21475522 + 2 NA intron (NM_001352592, intron 15 of 18) L2a|LINE|L2 261956 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 467-12 chr1 112424251 112424655 + 2 NA intron (NM_018704, intron 3 of 5) L1ME1|LINE|L1 28239 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 427-67 chr14 20101150 20101446 + 2 NA Intergenic L1MC4|LINE|L1 -16170 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 331-320 chr20 52770965 52771165 + 2 NA Intergenic L1MD1|LINE|L1 150227 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 138-21 chr14 25240319 25240397 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -190061 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 388-102 chr14 28436528 28436729 + 2 NA Intergenic Intergenic 328691 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 360-491 chr9 103420432 103420739 + 2 NA Intergenic Intergenic -95552 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 420-219 chr5 3806851 3807223 + 2 NA Intergenic Intergenic 211205 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 392-7 chr1 112136526 112136757 + 2 NA Intergenic Intergenic 146105 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 219-226 chr3 3549065 3549213 + 2 NA Intergenic L1M4c|LINE|L1 -250292 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 272-494 chrX 152575663 152575923 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -62102 NM_018558 55879 Hs.283081 NM_018558 ENSG00000268089 GABRQ THETA gamma-aminobutyric acid type A receptor theta subunit protein-coding 210-277 chr7 153505806 153505944 + 2 NA Intergenic MLT2B4|LTR|ERVL -93641 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 423-178 chr3 88963170 88963517 + 2 NA Intergenic LTR16A|LTR|ERVL -144278 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 404-69 chr11 131061954 131062320 + 2 NA Intergenic Intergenic -145650 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 581-185 chr9 122719908 122720319 + 2 NA Intergenic Intergenic -3877 NM_001005235 254973 Hs.626838 NM_001005235 ENSG00000136939 OR1L4 OR1L5|OR9-29|OR9-E|OST046 olfactory receptor family 1 subfamily L member 4 protein-coding 320-542 chr8 68546339 68546618 + 2 NA intron (NR_146186, intron 7 of 12) L1ME2|LINE|L1 -214987 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 461-56 chr11 133760279 133760714 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 49880 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 380-359 chr7 32015772 32016083 + 2 NA intron (NM_001322059, intron 3 of 17) MER66B|LTR|ERV1 54480 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 328-156 chr14 68623620 68623861 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 5047 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 723-11 chr10 23704542 23705056 + 2 NA intron (NM_001098500, intron 1 of 18) L1MB7|LINE|L1 10072 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 417-134 chr2 67438105 67438518 + 2 NA Intergenic LTR85b|LTR|Gypsy? 40978 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 261-231 chr3 15753399 15753591 + 2 NA intron (NM_001349279, intron 4 of 28) intron (NM_001349279, intron 4 of 28) 3052 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 329-403 chr4 38770802 38771014 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 12082 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 384-143 chr17 58926533 58926770 + 2 NA intron (NM_014906, intron 1 of 6) Charlie15b|DNA|hAT-Charlie 170782 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 194-225 chr9 82527715 82527828 + 2 NA Intergenic L1MEc|LINE|L1 535371 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 392-202 chr3 77349311 77349634 + 2 NA intron (NM_001290039, intron 2 of 26) MamRep605|LTR?|LTR? 251460 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 352-121 chr12 126559931 126560144 + 2 NA Intergenic Intergenic -110710 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 188-168 chr5 90374998 90375144 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 34715 NM_004365 1070 Hs.591767 NM_004365 ENSG00000153140 CETN3 CDC31|CEN3 centrin 3 protein-coding 160-10 chr1 223547899 223548032 + 2 NA intron (NM_001143962, intron 16 of 20) intron (NM_001143962, intron 16 of 20) 117736 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 184-148 chr6 159155772 159155924 + 2 NA Intergenic L1MEd|LINE|L1 -13552 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 416-271 chr5 36091139 36091380 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -24377 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 279-202 chr2 171566346 171566505 + 2 NA Intergenic Intergenic 43951 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 387-25 chr1 232046782 232047138 + 2 NA Intergenic Intergenic 121126 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 351-431 chr6 164596588 164596890 + 2 NA Intergenic Intergenic 225324 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 302-213 chr2 76351714 76351884 + 2 NA Intergenic Intergenic -634166 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 393-307 chr6 61679009 61679262 + 2 NA TTS (NM_001350622) TTS (NM_001350622) 105005 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 214-298 chr7 45429326 45429537 + 2 NA Intergenic LTR24B|LTR|ERV1 -144709 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 391-23 chr1 192552555 192552787 + 2 NA Intergenic Intergenic -23102 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 520-157 chr2 166789587 166790048 + 2 NA Intergenic L1MB7|LINE|L1 -98670 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 271-232 chr20 47143137 47143363 + 2 NA intron (NM_172110, intron 10 of 13) (TTTCTT)n|Simple_repeat|Simple_repeat -23717 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 653-75 chr2 161662365 161662894 + 2 NA intron (NM_001354451, intron 1 of 25) intron (NM_001354451, intron 1 of 25) 38213 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 258-64 chr11 23860745 23860988 + 2 NA Intergenic Intergenic -441676 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 372-403 chr5 69059015 69059288 + 2 NA Intergenic L1MA3|LINE|L1 -29224 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 346-497 chr8 124885159 124885367 + 2 NA Intergenic MER31B|LTR|ERV1 -56745 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 351-287 chr3 7134092 7134356 + 2 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -240207 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 609-91 chr4 147128097 147128556 + 2 NA Intergenic Intergenic -182440 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 340-47 chr10 50238279 50238597 + 2 NA intron (NM_001143974, intron 3 of 18) intron (NM_001143974, intron 3 of 18) 10172 NM_019893 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 341-35 chr1 175262805 175263018 + 2 NA Intergenic HAL1|LINE|L1 -69924 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 562-219 chr8 104068961 104069356 + 2 NA intron (NR_145711, intron 17 of 21) MER47A|DNA|TcMar-Tigger -154177 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 346-86 chr12 2710688 2710861 + 2 NA Intergenic Intergenic -19617 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 240-161 chr15 85105209 85105420 + 2 NA intron (NM_001243137, intron 11 of 21) intron (NM_001243137, intron 11 of 21) 123340 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 335-453 chr6 3634765 3634951 + 2 NA Intergenic L1MB5|LINE|L1 117154 NM_183373 221749 Hs.484500 NM_183373 ENSG00000168994 PXDC1 C6orf145 PX domain containing 1 protein-coding 329-232 chr18 13045225 13045457 + 2 NA intron (NM_032142, intron 15 of 44) intron (NM_032142, intron 15 of 44) 53979 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 728-13 chr11 70773263 70773774 + 2 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -89272 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 422-231 chr5 9989708 9989997 + 2 NA Intergenic Intergenic -86028 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 325-546 chr8 119282235 119282455 + 2 NA Intergenic Intergenic -35488 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 567-125 chr3 170940046 170940460 + 2 NA Intergenic L1MD|LINE|L1 -31616 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 847 chr1 104287331 104287810 + 2 NA Intergenic L1M2|LINE|L1 214547 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 217-264 chr4 87525546 87525698 + 2 NA intron (NM_001128310, intron 1 of 11) intron (NM_001128310, intron 1 of 11) 3881 NM_004684 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 689-75 chr5 18798572 18799014 + 2 NA Intergenic L1MEc|LINE|L1 991519 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 353-243 chr2 51306727 51306962 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 274243 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 290-31 chr1 219516120 219516357 + 2 NA intron (NR_135822, intron 1 of 3) MLT1D|LTR|ERVL-MaLR 41086 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 242-123 chr16 26415821 26416023 + 2 NA Intergenic Intergenic 390685 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 217-69 chr11 41808737 41808913 + 2 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 94257 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 606-4 chr1 79307311 79307847 + 2 NA Intergenic Intergenic -300849 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 368-359 chr5 43259296 43259492 + 2 NA intron (NR_072980, intron 2 of 3) L1PB3|LINE|L1 53787 NM_001364188 3157 Hs.397729 NM_002130 ENSG00000112972 HMGCS1 HMGCS 3-hydroxy-3-methylglutaryl-CoA synthase 1 protein-coding 362-385 chr6 139120085 139120313 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -14881 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 415-204 chr5 1680400 1680719 + 2 NA Intergenic L1MA4A|LINE|L1 28309 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 447-280 chr8 127321593 127322008 + 2 NA intron (NR_117100, intron 5 of 5) MSTB|LTR|ERVL-MaLR 77163 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 228-163 chr2 61784622 61784796 + 2 NA Intergenic Intergenic 69351 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 287-434 chr9 35145284 35145448 + 2 NA Intergenic LTR25-int|LTR|ERV1 -16643 NM_001371189 315-511 chr9 34864635 34864824 + 2 NA Intergenic L1M1|LINE|L1 -26143 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 1014-10 chr19 9389357 9390244 + 2 NA Intergenic MSTC-int|LTR|ERVL-MaLR 13484 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 326-13 chr1 70457595 70457766 + 2 NA Intergenic MER65C|LTR|ERV1 46412 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 246-373 chr7 68028420 68028649 + 2 NA intron (NR_120514, intron 4 of 5) intron (NR_120514, intron 4 of 5) 8281 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 367-61 chr10 107303636 107303921 + 2 NA Intergenic Intergenic -139072 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 233-142 chr18 65709967 65710132 + 2 NA Intergenic Intergenic -40203 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 245-183 chr2 29467282 29467469 + 2 NA intron (NM_004304, intron 4 of 28) L2a|LINE|L2 8002 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 337-257 chr2 81787297 81787476 + 2 NA Intergenic Intergenic -320440 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 316-546 chr8 78620825 78621051 + 2 NA Intergenic L1MC3|LINE|L1 -45151 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 679-99 chr7 32192814 32193402 + 2 NA intron (NM_001322059, intron 2 of 17) L1MD1|LINE|L1 106220 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 373-383 chr7 68121147 68121400 + 2 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat 101020 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 435-183 chr5 12181132 12181443 + 2 NA Intergenic Intergenic -276841 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 144-90 chr6 63551455 63551563 + 2 NA Intergenic Intergenic -20503 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 231-39 chr10 71112160 71112317 + 2 NA Intergenic L1M3f|LINE|L1 -100332 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 179-125 chr8 127074279 127074412 + 2 NA intron (NR_119373, intron 3 of 3) L3|LINE|CR1 -5529 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 750-31 chr2 18222462 18223095 + 2 NA Intergenic L1MC4|LINE|L1 337875 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 327-65 chr10 101972851 101973171 + 2 NA intron (NM_024541, intron 20 of 25) intron (NM_024541, intron 20 of 25) 83162 NM_024541 79591 Hs.16004 NM_024541 ENSG00000120029 ARMH3 C10orf76 armadillo like helical domain containing 3 protein-coding 460-139 chr2 66352739 66353183 + 2 NA Intergenic L1PA5|LINE|L1 5367 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 551-76 chr18 71370776 71371158 + 2 NA Intergenic L1MB7|LINE|L1 207989 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 307-299 chr3 42914646 42914899 + 2 NA exon (NM_001134656, exon 4 of 4) exon (NM_001134656, exon 4 of 4) 8630 NM_207404 389114 Hs.720173 NM_207404 ENSG00000182983 ZNF662 - zinc finger protein 662 protein-coding 231-135 chr18 38090363 38090548 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 433320 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 382-163 chr19 37543792 37544134 + 2 NA TTS (NM_001013659) TTS (NM_001013659) -4986 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 459-231 chr5 24759184 24759543 + 2 NA Intergenic L1PB4|LINE|L1 81220 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 381-91 chr12 127829779 127829994 + 2 NA Intergenic Intergenic -51731 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 371-18 chr1 170322905 170323179 + 2 NA Intergenic L1PA15|LINE|L1 -38834 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 390-413 chr9 29102343 29102640 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 109808 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 329-86 chr10 131003225 131003410 + 2 NA Intergenic Intergenic -40649 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 293-51 chr11 2117540 2117741 + 2 NA Intergenic L1MEf|LINE|L1 16569 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 301-228 chr2 150815082 150815263 + 2 NA Intergenic Intergenic 186275 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 205-52 chr11 39486305 39486482 + 2 NA Intergenic Intergenic 806737 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 383-119 chr14 80037722 80037938 + 2 NA Intergenic L1MA8|LINE|L1 -173589 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 249-305 chr4 124840960 124841112 + 2 NA Intergenic L1MA3|LINE|L1 -128304 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 248-433 chr9 79951750 79951931 + 2 NA intron (NR_121213, intron 1 of 2) intron (NR_121213, intron 1 of 2) -23183 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 272-315 chr4 98551140 98551356 + 2 NA intron (NM_005723, intron 1 of 7) L1PB4|LINE|L1 107363 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 324-474 chr6 132986844 132987107 + 2 NA Intergenic Intergenic -101105 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 336-99 chr11 78795276 78795479 + 2 NA intron (NM_001098816, intron 15 of 33) intron (NM_001098816, intron 15 of 33) -220513 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 326-98 chr11 41984693 41984870 + 2 NA Intergenic L1MA9|LINE|L1 100677 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 630-65 chr2 180487907 180488301 + 2 NA Intergenic L1PB4|LINE|L1 -204000 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 316-66 chr10 42575526 42575788 + 2 NA intron (NR_130951, intron 3 of 3) intron (NR_130951, intron 3 of 3) -22787 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 297-184 chr18 10216390 10216574 + 2 NA Intergenic Intergenic 197888 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 297-206 chr2 35154385 35154592 + 2 NA Intergenic L1PA16|LINE|L1 -316917 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 260-276 chr3 97220244 97220412 + 2 NA intron (NM_001080448, intron 3 of 17) THE1D-int|LTR|ERVL-MaLR -219279 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 342-109 chr12 33235138 33235458 + 2 NA Intergenic Intergenic 204521 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 333-122 chr12 119286183 119286350 + 2 NA intron (NR_024246, intron 2 of 3) L1MC5a|LINE|L1 17114 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 185-20 chr1 244849668 244849841 + 2 NA TTS (NM_004501) TTS (NM_004501) 4463 NR_132782 106635532 NR_132782 SNORA100 - small nucleolar RNA, H/ACA box 100 snoRNA 706-72 chr7 97525539 97526138 + 2 NA Intergenic Intergenic -206248 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 188-175 chr5 164103430 164103542 + 2 NA Intergenic L2c|LINE|L2 363916 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 539-43 chr11 127728284 127728647 + 2 NA Intergenic Intergenic 457395 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 524-50 chr13 34828169 34828490 + 2 NA Intergenic Intergenic -113958 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 767-42 chr6 39146753 39147370 + 2 NA Intergenic MLT2D|LTR|ERVL -31875 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 359-24 chr1 163892830 163893034 + 2 NA Intergenic Intergenic -469741 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 458-6 chr1 170421233 170421586 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -110713 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 281-56 chr10 126963275 126963456 + 2 NA intron (NM_001290223, intron 1 of 51) L1MB3|LINE|L1 57956 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 247-281 chr3 187226934 187227111 + 2 NA intron (NM_001879, intron 11 of 15) MER5A1|DNA|hAT-Charlie -19393 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 592-110 chr3 83350171 83350581 + 2 NA Intergenic Intergenic 1364234 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 376-380 chr7 71255825 71256173 + 2 NA intron (NM_022479, intron 1 of 10) MER4B|LTR|ERV1 -51675 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 413-92 chr14 90243983 90244297 + 2 NA Intergenic MER4B-int|LTR|ERV1 -12413 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 314-171 chr14 59144130 59144345 + 2 NA Intergenic Intergenic -44430 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 273-466 chr8 139580897 139581126 + 2 NA Intergenic Intergenic 122112 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 279-15 chr1 102979866 102980067 + 2 NA intron (NR_134980, intron 31 of 67) intron (NR_134980, intron 31 of 67) 128530 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 289-73 chr10 130280399 130280564 + 2 NA Intergenic Intergenic 144072 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 508-270 chrX 154921977 154922289 + 2 NA intron (NM_000132, intron 14 of 25) L2a|LINE|L2 -34675 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 382-414 chr8 107277294 107277638 + 2 NA intron (NM_001199859, intron 7 of 8) intron (NM_001199859, intron 7 of 8) 59049 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 238-224 chr22 47277614 47277787 + 2 NA Intergenic Intergenic -67871 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 234-347 chr6 135684419 135684582 + 2 NA intron (NR_152842, intron 4 of 5) intron (NR_152842, intron 4 of 5) -167201 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 363-91 chr11 109951089 109951339 + 2 NA Intergenic L1MD1|LINE|L1 -142178 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 426-193 chr3 178618923 178619325 + 2 NA intron (NM_001278911, intron 1 of 4) L2a|LINE|L2 60274 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 345-345 chr3 33702239 33702478 + 2 NA intron (NM_001365634, intron 1 of 35) L1MB8|LINE|L1 15896 NM_001365629 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 553-45 chr12 38467524 38467939 + 2 NA Intergenic Intergenic 150957 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 371-106 chr14 61566860 61567129 + 2 NA intron (NR_110417, intron 1 of 3) L2b|LINE|L2 3200 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 289-508 chrX 113116591 113116770 + 2 NA intron (NR_110399, intron 3 of 3) L1ME3A|LINE|L1 73953 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 316-57 chr10 18912014 18912211 + 2 NA Intergenic MER3|DNA|hAT-Charlie -136689 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 396-365 chr8 142383685 142383910 + 2 NA intron (NM_001366903, intron 1 of 9) L1M7|LINE|L1 19385 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 635-19 chr10 107292730 107293150 + 2 NA Intergenic Intergenic -128234 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 202-257 chr8 108290215 108290376 + 2 NA Intergenic Intergenic -41578 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 555-148 chr4 86209058 86209516 + 2 NA intron (NM_001363657, intron 2 of 13) L1ME3Cz|LINE|L1 89481 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 398-231 chr4 15315183 15315503 + 2 NA intron (NR_125911, intron 1 of 5) intron (NR_125911, intron 1 of 5) -24645 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 414-55 chr11 115057403 115057739 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -276006 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 286-287 chr3 97594367 97594589 + 2 NA intron (NM_001080448, intron 12 of 17) intron (NM_001080448, intron 12 of 17) 154871 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 392-354 chrX 27108384 27108768 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 354765 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 335-398 chr4 149536767 149537093 + 2 NA intron (NM_001363507, intron 12 of 13) intron (NM_001363507, intron 12 of 13) 278913 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 441-10 chr1 111198852 111199246 + 2 NA intron (NM_001271833, intron 2 of 11) intron (NM_001271833, intron 2 of 11) 1597 NM_024901 79961 Hs.557850 NM_024901 ENSG00000162777 DENND2D - DENN domain containing 2D protein-coding 432-88 chr15 91529551 91529884 + 2 NA Intergenic Intergenic 66378 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 152-85 chr7 41188451 41188596 + 2 NA Intergenic L2b|LINE|L2 86919 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 575-178 chr7 12748084 12748474 + 2 NA Intergenic MER41B|LTR|ERV1 60646 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 307-365 chr5 3282628 3282787 + 2 NA Intergenic Intergenic 104872 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 306-558 chrX 58440593 58440809 + 2 NA Intergenic ALR/Alpha|Satellite|centr -530068 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 144-31 chr16 48556029 48556137 + 2 NA intron (NM_153029, intron 2 of 6) intron (NM_153029, intron 2 of 6) 54097 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 358-267 chr20 58192738 58192990 + 2 NA Intergenic LTR88b|LTR|Gypsy? 35789 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 220-110 chr14 72197009 72197190 + 2 NA intron (NM_001370288, intron 2 of 16) AluSz|SINE|Alu 263572 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 585-18 chr10 104364079 104364504 + 2 NA intron (NM_001008723, intron 3 of 17) intron (NM_001008723, intron 3 of 17) 10458 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 307-524 chr9 109002343 109002527 + 2 NA intron (NM_003798, intron 1 of 18) MLT1F1-int|LTR|ERVL-MaLR 11064 NM_001286974 8727 Hs.58488 NM_003798 ENSG00000119326 CTNNAL1 ACRP|CLLP|alpha-CATU catenin alpha like 1 protein-coding 336-344 chr21 32054295 32054474 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 31911 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 362-388 chr6 146458965 146459267 + 2 NA Intergenic L1MA4|LINE|L1 -84717 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 318-566 chr9 1257606 1257815 + 2 NA Intergenic L1MA4|LINE|L1 206223 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 316-232 chr18 77415703 77415991 + 2 NA Intergenic Intergenic 165999 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 333-281 chr2 193466895 193467202 + 2 NA Intergenic Intergenic 717203 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 334-28 chr1 163373012 163373197 + 2 NA Intergenic Intergenic 50087 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 131-53 chr3 182936291 182936390 + 2 NA Intergenic Intergenic 44198 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 173-120 chr6 147343908 147344048 + 2 NA intron (NM_001127715, intron 21 of 27) intron (NM_001127715, intron 21 of 27) -139364 NR_034115 729178 Hs.557608 NR_034115 STXBP5-AS1 - STXBP5 antisense RNA 1 ncRNA 387-370 chr8 111538591 111538931 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 162122 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 380-186 chr2 103216203 103216444 + 2 NA Intergenic L1PA8|LINE|L1 -231894 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 350-18 chr1 155848313 155848506 + 2 NA intron (NM_032292, intron 2 of 20) intron (NM_032292, intron 2 of 20) 8805 NM_032292 54856 Hs.656361 NM_032292 ENSG00000116580 GON4L GON-4|GON4|YARP gon-4 like protein-coding 303-42 chr10 66288979 66289268 + 2 NA intron (NM_001127384, intron 12 of 17) intron (NM_001127384, intron 12 of 17) -636913 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 460-289 chr8 101383738 101384063 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 15007 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 637-56 chr2 4200951 4201367 + 2 NA Intergenic LTR84a|LTR|ERVL 226998 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 190-145 chr5 42947884 42947981 + 2 NA Intergenic Intergenic 45401 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 475-33 chr10 130219636 130220066 + 2 NA Intergenic AluSq2|SINE|Alu 83442 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 399-256 chr5 125072963 125073304 + 2 NA intron (NR_109882, intron 2 of 5) L1MA9|LINE|L1 36302 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 376-199 chr2 138169199 138169391 + 2 NA Intergenic L1PA16|LINE|L1 67411 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 188-131 chr3 78409721 78409884 + 2 NA Intergenic AluJb|SINE|Alu -360839 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 146-43 chr2 125882287 125882418 + 2 NA Intergenic L1M8|LINE|L1 235633 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 581-128 chr5 5777768 5778203 + 2 NA Intergenic Intergenic 355308 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 178-103 chr4 149046639 149046767 + 2 NA Intergenic Intergenic -104325 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 408-283 chr5 165187021 165187313 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 716888 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 182-163 chr7 50138745 50138917 + 2 NA intron (NM_001161834, intron 5 of 8) Charlie9|DNA|hAT-Charlie 42745 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 171-128 chr7 93002752 93002895 + 2 NA Intergenic L1MB8|LINE|L1 115156 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 176-76 chr22 24717557 24717693 + 2 NA Intergenic Intergenic -46876 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 182-116 chr3 189725255 189725399 + 2 NA intron (NM_003722, intron 1 of 13) A-rich|Low_complexity|Low_complexity -64332 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 331-462 chr6 80317126 80317391 + 2 NA intron (NR_134945, intron 10 of 10) MLT1D|LTR|ERVL-MaLR 210587 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 313-264 chr2 98745289 98745530 + 2 NA Intergenic Intergenic -14277 NM_012214 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 338-146 chr13 39242102 39242300 + 2 NA Intergenic (CTTC)n|Simple_repeat|Simple_repeat 203745 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 389-96 chr14 36028169 36028503 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -42091 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 329-482 chr5 165565130 165565359 + 2 NA Intergenic Intergenic 1094965 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 317-551 chrX 135288485 135288681 + 2 NA intron (NM_001185063, intron 3 of 3) intron (NM_001185063, intron 3 of 3) 7456 NM_001185063 7626 Hs.371717 NM_007131 ENSG00000186376 ZNF75D D8C6|ZKSCAN24|ZNF75|ZNF82|ZSCAN28 zinc finger protein 75D protein-coding 395-367 chrX 51653343 51653667 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 29326 NM_001355278 441495 Hs.187774 NM_001355278 ENSG00000283093 CENPVL2 CENPVP2 centromere protein V like 2 protein-coding 284-34 chr10 50521478 50521631 + 2 NA intron (NM_147156, intron 2 of 10) L1MC4|LINE|L1 102402 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 324-558 chr9 19840087 19840336 + 2 NA Intergenic Intergenic -53192 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 324-481 chr7 7852864 7853143 + 2 NA intron (NM_001302350, intron 4 of 4) MER21A|LTR|ERVL 115749 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 364-145 chr15 56275757 56276050 + 2 NA Intergenic L1MEg|LINE|L1 -30821 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 328-17 chr1 101506857 101507037 + 2 NA Intergenic Intergenic 183110 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 339-608 chr9 78586288 78586492 + 2 NA Intergenic L1ME3A|LINE|L1 289265 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 429-268 chr7 7414713 7415000 + 2 NA intron (NM_001037763, intron 27 of 34) L2a|LINE|L2 121017 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 298-367 chr5 67850566 67850817 + 2 NA Intergenic L1MEf|LINE|L1 57478 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 285-278 chr3 111802442 111802639 + 2 NA intron (NM_001185106, intron 4 of 4) intron (NM_001185106, intron 4 of 4) -56640 NM_145753 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 175-71 chr18 71804781 71804927 + 2 NA Intergenic Intergenic -22628 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 360-139 chr15 44213782 44213999 + 2 NA Intergenic Intergenic -18596 NR_104455 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 240-421 chr8 120667396 120667596 + 2 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -93757 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 320-63 chr10 76099181 76099376 + 2 NA intron (NM_001305581, intron 5 of 6) LTR8|LTR|ERV1 316517 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 236-348 chr8 49854611 49854828 + 2 NA Intergenic Intergenic -55077 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 638-137 chr6 92020024 92020487 + 2 NA Intergenic L1MC1|LINE|L1 -329827 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 352-11 chr1 66427842 66428053 + 2 NA Intergenic Intergenic 73412 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 247-397 chr8 53429958 53430109 + 2 NA Intergenic Intergenic 93932 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 371-327 chr5 160809761 160810057 + 2 NA intron (NM_001366652, intron 1 of 24) intron (NM_001366652, intron 1 of 24) 42302 NM_025153 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 300-156 chr17 62880827 62881069 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -63267 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 158-119 chr8 124817933 124818021 + 2 NA Intergenic L1MB2|LINE|L1 -4008 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 201-16 chr1 190586081 190586217 + 2 NA Intergenic Intergenic -38741 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 417-155 chr2 151202693 151202963 + 2 NA Intergenic L2c|LINE|L2 59035 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 550-142 chr22 48147145 48147525 + 2 NA Intergenic Intergenic -127029 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 329-233 chr18 13133609 13133797 + 2 NA Intergenic Intergenic -85057 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 252-377 chr6 102629872 102630114 + 2 NA Intergenic AluJb|SINE|Alu 1231008 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 242-344 chr6 68192796 68192986 + 2 NA Intergenic MIRb|SINE|MIR 137008 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 470-165 chr22 40109859 40110298 + 2 NA intron (NM_001024843, intron 1 of 23) intron (NM_001024843, intron 1 of 23) 65261 NM_001024843 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 899-2 chr11 21972282 21972920 + 2 NA Intergenic L1MA9|LINE|L1 -220484 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 486-11 chr1 110532184 110532586 + 2 NA Intergenic L2b|LINE|L2 -13210 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 321-153 chr13 31203587 31203892 + 2 NA intron (NM_194318, intron 1 of 14) LTR84b|LTR|ERVL 3764 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 429-219 chr4 174756922 174757187 + 2 NA intron (NM_006529, intron 3 of 9) L1M5|LINE|L1 72193 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 228-83 chr13 39792967 39793135 + 2 NA Intergenic L1M7|LINE|L1 -128916 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 218-199 chr21 28466396 28466563 + 2 NA Intergenic Intergenic -72839 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 290-340 chr5 44659724 44659983 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 148940 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 514-240 chr5 145962496 145962878 + 2 NA intron (NM_152550, intron 2 of 9) intron (NM_152550, intron 2 of 9) 26109 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 356-394 chr5 46291318 46291496 + 2 NA Intergenic ALR/Alpha|Satellite|centr -595027 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 115 chr1 34100801 34100866 + 2 NA intron (NM_052896, intron 1 of 69) intron (NM_052896, intron 1 of 69) 64441 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 410-205 chr3 184943336 184943615 + 2 NA intron (NM_001009921, intron 35 of 46) intron (NM_001009921, intron 35 of 46) 130968 NR_146115 23355 Hs.269263 NM_015303 ENSG00000156931 VPS8 KIAA0804 VPS8 subunit of CORVET complex protein-coding 268-35 chr10 26375231 26375429 + 2 NA Intergenic MIRb|SINE|MIR -63011 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 397-141 chr2 20710582 20710882 + 2 NA intron (NR_104233, intron 3 of 4) (TA)n|Simple_repeat|Simple_repeat 43588 NM_182828 151449 Hs.447688 NM_182828 ENSG00000143869 GDF7 BMP12 growth differentiation factor 7 protein-coding 485-64 chr13 54495704 54496136 + 2 NA Intergenic Intergenic -183872 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 462-152 chr2 185162331 185162686 + 2 NA Intergenic L1MA10|LINE|L1 4564 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 252-163 chr18 5525671 5525810 + 2 NA intron (NM_001330557, intron 1 of 21) intron (NM_001330557, intron 1 of 21) 14816 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 301-418 chr7 35764126 35764387 + 2 NA intron (NR_120511, intron 3 of 5) L2c|LINE|L2 36369 NR_120511 101928545 Hs.648103 NR_120511 SEPTIN7-AS1 SEPT7-AS1 SEPT7 antisense RNA 1 (head to head) ncRNA 421-73 chr13 112570940 112571248 + 2 NA intron (NM_006322, intron 1 of 21) Tigger1|DNA|TcMar-Tigger 17059 NM_001286278 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 242-415 chr8 128053482 128053712 + 2 NA intron (NR_003367, intron 5 of 8) intron (NR_003367, intron 5 of 8) 4445 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 184-125 chr4 71838766 71838918 + 2 NA Intergenic Intergenic -33322 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 324-52 chr10 39059896 39060143 + 2 NA Intergenic ALR/Alpha|Satellite|centr 363423 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 340-4 chr1 40611614 40611896 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 53927 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 331-375 chr4 38245226 38245427 + 2 NA Intergenic MIR3|SINE|MIR -121588 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 321-74 chr10 93157583 93157864 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 83830 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 303-43 chr10 67168820 67168989 + 2 NA intron (NM_001127384, intron 7 of 17) L1PA14|LINE|L1 156638 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 271-439 chr8 84092042 84092233 + 2 NA Intergenic L1MA4|LINE|L1 -90650 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 397-235 chr4 133340646 133340870 + 2 NA Intergenic L1MB1|LINE|L1 191464 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 352-139 chr14 47960780 47961017 + 2 NA Intergenic Intergenic -165884 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 246-281 chr3 177286599 177286795 + 2 NA Intergenic Intergenic -7745 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 404-306 chr8 43717312 43717695 + 2 NA Intergenic ALR/Alpha|Satellite|centr 425061 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 189-103 chr2 204358191 204358334 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -187213 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 446-160 chr2 173782473 173782913 + 2 NA Intergenic Intergenic 181187 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 422-161 chr2 200132171 200132580 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -173504 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 302-21 chr1 177436692 177436873 + 2 NA Intergenic L2c|LINE|L2 85196 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 315-153 chr15 71564510 71564680 + 2 NA intron (NM_001286429, intron 1 of 11) MER46C|DNA|TcMar-Tigger 17359 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 231-168 chr2 96481396 96481589 + 2 NA Intergenic L1MB5|LINE|L1 23865 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 320-480 chr6 48703703 48703968 + 2 NA Intergenic MIRb|SINE|MIR -635146 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 728-79 chr6 44536667 44537329 + 2 NA Intergenic Intergenic 14883 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 296-96 chr12 20147127 20147326 + 2 NA Intergenic L2|LINE|L2 -19325 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 303-24 chr1 229232320 229232525 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -38640 NM_001271998 5867 Hs.296169 NM_004578 ENSG00000168118 RAB4A HRES-1|HRES-1/RAB4|HRES1|RAB4 RAB4A, member RAS oncogene family protein-coding 317-386 chr5 45198921 45199103 + 2 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat 390065 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 526-105 chr18 52508413 52508846 + 2 NA intron (NM_005215, intron 1 of 28) L3b|LINE|CR1 168432 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 239-397 chr8 43825338 43825503 + 2 NA Intergenic ALR/Alpha|Satellite|centr 532978 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 381-97 chr13 106486133 106486378 + 2 NA Intergenic Intergenic 48785 NM_004093 1948 Hs.149239 NM_004093 ENSG00000125266 EFNB2 EPLG5|HTKL|Htk-L|LERK5 ephrin B2 protein-coding 267-303 chr4 152194132 152194385 + 2 NA Intergenic MER39|LTR|ERV1 93440 NR_121627 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 200-231 chr5 170130232 170130364 + 2 NA Intergenic L1MEf|LINE|L1 24401 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 319-115 chr12 118631784 118632048 + 2 NA Intergenic L1MB5|LINE|L1 129763 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 133-3 chr1 107502701 107502802 + 2 NA Intergenic Intergenic 185748 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 271-102 chr12 61950013 61950274 + 2 NA intron (NM_178539, intron 1 of 4) L1MB2|LINE|L1 242696 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 297-496 chr8 135727826 135728004 + 2 NA Intergenic Intergenic 270459 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 255-63 chr11 97313850 97314096 + 2 NA Intergenic L2a|LINE|L2 805548 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 373-193 chr2 66232834 66233170 + 2 NA Intergenic MIR|SINE|MIR 125326 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 686-34 chr19 27440768 27441281 + 2 NA Intergenic ALR/Alpha|Satellite|centr -352407 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 520-300 chr8 109657601 109658000 + 2 NA intron (NM_001099743, intron 1 of 7) intron (NM_001099743, intron 1 of 7) -8897 NM_001099750 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 455-47 chr11 31376958 31377360 + 2 NA intron (NM_181706, intron 2 of 4) intron (NM_181706, intron 2 of 4) 7299 NM_181706 120526 Hs.187269 NM_181706 ENSG00000170946 DNAJC24 DPH4|JJJ3|ZCSL3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 271-403 chr7 41600862 41601128 + 2 NA Intergenic Intergenic -92924 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 485-306 chr9 29853573 29853967 + 2 NA Intergenic Intergenic 554684 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 414-106 chr16 26880501 26880831 + 2 NA Intergenic L1ME3Cz|LINE|L1 -186261 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 562-65 chr15 61327792 61328111 + 2 NA Intergenic Intergenic -98649 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 341-498 chr7 62743490 62743690 + 2 NA Intergenic ALR/Alpha|Satellite|centr 560466 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 258-257 chr3 54476808 54477033 + 2 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 162937 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 607-150 chr8 135776742 135777186 + 2 NA Intergenic Intergenic 319508 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 365-124 chr14 75599756 75600097 + 2 NA intron (NM_017791, intron 1 of 9) MER41B|LTR|ERV1 -5614 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 290-281 chr3 68009200 68009444 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 5075 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 254-437 chr9 26148520 26148734 + 2 NA Intergenic Intergenic 81952 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 275-337 chr7 71187357 71187560 + 2 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) 55314 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 231-63 chr12 4242438 4242577 + 2 NA Intergenic Intergenic -31255 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 271-10 chr1 78868232 78868414 + 2 NA Intergenic Intergenic 138407 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 302-263 chr21 42500571 42500848 + 2 NA intron (NM_018964, intron 1 of 20) intron (NM_018964, intron 1 of 20) 1087 NM_018964 54020 Hs.547009 NM_018964 ENSG00000160190 SLC37A1 G3PP solute carrier family 37 member 1 protein-coding 463-31 chr10 15596231 15596525 + 2 NA intron (NM_001291494, intron 20 of 28) MIRb|SINE|MIR 123544 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 232-47 chr10 122631494 122631678 + 2 NA intron (NM_004406, intron 33 of 39) intron (NM_004406, intron 33 of 39) -41296 NM_001364461 112577516 NM_001364461 LOC112577516 - carbohydrate-binding protein AQN-1-like protein-coding 334-61 chr10 75367807 75367985 + 2 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -33632 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 238-143 chr17 79051234 79051430 + 2 NA Intergenic Intergenic 17033 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 149-33 chr15 83951195 83951277 + 2 NA intron (NM_207517, intron 19 of 29) L1MA2|LINE|L1 -128951 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 247-48 chr10 125788010 125788154 + 2 NA TTS (NR_136675) TTS (NR_136675) -12261 NM_147191 118856 Hs.314141 NM_147191 ENSG00000154485 MMP21 HTX7|MMP-21 matrix metallopeptidase 21 protein-coding 442-253 chr6 84293268 84293588 + 2 NA Intergenic HAL1M8|LINE|L1 -65785 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 315-320 chr3 172461590 172461802 + 2 NA Intergenic L2b|LINE|L2 -13240 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 329-505 chr6 123423378 123423579 + 2 NA intron (NM_001251987, intron 12 of 20) intron (NM_001251987, intron 12 of 20) -16126 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 236-282 chr5 36826380 36826542 + 2 NA Intergenic AluJb|SINE|Alu 50233 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 209-113 chr15 88740032 88740193 + 2 NA Intergenic Intergenic -63324 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 269-361 chr6 140628809 140628984 + 2 NA Intergenic Intergenic -54918 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 505-22 chr1 213757639 213758105 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -166877 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 319-442 chr6 6410104 6410266 + 2 NA intron (NR_026970, intron 4 of 7) intron (NR_026970, intron 4 of 7) -89494 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 561-183 chr7 56496885 56497286 + 2 NA non-coding (NR_026929, exon 1 of 1) non-coding (NR_026929, exon 1 of 1) 862 NR_026929 222029 Hs.568108 NR_026929 DKFZp434L192 - uncharacterized protein DKFZp434L192 ncRNA 171-74 chr22 34596173 34596332 + 2 NA Intergenic Intergenic 401664 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 223-171 chr2 182330767 182330931 + 2 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -88786 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 269-172 chr19 30887153 30887353 + 2 NA Intergenic Intergenic -280257 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 261-414 chr9 120135369 120135591 + 2 NA Intergenic Intergenic 109570 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 328-553 chr8 15993293 15993614 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 192819 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 261-277 chr4 48900877 48901072 + 2 NA intron (NM_001014446, intron 2 of 6) intron (NM_001014446, intron 2 of 6) 5800 NM_001014446 132299 Hs.95835 NM_152398 ENSG00000145247 OCIAD2 - OCIA domain containing 2 protein-coding 333-83 chr11 43033919 43034088 + 2 NA Intergenic MER74A|LTR|ERVL 235366 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 305-381 chr4 49097227 49097388 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 110665 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 366-6 chr1 53617214 53617546 + 2 NA intron (NM_001367484, intron 2 of 10) MER20B|DNA|hAT-Charlie 116824 NM_147193 148979 Hs.306691 NM_147193 ENSG00000174332 GLIS1 - GLIS family zinc finger 1 protein-coding 234-65 chr11 106470806 106470968 + 2 NA Intergenic L1ME4c|LINE|L1 219480 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 308-222 chr2 35605240 35605502 + 2 NA Intergenic Intergenic 133966 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 816-52 chr9 76043248 76043952 + 2 NA intron (NR_120409, intron 5 of 19) intron (NR_120409, intron 5 of 19) 152927 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 324-18 chr1 92902235 92902399 + 2 NA intron (NM_001006605, intron 1 of 4) L1MA5|LINE|L1 -25167 NM_001252271 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 479-255 chr8 116437935 116438229 + 2 NA Intergenic Intergenic -113023 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 414-147 chr2 56533204 56533542 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -347603 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 467-106 chr17 58047745 58048139 + 2 NA Intergenic MIR3|SINE|MIR 35262 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 180-118 chr4 87071215 87071383 + 2 NA intron (NM_005935, intron 3 of 19) intron (NM_005935, intron 3 of 19) 64298 NM_005935 4299 Hs.480190 NM_005935 ENSG00000172493 AFF1 AF4|MLLT2|PBM1 AF4/FMR2 family member 1 protein-coding 337-469 chr5 158507185 158507435 + 2 NA Intergenic Intergenic -97537 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 223 chr1 43664597 43664746 + 2 NA intron (NM_014663, intron 5 of 21) intron (NM_014663, intron 5 of 21) 14522 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 196-220 chr6 36811054 36811237 + 2 NA intron (NM_020939, intron 3 of 20) intron (NM_020939, intron 3 of 20) 28299 NM_001314017 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 592-68 chr18 32008595 32009009 + 2 NA Intergenic AluSc|SINE|Alu -10023 NM_017831 54941 Hs.633703 NM_017831 ENSG00000101695 RNF125 TNORS|TRAC-1|TRAC1 ring finger protein 125 protein-coding 554-194 chr7 84567027 84567475 + 2 NA intron (NR_110079, intron 2 of 2) intron (NR_110079, intron 2 of 2) 34775 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 341-530 chr8 103667885 103668116 + 2 NA intron (NM_001348488, intron 3 of 25) MER57A-int|LTR|ERV1 -151220 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 299-467 chr8 127094005 127094241 + 2 NA Intergenic L2c|LINE|L2 -11902 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 226-204 chr20 54442646 54442850 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -32845 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 264-397 chr8 270227 270394 + 2 NA Intergenic Intergenic 37854 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 726-73 chr7 53465342 53465964 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 346278 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 537-252 chr8 84480488 84480876 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 65198 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 361-231 chr2 125073308 125073609 + 2 NA Intergenic L1M4a2|LINE|L1 1044527 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 367-373 chr5 148281642 148282001 + 2 NA intron (NM_001040129, intron 3 of 4) intron (NM_001040129, intron 3 of 4) 13027 NM_001040129 153218 Hs.483771 NM_001040129 ENSG00000214510 SPINK13 HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding 329-406 chr4 42942256 42942470 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 49097 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 285-134 chr15 61423535 61423788 + 2 NA Intergenic L1MC4a|LINE|L1 -194359 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 208-163 chr3 34421538 34421717 + 2 NA Intergenic Intergenic 622997 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 487-176 chr3 439687 440062 + 2 NA Intergenic Intergenic -54079 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 336-509 chr7 31232684 31232884 + 2 NA Intergenic Intergenic 107942 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 214-281 chr6 100180973 100181175 + 2 NA Intergenic L1MD2|LINE|L1 -186836 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 254-96 chr13 59261895 59262132 + 2 NA Intergenic MER33|DNA|hAT-Charlie -750705 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 347-180 chr18 1147097 1147290 + 2 NA Intergenic L2c|LINE|L2 212436 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 461-219 chr5 108630450 108630803 + 2 NA Intergenic Intergenic 97635 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 640-138 chr8 121077303 121077690 + 2 NA Intergenic MER3|DNA|hAT-Charlie -265450 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 234-281 chr4 112873354 112873572 + 2 NA intron (NM_001354271, intron 1 of 42) L1M4|LINE|L1 12476 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 148-56 chr3 94548484 94548607 + 2 NA Intergenic L1PA15|LINE|L1 -389718 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 339-455 chr5 100861266 100861472 + 2 NA intron (NM_005668, intron 3 of 4) intron (NM_005668, intron 3 of 4) 41913 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 608-165 chr9 91063662 91064037 + 2 NA non-coding (NR_033912, exon 4 of 4) non-coding (NR_033912, exon 4 of 4) 11283 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 224-208 chr3 121133473 121133638 + 2 NA intron (NR_145517, intron 7 of 8) L1M3d|LINE|L1 83915 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 114-32 chr20 53145058 53145130 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -40189 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 402-60 chr12 16509426 16509690 + 2 NA Intergenic Intergenic 95821 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 319-155 chr14 97829550 97829860 + 2 NA Intergenic Intergenic -66874 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 522-13 chr1 214060263 214060746 + 2 NA Intergenic Intergenic 71971 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 175-129 chr5 44027840 44027983 + 2 NA Intergenic Intergenic -360821 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 314-499 chr6 40222309 40222521 + 2 NA Intergenic Intergenic 133591 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 198-48 chr11_GL383547v1_alt 57065 57254 + 2 NA NA Intergenic NA NA 368-308 chr3 165545382 165545647 + 2 NA Intergenic MER110|LTR|ERV1 291909 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 303-267 chr21 32247353 32247628 + 2 NA Intergenic Intergenic 31559 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 362-478 chrX 95201433 95201684 + 2 NA Intergenic L1PB1|LINE|L1 -138332 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 366-16 chr1 106183411 106183686 + 2 NA Intergenic Intergenic -155295 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 222-44 chr10 81315409 81315578 + 2 NA Intergenic Intergenic -559701 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 234-266 chr4 33601880 33602092 + 2 NA Intergenic Intergenic 437907 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 230-316 chr5 153534063 153534223 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 41971 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 694-67 chr2 107083273 107083802 + 2 NA Intergenic Intergenic -196428 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 265-91 chr13 68624769 68624932 + 2 NA Intergenic L1MC2|LINE|L1 260475 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 196-158 chr21 24941124 24941265 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 100644 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 376-396 chr8 53738676 53738984 + 2 NA intron (NM_213620, intron 13 of 13) intron (NM_213620, intron 13 of 13) 104212 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 272-417 chr7 46203789 46203941 + 2 NA Intergenic Intergenic -282593 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 196-92 chr16 50905308 50905476 + 2 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 26619 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 567-128 chr4 48721823 48722204 + 2 NA intron (NM_015030, intron 1 of 63) intron (NM_015030, intron 1 of 63) 58286 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 374-63 chr12 13168085 13168422 + 2 NA Intergenic L1MEh|LINE|L1 -28473 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 267-405 chr7 95454080 95454299 + 2 NA Intergenic L1MB8|LINE|L1 -19117 NM_001018161 5445 Hs.514420 NM_000305 ENSG00000105854 PON2 - paraoxonase 2 protein-coding 309-378 chr4 16811967 16812221 + 2 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 86551 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 220-226 chr3 68306556 68306672 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -194023 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 515-83 chr16 65220693 65221112 + 2 NA Intergenic Intergenic -44329 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 372-532 chrX 145215453 145215781 + 2 NA Intergenic Intergenic -31886 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 224-264 chr5 146436611 146436761 + 2 NA Intergenic MamRep605|LTR?|LTR? -10647 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 116-32 chr4 31954519 31954587 + 2 NA Intergenic Intergenic -42826 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 561-76 chr16 6696822 6697316 + 2 NA intron (NM_018723, intron 3 of 15) intron (NM_018723, intron 3 of 15) -76740 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 348-398 chr5 31376407 31376666 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 155557 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 219-76 chr12 100501465 100501641 + 2 NA intron (NR_135146, intron 3 of 10) MIRc|SINE|MIR -1807 NM_001206992 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 326-40 chr1 187780159 187780374 + 2 NA Intergenic Intergenic 336638 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 504-237 chr7 11966682 11967140 + 2 NA Intergenic LTR48B|LTR|ERV1 -134713 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 290-108 chr12 48573825 48573988 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie -3860 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 614-87 chr4 27076371 27076953 + 2 NA Intergenic AluSx|SINE|Alu -140817 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 790-40 chr5 80368150 80368639 + 2 NA Intergenic Intergenic -16428 NR_003665 441089 Hs.568291 NR_003665 CRSP8P - mediator complex subunit 27 pseudogene pseudo 356-378 chr5 6048647 6048943 + 2 NA Intergenic Intergenic 288497 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 238-428 chrX 64362228 64362396 + 2 NA intron (NM_017677, intron 1 of 13) L1MEh|LINE|L1 33140 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 447-229 chr6 67549437 67549806 + 2 NA Intergenic L1MA3|LINE|L1 -505730 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 267-388 chr7 34540179 34540428 + 2 NA intron (NR_033665, intron 2 of 3) L1PA8|LINE|L1 -117915 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 247-128 chr15 58025039 58025251 + 2 NA intron (NM_170696, intron 1 of 11) L1MA4A|LINE|L1 -11122 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 308-244 chr2 124068168 124068334 + 2 NA intron (NM_130773, intron 1 of 23) L1MA2|LINE|L1 42964 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 221-268 chr6 113233050 113233210 + 2 NA Intergenic Intergenic 200317 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 282-348 chr4 99931929 99932177 + 2 NA intron (NM_001031723, intron 1 of 7) L1MB8|LINE|L1 14565 NM_001278311 79982 Hs.577426 NM_024920 ENSG00000164031 DNAJB14 EGNR9427|PRO34683 DnaJ heat shock protein family (Hsp40) member B14 protein-coding 128-45 chr4 101051230 101051315 + 2 NA intron (NM_001130691, intron 10 of 12) intron (NM_001130691, intron 10 of 12) 189600 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 427-66 chr13 103131931 103132303 + 2 NA Intergenic L2a|LINE|L2 -65700 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 182-8 chr1 80710506 80710635 + 2 NA Intergenic L1ME1|LINE|L1 69283 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 463-138 chr2 60343480 60343856 + 2 NA Intergenic L1MEc|LINE|L1 39368 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 395-261 chr5 2067246 2067600 + 2 NA Intergenic Intergenic 180092 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 328-616 chr9 123902243 123902534 + 2 NA intron (NM_001352968, intron 1 of 18) intron (NM_001352968, intron 1 of 18) 27738 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 487-63 chr12 8083086 8083554 + 2 NA intron (NM_015509, intron 1 of 7) MIRc|SINE|MIR 1046 NM_015509 25977 Hs.555927 NM_015509 ENSG00000089818 NECAP1 EIEE21 NECAP endocytosis associated 1 protein-coding 241-76 chr12 2475356 2475526 + 2 NA intron (NM_199460, intron 5 of 49).2 L1MEg|LINE|L1 196779 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 183-92 chr3 35284798 35284947 + 2 NA intron (NR_110817, intron 2 of 3) L1M2|LINE|L1 109151 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 256-326 chr5 99556545 99556696 + 2 NA intron (NR_110562, intron 3 of 3) intron (NR_110562, intron 3 of 3) 22630 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 403-138 chr18 34672479 34672714 + 2 NA intron (NM_001198939, intron 1 of 21) intron (NM_001198939, intron 1 of 21) -37702 NM_032978 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 290-239 chr20 12653399 12653654 + 2 NA Intergenic Intergenic 283437 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 292-162 chr16 35715610 35715795 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -30850 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 218-33 chr10 97950660 97950844 + 2 NA intron (NM_001206528, intron 2 of 14) intron (NM_001206528, intron 2 of 14) -74855 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 375-131 chr14 83137958 83138151 + 2 NA Intergenic Intergenic 495422 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 277-307 chr5 17973795 17973943 + 2 NA Intergenic Intergenic 166595 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 605-15 chr10 80654711 80655096 + 2 NA Intergenic Intergenic 5106 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 368-274 chr22 28444250 28444495 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -15497 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 184-104 chr2 195211155 195211259 + 2 NA Intergenic Intergenic -445751 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 473-190 chr4 44069583 44069989 + 2 NA Intergenic Intergenic 52724 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 325-19 chr1 110125959 110126143 + 2 NA Intergenic Intergenic 13608 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 316-197 chr16 27019300 27019472 + 2 NA Intergenic LTR8|LTR|ERV1 -47541 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 314-242 chr18 52138570 52138831 + 2 NA Intergenic L1M4b|LINE|L1 -201497 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 179-20 chr13 48555880 48556031 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -20060 NM_001352429 1102 Hs.652712 NM_001268 ENSG00000136161 RCBTB2 CHC1L|RLG RCC1 and BTB domain containing protein 2 protein-coding 384-61 chr11 91478769 91479117 + 2 NA Intergenic L1PA15|LINE|L1 -609741 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 743-55 chr3 168663606 168664159 + 2 NA intron (NR_021485, intron 5 of 15) intron (NR_021485, intron 5 of 15) 112028 NR_030294 693136 NR_030294 ENSG00000207717 MIR551B MIRN551B|mir-551b microRNA 551b ncRNA 366-257 chr21 34144032 34144353 + 2 NA Intergenic Intergenic -36485 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 294-472 chr8 104144257 104144491 + 2 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -78961 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 525-143 chr21 17891946 17892349 + 2 NA Intergenic Intergenic -6539 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 338-466 chr6 27925011 27925276 + 2 NA Intergenic Intergenic -12747 NM_033057 81697 Hs.307111 NM_033057 ENSG00000168131 OR2B2 OR2B2Q|OR2B9|OR6-1|dJ193B12.4|hs6M1-10 olfactory receptor family 2 subfamily B member 2 protein-coding 801-46 chr5 124173645 124174125 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 264635 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 313-477 chr6 122583730 122583915 + 2 NA intron (NM_001270393, intron 3 of 7) intron (NM_001270393, intron 3 of 7) -26410 NM_032471 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 255-142 chr16 35259208 35259382 + 2 NA Intergenic Intergenic 63536 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 648-42 chr14 67142316 67142782 + 2 NA intron (NM_001024218, intron 16 of 21) intron (NM_001024218, intron 16 of 21) -46891 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 308-86 chr11 85149444 85149702 + 2 NA intron (NM_001142699, intron 5 of 27) intron (NM_001142699, intron 5 of 27) -226152 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 237-298 chr5 62118643 62118842 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -187420 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 329-575 chr8 83819754 83820003 + 2 NA Intergenic Intergenic -362909 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 114-2 chr10 16437915 16437997 + 2 NA intron (NM_001261837, intron 2 of 4) intron (NM_001261837, intron 2 of 4) 1013 NM_001261838 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 316-10 chr1 65785185 65785466 + 2 NA Intergenic L1MA4|LINE|L1 -7185 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 205-147 chr2 133360525 133360723 + 2 NA intron (NM_207481, intron 3 of 17) L3|LINE|CR1 94429 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 200-258 chr7 87989194 87989330 + 2 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 55011 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 248-240 chr3 36146143 36146288 + 2 NA Intergenic L1M|LINE|L1 -234272 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 501-274 chr8 142088260 142088706 + 2 NA Intergenic Intergenic -87856 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 699-5 chr1 82093422 82093932 + 2 NA Intergenic Intergenic 291224 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 623-103 chr5 36844232 36844646 + 2 NA Intergenic L2a|LINE|L2 32255 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 326-517 chr8 42361409 42361705 + 2 NA intron (NM_002690, intron 10 of 13) intron (NM_002690, intron 10 of 13) 15672 NM_014420 27121 Hs.159311 NM_014420 ENSG00000104371 DKK4 DKK-4 dickkopf WNT signaling pathway inhibitor 4 protein-coding 160-125 chr8 129116063 129116179 + 2 NA Intergenic Intergenic 125119 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 355-367 chr4 61092761 61093026 + 2 NA Intergenic Intergenic -50763 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 699-104 chr8 131369130 131369648 + 2 NA Intergenic Intergenic -328480 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 171-22 chr11 102028576 102028700 + 2 NA Intergenic LTR1F2|LTR|ERV1 -18799 NM_001195005 85016 Hs.98328 NM_032930 ENSG00000137691 CFAP300 C11orf70|CILD38 cilia and flagella associated protein 300 protein-coding 141-17 chr11 42115900 42116016 + 2 NA Intergenic Intergenic -30500 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 358-400 chr6 41019831 41020161 + 2 NA intron (NR_110873, intron 1 of 5) MIRc|SINE|MIR 3284 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 257-80 chr12 1424569 1424793 + 2 NA intron (NR_027948, intron 18 of 19) intron (NR_027948, intron 18 of 19) -75810 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 565-41 chr14 31986045 31986439 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 41389 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 588-136 chr6 72542888 72543253 + 2 NA Intergenic L1MA5|LINE|L1 -78773 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 353-441 chr6 44949641 44949819 + 2 NA intron (NM_181356, intron 11 of 12) L1MEf|LINE|L1 248040 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 218-107 chr15 95936163 95936367 + 2 NA Intergenic Intergenic 191576 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 279-60 chr10 116639028 116639241 + 2 NA intron (NR_103727, intron 11 of 12) L1PA17|LINE|L1 18181 NM_005396 5408 Hs.423598 NM_005396 ENSG00000266200 PNLIPRP2 PLRP2 pancreatic lipase related protein 2 (gene/pseudogene) protein-coding 210-248 chr6 94263366 94263552 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 545156 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 365-317 chr5 46074313 46074660 + 2 NA Intergenic ALR/Alpha|Satellite|centr -378106 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 273-350 chr5 36461518 36461784 + 2 NA Intergenic Intergenic -144704 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 233-77 chr12 43028268 43028453 + 2 NA Intergenic Intergenic -126955 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 300-74 chr11 93932367 93932550 + 2 NA Intergenic L1MC1|LINE|L1 -81840 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 207-191 chr3 87167346 87167523 + 2 NA Intergenic Intergenic 58843 NR_039958 100616161 NR_039958 ENSG00000264119 MIR4795 - microRNA 4795 ncRNA 593-80 chr2 126707044 126707535 + 2 NA Intergenic Intergenic 51131 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 562-107 chr2 82725932 82726482 + 2 NA Intergenic Intergenic -130596 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 776-4 chr1 157460953 157461685 + 2 NA Intergenic HERVL-int|LTR|ERVL 91196 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 357-7 chr1 73640959 73641285 + 2 NA Intergenic Intergenic -33557 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 393-291 chr5 155351601 155351811 + 2 NA Intergenic L1MC1|LINE|L1 337951 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 189-128 chr3 88682023 88682181 + 2 NA Intergenic Intergenic 343646 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 310-280 chr2 227848415 227848575 + 2 NA Intergenic Intergenic -22881 NR_138459 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 392-292 chr6 146516262 146516599 + 2 NA Intergenic Intergenic -27403 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 215-187 chr3 3729880 3730039 + 2 NA intron (NR_149025, intron 5 of 5) intron (NR_149025, intron 5 of 5) -69472 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 198-95 chr18 2109567 2109717 + 2 NA Intergenic Intergenic 461863 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 328-163 chr14 87536887 87537127 + 2 NA Intergenic Intergenic 118287 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 315-398 chr5 142531139 142531296 + 2 NA Intergenic Intergenic 90117 NM_001144892 2246 Hs.483635 NM_000800 ENSG00000113578 FGF1 AFGF|ECGF|ECGF-beta|ECGFA|ECGFB|FGF-1|FGF-alpha|FGFA|GLIO703|HBGF-1|HBGF1 fibroblast growth factor 1 protein-coding 214-167 chr2 128769365 128769552 + 2 NA Intergenic Intergenic -95142 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 451-148 chr3 118847738 118848131 + 2 NA Intergenic HERV17-int|LTR|ERV1 -37101 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 322-301 chr21 24922847 24923079 + 2 NA intron (NR_046198, intron 2 of 3) L1MCa|LINE|L1 82413 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 424-242 chr6 120502101 120502391 + 2 NA Intergenic Intergenic 487067 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 311-96 chr12 21954249 21954526 + 2 NA Intergenic L1ME2|LINE|L1 -17693 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 429-109 chr16 52314104 52314475 + 2 NA Intergenic Intergenic 55725 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 312-199 chr18 35643993 35644231 + 2 NA Intergenic Intergenic -10457 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 304-110 chr12 46080957 46081210 + 2 NA Intergenic L1MC5|LINE|L1 -90509 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 345-333 chr22 33996935 33997229 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -74194 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 291-272 chr22 32973843 32974120 + 2 NA intron (NM_003490, intron 3 of 13) AluSq2|SINE|Alu 32840 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 195-179 chr4 173699320 173699474 + 2 NA Intergenic Intergenic 168939 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 266-27 chr1 227641945 227642172 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 55649 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 286-304 chr4 14688957 14689186 + 2 NA intron (NR_126435, intron 3 of 6) intron (NR_126435, intron 3 of 6) 199098 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 788-40 chr3 193397022 193397660 + 2 NA Intergenic Intergenic -18588 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 362-349 chr5 63513573 63513912 + 2 NA Intergenic Intergenic 448550 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 181-61 chr18 60604781 60604917 + 2 NA Intergenic MER33|DNA|hAT-Charlie -232074 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 788-43 chr5 125615437 125615984 + 2 NA Intergenic (TATATTA)n|Simple_repeat|Simple_repeat 122449 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 366-89 chr11 124264418 124264647 + 2 NA promoter-TSS (NM_001005198) promoter-TSS (NM_001005198) -295 NM_001005198 219865 Hs.722725 NM_001005198 ENSG00000255298 OR8G5 OR11-298|OR8G5P|OR8G6 olfactory receptor family 8 subfamily G member 5 protein-coding 423-205 chr4 125581277 125581581 + 2 NA Intergenic Intergenic 74170 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 169-150 chr9 74182317 74182423 + 2 NA Intergenic L1MB8|LINE|L1 -189161 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 256-219 chr2 151626392 151626572 + 2 NA intron (NM_001271208, intron 70 of 182) intron (NM_001271208, intron 70 of 182) 107994 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 400-362 chr9 26780807 26781065 + 2 NA Intergenic Chap1_Mam|DNA|hAT-Charlie 111866 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 153-2 chr1 38167805 38167904 + 2 NA Intergenic Intergenic 46913 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 337-51 chr10 56755935 56756135 + 2 NA Intergenic L1MC4|LINE|L1 -394762 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 309-135 chr13 103233897 103234148 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -167605 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 372-203 chr19 12191029 12191268 + 2 NA Intergenic Intergenic -3867 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 340-52 chr10 58285330 58285591 + 2 NA intron (NM_018464, intron 2 of 2) intron (NM_018464, intron 2 of 2) 16298 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 250-303 chr4 35710182 35710357 + 2 NA Intergenic L1PA16|LINE|L1 533670 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 455-4 chr1 48890046 48890312 + 2 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -113210 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 473-161 chr21 20536706 20537004 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 266253 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 198-56 chr13 45874185 45874356 + 2 NA Intergenic Intergenic -22517 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 349-51 chr10 33784604 33784790 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -12017 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 340-345 chr22 48767239 48767484 + 2 NA Intergenic L1MEf|LINE|L1 -12934 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 130-38 chr2 59590733 59590840 + 2 NA Intergenic Intergenic 373078 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 343-192 chr17 22527134 22527397 + 2 NA Intergenic Intergenic 4154 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 223-338 chr8 55040600 55040812 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -61322 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 201-236 chr8 55335996 55336155 + 2 NA intron (NM_052898, intron 1 of 2) L1MD2|LINE|L1 119246 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 299-226 chr2 141625588 141625764 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 506025 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 485-262 chr7 36912193 36912560 + 2 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) 7056 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 443-313 chrX 73867851 73868193 + 2 NA Intergenic L1M3e|LINE|L1 -15269 NR_001564 7503 Hs.529901 NR_001564 ENSG00000229807 XIST DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66 X inactive specific transcript ncRNA 570-75 chr16 31924298 31924734 + 2 NA Intergenic Intergenic 50709 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 340-511 chr7 82670375 82670597 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -226530 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 217-391 chr9 82727285 82727473 + 2 NA Intergenic Intergenic 335763 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 227-84 chr12 77704536 77704709 + 2 NA Intergenic Intergenic -126272 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 533-131 chr3 42365508 42365961 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 44876 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 529-211 chr8 43582994 43583488 + 2 NA Intergenic ALR/Alpha|Satellite|centr 290799 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 290-491 chrX 52402542 52402745 + 2 NA Intergenic Intergenic 33622 NM_130777 9502 Hs.409726 NM_130777 ENSG00000155622 XAGE2 CT12.2|GAGED3|XAGE-2|XAGE2B X antigen family member 2 protein-coding 448-144 chr21 34645854 34646282 + 2 NA Intergenic AluSx|SINE|Alu -22926 NM_001317009 54102 Hs.473695 NM_053277 ENSG00000159212 CLIC6 CLIC1L chloride intracellular channel 6 protein-coding 306-230 chr2 46105647 46105890 + 2 NA intron (NM_005400, intron 11 of 14) Tigger2|DNA|TcMar-Tigger -191639 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 174-145 chr8 88847056 88847170 + 2 NA Intergenic Intergenic -519630 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 276-149 chr14 61084802 61085067 + 2 NA Intergenic Intergenic -103244 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 325-124 chr12 22583905 22584153 + 2 NA Intergenic MER41C|LTR|ERV1 -39483 NM_001286173 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 344-30 chr1 203093107 203093325 + 2 NA Intergenic Intergenic -7204 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 373-43 chr10 15534300 15534633 + 2 NA intron (NM_001291494, intron 26 of 28) intron (NM_001291494, intron 26 of 28) -163177 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 196-204 chr5 38611639 38611765 + 2 NA intron (NR_103554, intron 2 of 8) (TA)n|Simple_repeat|Simple_repeat -16297 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 512-260 chr7 82999037 82999489 + 2 NA intron (NM_033026, intron 3 of 24) A-rich|Low_complexity|Low_complexity 163621 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 444-78 chr15 77292436 77292809 + 2 NA intron (NM_024776, intron 1 of 7) Tigger17a|DNA|TcMar-Tigger -67218 NR_026813 81698 Hs.656938 NM_030944 LINC00597 C15orf5 long intergenic non-protein coding RNA 597 ncRNA 318-343 chr3 7844733 7844949 + 2 NA Intergenic Intergenic 171466 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 249-39 chr10 26386050 26386237 + 2 NA Intergenic Intergenic -52198 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 265-157 chr18 53360851 53361076 + 2 NA intron (NM_005215, intron 15 of 28) MLT1D|LTR|ERVL-MaLR 123862 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 363-134 chr14 46441503 46441776 + 2 NA intron (NR_102701, intron 4 of 5) L1P3|LINE|L1 -29720 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 495-28 chr10 76652636 76652905 + 2 NA Intergenic L1MB5|LINE|L1 -235274 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 209-55 chr11 23584053 23584212 + 2 NA Intergenic Intergenic -164942 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 384-414 chrX 132168892 132169234 + 2 NA Intergenic MIRb|SINE|MIR -41041 NM_194277 90167 Hs.170776 NM_194277 ENSG00000165694 FRMD7 NYS|NYS1|XIPAN FERM domain containing 7 protein-coding 341-232 chr2 23088040 23088297 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -297011 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 227-402 chr9 107824286 107824447 + 2 NA Intergenic Intergenic -334597 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 548-74 chr14 63209450 63209877 + 2 NA intron (NM_020663, intron 1 of 4) intron (NM_020663, intron 1 of 4) 5220 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 397-232 chr4 99790409 99790783 + 2 NA Intergenic L2c|LINE|L2 -26231 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 392-184 chr21 29177534 29177804 + 2 NA Intergenic Intergenic -15825 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 325-383 chr4 31406459 31406669 + 2 NA Intergenic Intergenic -99980 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 392-195 chr22 49074640 49074855 + 2 NA Intergenic MLT2B1|LTR|ERVL 207977 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 300-230 chr20 9607231 9607511 + 2 NA intron (NM_020341, intron 4 of 10) L1MC4|LINE|L1 -92373 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 294-507 chr9 107381208 107381407 + 2 NA Intergenic AluJr|SINE|Alu 85278 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 175-66 chr18 8593441 8593574 + 2 NA Intergenic Intergenic -15938 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 276-435 chr7 106648021 106648244 + 2 NA Intergenic Intergenic 13026 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 322-580 chrX 65863876 65864100 + 2 NA Intergenic Intergenic -154882 NR_029637 407008 NR_029637 ENSG00000284567 MIR223 MIRN223|miRNA223|mir-223 microRNA 223 ncRNA 325-109 chr11 100468228 100468478 + 2 NA Intergenic Intergenic -218935 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 249-72 chr11 32549613 32549789 + 2 NA Intergenic Intergenic -34130 NM_001307929 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 460-156 chr2 184011626 184012024 + 2 NA Intergenic LTR85a|LTR|Gypsy? -367150 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 343-422 chr5 35982178 35982395 + 2 NA intron (NM_001171873, intron 3 of 5) MSTA-int|LTR|ERVL-MaLR 9104 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 451-14 chr1 178848397 178848770 + 2 NA TTS (NM_004673) TTS (NM_004673) 22494 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 347-510 chr8 80701163 80701385 + 2 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 173194 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 439-252 chr6 153171100 153171478 + 2 NA Intergenic Intergenic -40007 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 527-47 chr11 57886120 57886501 + 2 NA Intergenic AluSz|SINE|Alu 124508 NM_001206884 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 417-93 chr15 62106534 62106890 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 39735 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 419-231 chr5 53547057 53547307 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -13457 NM_001318051 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 584-180 chr9 102155745 102156320 + 2 NA Intergenic L1MA9|LINE|L1 -363605 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 269-174 chr19 52359044 52359261 + 2 NA intron (NM_001161425, intron 5 of 5) L1MB2|LINE|L1 -10771 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 757-65 chr9 137944279 137944769 + 2 NA non-coding (NR_132977, exon 3 of 3) non-coding (NR_132977, exon 3 of 3) 2536 NR_132977 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 382-262 chr3 45739414 45739693 + 2 NA intron (NM_001319071, intron 18 of 19) intron (NM_001319071, intron 18 of 19) 50157 NM_014016 22908 Hs.156509 NM_014016 ENSG00000211456 SACM1L SAC1 SAC1 like phosphatidylinositide phosphatase protein-coding 325-274 chr2 116161232 116161398 + 2 NA Intergenic PRIMA41-int|LTR|ERV1 817500 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 533-94 chr2 30064536 30064908 + 2 NA Intergenic L1MA2|LINE|L1 -82285 NM_001127401 51646 Hs.515890 NM_016061 ENSG00000119801 YPEL5 CGI-127 yippee like 5 protein-coding 783-72 chr7 70010328 70011027 + 2 NA intron (NM_015570, intron 2 of 18) MLT1I|LTR|ERVL-MaLR 412202 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 366-194 chr2 52623337 52623660 + 2 NA Intergenic Intergenic 79117 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 590-115 chr3 174340627 174341166 + 2 NA Intergenic Intergenic -420100 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 362-432 chr8 61012635 61012932 + 2 NA Intergenic Intergenic -45035 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 307-465 chr7 134588661 134588891 + 2 NA Intergenic HERV17-int|LTR|ERV1 39666 NR_160302 441282 Hs.729418 NM_001080538 ENSG00000227471 AKR1B15 AKR1B10L|AKR1B10L, AK1R1B7|AKR1R1B7 aldo-keto reductase family 1 member B15 protein-coding 237-96 chr14 30741187 30741335 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 118942 NM_016106 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 266-93 chr12 91964103 91964310 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 177507 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 166-89 chr5 16402465 16402606 + 2 NA intron (NR_104625, intron 7 of 8) Tigger1|DNA|TcMar-Tigger 38567 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 352-141 chr14 51335633 51335836 + 2 NA intron (NR_038358, intron 1 of 4) intron (NR_038358, intron 1 of 4) 2341 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 200-93 chr16 12183253 12183402 + 2 NA intron (NM_032167, intron 13 of 20) L1MC5|LINE|L1 206593 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 363-49 chr10 53395908 53396131 + 2 NA Intergenic LTR4|LTR|ERV1 -624319 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 315-513 chr9 80543107 80543370 + 2 NA Intergenic Intergenic 568215 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 294-272 chr21 38374058 38374240 + 2 NA intron (NM_001243432, intron 11 of 11) intron (NM_001243432, intron 11 of 11) -28073 NR_110545 102724678 Hs.635675 NR_110545 LINC01423 - long intergenic non-protein coding RNA 1423 ncRNA 113-43 chr6 121723027 121723104 + 2 NA Intergenic Intergenic 287419 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 208-2 chr1 19002262 19002433 + 2 NA Intergenic MLT2F|LTR|ERVL -45671 NM_001136265 126917 Hs.466625 NM_001136265 ENSG00000169991 IFFO2 - intermediate filament family orphan 2 protein-coding 141-11 chr10 54417281 54417416 + 2 NA intron (NM_001142773, intron 2 of 31) intron (NM_001142773, intron 2 of 31) -68882 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 246-326 chr5 51878866 51879046 + 2 NA Intergenic L2a|LINE|L2 -129075 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 132-79 chr7 66906901 66906992 + 2 NA TTS (NR_136637) TTS (NR_136637) 2826 NR_136637 644794 Hs.552124 NR_136637 LINC02604 lncHERG long intergenic non-protein coding RNA 2604 ncRNA 306-548 chr9 85028715 85028994 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 322953 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 430-166 chr2 172976551 172976804 + 2 NA intron (NM_001282901, intron 4 of 24) intron (NM_001282901, intron 4 of 24) 48472 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 355-357 chr4 38623712 38623997 + 2 NA intron (NR_026804, intron 6 of 7) intron (NR_026804, intron 6 of 7) -40345 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 462-230 chr5 97200520 97200869 + 2 NA Intergenic L1M4|LINE|L1 -17447 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 257-55 chr11 1493218 1493466 + 2 NA Intergenic AluSz|SINE|Alu -6563 NM_001172223 81532 Hs.370360 NM_053005 ENSG00000182208 MOB2 HCCA2 MOB kinase activator 2 protein-coding 640-107 chr5 23363473 23363988 + 2 NA Intergenic Intergenic -143879 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 333-72 chr10 111488500 111488707 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 374312 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 300-258 chr22 26934848 26935018 + 2 NA Intergenic AluSx|SINE|Alu 31641 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 336-457 chr5 88151807 88152062 + 2 NA Intergenic HAL1ME|LINE|L1 116911 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 313-192 chr16 82813354 82813564 + 2 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 40140 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 214-39 chr10 64283182 64283389 + 2 NA Intergenic L1PB4|LINE|L1 -542243 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 423-321 chrX 45750472 45750844 + 2 NA Intergenic Intergenic -3534 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 273-299 chr3 96790133 96790330 + 2 NA Intergenic L1MA4A|LINE|L1 -24363 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 238-255 chr4 30686633 30686812 + 2 NA Intergenic Intergenic -33647 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 284-86 chr12 46050406 46050584 + 2 NA Intergenic L1PA16|LINE|L1 -59921 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 253-174 chr2 22234461 22234684 + 2 NA Intergenic Intergenic -301907 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 316-46 chr1 231889118 231889410 + 2 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -36570 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 754-15 chr12 77542147 77542872 + 2 NA Intergenic L1PB4|LINE|L1 -288385 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 204-127 chr18 70889897 70890054 + 2 NA Intergenic Intergenic -239021 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 148-12 chr11 40753645 40753755 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -460570 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 181-48 chr15 64454187 64454297 + 2 NA intron (NM_001321924, intron 12 of 12) intron (NM_001321924, intron 12 of 12) -45178 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 275-18 chr1 180030498 180030699 + 2 NA intron (NM_014810, intron 14 of 37) MIRc|SINE|MIR 75788 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 462-306 chrX 134055014 134055440 + 2 NA Intergenic Intergenic -69581 NM_004484 2719 Hs.644108 NM_004484 ENSG00000147257 GPC3 DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1 glypican 3 protein-coding 272-427 chr7 84815531 84815669 + 2 NA Intergenic Intergenic 283124 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 388-28 chr1 195630174 195630517 + 2 NA Intergenic L1MA7|LINE|L1 458370 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 348-9 chr1 73266018 73266353 + 2 NA Intergenic L1M3f|LINE|L1 -39985 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 548-166 chr4 80854331 80854710 + 2 NA intron (NM_001206997, intron 4 of 6) L2a|LINE|L2 -176188 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 401-57 chr11 102592176 102592426 + 2 NA intron (NM_004771, intron 8 of 9) intron (NM_004771, intron 8 of 9) 33031 NM_004771 9313 Hs.591946 NM_004771 ENSG00000137674 MMP20 AI2A2|MMP-20 matrix metallopeptidase 20 protein-coding 513-127 chr2 51962668 51963029 + 2 NA intron (NR_135237, intron 7 of 10) MIR|SINE|MIR -407800 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 235-84 chr12 62493872 62494091 + 2 NA exon (NM_001278471, exon 3 of 34) exon (NM_001278471, exon 3 of 34) 27155 NM_015026 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 340-40 chr1 247542470 247542746 + 2 NA intron (NM_001281834, intron 3 of 6) intron (NM_001281834, intron 3 of 6) -6526 NM_145278 148823 Hs.732113 NM_145278 ENSG00000169224 GCSAML C1orf150 germinal center associated signaling and motility like protein-coding 332-211 chr18 12804393 12804632 + 2 NA intron (NM_080423, intron 7 of 8) L1MA6|LINE|L1 36450 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 408-43 chr10 60903950 60904324 + 2 NA intron (NM_001350906, intron 5 of 12) AluSz|SINE|Alu 40048 NM_001350904 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 741-68 chr8 28173715 28174193 + 2 NA intron (NM_018091, intron 14 of 14) L1MB4|LINE|L1 80815 NM_001284220 55140 Hs.491336 NM_018091 ENSG00000134014 ELP3 KAT9 elongator acetyltransferase complex subunit 3 protein-coding 258-368 chr7 62771644 62771813 + 2 NA Intergenic ALR/Alpha|Satellite|centr 532328 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 251-205 chr20 53010721 53010922 + 2 NA intron (NM_173485, intron 1 of 2) (TATTAT)n|Simple_repeat|Simple_repeat 38463 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 243-361 chr5 66476531 66476747 + 2 NA Intergenic Intergenic 34965 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 280-409 chr8 83044811 83045043 + 2 NA Intergenic Intergenic 132823 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 688-8 chr1 187128854 187129281 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 36225 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 219-202 chr20 19113102 19113287 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -99448 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 361-81 chr11 91741169 91741411 + 2 NA Intergenic MER106B|DNA|hAT-Charlie -483744 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 697-68 chr7 46431600 46432229 + 2 NA Intergenic L1MDa|LINE|L1 265208 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 580-54 chr15 54171137 54171702 + 2 NA intron (NM_001329919, intron 4 of 31) L1MA3|LINE|L1 158771 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 409-69 chr14 25180313 25180535 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -130127 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 241-360 chr7 24321001 24321142 + 2 NA Intergenic Intergenic 36881 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 333-487 chr5 168059435 168059725 + 2 NA intron (NM_001368145, intron 5 of 26) intron (NM_001368145, intron 5 of 26) -106265 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 209-11 chr1 110746265 110746442 + 2 NA Intergenic Intergenic -71413 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 327-449 chr7 11103637 11103836 + 2 NA non-coding (NR_033435, exon 16 of 16) non-coding (NR_033435, exon 16 of 16) 129864 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 358-58 chr10 126613188 126613393 + 2 NA intron (NM_001350922, intron 2 of 8) AluJr|SINE|Alu 57220 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 326-69 chr10 64022242 64022417 + 2 NA Intergenic Intergenic -500439 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 330-340 chr3 8425907 8426072 + 2 NA intron (NR_033378, intron 3 of 3) MIR|SINE|MIR 75669 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 278-319 chr4 119125488 119125705 + 2 NA Intergenic L2a|LINE|L2 -10188 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 328-393 chr4 41423626 41423948 + 2 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 62980 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 375-224 chr2 158072191 158072517 + 2 NA intron (NM_001135098, intron 2 of 8) L1MA2|LINE|L1 -29516 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 232-35 chr10 63879519 63879684 + 2 NA Intergenic L1MA9|LINE|L1 -357711 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 359-64 chr10 85303074 85303315 + 2 NA Intergenic Intergenic -104256 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 342-359 chr4 61133731 61134035 + 2 NA Intergenic Intergenic -9773 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 245-233 chr3 96411569 96411744 + 2 NA Intergenic Intergenic 51692 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 508-99 chr2 63256348 63256735 + 2 NA intron (NR_148705, intron 13 of 16) L1ME3A|LINE|L1 -136999 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 389 chr1 13634654 13634938 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 49336 NM_001006624 10630 Hs.468675 NM_006474 ENSG00000162493 PDPN AGGRUS|GP36|GP40|Gp38|HT1A-1|OTS8|PA2.26|T1A|T1A-2|T1A2|TI1A podoplanin protein-coding 246-357 chr6 159388179 159388376 + 2 NA intron (NR_125873, intron 1 of 2) L1M4b|LINE|L1 4746 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 523-218 chr5 46073000 46073336 + 2 NA Intergenic ALR/Alpha|Satellite|centr -376788 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 495-207 chr5 144602988 144603328 + 2 NA Intergenic LTR78|LTR|ERV1 397767 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 303-510 chrX 107192109 107192392 + 2 NA intron (NR_033676, intron 1 of 6) intron (NR_033676, intron 1 of 6) 14183 NM_017681 54830 Hs.163629 NM_017681 ENSG00000198088 NUP62CL - nucleoporin 62 C-terminal like protein-coding 375-404 chr8 68677742 68678009 + 2 NA intron (NR_146187, intron 8 of 13) L1MA3|LINE|L1 -346384 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 402-371 chrX 143110535 143110877 + 2 NA Intergenic MER81|DNA|hAT-Blackjack 84778 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 748-74 chr5 114633654 114634308 + 2 NA intron (NR_130785, intron 3 of 12) intron (NR_130785, intron 3 of 12) 57940 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 573-15 chr1 209182878 209183364 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -142335 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 258-395 chr8 91706669 91706910 + 2 NA Intergenic L1M4|LINE|L1 310891 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 330-199 chr16 83517711 83517969 + 2 NA intron (NM_001220489, intron 6 of 12) MIR|SINE|MIR 9494 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 410-32 chr10 48831969 48832329 + 2 NA intron (NM_020945, intron 38 of 61) intron (NM_020945, intron 38 of 61) 82086 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 349-476 chr7 65001856 65002116 + 2 NA intron (NM_001007253, intron 1 of 1) MER21C|LTR|ERVL 4701 NR_145414 2086 Hs.250693 NM_001007253 ENSG00000213462 ERV3-1 ERV-R|ERV3|ERVR|HERV-R|HERVR|envR endogenous retrovirus group 3 member 1, envelope protein-coding 236-86 chr12 47312138 47312293 + 2 NA Intergenic Zaphod3|DNA|hAT-Tip100 -4816 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 288-40 chr10 15415434 15415619 + 2 NA Intergenic Intergenic -44237 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 350-15 chr1 113250619 113250886 + 2 NA Intergenic L1MD3|LINE|L1 -44499 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 221-12 chr1 101205067 101205218 + 2 NA Intergenic MIRb|SINE|MIR 31386 NR_104626 101928370 Hs.534209 NR_104626 LOC101928370 - uncharacterized LOC101928370 ncRNA 219-250 chr3 196520705 196520824 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -5418 NM_001077657 255798 Hs.631933 NM_001077657 ENSG00000214097 SMCO1 C3orf43 single-pass membrane protein with coiled-coil domains 1 protein-coding 434-121 chr18 46060577 46060794 + 2 NA intron (NM_024430, intron 1 of 14) intron (NM_024430, intron 1 of 14) 11575 NM_024430 9050 Hs.567384 NM_024430 ENSG00000152229 PSTPIP2 MAYP proline-serine-threonine phosphatase interacting protein 2 protein-coding 545-184 chr5 63274808 63275186 + 2 NA Intergenic Intergenic 687295 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 707-95 chr7 46898985 46899408 + 2 NA Intergenic Intergenic -202074 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 406-144 chr2 54762058 54762375 + 2 NA intron (NM_001039753, intron 1 of 40) L1MC4|LINE|L1 37204 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 262-422 chr8 62558918 62559152 + 2 NA intron (NM_001304533, intron 1 of 6) L1MDa|LINE|L1 310181 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 261-331 chr6 24735355 24735491 + 2 NA Intergenic L1ME2z|LINE|L1 -16269 NM_030939 81688 Hs.744857 NM_030939 ENSG00000112308 C6orf62 Nbla00237|XTP12|dJ30M3.2 chromosome 6 open reading frame 62 protein-coding 430-94 chr15 59767493 59767847 + 2 NA Intergenic Charlie14a|DNA|hAT-Charlie -78350 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 499-247 chr7 64925425 64925856 + 2 NA intron (NR_003099, intron 4 of 4) AluSg|SINE|Alu 22398 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 207-170 chr21 25625474 25625648 + 2 NA Intergenic AluSz|SINE|Alu -13697 NR_072999 58494 Hs.517227 NM_021219 ENSG00000154721 JAM2 C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM junctional adhesion molecule 2 protein-coding 412-269 chr5 172522502 172522752 + 2 NA Intergenic Intergenic 36387 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 278-49 chr11 29156680 29156875 + 2 NA Intergenic Intergenic -437636 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 362-417 chr7 125684275 125684602 + 2 NA Intergenic L1MA3|LINE|L1 -420147 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 432-239 chr6 12564585 12564953 + 2 NA Intergenic L1PB1|LINE|L1 20635 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 273-471 chr9 79557121 79557280 + 2 NA Intergenic Intergenic -14573 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 212-267 chr5 145342859 145343031 + 2 NA Intergenic L1M2|LINE|L1 492397 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 448-32 chr10 45482014 45482405 + 2 NA intron (NM_001282866, intron 3 of 7) L1MA4A|LINE|L1 -29088 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 366-145 chr15 96199943 96200205 + 2 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -72233 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 364-465 chr9 14359145 14359464 + 2 NA intron (NM_001369458, intron 1 of 11) MLT1D|LTR|ERVL-MaLR -36917 NM_001369472 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 139-84 chr7 19306164 19306262 + 2 NA Intergenic L1MA6|LINE|L1 -160792 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 263-176 chr18 73730315 73730559 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 405496 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 215-25 chr10 19888624 19888783 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 72271 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 369-40 chr10 57787592 57787881 + 2 NA Intergenic Intergenic 480158 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 221-247 chr5 102700884 102701082 + 2 NA Intergenic Intergenic -29519 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 242-293 chr5 19841819 19842052 + 2 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 44337 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 256-126 chr14 70863548 70863751 + 2 NA Intergenic MER57A-int|LTR|ERV1 -43810 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 336-410 chr4 56095845 56096042 + 2 NA Intergenic L2a|LINE|L2 -74252 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 347-118 chr14 28300523 28300760 + 2 NA Intergenic Intergenic 464678 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 333-220 chr2 7898487 7898712 + 2 NA intron (NR_110256, intron 1 of 5) intron (NR_110256, intron 1 of 5) 1056 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 391-190 chr2 181084728 181085104 + 2 NA Intergenic Intergenic -38921 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 235-153 chr19 47588534 47588694 + 2 NA Intergenic AluSx1|SINE|Alu -15466 NM_001277075 84215 Hs.14161 NM_032255 ENSG00000118156 ZNF541 - zinc finger protein 541 protein-coding 147-89 chr9 83388155 83388243 + 2 NA intron (NM_001244960, intron 2 of 13) intron (NM_001244960, intron 2 of 13) -56238 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 269-111 chr14 40554448 40554601 + 2 NA Intergenic Intergenic -400187 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 343-25 chr1 113346967 113347170 + 2 NA Intergenic Intergenic -43447 NM_001142782 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 343-174 chr16 14340323 14340600 + 2 NA Intergenic AluJr|SINE|Alu 29805 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 492-240 chr7 37171017 37171341 + 2 NA intron (NM_001206480, intron 13 of 21) Kanga1b|DNA|TcMar-Tc2 173383 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 325-160 chr14 38535810 38535981 + 2 NA Intergenic Intergenic -279802 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 238-226 chr3 3429641 3429857 + 2 NA Intergenic L2c|LINE|L2 -250032 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 316-601 chrX 55038778 55039021 + 2 NA Intergenic MER65C|LTR|ERV1 -7922 NM_001037968 212 Hs.522666 NM_000032 ENSG00000158578 ALAS2 ALAS-E|ALASE|ANH1|ASB|SIDBA1|XLDPP|XLEPP|XLSA 5'-aminolevulinate synthase 2 protein-coding 343-220 chr2 5899737 5899914 + 2 NA Intergenic Intergenic -32862 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 295-297 chr3 76285184 76285466 + 2 NA Intergenic Intergenic -499776 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 348-174 chr16 78409645 78409825 + 2 NA intron (NM_001291997, intron 5 of 7) MLT1D|LTR|ERVL-MaLR 310081 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 169-66 chr20 59049892 59050008 + 2 NA Intergenic Intergenic -7104 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 768-13 chr12 19594712 19595335 + 2 NA Intergenic Intergenic 154424 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 283-460 chr9 35470454 35470615 + 2 NA intron (NR_003581, intron 12 of 17) intron (NR_003581, intron 12 of 17) -19577 NM_014806 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 256-422 chr8 87523591 87523796 + 2 NA Intergenic Intergenic 350322 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 362-284 chr3 175066948 175067240 + 2 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 48148 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 273-153 chr16 25311829 25311976 + 2 NA Intergenic L1M2|LINE|L1 -54057 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 383-127 chr15 58656494 58656727 + 2 NA intron (NM_001320570, intron 5 of 14) L1MA2|LINE|L1 36997 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 340-165 chr15 25163266 25163572 + 2 NA intron (NR_146177, intron 61 of 147) intron (NR_146177, intron 61 of 147) -7304 NR_001291 338433 NR_001291 ENSG00000201831 SNORD115-1 HBII-52-1|RNHBII52 small nucleolar RNA, C/D box 115-1 snoRNA 342-194 chr17 69624302 69624624 + 2 NA intron (NR_109972, intron 2 of 4) intron (NR_109972, intron 2 of 4) 30476 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 135-66 chr7 48817686 48817782 + 2 NA Intergenic Intergenic -106813 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 319-332 chr3 76212677 76212849 + 2 NA Intergenic Intergenic -427214 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 299-138 chr14 63039508 63039803 + 2 NA intron (NM_139318, intron 1 of 10) intron (NM_139318, intron 1 of 10) 5803 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 288-88 chr12 124271569 124271832 + 2 NA intron (NM_001347902, intron 3 of 4) MLT1C|LTR|ERVL-MaLR -17464 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 250-439 chr8 109051092 109051291 + 2 NA Intergenic Intergenic -35437 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 483-192 chr4 167433715 167434165 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -199350 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 270-353 chr7 30237407 30237585 + 2 NA Intergenic Intergenic -47101 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 345-440 chr5 133518274 133518570 + 2 NA intron (NM_015082, intron 3 of 15) L1M6|LINE|L1 -90716 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 494-285 chr8 65386806 65387169 + 2 NA Intergenic Intergenic 175679 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 205-250 chr6 144238164 144238334 + 2 NA Intergenic L1MB8|LINE|L1 -53488 NM_007124 7402 Hs.133135 NM_007124 ENSG00000152818 UTRN DMDL|DRP|DRP1 utrophin protein-coding 252-337 chr5 90100699 90100881 + 2 NA Intergenic Intergenic -84070 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 307-333 chr4 34924468 34924740 + 2 NA Intergenic Intergenic -654857 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 490-184 chr3 103417006 103417368 + 2 NA Intergenic Intergenic 106929 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 324-447 chr5 180155576 180155868 + 2 NA intron (NM_175062, intron 1 of 13) intron (NM_175062, intron 1 of 13) 53489 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 321-351 chr22 34501315 34501580 + 2 NA Intergenic Intergenic 496469 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 275-328 chr7 41112414 41112589 + 2 NA non-coding (NR_110832, exon 3 of 6) non-coding (NR_110832, exon 3 of 6) 10897 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 270-48 chr10 131783314 131783554 + 2 NA intron (NR_038365, intron 2 of 4) AluSz|SINE|Alu 6765 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 646-52 chr19 57088726 57089151 + 2 NA Intergenic Intergenic -31203 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 275-186 chr2 49520392 49520570 + 2 NA Intergenic L1PA7|LINE|L1 -365954 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 372-321 chr3 26463443 26463793 + 2 NA Intergenic Intergenic -159188 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 340-17 chr1 106013464 106013741 + 2 NA intron (NR_146609, intron 3 of 5) MSTA-int|LTR|ERVL-MaLR 14651 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 316-346 chr3 59957432 59957671 + 2 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 123358 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 354-425 chr7 36975357 36975630 + 2 NA intron (NM_001206480, intron 16 of 21) Charlie2b|DNA|hAT-Charlie 9619 NM_001039459 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 344-470 chr7 141275292 141275492 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) 201328 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 311-71 chr10 107974516 107974707 + 2 NA intron (NR_125760, intron 4 of 4) THE1A-int|LTR|ERVL-MaLR 94682 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 217-386 chr9 24294390 24294513 + 2 NA Intergenic Intergenic 251225 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 267-150 chr18 2764924 2765117 + 2 NA intron (NM_015295, intron 37 of 47) intron (NM_015295, intron 37 of 47) -81986 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 614-141 chr8 137301830 137302311 + 2 NA Intergenic Intergenic 111518 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 321-334 chr20 43228200 43228389 + 2 NA Intergenic L1MC4a|LINE|L1 -38388 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 614-41 chr17 48500026 48500523 + 2 NA Intergenic Intergenic 30737 NM_002144 3211 Hs.99992 NM_002144 ENSG00000120094 HOXB1 HCFP3|HOX2|HOX2I|Hox-2.9 homeobox B1 protein-coding 236-65 chr11 27894332 27894502 + 2 NA Intergenic L1ME3F|LINE|L1 -162398 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 570-193 chr8 47052528 47052982 + 2 NA Intergenic L1PA10|LINE|L1 -136552 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 182-66 chr16 77042475 77042625 + 2 NA Intergenic L1MC5a|LINE|L1 -148640 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 543-33 chr10 43516193 43516537 + 2 NA Intergenic HERVL-int|LTR|ERVL 52094 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 217-256 chr4 60036769 60036947 + 2 NA Intergenic Intergenic -885761 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 435-130 chr2 164520507 164520807 + 2 NA intron (NM_004490, intron 6 of 13) L1PB1|LINE|L1 47838 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 625 chr1 5790254 5790825 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 72202 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 186-96 chr2 228942193 228942377 + 2 NA Intergenic Intergenic 289807 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 358-415 chr6 127483932 127484225 + 2 NA intron (NM_001012279, intron 4 of 11) intron (NM_001012279, intron 4 of 11) -24689 NM_014702 9729 Hs.319247 NM_014702 ENSG00000189367 KIAA0408 - KIAA0408 protein-coding 356-275 chr2 215173095 215173314 + 2 NA Intergenic Intergenic -34578 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 292-111 chr12 85947063 85947248 + 2 NA Intergenic Intergenic 72860 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 308-364 chr4 181578180 181578434 + 2 NA Intergenic HAL1ME|LINE|L1 251666 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 225-28 chr10 31452229 31452386 + 2 NA intron (NM_001323646, intron 4 of 11) intron (NM_001323646, intron 4 of 11) -52552 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 216-310 chr6 108937429 108937611 + 2 NA intron (NM_001286609, intron 11 of 16) MIR3|SINE|MIR -13417 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 693-4 chr1 87854993 87855438 + 2 NA Intergenic Intergenic -483560 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 363-321 chr4 46690263 46690585 + 2 NA Intergenic Intergenic 218821 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 401-106 chr15 88443704 88444047 + 2 NA Intergenic Intergenic 23513 NM_022163 26589 Hs.534261 NM_022163 ENSG00000259494 MRPL46 C15orf4|LIECG2|P2ECSL mitochondrial ribosomal protein L46 protein-coding 194-46 chr13 40002710 40002889 + 2 NA Intergenic Intergenic -179010 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 330-184 chr16 26760827 26761151 + 2 NA Intergenic Intergenic -305938 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 590-125 chr4 79647975 79648356 + 2 NA Intergenic L2c|LINE|L2 155572 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 311-314 chr20 61749758 61750055 + 2 NA intron (NM_001252339, intron 2 of 14) AluSx|SINE|Alu -30158 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 200-103 chr17 48785023 48785173 + 2 NA exon (NM_173623, exon 6 of 9) exon (NM_173623, exon 6 of 9) 9226 NM_173623 284076 Hs.91930 NM_173623 ENSG00000170703 TTLL6 TTL.6 tubulin tyrosine ligase like 6 protein-coding 257-384 chr7 40603674 40603887 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 376159 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 292-40 chr10 37241140 37241297 + 2 NA Intergenic Intergenic -67968 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 264-312 chr5 21150575 21150741 + 2 NA Intergenic Intergenic -308822 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 263-99 chr14 42460258 42460421 + 2 NA Intergenic Intergenic 853483 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 438-267 chr8 34835257 34835661 + 2 NA intron (NR_125746, intron 3 of 3) intron (NR_125746, intron 3 of 3) 51538 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 270-232 chr3 26641751 26641985 + 2 NA intron (NM_001317810, intron 2 of 2) Charlie1b|DNA|hAT-Charlie 17201 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 232-176 chr2 100507900 100508060 + 2 NA Intergenic L1M4b|LINE|L1 37498 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 238-158 chr2 13698636 13698794 + 2 NA Intergenic Intergenic -691702 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 504-40 chr11 81161302 81161647 + 2 NA Intergenic L1M5|LINE|L1 -398671 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 398-75 chr12 39040779 39041014 + 2 NA Intergenic Intergenic -135305 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 328-148 chr14 50139655 50139927 + 2 NA intron (NM_006939, intron 17 of 22) MIRb|SINE|MIR -23219 NM_024558 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 418-143 chr20 55231753 55232010 + 2 NA Intergenic Intergenic -191162 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 255-227 chr2 217238856 217239101 + 2 NA Intergenic Intergenic -43755 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 360-12 chr1 158984563 158984854 + 2 NA Intergenic L1PA15|LINE|L1 -15268 NM_001364867 3428 Hs.380250 NM_005531 ENSG00000163565 IFI16 IFNGIP1|PYHIN2 interferon gamma inducible protein 16 protein-coding 537-66 chr14 50695520 50695896 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -27402 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 310-489 chr7 91442452 91442618 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 178102 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 717-46 chr2 133027855 133028444 + 2 NA intron (NM_207481, intron 6 of 17) Tigger4a|DNA|TcMar-Tigger 112592 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 128-10 chr10 106686979 106687083 + 2 NA intron (NM_001206569, intron 10 of 25) intron (NM_001206569, intron 10 of 25) 477675 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 514-151 chr2 115087868 115088323 + 2 NA intron (NM_001178037, intron 1 of 25) MLT1A0|LTR|ERVL-MaLR 23522 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 310-575 chrX 87093502 87093713 + 2 NA Intergenic L1PREC2|LINE|L1 -424195 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 327-482 chr8 52866838 52867132 + 2 NA Intergenic L1MDa|LINE|L1 -72923 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 333-545 chr7 79718144 79718350 + 2 NA Intergenic AluJo|SINE|Alu 264287 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 343-445 chr5 115964210 115964453 + 2 NA intron (NM_173800, intron 1 of 19) intron (NM_173800, intron 1 of 19) 1856 NM_173800 206338 Hs.98288 NM_173800 ENSG00000172901 LVRN APQ|AQPEP|TAQPEP laeverin protein-coding 343-183 chr16 55327934 55328230 + 2 NA intron (NM_024335, intron 4 of 5) intron (NM_024335, intron 4 of 5) 3523 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 247-249 chr22 47253055 47253229 + 2 NA Intergenic AluY|SINE|Alu -92429 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 200-112 chr18 73087131 73087294 + 2 NA Intergenic Intergenic 177286 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 467-222 chr5 41993167 41993495 + 2 NA Intergenic L1MA9|LINE|L1 68050 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 180-104 chr3 26674833 26674977 + 2 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) -19652 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 315-85 chr11 42981353 42981551 + 2 NA Intergenic Intergenic 287917 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 258-121 chr14 48553547 48553789 + 2 NA Intergenic L1M1|LINE|L1 -758654 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 370-296 chr22 27325530 27325893 + 2 NA Intergenic Intergenic 15060 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 226-392 chrX 25829032 25829215 + 2 NA Intergenic Intergenic -309220 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 272-260 chr3 24032760 24032970 + 2 NA Intergenic L1M2|LINE|L1 70382 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 296-145 chr14 70708976 70709166 + 2 NA intron (NR_125769, intron 3 of 3) LTR9D|LTR|ERV1 10373 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 230-300 chr5 84708879 84709049 + 2 NA Intergenic Intergenic -324084 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 322-396 chr4 153649817 153650117 + 2 NA intron (NR_134873, intron 2 of 2) Tigger3b|DNA|TcMar-Tigger 9799 NR_134873 100419170 Hs.382102 NR_134873 ENSG00000250771 LOC100419170 - toll like receptor 2 pseudogene pseudo 367-281 chr3 60261428 60261668 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) -180639 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 187-77 chr2 40435642 40435769 + 2 NA intron (NM_001112802, intron 1 of 7) intron (NM_001112802, intron 1 of 7) -5401 NM_001252624 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 788-16 chr14 57641528 57642181 + 2 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -147997 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 149-10 chr1 209021765 209021889 + 2 NA Intergenic Intergenic 49373 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 253-345 chr5 132033567 132033721 + 2 NA Intergenic L1MEg|LINE|L1 -21576 NM_001205250 23305 Hs.14945 NM_015256 ENSG00000164398 ACSL6 ACS2|FACL6|LACS 6|LACS2|LACS5 acyl-CoA synthetase long chain family member 6 protein-coding 435-252 chr8 122007746 122008163 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -366514 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 225-285 chr5 93273356 93273529 + 2 NA Intergenic MIR|SINE|MIR 297901 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 365-305 chr4 181733748 181734044 + 2 NA Intergenic Intergenic 96077 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 333-341 chr3 12259067 12259271 + 2 NA Intergenic Intergenic -28316 NM_001354666 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 294-482 chr8 133706010 133706272 + 2 NA Intergenic Intergenic -22075 NR_134463 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 645-5 chr1 76694604 76694992 + 2 NA Intergenic Intergenic 84469 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 372-73 chr11 59330707 59331039 + 2 NA Intergenic Intergenic -33586 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 821-15 chr13 74845824 74846459 + 2 NA Intergenic L1MEj|LINE|L1 293298 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 412-261 chr5 106542919 106543251 + 2 NA Intergenic Intergenic 467929 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 483-179 chr3 145412768 145413100 + 2 NA Intergenic L1M1|LINE|L1 656251 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 322-526 chr8 83636789 83637084 + 2 NA Intergenic Intergenic 233178 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 311-108 chr12 103081008 103081227 + 2 NA Intergenic Intergenic -70725 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 248-390 chr7 126357928 126358167 + 2 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat 700137 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 325-216 chr17 34539226 34539413 + 2 NA Intergenic Intergenic 40050 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 648-94 chr3 96397188 96397577 + 2 NA Intergenic Intergenic 37418 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 581-154 chr7 21471306 21471710 + 2 NA TTS (NR_031594) TTS (NR_031594) 450 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 449-109 chr2 5801680 5802056 + 2 NA Intergenic (TTATTAT)n|Simple_repeat|Simple_repeat 10728 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 423-123 chr2 12829664 12829964 + 2 NA Intergenic Intergenic 92447 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 257-127 chr15 73379977 73380218 + 2 NA Intergenic MER67A|LTR|ERV1 -11139 NM_005477 10021 Hs.86941 NM_005477 ENSG00000138622 HCN4 SSS2 hyperpolarization activated cyclic nucleotide gated potassium channel 4 protein-coding 374-231 chr21 24179097 24179304 + 2 NA Intergenic Intergenic 142177 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 212-105 chr14 101211379 101211571 + 2 NA Intergenic L1MB5|LINE|L1 90619 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 370-234 chr2 69028221 69028471 + 2 NA intron (NM_032208, intron 1 of 17) L1M6|LINE|L1 15202 NM_018153 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 286-223 chr2 161154159 161154309 + 2 NA intron (NM_004180, intron 1 of 7) intron (NM_004180, intron 1 of 7) -6194 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 211-57 chr11 125073633 125073794 + 2 NA intron (NM_001145290, intron 1 of 17) intron (NM_001145290, intron 1 of 17) 10408 NM_198277 219855 Hs.352661 NM_198277 ENSG00000134955 SLC37A2 pp11662 solute carrier family 37 member 2 protein-coding 191-150 chr4 66735573 66735758 + 2 NA Intergenic MLT2D|LTR|ERVL 458841 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 436-260 chr6 17737577 17737854 + 2 NA Intergenic L1M2a|LINE|L1 30672 NR_134618 105374952 Hs.718703 NR_134616 ENSG00000272269 LOC105374952 - uncharacterized LOC105374952 ncRNA 152-33 chr16 4865177 4865308 + 2 NA intron (NM_001079514, intron 7 of 17) intron (NM_001079514, intron 7 of 17) 16862 NM_001288656 29855 Hs.440219 NM_016936 ENSG00000118900 UBN1 VT|VT4 ubinuclein 1 protein-coding 388-369 chr9 84538215 84538499 + 2 NA Intergenic L1MA3|LINE|L1 -130101 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 273-104 chr12 67338629 67338846 + 2 NA Intergenic L1MA4A|LINE|L1 69379 NM_001329676 55832 Hs.546407 NM_018448 ENSG00000111530 CAND1 TIP120|TIP120A cullin associated and neddylation dissociated 1 protein-coding 213-191 chr3 185963198 185963355 + 2 NA intron (NR_151491, intron 1 of 3) intron (NR_151491, intron 1 of 3) 3333 NR_151491 344887 Hs.128803 NR_033752 ENSG00000171658 NMRAL2P NMRAL1P1 NmrA like redox sensor 2, pseudogene pseudo 440-151 chr22 30072641 30072987 + 2 NA intron (NR_110541, intron 1 of 4) L1MB7|LINE|L1 7443 NR_110541 101929664 Hs.592197 NR_110541 HORMAD2-AS1 MTMR3-AS1 HORMAD2 and MTMR3 antisense RNA 1 ncRNA 361-252 chr20 31191654 31191983 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -65846 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 230-338 chr6 170003338 170003566 + 2 NA Intergenic Intergenic 40829 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 559-180 chr8 43816333 43816832 + 2 NA Intergenic ALR/Alpha|Satellite|centr 524140 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 299-32 chr1 220455380 220455579 + 2 NA Intergenic MER50|LTR|ERV1 -72657 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 290-175 chr17 65421933 65422084 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -35533 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 255-254 chr3 44607193 44607355 + 2 NA intron (NM_001351734, intron 2 of 6).2 L1MB2|LINE|L1 17523 NR_046658 100874094 NR_046658 ENSG00000233509 ZNF197-AS1 - ZNF197 antisense RNA 1 ncRNA 673-4 chr1 95172977 95173577 + 2 NA intron (NR_125949, intron 3 of 3) intron (NR_125949, intron 3 of 3) 55354 NM_001199691 100527978 Hs.483512 NM_001199691 ENSG00000271092 TLCD4-RWDD3 TMEM56-RWDD3 TLCD4-RWDD3 readthrough protein-coding 325-266 chr2 63208731 63209013 + 2 NA intron (NR_148705, intron 13 of 16) LSU-rRNA_Hsa|rRNA|rRNA -89330 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 681-30 chr18 37793928 37794478 + 2 NA Intergenic Intergenic 137068 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 529-240 chrUn_KI270438v1 21831 22181 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 309-372 chr3 187979926 187980203 + 2 NA Intergenic MIRc|SINE|MIR -3657 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 658-32 chr12 24260367 24260860 + 2 NA intron (NM_001261414, intron 4 of 16) L3|LINE|CR1 37342 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 335-154 chr14 42765338 42765652 + 2 NA Intergenic L1PA15|LINE|L1 1158639 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 428-137 chr2 122995158 122995409 + 2 NA Intergenic L1M4b|LINE|L1 78198 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 226-105 chr15 87206089 87206286 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -217761 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 871-38 chr8 118158301 118158980 + 2 NA intron (NR_146234, intron 4 of 5) MER52A|LTR|ERV1 -46821 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 271-195 chr2 47598164 47598386 + 2 NA Intergenic AluJr|SINE|Alu -27944 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 460-86 chr14 82919794 82920213 + 2 NA Intergenic L1MEd|LINE|L1 277371 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 221-18 chr1 176531480 176531649 + 2 NA intron (NM_021936, intron 1 of 4) intron (NM_021936, intron 1 of 4) 68389 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 149-84 chr5 119783103 119783184 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie 153584 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 352-338 chr3 166234841 166235056 + 2 NA Intergenic Intergenic -397525 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 245-146 chr15 93843289 93843468 + 2 NA Intergenic L1MCa|LINE|L1 -13182 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 353-302 chr22 25819454 25819756 + 2 NA intron (NM_001318245, intron 12 of 43) MER113|DNA|hAT-Charlie 77417 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 318-447 chr5 75949087 75949261 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -134209 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 283-196 chr18 41682274 41682440 + 2 NA Intergenic MIR|SINE|MIR -161680 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 237-331 chr6 112768624 112768790 + 2 NA Intergenic L2|LINE|L2 421377 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 208-39 chr11 75587875 75588031 + 2 NA exon (NM_033063, exon 4 of 4) exon (NM_033063, exon 4 of 4) 4757 NR_145823 105369391 Hs.689687 NR_145823 ENSG00000255326 LOC105369391 - uncharacterized LOC105369391 ncRNA 264-283 chr3 160578800 160578989 + 2 NA Intergenic L1ME4a|LINE|L1 -13323 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 345-250 chr2 41495460 41495747 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -381952 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 497-239 chr5 152626181 152626527 + 2 NA intron (NR_109877, intron 4 of 4) MLT2B3|LTR|ERVL -221075 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 231-289 chr5 82465273 82465472 + 2 NA Intergenic MIRc|SINE|MIR 185910 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 257-433 chr9 25179580 25179742 + 2 NA Intergenic L1M4c|LINE|L1 499197 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 215-36 chr10 60050304 60050451 + 2 NA intron (NM_001204403, intron 42 of 43) intron (NM_001204403, intron 42 of 43) -89464 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 452-112 chr18 76123982 76124422 + 2 NA intron (NR_040034, intron 2 of 5) intron (NR_040034, intron 2 of 5) 1204 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 506-246 chr5 179312324 179312663 + 2 NA intron (NM_014244, intron 2 of 21) MLT1A0|LTR|ERVL-MaLR 32968 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 400-235 chr3 191799492 191799740 + 2 NA Intergenic L1PA16|LINE|L1 338453 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 253-20 chr1 169635414 169635629 + 2 NA Intergenic L1MA8|LINE|L1 -5397 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 389-24 chr10 16515357 16515658 + 2 NA intron (NM_001010908, intron 1 of 1) intron (NM_001010908, intron 1 of 1) 6372 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 262-115 chr14 27068203 27068411 + 2 NA Intergenic Intergenic 159665 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 264-403 chr8 35440194 35440439 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -104076 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 226-310 chr6 110752111 110752291 + 2 NA intron (NM_001300964, intron 1 of 12) L1MC5|LINE|L1 -62420 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 306-286 chr20 55639314 55639501 + 2 NA Intergenic Intergenic -212210 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 392-81 chr14 45670553 45670887 + 2 NA Intergenic L2b|LINE|L2 44882 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 237-325 chr6 53724186 53724414 + 2 NA Intergenic L1MEd|LINE|L1 -58544 NM_001003760 401265 Hs.131064 NM_001003760 ENSG00000124743 KLHL31 BKLHD6|KBTBD1|KLHL|bA345L23.2 kelch like family member 31 protein-coding 341-331 chr3 55231969 55232160 + 2 NA Intergenic Intergenic 53892 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 317-339 chr4 35380888 35381088 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 862951 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 509-268 chr9 78836053 78836483 + 2 NA Intergenic Intergenic 309398 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 264-329 chr5 87957186 87957411 + 2 NA Intergenic Intergenic 295256 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 367-479 chr9 108538205 108538556 + 2 NA Intergenic Intergenic 317606 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 308-147 chr14 67556460 67556629 + 2 NA intron (NM_020715, intron 3 of 28) AluJo|SINE|Alu -22694 NM_001348546 161145 Hs.509707 NM_182526 ENSG00000198133 TMEM229B C14orf83 transmembrane protein 229B protein-coding 295-432 chr7 29864432 29864631 + 2 NA intron (NM_001080529, intron 2 of 8) L1MD|LINE|L1 57977 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 239-158 chr2 4360045 4360207 + 2 NA Intergenic Intergenic 296096 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 257-253 chr22 26259700 26259932 + 2 NA intron (NM_001184776, intron 1 of 14) MamRep564|Unknown|Unknown 90342 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 234-195 chr2 175261062 175261285 + 2 NA Intergenic Intergenic -79463 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 225-33 chr10 33547440 33547615 + 2 NA Intergenic Intergenic -212622 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 488-75 chr14 45159252 45159710 + 2 NA intron (NM_001308133, intron 8 of 21) intron (NM_001308133, intron 8 of 21) 23542 NM_001308134 57697 Hs.509229 NM_020937 ENSG00000187790 FANCM FAAP250|KIAA1596|POF15|SPGF28 FA complementation group M protein-coding 385-359 chr7 80373476 80373668 + 2 NA intron (NR_110075, intron 2 of 3) intron (NR_110075, intron 2 of 3) 867 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 360-187 chr19 11393522 11393819 + 2 NA TTS (NM_001161616) TTS (NM_001161616) -9356 NR_033663 2057 Hs.631624 NM_000121 ENSG00000187266 EPOR EPO-R erythropoietin receptor protein-coding 147-59 chr3 61117097 61117215 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 134296 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 395-47 chr10 120373723 120374102 + 2 NA Intergenic Intergenic -18689 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 327-472 chr7 112765582 112765800 + 2 NA non-coding (NR_109840, exon 4 of 4) non-coding (NR_109840, exon 4 of 4) 24702 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 252-288 chr4 19214850 19215062 + 2 NA Intergenic Intergenic -1036949 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 443-4 chr1 49447366 49447794 + 2 NA intron (NR_046839, intron 2 of 3) L1MA4A|LINE|L1 24505 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 366-334 chr5 7355510 7355856 + 2 NA Intergenic L1MC1|LINE|L1 -7706 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 243-390 chr6 76440255 76440413 + 2 NA Intergenic Intergenic 153289 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 439-251 chr6 152733690 152734076 + 2 NA Intergenic L1M4|LINE|L1 -16914 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 238-149 chr18 39132110 39132306 + 2 NA Intergenic Intergenic 489967 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 289-36 chr1 217206199 217206362 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -68578 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 357-267 chr3 42608746 42609095 + 2 NA intron (NM_001349126, intron 2 of 18) AluSz|SINE|Alu -7842 NM_001201572 9117 Hs.445892 NM_004206 ENSG00000093183 SEC22C SEC22L3 SEC22 homolog C, vesicle trafficking protein protein-coding 360-48 chr10 83754472 83754789 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -77541 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 256-340 chr5 146584934 146585167 + 2 NA Intergenic Intergenic -68937 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 592-175 chr8 104102706 104103260 + 2 NA intron (NM_001348498, intron 19 of 24) intron (NM_001348498, intron 19 of 24) -120352 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 507-248 chr8 102377701 102378202 + 2 NA intron (NM_001282873, intron 1 of 58) intron (NM_001282873, intron 1 of 58) 34738 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 425-214 chr4 138409558 138409854 + 2 NA intron (NR_051987, intron 2 of 2) intron (NR_051987, intron 2 of 2) 99995 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 457-217 chr6 62282618 62283010 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 3411 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 438-2 chr1 29104725 29105040 + 2 NA intron (NM_004437, intron 16 of 18) AluSg|SINE|Alu 17619 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 112-30 chr22 24350330 24350392 + 2 NA intron (NM_015330, intron 11 of 16) L2a|LINE|L2 8253 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 279-180 chr2 79502906 79503079 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -2148 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 182-171 chr8 114803302 114803441 + 2 NA Intergenic Intergenic 864642 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 300-406 chr6 140365230 140365441 + 2 NA Intergenic L1MEc|LINE|L1 160083 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 389-268 chr4 105051288 105051606 + 2 NA Intergenic L1PA11|LINE|L1 -94428 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 598-102 chr5 7616115 7616561 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 220200 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 187-75 chr2 6345339 6345477 + 2 NA Intergenic Intergenic 30014 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 212-162 chr2 112493660 112493865 + 2 NA intron (NM_153712, intron 2 of 6) intron (NM_153712, intron 2 of 6) 11606 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 386-274 chr4 187319425 187319729 + 2 NA intron (NR_038931, intron 1 of 4) L1PA13|LINE|L1 -51071 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 158-52 chr2 58925827 58925960 + 2 NA non-coding (NR_033873, exon 6 of 14) non-coding (NR_033873, exon 6 of 14) -291815 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 236-283 chr5 39877708 39877886 + 2 NA Intergenic Intergenic -174494 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 459-311 chr8 135172401 135172717 + 2 NA Intergenic MIRb|SINE|MIR -61572 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 135-65 chr7 14976259 14976350 + 2 NA Intergenic Intergenic -1446 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 342-94 chr11 66446194 66446502 + 2 NA Intergenic MER4B|LTR|ERV1 -7500 NM_016050 65003 Hs.418450 NM_016050 ENSG00000174547 MRPL11 CGI-113|L11MT|MRP-L11 mitochondrial ribosomal protein L11 protein-coding 198-150 chr22 29973380 29973520 + 2 NA intron (NM_153051, intron 3 of 18) intron (NM_153051, intron 3 of 18) -33599 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 240-178 chr17 59064313 59064515 + 2 NA intron (NR_148346, intron 9 of 23) intron (NR_148346, intron 9 of 23) 42466 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 615-85 chr3 111005903 111006370 + 2 NA Intergenic Intergenic 63823 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 750-28 chr19 51840748 51841347 + 2 NA intron (NR_163433, intron 8 of 11) LTR46|LTR|ERV1 45890 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 506-55 chr11 63387090 63387550 + 2 NA intron (NM_080866, intron 6 of 9) L1M1|LINE|L1 17535 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 302-255 chr21 17773391 17773558 + 2 NA Intergenic L1PA7|LINE|L1 19035 NR_038870 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 336-477 chr6 9983613 9983862 + 2 NA Intergenic L1MEd|LINE|L1 -420765 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 330-156 chr14 53387028 53387229 + 2 NA Intergenic Intergenic 233774 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 325-526 chr8 18726192 18726386 + 2 NA intron (NM_015310, intron 9 of 15) intron (NM_015310, intron 9 of 15) 82578 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 161-73 chr4 11220706 11220818 + 2 NA Intergenic L1M5|LINE|L1 -148065 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 723-27 chr18 45543376 45544035 + 2 NA intron (NM_001371319, intron 5 of 23) MER68|LTR|ERVL -36669 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 330-42 chr1 216880929 216881107 + 2 NA intron (NM_001243507, intron 2 of 7) intron (NM_001243507, intron 2 of 7) 58655 NM_001243513 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 186-120 chr4 75174770 75174871 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -90112 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 192-131 chr3 38898954 38899086 + 2 NA intron (NM_014139, intron 13 of 25) L4_A_Mam|LINE|RTE-X 51541 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 620-106 chr5 22992177 22992641 + 2 NA Intergenic L1M1|LINE|L1 -139065 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 440-224 chr6 133548547 133548880 + 2 NA intron (NR_109982, intron 5 of 8) intron (NR_109982, intron 5 of 8) -272434 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 479-254 chr8 114527263 114527606 + 2 NA Intergenic Intergenic -1090495 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 393-72 chr12 41380095 41380436 + 2 NA intron (NM_001164595, intron 3 of 9) L1MA9|LINE|L1 -57474 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 175-26 chr10 75963210 75963324 + 2 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 180506 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 513-155 chr2 225776778 225777113 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -365849 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 220-240 chr3 134766500 134766683 + 2 NA Intergenic Intergenic -28669 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 264-123 chr14 35451053 35451285 + 2 NA Intergenic Intergenic -46415 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 342-512 chr8 72904422 72904611 + 2 NA intron (NM_004770, intron 2 of 2) L1PA11|LINE|L1 -104348 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 208-247 chr7 49804971 49805136 + 2 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 29720 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 460-243 chr5 98095342 98095612 + 2 NA intron (NR_146477, intron 3 of 4) MSTA|LTR|ERVL-MaLR 65762 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 314-204 chr16 17325855 17326039 + 2 NA intron (NM_022166, intron 2 of 11) MIR3|SINE|MIR 145013 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 523-211 chr5 3002995 3003411 + 2 NA Intergenic Intergenic 85349 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 269-49 chr10 84889059 84889312 + 2 NA Intergenic L1M6|LINE|L1 309720 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 239-371 chr7 40857220 40857375 + 2 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 122642 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 409-235 chr4 172705560 172705928 + 2 NA intron (NR_125894, intron 1 of 2) L1M3f|LINE|L1 -16827 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 695-14 chr10 59401110 59401608 + 2 NA Intergenic L1P4|LINE|L1 -38178 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 541-58 chr13 105464028 105464485 + 2 NA intron (NR_040247, intron 5 of 6) intron (NR_040247, intron 5 of 6) -1611 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 293-16 chr1 170449825 170450091 + 2 NA Intergenic Intergenic -82164 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 192-232 chrX 93696349 93696509 + 2 NA intron (NM_001171110, intron 3 of 4) MamRep1879|DNA|hAT-Tip100? 22223 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 220-162 chr2 59504979 59505146 + 2 NA Intergenic Intergenic 287354 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 276-273 chr21 30807318 30807561 + 2 NA Intergenic Intergenic 5835 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 604-84 chr2 107256930 107257389 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 92366 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 371-189 chr2 144057775 144058050 + 2 NA intron (NM_001354355, intron 7 of 13) FLAM_A|SINE|Alu 120845 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 365-108 chr13 35598842 35599135 + 2 NA intron (NM_001204197, intron 7 of 17) MLT1H-int|LTR|ERVL-MaLR -98536 NR_132116 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 274-380 chr8 63847250 63847456 + 2 NA Intergenic Intergenic 77923 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 343-12 chr1 77257077 77257374 + 2 NA Intergenic L1PA12|LINE|L1 -24794 NM_174858 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 477-75 chr12 28934824 28935176 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -214278 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 355-526 chr8 141016020 141016256 + 2 NA Intergenic Intergenic -14059 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 322-548 chr8 131302615 131302919 + 2 NA Intergenic L1PB4|LINE|L1 -261858 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 215-186 chr22 28758634 28758808 + 2 NA Intergenic AluSq|SINE|Alu -13953 NM_001284264 150275 Hs.406460 NM_173510 ENSG00000159873 CCDC117 dJ366L4.1 coiled-coil domain containing 117 protein-coding 599-29 chr12 23365225 23365733 + 2 NA Intergenic LTR24C|LTR|ERV1 189843 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 250-327 chr4 171915270 171915473 + 2 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -101764 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 286-436 chr7 141284778 141284967 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) 210808 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 638-168 chr9 13828942 13829331 + 2 NA Intergenic Intergenic -98835 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 207-268 chr7 43693805 43693965 + 2 NA intron (NR_163914, intron 1 of 8) L2a|LINE|L2 35638 NR_135583 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 581-124 chr4 158928865 158929299 + 2 NA intron (NM_152543, intron 3 of 4) AluJr|SINE|Alu 106147 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 249-194 chr2 69301259 69301501 + 2 NA Intergenic L1MA9|LINE|L1 85847 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 519-193 chr6 40015734 40016074 + 2 NA Intergenic L1MA4|LINE|L1 -81442 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 611-115 chr5 38036990 38037444 + 2 NA intron (NR_147009, intron 2 of 2) MIRb|SINE|MIR 11520 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 215-259 chr5 67645894 67646022 + 2 NA intron (NR_147169, intron 1 of 2) intron (NR_147169, intron 1 of 2) 831 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 278-410 chr8 53560463 53560699 + 2 NA Intergenic L1PREC2|LINE|L1 -36616 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 230-71 chr12 4458434 4458653 + 2 NA Intergenic L1MC1|LINE|L1 -12929 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 339-78 chr10 113925412 113925701 + 2 NA Intergenic L1M4|LINE|L1 70895 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 257-57 chr11 14349831 14350009 + 2 NA intron (NM_001177314, intron 1 of 5) L1MC4|LINE|L1 8565 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 263-100 chr14 44347406 44347581 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 159790 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 206-268 chr8 101285332 101285478 + 2 NA Intergenic MER3|DNA|hAT-Charlie -79341 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 222-261 chr4 32535860 32536037 + 2 NA Intergenic L1MB8|LINE|L1 184910 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 359-370 chr4 96868874 96869174 + 2 NA Intergenic Intergenic -497902 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 262-302 chr4 32176909 32177125 + 2 NA Intergenic Intergenic -154595 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 211-195 chr3 109486871 109487070 + 2 NA intron (NR_109841, intron 4 of 4) L1P4|LINE|L1 76980 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 415-76 chr14 86347871 86348139 + 2 NA Intergenic Intergenic 413327 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 331-250 chr2 24990488 24990796 + 2 NA intron (NR_034113, intron 1 of 2) HERVL-int|LTR|ERVL 18530 NR_034113 729723 Hs.436366 NR_034113 ENSG00000224165 DNAJC27-AS1 - DNAJC27 antisense RNA 1 ncRNA 504-200 chr4 123542399 123542742 + 2 NA Intergenic AluJb|SINE|Alu -107421 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 352-194 chr18 24650568 24650819 + 2 NA intron (NR_040033, intron 1 of 2) HERV16-int|LTR|ERVL 22511 NR_040033 729950 Hs.585850 NR_040033 ENSG00000265485 LINC01915 - long intergenic non-protein coding RNA 1915 ncRNA 214-352 chr9 81216172 81216325 + 2 NA Intergenic L1MC5|LINE|L1 473287 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 409-261 chr6 54318620 54318926 + 2 NA intron (NM_014464, intron 1 of 10) L2|LINE|L2 10332 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 327-271 chr2 137801437 137801689 + 2 NA Intergenic LTR8B|LTR|ERV1 126369 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 539-195 chr7 88577484 88577865 + 2 NA Intergenic Intergenic -182026 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 409-25 chr10 52522784 52523043 + 2 NA Intergenic L2a|LINE|L2 -52380 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 349-66 chr10 75071490 75071669 + 2 NA Intergenic Intergenic -12996 NM_001003892 338599 Hs.535090 NM_001003892 ENSG00000188716 DUPD1 DUSP27|FMDSP dual specificity phosphatase and pro isomerase domain containing 1 protein-coding 234-310 chr5 63845459 63845618 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 116754 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 336-487 chr6 54798925 54799115 + 2 NA Intergenic Intergenic -47751 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 287-149 chr15 94564995 94565207 + 2 NA Intergenic Intergenic 209171 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 305-522 chr8 31821497 31821751 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 181872 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 149-3 chr1 75811503 75811641 + 2 NA intron (NM_002440, intron 4 of 19) intron (NM_002440, intron 4 of 19) 14690 NM_002440 4438 Hs.216639 NM_002440 ENSG00000057468 MSH4 - mutS homolog 4 protein-coding 322-90 chr11 62211687 62211890 + 2 NA intron (NM_002407, intron 2 of 2) intron (NM_002407, intron 2 of 2) 3115 NM_002407 4246 Hs.97644 NM_002407 ENSG00000124939 SCGB2A1 LPHC|LPNC|MGB2|UGB3 secretoglobin family 2A member 1 protein-coding 350-572 chrX 91421674 91421987 + 2 NA intron (NR_110659, intron 1 of 3) L1MCa|LINE|L1 -13009 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 754-8 chr10 83241758 83242209 + 2 NA Intergenic Intergenic 435106 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 294-2 chr1 42865215 42865426 + 2 NA intron (NR_104171, intron 1 of 3) L1M2|LINE|L1 7698 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 317-26 chr1 174644538 174644852 + 2 NA intron (NM_001366446, intron 14 of 25) intron (NM_001366446, intron 14 of 25) -55844 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 226-334 chr8 15378384 15378601 + 2 NA Intergenic Intergenic -140061 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 340-59 chr10 101885336 101885665 + 2 NA intron (NM_024541, intron 24 of 25) L1MB4|LINE|L1 -41580 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 359-106 chr12 2437250 2437571 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 167634 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 298-408 chr6 121552323 121552556 + 2 NA Intergenic HAL1M8|LINE|L1 116793 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 321-501 chr6 81729879 81730107 + 2 NA Intergenic Intergenic 22688 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 401-178 chr2 212426312 212426637 + 2 NA promoter-TSS (NR_031643) promoter-TSS (NR_031643) -114 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 331-143 chr13 109053470 109053644 + 2 NA intron (NM_015011, intron 25 of 34) intron (NM_015011, intron 25 of 34) 113746 NR_047700 100885782 Hs.655942 NR_047700 ENSG00000236242 MYO16-AS1 - MYO16 antisense RNA 1 ncRNA 301-261 chr21 26730542 26730740 + 2 NA Intergenic L1PB3|LINE|L1 114768 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 288-449 chr8 115071027 115071217 + 2 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat 596891 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 263-21 chr1 170167926 170168116 + 2 NA TTS (NM_001136107) TTS (NM_001136107) -6358 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 495-112 chr2 81848275 81848721 + 2 NA Intergenic MIR|SINE|MIR -381552 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 490-298 chr8 114773201 114773546 + 2 NA Intergenic Intergenic 894640 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 473-155 chr20 41936682 41937044 + 2 NA Intergenic Intergenic -318486 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 288-79 chr12 251458 251642 + 2 NA intron (NM_016615, intron 2 of 14) L1ME2z|LINE|L1 5749 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 291-9 chr1 89619572 89619852 + 2 NA Intergenic Intergenic 13182 NR_033981 400761 Hs.741594 NR_033981 ENSG00000231999 LRRC8C-DT - LRRC8C divergent transcript ncRNA 315-117 chr13 66314702 66314979 + 2 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 96590 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 316-225 chr18 49551702 49551952 + 2 NA Intergenic Intergenic -10230 NM_006033 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 520-167 chr20 41888523 41888939 + 2 NA Intergenic Intergenic -270354 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 210-289 chr8 100879079 100879265 + 2 NA Intergenic Intergenic 71399 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 269-46 chr10 51283103 51283302 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -16371 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 437-203 chr4 177925474 177925873 + 2 NA intron (NR_028342, intron 2 of 5) L1MC4a|LINE|L1 -17737 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 391-315 chr6 137475736 137476112 + 2 NA Intergenic Intergenic 18470 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 308-105 chr12 31923967 31924153 + 2 NA Intergenic Intergenic -35355 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 293-74 chr12 352819 352995 + 2 NA intron (NM_001042603, intron 8 of 27) intron (NM_001042603, intron 8 of 27) 36413 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 354-486 chr8 137869439 137869731 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 213960 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 269-375 chr7 23817176 23817440 + 2 NA intron (NM_031414, intron 23 of 23) intron (NM_031414, intron 23 of 23) 107089 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 472-171 chr2 179466006 179466318 + 2 NA intron (NM_001352810, intron 6 of 10) intron (NM_001352810, intron 6 of 10) 96426 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 518-23 chr10 33371105 33371482 + 2 NA Intergenic Intergenic -36388 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 523-24 chr10 35099488 35099840 + 2 NA Intergenic AluSx|SINE|Alu -9050 NM_001198777 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 366-438 chr8 76420593 76420950 + 2 NA intron (NR_105006, intron 1 of 5) L1MEd|LINE|L1 14117 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 165-122 chr7 53784383 53784526 + 2 NA intron (NR_038371, intron 1 of 5) L1ME3F|LINE|L1 27477 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 421-96 chr15 99600897 99601210 + 2 NA intron (NM_001319206, intron 2 of 11) L1MEc|LINE|L1 -31925 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 348-260 chr20 16088023 16088213 + 2 NA Intergenic MER101-int|LTR|ERV1 -102236 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 323-250 chr2 67914013 67914275 + 2 NA Intergenic Intergenic -88582 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 338-53 chr10 34113628 34113818 + 2 NA intron (NM_001184789, intron 22 of 22) MIRb|SINE|MIR -341043 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 179-81 chr4 42281344 42281454 + 2 NA Intergenic Intergenic 109869 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 190-24 chr11 29927001 29927157 + 2 NA Intergenic Intergenic 55314 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 435-208 chr5 131098796 131099091 + 2 NA Intergenic Intergenic 66313 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 396-371 chr9 36700557 36700804 + 2 NA Intergenic L2-1_AMi|LINE|L2 122919 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 291-282 chr3 24883476 24883677 + 2 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 54253 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 332-458 chr6 102741187 102741418 + 2 NA Intergenic Intergenic 1342317 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 358-104 chr13 35396677 35396950 + 2 NA intron (NM_015678, intron 38 of 57) L1MEf|LINE|L1 79876 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 543-217 chr6 62134799 62135202 + 2 NA intron (NR_146874, intron 2 of 13) THE1B-int|LTR|ERVL-MaLR 151225 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 220-104 chr13 104607779 104607949 + 2 NA Intergenic Intergenic -858003 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 408-267 chr5 87130539 87130851 + 2 NA intron (NR_105018, intron 1 of 3) L1PA16|LINE|L1 10547 NR_105018 101929380 NR_105018 LOC101929380 - uncharacterized LOC101929380 ncRNA 317-317 chr3 126176184 126176433 + 2 NA intron (NM_001270364, intron 1 of 22) L1MC2|LINE|L1 -3757 NR_046383 100862662 Hs.633362 NR_046383 ENSG00000246022 ALDH1L1-AS2 - ALDH1L1 antisense RNA 2 ncRNA 352-97 chr12 31958357 31958669 + 2 NA promoter-TSS (NM_018169) promoter-TSS (NM_018169) -902 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 350-334 chr3 190475115 190475458 + 2 NA Intergenic L1MA4|LINE|L1 -25410 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 294-207 chr2 45349554 45349708 + 2 NA Intergenic Intergenic -94690 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 381-115 chr15 83639414 83639774 + 2 NA Intergenic Intergenic -14529 NM_001301110 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 393-193 chr20 7835443 7835802 + 2 NA Intergenic Intergenic 104836 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 237-391 chr8 126198772 126198909 + 2 NA Intergenic Intergenic -126655 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 334-298 chr2 216177156 216177429 + 2 NA intron (NM_021141, intron 16 of 20) intron (NM_021141, intron 16 of 20) -39597 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 318-545 chr8 84815119 84815390 + 2 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 109327 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 217-308 chr5 125012412 125012562 + 2 NA Intergenic Intergenic -24344 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 296-6 chr1 71702332 71702542 + 2 NA intron (NM_173808, intron 3 of 6) intron (NM_173808, intron 3 of 6) 134575 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 134-22 chr12 15568698 15568819 + 2 NA intron (NM_030671, intron 6 of 13) intron (NM_030671, intron 6 of 13) 22147 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 514-47 chr11 35237464 35237852 + 2 NA Intergenic Intergenic 74708 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 626-99 chr4 41725437 41725933 + 2 NA Intergenic Intergenic 23285 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 264-394 chr7 117436750 117436936 + 2 NA Intergenic Intergenic -9350 NM_001301821 136991 Hs.352412 NM_130768 ENSG00000154438 ASZ1 ALP1|ANKL1|C7orf7|CT1.19|GASZ|Orf3 ankyrin repeat, SAM and basic leucine zipper domain containing 1 protein-coding 340-113 chr12 74330809 74331077 + 2 NA Intergenic L1MA10|LINE|L1 -38312 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 343-85 chr11 128216752 128216942 + 2 NA intron (NR_146647, intron 3 of 3) L1MD|LINE|L1 8081 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 342-424 chr5 125129195 125129379 + 2 NA intron (NR_109882, intron 2 of 5) MLT1A1|LTR|ERVL-MaLR 92456 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 344-101 chr12 16816553 16816755 + 2 NA Intergenic L1MA9|LINE|L1 -172093 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 359-220 chr2 27521493 27521705 + 2 NA intron (NM_001486, intron 17 of 18) AluSx3|SINE|Alu 24760 NM_001486 2646 Hs.89771 NM_001486 ENSG00000084734 GCKR FGQTL5|GKRP glucokinase regulator protein-coding 228-175 chr2 133989588 133989778 + 2 NA Intergenic LTR85c|LTR|Gypsy? -130252 NM_001371457 374-196 chr2 122411633 122411906 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 656118 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 714-27 chr15 57876467 57877004 + 2 NA Intergenic L1M3f|LINE|L1 137288 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 634-45 chr12 72973281 72973781 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -185659 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 336-515 chr7 46633679 46633895 + 2 NA Intergenic Intergenic 63335 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 452-202 chr4 168975660 168976091 + 2 NA Intergenic L1PBa|LINE|L1 34380 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 277-414 chr8 87824255 87824491 + 2 NA Intergenic MER92-int|LTR|ERV1 49642 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 440-50 chr12 78322073 78322424 + 2 NA Intergenic Intergenic 37498 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 263-317 chr5 25437885 25438121 + 2 NA Intergenic Intergenic 247050 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 435-117 chr2 34335272 34335605 + 2 NA Intergenic Intergenic 268212 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 282-38 chr10 31728112 31728389 + 2 NA Intergenic LTR8B|LTR|ERV1 180676 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 329-128 chr12 88913206 88913416 + 2 NA Intergenic L1MA4A|LINE|L1 106381 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 200-220 chr5 105045072 105045210 + 2 NA Intergenic Intergenic -54333 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 255-45 chr11 3359565 3359770 + 2 NA exon (NM_001130520, exon 6 of 6) exon (NM_001130520, exon 6 of 6) 19479 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 531-219 chr6 124859252 124859717 + 2 NA Intergenic Intergenic -103061 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 421-227 chr4 172941540 172941869 + 2 NA intron (NM_001034845, intron 9 of 12) intron (NM_001034845, intron 9 of 12) -214826 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 580-156 chr5 113416608 113416949 + 2 NA intron (NM_001085377, intron 1 of 18) L1ME4b|LINE|L1 18211 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 630-94 chr4 27297587 27298061 + 2 NA Intergenic Intergenic 80345 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 257-434 chr9 26805347 26805596 + 2 NA Intergenic Intergenic 87331 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 335-235 chr2 30505731 30506030 + 2 NA intron (NM_001304445, intron 3 of 7) intron (NM_001304445, intron 3 of 7) 58634 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 363-365 chr5 97717589 97717892 + 2 NA Intergenic Intergenic -123018 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 230-251 chr4 288037 288190 + 2 NA intron (NM_001137608, intron 3 of 3) L1M3|LINE|L1 17361 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 210-295 chr8 118563572 118563736 + 2 NA intron (NM_001101676, intron 2 of 4) MIR3|SINE|MIR -57347 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 543-22 chr1 221611157 221611551 + 2 NA Intergenic Intergenic 125546 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 371-193 chr2 159012593 159012924 + 2 NA intron (NM_001350063, intron 2 of 24) intron (NM_001350063, intron 2 of 24) 44118 NM_033394 85461 Hs.61590 NM_033394 ENSG00000115183 TANC1 ROLSB|TANC tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 204-286 chr8 91244413 91244576 + 2 NA intron (NM_001282357, intron 2 of 18) AluJb|SINE|Alu -4825 NM_052832 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 158-83 chr4 58677234 58677378 + 2 NA Intergenic LTR49-int|LTR|ERV1 -140978 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 464-173 chr3 162501833 162502143 + 2 NA Intergenic MLT2B2|LTR|ERVL 801313 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 242-229 chr3 8130468 8130637 + 2 NA Intergenic AluSx|SINE|Alu -114245 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 757-50 chr5 149278928 149279540 + 2 NA intron (NM_152406, intron 1 of 18) L3|LINE|CR1 7375 NM_001323062 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 395-340 chr8 98226330 98226550 + 2 NA intron (NR_135747, intron 4 of 11) L1M1|LINE|L1 67795 NM_024759 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 137-26 chr14 62014783 62014879 + 2 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) 87136 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 203-90 chr18 11989933 11990060 + 2 NA intron (NM_014214, intron 1 of 7) intron (NM_014214, intron 1 of 7) 8489 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 531-234 chr7 141303802 141304157 + 2 NA intron (NM_001195278, intron 2 of 3) MIRb|SINE|MIR 229915 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 312-355 chr3 196932754 196932955 + 2 NA 3' UTR (NM_001308045, exon 9 of 9) 3' UTR (NM_001308045, exon 9 of 9) -7023 NR_046630 100874001 Hs.591671 NR_046630 NCBP2-AS1 - NCBP2 antisense RNA 1 ncRNA 505-144 chr2 65463747 65464051 + 2 NA Intergenic Intergenic -31300 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 232-318 chr5 167468410 167468574 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -105167 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 369-257 chr3 19309495 19309705 + 2 NA intron (NM_144633, intron 3 of 15) intron (NM_144633, intron 3 of 15) 5331 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 577-39 chr11 21415499 21415929 + 2 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 746128 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 338-46 chr10 11522294 11522490 + 2 NA intron (NM_014688, intron 4 of 14) intron (NM_014688, intron 4 of 14) 9888 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 392-159 chr2 149248652 149248957 + 2 NA Intergenic Intergenic -81181 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 354-492 chr9 31524088 31524322 + 2 NA Intergenic Intergenic -142715 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 377-19 chr1 118119864 118120208 + 2 NA intron (NM_206996, intron 3 of 48) L1ME4a|LINE|L1 65192 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 413-234 chr5 31259261 31259574 + 2 NA intron (NM_001362435, intron 1 of 10) intron (NM_001362435, intron 1 of 10) 65731 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 471-136 chr2 115588233 115588668 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 244635 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 425-181 chr3 57431879 57432155 + 2 NA intron (NM_001366028, intron 32 of 73) intron (NM_001366028, intron 32 of 73) 112327 NM_198564 201625 Hs.201378 NM_178504 ENSG00000174844 DNAH12 DHC3|DLP12|DLP3|DNAH12L|DNAH7L|DNAHC12|DNAHC3|DNHD2|HDHC3|HL-19|HL19 dynein axonemal heavy chain 12 protein-coding 299-476 chr9 4539689 4539982 + 2 NA intron (NM_004170, intron 1 of 11) AluSg4|SINE|Alu 49367 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 270-85 chr12 51970145 51970397 + 2 NA intron (NM_020327, intron 1 of 8) MIRc|SINE|MIR 16891 NM_020327 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor type 1B protein-coding 527-145 chr2 171365930 171366375 + 2 NA intron (NM_001321158, intron 1 of 8) intron (NM_001321158, intron 1 of 8) 67838 NM_001321154 79828 Hs.135146 NM_024770 ENSG00000123600 METTL8 TIP methyltransferase like 8 protein-coding 359-367 chr4 90451874 90452172 + 2 NA intron (NM_207491, intron 4 of 7) MER52-int|LTR|ERV1 216992 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 259-417 chr8 131732500 131732712 + 2 NA Intergenic L1MCa|LINE|L1 -171487 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 259-310 chr5 37791567 37791757 + 2 NA Intergenic MamRep605|LTR?|LTR? 43160 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 340-209 chr17 74138297 74138602 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -65229 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 481-80 chr13 76176658 76177001 + 2 NA Intergenic L1MB1|LINE|L1 -241697 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 237-327 chr6 62755695 62755919 + 2 NA Intergenic Intergenic -469580 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 1029-11 chr3 162648035 162648887 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 654840 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 467-303 chrX 55971592 55971923 + 2 NA intron (NM_001324105, intron 1 of 5) L1MA3|LINE|L1 63472 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 255-433 chr8 117705243 117705468 + 2 NA Intergenic Intergenic 184642 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 438-136 chr2 208564569 208564892 + 2 NA intron (NR_136588, intron 1 of 5) intron (NR_136588, intron 1 of 5) 22088 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 309-199 chr17 34019365 34019624 + 2 NA intron (NM_001094, intron 1 of 9) Tigger1|DNA|TcMar-Tigger 137312 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 386-28 chr10 22875297 22875596 + 2 NA Intergenic MER77B|LTR|ERVL -52578 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 312-467 chr6 169053434 169053641 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -14249 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 299-171 chr17 53208550 53208833 + 2 NA Intergenic L1PB1|LINE|L1 223186 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 332-597 chrX 117755857 117756091 + 2 NA Intergenic MIR|SINE|MIR 217764 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 302-147 chr15 91681560 91681831 + 2 NA Intergenic Intergenic -172013 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 374-83 chr13 23157233 23157517 + 2 NA Intergenic AluYc|SINE|Alu -23546 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 321-583 chr8 138598057 138598370 + 2 NA intron (NM_152888, intron 61 of 64) intron (NM_152888, intron 61 of 64) -100483 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 433-160 chr21 21276090 21276473 + 2 NA intron (NM_001352592, intron 2 of 18) intron (NM_001352592, intron 2 of 18) 129119 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 190-124 chr3 97490017 97490180 + 2 NA intron (NM_001080448, intron 10 of 17) (AATA)n|Simple_repeat|Simple_repeat 50491 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 239-361 chr7 1339763 1339916 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 106967 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 316-165 chr14 42861476 42861656 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 1254710 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 196-193 chr4 149170612 149170772 + 2 NA intron (NR_125887, intron 2 of 12) intron (NR_125887, intron 2 of 12) 16397 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 406-201 chr4 30767533 30767851 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 47323 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 377-337 chr5 146819853 146820149 + 2 NA intron (NM_001271899, intron 2 of 9) L1MA6|LINE|L1 58784 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 313-457 chr5 169673590 169673818 + 2 NA intron (NR_156756, intron 5 of 52) MER113|DNA|hAT-Charlie 36429 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 157-128 chr8 86762314 86762438 + 2 NA Intergenic MER68|LTR|ERVL -18701 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 174-72 chr20 1171917 1172041 + 2 NA 3' UTR (NM_001323407, exon 7 of 7) 3' UTR (NM_001323407, exon 7 of 7) 12494 NM_018354 55321 Hs.516834 NM_018354 ENSG00000125895 TMEM74B C20orf46 transmembrane protein 74B protein-coding 573-99 chr2 154106970 154107499 + 2 NA intron (NM_052917, intron 3 of 12) MSTB1|LTR|ERVL-MaLR 162840 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 399-339 chrX 67858200 67858548 + 2 NA Intergenic L1MEg|LINE|L1 313751 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 548-18 chr1 237249144 237249616 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 207196 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 274-82 chr11 97072687 97072952 + 2 NA Intergenic L1PA11|LINE|L1 564394 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 247-445 chrX 83966516 83966707 + 2 NA Intergenic L1M2|LINE|L1 105465 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 512-243 chr6 142525701 142526140 + 2 NA TTS (NR_027311) TTS (NR_027311) 111916 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 286-155 chr17 34889479 34889722 + 2 NA Intergenic Intergenic 71860 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 319-532 chr8 86990289 86990529 + 2 NA intron (NM_173538, intron 4 of 10) L1MA3|LINE|L1 123994 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 290-126 chr14 34247420 34247689 + 2 NA Intergenic Intergenic 214686 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 303-58 chr10 108750036 108750253 + 2 NA Intergenic AluY|SINE|Alu -680851 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 367-397 chr6 89039520 89039757 + 2 NA Intergenic LTR47B2|LTR|ERVL -41113 NM_006813 10957 Hs.75969 NM_006813 ENSG00000146278 PNRC1 B4-2|PNAS-145|PROL2|PRR2 proline rich nuclear receptor coactivator 1 protein-coding 400-242 chr4 39369705 39369935 + 2 NA Intergenic AluSx1|SINE|Alu -3458 NM_001363496 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 738-44 chr4 24679773 24680314 + 2 NA Intergenic AluY|SINE|Alu -95489 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 332-118 chr12 30152681 30152997 + 2 NA Intergenic Intergenic -368080 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 254-211 chr2 224483618 224483785 + 2 NA intron (NM_001257197, intron 12 of 14) intron (NM_001257197, intron 12 of 14) -81594 NM_001122779 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 260-415 chr7 104586833 104587072 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 217140 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 400-200 chr22 24712216 24712583 + 2 NA Intergenic Intergenic -52102 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 362-148 chr14 58180626 58180946 + 2 NA Intergenic L1ME4b|LINE|L1 -19363 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 504-75 chr14 88652697 88653036 + 2 NA intron (NM_183387, intron 27 of 42) intron (NM_183387, intron 27 of 42) 58446 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 549-131 chr21 21563344 21563880 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 173707 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 144-68 chr4 71768015 71768127 + 2 NA intron (NM_000583, intron 3 of 12) MIRb|SINE|MIR 16008 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 332-530 chr8 88331571 88331807 + 2 NA Intergenic Intergenic -4206 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 166-22 chr13 53688959 53689086 + 2 NA Intergenic Intergenic -126397 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 302-286 chr3 74167573 74167778 + 2 NA Intergenic Intergenic 353465 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 309-239 chr2 28004924 28005131 + 2 NA intron (NM_199193, intron 5 of 13) intron (NM_199193, intron 5 of 13) 8660 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 251-332 chr6 60708598 60708782 + 2 NA Intergenic Intergenic -865440 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 323-158 chr14 90302618 90302888 + 2 NA exon (NM_017970, exon 6 of 14) exon (NM_017970, exon 6 of 14) 29188 NM_017970 55051 Hs.528131 NM_017970 ENSG00000119720 NRDE2 C14orf102 NRDE-2, necessary for RNA interference, domain containing protein-coding 180-12 chr1 216996072 216996217 + 2 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) -56471 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 309-277 chr2 152881133 152881329 + 2 NA Intergenic L2|LINE|L2 162594 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 371-377 chr8 62379677 62379874 + 2 NA intron (NM_001304533, intron 1 of 6) THE1D|LTR|ERVL-MaLR 130921 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 517-152 chr2 217099820 217100193 + 2 NA Intergenic Intergenic -182727 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 579-51 chr16 87566479 87566899 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -35146 NR_073379 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 353-362 chr4 34016131 34016330 + 2 NA intron (NR_125902, intron 1 of 4) intron (NR_125902, intron 1 of 4) 23663 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 395-221 chr3 74543219 74543556 + 2 NA Intergenic Intergenic -22247 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 369-162 chr18 22594726 22595051 + 2 NA Intergenic L1ME4a|LINE|L1 -176973 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 481-317 chr9 135046717 135047121 + 2 NA Intergenic Intergenic -28586 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 404-335 chr8 137486592 137486876 + 2 NA Intergenic Intergenic -73146 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 301-407 chr6 156194303 156194538 + 2 NA Intergenic L1M8|LINE|L1 -184330 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 195-46 chr12 1907320 1907464 + 2 NA intron (NM_172364, intron 6 of 37).2 intron (NM_172364, intron 6 of 37).2 11260 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 213-233 chr5 58907607 58907797 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 92196 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 436-261 chr6 19959973 19960245 + 2 NA Intergenic Intergenic 122739 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 249-221 chr2 151716613 151716826 + 2 NA intron (NM_001271208, intron 10 of 182) intron (NM_001271208, intron 10 of 182) 17757 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 194-114 chr22 35180607 35180769 + 2 NA intron (NR_126356, intron 2 of 5) intron (NR_126356, intron 2 of 5) 50368 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 341-543 chr8 132240527 132240807 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -135402 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 350-73 chr11 50452442 50452740 + 2 NA Intergenic ALR/Alpha|Satellite|centr 43444 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 200-101 chr17 12877319 12877443 + 2 NA intron (NM_001321164, intron 1 of 20) intron (NM_001321164, intron 1 of 20) 39961 NR_039747 100616494 NR_039747 ENSG00000265503 MIR1269B - microRNA 1269b ncRNA 300-268 chr3 21445277 21445471 + 2 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) 39648 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 637-36 chr14 43152796 43153347 + 2 NA Intergenic MLT2D|LTR|ERVL 1354212 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 239-256 chr3 132813762 132813928 + 2 NA intron (NR_002811, intron 6 of 10) intron (NR_002811, intron 6 of 10) -91386 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 577-179 chr7 29027767 29028266 + 2 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 48049 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 291-354 chr5 66017155 66017374 + 2 NA intron (NM_001253697, intron 7 of 25) L1MA4|LINE|L1 -71691 NR_028474 100303749 Hs.608060 NR_028474 LOC100303749 - LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae) pseudogene pseudo 294-191 chr19 52112174 52112461 + 2 NA TTS (NR_135823) TTS (NR_135823) -16552 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 371-195 chr2 179891827 179892160 + 2 NA Intergenic Intergenic -30381 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 566-19 chr11 3365379 3365858 + 2 NA intron (NR_046381, intron 4 of 6) L1M4c|LINE|L1 13528 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 521-227 chr7 18936178 18936673 + 2 NA intron (NM_058176, intron 22 of 22) MIRb|SINE|MIR 181211 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 258-65 chr11 54965699 54965888 + 2 NA Intergenic ALR/Alpha|Satellite|centr 258961 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 409-134 chr2 22426238 22426585 + 2 NA Intergenic Intergenic -110068 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 252-117 chr14 66110606 66110766 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -375685 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 323-175 chr16 54532306 54532598 + 2 NA Intergenic Intergenic -161753 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 333-606 chr9 90667999 90668325 + 2 NA Intergenic L1M4c|LINE|L1 -25338 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 401-291 chr6 140217775 140218074 + 2 NA Intergenic L1PB4|LINE|L1 12672 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 260-151 chr15 88180072 88180278 + 2 NA intron (NM_001007156, intron 5 of 15) MIR|SINE|MIR 25799 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 238-238 chr3 70650542 70650715 + 2 NA Intergenic L1MA3|LINE|L1 -337990 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 235-373 chr8 125518233 125518430 + 2 NA Intergenic MIRb|SINE|MIR 86122 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 274-387 chr8 83662915 83663108 + 2 NA Intergenic L1M5|LINE|L1 259253 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 307-494 chr8 132367382 132367635 + 2 NA intron (NM_004519, intron 1 of 14) Charlie22a|DNA|hAT-Charlie 79754 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 248-58 chr11 10221703 10221870 + 2 NA intron (NM_030962, intron 1 of 39) L1MEb|LINE|L1 72421 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 207-60 chr11 116664346 116664517 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 25009 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 308-299 chr3 77636769 77637044 + 2 NA intron (NM_001290039, intron 25 of 26) intron (NM_001290039, intron 25 of 26) 412057 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 179-35 chr18 5350967 5351140 + 2 NA Intergenic L1ME3A|LINE|L1 -54000 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 520-304 chr8 118397529 118397920 + 2 NA intron (NM_001349811, intron 3 of 4) MIR|SINE|MIR -223277 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 337-601 chrX 67804880 67805049 + 2 NA Intergenic Intergenic 260341 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 345-567 chrX 82470910 82471116 + 2 NA Intergenic L1MA7|LINE|L1 -1037277 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 283-223 chr2 40742863 40743116 + 2 NA Intergenic Intergenic -230554 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 197-96 chr2 82616414 82616582 + 2 NA Intergenic L1ME2|LINE|L1 -240305 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 304-573 chrX 99026863 99027061 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 1383311 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 337-176 chr15 61616996 61617194 + 2 NA Intergenic L1MB1|LINE|L1 -112823 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 463-137 chr2 60333216 60333548 + 2 NA Intergenic Intergenic 49654 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 344-148 chr15 27707472 27707711 + 2 NA Intergenic Intergenic 391724 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 463-45 chr10 108248069 108248376 + 2 NA Intergenic MER41-int|LTR|ERV1 -178929 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 278-372 chr6 66218727 66218973 + 2 NA Intergenic (TATG)n|Simple_repeat|Simple_repeat 430971 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 772-15 chr12 38098766 38099387 + 2 NA Intergenic L1PA8|LINE|L1 -217698 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 139-81 chr6 89686458 89686543 + 2 NA non-coding (NR_111915, exon 4 of 4) non-coding (NR_111915, exon 4 of 4) -47753 NM_020466 57226 Hs.177275 NM_020466 ENSG00000083099 LYRM2 DJ122O8.2 LYR motif containing 2 protein-coding 342-567 chrX 39281646 39281957 + 2 NA Intergenic L1PA15|LINE|L1 45561 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 333-544 chr7 77488479 77488759 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -48676 NM_002835 5782 Hs.61812 NM_002835 ENSG00000127947 PTPN12 PTP-PEST|PTPG1 protein tyrosine phosphatase non-receptor type 12 protein-coding 262-99 chr12 41020078 41020307 + 2 NA intron (NM_001843, intron 19 of 23) intron (NM_001843, intron 19 of 23) 111835 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 443-308 chr9 80199212 80199634 + 2 NA Intergenic Intergenic 224400 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 335-469 chr6 90318565 90318748 + 2 NA Intergenic AluJr|SINE|Alu 5914 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 235-134 chr17 14413242 14413459 + 2 NA Intergenic MER57A-int|LTR|ERV1 109610 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 350-263 chr2 236956871 236957196 + 2 NA Intergenic Intergenic 99134 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 270-145 chr16 73169538 73169781 + 2 NA Intergenic AluSx3|SINE|Alu -25212 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 521-270 chr9 81044340 81044707 + 2 NA Intergenic Intergenic 645012 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 353-560 chr9 111764380 111764587 + 2 NA intron (NM_173521, intron 3 of 25) HAL1|LINE|L1 -4947 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 278-387 chr7 3357700 3357870 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 56533 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 793-15 chr12 118605255 118605861 + 2 NA Intergenic Intergenic 156121 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 180-105 chr3 28509621 28509742 + 2 NA intron (NM_001040432, intron 6 of 9) L1MB8|LINE|L1 -65597 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 399-119 chr17 60999708 60999956 + 2 NA intron (NM_001330413, intron 15 of 25) L1PA17|LINE|L1 321981 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 409-154 chr2 155614068 155614381 + 2 NA Intergenic Intergenic 640707 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 182-64 chr16 23762186 23762316 + 2 NA Intergenic L1MA5|LINE|L1 7225 NM_022097 63928 Hs.178589 NM_022097 ENSG00000166869 CHP2 - calcineurin like EF-hand protein 2 protein-coding 367-466 chr8 127428043 127428361 + 2 NA intron (NR_117100, intron 4 of 5) L2a|LINE|L2 12377 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 314-602 chr9 28537710 28537961 + 2 NA intron (NM_152570, intron 2 of 6) L1MEd|LINE|L1 181470 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 413-204 chr4 11860722 11861062 + 2 NA Intergenic Intergenic 77714 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 586-95 chr3 4170279 4170758 + 2 NA Intergenic Intergenic -132786 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 399-242 chr5 30855180 30855410 + 2 NA Intergenic Intergenic -338391 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 156-86 chr6 37992195 37992331 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 172536 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 463-24 chr1 169973502 169973828 + 2 NA intron (NM_014970, intron 16 of 19) L1MEd|LINE|L1 -79706 NM_181093 57147 Hs.435560 NM_020423 ENSG00000000457 SCYL3 PACE-1|PACE1 SCY1 like pseudokinase 3 protein-coding 332-584 chrX 45148642 45148961 + 2 NA 3' UTR (NM_176819, exon 5 of 5) 3' UTR (NM_176819, exon 5 of 5) 52075 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 274-128 chr14 62587734 62587886 + 2 NA Intergenic L1ME2z|LINE|L1 -447837 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 487-72 chr13 33393125 33393531 + 2 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -58062 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 464-169 chr3 115311675 115312109 + 2 NA Intergenic L1MB7|LINE|L1 -164604 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 190-126 chr3 145039456 145039582 + 2 NA Intergenic Intergenic 1029666 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 149-44 chr17 70293238 70293346 + 2 NA Intergenic Intergenic 123757 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 312-439 chr5 175094922 175095176 + 2 NA Intergenic L1P3|LINE|L1 -99318 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 203-71 chr15 34704809 34704978 + 2 NA Intergenic MIR|SINE|MIR -49129 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 347-26 chr1 188220453 188220684 + 2 NA Intergenic Intergenic 776940 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 318-159 chr13 56677647 56677923 + 2 NA Intergenic Intergenic -463133 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 639-93 chr5 24273009 24273513 + 2 NA Intergenic AluY|SINE|Alu 321913 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 227-208 chr20 59691581 59691767 + 2 NA intron (NM_001199506, intron 1 of 12) intron (NM_001199506, intron 1 of 12) 15013 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 377-360 chr7 12713092 12713412 + 2 NA Intergenic MER119|DNA|hAT-Charlie 25619 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 333-149 chr14 62520128 62520339 + 2 NA Intergenic L1PA13|LINE|L1 -380260 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 259-269 chr3 179874905 179875140 + 2 NA intron (NR_146167, intron 5 of 13) intron (NR_146167, intron 5 of 13) -23172 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 248-351 chr6 66322134 66322259 + 2 NA Intergenic Intergenic 534317 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 624-48 chr16 56871432 56871847 + 2 NA intron (NM_001126108, intron 6 of 25) L2a|LINE|L2 6432 NM_001126108 6559 Hs.669115 NM_000339 ENSG00000070915 SLC12A3 NCC|NCCT|TSC solute carrier family 12 member 3 protein-coding 548-136 chr21 16935776 16936158 + 2 NA Intergenic L1MA4|LINE|L1 345730 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 307-87 chr11 92817046 92817243 + 2 NA intron (NM_001008781, intron 12 of 24) intron (NM_001008781, intron 12 of 24) 98484 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 793-35 chr4 34937970 34938479 + 2 NA Intergenic MIR|SINE|MIR -668477 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 323-152 chr14 82006444 82006617 + 2 NA Intergenic Intergenic -263392 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 259-351 chr6 120528402 120528603 + 2 NA Intergenic Intergenic 513323 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 283-441 chr8 103928723 103928922 + 2 NA intron (NM_001348507, intron 9 of 21) intron (NM_001348507, intron 9 of 21) 109602 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 239-69 chr12 14380484 14380678 + 2 NA intron (NM_001286515, intron 1 of 12) HAL1|LINE|L1 -4700 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 327-248 chr2 40178698 40178937 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 251487 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 263-394 chr7 45500470 45500672 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -73569 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 324-404 chr4 130071559 130071750 + 2 NA Intergenic Intergenic 300035 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 500-269 chr7 45127195 45127532 + 2 NA Intergenic Intergenic -15616 NM_001261834 9238 Hs.231411 NM_004749 ENSG00000136270 TBRG4 CPR2|FASTKD4 transforming growth factor beta regulator 4 protein-coding 336-48 chr1 240536720 240537018 + 2 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 75286 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 599-119 chr6 147486904 147487472 + 2 NA Intergenic Intergenic -21502 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 287-173 chr18 40730043 40730308 + 2 NA Intergenic L1MEb|LINE|L1 663889 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 532-279 chr8 122590546 122590956 + 2 NA Intergenic Intergenic -22107 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 423-126 chr2 31203177 31203435 + 2 NA intron (NM_001145122, intron 2 of 21) intron (NM_001145122, intron 2 of 21) 14209 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 221-81 chr14 56291550 56291692 + 2 NA intron (NM_021255, intron 5 of 5) L3|LINE|CR1 173210 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 655-59 chr2 97980722 97981188 + 2 NA intron (NM_015348, intron 1 of 40) L1ME1|LINE|L1 14993 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 329-258 chr2 11593022 11593272 + 2 NA intron (NM_014668, intron 11 of 32) CpG 50461 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 527-214 chr5 132561123 132561425 + 2 NA intron (NM_005732, intron 2 of 24) AluSx|SINE|Alu 4297 NM_005732 10111 Hs.633509 NM_005732 ENSG00000113522 RAD50 NBSLD|RAD502|hRad50 RAD50 double strand break repair protein protein-coding 268-153 chr17 67537005 67537190 + 2 NA intron (NM_181671, intron 2 of 9) L1ME3Cz|LINE|L1 -65512 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 209-74 chr12 83776537 83776700 + 2 NA Intergenic Intergenic 1089463 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 311-458 chr7 11718071 11718339 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 113993 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 427-158 chr3 70349429 70349796 + 2 NA Intergenic Intergenic -36974 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 470-29 chr10 82209033 82209444 + 2 NA intron (NM_001165973, intron 2 of 10) intron (NM_001165973, intron 2 of 10) 23682 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 350-199 chr19 27567059 27567260 + 2 NA Intergenic ALR/Alpha|Satellite|centr -226272 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 273-477 chrX 39626395 39626629 + 2 NA Intergenic L1MA7|LINE|L1 -34704 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 232-311 chr5 103448479 103448636 + 2 NA Intergenic MIR|SINE|MIR 93428 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 367-270 chr22 47253536 47253893 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -91857 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 706-61 chr5 141430097 141430663 + 2 NA promoter-TSS (NM_003735) promoter-TSS (NM_003735) -127 NM_003735 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 345-6 chr1 31861380 31861699 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -45488 NM_144569 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 243-58 chr10 93626540 93626712 + 2 NA intron (NM_006204, intron 5 of 21) intron (NM_006204, intron 5 of 21) 14089 NM_006204 5146 Hs.658121 NM_006204 ENSG00000095464 PDE6C ACHM5|COD4|PDEA2 phosphodiesterase 6C protein-coding 288-307 chr4 123499632 123499916 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 100234 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 304-454 chr6 23620629 23620842 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -505480 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 233-98 chr14 66483658 66483874 + 2 NA Intergenic Intergenic -2605 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 267-165 chr19 36625744 36625996 + 2 NA intron (NM_001256838, intron 4 of 4) intron (NM_001256838, intron 4 of 4) 20557 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 282-222 chr2 122540545 122540736 + 2 NA Intergenic Intergenic 532841 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 303-210 chr2 63064342 63064524 + 2 NA Intergenic L2a|LINE|L2 13603 NR_130153 5013 Hs.734360 NM_014562 ENSG00000115507 OTX1 - orthodenticle homeobox 1 protein-coding 309-366 chr3 156991590 156991826 + 2 NA intron (NM_001004316, intron 7 of 12) L1MEb|LINE|L1 -90133 NR_135546 105374177 Hs.634263 NR_135546 ENSG00000241544 LINC02029 - long intergenic non-protein coding RNA 2029 ncRNA 419-6 chr1 52578832 52579044 + 2 NA Intergenic FLAM_A|SINE|Alu -23433 NM_015696 2882 Hs.43728 NM_015696 ENSG00000116157 GPX7 CL683|GPX6|GPx-7|GSHPx-7|NPGPx glutathione peroxidase 7 protein-coding 322-108 chr11 130827189 130827475 + 2 NA Intergenic Intergenic 34778 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 933-20 chr2 77960103 77960829 + 2 NA intron (NR_110288, intron 1 of 3) AluSc8|SINE|Alu -5440 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 363-190 chr18 73762366 73762683 + 2 NA Intergenic Intergenic 385310 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 358-358 chr5 11518679 11518970 + 2 NA intron (NM_001288715, intron 2 of 20) Tigger3b|DNA|TcMar-Tigger 70093 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 716-13 chr10 57777808 57778485 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -473587 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 361-434 chr8 38698578 38698883 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -29456 NR_148053 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 480-14 chr1 111004279 111004621 + 2 NA Intergenic Intergenic -40506 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 267-197 chr2 109558424 109558590 + 2 NA intron (NM_001321513, intron 8 of 9) intron (NM_001321513, intron 8 of 9) 55160 NM_001321515 151011 Hs.469615 NM_144710 ENSG00000186522 SEPTIN10 SEPT10 septin 10 protein-coding 247-132 chr15 85426678 85426903 + 2 NA intron (NM_007200, intron 1 of 36) intron (NM_007200, intron 1 of 36) 46187 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 550-28 chr10 39320681 39321092 + 2 NA Intergenic ALR/Alpha|Satellite|centr 624290 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 420-82 chr14 71555535 71555804 + 2 NA intron (NM_001354289, intron 5 of 23) Tigger1|DNA|TcMar-Tigger -30629 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 281-79 chr12 13302842 13303089 + 2 NA Intergenic L1ME3A|LINE|L1 73780 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 383-46 chr11 20579300 20579615 + 2 NA Intergenic Intergenic -19943 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 231-98 chr14 72080382 72080525 + 2 NA intron (NM_001370288, intron 2 of 16) L1MA8|LINE|L1 146926 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 380-156 chr17 72675440 72675812 + 2 NA intron (NM_001352692, intron 7 of 9) intron (NM_001352692, intron 7 of 9) -35154 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 246-190 chr2 50804222 50804435 + 2 NA intron (NM_001330093, intron 4 of 22) MIRb|SINE|MIR -108066 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 294-332 chr4 57317686 57317865 + 2 NA Intergenic Intergenic -108097 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 334-459 chr6 49257485 49257764 + 2 NA Intergenic Intergenic 205629 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 865-51 chr9 138123669 138124295 + 2 NA 3' UTR (NM_000718, exon 46 of 46) 3' UTR (NM_000718, exon 46 of 46) -26131 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 219-310 chr6 55375548 55375704 + 2 NA intron (NM_207410, intron 6 of 8) L1P3|LINE|L1 48157 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 241-93 chr12 128048393 128048629 + 2 NA Intergenic Intergenic -21345 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 241-153 chr18 4536450 4536616 + 2 NA Intergenic Intergenic -81226 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 227-98 chr13 70205929 70206102 + 2 NA Intergenic MIR|SINE|MIR -97522 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 483-268 chr8 90738446 90738735 + 2 NA Intergenic HAL1|LINE|L1 -53185 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 228-194 chr20 58049913 58050117 + 2 NA Intergenic L1MB7|LINE|L1 46111 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 440-238 chr7 97316122 97316528 + 2 NA Intergenic Intergenic 199732 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 407-100 chr16 51265409 51265667 + 2 NA intron (NR_039672, intron 6 of 6) MLT1D|LTR|ERVL-MaLR -114266 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 301-232 chr2 163079907 163080067 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -241220 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 411-281 chr7 134121147 134121452 + 2 NA Intergenic Intergenic -6041 NM_001365700 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 373-171 chr18 70092188 70092435 + 2 NA intron (NM_001318520, intron 28 of 47) intron (NM_001318520, intron 28 of 47) 113376 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 340-571 chr9 102605199 102605373 + 2 NA intron (NR_103830, intron 3 of 4) L1PA12|LINE|L1 85649 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 516-54 chr12 112692399 112692812 + 2 NA intron (NM_001347952, intron 1 of 21) MIRb|SINE|MIR 2571 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 327-21 chr1 177167541 177167795 + 2 NA Intergenic L1ME3|LINE|L1 -2764 NM_001286164 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 315-464 chr8 31333097 31333369 + 2 NA Intergenic L1M4c|LINE|L1 -299877 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 335-311 chr21 20107797 20108113 + 2 NA Intergenic Intergenic 150730 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 357-189 chr2 37457854 37458090 + 2 NA Intergenic MIRb|SINE|MIR 113342 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 204-167 chr20 51293994 51294140 + 2 NA Intergenic L1ME4a|LINE|L1 158910 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 397-91 chr14 59670672 59670985 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -23808 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 477-158 chr2 103371097 103371456 + 2 NA Intergenic Intergenic -386847 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 238-69 chr11 62142378 62142607 + 2 NA intron (NM_001040694, intron 11 of 18) intron (NM_001040694, intron 11 of 18) 18481 NM_020238 3619 Hs.142179 NM_020238 ENSG00000149503 INCENP - inner centromere protein protein-coding 295-485 chr8 131540128 131540315 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -363872 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 239-298 chr5 7765050 7765221 + 2 NA intron (NM_020546, intron 16 of 24) intron (NM_020546, intron 16 of 24) 85998 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 322-189 chr16 55067998 55068190 + 2 NA Intergenic HAL1|LINE|L1 136895 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 276-197 chr18 4371474 4371711 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 83674 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 541-153 chr3 64886473 64886919 + 2 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -198696 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 568-180 chr7 3084494 3084845 + 2 NA Intergenic LTR1A1|LTR|ERV1 -40802 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 241-258 chr4 33636359 33636546 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 403441 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 134-14 chr10 111525495 111525574 + 2 NA Intergenic Intergenic 411243 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 379-221 chr3 135267315 135267618 + 2 NA Intergenic Intergenic 472206 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 282-192 chr2 12608310 12608522 + 2 NA Intergenic Intergenic -108456 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 125-64 chr7 54175841 54175912 + 2 NA Intergenic Intergenic -154821 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 268-243 chr3 82414538 82414720 + 2 NA intron (NR_147146, intron 3 of 8) intron (NR_147146, intron 3 of 8) 428487 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 374-309 chr5 55212130 55212435 + 2 NA Intergenic AluSz|SINE|Alu 15033 NM_001190787 345643 Hs.394578 NM_001190787 ENSG00000234602 MCIDAS IDAS|MCI|MCIN multiciliate differentiation and DNA synthesis associated cell cycle protein protein-coding 520-247 chr5 131848990 131849388 + 2 NA intron (NM_001303622, intron 11 of 12) MSTA|LTR|ERVL-MaLR -52172 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 735-85 chr8 138263076 138263767 + 2 NA intron (NM_015912, intron 4 of 19) LTR33|LTR|ERVL -179876 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 232-231 chr3 4151439 4151598 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -151786 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 318-375 chr3 163859273 163859483 + 2 NA Intergenic L1MEi|LINE|L1 312178 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 252-135 chr15 97997849 97998028 + 2 NA Intergenic Intergenic -5100 NR_146565 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 272-98 chr12 107748700 107748914 + 2 NA intron (NM_012406, intron 5 of 11) L1MB7|LINE|L1 12252 NR_120474 101929162 Hs.667028 NR_120474 ENSG00000258136 LOC101929162 - uncharacterized LOC101929162 ncRNA 520-13 chr1 103051864 103052337 + 2 NA intron (NM_001854, intron 4 of 66) intron (NM_001854, intron 4 of 66) 56396 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 308-486 chr8 63071051 63071219 + 2 NA intron (NM_000370, intron 2 of 4) intron (NM_000370, intron 2 of 4) 14918 NM_000370 7274 Hs.69049 NM_000370 ENSG00000137561 TTPA ATTP|AVED|TTP1|alphaTTP alpha tocopherol transfer protein protein-coding 415-233 chr6 43945524 43945896 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 54682 NR_024478 100132354 Hs.376232 NR_024478 LINC01512 HI-LNC77 long intergenic non-protein coding RNA 1512 ncRNA 364-398 chr6 153818922 153819259 + 2 NA Intergenic Intergenic -191406 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 189-47 chr13 39109068 39109242 + 2 NA Intergenic L2c|LINE|L2 70699 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 389-71 chr11 116028675 116028953 + 2 NA Intergenic L1PB1|LINE|L1 -268614 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 268-260 chr3 178816387 178816595 + 2 NA intron (NM_181361, intron 2 of 4) L1ME3D|LINE|L1 43914 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 358-283 chr22 47179680 47179889 + 2 NA Intergenic L1ME3A|LINE|L1 -165787 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 681-89 chr9 101752412 101752977 + 2 NA Intergenic Intergenic -14114 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 255-380 chr7 35590107 35590352 + 2 NA Intergenic Intergenic 104906 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 659-45 chr18 72329585 72330098 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 214501 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 169-99 chr5 85018973 85019097 + 2 NA Intergenic L1M5|LINE|L1 -634155 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 235-3 chr1 13933561 13933729 + 2 NA Intergenic L2b|LINE|L2 184230 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 195-109 chr2 123585713 123585853 + 2 NA Intergenic Intergenic 439391 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 407-213 chr3 181304220 181304569 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 72657 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 322-88 chr11 45543445 45543652 + 2 NA Intergenic Intergenic 122074 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 238-258 chr4 35952988 35953129 + 2 NA Intergenic L1PA15|LINE|L1 290881 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 466-221 chr6 33895059 33895355 + 2 NA intron (NR_038989, intron 1 of 2) intron (NR_038989, intron 1 of 2) 1700 NR_038989 100507584 Hs.547104 NR_038989 ENSG00000249346 LINC01016 - long intergenic non-protein coding RNA 1016 ncRNA 459-316 chr8 138215501 138215854 + 2 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -132132 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 192-155 chr4 175957759 175957922 + 2 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) 44851 NR_048571 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 319-90 chr11 71562957 71563188 + 2 NA Intergenic L1MA5|LINE|L1 -2491 NM_001012710 387273 Hs.661887 NM_001012710 ENSG00000204572 KRTAP5-10 KRTAP5.10 keratin associated protein 5-10 protein-coding 384-8 chr1 75098161 75098494 + 2 NA Intergenic Intergenic -30107 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 300-317 chr4 47863078 47863269 + 2 NA intron (NR_103795, intron 19 of 23) intron (NR_103795, intron 19 of 23) -25067 NM_001278585 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 289-114 chr12 83572310 83572504 + 2 NA Intergenic Intergenic 885252 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 148-76 chr6 11278741 11278851 + 2 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) -46114 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 631-26 chr11 91386278 91386640 + 2 NA Intergenic Intergenic -517257 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 244-217 chr3 23513154 23513368 + 2 NA intron (NM_001370225, intron 4 of 5) L1ME4b|LINE|L1 -292694 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 310-6 chr1 67110825 67111013 + 2 NA intron (NM_001276352, intron 6 of 8) (AT)n|Simple_repeat|Simple_repeat 24051 NM_001276352 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 151-70 chr6 63907852 63907967 + 2 NA intron (NM_001292009, intron 35 of 43) L1PB4|LINE|L1 101073 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 626-149 chr9 74352967 74353439 + 2 NA Intergenic L1ME1|LINE|L1 -18328 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 201-55 chr12 14298106 14298258 + 2 NA Intergenic HERVL-int|LTR|ERVL -67450 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 211-94 chr15 50167835 50168033 + 2 NA Intergenic Intergenic -14262 NM_003645 11001 Hs.11729 NM_003645 ENSG00000140284 SLC27A2 ACSVL1|FACVL1|FATP2|HsT17226|VLACS|VLCS|hFACVL1 solute carrier family 27 member 2 protein-coding 253-148 chr16 51561535 51561720 + 2 NA Intergenic AluSx|SINE|Alu -200892 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 186-65 chr18 12989755 12989895 + 2 NA Intergenic Intergenic -1537 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 216-351 chr9 93765658 93765803 + 2 NA Intergenic L1MC3|LINE|L1 -53627 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 275-296 chr5 128285758 128285963 + 2 NA intron (NM_001999, intron 55 of 64) intron (NM_001999, intron 55 of 64) 202094 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 321-69 chr10 83793251 83793523 + 2 NA Intergenic L1MA4|LINE|L1 -116298 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 255-350 chr6 33565150 33565346 + 2 NA Intergenic LTR54|LTR|ERV1 15028 NM_001188 578 Hs.485139 NM_001188 ENSG00000030110 BAK1 BAK|BAK-LIKE|BCL2L7|CDN1 BCL2 antagonist/killer 1 protein-coding 544-226 chr8 104562692 104563058 + 2 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 26149 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 368-332 chr4 65819541 65819906 + 2 NA Intergenic L1MA9|LINE|L1 -149228 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 356-483 chr8 105472204 105472493 + 2 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 152805 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 244-166 chr2 79150784 79151013 + 2 NA Intergenic L1PA15|LINE|L1 8855 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 296-448 chr7 119332370 119332603 + 2 NA Intergenic L2|LINE|L2 574889 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 355-444 chr6 140524738 140525028 + 2 NA Intergenic L3|LINE|CR1 -158931 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 472-200 chr22 30173963 30174412 + 2 NA intron (NM_001329457, intron 11 of 11) intron (NM_001329457, intron 11 of 11) -65007 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 407-154 chr2 161021105 161021450 + 2 NA Intergenic L1MB5|LINE|L1 -115678 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 246-416 chr8 121014016 121014171 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -202047 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 239-199 chr2 180769256 180769474 + 2 NA intron (NR_104324, intron 3 of 4) L1MD|LINE|L1 77261 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 420-201 chr4 69975291 69975573 + 2 NA Intergenic L1PA15|LINE|L1 -14421 NM_001891 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 308-189 chr17 69438822 69438999 + 2 NA intron (NM_002758, intron 1 of 11) MER58B|DNA|hAT-Charlie 24213 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 294-492 chr9 32683845 32684086 + 2 NA Intergenic L1MA1|LINE|L1 -48296 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 542-35 chr11 36975836 36976301 + 2 NA Intergenic Intergenic -377789 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 487-123 chr19 9568253 9568720 + 2 NA intron (NM_001308269, intron 2 of 4) AluSx1|SINE|Alu 16018 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 208-161 chr3 19570016 19570135 + 2 NA Intergenic Intergenic -255144 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 233-317 chr5 165548107 165548260 + 2 NA Intergenic MER53|DNA|hAT 1077904 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 349-151 chr14 31731260 31731530 + 2 NA intron (NM_001201574, intron 1 of 5) intron (NM_001201574, intron 1 of 5) 16826 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 319-385 chr4 91953850 91954030 + 2 NA Intergenic L1ME1|LINE|L1 323362 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 373-147 chr16 76392388 76392718 + 2 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 82701 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 146-83 chr7 8376345 8376433 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -57220 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 181-106 chr4 59189744 59189871 + 2 NA Intergenic Intergenic 176234 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 298-382 chr5 150948546 150948761 + 2 NA Intergenic Intergenic -2069 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 154-94 chr6 63796528 63796636 + 2 NA intron (NM_001292009, intron 37 of 43) intron (NM_001292009, intron 37 of 43) -10254 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 616-108 chr3 88347486 88347978 + 2 NA intron (NM_001368167, intron 2 of 2) Tigger1|DNA|TcMar-Tigger 9276 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 533-76 chr17 54266061 54266518 + 2 NA Intergenic Intergenic 443362 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 259-98 chr13 66004349 66004526 + 2 NA Intergenic Intergenic -38008 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 202-236 chr7 24670100 24670248 + 2 NA intron (NM_016447, intron 10 of 12) intron (NM_016447, intron 10 of 12) 87290 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 176-122 chr6 57027551 57027716 + 2 NA TTS (NM_152731) TTS (NM_152731) -18899 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 297-238 chr2 175248823 175248998 + 2 NA Intergenic Intergenic -67200 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 383-385 chr8 86634570 86634824 + 2 NA intron (NM_019098, intron 10 of 17) intron (NM_019098, intron 10 of 17) 108978 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 277-250 chr3 34444472 34444641 + 2 NA Intergenic L1PA12|LINE|L1 645926 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 296-73 chr11 24736225 24736489 + 2 NA intron (NM_001009909, intron 3 of 11) intron (NM_001009909, intron 3 of 11) 239304 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 253-82 chr11 97275246 97275459 + 2 NA Intergenic L1M2|LINE|L1 766927 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 338-16 chr1 96911244 96911498 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -184552 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 245-168 chr18 61362227 61362464 + 2 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 28915 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 403-147 chr19 56534584 56534880 + 2 NA Intergenic L1MEf|LINE|L1 -4216 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 255-427 chr8 98674586 98674800 + 2 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 150978 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 356-102 chr12 23287997 23288223 + 2 NA Intergenic Intergenic 112474 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 867-4 chr1 78711512 78712366 + 2 NA Intergenic Intergenic 62108 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 536-165 chr3 101976459 101976871 + 2 NA intron (NR_026934, intron 2 of 3) intron (NR_026934, intron 2 of 3) 35806 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 156-8 chr1 227604016 227604144 + 2 NA intron (NR_102302, intron 2 of 5) L1MB7|LINE|L1 40524 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 280-62 chr10 121013582 121013763 + 2 NA Intergenic L1MC1|LINE|L1 162310 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 326-372 chr4 60457778 60458040 + 2 NA Intergenic Intergenic -464710 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 548-35 chr11 28850693 28851224 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -373410 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 346-72 chr11 58595434 58595721 + 2 NA intron (NM_001197051, intron 2 of 10) AluSz|SINE|Alu 16463 NR_024091 386607 Hs.524920 NM_170768 ZFP91-CNTF ZFP91|ZNF757|Zfp-91 ZFP91-CNTF readthrough (NMD candidate) ncRNA 271-126 chr14 42580234 42580498 + 2 NA Intergenic Intergenic 973510 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 464-11 chr1 194182998 194183297 + 2 NA Intergenic Intergenic 878402 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 358-365 chr5 44698530 44698767 + 2 NA Intergenic Intergenic 110145 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 337-23 chr1 153196447 153196742 + 2 NA Intergenic Intergenic -6836 NM_001010857 149018 Hs.125785 NM_001010857 ENSG00000203784 LELP1 - late cornified envelope like proline rich 1 protein-coding 402-89 chr14 79469967 79470324 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 190765 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 344-84 chr11 98186034 98186300 + 2 NA Intergenic LTR37B|LTR|ERV1 -834782 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 600-110 chr6 110280228 110280650 + 2 NA intron (NM_001123364, intron 4 of 4) L1ME4b|LINE|L1 49619 NM_001354595 728464 Hs.634429 NM_001123364 ENSG00000053328 METTL24 C6orf186 methyltransferase like 24 protein-coding 425-330 chrX 78928226 78928579 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -16930 NM_198333 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 604-17 chr10 56757530 56757940 + 2 NA Intergenic Intergenic -396462 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 251-10 chr1 97050179 97050395 + 2 NA Intergenic Intergenic -45636 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 450-200 chr3 95581528 95581843 + 2 NA Intergenic Intergenic 101508 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 302-171 chr17 57220268 57220455 + 2 NA Intergenic L1MC1|LINE|L1 -35490 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 247-35 chr10 29296710 29296953 + 2 NA intron (NM_032517, intron 3 of 4) HAL1|LINE|L1 7761 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 433-78 chr14 63471650 63471888 + 2 NA intron (NM_001354926, intron 2 of 2) intron (NM_001354926, intron 2 of 2) 36469 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 380-336 chr6 47808469 47808767 + 2 NA intron (NR_033806, intron 5 of 6) intron (NR_033806, intron 5 of 6) 21550 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 140-33 chr18 26922912 26923010 + 2 NA intron (NM_001256316, intron 4 of 4) intron (NM_001256316, intron 4 of 4) -57158 NM_001317387 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 379-92 chr14 62519625 62519940 + 2 NA Intergenic L1PA13|LINE|L1 -379809 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 329-356 chr3 34583463 34583722 + 2 NA Intergenic Intergenic 784962 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 383-352 chr7 35352407 35352788 + 2 NA intron (NR_038864, intron 2 of 2) MER5A1|DNA|hAT-Charlie 38742 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 210-10 chr1 103332767 103332905 + 2 NA Intergenic MER33|DNA|hAT-Charlie 192675 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 421-199 chr3 189740946 189741265 + 2 NA intron (NM_003722, intron 3 of 13) intron (NM_003722, intron 3 of 13) -48554 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 280-218 chr2 154118330 154118533 + 2 NA intron (NM_052917, intron 3 of 12) L1MA7|LINE|L1 174037 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 381-110 chr14 92245540 92245752 + 2 NA Intergenic AluSx|SINE|Alu -76935 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 194-24 chr10 99130067 99130240 + 2 NA intron (NM_021828, intron 3 of 11) L1PB1|LINE|L1 105722 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 216-200 chr21 19863383 19863537 + 2 NA Intergenic Intergenic 36295 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 482-287 chr8 138209484 138209816 + 2 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -126105 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 620-116 chr6 36155313 36155758 + 2 NA Intergenic L1M4a2|LINE|L1 25022 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 276-136 chr14 19887557 19887778 + 2 NA Intergenic L1PB4|LINE|L1 11399 NM_001005501 390431 Hs.551345 NM_001005501 ENSG00000165762 OR4K2 OR14-15 olfactory receptor family 4 subfamily K member 2 protein-coding 486-314 chr9 101697794 101698266 + 2 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 40550 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 178-164 chrX 99533965 99534099 + 2 NA Intergenic Intergenic 876241 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 284-367 chr7 7681590 7681867 + 2 NA intron (NM_001302350, intron 3 of 4) intron (NM_001302350, intron 3 of 4) 36879 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 189-73 chr17 79225012 79225184 + 2 NA intron (NM_001350453, intron 3 of 13) intron (NM_001350453, intron 3 of 13) 150161 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 423-215 chr5 23901874 23902181 + 2 NA Intergenic ALR/Alpha|Satellite|centr -49321 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 407-202 chr3 98484765 98485070 + 2 NA Intergenic Intergenic -12764 NM_001004737 402135 Hs.632558 NM_001004737 ENSG00000231861 OR5K2 OR3-9 olfactory receptor family 5 subfamily K member 2 protein-coding 299-98 chr12 23603986 23604170 + 2 NA intron (NM_152989, intron 12 of 17) L2c|LINE|L2 -19492 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 236-221 chr3 59792639 59792807 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -134226 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 396-51 chr10 63858694 63858954 + 2 NA Intergenic Intergenic -336934 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 336-183 chr15 95821569 95821759 + 2 NA Intergenic Intergenic 306177 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 440-81 chr16 9390987 9391423 + 2 NA intron (NR_135195, intron 1 of 2) intron (NR_135195, intron 1 of 2) 35617 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 207-198 chr3 114007326 114007470 + 2 NA intron (NR_148531, intron 7 of 14) intron (NR_148531, intron 7 of 14) 49128 NM_020817 57577 Hs.477159 NM_020817 ENSG00000163617 CCDC191 KIAA1407 coiled-coil domain containing 191 protein-coding 380-69 chr11 84688696 84688917 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 32136 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 425-6 chr1 90472527 90472931 + 2 NA Intergenic L2c|LINE|L2 -185021 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 220-71 chr11 100773445 100773563 + 2 NA intron (NM_001367945, intron 2 of 25) intron (NM_001367945, intron 2 of 25) -85549 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 558-237 chrX 77243557 77243937 + 2 NA Intergenic L1M3|LINE|L1 -203642 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 339-14 chr1 63761511 63761708 + 2 NA Intergenic L1ME1|LINE|L1 -12408 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 330-370 chr4 10689775 10689954 + 2 NA Intergenic Intergenic -5096 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 307-190 chr17 68653014 68653245 + 2 NA intron (NR_110825, intron 2 of 4) intron (NR_110825, intron 2 of 4) 24975 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 226-358 chr8 122150723 122150874 + 2 NA Intergenic Intergenic 417846 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 292-235 chr2 160908807 160908987 + 2 NA Intergenic Intergenic -228058 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 510-231 chr5 103797369 103797698 + 2 NA Intergenic LTR49-int|LTR|ERV1 -234744 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 240-216 chr2 76857613 76857847 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -128235 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 436-129 chr2 52225059 52225305 + 2 NA intron (NR_135237, intron 7 of 10) MIRb|SINE|MIR -145466 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 366-100 chr12 43111641 43111958 + 2 NA Intergenic Intergenic -43516 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 538-225 chr7 116314829 116315274 + 2 NA Intergenic Intergenic -28324 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 313-188 chr16 73933553 73933771 + 2 NA Intergenic L1MEd|LINE|L1 281859 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 448-215 chr5 86371490 86371867 + 2 NA Intergenic L1MEg|LINE|L1 89234 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 227-406 chr9 116079718 116079877 + 2 NA Intergenic Intergenic -73994 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 249-77 chr11 79731243 79731433 + 2 NA Intergenic Intergenic -290308 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 327-124 chr12 104232626 104232818 + 2 NA intron (NM_001093771, intron 1 of 16) HUERS-P3b-int|LTR|ERV1 16943 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 356-406 chr5 111639572 111639806 + 2 NA intron (NR_040093, intron 1 of 6) THE1C-int|LTR|ERVL-MaLR 116562 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 496-66 chr13 68910727 68911036 + 2 NA Intergenic L1PA17|LINE|L1 -25556 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 368-166 chr15 98197439 98197670 + 2 NA Intergenic Intergenic -108801 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 310-363 chr4 38628340 38628548 + 2 NA intron (NR_026804, intron 3 of 7) AluSx|SINE|Alu -35755 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 496-115 chr18 4872181 4872538 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -208823 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 345-95 chr11 90954646 90954896 + 2 NA Intergenic MER41C|LTR|ERV1 -85569 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 257-458 chrX 138103708 138103958 + 2 NA Intergenic L1PB4|LINE|L1 537706 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 339-83 chr10 131196653 131196875 + 2 NA intron (NM_174937, intron 4 of 11) intron (NM_174937, intron 4 of 11) 101546 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 248-109 chr14 44401456 44401685 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 105713 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 232-136 chr17 71423125 71423269 + 2 NA Intergenic L1ME3Cz|LINE|L1 -221018 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 250-318 chr4 100226251 100226434 + 2 NA Intergenic Intergenic -35874 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 239-184 chr2 125280666 125280870 + 2 NA Intergenic MIRb|SINE|MIR 837217 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 291-199 chr19 51889703 51889970 + 2 NA 3' UTR (NM_023074, exon 5 of 5) 3' UTR (NM_023074, exon 5 of 5) 1811 NR_110733 101928571 Hs.553920 NR_110733 ENSG00000268095 ZNF649-AS1 - ZNF649 antisense RNA 1 ncRNA 424-133 chr2 105509426 105509783 + 2 NA Intergenic Intergenic -71091 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 335-535 chr8 84845146 84845417 + 2 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 139354 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 285-352 chr5 122222284 122222488 + 2 NA Intergenic L1MA9|LINE|L1 62210 NM_001195535 100505841 Hs.733368 NM_001195535 LOC100505841 - zinc finger protein 474-like protein-coding 349-421 chr5 107438686 107439030 + 2 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 232079 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 379-275 chr5 115034411 115034742 + 2 NA Intergenic L3|LINE|CR1 135332 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 247-365 chr6 124481228 124481357 + 2 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 198287 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 377-219 chr2 134684142 134684383 + 2 NA intron (NM_030923, intron 2 of 7) L2c|LINE|L2 34738 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 370-365 chr5 13751771 13752068 + 2 NA intron (NM_001369, intron 64 of 78) LTR52|LTR|ERVL 192561 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 501-234 chr7 10305684 10306058 + 2 NA Intergenic L2a|LINE|L2 -396805 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 362-10 chr1 52447060 52447301 + 2 NA intron (NM_001009881, intron 20 of 29) AluSx3|SINE|Alu 42578 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 290-220 chr2 129484284 129484560 + 2 NA Intergenic Intergenic -210531 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 360-229 chr2 122412977 122413234 + 2 NA Intergenic Intergenic 657454 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 604-54 chr16 5344290 5344854 + 2 NA Intergenic Intergenic -246752 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 370-38 chr10 32526222 32526428 + 2 NA intron (NR_109826, intron 11 of 16) L1MA2|LINE|L1 80185 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 481-81 chr13 87090398 87090781 + 2 NA Intergenic Intergenic 178669 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 184-126 chr4 120500325 120500455 + 2 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 422476 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 345-146 chr14 39612184 39612515 + 2 NA Intergenic L2c|LINE|L2 -179849 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 189-7 chr1 172473985 172474127 + 2 NA Intergenic Intergenic 21163 NM_001300760 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 389-42 chr10 89839484 89839793 + 2 NA non-coding (NR_038382, exon 4 of 4) non-coding (NR_038382, exon 4 of 4) 10145 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 341-205 chr18 7832169 7832483 + 2 NA intron (NM_002845, intron 2 of 30) L1MA2|LINE|L1 265010 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 152-79 chr5 114396346 114396463 + 2 NA intron (NM_001278204, intron 2 of 6) intron (NM_001278204, intron 2 of 6) 34085 NM_001278204 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 412-210 chr3 83505738 83506099 + 2 NA Intergenic L1MA2|LINE|L1 1363657 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 494-46 chr12 11987567 11987888 + 2 NA Intergenic L1MC4a|LINE|L1 -62134 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 301-69 chr11 72957888 72958145 + 2 NA intron (NM_014824, intron 8 of 19) intron (NM_014824, intron 8 of 19) 143605 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 301-117 chr14 46692305 46692554 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -40648 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 409-228 chr4 134640057 134640306 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 216313 NR_147155 105377434 Hs.738318 NR_147155 LINC02462 - long intergenic non-protein coding RNA 2462 ncRNA 344-365 chr4 123321235 123321529 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -75413 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 563-196 chr9 91929199 91929578 + 2 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 20840 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 158-90 chr5 23440802 23440903 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -66757 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 429-277 chr7 71760148 71760444 + 2 NA Intergenic L1MA9|LINE|L1 -452526 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 379-46 chr10 111135435 111135666 + 2 NA Intergenic L1PA16|LINE|L1 21259 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 341-34 chr1 172259668 172259891 + 2 NA intron (NR_146559, intron 16 of 20) L1MA4A|LINE|L1 -114944 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 260-284 chr3 113591357 113591503 + 2 NA intron (NR_136285, intron 7 of 20) L1MB7|LINE|L1 -3446 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 293-126 chr14 88288965 88289155 + 2 NA intron (NM_021161, intron 1 of 6) intron (NM_021161, intron 1 of 6) -18149 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 427-196 chr4 182399248 182399539 + 2 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 155991 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 552-162 chr4 133413324 133413731 + 2 NA Intergenic AluSx1|SINE|Alu 264233 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 269-133 chr15 49507501 49507680 + 2 NA intron (NM_001330293, intron 10 of 10) intron (NM_001330293, intron 10 of 10) 84348 NM_002009 2252 Hs.567268 NM_002009 ENSG00000140285 FGF7 HBGF-7|KGF fibroblast growth factor 7 protein-coding 436-97 chr16 17051179 17051535 + 2 NA Intergenic L1PA16|LINE|L1 -83147 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 318-596 chrX 152244885 152245153 + 2 NA intron (NM_000808, intron 5 of 9) intron (NM_000808, intron 5 of 9) -106441 NM_001011543 4109 Hs.18048 NM_021048 ENSG00000124260 MAGEA10 CT1.10|MAGE10 MAGE family member A10 protein-coding 293-459 chr8 129392664 129392939 + 2 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 91341 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 439-168 chr21 31433111 31433493 + 2 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -88948 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 436-28 chr10 33874813 33875118 + 2 NA Intergenic L1MA5A|LINE|L1 -102285 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 348-313 chr3 103947075 103947343 + 2 NA Intergenic L1MCc|LINE|L1 -423093 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 311-454 chr6 163256829 163257097 + 2 NA intron (NM_001080379, intron 4 of 4) MLT1C|LTR|ERVL-MaLR -64961 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 373-19 chr1 97316899 97317183 + 2 NA intron (NR_046590, intron 4 of 4) intron (NR_046590, intron 4 of 4) 221118 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 351-329 chr3 198012109 198012289 + 2 NA intron (NR_026786, intron 12 of 16) AluSx1|SINE|Alu 27268 NR_046669 100873947 Hs.637166 NR_046669 ENSG00000232832 LMLN-AS1 - LMLN antisense RNA 1 ncRNA 192-91 chr18 77522698 77522833 + 2 NA Intergenic Intergenic 272917 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 231-54 chr11 30234629 30234819 + 2 NA 3' UTR (NM_001018080, exon 3 of 3) 3' UTR (NM_001018080, exon 3 of 3) 3710 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 446-322 chr8 142918801 142919134 + 2 NA Intergenic AluSx|SINE|Alu -1124 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 465-172 chr3 77609808 77610102 + 2 NA intron (NM_001290039, intron 22 of 26) intron (NM_001290039, intron 22 of 26) 439008 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 301-103 chr13 54523814 54524059 + 2 NA Intergenic MIR|SINE|MIR -211888 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 315-143 chr15 26904215 26904376 + 2 NA intron (NM_001165037, intron 6 of 10) L1PREC2|LINE|L1 37169 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 191-187 chr6 81181090 81181191 + 2 NA Intergenic Intergenic 571541 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 305-379 chr4 46136064 46136343 + 2 NA Intergenic L1PA15|LINE|L1 -12149 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 260-429 chr8 66164097 66164238 + 2 NA intron (NM_033058, intron 10 of 10) intron (NM_033058, intron 10 of 10) 14297 NM_000756 1392 Hs.75294 NM_000756 ENSG00000147571 CRH CRF|CRH1 corticotropin releasing hormone protein-coding 508-134 chr21 14200491 14200902 + 2 NA intron (NM_001303000, intron 1 of 9) L1PA13|LINE|L1 6253 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 894-49 chr8 77835137 77835986 + 2 NA Intergenic L1PA8A|LINE|L1 384864 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 325-113 chr11 127097143 127097460 + 2 NA intron (NR_120578, intron 1 of 2) intron (NR_120578, intron 1 of 2) 30299 NR_120578 101929473 Hs.737523 NR_120578 ENSG00000255087 LOC101929473 - uncharacterized LOC101929473 ncRNA 472-17 chr1 106135976 106136337 + 2 NA Intergenic Intergenic -107903 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 158-17 chr10 122740625 122740725 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -16019 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 310-85 chr11 83061895 83062061 + 2 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) 9484 NM_001286061 27314 Hs.40758 NM_014488 ENSG00000137502 RAB30 - RAB30, member RAS oncogene family protein-coding 309-132 chr13 78437534 78437699 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -158506 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 265-273 chr4 71910470 71910710 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -105070 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 426-83 chr15 59294681 59295087 + 2 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 77987 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 334-221 chr18 6198916 6199228 + 2 NA intron (NM_001365769, intron 12 of 16) intron (NM_001365769, intron 12 of 16) -57672 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 529-73 chr15 61309992 61310386 + 2 NA Intergenic L1PA16|LINE|L1 -80887 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 496-164 chr20 47038142 47038491 + 2 NA intron (NM_172110, intron 5 of 13) AluJo|SINE|Alu -128651 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 217-215 chr22 48771512 48771647 + 2 NA Intergenic L1M7|LINE|L1 -8716 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 379-13 chr1 90095777 90096046 + 2 NA Intergenic L1PA4|LINE|L1 100801 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 578-89 chr2 85330814 85331344 + 2 NA Intergenic L2c|LINE|L2 -3090 NM_001368096 10618 Hs.593382 NM_006464 ENSG00000152291 TGOLN2 TGN38|TGN46|TGN48|TGN51|TTGN2 trans-golgi network protein 2 protein-coding 284-453 chrX 64384065 64384278 + 2 NA intron (NM_017677, intron 1 of 13) MSTA-int|LTR|ERVL-MaLR 11281 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 548-19 chr1 244545823 244546284 + 2 NA intron (NM_001130957, intron 8 of 21) ERVL-B4-int|LTR|ERVL 84682 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 304-212 chr18 66091181 66091442 + 2 NA Intergenic Intergenic 340299 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 382-72 chr12 377152 377470 + 2 NA intron (NM_001042603, intron 3 of 27) HAL1|LINE|L1 12009 NM_001042603 5927 Hs.76272 NM_005056 ENSG00000073614 KDM5A RBBP-2|RBBP2|RBP2 lysine demethylase 5A protein-coding 266-370 chr6 113902393 113902608 + 2 NA Intergenic L1MC5|LINE|L1 -1887 NR_027060 285759 Hs.376634 NM_173673 ENSG00000175967 FLJ34503 - uncharacterized FLJ34503 ncRNA 246-287 chr4 31789841 31790063 + 2 NA Intergenic Intergenic -207427 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 558-60 chr15 60903224 60903592 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 221839 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 336-594 chrX 17173966 17174204 + 2 NA Intergenic MIR|SINE|MIR -201115 NM_198270 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 410-77 chr13 34292543 34292862 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -55341 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 606-18 chr10 34064789 34065254 + 2 NA Intergenic Intergenic -292341 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 165-132 chr8 107981057 107981188 + 2 NA intron (NM_001282863, intron 2 of 4) intron (NM_001282863, intron 2 of 4) 100817 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 466-56 chr12 14562684 14563040 + 2 NA intron (NM_024829, intron 1 of 10) intron (NM_024829, intron 1 of 10) -4870 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 188-177 chr6 34872352 34872498 + 2 NA exon (NM_017754, exon 21 of 21) exon (NM_017754, exon 21 of 21) 15617 NM_005643 6882 Hs.112444 NM_005643 ENSG00000064995 TAF11 MGC:15243|PRO2134|TAF2I|TAFII28 TATA-box binding protein associated factor 11 protein-coding 512-51 chr11 79815929 79816211 + 2 NA Intergenic Intergenic -375040 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 252-230 chr20 40521258 40521426 + 2 NA Intergenic Intergenic 167894 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 418-311 chrX 83306258 83306598 + 2 NA Intergenic Intergenic -201862 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 530-262 chr8 131328891 131329244 + 2 NA Intergenic Intergenic -288158 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 350-212 chr2 39915565 39915852 + 2 NA Intergenic L1MA4A|LINE|L1 -1926 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 388-277 chr5 54880736 54881029 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 104711 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 288-384 chr6 152418239 152418493 + 2 NA intron (NM_182961, intron 40 of 145) MER67C|LTR|ERV1 37836 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 230-310 chr5 119650302 119650516 + 2 NA Intergenic Intergenic 20850 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 464-62 chr14 55537255 55537574 + 2 NA Intergenic AluSx1|SINE|Alu 42678 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 207-5 chr1 57982086 57982267 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 121595 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 259-52 chr10 67281191 67281392 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 122119 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 196-221 chr6 45117305 45117413 + 2 NA intron (NM_001350325, intron 2 of 10) L3|LINE|CR1 80411 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 411-147 chr2 77920763 77921122 + 2 NA intron (NR_110288, intron 1 of 3) (CATA)n|Simple_repeat|Simple_repeat 5008 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 266-163 chr19 57167918 57168092 + 2 NA promoter-TSS (NM_001012729) promoter-TSS (NM_001012729) -520 NM_001012729 503835 Hs.585857 NM_001012729 ENSG00000258873 DUXA - double homeobox A protein-coding 326-484 chr7 9308741 9308942 + 2 NA Intergenic Intergenic -325429 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 140-64 chr6 96356306 96356398 + 2 NA Intergenic Intergenic -165454 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 355-442 chr6 135778817 135779133 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -72726 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 567-27 chr10 94224325 94224757 + 2 NA intron (NM_001165979, intron 3 of 31) intron (NM_001165979, intron 3 of 31) 62529 NR_033969 100128054 Hs.677562 NR_033969 ENSG00000268894 PLCE1-AS1 - PLCE1 antisense RNA 1 ncRNA 307-316 chr3 153397552 153397825 + 2 NA intron (NR_146713, intron 5 of 6) L1MA3|LINE|L1 -86807 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 577-76 chr17 68819146 68819550 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 136044 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 362-408 chr7 99193938 99194241 + 2 NA intron (NM_001145715, intron 4 of 9) L1MEd|LINE|L1 13400 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 185-155 chr4 167253738 167253886 + 2 NA Intergenic Intergenic -19222 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 329-591 chr8 126919672 126919987 + 2 NA Intergenic L1ME1|LINE|L1 -93325 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 240-12 chr1 93975910 93976124 + 2 NA Intergenic Intergenic -66419 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 404-249 chr5 11982411 11982691 + 2 NA Intergenic Intergenic -78105 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 311-79 chr11 21305328 21305618 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 635887 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 356-156 chr14 83244488 83244706 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 601965 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 230-158 chr19 43905863 43906072 + 2 NA Intergenic L1MC|LINE|L1 -4164 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 431-297 chr8 110616485 110616762 + 2 NA Intergenic Intergenic 410810 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 315-455 chr7 126708315 126708562 + 2 NA intron (NM_001371088, intron 7 of 7) L1MA8|LINE|L1 349746 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 417-293 chr8 138010519 138010833 + 2 NA intron (NR_161374, intron 2 of 7) MLT1B|LTR|ERVL-MaLR 72869 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 352-186 chr17 73575747 73575972 + 2 NA intron (NM_001144952, intron 1 of 44) L2c|LINE|L2 62176 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 324-170 chr14 85474865 85475148 + 2 NA Intergenic Intergenic -55019 NR_144386 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 214-337 chr8 125780253 125780424 + 2 NA Intergenic Intergenic 170859 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 304-175 chr16 26174489 26174699 + 2 NA Intergenic L1M5|LINE|L1 149357 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 196-268 chr9 30748582 30748747 + 2 NA Intergenic Intergenic -340210 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 329-284 chr2 114819725 114819997 + 2 NA intron (NM_001321910, intron 2 of 26) Eulor8|DNA|TcMar? 13687 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 235-318 chr7 17450757 17450969 + 2 NA intron (NR_110014, intron 2 of 3) MIR3|SINE|MIR 75946 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 610-142 chr5 175049692 175050140 + 2 NA Intergenic AluJb|SINE|Alu -54185 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 392-67 chr12 76496892 76497256 + 2 NA intron (NM_001003712, intron 1 of 22) intron (NM_001003712, intron 1 of 22) 62697 NM_020841 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 338-228 chr18 24409880 24410065 + 2 NA Intergenic MER4D|LTR|ERV1 -12148 NM_080597 114876 Hs.370725 NM_018030 ENSG00000141447 OSBPL1A ORP-1|ORP1|OSBPL1B oxysterol binding protein like 1A protein-coding 176-119 chr6 22769022 22769189 + 2 NA Intergenic Intergenic -51181 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 399-183 chr20 35101351 35101720 + 2 NA Intergenic L1MC5a|LINE|L1 -8720 NM_199368 26133 Hs.168073 NM_015638 ENSG00000100991 TRPC4AP C20orf188|PPP1R158|TRRP4AP|TRUSS transient receptor potential cation channel subfamily C member 4 associated protein protein-coding 186-79 chr2 59215435 59215554 + 2 NA Intergenic Intergenic -2214 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 519-40 chr11 121799309 121799646 + 2 NA Intergenic Intergenic 300367 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 353-61 chr10 58563696 58563973 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 50962 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 225-210 chr3 80543924 80544094 + 2 NA Intergenic Intergenic -220888 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 251-291 chr5 26736971 26737165 + 2 NA Intergenic Intergenic 301518 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 255-226 chr2 213682162 213682407 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -75783 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 249-417 chr8 83306172 83306358 + 2 NA Intergenic Intergenic -97493 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 190-200 chrX 54059325 54059457 + 2 NA Intergenic Intergenic -14255 NM_001184896 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 363-83 chr11 79545080 79545306 + 2 NA Intergenic Intergenic -104163 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 310-106 chr12 77436140 77436378 + 2 NA Intergenic Intergenic -370690 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 377-203 chr2 76530922 76531226 + 2 NA Intergenic Intergenic -454891 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 471-255 chr7 110871817 110872136 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -219030 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 696-114 chr9 84843627 84844094 + 2 NA intron (NM_001018064, intron 12 of 17) L2c|LINE|L2 137959 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 536-149 chr20 52726281 52726651 + 2 NA Intergenic Intergenic 105628 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 292-61 chr10 111975655 111975850 + 2 NA Intergenic MIRc|SINE|MIR 208013 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 281-164 chr17 56053004 56053174 + 2 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat -100386 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 440-164 chr3 96241175 96241530 + 2 NA Intergenic AluSx3|SINE|Alu -118612 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 289-426 chr6 168698332 168698589 + 2 NA Intergenic Intergenic 257276 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 371-237 chr3 35260970 35261284 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 132896 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 233-156 chr2 16185075 16185239 + 2 NA Intergenic Intergenic 134730 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 253-53 chr10 60861229 60861443 + 2 NA Intergenic Intergenic 82849 NM_001350904 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 255-87 chr12 128294072 128294312 + 2 NA promoter-TSS (NR_037406) promoter-TSS (NR_037406) 100 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 229-354 chr7 34389651 34389785 + 2 NA intron (NR_033665, intron 3 of 3) LTR49-int|LTR|ERV1 -268500 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 208-88 chr16 78225332 78225533 + 2 NA intron (NM_001291997, intron 4 of 7) (TTTTAA)n|Simple_repeat|Simple_repeat 125778 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 286-381 chr6 27765679 27765877 + 2 NA Intergenic Intergenic 4034 NR_038929 100131289 Hs.200573 NR_038929 LOC100131289 - uncharacterized LOC100131289 ncRNA 229-345 chr6 162545796 162545920 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -181274 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 386-391 chrX 133175815 133176127 + 2 NA Intergenic Intergenic 42383 NM_016521 51270 NM_016521 ENSG00000183434 TFDP3 CT30|DP4|HCA661 transcription factor Dp family member 3 protein-coding 279-317 chr5 30138663 30138882 + 2 NA Intergenic Intergenic 258212 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 347-380 chr5 25946189 25946380 + 2 NA Intergenic Intergenic 755331 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 350-474 chr7 31592580 31592802 + 2 NA intron (NM_194300, intron 8 of 12) MER1B|DNA|hAT-Charlie 39689 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 288-371 chr6 67505008 67505199 + 2 NA Intergenic Intergenic -550248 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 207-271 chr7 50635649 50635847 + 2 NA intron (NM_001350816, intron 6 of 17) L1PB4|LINE|L1 69553 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 291-363 chr5 114469569 114469807 + 2 NA intron (NM_021614, intron 4 of 7) intron (NM_021614, intron 4 of 7) 36177 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 241-268 chr4 66786829 66786989 + 2 NA Intergenic Intergenic 510085 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 272-185 chr2 56659982 56660154 + 2 NA Intergenic Intergenic -474298 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 212-46 chr10 78589412 78589606 + 2 NA Intergenic L1M5|LINE|L1 322167 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 481-84 chr14 43006673 43006993 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 1399977 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 370-391 chr6 49894171 49894377 + 2 NA Intergenic L1PB1|LINE|L1 -17178 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 450-148 chr2 126741155 126741599 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 85219 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 321-581 chr8 137865357 137865573 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 218080 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 153-11 chr1 224822716 224822837 + 2 NA Intergenic Intergenic -106878 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 205-164 chr20 35512614 35512787 + 2 NA TTS (NM_001318219) TTS (NM_001318219) 16952 NM_001145350 140873 Hs.158680 NM_080828 ENSG00000125975 C20orf173 dJ477O4.4 chromosome 20 open reading frame 173 protein-coding 296-155 chr15 54756840 54757013 + 2 NA Intergenic L1PA14|LINE|L1 -299821 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 381-77 chr11 97231171 97231442 + 2 NA Intergenic Intergenic 722881 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 335-570 chr9 99627845 99628178 + 2 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 191878 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 193-46 chr12 44726590 44726733 + 2 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 149000 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 494-4 chr1 46971367 46971747 + 2 NA intron (NM_001320289, intron 1 of 11) L1PA15|LINE|L1 10193 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 329-452 chr5 38072716 38073016 + 2 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 47169 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 472-125 chr17 70881704 70881966 + 2 NA Intergenic Intergenic 320344 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 318-470 chr6 20904997 20905190 + 2 NA intron (NM_017774, intron 9 of 15) L1M4c|LINE|L1 370636 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 153-98 chr8 96416190 96416302 + 2 NA Intergenic L1ME3Cz|LINE|L1 -28808 NR_125828 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 316-198 chr16 31757491 31757660 + 2 NA intron (NM_001130913, intron 4 of 4) L1MC4a|LINE|L1 44346 NM_001130913 124411 Hs.528826 NM_001004300 ENSG00000197302 ZNF720 - zinc finger protein 720 protein-coding 199-229 chr7 132918059 132918219 + 2 NA intron (NM_001317177, intron 4 of 8) intron (NM_001317177, intron 4 of 8) 116776 NR_037427 100500804 NR_037427 ENSG00000284135 MIR3654 - microRNA 3654 ncRNA 200-87 chr15 93314856 93315022 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 108873 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 354-220 chr2 124181361 124181696 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 156241 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 720-59 chr3 26696410 26696961 + 2 NA intron (NM_001317811, intron 1 of 2) intron (NM_001317811, intron 1 of 2) 2128 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 210-219 chr5 25377472 25377642 + 2 NA Intergenic AluSx1|SINE|Alu 186604 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 413-46 chr11 7481969 7482323 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -3360 NM_198474 283298 Hs.503500 NM_198474 ENSG00000183801 OLFML1 MVAL564|UNQ564 olfactomedin like 1 protein-coding 331-485 chr7 25638354 25638671 + 2 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 24628 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 1019-17 chr4 178002104 178002749 + 2 NA Intergenic Intergenic -94490 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 275-227 chr20 56851948 56852134 + 2 NA Intergenic L1M2|LINE|L1 222735 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 325-487 chr7 2036290 2036544 + 2 NA intron (NM_001013837, intron 12 of 18) intron (NM_001013837, intron 12 of 18) 52635 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 153-58 chr2 185045689 185045827 + 2 NA Intergenic L1M4b|LINE|L1 121314 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 346-303 chr3 21204081 21204396 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -201488 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 310-371 chr4 73423516 73423785 + 2 NA Intergenic Intergenic -12571 NM_001134 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 229-292 chr5 12226122 12226324 + 2 NA Intergenic L1MA3|LINE|L1 -321777 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 479-76 chr16 17423379 17423791 + 2 NA intron (NM_022166, intron 1 of 11) intron (NM_022166, intron 1 of 11) 47375 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 176-23 chr12 128319304 128319466 + 2 NA intron (NM_001136103, intron 1 of 8) (GT)n|Simple_repeat|Simple_repeat 25293 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 337-67 chr10 98452603 98452881 + 2 NA intron (NR_134451, intron 2 of 3) intron (NR_134451, intron 2 of 3) -5779 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 336-591 chr9 135128739 135129019 + 2 NA Intergenic Tigger12A|DNA|TcMar-Tigger 41211 NM_001282611 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 207-293 chr8 86012014 86012197 + 2 NA Intergenic Intergenic 57563 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 440-49 chr12 77627217 77627605 + 2 NA Intergenic L1MA4|LINE|L1 -203483 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 543-271 chrX 81642676 81643123 + 2 NA Intergenic L1PREC2|LINE|L1 440797 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 292-148 chr15 39470053 39470339 + 2 NA Intergenic Intergenic -110883 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 262-67 chr11 6246303 6246525 + 2 NA Intergenic Intergenic 7325 NM_001037329 1262 Hs.434618 NM_001037329 ENSG00000132259 CNGA4 CNCA2|CNG-4|CNG4|CNG5|CNGB2|OCNC2|OCNCBETA|OCNCb cyclic nucleotide gated channel alpha 4 protein-coding 286-356 chr5 54917275 54917474 + 2 NA Intergenic L1M4|LINE|L1 68219 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 333-595 chr9 6097906 6098160 + 2 NA Intergenic LTR8B|LTR|ERV1 -82409 NM_001243203 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 332-439 chr5 163144960 163145168 + 2 NA Intergenic Intergenic -292507 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 331-28 chr1 183855389 183855660 + 2 NA intron (NM_001297669, intron 4 of 18) intron (NM_001297669, intron 4 of 18) 50404 NM_001297671 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 274-186 chr19 38682014 38682180 + 2 NA intron (NM_001322033, intron 1 of 20).2 AluSz6|SINE|Alu 34448 NM_004924 81 Hs.270291 NM_004924 ENSG00000130402 ACTN4 ACTININ-4|FSGS|FSGS1 actinin alpha 4 protein-coding 276-103 chr12 19585882 19586132 + 2 NA Intergenic Intergenic 145408 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 305-564 chr9 105648618 105648873 + 2 NA Intergenic Intergenic -13712 NM_005421 6887 Hs.247978 NM_005421 ENSG00000186051 TAL2 - TAL bHLH transcription factor 2 protein-coding 468-256 chr5 83196633 83196973 + 2 NA intron (NM_001318012, intron 4 of 7) intron (NM_001318012, intron 4 of 7) 119256 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 343-82 chr11 106574006 106574193 + 2 NA Intergenic Intergenic 322692 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 357-334 chr5 17198521 17198812 + 2 NA intron (NR_027253, intron 1 of 2) HAL1|LINE|L1 -18157 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 333-226 chr2 31283182 31283463 + 2 NA Intergenic Intergenic 49170 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 230-55 chr11 9661062 9661284 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -2904 NM_015055 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 290-192 chr19 37099375 37099543 + 2 NA non-coding (NR_138039, exon 6 of 6) non-coding (NR_138039, exon 6 of 6) 21026 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 591-46 chr15 95694812 95695312 + 2 NA Intergenic L1MCc|LINE|L1 261969 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 569-132 chr4 36250663 36251089 + 2 NA intron (NR_122079, intron 3 of 4) Kanga1|DNA|TcMar-Tc2 -5642 NR_122080 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 319-261 chr2 138319111 138319397 + 2 NA Intergenic Intergenic -182516 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 504-259 chr8 89129161 89129589 + 2 NA Intergenic MER73|LTR|ERVL 628336 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 244-180 chr2 185011894 185012104 + 2 NA Intergenic L1MC5|LINE|L1 155073 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 253-210 chr2 215241161 215241345 + 2 NA Intergenic Intergenic -70806 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 306-545 chr9 71169405 71169560 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -47861 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 523-147 chr2 217272774 217273225 + 2 NA Intergenic Intergenic -9734 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 390-374 chr8 57392239 57392466 + 2 NA Intergenic L1MEg|LINE|L1 48565 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 381-16 chr1 159463549 159463779 + 2 NA Intergenic L1ME1|LINE|L1 23942 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 327-495 chr8 107031439 107031675 + 2 NA Intergenic L1MA8|LINE|L1 -261313 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 364-15 chr1 79198051 79198275 + 2 NA Intergenic Intergenic -191433 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 277-143 chr16 76736373 76736566 + 2 NA Intergenic L2|LINE|L2 101471 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 423-165 chr22 27854703 27854991 + 2 NA intron (NM_001284277, intron 10 of 10) intron (NM_001284277, intron 10 of 10) -53091 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 570-40 chr11 44643243 44643677 + 2 NA Intergenic L1ME1|LINE|L1 77797 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 553-5 chr1 57677336 57677735 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -183046 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 350-528 chr8 113902930 113903227 + 2 NA Intergenic Intergenic -466139 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 258-362 chr7 24493909 24494080 + 2 NA Intergenic Intergenic -79458 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 269-88 chr12 43549970 43550119 + 2 NA intron (NM_025003, intron 2 of 38) intron (NM_025003, intron 2 of 38) 2159 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 359-259 chr2 196020914 196021263 + 2 NA intron (NM_018897, intron 8 of 64) intron (NM_018897, intron 8 of 64) 47749 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 410-222 chr4 97076273 97076660 + 2 NA Intergenic Intergenic -290460 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 387-179 chr2 114559420 114559771 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 98018 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 662-93 chr8 41517992 41518636 + 2 NA Intergenic AluJr|SINE|Alu -10947 NM_032336 84296 Hs.656996 NM_032336 ENSG00000147536 GINS4 SLD5 GINS complex subunit 4 protein-coding 189-207 chr8 87677388 87677532 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 196555 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 377-21 chr1 159241370 159241704 + 2 NA Intergenic L1MA7|LINE|L1 36662 NM_002036 2532 Hs.153381 NM_002036 ENSG00000213088 ACKR1 CCBP1|CD234|DARC|DARC/ACKR1|Dfy|FY|GPD|GpFy|WBCQ1 atypical chemokine receptor 1 (Duffy blood group) protein-coding 300-405 chr6 139534925 139535118 + 2 NA Intergenic Intergenic -60425 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 487-82 chr14 36408625 36409104 + 2 NA Intergenic Intergenic -88188 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 485-68 chr13 78172153 78172576 + 2 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 117509 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 315-100 chr12 30333517 30333784 + 2 NA Intergenic L1ME2|LINE|L1 343594 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 341-531 chr8 105079532 105079816 + 2 NA Intergenic Intergenic -238764 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 437-142 chr2 134535433 134535692 + 2 NA intron (NM_030923, intron 4 of 7) L1MB1|LINE|L1 183438 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 237-283 chr5 7040224 7040434 + 2 NA Intergenic Intergenic -212408 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 410-13 chr1 158589411 158589666 + 2 NA Intergenic L1MD2|LINE|L1 -9639 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 145-57 chr3 176133377 176133487 + 2 NA Intergenic Intergenic -111119 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 783-84 chrX 83221053 83221637 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -286945 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 403-319 chr8 137349151 137349387 + 2 NA Intergenic L1PA14|LINE|L1 64319 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 149-9 chr1 195499208 195499330 + 2 NA Intergenic L1MCc|LINE|L1 589446 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 353-272 chr20 136614 136956 + 2 NA Intergenic L1M2|LINE|L1 -5805 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 312-140 chr14 47475884 47476141 + 2 NA intron (NM_001113498, intron 1 of 16) L1PA10|LINE|L1 -132766 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 331-550 chr9 27794647 27794839 + 2 NA Intergenic L1P3|LINE|L1 -220877 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 684-110 chr7 4368112 4368473 + 2 NA Intergenic Intergenic -233455 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 248-264 chr4 8668381 8668575 + 2 NA Intergenic L1MEd|LINE|L1 75713 NM_001014447 8532 Hs.61995 NM_003652 ENSG00000109625 CPZ - carboxypeptidase Z protein-coding 234-317 chr5 116326426 116326649 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 48033 NR_104675 101927190 Hs.639849 NR_104675 LOC101927190 - uncharacterized LOC101927190 ncRNA 247-72 chr11 122060006 122060180 + 2 NA intron (NR_137178, intron 3 of 4) L1MEc|LINE|L1 39751 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 277-174 chr2 6831417 6831589 + 2 NA intron (NR_126359, intron 2 of 3) L1ME1|LINE|L1 8961 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 378-301 chr4 36670796 36671024 + 2 NA Intergenic MIR|SINE|MIR -29010 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 728-22 chr12 54874612 54875078 + 2 NA Intergenic L1M3|LINE|L1 20329 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 315-157 chr15 88965786 88966048 + 2 NA Intergenic L1MA5A|LINE|L1 -52538 NM_001114614 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 414-178 chr2 212865113 212865345 + 2 NA Intergenic L1M2|LINE|L1 -61028 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 501-131 chr20 23260990 23261395 + 2 NA Intergenic Intergenic -89599 NM_013248 29107 Hs.516933 NM_013248 ENSG00000132661 NXT1 MTR2|P15 nuclear transport factor 2 like export factor 1 protein-coding 288-76 chr11 117320976 117321238 + 2 NA promoter-TSS (NM_001271933) promoter-TSS (NM_001271933) -671 NM_001271933 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 388-220 chr3 24873003 24873339 + 2 NA intron (NM_001290216, intron 2 of 10) intron (NM_001290216, intron 2 of 10) 43848 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 428-126 chr2 67431490 67431802 + 2 NA Intergenic L1M7|LINE|L1 34313 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 423-292 chr8 77423931 77424270 + 2 NA Intergenic MER58D|DNA|hAT-Charlie -26597 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 567-161 chr6 84104856 84105312 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 70965 NM_001346544 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 452-21 chr10 15413763 15414171 + 2 NA Intergenic Intergenic -42678 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 288-448 chr8 108313194 108313471 + 2 NA Intergenic Intergenic -64615 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 330-29 chr1 162940512 162940709 + 2 NA Intergenic Intergenic -71795 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 418-283 chr8 68101424 68101728 + 2 NA intron (NM_024870, intron 23 of 39) intron (NM_024870, intron 23 of 39) 149530 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 430-310 chr8 75864290 75864636 + 2 NA Intergenic Intergenic 324495 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 304-64 chr10 111333635 111333921 + 2 NA Intergenic Intergenic 219487 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 305-138 chr13 58202574 58202793 + 2 NA intron (NR_120416, intron 1 of 2) (TCTT)n|Simple_repeat|Simple_repeat 30434 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 173-53 chr16 81972265 81972370 + 2 NA Intergenic L1MB1|LINE|L1 39153 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 383-60 chr11 97472180 97472456 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner 963893 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 185-60 chr14 56164713 56164871 + 2 NA intron (NM_021255, intron 1 of 5) L1MA1|LINE|L1 46381 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 151-44 chr20 25741467 25741552 + 2 NA Intergenic ERVL47-int|LTR|ERVL -9699 NR_135006 105372582 Hs.516951 NR_135006 LOC105372582 - uncharacterized LOC105372582 ncRNA 501-93 chr19 24386538 24386879 + 2 NA Intergenic MER11C|LTR|ERVK -223261 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 278-293 chr3 162519474 162519712 + 2 NA Intergenic Intergenic 783708 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 542-78 chr17 51783571 51783955 + 2 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 348336 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 226-291 chr5 125795114 125795297 + 2 NA Intergenic ERVL47-int|LTR|ERVL 301944 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 680-44 chr15 101852796 101853297 + 2 NA Intergenic L1M3|LINE|L1 10927 NR_046417 390651 Hs.578689 NR_046417 ENSG00000214344 OR4F13P GPCRLTM7 olfactory receptor family 4 subfamily F member 13 pseudogene pseudo 624-134 chrX 95401541 95401871 + 2 NA Intergenic L1PA13|LINE|L1 -338480 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 277-395 chr8 4662225 4662474 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 332565 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 351-480 chr8 69188942 69189151 + 2 NA Intergenic Intergenic -84856 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 289-180 chr17 69935454 69935613 + 2 NA Intergenic Intergenic -26174 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 361-108 chr12 61640309 61640542 + 2 NA Intergenic L1MEg|LINE|L1 552414 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 444-231 chr7 2039481 2039898 + 2 NA intron (NM_001013837, intron 12 of 18) L1MD1|LINE|L1 49363 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 240-366 chr6 6208594 6208770 + 2 NA intron (NM_000129, intron 8 of 14) intron (NM_000129, intron 8 of 14) -39247 NR_107007 102466866 NR_107007 ENSG00000263572 MIR7853 hsa-mir-7853 microRNA 7853 ncRNA 250-184 chr19 40020921 40021120 + 2 NA TTS (NM_001297763) TTS (NM_001297763) 23960 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 402-245 chr4 114478818 114479173 + 2 NA Intergenic L2|LINE|L2 -119407 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 286-182 chr19 56382700 56382849 + 2 NA TTS (NM_144690) TTS (NM_144690) 10760 NM_144690 147948 Hs.244391 NM_144690 ENSG00000018869 ZNF582 - zinc finger protein 582 protein-coding 241-90 chr12 100572030 100572265 + 2 NA Intergenic L2c|LINE|L2 -1537 NM_174942 283431 Hs.20575 NM_174942 ENSG00000139354 GAS2L3 G2L3 growth arrest specific 2 like 3 protein-coding 308-186 chr17 61244293 61244578 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 123269 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 281-285 chr3 43242040 43242229 + 2 NA Intergenic Intergenic -44378 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 225-181 chr20 42765202 42765363 + 2 NA intron (NM_133170, intron 5 of 31) L4_A_Mam|LINE|RTE-X 79799 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 474-78 chr14 46400672 46400989 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -70529 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 421-24 chr10 20433942 20434220 + 2 NA Intergenic Intergenic -117889 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 315-244 chr2 97724030 97724211 + 2 NA exon (NM_001079, exon 3 of 14) exon (NM_001079, exon 3 of 14) -10286 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 341-385 chr4 97712274 97712567 + 2 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 345494 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 215-245 chr5 12207994 12208156 + 2 NA Intergenic L1PA15|LINE|L1 -303629 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 404-198 chr20 58566467 58566800 + 2 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -51234 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 377-156 chr17 52704852 52705085 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -157153 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 194-88 chr2 18112989 18113111 + 2 NA Intergenic L2a|LINE|L2 234383 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 324-323 chr21 25148979 25149295 + 2 NA Intergenic L1MA2|LINE|L1 282564 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 427-278 chr9 81982663 81982952 + 2 NA Intergenic L1MD1|LINE|L1 -5965 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 323-409 chr5 32696738 32696929 + 2 NA intron (NM_001364458, intron 1 of 7) L1MA3|LINE|L1 5961 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 188-188 chr7 13276351 13276467 + 2 NA Intergenic Intergenic 588776 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 402-206 chr3 25493619 25493865 + 2 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 35432 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 308-446 chr7 4524581 4524853 + 2 NA Intergenic AluJo|SINE|Alu -157578 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 239-280 chr4 66409155 66409338 + 2 NA Intergenic Intergenic 132422 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 309-83 chr11 56978998 56979187 + 2 NA Intergenic Intergenic -9822 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 184-70 chr16 73551804 73551917 + 2 NA Intergenic Intergenic 165055 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 236-67 chr11 29659608 29659792 + 2 NA Intergenic LTR16B|LTR|ERVL 40898 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 121-40 chr3 64732675 64732761 + 2 NA intron (NR_038264, intron 1 of 5) L2b|LINE|L2 -44718 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 498-99 chr16 66233404 66233732 + 2 NA Intergenic Intergenic -133123 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 416-259 chr4 154877072 154877392 + 2 NA Intergenic LTR18B|LTR|ERVL 95727 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 335-533 chr8 75207835 75208012 + 2 NA Intergenic L1PA8|LINE|L1 70558 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 220-53 chr10 77466412 77466595 + 2 NA intron (NM_001271519, intron 1 of 28) L2a|LINE|L2 115631 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 195-93 chr18 40722754 40722914 + 2 NA Intergenic L1MA8|LINE|L1 656548 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 375-38 chr10 22918086 22918355 + 2 NA Intergenic L1MC5a|LINE|L1 -9804 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 311-131 chr14 45813907 45814081 + 2 NA Intergenic SATR1|Satellite|Satellite -98392 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 332-113 chr12 14102927 14103185 + 2 NA Intergenic L1PB1|LINE|L1 -122700 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 334-112 chr12 71554858 71555129 + 2 NA intron (NR_110596, intron 5 of 19) L2c|LINE|L2 108855 NM_144982 196441 Hs.245798 NM_144982 ENSG00000133858 ZFC3H1 CCDC131|CSRC2|PSRC2 zinc finger C3H1-type containing protein-coding 546-162 chr4 23755903 23756409 + 2 NA Intergenic Intergenic 125136 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 247-187 chr2 34388021 34388181 + 2 NA Intergenic Intergenic -289456 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 311-184 chr16 76430984 76431223 + 2 NA intron (NR_136213, intron 4 of 23) intron (NR_136213, intron 4 of 23) 121251 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 384-3 chr1 37122682 37123046 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -38699 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 259-205 chr2 107448825 107449023 + 2 NA Intergenic L1MCb|LINE|L1 -80495 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 297-8 chr1 53992329 53992572 + 2 NA Intergenic MER52A|LTR|ERV1 25736 NM_001276395 388633 Hs.439583 NM_001010978 ENSG00000203985 LDLRAD1 - low density lipoprotein receptor class A domain containing 1 protein-coding 303-87 chr12 21021465 21021624 + 2 NA exon (NM_001009562, exon 3 of 13) exon (NM_001009562, exon 3 of 13) 5848 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 334-363 chr3 118694520 118694763 + 2 NA intron (NR_135547, intron 1 of 3) L2b|LINE|L2 52873 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 130-37 chr2 44774586 44774695 + 2 NA Intergenic Intergenic 164248 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 481-264 chr6 64915219 64915586 + 2 NA intron (NM_001292009, intron 15 of 43) intron (NM_001292009, intron 15 of 43) -386016 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 191-56 chr14 66872326 66872430 + 2 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) -317062 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 230-33 chr10 25426906 25427089 + 2 NA intron (NM_020752, intron 4 of 10) intron (NM_020752, intron 4 of 10) -224715 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 325-180 chr15 35756344 35756613 + 2 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -170378 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 688-45 chr14 78507268 78507804 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 103817 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 509-100 chr18 56217259 56217644 + 2 NA Intergenic Intergenic -26189 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 362-78 chr10 112221075 112221411 + 2 NA Intergenic Intergenic -37478 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 397-97 chr14 70207738 70207950 + 2 NA intron (NR_135825, intron 2 of 3) intron (NR_135825, intron 2 of 3) -18774 NM_033262 6547 Hs.337696 NM_033262 ENSG00000100678 SLC8A3 NCX3 solute carrier family 8 member A3 protein-coding 209-58 chr11 82186038 82186179 + 2 NA intron (NR_120571, intron 3 of 7) (GT)n|Simple_repeat|Simple_repeat 217805 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 251-160 chr2 24352092 24352286 + 2 NA intron (NM_001348182, intron 1 of 38) Tigger7|DNA|TcMar-Tigger 8347 NM_006277 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 478-271 chr7 56664668 56665001 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -126704 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 166-61 chr2 241398236 241398338 + 2 NA intron (NM_014808, intron 2 of 26) L1ME3|LINE|L1 42002 NM_001282984 9855 Hs.726316 NM_014808 ENSG00000006607 FARP2 FIR|FRG|PLEKHC3 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding 257-387 chr7 53394599 53394768 + 2 NA Intergenic L1MD|LINE|L1 359050 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 261-211 chr20 9433423 9433656 + 2 NA intron (NM_000933, intron 24 of 35) L1MC5a|LINE|L1 -80819 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 274-379 chr8 59219031 59219175 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 99893 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 352-103 chr12 47477549 47477746 + 2 NA Intergenic L1PA15-16|LINE|L1 62639 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 393-275 chr5 42530350 42530597 + 2 NA intron (NM_001242400, intron 2 of 10) intron (NM_001242400, intron 2 of 10) -17570 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 322-529 chr8 85405058 85405323 + 2 NA Intergenic Intergenic -27077 NM_001738 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 602-123 chr7 13546056 13546615 + 2 NA Intergenic L1MA3|LINE|L1 440179 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 417-233 chr6 9746003 9746357 + 2 NA Intergenic Intergenic -658322 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 341-166 chr15 58584355 58584685 + 2 NA Intergenic Intergenic -85785 NR_120338 101928694 Hs.655781 NR_120338 ENSG00000259293 LIPC-AS1 - LIPC antisense RNA 1 ncRNA 380-255 chr3 107178113 107178441 + 2 NA intron (NR_028303, intron 1 of 3) MSTA-int|LTR|ERVL-MaLR 62361 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 187-97 chr20 55113255 55113372 + 2 NA Intergenic Intergenic -309730 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 278-377 chr6 122282614 122282849 + 2 NA Intergenic Intergenic -116820 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 341-489 chr7 32109290 32109487 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -37952 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 355-545 chrX 82545188 82545445 + 2 NA Intergenic L1MD|LINE|L1 -962974 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 259-219 chr2 185038044 185038220 + 2 NA Intergenic Intergenic 128940 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 373-302 chr4 179173399 179173640 + 2 NA Intergenic L1MB3|LINE|L1 -1265583 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 508-242 chr8 117780064 117780347 + 2 NA Intergenic L1PREC2|LINE|L1 140708 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 371-242 chr3 88585683 88585992 + 2 NA Intergenic Intergenic 247381 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 326-193 chr16 83635865 83636170 + 2 NA intron (NM_001220489, intron 7 of 12) L1MD2|LINE|L1 127671 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 499-47 chr11 100423975 100424373 + 2 NA Intergenic L1PBa|LINE|L1 -263114 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 588-58 chr18 42540588 42541112 + 2 NA intron (NR_046174, intron 6 of 9) L1ME3A|LINE|L1 354182 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 255-432 chr8 117183541 117183776 + 2 NA Intergenic L2c|LINE|L2 48663 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 438-11 chr1 97649897 97650251 + 2 NA intron (NM_000110, intron 8 of 22) L2b|LINE|L2 -146847 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 547-125 chr21 18665360 18665672 + 2 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 20648 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 211-33 chr10 61170271 61170421 + 2 NA Intergenic Intergenic 154071 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 359-67 chr10 91659940 91660274 + 2 NA Intergenic L2c|LINE|L2 -27036 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 204-216 chr4 55236275 55236427 + 2 NA Intergenic L1MA7|LINE|L1 -109891 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 586-98 chr3 33753740 33754113 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -35672 NM_001365627 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 184-122 chr4 45281102 45281240 + 2 NA Intergenic Intergenic -554537 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 265-32 chr10 47172409 47172565 + 2 NA Intergenic Intergenic -127710 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 501-73 chr15 95587011 95587370 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 154097 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 218-177 chr2 171268684 171268875 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -37486 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 159-105 chrX 79599400 79599510 + 2 NA Intergenic L1M5|LINE|L1 -231903 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 362-204 chr19 36456851 36457071 + 2 NA intron (NM_001145345, intron 4 of 4) L1MA9|LINE|L1 32474 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 378-12 chr1 80556178 80556411 + 2 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) 20539 NR_125940 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 422-68 chr13 50368991 50369243 + 2 NA intron (NR_109974, intron 2 of 6) L2c|LINE|L2 158332 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 339-629 chrX 98195393 98195614 + 2 NA Intergenic L1MC4|LINE|L1 -630968 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 243-99 chr12 71314592 71314833 + 2 NA Intergenic AluY|SINE|Alu -125086 NR_110596 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 572-191 chr9 37682401 37682784 + 2 NA intron (NM_001371223, intron 1 of 15) MIR1_Amn|SINE|MIR 14583 NM_001371223 240-8 chr1 57735710 57735943 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -124755 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 431-230 chr5 114683257 114683551 + 2 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 90009 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 220-173 chr2 105758675 105758888 + 2 NA intron (NM_003581, intron 1 of 4) intron (NM_003581, intron 1 of 4) 13718 NM_001004722 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 293-81 chr12 39146415 39146583 + 2 NA Intergenic Intergenic -240908 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 391-339 chr8 43479142 43479393 + 2 NA Intergenic Intergenic 186825 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 329-217 chr17 62353282 62353521 + 2 NA Intergenic Intergenic -16817 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 469-61 chr12 14561273 14561596 + 2 NA intron (NM_024829, intron 1 of 10) intron (NM_024829, intron 1 of 10) -6298 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 278-56 chr11 91427685 91427906 + 2 NA Intergenic L1PA11|LINE|L1 -558593 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 144-77 chr5 42154789 42154887 + 2 NA TTS (NR_104635) TTS (NR_104635) 20507 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 321-354 chr22 47174389 47174561 + 2 NA non-coding (NR_104292, exon 14 of 14) non-coding (NR_104292, exon 14 of 14) -171096 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 374-425 chrX 65804390 65804750 + 2 NA Intergenic L1MC|LINE|L1 136916 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 338-594 chr9 88630172 88630461 + 2 NA Intergenic L1ME3|LINE|L1 95138 NM_145283 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 195-72 chr15 93533152 93533273 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -323348 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 389-130 chr17 11288334 11288712 + 2 NA intron (NM_001173461, intron 2 of 3) FAM|SINE|Alu 47100 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 407-25 chr10 6515628 6515905 + 2 NA intron (NM_001323265, intron 1 of 17) intron (NM_001323265, intron 1 of 17) 64510 NM_006257 5588 Hs.498570 NM_006257 ENSG00000065675 PRKCQ PRKCT|nPKC-theta protein kinase C theta protein-coding 409-182 chr21 30008808 30009200 + 2 NA Intergenic Intergenic -68952 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 586-132 chr6 65770369 65770867 + 2 NA Intergenic Intergenic -17261 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 125-22 chr17 78384382 78384461 + 2 NA intron (NR_111989, intron 1 of 8) intron (NR_111989, intron 1 of 8) 5772 NR_111989 9489 Hs.654671 NM_024419 ENSG00000087157 PGS1 - phosphatidylglycerophosphate synthase 1 protein-coding 125-19 chr16 60603779 60603866 + 2 NA Intergenic L1ME3A|LINE|L1 -244029 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 581-117 chr4 86234410 86234856 + 2 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 114827 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 261-343 chr7 9171383 9171578 + 2 NA Intergenic L1M1|LINE|L1 -462790 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 333-383 chr4 33967758 33967993 + 2 NA intron (NR_125902, intron 3 of 4) L1MA7|LINE|L1 72018 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 319-189 chr17 55599046 55599264 + 2 NA Intergenic L1MB2|LINE|L1 123709 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 233-298 chr5 50912070 50912260 + 2 NA Intergenic Intergenic 58022 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 167-94 chr5 74880750 74880857 + 2 NA Intergenic L1M4|LINE|L1 -13837 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 371-41 chr10 33221274 33221476 + 2 NA intron (NM_001244973, intron 8 of 16) L2c|LINE|L2 -104568 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 459-77 chr14 38527540 38527889 + 2 NA Intergenic Intergenic -271621 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 392-106 chr16 78717508 78717769 + 2 NA intron (NM_001291997, intron 7 of 7) L2c|LINE|L2 617984 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 381-348 chr7 9522522 9522833 + 2 NA Intergenic L1MA7|LINE|L1 -111593 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 371-256 chr3 131676463 131676712 + 2 NA intron (NM_130808, intron 6 of 15) L1PA12|LINE|L1 -173616 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 533-135 chr3 71622833 71623175 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -39015 NM_001244810 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 304-240 chr2 16108601 16108864 + 2 NA Intergenic MER39|LTR|ERV1 58305 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 628-142 chr9 104465482 104466002 + 2 NA Intergenic LTR33|LTR|ERVL -38521 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 284-148 chr16 61499821 61499990 + 2 NA Intergenic Intergenic -444139 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 320-304 chr20 15363613 15363904 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 166918 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 358-212 chr2 75974303 75974487 + 2 NA Intergenic L1PB1|LINE|L1 -263480 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 275-15 chr1 152369699 152369908 + 2 NA Intergenic L1MD3|LINE|L1 -9797 NM_001014342 388698 Hs.156124 NM_001014342 ENSG00000143520 FLG2 IFPS|PSS6 filaggrin family member 2 protein-coding 446-97 chr14 24562769 24563037 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 13347 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 355-193 chr17 34795540 34795774 + 2 NA Intergenic MIR3|SINE|MIR 165803 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 340-531 chr8 75272085 75272396 + 2 NA intron (NR_103849, intron 1 of 1) L1M4|LINE|L1 6241 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 244-359 chr8 37922723 37922909 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 17308 NM_152413 137362 Hs.380740 NM_152413 ENSG00000169154 GOT1L1 - glutamic-oxaloacetic transaminase 1 like 1 protein-coding 809-39 chr5 27861891 27862472 + 2 NA Intergenic Intergenic 389889 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 676-42 chr16 29748550 29749040 + 2 NA Intergenic LTR12C|LTR|ERV1 -2805 NM_175900 283897 Hs.331095 NM_175900 ENSG00000185905 C16orf54 - chromosome 16 open reading frame 54 protein-coding 219-80 chr12 114999761 114999943 + 2 NA Intergenic Intergenic -315677 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 295-324 chr4 31471556 31471754 + 2 NA Intergenic Intergenic -34889 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 347-77 chr11 80492380 80492613 + 2 NA Intergenic L1MA6|LINE|L1 270307 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 227-132 chr16 76440203 76440371 + 2 NA intron (NR_136213, intron 4 of 23) intron (NR_136213, intron 4 of 23) 130435 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 619-106 chr5 156562401 156562834 + 2 NA intron (NM_001128209, intron 3 of 7) L2a|LINE|L2 235453 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 328-602 chr9 30172404 30172610 + 2 NA Intergenic Intergenic 235947 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 302-409 chr7 35474445 35474648 + 2 NA Intergenic L1M4|LINE|L1 160691 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 346-100 chr12 30432102 30432409 + 2 NA Intergenic Intergenic 244989 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 118-51 chr6 144203149 144203217 + 2 NA Intergenic Intergenic 52666 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 238-83 chr12 48505032 48505185 + 2 NA Intergenic L1MC1|LINE|L1 -20524 NM_001005203 341568 Hs.524373 NM_001005203 ENSG00000284723 OR8S1 - olfactory receptor family 8 subfamily S member 1 protein-coding 247-176 chr19 33587719 33587897 + 2 NA Intergenic Intergenic -34145 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 189-132 chr3 135717876 135718048 + 2 NA Intergenic L1MA6|LINE|L1 -247766 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 193-21 chr1 239179904 239180038 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -206597 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 164-54 chr2 52890690 52890778 + 2 NA Intergenic L1M2|LINE|L1 -188119 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 215-342 chr9 88981964 88982134 + 2 NA Intergenic L1MD2|LINE|L1 -8814 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 377-383 chr7 112389566 112389858 + 2 NA Intergenic Intergenic -33432 NM_001007245 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 604-79 chr2 65616824 65617185 + 2 NA Intergenic L1ME4a|LINE|L1 -184405 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 285-267 chr3 57579980 57580140 + 2 NA intron (NM_001660, intron 3 of 5) AluJr|SINE|Alu 17284 NM_001660 378 Hs.652183 NM_001660 ENSG00000168374 ARF4 ARF2 ADP ribosylation factor 4 protein-coding 448-45 chr11 24089895 24090202 + 2 NA Intergenic MIRb|SINE|MIR -407005 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 169-28 chr12 44458915 44459040 + 2 NA Intergenic Intergenic 416684 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 491-5 chr1 112072289 112072768 + 2 NA Intergenic AluSc|SINE|Alu 81992 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 568-190 chr8 9994790 9995203 + 2 NA Intergenic L1PA4|LINE|L1 -59296 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 512-267 chr8 43608193 43608587 + 2 NA Intergenic ALR/Alpha|Satellite|centr 315948 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 292-102 chr12 47204791 47204960 + 2 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) 11568 NR_026544 100233209 Hs.657722 NR_026544 ENSG00000247774 PCED1B-AS1 - PCED1B antisense RNA 1 ncRNA 202-8 chr1 164095242 164095384 + 2 NA Intergenic L1ME1|LINE|L1 -464047 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 308-256 chr2 195331776 195331941 + 2 NA Intergenic Intergenic -325100 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 294-113 chr14 47522275 47522562 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 152536 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 337-351 chr3 60035823 60036115 + 2 NA intron (NM_001320901, intron 2 of 6) MLT1I|LTR|ERVL-MaLR 44940 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 462-86 chr14 84907939 84908308 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -363809 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 406-132 chr2 15007943 15008302 + 2 NA Intergenic Intergenic 375405 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 649-69 chr3 76917760 76918367 + 2 NA Intergenic MER45R|DNA|hAT-Tip100 -122036 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 351-254 chr2 240086393 240086656 + 2 NA Intergenic Intergenic -40452 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 293-376 chr6 92650549 92650837 + 2 NA Intergenic MER39|LTR|ERV1 768866 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 213-296 chr9 20636390 20636560 + 2 NA Intergenic Intergenic -13976 NM_004529 4300 Hs.317248 NM_004529 ENSG00000171843 MLLT3 AF9|YEATS3 MLLT3 super elongation complex subunit protein-coding 452-26 chr10 31551412 31551726 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -151814 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 624-113 chr6 168639299 168639814 + 2 NA intron (NM_001166412, intron 9 of 12) L1MA4|LINE|L1 198372 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 225-230 chr3 177864931 177865102 + 2 NA intron (NR_110826, intron 1 of 2) L1ME2|LINE|L1 48151 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 220-26 chr1 197524516 197524702 + 2 NA intron (NR_125340, intron 17 of 19) intron (NR_125340, intron 17 of 19) 250871 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 227-298 chr5 153495642 153495804 + 2 NA intron (NM_001258019, intron 2 of 14) intron (NM_001258019, intron 2 of 14) 3551 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 184-145 chr6 131685661 131685792 + 2 NA intron (NR_133007, intron 13 of 23) intron (NR_133007, intron 13 of 23) 15675 NM_030908 79541 Hs.486488 NM_030908 ENSG00000180658 OR2A4 OR2A10 olfactory receptor family 2 subfamily A member 4 protein-coding 538-41 chr11 79594887 79595255 + 2 NA Intergenic Intergenic -154041 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 261-87 chr13 43181345 43181535 + 2 NA Intergenic L1MB7|LINE|L1 68275 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 247-335 chr5 110178341 110178527 + 2 NA Intergenic Intergenic 295252 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 301-334 chr4 128902723 128902944 + 2 NA intron (NM_144643, intron 18 of 20) Tigger3b|DNA|TcMar-Tigger 90989 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 344-296 chr22 33762624 33762858 + 2 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 37755 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 489-212 chr5 141437018 141437455 + 2 NA intron (NM_003735, intron 1 of 3) intron (NM_003735, intron 1 of 3) 6729 NM_032094 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 551-18 chr10 56314189 56314577 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 46876 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 341-424 chr5 18285213 18285517 + 2 NA Intergenic L1MC4a|LINE|L1 478091 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 306-562 chrX 85420984 85421187 + 2 NA Intergenic L1MA6|LINE|L1 -41420 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 416-48 chr10 82147059 82147458 + 2 NA intron (NR_163253, intron 2 of 10) MIRb|SINE|MIR 85662 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 497-136 chr2 126246969 126247298 + 2 NA Intergenic Intergenic -129148 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 235-301 chr6 15682708 15682898 + 2 NA Intergenic Intergenic -19745 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 371-21 chr1 187227277 187227525 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 134559 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 301-182 chr19 28170768 28170976 + 2 NA Intergenic L1P4|LINE|L1 -376932 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 207-226 chr4 117267616 117267810 + 2 NA Intergenic Intergenic 92926 NR_147151 105377389 Hs.129401 NR_147151 ENSG00000224932 LINC02262 - long intergenic non-protein coding RNA 2262 ncRNA 215-238 chr4 135392784 135392965 + 2 NA Intergenic Intergenic -269315 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 207-36 chr10 54799193 54799393 + 2 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 1938 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 394-17 chr1 112477209 112477432 + 2 NA intron (NM_001291880, intron 1 of 4) L1M2|LINE|L1 10779 NM_004185 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 274-354 chr7 52690653 52690850 + 2 NA Intergenic Intergenic -344882 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 321-56 chr10 42656002 42656290 + 2 NA Intergenic Intergenic -17309 NR_130950 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 339-126 chr12 53839399 53839585 + 2 NA Intergenic Intergenic -82458 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 524-21 chr1 227819242 227819686 + 2 NA intron (NM_183062, intron 3 of 4) L1M4|LINE|L1 3747 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 364-137 chr14 88107233 88107448 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -81028 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 161-90 chr5 151364235 151364322 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -16719 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 277-243 chr22 34757157 34757298 + 2 NA non-coding (NR_138042, exon 5 of 5) non-coding (NR_138042, exon 5 of 5) 240689 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 293-421 chr8 11704176 11704453 + 2 NA intron (NM_002052, intron 1 of 6) CpG-26998 112 NM_002052 2626 Hs.243987 NM_002052 ENSG00000136574 GATA4 ASD2|TACHD|TOF|VSD1 GATA binding protein 4 protein-coding 414-174 chr2 192249415 192249804 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -54676 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 130-90 chrX 64553738 64553826 + 2 NA Intergenic L1MC|LINE|L1 -158330 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 390-124 chr16 14338040 14338357 + 2 NA Intergenic (TCCA)n|Simple_repeat|Simple_repeat 28913 NR_029854 100126355 NR_029854 ENSG00000199130 MIR365A MIR365-1|MIRN365-1|hsa-mir-365a|mir-365a microRNA 365a ncRNA 209-136 chr18 34343473 34343673 + 2 NA Intergenic L2|LINE|L2 -120022 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 333-431 chr5 12512172 12512398 + 2 NA Intergenic Intergenic -62572 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 733-5 chr1 155570745 155571296 + 2 NA Intergenic Intergenic -8217 NM_018489 55870 Hs.491060 NM_018489 ENSG00000116539 ASH1L ASH1|ASH1L1|KMT2H|MRD52 ASH1 like histone lysine methyltransferase protein-coding 154-100 chr7 30081566 30081693 + 2 NA 3' UTR (NM_001197026, exon 14 of 14) 3' UTR (NM_001197026, exon 14 of 14) 36544 NM_001363474 84725 Hs.233495 NM_032639 ENSG00000106086 PLEKHA8 FAPP2 pleckstrin homology domain containing A8 protein-coding 289-103 chr12 44696044 44696297 + 2 NA intron (NM_006159, intron 13 of 20) intron (NM_006159, intron 13 of 20) 179491 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 688-101 chr7 113469423 113469856 + 2 NA Intergenic L1MC3|LINE|L1 -351057 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 358-38 chr10 36081244 36081530 + 2 NA Intergenic L1PA11|LINE|L1 303085 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 304-23 chr1 166573318 166573558 + 2 NA Intergenic Intergenic -30478 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 313-10 chr1 65976050 65976289 + 2 NA intron (NM_002600, intron 3 of 16) MSTA-int|LTR|ERVL-MaLR -16447 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 196-32 chr10 76149641 76149831 + 2 NA intron (NM_001305581, intron 5 of 6) MamTip2|DNA|hAT-Tip100 366975 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 372-200 chr18 21711423 21711675 + 2 NA Intergenic AluSx1|SINE|Alu -6775 NM_001308256 171586 Hs.397978 NM_138340 ENSG00000158201 ABHD3 LABH3 abhydrolase domain containing 3 protein-coding 268-55 chr10 88299165 88299403 + 2 NA intron (NM_001031709, intron 6 of 6) L1ME1|LINE|L1 284034 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 744-20 chr12 130209330 130209756 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 47084 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 384-144 chr18 8262801 8263140 + 2 NA intron (NM_002845, intron 17 of 30) intron (NM_002845, intron 17 of 30) 104064 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 223-81 chr14 30172158 30172344 + 2 NA Intergenic HAL1|LINE|L1 -244404 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 248-356 chr6 102049783 102050009 + 2 NA intron (NM_001166247, intron 14 of 16) intron (NM_001166247, intron 14 of 16) 650911 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 506-203 chr4 54282298 54282771 + 2 NA TTS (NM_001347827) TTS (NM_001347827) 48574 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 237-299 chr5 67581500 67581654 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 65212 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 450-216 chr4 5155738 5156053 + 2 NA intron (NM_001306082, intron 3 of 12) (TATACA)n|Simple_repeat|Simple_repeat 104415 NM_018401 55351 Hs.133062 NM_018401 ENSG00000152953 STK32B HSA250839|STK32|STKG6|YANK2 serine/threonine kinase 32B protein-coding 434-7 chr1 73102680 73102982 + 2 NA Intergenic L1PA17|LINE|L1 -203339 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 355-380 chr4 121275228 121275509 + 2 NA Intergenic L2c|LINE|L2 -47885 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 288-184 chr2 57095763 57095968 + 2 NA Intergenic L3|LINE|CR1 -811786 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 310-188 chr17 66524169 66524419 + 2 NA intron (NM_002737, intron 3 of 16) intron (NM_002737, intron 3 of 16) -107440 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 517-237 chr6 67652232 67652697 + 2 NA Intergenic Intergenic -402887 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 340-163 chr14 101493771 101493996 + 2 NA Intergenic L1MB3|LINE|L1 51807 NR_135240 100507277 Hs.123543 NR_135240 ENSG00000259082 LINC02314 - long intergenic non-protein coding RNA 2314 ncRNA 356-244 chr2 67539317 67539649 + 2 NA Intergenic L1PB3|LINE|L1 142150 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 517-270 chr8 116333840 116334347 + 2 NA Intergenic L1ME4a|LINE|L1 -9034 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 454-118 chr17 52558620 52558989 + 2 NA Intergenic MIR3|SINE|MIR 168282 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 188-161 chr5 29674831 29674984 + 2 NA Intergenic L1MB7|LINE|L1 -205653 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 540-235 chrX 74171547 74171948 + 2 NA intron (NR_028379, intron 5 of 6) L1M3de|LINE|L1 46714 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 169-141 chr8 131609537 131609677 + 2 NA Intergenic Intergenic -294486 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 282-283 chr22 43897620 43897853 + 2 NA Intergenic Intergenic -5723 NM_001177675 150379 Hs.248086 NM_138814 ENSG00000100341 PNPLA5 GS2L|dJ388M5|dJ388M5.4 patatin like phospholipase domain containing 5 protein-coding 242-400 chr8 106156894 106157109 + 2 NA Intergenic L1ME3G|LINE|L1 -96498 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 247-41 chr10 67614206 67614350 + 2 NA intron (NM_001127384, intron 2 of 17) LTR12B|LTR|ERV1 51382 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 256-30 chr10 6768602 6768803 + 2 NA Intergenic Intergenic 10478 NR_108074 100652997 Hs.255086 NR_108074 ENSG00000281186 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 347-301 chr3 56182444 56182639 + 2 NA intron (NR_132749, intron 3 of 17) MIR|SINE|MIR 285926 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 351-133 chr14 72040068 72040314 + 2 NA intron (NM_001370288, intron 2 of 16) L1MB2|LINE|L1 106664 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 303-155 chr16 13496582 13496768 + 2 NA Intergenic Intergenic -423482 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 508-169 chr4 70977578 70977960 + 2 NA intron (NM_173468, intron 4 of 5) AluJr|SINE|Alu -15880 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 352-571 chrX 3008198 3008396 + 2 NA intron (NM_001011719, intron 1 of 8) intron (NM_001011719, intron 1 of 8) 1684 NM_001011719 347527 Hs.351533 NM_001011719 ENSG00000205667 ARSH sulfatase arylsulfatase family member H protein-coding 310-397 chr5 41063195 41063478 + 2 NA intron (NM_173489, intron 5 of 41) MIR|SINE|MIR 8006 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 706-57 chr5 50736026 50736562 + 2 NA intron (NM_024615, intron 2 of 25) intron (NM_024615, intron 2 of 25) 68880 NM_001331028 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 318-235 chr19 35799666 35799903 + 2 NA TTS (NM_021232) TTS (NM_021232) -1875 NR_104176 644050 Hs.651888 NR_104176 ENSG00000225872 LINC01529 - long intergenic non-protein coding RNA 1529 ncRNA 210-122 chr2 45909331 45909501 + 2 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 257741 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 341-176 chr15 94481874 94482139 + 2 NA 3' UTR (NM_001159643, exon 20 of 20) 3' UTR (NM_001159643, exon 20 of 20) 126076 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 384-207 chr21 26289056 26289355 + 2 NA Intergenic Intergenic -104430 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 365-42 chr10 32806985 32807201 + 2 NA intron (NM_001321115, intron 31 of 43) L1M4b|LINE|L1 94379 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 402-196 chr21 40330060 40330285 + 2 NA intron (NR_073202, intron 8 of 32) (AT)n|Simple_repeat|Simple_repeat -52911 NR_038898 100506492 Hs.667053 NR_038896 ENSG00000235123 DSCAM-AS1 M41 DSCAM antisense RNA 1 ncRNA 204-90 chr14 66738693 66738828 + 2 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 231353 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 239-71 chr12 15304883 15305050 + 2 NA Intergenic L1M1|LINE|L1 -17542 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 557-70 chr17 58869224 58869630 + 2 NA intron (NM_014906, intron 1 of 6) MSTB1|LTR|ERVL-MaLR 113558 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 333-419 chr4 164067569 164067834 + 2 NA intron (NM_001166373, intron 2 of 7) L1PA16|LINE|L1 130010 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 756-14 chr14 68727892 68728369 + 2 NA Intergenic Intergenic 65784 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 272-100 chr13 38896620 38896793 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -69115 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 584-148 chr6 63886720 63887133 + 2 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 80090 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 149-91 chr7 11324459 11324596 + 2 NA Intergenic L1MDa|LINE|L1 350655 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 274-400 chr8 124935678 124935875 + 2 NA Intergenic L1MC5|LINE|L1 -6232 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 1167-4 chr11 90987541 90988330 + 2 NA Intergenic L1MA7|LINE|L1 -118733 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 324-557 chr8 139202356 139202582 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -288428 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 350-442 chr6 68122441 68122639 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 67189 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 270-376 chr8 34120925 34121131 + 2 NA Intergenic Intergenic -520922 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 383-414 chr9 81445528 81445726 + 2 NA Intergenic L1M4|LINE|L1 243908 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 205-42 chr10 108207531 108207671 + 2 NA Intergenic Intergenic -138308 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 284-186 chr2 14130452 14130686 + 2 NA Intergenic Intergenic 270389 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 243-183 chr18 78136508 78136676 + 2 NA Intergenic MLT2B1|LTR|ERVL -142865 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 612-37 chr14 39997205 39997566 + 2 NA Intergenic L2a|LINE|L2 -564885 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 223-289 chr5 137638188 137638385 + 2 NA intron (NM_017415, intron 10 of 14) intron (NM_017415, intron 10 of 14) 9363 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 257-120 chr14 86850913 86851073 + 2 NA Intergenic Intergenic -54785 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 215-73 chr14 25558875 25559061 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -508671 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 315-346 chr4 103644194 103644496 + 2 NA intron (NM_001059, intron 3 of 4) intron (NM_001059, intron 3 of 4) 75640 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 395-277 chr5 113383711 113383951 + 2 NA intron (NM_001085377, intron 2 of 18) intron (NM_001085377, intron 2 of 18) 51158 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 372-29 chr1 194618878 194619169 + 2 NA Intergenic L1M3c|LINE|L1 1314278 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 220-275 chr5 18315519 18315672 + 2 NA Intergenic Intergenic 508321 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 128-53 chr5 116643221 116643293 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -68434 NM_020796 57556 Hs.156967 NM_020681 ENSG00000092421 SEMA6A HT018|SEMA|SEMA6A1|SEMAQ|VIA semaphorin 6A protein-coding 402-274 chr5 83662544 83662836 + 2 NA intron (NM_001884, intron 2 of 4) intron (NM_001884, intron 2 of 4) 58165 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 306-184 chr16 55695092 55695372 + 2 NA intron (NM_001172504, intron 6 of 13) intron (NM_001172504, intron 6 of 13) 23561 NM_001172502 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 236-266 chr4 139066805 139067015 + 2 NA intron (NM_001371339, intron 7 of 9) intron (NM_001371339, intron 7 of 9) 17314 NM_001276459 1998 Hs.634040 NM_006874 ENSG00000109381 ELF2 EU32|NERF|NERF-1A|NERF-1B|NERF-1a,b|NERF-2 E74 like ETS transcription factor 2 protein-coding 383-360 chr7 64095652 64095868 + 2 NA Intergenic AluJb|SINE|Alu 50326 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 414-181 chr20 1381033 1381403 + 2 NA intron (NM_054014, intron 2 of 3) L1ME1|LINE|L1 11743 NR_106929 102465524 NR_106929 ENSG00000284436 MIR6869 hsa-mir-6869 microRNA 6869 ncRNA 357-326 chr5 6946770 6947019 + 2 NA Intergenic Intergenic -118973 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 387-152 chr19 28294457 28294837 + 2 NA Intergenic Intergenic -312041 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 208-72 chr14 42844287 42844433 + 2 NA Intergenic L1MA1|LINE|L1 1237504 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 339-584 chr8 115085395 115085583 + 2 NA Intergenic MIRb|SINE|MIR 582524 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 306-333 chr3 175467751 175468023 + 2 NA intron (NM_207015, intron 8 of 13) intron (NM_207015, intron 8 of 13) 98347 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 406-286 chr8 15996702 15996935 + 2 NA Intergenic Intergenic 189454 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 260-263 chr3 35559043 35559245 + 2 NA Intergenic L1M2|LINE|L1 -80381 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 204-77 chr13 88643454 88643613 + 2 NA Intergenic LTR27D|LTR|ERV1 16680 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 147-92 chrX 43242169 43242280 + 2 NA Intergenic L1M5|LINE|L1 65230 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 704-59 chr4 40281959 40282332 + 2 NA Intergenic LTR79|LTR|ERVL -25040 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 382-11 chr1 107206070 107206282 + 2 NA intron (NM_001113226, intron 1 of 6) L1ME3A|LINE|L1 58107 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 549-58 chr14 47267412 47267714 + 2 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 75683 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 329 chr1 18183002 18183227 + 2 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 75316 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 337-263 chr2 114343798 114344094 + 2 NA Intergenic L1MA7|LINE|L1 -98695 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 321-256 chr18 78065347 78065577 + 2 NA Intergenic L1MEc|LINE|L1 -71735 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 207-272 chr7 70850383 70850528 + 2 NA Intergenic AluYm1|SINE|Alu -281689 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 260-313 chr4 78660759 78660938 + 2 NA intron (NR_038306, intron 2 of 2) Tigger7|DNA|TcMar-Tigger 14854 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 295-436 chr7 43703136 43703341 + 2 NA intron (NR_163914, intron 1 of 8) L1PA15|LINE|L1 26285 NR_135583 55744 Hs.268887 NM_018224 ENSG00000106603 COA1 C7orf44|MITRAC15 cytochrome c oxidase assembly factor 1 homolog protein-coding 394-306 chr7 54129971 54130244 + 2 NA Intergenic LTR86C|LTR|ERVL -200590 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 213-39 chr10 55137284 55137406 + 2 NA intron (NM_001354404, intron 3 of 34) Tigger3a|DNA|TcMar-Tigger -336054 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 388-149 chr2 16701411 16701651 + 2 NA Intergenic L1M5|LINE|L1 -35697 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 499-267 chr8 105164475 105164837 + 2 NA Intergenic Intergenic -153782 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 151-71 chr6 72176635 72176729 + 2 NA intron (NM_014989, intron 4 of 33) intron (NM_014989, intron 4 of 33) -36211 NM_001350429 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 204-217 chr4 65393143 65393287 + 2 NA intron (NM_001281767, intron 8 of 16) MLT1K|LTR|ERVL-MaLR 276273 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 456-33 chr10 57963760 57964035 + 2 NA Intergenic AluJr|SINE|Alu 303997 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 384-211 chr22 27690240 27690460 + 2 NA Intergenic L1MEd|LINE|L1 111406 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 331-238 chr19 48015186 48015375 + 2 NA intron (NM_022142, intron 3 of 6) Tigger2|DNA|TcMar-Tigger 20648 NM_022142 64100 Hs.104894 NM_022142 ENSG00000169393 ELSPBP1 E12|EDDM12|EL149|HE12 epididymal sperm binding protein 1 protein-coding 272-143 chr16 59656822 59656994 + 2 NA Intergenic L1MC4|LINE|L1 98283 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 386-243 chr3 105493057 105493264 + 2 NA intron (NM_001243280, intron 1 of 14) MIR3|SINE|MIR 126251 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 237-136 chr16 73985818 73986010 + 2 NA Intergenic L1M4b|LINE|L1 229607 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 325-203 chr16 77095855 77096048 + 2 NA Intergenic Intergenic -95239 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 597-109 chr5 98231075 98231404 + 2 NA Intergenic L1MA9|LINE|L1 -70000 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 297-129 chr14 44886316 44886485 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -10875 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 255-49 chr11 13763328 13763540 + 2 NA Intergenic L2a|LINE|L2 -20952 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 511-289 chrX 97974254 97974706 + 2 NA Intergenic Intergenic -409945 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 868-6 chr11 99150444 99151106 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 129826 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 883 chr1 215924107 215924708 + 2 NA intron (NM_206933, intron 38 of 71) intron (NM_206933, intron 38 of 71) -148058 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 251-74 chr12 114881900 114882037 + 2 NA Intergenic AluJb|SINE|Alu -197793 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 333-426 chr5 7204035 7204289 + 2 NA Intergenic L2|LINE|L2 65192 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 247-171 chr18 73324178 73324359 + 2 NA promoter-TSS (NR_038340) promoter-TSS (NR_038340) -673 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 178-29 chr11 20647950 20648118 + 2 NA intron (NM_004211, intron 14 of 15) intron (NM_004211, intron 14 of 15) -21517 NM_001288714 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 216-129 chr16 74317184 74317346 + 2 NA Intergenic MIR|SINE|MIR 20451 NM_002811 5713 Hs.440604 NM_002811 ENSG00000103035 PSMD7 MOV34|P40|Rpn8|S12 proteasome 26S subunit, non-ATPase 7 protein-coding 654-26 chr11 116288139 116288628 + 2 NA Intergenic Intergenic -351039 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 412-81 chr13 65580570 65580958 + 2 NA Intergenic L1MEd|LINE|L1 -285283 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 324-144 chr13 86833771 86834030 + 2 NA Intergenic L1MA9|LINE|L1 -78020 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 440-10 chr1 168647990 168648250 + 2 NA Intergenic Intergenic 71515 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 935-37 chr7 31515987 31516709 + 2 NA intron (NM_001257967, intron 1 of 14) intron (NM_001257967, intron 1 of 14) -1016 NR_047565 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 387-237 chr3 179494939 179495259 + 2 NA Intergenic L1M2c|LINE|L1 -43629 NM_021629 59345 Hs.173030 NM_021629 ENSG00000114450 GNB4 CMTD1F G protein subunit beta 4 protein-coding 358-203 chr2 60362835 60363187 + 2 NA intron (NR_132992, intron 1 of 1) intron (NR_132992, intron 1 of 1) 20025 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 352-578 chrX 148480209 148480528 + 2 NA Intergenic L1MC4|LINE|L1 -20249 NM_001169125 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 133-48 chr3 95948564 95948663 + 2 NA Intergenic L1MA6|LINE|L1 -265420 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 283-434 chr8 70427740 70427967 + 2 NA Intergenic Intergenic -23636 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 369-380 chr7 13459241 13459452 + 2 NA Intergenic LTR41|LTR|ERVL 527168 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 305-242 chr2 31198878 31199116 + 2 NA intron (NM_001145122, intron 7 of 21) L2c|LINE|L2 18518 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 464-38 chr11 127596297 127596689 + 2 NA Intergenic Intergenic 325423 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 367-216 chr2 118715187 118715509 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -112382 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 217-315 chr5 155233506 155233678 + 2 NA Intergenic Intergenic 219837 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 494-157 chr20 60990567 60990997 + 2 NA Intergenic Intergenic -88282 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 298-228 chr2 125853575 125853762 + 2 NA Intergenic Intergenic 264317 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 719-39 chr2 102311828 102312346 + 2 NA intron (NM_001282408, intron 1 of 6) (TATAATA)n|Simple_repeat|Simple_repeat 524 NM_016232 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 516-222 chr6 7792923 7793257 + 2 NA intron (NM_001718, intron 1 of 6) MamGypLTR2b|LTR|Gypsy 66991 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 302-496 chrX 67789461 67789658 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 244936 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 170-124 chr6 128613370 128613528 + 2 NA Intergenic L1MB2|LINE|L1 -92850 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 143-65 chr5 4707860 4707992 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie -65555 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 536-136 chr2 204999172 204999689 + 2 NA intron (NM_205863, intron 3 of 21) intron (NM_205863, intron 3 of 21) 453955 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 241-270 chr4 72706600 72706801 + 2 NA Intergenic Intergenic -137479 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 530-108 chr19 37242651 37243148 + 2 NA exon (NM_001345947, exon 5 of 5) exon (NM_001345947, exon 5 of 5) -8986 NR_110719 101927667 Hs.633102 NR_110718 ENSG00000226686 LINC01535 - long intergenic non-protein coding RNA 1535 ncRNA 193-118 chr2 151905642 151905829 + 2 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 66317 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 373-18 chr1 91296391 91296729 + 2 NA intron (NM_001017975, intron 30 of 38) L1ME3A|LINE|L1 108277 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 533-184 chr5 68812457 68812811 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 217293 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 326-176 chr15 81139544 81139835 + 2 NA intron (NM_173528, intron 4 of 6) L1ME4c|LINE|L1 5419 NM_001353365 161502 Hs.130979 NM_173528 ENSG00000156206 CFAP161 C15orf26 cilia and flagella associated protein 161 protein-coding 132-10 chr10 85497531 85497610 + 2 NA Intergenic L1ME3B|LINE|L1 47978 NR_120671 101929684 Hs.554059 NR_120671 ENSG00000230962 LINC01520 - long intergenic non-protein coding RNA 1520 ncRNA 388-246 chr4 35249527 35249842 + 2 NA Intergenic Intergenic -979937 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 374-76 chr12 111302929 111303164 + 2 NA intron (NM_015267, intron 9 of 21) AluSz6|SINE|Alu -1096 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 244-120 chr16 50671692 50671930 + 2 NA TTS (NR_110908) TTS (NR_110908) 2956 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 274-205 chr2 59225068 59225238 + 2 NA intron (NR_110219, intron 1 of 2) intron (NR_110219, intron 1 of 2) 7445 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 465-174 chr3 85231424 85231691 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -154153 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 428-135 chr2 114315907 114316179 + 2 NA Intergenic HERVL-int|LTR|ERVL -126598 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 329-203 chr16 49415584 49415764 + 2 NA Intergenic L2b|LINE|L2 41870 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 338-271 chr2 128493969 128494200 + 2 NA Intergenic MIRb|SINE|MIR -175216 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 413-325 chr9 90587328 90587718 + 2 NA Intergenic Intergenic -4777 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 213-246 chr5 169285255 169285378 + 2 NA intron (NM_003062, intron 1 of 35) intron (NM_003062, intron 1 of 35) 15823 NM_003062 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 594-42 chr13 79087644 79088126 + 2 NA Intergenic Intergenic -247835 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 338-534 chr8 55737455 55737718 + 2 NA Intergenic AluJb|SINE|Alu 35792 NM_001363177 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 734-48 chr3 108766782 108767432 + 2 NA Intergenic L2c|LINE|L2 -9824 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 563-142 chr4 127154724 127155165 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -478013 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 362-22 chr1 99464121 99464432 + 2 NA Intergenic L2a|LINE|L2 23528 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 327-234 chr2 11627635 11627932 + 2 NA intron (NM_014668, intron 25 of 32) intron (NM_014668, intron 25 of 32) 42412 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 252-281 chr3 164485666 164485898 + 2 NA Intergenic Intergenic -314226 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 273-107 chr12 99934901 99935148 + 2 NA intron (NM_152788, intron 1 of 25) intron (NM_152788, intron 1 of 25) 49630 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 375-218 chr2 123140594 123140962 + 2 NA Intergenic Intergenic -67297 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 281-88 chr12 55088119 55088279 + 2 NA Intergenic Intergenic -41570 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 181-95 chr3 88315200 88315355 + 2 NA Intergenic Intergenic -23179 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 232-308 chr5 80322068 80322226 + 2 NA TTS (NM_032567) TTS (NM_032567) 2145 NM_032567 84654 Hs.519403 NM_032567 ENSG00000164299 SPZ1 CILD38|NYD-TSP1|PPP1R148 spermatogenic leucine zipper 1 protein-coding 229-408 chr9 20088502 20088690 + 2 NA Intergenic L1PREC2|LINE|L1 -301577 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 293-410 chr7 87996272 87996456 + 2 NA intron (NM_001324421, intron 3 of 28) MLT1A0|LTR|ERVL-MaLR 62113 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 362-253 chr21 36582758 36583098 + 2 NA Intergenic Intergenic -6359 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 369-130 chr15 37382314 37382639 + 2 NA Intergenic Intergenic -281165 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 390-65 chr12 1163210 1163500 + 2 NA intron (NR_027948, intron 7 of 19) intron (NR_027948, intron 7 of 19) 135607 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 383-93 chr13 37774567 37774868 + 2 NA intron (NM_003306, intron 2 of 10) intron (NM_003306, intron 2 of 10) 95708 NM_001135956 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 348-36 chr1 231686461 231686802 + 2 NA intron (NM_001164556, intron 1 of 4) THE1A-int|LTR|ERVL-MaLR 59816 NM_001164556 27185 Hs.13318 NM_018662 ENSG00000162946 DISC1 C1orf136|SCZD9 DISC1 scaffold protein protein-coding 385-85 chr13 79495834 79496111 + 2 NA intron (NM_019080, intron 1 of 7) L1MEf|LINE|L1 -14741 NR_046685 100874208 Hs.602801 NR_046685 ENSG00000232132 NDFIP2-AS1 - NDFIP2 antisense RNA 1 ncRNA 302-387 chr6 71101506 71101677 + 2 NA Intergenic L1PB2|LINE|L1 -144531 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 226-240 chr3 166787101 166787279 + 2 NA Intergenic Intergenic -111493 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 317-128 chr13 90103768 90104021 + 2 NA intron (NR_047489, intron 3 of 5) L1MA4A|LINE|L1 15823 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 689-53 chr2 152840533 152841094 + 2 NA Intergenic L1M3|LINE|L1 122176 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 205-16 chr1 118334392 118334548 + 2 NA Intergenic Intergenic -149242 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 242-336 chr6 28126487 28126612 + 2 NA intron (NM_001320558, intron 2 of 2) L3|LINE|CR1 1940 NM_001320556 80345 Hs.656641 NM_025231 ENSG00000196812 ZSCAN16 ZNF392|ZNF435|dJ265C24.3 zinc finger and SCAN domain containing 16 protein-coding 461-147 chr2 206386702 206387012 + 2 NA Intergenic L1ME1|LINE|L1 -56675 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 256-55 chr10 109335240 109335422 + 2 NA Intergenic L1MEf|LINE|L1 587915 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 335-482 chr7 1684698 1684980 + 2 NA Intergenic L1MB8|LINE|L1 -3280 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 328-371 chr3 151774396 151774638 + 2 NA intron (NR_026915, intron 1 of 2) L2|LINE|L2 4061 NR_026915 201651 Hs.383050 NR_026915 ENSG00000240602 AADACP1 - arylacetamide deacetylase pseudogene 1 pseudo 737-56 chr3 17239192 17239830 + 2 NA intron (NM_014744, intron 16 of 21) L2|LINE|L2 306315 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 349-439 chr6 22399131 22399387 + 2 NA Intergenic Intergenic -96424 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 588-166 chr8 138560486 138560851 + 2 NA Intergenic Intergenic -62938 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 446-145 chr2 62764747 62765117 + 2 NA intron (NM_001142615, intron 4 of 22) intron (NM_001142615, intron 4 of 22) 58035 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 299-391 chr6 16028500 16028760 + 2 NA Intergenic L1ME3B|LINE|L1 -100456 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 445-113 chr2 14736851 14737286 + 2 NA Intergenic Intergenic 104351 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 291-119 chr14 44543585 44543851 + 2 NA Intergenic L1MA9|LINE|L1 36309 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 172-132 chr8 82462751 82462902 + 2 NA Intergenic Intergenic -449278 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 696-32 chr12 73425909 73426486 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 267007 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 545-143 chr3 97187687 97188054 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -251737 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 189-83 chr19 52116654 52116785 + 2 NA non-coding (NR_135823, exon 5 of 5) non-coding (NR_135823, exon 5 of 5) -20954 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 235-376 chr8 131665014 131665224 + 2 NA Intergenic L1M4|LINE|L1 -238974 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 234-189 chr2 138750127 138750304 + 2 NA intron (NM_007226, intron 1 of 1) intron (NM_007226, intron 1 of 1) 30175 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 303-503 chrX 41023728 41023930 + 2 NA Intergenic L1MC5|LINE|L1 -61616 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 231-302 chr6 3525426 3525602 + 2 NA Intergenic Intergenic -68955 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 329-22 chr1 166480679 166480908 + 2 NA intron (NR_146890, intron 1 of 2) intron (NR_146890, intron 1 of 2) 9246 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 227-146 chr18 64401980 64402156 + 2 NA intron (NR_033881, intron 5 of 9) L2a|LINE|L2 -142013 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 540-232 chrX 57756395 57756893 + 2 NA Intergenic L1MA2|LINE|L1 -76384 NM_001319967 286430 Hs.306842 NM_001319967 ENSG00000215174 NLRP2B CLRX.1|NALP2P|NLRP2P|NOD24|POP4 NLR family pyrin domain containing 2B protein-coding 783-58 chr5 9984772 9985341 + 2 NA Intergenic Intergenic -81232 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 571-18 chr10 65302047 65302602 + 2 NA Intergenic Intergenic -269101 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 326-359 chr3 156873395 156873607 + 2 NA intron (NM_001004316, intron 3 of 12) L1MA4A|LINE|L1 47148 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 289-109 chr12 65060030 65060259 + 2 NA intron (NM_007191, intron 7 of 9) L1MB7|LINE|L1 61161 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 488-203 chr5 26505218 26505671 + 2 NA Intergenic Intergenic 533142 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 260-58 chr10 81808191 81808347 + 2 NA Intergenic L1MC1|LINE|L1 -66925 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 127-34 chr16 61286041 61286132 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -230320 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 144-84 chr5 120883533 120883636 + 2 NA Intergenic L1ME3A|LINE|L1 352120 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 356-451 chr7 43361364 43361673 + 2 NA intron (NM_001287059, intron 5 of 27) MIR3|SINE|MIR 161024 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 665-58 chr22 47819865 47820351 + 2 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 188434 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 276-144 chr14 45918553 45918816 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -145475 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 205-179 chr3 33635629 33635822 + 2 NA intron (NM_015097, intron 8 of 38) intron (NM_015097, intron 8 of 38) 23954 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 321-427 chr4 77584976 77585237 + 2 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 73353 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 349-318 chr3 4623241 4623520 + 2 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 128210 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 112-20 chr18 6029604 6029682 + 2 NA 3' UTR (NM_001365767, exon 17 of 17) 3' UTR (NM_001365767, exon 17 of 17) -133689 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 463-291 chr8 119464340 119464617 + 2 NA Intergenic L1PA13|LINE|L1 48032 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 227-209 chr21 20204218 20204391 + 2 NA Intergenic Intergenic 54381 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 329-236 chr18 45683515 45683829 + 2 NA TTS (NM_001242692) TTS (NM_001242692) -40509 NM_001128588 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 294-285 chr3 27336203 27336378 + 2 NA intron (NM_152534, intron 6 of 38) L1M2|LINE|L1 33093 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 250-24 chr1 186470533 186470711 + 2 NA TTS (NR_126002) TTS (NR_126002) -9508 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 772-58 chr8 138393497 138393956 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 103535 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 338-170 chr14 76033430 76033676 + 2 NA intron (NR_045664, intron 3 of 7) intron (NR_045664, intron 3 of 7) 47790 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 325-472 chr6 33954264 33954434 + 2 NA Intergenic AluSc|SINE|Alu 45702 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 317-186 chr17 52751718 52752015 + 2 NA Intergenic MER52C|LTR|ERV1 -110255 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 356-175 chr16 12749131 12749485 + 2 NA intron (NM_018340, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 28987 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 260-212 chr2 90203885 90204046 + 2 NA Intergenic L1MDa|LINE|L1 -566058 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 335-206 chr18 7328680 7328990 + 2 NA Intergenic Intergenic 97731 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 382-74 chr12 17437039 17437394 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 151862 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 122-8 chr11 81444661 81444751 + 2 NA Intergenic Intergenic 446130 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 329-20 chr1 162914665 162914835 + 2 NA Intergenic MIRc|SINE|MIR -45935 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 307-509 chr9 21982783 21983033 + 2 NA intron (NM_001363763, intron 1 of 2) MIR|SINE|MIR -7775 NM_000077 1029 Hs.512599 NM_000077 ENSG00000147889 CDKN2A ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 cyclin dependent kinase inhibitor 2A protein-coding 426-61 chr12 31883671 31884043 + 2 NA intron (NR_135029, intron 1 of 1) L1ME3G|LINE|L1 3346 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 263-373 chr6 146709876 146710106 + 2 NA intron (NM_024694, intron 13 of 35) L1MA8|LINE|L1 93833 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 369-259 chr3 32101882 32102162 + 2 NA Intergenic L1ME3E|LINE|L1 -4489 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 704-50 chr3 19405431 19406106 + 2 NA intron (NM_144633, intron 7 of 15) MIR3|SINE|MIR -90837 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 370-420 chr7 64703882 64704107 + 2 NA intron (NM_016220, intron 6 of 6) L1M4c|LINE|L1 24930 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 242-184 chr2 71972350 71972519 + 2 NA Intergenic Intergenic 175428 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 338-195 chr16 59964291 59964592 + 2 NA intron (NR_110917, intron 1 of 3) AluSx|SINE|Alu 109088 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 333-198 chr17 77766731 77766937 + 2 NA Intergenic Intergenic -38275 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 210-271 chr7 78387972 78388128 + 2 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 40808 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 566-98 chr2 132879755 132880176 + 2 NA intron (NM_207481, intron 8 of 17) L1MA4A|LINE|L1 -35592 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 319-253 chr2 108622615 108622789 + 2 NA intron (NM_001193484, intron 1 of 9) intron (NM_001193484, intron 1 of 9) 1451 NM_001193484 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 321-288 chr2 80457475 80457679 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 144198 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 531-182 chr4 81176564 81176958 + 2 NA intron (NR_125908, intron 3 of 4) intron (NR_125908, intron 3 of 4) 11821 NR_125908 101928942 Hs.664002 NR_125908 ENSG00000251059 LOC101928942 - uncharacterized LOC101928942 ncRNA 385-179 chr2 106908100 106908421 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -21151 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 532-193 chr4 109602480 109602921 + 2 NA intron (NM_017918, intron 1 of 7) L1MA2|LINE|L1 42454 NM_017918 55013 Hs.234149 NM_017918 ENSG00000005059 MCUB CCDC109B mitochondrial calcium uniporter dominant negative beta subunit protein-coding 242-186 chr2 76971105 76971311 + 2 NA intron (NR_146416, intron 1 of 1) MER5A|DNA|hAT-Charlie -14757 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 217-330 chr6 120657230 120657390 + 2 NA Intergenic Intergenic 642131 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 431-84 chr14 71823112 71823424 + 2 NA Intergenic Intergenic -108903 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 303-426 chr7 48220533 48220708 + 2 NA intron (NM_152701, intron 4 of 61) intron (NM_152701, intron 4 of 61) 49162 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 363-336 chr4 91951288 91951526 + 2 NA Intergenic Intergenic 325895 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 275-20 chr1 185356945 185357189 + 2 NA Intergenic L1ME4a|LINE|L1 -22028 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 409-55 chr12 64821384 64821678 + 2 NA intron (NM_001330188, intron 3 of 13) intron (NM_001330188, intron 3 of 13) -3116 NM_001364838 23329 Hs.192492 NM_015279 ENSG00000111490 TBC1D30 - TBC1 domain family member 30 protein-coding 382-55 chr11 19943428 19943689 + 2 NA intron (NM_182964, intron 8 of 37) intron (NM_182964, intron 8 of 37) -78998 NM_001111019 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 294-45 chr10 80829851 80830016 + 2 NA Intergenic L1M1|LINE|L1 180136 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 388-97 chr13 91068891 91069173 + 2 NA Intergenic Intergenic 20585 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 371-91 chr13 32621408 32621643 + 2 NA intron (NM_015032, intron 1 of 34) L1ME3A|LINE|L1 35073 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 334-235 chr19 30993384 30993590 + 2 NA Intergenic L1MB8|LINE|L1 -174023 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 321-529 chr7 55815049 55815249 + 2 NA intron (NM_207366, intron 7 of 9) L1MA3|LINE|L1 47603 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 360-495 chr9 135396137 135396392 + 2 NA Intergenic Intergenic 53015 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 354-251 chr2 226294679 226294928 + 2 NA Intergenic Intergenic 152009 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 324-485 chr7 20110390 20110589 + 2 NA intron (NR_110114, intron 1 of 5) intron (NR_110114, intron 1 of 5) 29937 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 357-170 chr18 46607283 46607629 + 2 NA intron (NM_144612, intron 6 of 39) intron (NM_144612, intron 6 of 39) -48144 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 174-4 chr1 110699020 110699188 + 2 NA Intergenic L1MA9|LINE|L1 -24164 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 541-241 chr8 117927005 117927401 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -6290 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 441-140 chr20 5406944 5407283 + 2 NA Intergenic Intergenic 38635 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 306-232 chr2 47612816 47613096 + 2 NA Intergenic Intergenic -42625 NM_022055 56660 Hs.591586 NM_022055 ENSG00000184261 KCNK12 K2p12.1|THIK-2|THIK2 potassium two pore domain channel subfamily K member 12 protein-coding 350-367 chr4 149882627 149882823 + 2 NA Intergenic Intergenic -66882 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 422-159 chr2 184193358 184193710 + 2 NA Intergenic Intergenic -185441 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 387-311 chr6 71556303 71556552 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 135400 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 249-6 chr1 58213922 58214157 + 2 NA intron (NM_001353980, intron 1 of 5) L2|LINE|L2 36464 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 335-213 chr18 44057790 44058008 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 473798 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 513-56 chr12 20290251 20290682 + 2 NA Intergenic L1MC1|LINE|L1 -78779 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 350-483 chr7 83954823 83955165 + 2 NA TTS (NM_006080) TTS (NM_006080) 239795 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 449 chr1 48149440 48149796 + 2 NA intron (NR_026749, intron 7 of 9) L1M2|LINE|L1 32810 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 520-126 chr18 25493602 25493975 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -141622 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 324-449 chr6 19064854 19065052 + 2 NA Intergenic Intergenic 115527 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 252-461 chrX 70621853 70622024 + 2 NA intron (NM_001003811, intron 21 of 30) intron (NM_001003811, intron 21 of 30) -165944 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 249-158 chr17 82693995 82694146 + 2 NA intron (NM_006822, intron 1 of 5) AluSx|SINE|Alu 4628 NM_006822 10966 Hs.484068 NM_006822 ENSG00000141542 RAB40B RAR|SEC4L RAB40B, member RAS oncogene family protein-coding 428-309 chr8 131864547 131864906 + 2 NA Intergenic Intergenic -39367 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 688-88 chr5 118022470 118023004 + 2 NA intron (NR_104997, intron 2 of 2) L1MA9|LINE|L1 -259837 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 326-504 chr7 88175376 88175571 + 2 NA intron (NM_001324421, intron 26 of 28) intron (NM_001324421, intron 26 of 28) -41187 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 607-42 chr14 66943835 66944311 + 2 NA intron (NM_020806, intron 8 of 22) MER61-int|LTR|ERV1 -245367 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 381-277 chr4 92832987 92833241 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 528715 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 469-288 chr8 117532791 117533107 + 2 NA intron (NM_080651, intron 3 of 3) intron (NM_080651, intron 3 of 3) 12236 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 334-591 chrX 102044621 102044890 + 2 NA Intergenic L1PREC2|LINE|L1 -80924 NM_080390 140597 Hs.401835 NM_080390 ENSG00000184905 TCEAL2 MY0876G05|WEX1|my048 transcription elongation factor A like 2 protein-coding 295-457 chr7 153265562 153265766 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 146570 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 323-561 chr8 126151152 126151383 + 2 NA Intergenic L1PA16|LINE|L1 -174228 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 225-71 chr12 41656644 41656820 + 2 NA Intergenic Intergenic -107457 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 383-368 chr7 146797316 146797651 + 2 NA intron (NM_014141, intron 1 of 22) L2|LINE|L2 23212 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 394-160 chr2 42859172 42859535 + 2 NA Intergenic MER33|DNA|hAT-Charlie -66770 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 348-224 chr2 64438183 64438434 + 2 NA Intergenic Intergenic -15854 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 405-160 chr2 158077186 158077434 + 2 NA intron (NM_001135098, intron 2 of 8) L1MA2|LINE|L1 -24560 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 502-154 chr20 40367769 40368140 + 2 NA Intergenic AluSp|SINE|Alu 321282 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 383-405 chr8 139173981 139174236 + 2 NA Intergenic Intergenic -260067 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 254-176 chr2 7262186 7262426 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -158955 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 330-282 chr2 111664532 111664836 + 2 NA Intergenic Intergenic 106450 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 177-110 chr4 31176092 31176234 + 2 NA intron (NR_125935, intron 1 of 4) intron (NR_125935, intron 1 of 4) 5019 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 332-319 chr3 30473566 30473794 + 2 NA Intergenic Intergenic -45188 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 579-16 chr10 67249047 67249441 + 2 NA intron (NM_001127384, intron 5 of 17) L1MB7|LINE|L1 154166 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 271-43 chr10 42302535 42302768 + 2 NA Intergenic Intergenic 65394 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 352-458 chr6 67478725 67478981 + 2 NA Intergenic Intergenic -576498 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 389-198 chr2 229527498 229527800 + 2 NA intron (NM_139072, intron 5 of 12) intron (NM_139072, intron 5 of 12) 186906 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 232-95 chr14 47651354 47651578 + 2 NA intron (NM_001113498, intron 1 of 16) L2|LINE|L2 23488 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 304-426 chr5 106156069 106156289 + 2 NA Intergenic Intergenic 854835 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 518-210 chr4 91943124 91943628 + 2 NA Intergenic AluSc8|SINE|Alu 333926 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 949-11 chr2 52707167 52707873 + 2 NA Intergenic Intergenic -4905 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 258-123 chr14 53201756 53201925 + 2 NA Intergenic MIRb|SINE|MIR 48486 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 286-295 chr3 127905171 127905385 + 2 NA Intergenic Intergenic -9954 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 243-436 chr8 4667668 4667904 + 2 NA intron (NM_033225, intron 1 of 69) L1ME1|LINE|L1 327128 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 277-361 chr6 141307261 141307435 + 2 NA Intergenic Intergenic 623534 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 318-445 chr5 61208159 61208436 + 2 NA intron (NR_109908, intron 3 of 3) L2|LINE|L2 -45829 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 274-100 chr12 99128826 99129027 + 2 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) 25840 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 265-264 chr4 53461737 53461941 + 2 NA TTS (NM_030917) TTS (NM_030917) -38238 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 368-222 chr19 56885997 56886336 + 2 NA Intergenic MER31A|LTR|ERV1 45264 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 233-302 chr5 61905734 61905940 + 2 NA Intergenic Intergenic -170139 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 236-381 chr9 74239180 74239351 + 2 NA Intergenic L1MB4|LINE|L1 -132266 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 407-305 chr7 91377543 91377917 + 2 NA Intergenic Intergenic 113297 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 303-443 chr8 33386274 33386440 + 2 NA intron (NM_032664, intron 4 of 4) intron (NM_032664, intron 4 of 4) 86789 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 421-291 chr8 43634330 43634634 + 2 NA Intergenic ALR/Alpha|Satellite|centr 342040 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 380-369 chr7 70064659 70064890 + 2 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 466299 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 473-198 chr4 96480621 96481047 + 2 NA intron (NR_147149, intron 2 of 3) L1MA3|LINE|L1 170131 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 402-77 chr14 30176067 30176323 + 2 NA Intergenic MIRc|SINE|MIR -248348 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 330-416 chr5 41018864 41019150 + 2 NA exon (NM_173489, exon 25 of 42) exon (NM_173489, exon 25 of 42) 52335 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 288-344 chr5 140611959 140612133 + 2 NA Intergenic L3|LINE|CR1 21129 NM_000591 929 Hs.163867 NM_000591 ENSG00000170458 CD14 - CD14 molecule protein-coding 355-216 chr18 78860036 78860230 + 2 NA Intergenic Intergenic -120142 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 363-164 chr16 51242406 51242621 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -91241 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 355-196 chr17 58952472 58952660 + 2 NA intron (NM_014906, intron 1 of 6) L1M2c|LINE|L1 154314 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 440-178 chr4 31263061 31263440 + 2 NA Intergenic MER34|LTR|ERV1 92106 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 254-252 chr3 118305430 118305632 + 2 NA Intergenic Intergenic -336237 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 196-200 chr5 23534644 23534775 + 2 NA Intergenic Intergenic 27054 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 271-131 chr14 52639794 52639970 + 2 NA TTS (NM_014584) TTS (NM_014584) 55676 NM_014584 30001 Hs.525339 NM_014584 ENSG00000197930 ERO1A ERO1-L|ERO1-L-alpha|ERO1-alpha|ERO1L|ERO1LA|Ero1alpha endoplasmic reticulum oxidoreductase 1 alpha protein-coding 152-64 chr3 111251870 111251960 + 2 NA Intergenic Intergenic 180099 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 327-101 chr11 124498328 124498553 + 2 NA Intergenic Intergenic 45214 NM_001005195 219858 Hs.553634 NM_001005195 ENSG00000170953 OR8B12 OR11-317 olfactory receptor family 8 subfamily B member 12 protein-coding 250-235 chr2 238681275 238681431 + 2 NA Intergenic Intergenic -125854 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 297-37 chr1 239446276 239446502 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 59821 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 494-310 chr9 71068577 71068901 + 2 NA intron (NM_001366143, intron 1 of 25) MER5A|DNA|hAT-Charlie 52882 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 250-33 chr10 16371200 16371385 + 2 NA Intergenic AluSx|SINE|Alu -65651 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 193-101 chr2 52934868 52935016 + 2 NA Intergenic Intergenic -232327 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 375-441 chr9 28591912 28592176 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 127261 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 168-54 chr2 52892013 52892110 + 2 NA Intergenic L1M2|LINE|L1 -189446 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 212-277 chr6 46911563 46911726 + 2 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) 8173 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 407-308 chr7 109970209 109970479 + 2 NA Intergenic L1MA6|LINE|L1 -10131 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 438-201 chr4 109909957 109910306 + 2 NA Intergenic Intergenic -2752 NM_001357021 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 141-28 chr15 70923136 70923252 + 2 NA intron (NM_017691, intron 7 of 15) L1MEd|LINE|L1 30751 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 303-466 chr8 120172478 120172773 + 2 NA intron (NM_021110, intron 5 of 47) L1MEd|LINE|L1 47523 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 794-18 chr14 67867520 67868166 + 2 NA intron (NM_133509, intron 5 of 10) intron (NM_133509, intron 5 of 10) 44251 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 171-131 chr8 9026752 9026857 + 2 NA intron (NM_001354638, intron 6 of 7) Tigger4a|DNA|TcMar-Tigger -21641 NR_039804 100616350 NR_039804 ENSG00000263407 MIR4660 - microRNA 4660 ncRNA 499-254 chr8 10430929 10431280 + 2 NA Intergenic ERVL-int|LTR|ERVL -43461 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 316-469 chr5 170547166 170547368 + 2 NA intron (NM_001278339, intron 1 of 7) L1MEd|LINE|L1 43247 NM_014592 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 330-485 chr7 26883968 26884142 + 2 NA Intergenic L1M1|LINE|L1 -19465 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 508-234 chr8 87827584 87828031 + 2 NA Intergenic LTR37A|LTR|ERV1 46208 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 304-2 chr1 19825717 19825951 + 2 NA Intergenic AluSz|SINE|Alu -10551 NM_019062 54546 Hs.124835 NM_019062 ENSG00000178828 RNF186 - ring finger protein 186 protein-coding 187-27 chr10 125667177 125667324 + 2 NA intron (NM_001128202, intron 1 of 3) intron (NM_001128202, intron 1 of 3) 15913 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 534-140 chr20 9751214 9751671 + 2 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 87634 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 268-367 chr7 46847273 46847440 + 2 NA Intergenic Intergenic -150234 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 238-231 chr3 28233111 28233319 + 2 NA Intergenic Intergenic -8404 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 365-186 chr2 47207995 47208288 + 2 NA intron (NR_110208, intron 3 of 4) AluJr4|SINE|Alu -31205 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 231-382 chr9 108697377 108697575 + 2 NA Intergenic L1MD2|LINE|L1 158510 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 281-158 chr17 33343079 33343286 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -50194 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 404-24 chr1 217316965 217317305 + 2 NA Intergenic L1ME4a|LINE|L1 -179433 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 264-58 chr10 92398647 92398831 + 2 NA Intergenic L1MCa|LINE|L1 -19922 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 490-6 chr1 57487575 57488015 + 2 NA intron (NM_001353980, intron 4 of 5) Tigger3c|DNA|TcMar-Tigger -62874 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 431-170 chr22 36723866 36724226 + 2 NA intron (NR_134623, intron 2 of 3) MIR3|SINE|MIR 20170 NR_134623 105373021 Hs.401697 NR_134623 LOC105373021 - uncharacterized LOC105373021 ncRNA 266-332 chr5 57388825 57389017 + 2 NA Intergenic L1MC1|LINE|L1 93890 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 455-212 chr5 23337339 23337702 + 2 NA Intergenic Intergenic -170089 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 559-171 chr7 52838911 52839424 + 2 NA Intergenic Intergenic -196466 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 673-87 chr4 64614440 64615011 + 2 NA Intergenic Intergenic -205265 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 341-240 chr2 37803047 37803238 + 2 NA Intergenic LTR90A|LTR|LTR 26569 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 348-341 chr4 20828669 20828864 + 2 NA intron (NM_025221, intron 2 of 7) intron (NM_025221, intron 2 of 7) 21902 NM_147181 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 319-478 chr6 148008815 148008983 + 2 NA Intergenic Intergenic -263429 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 591-55 chr17 77173531 77174103 + 2 NA intron (NM_001143999, intron 3 of 16) HERVIP10B3-int|LTR|ERV1 -11396 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 254-350 chr6 78023843 78024080 + 2 NA Intergenic Intergenic 370922 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 119-10 chr10 83931146 83931241 + 2 NA Intergenic Intergenic -208316 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 428-201 chr3 176494774 176495041 + 2 NA Intergenic Intergenic -20196 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 282-279 chr22 34214080 34214242 + 2 NA Intergenic L1MEd|LINE|L1 -291273 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 503-161 chr2 166914795 166915133 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 26477 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 300-373 chr5 151613772 151614004 + 2 NA Intergenic Intergenic -44944 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 333-366 chr3 119284212 119284410 + 2 NA intron (NR_046574, intron 3 of 3) L1M2c|LINE|L1 -10072 NM_020754 57514 Hs.668218 NM_020754 ENSG00000031081 ARHGAP31 AOS1|CDGAP Rho GTPase activating protein 31 protein-coding 402-257 chr5 14907246 14907600 + 2 NA Intergenic AluSq2|SINE|Alu -35645 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 267-345 chr5 120710187 120710360 + 2 NA Intergenic Intergenic 178809 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 502-168 chr22 43692487 43692839 + 2 NA intron (NM_198856, intron 8 of 29) L1ME1|LINE|L1 119642 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 261-353 chr7 49713458 49713633 + 2 NA Intergenic Intergenic -60093 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 319-28 chr1 170408254 170408481 + 2 NA Intergenic Intergenic -123755 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 582-135 chr6 74896202 74896701 + 2 NA Intergenic L1MA4|LINE|L1 232331 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 265-37 chr10 67026512 67026713 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 14346 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 240-387 chr6 150299864 150300097 + 2 NA Intergenic Intergenic -69032 NR_134655 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 325-293 chr2 213520586 213520853 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 236255 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 238-306 chr5 150940518 150940709 + 2 NA intron (NR_026867, intron 4 of 4) L1MB8|LINE|L1 5971 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 274-72 chr11 58461006 58461184 + 2 NA Intergenic L1M5|LINE|L1 -20922 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 593-63 chr18 13303037 13303449 + 2 NA intron (NM_181482, intron 2 of 5) intron (NM_181482, intron 2 of 5) 25138 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 408-326 chr7 146840094 146840431 + 2 NA intron (NM_014141, intron 2 of 22) intron (NM_014141, intron 2 of 22) 65991 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 467-244 chr6 45842094 45842390 + 2 NA Intergenic MIR3|SINE|MIR 95355 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 466-204 chr5 53402821 53403190 + 2 NA Intergenic Intergenic -77624 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 245-174 chr19 36630266 36630467 + 2 NA 3' UTR (NM_032825, exon 5 of 5) 3' UTR (NM_032825, exon 5 of 5) 25053 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 189-170 chr5 171935331 171935464 + 2 NA intron (NM_033644, intron 1 of 12) L1MB8|LINE|L1 71476 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 318-504 chr7 44316287 44316516 + 2 NA intron (NM_172081, intron 1 of 18) L1MB4|LINE|L1 9193 NM_172084 816 Hs.351887 NM_001220 ENSG00000058404 CAMK2B CAM2|CAMK2|CAMKB|MRD54 calcium/calmodulin dependent protein kinase II beta protein-coding 345-353 chr3 79374070 79374313 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -37536 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 226-203 chr20 53666513 53666688 + 2 NA Intergenic Intergenic 58246 NR_134576 105372672 Hs.259350 NR_134576 ENSG00000235415 LOC105372672 - uncharacterized LOC105372672 ncRNA 717-76 chr7 40725395 40725817 + 2 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 254333 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 240-432 chr8 138080837 138081029 + 2 NA intron (NR_161374, intron 1 of 7) intron (NR_161374, intron 1 of 7) 2612 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 229-151 chr17 73673822 73673972 + 2 NA Intergenic Intergenic -29452 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 364-421 chr7 106273596 106273857 + 2 NA intron (NM_005746, intron 3 of 10) intron (NM_005746, intron 3 of 10) 11257 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 221-161 chr2 234163336 234163536 + 2 NA Intergenic Intergenic 112734 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 391-303 chr6 49282803 49283135 + 2 NA Intergenic Intergenic 180284 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 364-407 chr7 29295504 29295818 + 2 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -86691 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 285-159 chr18 4204785 4204980 + 2 NA intron (NM_001242761, intron 1 of 11) (T)n|Simple_repeat|Simple_repeat -59720 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 610-91 chr2 166097139 166097521 + 2 NA intron (NR_110260, intron 2 of 11) intron (NR_110260, intron 2 of 11) 15799 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 495-86 chr17 61222293 61222675 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 145220 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 288-200 chr2 102116617 102116882 + 2 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) 12145 NM_001320980 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 563-92 chr2 114235807 114236337 + 2 NA Intergenic Intergenic -206569 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 299-402 chr6 139205388 139205681 + 2 NA Intergenic L1PB2|LINE|L1 70454 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 244-188 chr2 226970988 226971170 + 2 NA intron (NM_001349069, intron 8 of 8) ORSL-2a|DNA|hAT-Tip100 135025 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 538-233 chr8 87571032 87571434 + 2 NA Intergenic Intergenic 302782 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 442-318 chr9 113016308 113016604 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -4264 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 261-245 chr3 96720334 96720588 + 2 NA Intergenic Intergenic -94133 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 429-118 chr17 34530153 34530496 + 2 NA Intergenic Intergenic 49045 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 297-2 chr1 23364661 23364867 + 2 NA intron (NM_001370652, intron 2 of 2) intron (NM_001370652, intron 2 of 2) 3622 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 529-35 chr11 81895715 81896077 + 2 NA intron (NR_120571, intron 6 of 7) MER5A|DNA|hAT-Charlie -5060 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 389-147 chr18 63294950 63295257 + 2 NA intron (NM_000633, intron 2 of 2) AluSg7|SINE|Alu 24277 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 423-29 chr10 78906820 78907187 + 2 NA Intergenic L2|LINE|L2 160445 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 402-361 chr9 12524195 12524561 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -169007 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 221-133 chr19 43983760 43983944 + 2 NA promoter-TSS (NM_198089) promoter-TSS (NM_198089) -318 NM_003445 7711 Hs.279567 NM_003445 ENSG00000204920 ZNF155 pHZ-96 zinc finger protein 155 protein-coding 505-117 chr18 3615992 3616431 + 2 NA intron (NM_001242761, intron 7 of 11) MLT1F|LTR|ERVL-MaLR 12474 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 366-111 chr12 103633975 103634218 + 2 NA intron (NM_017564, intron 6 of 68) L1MC5a|LINE|L1 46823 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 307-334 chr4 35446542 35446813 + 2 NA Intergenic L1M1|LINE|L1 797262 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 294-396 chr5 164919422 164919668 + 2 NA Intergenic L1M8|LINE|L1 449266 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 337-2 chr1 32125517 32125735 + 2 NA intron (NM_012316, intron 1 of 13) MER106B|DNA|hAT-Charlie 17570 NM_012316 23633 Hs.470588 NM_012316 ENSG00000025800 KPNA6 IPOA7|KPNA7 karyopherin subunit alpha 6 protein-coding 343-131 chr14 28156379 28156653 + 2 NA Intergenic Intergenic -483295 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 233-364 chr7 144618614 144618782 + 2 NA intron (NR_146936, intron 7 of 11) intron (NR_146936, intron 7 of 11) 120200 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 262-434 chr8 118655769 118655967 + 2 NA intron (NR_038210, intron 2 of 4) L1ME4a|LINE|L1 -33905 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 180-18 chr10 59929229 59929398 + 2 NA Intergenic L1MB7|LINE|L1 -22757 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 546-67 chr14 37947493 37947888 + 2 NA Intergenic L1PA13|LINE|L1 -45566 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 524-272 chr8 134111838 134112231 + 2 NA Intergenic Intergenic 225538 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 337-465 chr5 145304348 145304632 + 2 NA Intergenic MIRb|SINE|MIR 530852 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 310-451 chr6 78027975 78028269 + 2 NA Intergenic L3|LINE|CR1 375083 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 617-51 chr17 69786319 69786775 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -175160 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 355-430 chr6 45603952 45604159 + 2 NA Intergenic L1M4a2|LINE|L1 181780 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 248-73 chr11 128280801 128280992 + 2 NA Intergenic L1MEi|LINE|L1 72130 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 289-379 chr5 108778911 108779135 + 2 NA intron (NM_005246, intron 2 of 19) L1MC1|LINE|L1 30075 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 373-186 chr2 33905040 33905290 + 2 NA intron (NR_126403, intron 2 of 5) MIRb|SINE|MIR -162061 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 366-52 chr10 69783190 69783517 + 2 NA Intergenic Intergenic -18553 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 333-379 chr4 27857062 27857266 + 2 NA Intergenic L1M3f|LINE|L1 639685 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 417-102 chr16 52015186 52015449 + 2 NA Intergenic MER34A|LTR|ERV1 58618 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 414-141 chr2 4290445 4290809 + 2 NA Intergenic L2b|LINE|L2 316466 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 191-147 chr4 52277862 52278036 + 2 NA Intergenic L1PREC2|LINE|L1 226645 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 416-41 chr10 61585275 61585640 + 2 NA Intergenic L1PB4|LINE|L1 -77472 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 289-268 chr20 48006180 48006401 + 2 NA Intergenic Intergenic -16173 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 784-49 chr5 13202578 13203171 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -169988 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 390-302 chr5 123731672 123731987 + 2 NA Intergenic THE1-int|LTR|ERVL-MaLR 186412 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 257-336 chr5 136665590 136665780 + 2 NA Intergenic Intergenic -300209 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 162-33 chr14 43729655 43729758 + 2 NA Intergenic Intergenic 777577 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 303-78 chr11 111483752 111484033 + 2 NA intron (NM_017589, intron 5 of 5) L1MA2|LINE|L1 -26710 NR_147706 728196 Hs.363156 NR_147706 ENSG00000286028 LOC728196 - uncharacterized LOC728196 ncRNA 341-39 chr1 205896215 205896393 + 2 NA TTS (NR_046097) TTS (NR_046097) 6284 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 358-15 chr1 166233861 166234138 + 2 NA Intergenic L1PA11|LINE|L1 -67244 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 265-340 chr6 96131564 96131750 + 2 NA intron (NM_006581, intron 2 of 2) intron (NM_006581, intron 2 of 2) 115683 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 228-96 chr14 58950396 58950525 + 2 NA intron (NR_110547, intron 4 of 5) L1MEc|LINE|L1 122172 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 421-77 chr14 43393366 43393761 + 2 NA Intergenic Intergenic 1113720 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 306-303 chr3 29571399 29571674 + 2 NA intron (NM_001003792, intron 3 of 13) L1MA2|LINE|L1 290224 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 654-4 chr1 80140595 80141091 + 2 NA Intergenic Intergenic -394912 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 193-25 chr10 8744642 8744805 + 2 NA Intergenic Intergenic -150332 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 334-132 chr13 93019621 93019827 + 2 NA Intergenic L1ME3E|LINE|L1 -25617 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 245-300 chr6 51724674 51724914 + 2 NA intron (NM_170724, intron 60 of 60) MLT1D|LTR|ERVL-MaLR 102924 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 320-295 chr2 226487601 226487812 + 2 NA Intergenic Intergenic 171087 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 339-55 chr10 29195086 29195307 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -93874 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 278-47 chr11 9035369 9035602 + 2 NA intron (NM_001367977, intron 16 of 22) intron (NM_001367977, intron 16 of 22) -31484 NM_020645 56675 Hs.523467 NM_020645 ENSG00000175352 NRIP3 C11orf14|NY-SAR-105 nuclear receptor interacting protein 3 protein-coding 334-501 chr7 53713903 53714139 + 2 NA intron (NR_038371, intron 4 of 5) MLT1E2|LTR|ERVL-MaLR 97910 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 327-76 chr11 21646685 21646874 + 2 NA Intergenic Intergenic -546306 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 229-389 chr8 86757825 86757943 + 2 NA Intergenic Intergenic -14209 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 502-269 chr8 104917441 104917851 + 2 NA Intergenic Intergenic -328622 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 309-4 chr1 48889493 48889666 + 2 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -112610 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 204-261 chr6 164789877 164790023 + 2 NA Intergenic Intergenic 32113 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 238-74 chr11 101483297 101483526 + 2 NA intron (NM_004621, intron 4 of 12) intron (NM_004621, intron 4 of 12) 36494 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 439-104 chr17 14764064 14764380 + 2 NA Intergenic Intergenic -250583 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 340-183 chr16 9169714 9169938 + 2 NA Intergenic Intergenic 78182 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 137-78 chr5 149171306 149171435 + 2 NA intron (NM_001370418, intron 1 of 18) MIRb|SINE|MIR 29639 NM_001301028 22885 Hs.49688 NM_014945 ENSG00000173210 ABLIM3 HMFN1661 actin binding LIM protein family member 3 protein-coding 355-296 chr21 28623840 28624117 + 2 NA Intergenic L1PA7|LINE|L1 84660 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 170-132 chr7 134327559 134327672 + 2 NA Intergenic Intergenic -10685 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 778-10 chr10 70788432 70788998 + 2 NA Intergenic L1MDa|LINE|L1 -3296 NM_001318241 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 221-262 chr6 44797773 44797953 + 2 NA Intergenic MIRc|SINE|MIR -245982 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 426-150 chr2 168061638 168062054 + 2 NA intron (NM_013233, intron 14 of 17) MER5A|DNA|hAT-Charlie -120702 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 263-11 chr1 83107360 83107576 + 2 NA intron (NR_147074, intron 9 of 10) intron (NR_147074, intron 9 of 10) -121260 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 123-63 chr9 5379698 5379774 + 2 NA intron (NM_018465, intron 3 of 5) L1ME3G|LINE|L1 -39860 NM_006911 6013 Hs.368996 NM_006911 ENSG00000107018 RLN1 H1|H1RLX|RLXH1|bA12D24.3.1|bA12D24.3.2 relaxin 1 protein-coding 520-154 chr2 132836092 132836430 + 2 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -79296 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 323-390 chr5 8098022 8098324 + 2 NA Intergenic Intergenic 229025 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 513-150 chr2 161117140 161117632 + 2 NA Intergenic L1ME4c|LINE|L1 -19569 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 495-208 chr5 153389806 153390228 + 2 NA Intergenic L1MB7|LINE|L1 -100507 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 507-187 chr4 114430967 114431312 + 2 NA Intergenic L1PA15|LINE|L1 -167263 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 258-218 chr2 227153784 227153939 + 2 NA intron (NM_000092, intron 1 of 47) intron (NM_000092, intron 1 of 47) 10698 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 567-56 chr14 83261939 83262397 + 2 NA Intergenic L1MC1|LINE|L1 619536 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 370-415 chr7 37769169 37769504 + 2 NA Intergenic Intergenic -79261 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 516-144 chr2 219406438 219406838 + 2 NA Intergenic MIRb|SINE|MIR -6631 NM_001319116 23549 Hs.258551 NM_012100 ENSG00000123992 DNPEP ASPEP|DAP aspartyl aminopeptidase protein-coding 307-66 chr10 87889658 87889907 + 2 NA intron (NM_001304717, intron 2 of 9) L1ME4a|LINE|L1 26157 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 246-92 chr12 37380769 37380943 + 2 NA Intergenic ALR/Alpha|Satellite|centr -935918 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 256-32 chr10 16912856 16913069 + 2 NA intron (NM_001081, intron 48 of 66) L2a|LINE|L2 -95508 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 264-59 chr10 94027889 94028144 + 2 NA intron (NM_001288989, intron 1 of 32) MIR|SINE|MIR 34085 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 173-48 chr16 61375559 61375656 + 2 NA Intergenic Intergenic -319841 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 522-278 chrX 126445301 126445695 + 2 NA Intergenic L1PA14|LINE|L1 107316 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 286-394 chr6 88203182 88203462 + 2 NA Intergenic L1MA3|LINE|L1 -35973 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 374-241 chr3 34754125 34754484 + 2 NA Intergenic Intergenic 639719 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 247-252 chr3 23914199 23914372 + 2 NA intron (NM_020345, intron 1 of 4) intron (NM_020345, intron 1 of 4) -2260 NM_002948 6138 Hs.381219 NM_002948 ENSG00000174748 RPL15 DBA12|EC45|L15|RPL10|RPLY10|RPYL10 ribosomal protein L15 protein-coding 371-290 chr4 133209672 133209994 + 2 NA Intergenic Intergenic 60539 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 446-299 chr8 54608082 54608382 + 2 NA Intergenic AluSx3|SINE|Alu -7864 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 805-35 chr4 62421288 62421751 + 2 NA Intergenic HERVL-int|LTR|ERVL -259754 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 293-303 chr4 80284889 80285092 + 2 NA intron (NM_004464, intron 2 of 2) intron (NM_004464, intron 2 of 2) 16725 NM_001291812 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 568-44 chr13 109933234 109933599 + 2 NA Intergenic Intergenic -119869 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 313-101 chr12 9249596 9249775 + 2 NA intron (NR_137434, intron 4 of 6) L1PA11|LINE|L1 9682 NR_137436 100499405 Hs.182314 NR_036466 ENSG00000237248 LINC00987 - long intergenic non-protein coding RNA 987 ncRNA 479-249 chr8 105362882 105363288 + 2 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 43542 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 366-355 chr5 148656665 148656949 + 2 NA Intergenic Intergenic -2280 NM_000870 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 313-357 chr3 109053507 109053762 + 2 NA intron (NM_014429, intron 14 of 27) L1PA16|LINE|L1 -47822 NR_144461 100506506 Hs.278908 NR_144461 ENSG00000239314 MORC1-AS1 - MORC1 antisense RNA 1 ncRNA 597-58 chr17 57712713 57713210 + 2 NA Intergenic L1MC5|LINE|L1 32338 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 254-440 chr9 73307736 73307888 + 2 NA Intergenic Intergenic 155947 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 387-144 chr17 73517032 73517313 + 2 NA non-coding (NR_135635, exon 2 of 2) non-coding (NR_135635, exon 2 of 2) 3489 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 463-150 chr2 145617455 145617801 + 2 NA Intergenic LTR33|LTR|ERVL 949661 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 304-256 chr2 78000897 78001132 + 2 NA intron (NR_110288, intron 1 of 3) (ATTATG)n|Simple_repeat|Simple_repeat -45988 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 577-21 chr10 6841554 6842035 + 2 NA non-coding (NR_038291, exon 5 of 5) non-coding (NR_038291, exon 5 of 5) 62196 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 262-300 chr4 9945952 9946105 + 2 NA intron (NM_001001290, intron 6 of 12) intron (NM_001001290, intron 6 of 12) 75469 NM_020041 56606 Hs.444612 NM_020041 ENSG00000109667 SLC2A9 GLUT9|GLUTX|UAQTL2|URATv1 solute carrier family 2 member 9 protein-coding 507-264 chr8 131364079 131364553 + 2 NA Intergenic Intergenic -323407 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 244-95 chr14 69170302 69170468 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -17188 NM_001284206 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 344-371 chr5 6554414 6554642 + 2 NA Intergenic Intergenic -27608 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 329-38 chr1 239644092 239644256 + 2 NA intron (NM_001347716, intron 4 of 7) Charlie17b|DNA|hAT-Charlie 15101 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 162-41 chr16 26124365 26124523 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 99207 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 219-198 chr20 12386567 12386707 + 2 NA Intergenic Intergenic 468744 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 306-423 chr6 11285945 11286198 + 2 NA intron (NM_001142393, intron 2 of 7) L1ME1|LINE|L1 -53389 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 175-39 chr11 128087325 128087466 + 2 NA Intergenic L1MEc|LINE|L1 -121371 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 208-132 chr2 167521580 167521734 + 2 NA Intergenic Intergenic -297015 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 426-192 chr3 170621912 170622176 + 2 NA intron (NR_135556, intron 2 of 5) intron (NR_135556, intron 2 of 5) -35969 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 341-582 chrX 102620651 102620923 + 2 NA intron (NR_146584, intron 4 of 18) L1PREC2|LINE|L1 21272 NM_001350268 100528062 Hs.522729 NM_001199818 ENSG00000286237 ARMCX5-GPRASP2 ARMCX5-GPRASP2-BHLHB9-LINC00630|bHLHb9|p60TRP ARMCX5-GPRASP2 readthrough protein-coding 209-107 chr15 56346649 56346833 + 2 NA Intergenic L1MD1|LINE|L1 -18683 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 148-34 chr16 79753237 79753322 + 2 NA intron (NR_104663, intron 3 of 5) intron (NR_104663, intron 3 of 5) -17192 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 196-252 chr8 103524072 103524235 + 2 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -22243 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 580-118 chr3 109738846 109739245 + 2 NA Intergenic L1MA9|LINE|L1 136217 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 319-256 chr2 118286147 118286394 + 2 NA Intergenic MIRc|SINE|MIR -99884 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 250-406 chr7 107761351 107761566 + 2 NA non-coding (NR_024199, exon 7 of 7) non-coding (NR_024199, exon 7 of 7) -16877 NR_144537 101927974 Hs.432792 NR_144536 ENSG00000241764 LOC101927974 - uncharacterized LOC101927974 ncRNA 590-25 chr11 103225682 103226199 + 2 NA intron (NM_001377, intron 59 of 88) L1PB1|LINE|L1 116514 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 432-25 chr1 246989255 246989533 + 2 NA intron (NR_037892, intron 3 of 5) L1M1|LINE|L1 18663 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 415-82 chr15 72885216 72885569 + 2 NA Intergenic L1M5|LINE|L1 -101634 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 238-316 chr6 34614547 34614724 + 2 NA intron (NM_022758, intron 2 of 3) L1MC3|LINE|L1 -58302 NM_001252294 25803 Hs.485158 NM_012391 ENSG00000124664 SPDEF PDEF|bA375E1.3 SAM pointed domain containing ETS transcription factor protein-coding 281-222 chr2 120120582 120120802 + 2 NA intron (NM_001330310, intron 16 of 24) intron (NM_001330310, intron 16 of 24) 102708 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 354-14 chr1 84181009 84181244 + 2 NA promoter-TSS (NM_001242862) promoter-TSS (NM_001242862) -506 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 789-45 chr8 35898182 35898930 + 2 NA Intergenic Intergenic -188236 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 439-89 chr14 51618566 51618817 + 2 NA intron (NM_001042481, intron 2 of 14) L2a|LINE|L2 -18739 NR_051990 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 397-144 chr2 24119623 24119904 + 2 NA intron (NM_199346, intron 3 of 4) intron (NM_199346, intron 3 of 4) 3571 NM_199346 375189 Hs.442718 NM_199346 ENSG00000176732 PFN4 - profilin family member 4 protein-coding 424-20 chr10 15456464 15456827 + 2 NA Intergenic AluSc|SINE|Alu -85356 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 191-122 chr20 24069475 24069608 + 2 NA Intergenic L1MB7|LINE|L1 -80762 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 388-170 chr2 143822821 143823071 + 2 NA Intergenic Intergenic -114121 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 308-514 chr8 125263540 125263790 + 2 NA intron (NM_001349486, intron 5 of 7) AluSx|SINE|Alu -166693 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 246-389 chr8 35699707 35699876 + 2 NA intron (NM_001322818, intron 7 of 16) intron (NM_001322818, intron 7 of 16) 10529 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 234-148 chr18 73270272 73270421 + 2 NA Intergenic L1ME4b|LINE|L1 -5848 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 285-111 chr14 38523732 38523989 + 2 NA Intergenic Intergenic -267767 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 129 chr1 77678284 77678367 + 2 NA intron (NM_001308237, intron 1 of 13) intron (NM_001308237, intron 1 of 13) 4333 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 328-141 chr14 38517097 38517340 + 2 NA Intergenic L1ME3B|LINE|L1 -261125 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 601-10 chr10 19727271 19727633 + 2 NA intron (NR_120646, intron 1 of 4) intron (NR_120646, intron 1 of 4) 1098 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 539-114 chr2 81268751 81269123 + 2 NA Intergenic L1MB2|LINE|L1 198009 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 216-198 chr21 19124577 19124782 + 2 NA Intergenic HAL1b|LINE|L1 -364867 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 273-473 chr9 110606544 110606792 + 2 NA Intergenic Intergenic -26927 NM_153366 79987 Hs.522334 NM_153366 ENSG00000165124 SVEP1 C9orf13|CCP22|POLYDOM|SEL-OB|SELOB sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1 protein-coding 475-103 chr16 81746911 81747208 + 2 NA Intergenic Intergenic -32232 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 185-42 chr12 14348354 14348497 + 2 NA Intergenic L1MB4|LINE|L1 -17207 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 267-319 chr5 20206636 20206885 + 2 NA intron (NM_001291956, intron 2 of 14) L1MA4|LINE|L1 -98791 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 342-235 chr2 59927134 59927423 + 2 NA Intergenic Intergenic 455758 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 260-356 chr5 124859705 124859899 + 2 NA Intergenic Intergenic -114690 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 396-79 chr11 122061363 122061697 + 2 NA intron (NR_137178, intron 3 of 4) L1MEc|LINE|L1 38314 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 512-224 chr5 113812047 113812468 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 298563 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 418-289 chr8 112400380 112400703 + 2 NA intron (NM_001363185, intron 31 of 66) intron (NM_001363185, intron 31 of 66) -242952 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 545-97 chr18 65645390 65645759 + 2 NA Intergenic Intergenic -104678 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 513-261 chr7 33531789 33532193 + 2 NA intron (NM_198428, intron 20 of 22) intron (NM_198428, intron 20 of 22) -372924 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 416-116 chr14 52176058 52176406 + 2 NA Intergenic Intergenic -91466 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 347-547 chr9 70831031 70831347 + 2 NA intron (NM_001366143, intron 5 of 25) intron (NM_001366143, intron 5 of 25) -21105 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 391-57 chr11 41512504 41512850 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -53025 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 215-209 chr3 163992458 163992623 + 2 NA Intergenic L1P4|LINE|L1 179016 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 215-221 chr4 59617270 59617463 + 2 NA Intergenic Intergenic 603793 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 244-370 chr8 88377911 88378078 + 2 NA Intergenic Intergenic -50511 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 223-350 chr8 113192380 113192572 + 2 NA intron (NM_001363185, intron 3 of 66) HAL1|LINE|L1 184676 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 377-191 chr2 29359968 29360325 + 2 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) 115231 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 402-355 chr8 133300848 133301221 + 2 NA Intergenic Intergenic -3730 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 367-191 chr2 34730354 34730582 + 2 NA Intergenic Intergenic 52911 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 262-423 chr8 62997456 62997634 + 2 NA intron (NR_130764, intron 6 of 6) intron (NR_130764, intron 6 of 6) 19684 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 328-358 chr3 96232655 96232851 + 2 NA Intergenic L1MB1|LINE|L1 -127211 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 225-157 chr2 69503319 69503485 + 2 NA intron (NM_014911, intron 16 of 21) intron (NM_014911, intron 16 of 21) 16769 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 249-45 chr10 41825212 41825449 + 2 NA Intergenic ALR/Alpha|Satellite|centr 542715 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 330-531 chr8 122482733 122483000 + 2 NA intron (NR_131202, intron 2 of 3) MIRc|SINE|MIR 85778 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 125-63 chr7 25134699 25134763 + 2 NA TTS (NM_001371351) TTS (NM_001371351) -9370 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 358-396 chr6 458132 458385 + 2 NA Intergenic L1PA8|LINE|L1 66506 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 377-193 chr2 33778773 33779059 + 2 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -50699 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 212-322 chr8 58278957 58279146 + 2 NA Intergenic L2b|LINE|L2 -6950 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 353-342 chr3 130722002 130722293 + 2 NA intron (NM_014602, intron 7 of 19) intron (NM_014602, intron 7 of 19) 24682 NM_014602 30849 Hs.149032 NM_014602 ENSG00000196455 PIK3R4 VPS15|p150 phosphoinositide-3-kinase regulatory subunit 4 protein-coding 225-361 chr8 101492793 101493001 + 2 NA intron (NM_001330593, intron 1 of 15) (TTTTTC)n|Simple_repeat|Simple_repeat 458 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 309-344 chr3 60426352 60426573 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 191408 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 248-198 chr2 115711766 115711974 + 2 NA intron (NM_001321912, intron 8 of 25) intron (NM_001321912, intron 8 of 25) 368055 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 375-412 chr8 107803575 107803819 + 2 NA Intergenic Intergenic 278242 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 149-83 chr5 108196498 108196590 + 2 NA intron (NM_001163315, intron 5 of 8) L2c|LINE|L2 185554 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 466-14 chr1 154500703 154500978 + 2 NA intron (NR_135169, intron 1 of 5) intron (NR_135169, intron 1 of 5) -1379 NM_182499 126668 Hs.387671 NM_182499 ENSG00000163239 TDRD10 - tudor domain containing 10 protein-coding 594-52 chr16 50953475 50953905 + 2 NA intron (NR_039672, intron 2 of 6) MLT1C|LTR|ERVL-MaLR -64068 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 321-147 chr12 119001135 119001388 + 2 NA intron (NM_194286, intron 1 of 12) MLT1I|LTR|ERVL-MaLR 19720 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 250-150 chr16 73583052 73583228 + 2 NA Intergenic Intergenic 196335 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 299-231 chr2 152811917 152812091 + 2 NA Intergenic L1M2|LINE|L1 93367 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 343-384 chr4 54436679 54436999 + 2 NA Intergenic Intergenic 103947 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 323 chr1 20405047 20405323 + 2 NA intron (NR_033887, intron 3 of 11) intron (NR_033887, intron 3 of 11) 23609 NR_033887 339505 Hs.633269 NR_033887 LINC01141 - long intergenic non-protein coding RNA 1141 ncRNA 201-8 chr1 86335723 86335884 + 2 NA Intergenic Intergenic 21884 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 466-70 chr13 41996834 41997216 + 2 NA Intergenic Intergenic 35856 NR_039974 100507240 Hs.147766 NR_039974 ENSG00000278338 VWA8-AS1 - VWA8 antisense RNA 1 (head to head) ncRNA 379-383 chr9 102970004 102970367 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -25148 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 552-195 chr7 620363 620760 + 2 NA intron (NM_001164760, intron 4 of 10) intron (NM_001164760, intron 4 of 10) 17163 NR_110055 101926963 Hs.521338 NR_110054 LOC101926963 - uncharacterized LOC101926963 ncRNA 618-92 chr4 71579598 71580150 + 2 NA Intergenic L1M5|LINE|L1 204205 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 343-381 chr4 45267650 45267956 + 2 NA Intergenic L1MB3|LINE|L1 -541169 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 492-70 chr12 118806270 118806755 + 2 NA Intergenic L1MA1|LINE|L1 27024 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 349-199 chr16 71177367 71177582 + 2 NA intron (NM_017558, intron 4 of 19) intron (NM_017558, intron 4 of 19) 53248 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 281-86 chr12 39038231 39038384 + 2 NA Intergenic LTR39|LTR|ERV1 -132716 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 358-242 chr2 199152006 199152283 + 2 NA Intergenic Intergenic 305795 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 320-431 chr5 31960843 31961074 + 2 NA intron (NM_178140, intron 2 of 24) L2b|LINE|L2 -24799 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 508-139 chr22 30095076 30095456 + 2 NA intron (NM_001329457, intron 3 of 11) MER57-int|LTR|ERV1 14802 NM_001329457 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 184-100 chr2 166747438 166747575 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -140981 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 371-372 chr8 15192601 15192811 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 45725 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 303-414 chr7 10905299 10905575 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 34716 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 339-246 chr2 31636565 31636766 + 2 NA Intergenic L1MA4|LINE|L1 -55727 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 535-2 chr1 4212936 4213303 + 2 NA Intergenic Intergenic -198932 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 407-204 chr3 104492853 104493132 + 2 NA Intergenic L1ME1|LINE|L1 -873721 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 361-414 chr7 52755739 52755977 + 2 NA Intergenic LTR16|LTR|ERVL -279775 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 361-221 chr2 88269022 88269297 + 2 NA Intergenic AluJr|SINE|Alu 96020 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 336-216 chr17 72245361 72245549 + 2 NA Intergenic Intergenic -97356 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 295-261 chr20 55085460 55085700 + 2 NA Intergenic L2|LINE|L2 -337463 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 444-90 chr16 79068594 79068990 + 2 NA intron (NM_001291997, intron 7 of 7) AluJb|SINE|Alu 531945 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 561-91 chr2 4494853 4495340 + 2 NA Intergenic L1MB3|LINE|L1 161126 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 398-391 chrX 39530341 39530639 + 2 NA Intergenic L2c|LINE|L2 -130726 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 889-4 chr11 23877869 23878579 + 2 NA Intergenic Intergenic -459034 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 489-106 chr17 60397839 60398199 + 2 NA Intergenic Intergenic -5886 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 703-105 chr9 72257004 72257617 + 2 NA Intergenic Intergenic -48126 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 543-34 chr10 52749703 52750109 + 2 NA intron (NR_155748, intron 1 of 2) intron (NR_155748, intron 1 of 2) 5498 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 255-256 chr3 56153881 56154066 + 2 NA intron (NR_132749, intron 4 of 17) intron (NR_132749, intron 4 of 17) -301379 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 425-145 chr2 129809999 129810258 + 2 NA Intergenic L1MEc|LINE|L1 67363 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 395-257 chr4 123350192 123350537 + 2 NA Intergenic Intergenic -46431 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 163-50 chr15 97315402 97315504 + 2 NA Intergenic Intergenic 206358 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 250-421 chr8 68674576 68674737 + 2 NA intron (NR_146187, intron 8 of 13) L1MA3|LINE|L1 -343165 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 545-54 chr12 18707402 18707834 + 2 NA intron (NM_001330769, intron 2 of 10) MLT1D-int|LTR|ERVL-MaLR 29891 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 415-285 chr8 90882392 90882644 + 2 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 90743 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 227-170 chr2 79811954 79812115 + 2 NA intron (NM_001282598, intron 3 of 17) L1M5|LINE|L1 54549 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 630-36 chr16 51298525 51299047 + 2 NA intron (NR_039672, intron 6 of 6) MLT1H|LTR|ERVL-MaLR -147514 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 344-134 chr14 52498168 52498382 + 2 NA intron (NM_001160047, intron 9 of 20) L1M3|LINE|L1 54230 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 258-53 chr10 64778343 64778594 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -47060 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 229-390 chr8 87765881 87766085 + 2 NA Intergenic Intergenic 108032 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 226-115 chr16 56023740 56023941 + 2 NA Intergenic MIR3|SINE|MIR -67809 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 261-160 chr18 55472075 55472205 + 2 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) -7081 NR_039754 100616290 NR_039754 ENSG00000264571 MIR4529 - microRNA 4529 ncRNA 409-100 chr15 95419652 95419913 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -13311 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 663-86 chr5 94232947 94233445 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -121497 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 450-90 chr14 87565377 87565665 + 2 NA Intergenic Intergenic 89773 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 204-46 chr11 94960578 94960748 + 2 NA Intergenic MIR|SINE|MIR 12893 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 797-23 chr2 17576568 17577211 + 2 NA intron (NM_001366806, intron 1 of 3) intron (NM_001366806, intron 1 of 3) 36193 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 724-98 chr8 35950669 35951248 + 2 NA Intergenic Intergenic -240638 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 301-399 chr6 123295408 123295614 + 2 NA intron (NM_006073, intron 24 of 40) L1MA7|LINE|L1 -144093 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 211-172 chr21 19681483 19681626 + 2 NA Intergenic LTR8|LTR|ERV1 218201 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 175-40 chr12 16542522 16542635 + 2 NA Intergenic Intergenic 62801 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 328-306 chr2 236976486 236976753 + 2 NA Intergenic Intergenic 79548 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 297-328 chr4 63395178 63395370 + 2 NA Intergenic L1MB3|LINE|L1 1014176 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 485-214 chr4 161188883 161189316 + 2 NA Intergenic Intergenic -833634 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 428-253 chr6 55635480 55635711 + 2 NA Intergenic Intergenic -56381 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 289-285 chr22 48021909 48022116 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR -252352 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 183-34 chr12 41130165 41130313 + 2 NA Intergenic Intergenic -58081 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 240-144 chr14 88998790 88998972 + 2 NA Intergenic L1ME3B|LINE|L1 174230 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 334-547 chr8 116275623 116275865 + 2 NA intron (NR_046215, intron 1 of 13) L1PA16|LINE|L1 49315 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 326-172 chr15 68034212 68034524 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -19811 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 337-203 chr17 62886729 62886916 + 2 NA Intergenic Intergenic -57393 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 252-44 chr10 57391926 57392072 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -87440 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 346-362 chr4 125613357 125613560 + 2 NA Intergenic L1M8|LINE|L1 106199 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 372-180 chr16 85983111 85983465 + 2 NA Intergenic Intergenic 64941 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 440-79 chr15 70507723 70508136 + 2 NA Intergenic Intergenic -2001 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 644-25 chr16 31645612 31646096 + 2 NA Intergenic Intergenic -54759 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 328-65 chr10 111274735 111275032 + 2 NA Intergenic MIRb|SINE|MIR 160592 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 406-219 chr4 182988987 182989349 + 2 NA Intergenic L1MEd|LINE|L1 -48497 NR_003612 403315 Hs.652187 NR_003612 ENSG00000230219 FAM92A1P2 FAM92A3 family with sequence similarity 92, member A3 pseudo 372-88 chr11 112686901 112687257 + 2 NA Intergenic Intergenic -131277 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 325-182 chr15 69744853 69745031 + 2 NA Intergenic Intergenic -90292 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 238-381 chr8 79281412 79281581 + 2 NA Intergenic Intergenic -50692 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 196-205 chr5 42608423 42608600 + 2 NA intron (NM_001242460, intron 1 of 7) intron (NM_001242460, intron 1 of 7) 42647 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 308-305 chr3 110557327 110557628 + 2 NA Intergenic L1MA3|LINE|L1 512482 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 194-210 chr8 107068095 107068278 + 2 NA Intergenic Intergenic 268329 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 228-23 chr1 178209967 178210118 + 2 NA intron (NM_170692, intron 1 of 17) L1MEd|LINE|L1 115938 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 209-326 chr8 100439194 100439360 + 2 NA Intergenic Intergenic 56514 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 469-219 chr5 54618404 54618822 + 2 NA Intergenic Intergenic 84711 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 336-198 chr16 59094434 59094619 + 2 NA Intergenic Intergenic -360210 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 450-78 chr14 34107031 34107341 + 2 NA Intergenic Intergenic -156112 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 371-241 chr3 80330062 80330373 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -434680 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 248-119 chr14 78536516 78536663 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 132870 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 266-45 chr10 76139063 76139298 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 356419 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 414-326 chr8 71535070 71535376 + 2 NA intron (NM_001370335, intron 2 of 20) intron (NM_001370335, intron 2 of 20) 12481 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 497-135 chr2 123892190 123892531 + 2 NA Intergenic L1MA2|LINE|L1 132814 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 474-268 chr7 61903595 61903937 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1400290 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 273-163 chr16 71513242 71513481 + 2 NA promoter-TSS (NR_135171) promoter-TSS (NR_135171) -450 NR_135171 105371335 Hs.564879 NR_135171 ENSG00000260520 LOC105371335 - uncharacterized LOC105371335 ncRNA 499-143 chr20 12048982 12049279 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 131237 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 358-64 chr11 39050225 39050435 + 2 NA Intergenic Intergenic 401472 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 262-396 chr7 46473824 46474051 + 2 NA Intergenic L1PA10|LINE|L1 223185 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 349-408 chr5 27938676 27938982 + 2 NA Intergenic Intergenic 348836 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 263-158 chr17 71849990 71850188 + 2 NA Intergenic Intergenic 175890 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 352-265 chr2 191482034 191482235 + 2 NA Intergenic L1M4b|LINE|L1 -195938 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 254-310 chr5 58917022 58917193 + 2 NA Intergenic Intergenic 82791 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 278-118 chr14 65401209 65401458 + 2 NA Intergenic Intergenic -9259 NR_038167 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 279-157 chr19 44156289 44156534 + 2 NA exon (NM_001144824, exon 6 of 6) exon (NM_001144824, exon 6 of 6) -8651 NM_001146220 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 356-51 chr10 58530779 58530998 + 2 NA intron (NM_001080512, intron 1 of 20) L1M4c|LINE|L1 18016 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 601-27 chr12 3035700 3036144 + 2 NA intron (NM_201443, intron 8 of 10) MIR3|SINE|MIR -41433 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 252-2 chr1 14337977 14338169 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 81900 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 267-46 chr10 54546281 54546504 + 2 NA intron (NM_001142771, intron 2 of 34) intron (NM_001142771, intron 2 of 34) 60162 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 559-182 chr8 72367812 72368337 + 2 NA Intergenic L1PB1|LINE|L1 -116440 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 299-369 chr5 61036668 61036853 + 2 NA intron (NM_174889, intron 1 of 3) LTR33|LTR|ERVL 91555 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 364-207 chr2 72073944 72074300 + 2 NA Intergenic Intergenic 73740 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 400-208 chr3 17908138 17908497 + 2 NA Intergenic Intergenic -54235 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 493-204 chr3 84599785 84600127 + 2 NA Intergenic MIR3|SINE|MIR 269619 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 305-369 chr3 197914467 197914657 + 2 NA intron (NM_001323030, intron 7 of 7) intron (NM_001323030, intron 7 of 7) 35363 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 267-394 chr7 52676211 52676415 + 2 NA Intergenic Intergenic -359320 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 236-120 chr14 85032938 85033120 + 2 NA Intergenic Intergenic -238903 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 197-120 chr21 17753497 17753624 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 38949 NR_038870 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 544-172 chr5 18983308 18983632 + 2 NA Intergenic Intergenic 902802 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 196-146 chr2 213984453 213984592 + 2 NA intron (NR_047660, intron 11 of 14) L2b|LINE|L2 226455 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 321-303 chr2 159500936 159501117 + 2 NA intron (NM_001329858, intron 2 of 36) AluJb|SINE|Alu -114268 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 355-321 chr3 63166140 63166395 + 2 NA Intergenic Intergenic 63579 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 300-146 chr16 75168511 75168674 + 2 NA intron (NM_001318475, intron 3 of 3) intron (NM_001318475, intron 3 of 3) 19541 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 337-375 chr3 181410035 181410365 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 32286 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 444-10 chr1 96658383 96658655 + 2 NA Intergenic Intergenic -63086 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 164-3 chr1 74141312 74141459 + 2 NA intron (NM_001105659, intron 4 of 7) intron (NM_001105659, intron 4 of 7) 56791 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 608-9 chr10 41818452 41818910 + 2 NA Intergenic ALR/Alpha|Satellite|centr 549364 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 201-252 chr9 1318309 1318475 + 2 NA Intergenic Intergenic 266905 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 400-300 chr5 179037077 179037421 + 2 NA Intergenic AluSc8|SINE|Alu 13445 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 347-297 chr3 35858597 35858938 + 2 NA Intergenic Intergenic 114291 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 304-478 chr7 8253491 8253692 + 2 NA intron (NM_001350826, intron 1 of 14) MER8|DNA|TcMar-Tigger 8461 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 453-30 chr10 92449593 92449969 + 2 NA Intergenic L1MC4|LINE|L1 31120 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 480-113 chr17 61766059 61766471 + 2 NA intron (NM_032043, intron 14 of 19) L2b|LINE|L2 97294 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 562-146 chr3 125242870 125243348 + 2 NA intron (NM_001348434, intron 6 of 7) intron (NM_001348434, intron 6 of 7) -30344 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 672-55 chr2 81354151 81354746 + 2 NA Intergenic Intergenic 112498 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 676-104 chr7 25509609 25510064 + 2 NA Intergenic L1MA3|LINE|L1 153304 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 383-68 chr11 113461012 113461272 + 2 NA intron (NM_016574, intron 1 of 6) intron (NM_016574, intron 1 of 6) -11054 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 550-41 chr10 116577264 116577616 + 2 NA Intergenic Intergenic -13519 NM_006229 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 378-447 chr8 139889402 139889648 + 2 NA intron (NM_001160372, intron 20 of 22) L1MB3|LINE|L1 -186402 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 256-141 chr15 81814774 81814952 + 2 NA Intergenic L2a|LINE|L2 231155 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 201-262 chr9 117579754 117579857 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -68801 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 521-246 chr7 116103603 116104040 + 2 NA Intergenic Intergenic -73058 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 292-443 chr8 120049321 120049493 + 2 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -75695 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 525-196 chr5 35558929 35559289 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -58754 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 170-142 chr8 130201261 130201426 + 2 NA intron (NM_001362925, intron 5 of 29) intron (NM_001362925, intron 5 of 29) 95190 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 191-203 chr7 94418363 94418488 + 2 NA intron (NM_000089, intron 32 of 51) intron (NM_000089, intron 32 of 51) 23864 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 249-308 chr4 138787679 138787912 + 2 NA Intergenic L2a|LINE|L2 224851 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 638-65 chr2 34030529 34030951 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -36486 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 344-149 chr15 35612121 35612339 + 2 NA intron (NR_038251, intron 1 of 2) L1MEc|LINE|L1 66035 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 252-232 chr20 55183914 55184062 + 2 NA Intergenic Intergenic -239055 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 258-318 chr5 44690107 44690327 + 2 NA Intergenic Intergenic 118576 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 681-83 chr8 46287924 46288480 + 2 NA Intergenic ALR/Alpha|Satellite|centr 329441 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 440-82 chr16 31831330 31831698 + 2 NA Intergenic L1PB4|LINE|L1 -22661 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 348-316 chr3 108001129 108001329 + 2 NA Intergenic LTR33B|LTR|ERVL 89859 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 385-152 chr18 78888332 78888570 + 2 NA Intergenic L1PA16|LINE|L1 -91824 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 687-12 chr10 32428590 32428937 + 2 NA Intergenic Intergenic 17293 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 332-467 chr7 1784051 1784307 + 2 NA Intergenic L1ME3E|LINE|L1 -41869 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 376-61 chr10 120356660 120356891 + 2 NA Intergenic MLT2C1|LTR|ERVL -1552 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 1088-4 chr14_GL000225v1_random 120075 120754 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 315-63 chr10 67930821 67931057 + 2 NA intron (NM_001278185, intron 22 of 23) AluSz6|SINE|Alu 39537 NM_001314049 23411 Hs.369779 NM_012238 ENSG00000096717 SIRT1 SIR2|SIR2L1|SIR2alpha sirtuin 1 protein-coding 324-332 chr22 34130503 34130679 + 2 NA Intergenic Intergenic -207703 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 383-297 chr4 159647700 159648024 + 2 NA Intergenic L1MA6|LINE|L1 129922 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 238-202 chr20 19335273 19335491 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -50786 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 229-200 chr2 146005890 146006083 + 2 NA Intergenic Intergenic -581071 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 282-163 chr17 54074673 54074912 + 2 NA Intergenic Intergenic 251865 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 282-345 chr4 78388637 78388802 + 2 NA intron (NM_001166133, intron 29 of 41) AluJb|SINE|Alu 99734 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 221-11 chr1 97901420 97901601 + 2 NA intron (NM_000110, intron 1 of 22) intron (NM_000110, intron 1 of 22) 19549 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 463-15 chr1 92054823 92055214 + 2 NA intron (NM_173567, intron 6 of 6) L1ME4a|LINE|L1 20454 NM_001287737 646817 NM_001287737 ENSG00000230667 SETSIP SETP18 SET like protein protein-coding 316-424 chr5 14784453 14784692 + 2 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 41440 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 230 chr1 4966060 4966219 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie 311530 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 159-86 chr7 26644611 26644743 + 2 NA intron (NR_161202, intron 3 of 3) intron (NR_161202, intron 3 of 3) 6806 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 114-57 chr6 152023011 152023109 + 2 NA intron (NM_001122741, intron 6 of 8) L2|LINE|L2 145227 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 366-169 chr17 69143824 69144159 + 2 NA Intergenic Intergenic -2096 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 524-221 chr6 46712161 46712617 + 2 NA intron (NM_005084, intron 5 of 11) intron (NM_005084, intron 5 of 11) 22986 NM_005084 7941 Hs.584823 NM_005084 ENSG00000146070 PLA2G7 LDL-PLA2|LP-PLA2|PAFAD|PAFAH phospholipase A2 group VII protein-coding 348-382 chr4 171667287 171667503 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -28632 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 151-85 chr8 79547849 79547973 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie -63206 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 323-477 chr6 160917415 160917625 + 2 NA Intergenic Intergenic -74207 NM_006724 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 280-162 chr17 53962262 53962538 + 2 NA Intergenic Intergenic 139473 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 547-166 chr4 104977862 104978269 + 2 NA Intergenic L2c|LINE|L2 -167810 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 274-320 chr5 126037131 126037342 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -142341 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 363-141 chr14 66130854 66131066 + 2 NA Intergenic Intergenic -355411 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 156-38 chr15 97161183 97161317 + 2 NA Intergenic Intergenic 360561 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 268-328 chr5 176372395 176372659 + 2 NA 3' UTR (NM_173664, exon 4 of 4) 3' UTR (NM_173664, exon 4 of 4) 4581 NR_031569 100302203 NR_031569 ENSG00000221464 MIR1271 MIRN1271|hsa-mir-1271 microRNA 1271 ncRNA 251-386 chr8 61395791 61395959 + 2 NA intron (NM_173519, intron 3 of 5) intron (NM_173519, intron 3 of 5) 107905 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 352-207 chr19 30180014 30180292 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -192231 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 320-243 chr19 51945475 51945676 + 2 NA exon (NM_024840, exon 6 of 6) exon (NM_024840, exon 6 of 6) -3559 NR_103847 101669766 Hs.637744 NR_103847 ENSG00000269235 ZNF350-AS1 HCCAT3|uc002pyc ZNF350 antisense RNA 1 ncRNA 368-411 chr6 164127939 164128246 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -456608 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 393-290 chr5 145536533 145536860 + 2 NA Intergenic Intergenic 298646 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 205-296 chr9 95056560 95056752 + 2 NA intron (NM_032823, intron 11 of 14) intron (NM_032823, intron 11 of 14) -8694 NR_106729 102466518 NR_106729 ENSG00000274115 MIR6081 hsa-mir-6081 microRNA 6081 ncRNA 269-389 chr7 92978646 92978878 + 2 NA Intergenic L1M4|LINE|L1 139217 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 449-241 chr6 119551502 119551886 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 1886 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 498-278 chr8 111380576 111380875 + 2 NA intron (NR_146282, intron 1 of 3) intron (NR_146282, intron 1 of 3) 4086 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 287-70 chr10 93980757 93980972 + 2 NA Intergenic L1MC1|LINE|L1 -13067 NM_001288989 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 210-177 chr3 85137712 85137876 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -75530 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 191-50 chr14 28027774 28027910 + 2 NA Intergenic Intergenic -354621 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 488-8 chr1 71527875 71528264 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 308943 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 321-58 chr10 51005250 51005541 + 2 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 14507 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 269-22 chr1 164869595 164869750 + 2 NA intron (NM_001353131, intron 7 of 7) L2a|LINE|L2 -95031 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 523-197 chr4 41302959 41303304 + 2 NA Intergenic Intergenic 46203 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 317-449 chr7 37856705 37856877 + 2 NA intron (NM_016616, intron 5 of 17) intron (NM_016616, intron 5 of 17) 8194 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 399-171 chr2 193230480 193230872 + 2 NA Intergenic Intergenic 480831 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 661-84 chr6 12774713 12775225 + 2 NA intron (NM_001322308, intron 3 of 13) intron (NM_001322308, intron 3 of 13) 56270 NM_001322310 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 249-459 chrUn_KI270310v1 782 1002 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 469 chr1 7516585 7517023 + 2 NA intron (NM_001349608, intron 5 of 21) intron (NM_001349608, intron 5 of 21) -127050 NR_146199 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 588-57 chr18 4656244 4656661 + 2 NA Intergenic Intergenic -201145 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 254-164 chr18 35285822 35286055 + 2 NA intron (NM_001166012, intron 1 of 4) L1ME2|LINE|L1 4291 NM_001166012 100101467 Hs.619840 NM_001112734 ENSG00000186814 ZSCAN30 ZNF-WYM|ZNF397OS|ZNF917 zinc finger and SCAN domain containing 30 protein-coding 540-118 chr2 121125489 121125840 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 159538 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 512-270 chr8 86082968 86083241 + 2 NA Intergenic MER21C|LTR|ERVL -13436 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 442-268 chr7 2991079 2991418 + 2 NA intron (NM_001324281, intron 1 of 25) L1ME2|LINE|L1 52619 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 301-281 chr3 85006729 85006899 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 47825 NM_001167675 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 472-153 chr2 79265866 79266215 + 2 NA Intergenic Intergenic -106287 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 979-14 chr4 92316333 92316888 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 12211 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 598-161 chrX 98089774 98090324 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -525514 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 235-346 chr8 11706345 11706523 + 2 NA TTS (NR_132779) TTS (NR_132779) 1072 NR_132779 106635531 NR_132779 SNORA99 - small nucleolar RNA, H/ACA box 99 snoRNA 443-132 chr18 45039128 45039545 + 2 NA intron (NM_015559, intron 5 of 5) intron (NM_015559, intron 5 of 5) -69170 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 142-19 chr14 26442540 26442652 + 2 NA TTS (NM_001366394) TTS (NM_001366394) 110834 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 349-166 chr14 72818349 72818638 + 2 NA intron (NM_001280542, intron 1 of 10) AluJr4|SINE|Alu 74156 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 328-237 chr19 44486569 44486752 + 2 NA intron (NM_001288760, intron 3 of 6) AluJb|SINE|Alu 13862 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 291-21 chr1 150130794 150130978 + 2 NA intron (NR_103998, intron 13 of 13) MIR|SINE|MIR -18548 NM_001304724 51177 Hs.438824 NM_016274 ENSG00000023902 PLEKHO1 CKIP-1|CKIP1|JBP|OC120 pleckstrin homology domain containing O1 protein-coding 347-350 chr4 78710595 78710790 + 2 NA Intergenic L1ME3|LINE|L1 64698 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 306-498 chr8 53676902 53677114 + 2 NA Intergenic L1MB5|LINE|L1 -153043 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 221-321 chr9 84621899 84622106 + 2 NA Intergenic Intergenic -46456 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 375-354 chr6 72741940 72742169 + 2 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 111559 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 330-521 chr8 87633859 87634173 + 2 NA Intergenic MIRb|SINE|MIR 239999 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 393-318 chr6 167959897 167960137 + 2 NA intron (NM_001040000, intron 29 of 29) intron (NM_001040000, intron 29 of 29) 16922 NM_001129895 100128124 Hs.448059 NM_001129895 HGC6.3 - uncharacterized LOC100128124 protein-coding 297-451 chr7 146843892 146844107 + 2 NA intron (NM_014141, intron 2 of 22) intron (NM_014141, intron 2 of 22) 69728 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 546-143 chr3 40018715 40019123 + 2 NA intron (NM_001284424, intron 2 of 15) intron (NM_001284424, intron 2 of 15) -81092 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 247-58 chr11 63500502 63500659 + 2 NA Intergenic LTR8A|LTR|ERV1 -5504 NM_001142536 85329 Hs.502774 NM_033101 ENSG00000133317 LGALS12 GAL12|GRIP1 galectin 12 protein-coding 262-153 chr16 19125072 19125322 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 11233 NR_028028 162073 Hs.530899 NM_001034841 ENSG00000205730 ITPRIPL2 - ITPRIP like 2 protein-coding 320-529 chr8 16257087 16257346 + 2 NA Intergenic Intergenic -64425 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 254-335 chr5 168771559 168771765 + 2 NA intron (NM_003062, intron 14 of 35) intron (NM_003062, intron 14 of 35) -3407 NR_029632 407001 NR_029632 ENSG00000207739 MIR218-2 MIRN218-2|mir-218-2 microRNA 218-2 ncRNA 166-116 chr8 83256838 83256995 + 2 NA Intergenic Intergenic -146842 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 124-74 chrX 122268075 122268190 + 2 NA Intergenic L1M4c|LINE|L1 897160 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 296-351 chr4 172806557 172806793 + 2 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) -79797 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 309-488 chr6 130749677 130749892 + 2 NA Intergenic LTR27E|LTR|ERV1 -77621 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 339-394 chr4 8828096 8828389 + 2 NA Intergenic L1MC1|LINE|L1 43597 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 410-237 chr5 45288847 45289086 + 2 NA intron (NM_021072, intron 6 of 7) intron (NM_021072, intron 6 of 7) 407414 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 518-322 chrX 74929353 74929789 + 2 NA Intergenic Intergenic -4119 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 352-209 chr19 40007356 40007681 + 2 NA intron (NM_178544, intron 5 of 6) intron (NM_178544, intron 5 of 6) 10458 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 375-127 chr14 68351678 68352045 + 2 NA intron (NM_133509, intron 8 of 10) L2b|LINE|L2 276926 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 325-101 chr11 38526931 38527133 + 2 NA Intergenic L1PBb|LINE|L1 119324 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 345-107 chr12 13409377 13409576 + 2 NA Intergenic Intergenic -32731 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 263-204 chr2 80489797 80489980 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 176509 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 185-75 chr17 51534422 51534598 + 2 NA Intergenic L1ME4a|LINE|L1 99083 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 208-288 chrX 55994870 55995031 + 2 NA intron (NM_001324105, intron 1 of 5) L1PA15|LINE|L1 86665 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 367-162 chr17 33855035 33855303 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 301637 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 320-445 chr5 68618535 68618747 + 2 NA Intergenic Intergenic 326064 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 380-162 chr18 41763250 41763529 + 2 NA Intergenic Intergenic -191845 NM_001308020 5289 Hs.464971 NM_002647 ENSG00000078142 PIK3C3 VPS34|Vps34|hVps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 241-155 chr18 32236284 32236480 + 2 NA Intergenic Intergenic 46343 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 308-519 chr8 130806915 130807103 + 2 NA intron (NM_001115, intron 14 of 17) intron (NM_001115, intron 14 of 17) 233900 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 281-325 chr4 93422431 93422635 + 2 NA intron (NM_001286838, intron 8 of 14) intron (NM_001286838, intron 8 of 14) -406220 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 238-237 chr3 63300898 63301073 + 2 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 22677 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 434-231 chr5 117712525 117712828 + 2 NA Intergenic L1MC2|LINE|L1 -17685 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 290-32 chr1 221105188 221105447 + 2 NA Intergenic Intergenic -225177 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 338-356 chr3 167499820 167500043 + 2 NA intron (NM_001348951, intron 18 of 18) intron (NM_001348951, intron 18 of 18) -25799 NM_001012303 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 495-52 chr12 116252553 116252919 + 2 NA intron (NM_015335, intron 1 of 30) L1ME1|LINE|L1 24450 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 347-196 chr2 8653096 8653301 + 2 NA Intergenic Intergenic 28663 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 198-152 chr22 49518102 49518286 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 25272 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 229-120 chr14 87982447 87982653 + 2 NA intron (NM_000153, intron 5 of 16) L2b|LINE|L2 10632 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 158-92 chr5 45805229 45805316 + 2 NA Intergenic L1MA6|LINE|L1 -108892 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 553-40 chr12 14353266 14353695 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -12152 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 365-419 chr8 139980849 139981168 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 119527 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 344-124 chr13 83182408 83182611 + 2 NA Intergenic Intergenic 699884 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 195-168 chr4 84351739 84351897 + 2 NA Intergenic Intergenic -52649 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 352-460 chr6 73902892 73903095 + 2 NA Intergenic LTR12C|LTR|ERV1 -166458 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 323-269 chr2 123995876 123996190 + 2 NA Intergenic L1MA4|LINE|L1 29141 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 427-173 chr4 30429992 30430365 + 2 NA Intergenic Intergenic -290191 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 560-194 chr9 36822805 36823166 + 2 NA TTS (NR_039686) TTS (NR_039686) 614 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 425-305 chr8 99430296 99430660 + 2 NA intron (NM_017890, intron 21 of 61) intron (NM_017890, intron 21 of 61) 106252 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 330-505 chr8 25024652 25024850 + 2 NA Intergenic Intergenic -67882 NM_006158 4747 Hs.521461 NM_006158 ENSG00000277586 NEFL CMT1F|CMT2E|CMTDIG|NF-L|NF68|NFL|PPP1R110 neurofilament light protein-coding 346-424 chr6 64294695 64294938 + 2 NA intron (NM_001292009, intron 30 of 43) Charlie1a|DNA|hAT-Charlie 487980 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 370-448 chr8 121084159 121084409 + 2 NA Intergenic Intergenic -272238 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 184-89 chr2 66939217 66939365 + 2 NA intron (NR_110169, intron 3 of 4) MIRb|SINE|MIR -16801 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 486-50 chr11 79755092 79755407 + 2 NA Intergenic L2a|LINE|L2 -314219 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 293-288 chr4 11378594 11378809 + 2 NA Intergenic Intergenic 9874 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 321-577 chr8 126391872 126392146 + 2 NA Intergenic Intergenic 66514 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 641-96 chr5 164994455 164995023 + 2 NA Intergenic L2a|LINE|L2 524460 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 266-12 chr1 88431826 88432044 + 2 NA Intergenic HAL1M8|LINE|L1 -252209 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 355-200 chr17 71896463 71896641 + 2 NA Intergenic L2c|LINE|L2 129427 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 385-304 chr5 89517047 89517368 + 2 NA Intergenic L1MC5|LINE|L1 499513 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 435-80 chr14 64783714 64784082 + 2 NA intron (NM_001024858, intron 18 of 34) intron (NM_001024858, intron 18 of 34) 1788 NR_107009 102465841 NR_107009 ENSG00000284269 MIR7855 hsa-mir-7855 microRNA 7855 ncRNA 266-80 chr12 13791919 13792080 + 2 NA intron (NM_000834, intron 2 of 12) L1MA4|LINE|L1 188357 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 238-435 chrY 11329202 11329402 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 1092288 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 228-324 chr7 110620413 110620587 + 2 NA Intergenic LTR33A|LTR|ERVL -470506 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 396-381 chrX 64665801 64666051 + 2 NA Intergenic L1PA15|LINE|L1 -270474 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 534-121 chr2 100743804 100744222 + 2 NA Intergenic Intergenic -76126 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 288-395 chr7 10802195 10802384 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -22345 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 496-45 chr11 20719317 20719768 + 2 NA intron (NM_201551, intron 2 of 18) MLT1I-int|LTR|ERVL-MaLR 49956 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 259-54 chr10 77990426 77990564 + 2 NA intron (NM_007055, intron 21 of 30) intron (NM_007055, intron 21 of 30) 39020 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 661-28 chr15 96905720 96906228 + 2 NA Intergenic Intergenic 122539 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 342-458 chr6 72734505 72734707 + 2 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 104111 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 276-398 chr6 51412994 51413238 + 2 NA Intergenic Intergenic -208754 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 405-105 chr16 78977455 78977682 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 623169 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 261-3 chr1 14119497 14119693 + 2 NA Intergenic Intergenic 300378 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 328-370 chr3 144184185 144184412 + 2 NA Intergenic L1ME3Cz|LINE|L1 211217 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 310-35 chr1 238576014 238576305 + 2 NA Intergenic L1MDa|LINE|L1 -90142 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 337-286 chr2 178567063 178567308 + 2 NA exon (NM_133432, exon 155 of 192) exon (NM_133432, exon 155 of 192) 43994 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 279-117 chr15 79914074 79914313 + 2 NA intron (NR_037653, intron 1 of 2) L3|LINE|CR1 -8578 NR_028330 283687 Hs.722219 NM_175898 ST20-AS1 C15orf37 ST20 antisense RNA 1 ncRNA 241-97 chr13 61555882 61556073 + 2 NA Intergenic Intergenic -128031 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 425-219 chr5 8437276 8437609 + 2 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 20122 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 541-204 chr6 119383447 119383871 + 2 NA Intergenic L1MA3|LINE|L1 -33898 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 361-460 chr8 125959695 125959898 + 2 NA Intergenic L1PB1|LINE|L1 -8599 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 410-236 chr5 42672539 42672914 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) -84092 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 124-49 chr3 153833555 153833655 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -71079 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 412-144 chr19 51075506 51075737 + 2 NA Intergenic Intergenic 7235 NR_163144 43847 Hs.283925 NM_022046 ENSG00000129437 KLK14 KLK-L6 kallikrein related peptidase 14 protein-coding 456-40 chr10 108108646 108109095 + 2 NA Intergenic MER67C|LTR|ERV1 -39577 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 290-64 chr10 133114246 133114497 + 2 NA intron (NM_001083909, intron 5 of 6) intron (NM_001083909, intron 5 of 6) 12125 NM_001291085 84435 Hs.435183 NM_032422 ENSG00000197177 ADGRA1 GPR123 adhesion G protein-coupled receptor A1 protein-coding 269-179 chr2 22320452 22320684 + 2 NA Intergenic L1ME1|LINE|L1 -215911 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 238-313 chr5 180654370 180654578 + 2 NA Intergenic LOR1b|LTR|ERV1 -4874 NM_002020 2324 Hs.646917 NM_002020 ENSG00000037280 FLT4 FLT-4|FLT41|LMPH1A|LMPHM1|PCL|VEGFR-3|VEGFR3 fms related tyrosine kinase 4 protein-coding 354-71 chr11 2628192 2628468 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 71668 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 803-45 chr5 42371135 42371887 + 2 NA Intergenic Intergenic -51928 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 343-39 chr1 241053267 241053575 + 2 NA intron (NM_001350116, intron 3 of 16) intron (NM_001350116, intron 3 of 16) -78851 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 235-384 chr9 29218533 29218699 + 2 NA Intergenic LTR80A|LTR|ERVL -5015 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 342-98 chr11 111011591 111011843 + 2 NA Intergenic Intergenic 85601 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 218-304 chr7 62984397 62984591 + 2 NA Intergenic ALR/Alpha|Satellite|centr 319562 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 372-227 chr2 56523680 56523891 + 2 NA Intergenic L1ME4c|LINE|L1 -338015 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 674-44 chr2 80515441 80515969 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 202326 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 587-78 chr2 137441542 137441949 + 2 NA intron (NM_001316349, intron 14 of 27) intron (NM_001316349, intron 14 of 27) 486187 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 221-325 chrX 66486926 66487126 + 2 NA Intergenic HERVL-int|LTR|ERVL 129004 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 274-35 chr10 24748386 24748532 + 2 NA Intergenic Intergenic -24572 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 528-224 chr6 63289798 63290150 + 2 NA intron (NM_001143940, intron 2 of 4) intron (NM_001143940, intron 2 of 4) 30003 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 435-87 chr15 62209602 62209884 + 2 NA Intergenic MER9B|LTR|ERVK -6425 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 367-87 chr12 30194463 30194670 + 2 NA Intergenic Intergenic -409807 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 309-503 chr7 8083668 8083863 + 2 NA intron (NM_138426, intron 6 of 7) Tigger19b|DNA|TcMar-Tigger 114969 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 230-248 chr3 173356337 173356490 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -39539 NM_001365930 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 500-231 chr5 86134349 86134755 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie -147892 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 181-130 chr5 129044597 129044771 + 2 NA Intergenic L1M4c|LINE|L1 -50065 NM_016048 51015 Hs.483296 NM_016048 ENSG00000066583 ISOC1 CGI-111 isochorismatase domain containing 1 protein-coding 374-421 chr9 122280813 122281093 + 2 NA intron (NR_144421, intron 3 of 8) intron (NR_144421, intron 3 of 8) 16071 NM_138777 92399 Hs.368011 NM_138777 ENSG00000148187 MRRF MRFF|MTRRF|RRF mitochondrial ribosome recycling factor protein-coding 334-85 chr11 40080751 40080935 + 2 NA Intergenic LTR9B|LTR|ERV1 212287 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 254-116 chr14 62807093 62807279 + 2 NA intron (NM_139318, intron 8 of 10) PABL_A-int|LTR|ERV1 238272 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 410-291 chr7 125156212 125156475 + 2 NA Intergenic Intergenic -28226 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 416-246 chr4 43441624 43441870 + 2 NA Intergenic Intergenic 50796 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 290-249 chr20 54865537 54865797 + 2 NA Intergenic Intergenic 390074 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 331-338 chr3 5979776 5979963 + 2 NA Intergenic Intergenic -729614 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 377-189 chr2 24528759 24529051 + 2 NA intron (NM_001362952, intron 1 of 23) AluY|SINE|Alu 37028 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 272-24 chr1 193778000 193778244 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 473377 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 235-241 chr3 178793189 178793347 + 2 NA intron (NR_126560, intron 2 of 7) intron (NR_126560, intron 2 of 7) 67137 NR_126560 104797538 Hs.478363 NR_126560 KCNMB2-AS1 - KCNMB2 antisense RNA 1 ncRNA 239-154 chr19 14732240 14732410 + 2 NA TTS (NM_001271052) TTS (NM_001271052) 42277 NM_001352244 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 310-234 chr2 53363856 53364045 + 2 NA Intergenic L1M5|LINE|L1 -403833 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 309-373 chr3 190295292 190295482 + 2 NA Intergenic Intergenic 27059 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 166-51 chr2 67617503 67617629 + 2 NA Intergenic Intergenic 207996 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 472-140 chr19 29399852 29400316 + 2 NA intron (NR_040029, intron 3 of 9) MER4CL34|LTR|ERV1 125668 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 365-175 chr19 57980379 57980668 + 2 NA intron (NM_001348025, intron 6 of 6) intron (NM_001348025, intron 6 of 6) -5989 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 461-298 chrX 96397429 96397813 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -59719 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 523-10 chr1 165980589 165980954 + 2 NA Intergenic L1PB1|LINE|L1 72850 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 159-13 chr10 58238231 58238384 + 2 NA intron (NM_152230, intron 1 of 5) MER91A|DNA|hAT-Tip100 29587 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 282-30 chr1 237171308 237171490 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 129215 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 508-150 chr3 109448986 109449375 + 2 NA intron (NR_109841, intron 2 of 4) L1M1|LINE|L1 39190 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 284-8 chr1 76470189 76470417 + 2 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 308964 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 374-204 chr2 141643259 141643529 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 488307 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 633-63 chr2 59121402 59121922 + 2 NA Intergenic (TACAG)n|Simple_repeat|Simple_repeat -96046 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 465-271 chr7 40378747 40379107 + 2 NA intron (NM_024728, intron 9 of 14) MLT1D|LTR|ERVL-MaLR 243951 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 251-27 chr10 19095060 19095203 + 2 NA intron (NM_001142308, intron 4 of 39) intron (NM_001142308, intron 4 of 39) 46330 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 323-593 chrX 41209720 41209939 + 2 NA intron (NM_001039591, intron 32 of 44) intron (NM_001039591, intron 32 of 44) -65910 NR_135616 105373185 Hs.546119 NR_135616 ENSG00000223714 LINC02601 - long intergenic non-protein coding RNA 2601 ncRNA 322-512 chr8 27555474 27555722 + 2 NA Intergenic L1MB3|LINE|L1 55153 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 195-66 chr14 72369498 72369684 + 2 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -147229 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 192-3 chr1 29300805 29300977 + 2 NA intron (NM_133177, intron 15 of 30) intron (NM_133177, intron 15 of 30) 49223 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 961-21 chr7 115778074 115778720 + 2 NA Intergenic Intergenic 189916 NM_001244583 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 350-242 chr2 137714389 137714645 + 2 NA Intergenic L1PA16|LINE|L1 213415 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 771-25 chr14 71840507 71841060 + 2 NA Intergenic L1M1|LINE|L1 -91388 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 413-71 chr12 99928982 99929381 + 2 NA intron (NM_152788, intron 1 of 25) LTR89|LTR|ERVL? 55473 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 288-27 chr1 181288769 181289033 + 2 NA Intergenic Intergenic 52513 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 279-446 chr9 104004351 104004588 + 2 NA Intergenic MIRb|SINE|MIR 4760 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 301-81 chr11 125812865 125813097 + 2 NA Intergenic L1MA2|LINE|L1 -20335 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 739-64 chr7 21295725 21296111 + 2 NA Intergenic Intergenic -132165 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 373-296 chr4 129248293 129248621 + 2 NA Intergenic Intergenic 152305 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 225-214 chr3 96850762 96850960 + 2 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 36267 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 324-97 chr11 84611365 84611657 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 109431 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 373-389 chr7 78676240 78676521 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) 329138 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 505-173 chr20 14325814 14326260 + 2 NA exon (NM_013281, exon 2 of 2) exon (NM_013281, exon 2 of 2) 11575 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 323-553 chr8 88906952 88907170 + 2 NA Intergenic L1MA6|LINE|L1 -579578 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 443-142 chr2 16103469 16103814 + 2 NA Intergenic FLAM_C|SINE|Alu 53214 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 604-19 chr10 83562185 83562558 + 2 NA Intergenic Intergenic 114718 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 362-217 chr2 83445839 83446148 + 2 NA Intergenic Intergenic -76821 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 598-133 chr7 80001979 80002412 + 2 NA Intergenic Intergenic -132636 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 576-14 chr10 16226926 16227429 + 2 NA Intergenic L1MA7|LINE|L1 -209766 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 354-95 chr11 132974772 132974968 + 2 NA intron (NM_001012393, intron 1 of 7) L2|LINE|L2 -31102 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 495-37 chr11 115960284 115960740 + 2 NA Intergenic Intergenic -200312 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 132-6 chr1 207993530 207993628 + 2 NA Intergenic Tigger16a|DNA|TcMar-Tigger -82454 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 447-143 chr2 182857649 182857956 + 2 NA intron (NM_001463, intron 2 of 5) L1ME1|LINE|L1 8835 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 331-118 chr12 44395088 44395336 + 2 NA Intergenic Intergenic 480449 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 243-447 chr8 84111479 84111678 + 2 NA Intergenic L1PA16|LINE|L1 -71209 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 228-310 chr7 13004722 13004889 + 2 NA Intergenic L1MB1|LINE|L1 317172 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 186-112 chr3 114984696 114984857 + 2 NA intron (NM_015642, intron 1 of 9) intron (NM_015642, intron 1 of 9) -84151 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 353-301 chr22 25413674 25413979 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -32249 NM_001135772 91355 Hs.634058 NM_182492 ENSG00000100068 LRP5L - LDL receptor related protein 5 like protein-coding 609-46 chr18 63596365 63596847 + 2 NA intron (NM_001348268, intron 8 of 8) intron (NM_001348268, intron 8 of 8) 9263 NM_012397 5275 Hs.241407 NM_012397 ENSG00000197641 SERPINB13 HSHUR7SEQ|HUR7|PI13|headpin serpin family B member 13 protein-coding 322-444 chr5 164406020 164406226 + 2 NA Intergenic Intergenic 61279 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 297-413 chr6 99035620 99035858 + 2 NA Intergenic Intergenic -87733 NM_012160 26235 Hs.536850 NM_012160 ENSG00000112234 FBXL4 FBL4|FBL5|MTDPS13 F-box and leucine rich repeat protein 4 protein-coding 503-281 chr8 105202828 105203201 + 2 NA Intergenic L1MCa|LINE|L1 -115424 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 351-166 chr16 84540529 84540710 + 2 NA Intergenic AluSx|SINE|Alu -35960 NM_020947 57707 Hs.288274 NM_020947 ENSG00000140950 MEAK7 KIAA1609|TLDC1|mEAK-7 MTOR associated protein, eak-7 homolog protein-coding 372-401 chr5 63033113 63033389 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 454432 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 266-246 chr3 50455409 50455575 + 2 NA intron (NM_001291101, intron 2 of 37) intron (NM_001291101, intron 2 of 37) 48142 NM_006030 9254 Hs.476273 NM_006030 ENSG00000007402 CACNA2D2 CACNA2D calcium voltage-gated channel auxiliary subunit alpha2delta 2 protein-coding 323-573 chr9 20066325 20066528 + 2 NA Intergenic Intergenic -279407 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 424-121 chr2 12282381 12282703 + 2 NA intron (NR_110196, intron 3 of 5) Charlie7|DNA|hAT-Charlie 83412 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 387-232 chr3 117343880 117344222 + 2 NA Intergenic Intergenic 346874 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 175-37 chr11 95265208 95265360 + 2 NA Intergenic UCON40|Unknown|Unknown -32809 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 545-67 chr14 32134320 32134615 + 2 NA intron (NM_001030055, intron 3 of 6) intron (NM_001030055, intron 3 of 6) 57163 NM_001173 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 260-57 chr10 81247442 81247609 + 2 NA Intergenic Intergenic 597728 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 388-15 chr1 105310029 105310238 + 2 NA Intergenic Intergenic 308802 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 568-118 chr2 181020630 181021024 + 2 NA intron (NM_001278555, intron 3 of 5) intron (NM_001278555, intron 3 of 5) 39703 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 310-239 chr2 68497666 68497889 + 2 NA intron (NM_173545, intron 2 of 9) MSTA|LTR|ERVL-MaLR 30192 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 649-57 chr2 206922300 206922840 + 2 NA Intergenic L2c|LINE|L2 -16948 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 336-471 chr5 155464023 155464291 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 450402 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 470-126 chr2 52515105 52515541 + 2 NA Intergenic L1MA10|LINE|L1 144675 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 370-230 chr2 58500598 58500927 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -19991 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 336-550 chr8 111497849 111498173 + 2 NA Intergenic Intergenic 121372 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 476-149 chr2 137299727 137300161 + 2 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 534399 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 196-237 chr7 111177580 111177727 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 86526 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 314-619 chr9 131436217 131436496 + 2 NA intron (NM_013318, intron 2 of 30) AluSx3|SINE|Alu 6266 NM_013318 84726 Hs.743955 NM_013318 ENSG00000130723 PRRC2B BAT2L|BAT2L1|KIAA0515|LQFBS-1 proline rich coiled-coil 2B protein-coding 345-226 chr18 68515521 68515784 + 2 NA Intergenic Intergenic 199456 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 289-189 chr18 38555944 38556151 + 2 NA Intergenic Intergenic 898912 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 221-178 chr3 20697802 20697966 + 2 NA Intergenic Intergenic 355416 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 246-278 chr3 173851347 173851510 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) 69368 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 517-175 chr3 65627829 65628206 + 2 NA intron (NM_001365904, intron 1 of 24) L1ME3Cz|LINE|L1 -265799 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 385-172 chr2 58453001 58453229 + 2 NA Intergenic Intergenic -67638 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 557-73 chr17 72664496 72664865 + 2 NA intron (NM_001352692, intron 7 of 9) L2|LINE|L2 -24208 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 339-538 chr7 90014325 90014631 + 2 NA intron (NR_110029, intron 2 of 2) L1M8|LINE|L1 -104922 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 322-104 chr11 115826127 115826358 + 2 NA Intergenic L1MEd|LINE|L1 -66042 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 207-104 chr17 53218783 53218926 + 2 NA Intergenic L1MA8|LINE|L1 233349 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 339-334 chr21 32027223 32027436 + 2 NA Intergenic Intergenic 58966 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 483-222 chr5 164387851 164388306 + 2 NA Intergenic Intergenic 79324 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 391-254 chr4 40991883 40992181 + 2 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -134840 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 292-29 chr1 187827695 187827876 + 2 NA Intergenic Intergenic 384157 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 288-17 chr1 101373425 101373610 + 2 NA intron (NR_126402, intron 4 of 4) MIRb|SINE|MIR 49680 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 334-123 chr12 128695565 128695788 + 2 NA intron (NM_001136103, intron 6 of 8) intron (NM_001136103, intron 6 of 8) 128282 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 359-510 chr9 85445941 85446176 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 295971 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 299-489 chr9 112956168 112956327 + 2 NA Intergenic AluSz6|SINE|Alu 55945 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 321-383 chr3 118439929 118440141 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -201733 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 201-51 chr11 98849155 98849292 + 2 NA Intergenic MER61C|LTR|ERV1 -171726 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 546-36 chr11 28929556 28929972 + 2 NA Intergenic L1M5|LINE|L1 -452216 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 385-252 chr3 129656488 129656746 + 2 NA intron (NM_015008, intron 2 of 3) intron (NM_015008, intron 2 of 3) 32115 NM_015008 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 330-207 chr17 34936527 34936846 + 2 NA intron (NM_006584, intron 10 of 13) L1M4|LINE|L1 24774 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 296-324 chr4 14627070 14627349 + 2 NA intron (NR_126435, intron 3 of 6) L2|LINE|L2 260960 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 184-36 chr11 48193832 48193987 + 2 NA Intergenic L1M4a2|LINE|L1 -22901 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 210-281 chr8 65541966 65542104 + 2 NA intron (NR_033893, intron 1 of 4) intron (NR_033893, intron 1 of 4) 20631 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 527-13 chr1 220052517 220052901 + 2 NA Intergenic Intergenic -6204 NM_004446 2058 Hs.497788 NM_004446 ENSG00000136628 EPRS EARS|GLUPRORS|HLD15|PARS|PIG32|QARS|QPRS glutamyl-prolyl-tRNA synthetase protein-coding 366-320 chr4 96017427 96017646 + 2 NA Intergenic Intergenic 177443 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 267-389 chr7 37400847 37401029 + 2 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) -47270 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 475-121 chr2 18784705 18785139 + 2 NA Intergenic L1MD|LINE|L1 -195342 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 534-205 chr5 142397133 142397506 + 2 NA intron (NR_120664, intron 3 of 3) L2c|LINE|L2 72026 NR_120664 101926941 Hs.658945 NR_120664 ENSG00000231185 SPRY4-AS1 THCAT68 SPRY4 antisense RNA 1 ncRNA 149-56 chr2 99633211 99633324 + 2 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -143250 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 568-106 chr2 68729848 68730236 + 2 NA Intergenic L1ME4a|LINE|L1 -4769 NM_001166277 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 330-97 chr11 68646532 68646823 + 2 NA Intergenic L1M4a1|LINE|L1 -37867 NM_015973 51083 Hs.278959 NM_015973 ENSG00000069482 GAL ETL8|GAL-GMAP|GALN|GLNN|GMAP galanin and GMAP prepropeptide protein-coding 193-158 chr4 91406074 91406228 + 2 NA intron (NM_001145065, intron 10 of 10) L1P2|LINE|L1 871151 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 904-44 chr8 134145289 134145975 + 2 NA Intergenic Intergenic 259136 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 283-152 chr15 93525253 93525442 + 2 NA Intergenic Intergenic 319281 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 231-304 chr6 27387352 27387474 + 2 NA intron (NM_001322288, intron 1 of 3) L1MB4|LINE|L1 -1305 NM_001322293 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 289-78 chr11 34578729 34578965 + 2 NA Intergenic L1MB3|LINE|L1 -42246 NM_001206615 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 229-414 chr9 69851632 69851842 + 2 NA intron (NM_001010940, intron 2 of 5) AluJo|SINE|Alu 30920 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 261-399 chr8 139812120 139812275 + 2 NA intron (NM_001160372, intron 21 of 22) HAL1|LINE|L1 -109074 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 421-184 chr3 51001566 51001788 + 2 NA intron (NM_004947, intron 5 of 52) L1ME1|LINE|L1 326597 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 388-222 chr3 33670906 33671147 + 2 NA intron (NM_001365634, intron 6 of 35) L1MC1|LINE|L1 -11347 NM_001207044 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 236-18 chr1 159686865 159687016 + 2 NA Intergenic Intergenic 27649 NM_001329058 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 216-193 chr20 8627690 8627886 + 2 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) -203397 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 132-85 chr8 64361159 64361284 + 2 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 7337 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 190-5 chr1 109938789 109938943 + 2 NA Intergenic Intergenic 28017 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 530-4 chr1 59721916 59722347 + 2 NA intron (NM_001350790, intron 15 of 16) L1MC3|LINE|L1 11165 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 294-94 chr12 130562376 130562587 + 2 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 65975 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 330-289 chr2 132946755 132947031 + 2 NA intron (NM_207481, intron 8 of 17) AluJb|SINE|Alu 31336 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 348-546 chr9 8401404 8401604 + 2 NA intron (NM_130392, intron 21 of 30) intron (NM_130392, intron 21 of 30) 332442 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 459-217 chr4 82767669 82768096 + 2 NA intron (NM_001037582, intron 1 of 4) intron (NM_001037582, intron 1 of 4) -14452 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 366-35 chr1 239899134 239899373 + 2 NA intron (NR_046582, intron 1 of 1) intron (NR_046582, intron 1 of 1) 619 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 495-267 chr8 139929161 139929568 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 171171 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 341-522 chr8 82040599 82040834 + 2 NA Intergenic Intergenic -198430 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 138-89 chr8 84773365 84773475 + 2 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 67493 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 275-193 chr2 66980287 66980524 + 2 NA Intergenic Intergenic -57915 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 586-127 chr5 173588788 173589335 + 2 NA Intergenic Intergenic 9427 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 207-208 chr4 18285269 18285437 + 2 NA Intergenic L1MCb|LINE|L1 -263478 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 341-226 chr2 4726696 4726950 + 2 NA Intergenic Intergenic -70601 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 521-112 chr19 29361682 29361992 + 2 NA intron (NR_040029, intron 9 of 9) L1MA8|LINE|L1 -148686 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 372-82 chr11 96834230 96834566 + 2 NA Intergenic AluSq2|SINE|Alu 325973 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 317-181 chr16 66177207 66177498 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -189339 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 348-368 chr4 90385782 90386037 + 2 NA intron (NM_207491, intron 3 of 7) L1PB3|LINE|L1 150878 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 357-416 chr7 53479120 53479311 + 2 NA Intergenic L2a|LINE|L2 332716 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 349-80 chr10 97954683 97954892 + 2 NA intron (NM_001206528, intron 2 of 14) MLT1C|LTR|ERVL-MaLR 75834 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 320-225 chr18 45153516 45153720 + 2 NA Intergenic Intergenic -14345 NM_001371319 357-299 chr4 5302400 5302722 + 2 NA intron (NM_001306082, intron 4 of 12) L1M5|LINE|L1 -222008 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 307-253 chr2 165118059 165118351 + 2 NA intron (NM_006922, intron 18 of 27) intron (NM_006922, intron 18 of 27) 85845 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 161-42 chr19 33939314 33939432 + 2 NA Intergenic Intergenic 142503 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 495-220 chr6 91417415 91417756 + 2 NA Intergenic Intergenic -104075 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 322-92 chr11 78635213 78635490 + 2 NA Intergenic L1M2|LINE|L1 -60487 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 450-70 chr12 133028599 133029010 + 2 NA Intergenic AluSq2|SINE|Alu 8418 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 519-18 chr10 8601076 8601563 + 2 NA Intergenic Intergenic -6928 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 228-261 chr5 23641738 23641867 + 2 NA Intergenic L1MA3|LINE|L1 134147 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 310-254 chr2 123004702 123004906 + 2 NA Intergenic L1M2|LINE|L1 68677 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 190-36 chr12 52851752 52851906 + 2 NA Intergenic Intergenic -2835 NM_173352 196374 Hs.665267 NM_173352 ENSG00000170423 KRT78 CK-78|K5B|K78|Kb40 keratin 78 protein-coding 373-425 chr8 134408481 134408788 + 2 NA Intergenic AluJo|SINE|Alu -189437 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 184-110 chr22 27851314 27851426 + 2 NA TTS (NM_001284277) TTS (NM_001284277) -49614 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 247-9 chr1 79135884 79136125 + 2 NA Intergenic L1ME2|LINE|L1 -129274 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 480-57 chr12 43157165 43157530 + 2 NA intron (NR_146866, intron 1 of 3) L2c|LINE|L2 2032 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 176-129 chr7 37830037 37830161 + 2 NA Intergenic Intergenic -18498 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 465-12 chr1 191985463 191985828 + 2 NA Intergenic Intergenic -172817 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 305-371 chr4 16951001 16951237 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -52310 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 349-123 chr12 33367230 33367564 + 2 NA Intergenic Intergenic 72422 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 360-449 chr8 18703271 18703523 + 2 NA intron (NM_015310, intron 9 of 15) intron (NM_015310, intron 9 of 15) 105470 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 476-103 chr16 54096777 54097083 + 2 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) 57537 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 330-64 chr10 77617074 77617272 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 20635 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 433-133 chr2 82618562 82618941 + 2 NA Intergenic Intergenic -238052 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 247-295 chr4 58046326 58046482 + 2 NA Intergenic L1M4a2|LINE|L1 489924 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 221-243 chr5 82957196 82957392 + 2 NA Intergenic L1ME3A|LINE|L1 -97458 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 497-282 chr8 92975015 92975482 + 2 NA Intergenic L1MEc|LINE|L1 -9104 NM_001171799 286144 Hs.440643 NM_001171795 ENSG00000205133 TRIQK C8orf83|PRO0845|UPF0599 triple QxxK/R motif containing protein-coding 323-165 chr15 86523838 86524022 + 2 NA intron (NM_152336, intron 19 of 24) intron (NM_152336, intron 19 of 24) -206962 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 534-160 chr3 39069893 39070269 + 2 NA intron (NR_144401, intron 7 of 19) intron (NR_144401, intron 7 of 19) 17789 NM_001346228 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 381-319 chr5 113679597 113679961 + 2 NA Intergenic Intergenic 166085 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 245-369 chr9 72961345 72961494 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -8366 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 296-359 chr5 25689968 25690212 + 2 NA Intergenic Intergenic 499137 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 219-255 chr4 43404276 43404480 + 2 NA Intergenic Intergenic 88165 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 464-39 chr11 130742568 130742913 + 2 NA Intergenic L1ME2|LINE|L1 69784 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 224-133 chr2 8955925 8956081 + 2 NA intron (NR_135600, intron 1 of 12) Tigger1|DNA|TcMar-Tigger 47681 NR_135606 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 197-164 chr5 32501548 32501668 + 2 NA Intergenic Intergenic -56868 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 359-352 chr4 36621078 36621289 + 2 NA intron (NR_149124, intron 1 of 4) L1MB1|LINE|L1 20717 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 312-469 chr7 4289508 4289726 + 2 NA Intergenic L1MD2|LINE|L1 -154780 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 366-403 chr7 20541699 20541914 + 2 NA Intergenic L1PA10|LINE|L1 -73861 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 260-152 chr15 94952728 94952919 + 2 NA Intergenic Intergenic 97460 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 226-339 chr8 67518110 67518311 + 2 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 174376 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 152-15 chr10 126879724 126879825 + 2 NA Intergenic Intergenic -25635 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 465-247 chr5 178852594 178853040 + 2 NA Intergenic L1MCa|LINE|L1 -7136 NM_058230 117608 Hs.724051 NM_058230 ENSG00000178338 ZNF354B KID2 zinc finger protein 354B protein-coding 368-309 chr3 168887439 168887716 + 2 NA Intergenic Intergenic -14368 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 396-212 chr3 35183926 35184138 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 209991 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 417-138 chr2 80528967 80529335 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 215772 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 354-266 chr21 18219600 18219912 + 2 NA intron (NM_001204178, intron 2 of 5) L1MA4|LINE|L1 -25077 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 472-263 chr6 35356182 35356493 + 2 NA intron (NM_001171819, intron 2 of 6) intron (NM_001171819, intron 2 of 6) 13779 NM_001171819 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 350-428 chr5 171575983 171576283 + 2 NA Intergenic L1ME3F|LINE|L1 156486 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 259-341 chr6 55155436 55155665 + 2 NA intron (NM_001526, intron 1 of 7) intron (NM_001526, intron 1 of 7) 49090 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 326-278 chr2 188824883 188825105 + 2 NA Intergenic Intergenic -34871 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 359-527 chrX 141203775 141204078 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -26797 NM_012317 23641 Hs.45231 NM_012317 ENSG00000182195 LDOC1 BCUR1|Mar7|Mart7|RTL7|SIRH7 LDOC1 regulator of NFKB signaling protein-coding 621-11 chr1 231500760 231501314 + 2 NA Intergenic Intergenic -24512 NR_033826 645339 Hs.382049 NR_033826 SNRPD2P2 - small nuclear ribonucleoprotein D2 pseudogene 2 pseudo 373-23 chr1 118234233 118234513 + 2 NA Intergenic L1PB1|LINE|L1 -49145 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 357-317 chr4 94329025 94329263 + 2 NA intron (NM_014485, intron 2 of 5) intron (NM_014485, intron 2 of 5) 13692 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 386-322 chr7 26973850 26974061 + 2 NA Intergenic L1PA13|LINE|L1 -109365 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 333-152 chr14 66408542 66408773 + 2 NA Intergenic L1ME3Cz|LINE|L1 -77714 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 232-80 chr12 108873901 108874040 + 2 NA Intergenic Intergenic -6122 NM_001917 1610 Hs.113227 NM_001917 ENSG00000110887 DAO DAAO|DAMOX|OXDA D-amino acid oxidase protein-coding 394-241 chr4 76684176 76684418 + 2 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 108746 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 426-127 chr2 33972348 33972634 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -94735 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 453-61 chr13 44805480 44805810 + 2 NA intron (NR_038433, intron 1 of 2) intron (NR_038433, intron 1 of 2) 3985 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 366-432 chr8 53136605 53136846 + 2 NA Intergenic LTR12|LTR|ERV1 114912 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 232-217 chr20 43098817 43099023 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 90986 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 387-126 chr16 14290181 14290454 + 2 NA Intergenic L1MA10|LINE|L1 -11971 NR_132983 100129781 Hs.190748 NR_132983 MIR193BHG - MIR193B host gene ncRNA 339-196 chr16 62310512 62310770 + 2 NA Intergenic Intergenic -274203 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 289-62 chr10 76260453 76260648 + 2 NA intron (NM_001305581, intron 5 of 6) L1MA5A|LINE|L1 477789 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 316-405 chr4 96883559 96883873 + 2 NA Intergenic Intergenic -483210 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 255-411 chr8 46523279 46523438 + 2 NA Intergenic ALR/Alpha|Satellite|centr 94285 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 402-215 chr3 105001831 105002150 + 2 NA Intergenic L1PA17|LINE|L1 -364723 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 215-193 chr3 78744627 78744788 + 2 NA intron (NM_002941, intron 5 of 30) L2a|LINE|L2 274752 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 354-68 chr10 130434070 130434335 + 2 NA Intergenic Intergenic 297793 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 408-125 chr16 8446267 8446602 + 2 NA Intergenic L1MEc|LINE|L1 143404 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 363-369 chr5 116743843 116744174 + 2 NA intron (NR_104678, intron 3 of 3) THE1D|LTR|ERVL-MaLR 18201 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 309-136 chr13 108657578 108657790 + 2 NA intron (NM_001198950, intron 1 of 34) L1M5|LINE|L1 28073 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 276-108 chr12 37833365 37833613 + 2 NA Intergenic ALR/Alpha|Satellite|centr -483285 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 245-259 chr4 100774971 100775159 + 2 NA Intergenic L1PA15-16|LINE|L1 -99952 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 194-214 chr8 127490689 127490846 + 2 NA Intergenic MIRc|SINE|MIR -8628 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 433-217 chr5 23107710 23107986 + 2 NA Intergenic L1MA4A|LINE|L1 -254504 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 416-121 chr14 65534691 65534956 + 2 NA intron (NM_004480, intron 2 of 9) L1PREC2|LINE|L1 63721 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 508-36 chr11 7070599 7071064 + 2 NA intron (NM_176822, intron 11 of 11) MIR|SINE|MIR -18167 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 610-181 chrX 77303579 77304043 + 2 NA Intergenic L1M2|LINE|L1 -143578 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 548-154 chr3 127367972 127368508 + 2 NA intron (NR_110147, intron 1 of 4) intron (NR_110147, intron 1 of 4) 22430 NR_110147 101927123 Hs.526761 NR_110147 ENSG00000244215 LINC02016 - long intergenic non-protein coding RNA 2016 ncRNA 422-156 chr2 154486663 154486890 + 2 NA Intergenic Intergenic -29338 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 225-111 chr16 23867305 23867524 + 2 NA intron (NM_002738, intron 2 of 16) AluSx|SINE|Alu 31431 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 200-149 chr2 236357566 236357724 + 2 NA intron (NR_073043, intron 15 of 19) (AT)n|Simple_repeat|Simple_repeat -93300 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 616-94 chr20 19353109 19353520 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -68718 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 315-109 chr12 93669314 93669580 + 2 NA Intergenic Intergenic -7924 NR_135147 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 418-125 chr2 128334313 128334586 + 2 NA Intergenic L1ME2|LINE|L1 -15581 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 274-50 chr10 79641645 79641858 + 2 NA intron (NR_134315, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat 21434 NR_134315 105378385 Hs.737310 NR_134315 ENSG00000226676 LINC02679 - long intergenic non-protein coding RNA 2679 ncRNA 252-322 chr5 24514970 24515187 + 2 NA intron (NM_001362460, intron 5 of 9) intron (NM_001362460, intron 5 of 9) 129900 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 596-130 chr5 22399130 22399704 + 2 NA intron (NM_001364104, intron 2 of 13) MLT1C-int|LTR|ERVL-MaLR -185567 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 311-209 chr18 12942262 12942564 + 2 NA Intergenic MLT2C2|LTR|ERVL -5571 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 226-166 chr2 89798531 89798726 + 2 NA Intergenic Intergenic -160721 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 508-119 chr2 183596449 183596815 + 2 NA Intergenic Intergenic 472189 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 364-146 chr15 69013122 69013426 + 2 NA intron (NR_033672, intron 2 of 16) L2c|LINE|L2 -1421 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 329-240 chr18 59749774 59749987 + 2 NA Intergenic Intergenic -52457 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 725-20 chr13 83418713 83419311 + 2 NA Intergenic Intergenic 463381 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 550-224 chr8 36020842 36021211 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -310706 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 273-443 chr8 59444743 59444921 + 2 NA Intergenic L1MA2|LINE|L1 325622 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 325-65 chr10 66254956 66255157 + 2 NA intron (NM_001127384, intron 13 of 17) MER84-int|LTR|ERV1 -670980 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 296-373 chr5 82040346 82040604 + 2 NA intron (NM_031482, intron 2 of 7) L1ME4c|LINE|L1 68452 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 522-217 chr6 23571386 23571730 + 2 NA Intergenic Intergenic -554657 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 355-401 chr5 56989845 56990091 + 2 NA Intergenic Intergenic -37838 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 565-53 chr16 35386376 35386755 + 2 NA intron (NR_027080, intron 6 of 6) intron (NR_027080, intron 6 of 6) 23034 NR_027079 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 308-26 chr1 153269489 153269747 + 2 NA Intergenic L1MA8|LINE|L1 9931 NM_000427 4014 Hs.251680 NM_000427 ENSG00000203782 LOR - loricrin protein-coding 216-157 chr2 10392221 10392424 + 2 NA intron (NM_001258359, intron 1 of 4) AluJo|SINE|Alu 23558 NM_001258359 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 302-359 chr5 143739249 143739521 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 59525 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 327-212 chr18 28389181 28389404 + 2 NA Intergenic L1PREC2|LINE|L1 -212162 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 783-79 chr9 10341036 10341536 + 2 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 271716 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 284-124 chr14 82465839 82466029 + 2 NA Intergenic L1PA11|LINE|L1 -176698 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 501-123 chr2 207303270 207303743 + 2 NA Intergenic L1MB8|LINE|L1 -34082 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 322-355 chr3 163330541 163330830 + 2 NA Intergenic Intergenic -27384 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 437-216 chr5 30162231 30162603 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 281857 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 348-541 chr8 137813715 137814026 + 2 NA intron (NR_161374, intron 7 of 7) L1PA4|LINE|L1 269675 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 775-69 chr5 106370068 106370675 + 2 NA Intergenic L1MA2|LINE|L1 640643 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 314-482 chr5 155775434 155775601 + 2 NA Intergenic MIRb|SINE|MIR -551240 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 213-67 chr12 26066506 26066692 + 2 NA intron (NM_001164746, intron 3 of 4) intron (NM_001164746, intron 3 of 4) 14035 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 238-380 chr8 75759483 75759632 + 2 NA Intergenic Intergenic 219589 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 292-407 chr7 40773896 40774112 + 2 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 205935 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 212-119 chr16 82285782 82285944 + 2 NA Intergenic Intergenic -115639 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 320-117 chr12 43149087 43149254 + 2 NA Intergenic Intergenic -6145 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 327-373 chr4 111158550 111158817 + 2 NA Intergenic L1MA6|LINE|L1 -298036 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 144-15 chr11 40828426 40828516 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) -535341 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 281-93 chr12 80391893 80392085 + 2 NA Intergenic Intergenic -52246 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 519-102 chr2 45747158 45747572 + 2 NA intron (NM_005400, intron 1 of 14) L1MB2|LINE|L1 95690 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 696-98 chr7 52664916 52665377 + 2 NA Intergenic Intergenic -370487 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 228-20 chr1 164131841 164132013 + 2 NA Intergenic Intergenic -427433 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 174-148 chr8 132120566 132120715 + 2 NA TTS (NM_004519) TTS (NM_004519) -15375 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 240-13 chr1 100616793 100617023 + 2 NA Intergenic L3b|LINE|CR1 30096 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 288-251 chr3 20468476 20468662 + 2 NA Intergenic L1MCa|LINE|L1 126101 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 304-239 chr2 15355847 15356112 + 2 NA intron (NR_052013, intron 33 of 50) intron (NR_052013, intron 33 of 50) 205355 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 219-315 chr6 78513644 78513821 + 2 NA Intergenic MIRb|SINE|MIR 25577 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 262-253 chr20 53411338 53411572 + 2 NA intron (NM_173485, intron 2 of 2) MIR|SINE|MIR -141315 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 578-172 chr8 56284601 56285032 + 2 NA Intergenic Intergenic 35960 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 206-233 chr6 39965541 39965674 + 2 NA Intergenic L1MEd|LINE|L1 -31145 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 281-149 chr16 59685099 59685247 + 2 NA Intergenic Intergenic 70018 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 679-40 chr16 77226610 77227026 + 2 NA Intergenic MER113|DNA|hAT-Charlie 27410 NM_001348924 100130958 Hs.734779 NM_001129979 ENSG00000205078 SYCE1L MRP2 synaptonemal complex central element protein 1 like protein-coding 343-158 chr15 54159859 54160082 + 2 NA intron (NM_001329919, intron 4 of 31) intron (NM_001329919, intron 4 of 31) 147322 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 704-62 chr4 120809376 120809920 + 2 NA intron (NM_001300824, intron 7 of 13) intron (NM_001300824, intron 7 of 13) 113218 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 336-420 chr4 72101809 72102113 + 2 NA intron (NM_001144756, intron 2 of 4) intron (NM_001144756, intron 2 of 4) 62829 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 418-171 chr3 161960985 161961205 + 2 NA Intergenic Intergenic 464287 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 537-10 chr1 104596279 104596693 + 2 NA Intergenic L1MEg|LINE|L1 523463 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 674-67 chr4 79716346 79716916 + 2 NA Intergenic HAL1|LINE|L1 -110840 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 405-139 chr2 67510271 67510497 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 113051 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 138-64 chr5 20113559 20113658 + 2 NA intron (NM_001291956, intron 2 of 14) MARNA|DNA|TcMar-Mariner -125408 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 166-67 chr21 26352628 26352767 + 2 NA Intergenic Intergenic -40938 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 443-9 chr1 80804439 80804789 + 2 NA Intergenic Intergenic 163327 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 297-65 chr11 19306485 19306699 + 2 NA Intergenic Intergenic -44132 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 253-308 chr4 164624039 164624255 + 2 NA Intergenic L1MA4A|LINE|L1 -129984 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 342-15 chr1 80705475 80705778 + 2 NA Intergenic MIRc|SINE|MIR 64339 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 161-43 chr19 51826376 51826526 + 2 NA TTS (NM_002030) TTS (NM_002030) 31294 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 558-53 chr14 53151056 53151585 + 2 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 2003 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 430-274 chr6 156495126 156495489 + 2 NA Intergenic MIR|SINE|MIR 116557 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 283-307 chr3 197318197 197318455 + 2 NA Intergenic L1ME4a|LINE|L1 -19005 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 397-256 chr5 76118416 76118674 + 2 NA intron (NM_014979, intron 1 of 12) L1ME4a|LINE|L1 35162 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 449-114 chr2 22525608 22525961 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger -10695 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 255-129 chr15 80520953 80521122 + 2 NA intron (NM_014862, intron 8 of 18) MER75|DNA|PiggyBac 41907 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 482-65 chr12 38624514 38624913 + 2 NA Intergenic Intergenic 280878 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 237-204 chr20 7150130 7150307 + 2 NA intron (NR_110609, intron 5 of 7) intron (NR_110609, intron 5 of 7) 103984 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 399-314 chr8 126046165 126046513 + 2 NA Intergenic L1PA15-16|LINE|L1 -95142 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 311-338 chr3 45788509 45788665 + 2 NA intron (NM_022405, intron 1 of 9) L1M6|LINE|L1 7949 NM_020208 54716 Hs.413095 NM_020208 ENSG00000163817 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 member 20 protein-coding 464-162 chr3 75733419 75733771 + 2 NA intron (NM_001324028, intron 4 of 5) AluY|SINE|Alu -4685 NR_036235 100422955 NR_036235 ENSG00000266396 MIR4273 - microRNA 4273 ncRNA 326-411 chr5 61748529 61748752 + 2 NA Intergenic Intergenic -12942 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 495-87 chr17 61571351 61571685 + 2 NA Intergenic Intergenic 19701 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 280-446 chr9 108751479 108751709 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 104392 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 222-263 chr4 42980805 42980989 + 2 NA intron (NM_001080476, intron 2 of 3) L1MA8|LINE|L1 87631 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 130-13 chr10 102507082 102507195 + 2 NA intron (NM_001178133, intron 1 of 10) intron (NM_001178133, intron 1 of 10) 3166 NM_001178133 51684 Hs.404089 NM_016169 ENSG00000107882 SUFU JBTS32|PRO1280|SUFUH|SUFUXL SUFU negative regulator of hedgehog signaling protein-coding 337-402 chr4 77496766 77496973 + 2 NA Intergenic Intergenic -14884 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 387 chr1 19624209 19624489 + 2 NA intron (NM_001032363, intron 3 of 3) AluSx|SINE|Alu 16542 NR_077246 644068 Hs.660760 NR_077246 RPS14P3 RPS14_1_16 ribosomal protein S14 pseudogene 3 pseudo 165-31 chr14 61127585 61127719 + 2 NA Intergenic L3|LINE|CR1 -145962 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 236-249 chr4 20873356 20873539 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) 9263 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 328-324 chr20 60587990 60588159 + 2 NA Intergenic Intergenic 23512 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 251-107 chr15 51586393 51586570 + 2 NA intron (NM_001174116, intron 1 of 42) intron (NM_001174116, intron 1 of 42) 36290 NM_001174117 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 348-467 chr6 121152995 121153212 + 2 NA intron (NR_104452, intron 27 of 35) L1PA7|LINE|L1 181377 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 556-240 chr9 73888766 73889232 + 2 NA Intergenic Intergenic -482532 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 253-374 chr7 8324123 8324278 + 2 NA intron (NR_125740, intron 3 of 5) AluJr|SINE|Alu -61588 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 451-69 chr14 62677826 62678260 + 2 NA Intergenic Intergenic 367415 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 506-217 chr4 170269862 170270255 + 2 NA intron (NR_125889, intron 1 of 2) intron (NR_125889, intron 1 of 2) 43467 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 282-144 chr15 56297281 56297447 + 2 NA Intergenic Intergenic -52282 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 337-373 chr3 171166912 171167122 + 2 NA intron (NM_001161563, intron 10 of 31) intron (NM_001161563, intron 10 of 31) -60258 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 349-83 chr10 106129817 106130053 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -10230 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 514-152 chr2 120328625 120328954 + 2 NA Intergenic Intergenic -17347 NM_002193 3625 Hs.1735 NM_002193 ENSG00000163083 INHBB - inhibin subunit beta B protein-coding 135-20 chr14 74170387 74170475 + 2 NA intron (NM_001024674, intron 5 of 5) intron (NM_001024674, intron 5 of 5) -69018 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 258-421 chr9 27752120 27752356 + 2 NA Intergenic Intergenic -178372 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 325-105 chr11 86798187 86798351 + 2 NA intron (NM_001293180, intron 1 of 1) Charlie29a|DNA|hAT-Charlie -2273 NM_001293179 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 234-199 chr2 205271048 205271258 + 2 NA intron (NM_057177, intron 16 of 21) Tigger12A|DNA|TcMar-Tigger -411347 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 260-309 chr4 62780667 62780843 + 2 NA Intergenic Intergenic -618990 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 483-292 chrX 68771597 68771957 + 2 NA Intergenic Intergenic -57220 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 181-43 chr14 83731465 83731606 + 2 NA Intergenic Intergenic 1088903 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 258-15 chr1 115589258 115589488 + 2 NA Intergenic MER61-int|LTR|ERV1 -52597 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 620-99 chr4 70455306 70455822 + 2 NA intron (NM_001145006, intron 1 of 3) intron (NM_001145006, intron 1 of 3) -16394 NM_001145007 4589 Hs.631946 NM_152291 ENSG00000171195 MUC7 MG2 mucin 7, secreted protein-coding 279-430 chr8 138192404 138192587 + 2 NA intron (NM_015912, intron 9 of 19) LTR8|LTR|ERV1 -108950 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 514-125 chr18 39581180 39581443 + 2 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) 40864 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 208-46 chr11 104029455 104029616 + 2 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) -7105 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 359-299 chr21 34166753 34167032 + 2 NA Intergenic MER61A|LTR|ERV1 -13785 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 287-43 chr10 11376370 11376546 + 2 NA Intergenic AluSq|SINE|Alu -31784 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 638-54 chr17 34805247 34805843 + 2 NA Intergenic L2a|LINE|L2 155915 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 198-168 chr3 101010230 101010404 + 2 NA Intergenic Intergenic -16827 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 491-278 chr9 96690407 96690818 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -35209 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 500-193 chr3 166602172 166602557 + 2 NA Intergenic Intergenic -296319 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 156-68 chr3 111026998 111027093 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 42914 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 352-122 chr13 47661597 47661888 + 2 NA Intergenic Intergenic 270880 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 736-95 chrX 78426998 78427651 + 2 NA Intergenic L1MA6|LINE|L1 -99633 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 334-265 chr2 67137125 67137434 + 2 NA intron (NR_038844, intron 6 of 7) L1MC5a|LINE|L1 50833 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 154-91 chr5 137113953 137114055 + 2 NA intron (NM_004598, intron 4 of 10) intron (NM_004598, intron 4 of 10) -14193 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 255-448 chr8 138981862 138982050 + 2 NA Intergenic L1M4a2|LINE|L1 -67915 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 287-270 chr3 179183647 179183885 + 2 NA intron (NM_006218, intron 1 of 20) intron (NM_006218, intron 1 of 20) 35409 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 275-130 chr16 59836930 59837120 + 2 NA Intergenic MIRc|SINE|MIR -18328 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 384-298 chr5 91698840 91699081 + 2 NA Intergenic Intergenic -315643 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 314-102 chr11 78866097 78866311 + 2 NA intron (NM_001098816, intron 9 of 33) intron (NM_001098816, intron 9 of 33) -291340 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 331-408 chr5 9840199 9840415 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -14070 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 208-4 chr1 56940115 56940309 + 2 NA intron (NM_000066, intron 9 of 11) (AATTT)n|Simple_repeat|Simple_repeat 25803 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 223-182 chr20 15749086 15749281 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 174131 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 312-395 chr4 182959096 182959282 + 2 NA Intergenic LTR81A|LTR|Gypsy -41712 NM_001351748 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 228-265 chr5 39697843 39698030 + 2 NA Intergenic Intergenic 177505 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 563-74 chr18 9533191 9533597 + 2 NA exon (NM_006788, exon 8 of 10) exon (NM_006788, exon 8 of 10) 57881 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 370-489 chrX 85143771 85144116 + 2 NA intron (NM_001367858, intron 2 of 11) intron (NM_001367858, intron 2 of 11) -34975 NM_001012980 340562 Hs.640783 NM_001012980 ENSG00000184788 SATL1 - spermidine/spermine N1-acetyl transferase like 1 protein-coding 291-88 chr12 12281847 12282113 + 2 NA Intergenic L1MC4|LINE|L1 -14936 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 265-311 chr5 79960802 79961056 + 2 NA intron (NR_131226, intron 2 of 2) intron (NR_131226, intron 2 of 2) 24350 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 322-297 chr20 54522884 54523116 + 2 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 47407 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 283-285 chr3 30492182 30492413 + 2 NA Intergenic Intergenic -26571 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 378-101 chr12 20075108 20075470 + 2 NA intron (NR_040098, intron 2 of 2) MIRb|SINE|MIR 52612 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 536-92 chr17 40344334 40344734 + 2 NA intron (NM_001024809, intron 1 of 7) intron (NM_001024809, intron 1 of 7) -1398 NR_110861 101929693 Hs.655717 NR_110861 ENSG00000265666 RARA-AS1 - RARA antisense RNA 1 ncRNA 272-192 chr2 65507772 65507943 + 2 NA Intergenic L1MD3|LINE|L1 -75258 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 209-138 chr19 28694823 28694970 + 2 NA intron (NR_110759, intron 5 of 9) LTR3A|LTR|ERVK 32798 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 364-8 chr1 41988253 41988443 + 2 NA intron (NR_038261, intron 1 of 3) L1MA8|LINE|L1 47586 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 508-221 chr7 34503194 34503512 + 2 NA intron (NR_033665, intron 2 of 3) MSTB|LTR|ERVL-MaLR -154865 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 406-220 chr5 2099770 2100082 + 2 NA Intergenic Intergenic 212275 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 330-348 chr3 86661061 86661312 + 2 NA Intergenic Intergenic 179243 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 386-132 chr17 74074971 74075195 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -128595 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 151-53 chr3 31879806 31879933 + 2 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -101881 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 373-325 chr5 85995578 85995947 + 2 NA Intergenic LTR37A|LTR|ERV1 -286682 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 381-88 chr12 93912689 93912921 + 2 NA intron (NR_135017, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 30801 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 533-222 chr7 129341232 129341579 + 2 NA intron (NM_001130720, intron 1 of 16) MER34A1|LTR|ERV1 -26975 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 389-143 chr18 25643008 25643385 + 2 NA Intergenic Intergenic -291030 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 222-246 chr3 122867000 122867183 + 2 NA intron (NM_032839, intron 7 of 8) L3|LINE|CR1 -19422 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 366-165 chr17 54663263 54663605 + 2 NA Intergenic L1PA8A|LINE|L1 -237257 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 603-108 chr3 71996782 71997303 + 2 NA Intergenic MER39|LTR|ERV1 103413 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 477-110 chr16 56084917 56085246 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger 106013 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 648-133 chr7 31981101 31981576 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 89069 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 501-63 chr13 114082719 114083048 + 2 NA intron (NM_001320821, intron 1 of 25).2 MER63C|DNA|hAT-Blackjack -4928 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 294-500 chr9 82223467 82223653 + 2 NA Intergenic L1MB8|LINE|L1 234788 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 238-248 chr3 142923912 142924078 + 2 NA Intergenic L1MC1|LINE|L1 -2680 NR_038455 100507389 Hs.38715 NR_038455 ENSG00000243818 LOC100507389 - uncharacterized LOC100507389 ncRNA 210-150 chr2 211949604 211949774 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 476671 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 404-70 chr12 1037384 1037726 + 2 NA intron (NR_027949, intron 2 of 15) L3|LINE|CR1 9807 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 140-5 chr10 16044210 16044343 + 2 NA Intergenic Intergenic -183743 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 273-187 chr18 58108744 58108988 + 2 NA intron (NM_001144964, intron 1 of 30) MIRb|SINE|MIR -40454 NM_001144969 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 356-464 chr7 126262166 126262429 + 2 NA Intergenic L1M7|LINE|L1 795887 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 216-327 chr7 121768150 121768318 + 2 NA Intergenic Intergenic -104927 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 469-246 chr6 81439808 81440181 + 2 NA Intergenic L1MA4A|LINE|L1 312687 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 340-397 chr4 43004349 43004597 + 2 NA intron (NM_001080476, intron 2 of 3) THE1D-int|LTR|ERVL-MaLR 111207 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 770-12 chr12 60031586 60032185 + 2 NA Intergenic Intergenic 342515 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 314-490 chr6 6740435 6740601 + 2 NA Intergenic AluSx|SINE|Alu -117692 NR_026970 285780 Hs.655737 NM_173675 ENSG00000216863 LY86-AS1 LY86-AS|LY86AS LY86 antisense RNA 1 ncRNA 271-306 chr4 61428899 61429088 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 226821 NM_001371342 339-145 chr13 104325442 104325690 + 2 NA Intergenic Intergenic 900366 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 382-178 chr2 34582375 34582605 + 2 NA Intergenic L1ME1|LINE|L1 -95067 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 239-276 chr4 44767101 44767287 + 2 NA Intergenic Intergenic -40560 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 308-276 chr21 30551724 30551881 + 2 NA Intergenic AluSc8|SINE|Alu 9511 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 258-351 chr6 129432550 129432744 + 2 NA intron (NM_000426, intron 41 of 64) MER102a|DNA|hAT-Charlie 277530 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 316-517 chr7 61041354 61041604 + 2 NA Intergenic Intergenic 2262577 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 483-241 chr7 41034660 41035004 + 2 NA Intergenic Intergenic -54893 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 325-96 chr11 25141319 25141490 + 2 NA Intergenic L1PA3|LINE|L1 644351 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 243-451 chr8 103556655 103556850 + 2 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -54842 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 518-108 chr17 52195494 52195903 + 2 NA Intergenic Intergenic -35681 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 937-20 chr3 104478494 104479184 + 2 NA Intergenic L1PREC2|LINE|L1 -887874 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 429-76 chr12 129085895 129086171 + 2 NA intron (NM_133448, intron 5 of 8) MLT1D|LTR|ERVL-MaLR -23657 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 150-5 chr1 118714199 118714342 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 274073 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 279-445 chr9 103379286 103379541 + 2 NA Intergenic L1ME1|LINE|L1 -54380 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 291-267 chr21 20013627 20013866 + 2 NA Intergenic Intergenic -113991 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 208-210 chr5 58108344 58108525 + 2 NA intron (NR_104669, intron 4 of 4) intron (NR_104669, intron 4 of 4) 13907 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 1004-2 chr1 180383497 180384352 + 2 NA intron (NM_032360, intron 6 of 7) L1MA4A|LINE|L1 54466 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 666-72 chr21 44679584 44679986 + 2 NA intron (NM_144991, intron 1 of 11) L1MA4A|LINE|L1 2378 NM_181686 353332 Hs.688628 NM_181686 ENSG00000187175 KRTAP12-1 KAP12.1|KRTAP12.1 keratin associated protein 12-1 protein-coding 347-532 chr8 135427240 135427504 + 2 NA Intergenic Intergenic -30084 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 281-426 chr8 5117338 5117500 + 2 NA Intergenic MIR3|SINE|MIR -122505 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 491-17 chr10 58664550 58664850 + 2 NA intron (NM_001080512, intron 2 of 20) L1MCc|LINE|L1 -50315 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 265-240 chr3 62534861 62535081 + 2 NA intron (NM_183393, intron 12 of 26) intron (NM_183393, intron 12 of 26) -161421 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 392-343 chr8 143004983 143005342 + 2 NA intron (NR_026913, intron 1 of 1) AluSz|SINE|Alu 9334 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 351-232 chr2 124190730 124191010 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 165583 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 272-88 chr12 13817627 13817782 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 162652 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 625-39 chr17 69803722 69804166 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -157763 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 196-10 chr1 84143813 84143964 + 2 NA promoter-TSS (NM_182948) promoter-TSS (NM_182948) -383 NM_001300916 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 357-25 chr1 227574846 227575072 + 2 NA intron (NM_001367909, intron 1 of 3) AluY|SINE|Alu 11403 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 343-436 chr5 87610924 87611175 + 2 NA Intergenic Intergenic -50993 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 562-72 chr16 50671988 50672414 + 2 NA TTS (NR_110908) TTS (NR_110908) 3346 NR_110908 101927272 Hs.460777 NR_110908 ENSG00000260249 LOC101927272 - uncharacterized LOC101927272 ncRNA 330-117 chr12 26086774 26086958 + 2 NA Intergenic Intergenic 34302 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 434-263 chr7 68735472 68735852 + 2 NA Intergenic Intergenic 715409 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 204-222 chr4 94522747 94522936 + 2 NA intron (NM_001256428, intron 2 of 11) intron (NM_001256428, intron 2 of 11) 70899 NM_001256428 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 237-367 chr8 21410511 21410690 + 2 NA Intergenic Intergenic 112361 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 192-17 chr10 19579488 19579662 + 2 NA intron (NM_001142308, intron 33 of 39) intron (NM_001142308, intron 33 of 39) 148975 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 288-457 chr8 132386677 132386860 + 2 NA intron (NM_004519, intron 1 of 14) L1M5|LINE|L1 60494 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 364-74 chr10 111475893 111476172 + 2 NA Intergenic Intergenic 361741 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 305-302 chr20 11646819 11647030 + 2 NA Intergenic MER52D|LTR|ERV1 223791 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 358-279 chr22 34030070 34030281 + 2 NA Intergenic L1MA9|LINE|L1 -107287 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 161-123 chr8 86602348 86602471 + 2 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 87974 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 134-31 chr14 51181130 51181233 + 2 NA Intergenic Intergenic -59066 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 258-431 chr9 115343615 115343832 + 2 NA intron (NR_163556, intron 4 of 7) L1M7|LINE|L1 201905 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 371-352 chr7 6616462 6616709 + 2 NA intron (NM_017560, intron 1 of 2) AluSx|SINE|Alu 975 NM_001353546 54753 Hs.592170 NM_017560 ENSG00000236609 ZNF853 - zinc finger protein 853 protein-coding 308-428 chr6 85952554 85952772 + 2 NA Intergenic L1PB3|LINE|L1 -273930 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 301-435 chr8 13759076 13759301 + 2 NA Intergenic L1MA9|LINE|L1 129498 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 371-111 chr14 72764109 72764378 + 2 NA intron (NM_001280544, intron 2 of 9) MER21C|LTR|ERVL 128406 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 328-197 chr16 71440754 71440947 + 2 NA intron (NM_001367365, intron 1 of 9) intron (NM_001367365, intron 1 of 9) 1204 NM_001367365 325-179 chr15 26285888 26286094 + 2 NA Intergenic L1MA9|LINE|L1 170178 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 271-114 chr13 71554353 71554488 + 2 NA intron (NM_004392, intron 2 of 6) intron (NM_004392, intron 2 of 6) 312772 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 246-302 chr4 102763817 102763992 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -2936 NM_005908 4126 Hs.480415 NM_005908 ENSG00000109323 MANBA MANB1 mannosidase beta protein-coding 457-5 chr1 62002994 62003338 + 2 NA intron (NM_001350145, intron 28 of 43) intron (NM_001350145, intron 28 of 43) -75620 NR_036058 100422902 NR_036058 ENSG00000263908 MIR3116-1 - microRNA 3116-1 ncRNA 534-134 chr2 183752950 183753383 + 2 NA Intergenic Intergenic -625809 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 234-48 chr10 111305585 111305768 + 2 NA Intergenic Intergenic 191385 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 336-109 chr11 99854058 99854314 + 2 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 298041 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 186-49 chr14 58905395 58905567 + 2 NA intron (NR_110547, intron 2 of 5) L1PB4|LINE|L1 77193 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 399-107 chr16 31823413 31823616 + 2 NA Intergenic Intergenic -14661 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 712-64 chr4 65109239 65109855 + 2 NA Intergenic Intergenic -105047 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 374-290 chr5 2195846 2196212 + 2 NA Intergenic Intergenic 116172 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 463-167 chr21 7953940 7954384 + 2 NA Intergenic (CATTC)n|Satellite|Satellite -124530 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 362-470 chr9 137818030 137818283 + 2 NA intron (NM_001354263, intron 25 of 26) intron (NM_001354263, intron 25 of 26) -20263 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 314-326 chr2 234525205 234525491 + 2 NA Intergenic Intergenic -28267 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 348-410 chr5 61964271 61964572 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -228723 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 282-68 chr11 37512936 37513136 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -425565 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 303-504 chrX 46215451 46215739 + 2 NA Intergenic L1MB7|LINE|L1 112079 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 251-388 chr8 67700608 67700815 + 2 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 45649 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 202-60 chr13 112182059 112182233 + 2 NA Intergenic Intergenic -15187 NR_108094 101928698 Hs.528451 NR_108094 LINC01070 - long intergenic non-protein coding RNA 1070 ncRNA 343-520 chr7 107075555 107075821 + 2 NA intron (NM_002736, intron 2 of 10) intron (NM_002736, intron 2 of 10) 30983 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 177-120 chr4 97734098 97734221 + 2 NA intron (NM_174952, intron 9 of 10) L1M3|LINE|L1 367233 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 275-331 chr7 47765343 47765508 + 2 NA intron (NR_038407, intron 2 of 2) LTR39|LTR|ERV1 3949 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 198-153 chr3 4508968 4509132 + 2 NA intron (NM_001168272, intron 2 of 60) intron (NM_001168272, intron 2 of 60) 15702 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 419-256 chr6 129868696 129868931 + 2 NA Intergenic Intergenic -7498 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 328-102 chr12 28843371 28843656 + 2 NA Intergenic L1M4|LINE|L1 -305765 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 412-319 chr7 123161967 123162362 + 2 NA intron (NM_001324400, intron 7 of 17) Charlie7|DNA|hAT-Charlie 37805 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 240-405 chr7 138555856 138556056 + 2 NA intron (NM_015905, intron 9 of 18) intron (NM_015905, intron 9 of 18) 95697 NM_015905 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 235-178 chr2 114381552 114381733 + 2 NA Intergenic Intergenic -60999 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 286-272 chr3 29373710 29373988 + 2 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 92537 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 216-53 chr11 17061736 17061922 + 2 NA Intergenic L1M1|LINE|L1 9943 NR_045002 10819 Hs.523504 NR_045002 ENSG00000184669 OR7E14P OR11-5|OR7E151P olfactory receptor family 7 subfamily E member 14 pseudogene pseudo 326-485 chr7 10463915 10464152 + 2 NA intron (NR_147499, intron 2 of 2) L1ME2|LINE|L1 -238643 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 438-138 chr2 213760180 213760527 + 2 NA intron (NR_047660, intron 9 of 14) L1MB1|LINE|L1 2286 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 337-596 chrX 47921419 47921604 + 2 NA 3' UTR (NM_007137, exon 5 of 5) 3' UTR (NM_007137, exon 5 of 5) 82478 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 321-406 chr4 31754837 31755133 + 2 NA Intergenic Intergenic -242394 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 583-13 chr10 14289860 14290305 + 2 NA intron (NR_134578, intron 2 of 3) L1MB1|LINE|L1 40802 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 330-384 chr4 92830424 92830606 + 2 NA intron (NM_001286838, intron 2 of 14) (TAT)n|Simple_repeat|Simple_repeat 526116 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 356-264 chr2 160763286 160763537 + 2 NA Intergenic Intergenic -269604 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 337-41 chr10 8103862 8104087 + 2 NA Intergenic Intergenic 49286 NM_001002295 2625 Hs.524134 NM_002051 ENSG00000107485 GATA3 HDR|HDRS GATA binding protein 3 protein-coding 262-145 chr15 81521466 81521659 + 2 NA Intergenic Intergenic -147349 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 357-121 chr14 80080961 80081211 + 2 NA Intergenic Intergenic -130333 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 378-296 chr4 13317782 13318101 + 2 NA Intergenic L1MA5|LINE|L1 166399 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 375-154 chr16 48505422 48505650 + 2 NA Intergenic AluSz6|SINE|Alu 104644 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 498-253 chr7 79322820 79323194 + 2 NA intron (NM_001301128, intron 1 of 20) AluJo|SINE|Alu -129950 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 305-39 chr1 193996595 193996824 + 2 NA Intergenic Intergenic 691964 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 616-78 chr2 50949937 50950518 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 81905 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 591-116 chr4 99274165 99274607 + 2 NA intron (NR_037884, intron 4 of 9) intron (NR_037884, intron 4 of 9) 16599 NM_000667 124 Hs.654433 NM_000667 ENSG00000187758 ADH1A ADH1 alcohol dehydrogenase 1A (class I), alpha polypeptide protein-coding 536-97 chr17 73101091 73101410 + 2 NA Intergenic Intergenic -8562 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 457-210 chr5 153820405 153820786 + 2 NA Intergenic MIR3|SINE|MIR 78392 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 695-91 chr6 34724983 34725488 + 2 NA Intergenic FLAM_C|SINE|Alu 28290 NR_134626 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 350-510 chr8 60432546 60432790 + 2 NA Intergenic L1MEd|LINE|L1 -18850 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 199-199 chr5 63248102 63248260 + 2 NA Intergenic Intergenic 669362 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 351-106 chr13 46272744 46272946 + 2 NA intron (NM_001282460, intron 9 of 9) L1ME3Cz|LINE|L1 24999 NR_047493 100861554 Hs.90866 NR_047493 ENSG00000261097 LINC00563 - long intergenic non-protein coding RNA 563 ncRNA 340-417 chr4 112552295 112552498 + 2 NA intron (NM_018392, intron 22 of 27) intron (NM_018392, intron 22 of 27) -36216 NM_024019 63973 Hs.744415 NM_024019 ENSG00000178403 NEUROG2 Atoh4|Math4A|NGN2|bHLHa8|ngn-2 neurogenin 2 protein-coding 463-79 chr13 66005752 66006025 + 2 NA Intergenic Intergenic -39459 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 409-163 chr2 238502552 238502797 + 2 NA Intergenic MIR|SINE|MIR 52825 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 541-14 chr10 31429319 31429661 + 2 NA intron (NM_001323646, intron 4 of 11) L1PA13|LINE|L1 -29735 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 312-277 chr2 233772468 233772708 + 2 NA 3' UTR (NM_001072, exon 5 of 5) 3' UTR (NM_001072, exon 5 of 5) -3136 NM_001367507 339766 Hs.361778 NM_001287395 ENSG00000185038 MROH2A HEATR7B1 maestro heat like repeat family member 2A protein-coding 420-31 chr10 19255669 19255936 + 2 NA intron (NM_001142308, intron 18 of 39) intron (NM_001142308, intron 18 of 39) 207001 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 290-481 chr9 28122782 28122973 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -549011 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 291-431 chr8 40604635 40604820 + 2 NA intron (NM_001135731, intron 4 of 5) L1PB1|LINE|L1 -261364 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 157-90 chr4 65198659 65198810 + 2 NA Intergenic Intergenic -194234 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 305-515 chr7 100016252 100016452 + 2 NA intron (NM_001287055, intron 1 of 3) intron (NM_001287055, intron 1 of 3) 756 NM_001346580 7586 Hs.615360 NM_003439 ENSG00000106261 ZKSCAN1 KOX18|PHZ-37|ZNF139|ZNF36|ZSCAN33 zinc finger with KRAB and SCAN domains 1 protein-coding 202-66 chr14 30712597 30712779 + 2 NA intron (NM_016106, intron 19 of 24) intron (NM_016106, intron 19 of 24) 90369 NM_016106 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 377-207 chr2 104592124 104592361 + 2 NA Intergenic HERVL-int|LTR|ERVL -81733 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 357-55 chr10 133188399 133188581 + 2 NA intron (NM_152643, intron 6 of 29) intron (NM_152643, intron 6 of 29) 28271 NM_001347864 85442 Hs.530685 NM_152643 ENSG00000171798 KNDC1 C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND kinase non-catalytic C-lobe domain containing 1 protein-coding 356-377 chr5 5185825 5186101 + 2 NA intron (NM_139056, intron 4 of 22) intron (NM_139056, intron 4 of 22) 45633 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 171-17 chr10 107779746 107779905 + 2 NA Intergenic Intergenic 289468 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 246-225 chr2 235431254 235431404 + 2 NA Intergenic L1ME3Cz|LINE|L1 -62714 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 255-326 chr5 45374807 45375013 + 2 NA intron (NM_021072, intron 4 of 7) L1P4|LINE|L1 321470 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 151-3 chr1 100740460 100740593 + 2 NA Intergenic L1ME3D|LINE|L1 20784 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 395-254 chr4 99696224 99696488 + 2 NA Intergenic Intergenic -41677 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 215-76 chr14 33795110 33795296 + 2 NA intron (NM_001165893, intron 9 of 10) intron (NM_001165893, intron 9 of 10) 86266 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 538-68 chr14 56944247 56944705 + 2 NA Intergenic L2b|LINE|L2 131318 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 119-44 chr3 59718842 59718927 + 2 NA Intergenic Intergenic -60387 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 264-111 chr13 64358955 64359125 + 2 NA Intergenic Intergenic -283029 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 513-243 chr6 54071540 54071796 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -24074 NR_046710 100873951 NR_046710 MLIP-AS1 - MLIP antisense RNA 1 ncRNA 400-265 chr4 138815248 138815541 + 2 NA Intergenic Intergenic 197252 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 219-208 chr20 42381694 42381823 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -303725 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 222-299 chr5 87557187 87557353 + 2 NA Intergenic Intergenic -104772 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 253-372 chr7 3334829 3335006 + 2 NA intron (NM_152744, intron 1 of 44) L2a|LINE|L2 33665 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 310-263 chr2 148286982 148287183 + 2 NA intron (NM_018328, intron 4 of 14) Tigger18a|DNA|TcMar-Tigger -265478 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 525-264 chr8 109140130 109140464 + 2 NA Intergenic Intergenic 53669 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 228-242 chr4 57505486 57505688 + 2 NA Intergenic Intergenic 79715 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 602-93 chr4 60922297 60922753 + 2 NA promoter-TSS (NR_039652) promoter-TSS (NR_039652) -94 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 348-517 chr8 72797888 72798205 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 66001 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 395-133 chr17 27230599 27230968 + 2 NA Intergenic Intergenic 63213 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 354-214 chr2 77825373 77825591 + 2 NA intron (NR_110288, intron 3 of 3) L1MA2|LINE|L1 -90452 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 212-223 chr3 138571554 138571760 + 2 NA intron (NM_001288965, intron 2 of 16) intron (NM_001288965, intron 2 of 16) 20299 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 459-74 chr14 24943878 24944277 + 2 NA intron (NM_001351943, intron 3 of 6) intron (NM_001351943, intron 3 of 6) 104923 NM_001304477 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 244-210 chr22 26157450 26157587 + 2 NA Intergenic MIRb|SINE|MIR -11944 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 570-112 chr2 151704821 151705350 + 2 NA intron (NM_001271208, intron 13 of 182) intron (NM_001271208, intron 13 of 182) 29391 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 225-164 chr2 125834964 125835115 + 2 NA Intergenic MER4D|LTR|ERV1 282946 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 142-24 chr14 66279837 66279937 + 2 NA Intergenic MIRb|SINE|MIR -206484 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 758-16 chr11 78375545 78376086 + 2 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) -33935 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 488-39 chr10 127641588 127641990 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie 92440 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 326-357 chr3 150354382 150354633 + 2 NA Intergenic Intergenic -30760 NR_110187 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 401-199 chr3 9176158 9176365 + 2 NA intron (NM_014850, intron 1 of 21) MIR|SINE|MIR -16232 NR_121664 101927416 Hs.475364 NR_121663 ENSG00000228723 SRGAP3-AS2 - SRGAP3 antisense RNA 2 ncRNA 271-116 chr13 80770992 80771221 + 2 NA Intergenic Intergenic -247285 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 211-272 chr7 29151218 29151401 + 2 NA intron (NM_001293069, intron 2 of 13) intron (NM_001293069, intron 2 of 13) 4762 NM_001293069 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 193-98 chr2 40603347 40603508 + 2 NA Intergenic MER91B|DNA|hAT-Tip100 -90992 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 207-35 chr10 48630017 48630194 + 2 NA intron (NM_001347738, intron 2 of 10) AluSc|SINE|Alu 22397 NM_001256025 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 298-322 chr4 55525975 55526235 + 2 NA intron (NM_004898, intron 1 of 22) Tigger4a|DNA|TcMar-Tigger 19827 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 499-266 chr8 94307300 94307657 + 2 NA Intergenic Intergenic -45159 NM_005261 2669 Hs.654463 NM_005261 ENSG00000164949 GEM KIR GTP binding protein overexpressed in skeletal muscle protein-coding 167-109 chr7 97272089 97272187 + 2 NA Intergenic Intergenic 155545 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 532-214 chr5 162364854 162365267 + 2 NA Intergenic Intergenic 297418 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 374-66 chr12 34580241 34580514 + 2 NA Intergenic ALR/Alpha|Satellite|centr 557881 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 392-233 chr4 90898926 90899180 + 2 NA intron (NM_001145065, intron 8 of 10) L1PA17|LINE|L1 664022 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 461-69 chr12 130645748 130646056 + 2 NA intron (NM_001351226, intron 1 of 21) intron (NM_001351226, intron 1 of 21) -11982 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 449-119 chr2 58411918 58412214 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -108687 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 447-267 chr8 85321252 85321531 + 2 NA Intergenic Intergenic 20323 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 667-26 chr12 133033385 133033900 + 2 NA intron (NR_110091, intron 2 of 2) intron (NR_110091, intron 2 of 2) 3580 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 528-59 chr12 43085944 43086296 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -69195 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 287-79 chr11 12395887 12396084 + 2 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 18414 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 217-313 chr5 146890093 146890276 + 2 NA intron (NM_001271900, intron 2 of 10) intron (NM_001271900, intron 2 of 10) -11257 NR_073527 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 284-399 chr8 35238575 35238794 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 3209 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 350-566 chrX 48053234 48053580 + 2 NA Intergenic Intergenic -2903 NR_046742 100874120 Hs.618606 NR_046742 ZNF630-AS1 - ZNF630 antisense RNA 1 ncRNA 243-290 chr3 96844380 96844555 + 2 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 29873 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 268-340 chr6 56722629 56722881 + 2 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -79866 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 288-474 chr9 105590454 105590619 + 2 NA intron (NM_001351502, intron 5 of 13) L2a|LINE|L2 32405 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 157-79 chr22 49696566 49696665 + 2 NA Intergenic L1MEd|LINE|L1 -39096 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 495-88 chr17 67255891 67256261 + 2 NA intron (NR_136398, intron 1 of 3) L1ME3A|LINE|L1 -10880 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 480-267 chr6 168154710 168155111 + 2 NA Intergenic Intergenic 71607 NR_134590 105378137 Hs.549668 NR_134590 ENSG00000237987 LOC105378137 - uncharacterized LOC105378137 ncRNA 208-167 chr3 70710259 70710422 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 354584 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 375-467 chrX 88621146 88621423 + 2 NA Intergenic L1M3|LINE|L1 -125941 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 264-285 chr3 181924381 181924580 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -27884 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 163-24 chr11 33572497 33572654 + 2 NA intron (NM_012194, intron 9 of 20) L1ME2z|LINE|L1 128165 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 328-183 chr15 87951144 87951384 + 2 NA intron (NM_001320135, intron 12 of 15) intron (NM_001320135, intron 12 of 15) -4996 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 354-257 chr20 20134571 20134874 + 2 NA intron (NM_015585, intron 8 of 26) L2c|LINE|L2 78076 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 327-91 chr11 71210013 71210184 + 2 NA intron (NM_012309, intron 1 of 24) intron (NM_012309, intron 1 of 24) 14698 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 263-203 chr2 79440900 79441156 + 2 NA Intergenic Intergenic 59816 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 317-271 chr20 8716027 8716261 + 2 NA intron (NM_182734, intron 12 of 32) intron (NM_182734, intron 12 of 32) -115041 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 280-91 chr12 58209005 58209195 + 2 NA Intergenic MamRep4096|DNA|hAT-Tip100 121208 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 309-49 chr10 44414092 44414294 + 2 NA Intergenic L1PA15|LINE|L1 -29096 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 420-119 chr19 56450914 56451216 + 2 NA intron (NM_001321355, intron 4 of 5) L1MA5|LINE|L1 26280 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 212-19 chr1 192223530 192223693 + 2 NA Intergenic Intergenic 65149 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 364-396 chr6 151211101 151211437 + 2 NA intron (NR_125868, intron 1 of 2) L1MA4A|LINE|L1 17188 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 840-43 chr6 69385614 69386084 + 2 NA intron (NM_001704, intron 31 of 31) intron (NM_001704, intron 31 of 31) 410617 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 300-341 chr4 163704483 163704684 + 2 NA intron (NM_001166373, intron 3 of 7) L1ME3G|LINE|L1 -91049 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 353-179 chr16 72708636 72708982 + 2 NA Intergenic Intergenic -43839 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 162-18 chr10 66550152 66550286 + 2 NA intron (NM_001127384, intron 10 of 17) L1ME3B|LINE|L1 -375817 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 281-329 chr4 133707686 133707950 + 2 NA Intergenic L1MB4|LINE|L1 493971 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 282-389 chr5 124037927 124038170 + 2 NA Intergenic Intergenic 400472 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 353-481 chr7 32001554 32001894 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 68683 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 384-124 chr15 79877902 79878137 + 2 NA intron (NR_037654, intron 2 of 2) L1M4a1|LINE|L1 18978 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 354-420 chr7 9856635 9856949 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 222522 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 310-368 chr4 64056210 64056498 + 2 NA Intergenic L1PA16|LINE|L1 353096 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 371-84 chr12 73233165 73233399 + 2 NA Intergenic L1MA5|LINE|L1 74092 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 238-375 chr8 50238994 50239191 + 2 NA intron (NR_135797, intron 2 of 20) L1PREC2|LINE|L1 74961 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 540-128 chr20 7395019 7395423 + 2 NA Intergenic L1MC4|LINE|L1 23613 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 575-132 chr4 7603250 7603570 + 2 NA intron (NM_020777, intron 3 of 26) L1MEd|LINE|L1 143382 NR_036238 100422826 NR_036238 ENSG00000266690 MIR4274 - microRNA 4274 ncRNA 753-5 chr10 9747725 9748428 + 2 NA Intergenic Intergenic -310646 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 362-234 chr2 158325204 158325459 + 2 NA intron (NM_138803, intron 7 of 13) L2a|LINE|L2 131422 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 266-319 chr5 29330863 29331019 + 2 NA Intergenic L2a|LINE|L2 65035 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 351-332 chr4 19957275 19957554 + 2 NA Intergenic L1PB4|LINE|L1 -294491 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 195-90 chr18 6130814 6130961 + 2 NA intron (NM_001365769, intron 14 of 16) intron (NM_001365769, intron 14 of 16) -125857 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 366-299 chr4 24930059 24930266 + 2 NA intron (NM_173463, intron 1 of 12) MLT1J1|LTR|ERVL-MaLR -17184 NM_001130726 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 484-97 chr17 63059588 63060054 + 2 NA intron (NM_025185, intron 2 of 25) HAL1M8|LINE|L1 93586 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 182 chr1 38653659 38653817 + 2 NA Intergenic Intergenic 178542 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 295-422 chr6 164258824 164258988 + 2 NA Intergenic Intergenic 563157 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 354-262 chr20 41820571 41820784 + 2 NA Intergenic L3|LINE|CR1 -202300 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 517-134 chr2 102947887 102948248 + 2 NA Intergenic Intergenic 36362 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 284-385 chr7 92820666 92820928 + 2 NA intron (NM_001259, intron 2 of 7) HAL1ME|LINE|L1 13162 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 313-138 chr14 41355650 41355889 + 2 NA Intergenic Intergenic -251087 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 573-84 chr18 68368201 68368623 + 2 NA Intergenic MER3|DNA|hAT-Charlie 346696 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 384-354 chr7 105696686 105696946 + 2 NA intron (NM_020725, intron 3 of 11) MER11C|LTR|ERVK -17654 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 315-306 chr3 29216056 29216338 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 64742 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 163-70 chr2 183925232 183925367 + 2 NA Intergenic L1ME1|LINE|L1 -453676 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 253-240 chr22 34860648 34860821 + 2 NA intron (NR_138042, intron 3 of 4) MIR3|SINE|MIR 137182 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 238-214 chr21 20404208 20404356 + 2 NA Intergenic Intergenic -145597 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 336-455 chr5 83297661 83297899 + 2 NA intron (NM_022550, intron 7 of 7) intron (NM_022550, intron 7 of 7) -173894 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 521-272 chrX 20924644 20925023 + 2 NA Intergenic L1M4|LINE|L1 -449585 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 283-197 chr18 44414835 44415086 + 2 NA intron (NR_110792, intron 2 of 4) L1PA8A|LINE|L1 116737 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 222-240 chr3 85035939 85036135 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 26227 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 221-276 chr7 35318479 35318645 + 2 NA intron (NR_038864, intron 1 of 2) L2c|LINE|L2 4707 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 358-337 chr4 84447737 84447996 + 2 NA Intergenic Intergenic 50368 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 272-118 chr14 69095801 69095975 + 2 NA intron (NM_003861, intron 5 of 8) intron (NM_003861, intron 5 of 8) 56711 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 210-308 chr9 27669074 27669249 + 2 NA Intergenic Intergenic -95295 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 355-21 chr1 194254994 194255180 + 2 NA Intergenic Intergenic 950342 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 286-296 chr3 145346987 145347229 + 2 NA Intergenic Intergenic 722077 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 369-27 chr10 11334612 11334908 + 2 NA 3' UTR (NM_006561, exon 14 of 14) 3' UTR (NM_006561, exon 14 of 14) 9914 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 246-191 chr2 51252546 51252735 + 2 NA intron (NR_135237, intron 2 of 10) L1MA4A|LINE|L1 220039 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 334-396 chr4 126869496 126869705 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -763357 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 254-189 chr2 100201685 100201842 + 2 NA Intergenic MER74A|LTR|ERVL -6491 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 330-550 chr9 28130868 28131185 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -557160 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 181-41 chr14 56010193 56010311 + 2 NA Intergenic AluJb|SINE|Alu -108159 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 298-65 chr10 130598947 130599128 + 2 NA Intergenic L1ME1|LINE|L1 363631 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 295-90 chr12 14055529 14055748 + 2 NA Intergenic Intergenic -75282 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 386-212 chr20 61386376 61386719 + 2 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -112874 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 258-260 chr3 79072726 79072921 + 2 NA intron (NM_002941, intron 3 of 30) intron (NM_002941, intron 3 of 30) -53364 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 503-109 chr15 95153558 95153917 + 2 NA Intergenic Intergenic 173363 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 190-188 chr8 137722580 137722722 + 2 NA Intergenic L1MB7|LINE|L1 -309063 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 411-163 chr20 52414320 52414690 + 2 NA Intergenic MIR|SINE|MIR -206333 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 274-300 chr5 5106481 5106678 + 2 NA Intergenic Intergenic -28268 NR_134266 105374631 Hs.570964 NR_134266 ENSG00000250529 LINC02121 - long intergenic non-protein coding RNA 2121 ncRNA 353-101 chr12 16093576 16093777 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 182344 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 338-608 chrX 138652422 138652679 + 2 NA intron (NM_033642, intron 3 of 4) intron (NM_033642, intron 3 of 4) 15243 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 374-254 chr3 105489504 105489703 + 2 NA intron (NM_001243280, intron 1 of 14) Tigger15a|DNA|TcMar-Tigger 122694 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 208-125 chr2 115116966 115117139 + 2 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 44291 NR_036580 389023 Hs.97540 NR_036580 ENSG00000235026 DPP10-AS1 - DPP10 antisense RNA 1 ncRNA 246-438 chrX 34133213 34133378 + 2 NA promoter-TSS (NM_203408) promoter-TSS (NM_203408) -965 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 194-69 chr16 13105116 13105291 + 2 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 203605 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 207-41 chr10 84213684 84213837 + 2 NA intron (NM_001171971, intron 16 of 16) intron (NM_001171971, intron 16 of 16) 11784 NM_001017924 340745 Hs.450425 NM_001017924 ENSG00000204033 LRIT2 LRRC22 leucine rich repeat, Ig-like and transmembrane domains 2 protein-coding 537-104 chr2 22560984 22561378 + 2 NA Intergenic AluJb|SINE|Alu 24702 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 282-455 chr8 102194878 102195033 + 2 NA Intergenic Intergenic 43876 NM_001172477 50484 Hs.512592 NM_015713 ENSG00000048392 RRM2B MTDPS8A|MTDPS8B|P53R2 ribonucleotide reductase regulatory TP53 inducible subunit M2B protein-coding 296-380 chr5 113868613 113868891 + 2 NA Intergenic L2b|LINE|L2 355058 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 538-116 chr2 113948482 113948971 + 2 NA intron (NM_005721, intron 8 of 11) HAL1|LINE|L1 -20596 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 115-15 chr15 86779509 86779603 + 2 NA intron (NM_152336, intron 23 of 24) L1MEi|LINE|L1 -153324 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 113-5 chr1 195870393 195870462 + 2 NA Intergenic HAL1ME|LINE|L1 218288 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 136-10 chr10 75705619 75705725 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -6783 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 355-305 chr22 34698013 34698293 + 2 NA Intergenic Intergenic 299763 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 283-171 chr16 80578043 80578255 + 2 NA Intergenic Intergenic -5341 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 597-125 chr7 34888277 34888866 + 2 NA Intergenic L2a|LINE|L2 52263 NR_031666 100302152 NR_031666 ENSG00000221669 MIR548N MIRN548N|hsa-mir-548n microRNA 548n ncRNA 425-323 chr9 34818853 34819235 + 2 NA Intergenic L1MC|LINE|L1 19542 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 205-244 chr6 99549644 99549795 + 2 NA intron (NM_001363537, intron 8 of 12) intron (NM_001363537, intron 8 of 12) 18941 NM_005190 892 Hs.430646 NM_005190 ENSG00000112237 CCNC CycC|SRB11|hSRB11 cyclin C protein-coding 437-50 chr12 26317798 26318112 + 2 NA Intergenic Intergenic 122382 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 308-502 chr8 104570480 104570716 + 2 NA intron (NM_013437, intron 1 of 6) L1ME1|LINE|L1 18426 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 515-185 chr4 88914380 88914771 + 2 NA intron (NM_014883, intron 5 of 23) L2c|LINE|L2 -91214 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 509-88 chr17 3369784 3370244 + 2 NA Intergenic AluJb|SINE|Alu 28396 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 314-370 chr3 35047238 35047457 + 2 NA intron (NR_110817, intron 2 of 3) L1ME3D|LINE|L1 346676 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 585-114 chr4 104896002 104896466 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -249641 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 304-124 chr12 118912344 118912591 + 2 NA Intergenic L2b|LINE|L2 -69074 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 424-150 chr2 203758011 203758346 + 2 NA Intergenic L1MA3|LINE|L1 51539 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 458-15 chr1 240437678 240438044 + 2 NA intron (NM_020066, intron 15 of 17) intron (NM_020066, intron 15 of 17) 174294 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 611-22 chr11 40563827 40564370 + 2 NA intron (NM_020929, intron 2 of 4) ERV3-16A3_I-int|LTR|ERVL -270968 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 294-509 chr9 138124415 138124598 + 2 NA 3' UTR (NM_000718, exon 46 of 46) 3' UTR (NM_000718, exon 46 of 46) -25607 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 378-128 chr14 25540421 25540720 + 2 NA Intergenic L2c|LINE|L2 -490273 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 293-86 chr12 65227483 65227692 + 2 NA intron (NM_014319, intron 4 of 12) MER2|DNA|TcMar-Tigger -51096 NM_001031679 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 263-87 chr12 94596716 94596935 + 2 NA intron (NM_020698, intron 1 of 3) intron (NM_020698, intron 1 of 3) 19176 NM_001301036 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 441-134 chr2 163417032 163417335 + 2 NA Intergenic L1M3|LINE|L1 318825 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 453-140 chr20 10892186 10892508 + 2 NA intron (NR_109866, intron 5 of 6) MIR|SINE|MIR 16925 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 322-258 chr2 112202053 112202351 + 2 NA Intergenic Intergenic 52840 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 297-487 chr8 111825548 111825743 + 2 NA Intergenic LTR26D|LTR|ERV1 449006 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 419-301 chr8 121880373 121880615 + 2 NA Intergenic CR1-3_Croc|LINE|CR1 -239054 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 322-136 chr12 128348096 128348287 + 2 NA intron (NM_001136103, intron 1 of 8) L1MB7|LINE|L1 54099 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 424-257 chr7 42781073 42781345 + 2 NA Intergenic Intergenic -74762 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 296-335 chr4 48622866 48623021 + 2 NA intron (NM_015030, intron 5 of 63) intron (NM_015030, intron 5 of 63) 132691 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 339-161 chr14 58944602 58944823 + 2 NA intron (NR_110547, intron 3 of 5) intron (NR_110547, intron 3 of 5) 116424 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 253-196 chr2 118557741 118557948 + 2 NA Intergenic Intergenic 45122 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 286-112 chr14 41514526 41514745 + 2 NA Intergenic Intergenic -92221 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 422-141 chr2 24128765 24129152 + 2 NA intron (NM_001145710, intron 2 of 10) L1MEc|LINE|L1 5489 NM_001145710 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 1062-10 chr20 14532852 14533710 + 2 NA intron (NM_001351663, intron 4 of 17) LTR54B|LTR|ERV1 -21103 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 266-336 chr5 85377768 85377975 + 2 NA Intergenic L1MA4|LINE|L1 -904573 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 152-70 chr4 33475701 33475820 + 2 NA Intergenic Intergenic 564133 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 280-353 chr6 76327801 76328014 + 2 NA Intergenic Intergenic -255229 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 364-121 chr14 28823745 28824035 + 2 NA Intergenic LTR49-int|LTR|ERV1 -38103 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 288-313 chr5 11098180 11098337 + 2 NA intron (NM_001364128, intron 12 of 19) intron (NM_001364128, intron 12 of 19) -337024 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 207-142 chr2 66970826 66970986 + 2 NA intron (NR_110169, intron 4 of 4) (TA)n|Simple_repeat|Simple_repeat -48416 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 352-89 chr11 127758595 127758791 + 2 NA Intergenic L1PB|LINE|L1 -450073 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 343-294 chr20 12857188 12857504 + 2 NA Intergenic L1MD1|LINE|L1 79617 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 316-180 chr15 37335132 37335361 + 2 NA Intergenic Intergenic -233935 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 135-75 chrX 18124943 18125030 + 2 NA Intergenic Intergenic -20342 NR_133641 105373144 NR_133641 ENSG00000225882 LINC01456 - long intergenic non-protein coding RNA 1456 ncRNA 285-432 chr8 127606094 127606264 + 2 NA Intergenic MER21-int|LTR|ERVL -124040 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 246-320 chr5 28755595 28755734 + 2 NA Intergenic L2a|LINE|L2 -171206 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 234-96 chr14 56667119 56667267 + 2 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat 87395 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 336-467 chr5 133366253 133366500 + 2 NA intron (NM_015082, intron 4 of 15) L2a|LINE|L2 61330 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 344-29 chr1 187624564 187624824 + 2 NA Intergenic Intergenic 181066 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 529-217 chr8 105569031 105569522 + 2 NA intron (NM_001362837, intron 4 of 7) L2c|LINE|L2 249733 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 429-108 chr16 31790993 31791361 + 2 NA Intergenic Intergenic 17676 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 814-3 chr1 213536795 213537426 + 2 NA Intergenic LTR32|LTR|ERVL -387639 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 425-137 chr2 63297030 63297353 + 2 NA intron (NR_148704, intron 14 of 18) LTR32|LTR|ERVL 140816 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 421-107 chr17 58064926 58065317 + 2 NA Intergenic Intergenic 18083 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 232-395 chr9 27217356 27217513 + 2 NA intron (NM_001290077, intron 17 of 21) intron (NM_001290077, intron 17 of 21) 65359 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 289-113 chr12 83498510 83498706 + 2 NA Intergenic Intergenic 811453 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 390-71 chr12 34677614 34677825 + 2 NA Intergenic ALR/Alpha|Satellite|centr 655223 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 608 chr1 6854038 6854597 + 2 NA intron (NM_001349608, intron 2 of 21) Tigger3a|DNA|TcMar-Tigger 68863 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 583-15 chr10 30742998 30743533 + 2 NA Intergenic Intergenic 20046 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 383-358 chr7 52958882 52959134 + 2 NA Intergenic Intergenic -76625 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 304-504 chr8 55564488 55564679 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -43605 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 284-352 chr6 77760218 77760446 + 2 NA intron (NM_001282136, intron 2 of 4) intron (NM_001282136, intron 2 of 4) 107293 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 252-284 chr3 187657662 187657845 + 2 NA Intergenic L1MCb|LINE|L1 12641 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 229-295 chr5 30725432 30725605 + 2 NA Intergenic L1MC3|LINE|L1 -468168 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 227-369 chr8 63146436 63146650 + 2 NA Intergenic HERVH48-int|LTR|ERV1 21899 NR_102684 101410533 Hs.163027 NR_102684 ENSG00000270673 YTHDF3-AS1 - YTHDF3 antisense RNA 1 (head to head) ncRNA 527-44 chr11 38522416 38522929 + 2 NA Intergenic (ATATACA)n|Simple_repeat|Simple_repeat 123684 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 450-146 chr2 118521210 118521517 + 2 NA Intergenic Intergenic 81603 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 299-107 chr12 86058918 86059153 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) 184740 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 360-70 chr11 110880545 110880835 + 2 NA Intergenic MIR3|SINE|MIR -167501 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 355-139 chr12 133187219 133187446 + 2 NA intron (NM_001165884, intron 2 of 2) L1M8|LINE|L1 5837 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 663-124 chr9 137773444 137773860 + 2 NA intron (NM_001354263, intron 10 of 26) intron (NM_001354263, intron 10 of 26) 14754 NR_147508 651337 Hs.603195 NR_147508 ENSG00000255585 LOC651337 - uncharacterized LOC651337 ncRNA 317-10 chr1 60272286 60272528 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -198637 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 491-102 chr18 50629839 50630281 + 2 NA intron (NM_001292039, intron 1 of 4) intron (NM_001292039, intron 1 of 4) 69973 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 334-573 chr9 99167429 99167685 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 54385 NR_024532 85365 Hs.40919 NM_033087 ENSG00000119523 ALG2 CDG1I|CDGIi|CMS14|CMSTA3|NET38|hALPG2 ALG2 alpha-1,3/1,6-mannosyltransferase protein-coding 452-146 chr2 193280068 193280428 + 2 NA Intergenic L1ME3A|LINE|L1 530403 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 252-306 chr4 117505495 117505663 + 2 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 77181 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 475-28 chr10 72415985 72416376 + 2 NA intron (NM_001195519, intron 4 of 6) intron (NM_001195519, intron 4 of 6) -61261 NM_001365080 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 371-145 chr17 71303494 71303685 + 2 NA Intergenic Intergenic -101410 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 670-126 chr8 126417704 126418197 + 2 NA Intergenic Intergenic 92455 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 369-285 chr4 33503323 33503656 + 2 NA Intergenic L1PB1|LINE|L1 536404 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 775-23 chr12 41413411 41414024 + 2 NA intron (NM_001164595, intron 3 of 9) L1PA15-16|LINE|L1 -24022 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 611-38 chr14 38432215 38432624 + 2 NA Intergenic Intergenic -176326 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 262-71 chr11 23105404 23105600 + 2 NA Intergenic MLT2F|LTR|ERVL -245028 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 540-123 chr2 175612719 175613175 + 2 NA Intergenic AluY|SINE|Alu 389320 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 357-456 chr8 125563871 125564196 + 2 NA Intergenic Intergenic 131824 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 148-30 chr15 33573027 33573117 + 2 NA intron (NM_001243996, intron 12 of 102) L1MB4|LINE|L1 262105 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 332-535 chr8 98811573 98811768 + 2 NA intron (NM_001256312, intron 3 of 12) intron (NM_001256312, intron 3 of 12) 14001 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 454-254 chr5 30232118 30232410 + 2 NA Intergenic Intergenic 351704 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 561-73 chr15 81435537 81436035 + 2 NA intron (NR_120365, intron 6 of 6) intron (NR_120365, intron 6 of 6) -61573 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 269-356 chr6 118759307 118759512 + 2 NA Intergenic L1ME3Cz|LINE|L1 -23299 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 365-293 chr4 72038405 72038731 + 2 NA promoter-TSS (NM_001144756) promoter-TSS (NM_001144756) -564 NM_053036 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 187-69 chr17 69807592 69807742 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -154040 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 199-148 chr21 23656466 23656645 + 2 NA Intergenic Intergenic -271720 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 211-84 chr14 47794649 47794806 + 2 NA intron (NR_039996, intron 1 of 2) L1MEf|LINE|L1 287 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 449-67 chr13 62829560 62829950 + 2 NA Intergenic Intergenic -22396 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 324 chr1 11504523 11504824 + 2 NA intron (NM_020780, intron 3 of 20) MSTB2|LTR|ERVL-MaLR 25518 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 545-100 chr19 27689458 27689835 + 2 NA Intergenic HSAT4|Satellite|centr -103785 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 466-132 chr2 104552822 104553218 + 2 NA Intergenic Intergenic -42511 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 235-90 chr12 112365956 112366143 + 2 NA intron (NM_001109662, intron 1 of 75) AluJb|SINE|Alu 16382 NM_001109662 283450 Hs.530943 NM_173813 ENSG00000173064 HECTD4 C12ord51|C12orf51|HEEL|POTAGE HECT domain E3 ubiquitin protein ligase 4 protein-coding 497-234 chr5 109478478 109478864 + 2 NA Intergenic L1M5|LINE|L1 -68697 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 380-390 chr8 59820448 59820670 + 2 NA Intergenic Intergenic 460841 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 300-436 chr7 72124870 72125096 + 2 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 212408 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 560-18 chr10 57993608 57993997 + 2 NA Intergenic Intergenic 274092 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 283-373 chr5 101416100 101416345 + 2 NA Intergenic Intergenic -512940 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 229-230 chr20 55172972 55173168 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -249973 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 436-187 chr3 98394080 98394462 + 2 NA Intergenic AluJo|SINE|Alu 3605 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 201-110 chr2 4495669 4495846 + 2 NA Intergenic L1MB3|LINE|L1 160465 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 427-63 chr13 74173542 74173883 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -39783 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 367-454 chr8 86964732 86965093 + 2 NA intron (NM_173538, intron 4 of 10) MER52-int|LTR|ERV1 98497 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 351-8 chr1 87560308 87560554 + 2 NA Intergenic Intergenic -188776 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 200-22 chr1 228549310 228549498 + 2 NA Intergenic HSAT4|Satellite|centr -37116 NM_001287262 100129094 Hs.730208 NM_001287262 BTNL10 BTN4|BUTR1 butyrophilin like 10 protein-coding 318-252 chr2 34027856 34028057 + 2 NA intron (NR_126403, intron 4 of 5) MLT1E2|LTR|ERVL-MaLR -39270 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 286-279 chr3 62745469 62745625 + 2 NA intron (NM_003716, intron 3 of 29) intron (NM_003716, intron 3 of 29) 129869 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 219-62 chr11 128565131 128565287 + 2 NA intron (NM_001143820, intron 2 of 9) MLT1A1|LTR|ERVL-MaLR 22349 NM_001143820 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 366-427 chr8 30360838 30361099 + 2 NA Intergenic Intergenic -23533 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 370-139 chr14 40081543 40081795 + 2 NA Intergenic L1PA11|LINE|L1 -649169 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 642-87 chr5 2922691 2923313 + 2 NA Intergenic Intergenic 5148 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 276-186 chr17 14851614 14851789 + 2 NA Intergenic MIRb|SINE|MIR -163104 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 476-205 chr5 3897035 3897321 + 2 NA Intergenic L1MCa|LINE|L1 301346 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 311-548 chr9 98631608 98631854 + 2 NA intron (NM_005458, intron 1 of 18) intron (NM_005458, intron 1 of 18) 77204 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 271-144 chr14 86680252 86680472 + 2 NA Intergenic L1MD1|LINE|L1 -225416 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 181-69 chr2 108118774 108118941 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -66102 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 365-107 chr13 28367379 28367702 + 2 NA TTS (NM_001160030) TTS (NM_001160030) 127588 NM_002019 2321 Hs.594454 NM_002019 ENSG00000102755 FLT1 FLT|FLT-1|VEGFR-1|VEGFR1 fms related tyrosine kinase 1 protein-coding 389-91 chr12 130675907 130676226 + 2 NA intron (NM_001351226, intron 1 of 21) MLT1A0|LTR|ERVL-MaLR 40233 NM_001351226 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 229-58 chr11 18976674 18976885 + 2 NA Intergenic Intergenic -41777 NM_147199 259249 Hs.711459 NM_147199 ENSG00000170255 MRGPRX1 GPCR|MGRG2|MRGX1|SNSR4 MAS related GPR family member X1 protein-coding 299-420 chr7 52991418 52991667 + 2 NA Intergenic Intergenic -44091 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 401-166 chr2 115389303 115389553 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 45613 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 145-21 chr12 71526971 71527089 + 2 NA intron (NR_110596, intron 3 of 19) intron (NR_110596, intron 3 of 19) 87232 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 480-268 chr7 5732728 5732986 + 2 NA intron (NM_207111, intron 5 of 16) intron (NM_207111, intron 5 of 16) -20947 NR_106934 102466203 NR_106934 ENSG00000283419 MIR6874 hsa-mir-6874 microRNA 6874 ncRNA 331-285 chr2 133000533 133000756 + 2 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 85087 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 417-296 chr8 140990843 140991166 + 2 NA intron (NM_001352737, intron 1 of 32) intron (NM_001352737, intron 1 of 32) 10000 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 325-243 chr18 74400447 74400684 + 2 NA Intergenic Intergenic -8883 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 481-127 chr19 24368614 24368968 + 2 NA Intergenic ALR/Alpha|Satellite|centr -205344 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 411-255 chr6 88733728 88734041 + 2 NA intron (NM_001286428, intron 11 of 13) L1MCa|LINE|L1 -194515 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 278-137 chr15 97511003 97511188 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 10716 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 191-140 chr3 132099430 132099566 + 2 NA Intergenic L1MD|LINE|L1 -59892 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 563-62 chr16 61629992 61630519 + 2 NA Intergenic Intergenic 406183 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 306-560 chrX 76606452 76606643 + 2 NA Intergenic L1MA1|LINE|L1 178837 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 229-142 chr17 6020061 6020229 + 2 NA Intergenic Intergenic -50469 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 351-175 chr17 60917958 60918301 + 2 NA intron (NM_001330413, intron 12 of 25) L1MB4|LINE|L1 240278 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 363-394 chr6 123111080 123111393 + 2 NA Intergenic Intergenic 115001 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 276-81 chr11 58488105 58488323 + 2 NA Intergenic L1MB7|LINE|L1 19891 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 323-113 chr12 46990713 46990903 + 2 NA Intergenic L1PA16|LINE|L1 -88795 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 531-180 chr4 70400457 70400889 + 2 NA intron (NM_001302807, intron 3 of 3) intron (NM_001302807, intron 3 of 3) 2733 NM_001302807 58503 Hs.661425 NM_021225 ENSG00000171199 OPRPN BPLP|PRL1|PROL1|opiorphin opiorphin prepropeptide protein-coding 312-72 chr11 13057975 13058175 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 48759 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 194-13 chr1 114231736 114231895 + 2 NA Intergenic AluJo|SINE|Alu -77946 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 219-300 chr5 157351324 157351539 + 2 NA intron (NM_001037333, intron 23 of 30) intron (NM_001037333, intron 23 of 30) -5754 NM_001001343 408263 Hs.437066 NM_001001343 ENSG00000172568 FNDC9 C5orf40 fibronectin type III domain containing 9 protein-coding 362-237 chr2 170916785 170917133 + 2 NA Intergenic LTR26B|LTR|ERV1 -11518 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 173-138 chr8 68427101 68427196 + 2 NA intron (NR_146187, intron 1 of 13) L1MD2|LINE|L1 -95657 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 287-120 chr12 133163394 133163638 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -17979 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 329-137 chr13 24493432 24493672 + 2 NA intron (NM_006437, intron 8 of 33) intron (NM_006437, intron 8 of 33) 19226 NM_006437 143 Hs.744855 NM_006437 ENSG00000102699 PARP4 ADPRTL1|ARTD4|PARP-4|PARPL|PH5P|VAULT3|VPARP|VWA5C|p193 poly(ADP-ribose) polymerase family member 4 protein-coding 298-45 chr10 54990644 54990821 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -189441 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 345-17 chr1 112176915 112177115 + 2 NA Intergenic Intergenic 186479 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 240-277 chr22 45053325 45053513 + 2 NA Intergenic MER4C|LTR|ERV1 -43414 NM_001135862 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 252-391 chr7 19956469 19956654 + 2 NA intron (NR_110114, intron 5 of 5) MSTA|LTR|ERVL-MaLR -182944 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 320-27 chr1 176638129 176638295 + 2 NA intron (NM_021936, intron 3 of 4) MER94B|DNA|hAT-Blackjack 175037 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 498-122 chr2 78026439 78026783 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -62119 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 228-367 chr9 28522660 28522835 + 2 NA intron (NM_152570, intron 2 of 6) L1M7|LINE|L1 196558 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 588-91 chr21 30898134 30898590 + 2 NA Intergenic L1M6|LINE|L1 -16782 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 203-104 chr2 17560570 17560746 + 2 NA intron (NM_001366806, intron 1 of 3) L1M5|LINE|L1 19962 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 219-306 chr6 39595946 39596114 + 2 NA intron (NM_001289020, intron 7 of 21) intron (NM_001289020, intron 7 of 21) 129378 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 393-96 chr14 52447606 52447923 + 2 NA intron (NM_001160047, intron 18 of 20) L1MA3|LINE|L1 104741 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 307-430 chr6 108710300 108710554 + 2 NA Intergenic Intergenic -41227 NR_033376 387111 Hs.520310 NR_033376 ENSG00000203801 LINC00222 C6orf181|NCRNA00222|dJ354J5.2 long intergenic non-protein coding RNA 222 ncRNA 255-294 chr4 62836675 62836841 + 2 NA Intergenic Intergenic -674993 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 362-312 chr4 79796463 79796696 + 2 NA Intergenic L1M5|LINE|L1 -30892 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 331-148 chr14 36014004 36014313 + 2 NA Intergenic HERVL18-int|LTR|ERVL -56269 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 548-158 chr3 180124171 180124667 + 2 NA Intergenic L1MEc|LINE|L1 -87482 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 474-189 chr3 177760901 177761248 + 2 NA Intergenic Intergenic -55791 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 210-60 chr12 73619773 73619945 + 2 NA Intergenic MIR|SINE|MIR 460669 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 436-163 chr20 38470536 38470938 + 2 NA Intergenic FLAM_A|SINE|Alu -2106 NM_001282918 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 385-137 chr17 71038300 71038581 + 2 NA Intergenic Intergenic 163739 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 392-256 chr5 114165812 114166041 + 2 NA Intergenic Intergenic -196144 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 224-256 chr5 73647174 73647391 + 2 NA intron (NM_001177693, intron 1 of 35) Tigger4b|DNA|TcMar-Tigger 21124 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 614-143 chr9 24650617 24651046 + 2 NA Intergenic L1M3a|LINE|L1 -104934 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 671-85 chr6 113265078 113265562 + 2 NA Intergenic HERVK9-int|LTR|ERVK 168127 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 215-318 chr8 118796258 118796435 + 2 NA Intergenic MIR|SINE|MIR 155539 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 463-190 chr3 102491075 102491358 + 2 NA Intergenic MIR|SINE|MIR 56201 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 231-186 chr2 188757393 188757552 + 2 NA intron (NR_161166, intron 1 of 1) L1P4e|LINE|L1 32651 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 259-65 chr11 5608171 5608321 + 2 NA intron (NM_001003818, intron 4 of 7) intron (NM_001003818, intron 4 of 7) 11609 NM_001198645 117854 Hs.729048 NM_058166 ENSG00000121236 TRIM6 RNF89 tripartite motif containing 6 protein-coding 293-120 chr14 69549601 69549844 + 2 NA Intergenic Intergenic 25149 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 225-365 chr8 116133159 116133337 + 2 NA intron (NR_046215, intron 4 of 13) MLT1G1|LTR|ERVL-MaLR 191811 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 399-266 chr6 68839100 68839361 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 203948 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 303-472 chr8 130118170 130118404 + 2 NA intron (NM_001362925, intron 20 of 29) intron (NM_001362925, intron 20 of 29) -33519 NR_045385 100507117 Hs.106015 NR_045385 ENSG00000280543 ASAP1-IT2 - ASAP1 intronic transcript 2 ncRNA 1011-19 chr8 141959794 141960618 + 2 NA Intergenic AluSx1|SINE|Alu -173893 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 303-119 chr14 40273493 40273737 + 2 NA Intergenic Intergenic -681096 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 306-328 chr3 145725038 145725297 + 2 NA Intergenic Intergenic 344018 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 361-417 chr7 62884423 62884701 + 2 NA Intergenic ALR/Alpha|Satellite|centr 419494 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 334-554 chr8 136050403 136050684 + 2 NA Intergenic Intergenic -480255 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 296-204 chr19 37613901 37614107 + 2 NA 3' UTR (NM_001172226, exon 4 of 4) 3' UTR (NM_001172226, exon 4 of 4) 19128 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 208-235 chr6 72166685 72166857 + 2 NA intron (NM_014989, intron 4 of 33) L1M5|LINE|L1 -46122 NM_001350429 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 360-274 chr21 15300368 15300717 + 2 NA Intergenic Intergenic -235542 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 381-55 chr10 78383215 78383422 + 2 NA Intergenic Charlie16a|DNA|hAT-Charlie 115976 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 572-121 chr4 47316156 47316660 + 2 NA intron (NM_000812, intron 4 of 8) L1MA4|LINE|L1 147294 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 361-310 chr3 193936929 193937230 + 2 NA Intergenic L1ME2|LINE|L1 57159 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 399-325 chr9 71832762 71833086 + 2 NA Intergenic L1M1|LINE|L1 -64411 NM_001135820 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 323-34 chr1 213186951 213187152 + 2 NA intron (NR_146209, intron 8 of 11) AluJo|SINE|Alu 135810 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 343-222 chr2 15013135 15013329 + 2 NA Intergenic L1MA5A|LINE|L1 380515 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 349-136 chr12 107473971 107474176 + 2 NA intron (NM_001347944, intron 1 of 14) AluSx|SINE|Alu -106801 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 311-65 chr10 89979110 89979293 + 2 NA Intergenic Intergenic -21828 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 429-196 chr3 90293936 90294313 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1186503 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 372-298 chr22 22829699 22830013 + 2 NA Intergenic MLT2D|LTR|ERVL 7080 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 386-91 chr14 47547000 47547361 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 127774 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 288-193 chr2 70882779 70882979 + 2 NA Intergenic AluJr|SINE|Alu -4992 NR_126384 104355141 Hs.291539 NR_126384 ENSG00000237751 LINC01143 - long intergenic non-protein coding RNA 1143 ncRNA 170-118 chr5 92773457 92773571 + 2 NA Intergenic Intergenic 797829 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 331-290 chr2 152540867 152541158 + 2 NA intron (NM_052905, intron 2 of 25) intron (NM_052905, intron 2 of 25) 176449 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 379-238 chr4 71853875 71854237 + 2 NA Intergenic Intergenic -48536 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 452-54 chr12 28300179 28300567 + 2 NA intron (NM_001352082, intron 4 of 13) L1MC4a|LINE|L1 -109635 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 273-188 chr18 65110111 65110347 + 2 NA Intergenic LTR78|LTR|ERV1 -640023 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 347-96 chr12 72696565 72696885 + 2 NA Intergenic LTR16C|LTR|ERVL -423216 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 305-544 chr8 114940760 114940995 + 2 NA Intergenic Intergenic 727136 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 243-6 chr1 44965211 44965361 + 2 NA intron (NM_001166588, intron 3 of 9) L1MB7|LINE|L1 21309 NM_020365 8891 Hs.533549 NM_020365 ENSG00000070785 EIF2B3 EIF-2B|EIF2Bgamma eukaryotic translation initiation factor 2B subunit gamma protein-coding 271-298 chr4 32870323 32870495 + 2 NA Intergenic AluJb|SINE|Alu 519371 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 315-98 chr12 26324902 26325088 + 2 NA Intergenic Intergenic 129422 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 317-160 chr14 87692445 87692647 + 2 NA Intergenic Intergenic -37252 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 384-224 chr3 71264500 71264829 + 2 NA intron (NR_146142, intron 5 of 19) intron (NR_146142, intron 5 of 19) -19587 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 198-178 chr4 45257214 45257396 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -530671 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 470-263 chr8 58949413 58949771 + 2 NA intron (NM_014729, intron 2 of 8) MIR3|SINE|MIR 169555 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 453-300 chr9 72720598 72720849 + 2 NA intron (NM_138691, intron 8 of 23) LTR102_Mam|LTR|ERVL 153386 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 328-586 chr8 135862201 135862478 + 2 NA Intergenic (CAC)n|Simple_repeat|Simple_repeat 404883 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 327-83 chr11 46015527 46015719 + 2 NA intron (NR_147890, intron 5 of 18) Tigger3b|DNA|TcMar-Tigger 92967 NM_001300721 120071 Hs.86543 NM_152312 ENSG00000165905 LARGE2 GYLTL1B|PP5656 LARGE xylosyl- and glucuronyltransferase 2 protein-coding 320-350 chr3 69806843 69807052 + 2 NA intron (NM_001354607, intron 2 of 10) intron (NM_001354607, intron 2 of 10) 43136 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 290-15 chr1 87546138 87546288 + 2 NA Intergenic L1MA3|LINE|L1 -174558 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 395-58 chr11 83648459 83648758 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) 33817 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 169-80 chr3 162232642 162232762 + 2 NA Intergenic MER66-int|LTR|ERV1 735894 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 337-505 chr6 135733933 135734125 + 2 NA Intergenic LTR16A|LTR|ERVL -117672 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 470-49 chr12 40392062 40392495 + 2 NA Intergenic Intergenic -1116 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 352-247 chr2 104858430 104858754 + 2 NA TTS (NM_006236) TTS (NM_006236) 4477 NM_006236 5455 Hs.248158 NM_006236 ENSG00000198914 POU3F3 BRN1|OTF8|brain-1|oct-8 POU class 3 homeobox 3 protein-coding 267-346 chr5 129060384 129060645 + 2 NA Intergenic L1M1|LINE|L1 -34235 NM_016048 51015 Hs.483296 NM_016048 ENSG00000066583 ISOC1 CGI-111 isochorismatase domain containing 1 protein-coding 225-284 chr5 92951285 92951438 + 2 NA Intergenic L1MA4A|LINE|L1 619982 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 456-330 chr8 134377820 134378194 + 2 NA Intergenic Intergenic -220064 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 113-28 chr2 47017715 47017798 + 2 NA intron (NM_001288951, intron 11 of 20) intron (NM_001288951, intron 11 of 20) -75901 NM_001171508 90411 Hs.662152 NM_139279 ENSG00000180398 MCFD2 F5F8D|F5F8D2|LMAN1IP|SDNSF multiple coagulation factor deficiency 2 protein-coding 525-130 chr2 153756424 153756911 + 2 NA Intergenic Intergenic -115255 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 325-530 chr8 25846868 25847105 + 2 NA intron (NM_022659, intron 15 of 15) intron (NM_022659, intron 15 of 15) 198427 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 306-416 chr5 175145276 175145510 + 2 NA Intergenic L1MC3|LINE|L1 -149662 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 437-186 chr4 18732000 18732361 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -710305 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 284-403 chr8 74248185 74248364 + 2 NA intron (NM_020647, intron 3 of 5) MamRTE1|LINE|RTE-BovB 73087 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 358-194 chr2 33073230 33073507 + 2 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -61229 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 194-104 chr2 204716466 204716602 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 171059 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 254-25 chr1 223236167 223236397 + 2 NA intron (NM_001037175, intron 5 of 5) L1MC1|LINE|L1 -93034 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 355-202 chr17 74609884 74610096 + 2 NA 3' UTR (NM_181449, exon 4 of 4) 3' UTR (NM_181449, exon 4 of 4) 10150 NR_158152 101928343 Hs.93825 NR_158152 LOC101928343 - uncharacterized LOC101928343 ncRNA 369-184 chr2 17391439 17391651 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 126895 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 279-373 chr6 126213152 126213390 + 2 NA Intergenic L1MA3|LINE|L1 -126518 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 349-160 chr14 57627843 57628057 + 2 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -134093 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 461-74 chr14 33876463 33876888 + 2 NA Intergenic L1MB2|LINE|L1 74399 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 295-76 chr11 76274465 76274720 + 2 NA Intergenic MLT1K-int|LTR|ERVL-MaLR -68090 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 289-74 chr10 130310591 130310871 + 2 NA Intergenic Intergenic 174322 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 435-268 chr9 103183613 103184003 + 2 NA intron (NR_121578, intron 8 of 9) LTR18B|LTR|ERVL 141225 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 239-58 chr11 70898318 70898514 + 2 NA intron (NM_012309, intron 9 of 24) MLT1-int|LTR|ERVL-MaLR -26048 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 303-303 chr3 196741234 196741457 + 2 NA intron (NM_002577, intron 1 of 14) intron (NM_002577, intron 1 of 14) 1488 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 285-249 chr21 23828737 23828940 + 2 NA Intergenic Intergenic -444003 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 532-130 chr2 116439512 116439864 + 2 NA Intergenic Intergenic 1095873 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 466-220 chr5 169522468 169522734 + 2 NA Intergenic Intergenic -61172 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 526-259 chr9 28394297 28394757 + 2 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 324778 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 317-266 chr2 225706720 225706937 + 2 NA Intergenic MIR|SINE|MIR 305942 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 248-334 chr5 174802695 174802924 + 2 NA Intergenic AluJo|SINE|Alu 51075 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 203-197 chr6 35689927 35690099 + 2 NA intron (NM_001145775, intron 2 of 11) MIR3|SINE|MIR -1071 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 220-4 chr1 56633610 56633771 + 2 NA intron (NR_135111, intron 2 of 2) intron (NR_135111, intron 2 of 2) -11624 NM_006252 5563 Hs.437039 NM_006252 ENSG00000162409 PRKAA2 AMPK|AMPK2|AMPKa2|PRKAA protein kinase AMP-activated catalytic subunit alpha 2 protein-coding 514-108 chr16 7297055 7297453 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -35591 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 442-235 chr5 109056737 109057030 + 2 NA intron (NR_146155, intron 16 of 19) L1ME1|LINE|L1 132277 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 529-64 chr14 40356072 40356498 + 2 NA Intergenic Intergenic -598426 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 298-454 chr8 53434384 53434636 + 2 NA Intergenic HAL1ME|LINE|L1 89455 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 427-257 chr8 82841507 82841843 + 2 NA Intergenic Intergenic -70429 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 326-419 chr5 91963389 91963607 + 2 NA Intergenic Intergenic -580181 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 228-189 chr20 18083701 18083890 + 2 NA Intergenic Intergenic -24607 NM_001303462 58495 Hs.661013 NM_021220 ENSG00000125850 OVOL2 CHED|CHED1|CHED2|EUROIMAGE566589|PPCD1|ZNF339 ovo like zinc finger 2 protein-coding 465-167 chr22 47243610 47243966 + 2 NA Intergenic L1MEf|LINE|L1 -101783 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 333-375 chr3 187173916 187174175 + 2 NA Intergenic Intergenic -23441 NM_153708 132112 Hs.518480 NM_153708 ENSG00000175077 RTP1 Z3CXXC1 receptor transporter protein 1 protein-coding 286-227 chr2 180337056 180337214 + 2 NA Intergenic MER61-int|LTR|ERV1 -329838 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 733-59 chr4 74020190 74020785 + 2 NA Intergenic Intergenic 18202 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 185-194 chr7 113539928 113540094 + 2 NA Intergenic L1M2a|LINE|L1 378998 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 635-117 chr8 131423863 131424272 + 2 NA Intergenic Intergenic -383158 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 270-196 chr2 170635621 170635778 + 2 NA intron (NM_001083615, intron 31 of 33) L5|LINE|RTE-X 78868 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 362-118 chr12 60413651 60413980 + 2 NA Intergenic Intergenic 724445 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 734-6 chr1 169531508 169532022 + 2 NA intron (NM_000130, intron 14 of 24) intron (NM_000130, intron 14 of 24) -45795 NM_001319667 10560 Hs.30246 NM_006996 ENSG00000117479 SLC19A2 TC1|THMD1|THT1|THTR1|TRMA solute carrier family 19 member 2 protein-coding 396-13 chr1 88914752 88915065 + 2 NA Intergenic L1MD3|LINE|L1 -23341 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 226-233 chr3 122852312 122852500 + 2 NA intron (NM_032839, intron 5 of 8) L1MEg|LINE|L1 -34107 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 613-11 chr1 205695785 205696295 + 2 NA Intergenic AluSx3|SINE|Alu -15531 NM_033102 85414 Hs.278695 NM_033102 ENSG00000158715 SLC45A3 IPCA-2|IPCA-6|IPCA-8|IPCA6|PCANAP2|PCANAP6|PCANAP8|PRST solute carrier family 45 member 3 protein-coding 208-278 chr8 140151726 140151877 + 2 NA intron (NM_001160372, intron 17 of 22) L2c|LINE|L2 -51266 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 316-257 chr2 35411519 35411789 + 2 NA Intergenic L2a|LINE|L2 -59751 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 220-140 chr18 21006175 21006352 + 2 NA intron (NM_005406, intron 16 of 32) L1MB3|LINE|L1 105550 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 319-105 chr12 15039684 15039871 + 2 NA Intergenic Intergenic 37944 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 332-256 chr2 104243662 104243958 + 2 NA Intergenic L1MA5|LINE|L1 164522 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 196-15 chr1 117294085 117294263 + 2 NA Intergenic Intergenic -1292 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 220-168 chr2 77030466 77030657 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 44596 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 442-248 chr6 43593500 43593756 + 2 NA intron (NM_006502, intron 4 of 10) AluSc|SINE|Alu 17443 NM_001291970 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 687 chr1 5325252 5325835 + 2 NA Intergenic Intergenic 537198 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 259-180 chr19 37675712 37675964 + 2 NA intron (NM_152605, intron 3 of 3) intron (NM_152605, intron 3 of 3) 16477 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 324-169 chr14 84318106 84318412 + 2 NA Intergenic L1MA4A|LINE|L1 -953673 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 339-238 chr2 903840 904120 + 2 NA intron (NR_110179, intron 1 of 3) intron (NR_110179, intron 1 of 3) 1471 NR_110179 101060385 Hs.385965 NR_110179 ENSG00000228799 LINC01939 - long intergenic non-protein coding RNA 1939 ncRNA 220-205 chr20 52334670 52334856 + 2 NA Intergenic Intergenic -142778 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 261-323 chr5 162364512 162364765 + 2 NA Intergenic Intergenic 296996 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 198-246 chr8 112027776 112027876 + 2 NA Intergenic L1MEd|LINE|L1 -615667 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 302-317 chr4 44410003 44410243 + 2 NA intron (NM_198353, intron 1 of 1) Tigger15a|DNA|TcMar-Tigger 38686 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 311-453 chr6 148191952 148192119 + 2 NA Intergenic Intergenic -80293 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 369-412 chr8 98942935 98943296 + 2 NA promoter-TSS (NM_001256312) promoter-TSS (NM_001256312) -505 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 506-250 chr6 50020062 50020500 + 2 NA intron (NM_001037497, intron 1 of 1) intron (NM_001037497, intron 1 of 1) 1700 NM_001037728 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 304-328 chr3 21218368 21218592 + 2 NA Intergenic Intergenic -187246 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 300-190 chr2 63292202 63292438 + 2 NA intron (NR_148704, intron 14 of 18) intron (NR_148704, intron 14 of 18) 145687 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 861-37 chr8 140134622 140135269 + 2 NA intron (NM_001160372, intron 17 of 22) L1MB4|LINE|L1 -34410 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 322-515 chr8 43684660 43684910 + 2 NA Intergenic ALR/Alpha|Satellite|centr 392343 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 305-283 chr2 179932875 179933144 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -71397 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 547-90 chr19 29493116 29493471 + 2 NA intron (NR_040029, intron 1 of 9) HAL1b|LINE|L1 32459 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 341-392 chr4 108406129 108406310 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -151014 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 322-219 chr18 51962738 51962927 + 2 NA Intergenic Intergenic -377365 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 536-26 chr1 238638860 238639235 + 2 NA Intergenic L1MD3|LINE|L1 -153030 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 363-197 chr19 39614926 39615194 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 12536 NM_013268 29124 Hs.23671 NM_013268 ENSG00000105198 LGALS13 GAL13|PLAC8|PP13 galectin 13 protein-coding 337-300 chr2 241745071 241745330 + 2 NA intron (NR_109778, intron 6 of 7) intron (NR_109778, intron 6 of 7) 10570 NR_109778 728294 Hs.516813 NM_152783 ENSG00000180902 D2HGDH D2HGD D-2-hydroxyglutarate dehydrogenase protein-coding 180-88 chr2 133517554 133517671 + 2 NA intron (NM_207481, intron 2 of 17) intron (NM_207481, intron 2 of 17) 50851 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 348-323 chr3 135332115 135332325 + 2 NA Intergenic L1MA10|LINE|L1 536960 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 354-301 chr3 83301118 83301379 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger 1315106 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 227-258 chr4 79070386 79070562 + 2 NA intron (NR_038342, intron 2 of 5) L1MEf|LINE|L1 98726 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 316-166 chr14 44392007 44392276 + 2 NA Intergenic Intergenic 115142 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 430-70 chr12 128523190 128523473 + 2 NA intron (NM_001136103, intron 2 of 8) L1MB3|LINE|L1 229239 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 234-220 chr21 29560958 29561141 + 2 NA intron (NM_000830, intron 15 of 16) intron (NM_000830, intron 15 of 16) -34991 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 646-101 chr5 51336059 51336635 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 46985 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 344-385 chr5 50168459 50168657 + 2 NA Intergenic ALR/Alpha|Satellite|centr 272730 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 380-312 chr5 105447902 105448162 + 2 NA Intergenic L1ME1|LINE|L1 348558 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 251-398 chr8 110603172 110603360 + 2 NA Intergenic L1MDa|LINE|L1 424167 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 329-498 chr6 70256103 70256295 + 2 NA intron (NM_001851, intron 21 of 37) intron (NM_001851, intron 21 of 37) 26998 NM_078485 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 528-109 chr17 52522901 52523226 + 2 NA intron (NR_146898, intron 1 of 3) AluSx1|SINE|Alu 132541 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 299-216 chr2 119103158 119103387 + 2 NA Intergenic L1MEc|LINE|L1 55479 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 249-5 chr1 49302036 49302238 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) 44726 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 320-469 chr5 159642637 159642870 + 2 NA Intergenic MER20|DNA|hAT-Charlie -176477 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 386-303 chr5 155853506 155853837 + 2 NA Intergenic Intergenic -473086 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 313-245 chr2 41501451 41501675 + 2 NA Intergenic LTR9A1|LTR|ERV1 -375992 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 399-7 chr1 110920848 110921148 + 2 NA Intergenic L1MC1|LINE|L1 42924 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 462-66 chr12 114548057 114548455 + 2 NA Intergenic Intergenic 135919 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 227-337 chr7 24523353 24523568 + 2 NA Intergenic L1MD2|LINE|L1 -49992 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 438-202 chr4 122307671 122308028 + 2 NA intron (NM_015312, intron 55 of 83) intron (NM_015312, intron 55 of 83) -71162 NM_139243 132612 Hs.518957 NM_139243 ENSG00000164113 ADAD1 Tenr adenosine deaminase domain containing 1 protein-coding 322-29 chr1 167227649 167227832 + 2 NA intron (NM_001198786, intron 1 of 14) intron (NM_001198786, intron 1 of 14) 6854 NM_001198786 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 241-379 chr7 129662539 129662707 + 2 NA intron (NM_001293164, intron 2 of 9) L1MEg|LINE|L1 32545 NM_001040110 4899 Hs.654363 NM_005011 ENSG00000106459 NRF1 ALPHA-PAL nuclear respiratory factor 1 protein-coding 261-253 chr3 120540679 120540870 + 2 NA Intergenic L1PB2|LINE|L1 -55562 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 448-252 chr7 22909784 22910042 + 2 NA Intergenic L2b|LINE|L2 53300 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 214-65 chr11 83685527 83685732 + 2 NA intron (NM_001142699, intron 18 of 27) L2a|LINE|L2 -3204 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 465-100 chr16 82901629 82901970 + 2 NA intron (NM_001220490, intron 2 of 12) L2a|LINE|L2 88499 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 441-162 chr3 94860949 94861343 + 2 NA Intergenic L1PA16|LINE|L1 -77117 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 329-263 chr2 22244969 22245142 + 2 NA Intergenic Intergenic -291424 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 496-272 chr7 138263289 138263719 + 2 NA Intergenic AluSx|SINE|Alu 139746 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 427-277 chr9 80710521 80710819 + 2 NA Intergenic Intergenic 735647 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 639-16 chr10 88239793 88240310 + 2 NA Intergenic Intergenic 343267 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 248-316 chr5 79000058 79000217 + 2 NA intron (NM_013391, intron 15 of 15) intron (NM_013391, intron 15 of 15) -14179 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 326-211 chr18 51300468 51300724 + 2 NA Intergenic (TATTATA)n|Simple_repeat|Simple_repeat -91446 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 328-337 chr3 7819671 7819889 + 2 NA Intergenic Intergenic 196527 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 161-72 chr3 183216393 183216511 + 2 NA intron (NM_015078, intron 21 of 29) (TA)n|Simple_repeat|Simple_repeat -36801 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 363-379 chr5 162931885 162932169 + 2 NA Intergenic L1MA4A|LINE|L1 -505544 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 223-126 chr18 7695341 7695500 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 128104 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 223-306 chr6 130203792 130203954 + 2 NA intron (NM_001277185, intron 4 of 10) intron (NM_001277185, intron 4 of 10) 12012 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 286-44 chr10 80312166 80312362 + 2 NA Intergenic L1MB5|LINE|L1 -22606 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 386-290 chr5 62707220 62707464 + 2 NA Intergenic Intergenic 128523 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 329-270 chr2 51884037 51884280 + 2 NA intron (NR_135237, intron 7 of 10) L1PA15|LINE|L1 -486490 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 210-154 chr20 46151627 46151791 + 2 NA Intergenic Intergenic 33395 NR_136327 958 Hs.472860 NM_001250 ENSG00000101017 CD40 Bp50|CDW40|TNFRSF5|p50 CD40 molecule protein-coding 318-489 chr6 134848270 134848527 + 2 NA Intergenic MIR1_Amn|SINE|MIR 101703 NM_001193480 64577 Hs.486520 NM_022568 ENSG00000118514 ALDH8A1 ALDH12|DJ352A20.2 aldehyde dehydrogenase 8 family member A1 protein-coding 271-104 chr12 74383544 74383759 + 2 NA Intergenic MLT2C1|LTR|ERVL -91020 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 589-5 chr1 150659725 150660043 + 2 NA intron (NM_018178, intron 4 of 4) AluJb|SINE|Alu -30262 NM_207043 2029 Hs.632456 NM_004436 ENSG00000143420 ENSA ARPP-19e endosulfine alpha protein-coding 166-120 chr8 133304902 133305039 + 2 NA Intergenic Intergenic -7666 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 226-381 chr9 75048892 75049049 + 2 NA Intergenic MIRc|SINE|MIR -20540 NR_135282 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 438-195 chr4 61007218 61007558 + 2 NA Intergenic L2c|LINE|L2 84769 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 378-276 chr3 32262357 32262615 + 2 NA intron (NM_001320308, intron 1 of 2) intron (NM_001320308, intron 1 of 2) 23806 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 507-149 chr20 41431036 41431443 + 2 NA intron (NM_032221, intron 27 of 36) intron (NM_032221, intron 27 of 36) -64421 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 374-192 chr2 111212081 111212283 + 2 NA intron (NR_015395, intron 5 of 6) L1ME1|LINE|L1 91268 NM_001204107 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 251-204 chr20 46629295 46629436 + 2 NA intron (NM_001193340, intron 2 of 12) L1M7|LINE|L1 22094 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 544-54 chr12 38812947 38813436 + 2 NA intron (NM_153634, intron 6 of 19) intron (NM_153634, intron 6 of 19) 92400 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 314-529 chr7 36035991 36036166 + 2 NA Intergenic MIRb|SINE|MIR -59232 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 206-121 chr2 116200493 116200661 + 2 NA Intergenic L1MC1|LINE|L1 856762 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 347-267 chr20 41977455 41977659 + 2 NA Intergenic Intergenic -359180 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 365-215 chr2 176989124 176989415 + 2 NA Intergenic Intergenic 223142 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 309-161 chr14 81898680 81898945 + 2 NA Intergenic L1MA2|LINE|L1 -155674 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 447-159 chr21 34704210 34704564 + 2 NA intron (NM_053277, intron 1 of 5) intron (NM_053277, intron 1 of 5) 32795 NR_024351 54064 Hs.436868 NR_024351 ENSG00000230978 LINC00160 C21orf52|NCRNA00160 long intergenic non-protein coding RNA 160 ncRNA 240-351 chr5 44997897 44998079 + 2 NA Intergenic Intergenic 189041 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 256-87 chr12 41609765 41609933 + 2 NA Intergenic Intergenic -154340 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 142-55 chr4 67607993 67608089 + 2 NA TTS (NM_001317769) TTS (NM_001317769) 49314 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 300-106 chr14 40067898 40068062 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -635480 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 216-291 chr5 127909626 127909835 + 2 NA intron (NM_001317938, intron 6 of 6) intron (NM_001317938, intron 6 of 6) 173445 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 351-140 chr14 84867723 84868022 + 2 NA Intergenic (TTTATT)n|Simple_repeat|Simple_repeat -404060 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 212-87 chr12 78246263 78246437 + 2 NA Intergenic L2|LINE|L2 113396 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 223-249 chr4 61328157 61328347 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 126080 NM_001371342 324-418 chr5 15855500 15855782 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -79541 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 445-285 chr9 27723438 27723837 + 2 NA Intergenic Intergenic -149771 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 720-60 chr3 108279809 108280346 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -16413 NM_001282556 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 215-103 chr16 59749471 59749651 + 2 NA Intergenic Intergenic 5630 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 171-86 chr3 190970459 190970563 + 2 NA Intergenic Intergenic 92581 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 300-145 chr16 65864870 65865066 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -288668 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 378-24 chr1 157888305 157888624 + 2 NA Intergenic L1MD2|LINE|L1 -37503 NR_135760 105371458 Hs.591494 NR_135760 ENSG00000236957 LOC105371458 - uncharacterized LOC105371458 ncRNA 543-231 chr7 62726916 62727301 + 2 NA Intergenic ALR/Alpha|Satellite|centr 576948 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 513-126 chr2 40978153 40978572 + 2 NA Intergenic Intergenic -465927 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 386-366 chr8 135972492 135972764 + 2 NA Intergenic Intergenic 515172 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 332-196 chr17 28173713 28174025 + 2 NA intron (NM_016231, intron 7 of 10) intron (NM_016231, intron 7 of 10) -52694 NR_003064 23615 Hs.157195 NM_021093 ENSG00000237575 PYY2 - peptide YY 2 (pseudogene) pseudo 339-343 chr22 46258108 46258330 + 2 NA exon (NM_006071, exon 1 of 1) exon (NM_006071, exon 1 of 1) 5124 NM_006071 10343 Hs.241383 NM_006071 ENSG00000130943 PKDREJ - polycystin family receptor for egg jelly protein-coding 348-108 chr12 31923416 31923623 + 2 NA Intergenic Intergenic -35896 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 429-95 chr14 82365578 82365842 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -276922 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 170-89 chr3 805542 805655 + 2 NA intron (NR_110118, intron 2 of 3) L3|LINE|CR1 213493 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 287-54 chr10 56989984 56990214 + 2 NA Intergenic Intergenic 314460 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 300-11 chr1 91770062 91770297 + 2 NA intron (NR_036634, intron 4 of 17) intron (NR_036634, intron 4 of 17) 115972 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 512-115 chr2 31054938 31055298 + 2 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 74522 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 191-39 chr12 27017993 27018140 + 2 NA Intergenic Intergenic -3682 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 330-111 chr12 16694700 16694921 + 2 NA Intergenic L1MA6|LINE|L1 -86596 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 594-136 chr7 11475339 11475914 + 2 NA intron (NM_015204, intron 7 of 26) (TA)n|Simple_repeat|Simple_repeat 356572 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 418-25 chr10 23470666 23470946 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 31537 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 314-71 chr10 76369725 76370015 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -518174 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 264-326 chr5 74584347 74584563 + 2 NA Intergenic L2c|LINE|L2 -47479 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 362-412 chr7 108807510 108807753 + 2 NA Intergenic Intergenic 76956 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 364-26 chr1 164340407 164340744 + 2 NA Intergenic Intergenic -218785 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 161-46 chr2 13539632 13539773 + 2 NA Intergenic Intergenic -532689 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 220-217 chr3 19453251 19453396 + 2 NA intron (NM_144633, intron 10 of 15) L1PB4|LINE|L1 -138392 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 316-283 chr2 116243679 116243867 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 899958 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 304-136 chr14 33637086 33637381 + 2 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -71704 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 525-69 chr14 32885746 32886216 + 2 NA Intergenic L1MA8|LINE|L1 -52898 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 389-262 chr4 55343729 55343977 + 2 NA Intergenic L2|LINE|L2 -2389 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 403-52 chr11 70763454 70763668 + 2 NA intron (NM_012309, intron 13 of 24) intron (NM_012309, intron 13 of 24) -99229 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 195-226 chr7 56464895 56465057 + 2 NA Intergenic L1MB2|LINE|L1 -16601 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 366-454 chr8 132883235 132883502 + 2 NA intron (NM_003235, intron 8 of 47) intron (NM_003235, intron 8 of 47) 16410 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 375-306 chr4 158409542 158409729 + 2 NA Intergenic Intergenic -112079 NM_001363776 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 304-30 chr1 217349188 217349359 + 2 NA Intergenic Intergenic -211571 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 412-339 chr9 24856070 24856329 + 2 NA Intergenic Intergenic -310302 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 521-32 chr10 83260385 83260794 + 2 NA Intergenic HAL1|LINE|L1 416500 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 336-544 chr8 90139903 90140140 + 2 NA Intergenic L1MEf|LINE|L1 -57142 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 174-77 chr20 39918301 39918425 + 2 NA Intergenic Intergenic -86098 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 278-233 chr2 164257988 164258183 + 2 NA Intergenic Intergenic 310410 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 462-294 chr9 27164236 27164654 + 2 NA intron (NM_001290077, intron 2 of 21) AluY|SINE|Alu 55304 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 428-13 chr1 176302799 176303140 + 2 NA Intergenic Intergenic -95683 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 346-458 chr7 25631725 25631900 + 2 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 31328 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 299-45 chr10 32656061 32656290 + 2 NA intron (NM_001321115, intron 21 of 43) L1MA9|LINE|L1 210035 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 391-39 chr10 51171770 51172032 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 97414 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 290-3 chr1 32493466 32493733 + 2 NA 3' UTR (NM_001145720, exon 4 of 4) 3' UTR (NM_001145720, exon 4 of 4) 28527 NM_001145720 728116 Hs.647658 NM_001145720 ENSG00000273274 ZBTB8B ZNF916B zinc finger and BTB domain containing 8B protein-coding 173-54 chr18 2200733 2200859 + 2 NA Intergenic Intergenic 370709 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 313-411 chr4 163840735 163840999 + 2 NA intron (NM_001166373, intron 3 of 7) L1MA9|LINE|L1 -227333 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 318-114 chr11 104286914 104287135 + 2 NA Intergenic Intergenic -122877 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 398-248 chr4 127003052 127003442 + 2 NA Intergenic Intergenic -629710 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 518-200 chr4 58163580 58164087 + 2 NA Intergenic Intergenic 372495 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 582 chr1 29766262 29766633 + 2 NA Intergenic L1ME2|LINE|L1 271165 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 475-102 chr16 79686390 79686788 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -83882 NR_104660 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 719-89 chr9 129196035 129196529 + 2 NA Intergenic Intergenic -18021 NM_203434 389792 Hs.529857 NM_203434 ENSG00000188483 IER5L bA247A12.2 immediate early response 5 like protein-coding 625-104 chr7 62666804 62667266 + 2 NA Intergenic L1PA4|LINE|L1 637021 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 496-187 chr3 164920192 164920561 + 2 NA Intergenic Intergenic -88896 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 299-411 chr7 24617636 24617883 + 2 NA intron (NM_001303037, intron 1 of 11) L1MA5A|LINE|L1 44307 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 529-212 chr8 55290770 55291176 + 2 NA intron (NM_052898, intron 1 of 2) L1MD1|LINE|L1 164348 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 589-58 chr19 37693908 37694329 + 2 NA Intergenic AluSc5|SINE|Alu -1803 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 549-20 chr10 24576319 24576802 + 2 NA Intergenic L1MEd|LINE|L1 46283 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 240-225 chr2 122766047 122766276 + 2 NA Intergenic L1PA17|LINE|L1 307320 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 123-50 chr6 47747251 47747338 + 2 NA Intergenic Intergenic -34745 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 755-13 chr10 118866608 118867066 + 2 NA Intergenic MIR3|SINE|MIR -111867 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 203-168 chr4 103340076 103340257 + 2 NA Intergenic Intergenic -84876 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 308-408 chr6 5640278 5640455 + 2 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) 54906 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 127-72 chr7 2651202 2651314 + 2 NA intron (NM_025250, intron 7 of 13) intron (NM_025250, intron 7 of 13) 19272 NM_025250 80727 Hs.440899 NM_025250 ENSG00000136295 TTYH3 - tweety family member 3 protein-coding 319-580 chrUn_KI270756v1 15634 15850 + 2 NA NA (CCATTCCATT)n|Simple_repeat|Simple_repeat NA NA 358-224 chr2 100164875 100165127 + 2 NA Intergenic L1MEg|LINE|L1 -22411 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 360-367 chr5 63100196 63100397 + 2 NA Intergenic LTR101_Mam|LTR|ERVL 521477 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 482-278 chr8 121315831 121316214 + 2 NA Intergenic Intergenic -323324 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 230-253 chr4 8250139 8250290 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -19540 NM_053044 94031 Hs.479119 NM_053044 ENSG00000170801 HTRA3 Prsp|Tasp HtrA serine peptidase 3 protein-coding 299-119 chr13 37535714 37535965 + 2 NA non-coding (NR_040244, exon 2 of 5) non-coding (NR_040244, exon 2 of 5) 899 NR_040244 400121 Hs.558894 NR_040244 ENSG00000275226 LINC00547 - long intergenic non-protein coding RNA 547 ncRNA 502-249 chr7 89416731 89417145 + 2 NA Intergenic Intergenic -621201 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 280-154 chr16 68570136 68570276 + 2 NA intron (NM_001305204, intron 4 of 4) L2|LINE|L2 30915 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 418-151 chr3 19496726 19497038 + 2 NA intron (NM_144633, intron 11 of 15) L1PREC2|LINE|L1 -181951 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 172-98 chr5 8140329 8140469 + 2 NA Intergenic L1M5|LINE|L1 271251 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 373-153 chr17 3366570 3366824 + 2 NA Intergenic Intergenic 31713 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 300-7 chr1 62280116 62280388 + 2 NA intron (NM_181712, intron 2 of 9) intron (NM_181712, intron 2 of 9) 39182 NM_001320269 163782 Hs.283398 NM_181712 ENSG00000132854 KANK4 ANKRD38|dJ1078M7.1 KN motif and ankyrin repeat domains 4 protein-coding 204-179 chr21 31427376 31427574 + 2 NA intron (NM_001353690, intron 1 of 27) AluYj4|SINE|Alu -83121 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 365-65 chr11 24401377 24401659 + 2 NA Intergenic Intergenic -95535 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 360-328 chr4 62093676 62093866 + 2 NA intron (NR_110595, intron 6 of 7) L1PA7|LINE|L1 67994 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 292-361 chr5 147462050 147462338 + 2 NA intron (NM_001197294, intron 1 of 13) ERV3-16A3_I-int|LTR|ERVL -8502 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 287-202 chr2 115096725 115096968 + 2 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 32273 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 513-58 chr12 40667943 40668332 + 2 NA Intergenic Intergenic -24302 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 461-274 chr8 118872404 118872702 + 2 NA Intergenic Intergenic 79332 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 232-238 chr3 61445727 61445925 + 2 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat -115745 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 208-177 chr3 173616017 173616192 + 2 NA intron (NM_001365928, intron 3 of 6) L2c|LINE|L2 31670 NM_001365927 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 382-228 chr2 220927412 220927735 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 644731 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 187-194 chrX 127649282 127649434 + 2 NA Intergenic Intergenic 403045 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 455-197 chr4 148943372 148943702 + 2 NA Intergenic Intergenic -1159 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 192-140 chr4 15398570 15398724 + 2 NA intron (NM_001135171, intron 1 of 2) intron (NM_001135171, intron 1 of 2) 24096 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 277-228 chr20 39242937 39243100 + 2 NA Intergenic L1ME1|LINE|L1 -18270 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 383-301 chr5 13706049 13706334 + 2 NA intron (NM_001369, intron 76 of 78) intron (NM_001369, intron 76 of 78) 238289 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 297-189 chr19 27660161 27660321 + 2 NA Intergenic HSAT4|Satellite|centr -133190 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 320-49 chr10 20614100 20614324 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 62242 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 490-169 chr20 60846484 60846775 + 2 NA Intergenic Intergenic -232435 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 517-105 chr18 449238 449656 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 51254 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 252-381 chr6 146031023 146031217 + 2 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 1922 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 271-416 chr7 113834690 113834902 + 2 NA Intergenic Intergenic 84213 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 333-82 chr11 41970716 41970937 + 2 NA Intergenic L1ME1|LINE|L1 114632 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 277-303 chr4 179903015 179903186 + 2 NA Intergenic Intergenic 1256049 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 346-92 chr12 15070484 15070671 + 2 NA Intergenic Intergenic 68744 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 275-197 chr2 77644864 77645082 + 2 NA Intergenic L1MB7|LINE|L1 -122540 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 424-298 chrX 40589538 40589915 + 2 NA intron (NM_005765, intron 2 of 8) intron (NM_005765, intron 2 of 8) 8756 NM_005765 10159 Hs.495960 NM_005765 ENSG00000182220 ATP6AP2 APT6M8-9|ATP6IP2|ATP6M8-9|ELDF10|HT028|M8-9|MRXE|MRXSH|MSTP009|PRR|RENR|XMRE|XPDS ATPase H+ transporting accessory protein 2 protein-coding 399-188 chr21 21811765 21812075 + 2 NA Intergenic Intergenic 64935 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 393-140 chr18 13568540 13568867 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) -42411 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 394-69 chr11 131764813 131765051 + 2 NA intron (NM_001352006, intron 2 of 9) MIRb|SINE|MIR -101376 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 335-230 chr2 16782214 16782432 + 2 NA Intergenic Intergenic -116489 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 265-162 chr19 21939625 21939798 + 2 NA TTS (NM_001329971) TTS (NM_001329971) 71232 NM_001329971 7757 Hs.732975 NM_007153 ENSG00000160321 ZNF208 PMIDP|ZNF95 zinc finger protein 208 protein-coding 282-250 chr2 219192562 219192731 + 2 NA Intergenic AluSx4|SINE|Alu 13937 NM_001321110 79137 Hs.516707 NM_024293 ENSG00000144567 RETREG2 C2orf17|FAM134A|MAG-2 reticulophagy regulator family member 2 protein-coding 209-348 chr9 105127698 105127891 + 2 NA Intergenic MIRb|SINE|MIR -116811 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 414-31 chr10 76842502 76842755 + 2 NA Intergenic L1MC5|LINE|L1 -45416 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 164-53 chr2 22155055 22155166 + 2 NA Intergenic Intergenic -381369 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 328-165 chr14 88930010 88930318 + 2 NA Intergenic Intergenic 105513 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 332-401 chr5 12210226 12210514 + 2 NA Intergenic Intergenic -305924 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 430-134 chr19 36206495 36206848 + 2 NA intron (NM_001366188, intron 1 of 4) AluSz|SINE|Alu 6908 NM_001366189 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 306-505 chr8 79671663 79671922 + 2 NA Intergenic L2a|LINE|L2 60675 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 674-41 chr18 13157934 13158469 + 2 NA Intergenic L1MA4|LINE|L1 -60559 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 620-36 chr14 47087228 47087758 + 2 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 255753 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 320-378 chr4 31346549 31346719 + 2 NA Intergenic L1MB7|LINE|L1 -159910 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 539-85 chr16 51477715 51478113 + 2 NA Intergenic L1MA6|LINE|L1 -284605 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 733-67 chr5 168991023 168991527 + 2 NA intron (NM_003062, intron 4 of 35) MIR|SINE|MIR -21952 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 305-389 chr4 62965641 62965923 + 2 NA Intergenic L1ME2|LINE|L1 -804017 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 331-503 chr7 67751845 67752038 + 2 NA Intergenic Intergenic -268312 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 183-149 chr7 113904938 113905082 + 2 NA intron (NM_002711, intron 1 of 3) intron (NM_002711, intron 1 of 3) 13999 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 317-528 chr9 80935784 80935951 + 2 NA Intergenic L2a|LINE|L2 753668 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 358-403 chr6 56925477 56925731 + 2 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) 29226 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 532-85 chr16 13887085 13887403 + 2 NA Intergenic MIRc|SINE|MIR -32913 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 199-244 chr8 121917520 121917669 + 2 NA Intergenic Intergenic -276154 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 193-134 chr21 14758677 14758845 + 2 NA Intergenic Intergenic -115654 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 410-124 chr2 12609264 12609617 + 2 NA Intergenic L1ME1|LINE|L1 -107432 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 327-371 chr4 105409105 105409288 + 2 NA intron (NM_176867, intron 1 of 5) L1PA6|LINE|L1 -56315 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 310-565 chrX 6395853 6396085 + 2 NA Intergenic MIRb|SINE|MIR -12006 NR_039927 100616373 NR_039927 ENSG00000265284 MIR4770 - microRNA 4770 ncRNA 220-266 chr4 144276888 144277073 + 2 NA Intergenic Intergenic -136262 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 455-306 chrX 122052846 122053210 + 2 NA Intergenic Intergenic 682056 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 293-282 chr3 157691987 157692202 + 2 NA Intergenic Intergenic 148750 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 313-429 chr5 45913108 45913283 + 2 NA Intergenic ALR/Alpha|Satellite|centr -216815 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 232-137 chr17 76478207 76478431 + 2 NA intron (NM_024599, intron 6 of 18) L2c|LINE|L2 9590 NM_001005498 79651 Hs.464157 NM_024599 ENSG00000129667 RHBDF2 RHBDL5|RHBDL6|TEC|TOC|TOCG|iRhom2 rhomboid 5 homolog 2 protein-coding 236-306 chr6 86865462 86865668 + 2 NA Intergenic L1M3b|LINE|L1 -71963 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 519-259 chr9 119775260 119775615 + 2 NA Intergenic Intergenic -159623 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 269-50 chr10 92522624 92522805 + 2 NA intron (NR_136399, intron 4 of 25) MIRb|SINE|MIR -24953 NM_001165946 3416 Hs.500546 NM_004969 ENSG00000119912 IDE INSULYSIN insulin degrading enzyme protein-coding 236-264 chr4 122835341 122835507 + 2 NA intron (NM_001361665, intron 1 of 2) intron (NM_001361665, intron 1 of 2) 8593 NM_001361665 2247 Hs.284244 NM_002006 ENSG00000138685 FGF2 BFGF|FGF-2|FGFB|HBGF-2 fibroblast growth factor 2 protein-coding 485-69 chr13 86548392 86548715 + 2 NA Intergenic Intergenic -363367 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 285-162 chr18 8465658 8465812 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -98701 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 210-152 chr2 240543747 240543886 + 2 NA intron (NR_148698, intron 3 of 5) LOR1-int|LTR|ERV1 14172 NM_017844 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 438-93 chr17 56362023 56362457 + 2 NA intron (NM_001370326, intron 6 of 20) intron (NM_001370326, intron 6 of 20) 208765 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 204-227 chr4 174712204 174712346 + 2 NA intron (NM_006529, intron 5 of 9) intron (NM_006529, intron 5 of 9) 116972 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 447-199 chr4 96455216 96455513 + 2 NA intron (NR_147149, intron 2 of 3) L1PA14|LINE|L1 144661 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 411-202 chr4 42943539 42943800 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 50403 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 211-145 chr2 117573745 117573909 + 2 NA Intergenic Intergenic -240864 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 299-265 chr21 40076529 40076767 + 2 NA intron (NM_001271534, intron 26 of 32) intron (NM_001271534, intron 26 of 32) 135783 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 389-396 chrX 83106436 83106773 + 2 NA Intergenic Intergenic -401686 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 227-224 chr3 26565774 26565933 + 2 NA Intergenic MER52C|LTR|ERV1 -56953 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 413-142 chr2 80948633 80948934 + 2 NA Intergenic Intergenic 518163 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 308-535 chr9 72501054 72501213 + 2 NA Intergenic AluSz|SINE|Alu -20668 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 325-59 chr10 51098306 51098468 + 2 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 23900 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 350-491 chr7 97595195 97595414 + 2 NA Intergenic ORSL|DNA|hAT-Tip100 -136782 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 373-434 chr9 80753725 80754072 + 2 NA Intergenic Intergenic 778875 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 340-352 chr3 15310041 15310306 + 2 NA intron (NM_001018009, intron 2 of 8) MLT1K|LTR|ERVL-MaLR 22413 NM_004844 9467 Hs.257761 NM_004844 ENSG00000131370 SH3BP5 SAB|SH3BP-5 SH3 domain binding protein 5 protein-coding 348-39 chr1 237372080 237372351 + 2 NA intron (NM_001035, intron 6 of 104) L1M5|LINE|L1 -98904 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 296-452 chr7 159280075 159280299 + 2 NA Intergenic Intergenic -135230 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 293-389 chr7 10134966 10135214 + 2 NA Intergenic Intergenic 500820 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 1041-9 chr20 5247194 5247853 + 2 NA Intergenic L1PB2|LINE|L1 69209 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 523-134 chr2 97738504 97738888 + 2 NA intron (NM_207519, intron 5 of 5) intron (NM_207519, intron 5 of 5) 4290 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 540-215 chr8 120555024 120555423 + 2 NA intron (NM_021021, intron 4 of 6) LTR9|LTR|ERV1 109804 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 385-171 chr2 50097327 50097553 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) -123237 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 266-331 chr5 56136572 56136729 + 2 NA intron (NM_024669, intron 7 of 11) AluJb|SINE|Alu 96680 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 306-287 chr20 55782083 55782280 + 2 NA Intergenic L1MC4|LINE|L1 223338 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 390-432 chrX 55550960 55551335 + 2 NA Intergenic Intergenic -61949 NM_201286 158880 Hs.40061 NM_201286 ENSG00000247746 USP51 - ubiquitin specific peptidase 51 protein-coding 392-293 chr6 159734703 159735014 + 2 NA intron (NM_001322817, intron 2 of 7) intron (NM_001322817, intron 2 of 7) 7352 NM_001270531 9589 Hs.446091 NM_004906 ENSG00000146457 WTAP Mum2 WT1 associated protein protein-coding 644-112 chrX 58479574 58480092 + 2 NA Intergenic ALR/Alpha|Satellite|centr -569200 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 210-237 chr5 162972207 162972367 + 2 NA Intergenic Intergenic -465284 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 324-409 chr4 164703270 164703574 + 2 NA Intergenic L1ME3B|LINE|L1 -50709 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 262-78 chr11 50797844 50797997 + 2 NA Intergenic ALR/Alpha|Satellite|centr 388773 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 243-145 chr15 87689421 87689613 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 112588 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 309-248 chr2 59915019 59915274 + 2 NA Intergenic Intergenic 467890 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 437-183 chr3 186662492 186662755 + 2 NA Intergenic HERVH-int|LTR|ERV1 -3329 NM_000412 3273 Hs.1498 NM_000412 ENSG00000113905 HRG HPRG|HRGP|THPH11 histidine rich glycoprotein protein-coding 251-126 chr17 3356071 3356216 + 2 NA Intergenic L1M1|LINE|L1 42267 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 372-84 chr11 101507226 101507452 + 2 NA intron (NM_004621, intron 1 of 12) HAL1|LINE|L1 12566 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 408-147 chr19 29515998 29516226 + 2 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 9640 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 391-266 chr4 114740982 114741188 + 2 NA Intergenic L3|LINE|CR1 84326 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 232-253 chr3 127810968 127811167 + 2 NA intron (NM_001003794, intron 2 of 7) intron (NM_001003794, intron 2 of 7) 11815 NM_007283 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 449-283 chr8 121056962 121057349 + 2 NA Intergenic Intergenic -245109 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 445-176 chr3 96491467 96491895 + 2 NA Intergenic L1PA15|LINE|L1 131717 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 259-138 chr15 69975930 69976157 + 2 NA Intergenic Intergenic 103425 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 260-9 chr1 97098267 97098479 + 2 NA intron (NR_046590, intron 1 of 4) intron (NR_046590, intron 1 of 4) 2450 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 284-299 chr4 147728414 147728639 + 2 NA Intergenic L2a|LINE|L2 -3562 NM_024605 79658 Hs.368631 NM_024605 ENSG00000071205 ARHGAP10 GRAF2|PS-GAP|PSGAP Rho GTPase activating protein 10 protein-coding 310-196 chr18 6461833 6462029 + 2 NA Intergenic L1MB5|LINE|L1 -46672 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 281-390 chr6 67090108 67090273 + 2 NA Intergenic Intergenic -965161 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 293-400 chr7 34690540 34690731 + 2 NA intron (NM_001300934, intron 2 of 6) L1PB4|LINE|L1 32396 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 273-208 chr2 30667802 30668010 + 2 NA Intergenic L1MCc|LINE|L1 139540 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 503-251 chr6 166512101 166512552 + 2 NA intron (NM_001006932, intron 4 of 21) L1MB4|LINE|L1 -2893 NR_031734 100302141 NR_031734 ENSG00000222958 MIR1913 MIRN1913|hsa-mir-1913 microRNA 1913 ncRNA 234-31 chr10 25308819 25308981 + 2 NA intron (NM_020752, intron 2 of 10) L1MB3|LINE|L1 -132624 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 304-463 chr6 68134116 68134299 + 2 NA Intergenic MLT2B3|LTR|ERVL 78856 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 148-63 chr4 67513636 67513730 + 2 NA intron (NR_155754, intron 8 of 18) L2c|LINE|L2 31820 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 317-104 chr12 15108624 15108786 + 2 NA 3' UTR (NM_001190726, exon 4 of 4) 3' UTR (NM_001190726, exon 4 of 4) -43218 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 375-78 chr11 80749104 80749405 + 2 NA Intergenic Intergenic 13549 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 131-23 chr14 58944202 58944302 + 2 NA intron (NR_110547, intron 3 of 5) MIR|SINE|MIR 115964 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 392-175 chr20 39520022 39520350 + 2 NA Intergenic Intergenic -295438 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 251-356 chr6 165020277 165020473 + 2 NA Intergenic Intergenic -198312 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 480-139 chr2 42890871 42891172 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -98438 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 311-194 chr17 26792769 26792962 + 2 NA Intergenic Intergenic 296376 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 190-54 chr14 33921322 33921460 + 2 NA Intergenic Intergenic 29683 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 377-136 chr15 68950456 68950824 + 2 NA intron (NM_001184780, intron 1 of 15) L1MC1|LINE|L1 20115 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 277-300 chr4 172690889 172691039 + 2 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) -2047 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 209-324 chr8 91733606 91733805 + 2 NA Intergenic Intergenic 283975 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 396-76 chr11 99544248 99544521 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -11761 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 209-127 chr17 70001845 70002027 + 2 NA Intergenic Intergenic 40229 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 219-253 chr4 37082592 37082743 + 2 NA Intergenic L1MB7|LINE|L1 80888 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 458-270 chr9 9630006 9630367 + 2 NA intron (NM_002839, intron 7 of 45) intron (NM_002839, intron 7 of 45) -169206 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 338-518 chr7 122860900 122861173 + 2 NA intron (NM_001167940, intron 1 of 29) L1MA6|LINE|L1 25424 NM_001363398 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 202-230 chr6 169537194 169537349 + 2 NA intron (NR_146875, intron 19 of 20) L2a|LINE|L2 164758 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 168-103 chr7 28837668 28837805 + 2 NA Intergenic Intergenic 120594 NM_014817 9865 Hs.744120 NM_014817 ENSG00000255690 TRIL - TLR4 interactor with leucine rich repeats protein-coding 143-37 chr19 37141918 37142018 + 2 NA Intergenic Intergenic 30468 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 696-107 chr8 101599338 101599846 + 2 NA intron (NM_024915, intron 8 of 15) intron (NM_024915, intron 8 of 15) 107153 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 301-262 chr21 30191597 30191849 + 2 NA Intergenic Intergenic 20060 NR_038855 266919 Hs.561028 NR_038855 ENSG00000227342 LINC00307 D21S2091E|NCRNA00307 long intergenic non-protein coding RNA 307 ncRNA 450-122 chr18 79833051 79833482 + 2 NA Intergenic AluJb|SINE|Alu -30402 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 196-117 chr2 23086896 23087079 + 2 NA Intergenic Intergenic -298192 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 626-32 chr12 18773686 18774108 + 2 NA Intergenic L1ME3C|LINE|L1 35778 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 204-99 chr15 54741154 54741344 + 2 NA Intergenic L1M2|LINE|L1 -315498 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 283-298 chr3 108418297 108418532 + 2 NA intron (NM_014981, intron 29 of 41) Charlie1a|DNA|hAT-Charlie 106629 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 461-88 chr15 95141599 95141932 + 2 NA Intergenic Intergenic 185335 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 462-235 chr5 129012893 129013200 + 2 NA intron (NM_001017372, intron 4 of 9) L1ME3|LINE|L1 47558 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 337-10 chr1 75028970 75029284 + 2 NA Intergenic L1MB7|LINE|L1 -99307 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 114-15 chr14 41987551 41987622 + 2 NA Intergenic Intergenic 380730 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 295-202 chr2 24858193 24858470 + 2 NA intron (NM_001320613, intron 3 of 21) MER102b|DNA|hAT-Charlie 61906 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 331-248 chr2 19279401 19279587 + 2 NA Intergenic L1PA8|LINE|L1 -68935 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 493-113 chr17 74690414 74690892 + 2 NA intron (NM_175738, intron 1 of 8) L5|LINE|RTE-X 19522 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 292-335 chr5 7360414 7360615 + 2 NA Intergenic Intergenic -12537 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 624-100 chr5 62291106 62291579 + 2 NA Intergenic AluY|SINE|Alu -14820 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 503-48 chr11 23305622 23306071 + 2 NA Intergenic MIRb|SINE|MIR 113344 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 582-39 chr14 68947988 68948385 + 2 NA intron (NM_001102, intron 1 of 20) intron (NM_001102, intron 1 of 20) 31116 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 419-59 chr11 115007108 115007380 + 2 NA Intergenic L2a|LINE|L2 -326333 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 337-138 chr13 77426040 77426325 + 2 NA Intergenic Intergenic -99088 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 322-518 chr8 63899683 63899947 + 2 NA intron (NR_125826, intron 4 of 4) L2a|LINE|L2 130385 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 295-311 chr3 143740545 143740721 + 2 NA intron (NM_173653, intron 4 of 15) intron (NM_173653, intron 4 of 15) 107835 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 419-225 chr5 21581215 21581490 + 2 NA intron (NR_027026, intron 4 of 4) MLT1D|LTR|ERVL-MaLR 121872 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 380-273 chr4 33871457 33871832 + 2 NA Intergenic Intergenic 168249 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 241-292 chr5 22809375 22809583 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 43865 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 370-315 chr3 109173990 109174261 + 2 NA Intergenic L1PA11|LINE|L1 -4040 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 504-209 chr5 37962286 37962661 + 2 NA Intergenic Intergenic 13982 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 206-95 chr18 2898475 2898654 + 2 NA intron (NM_032048, intron 4 of 7) intron (NM_032048, intron 4 of 7) 48059 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 228-232 chr3 192005448 192005617 + 2 NA Intergenic MER127|DNA|TcMar-Tigger -233098 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 321-66 chr10 80394276 80394462 + 2 NA Intergenic Intergenic -13460 NM_001243779 84293 Hs.500333 NM_032333 ENSG00000122378 PRXL2A Adrx|C10orf58|FAM213A|PAMM peroxiredoxin like 2A protein-coding 342-77 chr10 91127722 91127908 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 25265 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 166-86 chr4 69998491 69998594 + 2 NA intron (NM_001009181, intron 2 of 4).2 intron (NM_001009181, intron 2 of 4).2 2576 NM_001009181 6779 Hs.654495 NM_003154 ENSG00000126549 STATH STR statherin protein-coding 226-74 chr12 84299139 84299296 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 613582 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 230-351 chr7 48768463 48768637 + 2 NA Intergenic Intergenic -155997 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 424-262 chr7 72121134 72121440 + 2 NA intron (NM_001363460, intron 2 of 5) (TTATATA)n|Simple_repeat|Simple_repeat 216104 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 375-469 chrX 102022789 102023005 + 2 NA Intergenic L1M3c|LINE|L1 -90870 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 388-279 chr5 56978175 56978398 + 2 NA Intergenic MIR|SINE|MIR -26156 NM_001297598 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 423-220 chr5 42268353 42268742 + 2 NA Intergenic L1PREC2|LINE|L1 -93202 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 365-110 chr13 58085646 58085883 + 2 NA Intergenic Intergenic -80063 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 304-90 chr11 105022707 105022946 + 2 NA intron (NM_001136112, intron 1 of 9) intron (NM_001136112, intron 1 of 9) 342 NR_036562 838 Hs.213327 NM_004347 ENSG00000137757 CASP5 ICE(rel)III|ICEREL-III|ICH-3 caspase 5 protein-coding 500-44 chr11 9404042 9404476 + 2 NA intron (NM_006391, intron 2 of 24) AluY|SINE|Alu 19607 NM_006391 10527 Hs.744911 NM_006391 ENSG00000205339 IPO7 Imp7|RANBP7 importin 7 protein-coding 247-306 chr4 115704220 115704416 + 2 NA Intergenic L2a|LINE|L2 -590698 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 293-163 chr18 39697129 39697329 + 2 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) -20452 NR_049848 100846997 NR_049848 ENSG00000283645 MIR5583-2 - microRNA 5583-2 ncRNA 250-438 chr8 106826178 106826388 + 2 NA Intergenic Intergenic -56039 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 327-218 chr19 7080575 7080821 + 2 NA intron (NM_024341, intron 5 of 7) L1MB5|LINE|L1 10995 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 574-114 chr3 163879734 163880090 + 2 NA Intergenic Intergenic 291644 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 326-325 chr3 22512320 22512549 + 2 NA Intergenic L1MA2|LINE|L1 555295 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 298-276 chr22 26203316 26203557 + 2 NA intron (NM_001184776, intron 1 of 14) L2c|LINE|L2 33962 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 359-295 chr21 27254551 27254752 + 2 NA Intergenic Intergenic -287563 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 281-235 chr2 164100252 164100522 + 2 NA Intergenic Intergenic -364379 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 478-52 chr11 133676235 133676586 + 2 NA Intergenic Intergenic 133966 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 680-71 chr2 239860336 239860854 + 2 NA Intergenic L1MDa|LINE|L1 82499 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 396-86 chr12 48496762 48497117 + 2 NA TTS (NM_152319) TTS (NM_152319) 14441 NM_152319 121273 Hs.98202 NM_152319 ENSG00000177627 C12orf54 HSD-29|HSD-30 chromosome 12 open reading frame 54 protein-coding 535-7 chr1 52226158 52226588 + 2 NA intron (NM_007324, intron 2 of 17) AluSx|SINE|Alu 84279 NM_004799 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 256-117 chr14 38082703 38082858 + 2 NA Intergenic Intergenic -125124 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 230-205 chr20 39313512 39313711 + 2 NA Intergenic MIRb|SINE|MIR -88863 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 303-230 chr2 174285287 174285463 + 2 NA Intergenic L1M4|LINE|L1 -36843 NM_001328688 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 335-200 chr17 53300061 53300282 + 2 NA Intergenic L1MA9|LINE|L1 314666 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 516-234 chr7 71036720 71037096 + 2 NA Intergenic L1MB3|LINE|L1 -95236 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 218-248 chr4 90957543 90957707 + 2 NA intron (NM_001145065, intron 9 of 10) (TA)n|Simple_repeat|Simple_repeat 722594 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 307-148 chr14 76616163 76616337 + 2 NA Intergenic MER21C|LTR|ERVL -145218 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 528-239 chr7 71354731 71355090 + 2 NA intron (NM_022479, intron 2 of 10) L1MC4|LINE|L1 -47140 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 360-365 chr5 58299359 58299701 + 2 NA Intergenic Intergenic 160556 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 551-136 chr4 91436937 91437405 + 2 NA intron (NM_001145065, intron 10 of 10) L3|LINE|CR1 840131 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 418-135 chr2 216948553 216948910 + 2 NA Intergenic L1ME3D|LINE|L1 77959 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 259-79 chr11 99156822 99157035 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 135979 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 548-236 chr8 104303067 104303448 + 2 NA Intergenic L2|LINE|L2 -36539 NM_001257317 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 497-62 chr12 112661594 112662023 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 33368 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 178-120 chr6 62046990 62047102 + 2 NA intron (NR_146874, intron 3 of 13) intron (NR_146874, intron 3 of 13) 239179 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 316-307 chr2 219660637 219660851 + 2 NA Intergenic Intergenic 33114 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 233-195 chr2 188325058 188325234 + 2 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 27654 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 308-350 chr4 101581616 101581781 + 2 NA Intergenic L1M2|LINE|L1 -208909 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 409-97 chr15 91438619 91439017 + 2 NA Intergenic L1M4a1|LINE|L1 -24521 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 368-379 chr5 155115670 155116023 + 2 NA Intergenic LTR12C|LTR|ERV1 102091 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 338-597 chr9 96741852 96742044 + 2 NA Intergenic Intergenic 16127 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 354-79 chr11 43976133 43976473 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 33666 NM_001145033 387763 Hs.530443 NM_001145033 ENSG00000187479 C11orf96 AG2 chromosome 11 open reading frame 96 protein-coding 454-113 chr16 64449897 64450166 + 2 NA Intergenic L2c|LINE|L2 672032 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 337-256 chr2 67538354 67538647 + 2 NA Intergenic L1PB3|LINE|L1 141167 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 315-159 chr15 91995838 91996024 + 2 NA intron (NR_135775, intron 2 of 10) L1ME3Cz|LINE|L1 141627 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 363-471 chr9 31988779 31989037 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -395695 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 246-104 chr13 56430054 56430258 + 2 NA Intergenic L1MB4|LINE|L1 -710762 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 268-403 chr8 95512582 95512846 + 2 NA intron (NR_038207, intron 2 of 2) Zaphod3|DNA|hAT-Tip100 -243513 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 281-52 chr10 113557209 113557413 + 2 NA intron (NM_004132, intron 1 of 12) intron (NM_004132, intron 1 of 12) 4258 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 646-18 chr10 82459363 82459873 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -226698 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 272-6 chr1 57324468 57324644 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 98556 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 199-31 chr11 11800394 11800562 + 2 NA Intergenic L2a|LINE|L2 -17256 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 329-357 chr3 36002258 36002578 + 2 NA Intergenic Intergenic 257942 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 679-39 chr16 72487344 72487826 + 2 NA intron (NR_159371, intron 3 of 5) L1ME3Cz|LINE|L1 177385 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 564-157 chr5 104029236 104029729 + 2 NA Intergenic MER52-int|LTR|ERV1 -466693 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 268-413 chr8 121046574 121046806 + 2 NA Intergenic MIRb|SINE|MIR -234644 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 396-65 chr11 2062883 2063244 + 2 NA Intergenic (ATTCTCC)n|Simple_repeat|Simple_repeat -61597 NR_131224 283120 Hs.533566 NR_002196 ENSG00000130600 H19 ASM|ASM1|BWS|D11S813E|LINC00008|MIR675HG|NCRNA00008|WT2 H19 imprinted maternally expressed transcript ncRNA 430-301 chr8 19568064 19568360 + 2 NA intron (NM_001354495, intron 2 of 9) Tigger3a|DNA|TcMar-Tigger 34333 NM_001354499 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 521-71 chr12 121882639 121883126 + 2 NA intron (NM_001171993, intron 1 of 15) AluSx1|SINE|Alu 5729 NM_001171993 3242 Hs.2899 NM_002150 ENSG00000158104 HPD 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD 4-hydroxyphenylpyruvate dioxygenase protein-coding 298-413 chr6 143547576 143547784 + 2 NA Intergenic Intergenic 14371 NR_110148 285740 Hs.432656 NR_027113 ENSG00000235740 PHACTR2-AS1 - PHACTR2 antisense RNA 1 ncRNA 262-172 chr17 73982501 73982677 + 2 NA Intergenic Intergenic -154052 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 528-186 chr4 126120933 126121296 + 2 NA Intergenic Intergenic 613855 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 506-249 chr6 49025379 49025757 + 2 NA Intergenic L1PA16|LINE|L1 437685 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 370-434 chr8 51481314 51481563 + 2 NA intron (NM_144651, intron 6 of 22) THE1B-int|LTR|ERVL-MaLR 328007 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 447-27 chr10 56965258 56965588 + 2 NA Intergenic L1PA16|LINE|L1 339136 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 171-126 chr7 85408411 85408565 + 2 NA Intergenic L1ME4a|LINE|L1 -12634 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 334-552 chr8 131074437 131074621 + 2 NA Intergenic Intergenic -33620 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 116-20 chr2 81177189 81177260 + 2 NA Intergenic Intergenic 289722 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 265-46 chr10 104862773 104862953 + 2 NA intron (NM_014978, intron 2 of 26) intron (NM_014978, intron 2 of 26) -196647 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 211-322 chr9 30953858 30954019 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 427552 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 508-41 chr11 100202136 100202532 + 2 NA intron (NM_001243270, intron 14 of 23) intron (NM_001243270, intron 14 of 23) -484954 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 241-263 chr4 46217533 46217721 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -93573 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 183-51 chr15 53022081 53022174 + 2 NA Intergenic L1ME3B|LINE|L1 -94238 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 192-103 chr2 126071588 126071761 + 2 NA Intergenic HERVL-int|LTR|ERVL 46311 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 422-122 chr18 8620857 8621238 + 2 NA intron (NM_001025300, intron 1 of 5) intron (NM_001025300, intron 1 of 5) 11602 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 218-327 chr8 89288460 89288600 + 2 NA Intergenic Intergenic 469181 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 378-108 chr12 91909400 91909716 + 2 NA Intergenic L1MEf|LINE|L1 232155 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 410-10 chr1 112862087 112862434 + 2 NA Intergenic L1M5|LINE|L1 -11617 NR_103746 100996702 Hs.632431 NR_103746 ENSG00000215866 LINC01356 - long intergenic non-protein coding RNA 1356 ncRNA 295-161 chr16 7420743 7420930 + 2 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 87991 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 392-286 chr6 130495792 130496061 + 2 NA Intergenic L1ME2|LINE|L1 58809 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 379-274 chr5 111037801 111038046 + 2 NA Intergenic L1MB2|LINE|L1 -32157 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 259-428 chr9 23927119 23927364 + 2 NA Intergenic L1MEb|LINE|L1 -76640 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 270-96 chr13 60856999 60857207 + 2 NA Intergenic Intergenic 184148 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 383-410 chr9 29561619 29561853 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -348135 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 240-377 chr6 65409104 65409258 + 2 NA intron (NM_198283, intron 4 of 9) MER96|DNA|hAT-Tip100 107763 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 454-282 chr7 4419185 4419511 + 2 NA Intergenic Intergenic -262947 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 339-142 chr13 65196385 65196587 + 2 NA Intergenic Intergenic -669561 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 282-237 chr2 171252738 171252987 + 2 NA Intergenic AluSq2|SINE|Alu -21569 NM_001136554 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 449-104 chr19 33970057 33970382 + 2 NA Intergenic L1ME3Cz|LINE|L1 173349 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 302-372 chr6 38517631 38517850 + 2 NA intron (NM_001172418, intron 5 of 10) LTR16D2|LTR|ERVL 36144 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 351-103 chr12 133212579 133212885 + 2 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 23104 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 257-44 chr10 65910086 65910288 + 2 NA Intergenic Intergenic 338762 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 351-305 chr3 81948576 81948866 + 2 NA Intergenic Intergenic -37421 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 582-81 chr2 196527834 196528248 + 2 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 64942 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 161-87 chr5 83891390 83891499 + 2 NA Intergenic MIRb|SINE|MIR -170589 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 403-145 chr19 31995534 31995791 + 2 NA Intergenic L1M4a1|LINE|L1 -30200 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 349-365 chr4 31849712 31849918 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -147564 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 382-305 chr4 106494061 106494364 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger 60588 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 483-216 chr5 123846359 123846807 + 2 NA Intergenic Intergenic 301166 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 255-195 chr2 61045967 61046161 + 2 NA intron (NM_002618, intron 3 of 3) intron (NM_002618, intron 3 of 3) -19806 NM_001330434 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 195-86 chr17 77355039 77355188 + 2 NA intron (NM_006640, intron 1 of 10) intron (NM_006640, intron 1 of 10) -18224 NM_001113493 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 119-50 chr6 4157068 4157160 + 2 NA non-coding (NR_103764, exon 4 of 4) non-coding (NR_103764, exon 4 of 4) 21042 NR_103764 100507506 Hs.665936 NR_103764 ENSG00000234817 LOC100507506 - uncharacterized LOC100507506 ncRNA 436-283 chr7 37706344 37706618 + 2 NA intron (NM_001329994, intron 3 of 3) intron (NM_001329994, intron 3 of 3) 22715 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 233-28 chr10 17858312 17858521 + 2 NA intron (NM_002438, intron 9 of 29) L1MEi|LINE|L1 13309 NR_030167 574445 NR_030167 ENSG00000207938 MIR511 MIR511-1|MIR511-2|MIRN511-1|MIRN511-2|hsa-mir-511|hsa-mir-511-2|mir-511 microRNA 511 ncRNA 277-65 chr11 13038768 13039010 + 2 NA Intergenic Intergenic 29573 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 129-66 chr5 29708192 29708308 + 2 NA Intergenic AluSx3|SINE|Alu -172310 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 445-82 chr15 93411532 93411837 + 2 NA Intergenic Intergenic 205618 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 380-192 chr2 123223450 123223718 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -150103 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 406-233 chr5 95494151 95494464 + 2 NA intron (NM_014639, intron 36 of 42) intron (NM_014639, intron 36 of 42) 60698 NM_014639 9652 Hs.482868 NM_014639 ENSG00000198677 TTC37 KIAA0372|Ski3|THES tetratricopeptide repeat domain 37 protein-coding 316-481 chr6 48475139 48475377 + 2 NA Intergenic L1MA3|LINE|L1 -406569 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 455-142 chr2 225999047 225999369 + 2 NA Intergenic Intergenic -143586 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 341-12 chr1 60594688 60594974 + 2 NA intron (NR_146508, intron 3 of 7) intron (NR_146508, intron 3 of 7) 27854 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 321-503 chr6 115929773 115929943 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -108873 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 221-54 chr11 74804700 74804839 + 2 NA intron (NM_001098638, intron 2 of 5) MER6|DNA|TcMar-Tigger 55920 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 368-373 chr5 120182602 120182909 + 2 NA Intergenic L1MA1|LINE|L1 -281523 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 120-3 chr1 99492784 99492852 + 2 NA Intergenic Intergenic -5014 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 254-280 chr4 95518669 95518884 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 30197 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 503-253 chr7 3108267 3108616 + 2 NA Intergenic MIR|SINE|MIR 50132 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 343-412 chr5 9587708 9588020 + 2 NA Intergenic Intergenic 39037 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 295-107 chr12 128285229 128285424 + 2 NA intron (NM_001136103, intron 1 of 8) L1MA5|LINE|L1 -8766 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 270-71 chr12 8993796 8993972 + 2 NA intron (NR_137426, intron 2 of 3) intron (NR_137426, intron 2 of 3) 4259 NR_137428 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 371-265 chr4 15285198 15285510 + 2 NA intron (NR_125911, intron 1 of 5) L1MC1|LINE|L1 -54634 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 516-70 chr14 62616926 62617258 + 2 NA Intergenic MIRc|SINE|MIR 428366 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 223-316 chr7 34571526 34571672 + 2 NA intron (NR_033664, intron 2 of 4) L1ME4a|LINE|L1 -86619 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 365-160 chr18 4516918 4517170 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -61737 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 523-86 chr15 53906974 53907311 + 2 NA Intergenic Intergenic -71299 NM_001329919 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 455-159 chr3 17346885 17347267 + 2 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 352944 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 406-117 chr18 13146900 13147171 + 2 NA Intergenic L1MC5a|LINE|L1 -71725 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 296-480 chr8 115542918 115543119 + 2 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 124995 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 345-485 chr7 15995614 15995922 + 2 NA Intergenic L1M1|LINE|L1 -214718 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 342-407 chr5 82506747 82507064 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 227443 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 222-195 chr2 173848061 173848241 + 2 NA Intergenic L1M5|LINE|L1 115729 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 273-464 chr8 136956442 136956610 + 2 NA Intergenic LTR49|LTR|ERV1 425728 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 603-19 chr10 107442505 107442943 + 2 NA Intergenic Intergenic -278018 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 237-133 chr16 54869003 54869166 + 2 NA Intergenic Intergenic -20851 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 310-296 chr20 58086168 58086339 + 2 NA Intergenic L1PB4|LINE|L1 -64649 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 642-28 chr12 109681250 109681758 + 2 NA Intergenic L1MC3|LINE|L1 -32321 NM_032829 84915 Hs.661785 NM_032829 ENSG00000139438 FAM222A C12orf34 family with sequence similarity 222 member A protein-coding 435-61 chr12 30303770 30304077 + 2 NA Intergenic Intergenic 373321 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 470-234 chr5 177052737 177053192 + 2 NA intron (NR_131773, intron 4 of 5) intron (NR_131773, intron 4 of 5) 30268 NM_001308216 23567 Hs.484259 NM_012279 ENSG00000113761 ZNF346 JAZ|Zfp346 zinc finger protein 346 protein-coding 230-386 chr8 121991204 121991368 + 2 NA Intergenic Intergenic -349846 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 307-278 chr21 17571302 17571549 + 2 NA intron (NM_001207066, intron 7 of 7) intron (NM_001207066, intron 7 of 7) -40261 NR_149073 110806272 Hs.607138 NR_149073 ENSG00000280594 BTG3-AS1 ASBEL BTG3 antisense RNA 1 ncRNA 360-147 chr15 94551931 94552148 + 2 NA Intergenic L1ME4c|LINE|L1 196109 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 419-41 chr10 111939126 111939489 + 2 NA Intergenic Intergenic 244458 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 439-36 chr10 76260092 76260349 + 2 NA intron (NM_001305581, intron 5 of 6) L1MA5A|LINE|L1 477459 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 695-40 chr17 53444696 53445275 + 2 NA Intergenic FLAM_C|SINE|Alu -377942 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 439-56 chr11 76777181 76777428 + 2 NA Intergenic L1M4c|LINE|L1 -5009 NM_001258210 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 227-91 chr12 128538749 128538941 + 2 NA intron (NM_001136103, intron 2 of 8) HAL1|LINE|L1 244753 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 382-21 chr1 194904022 194904238 + 2 NA Intergenic L1MD|LINE|L1 1184585 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 451-54 chr13 71984993 71985310 + 2 NA Intergenic L1PA17|LINE|L1 -117947 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 205-203 chr4 61677336 61677465 + 2 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 475228 NM_001371342 442-73 chr14 40634660 40635055 + 2 NA Intergenic Intergenic -319854 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 367-313 chr4 13675525 13675828 + 2 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 20497 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 293-146 chr16 75104418 75104591 + 2 NA intron (NM_032268, intron 2 of 4) intron (NM_032268, intron 2 of 4) 12268 NM_194436 197257 Hs.380929 NM_153486 ENSG00000166816 LDHD DLACD|DLD lactate dehydrogenase D protein-coding 215-52 chr11 83603570 83603699 + 2 NA intron (NM_001142699, intron 19 of 27) L1ME3E|LINE|L1 78791 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 450-27 chr10 19062600 19062887 + 2 NA intron (NM_001142308, intron 1 of 39) L1MB2|LINE|L1 13942 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 171-8 chr1 80107053 80107154 + 2 NA Intergenic MIRb|SINE|MIR -428652 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 568-147 chr4 47625206 47625664 + 2 NA intron (NM_006587, intron 17 of 21) intron (NM_006587, intron 17 of 21) -27234 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 323-28 chr1 183602027 183602232 + 2 NA Intergenic MIRb|SINE|MIR -11215 NM_001127651 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 420-58 chr12 7402762 7403091 + 2 NA intron (NM_001297650, intron 6 of 19) AluJr|SINE|Alu 41259 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 255-156 chr17 21082556 21082749 + 2 NA intron (NR_110896, intron 1 of 1) L1MEf|LINE|L1 7096 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 364-223 chr2 125195816 125196062 + 2 NA Intergenic Intergenic 922046 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 231-331 chr7 46960917 46961110 + 2 NA Intergenic L1PA17|LINE|L1 -263891 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 325-532 chr8 29830977 29831276 + 2 NA Intergenic LTR88c|LTR|Gypsy? -2622 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 327-455 chr7 48726154 48726323 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -198309 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 1144-9 chr5 6265756 6266678 + 2 NA Intergenic Intergenic 71075 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 645-90 chr4 78699908 78700378 + 2 NA Intergenic MER41-int|LTR|ERV1 54149 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 199-77 chr16 77814958 77815128 + 2 NA intron (NM_020927, intron 1 of 8) MIR|SINE|MIR 26479 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 379-48 chr10 111767959 111768297 + 2 NA Intergenic L1M4|LINE|L1 415637 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 312-221 chr2 13460199 13460464 + 2 NA Intergenic L1MC3|LINE|L1 -453318 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 458-256 chr8 86909752 86910119 + 2 NA intron (NM_173538, intron 3 of 10) L2b|LINE|L2 43520 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 673-20 chr10 119999034 119999559 + 2 NA Intergenic L1MC|LINE|L1 40783 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 199-165 chr3 119836997 119837153 + 2 NA intron (NM_001354596, intron 9 of 9) L3b|LINE|CR1 54365 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 400-284 chr5 61787246 61787563 + 2 NA Intergenic Intergenic -51706 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 384-21 chr1 181516022 181516214 + 2 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 32601 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 216-99 chr14 66370870 66371027 + 2 NA Intergenic ERVL-int|LTR|ERVL -115423 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 326-236 chr2 35626200 35626516 + 2 NA Intergenic L1MA9|LINE|L1 154953 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 250-404 chr7 87993803 87993958 + 2 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 59629 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 459-197 chr3 123479334 123479621 + 2 NA Intergenic Intergenic -30932 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 300-151 chr17 34094605 34094808 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 62100 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 350-476 chr7 42669099 42669409 + 2 NA intron (NR_110833, intron 2 of 2) L1ME3E|LINE|L1 37193 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 226-128 chr17 68896371 68896564 + 2 NA intron (NM_001288985, intron 21 of 39) MER44C|DNA|TcMar-Tigger 58925 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 204-79 chr13 92507650 92507784 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 17554 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 363-254 chr20 34110347 34110650 + 2 NA intron (NM_003908, intron 1 of 8) MIR3|SINE|MIR 1745 NM_001316363 8894 Hs.429180 NM_003908 ENSG00000125977 EIF2S2 EIF2|EIF2B|EIF2beta|PPP1R67|eIF-2-beta eukaryotic translation initiation factor 2 subunit beta protein-coding 248-282 chr4 66472622 66472788 + 2 NA Intergenic L1PA15-16|LINE|L1 195881 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 360-336 chr4 111163663 111163872 + 2 NA Intergenic L1PA7|LINE|L1 -303120 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 610-145 chr6 50100910 50101386 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -51219 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 537-148 chr22 33714868 33715243 + 2 NA intron (NM_133642, intron 2 of 14) intron (NM_133642, intron 2 of 14) -9931 NR_038950 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 215-129 chr19 28085274 28085423 + 2 NA Intergenic L1MD1|LINE|L1 -291408 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 408-84 chr12 66185402 66185758 + 2 NA Intergenic L2b|LINE|L2 -3634 NM_001142523 11213 Hs.369265 NM_007199 ENSG00000090376 IRAK3 ASRT5|IRAKM interleukin 1 receptor associated kinase 3 protein-coding 254-407 chr8 79302269 79302475 + 2 NA Intergenic Intergenic -29816 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 510-63 chr12 107154056 107154509 + 2 NA Intergenic L2|LINE|L2 -60733 NM_004075 1407 Hs.151573 NM_004075 ENSG00000008405 CRY1 DSPD|PHLL1 cryptochrome circadian regulator 1 protein-coding 306-83 chr11 87729556 87729719 + 2 NA Intergenic MIRb|SINE|MIR -10226 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 357-199 chr2 53179380 53179706 + 2 NA Intergenic Intergenic -476928 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 347-286 chr22 27432137 27432393 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 121614 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 317-49 chr10 51830863 51831132 + 2 NA intron (NM_001098512, intron 4 of 17) Kanga2_a|DNA|TcMar-Tc2 -131402 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 267-308 chr5 7552686 7552947 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 156678 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 264-68 chr10 121938614 121938872 + 2 NA intron (NR_120495, intron 1 of 1) L1MC2|LINE|L1 -9942 NM_001288736 11101 Hs.632080 NM_007041 ENSG00000107669 ATE1 - arginyltransferase 1 protein-coding 300-22 chr1 189382086 189382383 + 2 NA Intergenic AluJo|SINE|Alu 1093776 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 222-212 chr20 58061824 58062020 + 2 NA Intergenic L1MEc|LINE|L1 58018 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 477-219 chr4 33118545 33118856 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 767662 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 282-443 chr8 77850860 77851021 + 2 NA Intergenic L1MC1|LINE|L1 400243 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 241-381 chr7 134199540 134199745 + 2 NA intron (NM_001365700, intron 14 of 15) intron (NM_001365700, intron 14 of 15) 72302 NM_001365701 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 346-165 chr15 96185931 96186213 + 2 NA intron (NR_125738, intron 3 of 4) intron (NR_125738, intron 3 of 4) -58231 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 438-161 chr22 49746627 49747000 + 2 NA Intergenic L1MB7|LINE|L1 77518 NM_001349941 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 185-147 chr4 63666926 63667067 + 2 NA Intergenic L1PREC2|LINE|L1 742454 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 394-136 chr17 65661670 65661965 + 2 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -100169 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 166-54 chr2 133796292 133796427 + 2 NA Intergenic L1MA9|LINE|L1 -227896 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 290-201 chr2 24192762 24192959 + 2 NA Intergenic MER41A|LTR|ERV1 17807 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 318-145 chr12 80318201 80318454 + 2 NA intron (NM_001368062, intron 36 of 62) intron (NM_001368062, intron 36 of 62) 108874 NM_173591 283310 Hs.723594 NM_173591 ENSG00000165899 OTOGL C12orf64|DFNB84B otogelin like protein-coding 308-485 chr8 62358940 62359244 + 2 NA intron (NM_001304533, intron 1 of 6) AluY|SINE|Alu 110238 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 300-346 chr5 11218430 11218652 + 2 NA intron (NM_001288715, intron 9 of 20) intron (NM_001288715, intron 9 of 20) 370376 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 293-7 chr1 80257015 80257230 + 2 NA Intergenic Intergenic -278633 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 335-315 chr21 29683946 29684134 + 2 NA intron (NM_001320621, intron 1 of 13) L2a|LINE|L2 -64135 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 299-177 chr18 7494739 7494940 + 2 NA Intergenic L1PA16|LINE|L1 -33833 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 181-135 chr5 152872034 152872183 + 2 NA intron (NR_109877, intron 2 of 4) L1ME1|LINE|L1 100241 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 229-90 chr12 40679391 40679564 + 2 NA Intergenic Intergenic -12962 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 316-516 chr7 49029400 49029696 + 2 NA Intergenic MER21C|LTR|ERVL 105001 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 562-38 chr11 112867793 112868168 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -93440 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 378-337 chr5 37807646 37807986 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 27006 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 176-62 chr2 115034215 115034339 + 2 NA intron (NM_001321910, intron 2 of 26) L2|LINE|L2 -30296 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 334-403 chr4 171159442 171159627 + 2 NA Intergenic HAL1b|LINE|L1 -26650 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 255-47 chr11 11053340 11053551 + 2 NA Intergenic L1MDa|LINE|L1 195228 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 156-98 chr7 44644433 44644525 + 2 NA intron (NM_002541, intron 2 of 22) intron (NM_002541, intron 2 of 22) 37852 NM_002541 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 306-306 chr3 50795732 50795912 + 2 NA intron (NM_004947, intron 2 of 52) L1PA13|LINE|L1 120742 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 261-289 chr4 91282545 91282730 + 2 NA intron (NM_001145065, intron 10 of 10) LTR84a|LTR|ERVL 994665 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 339-449 chr5 68975856 68976151 + 2 NA intron (NR_130778, intron 1 of 3) L1MA1|LINE|L1 53924 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 226-394 chrX 83906777 83906965 + 2 NA Intergenic L1ME3G|LINE|L1 45725 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 424-70 chr14 63817411 63817646 + 2 NA Intergenic Intergenic -35437 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 439-227 chr5 29916560 29916922 + 2 NA Intergenic L1PA13|LINE|L1 36181 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 261-105 chr14 61379604 61379827 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 58272 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 558-75 chr18 1877577 1878026 + 2 NA Intergenic MIR|SINE|MIR -518172 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 334-261 chr2 61029311 61029573 + 2 NA intron (NM_002618, intron 1 of 3) L1M4|LINE|L1 -11183 NM_001322127 150962 Hs.368348 NM_144709 ENSG00000162927 PUS10 CCDC139|DOBI pseudouridine synthase 10 protein-coding 537-245 chr8 32897642 32898116 + 2 NA Intergenic MamRep1151|LTR?|LTR? 176044 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 471-207 chr5 68487890 68488182 + 2 NA Intergenic L1MA9|LINE|L1 195459 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 358-229 chr2 116281469 116281726 + 2 NA Intergenic L1PA15-16|LINE|L1 937782 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 358-314 chr3 158027418 158027646 + 2 NA Intergenic Intergenic 78631 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 597-55 chr17 3024010 3024361 + 2 NA intron (NM_001330058, intron 19 of 24) L2b|LINE|L2 39422 NM_014566 8386 Hs.553508 NM_014566 ENSG00000262628 OR1D5 C17orf2|OR17-2|OR17-30|OR17-31|OR1D4 olfactory receptor family 1 subfamily D member 5 protein-coding 351-527 chrX 78165805 78166051 + 2 NA Intergenic Intergenic -26278 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 163-82 chr3 85391490 85391594 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 5832 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 302-181 chr18 13521310 13521566 + 2 NA intron (NM_181482, intron 4 of 5) intron (NM_181482, intron 4 of 5) 61491 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 393-30 chr1 240686168 240686479 + 2 NA Intergenic AluJr|SINE|Alu -74168 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 245-319 chr7 13383568 13383733 + 2 NA Intergenic Intergenic 602864 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 331-452 chr6 54874346 54874660 + 2 NA intron (NM_001010872, intron 2 of 4) intron (NM_001010872, intron 2 of 4) 27732 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 813-32 chr5 5504067 5504506 + 2 NA Intergenic L1MD1|LINE|L1 81609 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 384-209 chr21 30386870 30387242 + 2 NA Intergenic Intergenic -8975 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 233-305 chr5 78142972 78143155 + 2 NA intron (NM_003664, intron 14 of 26) intron (NM_003664, intron 14 of 26) 151635 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 367-443 chr8 43635896 43636097 + 2 NA Intergenic ALR/Alpha|Satellite|centr 343554 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 276-246 chr2 188664961 188665167 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger 125059 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 527-7 chr1 104580027 104580349 + 2 NA Intergenic HERVL-int|LTR|ERVL 507165 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 327-316 chr22 31008553 31008862 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 39496 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 312-93 chr12 1722117 1722377 + 2 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 31177 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 662-100 chr8 120271937 120272496 + 2 NA intron (NM_021110, intron 26 of 47) L1PB3|LINE|L1 147114 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 322-491 chr7 52669540 52669717 + 2 NA Intergenic Intergenic -366005 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 303-300 chr3 187975749 187975971 + 2 NA intron (NR_135537, intron 1 of 1) intron (NR_135537, intron 1 of 1) 547 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 594-69 chr2 61112057 61112473 + 2 NA intron (NM_001129993, intron 16 of 21) L1ME1|LINE|L1 32710 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 497-146 chr2 226483039 226483425 + 2 NA Intergenic Intergenic 175561 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 520-137 chr19 56525447 56525778 + 2 NA exon (NM_020813, exon 5 of 5) exon (NM_020813, exon 5 of 5) -13336 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 400-339 chr8 83032427 83032822 + 2 NA Intergenic Intergenic 120520 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 374-376 chr8 27113511 27113731 + 2 NA Intergenic L1HS|LINE|L1 -64658 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 555-112 chr20 42734225 42734638 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 48948 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 516-2 chr1 40892825 40893261 + 2 NA Intergenic AluSg4|SINE|Alu -30680 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 272-426 chr7 80174816 80175080 + 2 NA intron (NM_001256414, intron 1 of 7) Charlie1a|DNA|hAT-Charlie 39164 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 353-391 chr4 154801512 154801828 + 2 NA intron (NM_144979, intron 4 of 4) intron (NM_144979, intron 4 of 4) 20165 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 291-371 chr5 163014728 163014926 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -422744 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 325-563 chr8 139680782 139681014 + 2 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 22225 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 327-382 chr5 7131387 7131627 + 2 NA Intergenic Intergenic 137847 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 370-483 chrX 41905550 41905861 + 2 NA intron (NM_003688, intron 1 of 26) intron (NM_003688, intron 1 of 26) 17329 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 304-551 chr9 98642789 98642963 + 2 NA intron (NM_005458, intron 1 of 18) intron (NM_005458, intron 1 of 18) 66059 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 273-436 chr7 145051950 145052210 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -216027 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 190-160 chr7 701283 701416 + 2 NA intron (NM_001164760, intron 2 of 10) L1ME1|LINE|L1 11175 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 457-183 chr4 104604572 104604957 + 2 NA intron (NR_125926, intron 1 of 9) L1M3a|LINE|L1 -109870 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 297-371 chr5 62045998 62046192 + 2 NA Intergenic L1PA15|LINE|L1 -260067 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 343-114 chr12 117619936 117620227 + 2 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -258279 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 373-432 chr9 31607249 31607534 + 2 NA Intergenic Intergenic -225901 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 144-27 chr14 48510106 48510201 + 2 NA Intergenic Intergenic -715139 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 684-70 chr3 30700210 30700619 + 2 NA Intergenic Intergenic 93813 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 191-116 chr2 210892740 210892904 + 2 NA Intergenic L1PA15|LINE|L1 275251 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 350-389 chr5 25944640 25944891 + 2 NA Intergenic Intergenic 753812 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 375-284 chr4 55802686 55802930 + 2 NA Intergenic Intergenic -17195 NM_001351574 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 340-546 chr8 115062003 115062284 + 2 NA Intergenic Intergenic 605870 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 342-404 chr5 63433520 63433853 + 2 NA Intergenic Intergenic 528606 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 361-80 chr11 91621621 91621820 + 2 NA Intergenic L1ME4a|LINE|L1 -603314 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 377-122 chr14 59704927 59705290 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -58088 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 480-67 chr14 22136704 22137031 + 2 NA Intergenic Intergenic 295886 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 520-241 chr5 107708635 107708964 + 2 NA Intergenic L1ME3|LINE|L1 -37862 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 365-28 chr1 208262107 208262393 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -17866 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 336-222 chr18 5932828 5933129 + 2 NA Intergenic Intergenic -37024 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 206-109 chr2 22376287 22376442 + 2 NA Intergenic Intergenic -160115 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 557-27 chr11 4870373 4870865 + 2 NA Intergenic L2|LINE|L2 -9956 NM_001348291 401663 NM_001348291 OR51H1 OR51H1P olfactory receptor family 51 subfamily H member 1 protein-coding 459-246 chr5 124157944 124158267 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 280415 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 274-298 chr4 183610625 183610830 + 2 NA Intergenic MIRc|SINE|MIR 48458 NM_152682 201965 Hs.133337 NM_152682 ENSG00000182552 RWDD4 FAM28A|RWDD4A RWD domain containing 4 protein-coding 508-15 chr1 185425021 185425459 + 2 NA Intergenic Intergenic -90201 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 309-21 chr1 175640663 175640901 + 2 NA intron (NM_003285, intron 1 of 22) (TA)n|Simple_repeat|Simple_repeat 102813 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 325-123 chr12 20249494 20249777 + 2 NA Intergenic L1M1|LINE|L1 -119610 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 174-140 chr7 112634825 112634951 + 2 NA intron (NR_110158, intron 2 of 7) intron (NR_110158, intron 2 of 7) 12507 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 238-62 chr11 8706736 8706890 + 2 NA intron (NM_005418, intron 16 of 22) L2c|LINE|L2 21374 NR_002977 677826 Hs.745552 NR_002977 ENSG00000212607 SNORA3B ACA3-2|SNORA45|SNORA45B small nucleolar RNA, H/ACA box 3B snoRNA 245-223 chr22 40832377 40832550 + 2 NA intron (NM_003932, intron 8 of 11) intron (NM_003932, intron 8 of 11) -13064 NR_104238 10478 Hs.474938 NM_006358 ENSG00000100372 SLC25A17 PMP34 solute carrier family 25 member 17 protein-coding 662-106 chrX 6691577 6692155 + 2 NA Intergenic Intergenic -156748 NM_016379 51481 Hs.170076 NM_016379 ENSG00000169059 VCX3A VCX-8r|VCX-A|VCX3|VCX8R|VCXA variable charge X-linked 3A protein-coding 405-154 chr2 123768701 123769104 + 2 NA Intergenic Intergenic 256272 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 267-227 chr20 38942424 38942590 + 2 NA intron (NM_030919, intron 2 of 3) L1MB8|LINE|L1 16090 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 324-473 chr6 124700832 124700997 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -261631 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 537-191 chr5 30010416 30010824 + 2 NA Intergenic Intergenic 130060 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 577-22 chr10 16546757 16547175 + 2 NA Intergenic Intergenic -25087 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 322-421 chr5 41889805 41890017 + 2 NA Intergenic LTR39|LTR|ERV1 -14433 NM_175921 285636 Hs.29899 NM_175921 ENSG00000205765 C5orf51 - chromosome 5 open reading frame 51 protein-coding 215-303 chr7 104087565 104087727 + 2 NA Intergenic Intergenic -97988 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 493-108 chr17 55840407 55840824 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger 89510 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 396-105 chr14 57358762 57358984 + 2 NA Intergenic Intergenic -31713 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 288-31 chr1 199529922 199530121 + 2 NA Intergenic Intergenic 381423 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 275-401 chrX 97987165 97987314 + 2 NA Intergenic Intergenic -422704 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 306-161 chr15 37566954 37567185 + 2 NA Intergenic L1MDa|LINE|L1 -367538 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 420-180 chr3 34329563 34329845 + 2 NA Intergenic L1MA8|LINE|L1 531074 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 375-36 chr10 19282541 19282798 + 2 NA intron (NM_001142308, intron 20 of 39) intron (NM_001142308, intron 20 of 39) 233868 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 514-4 chr1 46418262 46418667 + 2 NA Intergenic MIR|SINE|MIR -15363 NR_045483 729041 Hs.170205 NR_045483 FAAHP1 FAAH-OUT|FAAHOUT|LINC00505 fatty acid amide hydrolase pseudogene 1 pseudo 254-86 chr12 79699140 79699351 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -8148 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 200-239 chr6 64422944 64423078 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 616175 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 328-230 chr19 12189497 12189815 + 2 NA 3' UTR (NM_003437, exon 4 of 4) 3' UTR (NM_003437, exon 4 of 4) -5359 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 284-282 chr4 39171464 39171678 + 2 NA Intergenic Intergenic -10958 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 465-216 chr5 24055021 24055413 + 2 NA intron (NR_131245, intron 4 of 4) L1MA3|LINE|L1 103869 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 322-347 chr3 126504421 126504689 + 2 NA intron (NM_001165974, intron 8 of 20) intron (NM_001165974, intron 8 of 20) 13218 NM_144639 131669 Hs.331148 NM_144639 ENSG00000159650 UROC1 HMFN0320|UROCD urocanate hydratase 1 protein-coding 209-32 chr10 22629452 22629583 + 2 NA intron (NM_005028, intron 1 of 9) intron (NM_005028, intron 1 of 9) 84591 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 455-86 chr15 98473440 98473723 + 2 NA intron (NM_182562, intron 4 of 6) L1ME1|LINE|L1 40755 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 576-182 chr9 99557763 99558122 + 2 NA Intergenic L1M3de|LINE|L1 -182685 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 357-65 chr11 56008340 56008537 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -13813 NM_003697 338674 Hs.553702 NM_003697 ENSG00000149133 OR5F1 OR11-10 olfactory receptor family 5 subfamily F member 1 protein-coding 611-28 chr11 130498066 130498606 + 2 NA Intergenic AluJb|SINE|Alu 49362 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 268-51 chr10 64170990 64171228 + 2 NA Intergenic CpG -649219 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 124-16 chr11 88813834 88813906 + 2 NA intron (NM_001143831, intron 2 of 8) intron (NM_001143831, intron 2 of 8) 234202 NM_001143831 2915 Hs.147361 NM_000842 ENSG00000168959 GRM5 GPRC1E|MGLUR5|PPP1R86|mGlu5 glutamate metabotropic receptor 5 protein-coding 465-255 chr6 92798734 92799048 + 2 NA Intergenic L1M4c|LINE|L1 620668 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 300-453 chr8 55157343 55157549 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 55418 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 350-17 chr1 118531344 118531663 + 2 NA Intergenic Intergenic -346275 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 422-136 chr19 43831812 43832044 + 2 NA intron (NM_001297752, intron 4 of 5) intron (NM_001297752, intron 4 of 5) 4607 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 321-157 chr13 66123682 66123899 + 2 NA Intergenic AluSx|SINE|Alu -94460 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 387-164 chr2 34252858 34253104 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 185755 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 210-227 chr5 100203779 100203962 + 2 NA Intergenic Intergenic 184384 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 387-195 chr20 13791255 13791474 + 2 NA intron (NR_147981, intron 3 of 11) MIR|SINE|MIR 6336 NR_147978 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 314-293 chr2 107620762 107620929 + 2 NA Intergenic MER41-int|LTR|ERV1 91426 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 351-437 chr7 26146341 26146531 + 2 NA Intergenic Intergenic -5762 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 351-350 chr4 72010422 72010695 + 2 NA Intergenic Intergenic -21246 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 348-235 chr2 122291216 122291452 + 2 NA Intergenic Intergenic 535683 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 374-45 chr11 19039838 19040151 + 2 NA Intergenic L1PA10|LINE|L1 20023 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 556-34 chr11 41286554 41287045 + 2 NA intron (NM_001258419, intron 1 of 6) GA-rich|Low_complexity|Low_complexity 172837 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 431-231 chr5 124366632 124366929 + 2 NA intron (NR_125774, intron 4 of 5) AluSx|SINE|Alu 71740 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 161-41 chr19 29551482 29551626 + 2 NA intron (NM_001146339, intron 4 of 4) intron (NM_001146339, intron 4 of 4) 24970 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 289-166 chr16 25985360 25985641 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -39737 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 285-25 chr10 9712676 9712944 + 2 NA Intergenic L1M3a|LINE|L1 -345912 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 350-319 chr3 103190561 103190761 + 2 NA Intergenic Intergenic 333455 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 331-211 chr18 4197735 4197921 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -66774 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 180-142 chr5 143797143 143797273 + 2 NA Intergenic MER113|DNA|hAT-Charlie -14953 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 533-114 chr2 213271523 213272000 + 2 NA Intergenic Intergenic 12448 NR_144752 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 322-585 chrX 87141632 87141865 + 2 NA Intergenic L1ME3A|LINE|L1 -376054 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 378-241 chr2 118513869 118514109 + 2 NA Intergenic L1MEg|LINE|L1 88977 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 883-33 chr5 15869593 15870174 + 2 NA intron (NM_001278317, intron 2 of 3) AluJb|SINE|Alu -65299 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 383-330 chr5 165056373 165056619 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 586217 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 325-407 chr4 109469521 109469824 + 2 NA intron (NM_001300813, intron 3 of 24) L1ME3D|LINE|L1 -19026 NR_030302 693161 NR_030302 ENSG00000207988 MIR576 MIRN576|hsa-mir-576 microRNA 576 ncRNA 429-15 chr1 154653745 154654090 + 2 NA Intergenic L1M4c|LINE|L1 -25920 NM_001365046 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 319-388 chr4 116426689 116426867 + 2 NA Intergenic Intergenic 127053 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 254-105 chr14 29425265 29425446 + 2 NA Intergenic Intergenic 501741 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 585-26 chr12 5449715 5450136 + 2 NA intron (NM_001102654, intron 1 of 1) intron (NM_001102654, intron 1 of 1) 17817 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 294-148 chr16 26162513 26162709 + 2 NA Intergenic AluSq|SINE|Alu 137374 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 160-130 chrX 46957165 46957246 + 2 NA intron (NM_014735, intron 1 of 10) intron (NM_014735, intron 1 of 10) 44784 NM_014735 9767 Hs.371977 NM_014735 ENSG00000102221 JADE3 JADE-3|PHF16 jade family PHD finger 3 protein-coding 230-41 chr10 52493530 52493674 + 2 NA Intergenic Intergenic -23069 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 378-216 chr2 21667307 21667541 + 2 NA Intergenic L2b|LINE|L2 43228 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 192-9 chr1 159939988 159940121 + 2 NA intron (NM_020789, intron 3 of 20) intron (NM_020789, intron 3 of 20) 5559 NM_020789 57549 Hs.591472 NM_020789 ENSG00000085552 IGSF9 FP18798|IGSF9A|Nrt1 immunoglobulin superfamily member 9 protein-coding 304-469 chr6 125691721 125691878 + 2 NA intron (NR_038906, intron 3 of 3) L1PB2|LINE|L1 17446 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 366-226 chr2 147600946 147601207 + 2 NA Intergenic Intergenic -243441 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 177-52 chr14 76064712 76064876 + 2 NA intron (NM_001102564, intron 5 of 8) intron (NM_001102564, intron 5 of 8) 79031 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 313-307 chr20 34962343 34962549 + 2 NA intron (NM_020884, intron 2 of 44) MER2|DNA|TcMar-Tigger -6419 NM_001322494 2937 Hs.82327 NM_000178 ENSG00000100983 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 489-98 chr16 51618491 51618817 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -143865 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 309-76 chr11 34377280 34377538 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -19399 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 431-268 chr7 50139839 50140261 + 2 NA intron (NM_001161834, intron 5 of 8) intron (NM_001161834, intron 5 of 8) 43964 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 221-76 chr13 103171129 103171304 + 2 NA Intergenic MIRb|SINE|MIR -104799 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 269-210 chr2 153226591 153226771 + 2 NA Intergenic L1MC3|LINE|L1 252081 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 314-323 chr2 221332367 221332535 + 2 NA Intergenic Intergenic 239853 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 350-447 chr6 117761346 117761572 + 2 NA Intergenic L1PA14|LINE|L1 85990 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 339-593 chr8 128188979 128189263 + 2 NA Intergenic Intergenic 39005 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 274-259 chr3 68388555 68388736 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -111992 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 307-207 chr19 353375 353558 + 2 NA Intergenic L1M7|LINE|L1 -8625 NM_001346105 54531 Hs.101891 NM_017550 ENSG00000105556 MIER2 KIAA1193|Mi-er2 MIER family member 2 protein-coding 335-445 chr5 151827984 151828219 + 2 NA intron (NM_001146040, intron 8 of 8) intron (NM_001146040, intron 8 of 8) -55925 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 233-21 chr1 209384388 209384609 + 2 NA Intergenic Intergenic 12443 NR_146491 101929476 Hs.568721 NR_146491 LINC01698 - long intergenic non-protein coding RNA 1698 ncRNA 171-55 chr2 103035321 103035433 + 2 NA Intergenic L1MA9|LINE|L1 -50948 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 313-24 chr1 162294751 162295055 + 2 NA intron (NM_001164757, intron 3 of 9) intron (NM_001164757, intron 3 of 9) -47643 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 433-62 chr12 65053451 65053877 + 2 NA intron (NM_007191, intron 9 of 9) THE1D|LTR|ERVL-MaLR -61373 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 226-168 chr2 101832464 101832631 + 2 NA intron (NM_145686, intron 7 of 30) intron (NM_145686, intron 7 of 30) 134840 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 299-72 chr10 130887848 130888015 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 74737 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 777-46 chr3 106795611 106796183 + 2 NA Intergenic L1PA16|LINE|L1 444741 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 334-315 chr21 20115936 20116245 + 2 NA Intergenic L1PBa|LINE|L1 142595 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 273-106 chr12 84641217 84641433 + 2 NA Intergenic Intergenic 271474 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 270-304 chr5 76739106 76739299 + 2 NA Intergenic Intergenic 23076 NM_001311313 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 313-466 chr6 46380836 46381081 + 2 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) -55066 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 352-573 chrX 65314671 65314938 + 2 NA Intergenic L1MEf|LINE|L1 -173931 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 423-138 chr2 115102844 115103160 + 2 NA intron (NM_001178037, intron 1 of 25) MLT1L|LTR|ERVL-MaLR 38429 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 216-7 chr1 79077383 79077567 + 2 NA Intergenic Intergenic -70745 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 421-234 chr5 42511349 42511630 + 2 NA intron (NM_001242401, intron 2 of 10) L2a|LINE|L2 -36554 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 354-57 chr10 98528623 98528856 + 2 NA intron (NM_021828, intron 9 of 11) intron (NM_021828, intron 9 of 11) -81776 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 463-257 chr6 103772706 103773104 + 2 NA Intergenic Intergenic 1086641 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 481-115 chr17 54104938 54105198 + 2 NA Intergenic L1PA16|LINE|L1 282141 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 324-216 chr17 56546403 56546671 + 2 NA Intergenic Intergenic -47162 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 276-36 chr1 228322374 228322527 + 2 NA intron (NM_052843, intron 55 of 80) MIRb|SINE|MIR 74659 NR_106800 102465444 NR_106800 ENSG00000284311 MIR6742 hsa-mir-6742 microRNA 6742 ncRNA 490-180 chr3 46460851 46461158 + 2 NA intron (NM_001321122, intron 4 of 19) L1MB8|LINE|L1 2650 NM_001199149 4057 Hs.529517 NM_002343 ENSG00000012223 LTF GIG12|HEL110|HLF2|LF lactotransferrin protein-coding 492-134 chr2 122127135 122127520 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 371676 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 398-362 chr8 115257029 115257272 + 2 NA Intergenic Intergenic 410863 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 337-308 chr20 35959104 35959426 + 2 NA Intergenic Intergenic -3906 NM_016558 51282 Hs.584909 NM_016558 ENSG00000171222 SCAND1 RAZ1|SDP1 SCAN domain containing 1 protein-coding 198-189 chr4 161477554 161477684 + 2 NA intron (NM_001128428, intron 12 of 14) L1MEd|LINE|L1 -545114 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 249-223 chr2 154498215 154498459 + 2 NA Intergenic L1ME1|LINE|L1 -40899 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 339-253 chr2 56675721 56675954 + 2 NA Intergenic Intergenic -490067 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 588-170 chr9 87319947 87320409 + 2 NA Intergenic MIR|SINE|MIR 171534 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 350-255 chr2 190887135 190887425 + 2 NA intron (NM_014905, intron 1 of 17) intron (NM_014905, intron 1 of 17) 6459 NM_014905 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 287-198 chr2 78014410 78014560 + 2 NA intron (NR_110288, intron 1 of 3) Tigger1|DNA|TcMar-Tigger -59459 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 266-241 chr3 36841913 36842087 + 2 NA intron (NM_001329998, intron 18 of 23) intron (NM_001329998, intron 18 of 23) -19500 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 246-159 chr17 73886952 73887134 + 2 NA Intergenic MER77|LTR|ERVL -58506 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 268-394 chr8 52239091 52239344 + 2 NA intron (NM_001352881, intron 2 of 2) L1MB8|LINE|L1 9427 NR_148196 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 599-49 chr18 66471682 66472082 + 2 NA Intergenic Intergenic 132208 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 345-316 chr21 18171944 18172280 + 2 NA intron (NM_001204178, intron 2 of 5) L1M4|LINE|L1 -72721 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 292-472 chrUn_KI270442v1 34596 34758 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 492-160 chr21 19643727 19644180 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 255802 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 277-210 chr2 159496832 159497082 + 2 NA intron (NM_001329858, intron 2 of 36) intron (NM_001329858, intron 2 of 36) -118337 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 705-92 chr7 33936180 33936804 + 2 NA intron (NM_133468, intron 3 of 15) intron (NM_133468, intron 3 of 15) 30953 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 347-189 chr19 29936441 29936696 + 2 NA intron (NM_001252641, intron 1 of 10) L1M4|LINE|L1 -5671 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 404-176 chr2 151358096 151358338 + 2 NA intron (NM_007115, intron 1 of 5) intron (NM_007115, intron 1 of 5) 625 NM_007115 7130 Hs.437322 NM_007115 ENSG00000123610 TNFAIP6 TSG-6|TSG6 TNF alpha induced protein 6 protein-coding 308-424 chr6 73287467 73287666 + 2 NA intron (NR_027005, intron 3 of 4) ERV3-16A3_I-int|LTR|ERVL 22593 NM_001251874 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 818-24 chr2 59761793 59762342 + 2 NA Intergenic Intergenic 544359 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 325-365 chr3 164261262 164261464 + 2 NA Intergenic MLT2D|LTR|ERVL -89807 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 300-237 chr20 24180655 24180808 + 2 NA Intergenic L2a|LINE|L2 -19036 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 282-216 chr2 96378137 96378382 + 2 NA Intergenic Tigger17|DNA|TcMar-Tigger 42493 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 200-133 chr2 77245907 77246101 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 260039 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 477-68 chr12 8547652 8548062 + 2 NA Intergenic L1M4|LINE|L1 -6952 NM_014358 26253 Hs.236516 NM_014358 ENSG00000166523 CLEC4E CLECSF9|MINCLE C-type lectin domain family 4 member E protein-coding 358-275 chr21 32209360 32209577 + 2 NA Intergenic MIRc|SINE|MIR 69581 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 571-21 chr10 80962562 80962912 + 2 NA Intergenic L1ME4b|LINE|L1 312940 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 303-114 chr14 20048032 20048199 + 2 NA Intergenic L1M4a2|LINE|L1 -11930 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 234-60 chr11 76278737 76278957 + 2 NA Intergenic Intergenic -72345 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 313-576 chrX 99872002 99872197 + 2 NA Intergenic L1MA2|LINE|L1 538174 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 150-26 chr12 18545822 18545957 + 2 NA intron (NM_001288774, intron 25 of 32) intron (NM_001288774, intron 25 of 32) 191620 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 305-117 chr12 30390972 30391154 + 2 NA Intergenic LOR1-int|LTR|ERV1 286181 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 322-473 chr6 165122405 165122566 + 2 NA Intergenic Intergenic 187120 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 427-29 chr10 98012809 98013101 + 2 NA intron (NM_001206528, intron 1 of 14) intron (NM_001206528, intron 1 of 14) 17666 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 270-126 chr15 60655065 60655312 + 2 NA intron (NM_134261, intron 2 of 10) AluSz6|SINE|Alu -26381 NR_120318 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 263-403 chr7 105808962 105809140 + 2 NA intron (NM_152749, intron 2 of 3) intron (NM_152749, intron 2 of 3) 67534 NM_020725 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 654-123 chr8 101406734 101407219 + 2 NA Intergenic L2a|LINE|L2 38083 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 263-272 chr3 189553044 189553299 + 2 NA Intergenic L1MEc|LINE|L1 -43575 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 631-97 chr4 143649664 143650223 + 2 NA intron (NM_001168235, intron 2 of 7) intron (NM_001168235, intron 2 of 7) 50732 NM_001168235 166752 Hs.252714 NM_001168235 ENSG00000183090 FREM3 - FRAS1 related extracellular matrix 3 protein-coding 254-28 chr1 233895714 233895941 + 2 NA Intergenic Intergenic -8849 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 251-167 chr2 46739318 46739485 + 2 NA intron (NM_144949, intron 1 of 1) intron (NM_144949, intron 1 of 1) 40106 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 284-429 chr9 11458777 11458977 + 2 NA Intergenic Intergenic 845671 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 351-259 chr20 22638770 22639004 + 2 NA Intergenic L1M4|LINE|L1 -31370 NR_109883 101929685 Hs.563018 NR_109883 ENSG00000237396 LNCNEF LINC01384|lncRNA-NEF lncRNA neighboring enhancer of FOXA2 ncRNA 609-117 chr6 96277537 96277975 + 2 NA Intergenic L1M6|LINE|L1 -244050 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 153-9 chr1 169231021 169231133 + 2 NA intron (NR_104229, intron 9 of 12) L2c|LINE|L2 124387 NM_001677 481 Hs.291196 NM_001677 ENSG00000143153 ATP1B1 ATP1B ATPase Na+/K+ transporting subunit beta 1 protein-coding 241-141 chr17 26831578 26831747 + 2 NA Intergenic Intergenic 257579 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 287-384 chr7 70135979 70136184 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 537606 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 301-178 chr18 67284141 67284332 + 2 NA Intergenic L1MC4|LINE|L1 202652 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 550-151 chr3 115353728 115354185 + 2 NA Intergenic L1MB8|LINE|L1 -206668 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 218-352 chr9 86835743 86835920 + 2 NA Intergenic AluSc|SINE|Alu 111675 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 210-245 chr6 61241233 61241388 + 2 NA Intergenic Intergenic -332820 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 345-179 chr15 91161249 91161574 + 2 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 59615 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 168-52 chr2 44103447 44103570 + 2 NA Intergenic Intergenic -65295 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 909-13 chr2 34062868 34063437 + 2 NA intron (NR_126403, intron 4 of 5) MER4E1|LTR|ERV1 -4074 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 544-217 chr7 92942862 92943240 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -106424 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 273-249 chr2 216760712 216760942 + 2 NA Intergenic MER31B|LTR|ERV1 -65278 NM_000599 3488 Hs.607212 NM_000599 ENSG00000115461 IGFBP5 IBP5 insulin like growth factor binding protein 5 protein-coding 257-204 chr2 122621586 122621803 + 2 NA Intergenic Intergenic 451787 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 734-28 chr18 77518446 77518980 + 2 NA Intergenic Intergenic 268865 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 420-18 chr1 181827315 181827651 + 2 NA Intergenic L1M4c|LINE|L1 234229 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 507-27 chr10 15600915 15601300 + 2 NA intron (NM_001291494, intron 19 of 28) AluSx1|SINE|Alu 118815 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 225-231 chr3 192599758 192599928 + 2 NA intron (NM_004113, intron 2 of 5) L1MC1|LINE|L1 84821 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 134-54 chr3 12621025 12621103 + 2 NA intron (NR_148942, intron 1 of 16) intron (NR_148942, intron 1 of 16) 42444 NM_001354690 5894 Hs.159130 NM_002880 ENSG00000132155 RAF1 CMD1NN|CRAF|NS5|Raf-1|c-Raf Raf-1 proto-oncogene, serine/threonine kinase protein-coding 334-244 chr2 10005286 10005474 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 38021 NR_135558 101929882 Hs.405158 NR_135558 LOC101929882 - uncharacterized LOC101929882 ncRNA 538-254 chr9 73061938 73062432 + 2 NA Intergenic MIRb|SINE|MIR -89680 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 284-360 chr6 143806315 143806556 + 2 NA intron (NM_001100165, intron 10 of 11) intron (NM_001100165, intron 10 of 11) -36838 NM_001329953 84946 Hs.185675 NM_032860 ENSG00000135521 LTV1 C6orf93|dJ468K18.4 LTV1 ribosome biogenesis factor protein-coding 555-191 chr7 122033420 122033865 + 2 NA intron (NM_001206839, intron 15 of 28) intron (NM_001206839, intron 15 of 28) 110607 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 283-325 chr4 66723591 66723849 + 2 NA Intergenic Intergenic 446896 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 363-121 chr13 66536467 66536748 + 2 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) -288562 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 362-12 chr1 65947598 65947878 + 2 NA intron (NM_002600, intron 3 of 16) MLT1C|LTR|ERVL-MaLR 34493 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 334-516 chr8 16394713 16394951 + 2 NA Intergenic Intergenic -202041 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 386-250 chr3 188923695 188924048 + 2 NA Intergenic Intergenic 23768 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 261-91 chr13 91755645 91755858 + 2 NA intron (NM_004466, intron 4 of 7) intron (NM_004466, intron 4 of 7) 357130 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 982-14 chr17 14416874 14417636 + 2 NA Intergenic MER31-int|LTR|ERV1 113515 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 380-67 chr11 63113236 63113508 + 2 NA intron (NM_001136506, intron 4 of 9) L1PA4|LINE|L1 30849 NM_173586 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 286-294 chr3 122117800 122118020 + 2 NA intron (NM_001206925, intron 4 of 5) MamTip2|DNA|hAT-Tip100 40061 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 273-289 chr3 40367216 40367451 + 2 NA Intergenic L1PA15-16|LINE|L1 -19851 NM_001291960 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 262-37 chr10 3961861 3962095 + 2 NA Intergenic LTR16|LTR|ERVL -29182 NR_106726 102464829 NR_106726 ENSG00000274809 MIR6078 hsa-mir-6078 microRNA 6078 ncRNA 282-114 chr13 66332276 66332495 + 2 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 114135 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 348-502 chr7 121079949 121080129 + 2 NA intron (NM_001105533, intron 4 of 17) intron (NM_001105533, intron 4 of 17) 90648 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 382-278 chr3 154650267 154650605 + 2 NA Intergenic Intergenic -220246 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 361-135 chr14 48757060 48757255 + 2 NA Intergenic L1M5|LINE|L1 829223 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 447-16 chr1 214291566 214291913 + 2 NA intron (NM_020197, intron 1 of 11) intron (NM_020197, intron 1 of 11) 10580 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 586-144 chr7 88837178 88837569 + 2 NA intron (NM_181646, intron 1 of 3) Charlie1a|DNA|hAT-Charlie -41636 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 180-179 chr9 88498799 88498944 + 2 NA Intergenic Intergenic -36230 NM_001161625 158046 Hs.734507 NM_145283 ENSG00000130045 NXNL2 C9orf121|RDCVF2|RdCVF2L nucleoredoxin like 2 protein-coding 286-266 chr3 17067291 17067534 + 2 NA intron (NM_015184, intron 4 of 5) intron (NM_015184, intron 4 of 5) 134216 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 324-256 chr2 51165358 51165599 + 2 NA intron (NR_135237, intron 2 of 10) L1PBa|LINE|L1 132877 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 439-26 chr10 29744463 29744843 + 2 NA Intergenic Intergenic -7717 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 162-2 chr1 35973164 35973297 + 2 NA intron (NM_177422, intron 3 of 16) intron (NM_177422, intron 3 of 16) 42125 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 257-132 chr16 27044117 27044289 + 2 NA Intergenic L1PREC2|LINE|L1 -22724 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 248-442 chrX 64963210 64963386 + 2 NA intron (NM_001178032, intron 1 of 4) L1MB1|LINE|L1 13152 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 331-372 chr4 17190280 17190523 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -4344 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 480-25 chr10 31550198 31550509 + 2 NA Intergenic AluSx1|SINE|Alu -150598 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 408-237 chr4 63913454 63913809 + 2 NA Intergenic L1MA3|LINE|L1 495819 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 183-11 chr10 25663762 25663892 + 2 NA intron (NR_108067, intron 2 of 4) L1ME1|LINE|L1 12115 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 476-43 chr10 132860159 132860486 + 2 NA intron (NM_001200049, intron 37 of 57) intron (NM_001200049, intron 37 of 57) -74175 NM_177400 84504 Hs.134013 NM_177400 ENSG00000148826 NKX6-2 GTX|NKX6.2|NKX6B|SPAX8 NK6 homeobox 2 protein-coding 222-35 chr10 55574275 55574457 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -24676 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 196-211 chr5 104510035 104510197 + 2 NA Intergenic L1M3|LINE|L1 -589358 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 440-265 chr9 75102768 75103121 + 2 NA intron (NM_012383, intron 1 of 9) intron (NM_012383, intron 1 of 9) 14430 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 600-126 chr8 67202005 67202532 + 2 NA intron (NM_006421, intron 36 of 38) AluJr|SINE|Alu 118420 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 337-376 chr3 191126666 191126930 + 2 NA Intergenic Intergenic -72443 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 256-369 chr6 143236379 143236580 + 2 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 71697 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 572-25 chr11 46833860 46834262 + 2 NA intron (NM_001008938, intron 1 of 43) AluSq2|SINE|Alu 12219 NM_001008938 9793 Hs.201253 NM_014756 ENSG00000175216 CKAP5 CHTOG|MSPS|TOG|TOGp|ch-TOG cytoskeleton associated protein 5 protein-coding 262-20 chr1 113568384 113568600 + 2 NA intron (NM_001142782, intron 2 of 20) L1ME3B|LINE|L1 177977 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 407-299 chr7 64173257 64173539 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -33805 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 338-524 chr8 18604255 18604557 + 2 NA intron (NM_015310, intron 11 of 15) MSTA-int|LTR|ERVL-MaLR 204461 NM_206909 23362 Hs.434255 NM_015310 ENSG00000156011 PSD3 EFA6D|EFA6R|HCA67 pleckstrin and Sec7 domain containing 3 protein-coding 339-464 chr5 131055843 131056159 + 2 NA Intergenic L1MA9|LINE|L1 109255 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 192-113 chr2 198523654 198523814 + 2 NA Intergenic Intergenic -148637 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 287-305 chr5 20609351 20609601 + 2 NA Intergenic Intergenic -2364 NR_149120 105374676 Hs.561423 NR_149120 ENSG00000251629 LINC02241 - long intergenic non-protein coding RNA 2241 ncRNA 219-236 chr3 83189599 83189710 + 2 NA Intergenic MER57E1|LTR|ERV1 1203512 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 270-200 chr2 212623332 212623561 + 2 NA Intergenic L1MA9|LINE|L1 -84644 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 365-253 chr3 30361767 30362063 + 2 NA Intergenic L1MC4a|LINE|L1 -156953 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 323-595 chrX 67599945 67600173 + 2 NA intron (NM_001011645, intron 2 of 8) L1ME3G|LINE|L1 55436 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 328-9 chr1 61516224 61516467 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -137897 NR_073400 414927 Hs.123471 NR_073400 MGC34796 - sepiapterin reductase (7,8-dihydrobiopterin:NADP+ oxidoreductase) pseudogene pseudo 342-397 chr5 45701978 45702247 + 2 NA Intergenic L1ME3G|LINE|L1 -5732 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 249-171 chr19 27386684 27386826 + 2 NA Intergenic ALR/Alpha|Satellite|centr -406676 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 324-311 chr20 44032798 44032984 + 2 NA intron (NM_001098797, intron 3 of 8) intron (NM_001098797, intron 3 of 8) 86995 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 343-268 chr2 123274885 123275081 + 2 NA Intergenic Intergenic -201502 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 423-26 chr10 46242084 46242486 + 2 NA intron (NR_103828, intron 2 of 2) L1M2|LINE|L1 27323 NR_103827 100996567 Hs.546758 NR_103827 ANTXRLP1 - ANTXR like pseudogene 1 pseudo 894-28 chr4 31435432 31436098 + 2 NA Intergenic L1MCa|LINE|L1 -70779 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 618-113 chr7 5074278 5074708 + 2 NA Intergenic L1ME1|LINE|L1 2433 NR_015343 389458 Hs.733005 NM_203393 ENSG00000273313 RBAKDN - RBAK downstream neighbor ncRNA 365-251 chr3 17140358 17140673 + 2 NA Intergenic Intergenic 207319 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 315-99 chr12 29424983 29425145 + 2 NA intron (NR_073172, intron 1 of 1) L3|LINE|CR1 35770 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 343-416 chr5 24696363 24696699 + 2 NA Intergenic Intergenic -51553 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 230-403 chrX 98254669 98254823 + 2 NA Intergenic L1MA6|LINE|L1 -690211 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 346-37 chr1 228261050 228261394 + 2 NA intron (NM_001271223, intron 17 of 115) AluSx|SINE|Alu -47558 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 579-4 chr1 158594542 158595055 + 2 NA Intergenic L1M4a1|LINE|L1 -11641 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 233-2 chr1 71489499 71489687 + 2 NA intron (NM_173808, intron 6 of 6) MIRb|SINE|MIR 347419 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 462-136 chr2 45540234 45540645 + 2 NA intron (NM_018079, intron 14 of 20) L1ME1|LINE|L1 70828 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 186-43 chr13 53277434 53277579 + 2 NA Intergenic MIR|SINE|MIR -125606 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 250-286 chr3 121089118 121089327 + 2 NA intron (NR_145517, intron 5 of 8) L1MD2|LINE|L1 39582 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 707-39 chr16 83066241 83066820 + 2 NA intron (NM_001220489, intron 3 of 12) MamRep605|LTR?|LTR? -76232 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 620-127 chr7 12444564 12444977 + 2 NA Intergenic Intergenic -40829 NR_144534 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 160-7 chr1 170408087 170408201 + 2 NA Intergenic Intergenic -123936 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 436-240 chr5 42794921 42795247 + 2 NA intron (NM_001134848, intron 6 of 8) L1MEg|LINE|L1 16808 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 440-9 chr1 165295103 165295459 + 2 NA intron (NM_177398, intron 3 of 8) L1ME4a|LINE|L1 60960 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 310-91 chr11 113150814 113151013 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) 122988 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 580-27 chr11 105745259 105745725 + 2 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 134786 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 547-247 chr8 122023408 122023717 + 2 NA Intergenic L1ME3D|LINE|L1 -382122 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 396-310 chr6 66540294 66540563 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger 752549 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 619-24 chr10 126728073 126728565 + 2 NA Intergenic L1ME3A|LINE|L1 -57809 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 351-158 chr16 26047530 26047762 + 2 NA intron (NM_006040, intron 1 of 1) MIRb|SINE|MIR 22409 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 282-258 chr20 4096668 4096876 + 2 NA Intergenic AluJb|SINE|Alu -52007 NM_001270691 54498 Hs.433337 NM_175839 ENSG00000088826 SMOX C20orf16|PAO|PAO-1|PAO1|PAOH|PAOH1|SMO spermine oxidase protein-coding 555-52 chr14 27181323 27181828 + 2 NA Intergenic Intergenic 272933 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 303-356 chr5 52699824 52700097 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -87956 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 452-207 chr5 18163621 18163957 + 2 NA Intergenic L1M4|LINE|L1 356515 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 317-174 chr15 95916054 95916315 + 2 NA Intergenic Intergenic 211657 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 261-310 chr5 61897268 61897518 + 2 NA Intergenic Intergenic -161695 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 260-169 chr17 49240806 49240967 + 2 NA Intergenic Intergenic -7357 NR_034161 124871 Hs.446890 NM_001007529 ENSG00000177369 FLJ40194 - uncharacterized FLJ40194 ncRNA 260-120 chr13 69218811 69219028 + 2 NA Intergenic Intergenic -3427 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 309-209 chr17 77614286 77614445 + 2 NA Intergenic AluSz|SINE|Alu 67424 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 322-341 chr3 110471564 110471758 + 2 NA Intergenic Intergenic 598298 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 261-252 chr3 118247655 118247874 + 2 NA Intergenic Intergenic -394004 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 154-105 chr8 92344778 92344886 + 2 NA Intergenic Intergenic -241447 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 295-479 chr8 117373307 117373519 + 2 NA Intergenic Intergenic -147300 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 269-20 chr1 163163398 163163626 + 2 NA intron (NR_110699, intron 2 of 3) intron (NR_110699, intron 2 of 3) 1837 NR_110699 101928404 Hs.683933 NR_110699 ENSG00000232892 LOC101928404 - uncharacterized LOC101928404 ncRNA 454-304 chr8 46468226 46468520 + 2 NA Intergenic ALR/Alpha|Satellite|centr 149270 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 192-22 chr10 57561662 57561819 + 2 NA Intergenic L1MA2|LINE|L1 -257181 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 277-245 chr22 44513198 44513359 + 2 NA Intergenic L1MEd|LINE|L1 -15045 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 528-34 chr10 60184102 60184457 + 2 NA intron (NM_001204403, intron 18 of 43) intron (NM_001204403, intron 18 of 43) -43263 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 282-406 chr6 88087430 88087625 + 2 NA Intergenic Intergenic 39686 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 412-116 chr16 80837472 80837837 + 2 NA intron (NR_131948, intron 2 of 2) intron (NR_131948, intron 2 of 2) -33056 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 126-44 chr4 36985941 36986011 + 2 NA Intergenic L1ME1|LINE|L1 -15803 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 395-354 chr9 75444194 75444507 + 2 NA Intergenic L1PREC2|LINE|L1 355836 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 228-104 chr14 85858616 85858772 + 2 NA Intergenic MER66D|LTR|ERV1 -75984 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 322-69 chr10 78172418 78172651 + 2 NA Intergenic Intergenic -76091 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 211-38 chr10 76389845 76389997 + 2 NA intron (NM_001305581, intron 6 of 6) L1MB3|LINE|L1 -498123 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 288-433 chr8 43654418 43654645 + 2 NA Intergenic ALR/Alpha|Satellite|centr 362089 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 210-309 chr9 28046057 28046226 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -472275 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 249-385 chr7 62803141 62803309 + 2 NA Intergenic ALR/Alpha|Satellite|centr 500831 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 394-334 chr8 127148140 127148445 + 2 NA Intergenic LOR1-int|LTR|ERV1 49335 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 308-405 chr5 165509841 165510113 + 2 NA Intergenic L1M4|LINE|L1 1039698 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 462-173 chr3 29865212 29865493 + 2 NA intron (NM_001003792, intron 6 of 13) X7A_LINE|LINE|CR1 68804 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 273-69 chr11 14942566 14942769 + 2 NA Intergenic Intergenic 29619 NM_001033953 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 311-345 chr3 74753608 74753793 + 2 NA Intergenic Intergenic -232560 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 269-406 chr8 84433892 84434128 + 2 NA intron (NM_001354308, intron 2 of 9) MLT1B|LTR|ERVL-MaLR 18526 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 530-270 chr9 24376094 24376396 + 2 NA Intergenic MER57A-int|LTR|ERV1 169431 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 310-73 chr11 13564658 13564943 + 2 NA Intergenic MIRc|SINE|MIR -68625 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 290-200 chr2 21745789 21745972 + 2 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -35228 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 598-30 chr11 83840168 83840651 + 2 NA intron (NM_001142699, intron 16 of 27) intron (NM_001142699, intron 16 of 27) -157984 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 406-264 chr6 149190928 149191225 + 2 NA Intergenic L1MEc|LINE|L1 -26848 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 391-22 chr1 192129135 192129438 + 2 NA Intergenic Intergenic -29176 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 160-112 chr7 125121334 125121442 + 2 NA intron (NR_125718, intron 6 of 10) intron (NR_125718, intron 6 of 10) -63181 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 299-95 chr12 5533971 5534141 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie 39924 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 283-72 chr11 15268721 15268976 + 2 NA Intergenic Intergenic 119746 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 333-137 chr13 106133745 106134017 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -242683 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 308-448 chr7 7179922 7180137 + 2 NA Intergenic Intergenic -2586 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 327-329 chr3 67682433 67682687 + 2 NA intron (NR_109992, intron 3 of 6) AluJb|SINE|Alu 27863 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 325-6 chr1 29352487 29352787 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -2523 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 334-72 chr10 109460990 109461245 + 2 NA Intergenic Intergenic 462129 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 583-164 chr8 117533261 117533663 + 2 NA intron (NM_080651, intron 3 of 3) HAL1|LINE|L1 12749 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 276-4 chr1 34759420 34759638 + 2 NA promoter-TSS (NM_153212) promoter-TSS (NM_153212) -211 NM_153212 127534 Hs.351203 NM_153212 ENSG00000189433 GJB4 CX30.3|EKV|EKVP2 gap junction protein beta 4 protein-coding 483-190 chr4 117706661 117706956 + 2 NA Intergenic L1PA16|LINE|L1 -127593 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 370-97 chr11 100145317 100145608 + 2 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -541826 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 341-396 chr4 126479465 126479785 + 2 NA Intergenic HUERS-P2-int|LTR|ERV1 972366 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 256-401 chr7 137430684 137430856 + 2 NA intron (NM_001321710, intron 28 of 32) intron (NM_001321710, intron 28 of 32) -87037 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 383-321 chr5 89402173 89402500 + 2 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -498231 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 402-352 chr8 126235752 126236039 + 2 NA Intergenic L1MD1|LINE|L1 -89600 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 344-198 chr18 3686105 3686443 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 82537 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 716-50 chr3 99761123 99761571 + 2 NA intron (NM_001850, intron 3 of 4) MIR|SINE|MIR -56515 NM_032359 84319 Hs.581320 NM_032359 ENSG00000184220 CMSS1 C3orf26 cms1 ribosomal small subunit homolog protein-coding 313-90 chr11 99955202 99955482 + 2 NA intron (NM_001243270, intron 6 of 23) intron (NM_001243270, intron 6 of 23) 399197 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 555-71 chr17 58630528 58630946 + 2 NA intron (NM_031272, intron 2 of 31) intron (NM_031272, intron 2 of 31) 61318 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 637-121 chr8 139579556 139579981 + 2 NA Intergenic L1MC3|LINE|L1 123355 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 584-176 chr8 139611249 139611780 + 2 NA non-coding (NR_104210, exon 3 of 4) non-coding (NR_104210, exon 3 of 4) 91609 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 393-201 chr20 64280915 64281252 + 2 NA Intergenic L1MB5|LINE|L1 -9302 NR_040415 140849 Hs.745565 NR_040415 LINC00266-1 C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3 long intergenic non-protein coding RNA 266-1 ncRNA 383-370 chr8 33954776 33955062 + 2 NA Intergenic L1PREC2|LINE|L1 -354813 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 262-191 chr2 12934845 12935064 + 2 NA Intergenic Intergenic 72059 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 281-381 chr5 173367560 173367770 + 2 NA Intergenic Intergenic 20210 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 519-52 chr12 128125245 128125687 + 2 NA Intergenic Intergenic 7249 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 253-65 chr11 15334490 15334706 + 2 NA Intergenic Intergenic 185496 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 346-475 chr8 9090243 9090564 + 2 NA intron (NM_001354638, intron 7 of 7) L1ME4c|LINE|L1 -31773 NR_145772 109616996 NR_145772 SNORD3I - small nucleolar RNA, C/D box 3I snoRNA 347-295 chr3 8001907 8002207 + 2 NA intron (NR_110131, intron 1 of 3) intron (NR_110131, intron 1 of 3) 14250 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 615-124 chr6 97617863 97618323 + 2 NA intron (NR_110757, intron 2 of 4) intron (NR_110757, intron 2 of 4) 312507 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 518-240 chr5 94836436 94836899 + 2 NA intron (NM_001002796, intron 17 of 22) intron (NM_001002796, intron 17 of 22) 217998 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 219-26 chr1 239225711 239225873 + 2 NA Intergenic L1M2|LINE|L1 -160776 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 396-258 chr4 116902116 116902452 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 183292 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 274-96 chr12 51598524 51598724 + 2 NA intron (NM_001369788, intron 1 of 25) L1ME4b|LINE|L1 7388 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 241-267 chr4 63030275 63030453 + 2 NA Intergenic Intergenic -868599 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 378-227 chr2 68723660 68723918 + 2 NA Intergenic Intergenic -11022 NM_001166277 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 393-168 chr2 101508143 101508468 + 2 NA Intergenic AluJr|SINE|Alu -33193 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 304-219 chr18 78928963 78929199 + 2 NA Intergenic L1M4|LINE|L1 -51194 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 296-385 chr5 152809141 152809360 + 2 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) 163099 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 523-76 chr14 43588440 43588791 + 2 NA Intergenic L1M5|LINE|L1 918668 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 381-137 chr17 40523848 40524206 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie -22404 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 314-411 chr4 32891775 32891959 + 2 NA Intergenic Intergenic 540829 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 183-65 chr18 33690391 33690563 + 2 NA intron (NM_030632, intron 8 of 11) intron (NM_030632, intron 8 of 11) 112258 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 290-454 chr8 104222176 104222454 + 2 NA intron (NM_001348498, intron 20 of 24) L2a|LINE|L2 -1020 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 327-12 chr1 95733064 95733376 + 2 NA Intergenic Intergenic 223104 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 408-29 chr1 213352250 213352588 + 2 NA Intergenic Intergenic 301178 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 240-25 chr1 201282614 201282787 + 2 NA promoter-TSS (NM_000299) promoter-TSS (NM_000299) -752 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 251-68 chr12 58440770 58440970 + 2 NA Intergenic Intergenic -150832 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 290-219 chr2 128097604 128097797 + 2 NA intron (NR_027671, intron 2 of 40) intron (NR_027671, intron 2 of 40) 6500 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 244-232 chr3 97086550 97086783 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 272072 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 532-56 chr12 127778106 127778614 + 2 NA Intergenic Intergenic -103257 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 528-173 chr4 25291974 25292413 + 2 NA Intergenic AluJb|SINE|Alu -20581 NM_001318148 29063 Hs.278945 NM_024936 ENSG00000168228 ZCCHC4 HSPC052|ZGRF4 zinc finger CCHC-type containing 4 protein-coding 319-435 chr5 159491556 159491772 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -25388 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 579-15 chr10 61111047 61111562 + 2 NA Intergenic Intergenic 95029 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 324-9 chr1 42518242 42518503 + 2 NA intron (NM_001355227, intron 6 of 18) L1MB3|LINE|L1 -14648 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 309-311 chr20 59376274 59376553 + 2 NA Intergenic Intergenic 75802 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 404-286 chr7 15923175 15923559 + 2 NA Intergenic L1M3|LINE|L1 234989 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 228-386 chrX 105277880 105278056 + 2 NA intron (NM_017416, intron 5 of 10) intron (NM_017416, intron 5 of 10) -57275 NM_001291277 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 358-145 chr16 53553575 53553849 + 2 NA Intergenic AluJr|SINE|Alu -50408 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 219-343 chr7 110713861 110714024 + 2 NA intron (NM_001350963, intron 5 of 5) L1PA16|LINE|L1 -377064 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 352-522 chr8 53093227 53093464 + 2 NA Intergenic L1PB1|LINE|L1 153437 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 280-45 chr10 20172886 20173131 + 2 NA intron (NM_032812, intron 7 of 13) intron (NM_032812, intron 7 of 13) 356576 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 530-145 chr2 211654041 211654412 + 2 NA intron (NM_001042599, intron 16 of 26) intron (NM_001042599, intron 16 of 26) 772134 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 236-186 chr2 146093837 146093965 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -493156 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 546 chr1 50085275 50085754 + 2 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) -18395 NM_001144776 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 432-157 chr20 43865374 43865756 + 2 NA Intergenic L1ME3Cz|LINE|L1 -29153 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 575-191 chr8 5765749 5766125 + 2 NA Intergenic L1M4a1|LINE|L1 640611 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 305-188 chr16 76583007 76583203 + 2 NA Intergenic Intergenic -51893 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 352-371 chr4 77374329 77374574 + 2 NA Intergenic Intergenic -137302 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 296-468 chr8 100067254 100067530 + 2 NA intron (NM_001286693, intron 4 of 25) intron (NM_001286693, intron 4 of 25) 38234 NM_001286693 26166 Hs.120021 NM_015668 ENSG00000132554 RGS22 CT145|PRTD-NY2 regulator of G protein signaling 22 protein-coding 248-197 chr2 112151710 112151857 + 2 NA intron (NM_001128165, intron 1 of 6) intron (NM_001128165, intron 1 of 6) 13398 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 540-196 chr7 52935762 52936111 + 2 NA Intergenic L2|LINE|L2 -99697 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 553-149 chr22 49225358 49225697 + 2 NA Intergenic L1MB7|LINE|L1 317939 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 515-88 chr17 63944300 63944674 + 2 NA intron (NM_000334, intron 21 of 23) MIRb|SINE|MIR -12156 NM_021602 974 Hs.89575 NM_000626 ENSG00000007312 CD79B AGM6|B29|IGB CD79b molecule protein-coding 310-152 chr15 26242619 26242786 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 126889 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 349-415 chr5 62704474 62704667 + 2 NA Intergenic Intergenic 125751 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 327-98 chr11 114101370 114101647 + 2 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 38297 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 255-26 chr10 43542523 43542736 + 2 NA Intergenic Intergenic 25830 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 293-211 chr2 172999398 172999595 + 2 NA intron (NM_001282901, intron 10 of 24) Tigger12|DNA|TcMar-Tigger 71291 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 239-267 chr4 8827520 8827726 + 2 NA Intergenic L1MC1|LINE|L1 44216 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 207-71 chr13 73025488 73025632 + 2 NA Intergenic Intergenic -29416 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 195-175 chr4 154976091 154976220 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 194650 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 342-29 chr1 117739800 117740010 + 2 NA Intergenic Intergenic 133857 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 211-211 chr4 91157401 91157584 + 2 NA intron (NM_001145065, intron 10 of 10) (ATTTGAT)n|Simple_repeat|Simple_repeat 922461 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 343-435 chr5 87345315 87345497 + 2 NA intron (NM_022650, intron 6 of 24) intron (NM_022650, intron 6 of 24) -21778 NR_130929 644285 Hs.709256 NR_130929 LOC644285 - uncharacterized LOC644285 ncRNA 374-15 chr1 164892387 164892591 + 2 NA Intergenic Intergenic -117848 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 944-2 chr1 77435498 77436113 + 2 NA intron (NM_012093, intron 8 of 13) MER65-int|LTR|ERV1 152718 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 268-158 chr18 6576649 6576822 + 2 NA intron (NR_120518, intron 3 of 5) intron (NR_120518, intron 3 of 5) 65319 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 598-91 chr3 140340313 140340747 + 2 NA intron (NM_022131, intron 2 of 16) L1MC3|LINE|L1 168259 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 205-15 chr1 118163091 118163238 + 2 NA intron (NM_206996, intron 1 of 48) intron (NM_206996, intron 1 of 48) 22064 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 348-83 chr11 58117151 58117371 + 2 NA intron (NM_001005212, intron 2 of 2) MIRb|SINE|MIR 2183 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 225-305 chr6 39019236 39019393 + 2 NA intron (NM_001371, intron 90 of 91) L2b|LINE|L2 -29467 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 320-19 chr1 93954773 93955011 + 2 NA Intergenic L1MA4A|LINE|L1 -45294 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 300-32 chr10 16589850 16590004 + 2 NA TTS (NM_012425) TTS (NM_012425) -68048 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 254-388 chr7 109274403 109274624 + 2 NA Intergenic L1MA10|LINE|L1 -389926 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 170-100 chr3 160834329 160834464 + 2 NA intron (NM_139245, intron 1 of 3) L1PA10|LINE|L1 -7753 NM_001317911 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 399-173 chr2 208125478 208125764 + 2 NA intron (NR_038437, intron 1 of 2) intron (NR_038437, intron 1 of 2) -1097 NM_006891 1421 Hs.546247 NM_006891 ENSG00000118231 CRYGD CACA|CCA3|CCP|CRYG4|CTRCT4|PCC|cry-g-D crystallin gamma D protein-coding 334-579 chr9 124839565 124839766 + 2 NA Intergenic Intergenic -13752 NM_001276374 401551 Hs.343383 NM_001045476 ENSG00000136918 WDR38 - WD repeat domain 38 protein-coding 434-106 chr17 31285657 31286023 + 2 NA intron (NM_001042492, intron 36 of 57) MARNA|DNA|TcMar-Mariner 11399 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 270-3 chr1 13971563 13971773 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 222253 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 295-226 chr2 138408643 138408920 + 2 NA Intergenic L1MA10|LINE|L1 -92989 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 264-191 chr2 8001363 8001515 + 2 NA Intergenic Intergenic -24625 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 527-148 chr2 193737740 193738144 + 2 NA Intergenic L1M1|LINE|L1 -606327 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 327-350 chr3 189855968 189856277 + 2 NA intron (NM_003722, intron 4 of 13) intron (NM_003722, intron 4 of 13) 26200 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 310-16 chr1 114668586 114668806 + 2 NA intron (NM_001256404, intron 1 of 20) intron (NM_001256404, intron 1 of 20) 1353 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 445-102 chr18 23493051 23493388 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -10251 NM_001318708 29919 Hs.464779 NM_013326 ENSG00000141452 RMC1 C18orf8|HsT2591|MIC1|Mic-1|WDR98 regulator of MON1-CCZ1 protein-coding 339-153 chr14 48373861 48374132 + 2 NA Intergenic Intergenic -578982 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 226-351 chr8 101383267 101383431 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 14456 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 700-93 chr6 141015804 141016364 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 332270 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 635-27 chr14 44540734 44541267 + 2 NA Intergenic L1P3|LINE|L1 33591 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 258-110 chr13 85953422 85953635 + 2 NA Intergenic Intergenic -154109 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 568-181 chr7 3735701 3736251 + 2 NA intron (NM_152744, intron 4 of 44) L1MB2|LINE|L1 -393709 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 402-239 chr4 85125050 85125332 + 2 NA Intergenic L1PB1|LINE|L1 157707 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 309-399 chr4 80641768 80642009 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 306168 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 298-355 chr5 24191797 24191961 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 240531 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 308-11 chr1 72824240 72824421 + 2 NA Intergenic L1MEc|LINE|L1 -481840 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 327-245 chr2 30868038 30868322 + 2 NA Intergenic Intergenic -60734 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 561-52 chr12 130499061 130499541 + 2 NA intron (NM_001351226, intron 4 of 21) MLT1H2|LTR|ERVL-MaLR 129155 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 353-209 chr18 35006096 35006394 + 2 NA intron (NM_001143827, intron 2 of 7) intron (NM_001143827, intron 2 of 7) 27877 NM_001143827 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 364-79 chr10 131122312 131122668 + 2 NA intron (NM_174937, intron 8 of 11) MER21C|LTR|ERVL 27272 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 135-54 chr5 7339162 7339260 + 2 NA Intergenic L1MB8|LINE|L1 8766 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 427-41 chr11 124149996 124150352 + 2 NA Intergenic L1MCa|LINE|L1 34724 NM_001130142 4013 Hs.152944 NM_014622 ENSG00000110002 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 305-114 chr12 22569321 22569587 + 2 NA Intergenic FLAM_C|SINE|Alu -24908 NM_001286173 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 361-444 chr8 82619467 82619772 + 2 NA Intergenic L2a|LINE|L2 -292485 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 203-156 chr3 165733092 165733249 + 2 NA Intergenic L1MEc|LINE|L1 104253 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 386-348 chr8 66546646 66546875 + 2 NA Intergenic AluJr|SINE|Alu 53194 NM_152765 254778 Hs.268869 NM_152765 ENSG00000169085 VXN C8orf46 vexin protein-coding 318-291 chr2 152834100 152834323 + 2 NA Intergenic AluJb|SINE|Alu 115574 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 426-78 chr15 23941880 23942104 + 2 NA Intergenic L1MD3|LINE|L1 -33155 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 236-81 chr12 17977019 17977201 + 2 NA Intergenic Intergenic 113083 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 316-146 chr12 118915287 118915598 + 2 NA Intergenic Intergenic -66099 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 177-149 chr7 31303329 31303466 + 2 NA Intergenic Intergenic 37329 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 223-109 chr16 62490789 62490999 + 2 NA Intergenic L1MC3|LINE|L1 -454456 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 184-185 chr9 105479918 105480075 + 2 NA intron (NM_001287191, intron 5 of 13) intron (NM_001287191, intron 5 of 13) 31962 NM_001330739 83856 Hs.136901 NM_031919 ENSG00000106701 FSD1L CCDC10|CSDUFD1|FSD1CL|FSD1NL|MIR1 fibronectin type III and SPRY domain containing 1 like protein-coding 283-184 chr17 66546486 66546653 + 2 NA intron (NM_002737, intron 3 of 16) MLT1C|LTR|ERVL-MaLR -129715 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 491-160 chr22 43698596 43698913 + 2 NA intron (NM_198856, intron 8 of 29) intron (NM_198856, intron 8 of 29) 113551 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 291-338 chr4 187322326 187322558 + 2 NA intron (NR_038931, intron 1 of 4) intron (NR_038931, intron 1 of 4) -48206 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 321-202 chr15 91645745 91646059 + 2 NA Intergenic Intergenic 182563 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 289-111 chr12 78950223 78950428 + 2 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) 85551 NM_005639 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 301-7 chr1 88214519 88214669 + 2 NA Intergenic Intergenic -469550 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 258-335 chr5 148756556 148756750 + 2 NA Intergenic L1MA10|LINE|L1 -69940 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 318-11 chr1 49480677 49480851 + 2 NA intron (NR_136623, intron 2 of 12) L1PA12|LINE|L1 -8679 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 264-315 chr5 25847536 25847708 + 2 NA Intergenic Intergenic 656669 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 526-243 chr8 43671305 43671761 + 2 NA Intergenic ALR/Alpha|Satellite|centr 379091 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 235-118 chr15 92640042 92640228 + 2 NA intron (NM_207446, intron 1 of 2) L1MD|LINE|L1 15640 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 431-245 chr6 55015434 55015788 + 2 NA Intergenic Intergenic -90849 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 297-391 chr5 171257412 171257634 + 2 NA intron (NM_022897, intron 24 of 27) L1MA4A|LINE|L1 -51725 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 190-125 chr3 118857722 118857862 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -46959 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 352-373 chr4 81989175 81989468 + 2 NA Intergenic MER34B|LTR|ERV1 384670 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 308-287 chr3 15805818 15806026 + 2 NA intron (NM_015199, intron 1 of 27) intron (NM_015199, intron 1 of 27) -7738 NR_146111 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 327-49 chr10 54847673 54847871 + 2 NA intron (NM_001354404, intron 4 of 34) L2a|LINE|L2 -46481 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 407-142 chr2 80677364 80677713 + 2 NA Intergenic Intergenic 364159 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 770-24 chr16 24265471 24265952 + 2 NA intron (NM_006539, intron 1 of 3) MER58D|DNA|hAT-Charlie 10158 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 379-295 chr6 68887390 68887752 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 252289 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 212-215 chr3 99027668 99027846 + 2 NA Intergenic L1M3f|LINE|L1 -126062 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 424-208 chr4 171699771 171700081 + 2 NA Intergenic L1ME3Cz|LINE|L1 -61163 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 383-246 chr3 43157661 43157857 + 2 NA Intergenic MIRc|SINE|MIR -51680 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 371-293 chr4 164334273 164334485 + 2 NA intron (NM_001166373, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 48876 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 335-464 chr6 56095128 56095443 + 2 NA intron (NM_030820, intron 17 of 29) intron (NM_030820, intron 17 of 29) -3623 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 213-176 chr3 43059422 43059577 + 2 NA Intergenic L1MD|LINE|L1 46580 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 271-284 chr3 165950446 165950643 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -113121 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 113-41 chr5 143675735 143675802 + 2 NA Intergenic Intergenic -4092 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 273-281 chr3 5749125 5749289 + 2 NA Intergenic Intergenic -498952 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 387-260 chr4 130945524 130945866 + 2 NA Intergenic Intergenic 569334 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 259-367 chr7 36451873 36452108 + 2 NA intron (NM_001284302, intron 22 of 22) intron (NM_001284302, intron 22 of 22) -61633 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 385-124 chr16 60146137 60146500 + 2 NA Intergenic Intergenic 213475 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 336-187 chr16 6555665 6555917 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -218018 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 612-52 chr18 66851516 66852082 + 2 NA Intergenic L1MEf|LINE|L1 -229785 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 552-58 chr14 51922110 51922506 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -3737 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 364-333 chr5 19202911 19203261 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 683186 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 459-79 chr14 43638354 43638742 + 2 NA Intergenic LTR33B|LTR|ERVL 868735 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 256-365 chr6 95399876 95400040 + 2 NA Intergenic Intergenic 177493 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 334-342 chr3 48527470 48527670 + 2 NA intron (NM_001317135, intron 9 of 13) MLT1C-int|LTR|ERVL-MaLR 22451 NR_106881 102465494 NR_106881 ENSG00000278799 MIR6823 hsa-mir-6823 microRNA 6823 ncRNA 319-546 chr8 120663745 120663927 + 2 NA intron (NM_021021, intron 2 of 6) intron (NM_021021, intron 2 of 6) -97417 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 271-167 chr17 65485560 65485740 + 2 NA Intergenic Intergenic 28109 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 199-168 chr3 155693997 155694128 + 2 NA intron (NM_001349252, intron 2 of 24) intron (NM_001349252, intron 2 of 24) 10202 NM_014996 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 361-433 chr8 34107910 34108105 + 2 NA Intergenic Intergenic -507901 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 934-12 chr13 26328036 26328622 + 2 NA intron (NM_001318368, intron 1 of 12) Charlie10|DNA|hAT-Charlie 74200 NM_001346501 1024 Hs.382306 NM_001260 ENSG00000132964 CDK8 K35 cyclin dependent kinase 8 protein-coding 490-192 chr4 22152530 22152936 + 2 NA Intergenic L1MA3|LINE|L1 186933 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 403-188 chr22 36654304 36654563 + 2 NA intron (NM_006078, intron 1 of 3) AluJb|SINE|Alu 48425 NM_006078 10369 Hs.146766 NM_006078 ENSG00000166862 CACNG2 MRD10 calcium voltage-gated channel auxiliary subunit gamma 2 protein-coding 671-14 chr11 17398250 17398774 + 2 NA intron (NR_147094, intron 29 of 37) intron (NR_147094, intron 29 of 37) -9166 NM_001166290 3767 Hs.248141 NM_000525 ENSG00000187486 KCNJ11 BIR|HHF2|IKATP|KIR6.2|MODY13|PHHI|TNDM3 potassium voltage-gated channel subfamily J member 11 protein-coding 360-380 chr5 132977106 132977376 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie -13607 NM_014423 27125 Hs.519313 NM_014423 ENSG00000072364 AFF4 AF5Q31|CHOPS|MCEF AF4/FMR2 family member 4 protein-coding 215-38 chr10 76571796 76571963 + 2 NA Intergenic L1MEf|LINE|L1 -316165 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 501-242 chr7 62919911 62920287 + 2 NA Intergenic ALR/Alpha|Satellite|centr 383957 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 271-101 chr12 58722109 58722346 + 2 NA intron (NR_120452, intron 1 of 7) MLT2A2|LTR|ERVL 59489 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 259-270 chr3 187331180 187331362 + 2 NA Intergenic AluJo|SINE|Alu -37114 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 505-139 chr2 41343810 41344137 + 2 NA Intergenic Intergenic -533582 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 385-389 chr8 124005970 124006299 + 2 NA intron (NR_040044, intron 4 of 5) intron (NR_040044, intron 4 of 5) 34648 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 446-246 chr5 103734651 103735031 + 2 NA Intergenic Intergenic -172052 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 295-403 chr6 47456350 47456560 + 2 NA Intergenic MIRb|SINE|MIR -21334 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 283-131 chr14 62414977 62415154 + 2 NA Intergenic L1MD2|LINE|L1 -275092 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 585-62 chr18 72210111 72210581 + 2 NA Intergenic LTR12C|LTR|ERV1 333996 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 446-204 chr3 165864732 165865159 + 2 NA Intergenic Intergenic -27522 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 202-238 chr7 37760697 37760859 + 2 NA Intergenic Intergenic 77012 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 285-201 chr2 79959395 79959596 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -92912 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 496-308 chr9 107646207 107646561 + 2 NA Intergenic AluSz6|SINE|Alu -156615 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 148-82 chr6 165468672 165468800 + 2 NA intron (NM_006661, intron 4 of 22) intron (NM_006661, intron 4 of 22) -159131 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 359-221 chr2 29669136 29669401 + 2 NA intron (NM_004304, intron 3 of 28) L1MA4|LINE|L1 -193891 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 258-406 chr8 115169015 115169197 + 2 NA Intergenic L1MB3|LINE|L1 498907 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 377-212 chr2 116566516 116566841 + 2 NA Intergenic L1MA1|LINE|L1 1222863 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 433-139 chr2 125992308 125992554 + 2 NA Intergenic L1MA3|LINE|L1 125554 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 295-468 chr8 84976894 84977063 + 2 NA Intergenic Intergenic -130260 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 340-418 chr4 127161309 127161578 + 2 NA Intergenic Intergenic -471514 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 348-272 chr20 58478980 58479180 + 2 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 35858 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 588-139 chr6 116822941 116823375 + 2 NA intron (NM_148963, intron 1 of 5) MSTA-int|LTR|ERVL-MaLR 5899 NM_148963 222545 Hs.266745 NM_148963 ENSG00000173612 GPRC6A GPCR|bA86F4.3 G protein-coupled receptor class C group 6 member A protein-coding 291-131 chr14 71265501 71265696 + 2 NA Intergenic L1M4a1|LINE|L1 -54878 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 741-60 chr6 49901028 49901441 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -24138 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 350-381 chr5 10949499 10949781 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -188406 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 268-357 chr6 162250480 162250676 + 2 NA intron (NM_004562, intron 3 of 11) L1MC5a|LINE|L1 -476554 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 351-327 chr3 195213406 195213705 + 2 NA intron (NM_152531, intron 2 of 3) AluSp|SINE|Alu 34365 NM_001308069 152002 Hs.478741 NM_152531 ENSG00000173950 XXYLT1 C3orf21 xyloside xylosyltransferase 1 protein-coding 319-365 chr4 45700859 45701151 + 2 NA Intergenic Intergenic 423049 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 456-75 chr13 46906559 46906845 + 2 NA Intergenic L1M7|LINE|L1 -9626 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 502-209 chr5 8299457 8299867 + 2 NA Intergenic MIRb|SINE|MIR 157902 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 383-82 chr12 70467283 70467626 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 101164 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 231-4 chr1 29790638 29790841 + 2 NA Intergenic Intergenic 246873 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 351-445 chr7 41236068 41236413 + 2 NA Intergenic Intergenic 134636 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 352-92 chr12 9101077 9101385 + 2 NA intron (NM_000014, intron 12 of 35) intron (NM_000014, intron 12 of 35) 14998 NM_001347425 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 450-87 chr14 72377142 72377534 + 2 NA intron (NM_001370288, intron 3 of 16) L1MA5A|LINE|L1 -139482 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 383-97 chr13 59270884 59271230 + 2 NA Intergenic L3|LINE|CR1 -741661 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 241-378 chr7 113230071 113230275 + 2 NA Intergenic L1MC|LINE|L1 -111591 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 256-69 chr11 59994738 59994912 + 2 NA intron (NR_130719, intron 8 of 8) intron (NR_130719, intron 8 of 8) -28978 NM_001368161 107987155 NM_001368161 ENSG00000255393 OOSP4B - oocyte secreted protein family member 4B protein-coding 364-247 chr20 50092436 50092630 + 2 NA intron (NM_022442, intron 2 of 3) MER20|DNA|hAT-Charlie 20617 NM_001257395 7335 Hs.420529 NM_021988 ENSG00000244687 UBE2V1 CIR1|CROC-1|CROC1|UBE2V|UEV-1|UEV1|UEV1A ubiquitin conjugating enzyme E2 V1 protein-coding 325-70 chr10 74717657 74717884 + 2 NA Intergenic L1MA8|LINE|L1 -107485 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 248-173 chr2 17417917 17418090 + 2 NA Intergenic L1MA5|LINE|L1 100437 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 387-244 chr4 19428059 19428388 + 2 NA Intergenic L1M4|LINE|L1 -823682 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 828-10 chr10 111938432 111939083 + 2 NA Intergenic L1MEf|LINE|L1 245008 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 196-194 chr4 158326829 158326982 + 2 NA Intergenic L1ME3F|LINE|L1 116419 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 365-38 chr10 17178945 17179247 + 2 NA intron (NM_004412, intron 1 of 10) intron (NM_004412, intron 1 of 10) 22576 NM_001321006 1787 Hs.351665 NM_004412 ENSG00000107614 TRDMT1 DMNT2|DNMT2|MHSAIIP|PUMET|RNMT1 tRNA aspartic acid methyltransferase 1 protein-coding 293-239 chr21 28906830 28906986 + 2 NA Intergenic MIRb|SINE|MIR -21535 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 593-156 chr8 132054653 132055035 + 2 NA intron (NM_001080399, intron 2 of 13) intron (NM_001080399, intron 2 of 13) 4538 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 163 chr1 46380835 46380951 + 2 NA Intergenic MIR|SINE|MIR -13424 NM_001441 2166 Hs.720143 NM_001441 ENSG00000117480 FAAH FAAH-1|PSAB fatty acid amide hydrolase protein-coding 348-17 chr1 112522894 112523085 + 2 NA TTS (NM_138727) TTS (NM_138727) 14024 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 429-259 chr6 130473012 130473243 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 36010 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 403-63 chr12 15302616 15302986 + 2 NA Intergenic L1MA3|LINE|L1 -19707 NM_030667 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 663-5 chr1 112192769 112193294 + 2 NA Intergenic L1MCa|LINE|L1 202495 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 268-160 chr18 13699716 13699894 + 2 NA intron (NM_001098801, intron 1 of 4) intron (NM_001098801, intron 1 of 4) 26753 NM_001098801 125228 Hs.13034 NM_152352 ENSG00000177150 FAM210A C18orf19|HsT2329 family with sequence similarity 210 member A protein-coding 365-333 chr5 130091530 130091738 + 2 NA intron (NM_175856, intron 2 of 2) MIRb|SINE|MIR 187169 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 268-206 chr2 125751939 125752161 + 2 NA Intergenic Intergenic 365935 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 338-62 chr10 59585157 59585467 + 2 NA Intergenic MIRb|SINE|MIR 124579 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 161-29 chr14 76689165 76689267 + 2 NA Intergenic Intergenic -72252 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 633-16 chr10 96868294 96868791 + 2 NA intron (NM_001170766, intron 2 of 8) AluSx3|SINE|Alu 35597 NM_032440 84458 Hs.427927 NM_015652 ENSG00000196233 LCOR C10orf12|MLR2 ligand dependent nuclear receptor corepressor protein-coding 320-397 chr4 107080934 107081149 + 2 NA Intergenic L1M4a1|LINE|L1 -44728 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 515-177 chr4 46448128 46448550 + 2 NA Intergenic Intergenic -58211 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 326-106 chr11 86539092 86539375 + 2 NA intron (NM_001014811, intron 3 of 13) intron (NM_001014811, intron 3 of 13) 132965 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 352-239 chr2 76773169 76773375 + 2 NA intron (NR_146416, intron 1 of 1) MER67D|LTR|ERV1 -212693 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 258-102 chr13 31379741 31379992 + 2 NA Intergenic Intergenic 179891 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 715-85 chr8 64157881 64158468 + 2 NA intron (NR_125826, intron 2 of 4) intron (NR_125826, intron 2 of 4) 210384 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 291-345 chr5 44700974 44701250 + 2 NA Intergenic L1MC4|LINE|L1 107681 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 311-365 chr4 14997560 14997833 + 2 NA intron (NR_038857, intron 3 of 7) AluSz|SINE|Alu 4349 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-DT CPEB2-AS1 CPEB2 divergent transcript ncRNA 175-47 chr14 46003922 46004032 + 2 NA Intergenic (TTATCAT)n|Simple_repeat|Simple_repeat -60182 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 334-129 chr13 78511868 78512119 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -84129 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 182-23 chr10 66236752 66236918 + 2 NA intron (NM_001127384, intron 13 of 17) AluJo|SINE|Alu 665410 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 316-7 chr1 40182593 40182843 + 2 NA intron (NM_012421, intron 1 of 7) L3|LINE|CR1 21331 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 376-364 chr7 9979125 9979484 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 345034 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 574-14 chr10 83160573 83160984 + 2 NA Intergenic Intergenic 516311 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 294-429 chr7 22359373 22359632 + 2 NA Intergenic Intergenic -2348 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 315-287 chr21 20989388 20989598 + 2 NA Intergenic AluSz|SINE|Alu -8916 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 158-87 chr4 126712794 126712907 + 2 NA Intergenic Intergenic -920107 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 249-69 chr11 28861892 28862123 + 2 NA Intergenic Intergenic -384459 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 303-176 chr18 61837464 61837707 + 2 NA intron (NM_173557, intron 1 of 1) intron (NM_173557, intron 1 of 1) 55422 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 190-121 chr3 60918930 60919081 + 2 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) -301135 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 333-257 chr2 115537665 115537926 + 2 NA intron (NM_001321912, intron 6 of 25) MLT1F|LTR|ERVL-MaLR 193980 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 615 chr1 31865497 31865856 + 2 NA Intergenic AluSz|SINE|Alu -49625 NM_144569 90853 Hs.62604 NM_144569 ENSG00000134668 SPOCD1 PPP1R146 SPOC domain containing 1 protein-coding 548-98 chr18 36059489 36059954 + 2 NA intron (NM_001303411, intron 1 of 7) L1MC5|LINE|L1 7838 NM_001303412 55197 Hs.464912 NM_018170 ENSG00000141425 RPRD1A HsT3101|P15RS regulation of nuclear pre-mRNA domain containing 1A protein-coding 519-14 chr1 220447337 220447820 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -80558 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 602-2 chr1 33557827 33558245 + 2 NA intron (NM_001281956, intron 54 of 70) intron (NM_001281956, intron 54 of 70) 85391 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 137-72 chr5 65030172 65030268 + 2 NA Intergenic Intergenic 261290 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 223-287 chr5 123788282 123788453 + 2 NA Intergenic Intergenic 242950 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 492-260 chr8 78209431 78209867 + 2 NA Intergenic Intergenic -306691 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 369-349 chr6 14809172 14809538 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -436714 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 234-164 chr2 49055838 49056015 + 2 NA intron (NM_000145, intron 2 of 9) L1M2c|LINE|L1 -3677 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 384-310 chr5 173480481 173480747 + 2 NA Intergenic Intergenic -99020 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 296-341 chr4 73751487 73751674 + 2 NA Intergenic Intergenic 11011 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 151-82 chr7 147294647 147294755 + 2 NA intron (NM_014141, intron 7 of 22) AluSq|SINE|Alu 83420 NR_031645 100313895 NR_031645 ENSG00000221442 MIR548F4 MIR548F-4|MIRN548F4|hsa-mir-548f-4 microRNA 548f-4 ncRNA 526-210 chr6 39973955 39974299 + 2 NA Intergenic HAL1ME|LINE|L1 -39665 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 229-297 chr5 39869408 39869608 + 2 NA Intergenic L1P4|LINE|L1 -182783 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 323-52 chr10 43937252 43937435 + 2 NA intron (NR_033846, intron 2 of 7) intron (NR_033846, intron 2 of 7) 24941 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 545-198 chr6 4762452 4762797 + 2 NA intron (NM_001368125, intron 3 of 8) L1MEg|LINE|L1 -13780 NM_001368126 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 230-308 chr5 114757689 114757858 + 2 NA intron (NR_130785, intron 1 of 12) MER5A|DNA|hAT-Charlie 15640 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 234-81 chr12 125732906 125733136 + 2 NA Intergenic Intergenic 110569 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 200-81 chr14 97569438 97569628 + 2 NA intron (NR_110166, intron 4 of 4) L2a|LINE|L2 110717 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 252-376 chr6 99179253 99179411 + 2 NA Intergenic L1ME3|LINE|L1 54723 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 201-39 chr10 129009373 129009533 + 2 NA Intergenic Intergenic 96620 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 283-350 chr5 23402543 23402727 + 2 NA Intergenic Intergenic -104974 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 265-90 chr13 61025485 61025699 + 2 NA Intergenic Intergenic 174288 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 401-117 chr16 13726065 13726340 + 2 NA Intergenic MER41B|LTR|ERV1 -193955 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 494-135 chr2 128385683 128386018 + 2 NA Intergenic Intergenic -66982 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 352-292 chr20 60503195 60503399 + 2 NA Intergenic Intergenic 25186 NR_039758 100616362 NR_039758 ENSG00000266140 MIR4533 - microRNA 4533 ncRNA 342-210 chr19 33896980 33897268 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 100254 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 312-378 chr4 87322005 87322219 + 2 NA intron (NM_178135, intron 1 of 6) intron (NM_178135, intron 1 of 6) 770 NM_178135 345275 Hs.284414 NM_178135 ENSG00000170509 HSD17B13 HMFN0376|NIIL497|SCDR9|SDR16C3 hydroxysteroid 17-beta dehydrogenase 13 protein-coding 248-400 chr8 77171478 77171661 + 2 NA Intergenic Intergenic -170525 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 459-121 chr19 6981782 6982193 + 2 NA intron (NR_024075, intron 4 of 15) MADE1|DNA|TcMar-Mariner 8859 NR_024075 326342 Hs.688043 NM_001080498 ENSG00000268758 ADGRE4P EMR4|EMR4P|FIRE|GPR127|PGR16 adhesion G protein-coupled receptor E4, pseudogene pseudo 421-314 chr8 138098904 138099141 + 2 NA Intergenic Intergenic -15477 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 312-513 chr8 65457176 65457366 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 105395 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 431-39 chr10 52399260 52399622 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 55831 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 269-110 chr14 27871888 27872099 + 2 NA Intergenic L1PA13|LINE|L1 -198772 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 518-204 chr4 67866103 67866521 + 2 NA intron (NM_004262, intron 1 of 9) L1PB4|LINE|L1 17690 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 473-25 chr1 240674074 240674539 + 2 NA Intergenic Intergenic -62151 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 520-220 chr4 119687332 119687730 + 2 NA Intergenic Intergenic -58727 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 407-38 chr10 101088492 101088817 + 2 NA TTS (NR_130722) TTS (NR_130722) 22355 NR_135068 81621 Hs.534859 NM_030929 ENSG00000107821 KAZALD1 BONO1|FKSG28|FKSG40|IGFBP-rP10 Kazal type serine peptidase inhibitor domain 1 protein-coding 497-23 chr10 65709854 65710270 + 2 NA intron (NR_120647, intron 4 of 5) Tigger1|DNA|TcMar-Tigger 138637 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 562-26 chr10 104361907 104362285 + 2 NA exon (NM_001008723, exon 3 of 18) exon (NM_001008723, exon 3 of 18) 8263 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 466-180 chr3 191817472 191817786 + 2 NA Intergenic L1ME3Cz|LINE|L1 356466 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 585-152 chr7 49392458 49392845 + 2 NA Intergenic Intergenic -380987 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 290-258 chr21 27126258 27126425 + 2 NA Intergenic Intergenic -159253 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 327-520 chr9 31767734 31767957 + 2 NA Intergenic L1ME4b|LINE|L1 -386355 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 430-273 chr6 153211109 153211352 + 2 NA Intergenic MER3|DNA|hAT-Charlie -79948 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 433-36 chr11 21589396 21589653 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -603561 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 291-335 chr4 168800733 168800945 + 2 NA intron (NM_001166108, intron 10 of 21) L1ME3B|LINE|L1 -31256 NM_001367568 23022 Hs.151220 NM_016081 ENSG00000129116 PALLD CGI-151|CGI151|MYN|PNCA1|SIH002 palladin, cytoskeletal associated protein protein-coding 598-111 chr5 117246145 117246577 + 2 NA Intergenic Intergenic -169151 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 510-176 chr21 30033036 30033537 + 2 NA Intergenic Intergenic -93234 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 316-595 chr9 135427007 135427309 + 2 NA Intergenic L1M7|LINE|L1 45091 NR_038969 100506599 Hs.561897 NR_038969 ENSG00000225361 PPP1R26-AS1 - PPP1R26 antisense RNA 1 ncRNA 570-93 chr17 44848537 44849103 + 2 NA intron (NR_073504, intron 1 of 1) AluSp|SINE|Alu 937 NR_073504 51751 Hs.151787 NM_016438 ENSG00000131097 HIGD1B CLST11240|CLST11240-15 HIG1 hypoxia inducible domain family member 1B protein-coding 506-226 chr5 51313515 51313887 + 2 NA Intergenic L1MC1|LINE|L1 69631 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 254-166 chr18 61293736 61293953 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -39586 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 583-74 chr18 57311340 57311722 + 2 NA Intergenic MER57B1|LTR|ERV1 -41026 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 280-68 chr11 15071775 15071953 + 2 NA Intergenic Intergenic -1729 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 303-164 chr16 79235877 79236118 + 2 NA Intergenic Intergenic 364740 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 205-191 chr3 136017472 136017617 + 2 NA intron (NM_002718, intron 2 of 13) L1M4|LINE|L1 -5198 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 170-126 chr6 155458907 155459064 + 2 NA Intergenic Intergenic -3146 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 334-425 chr5 68588958 68589164 + 2 NA Intergenic Intergenic 296484 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 276-397 chr6 40027175 40027364 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -92807 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 515-157 chr3 26059874 26060237 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -186360 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 310-61 chr10 111336311 111336498 + 2 NA Intergenic Intergenic 222113 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 449-63 chr12 128714441 128714816 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 109330 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 574-104 chr3 28581368 28581881 + 2 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 6346 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 452-143 chr2 166849290 166849640 + 2 NA Intergenic L1M1|LINE|L1 -39022 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 281-250 chr2 239912556 239912744 + 2 NA intron (NR_136158, intron 8 of 10) ERV3-16A3_I-int|LTR|ERVL 30444 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 335-462 chr6 53840447 53840663 + 2 NA intron (NM_018214, intron 1 of 13) HAL1|LINE|L1 45550 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 358-79 chr11 103821465 103821698 + 2 NA Intergenic Intergenic -28325 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 244-367 chr8 84091572 84091785 + 2 NA Intergenic L1MA4|LINE|L1 -91109 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 500-254 chr6 104924395 104924777 + 2 NA Intergenic AluSc|SINE|Alu 15941 NR_046407 100113403 Hs.649249 NR_046407 ENSG00000203809 LIN28B-AS1 C6orf220|LINC00577|dJ439I14.1 LIN28B antisense RNA 1 ncRNA 399-43 chr10 94026342 94026624 + 2 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 32552 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 258-294 chr4 78104070 78104246 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) 46588 NM_001166133 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 186-77 chr2 54443261 54443374 + 2 NA Intergenic Intergenic -13010 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 455-276 chr8 83316089 83316422 + 2 NA Intergenic Intergenic -87503 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 199-36 chr11 69341615 69341730 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 47517 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 304-431 chr5 129241669 129241838 + 2 NA Intergenic L1ME4b|LINE|L1 144065 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 494-207 chr4 95470929 95471307 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 77855 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 448-59 chr12 29587474 29587818 + 2 NA intron (NM_001367875, intron 9 of 19) intron (NM_001367875, intron 9 of 19) -87953 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 386-96 chr14 54479044 54479350 + 2 NA intron (NM_004124, intron 6 of 6) intron (NM_004124, intron 6 of 6) 9783 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 216-49 chr10 126423412 126423568 + 2 NA Intergenic Intergenic -1611 NR_073453 101101772 Hs.562258 NR_073453 ENSG00000235180 LINC00601 - long intergenic non-protein coding RNA 601 ncRNA 690-104 chr8 139964412 139964813 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 135923 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 348-453 chr6 62652963 62653151 + 2 NA Intergenic LTR25-int|LTR|ERV1 -366830 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 389-192 chr2 185819080 185819360 + 2 NA intron (NM_173651, intron 19 of 22) L1MB3|LINE|L1 -19069 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 279-101 chr14 44726850 44727037 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 72183 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 552-181 chr5 156046056 156046487 + 2 NA Intergenic Intergenic -280486 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 331-239 chr19 51516957 51517138 + 2 NA TTS (NM_001245) TTS (NM_001245) 14623 NM_001177547 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 427-17 chr10 28482709 28482977 + 2 NA intron (NR_134496, intron 1 of 2) intron (NR_134496, intron 1 of 2) 12970 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 237-65 chr11 133359099 133359278 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 173313 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 299-452 chr8 88379219 88379406 + 2 NA Intergenic Intergenic -51829 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 311-151 chr14 87850419 87850644 + 2 NA Intergenic Intergenic 142651 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 278-343 chr5 83049556 83049794 + 2 NA Intergenic Intergenic 14662 NR_003139 677765 Hs.693283 NR_003139 ENSG00000238835 SCARNA18 SCARNA18A|U109 small Cajal body-specific RNA 18 ncRNA 344-182 chr17 10811401 10811602 + 2 NA intron (NR_073458, intron 3 of 3) L1MB3|LINE|L1 -7402 NR_036581 100289255 Hs.306721 NR_036581 ENSG00000263429 TMEM238L LINC00675 transmembrane protein 238 like ncRNA 156-107 chr8 119637958 119638106 + 2 NA intron (NM_001330600, intron 2 of 25) intron (NM_001330600, intron 2 of 25) 807 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 201-155 chr3 68488746 68488877 + 2 NA intron (NM_001252216, intron 3 of 4) MIR|SINE|MIR -11826 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 535-86 chr15 57286619 57287014 + 2 NA 3' UTR (NM_001322151, exon 21 of 21) 3' UTR (NM_001322151, exon 21 of 21) -8159 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 235-282 chr5 51538771 51538919 + 2 NA Intergenic L1MCa|LINE|L1 155397 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 310-301 chr21 16358506 16358741 + 2 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -60580 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 297-17 chr1 88433703 88433943 + 2 NA Intergenic L1MA1|LINE|L1 -250321 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 384-370 chr8 84300084 84300433 + 2 NA intron (NM_001354320, intron 2 of 9) L1PA15|LINE|L1 -115226 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 223-348 chr8 102156511 102156680 + 2 NA Intergenic Intergenic 31163 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 505-162 chr2 187022782 187023182 + 2 NA Intergenic L1MA4A|LINE|L1 -173812 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 387-213 chr21 30858289 30858644 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 23114 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 244-319 chr6 48284832 48284997 + 2 NA Intergenic L1MA1|LINE|L1 -216225 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 384-395 chr9 31231702 31232043 + 2 NA Intergenic L1MB7|LINE|L1 149618 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 555-38 chr11 115341205 115341575 + 2 NA TTS (NR_135108) TTS (NR_135108) 7813 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 343-419 chr5 31347632 31347961 + 2 NA Intergenic Intergenic 154110 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 382-400 chr8 46478483 46478736 + 2 NA Intergenic ALR/Alpha|Satellite|centr 139034 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 539-4 chr1 48442299 48442714 + 2 NA intron (NM_019073, intron 3 of 12) HERV9N-int|LTR|ERV1 29698 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 328-319 chr20 53015085 53015305 + 2 NA intron (NM_173485, intron 1 of 2) L2b|LINE|L2 42837 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 230-340 chr7 7194976 7195136 + 2 NA intron (NM_020156, intron 1 of 3) L1PB1|LINE|L1 12441 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 340-367 chr3 91525063 91525249 + 2 NA Intergenic ALR/Alpha|Satellite|centr 2417535 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 623-73 chr2 232940666 232941264 + 2 NA intron (NM_019850, intron 3 of 14) LTR8|LTR|ERV1 -12814 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 401-316 chr8 65418910 65419246 + 2 NA Intergenic LTR79|LTR|ERVL 143588 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 351-346 chr4 57362781 57363088 + 2 NA Intergenic Intergenic -62938 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 341-546 chr8 136077548 136077798 + 2 NA Intergenic Intergenic -453125 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 356-179 chr16 25860601 25860904 + 2 NA intron (NM_006040, intron 1 of 1) L1MC1|LINE|L1 -164485 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 268-115 chr14 50019918 50020137 + 2 NA intron (NR_131171, intron 6 of 8) intron (NR_131171, intron 6 of 8) -12507 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 374-98 chr14 43713150 43713409 + 2 NA Intergenic Intergenic 794004 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 192-111 chr2 191100953 191101140 + 2 NA intron (NM_003151, intron 3 of 23) MIR3|SINE|MIR 49948 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 327-498 chr8 114467689 114467907 + 2 NA Intergenic L1MEb|LINE|L1 -1030859 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 606-73 chr19 29455686 29456139 + 2 NA intron (NR_040029, intron 1 of 9) AluY|SINE|Alu 69840 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 378-349 chr5 135530586 135530834 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 5254 NM_006161 4762 Hs.248149 NM_006161 ENSG00000181965 NEUROG1 AKA|Math4C|NEUROD3|bHLHa6|ngn1 neurogenin 1 protein-coding 169-121 chr7 36415549 36415650 + 2 NA intron (NM_001284302, intron 7 of 22) intron (NM_001284302, intron 7 of 22) -25242 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 302-41 chr10 26106746 26106964 + 2 NA intron (NM_017433, intron 17 of 34) L1ME3G|LINE|L1 -109452 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 565-141 chr5 54957621 54957955 + 2 NA Intergenic Intergenic 27805 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 619-92 chr4 94333101 94333557 + 2 NA intron (NM_014485, intron 2 of 5) intron (NM_014485, intron 2 of 5) 9507 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 335-234 chr2 29831588 29831774 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 89905 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 213-153 chr2 188766290 188766418 + 2 NA intron (NR_161166, intron 1 of 1) intron (NR_161166, intron 1 of 1) 23769 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 223-361 chr9 28396200 28396365 + 2 NA intron (NM_152570, intron 3 of 6) MIR|SINE|MIR 323023 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 258-92 chr12 60218711 60218925 + 2 NA Intergenic L1ME1|LINE|L1 529448 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 351-93 chr12 75610990 75611228 + 2 NA Intergenic L1MA1|LINE|L1 -99500 NM_007043 11103 Hs.645517 NM_007043 ENSG00000111615 KRR1 HRB2|RIP-1 KRR1 small subunit processome component homolog protein-coding 435-15 chr1 113888222 113888505 + 2 NA promoter-TSS (NM_001010922) promoter-TSS (NM_001010922) -782 NM_001010922 440603 Hs.123106 NM_001010922 ENSG00000188761 BCL2L15 Bfk|C1orf178 BCL2 like 15 protein-coding 136-54 chr20 39185468 39185585 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 39222 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 317-515 chr8 137180983 137181244 + 2 NA Intergenic MIR|SINE|MIR 232475 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 268-84 chr12 40173632 40173789 + 2 NA Intergenic Intergenic 17471 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 262-405 chr7 88881893 88882125 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -86272 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 376-236 chr3 24893367 24893718 + 2 NA intron (NM_001290216, intron 2 of 10) AluJo|SINE|Alu 64219 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 337-59 chr10 80333675 80333884 + 2 NA Intergenic Intergenic -10966 NR_070308 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 239-23 chr10 15796671 15796841 + 2 NA intron (NM_024948, intron 10 of 14) intron (NM_024948, intron 10 of 14) 63751 NM_024948 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 140-73 chr8 6959147 6959239 + 2 NA TTS (NR_073408) TTS (NR_073408) 968 NR_073408 449492 Hs.552565 NR_073408 ENSG00000233238 DEFA9P DEFAP2 defensin alpha 9, pseudogene pseudo 579-179 chr9 24139547 24139978 + 2 NA Intergenic Intergenic -289161 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 281-32 chr10 7203237 7203478 + 2 NA intron (NM_001029880, intron 12 of 20) intron (NM_001029880, intron 12 of 20) -16573 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 206-282 chr9 30402710 30402891 + 2 NA intron (NR_046204, intron 1 of 2) intron (NR_046204, intron 1 of 2) 5654 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 344-312 chr3 66453336 66453602 + 2 NA intron (NM_015541, intron 2 of 18) MIR|SINE|MIR 46952 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 312-101 chr12 33520166 33520422 + 2 NA Intergenic Intergenic -80475 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 246-427 chr8 140111132 140111338 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -10700 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 366-45 chr10 43466227 43466437 + 2 NA intron (NM_001355446, intron 2 of 4) AluSx|SINE|Alu 29221 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 170-120 chr5 125023235 125023370 + 2 NA Intergenic Intergenic -13529 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 157-6 chr1 90223665 90223806 + 2 NA Intergenic MER21B|LTR|ERVL 228625 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 319-455 chr6 47427136 47427424 + 2 NA Intergenic LTR8B|LTR|ERV1 -50509 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 270-143 chr16 61966771 61967034 + 2 NA intron (NM_001796, intron 2 of 11) MIRb|SINE|MIR 69536 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 270-293 chr5 33787196 33787407 + 2 NA intron (NM_001324511, intron 2 of 2) intron (NM_001324511, intron 2 of 2) 104689 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 153-78 chr5 15734779 15734902 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -119838 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 259-442 chrX 63340550 63340711 + 2 NA Intergenic L1M4|LINE|L1 10702 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 234-90 chr14 33524548 33524694 + 2 NA intron (NM_001165893, intron 3 of 10) MLT1C|LTR|ERVL-MaLR -184316 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 271-151 chr15 86658164 86658404 + 2 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -274596 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 364-435 chr8 66072380 66072593 + 2 NA intron (NR_146171, intron 4 of 6) L1MEg|LINE|L1 50933 NM_033105 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 180-4 chr1 74458597 74458746 + 2 NA intron (NM_015978, intron 20 of 24) L3|LINE|CR1 24769 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 114-49 chr5 35536408 35536474 + 2 NA Intergenic L1M6|LINE|L1 -81422 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 477-163 chr2 134182183 134182552 + 2 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) 55242 NR_037450 100500878 NR_037450 ENSG00000263813 MIR3679 mir-3679 microRNA 3679 ncRNA 364-200 chr2 26433247 26433572 + 2 NA intron (NM_145038, intron 7 of 16) intron (NM_145038, intron 7 of 16) 31489 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 266-142 chr16 75704599 75704801 + 2 NA Intergenic LTR8B|LTR|ERV1 -3239 NM_001351309 100033411 NM_001351307 ENSG00000282757 DUXB - double homeobox B protein-coding 297-50 chr10 54966693 54966969 + 2 NA intron (NM_001354404, intron 3 of 34) THE1B|LTR|ERVL-MaLR -165540 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 222-271 chr4 86845298 86845482 + 2 NA intron (NM_197965, intron 1 of 5) L2c|LINE|L2 3994 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 343-283 chr2 181766233 181766554 + 2 NA Intergenic Intergenic -85728 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 285-107 chr13 103607126 103607380 + 2 NA Intergenic L1MC4a|LINE|L1 182053 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 185-27 chr10 85100101 85100265 + 2 NA Intergenic Intergenic 98722 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 168-107 chr7 133779316 133779417 + 2 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 45522 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 554-129 chr2 208547822 208548170 + 2 NA intron (NR_136588, intron 1 of 5) intron (NR_136588, intron 1 of 5) 5354 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 198-30 chr10 117012587 117012773 + 2 NA intron (NM_001258300, intron 2 of 17) L1MC3|LINE|L1 -7103 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 214-25 chr1 209229794 209229979 + 2 NA Intergenic Intergenic -95570 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 556-154 chr4 46538829 46539329 + 2 NA Intergenic Intergenic -148951 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 331-51 chr10 64883840 64884115 + 2 NA Intergenic Intergenic 40541 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 219-94 chr13 106322541 106322710 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -53939 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 311-116 chr13 52144941 52145170 + 2 NA intron (NM_002498, intron 8 of 15) intron (NM_002498, intron 8 of 15) 14480 NM_152720 4752 Hs.409989 NM_002498 ENSG00000136098 NEK3 HSPK36 NIMA related kinase 3 protein-coding 571-147 chr6 40077148 40077572 + 2 NA Intergenic Intergenic -142898 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 355-472 chr7 83123191 83123448 + 2 NA intron (NM_033026, intron 3 of 24) L1MA3|LINE|L1 39565 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 306-350 chr4 41031790 41031973 + 2 NA intron (NM_173075, intron 5 of 16) intron (NM_173075, intron 5 of 16) -174689 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 648-80 chr20 22353930 22354331 + 2 NA Intergenic Intergenic 66513 NR_027090 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 313-269 chr2 105704940 105705107 + 2 NA Intergenic L1MA4A|LINE|L1 -39889 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 333-406 chr4 96844018 96844279 + 2 NA Intergenic Intergenic -522778 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 336-102 chr11 81727821 81728041 + 2 NA Intergenic L1MB8|LINE|L1 162905 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 432-160 chr21 23599721 23600070 + 2 NA Intergenic Intergenic -215060 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 538-256 chr9 78284938 78285302 + 2 NA Intergenic L1MB2|LINE|L1 -12005 NM_021154 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 558-190 chr6 76339600 76339947 + 2 NA Intergenic L1MA9|LINE|L1 253850 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 280-75 chr11 84981557 84981757 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -58236 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 492-158 chr20 57565993 57566410 + 2 NA 3' UTR (NM_002591, exon 10 of 10) 3' UTR (NM_002591, exon 10 of 10) 5091 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 498-169 chr3 66451966 66452460 + 2 NA intron (NM_015541, intron 2 of 18) Charlie4z|DNA|hAT-Charlie 48208 NM_015541 26018 Hs.518055 NM_015541 ENSG00000144749 LRIG1 LIG-1|LIG1 leucine rich repeats and immunoglobulin like domains 1 protein-coding 372-14 chr1 73215475 73215730 + 2 NA Intergenic Intergenic -90568 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 500-318 chr9 73470526 73470970 + 2 NA Intergenic L1PBa|LINE|L1 318883 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 238-128 chr16 49909590 49909780 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -51766 NM_001271620 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 354-161 chr16 8344126 8344456 + 2 NA Intergenic Intergenic 245547 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 312-184 chr17 21943102 21943323 + 2 NA Intergenic Intergenic 250689 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 490-308 chr8 136368272 136368728 + 2 NA Intergenic Intergenic -162298 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 253-184 chr2 53218746 53218969 + 2 NA Intergenic Intergenic -516242 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 207-49 chr11 5394063 5394241 + 2 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 4775 NM_001004756 390059 Hs.553731 NM_001004756 ENSG00000184698 OR51M1 HOR5'Beta7|OR11-40 olfactory receptor family 51 subfamily M member 1 protein-coding 351-325 chr3 191405162 191405471 + 2 NA Intergenic MST-int|LTR|ERVL-MaLR -20208 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 355-195 chr17 52319314 52319504 + 2 NA Intergenic Intergenic -71113 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 234-38 chr10 64788034 64788209 + 2 NA Intergenic Intergenic -37407 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 371-313 chr5 61723822 61724080 + 2 NA intron (NR_126524, intron 3 of 3) L1MEc|LINE|L1 11747 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 568-89 chr19 6912140 6912661 + 2 NA intron (NM_001974, intron 10 of 20) MIR|SINE|MIR 24821 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 283-370 chr5 90019232 90019470 + 2 NA Intergenic Intergenic -2631 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 321-226 chr17 3023411 3023582 + 2 NA intron (NM_001330058, intron 19 of 24) L2b|LINE|L2 40111 NM_014566 8386 Hs.553508 NM_014566 ENSG00000262628 OR1D5 C17orf2|OR17-2|OR17-30|OR17-31|OR1D4 olfactory receptor family 1 subfamily D member 5 protein-coding 390-342 chr6 163639887 163640149 + 2 NA Intergenic Intergenic 31466 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 220-172 chr2 103502009 103502186 + 2 NA Intergenic Intergenic -517668 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 335-400 chr4 166064311 166064590 + 2 NA intron (NM_012464, intron 15 of 20) intron (NM_012464, intron 15 of 20) 191213 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 214-242 chr4 101428113 101428252 + 2 NA Intergenic L1ME4b|LINE|L1 80405 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 586-73 chr2 54119954 54120369 + 2 NA intron (NM_138448, intron 1 of 3) L1MC3|LINE|L1 -3122 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 296-85 chr12 3849773 3849972 + 2 NA intron (NM_020367, intron 1 of 7) L1MA4|LINE|L1 23527 NM_001286522 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 245-378 chrX 123243706 123243868 + 2 NA intron (NM_007325, intron 2 of 15) L2a|LINE|L2 59509 NM_001256743 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 442-311 chr9 25011808 25012238 + 2 NA Intergenic L1MC3|LINE|L1 -466126 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 326-489 chr7 37687941 37688146 + 2 NA intron (NM_001329994, intron 3 of 3) MER58A|DNA|hAT-Charlie 4277 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 318-490 chr6 137101729 137101987 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 -56678 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 482-27 chr1 229896563 229896967 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie -2857 NR_146475 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 309-445 chr5 82680429 82680656 + 2 NA Intergenic L3|LINE|CR1 -159613 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 276-20 chr1 163531289 163531496 + 2 NA Intergenic Intergenic -108201 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 508-79 chr17 61965278 61965765 + 2 NA intron (NM_005121, intron 19 of 29) intron (NM_005121, intron 19 of 29) -37539 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 234-389 chr8 105294579 105294784 + 2 NA Intergenic Intergenic -23757 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 345-56 chr10 37358274 37358523 + 2 NA Intergenic L1MB7|LINE|L1 49212 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 690-51 chr18 21685046 21685419 + 2 NA intron (NM_138340, intron 3 of 8) intron (NM_138340, intron 3 of 8) 1714 NR_031565 100302135 NR_031565 ENSG00000221493 MIR320C1 MIR320C-1|MIRN320C1|hsa-mir-320c-1|mir-320c-1 microRNA 320c-1 ncRNA 297-386 chr5 156480147 156480346 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 153082 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 325-270 chr2 99124383 99124584 + 2 NA intron (NM_001349014, intron 1 of 16) L1MC2|LINE|L1 16697 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 181-40 chr14 20810057 20810191 + 2 NA Intergenic Intergenic -7280 NM_198234 6035 Hs.78224 NM_002933 ENSG00000129538 RNASE1 RAC1|RIB1|RNS1 ribonuclease A family member 1, pancreatic protein-coding 278-134 chr15 83076400 83076549 + 2 NA Intergenic L1ME4a|LINE|L1 9139 NR_039740 100616404 NR_039740 ENSG00000263643 MIR4515 mir-4515 microRNA 4515 ncRNA 367-86 chr12 24523346 24523680 + 2 NA intron (NM_152989, intron 1 of 17) L1MB1|LINE|L1 38978 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 287-428 chr9 26919091 26919311 + 2 NA intron (NM_001031689, intron 9 of 13) intron (NM_001031689, intron 9 of 13) -26373 NM_001167575 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 340-15 chr1 93709813 93710039 + 2 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -28089 NM_003567 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 422-258 chr6 48798762 48799039 + 2 NA Intergenic L1MC4a|LINE|L1 664353 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 221-304 chr8 118680887 118681051 + 2 NA intron (NR_038210, intron 3 of 4) L1MA8|LINE|L1 -59006 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 594-160 chr9 25600799 25601385 + 2 NA Intergenic Intergenic 77766 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 295-277 chr22 34524961 34525222 + 2 NA Intergenic Intergenic 472825 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 316-2 chr1 23980920 23981130 + 2 NA promoter-TSS (NR_034035) promoter-TSS (NR_034035) -562 NR_034035 10772 Hs.3530 NM_006625 ENSG00000188529 SRSF10 FUSIP1|FUSIP2|NSSR|PPP1R149|SFRS13|SFRS13A|SRp38|SRrp40|TASR|TASR1|TASR2 serine and arginine rich splicing factor 10 protein-coding 283-122 chr13 67855366 67855590 + 2 NA Intergenic Intergenic 483091 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 229-42 chr10 86280448 86280633 + 2 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) -15752 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 341-143 chr14 45362930 45363231 + 2 NA Intergenic LTR40b|LTR|ERVL -109878 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 306-479 chr7 84350204 84350467 + 2 NA Intergenic Intergenic -155546 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 315-449 chr7 86627287 86627459 + 2 NA Intergenic MIRc|SINE|MIR -16536 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 229-143 chr17 20157411 20157596 + 2 NA intron (NM_001033554, intron 1 of 5) intron (NM_001033554, intron 1 of 5) 1431 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 367-451 chr8 84139144 84139391 + 2 NA Intergenic Intergenic -43520 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 300-165 chr18 54810175 54810357 + 2 NA Intergenic Intergenic -18211 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 137-47 chr2 117169014 117169126 + 2 NA Intergenic L1M3|LINE|L1 -645621 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 318-531 chr8 33187021 33187321 + 2 NA Intergenic Intergenic 285975 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 232-106 chr14 82154616 82154817 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -411578 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 397-119 chr17 61228001 61228249 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 139579 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 304-272 chr2 123621742 123622022 + 2 NA Intergenic L1MA2|LINE|L1 403292 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 335-274 chr2 167557064 167557330 + 2 NA Intergenic Intergenic -261475 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 300-283 chr3 100497320 100497547 + 2 NA intron (NM_018004, intron 1 of 5) L1MB3|LINE|L1 4814 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 357-127 chr15 26376910 26377212 + 2 NA Intergenic Intergenic 252029 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 551-222 chr8 120508777 120509266 + 2 NA intron (NM_022045, intron 16 of 21) MER5B|DNA|hAT-Charlie 63602 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 467-195 chr3 182387046 182387463 + 2 NA Intergenic MIRb|SINE|MIR 99108 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 205-225 chr5 101117010 101117177 + 2 NA Intergenic Intergenic -213811 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 412-4 chr1 37023993 37024279 + 2 NA intron (NM_000831, intron 1 of 15) L3|LINE|CR1 10379 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 278-291 chr3 161882717 161882883 + 2 NA Intergenic Intergenic 385992 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 304-516 chr8 84303620 84303864 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -111742 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 224-136 chr2 42007715 42007886 + 2 NA Intergenic Intergenic -40221 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 356-349 chr4 31606001 31606241 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 99577 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 217-302 chr5 93702467 93702617 + 2 NA intron (NM_032042, intron 10 of 10) L2a|LINE|L2 39058 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 253-325 chr5 36111218 36111434 + 2 NA intron (NM_001007527, intron 13 of 17) intron (NM_001007527, intron 13 of 17) 36662 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 262-292 chr3 153770984 153771180 + 2 NA Intergenic L1PA15-16|LINE|L1 -8556 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 321-211 chr16 26811208 26811527 + 2 NA Intergenic L1MA8|LINE|L1 -255560 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 212-279 chr6 53869537 53869709 + 2 NA intron (NM_018214, intron 2 of 13) L2b|LINE|L2 -60359 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 452-185 chr4 52376593 52377039 + 2 NA Intergenic Intergenic 279723 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 526-6 chr1 116803474 116803827 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 49220 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 349-197 chr16 54463291 54463478 + 2 NA Intergenic L1MC3|LINE|L1 -92685 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 496-108 chr16 76764806 76765214 + 2 NA Intergenic L1MC3|LINE|L1 -103926 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 351-37 chr10 37975310 37975543 + 2 NA intron (NR_138063, intron 1 of 8) intron (NR_138063, intron 1 of 8) 554 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 588-161 chr8 91980635 91981213 + 2 NA intron (NM_004349, intron 8 of 10) AluJr4|SINE|Alu 36756 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 237-288 chr5 22837919 22838123 + 2 NA intron (NM_001364105, intron 1 of 15) MLT2E|LTR|ERVL 15323 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 748-78 chr7 12045271 12045826 + 2 NA Intergenic Intergenic -165746 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 303-298 chr3 162685963 162686236 + 2 NA Intergenic L2a|LINE|L2 617202 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 281-242 chr2 204919394 204919598 + 2 NA intron (NM_205863, intron 2 of 21) L1ME2z|LINE|L1 374021 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 558-38 chr11 110867406 110867893 + 2 NA Intergenic LTR67B|LTR|ERVL -154460 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 294-274 chr22 26346399 26346617 + 2 NA intron (NM_001184776, intron 10 of 14) MLT1F|LTR|ERVL-MaLR -82752 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 354-459 chr8 66208871 66209154 + 2 NA Intergenic MIR3|SINE|MIR 16898 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 463-221 chr5 5961722 5962021 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 375421 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 573-102 chr2 235339016 235339451 + 2 NA Intergenic Tigger11a|DNA|TcMar-Tigger -154810 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 483-15 chr1 199546045 199546387 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 397618 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 276-173 chr15 98077730 98077888 + 2 NA Intergenic L1ME3F|LINE|L1 10944 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 355-271 chr2 229101654 229101952 + 2 NA intron (NM_001330157, intron 1 of 1) MLT1D|LTR|ERVL-MaLR 130289 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 442-188 chr3 83202395 83202801 + 2 NA Intergenic Intergenic 1216456 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 361-356 chr5 40730829 40731182 + 2 NA intron (NM_012382, intron 2 of 4) intron (NM_012382, intron 2 of 4) 24956 NM_012382 23548 Hs.348915 NM_012382 ENSG00000113638 TTC33 OSRF tetratricopeptide repeat domain 33 protein-coding 293-443 chr8 109141899 109142139 + 2 NA Intergenic FLAM_C|SINE|Alu 55391 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 566-124 chr3 38768551 38768959 + 2 NA intron (NM_006514, intron 4 of 26) L1PB1|LINE|L1 25255 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 345-299 chr2 215088651 215088897 + 2 NA intron (NR_103740, intron 2 of 54) intron (NR_103740, intron 2 of 54) 49852 NR_103740 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 578-107 chr21 30084818 30085275 + 2 NA Intergenic Intergenic 81759 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 392-50 chr12 17012005 17012312 + 2 NA Intergenic L1PBb|LINE|L1 23411 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 333-155 chr14 81894053 81894236 + 2 NA Intergenic L1PB1|LINE|L1 -151006 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 292-107 chr12 67884733 67884922 + 2 NA Intergenic Intergenic -44408 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 338-478 chr6 141653433 141653699 + 2 NA Intergenic Intergenic 435233 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 372-331 chr3 84854332 84854655 + 2 NA intron (NR_033860, intron 7 of 20) intron (NR_033860, intron 7 of 20) 15082 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 312-233 chr2 57188051 57188307 + 2 NA Intergenic Intergenic -719472 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 201-176 chr4 61449715 61449869 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 247620 NM_001371342 359-150 chr15 25490009 25490263 + 2 NA Intergenic L1MB7|LINE|L1 -51080 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 327-509 chr8 140057014 140057191 + 2 NA intron (NM_001160372, intron 17 of 22) L1MB1|LINE|L1 43433 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 362-450 chr8 129524221 129524421 + 2 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -40179 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 527-253 chr7 126348891 126349327 + 2 NA Intergenic Intergenic 709075 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 364-110 chr12 97634611 97634830 + 2 NA Intergenic MIRc|SINE|MIR 70908 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 433-284 chr8 107154839 107155171 + 2 NA Intergenic Intergenic 181510 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 415-58 chr12 32074963 32075255 + 2 NA Intergenic AluSq2|SINE|Alu -31698 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 251-283 chr5 5572680 5572843 + 2 NA Intergenic Intergenic 150084 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 373-286 chr4 62345431 62345719 + 2 NA Intergenic L1MEf|LINE|L1 -183810 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 725-52 chr6 62651882 62652441 + 2 NA Intergenic LTR25-int|LTR|ERV1 -365934 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 247-356 chr6 46303475 46303644 + 2 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) 22333 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 221-68 chr13 25420350 25420486 + 2 NA intron (NM_016529, intron 1 of 36) intron (NM_016529, intron 1 of 36) -48356 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 359-476 chr8 87013735 87013970 + 2 NA intron (NM_173538, intron 4 of 10) MER4B-int|LTR|ERV1 147437 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 281-113 chr14 37420771 37420981 + 2 NA intron (NM_138731, intron 11 of 13) intron (NM_138731, intron 11 of 13) 174373 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 307-126 chr14 20781465 20781664 + 2 NA intron (NM_005615, intron 1 of 1) intron (NM_005615, intron 1 of 1) 296 NM_005615 6039 Hs.23262 NM_005615 ENSG00000169413 RNASE6 RAD1|RNS6|RNasek6 ribonuclease A family member k6 protein-coding 311-270 chr2 135800648 135800916 + 2 NA exon (NM_002299, exon 12 of 17) exon (NM_002299, exon 12 of 17) -19409 NR_045486 100507600 Hs.662020 NR_045486 ENSG00000226806 LOC100507600 - uncharacterized LOC100507600 ncRNA 307-200 chr18 11291501 11291709 + 2 NA Intergenic L1M5|LINE|L1 -142843 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 224-350 chr9 73180326 73180517 + 2 NA Intergenic (AATGA)n|Simple_repeat|Simple_repeat 28556 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 265-387 chr8 76690460 76690716 + 2 NA intron (NM_024721, intron 1 of 10) intron (NM_024721, intron 1 of 10) -7313 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 281-55 chr10 121230384 121230574 + 2 NA Intergenic Intergenic 300835 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 494-164 chr3 10906409 10906697 + 2 NA intron (NM_014229, intron 6 of 13) L1M8|LINE|L1 -86181 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 354-311 chr3 183565191 183565520 + 2 NA Intergenic Intergenic -9649 NM_130446 89857 Hs.659147 NM_130446 ENSG00000172578 KLHL6 - kelch like family member 6 protein-coding 208-249 chr7 91327444 91327575 + 2 NA Intergenic Intergenic 63076 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 566-171 chr6 160329984 160330439 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -18167 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 369-137 chr15 88218678 88218864 + 2 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) -12797 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 503-175 chr20 55043560 55043910 + 2 NA Intergenic Intergenic -379308 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 351-238 chr2 136171729 136171927 + 2 NA Intergenic AluSq2|SINE|Alu -53673 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 262-350 chr5 125060837 125060986 + 2 NA intron (NR_109882, intron 2 of 5) (GTATGT)n|Simple_repeat|Simple_repeat 24080 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 356-468 chr8 42212663 42212942 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -5237 NM_000930 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 120-13 chr12 33530803 33530900 + 2 NA Intergenic L2c|LINE|L2 -91032 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 164-79 chr3 138500828 138500922 + 2 NA exon (NM_001288966, exon 14 of 16) exon (NM_001288966, exon 14 of 16) 66259 NM_031913 83850 Hs.477711 NM_031913 ENSG00000158220 ESYT3 CHR3SYT|E-Syt3|FAM62C extended synaptotagmin 3 protein-coding 424-158 chr20 17039945 17040324 + 2 NA Intergenic Intergenic -185973 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 307-512 chr9 28476751 28476946 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 242457 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 389-131 chr17 13042525 13042817 + 2 NA Intergenic Intergenic -24607 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 257-283 chr3 178572338 178572585 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 13611 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 339-395 chr4 12715242 12715534 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 491937 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 115-2 chr1 79455729 79455796 + 2 NA Intergenic L2a|LINE|L2 -449032 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 222-283 chr5 13744645 13744770 + 2 NA intron (NM_001369, intron 65 of 78) intron (NM_001369, intron 65 of 78) 199773 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 210-218 chr5 23385492 23385660 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -122033 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 142-40 chr2 96126201 96126327 + 2 NA intron (NM_001002036, intron 8 of 8) L1MB8|LINE|L1 -9693 NM_000682 151 Hs.247686 NM_000682 ENSG00000274286 ADRA2B ADRA2L1|ADRA2RL1|ADRARL1|ALPHA2BAR|FAME2|alpha-2BAR adrenoceptor alpha 2B protein-coding 334-51 chr10 42986636 42986891 + 2 NA Intergenic Intergenic -5256 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 226-83 chr13 102633705 102633925 + 2 NA intron (NM_001330588, intron 10 of 29) intron (NM_001330588, intron 10 of 29) 36829 NM_003291 7174 Hs.432424 NM_003291 ENSG00000134900 TPP2 TPP-2|TPP-II|TPPII tripeptidyl peptidase 2 protein-coding 125-29 chr2 184558286 184558409 + 2 NA Intergenic Intergenic -40182 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 376-140 chr17 64376429 64376732 + 2 NA intron (NM_000442, intron 3 of 15) L2c|LINE|L2 14280 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 628-52 chr16 49151009 49151496 + 2 NA Intergenic L1MA9|LINE|L1 130586 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 555-135 chr3 187473819 187474205 + 2 NA Intergenic MER4-int|LTR|ERV1 26966 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 657-106 chr9 34973202 34973666 + 2 NA intron (NM_015297, intron 3 of 7) intron (NM_015297, intron 3 of 7) 15149 NM_015297 23349 Hs.7989 NM_015297 ENSG00000122733 PHF24 - PHD finger protein 24 protein-coding 453-247 chr7 22650706 22651080 + 2 NA non-coding (NR_122075, exon 5 of 5) non-coding (NR_122075, exon 5 of 5) 14640 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 691-57 chr4 92758510 92759082 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 454397 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 339-466 chr5 146399856 146400146 + 2 NA Intergenic L2a|LINE|L2 -47332 NM_001040006 10915 Hs.443465 NM_006706 ENSG00000113649 TCERG1 CA150|TAF2S|Urn1 transcription elongation regulator 1 protein-coding 464-155 chr22 48226002 48226304 + 2 NA Intergenic Intergenic -48211 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 278-82 chr12 127511521 127511739 + 2 NA Intergenic L1MEc|LINE|L1 124837 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 673-9 chr1 217748378 217748965 + 2 NA intron (NM_138796, intron 6 of 10) AluSx1|SINE|Alu 36449 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 315-421 chr6 75308172 75308480 + 2 NA 3' UTR (NM_001289987, exon 7 of 7) 3' UTR (NM_001289987, exon 7 of 7) 23312 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 421-271 chr7 10365186 10365478 + 2 NA Intergenic L1P3|LINE|L1 -337344 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 359-16 chr1 95482376 95482690 + 2 NA Intergenic LTR78|LTR|ERV1 7796 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 420-73 chr13 89876675 89876974 + 2 NA Intergenic Intergenic 242893 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 450-258 chr6 48405822 48406191 + 2 NA Intergenic L1ME1|LINE|L1 -337317 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 386-373 chr9 24447791 24448083 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 97739 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 295-323 chr4 31108580 31108781 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -62464 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 316-87 chr10 128815234 128815433 + 2 NA Intergenic Intergenic -97500 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 165-79 chr3 77609393 77609553 + 2 NA intron (NM_001290039, intron 22 of 26) intron (NM_001290039, intron 22 of 26) 439490 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 185-195 chr7 128211977 128212091 + 2 NA Intergenic Intergenic 4162 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 276-134 chr13 96551093 96551307 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 123971 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 333-627 chrX 143077280 143077451 + 2 NA Intergenic Intergenic 51437 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 201-184 chr4 174721915 174722083 + 2 NA intron (NM_006529, intron 4 of 9) intron (NM_006529, intron 4 of 9) 107248 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 595-107 chr3 54404900 54405376 + 2 NA intron (NM_018398, intron 4 of 37) (CTATA)n|Simple_repeat|Simple_repeat 234719 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 310-514 chr8 66308798 66309071 + 2 NA Intergenic Intergenic 116820 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 603-127 chr5 1676207 1676697 + 2 NA Intergenic L1MEf|LINE|L1 32416 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 565-124 chr3 147004792 147005203 + 2 NA Intergenic L1M1|LINE|L1 83074 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 112-54 chr9 24426046 24426114 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 119596 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 280-239 chr21 22562533 22562713 + 2 NA Intergenic Intergenic 464006 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 282-240 chr2 183908503 183908712 + 2 NA Intergenic L1MD1|LINE|L1 -470368 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 780-26 chr18 14026612 14027272 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie 105493 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 165-65 chr20 33512507 33512655 + 2 NA intron (NM_001032999, intron 1 of 10) L1ME3A|LINE|L1 22485 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 537-34 chr10 129752608 129752924 + 2 NA intron (NM_002412, intron 3 of 4) L1MEf|LINE|L1 90608 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 263-398 chr7 68670919 68671098 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy 650755 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 635-99 chr7 36444643 36445123 + 2 NA intron (NM_001284302, intron 21 of 22) intron (NM_001284302, intron 21 of 22) -54526 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 448-48 chr11 29181669 29182031 + 2 NA Intergenic LTR78|LTR|ERV1 -412563 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 458-20 chr10 43014925 43015275 + 2 NA Intergenic L1M4|LINE|L1 17537 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 447-304 chrX 75243781 75244073 + 2 NA intron (NM_001363821, intron 4 of 9) intron (NM_001363821, intron 4 of 9) -30132 NM_001307944 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 346-201 chr17 72542344 72542665 + 2 NA intron (NR_036488, intron 1 of 3) L2c|LINE|L2 50300 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 216-218 chr3 68288178 68288322 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -212387 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 335-45 chr10 22910068 22910322 + 2 NA Intergenic Intergenic -17829 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 419-193 chr3 128982611 128982956 + 2 NA intron (NM_001348522, intron 5 of 8) Tigger1|DNA|TcMar-Tigger 9114 NM_001348523 57501 Hs.518247 NM_020741 ENSG00000114656 KIAA1257 - KIAA1257 protein-coding 565-39 chr13 100709803 100710276 + 2 NA intron (NR_047687, intron 1 of 7) Tigger3b|DNA|TcMar-Tigger 1714 NR_047687 100885778 Hs.602949 NR_047687 ENSG00000233009 NALCN-AS1 - NALCN antisense RNA 1 ncRNA 201-114 chr2 15792311 15792440 + 2 NA Intergenic LTR24|LTR|ERV1 101593 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 253-156 chr17 53698739 53698989 + 2 NA Intergenic Intergenic -124063 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 565-142 chr5 63880733 63881141 + 2 NA Intergenic AluSc|SINE|Alu 81355 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 563-18 chr10 53878443 53878997 + 2 NA intron (NM_001354411, intron 27 of 34) intron (NM_001354411, intron 27 of 34) -607510 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 365-43 chr10 39168041 39168237 + 2 NA Intergenic ALR/Alpha|Satellite|centr 471543 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 636-21 chr11 58472074 58472651 + 2 NA Intergenic L1MB8|LINE|L1 -32189 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 323-137 chr14 38642358 38642551 + 2 NA Intergenic MLT2B4|LTR|ERVL -240142 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 283-422 chr7 54112553 54112731 + 2 NA Intergenic Intergenic -218055 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 784-63 chr8 123874201 123874761 + 2 NA intron (NM_001039112, intron 1 of 40) L2a|LINE|L2 22494 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 407-162 chr2 229396885 229397124 + 2 NA intron (NM_139072, intron 10 of 12) LTR47A2|LTR|ERVL -125717 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 267-437 chr8 134334453 134334663 + 2 NA Intergenic Intergenic -263513 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 344-397 chr5 126401565 126401761 + 2 NA intron (NM_001146319, intron 1 of 13) L1M3c|LINE|L1 -21483 NM_001146320 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 372-357 chr4 45465776 45466071 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 658131 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 516-209 chr5 66317068 66317575 + 2 NA Intergenic L1PA16|LINE|L1 -107875 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 266-271 chr3 189077433 189077636 + 2 NA Intergenic L1ME2|LINE|L1 -94437 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 162-8 chr1 179413142 179413298 + 2 NA intron (NR_073544, intron 12 of 25) intron (NR_073544, intron 12 of 25) 47176 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 261-22 chr1 166302278 166302416 + 2 NA Intergenic L2a|LINE|L2 -135592 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 544-229 chr8 112272340 112272751 + 2 NA intron (NM_001363185, intron 55 of 66) intron (NM_001363185, intron 55 of 66) -370948 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 132-44 chr2 202042969 202043080 + 2 NA Intergenic MIRb|SINE|MIR 8437 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 426-232 chr5 41971516 41971912 + 2 NA Intergenic Intergenic 46433 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 417-117 chr18 44340995 44341312 + 2 NA intron (NR_110792, intron 2 of 4) L1PB|LINE|L1 190544 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 274-155 chr16 82203410 82203578 + 2 NA Intergenic LTR16E2|LTR|ERVL -33270 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 425-295 chr8 32971479 32971830 + 2 NA Intergenic FLAM_C|SINE|Alu 249819 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 323-263 chr2 108309505 108309737 + 2 NA 3' UTR (NM_176825, exon 9 of 9) 3' UTR (NM_176825, exon 9 of 9) -12617 NR_037191 151234 Hs.447681 NR_037191 ENSG00000237223 SULT1C2P1 SULT1C1P sulfotransferase family 1C member 2 pseudogene 1 pseudo 337-264 chr2 116181469 116181697 + 2 NA Intergenic L1MA1|LINE|L1 837768 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 314-535 chr7 53015609 53015915 + 2 NA Intergenic MLT2D|LTR|ERVL -19871 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 296-175 chr16 64043510 64043678 + 2 NA Intergenic L1MA2|LINE|L1 1078469 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 392-30 chr10 78491399 78491775 + 2 NA Intergenic L1MD1|LINE|L1 224245 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 601-99 chr3 166015187 166015713 + 2 NA Intergenic Intergenic -178027 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 413-258 chr6 36677757 36678115 + 2 NA promoter-TSS (NM_000389) promoter-TSS (NM_000389) 623 NR_144384 108783646 Hs.745581 NR_144384 ENSG00000285244 DINOL DINO damage induced long noncoding RNA ncRNA 587-58 chr16 79028891 79029329 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 571627 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 225-331 chr7 53038251 53038414 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 2699 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 502-175 chr3 42953878 42954241 + 2 NA Intergenic L1MC1|LINE|L1 -17274 NR_122033 100506275 Hs.517918 NR_122033 ENSG00000206552 KRBOX1-AS1 - KRBOX1 antisense RNA 1 ncRNA 474-85 chr14 77940559 77940939 + 2 NA Intergenic Intergenic 140640 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 301-97 chr12 78994092 78994376 + 2 NA intron (NM_001291901, intron 2 of 9) intron (NM_001291901, intron 2 of 9) -51458 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 495-120 chr2 160090336 160090742 + 2 NA Intergenic L1MD|LINE|L1 -27924 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 320-6 chr1 40921713 40921888 + 2 NA Intergenic Intergenic -57896 NR_125440 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 327-41 chr10 33088553 33088873 + 2 NA intron (NR_160030, intron 1 of 2) intron (NR_160030, intron 1 of 2) 28094 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 190-47 chr13 55192015 55192143 + 2 NA Intergenic Intergenic 17625 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 303-31 chr10 10748977 10749231 + 2 NA intron (NM_001326317, intron 2 of 14) L2a|LINE|L2 45810 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 402-8 chr1 83079788 83080149 + 2 NA intron (NR_147074, intron 6 of 10) intron (NR_147074, intron 6 of 10) -93760 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 512-232 chr5 156916651 156917033 + 2 NA Intergenic Intergenic 46384 NM_138379 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 366-157 chr16 79061774 79062002 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 538849 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 179-82 chr4 56628816 56628939 + 2 NA Intergenic LTR54B|LTR|ERV1 27645 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 438-156 chr22 27615811 27616220 + 2 NA Intergenic MIR|SINE|MIR 185741 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 490-320 chrX 64714545 64714801 + 2 NA Intergenic L1MA5|LINE|L1 261777 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 272-128 chr15 38740277 38740487 + 2 NA Intergenic Intergenic 43784 NR_160786 204-188 chr3 6973217 6973379 + 2 NA intron (NM_000844, intron 1 of 9) L2a|LINE|L2 -79281 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 439-187 chr3 108614050 108614419 + 2 NA intron (NM_014648, intron 4 of 32) L1M5|LINE|L1 24512 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 299-173 chr17 57896217 57896458 + 2 NA intron (NM_001271875, intron 1 of 10) L1ME4b|LINE|L1 7052 NM_001292025 404093 Hs.46679 NM_001271875 ENSG00000180891 CUEDC1 - CUE domain containing 1 protein-coding 215-347 chrX 75041006 75041211 + 2 NA Intergenic L1MB8|LINE|L1 115175 NM_001271697 22 Hs.370480 NM_004299 ENSG00000131269 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP binding cassette subfamily B member 7 protein-coding 181-125 chr5 68964522 68964669 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 65332 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 477-270 chr8 50479799 50480178 + 2 NA intron (NR_135797, intron 8 of 20) intron (NR_135797, intron 8 of 20) 315857 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 282-327 chr4 31843052 31843233 + 2 NA Intergenic Intergenic -154237 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 249-265 chr3 84931834 84932011 + 2 NA Intergenic Intergenic -27067 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 329-150 chr14 24500453 24500669 + 2 NA intron (NR_110032, intron 2 of 2) L1MA8|LINE|L1 7704 NM_001836 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 284-430 chr9 13959703 13959915 + 2 NA Intergenic Intergenic 31838 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 290-377 chr5 180974783 180974933 + 2 NA Intergenic L1MA9|LINE|L1 -13988 NM_197975 10917 Hs.225949 NM_006707 ENSG00000168903 BTNL3 BTN9.1|BTNLR butyrophilin like 3 protein-coding 134-60 chr4 55539901 55539994 + 2 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 5985 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 321-276 chr2 14857012 14857326 + 2 NA Intergenic L1MA3|LINE|L1 224452 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 349-448 chr6 69488901 69489143 + 2 NA Intergenic Intergenic 307444 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 458-129 chr2 68059419 68059843 + 2 NA intron (NM_001190263, intron 1 of 5) L2c|LINE|L2 3373 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 417-221 chr5 74094821 74095145 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 213342 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 363-154 chr15 57043094 57043434 + 2 NA intron (NM_001322164, intron 3 of 19) L1MB1|LINE|L1 123819 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 527-170 chr3 29146920 29147417 + 2 NA Intergenic AluSx|SINE|Alu 133771 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 543-114 chr2 32784891 32785414 + 2 NA intron (NM_017735, intron 15 of 19) L1MEi|LINE|L1 -40281 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 287-64 chr10 80616367 80616609 + 2 NA intron (NM_207372, intron 6 of 6) intron (NM_207372, intron 6 of 6) -33309 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 735-48 chr2 217267684 217268071 + 2 NA Intergenic LTR8B|LTR|ERV1 -14856 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 270-88 chr12 66961908 66962164 + 2 NA Intergenic Intergenic 134248 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 198-133 chr2 133495912 133496061 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 72477 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 270-278 chr4 125751757 125751995 + 2 NA Intergenic Intergenic 244617 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 266-414 chr8 64250363 64250572 + 2 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 118091 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 340-481 chr6 130723310 130723613 + 2 NA Intergenic Intergenic -103944 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 312-533 chr8 132712673 132712882 + 2 NA intron (NM_144649, intron 9 of 9) intron (NM_144649, intron 9 of 9) -37232 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 316-441 chr5 57738103 57738397 + 2 NA Intergenic Intergenic 87590 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 332-427 chr5 122246472 122246770 + 2 NA Intergenic L1PB3|LINE|L1 -65070 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 167-115 chr9 114684955 114685110 + 2 NA Intergenic MIRb|SINE|MIR -2943 NR_133056 100505478 Hs.200101 NM_001199233 ENSG00000230601 TEX48 - testis expressed 48 protein-coding 352-333 chr3 149838178 149838415 + 2 NA intron (NM_007282, intron 2 of 10) THE1B-int|LTR|ERVL-MaLR 25608 NM_183383 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 332-259 chr2 114368155 114368483 + 2 NA Intergenic MIR3|SINE|MIR -74322 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 293-20 chr1 209971072 209971291 + 2 NA intron (NM_001146261, intron 3 of 9) L1PA16|LINE|L1 32964 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 249-168 chr19 2643938 2644185 + 2 NA intron (NM_052847, intron 2 of 4) AluSx1|SINE|Alu 13346 NR_107004 102465838 NR_107004 ENSG00000277904 MIR7850 hsa-mir-7850 microRNA 7850 ncRNA 219-89 chr13 67694199 67694364 + 2 NA Intergenic Intergenic 321894 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 336-196 chr16 35838150 35838378 + 2 NA Intergenic Intergenic 91712 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 559-97 chr2 113098418 113098810 + 2 NA Intergenic L1PBa1|LINE|L1 -19279 NM_173841 3557 Hs.81134 NM_000577 ENSG00000136689 IL1RN DIRA|ICIL-1RA|IL-1RN|IL-1ra|IL-1ra3|IL1F3|IL1RA|IRAP|MVCD4 interleukin 1 receptor antagonist protein-coding 336-415 chr4 60179774 60180035 + 2 NA Intergenic Intergenic -742715 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 293-337 chr5 58044720 58044942 + 2 NA Intergenic Intergenic 77510 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 391-159 chr2 18304823 18305136 + 2 NA Intergenic Intergenic 255674 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 366-57 chr10 88321094 88321375 + 2 NA intron (NM_018363, intron 5 of 6) L1PA17|LINE|L1 262084 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 339-418 chr4 96586798 96587006 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 276199 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 334-504 chr7 85469184 85469490 + 2 NA intron (NR_134240, intron 2 of 3) L1MC5a|LINE|L1 48215 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 210-7 chr1 84201968 84202139 + 2 NA intron (NM_001300915, intron 10 of 11) intron (NM_001300915, intron 10 of 11) 20421 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 434-177 chr3 23383206 23383488 + 2 NA intron (NM_001370225, intron 3 of 5) L2|LINE|L2 180020 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 269-158 chr17 73832272 73832429 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -3813 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 517-145 chr2 160689248 160689721 + 2 NA Intergenic MIR|SINE|MIR -195677 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 335-541 chr8 112735531 112735834 + 2 NA intron (NM_001363185, intron 11 of 66) L4_B_Mam|LINE|RTE-X 92189 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 280-345 chr6 43413170 43413438 + 2 NA Intergenic MER52A|LTR|ERV1 -14237 NM_001350518 89845 Hs.55879 NM_033450 ENSG00000124574 ABCC10 EST182763|MRP7|SIMRP7 ATP binding cassette subfamily C member 10 protein-coding 250-163 chr17 62320386 62320562 + 2 NA Intergenic Intergenic -44819 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 273-314 chr4 30814634 30814791 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 94343 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 796-11 chr12 15615403 15616075 + 2 NA Intergenic L1PA16|LINE|L1 69128 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 594-168 chrUn_KI270521v1 3765 4280 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 477-81 chr12 103433192 103433640 + 2 NA intron (NR_103526, intron 2 of 10) L1MC5a|LINE|L1 62552 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 272-442 chr8 57945866 57946023 + 2 NA Intergenic L1PA15-16|LINE|L1 -32414 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 506-50 chr11 16079756 16080141 + 2 NA intron (NM_017508, intron 8 of 14) intron (NM_017508, intron 8 of 14) -110327 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 475-174 chr3 21811549 21811888 + 2 NA Intergenic L1MC5a|LINE|L1 -60508 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 589-20 chr11 112628998 112629469 + 2 NA Intergenic Intergenic -73431 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 419-197 chr3 164966195 164966510 + 2 NA Intergenic Intergenic 112144 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 221-245 chr5 89515075 89515223 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 501571 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 327-337 chr3 106077603 106077890 + 2 NA Intergenic Intergenic -208345 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 290-8 chr1 68368232 68368478 + 2 NA Intergenic Intergenic 81599 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 376-164 chr19 50776092 50776411 + 2 NA non-coding (NR_134883, exon 4 of 4) non-coding (NR_134883, exon 4 of 4) 5787 NM_001506 2854 Hs.515555 NM_001506 ENSG00000142511 GPR32 RVDR1 G protein-coupled receptor 32 protein-coding 548-163 chr4 74562455 74562876 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 117529 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 237-374 chr8 79057359 79057547 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 219924 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 307-142 chr14 62002604 62002902 + 2 NA intron (NM_001367661, intron 4 of 8) L1MCc|LINE|L1 75058 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 271-112 chr13 55832935 55833120 + 2 NA Intergenic Intergenic 658573 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 504-220 chr5 155250981 155251400 + 2 NA Intergenic MIRc|SINE|MIR 237435 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 288-137 chr15 75962879 75963056 + 2 NA intron (NM_138573, intron 3 of 5) intron (NM_138573, intron 3 of 5) 49457 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 130-55 chr3 69985553 69985653 + 2 NA Intergenic Intergenic -14141 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 255-255 chr3 47329604 47329784 + 2 NA intron (NM_025010, intron 3 of 9) intron (NM_025010, intron 3 of 9) 46750 NM_025010 23276 Hs.517946 NM_025010 ENSG00000114648 KLHL18 - kelch like family member 18 protein-coding 337-515 chr7 37592898 37593097 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -90769 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 513-82 chr15 27039120 27039499 + 2 NA intron (NM_001270873, intron 3 of 5) MER31B|LTR|ERV1 68128 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 212-86 chr12 73975061 73975202 + 2 NA Intergenic L1M5|LINE|L1 317500 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 367-26 chr1 167813981 167814278 + 2 NA intron (NM_018417, intron 31 of 32) L1M4c|LINE|L1 92147 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 213-126 chr19 38462640 38462779 + 2 NA intron (NM_001042723, intron 20 of 104) intron (NM_001042723, intron 20 of 104) 29009 NM_000540 6261 Hs.466664 NM_000540 ENSG00000196218 RYR1 CCO|MHS|MHS1|PPP1R137|RYDR|RYR|RYR-1|SKRR ryanodine receptor 1 protein-coding 223-164 chr2 133146166 133146369 + 2 NA intron (NM_207481, intron 5 of 17) intron (NM_207481, intron 5 of 17) -119928 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 534-138 chr2 239697267 239697715 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -65369 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 241-14 chr1 105376110 105376344 + 2 NA Intergenic L1MB3|LINE|L1 242708 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 235-252 chr4 54437493 54437614 + 2 NA Intergenic Intergenic 104661 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 378-256 chr20 24111173 24111464 + 2 NA Intergenic L1M5|LINE|L1 -88449 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 298-91 chr12 17484426 17484585 + 2 NA Intergenic L1MA5|LINE|L1 104573 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 234-315 chr5 112810093 112810256 + 2 NA 5' UTR (NM_001354906, exon 9 of 17) 5' UTR (NM_001354906, exon 9 of 17) -51014 NM_001204193 6728 Hs.637001 NM_003135 ENSG00000153037 SRP19 - signal recognition particle 19 protein-coding 318-436 chr5 46275642 46275928 + 2 NA Intergenic ALR/Alpha|Satellite|centr -579405 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 302-302 chr3 177321712 177321905 + 2 NA non-coding (NR_047465, exon 2 of 2) non-coding (NR_047465, exon 2 of 2) 27366 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 462-300 chr9 108660628 108661071 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 195137 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 246-410 chr8 110536386 110536544 + 2 NA Intergenic L2a|LINE|L2 490968 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 324-374 chr3 190579394 190579716 + 2 NA intron (NR_157352, intron 3 of 10) intron (NR_157352, intron 3 of 10) 65470 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 346-95 chr12 21713806 21714063 + 2 NA Intergenic Intergenic -56079 NM_002300 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 372-257 chr2 133085184 133085429 + 2 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 169749 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 374-225 chr20 53342659 53342953 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) 157523 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 300-154 chr17 60263427 60263694 + 2 NA intron (NM_032582, intron 9 of 33) intron (NM_032582, intron 9 of 33) -31915 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 520-217 chr4 87813905 87814264 + 2 NA Intergenic L1PB1|LINE|L1 -7314 NM_001184694 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 327-471 chr7 109732402 109732687 + 2 NA Intergenic L1ME3D|LINE|L1 227669 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 222-187 chr2 136057463 136057639 + 2 NA Intergenic Intergenic 58684 NM_001008540 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 464-195 chr5 21026557 21026999 + 2 NA Intergenic Intergenic -411243 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 306-500 chr8 62906423 62906600 + 2 NA intron (NM_001304533, intron 4 of 6) THE1B|LTR|ERVL-MaLR -71350 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 506-119 chr19 37712290 37712720 + 2 NA intron (NM_032689, intron 1 of 4) AluJr|SINE|Alu 6683 NM_001172677 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 384-93 chr13 49679221 49679507 + 2 NA intron (NM_032565, intron 1 of 3) intron (NM_032565, intron 1 of 3) 12122 NM_032565 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 145-22 chr12 114023801 114023894 + 2 NA Intergenic Intergenic -57522 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 328-594 chr8 139824702 139824872 + 2 NA intron (NM_001160372, intron 21 of 22) AluSz6|SINE|Alu -121664 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 270-241 chr3 97432653 97432901 + 2 NA intron (NM_001080448, intron 6 of 17) THE1D|LTR|ERVL-MaLR -6830 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 357-435 chr8 63954313 63954628 + 2 NA intron (NR_125826, intron 4 of 4) LTR1E|LTR|ERV1 185040 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 518-98 chr15 97653796 97654244 + 2 NA Intergenic MIRb|SINE|MIR -93322 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 416-344 chr8 131066827 131067048 + 2 NA Intergenic L1PA3|LINE|L1 -26028 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 397-225 chr4 67153405 67153604 + 2 NA Intergenic Intergenic 268496 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 313-77 chr11 28113071 28113329 + 2 NA intron (NM_001113528, intron 2 of 6) intron (NM_001113528, intron 2 of 6) 4812 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 198-253 chr8 137466544 137466688 + 2 NA Intergenic Intergenic -53028 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 308-362 chr4 137455099 137455278 + 2 NA Intergenic LTR38B|LTR|ERV1 77306 NM_001300828 54510 Hs.591691 NM_019035 ENSG00000189184 PCDH18 PCDH68L protocadherin 18 protein-coding 463-158 chr2 226401786 226402149 + 2 NA Intergenic Intergenic 256826 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 310-178 chr16 76740823 76741058 + 2 NA Intergenic L1P4a|LINE|L1 105942 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 351-525 chrX 38665786 38666089 + 2 NA intron (NM_004615, intron 1 of 7) intron (NM_004615, intron 1 of 7) 104459 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 248-421 chr8 141880276 141880467 + 2 NA Intergenic Intergenic -94058 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 214-194 chr22 22210111 22210263 + 2 NA Intergenic AluYc|SINE|Alu -34599 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 223-284 chr5 106887944 106888086 + 2 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 122999 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 341-252 chr2 72464735 72464918 + 2 NA intron (NM_001321729, intron 18 of 22) L1MEg1|LINE|L1 -316964 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 325-76 chr10 86256692 86256981 + 2 NA intron (NM_017551, intron 2 of 15) LTR33|LTR|ERVL 7952 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 451-158 chr3 167192429 167192706 + 2 NA Intergenic L1M3f|LINE|L1 187716 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 250-250 chr21 22622927 22623155 + 2 NA Intergenic Intergenic -456243 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 502-261 chr8 78006195 78006612 + 2 NA Intergenic Intergenic -509937 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 323-48 chr10 31300599 31300857 + 2 NA Intergenic Intergenic -17689 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 242-240 chr3 98101273 98101453 + 2 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat 14190 NM_054106 81050 Hs.554715 NM_054106 ENSG00000196578 OR5AC2 HSA1 olfactory receptor family 5 subfamily AC member 2 protein-coding 338-76 chr10 105892174 105892373 + 2 NA Intergenic Intergenic -71940 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 525-36 chr11 7327967 7328296 + 2 NA intron (NM_175733, intron 3 of 6) L1ME3E|LINE|L1 76227 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 279-242 chr3 6625791 6625997 + 2 NA Intergenic LTR37A|LTR|ERV1 179555 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 230-287 chr5 15135984 15136201 + 2 NA Intergenic L1ME3A|LINE|L1 130468 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 156-23 chr11 121619377 121619494 + 2 NA intron (NM_003105, intron 42 of 47) L1ME4b|LINE|L1 167121 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 549-218 chr8 137422667 137423010 + 2 NA Intergenic L1MEf|LINE|L1 -9250 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 249-391 chr7 100651053 100651247 + 2 NA intron (NR_134539, intron 4 of 13) HAL1|LINE|L1 5298 NM_016188 51412 Hs.259831 NM_016188 ENSG00000077080 ACTL6B ACTL6|BAF53B|arpNalpha actin like 6B protein-coding 343-36 chr1 232066240 232066431 + 2 NA Intergenic L1ME3|LINE|L1 140501 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 227-307 chr6 38286049 38286264 + 2 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -195440 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 1345-3 chr21 30831485 30832535 + 2 NA Intergenic MIR|SINE|MIR -2251 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 475-286 chr8 106329672 106329995 + 2 NA intron (NM_018002, intron 1 of 15) MIR|SINE|MIR 59655 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 410-318 chr8 135325913 135326305 + 2 NA Intergenic Intergenic 91978 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 277-302 chr4 178543992 178544218 + 2 NA Intergenic Intergenic -636169 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 265-113 chr14 82119571 82119778 + 2 NA Intergenic Intergenic -376536 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 266-318 chr5 25866703 25866867 + 2 NA Intergenic Intergenic 675832 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 199-189 chr4 120097135 120097268 + 2 NA Intergenic Intergenic -30353 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 317-110 chr12 43208135 43208367 + 2 NA Intergenic L2c|LINE|L2 52936 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 324-486 chr7 33825626 33825858 + 2 NA Intergenic Intergenic -79173 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 340-292 chr2 173319661 173319929 + 2 NA Intergenic L1MEf|LINE|L1 -35077 NM_031942 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 223-170 chr2 177828088 177828204 + 2 NA intron (NM_001077197, intron 7 of 20) intron (NM_001077197, intron 7 of 20) 60610 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 545-130 chr20 37641858 37642399 + 2 NA Intergenic MamRep488|DNA|hAT-Tip100 -19009 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 146-68 chr4 157001332 157001429 + 2 NA Intergenic Intergenic -29581 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 349-404 chr5 17261187 17261518 + 2 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 43721 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 313-287 chr2 194719135 194719301 + 2 NA Intergenic Intergenic -11377 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 299-217 chr2 120198930 120199171 + 2 NA Intergenic L1MB4|LINE|L1 24350 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 301-478 chr9 24713595 24713758 + 2 NA Intergenic Intergenic -167779 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 143-42 chr2 111631105 111631203 + 2 NA Intergenic L1MDa|LINE|L1 -135993 NR_136163 541471 Hs.560805 NR_015395 ENSG00000172965 MIR4435-2HG AGD2|LINC00978|MIR4435-1HG|MORRBID|lncRNA-AWPPH MIR4435-2 host gene ncRNA 268-424 chr8 138168569 138168831 + 2 NA intron (NM_015912, intron 11 of 19) intron (NM_015912, intron 11 of 19) -85155 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 273-295 chr3 82689180 82689414 + 2 NA Intergenic Intergenic 703155 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 231-214 chr3 6064080 6064204 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 741307 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 516-17 chr10 20687230 20687633 + 2 NA Intergenic AluSz|SINE|Alu 135461 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 637-72 chr20 11153946 11154507 + 2 NA Intergenic Intergenic 119157 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 467-15 chr1 221579203 221579530 + 2 NA Intergenic L1MEc|LINE|L1 157534 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 274-108 chr13 23095524 23095689 + 2 NA Intergenic L2a|LINE|L2 -85315 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 372-72 chr11 37945199 37945513 + 2 NA intron (NR_135110, intron 1 of 2) L1PB4|LINE|L1 6755 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 345-399 chr5 1990826 1991063 + 2 NA Intergenic L1MEc|LINE|L1 103613 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 402-22 chr1 233488202 233488495 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -125758 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 461-50 chr11 87377505 87377807 + 2 NA Intergenic LTR28|LTR|ERV1 339722 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 308-115 chr12 114971228 114971426 + 2 NA Intergenic AluSz6|SINE|Alu -287152 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 194-48 chr13 44170430 44170529 + 2 NA Intergenic L1M1|LINE|L1 -9222 NM_024058 79024 Hs.730073 NM_024058 ENSG00000139656 SMIM2 C13orf44 small integral membrane protein 2 protein-coding 512-235 chr6 54677104 54677522 + 2 NA Intergenic Intergenic -169458 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 336-564 chr8 135271843 135272130 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 37855 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 132-25 chr14 54632171 54632272 + 2 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) 64609 NM_001161576 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 483-90 chr17 53680713 53681003 + 2 NA Intergenic L1MB2|LINE|L1 -142069 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 644-11 chr11 135051356 135051740 + 2 NA Intergenic Intergenic 66196 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 234-191 chr2 156940724 156940922 + 2 NA Intergenic (ATAC)n|Simple_repeat|Simple_repeat -316882 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 508-190 chr5 82893438 82893801 + 2 NA Intergenic Intergenic -33783 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 217-130 chr15 95335313 95335494 + 2 NA Intergenic HAL1|LINE|L1 -8303 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 359-44 chr10 23988906 23989193 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) -219742 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 550-105 chr2 7432334 7432814 + 2 NA intron (NR_038432, intron 4 of 5) intron (NR_038432, intron 4 of 5) 11313 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 174-29 chr12 23698809 23698916 + 2 NA intron (NM_152989, intron 9 of 17) L1ME1|LINE|L1 -114276 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 367-164 chr17 35508839 35509093 + 2 NA intron (NM_001363830, intron 2 of 4) intron (NM_001363830, intron 2 of 4) -21227 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 497-175 chr3 56938268 56938617 + 2 NA intron (NM_001128615, intron 3 of 12) intron (NM_001128615, intron 3 of 12) -1598 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 251-61 chr12 23371184 23371408 + 2 NA Intergenic Intergenic 195660 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 403-91 chr14 41452920 41453200 + 2 NA Intergenic Intergenic -153796 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 324-44 chr10 5327498 5327816 + 2 NA Intergenic Intergenic -37309 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 333-404 chr4 94249405 94249674 + 2 NA intron (NM_001128429, intron 6 of 23) intron (NM_001128429, intron 6 of 23) -3770 NM_001254949 56916 Hs.410406 NM_020159 ENSG00000163104 SMARCAD1 ADERM|BASNS|ETL1|HEL1|HRZ SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 protein-coding 255-443 chr8 132856798 132856994 + 2 NA Intergenic L1MB8|LINE|L1 -10062 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 254-248 chr3 104883150 104883336 + 2 NA Intergenic Intergenic -483470 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 411-141 chr2 41315883 41316105 + 2 NA Intergenic Intergenic -561561 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 1237-2 chr11 43528186 43529178 + 2 NA Intergenic LTR67B|LTR|ERVL -30974 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 234-368 chr7 52453993 52454186 + 2 NA Intergenic Intergenic -581544 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 299-247 chr2 225444039 225444241 + 2 NA intron (NM_001371273, intron 3 of 7) intron (NM_001371273, intron 3 of 7) 43254 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 636-29 chr12 39254521 39254989 + 2 NA Intergenic AluJb|SINE|Alu 188365 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 383-73 chr12 3428155 3428481 + 2 NA intron (NM_001256536, intron 1 of 9) Harlequin-int|LTR|ERV1 46969 NM_001256536 56341 Hs.504530 NM_019854 ENSG00000111218 PRMT8 HRMT1L3|HRMT1L4 protein arginine methyltransferase 8 protein-coding 229-412 chr9 37584443 37584621 + 2 NA Intergenic Intergenic 8065 NM_001001790 401505 Hs.130774 NM_001001790 ENSG00000175768 TOMM5 C9orf105|Tom5|bA613M10.3 translocase of outer mitochondrial membrane 5 protein-coding 271-166 chr17 65340472 65340703 + 2 NA Intergenic L1PA15|LINE|L1 -116954 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 372-462 chr7 72760795 72761048 + 2 NA intron (NM_001145440, intron 7 of 13) MER65-int|LTR|ERV1 63018 NR_039793 100616310 NR_039793 ENSG00000266525 MIR4650-1 - microRNA 4650-1 ncRNA 136-9 chr10 54818473 54818573 + 2 NA intron (NM_001354404, intron 4 of 34) MLT1G|LTR|ERVL-MaLR -17232 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 419-20 chr1 182275622 182275899 + 2 NA intron (NR_104175, intron 2 of 2) MLT1B|LTR|ERVL-MaLR 38301 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 347-531 chr8 134425698 134425884 + 2 NA Intergenic Intergenic -172280 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 241-189 chr2 88442090 88442245 + 2 NA Intergenic Intergenic 10526 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 235-138 chr17 61219627 61219852 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 147965 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 506-255 chr6 117985185 117985610 + 2 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 78133 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 607-85 chr2 224113051 224113464 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -73938 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 486-311 chr9 93875969 93876329 + 2 NA Intergenic L1M4|LINE|L1 56792 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 365-165 chr18 10974855 10975168 + 2 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) 173751 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 372-40 chr10 31502737 31502937 + 2 NA intron (NM_001323638, intron 8 of 12) intron (NM_001323638, intron 8 of 12) -103082 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 335-528 chr8 60929680 60929970 + 2 NA Intergenic Intergenic 37923 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 323-510 chr7 96619208 96619394 + 2 NA intron (NR_163950, intron 3 of 6) L1M2a1|LINE|L1 45037 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 404-128 chr17 56532281 56532576 + 2 NA Intergenic L2a|LINE|L2 -61271 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 173-64 chr2 31269656 31269811 + 2 NA TTS (NM_014600) TTS (NM_014600) 35581 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 157-56 chr2 13259859 13259985 + 2 NA Intergenic HERV16-int|LTR|ERVL -252909 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 187-40 chr12 46226143 46226319 + 2 NA intron (NM_030674, intron 5 of 16) L1MC5|LINE|L1 40285 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 336-272 chr2 76562356 76562530 + 2 NA Intergenic Intergenic -423522 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 395-138 chr17 62864813 62865057 + 2 NA Intergenic Intergenic 56433 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 471-110 chr18 13922643 13922978 + 2 NA Intergenic Intergenic -7103 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 299-158 chr16 28867582 28867797 + 2 NA intron (NM_015503, intron 2 of 8) AluJo|SINE|Alu 3696 NM_015503 25970 Hs.15744 NM_015503 ENSG00000178188 SH2B1 PSM|SH2B SH2B adaptor protein 1 protein-coding 446-177 chr3 7496500 7496897 + 2 NA intron (NM_000844, intron 7 of 9) L1MC4|LINE|L1 38586 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 230-151 chr18 1906054 1906257 + 2 NA Intergenic Intergenic -546526 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 409-286 chr7 132526999 132527311 + 2 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) 49315 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 394-323 chr8 64117769 64118086 + 2 NA intron (NR_125826, intron 4 of 4) L1MA4A|LINE|L1 250631 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 371-226 chr20 62095953 62096169 + 2 NA Intergenic FLAM_C|SINE|Alu -26414 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 300-434 chr7 67960137 67960383 + 2 NA Intergenic L2a|LINE|L2 -59993 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 602-116 chr6 54453857 54454302 + 2 NA Intergenic Intergenic 145638 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 287-164 chr17 64374705 64374937 + 2 NA intron (NM_000442, intron 4 of 15) intron (NM_000442, intron 4 of 15) 16039 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 383-182 chr2 45270123 45270379 + 2 NA Intergenic Intergenic -15310 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 299-413 chr7 31971365 31971617 + 2 NA intron (NM_001322059, intron 3 of 17) MIRb|SINE|MIR 98916 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 192-148 chr4 91888626 91888786 + 2 NA Intergenic Intergenic 388596 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 603-169 chr8 120182681 120183137 + 2 NA intron (NM_021110, intron 5 of 47) AluSx3|SINE|Alu 57807 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 337-563 chr8 134994429 134994616 + 2 NA Intergenic Intergenic 144587 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 306-84 chr11 92187366 92187537 + 2 NA Intergenic L1MC3|LINE|L1 -37583 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 382-100 chr13 113011000 113011346 + 2 NA intron (NM_001320815, intron 1 of 30) intron (NM_001320815, intron 1 of 30) 9459 NM_001320815 23263 Hs.170422 NM_024979 ENSG00000126217 MCF2L ARHGEF14|DBS|OST MCF.2 cell line derived transforming sequence like protein-coding 192-124 chr20 59472411 59472564 + 2 NA Intergenic Intergenic -105022 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 1052-24 chr8 135099045 135099776 + 2 NA Intergenic L1MA8|LINE|L1 -134721 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 379-396 chrX 127372527 127372833 + 2 NA Intergenic L1PBa|LINE|L1 552951 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 215-100 chr16 49238008 49238183 + 2 NA Intergenic MIRb|SINE|MIR 43743 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 335-131 chr12 98868037 98868224 + 2 NA intron (NM_152788, intron 17 of 25) intron (NM_152788, intron 17 of 25) 26644 NM_001352217 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 641-14 chr10 90523272 90523674 + 2 NA intron (NR_110657, intron 2 of 6) L1MA3|LINE|L1 17332 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 427-94 chr17 29909776 29910070 + 2 NA intron (NM_001282129, intron 1 of 15) (TATTGT)n|Simple_repeat|Simple_repeat -19980 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 352-158 chr14 87659900 87660241 + 2 NA Intergenic L1M1|LINE|L1 -4776 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 373-248 chr22 27028856 27029058 + 2 NA Intergenic L1MB5|LINE|L1 31561 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 344-469 chr7 138336482 138336704 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -123666 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 237-358 chr7 83058531 83058663 + 2 NA intron (NM_033026, intron 3 of 24) MIR|SINE|MIR 104287 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 317-447 chr7 35430922 35431140 + 2 NA Intergenic L1P4d|LINE|L1 117176 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 134-25 chr13 46923207 46923308 + 2 NA Intergenic L1MDa|LINE|L1 -26181 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 594-4 chr1 91469653 91470137 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -30952 NM_001134419 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 472-6 chr1 66861120 66861515 + 2 NA intron (NM_024763, intron 7 of 16) intron (NM_024763, intron 7 of 16) -60058 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 229-148 chr17 62363151 62363323 + 2 NA Intergenic Intergenic -6981 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 496-279 chr8 58734227 58734583 + 2 NA Intergenic AluSg4|SINE|Alu -74552 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 598-49 chr15 91122476 91123014 + 2 NA intron (NM_001323039, intron 1 of 12) L1MA8|LINE|L1 20949 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 329-369 chr3 87567955 87568148 + 2 NA Intergenic AluSq2|SINE|Alu -224655 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 289-139 chr14 65640401 65640666 + 2 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 169431 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 263-116 chr15 27546356 27546522 + 2 NA Intergenic MER57F|LTR|ERV1 -385120 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 348-163 chr15 97678216 97678486 + 2 NA Intergenic Intergenic -117653 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 171-119 chr7 15351706 15351858 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 210233 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 337-339 chr3 20248097 20248388 + 2 NA Intergenic L1PA16|LINE|L1 -62009 NM_001012411 151648 Hs.105153 NM_138484 ENSG00000129810 SGO1 CAID|NY-BR-85|SGO|SGOL1 shugoshin 1 protein-coding 284-356 chr6 118597647 118597861 + 2 NA intron (NM_001042475, intron 2 of 12) intron (NM_001042475, intron 2 of 12) 49458 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 409-276 chr7 15358598 15358969 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 203232 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 376-425 chr9 72631568 72631889 + 2 NA intron (NM_138691, intron 4 of 23) intron (NM_138691, intron 4 of 23) 109927 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 371-371 chr8 4531499 4531831 + 2 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 463249 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 506-166 chr20 39162483 39162841 + 2 NA Intergenic L1M3|LINE|L1 62086 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 145-38 chr17 68912517 68912657 + 2 NA intron (NM_001288985, intron 17 of 39) L1MA3|LINE|L1 42805 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 367-350 chr5 31674181 31674501 + 2 NA intron (NM_178140, intron 1 of 24) Charlie18a|DNA|hAT-Charlie 35210 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 264-44 chr10 50500307 50500520 + 2 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 123543 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 364-382 chr6 80734576 80734781 + 2 NA Intergenic Intergenic 628007 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 117-4 chr10 57775171 57775267 + 2 NA Intergenic Intergenic -470660 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 430-71 chr13 26078311 26078633 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -18950 NR_146971 107984009 NR_146971 LINC00415 - long intergenic non-protein coding RNA 415 ncRNA 206-287 chr9 103272804 103272973 + 2 NA intron (NR_121578, intron 5 of 9) L1PA16|LINE|L1 52145 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 414-81 chr14 34424292 34424523 + 2 NA Intergenic Intergenic 37833 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 479-272 chr9 15816102 15816445 + 2 NA intron (NM_001355547, intron 20 of 24) intron (NM_001355547, intron 20 of 24) 252295 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 316-400 chr4 73761610 73761881 + 2 NA Intergenic L1ME3A|LINE|L1 21176 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 548-44 chr12 5355892 5356306 + 2 NA Intergenic L1MB7|LINE|L1 -76009 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 669-80 chr4 64630481 64630913 + 2 NA Intergenic L1MEf|LINE|L1 -221237 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 273-7 chr1 43054719 43054876 + 2 NA Intergenic AluSp|SINE|Alu -93107 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 355-118 chr11 133689041 133689344 + 2 NA Intergenic L1MB7|LINE|L1 121184 NR_120444 646522 Hs.560000 NR_120444 ENSG00000255258 LINC02743 - long intergenic non-protein coding RNA 2743 ncRNA 404-49 chr10 81976333 81976699 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 98829 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 252-11 chr1 93664573 93664704 + 2 NA intron (NM_001261409, intron 2 of 11) intron (NM_001261409, intron 2 of 11) 16732 NM_001261409 8412 Hs.36958 NM_003567 ENSG00000137936 BCAR3 AND-34|NSP2|SH2D3B BCAR3 adaptor protein, NSP family member protein-coding 161-68 chr3 83803746 83803843 + 2 NA Intergenic Intergenic 1065781 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 211-25 chr10 15733708 15733865 + 2 NA Intergenic L1MC3|LINE|L1 -13451 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 275-335 chr7 54821315 54821494 + 2 NA Intergenic Intergenic 62091 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 124-21 chr13 37790059 37790142 + 2 NA intron (NM_003306, intron 1 of 10) intron (NM_003306, intron 1 of 10) 80325 NM_001135956 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 257-424 chr8 126048672 126048871 + 2 NA Intergenic Intergenic -97574 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 428-272 chr7 27090436 27090688 + 2 NA Intergenic Intergenic 5438 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 341-332 chr3 55754769 55754945 + 2 NA intron (NR_132749, intron 13 of 17) intron (NR_132749, intron 13 of 17) -95388 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 583-172 chr9 32203388 32203786 + 2 NA Intergenic Intergenic -181016 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 328-180 chr15 70670982 70671293 + 2 NA intron (NM_018003, intron 14 of 18) intron (NM_018003, intron 14 of 18) 31145 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 343-139 chr14 53596079 53596255 + 2 NA Intergenic MER33|DNA|hAT-Charlie 352317 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 390-25 chr1 239948187 239948514 + 2 NA Intergenic L1PA13|LINE|L1 -48478 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 246-149 chr17 34785260 34785443 + 2 NA Intergenic Intergenic 176109 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 277-393 chr7 154383495 154383724 + 2 NA intron (NR_157196, intron 1 of 25) AluSx|SINE|Alu 78450 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 510-154 chr2 133393622 133393984 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 127608 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 315-178 chr16 82589559 82589774 + 2 NA Intergenic Intergenic -37303 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 257-141 chr16 76997037 76997182 + 2 NA Intergenic Intergenic 128173 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 302-165 chr17 33397336 33397595 + 2 NA intron (NM_001094, intron 1 of 9) L2c|LINE|L2 -104477 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 338-606 chrX 85213101 85213341 + 2 NA intron (NR_110651, intron 3 of 3) intron (NR_110651, intron 3 of 3) 2515 NR_110651 101928128 Hs.636014 NR_110651 LOC101928128 - uncharacterized LOC101928128 ncRNA 330-546 chr9 24651583 24651753 + 2 NA Intergenic L1M3a|LINE|L1 -105771 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 343-101 chr12 39693551 39693726 + 2 NA intron (NM_001031748, intron 11 of 12) L1MC5a|LINE|L1 67455 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 523-87 chr15 61756155 61756525 + 2 NA Intergenic Intergenic 26422 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 250-86 chr12 29426898 29427060 + 2 NA intron (NR_073172, intron 1 of 1) intron (NR_073172, intron 1 of 1) 37685 NR_073170 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 370-438 chr8 77243545 77243769 + 2 NA Intergenic Intergenic -207040 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 612-8 chr1 231497605 231498136 + 2 NA Intergenic Intergenic -21345 NR_033826 645339 Hs.382049 NR_033826 SNRPD2P2 - small nuclear ribonucleoprotein D2 pseudogene 2 pseudo 141-72 chr5 38062886 38062992 + 2 NA intron (NR_147009, intron 2 of 2) intron (NR_147009, intron 2 of 2) 37242 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 190-173 chr8 63974189 63974317 + 2 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 204823 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 363-408 chr7 24443901 24444204 + 2 NA Intergenic L2a|LINE|L2 -129400 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 271-63 chr11 8895389 8895654 + 2 NA intron (NM_005418, intron 1 of 22) L1MB3|LINE|L1 15430 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 297-84 chr11 98131295 98131484 + 2 NA Intergenic Intergenic -889560 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 389-186 chr2 145706291 145706514 + 2 NA Intergenic L1MA9|LINE|L1 -880655 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 340-460 chr5 108803556 108803742 + 2 NA intron (NM_001308028, intron 3 of 17) L1PA16|LINE|L1 54701 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 489-241 chr7 62812970 62813282 + 2 NA Intergenic ALR/Alpha|Satellite|centr 490930 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 481-103 chr15 83168618 83169057 + 2 NA intron (NM_016073, intron 1 of 5) L1PA16|LINE|L1 38986 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 264-203 chr2 75146544 75146752 + 2 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 52872 NM_015727 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 293-83 chr12 47397733 47397995 + 2 NA Intergenic L1PA16|LINE|L1 -17144 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 586-172 chrX 79313054 79313476 + 2 NA Intergenic L1MA3|LINE|L1 54069 NM_004867 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 490-62 chr12 733179 733499 + 2 NA Intergenic AluJb|SINE|Alu -19240 NM_014823 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 504-207 chr5 10764796 10765171 + 2 NA Intergenic Intergenic -3749 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 874-22 chr4 32611216 32611772 + 2 NA Intergenic Intergenic 260456 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 316-370 chr3 165235715 165235891 + 2 NA intron (NR_125764, intron 1 of 5) L1MD2|LINE|L1 28843 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 486-121 chr18 7107300 7107756 + 2 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 10269 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 431-117 chr2 12337467 12337710 + 2 NA intron (NR_110196, intron 4 of 5) L2c|LINE|L2 138458 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 364-368 chr5 156869685 156869984 + 2 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat 19539 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 226-77 chr13 24790262 24790399 + 2 NA intron (NM_031277, intron 9 of 35) intron (NM_031277, intron 9 of 35) 26161 NM_031277 56163 Hs.97464 NM_031277 ENSG00000132972 RNF17 Mmip-2|SPATA23|TDRD4 ring finger protein 17 protein-coding 505-174 chr20 15189658 15190005 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -7009 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 267-305 chr4 166343027 166343179 + 2 NA Intergenic AluSg|SINE|Alu 469866 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 305-319 chr21 23184548 23184818 + 2 NA Intergenic L1M1|LINE|L1 105399 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 341-277 chr2 184962872 184963205 + 2 NA Intergenic L1MCb|LINE|L1 204034 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 486-98 chr15 67872864 67873237 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -33005 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 364-319 chr4 155510266 155510490 + 2 NA Intergenic MIRb|SINE|MIR -133413 NM_001039580 79884 Hs.61271 NM_001039580 ENSG00000164114 MAP9 ASAP microtubule associated protein 9 protein-coding 255-79 chr12 58373149 58373349 + 2 NA Intergenic Intergenic -218453 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 200-164 chr22 22916242 22916393 + 2 NA Intergenic Intergenic 28501 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 231-170 chr2 103885915 103886111 + 2 NA Intergenic L1ME3E|LINE|L1 522319 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 739-73 chr8 138408239 138408751 + 2 NA intron (NM_001362965, intron 1 of 19) Tigger1|DNA|TcMar-Tigger 88766 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 552-210 chr8 100646842 100647340 + 2 NA intron (NM_152628, intron 2 of 13) intron (NM_152628, intron 2 of 13) 2574 NM_152628 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 333-265 chr2 123831443 123831767 + 2 NA Intergenic L1M4c|LINE|L1 193569 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 349-306 chr21 28728599 28728884 + 2 NA Intergenic Intergenic 156626 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 374-324 chr5 152389105 152389406 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 16024 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 368-244 chr2 144587466 144587724 + 2 NA Intergenic Intergenic -63151 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 138-94 chr8 129016108 129016202 + 2 NA Intergenic Intergenic -50154 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 196-103 chr18 77230502 77230660 + 2 NA Intergenic L1PB1|LINE|L1 -19267 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 345-202 chr17 51612673 51612970 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 177394 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 265-384 chr8 35108673 35108865 + 2 NA Intergenic MIR|SINE|MIR -126706 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 340-559 chr8 137655141 137655353 + 2 NA Intergenic Intergenic -241659 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 349-216 chr18 44741083 44741399 + 2 NA intron (NM_001130110, intron 2 of 3) L2b|LINE|L2 60353 NM_015559 26040 Hs.435458 NM_015559 ENSG00000152217 SETBP1 MRD29|SEB SET binding protein 1 protein-coding 252-403 chr7 83663691 83663924 + 2 NA Intergenic Intergenic -14668 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 261-236 chr3 44586693 44586898 + 2 NA intron (NM_001351734, intron 2 of 6).2 intron (NM_001351734, intron 2 of 6).2 1831 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 386-123 chr16 61224983 61225221 + 2 NA Intergenic Intergenic -169336 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 350-314 chr3 76849281 76849488 + 2 NA Intergenic Intergenic -190715 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 292-120 chr13 40135193 40135387 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie -46519 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 567-79 chr19 37395157 37395549 + 2 NA Intergenic L1ME5|LINE|L1 24254 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 371-120 chr15 80266855 80267195 + 2 NA intron (NR_033833, intron 2 of 2) intron (NR_033833, intron 2 of 2) -14812 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 356-217 chr19 30165047 30165347 + 2 NA Intergenic Intergenic -207187 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 121-32 chr21 27450948 27451032 + 2 NA Intergenic Intergenic -271389 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 499-248 chr7 67407991 67408405 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 72222 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 658-59 chr18 73703402 73704049 + 2 NA Intergenic MER67D|LTR|ERV1 378784 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 332-105 chr11 109898215 109898504 + 2 NA Intergenic L1MB1|LINE|L1 -195033 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 248-83 chr12 33788046 33788210 + 2 NA Intergenic Intergenic -234368 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 396-201 chr21 27511255 27511618 + 2 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -210943 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 229-162 chr18 67924365 67924559 + 2 NA Intergenic Intergenic -109640 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 350-280 chr20 55707956 55708290 + 2 NA Intergenic Intergenic -280926 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 338-401 chr5 2549513 2549842 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -162914 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 297-490 chr8 123934360 123934515 + 2 NA intron (NM_001039112, intron 1 of 40) L1MC4|LINE|L1 82450 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 311-525 chr8 125964397 125964700 + 2 NA Intergenic Intergenic -13351 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 392-57 chr12 25287390 25287757 + 2 NA Intergenic L2c|LINE|L2 -36644 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 285-309 chr4 81804471 81804640 + 2 NA Intergenic LTR88a|LTR|Gypsy? -332648 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 199-217 chr6 132112957 132113113 + 2 NA Intergenic L1ME3A|LINE|L1 2228 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 486-58 chr12 37983577 37984038 + 2 NA Intergenic ALR/Alpha|Satellite|centr -332967 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 309-61 chr10 85693487 85693731 + 2 NA intron (NM_017551, intron 12 of 15) L1PB4|LINE|L1 115878 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 440-4 chr1 67507509 67507905 + 2 NA Intergenic (ATAA)n|Simple_repeat|Simple_repeat -77305 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 441-93 chr16 35712857 35713221 + 2 NA Intergenic HSAT4|Satellite|centr -33513 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 168-105 chr7 51005388 51005513 + 2 NA Intergenic L2b|LINE|L2 -211997 NM_001371008 295-138 chr14 81703972 81704257 + 2 NA Intergenic L2a|LINE|L2 39024 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 343-437 chr5 88007675 88008002 + 2 NA Intergenic Intergenic 261007 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 475-84 chr14 84163186 84163517 + 2 NA Intergenic Intergenic -1108581 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 332-307 chr22 17547994 17548248 + 2 NA intron (NM_001290046, intron 16 of 18) (T)n|Simple_repeat|Simple_repeat -15318 NM_001303484 83733 Hs.282982 NM_031481 ENSG00000182902 SLC25A18 GC2 solute carrier family 25 member 18 protein-coding 252-313 chr5 3675496 3675707 + 2 NA Intergenic MIRb|SINE|MIR 79769 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 230-309 chr5 118116179 118116383 + 2 NA intron (NR_104997, intron 2 of 2) MER90|LTR|ERV1 -166293 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 198-8 chr1 111651109 111651258 + 2 NA intron (NM_001010935, intron 2 of 8) intron (NM_001010935, intron 2 of 8) -13611 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 160-93 chr6 47052666 47052816 + 2 NA Intergenic Ricksha|DNA|MULE-MuDR -10409 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 421-163 chr20 11531792 11532079 + 2 NA Intergenic L1PA17|LINE|L1 -258552 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 438-286 chr8 135222368 135222643 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -11626 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 254-375 chr7 31202354 31202534 + 2 NA Intergenic Intergenic 138282 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 204-279 chr8 26684774 26684938 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 106451 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 288-306 chr4 117853402 117853580 + 2 NA intron (NR_147154, intron 1 of 1) L1MA4A|LINE|L1 19090 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 306-412 chr5 150955599 150955766 + 2 NA Intergenic L1M3e|LINE|L1 -9098 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 380-41 chr10 52535191 52535419 + 2 NA Intergenic Intergenic -64772 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 372-374 chr4 106788803 106789162 + 2 NA Intergenic L1M4|LINE|L1 247331 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 377-297 chr4 160794755 160794968 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -1017077 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 435-56 chr12 14357240 14357581 + 2 NA Intergenic AluSc|SINE|Alu -8222 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 214-323 chr8 83136939 83137127 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 224929 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 536-148 chr20 52331330 52331666 + 2 NA Intergenic Intergenic -139513 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 416-342 chr8 121545214 121545554 + 2 NA Intergenic L1PA8A|LINE|L1 -93962 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 677-25 chr13 58615889 58616495 + 2 NA Intergenic Intergenic -383075 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 288-104 chr13 104653672 104653943 + 2 NA Intergenic Intergenic -812060 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 510-22 chr1 233890803 233891138 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -13706 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 305-40 chr1 209317112 209317338 + 2 NA Intergenic Intergenic -8231 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 308-248 chr2 158241748 158241914 + 2 NA intron (NM_138803, intron 10 of 13) Tigger10|DNA|TcMar-Tigger 75181 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 159-94 chr8 100983463 100983563 + 2 NA Intergenic L1ME3|LINE|L1 -30131 NM_003406 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 355-369 chr4 66991504 66991830 + 2 NA Intergenic Intergenic 430333 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 252-309 chr4 161390774 161391002 + 2 NA intron (NM_001128428, intron 14 of 14) intron (NM_001128428, intron 14 of 14) -631845 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 278-362 chr6 37974764 37974965 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 155137 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 298-36 chr10 20117686 20117914 + 2 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 301368 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 395-20 chr1 196403108 196403486 + 2 NA intron (NM_001287820, intron 12 of 26) L1MC2|LINE|L1 179184 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 440-54 chr12 128649035 128649268 + 2 NA intron (NM_001136103, intron 4 of 8) intron (NM_001136103, intron 4 of 8) 174807 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 127-46 chr2 55087350 55087474 + 2 NA intron (NM_001321904, intron 1 of 9) L1ME3Cz|LINE|L1 -36140 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 228-47 chr10 109067675 109067825 + 2 NA Intergenic L2c|LINE|L2 855496 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 436-123 chr19 57981856 57982152 + 2 NA intron (NM_001348025, intron 6 of 6) intron (NM_001348025, intron 6 of 6) -7470 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 257-83 chr12 14313463 14313622 + 2 NA Intergenic Intergenic -52090 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 357-418 chr7 73387951 73388130 + 2 NA Intergenic L1M4b|LINE|L1 -45738 NM_003508 8326 Hs.647029 NM_003508 ENSG00000188763 FZD9 CD349|FZD3 frizzled class receptor 9 protein-coding 337-521 chr7 49520086 49520306 + 2 NA Intergenic Intergenic -253442 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 440-231 chr7 8124474 8124878 + 2 NA intron (NR_146928, intron 13 of 14) intron (NR_146928, intron 13 of 14) 137376 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 349-79 chr10 97944488 97944690 + 2 NA intron (NM_001206528, intron 2 of 14) MLT1H1|LTR|ERVL-MaLR -68692 NR_162124 113839520 NR_162124 MIR3085 - microRNA 3085 ncRNA 638-160 chr8 117701931 117702332 + 2 NA Intergenic Intergenic 181418 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 233-314 chr5 123884094 123884219 + 2 NA Intergenic L2a|LINE|L2 338739 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 429-321 chr8 142372327 142372637 + 2 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 30700 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 350-123 chr14 20757118 20757327 + 2 NA Intergenic Intergenic -11182 NM_022360 64184 Hs.525202 NM_022360 ENSG00000181552 EDDM3B EP3B|FAM12B|HE3-BETA|HE3B|RAM2 epididymal protein 3B protein-coding 199-205 chr5 124110084 124110230 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 328363 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 506-36 chr10 44514275 44514591 + 2 NA Intergenic Intergenic -129336 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 420-14 chr1 162924162 162924542 + 2 NA Intergenic Intergenic -55537 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 652-111 chr7 134477949 134478350 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -18910 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 177-78 chr2 122440429 122440563 + 2 NA Intergenic L1ME3A|LINE|L1 632985 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 235-291 chr5 98412073 98412240 + 2 NA Intergenic L2b|LINE|L2 -250917 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 189-18 chr10 56995976 56996144 + 2 NA Intergenic Intergenic 308499 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 324-562 chr9 30897306 30897586 + 2 NA Intergenic LTR37A|LTR|ERV1 484044 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 364-273 chr3 42137220 42137537 + 2 NA intron (NM_001349247, intron 2 of 16) intron (NM_001349247, intron 2 of 16) -11857 NM_001265609 22906 Hs.535711 NM_014965 ENSG00000182606 TRAK1 EIEE68|MILT1|OIP106 trafficking kinesin protein 1 protein-coding 315-199 chr18 52068855 52069110 + 2 NA Intergenic Intergenic -271215 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 209-274 chr6 74636680 74636861 + 2 NA intron (NR_110856, intron 2 of 3) intron (NR_110856, intron 2 of 3) 492012 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 525-139 chr20 37434321 37434821 + 2 NA Intergenic L1ME3G|LINE|L1 85732 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 554-209 chr8 139765564 139766004 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -62661 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 520-210 chr4 43670001 43670438 + 2 NA Intergenic Intergenic -177676 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 617-124 chr7 145962863 145963333 + 2 NA Intergenic L1M1|LINE|L1 -811173 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 629-126 chr8 68293870 68294412 + 2 NA Intergenic L1MC3|LINE|L1 -36232 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 421-304 chr8 104354921 104355174 + 2 NA exon (NM_030788, exon 3 of 4) exon (NM_030788, exon 3 of 4) 15221 NM_030788 81501 Hs.652230 NM_030788 ENSG00000164935 DCSTAMP FIND|TM7SF4|hDC-STAMP dendrocyte expressed seven transmembrane protein protein-coding 556-219 chr8 72552407 72552821 + 2 NA intron (NM_004770, intron 1 of 2) intron (NM_004770, intron 1 of 2) 15389 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 319-345 chr3 155361340 155361563 + 2 NA Intergenic LTR1|LTR|ERV1 -67768 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 297-278 chr22 26314566 26314768 + 2 NA intron (NM_001184776, intron 9 of 14) intron (NM_001184776, intron 9 of 14) -114593 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 353-389 chr4 133831307 133831527 + 2 NA Intergenic Intergenic 370372 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 415-296 chr8 131949082 131949485 + 2 NA intron (NR_136616, intron 4 of 23) MIRb|SINE|MIR 32510 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 200-275 chr8 115311310 115311483 + 2 NA Intergenic Intergenic 356617 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 244-26 chr10 15592957 15593122 + 2 NA intron (NM_001291494, intron 20 of 28) intron (NM_001291494, intron 20 of 28) 126883 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 1036-11 chr17 71563696 71564324 + 2 NA Intergenic Intergenic -361831 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 392-330 chr8 110739788 110740139 + 2 NA Intergenic L1M2|LINE|L1 287470 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 317-493 chr8 106714992 106715279 + 2 NA intron (NM_181354, intron 9 of 13) L1ME3|LINE|L1 -10972 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 318-465 chr5 162817919 162818103 + 2 NA Intergenic Intergenic -619560 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 289-254 chr2 210914288 210914473 + 2 NA Intergenic L1PA16|LINE|L1 296809 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 318-363 chr3 94956640 94956845 + 2 NA intron (NR_015400, intron 1 of 7) intron (NR_015400, intron 1 of 7) 18479 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 193-82 chr18 5736613 5736751 + 2 NA Intergenic HAL1|LINE|L1 -12137 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 476-15 chr1 200030424 200030782 + 2 NA intron (NM_003822, intron 1 of 6) intron (NM_003822, intron 1 of 6) 2893 NM_205860 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 535-70 chr13 111930611 111931111 + 2 NA Intergenic Intergenic 37365 NR_120401 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 329-102 chr11 111003769 111004019 + 2 NA Intergenic Intergenic 93424 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 234-157 chr2 13516691 13516888 + 2 NA Intergenic Intergenic -509776 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 326-589 chrX 88289854 88290027 + 2 NA Intergenic L1PB1|LINE|L1 -457285 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 256-255 chr3 34743747 34743880 + 2 NA Intergenic Intergenic 650210 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 604-104 chr22 43334399 43334891 + 2 NA intron (NM_173050, intron 2 of 21) (ATC)n|Simple_repeat|Simple_repeat 8727 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 259-331 chr5 156682005 156682191 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -168197 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 181-55 chr17 70131368 70131494 + 2 NA 5' UTR (NM_001291625, exon 4 of 5) 5' UTR (NM_001291625, exon 4 of 5) 26586 NM_001291625 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 297-312 chr4 439677 439895 + 2 NA TTS (NM_133474) TTS (NM_133474) 34423 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 512-271 chr8 87615946 87616336 + 2 NA Intergenic Intergenic 257874 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 185-202 chr8 82471947 82472117 + 2 NA Intergenic L1M7|LINE|L1 -440072 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 372-405 chr5 80948943 80949192 + 2 NA intron (NR_105015, intron 2 of 3) intron (NR_105015, intron 2 of 3) -11296 NM_006909 5924 Hs.162129 NM_006909 ENSG00000113319 RASGRF2 GRF2|RAS-GRF2 Ras protein specific guanine nucleotide releasing factor 2 protein-coding 244-37 chr10 72975662 72975821 + 2 NA Intergenic L1MA5A|LINE|L1 -20935 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 296-453 chr8 5633537 5633816 + 2 NA Intergenic Intergenic -638762 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 475-80 chr14 62944853 62945185 + 2 NA intron (NM_139318, intron 7 of 10) intron (NM_139318, intron 7 of 10) 100439 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 315-336 chr4 54329379 54329659 + 2 NA Intergenic AluJr4|SINE|Alu -3373 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 185-217 chrX 43836784 43836953 + 2 NA intron (NM_000898, intron 3 of 14) intron (NM_000898, intron 3 of 14) 45582 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 234-292 chr4 175409471 175409670 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 378106 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 311-381 chr4 77079219 77079422 + 2 NA Intergenic AluJb|SINE|Alu -3331 NM_006835 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 380-45 chr10 67653625 67653852 + 2 NA intron (NM_001291133, intron 1 of 8) L3|LINE|CR1 11922 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 192-74 chr15 86221460 86221638 + 2 NA intron (NM_152336, intron 5 of 24) intron (NM_152336, intron 5 of 24) 95419 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 487-265 chr7 25243241 25243508 + 2 NA Intergenic Intergenic -14888 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 339-591 chr8 127190754 127191015 + 2 NA intron (NR_120364, intron 1 of 2) intron (NR_120364, intron 1 of 2) 6743 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 132-40 chr2 22596051 22596136 + 2 NA Intergenic L2a|LINE|L2 59614 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 457-111 chr2 35237910 35238243 + 2 NA Intergenic L1PA13|LINE|L1 -233329 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 395-314 chr7 75808103 75808325 + 2 NA Intergenic LTR57|LTR|ERVL 5592 NM_002991 6369 Hs.247838 NM_002991 ENSG00000106178 CCL24 Ckb-6|MPIF-2|MPIF2|SCYA24 C-C motif chemokine ligand 24 protein-coding 564-31 chr11 44437471 44437865 + 2 NA Intergenic AluSz6|SINE|Alu -127529 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 319-170 chr16 9862141 9862376 + 2 NA intron (NM_001134408, intron 4 of 13) intron (NM_001134408, intron 4 of 13) 319809 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 314-166 chr14 47072724 47073030 + 2 NA intron (NM_001113498, intron 6 of 16) L4_A_Mam|LINE|RTE-X 270369 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 359-344 chr3 194050663 194050960 + 2 NA intron (NR_136181, intron 3 of 3) L1MEc|LINE|L1 18718 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 536-61 chr12 83774604 83775067 + 2 NA Intergenic L1MA4|LINE|L1 1087680 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 319-433 chr5 155334813 155335023 + 2 NA Intergenic Intergenic 321163 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 634-83 chr2 154594088 154594459 + 2 NA Intergenic Intergenic -104308 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 294-59 chr11 50524085 50524315 + 2 NA Intergenic ALR/Alpha|Satellite|centr 115053 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 533-8 chr1 181164319 181164685 + 2 NA Intergenic AluJr|SINE|Alu -9982 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 313-313 chr21 24402039 24402206 + 2 NA Intergenic L1MC3|LINE|L1 -26618 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 272-392 chr6 102425095 102425334 + 2 NA Intergenic L1M5|LINE|L1 1026229 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 424-60 chr13 42893915 42894301 + 2 NA intron (NM_001002264, intron 11 of 12) intron (NM_001002264, intron 11 of 12) -21364 NR_126388 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 209-189 chr3 17309581 17309745 + 2 NA intron (NM_014744, intron 13 of 21) intron (NM_014744, intron 13 of 21) 376467 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 350-67 chr11 9101423 9101704 + 2 NA Intergenic MIR|SINE|MIR 7200 NR_027713 283102 Hs.689472 NR_027713 ENSG00000213538 KRT8P41 - keratin 8 pseudogene 41 pseudo 338-139 chr12 119150588 119150849 + 2 NA intron (NM_194286, intron 9 of 12) MER113|DNA|hAT-Charlie 25766 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 244-382 chr9 6581024 6581215 + 2 NA intron (NM_000170, intron 15 of 24) LTR16C|LTR|ERVL 64573 NM_000170 2731 Hs.584238 NM_000170 ENSG00000178445 GLDC GCE|GCSP|HYGN1 glycine decarboxylase protein-coding 215-276 chr6 46256733 46256900 + 2 NA intron (NM_001251973, intron 2 of 4) L4_A_Mam|LINE|RTE-X -19508 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 206-236 chr6 66648481 66648625 + 2 NA Intergenic Intergenic 860674 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 272-158 chr18 4302689 4302953 + 2 NA intron (NM_001242761, intron 1 of 11) L1MA7|LINE|L1 38219 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 354-461 chr8 79131577 79131915 + 2 NA Intergenic AluJo|SINE|Alu -200442 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 443-22 chr1 162086959 162087326 + 2 NA intron (NM_014697, intron 1 of 9) intron (NM_014697, intron 1 of 9) 17451 NM_001164757 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 300-314 chr4 38635471 38635666 + 2 NA intron (NR_026804, intron 2 of 7) intron (NR_026804, intron 2 of 7) -28631 NM_016531 51274 Hs.298658 NM_016531 ENSG00000109787 KLF3 BKLF Kruppel like factor 3 protein-coding 338-365 chr4 5383662 5383875 + 2 NA intron (NM_001306082, intron 5 of 12) intron (NM_001306082, intron 5 of 12) -140801 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 379-314 chr7 34371258 34371590 + 2 NA intron (NR_033665, intron 3 of 3) intron (NR_033665, intron 3 of 3) -286794 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 498-196 chr4 74990930 74991375 + 2 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) -20790 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 375-207 chr2 51465741 51466024 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 433281 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 365-166 chr18 11082970 11083183 + 2 NA intron (NM_022068, intron 1 of 51) intron (NM_022068, intron 1 of 51) 65686 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 194-205 chr8 21802809 21802957 + 2 NA Intergenic Intergenic -14008 NM_001165038 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 505-250 chr5 120374367 120374685 + 2 NA Intergenic Intergenic -89752 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 222-9 chr1 102022778 102022969 + 2 NA Intergenic Intergenic -25639 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 203-118 chr2 111648057 111648241 + 2 NA Intergenic L1MB4|LINE|L1 122985 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 356-189 chr17 11562952 11563248 + 2 NA 3' UTR (NM_001173461, exon 4 of 4) 3' UTR (NM_001173461, exon 4 of 4) -35370 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 279-304 chr4 175673727 175674003 + 2 NA intron (NM_201592, intron 2 of 6) intron (NM_201592, intron 2 of 6) 113811 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 426-148 chr2 162818743 162819164 + 2 NA intron (NM_033272, intron 2 of 15) L1MC4|LINE|L1 19814 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 280-420 chr8 119000537 119000691 + 2 NA intron (NM_001324095, intron 1 of 7) L2|LINE|L2 48351 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 202-96 chr17 69404974 69405144 + 2 NA Intergenic Intergenic -9638 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 498-171 chr3 72073898 72074341 + 2 NA intron (NR_104116, intron 2 of 6) MLT1A|LTR|ERVL-MaLR 26336 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 214-292 chr7 718328 718494 + 2 NA intron (NM_001164759, intron 1 of 10) AluSx|SINE|Alu -5204 NM_001164761 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 223-318 chr7 48684390 48684565 + 2 NA Intergenic Intergenic -240070 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 310-268 chr2 168604489 168604646 + 2 NA intron (NM_001256126, intron 3 of 10) MSTA|LTR|ERVL-MaLR 21624 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 422-14 chr1 115408454 115408869 + 2 NA Intergenic Intergenic -70425 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 381-22 chr1 190175383 190175649 + 2 NA intron (NM_199051, intron 6 of 7) intron (NM_199051, intron 6 of 7) 300494 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 209-186 chr22 49186387 49186542 + 2 NA Intergenic MLT2D|LTR|ERVL 319694 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 448-152 chr3 4858697 4858989 + 2 NA Intergenic L1MB1|LINE|L1 47658 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 248-52 chr10 101618462 101618630 + 2 NA intron (NR_136613, intron 5 of 7) L2b|LINE|L2 -17049 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 549-42 chr12 19720302 19720711 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 279907 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 236-255 chr4 61186104 61186285 + 2 NA Intergenic L1MA6|LINE|L1 -15036 NM_015236 23284 Hs.28391 NM_015236 ENSG00000150471 ADGRL3 CIRL3|CL3|LEC3|LPHN3 adhesion G protein-coupled receptor L3 protein-coding 330-204 chr17 30347498 30347726 + 2 NA Intergenic MER21B|LTR|ERVL -13555 NM_001319942 388364 Hs.371005 NM_206832 ENSG00000182271 TMIGD1 TMIGD|UNQ9372 transmembrane and immunoglobulin domain containing 1 protein-coding 290-275 chr3 43169967 43170207 + 2 NA Intergenic Intergenic -64008 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 340-420 chr4 144267501 144267796 + 2 NA Intergenic Intergenic -126930 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 235-389 chr9 71360779 71360961 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 86101 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 171-21 chr11 92246249 92246393 + 2 NA intron (NM_001367949, intron 1 of 27) L2c|LINE|L2 21287 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 364-310 chr4 103381203 103381466 + 2 NA Intergenic L1M1|LINE|L1 -43708 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 209-52 chr11 8304852 8305009 + 2 NA Intergenic L1MEd|LINE|L1 -36143 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 288-212 chr2 156883772 156883982 + 2 NA Intergenic L2b|LINE|L2 -373828 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 327-8 chr1 68457606 68457907 + 2 NA Intergenic L2a|LINE|L2 -7802 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 315-385 chr5 77244419 77244652 + 2 NA intron (NM_001029853, intron 1 of 20) intron (NM_001029853, intron 1 of 20) 33855 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 198-4 chr1 39976185 39976369 + 2 NA Intergenic Intergenic 21132 NM_001349821 84879 Hs.655177 NM_032793 ENSG00000168389 MFSD2A MCPH15|MFSD2|NLS1 major facilitator superfamily domain containing 2A protein-coding 319-357 chr4 18438625 18438829 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -416852 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 389-267 chr4 98367088 98367314 + 2 NA intron (NM_001100430, intron 4 of 12) THE1B-int|LTR|ERVL-MaLR 105817 NM_001100427 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 303-309 chr4 31974331 31974534 + 2 NA Intergenic MER41B|LTR|ERV1 -22947 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 335-43 chr10 10768248 10768504 + 2 NA intron (NM_001326317, intron 2 of 14) intron (NM_001326317, intron 2 of 14) 26538 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 288-280 chr3 171059092 171059265 + 2 NA 3' UTR (NM_001161562, exon 31 of 31) 3' UTR (NM_001161562, exon 31 of 31) -32458 NM_001278659 6514 Hs.167584 NM_000340 ENSG00000163581 SLC2A2 GLUT2 solute carrier family 2 member 2 protein-coding 501-203 chr5 17350548 17350916 + 2 NA Intergenic Intergenic 36578 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 393-247 chr4 105227798 105228024 + 2 NA intron (NM_001127208, intron 2 of 10) intron (NM_001127208, intron 2 of 10) 81226 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 560-190 chr8 131763968 131764480 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -139869 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 249-274 chr3 146236831 146237024 + 2 NA intron (NM_001128304, intron 2 of 10) L1MB8|LINE|L1 13688 NM_001128305 57088 Hs.477869 NM_020353 ENSG00000114698 PLSCR4 TRA1 phospholipid scramblase 4 protein-coding 287-157 chr16 83723357 83723560 + 2 NA intron (NM_001220489, intron 9 of 12) intron (NM_001220489, intron 9 of 12) 80518 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 168-26 chr14 36111924 36112086 + 2 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 41578 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 209-130 chr18 4042076 4042252 + 2 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 79811 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 179-34 chr17 18235554 18235731 + 2 NA intron (NM_004140, intron 11 of 22) intron (NM_004140, intron 11 of 22) 10007 NM_004140 3996 Hs.513983 NM_004140 ENSG00000131899 LLGL1 DLG4|HUGL|HUGL-1|HUGL1|LLGL|Lgl1|Mgl1 LLGL scribble cell polarity complex component 1 protein-coding 228-68 chr12 44595163 44595372 + 2 NA intron (NM_006159, intron 16 of 20) intron (NM_006159, intron 16 of 20) 280394 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 173-124 chr7 7258645 7258756 + 2 NA intron (NR_108073, intron 1 of 3) intron (NR_108073, intron 1 of 3) 3546 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 428-35 chr11 30438227 30438476 + 2 NA intron (NM_001584, intron 3 of 5) MIRb|SINE|MIR 115247 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 238-403 chr8 138211475 138211705 + 2 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -128045 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 240-376 chr6 65388688 65388896 + 2 NA intron (NM_198283, intron 6 of 9) intron (NM_198283, intron 6 of 9) 87374 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 436-305 chr8 87431381 87431654 + 2 NA Intergenic L1MEg|LINE|L1 442498 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 378-122 chr13 92052587 92052947 + 2 NA intron (NM_004466, intron 6 of 7) intron (NM_004466, intron 6 of 7) 299440 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 323-188 chr17 61627415 61627725 + 2 NA Intergenic L1MB8|LINE|L1 -36351 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 299-197 chr2 39072004 39072206 + 2 NA intron (NM_005633, intron 1 of 22) L2a|LINE|L2 48358 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 284-144 chr16 7306165 7306427 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -26549 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 313-213 chr18 8896451 8896629 + 2 NA Intergenic Intergenic 179159 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 332-384 chr4 96059705 96059923 + 2 NA Intergenic Intergenic 219721 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 286-249 chr20 39188707 39188871 + 2 NA Intergenic L3|LINE|CR1 35959 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 292-7 chr1 48511635 48511847 + 2 NA Intergenic Intergenic -39533 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 562-49 chr12 99563526 99563860 + 2 NA intron (NM_152788, intron 9 of 25) Tigger1|DNA|TcMar-Tigger -84060 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 261-167 chr19 30899874 30900008 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -267569 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 194-213 chr8 115008432 115008589 + 2 NA Intergenic L1M3|LINE|L1 659503 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 321-416 chr4 60002234 60002534 + 2 NA Intergenic Intergenic -920235 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 371-6 chr1 66593199 66593518 + 2 NA intron (NM_001350218, intron 1 of 22) L1MC1|LINE|L1 -35082 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 113-46 chr6 150387712 150387794 + 2 NA intron (NM_001318495, intron 1 of 4) L1ME3B|LINE|L1 18741 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 357-409 chr7 20616906 20617195 + 2 NA intron (NM_001163941, intron 1 of 27) L2a|LINE|L2 1383 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 260-238 chr20 13167310 13167482 + 2 NA 3' UTR (NM_018327, exon 12 of 12) 3' UTR (NM_018327, exon 12 of 12) -53878 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 492-234 chr6 153491058 153491411 + 2 NA Intergenic Intergenic -359952 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 330-113 chr12 19251796 19252051 + 2 NA intron (NM_001256787, intron 1 of 25) intron (NM_001256787, intron 1 of 25) 46598 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 312-62 chr10 117210239 117210521 + 2 NA TTS (NM_181840) TTS (NM_181840) 12891 NM_181840 338567 Hs.449650 NM_181840 ENSG00000186795 KCNK18 K2p18.1|MGR13|TRESK|TRESK-2|TRESK2|TRIK potassium two pore domain channel subfamily K member 18 protein-coding 264-274 chr3 73999394 73999574 + 2 NA Intergenic Intergenic 190240 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 477-234 chr5 46249605 46249944 + 2 NA Intergenic ALR/Alpha|Satellite|centr -553394 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 518-218 chr5 1769216 1769712 + 2 NA Intergenic CpG 30373 NM_032479 64979 Hs.719465 NM_032479 ENSG00000171421 MRPL36 BRIP1|L36mt|MRP-L36|PRPL36|RPMJ mitochondrial ribosomal protein L36 protein-coding 635-5 chr1 102921758 102922138 + 2 NA intron (NM_001854, intron 47 of 66) intron (NM_001854, intron 47 of 66) 186548 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 512-278 chr8 124988351 124988710 + 2 NA Intergenic ERVL-int|LTR|ERVL 9668 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 287-8 chr1 57030829 57031088 + 2 NA intron (NM_001353986, intron 9 of 14) intron (NM_001353986, intron 9 of 14) -64818 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 224-247 chr5 41624671 41624855 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -114162 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 249-339 chr5 108799259 108799431 + 2 NA intron (NM_001308028, intron 3 of 17) intron (NM_001308028, intron 3 of 17) 50397 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 606-127 chr5 4236883 4237294 + 2 NA Intergenic Intergenic -536393 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 262-329 chr4 142491310 142491532 + 2 NA intron (NM_003866, intron 2 of 26) AluSx|SINE|Alu 355114 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 112-24 chr2 23001569 23001638 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -383576 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 321-5 chr1 29439942 29440145 + 2 NA Intergenic Intergenic -89929 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 376-408 chr8 111154448 111154779 + 2 NA intron (NR_125418, intron 1 of 3) L1M5|LINE|L1 81590 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 319-496 chr7 35326512 35326798 + 2 NA intron (NR_038864, intron 1 of 2) intron (NR_038864, intron 1 of 2) 12800 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 208-232 chr6 55271704 55271876 + 2 NA intron (NM_001526, intron 5 of 7) L1MB7|LINE|L1 -55679 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 610-110 chr3 19082309 19082873 + 2 NA Intergenic L1MA3|LINE|L1 -65919 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 197-53 chr13 98666399 98666590 + 2 NA Intergenic Intergenic 86178 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 355-19 chr1 157149001 157149245 + 2 NA Intergenic MIRb|SINE|MIR -10532 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 342-168 chr15 95960538 95960727 + 2 NA Intergenic Intergenic 167209 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 688-87 chr5 10403058 10403588 + 2 NA TTS (NR_162106) TTS (NR_162106) 959 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 326-428 chr5 128097405 128097703 + 2 NA intron (NM_001046, intron 1 of 26) L1M4a1|LINE|L1 13788 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 308-69 chr10 104109836 104110055 + 2 NA Intergenic Intergenic -12113 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 377-266 chr3 28882539 28882847 + 2 NA Intergenic L1ME3A|LINE|L1 307415 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 195-10 chr1 165464712 165464857 + 2 NA Intergenic Intergenic -19429 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 359-401 chr5 91547379 91547654 + 2 NA Intergenic L1MB4|LINE|L1 -164199 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 376-235 chr3 9710330 9710545 + 2 NA intron (NM_001308388, intron 6 of 19) L2a|LINE|L2 6604 NM_001308388 151835 Hs.121335 NM_153635 ENSG00000144550 CPNE9 - copine family member 9 protein-coding 489-45 chr11 93928256 93928571 + 2 NA Intergenic L1PB3|LINE|L1 -77795 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 657-21 chr12 38745086 38745547 + 2 NA intron (NM_153634, intron 10 of 19) intron (NM_153634, intron 10 of 19) 160275 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 355-420 chr5 165703946 165704258 + 2 NA Intergenic Intergenic 1222268 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 244-65 chr12 15222183 15222388 + 2 NA promoter-TSS (NM_001190726) promoter-TSS (NM_001190726) -868 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 337-88 chr11 47085056 47085381 + 2 NA intron (NM_001003677, intron 3 of 8) intron (NM_001003677, intron 3 of 8) 91661 NM_032389 84364 Hs.436204 NM_032389 ENSG00000149182 ARFGAP2 IRZ|NBLA10535|ZFP289|ZNF289 ADP ribosylation factor GTPase activating protein 2 protein-coding 378-117 chr13 61147036 61147389 + 2 NA Intergenic Intergenic 52668 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 252-158 chr17 79643143 79643311 + 2 NA Intergenic L1MEf|LINE|L1 -32176 NM_001350453 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 531-228 chr7 65411948 65412403 + 2 NA Intergenic L1M4|LINE|L1 38320 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 295-319 chr4 12259407 12259560 + 2 NA Intergenic L1PA12|LINE|L1 36032 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 403-231 chr4 153880904 153881119 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -91928 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 328-338 chr3 20657542 20657735 + 2 NA Intergenic L1MEh|LINE|L1 315170 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 391-183 chr2 103499946 103500323 + 2 NA Intergenic Intergenic -515705 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 500-80 chr14 52489064 52489470 + 2 NA intron (NM_001160047, intron 11 of 20) intron (NM_001160047, intron 11 of 20) 63238 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 170 chr1 11240831 11240991 + 2 NA intron (NM_004958, intron 10 of 57) intron (NM_004958, intron 10 of 57) 21640 NM_004958 2475 Hs.338207 NM_004958 ENSG00000198793 MTOR FRAP|FRAP1|FRAP2|RAFT1|RAPT1|SKS mechanistic target of rapamycin kinase protein-coding 345-334 chr22 34918879 34919153 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 78900 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 318-288 chr2 129609258 129609430 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 268147 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 441-115 chr2 16954587 16954992 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -288955 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 332-127 chr12 60276581 60276860 + 2 NA Intergenic Intergenic 587350 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 413-65 chr12 31909324 31909604 + 2 NA Intergenic LTR19A|LTR|ERV1 -22261 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 459-169 chr22 24767404 24767688 + 2 NA intron (NM_001008496, intron 1 of 20) AluSq2|SINE|Alu 3045 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 356-298 chr21 30022125 30022387 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -82204 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 174-7 chr1 170459160 170459285 + 2 NA Intergenic L1MEg|LINE|L1 -72900 NM_152281 92344 Hs.183702 NM_152281 ENSG00000120370 GORAB GO|NTKLBP1|SCYL1BP1 golgin, RAB6 interacting protein-coding 356-114 chr12 99485425 99485659 + 2 NA intron (NM_152788, intron 10 of 25) L1PB3|LINE|L1 -162211 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 755-58 chr6 65989197 65989832 + 2 NA Intergenic L1PBb|LINE|L1 201635 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 391-210 chr20 46213500 46213717 + 2 NA intron (NM_021248, intron 5 of 11) MIRb|SINE|MIR 94890 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 246-138 chr15 97736009 97736217 + 2 NA Intergenic Intergenic 138316 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 328-622 chrUn_KI270538v1 55149 55445 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 552-231 chrX 94353446 94353912 + 2 NA Intergenic L1MD1|LINE|L1 679473 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 341-61 chr10 54301108 54301296 + 2 NA intron (NM_001354411, intron 8 of 34) LTR12_|LTR|ERV1 -185028 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 380-34 chr10 18054740 18054992 + 2 NA Intergenic L1MCa|LINE|L1 -44304 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 773-39 chr5 164417064 164417636 + 2 NA Intergenic L1PA15|LINE|L1 50052 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 316-538 chr8 34246585 34246876 + 2 NA Intergenic L1MEg|LINE|L1 -537191 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 296-350 chr4 163448475 163448689 + 2 NA Intergenic Intergenic 25172 NM_032136 84076 Hs.303923 NM_032136 ENSG00000151005 TKTL2 - transketolase like 2 protein-coding 305-368 chr3 193863786 193863955 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -19861 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 192-27 chr10 81415899 81416057 + 2 NA Intergenic Intergenic -459216 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 152-101 chr9 96642334 96642477 + 2 NA intron (NM_153698, intron 5 of 5) intron (NM_153698, intron 5 of 5) 12912 NM_153698 195827 Hs.44640 NM_153698 ENSG00000158122 PRXL2C AAED1|C9orf21 peroxiredoxin like 2C protein-coding 232-260 chr4 30761470 30761691 + 2 NA intron (NM_032457, intron 1 of 2) MER33|DNA|hAT-Charlie 41211 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 196-112 chr2 14353811 14353950 + 2 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 47078 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 209-16 chr1 170208688 170208813 + 2 NA intron (NR_146891, intron 1 of 4) AluSz|SINE|Alu 34371 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 344-430 chr6 103509946 103510281 + 2 NA Intergenic Intergenic 1349433 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 302-28 chr1 198843863 198844134 + 2 NA intron (NR_040073, intron 2 of 2) intron (NR_040073, intron 2 of 2) 14984 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 353-124 chr12 130543618 130543906 + 2 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 84694 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 205-237 chr6 39344857 39345000 + 2 NA intron (NM_001289020, intron 20 of 21) MLT1J|LTR|ERVL-MaLR -21960 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 219-370 chr8 133816862 133817057 + 2 NA Intergenic Intergenic -39607 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 626-125 chr6 132394452 132394883 + 2 NA intron (NM_015529, intron 1 of 11) L1M2|LINE|L1 6808 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 480-313 chr9 32252555 32252961 + 2 NA Intergenic Intergenic -131845 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 286-202 chr2 51879794 51880006 + 2 NA intron (NR_135237, intron 7 of 10) L1MA2|LINE|L1 -490748 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 309-116 chr12 103700509 103700663 + 2 NA intron (NM_017564, intron 34 of 68) intron (NM_017564, intron 34 of 68) 113313 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 395-318 chr7 109748589 109748860 + 2 NA Intergenic Intergenic 211489 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 358-128 chr14 87623815 87624120 + 2 NA Intergenic L3|LINE|CR1 31327 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 683-89 chr8 92449918 92450486 + 2 NA Intergenic Intergenic 205292 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 353-470 chr6 159538374 159538705 + 2 NA Intergenic Intergenic 154702 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 351-30 chr1 232346204 232346403 + 2 NA Intergenic Intergenic 169305 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 138-57 chr4 76096972 76097094 + 2 NA intron (NM_001130017, intron 3 of 9) intron (NM_001130017, intron 3 of 9) 22338 NM_001179 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 590-20 chr11 10494048 10494437 + 2 NA intron (NM_001025389, intron 7 of 14) L1MB4|LINE|L1 14084 NR_039705 100616263 NR_039705 ENSG00000283813 MIR4485 mir-4485 microRNA 4485 ncRNA 547-129 chr21 30882153 30882483 + 2 NA promoter-TSS (NM_175858) promoter-TSS (NM_175858) -738 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 192-186 chr7 18452977 18453153 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -42645 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 312-389 chr4 109807450 109807608 + 2 NA Intergenic L1MC5|LINE|L1 -5304 NM_000204 3426 Hs.312485 NM_000204 ENSG00000205403 CFI AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF complement factor I protein-coding 275-278 chr4 138712968 138713114 + 2 NA Intergenic Intergenic 299605 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 558-227 chr8 137098787 137099268 + 2 NA Intergenic Intergenic 314561 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 347-39 chr10 8845238 8845470 + 2 NA Intergenic L1MB5|LINE|L1 -52635 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 214-181 chr2 225832805 225832961 + 2 NA Intergenic Intergenic -309911 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 327-155 chr14 69068134 69068341 + 2 NA intron (NM_003861, intron 7 of 8) intron (NM_003861, intron 7 of 8) 84362 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 369-334 chr5 110623825 110624165 + 2 NA intron (NM_001039763, intron 7 of 13) intron (NM_001039763, intron 7 of 13) 102676 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 269-198 chr2 100490732 100490918 + 2 NA Intergenic L1ME3D|LINE|L1 20343 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 370-318 chr3 118092557 118092816 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -401761 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 353-436 chr6 38350640 38350851 + 2 NA intron (NM_052893, intron 7 of 11) intron (NM_052893, intron 7 of 11) -130851 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 348-247 chr2 204364364 204364668 + 2 NA Intergenic Intergenic -180959 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 259-241 chr22 25197475 25197704 + 2 NA TTS (NM_001145206) TTS (NM_001145206) -2269 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 516-263 chr9 14009058 14009422 + 2 NA Intergenic L1MC1|LINE|L1 81269 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 303-29 chr1 248318518 248318800 + 2 NA Intergenic L1PB1|LINE|L1 5909 NM_001004691 391196 Hs.530570 NM_001004691 ENSG00000177186 OR2M7 OR1-58 olfactory receptor family 2 subfamily M member 7 protein-coding 309-249 chr2 69610115 69610326 + 2 NA intron (NM_014911, intron 2 of 21) L1MB3|LINE|L1 33519 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 212-290 chr7 2024148 2024341 + 2 NA intron (NM_001013837, intron 12 of 18) L1MCa|LINE|L1 64808 NR_145797 109623488 NR_145797 SNORA114 - small nucleolar RNA, H/ACA box 114 snoRNA 112-35 chr4 77623395 77623479 + 2 NA Intergenic Intergenic 111684 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 355-415 chr5 125271001 125271245 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -222138 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 600-113 chr7 3135181 3135687 + 2 NA Intergenic Intergenic 23139 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 459-286 chr7 106445801 106446124 + 2 NA Intergenic L1ME1|LINE|L1 -160979 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 379-296 chr6 83261087 83261398 + 2 NA intron (NM_002395, intron 6 of 13) L1PREC2|LINE|L1 -67342 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 439-257 chr7 4544863 4545135 + 2 NA Intergenic L1MB1|LINE|L1 -137296 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 336-342 chr21 30790528 30790721 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 22650 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 507-185 chr4 80623785 80624250 + 2 NA intron (NM_001206997, intron 4 of 6) L1MA8|LINE|L1 288297 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 347-444 chr6 143298868 143299155 + 2 NA intron (NM_016108, intron 4 of 5) intron (NM_016108, intron 4 of 5) 134229 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 229-109 chr14 46831216 46831434 + 2 NA Intergenic L1MD2|LINE|L1 -179544 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 404-347 chr9 113590820 113591139 + 2 NA intron (NM_001282922, intron 3 of 7) MIRb|SINE|MIR -2941 NM_144489 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 343-451 chr5 152717050 152717386 + 2 NA intron (NR_109877, intron 3 of 4) intron (NR_109877, intron 3 of 4) 255131 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 697-83 chrX 78801746 78802260 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 54283 NM_005296 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 405-285 chr6 113294910 113295210 + 2 NA Intergenic L1PA13|LINE|L1 138387 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 335-133 chr12 127854028 127854271 + 2 NA Intergenic L1M3|LINE|L1 -27468 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 241-374 chr7 68331464 68331702 + 2 NA Intergenic AluJo|SINE|Alu 311330 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 439-93 chr14 77078792 77079062 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -2736 NR_110553 102724190 Hs.562528 NR_110553 ENSG00000258819 LINC02289 - long intergenic non-protein coding RNA 2289 ncRNA 272-465 chr8 138551590 138551794 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -53962 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 411-153 chr2 108828147 108828408 + 2 NA intron (NM_001351559, intron 10 of 11) intron (NM_001351559, intron 10 of 11) 41506 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 253-355 chr6 67611052 67611210 + 2 NA Intergenic L1ME3|LINE|L1 -444220 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 331-304 chr2 222317067 222317289 + 2 NA Intergenic Intergenic -1293 NR_136642 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 253-336 chr5 95414947 95415118 + 2 NA intron (NM_152548, intron 4 of 9) L2a|LINE|L2 23666 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 270-28 chr10 18692025 18692245 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 32704 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 243-222 chr2 108259334 108259550 + 2 NA intron (NM_001320878, intron 7 of 7) MER5A|DNA|hAT-Charlie 19474 NM_001008743 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 461-109 chr18 1291382 1291710 + 2 NA intron (NR_023926, intron 2 of 5) L1MB8|LINE|L1 68083 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 261-20 chr1 157791478 157791638 + 2 NA Intergenic L1MA7|LINE|L1 -14426 NR_125358 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 253-211 chr2 216472388 216472580 + 2 NA intron (NM_001127207, intron 14 of 17) L1ME4a|LINE|L1 -26360 NM_000998 6168 Hs.433701 NM_000998 ENSG00000197756 RPL37A L37A ribosomal protein L37a protein-coding 163-7 chr1 168522339 168522471 + 2 NA Intergenic Intergenic 21592 NM_003175 6846 Hs.458346 NM_003175 ENSG00000143185 XCL2 SCM-1b|SCM1B|SCYC2 X-C motif chemokine ligand 2 protein-coding 229-186 chr2 84892963 84893098 + 2 NA Intergenic L1M4b|LINE|L1 -11946 NM_001277053 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 318-593 chrX 94125476 94125706 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 451385 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 244-251 chr4 28978679 28978880 + 2 NA Intergenic Intergenic -18005 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 307-387 chr5 85994682 85994877 + 2 NA Intergenic Intergenic -287665 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 656-111 chr6 121638192 121638549 + 2 NA Intergenic MLT2A1|LTR|ERVL 202724 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 291-324 chr4 92683404 92683631 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 379118 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 457-204 chr5 88173872 88174234 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger 94792 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 494-94 chr17 64114833 64115259 + 2 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 15098 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 320-113 chr12 17867267 17867482 + 2 NA Intergenic Intergenic 194075 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 347-439 chr6 126684869 126685188 + 2 NA Intergenic L1MEc|LINE|L1 200397 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 311-92 chr12 14729033 14729259 + 2 NA Intergenic Intergenic -32547 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 575-91 chr2 126136745 126137124 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -18949 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 269-408 chr8 91720886 91721117 + 2 NA Intergenic Intergenic 296679 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 198-94 chr17 77674644 77674773 + 2 NA Intergenic MIR|SINE|MIR 53851 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 226-328 chr7 104305584 104305798 + 2 NA Intergenic L1MEg|LINE|L1 -22965 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 114-24 chr18 8055603 8055688 + 2 NA intron (NM_002845, intron 7 of 30) L1ME3F|LINE|L1 311389 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 164-96 chr5 38805300 38805386 + 2 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 40486 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 255-264 chr3 91552893 91553112 + 2 NA Intergenic ALR/Alpha|Satellite|centr 2421079 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 318-472 chr6 37601709 37601872 + 2 NA Intergenic Intergenic -46368 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 337-600 chrX 66862269 66862455 + 2 NA Intergenic Intergenic -223064 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 144-2 chr1 59177069 59177181 + 2 NA Intergenic L1MB3|LINE|L1 -30318 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 227-75 chr11 116781492 116781712 + 2 NA intron (NM_003904, intron 12 of 13) HAL1|LINE|L1 6421 NM_003904 8882 Hs.7165 NM_003904 ENSG00000109917 ZPR1 ZNF259 ZPR1 zinc finger protein-coding 261-205 chr2 208090440 208090617 + 2 NA Intergenic MLT2B1|LTR|ERVL -28601 NR_038437 100507443 Hs.570295 NR_038437 LOC100507443 - uncharacterized LOC100507443 ncRNA 423-106 chr18 7355644 7355939 + 2 NA Intergenic Intergenic 105215 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 337-280 chr2 164437346 164437605 + 2 NA Intergenic Intergenic 131020 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 231-128 chr17 58141445 58141609 + 2 NA Intergenic L1M5|LINE|L1 -13627 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 337-461 chr5 129308171 129308425 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 88849 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 206-126 chr2 121011556 121011683 + 2 NA Intergenic L1MB5|LINE|L1 219338 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 276-337 chr4 69830311 69830570 + 2 NA Intergenic HERV3-int|LTR|ERV1 29705 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 382-442 chrX 34040452 34040737 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 91736 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 185-209 chr9 15221811 15221966 + 2 NA intron (NM_001168342, intron 1 of 17) intron (NM_001168342, intron 1 of 17) 28330 NM_001168342 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 451-29 chr10 69977554 69977889 + 2 NA Intergenic L1MB7|LINE|L1 -75125 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 349-222 chr19 9375306 9375653 + 2 NA promoter-TSS (NM_001172651) promoter-TSS (NM_001172651) -837 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 289-380 chr5 108823967 108824157 + 2 NA intron (NM_001308028, intron 3 of 17) L1MA9|LINE|L1 75114 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 759-40 chr2 129204370 129204947 + 2 NA Intergenic Intergenic 69233 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 514-87 chr14 62808101 62808448 + 2 NA intron (NM_139318, intron 8 of 10) PABL_A-int|LTR|ERV1 237184 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 234-388 chr8 86923104 86923307 + 2 NA intron (NM_173538, intron 3 of 10) MER51C|LTR|ERV1 56790 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 403-118 chr15 97453680 97453966 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 67988 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 524-74 chr15 97163925 97164238 + 2 NA Intergenic LTR50|LTR|ERVL 357730 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 527-160 chr21 34177607 34177980 + 2 NA Intergenic Intergenic -2884 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 339-606 chr9 33801718 33801962 + 2 NA Intergenic Intergenic 6279 NM_002771 5646 Hs.654513 NM_002771 ENSG00000010438 PRSS3 MTG|PRSS4|T9|TRY3|TRY4 serine protease 3 protein-coding 384-200 chr20 9134463 9134694 + 2 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) 65524 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 336-22 chr1 69112277 69112576 + 2 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 56528 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 234-299 chr5 12825339 12825504 + 2 NA Intergenic L1PB4|LINE|L1 157562 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 224-84 chr14 49382169 49382376 + 2 NA Intergenic Intergenic 204108 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 401-216 chr3 135874237 135874460 + 2 NA Intergenic L1MB1|LINE|L1 -91380 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 250-334 chr5 19681238 19681430 + 2 NA intron (NM_001349562, intron 5 of 13) L1PA15|LINE|L1 204938 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 249-74 chr11 41325146 41325357 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 134385 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 329-300 chr2 182620286 182620520 + 2 NA Intergenic Intergenic -95854 NR_073365 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 450-234 chr5 12785526 12785927 + 2 NA intron (NR_033383, intron 3 of 3) L1M5|LINE|L1 117867 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 515-92 chr18 2988547 2988858 + 2 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 23245 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 550-129 chr20 6845378 6845770 + 2 NA Intergenic Intergenic 77888 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 336-401 chr4 41085989 41086205 + 2 NA intron (NM_173075, intron 3 of 16) L1M3|LINE|L1 128445 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 286-447 chr8 65497235 65497401 + 2 NA Intergenic Intergenic 65348 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 545-68 chr14 40936480 40936894 + 2 NA Intergenic Intergenic -18024 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 280-123 chr14 66165326 66165524 + 2 NA Intergenic L1ME3A|LINE|L1 -320946 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 145-77 chr7 51620683 51620794 + 2 NA Intergenic Intergenic -227482 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 306-472 chr7 57927626 57927837 + 2 NA Intergenic ALR/Alpha|Satellite|centr 477554 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 379-26 chr1 194050421 194050773 + 2 NA Intergenic L1ME2z|LINE|L1 745852 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 365-346 chr6 47369849 47370063 + 2 NA Intergenic L1MA8|LINE|L1 -60051 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 270-131 chr15 95247845 95248100 + 2 NA Intergenic Intergenic 79128 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 253-282 chr3 190755757 190755951 + 2 NA Intergenic Intergenic 106840 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 244-380 chr8 131683623 131683853 + 2 NA Intergenic Intergenic -220355 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 438-282 chr8 126104043 126104373 + 2 NA Intergenic Intergenic -153011 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 623-110 chr5 117408561 117409181 + 2 NA Intergenic L1PA13|LINE|L1 -6641 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 261-417 chrX 45363947 45364169 + 2 NA Intergenic L1ME4a|LINE|L1 -141330 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 365-5 chr1 60100358 60100592 + 2 NA Intergenic L1ME3A|LINE|L1 -26705 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 391-244 chr3 157742508 157742812 + 2 NA Intergenic L1PB1|LINE|L1 199316 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 263-208 chr2 106951826 106952035 + 2 NA Intergenic AluY|SINE|Alu -64821 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 506-281 chr8 83252939 83253304 + 2 NA Intergenic L1M4|LINE|L1 -150637 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 361-300 chr3 121971700 121971910 + 2 NA Intergenic L1M1|LINE|L1 50442 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 126-12 chr11 56468481 56468549 + 2 NA TTS (NM_001004742) TTS (NM_001004742) 2023 NM_001004742 219482 Hs.553631 NM_001004742 ENSG00000174937 OR5M3 OR11-191 olfactory receptor family 5 subfamily M member 3 protein-coding 298-230 chr2 137482478 137482700 + 2 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 445343 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 300-166 chr18 60889862 60890054 + 2 NA Intergenic Intergenic -443472 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 520-184 chr3 40074505 40074941 + 2 NA intron (NM_001284425, intron 3 of 15) L1MC|LINE|L1 -25288 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 589-150 chr7 52317422 52317845 + 2 NA Intergenic Intergenic -718000 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 528-56 chr12 14573488 14573793 + 2 NA intron (NR_120465, intron 2 of 5) intron (NR_120465, intron 2 of 5) -5757 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 419-91 chr14 59627856 59628226 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) 2773 NM_206852 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 659-5 chr1 236359561 236360171 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -34420 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 829-34 chr5 110826662 110827403 + 2 NA Intergenic MER41-int|LTR|ERV1 88025 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 344-391 chr5 92829604 92829825 + 2 NA Intergenic L1PA10|LINE|L1 741629 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 201-53 chr11 131309604 131309752 + 2 NA Intergenic Intergenic -60937 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 216-113 chr15 70820066 70820276 + 2 NA Intergenic L1ME1|LINE|L1 -33068 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 349-90 chr10 128318983 128319247 + 2 NA Intergenic Intergenic 33165 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 309-172 chr15 46134429 46134713 + 2 NA Intergenic L1M3c|LINE|L1 429376 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 365-217 chr2 193009792 193010090 + 2 NA Intergenic Intergenic 260096 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 145-13 chr10 59403740 59403837 + 2 NA Intergenic L1MC5a|LINE|L1 -40607 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 216-171 chr2 95198945 95199157 + 2 NA Intergenic Intergenic 33242 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 520-17 chr1 171008549 171009051 + 2 NA intron (NM_001163629, intron 15 of 21) L1MC4|LINE|L1 73266 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 293-243 chr22 27723623 27723821 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 78034 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 542-99 chr2 79018729 79019102 + 2 NA Intergenic MIRc|SINE|MIR -6787 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 355-252 chr2 123444090 123444384 + 2 NA Intergenic Intergenic -370756 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 228-202 chr21 34327744 34327918 + 2 NA Intergenic Intergenic -36193 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 338-361 chr3 190560237 190560545 + 2 NA intron (NR_157352, intron 2 of 10) intron (NR_157352, intron 2 of 10) 46306 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 352-137 chr14 42844847 42845089 + 2 NA Intergenic L1MA1|LINE|L1 1238112 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 199-145 chr20 55312481 55312598 + 2 NA Intergenic L1M3|LINE|L1 -110504 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 649-44 chr2 16211181 16211749 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 161038 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 273-154 chr16 35248094 35248328 + 2 NA Intergenic Intergenic 52452 NR_157262 112268173 Hs.369226 NR_157261 LOC112268173 - uncharacterized LOC112268173 ncRNA 331-511 chr7 122923799 122924011 + 2 NA Intergenic Intergenic -37146 NM_001009571 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 156-2 chr1 88603122 88603241 + 2 NA intron (NR_110682, intron 1 of 3) intron (NR_110682, intron 1 of 3) -80963 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 329-189 chr15 60956878 60957108 + 2 NA intron (NM_134261, intron 1 of 10) MIRc|SINE|MIR 272309 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 461-245 chr7 26916627 26916936 + 2 NA Intergenic Intergenic -52191 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 543-206 chr5 118704977 118705470 + 2 NA Intergenic Intergenic 109035 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 401-10 chr1 115091352 115091697 + 2 NA Intergenic Intergenic -2021 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 366-371 chr6 40516806 40517064 + 2 NA intron (NM_020737, intron 1 of 2) L2a|LINE|L2 70429 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 392-211 chr3 132148129 132148373 + 2 NA Intergenic Intergenic -108645 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 954-19 chr19 23362799 23363442 + 2 NA intron (NM_001300951, intron 2 of 2) intron (NM_001300951, intron 2 of 2) 32351 NM_001300951 7644 Hs.58834 NM_003430 ENSG00000167232 ZNF91 HPF7|HTF10 zinc finger protein 91 protein-coding 280-164 chr17 73665971 73666127 + 2 NA Intergenic Intergenic -21604 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 208-224 chr5 175217318 175217458 + 2 NA Intergenic AluSx1|SINE|Alu -221657 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 412-28 chr10 49118860 49119144 + 2 NA Intergenic Intergenic -2837 NR_038973 100506733 Hs.404175 NR_038973 ENSG00000234736 FAM170B-AS1 - FAM170B antisense RNA 1 ncRNA 262-216 chr2 114158896 114159067 + 2 NA Intergenic AluSx1|SINE|Alu -178997 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 265-51 chr10 128085036 128085235 + 2 NA 3' UTR (NM_001323355, exon 20 of 20) 3' UTR (NM_001323355, exon 20 of 20) -22710 NR_136149 105378553 NR_136149 AS-PTPRE - lncRNA antisense to PTPRE protein-coding gene ncRNA 358-380 chr5 105778033 105778350 + 2 NA Intergenic L1M4|LINE|L1 678717 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 230-95 chr13 33975305 33975433 + 2 NA Intergenic L1MC3|LINE|L1 157220 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 345-199 chr17 32982329 32982505 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -9430 NM_001317226 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 431-184 chr3 111252337 111252672 + 2 NA Intergenic MIRb|SINE|MIR 180688 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 493-165 chr2 138690121 138690538 + 2 NA intron (NM_007226, intron 1 of 1) L2|LINE|L2 90061 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 473-121 chr19 57109257 57109633 + 2 NA Intergenic Intergenic -10696 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 339-452 chr5 82525008 82525311 + 2 NA Intergenic Intergenic 245697 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 187-172 chr8 80974571 80974695 + 2 NA 3' UTR (NM_018440, exon 9 of 9) 3' UTR (NM_018440, exon 9 of 9) -99852 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 184-123 chr4 51920337 51920494 + 2 NA Intergenic L1MD3|LINE|L1 76836 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 351-506 chr8 138262132 138262345 + 2 NA intron (NM_015912, intron 4 of 19) intron (NM_015912, intron 4 of 19) -178693 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 223-208 chr3 60550543 60550745 + 2 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) 67226 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 619-104 chr5 139808645 139809253 + 2 NA intron (NM_032289, intron 1 of 14) intron (NM_032289, intron 1 of 14) 13141 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 405-172 chr2 214292174 214292453 + 2 NA intron (NR_047660, intron 14 of 14) L1MA4A|LINE|L1 -118741 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 294-169 chr17 71911474 71911724 + 2 NA Intergenic Intergenic 114380 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 270-24 chr1 241283183 241283415 + 2 NA intron (NM_001282778, intron 2 of 16) L1MD1|LINE|L1 72527 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 304-41 chr10 18184288 18184574 + 2 NA intron (NM_201593, intron 2 of 13) L1MC3|LINE|L1 44007 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 556-85 chr17 79053468 79054009 + 2 NA Intergenic Intergenic 19439 NM_198593 114897 Hs.201398 NM_030968 ENSG00000173918 C1QTNF1 CTRP1|GIP|ZSIG37 C1q and TNF related 1 protein-coding 213-292 chr8 136008052 136008198 + 2 NA Intergenic L1MA9|LINE|L1 -522673 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 619-129 chr8 129688070 129688560 + 2 NA Intergenic Intergenic -8076 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 741-40 chr3 73719037 73719575 + 2 NA Intergenic Intergenic -89938 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 258-416 chr8 142389009 142389195 + 2 NA intron (NM_001366903, intron 1 of 9) L1M2|LINE|L1 14080 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 313-359 chr3 118731917 118732083 + 2 NA intron (NR_135547, intron 1 of 3) MamRep434|DNA|TcMar-Tigger 78833 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 550-234 chr8 117186104 117186493 + 2 NA Intergenic Intergenic 51303 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 381-206 chr2 134570771 134571022 + 2 NA intron (NM_030923, intron 2 of 7) MLT1K|LTR|ERVL-MaLR 148104 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 250-372 chr6 61922630 61922779 + 2 NA intron (NR_146874, intron 4 of 13) L1MEc|LINE|L1 348574 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 330-66 chr10 86274866 86275043 + 2 NA intron (NM_017551, intron 2 of 15) L1PA3|LINE|L1 -10166 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 751-24 chr17 54900068 54900481 + 2 NA promoter-TSS (NM_005486) promoter-TSS (NM_005486) -417 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 356-424 chr6 63882147 63882489 + 2 NA intron (NM_001292009, intron 35 of 43) intron (NM_001292009, intron 35 of 43) 75482 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 124-61 chr5 56947110 56947198 + 2 NA intron (NM_001297598, intron 2 of 12) intron (NM_001297598, intron 2 of 12) 4976 NM_001297599 166968 Hs.657594 NM_152622 ENSG00000155545 MIER3 - MIER family member 3 protein-coding 484-93 chr17 51056357 51056677 + 2 NA intron (NM_001130527, intron 2 of 29) intron (NM_001130527, intron 2 of 29) -9639 NM_001251971 9043 Hs.463439 NM_003971 ENSG00000008294 SPAG9 CT89|HLC-6|HLC4|HLC6|JIP-4|JIP4|JLP|PHET|PIG6 sperm associated antigen 9 protein-coding 524-68 chr14 87700841 87701230 + 2 NA Intergenic Intergenic -45741 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 620-56 chr19 31408759 31409189 + 2 NA Intergenic Intergenic -59538 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 403-288 chr7 91525538 91525817 + 2 NA Intergenic L1MA9|LINE|L1 261244 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 177-148 chr7 24469869 24470012 + 2 NA Intergenic L1MD1|LINE|L1 -103512 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 393-120 chr16 68381752 68382091 + 2 NA intron (NM_018667, intron 2 of 8) intron (NM_018667, intron 2 of 8) 66587 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 310-94 chr11 132922818 132923014 + 2 NA intron (NM_001319104, intron 1 of 6) AluJr|SINE|Alu 20721 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 576-140 chr5 114091780 114092095 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -270133 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 209-30 chr10 12869783 12869958 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 131843 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 509-22 chr10 43555472 43555819 + 2 NA TTS (NM_001099284) TTS (NM_001099284) 12814 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 315-258 chr2 133786415 133786636 + 2 NA Intergenic Intergenic -218062 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 246-99 chr12 88694156 88694337 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -113773 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 433-276 chr8 75762617 75762926 + 2 NA Intergenic L1M5|LINE|L1 222803 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 327-528 chr9 100674215 100674472 + 2 NA Intergenic Intergenic 96264 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 288-42 chr10 30734606 30734799 + 2 NA Intergenic MIRb|SINE|MIR 11483 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 128-29 chr2 49105106 49105228 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 45564 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 374-413 chr9 70998736 70999036 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 122735 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 293-32 chr10 38509486 38509712 + 2 NA Intergenic Intergenic 81453 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 171-24 chr12 26425995 26426129 + 2 NA intron (NM_002223, intron 49 of 56) L2c|LINE|L2 230489 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 272-310 chr4 73788703 73788919 + 2 NA Intergenic Intergenic -47867 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 368-485 chr9 85375472 85375662 + 2 NA Intergenic HERVL-int|LTR|ERVL 366462 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 551-210 chr8 64934101 64934574 + 2 NA Intergenic L1MB8|LINE|L1 -135600 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 318-496 chr6 156771706 156771885 + 2 NA Intergenic MamRep4096|DNA|hAT-Tip100 -6060 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 443-121 chr17 58095916 58096142 + 2 NA TTS (NM_080677) TTS (NM_080677) 12610 NM_080677 140735 Hs.720595 NM_080677 ENSG00000264364 DYNLL2 DNCL1B|Dlc2|RSPH22 dynein light chain LC8-type 2 protein-coding 205-281 chr8 114982781 114982945 + 2 NA Intergenic L1MC3|LINE|L1 685150 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 355-323 chr3 72589774 72590088 + 2 NA Intergenic MIRb|SINE|MIR 74318 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 483-154 chr22 31260443 31260875 + 2 NA intron (NM_001031801, intron 4 of 14) L2a|LINE|L2 12275 NM_001031801 3985 Hs.474596 NM_005569 ENSG00000182541 LIMK2 - LIM domain kinase 2 protein-coding 228-227 chr3 174810311 174810475 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -48941 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 562-159 chr4 58513640 58514044 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 22486 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 189-147 chr4 64902884 64903026 + 2 NA Intergenic Intergenic 101545 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 288-127 chr15 24644015 24644259 + 2 NA Intergenic L1M1|LINE|L1 -31257 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 333-240 chr2 66023152 66023336 + 2 NA Intergenic Intergenic 335084 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 314-469 chr5 96005531 96005781 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 43655 NR_130776 101929710 NR_130776 ENSG00000251314 LOC101929710 - uncharacterized LOC101929710 ncRNA 303-166 chr17 10203910 10204132 + 2 NA Intergenic L1MB7|LINE|L1 -5415 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 579-159 chr7 145975683 145976157 + 2 NA Intergenic Intergenic -798351 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 814-9 chr11 31125082 31125665 + 2 NA intron (NM_001367979, intron 11 of 38) L1PA10|LINE|L1 -132687 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 220-335 chr7 9832882 9833014 + 2 NA Intergenic Intergenic 198678 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 272-459 chr8 122074012 122074168 + 2 NA Intergenic Intergenic -432650 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 571-166 chr8 48251941 48252418 + 2 NA Intergenic L1PBa|LINE|L1 243748 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 225-150 chr2 49439342 49439513 + 2 NA Intergenic L1MC5a|LINE|L1 -284900 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 426-315 chr9 96432140 96432392 + 2 NA Intergenic AluSz|SINE|Alu -13896 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 298-38 chr10 26053024 26053267 + 2 NA intron (NM_017433, intron 10 of 34) intron (NM_017433, intron 10 of 34) 118916 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 351-235 chr2 128461623 128461844 + 2 NA Intergenic L1M4|LINE|L1 -142865 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 343-481 chr6 120970517 120970748 + 2 NA Intergenic L1MA7|LINE|L1 363848 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 333-7 chr1 38154131 38154350 + 2 NA Intergenic L2c|LINE|L2 60527 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 356-341 chr3 181516049 181516313 + 2 NA intron (NR_075091, intron 3 of 7) L1PA16|LINE|L1 -73695 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 250-25 chr1 186539382 186539624 + 2 NA Intergenic LTR75_1|LTR|ERV1 -78389 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 529-155 chr4 36745653 36746006 + 2 NA Intergenic L1MC|LINE|L1 -103929 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 166-20 chr13 37612454 37612577 + 2 NA Intergenic Intergenic -13671 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 279-169 chr2 41161754 41161977 + 2 NA Intergenic Intergenic -649430 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 319-228 chr2 14127110 14127306 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 273750 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 408-286 chr6 598978 599266 + 2 NA non-coding (NR_073064, exon 10 of 30) non-coding (NR_073064, exon 10 of 30) 57842 NM_148959 135458 Hs.669039 NM_148959 ENSG00000188996 HUS1B - HUS1 checkpoint clamp component B protein-coding 167-71 chr20 31299942 31300103 + 2 NA Intergenic Intergenic 8563 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 343-18 chr1 93796641 93796869 + 2 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) -21372 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 393-4 chr1 25666589 25666835 + 2 NA intron (NM_020379, intron 1 of 11) intron (NM_020379, intron 1 of 11) 49244 NM_020379 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 165-27 chr13 110852381 110852534 + 2 NA Intergenic L1MD|LINE|L1 17851 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 277-34 chr1 239932210 239932413 + 2 NA Intergenic L2a|LINE|L2 -32439 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 236-276 chr5 9380381 9380578 + 2 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -130854 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 358-249 chr2 220114956 220115167 + 2 NA Intergenic MIRb|SINE|MIR -208496 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 229-247 chr3 34527176 34527322 + 2 NA Intergenic Intergenic 728619 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 353-542 chr8 137225644 137225895 + 2 NA Intergenic Intergenic 187819 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 248-255 chr3 133561139 133561307 + 2 NA Intergenic MIRb|SINE|MIR -12463 NM_001282762 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 483-151 chr21 31943217 31943502 + 2 NA intron (NM_014586, intron 3 of 10) UCON107|DNA|hAT-Tag1 70339 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 355-126 chr12 29816544 29816865 + 2 NA Intergenic Intergenic -31945 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 297-177 chr17 78468254 78468409 + 2 NA intron (NM_173628, intron 55 of 80) MER2|DNA|TcMar-Tigger -16579 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 312-49 chr10 62500963 62501204 + 2 NA intron (NM_199451, intron 4 of 7) L2b|LINE|L2 -19365 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 620-61 chr2 18024695 18025099 + 2 NA Intergenic L1PA16|LINE|L1 146230 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 229-191 chr2 114174940 114175120 + 2 NA Intergenic L2b|LINE|L2 -195046 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 432-114 chr2 7583851 7584214 + 2 NA Intergenic Intergenic 162771 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 555-88 chr2 34561920 34562388 + 2 NA Intergenic MIRc|SINE|MIR -115403 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 420-195 chr3 185260816 185261088 + 2 NA Intergenic MER51-int|LTR|ERV1 -6903 NM_001966 1962 Hs.429879 NM_001966 ENSG00000113790 EHHADH ECHD|FRTS3|L-PBE|LBFP|LBP|PBFE enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase protein-coding 380-280 chr4 91546648 91546941 + 2 NA intron (NM_001145065, intron 10 of 10) L1MC1|LINE|L1 730508 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 447-263 chr8 77070645 77070990 + 2 NA Intergenic L1MB7|LINE|L1 -69773 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 224-70 chr12 127780590 127780742 + 2 NA Intergenic L1MC2|LINE|L1 -100951 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 269-259 chr3 184643563 184643730 + 2 NA Intergenic Intergenic 68418 NM_022149 64110 Hs.306123 NM_022149 ENSG00000177383 MAGEF1 MAGE-F1 MAGE family member F1 protein-coding 249-35 chr10 11268766 11268953 + 2 NA intron (NM_001025076, intron 6 of 13) intron (NM_001025076, intron 6 of 13) 75815 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 336-255 chr2 14838926 14839242 + 2 NA Intergenic L1M3f|LINE|L1 206367 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 198-44 chr11 112999781 112999905 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -36383 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 318-498 chr6 163970762 163971014 + 2 NA Intergenic Intergenic -299404 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 255-337 chr5 115476912 115477135 + 2 NA Intergenic L3|LINE|CR1 67752 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 235-51 chr10 99756608 99756742 + 2 NA TTS (NM_015960) TTS (NM_015960) -24009 NM_001320974 1355 Hs.28326 NM_004376 ENSG00000014919 COX15 CEMCOX2 cytochrome c oxidase assembly homolog COX15 protein-coding 336-527 chr7 102970147 102970469 + 2 NA intron (NR_105043, intron 7 of 20) intron (NR_105043, intron 7 of 20) -3122 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 335-454 chr6 15937686 15938000 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -191243 NM_013262 29116 Hs.484738 NM_013262 ENSG00000007944 MYLIP IDOL|MIR myosin regulatory light chain interacting protein protein-coding 484-229 chr5 147236510 147236817 + 2 NA intron (NM_001112724, intron 1 of 12) intron (NM_001112724, intron 1 of 12) 1637 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 287-245 chr3 41428310 41428464 + 2 NA intron (NR_136342, intron 32 of 34) L1PA10|LINE|L1 228882 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 342-353 chr4 32781640 32781849 + 2 NA Intergenic Intergenic 430706 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 283-263 chr20 39468948 39469112 + 2 NA Intergenic Intergenic -244282 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 702-35 chr17 78273392 78273928 + 2 NA intron (NR_073178, intron 1 of 6) AluSz|SINE|Alu 4832 NR_073178 100996291 Hs.744493 NR_073178 ENSG00000204277 LINC01993 - long intergenic non-protein coding RNA 1993 ncRNA 573-119 chr3 102560090 102560574 + 2 NA Intergenic L1M3de|LINE|L1 125317 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 484-192 chr4 94184785 94185113 + 2 NA intron (NR_125922, intron 1 of 8) intron (NR_125922, intron 1 of 8) 22607 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 323-171 chr15 101412226 101412437 + 2 NA intron (NM_138325, intron 6 of 13) L1MDa|LINE|L1 77376 NM_002570 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 297-86 chr11 102849329 102849543 + 2 NA Intergenic Intergenic -5827 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 302-456 chr8 93034139 93034422 + 2 NA Intergenic L1ME1|LINE|L1 4529 NR_107051 102467005 NR_107051 ENSG00000277063 MIR8084 hsa-mir-8084 microRNA 8084 ncRNA 271-389 chr6 130302215 130302371 + 2 NA intron (NM_001258275, intron 2 of 13) L1PA17|LINE|L1 63575 NM_001258275 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 420-205 chr4 91896972 91897323 + 2 NA Intergenic Intergenic 380155 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 220-57 chr10 98777313 98777483 + 2 NA intron (NM_021828, intron 3 of 11) MIRb|SINE|MIR 147170 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 308-133 chr14 25345515 25345814 + 2 NA Intergenic Intergenic -295367 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 185-91 chr2 51458475 51458629 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 425951 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 522-147 chr2 185776646 185777028 + 2 NA intron (NM_173651, intron 13 of 22) AluSx|SINE|Alu 23313 NR_144453 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 205-73 chr13 76759134 76759267 + 2 NA Intergenic Intergenic 127205 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 273-253 chr20 5401919 5402138 + 2 NA Intergenic Intergenic 43720 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 237-179 chr2 76333025 76333247 + 2 NA Intergenic Intergenic -622221 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 403-171 chr2 213361077 213361365 + 2 NA intron (NR_047660, intron 6 of 14) intron (NR_047660, intron 6 of 14) 76757 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 225-380 chr9 4527689 4527897 + 2 NA intron (NM_004170, intron 1 of 11) intron (NM_004170, intron 1 of 11) 37325 NM_004170 6505 Hs.444915 NM_004170 ENSG00000106688 SLC1A1 DCBXA|EAAC1|EAAT3|SCZD18 solute carrier family 1 member 1 protein-coding 332-525 chr8 79122516 79122800 + 2 NA Intergenic HERVIP10B3-int|LTR|ERV1 -209530 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 150-48 chr2 40423139 40423255 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 7107 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 242-132 chr16 76279262 76279450 + 2 NA intron (NR_136213, intron 1 of 23) intron (NR_136213, intron 1 of 23) 1955 NM_001322191 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 248-364 chr7 8933210 8933402 + 2 NA Intergenic Intergenic 499697 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 234-63 chr11 94070555 94070761 + 2 NA intron (NM_001098672, intron 6 of 19) intron (NM_001098672, intron 6 of 19) 49304 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 556-192 chr6 55428433 55428906 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner 101200 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 317-538 chr9 114852802 114852973 + 2 NA Intergenic AluY|SINE|Alu -46848 NM_005118 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 401-141 chr19 9504423 9504656 + 2 NA Intergenic L1M4|LINE|L1 -5923 NM_001351678 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 295-489 chr9 20255512 20255798 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 155583 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 477-215 chr3 189406672 189407030 + 2 NA Intergenic AluJr|SINE|Alu -166257 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 326-83 chr10 111881126 111881323 + 2 NA Intergenic Intergenic 302541 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 326-54 chr10 8167033 8167322 + 2 NA Intergenic L1MEd|LINE|L1 101128 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 330-258 chr2 50027158 50027351 + 2 NA intron (NM_001330093, intron 21 of 22) (TTCC)n|Simple_repeat|Simple_repeat -53051 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 144-19 chr11 128275521 128275637 + 2 NA Intergenic L1M5|LINE|L1 66813 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 402-299 chr6 81200835 81201095 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 551716 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 265-104 chr14 60044149 60044402 + 2 NA intron (NR_075071, intron 29 of 32) L1M2|LINE|L1 -47636 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 415-313 chrX 73347621 73347947 + 2 NA Intergenic L1PA15|LINE|L1 -99470 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 380-191 chr2 117386757 117387102 + 2 NA Intergenic AluSz|SINE|Alu -427762 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 224-269 chr5 174052062 174052261 + 2 NA intron (NM_015980, intron 2 of 4) intron (NM_015980, intron 2 of 4) 6455 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 332-510 chr8 22955920 22956114 + 2 NA Intergenic Intergenic -14940 NM_001363233 157310 Hs.491242 NM_144962 ENSG00000134020 PEBP4 CORK-1|CORK1|GWTM1933|HEL-S-300|PEBP-4|PRO4408|hPEBP4 phosphatidylethanolamine binding protein 4 protein-coding 370-159 chr15 60718678 60719023 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 37281 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 327-228 chr19 53209261 53209437 + 2 NA Intergenic L1PA7|LINE|L1 -3599 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 355-332 chr3 102244637 102244954 + 2 NA Intergenic Intergenic 81090 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 399-155 chr2 106314803 106315064 + 2 NA Intergenic Intergenic -54812 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 436-221 chr4 126532679 126532975 + 2 NA Intergenic Intergenic 1025568 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 522-63 chr12 47052883 47053267 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -26528 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 389-350 chr7 92902747 92903013 + 2 NA intron (NR_110087, intron 2 of 2) L1ME3B|LINE|L1 -66253 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 201-187 chr5 20248745 20248912 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -56723 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 237-103 chr14 55154031 55154244 + 2 NA intron (NM_001146015, intron 15 of 19) intron (NM_001146015, intron 15 of 19) 17154 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 438-118 chr2 58208474 58208877 + 2 NA intron (NR_156742, intron 1 of 9) intron (NR_156742, intron 1 of 9) 32705 NM_018062 55120 Hs.631890 NM_018062 ENSG00000115392 FANCL FAAP43|PHF9|POG FA complementation group L protein-coding 292-133 chr14 38956041 38956301 + 2 NA Intergenic L2b|LINE|L2 -39289 NR_039982 283547 Hs.675941 NR_039982 ENSG00000259070 LINC00639 - long intergenic non-protein coding RNA 639 ncRNA 309-17 chr1 164267772 164267995 + 2 NA Intergenic Intergenic -291477 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 341-562 chr9 72246424 72246676 + 2 NA intron (NM_001351573, intron 12 of 14) MER39|LTR|ERV1 -58886 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 285-345 chr5 93412500 93412690 + 2 NA intron (NR_109822, intron 2 of 2) intron (NR_109822, intron 2 of 2) 158748 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 214-198 chr22 39523012 39523168 + 2 NA TTS (NM_001675) TTS (NM_001675) 2526 NM_182810 468 Hs.496487 NM_001675 ENSG00000128272 ATF4 CREB-2|CREB2|TAXREB67|TXREB activating transcription factor 4 protein-coding 410-219 chr4 79411210 79411500 + 2 NA Intergenic Intergenic -3127 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 326-511 chr7 114114550 114114760 + 2 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 28328 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 433-144 chr2 170551626 170551991 + 2 NA intron (NM_001083615, intron 31 of 33) MSTA|LTR|ERVL-MaLR 162759 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 364-337 chr5 30929677 30929999 + 2 NA Intergenic MER53|DNA|hAT -263848 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 451-132 chr20 48964619 48964933 + 2 NA intron (NM_006420, intron 7 of 38) intron (NM_006420, intron 7 of 38) 43065 NM_006420 10564 Hs.62578 NM_006420 ENSG00000124198 ARFGEF2 BIG2|PVNH2|dJ1164I10.1 ADP ribosylation factor guanine nucleotide exchange factor 2 protein-coding 399-153 chr2 99231911 99232162 + 2 NA Intergenic L1PA15-16|LINE|L1 23071 NM_175735 254773 Hs.436468 NM_175735 ENSG00000185674 LYG2 LYGH|LYSG2 lysozyme g2 protein-coding 230-354 chr7 62723541 62723720 + 2 NA Intergenic ALR/Alpha|Satellite|centr 580426 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 207-210 chr4 27898529 27898702 + 2 NA Intergenic Intergenic 681136 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 285-444 chr9 5992123 5992265 + 2 NA intron (NM_001017969, intron 1 of 7) L2a|LINE|L2 -15632 NR_039811 100616288 NR_039811 ENSG00000263575 MIR4665 mir-4665 microRNA 4665 ncRNA 282-124 chr14 51542831 51543036 + 2 NA intron (NM_001042481, intron 1 of 14) L1MB5|LINE|L1 53805 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 319-472 chr6 118765531 118765808 + 2 NA Intergenic L1PA16|LINE|L1 -17039 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 760-55 chr4 112897867 112898406 + 2 NA intron (NM_001354271, intron 1 of 42) L1MC3|LINE|L1 37149 NM_001354264 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 601-26 chr11 112966916 112967359 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -3677 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 557-186 chr7 71071659 71072050 + 2 NA Intergenic AluJb|SINE|Alu -60290 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 266-82 chr12 16092959 16093178 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 181736 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 189-221 chr9 12012752 12012902 + 2 NA Intergenic L1MB1|LINE|L1 -680558 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 369-24 chr1 231143247 231143524 + 2 NA Intergenic L1MA4A|LINE|L1 -19543 NM_001300889 440730 Hs.655089 NM_001004342 ENSG00000119283 TRIM67 TNL tripartite motif containing 67 protein-coding 253-254 chr3 53454734 53454939 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -39775 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 375-326 chr5 91660151 91660392 + 2 NA Intergenic HAL1ME|LINE|L1 -276954 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 469-108 chr17 52416055 52416520 + 2 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 25765 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 258-27 chr1 196523501 196523660 + 2 NA intron (NM_001287820, intron 1 of 26) MLT1K|LTR|ERVL-MaLR 58901 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 203-218 chr7 45073024 45073187 + 2 NA intron (NM_001029835, intron 7 of 9) intron (NM_001029835, intron 7 of 9) 15864 NM_001146334 23148 Hs.96633 NM_001146334 ENSG00000136274 NACAD - NAC alpha domain containing protein-coding 245-109 chr12 127186083 127186284 + 2 NA Intergenic L1MD|LINE|L1 98100 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 219-97 chr14 48422955 48423103 + 2 NA Intergenic Intergenic -628015 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 217-390 chr9 79888107 79888294 + 2 NA intron (NR_121213, intron 1 of 2) ERVL-E-int|LTR|ERVL 63670 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 189-135 chr3 187555959 187556083 + 2 NA Intergenic L1MEf|LINE|L1 108975 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 299-238 chr2 182669164 182669433 + 2 NA Intergenic Intergenic -46959 NR_073365 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 527-138 chr2 122444068 122444340 + 2 NA Intergenic L1MA8|LINE|L1 629277 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 432-119 chr2 18633480 18633736 + 2 NA Intergenic L1PA11|LINE|L1 -44028 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 457-23 chr10 11394840 11395106 + 2 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat -50299 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 221-309 chr8 128357971 128358139 + 2 NA Intergenic Intergenic 206624 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 260-201 chr2 19221567 19221740 + 2 NA Intergenic Intergenic -126776 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 321-7 chr1 42027798 42028089 + 2 NA intron (NR_038261, intron 1 of 3) THE1A|LTR|ERVL-MaLR 7991 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 414-335 chr8 129302365 129302735 + 2 NA Intergenic L1PBa|LINE|L1 -61310 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 534-64 chr12 71489590 71490059 + 2 NA intron (NR_110596, intron 1 of 19) AluJo|SINE|Alu 50026 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 223-157 chr2 81445156 81445303 + 2 NA Intergenic Intergenic 21717 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 383-29 chr10 15970012 15970280 + 2 NA Intergenic Intergenic -109613 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 307-510 chr9 24587774 24588017 + 2 NA Intergenic L1MEg|LINE|L1 -41998 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 362-260 chr22 34869956 34870181 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 127848 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 227-64 chr11 67131781 67131980 + 2 NA intron (NR_027473, intron 2 of 20) intron (NR_027473, intron 2 of 20) 12617 NR_027473 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 401-268 chr5 141482111 141482445 + 2 NA intron (NM_002588, intron 1 of 3) MIRb|SINE|MIR -2896 NM_032406 56098 Hs.368160 NM_018928 ENSG00000242419 PCDHGC4 PCDH-GAMMA-C4 protocadherin gamma subfamily C, 4 protein-coding 214-20 chr1 114020381 114020519 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR 40976 NM_020190 56944 Hs.9315 NM_020190 ENSG00000116774 OLFML3 HNOEL-iso|OLF44 olfactomedin like 3 protein-coding 266-38 chr10 54729888 54730049 + 2 NA intron (NM_001354404, intron 4 of 34) L1PA15|LINE|L1 71263 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 219-189 chr2 192670535 192670667 + 2 NA Intergenic Intergenic -79244 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 567-65 chr16 23018112 23018536 + 2 NA Intergenic L2a|LINE|L2 130946 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 403-70 chr12 32078018 32078374 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -28611 NM_001363603 636 Hs.505202 NM_001714 ENSG00000151746 BICD1 BICD|bic-D 1 BICD cargo adaptor 1 protein-coding 378-34 chr1 204001247 204001474 + 2 NA Intergenic Intergenic 39904 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 164-50 chr18 76121952 76122066 + 2 NA promoter-TSS (NR_040034) promoter-TSS (NR_040034) -989 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 352-238 chr2 75053582 75053823 + 2 NA exon (NM_001058, exon 3 of 5) exon (NM_001058, exon 3 of 5) -37110 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 317-292 chr3 2189372 2189565 + 2 NA intron (NM_175607, intron 2 of 24) intron (NM_175607, intron 2 of 24) -45227 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 252-416 chr8 56364590 56364835 + 2 NA Intergenic L1MA5|LINE|L1 25998 NR_103832 442388 Hs.632065 NM_001145251 ENSG00000253542 SDR16C6P SDR16C6 short chain dehydrogenase/reductase family 16C member 6, pseudogene pseudo 321-553 chr8 82688493 82688743 + 2 NA Intergenic L1MA4|LINE|L1 -223486 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 246-313 chr5 12972765 12972955 + 2 NA intron (NR_147005, intron 2 of 4) MER85|DNA|PiggyBac 60026 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 312-144 chr14 53142850 53143012 + 2 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 10392 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 238-147 chr18 14114733 14114901 + 2 NA intron (NM_145287, intron 2 of 2) L1MA2|LINE|L1 17618 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 609-9 chr10 56584736 56585249 + 2 NA Intergenic Intergenic -223719 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 568-43 chr13 100908412 100908856 + 2 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 35730 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 541-32 chr11 50670930 50671361 + 2 NA Intergenic ALR/Alpha|Satellite|centr 261998 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 883-4 chr11 78711629 78712329 + 2 NA intron (NM_001098816, intron 26 of 33) intron (NM_001098816, intron 26 of 33) -137115 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 331-402 chr5 2604988 2605224 + 2 NA Intergenic L1MC|LINE|L1 -107485 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 249-301 chr4 65632216 65632353 + 2 NA intron (NM_001281767, intron 2 of 16) intron (NM_001281767, intron 2 of 16) 37204 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 294-69 chr11 110500076 110500280 + 2 NA Intergenic L1MB4|LINE|L1 70230 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 260-16 chr1 107765622 107765844 + 2 NA intron (NM_006113, intron 8 of 26) intron (NM_006113, intron 8 of 26) -77234 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 323-92 chr11 90583625 90583845 + 2 NA intron (NR_104190, intron 2 of 6) MIRb|SINE|MIR -27878 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 607-119 chr5 101162259 101162596 + 2 NA Intergenic L1PA13|LINE|L1 -259145 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 400-243 chr4 40386498 40386753 + 2 NA Intergenic Intergenic 51292 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 520-253 chr6 49692986 49693404 + 2 NA intron (NM_001261822, intron 8 of 8) intron (NM_001261822, intron 8 of 8) 20348 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 581-15 chr10 58884869 58885348 + 2 NA Intergenic L3|LINE|CR1 -114410 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 205-207 chr4 104829693 104829846 + 2 NA Intergenic Intergenic -316106 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 250-228 chr2 186510427 186510620 + 2 NA Intergenic Intergenic 24263 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 284-162 chr17 56354345 56354556 + 2 NA intron (NM_001370326, intron 6 of 20) L2a|LINE|L2 200975 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 680-67 chr2 154392704 154393238 + 2 NA intron (NM_052917, intron 9 of 12) L2a|LINE|L2 64467 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 385-246 chr3 94424536 94424899 + 2 NA Intergenic L1PA6|LINE|L1 361656 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 262-169 chr17 55376886 55377104 + 2 NA Intergenic FAM|SINE|Alu 44840 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 136-19 chr12 125539855 125539962 + 2 NA intron (NM_052907, intron 4 of 8) L1M5|LINE|L1 -82544 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 202-33 chr10 82809393 82809553 + 2 NA intron (NR_163252, intron 3 of 8) L1ME3E|LINE|L1 -576553 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 133-79 chr8 79817067 79817167 + 2 NA intron (NR_110954, intron 3 of 5) intron (NR_110954, intron 3 of 5) 48975 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 352-113 chr12 97793400 97793640 + 2 NA Intergenic L1ME4b|LINE|L1 -37003 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 293-465 chr8 140177582 140177813 + 2 NA intron (NM_001160372, intron 17 of 22) L1ME1|LINE|L1 -77162 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 259-134 chr15 52920566 52920790 + 2 NA Intergenic Intergenic -130342 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 577-144 chr5 25467805 25468174 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 277036 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 481-22 chr10 19309822 19310294 + 2 NA intron (NM_001142308, intron 21 of 39) LTR33A_|LTR|ERVL 261257 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 1324-2 chr2 74755284 74756143 + 2 NA Intergenic AluJb|SINE|Alu -76942 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 349-265 chr2 108519987 108520164 + 2 NA intron (NR_135290, intron 1 of 2) AluSc8|SINE|Alu 14144 NR_135290 644903 NM_032658 ENSG00000214184 GCC2-AS1 - GCC2 antisense RNA 1 ncRNA 366-353 chr5 139913027 139913245 + 2 NA intron (NM_013983, intron 1 of 10) intron (NM_013983, intron 1 of 10) 117328 NM_032289 84249 Hs.21963 NM_032289 ENSG00000146005 PSD2 EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 330-304 chr2 181763052 181763259 + 2 NA Intergenic Intergenic -82490 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 161-18 chr11 79083997 79084087 + 2 NA intron (NM_001098816, intron 4 of 33) L1MD2|LINE|L1 318067 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 504-224 chr6 41309456 41309890 + 2 NA Intergenic Intergenic -22928 NR_136332 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 287-373 chr7 7455990 7456262 + 2 NA intron (NM_001037763, intron 15 of 34) intron (NM_001037763, intron 15 of 34) 79747 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 342-351 chr4 30655103 30655348 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -65144 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 432-56 chr11 131205509 131205837 + 2 NA Intergenic Intergenic -164942 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 733-20 chr16 79150113 79150545 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 450408 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 285-100 chr13 61443290 61443525 + 2 NA Intergenic Intergenic -15461 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 507-284 chrX 56607637 56608121 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 44286 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 241-27 chr1 226032908 226033126 + 2 NA Intergenic Intergenic -29699 NM_002107 3020 Hs.533624 NM_002107 ENSG00000163041 H3F3A H3.3A|H3F3 H3 histone family member 3A protein-coding 356-336 chr3 154543338 154543635 + 2 NA Intergenic Intergenic -113296 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 327-233 chr2 6734248 6734453 + 2 NA intron (NR_038369, intron 2 of 5) intron (NR_038369, intron 2 of 5) 35961 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 320-409 chr4 156725830 156726044 + 2 NA Intergenic Intergenic 245862 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 381-94 chr13 68826867 68827068 + 2 NA Intergenic L1PA13|LINE|L1 58358 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 355-351 chr4 10393123 10393366 + 2 NA Intergenic L1MA3|LINE|L1 64182 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 341-125 chr12 86293316 86293608 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -36163 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 320-162 chr14 94854583 94854860 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 84079 NR_144432 108868751 NR_144432 GSC-DT DIGIT GSC divergent transcript ncRNA 529-7 chr1 191284141 191284560 + 2 NA Intergenic L1M2|LINE|L1 -55852 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 295-321 chr4 19438390 19438552 + 2 NA Intergenic Intergenic -813434 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 351-161 chr16 53470189 53470374 + 2 NA intron (NM_001323608, intron 15 of 22) intron (NM_001323608, intron 15 of 22) 32928 NM_022476 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 335-177 chr15 87105287 87105486 + 2 NA Intergenic L1MA4A|LINE|L1 -116960 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 356-238 chr2 58729016 58729301 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 208405 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 408-49 chr10 123042700 123043039 + 2 NA intron (NM_001609, intron 5 of 10) intron (NM_001609, intron 5 of 10) 33863 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 359-337 chr3 173135961 173136164 + 2 NA intron (NM_031955, intron 1 of 10) intron (NM_031955, intron 1 of 10) 5173 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 232-126 chr16 78675621 78675782 + 2 NA intron (NM_001291997, intron 7 of 7) AluJr4|SINE|Alu 576047 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 144-13 chr10 56992796 56992919 + 2 NA Intergenic MIRb|SINE|MIR 311702 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 367-418 chr7 48785712 48785965 + 2 NA Intergenic MIR|SINE|MIR -138709 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 263-170 chr18 47612079 47612243 + 2 NA Intergenic Intergenic 231665 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 125-20 chr16 73438660 73438779 + 2 NA Intergenic Intergenic 51914 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 296-406 chr6 80440879 80441112 + 2 NA Intergenic Intergenic 334324 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 310-491 chr7 96537080 96537334 + 2 NA intron (NR_163953, intron 2 of 5) L1MCa|LINE|L1 -33684 NM_001201451 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 225-312 chr6 140036048 140036189 + 2 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -44857 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 305-249 chr2 46418207 46418399 + 2 NA Intergenic L1MA7|LINE|L1 -10887 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 310-185 chr17 31624578 31624748 + 2 NA Intergenic AluSp|SINE|Alu 49252 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 192-182 chr7 1022266 1022444 + 2 NA TTS (NR_029898) TTS (NR_029898) 671 NR_029898 442907 NR_029898 ENSG00000199023 MIR339 MIRN339|hsa-mir-339|mir-339 microRNA 339 ncRNA 273-311 chr3 194673985 194674252 + 2 NA Intergenic Intergenic -1927 NM_018385 55341 Hs.744061 NM_018385 ENSG00000041802 LSG1 - large 60S subunit nuclear export GTPase 1 protein-coding 243-38 chr10 43550831 43551058 + 2 NA Intergenic L1MD1|LINE|L1 17515 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 308-111 chr12 79221415 79221617 + 2 NA intron (NM_001291901, intron 3 of 9) L1MA8|LINE|L1 175824 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 278-252 chr20 48546732 48546883 + 2 NA Intergenic Intergenic 186896 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 247-173 chr19 8919041 8919236 + 2 NA intron (NM_024690, intron 10 of 83) (TA)n|Simple_repeat|Simple_repeat 62204 NM_024690 94025 Hs.432676 NM_024690 ENSG00000181143 MUC16 CA125 mucin 16, cell surface associated protein-coding 908-27 chr3 50867123 50867830 + 2 NA intron (NM_004947, intron 3 of 52) L1MA2|LINE|L1 192396 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 352-345 chr4 13215377 13215588 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy 268858 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 272-371 chr6 8002158 8002391 + 2 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) 16172 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 221-126 chr18 61363970 61364155 + 2 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 30632 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 322-176 chr15 61933591 61933761 + 2 NA intron (NM_001018088, intron 49 of 81) intron (NM_001018088, intron 49 of 81) 126771 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 364-466 chr9 16569422 16569738 + 2 NA intron (NM_001317939, intron 3 of 6) intron (NM_001317939, intron 3 of 6) -157234 NR_151723 111216284 Hs.609218 NR_151723 ENSG00000234779 BNC2-AS1 - BNC2 antisense RNA 1 ncRNA 504-54 chr12 40114682 40115146 + 2 NA Intergenic Intergenic -8833 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 511-2 chr1 38191023 38191441 + 2 NA Intergenic Intergenic 23535 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 202-31 chr10 58021056 58021209 + 2 NA Intergenic L3b|LINE|CR1 246762 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 139-41 chr19 31978948 31979042 + 2 NA Intergenic Intergenic -46867 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 475-88 chr15 56161332 56161692 + 2 NA intron (NM_001368073, intron 2 of 8) intron (NM_001368073, intron 2 of 8) 28420 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 402-74 chr13 63222110 63222360 + 2 NA intron (NR_126409, intron 5 of 6) L1MA6|LINE|L1 105859 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 189-104 chr2 204582034 204582187 + 2 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 36635 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 531-143 chr21 28786789 28787222 + 2 NA Intergenic L1PB|LINE|L1 98362 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 152-86 chr7 46845413 46845550 + 2 NA Intergenic Intergenic -148359 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 292-121 chr13 40307900 40308064 + 2 NA Intergenic Intergenic -87480 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 399-340 chrX 83786703 83786942 + 2 NA Intergenic L1MA5A|LINE|L1 -74304 NM_001271680 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 484-73 chr15 27160186 27160501 + 2 NA intron (NR_120343, intron 1 of 2) intron (NR_120343, intron 1 of 2) 976 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 280-116 chr14 50034863 50035023 + 2 NA intron (NR_131171, intron 6 of 8) MIR|SINE|MIR -27423 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 249-25 chr1 181566537 181566701 + 2 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 83102 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 298-11 chr1 88424914 88425185 + 2 NA Intergenic L1MA4A|LINE|L1 -259095 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 334-405 chr4 187636105 187636314 + 2 NA intron (NR_110436, intron 2 of 2) L2c|LINE|L2 36432 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 482-103 chr18 1753050 1753458 + 2 NA Intergenic L1MA9|LINE|L1 -393625 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 387-80 chr12 51945010 51945348 + 2 NA Intergenic L1MEd|LINE|L1 -6520 NM_020328 91 Hs.438918 NM_004302 ENSG00000135503 ACVR1B ACTRIB|ACVRLK4|ALK4|SKR2 activin A receptor type 1B protein-coding 375-242 chr20 60689078 60689317 + 2 NA Intergenic L1M5|LINE|L1 124635 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 199-61 chr14 66817213 66817376 + 2 NA intron (NM_001024218, intron 3 of 21) intron (NM_001024218, intron 3 of 21) 309887 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 486-97 chr15 53739694 53740069 + 2 NA intron (NR_102334, intron 1 of 19) intron (NR_102334, intron 1 of 19) 19782 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 369-207 chr2 114296125 114296349 + 2 NA Intergenic MER4D|LTR|ERV1 -146404 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 460-244 chr5 104715129 104715445 + 2 NA Intergenic Intergenic -384187 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 648-21 chr11 70940650 70941070 + 2 NA intron (NM_012309, intron 9 of 24) intron (NM_012309, intron 9 of 24) -68492 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 338-400 chr5 2517245 2517465 + 2 NA Intergenic Intergenic -195236 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 441-236 chr7 3944226 3944599 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -185273 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 203-38 chr11 81474310 81474463 + 2 NA Intergenic Intergenic 416450 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 314-603 chr9 30057961 30058186 + 2 NA Intergenic HAL1b|LINE|L1 350381 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 409-105 chr16 77472508 77472739 + 2 NA Intergenic L1MEc|LINE|L1 -37589 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 368-241 chr2 132484333 132484582 + 2 NA intron (NM_001508, intron 1 of 1) L1MEd|LINE|L1 50746 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 312-123 chr13 40874003 40874172 + 2 NA intron (NR_038259, intron 1 of 5) HERVL-int|LTR|ERVL 47663 NR_038258 100616668 Hs.660718 NR_038258 TPTE2P5 - transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 pseudogene 5 pseudo 359-330 chr3 107948636 107948877 + 2 NA Intergenic Intergenic 65551 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 218-39 chr10 128763330 128763470 + 2 NA Intergenic Intergenic -149433 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 341-82 chr11 40053011 40053195 + 2 NA Intergenic Intergenic 240027 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 664-54 chr2 82886381 82886947 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 29861 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 278-395 chr7 51189617 51189835 + 2 NA intron (NM_015198, intron 4 of 12) intron (NM_015198, intron 4 of 12) 127083 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 298-102 chr12 129991617 129991867 + 2 NA Intergenic Intergenic 50600 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 283-230 chr2 58036363 58036563 + 2 NA intron (NM_001288838, intron 3 of 15) intron (NM_001288838, intron 3 of 15) -10179 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 240-348 chr5 36626590 36626766 + 2 NA intron (NM_001289939, intron 2 of 8) intron (NM_001289939, intron 2 of 8) 20072 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 415-131 chr2 123810710 123811051 + 2 NA Intergenic L1PA13|LINE|L1 214294 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 217-64 chr11 29377622 29377785 + 2 NA Intergenic L1M5|LINE|L1 -216710 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 198-116 chr2 19267608 19267739 + 2 NA Intergenic L1ME3G|LINE|L1 -80756 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 166-75 chr3 90117250 90117367 + 2 NA Intergenic Intergenic 1009687 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 553-120 chr2 101952981 101953360 + 2 NA Intergenic Intergenic -30295 NR_103791 100506328 Hs.516245 NR_103791 LINC01127 - long intergenic non-protein coding RNA 1127 ncRNA 304-257 chr2 79518095 79518292 + 2 NA intron (NM_001164883, intron 1 of 16) intron (NM_001164883, intron 1 of 16) -4990 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 386-19 chr1 212901999 212902271 + 2 NA Intergenic L1M3c|LINE|L1 43860 NM_014053 28982 Hs.7055 NM_014053 ENSG00000162769 FLVCR1 AXPC1|FLVCR|MFSD7B|PCA|PCARP|SLC49A1 feline leukemia virus subgroup C cellular receptor 1 protein-coding 181-26 chr11 35245532 35245638 + 2 NA Intergenic LTR16A1|LTR|ERVL 82635 NR_145794 109623487 NR_145794 SNORD164 - small nucleolar RNA, C/D box 164 snoRNA 267-189 chr2 68554088 68554260 + 2 NA intron (NM_173545, intron 8 of 9) intron (NM_173545, intron 8 of 9) 86589 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 357-336 chr5 22718957 22719151 + 2 NA intron (NM_004061, intron 1 of 14) MER77|LTR|ERVL 134290 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 215-311 chr8 69253521 69253696 + 2 NA Intergenic Intergenic -149418 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 320-267 chr2 99139731 99139976 + 2 NA intron (NM_001349013, intron 1 of 16) L1ME3B|LINE|L1 1327 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 683-59 chr4 35963477 35964118 + 2 NA Intergenic L1MC3|LINE|L1 280142 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 339-462 chr5 130155622 130155959 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 251325 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 359-69 chr10 94942874 94943110 + 2 NA intron (NM_000771, intron 3 of 8) intron (NM_000771, intron 3 of 8) 4334 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 321-404 chr4 12318249 12318479 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie 94913 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 132-72 chr6 125334493 125334596 + 2 NA Intergenic L1MB1|LINE|L1 -32577 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 299-436 chr8 15774160 15774426 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 234030 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 227-95 chr13 54254586 54254755 + 2 NA Intergenic Intergenic 57378 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 267-438 chr8 134901158 134901360 + 2 NA Intergenic Intergenic 51324 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 323-260 chr2 105162757 105162978 + 2 NA Intergenic Intergenic 18754 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 357-497 chrX 117081481 117081759 + 2 NA Intergenic L1PA10|LINE|L1 -263760 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 161-96 chr6 133846111 133846248 + 2 NA intron (NR_109982, intron 1 of 8) intron (NR_109982, intron 1 of 8) 25032 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 361-213 chr2 53370072 53370326 + 2 NA Intergenic Intergenic -397584 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 608-75 chr2 134501195 134501614 + 2 NA intron (NM_030923, intron 5 of 7) intron (NM_030923, intron 5 of 7) 217596 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 352-51 chr10 65561113 65561397 + 2 NA Intergenic MER4B|LTR|ERV1 -10170 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 412-149 chr2 22162919 22163304 + 2 NA Intergenic Intergenic -373368 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 798-38 chr3 54477362 54477926 + 2 NA intron (NM_018398, intron 4 of 37) L2|LINE|L2 162213 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 295-293 chr3 50994388 50994543 + 2 NA intron (NM_004947, intron 5 of 52) MIR|SINE|MIR 319385 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 346-496 chr8 124002635 124002952 + 2 NA intron (NM_001039112, intron 12 of 40) intron (NM_001039112, intron 12 of 40) 37989 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 607-62 chr18 53497783 53498323 + 2 NA intron (NM_005215, intron 26 of 28) intron (NM_005215, intron 26 of 28) -70394 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 568-113 chr2 132467707 132468084 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 34184 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 236-265 chr4 131324970 131325186 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -439760 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 396-140 chr19 4380191 4380488 + 2 NA intron (NM_003025, intron 1 of 9) intron (NM_003025, intron 1 of 9) 20208 NM_001199944 6455 Hs.97616 NM_003025 ENSG00000141985 SH3GL1 CNSA1|EEN|SH3D2B|SH3P8 SH3 domain containing GRB2 like 1, endophilin A2 protein-coding 363-401 chr7 3397043 3397252 + 2 NA intron (NM_152744, intron 1 of 44) L1MB4|LINE|L1 95895 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 525-91 chr17 65414300 65414651 + 2 NA Intergenic Intergenic -43066 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 295-165 chr16 53046156 53046419 + 2 NA intron (NR_147075, intron 2 of 2) intron (NR_147075, intron 2 of 2) 6586 NR_136518 105371267 Hs.147562 NR_136518 ENSG00000277639 LOC105371267 PR-lncRNA-1 p53-regulated lncRNA 1 ncRNA 301-477 chr9 13929306 13929600 + 2 NA intron (NR_038194, intron 1 of 2) L1MC4|LINE|L1 1482 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 170-111 chr5 2394110 2394271 + 2 NA Intergenic Intergenic -81989 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 250-108 chr13 69833433 69833615 + 2 NA intron (NM_001286725, intron 5 of 9) L1PB1|LINE|L1 -273689 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 334-384 chr4 94371653 94371851 + 2 NA Intergenic Intergenic -28916 NM_014485 27306 Hs.128433 NM_014485 ENSG00000163106 HPGDS GSTS|GSTS1|GSTS1-1|PGD2|PGDS hematopoietic prostaglandin D synthase protein-coding 221-176 chr3 5742625 5742789 + 2 NA Intergenic Intergenic -492452 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 430-245 chr5 62471449 62471764 + 2 NA intron (NM_016338, intron 7 of 29) L1ME4a|LINE|L1 52722 NM_001134779 51194 Hs.482269 NM_016338 ENSG00000086200 IPO11 RanBP11 importin 11 protein-coding 144-44 chr2 33834096 33834215 + 2 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -105938 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 294-242 chr2 174322519 174322739 + 2 NA Intergenic Intergenic -3398 NR_038897 285084 Hs.275398 NR_038897 ENSG00000231453 LINC01305 - long intergenic non-protein coding RNA 1305 ncRNA 208-241 chr7 7363661 7363797 + 2 NA intron (NM_001037763, intron 33 of 34) L1ME4a|LINE|L1 108575 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 591-134 chr5 95733104 95733527 + 2 NA intron (NM_014899, intron 2 of 11) intron (NM_014899, intron 2 of 11) -1213 NM_001349303 83890 Hs.50499 NM_031952 ENSG00000145757 SPATA9 NYD-SP16 spermatogenesis associated 9 protein-coding 329-188 chr15 57063806 57064055 + 2 NA intron (NM_207038, intron 4 of 19) intron (NM_207038, intron 4 of 19) 144485 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 348-423 chr5 113433930 113434124 + 2 NA exon (NM_032028, exon 1 of 1) exon (NM_032028, exon 1 of 1) 962 NM_032028 83942 Hs.519507 NM_032028 ENSG00000212122 TSSK1B FKSG81|SPOGA4|STK22D|TSK1|TSSK1 testis specific serine kinase 1B protein-coding 209-252 chr5 41174794 41174998 + 2 NA intron (NM_000065, intron 8 of 17) intron (NM_000065, intron 8 of 17) 38636 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 460-110 chr17 65907434 65907734 + 2 NA intron (NM_001353129, intron 19 of 26) intron (NM_001353129, intron 19 of 26) -81041 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 372-219 chr2 34746673 34747015 + 2 NA Intergenic Intergenic 69287 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 439-154 chr2 193353263 193353640 + 2 NA Intergenic L1PB|LINE|L1 603606 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 390-387 chr8 104062336 104062640 + 2 NA intron (NM_001348499, intron 19 of 23) intron (NM_001348499, intron 19 of 23) -160847 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 326-472 chr6 145365560 145365848 + 2 NA Intergenic Intergenic 321173 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 311-400 chr5 30147722 30147919 + 2 NA Intergenic Intergenic 267260 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 428-29 chr10 107135752 107136089 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 28786 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 452-30 chr10 54874891 54875276 + 2 NA intron (NM_001354404, intron 4 of 34) Tigger1|DNA|TcMar-Tigger -73792 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 238-287 chr5 17870166 17870313 + 2 NA intron (NR_134286, intron 4 of 7) L1MA2|LINE|L1 62965 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 323-560 chr8 125253657 125253933 + 2 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) 161935 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 254-142 chr16 74219091 74219246 + 2 NA Intergenic Intergenic -3647 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 123-30 chr21 16629682 16629770 + 2 NA intron (NR_136541, intron 9 of 9) intron (NR_136541, intron 9 of 9) 39489 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 666-41 chr17 74561816 74562254 + 2 NA intron (NM_001324076, intron 2 of 2) intron (NM_001324076, intron 2 of 2) 5308 NM_001324073 100130520 NM_001324073 ENSG00000284690 CD300H CD300Hs CD300H molecule (gene/pseudogene) protein-coding 361-293 chr3 106901316 106901523 + 2 NA Intergenic Intergenic 339219 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 441-264 chr8 95999704 95999990 + 2 NA Intergenic L1MEc|LINE|L1 -51499 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 344-519 chr9 77768342 77768671 + 2 NA intron (NM_002072, intron 5 of 6) MIRc|SINE|MIR -120184 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 583-81 chr2 21651237 21651563 + 2 NA Intergenic Intergenic 59252 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 402-285 chr5 129778426 129778741 + 2 NA Intergenic L1MA4|LINE|L1 30489 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 373-88 chr12 40948783 40949057 + 2 NA intron (NM_001256064, intron 14 of 15) intron (NM_001256064, intron 14 of 15) 40563 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 411-12 chr1 187833326 187833716 + 2 NA Intergenic Intergenic 389893 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 482-175 chr3 189862317 189862626 + 2 NA intron (NM_003722, intron 4 of 13) intron (NM_003722, intron 4 of 13) 32549 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 385-43 chr10 130303397 130303735 + 2 NA Intergenic Intergenic 167157 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 180-172 chr8 87877732 87877871 + 2 NA Intergenic Intergenic -3786 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 199-257 chr9 31863673 31863772 + 2 NA Intergenic L1MA5A|LINE|L1 -482232 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 240-213 chr2 58726831 58727007 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 206166 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 308-355 chr4 113046975 113047160 + 2 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -2347 NM_020977 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 315-233 chr2 45910985 45911201 + 2 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 259418 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 347-195 chr19 58094525 58094750 + 2 NA intron (NM_001145542, intron 1 of 6) AluJo|SINE|Alu 3594 NM_001145544 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 347-240 chr2 123600311 123600489 + 2 NA Intergenic Intergenic 424774 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 273-451 chr8 83310610 83310778 + 2 NA Intergenic Intergenic -93064 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 443-204 chr3 95570058 95570453 + 2 NA Intergenic Intergenic 112938 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 312-315 chr22 48788284 48788497 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 8095 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 287-6 chr1 48084036 48084299 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -86782 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 380-416 chr8 141829783 141829986 + 2 NA Intergenic Intergenic -43571 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 315-154 chr15 76776807 76777024 + 2 NA intron (NM_001353011, intron 9 of 32) L1MDa|LINE|L1 85029 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 380-397 chr8 87071593 87071805 + 2 NA intron (NM_173538, intron 4 of 10) L1PA10|LINE|L1 205284 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 276-257 chr20 5435260 5435503 + 2 NA intron (NR_038240, intron 2 of 4) FLAM_C|SINE|Alu 10367 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 343-323 chr22 43864162 43864360 + 2 NA Intergenic L1MC5a|LINE|L1 -1748 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 509-39 chr11 47876837 47877310 + 2 NA Intergenic L1MB3|LINE|L1 -28529 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 271-489 chrX 75037048 75037240 + 2 NA Intergenic L1PA7|LINE|L1 -111692 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 341-271 chr2 159644077 159644321 + 2 NA Intergenic MLT1A-int|LTR|ERVL-MaLR -27598 NM_001289975 29994 Hs.470369 NM_013450 ENSG00000123636 BAZ2B WALp4 bromodomain adjacent to zinc finger domain 2B protein-coding 269-82 chr12 20043211 20043440 + 2 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 28640 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 291-217 chr2 72074709 72074951 + 2 NA Intergenic L1ME1|LINE|L1 73032 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 223-87 chr14 58662733 58662930 + 2 NA Intergenic Intergenic 23994 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 319-56 chr10 55078459 55078621 + 2 NA intron (NM_001354404, intron 3 of 34) L1MA4A|LINE|L1 -277249 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 338-257 chr2 59380693 59381000 + 2 NA Intergenic L1MA4A|LINE|L1 163138 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 252-16 chr1 114667623 114667853 + 2 NA intron (NM_001256404, intron 1 of 20) intron (NM_001256404, intron 1 of 20) 2311 NM_001256404 163259 Hs.654928 NM_198459 ENSG00000175984 DENND2C dJ1156J9.1 DENN domain containing 2C protein-coding 189-106 chr2 215639850 215639990 + 2 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -78123 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 428-44 chr12 23597221 23597520 + 2 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) -12784 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 299-283 chr3 83329643 83329908 + 2 NA Intergenic LTR40A1|LTR|ERVL 1343633 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 553-3 chr1 36874839 36875182 + 2 NA intron (NM_000831, intron 3 of 15) intron (NM_000831, intron 3 of 15) 159505 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 335-161 chr14 66957704 66958008 + 2 NA intron (NM_020806, intron 8 of 22) MER1B|DNA|hAT-Charlie -231584 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 544-75 chr15 54964602 54964992 + 2 NA Intergenic L1M4a1|LINE|L1 -91950 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 227-50 chr10 90095096 90095246 + 2 NA Intergenic Intergenic -137798 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 368-32 chr1 190057092 190057295 + 2 NA Intergenic L1PA16|LINE|L1 418817 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 301-10 chr1 106315303 106315519 + 2 NA Intergenic L1MA4|LINE|L1 -287158 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 232-314 chr5 136590453 136590620 + 2 NA Intergenic L1PA16|LINE|L1 -225060 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 264-223 chr2 180434413 180434569 + 2 NA Intergenic Intergenic -257613 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 584-155 chr6 106403274 106403815 + 2 NA intron (NM_001371242, intron 1 of 21) intron (NM_001371242, intron 1 of 21) 42827 NM_001371242 264-237 chr20 16046023 16046202 + 2 NA intron (NM_001351663, intron 17 of 17) intron (NM_001351663, intron 17 of 17) -60230 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 165-115 chr6 145578830 145578919 + 2 NA Intergenic MLT2B3|LTR|ERVL 108003 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 217-348 chr7 31875664 31875794 + 2 NA intron (NM_001191059, intron 6 of 18) intron (NM_001191059, intron 6 of 18) 188514 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 527-121 chr2 30016601 30016974 + 2 NA Intergenic L1MEi|LINE|L1 -95201 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 223-245 chr4 38947693 38947893 + 2 NA Intergenic Intergenic 79761 NR_030300 693159 NR_030300 ENSG00000207944 MIR574 MIR574-3p|MIRN574|hsa-mir-574|mir-574 microRNA 574 ncRNA 230-257 chr4 33307728 33307955 + 2 NA Intergenic Intergenic 732052 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 232-111 chr15 36622107 36622263 + 2 NA intron (NM_001290232, intron 1 of 10) intron (NM_001290232, intron 1 of 10) 27308 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 287-107 chr12 23375143 23375355 + 2 NA Intergenic L1PA17|LINE|L1 199613 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 528-168 chr3 177803328 177803713 + 2 NA Intergenic Intergenic -13345 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 265-13 chr1 90721994 90722189 + 2 NA Intergenic Intergenic -4789 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 399-191 chr21 30110538 30110917 + 2 NA Intergenic Intergenic 56078 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 187-63 chr16 70552558 70552670 + 2 NA intron (NM_012426, intron 11 of 25) intron (NM_012426, intron 11 of 25) 14609 NR_003079 692214 NR_003079 ENSG00000221066 SNORD111 HBII-82 small nucleolar RNA, C/D box 111 snoRNA 294-377 chr5 60578144 60578357 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -81964 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 445-263 chr8 24275677 24276045 + 2 NA Intergenic Intergenic -18179 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 307-198 chr18 7322710 7322967 + 2 NA Intergenic Intergenic 91734 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 221-185 chr3 63372051 63372229 + 2 NA intron (NM_001130003, intron 2 of 5) L1PREC2|LINE|L1 -71172 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 511-12 chr1 164528908 164529257 + 2 NA Intergenic LTR8B|LTR|ERV1 -30278 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 394-85 chr12 60289364 60289650 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 600137 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 259-154 chr16 82805530 82805737 + 2 NA intron (NR_110938, intron 1 of 2) intron (NR_110938, intron 1 of 2) 32314 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 284-326 chr5 89218037 89218245 + 2 NA intron (NR_136219, intron 7 of 9) LTR33|LTR|ERVL -314036 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 334-75 chr10 116992600 116992872 + 2 NA intron (NM_001258300, intron 2 of 17) MER34B-int|LTR|ERV1 12451 NM_018330 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 362-455 chr8 140865486 140865690 + 2 NA intron (NM_001352737, intron 3 of 32) intron (NM_001352737, intron 3 of 32) -132935 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 218-178 chr2 174171545 174171685 + 2 NA intron (NM_001011708, intron 3 of 9) L1ME1|LINE|L1 76917 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 279-204 chr2 184726741 184726922 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 128302 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 364-17 chr1 88421217 88421515 + 2 NA Intergenic L1MB3|LINE|L1 -262778 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 256-31 chr10 11626058 11626232 + 2 NA Intergenic LTR16E2|LTR|ERVL -14356 NR_125732 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 590-84 chr2 161562748 161563158 + 2 NA Intergenic L1PB4|LINE|L1 -55051 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 140-54 chr4 106806682 106806762 + 2 NA Intergenic L1ME3E|LINE|L1 229591 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 294-199 chr2 27983979 27984191 + 2 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -12282 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 430-161 chr2 151784430 151784710 + 2 NA Intergenic L1ME1|LINE|L1 43851 NM_177985 26225 Hs.470233 NM_012097 ENSG00000162980 ARL5A ARFLP5|ARL5 ADP ribosylation factor like GTPase 5A protein-coding 134-16 chr11 15023224 15023304 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -50329 NM_000728 797 Hs.534305 NM_000728 ENSG00000175868 CALCB CALC2|CGRP-II|CGRP2 calcitonin related polypeptide beta protein-coding 172-50 chr19 12142281 12142431 + 2 NA intron (NR_037802, intron 4 of 7) (TTGTT)n|Simple_repeat|Simple_repeat -2006 NM_001203250 7568 Hs.512823 NM_021143 ENSG00000132010 ZNF20 KOX13 zinc finger protein 20 protein-coding 313-441 chr5 98247375 98247663 + 2 NA Intergenic L1M5|LINE|L1 -86280 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 241-101 chr14 38080220 38080375 + 2 NA Intergenic Intergenic -127607 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 205-106 chr15 81978001 81978167 + 2 NA Intergenic L2a|LINE|L2 67934 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 138-69 chr5 68643823 68643892 + 2 NA Intergenic Intergenic 351280 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 430-348 chrX 122798854 122799149 + 2 NA Intergenic L1MA1|LINE|L1 -385242 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 181-73 chr2 130887392 130887500 + 2 NA intron (NM_001367493, intron 1 of 13) L1MEd|LINE|L1 50532 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 224-225 chr4 76438074 76438237 + 2 NA intron (NM_020859, intron 1 of 10) MLT1J|LTR|ERVL-MaLR 2926 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 515-178 chr4 47226286 47226656 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 194904 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 462-35 chr10 100253376 100253713 + 2 NA intron (NM_001303407, intron 4 of 12) intron (NM_001303407, intron 4 of 12) 14094 NM_001303406 55280 Hs.215502 NM_018294 ENSG00000095485 CWF19L1 C19L1|SCAR17|hDrn1 CWF19 like cell cycle control factor 1 protein-coding 372-391 chr5 19964528 19964820 + 2 NA intron (NM_001349562, intron 2 of 13) AluJb|SINE|Alu 23526 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 319-398 chr5 12119205 12119493 + 2 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -214903 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 368-381 chr5 162803102 162803390 + 2 NA Intergenic Intergenic -634325 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 442-116 chr19 30049961 30050331 + 2 NA Intergenic Intergenic 107907 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 259-253 chr3 88909217 88909358 + 2 NA Intergenic L1MC3|LINE|L1 -198334 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 214-23 chr1 199535525 199535643 + 2 NA Intergenic L1M5|LINE|L1 386986 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 405-220 chr4 36575955 36576231 + 2 NA intron (NR_149124, intron 3 of 4) L1PA8|LINE|L1 65807 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 330-333 chr21 34258224 34258483 + 2 NA Intergenic L1MEc|LINE|L1 77676 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 456-230 chr4 105553141 105553435 + 2 NA intron (NM_001242729, intron 1 of 13) intron (NM_001242729, intron 1 of 13) 668 NM_001242729 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 193-161 chr5 9179737 9179843 + 2 NA intron (NM_003966, intron 11 of 22) intron (NM_003966, intron 11 of 22) -125895 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 360-49 chr10 84151851 84152095 + 2 NA intron (NM_014394, intron 8 of 8) intron (NM_014394, intron 8 of 8) 12464 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 536-28 chr10 11061247 11061665 + 2 NA intron (NM_001326345, intron 1 of 13) Tigger1|DNA|TcMar-Tigger 42700 NM_001326345 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 152-19 chr12 16742244 16742353 + 2 NA Intergenic Intergenic -134084 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 473-256 chr7 14046774 14047109 + 2 NA Intergenic Intergenic -55516 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 393-52 chr11 61440480 61440868 + 2 NA intron (NM_017841, intron 3 of 3) intron (NM_017841, intron 3 of 3) 10549 NM_017841 54949 Hs.313247 NM_017841 ENSG00000167985 SDHAF2 C11orf79|PGL2|SDH5 succinate dehydrogenase complex assembly factor 2 protein-coding 235-142 chr17 76746900 76747123 + 2 NA intron (NM_001353019, intron 8 of 13) AluSx|SINE|Alu 9510 NM_001353019 79157 Hs.73965 NM_024311 ENSG00000092931 MFSD11 ET major facilitator superfamily domain containing 11 protein-coding 296-415 chr6 125279068 125279264 + 2 NA intron (NM_016063, intron 4 of 5) HAL1M8|LINE|L1 22801 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 445-23 chr10 31655953 31656207 + 2 NA Intergenic L1ME3Cz|LINE|L1 252846 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 539-138 chr22 34256348 34256845 + 2 NA Intergenic L1MEg|LINE|L1 -333708 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 282-398 chr6 55750449 55750722 + 2 NA Intergenic L1ME3F|LINE|L1 125005 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 330-160 chr14 62848371 62848603 + 2 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 196971 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 475-99 chr16 59765668 59766046 + 2 NA Intergenic MIRb|SINE|MIR -10666 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 317-370 chr5 2479035 2479227 + 2 NA Intergenic Intergenic -166930 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 401-133 chr18 2979726 2979980 + 2 NA intron (NM_014646, intron 1 of 19) intron (NM_014646, intron 1 of 19) 32094 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 620-60 chr2 16379600 16380145 + 2 NA Intergenic L1MEi|LINE|L1 285962 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 491-152 chr21 24197034 24197393 + 2 NA Intergenic Intergenic 124164 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 310-182 chr17 17757854 17758097 + 2 NA intron (NM_030665, intron 2 of 5) MIR1_Amn|SINE|MIR 8327 NR_130894 100861516 Hs.624874 NR_130894 ENSG00000237328 RAI1-AS1 - RAI1 antisense RNA 1 ncRNA 483-175 chr3 119142938 119143273 + 2 NA intron (NM_152538, intron 1 of 8) L1M4|LINE|L1 2915 NM_152538 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 257-260 chr3 14006929 14007090 + 2 NA intron (NR_002223, intron 1 of 2) L1PA16|LINE|L1 69702 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 257-449 chrX 39283613 39283756 + 2 NA Intergenic L1MEd|LINE|L1 43678 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 170-67 chr2 17212065 17212221 + 2 NA Intergenic L1MA9|LINE|L1 306297 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 436-333 chr9 132043221 132043527 + 2 NA intron (NM_001253881, intron 2 of 6) L1ME3E|LINE|L1 36493 NM_001253882 9442 Hs.374262 NM_004269 ENSG00000160563 MED27 CRAP34|CRSP34|CRSP8|MED3|TRAP37 mediator complex subunit 27 protein-coding 474-308 chr9 96791382 96791718 + 2 NA Intergenic L1PREC2|LINE|L1 -13421 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 772-39 chr4 46564396 46564957 + 2 NA Intergenic AluSz6|SINE|Alu -174548 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 426-153 chr2 193653198 193653514 + 2 NA Intergenic Intergenic -690913 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 137-74 chr5 117292216 117292330 + 2 NA Intergenic Intergenic -123239 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 419-169 chr22 16940461 16940712 + 2 NA Intergenic HERVL-int|LTR|ERVL 67636 NM_001037814 128954 Hs.434113 NM_001037814 ENSG00000215568 GAB4 - GRB2 associated binding protein family member 4 protein-coding 349-361 chr4 26449756 26449953 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger 40630 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 347-47 chr10 42999225 42999472 + 2 NA Intergenic Intergenic 1785 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 558-98 chr2 52994960 52995351 + 2 NA Intergenic Intergenic -292540 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 232-246 chr3 90604985 90605175 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1497459 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 263-210 chr2 117057464 117057672 + 2 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -757123 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 292-212 chr2 51439209 51439465 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 406736 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 416-161 chr2 28481142 28481516 + 2 NA Intergenic AluJo|SINE|Alu -14731 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 186-109 chr3 82049617 82049763 + 2 NA intron (NR_147146, intron 1 of 8) L2c|LINE|L2 63548 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 198-234 chr7 77230281 77230408 + 2 NA intron (NM_020879, intron 2 of 18) L1M4b|LINE|L1 -30525 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 170-72 chr2 81509022 81509127 + 2 NA Intergenic L1M5|LINE|L1 -42128 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 239-97 chr14 48807637 48807839 + 2 NA Intergenic Intergenic 778642 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 491-217 chr5 114802867 114803334 + 2 NA Intergenic Intergenic -29687 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 313-266 chr2 102939815 102939993 + 2 NA Intergenic Intergenic -44182 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 276-383 chr5 140751076 140751292 + 2 NA Intergenic L1PREC2|LINE|L1 25025 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 209-155 chr2 100401571 100401729 + 2 NA intron (NM_004854, intron 4 of 6) intron (NM_004854, intron 4 of 6) 16018 NM_004854 9486 Hs.516370 NM_004854 ENSG00000115526 CHST10 HNK-1ST|HNK1ST carbohydrate sulfotransferase 10 protein-coding 380-151 chr17 54263282 54263474 + 2 NA Intergenic L1MC4a|LINE|L1 440451 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 446-56 chr10 121367289 121367578 + 2 NA Intergenic Intergenic 163881 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 524-66 chr14 70799660 70800104 + 2 NA intron (NM_033141, intron 2 of 12) intron (NM_033141, intron 2 of 12) 9289 NM_001284230 4293 Hs.445496 NM_033141 ENSG00000006432 MAP3K9 MEKK9|MLK1|PRKE1 mitogen-activated protein kinase kinase kinase 9 protein-coding 622-129 chr7 53834794 53835254 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -23093 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 558-150 chr4 37151552 37152067 + 2 NA Intergenic L1ME3Cz|LINE|L1 90182 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 435-176 chr4 154380508 154380875 + 2 NA intron (NM_001358235, intron 1 of 19) L4_C_Mam|LINE|RTE-X 111108 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 536-77 chr14 85106102 85106598 + 2 NA Intergenic Intergenic -165582 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 343-20 chr1 95622153 95622412 + 2 NA Intergenic Intergenic 112166 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 307-420 chr6 44940449 44940647 + 2 NA intron (NM_181356, intron 11 of 12) L1PB4|LINE|L1 257222 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 483-265 chr8 82759004 82759409 + 2 NA Intergenic Intergenic -152898 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 203-244 chr9 27837750 27837923 + 2 NA Intergenic Intergenic -263970 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 174-129 chr6 100293526 100293632 + 2 NA Intergenic Intergenic 170096 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 289-241 chr2 129565066 129565262 + 2 NA Intergenic L1MEg|LINE|L1 -291273 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 296-497 chr9 80936695 80936937 + 2 NA Intergenic Intergenic 752719 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 408-261 chr5 25531252 25531558 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 340452 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 338-29 chr1 189381764 189382020 + 2 NA Intergenic Intergenic 1094118 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 141-8 chr10 38132825 38132940 + 2 NA intron (NM_001324258, intron 6 of 6) L1MB4|LINE|L1 38545 NM_001324250 7587 Hs.292575 NM_003421 ENSG00000075407 ZNF37A KOX21|ZNF37 zinc finger protein 37A protein-coding 398-216 chr3 122660083 122660400 + 2 NA Intergenic L1ME4c|LINE|L1 -20598 NM_017554 54625 Hs.518203 NM_017554 ENSG00000173193 PARP14 ARTD8|BAL2|PARP-14|pART8 poly(ADP-ribose) polymerase family member 14 protein-coding 406-172 chr20 58168120 58168410 + 2 NA Intergenic LTR52|LTR|ERVL 17363 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 342-376 chr4 172969022 172969214 + 2 NA intron (NM_001034845, intron 10 of 12) L1M8|LINE|L1 -199693 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 318-107 chr11 74148167 74148369 + 2 NA intron (NM_001286577, intron 3 of 32) Charlie8|DNA|hAT-Charlie 22734 NM_015531 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 domain containing 3 centriole elongation regulator protein-coding 407-298 chr7 56461418 56461667 + 2 NA Intergenic AluY|SINE|Alu -13167 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 581-110 chr4 13083165 13083596 + 2 NA Intergenic Intergenic 400960 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 200-259 chr7 89516460 89516591 + 2 NA Intergenic Intergenic -602875 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 385-126 chr16 74151265 74151530 + 2 NA Intergenic L1ME3E|LINE|L1 64124 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 123-54 chr7 3019673 3019746 + 2 NA intron (NM_001324281, intron 1 of 25) intron (NM_001324281, intron 1 of 25) 24158 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 435-201 chr5 106782245 106782518 + 2 NA Intergenic L1MA3|LINE|L1 228633 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 415-247 chr7 3337139 3337383 + 2 NA intron (NM_152744, intron 1 of 44) L1MD1|LINE|L1 36009 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 500-291 chr8 68106819 68107155 + 2 NA TTS (NM_025170) TTS (NM_025170) 154941 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 571-120 chr4 16380554 16380945 + 2 NA Intergenic Intergenic 154086 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 339-365 chr3 83337210 83337435 + 2 NA Intergenic Intergenic 1351180 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 311-363 chr4 12836697 12836947 + 2 NA Intergenic Intergenic 613371 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 264-434 chr8 137591626 137591821 + 2 NA Intergenic Intergenic -178135 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 243-36 chr10 35256927 35257094 + 2 NA intron (NM_181698, intron 3 of 11) L1M4c|LINE|L1 9985 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 460-196 chr3 74598432 74598705 + 2 NA Intergenic Intergenic -77428 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 354-138 chr14 61044341 61044552 + 2 NA intron (NR_033344, intron 10 of 16) intron (NR_033344, intron 10 of 16) -62756 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 349-356 chr3 190764900 190765208 + 2 NA Intergenic Intergenic 97640 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 137-41 chr2 18674907 18675025 + 2 NA Intergenic L1PB3|LINE|L1 -85386 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 299-189 chr19 44133572 44133822 + 2 NA 3' UTR (NM_001321685, exon 6 of 6) 3' UTR (NM_001321685, exon 6 of 6) -7857 NM_001144824 10780 Hs.235992 NM_006630 ENSG00000263002 ZNF234 HZF4|ZNF269 zinc finger protein 234 protein-coding 336-106 chr11 87660110 87660432 + 2 NA Intergenic Intergenic 59140 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 398-186 chr20 21426298 21426579 + 2 NA Intergenic Intergenic -28912 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 669-62 chr20 21116515 21117012 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -9212 NM_001276389 55857 Hs.187635 NM_018474 ENSG00000088970 KIZ C20orf19|HT013|Kizuna|NCRNA00153|PLK1S1|RP69 kizuna centrosomal protein protein-coding 229-18 chr1 194752632 194752780 + 2 NA Intergenic Intergenic 1336009 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 631-47 chr16 55516091 55516561 + 2 NA intron (NM_017839, intron 1 of 13) AluJo|SINE|Alu 7254 NM_017839 54947 Hs.460857 NM_017839 ENSG00000087253 LPCAT2 AGPAT11|AYTL1|LysoPAFAT lysophosphatidylcholine acyltransferase 2 protein-coding 274-307 chr5 42321426 42321679 + 2 NA Intergenic Intergenic -101887 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 354-110 chr12 90426969 90427292 + 2 NA Intergenic L2c|LINE|L2 133812 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 442-126 chr2 34708469 34708842 + 2 NA intron (NR_126404, intron 1 of 2) intron (NR_126404, intron 1 of 2) 31098 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 350-104 chr12 93205368 93205699 + 2 NA intron (NR_040096, intron 3 of 4) intron (NR_040096, intron 3 of 4) 31167 NR_120492 102724933 Hs.663947 NR_120492 ENSG00000258171 LINC02412 - long intergenic non-protein coding RNA 2412 ncRNA 417-297 chr8 141485100 141485360 + 2 NA intron (NR_102364, intron 6 of 26) L1ME2|LINE|L1 21999 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 318-50 chr10 4428231 4428399 + 2 NA Intergenic Intergenic 21846 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 206-14 chr1 150811380 150811483 + 2 NA 3' UTR (NM_001350226, exon 22 of 22) 3' UTR (NM_001350226, exon 22 of 22) -3171 NM_000396 1513 Hs.632466 NM_000396 ENSG00000143387 CTSK CTS02|CTSO|CTSO1|CTSO2|PKND|PYCD cathepsin K protein-coding 234-77 chr12 69076192 69076413 + 2 NA Intergenic L1MA9|LINE|L1 -113062 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 434-168 chr22 22340822 22341241 + 2 NA Intergenic Intergenic 42933 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 328-211 chr17 61829097 61829386 + 2 NA intron (NM_032043, intron 6 of 19) L1MEc|LINE|L1 34318 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 448-23 chr1 225248601 225248987 + 2 NA intron (NM_001367479, intron 43 of 85) ERVL-B4-int|LTR|ERVL 179244 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 409-88 chr15 26666525 26666887 + 2 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) -37616 NM_001191321 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 139-62 chr4 67099505 67099580 + 2 NA Intergenic Intergenic 322458 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 530-116 chr2 28497488 28497879 + 2 NA intron (NM_001170585, intron 1 of 56) MER89|LTR|ERV1 1612 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 173-73 chr2 153560556 153560662 + 2 NA Intergenic L1M4|LINE|L1 -81847 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 565-3 chr1 44406362 44406748 + 2 NA intron (NM_018150, intron 1 of 14) CpG 1300 NM_018150 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 588-135 chr6 62762036 62762503 + 2 NA Intergenic Intergenic -476042 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 122-56 chr8 117771409 117771474 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 149472 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 178-122 chr6 84200544 84200687 + 2 NA intron (NM_001286206, intron 9 of 26) intron (NM_001286206, intron 9 of 26) 27028 NM_001286206 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 430-211 chr4 58182933 58183214 + 2 NA Intergenic Intergenic 353255 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 386-387 chrX 43587195 43587448 + 2 NA Intergenic Intergenic -67586 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 379-237 chr4 71039331 71039574 + 2 NA Intergenic L1MC1|LINE|L1 45803 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 343-16 chr1 91061355 91061553 + 2 NA Intergenic L2c|LINE|L2 -39199 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 294-494 chr9 37569190 37569381 + 2 NA intron (NM_012166, intron 1 of 10) L1ME3|LINE|L1 7095 NM_012166 26267 Hs.709527 NM_012166 ENSG00000147912 FBXO10 FBX10|PRMT11 F-box protein 10 protein-coding 292-186 chr18 73977210 73977455 + 2 NA Intergenic Intergenic 170502 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 406-68 chr13 96616144 96616411 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 189048 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 201-261 chr9 104760551 104760696 + 2 NA TTS (NM_001329570) TTS (NM_001329570) -3118 NR_130759 55335 Hs.429294 NM_018376 ENSG00000165028 NIPSNAP3B FP944|NIPSNAP3|SNAP1 nipsnap homolog 3B protein-coding 354-298 chr3 79567065 79567249 + 2 NA intron (NM_002941, intron 2 of 30) L1PA13|LINE|L1 59270 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 285-371 chr6 113395014 113395220 + 2 NA Intergenic MIR|SINE|MIR 38330 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 295-194 chr2 6298668 6298831 + 2 NA Intergenic Intergenic 76673 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 253-246 chr3 7020512 7020698 + 2 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -126588 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 273-54 chr10 55490798 55491040 + 2 NA intron (NM_001354404, intron 2 of 34) L1MEc|LINE|L1 -108123 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 734-74 chr8 77877153 77877814 + 2 NA Intergenic Intergenic 426786 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 337-549 chr8 115932357 115932668 + 2 NA Intergenic Intergenic -263537 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 369-292 chr4 58105866 58106079 + 2 NA Intergenic LTR86C|LTR|ERVL 430356 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 650-83 chr4 36646954 36647410 + 2 NA Intergenic Intergenic -5282 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 390-369 chr8 31388338 31388662 + 2 NA Intergenic Intergenic -251252 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 488-253 chr7 22861059 22861492 + 2 NA non-coding (NR_146320, exon 5 of 5) non-coding (NR_146320, exon 5 of 5) 4662 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 556-210 chr7 89650758 89651239 + 2 NA Intergenic Intergenic -468402 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 200-136 chr2 100882124 100882272 + 2 NA intron (NM_002518, intron 1 of 20) L1MD2|LINE|L1 62059 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 405-348 chr9 96035102 96035459 + 2 NA Intergenic MER52C|LTR|ERV1 -13469 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 228-221 chr3 119764140 119764331 + 2 NA intron (NM_033364, intron 17 of 17) intron (NM_033364, intron 17 of 17) -16249 NM_003889 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 414-209 chr3 71621859 71622226 + 2 NA Intergenic L2c|LINE|L2 -38053 NM_001244810 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 381-184 chr2 35026358 35026620 + 2 NA Intergenic Intergenic 348932 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 513-69 chr13 111923561 111923909 + 2 NA Intergenic Intergenic 30239 NR_120401 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 329-334 chr21 18027099 18027359 + 2 NA intron (NM_001204177, intron 1 of 4) AluJr|SINE|Alu 109889 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 503-60 chr11 96921277 96921655 + 2 NA Intergenic Intergenic 413041 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 382-322 chr5 27674032 27674251 + 2 NA Intergenic Intergenic 201849 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 334-54 chr10 49318119 49318382 + 2 NA intron (NM_001135196, intron 2 of 2) intron (NM_001135196, intron 2 of 2) 19080 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 353-322 chr3 50854833 50855039 + 2 NA intron (NM_004947, intron 3 of 52) L1PA17|LINE|L1 179856 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 320-494 chr6 122571321 122571564 + 2 NA intron (NM_001270393, intron 3 of 7) L1PB2|LINE|L1 -38790 NM_032471 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 516-239 chr7 96436205 96436551 + 2 NA Intergenic Intergenic 67145 NR_163949 280-229 chr20 20220755 20220916 + 2 NA intron (NM_015585, intron 17 of 26) intron (NM_015585, intron 17 of 26) -147269 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 199-2 chr1 34500415 34500578 + 2 NA Intergenic Intergenic 169198 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 329-465 chr5 104591531 104591709 + 2 NA Intergenic HERVFH19-int|LTR|ERV1 -507854 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 366-293 chr3 189863669 189864018 + 2 NA intron (NM_003722, intron 4 of 13) intron (NM_003722, intron 4 of 13) 33921 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 269-371 chr7 8508637 8508841 + 2 NA intron (NM_152745, intron 2 of 2) L2a|LINE|L2 75130 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 274-412 chr9 37196831 37197020 + 2 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 76327 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 473-298 chr9 101858536 101858914 + 2 NA Intergenic Intergenic -120145 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 547-120 chr20 22085021 22085462 + 2 NA Intergenic Intergenic 31151 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 381-180 chr2 7437191 7437499 + 2 NA intron (NR_038432, intron 4 of 5) MER58A|DNA|hAT-Charlie 16084 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 317-44 chr10 25893203 25893407 + 2 NA Intergenic Intergenic 40405 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 524-36 chr10 122967405 122967864 + 2 NA Intergenic L1PA13|LINE|L1 -12767 NM_001363531 118672 Hs.281004 NM_153336 ENSG00000179988 PSTK C10orf89 phosphoseryl-tRNA kinase protein-coding 625-129 chr9 106188812 106189155 + 2 NA Intergenic L1PA16|LINE|L1 -411945 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 311-407 chr5 57978353 57978641 + 2 NA Intergenic MIRb|SINE|MIR -79335 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 288-256 chr3 34745414 34745595 + 2 NA Intergenic Intergenic 648519 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 585-154 chr7 108547511 108547848 + 2 NA Intergenic Intergenic -19501 NM_001256011 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 273-39 chr10 14375275 14375500 + 2 NA Intergenic Intergenic 7890 NR_036181 100422843 NR_036181 ENSG00000266321 MIR4293 - microRNA 4293 ncRNA 372-511 chr9 21871203 21871474 + 2 NA Intergenic L2b|LINE|L2 68702 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 361-269 chr22 48131600 48131808 + 2 NA Intergenic L2|LINE|L2 -142660 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 270-78 chr12 24215503 24215724 + 2 NA intron (NM_001261414, intron 4 of 16) L1MB7|LINE|L1 3192 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 522-37 chr11 20797612 20798009 + 2 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 128224 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 275-262 chr4 52917224 52917410 + 2 NA intron (NM_152540, intron 6 of 8) MIR|SINE|MIR 55000 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 632-40 chr17 53197165 53197759 + 2 NA Intergenic L1PA16|LINE|L1 211957 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 432-41 chr10 125421135 125421562 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -153023 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 167-65 chr2 172198569 172198675 + 2 NA Intergenic Intergenic 95616 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 262-12 chr1 76078356 76078566 + 2 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 3715 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 468-264 chr5 127298640 127299020 + 2 NA intron (NM_001308121, intron 1 of 13) intron (NM_001308121, intron 1 of 13) 8034 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 373-204 chr2 124561086 124561391 + 2 NA intron (NM_130773, intron 10 of 23) intron (NM_130773, intron 10 of 23) 535951 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 216-147 chr18 56978692 56978899 + 2 NA intron (NM_015285, intron 26 of 27) MER5B|DNA|hAT-Charlie 93324 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 821-32 chr20 54569737 54570225 + 2 NA intron (NM_018431, intron 2 of 7) intron (NM_018431, intron 2 of 7) 94388 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 289-50 chr10 27939083 27939307 + 2 NA intron (NM_001290021, intron 7 of 13) intron (NM_001290021, intron 7 of 13) 42676 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 314-58 chr10 25899913 25900218 + 2 NA Intergenic L1MC4|LINE|L1 33645 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 356-246 chr2 79171204 79171394 + 2 NA Intergenic L1MA4|LINE|L1 -11546 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 338-308 chr21 26521411 26521732 + 2 NA intron (NR_135515, intron 2 of 3) intron (NR_135515, intron 2 of 3) 51715 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 318-201 chr16 77354836 77355147 + 2 NA intron (NM_199355, intron 9 of 22) intron (NM_199355, intron 9 of 22) 80043 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 114-30 chr2 143855723 143855818 + 2 NA Intergenic Intergenic -81297 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 308-98 chr12 13937935 13938216 + 2 NA intron (NM_000834, intron 1 of 12) L1ME2|LINE|L1 42281 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 574-111 chr3 120065036 120065604 + 2 NA intron (NM_002093, intron 1 of 11) L1MB5|LINE|L1 19328 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 196-68 chr14 44545609 44545766 + 2 NA Intergenic LTR78|LTR|ERV1 38278 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 219-91 chr13 80505031 80505230 + 2 NA Intergenic L1PA16|LINE|L1 -164004 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 304-520 chr8 97727698 97727956 + 2 NA 3' UTR (NM_001363138, exon 11 of 11) 3' UTR (NM_001363138, exon 11 of 11) -47961 NM_018407 55353 Hs.492314 NM_018407 ENSG00000104341 LAPTM4B LAPTM4beta|LC27 lysosomal protein transmembrane 4 beta protein-coding 235-303 chr6 51611774 51611960 + 2 NA Intergenic Intergenic -10003 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 359-373 chr4 101002843 101003187 + 2 NA Intergenic LTR40a|LTR|ERVL 237857 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 498-119 chr2 43352895 43353250 + 2 NA intron (NM_001083953, intron 29 of 37) L1MA9|LINE|L1 125861 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 803-37 chr4 97972519 97973072 + 2 NA intron (NM_174952, intron 6 of 10) THE1B|LTR|ERVL-MaLR 170681 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 383-167 chr18 67395429 67395655 + 2 NA Intergenic L1MB1|LINE|L1 -121004 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 197-101 chr2 126384572 126384682 + 2 NA Intergenic L1MD2|LINE|L1 -266642 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 216-73 chr12 33215334 33215494 + 2 NA Intergenic Intergenic 224405 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 350-220 chr2 55975132 55975347 + 2 NA intron (NR_126406, intron 2 of 2) ERVL-B4-int|LTR|ERVL 7837 NR_029630 406999 NR_029630 ENSG00000207548 MIR217 MIRN217|mir-217 microRNA 217 ncRNA 212-28 chr10 14418416 14418609 + 2 NA Intergenic MER41A|LTR|ERV1 -18064 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 394-326 chr8 76245004 76245235 + 2 NA Intergenic Intergenic -161535 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 152-44 chr2 22718248 22718341 + 2 NA Intergenic L1MCb|LINE|L1 181815 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 460-198 chr3 77960864 77961212 + 2 NA Intergenic L1ME3|LINE|L1 87925 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 363-210 chr2 63274146 63274379 + 2 NA intron (NR_148704, intron 14 of 18) L1M2|LINE|L1 -154720 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 697-27 chr15 54519634 54520158 + 2 NA intron (NM_001329919, intron 23 of 31) intron (NM_001329919, intron 23 of 31) 507248 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 323-154 chr14 86992033 86992327 + 2 NA Intergenic L1MC1|LINE|L1 86402 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 330-448 chr5 163927539 163927764 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 422032 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 390-255 chr3 184091780 184092062 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -5143 NM_198313 285242 Hs.449179 NM_182589 ENSG00000186038 HTR3E 5-HT3-E|5-HT3E|5-HT3c1 5-hydroxytryptamine receptor 3E protein-coding 403-287 chr7 85640857 85641098 + 2 NA Intergenic Intergenic 219855 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 322-507 chr7 110622982 110623255 + 2 NA Intergenic Intergenic -467888 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 746-6 chr1 169284452 169285068 + 2 NA intron (NR_104229, intron 7 of 12) L1P2|LINE|L1 83037 NM_013330 29922 Hs.706952 NM_013330 ENSG00000143156 NME7 CFAP67|MN23H7|NDK 7|NDK7|nm23-H7 NME/NM23 family member 7 protein-coding 394-117 chr15 86588025 86588244 + 2 NA intron (NM_152336, intron 22 of 24) intron (NM_152336, intron 22 of 24) -271166 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 190-4 chr1 106914013 106914193 + 2 NA Intergenic Intergenic 95864 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 325-275 chr2 116587343 116587562 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -1227239 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 368-340 chr4 142842625 142842912 + 2 NA intron (NM_001331040, intron 1 of 25) L1MCa|LINE|L1 3767 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 454-133 chr19 55973998 55974385 + 2 NA intron (NM_001317000, intron 7 of 9) LTR19B|LTR|ERV1 -25535 NM_153447 126206 Hs.356872 NM_153447 ENSG00000171487 NLRP5 CLR19.8|MATER|NALP5|PAN11|PYPAF8 NLR family pyrin domain containing 5 protein-coding 230-380 chr8 117087251 117087454 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -47643 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 264-446 chr9 106280562 106280800 + 2 NA Intergenic L1M3|LINE|L1 -320247 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 550-91 chr18 4467812 4468177 + 2 NA Intergenic Intergenic -12687 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 397-359 chr9 102230823 102231100 + 2 NA Intergenic Intergenic -288676 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 120-42 chr5 163766526 163766620 + 2 NA Intergenic MER66B|LTR|ERV1 260954 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 213-79 chr13 59082563 59082713 + 2 NA Intergenic L2c|LINE|L2 -849521 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 284-295 chr4 115727983 115728125 + 2 NA Intergenic Intergenic -571671 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 285-379 chr7 12830418 12830606 + 2 NA Intergenic Intergenic 142879 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 236-135 chr16 76861032 76861212 + 2 NA Intergenic L1PB3|LINE|L1 -7814 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 330-475 chr6 165003495 165003696 + 2 NA Intergenic Intergenic -181532 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 448-143 chr21 29403730 29404129 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 31428 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 453-146 chr21 15282426 15282834 + 2 NA Intergenic Intergenic -217630 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 355-372 chr4 97573941 97574247 + 2 NA intron (NM_174952, intron 10 of 10) MLT1D|LTR|ERVL-MaLR 207168 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 334-159 chr14 82332697 82332983 + 2 NA Intergenic Intergenic -309792 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 173-135 chr8 31814526 31814646 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 174834 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 486-288 chr8 21164827 21165306 + 2 NA Intergenic L2a|LINE|L2 -133173 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 234-74 chr12 34493568 34493759 + 2 NA Intergenic ALR/Alpha|Satellite|centr 471167 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 395-357 chr9 92475262 92475649 + 2 NA intron (NM_017680, intron 1 of 8) L1ME4a|LINE|L1 7051 NM_001193335 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 384-236 chr3 120769862 120770136 + 2 NA intron (NM_005513, intron 2 of 4) intron (NM_005513, intron 2 of 4) 27255 NM_005513 2960 Hs.445272 NM_005513 ENSG00000153767 GTF2E1 FE|TF2E1|TFIIE-A general transcription factor IIE subunit 1 protein-coding 318-595 chrX 126431208 126431462 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 121479 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 459-65 chr12 57365308 57365638 + 2 NA intron (NM_001351217, intron 1 of 21) L1ME1|LINE|L1 -23017 NM_001351214 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 672-56 chr2 84253114 84253705 + 2 NA Intergenic Intergenic -37273 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 288-300 chr4 69074298 69074539 + 2 NA intron (NM_001349568, intron 1 of 6) AluJb|SINE|Alu -22056 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 524-165 chr4 36032644 36032992 + 2 NA intron (NR_146893, intron 35 of 36) L1PREC2|LINE|L1 211121 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 420-62 chr12 23704769 23705025 + 2 NA intron (NM_152989, intron 9 of 17) intron (NM_152989, intron 9 of 17) -120311 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 215-33 chr10 53782420 53782590 + 2 NA Intergenic Intergenic -703725 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 248-91 chr12 101335161 101335354 + 2 NA intron (NM_014503, intron 29 of 61) intron (NM_014503, intron 29 of 61) 55152 NM_014503 27340 Hs.295732 NM_014503 ENSG00000120800 UTP20 1A6/DRIM|DRIM UTP20 small subunit processome component protein-coding 358-211 chr2 74676347 74676645 + 2 NA intron (NM_001271661, intron 8 of 9) L2|LINE|L2 22249 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 442-135 chr2 99754072 99754430 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -264234 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 558-106 chr2 172344291 172344760 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -82811 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 415-254 chr7 41453156 41453528 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -240577 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 472-254 chr5 110644756 110645081 + 2 NA intron (NM_001039763, intron 2 of 13) L1M3|LINE|L1 81753 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 300-272 chr3 74397860 74398049 + 2 NA intron (NM_020872, intron 4 of 21) Tigger1|DNA|TcMar-Tigger 123186 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 472-126 chr17 79562851 79563306 + 2 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) -46930 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 322-81 chr11 22974927 22975174 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -114576 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 600-38 chr15 57508522 57508919 + 2 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -83184 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 396-215 chr3 44717112 44717372 + 2 NA intron (NM_033210, intron 2 of 3) L1ME4a|LINE|L1 4582 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 367-228 chr2 171664669 171665026 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -22622 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 409-283 chr7 42707478 42707750 + 2 NA Intergenic L1ME3F|LINE|L1 -1167 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 456-103 chr15 49764889 49765331 + 2 NA Intergenic L1MB1|LINE|L1 144062 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 372-429 chr6 50302577 50302930 + 2 NA Intergenic L1PA15|LINE|L1 -252824 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 362-125 chr12 124091392 124091617 + 2 NA intron (NM_001347902, intron 2 of 4) MER33|DNA|hAT-Charlie 118289 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 352-494 chr7 45620585 45620799 + 2 NA intron (NM_001281768, intron 4 of 9) L1M4|LINE|L1 46324 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 226-248 chr4 30329872 30330064 + 2 NA Intergenic Intergenic -390401 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 358-478 chr8 86552433 86552653 + 2 NA intron (NM_003909, intron 14 of 16) intron (NM_003909, intron 14 of 16) 38108 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 576-50 chr14 72603196 72603541 + 2 NA Intergenic Intergenic 86548 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 357-223 chr2 170479639 170479880 + 2 NA intron (NM_001083615, intron 25 of 33) (AT)n|Simple_repeat|Simple_repeat -128816 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 496-294 chr8 127340078 127340478 + 2 NA intron (NR_117099, intron 3 of 3) L2a|LINE|L2 -60121 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 320-359 chr3 113174253 113174461 + 2 NA Intergenic MIRb|SINE|MIR -6626 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 321-482 chr5 171567107 171567374 + 2 NA Intergenic L1MD|LINE|L1 147593 NM_003862 8817 Hs.87191 NM_003862 ENSG00000156427 FGF18 FGF-18|ZFGF5 fibroblast growth factor 18 protein-coding 341-454 chr5 165002898 165003149 + 2 NA Intergenic L1ME3B|LINE|L1 532744 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 247-214 chr2 126126950 126127132 + 2 NA Intergenic Intergenic -9056 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 179-18 chr12 65410067 65410232 + 2 NA intron (NM_001031679, intron 5 of 6) L1M5|LINE|L1 131162 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 550-147 chr3 68657340 68657859 + 2 NA Intergenic MIR|SINE|MIR 156962 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 192-138 chr4 4964968 4965140 + 2 NA intron (NR_125893, intron 2 of 2) L1ME2z|LINE|L1 44246 NR_125893 101928306 Hs.543743 NR_125893 LOC101928306 - uncharacterized LOC101928306 ncRNA 236-175 chr2 81864940 81865095 + 2 NA Intergenic Intergenic -398071 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 191-181 chr5 163182580 163182729 + 2 NA Intergenic Intergenic -254917 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 310-326 chr3 62391941 62392120 + 2 NA Intergenic Intergenic -18480 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 305-224 chr19 3796229 3796472 + 2 NA intron (NM_002378, intron 1 of 13) HAL1|LINE|L1 5449 NM_002378 4145 Hs.631845 NM_002378 ENSG00000007264 MATK CHK|CTK|HHYLTK|HYL|HYLTK|Lsk megakaryocyte-associated tyrosine kinase protein-coding 333-266 chr2 125881363 125881598 + 2 NA Intergenic Intergenic 236505 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 382-63 chr11 79531645 79531874 + 2 NA Intergenic Intergenic -90729 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 506-113 chr18 4004117 4004520 + 2 NA intron (NR_102696, intron 4 of 4) intron (NR_102696, intron 4 of 4) 41965 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 219-164 chr2 44795141 44795345 + 2 NA Intergenic L1MEj|LINE|L1 143645 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 344-64 chr10 121306788 121306998 + 2 NA Intergenic Intergenic 224421 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 218-193 chr20 56299225 56299387 + 2 NA Intergenic L1ME2z|LINE|L1 50574 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 200-264 chr8 29373185 29373380 + 2 NA Intergenic Intergenic -22598 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 324-195 chr16 8232075 8232259 + 2 NA Intergenic Intergenic 357671 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 527-167 chr3 10417608 10417939 + 2 NA intron (NM_001001331, intron 2 of 22) intron (NM_001001331, intron 2 of 22) -23211 NR_030614 100126334 NR_030614 ENSG00000216135 MIR885 MIRN885|hsa-mir-885|mir-885 microRNA 885 ncRNA 281-9 chr1 92025054 92025280 + 2 NA Intergenic Intergenic -4818 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 363-366 chr5 100258004 100258304 + 2 NA Intergenic Intergenic 130100 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 204-64 chr12 100712688 100712809 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -82028 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 160-122 chr8 109995471 109995611 + 2 NA Intergenic Intergenic -19770 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 313-108 chr12 38039250 38039412 + 2 NA Intergenic ALR/Alpha|Satellite|centr -277443 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 253-200 chr2 147788364 147788550 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -56060 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 256-164 chr17 54119175 54119423 + 2 NA Intergenic L1ME1|LINE|L1 296372 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 328-469 chr5 123163303 123163468 + 2 NA intron (NM_001136239, intron 5 of 7) intron (NM_001136239, intron 5 of 7) -73069 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 264-127 chr14 51819957 51820148 + 2 NA Intergenic Intergenic -40560 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 152-100 chr9 95614706 95614853 + 2 NA Intergenic L1MA8|LINE|L1 -97722 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 343-538 chr8 79017431 79017728 + 2 NA Intergenic L1MA2|LINE|L1 180050 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 307-428 chr6 76083707 76083938 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -11144 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 327-75 chr11 19410452 19410694 + 2 NA intron (NM_001111018, intron 1 of 37) MIR|SINE|MIR 59849 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 439-283 chr8 83951721 83952101 + 2 NA Intergenic Intergenic -230876 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 215-24 chr10 18527898 18528077 + 2 NA intron (NM_201593, intron 10 of 13) MIRb|SINE|MIR 123600 NM_001351115 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 258-424 chr9 69939327 69939494 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -104171 NM_001347990 256691 Hs.547172 NM_153267 ENSG00000165072 MAMDC2 - MAM domain containing 2 protein-coding 254-223 chr20 42878203 42878449 + 2 NA intron (NM_133170, intron 2 of 31) L1ME4a|LINE|L1 -90417 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 580-71 chr19 30830832 30831285 + 2 NA Intergenic Intergenic -336452 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 233-143 chr18 67302366 67302529 + 2 NA Intergenic Intergenic -214099 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 191-4 chr1 74213245 74213424 + 2 NA intron (NM_001112808, intron 3 of 26) LTR85a|LTR|Gypsy? 15122 NM_001199327 100526835 Hs.480085 NM_001112808 ENSG00000259030 FPGT-TNNI3K CARK|TNNI3K FPGT-TNNI3K readthrough protein-coding 330-47 chr10 6964757 6964978 + 2 NA Intergenic Intergenic 185269 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 650-56 chr2 100318869 100319250 + 2 NA intron (NM_198461, intron 1 of 11) AluSc5|SINE|Alu 3674 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 366-376 chr6 81140425 81140759 + 2 NA Intergenic L1PA14|LINE|L1 612089 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 322-228 chr19 53167162 53167361 + 2 NA intron (NM_001353458, intron 4 of 4) AluSp|SINE|Alu -8201 NM_001172674 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 391-360 chr8 110963315 110963668 + 2 NA intron (NR_125417, intron 5 of 5) MSTA|LTR|ERVL-MaLR 63942 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 425-134 chr2 36175221 36175520 + 2 NA Intergenic Intergenic 180200 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 301-412 chr7 9977492 9977687 + 2 NA Intergenic Intergenic 343319 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 266-200 chr2 166216887 166217147 + 2 NA intron (NM_001365536, intron 24 of 26) L1MA8|LINE|L1 -67856 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 233-279 chr4 158175752 158175914 + 2 NA intron (NR_147407, intron 2 of 5) intron (NR_147407, intron 2 of 5) -2808 NM_001128424 51313 Hs.567498 NM_016613 ENSG00000164125 GASK1B AD021|AD036|C4orf18|ENED|FAM198B golgi associated kinase 1B protein-coding 271-370 chr6 27417210 27417431 + 2 NA intron (NR_144688, intron 5 of 8) intron (NR_144688, intron 5 of 8) 28602 NM_001322289 346157 Hs.651176 NM_001013719 ENSG00000124613 ZNF391 dJ153G14.3 zinc finger protein 391 protein-coding 573-107 chr21 24417896 24418255 + 2 NA Intergenic MER51-int|LTR|ERV1 -10665 NR_135519 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 563-193 chr9 38222050 38222373 + 2 NA Intergenic L1MA3|LINE|L1 -152984 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 293-158 chr17 73923035 73923190 + 2 NA Intergenic L1MEd|LINE|L1 -94575 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 433-103 chr16 80835007 80835426 + 2 NA intron (NR_131948, intron 2 of 2) intron (NR_131948, intron 2 of 2) -30618 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 553-128 chr2 138402001 138402417 + 2 NA Intergenic L1MA3|LINE|L1 -99561 NM_001001664 339745 Hs.333297 NM_001001664 ENSG00000144228 SPOPL BTBD33 speckle type BTB/POZ protein like protein-coding 268-226 chr20 51078119 51078328 + 2 NA Intergenic Intergenic -55116 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 193-17 chr1 178109000 178109160 + 2 NA intron (NM_170692, intron 1 of 17) Charlie13a|DNA|hAT-Charlie 14976 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 164-49 chr18 66532558 66532673 + 2 NA intron (NM_001271028, intron 8 of 9) MER67C|LTR|ERV1 71475 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 399-243 chr5 31480593 31480910 + 2 NA intron (NM_013235, intron 15 of 34) L2a|LINE|L2 51342 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 341-368 chr4 30426399 30426603 + 2 NA Intergenic Intergenic -293868 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 497-143 chr2 199211188 199211576 + 2 NA Intergenic Intergenic 246557 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 194-117 chr3 24004689 24004864 + 2 NA Intergenic L2c|LINE|L2 58655 NM_001145425 9975 Hs.37288 NM_005126 ENSG00000174738 NR1D2 BD73|EAR-1R|REVERBB|REVERBbeta|RVR nuclear receptor subfamily 1 group D member 2 protein-coding 205-14 chr1 72706724 72706869 + 2 NA Intergenic Intergenic -424257 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 344-398 chr5 127722858 127723056 + 2 NA intron (NM_001317938, intron 2 of 6) L1MA3|LINE|L1 19568 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 285-88 chr12 42294525 42294719 + 2 NA Intergenic L1MEg|LINE|L1 29237 NR_107005 102467003 NR_107005 ENSG00000278520 MIR7851 hsa-mir-7851 microRNA 7851 ncRNA 412-73 chr12 113006855 113007216 + 2 NA intron (NM_002535, intron 8 of 9) intron (NM_002535, intron 8 of 9) 28516 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 299-382 chr5 125103677 125103861 + 2 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 66938 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 295-257 chr20 43071184 43071371 + 2 NA intron (NM_133170, intron 1 of 31) MER5A|DNA|hAT-Charlie 102534 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 412-59 chr11 115808050 115808325 + 2 NA Intergenic Intergenic -47987 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 320-404 chr4 125622929 125623151 + 2 NA Intergenic Intergenic 115781 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 361-401 chr6 149098233 149098435 + 2 NA Intergenic L1PB4|LINE|L1 -65673 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 403-46 chr11 16254398 16254759 + 2 NA intron (NM_033326, intron 3 of 15) L1MC1|LINE|L1 101968 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 366-384 chr6 132223925 132224264 + 2 NA Intergenic L2a|LINE|L2 90116 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 399-324 chr9 70975255 70975613 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -106382 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 415-48 chr11 97358644 97359044 + 2 NA Intergenic MIRc|SINE|MIR 850419 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 272-458 chr8 121964635 121964830 + 2 NA Intergenic LTR16C|LTR|ERVL -323292 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 386-338 chr7 141131771 141132083 + 2 NA intron (NM_001195278, intron 1 of 3) L1ME2|LINE|L1 57863 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 514-150 chr2 88848838 88849201 + 2 NA Intergenic L1M5|LINE|L1 36649 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 231-12 chr1 90677633 90677795 + 2 NA Intergenic L1MEf|LINE|L1 19964 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 266-171 chr2 33169564 33169749 + 2 NA intron (NM_206943, intron 5 of 33) intron (NM_206943, intron 5 of 33) 35059 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 533-42 chr12 114458040 114458493 + 2 NA Intergenic Intergenic -49824 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 598-132 chr7 64991714 64992243 + 2 NA promoter-TSS (NM_015852) promoter-TSS (NM_015852) -942 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 353-151 chr14 86132308 86132524 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 197738 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 310-331 chr3 90417609 90417815 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1310091 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 355-79 chr11 14125601 14125875 + 2 NA intron (NM_006108, intron 5 of 15) MLT2B4|LTR|ERVL 163015 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 343-32 chr1 195634453 195634742 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 454118 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 375-423 chr8 130917868 130918072 + 2 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 122939 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 259-21 chr1 173042235 173042460 + 2 NA intron (NM_005092, intron 2 of 2) L2a|LINE|L2 8616 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 289-228 chr2 79555013 79555267 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 31957 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 324-454 chr6 38461649 38461921 + 2 NA intron (NM_001172418, intron 5 of 10) L1ME1|LINE|L1 -19811 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 345-459 chr6 39029069 39029375 + 2 NA intron (NM_001371, intron 91 of 91) intron (NM_001371, intron 91 of 91) -19559 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 235-151 chr19 36575618 36575816 + 2 NA intron (NR_110705, intron 2 of 4) intron (NR_110705, intron 2 of 4) -2425 NM_020951 57711 Hs.654960 NM_020951 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 204-296 chr8 130588931 130589055 + 2 NA Intergenic LTR40A1|LTR|ERVL -145319 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 331-91 chr11 64700498 64700682 + 2 NA intron (NM_015080, intron 2 of 22) L2c|LINE|L2 22598 NM_015080 9379 Hs.372938 NM_015080 ENSG00000110076 NRXN2 - neurexin 2 protein-coding 307-252 chr2 157722021 157722216 + 2 NA Intergenic L1MEc|LINE|L1 -93254 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 331-344 chr3 46510997 46511207 + 2 NA Intergenic L1PREC2|LINE|L1 13126 NM_031440 83597 Hs.196584 NM_031440 ENSG00000163825 RTP3 LTM1|TMEM7|Z3CXXC3 receptor transporter protein 3 protein-coding 205-49 chr11 22862376 22862535 + 2 NA Intergenic Intergenic -1981 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 280-322 chr5 45137994 45138267 + 2 NA Intergenic Intergenic 329183 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 363-10 chr1 87538390 87538590 + 2 NA Intergenic MSTC-int|LTR|ERVL-MaLR -166835 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 596-29 chr10 67064185 67064774 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 52213 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 611-144 chr7 136758070 136758663 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -110286 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 299-353 chr5 14260829 14261115 + 2 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 117630 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 547-193 chr5 145382840 145383361 + 2 NA Intergenic L1ME2|LINE|L1 452242 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 334-288 chr2 147642211 147642467 + 2 NA Intergenic Intergenic -202178 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 528-158 chr3 83615789 83616279 + 2 NA Intergenic Intergenic 1253541 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 514-184 chr3 40244892 40245349 + 2 NA intron (NM_001284424, intron 12 of 15) L4_A_Mam|LINE|RTE-X 64578 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 356-392 chr5 41456139 41456398 + 2 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 54333 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 349-223 chr19 11791490 11791816 + 2 NA Intergenic L1PB4|LINE|L1 -6870 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 401-101 chr15 57489115 57489462 + 2 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) -102616 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 324-425 chr5 39663224 39663484 + 2 NA Intergenic Intergenic 142923 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 337-412 chr4 137158449 137158717 + 2 NA intron (NR_149105, intron 1 of 3) AluJb|SINE|Alu -35173 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 313-283 chr2 169085652 169085823 + 2 NA intron (NM_001142271, intron 3 of 4) L1MA3|LINE|L1 4630 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 333-592 chr8 135435903 135436142 + 2 NA Intergenic Intergenic -21434 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 293-29 chr10 6624180 6624364 + 2 NA intron (NR_120634, intron 3 of 5) MER67A|LTR|ERV1 5556 NR_120634 101928150 Hs.576825 NR_120634 LINC02648 - long intergenic non-protein coding RNA 2648 ncRNA 339-459 chr5 109638622 109638846 + 2 NA Intergenic L1PREC2|LINE|L1 -50632 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 481-141 chr2 62040285 62040636 + 2 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) 134818 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 291-350 chr5 55321997 55322247 + 2 NA intron (NM_015360, intron 1 of 26) intron (NM_015360, intron 1 of 26) 14133 NM_015360 23517 Hs.274531 NM_015360 ENSG00000039123 MTREX Dob1|KIAA0052|Mtr4|SKIV2L2|fSAP118 Mtr4 exosome RNA helicase protein-coding 215-40 chr10 83209154 83209320 + 2 NA Intergenic Intergenic 467852 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 265-278 chr4 100489346 100489478 + 2 NA intron (NM_001159694, intron 1 of 10) L1M2|LINE|L1 28610 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 471-34 chr10 81012705 81013146 + 2 NA Intergenic Intergenic 363128 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 430-252 chr5 126128195 126128503 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -51228 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 242-183 chr2 68696376 68696556 + 2 NA Intergenic LTR8B|LTR|ERV1 -38345 NM_001166277 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 219-304 chr6 16387105 16387288 + 2 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 148609 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 300-296 chr3 159147613 159147797 + 2 NA intron (NM_001197113, intron 1 of 10) intron (NM_001197113, intron 1 of 10) 78386 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 456-49 chr11 85150045 85150478 + 2 NA intron (NM_001142699, intron 5 of 27) AluY|SINE|Alu -226840 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 565-4 chr1 79505735 79506178 + 2 NA Intergenic Intergenic -499226 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 394-226 chr3 180332086 180332363 + 2 NA Intergenic Intergenic -81949 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 388-349 chr8 114692765 114693078 + 2 NA Intergenic Intergenic 975092 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 520-60 chr11 121267303 121267581 + 2 NA Intergenic Intergenic -25329 NM_006918 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 197-50 chr13 50758235 50758379 + 2 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -49548 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 364-181 chr18 5320997 5321330 + 2 NA Intergenic Intergenic -24110 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 277-232 chr20 46537897 46538133 + 2 NA Intergenic MIRc|SINE|MIR 12639 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 228-13 chr1 96920044 96920212 + 2 NA Intergenic (TCTCCT)n|Simple_repeat|Simple_repeat -175795 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 198-159 chr3 28637322 28637472 + 2 NA intron (NR_038840, intron 2 of 4) intron (NR_038840, intron 2 of 4) 62119 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 296-252 chr2 188269291 188269534 + 2 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 18279 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 529-214 chr8 83420603 83420971 + 2 NA Intergenic HERVL74-int|LTR|ERVL 17029 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 191-157 chr4 151489073 151489203 + 2 NA intron (NM_001109977, intron 3 of 13) L1PBa|LINE|L1 79962 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 237-407 chr9 40923504 40923700 + 2 NA Intergenic CER|Satellite|Satellite 5490 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 205-206 chr4 101853332 101853529 + 2 NA intron (NM_017935, intron 2 of 16) MER90a|LTR|ERV1 39588 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 610-166 chr7 109271789 109272397 + 2 NA Intergenic L1MA9|LINE|L1 -387506 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 393-221 chr3 94416122 94416452 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie 353226 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 435-199 chr5 101949092 101949462 + 2 NA Intergenic LTR47A|LTR|ERVL 347007 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 670-112 chr7 51960789 51961258 + 2 NA Intergenic MER34C_|LTR|ERV1 -567767 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 225-395 chr9 95645180 95645344 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -128205 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 305-43 chr1 216665374 216665565 + 2 NA intron (NM_001243506, intron 2 of 6) L1MB2|LINE|L1 57960 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 269-347 chr6 71896803 71896978 + 2 NA intron (NM_001350412, intron 1 of 2) L2c|LINE|L2 10187 NM_001350412 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 259-287 chr4 75094307 75094476 + 2 NA Intergenic L1MA1|LINE|L1 -9683 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 215-256 chr5 65208506 65208656 + 2 NA intron (NR_135689, intron 21 of 25) intron (NR_135689, intron 21 of 25) 273339 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 246-167 chr18 13342218 13342421 + 2 NA intron (NM_181482, intron 2 of 5) L1MB2|LINE|L1 64214 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 662-20 chr14 21344362 21344928 + 2 NA intron (NM_020366, intron 21 of 23) intron (NM_020366, intron 21 of 23) 39374 NM_007192 11198 Hs.213724 NM_007192 ENSG00000092201 SUPT16H CDC68|FACTP140|SPT16|SPT16/CDC68 SPT16 homolog, facilitates chromatin remodeling subunit protein-coding 323-4 chr1 41258360 41258650 + 2 NA Intergenic L1PA12|LINE|L1 -16199 NM_001350667 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 315-406 chr5 178873201 178873401 + 2 NA intron (NM_058230, intron 4 of 4) L1MD1|LINE|L1 13348 NM_058230 117608 Hs.724051 NM_058230 ENSG00000178338 ZNF354B KID2 zinc finger protein 354B protein-coding 341-541 chr8 127130114 127130304 + 2 NA Intergenic Intergenic -47988 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 381-219 chr2 229398969 229399242 + 2 NA intron (NM_139072, intron 10 of 12) L1MD1|LINE|L1 -127818 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 227-231 chr3 95512953 95513155 + 2 NA Intergenic L2c|LINE|L2 170139 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 470-13 chr1 191094155 191094530 + 2 NA Intergenic MLT2B1|LTR|ERVL 134156 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 368-15 chr1 93016319 93016561 + 2 NA Intergenic Intergenic -54918 NM_001252269 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 213-197 chr4 35901855 35902009 + 2 NA Intergenic ERVL47-int|LTR|ERVL 342007 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 605-84 chr4 7407307 7407808 + 2 NA intron (NM_020777, intron 2 of 26) L1PB4|LINE|L1 27373 NM_001085382 768239 Hs.662523 NM_001085382 ENSG00000178597 PSAPL1 - prosaposin like 1 (gene/pseudogene) protein-coding 357-213 chr2 126938515 126938797 + 2 NA Intergenic Intergenic 39766 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 292-88 chr11 133180831 133181020 + 2 NA intron (NM_001012393, intron 1 of 7) L1MD2|LINE|L1 -237157 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 481-203 chr3 110767283 110767589 + 2 NA Intergenic Intergenic 302523 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 304-561 chr9 133389972 133390176 + 2 NA intron (NR_103997, intron 7 of 13).2 AluJr|SINE|Alu -12125 NM_001280788 6836 Hs.512465 NM_033161 ENSG00000148248 SURF4 ERV29 surfeit 4 protein-coding 358-370 chr5 68636576 68636884 + 2 NA Intergenic L1MEf|LINE|L1 344153 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 611-37 chr14 36675147 36675593 + 2 NA intron (NM_006194, intron 4 of 4) intron (NM_006194, intron 4 of 4) 17802 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 333-197 chr17 77079409 77079598 + 2 NA Intergenic Intergenic -9140 NR_027058 654434 Hs.720923 NR_027058 ENSG00000234912 SNHG20 C17orf86|LINC00338|NCRNA00338|SCARNA16HG small nucleolar RNA host gene 20 ncRNA 430-145 chr2 82545578 82545837 + 2 NA Intergenic L1PB4|LINE|L1 -311096 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 441-44 chr11 83930552 83930908 + 2 NA intron (NM_001142699, intron 14 of 27) MLT1J|LTR|ERVL-MaLR -248305 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 237-239 chr3 74953158 74953313 + 2 NA Intergenic L1MC|LINE|L1 -261241 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 198-179 chr4 55555413 55555565 + 2 NA Intergenic Intergenic -8580 NM_004898 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 672-67 chr22 27248428 27248896 + 2 NA Intergenic Intergenic -23983 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 302-293 chr3 103771293 103771449 + 2 NA Intergenic AluSg|SINE|Alu -247255 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 762-69 chr8 59856668 59857177 + 2 NA Intergenic L1PA14|LINE|L1 424478 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 263-173 chr18 55961346 55961555 + 2 NA Intergenic Intergenic -41251 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 318-533 chr8 55668662 55668930 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 104582 NM_001363177 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 210-102 chr18 3233017 3233175 + 2 NA Intergenic Intergenic -12988 NM_003803 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 343-423 chr5 41416234 41416527 + 2 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 94221 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 309-182 chr15 95602278 95602505 + 2 NA Intergenic Intergenic 169298 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 442-27 chr10 64060842 64061275 + 2 NA Intergenic Intergenic -539168 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 203-16 chr1 218654707 218654841 + 2 NA intron (NR_031644, intron 3 of 6) L2a|LINE|L2 144679 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 231-184 chr2 170334206 170334430 + 2 NA intron (NM_001083615, intron 7 of 33) MLT1J|LTR|ERVL-MaLR 16625 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 443-102 chr15 49952253 49952624 + 2 NA intron (NR_073597, intron 14 of 26) L1PA10|LINE|L1 160941 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 874-14 chr20 62084747 62085477 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -19302 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 405-255 chr5 100299490 100299838 + 2 NA Intergenic MER8|DNA|TcMar-Tigger 88590 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 349-521 chr9 108204799 108204998 + 2 NA Intergenic L1MA1|LINE|L1 651088 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 377-326 chr5 92426987 92427313 + 2 NA Intergenic L1MD2|LINE|L1 -1043833 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 456-258 chr5 112049222 112049613 + 2 NA Intergenic L1PA14|LINE|L1 -72485 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 354-45 chr10 31674555 31674795 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 234251 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 280-42 chr10 12964775 12964974 + 2 NA intron (NM_001282658, intron 6 of 6) MER34A|LTR|ERV1 36839 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 262-293 chr3 162471518 162471727 + 2 NA Intergenic Intergenic 831679 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 183-101 chr4 39129667 39129797 + 2 NA Intergenic Intergenic -52797 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 426-242 chr5 97196334 97196748 + 2 NA Intergenic L1PA16|LINE|L1 -13294 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 365-59 chr10 96268684 96268901 + 2 NA intron (NM_013314, intron 1 of 16) intron (NM_013314, intron 1 of 16) 2724 NM_001258440 29760 Hs.665244 NM_013314 ENSG00000095585 BLNK AGM4|BASH|BLNK-S|LY57|SLP-65|SLP65|bca B cell linker protein-coding 296-86 chr12 3947832 3948073 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -74504 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 394-315 chr7 135239598 135239962 + 2 NA intron (NM_182489, intron 1 of 8) intron (NM_182489, intron 1 of 8) 7801 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 320-249 chr2 12864105 12864304 + 2 NA Intergenic LOR1a|LTR|ERV1 126837 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 486-256 chr6 50477347 50477741 + 2 NA Intergenic L1PA4|LINE|L1 -236000 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 240-155 chr15 60106358 60106525 + 2 NA Intergenic Intergenic 102130 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 201-195 chr5 58512336 58512504 + 2 NA Intergenic Intergenic 17689 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 245-152 chr16 30152521 30152713 + 2 NA Intergenic L1MB1|LINE|L1 -29308 NM_001109891 5595 Hs.861 NM_002746 ENSG00000102882 MAPK3 ERK-1|ERK1|ERT2|HS44KDAP|HUMKER1A|P44ERK1|P44MAPK|PRKM3|p44-ERK1|p44-MAPK mitogen-activated protein kinase 3 protein-coding 282-453 chr8 88812565 88812767 + 2 NA Intergenic L1PA17|LINE|L1 -485183 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 219-341 chr7 93212565 93212738 + 2 NA intron (NM_001346642, intron 3 of 9) intron (NM_001346642, intron 3 of 9) 6920 NM_001288810 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 410-287 chr7 104475452 104475763 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 146951 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 420-172 chr22 29530862 29531191 + 2 NA intron (NM_001002879, intron 8 of 19) intron (NM_001002879, intron 8 of 19) 22629 NM_001002879 8563 Hs.75361 NM_003678 ENSG00000100296 THOC5 C22orf19|Fmip|PK1.3|fSAP79 THO complex 5 protein-coding 371-308 chr5 45857309 45857558 + 2 NA Intergenic L1ME3Cz|LINE|L1 -161053 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 347-333 chr4 30107780 30108041 + 2 NA Intergenic MIR|SINE|MIR -612459 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 201-188 chr5 23844636 23844816 + 2 NA Intergenic Intergenic -106622 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 250-464 chr9 110818081 110818261 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy 89909 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 463-207 chr4 48514910 48515258 + 2 NA exon (NM_015030, exon 56 of 64) exon (NM_015030, exon 56 of 64) 24832 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 199-39 chr11 84610699 84610851 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 110167 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 425-118 chr18 61730453 61730738 + 2 NA Intergenic MER34B|LTR|ERV1 -17581 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 562-183 chr5 145615602 145616152 + 2 NA Intergenic L1PB1|LINE|L1 219465 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 620-39 chr14 68418703 68419224 + 2 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 209824 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 177-54 chr15 46197328 46197441 + 2 NA Intergenic L1PA10|LINE|L1 492189 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 649-31 chr16 13872451 13873070 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -47397 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 142-34 chr19 15801384 15801466 + 2 NA Intergenic MLT2B2|LTR|ERVL 6701 NM_013940 26539 Hs.533925 NM_013940 ENSG00000186723 OR10H1 - olfactory receptor family 10 subfamily H member 1 protein-coding 298-217 chr2 75813433 75813700 + 2 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -102651 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 736-74 chr6 54682344 54682793 + 2 NA Intergenic Intergenic -164203 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 309-125 chr13 54504987 54505276 + 2 NA Intergenic Intergenic -193083 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 215-98 chr16 7540044 7540174 + 2 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 207264 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 158-111 chr8 31936145 31936249 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -89539 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 261-250 chr3 110399743 110399934 + 2 NA Intergenic Intergenic 670121 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 444-181 chr4 135317463 135317771 + 2 NA Intergenic L1M1|LINE|L1 -194058 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 349-76 chr10 82488889 82489145 + 2 NA intron (NR_163253, intron 3 of 10) MIRb|SINE|MIR -256097 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 344-210 chr19 37193721 37193987 + 2 NA intron (NM_152279, intron 2 of 4) L1MC5a|LINE|L1 16682 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 255-193 chr2 59312651 59312822 + 2 NA Intergenic Intergenic 95028 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 395-3 chr1 29630345 29630711 + 2 NA Intergenic MIR|SINE|MIR -280414 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 298-396 chr6 56188126 56188329 + 2 NA intron (NM_001318752, intron 1 of 28) L1MEc|LINE|L1 59353 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 234-112 chr15 63232406 63232604 + 2 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) 42899 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 446-318 chr8 137009992 137010422 + 2 NA Intergenic Intergenic 403381 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 290-155 chr16 18845097 18845312 + 2 NA intron (NM_015092, intron 39 of 62) intron (NM_015092, intron 39 of 62) -43655 NM_015161 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 357-275 chr3 90654008 90654284 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1546525 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 389-252 chr4 2369263 2369508 + 2 NA intron (NM_020972, intron 1 of 12) intron (NM_020972, intron 1 of 12) -4571 NM_001172659 57732 Hs.292056 NM_020972 ENSG00000159733 ZFYVE28 LST2|LYST2 zinc finger FYVE-type containing 28 protein-coding 389-266 chr4 79414645 79414995 + 2 NA Intergenic Intergenic -6592 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 362-337 chr5 15343999 15344213 + 2 NA Intergenic Intergenic -77546 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 295-501 chr9 90262979 90263177 + 2 NA Intergenic L2a|LINE|L2 170411 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 475-162 chr20 55013707 55014030 + 2 NA Intergenic MIR|SINE|MIR -409175 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 512-140 chr2 226014013 226014319 + 2 NA Intergenic Intergenic -128628 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 321-333 chr20 43043724 43044011 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 75124 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 353-268 chr2 196574460 196574778 + 2 NA intron (NM_001348768, intron 1 of 28) L1MA9|LINE|L1 18364 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 294-51 chr10 123354786 123354978 + 2 NA Intergenic Intergenic 200480 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 543-61 chr12 60820162 60820561 + 2 NA Intergenic L1ME1|LINE|L1 1130991 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 269-164 chr18 42807113 42807374 + 2 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 308442 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 127-9 chr1 225983269 225983357 + 2 NA 3' UTR (NM_152608, exon 7 of 7) 3' UTR (NM_152608, exon 7 of 7) 16030 NM_152608 163859 Hs.520192 NM_152608 ENSG00000143751 SDE2 C1orf55|dJ671D7.1 SDE2 telomere maintenance homolog protein-coding 120-21 chr16 7286160 7286244 + 2 NA intron (NM_018723, intron 4 of 15) MIRb|SINE|MIR -46643 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 458-266 chr8 120057825 120058181 + 2 NA Intergenic L2a|LINE|L2 -67099 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 358-315 chr3 181929720 181930033 + 2 NA Intergenic Intergenic -22488 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 246-206 chr2 144464547 144464770 + 2 NA intron (NM_001171653, intron 2 of 8) intron (NM_001171653, intron 2 of 8) -54956 NR_040248 100303491 Hs.560789 NR_040248 ENSG00000238057 ZEB2-AS1 ZEB2-AS|ZEB2AS|ZEB2NAT ZEB2 antisense RNA 1 ncRNA 568-42 chr13 65759092 65759549 + 2 NA Intergenic L1M2|LINE|L1 -106727 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 208-38 chr11 72505397 72505581 + 2 NA Intergenic L1PA13|LINE|L1 -65167 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 259-184 chr2 11488966 11489132 + 2 NA Intergenic L2a|LINE|L2 -22872 NM_001278277 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 763-43 chr3 79627669 79628275 + 2 NA intron (NM_002941, intron 1 of 30) L1PA8A|LINE|L1 120085 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 270-268 chr4 73981054 73981293 + 2 NA 3' UTR (NM_001363352, exon 3 of 3) 3' UTR (NM_001363352, exon 3 of 3) 854 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 307-296 chr3 29204715 29204995 + 2 NA Intergenic Intergenic 76084 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 300-315 chr4 45517095 45517310 + 2 NA Intergenic Intergenic 606852 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 553-41 chr12 15371679 15372072 + 2 NA intron (NM_030667, intron 1 of 26) THE1D|LTR|ERVL-MaLR 49367 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 228-373 chr9 83547066 83547225 + 2 NA Intergenic L1M2|LINE|L1 -8744 NM_174938 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 226-195 chr20 6270240 6270404 + 2 NA Intergenic Intergenic -146778 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 261-68 chr11 85335870 85336041 + 2 NA intron (NM_001142699, intron 3 of 27) L1PA15|LINE|L1 291315 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 440-163 chr3 77559337 77559718 + 2 NA intron (NM_001290039, intron 10 of 26) intron (NM_001290039, intron 10 of 26) 461515 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 427-65 chr13 86789001 86789419 + 2 NA Intergenic Intergenic -122710 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 166-109 chr7 30973068 30973218 + 2 NA intron (NM_000823, intron 6 of 12) Tigger2a|DNA|TcMar-Tigger 9190 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 458-273 chr9 105064536 105064910 + 2 NA Intergenic (GCCAGCT)n|Simple_repeat|Simple_repeat -136568 NM_005502 19 Hs.659274 NM_005502 ENSG00000165029 ABCA1 ABC-1|ABC1|CERP|HDLDT1|TGD ATP binding cassette subfamily A member 1 protein-coding 443-214 chr4 20306731 20306989 + 2 NA intron (NM_001289135, intron 4 of 35) L2c|LINE|L2 54955 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 274-52 chr10 98056671 98056854 + 2 NA Intergenic L2b|LINE|L2 -25934 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 150-30 chr12 98090067 98090182 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -94676 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 687-23 chr11 24856249 24856741 + 2 NA intron (NM_001252010, intron 5 of 9) L1PB4|LINE|L1 359442 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 227-127 chr16 68492129 68492328 + 2 NA Intergenic MIR3|SINE|MIR -43720 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 380-189 chr2 107419922 107420205 + 2 NA Intergenic Intergenic -70538 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 337-162 chr14 80126833 80127131 + 2 NA Intergenic Intergenic -84437 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 234-277 chr4 72004183 72004388 + 2 NA Intergenic MER101-int|LTR|ERV1 -27519 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 283-297 chr3 106365499 106365684 + 2 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -496190 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 296-370 chr5 53175706 53175905 + 2 NA Intergenic L1MEf|LINE|L1 65963 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 232-301 chr5 46306689 46306914 + 2 NA Intergenic ALR/Alpha|Satellite|centr -610421 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 597-139 chrX 47447347 47447711 + 2 NA exon (NM_007130, exon 5 of 5) exon (NM_007130, exon 5 of 5) 20140 NM_001324156 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 131 chr1 18048909 18048993 + 2 NA Intergenic Intergenic -16706 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 289-382 chr5 111539632 111539783 + 2 NA intron (NR_040093, intron 1 of 6) MIRc|SINE|MIR -27110 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 138-100 chr9 30792438 30792517 + 2 NA Intergenic Intergenic -384023 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 285-150 chr16 87168733 87168909 + 2 NA Intergenic L1ME4b|LINE|L1 -43294 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 233-274 chr4 123292673 123292840 + 2 NA intron (NM_001345856, intron 15 of 15) L1PB3|LINE|L1 -104039 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 432-161 chr21 25490884 25491239 + 2 NA Intergenic Intergenic -59360 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 195-94 chr18 67397398 67397549 + 2 NA Intergenic L1M5|LINE|L1 -119073 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 222-118 chr15 47378980 47379143 + 2 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 194972 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 326-233 chr2 22752148 22752393 + 2 NA Intergenic Plat_L3|LINE|CR1 215791 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 301-402 chr6 132096345 132096598 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 18792 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 160-114 chr8 9987838 9987969 + 2 NA Intergenic HAL1ME|LINE|L1 -66389 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 323-130 chr13 113903634 113903923 + 2 NA intron (NM_001278674, intron 3 of 7) intron (NM_001278674, intron 3 of 7) 8675 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 225-309 chr6 54761598 54761749 + 2 NA Intergenic Intergenic -85098 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 271-180 chr18 52259060 52259277 + 2 NA Intergenic Intergenic -81029 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 766-70 chr8 88216391 88216950 + 2 NA intron (NM_005941, intron 1 of 9) L1MC4|LINE|L1 110813 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 286-128 chr14 82577163 82577344 + 2 NA Intergenic L1PA4|LINE|L1 -65379 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 370-148 chr14 71152653 71152919 + 2 NA Intergenic Intergenic -167690 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 282-71 chr11 47765067 47765277 + 2 NA intron (NM_001318339, intron 2 of 16) intron (NM_001318339, intron 2 of 16) 2169 NM_001318339 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 317-430 chr6 148834946 148835229 + 2 NA intron (NM_005715, intron 1 of 7) MER2|DNA|TcMar-Tigger 88057 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 319-282 chr2 228257112 228257337 + 2 NA Intergenic Intergenic -75537 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 149-35 chr15 89602173 89602259 + 2 NA intron (NM_001308025, intron 12 of 21) Tigger3d|DNA|TcMar-Tigger 26629 NM_001308025 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 505-49 chr11 54827008 54827348 + 2 NA Intergenic ALR/Alpha|Satellite|centr 120346 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 314-355 chr22 46565606 46565797 + 2 NA Intergenic AluSx|SINE|Alu -11387 NM_001366660 23151 Hs.475150 NM_015124 ENSG00000075240 GRAMD4 DIP GRAM domain containing 4 protein-coding 431-207 chr4 100224839 100225107 + 2 NA Intergenic L1MA4A|LINE|L1 -34505 NM_145244 115265 Hs.480378 NM_145244 ENSG00000145358 DDIT4L REDD2|Rtp801L DNA damage inducible transcript 4 like protein-coding 289-14 chr1 102001312 102001588 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -4216 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 358-483 chr8 103949171 103949390 + 2 NA intron (NR_145711, intron 11 of 21) L1M5|LINE|L1 130060 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 163-53 chr16 49117363 49117510 + 2 NA Intergenic L2b|LINE|L2 164402 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 272-81 chr11 132223010 132223231 + 2 NA intron (NM_016522, intron 3 of 6) intron (NM_016522, intron 3 of 6) -61182 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 405-263 chr5 152232699 152233087 + 2 NA intron (NR_109876, intron 1 of 2) MLT1C|LTR|ERVL-MaLR 172386 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 227-187 chr2 150028437 150028624 + 2 NA Intergenic Intergenic -169339 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 329-213 chr17 33949649 33949917 + 2 NA intron (NM_001094, intron 1 of 9) MIR|SINE|MIR 207023 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 397-17 chr1 184851746 184852073 + 2 NA intron (NM_052966, intron 5 of 13) intron (NM_052966, intron 5 of 13) -97051 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 412-228 chr4 31914838 31915114 + 2 NA Intergenic Intergenic -82403 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 351-404 chr5 158615056 158615329 + 2 NA Intergenic Intergenic -205419 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 355-497 chr8 67615839 67616160 + 2 NA intron (NM_020361, intron 2 of 10) L2c|LINE|L2 130361 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 601-70 chr2 17559328 17559709 + 2 NA intron (NM_001366806, intron 1 of 3) MIR3|SINE|MIR 18822 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 472-316 chr8 91124746 91125131 + 2 NA intron (NM_001129890, intron 2 of 7) intron (NM_001129890, intron 2 of 7) 22319 NR_148895 100130742 Hs.733070 NM_001129890 ENSG00000214954 LRRC69 - leucine rich repeat containing 69 protein-coding 229-273 chr4 58868395 58868569 + 2 NA Intergenic Intergenic -115800 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 493-274 chr7 50375765 50376169 + 2 NA intron (NM_001291840, intron 2 of 2) intron (NM_001291840, intron 2 of 2) 56919 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 380-352 chr6 165259211 165259491 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 50254 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 364-451 chr8 114101041 114101333 + 2 NA Intergenic Intergenic -664248 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 449-103 chr19 269406 269743 + 2 NA Intergenic L1MC3|LINE|L1 21565 NM_177543 8612 Hs.465506 NM_003712 ENSG00000141934 PLPP2 LPP2|PAP-2c|PAP2-g|PPAP2C phospholipid phosphatase 2 protein-coding 342-13 chr1 79272609 79272917 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -266033 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 778-60 chr7 17170111 17170564 + 2 NA Intergenic L1MEc|LINE|L1 -128315 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 447-257 chr8 35034501 35034782 + 2 NA Intergenic MER57E1|LTR|ERV1 -200834 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 248-162 chr19 51267005 51267141 + 2 NA intron (NM_001308437, intron 2 of 3) intron (NM_001308437, intron 2 of 3) 3190 NM_001308437 284369 Hs.381087 NM_173635 ENSG00000179213 SIGLECL1 C19orf75|SIGLEC23P|SIGLECP7 SIGLEC family like 1 protein-coding 342-6 chr1 37017452 37017682 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 16948 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 671-77 chr5 63842263 63842800 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 119761 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 372-140 chr14 53661492 53661823 + 2 NA Intergenic L1ME1|LINE|L1 286827 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 409-19 chr10 28366023 28366344 + 2 NA Intergenic LTR48B|LTR|ERV1 -63119 NM_001318170 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 363-110 chr12 118839707 118839917 + 2 NA Intergenic Intergenic -6276 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 266-183 chr2 99665108 99665291 + 2 NA intron (NM_001025108, intron 11 of 23) L2c|LINE|L2 -175182 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 555-85 chr2 18952502 18952957 + 2 NA Intergenic Intergenic 74242 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 348-343 chr4 31279885 31280114 + 2 NA Intergenic L1MA4|LINE|L1 108855 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 299-484 chr9 76172435 76172642 + 2 NA intron (NR_120409, intron 12 of 19) intron (NR_120409, intron 12 of 19) 221888 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 744-58 chr5 144003570 144004284 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 166732 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 612-157 chrX 83523566 83524073 + 2 NA Intergenic Intergenic 15529 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 471-260 chr8 74530692 74531039 + 2 NA Intergenic L1MA8|LINE|L1 -17678 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 479-233 chr7 88788129 88788589 + 2 NA intron (NM_181646, intron 1 of 3) L2a|LINE|L2 7378 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 441-16 chr1 217761601 217761978 + 2 NA intron (NM_138796, intron 6 of 10) intron (NM_138796, intron 6 of 10) 23331 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 323-576 chr9 32308687 32308975 + 2 NA Intergenic L1PB|LINE|L1 -75772 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 277-424 chr8 116989824 116989973 + 2 NA intron (NM_001172811, intron 2 of 9) MER117|DNA|hAT-Charlie 38923 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 360-128 chr14 77234335 77234667 + 2 NA intron (NM_020431, intron 8 of 23) intron (NM_020431, intron 8 of 23) -31717 NR_031661 100302236 NR_031661 ENSG00000221754 MIR1260A MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a microRNA 1260a ncRNA 538-152 chr3 97278630 97279137 + 2 NA intron (NM_001080448, intron 5 of 17) MER70C|LTR|ERVL -160724 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 250-363 chr5 141251655 141251842 + 2 NA Intergenic Intergenic 6353 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 215-111 chr17 41476043 41476206 + 2 NA TTS (NM_002280) TTS (NM_002280) 5016 NM_002280 3886 Hs.73082 NM_002280 ENSG00000197079 KRT35 HA5|Ha-5|K35|KRTHA5|hHa5 keratin 35 protein-coding 187-125 chr3 193904371 193904525 + 2 NA Intergenic Intergenic -60439 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 317-369 chr4 188588268 188588562 + 2 NA intron (NR_033869, intron 4 of 4) MER39|LTR|ERV1 132837 NR_033869 401164 Hs.435756 NR_033869 ENSG00000249378 LINC01060 - long intergenic non-protein coding RNA 1060 ncRNA 336-489 chr6 62862405 62862656 + 2 NA Intergenic SATR1|Satellite|Satellite 457447 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 316-593 chr9 118065922 118066095 + 2 NA Intergenic L1PB1|LINE|L1 361605 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 350-48 chr10 61323729 61323922 + 2 NA Intergenic MIR|SINE|MIR -128814 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 238-151 chr18 40829178 40829393 + 2 NA Intergenic Intergenic 691392 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 408-218 chr3 143636984 143637364 + 2 NA intron (NM_173653, intron 6 of 15) L1PA15-16|LINE|L1 211294 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 656-91 chr5 24326556 24327099 + 2 NA Intergenic Intergenic 318151 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 283-69 chr10 114607376 114607554 + 2 NA intron (NM_001322886, intron 1 of 20) L1MC3|LINE|L1 6271 NM_001352442 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 415-250 chr7 27241099 27241432 + 2 NA TTS (NR_120507) TTS (NR_120507) -1537 NM_001304519 2128 Hs.369879 NM_001989 ENSG00000106038 EVX1 EVX-1 even-skipped homeobox 1 protein-coding 246-40 chr10 44133675 44133876 + 2 NA Intergenic Intergenic -158975 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 210-193 chr4 55331551 55331755 + 2 NA Intergenic AluJr4|SINE|Alu -14589 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 182-129 chr4 152042487 152042606 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -58207 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 618-42 chr16 85842135 85842701 + 2 NA Intergenic Intergenic 42723 NM_001318797 1327 Hs.433419 NM_001861 ENSG00000131143 COX4I1 COX IV-1|COX4|COX4-1|COXIV|COXIV-1 cytochrome c oxidase subunit 4I1 protein-coding 811-39 chr5 89085241 89085703 + 2 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -181367 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 506-85 chr14 55710271 55710613 + 2 NA Intergenic (TTAATAT)n|Simple_repeat|Simple_repeat -55803 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 236-319 chr7 31589216 31589445 + 2 NA intron (NM_194300, intron 8 of 12) L1MEf|LINE|L1 36328 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 180-157 chr7 56231779 56231870 + 2 NA Intergenic Intergenic -115407 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 135-26 chr16 52666610 52666736 + 2 NA Intergenic Intergenic -59698 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 256-106 chr13 74823279 74823494 + 2 NA Intergenic Intergenic 270543 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 401-170 chr2 121876495 121876876 + 2 NA Intergenic LTR106_Mam|LTR|LTR 121034 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 480-60 chr13 32621721 32622097 + 2 NA intron (NM_015032, intron 1 of 34) MER58A|DNA|hAT-Charlie 35457 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 254-130 chr15 61582567 61582731 + 2 NA Intergenic Tigger12|DNA|TcMar-Tigger -147269 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 519-190 chr5_GL000208v1_random 1284 1672 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 264-56 chr10 82241516 82241699 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -8687 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 287-89 chr11 45501792 45501947 + 2 NA Intergenic Intergenic 130472 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 335-480 chr6 161119817 161120048 + 2 NA Intergenic L1M4|LINE|L1 42050 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 330-469 chr6 141953266 141953566 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 135383 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 343-522 chr7 118138119 118138425 + 2 NA Intergenic L1MA8|LINE|L1 -45892 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 299-92 chr11 131030897 131031061 + 2 NA Intergenic Intergenic -114492 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 432-179 chr3 94566335 94566705 + 2 NA Intergenic Intergenic -371743 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 159-5 chr1 111334765 111334862 + 2 NA Intergenic L1M3f|LINE|L1 -11747 NR_125338 128344 Hs.172510 NM_181643 ENSG00000173947 PIFO C1orf88|pitchfork primary cilia formation protein-coding 190-191 chr9 8218391 8218579 + 2 NA Intergenic Intergenic -418707 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 366-488 chrX 99261440 99261752 + 2 NA Intergenic L1M1|LINE|L1 1148677 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 297-111 chr12 62061395 62061615 + 2 NA intron (NM_178539, intron 1 of 4) Tigger3b|DNA|TcMar-Tigger 131334 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 324-370 chr3 166583531 166583715 + 2 NA Intergenic L1PA16|LINE|L1 -315060 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 509-60 chr12 128154438 128154913 + 2 NA Intergenic Intergenic 36458 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 360-138 chr15 36606560 36606844 + 2 NA intron (NM_001290232, intron 1 of 10) intron (NM_001290232, intron 1 of 10) 11825 NM_001290232 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 577-102 chr2 213086615 213087000 + 2 NA intron (NM_001371277, intron 3 of 6) intron (NM_001371277, intron 3 of 6) 63630 NM_016260 22807 Hs.604950 NM_016260 ENSG00000030419 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 protein-coding 319-465 chr6 88484966 88485200 + 2 NA Intergenic L1ME1|LINE|L1 54286 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 288-210 chr2 138280772 138280979 + 2 NA Intergenic Intergenic 178991 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 693-110 chr9 22232659 22233228 + 2 NA Intergenic L1PA11|LINE|L1 -213881 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 237-60 chr11 100547408 100547563 + 2 NA Intergenic MIR|SINE|MIR -139803 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 461-45 chr10 127508718 127509140 + 2 NA Intergenic L1ME3Cz|LINE|L1 -40420 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 556-101 chr2 73830717 73831231 + 2 NA exon (NM_001353969, exon 2 of 11) exon (NM_001353969, exon 2 of 11) 2007 NM_001353974 10617 Hs.469018 NM_006463 ENSG00000124356 STAMBP AMSH|MICCAP STAM binding protein protein-coding 232-171 chr2 59797547 59797752 + 2 NA Intergenic Intergenic 579941 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 498-289 chr9 79746336 79746778 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -77973 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 168-98 chr6 80229820 80229933 + 2 NA intron (NR_134945, intron 9 of 10) L1M5|LINE|L1 123205 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 388-231 chr3 96450098 96450434 + 2 NA Intergenic Intergenic 90302 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 320-355 chr3 95065981 95066164 + 2 NA Intergenic L1P4|LINE|L1 127809 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 303-286 chr3 96177426 96177681 + 2 NA Intergenic Intergenic -182411 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 365-385 chr7 120454209 120454531 + 2 NA intron (NM_012281, intron 1 of 5) L1PA13|LINE|L1 181195 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 385-133 chr17 43347049 43347354 + 2 NA Intergenic HERVK13-int|LTR|ERVK 41697 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 335-576 chrX 11840493 11840710 + 2 NA intron (NM_001368398, intron 1 of 18) L1ME1|LINE|L1 18162 NM_001368395 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 371-251 chr3 114482763 114483080 + 2 NA intron (NR_121661, intron 1 of 2) L2c|LINE|L2 29328 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 309-87 chr11 85206094 85206250 + 2 NA intron (NM_001142699, intron 4 of 27) MSTA|LTR|ERVL-MaLR -282751 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 395-126 chr16 68557930 68558286 + 2 NA non-coding (NR_130978, exon 3 of 5) non-coding (NR_130978, exon 3 of 5) 18817 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 224-266 chr5 158130173 158130353 + 2 NA Intergenic Intergenic -271118 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 256-10 chr1 73345875 73346085 + 2 NA Intergenic MER101-int|LTR|ERV1 39810 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 259-218 chr2 179509803 179510001 + 2 NA intron (NR_148056, intron 5 of 9) intron (NR_148056, intron 5 of 9) 52686 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 372-97 chr12 6174420 6174715 + 2 NA Intergenic L1MC5|LINE|L1 -25379 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 262-154 chr16 22064081 22064261 + 2 NA intron (NM_001164579, intron 1 of 2) intron (NM_001164579, intron 1 of 2) -28370 NM_173615 146177 Hs.10697 NM_173615 ENSG00000175267 VWA3A - von Willebrand factor A domain containing 3A protein-coding 295-399 chr6 39285164 39285353 + 2 NA Intergenic Intergenic 29161 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 603-9 chr1 213431005 213431518 + 2 NA Intergenic Intergenic 380020 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 421-38 chr11 44626500 44626851 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 61012 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 350-164 chr16 61201453 61201713 + 2 NA Intergenic Intergenic -145817 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 340-439 chr5 43951357 43951595 + 2 NA Intergenic MIR|SINE|MIR -348246 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 249-461 chrX 43058934 43059116 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -117969 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 323-308 chr22 26087621 26087815 + 2 NA Intergenic MIRb|SINE|MIR -81744 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 330-454 chr6 20210809 20211100 + 2 NA intron (NM_001080480, intron 1 of 12) intron (NM_001080480, intron 1 of 12) 1515 NM_001080480 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 229-157 chr18 25730823 25731024 + 2 NA Intergenic L1MEc|LINE|L1 359690 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 361-419 chr7 92971748 92972096 + 2 NA Intergenic Intergenic -135295 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 752-6 chr11 35476446 35477036 + 2 NA intron (NM_015430, intron 3 of 11) intron (NM_015430, intron 3 of 11) 48875 NM_015430 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 356-182 chr16 54029333 54029627 + 2 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) -9913 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 381-410 chr9 107351838 107352191 + 2 NA Intergenic Intergenic 67245 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 235-336 chr7 86127139 86127284 + 2 NA Intergenic L1ME2|LINE|L1 -516698 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 222-347 chr7 81601912 81602103 + 2 NA intron (NR_126025, intron 4 of 10) MSTB2|LTR|ERVL-MaLR 24209 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 388-237 chr3 148747967 148748228 + 2 NA Intergenic Intergenic 17917 NM_032049 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 244-51 chr11 46487570 46487719 + 2 NA intron (NM_001267782, intron 13 of 19) L1M4a2|LINE|L1 -35755 NR_036117 100422827 NR_036117 ENSG00000265014 MIR3160-1 mir-3160-1 microRNA 3160-1 ncRNA 280-201 chr2 113781688 113781891 + 2 NA Intergenic AluY|SINE|Alu -25147 NR_104470 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 261-351 chr7 45669913 45670107 + 2 NA intron (NM_021116, intron 8 of 19) L1M2|LINE|L1 95642 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 294-161 chr17 34486765 34486999 + 2 NA Intergenic Intergenic 92487 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 404-333 chr8 136149942 136150289 + 2 NA Intergenic L1MEf|LINE|L1 -380683 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 395-101 chr14 100806499 100806732 + 2 NA Intergenic Intergenic -7876 NR_039729 100616495 NR_039729 ENSG00000266461 MIR2392 - microRNA 2392 ncRNA 301-88 chr12 20303125 20303391 + 2 NA Intergenic L3|LINE|CR1 -65987 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 367-188 chr2 15884145 15884409 + 2 NA Intergenic L1ME4b|LINE|L1 -36122 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 282-308 chr3 133112045 133112265 + 2 NA intron (NM_001136469, intron 2 of 5) intron (NM_001136469, intron 2 of 5) -12666 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 545-5 chr1 75365739 75366116 + 2 NA intron (NM_001320283, intron 1 of 21) L1M3a|LINE|L1 231539 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 503-25 chr10 28722010 28722395 + 2 NA Intergenic CpG -21448 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 175-144 chr6 62641926 62642096 + 2 NA Intergenic Intergenic -355784 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 268-446 chrX 83218223 83218410 + 2 NA Intergenic L1MB1|LINE|L1 -289974 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 318-350 chr3 42374399 42374698 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 36062 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 254-403 chr8 38773983 38774135 + 2 NA intron (NM_001352804, intron 1 of 10) intron (NM_001352804, intron 1 of 10) -13177 NM_001352781 6867 Hs.279245 NM_006283 ENSG00000147526 TACC1 Ga55 transforming acidic coiled-coil containing protein 1 protein-coding 417-272 chr7 114438767 114439093 + 2 NA intron (NR_033767, intron 2 of 17) intron (NR_033767, intron 2 of 17) 12428 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 217-232 chr3 106286425 106286593 + 2 NA Intergenic L1PREC2|LINE|L1 -417108 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 269-91 chr12 73319713 73319917 + 2 NA Intergenic Intergenic 160625 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 424-182 chr4 10363696 10364082 + 2 NA Intergenic Intergenic 93537 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 314-622 chrX 53452028 53452273 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -17774 NM_001037811 3028 Hs.171280 NM_004493 ENSG00000072506 HSD17B10 17b-HSD10|ABAD|CAMR|DUPXp11.22|ERAB|HADH2|HCD2|HSD10MD|MHBD|MRPP2|MRX17|MRX31|MRXS10|SCHAD|SDR5C1 hydroxysteroid 17-beta dehydrogenase 10 protein-coding 227-180 chr2 122652955 122653116 + 2 NA Intergenic Intergenic 420446 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 342-281 chr20 33254395 33254578 + 2 NA Intergenic L1MA2|LINE|L1 18490 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 503-45 chr10 115819371 115819753 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 375227 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 578-143 chr5 117873450 117873969 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 143348 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 320-128 chr12 116479358 116479554 + 2 NA Intergenic Intergenic -51138 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 323-271 chr2 126652605 126652800 + 2 NA Intergenic L1ME4a|LINE|L1 -3233 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 289-480 chr9 1937032 1937260 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -78201 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 314-36 chr1 191195892 191196154 + 2 NA Intergenic Intergenic 32475 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 354-13 chr1 83589235 83589468 + 2 NA intron (NR_119375, intron 2 of 2) L1MA3|LINE|L1 143297 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 341-201 chr17 74627896 74628152 + 2 NA Intergenic Intergenic -4286 NM_181449 342510 Hs.158954 NM_181449 ENSG00000186407 CD300E CD300LE|CLM-2|CLM2|CMRF35-A5|IREM-2|IREM2|PIgR-2|PIgR2 CD300e molecule protein-coding 285-87 chr12 41174477 41174724 + 2 NA Intergenic L1ME5|LINE|L1 -13720 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 468-28 chr10 39353249 39353582 + 2 NA Intergenic ALR/Alpha|Satellite|centr 656819 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 195-207 chr5 157692846 157693004 + 2 NA Intergenic Intergenic 21392 NM_001145132 100190949 Hs.720862 NM_001145132 ENSG00000187658 C5orf52 - chromosome 5 open reading frame 52 protein-coding 265-258 chr4 33705163 33705414 + 2 NA Intergenic L1MB1|LINE|L1 334605 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 199-19 chr10 44217560 44217730 + 2 NA Intergenic Intergenic -75105 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 223-219 chr3 101224245 101224391 + 2 NA 3' UTR (NM_016247, exon 19 of 19) 3' UTR (NM_016247, exon 19 of 19) 96257 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 371-238 chr3 69566224 69566532 + 2 NA Intergenic L2c|LINE|L2 -173086 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 583-167 chr8 135080267 135080599 + 2 NA Intergenic Intergenic -153698 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 336-264 chr2 57221210 57221516 + 2 NA Intergenic L1M4|LINE|L1 -686288 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 578-97 chr2 218209520 218209911 + 2 NA Intergenic L1M4|LINE|L1 -7474 NM_152862 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 357-339 chr5 35524178 35524528 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -93510 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 481-178 chr20 46486927 46487264 + 2 NA Intergenic L1MEc|LINE|L1 -21803 NR_026640 7686 Hs.717103 NR_026640 ENSG00000225849 MKRN7P MKRNP3|ZNF127L5|dJ981L23.2 makorin ring finger protein 7, pseudogene pseudo 368-457 chr8 99362961 99363264 + 2 NA intron (NM_017890, intron 19 of 61) L1M1|LINE|L1 173618 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 499-27 chr10 57148373 57148736 + 2 NA Intergenic L1MA3|LINE|L1 156005 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 214-80 chr12 34518334 34518478 + 2 NA Intergenic ALR/Alpha|Satellite|centr 495910 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 375-54 chr10 83035859 83036089 + 2 NA Intergenic MLT1E1-int|LTR|ERVL-MaLR 641115 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 311-94 chr12 19011557 19011834 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -118038 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 302-202 chr2 28306088 28306382 + 2 NA intron (NM_001261840, intron 11 of 11) L1ME2|LINE|L1 4224 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 200-40 chr11 10427332 10427525 + 2 NA intron (NR_103765, intron 3 of 3) MIRc|SINE|MIR -22893 NM_001172431 272 Hs.501890 NM_000480 ENSG00000133805 AMPD3 - adenosine monophosphate deaminase 3 protein-coding 210-101 chr17 70701355 70701511 + 2 NA Intergenic Intergenic 500746 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 327 chr1 40498797 40499076 + 2 NA Intergenic L1ME4b|LINE|L1 -9783 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 386-61 chr11 99789351 99789667 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 233364 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 229-168 chr19 37158821 37159003 + 2 NA intron (NM_001288800, intron 2 of 4) L1MC5a|LINE|L1 13524 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 581-101 chr3 105490276 105490602 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 123530 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 183-164 chr8 115306172 115306315 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 361770 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 422-205 chr4 17435147 17435372 + 2 NA Intergenic Intergenic 76831 NM_000320 5860 Hs.75438 NM_000320 ENSG00000151552 QDPR DHPR|HDHPR|PKU2|SDR33C1 quinoid dihydropteridine reductase protein-coding 404-80 chr12 42684001 42684379 + 2 NA intron (NR_135027, intron 4 of 4) intron (NR_135027, intron 4 of 4) -8026 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 426-266 chr7 27589131 27589471 + 2 NA intron (NM_152740, intron 4 of 7) intron (NM_152740, intron 4 of 7) -26673 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 267-191 chr2 75792243 75792431 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -81422 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 609-144 chr8 142358278 142358715 + 2 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 44686 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 517-222 chr5 129345218 129345598 + 2 NA Intergenic Intergenic 51739 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 286-118 chr14 51032832 51033095 + 2 NA intron (NM_015163, intron 1 of 9) Tigger4a|DNA|TcMar-Tigger 62741 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 272-386 chr6 57024742 57024929 + 2 NA intron (NM_152731, intron 6 of 6) L1M3f|LINE|L1 -21697 NM_001286275 57691 Hs.709521 NM_020931 ENSG00000168116 KIAA1586 - KIAA1586 protein-coding 183-116 chr5 28204349 28204461 + 2 NA Intergenic Intergenic 83260 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 306-123 chr13 38808863 38809164 + 2 NA intron (NM_207361, intron 6 of 23) L1M2c|LINE|L1 18578 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 509-255 chr8 109419370 109419740 + 2 NA intron (NM_177531, intron 22 of 77) intron (NM_177531, intron 22 of 77) 57094 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 345-502 chr7 103389164 103389368 + 2 NA intron (NR_120443, intron 10 of 14) intron (NR_120443, intron 10 of 14) 41623 NM_002803 5701 Hs.437366 NM_002803 ENSG00000161057 PSMC2 MSS1|Nbla10058|S7 proteasome 26S subunit, ATPase 2 protein-coding 439-244 chr6 38416535 38416951 + 2 NA intron (NM_001172418, intron 5 of 10) intron (NM_001172418, intron 5 of 10) -64853 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 231-384 chrX 73708852 73709041 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -83259 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 263-358 chr6 62420862 62421054 + 2 NA Intergenic Intergenic -134731 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 273-97 chr12 18791501 18791678 + 2 NA Intergenic L1M1|LINE|L1 53470 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 554-115 chr2 78191987 78192349 + 2 NA intron (NR_110288, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat 98563 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 310-115 chr13 60860694 60860991 + 2 NA Intergenic Intergenic 187887 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 212-256 chr5 54593827 54594015 + 2 NA Intergenic L1ME1|LINE|L1 76162 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 266-95 chr12 112160309 112160539 + 2 NA 3' UTR (NM_001109662, exon 76 of 76) 3' UTR (NM_001109662, exon 76 of 76) 2897 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 263-320 chr5 29288498 29288690 + 2 NA Intergenic Intergenic 107382 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 240-177 chr17 58902770 58902918 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 146975 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 339-52 chr10 20051539 20051871 + 2 NA intron (NM_032812, intron 3 of 13) MER5A|DNA|hAT-Charlie 235273 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 150-68 chr3 72970283 72970404 + 2 NA intron (NM_001080393, intron 6 of 6) AluSz|SINE|Alu -26400 NM_001318026 151987 Hs.431092 NM_174907 ENSG00000163605 PPP4R2 PP4R2 protein phosphatase 4 regulatory subunit 2 protein-coding 326-62 chr10 39085840 39086095 + 2 NA Intergenic ALR/Alpha|Satellite|centr 389371 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 266-88 chr12 33150891 33151066 + 2 NA Intergenic L1ME3|LINE|L1 -254132 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 258-437 chrX 64723648 64723898 + 2 NA Intergenic L1ME3C|LINE|L1 252677 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 199-49 chr12 119356463 119356635 + 2 NA intron (NM_178499, intron 1 of 13) L3|LINE|CR1 21820 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 438-62 chr12 6968730 6969043 + 2 NA intron (NM_001144831, intron 3 of 8) intron (NM_001144831, intron 3 of 8) -1280 NR_003010 677777 Hs.689636 NR_003010 ENSG00000238795 SCARNA12 U89 small Cajal body-specific RNA 12 ncRNA 297-368 chr5 53790817 53791047 + 2 NA intron (NR_147168, intron 1 of 3) Tigger13a|DNA|TcMar-Tigger 28750 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 276-57 chr10 60544297 60544488 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 28564 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 381-73 chr11 56414025 56414348 + 2 NA TTS (NR_145506) TTS (NR_145506) 1589 NM_001348230 79482 NM_001348230 ENSG00000272987 OR5AL1 OR5AL1P olfactory receptor family 5 subfamily AL member 1 (gene/pseudogene) protein-coding 253-123 chr13 95430144 95430292 + 2 NA Intergenic L1ME3E|LINE|L1 -3381 NM_001160100 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|HELIX|OSP-L|OSPL claudin 10 protein-coding 512-201 chr4 174418602 174419027 + 2 NA Intergenic Intergenic -4981 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 136-25 chr14 87154483 87154575 + 2 NA Intergenic Intergenic 248751 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 404-315 chr8 87493531 87493840 + 2 NA Intergenic Intergenic 380330 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 452-169 chr3 89723700 89724047 + 2 NA Intergenic Intergenic 616252 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 326-210 chr18 39251794 39251986 + 2 NA intron (NR_024391, intron 3 of 3) L1M2|LINE|L1 370285 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 350-246 chr2 143984816 143984995 + 2 NA intron (NM_001354353, intron 7 of 9) LTR1E|LTR|ERV1 47838 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 325-583 chrX 76655428 76655634 + 2 NA Intergenic Intergenic 227821 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 322-310 chr22 24876988 24877185 + 2 NA intron (NM_001098498, intron 13 of 23) MLT1I|LTR|ERVL-MaLR 69609 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 828-16 chr14 53280443 53281010 + 2 NA Intergenic AluJr|SINE|Alu 127372 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 472-139 chr19 12465213 12465494 + 2 NA exon (NM_152601, exon 4 of 4) exon (NM_152601, exon 4 of 4) 19463 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 176-20 chr12 30528167 30528326 + 2 NA Intergenic Intergenic 148998 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 501-226 chr6 55461395 55461746 + 2 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 117644 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 367-273 chr3 17738277 17738575 + 2 NA intron (NM_001349076, intron 1 of 22) MIR|SINE|MIR 2481 NM_014744 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 551-64 chr15 91646954 91647358 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 183817 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 405-138 chr2 66982908 66983174 + 2 NA Intergenic Intergenic -60551 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 165-95 chr4 175394987 175395115 + 2 NA Intergenic MIR|SINE|MIR 392625 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 352-374 chr4 82022298 82022490 + 2 NA Intergenic L1PA3|LINE|L1 351597 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 395-284 chr5 169245556 169245877 + 2 NA intron (NM_003062, intron 2 of 35) intron (NM_003062, intron 2 of 35) 17978 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 363-438 chr8 74170628 74170879 + 2 NA Intergenic Intergenic 150608 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 304-371 chr4 30792508 30792689 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 72229 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 304-421 chr5 62752172 62752337 + 2 NA Intergenic Intergenic 173435 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 398-111 chr14 83941505 83941818 + 2 NA Intergenic Intergenic 1299029 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 417-201 chr4 67227201 67227435 + 2 NA Intergenic L1PA13|LINE|L1 194682 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 485-34 chr10 74651313 74651666 + 2 NA intron (NM_001369124, intron 8 of 9) intron (NM_001369124, intron 8 of 9) -122165 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 306-179 chr16 6752884 6753116 + 2 NA intron (NM_018723, intron 3 of 15) A-rich|Low_complexity|Low_complexity -20809 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 231-279 chr5 43882255 43882451 + 2 NA Intergenic L2a|LINE|L2 -279123 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 298-105 chr13 36622324 36622595 + 2 NA Intergenic Intergenic -51561 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 196-36 chr10 95067464 95067618 + 2 NA exon (NM_001198853, exon 2 of 9) exon (NM_001198853, exon 2 of 9) 1956 NM_001198855 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 572-47 chr13 50775435 50775836 + 2 NA intron (NM_198989, intron 1 of 1) intron (NM_198989, intron 1 of 1) -32220 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 636-31 chr12 71103585 71104042 + 2 NA Intergenic Intergenic 53996 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 429-92 chr14 69940336 69940651 + 2 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -37640 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 265-27 chr10 16372122 16372324 + 2 NA Intergenic L1ME2z|LINE|L1 -64720 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 453-93 chr17 71384587 71384994 + 2 NA Intergenic Intergenic -182611 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 221-311 chr8 130415347 130415470 + 2 NA intron (NM_001362925, intron 1 of 29) AluJr|SINE|Alu 28252 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 533-148 chr4 32730040 32730408 + 2 NA Intergenic L1MA5|LINE|L1 379186 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 518-137 chr2 102574601 102575003 + 2 NA Intergenic L1MA5|LINE|L1 -44751 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 374-7 chr1 80782965 80783317 + 2 NA Intergenic L1PA15|LINE|L1 141854 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 406-202 chr4 31712676 31712977 + 2 NA Intergenic L2a|LINE|L2 206282 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 226-89 chr14 52997652 52997801 + 2 NA Intergenic Intergenic -46629 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 345-483 chr7 15689846 15690069 + 2 NA intron (NR_110094, intron 1 of 1) intron (NR_110094, intron 1 of 1) 1579 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 300-148 chr16 80890634 80890835 + 2 NA intron (NR_131948, intron 1 of 2) MER63C|DNA|hAT-Blackjack 1862 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 447-92 chr16 54682013 54682440 + 2 NA Intergenic Intergenic 166007 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 291-360 chr5 93330126 93330277 + 2 NA Intergenic Intergenic 241142 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 310-169 chr16 35464980 35465175 + 2 NA Intergenic Intergenic 15519 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 238-346 chr7 4570477 4570648 + 2 NA Intergenic AluJb|SINE|Alu -111733 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 463-206 chr4 34169087 34169419 + 2 NA intron (NR_147184, intron 2 of 3) L1ME2|LINE|L1 100494 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 324-197 chr16 26345331 26345519 + 2 NA Intergenic AluJr|SINE|Alu 320188 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 245-323 chr7 29026812 29027022 + 2 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 46950 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 213-219 chr5 3897622 3897803 + 2 NA Intergenic L1MCa|LINE|L1 301880 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 380-378 chr8 14924268 14924594 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -70921 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 360-148 chr15 100474062 100474389 + 2 NA intron (NM_001290341, intron 10 of 13) L1MB8|LINE|L1 70061 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 267-302 chr4 131636481 131636682 + 2 NA Intergenic L1MA2|LINE|L1 -128257 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 302-199 chr2 21229523 21229727 + 2 NA Intergenic MIRb|SINE|MIR 105639 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 456-8 chr1 78765943 78766307 + 2 NA Intergenic L1M1|LINE|L1 116294 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 255-301 chr4 97178415 97178596 + 2 NA Intergenic Intergenic -188421 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 259-298 chr4 144827823 144828031 + 2 NA Intergenic HAL1|LINE|L1 181771 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 535-122 chr2 50636546 50637032 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 59473 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 375-165 chr17 53401305 53401532 + 2 NA Intergenic L1MEc|LINE|L1 415913 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 393-187 chr2 215217317 215217563 + 2 NA Intergenic Intergenic -78814 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 399-278 chr7 27370619 27370913 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie -123537 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 289-112 chr12 79566942 79567180 + 2 NA Intergenic Intergenic 123519 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 655-124 chr8 107727455 107727980 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -229799 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 470-273 chr8 112152111 112152470 + 2 NA Intergenic Intergenic -491203 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 348-27 chr1 165061235 165061560 + 2 NA Intergenic L2a|LINE|L2 -286756 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 230-336 chr6 166595865 166596052 + 2 NA intron (NM_001006932, intron 2 of 21) intron (NM_001006932, intron 2 of 21) 31293 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 232-402 chr9 91916661 91916782 + 2 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 33507 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 157-107 chr5 152056221 152056357 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 97391 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 380-169 chr2 5125368 5125562 + 2 NA Intergenic Intergenic -469243 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 222-138 chr17 70646442 70646641 + 2 NA Intergenic Intergenic 477006 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 428-245 chr5 166174393 166174698 + 2 NA Intergenic Intergenic 751825 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 413-36 chr10 56571376 56571719 + 2 NA Intergenic Intergenic -210274 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 493-168 chr2 157231445 157231807 + 2 NA Intergenic L1MEg|LINE|L1 -26079 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 201-177 chr4 72003866 72003992 + 2 NA Intergenic MER101-int|LTR|ERV1 -27875 NM_004885 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 316-78 chr10 81522913 81523123 + 2 NA Intergenic Intergenic -352176 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 343-578 chr9 28838467 28838717 + 2 NA intron (NM_001354574, intron 2 of 5) L2a|LINE|L2 25114 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 621-66 chr20 39144960 39145406 + 2 NA Intergenic MER117|DNA|hAT-Charlie 79565 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 388-124 chr16 55136353 55136634 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -188066 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 350-569 chrX 58407327 58407626 + 2 NA Intergenic ALR/Alpha|Satellite|centr -496843 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 284-327 chr5 101484138 101484394 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -580984 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 192-184 chr7 8569292 8569424 + 2 NA intron (NM_152745, intron 2 of 2) L1MC5a|LINE|L1 135749 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 191-87 chr18 64717975 64718126 + 2 NA Intergenic Intergenic -457995 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 366-372 chr6 42168693 42168934 + 2 NA intron (NM_001319061, intron 2 of 5) LTR33|LTR|ERVL 13407 NM_001370581 114841037 Hs.92858 NM_001370581 LOC114841037 - Uncharacterized protein 114841037 protein-coding 243-422 chr7 63171315 63171486 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 132656 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 239-72 chr12 27747611 27747784 + 2 NA intron (NM_021821, intron 7 of 7) intron (NM_021821, intron 7 of 7) 23885 NM_001146221 100287284 NM_001146221 ENSG00000205693 MANSC4 - MANSC domain containing 4 protein-coding 234-383 chr8 51611867 51612034 + 2 NA intron (NM_144651, intron 2 of 22) intron (NM_144651, intron 2 of 22) 197495 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 407-325 chr8 109425545 109425875 + 2 NA intron (NM_177531, intron 24 of 77) A-rich|Low_complexity|Low_complexity 63249 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 522-87 chr14 87412549 87412894 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie 242573 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 302-166 chr17 33942436 33942727 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 214225 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 113-34 chr21 19050267 19050341 + 2 NA Intergenic MER67B|LTR|ERV1 -290492 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 337-571 chr9 24160727 24161006 + 2 NA Intergenic L1ME3|LINE|L1 -310265 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 347-202 chr2 37538850 37539070 + 2 NA Intergenic L3|LINE|CR1 133239 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 515-106 chr2 37146884 37147284 + 2 NA intron (NM_002759, intron 3 of 16) intron (NM_002759, intron 3 of 16) 738 NM_001135652 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 328-476 chr5 138688674 138688962 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 64491 NR_134245 105379194 Hs.445981 NR_134244 ENSG00000253404 LOC105379194 - uncharacterized LOC105379194 ncRNA 401-32 chr10 62101042 62101380 + 2 NA Intergenic Intergenic 51854 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 776-23 chr19 57573125 57573602 + 2 NA exon (NM_017879, exon 4 of 4) exon (NM_017879, exon 4 of 4) 5548 NM_017879 55659 Hs.247711 NM_017879 ENSG00000083817 ZNF416 - zinc finger protein 416 protein-coding 462-122 chr19 12346886 12347244 + 2 NA 3' UTR (NM_030824, exon 6 of 6) 3' UTR (NM_030824, exon 6 of 6) -13432 NM_001363608 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 423-264 chr7 41664824 41665223 + 2 NA Intergenic LTR37A|LTR|ERV1 -28896 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 314-428 chr4 66030060 66030259 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -246665 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 488-185 chr4 30039898 30040283 + 2 NA Intergenic Intergenic -680279 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 325-72 chr10 77462489 77462711 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 111728 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 233-68 chr11 108596408 108596579 + 2 NA Intergenic L2c|LINE|L2 -2725 NM_015065 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 274-235 chr20 23709694 23709839 + 2 NA Intergenic Intergenic -20741 NM_001899 1472 Hs.654549 NM_001899 ENSG00000101441 CST4 - cystatin S protein-coding 169-100 chr5 105294371 105294508 + 2 NA Intergenic Intergenic 194965 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 380-353 chr6 170252288 170252556 + 2 NA Intergenic Intergenic 10147 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 550-242 chr9 29964587 29964944 + 2 NA Intergenic Intergenic 443689 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 180-149 chr6 56728129 56728273 + 2 NA intron (NM_001144770, intron 3 of 94) intron (NM_001144770, intron 3 of 94) -85312 NM_001723 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 392-329 chr8 108013008 108013396 + 2 NA intron (NM_178565, intron 2 of 5) intron (NM_178565, intron 2 of 5) 68737 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 309-334 chr3 4958318 4958519 + 2 NA intron (NR_125915, intron 1 of 3) intron (NR_125915, intron 1 of 3) -21019 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 256-192 chr2 38315998 38316234 + 2 NA intron (NM_001135673, intron 4 of 12) intron (NM_001135673, intron 4 of 12) 60414 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 160-56 chr21 37765824 37765930 + 2 NA intron (NM_002240, intron 2 of 3) MER63C|DNA|hAT-Blackjack 150580 NM_002240 3763 Hs.626242 NM_002240 ENSG00000157542 KCNJ6 BIR1|GIRK-2|GIRK2|KATP-2|KATP2|KCNJ7|KIR3.2|KPLBS|hiGIRK2 potassium voltage-gated channel subfamily J member 6 protein-coding 473-141 chr2 134565322 134565654 + 2 NA intron (NM_030923, intron 2 of 7) AluSx1|SINE|Alu 153512 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 538-164 chr4 11132616 11133035 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -236002 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 328-68 chr10 122763805 122763999 + 2 NA intron (NR_003570, intron 5 of 27) intron (NR_003570, intron 5 of 27) 7208 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 310-375 chr4 91974033 91974251 + 2 NA Intergenic L1MA4|LINE|L1 303160 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 359-360 chr4 54669530 54669877 + 2 NA intron (NM_000222, intron 1 of 20) intron (NM_000222, intron 1 of 20) 11775 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 475-13 chr1 195213128 195213501 + 2 NA Intergenic Intergenic 875401 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 285-404 chr8 46077012 46077268 + 2 NA Intergenic ALR/Alpha|Satellite|centr 540503 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 480-147 chr2 75209598 75210026 + 2 NA Intergenic L1PA12|LINE|L1 -10292 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 539-98 chr18 42954494 42954881 + 2 NA intron (NM_001272077, intron 3 of 5) intron (NM_001272077, intron 3 of 5) 160998 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 291-244 chr2 194637075 194637362 + 2 NA Intergenic L1PA15|LINE|L1 -93377 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 329-201 chr16 12534980 12535166 + 2 NA intron (NM_032167, intron 20 of 20) intron (NM_032167, intron 20 of 20) -185248 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 208-24 chr10 69307645 69307795 + 2 NA intron (NM_033500, intron 5 of 21) MIR|SINE|MIR -8134 NM_033496 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 545-2 chr1 29814346 29814722 + 2 NA Intergenic AluJb|SINE|Alu 223078 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 369-317 chr5 27503279 27503583 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 31139 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 471-131 chr2 56231290 56231536 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -45643 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 275-345 chr7 101635294 101635542 + 2 NA Intergenic MLT2A2|LTR|ERVL -6122 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 254-174 chr19 37638236 37638401 + 2 NA intron (NM_001320666, intron 5 of 5) intron (NM_001320666, intron 5 of 5) 17147 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 171-135 chr8 64127209 64127346 + 2 NA intron (NR_125826, intron 4 of 4) MLT2A1|LTR|ERVL 241281 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 675-96 chr8 80944071 80944593 + 2 NA Intergenic AluJr|SINE|Alu -69551 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 519-83 chr18 28652778 28653162 + 2 NA Intergenic Intergenic -475840 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 354-26 chr1 181925100 181925346 + 2 NA Intergenic AluJb|SINE|Alu 136489 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 626-59 chr2 13637682 13638161 + 2 NA Intergenic Intergenic -630908 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 317-473 chr8 26299399 26299666 + 2 NA intron (NM_001177591, intron 2 of 9) intron (NM_001177591, intron 2 of 9) 6316 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 381-48 chr10 47083011 47083260 + 2 NA Intergenic Intergenic 171413 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 287-23 chr1 159267459 159267638 + 2 NA Intergenic L1ME3Cz|LINE|L1 -22166 NM_002001 2205 Hs.897 NM_002001 ENSG00000179639 FCER1A FCE1A|FcERI Fc fragment of IgE receptor Ia protein-coding 414-56 chr11 132361810 132362064 + 2 NA Intergenic Intergenic 77635 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 497-301 chr9 100940986 100941334 + 2 NA Intergenic Intergenic -87567 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 447-175 chr3 89480246 89480492 + 2 NA 3' UTR (NM_005233, exon 17 of 17) 3' UTR (NM_005233, exon 17 of 17) 372748 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 302-90 chr11 114694631 114694809 + 2 NA intron (NM_182495, intron 2 of 5) L1MCa|LINE|L1 16193 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 356-310 chr22_KI270879v1_alt 259127 259474 + 2 NA intron (NR_003081, intron 2 of 3) intron (NR_003081, intron 2 of 3) -7976 NM_001354469 391322 Hs.678440 NM_001144931 LOC391322 - D-dopachrome tautomerase-like protein-coding 291-461 chr8 103315120 103315320 + 2 NA intron (NM_001317796, intron 2 of 5) L2|LINE|L2 6242 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 190-174 chr8 72593049 72593178 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 55888 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 235-149 chr18 68574192 68574379 + 2 NA Intergenic Intergenic 140823 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 200-156 chr20 31403653 31403800 + 2 NA Intergenic MIRb|SINE|MIR 2489 NM_001011878 245934 Hs.272294 NM_001011878 ENSG00000204548 DEFB121 DEFB21|ESC42RELC defensin beta 121 protein-coding 285-321 chr5 9233203 9233382 + 2 NA intron (NM_003966, intron 6 of 22) intron (NM_003966, intron 6 of 22) -179397 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 346-122 chr13 83179388 83179679 + 2 NA Intergenic L1ME3A|LINE|L1 702860 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 233-372 chr8 81757383 81757549 + 2 NA intron (NM_152284, intron 3 of 4) intron (NM_152284, intron 3 of 4) 25018 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 421-49 chr12 14742491 14742854 + 2 NA Intergenic Intergenic 28459 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 276-405 chr6 73706786 73707057 + 2 NA intron (NM_001159588, intron 2 of 31) intron (NM_001159588, intron 2 of 31) 10718 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 596-122 chr3 97212370 97212835 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -227005 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 338-299 chr20 51287885 51288155 + 2 NA Intergenic Intergenic 164957 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 702-36 chr17 82746436 82746821 + 2 NA intron (NM_022158, intron 4 of 5) AluSq2|SINE|Alu -5437 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 289-504 chrX 88544711 88544931 + 2 NA Intergenic L1MC1|LINE|L1 -202404 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 445-26 chr10 63153139 63153501 + 2 NA intron (NM_001282405, intron 2 of 2) intron (NM_001282405, intron 2 of 2) 19992 NM_030759 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 329-468 chr5 107993566 107993801 + 2 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -322746 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 339-628 chrX 89024191 89024432 + 2 NA Intergenic LTR46|LTR|ERV1 277086 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 487-138 chr2 49864052 49864347 + 2 NA Intergenic Intergenic 110004 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 230-115 chr14 65314216 65314391 + 2 NA Intergenic Intergenic 20880 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 279-127 chr16 63239792 63240025 + 2 NA Intergenic Intergenic -1203470 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 220-228 chr3 76602442 76602582 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -437587 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 412-283 chr6 97638570 97638834 + 2 NA intron (NR_110757, intron 3 of 4) intron (NR_110757, intron 3 of 4) 333116 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 309-576 chr9 35439397 35439674 + 2 NA intron (NR_003581, intron 5 of 17) intron (NR_003581, intron 5 of 17) 32780 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 231-90 chr14 30233872 30234091 + 2 NA Intergenic Intergenic -306134 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 188-21 chr11 2660321 2660476 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 39600 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 434-325 chrX 80916362 80916711 + 2 NA Intergenic L1MA9|LINE|L1 -106659 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 508-103 chr2 82235851 82236161 + 2 NA Intergenic L3|LINE|CR1 -620797 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 330-259 chr2 55080425 55080617 + 2 NA 5' UTR (NM_001321904, exon 2 of 10) 5' UTR (NM_001321904, exon 2 of 10) -29249 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 499-236 chr7 3504421 3504796 + 2 NA intron (NM_152744, intron 1 of 44) L1M4|LINE|L1 203356 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 359-340 chr3 178990514 178990776 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 81164 NM_152240 64393 Hs.371609 NM_022470 ENSG00000172667 ZMAT3 PAG608|WIG-1|WIG1 zinc finger matrin-type 3 protein-coding 634-113 chr4 88330151 88330588 + 2 NA non-coding (NR_134236, exon 5 of 5) non-coding (NR_134236, exon 5 of 5) 45439 NR_134238 105369192 Hs.733660 NR_134236 ENSG00000246375 PPM1K-DT - PPM1K divergent transcript ncRNA 485-128 chr2 37821447 37821776 + 2 NA Intergenic Intergenic 8100 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 287-88 chr11 40958565 40958840 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 500934 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 126-48 chr5 6892604 6892705 + 2 NA Intergenic LTR79|LTR|ERVL -64733 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 289-240 chr2 123009571 123009832 + 2 NA Intergenic L1M2|LINE|L1 63780 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 365-338 chr5 169359819 169360002 + 2 NA Intergenic L1PB4|LINE|L1 -58771 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 311-287 chr2 230130378 230130627 + 2 NA Intergenic Intergenic -61578 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 559-88 chr2 18624200 18624601 + 2 NA Intergenic MIRb|SINE|MIR -34820 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 396-295 chr5 133311478 133311844 + 2 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 116045 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 745-75 chr8 86595245 86595766 + 2 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 81070 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 328-506 chr6 83369189 83369436 + 2 NA intron (NM_002395, intron 3 of 13) intron (NM_002395, intron 3 of 13) 61739 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 273-183 chr18 9346409 9346582 + 2 NA intron (NM_020648, intron 2 of 4) L1MC2|LINE|L1 11722 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 227-28 chr1 246250358 246250522 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 166972 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 365-27 chr1 194641544 194641754 + 2 NA Intergenic L1PA15|LINE|L1 1336904 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 274-187 chr19 44616845 44617092 + 2 NA intron (NM_001205280, intron 1 of 4) AluJr|SINE|Alu 3405 NM_001205280 147710 Hs.512509 NM_001205280 ENSG00000216588 IGSF23 - immunoglobulin superfamily member 23 protein-coding 237-124 chr15 86373828 86373983 + 2 NA intron (NM_152336, intron 17 of 24) MIRb|SINE|MIR -56937 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 130-9 chr10 57090719 57090819 + 2 NA Intergenic Intergenic 213790 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 329-56 chr10 60530304 60530585 + 2 NA intron (NM_001204403, intron 2 of 43) MIR|SINE|MIR 42512 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 268-205 chr2 118959637 118959838 + 2 NA intron (NM_006770, intron 1 of 16) L1PB1|LINE|L1 17568 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 117-10 chr14 55907655 55907714 + 2 NA Intergenic Intergenic -111010 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 167-45 chr18 4054471 4054607 + 2 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 92186 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 181-136 chr5 155469093 155469239 + 2 NA Intergenic Intergenic 455411 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 804-40 chr21 21749018 21749636 + 2 NA intron (NR_109958, intron 2 of 4) intron (NR_109958, intron 2 of 4) 2342 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 271-110 chr12 128198067 128198325 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -69207 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 232-214 chr20 36347971 36348175 + 2 NA intron (NM_001365621, intron 1 of 12) MLT1J|LTR|ERVL-MaLR 41734 NM_001365621 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 405-243 chr5 38857604 38857806 + 2 NA intron (NM_003999, intron 1 of 17) AluSx|SINE|Alu 11693 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 389-115 chr15 84998480 84998742 + 2 NA intron (NM_173454, intron 1 of 20) intron (NM_173454, intron 1 of 20) 16637 NM_173454 5151 Hs.9333 NM_002605 ENSG00000073417 PDE8A HsT19550 phosphodiesterase 8A protein-coding 437-73 chr14 49013134 49013409 + 2 NA Intergenic Intergenic 573109 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 295-326 chr4 37306151 37306389 + 2 NA intron (NM_001144990, intron 1 of 6) L1MA5|LINE|L1 61527 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 347-284 chr21 30355600 30355921 + 2 NA Intergenic Intergenic -7154 NM_181624 337963 Hs.553688 NM_181624 ENSG00000186980 KRTAP23-1 KAP23.1 keratin associated protein 23-1 protein-coding 154-32 chr14 57677820 57677936 + 2 NA intron (NM_001352014, intron 1 of 9) L1M5|LINE|L1 -184021 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 556-61 chr14 57783037 57783427 + 2 NA intron (NR_159373, intron 1 of 10) Tigger2|DNA|TcMar-Tigger 81767 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 159-12 chr10 56219754 56219881 + 2 NA Intergenic Intergenic 141442 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 235-349 chr8 50932865 50933069 + 2 NA Intergenic L1ME1|LINE|L1 768836 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 148-69 chr5 11826524 11826634 + 2 NA intron (NM_001288717, intron 1 of 20) L1ME1|LINE|L1 77867 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 339-125 chr12 36673469 36673679 + 2 NA Intergenic L1HS|LINE|L1 -1643200 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 379-63 chr11 93381229 93381509 + 2 NA intron (NM_181645, intron 7 of 13) intron (NM_181645, intron 7 of 13) 50652 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 312-76 chr11 27164800 27165095 + 2 NA intron (NR_125767, intron 2 of 4) AluSz|SINE|Alu 53821 NR_125768 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 252-241 chr21 35441908 35442104 + 2 NA intron (NR_073512, intron 2 of 2) intron (NR_073512, intron 2 of 2) 138758 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 293-90 chr12 87967509 87967740 + 2 NA Intergenic Intergenic 61777 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 321-402 chr4 480367 480553 + 2 NA intron (NM_133474, intron 1 of 2) L1MB2|LINE|L1 -6251 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 140-47 chr3 72729545 72729635 + 2 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -65341 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 151-59 chr4 121986509 121986607 + 2 NA Intergenic Intergenic -34498 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 587-94 chr21 24037185 24037635 + 2 NA Intergenic L1MEf|LINE|L1 283967 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 312-527 chr8 107246561 107246757 + 2 NA Intergenic Intergenic 89856 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 299-83 chr11 89479797 89480034 + 2 NA intron (NM_001291929, intron 1 of 16) MER8|DNA|TcMar-Tigger 10845 NM_001291929 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 358-127 chr14 84046823 84047073 + 2 NA Intergenic Intergenic -1224984 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 324-48 chr10 13565261 13565549 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -21560 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 480-126 chr18 61676738 61677202 + 2 NA Intergenic LTR8|LTR|ERV1 -71206 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 247-106 chr13 92341974 92342162 + 2 NA intron (NR_120382, intron 2 of 2) L2|LINE|L2 10139 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 219-215 chr21 23483304 23483465 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -98549 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 333-374 chr3 185409426 185409665 + 2 NA intron (NM_004721, intron 1 of 13) L1MA5A|LINE|L1 46409 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 157-60 chr2 60240398 60240552 + 2 NA Intergenic L1ME1|LINE|L1 142561 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 381-161 chr19 21387423 21387619 + 2 NA 3' UTR (NM_001355237, exon 5 of 5) 3' UTR (NM_001355237, exon 5 of 5) -9612 NM_175910 284443 Hs.656558 NM_145326 ENSG00000196268 ZNF493 - zinc finger protein 493 protein-coding 322-31 chr1 173398220 173398388 + 2 NA intron (NR_037845, intron 2 of 2) ERVL-B4-int|LTR|ERVL 63058 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 522-166 chr3 472856 473199 + 2 NA Intergenic Intergenic -87232 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 533-198 chr6 63175625 63176125 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 144102 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 490-196 chr4 40293500 40293823 + 2 NA Intergenic Intergenic -13524 NR_121641 101060498 Hs.351492 NR_121640 ENSG00000249241 LINC02265 - long intergenic non-protein coding RNA 2265 ncRNA 349-484 chr7 138243296 138243499 + 2 NA Intergenic Intergenic 119639 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 232-205 chr2 212306354 212306572 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 119897 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 685-101 chrX 99064766 99065176 + 2 NA Intergenic Intergenic 1345302 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 339-417 chr4 95808831 95809076 + 2 NA Intergenic Intergenic -31140 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 317-86 chr11 78584629 78584857 + 2 NA Intergenic AluJb|SINE|Alu -9879 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 676-27 chr12 120402789 120403246 + 2 NA Intergenic AluJb|SINE|Alu -33853 NM_002442 4440 Hs.158311 NM_002442 ENSG00000135097 MSI1 - musashi RNA binding protein 1 protein-coding 312-261 chr2 130878984 130879237 + 2 NA intron (NM_001367493, intron 1 of 13) intron (NM_001367493, intron 1 of 13) 42196 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 125-61 chr6 140277818 140277910 + 2 NA Intergenic L1M5|LINE|L1 72612 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 345-49 chr10 23184651 23184987 + 2 NA Intergenic Intergenic -7493 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 324-538 chr8 101946093 101946267 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -38252 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 614-122 chr7 110571967 110572453 + 2 NA Intergenic Intergenic -518796 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 360-317 chr3 169815402 169815600 + 2 NA Intergenic L1M1|LINE|L1 -2597 NM_001363888 151827 Hs.591289 NM_153353 ENSG00000171757 LRRC34 - leucine rich repeat containing 34 protein-coding 227-240 chr4 20656748 20656903 + 2 NA Intergenic L1PB2|LINE|L1 -39457 NR_133933 133015 Hs.479298 NM_145048 ENSG00000163138 PACRGL C4orf28 parkin coregulated like protein-coding 329-268 chr2 44792714 44793021 + 2 NA Intergenic L1MEj|LINE|L1 146021 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 314-260 chr2 5813226 5813467 + 2 NA promoter-TSS (NR_146954) promoter-TSS (NR_146954) -750 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 242-185 chr2 74880645 74880858 + 2 NA intron (NM_000189, intron 10 of 17) MIR|SINE|MIR -28380 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 376-183 chr2 62537059 62537379 + 2 NA Intergenic MER61C|LTR|ERV1 -31024 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 305-312 chr20 55133582 55133773 + 2 NA Intergenic Intergenic -289366 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 194-203 chr8 14434632 14434737 + 2 NA intron (NM_001322881, intron 2 of 6) L1PB|LINE|L1 418826 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 204-262 chr7 8623600 8623754 + 2 NA intron (NM_152745, intron 2 of 2) L1MC5a|LINE|L1 190068 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 215-135 chr19 44155940 44156138 + 2 NA intron (NM_006630, intron 5 of 5) intron (NM_006630, intron 5 of 5) -9023 NM_001146220 7769 Hs.145956 NM_015919 ENSG00000167380 ZNF226 - zinc finger protein 226 protein-coding 474-41 chr10 129485819 129486101 + 2 NA intron (NM_002412, intron 1 of 4) intron (NM_002412, intron 1 of 4) 18719 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 701-24 chr14 61311628 61312188 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -9535 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 359-377 chr4 176943641 176943880 + 2 NA Intergenic Intergenic 68058 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 450-120 chr18 75139511 75139826 + 2 NA Intergenic Intergenic 65845 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 398-258 chr5 7208950 7209288 + 2 NA Intergenic Intergenic 60235 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 300-224 chr2 226166342 226166561 + 2 NA intron (NR_046102, intron 4 of 6) intron (NR_046102, intron 4 of 6) 23657 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 216-251 chr4 72981469 72981648 + 2 NA Intergenic LTR37-int|LTR|ERV1 88158 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 482-67 chr12 127732791 127733140 + 2 NA Intergenic Intergenic -77377 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 303-111 chr13 92991146 92991354 + 2 NA Intergenic L1ME4b|LINE|L1 -54091 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 423-317 chrX 7561818 7562156 + 2 NA Intergenic Intergenic -280275 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 267-401 chr7 74716767 74716992 + 2 NA intron (NM_001163636, intron 10 of 33) intron (NM_001163636, intron 10 of 33) 12039 NR_110044 101926943 Hs.654772 NR_110044 ENSG00000232729 LOC101926943 - uncharacterized LOC101926943 ncRNA 472-73 chr13 49780107 49780571 + 2 NA intron (NM_002267, intron 1 of 16) MER58A|DNA|hAT-Charlie 12343 NM_002267 3839 Hs.527919 NM_002267 ENSG00000102753 KPNA3 IPOA4|SRP1|SRP1gamma|SRP4|hSRP1 karyopherin subunit alpha 3 protein-coding 351-181 chr18 1720053 1720264 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -360529 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 498-237 chr6 115169838 115170197 + 2 NA Intergenic Intergenic 473818 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 481-272 chr7 10335363 10335693 + 2 NA Intergenic Intergenic -367148 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 505-74 chr13 79831425 79831811 + 2 NA Intergenic Intergenic 27232 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 336-67 chr10 53334980 53335189 + 2 NA Intergenic Intergenic -563384 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 367-39 chr10 7457415 7457684 + 2 NA Intergenic Intergenic -46063 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 422-186 chr3 74113071 74113424 + 2 NA Intergenic Intergenic 304003 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 723-28 chr18 52689915 52690515 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 350018 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 663-39 chr14 97585751 97586261 + 2 NA Intergenic Intergenic 100652 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 331-76 chr10 130414872 130415155 + 2 NA Intergenic L1MEc|LINE|L1 278604 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 133-76 chr7 109329821 109329900 + 2 NA Intergenic L1PA14|LINE|L1 -445273 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 377-235 chr2 207297671 207297939 + 2 NA Intergenic AluJr4|SINE|Alu -28381 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 331-242 chr2 6503890 6504094 + 2 NA Intergenic Intergenic -128570 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 314-109 chr11 114587707 114587949 + 2 NA intron (NM_017678, intron 2 of 5) HUERS-P3-int|LTR|ERV1 7958 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 329-373 chr3 100518089 100518333 + 2 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 25592 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 280-85 chr12 28828575 28828776 + 2 NA Intergenic L1MEc|LINE|L1 -320603 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 810-22 chr2 65142940 65143621 + 2 NA Intergenic AluSz|SINE|Alu -12979 NM_015543 5861 Hs.310645 NM_004161 ENSG00000138069 RAB1A RAB1|YPT1 RAB1A, member RAS oncogene family protein-coding 274-220 chr2 129663847 129664035 + 2 NA Intergenic L1ME2|LINE|L1 213550 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 314-350 chr21 25240224 25240500 + 2 NA Intergenic L1MB2|LINE|L1 191339 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 229-399 chr8 121079153 121079329 + 2 NA Intergenic Intergenic -267195 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 393-116 chr16 51693083 51693357 + 2 NA Intergenic L1MC3|LINE|L1 -69299 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 360-432 chr7 53973853 53974157 + 2 NA Intergenic L3|LINE|CR1 -162074 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 217-360 chr8 55548155 55548283 + 2 NA Intergenic Intergenic -27241 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 256-208 chr2 115503215 115503425 + 2 NA intron (NM_001321912, intron 5 of 25) intron (NM_001321912, intron 5 of 25) 159505 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 413-26 chr1 228822454 228822663 + 2 NA Intergenic L1MDa|LINE|L1 87079 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 306-257 chr2 166980975 166981132 + 2 NA intron (NM_152381, intron 2 of 10) L1MEf|LINE|L1 92566 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 298-290 chr3 39822235 39822514 + 2 NA intron (NM_001284424, intron 1 of 15) MER30|DNA|hAT-Charlie 12714 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 298 chr1 44162206 44162429 + 2 NA Intergenic L1M4c|LINE|L1 -20686 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 414-76 chr12 121436620 121436954 + 2 NA intron (NM_001005366, intron 21 of 22) L1MEj|LINE|L1 7565 NR_106957 102465665 NR_106957 ENSG00000284402 MIR7107 hsa-mir-7107 microRNA 7107 ncRNA 317-282 chr21 20101004 20101198 + 2 NA Intergenic L1ME1|LINE|L1 157584 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 543-75 chr14 53265576 53265949 + 2 NA Intergenic Intergenic 112408 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 596-176 chr9 24620036 24620408 + 2 NA Intergenic Intergenic -74325 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 214-188 chr20 44295413 44295590 + 2 NA Intergenic Intergenic 15701 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 411-69 chr12 43710974 43711289 + 2 NA Intergenic L2a|LINE|L2 47659 NM_031292 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 284-289 chr4 82737163 82737395 + 2 NA intron (NM_001037582, intron 1 of 4) L1ME4c|LINE|L1 16151 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 129-74 chr8 52359112 52359209 + 2 NA intron (NR_148195, intron 2 of 3) L1M4|LINE|L1 50596 NM_001352884 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 316-204 chr16 71271847 71272054 + 2 NA Intergenic Intergenic 17452 NM_001099642 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 313-444 chr5 114187289 114187476 + 2 NA Intergenic LTR68|LTR|ERV1 -174688 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 191-162 chr5 13312931 13313069 + 2 NA Intergenic Intergenic -280114 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 586-164 chr9 73482168 73482727 + 2 NA Intergenic AluSc|SINE|Alu 330582 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 519-38 chr11 98697290 98697653 + 2 NA Intergenic Intergenic -323478 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 257-42 chr10 59705583 59705825 + 2 NA intron (NM_194298, intron 1 of 5) intron (NM_194298, intron 1 of 5) 4187 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 224-341 chr8 131858363 131858555 + 2 NA Intergenic Intergenic -45634 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 133-88 chrX 81043940 81044049 + 2 NA Intergenic L1MA4A|LINE|L1 157919 NM_030763 79366 Hs.282204 NM_030763 ENSG00000198157 HMGN5 NBP-45|NSBP1 high mobility group nucleosome binding domain 5 protein-coding 367-16 chr1 82712040 82712262 + 2 NA Intergenic Intergenic -191032 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 674-38 chr17 66887132 66887782 + 2 NA 3' UTR (NM_145811, exon 6 of 6) 3' UTR (NM_145811, exon 6 of 6) 52340 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 286-247 chr20 25441293 25441553 + 2 NA intron (NM_021067, intron 5 of 6) intron (NM_021067, intron 5 of 6) 33740 NR_134574 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 IMD55|PSF1 GINS complex subunit 1 protein-coding 319-150 chr14 84304742 84304916 + 2 NA Intergenic AluSx1|SINE|Alu -967103 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 385-286 chr5 3091519 3091785 + 2 NA Intergenic Intergenic -86183 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 393-12 chr1 71282468 71282685 + 2 NA Intergenic MER99|DNA|hAT? 201252 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 343-360 chr3 139336941 139337194 + 2 NA Intergenic L1ME1|LINE|L1 -6927 NM_020191 56945 Hs.745001 NM_020191 ENSG00000175110 MRPS22 C3orf5|COXPD5|GIBT|GK002|MRP-S22|ODG7|RPMS22 mitochondrial ribosomal protein S22 protein-coding 483-91 chr17 56539095 56539491 + 2 NA Intergenic Intergenic -54406 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 254-54 chr11 24756073 24756264 + 2 NA intron (NM_001009909, intron 4 of 11) MER4D|LTR|ERV1 259115 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 463-161 chr20 7059192 7059647 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 194783 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 582-140 chr7 18707168 18707550 + 2 NA intron (NM_058176, intron 11 of 22) L1ME4a|LINE|L1 198089 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 355-320 chr3 53088200 53088421 + 2 NA TTS (NM_052859) TTS (NM_052859) 42125 NM_052859 91869 Hs.631910 NM_052859 ENSG00000163933 RFT1 CDG1N RFT1 homolog protein-coding 316-43 chr1 220434632 220434830 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -93405 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 195-263 chrX 38374987 38375148 + 2 NA intron (NM_000531, intron 3 of 9) L2a|LINE|L2 22463 NM_000531 5009 Hs.117050 NM_000531 ENSG00000036473 OTC OCTD ornithine carbamoyltransferase protein-coding 307-29 chr1 195128442 195128672 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 960158 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 454-94 chr14 76264279 76264729 + 2 NA Intergenic L2b|LINE|L2 -106843 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 472-115 chr16 79176240 79176641 + 2 NA intron (NM_001291997, intron 7 of 7) MLT1J2|LTR|ERVL-MaLR 424297 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 230-182 chr2 146582453 146582595 + 2 NA Intergenic Intergenic -4533 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 225-295 chr5 134338040 134338176 + 2 NA intron (NM_001349366, intron 1 of 8) L1MB8|LINE|L1 28966 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 243-220 chr2 103555751 103555941 + 2 NA Intergenic L1M1|LINE|L1 -571417 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 628-97 chr4 105714427 105714910 + 2 NA intron (NM_001031720, intron 1 of 11) intron (NM_001031720, intron 1 of 11) 3855 NM_001031720 79807 Hs.161429 NM_024751 ENSG00000138780 GSTCD - glutathione S-transferase C-terminal domain containing protein-coding 380-259 chr3 153770445 153770763 + 2 NA Intergenic L1PA15-16|LINE|L1 -8078 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 376-138 chr17 57391975 57392319 + 2 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 131450 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 419-157 chr2 211013632 211013972 + 2 NA Intergenic Intergenic 396231 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 378-14 chr1 82973651 82973991 + 2 NA TTS (NR_110632) TTS (NR_110632) 11101 NR_110632 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 359-141 chr14 47923428 47923727 + 2 NA Intergenic L1MA3|LINE|L1 -128563 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 197-59 chr14 80971770 80971905 + 2 NA intron (NM_001142626, intron 1 of 8) ERVL-E-int|LTR|ERVL 16216 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 308-4 chr1 20130063 20130347 + 2 NA Intergenic L1ME1|LINE|L1 -9118 NM_022819 64600 Hs.302034 NM_022819 ENSG00000158786 PLA2G2F GIIFsPLA2|sPLA2-IIF phospholipase A2 group IIF protein-coding 517-273 chr8 120455098 120455556 + 2 NA intron (NM_022045, intron 5 of 21) intron (NM_022045, intron 5 of 21) 9908 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 270-46 chr10 110538769 110538978 + 2 NA Intergenic L1MA4|LINE|L1 -28818 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 429-240 chr5 91165612 91165976 + 2 NA Intergenic L1MB1|LINE|L1 148608 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 242-435 chr9 91921390 91921535 + 2 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 28766 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 588-115 chr4 127314610 127314978 + 2 NA Intergenic L1MB1|LINE|L1 -318163 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 328-301 chr2 222786749 222786931 + 2 NA Intergenic L1MB7|LINE|L1 -74196 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 515-109 chr2 45374854 45375154 + 2 NA Intergenic L1MB8|LINE|L1 -120063 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 251-32 chr10 47436094 47436255 + 2 NA Intergenic L1PA17|LINE|L1 -21699 NR_134499 105378292 Hs.131331 NR_134499 LOC105378292 - uncharacterized LOC105378292 ncRNA 409-244 chr5 35603495 35603834 + 2 NA Intergenic L1PB2|LINE|L1 -14199 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 537-93 chr18 69345475 69345923 + 2 NA Intergenic Intergenic -55189 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 205-196 chr3 194934778 194934909 + 2 NA Intergenic Intergenic -159745 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 318-370 chr3 130294055 130294329 + 2 NA Intergenic L1M5|LINE|L1 -51324 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 399-216 chr3 148521037 148521319 + 2 NA Intergenic L1M1|LINE|L1 -176693 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 377-240 chr2 233741968 233742280 + 2 NA TTS (NM_001001394) TTS (NM_001001394) 1874 NM_001001394 414061 Hs.725533 NM_001001394 DNAJB3 HCG3 DnaJ heat shock protein family (Hsp40) member B3 protein-coding 455-184 chr4 68007535 68007811 + 2 NA Intergenic L1MDa|LINE|L1 -10234 NR_033737 644759 Hs.646883 NR_033737 ENSG00000229009 TMPRSS11GP - transmembrane serine protease 11G, pseudogene pseudo 364-282 chr3 102848314 102848547 + 2 NA Intergenic (TGTTTT)n|Simple_repeat|Simple_repeat 413415 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 292-278 chr3 26941800 26941970 + 2 NA Intergenic Intergenic 247328 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 272-52 chr10 67191006 67191199 + 2 NA intron (NM_001127384, intron 6 of 17) L1MC1|LINE|L1 178836 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 150-50 chr2 58818649 58818753 + 2 NA intron (NR_033873, intron 2 of 13) intron (NR_033873, intron 2 of 13) 297948 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 145-92 chr9 121193233 121193315 + 2 NA intron (NM_016322, intron 2 of 7) intron (NM_016322, intron 2 of 7) -8209 NM_001353053 2934 Hs.522373 NM_000177 ENSG00000148180 GSN ADF|AGEL gelsolin protein-coding 218-318 chr8 61955529 61955686 + 2 NA Intergenic HAL1ME|LINE|L1 65768 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 137-52 chr2 204372255 204372338 + 2 NA Intergenic Intergenic -173179 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 483-41 chr11 81374491 81374937 + 2 NA Intergenic L1M3|LINE|L1 516122 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 208-91 chr17 33822034 33822212 + 2 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR -288363 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 184-176 chr8 121360399 121360541 + 2 NA Intergenic L1MEb|LINE|L1 -278876 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 195-196 chr5 74307899 74308076 + 2 NA intron (NR_105009, intron 1 of 2) intron (NR_105009, intron 1 of 2) 338 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 464-189 chr4 127550782 127551185 + 2 NA Intergenic (TTTAATT)n|Simple_repeat|Simple_repeat -81974 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 348-511 chr8 40603770 40604000 + 2 NA intron (NM_001135731, intron 4 of 5) AluY|SINE|Alu -260522 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 304-505 chr8 56266460 56266738 + 2 NA Intergenic HAL1M8|LINE|L1 54177 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 267-100 chr13 94812106 94812298 + 2 NA intron (NR_110754, intron 2 of 4) intron (NR_110754, intron 2 of 4) 51261 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 546-116 chr2 145828105 145828572 + 2 NA Intergenic Intergenic -758719 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 573-19 chr10 12314896 12315286 + 2 NA Intergenic Intergenic -34456 NM_020397 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 292-267 chr21 36682426 36682654 + 2 NA Intergenic L1MEg|LINE|L1 -16575 NM_005069 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 SIM bHLH transcription factor 2 protein-coding 400-340 chr8 83207507 83207761 + 2 NA Intergenic Intergenic -196124 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 262-449 chr9 32727217 32727369 + 2 NA Intergenic Intergenic -56247 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 233-13 chr1 153418173 153418355 + 2 NA intron (NM_176823, intron 2 of 2) intron (NM_176823, intron 2 of 2) 1744 NM_176823 338324 Hs.442337 NM_176823 ENSG00000184330 S100A7A NICE-2|NICE2|S100A15|S100A7L1|S100A7f S100 calcium binding protein A7A protein-coding 280-78 chr11 113159625 113159804 + 2 NA intron (NM_181351, intron 1 of 18) L1PA4|LINE|L1 114187 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 272-39 chr10 25304594 25304850 + 2 NA intron (NM_020752, intron 2 of 10) MIRb|SINE|MIR -128446 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 535-253 chr8 137069294 137069703 + 2 NA Intergenic AluSz|SINE|Alu 344090 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 356-210 chr18 62462573 62462822 + 2 NA Intergenic Intergenic -60328 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 439-175 chr3 19011610 19011990 + 2 NA Intergenic MIRc|SINE|MIR -136710 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 538-35 chr11 21338261 21338716 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 668902 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 665-38 chr15 101519036 101519514 + 2 NA Intergenic L1MD|LINE|L1 -29291 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 335-2 chr1 41762909 41763185 + 2 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 155875 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 358-134 chr15 44371794 44372057 + 2 NA intron (NR_157849, intron 7 of 9) MIRb|SINE|MIR -55704 NM_016396 51496 Hs.497967 NM_016396 ENSG00000137770 CTDSPL2 HSPC058|HSPC129 CTD small phosphatase like 2 protein-coding 290-278 chr3 46769144 46769376 + 2 NA Intergenic L1MA9|LINE|L1 -12405 NR_160552 100288960 NR_160552 PRSS43P PRSS43|TESSP3 serine protease 43, pseudogene pseudo 547-152 chr4 16143048 16143559 + 2 NA Intergenic L1MB8|LINE|L1 -59280 NM_006017 8842 Hs.614734 NM_006017 ENSG00000007062 PROM1 AC133|CD133|CORD12|MCDR2|MSTP061|PROML1|RP41|STGD4 prominin 1 protein-coding 454-248 chr4 177399667 177400048 + 2 NA Intergenic L2a|LINE|L2 42580 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 207-69 chr12 126137258 126137407 + 2 NA Intergenic Intergenic 41340 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 574-103 chr3 28363520 28364015 + 2 NA intron (NM_001324170, intron 1 of 6) MER74A|LTR|ERVL 14618 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 395-197 chr20 42149941 42150234 + 2 NA intron (NM_133170, intron 18 of 31) intron (NM_133170, intron 18 of 31) -531710 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 289-314 chr3 118900302 118900577 + 2 NA TTS (NM_001353318) TTS (NM_001353318) -42637 NR_046230 100506765 Hs.660823 NR_046230 ENSG00000239877 IGSF11-AS1 - IGSF11 antisense RNA 1 ncRNA 681-66 chr5 94037321 94037831 + 2 NA intron (NR_028080, intron 3 of 8) MIRc|SINE|MIR 74087 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 360-484 chr9 22011392 22011686 + 2 NA intron (NR_047533, intron 1 of 3) MIRb|SINE|MIR -2226 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 188-200 chr8 28741301 28741420 + 2 NA intron (NM_001440, intron 5 of 6) Charlie7|DNA|hAT-Charlie 39859 NR_073469 2137 Hs.491354 NM_001440 ENSG00000012232 EXTL3 BOTV|EXTL1L|EXTR1|ISDNA|REGR|RPR exostosin like glycosyltransferase 3 protein-coding 474-104 chr16 65208570 65208895 + 2 NA Intergenic L1MEc|LINE|L1 -32159 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 416-15 chr1 177590023 177590256 + 2 NA Intergenic Intergenic -110385 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 271-427 chr8 48310677 48310844 + 2 NA Intergenic L1MA9|LINE|L1 -240807 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 437-236 chr6 18995570 18995956 + 2 NA Intergenic L1PA15-16|LINE|L1 184717 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 261-208 chr2 228663640 228663803 + 2 NA Intergenic Intergenic -52326 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 384-286 chr5 25894903 25895192 + 2 NA Intergenic Intergenic 704094 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 234-150 chr19 29063122 29063275 + 2 NA Intergenic Intergenic 60643 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 495-85 chr17 54683343 54683683 + 2 NA Intergenic Intergenic -217178 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 312-500 chr7 135060131 135060376 + 2 NA intron (NR_144293, intron 7 of 10) MLT1I-int|LTR|ERVL-MaLR 73745 NM_001345850 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 535-92 chr15 100327151 100327516 + 2 NA intron (NM_139057, intron 3 of 21) intron (NM_139057, intron 3 of 21) 14642 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 262-141 chr15 35674123 35674304 + 2 NA intron (NR_038251, intron 1 of 2) intron (NR_038251, intron 1 of 2) 128018 NR_038251 100507466 Hs.536420 NR_038251 ENSG00000248079 DPH6-DT ATPBD4-AS1|DPH6-AS1 DPH6 divergent transcript ncRNA 297-59 chr10 99309051 99309328 + 2 NA Intergenic L1MB7|LINE|L1 -19910 NM_001345888 26507 Hs.274579 NM_020348 ENSG00000119946 CNNM1 ACDP1|CLP-1 cyclin and CBS domain divalent metal cation transport mediator 1 protein-coding 329-288 chr2 138835544 138835710 + 2 NA Intergenic L1ME2|LINE|L1 -55237 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 273-353 chr5 51771200 51771439 + 2 NA Intergenic L1MA6|LINE|L1 -236712 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 273-319 chr4 44605041 44605251 + 2 NA Intergenic Intergenic 46495 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 400-143 chr18 73545948 73546283 + 2 NA Intergenic MIRb|SINE|MIR 221174 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 553-37 chr12 5352612 5352913 + 2 NA Intergenic L1MB7|LINE|L1 -79346 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 356-469 chr8 43643959 43644164 + 2 NA Intergenic ALR/Alpha|Satellite|centr 351619 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 294-265 chr20 58165546 58165836 + 2 NA Intergenic Intergenic 14789 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 254-118 chr14 68455333 68455528 + 2 NA intron (NM_133509, intron 9 of 10) L1M4|LINE|L1 173357 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 334-322 chr21 34316643 34316887 + 2 NA Intergenic L1ME3Cz|LINE|L1 -47259 NM_172201 9992 Hs.551521 NM_172201 ENSG00000159197 KCNE2 ATFB4|LQT5|LQT6|MIRP1 potassium voltage-gated channel subfamily E regulatory subunit 2 protein-coding 497-166 chr22 32558642 32559102 + 2 NA intron (NM_003490, intron 7 of 13) AmnSINE1|SINE|5S-Deu-L2 83635 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 858-28 chr20 19398141 19398645 + 2 NA intron (NM_020689, intron 2 of 16) L1MEc|LINE|L1 -113797 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 345-86 chr11 23119029 23119261 + 2 NA Intergenic Intergenic -258671 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 341-551 chr8 140022724 140022907 + 2 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 77720 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 434-139 chr2 53555754 53556109 + 2 NA Intergenic L1M4a2|LINE|L1 -211852 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 374-4 chr1 54641103 54641372 + 2 NA promoter-TSS (NM_001291332) promoter-TSS (NM_001291332) -503 NR_111931 374977 Hs.412482 NM_198547 ENSG00000184313 MROH7 C1orf175|HEATR8 maestro heat like repeat family member 7 protein-coding 536-67 chr13 67834613 67835119 + 2 NA Intergenic Intergenic 462479 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 328-618 chr9 126092671 126092955 + 2 NA Intergenic Intergenic 183102 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 391-54 chr11 20587821 20588038 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -11471 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 502-230 chr5 162646503 162646878 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 579048 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 380-290 chr4 143324294 143324603 + 2 NA Intergenic L1MEc|LINE|L1 -12428 NM_207123 2549 Hs.80720 NM_002039 ENSG00000109458 GAB1 DFNB26 GRB2 associated binding protein 1 protein-coding 397-277 chr6 62591809 62592104 + 2 NA Intergenic MER3|DNA|hAT-Charlie -305729 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 481-120 chr18 1797105 1797475 + 2 NA Intergenic Intergenic -437661 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 986-16 chr18 60270917 60271516 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 101559 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 248-252 chr3 115502240 115502484 + 2 NA Intergenic Intergenic -121148 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 321-471 chr5 100950331 100950642 + 2 NA Intergenic Intergenic -47204 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 404-216 chr3 115489799 115490124 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie -133549 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 143-15 chr12 656873 656984 + 2 NA intron (NM_016533, intron 1 of 3) L1MC1|LINE|L1 6517 NM_016533 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 221-214 chr4 45383745 45383930 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -657203 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 300-37 chr10 24760616 24760803 + 2 NA Intergenic Intergenic -36822 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 364-123 chr14 33253681 33253999 + 2 NA intron (NM_173159, intron 3 of 11) L2|LINE|L2 314961 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 241-431 chrX 21487346 21487557 + 2 NA intron (NM_001168648, intron 5 of 20) intron (NM_001168648, intron 5 of 20) 113033 NM_001330772 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 225-336 chr7 103472399 103472512 + 2 NA 3' UTR (NM_173054, exon 64 of 64) 3' UTR (NM_173054, exon 64 of 64) -26248 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 418-119 chr2 102130216 102130544 + 2 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) -11411 NM_001320981 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 358-440 chr7 55343260 55343500 + 2 NA Intergenic Intergenic -22068 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 139-27 chr14 61788740 61788846 + 2 NA intron (NM_003082, intron 8 of 9) L1ME3G|LINE|L1 -23369 NM_001367650 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 307-228 chr2 39458283 39458465 + 2 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 20958 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 221-302 chr8 110270299 110270486 + 2 NA Intergenic Intergenic -294621 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 438-184 chr3 187344692 187345092 + 2 NA Intergenic L1ME3B|LINE|L1 -23493 NM_022147 64108 Hs.43388 NM_022147 ENSG00000136514 RTP4 IFRG28|Z3CXXC4 receptor transporter protein 4 protein-coding 307-479 chr8 75542704 75542928 + 2 NA intron (NM_004133, intron 1 of 9) L2a|LINE|L2 2848 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 405-58 chr12 38702133 38702430 + 2 NA intron (NM_153634, intron 14 of 19) intron (NM_153634, intron 14 of 19) 203310 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 295-317 chr3 192254318 192254512 + 2 NA intron (NR_046596, intron 1 of 4) L1MA8|LINE|L1 15785 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 250-432 chr8 95527718 95527928 + 2 NA intron (NR_038207, intron 2 of 2) L1MEd|LINE|L1 -258622 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 360-297 chr3 34751707 34751991 + 2 NA Intergenic L1PA16|LINE|L1 642174 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 273-73 chr11 29552220 29552407 + 2 NA Intergenic Intergenic -42100 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 262-323 chr4 103262206 103262443 + 2 NA Intergenic Intergenic -63981 NM_001286734 1062 Hs.75573 NM_001813 ENSG00000138778 CENPE CENP-E|KIF10|MCPH13|PPP1R61 centromere protein E protein-coding 282-67 chr11 30845834 30846041 + 2 NA Intergenic Intergenic 146749 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 318-492 chr6 137499150 137499365 + 2 NA Intergenic Intergenic -4863 NM_175747 167826 Hs.195398 NM_175747 ENSG00000177468 OLIG3 Bhlhb7|bHLHe20 oligodendrocyte transcription factor 3 protein-coding 338-442 chr5 89986168 89986443 + 2 NA Intergenic Intergenic 30415 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 234-301 chr5 19701257 19701441 + 2 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 184923 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 176-7 chr1 221123659 221123775 + 2 NA Intergenic L1MC3|LINE|L1 212579 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 319-406 chr5 37921648 37921862 + 2 NA Intergenic L1ME3|LINE|L1 -26736 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 263-375 chr6 161632158 161632328 + 2 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 161266 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 392-294 chr6 163983018 163983260 + 2 NA Intergenic Intergenic -311655 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 231-367 chr8 134648957 134649148 + 2 NA intron (NM_020863, intron 2 of 15) L1MB5|LINE|L1 47503 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 492-141 chr2 162778714 162779031 + 2 NA intron (NR_110258, intron 2 of 4) intron (NR_110258, intron 2 of 4) 9936 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 344-321 chr3 95784429 95784654 + 2 NA Intergenic Intergenic -101348 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 232-409 chrX 44943582 44943742 + 2 NA intron (NR_111960, intron 2 of 27) L1ME1|LINE|L1 70487 NM_001291417 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 137-64 chr4 38360762 38360839 + 2 NA Intergenic Intergenic -6114 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 310-398 chr5 41403728 41404000 + 2 NA intron (NM_001005473, intron 1 of 2) L1HS|LINE|L1 106737 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 395-191 chr2 213213438 213213679 + 2 NA Intergenic MER57-int|LTR|ERV1 -45848 NR_146974 105373863 Hs.258045 NR_146974 LINC01953 - long intergenic non-protein coding RNA 1953 ncRNA 361-275 chr3 27864221 27864525 + 2 NA Intergenic L1MA8|LINE|L1 -30237 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 403-76 chr12 41793692 41794025 + 2 NA Intergenic MER20|DNA|hAT-Charlie 29669 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 646-82 chr22 49658513 49659035 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -1255 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 511-57 chr13 22052938 22053310 + 2 NA Intergenic Intergenic -157161 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 259-235 chr20 55981695 55981857 + 2 NA Intergenic LTR16A|LTR|ERVL 23743 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 518-165 chr21 27174951 27175456 + 2 NA Intergenic HAL1b|LINE|L1 -208115 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 337-318 chr20 60291554 60291821 + 2 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -16787 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 448-39 chr10 78883026 78883437 + 2 NA Intergenic L1ME1|LINE|L1 184217 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 375-120 chr14 26883870 26884088 + 2 NA intron (NR_110041, intron 3 of 3) L1MEc|LINE|L1 10846 NR_110041 101927081 Hs.97955 NR_110041 ENSG00000257612 MIR4307HG - MIR4307 host gene ncRNA 398-18 chr1 171304527 171304754 + 2 NA Intergenic AluJb|SINE|Alu -9543 NM_002022 2329 Hs.386502 NM_002022 ENSG00000076258 FMO4 FMO2 flavin containing dimethylaniline monoxygenase 4 protein-coding 373-436 chr9 114371678 114371869 + 2 NA intron (NM_001317950, intron 4 of 21) intron (NM_001317950, intron 4 of 21) 16209 NM_001317950 80709 Hs.494895 NM_030767 ENSG00000106948 AKNA - AT-hook transcription factor protein-coding 225-329 chr7 45169934 45170107 + 2 NA intron (NM_005856, intron 1 of 2) L1MB7|LINE|L1 12229 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 306-148 chr14 65380574 65380769 + 2 NA Intergenic Intergenic -29921 NR_038167 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 139-39 chr18 7289650 7289753 + 2 NA Intergenic Intergenic 58597 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 274-148 chr15 97204298 97204466 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 317429 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 365-48 chr10 54945552 54945760 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -144365 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 260-199 chr2 18272704 18272904 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 287849 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 205-238 chr6 39520830 39521018 + 2 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -89534 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 313-220 chr19 29473776 29474031 + 2 NA intron (NR_040029, intron 1 of 9) L1MA9|LINE|L1 51849 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 368-493 chrX 68545709 68545936 + 2 NA Intergenic LTR39|LTR|ERV1 46771 NM_173834 286451 Hs.82719 NM_173834 ENSG00000181704 YIPF6 FinGER6 Yip1 domain family member 6 protein-coding 239-349 chr6 49055808 49055991 + 2 NA Intergenic L1MD1|LINE|L1 407354 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 208-146 chr20 21011509 21011614 + 2 NA Intergenic AluJo|SINE|Alu 94797 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 364-173 chr17 70798637 70798970 + 2 NA Intergenic Intergenic 403376 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 633-80 chr3 88231003 88231334 + 2 NA Intergenic Intergenic 81209 NM_173824 285237 Hs.476944 NM_173824 ENSG00000179021 C3orf38 - chromosome 3 open reading frame 38 protein-coding 284-175 chr19 7018260 7018421 + 2 NA TTS (NM_001364674).2 TTS (NM_001364674).2 3091 NM_001364674 729458 NM_001364674 MBD3L2B - methyl-CpG binding domain protein 3 like 2B protein-coding 317-161 chr14 94567377 94567683 + 2 NA intron (NM_006215, intron 3 of 4) MIR3|SINE|MIR 6088 NM_001289033 5267 Hs.719893 NM_006215 ENSG00000100665 SERPINA4 KAL|KLST|KST|PI-4|PI4|kallistatin serpin family A member 4 protein-coding 328-231 chr19 21532883 21533086 + 2 NA intron (NM_001001415, intron 3 of 3) AluSx|SINE|Alu 27382 NM_001346915 353088 Hs.572567 NM_001001415 ENSG00000197013 ZNF429 - zinc finger protein 429 protein-coding 516-217 chr5 161266259 161266721 + 2 NA Intergenic L1PB3|LINE|L1 281634 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 285-182 chr19 53264192 53264384 + 2 NA Intergenic L1ME3A|LINE|L1 3377 NM_173857 317703 Hs.553685 NM_173857 ENSG00000228567 VN1R4 V1RL4 vomeronasal 1 receptor 4 protein-coding 281-305 chr4 12331356 12331599 + 2 NA Intergenic Intergenic 108026 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 290-166 chr16 82281277 82281487 + 2 NA Intergenic Intergenic -111158 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 159-77 chr5 153274856 153275004 + 2 NA Intergenic Intergenic -215594 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 200-28 chr10 9232701 9232824 + 2 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -42851 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 309-115 chr12 96176781 96177028 + 2 NA Intergenic MIR3|SINE|MIR -17471 NM_005230 2004 Hs.46523 NM_005230 ENSG00000111145 ELK3 ERP|NET|SAP-2|SAP2 ETS transcription factor ELK3 protein-coding 432-295 chr9 2309570 2309934 + 2 NA Intergenic L1MA2|LINE|L1 151296 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 339-308 chr20 11443766 11444031 + 2 NA Intergenic Intergenic -170515 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 236-376 chr9 24155386 24155581 + 2 NA Intergenic L1MEi|LINE|L1 -304882 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 333-304 chr20 19533852 19534121 + 2 NA intron (NM_020689, intron 3 of 16) intron (NM_020689, intron 3 of 16) -249390 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 266-186 chr2 105984365 105984534 + 2 NA Intergenic Harlequin-int|LTR|ERV1 -81239 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 254-79 chr12 40533051 40533211 + 2 NA intron (NM_173600, intron 122 of 173) intron (NM_173600, intron 122 of 173) 139737 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 437-284 chr8 131519043 131519325 + 2 NA Intergenic Intergenic -384909 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 452-119 chr2 20840911 20841180 + 2 NA Intergenic Intergenic -17915 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 204-53 chr12 22609225 22609396 + 2 NA TTS (NR_135031) TTS (NR_135031) 15736 NR_135031 105369691 Hs.556287 NR_135030 LOC105369691 - uncharacterized LOC105369691 ncRNA 333-568 chr8 81444492 81444749 + 2 NA intron (NM_001348381, intron 1 of 2) intron (NM_001348381, intron 1 of 2) 2819 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 519-157 chr4 32862839 32863353 + 2 NA Intergenic Intergenic 512058 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 708-64 chr5 160533666 160534053 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 48507 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 242-372 chr7 63972060 63972295 + 2 NA Intergenic L1MB2|LINE|L1 -26629 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 301-392 chr6 48241158 48241399 + 2 NA Intergenic Intergenic -172589 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 266-122 chr14 88307628 88307776 + 2 NA intron (NM_021161, intron 1 of 6) intron (NM_021161, intron 1 of 6) 15567 NM_138317 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 477-214 chr3 188697006 188697320 + 2 NA intron (NM_005578, intron 6 of 10) intron (NM_005578, intron 6 of 10) 8382 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 303-136 chr14 86554484 86554678 + 2 NA Intergenic Intergenic -351197 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 545-51 chr12 1101251 1101620 + 2 NA intron (NR_027948, intron 3 of 19) MLT1N2|LTR|ERVL-MaLR 73687 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 379-149 chr2 18315435 18315774 + 2 NA Intergenic Intergenic 245049 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 413-205 chr4 12487528 12487925 + 2 NA Intergenic L1M1|LINE|L1 264275 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 357-51 chr10 125528572 125528760 + 2 NA Intergenic Intergenic -45705 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 435-239 chr8 82962112 82962382 + 2 NA TTS (NR_134295) TTS (NR_134295) 50143 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 329-227 chr18 2268860 2269181 + 2 NA Intergenic MIRc|SINE|MIR 302485 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 524-164 chr4 35743359 35743736 + 2 NA Intergenic L1PA13|LINE|L1 500392 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 232-133 chr17 61338019 61338154 + 2 NA intron (NM_001330413, intron 23 of 25) L2b|LINE|L2 29618 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 242-110 chr14 80289624 80289794 + 2 NA intron (NR_038355, intron 2 of 8) L1MB7|LINE|L1 -58652 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 350-552 chr9 22574169 22574497 + 2 NA Intergenic L1PA10|LINE|L1 -71867 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 682-25 chr12 63083394 63083925 + 2 NA Intergenic Intergenic 69151 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 924-17 chr14 61377071 61377921 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 56053 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 260-38 chr10 18232293 18232449 + 2 NA intron (NM_201593, intron 2 of 13) MIR|SINE|MIR -28351 NM_000724 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 304-467 chr6 104289893 104290176 + 2 NA Intergenic Intergenic 569512 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 566-176 chr7 20005122 20005499 + 2 NA intron (NR_110114, intron 3 of 5) CR1-3_Croc|LINE|CR1 135116 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 400-341 chr8 84287972 84288332 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 103486 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 383-306 chr5 26370914 26371152 + 2 NA Intergenic Intergenic 667553 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 304-345 chr3 88404798 88405016 + 2 NA intron (NM_001368168, intron 2 of 2) MER31A|LTR|ERV1 66451 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 372-248 chr2 107494853 107495110 + 2 NA Intergenic Intergenic -34438 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 177-19 chr10 59156288 59156435 + 2 NA Intergenic L3|LINE|CR1 20103 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 154-112 chrX 97164345 97164441 + 2 NA intron (NM_007309, intron 22 of 26) intron (NM_007309, intron 22 of 26) 280485 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 365-279 chr4 32666589 32666801 + 2 NA Intergenic L1PA4|LINE|L1 315657 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 213-22 chr1 206687600 206687753 + 2 NA intron (NM_004759, intron 1 of 9) intron (NM_004759, intron 1 of 9) 2771 NM_004759 9261 Hs.643566 NM_004759 ENSG00000162889 MAPKAPK2 MAPKAP-K2|MK-2|MK2 MAPK activated protein kinase 2 protein-coding 251-163 chr2 34032907 34033058 + 2 NA intron (NR_126403, intron 4 of 5) L1ME4a|LINE|L1 -34244 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 239-149 chr18 70587300 70587429 + 2 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat 63590 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 213-215 chr4 97818201 97818398 + 2 NA intron (NM_174952, intron 9 of 10) MER44A|DNA|TcMar-Tigger 325177 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 442-257 chr6 103345592 103345909 + 2 NA Intergenic Intergenic 1513796 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 271-62 chr10 127488953 127489136 + 2 NA Intergenic Intergenic -60305 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 239-332 chr5 143695732 143695954 + 2 NA Intergenic Intergenic 15983 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 329-372 chr3 100500788 100501093 + 2 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 8321 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 512-135 chr2 153014427 153014862 + 2 NA Intergenic L1ME3E|LINE|L1 296007 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 218-157 chr2 81458400 81458596 + 2 NA Intergenic Intergenic 8448 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 220-338 chr7 36232855 36232979 + 2 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 79663 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 505 chr1 24765722 24766040 + 2 NA intron (NM_013943, intron 1 of 5) AluSx1|SINE|Alu 20434 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 331-404 chr5 3630078 3630343 + 2 NA Intergenic Intergenic 34378 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 194-181 chr6 53736586 53736720 + 2 NA Intergenic Intergenic -58352 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 260-12 chr1 103834003 103834184 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 84252 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 386-370 chr9 7204562 7204901 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 447381 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 344-156 chr15 69931172 69931400 + 2 NA Intergenic Intergenic 96052 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 441-275 chr9 72345691 72345964 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie 18729 NM_001278245 7763 Hs.406096 NM_006007 ENSG00000107372 ZFAND5 ZA20D2|ZFAND5A|ZNF216 zinc finger AN1-type containing 5 protein-coding 352-422 chr5 84492359 84492547 + 2 NA Intergenic Intergenic -107573 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 218-3 chr1 38469319 38469480 + 2 NA Intergenic Intergenic -5797 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 260-258 chr3 29197593 29197793 + 2 NA Intergenic Intergenic 83246 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 338-397 chr4 173199462 173199672 + 2 NA intron (NM_017423, intron 1 of 11) intron (NM_017423, intron 1 of 11) -29915 NR_134241 101930370 Hs.563191 NR_134241 ENSG00000245213 LOC101930370 - uncharacterized LOC101930370 ncRNA 285-67 chr11 81836046 81836202 + 2 NA Intergenic L1MA3|LINE|L1 54712 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 314-156 chr13 94552952 94553256 + 2 NA Intergenic Intergenic -3698 NM_001322185 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 368-114 chr12 98373151 98373374 + 2 NA Intergenic Intergenic 83883 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 185-111 chr2 183336022 183336152 + 2 NA Intergenic L1MA7|LINE|L1 211644 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 405-283 chr6 98146368 98146674 + 2 NA Intergenic Intergenic 121990 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 342-317 chr3 67769590 67769930 + 2 NA intron (NR_109992, intron 3 of 6) L1M2|LINE|L1 115063 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 342-400 chr5 59513973 59514244 + 2 NA intron (NM_001349242, intron 1 of 16) AluY|SINE|Alu 72390 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 471-158 chr22 22995264 22995624 + 2 NA Intergenic L1M4a1|LINE|L1 -75075 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 510-279 chr8 115726582 115726990 + 2 NA Intergenic Intergenic -57811 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 190-165 chr7 96436616 96436767 + 2 NA Intergenic Intergenic 66832 NR_163949 165-105 chr6 16990860 16990986 + 2 NA Intergenic L2c|LINE|L2 -111335 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 272-86 chr12 9917525 9917747 + 2 NA intron (NM_207375, intron 3 of 4) intron (NM_207375, intron 3 of 4) 14734 NM_207375 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 327-429 chr5 179189149 179189463 + 2 NA intron (NM_014244, intron 4 of 21) LTR7B|LTR|ERV1 128933 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 186-15 chr10 22264161 22264290 + 2 NA Intergenic MLT1M|LTR|ERVL-MaLR 12153 NR_038921 100130992 Hs.48501 NR_038921 LOC100130992 - uncharacterized LOC100130992 ncRNA 509-230 chr7 16945267 16945673 + 2 NA Intergenic Intergenic -63487 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 427-27 chr10 88434109 88434480 + 2 NA intron (NM_018363, intron 4 of 6) intron (NM_018363, intron 4 of 6) 149024 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 498-95 chr15 67491247 67491590 + 2 NA intron (NM_001031715, intron 19 of 20) intron (NM_001031715, intron 19 of 20) 29555 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 312-281 chr20 8695156 8695435 + 2 NA intron (NM_182734, intron 10 of 32) intron (NM_182734, intron 10 of 32) -135890 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 265-191 chr2 116464439 116464618 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 1120713 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 339-19 chr1 85120194 85120379 + 2 NA intron (NM_001288563, intron 16 of 21) L2a|LINE|L2 -13508 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 302-319 chr4 52779922 52780175 + 2 NA Intergenic Intergenic -9946 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 205-275 chr8 103329138 103329293 + 2 NA intron (NM_003506, intron 5 of 6) intron (NM_003506, intron 5 of 6) 20237 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 308-126 chr13 36463890 36464131 + 2 NA Intergenic L1M1|LINE|L1 31515 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 411-188 chr3 122857783 122858156 + 2 NA intron (NM_032839, intron 6 of 8) intron (NM_032839, intron 6 of 8) -28544 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 177-56 chr15 80553385 80553555 + 2 NA intron (NM_014862, intron 10 of 18) L1MC4|LINE|L1 9474 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 185-113 chr2 190000741 190000884 + 2 NA Intergenic L1M4a1|LINE|L1 61917 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 128-61 chr6 126484091 126484207 + 2 NA promoter-TSS (NR_030316) promoter-TSS (NR_030316) -482 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 294-330 chr4 52060812 52061089 + 2 NA intron (NM_001346102, intron 3 of 10) intron (NM_001346102, intron 3 of 10) 9646 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 273-48 chr10 44949736 44949918 + 2 NA intron (NR_033842, intron 1 of 7) MLT1A|LTR|ERVL-MaLR 9862 NR_033842 220980 Hs.568801 NR_033842 ENSG00000224812 TMEM72-AS1 - TMEM72 antisense RNA 1 ncRNA 606-142 chr6 142334233 142334775 + 2 NA intron (NM_198569, intron 2 of 24) L3|LINE|CR1 32497 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 281-27 chr1 232840674 232840892 + 2 NA Intergenic L1M4|LINE|L1 35891 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 458-219 chr6 22132543 22132976 + 2 NA intron (NR_015410, intron 9 of 11) L2b|LINE|L2 14434 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 284-76 chr11 106339554 106339745 + 2 NA Intergenic L1PA3|LINE|L1 88242 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 495-151 chr3 25199272 25199672 + 2 NA intron (NM_001290216, intron 4 of 10) L1PA4|LINE|L1 -141330 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 682-5 chr1 169458726 169459310 + 2 NA intron (NM_001300968, intron 2 of 6) intron (NM_001300968, intron 2 of 6) 1651 NM_001300968 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 290-442 chr8 52259651 52259824 + 2 NA intron (NR_148195, intron 2 of 3) MIR|SINE|MIR -5245 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 388-21 chr1 185636647 185636948 + 2 NA Intergenic MER72B|LTR|ERV1 -8309 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 298-300 chr3 85408887 85409122 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 23294 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 291-185 chr18 7287248 7287442 + 2 NA Intergenic Intergenic 56241 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 467-256 chr7 8899385 8899714 + 2 NA Intergenic L1PA17|LINE|L1 465940 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 387-119 chr15 67473228 67473544 + 2 NA intron (NR_040051, intron 2 of 5) intron (NR_040051, intron 2 of 5) 47587 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 445-137 chr2 174056335 174056744 + 2 NA Intergenic AluSx3|SINE|Alu 31259 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 227-115 chr15 46807389 46807537 + 2 NA Intergenic Intergenic -376626 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 247-3 chr1 40071263 40071439 + 2 NA TTS (NM_001142604) TTS (NM_001142604) 25901 NM_001363695 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 299-438 chr8 21443344 21443519 + 2 NA Intergenic MIRc|SINE|MIR 145192 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 367-94 chr12 76495261 76495500 + 2 NA intron (NM_001003712, intron 1 of 22) intron (NM_001003712, intron 1 of 22) 64391 NM_020841 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 640-103 chr5 11029442 11029946 + 2 NA intron (NM_001288715, intron 15 of 20) L1M4c|LINE|L1 -268460 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 273-168 chr17 33189904 33190168 + 2 NA intron (NM_001094, intron 1 of 9) L1ME1|LINE|L1 102952 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 492-37 chr11 40592928 40593297 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -299982 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 261-345 chr7 14618590 14618811 + 2 NA intron (NM_001350717, intron 14 of 24) intron (NM_001350717, intron 14 of 24) 222750 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 210-14 chr1 118825548 118825716 + 2 NA Intergenic L3|LINE|CR1 162711 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 528-221 chr6 56107942 56108351 + 2 NA intron (NM_030820, intron 16 of 29) L1MC4|LINE|L1 -16484 NM_001318754 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 209-150 chr2 65251217 65251395 + 2 NA intron (NM_001005386, intron 5 of 9) intron (NM_001005386, intron 5 of 9) 23611 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 326-380 chr4 105051878 105052170 + 2 NA Intergenic L1PA11|LINE|L1 -93851 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 329-599 chr8 141964016 141964242 + 2 NA Intergenic Intergenic -177816 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 501-151 chr22 48556833 48557192 + 2 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) -9625 NR_038917 284933 Hs.159057 NR_038917 ENSG00000281732 LOC284933 - uncharacterized LOC284933 ncRNA 594-167 chr9 113729872 113730317 + 2 NA Intergenic L1MB7|LINE|L1 135965 NM_001276262 5998 Hs.494875 NM_017790 ENSG00000138835 RGS3 C2PA|RGP3 regulator of G protein signaling 3 protein-coding 288-92 chr13 35397460 35397664 + 2 NA intron (NM_015678, intron 38 of 57) L2a|LINE|L2 79127 NM_005584 4081 Hs.584776 NM_005584 ENSG00000180660 MAB21L1 CAGR1|Nbla00126 mab-21 like 1 protein-coding 316-244 chr2 8509360 8509525 + 2 NA Intergenic Intergenic 74350 NR_110257 101929567 Hs.634706 NR_110257 ENSG00000236008 LINC01814 - long intergenic non-protein coding RNA 1814 ncRNA 433-56 chr12 17812656 17812939 + 2 NA Intergenic L1M3e|LINE|L1 139498 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 314-151 chr13 73771814 73772031 + 2 NA intron (NM_007249, intron 5 of 7) intron (NM_007249, intron 5 of 7) 207678 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 450-186 chr3 1848485 1848897 + 2 NA Intergenic Intergenic -250112 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 347-528 chr8 128547709 128547996 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 16827 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 518-57 chr11 90965402 90965842 + 2 NA Intergenic Intergenic -96420 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 414-333 chr8 122126358 122126749 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 442091 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 278-314 chr4 66219829 66220044 + 2 NA Intergenic Intergenic -56888 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 428-206 chr4 45858616 45858971 + 2 NA Intergenic AluJb|SINE|Alu 265261 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 646-46 chr17 41501315 41501811 + 2 NA intron (NM_002274, intron 6 of 6) intron (NM_002274, intron 6 of 6) 4049 NM_153490 3860 Hs.654550 NM_002274 ENSG00000171401 KRT13 CK13|K13|WSN2 keratin 13 protein-coding 516-183 chr3 190675681 190676153 + 2 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 161832 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 417-73 chr14 32585274 32585579 + 2 NA intron (NM_004274, intron 5 of 13) intron (NM_004274, intron 5 of 13) 256128 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 529-14 chr10 52475158 52475511 + 2 NA Intergenic Intergenic -4801 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 306-133 chr14 20502511 20502789 + 2 NA Intergenic Intergenic -7822 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 385-370 chr7 145836232 145836538 + 2 NA Intergenic L1MA3|LINE|L1 -937886 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 271-383 chr6 74784423 74784563 + 2 NA Intergenic L1M1|LINE|L1 344289 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 344-348 chr4 36017043 36017355 + 2 NA intron (NR_146893, intron 35 of 36) intron (NR_146893, intron 35 of 36) 226740 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 269-129 chr15 26042474 26042657 + 2 NA intron (NR_040082, intron 2 of 4) MLT2F|LTR|ERVL -73248 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 200-113 chr19 11662134 11662287 + 2 NA Intergenic Intergenic 4879 NR_002944 664709 Hs.534822 NR_002944 HNRNPA1P10 HNRPA1L-2 heterogeneous nuclear ribonucleoprotein A1 pseudogene 10 pseudo 217-278 chr4 184185888 184186059 + 2 NA intron (NM_153343, intron 1 of 7) L1MC4|LINE|L1 31900 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 264-64 chr10 114493160 114493374 + 2 NA intron (NM_001352440, intron 6 of 20) intron (NM_001352440, intron 6 of 20) 33646 NM_001322895 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 397-363 chrX 22211127 22211362 + 2 NA intron (NR_073010, intron 9 of 11) MER45B|DNA|hAT-Tip100 -38261 NR_046639 100873942 Hs.633194 NR_046639 ENSG00000224204 PHEX-AS1 - PHEX antisense RNA 1 ncRNA 389-254 chr4 30305739 30306058 + 2 NA Intergenic L2c|LINE|L2 -414471 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 333-27 chr1 110282217 110282387 + 2 NA Intergenic Intergenic 56869 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 245-121 chr14 41641856 41642084 + 2 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 35114 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 600-142 chrX 44287062 44287475 + 2 NA intron (NM_025184, intron 2 of 14) intron (NM_025184, intron 2 of 14) 56404 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 237-405 chr9 32966597 32966740 + 2 NA Intergenic Intergenic 34908 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 340-76 chr11 54954735 54954939 + 2 NA Intergenic L1P1|LINE|L1 248005 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 241-121 chr14 83544840 83545050 + 2 NA Intergenic MIRb|SINE|MIR 902313 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 331-233 chr19 11809568 11809783 + 2 NA Intergenic Intergenic -4598 NM_152357 126070 Hs.418192 NM_152357 ENSG00000171295 ZNF440 - zinc finger protein 440 protein-coding 201-247 chr8 128928238 128928401 + 2 NA Intergenic L2c|LINE|L2 37682 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 314-208 chr16 51722213 51722433 + 2 NA Intergenic Intergenic -40196 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 282-94 chr12 29497146 29497370 + 2 NA intron (NM_001353179, intron 1 of 25) AluJb|SINE|Alu 2435 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 501-43 chr12 2370690 2371137 + 2 NA intron (NM_199460, intron 3 of 49).2 L3|LINE|CR1 101137 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 333-601 chr9 30801738 30802020 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -393425 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 247-7 chr1 74964435 74964604 + 2 NA Intergenic Intergenic -163915 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 215-200 chr3 93862319 93862483 + 2 NA Intergenic MLT2B3|LTR|ERVL 111680 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 230-25 chr1 189885843 189885993 + 2 NA Intergenic L1PA16|LINE|L1 590092 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 383-320 chr5 76329449 76329787 + 2 NA 3' UTR (NM_014979, exon 13 of 13) 3' UTR (NM_014979, exon 13 of 13) -73667 NM_006633 10788 Hs.291030 NM_006633 ENSG00000145703 IQGAP2 - IQ motif containing GTPase activating protein 2 protein-coding 278-223 chr2 106613625 106613863 + 2 NA Intergenic L1MEi|LINE|L1 126380 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 222-275 chr4 137871659 137871816 + 2 NA Intergenic Intergenic -217277 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 307-499 chr8 137783712 137783913 + 2 NA Intergenic Intergenic 299733 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 287-435 chr9 37897686 37897940 + 2 NA intron (NM_033412, intron 2 of 2) intron (NM_033412, intron 2 of 2) 6314 NM_033412 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 269-202 chr2 107283932 107284158 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 65480 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 489-201 chr5 13344784 13345180 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -312096 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 323-549 chr8 84711199 84711492 + 2 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 5418 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 140-65 chr6 163198316 163198408 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -6360 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 348-172 chr16 59387382 59387665 + 2 NA Intergenic Intergenic 367668 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 365-381 chr7 78782140 78782366 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -226735 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 347-403 chr5 84047527 84047723 + 2 NA intron (NM_001278642, intron 8 of 9) intron (NM_001278642, intron 8 of 9) -326770 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 430-206 chr4 24932433 24932849 + 2 NA intron (NM_173463, intron 1 of 12) intron (NM_173463, intron 1 of 12) -19663 NM_001130726 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 301-251 chr20 40542760 40542990 + 2 NA Intergenic Intergenic 146361 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 254-18 chr1 176427712 176427882 + 2 NA Intergenic L1MC1|LINE|L1 -35378 NM_021936 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 471-284 chr9 73364027 73364341 + 2 NA Intergenic MER41B|LTR|ERV1 212319 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 348-349 chr4 34494575 34494883 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -224982 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 122-40 chr4 78955842 78955934 + 2 NA Intergenic (TGGA)n|Simple_repeat|Simple_repeat -15860 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 214-98 chr14 51430706 51430917 + 2 NA Intergenic Intergenic -33676 NR_146549 105370496 Hs.578228 NR_146549 ENSG00000258808 LINC02310 - long intergenic non-protein coding RNA 2310 ncRNA 247-428 chr9 37794032 37794218 + 2 NA Intergenic L1M4|LINE|L1 -6429 NM_001286810 79269 Hs.118394 NM_024345 ENSG00000122741 DCAF10 WDR32 DDB1 and CUL4 associated factor 10 protein-coding 205-262 chr7 79585591 79585741 + 2 NA Intergenic L1MB2|LINE|L1 131706 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 562-207 chr7 89333812 89334222 + 2 NA exon (NM_181646, exon 4 of 4) exon (NM_181646, exon 4 of 4) -538280 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 369-245 chr20 59369910 59370102 + 2 NA Intergenic Intergenic 69395 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 373-344 chr5 163011376 163011626 + 2 NA Intergenic Intergenic -426070 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 203-34 chr11 22942704 22942884 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -82320 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 161-33 chr16 57202263 57202421 + 2 NA intron (NM_001305163, intron 1 of 14) intron (NM_001305163, intron 1 of 14) 16013 NM_001305163 89970 Hs.460885 NM_133368 ENSG00000159579 RSPRY1 SEMDFA ring finger and SPRY domain containing 1 protein-coding 187-170 chr8 20753791 20753973 + 2 NA Intergenic Intergenic -138956 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 691-49 chr3 19552253 19552880 + 2 NA Intergenic L1M1|LINE|L1 -237635 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 318-148 chr12 114585479 114585736 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 98568 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 408-229 chr4 42848219 42848555 + 2 NA Intergenic L1PA16|LINE|L1 -44879 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 369-110 chr14 48987247 48987554 + 2 NA Intergenic Intergenic 598980 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 767-36 chr3 159313842 159314508 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 31529 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 414-119 chr17 54613341 54613706 + 2 NA Intergenic L1M4|LINE|L1 -287168 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 732-79 chr6 23856916 23857284 + 2 NA Intergenic Intergenic -269115 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 360-135 chr15 26107506 26107730 + 2 NA Intergenic L1M5|LINE|L1 -8195 NR_038851 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 296-212 chr2 33410037 33410219 + 2 NA Intergenic Intergenic -8388 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 396-33 chr1 221680963 221681231 + 2 NA Intergenic L1MEg|LINE|L1 55803 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 424-62 chr13 75123322 75123580 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 116930 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 341-479 chr6 160216421 160216639 + 2 NA TTS (NM_003058) TTS (NM_003058) 42291 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 235-114 chr15 57914110 57914281 + 2 NA Intergenic Intergenic 99828 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 300-94 chr12 112767722 112767921 + 2 NA intron (NM_001347952, intron 1 of 21) L1MB7|LINE|L1 -23717 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 415-169 chr22 47904673 47905002 + 2 NA Intergenic AluJb|SINE|Alu 273163 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 340-121 chr12 128610484 128610774 + 2 NA intron (NM_001136103, intron 3 of 8) intron (NM_001136103, intron 3 of 8) 213329 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 225-20 chr1 224599063 224599230 + 2 NA intron (NR_136294, intron 4 of 8) MLT1H2|LTR|ERVL-MaLR -17171 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 380-199 chr2 139565488 139565774 + 2 NA Intergenic Intergenic 668307 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 399-161 chr2 125528855 125529157 + 2 NA Intergenic Intergenic 588979 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 246-379 chr7 91343724 91343895 + 2 NA Intergenic Intergenic 79376 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 261-35 chr10 48866243 48866459 + 2 NA intron (NM_020945, intron 39 of 61) L1MB8|LINE|L1 47884 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 325-256 chr2 29974126 29974317 + 2 NA Intergenic LTR53-int|LTR|ERVL -52635 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 355-134 chr12 118891410 118891743 + 2 NA Intergenic L2a|LINE|L2 -58040 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 264-118 chr13 103084462 103084631 + 2 NA Intergenic Intergenic -18129 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 337-446 chr5 46038240 46038431 + 2 NA Intergenic ALR/Alpha|Satellite|centr -341955 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 277-427 chr8 120502879 120503073 + 2 NA intron (NM_022045, intron 15 of 21) L2b|LINE|L2 57557 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 420-298 chr8 132107210 132107582 + 2 NA Intergenic AluSp|SINE|Alu -2131 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 559-113 chr22 20843347 20843778 + 2 NA intron (NM_058004, intron 1 of 54) intron (NM_058004, intron 1 of 54) 15249 NM_058004 5297 Hs.529438 NM_002650 ENSG00000241973 PI4KA PI4K-ALPHA|PIK4CA|PMGYCHA|pi4K230 phosphatidylinositol 4-kinase alpha protein-coding 274-59 chr10 115836126 115836308 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 358572 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 373-250 chr22 34854290 34854575 + 2 NA intron (NR_138042, intron 3 of 4) L1ME1|LINE|L1 143484 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 280-266 chr3 159127253 159127441 + 2 NA intron (NM_001197113, intron 1 of 10) MIR|SINE|MIR 58028 NM_001042706 654502 Hs.570685 NM_001042705 ENSG00000214216 IQCJ - IQ motif containing J protein-coding 632-127 chr9 99368309 99368798 + 2 NA intron (NR_102271, intron 3 of 5) intron (NR_102271, intron 3 of 5) 6704 NR_102270 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 321-282 chr2 41535420 41535674 + 2 NA Intergenic LOR1a|LTR|ERV1 -342008 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 287-261 chr3 112383314 112383525 + 2 NA Intergenic L2c|LINE|L2 50263 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 194-9 chr1 87942168 87942331 + 2 NA Intergenic Intergenic -570594 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 223-150 chr2 55424205 55424358 + 2 NA Intergenic L2b|LINE|L2 -4425 NM_018084 55704 Hs.292925 NM_018084 ENSG00000115355 CCDC88A APE|GIRDIN|GIV|GRDN|HkRP1|KIAA1212|PEHO|PEHOL coiled-coil domain containing 88A protein-coding 562-93 chr19 42447619 42448000 + 2 NA intron (NR_073179, intron 1 of 1) HERVH-int|LTR|ERV1 -4863 NR_133910 284340 Hs.445586 NM_198477 ENSG00000189377 CXCL17 DMC|Dcip1|UNQ473|VCC-1|VCC1 C-X-C motif chemokine ligand 17 protein-coding 336-366 chr3 63492881 63493052 + 2 NA intron (NM_001130003, intron 3 of 5) intron (NM_001130003, intron 3 of 5) 49654 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 198-82 chr16 59738064 59738212 + 2 NA Intergenic MIRb|SINE|MIR 17053 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 634-120 chr4 142487537 142488016 + 2 NA intron (NM_003866, intron 2 of 26) L1MEg2|LINE|L1 358759 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 294-102 chr13 114176155 114176335 + 2 NA Intergenic Intergenic -43622 NM_007368 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 320-94 chr11 92115536 92115774 + 2 NA Intergenic L1PB3|LINE|L1 -109379 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 415-118 chr2 18766503 18766879 + 2 NA Intergenic L1MB7|LINE|L1 -177111 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 264-11 chr1 108684560 108684797 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -7632 NM_018061 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 551-134 chr4 67013555 67014039 + 2 NA Intergenic Intergenic 408203 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 374-60 chr11 116588999 116589198 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -50324 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 324-265 chr2 81233170 81233401 + 2 NA Intergenic Intergenic 233661 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 253-208 chr2 194166117 194166361 + 2 NA Intergenic MER97a|DNA|hAT-Tip100 -178030 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 240-316 chr4 54667732 54667915 + 2 NA intron (NM_000222, intron 1 of 20) intron (NM_000222, intron 1 of 20) 9895 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 266-430 chr8 115537886 115538122 + 2 NA intron (NM_001282902, intron 4 of 5) intron (NM_001282902, intron 4 of 5) 130009 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 331-119 chr12 53405277 53405583 + 2 NA intron (NM_003109, intron 3 of 5) AluSx|SINE|Alu -18425 NM_020547 269 Hs.659889 NM_020547 ENSG00000135409 AMHR2 AMHR|MISR2|MISRII|MRII anti-Mullerian hormone receptor type 2 protein-coding 201-62 chr12 50165783 50165971 + 2 NA intron (NM_001331069, intron 1 of 11) intron (NM_001331069, intron 1 of 11) 1492 NR_138535 91012 Hs.270525 NM_147190 ENSG00000139624 CERS5 LASS5|Trh4 ceramide synthase 5 protein-coding 385-55 chr11 86793851 86794092 + 2 NA intron (NM_001293180, intron 1 of 1) L2b|LINE|L2 2900 NM_001293180 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 362-433 chr8 61774424 61774634 + 2 NA Intergenic Intergenic 59741 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 520-83 chr14 47156368 47156795 + 2 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 186665 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 311-395 chr5 3392748 3393019 + 2 NA Intergenic Intergenic -59933 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 311-211 chr18 21015014 21015309 + 2 NA intron (NM_005406, intron 13 of 32) intron (NM_005406, intron 13 of 32) 96652 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 235-335 chr7 81489361 81489536 + 2 NA Intergenic Intergenic 72371 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 797-33 chr3 154377127 154377819 + 2 NA intron (NM_001038705, intron 3 of 3) AluSx|SINE|Alu 52717 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 279-432 chr8 139906578 139906773 + 2 NA intron (NM_001160372, intron 20 of 22) intron (NM_001160372, intron 20 of 22) 193860 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 299-243 chr2 198370794 198371029 + 2 NA intron (NR_110267, intron 2 of 2) intron (NR_110267, intron 2 of 2) 4186 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 187-36 chr12 4405885 4406002 + 2 NA Intergenic Intergenic -26231 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 922 chr1 28165314 28165974 + 2 NA intron (NM_001164722, intron 1 of 1) AluY|SINE|Alu 11046 NM_001164723 5724 Hs.77542 NM_000952 ENSG00000169403 PTAFR PAFR platelet activating factor receptor protein-coding 578-53 chr13 102930463 102930957 + 2 NA Intergenic Intergenic 50611 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 381-344 chr6 156318098 156318475 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -60464 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 415-100 chr17 69031705 69031952 + 2 NA intron (NM_080283, intron 10 of 38) intron (NM_080283, intron 10 of 38) 27114 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 239-208 chr20 124223 124411 + 2 NA Intergenic L1MDa|LINE|L1 -18273 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 298-60 chr10 115956496 115956653 + 2 NA Intergenic Intergenic 238215 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 277-385 chr7 83478484 83478692 + 2 NA intron (NM_001178129, intron 2 of 16) intron (NM_001178129, intron 2 of 16) 162843 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 454-45 chr10 123886819 123887081 + 2 NA intron (NM_198148, intron 1 of 13) intron (NM_198148, intron 1 of 13) 4857 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 309-206 chr17 62018593 62018893 + 2 NA intron (NM_005121, intron 8 of 29) MER2|DNA|TcMar-Tigger 46535 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 459-18 chr1 187936020 187936464 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 492614 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 551-220 chr8 105170870 105171205 + 2 NA Intergenic AluSx|SINE|Alu -147401 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 674-11 chr10 82431161 82431589 + 2 NA intron (NR_163253, intron 3 of 10) L1M4|LINE|L1 -198455 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 498-166 chr3 43165975 43166322 + 2 NA Intergenic L1M4|LINE|L1 -60069 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 487-30 chr1 214150735 214151201 + 2 NA Intergenic L2b|LINE|L2 -130191 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 274-21 chr1 194648557 194648759 + 2 NA Intergenic Intergenic 1343913 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 748-34 chr15 23828335 23828989 + 2 NA Intergenic L1MB3|LINE|L1 -141357 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 485-261 chr7 36560146 36560566 + 2 NA intron (NM_001177507, intron 12 of 19) L1PA16|LINE|L1 39764 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 394-188 chr2 175336440 175336827 + 2 NA Intergenic L1MA4A|LINE|L1 -154923 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 348-520 chr8 78382712 78382944 + 2 NA Intergenic L1MC5|LINE|L1 -133512 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 213-247 chr5 173423339 173423511 + 2 NA Intergenic Intergenic 75970 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 412-332 chr8 122020537 122020767 + 2 NA Intergenic Intergenic -379212 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 235-264 chr4 101949856 101950010 + 2 NA intron (NM_017935, intron 7 of 16) intron (NM_017935, intron 7 of 16) 136091 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 124-35 chr2 115544039 115544143 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 200276 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 329-519 chr7 1798121 1798422 + 2 NA Intergenic L1ME3A|LINE|L1 45982 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 355-549 chrX 140596065 140596401 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -91173 NM_005634 6658 Hs.157429 NM_005634 ENSG00000134595 SOX3 GHDX|MRGH|PHP|PHPX|SOXB SRY-box transcription factor 3 protein-coding 270-22 chr1 208480439 208480631 + 2 NA Intergenic Intergenic -236151 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 374-332 chr6 27874028 27874284 + 2 NA promoter-TSS (NM_003546) promoter-TSS (NM_003546) -645 NM_003546 8368 Hs.533295 NM_003546 ENSG00000275126 HIST1H4L H4.k|H4/k|H4FK histone cluster 1 H4 family member l protein-coding 463-304 chr9 30912663 30912912 + 2 NA Intergenic Intergenic 468703 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 349-460 chr6 131898646 131898861 + 2 NA Intergenic Intergenic 52619 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 300-112 chr14 51026979 51027223 + 2 NA intron (NM_015163, intron 1 of 9) MIR|SINE|MIR 68603 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 224-230 chr4 119664524 119664735 + 2 NA Intergenic MIRb|SINE|MIR -35825 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 600-40 chr16 5406335 5406738 + 2 NA Intergenic MLT2B1|LTR|ERVL 209714 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 328-504 chr6 76546200 76546473 + 2 NA intron (NR_149101, intron 2 of 2) L1MC2|LINE|L1 47287 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 407-353 chrX 58170877 58171151 + 2 NA Intergenic ALR/Alpha|Satellite|centr -260381 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 518-124 chr2 33824174 33824537 + 2 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -96138 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 267-121 chr15 34697261 34697441 + 2 NA Intergenic MER34C_|LTR|ERV1 -41587 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 326-314 chr22 30125548 30125806 + 2 NA intron (NM_001329457, intron 11 of 11) L1ME3B|LINE|L1 45213 NM_001329457 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 281-309 chr4 41341972 41342159 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -17542 NM_001289124 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 291-362 chr5 113640062 113640290 + 2 NA Intergenic Intergenic 126482 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 548-91 chr17 26851029 26851421 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 238016 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 284-17 chr1 119820257 119820499 + 2 NA Intergenic L1ME3|LINE|L1 -8918 NM_032044 83998 Hs.660883 NM_032044 ENSG00000134193 REG4 GISP|REG-IV|RELP regenerating family member 4 protein-coding 116-2 chr1 180080755 180080832 + 2 NA intron (NM_014810, intron 30 of 37) intron (NM_014810, intron 30 of 37) -74040 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 187-135 chr5 6917381 6917513 + 2 NA Intergenic L1PB1|LINE|L1 -89526 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 354-175 chr17 73967090 73967337 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -138676 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 359-273 chr2 236479426 236479626 + 2 NA intron (NR_073043, intron 5 of 19) L1MA4|LINE|L1 24171 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 184-144 chr6 84608194 84608371 + 2 NA Intergenic Intergenic -81176 NR_125877 102724201 Hs.667523 NR_125875 ENSG00000228290 TBX18-AS1 - TBX18 antisense RNA 1 ncRNA 332-153 chr14 68489621 68489812 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 139071 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 340-170 chr15 59973263 59973440 + 2 NA Intergenic Intergenic -30960 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 282-475 chr8 142834148 142834337 + 2 NA promoter-TSS (NM_002066) promoter-TSS (NM_002066) -559 NM_002066 2765 Hs.661218 NM_002066 ENSG00000104499 GML LY6DL glycosylphosphatidylinositol anchored molecule like protein-coding 430-222 chr4 113380710 113381056 + 2 NA intron (NM_001354257, intron 44 of 44) intron (NM_001354257, intron 44 of 44) 88044 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 518-196 chr4 42857402 42857823 + 2 NA Intergenic Intergenic -35654 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 201-40 chr10 129489743 129489871 + 2 NA intron (NM_002412, intron 1 of 4) L1ME3Cz|LINE|L1 22566 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 488-50 chr11 75031193 75031478 + 2 NA Intergenic Intergenic 42402 NM_001367867 10825 Hs.191074 NM_006656 ENSG00000162139 NEU3 SIAL3 neuraminidase 3 protein-coding 339-101 chr11 74764150 74764346 + 2 NA intron (NM_001098638, intron 1 of 5) L1ME3C|LINE|L1 15399 NM_001098638 254225 Hs.370145 NM_001098638 ENSG00000166439 RNF169 - ring finger protein 169 protein-coding 534-127 chr2 132677798 132678173 + 2 NA intron (NM_207481, intron 17 of 17) intron (NM_207481, intron 17 of 17) -6459 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 446-104 chr14 83522965 83523338 + 2 NA Intergenic Intergenic 880519 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 391-182 chr2 100532036 100532373 + 2 NA Intergenic AluSx3|SINE|Alu -30789 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 323-463 chr6 74622424 74622662 + 2 NA intron (NR_110856, intron 2 of 3) THE1D|LTR|ERVL-MaLR 506239 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 333-37 chr1 189273801 189273986 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 1202117 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 467-96 chr16 6251627 6251970 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 232095 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 151-66 chr5 167500366 167500508 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -73222 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 407-13 chr1 189992903 189993231 + 2 NA Intergenic Intergenic 482943 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 238-4 chr1 34370240 34370417 + 2 NA Intergenic Intergenic 193421 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 597-129 chr8 13625702 13626198 + 2 NA Intergenic Intergenic -3740 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 197-119 chr21 15383228 15383418 + 2 NA Intergenic L2c|LINE|L2 -318323 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 255-124 chr15 49759078 49759324 + 2 NA Intergenic Intergenic 138153 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 277-111 chr14 41849521 41849723 + 2 NA intron (NM_001330106, intron 2 of 4) intron (NM_001330106, intron 2 of 4) 242766 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 270 chr1 2966225 2966377 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -55166 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 326-198 chr17 61403622 61403882 + 2 NA intron (NM_005994, intron 3 of 6) CpG-11509 3909 NM_005994 6909 Hs.531085 NM_005994 ENSG00000121068 TBX2 VETD T-box transcription factor 2 protein-coding 826-33 chr20 30607718 30608386 + 2 NA Intergenic Intergenic -204590 NR_045115 140678 Hs.653099 NR_045115 MLLT10P1 MLLT10L|bA348I14.3 MLLT10 pseudogene 1 pseudo 228-133 chr17 64409428 64409610 + 2 NA Intergenic Tigger12c|DNA|TcMar-Tigger -18659 NM_000442 5175 Hs.376675 NM_000442 ENSG00000261371 PECAM1 CD31|CD31/EndoCAM|GPIIA'|PECA1|PECAM-1|endoCAM platelet and endothelial cell adhesion molecule 1 protein-coding 340-167 chr15 46560962 46561151 + 2 NA Intergenic L1MA2|LINE|L1 -623033 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 419-86 chr14 30234472 30234852 + 2 NA Intergenic Intergenic -306815 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 232-393 chr8 142961126 142961305 + 2 NA Intergenic MER41-int|LTR|ERV1 -34613 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 164-95 chr5 26385178 26385309 + 2 NA Intergenic Intergenic 653343 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 358-301 chr3 100976137 100976403 + 2 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 17220 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 307-291 chr3 6700626 6700810 + 2 NA intron (NR_110123, intron 2 of 3) L1PA15|LINE|L1 104731 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 315-468 chr8 50367125 50367387 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 203125 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 308-539 chr9 89693772 89693978 + 2 NA intron (NR_024280, intron 3 of 5) intron (NR_024280, intron 3 of 5) 54092 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 282-302 chr3 84942003 84942185 + 2 NA Intergenic Intergenic -16895 NM_001167674 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 308-176 chr16 82089805 82090051 + 2 NA intron (NM_002153, intron 3 of 4) intron (NM_002153, intron 3 of 4) 54675 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 324-360 chr3 105972867 105973095 + 2 NA Intergenic Intergenic -103580 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 414-98 chr15 80265830 80266065 + 2 NA intron (NR_033833, intron 2 of 2) L1MB7|LINE|L1 -13734 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 385-366 chr7 120000418 120000643 + 2 NA Intergenic L1MCb|LINE|L1 -93155 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 366-341 chr5 41472414 41472751 + 2 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 38019 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 232-320 chr6 19477979 19478185 + 2 NA Intergenic Intergenic 28261 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 243-244 chr2 195492364 195492545 + 2 NA Intergenic MIRb|SINE|MIR -164504 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 334-481 chr6 163232423 163232613 + 2 NA intron (NM_001080379, intron 4 of 4) GA-rich|Low_complexity|Low_complexity -40516 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 361-436 chr8 60675915 60676179 + 2 NA Intergenic Intergenic -2693 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 177-115 chr4 46998883 46999018 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -5369 NM_000809 2557 Hs.248112 NM_000809 ENSG00000109158 GABRA4 - gamma-aminobutyric acid type A receptor alpha4 subunit protein-coding 299-347 chr4 177196617 177196784 + 2 NA Intergenic L1M4b|LINE|L1 -113174 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 674-48 chr2 121166006 121166494 + 2 NA Intergenic AluSq2|SINE|Alu 118952 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 223-172 chr2 188356894 188357043 + 2 NA intron (NR_045563, intron 2 of 12) L1MA5|LINE|L1 59476 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 250-64 chr11 55060876 55061081 + 2 NA Intergenic ALR/Alpha|Satellite|centr -201177 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 240-278 chr3 1530017 1530234 + 2 NA Intergenic Intergenic 437101 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 469-251 chr6 143126428 143126707 + 2 NA intron (NM_001366358, intron 1 of 5) intron (NM_001366358, intron 1 of 5) 428 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 616-136 chr5 99849542 99850019 + 2 NA Intergenic Intergenic 315790 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 279-83 chr12 90404820 90405021 + 2 NA Intergenic L1MC5|LINE|L1 111602 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 379-194 chr20 58063136 58063392 + 2 NA Intergenic L1MEc|LINE|L1 59360 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 503-189 chr3 16099572 16099924 + 2 NA Intergenic Intergenic -74932 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 233-308 chr5 92335855 92336042 + 2 NA Intergenic Intergenic -952631 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 363-101 chr12 48487557 48487766 + 2 NA intron (NM_152319, intron 4 of 8) intron (NM_152319, intron 4 of 8) 5163 NM_152319 121273 Hs.98202 NM_152319 ENSG00000177627 C12orf54 HSD-29|HSD-30 chromosome 12 open reading frame 54 protein-coding 184-154 chr7 14873463 14873624 + 2 NA intron (NM_001350717, intron 1 of 24) intron (NM_001350717, intron 1 of 24) 29208 NM_001350723 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 175-85 chr2 170649409 170649568 + 2 NA intron (NR_045683, intron 33 of 35) intron (NR_045683, intron 33 of 35) 65079 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 310-258 chr2 123923339 123923616 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 101697 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 192-19 chr10 39519091 39519255 + 2 NA Intergenic ALR/Alpha|Satellite|centr 822577 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 351-486 chr8 81450978 81451218 + 2 NA Intergenic L1MEg|LINE|L1 -3659 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 336-356 chr22 47268984 47269185 + 2 NA Intergenic Intergenic -76487 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 535-101 chr17 6124962 6125321 + 2 NA TTS (NM_015253) TTS (NM_015253) 54527 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 437-18 chr10 16936363 16936653 + 2 NA intron (NM_001081, intron 39 of 66) intron (NM_001081, intron 39 of 66) -119054 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 633-125 chr9 25500591 25501044 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 178041 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 269-98 chr12 114259947 114260119 + 2 NA Intergenic L1ME4a|LINE|L1 -18263 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 371-2 chr1 37205444 37205649 + 2 NA Intergenic L1MA7|LINE|L1 43983 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 434-327 chrX 106562104 106562471 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -49643 NM_001184782 55086 Hs.274267 NM_018015 ENSG00000147231 RADX CXorf57 RPA1 related single stranded DNA binding protein, X-linked protein-coding 297-126 chr14 24658374 24658571 + 2 NA Intergenic Intergenic -24282 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 673-114 chr8 32946885 32947360 + 2 NA Intergenic L1M4|LINE|L1 225287 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 211-310 chr8 124926042 124926215 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -15880 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 211-237 chr5 64051609 64051810 + 2 NA Intergenic Intergenic -89417 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 282-12 chr1 107585757 107585987 + 2 NA intron (NM_006113, intron 25 of 26) intron (NM_006113, intron 25 of 26) 102627 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 265-399 chr8 117763975 117764202 + 2 NA Intergenic Intergenic 156825 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 459-210 chr4 63420604 63420935 + 2 NA Intergenic LTR8B|LTR|ERV1 988681 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 160-46 chr2 147871196 147871300 + 2 NA intron (NM_001278579, intron 2 of 11) intron (NM_001278579, intron 2 of 11) 26219 NM_001616 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 322-68 chr10 77965989 77966195 + 2 NA Intergenic AluSc|SINE|Alu 39280 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 470-24 chr10 56148010 56148315 + 2 NA Intergenic Intergenic 213097 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 261-375 chr8 69567663 69567861 + 2 NA intron (NR_156414, intron 4 of 20) L1MB2|LINE|L1 -25138 NR_132437 23213 Hs.409602 NM_015170 ENSG00000137573 SULF1 SULF-1 sulfatase 1 protein-coding 268-354 chr6 131636649 131636814 + 2 NA promoter-TSS (NM_005021) promoter-TSS (NM_005021) -571 NM_005021 5169 Hs.486489 NM_005021 ENSG00000154269 ENPP3 B10|CD203c|NPP3|PD-IBETA|PDNP3 ectonucleotide pyrophosphatase/phosphodiesterase 3 protein-coding 328-142 chr14 43104987 43105265 + 2 NA Intergenic L1ME2z|LINE|L1 1402157 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 306-556 chrX 45156145 45156393 + 2 NA intron (NM_176819, intron 3 of 4) AluSx|SINE|Alu 44607 NM_024689 79742 Hs.98321 NM_024689 ENSG00000147113 DIPK2B 4930578C19Rik|CXorf36|DIA1R|EPQL1862|PRO3743|bA435K1.1 divergent protein kinase domain 2B protein-coding 146-26 chr14 81617001 81617129 + 2 NA intron (NR_110074, intron 1 of 2) LTR8B|LTR|ERV1 5996 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 192-128 chr22 19551336 19551484 + 2 NA Intergenic L1MB5|LINE|L1 15429 NR_024381 150185 Hs.719752 NR_024381 LINC00895 - long intergenic non-protein coding RNA 895 ncRNA 460-43 chr11 28604381 28604756 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -127020 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 351-444 chr7 36671050 36671332 + 2 NA intron (NM_001177507, intron 2 of 19) intron (NM_001177507, intron 2 of 19) 53303 NM_001637 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 371-413 chr9 81463524 81463823 + 2 NA Intergenic Intergenic 225862 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 278-168 chr18 4854812 4855030 + 2 NA Intergenic Intergenic -226261 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 407-60 chr12 14306261 14306650 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -59177 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 413-102 chr15 92363539 92363917 + 2 NA Intergenic Intergenic -30153 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 491-27 chr11 3212176 3212587 + 2 NA Intergenic L1MEb|LINE|L1 -5951 NR_027138 283303 Hs.151154 NM_173590 ENSG00000236301 MRGPRG-AS1 C11orf36|HSD-40 MRGPRG antisense RNA 1 ncRNA 170-23 chr10 123719241 123719393 + 2 NA Intergenic L1ME1|LINE|L1 52962 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 515-265 chr8 88564815 88565153 + 2 NA Intergenic L1MA4|LINE|L1 -237501 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 308-218 chr2 31203630 31203908 + 2 NA intron (NM_001145122, intron 2 of 21) intron (NM_001145122, intron 2 of 21) 13746 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 344-76 chr11 42173928 42174197 + 2 NA Intergenic MIRb|SINE|MIR 79628 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 246-274 chr3 132071388 132071586 + 2 NA Intergenic LTR85b|LTR|Gypsy? -31881 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 505-321 chr9 24360499 24360976 + 2 NA Intergenic Intergenic 184939 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 348-130 chr14 23333344 23333527 + 2 NA Intergenic L1M4|LINE|L1 11429 NM_001360552 8106 Hs.707712 NM_004643 ENSG00000100836 PABPN1 OPMD|PAB2|PABII|PABP-2|PABP2 poly(A) binding protein nuclear 1 protein-coding 624-97 chr5 35050963 35051418 + 2 NA intron (NM_001204318, intron 6 of 6) L2b|LINE|L2 -3241 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 173-22 chr11 109260906 109261064 + 2 NA Intergenic L1MA10|LINE|L1 -161205 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 333-536 chr7 51767636 51767876 + 2 NA Intergenic Intergenic -374500 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 195-114 chr2 133279554 133279724 + 2 NA intron (NR_110294, intron 4 of 4) intron (NR_110294, intron 4 of 4) 13444 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 249-79 chr11 99635664 99635894 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 79634 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 240-293 chr3 118655275 118655426 + 2 NA intron (NR_135547, intron 2 of 3) L1M1|LINE|L1 13582 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 479-69 chr14 86749673 86750058 + 2 NA Intergenic L1PA6|LINE|L1 -155913 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 253-280 chr3 185093105 185093275 + 2 NA intron (NM_001025266, intron 1 of 1) intron (NM_001025266, intron 1 of 1) 59870 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 204-193 chr3 34636807 34636955 + 2 NA Intergenic Intergenic 757142 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 369-279 chr4 16516193 16516479 + 2 NA intron (NM_001304435, intron 5 of 7) intron (NM_001304435, intron 5 of 7) 289673 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 269-393 chr8 47355644 47355848 + 2 NA intron (NR_104581, intron 5 of 16) intron (NR_104581, intron 5 of 16) 94808 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 252-65 chr11 38262873 38263061 + 2 NA Intergenic L1MA6|LINE|L1 324366 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 336-89 chr11 39613654 39613883 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 679362 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 158-112 chr8 40447665 40447791 + 2 NA Intergenic Intergenic -104365 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 254-38 chr10 37808834 37809020 + 2 NA intron (NM_001352493, intron 5 of 6) L1M4c|LINE|L1 -13752 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 360-207 chr2 28416367 28416688 + 2 NA 3' UTR (NM_005253, exon 4 of 4) 3' UTR (NM_005253, exon 4 of 4) -21855 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 359-38 chr1 210755791 210756106 + 2 NA intron (NM_002238, intron 10 of 10) intron (NM_002238, intron 10 of 10) 377426 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 497-230 chr5 86240134 86240592 + 2 NA Intergenic L1MEi|LINE|L1 -42081 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 398-90 chr13 84204423 84204786 + 2 NA intron (NR_046871, intron 1 of 6) L2a|LINE|L2 64002 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 326-382 chr4 126240165 126240347 + 2 NA Intergenic L1MC1|LINE|L1 732997 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 181-14 chr10 51603376 51603528 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 96143 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 297-155 chr16 5074523 5074737 + 2 NA intron (NM_019109, intron 3 of 12) L1ME3G|LINE|L1 2382 NM_001330504 56052 Hs.592086 NM_019109 ENSG00000033011 ALG1 CDG1K|HMAT1|HMT-1|HMT1|MT-1|Mat-1|hMat-1 ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase protein-coding 402-37 chr10 85090968 85091355 + 2 NA Intergenic L1MB1|LINE|L1 107744 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 517-277 chr8 127344874 127345240 + 2 NA intron (NR_117099, intron 3 of 3) LTR16E2|LTR|ERVL -55342 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 317-239 chr2 102370254 102370429 + 2 NA intron (NM_003855, intron 3 of 10) intron (NM_003855, intron 3 of 10) 14058 NM_003855 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 446-330 chr9 95178835 95179174 + 2 NA intron (NM_001243744, intron 4 of 13) intron (NM_001243744, intron 4 of 13) -92910 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 195-30 chr10 95254921 95255070 + 2 NA intron (NM_020992, intron 4 of 6) L1MB2|LINE|L1 36008 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 409-65 chr13 76216074 76216312 + 2 NA Intergenic L2a|LINE|L2 -281061 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 448-169 chr3 145635980 145636306 + 2 NA Intergenic Intergenic 433042 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 312-193 chr17 74295723 74295980 + 2 NA intron (NM_023036, intron 6 of 13) L1M4|LINE|L1 21617 NR_148379 64446 Hs.147472 NM_023036 ENSG00000171595 DNAI2 CILD9|DIC2 dynein axonemal intermediate chain 2 protein-coding 228-275 chr5 113360409 113360608 + 2 NA intron (NM_001085377, intron 2 of 18) intron (NM_001085377, intron 2 of 18) -65570 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 213-278 chr8 88860749 88860904 + 2 NA Intergenic Intergenic -533343 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 467-119 chr18 55699557 55699990 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -63816 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 284-194 chr2 42011863 42012127 + 2 NA Intergenic MIR|SINE|MIR -36026 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 368-357 chr5 33380220 33380490 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -60341 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 189-125 chr3 67051733 67051865 + 2 NA Intergenic L1M5|LINE|L1 53492 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 314-336 chr20 9663062 9663294 + 2 NA intron (NM_020341, intron 3 of 10) intron (NM_020341, intron 3 of 10) -148180 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 297-450 chr7 146108489 146108720 + 2 NA Intergenic Intergenic -665667 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 860-30 chr2 164879998 164880665 + 2 NA Intergenic Intergenic -38255 NM_001278458 22837 Hs.470457 NM_014900 ENSG00000082438 COBLL1 COBLR1 cordon-bleu WH2 repeat protein like 1 protein-coding 211-240 chr5 99266058 99266228 + 2 NA Intergenic L1M3|LINE|L1 -267847 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 280-142 chr15 93664326 93664500 + 2 NA Intergenic Intergenic -192147 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 439-142 chr2 133306894 133307219 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 40861 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 537-272 chr9 69803120 69803535 + 2 NA Intergenic L2a|LINE|L2 17412 NR_038833 494558 Hs.130722 NR_038833 ENSG00000225626 C9orf135-DT C9orf135-AS1 C9orf135 divergent transcript ncRNA 262-287 chr3 105164637 105164787 + 2 NA Intergenic L2a|LINE|L2 -202001 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 269-47 chr10 66392956 66393148 + 2 NA intron (NM_001127384, intron 11 of 17) L1MC2|LINE|L1 -532984 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 247-308 chr4 149771761 149771936 + 2 NA intron (NM_001363507, intron 2 of 13) intron (NM_001363507, intron 2 of 13) 43995 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 397-43 chr10 111098158 111098398 + 2 NA Intergenic Intergenic -16013 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 320-370 chr3 190034040 190034277 + 2 NA intron (NM_001134418, intron 1 of 14) intron (NM_001134418, intron 1 of 14) 86739 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 128-48 chr5 26761590 26761710 + 2 NA Intergenic Intergenic 276936 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 356-130 chr13 70675622 70675817 + 2 NA Intergenic Intergenic -339422 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 410-70 chr12 74501483 74501864 + 2 NA Intergenic L1MC|LINE|L1 -36162 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 585-141 chr6 110026306 110026779 + 2 NA Intergenic L1ME4c|LINE|L1 48231 NM_005284 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 494-270 chr7 71531388 71531842 + 2 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -223845 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 389-102 chr14 60875149 60875467 + 2 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 105771 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 295-74 chr11 57955649 57955807 + 2 NA Intergenic L2a|LINE|L2 -68153 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 386-224 chr22 49211634 49211883 + 2 NA Intergenic Intergenic 331708 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 322-120 chr12 30617684 30617929 + 2 NA Intergenic Intergenic 59438 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 523-163 chr21 35783105 35783459 + 2 NA Intergenic Intergenic 62567 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 237-284 chr5 13523977 13524203 + 2 NA Intergenic Intergenic 420390 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 233-207 chr20 51394409 51394634 + 2 NA intron (NM_001258295, intron 9 of 9) intron (NM_001258295, intron 9 of 9) 58456 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 514-145 chr2 78870086 78870539 + 2 NA Intergenic Intergenic -155390 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 385-150 chr18 69828764 69829111 + 2 NA intron (NM_152721, intron 7 of 7) HAL1|LINE|L1 118936 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 380-21 chr1 164453269 164453589 + 2 NA Intergenic L1MB7|LINE|L1 -105931 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 353-506 chr8 20892692 20892949 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -60813 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 524-92 chr17 72787571 72787924 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -147275 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 579-178 chr8 134370959 134371322 + 2 NA Intergenic Intergenic -226931 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 223-227 chr3 136074897 136075069 + 2 NA intron (NM_181897, intron 5 of 12) Charlie25|DNA|hAT-Charlie 52241 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 360-104 chr13 45855842 45856162 + 2 NA Intergenic MIRb|SINE|MIR -4249 NM_198849 283514 Hs.368483 NM_198849 ENSG00000215475 SIAH3 - siah E3 ubiquitin protein ligase family member 3 protein-coding 122-31 chr21 23266285 23266373 + 2 NA Intergenic Intergenic 118506 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 611-11 chr10 34873492 34873969 + 2 NA Intergenic L1MC1|LINE|L1 57962 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 224-244 chr5 26052144 26052277 + 2 NA Intergenic Intergenic 861257 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 290-238 chr20 2727732 2727943 + 2 NA intron (NM_001110514, intron 7 of 17) L1MB2|LINE|L1 34959 NM_001110514 57593 Hs.471955 NM_020833 ENSG00000088881 EBF4 COE4|O/E-4 EBF family member 4 protein-coding 446-300 chr8 68762724 68763095 + 2 NA intron (NM_001349479, intron 9 of 11) intron (NM_001349479, intron 9 of 11) 341281 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 225-54 chr11 28611094 28611262 + 2 NA Intergenic Intergenic -133630 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 358-253 chr20 20030826 20031035 + 2 NA intron (NM_181528, intron 4 of 4) L1ME4b|LINE|L1 13135 NM_181527 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 276-203 chr18 57136630 57136834 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -10355 NM_001257964 284257 Hs.127882 NM_001257964 ENSG00000228075 BOD1L2 BOD1P|FAM44C biorientation of chromosomes in cell division 1 like 2 protein-coding 493-245 chr5 92985447 92985916 + 2 NA Intergenic L1MCb|LINE|L1 585662 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 324-543 chr8 120228165 120228406 + 2 NA intron (NM_021110, intron 17 of 47) intron (NM_021110, intron 17 of 47) 103183 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 376-238 chr3 32220024 32220214 + 2 NA Intergenic MIRc|SINE|MIR -18560 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 231-139 chr18 70380911 70381132 + 2 NA non-coding (NR_110764, exon 3 of 3) non-coding (NR_110764, exon 3 of 3) 3570 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 313-145 chr14 58049288 58049496 + 2 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 102821 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 379-86 chr13 108241764 108242103 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 23541 NM_032859 84945 Hs.183528 NM_032859 ENSG00000139826 ABHD13 BEM46L1|C13orf6|bA153I24.2 abhydrolase domain containing 13 protein-coding 322-575 chr9 126883725 126883898 + 2 NA 3' UTR (NM_001099270, exon 2 of 2) 3' UTR (NM_001099270, exon 2 of 2) 23172 NM_001099270 403341 Hs.177633 NM_203482 ENSG00000177125 ZBTB34 ZNF918 zinc finger and BTB domain containing 34 protein-coding 194-5 chr1 41836641 41836825 + 2 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 82189 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 397-59 chr11 115806439 115806754 + 2 NA Intergenic Intergenic -46396 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 314-241 chr18 42538589 42538846 + 2 NA intron (NR_046174, intron 6 of 9) intron (NR_046174, intron 6 of 9) 352049 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 653-30 chr12 58435209 58435859 + 2 NA Intergenic Intergenic -156168 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 272-166 chr18 51858515 51858712 + 2 NA Intergenic Intergenic 466571 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 526-209 chr6 37652471 37652994 + 2 NA intron (NM_153487, intron 6 of 16) MIR|SINE|MIR 45151 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 309-293 chr2 233556431 233556694 + 2 NA intron (NM_001365479, intron 5 of 31) intron (NM_001365479, intron 5 of 31) 9011 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 455-248 chr6 132245096 132245488 + 2 NA Intergenic Intergenic 111314 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 338-598 chr9 104621353 104621598 + 2 NA Intergenic Intergenic -3271 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 413-172 chr21 19206056 19206415 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -446423 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 320-279 chr2 136246456 136246688 + 2 NA Intergenic Intergenic -128417 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 336-166 chr14 66033370 66033573 + 2 NA Intergenic Intergenic -452900 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 231-81 chr13 44162162 44162328 + 2 NA promoter-TSS (NM_024058) promoter-TSS (NM_024058) -988 NM_024058 79024 Hs.730073 NM_024058 ENSG00000139656 SMIM2 C13orf44 small integral membrane protein 2 protein-coding 405-18 chr1 192479526 192479881 + 2 NA Intergenic Intergenic -96070 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 409-316 chr9 135241432 135241773 + 2 NA Intergenic Intergenic 59993 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 469-128 chr2 55066354 55066643 + 2 NA intron (NM_001321904, intron 2 of 9) AluSx1|SINE|Alu -15226 NM_001321859 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 358-31 chr1 247588486 247588755 + 2 NA exon (NM_001001915, exon 1 of 1) exon (NM_001001915, exon 1 of 1) 260 NM_001001915 81470 Hs.690208 NM_001001915 ENSG00000177489 OR2G2 OR1-32 olfactory receptor family 2 subfamily G member 2 protein-coding 725-26 chr17 55914553 55915139 + 2 NA Intergenic LTR85b|LTR|Gypsy? 163741 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 354-260 chr20 40728530 40728738 + 2 NA Intergenic Intergenic -14011 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 411-60 chr11 109323316 109323581 + 2 NA Intergenic L1MC4a|LINE|L1 -98742 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 628-10 chr1 80125642 80126110 + 2 NA Intergenic L1MA10|LINE|L1 -409879 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 303-427 chr7 53967717 53967883 + 2 NA Intergenic Intergenic -155869 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 202-147 chr21 25481122 25481280 + 2 NA Intergenic L1M2c|LINE|L1 -49500 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 481-223 chr4 88786484 88786864 + 2 NA intron (NM_001015045, intron 4 of 17) intron (NM_001015045, intron 4 of 17) 36687 NM_001265578 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 411-122 chr17 79553742 79554100 + 2 NA intron (NM_001350451, intron 1 of 14) AluSq|SINE|Alu -37773 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 393-314 chr6 130482302 130482577 + 2 NA Intergenic L1PA15|LINE|L1 45322 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 302-432 chr8 19208604 19208813 + 2 NA intron (NR_038919, intron 3 of 4) intron (NR_038919, intron 3 of 4) 36814 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 323-14 chr1 90880876 90881158 + 2 NA Intergenic L1M4|LINE|L1 29258 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 354-233 chr2 162592515 162592747 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -176305 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 191-12 chr1 110517716 110517874 + 2 NA exon (NM_005549, exon 1 of 1) exon (NM_005549, exon 1 of 1) 1380 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 417-289 chr8 127173723 127174023 + 2 NA Intergenic MER96|DNA|hAT-Tip100 23754 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 258-323 chr5 64401677 64401901 + 2 NA Intergenic Intergenic -104226 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 228-176 chr2 134557861 134558022 + 2 NA intron (NM_030923, intron 2 of 7) MER4A|LTR|ERV1 161059 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 304-290 chr2 240863874 240864058 + 2 NA Intergenic MER84-int|LTR|ERV1 -4858 NM_000030 189 Hs.144567 NM_000030 ENSG00000172482 AGXT AGT|AGT1|AGXT1|PH1|SPAT|SPT|TLH6 alanine--glyoxylate and serine--pyruvate aminotransferase protein-coding 520-183 chr3 28109196 28109630 + 2 NA Intergenic Intergenic -132206 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 139-77 chr6 45536455 45536544 + 2 NA intron (NM_001015051, intron 7 of 7) intron (NM_001015051, intron 7 of 7) 114224 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 220-209 chr21 30388220 30388368 + 2 NA Intergenic Intergenic -7737 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 243-405 chr6 159464411 159464607 + 2 NA Intergenic Intergenic 80978 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 568-14 chr10 60057370 60057815 + 2 NA intron (NM_001204403, intron 41 of 43) intron (NM_001204403, intron 41 of 43) 83424 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 148-54 chr3 39715119 39715239 + 2 NA Intergenic L1MEf|LINE|L1 -93735 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 263-221 chr2 170904265 170904447 + 2 NA Intergenic L1MD|LINE|L1 -24121 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 547-213 chr7 19652181 19652549 + 2 NA Intergenic L1PREC2|LINE|L1 53071 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 377-137 chr15 72959094 72959289 + 2 NA Intergenic L1M6|LINE|L1 -93272 NM_002499 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 375-397 chr8 4779352 4779636 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 215420 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 454-23 chr10 29939166 29939563 + 2 NA Intergenic Intergenic 120222 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 727-79 chr8 32608917 32609486 + 2 NA intron (NM_001160001, intron 2 of 9) intron (NM_001160001, intron 2 of 9) 13375 NM_001322202 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 251-58 chr11 119012453 119012652 + 2 NA intron (NR_104051, intron 8 of 10) intron (NR_104051, intron 8 of 10) 5791 NM_001028 6230 Hs.512676 NM_001028 ENSG00000118181 RPS25 S25 ribosomal protein S25 protein-coding 233-109 chr15 67248189 67248356 + 2 NA intron (NM_001271885, intron 1 of 9) intron (NM_001271885, intron 1 of 9) 6389 NM_024666 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 343-175 chr16 20036596 20036910 + 2 NA intron (NM_001002911, intron 1 of 1) THE1B|LTR|ERVL-MaLR 37025 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 409-136 chr2 35704779 35705059 + 2 NA Intergenic Intergenic 233514 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 303-205 chr2 54231695 54231924 + 2 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 24420 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 314-32 chr1 172229396 172229595 + 2 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -84660 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 260-321 chr4 112638844 112639063 + 2 NA intron (NM_001370978, intron 2 of 13) intron (NM_001370978, intron 2 of 13) 1451 NM_001370980 462-262 chr7 41849708 41850113 + 2 NA Intergenic L3|LINE|CR1 -146820 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 123-5 chr10 32429388 32429461 + 2 NA Intergenic L1ME3G|LINE|L1 16632 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 383-50 chr11 39227062 39227398 + 2 NA Intergenic Intergenic 578372 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 226-118 chr16 68832165 68832314 + 2 NA intron (NM_001317185, intron 15 of 15) L1PA14|LINE|L1 -11292 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 141-3 chr1 56157510 56157605 + 2 NA Intergenic Intergenic 212470 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 180-51 chr15 57077379 57077519 + 2 NA intron (NM_001322158, intron 5 of 20) intron (NM_001322158, intron 5 of 20) -141981 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 376-179 chr2 57448551 57448887 + 2 NA Intergenic Intergenic -458932 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 197-149 chr4 43023621 43023771 + 2 NA intron (NM_001080476, intron 3 of 3) L2a|LINE|L2 130430 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 598-122 chr6 133171742 133172255 + 2 NA Intergenic L1ME3E|LINE|L1 -69359 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 326-258 chr2 119865377 119865568 + 2 NA intron (NM_002830, intron 3 of 26) MIRb|SINE|MIR 105550 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 342-325 chr3 97387190 97387488 + 2 NA intron (NM_001080448, intron 5 of 17) MSTA-int|LTR|ERVL-MaLR -52268 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 222-314 chr6 993863 993990 + 2 NA intron (NR_027116, intron 2 of 3) (CTAT)n|Simple_repeat|Simple_repeat 107406 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 427-284 chr9 114298945 114299287 + 2 NA intron (NM_032888, intron 49 of 60) intron (NM_032888, intron 49 of 60) -23907 NM_000607 5004 Hs.522356 NM_000607 ENSG00000229314 ORM1 AGP-A|AGP1|HEL-S-153w|ORM orosomucoid 1 protein-coding 186-147 chr7 31120201 31120333 + 2 NA Intergenic Intergenic 67806 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 739-53 chr4 73738326 73738854 + 2 NA Intergenic L2c|LINE|L2 -1979 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 357-99 chr13 102435339 102435682 + 2 NA Intergenic Intergenic -33067 NM_001321947 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 155-65 chr3 30172332 30172463 + 2 NA Intergenic Intergenic -238241 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 328-289 chr2 167056402 167056681 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 84414 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 340-517 chr7 132672509 132672792 + 2 NA intron (NR_046323, intron 3 of 4) intron (NR_046323, intron 3 of 4) 23856 NR_046323 286023 Hs.671875 NM_173682 ENSG00000183470 FLJ40288 - uncharacterized FLJ40288 ncRNA 132-13 chr11 21987978 21988079 + 2 NA Intergenic Intergenic -205057 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 163-106 chr5 170558774 170558923 + 2 NA intron (NM_001278339, intron 1 of 7) intron (NM_001278339, intron 1 of 7) 54828 NM_014592 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 241-111 chr14 58647237 58647442 + 2 NA non-coding (NR_046095, exon 4 of 4) non-coding (NR_046095, exon 4 of 4) 8502 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 408-30 chr1 219058384 219058749 + 2 NA intron (NR_031644, intron 6 of 6) L1MB1|LINE|L1 115222 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 409-216 chr4 32352496 32352757 + 2 NA non-coding (NR_134672, exon 2 of 2) non-coding (NR_134672, exon 2 of 2) 1588 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 313-499 chr7 62672989 62673191 + 2 NA Intergenic ALR/Alpha|Satellite|centr 630966 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 261-37 chr10 58519860 58520027 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 7071 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 432-270 chr7 52243592 52243927 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -791874 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 225-310 chr6 74224821 74225013 + 2 NA intron (NR_110856, intron 1 of 3) L1MDa|LINE|L1 155466 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 245-64 chr11 10234193 10234387 + 2 NA intron (NM_030962, intron 1 of 39) intron (NM_030962, intron 1 of 39) 59917 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 331-567 chrX 57027200 57027480 + 2 NA Intergenic L1PA10|LINE|L1 -31799 NM_001010862 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 411-238 chr5 125930972 125931343 + 2 NA Intergenic L1MEf|LINE|L1 -248420 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 217-274 chr4 127225560 127225718 + 2 NA Intergenic MIR|SINE|MIR -407318 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 277-38 chr10 9844883 9845150 + 2 NA Intergenic L2a|LINE|L2 -213706 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 440-90 chr17 38960192 38960513 + 2 NA intron (NM_001008777, intron 3 of 10) intron (NM_001008777, intron 3 of 10) 7051 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 536-216 chr7 53681705 53682173 + 2 NA intron (NR_038371, intron 5 of 5) AluYb8|SINE|Alu 129992 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 339-240 chr2 6467268 6467475 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -91949 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 277-401 chr8 40626932 40627173 + 2 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) 270774 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 305-495 chr7 8069995 8070202 + 2 NA intron (NM_138426, intron 5 of 7) intron (NM_138426, intron 5 of 7) 101302 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 798-52 chr5 88452401 88453006 + 2 NA Intergenic L2c|LINE|L2 -13613 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 346-269 chr2 186415402 186415583 + 2 NA Intergenic Intergenic -70768 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 400-354 chr8 136282336 136282696 + 2 NA Intergenic Intergenic -248282 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 333-301 chr20 14728687 14728920 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 174419 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 309-55 chr10 74514625 74514856 + 2 NA intron (NR_120673, intron 2 of 4) L1MA5A|LINE|L1 14584 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 275-199 chr2 78788976 78789238 + 2 NA Intergenic Intergenic -236595 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 591-51 chr17 15914284 15914674 + 2 NA Intergenic AluJr|SINE|Alu -30438 NM_000676 136 Hs.167046 NM_000676 ENSG00000170425 ADORA2B ADORA2 adenosine A2b receptor protein-coding 392-15 chr1 221060283 221060659 + 2 NA Intergenic Intergenic -180331 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 157-116 chr7 3390162 3390309 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 88983 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 370-247 chr2 142837497 142837714 + 2 NA Intergenic Intergenic -40059 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 256-362 chr6 72728635 72728829 + 2 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 98237 NR_120503 100507381 Hs.662412 NR_120503 ENSG00000233844 KCNQ5-IT1 - KCNQ5 intronic transcript 1 ncRNA 555-44 chr12 90519538 90519932 + 2 NA Intergenic L2a|LINE|L2 226417 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 320-214 chr17 73115287 73115473 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -22692 NM_139177 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 237-344 chr7 13796066 13796267 + 2 NA Intergenic Intergenic 190348 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 305-546 chr8 121538604 121538809 + 2 NA Intergenic Intergenic -100640 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 525-241 chr7 57295917 57296340 + 2 NA Intergenic L2a|LINE|L2 -73954 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 226-167 chr2 100120054 100120210 + 2 NA intron (NM_002285, intron 1 of 23) L4_B_Mam|LINE|RTE-X -14549 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 567-172 chr7 143909364 143909749 + 2 NA Intergenic Intergenic -7380 NM_001206938 9747 Hs.735149 NM_014719 ENSG00000198420 TCAF1 FAM115A TRPM8 channel associated factor 1 protein-coding 442-125 chr2 33900229 33900551 + 2 NA intron (NR_126403, intron 2 of 5) L1M2|LINE|L1 -166836 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 313-385 chr4 66527158 66527463 + 2 NA Intergenic L1MEc|LINE|L1 250486 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 567-84 chr2 80135967 80136403 + 2 NA intron (NM_001282598, intron 7 of 17) MIRb|SINE|MIR 168567 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 913-38 chr7 61927757 61928277 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1376039 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 500-221 chr5 35786786 35787166 + 2 NA intron (NM_024867, intron 30 of 36) intron (NM_024867, intron 30 of 36) -69915 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 304-342 chr3 83562818 83563087 + 2 NA Intergenic Intergenic 1306623 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 232-266 chr4 59691629 59691757 + 2 NA Intergenic Intergenic 678120 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 464-21 chr10 60992420 60992720 + 2 NA intron (NM_001350902, intron 1 of 11) intron (NM_001350902, intron 1 of 11) 8427 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 338-223 chr18 6000415 6000672 + 2 NA intron (NR_158609, intron 15 of 17) L1M7|LINE|L1 -104589 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 346-164 chr15 94270057 94270333 + 2 NA Intergenic MER20|DNA|hAT-Charlie -28006 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 460-99 chr16 73943366 73943811 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 271933 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 494-317 chr9 93417562 93417818 + 2 NA Intergenic L1M3c|LINE|L1 33918 NR_136235 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 119-41 chr21 28443114 28443184 + 2 NA Intergenic Intergenic -96169 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 394-333 chr8 120039901 120040228 + 2 NA intron (NM_022783, intron 8 of 8) AluSz|SINE|Alu -85038 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 373-84 chr11 132985112 132985327 + 2 NA intron (NM_001012393, intron 1 of 7) MLT1E1A|LTR|ERVL-MaLR -41451 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 587-115 chr4 33712114 33712543 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 327565 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 232-41 chr10 103509399 103509548 + 2 NA intron (NR_120675, intron 2 of 3) Tigger3c|DNA|TcMar-Tigger 7969 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 263-412 chr8 47447080 47447249 + 2 NA intron (NM_001080394, intron 8 of 19) Tigger1|DNA|TcMar-Tigger 186226 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 345-174 chr15 62276852 62277032 + 2 NA Intergenic Intergenic 27792 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 577-42 chr11 44572940 44573425 + 2 NA intron (NM_001024844, intron 1 of 8) LTR79|LTR|ERVL 7519 NM_001024844 3732 Hs.527778 NM_002231 ENSG00000085117 CD82 4F9|C33|GR15|IA4|KAI1|R2|SAR2|ST6|TSPAN27 CD82 molecule protein-coding 209-350 chr9 137636369 137636547 + 2 NA intron (NM_001354612, intron 1 of 8) L1MB7|LINE|L1 17453 NM_001354259 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 190-170 chr7 153803763 153803918 + 2 NA intron (NM_001364500, intron 2 of 26) (AT)n|Simple_repeat|Simple_repeat 55707 NM_001364499 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 575-201 chr8 121335388 121335863 + 2 NA Intergenic Intergenic -303721 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 185-24 chr10 73927523 73927652 + 2 NA Intergenic Intergenic -4810 NR_160937 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 438-68 chr12 127409051 127409360 + 2 NA Intergenic L1MB5|LINE|L1 -69133 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 221-156 chr2 205425038 205425229 + 2 NA intron (NM_205863, intron 19 of 21) intron (NM_205863, intron 19 of 21) -257367 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 539-208 chr8 105366056 105366509 + 2 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 46739 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 364-474 chr9 89158984 89159200 + 2 NA intron (NM_016848, intron 1 of 11) intron (NM_016848, intron 1 of 11) 19726 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 352-170 chr16 35477237 35477426 + 2 NA TTS (NR_026980) TTS (NR_026980) 3265 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 300-291 chr3 123466287 123466466 + 2 NA Intergenic AluSx1|SINE|Alu -17831 NM_183357 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 283-392 chr6 54518364 54518594 + 2 NA Intergenic Intergenic 210038 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 242-116 chr15 68851636 68851824 + 2 NA Intergenic Intergenic -30835 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 713-17 chr11 116599822 116600304 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -39359 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 845-36 chr6 153492052 153492871 + 2 NA Intergenic Intergenic -361179 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 260-359 chr5 141165772 141166022 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -6747 NM_018940 56129 Hs.203830 NM_018940 ENSG00000113212 PCDHB7 PCDH-BETA7 protocadherin beta 7 protein-coding 271-277 chr3 113918105 113918361 + 2 NA intron (NM_001172105, intron 5 of 12) intron (NM_001172105, intron 5 of 12) 20733 NM_001172105 54762 Hs.24583 NM_017577 ENSG00000178075 GRAMD1C - GRAM domain containing 1C protein-coding 264-205 chr2 88425932 88426179 + 2 NA Intergenic L1MEd|LINE|L1 26638 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 361-285 chr3 78230577 78230766 + 2 NA Intergenic MER39|LTR|ERV1 -181708 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 733-30 chr2 16941717 16942315 + 2 NA Intergenic Intergenic -276182 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 311-412 chr5 93993925 93994100 + 2 NA intron (NR_028080, intron 3 of 8) intron (NR_028080, intron 3 of 8) 117651 NM_032042 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 461-214 chr5 66522663 66522980 + 2 NA Intergenic L1MEg|LINE|L1 -11217 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 275-122 chr15 71947933 71948136 + 2 NA intron (NM_006901, intron 15 of 41) MLT1F1|LTR|ERVL-MaLR 137480 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 339-517 chr6 169485761 169485985 + 2 NA intron (NR_146875, intron 19 of 20) L1PREC2|LINE|L1 216156 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 387-272 chr5 25872203 25872554 + 2 NA Intergenic LOR1b|LTR|ERV1 681425 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 218-173 chr2 164048560 164048772 + 2 NA Intergenic Intergenic -312658 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 377-349 chr6 81980089 81980310 + 2 NA intron (NR_149135, intron 3 of 3) L1MC4|LINE|L1 -41778 NR_149134 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 802-37 chr2 196481172 196481730 + 2 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 111532 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 289-374 chr5 89514304 89514534 + 2 NA Intergenic Intergenic 502301 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 479-279 chr9 138054736 138054993 + 2 NA intron (NM_001243812, intron 26 of 45) L1M5|LINE|L1 -9793 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 317-525 chr9 36426814 36427114 + 2 NA Intergenic MIRb|SINE|MIR -25766 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 281-308 chr4 33711602 33711849 + 2 NA Intergenic Intergenic 328168 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 410-233 chr5 27669362 27669701 + 2 NA Intergenic L1MA8|LINE|L1 197239 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 363-226 chr2 135090174 135090408 + 2 NA intron (NM_001172435, intron 3 of 24) intron (NM_001172435, intron 3 of 24) 37999 NM_001172435 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 641-52 chr18 52490850 52491230 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 150843 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 468-248 chr5 46022539 46022946 + 2 NA Intergenic ALR/Alpha|Satellite|centr -326362 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 480-97 chr16 31786065 31786505 + 2 NA Intergenic L1MA3|LINE|L1 22568 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 511-251 chr7 95288408 95288745 + 2 NA exon (NM_001166161, exon 17 of 18) exon (NM_001166161, exon 17 of 18) 35956 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 458-64 chr13 104429796 104430223 + 2 NA Intergenic Intergenic 1004809 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 282-317 chr3 187585653 187585858 + 2 NA Intergenic Intergenic 84639 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 278-94 chr13 89290549 89290725 + 2 NA Intergenic L1MA2|LINE|L1 -53747 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 290-467 chr8 131002310 131002586 + 2 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 38461 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 261-67 chr11 84435813 84436014 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -118574 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 281-350 chr5 17199522 17199760 + 2 NA intron (NR_027253, intron 1 of 2) intron (NR_027253, intron 1 of 2) -17182 NM_001271606 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 216-219 chr3 71472069 71472249 + 2 NA intron (NR_146142, intron 3 of 19) intron (NR_146142, intron 3 of 19) 69930 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 307-203 chr18 52603717 52603915 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 263619 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 368-421 chr7 54269060 54269338 + 2 NA Intergenic Intergenic -61498 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 199-201 chr5 94341139 94341244 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -229492 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 358-146 chr16 54389285 54389635 + 2 NA Intergenic MIR|SINE|MIR -18761 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 325-165 chr14 48030393 48030612 + 2 NA Intergenic L1ME3C|LINE|L1 -235488 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 352-243 chr2 88211072 88211368 + 2 NA Intergenic MER57A1|LTR|ERV1 38081 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 347-232 chr2 99024277 99024528 + 2 NA intron (NM_001349013, intron 13 of 16) L1MB7|LINE|L1 -88177 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 310-446 chr6 46590060 46590320 + 2 NA intron (NM_016593, intron 8 of 11) intron (NM_016593, intron 8 of 11) 62628 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 435-74 chr14 46811829 46812197 + 2 NA Intergenic Intergenic -160232 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 245-247 chr4 30299115 30299266 + 2 NA Intergenic L1ME3E|LINE|L1 -421179 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 408-276 chr5 117161565 117161849 + 2 NA Intergenic Intergenic -253805 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 245-33 chr10 20871453 20871654 + 2 NA intron (NM_006393, intron 5 of 27) intron (NM_006393, intron 5 of 27) 26049 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 474-129 chr2 20408867 20409181 + 2 NA Intergenic L1M2a|LINE|L1 -38050 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 172-4 chr1 116115331 116115418 + 2 NA intron (NM_152367, intron 2 of 6) intron (NM_152367, intron 2 of 6) 3619 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 276-139 chr14 32136496 32136731 + 2 NA intron (NM_001030055, intron 3 of 6) L1MB5|LINE|L1 59309 NM_001173 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 338-359 chr3 183418639 183418922 + 2 NA intron (NM_015078, intron 1 of 29) THE1D-int|LTR|ERVL-MaLR 9489 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 309-375 chr3 193543910 193544113 + 2 NA intron (NM_032279, intron 1 of 29) L1MCc|LINE|L1 -9202 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 602-64 chr2 125341450 125341855 + 2 NA Intergenic L1PA17|LINE|L1 776333 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 333-84 chr11 55158122 55158308 + 2 NA Intergenic ALR/Alpha|Satellite|centr -103940 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 606-6 chr1 105457525 105458081 + 2 NA Intergenic MER110-int|LTR|ERV1 161132 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 211-20 chr1 224963843 224963987 + 2 NA intron (NM_001349911, intron 4 of 10) intron (NM_001349911, intron 4 of 10) 34240 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 790-35 chr4 15438734 15439461 + 2 NA intron (NM_001135171, intron 2 of 2) intron (NM_001135171, intron 2 of 2) 11064 NM_031911 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 673-56 chr2 63370546 63370991 + 2 NA intron (NM_001354045, intron 12 of 12) L1MEd|LINE|L1 67239 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 405-4 chr1 66893157 66893526 + 2 NA exon (NM_207014, exon 3 of 10) exon (NM_207014, exon 3 of 10) 31515 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 291-205 chr2 27145101 27145367 + 2 NA Intergenic L1MB7|LINE|L1 -3770 NM_175769 150921 Hs.591583 NM_175769 ENSG00000163792 TCF23 OUT|TCF-23|bHLHa24 transcription factor 23 protein-coding 446-22 chr1 198316390 198316661 + 2 NA intron (NM_133494, intron 9 of 9) intron (NM_133494, intron 9 of 9) 159527 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 321-246 chr18 34267331 34267497 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -43863 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 348-145 chr14 68128109 68128334 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 304629 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 249-350 chr6 38481710 38481947 + 2 NA intron (NR_144472, intron 1 of 1) intron (NR_144472, intron 1 of 1) 232 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 182-182 chr9 127708526 127708647 + 2 NA intron (NR_145961, intron 1 of 8) intron (NR_145961, intron 1 of 8) 1598 NM_001012502 286207 Hs.652519 NM_001012502 ENSG00000160401 CFAP157 C9orf117 cilia and flagella associated protein 157 protein-coding 163-115 chr7 68267060 68267188 + 2 NA Intergenic Intergenic 246871 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 371-343 chr6 113284420 113284745 + 2 NA Intergenic L1MEc|LINE|L1 148865 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 321-37 chr1 237083901 237084127 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 41830 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 326-444 chr6 27971449 27971660 + 2 NA Intergenic L1MA6|LINE|L1 14313 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 500-197 chr4 31256449 31256757 + 2 NA Intergenic L2a|LINE|L2 85459 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 366-178 chr18 66831769 66832034 + 2 NA Intergenic L1M2|LINE|L1 -227811 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 567-177 chr8 37394077 37394468 + 2 NA Intergenic Intergenic 99641 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 285-142 chr16 12497398 12497629 + 2 NA intron (NM_032167, intron 19 of 20) MLT1K|LTR|ERVL-MaLR -222808 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 493-267 chr7 8362774 8363073 + 2 NA Intergenic Intergenic -70686 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 267-25 chr1 175333311 175333555 + 2 NA intron (NM_003285, intron 20 of 22) intron (NM_003285, intron 20 of 22) -140446 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 301-295 chr3 169729901 169730070 + 2 NA Intergenic L1MA3|LINE|L1 35075 NR_001566 7012 Hs.436182 NR_001566 ENSG00000277925 TERC DKCA1|PFBMFT2|SCARNA19|TR|TRC3|hTR telomerase RNA component ncRNA 214-324 chr8 83983973 83984181 + 2 NA Intergenic L1ME3A|LINE|L1 -198710 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 228-124 chr16 59975175 59975330 + 2 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 119899 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 489-117 chr18 21021825 21022111 + 2 NA intron (NM_005406, intron 11 of 32) intron (NM_005406, intron 11 of 32) 89845 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 224-41 chr10 117905473 117905636 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -141267 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 304-304 chr20 56838726 56838952 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 209533 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 489-91 chr15 68446866 68447201 + 2 NA Intergenic Intergenic -14870 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 580-32 chr11 120728157 120728549 + 2 NA intron (NM_001282470, intron 2 of 19) HAL1M8|LINE|L1 90762 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 398-226 chr3 187478270 187478495 + 2 NA Intergenic Intergenic 31336 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 301-400 chr6 124351104 124351297 + 2 NA intron (NM_001040214, intron 2 of 6) intron (NM_001040214, intron 2 of 6) 68195 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 187-86 chr2 141890367 141890512 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 241262 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 250-113 chr13 111992337 111992489 + 2 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 20103 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 351-257 chr20 15478318 15478520 + 2 NA intron (NM_001351663, intron 7 of 17) intron (NM_001351663, intron 7 of 17) 281579 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 335-76 chr10 119353372 119353573 + 2 NA intron (NM_005308, intron 2 of 15) MamRep434|DNA|TcMar-Tigger -24500 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 250-175 chr18 7615194 7615390 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 47976 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 322-77 chr10 105445252 105445417 + 2 NA Intergenic Intergenic 374999 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 265-268 chr4 62555067 62555310 + 2 NA Intergenic L1PB3|LINE|L1 -393423 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 386-182 chr2 123331704 123331908 + 2 NA Intergenic L1M4|LINE|L1 -258325 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 352-386 chr4 123671796 123672019 + 2 NA intron (NR_027105, intron 3 of 5) intron (NR_027105, intron 3 of 5) 21916 NR_027105 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 219-368 chr8 128310099 128310300 + 2 NA Intergenic Intergenic 160083 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 262-353 chr5 158658129 158658323 + 2 NA Intergenic Intergenic -248453 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 349-532 chrX 149383693 149383935 + 2 NA Intergenic L1MEc|LINE|L1 121492 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 423-62 chr12 93996903 93997282 + 2 NA Intergenic Intergenic -53486 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 525-95 chr17 73548038 73548462 + 2 NA intron (NM_001144952, intron 1 of 44) MIRb|SINE|MIR 34567 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 557-51 chr14 27583223 27583592 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -29181 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 169-145 chr9 19736796 19736932 + 2 NA intron (NM_020344, intron 1 of 9) L1ME3A|LINE|L1 50155 NM_001193288 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 227-388 chr9 25680357 25680513 + 2 NA Intergenic Intergenic -1577 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 423-131 chr2 64689045 64689405 + 2 NA Intergenic Intergenic -35312 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 296-33 chr10 23602007 23602232 + 2 NA Intergenic Intergenic -92608 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 215-212 chr3 197361576 197361727 + 2 NA Intergenic Intergenic -62330 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 426-225 chr5 15561128 15561438 + 2 NA intron (NM_001278317, intron 1 of 3) L1MA9|LINE|L1 53719 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 247-81 chr12 28594292 28594425 + 2 NA Intergenic L1MEi|LINE|L1 -403620 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 269-38 chr10 18814048 18814256 + 2 NA Intergenic L1MC|LINE|L1 154721 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 954-2 chr10 7729219 7729803 + 2 NA intron (NM_002216, intron 11 of 20) L1ME4b|LINE|L1 26195 NM_002216 3698 Hs.75285 NM_002216 ENSG00000151655 ITIH2 H2P|SHAP inter-alpha-trypsin inhibitor heavy chain 2 protein-coding 343-14 chr1 87935328 87935540 + 2 NA Intergenic Intergenic -563779 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 348-372 chr4 99517584 99517915 + 2 NA intron (NM_032149, intron 2 of 8) L2a|LINE|L2 6728 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 334-407 chr5 8202414 8202707 + 2 NA Intergenic Intergenic 255004 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 380-155 chr17 71909988 71910274 + 2 NA Intergenic L2a|LINE|L2 115848 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 457-174 chr4 32367129 32367515 + 2 NA Intergenic Intergenic 16284 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 346-438 chr6 119453546 119453834 + 2 NA non-coding (NR_046100, exon 6 of 6) non-coding (NR_046100, exon 6 of 6) 37612 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 301-247 chr2 238748039 238748300 + 2 NA Intergenic Intergenic 99738 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 853-2 chr10 75922306 75923032 + 2 NA intron (NR_131178, intron 3 of 7) MER117|DNA|hAT-Charlie 139908 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 195-125 chr20 7813030 7813168 + 2 NA Intergenic L1MD|LINE|L1 127359 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 497-206 chr4 126107622 126107948 + 2 NA Intergenic Intergenic 600526 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 201-54 chr11 133486105 133486262 + 2 NA intron (NM_001012393, intron 1 of 7) Tigger17a|DNA|TcMar-Tigger 46318 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 399-182 chr20 31283666 31283897 + 2 NA Intergenic L1M2|LINE|L1 24804 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 296-31 chr10 11094146 11094348 + 2 NA intron (NR_046108, intron 4 of 6) intron (NR_046108, intron 4 of 6) 11241 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 456-260 chr5 131764488 131764925 + 2 NA intron (NM_133372, intron 1 of 17) Charlie23a|DNA|hAT-Charlie 32311 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 341-22 chr1 87615557 87615867 + 2 NA Intergenic Intergenic -244057 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 408-171 chr2 149290413 149290681 + 2 NA Intergenic Intergenic -39438 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 285-120 chr14 59878204 59878400 + 2 NA Intergenic L1MA3|LINE|L1 -7526 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 267-208 chr2 144842406 144842591 + 2 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 174531 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 318-482 chr6 100468802 100469037 + 2 NA Intergenic Intergenic -5244 NM_005068 6492 Hs.520293 NM_005068 ENSG00000112246 SIM1 bHLHe14 SIM bHLH transcription factor 1 protein-coding 372-201 chr18 22448456 22448769 + 2 NA Intergenic Intergenic -30697 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 136-33 chr16 31908586 31908690 + 2 NA intron (NR_049749, intron 4 of 4) L1M1|LINE|L1 34831 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 205-246 chr6 124520007 124520159 + 2 NA intron (NM_001300738, intron 4 of 7) MIR|SINE|MIR 237078 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 215-243 chr5 2633937 2634125 + 2 NA Intergenic Intergenic -78560 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 336-360 chr3 27010894 27011181 + 2 NA Intergenic Intergenic 205486 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 305-527 chr8 50899891 50900179 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 735904 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 410-89 chr14 72656584 72656984 + 2 NA intron (NM_001280542, intron 8 of 10) intron (NM_001280542, intron 8 of 10) 139964 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 781-38 chr20 40268634 40269222 + 2 NA Intergenic Intergenic 264467 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 271-77 chr11 98539920 98540148 + 2 NA Intergenic Intergenic -480915 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 219-73 chr12 65886052 65886220 + 2 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -3811 NR_158984 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 363-380 chr5 164135417 164135666 + 2 NA Intergenic Intergenic 331861 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 346-203 chr17 77517641 77517881 + 2 NA Intergenic L1MA7|LINE|L1 -9240 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 628-122 chr7 70409720 70410170 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) -722199 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 243-418 chr7 53408658 53408845 + 2 NA Intergenic Intergenic 373118 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 116-9 chr11 112489076 112489146 + 2 NA intron (NR_120559, intron 2 of 2) intron (NR_120559, intron 2 of 2) 4766 NR_120560 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 466-181 chr4 24454937 24455289 + 2 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 17792 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 184-119 chr3 196263154 196263292 + 2 NA intron (NM_005017, intron 3 of 9) AluJr4|SINE|Alu 24503 NM_001312673 5130 Hs.135997 NM_005017 ENSG00000161217 PCYT1A CCTA|CT|CTA|CTPCT|PCYT1|SMDCRD phosphate cytidylyltransferase 1, choline, alpha protein-coding 358-129 chr14 90204662 90204903 + 2 NA Intergenic Intergenic -51771 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 436-312 chr8 119591497 119591881 + 2 NA intron (NM_001330600, intron 12 of 25) intron (NM_001330600, intron 12 of 25) 1319 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 395-149 chr19 12248717 12249041 + 2 NA Intergenic Intergenic 45733 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 371-61 chr11 3208194 3208406 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -10032 NR_027138 283303 Hs.151154 NM_173590 ENSG00000236301 MRGPRG-AS1 C11orf36|HSD-40 MRGPRG antisense RNA 1 ncRNA 201-103 chr18 44181559 44181723 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 350056 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 328-577 chr8 122511810 122512074 + 2 NA intron (NR_131202, intron 2 of 3) L1ME3F|LINE|L1 56702 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 326-537 chr8 93381235 93381432 + 2 NA intron (NR_033858, intron 9 of 10) THE1A-int|LTR|ERVL-MaLR -214483 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 505-279 chr7 8139389 8139877 + 2 NA intron (NM_001350836, intron 11 of 14) L1MC1|LINE|L1 122419 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 342-102 chr12 13778307 13778582 + 2 NA intron (NM_000834, intron 2 of 12) MamRep38|DNA|hAT 201912 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 303-437 chr7 126980480 126980767 + 2 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) 77561 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 242-330 chr5 166601018 166601253 + 2 NA Intergenic Intergenic 325235 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 345-434 chr5 114911657 114911886 + 2 NA Intergenic L1MC1|LINE|L1 -138358 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 283-133 chr14 68015011 68015236 + 2 NA intron (NM_133509, intron 7 of 10) MIR|SINE|MIR 191531 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 470-66 chr13 102031641 102031957 + 2 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) 14205 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 357-181 chr2 4749198 4749380 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -93067 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 545-138 chr3 5288009 5288418 + 2 NA Intergenic L1PB|LINE|L1 -37958 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 321-445 chr5 2785967 2786180 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 33942 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 258-280 chr4 30771162 30771338 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 50881 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 523-166 chr22 42040406 42040757 + 2 NA Intergenic L1MA9|LINE|L1 30231 NM_000262 4668 Hs.75372 NM_000262 ENSG00000198951 NAGA D22S674|GALB alpha-N-acetylgalactosaminidase protein-coding 430-275 chr6 161403780 161404067 + 2 NA intron (NM_004562, intron 9 of 11) MSTD|LTR|ERVL-MaLR -67054 NR_134595 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 225-26 chr10 30884808 30884990 + 2 NA intron (NM_001143766, intron 5 of 7) intron (NM_001143766, intron 5 of 7) 114618 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 326-588 chrX 84997629 84997915 + 2 NA Intergenic Intergenic -6105 NM_198450 139322 Hs.512181 NM_198450 ENSG00000155008 APOOL CXorf33|FAM121A|MICOS27|Mic27|UNQ8193 apolipoprotein O like protein-coding 275-114 chr14 71034779 71035022 + 2 NA intron (NM_014982, intron 18 of 35) intron (NM_014982, intron 18 of 35) 127441 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 373-355 chr6 46113752 46114078 + 2 NA intron (NM_001370650, intron 1 of 6) MLT1B|LTR|ERVL-MaLR 15904 NM_001370649 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 167-27 chr11 81776791 81776897 + 2 NA Intergenic L2|LINE|L2 113992 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 362-481 chrX 144790265 144790462 + 2 NA Intergenic L1MA1|LINE|L1 -457140 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 328-100 chr12 17333027 17333308 + 2 NA Intergenic L2b|LINE|L2 255911 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 366-347 chr5 105137847 105138132 + 2 NA Intergenic Intergenic 38515 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 303-474 chr8 131655474 131655635 + 2 NA Intergenic Intergenic -248539 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 213-75 chr12 113113803 113113964 + 2 NA intron (NM_004658, intron 13 of 21) intron (NM_004658, intron 13 of 21) 21716 NM_001301202 8437 Hs.528693 NM_004658 ENSG00000111344 RASAL1 RASAL RAS protein activator like 1 protein-coding 592-35 chr12 58155542 58155944 + 2 NA Intergenic ERVL-int|LTR|ERVL 67851 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 662-44 chr2 80199867 80200441 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 104598 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 536-80 chr15 49734286 49734653 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 113421 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 193-107 chr2 76683417 76683550 + 2 NA Intergenic L1MC|LINE|L1 -302482 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 345-480 chr6 165255426 165255604 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 54090 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 219-267 chr4 178972298 178972478 + 2 NA Intergenic Intergenic -1064452 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 563-184 chr8 102984619 102984978 + 2 NA Intergenic MER57A-int|LTR|ERV1 -36285 NM_001695 528 Hs.86905 NM_001695 ENSG00000155097 ATP6V1C1 ATP6C|ATP6D|VATC|Vma5 ATPase H+ transporting V1 subunit C1 protein-coding 228-223 chr3 132828270 132828472 + 2 NA intron (NR_002811, intron 9 of 10) intron (NR_002811, intron 9 of 10) -105912 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 572-95 chr2 139254749 139255268 + 2 NA Intergenic L1MD1|LINE|L1 357684 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 112-40 chr5 123694574 123694644 + 2 NA Intergenic Intergenic 149192 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 343-304 chr20 49362152 49362409 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 81597 NR_003030 692057 NR_003030 ENSG00000212304 SNORD12 HBII-99|MIR1259|MIRN1259 small nucleolar RNA, C/D box 12 snoRNA 204-238 chr5 109756491 109756691 + 2 NA intron (NM_002372, intron 5 of 21) L1MC4|LINE|L1 67225 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 192-208 chr8 105305497 105305603 + 2 NA Intergenic Intergenic -12888 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 252-302 chr4 97531320 97531500 + 2 NA Intergenic L1MA2|LINE|L1 164484 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 334-254 chr2 40727334 40727592 + 2 NA Intergenic Intergenic -215028 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 572-176 chr8 122015415 122015815 + 2 NA Intergenic Intergenic -374175 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 288-265 chr3 75067695 75067852 + 2 NA Intergenic L1PB1|LINE|L1 -146703 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 597-107 chr5 81577533 81577893 + 2 NA intron (NM_012446, intron 4 of 16) intron (NM_012446, intron 4 of 16) 173540 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 345-194 chr16 72143168 72143431 + 2 NA intron (NM_031293, intron 5 of 20) L1ME3G|LINE|L1 28856 NM_031293 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 323-437 chr5 153688457 153688749 + 2 NA intron (NM_000827, intron 8 of 15) intron (NM_000827, intron 8 of 15) 196431 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 172-77 chr3 40469904 40470052 + 2 NA Intergenic Intergenic -7135 NM_001145083 285267 Hs.407159 NM_173656 ENSG00000177873 ZNF619 - zinc finger protein 619 protein-coding 180-98 chr21 23085448 23085596 + 2 NA Intergenic HAL1|LINE|L1 6238 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 192-130 chr3 24604384 24604530 + 2 NA Intergenic Intergenic -108749 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 525-5 chr1 74619679 74620055 + 2 NA intron (NR_121670, intron 2 of 2) intron (NR_121670, intron 2 of 2) 30132 NR_121670 101927320 Hs.662589 NR_121670 ENSG00000234497 ERICH3-AS1 - ERICH3 antisense RNA 1 ncRNA 262-130 chr14 76685947 76686138 + 2 NA Intergenic Intergenic -75426 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 334-308 chr20 16782531 16782759 + 2 NA Intergenic L1PA15|LINE|L1 34292 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 256-112 chr13 97197968 97198142 + 2 NA Intergenic MLT2B4|LTR|ERVL -18433 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 212-163 chr2 114986079 114986240 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -78414 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 335-443 chr5 150922103 150922343 + 2 NA Intergenic L1MDa|LINE|L1 -17240 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 229-138 chr16 76748216 76748408 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 113314 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 351-359 chr4 146288093 146288384 + 2 NA intron (NR_133924, intron 7 of 9) intron (NR_133924, intron 7 of 9) 73700 NM_001371071 416-253 chr4 91071251 91071579 + 2 NA intron (NM_001145065, intron 9 of 10) L2a|LINE|L2 836384 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 486-55 chr12 14066434 14066742 + 2 NA Intergenic Intergenic -86232 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 204-15 chr1 217376565 217376761 + 2 NA Intergenic HAL1|LINE|L1 -238961 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 445-90 chr16 52740031 52740345 + 2 NA Intergenic L1MA2|LINE|L1 -133213 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 264-404 chr8 36417024 36417163 + 2 NA Intergenic MER90a|LTR|ERV1 -367281 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 358-166 chr18 9990724 9991060 + 2 NA Intergenic Intergenic 76876 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 471-5 chr1 65856700 65857100 + 2 NA intron (NM_002600, intron 1 of 16) L2a|LINE|L2 -56345 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 287-284 chr4 61758062 61758242 + 2 NA intron (NM_001371343, intron 8 of 23) L1PA4|LINE|L1 403613 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 286-455 chr8 89633622 89633820 + 2 NA Intergenic Intergenic 123990 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 289-286 chr22 49558746 49558922 + 2 NA intron (NR_110523, intron 1 of 4) L1MEc|LINE|L1 -15368 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 175-123 chr5 5937920 5938067 + 2 NA Intergenic Intergenic 399299 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 202-168 chr3 84099272 84099381 + 2 NA Intergenic L1MD2|LINE|L1 770249 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 268-113 chr14 45931476 45931708 + 2 NA Intergenic L1MCb|LINE|L1 -132567 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 422-311 chr9 81154325 81154569 + 2 NA Intergenic Intergenic 535088 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 319-134 chr14 39799538 39799733 + 2 NA Intergenic Intergenic -367135 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 239-18 chr1 234115442 234115633 + 2 NA intron (NM_173508, intron 2 of 7) intron (NM_173508, intron 2 of 7) -98674 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 428-19 chr1 214761626 214761947 + 2 NA Intergenic L1PA13|LINE|L1 158591 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 329-328 chr20 29263732 29263916 + 2 NA Intergenic ALR/Alpha|Satellite|centr 153137 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 260-229 chr2 212053883 212054139 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 372349 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 351-214 chr2 57745814 57746002 + 2 NA Intergenic Intergenic -161743 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 426-258 chr6 106033035 106033426 + 2 NA Intergenic AluJr4|SINE|Alu -53106 NM_001198 639 Hs.436023 NM_001198 ENSG00000057657 PRDM1 BLIMP1|PRDI-BF1 PR/SET domain 1 protein-coding 165-40 chr17 59612386 59612498 + 2 NA Intergenic Intergenic -7247 NM_001288653 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 300-167 chr18 61102045 61102221 + 2 NA Intergenic L1PB3|LINE|L1 -231297 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 590-92 chr20 42143883 42144290 + 2 NA intron (NM_133170, intron 18 of 31) LTR16C|LTR|ERVL -525709 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 372-300 chr22 32463702 32463967 + 2 NA Intergenic Intergenic -6448 NM_174932 254240 Hs.372939 NM_174932 ENSG00000184459 BPIFC BPIL2 BPI fold containing family C protein-coding 356-37 chr10 5303987 5304206 + 2 NA Intergenic Intergenic -32860 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 467-27 chr10 43503884 43504215 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 64410 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 355-341 chr3 163008255 163008508 + 2 NA Intergenic Intergenic 294920 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 329-73 chr10 91571353 91571564 + 2 NA intron (NR_024467, intron 1 of 4) L1ME3A|LINE|L1 40002 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 505-256 chr5 160483884 160484228 + 2 NA intron (NR_132748, intron 1 of 1) AluSx|SINE|Alu -1296 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 349-100 chr11 79962441 79962685 + 2 NA Intergenic L2|LINE|L2 -521533 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 493-152 chr2 100022688 100023001 + 2 NA intron (NM_001025108, intron 2 of 23) intron (NM_001025108, intron 2 of 23) 82739 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 592-28 chr11 114801412 114801873 + 2 NA Intergenic L2a|LINE|L2 123115 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 332-402 chr5 12812721 12812939 + 2 NA Intergenic Intergenic 144971 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 409-52 chr12 60266709 60267069 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 577519 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 370-145 chr14 65324029 65324226 + 2 NA Intergenic Intergenic 11056 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 226-174 chr2 115508805 115508973 + 2 NA intron (NM_001321912, intron 5 of 25) AluSc|SINE|Alu 165074 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 377-288 chr4 60039130 60039484 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -883312 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 353-58 chr10 55939722 55940017 + 2 NA Intergenic Intergenic -311927 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 259-329 chr5 143412450 143412659 + 2 NA intron (NM_001018075, intron 1 of 8) intron (NM_001018075, intron 1 of 8) -7199 NM_001364180 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 548-106 chr2 21091369 21091676 + 2 NA Intergenic Intergenic -32464 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 216-241 chr4 11571649 11571810 + 2 NA Intergenic Intergenic -142835 NM_005114 9957 Hs.507348 NM_005114 ENSG00000002587 HS3ST1 3OST|3OST1 heparan sulfate-glucosamine 3-sulfotransferase 1 protein-coding 418-40 chr11 29152992 29153330 + 2 NA Intergenic L1MB7|LINE|L1 -441252 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 268-402 chr8 91712289 91712465 + 2 NA Intergenic L1ME1|LINE|L1 305303 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 320-224 chr18 38622462 38622700 + 2 NA Intergenic Intergenic 965446 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 339-477 chr5 160323411 160323608 + 2 NA intron (NR_131769, intron 1 of 7) L1ME4a|LINE|L1 -10945 NM_024565 79616 Hs.14070 NM_024565 ENSG00000135083 CCNJL - cyclin J like protein-coding 188-143 chr3 197081384 197081537 + 2 NA intron (NM_001366216, intron 15 of 23) intron (NM_001366216, intron 15 of 23) -51643 NM_033316 4241 Hs.184727 NM_005929 ENSG00000163975 MELTF CD228|MAP97|MFI2|MTF1|MTf melanotransferrin protein-coding 305-370 chr4 15170700 15170905 + 2 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) 168321 NM_182485 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 267-231 chr20 56968705 56968913 + 2 NA Intergenic L1ME4a|LINE|L1 -244887 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 330-395 chr4 171518430 171518608 + 2 NA Intergenic Intergenic 120244 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 274-192 chr2 17049131 17049287 + 2 NA Intergenic Intergenic -383375 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 674-94 chr7 33188198 33188694 + 2 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 58882 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 236-361 chr8 115047675 115047860 + 2 NA Intergenic Intergenic 620246 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 561-85 chr19 9526912 9527248 + 2 NA 3' UTR (NM_024106, exon 8 of 8) 3' UTR (NM_024106, exon 8 of 8) 11565 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 195-238 chr8 87147165 87147343 + 2 NA intron (NM_173538, intron 4 of 10) L2a|LINE|L2 280839 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 248-286 chr4 89787873 89788015 + 2 NA intron (NM_001146054, intron 4 of 5) L1MC4|LINE|L1 -48457 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 323-569 chr8 139738757 139738930 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -35720 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 265-153 chr18 38719429 38719580 + 2 NA Intergenic MER33|DNA|hAT-Charlie 902671 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 270-215 chr21 16413979 16414178 + 2 NA intron (NR_136543, intron 3 of 4) L1MD|LINE|L1 -5125 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 219-282 chr5 63779916 63780090 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 182289 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 500-273 chr7 62865065 62865415 + 2 NA Intergenic ALR/Alpha|Satellite|centr 438816 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 519-261 chr9 127893118 127893495 + 2 NA intron (NR_104629, intron 3 of 5) intron (NR_104629, intron 3 of 5) 4102 NM_001287003 30815 Hs.109672 NM_013443 ENSG00000160408 ST6GALNAC6 SIAT7-F|SIAT7F|ST6GALNACVI ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 protein-coding 215-194 chr3 79958455 79958613 + 2 NA Intergenic Intergenic -190536 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 248-107 chr14 31055385 31055593 + 2 NA intron (NM_001254728, intron 1 of 5) MIR|SINE|MIR 28846 NM_001254728 11154 Hs.293411 NM_007077 ENSG00000100478 AP4S1 AP47B|CLA20|CLAPS4|CPSQ6|SPG52 adaptor related protein complex 4 subunit sigma 1 protein-coding 286-185 chr2 5581642 5581835 + 2 NA Intergenic L1ME2|LINE|L1 109380 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 241-424 chr9 36047952 36048123 + 2 NA intron (NM_021111, intron 1 of 20) Charlie15a|DNA|hAT-Charlie 11124 NM_001316347 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 242-364 chr7 29443827 29443985 + 2 NA intron (NM_001293072, intron 6 of 12) intron (NM_001293072, intron 6 of 12) -35806 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 344-247 chr2 104996216 104996501 + 2 NA intron (NR_110603, intron 1 of 2) intron (NR_110603, intron 1 of 2) -41711 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 315-344 chr4 87256238 87256468 + 2 NA Intergenic AluSq2|SINE|Alu -35735 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 261-84 chr12 115203922 115204113 + 2 NA Intergenic Intergenic -519842 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 718-63 chr4 59216248 59216663 + 2 NA Intergenic MLT2B3|LTR|ERVL 202882 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 344-273 chr20 15341409 15341694 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 144711 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 475-208 chr4 69789506 69789822 + 2 NA Intergenic Intergenic -29044 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 318-441 chr5 53287118 53287429 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 177431 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 183-137 chr6 93783331 93783478 + 2 NA Intergenic Intergenic 65101 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 437-24 chr10 58542833 58543155 + 2 NA intron (NM_001080512, intron 1 of 20) L1MB2|LINE|L1 30122 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 317-422 chr6 102196711 102196876 + 2 NA Intergenic (ATTAAT)n|Simple_repeat|Simple_repeat 797808 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 297-515 chr9 102389475 102389718 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -130041 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 331-4 chr1 37172660 37172910 + 2 NA Intergenic Intergenic 11222 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 436-114 chr18 12660059 12660297 + 2 NA intron (NM_147163, intron 1 of 6) intron (NM_147163, intron 1 of 6) 1439 NM_147163 56984 Hs.464652 NM_020232 ENSG00000128789 PSMG2 CLAST3|HCCA3|HsT1707|MDS003|PAC2|TNFSF5IP1 proteasome assembly chaperone 2 protein-coding 296-410 chr6 99957386 99957662 + 2 NA intron (NM_032503, intron 1 of 5) L1MB1|LINE|L1 -36514 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 527-38 chr10 110544800 110545279 + 2 NA Intergenic MIR|SINE|MIR -22652 NM_005445 9126 Hs.24485 NM_005445 ENSG00000108055 SMC3 BAM|BMH|CDLS3|CSPG6|HCAP|SMC3L1 structural maintenance of chromosomes 3 protein-coding 343-430 chr5 68929177 68929392 + 2 NA Intergenic L1ME3Cz|LINE|L1 100643 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 232-249 chr3 106513439 106513608 + 2 NA Intergenic Intergenic -644122 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 291-224 chr2 104969533 104969758 + 2 NA intron (NR_110603, intron 1 of 2) LTR33|LTR|ERVL -68424 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 256-156 chr16 85900868 85901047 + 2 NA intron (NM_002163, intron 1 of 8) intron (NM_002163, intron 1 of 8) 1795 NM_002163 3394 Hs.137427 NM_002163 ENSG00000140968 IRF8 H-ICSBP|ICSBP|ICSBP1|IMD32A|IMD32B|IRF-8 interferon regulatory factor 8 protein-coding 300-264 chr3 7914210 7914436 + 2 NA Intergenic Intergenic 101984 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 275-60 chr11 21677786 21677960 + 2 NA Intergenic L1MA9|LINE|L1 -515212 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 234-273 chr4 64233309 64233464 + 2 NA Intergenic MER50|LTR|ERV1 176064 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 512-6 chr1 40500567 40500935 + 2 NA Intergenic Intergenic -7968 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 232-224 chr21 29483007 29483178 + 2 NA Intergenic Intergenic -12955 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 349-479 chr7 108823408 108823651 + 2 NA Intergenic Intergenic 61058 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 322-410 chr5 10887795 10888075 + 2 NA Intergenic Intergenic -126701 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 254-125 chr15 26898946 26899185 + 2 NA intron (NM_001165037, intron 6 of 10) AluYh3a3|SINE|Alu 31939 NM_001165037 2558 Hs.24969 NM_000810 ENSG00000186297 GABRA5 - gamma-aminobutyric acid type A receptor alpha5 subunit protein-coding 338-206 chr16 81968627 81968810 + 2 NA Intergenic L1MB1|LINE|L1 42752 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 396-383 chrX 84624165 84624397 + 2 NA Intergenic L1PB2|LINE|L1 -121828 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 287-407 chr8 89531935 89532214 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 225637 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 140-74 chr8 27147896 27148006 + 2 NA Intergenic Intergenic -98988 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 275-201 chr2 88375477 88375725 + 2 NA Intergenic AluJo|SINE|Alu 77092 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 401-122 chr16 84022497 84022731 + 2 NA intron (NM_001080442, intron 6 of 9) MIRb|SINE|MIR 19543 NM_001080442 146167 NM_001080442 ENSG00000166558 SLC38A8 FVH2 solute carrier family 38 member 8 protein-coding 585-33 chr13 82542670 82543029 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -1315866 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 202-204 chr5 38334402 38334564 + 2 NA intron (NM_152403, intron 1 of 21) MLT1A0|LTR|ERVL-MaLR -43497 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 355-366 chr4 60864970 60865316 + 2 NA Intergenic Intergenic -57476 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 114-46 chr4 86027180 86027248 + 2 NA intron (NM_001363657, intron 13 of 13) intron (NM_001363657, intron 13 of 13) -92592 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 442-21 chr10 5799230 5799592 + 2 NA intron (NM_001494, intron 2 of 10) AluSx|SINE|Alu 14023 NM_001494 2665 Hs.299055 NM_001494 ENSG00000057608 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 308-76 chr10 129207058 129207289 + 2 NA Intergenic Intergenic -260068 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 380-154 chr17 65494720 65494974 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 37306 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 156-93 chr6 92396830 92396913 + 2 NA Intergenic Intergenic -706443 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 306-323 chr3 111300934 111301186 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner 229244 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 512-96 chr16 56043834 56044205 + 2 NA Intergenic Intergenic -87988 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 214-319 chr8 77002270 77002392 + 2 NA Intergenic Intergenic -1287 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 217-323 chr6 54678897 54679061 + 2 NA Intergenic Intergenic -167792 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 218-153 chr2 71409210 71409365 + 2 NA intron (NM_001252613, intron 20 of 27) intron (NM_001252613, intron 20 of 27) -44274 NM_001130979 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 342-68 chr10 64978419 64978647 + 2 NA Intergenic Intergenic -54015 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 296-48 chr10 64791535 64791756 + 2 NA Intergenic Intergenic -33883 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 463-216 chr4 178626294 178626685 + 2 NA Intergenic L1MCa|LINE|L1 -718553 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 176-99 chr4 119112837 119112963 + 2 NA Intergenic MIR|SINE|MIR -22884 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 365-246 chr22 28152319 28152607 + 2 NA intron (NM_001145418, intron 6 of 22) MIRc|SINE|MIR -231851 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 210-243 chr6 49298446 49298617 + 2 NA Intergenic L2|LINE|L2 164722 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 373-167 chr18 53563264 53563584 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -5023 NR_110798 102724651 Hs.123442 NR_110798 ENSG00000263438 LINC01919 - long intergenic non-protein coding RNA 1919 ncRNA 286-360 chr5 86019575 86019805 + 2 NA Intergenic Intergenic -262754 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 420-311 chr9 99698530 99698759 + 2 NA intron (NR_109802, intron 3 of 6) Tigger1|DNA|TcMar-Tigger 121245 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 426-17 chr1 221392428 221392708 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac -56272 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 517-20 chr1 209473525 209473865 + 2 NA Intergenic MIRc|SINE|MIR 41562 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 448-130 chr2 160573311 160573593 + 2 NA Intergenic L1MD2|LINE|L1 -79645 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 194-10 chr1 108903389 108903519 + 2 NA intron (NM_013296, intron 9 of 14) intron (NM_013296, intron 9 of 14) 26469 NM_013296 29899 Hs.584901 NM_013296 ENSG00000121957 GPSM2 CMCS|DFNB82|LGN|PINS G protein signaling modulator 2 protein-coding 297-431 chr7 40911826 40912085 + 2 NA Intergenic Intergenic 67984 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 200-10 chr1 158146912 158147095 + 2 NA Intergenic MER70B|LTR|ERVL -6363 NR_033946 646268 Hs.506902 NR_033946 ENSG00000231666 LINC01704 - long intergenic non-protein coding RNA 1704 ncRNA 351-454 chr7 62591605 62591932 + 2 NA Intergenic ALR/Alpha|Satellite|centr 712288 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 302-306 chr3 190224631 190224910 + 2 NA Intergenic Intergenic 97676 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 487-152 chr2 138856155 138856587 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -40953 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 324-462 chr6 56019085 56019276 + 2 NA Intergenic Intergenic 72482 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 509-243 chr8 23689509 23689949 + 2 NA Intergenic Intergenic -6791 NM_006167 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 580-92 chr2 179357644 179358197 + 2 NA Intergenic Intergenic -93088 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 289-119 chr12 118704074 118704316 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 57484 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 384-174 chr2 103978172 103978447 + 2 NA Intergenic Intergenic 430023 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 353-339 chr3 121203128 121203403 + 2 NA intron (NM_001348343, intron 9 of 27) intron (NM_001348343, intron 9 of 27) 153625 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 332-200 chr17 64500165 64500441 + 2 NA TTS (NR_039891) TTS (NR_039891) 536 NR_039891 100616387 NR_039891 ENSG00000284564 MIR3064 - microRNA 3064 ncRNA 305-195 chr17 39011067 39011342 + 2 NA Intergenic L1MA3|LINE|L1 15906 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 416-151 chr18 79183139 79183491 + 2 NA intron (NR_148360, intron 8 of 31) intron (NR_148360, intron 8 of 31) 113921 NM_001306085 374868 Hs.465475 NM_198531 ENSG00000166377 ATP9B ATPASEP|ATPIIB|HUSSY-20|NEO1L|hMMR1 ATPase phospholipid transporting 9B (putative) protein-coding 516-265 chr9 24140176 24140533 + 2 NA Intergenic Intergenic -289753 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 199-237 chr8 77002635 77002762 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -1654 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 412-225 chr3 181682650 181683014 + 2 NA intron (NR_075090, intron 2 of 2) L1MA4|LINE|L1 -29093 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 201-159 chr3 107538504 107538636 + 2 NA intron (NM_001276286, intron 2 of 16) intron (NM_001276286, intron 2 of 16) 15608 NM_001142568 56987 Hs.124366 NM_020235 ENSG00000114439 BBX ARTC1|HBP2|HSPC339|MDS001 BBX high mobility group box domain containing protein-coding 509-248 chr8 56512771 56513156 + 2 NA intron (NR_125813, intron 2 of 3) intron (NR_125813, intron 2 of 3) 46860 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 296-479 chr8 115086182 115086398 + 2 NA Intergenic Intergenic 581723 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 512-153 chr21 28316083 28316447 + 2 NA Intergenic Intergenic -87598 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 234-262 chr3 181247205 181247413 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 15572 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 411-247 chr6 3470539 3470860 + 2 NA Intergenic Intergenic -14140 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 358-393 chr5 166939763 166940027 + 2 NA Intergenic (A)n|Simple_repeat|Simple_repeat -13525 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 333-296 chr20 9460128 9460415 + 2 NA intron (NM_000933, intron 31 of 35) intron (NM_000933, intron 31 of 35) -54087 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 322-567 chr9 84633154 84633346 + 2 NA Intergenic Intergenic -35208 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 253-347 chr5 158352113 158352353 + 2 NA intron (NR_109888, intron 4 of 6) intron (NR_109888, intron 4 of 6) 57540 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 403-90 chr14 41362389 41362746 + 2 NA Intergenic Intergenic -244289 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 512-294 chrX 149412131 149412584 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 92949 NM_001166550 3423 Hs.6795 NM_000202 ENSG00000010404 IDS MPS2|SIDS iduronate 2-sulfatase protein-coding 334-476 chr6 141445695 141445973 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 642965 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 244-291 chr5 27936563 27936718 + 2 NA Intergenic LTR16A2|LTR|ERVL 351025 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 280-47 chr10 44816577 44816830 + 2 NA intron (NR_033842, intron 7 of 7) L1MEh|LINE|L1 -94613 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 769-2 chr1 40492297 40492846 + 2 NA intron (NM_001320178, intron 5 of 5) L1ME3Cz|LINE|L1 15281 NM_198494 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 667-34 chr15 92185118 92185643 + 2 NA Intergenic MER3|DNA|hAT-Charlie -208501 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 227-74 chr11 110825358 110825534 + 2 NA Intergenic Intergenic -112257 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 253-6 chr1 68250463 68250661 + 2 NA Intergenic L1ME2z|LINE|L1 -18016 NM_001193334 79971 Hs.647659 NM_024911 ENSG00000116729 WLS C1orf139|EVI|GPR177|MRP|mig-14 Wnt ligand secretion mediator protein-coding 251-145 chr19 29168373 29168546 + 2 NA Intergenic L1ME2|LINE|L1 44692 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 338-342 chr3 78012578 78012848 + 2 NA Intergenic Intergenic 36250 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 319-336 chr3 95640910 95641146 + 2 NA Intergenic Intergenic 42165 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 214-283 chr6 104767194 104767336 + 2 NA intron (NR_146792, intron 20 of 24) L2|LINE|L2 92281 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 556-139 chr22 48244786 48245224 + 2 NA Intergenic Intergenic -29359 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 630-63 chr2 153074188 153074605 + 2 NA Intergenic L1MC5|LINE|L1 355759 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 263-365 chr6 100165543 100165768 + 2 NA Intergenic MIR3|SINE|MIR -171417 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 278-313 chr4 65902674 65902903 + 2 NA Intergenic L1PB3|LINE|L1 -232293 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 481-236 chr5 3928366 3928610 + 2 NA Intergenic L1PA13|LINE|L1 332656 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 470-200 chr4 115340469 115340886 + 2 NA Intergenic L1MC|LINE|L1 -227057 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 178-71 chr2 154861871 154862042 + 2 NA Intergenic Intergenic 163261 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 249-205 chr2 97987531 97987773 + 2 NA intron (NM_015348, intron 1 of 40) intron (NM_015348, intron 1 of 40) 8296 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 250-122 chr14 52150393 52150527 + 2 NA Intergenic L1PA15|LINE|L1 -81401 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 367-366 chr5 100602090 100602427 + 2 NA Intergenic AluSp|SINE|Alu 66884 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 306-555 chrX 39084517 39084703 + 2 NA Intergenic L1MB3|LINE|L1 242752 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 189-31 chr11 94920423 94920549 + 2 NA Intergenic L2c|LINE|L2 53070 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 234-341 chr6 54748122 54748336 + 2 NA Intergenic L1ME3B|LINE|L1 -98542 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 300-451 chr8 50756159 50756388 + 2 NA intron (NR_135797, intron 20 of 20) L1MCa|LINE|L1 592142 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 341-6 chr1 29841813 29842104 + 2 NA Intergenic L1MEd|LINE|L1 195654 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 292-239 chr2 167020369 167020640 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 120451 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 211-209 chr4 80666800 80666984 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) 331172 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 496-64 chr13 39601006 39601495 + 2 NA 5' UTR (NM_005780, exon 2 of 4) 5' UTR (NM_005780, exon 2 of 4) 1943 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 588 chr1 4032102 4032656 + 2 NA Intergenic L2a|LINE|L2 -83399 NR_147024 105376672 Hs.435087 NR_147024 ENSG00000226374 LINC01345 - long intergenic non-protein coding RNA 1345 ncRNA 259-111 chr14 50817508 50817716 + 2 NA intron (NM_016350, intron 3 of 28) intron (NM_016350, intron 3 of 28) -4185 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 305-533 chr8 76219979 76220226 + 2 NA Intergenic Intergenic -186552 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 376-327 chr5 95006271 95006538 + 2 NA intron (NM_001297777, intron 2 of 19) intron (NM_001297777, intron 2 of 19) 75462 NM_001297777 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 809-41 chr5 44008481 44009130 + 2 NA Intergenic AluJb|SINE|Alu -379927 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 479-260 chr8 124083700 124084023 + 2 NA intron (NM_001039112, intron 33 of 40) L1MA3|LINE|L1 -43079 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 333-111 chr12 26353088 26353391 + 2 NA intron (NM_002223, intron 55 of 56) intron (NM_002223, intron 55 of 56) 157666 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 175-132 chr5 80415457 80415569 + 2 NA intron (NR_146172, intron 2 of 20) L1MC3|LINE|L1 7449 NR_146173 9765 Hs.482660 NM_014733 ENSG00000039319 ZFYVE16 PPP1R69 zinc finger FYVE-type containing 16 protein-coding 225-104 chr15 69347715 69347876 + 2 NA intron (NM_001104554, intron 2 of 8) MLT1A0|LTR|ERVL-MaLR 33392 NM_001104554 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 357-162 chr18 6433809 6434060 + 2 NA Intergenic Intergenic -18675 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 531-162 chr3 116378357 116378852 + 2 NA intron (NM_001318915, intron 1 of 8) L2a|LINE|L2 18580 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 240-24 chr1 199548157 199548280 + 2 NA Intergenic LTR16B1|LTR|ERVL 399620 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 301-448 chr8 76598370 76598626 + 2 NA Intergenic Intergenic -82749 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 299-318 chr4 38774688 38774956 + 2 NA exon (NM_030956, exon 4 of 4) exon (NM_030956, exon 4 of 4) 8168 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 115-30 chr4 28574350 28574456 + 2 NA Intergenic Intergenic -245179 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 340-256 chr2 75746515 75746761 + 2 NA Intergenic L2a|LINE|L2 -35723 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 206-293 chrX 74937032 74937182 + 2 NA Intergenic L1MB8|LINE|L1 -11655 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 218-88 chr14 26317598 26317785 + 2 NA Intergenic L1M7|LINE|L1 235739 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 221-307 chr8 125455833 125456012 + 2 NA Intergenic L2c|LINE|L2 23713 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 332-209 chr18 10317116 10317359 + 2 NA Intergenic Intergenic 97133 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 374-384 chr8 71186455 71186738 + 2 NA Intergenic L1ME3G|LINE|L1 170110 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 321-133 chr12 47380945 47381114 + 2 NA Intergenic Intergenic -16760 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 401-218 chr3 163312255 163312495 + 2 NA Intergenic Intergenic -9074 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 537-187 chr5 16149920 16150284 + 2 NA intron (NM_001102562, intron 2 of 3) L1ME3|LINE|L1 29689 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 261-188 chr2 106231232 106231423 + 2 NA Intergenic L1MB4|LINE|L1 -36988 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 505-129 chr19 57006257 57006599 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -113713 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 524-193 chr5 20322413 20322771 + 2 NA intron (NR_146519, intron 1 of 1) MIRb|SINE|MIR 17041 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 608-57 chr18 4377300 4377659 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 77787 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 226-131 chr17 79525433 79525651 + 2 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) -9394 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 358-86 chr12 12024803 12025116 + 2 NA Intergenic Intergenic -24902 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 216-272 chr5 26559377 26559553 + 2 NA Intergenic Intergenic 479121 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 234-403 chr9 91092745 91092928 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -17704 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 330-229 chr18 60782262 60782432 + 2 NA Intergenic Intergenic -409572 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 411-107 chr16 9039876 9040123 + 2 NA Intergenic L2c|LINE|L2 -51645 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 334-156 chr14 76021235 76021443 + 2 NA intron (NM_001102564, intron 2 of 8) intron (NM_001102564, intron 2 of 8) 35576 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 541-9 chr1 199523926 199524463 + 2 NA Intergenic Intergenic 375596 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 270-175 chr2 18149737 18149915 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 271159 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 497-103 chr18 56428206 56428658 + 2 NA Intergenic L1PA14|LINE|L1 210160 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 298-333 chr4 84941113 84941349 + 2 NA intron (NM_014991, intron 1 of 67) L1M5|LINE|L1 -24385 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 281-34 chr10 24775640 24775830 + 2 NA Intergenic Intergenic -51848 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 463-163 chr20 16669042 16669332 + 2 NA Intergenic Intergenic -60839 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 295-402 chr6 47386339 47386579 + 2 NA Intergenic L1MA3|LINE|L1 -76554 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 436-269 chr6 78004217 78004588 + 2 NA Intergenic MIR|SINE|MIR 351363 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 317-138 chr14 33908490 33908708 + 2 NA Intergenic LTR41C|LTR|ERVL 42475 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 260-253 chr22 34893166 34893322 + 2 NA intron (NR_138042, intron 3 of 4) L4_A_Mam|LINE|RTE-X 104672 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 720-79 chr6 125660265 125660742 + 2 NA Intergenic Intergenic -13850 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 652-129 chr9 83159833 83160303 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -96926 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 331-55 chr10 67431945 67432154 + 2 NA intron (NM_001127384, intron 5 of 17) L1M5|LINE|L1 -28639 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 257-316 chr5 22772144 22772313 + 2 NA intron (NM_004061, intron 1 of 14) L2a|LINE|L2 81116 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 515-33 chr11 15134171 15134574 + 2 NA intron (NM_001042536, intron 1 of 12) intron (NM_001042536, intron 1 of 12) -14730 NM_001278314 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 182-9 chr1 91552388 91552541 + 2 NA Intergenic Intergenic 51356 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 186-60 chr17 5974751 5974910 + 2 NA Intergenic Intergenic -95784 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 378-56 chr10 44685430 44685695 + 2 NA Intergenic Intergenic -225754 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 798-2 chr1 152984647 152985124 + 2 NA intron (NM_005987, intron 1 of 1) intron (NM_005987, intron 1 of 1) 804 NM_005987 6698 Hs.46320 NM_005987 ENSG00000169474 SPRR1A SPRK small proline rich protein 1A protein-coding 482-17 chr1 165574698 165575019 + 2 NA intron (NR_026744, intron 2 of 6) intron (NR_026744, intron 2 of 6) 7297 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LRRC52-AS1 - LRRC52 antisense RNA 1 ncRNA 424-224 chr5 88492929 88493235 + 2 NA Intergenic Intergenic -53992 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 592-46 chr14 48047476 48047915 + 2 NA Intergenic Intergenic -252681 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 333-603 chr9 37359719 37359974 + 2 NA Intergenic L1M5|LINE|L1 -62850 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 243-88 chr12 28284069 28284268 + 2 NA intron (NM_001352082, intron 4 of 13) intron (NM_001352082, intron 4 of 13) -93430 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 496-243 chr6 138099396 138099790 + 2 NA intron (NM_022121, intron 1 of 2) intron (NM_022121, intron 1 of 2) 7826 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 604-157 chr7 159254045 159254595 + 2 NA Intergenic Intergenic -109363 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 385-95 chr14 41217384 41217654 + 2 NA Intergenic Intergenic 262808 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 227-11 chr1 92313604 92313766 + 2 NA intron (NM_024813, intron 6 of 12) Tigger1|DNA|TcMar-Tigger 14626 NM_024813 79871 Hs.444421 NM_024813 ENSG00000122484 RPAP2 C1orf82|Rtr1 RNA polymerase II associated protein 2 protein-coding 176-110 chr5 106433201 106433330 + 2 NA Intergenic Intergenic 577749 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 324-269 chr2 103748134 103748366 + 2 NA Intergenic Intergenic 660082 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 389-331 chr6 156304745 156304980 + 2 NA Intergenic Intergenic -73888 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 392-38 chr11 36991903 36992177 + 2 NA Intergenic MIR|SINE|MIR -393761 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 527-80 chr14 40405423 40405852 + 2 NA Intergenic Intergenic -549074 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 305-292 chr2 201454871 201455148 + 2 NA intron (NM_018571, intron 2 of 11) intron (NM_018571, intron 2 of 11) 3269 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 158-22 chr11 85786835 85786950 + 2 NA intron (NM_001365826, intron 1 of 18) L2a|LINE|L2 24249 NM_001365827 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 468-213 chr3 190282794 190283182 + 2 NA Intergenic LTR79|LTR|ERVL 39458 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 415-228 chr5 163218765 163219049 + 2 NA Intergenic AluSz|SINE|Alu -218664 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 245-316 chr7 8350116 8350305 + 2 NA Intergenic Intergenic -83399 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 209-276 chr6 102017976 102018138 + 2 NA intron (NM_001166247, intron 13 of 16) L1MC1|LINE|L1 619072 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 179-85 chr4 70786290 70786386 + 2 NA intron (NM_001130709, intron 10 of 11) L1MA6|LINE|L1 51928 NM_001291993 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 477-94 chr14 72563525 72563872 + 2 NA non-coding (NR_135235, exon 19 of 19) non-coding (NR_135235, exon 19 of 19) 46878 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 313-514 chr8 15248305 15248481 + 2 NA Intergenic Intergenic -9962 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 294-132 chr15 25529408 25529691 + 2 NA Intergenic L1MC4|LINE|L1 -90493 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 380-371 chr7 85784421 85784758 + 2 NA Intergenic L1MA8|LINE|L1 363467 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 337-504 chr6 132317201 132317378 + 2 NA intron (NM_015529, intron 9 of 11) intron (NM_015529, intron 9 of 11) 84186 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 432-177 chr3 80480939 80481256 + 2 NA Intergenic L1PA5|LINE|L1 -283800 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 478-107 chr16 63502953 63503262 + 2 NA Intergenic Intergenic -1466669 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 424-218 chr5 38003717 38004115 + 2 NA Intergenic Intergenic -21781 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 292-388 chr6 160219817 160220000 + 2 NA intron (NM_003058, intron 10 of 10) Tigger1|DNA|TcMar-Tigger 38913 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 495-256 chr8 103583881 103584280 + 2 NA intron (NM_001348497, intron 1 of 22) L1MA1|LINE|L1 -82170 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 532-230 chr6 122855875 122856307 + 2 NA Intergenic Intergenic 66833 NM_006714 10924 Hs.486357 NM_006714 ENSG00000172594 SMPDL3A ASM3A|ASML3a|yR36GH4.1 sphingomyelin phosphodiesterase acid like 3A protein-coding 481-68 chr12 20222005 20222386 + 2 NA Intergenic L1MA4|LINE|L1 -94294 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 560-34 chr12 34573322 34573785 + 2 NA Intergenic ALR/Alpha|Satellite|centr 551057 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 447-287 chr9 25092694 25092988 + 2 NA Intergenic L1ME3G|LINE|L1 -546944 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 295-50 chr10 81535177 81535466 + 2 NA Intergenic Intergenic -339873 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 568-177 chr6 156663506 156664018 + 2 NA Intergenic L1P2|LINE|L1 -114093 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 216-85 chr13 67307423 67307564 + 2 NA Intergenic Intergenic -64894 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 513-14 chr1 188844215 188844636 + 2 NA Intergenic Intergenic 1400797 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 388-376 chrX 70773111 70773412 + 2 NA intron (NM_001003811, intron 10 of 30) L1MA4A|LINE|L1 73034 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 550-232 chr8 115210896 115211358 + 2 NA Intergenic Intergenic 456886 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 247-43 chr10 78593763 78593958 + 2 NA Intergenic MLT2B2|LTR|ERVL 326518 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 434-104 chr16 82908934 82909249 + 2 NA intron (NM_001220490, intron 2 of 12) MER2|DNA|TcMar-Tigger 81207 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 236-57 chr10 126173462 126173620 + 2 NA intron (NM_001288974, intron 3 of 18) MER20|DNA|hAT-Charlie -200268 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 294-266 chr20 62080674 62080913 + 2 NA Intergenic Intergenic -14983 NM_003185 6874 Hs.18857 NM_003185 ENSG00000130699 TAF4 TAF2C|TAF2C1|TAF4A|TAFII130|TAFII135 TATA-box binding protein associated factor 4 protein-coding 330-265 chr2 67080588 67080870 + 2 NA Intergenic Intergenic -5717 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 802-36 chr2 183074146 183074684 + 2 NA Intergenic Intergenic -4332 NR_135688 142679 Hs.132237 NM_080876 ENSG00000162999 DUSP19 DUSP17|LMWDSP3|SKRP1|TS-DSP1 dual specificity phosphatase 19 protein-coding 434-54 chr11 114906764 114907095 + 2 NA Intergenic Intergenic 228402 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 366-172 chr18 6010853 6011047 + 2 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -114996 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 233-188 chr2 163773220 163773435 + 2 NA Intergenic Tigger16b|DNA|TcMar-Tigger -37319 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 342-182 chr16 68567483 68567783 + 2 NA TTS (NR_130978) TTS (NR_130978) 28342 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 363-95 chr12 15325458 15325775 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 3108 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 393-367 chr8 127625011 127625384 + 2 NA Intergenic Intergenic 108770 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 392-158 chr2 141839529 141839736 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 292069 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 468-76 chr14 33107706 33108048 + 2 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 168998 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 303-216 chr2 114812690 114812931 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 20738 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 657-71 chr4 56167598 56168113 + 2 NA Intergenic L1MB1|LINE|L1 -2340 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 297-103 chr12 25572398 25572622 + 2 NA intron (NM_001352234, intron 1 of 8) intron (NM_001352234, intron 1 of 8) -19227 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 297-468 chr8 82304826 82305099 + 2 NA Intergenic Intergenic -462676 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 525-193 chr5 25304801 25305156 + 2 NA Intergenic AluSx|SINE|Alu 114025 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 532-66 chr14 45620537 45620900 + 2 NA Intergenic Intergenic 94884 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 152-42 chr19 30099635 30099752 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 157454 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 479-225 chr7 8130990 8131314 + 2 NA intron (NM_001350836, intron 13 of 14) MLT1K|LTR|ERVL-MaLR 130900 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 340-485 chr6 140000806 140001001 + 2 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -9642 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 274-286 chr4 73040484 73040685 + 2 NA Intergenic L1M2|LINE|L1 29132 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 413-96 chr15 33594686 33594923 + 2 NA intron (NM_001243996, intron 16 of 102) MER4-int|LTR|ERV1 283837 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 385-271 chr4 75762438 75762684 + 2 NA intron (NM_001290049, intron 5 of 25) intron (NM_001290049, intron 5 of 25) 38039 NM_001290049 8615 Hs.744877 NM_003715 ENSG00000138768 USO1 P115|TAP|VDP USO1 vesicle transport factor protein-coding 508-191 chr5 109881899 109882217 + 2 NA Intergenic LTR81A|LTR|Gypsy -1124 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 256-318 chr5 45965086 45965255 + 2 NA Intergenic ALR/Alpha|Satellite|centr -268790 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 335-228 chr2 11039772 11039951 + 2 NA Intergenic Intergenic 92315 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 477-73 chr12 16828339 16828734 + 2 NA Intergenic Intergenic -160211 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 209-234 chr4 119973567 119973739 + 2 NA Intergenic L1MA8|LINE|L1 34113 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 776-16 chr14 79994734 79995233 + 2 NA Intergenic Intergenic -216436 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 268-169 chr19 37502978 37503150 + 2 NA intron (NR_110723, intron 2 of 2) intron (NR_110723, intron 2 of 2) -3875 NM_001013659 390927 Hs.568010 NM_001013659 ENSG00000188227 ZNF793 - zinc finger protein 793 protein-coding 326-262 chr2 132480374 132480620 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 46786 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 308-227 chr2 60229874 60230074 + 2 NA Intergenic MIR|SINE|MIR 153062 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 615-105 chr5 15039170 15039579 + 2 NA Intergenic L1MEd|LINE|L1 -167596 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 168-59 chr2 103940754 103940884 + 2 NA Intergenic Intergenic 467513 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 432-188 chr3 148335213 148335643 + 2 NA intron (NR_146712, intron 3 of 4) intron (NR_146712, intron 3 of 4) 54537 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 271-353 chr5 95612446 95612650 + 2 NA Intergenic L1ME4a|LINE|L1 -7539 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 285 chr1 30154591 30154795 + 2 NA Intergenic Intergenic -117081 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 318-45 chr1 238574116 238574366 + 2 NA Intergenic L1MDa|LINE|L1 -88224 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 314-173 chr14 64196182 64196444 + 2 NA intron (NM_015180, intron 99 of 114) intron (NM_015180, intron 99 of 114) -17831 NM_182913 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 235-390 chr9 72310677 72310853 + 2 NA intron (NR_110952, intron 1 of 4) intron (NR_110952, intron 1 of 4) 5329 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 211-73 chr13 49278348 49278514 + 2 NA exon (NM_001193478, exon 7 of 10) exon (NM_001193478, exon 7 of 10) 30506 NM_001193478 81602 Hs.388220 NM_030911 ENSG00000102543 CDADC1 NYD-SP15|bA103J18.1 cytidine and dCMP deaminase domain containing 1 protein-coding 495-105 chr2 34370224 34370646 + 2 NA Intergenic Intergenic 303209 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 304-174 chr16 25969194 25969383 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -55949 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 278-407 chr8 28044783 28044971 + 2 NA intron (NM_001010906, intron 12 of 18) intron (NM_001010906, intron 12 of 18) 39059 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 304-253 chr2 60473700 60473975 + 2 NA intron (NM_138559, intron 2 of 4) intron (NM_138559, intron 2 of 4) 79661 NM_001365609 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 293-63 chr11 76758754 76758971 + 2 NA Intergenic Intergenic -23451 NM_001258210 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 217-5 chr1 40125931 40126108 + 2 NA Intergenic Intergenic -28549 NM_000310 5538 Hs.3873 NM_000310 ENSG00000131238 PPT1 CLN1|INCL|PPT palmitoyl-protein thioesterase 1 protein-coding 364-129 chr14 66712864 66713214 + 2 NA intron (NM_001024218, intron 2 of 21) L1PBa|LINE|L1 205632 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 344-350 chr4 41724650 41724847 + 2 NA Intergenic Intergenic 24222 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 233-357 chr7 72314225 72314398 + 2 NA intron (NM_001363460, intron 1 of 5) HAL1|LINE|L1 23080 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 336-573 chr9 778131 778393 + 2 NA Intergenic L1MA6|LINE|L1 -63435 NM_021951 1761 Hs.98586 NM_021951 ENSG00000137090 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 177-88 chr2 220858113 220858215 + 2 NA Intergenic Intergenic 714140 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 239-421 chr8 129748578 129748777 + 2 NA exon (NM_031415, exon 14 of 14) exon (NM_031415, exon 14 of 14) 37947 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 329-142 chr13 66759160 66759480 + 2 NA intron (NM_020403, intron 2 of 3) L1M1|LINE|L1 -65849 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 437-300 chrX 40407801 40408142 + 2 NA Intergenic MIRb|SINE|MIR 145054 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 508-53 chr12 119483137 119483616 + 2 NA intron (NM_178499, intron 4 of 13) intron (NM_178499, intron 4 of 13) -110398 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 437-237 chr6 19293982 19294325 + 2 NA Intergenic Intergenic -113673 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 484-291 chrX 85356489 85356807 + 2 NA intron (NM_001307940, intron 4 of 15) intron (NM_001307940, intron 4 of 15) 23017 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 342-508 chr8 49660313 49660611 + 2 NA Intergenic L1PA13|LINE|L1 -148282 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 353-139 chr14 59651722 59651951 + 2 NA intron (NM_021136, intron 3 of 8) L1PREC2|LINE|L1 -4816 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 555-149 chr4 86649202 86649583 + 2 NA intron (NM_080685, intron 2 of 47) L1MA4|LINE|L1 55077 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 581-55 chr17 34089148 34089630 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 67417 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 278-390 chr7 35433670 35433877 + 2 NA Intergenic L1PA16|LINE|L1 119918 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 519-6 chr1 68997214 68997553 + 2 NA Intergenic L1PA3|LINE|L1 -58515 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 265-23 chr1 208471188 208471423 + 2 NA Intergenic MIRb|SINE|MIR -226921 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 294-348 chr4 126006585 126006772 + 2 NA Intergenic L2a|LINE|L2 499419 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 239-131 chr17 67542143 67542333 + 2 NA intron (NM_181671, intron 2 of 9) intron (NM_181671, intron 2 of 9) -70653 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 366-479 chrX 39535605 39535923 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -125452 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 347-542 chr9 30105953 30106197 + 2 NA Intergenic Intergenic 302379 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 305-487 chr6 148646500 148646711 + 2 NA Intergenic L1ME1|LINE|L1 -100425 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 394-82 chr12 44492331 44492555 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 383218 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 270-158 chr17 71848739 71848947 + 2 NA Intergenic Intergenic 177136 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 173-17 chr11 41996389 41996533 + 2 NA Intergenic Intergenic 88997 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 121-53 chr5 99749743 99749824 + 2 NA Intergenic Intergenic 215793 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 374-359 chr7 46150785 46151048 + 2 NA Intergenic Intergenic -229644 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 283-55 chr10 63373373 63373625 + 2 NA promoter-TSS (NR_031566) promoter-TSS (NR_031566) -451 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 821-48 chr5 84731157 84731607 + 2 NA Intergenic L1MB2|LINE|L1 -346502 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 509-3 chr1 49612016 49612348 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -140097 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 265-337 chr6 76309855 76310081 + 2 NA Intergenic L1M5|LINE|L1 -237290 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 205-85 chr14 60012009 60012189 + 2 NA intron (NR_075071, intron 23 of 32) intron (NR_075071, intron 23 of 32) -79812 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 356-33 chr1 231885631 231885958 + 2 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) -40040 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 307-320 chr3 173105937 173106241 + 2 NA intron (NM_031955, intron 2 of 10) intron (NM_031955, intron 2 of 10) 35146 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 487-308 chr9 35576628 35577095 + 2 NA Intergenic MER66-int|LTR|ERV1 -12983 NM_001287238 730112 Hs.98959 NM_001099951 ENSG00000215187 FAM166B - family with sequence similarity 166 member B protein-coding 470-110 chr19 30623249 30623558 + 2 NA intron (NM_001352260, intron 4 of 5) L2a|LINE|L2 251019 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 376-225 chr20 62438573 62438824 + 2 NA Intergenic Intergenic -11159 NM_080833 140893 Hs.180374 NM_080833 ENSG00000130701 RBBP8NL C20orf151 RBBP8 N-terminal like protein-coding 570-36 chr11 6847088 6847432 + 2 NA TTS (NM_178168) TTS (NM_178168) 1577 NM_178168 144124 Hs.447478 NM_178168 ENSG00000166363 OR10A5 JCG6|OR10A1|OR11-403 olfactory receptor family 10 subfamily A member 5 protein-coding 190-34 chr12 31493813 31493944 + 2 NA intron (NM_144973, intron 2 of 20) intron (NM_144973, intron 2 of 20) -96045 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 487-197 chr3 171403054 171403423 + 2 NA intron (NM_001161563, intron 1 of 31) HAL1|LINE|L1 57167 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 293-352 chr5 123749014 123749229 + 2 NA Intergenic Intergenic 203704 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 557-210 chr8 136281066 136281442 + 2 NA Intergenic Intergenic -249544 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 425-109 chr17 26785650 26785907 + 2 NA Intergenic Intergenic 303463 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 397-290 chr6 160577456 160577680 + 2 NA intron (NM_005577, intron 27 of 38) L1MCc|LINE|L1 -66444 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 231-249 chr4 41479486 41479697 + 2 NA intron (NM_001289122, intron 1 of 25) L1MC5a|LINE|L1 -58566 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 528-214 chr5 155748063 155748567 + 2 NA Intergenic L2|LINE|L2 -578442 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 284-158 chr17 52021266 52021513 + 2 NA intron (NM_001082533, intron 3 of 9) L1P4|LINE|L1 137325 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 171-26 chr12 64355646 64355746 + 2 NA intron (NM_001099676, intron 1 of 10) LTR37-int|LTR|ERV1 35062 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 290-252 chr21 14073240 14073436 + 2 NA Intergenic GSATX|Satellite|centr -92894 NR_027270 391267 Hs.364456 NM_153750 ENSG00000215559 ANKRD20A11P C21orf81 ankyrin repeat domain 20 family member A11, pseudogene pseudo 320-104 chr11 116589313 116589620 + 2 NA Intergenic Intergenic -49956 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 203-254 chr9 106495460 106495592 + 2 NA Intergenic L1MEi|LINE|L1 -105402 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 313-121 chr13 53951885 53952069 + 2 NA Intergenic Intergenic 136558 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 298-88 chr12 11719466 11719648 + 2 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 69703 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 275-86 chr12 60034769 60034952 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 345490 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 249-263 chr3 78855001 78855162 + 2 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 164378 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 487-192 chr3 127828964 127829357 + 2 NA Intergenic L1MD2|LINE|L1 -5910 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 236-139 chr17 13603404 13603571 + 2 NA Intergenic Intergenic -1558 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 791-33 chr19 27559725 27560394 + 2 NA Intergenic ALR/Alpha|Satellite|centr -233372 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 518-312 chr9 75143734 75144234 + 2 NA intron (NM_012383, intron 9 of 9) intron (NM_012383, intron 9 of 9) 55470 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 152-9 chr10 31351824 31351951 + 2 NA intron (NM_001323675, intron 1 of 6) intron (NM_001323675, intron 1 of 6) 30227 NM_001323675 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 265-266 chr4 59417031 59417260 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 403572 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 151-91 chr9 24896783 24896890 + 2 NA Intergenic Intergenic -350939 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 665-4 chr1 163570650 163571113 + 2 NA Intergenic L2a|LINE|L2 -147690 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 480-188 chr3 74289644 74290085 + 2 NA intron (NM_020872, intron 18 of 21) L2a|LINE|L2 231276 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 502-77 chr13 73685320 73685743 + 2 NA TTS (NM_007249) TTS (NM_007249) 121287 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 318-158 chr13 54314601 54314903 + 2 NA Intergenic Intergenic -2704 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 547 chr1 5040546 5040920 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 386124 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 251-82 chr13 108517109 108517299 + 2 NA Intergenic AluJr|SINE|Alu -78701 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 503-204 chr3 137490423 137490795 + 2 NA Intergenic Intergenic -273706 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 222-217 chr21 19092692 19092867 + 2 NA Intergenic Intergenic -332967 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 335-388 chr4 84139402 84139597 + 2 NA intron (NR_125909, intron 7 of 8) L1MD3|LINE|L1 159670 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 268-86 chr12 43559775 43559946 + 2 NA Intergenic L1PB1|LINE|L1 -7657 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 352-291 chr20 59312376 59312586 + 2 NA intron (NM_207032, intron 2 of 4) intron (NM_207032, intron 2 of 4) 11870 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 603-125 chr4 90776230 90776636 + 2 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 541402 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 330-124 chr12 42801995 42802237 + 2 NA Intergenic Intergenic 109900 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 331-213 chr18 5856457 5856644 + 2 NA Intergenic L1ME3F|LINE|L1 15855 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 270-77 chr12 23996560 23996747 + 2 NA intron (NM_152989, intron 4 of 17) L1MB5|LINE|L1 -45621 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 404-230 chr4 53384935 53385274 + 2 NA intron (NM_001134938, intron 4 of 14) intron (NM_001134938, intron 4 of 14) 7451 NM_001134938 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 602-82 chr22 47957243 47957603 + 2 NA Intergenic L1MD3|LINE|L1 -316941 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 169-94 chr5 20418278 20418423 + 2 NA intron (NM_001349558, intron 1 of 15) AluSx1|SINE|Alu 112799 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 219-10 chr1 90227403 90227549 + 2 NA Intergenic L1MEf|LINE|L1 232366 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 554-174 chr5 74102380 74102838 + 2 NA Intergenic Intergenic 205716 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 323-532 chr8 43779655 43779853 + 2 NA Intergenic ALR/Alpha|Satellite|centr 487312 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 171-112 chr6 55522682 55522807 + 2 NA intron (NM_001287746, intron 4 of 9) intron (NM_001287746, intron 4 of 9) 56470 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 399-129 chr19 51863029 51863324 + 2 NA intron (NM_001370455, intron 5 of 6) intron (NM_001370455, intron 5 of 6) 24760 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 384-81 chr12 59802600 59802945 + 2 NA Intergenic L1MC2|LINE|L1 113402 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 300-115 chr14 71093075 71093346 + 2 NA intron (NM_014982, intron 30 of 35) Tigger2|DNA|TcMar-Tigger 185751 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 517-161 chr20 48008976 48009416 + 2 NA Intergenic Intergenic -19079 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 505-303 chr8 70296178 70296521 + 2 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 107041 NM_001321707 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 257-206 chr2 129260665 129260858 + 2 NA intron (NR_122042, intron 1 of 3) L1ME4a|LINE|L1 13130 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 250-261 chr22 27289405 27289573 + 2 NA Intergenic Intergenic -21162 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 335-553 chr8 137332733 137332942 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 80751 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 317-205 chr19 12268800 12269071 + 2 NA Intergenic AluJb|SINE|Alu 25677 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 312-526 chr8 106982425 106982650 + 2 NA Intergenic Intergenic -212293 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 384-84 chr12 69141020 69141393 + 2 NA Intergenic MER4B-int|LTR|ERV1 -98363 NM_007007 11052 Hs.369606 NM_007007 ENSG00000111605 CPSF6 CFIM|CFIM68|CFIM72|HPBRII-4|HPBRII-7 cleavage and polyadenylation specific factor 6 protein-coding 443-218 chr4 41184096 41184391 + 2 NA intron (NM_173075, intron 1 of 16) MER1A|DNA|hAT-Charlie 30299 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 316-134 chr12 48721343 48721623 + 2 NA Intergenic Intergenic -4776 NM_001277842 904 Hs.92308 NM_001240 ENSG00000129315 CCNT1 CCNT|CYCT1|HIVE1 cyclin T1 protein-coding 363-193 chr19 30600328 30600622 + 2 NA intron (NM_001352260, intron 4 of 5) intron (NM_001352260, intron 4 of 5) 228091 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 157-15 chr10 8611267 8611407 + 2 NA Intergenic L1ME3B|LINE|L1 -16946 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 293-206 chr2 143054896 143055132 + 2 NA 3' UTR (NM_003937, exon 14 of 14) 3' UTR (NM_003937, exon 14 of 14) -74405 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 219-9 chr1 80602033 80602241 + 2 NA intron (NR_125940, intron 2 of 3) MSTB|LTR|ERVL-MaLR -39150 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 783-61 chr5 82040844 82041248 + 2 NA intron (NM_031482, intron 2 of 7) L2a|LINE|L2 69023 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 527-151 chr2 224023667 224023940 + 2 NA intron (NM_006216, intron 1 of 8) intron (NM_006216, intron 1 of 8) 7675 NR_073116 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 434-9 chr1 79202991 79203372 + 2 NA Intergenic Intergenic -196451 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 427-167 chr3 155924343 155924622 + 2 NA intron (NM_003875, intron 11 of 15) L1MEd|LINE|L1 53832 NM_003875 8833 Hs.591314 NM_003875 ENSG00000163655 GMPS GATD7 guanine monophosphate synthase protein-coding 382-27 chr1 248261574 248261834 + 2 NA Intergenic L1PA13|LINE|L1 12110 NM_001004695 391195 Hs.553783 NM_001004695 ENSG00000177212 OR2T33 OR1-56|OR2T32 olfactory receptor family 2 subfamily T member 33 protein-coding 465-107 chr17 72681573 72682019 + 2 NA intron (NM_001352692, intron 7 of 9) Tigger2a|DNA|TcMar-Tigger -41324 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 405-38 chr10 94884084 94884345 + 2 NA Intergenic L1PB4|LINE|L1 -54444 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 504-154 chr21 25223733 25224193 + 2 NA Intergenic Intergenic 207738 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 471-212 chr5 97894239 97894609 + 2 NA intron (NR_146299, intron 2 of 2) intron (NR_146299, intron 2 of 2) 53666 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 212-127 chr18 11169165 11169331 + 2 NA Intergenic L1MB7|LINE|L1 -20486 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 444-236 chr7 28545472 28545806 + 2 NA intron (NM_182899, intron 3 of 9) intron (NM_182899, intron 3 of 9) 110024 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 378-59 chr10 60268355 60268564 + 2 NA intron (NM_001204403, intron 6 of 43) L1MC|LINE|L1 121416 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 504-42 chr11 87322146 87322578 + 2 NA non-coding (NR_033149, exon 14 of 14) non-coding (NR_033149, exon 14 of 14) 284428 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 292-115 chr12 120900038 120900304 + 2 NA intron (NM_139015, intron 1 of 10) intron (NM_139015, intron 1 of 10) 4187 NM_139015 121665 Hs.507087 NM_139015 ENSG00000157837 SPPL3 IMP2|MDHV1887|PRO4332|PSH1|PSL4 signal peptide peptidase like 3 protein-coding 254-199 chr2 150248662 150248811 + 2 NA intron (NR_146972, intron 1 of 2) L1MB8|LINE|L1 8271 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 306-283 chr20 48102302 48102530 + 2 NA Intergenic MIR|SINE|MIR -112299 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 428-116 chr2 12003458 12003753 + 2 NA Intergenic Intergenic -3511 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 544-103 chr19 57141152 57141515 + 2 NA intron (NM_052882, intron 2 of 4) AluSx|SINE|Alu 3869 NM_052882 114026 Hs.348622 NM_052882 ENSG00000141946 ZIM3 ZNF264|ZNF657 zinc finger imprinted 3 protein-coding 328-101 chr12 24304997 24305298 + 2 NA intron (NM_152989, intron 3 of 17) intron (NM_152989, intron 3 of 17) 81876 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 336-604 chrX 122389420 122389615 + 2 NA Intergenic L1MA7|LINE|L1 -794726 NM_000828 2892 Hs.377070 NM_000828 ENSG00000125675 GRIA3 GLUR-C|GLUR-K3|GLUR3|GLURC|GluA3|MRX94 glutamate ionotropic receptor AMPA type subunit 3 protein-coding 285-406 chr8 69721139 69721397 + 2 NA intron (NM_001146009, intron 3 of 7) MLT1J|LTR|ERVL-MaLR 111901 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 331-477 chr6 155859557 155859734 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -87152 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 379-264 chr5 56217128 56217468 + 2 NA intron (NM_024669, intron 2 of 11) Tigger1|DNA|TcMar-Tigger 16032 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 460-108 chr17 33536598 33537005 + 2 NA intron (NM_001094, intron 1 of 9) AluJb|SINE|Alu -3041 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 282-482 chr9 34488665 34488919 + 2 NA intron (NM_001281428, intron 4 of 19) MIR3|SINE|MIR 29987 NM_012144 27019 Hs.112667 NM_012144 ENSG00000122735 DNAI1 CILD1|DIC1|ICS1|PCD dynein axonemal intermediate chain 1 protein-coding 383-291 chr4 89157119 89157376 + 2 NA Intergenic (TATAATA)n|Simple_repeat|Simple_repeat 44430 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 285-425 chr8 118363987 118364164 + 2 NA intron (NM_001363274, intron 4 of 4) intron (NM_001363274, intron 4 of 4) -252256 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 176-85 chr3 83267507 83267668 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 1281445 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 382-175 chr2 26397140 26397437 + 2 NA Intergenic MIRb|SINE|MIR -4632 NM_145038 92749 Hs.393714 NM_145038 ENSG00000157856 DRC1 C2orf39|CCDC164|CILD21 dynein regulatory complex subunit 1 protein-coding 718-72 chr5 56428235 56428716 + 2 NA Intergenic Intergenic 53294 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 426-103 chr17 57152502 57152754 + 2 NA Intergenic L2a|LINE|L2 57139 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 325-224 chr17 61438501 61438761 + 2 NA Intergenic AluSq|SINE|Alu -13791 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 142-68 chr6 114580257 114580343 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -517423 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 408-255 chr4 177421774 177422057 + 2 NA Intergenic L1MC1|LINE|L1 20522 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 710-53 chr20 47035859 47036377 + 2 NA intron (NM_172110, intron 5 of 13) MIRb|SINE|MIR -130849 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 653-76 chr2 203055300 203055684 + 2 NA intron (NM_001114132, intron 4 of 54) AluJr|SINE|Alu 40613 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 297-424 chr6 162300901 162301058 + 2 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -426153 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 276-303 chr3 108252485 108252678 + 2 NA Intergenic L1MD1|LINE|L1 -30157 NM_018010 55081 Hs.412196 NM_018010 ENSG00000114446 IFT57 ESRRBL1|HIPPI|MHS4R2|OFD18 intraflagellar transport 57 protein-coding 595-130 chr5 35866286 35866728 + 2 NA intron (NR_120485, intron 2 of 5) L1ME2|LINE|L1 9616 NM_002185 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 401-91 chr14 60699867 60700108 + 2 NA Intergenic L1MA5A|LINE|L1 24364 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 587-37 chr12 16433897 16434311 + 2 NA Intergenic Intergenic 80687 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 452-90 chr15 71011079 71011365 + 2 NA intron (NM_017691, intron 13 of 15) intron (NM_017691, intron 13 of 15) 118779 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 685-43 chr2 51923331 51923946 + 2 NA intron (NR_135237, intron 7 of 10) L1MEd|LINE|L1 -447010 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 672-69 chr3 16675208 16675837 + 2 NA Intergenic MER4-int|LTR|ERV1 -70099 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 321-125 chr12 20513613 20513799 + 2 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -58158 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 202-71 chr14 51593654 51593818 + 2 NA intron (NR_047477, intron 1 of 3) intron (NR_047477, intron 1 of 3) 6216 NR_047477 100874185 Hs.578226 NR_047477 ENSG00000258537 FRMD6-AS2 - FRMD6 antisense RNA 2 ncRNA 270-397 chr8 108975955 108976113 + 2 NA Intergenic Intergenic -110594 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 270-113 chr14 71272615 71272770 + 2 NA Intergenic Tigger9b|DNA|TcMar-Tigger -47784 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 493-283 chr7 97165608 97165954 + 2 NA intron (NM_020186, intron 1 of 1) intron (NM_020186, intron 1 of 1) 49188 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 212-49 chr10 104174518 104174726 + 2 NA intron (NM_025145, intron 19 of 37) L1M5|LINE|L1 44261 NR_030340 693194 NR_030340 ENSG00000208033 MIR609 MIRN609|hsa-mir-609 microRNA 609 ncRNA 551-187 chr7 34662589 34662946 + 2 NA intron (NM_207172, intron 1 of 8) intron (NM_207172, intron 1 of 8) 4528 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 301-250 chr20 40394304 40394570 + 2 NA Intergenic MIR3|SINE|MIR 294799 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 381-376 chr8 43541581 43541946 + 2 NA Intergenic Intergenic 249321 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 514-132 chr18 73394584 73394899 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 69800 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 149-79 chr4 110890425 110890537 + 2 NA Intergenic Intergenic -29834 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 420-299 chr8 137232996 137233297 + 2 NA Intergenic AluSc5|SINE|Alu 180442 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 338-548 chr8 105213532 105213818 + 2 NA Intergenic Intergenic -104763 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 327-393 chr5 41254871 41255103 + 2 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 6482 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 295-196 chr2 12840461 12840619 + 2 NA Intergenic Intergenic 103173 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 310-560 chr9 107949540 107949743 + 2 NA Intergenic Intergenic -459872 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 359-504 chr9 24343664 24343933 + 2 NA Intergenic Intergenic 201878 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 521-249 chr8 19338184 19338673 + 2 NA intron (NM_001363110, intron 4 of 8) MLT1D|LTR|ERVL-MaLR 24452 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 295-287 chr3 28037715 28037988 + 2 NA Intergenic Intergenic -203715 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 277-355 chr6 96187885 96188122 + 2 NA intron (NM_006581, intron 2 of 2) intron (NM_006581, intron 2 of 2) 172029 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 265-216 chr20 54061423 54061666 + 2 NA intron (NM_001366297, intron 1 of 8) intron (NM_001366297, intron 1 of 8) -2524 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 257-74 chr11 111116029 111116214 + 2 NA Intergenic Intergenic -18803 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 937-21 chr3 130371126 130371802 + 2 NA intron (NM_001278298, intron 1 of 40) L1MB7|LINE|L1 25948 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 248-358 chr6 141700462 141700586 + 2 NA Intergenic Intergenic 388275 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 532-185 chr4 75899852 75900234 + 2 NA intron (NM_006239, intron 1 of 16) MIRb|SINE|MIR 2409 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 229-139 chr16 79157522 79157716 + 2 NA intron (NM_001291997, intron 7 of 7) MER74A|LTR|ERVL 443118 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 365-61 chr10 102200459 102200710 + 2 NA Intergenic LTR12C|LTR|ERV1 -25715 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 362-428 chr8 49393698 49393925 + 2 NA Intergenic Intergenic 118369 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 277-469 chrX 99126216 99126381 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 1283975 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 292-341 chr5 18164403 18164612 + 2 NA Intergenic AluSx1|SINE|Alu 357233 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 360-114 chr14 37799115 37799377 + 2 NA intron (NM_001368142, intron 4 of 12) intron (NM_001368142, intron 4 of 12) 26863 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 363-33 chr1 235286070 235286359 + 2 NA intron (NR_135074, intron 2 of 24) AluJb|SINE|Alu 41273 NM_001206794 51742 Hs.575782 NM_016374 ENSG00000054267 ARID4B BCAA|BRCAA1|RBBP1L1|RBP1L1|SAP180 AT-rich interaction domain 4B protein-coding 281-387 chr6 52112634 52112880 + 2 NA Intergenic AluYc|SINE|Alu -25144 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 306-502 chr8 69164218 69164499 + 2 NA Intergenic Intergenic -60168 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 337-260 chr2 102984950 102985199 + 2 NA promoter-TSS (NR_135530) promoter-TSS (NR_135530) -645 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 362-156 chr14 77171215 77171457 + 2 NA Intergenic L1MB7|LINE|L1 -10462 NM_020431 57156 Hs.22452 NM_020431 ENSG00000165548 TMEM63C C14orf171|CSC1|hsCSC1 transmembrane protein 63C protein-coding 548-155 chr3 131094023 131094400 + 2 NA intron (NM_001353043, intron 4 of 17) MER57A-int|LTR|ERV1 66483 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 359-435 chr6 141316032 141316223 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 632313 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 238-148 chr18 38774339 38774519 + 2 NA Intergenic Intergenic 847746 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 780-7 chr10 41877268 41877691 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 490566 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 603-144 chr6 104495771 104496356 + 2 NA Intergenic Intergenic 363483 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 401-48 chr11 8302020 8302346 + 2 NA Intergenic L1MEi|LINE|L1 -33396 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 214-235 chr4 47320503 47320669 + 2 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 143116 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 479-110 chr2 125642131 125642500 + 2 NA Intergenic Intergenic 475670 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 653-102 chr5 91771312 91771910 + 2 NA Intergenic Intergenic -388294 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 357-30 chr10 16593119 16593394 + 2 NA 3' UTR (NM_012425, exon 9 of 9) 3' UTR (NM_012425, exon 9 of 9) -71377 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 286-248 chr20 37538532 37538755 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -10712 NM_001167820 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 296-9 chr1 93748185 93748345 + 2 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) 27118 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 389-171 chr2 71900277 71900648 + 2 NA Intergenic MIR|SINE|MIR 247400 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 382-51 chr10 120094109 120094427 + 2 NA Intergenic MIRb|SINE|MIR 135755 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 387-312 chr6 80697719 80698074 + 2 NA Intergenic LTR37B|LTR|ERV1 591225 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 158-47 chr2 7677832 7677940 + 2 NA Intergenic Intergenic 221769 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 593-106 chr4 76425865 76426227 + 2 NA Intergenic MER87B|LTR|ERV1 -9183 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 285-8 chr1 66598437 66598694 + 2 NA intron (NM_001350218, intron 1 of 22) MSTA|LTR|ERVL-MaLR -29875 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 446-63 chr11 55197580 55197845 + 2 NA Intergenic ALR/Alpha|Satellite|centr -64443 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 528-97 chr15 81975810 81976236 + 2 NA Intergenic L1ME3G|LINE|L1 69995 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 174-65 chr2 72214898 72215033 + 2 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -67103 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 282-297 chr3 61055264 61055487 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 196077 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 525-108 chr2 17003344 17003761 + 2 NA Intergenic Intergenic -337718 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 590-146 chr6 71261333 71261768 + 2 NA Intergenic Intergenic -27261 NM_001324266 79627 Hs.648434 NM_024576 ENSG00000119900 OGFRL1 dJ331H24.1 opioid growth factor receptor like 1 protein-coding 390-280 chr5 5287517 5287814 + 2 NA intron (NM_139056, intron 18 of 22) intron (NM_139056, intron 18 of 22) -135012 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 207-217 chr4 66569796 66569940 + 2 NA Intergenic Intergenic 293044 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 398-92 chr14 25572687 25573037 + 2 NA Intergenic MIRc|SINE|MIR -522565 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 271-240 chr21 27694958 27695107 + 2 NA Intergenic Intergenic -27347 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 302-325 chr4 63946506 63946701 + 2 NA Intergenic L1PA15|LINE|L1 462847 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 313-342 chr3 61363758 61363925 + 2 NA Intergenic L1MB8|LINE|L1 -112380 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 294-142 chr15 78056309 78056481 + 2 NA intron (NM_144572, intron 1 of 12) intron (NM_144572, intron 1 of 12) 21257 NM_144572 23102 Hs.567426 NM_015079 ENSG00000167202 TBC1D2B - TBC1 domain family member 2B protein-coding 247-85 chr12 40905644 40905799 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) -2636 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 430-126 chr18 60280413 60280721 + 2 NA Intergenic L1ME3B|LINE|L1 92208 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 273-457 chr8 121852361 121852576 + 2 NA Intergenic Intergenic -211028 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 245-293 chr5 144472453 144472647 + 2 NA intron (NM_001370487, intron 2 of 2) MLT1K|LTR|ERVL-MaLR 267159 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 528-90 chr15 43480940 43481435 + 2 NA intron (NM_001355001, intron 4 of 28) intron (NM_001355001, intron 4 of 28) 11969 NM_001141979 7158 Hs.440968 NM_005657 ENSG00000067369 TP53BP1 53BP1|TDRD30|p202|p53BP1 tumor protein p53 binding protein 1 protein-coding 331-523 chr8 68406254 68406544 + 2 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -74908 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 390-191 chr2 103486803 103487176 + 2 NA Intergenic Intergenic -502560 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 506-115 chr18 49274530 49274887 + 2 NA intron (NM_001353210, intron 10 of 16) L1MB8|LINE|L1 185937 NM_001353215 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 247-276 chr3 157562022 157562238 + 2 NA intron (NM_001099777, intron 2 of 4) L1ME1|LINE|L1 18786 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 210-4 chr1 72137845 72138000 + 2 NA intron (NM_173808, intron 1 of 6) L1MEc|LINE|L1 144617 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 471-73 chr13 66951834 66952118 + 2 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) -25413 NR_046636 100874086 Hs.577908 NR_046636 ENSG00000225263 PCDH9-AS3 - PCDH9 antisense RNA 3 ncRNA 234-255 chr3 139181897 139182069 + 2 NA Intergenic Intergenic 51539 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 217-101 chr13 54611323 54611521 + 2 NA Intergenic Intergenic -299374 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 251-223 chr22 34011486 34011670 + 2 NA Intergenic L1MEg|LINE|L1 -88690 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 309-376 chr4 13682040 13682285 + 2 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 26983 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 310-210 chr19 12281520 12281816 + 2 NA intron (NM_001353552, intron 1 of 3) L1MCa|LINE|L1 12944 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 316-130 chr12 41094126 41094412 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -94051 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 125-40 chr3 180768800 180768881 + 2 NA intron (NR_109986, intron 4 of 13) intron (NR_109986, intron 4 of 13) -89351 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 311-329 chr3 4897241 4897528 + 2 NA non-coding (NR_125914, exon 3 of 3) non-coding (NR_125914, exon 3 of 3) 9117 NR_125914 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 513-158 chr20 7328185 7328521 + 2 NA Intergenic Intergenic -19080 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 326-10 chr1 59192109 59192384 + 2 NA Intergenic MIRb|SINE|MIR -45439 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 167-54 chr2 39890200 39890295 + 2 NA Intergenic Intergenic -27387 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 362-83 chr11 5519256 5519446 + 2 NA intron (NR_133006, intron 2 of 2) intron (NR_133006, intron 2 of 2) 2434 NR_133006 101927763 NR_133006 OLFM5P - olfactomedin family member 5, pseudogene pseudo 132-49 chr3 34677658 34677752 + 2 NA Intergenic Intergenic 716318 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 367-445 chr8 49945465 49945691 + 2 NA intron (NR_135798, intron 1 of 15) intron (NR_135798, intron 1 of 15) 34171 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 396-349 chr8 67889499 67889765 + 2 NA Intergenic L1MB4|LINE|L1 -62414 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 326-56 chr10 16364955 16365131 + 2 NA Intergenic AluSx1|SINE|Alu -71900 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 259-285 chr4 74349519 74349698 + 2 NA Intergenic Intergenic -15537 NM_001432 2069 Hs.115263 NM_001432 ENSG00000124882 EREG EPR|ER|Ep epiregulin protein-coding 340-10 chr1 51844201 51844487 + 2 NA intron (NM_001101662, intron 1 of 30) MLT1B|LTR|ERVL-MaLR -7942 NR_031580 100313892 NR_031580 ENSG00000283899 MIR761 hsa-mir-761 microRNA 761 ncRNA 377-350 chr6 93210844 93211142 + 2 NA Intergenic Intergenic 208566 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 430-136 chr2 16998994 16999399 + 2 NA Intergenic L1MA3|LINE|L1 -333362 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 362-20 chr1 95712670 95712933 + 2 NA Intergenic Intergenic 202685 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 328-404 chr4 64749370 64749540 + 2 NA Intergenic MER21C|LTR|ERVL 255045 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 215-184 chr22 27346061 27346223 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 35491 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 246-235 chr20 55915012 55915251 + 2 NA Intergenic MIR|SINE|MIR 90388 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 407-274 chr6 48266180 48266500 + 2 NA Intergenic L1PA8|LINE|L1 -197651 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 488-231 chr6 35831951 35832283 + 2 NA TTS (NR_034069) TTS (NR_034069) 26765 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 298-278 chr22 29561213 29561399 + 2 NA intron (NM_001202502, intron 6 of 9) intron (NM_001202502, intron 6 of 9) -7549 NM_001002877 8563 Hs.75361 NM_003678 ENSG00000100296 THOC5 C22orf19|Fmip|PK1.3|fSAP79 THO complex 5 protein-coding 426-213 chr4 145810202 145810570 + 2 NA intron (NM_178835, intron 8 of 14) intron (NM_178835, intron 8 of 14) 128437 NM_001306215 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 437-238 chr6 50343342 50343631 + 2 NA Intergenic Intergenic -293557 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 341-579 chrX 82921912 82922104 + 2 NA Intergenic L1PA15|LINE|L1 -586282 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 274-15 chr1 115773683 115773918 + 2 NA Intergenic Intergenic -4995 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 281-357 chr5 46352232 46352490 + 2 NA Intergenic ALR/Alpha|Satellite|centr -655981 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 266-51 chr10 107287776 107288028 + 2 NA Intergenic L1MA2|LINE|L1 -123196 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 212-48 chr10 82368122 82368330 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -135306 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 254-433 chr8 138746361 138746524 + 2 NA intron (NM_152888, intron 22 of 64) intron (NM_152888, intron 22 of 64) 167599 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 218-100 chr14 84611560 84611738 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -660283 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 223-25 chr1 216516843 216517057 + 2 NA intron (NM_001243518, intron 7 of 7) intron (NM_001243518, intron 7 of 7) -93502 NM_206933 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 205-217 chr5 30768504 30768677 + 2 NA Intergenic Intergenic -425096 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 336-285 chr2 124951835 124952010 + 2 NA Intergenic HAL1|LINE|L1 926635 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 474-289 chr8 103989957 103990319 + 2 NA intron (NR_145711, intron 14 of 21) intron (NR_145711, intron 14 of 21) 170918 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 560-90 chr2 193577987 193578451 + 2 NA Intergenic L1MA10|LINE|L1 -766050 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 191-148 chr4 55003141 55003268 + 2 NA Intergenic Intergenic 122391 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 233-179 chr2 122643810 122643962 + 2 NA Intergenic Intergenic 429595 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 403-290 chr7 95075797 95076098 + 2 NA intron (NM_017650, intron 2 of 15) MER34A|LTR|ERV1 166049 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 141-44 chr20 36456830 36456931 + 2 NA intron (NM_001365621, intron 7 of 12) intron (NM_001365621, intron 7 of 12) -4588 NM_001042486 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 293-103 chr13 64250512 64250776 + 2 NA Intergenic L1MA4|LINE|L1 -174633 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 394-22 chr1 174031557 174031909 + 2 NA Intergenic Intergenic -38661 NM_001300851 149041 Hs.30258 NM_172071 ENSG00000135870 RC3H1 RNF198|ROQUIN ring finger and CCCH-type domains 1 protein-coding 353-325 chr3 70923663 70923938 + 2 NA Intergenic MIRb|SINE|MIR 141124 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 361-263 chr21 23905604 23905824 + 2 NA Intergenic Intergenic 415663 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 267-351 chr5 141362925 141363122 + 2 NA TTS (NM_032096) TTS (NM_032096) -1308 NM_032054 56110 Hs.368160 NM_018918 ENSG00000253485 PCDHGA5 CDH-GAMMA-A5|ME3|PCDH-GAMMA-A5 protocadherin gamma subfamily A, 5 protein-coding 307-232 chr2 55762268 55762499 + 2 NA Intergenic Intergenic -68539 NM_033109 87178 Hs.388733 NM_033109 ENSG00000138035 PNPT1 COXPD13|DFNB70|OLD35|PNPASE|old-35 polyribonucleotide nucleotidyltransferase 1 protein-coding 261-23 chr1 177566947 177567137 + 2 NA Intergenic Intergenic -133482 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 227-333 chr7 7515971 7516134 + 2 NA intron (NM_001037763, intron 7 of 34) intron (NM_001037763, intron 7 of 34) 19821 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 422-163 chr2 220888672 220888931 + 2 NA Intergenic MLT2C2|LTR|ERVL 683503 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 428-8 chr1 154063274 154063646 + 2 NA intron (NM_001159484, intron 17 of 37) L2c|LINE|L2 41132 NR_049883 100847024 NR_049883 ENSG00000263987 MIR5698 - microRNA 5698 ncRNA 502-226 chr5 111368364 111368708 + 2 NA intron (NM_001323376, intron 2 of 8) intron (NM_001323376, intron 2 of 8) -143690 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 321-87 chr11 8898514 8898801 + 2 NA intron (NM_005418, intron 1 of 22) MER58A|DNA|hAT-Charlie 12294 NM_005418 6764 Hs.117715 NM_005418 ENSG00000166444 ST5 DENND2B|HTS1|p126 suppression of tumorigenicity 5 protein-coding 324-263 chr2 76282814 76283103 + 2 NA Intergenic Intergenic -572043 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 288-100 chr13 82222278 82222438 + 2 NA Intergenic Intergenic -995375 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 482-200 chr5 46217591 46217916 + 2 NA Intergenic ALR/Alpha|Satellite|centr -521373 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 590-65 chr18 58143442 58143861 + 2 NA intron (NM_001144964, intron 1 of 30) intron (NM_001144964, intron 1 of 30) -5669 NM_001144969 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 322-456 chr6 55269913 55270133 + 2 NA intron (NM_001526, intron 5 of 7) intron (NM_001526, intron 5 of 7) -57446 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 353-143 chr14 61119742 61119932 + 2 NA Intergenic HERVIP10FH-int|LTR|ERV1 -138147 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 260-123 chr14 19922707 19922890 + 2 NA Intergenic L1MD2|LINE|L1 2191 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 312-284 chr20 14676828 14677033 + 2 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) 122546 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 224-130 chr19 34087268 34087409 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -85166 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 186-155 chr7 94505758 94505865 + 2 NA Intergenic L2|LINE|L2 -3998 NM_001363426 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 313-366 chr3 173957266 173957430 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -36552 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 296-328 chr4 30521438 30521699 + 2 NA Intergenic L1MEd|LINE|L1 -198801 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 188-117 chr21 30826562 30826686 + 2 NA Intergenic Intergenic 3135 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 253-57 chr10 82332876 82333045 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -100040 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 262-17 chr1 88208145 88208349 + 2 NA Intergenic MIRb|SINE|MIR -475897 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 258-35 chr1 235686825 235687041 + 2 NA intron (NM_000081, intron 48 of 52) intron (NM_000081, intron 48 of 52) -36179 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 369-417 chr8 116047448 116047652 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 277509 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 121-76 chrX 8457558 8457667 + 2 NA Intergenic Intergenic -7218 NM_001001888 425054 Hs.279737 NM_001001888 ENSG00000205642 VCX3B VCX-C|VCXC variable charge X-linked 3B protein-coding 207-92 chr15 71504780 71504933 + 2 NA intron (NM_024817, intron 6 of 16) L1MD3|LINE|L1 -42380 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 385-220 chr21 16039859 16040098 + 2 NA Intergenic Intergenic -30510 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 618-45 chr17 69800388 69800835 + 2 NA intron (NR_109972, intron 3 of 4) L2a|LINE|L2 -161096 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 244-287 chr5 19405099 19405328 + 2 NA Intergenic MIRb|SINE|MIR 481059 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 193-133 chr20 55227102 55227240 + 2 NA Intergenic L1M4a1|LINE|L1 -195872 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 351-425 chr6 151519725 151519909 + 2 NA intron (NM_025059, intron 1 of 10) MER41B|LTR|ERV1 25800 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 144-49 chr2 107339098 107339204 + 2 NA intron (NR_049853, intron 1 of 3) MIR|SINE|MIR 10374 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 246-259 chr3 84306988 84307131 + 2 NA Intergenic Intergenic 562516 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 739-36 chr2 65467028 65467619 + 2 NA Intergenic AluJb|SINE|Alu -34724 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 320-356 chr3 96360546 96360830 + 2 NA TTS (NR_107027) TTS (NR_107027) 724 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 358-179 chr19 31804650 31804977 + 2 NA Intergenic Intergenic 212532 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 462-107 chr16 80749392 80749753 + 2 NA intron (NM_152342, intron 1 of 6) L1M5|LINE|L1 55026 NM_152342 124359 Hs.60257 NM_152342 ENSG00000166446 CDYL2 PCCP1 chromodomain Y like 2 protein-coding 144-59 chr3 98495559 98495685 + 2 NA Intergenic L1ME4a|LINE|L1 -2059 NM_001004737 402135 Hs.632558 NM_001004737 ENSG00000231861 OR5K2 OR3-9 olfactory receptor family 5 subfamily K member 2 protein-coding 189-219 chr8 136112633 136112759 + 2 NA Intergenic MIRb|SINE|MIR -418102 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 452-217 chr5 125594574 125594873 + 2 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 101462 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 308-461 chr7 46464359 46464645 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 232620 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 196-199 chr5 23408930 23409072 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -98608 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 225-391 chr9 81420228 81420423 + 2 NA Intergenic L1MEd|LINE|L1 269210 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 384-120 chr15 63033785 63034142 + 2 NA Intergenic L1ME3G|LINE|L1 -8784 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 345-438 chr5 120838622 120838841 + 2 NA Intergenic Intergenic 307267 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 161-45 chr2 5924645 5924734 + 2 NA Intergenic Intergenic -7998 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 309-72 chr11 15303627 15303921 + 2 NA Intergenic Intergenic 154672 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 324-518 chr8 38164655 38164883 + 2 NA intron (NR_045492, intron 2 of 2) AluJb|SINE|Alu 11724 NM_014462 27257 Hs.425311 NM_014462 ENSG00000175324 LSM1 CASM|YJL124C LSM1 homolog, mRNA degradation associated protein-coding 270-208 chr20 40805012 40805228 + 2 NA Intergenic L2c|LINE|L2 -90497 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 185-94 chr2 61546633 61546797 + 2 NA Intergenic Intergenic -8359 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 554-3 chr1 23671081 23671478 + 2 NA Intergenic Intergenic -20500 NM_001199802 6135 Hs.719951 NM_000975 ENSG00000142676 RPL11 DBA7|GIG34|L11|uL5 ribosomal protein L11 protein-coding 526-166 chr3 25771176 25771623 + 2 NA intron (NM_018297, intron 2 of 11) L1PB1|LINE|L1 12044 NM_018297 55768 Hs.368960 NM_018297 ENSG00000151092 NGLY1 CDDG|CDG1V|PNG1|PNGase N-glycanase 1 protein-coding 281-272 chr21 29380467 29380679 + 2 NA Intergenic Intergenic 8072 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 305-306 chr20 25617793 25618071 + 2 NA intron (NM_152667, intron 1 of 1) intron (NM_152667, intron 1 of 1) 6082 NM_152667 140838 Hs.143137 NM_152667 ENSG00000170191 NANP C20orf147|HDHD4|dJ694B14.3 N-acetylneuraminic acid phosphatase protein-coding 323-104 chr12 12293197 12293423 + 2 NA Intergenic Intergenic -26266 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 275-125 chr16 25346469 25346636 + 2 NA Intergenic L1M5|LINE|L1 -88707 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 332-65 chr10 69594940 69595238 + 2 NA Intergenic AluSx|SINE|Alu -21667 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 440-166 chr3 104679589 104679959 + 2 NA Intergenic L1MA3|LINE|L1 -686939 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 260-451 chr8 139351387 139351643 + 2 NA Intergenic Intergenic 351608 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 236-178 chr2 103539800 103539945 + 2 NA Intergenic L1MEb|LINE|L1 -555443 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 342-116 chr12 59709224 59709476 + 2 NA intron (NM_001270623, intron 3 of 5) LFSINE_Vert|SINE|tRNA 19980 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 292-446 chr8 129389511 129389715 + 2 NA intron (NR_130918, intron 1 of 2) intron (NR_130918, intron 1 of 2) 94529 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 256-270 chr3 112154059 112154277 + 2 NA intron (NM_001320531, intron 26 of 27).2 intron (NM_001320531, intron 26 of 27).2 20745 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 365-29 chr1 221094993 221095260 + 2 NA Intergenic L1P1|LINE|L1 -214986 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 232-317 chr5 161176207 161176383 + 2 NA Intergenic Intergenic -237669 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 155-48 chr18 66370677 66370796 + 2 NA Intergenic L1MC|LINE|L1 233354 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 307-359 chr4 165848140 165848375 + 2 NA Intergenic L1MA4|LINE|L1 -24980 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 521-256 chr8 77656451 77656863 + 2 NA Intergenic Intergenic 205960 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 365-122 chr14 61223652 61223907 + 2 NA Intergenic Intergenic 57559 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 389-214 chr21 32180306 32180544 + 2 NA Intergenic Intergenic -94130 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 419-53 chr11 50667771 50668092 + 2 NA Intergenic ALR/Alpha|Satellite|centr 258784 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 275-265 chr4 63298716 63298955 + 2 NA Intergenic L1MEg|LINE|L1 1110615 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 605-125 chr8 141597215 141597581 + 2 NA Intergenic Intergenic -90168 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 514-202 chr4 75822866 75823332 + 2 NA Intergenic MIR|SINE|MIR 79353 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 323-347 chr3 148040767 148040950 + 2 NA Intergenic Intergenic -37301 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 219-71 chr12 46500366 46500520 + 2 NA intron (NR_125380, intron 3 of 3) L1M3d|LINE|L1 116336 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 212-189 chr20 57531100 57531261 + 2 NA Intergenic L2a|LINE|L2 -5528 NM_001269051 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 501-30 chr10 105542523 105542905 + 2 NA Intergenic Intergenic 277619 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 305-267 chr2 115482298 115482518 + 2 NA intron (NM_001321912, intron 4 of 25) L1MB7|LINE|L1 138593 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 584-33 chr12 599024 599561 + 2 NA intron (NM_016533, intron 1 of 3) AluSq10|SINE|Alu 11124 NM_001294345 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 263-206 chr2 82038807 82039001 + 2 NA Intergenic L1MDa|LINE|L1 -571958 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 269-330 chr5 163951319 163951551 + 2 NA Intergenic Intergenic 445816 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 342-368 chr4 96748134 96748441 + 2 NA intron (NR_147149, intron 3 of 3) L1PB|LINE|L1 437584 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 277-173 chr19 56608473 56608658 + 2 NA intron (NR_163263, intron 2 of 4) MLT1F2|LTR|ERVL-MaLR 13263 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 476-67 chr12 125618629 125618959 + 2 NA intron (NM_052907, intron 5 of 8) MER113B|DNA|hAT-Charlie -3658 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 349-208 chr17 59143110 59143360 + 2 NA intron (NM_182620, intron 1 of 3) AluSx1|SINE|Alu -5363 NR_030411 768216 NR_030411 ENSG00000211514 MIR454 MIRN454|hsa-mir-454|mir-454 microRNA 454 ncRNA 646-27 chr12 13633477 13633873 + 2 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -256930 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 234-94 chr14 49553144 49553343 + 2 NA Intergenic MER4D|LTR|ERV1 33137 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 127-69 chr6 45241889 45241988 + 2 NA intron (NM_001350325, intron 2 of 10) intron (NM_001350325, intron 2 of 10) -44168 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 279-447 chrX 56576908 56577104 + 2 NA Intergenic L1PA16|LINE|L1 13413 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 337-520 chr7 49057805 49058083 + 2 NA Intergenic L1MA4|LINE|L1 133397 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 371-32 chr1 244812492 244812773 + 2 NA Intergenic AluSx1|SINE|Alu -22674 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 373-9 chr1 44885328 44885548 + 2 NA intron (NM_001166588, intron 6 of 9) L1ME4a|LINE|L1 -42185 NM_003738 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 377-426 chr9 71313917 71314160 + 2 NA intron (NM_001366143, intron 1 of 25) L1M5|LINE|L1 132933 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 218-30 chr10 85604982 85605167 + 2 NA intron (NM_017551, intron 15 of 15) intron (NM_017551, intron 15 of 15) 27343 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 185-173 chr5 139264237 139264366 + 2 NA Intergenic L2a|LINE|L2 -9451 NM_001282278 9782 Hs.268939 NM_018834 ENSG00000015479 MATR3 ALS21|MPD2|VCPDM matrin 3 protein-coding 305 chr1 13459268 13459472 + 2 NA Intergenic Intergenic 48920 NM_001099852 645425 NM_001099852 ENSG00000204478 PRAMEF20 PRAMEF21 PRAME family member 20 protein-coding 411-263 chr6 141256992 141257333 + 2 NA Intergenic L1MB8|LINE|L1 573348 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 191-112 chr2 177276278 177276426 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -11221 NM_001313902 4780 Hs.744006 NM_006164 ENSG00000116044 NFE2L2 HEBP1|IMDDHH|NRF2 nuclear factor, erythroid 2 like 2 protein-coding 352-100 chr12 40139129 40139341 + 2 NA Intergenic Intergenic -17004 NR_146526 105369734 NR_146526 LINC02471 - long intergenic non-protein coding RNA 2471 ncRNA 312-504 chr7 159170807 159171031 + 2 NA Intergenic Intergenic -25962 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 177-24 chr10 87980165 87980275 + 2 NA Intergenic MER33|DNA|hAT-Charlie 116595 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 228-361 chr9 9463497 9463630 + 2 NA intron (NM_002839, intron 8 of 45) intron (NM_002839, intron 8 of 45) -335829 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 370-257 chr2 186057061 186057376 + 2 NA intron (NR_110218, intron 3 of 5) (TA)n|Simple_repeat|Simple_repeat 29099 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 124-31 chr17 39859247 39859339 + 2 NA intron (NM_012481, intron 1 of 7) intron (NM_012481, intron 1 of 7) 4895 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 217-205 chr20 31368952 31369151 + 2 NA intron (NM_054112, intron 1 of 1) CR1_Mam|LINE|CR1 450 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 587-120 chr4 67114432 67114843 + 2 NA Intergenic L1PA7|LINE|L1 307363 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 323-70 chr10 108613229 108613536 + 2 NA Intergenic AluJb|SINE|Alu -544089 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 440-170 chr3 190131952 190132260 + 2 NA intron (NR_126419, intron 2 of 3) intron (NR_126419, intron 2 of 3) -9669 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 152-46 chr2 36078704 36078846 + 2 NA Intergenic Intergenic 276795 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 309-497 chr6 160584898 160585081 + 2 NA intron (NM_005577, intron 26 of 38) intron (NM_005577, intron 26 of 38) -73865 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 257-180 chr2 37787653 37787873 + 2 NA Intergenic Intergenic 41948 NR_110011 101929559 Hs.468200 NR_110011 ENSG00000237803 LINC00211 NCRNA00211 long intergenic non-protein coding RNA 211 ncRNA 222-335 chr7 29363708 29363878 + 2 NA intron (NM_001293071, intron 2 of 11) L2a|LINE|L2 -115919 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 359-249 chr2 138893758 138894102 + 2 NA Intergenic Intergenic -3394 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 231-265 chr4 124788726 124788903 + 2 NA Intergenic Intergenic -76082 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 287-290 chr4 105514969 105515239 + 2 NA Intergenic L1PB1|LINE|L1 -37516 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 283-192 chr18 27228923 27229087 + 2 NA Intergenic L1M5|LINE|L1 -43697 NM_031422 83539 Hs.44584 NM_031422 ENSG00000154080 CHST9 GALNAC4ST-2|GalNAc4ST2 carbohydrate sulfotransferase 9 protein-coding 567-100 chr20 55103765 55104282 + 2 NA Intergenic L1MD1|LINE|L1 -319020 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 274-267 chr3 140853199 140853360 + 2 NA Intergenic L1MEd|LINE|L1 -88557 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 333-261 chr2 119026292 119026572 + 2 NA Intergenic Intergenic 84263 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 312-369 chr4 57935085 57935284 + 2 NA Intergenic L1PA16|LINE|L1 509312 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 177-23 chr10 77143155 77143285 + 2 NA intron (NR_120654, intron 1 of 2) L1ME2|LINE|L1 2389 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 251-384 chr8 56714802 56714983 + 2 NA Intergenic Intergenic -155069 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 953-30 chr8 113870550 113871243 + 2 NA Intergenic L1MEg|LINE|L1 -433957 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 574-98 chr20 53525390 53525912 + 2 NA Intergenic Intergenic -27119 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 321-449 chr5 11987094 11987402 + 2 NA Intergenic L1MD3|LINE|L1 -82802 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 546-150 chr3 95154405 95154768 + 2 NA Intergenic (ACACAC)n|Simple_repeat|Simple_repeat 216323 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 232-234 chr3 25398429 25398613 + 2 NA intron (NM_001290300, intron 1 of 7) intron (NM_001290300, intron 1 of 7) -13594 NR_134933 105376997 Hs.536687 NR_134933 RARB-AS1 - RARB antisense RNA 1 ncRNA 571-19 chr10 66876191 66876552 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -49665 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 329-220 chr17 70100791 70101040 + 2 NA intron (NM_170741, intron 2 of 3) intron (NM_170741, intron 2 of 3) -3930 NM_170742 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 670-35 chr14 71946879 71947279 + 2 NA intron (NM_001370288, intron 1 of 16) Tigger20a|DNA|TcMar-Tigger 13552 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 341-254 chr2 80662270 80662550 + 2 NA Intergenic Intergenic 349031 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 607-59 chr17 74099137 74099496 + 2 NA Intergenic L3b|LINE|CR1 -104362 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 337-143 chr13 111864421 111864697 + 2 NA Intergenic Intergenic -28819 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 667-29 chr14 62401926 62402497 + 2 NA Intergenic Intergenic -262238 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 292-345 chr5 29297611 29297815 + 2 NA Intergenic Intergenic 98263 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 239-182 chr2 122825054 122825278 + 2 NA Intergenic Intergenic 248315 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 438-125 chr2 86543115 86543466 + 2 NA intron (NM_001198954, intron 3 of 7) Charlie2b|DNA|hAT-Charlie 20153 NM_016079 51652 Hs.591582 NM_016079 ENSG00000115561 CHMP3 CGI-149|NEDF|VPS24 charged multivesicular body protein 3 protein-coding 372-525 chrX 62997051 62997272 + 2 NA Intergenic MER31B|LTR|ERV1 354171 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 323-58 chr10 65244577 65244834 + 2 NA Intergenic Intergenic -320187 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 212-50 chr10 105485784 105485981 + 2 NA Intergenic Intergenic 334451 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 426-73 chr14 78774803 78775094 + 2 NA intron (NR_073547, intron 8 of 20) MIR|SINE|MIR 371229 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 195-192 chr5 32016213 32016351 + 2 NA intron (NM_178140, intron 6 of 24) intron (NM_178140, intron 6 of 24) -80123 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 337-442 chr5 38745286 38745614 + 2 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -25177 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 336-513 chr7 37488915 37489121 + 2 NA Intergenic Intergenic -39692 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 342-377 chr4 177184322 177184528 + 2 NA Intergenic Intergenic -125449 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 543-255 chr8 139177892 139178357 + 2 NA Intergenic MER51C|LTR|ERV1 -264083 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 377-367 chr7 37019673 37019909 + 2 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 21995 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 483-80 chr15 100796009 100796398 + 2 NA Intergenic L1ME1|LINE|L1 -53549 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 732-70 chr4 62088079 62088538 + 2 NA intron (NR_110595, intron 6 of 7) intron (NR_110595, intron 6 of 7) 73457 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 355-519 chr8 137050697 137050902 + 2 NA Intergenic Intergenic 362789 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 278-85 chr12 130617372 130617594 + 2 NA intron (NM_001351226, intron 2 of 21) intron (NM_001351226, intron 2 of 21) 10973 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 392-214 chr3 152101205 152101536 + 2 NA Intergenic Intergenic 104059 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 605-44 chr19 21284952 21285544 + 2 NA Intergenic AluSq2|SINE|Alu 44162 NM_021269 7562 Hs.466296 NM_021269 ENSG00000182141 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 443-264 chr6 74256465 74256817 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 187190 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 342-514 chr8 75794366 75794610 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 254520 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 331-315 chr20 25090042 25090230 + 2 NA Intergenic Intergenic -7757 NM_014588 30813 Hs.274264 NM_014588 ENSG00000100987 VSX1 CAASDS|KTCN|KTCN1|PPCD|PPCD1|PPD|RINX visual system homeobox 1 protein-coding 241-259 chr4 37098904 37099082 + 2 NA Intergenic Intergenic 97214 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 354-300 chr3 82268288 82268551 + 2 NA intron (NR_147146, intron 3 of 8) L1PA7|LINE|L1 282277 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 330-468 chr6 137783230 137783426 + 2 NA Intergenic L2a|LINE|L2 -44291 NR_121619 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 337-181 chr15 80210335 80210611 + 2 NA intron (NM_001352888, intron 1 of 2) intron (NM_001352888, intron 1 of 2) 41740 NM_001352888 100996492 Hs.20034 NM_001352888 ENSG00000259417 CTXND1 LINC01314 cortexin domain containing 1 protein-coding 278-383 chr6 138986621 138986798 + 2 NA intron (NM_031922, intron 1 of 19) intron (NM_031922, intron 1 of 19) 1552 NM_031922 85021 Hs.334603 NM_031922 ENSG00000135597 REPS1 NBIA7|RALBP1 RALBP1 associated Eps domain containing 1 protein-coding 287-125 chr13 77451261 77451434 + 2 NA Intergenic Intergenic -84327 NM_001160706 8796 Hs.534699 NM_003843 ENSG00000136155 SCEL - sciellin protein-coding 326-394 chr5 10778475 10778679 + 2 NA Intergenic Intergenic -17343 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 417-288 chr8 123809822 123810169 + 2 NA intron (NM_144963, intron 22 of 23) intron (NM_144963, intron 22 of 23) 41556 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 331-253 chr2 39423184 39423450 + 2 NA intron (NM_003618, intron 1 of 33) L1MC2|LINE|L1 13968 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 280-296 chr4 94711994 94712226 + 2 NA Intergenic Intergenic 45423 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 251-432 chrX 67755830 67756056 + 2 NA Intergenic Intergenic 211320 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 164-113 chr8 106585897 106585991 + 2 NA intron (NM_018002, intron 3 of 15) L2a|LINE|L2 -71864 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 188-160 chr5 5927136 5927255 + 2 NA Intergenic Intergenic 410097 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 301-453 chr8 87281429 87281666 + 2 NA intron (NM_173538, intron 6 of 10) (AT)n|Simple_repeat|Simple_repeat 415132 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 231-233 chr3 94532975 94533159 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy -405196 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 191-125 chr20 47851124 47851254 + 2 NA Intergenic L2a|LINE|L2 -64573 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 346-523 chr9 82681868 82682201 + 2 NA Intergenic Intergenic 381108 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 222-333 chr6 151965131 151965307 + 2 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 156112 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 348-383 chr4 175497423 175497645 + 2 NA Intergenic Intergenic 290142 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 316-515 chr7 48560849 48561041 + 2 NA intron (NM_152701, intron 55 of 61) L1MA7|LINE|L1 -363602 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 305-535 chr8 82605319 82605579 + 2 NA Intergenic Intergenic -306655 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 212-202 chr3 2489540 2489722 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 250802 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 322-209 chr17 74140163 74140471 + 2 NA Intergenic L1ME1|LINE|L1 -63361 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 335-501 chr7 46967799 46967986 + 2 NA Intergenic L1MB5|LINE|L1 -270770 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 478-167 chr21 22011230 22011683 + 2 NA intron (NR_109959, intron 5 of 5) intron (NR_109959, intron 5 of 5) 87003 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 307-184 chr17 51799789 51799986 + 2 NA intron (NM_001082533, intron 4 of 9) L1MB7|LINE|L1 358827 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 398-129 chr16 67817758 67818043 + 2 NA intron (NM_001288994, intron 2 of 10) AluSx|SINE|Alu 11011 NM_001288992 55815 Hs.632212 NM_018430 ENSG00000102904 TSNAXIP1 TXI1 translin associated factor X interacting protein 1 protein-coding 344-217 chr19 57752032 57752321 + 2 NA intron (NR_145328, intron 2 of 2) AluJb|SINE|Alu 5361 NR_145328 284309 Hs.720254 NM_173632 ENSG00000152443 ZNF776 - zinc finger protein 776 protein-coding 212-122 chr17 32544839 32545009 + 2 NA intron (NM_015194, intron 21 of 21) intron (NM_015194, intron 21 of 21) 57931 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 235-396 chr9 102501542 102501728 + 2 NA Intergenic Intergenic -18002 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 296-123 chr13 80539093 80539326 + 2 NA Intergenic L1PA7|LINE|L1 -198083 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 292-101 chr12 46886449 46886695 + 2 NA Intergenic Intergenic -60575 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 490-129 chr19 37816128 37816473 + 2 NA Intergenic L1ME4b|LINE|L1 -1111 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 285-29 chr10 19518982 19519164 + 2 NA intron (NM_001142308, intron 31 of 39) intron (NM_001142308, intron 31 of 39) 209477 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 228-66 chr12 39060187 39060342 + 2 NA Intergenic LTR7C|LTR|ERV1 -154673 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 234-75 chr12 40533942 40534150 + 2 NA intron (NM_173600, intron 123 of 173) intron (NM_173600, intron 123 of 173) 140652 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 591-40 chr14 76741940 76742389 + 2 NA Intergenic L1MA4A|LINE|L1 -19304 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 558-140 chr3 106162112 106162496 + 2 NA Intergenic Intergenic -292903 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 340-164 chr15 24897742 24898072 + 2 NA intron (NM_001349456, intron 2 of 12) THE1B|LTR|ERVL-MaLR 41395 NM_001349462 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 525-145 chr21 28467710 28468033 + 2 NA Intergenic Intergenic -71447 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 306-414 chr5 158543054 158543310 + 2 NA Intergenic Intergenic -133409 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 222-296 chr5 73638624 73638813 + 2 NA intron (NM_001177693, intron 1 of 35) intron (NM_001177693, intron 1 of 35) 12560 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 184-23 chr10 34338238 34338415 + 2 NA intron (NM_001184789, intron 15 of 22) intron (NM_001184789, intron 15 of 22) 476970 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 317-189 chr17 56064115 56064298 + 2 NA Intergenic L1PA8A|LINE|L1 -89269 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 263-248 chr22 49699200 49699413 + 2 NA Intergenic L1ME3E|LINE|L1 -41787 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 198-182 chr4 87860498 87860651 + 2 NA Intergenic Intergenic 25871 NM_001291183 56955 Hs.676357 NM_020203 ENSG00000152595 MEPE OF45 matrix extracellular phosphoglycoprotein protein-coding 484-173 chr3 68450631 68451041 + 2 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) -49801 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 456-15 chr1 179402472 179402815 + 2 NA intron (NR_073544, intron 11 of 25) L2|LINE|L2 36599 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 264-347 chr5 166961830 166962008 + 2 NA Intergenic Intergenic -35549 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 326-289 chr20 14770138 14770326 + 2 NA intron (NM_001351663, intron 5 of 17) L1ME4a|LINE|L1 159286 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 383-214 chr2 229038490 229038798 + 2 NA intron (NM_001330157, intron 1 of 1) Charlie2b|DNA|hAT-Charlie 193448 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 958-12 chr17_KI270729v1_random 37022 37533 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 264-176 chr18 38457284 38457536 + 2 NA Intergenic Intergenic 800275 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 265-72 chr12 13843482 13843676 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 136777 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 331-171 chr15 53696686 53696999 + 2 NA intron (NM_182758, intron 13 of 19) intron (NM_182758, intron 13 of 19) 62821 NM_182758 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 276-382 chr5 133521759 133521994 + 2 NA intron (NM_015082, intron 3 of 15) Plat_L3|LINE|CR1 90665 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 130-20 chr13 67879597 67879714 + 2 NA Intergenic Intergenic 507268 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 326-341 chr3 87921891 87922210 + 2 NA intron (NM_001322210, intron 2 of 2) L1MA5|LINE|L1 -60526 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 392-183 chr21 25213024 25213405 + 2 NA Intergenic Intergenic 218487 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 314-212 chr16 68601324 68601490 + 2 NA Intergenic L1MB8|LINE|L1 -43903 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 145-26 chr13 92287443 92287567 + 2 NA intron (NM_004466, intron 7 of 7) L1M4|LINE|L1 64702 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 335-346 chr3 59371243 59371469 + 2 NA Intergenic Intergenic 287141 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 285-350 chr5 113192268 113192496 + 2 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 102556 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 371-191 chr2 148388178 148388505 + 2 NA intron (NM_018328, intron 5 of 14) intron (NM_018328, intron 5 of 14) -256410 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 418-118 chr2 98890255 98890488 + 2 NA intron (NM_207362, intron 1 of 9) L1M4|LINE|L1 45854 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 407-83 chr14 62818128 62818447 + 2 NA intron (NM_139318, intron 8 of 10) L1MA9|LINE|L1 227171 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 676-105 chr7 30353768 30354148 + 2 NA intron (NM_147128, intron 2 of 4) intron (NM_147128, intron 2 of 4) -16092 NR_002186 222161 Hs.112423 NR_002186 DKFZP586I1420 - uncharacterized protein DKFZp586I1420 pseudo 525-137 chr20 12534170 12534657 + 2 NA Intergenic Intergenic 402550 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 393-356 chr8 87152962 87153202 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 286667 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 283-345 chr5 12765163 12765370 + 2 NA intron (NR_033383, intron 3 of 3) L1ME3A|LINE|L1 97407 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 521-54 chr11 103641842 103642180 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -207895 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 513-115 chr18 60234378 60234703 + 2 NA Intergenic L1M5|LINE|L1 138235 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 591-117 chr4 108772116 108772616 + 2 NA Intergenic AluSx|SINE|Alu -9313 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 494-210 chr4 144765511 144765815 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 119507 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 359-90 chr11 63387885 63388064 + 2 NA intron (NM_080866, intron 6 of 9) L1M1|LINE|L1 18189 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 425-52 chr11 28901538 28901900 + 2 NA Intergenic LTR101_Mam|LTR|ERVL -424171 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 242-112 chr14 85087157 85087342 + 2 NA Intergenic Intergenic -184683 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 315-69 chr10 109569267 109569435 + 2 NA Intergenic Intergenic 353895 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 678-87 chr5 51944971 51945402 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -62845 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 457-64 chr14 42962982 42963279 + 2 NA Intergenic Intergenic 1356274 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 233-184 chr2 156230788 156230986 + 2 NA intron (NR_110250, intron 1 of 3) L1PB1|LINE|L1 24044 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 251-110 chr15 58373345 58373523 + 2 NA Intergenic LOR1-int|LTR|ERV1 -58557 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 385-339 chr6 123287413 123287728 + 2 NA intron (NM_006073, intron 24 of 40) intron (NM_006073, intron 24 of 40) -152034 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 373-17 chr1 90418334 90418660 + 2 NA Intergenic Intergenic -239253 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 296-180 chr16 78190199 78190403 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 90647 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 188-223 chrX 94302232 94302397 + 2 NA Intergenic L1PB1|LINE|L1 628108 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 204-245 chr6 24987748 24987883 + 2 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) -51855 NM_001286445 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 415-25 chr1 241692354 241692627 + 2 NA intron (NM_001367482, intron 8 of 27) L1MC1|LINE|L1 40209 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 215-127 chr18 70624682 70624861 + 2 NA Intergenic Intergenic 26183 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 646-81 chr22 33163701 33164193 + 2 NA Intergenic Intergenic 55418 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 419-174 chr3 7553821 7554140 + 2 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) -18696 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 311-462 chr7 15715523 15715789 + 2 NA Intergenic Intergenic 27278 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 300-217 chr2 185310216 185310417 + 2 NA Intergenic L1ME3A|LINE|L1 -143244 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 323-229 chr2 21712269 21712525 + 2 NA Intergenic Intergenic -1745 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 388-319 chr7 7204946 7205194 + 2 NA intron (NM_020156, intron 1 of 3) L1MB3|LINE|L1 22455 NM_020156 56913 Hs.239666 NM_020156 ENSG00000106392 C1GALT1 C1GALT|T-synthase core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 protein-coding 491-94 chr17 69978684 69979146 + 2 NA intron (NR_110875, intron 2 of 4) intron (NR_110875, intron 2 of 4) 17208 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 342-428 chr5 141353068 141353243 + 2 NA TTS (NM_032095) TTS (NM_032095) -1866 NM_018917 56111 Hs.368160 NM_018917 ENSG00000262576 PCDHGA4 PCDH-GAMMA-A4 protocadherin gamma subfamily A, 4 protein-coding 327-435 chr6 56283044 56283307 + 2 NA intron (NM_001318752, intron 1 of 28) L1ME4a|LINE|L1 -35595 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 398-35 chr10 34967245 34967549 + 2 NA Intergenic Intergenic 106886 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 303-127 chr14 71371837 71372031 + 2 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -26403 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 395-8 chr1 73852659 73852909 + 2 NA Intergenic MIRb|SINE|MIR 178105 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 357-31 chr10 18050302 18050629 + 2 NA Intergenic L1MCa|LINE|L1 -39903 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 691-39 chr2 51767134 51767663 + 2 NA intron (NR_135237, intron 6 of 10) L1ME1|LINE|L1 -603250 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 544-50 chr11 121123712 121124122 + 2 NA intron (NM_005422, intron 6 of 22) L2a|LINE|L2 21251 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 561-110 chr20 11511553 11512066 + 2 NA Intergenic Intergenic -238426 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 226-362 chr8 132959463 132959650 + 2 NA intron (NM_003235, intron 27 of 47) Tigger3d|DNA|TcMar-Tigger 87025 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 338-287 chr2 194175027 194175245 + 2 NA Intergenic Intergenic -169133 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 384-353 chr7 97456841 97457088 + 2 NA Intergenic Intergenic -275122 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 235-209 chr21 27071983 27072192 + 2 NA Intergenic Intergenic -104999 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 278-246 chr20 4072602 4072807 + 2 NA Intergenic Intergenic -57146 NM_007219 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 561-42 chr12 14745026 14745530 + 2 NA Intergenic HAL1|LINE|L1 25853 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 247-297 chr4 74254683 74254835 + 2 NA intron (NM_001144978, intron 6 of 7) L1M3e|LINE|L1 -53711 NM_001270990 255324 Hs.401237 NM_001013442 ENSG00000182585 EPGN ALGV3072|EPG|PRO9904 epithelial mitogen protein-coding 573-157 chr5 127382234 127382706 + 2 NA intron (NM_001308121, intron 5 of 13) intron (NM_001308121, intron 5 of 13) 91674 NM_032446 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 254-314 chr5 97566511 97566738 + 2 NA intron (NR_105028, intron 2 of 3) Tigger1|DNA|TcMar-Tigger 61928 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 253-198 chr2 134528507 134528674 + 2 NA intron (NM_030923, intron 4 of 7) L3|LINE|CR1 190410 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 291-297 chr3 141714819 141714973 + 2 NA intron (NR_136190, intron 7 of 7) intron (NR_136190, intron 7 of 7) -23313 NR_037703 9616 Hs.134623 NM_014245 ENSG00000114125 RNF7 CKBBP1|ROC2|SAG|rbx2 ring finger protein 7 protein-coding 341-278 chr2 190713321 190713517 + 2 NA Intergenic Intergenic 54261 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 282-375 chr5 51876818 51877046 + 2 NA Intergenic Intergenic -131099 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 287-237 chr21 35309884 35310078 + 2 NA Intergenic Intergenic -260683 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 598-85 chr3 4541368 4541808 + 2 NA intron (NM_001168272, intron 4 of 60) L1MEd|LINE|L1 48240 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 330-228 chr18 57180954 57181214 + 2 NA Intergenic L1MA7|LINE|L1 -9890 NR_149129 105372138 Hs.574448 NR_149129 ENSG00000267726 LINC02565 - long intergenic non-protein coding RNA 2565 ncRNA 225-245 chr4 65975573 65975731 + 2 NA Intergenic Intergenic -301172 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 561-203 chr8 103843724 103844186 + 2 NA intron (NR_145711, intron 1 of 21) THE1B|LTR|ERVL-MaLR 24735 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 323-69 chr10 107614157 107614392 + 2 NA Intergenic Intergenic -449568 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 268-391 chr8 48404491 48404734 + 2 NA Intergenic Intergenic -146955 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 171-122 chr7 42015767 42015897 + 2 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 221377 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 452-282 chr8 142890327 142890733 + 2 NA Intergenic L1MA2|LINE|L1 -10710 NM_000497 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 410-260 chr6 49313674 49314058 + 2 NA Intergenic L1MA8|LINE|L1 149387 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 330-120 chr12 37942910 37943172 + 2 NA Intergenic ALR/Alpha|Satellite|centr -373733 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 310-330 chr3 83726650 83726847 + 2 NA Intergenic Intergenic 1142827 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 445-104 chr18 71658294 71658668 + 2 NA Intergenic L2a|LINE|L2 -79525 NR_038326 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 417-156 chr2 172170816 172171158 + 2 NA Intergenic Intergenic 67981 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 260-163 chr16 68775968 68776180 + 2 NA intron (NM_001317185, intron 2 of 15) AluSz6|SINE|Alu 38782 NM_004360 999 Hs.461086 NM_004360 ENSG00000039068 CDH1 Arc-1|BCDS1|CD324|CDHE|ECAD|LCAM|UVO cadherin 1 protein-coding 390-349 chr7 33728043 33728389 + 2 NA Intergenic MIRb|SINE|MIR -176699 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 272-139 chr16 27116399 27116599 + 2 NA Intergenic L1MA2|LINE|L1 49572 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 241-302 chr5 54812275 54812436 + 2 NA Intergenic Intergenic -68097 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 512-151 chr21 19558430 19558789 + 2 NA Intergenic L1MEc|LINE|L1 341146 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 242-405 chr8 118230463 118230647 + 2 NA intron (NM_001101676, intron 4 of 4) L2b|LINE|L2 -118736 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 350-153 chr15 36582881 36583183 + 2 NA intron (NM_001321758, intron 1 of 8) L1ME3G|LINE|L1 3406 NM_001321761 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 297-493 chr8 129348189 129348350 + 2 NA Intergenic L1MEf|LINE|L1 -107029 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 304-364 chr3 185310594 185310772 + 2 NA intron (NM_001242317, intron 2 of 12) L1MCc|LINE|L1 27722 NM_001242317 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 311-375 chr4 58375861 58376042 + 2 NA Intergenic L1PA17|LINE|L1 160377 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 234-333 chr6 5946283 5946445 + 2 NA Intergenic Intergenic 57680 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 315-333 chr4 36663971 36664167 + 2 NA Intergenic MIR|SINE|MIR -22169 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 506-256 chr6 146757141 146757642 + 2 NA intron (NM_024694, intron 27 of 35) intron (NM_024694, intron 27 of 35) 46433 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 342-493 chr7 83629303 83629532 + 2 NA intron (NM_012431, intron 1 of 16) L1PA7|LINE|L1 12014 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 636-147 chr8 112382648 112383125 + 2 NA intron (NM_001363185, intron 33 of 66) AluSx|SINE|Alu -260607 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 315-230 chr2 36187078 36187256 + 2 NA Intergenic MIR|SINE|MIR 168403 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 268-111 chr14 38622935 38623186 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -259536 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 304-44 chr10 25590391 25590578 + 2 NA intron (NM_020752, intron 8 of 10) intron (NM_020752, intron 8 of 10) -61228 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 229-398 chr8 121065373 121065598 + 2 NA Intergenic MER58D|DNA|hAT-Charlie -253439 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 341-402 chr4 149425719 149425985 + 2 NA intron (NM_001363507, intron 13 of 13) intron (NM_001363507, intron 13 of 13) 271557 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 426-94 chr16 59843200 59843416 + 2 NA Intergenic L1M4b|LINE|L1 -12045 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 558-31 chr11 42413422 42413923 + 2 NA Intergenic MIRb|SINE|MIR -159982 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 209-111 chr15 78875218 78875404 + 2 NA intron (NM_001265604, intron 1 of 11) intron (NM_001265604, intron 1 of 11) 2322 NM_001265604 10933 Hs.374503 NM_006791 ENSG00000185787 MORF4L1 Eaf3|FWP006|HsT17725|MEAF3|MORFRG15|MRG15|S863-6 mortality factor 4 like 1 protein-coding 267-79 chr12 16049849 16050076 + 2 NA Intergenic MER4D|LTR|ERV1 138630 NM_001300779 51071 Hs.39429 NM_015954 ENSG00000023697 DERA CGI-26|DEOC deoxyribose-phosphate aldolase protein-coding 516-15 chr1 223484469 223484773 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy 91206 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 335-112 chr12 1195779 1196107 + 2 NA intron (NM_001301248, intron 11 of 18) intron (NM_001301248, intron 11 of 18) 168195 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 307-195 chr18 2706603 2706832 + 2 NA intron (NM_015295, intron 15 of 47) intron (NM_015295, intron 15 of 47) 50830 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 175-139 chr6 3254761 3254890 + 2 NA Intergenic LTR12C|LTR|ERV1 -4122 NM_001128592 389362 Hs.207069 NM_001128591 ENSG00000180822 PSMG4 C6orf86|PAC4|bA506K6.2 proteasome assembly chaperone 4 protein-coding 252-139 chr16 9404607 9404796 + 2 NA non-coding (NR_135195, exon 3 of 3) non-coding (NR_135195, exon 3 of 3) 40284 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 316-433 chr5 28444541 28444809 + 2 NA Intergenic Intergenic -157010 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 312-210 chr18 70503466 70503768 + 2 NA Intergenic Intergenic -119026 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 311-275 chr2 156616611 156616802 + 2 NA Intergenic Intergenic 180327 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 265-397 chr8 116565073 116565270 + 2 NA Intergenic L1PA8|LINE|L1 -86929 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 368-358 chr5 39999368 39999704 + 2 NA Intergenic Intergenic -52755 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 208 chr1 5356899 5357092 + 2 NA Intergenic L1MD3|LINE|L1 505746 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 308-284 chr3 6595682 6595923 + 2 NA Intergenic L1MA7|LINE|L1 209647 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 410-255 chr5 150831447 150831729 + 2 NA Intergenic MamRep1527|LTR|LTR -14933 NM_001346557 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 312-516 chr8 86900653 86900825 + 2 NA intron (NM_173538, intron 2 of 10) intron (NM_173538, intron 2 of 10) 34324 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 266-411 chr8 53556036 53556251 + 2 NA Intergenic L2a|LINE|L2 -32178 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 292-406 chr7 40601997 40602265 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 377808 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 1075-9 chr3 38878995 38879564 + 2 NA intron (NM_014139, intron 19 of 25) MIR|SINE|MIR 71282 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 275-305 chr5 171067915 171068113 + 2 NA intron (NM_022897, intron 14 of 27) L1PA3|LINE|L1 205996 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 302-370 chr6 28470342 28470551 + 2 NA Intergenic L1M8|LINE|L1 -26955 NM_001012455 222696 Hs.721841 NM_001012455 ENSG00000187987 ZSCAN23 ZNF390|ZNF453|dJ29K1.3|dJ29K1.3.1 zinc finger and SCAN domain containing 23 protein-coding 409-122 chr18 76438505 76438718 + 2 NA intron (NM_014643, intron 3 of 6) intron (NM_014643, intron 3 of 6) -53041 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 204-62 chr12 90141573 90141738 + 2 NA Intergenic L1MEb|LINE|L1 -151663 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 542-96 chr2 65475463 65475944 + 2 NA Intergenic MIR|SINE|MIR -43104 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 350-147 chr14 96229472 96229798 + 2 NA intron (NM_000623, intron 1 of 2) MLT2C1|LTR|ERVL 24837 NM_000623 624 Hs.654542 NM_000623 ENSG00000168398 BDKRB2 B2R|BK-2|BK2|BKR2|BRB2 bradykinin receptor B2 protein-coding 250-434 chr8 101879404 101879618 + 2 NA intron (NM_001040628, intron 4 of 7) LTR12C|LTR|ERV1 -88542 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 130-36 chr2 41431512 41431609 + 2 NA Intergenic Charlie13a|DNA|hAT-Charlie -445995 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 309-207 chr17 66917215 66917424 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -47388 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 372-98 chr12 6309834 6310134 + 2 NA promoter-TSS (NM_018173) promoter-TSS (NM_018173) -452 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 313-565 chrX 21023384 21023624 + 2 NA Intergenic L1M1|LINE|L1 -350914 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 277-36 chr10 5341162 5341423 + 2 NA Intergenic L2|LINE|L2 -23674 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 391-386 chrX 47448791 47449064 + 2 NA exon (NM_007130, exon 5 of 5) exon (NM_007130, exon 5 of 5) 18742 NM_001324156 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 583-75 chr18 61794055 61794448 + 2 NA Intergenic Intergenic 46075 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 470-292 chr9 109911817 109912183 + 2 NA intron (NM_053016, intron 3 of 6) intron (NM_053016, intron 3 of 6) 131802 NM_007203 445815 Hs.591908 NM_007203 ENSG00000157654 PALM2-AKAP2 AKAP-2|AKAP-KL|AKAP2|AKAPKL|MISP2|PALM2|PRKA2 PALM2-AKAP2 fusion protein-coding 271-90 chr12 25679544 25679725 + 2 NA Intergenic Intergenic -31056 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 253-432 chr9 80858844 80859073 + 2 NA Intergenic Intergenic 830577 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 176-46 chr18 552384 552519 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -27929 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 223-39 chr10 80061325 80061534 + 2 NA intron (NR_027432, intron 1 of 3) intron (NR_027432, intron 1 of 3) -17217 NM_001270371 80195 Hs.169982 NM_025125 ENSG00000133678 TMEM254 C10orf57|bA369J21.6 transmembrane protein 254 protein-coding 307-45 chr10 29299957 29300237 + 2 NA intron (NM_032517, intron 3 of 4) intron (NM_032517, intron 3 of 4) 11027 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 315-33 chr1 211858889 211859092 + 2 NA Intergenic Intergenic 28029 NR_135820 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 349-157 chr14 51905064 51905290 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 13394 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 375-199 chr2 29740355 29740579 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 181119 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 964-34 chr9 96738371 96738983 + 2 NA Intergenic Intergenic 12856 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 667-129 chr9 111753363 111753926 + 2 NA intron (NM_173521, intron 6 of 25) L1M3|LINE|L1 5892 NM_001080551 158401 Hs.428209 NM_173521 ENSG00000165181 SHOC1 C9orf84|ZIP2|ZIP2H shortage in chiasmata 1 protein-coding 285-438 chr8 134124932 134125120 + 2 NA Intergenic Intergenic 238530 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 287-398 chr8 71338676 71338886 + 2 NA intron (NM_001370336, intron 4 of 17) intron (NM_001370336, intron 4 of 17) 17925 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 238-87 chr13 34678909 34679081 + 2 NA Intergenic MIRb|SINE|MIR -38310 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 153-42 chr17 43869297 43869376 + 2 NA Intergenic AluJb|SINE|Alu 22160 NM_145273 146894 Hs.147313 NM_145273 ENSG00000161649 CD300LG CLM-9|CLM9|NEPMUCIN|TREM-4|TREM4 CD300 molecule like family member g protein-coding 418-21 chr10 8945723 8946035 + 2 NA Intergenic Intergenic 47890 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 200-57 chr12 66235899 66236020 + 2 NA intron (NM_007199, intron 8 of 11) intron (NM_007199, intron 8 of 11) -15123 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 251-368 chr7 46280390 46280569 + 2 NA Intergenic L1MCa|LINE|L1 -359207 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 327-308 chr21 28629133 28629359 + 2 NA Intergenic Intergenic 89928 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 228-190 chr20 24072720 24072887 + 2 NA Intergenic Intergenic -84024 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 531-90 chr18 36393545 36393928 + 2 NA intron (NM_001281740, intron 3 of 28) intron (NM_001281740, intron 3 of 28) 96023 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 517-200 chr4 96607115 96607573 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 296641 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 486-173 chr20 47084988 47085389 + 2 NA intron (NM_172110, intron 7 of 13) L1ME1|LINE|L1 -81779 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 173-90 chr3 84852029 84852167 + 2 NA intron (NR_033860, intron 8 of 20) intron (NR_033860, intron 8 of 20) 17477 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 213-107 chr16 47973398 47973547 + 2 NA Intergenic MIRc|SINE|MIR 7783 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 132-22 chr14 48470893 48470971 + 2 NA Intergenic Intergenic -675918 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 355-477 chr7 104377866 104378133 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 49343 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 322-249 chr2 76369406 76369687 + 2 NA Intergenic Intergenic -616419 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 160-108 chr7 34023315 34023452 + 2 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 117844 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 386-316 chr6 169463367 169463696 + 2 NA intron (NR_146875, intron 19 of 20) L1MB3|LINE|L1 -209417 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 507-104 chr18 13467873 13468181 + 2 NA intron (NM_181482, intron 4 of 5) L1MB4|LINE|L1 8080 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 522-41 chr11 29698433 29698783 + 2 NA Intergenic L1PB1|LINE|L1 79806 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 201-242 chr8 110717159 110717338 + 2 NA Intergenic Intergenic 310185 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 230-148 chr17 49048069 49048257 + 2 NA intron (NM_001160423, intron 12 of 12) intron (NM_001160423, intron 12 of 12) 50778 NM_006546 10642 Hs.144936 NM_006546 ENSG00000159217 IGF2BP1 CRD-BP|CRDBP|IMP-1|IMP1|VICKZ1|ZBP1 insulin like growth factor 2 mRNA binding protein 1 protein-coding 202-56 chr12 129170396 129170500 + 2 NA intron (NM_133448, intron 5 of 8) Tigger1|DNA|TcMar-Tigger -38153 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 475-53 chr12 15377199 15377514 + 2 NA intron (NM_030667, intron 1 of 26) L1MB7|LINE|L1 54848 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 294-456 chr8 33298058 33298277 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy 174979 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 359-256 chr2 180879412 180879681 + 2 NA intron (NR_104324, intron 4 of 4) L1M4a1|LINE|L1 -100839 NM_001278555 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 222 chr1 17324615 17324756 + 2 NA intron (NM_012387, intron 1 of 15).2 L1MEd|LINE|L1 16488 NM_012387 23569 Hs.522969 NM_012387 ENSG00000159339 PADI4 PAD|PAD4|PADI5|PDI4|PDI5 peptidyl arginine deiminase 4 protein-coding 485-29 chr10 42305184 42305543 + 2 NA Intergenic Intergenic 62682 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 248-212 chr2 219783279 219783463 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner 121518 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 290-6 chr1 63206897 63207052 + 2 NA intron (NR_038252, intron 4 of 11) intron (NR_038252, intron 4 of 11) 110283 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 404-316 chr8 87803855 87804208 + 2 NA Intergenic L1MB3|LINE|L1 69984 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 441-26 chr10 65965522 65965794 + 2 NA intron (NM_001127384, intron 17 of 17) AluSz|SINE|Alu 394233 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 219-90 chr13 79777642 79777797 + 2 NA Intergenic Intergenic -26667 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 301-417 chr7 31245118 31245385 + 2 NA Intergenic L2c|LINE|L2 95475 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 235-361 chr8 105113495 105113653 + 2 NA Intergenic Intergenic -204864 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 662-79 chr5 141166474 141166876 + 2 NA Intergenic Intergenic -5969 NM_018940 56129 Hs.203830 NM_018940 ENSG00000113212 PCDHB7 PCDH-BETA7 protocadherin beta 7 protein-coding 332-267 chr2 134835377 134835667 + 2 NA Intergenic L1MEd|LINE|L1 -3094 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 281-269 chr21 26953743 26953971 + 2 NA promoter-TSS (NR_039916) promoter-TSS (NR_039916) -104 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 302-105 chr12 46639707 46639879 + 2 NA intron (NR_125377, intron 3 of 3) L1PA14|LINE|L1 186204 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 275-206 chr2 138226303 138226485 + 2 NA Intergenic L1ME2|LINE|L1 124510 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 215-189 chr3 55682046 55682226 + 2 NA intron (NR_132749, intron 16 of 17) intron (NR_132749, intron 16 of 17) -22667 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 224-310 chr8 9596361 9596563 + 2 NA intron (NM_003747, intron 2 of 26) intron (NM_003747, intron 2 of 26) 40550 NM_003747 8658 Hs.370267 NM_003747 ENSG00000173273 TNKS ARTD5|PARP-5a|PARP5A|PARPL|TIN1|TINF1|TNKS1|pART5 tankyrase protein-coding 485-18 chr1 203109060 203109405 + 2 NA Intergenic L1PA17|LINE|L1 -18494 NM_000674 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 497-141 chr2 183222014 183222419 + 2 NA Intergenic Intergenic 97773 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 738-77 chrX 96159186 96159677 + 2 NA Intergenic L1M5|LINE|L1 178471 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 416-110 chr13 104115812 104116141 + 2 NA Intergenic L1ME2|LINE|L1 690776 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 595-11 chr1 188106946 188107496 + 2 NA Intergenic L2|LINE|L2 663593 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 523-6 chr1 85015260 85015596 + 2 NA Intergenic AluJb|SINE|Alu -18315 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 243-48 chr10 71006762 71006976 + 2 NA Intergenic Intergenic 67816 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 205-282 chr8 119900929 119901108 + 2 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 27296 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 512-230 chr5 153017509 153017864 + 2 NA Intergenic L1M4c|LINE|L1 -45337 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 284-118 chr14 63285981 63286216 + 2 NA intron (NM_020663, intron 4 of 4) intron (NM_020663, intron 4 of 4) 32837 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 329-306 chr2 204013967 204014254 + 2 NA Intergenic Intergenic 77362 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 331-175 chr15 88966113 88966355 + 2 NA Intergenic L1MA5A|LINE|L1 -52855 NM_001114614 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 412-147 chr2 16160285 16160568 + 2 NA Intergenic AluJr|SINE|Alu 109999 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 307-408 chr5 165953134 165953352 + 2 NA Intergenic L1MEd|LINE|L1 973127 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 426-277 chr7 95137602 95137936 + 2 NA intron (NM_017650, intron 4 of 15) L1M5|LINE|L1 186763 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 439-315 chrX 121686443 121686765 + 2 NA Intergenic L1MB7|LINE|L1 315632 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 327-322 chr3 25178166 25178345 + 2 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -162547 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 310-250 chr2 104579200 104579371 + 2 NA Intergenic Intergenic -68776 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 348-501 chr7 113257344 113257592 + 2 NA Intergenic L1M4a1|LINE|L1 -138886 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 447-47 chr11 115007752 115008115 + 2 NA Intergenic L2a|LINE|L2 -325644 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 332-594 chrX 103108309 103108526 + 2 NA Intergenic LTR54|LTR|ERV1 -15274 NM_022052 56000 Hs.60386 NM_022052 ENSG00000147206 NXF3 - nuclear RNA export factor 3 protein-coding 259-246 chr3 40876599 40876808 + 2 NA Intergenic Intergenic -322802 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 516-248 chr8 62969587 62969990 + 2 NA intron (NR_130764, intron 5 of 6) intron (NR_130764, intron 5 of 6) -8073 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 330-355 chr3 103665616 103665829 + 2 NA Intergenic Intergenic -141606 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 506-142 chr2 72063417 72063717 + 2 NA Intergenic L1MD|LINE|L1 84295 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 484-255 chr7 135791585 135791977 + 2 NA Intergenic Intergenic -42968 NM_205855 389558 Hs.55200 NM_205855 ENSG00000189320 FAM180A UNQ1940 family with sequence similarity 180 member A protein-coding 251-55 chr11 92630515 92630704 + 2 NA intron (NM_001008781, intron 2 of 24) L2a|LINE|L2 278513 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 560-107 chr22 25024130 25024476 + 2 NA Intergenic Intergenic -3671 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 364-390 chr6 123084886 123085220 + 2 NA Intergenic Intergenic 88818 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 290-356 chr5 106150175 106150419 + 2 NA Intergenic L2c|LINE|L2 860717 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 645-63 chr2 174031741 174032206 + 2 NA Intergenic Intergenic 6693 NR_136175 100128905 Hs.456944 NR_136175 ENSG00000260868 LINC01960 - long intergenic non-protein coding RNA 1960 ncRNA 311-359 chr3 185915260 185915516 + 2 NA 3' UTR (NM_001243879, exon 8 of 8) 3' UTR (NM_001243879, exon 8 of 8) 22626 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 338-216 chr17 66840537 66840867 + 2 NA intron (NM_145811, intron 1 of 5) intron (NM_145811, intron 1 of 5) 5585 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 274-14 chr1 115720906 115721086 + 2 NA intron (NM_001232, intron 7 of 10) L1ME4a|LINE|L1 47809 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 200-211 chr5 40892504 40892654 + 2 NA Intergenic L1M4|LINE|L1 -16918 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 420-173 chr22 30847744 30848110 + 2 NA intron (NM_001282741, intron 1 of 12) L1MB8|LINE|L1 25411 NM_001282741 23762 Hs.517546 NM_030758 ENSG00000184792 OSBP2 HLM|ORP-4|ORP4|OSBPL1|OSBPL4 oxysterol binding protein 2 protein-coding 273-37 chr10 6898830 6898990 + 2 NA Intergenic L1ME4a|LINE|L1 119312 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 206-171 chr3 172826554 172826690 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 75620 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 476-242 chr6 124333222 124333692 + 2 NA intron (NM_001040214, intron 2 of 6) AluSx1|SINE|Alu 50452 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 347-201 chr2 31445704 31445947 + 2 NA Intergenic Intergenic -31083 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 334-252 chr2 35431333 35431653 + 2 NA Intergenic Intergenic -39912 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 437-226 chr5 87634376 87634675 + 2 NA Intergenic L1ME3A|LINE|L1 -27517 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 127-51 chr2 183804608 183804725 + 2 NA Intergenic L1MD|LINE|L1 -574309 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 310-264 chr2 148602956 148603173 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -41687 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 296-404 chr6 77041219 77041412 + 2 NA Intergenic Intergenic 422707 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 313-347 chr3 82140490 82140698 + 2 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 154452 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 207-118 chr19 28296013 28296144 + 2 NA Intergenic L1MA3|LINE|L1 -310610 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 183-121 chr5 140319422 140319552 + 2 NA Intergenic L2a|LINE|L2 -16386 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 339-49 chr10 10252180 10252434 + 2 NA Intergenic AluSq2|SINE|Alu 193585 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 268-321 chr5 116029779 116029928 + 2 NA Intergenic L1MC4|LINE|L1 -21613 NM_001195581 644100 Hs.98288 NM_001195581 ENSG00000268223 ARL14EPL - ADP ribosylation factor like GTPase 14 effector protein like protein-coding 573-55 chr12 104611603 104612149 + 2 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 20243 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 333-99 chr11 112577824 112578141 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -22180 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 127-36 chr17 5085962 5086052 + 2 NA intron (NM_153018, intron 1 of 1) intron (NM_153018, intron 1 of 1) 7540 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 270-279 chr4 126586286 126586549 + 2 NA Intergenic L1PA15-16|LINE|L1 -1046540 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 383-137 chr16 5458909 5459160 + 2 NA Intergenic Intergenic 157216 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 352-474 chr6 158740433 158740707 + 2 NA intron (NM_001242394, intron 11 of 17) intron (NM_001242394, intron 11 of 17) 24183 NR_037482 100500851 NR_037482 ENSG00000265558 MIR3918 mir-3918 microRNA 3918 ncRNA 262-112 chr13 96645416 96645575 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 218266 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 383-303 chr5 20096255 20096616 + 2 NA intron (NM_001291956, intron 2 of 14) L1MEg|LINE|L1 -108235 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 379-353 chr8 117660229 117660433 + 2 NA Intergenic Intergenic 139618 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 306-290 chr21 24243176 24243349 + 2 NA Intergenic Intergenic 78115 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 316-100 chr11 56155344 56155526 + 2 NA Intergenic L1PB1|LINE|L1 4882 NM_001004058 219453 Hs.553626 NM_001004058 ENSG00000181752 OR8K5 OR11-174 olfactory receptor family 8 subfamily K member 5 protein-coding 171-97 chr4 175053032 175053148 + 2 NA Intergenic L1MC5|LINE|L1 134732 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 297-400 chr6 48696260 48696533 + 2 NA Intergenic L1P4a|LINE|L1 -627707 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 366-286 chr3 143583627 143583841 + 2 NA intron (NM_173653, intron 6 of 15) MIR|SINE|MIR 241488 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 333-320 chr21 27281776 27281973 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -314786 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 353-324 chr3 64866964 64867173 + 2 NA intron (NR_038264, intron 3 of 5) MER34C|LTR|ERV1 -179068 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 572-185 chr8 136346564 136347010 + 2 NA Intergenic Intergenic -184011 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 189-2 chr1 94266168 94266299 + 2 NA Intergenic Intergenic -18487 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 269-99 chr12 115582476 115582719 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 566057 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 444-198 chr5 85850449 85850763 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -431838 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 562-23 chr10 74244175 74244575 + 2 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 67612 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 236-184 chr2 130929395 130929607 + 2 NA intron (NM_001367493, intron 2 of 13) intron (NM_001367493, intron 2 of 13) 92587 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 331-230 chr18 80019645 80019946 + 2 NA intron (NM_001305564, intron 1 of 2) HUERS-P3-int|LTR|ERV1 14141 NM_001305564 10907 Hs.465498 NM_006701 ENSG00000141759 TXNL4A BMKS|DIB1|DIM1|SNRNP15|TXNL4|U5-15kD thioredoxin like 4A protein-coding 372-27 chr1 182555574 182555891 + 2 NA intron (NM_001366934, intron 21 of 22) intron (NM_001366934, intron 21 of 22) 33524 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 225-282 chr5 79687696 79687882 + 2 NA 3' UTR (NM_173797, exon 16 of 16) 3' UTR (NM_173797, exon 16 of 16) -2047 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 473-122 chr19 58225074 58225412 + 2 NA Intergenic Intergenic -3438 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 402-2 chr1 14421905 14422284 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -2121 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 259-413 chr8 123186140 123186387 + 2 NA intron (NM_001288587, intron 1 of 3) (CA)n|Simple_repeat|Simple_repeat 3598 NM_001321630 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 304-324 chr3 11449152 11449357 + 2 NA intron (NM_001349238, intron 17 of 17) FRAM|SINE|Alu 119544 NM_001128221 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 308-124 chr13 30942343 30942588 + 2 NA intron (NM_001353391, intron 2 of 5) L1PB3|LINE|L1 9809 NM_001353388 122046 Hs.124463 NM_152325 ENSG00000175664 TEX26 C13orf26 testis expressed 26 protein-coding 307-28 chr1 187623395 187623643 + 2 NA Intergenic Intergenic 179891 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 381-398 chr8 138851487 138851849 + 2 NA intron (NM_152888, intron 3 of 64) intron (NM_152888, intron 3 of 64) 62373 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 682 chr1 37221363 37221861 + 2 NA Intergenic L1MD2|LINE|L1 60049 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 280-46 chr10 39114701 39114924 + 2 NA Intergenic ALR/Alpha|Satellite|centr 418216 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 309-219 chr18 68270913 68271139 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 444082 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 491-149 chr21 16342146 16342624 + 2 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -57617 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 244-354 chr8 15534167 15534374 + 2 NA Intergenic Intergenic -5817 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 405-199 chr3 59467120 59467501 + 2 NA Intergenic Intergenic 191187 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 440-117 chr2 60227304 60227682 + 2 NA Intergenic Intergenic 155543 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 461-262 chr8 72374299 72374609 + 2 NA Intergenic L1PA15-16|LINE|L1 -122820 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 241-122 chr15 24625648 24625837 + 2 NA Intergenic MER54A|LTR|ERVL -49652 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 294-279 chr22 35994132 35994408 + 2 NA intron (NM_001082578, intron 1 of 13) Charlie5|DNA|hAT-Charlie -32640 NM_001349989 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 156-63 chr20 55330703 55330817 + 2 NA Intergenic L1MC4|LINE|L1 -92283 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 326-413 chr5 64287742 64288037 + 2 NA intron (NM_001113561, intron 5 of 7) L1PA10|LINE|L1 122046 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 170-9 chr1 179053971 179054094 + 2 NA intron (NM_001324310, intron 3 of 7) intron (NM_001324310, intron 3 of 7) 27908 NM_001324311 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 595-149 chr7 6056740 6057259 + 2 NA intron (NM_001134335, intron 1 of 14) intron (NM_001134335, intron 1 of 14) 2176 NM_014413 27102 Hs.520205 NM_014413 ENSG00000086232 EIF2AK1 HCR|HRI eukaryotic translation initiation factor 2 alpha kinase 1 protein-coding 206-18 chr1 176492329 176492526 + 2 NA intron (NM_021936, intron 1 of 4) MIR|SINE|MIR 29252 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 306-47 chr10 15407640 15407817 + 2 NA Intergenic AluSg4|SINE|Alu -36439 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 236-91 chr12 81167445 81167639 + 2 NA intron (NM_024560, intron 7 of 15) MLT1A1|LTR|ERVL-MaLR 9154 NR_039848 100616133 NR_039848 ENSG00000265227 MIR4699 - microRNA 4699 ncRNA 338-98 chr11 48940166 48940437 + 2 NA Intergenic ALR/Alpha|Satellite|centr -91299 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 360-182 chr18 51566049 51566387 + 2 NA Intergenic Intergenic 174176 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 284-292 chr4 97690938 97691129 + 2 NA intron (NM_174952, intron 10 of 10) L1PBa|LINE|L1 324107 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 311-382 chr4 80750294 80750535 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -280294 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 921 chr1 184302031 184302657 + 2 NA Intergenic Intergenic -84685 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 223-107 chr16 60415284 60415462 + 2 NA Intergenic Intergenic -55580 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 372-264 chr2 170243674 170243905 + 2 NA intron (NM_001083615, intron 7 of 33) intron (NM_001083615, intron 7 of 33) 65642 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 181-171 chr9 93798744 93798871 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -20550 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 366-290 chr3 173077787 173078134 + 2 NA intron (NM_031955, intron 2 of 10) intron (NM_031955, intron 2 of 10) 63275 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 301-300 chr3 191931699 191931955 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -306803 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 313-162 chr15 34003261 34003469 + 2 NA intron (NM_020371, intron 1 of 5) intron (NM_020371, intron 1 of 5) 34868 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 362-369 chr5 179359089 179359298 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -13732 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 322-563 chr9 35376998 35377298 + 2 NA intron (NM_006377, intron 14 of 38) intron (NM_006377, intron 14 of 38) -29607 NR_003581 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 539-183 chr6 139785298 139785718 + 2 NA intron (NR_038399, intron 1 of 2) L1PA15|LINE|L1 14435 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 389-2 chr1 33626275 33626527 + 2 NA intron (NM_052896, intron 33 of 69) intron (NM_052896, intron 33 of 69) 153756 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 219-230 chr3 64868941 64869137 + 2 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -181039 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 346-387 chr5 45750746 45751047 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -54516 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 472-198 chr22 27428307 27428570 + 2 NA Intergenic L2b|LINE|L2 117787 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 385-195 chr2 185941632 185941861 + 2 NA Intergenic L1MA4A|LINE|L1 -141595 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 386-66 chr12 2137102 2137333 + 2 NA intron (NM_199460, intron 3 of 49).2 MIRb|SINE|MIR 83932 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 196-280 chrX 129004527 129004655 + 2 NA Intergenic Intergenic 518899 NM_001282875 6594 Hs.152292 NM_003069 ENSG00000102038 SMARCA1 ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SNF2LT|SWI|SWI2|hSNF2L SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 protein-coding 287-404 chr8 84776646 84776803 + 2 NA intron (NM_001354322, intron 3 of 6) intron (NM_001354322, intron 3 of 6) 70797 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 366-108 chr12 76006163 76006462 + 2 NA Intergenic Intergenic 25464 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 196-35 chr10 90851121 90851272 + 2 NA intron (NM_019860, intron 1 of 2) L1ME2|LINE|L1 6843 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 368-321 chr4 35559553 35559794 + 2 NA Intergenic LTR27E|LTR|ERV1 684266 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 771-16 chr11 91541298 91541805 + 2 NA Intergenic L1M3b|LINE|L1 -672349 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 332-572 chr9 99553740 99553973 + 2 NA Intergenic Intergenic -178599 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 189-146 chr4 63539703 63539858 + 2 NA Intergenic LTR49-int|LTR|ERV1 869670 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 185-26 chr10 80345670 80345806 + 2 NA intron (NM_001270042, intron 1 of 3) L1MA10|LINE|L1 993 NR_070309 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 210-97 chr17 44493377 44493502 + 2 NA intron (NM_001002909, intron 1 of 7) intron (NM_001002909, intron 1 of 7) 9967 NM_001002909 23131 Hs.463129 NM_001002909 ENSG00000186566 GPATCH8 GPATC8|KIAA0553 G-patch domain containing 8 protein-coding 385-68 chr12 79957465 79957785 + 2 NA Intergenic MIRb|SINE|MIR -22170 NM_001244990 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 453-211 chr5 113500813 113501219 + 2 NA Intergenic L1M1|LINE|L1 -12563 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 215-54 chr11 89168490 89168672 + 2 NA Intergenic LTR33|LTR|ERVL -9294 NM_000372 7299 Hs.503555 NM_000372 ENSG00000077498 TYR ATN|CMM8|OCA1|OCA1A|OCAIA|SHEP3 tyrosinase protein-coding 386-248 chr3 181165688 181165967 + 2 NA intron (NR_075091, intron 2 of 7) MLT1A0|LTR|ERVL-MaLR -9317 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 334-309 chr20 21727729 21727901 + 2 NA Intergenic L1M5|LINE|L1 22151 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 459-292 chr8 36720128 36720495 + 2 NA Intergenic L1MC3|LINE|L1 -64063 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 565-194 chr9 88168390 88168789 + 2 NA Intergenic L1M5|LINE|L1 -30108 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 226-346 chr8 89474574 89474758 + 2 NA Intergenic Intergenic 283045 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 523-15 chr1 196857081 196857437 + 2 NA Intergenic Intergenic -30793 NM_001201550 10877 Hs.710100 NM_006684 ENSG00000134365 CFHR4 CFHL4|FHR-4|FHR4 complement factor H related 4 protein-coding 248-178 chr2 45904192 45904381 + 2 NA intron (NM_005400, intron 2 of 14) intron (NM_005400, intron 2 of 14) 252611 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 774-70 chr5 65342960 65343643 + 2 NA intron (NR_135689, intron 7 of 25) L1ME4c|LINE|L1 138619 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 235-50 chr10 89188537 89188735 + 2 NA Intergenic L1MD|LINE|L1 18681 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 337-488 chr6 66153799 66154057 + 2 NA Intergenic L1MA3|LINE|L1 366049 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 453-73 chr14 86889609 86890047 + 2 NA Intergenic L2a|LINE|L2 -15950 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 304-428 chr5 111610662 111610901 + 2 NA intron (NR_040093, intron 1 of 6) L1PA16|LINE|L1 -98184 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 378-100 chr12 19761600 19761828 + 2 NA Intergenic Intergenic -252971 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 449-117 chr2 43976413 43976803 + 2 NA intron (NM_133259, intron 5 of 37) intron (NM_133259, intron 5 of 37) 19381 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 248-344 chr6 47648101 47648301 + 2 NA Intergenic MER110|LTR|ERV1 -8271 NM_153839 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 377-131 chr15 26383700 26383924 + 2 NA Intergenic Intergenic 245278 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 310-62 chr10 115856753 115857019 + 2 NA intron (NM_207303, intron 28 of 28) MER1B|DNA|hAT-Charlie 337903 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 343-573 chr9 12816498 12816698 + 2 NA intron (NM_203403, intron 1 of 1) intron (NM_203403, intron 1 of 1) -2209 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 337-132 chr13 46995443 46995769 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -98530 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 330-477 chr7 7281890 7282120 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 26851 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 276-479 chr9 73986197 73986375 + 2 NA Intergenic L1PA14|LINE|L1 -385245 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 295-495 chr9 76723305 76723519 + 2 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) -30997 NM_001308049 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 411-234 chr5 107102346 107102654 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -91486 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 280-227 chr2 240171204 240171395 + 2 NA Intergenic Intergenic -30641 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 359-501 chr9 1609931 1610137 + 2 NA Intergenic L1MA3|LINE|L1 -405313 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 546-120 chr2 194975297 194975699 + 2 NA Intergenic Intergenic 244903 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 270-31 chr10 37732553 37732815 + 2 NA Intergenic Intergenic 62491 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 456-196 chr3 24627357 24627753 + 2 NA Intergenic Intergenic -131847 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 292-78 chr11 78381860 78382061 + 2 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 35860 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 662-11 chr10 62344689 62345050 + 2 NA intron (NR_104162, intron 3 of 3) MER41B|LTR|ERV1 -29288 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 136-45 chr2 181958916 181959007 + 2 NA intron (NR_048567, intron 1 of 4) L1ME3A|LINE|L1 4720 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 214-66 chr11 83995091 83995222 + 2 NA intron (NM_001142699, intron 11 of 27) L2c|LINE|L2 278124 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 309-583 chrX 64379047 64379276 + 2 NA intron (NM_017677, intron 1 of 13) L1MC|LINE|L1 16291 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 920-17 chr2 119147354 119147944 + 2 NA Intergenic MIRb|SINE|MIR 11102 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 191-10 chr1 104572066 104572240 + 2 NA Intergenic Intergenic 499130 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 316-598 chrX 33712709 33712887 + 2 NA Intergenic L1MA10|LINE|L1 -373410 NM_000109 1756 Hs.495912 NM_000109 ENSG00000198947 DMD BMD|CMD3B|DXS142|DXS164|DXS206|DXS230|DXS239|DXS268|DXS269|DXS270|DXS272|MRX85 dystrophin protein-coding 534-35 chr10 83385358 83385765 + 2 NA Intergenic L1MA2|LINE|L1 291528 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 185-14 chr1 188275750 188275888 + 2 NA Intergenic Intergenic 832191 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 291-419 chr7 69574970 69575213 + 2 NA Intergenic Intergenic 22533 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 486-105 chr16 26527256 26527642 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 502212 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 572-157 chr6 145082086 145082431 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 604619 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 258-46 chr10 31259474 31259712 + 2 NA intron (NR_134478, intron 1 of 2) intron (NR_134478, intron 1 of 2) -58824 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 222-231 chr3 55436542 55436756 + 2 NA Intergenic L1ME4a|LINE|L1 44749 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 532-182 chr4 42189749 42190180 + 2 NA Intergenic L2a|LINE|L2 -37309 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 319-469 chr6 106810930 106811182 + 2 NA Intergenic L1PA13|LINE|L1 -23515 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 235-197 chr2 223453837 223454006 + 2 NA Intergenic Intergenic 148440 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 309-484 chr6 93932668 93932913 + 2 NA Intergenic Intergenic 214487 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 411-84 chr14 38568385 38568756 + 2 NA Intergenic L2c|LINE|L2 -312477 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 167-21 chr10 80202457 80202591 + 2 NA intron (NM_001278408, intron 1 of 16) intron (NM_001278408, intron 1 of 16) 1967 NM_001278408 311 Hs.530291 NM_001157 ENSG00000122359 ANXA11 ALS23|ANX11|CAP-50|CAP50 annexin A11 protein-coding 177-10 chr1 163319875 163320011 + 2 NA intron (NR_045630, intron 1 of 3) intron (NR_045630, intron 1 of 3) 1848 NM_001254748 8490 Hs.24950 NM_003617 ENSG00000143248 RGS5 MST092|MST106|MST129|MSTP032|MSTP092|MSTP106|MSTP129 regulator of G protein signaling 5 protein-coding 372-270 chr2 204685975 204686219 + 2 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 140622 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 239-111 chr14 75261623 75261814 + 2 NA Intergenic AluSx|SINE|Alu -17110 NM_005252 2353 Hs.25647 NM_005252 ENSG00000170345 FOS AP-1|C-FOS|p55 Fos proto-oncogene, AP-1 transcription factor subunit protein-coding 586-77 chr2 99694163 99694593 + 2 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -204361 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 304-491 chr7 55561852 55562029 + 2 NA intron (NM_030796, intron 1 of 4) intron (NM_030796, intron 1 of 4) -8053 NM_001321248 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 183-153 chr8 26183566 26183698 + 2 NA Intergenic Intergenic -107876 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 322-292 chr20 40730763 40731012 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -16264 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 322-394 chr4 143128132 143128321 + 2 NA Intergenic MER112|DNA|hAT-Charlie 56635 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 326-547 chr8 117596504 117596766 + 2 NA Intergenic Intergenic 75922 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 236-176 chr2 81953213 81953375 + 2 NA Intergenic Intergenic -486348 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 270-59 chr11 77281867 77282093 + 2 NA intron (NM_182833, intron 3 of 16) L1MEg|LINE|L1 19686 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 264-210 chr2 123021970 123022118 + 2 NA Intergenic L2|LINE|L2 51437 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 183-122 chr5 144857784 144857907 + 2 NA Intergenic Intergenic 652454 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 186-91 chr2 198878839 198878938 + 2 NA Intergenic Intergenic -503791 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 483-148 chr21 21686463 21686890 + 2 NA Intergenic Intergenic 50643 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 707-55 chr2 179715266 179715869 + 2 NA intron (NR_148056, intron 3 of 9) intron (NR_148056, intron 3 of 9) 30099 NM_001352813 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 310-543 chr8 135208357 135208631 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -25637 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 519-19 chr10 8794896 8795397 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -102843 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 264-12 chr1 118193773 118193949 + 2 NA Intergenic L1MA4|LINE|L1 -8633 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 247-159 chr17 65348612 65348822 + 2 NA Intergenic Intergenic -108824 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 261-177 chr2 38621615 38621839 + 2 NA Intergenic Intergenic -18691 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 285-370 chr6 111351325 111351566 + 2 NA intron (NM_001286431, intron 22 of 34) L1ME4c|LINE|L1 92106 NM_153369 91749 Hs.400572 NM_153369 ENSG00000173214 MFSD4B KIAA1919|NaGLT1 major facilitator superfamily domain containing 4B protein-coding 692-27 chr14 69871136 69871681 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -8008 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 398-209 chr3 95597358 95597632 + 2 NA Intergenic L1P4|LINE|L1 85698 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 263-376 chr7 4429669 4429805 + 2 NA Intergenic L1M3|LINE|L1 -252558 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 317-90 chr11 101314972 101315206 + 2 NA Intergenic L1M1|LINE|L1 -185276 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 141-74 chr5 123447258 123447363 + 2 NA Intergenic Intergenic -23718 NM_153223 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 471-152 chr20 52579331 52579653 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -41346 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 529-188 chr5 149207210 149207656 + 2 NA intron (NM_001370418, intron 5 of 18) intron (NM_001370418, intron 5 of 18) -64405 NM_001323063 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 265-48 chr10 117812862 117813044 + 2 NA Intergenic AluJb|SINE|Alu -233868 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 251-91 chr14 43084173 43084391 + 2 NA Intergenic Intergenic 1423001 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 657-92 chr7 138440359 138440917 + 2 NA Intergenic (CAG)n|Simple_repeat|Simple_repeat -19621 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 317-479 chr8 62807362 62807534 + 2 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -170413 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 492-91 chr14 71370944 71371277 + 2 NA intron (NM_001354285, intron 2 of 24) intron (NM_001354285, intron 2 of 24) -27227 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 389-40 chr10 82270014 82270296 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -37235 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 191-19 chr1 204394439 204394609 + 2 NA Intergenic Intergenic 17293 NM_032833 84919 Hs.304376 NM_032833 ENSG00000158615 PPP1R15B CREP|MSSGM2 protein phosphatase 1 regulatory subunit 15B protein-coding 222-327 chr6 82652628 82652788 + 2 NA Intergenic Intergenic 288464 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 300-180 chr2 13725667 13725887 + 2 NA Intergenic MER110-int|LTR|ERV1 675181 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 462-111 chr17 78587840 78588166 + 2 NA Intergenic AluSz|SINE|Alu -10609 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 396-175 chr2 126500084 126500395 + 2 NA Intergenic L1M4|LINE|L1 -155696 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 408-104 chr14 57511849 57512179 + 2 NA Intergenic Intergenic -18157 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 312-155 chr14 80675356 80675635 + 2 NA intron (NM_152446, intron 19 of 24) L1M5|LINE|L1 266243 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 202-14 chr1 183324266 183324450 + 2 NA intron (NM_015039, intron 1 of 10) MamGypLTR2c|LTR|Gypsy -19484 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 275-350 chr8 16376583 16376816 + 2 NA Intergenic Intergenic -183908 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 387-348 chr7 81790985 81791332 + 2 NA Intergenic Intergenic -21111 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 450-107 chr16 80152113 80152425 + 2 NA Intergenic Intergenic 357020 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 395-61 chr11 100245733 100246021 + 2 NA intron (NM_001243270, intron 15 of 23) MIRb|SINE|MIR -441411 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 559-105 chr2 202563330 202563865 + 2 NA 3' UTR (NM_001204, exon 13 of 13) 3' UTR (NM_001204, exon 13 of 13) -71372 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 261-74 chr11 121311510 121311669 + 2 NA 3' UTR (NM_006918, exon 5 of 5) 3' UTR (NM_006918, exon 5 of 5) 18721 NM_001024956 6309 Hs.287749 NM_006918 ENSG00000109929 SC5D ERG3|S5DES|SC5DL sterol-C5-desaturase protein-coding 241-247 chr3 137743115 137743286 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -21115 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 152-7 chr1 180002612 180002758 + 2 NA intron (NM_014810, intron 6 of 37) L1MB7|LINE|L1 47875 NM_014810 9857 Hs.413045 NM_014810 ENSG00000135837 CEP350 CAP350|GM133 centrosomal protein 350 protein-coding 650-21 chr12 60843922 60844400 + 2 NA Intergenic Intergenic 1154791 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 592-105 chr3 6481078 6481663 + 2 NA Intergenic L1MEg|LINE|L1 324079 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 378-384 chr6 150442361 150442659 + 2 NA Intergenic (TT)n|Simple_repeat|Simple_repeat 73498 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 561-25 chr10 74141769 74142242 + 2 NA intron (NM_207012, intron 1 of 9) AluSx3|SINE|Alu 8823 NR_135191 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 279-279 chr3 178672234 178672410 + 2 NA intron (NM_001278911, intron 1 of 4) MIR|SINE|MIR 113472 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 231-79 chr13 36044884 36045077 + 2 NA intron (NM_001330071, intron 3 of 16) HAL1|LINE|L1 86402 NM_001330071 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 289-249 chr2 180706342 180706495 + 2 NA intron (NR_104323, intron 1 of 5) MIR|SINE|MIR 14314 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 353-299 chr21 34044100 34044289 + 2 NA Intergenic Intergenic -29384 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 516-158 chr21 28795619 28796094 + 2 NA Intergenic Intergenic 89511 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 445-201 chr4 93358821 93359095 + 2 NA intron (NM_001286838, intron 7 of 14) intron (NM_001286838, intron 7 of 14) -469795 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 567-30 chr10 117769119 117769513 + 2 NA Intergenic L1ME3A|LINE|L1 -224248 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 276-202 chr18 42874697 42874858 + 2 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 240908 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 501-191 chr4 65813692 65814126 + 2 NA Intergenic HERVL-int|LTR|ERVL -143414 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 421-297 chr8 81991710 81992124 + 2 NA Intergenic LTR1|LTR|ERV1 -149631 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 305-316 chr21 17840537 17840805 + 2 NA intron (NR_024354, intron 1 of 2) LTR23|LTR|ERV1 -21315 NM_001100420 54149 Hs.293811 NM_017447 ENSG00000154642 C21orf91 C21orf14|C21orf38|CSSG1|EURL|YG81 chromosome 21 open reading frame 91 protein-coding 532-221 chr6 42021684 42022106 + 2 NA intron (NM_001136017, intron 1 of 4) intron (NM_001136017, intron 1 of 4) 26999 NM_001136126 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 505-236 chr5 35767070 35767437 + 2 NA intron (NM_024867, intron 26 of 36) L1ME3B|LINE|L1 -89638 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 503-35 chr10 71956602 71956940 + 2 NA Intergenic LTR13_|LTR|ERVK -7624 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 387-79 chr12 40537967 40538244 + 2 NA intron (NM_173600, intron 134 of 173) intron (NM_173600, intron 134 of 173) 144711 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 165-17 chr11 85848974 85849119 + 2 NA Intergenic Intergenic -6055 NM_001286159 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 337-60 chr10 80569971 80570146 + 2 NA intron (NM_001145719, intron 1 of 6) intron (NM_001145719, intron 1 of 6) 29239 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 245-58 chr10 113512375 113512553 + 2 NA Intergenic L1MB7|LINE|L1 -38367 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 315-459 chr8 16005770 16005988 + 2 NA Intergenic L1P3|LINE|L1 180393 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 480-197 chr3 124505459 124505842 + 2 NA intron (NM_001024660, intron 33 of 59) AluJb|SINE|Alu -79008 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 277-116 chr14 62388943 62389131 + 2 NA Intergenic L1ME2|LINE|L1 -249064 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 405-265 chr5 158823617 158823921 + 2 NA intron (NM_001324107, intron 7 of 15) intron (NM_001324107, intron 7 of 15) 274187 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 170-109 chr4 156362038 156362168 + 2 NA Intergenic Intergenic -408237 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 310-563 chr9 135125090 135125330 + 2 NA Intergenic L1MC5a|LINE|L1 37542 NM_001282611 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 225-241 chr4 52131240 52131410 + 2 NA Intergenic Intergenic 80021 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 255-441 chr8 132038997 132039180 + 2 NA exon (NM_001080399, exon 7 of 14) exon (NM_001080399, exon 7 of 14) 20294 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 360-30 chr10 29343383 29343565 + 2 NA Intergenic Intergenic 54404 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 270-324 chr6 14582294 14582473 + 2 NA Intergenic MER33|DNA|hAT-Charlie -296929 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 276-72 chr11 11089474 11089717 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 231378 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 390 chr1 7079896 7080099 + 2 NA intron (NM_001349608, intron 2 of 21) L1ME1|LINE|L1 294543 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 369-197 chr2 66739027 66739273 + 2 NA Intergenic L1MB7|LINE|L1 -35923 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 264-368 chr6 126706195 126706420 + 2 NA Intergenic Intergenic 221676 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 161-82 chr5 24384132 24384243 + 2 NA Intergenic Intergenic 260791 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 372-208 chr19 30302740 30302951 + 2 NA Intergenic Intergenic -69539 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 252-420 chr8 83167150 83167373 + 2 NA Intergenic Intergenic -236497 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 471-202 chr4 167560251 167560637 + 2 NA Intergenic L1PA13|LINE|L1 -325854 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 125-45 chr4 65354924 65355018 + 2 NA intron (NM_001281767, intron 12 of 16) intron (NM_001281767, intron 12 of 16) 314517 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 427-7 chr1 104999362 104999631 + 2 NA Intergenic Intergenic 619439 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 295-442 chr7 63060071 63060250 + 2 NA Intergenic Intergenic 243896 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 509-118 chr2 134094988 134095462 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -24710 NM_001371457 435-124 chr2 86649430 86649659 + 2 NA intron (NM_001198954, intron 2 of 7) L1MEc|LINE|L1 -25667 NM_001198951 7844 Hs.469199 NM_005667 ENSG00000239305 RNF103 HKF-1|KF-1|KF1|ZFP-103|ZFP103 ring finger protein 103 protein-coding 298-472 chr8 120043450 120043659 + 2 NA intron (NM_022783, intron 8 of 8) intron (NM_022783, intron 8 of 8) -81548 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 371-16 chr1 152969651 152969971 + 2 NA promoter-TSS (NM_173080) promoter-TSS (NM_173080) -837 NM_173080 163778 Hs.433629 NM_173080 ENSG00000184148 SPRR4 - small proline rich protein 4 protein-coding 201-82 chr14 81666420 81666570 + 2 NA Intergenic L1MC5a|LINE|L1 -43434 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 347-18 chr1 106236539 106236850 + 2 NA Intergenic Intergenic -208441 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 365-66 chr11 24760263 24760562 + 2 NA intron (NM_001009909, intron 4 of 11) intron (NM_001009909, intron 4 of 11) 263359 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 483-69 chr14 73299552 73299903 + 2 NA intron (NM_001005745, intron 5 of 10) intron (NM_001005745, intron 5 of 10) -53726 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 505-64 chr12 92383609 92383909 + 2 NA Intergenic Intergenic -37772 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 264-216 chr2 144563741 144563923 + 2 NA intron (NR_110570, intron 1 of 2) intron (NR_110570, intron 1 of 2) -39388 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 504-11 chr1 181448525 181448891 + 2 NA Intergenic Intergenic -34809 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 520-331 chrX 46506637 46506981 + 2 NA intron (NM_001190417, intron 5 of 5) HAL1|LINE|L1 38612 NM_001039891 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 314-231 chr17 79521458 79521650 + 2 NA intron (NM_001350451, intron 1 of 14) intron (NM_001350451, intron 1 of 14) -5406 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 316-399 chr4 70559872 70560125 + 2 NA Intergenic Intergenic -32258 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 254-369 chr7 13467752 13467999 + 2 NA Intergenic Intergenic 518639 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 467-306 chrX 85222262 85222650 + 2 NA intron (NM_001367858, intron 2 of 11) intron (NM_001367858, intron 2 of 11) 11750 NR_110651 101928128 Hs.636014 NR_110651 LOC101928128 - uncharacterized LOC101928128 ncRNA 348-195 chr18 1211723 1211948 + 2 NA Intergenic L1MA5A|LINE|L1 147794 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 349-144 chr13 61401065 61401264 + 2 NA Intergenic Intergenic 14358 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 314-491 chr6 23129823 23130101 + 2 NA Intergenic Intergenic -412038 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 365-41 chr10 29777942 29778134 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -41102 NM_001323599 6840 Hs.499209 NM_003174 ENSG00000197321 SVIL - supervillin protein-coding 461-255 chr8 2861438 2861732 + 2 NA Intergenic Intergenic -133134 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 366-269 chr3 7762809 7763061 + 2 NA Intergenic Intergenic -227651 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 320-302 chr20 5360269 5360500 + 2 NA Intergenic Intergenic -43652 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 315-387 chr5 86538998 86539245 + 2 NA Intergenic Intergenic -78820 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 411-47 chr10 129585342 129585599 + 2 NA intron (NM_002412, intron 2 of 4) MER2B|DNA|TcMar-Tigger 118229 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 529-144 chr3 111649615 111650055 + 2 NA non-coding (NR_134917, exon 14 of 15) non-coding (NR_134917, exon 14 of 15) -24841 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 222-5 chr1 46099760 46099928 + 2 NA intron (NM_001303427, intron 1 of 9) L1ME3E|LINE|L1 30829 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 386-159 chr2 7928788 7929163 + 2 NA intron (NR_015405, intron 2 of 2) AluSg|SINE|Alu -29320 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 486-53 chr11 112711004 112711403 + 2 NA Intergenic L1M5|LINE|L1 -155401 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 306-219 chr2 5786898 5787148 + 2 NA Intergenic Intergenic 25573 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 399-103 chr16 5503007 5503385 + 2 NA Intergenic MIR|SINE|MIR 113054 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 488-113 chr18 63622218 63622543 + 2 NA Intergenic Intergenic 21876 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 336-565 chr8 136234840 136235109 + 2 NA Intergenic LTR67B|LTR|ERVL -295824 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 412-255 chr5 42471353 42471712 + 2 NA intron (NM_001242401, intron 1 of 10) MIR|SINE|MIR 46551 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 277-467 chrX 86092532 86092683 + 2 NA Intergenic Intergenic -45049 NM_000390 1121 Hs.496449 NM_000390 ENSG00000188419 CHM DXS540|GGTA|HSD-32|REP-1|TCD CHM Rab escort protein protein-coding 493-256 chr6 44954662 44955039 + 2 NA intron (NM_181356, intron 9 of 12) intron (NM_181356, intron 9 of 12) 242920 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 398-58 chr11 48724103 48724304 + 2 NA Intergenic ALR/Alpha|Satellite|centr 235410 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 293-432 chr8 79579041 79579249 + 2 NA Intergenic Intergenic -31972 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 247-361 chr6 68731133 68731359 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 95964 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 265-210 chr20 6890844 6891102 + 2 NA Intergenic AluSx|SINE|Alu 123287 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 190-110 chr22 35002596 35002707 + 2 NA Intergenic Intergenic -4735 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 222-260 chr4 30309687 30309891 + 2 NA Intergenic Intergenic -410580 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 598-94 chr3 192242636 192242982 + 2 NA intron (NR_046596, intron 1 of 4) intron (NR_046596, intron 1 of 4) 4179 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 171-134 chr8 43509600 43509731 + 2 NA Intergenic Intergenic 217223 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 335-9 chr1 72085285 72085571 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) 197111 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 522-110 chr17 77163336 77163817 + 2 NA intron (NM_001143999, intron 3 of 16) intron (NM_001143999, intron 3 of 16) -21637 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 658-80 chr3 82829491 82829925 + 2 NA Intergenic Intergenic 843566 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 306-59 chr10 82699006 82699196 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -466181 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 237-212 chr20 46570648 46570824 + 2 NA intron (NM_001193340, intron 10 of 12) MER47B|DNA|TcMar-Tigger -20082 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 340-67 chr11 3680577 3680858 + 2 NA intron (NR_157590, intron 29 of 31) AluJb|SINE|Alu -9333 NM_001303034 57053 Hs.732806 NM_020402 ENSG00000129749 CHRNA10 - cholinergic receptor nicotinic alpha 10 subunit protein-coding 300-367 chr5 108804368 108804530 + 2 NA intron (NM_001308028, intron 3 of 17) L1PA16|LINE|L1 55501 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 388-368 chr9 82578164 82578465 + 2 NA Intergenic L1MB4|LINE|L1 484828 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 253-344 chr5 125591552 125591795 + 2 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 98412 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 492-278 chr9 25031838 25032185 + 2 NA Intergenic L1MB7|LINE|L1 -486114 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 801-45 chr5 107929705 107930436 + 2 NA intron (NM_001163315, intron 7 of 8) L2b|LINE|L2 -259133 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 334-460 chr6 53115252 53115550 + 2 NA Intergenic MER34A1|LTR|ERV1 33440 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 383-56 chr11 78689567 78689822 + 2 NA intron (NM_001098816, intron 28 of 33) intron (NM_001098816, intron 28 of 33) -114830 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 336-336 chr21 22967667 22967991 + 2 NA Intergenic Intergenic -111455 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 383-187 chr2 71944904 71945258 + 2 NA Intergenic Intergenic 202781 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 526-56 chr12 16893683 16894127 + 2 NA Intergenic Intergenic -94842 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 343-55 chr10 82473945 82474201 + 2 NA intron (NR_163253, intron 3 of 10) L1MB3|LINE|L1 -241153 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 215-282 chr6 142350388 142350543 + 2 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 48458 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 160-127 chr9 5972151 5972251 + 2 NA intron (NM_001017969, intron 2 of 7) L1MEd|LINE|L1 -35625 NR_039811 100616288 NR_039811 ENSG00000263575 MIR4665 mir-4665 microRNA 4665 ncRNA 707-37 chr16 49256098 49256654 + 2 NA Intergenic L1MC3|LINE|L1 25462 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 204-61 chr12 88378005 88378184 + 2 NA Intergenic Intergenic 202377 NM_000899 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 321-203 chr15 97272218 97272432 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 249486 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 419-203 chr4 44272292 44272568 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 176379 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 358-350 chr4 149868615 149868878 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -52903 NM_001363509 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 152-48 chr2 49058138 49058247 + 2 NA intron (NM_000145, intron 2 of 9) L1M2c|LINE|L1 -1411 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 249-197 chr2 78513041 78513234 + 2 NA Intergenic Intergenic -32394 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 547-146 chr3 158394535 158394888 + 2 NA intron (NM_001271838, intron 6 of 9) L1PA15|LINE|L1 -131997 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 226-226 chr3 84149369 84149500 + 2 NA Intergenic L1M3a|LINE|L1 720141 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 387-87 chr12 92724053 92724329 + 2 NA Intergenic Intergenic -12298 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 651-38 chr14 61166667 61167126 + 2 NA Intergenic L1M5|LINE|L1 114442 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 154-95 chr6 87884386 87884537 + 2 NA intron (NR_110869, intron 2 of 4) L2c|LINE|L2 99601 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 297-253 chr2 241354216 241354380 + 2 NA TTS (NM_001349309) TTS (NM_001349309) -1987 NM_001282983 9855 Hs.726316 NM_014808 ENSG00000006607 FARP2 FIR|FRG|PLEKHC3 FERM, ARH/RhoGEF and pleckstrin domain protein 2 protein-coding 230-207 chr20 46422097 46422268 + 2 NA intron (NR_146919, intron 1 of 3) intron (NR_146919, intron 1 of 3) -15131 NM_182764 63916 Hs.210469 NM_022086 ENSG00000062598 ELMO2 CED-12|CED12|Ced-12A|ELMO-2|VMPI engulfment and cell motility 2 protein-coding 260-414 chr7 97028907 97029076 + 2 NA Intergenic Intergenic -4160 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 401-156 chr2 56519087 56519414 + 2 NA Intergenic Intergenic -333480 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 258-383 chr8 54181022 54181222 + 2 NA Intergenic L1MB7|LINE|L1 45881 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 767-40 chr5 25594985 25595565 + 2 NA Intergenic Intergenic 404322 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 301-53 chr10 117045966 117046202 + 2 NA intron (NM_001258300, intron 2 of 17) L1MCb|LINE|L1 -40507 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 372-288 chr20 55686472 55686786 + 2 NA Intergenic Intergenic -259432 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 515-207 chr5 74879639 74879954 + 2 NA Intergenic L1M4|LINE|L1 -12830 NM_015566 26049 Hs.91662 NM_015566 ENSG00000198780 FAM169A SLAP75 family with sequence similarity 169 member A protein-coding 462-186 chr3 132451418 132451783 + 2 NA intron (NM_001329126, intron 6 of 56) intron (NM_001329126, intron 6 of 56) 34098 NM_001329126 23317 Hs.12707 NM_015268 ENSG00000138246 DNAJC13 PARK21|RME8 DnaJ heat shock protein family (Hsp40) member C13 protein-coding 290-168 chr17 3352976 3353138 + 2 NA Intergenic L1M1|LINE|L1 42812 NR_024128 390756 Hs.632245 NM_001005334 ENSG00000180068 OR3A4P OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P olfactory receptor family 3 subfamily A member 4 pseudogene pseudo 252-340 chr5 101846279 101846456 + 2 NA Intergenic Intergenic 449917 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 364-41 chr10 9558328 9558636 + 2 NA Intergenic L1M5|LINE|L1 -262889 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 467-139 chr2 136575354 136575700 + 2 NA Intergenic Intergenic -190018 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 342-58 chr10 31237065 31237272 + 2 NA intron (NR_134478, intron 1 of 2) L1MA5|LINE|L1 49285 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 194-91 chr2 72209623 72209785 + 2 NA intron (NR_135773, intron 19 of 21) intron (NR_135773, intron 19 of 21) -61842 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 255-358 chr6 86589392 86589645 + 2 NA Intergenic Intergenic -348010 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 731-54 chr4 85070210 85070665 + 2 NA Intergenic L1PB4|LINE|L1 102953 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 285-355 chr5 147211529 147211730 + 2 NA intron (NR_147191, intron 2 of 2) intron (NR_147191, intron 2 of 2) 23230 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 312-86 chr11 81977746 81978042 + 2 NA intron (NR_120571, intron 6 of 7) L1MC3|LINE|L1 -87058 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 381-299 chr5 21597118 21597444 + 2 NA Intergenic AluSc|SINE|Alu 137801 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 261-70 chr11 90419992 90420180 + 2 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 135771 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 385-118 chr15 86363919 86364277 + 2 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -47130 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 372-339 chr3 150292131 150292441 + 2 NA intron (NR_110186, intron 2 of 3) L1MC2|LINE|L1 31461 NR_110186 101928022 Hs.555199 NR_110186 LINC01214 - long intergenic non-protein coding RNA 1214 ncRNA 183-17 chr10 75737517 75737666 + 2 NA intron (NR_132791, intron 1 of 2) intron (NR_132791, intron 1 of 2) 25136 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 298-262 chr20 60458831 60459024 + 2 NA Intergenic Intergenic 14049 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 205-93 chr14 85029728 85029905 + 2 NA Intergenic L1ME3A|LINE|L1 -242116 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 199-204 chr5 118775970 118776128 + 2 NA Intergenic LOR1b|LTR|ERV1 179861 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 270-282 chr4 155597276 155597518 + 2 NA Intergenic Intergenic -69313 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 115-6 chr10 69282549 69282652 + 2 NA 5' UTR (NM_033498, exon 2 of 21) 5' UTR (NM_033498, exon 2 of 21) 4104 NM_001358263 3098 Hs.370365 NM_000188 ENSG00000156515 HK1 HK|HK1-ta|HK1-tb|HK1-tc|HKD|HKI|HMSNR|HXK1|RP79|hexokinase hexokinase 1 protein-coding 606-126 chr5 3728814 3729300 + 2 NA Intergenic Intergenic 133225 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 231-161 chr2 51936895 51937088 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -433657 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 324-72 chr10 116569673 116569908 + 2 NA Intergenic L2c|LINE|L2 -21169 NM_006229 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 224-4 chr1 15415376 15415491 + 2 NA intron (NM_024329, intron 1 of 3) intron (NM_024329, intron 1 of 3) 5545 NM_024329 79180 Hs.465374 NM_024329 ENSG00000142634 EFHD2 SWS1 EF-hand domain family member D2 protein-coding 391-257 chr4 48997706 48998065 + 2 NA intron (NM_001286791, intron 5 of 15) intron (NM_001286791, intron 5 of 15) 11243 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 352-467 chr6 124752760 124753104 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -209613 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 311-341 chr3 54118622 54118919 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -3782 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 207-146 chr2 123617374 123617521 + 2 NA Intergenic L1MA2|LINE|L1 407727 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 337-198 chr17 33163838 33164020 + 2 NA intron (NM_001094, intron 1 of 9) L2a|LINE|L2 129059 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 237-139 chr16 81321739 81321926 + 2 NA intron (NM_022041, intron 1 of 10) intron (NM_022041, intron 1 of 10) 6866 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 743 chr1 26635866 26636353 + 2 NA Intergenic FLAM_C|SINE|Alu 58022 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 253-116 chr13 50537584 50537736 + 2 NA Intergenic L1MB7|LINE|L1 -10211 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 563-176 chr7 97307074 97307538 + 2 NA Intergenic Intergenic 190713 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 535-55 chr12 66825603 66825961 + 2 NA Intergenic Intergenic -21513 NM_001366723 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 441-149 chr22 34105253 34105559 + 2 NA Intergenic Intergenic -182518 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 568-156 chr5 3008970 3009509 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 91385 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 321-309 chr2 175431518 175431776 + 2 NA Intergenic Intergenic -249937 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 233-215 chr22 31048266 31048446 + 2 NA Intergenic AluJo|SINE|Alu -32962 NM_006932 6525 Hs.149098 NM_006932 ENSG00000183963 SMTN - smoothelin protein-coding 839-40 chr5 43713645 43714222 + 2 NA Intergenic Intergenic -110703 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 322-386 chr4 111283568 111283862 + 2 NA Intergenic L1ME3Cz|LINE|L1 -423068 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 241-415 chr8 139433539 139433686 + 2 NA Intergenic Intergenic 269511 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 232-346 chr7 24679283 24679470 + 2 NA intron (NM_016447, intron 11 of 12) intron (NM_016447, intron 11 of 12) 78088 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 126-42 chr3 190215281 190215365 + 2 NA Intergenic L1M5|LINE|L1 -92886 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 321-453 chr5 20633491 20633767 + 2 NA intron (NR_149120, intron 1 of 11) L1MA4A|LINE|L1 -18094 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 572-184 chr8 135938178 135938731 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger 480998 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 448-224 chr5 129254441 129254738 + 2 NA Intergenic L1MA2|LINE|L1 142558 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 432-246 chr6 63425150 63425451 + 2 NA Intergenic L1MD1|LINE|L1 -105317 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 378-264 chr20 57458485 57458705 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -65539 NR_149006 100291105 Hs.638423 NR_149006 ENSG00000218018 LOC100291105 - uncharacterized LOC100291105 ncRNA 250-343 chr5 62848640 62848785 + 2 NA Intergenic L1M2|LINE|L1 269893 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 587-135 chr5 103770342 103770668 + 2 NA Intergenic Intergenic -207716 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 231-57 chr11 38317427 38317586 + 2 NA Intergenic L1MA3|LINE|L1 328850 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 272-390 chr6 89945544 89945798 + 2 NA intron (NM_021813, intron 7 of 8) L1MB7|LINE|L1 51202 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 207-179 chr22 48411064 48411208 + 2 NA Intergenic L1MCb|LINE|L1 -78417 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 243-304 chr3 150204200 150204387 + 2 NA Intergenic Intergenic -34226 NR_110168 101927992 Hs.534682 NR_110167 ENSG00000244541 LINC01213 - long intergenic non-protein coding RNA 1213 ncRNA 233-105 chr14 104124364 104124533 + 2 NA Intergenic L1MEc|LINE|L1 -6945 NR_039859 100616173 NR_039859 ENSG00000283165 MIR203B MIR3545|hsa-mir-203b microRNA 203b ncRNA 527-125 chr2 52303127 52303448 + 2 NA intron (NR_135237, intron 7 of 10) L1ME3|LINE|L1 -67361 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 343-252 chr2 89820220 89820541 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -182473 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 257-27 chr1 220433364 220433568 + 2 NA Intergenic Intergenic -94670 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 391-286 chr5 56625084 56625371 + 2 NA Intergenic Intergenic -18971 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 359-343 chr3 190477267 190477614 + 2 NA Intergenic L1MA4|LINE|L1 -27564 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 348-555 chr9 79024684 79024920 + 2 NA Intergenic Intergenic 120864 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 488-18 chr1 227719676 227720074 + 2 NA Intergenic HERVIP10FH-int|LTR|ERV1 -8293 NM_001323933 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 334-20 chr1 101674918 101675120 + 2 NA Intergenic Intergenic 172061 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 188-127 chr3 25945663 25945822 + 2 NA Intergenic Intergenic -72047 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 140-45 chr21 26050309 26050394 + 2 NA intron (NM_001136131, intron 5 of 15) intron (NM_001136131, intron 5 of 15) 90039 NM_001136016 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 409-68 chr14 20651689 20651913 + 2 NA Intergenic HAL1ME|LINE|L1 -10110 NM_001001968 341799 Hs.513132 NM_001001968 ENSG00000181803 OR6S1 OR14-37|OR6S1Q olfactory receptor family 6 subfamily S member 1 protein-coding 318-144 chr12 61389530 61389693 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 803228 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 347-83 chr11 129512480 129512778 + 2 NA Intergenic L1MD1|LINE|L1 104640 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 435-113 chr19 39186105 39186519 + 2 NA Intergenic AluSx|SINE|Alu -10652 NM_001001414 342897 Hs.726934 NM_001001414 ENSG00000188505 NCCRP1 FBXO50|NCCRP-1 non-specific cytotoxic cell receptor protein 1 homolog (zebrafish) protein-coding 377-71 chr11 80968053 80968389 + 2 NA Intergenic Intergenic -205418 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 199-129 chr2 176609080 176609244 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -8110 NR_031648 100302142 NR_031648 ENSG00000283203 MIR1246 MIRN1246|hsa-mir-1246 microRNA 1246 ncRNA 352-409 chr5 29282244 29282443 + 2 NA Intergenic Intergenic 113633 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 176-143 chr8 114429695 114429837 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger -992827 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 280-103 chr12 130478565 130478757 + 2 NA intron (NM_001351233, intron 5 of 15) L1ME3G|LINE|L1 140774 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 339-493 chr6 78146241 78146528 + 2 NA Intergenic L1MA1|LINE|L1 392925 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 370-4 chr1 57944685 57945000 + 2 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 84261 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 264-428 chr8 129492907 129493108 + 2 NA intron (NR_130917, intron 1 of 3) MLT1F2|LTR|ERVL-MaLR -8865 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 352-350 chr4 29274354 29274659 + 2 NA Intergenic Intergenic 60214 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 477-61 chr11 92562091 92562476 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 210187 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 515-230 chr6 39240402 39240757 + 2 NA Intergenic Intergenic -11104 NM_003740 8645 Hs.444448 NM_003740 ENSG00000164626 KCNK5 K2p5.1|KCNK5b|TASK-2|TASK2 potassium two pore domain channel subfamily K member 5 protein-coding 307-503 chr9 7326788 7327043 + 2 NA Intergenic Intergenic 472863 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 318-278 chr2 100492634 100492847 + 2 NA Intergenic AluSz6|SINE|Alu 22258 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 345-325 chr21 30145493 30145734 + 2 NA Intergenic Intergenic 21192 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 430-66 chr12 75156355 75156582 + 2 NA intron (NM_001260499, intron 2 of 3) MER58B|DNA|hAT-Charlie 53280 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 226-86 chr14 23793212 23793391 + 2 NA Intergenic MER41-int|LTR|ERV1 156937 NM_182908 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 345-113 chr12 20513078 20513306 + 2 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -58672 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 315-394 chr5 123148072 123148244 + 2 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -57842 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 220-306 chr5 156693218 156693400 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -156986 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 628-141 chr9 77539790 77540293 + 2 NA intron (NM_004297, intron 1 of 6) L1MA4A|LINE|L1 92392 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 272-247 chr21 30811566 30811776 + 2 NA Intergenic Intergenic 1603 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 498-112 chr2 2153311 2153648 + 2 NA intron (NM_015025, intron 3 of 24) intron (NM_015025, intron 3 of 24) -165753 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 462-28 chr10 60183018 60183402 + 2 NA intron (NM_001204403, intron 18 of 43) intron (NM_001204403, intron 18 of 43) -42194 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 266-85 chr12 23162477 23162649 + 2 NA Intergenic L1MB7|LINE|L1 -13073 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 528-139 chr2 214042992 214043360 + 2 NA intron (NR_047660, intron 12 of 14) LTR80A|LTR|ERVL 285109 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 255-237 chr21 16692496 16692639 + 2 NA Intergenic Intergenic 102330 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 346-411 chr5 166249004 166249316 + 2 NA Intergenic Intergenic 677210 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 334-127 chr13 76140361 76140606 + 2 NA Intergenic (CTCTGT)n|Simple_repeat|Simple_repeat -205351 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 440-273 chr9 111257160 111257433 + 2 NA Intergenic L1M6|LINE|L1 13918 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 229-251 chr3 84706136 84706291 + 2 NA intron (NR_033860, intron 11 of 20) L2|LINE|L2 163362 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 188-37 chr12 30829430 30829602 + 2 NA Intergenic Intergenic 33835 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 229-124 chr15 54300814 54300972 + 2 NA intron (NM_001329919, intron 12 of 31) intron (NM_001329919, intron 12 of 31) 288245 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 205-129 chr19 30926876 30927045 + 2 NA Intergenic MIR|SINE|MIR -240550 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 193-113 chr2 124491791 124491930 + 2 NA intron (NM_001367498, intron 7 of 23) L1MA9|LINE|L1 466573 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 376-98 chr13 103935076 103935316 + 2 NA Intergenic Intergenic 509996 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 242-65 chr12 896157 896366 + 2 NA exon (NM_014823, exon 22 of 26) exon (NM_014823, exon 22 of 26) 36815 NM_001297420 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 155-67 chr3 61233368 61233514 + 2 NA intron (NM_001320900, intron 1 of 9) L1ME4a|LINE|L1 18011 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 515-49 chr11 115104172 115104631 + 2 NA Intergenic Intergenic -229176 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 256-356 chr6 40810129 40810376 + 2 NA Intergenic Intergenic 213028 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 362-460 chr9 74211472 74211680 + 2 NA Intergenic L1MA2|LINE|L1 -159955 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 276-419 chr6 167574384 167574615 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -101709 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 511-62 chr14 46111178 46111586 + 2 NA intron (NR_102702, intron 1 of 3) L1MA3|LINE|L1 47223 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 347-231 chr2 84641425 84641764 + 2 NA intron (NM_001370, intron 32 of 76) L2a|LINE|L2 125139 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 508-44 chr11 114424366 114424658 + 2 NA Intergenic L1M1|LINE|L1 -14955 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 505-28 chr10 63994625 63995052 + 2 NA Intergenic Intergenic -472948 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 260-444 chr8 117133333 117133511 + 2 NA intron (NM_001172815, intron 2 of 10) intron (NM_001172815, intron 2 of 10) -1573 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 974-19 chr7 153660551 153661268 + 2 NA Intergenic Intergenic -87224 NM_001364498 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 213-253 chr6 143196147 143196315 + 2 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 31449 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 337-569 chr8 138942852 138943043 + 2 NA Intergenic Intergenic -28906 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 322-487 chr7 43448513 43448738 + 2 NA intron (NM_001287059, intron 10 of 27) intron (NM_001287059, intron 10 of 27) 73917 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 324-214 chr17 14974703 14974888 + 2 NA Intergenic Intergenic -40010 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 382-404 chr8 78453411 78453634 + 2 NA Intergenic L1MA6|LINE|L1 -62818 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 421-204 chr4 14410972 14411362 + 2 NA Intergenic Intergenic 299199 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 337-24 chr1 166317790 166318006 + 2 NA Intergenic L1MC1|LINE|L1 -151143 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 249-136 chr16 5689905 5690107 + 2 NA Intergenic L2a|LINE|L2 57539 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 327-346 chr3 164522592 164522900 + 2 NA Intergenic MER52A|LTR|ERV1 308734 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 372-272 chr2 227678119 227678366 + 2 NA Intergenic Intergenic 28414 NM_001371412 214-355 chr9 113881646 113881823 + 2 NA intron (NM_001318042, intron 1 of 14) intron (NM_001318042, intron 1 of 14) 5425 NM_001318042 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 341-188 chr16 66212730 66212982 + 2 NA Intergenic Intergenic -153835 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 355-453 chr7 17944020 17944296 + 2 NA Intergenic Intergenic -3650 NM_001350868 23161 Hs.487648 NM_015132 ENSG00000071189 SNX13 RGS-PX1 sorting nexin 13 protein-coding 145-12 chr10 55060438 55060572 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -259214 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 616-32 chr12 85235415 85235743 + 2 NA intron (NM_001079910, intron 26 of 26) LTR16|LTR|ERVL -44641 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 188-47 chr13 66019720 66019856 + 2 NA Intergenic L2a|LINE|L2 -53359 NR_039692 100616302 NR_039692 ENSG00000263581 MIR548X2 - microRNA 548x-2 ncRNA 230-169 chr2 49345881 49346038 + 2 NA Intergenic HAL1|LINE|L1 -191432 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 217-185 chr2 125929254 125929428 + 2 NA Intergenic Intergenic 188644 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 267-88 chr12 63263545 63263762 + 2 NA Intergenic L1M4a1|LINE|L1 -110843 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 333-47 chr10 16396735 16397051 + 2 NA Intergenic AluJr|SINE|Alu -40050 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 387-204 chr20 42097642 42097863 + 2 NA intron (NM_133170, intron 28 of 31) intron (NM_133170, intron 28 of 31) -479375 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 404-93 chr14 42736179 42736507 + 2 NA Intergenic Intergenic 1129487 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 466 chr1 14427207 14427626 + 2 NA Intergenic MIR|SINE|MIR -7443 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 416-200 chr20 13891756 13892091 + 2 NA intron (NR_073206, intron 6 of 20) L1M4c|LINE|L1 98691 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 513-245 chr6 61318915 61319339 + 2 NA Intergenic ALR/Alpha|Satellite|centr -255003 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 210-117 chr2 17133199 17133369 + 2 NA Intergenic MER49|LTR|ERV1 385156 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 321-555 chr8 86731524 86731752 + 2 NA intron (NM_019098, intron 2 of 17) MIRb|SINE|MIR 12037 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 536-128 chr2 125300628 125300993 + 2 NA Intergenic L1MB3|LINE|L1 817175 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 227-381 chr8 138542561 138542749 + 2 NA Intergenic Intergenic -44925 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 299-320 chr4 57691414 57691574 + 2 NA Intergenic Intergenic 265622 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 263-263 chr3 101203861 101204073 + 2 NA Intergenic Intergenic 116608 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 470-50 chr12 40565945 40566274 + 2 NA intron (NM_173600, intron 169 of 173) intron (NM_173600, intron 169 of 173) -126330 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 258-295 chr4 79654455 79654634 + 2 NA Intergenic Intergenic 161951 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 427-227 chr6 92058161 92058540 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -367922 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 164-31 chr13 22412193 22412333 + 2 NA Intergenic L1M4|LINE|L1 201978 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 321-405 chr4 30332248 30332503 + 2 NA Intergenic Intergenic -387994 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 395-216 chr3 9606020 9606274 + 2 NA Intergenic Intergenic -43358 NM_001077525 64419 Hs.475382 NM_022485 ENSG00000163719 MTMR14 C3orf29 myotubularin related protein 14 protein-coding 639-35 chr14 40987736 40988211 + 2 NA intron (NR_109758, intron 3 of 3) Charlie3|DNA|hAT-Charlie 33262 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 202-23 chr10 5542061 5542208 + 2 NA Intergenic L1MD|LINE|L1 -15888 NR_120497 100132159 Hs.239600 NR_120496 CALML3-AS1 - CALML3 antisense RNA 1 ncRNA 178-131 chr7 26750159 26750301 + 2 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 107493 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 377-25 chr1 185506343 185506689 + 2 NA Intergenic L1PB1|LINE|L1 121972 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 619-103 chr5 118626782 118627294 + 2 NA intron (NR_104998, intron 4 of 4) (TA)n|Simple_repeat|Simple_repeat 30850 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 172-36 chr14 67633389 67633534 + 2 NA intron (NM_001172, intron 2 of 7) intron (NM_001172, intron 2 of 7) 13541 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 300-370 chr5 120912977 120913205 + 2 NA Intergenic Intergenic 381627 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 191-146 chr4 35289238 35289391 + 2 NA Intergenic Intergenic 954625 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 539-6 chr1 53060670 53061141 + 2 NA Intergenic MIRb|SINE|MIR -1147 NM_153703 127435 Hs.586141 NM_153703 ENSG00000174348 PODN PCAN|SLRR5A podocan protein-coding 645-132 chr8 139131698 139132089 + 2 NA Intergenic Intergenic -217852 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 355-246 chr2 107084732 107085073 + 2 NA Intergenic L1ME3A|LINE|L1 -197793 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 208-53 chr12 17089605 17089752 + 2 NA Intergenic Intergenic 100931 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 502-84 chr14 44138509 44138863 + 2 NA Intergenic Intergenic 368597 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 361-74 chr11 39260442 39260756 + 2 NA Intergenic Intergenic 611741 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 482-82 chr15 24648743 24649072 + 2 NA Intergenic L1MC3|LINE|L1 -26487 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 827-39 chr4 117604072 117604637 + 2 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 175956 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 640-31 chr14 47950739 47951190 + 2 NA Intergenic L1MD3|LINE|L1 -155950 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 199-112 chr2 58612045 58612170 + 2 NA intron (NR_033873, intron 1 of 13) intron (NR_033873, intron 1 of 13) 91354 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 202-52 chr12 60090846 60090980 + 2 NA Intergenic L1MC3|LINE|L1 401543 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 159-56 chr3 82593714 82593809 + 2 NA Intergenic Intergenic 607619 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 251-166 chr2 36747544 36747770 + 2 NA intron (NM_001177969, intron 4 of 14) L1PA16|LINE|L1 50950 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 373-64 chr10 106209276 106209528 + 2 NA Intergenic Intergenic 69237 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 169-122 chr7 53108250 53108405 + 2 NA Intergenic L2a|LINE|L2 72694 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 321-24 chr1 163809828 163810113 + 2 NA Intergenic L2c|LINE|L2 -386779 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 127-26 chr13 112552183 112552293 + 2 NA intron (NM_006322, intron 8 of 21) intron (NM_006322, intron 8 of 21) 35915 NM_001286278 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 316-501 chr7 3234756 3235061 + 2 NA Intergenic Intergenic -66344 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 341-451 chr5 151929310 151929624 + 2 NA Intergenic MIR3|SINE|MIR -4616 NM_001292000 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 374-22 chr1 215689008 215689240 + 2 NA intron (NM_206933, intron 61 of 71) L2a|LINE|L2 121820 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 430-156 chr2 142156521 142156792 + 2 NA Intergenic L1MB7|LINE|L1 -24955 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 409-176 chr20 42904506 42904730 + 2 NA intron (NM_133170, intron 1 of 31) LTR1|LTR|ERV1 -64125 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 402-350 chr8 121589584 121589927 + 2 NA Intergenic Intergenic -49591 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 254-123 chr14 88880487 88880665 + 2 NA non-coding (NR_159362, exon 15 of 15) non-coding (NR_159362, exon 15 of 15) 55925 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 409-138 chr2 46427856 46428173 + 2 NA Intergenic L1M5|LINE|L1 -1176 NR_103805 101805491 Hs.304781 NR_103805 ENSG00000187600 LINC02583 - long intergenic non-protein coding RNA 2583 ncRNA 293-242 chr22 22842156 22842334 + 2 NA Intergenic L1M4|LINE|L1 19469 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 333-87 chr11 58431487 58431699 + 2 NA Intergenic L1PB4|LINE|L1 -8280 NM_001005566 390190 Hs.553753 NM_001005566 ENSG00000172365 OR5B2 OR11-240|OST073 olfactory receptor family 5 subfamily B member 2 protein-coding 434-163 chr20 39739571 39739936 + 2 NA Intergenic Intergenic -264708 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 360-184 chr18 65457753 65457958 + 2 NA Intergenic MIR|SINE|MIR -292397 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 173-63 chr2 30673401 30673545 + 2 NA Intergenic L1MEd|LINE|L1 133973 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 159-71 chr5 4397591 4397696 + 2 NA Intergenic Intergenic -375838 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 215-308 chr8 38597297 38597460 + 2 NA Intergenic Intergenic 3879 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 305-228 chr19 32150216 32150479 + 2 NA Intergenic L1MD|LINE|L1 -44431 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 306-149 chr14 65559258 65559511 + 2 NA intron (NM_004480, intron 2 of 9) MER2|DNA|TcMar-Tigger 88282 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 479-77 chr16 59889513 59889860 + 2 NA intron (NR_110917, intron 1 of 3) L1MA2|LINE|L1 34333 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 868-18 chr2 3079516 3080031 + 2 NA intron (NR_110228, intron 3 of 6) intron (NR_110228, intron 3 of 6) 46253 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 604-44 chr14 31862089 31862668 + 2 NA Intergenic L1M5|LINE|L1 -82475 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 316-384 chr4 31490585 31490797 + 2 NA Intergenic Intergenic -15853 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 297-337 chr4 83613127 83613282 + 2 NA Intergenic L1MA5|LINE|L1 77096 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 541-22 chr10 89107711 89108114 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -44501 NR_039827 100616192 NR_039827 ENSG00000265375 MIR4679-2 - microRNA 4679-2 ncRNA 365-436 chrX 70522271 70522495 + 2 NA Intergenic MIRb|SINE|MIR -66389 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 406-173 chr20 58490175 58490557 + 2 NA intron (NR_130908, intron 1 of 1) Arthur1|DNA|hAT-Tip100 24572 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 795-30 chr2 53801248 53801974 + 2 NA exon (NM_001127397, exon 7 of 13) exon (NM_001127397, exon 7 of 13) 14567 NM_015701 27248 Hs.438336 NM_015701 ENSG00000068912 ERLEC1 C2orf30|CIM|CL24936|CL25084|HEL117|XTP3-B|XTP3TPB endoplasmic reticulum lectin 1 protein-coding 351-526 chrX 42924056 42924347 + 2 NA Intergenic L1MA3|LINE|L1 -146038 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 412-128 chr18 6029087 6029369 + 2 NA TTS (NM_001365767) TTS (NM_001365767) -133274 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 330-99 chr11 79182249 79182573 + 2 NA intron (NM_001098816, intron 3 of 33) L1MC1|LINE|L1 219698 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 273-25 chr1 176141098 176141285 + 2 NA intron (NM_022457, intron 6 of 19) intron (NM_022457, intron 6 of 19) 66053 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 385-247 chr3 95979756 95980070 + 2 NA Intergenic L1MA4|LINE|L1 -296720 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 655-35 chr14 24563659 24564194 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 12324 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 273-108 chr12 108085446 108085706 + 2 NA Intergenic L1M5|LINE|L1 -43712 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 621-14 chr10 17543536 17543991 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 73611 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 316-567 chr8 130661385 130661695 + 2 NA Intergenic Intergenic -217866 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 303-460 chr8 105800640 105800859 + 2 NA intron (NM_001362837, intron 7 of 7) MIRc|SINE|MIR 259754 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 251-336 chr6 63493875 63494071 + 2 NA Intergenic AluSx|SINE|Alu -78039 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 370-439 chr8 86660949 86661144 + 2 NA intron (NM_019098, intron 6 of 17) intron (NM_019098, intron 6 of 17) 82629 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 464-94 chr18 6638394 6638768 + 2 NA Intergenic Intergenic -91135 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 362-275 chr3 89796040 89796378 + 2 NA Intergenic Intergenic 688588 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 523-294 chrX 124458316 124458792 + 2 NA intron (NM_014253, intron 21 of 30) Tigger14a|DNA|TcMar-Tigger 112272 NM_002351 4068 Hs.349094 NM_002351 ENSG00000183918 SH2D1A DSHP|EBVS|IMD5|LYP|MTCP1|SAP|SAP/SH2D1A|XLP|XLPD|XLPD1 SH2 domain containing 1A protein-coding 249-272 chr3 140542411 140542591 + 2 NA intron (NM_022131, intron 9 of 16) intron (NM_022131, intron 9 of 16) -33712 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 780-64 chr8 68159307 68159985 + 2 NA intron (NM_024870, intron 35 of 39) LTR49-int|LTR|ERV1 -170727 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 213-28 chr10 21123481 21123644 + 2 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -50428 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 170-141 chr8 124348336 124348433 + 2 NA intron (NM_194291, intron 1 of 6) intron (NM_194291, intron 1 of 6) 24315 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 328-161 chr14 78413274 78413468 + 2 NA intron (NM_004796, intron 1 of 16) AluSp|SINE|Alu 9652 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 476-178 chr3 64010003 64010451 + 2 NA TTS (NM_001271781) TTS (NM_001271781) 6205 NR_038286 100507062 Hs.152536 NR_038286 ENSG00000239653 PSMD6-AS2 - PSMD6 antisense RNA 2 ncRNA 218-256 chr5 9082144 9082287 + 2 NA intron (NM_003966, intron 16 of 22) intron (NM_003966, intron 16 of 22) -28320 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 335-190 chr16 73506193 73506462 + 2 NA Intergenic Intergenic 119522 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 457-206 chr5 102563347 102563762 + 2 NA Intergenic L1MA4|LINE|L1 -17814 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 295-46 chr10 44505518 44505711 + 2 NA Intergenic Intergenic -120517 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 590-50 chr14 70543749 70544206 + 2 NA Intergenic LTR19A|LTR|ERV1 -8973 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 263-332 chr5 114864074 114864264 + 2 NA Intergenic L1PB1|LINE|L1 -90756 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 368-314 chr3 189664200 189664473 + 2 NA intron (NM_003722, intron 1 of 13) intron (NM_003722, intron 1 of 13) 32947 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 440-189 chr5 9195888 9196238 + 2 NA intron (NM_003966, intron 10 of 22) MIRb|SINE|MIR -142168 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 506-176 chr3 10542324 10542778 + 2 NA intron (NM_001353564, intron 1 of 20) L1MD2|LINE|L1 -36965 NM_001683 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 243-335 chr4 110154844 110155077 + 2 NA intron (NM_001130721, intron 2 of 4) intron (NM_001130721, intron 2 of 4) 43655 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 198-53 chr12 61583518 61583678 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 609241 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 457-98 chr18 70841639 70841916 + 2 NA Intergenic LTR8|LTR|ERV1 -190823 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 589-30 chr14 42600228 42600605 + 2 NA Intergenic Intergenic 993560 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 236-386 chr9 81378437 81378604 + 2 NA Intergenic Intergenic 311015 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 154-66 chr21 38242984 38243070 + 2 NA intron (NM_001276438, intron 1 of 2) MIRc|SINE|MIR 13101 NM_001276438 3772 Hs.411299 NM_002243 ENSG00000157551 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium voltage-gated channel subfamily J member 15 protein-coding 419-171 chr22 35211692 35211985 + 2 NA intron (NR_126356, intron 1 of 5) MLT1L|LTR|ERVL-MaLR 19218 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 147-28 chr15 56641782 56641918 + 2 NA intron (NM_001002843, intron 19 of 20) L1M4a1|LINE|L1 92236 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 279-314 chr5 24450708 24450910 + 2 NA Intergenic Intergenic 194169 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 374-404 chr8 136771146 136771464 + 2 NA intron (NR_147196, intron 2 of 5) intron (NR_147196, intron 2 of 5) 240507 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 237-144 chr17_KI270730v1_random 90996 91177 + 2 NA NA (GGAAT)n|Simple_repeat|Simple_repeat NA NA 384-217 chr3 14291799 14292156 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 60591 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 282-413 chr6 128841330 128841558 + 2 NA Intergenic Intergenic -41694 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 116-51 chr8 141276360 141276435 + 2 NA Intergenic Intergenic -21768 NM_001286646 57210 Hs.372492 NM_001080431 ENSG00000022567 SLC45A4 - solute carrier family 45 member 4 protein-coding 283-7 chr1 61030410 61030599 + 2 NA Intergenic L2c|LINE|L2 -46723 NM_001145511 4774 Hs.740757 NM_005595 ENSG00000162599 NFIA BRMUTD|CTF|NF-I/A|NF1-A|NFI-A|NFI-L nuclear factor I A protein-coding 400-215 chr3 63089527 63089881 + 2 NA Intergenic Intergenic -12984 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 510-98 chr16 49729089 49729594 + 2 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) -65017 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 378-444 chr8 130395531 130395874 + 2 NA intron (NM_001247996, intron 2 of 30) AluSx1|SINE|Alu 47958 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 535-230 chr7 109310771 109311245 + 2 NA Intergenic L1PA15|LINE|L1 -426421 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 377-108 chr13 91969363 91969649 + 2 NA intron (NM_004466, intron 6 of 7) L1MA9|LINE|L1 382701 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 328-527 chr7 34311097 34311348 + 2 NA Intergenic Intergenic -346996 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 205-76 chr14 28369220 28369400 + 2 NA Intergenic Intergenic 396009 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 413-153 chr2 151554379 151554739 + 2 NA intron (NM_001271208, intron 125 of 182) AluJo|SINE|Alu 144657 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 426-23 chr10 26448181 26448579 + 2 NA intron (NM_019043, intron 2 of 14) MER33|DNA|hAT-Charlie 10039 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 203-129 chr2 224250926 224251093 + 2 NA Intergenic Intergenic 150985 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 723-73 chr8 50455052 50455768 + 2 NA intron (NR_135797, intron 8 of 20) intron (NR_135797, intron 8 of 20) 291279 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 290-242 chr20 20260029 20260299 + 2 NA intron (NM_015585, intron 20 of 26) intron (NM_015585, intron 20 of 26) -107940 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 352-216 chr2 9037986 9038283 + 2 NA Intergenic L1MB7|LINE|L1 -34450 NR_135601 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 418-295 chr8 131685440 131685844 + 2 NA Intergenic Intergenic -218451 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 235-334 chr7 80369371 80369551 + 2 NA Intergenic LTR16A1|LTR|ERVL 4978 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 268-64 chr11 37022858 37023011 + 2 NA Intergenic Intergenic -424655 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 395-231 chr3 117885499 117885770 + 2 NA Intergenic Intergenic -194709 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 296-68 chr10 121985588 121985843 + 2 NA Intergenic HAL1ME|LINE|L1 -3448 NM_001291876 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 224-184 chr22 26273967 26274126 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 104572 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 253-114 chr13 37577743 37577910 + 2 NA intron (NM_001286667, intron 15 of 18) intron (NM_001286667, intron 15 of 18) 20942 NM_001286665 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 209-238 chr4 141483601 141483755 + 2 NA Intergenic LTR12_|LTR|ERV1 -151061 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 446-252 chr5 152876364 152876709 + 2 NA intron (NR_109877, intron 2 of 4) L1PA15|LINE|L1 95813 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 669-49 chr2 51856974 51857450 + 2 NA intron (NR_135237, intron 6 of 10) intron (NR_135237, intron 6 of 10) -513436 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 164-98 chr5 104382664 104382806 + 2 NA Intergenic Intergenic -716739 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 384-119 chr15 56288416 56288768 + 2 NA Intergenic L1M2|LINE|L1 -43510 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 268-95 chr12 86582775 86582956 + 2 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 162284 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 421-228 chr4 181794932 181795336 + 2 NA Intergenic Intergenic 34839 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 222-388 chr9 82683085 82683285 + 2 NA Intergenic Intergenic 379957 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 154-59 chr20 50945706 50945811 + 2 NA TTS (NR_110007) TTS (NR_110007) 12806 NM_001317036 8813 Hs.654951 NM_003859 ENSG00000000419 DPM1 CDGIE|MPDS dolichyl-phosphate mannosyltransferase subunit 1, catalytic protein-coding 537-178 chr4 92183829 92184189 + 2 NA Intergenic Intergenic 93293 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 350-521 chr8 101901668 101901880 + 2 NA intron (NM_001040624, intron 4 of 7) intron (NM_001040624, intron 4 of 7) -82658 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 392-124 chr18 57712716 57713050 + 2 NA intron (NM_005603, intron 2 of 27) L1M1|LINE|L1 82552 NM_001242804 100505549 Hs.660645 NM_001242804 LOC100505549 - uncharacterized LOC100505549 protein-coding 373-130 chr15 62261019 62261247 + 2 NA Intergenic MER51A|LTR|ERV1 -12338 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 290-138 chr14 79713603 79713770 + 2 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) 434306 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 217-135 chr16 9995118 9995241 + 2 NA intron (NM_001134408, intron 2 of 13) L2a|LINE|L2 186888 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 386-40 chr10 83591637 83591955 + 2 NA Intergenic L1M4a2|LINE|L1 85293 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 523-18 chr1 213929079 213929454 + 2 NA intron (NR_037850, intron 2 of 5) intron (NR_037850, intron 2 of 5) 4517 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 336-372 chr3 95796576 95796836 + 2 NA Intergenic Intergenic -113513 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 311-187 chr16 83094314 83094557 + 2 NA intron (NM_001220489, intron 3 of 12) LTR16|LTR|ERVL -104137 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 400-307 chr6 50304379 50304753 + 2 NA Intergenic Intergenic -254637 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 222-391 chr9 105088688 105088880 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -155821 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 129-61 chr4 99871134 99871224 + 2 NA TTS (NM_014395) TTS (NM_014395) 23248 NM_021970 8649 Hs.433332 NM_021970 ENSG00000109270 LAMTOR3 MAP2K1IP1|MAPBP|MAPKSP1|MP1|PRO0633|Ragulator3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 protein-coding 313-498 chr7 52844706 52844982 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -190789 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 474-237 chr5 97465452 97465919 + 2 NA Intergenic LTR25-int|LTR|ERV1 -39011 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 278-21 chr1 220947549 220947692 + 2 NA Intergenic L1ME3A|LINE|L1 -67480 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 372-370 chr4 97420466 97420696 + 2 NA intron (NR_102713, intron 1 of 5) LTR16A|LTR|ERVL 53655 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 796-57 chr8 86817307 86817873 + 2 NA Intergenic Intergenic -48825 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 407-312 chr7 144592724 144593004 + 2 NA intron (NM_022445, intron 6 of 8) intron (NM_022445, intron 6 of 8) 146034 NR_146936 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 182-74 chr18 4067580 4067701 + 2 NA intron (NM_001242761, intron 2 of 11) MER4D1|LTR|ERV1 105287 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 395-247 chr4 32583397 32583747 + 2 NA Intergenic Intergenic 232534 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 306-258 chr2 181708683 181708866 + 2 NA Intergenic Intergenic -28109 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 217-35 chr10 33271659 33271865 + 2 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 62905 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 292-18 chr1 95260621 95260897 + 2 NA Intergenic L1ME3B|LINE|L1 26549 NM_015485 25950 Hs.483512 NM_015485 ENSG00000122481 RWDD3 RSUME RWD domain containing 3 protein-coding 352-112 chr12 89188910 89189197 + 2 NA Intergenic L1MA8|LINE|L1 163448 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 276-201 chr18 42324866 42325099 + 2 NA intron (NR_046457, intron 4 of 6) intron (NR_046457, intron 4 of 6) 138314 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 387-19 chr1 187576071 187576386 + 2 NA Intergenic L2|LINE|L2 132600 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 277-291 chr4 87523900 87524156 + 2 NA intron (NM_001128310, intron 1 of 11) intron (NM_001128310, intron 1 of 11) 5475 NM_004684 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 428-45 chr12 23735761 23736077 + 2 NA intron (NM_152989, intron 8 of 17) L2a|LINE|L2 -151333 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 193-32 chr11 12442721 12442868 + 2 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 65223 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 357-132 chr15 70896854 70897147 + 2 NA intron (NM_001363732, intron 4 of 15) L2a|LINE|L2 4557 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 217-119 chr14 69959571 69959696 + 2 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -18500 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 199-132 chr2 188963221 188963342 + 2 NA Intergenic Intergenic -11092 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 384-316 chr6 71040566 71040826 + 2 NA Intergenic MER84|LTR|ERV1 -83636 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 595-23 chr10 118387404 118387957 + 2 NA Intergenic L1MB4|LINE|L1 30572 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 321-184 chr14 87212187 87212411 + 2 NA Intergenic L1MB7|LINE|L1 306521 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 421-161 chr20 3521249 3521589 + 2 NA intron (NM_001323332, intron 1 of 25) L1ME2|LINE|L1 50401 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 454-89 chr14 62528816 62529082 + 2 NA Intergenic Intergenic -388976 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 379-385 chr9 110427337 110427616 + 2 NA intron (NM_153366, intron 36 of 47) L4_C_Mam|LINE|RTE-X -89592 NM_001286947 255220 Hs.147064 NM_001003936 ENSG00000204193 TXNDC8 SPTRX-3|SPTRX3|TRX6|bA427L11.2 thioredoxin domain containing 8 protein-coding 358-475 chr8 82538030 82538218 + 2 NA Intergenic AluSz|SINE|Alu -373980 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 243-255 chr20 44662178 44662388 + 2 NA intron (NR_034104, intron 2 of 4) intron (NR_034104, intron 2 of 4) 9456 NR_034104 79015 Hs.671450 NM_024049 ENSG00000283440 LINC01260 - long intergenic non-protein coding RNA 1260 ncRNA 338-102 chr11 70614973 70615264 + 2 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) -15976 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 277-216 chr2 237049012 237049157 + 2 NA intron (NR_135202, intron 6 of 6) L1MEc|LINE|L1 7083 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 413-288 chr8 4257382 4257781 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 737333 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 588-52 chr17 50864700 50865196 + 2 NA intron (NM_001243877, intron 2 of 2) intron (NM_001243877, intron 2 of 2) 1406 NM_001243885 10140 Hs.703321 NM_005749 ENSG00000141232 TOB1 APRO5|APRO6|PIG49|TOB|TROB|TROB1 transducer of ERBB2, 1 protein-coding 464-262 chr8 133429993 133430390 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -132887 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 794-20 chr16 78252962 78253708 + 2 NA intron (NM_001291997, intron 4 of 7) MIR|SINE|MIR 153681 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 312-557 chrX 35088855 35089096 + 2 NA Intergenic Intergenic 146179 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 294-333 chr4 58438044 58438291 + 2 NA Intergenic Intergenic 98161 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 214-199 chr22 48406491 48406655 + 2 NA Intergenic L1MC3|LINE|L1 -82980 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 375-249 chr22 19511667 19511891 + 2 NA intron (NR_161281, intron 13 of 16) L1MB8|LINE|L1 12631 NM_001363066 7122 Hs.505337 NM_003277 ENSG00000184113 CLDN5 AWAL|BEC1|CPETRL1|TMDVCF|TMVCF claudin 5 protein-coding 419-103 chr16 25043041 25043282 + 2 NA Intergenic L1ME4b|LINE|L1 11420 NR_038379 554206 Hs.552959 NR_038379 ENSG00000262587 LOC554206 - leucine carboxyl methyltransferase 1 pseudogene pseudo 165-121 chr7 53710501 53710632 + 2 NA intron (NR_038371, intron 4 of 5) L1ME1|LINE|L1 101365 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 416-69 chr11 50450506 50450792 + 2 NA Intergenic ALR/Alpha|Satellite|centr 41502 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 367-396 chr6 77392412 77392673 + 2 NA Intergenic Intergenic 71480 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 314-46 chr1 229478508 229478790 + 2 NA intron (NM_018230, intron 12 of 25) intron (NM_018230, intron 12 of 25) 29692 NM_018230 55746 Hs.12457 NM_018230 ENSG00000069248 NUP133 GAMOS8|NPHS18|hNUP133 nucleoporin 133 protein-coding 481-157 chr2 166013147 166013500 + 2 NA intron (NR_148667, intron 20 of 28) intron (NR_148667, intron 20 of 28) 55905 NR_110598 102724058 Hs.570269 NR_110598 ENSG00000236107 LOC102724058 - uncharacterized LOC102724058 ncRNA 297-422 chr6 160311024 160311196 + 2 NA Intergenic AluJr|SINE|Alu -37268 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 561-94 chr2 56665526 56666029 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -480007 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 240-237 chr2 146831466 146831629 + 2 NA Intergenic Intergenic 244490 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 225-19 chr1 216321881 216322048 + 2 NA exon (NM_007123, exon 9 of 21) exon (NM_007123, exon 9 of 21) 101432 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 230-3 chr1 33190459 33190651 + 2 NA Intergenic Intergenic -8512 NM_018207 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 260-109 chr12 124440939 124441138 + 2 NA intron (NM_001077261, intron 9 of 47) L2a|LINE|L2 -103796 NR_106940 102466204 NR_106940 ENSG00000275967 MIR6880 hsa-mir-6880 microRNA 6880 ncRNA 312-318 chr3 7537336 7537580 + 2 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) -2174 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 269-157 chr17 65368862 65369069 + 2 NA Intergenic AluSx3|SINE|Alu -88576 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 263-295 chr4 85388455 85388675 + 2 NA Intergenic Intergenic -86585 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 329-598 chr8 136160807 136161107 + 2 NA Intergenic Intergenic -369841 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 270-106 chr14 45351894 45352148 + 2 NA Intergenic Intergenic -98819 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 297-156 chr16 34587471 34587678 + 2 NA Intergenic Intergenic -206094 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 333-118 chr12 85756375 85756671 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 79886 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 531-210 chr6 24310173 24310666 + 2 NA intron (NM_016356, intron 2 of 9) intron (NM_016356, intron 2 of 9) -46484 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 418-169 chr3 159485525 159485770 + 2 NA intron (NM_001197108, intron 1 of 6) MIRb|SINE|MIR 203001 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 361-283 chr3 67196541 67196770 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -28809 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 218-298 chr7 13082616 13082776 + 2 NA Intergenic Intergenic 395063 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 340-488 chr6 151591830 151592074 + 2 NA intron (NM_025059, intron 7 of 10) (AAGTGGC)n|Simple_repeat|Simple_repeat 97935 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 344-170 chr16 12871789 12872017 + 2 NA Intergenic Intergenic -29695 NM_001145205 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 304-158 chr15 58270012 58270201 + 2 NA Intergenic LTR41B|LTR|ERVL 131725 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 278-57 chr11 102513593 102513758 + 2 NA Intergenic HAL1ME|LINE|L1 17072 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 172-113 chr6 83830987 83831142 + 2 NA Intergenic Intergenic -22202 NM_001009994 134701 Hs.149454 NM_001009994 ENSG00000203877 RIPPLY2 C6orf159|SCDO6|dJ237I15.1 ripply transcriptional repressor 2 protein-coding 134-8 chr1 227642716 227642823 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 54938 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 637-65 chr2 106688546 106689059 + 2 NA Intergenic L2a|LINE|L2 197226 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 345-27 chr1 181633566 181633800 + 2 NA intron (NM_001205293, intron 6 of 47) AluSx1|SINE|Alu 150166 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 560-191 chr8 134990141 134990521 + 2 NA Intergenic Intergenic 140396 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 390-277 chr4 182518226 182518582 + 2 NA intron (NM_001080477, intron 3 of 27) MLT1E|LTR|ERVL-MaLR 275002 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 244-14 chr1 118755022 118755236 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 233214 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 356-508 chr9 103477564 103477794 + 2 NA Intergenic L3|LINE|CR1 -152646 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 480-48 chr11 82133492 82133902 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) -242861 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 326-474 chr6 155638737 155638924 + 2 NA Intergenic LTR40a|LTR|ERVL 123986 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 536-14 chr1 113494058 113494450 + 2 NA intron (NM_001142782, intron 1 of 20) L1PA13|LINE|L1 103739 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 182-12 chr1 194099261 194099402 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 794586 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 518-12 chr1 197707142 197707497 + 2 NA intron (NR_125340, intron 3 of 19) L1MA5|LINE|L1 68161 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 313-72 chr10 131850619 131850912 + 2 NA Intergenic Intergenic -50243 NM_001291310 55844 Hs.380372 NM_018461 ENSG00000175470 PPP2R2D B55D|B55delta|MDS026 protein phosphatase 2 regulatory subunit Bdelta protein-coding 290-295 chr3 150705716 150705904 + 2 NA intron (NR_121674, intron 1 of 3) intron (NR_121674, intron 1 of 3) 1835 NR_121674 101928085 Hs.561114 NR_121674 ENSG00000240137 ERICH6-AS1 - ERICH6 antisense RNA 1 ncRNA 162-69 chr2 206371832 206371988 + 2 NA Intergenic L1MA7|LINE|L1 -71622 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 356-83 chr11 69024089 69024333 + 2 NA Intergenic AluSz6|SINE|Alu -10829 NM_001098515 116535 Hs.118513 NM_145015 ENSG00000172935 MRGPRF GPR140|GPR168|MRGF|RTA MAS related GPR family member F protein-coding 307-438 chr6 157388728 157389017 + 2 NA intron (NM_024630, intron 1 of 8) L1ME3F|LINE|L1 7682 NM_024630 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 196-190 chr4 79135047 79135181 + 2 NA intron (NR_038342, intron 3 of 5) L1PA14|LINE|L1 163366 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 188-9 chr1 107661370 107661499 + 2 NA intron (NM_006113, intron 19 of 26) L2c|LINE|L2 27065 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 135-17 chr14 48985270 48985342 + 2 NA Intergenic Intergenic 601074 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 442-6 chr1 56863010 56863321 + 2 NA intron (NM_000562, intron 1 of 10) intron (NM_000562, intron 1 of 10) 8395 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 595-177 chrX 88858960 88859450 + 2 NA Intergenic L1PA15|LINE|L1 111980 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 141-59 chr3 126907881 126907994 + 2 NA intron (NM_032343, intron 5 of 7) MIRb|SINE|MIR -80657 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 305-374 chr4 33399968 33400219 + 2 NA Intergenic L1MA3|LINE|L1 639800 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 347-3 chr1 14806614 14806920 + 2 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -117362 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 316-395 chr4 64627778 64627990 + 2 NA Intergenic L1ME1|LINE|L1 -218424 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 215-317 chr8 117267241 117267408 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 132329 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 123-36 chr4 63119796 63119892 + 2 NA Intergenic Intergenic -958079 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 177-98 chr21 27809327 27809471 + 2 NA Intergenic Intergenic 87020 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 507-21 chr1 227279094 227279437 + 2 NA intron (NM_001366019, intron 1 of 36) intron (NM_001366019, intron 1 of 36) 39227 NM_003607 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 388-271 chr5 29578792 29578991 + 2 NA Intergenic L1P4|LINE|L1 -182915 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 336-237 chr19 12091525 12091724 + 2 NA promoter-TSS (NM_001348163) promoter-TSS (NM_001348163) -673 NM_001348164 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 452-260 chr8 4384580 4384833 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 610208 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 459-200 chr3 195846945 195847264 + 2 NA intron (NR_134939, intron 1 of 1) L2b|LINE|L2 7124 NR_134940 101929697 Hs.551750 NR_134939 LINC01983 - long intergenic non-protein coding RNA 1983 ncRNA 323-256 chr2 82978624 82978835 + 2 NA Intergenic L1M4|LINE|L1 121926 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 472-349 chrX 20019120 20019430 + 2 NA intron (NM_152780, intron 9 of 15) AluJb|SINE|Alu -2088 NR_037414 100500809 NR_037414 ENSG00000264566 MIR23C hsa-mir-23c|mir-23c microRNA 23c ncRNA 275-177 chr2 29503825 29503987 + 2 NA intron (NM_004304, intron 4 of 28) L2a|LINE|L2 -28529 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 526-161 chr22 47282599 47282967 + 2 NA Intergenic Intergenic -62788 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 407-295 chr7 53986205 53986535 + 2 NA Intergenic MIR|SINE|MIR -174439 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 358-42 chr10 43507556 43507865 + 2 NA Intergenic Intergenic 60749 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 490-18 chr1 112093396 112093839 + 2 NA Intergenic Intergenic 103081 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 640-5 chr1 150744632 150745081 + 2 NA intron (NM_001199739, intron 6 of 6) L2b|LINE|L2 20922 NM_004079 1520 Hs.181301 NM_004079 ENSG00000163131 CTSS - cathepsin S protein-coding 132-86 chr8 64736035 64736130 + 2 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 62655 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 586-105 chr3 159488969 159489447 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 206562 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 265-260 chr4 37021585 37021786 + 2 NA TTS (NR_134669) TTS (NR_134669) 19906 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 198-121 chr2 63294979 63295115 + 2 NA intron (NR_148704, intron 14 of 18) L1M4c|LINE|L1 142960 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 283-375 chr5 115046298 115046474 + 2 NA Intergenic Intergenic 123522 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 289-154 chr15 79289396 79289604 + 2 NA intron (NM_001146341, intron 1 of 1) intron (NM_001146341, intron 1 of 1) -5555 NR_038997 729911 Hs.513931 NR_038997 ENSG00000259234 ANKRD34C-AS1 - ANKRD34C antisense RNA 1 ncRNA 275-37 chr10 30246707 30246866 + 2 NA Intergenic MER33|DNA|hAT-Charlie 34934 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 265-168 chr2 8844124 8844384 + 2 NA Intergenic L1ME4a|LINE|L1 -6641 NM_001348738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 375-217 chr2 121704992 121705219 + 2 NA intron (NR_037857, intron 2 of 3) AluSx1|SINE|Alu 31770 NM_032390 84365 Hs.367842 NM_032390 ENSG00000155438 NIFK MKI67IP|Nopp34 nucleolar protein interacting with the FHA domain of MKI67 protein-coding 163-112 chr6 159785695 159785802 + 2 NA promoter-TSS (NR_002965) promoter-TSS (NR_002965) -15 NR_002965 677812 Hs.363137 NR_002965 ENSG00000206910 SNORA29 ACA29 small nucleolar RNA, H/ACA box 29 snoRNA 658-129 chr8 137866237 137866740 + 2 NA intron (NR_161374, intron 2 of 7) AluSp|SINE|Alu 217057 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 378-158 chr16 52529086 52529418 + 2 NA intron (NM_001146188, intron 1 of 7) intron (NM_001146188, intron 1 of 7) 17891 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 582-58 chr18 2497976 2498341 + 2 NA Intergenic Intergenic 73347 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 540-10 chr1 75569425 75569842 + 2 NA intron (NM_152697, intron 1 of 23) L2b|LINE|L2 41481 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 341-391 chr4 108251428 108251677 + 2 NA Intergenic Intergenic 79432 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 583-155 chr7 104754031 104754522 + 2 NA intron (NM_199000, intron 2 of 2) L1ME5|LINE|L1 49816 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 462-240 chr5 157002320 157002649 + 2 NA Intergenic Intergenic -39258 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 310-558 chr9 102539848 102540132 + 2 NA intron (NR_103830, intron 1 of 4) ERVL-int|LTR|ERVL 20353 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 577-134 chr4 85204390 85204770 + 2 NA Intergenic L1PA10|LINE|L1 237096 NR_152782 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 289-88 chr11 103595061 103595313 + 2 NA Intergenic Intergenic -254719 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 331-180 chr16 994567 994757 + 2 NA Intergenic L2c|LINE|L2 12892 NM_014587 30812 Hs.243678 NM_014587 ENSG00000005513 SOX8 - SRY-box transcription factor 8 protein-coding 317-273 chr20 24884379 24884609 + 2 NA Intergenic L1MB3|LINE|L1 -64775 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 545-144 chr3 97464948 97465330 + 2 NA intron (NM_001080448, intron 7 of 17) L4_B_Mam|LINE|RTE-X 25532 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 246-74 chr11 83365050 83365242 + 2 NA Intergenic MER4D|LTR|ERV1 -78739 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 281-61 chr11 39633102 39633261 + 2 NA Intergenic Intergenic 659949 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 224-57 chr11 129146457 129146658 + 2 NA intron (NM_001142685, intron 2 of 21) intron (NM_001142685, intron 2 of 21) 45641 NM_001142685 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 130-70 chr6 9867314 9867422 + 2 NA Intergenic L1MC5a|LINE|L1 -537134 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 351-222 chr2 82739134 82739346 + 2 NA Intergenic (ATATTT)n|Simple_repeat|Simple_repeat -117563 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 223-327 chr7 110717791 110717936 + 2 NA intron (NM_001350963, intron 5 of 5) L2|LINE|L2 -373143 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 270-137 chr16 9994201 9994376 + 2 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 187779 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 367-278 chr3 34520471 34520678 + 2 NA Intergenic HERV9N-int|LTR|ERV1 721944 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 339-581 chr8 107385773 107385945 + 2 NA intron (NM_001199859, intron 1 of 8) L1PREC2|LINE|L1 -49344 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 306-132 chr13 111551788 111551986 + 2 NA Intergenic Intergenic -44122 NR_135814 105370369 NR_135814 ENSG00000215881 LINC02337 - long intergenic non-protein coding RNA 2337 ncRNA 504-153 chr21 22758554 22758908 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -320553 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 297-297 chr3 102943629 102943891 + 2 NA Intergenic Intergenic 508745 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 610-75 chr18 72832237 72832810 + 2 NA intron (NM_001354018, intron 4 of 11) intron (NM_001354018, intron 4 of 11) 20859 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 266-190 chr2 114350879 114351132 + 2 NA Intergenic L2a|LINE|L2 -91636 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 189-161 chr5 59631030 59631203 + 2 NA intron (NM_001165899, intron 3 of 16) MIRb|SINE|MIR -43491 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 348-456 chr6 81474525 81474871 + 2 NA Intergenic Intergenic 277983 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 278-169 chr18 6537977 6538245 + 2 NA intron (NR_120518, intron 2 of 5) Arthur1|DNA|hAT-Tip100 26695 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 276-152 chr14 72899469 72899694 + 2 NA Intergenic L2c|LINE|L2 -5465 NM_001280542 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 570-88 chr16 79502757 79503306 + 2 NA Intergenic Intergenic 97706 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 296-367 chr5 46220067 46220243 + 2 NA Intergenic ALR/Alpha|Satellite|centr -523775 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 290-11 chr1 80827947 80828217 + 2 NA Intergenic MLT2A2|LTR|ERVL 186795 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 710-84 chr7 4845229 4845763 + 2 NA intron (NM_018059, intron 2 of 14) L1ME4a|LINE|L1 -8046 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 211-10 chr1 116482160 116482316 + 2 NA Intergenic Intergenic -3412 NR_125973 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 609-21 chr12 6683852 6684280 + 2 NA intron (NM_001135734, intron 2 of 10) MIR|SINE|MIR 5309 NM_133476 171017 Hs.103315 NM_133476 ENSG00000126746 ZNF384 CAGH1|CAGH1A|CIZ|ERDA2|NMP4|NP|TNRC1 zinc finger protein 384 protein-coding 571-31 chr11 85782380 85782796 + 2 NA intron (NM_001365826, intron 1 of 18) THE1C-int|LTR|ERVL-MaLR -24519 NM_001162951 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 374-274 chr4 45509230 45509526 + 2 NA Intergenic L1MB1|LINE|L1 614676 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 356-316 chr3 11762636 11762906 + 2 NA Intergenic Intergenic -42232 NM_014667 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 374-203 chr2 139742943 139743263 + 2 NA Intergenic MER57B2|LTR|ERV1 843582 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 243-307 chr3 181249088 181249227 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 17420 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 137-24 chr14 53382191 53382309 + 2 NA Intergenic Intergenic 228896 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 123-14 chr12 62138306 62138369 + 2 NA intron (NM_178539, intron 1 of 4) L2a|LINE|L2 54502 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 415-68 chr14 31654066 31654354 + 2 NA intron (NM_001201573, intron 2 of 8) Tigger1|DNA|TcMar-Tigger -60359 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 452-258 chr7 110756360 110756688 + 2 NA intron (NM_001350963, intron 5 of 5) L2c|LINE|L2 -334482 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 267-122 chr15 52333410 52333575 + 2 NA intron (NM_001142495, intron 32 of 39) MIR3|SINE|MIR -37688 NM_018728 55930 Hs.487036 NM_018728 ENSG00000128833 MYO5C - myosin VC protein-coding 266-305 chr4 125771153 125771365 + 2 NA Intergenic Intergenic 264000 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 247-210 chr2 122705770 122705918 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 367637 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 210-63 chr13 29089615 29089768 + 2 NA intron (NM_001366651, intron 4 of 14) L1PA15|LINE|L1 65234 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 317-391 chr5 63776732 63776994 + 2 NA Intergenic Intergenic 185429 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 317-137 chr14 32626723 32626948 + 2 NA intron (NM_004274, intron 7 of 13) L2b|LINE|L2 297537 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 357-192 chr2 41796127 41796476 + 2 NA Intergenic L1MC2|LINE|L1 -81254 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 412-279 chr6 66715732 66716105 + 2 NA Intergenic L1MB7|LINE|L1 928039 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 669-99 chr7 4859107 4859731 + 2 NA 3' UTR (NM_020144, exon 1 of 1) 3' UTR (NM_020144, exon 1 of 1) 2611 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 330-372 chr4 17229578 17229885 + 2 NA Intergenic L1MEf|LINE|L1 -43674 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 555-169 chr5 155221383 155221803 + 2 NA Intergenic Intergenic 207838 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 199-124 chr2 143983930 143984099 + 2 NA intron (NM_001354353, intron 7 of 9) intron (NM_001354353, intron 7 of 9) 46947 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 560-132 chr4 163318392 163318765 + 2 NA Intergenic L1MC3|LINE|L1 14018 NM_000909 4886 Hs.519057 NM_000909 ENSG00000164128 NPY1R NPY1-R|NPYR neuropeptide Y receptor Y1 protein-coding 442-119 chr19 56604110 56604411 + 2 NA intron (NR_163263, intron 2 of 4) L1MA10|LINE|L1 8958 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 315-49 chr10 39328941 39329202 + 2 NA Intergenic ALR/Alpha|Satellite|centr 632475 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 293-435 chr8 82875626 82875838 + 2 NA Intergenic Intergenic -36372 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 289-213 chr2 25596663 25596902 + 2 NA intron (NM_001351393, intron 4 of 17) intron (NM_001351393, intron 4 of 17) 53440 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 488-146 chr2 143700968 143701340 + 2 NA intron (NM_018460, intron 12 of 13) intron (NM_018460, intron 12 of 13) -235913 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 269-405 chr8 82421103 82421302 + 2 NA Intergenic Intergenic -490902 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 300-271 chr3 48314767 48315008 + 2 NA intron (NM_001080525, intron 3 of 4) L1M4|LINE|L1 1572 NR_031749 100313840 NR_031749 ENSG00000252466 MIR2115 - microRNA 2115 ncRNA 352-208 chr19 30192944 30193135 + 2 NA Intergenic L1PA4|LINE|L1 -179345 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 300-282 chr3 97172047 97172277 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -267445 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 335-223 chr19 50032099 50032330 + 2 NA intron (NM_015428, intron 2 of 4) intron (NM_015428, intron 2 of 4) 6209 NM_015428 25888 Hs.440553 NM_015428 ENSG00000142528 ZNF473 ZFP100|ZN473 zinc finger protein 473 protein-coding 343-177 chr16 35872449 35872716 + 2 NA Intergenic AluSx3|SINE|Alu 126030 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 660-25 chr14 37979769 37980221 + 2 NA Intergenic L1M8|LINE|L1 -77871 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 489-52 chr12 38521281 38521678 + 2 NA Intergenic Intergenic 204705 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 277-162 chr18 49677572 49677805 + 2 NA Intergenic MIR|SINE|MIR 115631 NM_001308006 9388 Hs.465102 NM_006033 ENSG00000101670 LIPG EDL|EL|PRO719 lipase G, endothelial type protein-coding 321-257 chr18 78749880 78750065 + 2 NA Intergenic L1ME4b|LINE|L1 -230303 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 148-83 chr7 10848727 10848845 + 2 NA Intergenic Intergenic -68842 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 547-163 chr4 87259093 87259496 + 2 NA Intergenic FAM|SINE|Alu -38676 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 610-66 chr16 87816430 87816990 + 2 NA Intergenic Intergenic 17950 NR_106833 102465464 NR_106833 ENSG00000278598 MIR6775 hsa-mir-6775 microRNA 6775 ncRNA 395-217 chr3 30392324 30392712 + 2 NA Intergenic L2c|LINE|L2 -126350 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 276-478 chr9 73705060 73705257 + 2 NA Intergenic L1MB8|LINE|L1 553293 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 386-179 chr2 103338398 103338717 + 2 NA Intergenic L1MA4|LINE|L1 -354128 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 524-150 chr3 25870248 25870627 + 2 NA intron (NR_034055, intron 3 of 7) intron (NR_034055, intron 3 of 7) 3258 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 412-310 chr7 68339548 68339808 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie 319425 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 363-411 chr7 33488635 33488833 + 2 NA intron (NM_001348037, intron 18 of 20) L2c|LINE|L2 359170 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 410-43 chr10 111901882 111902242 + 2 NA Intergenic Intergenic 281703 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 619-122 chr7 64985224 64985627 + 2 NA intron (NM_001348050, intron 1 of 3) intron (NM_001348050, intron 1 of 3) 5611 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 339-289 chr2 174987438 174987707 + 2 NA intron (NR_038133, intron 1 of 11) AluSg4|SINE|Alu 17681 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 164-115 chr8 127805920 127806056 + 2 NA intron (NR_003367, intron 1 of 8) L1M5|LINE|L1 10026 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 322-462 chr6 76025426 76025681 + 2 NA intron (NM_001563, intron 4 of 16) intron (NM_001563, intron 4 of 16) 47109 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 549-160 chr5 27007654 27008117 + 2 NA intron (NM_016279, intron 1 of 11) Charlie4a|DNA|hAT-Charlie 30701 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 254-41 chr10 72988987 72989214 + 2 NA Intergenic L1MD|LINE|L1 -34294 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 255-316 chr5 9460750 9460966 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) -50475 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 220-102 chr13 80109593 80109746 + 2 NA Intergenic Intergenic 98592 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 481-113 chr16 73237273 73237659 + 2 NA Intergenic AluJr|SINE|Alu -93019 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 332-413 chr5 52549246 52549513 + 2 NA Intergenic Intergenic -238537 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 530-151 chr20 55370543 55370946 + 2 NA Intergenic Intergenic -52299 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 287-194 chr2 66214084 66214315 + 2 NA Intergenic Intergenic 144129 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 351-170 chr17 35520283 35520604 + 2 NA intron (NM_001363830, intron 2 of 4) MER49|LTR|ERV1 17418 NM_001363830 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 525-31 chr10 78814932 78815276 + 2 NA Intergenic Intergenic 252344 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 344-450 chr7 9270449 9270653 + 2 NA Intergenic L2a|LINE|L2 -363719 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 371-300 chr5 8030546 8030854 + 2 NA Intergenic L1MDa|LINE|L1 161552 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 526-133 chr2 108079296 108079642 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -26714 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 362-355 chr5 112512317 112512673 + 2 NA Intergenic L1MB7|LINE|L1 92912 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 557-221 chr9 116411050 116411422 + 2 NA Intergenic Intergenic -10630 NR_103711 493913 Hs.728832 NR_103711 ENSG00000256040 PAPPA-AS1 DIPAS|NCRNA00156|PAPPA-AS|PAPPAAS|PAPPAS|TAF2C2|TAF4B|TAFII105 PAPPA antisense RNA 1 ncRNA 423-20 chr10 16267960 16268337 + 2 NA Intergenic Intergenic -168795 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 459-255 chr6 18812952 18813189 + 2 NA Intergenic L2c|LINE|L2 241286 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 237-181 chr2 81884503 81884691 + 2 NA Intergenic Intergenic -417651 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 505-299 chr8 29838408 29838846 + 2 NA Intergenic L1MC4|LINE|L1 -10123 NR_125817 101929470 Hs.204721 NR_125817 ENSG00000248964 LOC101929470 - uncharacterized LOC101929470 ncRNA 339-344 chr22 48873922 48874238 + 2 NA intron (NR_038944, intron 1 of 6) L1M5|LINE|L1 7310 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 350-252 chr2 156743930 156744266 + 2 NA Intergenic AluSq2|SINE|Alu 307719 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 312-413 chr5 45846623 45846837 + 2 NA Intergenic L2a|LINE|L2 -150350 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 286-412 chr7 33781989 33782253 + 2 NA Intergenic Intergenic -122794 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 417-214 chr5 39431798 39432161 + 2 NA Intergenic L1ME3C|LINE|L1 -6746 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 209-248 chr5 26474664 26474832 + 2 NA Intergenic Intergenic 563838 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 687-85 chr4 42242267 42242700 + 2 NA Intergenic MIR|SINE|MIR -89828 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 555-212 chr8 139463831 139464197 + 2 NA Intergenic (AATTAA)n|Simple_repeat|Simple_repeat 239109 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 322-230 chr2 7757650 7757896 + 2 NA Intergenic L2c|LINE|L2 141882 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 263-415 chr8 63692106 63692264 + 2 NA Intergenic Intergenic -77245 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 142-53 chr3 16654933 16655058 + 2 NA Intergenic Intergenic -49572 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 241-61 chr11 27022061 27022271 + 2 NA Intergenic L1ME3G|LINE|L1 -18649 NM_003986 8424 Hs.591996 NM_003986 ENSG00000129151 BBOX1 BBH|BBOX|G-BBH|gamma-BBH gamma-butyrobetaine hydroxylase 1 protein-coding 226-88 chr14 37911869 37912009 + 2 NA Intergenic L1ME3G|LINE|L1 -9815 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 395-122 chr16 56937278 56937604 + 2 NA intron (NM_001010989, intron 4 of 7) intron (NM_001010989, intron 4 of 7) 5299 NM_001272103 9709 Hs.146393 NM_014685 ENSG00000051108 HERPUD1 HERP|Mif1|SUP homocysteine inducible ER protein with ubiquitin like domain 1 protein-coding 360-112 chr14 22151314 22151558 + 2 NA Intergenic MER67C|LTR|ERV1 281317 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 255-437 chr8 126252897 126253145 + 2 NA Intergenic MIR|SINE|MIR -72474 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 243-336 chr4 122918851 122919056 + 2 NA intron (NM_198041, intron 1 of 4) L1ME2z|LINE|L1 3644 NM_007083 11162 Hs.558459 NM_007083 ENSG00000170917 NUDT6 ASFGF2|FGF-AS|FGF2AS|GFG-1|GFG1 nudix hydrolase 6 protein-coding 556-47 chr12 15499543 15499975 + 2 NA intron (NM_030667, intron 4 of 26) intron (NM_030667, intron 4 of 26) -46852 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 339-600 chr8 144990810 144991038 + 2 NA intron (NR_023392, intron 4 of 4) L1PA8|LINE|L1 -3941 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 361-4 chr1 34198672 34198877 + 2 NA intron (NM_032884, intron 2 of 6) intron (NM_032884, intron 2 of 6) 21867 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 221-10 chr1 97761757 97761959 + 2 NA intron (NM_000110, intron 3 of 22) L1PA15|LINE|L1 -35063 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 303-252 chr20 44812329 44812531 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -1884 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 142-20 chr14 38484931 38485033 + 2 NA Intergenic L1MA3|LINE|L1 -228889 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 747-56 chr5 153275955 153276444 + 2 NA Intergenic Intergenic -214325 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 548-68 chr14 48772567 48773022 + 2 NA Intergenic MIRb|SINE|MIR 813586 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 650-134 chr8 139939143 139939576 + 2 NA intron (NM_001160372, intron 19 of 22) intron (NM_001160372, intron 19 of 22) 161176 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 630-147 chr9 12041930 12042402 + 2 NA Intergenic LOR1b|LTR|ERV1 -651219 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 130-48 chr21 22532426 22532551 + 2 NA Intergenic Intergenic 433871 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 230-87 chr12 83217843 83218043 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger 530788 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 235-357 chr8 86317674 86317824 + 2 NA Intergenic Intergenic -24798 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 345-354 chr3 97159063 97159244 + 2 NA intron (NM_001080448, intron 3 of 17) ERVL-B4-int|LTR|ERVL -280454 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 343-3 chr1 17784397 17784584 + 2 NA intron (NM_030812, intron 1 of 2) intron (NM_030812, intron 1 of 2) 29157 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 389-58 chr11 32875172 32875462 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -17494 NM_001076786 79832 Hs.369368 NM_024774 ENSG00000060749 QSER1 - glutamine and serine rich 1 protein-coding 468-223 chr4 71449641 71450043 + 2 NA intron (NM_003759, intron 6 of 22) Plat_L3|LINE|CR1 110789 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 469-142 chr2 124638901 124639293 + 2 NA intron (NM_130773, intron 12 of 23) intron (NM_130773, intron 12 of 23) 613810 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 839-39 chr5 40116082 40116625 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 64062 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 329-291 chr2 147985520 147985801 + 2 NA intron (NM_001190879, intron 1 of 14) intron (NM_001190879, intron 1 of 14) 35077 NM_001190882 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 326-557 chr8 133915757 133915925 + 2 NA Intergenic Intergenic 29345 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 460-151 chr2 154952198 154952591 + 2 NA Intergenic UCON25|Unknown|Unknown 253699 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 261-256 chr3 144584263 144584485 + 2 NA Intergenic Intergenic 611293 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 306-565 chrX 117296588 117296825 + 2 NA Intergenic Intergenic -478846 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 322-416 chr5 24812715 24812948 + 2 NA Intergenic Intergenic 27752 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 511-266 chr8 120258620 120259055 + 2 NA intron (NM_021110, intron 23 of 47) intron (NM_021110, intron 23 of 47) 133735 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 441-195 chr5 24015180 24015425 + 2 NA intron (NR_131245, intron 4 of 4) MLT1A|LTR|ERVL-MaLR 63954 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 304-322 chr3 2596146 2596323 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -295981 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 270-229 chr3 2789778 2790023 + 2 NA intron (NM_175607, intron 6 of 24) intron (NM_175607, intron 6 of 24) -102315 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 483-38 chr11 46262879 46263335 + 2 NA Intergenic MIR|SINE|MIR -14555 NM_052854 90993 Hs.405961 NM_052854 ENSG00000157613 CREB3L1 OASIS|OI16 cAMP responsive element binding protein 3 like 1 protein-coding 256-104 chr13 57817271 57817456 + 2 NA Intergenic L2a|LINE|L2 185619 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 332-460 chr6 122496078 122496267 + 2 NA intron (NM_001270393, intron 3 of 7) L1PA15-16|LINE|L1 24255 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 215-162 chr2 185019443 185019633 + 2 NA Intergenic Intergenic 147534 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 292-312 chr4 41746631 41746813 + 2 NA intron (NM_003924, intron 2 of 2) intron (NM_003924, intron 2 of 2) 2248 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 369-180 chr19 56327717 56327979 + 2 NA intron (NM_001322072, intron 2 of 6) intron (NM_001322072, intron 2 of 6) -13009 NM_001322061 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 511-13 chr1 172783791 172784150 + 2 NA Intergenic L1MA2|LINE|L1 124867 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 274-169 chr18 3995017 3995180 + 2 NA intron (NR_102696, intron 2 of 4) intron (NR_102696, intron 2 of 4) 32745 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 268-408 chr8 112718299 112718506 + 2 NA intron (NM_001363185, intron 11 of 66) (CTCAA)n|Simple_repeat|Simple_repeat 74909 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 331-310 chr20 2013543 2013806 + 2 NA Intergenic L1ME1|LINE|L1 -19389 NM_001190899 5173 Hs.22584 NM_024411 ENSG00000101327 PDYN ADCA|PENKB|SCA23 prodynorphin protein-coding 255-262 chr3 84047334 84047488 + 2 NA Intergenic MER41-int|LTR|ERV1 822164 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 372-155 chr14 87560633 87560898 + 2 NA Intergenic Intergenic 94529 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 388-359 chr8 142277575 142277791 + 2 NA intron (NM_001366901, intron 11 of 13) intron (NM_001366901, intron 11 of 13) 79327 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 424-59 chr12 133070130 133070499 + 2 NA Intergenic Intergenic -9889 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 929 chr1 40473864 40474598 + 2 NA Intergenic L1ME3A|LINE|L1 -3059 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 432-275 chr7 71001538 71001848 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -130451 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 541-203 chr6 103226776 103227154 + 2 NA Intergenic LTR28C|LTR|ERV1 1632581 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 392-339 chr8 129084222 129084421 + 2 NA Intergenic Intergenic -118320 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 436-186 chr3 88388743 88389096 + 2 NA intron (NM_001368167, intron 2 of 2) L2a|LINE|L2 50463 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 262-414 chr8 11098444 11098665 + 2 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) -31465 NR_134308 101929269 Hs.680442 NR_134308 ENSG00000254839 LOC101929269 - uncharacterized LOC101929269 ncRNA 433-200 chr4 46288575 46288927 + 2 NA intron (NM_001114175, intron 7 of 8) L1PA13|LINE|L1 100628 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 390-4 chr1 34311867 34312088 + 2 NA Intergenic L1PA15|LINE|L1 135070 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 409-279 chr7 35286146 35286463 + 2 NA Intergenic Intergenic -27551 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 195-53 chr12 44721268 44721399 + 2 NA intron (NM_006159, intron 10 of 20) intron (NM_006159, intron 10 of 20) 154328 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 403-152 chr2 46095379 46095709 + 2 NA intron (NM_005400, intron 11 of 14) HAL1|LINE|L1 -201863 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 381-50 chr10 61643831 61644117 + 2 NA Intergenic Intergenic -18955 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 623-14 chr10 88093688 88094174 + 2 NA Intergenic Intergenic 230306 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 309-129 chr13 64147793 64147982 + 2 NA Intergenic Intergenic -71876 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 432-227 chr5 101150821 101151168 + 2 NA Intergenic Intergenic -247712 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 232-259 chr4 14213441 14213589 + 2 NA Intergenic Intergenic 101547 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 308-198 chr18 46580545 46580818 + 2 NA intron (NM_144612, intron 12 of 39) intron (NM_144612, intron 12 of 39) -21369 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 258-301 chr4 158244261 158244459 + 2 NA intron (NM_018342, intron 12 of 12) intron (NM_018342, intron 12 of 12) 33874 NM_018342 55314 Hs.176227 NM_018342 ENSG00000164124 TMEM144 - transmembrane protein 144 protein-coding 471-257 chr7 123385526 123385964 + 2 NA Intergenic L2a|LINE|L2 147203 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 213-152 chr2 183735505 183735701 + 2 NA Intergenic L1MC5a|LINE|L1 611160 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 212-123 chr17 53684054 53684172 + 2 NA Intergenic L1PREC2|LINE|L1 -138814 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 360-17 chr1 194572128 194572479 + 2 NA Intergenic Intergenic 1267558 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 331-512 chr7 146484667 146484906 + 2 NA Intergenic Intergenic -289485 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 219-157 chr19 52161507 52161661 + 2 NA intron (NM_001102657, intron 3 of 4) MLT1A1|LTR|ERVL-MaLR 10037 NM_001102657 162962 Hs.631584 NM_001102657 ENSG00000196267 ZNF836 - zinc finger protein 836 protein-coding 307-284 chr22 29961869 29962114 + 2 NA intron (NM_153051, intron 2 of 18) Tigger3c|DNA|TcMar-Tigger -45058 NR_106876 102466742 NR_106876 ENSG00000275818 MIR6818 hsa-mir-6818 microRNA 6818 ncRNA 416-87 chr12 16571333 16571724 + 2 NA intron (NR_045014, intron 2 of 3) MER94|DNA|hAT-Blackjack 33851 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 536-175 chr4 119565976 119566444 + 2 NA intron (NM_033437, intron 4 of 20) intron (NM_033437, intron 4 of 20) 61527 NM_033430 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 293-269 chr3 100044126 100044375 + 2 NA intron (NM_001042459, intron 1 of 4) L2b|LINE|L2 70263 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 683-33 chr19 40027648 40028114 + 2 NA TTS (NM_001005851) TTS (NM_001005851) 28350 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 406-295 chr8 88008353 88008617 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -134470 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 559-190 chr8 121015116 121015500 + 2 NA Intergenic MLT1N2-int|LTR|ERVL-MaLR -203262 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 853-14 chr19 9379044 9379727 + 2 NA intron (NM_001172650, intron 9 of 11) intron (NM_001172650, intron 9 of 11) 3069 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 320-425 chr5 23500986 23501201 + 2 NA Intergenic L1M2|LINE|L1 -6516 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 212-37 chr10 43742815 43742970 + 2 NA Intergenic L2a|LINE|L2 35933 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 188-29 chr11 96338382 96338563 + 2 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -2966 NR_036125 100422991 NR_036125 ENSG00000266192 MIR1260B mir-1260b microRNA 1260b ncRNA 389-23 chr10 13098259 13098617 + 2 NA intron (NM_001282658, intron 3 of 6) AluJb|SINE|Alu 1551 NM_001282658 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 677-4 chr1 49237631 49238022 + 2 NA intron (NM_001323575, intron 4 of 12) L1MDa|LINE|L1 -19585 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 167-105 chr6 143347483 143347645 + 2 NA Intergenic L1ME4b|LINE|L1 95113 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 347-537 chr8 137921377 137921663 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 162025 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 301-409 chr6 165041674 165041878 + 2 NA Intergenic Intergenic -219713 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 399-201 chr3 20801379 20801618 + 2 NA Intergenic L1MA5A|LINE|L1 459030 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 203-210 chr7 2180738 2180863 + 2 NA intron (NM_001013837, intron 10 of 18) L1M4|LINE|L1 52145 NM_003550 8379 Hs.654838 NM_003550 ENSG00000002822 MAD1L1 MAD1|PIG9|TP53I9|TXBP181 mitotic arrest deficient 1 like 1 protein-coding 330-447 chr5 163104510 163104757 + 2 NA Intergenic Intergenic -332938 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 343-555 chr8 122221109 122221346 + 2 NA Intergenic Intergenic 347417 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 281-252 chr20 1487725 1487912 + 2 NA intron (NM_001122962, intron 1 of 4) L1ME1|LINE|L1 3602 NM_001122962 284759 Hs.721685 NM_001122962 ENSG00000196209 SIRPB2 PTPN1L|PTPNS1L3|dJ776F14.2 signal regulatory protein beta 2 protein-coding 168-85 chr5 17093798 17093903 + 2 NA Intergenic AluJb|SINE|Alu 62142 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 343-533 chr8 48329060 48329377 + 2 NA Intergenic Intergenic -222349 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 198-198 chr5 68070968 68071127 + 2 NA Intergenic Intergenic -118829 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 195-185 chr5 15019383 15019560 + 2 NA Intergenic Intergenic -147693 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 418-159 chr3 74042005 74042364 + 2 NA Intergenic Intergenic 232940 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 553-101 chr2 8043161 8043556 + 2 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -66544 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 199-100 chr2 19258291 19258449 + 2 NA Intergenic Intergenic -90059 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 164-89 chr4 88839040 88839138 + 2 NA intron (NM_014883, intron 7 of 23) intron (NM_014883, intron 7 of 23) -15728 NM_001265579 10144 Hs.97270 NM_014883 ENSG00000138640 FAM13A ARHGAP48|FAM13A1 family with sequence similarity 13 member A protein-coding 436-155 chr2 238411938 238412336 + 2 NA Intergenic Intergenic -14790 NM_001040445 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 131-69 chr7 8223817 8223917 + 2 NA intron (NM_001350838, intron 4 of 11) intron (NM_001350838, intron 4 of 11) 38185 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 195-149 chr3 89742752 89742885 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 635197 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 333-113 chr12 39937360 39937688 + 2 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 168557 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 495-166 chr3 177295700 177296161 + 2 NA intron (NR_047465, intron 1 of 1) L1MC1|LINE|L1 1488 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 129-69 chr7 26355940 26356061 + 2 NA intron (NM_001362753, intron 3 of 8) MIRb|SINE|MIR -4884 NM_001199837 29887 Hs.741316 NM_013322 ENSG00000086300 SNX10 OPTB8 sorting nexin 10 protein-coding 464-41 chr12 16418410 16418764 + 2 NA Intergenic Intergenic 65170 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 316-99 chr11 50503490 50503779 + 2 NA Intergenic ALR/Alpha|Satellite|centr 94487 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 305-104 chr11 97932593 97932829 + 2 NA Intergenic Intergenic -1088238 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 275-154 chr18 5654196 5654426 + 2 NA Intergenic Intergenic -25320 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 297-442 chr7 67903223 67903444 + 2 NA Intergenic LTR16E1|LTR|ERVL -116920 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 350-556 chr9 101462425 101462629 + 2 NA Intergenic Intergenic -5912 NR_121576 101928470 Hs.656088 NR_121573 ENSG00000225376 TMEM246-AS1 - TMEM246 antisense RNA 1 ncRNA 269-308 chr5 30688179 30688372 + 2 NA Intergenic Intergenic -505411 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 765-25 chr19 34760492 34761108 + 2 NA intron (NM_001007248, intron 3 of 3) intron (NM_001007248, intron 3 of 3) 12415 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 313-452 chr5 158651776 158652030 + 2 NA Intergenic Intergenic -242130 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 358-178 chr19 31734522 31734754 + 2 NA Intergenic Intergenic 142357 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 336-211 chr17 52511182 52511397 + 2 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 120767 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 408-303 chr6 132022134 132022385 + 2 NA Intergenic Intergenic -70887 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 285-256 chr22 48393437 48393644 + 2 NA Intergenic AluSx|SINE|Alu -96013 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 520-58 chr11 113212174 113212625 + 2 NA intron (NM_181351, intron 7 of 18) intron (NM_181351, intron 7 of 18) 61502 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 594-164 chr9 94858114 94858515 + 2 NA intron (NM_032823, intron 5 of 14) intron (NM_032823, intron 5 of 14) 48352 NR_031755 100313780 NR_031755 ENSG00000252153 MIR2278 mir-2278 microRNA 2278 ncRNA 361-316 chr4 36236620 36236910 + 2 NA intron (NR_146894, intron 1 of 32) intron (NR_146894, intron 1 of 32) 7174 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 289-24 chr1 167633261 167633513 + 2 NA intron (NM_001322923, intron 1 of 5) intron (NM_001322923, intron 1 of 5) 3155 NM_052862 92241 Hs.493867 NM_052862 ENSG00000198771 RCSD1 CAPZIP|MK2S4 RCSD domain containing 1 protein-coding 330-516 chr8 81441251 81441527 + 2 NA 3' UTR (NM_001348381, exon 3 of 3) 3' UTR (NM_001348381, exon 3 of 3) 6050 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 419-21 chr1 192778591 192778828 + 2 NA Intergenic L1PB1|LINE|L1 -30330 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 359-437 chr7 940161 940518 + 2 NA intron (NM_001284308, intron 1 of 10) (CA)n|Simple_repeat|Simple_repeat 5477 NM_001284309 11033 Hs.602573 NM_006869 ENSG00000105963 ADAP1 CENTA1|GCS1L|p42IP4 ArfGAP with dual PH domains 1 protein-coding 312-250 chr2 114385822 114386016 + 2 NA Intergenic Intergenic -56722 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 218-358 chr9 113026151 113026326 + 2 NA Intergenic Intergenic -14046 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 370-417 chr7 50076034 50076344 + 2 NA intron (NM_007009, intron 3 of 7) L1MA1|LINE|L1 17057 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 288-415 chr7 86056639 86056914 + 2 NA Intergenic L1PA15-16|LINE|L1 -587133 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 268-250 chr3 113638501 113638689 + 2 NA Intergenic L1MEg|LINE|L1 43719 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 261-165 chr19 28673794 28673952 + 2 NA intron (NR_110759, intron 5 of 9) L1MD3|LINE|L1 53821 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 173-147 chr9 95813153 95813279 + 2 NA non-coding (NR_023390, exon 3 of 3) non-coding (NR_023390, exon 3 of 3) -62475 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 579-55 chr17 70123739 70124201 + 2 NA intron (NM_001291622, intron 4 of 5) intron (NM_001291622, intron 4 of 5) 19125 NM_001291625 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 355-176 chr15 100513399 100513662 + 2 NA intron (NM_001290341, intron 3 of 13) L2c|LINE|L2 30756 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 301-267 chr22 28947480 28947697 + 2 NA intron (NM_032173, intron 1 of 8) L1M4|LINE|L1 30199 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 143-10 chr10 66640086 66640185 + 2 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -285901 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 195-264 chrX 69933027 69933210 + 2 NA intron (NM_001005609, intron 1 of 7) HAL1|LINE|L1 -89739 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 459-204 chr4 33120942 33121351 + 2 NA Intergenic MIRb|SINE|MIR 770108 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 327-25 chr1 216614405 216614570 + 2 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 108942 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 329-32 chr1 199778786 199778973 + 2 NA Intergenic Intergenic -248831 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 483-296 chrX 84501525 84501826 + 2 NA intron (NM_001177478, intron 1 of 9) intron (NM_001177478, intron 1 of 9) 778 NM_001177478 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 293-154 chr17 61011091 61011323 + 2 NA intron (NM_001353144, intron 16 of 25) intron (NM_001353144, intron 16 of 25) 333356 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 498-124 chr2 95188282 95188616 + 2 NA Intergenic Intergenic 22640 NM_001291605 7549 Hs.590916 NM_021088 ENSG00000275111 ZNF2 A1-5|ZNF661|Zfp661 zinc finger protein 2 protein-coding 259-177 chr19 34639285 34639498 + 2 NA intron (NR_027620, intron 1 of 3) intron (NR_027620, intron 1 of 3) -6482 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 407-269 chr5 180197778 180198031 + 2 NA intron (NM_175062, intron 1 of 13) intron (NM_175062, intron 1 of 13) 11307 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 253-290 chr4 36527665 36527833 + 2 NA intron (NR_149124, intron 3 of 4) L1MA4|LINE|L1 -101321 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 148-46 chr2 226448090 226448231 + 2 NA Intergenic Intergenic 210633 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 391-87 chr13 38297515 38297836 + 2 NA Intergenic L1M4|LINE|L1 -52176 NM_001286704 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 219-323 chr6 167101238 167101410 + 2 NA Intergenic Intergenic -10483 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 299-54 chr10 66077579 66077795 + 2 NA intron (NM_001127384, intron 14 of 17) intron (NM_001127384, intron 14 of 17) 506262 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 293-262 chr3 65107929 65108169 + 2 NA Intergenic Intergenic -420049 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 291-4 chr1 66476975 66477200 + 2 NA Intergenic Intergenic -56506 NM_001308203 84251 Hs.132121 NM_032291 ENSG00000118473 SGIP1 - SH3 domain GRB2 like endophilin interacting protein 1 protein-coding 373-239 chr20 48383970 48384212 + 2 NA Intergenic Intergenic 24180 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 153-39 chr16 58704572 58704681 + 2 NA Intergenic Intergenic -19856 NM_001369608 55238 Hs.10499 NM_018231 ENSG00000103042 SLC38A7 SNAT7 solute carrier family 38 member 7 protein-coding 507-217 chr6 55102561 55102901 + 2 NA Intergenic Intergenic -3729 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 345-319 chr21 24563364 24563687 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 134785 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 414-277 chr5 163639110 163639455 + 2 NA Intergenic Intergenic 133663 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 515-152 chr22 48314791 48315197 + 2 NA Intergenic L1MB3|LINE|L1 40630 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 402-82 chr14 57215687 57215905 + 2 NA intron (NM_006544, intron 15 of 17) L1M3|LINE|L1 53109 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 300-47 chr10 70030836 70031036 + 2 NA Intergenic L1MEc|LINE|L1 -21910 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 296-80 chr11 110483281 110483516 + 2 NA Intergenic L1ME1|LINE|L1 53450 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 489-148 chr2 161524000 161524351 + 2 NA Intergenic L1MDa|LINE|L1 -16273 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 157-41 chr14 88141850 88141984 + 2 NA Intergenic Intergenic -115605 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 301-129 chr15 27005429 27005683 + 2 NA intron (NM_001270873, intron 2 of 5) intron (NM_001270873, intron 2 of 5) 34375 NM_033223 2567 Hs.569475 NM_033223 ENSG00000182256 GABRG3 - gamma-aminobutyric acid type A receptor gamma3 subunit protein-coding 273-240 chr2 165564813 165565030 + 2 NA intron (NM_001172173, intron 3 of 6) MamRTE1|LINE|RTE-BovB -7415 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 286-393 chr6 85398514 85398681 + 2 NA intron (NR_134633, intron 3 of 3) L1PA15|LINE|L1 6205 NR_134633 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 495-42 chr12 16827362 16827703 + 2 NA Intergenic L1PA11|LINE|L1 -161215 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 235-45 chr10 70890595 70890715 + 2 NA Intergenic Intergenic -2090 NM_001323004 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 327-430 chr6 23423302 23423523 + 2 NA Intergenic L1PA16|LINE|L1 -702803 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 406-178 chr21 31838738 31839016 + 2 NA Intergenic Intergenic -34143 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 391-191 chr2 183100724 183100982 + 2 NA TTS (NM_001321519) TTS (NM_001321519) -16637 NM_001287584 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 399-74 chr12 111119587 111119982 + 2 NA intron (NM_001370598, intron 1 of 21) AluSx|SINE|Alu 19780 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 137-61 chr3 5675513 5675608 + 2 NA Intergenic Intergenic -425305 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 319-269 chr2 167383731 167383908 + 2 NA Intergenic Intergenic 196447 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 335-424 chr5 45656693 45656874 + 2 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 39597 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 285-230 chr2 198195422 198195701 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 179536 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 341-59 chr10 37832215 37832420 + 2 NA exon (NM_001352470, exon 6 of 6) exon (NM_001352470, exon 6 of 6) 25293 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 424-129 chr2 46855499 46855891 + 2 NA intron (NR_024452, intron 1 of 2) intron (NR_024452, intron 1 of 2) 27831 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 326-189 chr16 68555340 68555512 + 2 NA intron (NR_130976, intron 2 of 4) intron (NR_130976, intron 2 of 4) 16135 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 425-13 chr1 179458457 179458806 + 2 NA intron (NM_144696, intron 16 of 25) L1M5|LINE|L1 92587 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 525-235 chr7 14334684 14335041 + 2 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -343437 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 235-253 chr4 58508020 58508227 + 2 NA Intergenic Intergenic 28205 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 319-8 chr1 67544463 67544757 + 2 NA Intergenic L2c|LINE|L2 -114208 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 396-3 chr1 31553105 31553432 + 2 NA Intergenic L1MEg|LINE|L1 -23217 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 307-303 chr3 65108242 65108511 + 2 NA Intergenic Intergenic -420376 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 403-272 chr6 105462631 105462882 + 2 NA Intergenic Intergenic -59674 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 508-228 chr8 11084198 11084633 + 2 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) -17326 NR_134308 101929269 Hs.680442 NR_134308 ENSG00000254839 LOC101929269 - uncharacterized LOC101929269 ncRNA 426-172 chr3 808213 808526 + 2 NA intron (NR_110118, intron 2 of 3) MSTB-int|LTR|ERVL-MaLR 216264 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 767-7 chr11 13535505 13536098 + 2 NA Intergenic Intergenic -39626 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 630-128 chr7 53442363 53442805 + 2 NA Intergenic L1MC3|LINE|L1 369347 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 413-83 chr14 57933883 57934154 + 2 NA Intergenic Intergenic -67926 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 358-429 chr7 18237563 18237751 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -52435 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 197-45 chr12 9273778 9273945 + 2 NA Intergenic Intergenic -9796 NR_024374 642846 Hs.447869 NR_024374 LOC642846 - DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like ncRNA 438-259 chr7 52660681 52661011 + 2 NA Intergenic L1M4|LINE|L1 -374787 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 712-73 chr5 61066694 61067277 + 2 NA intron (NM_174889, intron 1 of 3) L1MA9|LINE|L1 -95331 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 339-268 chr2 103376466 103376679 + 2 NA Intergenic L1MA9|LINE|L1 -392143 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 452-127 chr2 62829697 62830128 + 2 NA intron (NM_001142615, intron 6 of 22) L1P5|LINE|L1 123015 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 377-399 chr8 72593469 72593688 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 56353 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 361-244 chr2 180585349 180585623 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -106618 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 237-389 chr8 122130872 122131038 + 2 NA Intergenic L1MA7|LINE|L1 437689 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 556-170 chr5 9988741 9989109 + 2 NA Intergenic Intergenic -85101 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 211-87 chr14 70004730 70004878 + 2 NA intron (NM_001034852, intron 7 of 11) MLT2C2|LTR|ERVL 26671 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 165-32 chr14 63364034 63364167 + 2 NA Intergenic Intergenic -45165 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 338-124 chr12 30300546 30300791 + 2 NA Intergenic Intergenic 376576 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 341-311 chr21 37577298 37577549 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 157124 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 223-147 chr2 37169795 37169996 + 2 NA intron (NM_001367551, intron 6 of 6) intron (NM_001367551, intron 6 of 6) -12848 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 351-247 chr2 181580643 181580847 + 2 NA intron (NR_027690, intron 2 of 11) L1M5|LINE|L1 76360 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 320-216 chr18 4004628 4004846 + 2 NA intron (NR_102696, intron 4 of 4) intron (NR_102696, intron 4 of 4) 42384 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 318-261 chr2 53683255 53683490 + 2 NA intron (NM_001201965, intron 8 of 8) L1MA3|LINE|L1 -84411 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 206-245 chr7 18328904 18329068 + 2 NA intron (NM_001321896, intron 1 of 12) L1M2|LINE|L1 38894 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 567-147 chr5 56307847 56308406 + 2 NA Intergenic MER77|LTR|ERVL -74796 NM_024669 79722 Hs.436214 NM_024669 ENSG00000164512 ANKRD55 - ankyrin repeat domain 55 protein-coding 309-2 chr1 36886778 36886961 + 2 NA intron (NM_000831, intron 2 of 15) L1ME3|LINE|L1 147646 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 262-279 chr3 77397213 77397460 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 299324 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 507-190 chr4 179743944 179744299 + 2 NA Intergenic Intergenic 1415028 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 155-84 chr5 165533196 165533318 + 2 NA Intergenic Intergenic 1062978 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 298-495 chr9 34453077 34453299 + 2 NA intron (NM_001184942, intron 1 of 5) intron (NM_001184942, intron 1 of 5) 5382 NM_147202 203259 Hs.493771 NM_147202 ENSG00000164970 FAM219A C9orf25 family with sequence similarity 219 member A protein-coding 360-316 chr3 160007718 160007906 + 2 NA non-coding (NR_108088, exon 6 of 10) non-coding (NR_108088, exon 6 of 10) -12837 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 409-203 chr3 108845077 108845467 + 2 NA intron (NM_001317747, intron 2 of 4) UCON84|Unknown|Unknown 22486 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 337-497 chr6 118944726 118944911 + 2 NA Intergenic L1M1|LINE|L1 -9656 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 310-336 chr3 100089291 100089517 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 25109 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 191-37 chr12 15231164 15231319 + 2 NA Intergenic L1ME3G|LINE|L1 -9824 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 237-42 chr10 123627802 123628006 + 2 NA Intergenic L1ME1|LINE|L1 -38451 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 408-81 chr12 44960654 44960983 + 2 NA Intergenic L1PA15|LINE|L1 -46890 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 225-260 chr5 4160780 4160950 + 2 NA Intergenic Intergenic 565033 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 465-281 chr8 20643349 20643673 + 2 NA Intergenic Intergenic -28585 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 321-318 chr2 205951876 205952065 + 2 NA Intergenic Intergenic 134204 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 302-216 chr2 84078418 84078632 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -212157 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 367-110 chr13 58071891 58072248 + 2 NA Intergenic HAL1|LINE|L1 -93758 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 355-263 chr2 180982392 180982613 + 2 NA intron (NM_001278555, intron 2 of 5) intron (NM_001278555, intron 2 of 5) 1378 NM_001278554 10477 Hs.470804 NM_006357 ENSG00000170035 UBE2E3 UBCH9|UbcM2 ubiquitin conjugating enzyme E2 E3 protein-coding 165-70 chr22 24950901 24951009 + 2 NA Intergenic L2a|LINE|L2 -4260 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 293-378 chr6 120053741 120053909 + 2 NA Intergenic MER89|LTR|ERV1 38646 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 233-82 chr12 132882371 132882554 + 2 NA intron (NM_018223, intron 2 of 17) L1ME1|LINE|L1 5156 NM_001161346 55743 Hs.720197 NM_018223 ENSG00000072609 CHFR RNF116|RNF196 checkpoint with forkhead and ring finger domains protein-coding 311-309 chr20 56146733 56146912 + 2 NA Intergenic L1MC1|LINE|L1 -101910 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 277-154 chr17 72789555 72789721 + 2 NA intron (NM_001352692, intron 6 of 9) L2b|LINE|L2 -149166 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 303-142 chr15 68855828 68856089 + 2 NA Intergenic L1MDa|LINE|L1 -35063 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 457-184 chr4 124375871 124376307 + 2 NA Intergenic L1ME3A|LINE|L1 182345 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 498-228 chr5 173594282 173594671 + 2 NA Intergenic Intergenic 14842 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 328-178 chr15 68493580 68493761 + 2 NA Intergenic Intergenic -24703 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 199-28 chr10 83484393 83484576 + 2 NA Intergenic L1MB2|LINE|L1 192605 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 342-531 chr8 124343599 124343852 + 2 NA intron (NM_194291, intron 1 of 6) MER57A-int|LTR|ERV1 28974 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 361-366 chr5 113862114 113862408 + 2 NA Intergenic L1M5|LINE|L1 348567 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 435-134 chr2 209017737 209018160 + 2 NA Intergenic Intergenic -406099 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 373-24 chr1 152376499 152376782 + 2 NA Intergenic L2c|LINE|L2 -16634 NM_001014342 388698 Hs.156124 NM_001014342 ENSG00000143520 FLG2 IFPS|PSS6 filaggrin family member 2 protein-coding 474-6 chr1 68644257 68644600 + 2 NA Intergenic Intergenic -147346 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 217-160 chr18 41140992 41141162 + 2 NA Intergenic Intergenic 379600 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 204-43 chr11 78408166 78408315 + 2 NA intron (NM_080491, intron 1 of 9) L1MD1|LINE|L1 9580 NM_080491 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 266-207 chr2 198127153 198127348 + 2 NA intron (NM_006226, intron 5 of 5) intron (NM_006226, intron 5 of 5) 247847 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 274-207 chr2 72418449 72418698 + 2 NA intron (NM_001321729, intron 18 of 22) L1M4c|LINE|L1 -270711 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 348-408 chr5 54728791 54729117 + 2 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) 15304 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 352-226 chr2 35739887 35740085 + 2 NA Intergenic L1PA11|LINE|L1 268581 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 215-248 chr5 22998392 22998548 + 2 NA Intergenic Intergenic -145126 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 428-268 chr7 13249836 13250190 + 2 NA Intergenic L1MA8|LINE|L1 562380 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 444-34 chr11 20227706 20228077 + 2 NA Intergenic Intergenic -67416 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 457-271 chr9 73634304 73634627 + 2 NA Intergenic L2b|LINE|L2 482600 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 582-127 chr5 117919967 117920445 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 189845 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 357-419 chr7 80621233 80621475 + 2 NA intron (NM_001371080, intron 1 of 10) intron (NM_001371080, intron 1 of 10) -2738 NM_001371077 343-397 chr4 93534583 93534779 + 2 NA intron (NM_001286838, intron 12 of 14) intron (NM_001286838, intron 12 of 14) -294072 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 369-100 chr13 108037382 108037586 + 2 NA Intergenic AluJo|SINE|Alu -169988 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 215-286 chr7 5560051 5560207 + 2 NA Intergenic AluJr|SINE|Alu -29528 NM_001101 60 Hs.520640 NM_001101 ENSG00000075624 ACTB BRWS1|PS1TP5BP1 actin beta protein-coding 360-232 chr2 125569469 125569796 + 2 NA Intergenic Intergenic 548353 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 270-360 chr7 45451701 45451868 + 2 NA Intergenic Tigger17b|DNA|TcMar-Tigger -122356 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 249-118 chr14 51344361 51344523 + 2 NA intron (NR_038358, intron 1 of 4) intron (NR_038358, intron 1 of 4) 11049 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 391-207 chr20 40841018 40841289 + 2 NA Intergenic LTR16E1|LTR|ERVL -126530 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 163-5 chr1 119982601 119982697 + 2 NA intron (NM_001200001, intron 5 of 21) intron (NM_001200001, intron 5 of 21) -86134 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 135-24 chr16 4181536 4181621 + 2 NA Intergenic Intergenic 60502 NM_001098814 6345 Hs.10041 NM_001098814 ENSG00000185739 SRL SAR sarcalumenin protein-coding 341-230 chr2 19321500 19321745 + 2 NA Intergenic AluY|SINE|Alu -26807 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 339-409 chr4 69482456 69482649 + 2 NA intron (NM_001297615, intron 4 of 4) L1ME3A|LINE|L1 13353 NM_001297615 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 503-95 chr14 58596728 58597097 + 2 NA Intergenic Intergenic -37156 NR_046093 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 324-240 chr19 34804033 34804307 + 2 NA Intergenic Intergenic 28699 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 336-201 chr16 74069044 74069224 + 2 NA Intergenic MER33|DNA|hAT-Charlie 146387 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 419-200 chr3 193297920 193298304 + 2 NA intron (NM_198505, intron 25 of 29) intron (NM_198505, intron 25 of 29) -9132 NR_046758 100874218 Hs.407490 NR_046758 ATP13A5-AS1 - ATP13A5 antisense RNA 1 ncRNA 314-7 chr1 35226765 35226988 + 2 NA Intergenic HAL1|LINE|L1 -33731 NR_136703 6421 Hs.355934 NM_005066 ENSG00000116560 SFPQ POMP100|PPP1R140|PSF splicing factor proline and glutamine rich protein-coding 385-47 chr11 30937042 30937248 + 2 NA intron (NM_001367979, intron 21 of 38) HERVP71A-int|LTR|ERV1 55541 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 265-135 chr16 13738817 13738998 + 2 NA Intergenic AluJb|SINE|Alu -181250 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 285-465 chrX 58315350 58315549 + 2 NA Intergenic ALR/Alpha|Satellite|centr -404816 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 212-346 chr9 40927500 40927674 + 2 NA Intergenic CER|Satellite|Satellite 1505 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 432-13 chr1 177521018 177521368 + 2 NA Intergenic L2a|LINE|L2 169607 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 198-252 chr8 129021300 129021416 + 2 NA Intergenic Intergenic -55357 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 215-323 chr8 131667857 131668011 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -236159 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 289-406 chr6 14237506 14237681 + 2 NA Intergenic MIR|SINE|MIR 47861 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 180-132 chr5 34725008 34725140 + 2 NA intron (NM_001145525, intron 4 of 19) intron (NM_001145525, intron 4 of 19) 37515 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 583-39 chr12 8984261 8984750 + 2 NA intron (NR_137427, intron 1 of 2) AluSz|SINE|Alu -5041 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 319-302 chr21 26809151 26809318 + 2 NA Intergenic Intergenic 36175 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 217-371 chr8 114296073 114296237 + 2 NA Intergenic L2a|LINE|L2 -859216 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 269-404 chr8 81442014 81442181 + 2 NA 3' UTR (NM_001348381, exon 3 of 3) 3' UTR (NM_001348381, exon 3 of 3) 5342 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 536-154 chr21 25471832 25472219 + 2 NA Intergenic Intergenic -40324 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 268-375 chr7 64251395 64251579 + 2 NA intron (NM_153363, intron 2 of 4) intron (NM_153363, intron 2 of 4) 23013 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 657-61 chr22 25900112 25900648 + 2 NA intron (NM_001318245, intron 29 of 43) intron (NM_001318245, intron 29 of 43) 158192 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 366-402 chr7 12897943 12898261 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 210469 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 504-246 chr7 117905524 117905896 + 2 NA Intergenic Intergenic -32269 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 326-134 chr13 23338128 23338437 + 2 NA exon (NM_001278055, exon 8 of 8) exon (NM_001278055, exon 8 of 8) 37226 NM_001278055 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 229-243 chr22 40168464 40168623 + 2 NA intron (NM_001024843, intron 4 of 23) intron (NM_001024843, intron 4 of 23) -9382 NM_001162501 23112 Hs.372082 NM_015088 ENSG00000100354 TNRC6B - trinucleotide repeat containing adaptor 6B protein-coding 447-63 chr13 58416041 58416361 + 2 NA Intergenic Intergenic -183084 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 196-273 chr9 100786638 100786754 + 2 NA Intergenic Intergenic 208617 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 388-335 chr7 144890407 144890769 + 2 NA Intergenic Intergenic -54535 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 364-389 chr6 104060838 104061140 + 2 NA Intergenic LTR48|LTR|ERV1 798557 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 420-244 chr5 149010657 149011064 + 2 NA intron (NM_024577, intron 13 of 16) MER113B|DNA|hAT-Charlie 51549 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 290-131 chr14 55555391 55555545 + 2 NA Intergenic L1ME4a|LINE|L1 24624 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 389-118 chr16 3919622 3919836 + 2 NA Intergenic Intergenic 30715 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 319-237 chr2 56124239 56124509 + 2 NA Intergenic MER83|LTR|ERV1 -33992 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 244-159 chr2 64197339 64197487 + 2 NA intron (NR_033837, intron 3 of 5) MARNA|DNA|TcMar-Mariner 8072 NR_033837 150992 Hs.272318 NR_033837 ENSG00000230923 LINC00309 NCRNA00309 long intergenic non-protein coding RNA 309 ncRNA 297-280 chr22 34853039 34853277 + 2 NA intron (NR_138042, intron 3 of 4) L1ME4b|LINE|L1 144758 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 386-78 chr12 98008416 98008731 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -13125 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 286-334 chr4_GL000008v2_random 3951 4115 + 2 NA Intergenic AluYj4|SINE|Alu 174138 NR_046228 100874392 Hs.648245 NR_046228 ANKRD20A12P - ankyrin repeat domain 20 family member A12, pseudogene pseudo 260-87 chr11 106682273 106682460 + 2 NA 3' UTR (NM_000855, exon 8 of 8) 3' UTR (NM_000855, exon 8 of 8) 336110 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 549-113 chr2 124724978 124725365 + 2 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 699884 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 392-95 chr15 63701096 63701323 + 2 NA intron (NM_003922, intron 25 of 77) MIR3|SINE|MIR -100382 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 342-276 chr20 6284712 6284957 + 2 NA Intergenic L2|LINE|L2 -141898 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 240-157 chr15 62355236 62355374 + 2 NA Intergenic MIRc|SINE|MIR 12276 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 298-188 chr19 28467220 28467494 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -139331 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 325-388 chr4 46041300 46041594 + 2 NA intron (NM_173536, intron 8 of 8) intron (NM_173536, intron 8 of 8) 82607 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 204-240 chr5 120411029 120411196 + 2 NA Intergenic L1M1|LINE|L1 -53166 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 360-259 chr20 6496724 6496949 + 2 NA intron (NR_109953, intron 3 of 3) intron (NR_109953, intron 3 of 3) 70104 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 336-65 chr10 42362467 42362638 + 2 NA intron (NR_024380, intron 1 of 2) MER21C|LTR|ERVL 5493 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 231-141 chr18 77773986 77774165 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 219652 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 242-367 chr7 38306815 38307001 + 2 NA Intergenic Intergenic -33261 NM_001003799 445347 Hs.534032 NM_001003799 TARP CD3G|TCRG|TCRGC1|TCRGC2|TCRGV TCR gamma alternate reading frame protein protein-coding 285-372 chr6 123051860 123052126 + 2 NA intron (NM_001010852, intron 4 of 5) intron (NM_001010852, intron 4 of 5) 55758 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 334-285 chr2 143710571 143710744 + 2 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -226410 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 321-185 chr14 87327078 87327254 + 2 NA Intergenic MIR|SINE|MIR 328128 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 450-303 chr8 103945522 103945908 + 2 NA intron (NR_145711, intron 11 of 21) L1MB7|LINE|L1 126495 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 392-220 chr3 186870517 186870728 + 2 NA Intergenic Intergenic -9254 NR_046662 100874095 Hs.638968 NR_046662 ENSG00000226482 ADIPOQ-AS1 - ADIPOQ antisense RNA 1 ncRNA 219-328 chr7 25340494 25340620 + 2 NA Intergenic MER99|DNA|hAT? -112071 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 437-152 chr2 200420323 200420660 + 2 NA intron (NM_001100424, intron 6 of 11) MER20B|DNA|hAT-Charlie 89577 NM_001321548 130535 Hs.605775 NM_152387 ENSG00000155729 KCTD18 6530404F10Rik potassium channel tetramerization domain containing 18 protein-coding 307-164 chr15 86767984 86768139 + 2 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -164819 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 397-266 chr5 136474767 136475017 + 2 NA Intergenic L1PB|LINE|L1 -109416 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 646-47 chr17 52988432 52988906 + 2 NA Intergenic Intergenic 3164 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 493-30 chr10 52915715 52916168 + 2 NA Intergenic LTR84b|LTR|ERVL -144241 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 424-77 chr15 25569540 25569762 + 2 NA Intergenic LTR48|LTR|ERV1 -130595 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 270-8 chr1 50912806 50913020 + 2 NA intron (NM_007051, intron 1 of 18) intron (NM_007051, intron 1 of 18) 47354 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 245-246 chr4 20295833 20295979 + 2 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) 44001 NM_001289135 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 244-240 chr3 153487738 153487933 + 2 NA intron (NR_160966, intron 2 of 2) intron (NR_160966, intron 2 of 2) 3340 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 217-293 chr5 56683390 56683568 + 2 NA Intergenic Intergenic -77223 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 350-430 chr6 34010450 34010715 + 2 NA Intergenic MIR|SINE|MIR -10531 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 463-277 chr8 32597424 32597682 + 2 NA intron (NM_001160001, intron 1 of 9) MIRc|SINE|MIR 1727 NM_001322202 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 339-70 chr10 93342679 93342851 + 2 NA intron (NM_013451, intron 38 of 53) L3b|LINE|CR1 139569 NM_013451 26509 Hs.602086 NM_013451 ENSG00000138119 MYOF FER1L3 myoferlin protein-coding 200-132 chr2 75654419 75654583 + 2 NA intron (NM_014763, intron 4 of 5) intron (NM_014763, intron 4 of 5) 7718 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 324-21 chr1 153246824 153247029 + 2 NA Intergenic Intergenic -12761 NM_000427 4014 Hs.251680 NM_000427 ENSG00000203782 LOR - loricrin protein-coding 372-387 chr5 13396957 13397289 + 2 NA Intergenic AluJb|SINE|Alu -364237 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 333-129 chr13 29054714 29055020 + 2 NA intron (NM_001366651, intron 4 of 14) L1ME1|LINE|L1 30410 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 274-367 chr7 137472360 137472597 + 2 NA intron (NM_001321710, intron 24 of 32) (AT)n|Simple_repeat|Simple_repeat -128745 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 198-233 chr7 67576506 67576695 + 2 NA Intergenic L1PA14|LINE|L1 240624 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 242-135 chr17 10537916 10538115 + 2 NA intron (NM_001100112, intron 14 of 39) intron (NM_001100112, intron 14 of 39) 11608 NM_001100112 4620 Hs.667534 NM_017534 ENSG00000125414 MYH2 IBM3|MYH2A|MYHSA2|MYHas8|MYPOP|MyHC-2A|MyHC-IIa myosin heavy chain 2 protein-coding 289-336 chr4 58183323 58183535 + 2 NA Intergenic Intergenic 352899 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 521-218 chr6 70779311 70779685 + 2 NA intron (NM_021940, intron 4 of 9) L1M2b|LINE|L1 110968 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 248-71 chr11 113934479 113934699 + 2 NA intron (NM_006028, intron 6 of 8) intron (NM_006028, intron 6 of 8) 25748 NM_001363563 9177 Hs.241377 NM_006028 ENSG00000149305 HTR3B 5-HT3B 5-hydroxytryptamine receptor 3B protein-coding 398-54 chr11 20927387 20927669 + 2 NA intron (NM_201551, intron 8 of 18) intron (NM_201551, intron 8 of 18) 257942 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 313-382 chr4 55575239 55575406 + 2 NA intron (NM_152401, intron 3 of 5) L1M4|LINE|L1 16923 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 336-279 chr2 104616291 104616536 + 2 NA Intergenic Intergenic -105904 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 699-83 chr5 88015962 88016406 + 2 NA Intergenic L1MEd|LINE|L1 252661 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 223-175 chr2 214223507 214223653 + 2 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -187474 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 271-391 chr6 133886795 133887063 + 2 NA intron (NR_109982, intron 1 of 8) intron (NR_109982, intron 1 of 8) 2077 NR_109982 100507308 Hs.102408 NR_109982 ENSG00000227954 TARID EYA4-AS1 TCF21 antisense RNA inducing promoter demethylation ncRNA 206-64 chr14 51931673 51931861 + 2 NA intron (NM_001243773, intron 2 of 3) L1MB2|LINE|L1 -13196 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 194-228 chr9 98004128 98004240 + 2 NA intron (NM_006401, intron 3 of 6) intron (NM_006401, intron 3 of 6) 20843 NM_006401 10541 Hs.730654 NM_006401 ENSG00000136938 ANP32B APRIL|PHAPI2|SSP29 acidic nuclear phosphoprotein 32 family member B protein-coding 261-355 chr7 63126870 63127044 + 2 NA Intergenic L1M2|LINE|L1 177099 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 354-185 chr18 46544389 46544580 + 2 NA intron (NM_001145472, intron 5 of 23) intron (NM_001145472, intron 5 of 23) 12285 NM_001308013 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 309-317 chr21 27382414 27382633 + 2 NA Intergenic Intergenic -339856 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 541-236 chr8 103316087 103316485 + 2 NA intron (NM_001317796, intron 2 of 5) HAL1|LINE|L1 7308 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 290-100 chr12 18629761 18629976 + 2 NA intron (NM_001288774, intron 31 of 32) intron (NM_001288774, intron 31 of 32) 107641 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 420-283 chr8 60149503 60149759 + 2 NA Intergenic L1MEg|LINE|L1 131769 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 284-122 chr14 78330365 78330626 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -73224 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 151-35 chr2 59475235 59475317 + 2 NA Intergenic L3|LINE|CR1 257568 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 454-77 chr12 105534145 105534535 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -169863 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 512-191 chr4 61093409 61093912 + 2 NA Intergenic Intergenic -49996 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 578-150 chr6 40776438 40776865 + 2 NA Intergenic (TGTGTA)n|Simple_repeat|Simple_repeat -189287 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 429-123 chr17 77976994 77977275 + 2 NA Intergenic L2c|LINE|L2 -27103 NM_018996 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 328-565 chr8 81930573 81930798 + 2 NA Intergenic L1MA2|LINE|L1 -88399 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 515-103 chr19 56817764 56818207 + 2 NA intron (NR_163142, intron 8 of 13) intron (NR_163142, intron 8 of 13) 5505 NR_023847 100169890 NR_023847 PEG3-AS1 APEG3|NCRNA00155|PEG3-AS|PEG3AS PEG3 antisense RNA 1 ncRNA 323-440 chr5 170757187 170757389 + 2 NA Intergenic Intergenic -26431 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 421-308 chr8 124062219 124062437 + 2 NA intron (NM_001039112, intron 25 of 40) L1ME5|LINE|L1 -21546 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 377-9 chr1 63610470 63610790 + 2 NA intron (NM_001172819, intron 1 of 10) intron (NM_001172819, intron 1 of 10) -12586 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 608-68 chr2 34950713 34951220 + 2 NA Intergenic L1PA17|LINE|L1 273409 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 233-43 chr10 73198372 73198516 + 2 NA intron (NM_173348, intron 5 of 13) L1M3|LINE|L1 30325 NM_173348 317662 Hs.408577 NM_173348 ENSG00000138286 FAM149B1 KIAA0974 family with sequence similarity 149 member B1 protein-coding 292-409 chr7 41742146 41742428 + 2 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -39197 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 442-308 chr9 11805885 11806319 + 2 NA Intergenic L1MA8|LINE|L1 -887283 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 239-245 chr3 87603494 87603616 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -189151 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 303-484 chr8 144850320 144850581 + 2 NA 3' UTR (NM_001081003, exon 2 of 2) 3' UTR (NM_001081003, exon 2 of 2) 2598 NM_001081004 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 287-103 chr11 127444047 127444301 + 2 NA Intergenic Intergenic 173104 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 214-253 chr5 3437282 3437447 + 2 NA intron (NR_033898, intron 2 of 4) intron (NR_033898, intron 2 of 4) -15452 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 495-126 chr2 227942963 227943346 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger 71523 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 265-53 chr11 4978492 4978720 + 2 NA Intergenic Intergenic -9585 NM_021801 56547 Hs.204732 NM_021801 ENSG00000167346 MMP26 - matrix metallopeptidase 26 protein-coding 547-228 chr8 10118061 10118438 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 22598 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 486-48 chr11 41770445 41770773 + 2 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 56041 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 441-143 chr20 28830739 28831122 + 2 NA Intergenic ALR/Alpha|Satellite|centr -228265 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 225-357 chr8 90243240 90243408 + 2 NA intron (NR_051989, intron 1 of 3) intron (NR_051989, intron 1 of 3) 21836 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 241-154 chr18 7097196 7097376 + 2 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 20511 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 282-336 chr4 43278378 43278597 + 2 NA Intergenic Intergenic 214056 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 291-115 chr14 28036226 28036465 + 2 NA Intergenic L1PA11|LINE|L1 -363124 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 294-372 chr5 43373157 43373310 + 2 NA Intergenic L1ME3A|LINE|L1 23904 NM_001301875 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 336-2 chr1 4997592 4997771 + 2 NA Intergenic Intergenic 343072 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 491-67 chr14 49741624 49741939 + 2 NA intron (NM_172193, intron 11 of 12) intron (NM_172193, intron 11 of 12) -26372 NM_014315 23588 Hs.509264 NM_014315 ENSG00000165516 KLHDC2 HCLP-1|HCLP1|LCP kelch domain containing 2 protein-coding 237-286 chr5 19859280 19859449 + 2 NA intron (NM_001349562, intron 2 of 13) MER4D1|LTR|ERV1 26908 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 731 chr1 35954635 35955050 + 2 NA intron (NM_177422, intron 2 of 16) intron (NM_177422, intron 2 of 16) 23737 NM_024852 192669 Hs.657659 NM_024852 ENSG00000126070 AGO3 EIF2C3 argonaute RISC catalytic component 3 protein-coding 355-524 chr8 139754273 139754529 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -51278 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 274-166 chr17 65807073 65807300 + 2 NA intron (NR_126542, intron 1 of 5) MSTA-int|LTR|ERVL-MaLR 19265 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 364-314 chr4 117415042 117415318 + 2 NA Intergenic Intergenic -13218 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 274-418 chrX 27085865 27086116 + 2 NA Intergenic MIR|SINE|MIR 377351 NM_207319 139420 Hs.350673 NM_207319 ENSG00000224960 PPP4R3C FLFL3P|PPP4R3CP|SMEK3P|smk1 protein phosphatase 4 regulatory subunit 3C protein-coding 334-49 chr10 36578234 36578442 + 2 NA Intergenic Intergenic -547519 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 239-419 chr8 127129560 127129745 + 2 NA Intergenic Intergenic -47431 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 656-51 chr2 36184497 36184946 + 2 NA Intergenic Intergenic 170849 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 490-158 chr2 161090144 161090475 + 2 NA Intergenic Intergenic -46646 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 431-300 chr8 125635649 125636023 + 2 NA Intergenic MIRc|SINE|MIR 203627 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 270-296 chr5 41260858 41261061 + 2 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 510 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 296-409 chr6 95950954 95951136 + 2 NA Intergenic L2a|LINE|L2 -64929 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 341-336 chr3 83480174 83480389 + 2 NA Intergenic L1MC3|LINE|L1 1389294 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 308-67 chr10 91643209 91643466 + 2 NA Intergenic Intergenic -10266 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 392-229 chr4 63330487 63330717 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1078848 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 518-55 chr11 80142514 80142891 + 2 NA Intergenic Intergenic 620101 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 330-479 chr7 11869348 11869604 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -37278 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 310-571 chrX 58352326 58352507 + 2 NA Intergenic ALR/Alpha|Satellite|centr -441783 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 199-156 chr3 5548380 5548532 + 2 NA Intergenic L2a|LINE|L2 -298201 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 454-328 chr8 139846064 139846506 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -143162 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 469-232 chr5 161842335 161842727 + 2 NA Intergenic Intergenic -4660 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 209-90 chr14 51671677 51671842 + 2 NA intron (NM_001267046, intron 1 of 13) HSMAR2|DNA|TcMar-Mariner 19849 NM_001267046 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 300-21 chr1 182521211 182521460 + 2 NA intron (NM_001366934, intron 10 of 22) AluJr4|SINE|Alu 67921 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 368-425 chr7 56544764 56545055 + 2 NA Intergenic L1MA6|LINE|L1 -6779 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 297-506 chr9 18896220 18896413 + 2 NA intron (NM_001040272, intron 26 of 28) L1ME3A|LINE|L1 136893 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 251-329 chr6 44980825 44980959 + 2 NA intron (NM_181356, intron 8 of 12) intron (NM_181356, intron 8 of 12) 216878 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 331-212 chr18 4321562 4321840 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 57099 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 189-192 chr7 94123809 94123965 + 2 NA Intergenic Intergenic -119532 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 607-18 chr10 13996912 13997390 + 2 NA intron (NM_018027, intron 2 of 24) intron (NM_018027, intron 2 of 24) 11399 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 285-58 chr11 31732985 31733173 + 2 NA intron (NM_001288726, intron 10 of 11) L1MB1|LINE|L1 67582 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 517-26 chr10 8720520 8720863 + 2 NA Intergenic Intergenic -126300 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 255-219 chr2 193547681 193547884 + 2 NA Intergenic L1PB1|LINE|L1 -796487 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 339-631 chrX 142669544 142669879 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -356217 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 396-18 chr1 108799099 108799412 + 2 NA intron (NM_007269, intron 16 of 18) intron (NM_007269, intron 16 of 18) 52581 NM_007269 6814 Hs.530436 NM_007269 ENSG00000116266 STXBP3 MUNC18-3|MUNC18C|PSP|UNC-18C syntaxin binding protein 3 protein-coding 314-437 chr4 114267162 114267446 + 2 NA Intergenic Intergenic -287657 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 512-52 chr11 101707511 101707941 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -123719 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 198-171 chr3 115495922 115496085 + 2 NA Intergenic HAL1ME|LINE|L1 -127507 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 734-83 chrX 67486192 67486718 + 2 NA Intergenic L1MC|LINE|L1 -57566 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 154-20 chr12 5147535 5147628 + 2 NA Intergenic L1ME1|LINE|L1 95570 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 184-40 chr11 80299176 80299349 + 2 NA Intergenic MIRb|SINE|MIR 463541 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 267-136 chr16 56087082 56087242 + 2 NA Intergenic Intergenic 103932 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 246-68 chr11 55661918 55662083 + 2 NA Intergenic (TCATT)n|Simple_repeat|Simple_repeat -3167 NM_001004704 219432 Hs.511921 NM_001004704 ENSG00000181903 OR4C6 OR11-138 olfactory receptor family 4 subfamily C member 6 protein-coding 209-67 chr12 13678155 13678326 + 2 NA intron (NM_000834, intron 3 of 12) LTR32|LTR|ERVL -301495 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 443-139 chr19 51670902 51671243 + 2 NA Intergenic L1ME3B|LINE|L1 -18362 NM_001316994 147650 Hs.467174 NM_207324 ENSG00000182310 SPACA6 LET7EH|LINC00085|NCRNA00085|SPACA6P sperm acrosome associated 6 protein-coding 145-70 chr6 3520223 3520340 + 2 NA Intergenic HAL1b|LINE|L1 -63722 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 205-222 chr5 57683494 57683693 + 2 NA Intergenic L2c|LINE|L2 32933 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 219-292 chr5 104183043 104183252 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -620358 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 432-120 chr2 22770625 22771052 + 2 NA Intergenic L1ME3A|LINE|L1 234359 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 319-446 chr6 13682220 13682479 + 2 NA intron (NM_005493, intron 2 of 13) L1MC5a|LINE|L1 29486 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 408-184 chr20 39511545 39511798 + 2 NA Intergenic L1MD2|LINE|L1 -286923 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 324-27 chr1 163427480 163427773 + 2 NA Intergenic Intergenic -4435 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 329-610 chr9 89760400 89760584 + 2 NA Intergenic Intergenic 120709 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 457-151 chr22 32676105 32676489 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -124519 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 419-26 chr1 239487022 239487369 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 100627 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 429-64 chr12 16892259 16892600 + 2 NA Intergenic MIR|SINE|MIR -96318 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 296-7 chr1 82732747 82732944 + 2 NA Intergenic Intergenic -170338 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 321-499 chr6 76515278 76515518 + 2 NA Intergenic Intergenic 78225 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 226-252 chr4 43641209 43641363 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -148743 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 377-145 chr16 12160412 12160777 + 2 NA intron (NM_032167, intron 13 of 20) L1MB7|LINE|L1 183860 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 292-90 chr12 14552147 14552402 + 2 NA intron (NM_024829, intron 2 of 10) intron (NM_024829, intron 2 of 10) -15458 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 195-116 chr2 144639492 144639682 + 2 NA Intergenic L1ME1|LINE|L1 -28380 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 423-56 chr12 14638713 14639033 + 2 NA intron (NM_004963, intron 19 of 26) L1MA4A|LINE|L1 57726 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 153-13 chr1 247150913 247151025 + 2 NA intron (NM_001297567, intron 3 of 3) L1ME3A|LINE|L1 21048 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 461-182 chr3 181563908 181564305 + 2 NA intron (NR_075091, intron 4 of 7) intron (NR_075091, intron 4 of 7) -46228 NR_075090 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 627-72 chr3 66913411 66913744 + 2 NA Intergenic L1M4|LINE|L1 -84730 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 345-163 chr14 87430957 87431213 + 2 NA Intergenic Intergenic 224209 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 561-161 chr5 53782690 53783113 + 2 NA intron (NR_147167, intron 4 of 5) intron (NR_147167, intron 4 of 5) 36781 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 268-18 chr1 174152021 174152202 + 2 NA intron (NR_121197, intron 3 of 3) intron (NR_121197, intron 3 of 3) 7176 NR_121197 102724601 Hs.563791 NR_121197 ENSG00000227373 RABGAP1L-DT - RABGAP1L divergent transcript ncRNA 214-75 chr12 21690041 21690211 + 2 NA Intergenic L1PA15|LINE|L1 -32271 NM_002300 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 522-103 chr17 27281775 27282102 + 2 NA Intergenic Intergenic 12058 NR_039748 100616277 NR_039748 ENSG00000263583 MIR4522 - microRNA 4522 ncRNA 256-58 chr10 126535005 126535158 + 2 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) -13588 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 476-280 chr9 28550404 28550822 + 2 NA intron (NM_152570, intron 2 of 6) L1MEd|LINE|L1 168692 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 351-343 chr4 53861465 53861785 + 2 NA Intergenic Intergenic 125657 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 259-155 chr16 87352481 87352738 + 2 NA intron (NM_024735, intron 2 of 8) MER5A|DNA|hAT-Charlie 31167 NM_024735 79791 Hs.567582 NM_024735 ENSG00000103264 FBXO31 FBX14|FBXO14|Fbx31|MRT45|pp2386 F-box protein 31 protein-coding 280-219 chr2 157504107 157504379 + 2 NA Intergenic Intergenic -60154 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 405-27 chr10 35571123 35571460 + 2 NA 3' UTR (NM_001282852, exon 9 of 9) 3' UTR (NM_001282852, exon 9 of 9) -34050 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 570-202 chr8 136424539 136424930 + 2 NA Intergenic L1M2c|LINE|L1 -106064 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 275-105 chr14 39171100 39171308 + 2 NA promoter-TSS (NM_177452) promoter-TSS (NM_177452) -871 NM_177452 122553 Hs.13303 NM_177452 ENSG00000182400 TRAPPC6B NEDMEBA|TPC6 trafficking protein particle complex 6B protein-coding 412-146 chr2 12925200 12925511 + 2 NA Intergenic Intergenic 81658 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 565-152 chr5 145375577 145376008 + 2 NA Intergenic L1PA8A|LINE|L1 459550 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 523-91 chr15 97824618 97825024 + 2 NA intron (NR_024172, intron 1 of 2) L1MC1|LINE|L1 49608 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 271-471 chr9 1880937 1881123 + 2 NA Intergenic L2a|LINE|L2 -134317 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 254-394 chr7 146239673 146239886 + 2 NA Intergenic Intergenic -534492 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 371-197 chr2 182510624 182510835 + 2 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 11797 NM_005019 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 260-392 chr6 162097224 162097424 + 2 NA intron (NM_004562, intron 4 of 11) MIRb|SINE|MIR 626347 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 350-107 chr12 123977162 123977397 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 4064 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 230-49 chr10 108017160 108017358 + 2 NA intron (NR_125760, intron 4 of 4) L1M4c|LINE|L1 52034 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 332-50 chr10 20090922 20091197 + 2 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 274627 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 522-12 chr1 199970214 199970526 + 2 NA Intergenic Intergenic -57340 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 270-213 chr20 56329524 56329754 + 2 NA Intergenic L2c|LINE|L2 -29335 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 350-34 chr1 220986349 220986581 + 2 NA Intergenic MIR|SINE|MIR -106325 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 271-272 chr3 93973136 93973329 + 2 NA intron (NM_001314077, intron 1 of 15) intron (NM_001314077, intron 1 of 15) 849 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 146-25 chr14 64352434 64352538 + 2 NA Intergenic AluSp|SINE|Alu -4875 NR_033777 441687 Hs.685242 NR_033777 TEX21P - testis expressed 21, pseudogene pseudo 275-259 chr4 33213866 33214055 + 2 NA Intergenic MER92-int|LTR|ERV1 825933 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 278-130 chr15 46885213 46885488 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -298739 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 430-322 chr8 132368667 132369027 + 2 NA intron (NM_004519, intron 1 of 14) L1MC3|LINE|L1 78415 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 301-84 chr12 14521809 14522092 + 2 NA intron (NM_024829, intron 6 of 10) L1MA6|LINE|L1 -45782 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 534-228 chr6 156822005 156822386 + 2 NA intron (NM_020732, intron 1 of 19) intron (NM_020732, intron 1 of 19) -42464 NR_039676 100616154 NR_039676 ENSG00000271899 MIR4466 mir-4466 microRNA 4466 ncRNA 376-100 chr13 112046212 112046522 + 2 NA intron (NR_120392, intron 1 of 3) L1M4a1|LINE|L1 -20782 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 329-313 chr2 226099612 226099852 + 2 NA Intergenic Intergenic -43062 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 570-49 chr12 26132509 26132883 + 2 NA Intergenic Intergenic -7659 NM_030762 79365 Hs.177841 NM_030762 ENSG00000123095 BHLHE41 BHLHB3|DEC2|SHARP1|hDEC2 basic helix-loop-helix family member e41 protein-coding 304-67 chr10 124298744 124298995 + 2 NA Intergenic Intergenic 120054 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 226-293 chr5 150630036 150630214 + 2 NA intron (NM_001166208, intron 2 of 2) intron (NM_001166208, intron 2 of 2) -10535 NM_007286 11346 Hs.435228 NM_007286 ENSG00000171992 SYNPO - synaptopodin protein-coding 330-196 chr16 80409705 80409911 + 2 NA intron (NR_120307, intron 2 of 5) L1MEc|LINE|L1 -130926 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 313-152 chr14 69053231 69053534 + 2 NA 3' UTR (NM_001284206, exon 9 of 9) 3' UTR (NM_001284206, exon 9 of 9) 73700 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 243-160 chr17 3499396 3499548 + 2 NA TTS (NM_001128085) TTS (NM_001128085) 14380 NM_001321336 84690 Hs.351068 NM_032598 ENSG00000141255 SPATA22 NYD-SP20|NYDSP20 spermatogenesis associated 22 protein-coding 301-307 chr4 38595658 38595902 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 31777 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 277-316 chr5 41212867 41213046 + 2 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 576 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 219-122 chr16 6820928 6821111 + 2 NA intron (NM_001142334, intron 1 of 13) MIRb|SINE|MIR 47210 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 163-85 chr3 99204506 99204587 + 2 NA Intergenic Intergenic -302851 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 362-389 chr6 148377577 148377800 + 2 NA intron (NM_001346506, intron 1 of 20) MIR3|SINE|MIR 34850 NM_001346506 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 551-73 chr18 45884569 45884906 + 2 NA exon (NM_020964, exon 30 of 44) exon (NM_020964, exon 30 of 44) 59062 NM_213602 284266 Hs.287692 NM_213602 ENSG00000197046 SIGLEC15 CD33L3|HsT1361|SIGLEC-15 sialic acid binding Ig like lectin 15 protein-coding 373-446 chrX 138700372 138700644 + 2 NA intron (NM_033642, intron 3 of 4) intron (NM_033642, intron 3 of 4) 11209 NM_004114 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 528-163 chr3 117318236 117318578 + 2 NA Intergenic Intergenic 372518 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 370-311 chr3 85872152 85872497 + 2 NA intron (NM_001256502, intron 3 of 10) intron (NM_001256502, intron 3 of 10) -44274 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 325-39 chr1 217268231 217268548 + 2 NA Intergenic Intergenic -130687 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 312-97 chr12 20113946 20114161 + 2 NA Intergenic Intergenic 13848 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 207-143 chr2 105998342 105998516 + 2 NA Intergenic LTR9D|LTR|ERV1 -67259 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 331-131 chr12 129637407 129637632 + 2 NA intron (NM_133448, intron 2 of 8) MSTA|LTR|ERVL-MaLR 266506 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 332-81 chr11 13638111 13638363 + 2 NA Intergenic L1MB8|LINE|L1 -30431 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 224-263 chr5 146331570 146331739 + 2 NA Intergenic Intergenic -7185 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 326-332 chr3 63702399 63702696 + 2 NA Intergenic L1MDa|LINE|L1 49872 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 387-58 chr11 40594983 40595351 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -302037 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 185-192 chr7 84987193 84987335 + 2 NA Intergenic L1ME3C|LINE|L1 134667 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 275-362 chr8 102907622 102907816 + 2 NA intron (NR_126339, intron 2 of 2) intron (NR_126339, intron 2 of 2) 43448 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 593-102 chr3 150487414 150487913 + 2 NA Intergenic L1MB1|LINE|L1 58833 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 308-366 chr5 2054688 2054848 + 2 NA Intergenic L1ME2|LINE|L1 167437 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 315-144 chr15 27571836 27572119 + 2 NA Intergenic L1ME2|LINE|L1 -410658 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 623-5 chr1 68789122 68789572 + 2 NA Intergenic L1M3b|LINE|L1 -266551 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 273-70 chr11 20557892 20558138 + 2 NA Intergenic Intergenic -41385 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 201-42 chr11 29277629 29277786 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -316706 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 712-18 chr11 64503083 64503668 + 2 NA Intergenic MLT2B3|LTR|ERVL -52566 NM_001307985 55867 Hs.220844 NM_018484 ENSG00000168065 SLC22A11 OAT4|hOAT4 solute carrier family 22 member 11 protein-coding 362-116 chr12 55147111 55147415 + 2 NA Intergenic L1MEc|LINE|L1 17494 NM_001005243 441639 Hs.553827 NM_001005243 ENSG00000170605 OR9K2 OR12-2 olfactory receptor family 9 subfamily K member 2 protein-coding 161-104 chr7 47642770 47642915 + 2 NA Intergenic L1M4|LINE|L1 -12402 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 153-26 chr12 94018988 94019074 + 2 NA Intergenic Intergenic -75425 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 299-129 chr14 46211033 46211307 + 2 NA intron (NR_102702, intron 2 of 3) intron (NR_102702, intron 2 of 3) 147011 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 243-5 chr1 40987068 40987257 + 2 NA intron (NR_125440, intron 3 of 17) OldhAT1|DNA|hAT-Ac -1357 NM_001301237 1503 Hs.473087 NM_001905 ENSG00000171793 CTPS1 CTPS|GATD5|IMD24 CTP synthase 1 protein-coding 245-111 chr13 22721891 22722073 + 2 NA Intergenic Intergenic 176199 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 420-269 chr7 70533011 70533241 + 2 NA intron (NM_015570, intron 5 of 18) AluJo|SINE|Alu -599018 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 323-592 chrX 38101167 38101485 + 2 NA intron (NM_001163334, intron 8 of 16) intron (NM_001163334, intron 8 of 16) 67792 NM_001163334 94122 Hs.662334 NM_138780 ENSG00000147041 SYTL5 slp5 synaptotagmin like 5 protein-coding 378-297 chr4 23544670 23545023 + 2 NA Intergenic L1PA10|LINE|L1 336446 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 167-51 chr2 4596529 4596641 + 2 NA Intergenic Intergenic 59637 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 313-180 chr16 14155142 14155446 + 2 NA intron (NM_001308142, intron 3 of 16) L1MEc|LINE|L1 -31392 NM_001365413 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 354-480 chr8 130864646 130864863 + 2 NA intron (NM_001115, intron 9 of 17) L1MC3|LINE|L1 176155 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 343-144 chr14 63076602 63076840 + 2 NA Intergenic Intergenic -31263 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 504-166 chr3 36364237 36364667 + 2 NA Intergenic MER4B-int|LTR|ERV1 -16035 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 280-128 chr14 84138162 84138428 + 2 NA Intergenic HAL1ME|LINE|L1 -1133637 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 336-31 chr1 113928096 113928376 + 2 NA intron (NR_110725, intron 2 of 4) intron (NR_110725, intron 2 of 4) 1022 NR_110725 101928846 Hs.232534 NR_110725 ENSG00000235527 HIPK1-AS1 - HIPK1 antisense RNA 1 ncRNA 436-194 chr3 125240118 125240408 + 2 NA intron (NM_001348434, intron 6 of 7) AluSz6|SINE|Alu -27498 NM_024628 84561 Hs.658514 NM_024628 ENSG00000221955 SLC12A8 CCC9 solute carrier family 12 member 8 protein-coding 351-339 chr4 35431434 35431688 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 812378 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 374-126 chr16 50880851 50881103 + 2 NA intron (NR_039672, intron 2 of 6) MIRb|SINE|MIR 2204 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 336-456 chr5 85918288 85918510 + 2 NA Intergenic Intergenic -364045 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 195-252 chr9 31286515 31286680 + 2 NA Intergenic L1MEg|LINE|L1 94893 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 417-275 chr8 6117362 6117679 + 2 NA Intergenic L1PA8|LINE|L1 289028 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 202-38 chr11 7029705 7029867 + 2 NA intron (NM_176822, intron 1 of 11) intron (NM_176822, intron 1 of 11) 9317 NM_176822 338323 Hs.449637 NM_176822 ENSG00000158077 NLRP14 CLR11.2|GC-LRR|NALP14|NOD5|PAN8 NLR family pyrin domain containing 14 protein-coding 266-315 chr5 23950949 23951119 + 2 NA promoter-TSS (NR_131245) promoter-TSS (NR_131245) -314 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 244-386 chr9 82716891 82717126 + 2 NA Intergenic L1ME1|LINE|L1 346134 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 206-42 chr10 104666504 104666635 + 2 NA promoter-TSS (NR_104028) promoter-TSS (NR_104028) -353 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 356-147 chr14 57854147 57854338 + 2 NA intron (NM_001352012, intron 1 of 8) L1ME4a|LINE|L1 10757 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 247-13 chr1 102010391 102010620 + 2 NA Intergenic MER39|LTR|ERV1 -13271 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 218-351 chr9 83205978 83206144 + 2 NA Intergenic Intergenic 61207 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 175-164 chr8 78936223 78936335 + 2 NA Intergenic L1M3|LINE|L1 98750 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 164-25 chr12 14411945 14412065 + 2 NA intron (NM_181352, intron 1 of 14) L1MB8|LINE|L1 26724 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 424-115 chr19 24144358 24144777 + 2 NA Intergenic L1M2|LINE|L1 18880 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 406-80 chr14 61337804 61338146 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 16532 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 370-74 chr10 128816056 128816282 + 2 NA Intergenic Intergenic -96664 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 571-145 chr6 33611816 33612323 + 2 NA Intergenic LTR33|LTR|ERVL -9253 NM_002224 3710 Hs.65758 NM_002224 ENSG00000096433 ITPR3 IP3R|IP3R3 inositol 1,4,5-trisphosphate receptor type 3 protein-coding 295-34 chr1 237294401 237294670 + 2 NA intron (NM_001035, intron 2 of 104) Charlie23a|DNA|hAT-Charlie -176584 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 269-236 chr21 30878327 30878519 + 2 NA Intergenic Intergenic 3157 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 545-59 chr12 118344804 118345173 + 2 NA intron (NM_001346490, intron 1 of 21) intron (NM_001346490, intron 1 of 21) 14717 NM_001346489 51347 Hs.644420 NM_016281 ENSG00000135090 TAOK3 DPK|JIK|MAP3K18|hKFC-A TAO kinase 3 protein-coding 355-440 chr6 122148794 122149019 + 2 NA Intergenic L1MC|LINE|L1 -250645 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 308-201 chr18 63747313 63747577 + 2 NA Intergenic Intergenic -5602 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 342-179 chr16 61078248 61078580 + 2 NA Intergenic Intergenic -22648 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 692-103 chr8 129249427 129249960 + 2 NA Intergenic Intergenic -8453 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 306-236 chr2 63618075 63618311 + 2 NA Intergenic Intergenic 29042 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 395-64 chr12 13480497 13480731 + 2 NA Intergenic Intergenic -103869 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 610-99 chr20 53996943 53997481 + 2 NA intron (NM_001366297, intron 4 of 8) L2c|LINE|L2 61808 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 641-57 chr2 19375630 19376234 + 2 NA Intergenic MLT2B4|LTR|ERVL -17309 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 291-495 chr9 84506925 84507088 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -138279 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 314-504 chr6 67902513 67902739 + 2 NA Intergenic L1PA14|LINE|L1 -152725 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 340-19 chr1 111261228 111261457 + 2 NA Intergenic L1MA3|LINE|L1 -19182 NR_003928 149620 Hs.736960 NM_001013621 ENSG00000203878 CHIAP2 - chitinase, acidic pseudogene 2 pseudo 421-267 chr6 140035564 140035805 + 2 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -44423 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 469-105 chr16 80114402 80114690 + 2 NA Intergenic Intergenic 319297 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 244-324 chr6 88492721 88492920 + 2 NA Intergenic Intergenic 46549 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 243-382 chr6 43323616 43323796 + 2 NA Intergenic L1MB5|LINE|L1 -14880 NM_206922 401262 Hs.653165 NM_206922 ENSG00000146215 CRIP3 CRP-3|TLP|TLP-A|h6LIMo cysteine rich protein 3 protein-coding 165-87 chr4 30540923 30541041 + 2 NA Intergenic Intergenic -179387 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 198-17 chr1 214277426 214277576 + 2 NA Intergenic Intergenic -3658 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 226-323 chr7 34695763 34695981 + 2 NA intron (NM_001300934, intron 2 of 6) L1PB4|LINE|L1 37633 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 235-306 chr6 55139279 55139407 + 2 NA intron (NM_001526, intron 1 of 7) L2|LINE|L2 32883 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 317-173 chr15 95062736 95062954 + 2 NA Intergenic L1PA14|LINE|L1 207482 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 227-361 chr8 21257242 21257455 + 2 NA Intergenic L1ME1|LINE|L1 -40891 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 372-446 chr6 162561031 162561319 + 2 NA intron (NM_004562, intron 1 of 11) L2|LINE|L2 -165957 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 366-367 chr6 8670834 8671021 + 2 NA intron (NR_038980, intron 3 of 4) intron (NR_038980, intron 3 of 4) 18718 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 219-74 chr12 73200711 73200879 + 2 NA intron (NR_110130, intron 2 of 3) intron (NR_110130, intron 2 of 3) 41605 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 224-195 chr3 43837948 43838097 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -146428 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 415-8 chr1 74567161 74567411 + 2 NA TTS (NM_001002912) TTS (NM_001002912) -10144 NR_121671 101927320 Hs.662589 NR_121670 ENSG00000234497 ERICH3-AS1 - ERICH3 antisense RNA 1 ncRNA 387-78 chr12 37903761 37904030 + 2 NA Intergenic ALR/Alpha|Satellite|centr -412879 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 678-90 chr5 92376547 92377065 + 2 NA Intergenic Intergenic -993489 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 365-431 chr9 116970614 116970919 + 2 NA intron (NM_014010, intron 9 of 21) intron (NM_014010, intron 9 of 21) 210435 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 287-11 chr1 73632667 73632925 + 2 NA Intergenic L1M1|LINE|L1 -41883 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 238-206 chr20 44276443 44276612 + 2 NA intron (NM_001256737, intron 5 of 5) MER113|DNA|hAT-Charlie 29219 NM_024034 78997 Hs.517059 NM_024034 ENSG00000124194 GDAP1L1 dJ881L22.1|dJ995J12.1.1 ganglioside induced differentiation associated protein 1 like 1 protein-coding 218-222 chr3 107203800 107203938 + 2 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 36769 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 221-177 chr3 19966419 19966607 + 2 NA intron (NM_001292048, intron 2 of 5) L1MB3|LINE|L1 19416 NM_004162 5868 Hs.475663 NM_004162 ENSG00000144566 RAB5A RAB5 RAB5A, member RAS oncogene family protein-coding 368-75 chr11 35651064 35651394 + 2 NA Intergenic Intergenic -11546 NM_017583 54765 Hs.192103 NM_017583 ENSG00000166326 TRIM44 AN3|DIPB|HSA249128|MC7 tripartite motif containing 44 protein-coding 469-244 chr6 60641597 60641899 + 2 NA Intergenic Intergenic -932382 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 352-240 chr2 77639585 77639798 + 2 NA Intergenic L1MA4|LINE|L1 -117258 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 290-174 chr17 58858352 58858588 + 2 NA intron (NM_014906, intron 1 of 6) L1MA5A|LINE|L1 102601 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 224-287 chr6 145067038 145067183 + 2 NA Intergenic Intergenic 619767 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 326-147 chr14 41079056 41079302 + 2 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 124468 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 383-81 chr12 70019778 70020059 + 2 NA Intergenic L1M1|LINE|L1 194691 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 228-322 chr7 80296602 80296753 + 2 NA Intergenic L1M3c|LINE|L1 77762 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 222-158 chr19 36892073 36892231 + 2 NA exon (NM_001171979, exon 6 of 6) exon (NM_001171979, exon 6 of 6) 23887 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 436-241 chr5 50982295 50982570 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -12245 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 242-117 chr15 71193528 71193661 + 2 NA intron (NM_024817, intron 2 of 16) THE1B|LTR|ERVL-MaLR -4535 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 256-393 chr7 86333511 86333730 + 2 NA Intergenic Intergenic -310289 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 336-510 chr7 33701590 33701847 + 2 NA Intergenic Intergenic -203197 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 339-616 chr9 135649589 135649805 + 2 NA Intergenic MER34C_|LTR|ERV1 -10157 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 231-118 chr16 60138538 60138686 + 2 NA Intergenic L1PA17|LINE|L1 221181 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 286-107 chr13 105317914 105318088 + 2 NA Intergenic Intergenic -147866 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 269-276 chr4 64909005 64909175 + 2 NA Intergenic L1MC3|LINE|L1 95410 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 465-268 chr7 14088813 14089149 + 2 NA Intergenic HAL1ME|LINE|L1 -97556 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 157-51 chr18 13460790 13460871 + 2 NA TTS (NR_049822) TTS (NR_049822) 883 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 423-90 chr15 101570017 101570278 + 2 NA Intergenic HAL1|LINE|L1 44192 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 394-93 chr13 41150557 41150933 + 2 NA intron (NR_120423, intron 2 of 3) LTR49-int|LTR|ERV1 17817 NR_120423 101929140 Hs.663088 NR_120423 ENSG00000278390 LOC101929140 - uncharacterized LOC101929140 ncRNA 220-347 chr7 71517779 71517970 + 2 NA intron (NM_022479, intron 5 of 10) intron (NM_022479, intron 5 of 10) -210104 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 265-116 chr15 23475604 23475786 + 2 NA Intergenic LOR1-int|LTR|ERV1 -28452 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 295-77 chr11 78693012 78693238 + 2 NA intron (NM_001098816, intron 28 of 33) intron (NM_001098816, intron 28 of 33) -118261 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 286-82 chr12 6176825 6177074 + 2 NA Intergenic AluJb|SINE|Alu -22997 NM_001330312 928 Hs.114286 NM_001769 ENSG00000010278 CD9 BTCC-1|DRAP-27|MIC3|MRP-1|TSPAN-29|TSPAN29 CD9 molecule protein-coding 399-212 chr3 102413483 102413736 + 2 NA Intergenic Intergenic -21406 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 190-164 chr7 82909924 82910070 + 2 NA intron (NM_033026, intron 7 of 24) intron (NM_033026, intron 7 of 24) 252887 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 511-151 chr20 55473749 55474088 + 2 NA Intergenic MIRc|SINE|MIR -46721 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 411-236 chr5 123943090 123943490 + 2 NA Intergenic Intergenic 397873 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 190-129 chr3 173063160 173063297 + 2 NA intron (NM_031955, intron 2 of 10) intron (NM_031955, intron 2 of 10) 78007 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 316-12 chr1 73390230 73390438 + 2 NA Intergenic L1MC|LINE|L1 84164 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 286-483 chr9 110909198 110909369 + 2 NA intron (NM_001351417, intron 5 of 5) LOR1b|LTR|ERV1 127497 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 318-399 chr4 58463897 58464072 + 2 NA Intergenic HERV9NC-int|LTR|ERV1 72344 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 450-172 chr20 61567613 61567947 + 2 NA intron (NM_001252338, intron 1 of 14) AluJr|SINE|Alu -31981 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 290-301 chr3 193931254 193931530 + 2 NA Intergenic AluJr4|SINE|Alu 62846 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 285-388 chr7 52950147 52950313 + 2 NA Intergenic L1MC2|LINE|L1 -85403 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 497-262 chr7 53575533 53575948 + 2 NA Intergenic L1PB1|LINE|L1 236191 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 494-173 chr3 62456860 62457313 + 2 NA intron (NM_003716, intron 26 of 29) intron (NM_003716, intron 26 of 29) -83536 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 395-265 chr5 27455569 27455830 + 2 NA Intergenic Intergenic -16593 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 161-114 chr8 66822353 66822498 + 2 NA exon (NM_170709, exon 6 of 16) exon (NM_170709, exon 6 of 16) 47220 NM_170709 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 398-141 chr18 4746459 4746835 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -291340 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 193-64 chr15 34488165 34488303 + 2 NA Intergenic Intergenic 40137 NR_036050 100302160 NR_036050 ENSG00000221649 MIR1233-1 MIR1233|MIRN1233|hsa-mir-1233|hsa-mir-1233-1 microRNA 1233-1 ncRNA 377-251 chr20 54533771 54534061 + 2 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 58323 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 679-37 chr16 63269134 63269676 + 2 NA Intergenic L1M5|LINE|L1 -1232967 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 425-131 chr2 19329501 19329855 + 2 NA Intergenic Intergenic -18751 NR_039914 100616307 NR_039914 ENSG00000266738 MIR4757 - microRNA 4757 ncRNA 276-216 chr2 18775094 18775359 + 2 NA Intergenic MER4B|LTR|ERV1 -185646 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 134-42 chr18 72476510 72476627 + 2 NA Intergenic Intergenic 67774 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 270-262 chr4 45375006 45375155 + 2 NA Intergenic Intergenic -648446 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 363-9 chr1 84768988 84769231 + 2 NA Intergenic Intergenic -78641 NM_001166295 117178 Hs.22587 NM_014021 ENSG00000117155 SSX2IP ADIP|hMsd1 SSX family member 2 interacting protein protein-coding 312-14 chr1 100586061 100586292 + 2 NA Intergenic Intergenic 48037 NM_022049 54112 Hs.170053 NM_022049 ENSG00000181656 GPR88 COCPMR|STRG G protein-coupled receptor 88 protein-coding 328-339 chr3 27837472 27837697 + 2 NA intron (NR_146630, intron 3 of 4) L2a|LINE|L2 -3448 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 293-453 chr8 124084803 124084989 + 2 NA intron (NM_001039112, intron 33 of 40) L1MA3|LINE|L1 -44114 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 606-10 chr1 186777109 186777591 + 2 NA Intergenic Intergenic -51550 NM_024420 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 206-280 chr9 14334891 14335088 + 2 NA intron (NM_001369458, intron 1 of 11) L1ME1|LINE|L1 -12602 NM_001369472 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 452-152 chr20 17194222 17194552 + 2 NA Intergenic Intergenic -31720 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 240-414 chr8 87571786 87572007 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 302119 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 200-134 chr2 79546187 79546318 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 23069 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 553-183 chr4 139360418 139360820 + 2 NA exon (NM_057175, exon 13 of 20) exon (NM_057175, exon 13 of 20) -58068 NM_001184988 4717 Hs.84549 NM_002494 ENSG00000109390 NDUFC1 KFYI NADH:ubiquinone oxidoreductase subunit C1 protein-coding 534-146 chr21 21963111 21963572 + 2 NA Intergenic Intergenic 135118 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 206-212 chr5 99356716 99356903 + 2 NA Intergenic L2b|LINE|L2 -177181 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 303-69 chr11 74637484 74637682 + 2 NA intron (NM_001363597, intron 11 of 11) intron (NM_001363597, intron 11 of 11) 45001 NR_046410 10714 Hs.82502 NM_006591 ENSG00000077514 POLD3 P66|P68|PPP1R128 DNA polymerase delta 3, accessory subunit protein-coding 378-159 chr16 52729235 52729566 + 2 NA Intergenic Intergenic -122425 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 203-187 chr5 123913184 123913299 + 2 NA Intergenic L1M4a1|LINE|L1 367824 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 445-156 chr20 54748098 54748430 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 272671 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 247-120 chr14 80241843 80242023 + 2 NA intron (NR_038355, intron 2 of 8) MER21C|LTR|ERVL -10876 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 294-304 chr3 101306793 101307072 + 2 NA intron (NM_016247, intron 2 of 18) L1ME2z|LINE|L1 13643 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 450-65 chr12 59334492 59334796 + 2 NA Intergenic L1MCa|LINE|L1 -261385 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 361-472 chr9 14915364 14915657 + 2 NA Intergenic AluSx1|SINE|Alu -4515 NR_163238 158326 Hs.50850 NM_144966 ENSG00000164946 FREM1 BNAR|C9orf143|C9orf145|C9orf154|MOTA|TILRR|TRIGNO2 FRAS1 related extracellular matrix 1 protein-coding 253-183 chr2 52362041 52362252 + 2 NA intron (NR_135237, intron 10 of 10) L1MCc|LINE|L1 -8502 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 269-320 chr5 97598296 97598537 + 2 NA intron (NR_105028, intron 2 of 3) L1MA7|LINE|L1 93720 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 399-159 chr2 121013881 121014170 + 2 NA Intergenic L1MB5|LINE|L1 221744 NM_005270 2736 Hs.111867 NM_005270 ENSG00000074047 GLI2 CJS|HPE9|PHS2|THP1|THP2 GLI family zinc finger 2 protein-coding 254-273 chr4 58468483 58468692 + 2 NA Intergenic Intergenic 67741 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 518-192 chr4 29730804 29731168 + 2 NA Intergenic Intergenic 516694 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 329-202 chr16 47054126 47054363 + 2 NA Intergenic AluJb|SINE|Alu -80570 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 281-66 chr11 41992451 41992663 + 2 NA Intergenic Intergenic 92901 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 423-85 chr15 68535759 68536010 + 2 NA intron (NM_001324014, intron 2 of 12) intron (NM_001324014, intron 2 of 12) 17511 NM_001324014 10391 Hs.551213 NM_006091 ENSG00000103647 CORO2B CLIPINC coronin 2B protein-coding 255-460 chr9 78842248 78842495 + 2 NA Intergenic Intergenic 303295 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 285-466 chrX 75093203 75093402 + 2 NA intron (NM_001271699, intron 3 of 14) L1MC2|LINE|L1 62981 NM_001271697 22 Hs.370480 NM_004299 ENSG00000131269 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP binding cassette subfamily B member 7 protein-coding 616-124 chr4 100148788 100149183 + 2 NA Intergenic Intergenic -41048 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 246-147 chr17 21099271 21099430 + 2 NA Intergenic Intergenic 23794 NR_110896 101060544 Hs.585812 NR_110895 ENSG00000236819 LINC01563 HP08942 long intergenic non-protein coding RNA 1563 ncRNA 262-385 chr6 133463944 133464118 + 2 NA intron (NM_172103, intron 8 of 18) intron (NM_172103, intron 8 of 18) 222532 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 300-95 chr12 114197662 114197835 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR 44022 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 370-426 chr7 105698506 105698744 + 2 NA intron (NM_020725, intron 3 of 11) AluJb|SINE|Alu -19463 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 260-19 chr1 113881286 113881484 + 2 NA intron (NM_001010922, intron 3 of 3) intron (NM_001010922, intron 3 of 3) 6196 NM_001010922 440603 Hs.123106 NM_001010922 ENSG00000188761 BCL2L15 Bfk|C1orf178 BCL2 like 15 protein-coding 282-43 chr10 49553604 49553837 + 2 NA Intergenic LTR8B|LTR|ERV1 -14182 NM_001277059 2074 Hs.49063 NM_000124 ENSG00000225830 ERCC6 ARMD5|CKN2|COFS|COFS1|CSB|CSB-PGBD3|POF11|RAD26|UVSS1 ERCC excision repair 6, chromatin remodeling factor protein-coding 457-133 chr2 231886597 231886872 + 2 NA Intergenic MER34A1|LTR|ERV1 5564 NR_031717 100302126 NR_031717 ENSG00000222246 MIR1471 MIRN1471|hsa-mir-1471 microRNA 1471 ncRNA 369-330 chr5 96809067 96809391 + 2 NA intron (NM_001198541, intron 1 of 18) MER41A|LTR|ERV1 -1040 NM_001349244 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 368-197 chr17 77510148 77510486 + 2 NA Intergenic MIRb|SINE|MIR -16684 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 230-204 chr20 19389542 19389714 + 2 NA intron (NM_020689, intron 2 of 16) L1MA9|LINE|L1 -105032 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 270-186 chr2 81991680 81991884 + 2 NA Intergenic L1MEf|LINE|L1 -524836 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 358-149 chr16 64850598 64850818 + 2 NA Intergenic L1MA5|LINE|L1 271355 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 512-254 chr7 32382558 32382923 + 2 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 45484 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 405-35 chr10 80815934 80816219 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 166279 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 582-171 chrX 39162398 39162882 + 2 NA Intergenic CpG 164722 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 304-509 chr8 74586595 74586828 + 2 NA Intergenic Intergenic -13155 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 293-143 chr16 66068904 66069149 + 2 NA Intergenic Intergenic -297665 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 293-323 chr4 177390317 177390575 + 2 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat 51991 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 378-355 chr5 160806967 160807337 + 2 NA intron (NM_001366652, intron 1 of 24) intron (NM_001366652, intron 1 of 24) 45059 NM_025153 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 327-306 chr21 24080081 24080259 + 2 NA Intergenic Intergenic 241207 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 228-287 chr6 38983747 38983912 + 2 NA intron (NM_001371, intron 85 of 91) intron (NM_001371, intron 85 of 91) -30722 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 259-352 chr6 124683314 124683554 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -279111 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 422-153 chr2 125635545 125635820 + 2 NA Intergenic L2a|LINE|L2 482303 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 222-91 chr12 97474417 97474562 + 2 NA intron (NR_024037, intron 2 of 8) intron (NR_024037, intron 2 of 8) 9469 NR_024037 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 673-74 chr3 28492343 28492851 + 2 NA intron (NM_001040432, intron 6 of 9) intron (NM_001040432, intron 6 of 9) -82681 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 550-75 chr14 75508006 75508453 + 2 NA Intergenic L1MB7|LINE|L1 -14240 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 311-524 chr8 125448087 125448289 + 2 NA Intergenic Intergenic 15979 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 267-124 chr15 61308645 61308801 + 2 NA Intergenic Intergenic -79421 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 368-322 chr4 36454914 36455238 + 2 NA Intergenic Intergenic -28648 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 293-450 chr8 121468433 121468721 + 2 NA Intergenic Intergenic -170769 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 211-244 chr5 118686404 118686567 + 2 NA Intergenic Intergenic 90297 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 541-157 chr3 83602439 83602865 + 2 NA Intergenic Intergenic 1266923 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 295-233 chr2 167037618 167037876 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 103208 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 413-241 chr5 93738919 93739279 + 2 NA 3' UTR (NM_153216, exon 1 of 1) 3' UTR (NM_153216, exon 1 of 1) 2501 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 153-32 chr14 62268757 62268851 + 2 NA Intergenic Intergenic -128831 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 345-406 chr5 7436394 7436604 + 2 NA intron (NM_020546, intron 2 of 24) intron (NM_020546, intron 2 of 24) 40361 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 457-186 chr4 129060726 129061035 + 2 NA intron (NM_001300898, intron 2 of 5) L1M2a|LINE|L1 32659 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 349-214 chr18 10218675 10219017 + 2 NA Intergenic L1ME1|LINE|L1 195524 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 595-121 chr4 46945253 46945704 + 2 NA intron (NM_001204267, intron 7 of 7) intron (NM_001204267, intron 7 of 7) -36233 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 265-226 chr22 33899860 33900046 + 2 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 20475 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 299-339 chr4 149359953 149360163 + 2 NA intron (NM_001363507, intron 13 of 13) intron (NM_001363507, intron 13 of 13) 205763 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 380-236 chr22 34832244 34832487 + 2 NA intron (NR_138042, intron 3 of 4) MIRb|SINE|MIR 165551 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 290-10 chr1 78369790 78369984 + 2 NA TTS (NR_027310) TTS (NR_027310) -121087 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 221-273 chr7 15277694 15277878 + 2 NA intron (NM_001004320, intron 12 of 12) L1PA5|LINE|L1 284229 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 345-538 chr8 130614672 130614884 + 2 NA Intergenic Intergenic -171104 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 316-136 chr12 59555526 59555830 + 2 NA Intergenic L1ME4b|LINE|L1 -40351 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 144-3 chr1 69403334 69403439 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -29869 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 283-353 chr5 29397061 29397300 + 2 NA Intergenic Intergenic -1204 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 369-456 chrX 88217640 88217968 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -529421 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 244-118 chr16 35578302 35578505 + 2 NA Intergenic Intergenic -71233 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 337-202 chr17 52014555 52014842 + 2 NA intron (NM_001082533, intron 3 of 9) L1MEc|LINE|L1 144016 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 358-334 chr4 64456582 64456938 + 2 NA Intergenic Intergenic -47300 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 350-10 chr1 91325456 91325780 + 2 NA intron (NM_001017975, intron 20 of 38) L1M1|LINE|L1 79219 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 264-86 chr12 3057703 3057921 + 2 NA Intergenic Intergenic -19543 NM_001168320 10867 Hs.504517 NM_006675 ENSG00000011105 TSPAN9 NET-5|NET5|PP1057 tetraspanin 9 protein-coding 305-50 chr1 239379730 239380005 + 2 NA Intergenic Intergenic -6701 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 235-191 chr2 198430882 198431046 + 2 NA Intergenic AluSx3|SINE|Alu -55867 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 424-131 chr2 79587382 79587655 + 2 NA intron (NM_001282598, intron 1 of 17) (CTTT)n|Simple_repeat|Simple_repeat 61841 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 414-128 chr18 1093607 1093867 + 2 NA Intergenic Intergenic -165744 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 732-94 chr8 117535052 117535753 + 2 NA intron (NM_080651, intron 3 of 3) AluSx3|SINE|Alu 14689 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 421-208 chr4 38409455 38409718 + 2 NA Intergenic U8|snRNA|snRNA 42672 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 550-37 chr10 93093009 93093378 + 2 NA Intergenic AluSz|SINE|Alu 19300 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 126-61 chr8 24417282 24417369 + 2 NA intron (NR_125808, intron 1 of 5) L1M5|LINE|L1 -23701 NM_003817 8756 Hs.116147 NM_003817 ENSG00000069206 ADAM7 ADAM 7|ADAM-7|EAPI|GP-83|GP83 ADAM metallopeptidase domain 7 protein-coding 642-24 chr12 3554554 3555046 + 2 NA intron (NM_019854, intron 4 of 9) intron (NM_019854, intron 4 of 9) -61981 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 287-442 chr9 91929926 91930176 + 2 NA intron (NM_001318204, intron 1 of 7) MER5B|DNA|hAT-Charlie 20177 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 602-52 chr2 520063 520564 + 2 NA Intergenic AluSg|SINE|Alu -25492 NR_146470 101927362 Hs.385749 NR_146470 ENSG00000225942 LINC01875 - long intergenic non-protein coding RNA 1875 ncRNA 228-284 chr5 175739631 175739823 + 2 NA Intergenic Tigger16a|DNA|TcMar-Tigger -56806 NM_006650 10814 Hs.193235 NM_006650 ENSG00000145920 CPLX2 921-L|CPX-2|CPX2|Hfb1 complexin 2 protein-coding 286-158 chr17 52570226 52570426 + 2 NA Intergenic Intergenic 179804 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 205-226 chr5 101383912 101384077 + 2 NA Intergenic L1ME4b|LINE|L1 -480712 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 642-116 chrX 58447026 58447537 + 2 NA Intergenic ALR/Alpha|Satellite|centr -536648 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 527-28 chr10 55187441 55187777 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -386318 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 165-76 chr3 24293436 24293541 + 2 NA intron (NM_001354708, intron 2 of 9) L1ME3Cz|LINE|L1 142164 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 353-417 chr5 103694526 103694857 + 2 NA Intergenic Intergenic -131902 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 551-178 chr6 129517065 129517480 + 2 NA TTS (NM_001079823) TTS (NM_001079823) 192905 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 445-132 chr2 116096292 116096605 + 2 NA Intergenic Intergenic 752633 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 345-386 chr4 63231029 63231228 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -1069363 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 268-171 chr19 37827465 37827650 + 2 NA TTS (NR_040013) TTS (NR_040013) 10146 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 528-156 chr3 69556538 69556975 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -170668 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 363-90 chr11 107220584 107220908 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -202270 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 343-440 chr5 102477689 102477926 + 2 NA exon (NM_001289002, exon 3 of 14) exon (NM_001289002, exon 3 of 14) 21194 NM_173488 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 205-192 chr3 145816829 145816988 + 2 NA Intergenic L1MC3|LINE|L1 252277 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 204-108 chr16 5419155 5419299 + 2 NA Intergenic MLT2A2|LTR|ERVL 197023 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 433-41 chr11 34466138 34466361 + 2 NA intron (NM_001752, intron 10 of 12) L1MEg|LINE|L1 27315 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 338-419 chr5 29829302 29829560 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -51129 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 535-182 chr4 60448159 60448553 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -474263 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 386-172 chr2 66657638 66657953 + 2 NA intron (NR_110156, intron 1 of 5) L1PA13|LINE|L1 45432 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 481-85 chr14 43543862 43544184 + 2 NA Intergenic Intergenic 963260 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 189-37 chr12 3562033 3562191 + 2 NA intron (NM_019854, intron 4 of 9) intron (NM_019854, intron 4 of 9) -69293 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 366-387 chr6 146621929 146622152 + 2 NA intron (NM_024694, intron 1 of 35) L1ME1|LINE|L1 23068 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 329-180 chr15 35903270 35903555 + 2 NA Intergenic L1MCb|LINE|L1 -23444 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 558-220 chr8 126041235 126041765 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -90303 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 187-162 chr7 79878461 79878582 + 2 NA Intergenic Intergenic -256310 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 224-280 chr6 77287143 77287331 + 2 NA Intergenic L1M3|LINE|L1 176785 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 378-418 chr7 125616039 125616262 + 2 NA Intergenic L1M2|LINE|L1 -351859 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 339-473 chr5 156575607 156575902 + 2 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 248590 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 485-259 chr7 20942807 20943146 + 2 NA intron (NR_126381, intron 2 of 5) L1MB3|LINE|L1 107545 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 328-181 chr15 74742323 74742490 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -6439 NM_000761 1544 Hs.1361 NM_000761 ENSG00000140505 CYP1A2 CP12|CYPIA2|P3-450|P450(PA) cytochrome P450 family 1 subfamily A member 2 protein-coding 602-117 chr6 76064389 76064937 + 2 NA intron (NM_001563, intron 1 of 16) L1PB4|LINE|L1 7999 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 271-121 chr14 23853275 23853496 + 2 NA Intergenic MER65-int|LTR|ERV1 -100385 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 297-161 chr16 54338981 54339188 + 2 NA Intergenic L1MB5|LINE|L1 31374 NR_134922 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 364-464 chr9 8992081 8992277 + 2 NA intron (NM_002839, intron 11 of 45) intron (NM_002839, intron 11 of 45) 134161 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 299-400 chr6 104373794 104374069 + 2 NA Intergenic Intergenic 485615 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 333-80 chr11 39515982 39516238 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 777020 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 347-471 chr7 62452081 62452254 + 2 NA Intergenic Intergenic 851889 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 250-132 chr15 34667836 34668035 + 2 NA Intergenic Intergenic -12171 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 307-370 chr5 9575253 9575437 + 2 NA Intergenic L2a|LINE|L2 26518 NR_003689 100113384 NR_003689 SNORD123 - small nucleolar RNA, C/D box 123 snoRNA 447-269 chr8 86835202 86835470 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -31079 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 348-402 chr5 43783091 43783304 + 2 NA Intergenic MIRb|SINE|MIR -179967 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 413-326 chr9 102734395 102734671 + 2 NA Intergenic Intergenic 214896 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 341-495 chr7 53748148 53748468 + 2 NA intron (NR_038371, intron 4 of 5) L1PA15|LINE|L1 63623 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 490-185 chr3 111356658 111356986 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -185375 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 259-37 chr10 20487102 20487328 + 2 NA Intergenic Intergenic -64755 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 354-263 chr20 48057831 48058116 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -67856 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 317-420 chr6 92609727 92609974 + 2 NA Intergenic Intergenic 809709 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 733-56 chr3 131124661 131125235 + 2 NA intron (NM_001353036, intron 5 of 14) MIRb|SINE|MIR 97220 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 243-359 chr5 63861114 63861281 + 2 NA Intergenic L1M4|LINE|L1 101095 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 267-425 chr8 100413145 100413404 + 2 NA Intergenic Intergenic 30511 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 251-105 chr15 37575631 37575831 + 2 NA Intergenic AluSz|SINE|Alu -358876 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 494-168 chr3 30033197 30033567 + 2 NA Intergenic Intergenic -99226 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 217-237 chr3 150941663 150941820 + 2 NA exon (NM_001195794, exon 2 of 4) exon (NM_001195794, exon 2 of 4) 2495 NM_052995 7401 Hs.745448 NM_052995 ENSG00000163646 CLRN1 RP61|USH3|USH3A clarin 1 protein-coding 343-151 chr14 85687371 85687667 + 2 NA Intergenic Intergenic 154170 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 362-24 chr1 111759119 111759434 + 2 NA intron (NM_007204, intron 2 of 10) intron (NM_007204, intron 2 of 10) 3375 NM_007204 11218 Hs.591405 NM_007204 ENSG00000064703 DDX20 DP103|GEMIN3 DEAD-box helicase 20 protein-coding 601-57 chr17 34801437 34801857 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 159813 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 320-68 chr10 97969735 97969954 + 2 NA intron (NM_001206528, intron 2 of 14) L2a|LINE|L2 60777 NM_018058 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 423-247 chr6 136754650 136754916 + 2 NA intron (NM_005923, intron 1 of 29) intron (NM_005923, intron 1 of 29) -29264 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 442-167 chr21 17831688 17831978 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -12477 NM_001100420 54149 Hs.293811 NM_017447 ENSG00000154642 C21orf91 C21orf14|C21orf38|CSSG1|EURL|YG81 chromosome 21 open reading frame 91 protein-coding 380-313 chr5 107905327 107905532 + 2 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -234492 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 215-30 chr10 48190745 48190946 + 2 NA intron (NM_001018071, intron 16 of 28) Charlie20a|DNA|hAT-Charlie -15702 NM_001042512 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 329-532 chr7 33491838 33492008 + 2 NA intron (NM_001348037, intron 18 of 20) AluSz|SINE|Alu 362359 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 214-84 chr12 78405637 78405805 + 2 NA Intergenic Intergenic -45975 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 356-385 chr5 15582807 15583151 + 2 NA intron (NM_001278317, intron 1 of 3) THE1D|LTR|ERVL-MaLR 32023 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 238-284 chr5 13174307 13174510 + 2 NA Intergenic Intergenic -141522 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 696-52 chr18 32608486 32609025 + 2 NA Intergenic Intergenic 97092 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 243-86 chr12 1970247 1970442 + 2 NA intron (NM_152640, intron 3 of 8) intron (NM_152640, intron 3 of 8) -33768 NR_036546 100271702 Hs.737031 NR_036546 ENSG00000235049 LINC00940 - long intergenic non-protein coding RNA 940 ncRNA 319-121 chr12 128310135 128310436 + 2 NA intron (NM_001136103, intron 1 of 8) L1MA4|LINE|L1 16193 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 251-175 chr2 83470865 83471085 + 2 NA Intergenic Intergenic -51839 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 380-178 chr2 59767533 59767877 + 2 NA Intergenic L1MEd|LINE|L1 549997 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 224-228 chr4 92128709 92128883 + 2 NA Intergenic LTR26|LTR|ERV1 148506 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 613-101 chr5 15897866 15898238 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -37130 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 347-400 chr5 59827123 59827308 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -58367 NM_001364602 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 436-208 chr4 59232835 59233205 + 2 NA Intergenic L1PA13|LINE|L1 219447 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 305-198 chr17 55547101 55547309 + 2 NA Intergenic Intergenic -125370 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 198-126 chr2 105999575 105999744 + 2 NA Intergenic Intergenic -66029 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 477-287 chr8 109911422 109911805 + 2 NA Intergenic Intergenic 64158 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 905-7 chr12 40660635 40661258 + 2 NA Intergenic Intergenic -31493 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 154-3 chr1 98190234 98190337 + 2 NA Intergenic Intergenic -20426 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 437-289 chr8 142018573 142018885 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -157610 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 310-184 chr17 27823514 27823820 + 2 NA Intergenic L1ME4b|LINE|L1 -23138 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 904-42 chr8 73124577 73125193 + 2 NA Intergenic Intergenic -31713 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 280-211 chr2 128993578 128993763 + 2 NA Intergenic L1MD1|LINE|L1 129070 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 410-210 chr4 32978676 32978958 + 2 NA Intergenic Intergenic 627779 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 204-93 chr14 82215114 82215228 + 2 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat -427461 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 574-192 chr9 32908262 32908698 + 2 NA Intergenic L1MEg|LINE|L1 93096 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 321-379 chr3 88360473 88360751 + 2 NA intron (NM_001368167, intron 2 of 2) L1MA4|LINE|L1 22156 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 214-45 chr10 80325398 80325589 + 2 NA Intergenic Intergenic -19252 NR_070308 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 295-259 chr20 46585624 46585789 + 2 NA intron (NM_001193340, intron 8 of 12) intron (NM_001193340, intron 8 of 12) -35052 NM_080721 128506 NM_080721 ENSG00000149635 OCSTAMP C20orf123|OC-STAMP|dJ257E24.3 osteoclast stimulatory transmembrane protein protein-coding 547-121 chr20 43003097 43003626 + 2 NA intron (NM_133170, intron 1 of 31) AluJo|SINE|Alu 34618 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 224-227 chr4 85229587 85229740 + 2 NA Intergenic L1MB1|LINE|L1 -245487 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 450-264 chr6 109185567 109185902 + 2 NA intron (NR_152435, intron 2 of 45) intron (NR_152435, intron 2 of 45) 19903 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 264-136 chr14 72740507 72740695 + 2 NA intron (NM_001280544, intron 3 of 9) intron (NM_001280544, intron 3 of 9) 152048 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 523-102 chr16 78240959 78241313 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 141482 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 287-80 chr11 18474208 18474425 + 2 NA intron (NM_001144071, intron 4 of 7) AluSg7|SINE|Alu 18460 NM_144972 160287 Hs.668877 NM_144972 ENSG00000166800 LDHAL6A LDH6A lactate dehydrogenase A like 6A protein-coding 191-129 chr22 43804245 43804357 + 2 NA intron (NM_022785, intron 2 of 31) L1MA4|LINE|L1 8004 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 438-151 chr20 55165509 55165805 + 2 NA Intergenic MIR|SINE|MIR -257386 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 246-363 chr7 21629667 21629861 + 2 NA intron (NM_001277115, intron 25 of 81) L1MA4|LINE|L1 86725 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 133-2 chr1 76375957 76376065 + 2 NA intron (NM_001349111, intron 3 of 5) L1ME4b|LINE|L1 301265 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 362 chr1 10841002 10841289 + 2 NA Intergenic Intergenic -44499 NM_017766 54897 Hs.439894 NM_017766 ENSG00000130940 CASZ1 CAS11|CST|SRG|ZNF693|dJ734G22.1 castor zinc finger 1 protein-coding 359-240 chr2 116432509 116432711 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 1088795 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 486-28 chr10 32628265 32628683 + 2 NA intron (NM_001321115, intron 19 of 43) L1MA7|LINE|L1 182334 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 246-383 chr7 112940038 112940201 + 2 NA promoter-TSS (NM_152556) promoter-TSS (NM_152556) -244 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 200-59 chr12 78909215 78909348 + 2 NA intron (NM_001291901, intron 1 of 9) intron (NM_001291901, intron 1 of 9) 44507 NM_005639 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 313-516 chr8 28292801 28292967 + 2 NA Intergenic L3|LINE|CR1 -24384 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 233-33 chr10 43518579 43518754 + 2 NA Intergenic Intergenic 49793 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 382-211 chr2 117232199 117232538 + 2 NA Intergenic L1PB2|LINE|L1 -582323 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 590-44 chr14 45015065 45015605 + 2 NA intron (NM_001308120, intron 7 of 19) (AAAT)n|Simple_repeat|Simple_repeat 53145 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 560-135 chr5 24864526 24864917 + 2 NA Intergenic Intergenic -24138 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 246-339 chr5 150941917 150942157 + 2 NA intron (NR_026867, intron 4 of 4) intron (NR_026867, intron 4 of 4) 4547 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 341-483 chr7 7840764 7841043 + 2 NA intron (NM_001302350, intron 4 of 4) intron (NM_001302350, intron 4 of 4) -122296 NM_002947 6119 Hs.487540 NM_002947 ENSG00000106399 RPA3 REPA3|RP-A p14 replication protein A3 protein-coding 307-250 chr2 132812362 132812583 + 2 NA intron (NM_207481, intron 11 of 17) intron (NM_207481, intron 11 of 17) -103085 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 408-215 chr3 122554344 122554693 + 2 NA intron (NM_031458, intron 4 of 10) MIR|SINE|MIR 9782 NM_001146102 83666 Hs.518200 NM_031458 ENSG00000138496 PARP9 ARTD9|BAL|BAL1|MGC:7868 poly(ADP-ribose) polymerase family member 9 protein-coding 222-206 chr20 39137869 39138024 + 2 NA Intergenic Intergenic 86802 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 350-80 chr11 96615793 96616037 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 107490 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 378-448 chr8 142872786 142873140 + 2 NA 3' UTR (NM_000497, exon 9 of 9) 3' UTR (NM_000497, exon 9 of 9) 6857 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 202-32 chr10 67589163 67589340 + 2 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 76409 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 291-343 chr5 42702650 42702922 + 2 NA intron (NM_001242403, intron 6 of 9) L1MA8|LINE|L1 -54032 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 329-351 chr3 11121119 11121328 + 2 NA Intergenic Intergenic -16015 NM_001098213 3269 Hs.1570 NM_000861 ENSG00000196639 HRH1 H1-R|H1R|HH1R|hisH1 histamine receptor H1 protein-coding 573-190 chr7 134208581 134209004 + 2 NA exon (NM_001365701, exon 16 of 16) exon (NM_001365701, exon 16 of 16) 81452 NM_001365701 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 180-143 chr5 152633554 152633678 + 2 NA intron (NR_109877, intron 4 of 4) intron (NR_109877, intron 4 of 4) -228337 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 417-70 chr13 77365329 77365619 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -38380 NM_015057 23077 Hs.591221 NM_015057 ENSG00000005810 MYCBP2 Myc-bp2|PAM|PHR1|Phr MYC binding protein 2 protein-coding 133-45 chr22 21798947 21799026 + 2 NA intron (NM_002745, intron 4 of 8) intron (NM_002745, intron 4 of 8) -63192 NM_013313 29799 Hs.517436 NM_013313 ENSG00000100027 YPEL1 FKSG3 yippee like 1 protein-coding 296-222 chr2 64174292 64174572 + 2 NA Intergenic Intergenic -30012 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 357-303 chr4 28707141 28707459 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -112282 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 282-18 chr1 183756969 183757216 + 2 NA intron (NM_001297669, intron 3 of 18) MamSINE1|SINE|tRNA-RTE -48028 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 520-87 chr14 49057519 49057831 + 2 NA Intergenic Intergenic 528705 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 353-329 chr3 85134525 85134771 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -72384 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 597-12 chr1 188405512 188405967 + 2 NA Intergenic Intergenic 962111 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 278-50 chr11 30853170 30853398 + 2 NA Intergenic MER31B|LTR|ERV1 139402 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 446-142 chr2 53343636 53343905 + 2 NA Intergenic L1MA4|LINE|L1 -424013 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 304-286 chr2 208561012 208561182 + 2 NA intron (NR_136588, intron 1 of 5) MLT1E1|LTR|ERVL-MaLR 18455 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 220-144 chr19 30863413 30863599 + 2 NA Intergenic Intergenic -304004 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 774-59 chr3 77911838 77912459 + 2 NA Intergenic Intergenic 136815 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 218-133 chr18 10694259 10694463 + 2 NA intron (NM_022068, intron 43 of 51) MARNA|DNA|TcMar-Mariner 32428 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 546-80 chr16 4032821 4033174 + 2 NA intron (NM_001116, intron 2 of 10) intron (NM_001116, intron 2 of 10) -82553 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 247-325 chr5 57525806 57526029 + 2 NA Intergenic Intergenic -43106 NM_001017992 345651 Hs.482167 NM_001017992 ENSG00000169067 ACTBL2 ACT actin beta like 2 protein-coding 642-74 chr3 137963275 137963768 + 2 NA Intergenic MER66B|LTR|ERV1 -35295 NM_001002026 51208 Hs.655324 NM_016369 ENSG00000066405 CLDN18 SFTA5|SFTPJ claudin 18 protein-coding 143-21 chr12 117470689 117470825 + 2 NA intron (NM_173598, intron 18 of 19) intron (NM_173598, intron 18 of 19) -108955 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 349-295 chr20 52404864 52405082 + 2 NA Intergenic L2c|LINE|L2 -212988 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 216-194 chr20 11801507 11801682 + 2 NA Intergenic Intergenic 69121 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 381-183 chr2 33406819 33407168 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie -11523 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 253-279 chr3 181150785 181150987 + 2 NA intron (NR_075091, intron 2 of 7) L1PB1|LINE|L1 -24258 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 239-445 chrX 66854510 66854689 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -215301 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 509-117 chr2 129121446 129121764 + 2 NA Intergenic L1PB3|LINE|L1 152286 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 238-240 chr3 74203097 74203259 + 2 NA Intergenic L1ME3A|LINE|L1 317962 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 686-63 chr5 44270214 44270790 + 2 NA Intergenic L1MA2|LINE|L1 -118230 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 490-161 chr2 227434324 227434719 + 2 NA Intergenic Intergenic -37611 NR_049888 100847081 NR_049888 ENSG00000284092 MIR5703 mir-5703 microRNA 5703 ncRNA 406-36 chr10 61883427 61883687 + 2 NA Intergenic Intergenic -18142 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 462-115 chr18 49793895 49794202 + 2 NA intron (NM_006111, intron 5 of 9) intron (NM_006111, intron 5 of 9) 19485 NM_006111 10449 Hs.200136 NM_006111 ENSG00000167315 ACAA2 DSAEC acetyl-CoA acyltransferase 2 protein-coding 318-297 chr2 184181095 184181323 + 2 NA Intergenic Intergenic -197766 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 249-268 chr3 102406940 102407113 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -27989 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 228-144 chr18 65396494 65396643 + 2 NA Intergenic Intergenic -353684 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 274-34 chr10 22159855 22160122 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 49995 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 527-124 chr2 45228304 45228678 + 2 NA intron (NR_033831, intron 1 of 5) intron (NR_033831, intron 1 of 5) 26450 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 319-295 chr20 55082322 55082504 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -340630 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 314-330 chr2 240361113 240361287 + 2 NA Intergenic MER5C|DNA|hAT-Charlie -74463 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 187-100 chr21 30084612 30084726 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 82136 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 177-121 chr4 103787661 103787821 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -67756 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 168-55 chr2 53846250 53846384 + 2 NA intron (NM_001164165, intron 1 of 9) intron (NM_001164165, intron 1 of 9) 2888 NR_037453 100500850 NR_037453 ENSG00000265452 MIR3682 mir-3682 microRNA 3682 ncRNA 540-161 chr4 95210919 95211326 + 2 NA intron (NM_003728, intron 10 of 15) intron (NM_003728, intron 10 of 15) 119631 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 405-271 chr6 28496495 28496876 + 2 NA Intergenic Intergenic 19108 NM_182701 257202 Hs.448570 NM_182701 ENSG00000198704 GPX6 GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1 glutathione peroxidase 6 protein-coding 248-331 chr5 148251548 148251733 + 2 NA Intergenic L1PREC2|LINE|L1 13115 NM_001363511 105378220 Hs.534838 NM_001363511 ENSG00000248109 MARCOL - MARCO like protein-coding 568-168 chr6 13832916 13833275 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 -18535 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 522-237 chr7 68917288 68917798 + 2 NA Intergenic LOR1a|LTR|ERV1 680081 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 204-221 chr4 81986720 81986870 + 2 NA Intergenic AluSc8|SINE|Alu 387196 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 302-130 chr14 65367771 65367941 + 2 NA Intergenic Intergenic -32673 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 588-159 chr8 89147912 89148384 + 2 NA Intergenic Intergenic 609563 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 288-244 chr21 44740733 44741004 + 2 NA Intergenic Intergenic -29296 NM_001272037 54084 Hs.660703 NM_144991 ENSG00000175894 TSPEAR C21orf29|DFNB98|ECTD14|TSP-EAR thrombospondin type laminin G domain and EAR repeats protein-coding 489-187 chr4 41467938 41468362 + 2 NA intron (NM_001289122, intron 1 of 25) MER46C|DNA|TcMar-Tigger -70007 NM_001330786 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 362-321 chr4 97776375 97776641 + 2 NA intron (NM_174952, intron 9 of 10) intron (NM_174952, intron 9 of 10) 366968 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 395-85 chr13 86964950 86965307 + 2 NA Intergenic Intergenic 53208 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 318-335 chr21 32182761 32182947 + 2 NA Intergenic Intergenic 96195 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 224-69 chr12 116933064 116933215 + 2 NA intron (NM_153348, intron 2 of 10) intron (NM_153348, intron 2 of 10) 22183 NM_012174 26259 Hs.624537 NM_012174 ENSG00000174989 FBXW8 FBW6|FBW8|FBX29|FBXO29|FBXW6 F-box and WD repeat domain containing 8 protein-coding 514-305 chrX 84922014 84922372 + 2 NA Intergenic L1PA13|LINE|L1 -11958 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 347-9 chr1 58030218 58030551 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 169803 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 139-83 chr6 152739359 152739480 + 2 NA Intergenic L1ME4a|LINE|L1 -11378 NM_194435 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 711-29 chr18 74415532 74416056 + 2 NA Intergenic Intergenic 6346 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 232-284 chr4 167116299 167116455 + 2 NA intron (NM_016950, intron 2 of 11) intron (NM_016950, intron 2 of 11) 118049 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 225-188 chr21 23784396 23784540 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -399633 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 361-189 chr18 70443989 70444273 + 2 NA Intergenic L1MC4|LINE|L1 -59540 NR_110764 101060542 Hs.586967 NR_110764 ENSG00000266278 LINC01910 - long intergenic non-protein coding RNA 1910 ncRNA 280-381 chr7 53311069 53311305 + 2 NA Intergenic Intergenic 275554 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 320-4 chr1 30499760 30500011 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -218887 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 577-110 chr21 44830892 44831315 + 2 NA Intergenic L1MEf|LINE|L1 -12974 NM_001286416 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 453-306 chr9 93785851 93786290 + 2 NA Intergenic L1MA2|LINE|L1 -33287 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 435-212 chr5 175414840 175415116 + 2 NA Intergenic Intergenic 29204 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 488-156 chr20 38278790 38279207 + 2 NA intron (NR_104170, intron 1 of 1) L2c|LINE|L2 -18263 NM_001029864 85449 Hs.472690 NM_001029864 ENSG00000149633 KIAA1755 - KIAA1755 protein-coding 206-132 chr2 188260155 188260326 + 2 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 27451 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 357-164 chr18 10033127 10033361 + 2 NA Intergenic Intergenic 119228 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 258-367 chr7 46438882 46439131 + 2 NA Intergenic Intergenic 258116 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 502-71 chr12 87773485 87773907 + 2 NA intron (NR_149056, intron 1 of 3) L1PA15|LINE|L1 4884 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 533-149 chr4 35030432 35030829 + 2 NA Intergenic Intergenic -760883 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 274-266 chr3 120212496 120212686 + 2 NA intron (NM_001168271, intron 2 of 8) L1MB7|LINE|L1 31704 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 144-55 chr22 44854125 44854234 + 2 NA intron (NM_001198726, intron 10 of 10) MER34B-int|LTR|ERV1 101621 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 213-53 chr11 37797558 37797737 + 2 NA Intergenic L2c|LINE|L2 -140954 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 267-29 chr1 192400364 192400566 + 2 NA Intergenic L2a|LINE|L2 83473 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 175-179 chr9 20193618 20193761 + 2 NA Intergenic Intergenic 217549 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 203-20 chr10 16262910 16263097 + 2 NA Intergenic Intergenic -173940 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 396-151 chr2 16864513 16864835 + 2 NA Intergenic Intergenic -198840 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 572-98 chr2 207994902 207995318 + 2 NA intron (NM_001080475, intron 2 of 7) intron (NM_001080475, intron 2 of 7) 30417 NM_001080475 389072 Hs.159188 NM_001080475 ENSG00000178385 PLEKHM3 DAPR|PLEKHM1L pleckstrin homology domain containing M3 protein-coding 267-304 chr4 153999352 153999593 + 2 NA Intergenic L1M5|LINE|L1 -210389 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 210-80 chr14 83536935 83537053 + 2 NA Intergenic Intergenic 894362 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 325-223 chr17 61367734 61367972 + 2 NA promoter-TSS (NR_136397) promoter-TSS (NR_136397) -149 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 476-208 chr5 7822034 7822355 + 2 NA intron (NM_020546, intron 24 of 24) intron (NM_020546, intron 24 of 24) 28939 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 299-394 chr6 53764493 53764740 + 2 NA Intergenic Intergenic -30389 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 388-370 chr9 90669137 90669460 + 2 NA Intergenic L1M4c|LINE|L1 -26474 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 328-169 chr15 37648977 37649231 + 2 NA Intergenic LTR16A1|LTR|ERVL -285503 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 213-210 chr4 81665994 81666112 + 2 NA Intergenic Intergenic -194146 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 703-36 chr16 58298675 58299270 + 2 NA Intergenic L1MEd|LINE|L1 -3925 NM_001080492 221191 Hs.411239 NM_001080492 ENSG00000103023 PRSS54 CT67|KLKBL4 serine protease 54 protein-coding 456-220 chr4 33656048 33656497 + 2 NA Intergenic Intergenic 383621 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 230-280 chr4 176416730 176416891 + 2 NA Intergenic L1M8|LINE|L1 96844 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 397-37 chr10 78326993 78327306 + 2 NA Intergenic L1MA4A|LINE|L1 59807 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 225-133 chr18 5655128 5655283 + 2 NA Intergenic Intergenic -26214 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 393-139 chr18 12935193 12935554 + 2 NA Intergenic AluSc|SINE|Alu -12611 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 424-193 chr4 65404590 65404962 + 2 NA intron (NM_001281767, intron 7 of 16) intron (NM_001281767, intron 7 of 16) 264712 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 453-63 chr14 20276438 20276790 + 2 NA Intergenic L1PB3|LINE|L1 29337 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 242-176 chr2 59007181 59007372 + 2 NA intron (NR_033873, intron 7 of 13) L3b|LINE|CR1 -210432 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 311-136 chr14 53029601 53029815 + 2 NA Intergenic Intergenic -78611 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 473-196 chr4 88601281 88601751 + 2 NA intron (NM_001271602, intron 2 of 24) intron (NM_001271602, intron 2 of 24) 9036 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 545-155 chr4 30427777 30428200 + 2 NA Intergenic Intergenic -292381 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 290-388 chr6 72529006 72529260 + 2 NA Intergenic Intergenic -92710 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 253-60 chr10 112034677 112034875 + 2 NA Intergenic Intergenic 148989 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 353-562 chr9 130016300 130016621 + 2 NA intron (NM_001363755, intron 1 of 15) intron (NM_001363755, intron 1 of 15) 26729 NM_015033 23048 Hs.189409 NM_015033 ENSG00000187239 FNBP1 FBP17 formin binding protein 1 protein-coding 486-300 chr8 131407402 131407725 + 2 NA Intergenic L1MA1|LINE|L1 -366654 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 708-3 chr1 73910433 73910918 + 2 NA Intergenic Intergenic 235996 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 315-371 chr5 33153226 33153467 + 2 NA Intergenic Intergenic -76389 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 205-97 chr15 47138876 47139029 + 2 NA Intergenic Intergenic -45137 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 211-24 chr10 15378669 15378811 + 2 NA Intergenic LTR67B|LTR|ERVL -7451 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 343-540 chr8 84116161 84116443 + 2 NA Intergenic Intergenic -66485 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 558-54 chr14 62661418 62661842 + 2 NA Intergenic L1MA8|LINE|L1 383828 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 316-25 chr1 152696351 152696639 + 2 NA Intergenic Intergenic -1850 NM_178428 353139 Hs.334054 NM_178428 ENSG00000187173 LCE2A LEP9 late cornified envelope 2A protein-coding 659-102 chr7 36155796 36156307 + 2 NA intron (NM_030636, intron 2 of 7) intron (NM_030636, intron 2 of 7) 2797 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 241-42 chr10 78617765 78617953 + 2 NA Intergenic Intergenic 350517 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 222-268 chr4 69789027 69789188 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -28487 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 137-91 chr8 77226142 77226257 + 2 NA Intergenic Intergenic -224498 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 577-207 chr9 124206448 124206985 + 2 NA Intergenic Intergenic -50890 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 538-262 chrX 62882455 62882920 + 2 NA Intergenic Intergenic 468645 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 402-92 chr15 41153325 41153668 + 2 NA Intergenic AluJo|SINE|Alu -37216 NM_017553 54617 Hs.292949 NM_017553 ENSG00000128908 INO80 INO80A|INOC1 INO80 complex ATPase subunit protein-coding 610-25 chr10 127869195 127869613 + 2 NA Intergenic L1PBa|LINE|L1 23537 NM_152311 119467 Hs.242014 NM_152311 ENSG00000180745 CLRN3 TMEM12|USH3AL1 clarin 3 protein-coding 267-63 chr11 18715986 18716172 + 2 NA intron (NM_173588, intron 10 of 22) L2b|LINE|L2 10109 NM_173588 283284 Hs.434152 NM_173588 ENSG00000179057 IGSF22 IGFN2 immunoglobulin superfamily member 22 protein-coding 237-63 chr11 114516647 114516834 + 2 NA Intergenic Intergenic 43141 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 1180-8 chr3 42730339 42731263 + 2 NA intron (NM_144719, intron 12 of 15) intron (NM_144719, intron 12 of 15) -1774 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 193-16 chr1 164141131 164141287 + 2 NA Intergenic Intergenic -418151 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 284-411 chr8 95165750 95165950 + 2 NA Intergenic Intergenic 32065 NM_024613 79666 Hs.29724 NM_024613 ENSG00000175895 PLEKHF2 EAPF|PHAFIN2|ZFYVE18 pleckstrin homology and FYVE domain containing 2 protein-coding 216-330 chr8 54312992 54313167 + 2 NA Intergenic L1ME1|LINE|L1 -17607 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 268-110 chr14 36434383 36434559 + 2 NA Intergenic AluJb|SINE|Alu 79064 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 437-59 chr13 55195997 55196338 + 2 NA Intergenic L1MC4|LINE|L1 21713 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 717-80 chr7 113561059 113561712 + 2 NA Intergenic Intergenic 357624 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 217-328 chr6 113218912 113219079 + 2 NA Intergenic Intergenic 214452 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 323-35 chr1 232919540 232919802 + 2 NA Intergenic L1M5|LINE|L1 -30940 NR_138026 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 323-26 chr1 177250646 177250944 + 2 NA intron (NM_021165, intron 2 of 7) MIR|SINE|MIR 79837 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 474-19 chr1 192160076 192160382 + 2 NA intron (NM_130782, intron 2 of 4) intron (NM_130782, intron 2 of 4) 1767 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 361-382 chr5 174261131 174261367 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -75105 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 376-263 chr3 171432479 171432826 + 2 NA intron (NM_001161563, intron 1 of 31) L1M6|LINE|L1 27753 NM_015028 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 532-43 chr12 38939787 38940282 + 2 NA Intergenic Intergenic -34443 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 608-96 chr3 47751603 47752202 + 2 NA intron (NM_003074, intron 2 of 27) AluSx3|SINE|Alu 29991 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 324-16 chr1 86044480 86044699 + 2 NA intron (NM_152890, intron 12 of 59) intron (NM_152890, intron 12 of 59) 111882 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 333-9 chr1 41168558 41168850 + 2 NA intron (NM_001172218, intron 2 of 15) L1MA6|LINE|L1 -5687 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 165-119 chr6 163886425 163886567 + 2 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat -215012 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 370-356 chr4 99164691 99164992 + 2 NA intron (NR_037884, intron 3 of 9) L1MA3|LINE|L1 -3194 NR_028270 359806 Hs.537400 NR_028270 PCNAP1 p1PCNA proliferating cell nuclear antigen pseudogene 1 pseudo 348-207 chr18 80102279 80102618 + 2 NA Intergenic MER89-int|LTR|ERV1 -6814 NM_014913 22850 Hs.131915 NM_014913 ENSG00000101544 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 209-194 chr3 29321077 29321214 + 2 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 39833 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 492-293 chrX 138451814 138452242 + 2 NA Intergenic MLT2A2|LTR|ERVL 215765 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 314-246 chr18 75448953 75449111 + 2 NA Intergenic L1MC4a|LINE|L1 -21329 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 788-10 chr11 96963534 96964125 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 455404 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 310-15 chr1 110794328 110794556 + 2 NA Intergenic L1PA16|LINE|L1 -76757 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 249-381 chr7 49549227 49549372 + 2 NA Intergenic L1MB8|LINE|L1 -224339 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 370-272 chr20 43493616 43493915 + 2 NA Intergenic Intergenic -13932 NM_032107 26013 Hs.709356 NM_015478 ENSG00000185513 L3MBTL1 H-L(3)MBT|L3MBTL|ZC2HC3|dJ138B7.3 L3MBTL histone methyl-lysine binding protein 1 protein-coding 267-310 chr5 8275772 8275993 + 2 NA Intergenic Intergenic 181682 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 307-415 chr6 33959031 33959275 + 2 NA Intergenic Intergenic 40898 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 214-312 chr8 27123774 27123940 + 2 NA Intergenic L1MB2|LINE|L1 -74894 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 430-26 chr10 36150532 36150896 + 2 NA Intergenic Intergenic 372412 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 573-152 chr5 116111234 116111766 + 2 NA intron (NM_001308080, intron 4 of 6) L1PB4|LINE|L1 26038 NM_001308080 51397 Hs.483136 NM_016144 ENSG00000145781 COMMD10 PTD002 COMM domain containing 10 protein-coding 274-41 chr10 52259346 52259554 + 2 NA intron (NM_001098512, intron 10 of 17) intron (NM_001098512, intron 10 of 17) 54678 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 505-192 chr3 41823482 41823918 + 2 NA intron (NR_136342, intron 17 of 34) intron (NR_136342, intron 17 of 34) 138403 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 303-232 chr2 181134620 181134916 + 2 NA intron (NR_130784, intron 1 of 4) L1ME1|LINE|L1 10931 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 325-353 chr3 95992373 95992687 + 2 NA Intergenic L2a|LINE|L2 -309337 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 619-75 chr20 42263734 42264263 + 2 NA intron (NM_007050, intron 13 of 30) L2|LINE|L2 -421485 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 326-512 chr7 136345297 136345497 + 2 NA Intergenic Intergenic -368038 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 324-176 chr15 49761487 49761694 + 2 NA Intergenic L1MEg|LINE|L1 140542 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 273-220 chr2 74696532 74696766 + 2 NA Intergenic L1PB1|LINE|L1 42402 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 138-36 chr18 70953843 70953955 + 2 NA Intergenic Intergenic -302945 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 224-12 chr1 85806183 85806341 + 2 NA intron (NM_152890, intron 47 of 59) L1M5|LINE|L1 -97829 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 773-33 chr4 106438186 106438854 + 2 NA intron (NR_147150, intron 2 of 3) L1MD2|LINE|L1 4896 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 223-286 chr5 116471231 116471386 + 2 NA non-coding (NR_109879, exon 3 of 3) non-coding (NR_109879, exon 3 of 3) 23810 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 445-219 chr5 53965004 53965380 + 2 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -13593 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 155-29 chr11 91878271 91878386 + 2 NA Intergenic Intergenic -346706 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 359-398 chr5 82659591 82659888 + 2 NA Intergenic Intergenic -180416 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 423-99 chr17 57543523 57543849 + 2 NA intron (NM_001322250, intron 7 of 13) intron (NM_001322250, intron 7 of 13) -20089 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 449-56 chr12 62024317 62024568 + 2 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 168397 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 245-65 chr11 21334382 21334587 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 664898 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 536-117 chr2 53072601 53072960 + 2 NA Intergenic L1MA10|LINE|L1 -370165 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 254-46 chr10 92921128 92921279 + 2 NA intron (NM_001319195, intron 8 of 21) L1M4|LINE|L1 72683 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 318-121 chr11 128381728 128381922 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 140485 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 303-259 chr21 19239592 19239869 + 2 NA Intergenic L1MA3|LINE|L1 -479918 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 887-14 chr18 2062119 2062754 + 2 NA Intergenic L1MEd|LINE|L1 509069 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 325-158 chr14 33286198 33286383 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 347411 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 430-334 chr9 77730109 77730469 + 2 NA intron (NM_002072, intron 5 of 6) intron (NM_002072, intron 5 of 6) -81967 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 355-309 chr3 5765004 5765246 + 2 NA Intergenic Intergenic -514870 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 332-369 chr4 35282073 35282329 + 2 NA Intergenic Intergenic 961738 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 377-276 chr3 164288801 164289106 + 2 NA Intergenic AluSx|SINE|Alu -117397 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 366-79 chr11 62494043 62494372 + 2 NA intron (NM_024060, intron 4 of 5) intron (NM_024060, intron 4 of 5) 51457 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 344-117 chr12 122018605 122018865 + 2 NA Intergenic L1MEg|LINE|L1 -3149 NM_020993 605 Hs.530970 NM_020993 ENSG00000110987 BCL7A BCL7 BAF chromatin remodeling complex subunit BCL7A protein-coding 190-180 chr8 123431359 123431510 + 2 NA intron (NM_018024, intron 3 of 5) intron (NM_018024, intron 3 of 5) 14660 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 306-433 chr6 65354169 65354364 + 2 NA intron (NM_198283, intron 7 of 9) intron (NM_198283, intron 7 of 9) 52848 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 430-103 chr16 12306312 12306600 + 2 NA intron (NM_032167, intron 15 of 20) intron (NM_032167, intron 15 of 20) 329722 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 524-88 chr17 52707190 52707540 + 2 NA Intergenic Intergenic -154756 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 534-179 chr4 86852504 86852875 + 2 NA Intergenic Intergenic -3305 NM_197965 345274 Hs.452996 NM_197965 ENSG00000145283 SLC10A6 SOAT solute carrier family 10 member 6 protein-coding 228-135 chr17 70775228 70775441 + 2 NA Intergenic Intergenic 426845 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 388-12 chr1 102049123 102049503 + 2 NA Intergenic Intergenic -52079 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 613-128 chr8 33286160 33286645 + 2 NA Intergenic L2b|LINE|L2 186744 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 213-159 chr20 24396353 24396503 + 2 NA Intergenic Intergenic -72771 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 455-133 chr2 147131014 147131457 + 2 NA Intergenic Intergenic 544178 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 330-493 chr7 71070224 71070432 + 2 NA Intergenic AluSp|SINE|Alu -61816 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 298-485 chr8 136643210 136643500 + 2 NA intron (NR_147196, intron 2 of 5) L2c|LINE|L2 112557 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 455-46 chr11 27950470 27950844 + 2 NA Intergenic Intergenic -106158 NR_030341 693195 NR_030341 ENSG00000207874 MIR610 MIRN610|hsa-mir-610 microRNA 610 ncRNA 221-9 chr1 90517857 90518040 + 2 NA Intergenic Intergenic -139802 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 211-302 chr8 87339853 87340049 + 2 NA intron (NM_173538, intron 8 of 10) L1M4|LINE|L1 473536 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 216-96 chr14 55482209 55482383 + 2 NA Intergenic L1MC3|LINE|L1 -41751 NM_199047 387332 Hs.528278 NM_199047 ENSG00000182521 TBPL2 TBP2|TRF3 TATA-box binding protein like 2 protein-coding 330-166 chr14 99368049 99368343 + 2 NA Intergenic L1MB8|LINE|L1 -95999 NM_138576 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 259-176 chr19 31694228 31694399 + 2 NA Intergenic Intergenic 102032 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 306-224 chr2 21296609 21296908 + 2 NA Intergenic Intergenic 172772 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 305-184 chr16 71317038 71317336 + 2 NA Intergenic Intergenic -27465 NM_001324377 55783 Hs.72782 NM_018348 ENSG00000180917 CMTR2 AFT|FTSJD1|HMTr2|MTr2 cap methyltransferase 2 protein-coding 230-167 chr2 45969776 45969949 + 2 NA intron (NM_005400, intron 2 of 14) L1ME4c|LINE|L1 318187 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 216-318 chr7 9099227 9099388 + 2 NA Intergenic L1MD1|LINE|L1 -534963 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 375-269 chr3 109843692 109843980 + 2 NA Intergenic MER57E1|LTR|ERV1 241008 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 125-36 chr3 59107580 59107675 + 2 NA Intergenic L2a|LINE|L2 -57595 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 646-120 chr7 62834114 62834585 + 2 NA Intergenic ALR/Alpha|Satellite|centr 469707 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 535-33 chr10 114356988 114357313 + 2 NA intron (NM_001001936, intron 1 of 18) intron (NM_001001936, intron 1 of 18) 47352 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 284-116 chr14 53105334 53105572 + 2 NA intron (NM_030637, intron 1 of 11) L1MC4|LINE|L1 47870 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 306-209 chr18 69357771 69358010 + 2 NA Intergenic AluSz6|SINE|Alu -42998 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 562-32 chr11 37232409 37232845 + 2 NA Intergenic MER39|LTR|ERV1 -634348 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 318-230 chr19 29219708 29219894 + 2 NA Intergenic Intergenic -6650 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 265-85 chr12 131174417 131174632 + 2 NA intron (NR_026670, intron 1 of 4) L1MA6|LINE|L1 9513 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 592-51 chr14 75625741 75626302 + 2 NA intron (NM_017791, intron 3 of 9) AluSq|SINE|Alu 20481 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 511-127 chr2 121050070 121050394 + 2 NA Intergenic LTR67B|LTR|ERVL 234970 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 235-59 chr11 15609275 15609455 + 2 NA Intergenic Intergenic -34520 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 253-437 chr9 124956572 124956813 + 2 NA intron (NM_173690, intron 18 of 18) L1ME2z|LINE|L1 -15609 NM_002077 2800 Hs.59504 NM_002077 ENSG00000136935 GOLGA1 golgin-97 golgin A1 protein-coding 194-112 chr20 56476046 56476195 + 2 NA intron (NM_001283036, intron 3 of 8) intron (NM_001283036, intron 3 of 8) 7535 NM_001283035 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 523-44 chr10 86270547 86270900 + 2 NA intron (NM_017551, intron 2 of 15) L1MEc|LINE|L1 -5935 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 451-59 chr14 45394868 45395303 + 2 NA Intergenic L1MA2|LINE|L1 -141883 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 353-134 chr14 36141693 36141979 + 2 NA intron (NR_049735, intron 3 of 3) L1MC2|LINE|L1 34815 NR_049735 100886964 Hs.742592 NR_049735 PTCSC3 - papillary thyroid carcinoma susceptibility candidate 3 ncRNA 296-263 chr20 19685214 19685428 + 2 NA exon (NM_020689, exon 12 of 17) exon (NM_020689, exon 12 of 17) -201200 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 418-67 chr14 47598186 47598463 + 2 NA intron (NM_001113498, intron 1 of 16) L1MB4|LINE|L1 76630 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 339-465 chr5 141548623 141548950 + 2 NA intron (NM_005219, intron 17 of 27) AluJb|SINE|Alu -9525 NR_038333 100505658 Hs.655458 NR_038333 ENSG00000246422 LOC100505658 - uncharacterized LOC100505658 ncRNA 483-42 chr11 82366520 82366982 + 2 NA intron (NR_120571, intron 1 of 7) L1MC3|LINE|L1 37162 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 359-386 chr5 37763946 37764279 + 2 NA Intergenic MER57-int|LTR|ERV1 70710 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 550-89 chr18 3090544 3090960 + 2 NA exon (NM_003803, exon 27 of 38) exon (NM_003803, exon 27 of 38) -78805 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 313-27 chr1 192832360 192832558 + 2 NA Intergenic MIR|SINE|MIR 23420 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 293-194 chr2 100159416 100159614 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -16925 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 467-166 chr22 48138790 48139226 + 2 NA Intergenic Intergenic -135356 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 242-20 chr1 191386426 191386622 + 2 NA Intergenic Intergenic -158026 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 190-184 chr8 129689610 129689728 + 2 NA Intergenic Intergenic -9430 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 769-34 chr2 214416105 214416745 + 2 NA intron (NM_001345929, intron 2 of 2) intron (NM_001345929, intron 2 of 2) 5371 NR_159945 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 301-184 chr19 40017385 40017536 + 2 NA 3' UTR (NM_001297763, exon 7 of 7) 3' UTR (NM_001297763, exon 7 of 7) 20400 NM_001297763 339327 Hs.125008 NM_178544 ENSG00000187187 ZNF546 ZNF49 zinc finger protein 546 protein-coding 206-133 chr2 192560409 192560609 + 2 NA Intergenic L1MC3|LINE|L1 -189336 NR_152587 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 249-306 chr4 137016803 137016976 + 2 NA intron (NR_149105, intron 2 of 3) intron (NR_149105, intron 2 of 3) -176867 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 294-185 chr19 23053872 23054034 + 2 NA TTS (NR_110745) TTS (NR_110745) 7312 NR_110745 101929144 Hs.531631 NR_110745 ENSG00000261615 LINC01858 - long intergenic non-protein coding RNA 1858 ncRNA 379-257 chr5 16055231 16055504 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 120185 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 272-276 chr3 102797451 102797715 + 2 NA Intergenic Intergenic 362568 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 206-154 chr3 28896267 28896441 + 2 NA Intergenic L1MB7|LINE|L1 321076 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 278-188 chr19 24369898 24370097 + 2 NA Intergenic ALR/Alpha|Satellite|centr -206550 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 347-222 chr2 71848928 71849180 + 2 NA Intergenic Intergenic 298808 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 494-255 chr6 145248335 145248692 + 2 NA Intergenic L2a|LINE|L2 438364 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 343-408 chr5 3351316 3351564 + 2 NA Intergenic Intergenic -101376 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 319-2 chr1 33889404 33889657 + 2 NA intron (NM_052896, intron 5 of 69) L1ME3G|LINE|L1 20574 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 171-102 chr5 42723397 42723500 + 2 NA Intergenic LTR87|LTR|ERVL? -33370 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 201-149 chr3 17955282 17955458 + 2 NA Intergenic L1MC5a|LINE|L1 -7182 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 172-23 chr10 130522372 130522469 + 2 NA Intergenic L1MEg|LINE|L1 386011 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 551-26 chr10 123185327 123185866 + 2 NA Intergenic AluJr|SINE|Alu 31194 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 284-240 chr20 61651709 61651934 + 2 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 52060 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 219-111 chr15 47043726 47043907 + 2 NA Intergenic Intergenic -140273 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 303-458 chr8 92335029 92335282 + 2 NA Intergenic L1PA11|LINE|L1 -231770 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 1057-3 chr14 72766382 72767081 + 2 NA intron (NM_001280544, intron 2 of 9) AluJo|SINE|Alu 125918 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 486-306 chr9 28356314 28356682 + 2 NA intron (NM_001354574, intron 4 of 5) MIRb|SINE|MIR 362807 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 294-127 chr14 78791296 78791534 + 2 NA intron (NR_073547, intron 8 of 20) HAL1b|LINE|L1 387696 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 134-86 chr8 83529479 83529548 + 2 NA Intergenic Intergenic 125755 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 275-358 chr8 58928457 58928637 + 2 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) 190600 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 698-46 chr20 28776100 28776630 + 2 NA Intergenic L1PA2|LINE|L1 -173700 NR_132315 100289097 Hs.529357 NR_132315 ENSG00000282826 FRG1CP - FSHD region gene 1 family member C, pseudogene pseudo 472-215 chr3 157407837 157408226 + 2 NA intron (NM_024621, intron 6 of 13) intron (NM_024621, intron 6 of 13) -28819 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 128-64 chr6 144576267 144576386 + 2 NA intron (NM_007124, intron 49 of 73) intron (NM_007124, intron 49 of 73) 170671 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 591-71 chr2 78128659 78129041 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 40120 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 526-82 chr14_GL000225v1_random 118380 118831 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 325-133 chr12 86750809 86751036 + 2 NA intron (NM_001351286, intron 1 of 7) intron (NM_001351286, intron 1 of 7) -5773 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 412-218 chr3 119143383 119143667 + 2 NA intron (NM_152538, intron 1 of 8) L1M4|LINE|L1 2495 NM_152538 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 311-198 chr17 53262452 53262623 + 2 NA Intergenic Intergenic 277032 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 233 chr1 25482858 25483083 + 2 NA intron (NM_018202, intron 6 of 10) intron (NM_018202, intron 6 of 10) 52073 NM_018202 55219 Hs.189782 NM_018202 ENSG00000204178 MACO1 MACOILIN|TMEM57 macoilin 1 protein-coding 360-2 chr1 19499435 19499763 + 2 NA Intergenic Intergenic -14060 NM_004930 832 Hs.432760 NM_004930 ENSG00000077549 CAPZB CAPB|CAPPB|CAPZ capping actin protein of muscle Z-line subunit beta protein-coding 242-125 chr16 51872494 51872671 + 2 NA Intergenic Intergenic 110063 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 703-88 chr7 79045874 79046400 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 37149 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 370-263 chr2 226260715 226260965 + 2 NA Intergenic L2a|LINE|L2 118046 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 554-198 chr7 153000756 153001277 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 241264 NM_020445 57180 Hs.647117 NM_020445 ENSG00000133627 ACTR3B ARP11|ARP3BETA actin related protein 3B protein-coding 341-186 chr16 52760362 52760591 + 2 NA Intergenic Intergenic -153501 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 373-369 chr6 160828244 160828469 + 2 NA Intergenic Intergenic 126163 NM_000301 5340 Hs.143436 NM_000301 ENSG00000122194 PLG - plasminogen protein-coding 183-42 chr12 131165929 131166050 + 2 NA intron (NR_026670, intron 1 of 4) intron (NR_026670, intron 1 of 4) 978 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 191-168 chr5 44551761 44551922 + 2 NA Intergenic L1M1|LINE|L1 -41559 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 269-369 chr7 5010556 5010803 + 2 NA Intergenic L1PB|LINE|L1 -35181 NM_021163 57786 Hs.396178 NM_021163 ENSG00000146587 RBAK ZNF769 RB associated KRAB zinc finger protein-coding 319-454 chr6 46231171 46231369 + 2 NA intron (NM_001251973, intron 4 of 4) MLT1C|LTR|ERVL-MaLR -45054 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 358-284 chr3 534555 534760 + 2 NA Intergenic Intergenic -57448 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 300-449 chr8 40232811 40233048 + 2 NA Intergenic LTR8B|LTR|ERV1 79447 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 276-487 chrX 57350346 57350522 + 2 NA intron (NR_148564, intron 5 of 11) L1PB4|LINE|L1 63580 NR_148557 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 396-106 chr14 68024392 68024598 + 2 NA intron (NM_133509, intron 7 of 10) L1PA16|LINE|L1 200903 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 335-484 chr7 3425489 3425740 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 124362 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 262-399 chr7 53064600 53064734 + 2 NA Intergenic Intergenic 29034 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 194-82 chr19 28652283 28652426 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 45666 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 242-264 chr4 66779341 66779524 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 502608 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 154-47 chr2 33893450 33893565 + 2 NA intron (NR_126403, intron 2 of 5) AluJo|SINE|Alu -165290 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 358-499 chr8 134002835 134003044 + 2 NA Intergenic Intergenic 116443 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 283-46 chr10 15060399 15060626 + 2 NA intron (NM_018324, intron 4 of 8) L1MEc|LINE|L1 16569 NM_001039702 55301 Hs.24309 NM_018324 ENSG00000152463 OLAH AURA1|SAST|TE2|THEDC1 oleoyl-ACP hydrolase protein-coding 248-74 chr12 8492204 8492372 + 2 NA Intergenic Intergenic -21215 NM_080387 338339 Hs.351811 NM_080387 ENSG00000166527 CLEC4D CD368|CLEC-6|CLEC6|CLECSF8|Dectin-3|MCL|MPCL C-type lectin domain family 4 member D protein-coding 410-45 chr11 22865857 22866163 + 2 NA Intergenic LTR28|LTR|ERV1 -5536 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 307-38 chr10 15924545 15924811 + 2 NA Intergenic L1M4c|LINE|L1 -64145 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 580-121 chr3 132810365 132810691 + 2 NA intron (NR_002811, intron 5 of 10) L1MB3|LINE|L1 -88069 NR_037804 100532724 Hs.511991 NR_037804 ENSG00000274810 NPHP3-ACAD11 NPHP3 NPHP3-ACAD11 readthrough (NMD candidate) ncRNA 334-421 chr5 59904302 59904599 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -10724 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 135-16 chr14 40624531 40624608 + 2 NA Intergenic Intergenic -330142 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 436-21 chr1 199800651 199800927 + 2 NA Intergenic Intergenic -226921 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 253-231 chr21 15904896 15905121 + 2 NA Intergenic L1M4|LINE|L1 -165480 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 402-267 chr5 40692380 40692684 + 2 NA 3' UTR (NM_000958, exon 3 of 3) 3' UTR (NM_000958, exon 3 of 3) 12617 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 330-515 chr8 76094943 76095186 + 2 NA Intergenic L1M4c|LINE|L1 -311590 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 210-202 chr4 84114928 84115078 + 2 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 184166 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 468-71 chr13 100917617 100918042 + 2 NA intron (NR_047687, intron 2 of 7) intron (NR_047687, intron 2 of 7) 26535 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 418-29 chr10 43553017 43553403 + 2 NA Intergenic L1M4|LINE|L1 15249 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 198-59 chr13 102438502 102438666 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -36141 NM_001321947 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 400-110 chr15 59328515 59328873 + 2 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 44177 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 352-61 chr10 112848821 112849062 + 2 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 25445 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 495-118 chr2 151906263 151906667 + 2 NA intron (NM_000726, intron 2 of 13) intron (NM_000726, intron 2 of 13) 65587 NM_001330118 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 543-49 chr11 50232039 50232447 + 2 NA Intergenic Intergenic 66219 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 519-225 chr8 20654927 20655414 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -40244 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 869-46 chr8 118530003 118530663 + 2 NA intron (NM_001101676, intron 2 of 4) L1PA15|LINE|L1 -90668 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 435-84 chr14 92848957 92849372 + 2 NA Intergenic Intergenic 54859 NM_005113 9950 Hs.104320 NM_005113 ENSG00000066455 GOLGA5 GOLIM5|RFG5|ret-II golgin A5 protein-coding 432-207 chr4 112821370 112821640 + 2 NA intron (NM_001354275, intron 1 of 43) AluJr|SINE|Alu 3508 NM_001354239 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 398-242 chr4 80102327 80102690 + 2 NA Intergenic Intergenic -29036 NM_001286780 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 250-54 chr10 114076766 114076959 + 2 NA Intergenic Intergenic 32996 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 207-128 chr2 33060985 33061135 + 2 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -73537 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 516-28 chr11 3177813 3178246 + 2 NA Intergenic L1ME1|LINE|L1 -12719 NM_020896 114879 Hs.436166 NM_020896 ENSG00000021762 OSBPL5 OBPH1|ORP5 oxysterol binding protein like 5 protein-coding 276-424 chr7 22608285 22608533 + 2 NA Intergenic L2b|LINE|L2 45072 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 375-151 chr16 2740993 2741309 + 2 NA non-coding (NR_027274, exon 3 of 6) non-coding (NR_027274, exon 3 of 6) 3646 NR_027274 100128788 Hs.311208 NR_027274 ENSG00000205913 SRRM2-AS1 - SRRM2 antisense RNA 1 ncRNA 171-56 chr2 114539280 114539406 + 2 NA intron (NM_001321908, intron 2 of 25) L2b|LINE|L2 77766 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 384-219 chr3 40970238 40970492 + 2 NA Intergenic Intergenic -229140 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 346-288 chr21 37280437 37280681 + 2 NA Intergenic AluSg7|SINE|Alu -12451 NM_001331022 10311 Hs.369488 NM_006052 ENSG00000157538 VPS26C DCRA|DSCR3|DSCRA VPS26 endosomal protein sorting factor C protein-coding 660-42 chr2 101568505 101569060 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -93670 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 678-14 chr11 81454515 81455160 + 2 NA Intergenic Intergenic 435999 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 272-434 chr8 19380341 19380486 + 2 NA intron (NM_001363110, intron 7 of 8) L1MB3|LINE|L1 66437 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 354-200 chr2 11907833 11908123 + 2 NA Intergenic Intergenic -70992 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 707-88 chr6 40523027 40523659 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 64021 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 190-135 chr4 61230020 61230149 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 27912 NM_001371342 277-340 chr5 180238349 180238551 + 2 NA intron (NM_001364608, intron 11 of 12) intron (NM_001364608, intron 11 of 12) -29239 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 556-239 chr9 26268397 26268845 + 2 NA Intergenic Intergenic 201946 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 456-199 chr3 68112762 68113081 + 2 NA intron (NM_001252216, intron 2 of 4) L1ME3B|LINE|L1 108674 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 258-140 chr15 36153406 36153598 + 2 NA Intergenic Intergenic 226646 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 137 chr1 11557764 11557873 + 2 NA Intergenic Intergenic -51713 NR_104624 101929181 Hs.568616 NR_104624 ENSG00000235643 LINC01647 - long intergenic non-protein coding RNA 1647 ncRNA 699-94 chr6 154254608 154255155 + 2 NA intron (NM_001130699, intron 4 of 12) intron (NM_001130699, intron 4 of 12) 75200 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 433-81 chr14 70333333 70333665 + 2 NA intron (NM_001202549, intron 3 of 4) L1M1|LINE|L1 26184 NM_001204090 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 277-246 chr3 18699830 18700050 + 2 NA Intergenic Intergenic -254348 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 627-49 chr19 52478903 52479496 + 2 NA intron (NM_001366182, intron 3 of 5) HERVK3-int|LTR|ERVK 25646 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 209-71 chr12 59680318 59680499 + 2 NA intron (NM_001270622, intron 2 of 5) intron (NM_001270622, intron 2 of 5) -8962 NR_073056 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 188-44 chr12 115714362 115714523 + 2 NA Intergenic Intergenic 434212 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 271-335 chr5 22585118 22585299 + 2 NA intron (NM_004061, intron 1 of 14) L1MEd|LINE|L1 268136 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 736-61 chr4 28971242 28971920 + 2 NA Intergenic Intergenic -25203 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 121-57 chr6 142354682 142354747 + 2 NA intron (NM_198569, intron 2 of 24) intron (NM_198569, intron 2 of 24) 52707 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 291-90 chr12 19061511 19061733 + 2 NA Intergenic L1ME3B|LINE|L1 -68111 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 358-352 chr4 173911602 173911810 + 2 NA intron (NR_146487, intron 1 of 2) intron (NR_146487, intron 1 of 2) 14433 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 356-201 chr17 79674627 79674837 + 2 NA Intergenic Intergenic 32517 NR_039893 100616170 NR_039893 ENSG00000266665 MIR4739 mir-4739 microRNA 4739 ncRNA 167-68 chr20 10576799 10576930 + 2 NA intron (NM_001009608, intron 4 of 7) intron (NM_001009608, intron 4 of 7) 72831 NR_106930 102465525 NR_106930 ENSG00000273745 MIR6870 hsa-mir-6870 microRNA 6870 ncRNA 741-41 chr3 89867917 89868611 + 2 NA Intergenic L1PA8A|LINE|L1 760643 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 248-77 chr12 25470118 25470299 + 2 NA Intergenic Intergenic 83075 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 478-14 chr1 195240203 195240483 + 2 NA Intergenic L1MEh|LINE|L1 848372 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 163-13 chr1 233404366 233404523 + 2 NA Intergenic L1MD|LINE|L1 76720 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 344-304 chr3 25850604 25850896 + 2 NA Intergenic Intergenic 22945 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 226-189 chr2 209446888 209447069 + 2 NA intron (NM_001039538, intron 1 of 14) intron (NM_001039538, intron 1 of 14) 22931 NM_001363910 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 329-481 chr5 161375478 161375656 + 2 NA intron (NM_000813, intron 6 of 9) intron (NM_000813, intron 6 of 9) 172557 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 172-55 chr2 32566865 32567006 + 2 NA intron (NR_125793, intron 1 of 1) L1MB8|LINE|L1 7883 NR_125793 103752586 Hs.666092 NR_125793 ENSG00000279897 BIRC6-AS2 linc-birc6|megamind BIRC6 antisense RNA 2 ncRNA 217-33 chr10 25732365 25732506 + 2 NA non-coding (NR_108067, exon 5 of 5) non-coding (NR_108067, exon 5 of 5) 80723 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 431-65 chr12 53781285 53781706 + 2 NA Intergenic Intergenic -24461 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 336-30 chr1 110830443 110830642 + 2 NA Intergenic Intergenic -40657 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 367-121 chr14 49432245 49432569 + 2 NA Intergenic L1PA15|LINE|L1 153973 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 232-401 chr9 82121403 82121577 + 2 NA Intergenic Intergenic 132718 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 183-104 chr4 70023472 70023645 + 2 NA Intergenic L2a|LINE|L2 -4901 NM_000200 3347 Hs.654442 NM_000200 ENSG00000205649 HTN3 HIS2|HTN2|HTN5|PB histatin 3 protein-coding 251-106 chr15 46432090 46432319 + 2 NA Intergenic Intergenic 727009 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 442-212 chr4 78196427 78196719 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) -92412 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 314-201 chr16 6868043 6868350 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 94387 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 325-516 chr7 111058630 111058839 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -32272 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 334-287 chr2 146213774 146213965 + 2 NA Intergenic Intergenic -373188 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 390-85 chr14 25446487 25446782 + 2 NA Intergenic MIR|SINE|MIR -396337 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 277-146 chr17 22651822 22652075 + 2 NA Intergenic Intergenic 128837 NM_001190452 100462977 Hs.740185 NM_001190452 ENSG00000256618 MTRNR2L1 HN1 MT-RNR2 like 1 protein-coding 343-264 chr2 119123241 119123471 + 2 NA Intergenic Intergenic 35395 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 627-16 chr11 38487601 38488030 + 2 NA Intergenic Intergenic 158541 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 326-385 chr4 140831275 140831579 + 2 NA Intergenic Intergenic -75042 NM_015130 23158 Hs.480819 NM_015130 ENSG00000109436 TBC1D9 GRAMD9|MDR1 TBC1 domain family member 9 protein-coding 466-288 chr8 144566225 144566593 + 2 NA intron (NM_025251, intron 2 of 10) AluJb|SINE|Alu -37298 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 307-325 chr4 84405 84627 + 2 NA intron (NM_001286054, intron 4 of 4) L1MB2|LINE|L1 31195 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 442-172 chr22 22177545 22177914 + 2 NA Intergenic Intergenic -67057 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 331-117 chr12 41072062 41072388 + 2 NA 3' UTR (NM_175038, exon 22 of 22) 3' UTR (NM_175038, exon 22 of 22) -116095 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 302-468 chr8 127496386 127496545 + 2 NA Intergenic MIRb|SINE|MIR -14326 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 433-146 chr2 220615078 220615404 + 2 NA Intergenic MER3|DNA|hAT-Charlie -708676 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 280-442 chr9 92274952 92275132 + 2 NA intron (NR_073446, intron 8 of 32) intron (NR_073446, intron 8 of 32) 17505 NR_037424 100500918 NR_037424 ENSG00000281156 MIR3651 mir-3651 microRNA 3651 ncRNA 184-41 chr11 81523188 81523354 + 2 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat 367565 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 252-123 chr14 84887449 84887619 + 2 NA Intergenic L1M1|LINE|L1 -384398 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 325-88 chr10 124171178 124171460 + 2 NA Intergenic Intergenic -77721 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 368-154 chr14 84648501 84648691 + 2 NA Intergenic L2a|LINE|L2 -623336 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 331-364 chr3 139085252 139085532 + 2 NA Intergenic Intergenic -18793 NR_026783 60467 Hs.512673 NM_021812 ENSG00000232416 BPESC1 NCRNA00187 blepharophimosis, epicanthus inversus and ptosis candidate 1 ncRNA 203-238 chr8 120968781 120968940 + 2 NA Intergenic MIRc|SINE|MIR -156814 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 298-108 chr13 58629747 58629921 + 2 NA Intergenic Intergenic -396717 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 348-420 chr5 104711901 104712164 + 2 NA Intergenic L1PA15-16|LINE|L1 -387442 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 391-44 chr10 88176529 88176863 + 2 NA Intergenic L1MA5|LINE|L1 313071 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 299-498 chrX 52110386 52110592 + 2 NA Intergenic L1M3|LINE|L1 -41217 NM_001242362 81557 Hs.522650 NM_030801 ENSG00000187243 MAGED4B - MAGE family member D4B protein-coding 425-260 chr6 76152253 76152593 + 2 NA Intergenic Intergenic -79745 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 238-109 chr14 88078162 88078342 + 2 NA intron (NR_046094, intron 2 of 3) LTR78B|LTR|ERV1 -51940 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 639-10 chr10 21830169 21830684 + 2 NA intron (NM_022365, intron 8 of 11) L1MB4|LINE|L1 173304 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 268-133 chr15 88520839 88521016 + 2 NA intron (NR_026645, intron 3 of 4) L2a|LINE|L2 25448 NR_135743 55070 Hs.655064 NM_017996 ENSG00000140543 DET1 - DET1 partner of COP1 E3 ubiquitin ligase protein-coding 323-68 chr10 106968801 106969049 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 195781 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 471-44 chr11 40453708 40454019 + 2 NA intron (NM_020929, intron 2 of 4) L1MB7|LINE|L1 -160733 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 424-286 chr8 137650975 137651248 + 2 NA Intergenic Intergenic -237523 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 262-209 chr2 99529492 99529739 + 2 NA Intergenic Intergenic -39598 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 263-147 chr16 79939021 79939250 + 2 NA Intergenic Intergenic 143886 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 256-458 chr9 132460284 132460486 + 2 NA intron (NM_001282957, intron 1 of 5) L1MB5|LINE|L1 50174 NM_001282957 389799 Hs.201709 NM_207417 ENSG00000188523 CFAP77 C9orf171 cilia and flagella associated protein 77 protein-coding 423-223 chr5 58155334 58155718 + 2 NA Intergenic Intergenic -33185 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 294-262 chr20 48081929 48082196 + 2 NA Intergenic AluJr|SINE|Alu -91945 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 511-148 chr20 51069184 51069627 + 2 NA Intergenic Intergenic -46298 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 350-285 chr21 22579998 22580251 + 2 NA Intergenic Intergenic 481507 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 283-110 chr12 127091546 127091709 + 2 NA Intergenic AluJr|SINE|Alu -31230 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 352-400 chr5 13228632 13228926 + 2 NA Intergenic Intergenic -195893 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 714-62 chr5 153279142 153279697 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -211105 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 352-432 chr5 133127493 133127712 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 75589 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 283-416 chr7 45961736 45961963 + 2 NA Intergenic L1MC5|LINE|L1 -40577 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 342-231 chr2 51878917 51879147 + 2 NA intron (NR_135237, intron 7 of 10) L1MA2|LINE|L1 -491616 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 182-91 chr2 81157074 81157221 + 2 NA Intergenic Intergenic 309799 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 317-41 chr10 9514009 9514275 + 2 NA Intergenic Intergenic -218549 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 352-183 chr17 55874024 55874341 + 2 NA Intergenic L1M5|LINE|L1 123077 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 397-339 chr8 89317200 89317523 + 2 NA Intergenic Intergenic 440350 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 207-127 chr2 25618018 25618205 + 2 NA intron (NM_033147, intron 4 of 19) intron (NM_033147, intron 4 of 19) 32111 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 219-340 chr7 82899541 82899703 + 2 NA intron (NM_033026, intron 9 of 24) intron (NM_033026, intron 9 of 24) 263262 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 310-309 chr22 25542424 25542630 + 2 NA Intergenic Intergenic -22148 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 275-341 chr7 94353719 94353881 + 2 NA Intergenic L2c|LINE|L2 38392 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 311-12 chr1 76848451 76848704 + 2 NA Intergenic L1M3|LINE|L1 -18903 NM_001320274 81849 Hs.149201 NM_030965 ENSG00000117069 ST6GALNAC5 SIAT7-E|SIAT7E|ST6GalNAcV ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 5 protein-coding 748-87 chr8 141748815 141749191 + 2 NA Intergenic L1ME1|LINE|L1 37310 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 119-30 chr2 51258366 51258475 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 225819 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 344-429 chr6 102149151 102149419 + 2 NA Intergenic Intergenic 750300 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 366-193 chr2 49462598 49462800 + 2 NA Intergenic L1M1|LINE|L1 -308172 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 241-244 chr3 120825334 120825521 + 2 NA intron (NR_135570, intron 1 of 1) AluJb|SINE|Alu 10930 NR_135570 101926983 Hs.553055 NR_135570 ENSG00000243593 LINC02049 - long intergenic non-protein coding RNA 2049 ncRNA 408-47 chr10 80933116 80933449 + 2 NA Intergenic L1M4|LINE|L1 283485 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 281-360 chr5 68835319 68835476 + 2 NA Intergenic L1ME4a|LINE|L1 194530 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 396-172 chr2 117233571 117233821 + 2 NA Intergenic L1PA7|LINE|L1 -580995 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 335-456 chr6 38441807 38442016 + 2 NA intron (NM_001172418, intron 5 of 10) MIR|SINE|MIR -39685 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 279-389 chr7 41166207 41166441 + 2 NA Intergenic Intergenic 64720 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 529-215 chr8 87661133 87661560 + 2 NA Intergenic MLT2B3|LTR|ERVL 212669 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 294-228 chr2 121112119 121112351 + 2 NA Intergenic L1MC1|LINE|L1 172967 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 392 chr1 40808610 40808850 + 2 NA intron (NM_004700, intron 1 of 13) L2|LINE|L2 24943 NM_172163 9132 Hs.473058 NM_004700 ENSG00000117013 KCNQ4 DFNA2|DFNA2A|KV7.4 potassium voltage-gated channel subfamily Q member 4 protein-coding 219-137 chr18 3348270 3348417 + 2 NA intron (NR_146506, intron 1 of 2) intron (NR_146506, intron 1 of 2) 2216 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 333-177 chr16 77083142 77083329 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -107955 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 324-133 chr13 20748315 20748625 + 2 NA intron (NM_001318939, intron 2 of 4) HAL1|LINE|L1 25488 NM_174928 221143 Hs.26674 NM_174928 ENSG00000150456 EEF1AKMT1 ESP13|N6AMT2 EEF1A lysine methyltransferase 1 protein-coding 141-76 chr5 152349271 152349364 + 2 NA Intergenic MIRb|SINE|MIR 55962 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 256-200 chr2 82462117 82462351 + 2 NA Intergenic Intergenic -394569 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 350-231 chr2 106274359 106274594 + 2 NA Intergenic Intergenic -80137 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 279-210 chr2 218746832 218747028 + 2 NA intron (NM_014640, intron 8 of 19) intron (NM_014640, intron 8 of 19) -35217 NM_000784 1593 Hs.516700 NM_000784 ENSG00000135929 CYP27A1 CP27|CTX|CYP27 cytochrome P450 family 27 subfamily A member 1 protein-coding 235-382 chr9 7684790 7684952 + 2 NA Intergenic L2a|LINE|L2 114907 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 347-378 chr5 20466807 20466997 + 2 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 108811 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 550-86 chr17 34124771 34125258 + 2 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 31792 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 452-270 chr8 87320184 87320577 + 2 NA intron (NM_173538, intron 8 of 10) intron (NM_173538, intron 8 of 10) 453965 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 227-262 chr4 105535592 105535719 + 2 NA Intergenic L1M5|LINE|L1 -16965 NM_017700 54848 Hs.585224 NM_017700 ENSG00000236699 ARHGEF38 - Rho guanine nucleotide exchange factor 38 protein-coding 541-139 chr20 40028127 40028495 + 2 NA Intergenic Intergenic 23850 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 518-195 chr4 32080263 32080765 + 2 NA intron (NR_125936, intron 1 of 2) L1PB3|LINE|L1 -58092 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 285-11 chr1 97888098 97888283 + 2 NA intron (NM_000110, intron 1 of 22) L1MB8|LINE|L1 32869 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 305-15 chr1 75667517 75667810 + 2 NA Intergenic Intergenic -51500 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 249-139 chr16 51705706 51705856 + 2 NA Intergenic L1MEc|LINE|L1 -56738 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 230-391 chr8 140501725 140501940 + 2 NA Intergenic Intergenic -9466 NR_023360 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 280-198 chr2 80821999 80822239 + 2 NA Intergenic Intergenic 508740 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 387-230 chr3 101307517 101307788 + 2 NA intron (NM_016247, intron 2 of 18) THE1C|LTR|ERVL-MaLR 12923 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 399-231 chr4 102086997 102087231 + 2 NA Intergenic L2a|LINE|L2 237198 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 276-65 chr10 87639736 87639893 + 2 NA Intergenic HERVL-int|LTR|ERVL -20064 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 240-259 chr20 24959368 24959557 + 2 NA intron (NM_003650, intron 3 of 3) L1MC4|LINE|L1 10193 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 210-89 chr15 97002053 97002238 + 2 NA Intergenic AluJr|SINE|Alu 218710 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 331-110 chr12 17790278 17790450 + 2 NA Intergenic (AGT)n|Simple_repeat|Simple_repeat 117065 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 534-37 chr10 109276957 109277276 + 2 NA Intergenic L3|LINE|CR1 646130 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 572-45 chr12 117642630 117642970 + 2 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -280998 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 221-261 chr6 40346695 40346832 + 2 NA intron (NR_038887, intron 1 of 2) MIR|SINE|MIR 9243 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 292-275 chr3 4760412 4760687 + 2 NA intron (NM_001168272, intron 43 of 60) MLT1D|LTR|ERVL-MaLR -8959 NR_004428 100126791 Hs.663059 NR_004428 ENSG00000235947 EGOT EGO|NCRNA00190 eosinophil granule ontogeny transcript ncRNA 313-318 chr21 44672074 44672381 + 2 NA intron (NM_144991, intron 1 of 11) L1MA4A|LINE|L1 -5300 NM_181684 353323 Hs.567902 NM_181684 ENSG00000221864 KRTAP12-2 KAP12.2|KRTAP12.2 keratin associated protein 12-2 protein-coding 327-542 chrX 75705371 75705690 + 2 NA Intergenic L1PA10|LINE|L1 37549 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 332-528 chr8 87078538 87078803 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 212255 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 554-21 chr1 223441787 223442135 + 2 NA Intergenic Intergenic 48546 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 781-33 chr2 65509044 65509712 + 2 NA Intergenic L1MD3|LINE|L1 -76779 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 198-240 chr8 47536684 47536833 + 2 NA intron (NM_001352958, intron 10 of 21) L1MC2|LINE|L1 -117330 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 296-289 chr3 34085872 34086064 + 2 NA Intergenic L1MA5A|LINE|L1 287338 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 584-53 chr17 61240893 61241362 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 126577 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 181-134 chr5 152750807 152750920 + 2 NA intron (NR_109877, intron 3 of 4) L1MA9|LINE|L1 221486 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 535-94 chr16 21976202 21976670 + 2 NA intron (NM_003366, intron 12 of 13) AluJr|SINE|Alu 23075 NM_003366 7385 Hs.528803 NM_003366 ENSG00000140740 UQCRC2 MC3DN5|QCR2|UQCR2 ubiquinol-cytochrome c reductase core protein 2 protein-coding 294-251 chr2 222137747 222137997 + 2 NA Intergenic L1MEc|LINE|L1 -160275 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 354-498 chr9 91486882 91487077 + 2 NA Intergenic Intergenic -62353 NM_001290000 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 226-342 chr8 81778883 81779041 + 2 NA Intergenic Intergenic 46514 NM_152284 92421 Hs.183861 NM_152284 ENSG00000164695 CHMP4C SNF7-3|Shax3|VPS32C charged multivesicular body protein 4C protein-coding 397-51 chr11 79535820 79536034 + 2 NA Intergenic MIRc|SINE|MIR -94897 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 236-163 chr2 40706242 40706382 + 2 NA Intergenic Intergenic -193877 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 305-132 chr12 126830198 126830474 + 2 NA Intergenic L1MB1|LINE|L1 44354 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 119-9 chr10 53290325 53290426 + 2 NA Intergenic Intergenic -518675 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 304-527 chr8 110217426 110217644 + 2 NA Intergenic L1MA2|LINE|L1 -241764 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 227-385 chr9 4124757 4124940 + 2 NA intron (NM_001042413, intron 3 of 10) MIR3|SINE|MIR 27335 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 293-87 chr12 68388146 68388396 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -55857 NM_001354969 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 356-401 chr5 79918849 79919189 + 2 NA Intergenic L1PA13|LINE|L1 -17560 NR_131226 105616916 Hs.590325 NR_131226 ENSG00000250888 LINC01455 MDONA|TCONS_00009433 long intergenic non-protein coding RNA 1455 ncRNA 372-251 chr2 117012008 117012324 + 2 NA Intergenic L1PA2|LINE|L1 -802525 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 350-165 chr16 61577485 61577676 + 2 NA Intergenic L1MA9|LINE|L1 458858 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 191-51 chr14 29242859 29243021 + 2 NA Intergenic Intergenic -457153 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 354-136 chr14 52268366 52268587 + 2 NA exon (NM_000953, exon 1 of 2) exon (NM_000953, exon 1 of 2) 778 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 395-24 chr1 216909269 216909507 + 2 NA intron (NM_001350123, intron 2 of 8) intron (NM_001350123, intron 2 of 8) 30285 NM_001243513 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 498-92 chr14 85853340 85853733 + 2 NA Intergenic Intergenic -81142 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 720-5 chr1 244069023 244069576 + 2 NA Intergenic Intergenic 16094 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 215-332 chr9 24359980 24360188 + 2 NA Intergenic Intergenic 185592 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 579-95 chr21 31740067 31740478 + 2 NA Intergenic L1MEc|LINE|L1 -8154 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 356-506 chr9 93605465 93605660 + 2 NA intron (NM_005392, intron 1 of 21) L1MC1|LINE|L1 10721 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 290-87 chr11 84646428 84646646 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 74405 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 237-35 chr10 75692340 75692562 + 2 NA intron (NR_131178, intron 1 of 7) L1MCa|LINE|L1 -20004 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 297-191 chr19 49287133 49287412 + 2 NA Intergenic Intergenic 21596 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 567-153 chr6 18877990 18878461 + 2 NA Intergenic L1MB2|LINE|L1 302255 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 670-48 chr18 5821726 5822229 + 2 NA Intergenic L1MB1|LINE|L1 -18718 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 393-361 chr8 101386680 101386930 + 2 NA Intergenic Intergenic 17912 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 457-82 chr16 35565986 35566267 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -58956 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 580-143 chr4 107489575 107489984 + 2 NA Intergenic L1PA6|LINE|L1 230455 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 226-57 chr11 92810344 92810531 + 2 NA intron (NM_001008781, intron 12 of 24) intron (NM_001008781, intron 12 of 24) 105191 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 300-150 chr17 21955566 21955740 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat -247342 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 304-289 chr2 230259313 230259515 + 2 NA intron (NM_001278453, intron 9 of 23) AluSx|SINE|Alu 33678 NM_007237 11262 Hs.632549 NM_007237 ENSG00000079263 SP140 LYSP100|LYSP100-A|LYSP100-B SP140 nuclear body protein protein-coding 336-570 chr8 139106806 139107039 + 2 NA Intergenic Intergenic -192881 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 341-395 chr4 120628082 120628327 + 2 NA Intergenic L1MA9|LINE|L1 294662 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 641-104 chr7 132680154 132680773 + 2 NA intron (NR_046323, intron 3 of 4) intron (NR_046323, intron 3 of 4) 31669 NR_046323 286023 Hs.671875 NM_173682 ENSG00000183470 FLJ40288 - uncharacterized FLJ40288 ncRNA 223-201 chr22 47604564 47604750 + 2 NA Intergenic Intergenic 26912 NR_033377 400932 Hs.561058 NM_001001693 ENSG00000205634 LINC00898 - long intergenic non-protein coding RNA 898 ncRNA 185-36 chr11 81019890 81020015 + 2 NA Intergenic Intergenic -257149 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 375-402 chr8 53094448 53094652 + 2 NA Intergenic L1MB2|LINE|L1 154642 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 223-353 chr8 121792680 121792820 + 2 NA Intergenic Intergenic -151310 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 564-96 chr2 47494611 47495059 + 2 NA Intergenic Intergenic -32702 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 587-156 chr7 94771106 94771495 + 2 NA Intergenic L1MC3|LINE|L1 114930 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 322-346 chr3 122039308 122039566 + 2 NA Intergenic L1MCa|LINE|L1 -15925 NM_175862 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 177-100 chr3 3682165 3682284 + 2 NA Intergenic MIR3|SINE|MIR -117207 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 201-70 chr13 47204040 47204183 + 2 NA Intergenic L1M4|LINE|L1 -307035 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 403-39 chr10 128372120 128372419 + 2 NA Intergenic Intergenic 86319 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 398-178 chr2 166558395 166558699 + 2 NA Intergenic Intergenic -71576 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 250-34 chr10 16715577 16715808 + 2 NA intron (NM_152724, intron 6 of 7) L1MB3|LINE|L1 101732 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 350-503 chr8 26784955 26785268 + 2 NA intron (NM_001322504, intron 1 of 1) (TGAA)n|Simple_repeat|Simple_repeat 80544 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 200-265 chr8 36953123 36953268 + 2 NA Intergenic L1MEg|LINE|L1 168821 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 222-361 chr8 36461782 36461951 + 2 NA Intergenic L1M4b|LINE|L1 -322508 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 255-271 chr3 139402762 139402923 + 2 NA intron (NR_121609, intron 1 of 4) L1PB2|LINE|L1 13039 NR_121608 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 229-387 chr8 83187256 83187435 + 2 NA Intergenic LTR27E|LTR|ERV1 -216413 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 431-252 chr6 102424557 102424867 + 2 NA Intergenic L1M5|LINE|L1 1025727 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 308-14 chr1 78164030 78164321 + 2 NA Intergenic MIRb|SINE|MIR -65424 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 516-130 chr2 114239614 114239960 + 2 NA Intergenic Intergenic -202854 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 264-367 chr6 120097001 120097198 + 2 NA Intergenic L1MEg|LINE|L1 81920 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 416-136 chr16 79399409 79399691 + 2 NA Intergenic Intergenic 201187 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 627-50 chr19 57399381 57399913 + 2 NA exon (NM_152909, exon 3 of 3) exon (NM_152909, exon 3 of 3) 9793 NM_001172773 147694 Hs.126905 NM_152909 ENSG00000188785 ZNF548 - zinc finger protein 548 protein-coding 480-204 chr4 4960355 4960704 + 2 NA intron (NR_125893, intron 2 of 2) AluJb|SINE|Alu 39721 NR_125893 101928306 Hs.543743 NR_125893 LOC101928306 - uncharacterized LOC101928306 ncRNA 384-192 chr2 217429618 217429825 + 2 NA intron (NR_026597, intron 5 of 12) intron (NR_026597, intron 5 of 12) 146988 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 330-487 chr7 34493484 34493745 + 2 NA intron (NR_033665, intron 2 of 3) L2b|LINE|L2 -164604 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 214-197 chr22 29410472 29410618 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -21962 NM_145730 162 Hs.368794 NM_001127 ENSG00000100280 AP1B1 ADTB1|AP105A|BAM22|CLAPB2 adaptor related protein complex 1 subunit beta 1 protein-coding 349-128 chr12 43341938 43342222 + 2 NA Intergenic MER41B|LTR|ERV1 186765 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 292-117 chr12 124230955 124231238 + 2 NA intron (NM_001347902, intron 3 of 4) L1MC4a|LINE|L1 -58068 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 519-41 chr12 2431638 2432011 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 162048 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 156-24 chr12 15417596 15417723 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) 95151 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 267-361 chr5 169733782 169734030 + 2 NA intron (NR_156756, intron 22 of 52) L1MEd|LINE|L1 96631 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 509-204 chr5 110227361 110227725 + 2 NA Intergenic L1MA4A|LINE|L1 286372 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 636-36 chr13 42742238 42742580 + 2 NA Intergenic Intergenic -39141 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 250-215 chr2 104810176 104810332 + 2 NA intron (NR_037883, intron 3 of 3) intron (NR_037883, intron 3 of 3) 41222 NR_131235 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 415-179 chr3 78425437 78425834 + 2 NA Intergenic Intergenic -376672 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 354-432 chr7 52988755 52989093 + 2 NA Intergenic L1MCa|LINE|L1 -46709 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 410-179 chr22 47878011 47878250 + 2 NA Intergenic Intergenic 246456 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 291-139 chr14 84118656 84118831 + 2 NA Intergenic Intergenic -1153189 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 221-43 chr10 106081256 106081443 + 2 NA Intergenic Intergenic -58816 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 196-235 chr7 46074704 46074887 + 2 NA Intergenic Intergenic -153523 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 309-466 chr5 174828803 174829068 + 2 NA Intergenic L1ME3G|LINE|L1 77201 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 194-30 chr11 83585424 83585566 + 2 NA intron (NM_001142699, intron 19 of 27) intron (NM_001142699, intron 19 of 27) 96930 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 699-53 chr2 140795700 140796336 + 2 NA intron (NM_018557, intron 32 of 90) intron (NM_018557, intron 32 of 90) -209333 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 453-226 chr6 62809211 62809556 + 2 NA Intergenic L1PA2|LINE|L1 510594 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 315-411 chr6 26624240 26624424 + 2 NA Intergenic L1MC2|LINE|L1 27379 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 159-16 chr10 108826314 108826413 + 2 NA Intergenic L1MB8|LINE|L1 -757070 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 292-172 chr17 63015671 63015859 + 2 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 49530 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 313-194 chr16 86967150 86967370 + 2 NA Intergenic Intergenic -90524 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 494-59 chr13 87250370 87250850 + 2 NA Intergenic Intergenic 338690 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 360-281 chr21 35158824 35159063 + 2 NA Intergenic L3|LINE|CR1 -109645 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 292-27 chr1 172841488 172841743 + 2 NA Intergenic L2a|LINE|L2 182512 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 820-16 chr14 28349963 28350502 + 2 NA Intergenic Intergenic 415087 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 326-467 chr6 131426850 131427159 + 2 NA Intergenic Intergenic -146222 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 195-95 chr19 9302275 9302411 + 2 NA intron (NM_198535, intron 3 of 5) intron (NM_198535, intron 3 of 5) 7495 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 472-129 chr18 3304649 3304900 + 2 NA Intergenic AluSq|SINE|Alu 42055 NM_001144945 103910 Hs.190086 NM_033546 ENSG00000118680 MYL12B MLC-B|MRLC2 myosin light chain 12B protein-coding 386-382 chr9 103764244 103764611 + 2 NA Intergenic Intergenic -235282 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 236-268 chr4 160441260 160441442 + 2 NA Intergenic Intergenic -663567 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 274-256 chr3 34475522 34475679 + 2 NA Intergenic L1MA7|LINE|L1 676970 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 462-226 chr5 72785840 72786159 + 2 NA Intergenic Intergenic -30592 NM_002270 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 216-359 chrX 144355232 144355376 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 471233 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 660-47 chr2 182429351 182429928 + 2 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) -2591 NM_001258313 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 409-187 chr22 27029820 27030080 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 30568 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 437-198 chr4 138363475 138363895 + 2 NA intron (NR_051987, intron 2 of 2) HAL1|LINE|L1 53974 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 271-227 chr2 240076882 240077087 + 2 NA Intergenic Intergenic -30912 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 483-158 chr3 16478071 16478515 + 2 NA intron (NM_015150, intron 2 of 9) LTR67B|LTR|ERVL 35406 NM_015150 23180 Hs.98910 NM_015150 ENSG00000131378 RFTN1 MIG2|PIB10|PIG9|RAFTLIN raftlin, lipid raft linker 1 protein-coding 520-303 chr8 113587424 113587829 + 2 NA Intergenic Intergenic -150687 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 304-59 chr10 84088580 84088838 + 2 NA Intergenic Intergenic -50800 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 233-405 chrX 83297659 83297870 + 2 NA Intergenic L1PREC2|LINE|L1 -210526 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 208-277 chr8 136251035 136251217 + 2 NA Intergenic L1MB7|LINE|L1 -279672 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 234-258 chr3 176079274 176079414 + 2 NA Intergenic Intergenic -165207 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 203-74 chr15 56974549 56974673 + 2 NA intron (NM_207038, intron 3 of 19) MIRb|SINE|MIR 55166 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 178-69 chr2 118599659 118599794 + 2 NA TTS (NR_110272) TTS (NR_110272) 3240 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 431-240 chr6 19150665 19151024 + 2 NA intron (NR_110860, intron 4 of 10) intron (NR_110860, intron 4 of 10) 29636 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 492-17 chr10 9750348 9750804 + 2 NA Intergenic L1ME2z|LINE|L1 -308146 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 653-127 chr8 135203900 135204359 + 2 NA Intergenic L1PA16|LINE|L1 -30002 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 217-254 chr4 57810332 57810497 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 384542 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 552-11 chr1 217222649 217223179 + 2 NA Intergenic Intergenic -85212 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 235-37 chr10 49376615 49376770 + 2 NA intron (NM_001276451, intron 6 of 6) intron (NM_001276451, intron 6 of 6) 19397 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 430-244 chr5 59610060 59610362 + 2 NA intron (NM_001165899, intron 3 of 16) LTR88b|LTR|Gypsy? -22586 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 725-57 chr8 79539084 79539648 + 2 NA Intergenic L1PB4|LINE|L1 -71751 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 169-47 chr17 65511185 65511315 + 2 NA Intergenic L1ME2|LINE|L1 50398 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 313-526 chr8 84486640 84486873 + 2 NA intron (NM_001354308, intron 2 of 9) MER97d|DNA|hAT-Tip100 71272 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 322-362 chr4 14837783 14838090 + 2 NA intron (NR_126435, intron 2 of 6) MIR|SINE|MIR 50233 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 455-259 chr7 64522431 64522795 + 2 NA intron (NM_178558, intron 3 of 3) L1MB2|LINE|L1 40458 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 229-337 chr6 93672967 93673129 + 2 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -30969 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 217-332 chr6 133415788 133415967 + 2 NA intron (NM_172103, intron 3 of 18) L2c|LINE|L2 174378 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 288-382 chr6 139256024 139256231 + 2 NA intron (NM_153235, intron 6 of 9) intron (NM_153235, intron 6 of 9) 35871 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 247-205 chr2 104236827 104237013 + 2 NA Intergenic Intergenic 171412 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 320-204 chr17 30967333 30967610 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -3568 NM_197939 84282 Hs.29874 NM_032322 ENSG00000181481 RNF135 L13|MMFD|REUL|Riplet ring finger protein 135 protein-coding 280-368 chr7 7069321 7069479 + 2 NA Intergenic SATR1|Satellite|Satellite -2355 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 707-106 chr8 117869261 117869831 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 51367 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 255-42 chr10 117510721 117510870 + 2 NA intron (NR_002791, intron 2 of 3) Charlie19a|DNA|hAT-Charlie -31650 NM_001165924 2018 Hs.202095 NM_004098 ENSG00000170370 EMX2 - empty spiracles homeobox 2 protein-coding 758-78 chr8 131568278 131568738 + 2 NA Intergenic Intergenic -335585 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 659-119 chr8 114493976 114494351 + 2 NA Intergenic Intergenic -1057224 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 190-199 chr9 103079112 103079224 + 2 NA Intergenic MIR|SINE|MIR 83835 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 232-335 chr6 137964770 137964911 + 2 NA Intergenic Intergenic -19040 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 253-382 chr7 37586311 37586525 + 2 NA Intergenic L1MB7|LINE|L1 -97348 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 571-68 chr19 32303464 32303886 + 2 NA Intergenic L1MA7|LINE|L1 -41935 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 222-208 chr20 55072198 55072405 + 2 NA Intergenic Intergenic -350742 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 250-162 chr17 61595677 61595887 + 2 NA Intergenic Intergenic -4563 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 210-138 chr2 134220692 134220847 + 2 NA intron (NM_001371457, intron 1 of 16) intron (NM_001371457, intron 1 of 16) -33303 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 262-340 chr5 38429816 38429996 + 2 NA intron (NM_182798, intron 9 of 16) intron (NM_182798, intron 9 of 16) -15640 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 422-188 chr3 81985496 81985875 + 2 NA promoter-TSS (NR_147146) promoter-TSS (NR_147146) -457 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 332-311 chr22 33973734 33973900 + 2 NA Intergenic L1MA6|LINE|L1 -50929 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 351-144 chr15 57272851 57273132 + 2 NA intron (NM_001322152, intron 18 of 20) intron (NM_001322152, intron 18 of 20) 5666 NR_145748 109616990 NR_145748 ENSG00000239035 SNORD13D - small nucleolar RNA, C/D box 13D snoRNA 242-295 chr5 36853954 36854102 + 2 NA Intergenic L1ME4a|LINE|L1 22666 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 230-10 chr1 76749829 76750016 + 2 NA Intergenic Intergenic 29345 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 272-428 chr7 86844438 86844588 + 2 NA intron (NM_000840, intron 4 of 5) L2a|LINE|L2 121386 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 726-28 chr14 47813184 47813647 + 2 NA Intergenic L1PB1|LINE|L1 -18401 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 266-83 chr12 17482242 17482430 + 2 NA Intergenic L1MA5|LINE|L1 106742 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 355-131 chr12 59788469 59788688 + 2 NA non-coding (NR_073056, exon 7 of 7) non-coding (NR_073056, exon 7 of 7) 99208 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 397-80 chr14 38612598 38612933 + 2 NA Intergenic L1MEc|LINE|L1 -269831 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 268-152 chr17 63294453 63294623 + 2 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 145729 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 326-535 chr8 89106540 89106746 + 2 NA Intergenic Intergenic 651068 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 160-38 chr2 56005301 56005419 + 2 NA intron (NR_126406, intron 2 of 2) L1MC1|LINE|L1 -4565 NR_030623 100126319 NR_030623 ENSG00000211520 MIR216B MIRN216B|mir-216b microRNA 216b ncRNA 608-161 chr8 130998860 130999461 + 2 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 41749 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 377-111 chr14 19915308 19915632 + 2 NA Intergenic Intergenic -5137 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 306-360 chr4 79287087 79287350 + 2 NA intron (NR_038342, intron 4 of 5) intron (NR_038342, intron 4 of 5) 38843 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 339-298 chr2 208715190 208715472 + 2 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 172689 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 228-295 chr6 75634935 75635113 + 2 NA intron (NM_001100409, intron 5 of 22) intron (NM_001100409, intron 5 of 22) 33144 NM_015571 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 354-322 chr4 46928797 46929138 + 2 NA intron (NM_001204267, intron 7 of 7) intron (NM_001204267, intron 7 of 7) -19722 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 263-80 chr12 18008883 18009068 + 2 NA Intergenic MIRb|SINE|MIR 81218 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 225-100 chr15 25472718 25472872 + 2 NA Intergenic Intergenic -33739 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 577-61 chr14 95746860 95747293 + 2 NA intron (NR_148060, intron 2 of 2) intron (NR_148060, intron 2 of 2) 31593 NR_148060 107984703 Hs.633538 NR_148060 LOC107984703 - uncharacterized LOC107984703 ncRNA 201-208 chr5 137417676 137417795 + 2 NA intron (NM_004598, intron 2 of 10) L1ME1|LINE|L1 81591 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 380-187 chr2 103277838 103278105 + 2 NA Intergenic L1ME1|LINE|L1 -293542 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 294-374 chr5 56394093 56394263 + 2 NA Intergenic L1PA14|LINE|L1 87591 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 270-168 chr19 9463351 9463561 + 2 NA Intergenic HERVL40-int|LTR|ERVL -27878 NM_006631 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 352-415 chr5 45430891 45431178 + 2 NA intron (NM_021072, intron 3 of 7) L1PA15|LINE|L1 265346 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 327-70 chr11 3995844 3996148 + 2 NA intron (NM_001277962, intron 2 of 12) L1M4b|LINE|L1 -98689 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 932-14 chr3 118451743 118452498 + 2 NA Intergenic L1PA11|LINE|L1 -189648 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 612-15 chr10 53154455 53154792 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -382923 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 455-257 chr7 54661594 54661911 + 2 NA Intergenic Intergenic 97459 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 221-140 chr2 82334363 82334511 + 2 NA Intergenic LTR1D|LTR|ERV1 -522366 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 329-422 chr4 120373992 120374235 + 2 NA Intergenic Intergenic -307265 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 332-508 chr7 157927983 157928285 + 2 NA intron (NM_130843, intron 10 of 21) MIR|SINE|MIR 73549 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 417-224 chr5 98078615 98078967 + 2 NA Intergenic Intergenic 82448 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 297-271 chr21 7917072 7917228 + 2 NA Intergenic (ATTCCATTCC)n|Simple_repeat|Simple_repeat -87518 NM_001369869 102723475 NM_001330065 ENSG00000276289 KCNE1B - potassium voltage-gated channel subfamily E regulatory subunit 1B protein-coding 401-313 chr8 58965289 58965640 + 2 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 153683 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 274-328 chr5 165813349 165813616 + 2 NA Intergenic Intergenic 1112888 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 358-44 chr10 51166671 51166918 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 92307 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 411-81 chr13 96285533 96285834 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) -141546 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 230-406 chrX 137667100 137667278 + 2 NA Intergenic MIR3|SINE|MIR 101062 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 184-59 chr14 80733538 80733679 + 2 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 208130 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 400-115 chr16 5955390 5955649 + 2 NA Intergenic Intergenic -63505 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 593-96 chr3 1774710 1775201 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -323848 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 429-151 chr2 68025242 68025582 + 2 NA Intergenic L1M1|LINE|L1 37592 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 221-239 chr5 58383216 58383364 + 2 NA Intergenic MIRc|SINE|MIR 76796 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 515-262 chr8 51721382 51721848 + 2 NA intron (NM_144651, intron 1 of 22) L1PA4|LINE|L1 87830 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 285-115 chr14 46619676 46619888 + 2 NA Intergenic L1M2|LINE|L1 31999 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 354-2 chr1 17922106 17922317 + 2 NA Intergenic L2a|LINE|L2 -143446 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 294-255 chr2 233919715 233919949 + 2 NA intron (NM_024080, intron 1 of 25) intron (NM_024080, intron 1 of 25) 2459 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 580-152 chr5 56565876 56566344 + 2 NA intron (NR_161255, intron 1 of 5) L2a|LINE|L2 40146 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 292-140 chr14 63059797 63059999 + 2 NA Intergenic L1PREC2|LINE|L1 -14440 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 524-81 chr16 62923937 62924303 + 2 NA Intergenic Intergenic -887682 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 355-210 chr18 5350627 5350878 + 2 NA Intergenic L1ME3A|LINE|L1 -53699 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 565-74 chr2 48934309 48934706 + 2 NA Intergenic LTR88c|LTR|Gypsy? -125096 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 274-173 chr18 13787329 13787562 + 2 NA Intergenic MIR|SINE|MIR -36704 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 308-127 chr13 41147677 41147892 + 2 NA intron (NR_120423, intron 2 of 3) LTR26C|LTR|ERV1 14856 NR_120423 101929140 Hs.663088 NR_120423 ENSG00000278390 LOC101929140 - uncharacterized LOC101929140 ncRNA 378-170 chr17 52913667 52913896 + 2 NA Intergenic Intergenic 51660 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 187-151 chr6 97386195 97386326 + 2 NA intron (NR_110757, intron 1 of 4) intron (NR_110757, intron 1 of 4) 80674 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 416-86 chr12 14215284 14215571 + 2 NA Intergenic Intergenic -150205 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 371-76 chr12 10259094 10259455 + 2 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) 20313 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 249-130 chr15 73830571 73830762 + 2 NA Intergenic LTR16A1|LTR|ERVL -42898 NM_153356 161514 Hs.124512 NM_153356 ENSG00000167139 TBC1D21 MgcRabGAP TBC1 domain family member 21 protein-coding 331-268 chr2 77143062 77143252 + 2 NA intron (NR_146416, intron 1 of 1) MIRb|SINE|MIR 157192 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 387-377 chr8 135940506 135940848 + 2 NA Intergenic Intergenic 483221 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 197-68 chr16 7248463 7248630 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -84299 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 264-424 chr8 106882561 106882770 + 2 NA Intergenic Intergenic -112421 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 377-391 chr8 52036176 52036489 + 2 NA Intergenic Intergenic -137146 NM_001286782 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 521-4 chr1 41043695 41044140 + 2 NA TTS (NR_037868) TTS (NR_037868) -22162 NM_001168247 200172 Hs.194609 NM_144990 ENSG00000171790 SLFNL1 - schlafen like 1 protein-coding 337-581 chr9 77256979 77257163 + 2 NA intron (NM_001018038, intron 22 of 68) L1MB3|LINE|L1 -79154 NR_026668 100286938 Hs.662256 NR_026668 ENSG00000232998 VPS13A-AS1 - VPS13A antisense RNA 1 ncRNA 263-285 chr4 47981080 47981341 + 2 NA intron (NM_001142564, intron 1 of 9) intron (NM_001142564, intron 1 of 9) 323 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 344-277 chr20 33148889 33149100 + 2 NA Intergenic (GATG)n|Simple_repeat|Simple_repeat -12776 NM_001319164 140683 Hs.125960 NM_080574 ENSG00000131050 BPIFA2 C20orf70|PSP|SPLUNC2|bA49G10.1 BPI fold containing family A member 2 protein-coding 620-114 chr5 147611874 147612275 + 2 NA intron (NM_001282282, intron 19 of 20) A-rich|Low_complexity|Low_complexity 52080 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 242-119 chr15 77373131 77373340 + 2 NA intron (NM_024776, intron 1 of 7) L2b|LINE|L2 46869 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 578-196 chrX 73878374 73878781 + 2 NA Intergenic Intergenic -25824 NR_001564 7503 Hs.529901 NR_001564 ENSG00000229807 XIST DXS1089|DXS399E|LINC00001|NCRNA00001|SXI1|swd66 X inactive specific transcript ncRNA 449-191 chr4 81259728 81259979 + 2 NA Intergenic Intergenic -44631 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 309-560 chr8 126815761 126815963 + 2 NA Intergenic L1MC5|LINE|L1 -197292 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 263-229 chr20 38350467 38350694 + 2 NA intron (NM_004139, intron 2 of 14) MIRb|SINE|MIR 4098 NM_004139 3929 Hs.154078 NM_004139 ENSG00000129988 LBP BPIFD2 lipopolysaccharide binding protein protein-coding 360-393 chr6 6920031 6920332 + 2 NA Intergenic Intergenic -187562 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 169-91 chr4 187546984 187547118 + 2 NA intron (NR_110436, intron 2 of 2) intron (NR_110436, intron 2 of 2) -41438 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 299-120 chr13 47230271 47230508 + 2 NA Intergenic L1MEc|LINE|L1 -333313 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 470-109 chr19 29040437 29040802 + 2 NA Intergenic Intergenic 38064 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 220-130 chr17 51571063 51571241 + 2 NA Intergenic Intergenic 135725 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 275-363 chr8 103660887 103661040 + 2 NA intron (NM_001348488, intron 3 of 25) L1ME3A|LINE|L1 -158257 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 493-286 chr7 114437743 114438096 + 2 NA intron (NR_033767, intron 2 of 17) MER33|DNA|hAT-Charlie 11417 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 323-85 chr11 59952998 59953203 + 2 NA intron (NR_130719, intron 3 of 8) intron (NR_130719, intron 3 of 8) 10221 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 450-72 chr13 55964699 55965055 + 2 NA Intergenic L1PREC2|LINE|L1 790423 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 407-193 chr3 68267866 68268250 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -232579 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 229-242 chr22 27008323 27008497 + 2 NA Intergenic MIR|SINE|MIR 52108 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 551-74 chr18 67138711 67139096 + 2 NA Intergenic Intergenic 57319 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 199-121 chr2 124864962 124865138 + 2 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 839763 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 248-377 chr7 48671563 48671807 + 2 NA Intergenic L3|LINE|CR1 -252862 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 280-327 chr5 99922391 99922641 + 2 NA Intergenic Intergenic 388526 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 346-378 chr5 12903524 12903800 + 2 NA intron (NR_147005, intron 3 of 4) L1M5|LINE|L1 129224 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 529-184 chr5 124392842 124393204 + 2 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 45497 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 136-88 chr8 100286853 100286938 + 2 NA intron (NM_001353837, intron 2 of 9) intron (NM_001353837, intron 2 of 9) 15298 NM_001353837 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 189-224 chr9 24887216 24887370 + 2 NA Intergenic Intergenic -341396 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 218-95 chr14 62609050 62609206 + 2 NA Intergenic L1ME1|LINE|L1 436330 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 288-163 chr18 75525308 75525512 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -97707 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 846-37 chr4 110028719 110029334 + 2 NA Intergenic Intergenic 116143 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 275-71 chr11 103968842 103969082 + 2 NA intron (NM_025208, intron 3 of 6) L2c|LINE|L2 -67678 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 456-308 chr8 34750533 34750852 + 2 NA Intergenic Intergenic -33229 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 372-236 chr2 80011338 80011696 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -144934 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 168-116 chr8 104555327 104555453 + 2 NA intron (NM_013437, intron 1 of 6) L1PB1|LINE|L1 33634 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 299-219 chr2 122723962 122724111 + 2 NA Intergenic Intergenic 349445 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 242-15 chr1 118607409 118607591 + 2 NA Intergenic L1MA10|LINE|L1 380843 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 311-562 chrX 95570113 95570301 + 2 NA Intergenic L1MC1|LINE|L1 -506981 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 301-373 chr5 125880112 125880294 + 2 NA Intergenic LTR81A|LTR|Gypsy -299374 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 435-222 chr6 153270665 153270899 + 2 NA Intergenic L1MCa|LINE|L1 -139500 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 355-546 chrX 99832246 99832574 + 2 NA Intergenic L1PA13|LINE|L1 577863 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 293-391 chr7 17116668 17116842 + 2 NA Intergenic L1PA8A|LINE|L1 -181897 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 234-92 chr14 43704605 43704767 + 2 NA Intergenic Intergenic 802597 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 419-199 chr3 192494421 192494799 + 2 NA intron (NM_004113, intron 2 of 5) L3|LINE|CR1 -20412 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 508-132 chr20 37521899 37522327 + 2 NA intron (NM_001167820, intron 1 of 2) intron (NM_001167820, intron 1 of 2) 863 NM_181689 4826 Hs.504703 NM_005386 ENSG00000053438 NNAT Peg5 neuronatin protein-coding 430-28 chr10 45151502 45151806 + 2 NA intron (NR_024472, intron 2 of 8) intron (NR_024472, intron 2 of 8) 2942 NR_024472 100133308 Hs.434365 NR_024472 RSU1P2 - Ras suppressor protein 1 pseudogene 2 pseudo 409-206 chr3 165550714 165551022 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 286555 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 396-196 chr20 47380897 47381146 + 2 NA Intergenic AluSx3|SINE|Alu -24132 NM_001281769 23613 Hs.446240 NM_012408 ENSG00000101040 ZMYND8 PRKCBP1|PRO2893|RACK7 zinc finger MYND-type containing 8 protein-coding 196-147 chr2 234760561 234760702 + 2 NA Intergenic L1M7|LINE|L1 77963 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 523-246 chr6 101726551 101727039 + 2 NA intron (NM_001166247, intron 6 of 16) intron (NM_001166247, intron 6 of 16) 327810 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 479-119 chr2 223451355 223451772 + 2 NA Intergenic AluSg|SINE|Alu 150798 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 330-168 chr15 24746072 24746355 + 2 NA Intergenic Intergenic 70819 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 487-175 chr22 47920115 47920441 + 2 NA Intergenic Intergenic 288604 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 132-51 chr3 54525343 54525430 + 2 NA intron (NM_018398, intron 5 of 37) L1MB8|LINE|L1 114471 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 402-87 chr14 75730181 75730507 + 2 NA intron (NM_015072, intron 12 of 31) intron (NM_015072, intron 12 of 31) 69098 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 354-405 chr6 103624742 103624931 + 2 NA Intergenic Intergenic 1234710 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 413-109 chr16 79140766 79141166 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 459771 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 343-35 chr1 227611754 227611929 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 48285 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 302-118 chr13 78166666 78166873 + 2 NA intron (NR_047001, intron 1 of 5) L1MA9|LINE|L1 111914 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 147-34 chr17 78738615 78738691 + 2 NA intron (NM_004762, intron 1 of 12) intron (NM_004762, intron 1 of 12) -1751 NM_001365040 9267 Hs.191215 NM_004762 ENSG00000108669 CYTH1 B2-1|CYTOHESIN-1|D17S811E|PSCD1|SEC7 cytohesin 1 protein-coding 594-152 chr8 121462270 121462696 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -176863 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 290-199 chr2 18025591 18025840 + 2 NA Intergenic L1M5|LINE|L1 147048 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 455-2 chr1 21900939 21901331 + 2 NA intron (NM_005529, intron 1 of 96) MER46C|DNA|TcMar-Tigger 36175 NM_001291860 3339 Hs.562227 NM_005529 ENSG00000142798 HSPG2 HSPG|PLC|PRCAN|SJA|SJS|SJS1 heparan sulfate proteoglycan 2 protein-coding 399-303 chr8 46808126 46808347 + 2 NA Intergenic MER61-int|LTR|ERV1 -32650 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 430-271 chr6 135601252 135601533 + 2 NA intron (NR_152845, intron 2 of 4) L1ME4a|LINE|L1 103591 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 635-34 chr15 58268466 58268941 + 2 NA Intergenic Intergenic 130322 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 279-217 chr20 19248309 19248533 + 2 NA intron (NR_024564, intron 6 of 7) Tigger6a|DNA|TcMar-Tigger 35779 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 368-480 chr9 36692211 36692525 + 2 NA Intergenic L1MC2|LINE|L1 119473 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 581-54 chr17 21874546 21875052 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 182276 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 534-183 chr4 135017963 135018415 + 2 NA Intergenic L2a|LINE|L2 105370 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 670-130 chr8 131730312 131730798 + 2 NA Intergenic L1MCa|LINE|L1 -173538 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 198-10 chr1 119384372 119384529 + 2 NA intron (NM_001005783, intron 4 of 8) intron (NM_001005783, intron 4 of 8) 15504 NR_046780 100874270 NR_046780 ENSG00000230921 HAO2-IT1 - HAO2 intronic transcript 1 ncRNA 229-83 chr12 4086060 4086230 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -187617 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 452-294 chr9 104031822 104032181 + 2 NA Intergenic Intergenic 32292 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 344-402 chr5 153447245 153447535 + 2 NA Intergenic Intergenic -43134 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 347-371 chr5 10438835 10439039 + 2 NA 3' UTR (NM_001270661, exon 23 of 23) 3' UTR (NM_001270661, exon 23 of 23) 2914 NR_102746 100505845 Hs.599395 NR_102746 ROPN1L-AS1 - ROPN1L antisense RNA 1 ncRNA 272-133 chr15 62654148 62654341 + 2 NA intron (NM_015059, intron 4 of 55) L1MC5|LINE|L1 6933 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 289-275 chr21 18033821 18034043 + 2 NA intron (NM_001204178, intron 2 of 5) L1M6|LINE|L1 116592 NM_001204177 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 348-277 chr22 33069621 33069807 + 2 NA Intergenic L2a|LINE|L2 -11333 NM_001135774 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 548-2 chr1 60743682 60744034 + 2 NA intron (NR_110628, intron 1 of 5) HAL1b|LINE|L1 81726 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 584-81 chr2 134836947 134837286 + 2 NA Intergenic MIR|SINE|MIR -1500 NM_138326 130013 Hs.655728 NM_138326 ENSG00000153086 ACMSD - aminocarboxymuconate semialdehyde decarboxylase protein-coding 355-147 chr13 90899116 90899409 + 2 NA intron (NR_027039, intron 4 of 5) intron (NR_027039, intron 4 of 5) 27335 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 393-23 chr1 188531442 188531812 + 2 NA Intergenic AluSx1|SINE|Alu 1087999 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 339-103 chr11 76881648 76881849 + 2 NA intron (NM_001300953, intron 1 of 9) L1ME2z|LINE|L1 20830 NM_001300953 55331 Hs.23862 NM_018367 ENSG00000078124 ACER3 APHC|PHCA|PLDECO alkaline ceramidase 3 protein-coding 389-240 chr3 115553176 115553408 + 2 NA Intergenic L2a|LINE|L2 -70218 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 263-368 chr6 133220108 133220349 + 2 NA Intergenic Intergenic -21129 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 559-155 chr6 36748116 36748647 + 2 NA intron (NM_001314020, intron 2 of 8) MIRc|SINE|MIR 9019 NM_001314020 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 275-149 chr17 75181299 75181497 + 2 NA intron (NM_001005849, intron 1 of 2) intron (NM_001005849, intron 1 of 2) 1561 NM_006937 6613 Hs.380973 NM_006937 ENSG00000188612 SUMO2 HSMT3|SMT3B|SMT3H2|SUMO3|Smt3A small ubiquitin like modifier 2 protein-coding 270-329 chr6 40213762 40213936 + 2 NA Intergenic Intergenic 142157 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 260-191 chr19 32656358 32656542 + 2 NA intron (NM_032139, intron 2 of 28) L2a|LINE|L2 18730 NM_032139 84079 Hs.59236 NM_032139 ENSG00000105186 ANKRD27 PP12899|VARP ankyrin repeat domain 27 protein-coding 307-162 chr15 70837584 70837871 + 2 NA intron (NM_018357, intron 1 of 2) SVA_D|Retroposon|SVA -15512 NM_001284357 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 521-247 chr8 15037855 15038304 + 2 NA intron (NM_139167, intron 1 of 7) L1MA8|LINE|L1 -184569 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 138-2 chr1 60319250 60319373 + 2 NA Intergenic MIRb|SINE|MIR -245541 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 357-340 chr5 40395789 40396131 + 2 NA Intergenic MER20|DNA|hAT-Charlie -283955 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 206-26 chr10 16337550 16337708 + 2 NA Intergenic L1MA9|LINE|L1 -99314 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 249-384 chr7 54700493 54700717 + 2 NA Intergenic L1ME3|LINE|L1 58606 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 233-360 chr7 110741286 110741458 + 2 NA intron (NM_001350963, intron 5 of 5) MLT1A1|LTR|ERVL-MaLR -349634 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 540-188 chr6 161904731 161905189 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 433983 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 345-545 chr8 139056297 139056605 + 2 NA Intergenic LTR16C|LTR|ERVL -142410 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 207-237 chr5 26869007 26869143 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 169511 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 520-73 chr13 58473545 58473943 + 2 NA Intergenic Intergenic -240627 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 357-140 chr16 3060990 3061309 + 2 NA TTS (NM_022468) TTS (NM_022468) -1779 NR_123723 100507419 Hs.312579 NR_123723 MMP25-AS1 - MMP25 antisense RNA 1 ncRNA 320-522 chr7 117751604 117751867 + 2 NA intron (NM_001363351, intron 12 of 22) intron (NM_001363351, intron 12 of 22) 120485 NM_001363350 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 585-97 chr3 22415440 22415844 + 2 NA Intergenic MIRc|SINE|MIR 458503 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 517-77 chr14 46406929 46407283 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -64253 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 354-367 chr5 28625102 28625418 + 2 NA Intergenic Intergenic -301610 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 297-331 chr4 65772282 65772444 + 2 NA Intergenic L1PA13|LINE|L1 -101868 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 554-41 chr11 13037593 13038118 + 2 NA Intergenic Intergenic 28539 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 481-138 chr2 47684793 47685145 + 2 NA Intergenic Intergenic -98113 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 200-61 chr12 129362473 129362611 + 2 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 153941 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 448-176 chr4 40408433 40408838 + 2 NA Intergenic L1MB5|LINE|L1 73302 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 331-156 chr14 59285563 59285859 + 2 NA intron (NM_001270520, intron 2 of 24) L1PA16|LINE|L1 22270 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 801-16 chr16 5722729 5723295 + 2 NA Intergenic L2b|LINE|L2 90545 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 197-219 chr8 132805453 132805603 + 2 NA intron (NM_198513, intron 7 of 7) intron (NM_198513, intron 7 of 7) 30140 NM_016018 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 489-74 chr14 52141965 52142276 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -73061 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 295-391 chr5 162270667 162270900 + 2 NA Intergenic MIR|SINE|MIR 203141 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 321-320 chr2 224107238 224107523 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -68061 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 321-363 chr3 18511482 18511699 + 2 NA intron (NR_125803, intron 4 of 6) intron (NR_125803, intron 4 of 6) -65998 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 117-23 chr20 41937252 41937334 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -318916 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 691-59 chr4 160813480 160814096 + 2 NA Intergenic L1MEf|LINE|L1 -1036004 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 287-4 chr1 28909631 28909891 + 2 NA intron (NM_001166007, intron 1 of 17) AluJo|SINE|Alu -4815 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 520-62 chr12 2148372 2148745 + 2 NA intron (NM_199460, intron 3 of 49).2 AluJo|SINE|Alu 74923 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 254-201 chr2 166462407 166462573 + 2 NA exon (NM_002976, exon 9 of 25) exon (NM_002976, exon 9 of 25) 24481 NM_002976 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 634-89 chr20 55491107 55491625 + 2 NA Intergenic L1MA10|LINE|L1 -64169 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 500-253 chr6 94119349 94119733 + 2 NA Intergenic L1MEf|LINE|L1 401238 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 449-240 chr6 67623814 67624210 + 2 NA Intergenic Intergenic -431339 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 231-256 chr4 67547757 67547951 + 2 NA Intergenic L1ME1|LINE|L1 -2351 NR_155754 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 242-85 chr12 125658685 125658854 + 2 NA 3' UTR (NM_001286219, exon 5 of 5) 3' UTR (NM_001286219, exon 5 of 5) 36317 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 360-61 chr11 31981931 31982266 + 2 NA Intergenic L1ME3E|LINE|L1 59220 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 257-240 chr20 48227361 48227596 + 2 NA Intergenic AluSz|SINE|Alu -132433 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 381-383 chr8 89491490 89491740 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 266096 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 523-174 chr3 25100571 25100935 + 2 NA intron (NM_001290216, intron 3 of 10) intron (NM_001290216, intron 3 of 10) -240049 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 373-25 chr1 159615042 159615271 + 2 NA Intergenic Intergenic 27330 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 519-60 chr14 63093366 63093712 + 2 NA Intergenic MER21B|LTR|ERVL -48081 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 214-346 chr8 136834037 136834205 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 303323 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 455-134 chr2 183270637 183271019 + 2 NA Intergenic L1MA8|LINE|L1 146385 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 601-15 chr10 66841121 66841554 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -84699 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 329-294 chr2 157722977 157723241 + 2 NA Intergenic Intergenic -94245 NM_001111033 130399 Hs.562901 NM_145259 ENSG00000123612 ACVR1C ACVRLK7|ALK7 activin A receptor type 1C protein-coding 389-159 chr2 26894799 26895124 + 2 NA intron (NM_001253724, intron 1 of 12) L1MD|LINE|L1 46537 NM_001253724 56896 Hs.299315 NM_020134 ENSG00000157851 DPYSL5 CRAM|CRMP-5|CRMP5|Ulip6 dihydropyrimidinase like 5 protein-coding 348-439 chr5 179247967 179248218 + 2 NA intron (NM_014244, intron 3 of 21) L1MB7|LINE|L1 97369 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 303-2 chr1 52402005 52402227 + 2 NA intron (NM_001190818, intron 2 of 16) intron (NM_001190818, intron 2 of 16) 2307 NM_004153 4998 Hs.17908 NM_004153 ENSG00000085840 ORC1 HSORC1|ORC1L|PARC1 origin recognition complex subunit 1 protein-coding 237-373 chr8 75372611 75372794 + 2 NA Intergenic Intergenic -34947 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 346-266 chr2 178685174 178685371 + 2 NA exon (NM_001267550, exon 129 of 363) exon (NM_001267550, exon 129 of 363) -91654 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 771-33 chr17 49475364 49476095 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -13980 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LINC02075 - long intergenic non-protein coding RNA 2075 ncRNA 244-269 chr4 85594553 85594711 + 2 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) 119482 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 192-181 chr6 162951943 162952101 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 102139 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 321-569 chr8 117717947 117718231 + 2 NA Intergenic Intergenic 197376 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 136-51 chr20 19020571 19020639 + 2 NA Intergenic Intergenic -190402 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 223-125 chr18 5313508 5313662 + 2 NA Intergenic Intergenic -16532 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 888-35 chr6 39171383 39172011 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -56511 NM_018322 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 569-100 chr2 138157342 138157893 + 2 NA Intergenic Intergenic 55733 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 164-52 chr2 21855977 21856133 + 2 NA Intergenic Intergenic -145403 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 230-42 chr10 62337906 62338095 + 2 NA Intergenic Intergenic -36157 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 392-20 chr10 16178563 16178844 + 2 NA Intergenic L1MB4|LINE|L1 -258240 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 255-185 chr2 11538447 11538634 + 2 NA intron (NM_014668, intron 1 of 32) intron (NM_014668, intron 1 of 32) -1279 NM_148903 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 308-515 chr8 126719537 126719734 + 2 NA Intergenic Intergenic -161157 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 405-126 chr2 4526030 4526279 + 2 NA Intergenic L1ME1|LINE|L1 130068 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 182-154 chr6 121362031 121362175 + 2 NA Intergenic L3|LINE|CR1 -27374 NM_001367759 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 261-259 chr3 149460598 149460844 + 2 NA Intergenic MIRc|SINE|MIR -13976 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 434-34 chr10 48703084 48703397 + 2 NA intron (NM_020945, intron 1 of 61) intron (NM_020945, intron 1 of 61) 17777 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 651-28 chr11 114836299 114836804 + 2 NA Intergenic Intergenic 158024 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 360-384 chr5 146736735 146736970 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 141933 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 262-356 chr5 167703702 167703858 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -51149 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 251-262 chr4 28098852 28099066 + 2 NA Intergenic Intergenic -720623 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 203-95 chr18 56585659 56585839 + 2 NA Intergenic L1ME2|LINE|L1 52843 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 539-42 chr11 116369690 116370084 + 2 NA Intergenic Intergenic -269535 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 259-286 chr4 75058792 75059045 + 2 NA Intergenic MIR|SINE|MIR 25790 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 192-23 chr10 61263548 61263686 + 2 NA Intergenic Intergenic -189022 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 282-112 chr13 63300693 63300932 + 2 NA intron (NR_126409, intron 2 of 6) intron (NR_126409, intron 2 of 6) 27282 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 180-84 chr2 105495880 105495994 + 2 NA Intergenic Intergenic -57424 NM_201557 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 890-39 chr8 83139042 83139508 + 2 NA Intergenic Intergenic 227171 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 263-10 chr1 83067665 83067912 + 2 NA intron (NR_147074, intron 5 of 10) MSTA|LTR|ERVL-MaLR -81580 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 467-34 chr10 111660522 111660811 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 523099 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 223-67 chr12 45769393 45769555 + 2 NA intron (NM_152641, intron 3 of 20) L1M4b|LINE|L1 39765 NM_001347839 196528 Hs.317304 NM_152641 ENSG00000189079 ARID2 BAF200|CSS6|p200 AT-rich interaction domain 2 protein-coding 248-132 chr15 95273667 95273889 + 2 NA Intergenic Intergenic 53322 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 484-233 chr6 44913338 44913659 + 2 NA intron (NM_001350324, intron 10 of 11) intron (NM_001350324, intron 10 of 11) 284272 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 374-353 chr7 7408789 7409060 + 2 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 126949 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 363-407 chr7 23711888 23712123 + 2 NA intron (NM_001260504, intron 1 of 23) intron (NM_001260504, intron 1 of 23) 1786 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 193-212 chr9 25423795 25423940 + 2 NA Intergenic MIR|SINE|MIR 254991 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 262-147 chr15 86636358 86636510 + 2 NA intron (NM_152336, intron 22 of 24) GA-rich|Low_complexity|Low_complexity -296446 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 340-586 chrX 84340869 84341156 + 2 NA intron (NM_001177478, intron 6 of 9) intron (NM_001177478, intron 6 of 9) -115184 NR_031690 100302191 NR_031690 ENSG00000221494 MIR548I4 MIR548I-4|MIRN548I4|hsa-mir-548i-4 microRNA 548i-4 ncRNA 348-562 chr9 116773134 116773340 + 2 NA intron (NM_014010, intron 12 of 21) intron (NM_014010, intron 12 of 21) 85932 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 440-15 chr1 222229234 222229561 + 2 NA Intergenic Intergenic -250877 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 418-11 chr1 147301598 147301855 + 2 NA Intergenic L1MA8|LINE|L1 58584 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 137-45 chr2 82190657 82190765 + 2 NA Intergenic MIR|SINE|MIR -666092 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 338-305 chr20 64281614 64281911 + 2 NA Intergenic L1MB5|LINE|L1 -8623 NR_040415 140849 Hs.745565 NR_040415 LINC00266-1 C20orf69|NCRNA00266|NCRNA00266-1|bA476I15.3 long intergenic non-protein coding RNA 266-1 ncRNA 732-17 chr11 31993399 31994004 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger 47617 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 185-22 chr10 57412737 57412894 + 2 NA Intergenic L1MCb|LINE|L1 -108256 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 382-440 chr9 119408104 119408306 + 2 NA Intergenic L2c|LINE|L2 -38770 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 384-37 chr10 47102394 47102605 + 2 NA Intergenic Intergenic 190777 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 333-486 chr5 166814740 166814941 + 2 NA Intergenic L1ME3|LINE|L1 111530 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 307-340 chr4 79399863 79400138 + 2 NA Intergenic Intergenic 8228 NM_033214 2712 Hs.98008 NM_033214 ENSG00000196475 GK2 GKP2|GKTA glycerol kinase 2 protein-coding 367-19 chr1 96660126 96660370 + 2 NA Intergenic LTR47A2|LTR|ERVL -61357 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 205-181 chr3 74673542 74673738 + 2 NA Intergenic Intergenic -152500 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 314-86 chr11 5545978 5546245 + 2 NA promoter-TSS (NM_001005289) promoter-TSS (NM_001005289) -588 NM_001005289 390067 Hs.554540 NM_001005289 ENSG00000181616 OR52H1 OR11-41|OR11-45 olfactory receptor family 52 subfamily H member 1 protein-coding 397-129 chr18 77307131 77307459 + 2 NA Intergenic Intergenic 57447 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 536-127 chr2 116385561 116386088 + 2 NA Intergenic Intergenic 1042009 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 510-228 chr5 62054540 62055046 + 2 NA Intergenic L1MA3|LINE|L1 -251369 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 291-289 chr3 63568920 63569176 + 2 NA intron (NM_001130003, intron 4 of 5) intron (NM_001130003, intron 4 of 5) -18997 NR_046677 100874016 Hs.441275 NR_046677 ENSG00000241359 SYNPR-AS1 - SYNPR antisense RNA 1 ncRNA 262-125 chr14 57525317 57525543 + 2 NA Intergenic L1PB1|LINE|L1 -31573 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 367-78 chr11 82502033 82502217 + 2 NA Intergenic LTR12C|LTR|ERV1 -98212 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 397-257 chr5 79076975 79077231 + 2 NA intron (NM_001178005, intron 1 of 6) MLT1J|LTR|ERVL-MaLR 7336 NM_001178005 23743 Hs.114172 NM_017614 ENSG00000132840 BHMT2 - betaine--homocysteine S-methyltransferase 2 protein-coding 177-72 chr2 73815743 73815873 + 2 NA exon (NM_001080474, exon 3 of 3) exon (NM_001080474, exon 3 of 3) 7069 NM_001353344 388960 Hs.456833 NM_001080474 ENSG00000187833 C2orf78 COG5373|hCG1989538 chromosome 2 open reading frame 78 protein-coding 355-116 chr11 132508898 132509112 + 2 NA intron (NM_002545, intron 3 of 6) THE1A-int|LTR|ERVL-MaLR 224703 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 227-232 chr3 118674707 118674875 + 2 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 33023 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 584-74 chr2 78025986 78026378 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -62548 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 901-27 chr5 39800969 39801595 + 2 NA Intergenic Intergenic -251009 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 312-81 chr11 50609136 50609363 + 2 NA Intergenic ALR/Alpha|Satellite|centr 200102 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 422-278 chr7 39226970 39227353 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 101973 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 371-289 chr4 120712666 120713016 + 2 NA intron (NM_001300824, intron 12 of 13) L1ME3E|LINE|L1 210025 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 524-60 chr14 42254187 42254616 + 2 NA Intergenic Intergenic 647545 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 395-166 chr2 56060860 56061130 + 2 NA Intergenic L1PA7|LINE|L1 -13669 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 536-46 chr11 39454042 39454418 + 2 NA Intergenic L1MC5a|LINE|L1 805372 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 308-551 chrX 116042348 116042548 + 2 NA Intergenic L1PA14|LINE|L1 -73337 NR_130730 642776 Hs.634316 NR_130730 ENSG00000235244 DANT2 - DXZ4 associated non-coding transcript 2, distal ncRNA 227-192 chr2 188416468 188416689 + 2 NA intron (NM_016315, intron 2 of 11) intron (NM_016315, intron 2 of 11) 119086 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 367-378 chr5 164969699 164970026 + 2 NA Intergenic LTR25-int|LTR|ERV1 499583 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 260-39 chr10 24846271 24846464 + 2 NA Intergenic LTR88a|LTR|Gypsy? 106239 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 330-6 chr1 32428409 32428699 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -34113 NM_001143888 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 227-172 chr2 82300144 82300345 + 2 NA Intergenic L1MC4a|LINE|L1 -556559 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 179-39 chr19 36867533 36867651 + 2 NA intron (NM_001242476, intron 3 of 3) L1MC4|LINE|L1 15941 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 347-407 chr5 110194164 110194406 + 2 NA Intergenic L1M1|LINE|L1 311103 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 208-52 chr12 16710547 16710706 + 2 NA Intergenic Intergenic -102412 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 385-320 chr6 40223704 40224034 + 2 NA Intergenic Intergenic 132137 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 339-173 chr15 38907309 38907558 + 2 NA Intergenic L2|LINE|L2 210835 NR_160786 264-268 chr3 32307606 32307813 + 2 NA intron (NM_001320308, intron 1 of 2) MER5A|DNA|hAT-Charlie 69029 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 277-33 chr1 233151232 233151447 + 2 NA intron (NM_014801, intron 19 of 33) intron (NM_014801, intron 19 of 33) 144386 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 265-394 chr8 97964903 97965103 + 2 NA intron (NM_002380, intron 5 of 18) AluJb|SINE|Alu 77214 NR_002581 26775 Hs.684855 NR_002581 ENSG00000207067 SNORA72 RNU72|U72 small nucleolar RNA, H/ACA box 72 snoRNA 466-251 chr7 49885015 49885445 + 2 NA intron (NR_136188, intron 2 of 3) L1M6|LINE|L1 109897 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 462-247 chr6 39007193 39007500 + 2 NA intron (NM_001371, intron 87 of 91) intron (NM_001371, intron 87 of 91) -41435 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 572-21 chr10 125733342 125733789 + 2 NA intron (NR_110859, intron 10 of 25) intron (NR_110859, intron 10 of 25) 13856 NM_001202438 26098 Hs.468688 NM_015608 ENSG00000107938 EDRF1 C10orf137 erythroid differentiation regulatory factor 1 protein-coding 304-97 chr12 4980800 4980999 + 2 NA Intergenic Intergenic -62980 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 374-409 chr8 141857341 141857662 + 2 NA Intergenic Mam_R4|LINE|Dong-R4 -71188 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 377-211 chr2 115078315 115078571 + 2 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 13870 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 499-93 chr18 10931061 10931547 + 2 NA intron (NM_022068, intron 3 of 51) AluY|SINE|Alu -171655 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 211-60 chr12 29168387 29168590 + 2 NA intron (NM_001271783, intron 1 of 11) intron (NM_001271783, intron 1 of 11) 19210 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 282-347 chr4 96491207 96491415 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 180608 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 420-139 chr2 75946103 75946427 + 2 NA Intergenic Intergenic -235350 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 629-52 chr18 8933458 8933840 + 2 NA Intergenic LTR8B|LTR|ERV1 -169050 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 480-21 chr10 16032457 16032856 + 2 NA Intergenic L1M6|LINE|L1 -172123 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 217-280 chr5 2448402 2448577 + 2 NA Intergenic Intergenic -136288 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 289-61 chr10 75260275 75260422 + 2 NA Intergenic Intergenic -24391 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 247-134 chr15 87019756 87019909 + 2 NA intron (NM_152336, intron 24 of 24) L1PA10|LINE|L1 -31406 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 381-391 chr8 118569404 118569666 + 2 NA intron (NM_001101676, intron 2 of 4) MLT1A|LTR|ERVL-MaLR -51466 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 198-131 chr2 126011789 126011933 + 2 NA Intergenic L1MEh|LINE|L1 106124 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 496-271 chr7 136663087 136663486 + 2 NA Intergenic Intergenic -205366 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 215-57 chr11 111244840 111245052 + 2 NA promoter-TSS (NM_198498) promoter-TSS (NM_198498) -779 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 246-3 chr1 56909112 56909344 + 2 NA intron (NM_000562, intron 9 of 10) intron (NM_000562, intron 9 of 10) 54458 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 229-315 chr5 120363603 120363776 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -100589 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 565-26 chr11 58428812 58429288 + 2 NA Intergenic L1PB4|LINE|L1 -5737 NM_001005566 390190 Hs.553753 NM_001005566 ENSG00000172365 OR5B2 OR11-240|OST073 olfactory receptor family 5 subfamily B member 2 protein-coding 249-198 chr2 79875204 79875398 + 2 NA intron (NM_001282598, intron 6 of 17) intron (NM_001282598, intron 6 of 17) -8718 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 361-59 chr10 113802198 113802450 + 2 NA Intergenic Intergenic -24270 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 554-130 chr2 227862272 227862681 + 2 NA Intergenic Intergenic -8900 NR_138459 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 380-33 chr10 16706972 16707233 + 2 NA intron (NM_152724, intron 6 of 7) L1MA6|LINE|L1 110322 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 470-186 chr4 2131939 2132301 + 2 NA intron (NM_181808, intron 16 of 25) MIRc|SINE|MIR 72793 NM_178557 339983 Hs.318529 NM_178557 ENSG00000185818 NAT8L CML3|NACED|NAT8-LIKE N-acetyltransferase 8 like protein-coding 397-58 chr11 115559973 115560190 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac -55666 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 555-220 chrX 36627530 36627934 + 2 NA Intergenic L1MA3|LINE|L1 -187440 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 274-58 chr10 115048475 115048691 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -44782 NM_207303 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 313-312 chr21 23995314 23995536 + 2 NA Intergenic Intergenic 325952 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 322-67 chr10 76917847 76918121 + 2 NA intron (NM_001271519, intron 23 of 28) intron (NM_001271519, intron 23 of 28) 29940 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 157-141 chr9 115925158 115925270 + 2 NA promoter-TSS (NR_024032) promoter-TSS (NR_024032) -7 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 134-36 chr16 11503859 11503946 + 2 NA intron (NM_001370704, intron 8 of 66) intron (NM_001370704, intron 8 of 66) 23345 NM_001370704 400499 Hs.459937 NM_001370704 ENSG00000188897 LOC400499 - putative uncharacterized protein LOC400499 protein-coding 251-285 chr5 16224971 16225140 + 2 NA Intergenic Intergenic 44814 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 561-153 chr4 155127231 155127578 + 2 NA Intergenic L1MA4|LINE|L1 -81232 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 232-303 chr5 56758188 56758363 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 14596 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 290-151 chr16 6596568 6596821 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -177115 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 368-106 chr12 58561519 58561783 + 2 NA Intergenic L2a|LINE|L2 -30051 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 311-484 chr8 10413419 10413646 + 2 NA intron (NM_001199729, intron 6 of 6) L1MB7|LINE|L1 -61033 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 385-75 chr12 128274045 128274313 + 2 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 6776 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 365-37 chr10 16018603 16018918 + 2 NA Intergenic MER66D|LTR|ERV1 -158227 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 381-336 chr6 96970790 96971165 + 2 NA intron (NR_136580, intron 2 of 9) intron (NR_136580, intron 2 of 9) -39099 NM_001323264 114792 Hs.45056 NM_052904 ENSG00000186231 KLHL32 BKLHD5|KIAA1900|UG0030H05|dJ21F7.1 kelch like family member 32 protein-coding 430-56 chr11 90451480 90451794 + 2 NA intron (NR_104190, intron 1 of 6) intron (NR_104190, intron 1 of 6) 104220 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 167-22 chr10 82302691 82302830 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -69840 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 297-41 chr10 12776753 12776959 + 2 NA intron (NM_001351032, intron 7 of 11) Tigger17a|DNA|TcMar-Tigger -51503 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 234-197 chr2 188524743 188524967 + 2 NA intron (NM_016315, intron 5 of 11) intron (NM_016315, intron 5 of 11) 227363 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 305-536 chr8 83043181 83043349 + 2 NA Intergenic L2|LINE|L2 131161 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 277-193 chr2 60151275 60151548 + 2 NA Intergenic Intergenic 231625 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 335-140 chr13 53515230 53515513 + 2 NA Intergenic Intergenic -300048 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 376-259 chr3 133691381 133691598 + 2 NA intron (NM_001354703, intron 2 of 22) L2a|LINE|L2 29491 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 342-574 chrX 146520719 146520936 + 2 NA Intergenic L1MD2|LINE|L1 -288944 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 314-154 chr13 86709842 86710109 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -201945 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 344-172 chr16 31780488 31780751 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 28234 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 186-23 chr11 82751566 82751677 + 2 NA Intergenic MIRb|SINE|MIR -17757 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 222-350 chr7 91151096 91151262 + 2 NA intron (NM_012395, intron 13 of 13) intron (NM_012395, intron 13 of 13) -113254 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 265-357 chr7 39314819 39315045 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 14202 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 371-203 chr2 213437885 213438197 + 2 NA intron (NR_047660, intron 8 of 14) MLT1K|LTR|ERVL-MaLR 153577 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 992-18 chr7 11624880 11625474 + 2 NA intron (NM_015204, intron 2 of 26) (TATATG)n|Simple_repeat|Simple_repeat 207021 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 326-560 chr8 138103901 138104118 + 2 NA Intergenic Intergenic -20464 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 310-344 chr3 136545489 136545694 + 2 NA intron (NM_005862, intron 5 of 33) intron (NM_005862, intron 5 of 33) 206787 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 424-76 chr14 86708073 86708301 + 2 NA Intergenic AluSx1|SINE|Alu -197591 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 461-130 chr2 68286045 68286487 + 2 NA intron (NM_001111101, intron 2 of 2) intron (NM_001111101, intron 2 of 2) -33734 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 362-352 chr5 106895172 106895389 + 2 NA intron (NR_104671, intron 2 of 3) MLT2B2|LTR|ERVL 115734 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 233-194 chr2 184985664 184985807 + 2 NA Intergenic Intergenic 181337 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 230-99 chr13 54771330 54771553 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -403013 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 324-64 chr10 77508413 77508617 + 2 NA intron (NM_001271519, intron 1 of 28) L1MB4|LINE|L1 129293 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 376-186 chr2 81021984 81022303 + 2 NA Intergenic L1PB2|LINE|L1 444803 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 357-250 chr21 30452812 30453101 + 2 NA Intergenic Intergenic 12677 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 241-216 chr20 20377131 20377293 + 2 NA Intergenic Intergenic 9108 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 131-39 chr2 80940200 80940285 + 2 NA Intergenic Intergenic 526704 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 400-227 chr3 127833308 127833575 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -10191 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 243-360 chr5 64999314 64999514 + 2 NA intron (NM_005869, intron 13 of 13) L1MA4|LINE|L1 230484 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 343-548 chr8 103972275 103972478 + 2 NA intron (NR_145711, intron 12 of 21) L2a|LINE|L2 153156 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 369-323 chr5 42343761 42343972 + 2 NA Intergenic L1MA4A|LINE|L1 -79573 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 320-44 chr1 243922212 243922497 + 2 NA intron (NR_033883, intron 1 of 11) intron (NR_033883, intron 1 of 11) 4952 NR_033883 339529 Hs.209374 NR_033883 ENSG00000226828 LINC02774 - long intergenic non-protein coding RNA 2774 ncRNA 703-52 chr2 189399524 189400041 + 2 NA Intergenic AluJo|SINE|Alu -41651 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 302-284 chr3 62869320 62869592 + 2 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 5960 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 258-103 chr13 34392768 34392988 + 2 NA intron (NR_146542, intron 1 of 3) intron (NR_146542, intron 1 of 3) 44835 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 153-82 chr5 161765400 161765483 + 2 NA Intergenic Intergenic 79720 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 421-255 chr6 25498454 25498723 + 2 NA intron (NM_001173977, intron 16 of 36) intron (NM_001173977, intron 16 of 36) -153627 NM_006998 10590 Hs.116428 NM_006998 ENSG00000079689 SCGN CALBL|DJ501N12.8|SECRET|SEGN|setagin secretagogin, EF-hand calcium binding protein protein-coding 354-352 chr5 3372067 3372414 + 2 NA Intergenic L1MA6|LINE|L1 -80576 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 567-105 chr22 34794533 34794937 + 2 NA intron (NR_138042, intron 3 of 4) L1PA5|LINE|L1 203181 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 380-95 chr12 46546941 46547256 + 2 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 162991 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 184-134 chr5 44209608 44209746 + 2 NA Intergenic Intergenic -179055 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 392-141 chr2 34930387 34930635 + 2 NA Intergenic Intergenic 252954 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 116-16 chr18 39214295 39214391 + 2 NA intron (NR_024391, intron 3 of 3) A-rich|Low_complexity|Low_complexity 407832 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 294-128 chr14 79528383 79528636 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 249129 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 318-146 chr12 81655152 81655363 + 2 NA intron (NM_001220474, intron 2 of 30) L1M5|LINE|L1 -56886 NM_001220477 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 277-52 chr10 48680889 48681093 + 2 NA Intergenic L1ME2|LINE|L1 -3882 NM_001370154 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 532-284 chr9 75275585 75275958 + 2 NA Intergenic L1ME1|LINE|L1 187257 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 354-499 chr9 92843418 92843720 + 2 NA TTS (NM_031486) TTS (NM_031486) 33958 NR_026868 138649 Hs.643597 NM_001010925 ENSG00000187984 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 575-148 chr5 52115882 52116316 + 2 NA Intergenic Intergenic 108068 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 247-184 chr2 5385453 5385594 + 2 NA Intergenic MER45C|DNA|hAT-Tip100 305595 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 398-364 chr8 118265331 118265589 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -153641 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 318-80 chr10 85060632 85060880 + 2 NA Intergenic Intergenic 138149 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 361-147 chr14 84037700 84037880 + 2 NA Intergenic Intergenic -1234142 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 264-244 chr20 54749586 54749839 + 2 NA Intergenic LTR48|LTR|ERV1 274119 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 347-142 chr14 104009417 104009748 + 2 NA intron (NM_153046, intron 20 of 35) Tigger3b|DNA|TcMar-Tigger -67053 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 339-269 chr2 104930488 104930822 + 2 NA Intergenic Intergenic -58060 NR_110374 102682016 Hs.638438 NR_110373 ENSG00000229743 LINC01159 linc-Brn1b long intergenic non-protein coding RNA 1159 ncRNA 263-5 chr1 55805118 55805313 + 2 NA Intergenic Intergenic 139748 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 183-125 chr5 165877520 165877643 + 2 NA Intergenic L2a|LINE|L2 1048789 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 247-139 chr15 99037717 99037912 + 2 NA Intergenic L1MEd|LINE|L1 23110 NR_126487 104564224 Hs.32769 NR_126487 LUNAR1 - leukemia-associated non-coding IGF1R activator RNA 1 ncRNA 278-419 chr8 110077335 110077571 + 2 NA Intergenic Intergenic -101682 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 455-72 chr14 66944899 66945246 + 2 NA intron (NM_020806, intron 8 of 22) MER61-int|LTR|ERV1 -244368 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 356-132 chr13 80872968 80873216 + 2 NA Intergenic L1M3|LINE|L1 -145299 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 241-341 chr6 132744328 132744457 + 2 NA exon (NM_001242350, exon 5 of 5) exon (NM_001242350, exon 5 of 5) -9627 NM_001291703 55350 Hs.183656 NM_018399 VNN3 HSA238982 vanin 3 protein-coding 313-288 chr2 204161668 204161959 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 225065 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 251-331 chr6 54115767 54115931 + 2 NA intron (NM_001281747, intron 1 of 13) L2|LINE|L2 4406 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 305-443 chr5 93436039 93436251 + 2 NA intron (NR_109824, intron 4 of 5) intron (NR_109824, intron 4 of 5) 135198 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 464-84 chr16 71328669 71329033 + 2 NA Intergenic Intergenic -29862 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 326-188 chr16 59771788 59772030 + 2 NA Intergenic Intergenic -16718 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 375-87 chr11 112915649 112915857 + 2 NA Intergenic Intergenic -45667 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 352-178 chr17 14438298 14438640 + 2 NA Intergenic Intergenic 134729 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 273-478 chrX 42031352 42031501 + 2 NA Intergenic L1M4b|LINE|L1 -107872 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 561-129 chr3 45286055 45286504 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -59992 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 300-427 chr7 47557387 47557606 + 2 NA intron (NM_022748, intron 1 of 30) intron (NM_022748, intron 1 of 30) 24615 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 505-229 chr4 161289579 161289933 + 2 NA Intergenic L1MC1|LINE|L1 -732977 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 295-38 chr10 4763895 4764135 + 2 NA Intergenic MER89|LTR|ERV1 -62162 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 761-44 chr3 73878016 73878547 + 2 NA intron (NR_146637, intron 3 of 3) intron (NR_146637, intron 3 of 3) 69037 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 554-90 chr17 11635594 11635971 + 2 NA intron (NM_001372, intron 8 of 68) intron (NM_001372, intron 8 of 68) 37312 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 315-181 chr16 83655270 83655441 + 2 NA intron (NM_001220489, intron 7 of 12) MIRb|SINE|MIR 147009 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 318-246 chr2 18193402 18193692 + 2 NA Intergenic L3|LINE|CR1 314880 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 342-504 chr8 29533352 29533552 + 2 NA Intergenic HERVL-int|LTR|ERVL -182768 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 244 chr1 16909271 16909483 + 2 NA Intergenic AluJr|SINE|Alu -12554 NM_014675 9696 Hs.309403 NM_014675 ENSG00000058453 CROCC ROLT|TAX1BP2 ciliary rootlet coiled-coil, rootletin protein-coding 498-279 chr8 114981277 114981756 + 2 NA Intergenic Intergenic 686497 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 383-184 chr2 47516988 47517198 + 2 NA Intergenic Intergenic -10444 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 430-263 chr6 74002669 74003092 + 2 NA Intergenic Intergenic -66571 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 308-132 chr14 25079649 25079879 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -29467 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 422-251 chr6 1909168 1909445 + 2 NA intron (NM_001253846, intron 7 of 10) intron (NM_001253846, intron 7 of 10) 266685 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 112-5 chr10 57219410 57219480 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 85114 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 581-3 chr1 107867180 107867695 + 2 NA intron (NM_006113, intron 2 of 26) intron (NM_006113, intron 2 of 26) -29786 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 225-264 chr5 9788862 9789045 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -65424 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 218-274 chr5 110152251 110152370 + 2 NA Intergenic L1M1|LINE|L1 269128 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 361-314 chr4 32141579 32141904 + 2 NA intron (NR_125936, intron 1 of 2) LTR22A|LTR|ERVK -119319 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 372-150 chr14 72296499 72296812 + 2 NA intron (NM_001370288, intron 2 of 16) L1ME2|LINE|L1 -220165 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 173-136 chr8 32565411 32565558 + 2 NA intron (NM_013960, intron 1 of 12) L1MEd|LINE|L1 17173 NM_013957 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 431-144 chr2 129106804 129107062 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger 166958 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 330-212 chr17 69088677 69088872 + 2 NA intron (NM_080284, intron 27 of 38) L2a|LINE|L2 -10768 NR_049834 100847008 NR_049834 ENSG00000265331 MIR4524B - microRNA 4524b ncRNA 353-424 chr5 129778063 129778295 + 2 NA Intergenic L1MA4|LINE|L1 30085 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 695-41 chr17 71091198 71091640 + 2 NA Intergenic MIR3|SINE|MIR 110760 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 382-144 chr17 47767217 47767472 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 34108 NM_013351 30009 Hs.272409 NM_013351 ENSG00000073861 TBX21 T-PET|T-bet|TBET|TBLYM T-box transcription factor 21 protein-coding 264-200 chr2 62934706 62934881 + 2 NA intron (NM_001142615, intron 10 of 22) LTR87|LTR|ERVL? 112918 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 368-100 chr12 21105094 21105378 + 2 NA Intergenic Intergenic -25958 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 247-232 chr20 23098624 23098812 + 2 NA Intergenic AluSz|SINE|Alu -12394 NM_012072 22918 Hs.97199 NM_012072 ENSG00000125810 CD93 C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1 CD93 molecule protein-coding 434-237 chr5 169613707 169614092 + 2 NA Intergenic L1PB1|LINE|L1 -23376 NM_004946 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 344-125 chr13 103059153 103059335 + 2 NA intron (NM_000452, intron 1 of 5) L1PA13|LINE|L1 7173 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 246-112 chr14 44979267 44979442 + 2 NA intron (NR_131765, intron 1 of 19) MLT1A0|LTR|ERVL-MaLR 17164 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 304-150 chr14 83681601 83681770 + 2 NA Intergenic L1MB3|LINE|L1 1039053 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 280-133 chr15 26206320 26206574 + 2 NA Intergenic Intergenic 90634 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 234-15 chr1 117830756 117830943 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 98772 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 263-61 chr10 117958453 117958649 + 2 NA Intergenic AluJb|SINE|Alu -88270 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 260-306 chr4 52581462 52581652 + 2 NA Intergenic Intergenic 74982 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 150-23 chr11 108849899 108849993 + 2 NA intron (NM_004398, intron 15 of 17) intron (NM_004398, intron 15 of 17) 184877 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 322-155 chr14 65143523 65143837 + 2 NA Intergenic Intergenic -40985 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 488-297 chr9 130735959 130736284 + 2 NA intron (NM_007313, intron 1 of 10) AluJb|SINE|Alu 22240 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 257-399 chr8 10076666 10076884 + 2 NA intron (NM_001135670, intron 1 of 4) intron (NM_001135670, intron 1 of 4) -18876 NM_001199729 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 676-88 chr3 140927018 140927503 + 2 NA Intergenic AluJo|SINE|Alu -14576 NM_018155 55186 Hs.144130 NM_018155 ENSG00000114120 SLC25A36 PNC2 solute carrier family 25 member 36 protein-coding 214-158 chr2 49131147 49131330 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 23277 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 121-27 chr2 108145284 108145391 + 2 NA Intergenic Intergenic 72504 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 376-394 chr8 43590787 43591071 + 2 NA Intergenic ALR/Alpha|Satellite|centr 298487 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 210-188 chr4 32684352 32684506 + 2 NA Intergenic Intergenic 333391 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 367-420 chr7 49968960 49969280 + 2 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 124126 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 215-294 chr7 21374522 21374664 + 2 NA Intergenic L1ME4c|LINE|L1 -53490 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 400-283 chr5 59313168 59313396 + 2 NA intron (NM_001165899, intron 3 of 16) MER50-int|LTR|ERV1 -37167 NM_001197220 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 419-177 chr3 26868868 26869155 + 2 NA Intergenic L1M2|LINE|L1 174454 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 376-26 chr1 209009456 209009729 + 2 NA Intergenic MIR|SINE|MIR 37138 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 424-35 chr10 123686218 123686530 + 2 NA intron (NM_153442, intron 2 of 2) intron (NM_153442, intron 2 of 2) 20019 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 318-32 chr1 181308576 181308789 + 2 NA Intergenic L1MB3|LINE|L1 72294 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 603-43 chr14 22355471 22355810 + 2 NA Intergenic L1PA5|LINE|L1 77113 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 264-288 chr4 14800363 14800610 + 2 NA intron (NR_126435, intron 2 of 6) L1PA16|LINE|L1 87683 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 455-232 chr5 120882755 120883052 + 2 NA Intergenic L1ME3A|LINE|L1 351439 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 434-306 chr8 141954104 141954381 + 2 NA Intergenic (TGCACA)n|Simple_repeat|Simple_repeat -167929 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 168-22 chr12 33713854 33713979 + 2 NA Intergenic L1MEf|LINE|L1 -274097 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 154-75 chr3 134119424 134119539 + 2 NA Intergenic L1PB4|LINE|L1 -61833 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 394-7 chr1 71477513 71477734 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 359389 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 422-31 chr10 52797151 52797482 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -25616 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 225-383 chr9 27286478 27286622 + 2 NA intron (NM_001161585, intron 5 of 6) MIRb|SINE|MIR -3757 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 392-209 chr3 101565914 101566130 + 2 NA 3' UTR (NM_017819, exon 2 of 2) 3' UTR (NM_017819, exon 2 of 2) 4154 NM_017819 54931 Hs.594839 NM_017819 ENSG00000174173 TRMT10C COXPD30|HNYA|MRPP1|RG9MTD1 tRNA methyltransferase 10C, mitochondrial RNase P subunit protein-coding 473-248 chr6 153549258 153549553 + 2 NA Intergenic Intergenic -418123 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 209-288 chr7 3776519 3776633 + 2 NA intron (NM_152744, intron 4 of 44) MIRc|SINE|MIR -353109 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 219-211 chr20 61782574 61782744 + 2 NA intron (NM_001252339, intron 3 of 14) L1MEf|LINE|L1 -62911 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 332-331 chr3 89965920 89966102 + 2 NA Intergenic L2|LINE|L2 858390 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 529-179 chr5 96047985 96048419 + 2 NA intron (NR_130776, intron 1 of 4) L2b|LINE|L2 -30936 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 338-571 chr8 138720936 138721213 + 2 NA intron (NM_152888, intron 26 of 64) LTR106_Mam|LTR|LTR 192967 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 309-346 chr3 70607334 70607532 + 2 NA Intergenic Intergenic -294795 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 402-211 chr3 89902442 89902700 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 794950 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 910-25 chr3 13900390 13901068 + 2 NA Intergenic L1M4|LINE|L1 -20658 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 319-517 chr8 19689699 19689891 + 2 NA intron (NR_148898, intron 1 of 9) LTR54B|LTR|ERV1 -7034 NR_024040 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 368-55 chr10 56932937 56933235 + 2 NA Intergenic L1MD|LINE|L1 371473 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 407-277 chr6 55027160 55027485 + 2 NA Intergenic AluSx1|SINE|Alu -79138 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 326-408 chr5 53259239 53259406 + 2 NA Intergenic Intergenic 149480 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 270-193 chr2 147145032 147145192 + 2 NA Intergenic L1MC4a|LINE|L1 558055 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 376-311 chr5 22565210 22565475 + 2 NA intron (NM_004061, intron 1 of 14) L1M1|LINE|L1 288002 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 197-35 chr11 13947354 13947519 + 2 NA Intergenic Intergenic -15287 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 311-544 chr9 72484362 72484536 + 2 NA Intergenic Intergenic -37352 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 189-111 chr20 31351240 31351411 + 2 NA Intergenic MIR|SINE|MIR -17276 NM_054112 117285 Hs.274124 NM_054112 ENSG00000131068 DEFB118 C20orf63|DEFB-18|ESC42|ESP13.6 defensin beta 118 protein-coding 195-3 chr1 50259044 50259192 + 2 NA Intergenic Intergenic 149285 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 345-14 chr1 96556251 96556429 + 2 NA Intergenic L1MEc|LINE|L1 -165265 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 713-38 chr2 61646493 61647105 + 2 NA Intergenic (AATA)n|Simple_repeat|Simple_repeat -108443 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 529-178 chr5 95380417 95380776 + 2 NA Intergenic L2a|LINE|L2 -10770 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 254-427 chr8 129056151 129056379 + 2 NA Intergenic Intergenic -90264 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 251-306 chr5 76726739 76726957 + 2 NA intron (NM_001992, intron 1 of 1) intron (NM_001992, intron 1 of 1) 10722 NM_001311313 2149 Hs.482562 NM_001992 ENSG00000181104 F2R CF2R|HTR|PAR-1|PAR1|TR coagulation factor II thrombin receptor protein-coding 365-390 chr8 16579156 16579454 + 2 NA Intergenic L1M4|LINE|L1 -386514 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 338-217 chr17 68557128 68557359 + 2 NA intron (NM_017565, intron 1 of 10) Charlie16a|DNA|hAT-Charlie 1184 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 236-9 chr1 66854873 66855040 + 2 NA intron (NM_024763, intron 7 of 16) MER74A|LTR|ERVL -53697 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 248-228 chr21 19961934 19962127 + 2 NA Intergenic L1MA6|LINE|L1 -62275 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 123-52 chr6 71585985 71586046 + 2 NA Intergenic Intergenic 164988 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 243-98 chr12 68558447 68558658 + 2 NA Intergenic Intergenic -52347 NM_015646 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 324-498 chr7 61776152 61776340 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1527810 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 280-65 chr10 129931383 129931601 + 2 NA intron (NM_001005463, intron 6 of 15) intron (NM_001005463, intron 6 of 15) 32782 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 424-56 chr12 92891607 92891876 + 2 NA intron (NM_003566, intron 1 of 28) intron (NM_003566, intron 1 of 28) 37554 NM_003566 8411 Hs.567367 NM_003566 ENSG00000102189 EEA1 MST105|MSTP105|ZFYVE2 early endosome antigen 1 protein-coding 538-2 chr1 39622586 39623044 + 2 NA TTS (NM_014571) TTS (NM_014571) 16828 NM_014571 26508 Hs.472566 NM_014571 ENSG00000163909 HEYL HESR3|HEY3|HRT3|bHLHb33 hes related family bHLH transcription factor with YRPW motif like protein-coding 386-189 chr2 165952695 165953002 + 2 NA intron (NM_024753, intron 1 of 28) L2a|LINE|L2 928 NM_024753 79809 Hs.310672 NM_024753 ENSG00000123607 TTC21B ATD4|IFT139|IFT139B|JBTS11|NPHP12|Nbla10696|SRTD4|THM1 tetratricopeptide repeat domain 21B protein-coding 163-18 chr10 43269966 43270102 + 2 NA Intergenic L1M5|LINE|L1 -2969 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 304-154 chr15 24702953 24703203 + 2 NA Intergenic L1MC3|LINE|L1 27684 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 136-34 chr16 50277214 50277305 + 2 NA intron (NM_001114, intron 1 of 25) L1ME4b|LINE|L1 10708 NM_001114 113 Hs.513578 NM_001114 ENSG00000121281 ADCY7 AC7 adenylate cyclase 7 protein-coding 348-82 chr11 56447614 56447868 + 2 NA Intergenic Intergenic 15660 NM_001004743 390162 Hs.553749 NM_001004743 ENSG00000150269 OR5M9 OR11-190 olfactory receptor family 5 subfamily M member 9 protein-coding 150-43 chr16 78326388 78326507 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 226793 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 319-77 chr10 107310726 107311024 + 2 NA Intergenic Intergenic -146169 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 375-139 chr15 39536490 39536823 + 2 NA Intergenic Intergenic -44423 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 147-48 chr2 160612786 160612876 + 2 NA Intergenic Intergenic -119024 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 575-133 chr4 13170162 13170672 + 2 NA Intergenic Intergenic 313923 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 348-530 chr8 121524603 121524896 + 2 NA Intergenic L1ME4b|LINE|L1 -114597 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 294-294 chr3 58779172 58779404 + 2 NA intron (NM_001351532, intron 14 of 14) L1MA4A|LINE|L1 -45183 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 292-238 chr2 165163889 165164120 + 2 NA intron (NM_001081677, intron 6 of 27) intron (NM_001081677, intron 6 of 27) 40046 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 287-304 chr5 20182220 20182478 + 2 NA intron (NM_001291956, intron 2 of 14) AluSp|SINE|Alu -123202 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 124-9 chr11 21516213 21516331 + 2 NA intron (NM_201551, intron 15 of 18) MIRb|SINE|MIR -676813 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 440-96 chr18 4843061 4843456 + 2 NA Intergenic Intergenic -237924 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 730-38 chr20 39421113 39421686 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -196651 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 638-133 chr6 48988480 48988981 + 2 NA Intergenic L1PB1|LINE|L1 474523 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 397-108 chr15 98897178 98897451 + 2 NA intron (NM_000875, intron 4 of 20) intron (NM_000875, intron 4 of 20) 108342 NM_001102612 145814 Hs.592021 NM_001102612 ENSG00000183571 PGPEP1L - pyroglutamyl-peptidase I like protein-coding 230-242 chr3 154354454 154354634 + 2 NA intron (NM_001038705, intron 3 of 3) intron (NM_001038705, intron 3 of 3) -30047 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 367-8 chr1 36628253 36628460 + 2 NA Intergenic AluSx|SINE|Alu -145042 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 222-330 chr6 128790864 128791059 + 2 NA Intergenic AluSx3|SINE|Alu -92177 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 263-222 chr2 180243528 180243704 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -236319 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 232-232 chr3 8414624 8414792 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 86950 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 268-172 chr19 48505253 48505514 + 2 NA intron (NM_001080434, intron 6 of 15) AluSx|SINE|Alu 7806 NM_001080434 114783 Hs.207426 NM_001080434 ENSG00000142235 LMTK3 LMR3|PPP1R101|TYKLM3 lemur tyrosine kinase 3 protein-coding 660-85 chr5 107042015 107042628 + 2 NA Intergenic Intergenic -31307 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 332-574 chr9 104572816 104573103 + 2 NA Intergenic L1M4b|LINE|L1 3791 NM_001004483 138802 Hs.553599 NM_001004483 ENSG00000186943 OR13C8 OR37H|OR9-10 olfactory receptor family 13 subfamily C member 8 protein-coding 378-20 chr1 117692964 117693190 + 2 NA Intergenic Intergenic 87029 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 124-29 chr16 73348863 73348937 + 2 NA Intergenic Intergenic -37905 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 334-452 chr6 35696895 35697124 + 2 NA intron (NM_001145775, intron 2 of 11) L1MB7|LINE|L1 -8067 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 124-26 chr14 51230357 51230455 + 2 NA Intergenic Intergenic -9841 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 195-12 chr1 182945396 182945550 + 2 NA intron (NM_030933, intron 2 of 9) HAL1|LINE|L1 7693 NM_030933 81626 Hs.497034 NM_030933 ENSG00000157060 SHCBP1L C1orf14|GE36 SHC binding and spindle associated 1 like protein-coding 168-6 chr1 165061775 165061878 + 2 NA Intergenic Intergenic -287185 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 166-96 chr5 58475483 58475575 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -15390 NM_001252226 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 413-214 chr4 36620090 36620345 + 2 NA intron (NR_149124, intron 1 of 4) L1MB1|LINE|L1 21683 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 594-116 chr5 101011195 101011751 + 2 NA Intergenic Intergenic -108191 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 381-207 chr2 138899698 138899967 + 2 NA TTS (NR_033658) TTS (NR_033658) 2508 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 393-174 chr2 149268915 149269254 + 2 NA Intergenic L1MA2|LINE|L1 -60901 NM_001195685 130574 Hs.21929 NM_194317 ENSG00000187123 LYPD6 - LY6/PLAUR domain containing 6 protein-coding 153-80 chr5 22987544 22987631 + 2 NA Intergenic LTR54B|LTR|ERV1 -134243 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 329-13 chr1 95460864 95461135 + 2 NA Intergenic L1M6|LINE|L1 -13738 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 695-31 chr13 88171165 88171667 + 2 NA intron (NR_131919, intron 1 of 4) intron (NR_131919, intron 1 of 4) 28549 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 366-105 chr12 63532439 63532673 + 2 NA Intergenic Intergenic 135937 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 289-442 chr7 90652883 90653091 + 2 NA intron (NM_001287135, intron 2 of 14) LTR33|LTR|ERVL -56411 NM_012395 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 573 chr1 5816062 5816431 + 2 NA Intergenic Intergenic 46495 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 289-42 chr1 247425920 247426081 + 2 NA intron (NM_001127462, intron 3 of 7) intron (NM_001127462, intron 3 of 7) 7951 NM_001127462 114548 Hs.159483 NM_004895 ENSG00000162711 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1 NLR family pyrin domain containing 3 protein-coding 240-250 chr2 206363182 206363402 + 2 NA Intergenic MER4D1|LTR|ERV1 -80240 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 344-16 chr1 101588601 101588793 + 2 NA Intergenic LTR53|LTR|ERVL 258383 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 246-402 chr8 88103728 88103937 + 2 NA intron (NM_005941, intron 6 of 9) intron (NM_005941, intron 6 of 9) 223651 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 443-106 chr15 70222514 70222940 + 2 NA Intergenic Intergenic -124810 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 385-160 chr19 56978782 56979033 + 2 NA Intergenic AluJb|SINE|Alu 138005 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 225-151 chr2 50770183 50770353 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -74006 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 289-265 chr20 43363079 43363258 + 2 NA Intergenic Intergenic -94728 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 330-427 chr5 77262065 77262311 + 2 NA intron (NM_001029853, intron 1 of 20) intron (NM_001029853, intron 1 of 20) 51508 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 448-28 chr10 19112968 19113270 + 2 NA intron (NM_001142308, intron 5 of 39) intron (NM_001142308, intron 5 of 39) 64318 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 225-94 chr14 68983365 68983556 + 2 NA intron (NR_073422, intron 2 of 3) L2c|LINE|L2 3778 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 621-26 chr12 63265648 63266093 + 2 NA Intergenic L1M3d|LINE|L1 -113060 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 520-295 chr8 84749604 84750105 + 2 NA intron (NM_001287244, intron 1 of 7) MER70A|LTR|ERVL 43927 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 507-144 chr2 202892850 202893175 + 2 NA intron (NM_018256, intron 7 of 12) intron (NM_018256, intron 7 of 12) -19206 NM_001282911 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 456-321 chr8 114152462 114152816 + 2 NA Intergenic MLT2A2|LTR|ERVL -715700 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 314-493 chr6 25740253 25740446 + 2 NA Intergenic Intergenic 7916 NR_045125 387319 Hs.741681 NR_045125 HIST1H2APS1 H2AFSP|bA317E16.5 histone cluster 1 H2A pseudogene 1 pseudo 337-369 chr3 132921353 132921578 + 2 NA Intergenic L1MEd|LINE|L1 -116823 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 260-186 chr18 68239991 68240225 + 2 NA Intergenic L1ME1|LINE|L1 -425286 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 512-170 chr3 95067958 95068367 + 2 NA Intergenic L1PA4|LINE|L1 129899 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 392-224 chr4 32909006 32909269 + 2 NA Intergenic MER4D1|LTR|ERV1 558099 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 252-319 chr5 15166995 15167177 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 99474 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 213-9 chr1 85042909 85043061 + 2 NA intron (NM_018298, intron 2 of 12) intron (NM_018298, intron 2 of 12) 5515 NM_018298 55283 Hs.535239 NM_018298 ENSG00000055732 MCOLN3 TRP-ML3|TRPML3 mucolipin 3 protein-coding 355-209 chr18 4185378 4185612 + 2 NA intron (NM_001242761, intron 1 of 11) L1PREC2|LINE|L1 -79107 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 310-570 chrX 57236027 57236245 + 2 NA Intergenic L1MA6|LINE|L1 -50541 NM_001353840 158584 Hs.496205 NM_174912 ENSG00000165591 FAAH2 AMDD fatty acid amide hydrolase 2 protein-coding 318-28 chr1 175769245 175769416 + 2 NA Intergenic L3b|LINE|CR1 -25735 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 206-144 chr20 59407575 59407732 + 2 NA Intergenic Intergenic 107042 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 337-12 chr1 80261718 80261973 + 2 NA Intergenic L1PA16|LINE|L1 -273910 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 246-135 chr15 93289903 93290067 + 2 NA Intergenic Intergenic 83919 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 454-238 chr4 90475449 90475859 + 2 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 240623 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 316-98 chr11 48873027 48873188 + 2 NA Intergenic ALR/Alpha|Satellite|centr -158493 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 271-79 chr11 101893253 101893419 + 2 NA intron (NM_178127, intron 8 of 8) intron (NM_178127, intron 8 of 8) -21674 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 299-121 chr13 78393583 78393814 + 2 NA intron (NR_047001, intron 3 of 5) MIRb|SINE|MIR -202424 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 281-166 chr17 60982431 60982668 + 2 NA intron (NM_001330413, intron 14 of 25) intron (NM_001330413, intron 14 of 25) 304698 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 420-177 chr3 2405466 2405861 + 2 NA intron (NM_175607, intron 3 of 24) L1MC4a|LINE|L1 166834 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 353-517 chr8 55032109 55032313 + 2 NA Intergenic L1MA9|LINE|L1 -69817 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 193-213 chr9 26969588 26969742 + 2 NA intron (NM_001099224, intron 2 of 13) L1PB4|LINE|L1 13253 NM_001349928 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 318-129 chr12 18837672 18837943 + 2 NA Intergenic Intergenic 99688 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 369-128 chr15 25219049 25219341 + 2 NA TTS (NR_003343) TTS (NR_003343) 578 NR_003343 100033802 NR_003343 ENSG00000275524 SNORD115-26 HBII-52-26 small nucleolar RNA, C/D box 115-26 snoRNA 370-310 chr3 72557754 72558026 + 2 NA Intergenic LTR10A|LTR|ERV1 106359 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 482-260 chr8 13351737 13352113 + 2 NA intron (NM_024767, intron 4 of 4) AluSx|SINE|Alu -75141 NM_001348083 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 317-356 chr4 76440519 76440679 + 2 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) 5370 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 323-127 chr13 69603722 69603900 + 2 NA Intergenic L2a|LINE|L2 381465 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 473-78 chr14 37160329 37160673 + 2 NA intron (NM_001171170, intron 1 of 10) L1MA4A|LINE|L1 -11525 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 745-80 chr9 25689792 25690487 + 2 NA Intergenic Intergenic -11281 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 358-324 chr4 31050315 31050653 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -120660 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 492-45 chr11 95926203 95926629 + 2 NA Intergenic L1MA4A|LINE|L1 -2209 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 543-7 chr1 88596454 88596856 + 2 NA intron (NR_110682, intron 1 of 3) HERVL-int|LTR|ERVL -87489 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 510-86 chr15 25207345 25207739 + 2 NA intron (NR_146177, intron 100 of 147) intron (NR_146177, intron 100 of 147) 1280 NR_003313 100033603 NR_003313 ENSG00000199833 SNORD115-21 HBII-52-21 small nucleolar RNA, C/D box 115-21 snoRNA 265-352 chr7 11422137 11422282 + 2 NA intron (NM_015204, intron 15 of 26) Zaphod3|DNA|hAT-Tip100 409989 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 209-260 chr5 144028308 144028487 + 2 NA Intergenic Intergenic 142262 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 481-233 chr5 2854578 2854949 + 2 NA Intergenic Intergenic -63091 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 286-315 chr4 57401986 57402259 + 2 NA Intergenic MLT2B4|LTR|ERVL -23750 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 358-248 chr2 217000386 217000731 + 2 NA Intergenic Intergenic 129786 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 210-3 chr1 70577747 70577908 + 2 NA Intergenic MER31-int|LTR|ERV1 -128626 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 375-429 chr8 137635487 137635674 + 2 NA Intergenic LTR68|LTR|ERV1 -221992 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 438-258 chr7 51832219 51832614 + 2 NA Intergenic L1ME3A|LINE|L1 -439160 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 236-191 chr2 188094866 188095020 + 2 NA intron (NR_126396, intron 2 of 2) THE1B|LTR|ERVL-MaLR 192748 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 400-225 chr3 110648268 110648530 + 2 NA Intergenic AluSc|SINE|Alu 421560 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 348-448 chr6 52610961 52611184 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 33774 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 254-452 chrX 105951146 105951393 + 2 NA intron (NM_198465, intron 27 of 28) intron (NM_198465, intron 27 of 28) 87458 NM_000354 6906 Hs.76838 NM_000354 ENSG00000123561 SERPINA7 TBG|TBGQTL serpin family A member 7 protein-coding 149-43 chr17 67641823 67641919 + 2 NA intron (NM_181671, intron 6 of 9) L1ME4b|LINE|L1 -75962 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 156-14 chr10 96397934 96398069 + 2 NA intron (NM_012465, intron 10 of 20) intron (NM_012465, intron 10 of 20) -38636 NR_104297 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 293-403 chr7 48367103 48367356 + 2 NA intron (NM_152701, intron 31 of 61) L2a|LINE|L2 195771 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 502-66 chr12 34582058 34582509 + 2 NA Intergenic ALR/Alpha|Satellite|centr 559787 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 428-127 chr2 78384369 78384766 + 2 NA Intergenic L1MA3|LINE|L1 -93836 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 393-287 chr5 125614638 125614936 + 2 NA Intergenic (TATATTA)n|Simple_repeat|Simple_repeat 121526 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 342-495 chr7 84557751 84557994 + 2 NA intron (NR_110079, intron 2 of 2) L1MB1|LINE|L1 25396 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 440-160 chr3 44388032 44388363 + 2 NA intron (NM_001282915, intron 5 of 10) L1MC4|LINE|L1 34740 NM_001351479 102724231 Hs.131918 NM_001351479 C3orf86 LINC00694 chromosome 3 open reading frame 86 protein-coding 210-312 chr9 75921296 75921422 + 2 NA intron (NR_120409, intron 1 of 19) MER5B|DNA|hAT-Charlie 30686 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 432-124 chr2 51618401 51618762 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 585980 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 362-201 chr18 71740393 71740614 + 2 NA intron (NR_126324, intron 1 of 4) L1PA15-16|LINE|L1 41723 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 307-111 chr12 118791877 118792154 + 2 NA Intergenic L2a|LINE|L2 -30336 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 423-156 chr20 55643712 55643982 + 2 NA Intergenic Intergenic -216650 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 372-430 chr6 56282224 56282548 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) -34806 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 296-339 chr4 64953518 64953690 + 2 NA intron (NR_033976, intron 2 of 6) MER61A|LTR|ERV1 50896 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 405-345 chr9 90382836 90383167 + 2 NA intron (NR_109795, intron 2 of 2) intron (NR_109795, intron 2 of 2) 50488 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 284-285 chr4 59012200 59012469 + 2 NA intron (NR_133941, intron 1 of 2) L1M1|LINE|L1 -1239 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 306-17 chr1 83737908 83738061 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 122562 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 260-443 chr8 115276241 115276432 + 2 NA Intergenic L1MB1|LINE|L1 391677 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 417-39 chr10 73304681 73304989 + 2 NA intron (NM_001367801, intron 13 of 27) L1M4|LINE|L1 52094 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 318-105 chr11 60278492 60278684 + 2 NA Intergenic Intergenic -2078 NM_001243266 51338 Hs.325960 NM_024021 ENSG00000110079 MS4A4A 4SPAN1|CD20-L1|CD20L1|HDCME31P|MS4A4|MS4A7 membrane spanning 4-domains A4A protein-coding 302-278 chr3 22363528 22363700 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 406475 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 361-137 chr14 52195753 52195943 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -71850 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 509-239 chr7 113971619 113971885 + 2 NA Intergenic Intergenic -52743 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 563-11 chr1 240162349 240162723 + 2 NA intron (NM_020066, intron 2 of 17) L1MEg|LINE|L1 70653 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 476-248 chr6 169089475 169089812 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 21857 NR_134619 102724357 Hs.129310 NR_134619 ENSG00000234519 LOC102724357 - uncharacterized LOC102724357 ncRNA 376-224 chr20 58968364 58968560 + 2 NA Intergenic Intergenic -12794 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 247-409 chr8 100325817 100325984 + 2 NA intron (NM_001280539, intron 1 of 10) intron (NM_001280539, intron 1 of 10) 10304 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 286-314 chr4 56722738 56722883 + 2 NA Intergenic Intergenic -41104 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 481-315 chr9 83215547 83215900 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 51545 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 329-277 chr2 83329040 83329264 + 2 NA Intergenic Intergenic -193662 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 309-157 chr14 70263136 70263394 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -15464 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 224-106 chr16 53762643 53762799 + 2 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 58565 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 435-214 chr6 2530009 2530294 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -104349 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 506-214 chr4 148804669 148805069 + 2 NA Intergenic AluJr|SINE|Alu 137509 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 320-46 chr10 10815378 10815667 + 2 NA intron (NM_001326327, intron 1 of 14) intron (NM_001326327, intron 1 of 14) 16797 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 252-430 chr8 113925561 113925769 + 2 NA Intergenic L1ME1|LINE|L1 -488726 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 388-125 chr16 60019642 60019896 + 2 NA intron (NR_110917, intron 1 of 3) L1PB4|LINE|L1 164416 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 242-88 chr13 25179672 25179852 + 2 NA intron (NR_120428, intron 1 of 3) MLT1A0|LTR|ERVL-MaLR 239 NR_120428 101928922 Hs.585620 NR_120428 ENSG00000234056 LINC00463 AMER2-AS1 long intergenic non-protein coding RNA 463 ncRNA 750-79 chrX 47962909 47963526 + 2 NA Intergenic Intergenic 40772 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 348-106 chr12 14290568 14290869 + 2 NA Intergenic AluJb|SINE|Alu -74914 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 331-189 chr16 48006264 48006466 + 2 NA Intergenic MamRep1527|LTR|LTR 40676 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 148-99 chrX 97471979 97472111 + 2 NA intron (NM_006729, intron 26 of 26) intron (NM_006729, intron 26 of 26) 92490 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 309-242 chr2 35516298 35516553 + 2 NA Intergenic L1ME4a|LINE|L1 45020 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 261-113 chr14 78747745 78747960 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 344133 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 277-342 chr6 9853850 9854008 + 2 NA Intergenic L1PA15-16|LINE|L1 -550573 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 424-213 chr5 18524911 18525283 + 2 NA Intergenic Intergenic 717823 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 272-235 chr2 236315006 236315193 + 2 NA Intergenic L1ME3A|LINE|L1 -50754 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 198-62 chr14 20735227 20735378 + 2 NA Intergenic Intergenic -10585 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 174-132 chr6 135461209 135461366 + 2 NA intron (NM_017651, intron 7 of 27) L1ME3A|LINE|L1 36453 NM_001134831 54806 Hs.386684 NM_017651 ENSG00000135541 AHI1 AHI-1|JBTS3|ORF1|dJ71N10.1 Abelson helper integration site 1 protein-coding 255-308 chr4 187105668 187105901 + 2 NA Intergenic Intergenic -96202 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 272-147 chr17 12536660 12536902 + 2 NA Intergenic Intergenic -13187 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 432-257 chr6 140696416 140696816 + 2 NA Intergenic Intergenic 12802 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 215-97 chr15 90168624 90168792 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -16212 NM_001324030 10509 Hs.474935 NM_020210 ENSG00000185033 SEMA4B SEMAC|SemC semaphorin 4B protein-coding 298-235 chr2 150898705 150898998 + 2 NA Intergenic Intergenic 269954 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 253-5 chr1 63082887 63083087 + 2 NA Intergenic Intergenic -70516 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 216-195 chr20 22517771 22517938 + 2 NA Intergenic MER33|DNA|hAT-Charlie 60788 NR_001558 140828 Hs.9842 NR_001558 ENSG00000259974 LINC00261 ALIEN|C20orf56|DEANR1|FALCOR|HCCDR1|NCRNA00261|TCONS_00027846|onco-lncRNA-17 long intergenic non-protein coding RNA 261 ncRNA 224-115 chr17 58785121 58785283 + 2 NA intron (NM_014906, intron 1 of 6) L1ME3G|LINE|L1 29333 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 434-264 chr7 78749596 78750001 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -259190 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 264-402 chr8 31341428 31341596 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -298240 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 120-34 chr3 113722333 113722419 + 2 NA intron (NM_025146, intron 4 of 4) intron (NM_025146, intron 4 of 4) 23873 NM_025146 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 341-317 chr22 44070325 44070656 + 2 NA intron (NM_001243385, intron 1 of 12) intron (NM_001243385, intron 1 of 12) 1373 NM_001243385 29780 Hs.475074 NM_013327 ENSG00000188677 PARVB CGI-56 parvin beta protein-coding 327-221 chr19 28975332 28975504 + 2 NA Intergenic MIR|SINE|MIR 6950 NR_110760 102724958 Hs.112651 NR_110760 LOC102724958 - uncharacterized LOC102724958 ncRNA 507-210 chr6 15000567 15000894 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -245339 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 363-323 chr4 48485850 48486080 + 2 NA intron (NM_152679, intron 2 of 2) intron (NM_152679, intron 2 of 2) 2622 NM_152679 201780 Hs.132591 NM_152679 ENSG00000145248 SLC10A4 P4 solute carrier family 10 member 4 protein-coding 364-106 chr12 47329335 47329605 + 2 NA Intergenic L1MD1|LINE|L1 -22071 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 373-388 chr7 77361236 77361561 + 2 NA intron (NR_146937, intron 13 of 31) intron (NR_146937, intron 13 of 31) -53800 NR_110073 101927243 Hs.547753 NR_110073 LOC101927243 - uncharacterized LOC101927243 ncRNA 514-29 chr10 68317148 68317483 + 2 NA intron (NM_001033083, intron 1 of 8) L1M4|LINE|L1 -14378 NM_001322438 3189 Hs.643472 NM_012207 ENSG00000096746 HNRNPH3 2H9|HNRPH3 heterogeneous nuclear ribonucleoprotein H3 protein-coding 374-193 chr2 112175809 112176054 + 2 NA intron (NM_001128165, intron 4 of 6) intron (NM_001128165, intron 4 of 6) 37546 NM_001128165 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 343-376 chr4 30405113 30405411 + 2 NA Intergenic Intergenic -315107 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 403-134 chr18 5806284 5806565 + 2 NA Intergenic L1MB7|LINE|L1 -34271 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 292-251 chr20 42101235 42101493 + 2 NA intron (NM_133170, intron 27 of 31) MIR3|SINE|MIR -482987 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 276-429 chr7 52813515 52813692 + 2 NA Intergenic L1MB8|LINE|L1 -222030 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 461-249 chr7 45977829 45978237 + 2 NA Intergenic Intergenic -56761 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 189-92 chr2 107315959 107316082 + 2 NA intron (NR_049853, intron 1 of 3) L1ME1|LINE|L1 33505 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 123-10 chr11 24846684 24846779 + 2 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 349678 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 270-443 chrX 72156788 72157011 + 2 NA intron (NM_207422, intron 1 of 1) intron (NM_207422, intron 1 of 1) 12715 NM_207422 392490 Hs.660859 NM_207422 FLJ44635 - TPT1-like protein protein-coding 381-329 chr6 50164582 50164829 + 2 NA Intergenic Intergenic -114776 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 485-33 chr10 65809217 65809539 + 2 NA Intergenic Intergenic 237953 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 290-436 chr7 119586093 119586311 + 2 NA Intergenic L1M4a2|LINE|L1 321173 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 228-351 chr8 125103841 125104028 + 2 NA intron (NM_001349486, intron 3 of 7) L1MEc|LINE|L1 12074 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 366-123 chr14 42650636 42650890 + 2 NA Intergenic Intergenic 1043907 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 518-7 chr1 170579658 170580154 + 2 NA Intergenic Intergenic -47297 NR_125958 101928650 Hs.676662 NR_125958 GORAB-AS1 - GORAB antisense RNA 1 ncRNA 472-66 chr12 103379020 103379304 + 2 NA intron (NR_103526, intron 3 of 10) intron (NR_103526, intron 3 of 10) 116806 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 744-74 chr8 77453690 77454283 + 2 NA intron (NR_125830, intron 1 of 2) L2a|LINE|L2 3289 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 273-66 chr10 117270905 117271167 + 2 NA intron (NM_003054, intron 15 of 15) intron (NM_003054, intron 15 of 15) 29922 NM_003054 6571 Hs.596992 NM_003054 ENSG00000165646 SLC18A2 PKDYS2|SVAT|SVMT|VAT2|VMAT2 solute carrier family 18 member A2 protein-coding 522-161 chr21 20359595 20360046 + 2 NA Intergenic Intergenic -101135 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 246-263 chr3 102353892 102354077 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -81031 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 654-124 chr8 111034534 111035021 + 2 NA Intergenic L1PA16|LINE|L1 -7344 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 372-52 chr10 77964524 77964760 + 2 NA Intergenic Charlie3|DNA|hAT-Charlie 37830 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 308-532 chr9 25279316 25279507 + 2 NA Intergenic L1ME1|LINE|L1 399447 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 262-308 chr4 58977626 58977819 + 2 NA Intergenic L1MD|LINE|L1 -6560 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 394-296 chr6 145182265 145182567 + 2 NA Intergenic L1PA8|LINE|L1 504461 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 336-436 chr4 158533462 158533697 + 2 NA intron (NR_045583, intron 1 of 16) intron (NR_045583, intron 1 of 16) 11697 NM_001253732 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 279-24 chr1 221170092 221170257 + 2 NA Intergenic Intergenic 166122 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 208-17 chr1 212574280 212574443 + 2 NA intron (NM_001030287, intron 1 of 3) L1ME2z|LINE|L1 9027 NM_001030287 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 251-253 chr3 162858034 162858203 + 2 NA Intergenic L1MA4|LINE|L1 445183 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 185-152 chr4 123172300 123172404 + 2 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -224443 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 649-33 chr17 13749052 13749474 + 2 NA Intergenic Intergenic -147334 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 162-132 chr8 91576867 91576988 + 2 NA Intergenic Intergenic 327608 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 387-197 chr20 15567578 15567918 + 2 NA intron (NM_001351663, intron 8 of 17) MER102a|DNA|hAT-Charlie 355566 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 344-339 chr3 186642644 186642960 + 2 NA intron (NM_001308077, intron 2 of 5) intron (NM_001308077, intron 2 of 5) 2403 NM_001308077 26998 Hs.81073 NM_014375 ENSG00000090512 FETUB 16G2|Gugu|IRL685 fetuin B protein-coding 885-24 chr6 98432913 98433737 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 398375 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 166-84 chr4 47238037 47238140 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 206521 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 362-88 chr11 44674396 44674629 + 2 NA Intergenic Intergenic -52450 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 349-34 chr1 209385848 209386124 + 2 NA Intergenic LTR29|LTR|ERV1 13931 NR_146491 101929476 Hs.568721 NR_146491 LINC01698 - long intergenic non-protein coding RNA 1698 ncRNA 175-14 chr1 176998994 176999127 + 2 NA intron (NM_207108, intron 8 of 21) intron (NM_207108, intron 8 of 21) 30385 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 308-337 chr4 65830249 65830507 + 2 NA Intergenic Intergenic -159883 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 644-75 chr5 16020288 16020826 + 2 NA Intergenic Intergenic 85375 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 419-2 chr1 36820926 36821342 + 2 NA intron (NM_000831, intron 11 of 15) intron (NM_000831, intron 11 of 15) 213381 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 324-206 chr16 63251400 63251580 + 2 NA Intergenic Intergenic -1215052 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 873-31 chr6 61930861 61931614 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 354988 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 446-82 chr12 88046477 88046784 + 2 NA intron (NM_001009894, intron 5 of 6) intron (NM_001009894, intron 5 of 6) 11094 NM_001009894 91298 Hs.591009 NM_001009894 ENSG00000133641 C12orf29 - chromosome 12 open reading frame 29 protein-coding 378-27 chr1 163518921 163519196 + 2 NA Intergenic L1MA3|LINE|L1 -95867 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 353-212 chr18 59418667 59418976 + 2 NA Intergenic Intergenic -59556 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 366-8 chr1 69368832 69369055 + 2 NA Intergenic L1PREC2|LINE|L1 -64312 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 550-134 chr20 43280766 43281240 + 2 NA Intergenic MER102c|DNA|hAT-Charlie -91097 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 337-229 chr19 30443207 30443444 + 2 NA intron (NM_014717, intron 1 of 4) intron (NM_014717, intron 1 of 4) 70941 NM_001352260 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 117-24 chr20 50827055 50827139 + 2 NA intron (NM_017843, intron 2 of 5) L1MD3|LINE|L1 32203 NM_001010974 55653 Hs.381178 NM_017843 ENSG00000124243 BCAS4 CNOL breast carcinoma amplified sequence 4 protein-coding 230-312 chr5 125847114 125847315 + 2 NA Intergenic Intergenic -332363 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 517-154 chr20 14586391 14586860 + 2 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 32241 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 558-170 chr5 27227010 27227426 + 2 NA Intergenic Intergenic -188632 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 208-103 chr19 32148006 32148193 + 2 NA Intergenic L1MDa|LINE|L1 -42183 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 195-217 chr6 124481567 124481751 + 2 NA intron (NM_001300738, intron 4 of 7) intron (NM_001300738, intron 4 of 7) 198654 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 371-250 chr3 105486029 105486391 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 119301 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 600-82 chr3 7598981 7599481 + 2 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -63947 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 205-2 chr1 14058201 14058371 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy 308871 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 138-35 chr18 32778620 32778735 + 2 NA Intergenic L2c|LINE|L2 -5654 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 225-237 chr4 39203858 39204071 + 2 NA intron (NM_025132, intron 7 of 36) intron (NM_025132, intron 7 of 36) 21435 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 471-179 chr3 193901680 193901989 + 2 NA Intergenic L2a|LINE|L2 -57825 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 292-19 chr1 101464459 101464694 + 2 NA Intergenic Intergenic 140739 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 505-155 chr2 103896717 103897024 + 2 NA Intergenic Intergenic 511462 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 509 chr1 29973828 29974265 + 2 NA Intergenic Intergenic 63566 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 279-91 chr13 44010879 44011039 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -11376 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 172-7 chr1 225274524 225274625 + 2 NA intron (NM_001367479, intron 52 of 85) L1P4|LINE|L1 153464 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 450-125 chr19 29935296 29935719 + 2 NA intron (NM_001252641, intron 1 of 10) L1M4|LINE|L1 -6732 NM_003796 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 238-61 chr10 130822590 130822800 + 2 NA Intergenic Intergenic 139973 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 472-144 chr19 56756567 56756908 + 2 NA Intergenic MER20|DNA|hAT-Charlie -8585 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 217-373 chr8 118145334 118145497 + 2 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -33596 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 700-42 chr19 12370996 12371497 + 2 NA Intergenic Intergenic -5563 NM_030824 79973 Hs.253193 NM_030824 ENSG00000198342 ZNF442 - zinc finger protein 442 protein-coding 343-575 chr9 16128475 16128729 + 2 NA Intergenic Intergenic 124505 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 254-95 chr13 50074043 50074271 + 2 NA intron (NR_152566, intron 2 of 13) intron (NR_152566, intron 2 of 13) 7884 NR_152567 8847 Hs.547964 NR_002612 ENSG00000231607 DLEU2 ALT1|BCMSUN|DLB2|LEU2|LINC00022|MIR15AHG|NCRNA00022|RFP2|RFP2OS|TRIM13OS deleted in lymphocytic leukemia 2 ncRNA 584-123 chr4 164673734 164674243 + 2 NA Intergenic AluJr|SINE|Alu -80143 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 243-197 chr2 37541929 37542109 + 2 NA Intergenic Intergenic 130180 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 268-448 chrX 95124668 95124859 + 2 NA Intergenic Intergenic -61537 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 259-268 chr3 178548549 178548763 + 2 NA intron (NR_126560, intron 5 of 7) intron (NR_126560, intron 5 of 7) -10194 NM_005832 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 323-140 chr14 45001774 45002043 + 2 NA intron (NR_131765, intron 3 of 19) intron (NR_131765, intron 3 of 19) 39718 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 146-6 chr1 177068514 177068618 + 2 NA intron (NM_207108, intron 1 of 21) intron (NM_207108, intron 1 of 21) -39121 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 322-179 chr15 70023081 70023311 + 2 NA Intergenic MER66B|LTR|ERV1 56272 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 535-142 chr2 193615609 193615964 + 2 NA Intergenic Intergenic -728483 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 313-315 chr21 37305910 37306166 + 2 NA Intergenic L1MB7|LINE|L1 -37930 NM_001331022 10311 Hs.369488 NM_006052 ENSG00000157538 VPS26C DCRA|DSCR3|DSCRA VPS26 endosomal protein sorting factor C protein-coding 323-302 chr21 14412221 14412458 + 2 NA Intergenic Intergenic -29193 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 325-548 chr8 119989641 119989821 + 2 NA intron (NM_022783, intron 4 of 8) MIR|SINE|MIR 116009 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 240-359 chr5 127814881 127815024 + 2 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 111563 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 346-462 chr7 42533328 42533521 + 2 NA Intergenic L1PA11|LINE|L1 173023 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 432-229 chr5 110365096 110365375 + 2 NA Intergenic L2a|LINE|L2 148680 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 331-74 chr10 126354378 126354554 + 2 NA intron (NM_001288974, intron 1 of 18) intron (NM_001288974, intron 1 of 18) 34011 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 341-66 chr10 77515049 77515351 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 122608 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 392-213 chr3 140648864 140649093 + 2 NA Intergenic L1M4|LINE|L1 -29086 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 277-178 chr2 19546885 19547073 + 2 NA Intergenic Intergenic -188356 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 780-32 chr20 5279926 5280586 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 36476 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 235-31 chr10 12767648 12767784 + 2 NA intron (NM_001351032, intron 6 of 11) MER4A1_|LTR|ERV1 -42363 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 371-334 chr6 44947052 44947366 + 2 NA intron (NM_181356, intron 11 of 12) Tigger1|DNA|TcMar-Tigger 250561 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 319-452 chr6 27434800 27435044 + 2 NA intron (NR_144688, intron 5 of 8) L1MB4|LINE|L1 37976 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 312-372 chr4 58926293 58926558 + 2 NA Intergenic L1MB1|LINE|L1 -57857 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 196-209 chr5 97734480 97734635 + 2 NA Intergenic L1M4a2|LINE|L1 -106201 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 327-400 chr5 68875123 68875311 + 2 NA Intergenic AluSx1|SINE|Alu 154710 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 230-35 chr10 32902289 32902429 + 2 NA promoter-TSS (NR_132768) promoter-TSS (NR_132768) -887 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 369-200 chr2 84817776 84818027 + 2 NA intron (NM_001370, intron 76 of 76) MSTB1|LTR|ERVL-MaLR 63183 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 414-215 chr3 113443589 113443976 + 2 NA 3' UTR (NM_144718, exon 18 of 18) 3' UTR (NM_144718, exon 18 of 18) -2268 NM_018338 55779 Hs.584936 NM_018338 ENSG00000206530 CFAP44 SPGF20|WDR52 cilia and flagella associated protein 44 protein-coding 404-279 chr6 140137714 140137965 + 2 NA Intergenic MIRb|SINE|MIR -67413 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 241-229 chr22 33452684 33452910 + 2 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -16128 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 697-77 chr9 36483620 36484053 + 2 NA Intergenic Intergenic -82638 NM_194330 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 391-153 chr19 34889768 34890048 + 2 NA Intergenic Intergenic 9035 NR_046222 100652909 Hs.374015 NR_046222 ENSG00000271649 LINC00904 - long intergenic non-protein coding RNA 904 ncRNA 472-282 chr6 119013776 119014099 + 2 NA intron (NM_024581, intron 5 of 17) MIRc|SINE|MIR 55206 NR_030315 693128 NR_030315 ENSG00000207982 MIR548B MIRN548B microRNA 548b ncRNA 209-96 chr14 71912561 71912742 + 2 NA Intergenic Intergenic -19520 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 222-164 chr2 22128446 22128605 + 2 NA Intergenic L1MA8|LINE|L1 -407954 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 398-370 chr8 130434083 130434399 + 2 NA intron (NM_001362925, intron 1 of 29) AluJb|SINE|Alu 9419 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 190-51 chr14 20064181 20064338 + 2 NA Intergenic Intergenic 4214 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 292-96 chr12 28748902 28749157 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -400249 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 224-334 chr8 121043300 121043422 + 2 NA Intergenic Intergenic -231315 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 264-331 chr5 93044284 93044512 + 2 NA Intergenic AluSz6|SINE|Alu 526945 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 384-356 chr7 117192045 117192412 + 2 NA intron (NR_002332, intron 6 of 8) intron (NR_002332, intron 6 of 8) 9547 NR_002332 93655 Hs.368131 NR_002332 ENSG00000004866 ST7-OT3 NCRNA00026|ST7|ST7OT3 ST7 overlapping transcript 3 ncRNA 634-121 chr4 176200652 176201087 + 2 NA Intergenic Intergenic -5284 NM_144644 132851 Hs.481235 NM_144644 ENSG00000150628 SPATA4 SPEF1B|TSARG2 spermatogenesis associated 4 protein-coding 319-97 chr11 97029895 97030095 + 2 NA Intergenic L1PA11|LINE|L1 521570 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 394-329 chr8 105035737 105035964 + 2 NA Intergenic L1ME1|LINE|L1 -282588 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 228-141 chr18 11720766 11720937 + 2 NA intron (NM_182978, intron 1 of 11) Cheshire|DNA|hAT-Charlie -30621 NM_001142339 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 531-119 chr2 145850295 145850589 + 2 NA Intergenic Intergenic -736615 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 395-118 chr16 11442524 11442737 + 2 NA intron (NM_001370704, intron 33 of 66) MER102b|DNA|hAT-Charlie -22630 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 420-294 chr8 121855350 121855682 + 2 NA Intergenic L1PA16|LINE|L1 -214076 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 275-370 chr8 129669686 129669920 + 2 NA intron (NR_130917, intron 1 of 3) THE1B-int|LTR|ERVL-MaLR 10436 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 123-40 chr4 116505340 116505440 + 2 NA Intergenic L2a|LINE|L2 205665 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 451-253 chr9 80539962 80540338 + 2 NA Intergenic AluJr|SINE|Alu 565127 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 334-551 chr8 130863049 130863277 + 2 NA intron (NM_001115, intron 9 of 17) L1MC3|LINE|L1 177746 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 247-40 chr10 56316076 56316278 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 45082 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 414-42 chr11 26715184 26715500 + 2 NA intron (NM_178498, intron 1 of 14) intron (NM_178498, intron 1 of 14) 6718 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 211-53 chr11 87364724 87364903 + 2 NA Intergenic Intergenic 326879 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 212-226 chr3 164257354 164257516 + 2 NA Intergenic L1PA8|LINE|L1 -85879 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 314-57 chr10 22905554 22905847 + 2 NA Intergenic Intergenic -22324 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 303-147 chr15 87960115 87960393 + 2 NA intron (NM_001320135, intron 12 of 15) intron (NM_001320135, intron 12 of 15) -13986 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 313-65 chr10 118427391 118427664 + 2 NA Intergenic Intergenic 70419 NR_108045 100506126 Hs.69494 NR_108045 ENSG00000232139 LINC00867 - long intergenic non-protein coding RNA 867 ncRNA 308-279 chr22 26922493 26922653 + 2 NA Intergenic Intergenic 19281 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 320-88 chr11 57956961 57957145 + 2 NA Intergenic Intergenic -66828 NM_001005212 219956 Hs.689841 NM_001005212 ENSG00000186509 OR9Q1 - olfactory receptor family 9 subfamily Q member 1 protein-coding 655-65 chr2 211349297 211349726 + 2 NA Intergenic Intergenic 731940 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 424-300 chrX 73142351 73142743 + 2 NA Intergenic L1MDa|LINE|L1 -14467 NR_027291 645996 Hs.617486 NR_027291 ENSG00000204118 NAP1L6 - nucleosome assembly protein 1 like 6 pseudo 197-218 chr8 131633847 131634017 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -270161 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 257-257 chr22 28546299 28546501 + 2 NA intron (NM_001145418, intron 2 of 22) AluSg|SINE|Alu 86531 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 368-139 chr14 49473915 49474213 + 2 NA Intergenic AluJo|SINE|Alu 112316 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 291-434 chr8 50693905 50694080 + 2 NA intron (NR_135797, intron 17 of 20) L1M1|LINE|L1 529861 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 290-460 chr8 116723593 116723870 + 2 NA intron (NM_003756, intron 2 of 7) L1MB2|LINE|L1 32092 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 309-501 chr6 170030512 170030724 + 2 NA Intergenic Intergenic 67995 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 197-210 chr8 120267519 120267665 + 2 NA intron (NM_021110, intron 25 of 47) intron (NM_021110, intron 25 of 47) 142490 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 301-490 chr9 121411385 121411635 + 2 NA Intergenic MLT2B1|LTR|ERVL -41206 NM_001270527 2040 Hs.253903 NM_004099 ENSG00000148175 STOM BND7|EPB7|EPB72 stomatin protein-coding 355-174 chr15 89030776 89031022 + 2 NA Intergenic LTR12C|LTR|ERV1 -57557 NM_152924 11057 Hs.122337 NM_007011 ENSG00000140526 ABHD2 HS1-2|LABH2|PHPS1-2 abhydrolase domain containing 2 protein-coding 389-206 chr20 45178462 45178738 + 2 NA Intergenic Intergenic 3698 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 330-49 chr10 14418016 14418254 + 2 NA Intergenic Intergenic -18441 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 381-131 chr16 82347641 82347863 + 2 NA Intergenic MIRb|SINE|MIR -177528 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 262-193 chr2 19028326 19028528 + 2 NA Intergenic Intergenic -1456 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 222-24 chr1 218581861 218582058 + 2 NA intron (NR_031644, intron 2 of 6) L1ME2|LINE|L1 71864 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 192-95 chr2 28555495 28555646 + 2 NA intron (NM_001170585, intron 17 of 56) intron (NM_001170585, intron 17 of 56) -10787 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 719-36 chr19 34756195 34756706 + 2 NA Intergenic Tigger17|DNA|TcMar-Tigger 16765 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 335-244 chr2 58867512 58867727 + 2 NA intron (NR_033873, intron 3 of 13) MER21A|LTR|ERVL 346866 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 148-25 chr14 48520420 48520521 + 2 NA Intergenic Intergenic -725456 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 637-78 chr21 22685272 22685764 + 2 NA Intergenic Intergenic -393766 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 258-304 chr4 181873329 181873488 + 2 NA Intergenic L1ME2|LINE|L1 -43435 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 353-211 chr18 55003397 55003602 + 2 NA Intergenic Intergenic -44038 NM_025214 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 235-220 chr22 34142676 34142836 + 2 NA Intergenic L1PA13|LINE|L1 -219868 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 246-119 chr14 68522450 68522616 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 106254 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 201-175 chr4 57609827 57609994 + 2 NA Intergenic L2b|LINE|L2 184038 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 604-174 chr9 113045384 113045799 + 2 NA intron (NM_003408, intron 3 of 3) MLT1O|LTR|ERVL-MaLR 11133 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 410-48 chr11 30642930 30643138 + 2 NA Intergenic PABL_A-int|LTR|ERV1 -56681 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 294-252 chr2 223655300 223655568 + 2 NA Intergenic L2|LINE|L2 -53073 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 559-66 chr16 72713380 72713872 + 2 NA Intergenic L1M4c|LINE|L1 -48656 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 214-40 chr10 65758602 65758737 + 2 NA intron (NR_120647, intron 5 of 5) intron (NR_120647, intron 5 of 5) 187244 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 316-502 chr7 4244256 4244527 + 2 NA intron (NM_001079653, intron 17 of 19) intron (NM_001079653, intron 17 of 19) -109554 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 313-184 chr16 51694261 51694528 + 2 NA Intergenic L1MC3|LINE|L1 -68125 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 171-94 chr4 76641848 76642009 + 2 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 66377 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 334-553 chr8 135818836 135819151 + 2 NA Intergenic Intergenic 361537 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 416-203 chr20 40626245 40626575 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 62826 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 429-207 chr4 29837177 29837589 + 2 NA Intergenic L1MEf|LINE|L1 623091 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 184-17 chr1 181881633 181881811 + 2 NA Intergenic L1MD|LINE|L1 179990 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 201-126 chr2 139598307 139598452 + 2 NA Intergenic Intergenic 701055 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 448-239 chr6 49023359 49023803 + 2 NA Intergenic L1PA16|LINE|L1 439672 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 207-91 chr15 25941181 25941366 + 2 NA intron (NR_040082, intron 1 of 4) MLT1B|LTR|ERVL-MaLR 38913 NR_040082 100128714 Hs.587854 NR_040082 ENSG00000206187 LINC02346 - long intergenic non-protein coding RNA 2346 ncRNA 357-365 chr5 145663891 145664111 + 2 NA Intergenic MIRc|SINE|MIR 171341 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 522-145 chr2 137755066 137755429 + 2 NA Intergenic Intergenic 172685 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 450-18 chr1 213436203 213436581 + 2 NA Intergenic Intergenic 385151 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 214-213 chr3 110588119 110588291 + 2 NA Intergenic L1ME3Cz|LINE|L1 481754 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 262-446 chr9 12936789 12937037 + 2 NA Intergenic Intergenic 35720 NR_132976 106635615 NR_132976 SNORD137 - small nucleolar RNA, C/D box 137 snoRNA 288-286 chr4 7231046 7231240 + 2 NA intron (NM_020777, intron 1 of 26) MLT2B4|LTR|ERVL 38605 NM_020777 57537 Hs.479099 NM_020777 ENSG00000184985 SORCS2 - sortilin related VPS10 domain containing receptor 2 protein-coding 463-10 chr1 65279519 65279787 + 2 NA intron (NM_014787, intron 1 of 18) intron (NM_014787, intron 1 of 18) 14904 NM_014787 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 520-338 chrX 147594103 147594472 + 2 NA Intergenic Intergenic -309559 NR_030240 574518 NR_030240 ENSG00000207867 MIR514A3 MIR514-3|MIRN514-3|hsa-mir-514a-3 microRNA 514a-3 ncRNA 219-178 chr2 117776240 117776422 + 2 NA Intergenic Intergenic -38360 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 204-171 chr21 22019008 22019200 + 2 NA intron (NR_109959, intron 4 of 5) intron (NR_109959, intron 4 of 5) 79355 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 333-401 chr4 87245410 87245629 + 2 NA Intergenic L1MB7|LINE|L1 -24901 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 467-54 chr11 100517589 100517892 + 2 NA Intergenic MSTB1-int|LTR|ERVL-MaLR -169548 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 218-90 chr14 44736280 44736461 + 2 NA Intergenic HAL1ME|LINE|L1 62756 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 623-32 chr13 89473131 89473643 + 2 NA Intergenic L1PA13|LINE|L1 27122 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 461-150 chr2 228427668 228428078 + 2 NA Intergenic L1MCc|LINE|L1 183522 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 244-295 chr5 35985006 35985169 + 2 NA intron (NM_001171873, intron 3 of 5) L1MA4|LINE|L1 6303 NM_152404 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 313-306 chr20 29264815 29265067 + 2 NA Intergenic ALR/Alpha|Satellite|centr 152020 NR_037925 647476 Hs.274541 NR_037925 FRG2EP - FSHD region gene 2 family member E, pseudogene pseudo 544-221 chr8 46768832 46769186 + 2 NA Intergenic Intergenic -71877 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 558-19 chr10 28071157 28071604 + 2 NA intron (NR_134518, intron 11 of 16) intron (NR_134518, intron 11 of 16) 1998 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 671-72 chr4 107267049 107267628 + 2 NA Intergenic Intergenic -231025 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 760-17 chr14 78976153 78976713 + 2 NA intron (NR_073547, intron 13 of 20) intron (NR_073547, intron 13 of 20) -223549 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 306-121 chr13 34228813 34229082 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -119096 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 305-163 chr14 101140185 101140422 + 2 NA Intergenic L1M4|LINE|L1 19447 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 579-75 chr2 131002456 131002905 + 2 NA intron (NM_001367493, intron 4 of 13) AluY|SINE|Alu 90482 NM_001321747 130074 Hs.534679 NM_001009993 ENSG00000152102 FAM168B MANI family with sequence similarity 168 member B protein-coding 203-152 chr3 107718507 107718676 + 2 NA intron (NM_001276286, intron 5 of 16) intron (NM_001276286, intron 5 of 16) 159477 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 430-127 chr18 63786457 63786774 + 2 NA intron (NM_001261831, intron 2 of 6) intron (NM_001261831, intron 2 of 6) 8838 NM_001261830 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 366-458 chr8 137952758 137953048 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 130642 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 634-153 chr8 116339103 116339708 + 2 NA Intergenic Intergenic -14346 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 848-37 chr5 62797558 62798149 + 2 NA Intergenic LTR101_Mam|LTR|ERVL 219034 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 309-590 chrX 139149451 139149678 + 2 NA intron (NM_001139501, intron 2 of 7) AmnSINE1|SINE|5S-Deu-L2 55459 NM_001139500 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 352-12 chr1 67285427 67285682 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -21810 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 364-381 chr6 66985557 66985919 + 2 NA Intergenic L1MA7|LINE|L1 -1069613 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 278-120 chr14 80737935 80738117 + 2 NA intron (NM_152446, intron 19 of 24) intron (NM_152446, intron 19 of 24) 203712 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 497-203 chr4 78405401 78405784 + 2 NA intron (NM_001166133, intron 30 of 41) intron (NM_001166133, intron 30 of 41) 116607 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 288-12 chr1 80476603 80476781 + 2 NA Intergenic Intergenic -59063 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 714-10 chr10 70028246 70028757 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -24345 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 216-31 chr10 28051120 28051304 + 2 NA non-coding (NR_134517, exon 17 of 17) non-coding (NR_134517, exon 17 of 17) 22166 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 490-292 chr8 86214367 86214706 + 2 NA exon (NM_138817, exon 4 of 4) exon (NM_138817, exon 4 of 4) 15845 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 749-65 chr3 96634797 96635372 + 2 NA Intergenic L1MA9|LINE|L1 -179510 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 193-54 chr14 26035883 26036059 + 2 NA Intergenic Intergenic 517459 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 316-485 chr6 62093610 62093863 + 2 NA intron (NR_146874, intron 2 of 13) L1MA6|LINE|L1 192489 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 320-466 chr5 150769111 150769301 + 2 NA Intergenic LTR37B|LTR|ERV1 -8740 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 385-29 chr10 53535443 53535655 + 2 NA Intergenic AluSx1|SINE|Alu -763849 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 314-130 chr12 52664218 52664524 + 2 NA Intergenic L2c|LINE|L2 -12160 NM_000423 3849 Hs.707 NM_000423 ENSG00000172867 KRT2 CK-2e|K2e|KRT2A|KRT2E|KRTE keratin 2 protein-coding 212-62 chr11 37646007 37646178 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -292509 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 245-184 chr2 29660647 29660815 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -185354 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 271-444 chr8 92191462 92191625 + 2 NA Intergenic Intergenic -88158 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 337-267 chr2 120194606 120194851 + 2 NA Intergenic L1M4c|LINE|L1 28672 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 480-292 chr8 79266389 79266755 + 2 NA Intergenic Intergenic -65616 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 188-33 chr12 9832483 9832628 + 2 NA intron (NM_001291823, intron 2 of 2) L2b|LINE|L2 5074 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 557-197 chr8 83580819 83581169 + 2 NA Intergenic Intergenic 177236 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 406-298 chr8 95774425 95774682 + 2 NA intron (NR_038205, intron 2 of 2) intron (NR_038205, intron 2 of 2) 173795 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 171-12 chr1 244558416 244558558 + 2 NA intron (NM_001130957, intron 9 of 21) L1MEf|LINE|L1 -94561 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 291-403 chr7 41057756 41057960 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -43746 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 310-2 chr1 39578816 39579055 + 2 NA Intergenic L2a|LINE|L2 -2145 NM_001135654 8761 Hs.169900 NM_003819 ENSG00000090621 PABPC4 APP-1|APP1|PABP4|iPABP poly(A) binding protein cytoplasmic 4 protein-coding 284-397 chr8 32984815 32984985 + 2 NA Intergenic Intergenic 263065 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 290-111 chr12 112607856 112608040 + 2 NA intron (NM_001347952, intron 1 of 21) intron (NM_001347952, intron 1 of 21) 32712 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 223-242 chr4 34036312 34036490 + 2 NA intron (NR_125902, intron 1 of 4) intron (NR_125902, intron 1 of 4) 3492 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 322-495 chr7 78753504 78753673 + 2 NA intron (NM_001301128, intron 2 of 20) L1MEf|LINE|L1 -255400 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 317-337 chr4 33197583 33197770 + 2 NA Intergenic L2a|LINE|L2 842217 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 298-124 chr14 71002185 71002427 + 2 NA intron (NM_014982, intron 8 of 35) intron (NM_014982, intron 8 of 35) 94847 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 286-384 chr6 41212329 41212497 + 2 NA intron (NR_027256, intron 3 of 4) intron (NR_027256, intron 3 of 4) 5534 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 443-79 chr13 33273705 33273985 + 2 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -3709 NR_046693 100874241 Hs.662433 NR_046693 ENSG00000236581 STARD13-AS STARD13-AS2 STARD13 antisense RNA ncRNA 486-147 chr2 106339044 106339391 + 2 NA Intergenic Intergenic -30528 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 355-294 chr21 27801567 27801754 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 79281 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 318-70 chr10 70275682 70275898 + 2 NA intron (NM_022146, intron 1 of 3) L1M5|LINE|L1 8214 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 266-444 chr9 26217418 26217608 + 2 NA Intergenic Intergenic 150838 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 271-294 chr4 23362731 23362966 + 2 NA Intergenic Intergenic 518444 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 212-274 chr6 22634617 22634766 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 65125 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 264-109 chr13 49328265 49328455 + 2 NA intron (NM_001079670, intron 10 of 10) L1ME3Cz|LINE|L1 73182 NM_030925 81617 Hs.87159 NM_030925 ENSG00000102547 CAB39L MO25-BETA|MO2L|bA103J18.3 calcium binding protein 39 like protein-coding 324-549 chr8 126634010 126634197 + 2 NA Intergenic Intergenic -75625 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 531-103 chr2 35698787 35699123 + 2 NA Intergenic Intergenic 227550 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 225-51 chr11 17838627 17838778 + 2 NA intron (NR_104040, intron 11 of 11) MIRb|SINE|MIR 102754 NM_001112741 3746 Hs.552896 NM_004976 ENSG00000129159 KCNC1 EPM7|KV3.1|KV4|NGK2 potassium voltage-gated channel subfamily C member 1 protein-coding 848-4 chr10 4323164 4323852 + 2 NA Intergenic Intergenic -60738 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 253-107 chr12 84169036 84169253 + 2 NA Intergenic Intergenic 743655 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 409-50 chr12 38526221 38526597 + 2 NA Intergenic MIRb|SINE|MIR 209635 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 286-6 chr1 37254376 37254537 + 2 NA Intergenic Intergenic 92893 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 423-32 chr10 88162853 88163168 + 2 NA Intergenic Intergenic 299385 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 268-379 chr7 86998230 86998428 + 2 NA intron (NM_001142749, intron 1 of 21) intron (NM_001142749, intron 1 of 21) -32430 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 409-132 chr2 18778895 18779218 + 2 NA Intergenic Intergenic -189476 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 313-421 chr5 29640238 29640429 + 2 NA Intergenic Intergenic -240227 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 387-337 chr7 28221443 28221662 + 2 NA intron (NR_034097, intron 3 of 3) intron (NR_034097, intron 3 of 3) -40757 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 247-256 chr3 33982009 33982241 + 2 NA Intergenic Intergenic 183495 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 460-19 chr1 217709091 217709471 + 2 NA intron (NM_138796, intron 5 of 10) MLT1F2|LTR|ERVL-MaLR 75839 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 240-121 chr13 70017930 70018093 + 2 NA intron (NM_020866, intron 1 of 10) intron (NM_020866, intron 1 of 10) -89202 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 402-147 chr2 56462428 56462702 + 2 NA Intergenic Charlie3|DNA|hAT-Charlie -276795 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 385-207 chr20 24443249 24443461 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -25844 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 253-112 chr12 130425899 130426059 + 2 NA intron (NM_001351226, intron 15 of 21) intron (NM_001351226, intron 15 of 21) 88092 NM_001190971 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 615-96 chr4 67127800 67128408 + 2 NA Intergenic Intergenic 293896 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 359-36 chr1 208502592 208502839 + 2 NA Intergenic Intergenic -225973 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 349-371 chr4 63943565 63943763 + 2 NA Intergenic Intergenic 465786 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 324-221 chr18 3682683 3682915 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 79062 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 284-265 chr3 95835800 95836018 + 2 NA Intergenic PRIMA4_LTR|LTR|ERV1 -152716 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 464-106 chr19 37201131 37201500 + 2 NA intron (NM_152279, intron 2 of 4) intron (NM_152279, intron 2 of 4) 9221 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 193-159 chr4 177711666 177711767 + 2 NA Intergenic L1ME4a|LINE|L1 -17041 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 286-179 chr19 29176380 29176535 + 2 NA Intergenic L1MA2|LINE|L1 36694 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 520-145 chr2 77331310 77331637 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 190903 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 275-159 chr18 38244886 38245094 + 2 NA Intergenic Intergenic 587855 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 307-297 chr3 35073654 35073915 + 2 NA intron (NR_110817, intron 2 of 3) (ATAC)n|Simple_repeat|Simple_repeat 320239 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 718-33 chr17_GL000205v2_random 23128 23575 + 2 NA Intergenic CER|Satellite|Satellite 34615 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 234-366 chr7 51692038 51692249 + 2 NA Intergenic L1ME4a|LINE|L1 -298887 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 346-129 chr14 38644905 38645078 + 2 NA Intergenic Intergenic -237605 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 322-303 chr21 30044693 30044979 + 2 NA Intergenic Intergenic -104784 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 563-145 chr5 6143119 6143512 + 2 NA Intergenic LTR50|LTR|ERVL 193977 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 349-67 chr10 75793146 75793326 + 2 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 10475 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 370-405 chr6 158983055 158983383 + 2 NA intron (NM_001346418, intron 2 of 5) intron (NM_001346418, intron 2 of 5) 16968 NR_144434 83861 Hs.154628 NM_031924 ENSG00000130363 RSPH3 CILD32|RSHL2|RSP3|dJ111C20.1 radial spoke head 3 protein-coding 470-199 chr4 115214361 115214747 + 2 NA Intergenic Intergenic -100934 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 130-54 chr3 56091715 56091821 + 2 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -239174 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 321-356 chr22 47977276 47977436 + 2 NA Intergenic L1ME3A|LINE|L1 -297008 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 375-14 chr1 90699928 90700300 + 2 NA Intergenic Intergenic 17188 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 269-270 chr4 43172551 43172778 + 2 NA Intergenic L1PA10|LINE|L1 279398 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 357-354 chr5 110342653 110342994 + 2 NA Intergenic Intergenic 171092 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 270-240 chr3 97025371 97025573 + 2 NA intron (NM_001080448, intron 3 of 17) L1P3|LINE|L1 210878 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 306-455 chr7 15321732 15321885 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 240207 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 358-245 chr2 207385188 207385422 + 2 NA Intergenic Intergenic -115881 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 319-511 chr7 119522413 119522582 + 2 NA Intergenic Intergenic 384878 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 374-226 chr20 58028092 58028410 + 2 NA Intergenic L2b|LINE|L2 24347 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 262-26 chr1 218235679 218235833 + 2 NA Intergenic Intergenic -49537 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 290-137 chr14 73826235 73826407 + 2 NA intron (NR_135238, intron 1 of 1) AluJo|SINE|Alu 3814 NR_135238 100506498 Hs.569330 NR_135238 ENSG00000258586 LINC02274 - long intergenic non-protein coding RNA 2274 ncRNA 325-102 chr11 43075810 43076104 + 2 NA Intergenic Intergenic 193412 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 283-98 chr12 37876107 37876322 + 2 NA Intergenic ALR/Alpha|Satellite|centr -440560 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 576-10 chr1 216649277 216649692 + 2 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 73945 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 146-56 chr3 80670282 80670363 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -94575 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 217-375 chr8 122030684 122030848 + 2 NA Intergenic Intergenic -389326 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 224-51 chr11 86660484 86660676 + 2 NA intron (NM_001014811, intron 1 of 13) MIRb|SINE|MIR 11618 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 390-34 chr10 39302885 39303127 + 2 NA Intergenic ALR/Alpha|Satellite|centr 606410 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 163-41 chr13 69661447 69661603 + 2 NA Intergenic Intergenic 439179 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 337-197 chr17 11503531 11503833 + 2 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -94788 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 229-217 chr2 211494279 211494482 + 2 NA intron (NM_001042599, intron 20 of 26) intron (NM_001042599, intron 20 of 26) 876809 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 313-511 chr7 125778018 125778181 + 2 NA Intergenic Intergenic -513808 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 180-136 chr5 75212142 75212280 + 2 NA intron (NM_001164443, intron 3 of 24) intron (NM_001164443, intron 3 of 24) 24667 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 533-190 chr5 147161983 147162342 + 2 NA Intergenic MIRb|SINE|MIR 72697 NR_147190 105378217 Hs.162649 NR_147190 STK32A-AS1 - STK32A antisense RNA 1 ncRNA 329-507 chr6 126893635 126893854 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -224927 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 272-487 chrX 52329083 52329268 + 2 NA Intergenic MLT2D|LTR|ERVL 7467 NR_107055 102466880 NR_107055 ENSG00000275335 MIR8088 hsa-mir-8088 microRNA 8088 ncRNA 286-238 chr2 228400993 228401160 + 2 NA Intergenic L1PA16|LINE|L1 210319 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 434-58 chr12 9151691 9152016 + 2 NA intron (NM_002864, intron 32 of 35) intron (NM_002864, intron 32 of 35) -35624 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 227-21 chr1 217121685 217121903 + 2 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) 15908 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 415 chr1 5121797 5122076 + 2 NA Intergenic MER34A1|LTR|ERV1 467327 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 307-279 chr21 19957345 19957630 + 2 NA Intergenic L1MA6|LINE|L1 -57732 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 259-123 chr14 68056130 68056376 + 2 NA intron (NM_133509, intron 7 of 10) AluSx|SINE|Alu 232661 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 281-202 chr2 49098559 49098701 + 2 NA intron (NM_000145, intron 1 of 9) intron (NM_000145, intron 1 of 9) 39027 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 222-7 chr1 100322573 100322761 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -22348 NM_001319211 8556 Hs.127411 NM_003672 ENSG00000079335 CDC14A DFNB105|DFNB32|DFNB35|cdc14|hCDC14 cell division cycle 14A protein-coding 242-360 chr7 15542616 15542771 + 2 NA intron (NM_001004320, intron 3 of 12) intron (NM_001004320, intron 3 of 12) 19322 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 326-319 chr22 48727824 48728000 + 2 NA intron (NM_001082967, intron 3 of 3) intron (NM_001082967, intron 3 of 3) -52383 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 243-170 chr17 71042563 71042763 + 2 NA Intergenic Intergenic 159516 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 323-300 chr20 61833800 61834012 + 2 NA intron (NM_001252339, intron 3 of 14) intron (NM_001252339, intron 3 of 14) -114158 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 271-150 chr15 82687095 82687326 + 2 NA 3' UTR (NM_001348440, exon 5 of 5) 3' UTR (NM_001348440, exon 5 of 5) 22665 NM_004644 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 EIEE48|NAPTB adaptor related protein complex 3 subunit beta 2 protein-coding 427-25 chr10 65189071 65189398 + 2 NA Intergenic L1MB8|LINE|L1 -264716 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 331-241 chr2 3979835 3980042 + 2 NA Intergenic MIRc|SINE|MIR 5777 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 407-28 chr10 39376343 39376557 + 2 NA Intergenic ALR/Alpha|Satellite|centr 679854 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 404-310 chr8 62902544 62902746 + 2 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -75216 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 541-243 chr8 124921004 124921368 + 2 NA Intergenic Intergenic -20822 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 669-61 chr20 4361436 4361967 + 2 NA Intergenic MLT2A2|LTR|ERVL -112414 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 356-234 chr2 48091025 48091333 + 2 NA Intergenic L2c|LINE|L2 -185386 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 290-400 chr6 153985730 153985981 + 2 NA Intergenic Intergenic -24641 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 528-9 chr1 73247426 73247785 + 2 NA Intergenic Intergenic -58565 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 316-374 chr3 186981567 186981815 + 2 NA intron (NM_173216, intron 2 of 7) intron (NM_173216, intron 2 of 7) -40164 NM_003032 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 283-292 chr3 59706025 59706232 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac -47631 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 170-102 chr4 30436212 30436337 + 2 NA Intergenic Intergenic -284095 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 194-2 chr1 19971962 19972095 + 2 NA Intergenic L1MEh|LINE|L1 7631 NM_001161729 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 330-46 chr1 247047752 247048009 + 2 NA intron (NM_033213, intron 1 of 3) THE1D-int|LTR|ERVL-MaLR 30931 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 330-361 chr3 134119066 134119232 + 2 NA Intergenic L1PB4|LINE|L1 -61501 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 235-302 chr6 44575915 44576034 + 2 NA Intergenic MIR|SINE|MIR -24093 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 232-165 chr2 41963799 41963934 + 2 NA Intergenic Intergenic -10060 NR_161189 400950 Hs.738713 NM_001242815 ENSG00000205086 C2orf91 - chromosome 2 open reading frame 91 ncRNA 333-444 chr5 45055021 45055304 + 2 NA Intergenic Intergenic 246215 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 347-275 chr20 58104329 58104619 + 2 NA Intergenic Intergenic -46428 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 239-137 chr17 74419845 74420017 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -12157 NM_022036 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 361-190 chr18 77817728 77818078 + 2 NA Intergenic Intergenic 175824 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 348-24 chr1 159451513 159451841 + 2 NA Intergenic L1MC3|LINE|L1 11955 NM_012351 26476 Hs.532661 NM_012351 ENSG00000196184 OR10J1 HGMP07J|HSHGMP07J olfactory receptor family 10 subfamily J member 1 protein-coding 525-133 chr2 174654714 174655093 + 2 NA intron (NM_001077269, intron 1 of 7) intron (NM_001077269, intron 1 of 7) -20298 NM_003387 7456 Hs.128067 NM_003387 ENSG00000115935 WIPF1 PRPL-2|WAS2|WASPIP|WIP WAS/WASL interacting protein family member 1 protein-coding 339-73 chr10 105170315 105170514 + 2 NA intron (NM_014978, intron 13 of 26) intron (NM_014978, intron 13 of 26) -504198 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 395-103 chr15 19977616 19977840 + 2 NA Intergenic MLT2A2|LTR|ERVL -305016 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 427-222 chr6 38862123 38862509 + 2 NA exon (NM_001206927, exon 44 of 93) exon (NM_001206927, exon 44 of 93) 90791 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 493-36 chr10 81236096 81236376 + 2 NA Intergenic L1PA10|LINE|L1 586439 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 141-39 chr2 40055367 40055469 + 2 NA intron (NR_038441, intron 2 of 4) L1MA9|LINE|L1 137784 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 316-16 chr1 85050614 85050863 + 2 NA Intergenic L1M5|LINE|L1 -2198 NM_001253693 55283 Hs.535239 NM_018298 ENSG00000055732 MCOLN3 TRP-ML3|TRPML3 mucolipin 3 protein-coding 793-22 chr17 68394261 68394747 + 2 NA intron (NM_001352899, intron 9 of 12) AluJr|SINE|Alu -19119 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 342-444 chr6 24338479 24338680 + 2 NA intron (NM_016356, intron 2 of 9) L2b|LINE|L2 -18324 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 614-72 chr21 27230702 27231127 + 2 NA Intergenic MIR|SINE|MIR -263826 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 416-305 chr7 29522716 29522990 + 2 NA Intergenic L1M2|LINE|L1 39037 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 246-288 chr4 32842456 32842644 + 2 NA Intergenic Intergenic 491512 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 370-193 chr18 22263180 22263537 + 2 NA Intergenic L1MEi|LINE|L1 93921 NM_005257 2627 Hs.514746 NM_005257 ENSG00000141448 GATA6 - GATA binding protein 6 protein-coding 113-51 chr8 58211300 58211407 + 2 NA Intergenic Intergenic 60748 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 969-13 chr18 52134451 52135059 + 2 NA Intergenic Intergenic -205442 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 348-208 chr19 7890103 7890406 + 2 NA intron (NM_001268285, intron 1 of 1) intron (NM_001268285, intron 1 of 1) 1744 NM_025061 80131 Hs.501511 NM_025061 ENSG00000171017 LRRC8E - leucine rich repeat containing 8 VRAC subunit E protein-coding 366-33 chr1 224936439 224936641 + 2 NA intron (NM_001349912, intron 1 of 5) L1MA4|LINE|L1 6865 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 468-306 chr7 105952244 105952540 + 2 NA Intergenic Intergenic -10872 NM_001301161 222256 Hs.150120 NM_152750 ENSG00000128536 CDHR3 CDH28 cadherin related family member 3 protein-coding 199-162 chr3 83406142 83406331 + 2 NA Intergenic Intergenic 1420094 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 476-88 chr14 87365533 87365871 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 289592 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 516-104 chr18 2171878 2172202 + 2 NA Intergenic LTR26B|LTR|ERV1 399465 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 664-89 chr5 105095599 105095965 + 2 NA Intergenic L1MA2|LINE|L1 -3692 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 224-200 chr3 68321339 68321551 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -179192 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 439-7 chr1 67922972 67923266 + 2 NA intron (NR_040077, intron 1 of 9) LTR54|LTR|ERV1 -89652 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 351-274 chr21 28781274 28781496 + 2 NA Intergenic Intergenic 103982 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 329-366 chr3 83096259 83096507 + 2 NA Intergenic MLT2C2|LTR|ERVL 1110241 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 302-378 chr6 52021185 52021421 + 2 NA intron (NM_138694, intron 33 of 66) intron (NM_138694, intron 33 of 66) 66310 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 187-193 chrX 124784386 124784521 + 2 NA intron (NM_014253, intron 3 of 30) intron (NM_014253, intron 3 of 30) 179364 NM_001163278 10178 Hs.23796 NM_014253 ENSG00000009694 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1|ten-1 teneurin transmembrane protein 1 protein-coding 387-219 chr3 17436053 17436319 + 2 NA intron (NM_014744, intron 3 of 21) MIR|SINE|MIR 263834 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 197-213 chr8 129543367 129543514 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 31578 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 368-477 chr9 27914214 27914521 + 2 NA Intergenic L1MC1|LINE|L1 -340501 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 574-167 chr7 49804409 49804810 + 2 NA intron (NR_136188, intron 2 of 3) intron (NR_136188, intron 2 of 3) 29276 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 522-39 chr11 21914952 21915397 + 2 NA Intergenic Intergenic -277911 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 351-207 chr2 18317438 18317682 + 2 NA Intergenic Intergenic 243093 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 741-20 chr14 83895674 83896385 + 2 NA Intergenic Intergenic 1253397 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 277-133 chr16 22903886 22904093 + 2 NA intron (NM_006043, intron 1 of 1) LTR105_Mam|LTR|ERVL 89827 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 563-170 chr7 33564469 33564969 + 2 NA intron (NM_001362679, intron 21 of 21) intron (NM_001362679, intron 21 of 21) -340196 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 144-17 chr11 92681184 92681288 + 2 NA intron (NM_001008781, intron 2 of 24) L2a|LINE|L2 234392 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 520-91 chr14 56985450 56985852 + 2 NA Intergenic Intergenic 172493 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 331-469 chr6 130567908 130568104 + 2 NA Intergenic L1MA2|LINE|L1 130889 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 359-52 chr10 39375166 39375464 + 2 NA Intergenic ALR/Alpha|Satellite|centr 678719 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 337-30 chr1 194150976 194151280 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy 846383 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 334-43 chr10 2263825 2264023 + 2 NA Intergenic Intergenic 51150 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 233-355 chr7 51977087 51977289 + 2 NA Intergenic Intergenic -583932 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 315-292 chr21 29949832 29950115 + 2 NA Intergenic AluJr|SINE|Alu -9921 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 234-133 chr17 52259393 52259563 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -99461 NM_001082534 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 641-111 chr8 106561322 106561800 + 2 NA intron (NM_018002, intron 3 of 15) L1PA7|LINE|L1 -96247 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 309-193 chr16 82325352 82325523 + 2 NA Intergenic Intergenic -155213 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 188-124 chr3 16098323 16098495 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -76271 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 299-465 chr8 121504092 121504323 + 2 NA Intergenic Intergenic -135139 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 186-74 chr2 28229456 28229614 + 2 NA intron (NM_199193, intron 8 of 13) intron (NM_199193, intron 8 of 13) -22574 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 346-311 chr3 54668402 54668707 + 2 NA intron (NM_018398, intron 11 of 37) MER131|DNA?|DNA? -28697 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 285-426 chr8 119125401 119125582 + 2 NA Intergenic Intergenic -56709 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 201-78 chr14 68083098 68083268 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 259591 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 349-235 chr19 57720431 57720639 + 2 NA exon (NM_001321376, exon 5 of 5) exon (NM_001321376, exon 5 of 5) 7089 NM_001321375 79891 Hs.180402 NM_024833 ENSG00000083814 ZNF671 - zinc finger protein 671 protein-coding 411-267 chr6 166052012 166052405 + 2 NA Intergenic L1ME1|LINE|L1 -45512 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 365-111 chr13 70237364 70237688 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -129033 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 216-18 chr1 112207439 112207599 + 2 NA Intergenic L1MEc|LINE|L1 -188695 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 583-174 chr9 119773133 119773563 + 2 NA Intergenic Intergenic -161712 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 180-128 chr5 15068824 15068941 + 2 NA Intergenic MLT2A2|LTR|ERVL -197104 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 186-16 chr10 54955153 54955330 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -153950 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 268-186 chr2 33197343 33197570 + 2 NA intron (NM_206943, intron 7 of 33) intron (NM_206943, intron 7 of 33) 62859 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 207-2 chr1 30798292 30798453 + 2 NA Intergenic MER102b|DNA|hAT-Charlie -26280 NR_146732 105378622 Hs.209284 NR_146732 ENSG00000223382 LINC01778 - long intergenic non-protein coding RNA 1778 ncRNA 274-68 chr11 37046884 37047098 + 2 NA Intergenic L1ME3D|LINE|L1 -448712 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 381-389 chr8 116271922 116272136 + 2 NA intron (NR_046215, intron 2 of 13) L1PA15|LINE|L1 53030 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 638-28 chr12 1403243 1403877 + 2 NA intron (NR_027948, intron 16 of 19) intron (NR_027948, intron 16 of 19) -96931 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 228-80 chr13 22245424 22245586 + 2 NA intron (NR_103810, intron 1 of 1) intron (NR_103810, intron 1 of 1) 35220 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 367-433 chr8 4711736 4712005 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 283044 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 545-221 chr7 34377487 34377862 + 2 NA intron (NR_033665, intron 3 of 3) MSTB|LTR|ERVL-MaLR -280544 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 727-2 chr1 71131776 71132470 + 2 NA intron (NR_046217, intron 2 of 3) L1MA9|LINE|L1 50799 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 312-134 chr14 33097259 33097535 + 2 NA intron (NM_001164749, intron 2 of 11) L1ME3A|LINE|L1 158518 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 220-258 chr4 63269053 63269202 + 2 NA Intergenic Intergenic -1107362 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 375-273 chr3 149362820 149363132 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 14673 NM_014220 4071 Hs.351316 NM_014220 ENSG00000169908 TM4SF1 H-L6|L6|M3S1|TAAL6 transmembrane 4 L six family member 1 protein-coding 331-500 chr7 64873585 64873793 + 2 NA Intergenic Intergenic -29553 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 324-243 chr19 51669443 51669705 + 2 NA Intergenic Intergenic -19860 NM_001316994 147650 Hs.467174 NM_207324 ENSG00000182310 SPACA6 LET7EH|LINC00085|NCRNA00085|SPACA6P sperm acrosome associated 6 protein-coding 187-89 chr2 213778473 213778653 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) 20496 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 335-54 chr10 57291827 57292069 + 2 NA Intergenic Intergenic 12611 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 157-30 chr12 111841285 111841400 + 2 NA promoter-TSS (NM_139078) promoter-TSS (NM_139078) 588 NR_152606 51275 Hs.333120 NR_015404 ENSG00000234608 MAPKAPK5-AS1 C12orf47 MAPKAPK5 antisense RNA 1 ncRNA 415-277 chr8 51127877 51128127 + 2 NA Intergenic Intergenic 681443 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 479-131 chr22 34295168 34295574 + 2 NA Intergenic MER112|DNA|hAT-Charlie -372483 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 252-89 chr12 39947393 39947539 + 2 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 158615 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 606-102 chr3 2952931 2953316 + 2 NA intron (NM_175607, intron 13 of 24) intron (NM_175607, intron 13 of 24) 60908 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 761-43 chr3 72541598 72542189 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -95270 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 381-412 chr9 123196620 123196943 + 2 NA intron (NR_033234, intron 1 of 18) L1MA3|LINE|L1 71805 NR_033234 55342 Hs.287659 NM_018387 ENSG00000165209 STRBP HEL162|ILF3L|SPNR|p74 spermatid perinuclear RNA binding protein protein-coding 301-240 chr2 203796273 203796516 + 2 NA Intergenic Intergenic -71377 NM_005214 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 261-393 chr8 132424929 132425102 + 2 NA intron (NM_004519, intron 1 of 14) MLT1C|LTR|ERVL-MaLR 22247 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 303-265 chr21 28480749 28480924 + 2 NA Intergenic Intergenic -58482 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 898-39 chr8 109068642 109069185 + 2 NA Intergenic Intergenic -17715 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 416-162 chr2 28842020 28842289 + 2 NA intron (NM_182756, intron 7 of 7) MIR|SINE|MIR 26157 NM_001008779 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 336-599 chrX 84986654 84986851 + 2 NA Intergenic Intergenic -17125 NM_198450 139322 Hs.512181 NM_198450 ENSG00000155008 APOOL CXorf33|FAM121A|MICOS27|Mic27|UNQ8193 apolipoprotein O like protein-coding 273-326 chr4 66497245 66497460 + 2 NA Intergenic Intergenic 220528 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 350-539 chr8 129160728 129161049 + 2 NA Intergenic Intergenic 80352 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 308-280 chr22 27427575 27427781 + 2 NA Intergenic (TCTC)n|Simple_repeat|Simple_repeat 117027 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 345-428 chr5 102538632 102538832 + 2 NA Intergenic MamRep1879|DNA|hAT-Tip100? -39731 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 119-64 chrX 87328671 87328730 + 2 NA Intergenic L1PB4|LINE|L1 -189102 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 393-163 chr2 74946363 74946618 + 2 NA Intergenic L1MB7|LINE|L1 -12153 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 325-467 chr5 159382994 159383162 + 2 NA Intergenic AluSz|SINE|Alu 51560 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 483-111 chr2 61716121 61716550 + 2 NA Intergenic Intergenic 137725 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 278-69 chr12 27278850 27279049 + 2 NA intron (NM_015000, intron 1 of 13) intron (NM_015000, intron 1 of 13) 34663 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 228-81 chr13 24130852 24130984 + 2 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -29802 NM_153023 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 317-397 chr5 129025267 129025546 + 2 NA intron (NM_001017372, intron 6 of 9) MIR|SINE|MIR 59918 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 398-17 chr1 168159284 168159616 + 2 NA Intergenic L1MA5A|LINE|L1 -19512 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 434-286 chr8 105608930 105609191 + 2 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 289517 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 338-174 chr15 24824027 24824353 + 2 NA intron (NM_022808, intron 1 of 11) intron (NM_022808, intron 1 of 11) 582 NM_022807 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 372-389 chr5 15503776 15504142 + 2 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 2521 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 563-69 chr17 58857512 58857874 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 101824 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 458-191 chr4 117938664 117939041 + 2 NA Intergenic L1PA8A|LINE|L1 -94470 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 328-219 chr18 7377836 7378067 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie 83055 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 218-272 chr5 102667164 102667292 + 2 NA intron (NR_103753, intron 1 of 2) intron (NR_103753, intron 1 of 2) 4236 NR_103754 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 394-227 chr3 181988202 181988516 + 2 NA intron (NR_104146, intron 5 of 7) intron (NR_104146, intron 5 of 7) 35995 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 492-186 chr4 46198494 46198853 + 2 NA Intergenic MIRb|SINE|MIR -74619 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 266-258 chr3 102280284 102280438 + 2 NA Intergenic L1P4a|LINE|L1 116656 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 650-99 chr5 155509801 155510196 + 2 NA Intergenic Intergenic 496243 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 319-490 chr7 4651271 4651534 + 2 NA Intergenic Intergenic -30893 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 255-217 chr2 186445731 186445884 + 2 NA Intergenic Intergenic -40453 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 429-299 chr8 80931101 80931443 + 2 NA Intergenic Intergenic -56491 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 249-394 chr7 112944590 112944786 + 2 NA Intergenic Intergenic -4813 NM_152556 154743 Hs.489734 NM_152556 ENSG00000164603 BMT2 C7orf60|SAMTOR base methyltransferase of 25S rRNA 2 homolog protein-coding 477-7 chr1 44048326 44048774 + 2 NA Intergenic Intergenic -17088 NM_001328630 6536 Hs.442590 NM_006934 ENSG00000196517 SLC6A9 GCENSG|GLYT1 solute carrier family 6 member 9 protein-coding 497-161 chr21 20499228 20499685 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -240771 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 439-217 chr4 148398479 148398760 + 2 NA intron (NM_000901, intron 2 of 8) MIRb|SINE|MIR 43795 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 242-140 chr17 73019446 73019635 + 2 NA intron (NM_001352692, intron 4 of 9) L1MEf|LINE|L1 73148 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 350-444 chr6 86660309 86660518 + 2 NA Intergenic L1PB1|LINE|L1 -277115 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 490-218 chr5 68099477 68099857 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -90209 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 419-276 chr7 64927744 64928055 + 2 NA exon (NM_021148, exon 4 of 4) exon (NM_021148, exon 4 of 4) 24657 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 277-305 chr5 9537036 9537230 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 8942 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 384-382 chr8 126029602 126029965 + 2 NA Intergenic L1MB8|LINE|L1 -78586 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 202-165 chr3 81705182 81705370 + 2 NA intron (NM_000158, intron 2 of 15) Tigger9a|DNA|TcMar-Tigger 56369 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 332-565 chr9 35141777 35142048 + 2 NA Intergenic MER52-int|LTR|ERV1 -20097 NM_001371189 321-367 chr3 40248737 40248959 + 2 NA intron (NM_001284424, intron 12 of 15) intron (NM_001284424, intron 12 of 15) 60850 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 202-203 chr5 33271004 33271170 + 2 NA Intergenic Intergenic 41352 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 222-214 chr20 60849706 60849885 + 2 NA Intergenic Intergenic -229269 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 443-207 chr3 107030370 107030748 + 2 NA Intergenic L1PA17|LINE|L1 210079 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 324-573 chr9 118287104 118287324 + 2 NA Intergenic L1ME3A|LINE|L1 -392457 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 404-35 chr10 44011984 44012235 + 2 NA Intergenic Intergenic 99707 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 537-2 chr1 34114403 34114799 + 2 NA intron (NM_052896, intron 1 of 69) AluJr4|SINE|Alu 50673 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 538-216 chr6 162947481 162947860 + 2 NA intron (NM_001080379, intron 2 of 4) L1MA4|LINE|L1 106491 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 178-117 chr6 45347455 45347569 + 2 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) 19182 NM_001024630 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 261-190 chr2 122448057 122448241 + 2 NA Intergenic L1MB7|LINE|L1 625332 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 560-9 chr1 210961294 210961801 + 2 NA intron (NM_002238, intron 6 of 10) L1ME1|LINE|L1 171827 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 301-166 chr17 65782536 65782743 + 2 NA intron (NM_001353129, intron 21 of 26) L1PA16|LINE|L1 43812 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 321-328 chr20 15880661 15880849 + 2 NA intron (NM_001351663, intron 9 of 17) LTR16C|LTR|ERVL 42559 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 365-380 chr7 72132786 72132998 + 2 NA intron (NM_001363460, intron 2 of 5) MER1B|DNA|hAT-Charlie 204499 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 338-448 chr5 125784067 125784327 + 2 NA Intergenic L1MC2|LINE|L1 290936 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 305-534 chr8 78766645 78766828 + 2 NA intron (NM_001199886, intron 2 of 4) L1ME3G|LINE|L1 38727 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 246-412 chr8 111670592 111670762 + 2 NA Intergenic MER57A-int|LTR|ERV1 294038 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 521-67 chr12 54868599 54868992 + 2 NA Intergenic Intergenic 14279 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 188-158 chr4 144222458 144222579 + 2 NA Intergenic Intergenic -81800 NM_001308187 2993 Hs.434973 NM_002099 ENSG00000170180 GYPA CD235a|GPA|GPErik|GPSAT|HGpMiV|HGpMiXI|HGpSta(C)|MN|MNS|PAS-2 glycophorin A (MNS blood group) protein-coding 274-287 chr4 75081827 75081970 + 2 NA TTS (NR_149051) TTS (NR_149051) 2810 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 194-105 chr2 218869112 218869294 + 2 NA intron (NM_006522, intron 1 of 3) intron (NM_006522, intron 1 of 3) 9398 NM_006522 7475 Hs.29764 NM_006522 ENSG00000115596 WNT6 - Wnt family member 6 protein-coding 260-416 chr7 107432207 107432405 + 2 NA intron (NM_181733, intron 6 of 20) intron (NM_181733, intron 6 of 20) -37751 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 233-247 chr3 178682899 178683056 + 2 NA intron (NM_001278911, intron 1 of 4) L1PA16|LINE|L1 124127 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 311-244 chr2 48352032 48352324 + 2 NA intron (NM_002158, intron 3 of 6) intron (NM_002158, intron 3 of 6) 37496 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 209-182 chr21 24297066 24297185 + 2 NA Intergenic L1PA7|LINE|L1 24252 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 195-203 chr5 132100336 132100515 + 2 NA Intergenic L2a|LINE|L2 26636 NM_000758 1437 Hs.1349 NM_000758 ENSG00000164400 CSF2 CSF|GMCSF colony stimulating factor 2 protein-coding 230-20 chr1 159643944 159644137 + 2 NA Intergenic HERVL-int|LTR|ERVL 56214 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 173-27 chr12 118930851 118930987 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -50622 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 215-161 chr2 183409520 183409698 + 2 NA Intergenic Intergenic 285166 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 174-136 chr7 15840608 15840739 + 2 NA Intergenic Intergenic 152295 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 473-123 chr2 8072746 8073057 + 2 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) -96087 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 160-8 chr1 213840277 213840410 + 2 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -84406 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 249-337 chr5 88237938 88238125 + 2 NA intron (NM_001349403, intron 1 of 10) MER2|DNA|TcMar-Tigger 30814 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 344-90 chr11 112155104 112155312 + 2 NA intron (NM_001243211, intron 1 of 4) intron (NM_001243211, intron 1 of 4) 8886 NM_001243211 3606 Hs.83077 NM_001562 ENSG00000150782 IL18 IGIF|IL-18|IL-1g|IL1F4 interleukin 18 protein-coding 203-191 chr5 151953414 151953515 + 2 NA Intergenic Intergenic -5434 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 868-46 chr8 124809516 124810039 + 2 NA Intergenic Intergenic -12208 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 465-139 chr2 153288321 153288617 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger 190293 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 321-308 chr2 168616273 168616496 + 2 NA intron (NM_001256126, intron 3 of 10) L1PB1|LINE|L1 33441 NR_039933 100616356 NR_039933 ENSG00000265694 MIR4774 - microRNA 4774 ncRNA 261-181 chr2 43325706 43325924 + 2 NA intron (NR_144316, intron 29 of 36) intron (NR_144316, intron 29 of 36) 98604 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 790-28 chr2 195108601 195109019 + 2 NA Intergenic Intergenic 378215 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 207-56 chr11 84191301 84191450 + 2 NA intron (NM_001142700, intron 1 of 19) intron (NM_001142700, intron 1 of 19) 81905 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 257-48 chr10 85174593 85174775 + 2 NA Intergenic Intergenic 24221 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 310-527 chr8 113095700 113095963 + 2 NA intron (NM_001363185, intron 5 of 66) MER2|DNA|TcMar-Tigger 281321 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 324-509 chr7 110134191 110134368 + 2 NA Intergenic Intergenic -174066 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 310-482 chr7 63991005 63991245 + 2 NA Intergenic Intergenic -7681 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 205-89 chr14 66435252 66435448 + 2 NA Intergenic L1MB4|LINE|L1 -51021 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 328-167 chr15 26124971 26125261 + 2 NA intron (NR_038852, intron 2 of 5) intron (NR_038852, intron 2 of 5) 9303 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 482-281 chr8 123966658 123967074 + 2 NA intron (NM_001039112, intron 5 of 40) AluY|SINE|Alu 73916 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 307-57 chr10 60189941 60190146 + 2 NA intron (NM_001204403, intron 17 of 43) intron (NM_001204403, intron 17 of 43) -49027 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 485-84 chr14 83590403 83590779 + 2 NA Intergenic Intergenic 947959 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 304-103 chr12 22156457 22156733 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 110377 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 151-31 chr17 52040935 52041067 + 2 NA intron (NM_001082533, intron 3 of 9) L1ME1|LINE|L1 117713 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 337-139 chr13 80816569 80816738 + 2 NA Intergenic L1MEc|LINE|L1 -201738 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 222-153 chr18 74106402 74106555 + 2 NA intron (NM_001142958, intron 8 of 9) intron (NM_001142958, intron 8 of 9) 41356 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 337-544 chr8 106987990 106988235 + 2 NA Intergenic Intergenic -217868 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 676-112 chr8 132684770 132685269 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie -9474 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 226-23 chr1 213135434 213135569 + 2 NA intron (NM_001136138, intron 5 of 13) intron (NM_001136138, intron 5 of 13) 84260 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 214-55 chr11 5044514 5044639 + 2 NA Intergenic Intergenic -1950 NM_001001916 119679 Hs.553558 NM_001001916 ENSG00000205495 OR52J3 OR11-32 olfactory receptor family 52 subfamily J member 3 protein-coding 330-188 chr16 50446620 50446819 + 2 NA Intergenic MIRb|SINE|MIR -51586 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 219-381 chr9 77554926 77555130 + 2 NA intron (NM_004297, intron 1 of 6) L1ME3G|LINE|L1 93294 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 689-43 chr2 30965626 30966151 + 2 NA intron (NM_024572, intron 3 of 14) intron (NM_024572, intron 3 of 14) -158442 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 310-544 chr8 138225353 138225532 + 2 NA intron (NM_015912, intron 7 of 19) MLT1A|LTR|ERVL-MaLR -141897 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 655-27 chr12 34441674 34442192 + 2 NA Intergenic ALR/Alpha|Satellite|centr 419437 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 346-49 chr10 71190790 71191043 + 2 NA Intergenic Intergenic -21654 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 403-49 chr11 40908569 40908946 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 550879 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 316-48 chr1 245161734 245161929 + 2 NA intron (NM_018012, intron 2 of 14) intron (NM_018012, intron 2 of 14) 6846 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 506-180 chr3 57026145 57026570 + 2 NA intron (NM_001128615, intron 2 of 12) AluJb|SINE|Alu -34307 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 396-228 chr3 110652120 110652485 + 2 NA Intergenic Intergenic 417657 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 490-105 chr16 49152432 49152828 + 2 NA Intergenic L1MA9|LINE|L1 129208 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 368-334 chr4 70526613 70526899 + 2 NA intron (NM_212557, intron 5 of 8) intron (NM_212557, intron 5 of 8) 8187 NM_212557 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 459-47 chr11 20788020 20788421 + 2 NA intron (NM_001288714, intron 3 of 18) L1MB8|LINE|L1 118634 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 252-411 chr8 24853110 24853250 + 2 NA Intergenic L1MEf|LINE|L1 -60581 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 219-245 chr3 172331621 172331784 + 2 NA intron (NM_001135095, intron 13 of 25) L2a|LINE|L2 116754 NM_198407 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 179-40 chr19 36949989 36950103 + 2 NA exon (NM_001204837, exon 5 of 5) exon (NM_001204837, exon 5 of 5) 33714 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 367-171 chr17 69006763 69007088 + 2 NA intron (NR_126414, intron 1 of 3) L2|LINE|L2 2211 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 241-8 chr1 59305673 59305860 + 2 NA intron (NM_018291, intron 1 of 15) L1MEc|LINE|L1 -4266 NM_001244714 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 388-230 chr3 88672508 88672777 + 2 NA Intergenic Intergenic 334186 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 536-227 chr8 58523133 58523653 + 2 NA Intergenic L1ME3Cz|LINE|L1 -23230 NM_000780 1581 Hs.1644 NM_000780 ENSG00000167910 CYP7A1 CP7A|CYP7|CYPVII cytochrome P450 family 7 subfamily A member 1 protein-coding 142-69 chr6 132187266 132187393 + 2 NA Intergenic L1ME3E|LINE|L1 53351 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 129-19 chr14 61692046 61692120 + 2 NA intron (NR_047116, intron 1 of 1) AluJr|SINE|Alu -3430 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 602-80 chr21 26539407 26539833 + 2 NA intron (NR_135515, intron 2 of 3) HAL1|LINE|L1 33666 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 271-317 chr4 80172102 80172296 + 2 NA Intergenic LTR8B|LTR|ERV1 -13071 NM_020226 56978 Hs.373642 NM_020226 ENSG00000152784 PRDM8 EPM10|KMT8D|PFM5 PR/SET domain 8 protein-coding 401-176 chr2 192931800 192932119 + 2 NA Intergenic Intergenic 182114 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 468-169 chr2 187386325 187386737 + 2 NA intron (NM_001369435, intron 4 of 15) intron (NM_001369435, intron 4 of 15) 61721 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 487-41 chr10 76927220 76927547 + 2 NA intron (NM_001271519, intron 23 of 28) intron (NM_001271519, intron 23 of 28) 39339 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 326-374 chr4 61488428 61488733 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 286408 NM_001371342 267-353 chr5 143962361 143962569 + 2 NA Intergenic Intergenic 150304 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 318-368 chr3 108898275 108898515 + 2 NA Intergenic L1MC4|LINE|L1 55451 NM_001363884 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 357-268 chr3 45152786 45153138 + 2 NA Intergenic Intergenic -6540 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 590-116 chr4 15926513 15926901 + 2 NA Intergenic L1MC5|LINE|L1 12033 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 233-249 chr3 192681644 192681831 + 2 NA intron (NM_004113, intron 2 of 5) MIR1_Amn|SINE|MIR 45804 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 162-117 chr7 15068565 15068657 + 2 NA Intergenic LTR37-int|LTR|ERV1 -93753 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 304-448 chr5 170123647 170123904 + 2 NA Intergenic Intergenic 17878 NM_012188 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 320-254 chr2 28501521 28501726 + 2 NA intron (NM_001170585, intron 1 of 56) L1MC5a|LINE|L1 5552 NM_001170585 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 482-135 chr2 176047999 176048409 + 2 NA Intergenic AluJb|SINE|Alu 35758 NM_001080458 344191 Hs.452341 NM_001080458 ENSG00000174279 EVX2 EVX-2 even-skipped homeobox 2 protein-coding 331-69 chr10 110881448 110881664 + 2 NA intron (NM_001199492, intron 3 of 11) intron (NM_001199492, intron 3 of 11) 9628 NM_014456 27250 Hs.711490 NM_014456 ENSG00000150593 PDCD4 H731 programmed cell death 4 protein-coding 415-223 chr5 143696986 143697249 + 2 NA Intergenic Intergenic 17257 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 209-5 chr1 79998048 79998216 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -537623 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 133-59 chr4 184046888 184046991 + 2 NA Intergenic L1MC4|LINE|L1 141632 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 315-135 chr14 63192987 63193291 + 2 NA Intergenic Intergenic -11304 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 835-12 chr12 34633905 34634497 + 2 NA Intergenic ALR/Alpha|Satellite|centr 611705 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 299-55 chr10 74781818 74782087 + 2 NA Intergenic AluSq2|SINE|Alu -43303 NM_001370139 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 308-134 chr14 25914294 25914526 + 2 NA Intergenic Intergenic 639020 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 297-435 chr7 48968946 48969099 + 2 NA Intergenic L1M5|LINE|L1 44475 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 415-143 chr2 199233361 199233691 + 2 NA Intergenic L1MC2|LINE|L1 224413 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 310-187 chr17 65326710 65326950 + 2 NA Intergenic Intergenic -130711 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 417-2 chr1 43649931 43650250 + 2 NA promoter-TSS (NM_014663) promoter-TSS (NM_014663) -59 NM_014663 9682 Hs.155983 NM_014663 ENSG00000066135 KDM4A JHDM3A|JMJD2|JMJD2A|TDRD14A lysine demethylase 4A protein-coding 286-301 chr3 191913209 191913419 + 2 NA Intergenic MIRc|SINE|MIR -325316 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 268-199 chr2 98150930 98151106 + 2 NA intron (NM_001345864, intron 1 of 21) L1MEc|LINE|L1 1485 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 288-22 chr1 158715078 158715354 + 2 NA Intergenic Intergenic 2899 NM_001005327 391114 Hs.554488 NM_001005327 ENSG00000203757 OR6K3 OR1-18 olfactory receptor family 6 subfamily K member 3 protein-coding 250-181 chr18 79836234 79836445 + 2 NA Intergenic L1ME3G|LINE|L1 -27329 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 381-92 chr13 33741463 33741779 + 2 NA Intergenic L2b|LINE|L2 -64827 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 169-2 chr1 68777684 68777818 + 2 NA Intergenic Intergenic -278147 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 274-24 chr1 218615528 218615678 + 2 NA intron (NR_031644, intron 3 of 6) MER34A|LTR|ERV1 105508 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 849-5 chr11 36867388 36868163 + 2 NA Intergenic Intergenic -269496 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 181-75 chr2 145018334 145018450 + 2 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 350425 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 353-258 chr2 146081194 146081526 + 2 NA Intergenic L1M5|LINE|L1 -505697 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 194-200 chr7 50521380 50521545 + 2 NA intron (NM_001242889, intron 4 of 12) L1MC2|LINE|L1 -10297 NR_033845 100129427 Hs.680434 NR_033845 ENSG00000226122 DDC-AS1 - DDC antisense RNA 1 ncRNA 401-353 chrX 67794963 67795203 + 2 NA Intergenic Intergenic 250460 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 341-135 chr13 57444616 57444821 + 2 NA Intergenic Intergenic -187026 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 391-228 chr3 44249851 44250088 + 2 NA intron (NM_001145030, intron 2 of 19) intron (NM_001145030, intron 2 of 19) 8083 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 521-84 chr14 84887754 84888115 + 2 NA Intergenic Intergenic -383998 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 251-96 chr14 62170547 62170693 + 2 NA Intergenic Intergenic -30647 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 295-169 chr16 71351865 71352146 + 2 NA Intergenic Intergenic -6708 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 284-246 chr21 30117113 30117274 + 2 NA Intergenic Intergenic 49612 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 189-121 chr22 34966510 34966672 + 2 NA intron (NR_138042, intron 1 of 4) MLT1H|LTR|ERVL-MaLR 31325 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 358-481 chr8 96710996 96711209 + 2 NA intron (NM_016134, intron 1 of 7) L1PB3|LINE|L1 65860 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 498-233 chr6 74229153 74229515 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 159883 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 190-37 chr12 56658895 56659049 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -12988 NM_001686 506 Hs.406510 NM_001686 ENSG00000110955 ATP5F1B ATP5B|ATPMB|ATPSB|HEL-S-271 ATP synthase F1 subunit beta protein-coding 441-62 chr12 119424564 119424798 + 2 NA intron (NM_178499, intron 1 of 13) intron (NM_178499, intron 1 of 13) 89952 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 303-470 chr8 126129753 126129946 + 2 NA Intergenic L1MCa|LINE|L1 -178652 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 333-625 chrX 97855255 97855424 + 2 NA Intergenic Intergenic -290804 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 217-382 chr8 137575752 137575865 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -162220 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 283-145 chr15 49706768 49706966 + 2 NA Intergenic Intergenic 85819 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 393-19 chr1 163841512 163841776 + 2 NA Intergenic Intergenic -418453 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 298-4 chr1 60397367 60397528 + 2 NA Intergenic Intergenic 225238 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 243-310 chr4 4614937 4615132 + 2 NA intron (NR_037888, intron 2 of 5) intron (NR_037888, intron 2 of 5) -49292 NR_145783 109623454 NR_145783 SNORD162 - small nucleolar RNA, C/D box 162 snoRNA 262-338 chr5 20955816 20956068 + 2 NA Intergenic L1M4a2|LINE|L1 -340407 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 240-10 chr1 66613663 66613878 + 2 NA intron (NM_001350218, intron 1 of 22) intron (NM_001350218, intron 1 of 22) -14670 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 362-451 chr8 132861164 132861347 + 2 NA Intergenic L1MDa|LINE|L1 -5703 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 513-121 chr2 5263836 5264250 + 2 NA Intergenic Intergenic 427075 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 203-45 chr12 92756651 92756792 + 2 NA intron (NM_001004330, intron 8 of 11) intron (NM_001004330, intron 8 of 11) 20232 NM_001004330 440107 Hs.591013 NM_001004330 ENSG00000187510 PLEKHG7 - pleckstrin homology and RhoGEF domain containing G7 protein-coding 225-93 chr14 68155599 68155744 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 332079 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 351-482 chr8 73668632 73668956 + 2 NA intron (NM_001164383, intron 1 of 9) LTR83|LTR|ERVL 78046 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 283-142 chr14 86743731 86743912 + 2 NA Intergenic L1MA3|LINE|L1 -161957 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 547-15 chr10 32029342 32029831 + 2 NA intron (NM_004521, intron 14 of 25) intron (NM_004521, intron 14 of 25) 26839 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 659-131 chrX 35797281 35797806 + 2 NA promoter-TSS (NM_001099921) promoter-TSS (NM_001099921) -799 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 430-198 chr3 109448143 109448474 + 2 NA intron (NR_109841, intron 2 of 4) L1M1|LINE|L1 38318 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 438-301 chr9 138035886 138036268 + 2 NA intron (NM_001243812, intron 20 of 45) L1MEd|LINE|L1 8994 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 251-377 chr7 71046690 71046894 + 2 NA Intergenic Intergenic -85352 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 525-267 chr8 113828562 113829022 + 2 NA Intergenic AluSx1|SINE|Alu -391853 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 580-56 chr15 67688320 67688730 + 2 NA intron (NM_001206804, intron 13 of 21) intron (NM_001206804, intron 13 of 21) -136984 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 286-31 chr10 17002499 17002730 + 2 NA intron (NM_001081, intron 28 of 66) intron (NM_001081, intron 28 of 66) 127203 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 205-74 chr13 92872735 92872877 + 2 NA Intergenic Intergenic -151192 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 355-20 chr1 175350961 175351171 + 2 NA intron (NM_003285, intron 18 of 22) intron (NM_003285, intron 18 of 22) -158079 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 385-162 chr2 8649366 8649652 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 32352 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 398-276 chr5 105797095 105797399 + 2 NA Intergenic Intergenic 697773 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 406-159 chr2 224083965 224084235 + 2 NA Intergenic Intergenic -44781 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 514-199 chr4 52268087 52268438 + 2 NA Intergenic L1MC5a|LINE|L1 216958 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 241-73 chr11 111024100 111024297 + 2 NA Intergenic Intergenic 73120 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 512-92 chr16 10848353 10848695 + 2 NA Intergenic L2|LINE|L2 -28674 NM_000246 4261 Hs.592051 NM_000246 ENSG00000179583 CIITA C2TA|CIITAIV|MHC2TA|NLRA class II major histocompatibility complex transactivator protein-coding 348-76 chr11 24413002 24413208 + 2 NA Intergenic Intergenic -83948 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 352-66 chr10 118002438 118002630 + 2 NA Intergenic L1MB1|LINE|L1 -44287 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 406-22 chr1 208622071 208622304 + 2 NA Intergenic L1MA1|LINE|L1 -106501 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 249-64 chr10 123000229 123000462 + 2 NA intron (NR_073478, intron 1 of 3) L1ME3A|LINE|L1 8342 NM_001271840 64376 Hs.501289 NM_001271840 ENSG00000095574 IKZF5 PEGASUS|ZNFN1A5 IKAROS family zinc finger 5 protein-coding 526-109 chr19 33990176 33990593 + 2 NA Intergenic L1MEd|LINE|L1 -182120 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 184-133 chr5 36789909 36790086 + 2 NA Intergenic L1MB3|LINE|L1 86697 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 235-11 chr1 90141124 90141308 + 2 NA Intergenic L1MB3|LINE|L1 146106 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 233-259 chr4 53609066 53609244 + 2 NA Intergenic L1PREC2|LINE|L1 16199 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 320-432 chr5 37793088 37793341 + 2 NA Intergenic Intergenic 41608 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 198-176 chr4 22234037 22234192 + 2 NA Intergenic LTR16A|LTR|ERVL 105552 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 817-45 chr6 61859522 61860040 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 285651 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 145-78 chr7 84908974 84909081 + 2 NA Intergenic (AATTCAT)n|Simple_repeat|Simple_repeat 212904 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 268-423 chr8 136072422 136072626 + 2 NA Intergenic Intergenic -458274 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 299-321 chr4 59163097 59163341 + 2 NA Intergenic L1PA16|LINE|L1 149646 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 256-4 chr1 34681110 34681355 + 2 NA Intergenic Intergenic -11538 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 207-147 chr2 124307885 124308060 + 2 NA intron (NM_130773, intron 3 of 23) MER5A1|DNA|hAT-Charlie 282685 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 475-10 chr1 153381807 153382121 + 2 NA Intergenic L1PA17|LINE|L1 -6343 NM_005621 6283 Hs.19413 NM_005621 ENSG00000163221 S100A12 CAAF1|CAGC|CGRP|ENRAGE|MRP-6|MRP6|p6 S100 calcium binding protein A12 protein-coding 211-168 chr20 50550641 50550781 + 2 NA intron (NM_001278618, intron 1 of 8) L2a|LINE|L2 -35075 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 440-202 chr5 91761088 91761515 + 2 NA Intergenic L1MB1|LINE|L1 -377984 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 316-412 chr4 157272777 157273015 + 2 NA intron (NM_001083620, intron 2 of 15) L1MC1|LINE|L1 52168 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 489-33 chr10 97065038 97065453 + 2 NA intron (NM_003061, intron 5 of 36) MER117|DNA|hAT-Charlie -37511 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 305-359 chr3 105325478 105325646 + 2 NA Intergenic Intergenic -41151 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 168-4 chr1 118818029 118818126 + 2 NA Intergenic Intergenic 170266 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 181-132 chr5 145490563 145490707 + 2 NA Intergenic Intergenic 344707 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 340-285 chr2 142677668 142677849 + 2 NA Intergenic Intergenic -199906 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 464-275 chrX 145300187 145300598 + 2 NA Intergenic L1P4a|LINE|L1 52889 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 288-99 chr13 81698209 81698364 + 2 NA Intergenic LTR27D|LTR|ERV1 -471303 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 333-496 chr6 33963479 33963753 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 36435 NR_031681 100302123 NR_031681 ENSG00000221697 MIR1275 MIRN1275|hsa-mir-1275|mir-1275 microRNA 1275 ncRNA 298-426 chr7 35523269 35523473 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 171764 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 450-273 chr7 11562948 11563350 + 2 NA intron (NM_015204, intron 4 of 26) intron (NM_015204, intron 4 of 26) 269049 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 276-317 chr3 192429706 192429966 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) -20787 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 406-4 chr1 50282410 50282706 + 2 NA Intergenic Intergenic 140885 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 186-57 chr15 97170002 97170126 + 2 NA Intergenic Intergenic 351747 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 359-366 chr4 87937650 87937837 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -37907 NM_000582 6696 Hs.313 NM_000582 ENSG00000118785 SPP1 BNSP|BSPI|ETA-1|OPN secreted phosphoprotein 1 protein-coding 579-56 chr17 72828122 72828578 + 2 NA intron (NM_001352692, intron 6 of 9) MLT1D|LTR|ERVL-MaLR -187878 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 133-43 chr21 29183286 29183400 + 2 NA Intergenic LTR33|LTR|ERVL -10151 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 264-247 chr20 58218432 58218618 + 2 NA exon (NM_001304369, exon 4 of 4) exon (NM_001304369, exon 4 of 4) 10128 NM_001304369 140731 Hs.266571 NM_080674 ENSG00000124227 ANKRD60 C20orf86|bA196N14.3 ankyrin repeat domain 60 protein-coding 291-475 chr8 136155303 136155458 + 2 NA Intergenic Intergenic -375418 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 243-408 chr7 12265880 12266058 + 2 NA Intergenic Intergenic 54675 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 504-162 chr3 26632628 26632978 + 2 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) 8136 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 299-440 chr8 36084843 36085065 + 2 NA Intergenic Intergenic -374634 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 404-132 chr17 72535100 72535325 + 2 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 57592 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 965-20 chr7 51916003 51916856 + 2 NA Intergenic Intergenic -523173 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 481-254 chr5 118171427 118171817 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -110952 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 210-274 chr7 102010662 102010845 + 2 NA intron (NM_001202544, intron 2 of 21) intron (NM_001202544, intron 2 of 21) 193127 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 705-34 chr15 71999157 71999770 + 2 NA intron (NM_006901, intron 9 of 41) L2|LINE|L2 -114795 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 232-382 chr8 122265777 122265942 + 2 NA Intergenic Intergenic 302785 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 175-130 chr5 62195679 62195806 + 2 NA Intergenic Intergenic -110420 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 574-15 chr10 93104391 93104789 + 2 NA Intergenic L1ME1|LINE|L1 30697 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 215-153 chr2 106871596 106871778 + 2 NA intron (NM_032528, intron 1 of 5) Tigger3b|DNA|TcMar-Tigger 14341 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 595-57 chr15 92574643 92575025 + 2 NA Intergenic Intergenic -2571 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 366-472 chr9 106847068 106847363 + 2 NA Intergenic Intergenic -15951 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 699-34 chr14 104023597 104024007 + 2 NA intron (NM_153046, intron 24 of 35) intron (NM_153046, intron 24 of 35) -61898 NM_001080464 374569 Hs.146239 NM_001080464 ENSG00000166183 ASPG C14orf76|GPA/WT|LYSOLP asparaginase protein-coding 400-275 chr5 22396299 22396531 + 2 NA intron (NM_001364104, intron 2 of 13) LTR45C|LTR|ERV1 -182565 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 547-87 chr19 7325049 7325567 + 2 NA Intergenic L1ME1|LINE|L1 -23629 NM_001367823 23370 Hs.465761 NM_015318 ENSG00000104880 ARHGEF18 P114-RhoGEF|RP78|SA-RhoGEF|p114RhoGEF Rho/Rac guanine nucleotide exchange factor 18 protein-coding 127-40 chr18 70532432 70532536 + 2 NA Intergenic L1MB3|LINE|L1 118470 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 168-112 chr8 88272609 88272704 + 2 NA intron (NM_005941, intron 1 of 9) L3|LINE|CR1 54827 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 305-401 chr4 109277360 109277546 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 25205 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 417-188 chr3 188012217 188012478 + 2 NA Intergenic L1MD1|LINE|L1 -35940 NR_135537 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 318-258 chr2 49391961 49392183 + 2 NA Intergenic L1MA6|LINE|L1 -237545 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 469-247 chr6 87911393 87911699 + 2 NA intron (NR_110869, intron 4 of 4) intron (NR_110869, intron 4 of 4) 126686 NR_110869 101928911 Hs.571178 NR_110869 LOC101928911 - uncharacterized LOC101928911 ncRNA 245-243 chr3 193437579 193437757 + 2 NA intron (NM_032279, intron 23 of 29) MIRc|SINE|MIR -58915 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 377-61 chr11 13931880 13932133 + 2 NA Intergenic MIRb|SINE|MIR -7143 NR_135052 101928132 Hs.568970 NR_135052 ENSG00000254438 LINC02683 - long intergenic non-protein coding RNA 2683 ncRNA 237-64 chr11 125809512 125809660 + 2 NA Intergenic L1MEg|LINE|L1 21459 NM_001129883 100169851 Hs.131278 NM_001129883 ENSG00000236027 PATE3 HEL-127|PATE-DJ prostate and testis expressed 3 protein-coding 217-251 chr4 39225677 39225820 + 2 NA intron (NM_025132, intron 15 of 36) intron (NM_025132, intron 15 of 36) 43219 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 643-22 chr12 15255611 15256078 + 2 NA Intergenic Intergenic -34427 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 433-35 chr11 15835778 15836078 + 2 NA Intergenic Intergenic 133693 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 205-266 chr7 123630901 123631074 + 2 NA intron (NM_080928, intron 9 of 9) intron (NM_080928, intron 9 of 9) -6030 NR_111922 102724555 Hs.83916 NR_111922 ENSG00000230442 LOC102724555 - uncharacterized LOC102724555 ncRNA 421-23 chr10 10370218 10370472 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger 92004 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 597-111 chr5 166746797 166747196 + 2 NA Intergenic AluSx1|SINE|Alu 179374 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 423-148 chr2 236794034 236794382 + 2 NA Intergenic Intergenic 224383 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 481-140 chr2 54463256 54463669 + 2 NA intron (NM_003128, intron 1 of 35) MIR|SINE|MIR 7135 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 598-75 chr2 154156718 154157083 + 2 NA intron (NM_052917, intron 4 of 12) intron (NM_052917, intron 4 of 12) 212506 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 373-177 chr19 53649619 53649860 + 2 NA Intergenic AluSp|SINE|Alu -16934 NR_030181 574459 NR_030181 ENSG00000207644 MIR512-2 MIRN512-2|mir-512-2 microRNA 512-2 ncRNA 402-51 chr11 81222465 81222803 + 2 NA Intergenic L1P3b|LINE|L1 -459831 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 157-94 chr4 109403072 109403174 + 2 NA Intergenic L2|LINE|L2 -30592 NM_001318086 10427 Hs.292472 NM_006323 ENSG00000138802 SEC24B SEC24 SEC24 homolog B, COPII coat complex component protein-coding 175-72 chr19 43828874 43829000 + 2 NA intron (NM_001297752, intron 3 of 5) intron (NM_001297752, intron 3 of 5) 1616 NM_181845 284349 Hs.652513 NM_181845 ENSG00000167637 ZNF283 HZF19|HZF41 zinc finger protein 283 protein-coding 241-15 chr1 112246853 112247063 + 2 NA Intergenic MIR|SINE|MIR -149256 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 228-268 chr5 55986807 55986982 + 2 NA intron (NR_157112, intron 1 of 17) AluJb|SINE|Alu 8069 NM_001364278 3572 Hs.532082 NM_002184 ENSG00000134352 IL6ST CD130|CDW130|GP130|IL-6RB interleukin 6 signal transducer protein-coding 202-267 chr9 26227783 26227972 + 2 NA Intergenic Intergenic 161202 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 186-12 chr1 231953967 231954138 + 2 NA intron (NM_001164541, intron 9 of 9) intron (NM_001164541, intron 9 of 9) 28218 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 337-288 chr2 186263299 186263536 + 2 NA Intergenic AluJr4|SINE|Alu -177100 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 233-294 chr5 40361586 40361756 + 2 NA Intergenic Intergenic 309380 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 745-3 chr10 11064524 11065182 + 2 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) 40635 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 320-446 chr5 74364827 74365101 + 2 NA Intergenic MIRc|SINE|MIR 42478 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 288-447 chr8 107666793 107667044 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -169000 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 114-22 chr16 47374864 47374943 + 2 NA intron (NM_030790, intron 7 of 17) intron (NM_030790, intron 7 of 17) 86160 NM_030790 81533 Hs.42217 NM_030790 ENSG00000129636 ITFG1 2310047C21Rik|CDA08|LNKN-1|TIP integrin alpha FG-GAP repeat containing 1 protein-coding 262-360 chr6 37812048 37812237 + 2 NA Intergenic Intergenic -7585 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 429-296 chr8 73319803 73320127 + 2 NA intron (NM_172037, intron 3 of 5) intron (NM_172037, intron 3 of 5) 25363 NM_172037 157506 Hs.244940 NM_172037 ENSG00000121039 RDH10 SDR16C4 retinol dehydrogenase 10 protein-coding 519-16 chr1 239926058 239926573 + 2 NA Intergenic Intergenic -26443 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 707-58 chr2 228739887 228740329 + 2 NA Intergenic L1MA4|LINE|L1 -128713 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 593-71 chr2 46807601 46808073 + 2 NA Intergenic AluJb|SINE|Alu -8831 NR_034099 388948 Hs.728895 NR_034099 ENSG00000222005 LINC01118 - long intergenic non-protein coding RNA 1118 ncRNA 183-155 chr8 34452868 34453003 + 2 NA Intergenic Intergenic -330986 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 203-23 chr10 34143583 34143747 + 2 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -370985 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 231-108 chr15 87249271 87249438 + 2 NA Intergenic L1PA16|LINE|L1 -260928 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 170-29 chr11 94709220 94709346 + 2 NA intron (NR_135096, intron 1 of 6) MLT1H1|LTR|ERVL-MaLR 31072 NR_135094 105369438 Hs.568921 NR_135093 ENSG00000255929 LOC105369438 - uncharacterized LOC105369438 ncRNA 289-160 chr15 99082146 99082315 + 2 NA Intergenic L1MB7|LINE|L1 -22850 NM_145728 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 224-182 chr21 30852957 30853118 + 2 NA Intergenic Intergenic -23278 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 286-205 chr2 59868645 59868918 + 2 NA Intergenic Intergenic 514255 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 349-55 chr10 39300292 39300540 + 2 NA Intergenic ALR/Alpha|Satellite|centr 603820 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 532-50 chr12 72867147 72867655 + 2 NA Intergenic Intergenic -291789 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 251-164 chr2 34045527 34045749 + 2 NA intron (NR_126403, intron 4 of 5) MamGypsy2-LTR|LTR|Gypsy -21588 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 353-525 chr8 78457901 78458170 + 2 NA Intergenic L1MA6|LINE|L1 -58305 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 286-141 chr15 95648973 95649251 + 2 NA Intergenic Intergenic 216019 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 405-318 chr8 71577801 71578082 + 2 NA Intergenic L1ME1|LINE|L1 -29847 NM_001370336 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 311-480 chr7 113873136 113873414 + 2 NA Intergenic Intergenic 45734 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 244-82 chr13 101220029 101220254 + 2 NA intron (NM_001350749, intron 13 of 43) intron (NM_001350749, intron 13 of 43) 196367 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 456-207 chr3 107710689 107711001 + 2 NA intron (NM_001276286, intron 4 of 16) intron (NM_001276286, intron 4 of 16) 167223 NR_015414 151658 Hs.159043 NR_015414 ENSG00000241469 LINC00635 - long intergenic non-protein coding RNA 635 ncRNA 240-116 chr13 22022180 22022363 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -144111 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 450-219 chr4 34181951 34182288 + 2 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 87628 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 221-279 chr7 41431712 41431871 + 2 NA Intergenic CR1_Mam|LINE|CR1 -262128 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 218-344 chr9 24072126 24072270 + 2 NA Intergenic Intergenic -221597 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 296-118 chr13 23244604 23244790 + 2 NA intron (NM_000231, intron 3 of 7) intron (NM_000231, intron 3 of 7) 63776 NM_000231 6445 Hs.37167 NM_000231 ENSG00000102683 SGCG 35DAG|A4|DAGA4|DMDA|DMDA1|LGMD2C|LGMDR5|MAM|SCARMD2|SCG3|gamma-SG sarcoglycan gamma protein-coding 276-275 chr22 35188690 35188853 + 2 NA intron (NR_126356, intron 2 of 5) L1PREC2|LINE|L1 42285 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 290-86 chr11 79296011 79296201 + 2 NA intron (NM_001098816, intron 2 of 33) intron (NM_001098816, intron 2 of 33) 106003 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 413-200 chr3 162751312 162751604 + 2 NA Intergenic Intergenic 551843 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 424-271 chr8 56007372 56007745 + 2 NA intron (NM_002350, intron 12 of 12) intron (NM_002350, intron 12 of 12) 66343 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 293-314 chr4 124721302 124721489 + 2 NA Intergenic Intergenic -8663 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 267-379 chr6 121818137 121818344 + 2 NA Intergenic Intergenic 382594 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 258-307 chr5 6080465 6080694 + 2 NA Intergenic Intergenic 256713 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 437-20 chr10 32269778 32270016 + 2 NA intron (NM_001272004, intron 13 of 13) intron (NM_001272004, intron 13 of 13) 77261 NM_025209 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 441-193 chr5 21665817 21666123 + 2 NA Intergenic L1M4b|LINE|L1 206490 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 186-51 chr14 68130838 68131013 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 307333 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 435-243 chr8 99442551 99442913 + 2 NA intron (NM_017890, intron 23 of 61) intron (NM_017890, intron 23 of 61) 93998 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 208-200 chr5 5687617 5687802 + 2 NA Intergenic MER33|DNA|hAT-Charlie 265032 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 391-383 chr9 134730381 134730713 + 2 NA intron (NM_001278074, intron 7 of 65) intron (NM_001278074, intron 7 of 65) -77704 NR_138049 414316 Hs.571561 NR_138049 ENSG00000204011 COL5A1-AS1 C9orf104|bA54A22.4 COL5A1 antisense RNA 1 ncRNA 361-286 chr3 80110279 80110553 + 2 NA Intergenic L1M5|LINE|L1 -342418 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 321-338 chr20 56570108 56570422 + 2 NA Intergenic Intergenic -7298 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 274-88 chr12 10458847 10459073 + 2 NA Intergenic L1PA14|LINE|L1 -4275 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 519-243 chr8 135898761 135899061 + 2 NA Intergenic AluJr|SINE|Alu 441455 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 657-65 chr3 95599975 95600444 + 2 NA Intergenic AluY|SINE|Alu 82984 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 191-204 chr8 25365870 25365989 + 2 NA intron (NM_024940, intron 30 of 51) L1ME4a|LINE|L1 -4417 NR_159962 105379331 NR_159962 LOC105379331 - uncharacterized LOC105379331 ncRNA 372-99 chr12 7046104 7046308 + 2 NA Intergenic L2b|LINE|L2 -14512 NM_001734 716 Hs.458355 NM_001734 ENSG00000182326 C1S EDSPD2 complement C1s protein-coding 648-118 chr5 141302836 141303291 + 2 NA exon (NM_031947, exon 1 of 1) exon (NM_031947, exon 1 of 1) 986 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 284-117 chr14 62611628 62611900 + 2 NA Intergenic L1ME1|LINE|L1 433694 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 545-81 chr15 96920272 96920761 + 2 NA Intergenic L1MB7|LINE|L1 137081 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 260-282 chr3 112754062 112754256 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -4840 NR_110017 101929694 Hs.385630 NR_110017 ENSG00000240893 LINC02042 - long intergenic non-protein coding RNA 2042 ncRNA 398-23 chr1 196050798 196051188 + 2 NA intron (NR_146895, intron 3 of 3) intron (NR_146895, intron 3 of 3) 37722 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 259-441 chrX 45954550 45954742 + 2 NA Intergenic L1M4|LINE|L1 -103156 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 470-155 chr20 39502077 39502523 + 2 NA Intergenic Intergenic -277552 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 415-255 chr7 46117753 46118003 + 2 NA Intergenic AluJo|SINE|Alu -196606 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 339-436 chr4 186451558 186451867 + 2 NA intron (NR_033901, intron 1 of 6) intron (NR_033901, intron 1 of 6) 49346 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 550-160 chr4 44750385 44750781 + 2 NA Intergenic L1PA10|LINE|L1 -23949 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 239-301 chr5 25182316 25182502 + 2 NA intron (NR_147006, intron 1 of 4) intron (NR_147006, intron 1 of 4) 8247 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 548-25 chr10 67200105 67200593 + 2 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 188083 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 814-30 chr19 51922563 51923085 + 2 NA Intergenic AluSz|SINE|Alu -4648 NM_024840 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 390-229 chr3 17759928 17760264 + 2 NA Intergenic L1ME4a|LINE|L1 17152 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 307-280 chr21 23344386 23344626 + 2 NA Intergenic Intergenic 40329 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 321-489 chr6 47069510 47069807 + 2 NA Intergenic Intergenic -27326 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 443-59 chr11 108379516 108379764 + 2 NA intron (NR_147053, intron 10 of 12) intron (NR_147053, intron 10 of 12) 87889 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 358-316 chr3 186377199 186377389 + 2 NA Intergenic MIRb|SINE|MIR -15060 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 408 chr1 12735293 12735601 + 2 NA Intergenic Intergenic -10753 NM_152290 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 712-98 chr8 139695444 139695933 + 2 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 7435 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 327-418 chr5 139651921 139652136 + 2 NA intron (NM_001317205, intron 1 of 2) intron (NM_001317205, intron 1 of 2) 1039 NM_001317205 51523 Hs.189119 NM_016463 ENSG00000171604 CXXC5 CF5|HSPC195|RINF|WID CXXC finger protein 5 protein-coding 262-131 chr14 80751338 80751538 + 2 NA intron (NM_152446, intron 18 of 24) intron (NM_152446, intron 18 of 24) 190300 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 353-431 chr5 174481263 174481502 + 2 NA intron (NR_125806, intron 2 of 5) L1MA9|LINE|L1 145028 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 624-19 chr10 123061429 123061857 + 2 NA Intergenic FRAM|SINE|Alu 52637 NM_001330174 36 Hs.81934 NM_001609 ENSG00000196177 ACADSB 2-MEBCAD|ACAD7|SBCAD acyl-CoA dehydrogenase short/branched chain protein-coding 341-57 chr10 25661091 25661315 + 2 NA intron (NR_108067, intron 2 of 4) L1MA2|LINE|L1 9491 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 202-121 chr2 81371842 81371971 + 2 NA Intergenic Intergenic 95040 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 254-16 chr1 173376353 173376531 + 2 NA intron (NR_037845, intron 2 of 2) L1PA7|LINE|L1 84920 NR_125960 101928673 Hs.674889 NR_125960 ENSG00000203739 LOC101928673 - uncharacterized LOC101928673 ncRNA 133-82 chr8 122029596 122029705 + 2 NA Intergenic Intergenic -388210 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 477-278 chr8 77697006 77697286 + 2 NA Intergenic L1PA8A|LINE|L1 246449 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 138-31 chr17 68777119 68777219 + 2 NA Intergenic Intergenic 149015 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 248-28 chr10 18186845 18187084 + 2 NA intron (NM_201593, intron 2 of 13) L2c|LINE|L2 46540 NM_201593 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 726-84 chr9 12016566 12017200 + 2 NA Intergenic L1MC3|LINE|L1 -676502 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 216-63 chr11 96579457 96579649 + 2 NA Intergenic Intergenic 71128 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 609-127 chr7 51822768 51823229 + 2 NA Intergenic Intergenic -429742 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 549-12 chr1 161406348 161406811 + 2 NA Intergenic Intergenic -38696 NM_001013625 257177 Hs.534593 NM_001013625 ENSG00000188931 CFAP126 C1orf192|Flattop|Fltp cilia and flagella associated protein 126 protein-coding 303-117 chr14 30894399 30894671 + 2 NA 3' UTR (NM_014574, exon 16 of 16) 3' UTR (NM_014574, exon 16 of 16) -4727 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 383-258 chr3 137680900 137681115 + 2 NA Intergenic L1MA3|LINE|L1 -83308 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 617-106 chr5 52214862 52215304 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 207052 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 589-165 chr9 77493065 77493520 + 2 NA intron (NR_121184, intron 2 of 4) intron (NR_121184, intron 2 of 4) 45643 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 415-185 chr3 103849764 103850021 + 2 NA Intergenic AluSz|SINE|Alu -325776 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 460-55 chr11 112611161 112611541 + 2 NA Intergenic Intergenic -55549 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 229-20 chr1 201281329 201281546 + 2 NA Intergenic Intergenic -2015 NM_000299 5317 Hs.497350 NM_000299 ENSG00000081277 PKP1 B6P plakophilin 1 protein-coding 777-9 chr10 63816084 63816504 + 2 NA Intergenic L1PREC2|LINE|L1 -294404 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 310-465 chr6 156547457 156547762 + 2 NA Intergenic MamRep605|LTR?|LTR? 168859 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 195-14 chr1 192743816 192744004 + 2 NA Intergenic Intergenic 27582 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 575-32 chr11 96625104 96625454 + 2 NA Intergenic Intergenic 116854 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 191-14 chr1 115162878 115163040 + 2 NA Intergenic L1ME2|LINE|L1 -73456 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 211-200 chr3 167194256 167194433 + 2 NA Intergenic Intergenic 185939 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 390-411 chr9 28213356 28213613 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 505821 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 319-527 chr8 73998864 73999123 + 2 NA intron (NM_001195797, intron 1 of 3) AluSx1|SINE|Alu 7601 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 248-393 chr8 21246679 21246925 + 2 NA Intergenic Intergenic -51437 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 278-44 chr10 104075552 104075790 + 2 NA intron (NM_000494, intron 5 of 55) L2c|LINE|L2 10209 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 451-90 chr17 61662929 61663249 + 2 NA Intergenic Intergenic -71870 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 407-237 chr5 2600816 2601120 + 2 NA Intergenic L1MEf|LINE|L1 -111623 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 423-279 chr7 114005790 114006084 + 2 NA Intergenic L1MB8|LINE|L1 -80390 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 189 chr1 63753020 63753138 + 2 NA Intergenic Intergenic -20938 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 545-69 chr14 50834171 50834613 + 2 NA Intergenic Intergenic -3271 NM_016350 51199 Hs.310429 NM_016350 ENSG00000100503 NIN SCKL7 ninein protein-coding 504-229 chr6 142226018 142226495 + 2 NA Intergenic Intergenic -75663 NM_020455 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 206-288 chr9 108222193 108222332 + 2 NA Intergenic Intergenic 633724 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 356-356 chr4 42368054 42368249 + 2 NA intron (NR_134668, intron 1 of 1) FLAM_C|SINE|Alu 23117 NR_134668 105374428 Hs.245131 NR_134668 ENSG00000250781 LOC105374428 - uncharacterized LOC105374428 ncRNA 449-132 chr2 145995657 145995920 + 2 NA Intergenic L1M4b|LINE|L1 -591269 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 212-55 chr10 131565731 131565866 + 2 NA Intergenic HAL1M8|LINE|L1 224401 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 162-103 chr5 6905230 6905346 + 2 NA Intergenic Intergenic -77367 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 782-72 chr8 133677316 133677896 + 2 NA intron (NR_134462, intron 1 of 2) intron (NR_134462, intron 1 of 2) 6460 NR_134462 105375773 Hs.445172 NR_134462 LOC105375773 - uncharacterized LOC105375773 ncRNA 608-47 chr15 57960350 57960813 + 2 NA intron (NM_170696, intron 11 of 11) L2c|LINE|L2 53442 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 474-176 chr3 3945761 3946129 + 2 NA Intergenic L1MA1|LINE|L1 -145070 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 343-534 chr8 59631406 59631694 + 2 NA Intergenic Intergenic 512340 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 373-415 chr8 88317502 88317739 + 2 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 9863 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 301-344 chr5 10743546 10743811 + 2 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 17556 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 295-360 chr4 148569035 148569293 + 2 NA Intergenic HAL1ME|LINE|L1 -124466 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 210-130 chr2 76973240 76973380 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -12655 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 527-276 chr8 135812514 135812905 + 2 NA Intergenic Intergenic 355253 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 399-65 chr11 104731296 104731578 + 2 NA Intergenic Intergenic -122135 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 422-72 chr14 33371006 33371413 + 2 NA intron (NM_001165893, intron 3 of 10) intron (NM_001165893, intron 3 of 10) -337728 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 306-106 chr12 61770662 61770898 + 2 NA intron (NM_178539, intron 2 of 4) L1PB1|LINE|L1 422059 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 350-179 chr17 61435290 61435543 + 2 NA Intergenic L1MA9|LINE|L1 -17006 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 243-434 chr7 140575847 140576022 + 2 NA intron (NM_001318052, intron 4 of 18) AluSx|SINE|Alu 26608 NR_134477 27147 Hs.6385 NM_015689 ENSG00000146966 DENND2A FAM31D|KIAA1277 DENN domain containing 2A protein-coding 322-137 chr12 130247038 130247239 + 2 NA Intergenic Intergenic 84679 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 320-8 chr1 49932351 49932566 + 2 NA intron (NM_001323575, intron 1 of 12) L1MEc|LINE|L1 91496 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 244-184 chr2 206110685 206110868 + 2 NA Intergenic Intergenic 5796 NR_033248 100329109 Hs.356055 NR_033248 GCSHP3 - glycine cleavage system protein H pseudogene 3 pseudo 114-14 chr13 93786785 93786892 + 2 NA intron (NM_005708, intron 2 of 8) intron (NM_005708, intron 2 of 8) 71635 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 255-400 chr7 121748383 121748622 + 2 NA Intergenic Intergenic -124659 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 420-92 chr16 59094719 59095080 + 2 NA Intergenic MIR3|SINE|MIR -360583 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 294-224 chr2 107629773 107630062 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 100498 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 344-423 chr6 76804694 76804938 + 2 NA Intergenic HAL1|LINE|L1 -211193 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 347-23 chr1 175774530 175774861 + 2 NA Intergenic Intergenic -31100 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 622-94 chr4 43378641 43379129 + 2 NA Intergenic Intergenic 113658 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 444-290 chrX 65104486 65104773 + 2 NA Intergenic L1PA8|LINE|L1 -69888 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 328-92 chr11 97858247 97858518 + 2 NA Intergenic AluJo|SINE|Alu -1162567 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 256-430 chr8 114768978 114769172 + 2 NA Intergenic L1MA8|LINE|L1 898938 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 375-316 chr5 25133065 25133349 + 2 NA intron (NR_147006, intron 4 of 4) THE1B-int|LTR|ERVL-MaLR 57449 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 351-447 chr7 46264465 46264801 + 2 NA Intergenic Intergenic -343361 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 197-231 chr9 125081830 125082011 + 2 NA intron (NM_173690, intron 2 of 18) THE1B-int|LTR|ERVL-MaLR 61608 NM_173690 286205 Hs.59504 NM_173690 ENSG00000173611 SCAI C9orf126|NET40 suppressor of cancer cell invasion protein-coding 336-15 chr1 54003301 54003632 + 2 NA Intergenic LTR12C|LTR|ERV1 14720 NM_001276395 388633 Hs.439583 NM_001010978 ENSG00000203985 LDLRAD1 - low density lipoprotein receptor class A domain containing 1 protein-coding 506-49 chr10 130876609 130876975 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 85876 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 128-49 chr5 39962003 39962099 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie -90240 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 516-159 chr21 31853752 31854107 + 2 NA Intergenic Intergenic -19091 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 329-451 chr5 33354353 33354616 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -86212 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 292-314 chr4 44864764 44865042 + 2 NA Intergenic L1PA16|LINE|L1 -138269 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 734-53 chr4 80842142 80842789 + 2 NA intron (NM_001206997, intron 4 of 6) MIRb|SINE|MIR -188243 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 277-261 chr3 88783248 88783446 + 2 NA Intergenic L1MEg|LINE|L1 -324274 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 326-93 chr11 18156951 18157187 + 2 NA Intergenic Intergenic -15768 NM_054032 117196 Hs.632138 NM_054032 ENSG00000179817 MRGPRX4 GPCR|MRGX4|SNSR6 MAS related GPR family member X4 protein-coding 333-142 chr14 38484539 38484865 + 2 NA Intergenic L1MA3|LINE|L1 -228609 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 240-74 chr11 29262484 29262643 + 2 NA Intergenic Intergenic -331850 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 494-181 chr3 95776399 95776740 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -93376 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 405-161 chr2 160806765 160807071 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -313111 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 339-147 chr14 32049647 32049919 + 2 NA Intergenic Intergenic 26916 NR_027263 84837 Hs.496755 NM_032751 ARHGAP5-AS1 C14orf128 ARHGAP5 antisense RNA 1 (head to head) ncRNA 331-348 chr3 65515697 65516013 + 2 NA intron (NM_001365904, intron 2 of 24) intron (NM_001365904, intron 2 of 24) -377961 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 251-394 chr8 92656832 92657021 + 2 NA Intergenic Intergenic -1432 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 458-140 chr2 136537300 136537557 + 2 NA Intergenic Intergenic -228117 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 191-167 chr5 42213510 42213624 + 2 NA Intergenic L1MA1|LINE|L1 -38222 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 392-69 chr12 105006799 105007118 + 2 NA 3' UTR (NM_152318, exon 4 of 4) 3' UTR (NM_152318, exon 4 of 4) 20642 NM_152318 121053 Hs.295563 NM_152318 ENSG00000151131 C12orf45 - chromosome 12 open reading frame 45 protein-coding 176-72 chr21 24520315 24520484 + 2 NA intron (NR_135519, intron 1 of 2) L1MEc|LINE|L1 91659 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 276-194 chr18 1076347 1076546 + 2 NA Intergenic Intergenic -148453 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 151-48 chr22 26289300 26289411 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 119881 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 444-249 chr8 18503660 18503902 + 2 NA Intergenic L1ME3A|LINE|L1 112499 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 348-310 chr3 99476222 99476440 + 2 NA Intergenic L1MEg|LINE|L1 -162263 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 301-216 chr2 106662885 106663098 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 175627 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 281-76 chr11 119925252 119925518 + 2 NA Intergenic Intergenic 195802 NR_120587 102724301 Hs.637640 NR_120587 ENSG00000254854 LOC102724301 - uncharacterized LOC102724301 ncRNA 338-549 chr8 105214223 105214429 + 2 NA Intergenic Intergenic -104112 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 497-210 chr4 159295048 159295400 + 2 NA intron (NM_001351727, intron 1 of 24) intron (NM_001351727, intron 1 of 24) 27415 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 324-507 chr7 97341213 97341410 + 2 NA Intergenic L1ME4a|LINE|L1 224718 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 510-138 chr2 45562564 45562819 + 2 NA exon (NM_018079, exon 10 of 21) exon (NM_018079, exon 10 of 21) 48576 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 344-523 chr9 97742949 97743192 + 2 NA intron (NR_147055, intron 5 of 10) MER113A|DNA|hAT-Charlie -45661 NR_149093 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 406-276 chr7 62845299 62845539 + 2 NA Intergenic ALR/Alpha|Satellite|centr 458637 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 346-14 chr1 105931267 105931501 + 2 NA intron (NR_146609, intron 5 of 5) THE1B-int|LTR|ERVL-MaLR 96869 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 323-330 chr3 82595178 82595385 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 609139 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 279-194 chr2 129464963 129465223 + 2 NA Intergenic Intergenic -191202 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 383-98 chr13 79972132 79972458 + 2 NA Intergenic L1PA17|LINE|L1 -38782 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 531-107 chr2 44312324 44312681 + 2 NA intron (NM_000341, intron 7 of 9) intron (NM_000341, intron 7 of 9) 37022 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 400-188 chr2 239168470 239168728 + 2 NA intron (NM_006037, intron 5 of 26) intron (NM_006037, intron 5 of 26) 26858 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 276-463 chr8 125148760 125148932 + 2 NA intron (NM_001349486, intron 3 of 7) MERX|DNA|TcMar-Tigger 56986 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 437-137 chr2 95137414 95137660 + 2 NA Intergenic MER89-int|LTR|ERV1 -15510 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 334-540 chr8 92370347 92370675 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -267126 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 629-50 chr17 53252306 53252731 + 2 NA Intergenic Intergenic 267013 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 342-533 chr8 126831240 126831560 + 2 NA Intergenic Intergenic -181754 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 250-462 chr9 105816400 105816609 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 121963 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 210-192 chr4 53225732 53225895 + 2 NA intron (NM_152540, intron 4 of 8) MIR|SINE|MIR 140248 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 252-156 chr17 61133119 61133265 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 234512 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 361-344 chr5 4432208 4432506 + 2 NA Intergenic L1MA3|LINE|L1 -341124 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 334-544 chr8 103276932 103277221 + 2 NA intron (NR_148215, intron 2 of 3) intron (NR_148215, intron 2 of 3) -21418 NM_001164615 8323 Hs.591863 NM_003506 ENSG00000164930 FZD6 FZ-6|FZ6|HFZ6|NDNC10 frizzled class receptor 6 protein-coding 310-317 chr3 21474147 21474348 + 2 NA intron (NM_024697, intron 4 of 7) intron (NM_024697, intron 4 of 7) 68521 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 510-204 chr4 60694536 60694861 + 2 NA Intergenic Intergenic -227921 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 297-220 chr2 103992299 103992544 + 2 NA Intergenic Intergenic 415911 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 249-290 chr4 44902501 44902688 + 2 NA Intergenic Intergenic -175960 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 311-89 chr11 114005003 114005229 + 2 NA Intergenic L2|LINE|L2 27616 NM_001161772 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 183-39 chr12 118047484 118047626 + 2 NA intron (NM_001278557, intron 2 of 8) intron (NM_001278557, intron 2 of 8) 13656 NM_001278558 55884 Hs.506985 NM_018639 ENSG00000176871 WSB2 SBA2 WD repeat and SOCS box containing 2 protein-coding 347-191 chr19 36879315 36879578 + 2 NA 3' UTR (NM_003419, exon 3 of 3) 3' UTR (NM_003419, exon 3 of 3) 27795 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 162-70 chr20 14252806 14252936 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 84741 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 361-262 chr21 21679688 21679968 + 2 NA Intergenic L1PA8A|LINE|L1 57491 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 357-442 chr8 83869702 83869888 + 2 NA Intergenic MER52D|LTR|ERV1 -312992 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 344-243 chr2 88507985 88508216 + 2 NA Intergenic AluSx|SINE|Alu -16549 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 503-295 chr8 135820619 135821096 + 2 NA Intergenic Intergenic 363401 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 182-138 chr5 60260555 60260676 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) 112048 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 176 chr1 11495984 11496088 + 2 NA intron (NM_020780, intron 1 of 20) L1ME4a|LINE|L1 16881 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 277-313 chr5 30666938 30667116 + 2 NA Intergenic Intergenic -526659 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 160-123 chr8 112118876 112118993 + 2 NA Intergenic L1MB8|LINE|L1 -524559 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 347-451 chr7 8662474 8662693 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 228974 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 459-253 chr5 178578123 178578512 + 2 NA intron (NM_173465, intron 1 of 28) (CA)n|Simple_repeat|Simple_repeat 12076 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 616-126 chr4 151943320 151943779 + 2 NA Intergenic Intergenic -157204 NR_121628 100996286 Hs.322462 NR_121627 ENSG00000245954 LINC02273 - long intergenic non-protein coding RNA 2273 ncRNA 243-254 chr20 42639618 42639857 + 2 NA intron (NM_133170, intron 7 of 31) LTR84a|LTR|ERVL -45746 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 354-193 chr19 43868266 43868546 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 11730 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 269-364 chr6 145409189 145409370 + 2 NA Intergenic Intergenic 277598 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 214-88 chr12 130518867 130519043 + 2 NA intron (NM_001351226, intron 2 of 21) L1MEi|LINE|L1 109501 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 362-429 chr8 50891772 50892005 + 2 NA Intergenic Intergenic 727757 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 319-59 chr10 56418257 56418418 + 2 NA Intergenic Intergenic -57064 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 328-611 chr9 106264548 106264716 + 2 NA Intergenic Intergenic -336296 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 238-14 chr1 112164819 112165017 + 2 NA Intergenic Intergenic 174382 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 224-293 chr7 8898727 8898899 + 2 NA Intergenic L1PA17|LINE|L1 465204 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 371-46 chr10 54100724 54101008 + 2 NA intron (NM_001354411, intron 16 of 34) intron (NM_001354411, intron 16 of 34) -385364 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 115-16 chr16 77073244 77073354 + 2 NA Intergenic Intergenic -117891 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 463-316 chrX 45728709 45729083 + 2 NA Intergenic HAL1|LINE|L1 -2192 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 351-4 chr1 42243514 42243766 + 2 NA intron (NM_001198850, intron 4 of 12) L1MA4A|LINE|L1 -78895 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 192-219 chr9 72731441 72731572 + 2 NA intron (NM_138691, intron 8 of 23) L2b|LINE|L2 142603 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 466-212 chr5 133179124 133179377 + 2 NA Intergenic L1ME3Cz|LINE|L1 127237 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 344-184 chr17 33796692 33796898 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -263035 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 455-206 chr5 2531463 2531858 + 2 NA Intergenic Intergenic -180931 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 348-354 chr4 49000762 49001042 + 2 NA intron (NM_001286791, intron 6 of 15) intron (NM_001286791, intron 6 of 15) 14260 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 211-197 chr3 126232641 126232786 + 2 NA Intergenic L1MCa|LINE|L1 -51527 NM_001270364 10840 Hs.434435 NM_012190 ENSG00000144908 ALDH1L1 10-FTHFDH|10-fTHF|FDH|FTHFD aldehyde dehydrogenase 1 family member L1 protein-coding 241-401 chr8 115153021 115153245 + 2 NA Intergenic MIRb|SINE|MIR 514880 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 341-151 chr14 70377136 70377306 + 2 NA intron (NM_001202549, intron 2 of 4) intron (NM_001202549, intron 2 of 4) -17538 NM_016468 51241 Hs.709581 NM_016468 ENSG00000133983 COX16 C14orf112|HSPC203|hCOX16 cytochrome c oxidase assembly factor COX16 protein-coding 507-87 chr14 71208546 71208966 + 2 NA Intergenic L2a|LINE|L2 -111720 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 483-7 chr1 75325016 75325319 + 2 NA intron (NM_001320287, intron 4 of 24) L2c|LINE|L2 190779 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 271-355 chr5 109021490 109021672 + 2 NA intron (NR_146155, intron 13 of 19) intron (NR_146155, intron 13 of 19) 96975 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 262-148 chr15 93248664 93248869 + 2 NA Intergenic AluY|SINE|Alu 42700 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 587-113 chr4 31187042 31187428 + 2 NA intron (NR_125935, intron 2 of 4) L3|LINE|CR1 16091 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 640-136 chr8 106893964 106894404 + 2 NA Intergenic L1M5|LINE|L1 -123940 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 733-42 chr20 15880904 15881602 + 2 NA intron (NM_001351663, intron 9 of 17) LTR8B|LTR|ERV1 42061 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 324-303 chr20 744756 745041 + 2 NA Intergenic L1M4b|LINE|L1 23602 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 381-106 chr14 53624117 53624459 + 2 NA Intergenic Intergenic 324196 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 320-307 chr20 37452653 37452891 + 2 NA Intergenic Intergenic 67531 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 273-27 chr1 183604875 183605132 + 2 NA Intergenic Intergenic -14089 NM_001127651 4688 Hs.587558 NM_000433 ENSG00000116701 NCF2 NCF-2|NOXA2|P67-PHOX|P67PHOX neutrophil cytosolic factor 2 protein-coding 341-470 chr6 137679796 137679990 + 2 NA Intergenic L1MC4|LINE|L1 14247 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 411-155 chr2 116461751 116461956 + 2 NA Intergenic L1MA6|LINE|L1 1118038 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 531-85 chr17 59786343 59786698 + 2 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -54746 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 330-79 chr10 126915100 126915372 + 2 NA intron (NM_001290223, intron 1 of 51) intron (NM_001290223, intron 1 of 51) 9827 NM_001380 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 462-163 chr21 29698953 29699313 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -49042 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 201-199 chr5 79088944 79089068 + 2 NA 3' UTR (NM_017614, exon 8 of 8) 3' UTR (NM_017614, exon 8 of 8) 19239 NM_001178005 23743 Hs.114172 NM_017614 ENSG00000132840 BHMT2 - betaine--homocysteine S-methyltransferase 2 protein-coding 194-135 chr3 183116028 183116172 + 2 NA Intergenic MER51E|LTR|ERV1 -16513 NR_120639 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 392-177 chr20 53419192 53419509 + 2 NA intron (NM_173485, intron 2 of 2) MIRb|SINE|MIR -133420 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 510-26 chr10 17804413 17804792 + 2 NA Intergenic L1MB4|LINE|L1 -4746 NM_002438 4360 Hs.75182 NM_002438 ENSG00000260314 MRC1 CD206|CLEC13D|CLEC13DL|MMR|MRC1L1|bA541I19.1|hMR mannose receptor C-type 1 protein-coding 237-268 chr4 87281213 87281372 + 2 NA Intergenic Intergenic 19291 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 248-378 chr7 51715797 51716004 + 2 NA Intergenic Intergenic -322644 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 213-169 chr22 34768090 34768284 + 2 NA intron (NR_138042, intron 3 of 4) L3|LINE|CR1 229729 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 296-189 chr18 1640042 1640211 + 2 NA Intergenic L1PREC2|LINE|L1 -280497 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 122-33 chr3 85543081 85543146 + 2 NA intron (NM_001256503, intron 2 of 9) intron (NM_001256503, intron 2 of 9) 38054 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 533-82 chr17 67686491 67686972 + 2 NA intron (NM_012417, intron 8 of 8) intron (NM_012417, intron 8 of 8) -31102 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 196-270 chr9 71882160 71882326 + 2 NA intron (NM_001025780, intron 1 of 3) L1M4|LINE|L1 29002 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 407-334 chr8 134954750 134955096 + 2 NA Intergenic L1MA4|LINE|L1 104988 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 294-227 chr2 119359759 119359976 + 2 NA intron (NM_001322329, intron 1 of 6) Tigger1|DNA|TcMar-Tigger 6875 NM_001322329 130355 Hs.99488 NM_001017927 ENSG00000186132 C2orf76 AIM29 chromosome 2 open reading frame 76 protein-coding 470-141 chr2 170252903 170253278 + 2 NA intron (NM_001083615, intron 7 of 33) L2a|LINE|L2 74943 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 320-564 chr8 115775245 115775480 + 2 NA Intergenic LTR16A1|LTR|ERVL -106387 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 228-376 chr9 123008631 123008845 + 2 NA intron (NM_012197, intron 10 of 25) LTR37B|LTR|ERV1 -24905 NM_005294 2844 Hs.722039 NM_005294 ENSG00000011454 GPR21 - G protein-coupled receptor 21 protein-coding 265-417 chr9 111973085 111973275 + 2 NA Intergenic LTR85b|LTR|Gypsy? 41080 NR_039814 100616114 NR_039814 ENSG00000266315 MIR4668 mir-4668 microRNA 4668 ncRNA 168-109 chr8 78121924 78122089 + 2 NA Intergenic Intergenic -394334 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 390-422 chr9 95439587 95439851 + 2 NA Intergenic Intergenic -23890 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 230-208 chr20 52962858 52963057 + 2 NA Intergenic Intergenic -9401 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 626-97 chr3 187231799 187232332 + 2 NA intron (NM_001879, intron 10 of 15) intron (NM_001879, intron 10 of 15) -24436 NR_110052 101929106 Hs.640145 NR_110052 ENSG00000198491 LOC101929106 - uncharacterized LOC101929106 ncRNA 441-6 chr1 82558801 82559231 + 2 NA Intergenic Intergenic -344167 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 446-127 chr18 6356899 6357260 + 2 NA non-coding (NR_158611, exon 1 of 17) non-coding (NR_158611, exon 1 of 17) 1951 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 296-362 chr5 35215556 35215837 + 2 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) 14791 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 578-56 chr14 49237422 49237843 + 2 NA Intergenic L1PA16|LINE|L1 348748 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 172-64 chr2 123792340 123792499 + 2 NA Intergenic Intergenic 232755 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 237-85 chr12 123342509 123342673 + 2 NA intron (NM_018183, intron 4 of 31) intron (NM_018183, intron 4 of 31) 22252 NR_107039 102466877 NR_107039 ENSG00000284425 MIR8072 hsa-mir-8072 microRNA 8072 ncRNA 209-37 chr10 44016525 44016672 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 104196 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 329-40 chr1 247141670 247141878 + 2 NA intron (NM_001297567, intron 3 of 3) intron (NM_001297567, intron 3 of 3) -29357 NM_207401 388759 Hs.456511 NM_207401 C1orf229 - chromosome 1 open reading frame 229 protein-coding 421-230 chr5 17457147 17457443 + 2 NA intron (NR_134270, intron 1 of 2) MamRep137|DNA|TcMar-Tigger 13285 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 318-373 chr3 145130540 145130847 + 2 NA Intergenic Intergenic 938492 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 524-278 chr9 35420057 35420415 + 2 NA intron (NR_003582, intron 2 of 10) L1PB3|LINE|L1 13481 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 371-373 chr8 37007716 37007945 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 223456 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 385-98 chr14 65368756 65369052 + 2 NA Intergenic AluSq2|SINE|Alu -33721 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 208-113 chr2 46526455 46526605 + 2 NA intron (NM_001371283, intron 3 of 3) L1MB3|LINE|L1 -15960 NM_012249 23433 Hs.709193 NM_012249 ENSG00000119729 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 248-102 chr13 93241043 93241239 + 2 NA intron (NM_005708, intron 1 of 8) L1PB3|LINE|L1 14334 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 483-299 chrX 93595755 93596088 + 2 NA Intergenic Intergenic 77657 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 189-211 chr8 96683299 96683420 + 2 NA intron (NM_016134, intron 1 of 7) L1MA4|LINE|L1 38117 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 299-433 chr7 136719293 136719505 + 2 NA Intergenic Intergenic -149253 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 461-156 chr20 40050299 40050668 + 2 NA Intergenic Intergenic 46022 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 681-11 chr11 114693088 114693530 + 2 NA intron (NM_182495, intron 2 of 5) L1MD2|LINE|L1 14782 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 323-455 chr6 48378174 48378393 + 2 NA Intergenic Intergenic -309594 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 245-97 chr12 47064184 47064424 + 2 NA Intergenic Intergenic -15299 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 220-393 chr9 85001291 85001476 + 2 NA intron (NM_001018064, intron 16 of 17) intron (NM_001018064, intron 16 of 17) 295482 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 463-121 chr19 6948660 6948994 + 2 NA Intergenic Intergenic 42019 NR_024075 326342 Hs.688043 NM_001080498 ENSG00000268758 ADGRE4P EMR4|EMR4P|FIRE|GPR127|PGR16 adhesion G protein-coupled receptor E4, pseudogene pseudo 250-178 chr18 43919591 43919716 + 2 NA Intergenic Intergenic 612044 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 234-177 chr2 99951429 99951633 + 2 NA intron (NM_001025108, intron 6 of 23) Tigger18a|DNA|TcMar-Tigger 154052 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 305-521 chr8 31368578 31368777 + 2 NA Intergenic L1ME2|LINE|L1 -271075 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 623-69 chr2 154796681 154797174 + 2 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 98232 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 344-410 chr6 7091518 7091701 + 2 NA Intergenic L1ME4a|LINE|L1 -16134 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 386-129 chr17 53949203 53949415 + 2 NA Intergenic Intergenic 126382 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 233-353 chr7 39244448 39244593 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 84614 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 396-38 chr1 232139824 232140151 + 2 NA Intergenic Intergenic 214153 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 428-50 chr12 95006998 95007384 + 2 NA Intergenic AluJb|SINE|Alu -3478 NM_001258338 55967 Hs.506374 NM_018838 ENSG00000184752 NDUFA12 B17.2|DAP13|MC1DN23 NADH:ubiquinone oxidoreductase subunit A12 protein-coding 257-261 chr3 24563577 24563821 + 2 NA Intergenic L2a|LINE|L2 -67991 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 191-24 chr10 5181866 5181991 + 2 NA intron (NR_027916, intron 1 of 7) LTR25-int|LTR|ERV1 3259 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 327-255 chr2 50771683 50771991 + 2 NA intron (NM_001330093, intron 4 of 22) L2a|LINE|L2 -75575 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 668-59 chr22 24736865 24737423 + 2 NA intron (NM_001008496, intron 12 of 20) L1M1|LINE|L1 -27357 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 178-99 chr4 75921044 75921142 + 2 NA exon (NM_001042402, exon 6 of 9) exon (NM_001042402, exon 6 of 9) -18641 NM_006239 5470 Hs.290873 NM_006239 ENSG00000156194 PPEF2 PPP7CB protein phosphatase with EF-hand domain 2 protein-coding 680-41 chr15 76565743 76566223 + 2 NA intron (NR_148227, intron 23 of 32) intron (NR_148227, intron 23 of 32) -20664 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 337-73 chr10 115497220 115497523 + 2 NA intron (NM_207303, intron 24 of 28) L1PA15|LINE|L1 404006 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 308-452 chr7 16537249 16537552 + 2 NA intron (NM_001195280, intron 2 of 8) MamTip2|DNA|hAT-Tip100 10575 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 635-14 chr10 44260883 44261244 + 2 NA Intergenic Intergenic -31687 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 292-356 chr5 116723881 116724078 + 2 NA Intergenic MIRc|SINE|MIR 38230 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 264-163 chr17 5647100 5647280 + 2 NA Intergenic L1MEi|LINE|L1 -62681 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 258-95 chr12 83291412 83291599 + 2 NA Intergenic L1MC5|LINE|L1 604350 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 431-75 chr14 33392240 33392641 + 2 NA intron (NM_001165893, intron 3 of 10) MIRb|SINE|MIR -316497 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 349-232 chr19 47845545 47845818 + 2 NA Intergenic L1MB5|LINE|L1 23744 NM_000554 1406 Hs.617342 NM_000554 ENSG00000105392 CRX CORD2|CRD|LCA7|OTX3 cone-rod homeobox protein-coding 124-43 chr20 41181337 41181402 + 2 NA 3' UTR (NM_015035, exon 4 of 4) 3' UTR (NM_015035, exon 4 of 4) 12346 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 393-138 chr18 1861519 1861823 + 2 NA Intergenic MER41B|LTR|ERV1 -502042 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 380-18 chr1 111860248 111860473 + 2 NA intron (NM_172198, intron 2 of 6) MIRb|SINE|MIR -3455 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 260-348 chr5 42705108 42705320 + 2 NA intron (NM_001242403, intron 6 of 9) L1MA8|LINE|L1 -51604 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 522-273 chrX 42289672 42290115 + 2 NA Intergenic L1MEf|LINE|L1 -366339 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 358-530 chrX 98862313 98862663 + 2 NA Intergenic MER41-int|LTR|ERV1 -1297953 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 199-118 chr2 100107103 100107262 + 2 NA intron (NM_002285, intron 1 of 23) intron (NM_002285, intron 1 of 23) -1599 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 283-463 chr9 84506389 84506550 + 2 NA Intergenic LTR16E1|LTR|ERVL -137742 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 177-142 chr6 145287461 145287592 + 2 NA Intergenic (TTCTATT)n|Simple_repeat|Simple_repeat 399351 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 395-276 chr5 105936536 105936853 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger 837220 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 188-28 chr11 85725842 85725961 + 2 NA exon (NM_206927, exon 8 of 20) exon (NM_206927, exon 8 of 20) -6551 NM_206930 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 573-125 chr4 60113451 60113794 + 2 NA Intergenic Intergenic -808997 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 327-392 chr5 40057152 40057419 + 2 NA Intergenic Intergenic 4994 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 464-153 chr21 37628385 37628726 + 2 NA intron (NM_002240, intron 3 of 3) L1M4|LINE|L1 208256 NM_130438 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 350-378 chr5 2003478 2003682 + 2 NA Intergenic Intergenic 116249 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 344-301 chr3 5963554 5963823 + 2 NA Intergenic Intergenic -713433 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 295-83 chr11 101222614 101222878 + 2 NA Intergenic L1M2c|LINE|L1 -92933 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 355-481 chr7 143178389 143178688 + 2 NA intron (NM_001130026, intron 8 of 10) L1MEd|LINE|L1 -4881 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 322-15 chr1 80109605 80109798 + 2 NA Intergenic L1PA16|LINE|L1 -426054 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 444-42 chr11 82337668 82337996 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 66081 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 311-401 chr5 36450594 36450839 + 2 NA Intergenic Intergenic -148814 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 271-111 chr12 131641311 131641558 + 2 NA Intergenic Intergenic 6687 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 358-163 chr17 77586211 77586565 + 2 NA Intergenic L1PA17|LINE|L1 39447 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 382-355 chr6 66165331 66165553 + 2 NA Intergenic HERVIP10B3-int|LTR|ERV1 377563 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 552-9 chr1 176583873 176584361 + 2 NA intron (NM_021936, intron 2 of 4) L1MA5A|LINE|L1 120942 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 432-267 chr7 32252058 32252445 + 2 NA intron (NM_001322059, intron 1 of 17) L2b|LINE|L2 47077 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 263-313 chr5 16244712 16244962 + 2 NA Intergenic L1MC1|LINE|L1 64596 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 199-32 chr11 17958344 17958512 + 2 NA intron (NR_104040, intron 9 of 11) intron (NR_104040, intron 9 of 11) 54619 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 548-95 chr17 68585004 68585380 + 2 NA intron (NM_017565, intron 1 of 10) L4_A_Mam|LINE|RTE-X 16175 NM_017565 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 265-94 chr13 85630819 85631050 + 2 NA Intergenic Intergenic 168485 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 407-303 chr7 79090725 79091068 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 81908 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 243-275 chr3 26669680 26669884 + 2 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) -24775 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 270-202 chr2 229241825 229241999 + 2 NA intron (NM_001330158, intron 1 of 3) intron (NM_001330158, intron 1 of 3) -9820 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 451-86 chr16 20050461 20050888 + 2 NA intron (NM_001002911, intron 1 of 1) intron (NM_001002911, intron 1 of 1) 23104 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 513-172 chr22 33939260 33939666 + 2 NA Intergenic Intergenic -16575 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 344-351 chr4 43270832 43271168 + 2 NA Intergenic Intergenic 221543 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 371-246 chr3 93963306 93963513 + 2 NA intron (NM_001314077, intron 1 of 15) ERVL-E-int|LTR|ERVL 10672 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 519-239 chr8 115882842 115883224 + 2 NA Intergenic L2a|LINE|L2 -214058 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 126-17 chr12 33562696 33562804 + 2 NA Intergenic L1MA5|LINE|L1 -122931 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 331-12 chr1 90614538 90614828 + 2 NA Intergenic MIR|SINE|MIR -43067 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 410-297 chr8 42706635 42706899 + 2 NA intron (NM_001347717, intron 2 of 6) intron (NM_001347717, intron 2 of 6) 9391 NM_001347717 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 418-136 chr2 228403369 228403635 + 2 NA Intergenic Intergenic 207893 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 119-35 chr2 115826327 115826418 + 2 NA intron (NM_001321912, intron 22 of 25) L1MEc|LINE|L1 482557 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 324-166 chr14 76732738 76732930 + 2 NA Intergenic ORSL|DNA|hAT-Tip100 -28634 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 377-424 chr9 18927808 18928058 + 2 NA 3' UTR (NM_001287050, exon 3 of 3) 3' UTR (NM_001287050, exon 3 of 3) 105276 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 469-146 chr2 204411875 204412292 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -133392 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 650-29 chr14 68007163 68007713 + 2 NA intron (NM_133509, intron 7 of 10) L1MB7|LINE|L1 183846 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 395-152 chr19 29451199 29451528 + 2 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 74389 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 477-251 chr7 7957475 7957886 + 2 NA intron (NR_110018, intron 2 of 4) intron (NR_110018, intron 2 of 4) 11072 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 339-107 chr11 93978073 93978286 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -43175 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 279-74 chr12 4366230 4366419 + 2 NA Intergenic L1MEf|LINE|L1 13388 NM_020638 8074 Hs.287370 NM_020638 ENSG00000118972 FGF23 ADHR|FGFN|HFTC2|HPDR2|HYPF|PHPTC fibroblast growth factor 23 protein-coding 759-36 chr2 43802220 43802907 + 2 NA intron (NM_016008, intron 10 of 12) intron (NM_016008, intron 10 of 12) 28524 NM_016008 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 127-75 chr7 97395172 97395282 + 2 NA Intergenic L1ME3D|LINE|L1 278634 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 478-311 chr9 95169897 95170323 + 2 NA intron (NM_001243744, intron 6 of 13) intron (NM_001243744, intron 6 of 13) -84016 NR_036109 100422842 NR_036109 ENSG00000207617 MIR3074 mir-3074 microRNA 3074 ncRNA 151-86 chr8 103555048 103555172 + 2 NA intron (NM_001348497, intron 1 of 22) L1PA15|LINE|L1 -53200 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 281-106 chr13 83471233 83471504 + 2 NA Intergenic MIRc|SINE|MIR 411025 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 356-183 chr16 62558825 62559138 + 2 NA Intergenic L1M1|LINE|L1 -522543 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 462-257 chr7 13543286 13543613 + 2 NA Intergenic Intergenic 443065 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 429-271 chr7 30615638 30615992 + 2 NA intron (NM_002047, intron 8 of 16) intron (NM_002047, intron 8 of 16) 20937 NM_002047 2617 Hs.404321 NM_002047 ENSG00000106105 GARS CMT2D|DSMAV|GlyRS|HMN5|SMAD1 glycyl-tRNA synthetase protein-coding 268-5 chr1 55683290 55683555 + 2 NA Intergenic Intergenic 261541 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 142-17 chr13 22749375 22749468 + 2 NA Intergenic Intergenic 148760 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 267-9 chr1 72793667 72793884 + 2 NA Intergenic LTR79|LTR|ERVL -511236 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 495-227 chr6 162331900 162332382 + 2 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -394991 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 322-252 chr2 80727120 80727300 + 2 NA Intergenic L1MA1|LINE|L1 413831 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 940 chr1 213696107 213696755 + 2 NA Intergenic AluSp|SINE|Alu -228318 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 346-293 chr22 43745247 43745436 + 2 NA intron (NM_198856, intron 4 of 29) intron (NM_198856, intron 4 of 29) 66964 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 671-5 chr1 79309719 79310213 + 2 NA Intergenic Intergenic -303236 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 260-241 chr20 31242189 31242430 + 2 NA Intergenic Intergenic -15355 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 724-19 chr15 76834484 76835037 + 2 NA intron (NR_148227, intron 5 of 32) L1PA15|LINE|L1 27184 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 413-94 chr15 27644103 27644415 + 2 NA Intergenic L1PA10|LINE|L1 455056 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 281-120 chr14 63609825 63610096 + 2 NA intron (NM_080666, intron 2 of 2) intron (NM_080666, intron 2 of 2) 31911 NM_001008726 112840 Hs.655666 NM_080666 ENSG00000140006 WDR89 C14orf150|MSTP050 WD repeat domain 89 protein-coding 268-315 chr5 86217492 86217709 + 2 NA Intergenic Intergenic -64844 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 150-46 chr19 57128441 57128538 + 2 NA intron (NM_020903, intron 3 of 3) intron (NM_020903, intron 3 of 3) 8348 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 140-84 chr9 71265304 71265419 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -143740 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 419-190 chr3 94824508 94824846 + 2 NA Intergenic Intergenic -113586 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 312-157 chr14 83724177 83724397 + 2 NA Intergenic L1M5|LINE|L1 1081655 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 335-287 chr2 241038873 241039144 + 2 NA intron (NM_001080437, intron 6 of 31) intron (NM_001080437, intron 6 of 31) 40390 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 367-135 chr15 24997325 24997582 + 2 NA intron (NR_146177, intron 15 of 147) intron (NR_146177, intron 15 of 147) 10528 NR_001292 338427 NR_001292 ENSG00000239014 SNORD108 HBII-437 small nucleolar RNA, C/D box 108 snoRNA 784-58 chr7 36921546 36922143 + 2 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -2412 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 473-299 chr9 103682442 103682840 + 2 NA Intergenic Intergenic -317068 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 143-51 chr20 55230894 55231022 + 2 NA Intergenic Intergenic -192085 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 347-155 chr15 80431562 80431764 + 2 NA intron (NM_014862, intron 1 of 18) intron (NM_014862, intron 1 of 18) 27281 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 600-21 chr11 81368828 81369269 + 2 NA Intergenic Intergenic 521788 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 480-85 chr14 82270024 82270426 + 2 NA Intergenic MER4A|LTR|ERV1 -372407 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 292-412 chr7 69018158 69018387 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 579352 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 553-198 chr5 164715218 164715719 + 2 NA Intergenic Intergenic 245189 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 263 chr1 31921721 31921948 + 2 NA intron (NM_001195101, intron 1 of 4) intron (NM_001195101, intron 1 of 4) 15984 NM_001369858 8073 Hs.470477 NM_003479 ENSG00000184007 PTP4A2 HH13|HH7-2|HU-PP-1|OV-1|PRL-2|PRL2|PTP4A|PTPCAAX2|ptp-IV1a|ptp-IV1b protein tyrosine phosphatase 4A2 protein-coding 208-12 chr1 170136990 170137186 + 2 NA Intergenic Intergenic -8959 NM_001136107 149281 Hs.553612 NM_001136107 ENSG00000203740 METTL11B C1orf184|HOMT1B|NTM1B methyltransferase like 11B protein-coding 351-324 chr3 187809786 187809972 + 2 NA Intergenic Intergenic -64411 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 273-390 chr6 67814281 67814469 + 2 NA Intergenic L1MA6|LINE|L1 -240976 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 293-76 chr12 1891652 1891805 + 2 NA intron (NM_172364, intron 6 of 37).2 L1MA4A|LINE|L1 26924 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 363-331 chr4 71197252 71197574 + 2 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 10127 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 493-27 chr10 32027996 32028475 + 2 NA intron (NM_004521, intron 15 of 25) MIRc|SINE|MIR 28190 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 332-44 chr10 4535905 4536204 + 2 NA Intergenic MER77|LTR|ERVL -120102 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 352-416 chr5 46271488 46271795 + 2 NA Intergenic ALR/Alpha|Satellite|centr -575261 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 562-200 chr7 29564644 29565154 + 2 NA promoter-TSS (NM_001329997) promoter-TSS (NM_001329997) -634 NM_001329997 222171 Hs.91109 NM_175887 ENSG00000176532 PRR15 - proline rich 15 protein-coding 293-191 chr2 79406864 79407073 + 2 NA Intergenic Intergenic 93876 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 254-345 chr6 46560434 46560631 + 2 NA intron (NM_016593, intron 10 of 11) L2a|LINE|L2 -68465 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 232-261 chr4 31958983 31959212 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -38282 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 423-98 chr17 56147440 56147750 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -5880 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 476-64 chr12 65523979 65524436 + 2 NA intron (NR_120431, intron 2 of 3) L2b|LINE|L2 33104 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 399-131 chr2 5226465 5226715 + 2 NA Intergenic Intergenic 464528 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 334-531 chr8 77761789 77762072 + 2 NA Intergenic Intergenic 311233 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 397-270 chr5 166344650 166345004 + 2 NA Intergenic Intergenic 581543 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 551-170 chr5 140752068 140752463 + 2 NA Intergenic L1PREC2|LINE|L1 26106 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 361-139 chr14 59844030 59844239 + 2 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) 26642 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 300-171 chr19 27692924 27693118 + 2 NA Intergenic HSAT4|Satellite|centr -100410 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 471-164 chr3 5569878 5570229 + 2 NA Intergenic Intergenic -319798 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 297-216 chr2 83297591 83297822 + 2 NA Intergenic Intergenic -225108 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 195-59 chr14 29100855 29100980 + 2 NA Intergenic L2a|LINE|L2 -315130 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 282-14 chr1 163007091 163007368 + 2 NA Intergenic L2b|LINE|L2 -61377 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 133-11 chr10 122064454 122064538 + 2 NA intron (NM_206861, intron 3 of 19) MER6B|DNA|TcMar-Tigger -48389 NM_001291879 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 242-281 chr4 141955441 141955671 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 318973 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 349-436 chr5 169498515 169498793 + 2 NA Intergenic Intergenic -85119 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 221-78 chr14 48567112 48567243 + 2 NA Intergenic Intergenic -772163 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 319-14 chr1 97822244 97822449 + 2 NA intron (NM_000110, intron 3 of 22) (TA)n|Simple_repeat|Simple_repeat 25425 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 258-210 chr2 185959927 185960123 + 2 NA Intergenic L1PB1|LINE|L1 126292 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 269-101 chr12 128606659 128606821 + 2 NA intron (NM_001136103, intron 3 of 8) intron (NM_001136103, intron 3 of 8) 217218 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 183-76 chr2 76233896 76234063 + 2 NA Intergenic L1MA6|LINE|L1 -523064 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 364-201 chr2 27927690 27928042 + 2 NA intron (NM_199193, intron 3 of 13) AluSx1|SINE|Alu -36752 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 213-170 chr22 34955147 34955358 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 42664 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 489-231 chr6 139210161 139210516 + 2 NA Intergenic L1PB2|LINE|L1 75258 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 327-13 chr1 97039032 97039223 + 2 NA Intergenic L1PA15|LINE|L1 -56796 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 251-412 chr9 25381644 25381793 + 2 NA Intergenic Intergenic 297140 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 368-497 chrX 112906445 112906664 + 2 NA Intergenic L1MCa|LINE|L1 -65723 NM_133265 154796 Hs.528051 NM_133265 ENSG00000126016 AMOT - angiomotin protein-coding 272-142 chr16 49165898 49166091 + 2 NA Intergenic L1ME1|LINE|L1 115844 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 371-213 chr20 15738816 15739059 + 2 NA intron (NM_001351663, intron 8 of 17) L2b|LINE|L2 184377 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 309-202 chr17 53972657 53972911 + 2 NA Intergenic Intergenic 149857 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 360-66 chr11 78821614 78821951 + 2 NA intron (NM_001098816, intron 12 of 33) L3|LINE|CR1 -246918 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 244-13 chr1 114378009 114378161 + 2 NA Intergenic HERV35I-int|LTR|ERV1 133118 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 309-310 chr20 59302432 59302706 + 2 NA intron (NM_207032, intron 2 of 4) intron (NM_207032, intron 2 of 4) 1958 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 326-87 chr10 130304591 130304879 + 2 NA Intergenic Intergenic 168326 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 352-248 chr2 114205841 114206127 + 2 NA Intergenic Intergenic -226000 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 346-485 chr8 82277231 82277461 + 2 NA Intergenic L1MA1|LINE|L1 -435060 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 446-244 chr5 94205974 94206403 + 2 NA intron (NM_001145678, intron 20 of 20) L1M7|LINE|L1 -94489 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 269-239 chr22 27698982 27699221 + 2 NA Intergenic L2b|LINE|L2 102655 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 398-232 chr4 16554655 16554890 + 2 NA intron (NM_001304435, intron 5 of 7) L1MC1|LINE|L1 328109 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 560-97 chr20 39203536 39203926 + 2 NA Intergenic Intergenic 21017 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 424-137 chr2 115755196 115755585 + 2 NA intron (NM_001321907, intron 10 of 23) L1MA5|LINE|L1 411575 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 280-35 chr1 233326033 233326299 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -1558 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 239-295 chr5 1993442 1993561 + 2 NA Intergenic L1M5|LINE|L1 106170 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 392-227 chr4 63019640 63019851 + 2 NA Intergenic Intergenic -857980 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 369-109 chr14 46245319 46245527 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 181264 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 368-184 chr16 82597287 82597524 + 2 NA Intergenic L2a|LINE|L2 -29564 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 513-146 chr2 137005086 137005430 + 2 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 239713 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 253-29 chr1 213662886 213663123 + 2 NA Intergenic Intergenic -261745 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 321-244 chr18 22633143 22633331 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 153600 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 265-172 chr2 24185852 24186015 + 2 NA intron (NM_001040710, intron 5 of 5) L1ME3B|LINE|L1 10880 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 551-141 chr4 133100821 133101277 + 2 NA intron (NR_125885, intron 7 of 8) L1M5|LINE|L1 48067 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 312-4 chr1 33829372 33829630 + 2 NA intron (NM_052896, intron 6 of 69) L1PA4|LINE|L1 -30974 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 430-191 chr3 64567428 64567794 + 2 NA intron (NR_110151, intron 1 of 1) intron (NR_110151, intron 1 of 1) 6265 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 322-276 chr2 163896056 163896252 + 2 NA Intergenic LTR101_Mam|LTR|ERVL -160146 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 451-212 chr7 25693819 25694211 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) -23284 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 307-400 chr5 136613493 136613769 + 2 NA Intergenic L1MA6|LINE|L1 -248155 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 375-302 chr4 123052576 123052915 + 2 NA intron (NM_001345856, intron 11 of 15) MLT2B3|LTR|ERVL 129667 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 297-13 chr1 79138803 79139034 + 2 NA Intergenic L1ME2|LINE|L1 -132188 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 286-417 chr7 45163256 45163475 + 2 NA intron (NM_005856, intron 1 of 2) intron (NM_005856, intron 1 of 2) 5574 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 564-2 chr1 21794409 21794769 + 2 NA Intergenic MER33|DNA|hAT-Charlie -11390 NM_001330394 84196 Hs.467524 NM_032236 ENSG00000090686 USP48 RAP1GA1|USP31 ubiquitin specific peptidase 48 protein-coding 289-337 chr4 59525721 59525928 + 2 NA Intergenic L1PB4|LINE|L1 512251 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 328-194 chr16 47935079 47935391 + 2 NA Intergenic Intergenic -30454 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 265-202 chr2 180335282 180335475 + 2 NA Intergenic Intergenic -328081 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 460-271 chr7 33629333 33629704 + 2 NA intron (NM_001348041, intron 22 of 22) MIRb|SINE|MIR -275397 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 474-163 chr2 225819645 225819981 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -322981 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 364-14 chr1 79028637 79028995 + 2 NA Intergenic AluSg7|SINE|Alu -22086 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 588-106 chr3 180904165 180904542 + 2 NA Intergenic HAL1|LINE|L1 -8317 NM_001013439 8087 Hs.478407 NM_005087 ENSG00000114416 FXR1 FXR1P FMR1 autosomal homolog 1 protein-coding 368-303 chr3 121290671 121290899 + 2 NA intron (NM_001348343, intron 20 of 27) L1PB1|LINE|L1 241145 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 222-250 chr3 152045514 152045719 + 2 NA Intergenic Intergenic -117441 NR_110202 101928142 Hs.680207 NR_110202 AADACL2-AS1 - AADACL2 antisense RNA 1 ncRNA 459-284 chr7 86773996 86774348 + 2 NA intron (NM_001363522, intron 2 of 4) intron (NM_001363522, intron 2 of 4) 130258 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 348-434 chr5 154156369 154156685 + 2 NA Intergenic L1ME3B|LINE|L1 -34206 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 337-426 chr5 7092607 7092798 + 2 NA Intergenic Intergenic 176652 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 272-230 chr2 209069691 209069911 + 2 NA Intergenic Intergenic -354246 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 241-397 chr8 84967438 84967646 + 2 NA Intergenic Intergenic -139696 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 201-196 chr5 61514635 61514797 + 2 NA intron (NM_020928, intron 4 of 13) L1MEf|LINE|L1 -123044 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 235-135 chr17 15141926 15142115 + 2 NA Intergenic Intergenic -35833 NR_103559 94151 Hs.98684 NR_103559 CDRT8 - CMT1A duplicated region transcript 8 ncRNA 307-76 chr11 15405291 15405503 + 2 NA Intergenic Intergenic -238488 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 428 chr1 37343378 37343733 + 2 NA Intergenic Intergenic 130888 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 352-50 chr10 63389565 63389759 + 2 NA intron (NM_001322258, intron 1 of 24) L1M2|LINE|L1 -16614 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 302-307 chr3 191654013 191654170 + 2 NA Intergenic Intergenic 192928 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 365-360 chr6 126185230 126185454 + 2 NA Intergenic Intergenic -154447 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 346-125 chr13 103242546 103242836 + 2 NA Intergenic Intergenic -176274 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 497-207 chr4 135493220 135493599 + 2 NA Intergenic Intergenic -369850 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 288-321 chr5 23795972 23796215 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -155255 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 423-180 chr3 97059937 97060269 + 2 NA intron (NM_001080448, intron 3 of 17) AluSx4|SINE|Alu 245509 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 202-140 chr20 19118333 19118475 + 2 NA Intergenic Intergenic -94238 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 334-584 chrX 37389805 37390130 + 2 NA intron (NM_000950, intron 2 of 4) L1ME3A|LINE|L1 40603 NM_001173486 5638 Hs.190341 NM_000950 ENSG00000130962 PRRG1 PRGP1 proline rich and Gla domain 1 protein-coding 261-411 chr9 79561059 79561241 + 2 NA Intergenic MIRc|SINE|MIR -10623 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 371-312 chr5 58429835 58430073 + 2 NA Intergenic Intergenic 30132 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 251-141 chr18 45332132 45332358 + 2 NA intron (NM_001371319, intron 4 of 23) MER2|DNA|TcMar-Tigger 119250 NM_001242692 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 703-59 chr3 84035891 84036404 + 2 NA Intergenic L1PA13|LINE|L1 833428 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 141-46 chr20 49451668 49451772 + 2 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 30948 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 349-43 chr1 248592575 248592823 + 2 NA TTS (NM_001004693) TTS (NM_001004693) 1069 NM_001004693 127069 Hs.553585 NM_001004693 ENSG00000184022 OR2T10 OR1-64 olfactory receptor family 2 subfamily T member 10 protein-coding 316-157 chr13 76340222 76340421 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -405189 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 364-462 chr8 135388353 135388631 + 2 NA Intergenic MER31A|LTR|ERV1 -68964 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 236-352 chr8 75887886 75888053 + 2 NA Intergenic Intergenic 348001 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 604-141 chr6 52709000 52709475 + 2 NA Intergenic PABL_A-int|LTR|ERV1 35922 NR_033760 730152 Hs.739662 NR_033760 GSTA7P GSTAP2|GSTAP6 glutathione S-transferase alpha 7, pseudogene pseudo 620-74 chr20 42053572 42054023 + 2 NA Intergenic L2b|LINE|L2 -435420 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 188-140 chr3 162366642 162366745 + 2 NA Intergenic Intergenic 869885 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 347-461 chr7 37796543 37796754 + 2 NA Intergenic Intergenic -51949 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 320-406 chr4 143084599 143084868 + 2 NA Intergenic Penelope1_Vert|LINE|Penelope 100128 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 241-66 chr11 58470294 58470508 + 2 NA Intergenic L1MB8|LINE|L1 -30228 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 355-386 chr5 10813705 10813902 + 2 NA Intergenic L1PA11|LINE|L1 -52569 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 282-263 chr20 33377103 33377292 + 2 NA intron (NM_001278168, intron 7 of 12) SVA_E|Retroposon|SVA 24322 NM_016408 51654 Hs.435952 NM_016082 ENSG00000101391 CDK5RAP1 C20orf34|C42|CGI-05|HSPC167 CDK5 regulatory subunit associated protein 1 protein-coding 715-89 chr8 130619327 130619787 + 2 NA Intergenic L1PREC2|LINE|L1 -175883 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 405-88 chr14 84342665 84342929 + 2 NA Intergenic Intergenic -929135 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 541-143 chr20 52502659 52502987 + 2 NA Intergenic Intergenic -118015 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 398-107 chr14 62241800 62242104 + 2 NA Intergenic MER11A|LTR|ERVK -101979 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 224-178 chr20 52620350 52620477 + 2 NA promoter-TSS (NR_110038) promoter-TSS (NR_110038) -425 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 361-91 chr12 13652763 13652982 + 2 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -276127 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 220-249 chr4 31900709 31900891 + 2 NA Intergenic Intergenic -96579 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 315-147 chr15 47629976 47630176 + 2 NA intron (NM_001198999, intron 4 of 19) L1MA4A|LINE|L1 -87429 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 873-7 chr12 16671850 16672638 + 2 NA Intergenic Intergenic -64030 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 486-126 chr19 36673322 36673616 + 2 NA Intergenic MLT2D|LTR|ERVL -6632 NM_001322823 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 329-440 chr5 7939039 7939278 + 2 NA Intergenic Intergenic 70010 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 182-62 chr15 27305334 27305509 + 2 NA intron (NM_001270873, intron 3 of 5) L1MD2|LINE|L1 -144102 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 325-14 chr1 96877921 96878226 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 155435 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 300-44 chr10 57244731 57245023 + 2 NA Intergenic Intergenic 59682 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 418-33 chr10 99788429 99788713 + 2 NA intron (NM_000392, intron 2 of 31) intron (NM_000392, intron 2 of 31) 5931 NM_000392 1244 Hs.368243 NM_000392 ENSG00000023839 ABCC2 ABC30|CMOAT|DJS|MRP2|cMRP ATP binding cassette subfamily C member 2 protein-coding 256-88 chr12 65917657 65917818 + 2 NA intron (NM_001300918, intron 3 of 4) intron (NM_001300918, intron 3 of 4) -35412 NR_158984 100129940 Hs.685856 NR_120478 ENSG00000197301 HMGA2-AS1 - HMGA2 antisense RNA 1 ncRNA 330-116 chr12 22571168 22571381 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -26728 NM_001286173 9847 Hs.271014 NM_014802 ENSG00000111731 C2CD5 CDP138|KIAA0528 C2 calcium dependent domain containing 5 protein-coding 345-195 chr16 73350051 73350247 + 2 NA Intergenic Intergenic -36656 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 211-281 chr7 96751474 96751602 + 2 NA Intergenic LTR79|LTR|ERVL -41647 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 243-224 chr2 118888838 118889067 + 2 NA Intergenic L1ME4a|LINE|L1 -40769 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 480-56 chr12 37721437 37721742 + 2 NA Intergenic ALR/Alpha|Satellite|centr -595185 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 300-279 chr3 96020413 96020583 + 2 NA Intergenic Intergenic -337305 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 581-45 chr14 70445780 70446167 + 2 NA Intergenic LTR25-int|LTR|ERV1 -6201 NM_003813 8747 Hs.178748 NM_003813 ENSG00000139985 ADAM21 ADAM 21|ADAM31 ADAM metallopeptidase domain 21 protein-coding 257-158 chr18 48047653 48047898 + 2 NA intron (NM_001371286, intron 3 of 4) MIRb|SINE|MIR 89373 NM_001039360 201501 Hs.515388 NM_001039360 ENSG00000184828 ZBTB7C APM-1|APM1|ZBTB36|ZNF857C zinc finger and BTB domain containing 7C protein-coding 196-227 chr6 118609887 118610027 + 2 NA intron (NM_001042475, intron 2 of 12) intron (NM_001042475, intron 2 of 12) 41634 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 475-299 chr9 108420862 108421184 + 2 NA Intergenic L1MCa|LINE|L1 434963 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 157-97 chr4 153576433 153576518 + 2 NA intron (NM_001131007, intron 7 of 34) intron (NM_001131007, intron 7 of 34) -63693 NR_134873 100419170 Hs.382102 NR_134873 ENSG00000250771 LOC100419170 - toll like receptor 2 pseudogene pseudo 314-366 chr3 22452596 22452826 + 2 NA Intergenic HAL1|LINE|L1 495572 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 329-459 chr5 64733834 64734072 + 2 NA intron (NM_173829, intron 3 of 4) L1MD1|LINE|L1 34738 NM_173829 285672 Hs.69504 NM_173829 ENSG00000153006 SREK1IP1 P18SRP|SFRS12IP1 SREK1 interacting protein 1 protein-coding 233-363 chr7 137530123 137530293 + 2 NA intron (NM_001321710, intron 20 of 32) L2c|LINE|L2 -186475 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 214-302 chr7 53950270 53950405 + 2 NA Intergenic L1MC4|LINE|L1 -138406 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 299-308 chr4 5879617 5879835 + 2 NA intron (NM_001014809, intron 1 of 13) intron (NM_001014809, intron 1 of 13) 8087 NM_001288662 1400 Hs.135270 NM_001313 ENSG00000072832 CRMP1 CRMP-1|DPYSL1|DRP-1|DRP1|ULIP-3 collapsin response mediator protein 1 protein-coding 366-457 chr8 135905473 135905757 + 2 NA Intergenic Intergenic 448159 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 310-361 chr4 31973230 31973440 + 2 NA Intergenic MER67D|LTR|ERV1 -24044 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 856-9 chr11 55048751 55049212 + 2 NA Intergenic ALR/Alpha|Satellite|centr -213174 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 386-183 chr2 126799811 126800140 + 2 NA Intergenic Intergenic -98915 NM_001322244 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 220-171 chr2 103115948 103116094 + 2 NA Intergenic Intergenic -131592 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 385-83 chr13 57827430 57827766 + 2 NA Intergenic Intergenic 195854 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 251-180 chr2 117532539 117532708 + 2 NA Intergenic MIR|SINE|MIR -282068 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 412-78 chr13 50961752 50961983 + 2 NA intron (NM_001142279, intron 9 of 9) L1MEc|LINE|L1 -51155 NR_046552 100874255 Hs.741501 NR_046552 RNASEH2B-AS1 - RNASEH2B antisense RNA 1 ncRNA 452-110 chr18 52843633 52844021 + 2 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -393274 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 426-298 chr8 92597393 92597733 + 2 NA intron (NR_125827, intron 3 of 4) L2|LINE|L2 57931 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 295-490 chr9 22174925 22175084 + 2 NA Intergenic MIRb|SINE|MIR -165691 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 261-104 chr14 52188090 52188302 + 2 NA Intergenic LTR27|LTR|ERV1 -79502 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 376-67 chr11 34758933 34759147 + 2 NA Intergenic MIR3|SINE|MIR 126474 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 205-120 chr17 66469471 66469629 + 2 NA intron (NM_002737, intron 2 of 16) intron (NM_002737, intron 2 of 16) -52696 NR_110822 101928001 Hs.650730 NR_110822 PRKCA-AS1 - PRKCA antisense RNA 1 ncRNA 644-30 chr17 72066364 72066973 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -5665 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 333-105 chr12 2254980 2255157 + 2 NA intron (NM_199460, intron 3 of 49).2 MIR1_Amn|SINE|MIR -14708 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 306-536 chr8 142421944 142422169 + 2 NA Intergenic L1MEf|LINE|L1 -18874 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 262-28 chr1 224578360 224578534 + 2 NA intron (NR_136293, intron 5 of 9) HAL1|LINE|L1 -37870 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 552-21 chr10 81181454 81181895 + 2 NA Intergenic Intergenic 531877 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 695-99 chr7 77456311 77456788 + 2 NA Intergenic Intergenic -40200 NM_001350899 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 377-324 chr5 75963340 75963679 + 2 NA Intergenic HAL1ME|LINE|L1 -119874 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 487-310 chr9 102126722 102127051 + 2 NA Intergenic L1PA4|LINE|L1 -388306 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 314-117 chr12 10654871 10655092 + 2 NA intron (NM_018423, intron 1 of 10) MER41-int|LTR|ERV1 19071 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 540-199 chr7 68325579 68325958 + 2 NA Intergenic AluJr4|SINE|Alu 305515 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 294-171 chr17_KI270729v1_random 12110 12323 + 2 NA NA (ATTCC)n|Simple_repeat|Simple_repeat NA NA 451-43 chr12 13759797 13760147 + 2 NA intron (NM_000834, intron 2 of 12) L2a|LINE|L2 220384 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 377-328 chr5 103795026 103795300 + 2 NA Intergenic LTR49-int|LTR|ERV1 -232374 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 514-166 chr20 11732590 11733083 + 2 NA Intergenic L1PA10|LINE|L1 137879 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 213-225 chr5 27577950 27578135 + 2 NA Intergenic Intergenic 105750 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 254-391 chr7 118529287 118529480 + 2 NA Intergenic (TCTATTA)n|Simple_repeat|Simple_repeat 304679 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 174-152 chr9 33033244 33033375 + 2 NA intron (NM_001539, intron 5 of 8) intron (NM_001539, intron 5 of 8) 8036 NM_001539 3301 Hs.445203 NM_001539 ENSG00000086061 DNAJA1 DJ-2|DjA1|HDJ2|HSDJ|HSJ-2|HSJ2|HSPF4|NEDD7|hDJ-2 DnaJ heat shock protein family (Hsp40) member A1 protein-coding 323-467 chr6 115211904 115212095 + 2 NA Intergenic L1PA17|LINE|L1 431836 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 448-258 chr7 46260039 46260305 + 2 NA Intergenic Intergenic -338900 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 308-28 chr1 158322504 158322741 + 2 NA Intergenic L1M1|LINE|L1 8909 NM_001764 910 Hs.1310 NM_001764 ENSG00000158485 CD1B CD1|CD1A|R1 CD1b molecule protein-coding 379-98 chr14 87918315 87918630 + 2 NA Intergenic L1MD|LINE|L1 74710 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 332-562 chr9 26938850 26939069 + 2 NA intron (NM_001321546, intron 1 of 12) L1M4c|LINE|L1 -8031 NM_001099223 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 740-66 chr6 58443394 58443857 + 2 NA Intergenic ALR/Alpha|Satellite|centr -482179 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 491-229 chr6 103501081 103501527 + 2 NA Intergenic Intergenic 1358242 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 361-201 chr2 8207081 8207318 + 2 NA TTS (NR_152741) TTS (NR_152741) 121220 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 302-349 chr5 73045643 73045875 + 2 NA intron (NM_001146032, intron 10 of 24) L1MDa|LINE|L1 -74816 NM_173490 134285 Hs.162246 NM_173490 ENSG00000157111 TMEM171 PRP2 transmembrane protein 171 protein-coding 119-13 chr12 18534592 18534659 + 2 NA intron (NM_001288774, intron 24 of 32) intron (NM_001288774, intron 24 of 32) 202884 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 501-155 chr3 24048851 24049176 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 54234 NR_026834 152024 Hs.385606 NR_026834 ENSG00000224074 LINC00691 - long intergenic non-protein coding RNA 691 ncRNA 327-537 chrX 67249543 67249863 + 2 NA Intergenic L1PBa|LINE|L1 -294318 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 320-403 chr4 118204825 118205039 + 2 NA intron (NM_004784, intron 6 of 13) intron (NM_004784, intron 6 of 13) -73830 NR_034011 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 545-137 chr22 43800574 43800889 + 2 NA intron (NM_022785, intron 2 of 31) L1MA4|LINE|L1 11574 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 339-175 chr15 60735565 60735753 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 54090 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 525-159 chr3 53670889 53671388 + 2 NA intron (NM_000720, intron 7 of 48) intron (NM_000720, intron 7 of 48) 175281 NM_018397 55349 Hs.126688 NM_018397 ENSG00000016391 CHDH - choline dehydrogenase protein-coding 348-532 chr8 122732026 122732297 + 2 NA Intergenic Intergenic -38055 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 282-220 chr2 119094072 119094300 + 2 NA Intergenic L1MEf|LINE|L1 64565 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 253-40 chr1 241614461 241614643 + 2 NA intron (NM_014322, intron 1 of 3) intron (NM_014322, intron 1 of 3) 21378 NM_001821 1122 Hs.654545 NM_001821 ENSG00000203668 CHML REP2 CHM like Rab escort protein protein-coding 347-163 chr16 12731376 12731638 + 2 NA intron (NM_018340, intron 2 of 3) HAL1|LINE|L1 11186 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 300-480 chr8 137998153 137998351 + 2 NA intron (NR_161374, intron 2 of 7) L1MEc|LINE|L1 85293 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 341-526 chr8 87526797 87527018 + 2 NA Intergenic Intergenic 347108 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 318-376 chr3 164042615 164042802 + 2 NA Intergenic L1MEf|LINE|L1 128848 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 280-270 chr3 175441097 175441288 + 2 NA intron (NM_207015, intron 5 of 13) MER2B|DNA|TcMar-Tigger 71652 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 455-24 chr10 39076380 39076748 + 2 NA Intergenic ALR/Alpha|Satellite|centr 379968 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 182-32 chr11 119108855 119108981 + 2 NA intron (NM_014807, intron 1 of 13) intron (NM_014807, intron 1 of 13) 1574 NM_014807 9854 Hs.26899 NM_014807 ENSG00000172375 C2CD2L DLNB23|TMEM24 C2CD2 like protein-coding 485-72 chr14 33992387 33992733 + 2 NA Intergenic Intergenic -41486 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 242-138 chr17 41200764 41200935 + 2 NA Intergenic (TTTGT)n|Simple_repeat|Simple_repeat 10962 NM_001190460 728318 Hs.727478 NM_001190460 ENSG00000240542 KRTAP9-1 KAP9.1|KRTAP9L3 keratin associated protein 9-1 protein-coding 439-291 chr8 127174564 127174907 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 22892 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 748-59 chr3 28146802 28147285 + 2 NA Intergenic MER3|DNA|hAT-Charlie -94576 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 194-170 chr5 118593383 118593549 + 2 NA Intergenic Intergenic -2722 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 196-265 chr9 21078037 21078215 + 2 NA promoter-TSS (NM_002176) promoter-TSS (NM_002176) -184 NM_002176 3456 Hs.93177 NM_002176 ENSG00000171855 IFNB1 IFB|IFF|IFN-beta|IFNB interferon beta 1 protein-coding 161-88 chr5 110343069 110343195 + 2 NA Intergenic MIR3|SINE|MIR 170783 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 216-325 chr7 91433903 91434022 + 2 NA Intergenic Intergenic 169529 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 351-439 chr7 30998248 30998581 + 2 NA Intergenic Intergenic 34461 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 272-396 chr6 130722133 130722352 + 2 NA Intergenic Intergenic -105163 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 543-173 chr3 189227098 189227586 + 2 NA intron (NM_198485, intron 3 of 5) intron (NM_198485, intron 3 of 5) 13252 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 257-124 chr15 54393548 54393772 + 2 NA intron (NM_001329919, intron 17 of 31) intron (NM_001329919, intron 17 of 31) 381012 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 217-230 chr3 96845218 96845409 + 2 NA intron (NM_001080448, intron 1 of 17) intron (NM_001080448, intron 1 of 17) 30719 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 209-104 chr15 47261802 47261985 + 2 NA intron (NM_001198999, intron 1 of 19) L1MB8|LINE|L1 77804 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 502-280 chr8 134768836 134769243 + 2 NA Intergenic AluSz|SINE|Alu 31568 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 360-379 chr5 129608992 129609295 + 2 NA intron (NM_133638, intron 8 of 22) intron (NM_133638, intron 8 of 22) -138951 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 500-88 chr15 24647562 24647895 + 2 NA Intergenic L1MC3|LINE|L1 -27666 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 175-107 chr4 185245 185367 + 2 NA intron (NR_110527, intron 3 of 4) L1PA11|LINE|L1 -27294 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 226-302 chr6 69447337 69447534 + 2 NA Intergenic L1M1|LINE|L1 349031 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 331-97 chr11 92646655 92646843 + 2 NA intron (NM_001008781, intron 2 of 24) L2c|LINE|L2 268879 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 591-106 chr4 31908942 31909289 + 2 NA Intergenic Intergenic -88264 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 417-307 chr9 82758103 82758446 + 2 NA Intergenic L1ME3A|LINE|L1 304868 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 372-303 chr22 34499484 34499732 + 2 NA Intergenic L1MA8|LINE|L1 498308 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 251-120 chr16 26322761 26322934 + 2 NA Intergenic L1MB5|LINE|L1 297610 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 351-183 chr18 4930086 4930432 + 2 NA Intergenic L1ME4b|LINE|L1 -150923 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 294-345 chr4 111288176 111288362 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -427622 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 496-9 chr1 61704203 61704682 + 2 NA intron (NM_032027, intron 3 of 6) AluSq2|SINE|Alu 20699 NM_032027 83941 Hs.656790 NM_032027 ENSG00000162604 TM2D1 BBP TM2 domain containing 1 protein-coding 334-446 chr5 156342896 156343101 + 2 NA intron (NM_172244, intron 2 of 7) L2b|LINE|L2 15834 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 284-395 chr8 16278092 16278264 + 2 NA Intergenic HAL1ME|LINE|L1 -85387 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 633-59 chr2 29593770 29594232 + 2 NA intron (NM_004304, intron 3 of 28) MER20|DNA|hAT-Charlie -118624 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 240-203 chr19 37600232 37600422 + 2 NA intron (NM_001172226, intron 3 of 3) L1PA16|LINE|L1 5451 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 260-202 chr2 19741165 19741357 + 2 NA Intergenic L1ME2|LINE|L1 -127593 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 332-422 chr5 99272777 99273037 + 2 NA Intergenic Intergenic -261083 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 214-164 chr2 79663578 79663743 + 2 NA intron (NM_001282598, intron 2 of 17) L2a|LINE|L2 -14301 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 348-397 chr5 23076338 23076601 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -223125 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 561-17 chr10 16573702 16574053 + 2 NA Intergenic Intergenic -51998 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 490-24 chr1 176009975 176010252 + 2 NA intron (NM_022457, intron 15 of 19) L1MC4|LINE|L1 -41573 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 686-83 chr8 122933900 122934535 + 2 NA intron (NM_001362797, intron 3 of 4) MIRb|SINE|MIR 91555 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 543-214 chr6 50326988 50327349 + 2 NA Intergenic Intergenic -277239 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 194-17 chr1 219788553 219788715 + 2 NA Intergenic Intergenic 140017 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 459-213 chr4 65127530 65127906 + 2 NA Intergenic Intergenic -123218 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 277-212 chr2 166998012 166998216 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 109627 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 287-24 chr1 165488051 165488220 + 2 NA intron (NR_026744, intron 5 of 6) intron (NR_026744, intron 5 of 6) -42780 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 479-135 chr3 55128585 55129001 + 2 NA Intergenic Intergenic -49379 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 310-383 chr4 157107326 157107493 + 2 NA intron (NM_000824, intron 2 of 9) Tigger1|DNA|TcMar-Tigger 31006 NM_001166060 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 340-503 chr7 21957796 21957987 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -11992 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 118-30 chr20 14245984 14246073 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 91584 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 397-65 chr12 53329408 53329704 + 2 NA intron (NM_001300837, intron 2 of 2) intron (NM_001300837, intron 2 of 2) 6220 NM_152860 121340 Hs.209402 NM_152860 ENSG00000170374 SP7 OI11|OI12|OSX|osterix Sp7 transcription factor protein-coding 223-222 chr3 106710129 106710336 + 2 NA Intergenic Intergenic 530406 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 399-170 chr2 187898470 187898792 + 2 NA Intergenic Intergenic -344126 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 363-146 chr14 77649573 77649785 + 2 NA Intergenic Intergenic -32912 NM_004863 9517 Hs.435661 NM_004863 ENSG00000100596 SPTLC2 HSN1C|LCB2|LCB2A|NSAN1C|SPT2|hLCB2a serine palmitoyltransferase long chain base subunit 2 protein-coding 168-23 chr12 55480886 55481039 + 2 NA Intergenic Intergenic -10824 NM_001005499 390327 Hs.632718 NM_001005499 ENSG00000184954 OR6C70 - olfactory receptor family 6 subfamily C member 70 protein-coding 200-189 chr4 76239698 76239843 + 2 NA intron (NM_001242936, intron 2 of 7) L1MB3|LINE|L1 -11930 NM_001242939 100631383 Hs.720509 NM_001242939 ENSG00000272414 FAM47E-STBD1 FAM47E FAM47E-STBD1 readthrough protein-coding 350-260 chr2 213692252 213692501 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -65691 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 543-18 chr1 208235664 208236089 + 2 NA intron (NM_025179, intron 1 of 31) intron (NM_025179, intron 1 of 31) 8508 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 187-105 chr3 56096552 56096713 + 2 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -244038 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 290-129 chr14 49425088 49425375 + 2 NA Intergenic Intergenic 161149 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 219-232 chr3 67695172 67695330 + 2 NA intron (NR_109992, intron 3 of 6) L1MC5a|LINE|L1 40554 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 385-74 chr12 121864945 121865303 + 2 NA intron (NM_001171993, intron 1 of 15) AluSx1|SINE|Alu -6265 NM_002150 3242 Hs.2899 NM_002150 ENSG00000158104 HPD 4-HPPD|4HPPD|GLOD3|HPPDASE|PPD 4-hydroxyphenylpyruvate dioxygenase protein-coding 361-476 chr9 70394241 70394548 + 2 NA intron (NM_001206, intron 1 of 1) L1MC|LINE|L1 20263 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 331-306 chr2 225595735 225595979 + 2 NA intron (NM_001371273, intron 5 of 7) intron (NM_001371273, intron 5 of 7) 194971 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 144-12 chr10 53068733 53068833 + 2 NA Intergenic Intergenic -297083 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 319-71 chr10 83108430 83108604 + 2 NA Intergenic L1PA13|LINE|L1 568572 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 218-56 chr11 85048715 85048883 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -125378 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 291-284 chr3 35026821 35027106 + 2 NA intron (NR_110817, intron 2 of 3) MSTB|LTR|ERVL-MaLR 367060 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 252-384 chr6 160585268 160585462 + 2 NA intron (NM_005577, intron 25 of 38) intron (NM_005577, intron 25 of 38) -74241 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 538-4 chr1 50069767 50070225 + 2 NA intron (NM_001324208, intron 1 of 6) intron (NM_001324208, intron 1 of 6) 21941 NM_001324208 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 192-203 chr8 66855756 66855912 + 2 NA intron (NM_001204173, intron 18 of 18) L1ME4b|LINE|L1 -14937 NM_001136161 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 488-195 chr4 115165480 115165829 + 2 NA Intergenic Intergenic -52034 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 173-74 chr2 170543380 170543526 + 2 NA intron (NM_001083615, intron 30 of 33) intron (NM_001083615, intron 30 of 33) 171114 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 325-517 chr7 136269375 136269553 + 2 NA Intergenic Intergenic -292105 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 353-306 chr22 44570099 44570395 + 2 NA intron (NR_028409, intron 2 of 4) HAL1|LINE|L1 907 NR_028410 388910 Hs.332685 NM_001012986 ENSG00000187012 LINC00207 NCRNA00207 long intergenic non-protein coding RNA 207 ncRNA 212-44 chr10 66948691 66948842 + 2 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 22730 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 295-250 chr20 1102060 1102224 + 2 NA Intergenic L1MB7|LINE|L1 -11087 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 501-204 chr5 25402113 25402490 + 2 NA Intergenic MLT2B5|LTR|ERVL 211348 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 290-65 chr11 4039952 4040223 + 2 NA intron (NM_001277962, intron 3 of 12) (TATTT)n|Simple_repeat|Simple_repeat -54598 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 384-106 chr14 42236199 42236503 + 2 NA Intergenic Intergenic 629495 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 233-94 chr14 59540059 59540206 + 2 NA intron (NM_001164399, intron 11 of 19) intron (NM_001164399, intron 11 of 19) 36680 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 397-289 chr6 143368834 143369179 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 73671 NM_001286259 134637 Hs.709561 NM_182503 ENSG00000189007 ADAT2 DEADC1|TAD2|dJ20N2|dJ20N2.1 adenosine deaminase tRNA specific 2 protein-coding 476-141 chr2 79982834 79983233 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -116450 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 514-9 chr1 106939201 106939693 + 2 NA Intergenic Intergenic -117227 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 150-72 chr3 175974771 175974860 + 2 NA Intergenic MER41A|LTR|ERV1 -198482 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 184-80 chr2 12774991 12775148 + 2 NA Intergenic MIRb|SINE|MIR 37702 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 367-132 chr14 87045639 87045914 + 2 NA Intergenic Intergenic 139998 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 500-39 chr10 120374157 120374571 + 2 NA Intergenic Intergenic -19141 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 314-582 chr8 119473558 119473863 + 2 NA Intergenic L1MC4a|LINE|L1 57264 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 649-13 chr11 55023689 55024192 + 2 NA Intergenic ALR/Alpha|Satellite|centr -238215 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 278-67 chr12 19686273 19686439 + 2 NA Intergenic Intergenic 245757 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 394-322 chr8 53160744 53161079 + 2 NA Intergenic Intergenic 90726 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 365-139 chr16 35765964 35766317 + 2 NA Intergenic ALR/Alpha|Satellite|centr 19588 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 508-31 chr10 96178890 96179248 + 2 NA intron (NR_138482, intron 3 of 4) L1MEf|LINE|L1 48447 NM_001330734 9849 Hs.600823 NM_014803 ENSG00000177853 ZNF518A ZNF518 zinc finger protein 518A protein-coding 476-148 chr2 133686684 133687066 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -118412 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 201-108 chr19 36510954 36511116 + 2 NA 3' UTR (NM_001166037, exon 3 of 3) 3' UTR (NM_001166037, exon 3 of 3) 17236 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 247-349 chr5 163123112 163123278 + 2 NA Intergenic L1MA9|LINE|L1 -314376 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 387-85 chr12 78985250 78985504 + 2 NA intron (NM_001291901, intron 2 of 9) intron (NM_001291901, intron 2 of 9) -60315 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 325-579 chr9 105768188 105768373 + 2 NA intron (NM_018112, intron 5 of 5) L1M5|LINE|L1 73739 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 204-40 chr11 43117522 43117672 + 2 NA Intergenic Intergenic 151772 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 325-506 chr7 53662137 53662436 + 2 NA intron (NR_038371, intron 5 of 5) L1MB4|LINE|L1 149645 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 353-404 chr5 34509762 34509971 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -146462 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 393-132 chr17 67493922 67494236 + 2 NA intron (NM_181671, intron 1 of 9) intron (NM_181671, intron 1 of 9) -22494 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 352-355 chr4 46144141 46144430 + 2 NA Intergenic L1PB2|LINE|L1 -20231 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 227-241 chr4 31529033 31529250 + 2 NA intron (NR_149121, intron 1 of 2) L1PA15|LINE|L1 22597 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 291-23 chr1 166388534 166388777 + 2 NA Intergenic MIRb|SINE|MIR 101384 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 247-67 chr11 95459594 95459788 + 2 NA Intergenic Intergenic -227216 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 374-116 chr15 91578126 91578475 + 2 NA Intergenic L1M5|LINE|L1 114961 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 365-148 chr16 82591345 82591538 + 2 NA Intergenic L1PREC2|LINE|L1 -35528 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 189-123 chr3 43785006 43785123 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -93470 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 412-280 chr6 76086735 76087067 + 2 NA Intergenic L2|LINE|L2 -14223 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 233-69 chr12 9257561 9257761 + 2 NA intron (NR_137429, intron 5 of 6) L4_C_Mam|LINE|RTE-X 17658 NR_137436 100499405 Hs.182314 NR_036466 ENSG00000237248 LINC00987 - long intergenic non-protein coding RNA 987 ncRNA 229-79 chr11 116388600 116388756 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -250744 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 373-335 chr5 118628997 118629187 + 2 NA TTS (NR_104998) TTS (NR_104998) 32904 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 241-3 chr1 7325503 7325655 + 2 NA intron (NM_001349608, intron 4 of 21) L2a|LINE|L2 64175 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 306-454 chr7 15116239 15116499 + 2 NA Intergenic L1ME1|LINE|L1 -141511 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 587-30 chr11 87317417 87317729 + 2 NA intron (NR_033149, intron 11 of 13) intron (NR_033149, intron 11 of 13) 279639 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 360-313 chr3 138635392 138635607 + 2 NA Intergenic L1ME3C|LINE|L1 26450 NM_018147 55179 Hs.173438 NM_018147 ENSG00000158234 FAIM FAIM1 Fas apoptotic inhibitory molecule protein-coding 389-107 chr14 84506477 84506837 + 2 NA Intergenic Intergenic -765275 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 212-14 chr1 165199834 165199964 + 2 NA Intergenic Intergenic 156342 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 256-56 chr10 113418221 113418407 + 2 NA Intergenic Intergenic -132517 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 521-64 chr12 34598213 34598554 + 2 NA Intergenic GSATII|Satellite|centr 575887 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 306-404 chr5 104773723 104773955 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -325635 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 321-313 chr2 185355165 185355374 + 2 NA Intergenic Intergenic -188197 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 543-59 chr12 4186183 4186610 + 2 NA Intergenic L1ME4b|LINE|L1 -87366 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 323-123 chr12 127425591 127425877 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -85662 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 360-459 chr8 77735119 77735414 + 2 NA Intergenic Intergenic 284569 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 221-299 chr8 91292408 91292612 + 2 NA intron (NM_134266, intron 3 of 18) intron (NM_134266, intron 3 of 18) 43191 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 420-246 chr6 21535480 21535692 + 2 NA Intergenic L3|LINE|CR1 -23694 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 308-224 chr2 47173181 47173461 + 2 NA 5' UTR (NM_001305626, exon 1 of 5) 5' UTR (NM_001305626, exon 1 of 5) 886 NM_001305626 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 209-54 chr11 14185665 14185817 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 172744 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 338-252 chr2 48618460 48618696 + 2 NA intron (NM_001193487, intron 1 of 7) intron (NM_001193487, intron 1 of 7) 722 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 373-367 chr6 130085327 130085564 + 2 NA intron (NM_001007102, intron 14 of 21) intron (NM_001007102, intron 14 of 21) 65801 NM_001346550 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 493-131 chr2 6628257 6628596 + 2 NA intron (NR_110498, intron 2 of 2) L2c|LINE|L2 5361 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 184-188 chrX 14535614 14535747 + 2 NA intron (NM_001118886, intron 2 of 8) intron (NM_001118886, intron 2 of 8) 6144 NM_001118886 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 477-259 chr7 47187860 47188221 + 2 NA Intergenic Intergenic 276763 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 369-74 chr12 14566324 14566617 + 2 NA intron (NM_024829, intron 1 of 10) intron (NM_024829, intron 1 of 10) -1262 NR_120465 101928290 Hs.131933 NR_120465 ENSG00000256751 PLBD1-AS1 - PLBD1 antisense RNA 1 ncRNA 239-96 chr14 42017441 42017590 + 2 NA Intergenic Intergenic 410659 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 407-143 chr2 100483855 100484089 + 2 NA TTS (NM_001011717) TTS (NM_001011717) 13490 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 523-176 chr3 34259918 34260302 + 2 NA Intergenic Intergenic 461480 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 192-67 chr14 61895622 61895757 + 2 NA intron (NM_001367661, intron 2 of 8) (TAC)n|Simple_repeat|Simple_repeat -32006 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 341-173 chr15 91904385 91904666 + 2 NA intron (NR_135775, intron 1 of 10) intron (NR_135775, intron 1 of 10) 50221 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 268-381 chr7 92414792 92415044 + 2 NA intron (NR_145992, intron 9 of 9) L1ME4b|LINE|L1 22396 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 288-175 chr2 22036441 22036683 + 2 NA Intergenic Intergenic -325910 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 392-269 chr6 2210074 2210377 + 2 NA intron (NM_001500, intron 1 of 10) MIR|SINE|MIR -34234 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 511-273 chr8 138453520 138453911 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 43546 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 285-47 chr10 107064137 107064339 + 2 NA intron (NM_001206569, intron 1 of 25) MIR3|SINE|MIR 100468 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 198-224 chr7 15049035 15049185 + 2 NA Intergenic L1ME1|LINE|L1 -74252 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 666-36 chr16 63043826 63044216 + 2 NA Intergenic L1MA4|LINE|L1 -1007583 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 428-34 chr11 23352580 23352899 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 66451 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 263-414 chr8 62756695 62756943 + 2 NA intron (NM_001304533, intron 4 of 6) intron (NM_001304533, intron 4 of 6) -221042 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 267-414 chr8 49311416 49311620 + 2 NA Intergenic L1M4|LINE|L1 200662 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 191-182 chr5 180994676 180994862 + 2 NA intron (NM_197975, intron 2 of 7) L1MDa|LINE|L1 5923 NM_197975 10917 Hs.225949 NM_006707 ENSG00000168903 BTNL3 BTN9.1|BTNLR butyrophilin like 3 protein-coding 235-337 chr7 89236072 89236257 + 2 NA intron (NM_181646, intron 2 of 3) L2c|LINE|L2 -440427 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 228-335 chr8 78026290 78026495 + 2 NA Intergenic Intergenic -489948 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 387-297 chr5 143885890 143886172 + 2 NA Intergenic Intergenic 73870 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 357-380 chr6 40602993 40603210 + 2 NA Intergenic LTR16C|LTR|ERVL -15737 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 234-4 chr1 37197848 37198027 + 2 NA Intergenic Intergenic 36374 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 893-32 chr3 90649759 90650395 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1542456 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 339-132 chr12 88218955 88219202 + 2 NA Intergenic L1PA15|LINE|L1 76771 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 452-79 chr14 63315332 63315699 + 2 NA intron (NM_145171, intron 2 of 2) intron (NM_145171, intron 2 of 2) 3420 NM_145171 122876 Hs.375028 NM_145171 ENSG00000179600 GPHB5 B5|GPB5|ZLUT1 glycoprotein hormone subunit beta 5 protein-coding 361-439 chr8 66367714 66367963 + 2 NA Intergenic Intergenic 61139 NR_040434 100505676 Hs.121613 NM_001242759 ENSG00000246145 RRS1-AS1 - RRS1 antisense RNA 1 (head to head) ncRNA 229-382 chr8 55048892 55049078 + 2 NA Intergenic L1M2c|LINE|L1 -53043 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 285-199 chr2 75880955 75881193 + 2 NA Intergenic Intergenic -170159 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 269-206 chr2 116375312 116375511 + 2 NA Intergenic L1MB7|LINE|L1 1031596 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 363-416 chr7 53005837 53006086 + 2 NA Intergenic L1ME3|LINE|L1 -29672 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 271-47 chr10 55439221 55439424 + 2 NA intron (NM_001354404, intron 2 of 34) L1MC4|LINE|L1 -159720 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 319-523 chr8 59259395 59259632 + 2 NA Intergenic MamRep4096|DNA|hAT-Tip100 140303 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 249-57 chr10 76693625 76693866 + 2 NA Intergenic MIR|SINE|MIR -194299 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 319-277 chr2 193405167 193405383 + 2 NA Intergenic Intergenic 655430 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 321-556 chr8 87330443 87330662 + 2 NA intron (NM_173538, intron 8 of 10) L1MCa|LINE|L1 464137 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 504-92 chr16 65502074 65502444 + 2 NA intron (NR_027755, intron 2 of 8) L3|LINE|CR1 74041 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 430-128 chr18 64362075 64362350 + 2 NA intron (NR_033881, intron 5 of 9) THE1C|LTR|ERVL-MaLR -102157 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 271-217 chr2 205111099 205111263 + 2 NA intron (NM_205863, intron 5 of 21) intron (NM_205863, intron 5 of 21) 565706 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 336-233 chr18 66857651 66857917 + 2 NA Intergenic Intergenic -223800 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 434-35 chr10 58144624 58144974 + 2 NA Intergenic Intergenic 123095 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 427-129 chr2 166312311 166312603 + 2 NA intron (NM_001365536, intron 1 of 26) Tigger1|DNA|TcMar-Tigger 63487 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 413-212 chr4 35601963 35602314 + 2 NA Intergenic Intergenic 641801 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 302-334 chr4 108322132 108322356 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 150124 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 304-189 chr17 5684652 5684889 + 2 NA Intergenic L1ME3A|LINE|L1 -87464 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 240-356 chr5 107135683 107135886 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -124770 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 316-121 chr12 18366838 18367035 + 2 NA intron (NM_001288774, intron 12 of 32) intron (NM_001288774, intron 12 of 32) 105396 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 561-198 chr8 69298473 69298911 + 2 NA Intergenic Intergenic 149552 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 178-23 chr10 104565203 104565351 + 2 NA Intergenic L1MB5|LINE|L1 -76013 NM_014978 22986 Hs.671950 NM_014978 ENSG00000156395 SORCS3 SORCS sortilin related VPS10 domain containing receptor 3 protein-coding 233-177 chr2 116514072 116514229 + 2 NA Intergenic Intergenic 1170335 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 261-224 chr21 30124845 30125029 + 2 NA Intergenic Intergenic 41868 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 220-39 chr10 18402574 18402754 + 2 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 2089 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 432-35 chr10 84252801 84253150 + 2 NA exon (NM_002921, exon 4 of 7) exon (NM_002921, exon 4 of 7) 7922 NM_001012722 5995 Hs.1544 NM_002921 ENSG00000148604 RGR RP44 retinal G protein coupled receptor protein-coding 655-58 chr2 78007990 78008403 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -53170 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 284-95 chr12 99953706 99953954 + 2 NA intron (NM_152788, intron 1 of 25) intron (NM_152788, intron 1 of 25) 30824 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 641-63 chr2 108939643 108940212 + 2 NA intron (NM_022336, intron 1 of 11) intron (NM_022336, intron 1 of 11) 49293 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 253-178 chr2 33703174 33703338 + 2 NA Intergenic Intergenic -3630 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 660-120 chr9 86524574 86525052 + 2 NA Intergenic MIRc|SINE|MIR -170403 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 296-262 chr20 11739188 11739477 + 2 NA Intergenic L1M4|LINE|L1 131383 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 368-99 chr12 16635868 16636077 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -27758 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 366-17 chr1 106352234 106352531 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -324129 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 309-235 chr2 18018951 18019225 + 2 NA Intergenic L1PA16|LINE|L1 140421 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 332-149 chr14 48461853 48462126 + 2 NA Intergenic MLT2C1|LTR|ERVL -666975 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 228-8 chr1 78650669 78650848 + 2 NA intron (NM_006417, intron 2 of 8) intron (NM_006417, intron 2 of 8) 927 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 587-56 chr16 62985606 62986020 + 2 NA Intergenic Intergenic -949375 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 369-37 chr10 48672106 48672419 + 2 NA Intergenic Intergenic -12611 NM_001370154 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 248-277 chr4 46532475 46532648 + 2 NA Intergenic L1MEg|LINE|L1 -142433 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 291-36 chr1 224933720 224933960 + 2 NA intron (NM_001349912, intron 1 of 5) L1MA4A|LINE|L1 4165 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 446-279 chr7 69121382 69121743 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger 476062 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 420-8 chr1 57638561 57638797 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -213758 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 394-59 chr11 31214471 31214827 + 2 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 155090 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 205-10 chr1 49219815 49220000 + 2 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -37504 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 438-126 chr2 88394843 88395181 + 2 NA Intergenic Intergenic 57681 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 269-353 chr6 107367120 107367301 + 2 NA intron (NM_020381, intron 1 of 7) L1M4a2|LINE|L1 92354 NM_020381 57107 Hs.745008 NM_020381 ENSG00000164494 PDSS2 C6orf210|COQ10D3|COQ1B|DLP1|bA59I9.3|hDLP1 decaprenyl diphosphate synthase subunit 2 protein-coding 445-142 chr2 198179230 198179624 + 2 NA Intergenic L1MEc|LINE|L1 195670 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 263-338 chr5 144210568 144210732 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 5259 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 222-245 chr3 115459192 115459348 + 2 NA Intergenic L1MC3|LINE|L1 -164240 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 184-63 chr14 101383999 101384151 + 2 NA Intergenic L1MEc|LINE|L1 23847 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 152-45 chr2 31729913 31730060 + 2 NA Intergenic L1MA4|LINE|L1 73994 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 223-124 chr18 1933514 1933696 + 2 NA Intergenic Intergenic -573976 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 221-218 chr4 66411504 66411698 + 2 NA Intergenic L1ME1|LINE|L1 134777 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 339-392 chr4 160581 160801 + 2 NA intron (NR_110527, intron 3 of 4) AluSx3|SINE|Alu 32570 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 224-356 chr9 137574363 137574576 + 2 NA 5' UTR (NM_001346388, exon 4 of 8) 5' UTR (NM_001346388, exon 4 of 8) 4157 NM_001346373 92715 Hs.292570 NM_138778 ENSG00000148399 DPH7 C9orf112|RRT2|WDR85 diphthamide biosynthesis 7 protein-coding 262-272 chr3 29248839 29249035 + 2 NA Intergenic Intergenic 32002 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 192-142 chr4 31616140 31616288 + 2 NA Intergenic MER101-int|LTR|ERV1 109670 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 310-41 chr10 48843938 48844118 + 2 NA intron (NM_020945, intron 39 of 61) intron (NM_020945, intron 39 of 61) 70207 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 335-358 chr3 110638977 110639246 + 2 NA Intergenic Intergenic 430848 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 240-374 chr6 48215186 48215378 + 2 NA Intergenic L1MEc|LINE|L1 -146593 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 268-428 chr9 10516391 10516556 + 2 NA intron (NM_002839, intron 2 of 45) L1MB1|LINE|L1 96529 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 481-119 chr17 71556012 71556333 + 2 NA Intergenic MIR|SINE|MIR -353993 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 208-28 chr10 87973974 87974116 + 2 NA Intergenic Intergenic 110420 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 408-92 chr12 127873626 127873893 + 2 NA Intergenic Intergenic -7858 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 401-237 chr4 107224091 107224487 + 2 NA Intergenic Intergenic -187976 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 566-64 chr17 10966529 10966900 + 2 NA Intergenic Intergenic -128627 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 217-52 chr10 99665285 99665443 + 2 NA intron (NM_001349962, intron 4 of 13) MLT1L|LTR|ERVL-MaLR 5735 NM_001349963 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 380-75 chr11 98171109 98171361 + 2 NA Intergenic Intergenic -849714 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 521-81 chr14 50905707 50906210 + 2 NA TTS (NM_181533) TTS (NM_181533) 33798 NM_181533 145447 Hs.271896 NM_181533 ENSG00000131969 ABHD12B BEM46L3|C14orf29|c14_5314 abhydrolase domain containing 12B protein-coding 345-67 chr10 64710820 64711141 + 2 NA Intergenic Intergenic -114548 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 335-537 chr8 90370105 90370305 + 2 NA intron (NR_051989, intron 3 of 3) intron (NR_051989, intron 3 of 3) 148717 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 188-111 chr2 197177699 197177858 + 2 NA intron (NM_153697, intron 2 of 9) L1ME4a|LINE|L1 -20213 NR_135584 101927596 NR_135584 ENSG00000231621 LOC101927596 - uncharacterized LOC101927596 ncRNA 546-211 chr6 141191005 141191404 + 2 NA Intergenic L1MA1|LINE|L1 507390 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 200-38 chr10 113860613 113860811 + 2 NA intron (NM_198514, intron 2 of 10) L1M4c|LINE|L1 6051 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 288-145 chr16 26169131 26169308 + 2 NA Intergenic Intergenic 143982 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 391-283 chr5 25233085 25233450 + 2 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 42314 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 356-276 chr2 220529895 220530161 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -623463 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 268-311 chr5 65928714 65928914 + 2 NA intron (NM_001253697, intron 1 of 25) intron (NM_001253697, intron 1 of 25) 2239 NM_001253697 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 281-116 chr14 59731452 59731668 + 2 NA intron (NM_021136, intron 2 of 8) MLT1J1|LTR|ERVL-MaLR -84540 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 294-152 chr16 59084337 59084573 + 2 NA Intergenic L1ME1|LINE|L1 -350139 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 444-210 chr5 155662313 155662729 + 2 NA Intergenic Intergenic 648766 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 303-145 chr15 84005789 84006031 + 2 NA intron (NM_207517, intron 23 of 29) intron (NM_207517, intron 23 of 29) -74277 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 251-116 chr15 97021638 97021837 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 238302 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 295-215 chr2 71892960 71893173 + 2 NA Intergenic Intergenic 254796 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 285-156 chr17 83144100 83144358 + 2 NA Intergenic Intergenic 63083 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 359-376 chr4 156994747 156994995 + 2 NA Intergenic L2c|LINE|L2 -23072 NM_016205 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 530-282 chrX 56022607 56023050 + 2 NA intron (NM_001324104, intron 2 of 6) L1M4|LINE|L1 114543 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 325-300 chr20 4366694 4366993 + 2 NA Intergenic L1MC1|LINE|L1 -117556 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 289-147 chr15 47562201 47562378 + 2 NA intron (NM_001198999, intron 3 of 19) L1MB8|LINE|L1 -155216 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 175-100 chr3 40391738 40391868 + 2 NA non-coding (NR_040100, exon 4 of 4) non-coding (NR_040100, exon 4 of 4) 4619 NM_001291961 956 Hs.441145 NM_001248 ENSG00000168032 ENTPD3 CD39L3|HB6|NTPDase-3 ectonucleoside triphosphate diphosphohydrolase 3 protein-coding 369-94 chr13 37423309 37423618 + 2 NA Intergenic L1M1|LINE|L1 61321 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 478-70 chr13 78334716 78335068 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -261230 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 318-61 chr10 41909427 41909613 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 458525 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 302-497 chrX 75180232 75180518 + 2 NA intron (NM_001363821, intron 3 of 9) L1PB1|LINE|L1 24006 NM_001363821 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 238-384 chr8 83532644 83532837 + 2 NA Intergenic Intergenic 128982 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 301-90 chr12 29134173 29134393 + 2 NA Intergenic LTR25-int|LTR|ERV1 -14995 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 236-28 chr1 213850129 213850360 + 2 NA intron (NR_037850, intron 4 of 5) L1ME1|LINE|L1 -74505 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 334-317 chr21 24991740 24992064 + 2 NA intron (NR_046198, intron 2 of 3) HUERS-P3-int|LTR|ERV1 151352 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 353-532 chr8 101631105 101631350 + 2 NA intron (NM_024915, intron 9 of 15) intron (NM_024915, intron 9 of 15) 138788 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 138-99 chr9 29841510 29841631 + 2 NA Intergenic L1M4b|LINE|L1 566884 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 299-464 chr8 121138626 121138824 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -326679 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 303-290 chr3 103231221 103231428 + 2 NA Intergenic Intergenic 292792 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 352-536 chr8 95595135 95595429 + 2 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -326081 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 229-72 chr11 100508308 100508450 + 2 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -178909 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 532-48 chr12 59901760 59902238 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 212629 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 247-130 chr15 73536594 73536754 + 2 NA intron (NM_001348772, intron 2 of 4) intron (NM_001348772, intron 2 of 4) 32869 NR_103844 101241892 Hs.656678 NR_103844 ENSG00000281183 NPTN-IT1 lncRNA-LET NPTN intronic transcript 1 ncRNA 367-286 chr3 90561231 90561589 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1453789 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 431-235 chr5 156870038 156870383 + 2 NA Intergenic MIRb|SINE|MIR 19915 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 423-129 chr2 56671544 56671850 + 2 NA Intergenic L1PA15-16|LINE|L1 -485927 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 347-139 chr14 83936422 83936716 + 2 NA Intergenic Intergenic 1293937 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 264-427 chr8 119114269 119114464 + 2 NA Intergenic Intergenic -45584 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 166-127 chrX 107343481 107343624 + 2 NA Intergenic Intergenic 136920 NM_001169154 139212 Hs.128836 NM_173494 ENSG00000080572 PIH1D3 CILD36|CXorf41|DNAAF6|NYSAR97|TWISTER PIH1 domain containing 3 protein-coding 165-39 chr15 82685591 82685726 + 2 NA 3' UTR (NM_001348440, exon 5 of 5) 3' UTR (NM_001348440, exon 5 of 5) -22983 NM_001348441 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 EIEE48|NAPTB adaptor related protein complex 3 subunit beta 2 protein-coding 324-342 chr3 35365686 35365940 + 2 NA intron (NR_110817, intron 1 of 3) L1MEf|LINE|L1 28210 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 388-377 chrX 80957736 80958090 + 2 NA Intergenic MER57A-int|LTR|ERV1 -148036 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 325-381 chr4 30317444 30317743 + 2 NA Intergenic Intergenic -402776 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 441-107 chr19 31712807 31713118 + 2 NA Intergenic Intergenic 120681 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 285-340 chr5 77801857 77802094 + 2 NA Intergenic L1MC1|LINE|L1 -25614 NM_004607 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 334-414 chr5 28026388 28026651 + 2 NA Intergenic Intergenic 261146 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 150-28 chr12 71140400 71140543 + 2 NA intron (NM_001369760, intron 2 of 7) L1ME2|LINE|L1 17338 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 485-157 chr2 213335674 213336019 + 2 NA intron (NR_047660, intron 4 of 14) intron (NR_047660, intron 4 of 14) 51382 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 328-159 chr14 75186951 75187238 + 2 NA Intergenic Intergenic -10482 NM_006827 10972 Hs.74137 NM_006827 ENSG00000170348 TMED10 P24(DELTA)|S31I125|S31III125|TMP21|Tmp-21-I|p23|p24d1 transmembrane p24 trafficking protein 10 protein-coding 270-147 chr16 78750907 78751138 + 2 NA intron (NM_001291997, intron 7 of 7) L1PA17|LINE|L1 651368 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 398-286 chr5 176603867 176604247 + 2 NA intron (NM_052899, intron 1 of 1) L2a|LINE|L2 6099 NM_052899 114787 Hs.150549 NM_052899 ENSG00000169258 GPRIN1 GRIN1 G protein regulated inducer of neurite outgrowth 1 protein-coding 357-67 chr11 73024243 73024461 + 2 NA intron (NM_014824, intron 3 of 19) L1MC3|LINE|L1 117966 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 434-115 chr18 7505396 7505652 + 2 NA Intergenic Intergenic -44518 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 348-93 chr11 97473015 97473257 + 2 NA Intergenic L1M1|LINE|L1 964711 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 375-117 chr13 97122608 97122893 + 2 NA Intergenic Intergenic 56872 NR_125725 103625683 Hs.679591 NR_125725 ENSG00000233124 LINC00456 - long intergenic non-protein coding RNA 456 ncRNA 830-43 chr5 31739321 31739899 + 2 NA intron (NM_178140, intron 1 of 24) HSMAR2|DNA|TcMar-Mariner 100479 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 345-242 chr2 19460124 19460346 + 2 NA Intergenic AluJb|SINE|Alu -101612 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 278-90 chr13 66699520 66699687 + 2 NA intron (NM_020403, intron 2 of 3) MLT1C|LTR|ERVL-MaLR -125566 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 337-204 chr17 63067310 63067538 + 2 NA intron (NM_025185, intron 2 of 25) intron (NM_025185, intron 2 of 25) 101189 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 238-138 chr17 55899660 55899817 + 2 NA Intergenic MIRb|SINE|MIR 148633 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 257-432 chr9 24541376 24541613 + 2 NA Intergenic L1MC4a|LINE|L1 4182 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 218-55 chr11 82373611 82373770 + 2 NA intron (NR_120571, intron 1 of 7) Charlie8|DNA|hAT-Charlie 30223 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 245-100 chr12 62551555 62551777 + 2 NA intron (NM_001278469, intron 23 of 35) Tigger1|DNA|TcMar-Tigger 51768 NR_121682 283416 Hs.375881 NM_175895 ENSG00000221949 LINC01465 C12orf61 long intergenic non-protein coding RNA 1465 ncRNA 369-157 chr17 41138616 41138840 + 2 NA TTS (NM_030976) TTS (NM_030976) 1759 NM_030976 81871 Hs.307014 NM_030976 ENSG00000198090 KRTAP4-6 KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 keratin associated protein 4-6 protein-coding 206-81 chr15 88867837 88868021 + 2 NA intron (NM_013227, intron 13 of 17) intron (NM_013227, intron 13 of 17) 27615 NM_178232 145864 Hs.447530 NM_178232 ENSG00000140511 HAPLN3 EXLD1|HsT19883 hyaluronan and proteoglycan link protein 3 protein-coding 341-26 chr1 101612751 101612947 + 2 NA Intergenic L1MD1|LINE|L1 234231 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 249-453 chr9 115135821 115135982 + 2 NA intron (NR_110950, intron 1 of 5) intron (NR_110950, intron 1 of 5) 2508 NR_110950 101928748 Hs.650491 NR_110950 ENSG00000236461 LOC101928748 - uncharacterized LOC101928748 ncRNA 356-42 chr10 11362379 11362676 + 2 NA Intergenic Intergenic -17853 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 437-38 chr11 24442614 24442910 + 2 NA Intergenic L1MEd|LINE|L1 -54291 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 292-11 chr1 84577977 84578125 + 2 NA Intergenic AluJo|SINE|Alu -3611 NM_004388 1486 Hs.513557 NM_004388 ENSG00000117151 CTBS CTB chitobiase protein-coding 162-9 chr1 181150250 181150384 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -24167 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 318-405 chr4 77333235 77333513 + 2 NA Intergenic HERVIP10B3-int|LTR|ERV1 176167 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 393-45 chr10 106096625 106096913 + 2 NA Intergenic L1MEg|LINE|L1 -43396 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 187-166 chr7 118959414 118959558 + 2 NA Intergenic L1MCc|LINE|L1 734782 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 327-379 chr4 171096388 171096649 + 2 NA Intergenic Intergenic 55916 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 572-36 chr12 16316909 16317292 + 2 NA Intergenic Intergenic -30042 NM_145792 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 645-102 chr5 133544792 133545294 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 67498 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 431-100 chr16 79197773 79198066 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 402818 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 481-133 chr2 23080357 23080659 + 2 NA Intergenic L1M4b|LINE|L1 -304671 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 262-248 chr20 33683821 33684014 + 2 NA intron (NM_005225, intron 1 of 6) intron (NM_005225, intron 1 of 6) 2468 NM_005225 1869 Hs.654393 NM_005225 ENSG00000101412 E2F1 E2F-1|RBAP1|RBBP3|RBP3 E2F transcription factor 1 protein-coding 278-400 chr7 64891105 64891280 + 2 NA Intergenic MIRb|SINE|MIR -12050 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 261-161 chr18 59417248 59417502 + 2 NA Intergenic AluSx|SINE|Alu -58110 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 257-49 chr10 106282683 106282879 + 2 NA Intergenic L1PA16|LINE|L1 142616 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 351-396 chr5 136314943 136315276 + 2 NA intron (NR_133682, intron 3 of 3) intron (NR_133682, intron 3 of 3) -13253 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 204-91 chr14 69202591 69202789 + 2 NA intron (NM_001193363, intron 1 of 8) intron (NM_001193363, intron 1 of 8) 10924 NM_001193363 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 265-400 chr8 118516206 118516405 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -104696 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 370-137 chr14 37507501 37507798 + 2 NA intron (NM_138731, intron 13 of 13) L1PA6|LINE|L1 87600 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 391-304 chr6 52069986 52070277 + 2 NA intron (NM_138694, intron 10 of 66) intron (NM_138694, intron 10 of 66) 17482 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 239-170 chr2 53026548 53026738 + 2 NA Intergenic MIR3|SINE|MIR -324028 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 133-74 chr7 36406570 36406661 + 2 NA intron (NM_001284302, intron 4 of 22) intron (NM_001284302, intron 4 of 22) -16258 NM_001100425 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 232-295 chr5 25610086 25610292 + 2 NA Intergenic MER52-int|LTR|ERV1 419236 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 472-305 chr8 5357520 5357915 + 2 NA Intergenic Intergenic -362803 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 310-101 chr12 40083336 40083510 + 2 NA intron (NM_052885, intron 1 of 9) L1MEf|LINE|L1 22658 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 461-100 chr17 13051799 13052191 + 2 NA Intergenic Intergenic -33931 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 255-438 chr8 126673835 126674000 + 2 NA Intergenic MIRb|SINE|MIR -115439 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 250-62 chr11 26432624 26432807 + 2 NA intron (NM_031418, intron 1 of 26) L1PREC2|LINE|L1 -41187 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 175-155 chr7 125169453 125169588 + 2 NA Intergenic Intergenic -15049 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 416-263 chr5 5010816 5011195 + 2 NA Intergenic Intergenic -23354 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 318-47 chr1 240556363 240556583 + 2 NA intron (NM_022469, intron 1 of 1) HAL1|LINE|L1 55682 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 504-185 chr4 63019976 63020324 + 2 NA Intergenic Intergenic -858385 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 286-371 chr5 151920813 151921065 + 2 NA intron (NM_000171, intron 1 of 8) intron (NM_000171, intron 1 of 8) 3912 NM_001146040 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 473-63 chr12 79770312 79770728 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie -79423 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 557-106 chr2 123572312 123572685 + 2 NA Intergenic Intergenic 452676 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 612-122 chr6 88024590 88025038 + 2 NA Intergenic Intergenic -23027 NM_030960 81833 Hs.161241 NM_030960 ENSG00000118434 SPACA1 SAMP32 sperm acrosome associated 1 protein-coding 394-332 chr8 115277836 115278068 + 2 NA Intergenic L1MB1|LINE|L1 390061 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 242-92 chr13 47563392 47563583 + 2 NA Intergenic Intergenic 369135 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 190-50 chr13 109558897 109559024 + 2 NA Intergenic L1MA8|LINE|L1 158264 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 357-182 chr2 8244754 8245022 + 2 NA intron (NR_152741, intron 8 of 9) intron (NR_152741, intron 8 of 9) 83531 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 265-247 chr3 127872631 127872888 + 2 NA Intergenic Intergenic -42473 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 390-160 chr19 6977415 6977627 + 2 NA intron (NR_024075, intron 6 of 15) intron (NR_024075, intron 6 of 15) 13325 NR_024075 326342 Hs.688043 NM_001080498 ENSG00000268758 ADGRE4P EMR4|EMR4P|FIRE|GPR127|PGR16 adhesion G protein-coupled receptor E4, pseudogene pseudo 513-287 chr8 123894478 123894775 + 2 NA intron (NM_001039112, intron 1 of 40) L1MC4|LINE|L1 42639 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 396-152 chr2 20152254 20152563 + 2 NA Intergenic L1MB4|LINE|L1 72722 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 331-13 chr1 92403227 92403415 + 2 NA Intergenic L1MEc|LINE|L1 80633 NM_001127215 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 539-100 chr19 43882097 43882454 + 2 NA Intergenic L1MEc|LINE|L1 -2139 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 255-434 chr8 121001832 121001969 + 2 NA Intergenic Intergenic -189854 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 260-425 chr8 40245696 40245934 + 2 NA Intergenic L1MA4|LINE|L1 92333 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 842-17 chr19 27359222 27359906 + 2 NA Intergenic ALR/Alpha|Satellite|centr -433867 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 320-455 chr5 117361626 117361891 + 2 NA Intergenic (TAATATA)n|Simple_repeat|Simple_repeat -53754 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 401-305 chr7 104753433 104753738 + 2 NA intron (NM_199000, intron 2 of 2) L1ME5|LINE|L1 50507 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 578-177 chr8 104582859 104583281 + 2 NA intron (NM_013437, intron 1 of 6) L2b|LINE|L2 5954 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 364-93 chr11 81718184 81718506 + 2 NA Intergenic L1MA3|LINE|L1 172491 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 289-207 chr2 8339055 8339241 + 2 NA Intergenic Intergenic -10729 NR_034135 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 350-543 chr8 134235800 134235995 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 349401 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 475-218 chr5 23260314 23260625 + 2 NA Intergenic Intergenic -247140 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 610-81 chr2 27950441 27950877 + 2 NA intron (NM_199193, intron 4 of 13) L1MEf|LINE|L1 -45708 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 280-452 chrX 43232782 43233052 + 2 NA Intergenic Intergenic 55923 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 534-200 chr5 112511537 112511946 + 2 NA Intergenic LTR24C|LTR|ERV1 92158 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 409-157 chr2 188993175 188993490 + 2 NA intron (NM_000090, intron 15 of 50) intron (NM_000090, intron 15 of 50) -2298 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 301-347 chr5 25113163 25113403 + 2 NA Intergenic L1PREC2|LINE|L1 77373 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 518-48 chr10 129568522 129568970 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 101505 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 324-210 chr16 76775785 76775981 + 2 NA Intergenic Intergenic -93053 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 333-566 chr8 65017399 65017572 + 2 NA Intergenic Intergenic 162855 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 640-98 chr4 96188915 96189348 + 2 NA Intergenic L1MC1|LINE|L1 -121572 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 402-369 chrX 56867777 56868111 + 2 NA Intergenic PRIMA41-int|LTR|ERV1 127597 NR_027139 169981 Hs.522672 NM_001010862 ENSG00000204271 SPIN3 SPIN-3|TDRD27|bA445O16.1 spindlin family member 3 protein-coding 372-218 chr2 31551506 31551715 + 2 NA intron (NM_000348, intron 1 of 4) MER47A|DNA|TcMar-Tigger 29328 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 520-14 chr1 118759710 118760128 + 2 NA Intergenic L1MA7|LINE|L1 228424 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 430-205 chr4 16814013 16814323 + 2 NA intron (NM_001304435, intron 1 of 7) AluY|SINE|Alu 84477 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 445-79 chr15 66645617 66645937 + 2 NA intron (NR_110372, intron 1 of 4) AluSx1|SINE|Alu -56459 NM_005585 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 604-33 chr11 122537549 122538101 + 2 NA Intergenic L1M2|LINE|L1 -114954 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 160-70 chr3 96119234 96119318 + 2 NA Intergenic Intergenic -240688 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 335-171 chr15 51839499 51839732 + 2 NA intron (NM_014547, intron 1 of 9) AluJo|SINE|Alu 9962 NM_014547 29766 Hs.4998 NM_014547 ENSG00000138594 TMOD3 UTMOD tropomodulin 3 protein-coding 330-530 chr8 122406461 122406636 + 2 NA Intergenic Intergenic 162096 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 280-348 chr6 55003216 55003440 + 2 NA Intergenic L2a|LINE|L2 -103132 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 488-154 chr2 205868339 205868693 + 2 NA Intergenic Intergenic 186015 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 538-44 chr11 95285440 95285786 + 2 NA Intergenic L2c|LINE|L2 -53138 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 445-4 chr1 61884548 61884954 + 2 NA intron (NM_001350145, intron 22 of 43) L2a|LINE|L2 38676 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 257-166 chr19 24345094 24345345 + 2 NA Intergenic ALR/Alpha|Satellite|centr -181772 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 342-362 chr4 74018417 74018626 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -19844 NM_002994 6374 Hs.89714 NM_002994 ENSG00000163735 CXCL5 ENA-78|SCYB5 C-X-C motif chemokine ligand 5 protein-coding 212-319 chr8 35085855 35086029 + 2 NA Intergenic L1MEf|LINE|L1 -149533 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 307-532 chrX 83299045 83299298 + 2 NA Intergenic Intergenic -209119 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 123-35 chr4 43711653 43711732 + 2 NA Intergenic Intergenic -219149 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 542-240 chr9 98244929 98245443 + 2 NA intron (NR_051978, intron 1 of 11) AluY|SINE|Alu 10463 NM_018421 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 528-236 chr7 52080473 52080809 + 2 NA Intergenic Intergenic -687385 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 221-212 chr4 43541896 43542071 + 2 NA Intergenic Intergenic -49440 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 273-415 chr7 16358647 16358856 + 2 NA intron (NM_001101417, intron 2 of 8) intron (NM_001101417, intron 2 of 8) 62787 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 423-277 chr7 98576406 98576662 + 2 NA Intergenic L1MCc|LINE|L1 -40751 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 348-97 chr11 108981238 108981553 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 316326 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 197-136 chr3 76331508 76331671 + 2 NA Intergenic Intergenic -546040 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 243-194 chr2 25919617 25919823 + 2 NA Intergenic L1MC4|LINE|L1 -41233 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 298-153 chr16 60964217 60964443 + 2 NA Intergenic Intergenic 91436 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 442-44 chr11 54922015 54922370 + 2 NA Intergenic ALR/Alpha|Satellite|centr 215360 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 521-216 chr6 63238247 63238615 + 2 NA Intergenic Intergenic 81546 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 502-14 chr1 165463326 165463740 + 2 NA Intergenic HAL1ME|LINE|L1 -18178 NM_001256570 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 233-128 chr17 58938197 58938413 + 2 NA intron (NM_014906, intron 1 of 6) MIR3|SINE|MIR 168575 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 292-306 chr4 21078618 21078867 + 2 NA intron (NM_147182, intron 2 of 8) LTR79|LTR|ERVL -94733 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 520-37 chr10 76452771 76453148 + 2 NA intron (NM_001305581, intron 6 of 6) L2a|LINE|L2 -435085 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 137-15 chr11 127395283 127395395 + 2 NA Intergenic Intergenic 124269 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 240-353 chr5 80450648 80450815 + 2 NA intron (NR_146172, intron 12 of 20) intron (NR_146172, intron 12 of 20) -37369 NM_205548 167555 Hs.338182 NM_205548 ENSG00000152380 FAM151B UNQ9217 family with sequence similarity 151 member B protein-coding 252-75 chr11 88226000 88226171 + 2 NA Intergenic L1PB4|LINE|L1 49583 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 223-374 chrX 30901890 30902068 + 2 NA Intergenic Intergenic -12725 NM_152787 257397 Hs.188256 NM_152787 ENSG00000157625 TAB3 MAP3K7IP3|NAP1 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 protein-coding 320-340 chr3 35919301 35919563 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 174956 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 334-351 chr3 81922551 81922811 + 2 NA Intergenic Intergenic -63461 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 259-296 chr4 140950940 140951144 + 2 NA intron (NM_020724, intron 2 of 6) L2c|LINE|L2 182427 NM_020724 57484 Hs.659104 NM_020724 ENSG00000170153 RNF150 - ring finger protein 150 protein-coding 305-571 chrX 63308246 63308507 + 2 NA Intergenic L1M2|LINE|L1 42956 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 326-169 chr15 61299639 61299865 + 2 NA Intergenic L1MC1|LINE|L1 -70450 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 453-254 chr7 43434968 43435282 + 2 NA intron (NM_001287059, intron 7 of 27) intron (NM_001287059, intron 7 of 27) 87417 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 280-230 chr20 32044852 32045071 + 2 NA Intergenic L1MB8|LINE|L1 -7281 NM_001172133 3055 Hs.655210 NM_002110 ENSG00000101336 HCK JTK9|p59Hck|p61Hck HCK proto-oncogene, Src family tyrosine kinase protein-coding 476-10 chr1 99552929 99553293 + 2 NA intron (NR_031666, intron 2 of 4) intron (NR_031666, intron 2 of 4) -65307 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 327-50 chr10 56457626 56457805 + 2 NA Intergenic L1M2|LINE|L1 -96442 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 145-15 chr10 88535955 88536077 + 2 NA intron (NM_018363, intron 4 of 6) MIRb|SINE|MIR 47302 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 496-190 chr4 20918034 20918320 + 2 NA intron (NM_147182, intron 2 of 8) L3b|LINE|CR1 -35467 NM_025221 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 365-287 chr4 53136094 53136439 + 2 NA intron (NM_152540, intron 5 of 8) MIR1_Amn|SINE|MIR 229795 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 236-217 chr3 36684097 36684327 + 2 NA Intergenic L1M4|LINE|L1 55649 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 263-169 chr18 37950696 37950935 + 2 NA Intergenic Intergenic 293680 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 158-16 chr10 95091811 95091903 + 2 NA Intergenic Intergenic -22360 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 461-238 chr6 125683691 125684058 + 2 NA intron (NR_038906, intron 3 of 3) intron (NR_038906, intron 3 of 3) 9521 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 387-340 chr7 40879190 40879464 + 2 NA Intergenic L1MC5a|LINE|L1 100612 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 284-316 chr5 42128187 42128360 + 2 NA Intergenic Kanga1c|DNA|TcMar-Tc2 47072 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 334-109 chr12 46737343 46737555 + 2 NA Intergenic L1PA6|LINE|L1 88548 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 300-340 chr4 149474032 149474285 + 2 NA intron (NM_001363507, intron 12 of 13) intron (NM_001363507, intron 12 of 13) 319863 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 345-509 chr8 25644674 25644881 + 2 NA Intergenic Intergenic 185544 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 213-127 chr2 14882653 14882821 + 2 NA Intergenic Intergenic 250020 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 367-312 chr4 12922626 12922958 + 2 NA Intergenic Intergenic 561548 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 447-232 chr6 94008991 94009418 + 2 NA Intergenic L1MA2|LINE|L1 290901 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 367-219 chr2 133549205 133549439 + 2 NA intron (NM_207481, intron 2 of 17) L1PA2|LINE|L1 19141 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 609-101 chr5 74372068 74372452 + 2 NA intron (NR_126354, intron 2 of 2) intron (NR_126354, intron 2 of 2) 49774 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 201-50 chr11 92931851 92931981 + 2 NA Intergenic Intergenic -16288 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 501-32 chr10 111451561 111451952 + 2 NA Intergenic Intergenic 337465 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 308-146 chr14 66134614 66134773 + 2 NA Intergenic Intergenic -351678 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 524-188 chr5 3784165 3784638 + 2 NA Intergenic Intergenic 188569 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 569-8 chr1 108588933 108589390 + 2 NA intron (NM_001010883, intron 1 of 10) L2|LINE|L2 29061 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 461-302 chrX 138696843 138697244 + 2 NA intron (NM_033642, intron 3 of 4) intron (NM_033642, intron 3 of 4) 14674 NM_004114 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 309-404 chr4 100062704 100062938 + 2 NA Intergenic L2c|LINE|L2 112327 NR_125923 256880 Hs.448554 NR_002799 ENSG00000245322 LOC256880 - uncharacterized LOC256880 ncRNA 386-32 chr10 43497436 43497680 + 2 NA Intergenic L2a|LINE|L2 60447 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 389-261 chr4 54705958 54706239 + 2 NA intron (NM_000222, intron 5 of 20) intron (NM_000222, intron 5 of 20) 48170 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 276-234 chr2 98188237 98188393 + 2 NA intron (NM_001345864, intron 4 of 21) L1MA5|LINE|L1 38782 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 245-31 chr10 14234434 14234613 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 96361 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 574-68 chr2 33892951 33893311 + 2 NA intron (NR_126403, intron 2 of 5) MIRc|SINE|MIR -164914 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 331-498 chr7 53037278 53037455 + 2 NA TTS (NM_182595) TTS (NM_182595) 1733 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 260-156 chr16 3240086 3240287 + 2 NA Intergenic L1MB7|LINE|L1 -5028 NM_198087 7752 Hs.632222 NM_003454 ENSG00000010539 ZNF200 - zinc finger protein 200 protein-coding 366-305 chr4 49110653 49110907 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 124138 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 454-309 chr8 78412392 78412772 + 2 NA Intergenic Intergenic -103758 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 340-457 chr5 85978045 85978375 + 2 NA Intergenic Intergenic -304234 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 461-81 chr14 86550421 86550772 + 2 NA Intergenic L1MEd|LINE|L1 -355182 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 280-298 chr4 105802464 105802718 + 2 NA intron (NM_001370181, intron 5 of 11) L1M6|LINE|L1 24581 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 544-227 chr8 107637875 107638264 + 2 NA Intergenic Intergenic -140151 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 410-60 chr11 109356547 109356874 + 2 NA Intergenic Intergenic -65480 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 176-126 chr7 12278549 12278673 + 2 NA Intergenic L1MA4A|LINE|L1 67317 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 234-283 chr4 113478935 113479129 + 2 NA intron (NM_001221, intron 14 of 18) intron (NM_001221, intron 14 of 18) 186193 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 419-297 chr8 119189507 119189773 + 2 NA Intergenic Intergenic -18723 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 237-216 chr21 16370775 16370971 + 2 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -48330 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 339-89 chr11 21537222 21537430 + 2 NA intron (NM_001288713, intron 17 of 20) L2a|LINE|L2 -655759 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 452-182 chr4 34071759 34072103 + 2 NA Intergenic Intergenic -32038 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 818-18 chr13 53243244 53243867 + 2 NA Intergenic Intergenic -91655 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 128-30 chr2 100112054 100112175 + 2 NA intron (NM_002285, intron 1 of 23) intron (NM_002285, intron 1 of 23) -6531 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 347-383 chr5 28153855 28154123 + 2 NA Intergenic Intergenic 133676 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 537-162 chr4 11093618 11093974 + 2 NA Intergenic L1ME1|LINE|L1 -275031 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 451-126 chr20 7730292 7730657 + 2 NA Intergenic L1ME3B|LINE|L1 209984 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 329-582 chr8 107362429 107362703 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -26051 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 412-270 chr5 178665309 178665607 + 2 NA Intergenic AluSc|SINE|Alu -38408 NM_020666 57396 Hs.406557 NM_020666 ENSG00000113240 CLK4 - CDC like kinase 4 protein-coding 441-267 chr8 122458751 122459072 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 109733 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 131-64 chr5 124922645 124922738 + 2 NA Intergenic Intergenic -114140 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 216-15 chr1 105847624 105847800 + 2 NA Intergenic L2|LINE|L2 180541 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 472-107 chr15 94003027 94003407 + 2 NA intron (NR_120320, intron 2 of 8) (AT)n|Simple_repeat|Simple_repeat 102516 NR_120323 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 341-314 chr22 27618969 27619256 + 2 NA Intergenic Intergenic 182644 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 252-451 chr9 98437583 98437759 + 2 NA intron (NM_005458, intron 7 of 18) (CCAT)n|Simple_repeat|Simple_repeat -182022 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 533-58 chr15 53826560 53826981 + 2 NA Intergenic Intergenic -63892 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 342-69 chr10 66115032 66115263 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 543722 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 393-219 chr3 82643883 82644219 + 2 NA Intergenic MER52-int|LTR|ERV1 657909 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 389-60 chr11 37265792 37266067 + 2 NA Intergenic Intergenic -667650 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 223-336 chr8 46888283 46888467 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 47489 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 197-154 chr4 101579485 101579635 + 2 NA Intergenic L1M2|LINE|L1 -211047 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 540-181 chr5 167376803 167377292 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -196612 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 182-36 chr12 13595139 13595303 + 2 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -218476 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 312-135 chr14 35446666 35446940 + 2 NA Intergenic Intergenic -42049 NM_020529 4792 Hs.81328 NM_020529 ENSG00000100906 NFKBIA EDAID2|IKBA|MAD-3|NFKBI NFKB inhibitor alpha protein-coding 571-117 chr3 178324356 178324754 + 2 NA Intergenic Intergenic -94646 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 146-19 chr12 8103999 8104136 + 2 NA Intergenic Intergenic -19565 NM_016184 50856 Hs.504657 NM_016184 ENSG00000111729 CLEC4A CD367|CLECSF6|DCIR|DDB27|HDCGC13P|LLIR C-type lectin domain family 4 member A protein-coding 140-85 chrX 64234679 64234762 + 2 NA Intergenic L1MD|LINE|L1 -4113 NM_130388 142689 Hs.56281 NM_130388 ENSG00000198881 ASB12 - ankyrin repeat and SOCS box containing 12 protein-coding 250-116 chr14 39495098 39495297 + 2 NA Intergenic AluSg|SINE|Alu -62697 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 462-145 chr2 139138360 139138767 + 2 NA Intergenic Intergenic 241239 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 359-385 chr5 32978912 32979119 + 2 NA Intergenic L1MEc|LINE|L1 31572 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 860-27 chr2 114886085 114886736 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -52862 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 328-198 chr16 73513547 73513768 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 126852 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 564-115 chr21 40804405 40804932 + 2 NA intron (NR_073202, intron 1 of 32) L2|LINE|L2 42490 NM_001271534 1826 Hs.160418 NM_001389 ENSG00000171587 DSCAM CHD2|CHD2-42|CHD2-52 DS cell adhesion molecule protein-coding 338-481 chr6 152018745 152019008 + 2 NA intron (NM_001122741, intron 6 of 8) intron (NM_001122741, intron 6 of 8) 149411 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 221-121 chr18 13984358 13984564 + 2 NA Intergenic Intergenic -68754 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 551-144 chr4 187918611 187919037 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -76947 NM_174900 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 155-72 chr4 57026314 57026440 + 2 NA intron (NM_001303269, intron 24 of 25) L1MC5|LINE|L1 47481 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 363-354 chr5 35343231 35343563 + 2 NA Intergenic Intergenic -112910 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 454-85 chr13 84019391 84019665 + 2 NA Intergenic L1ME3|LINE|L1 -121074 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 188-107 chr2 140914284 140914455 + 2 NA intron (NM_018557, intron 21 of 90) intron (NM_018557, intron 21 of 90) -327684 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 225-362 chr8 103340164 103340341 + 2 NA Intergenic Intergenic 31274 NR_145795 109623480 NR_145795 SNORD173 - small nucleolar RNA, C/D box 173 snoRNA 372-398 chr5 43969565 43969772 + 2 NA Intergenic L1P1|LINE|L1 -366438 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 306-299 chr3 20884331 20884497 + 2 NA Intergenic Intergenic -521312 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 302-222 chr2 122807198 122807464 + 2 NA Intergenic Intergenic 266150 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 377-226 chr2 155504176 155504455 + 2 NA Intergenic L1PA16|LINE|L1 750616 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 311-134 chr14 47909363 47909618 + 2 NA Intergenic Intergenic -114476 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 324-252 chr2 39091857 39092172 + 2 NA intron (NM_005633, intron 1 of 22) L2a|LINE|L2 28449 NM_005633 6654 Hs.709893 NM_005633 ENSG00000115904 SOS1 GF1|GGF1|GINGF|HGF|NS4|SOS-1 SOS Ras/Rac guanine nucleotide exchange factor 1 protein-coding 343-9 chr1 49405321 49405617 + 2 NA intron (NR_046839, intron 3 of 3) MIR|SINE|MIR 66616 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 405-341 chr9 29143155 29143511 + 2 NA intron (NM_001354574, intron 1 of 5) L1M4|LINE|L1 68966 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 192-191 chr7 31359881 31360051 + 2 NA Intergenic Intergenic -19240 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 341-288 chr20 14565747 14565950 + 2 NA intron (NR_104193, intron 1 of 4) intron (NR_104193, intron 1 of 4) 11464 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 506-254 chr6 108423217 108423637 + 2 NA intron (NM_145315, intron 7 of 12) intron (NM_145315, intron 7 of 12) 128373 NM_145315 246269 Hs.259666 NM_145315 ENSG00000135537 AFG1L AFG1|LACE1|c222389 AFG1 like ATPase protein-coding 303-152 chr16 6279812 6280063 + 2 NA intron (NM_018723, intron 1 of 15) CR1-16_AMi|LINE|CR1 260234 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 474-177 chr3 20870667 20871079 + 2 NA Intergenic Intergenic 528405 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 114-53 chr5 132165258 132165365 + 2 NA Intergenic L1MB7|LINE|L1 -19565 NR_047470 100861518 Hs.519568 NR_047470 ENSG00000237714 P4HA2-AS1 - P4HA2 antisense RNA 1 ncRNA 253-69 chr11 32075979 32076169 + 2 NA Intergenic L1MC5a|LINE|L1 -15000 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 450-207 chr3 130607963 130608277 + 2 NA intron (NM_001102608, intron 20 of 35) MLT1A0|LTR|ERVL-MaLR 47786 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 369-75 chr12 15131292 15131599 + 2 NA intron (NM_032918, intron 2 of 4) intron (NM_032918, intron 2 of 4) -20478 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 339-403 chr4 54253129 54253386 + 2 NA intron (NM_001347828, intron 2 of 23) intron (NM_001347828, intron 2 of 23) 19297 NM_001347830 5156 Hs.74615 NM_006206 ENSG00000134853 PDGFRA CD140A|PDGFR-2|PDGFR2 platelet derived growth factor receptor alpha protein-coding 215-105 chr16 74179621 74179788 + 2 NA Intergenic L1M5|LINE|L1 35817 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 182-18 chr10 15990473 15990616 + 2 NA Intergenic Intergenic -130011 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 337-217 chr18 9175094 9175376 + 2 NA intron (NM_001204056, intron 1 of 11) intron (NM_001204056, intron 1 of 11) 37672 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 269-146 chr16 51741856 51742048 + 2 NA Intergenic MER92-int|LTR|ERV1 -20567 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 353-491 chr7 71893900 71894120 + 2 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 443381 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 181-25 chr11 30166803 30166968 + 2 NA Intergenic Intergenic -64129 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 465-188 chr3 151889343 151889672 + 2 NA intron (NR_110203, intron 1 of 2) intron (NR_110203, intron 1 of 2) 15864 NM_033050 56670 Hs.133181 NM_033050 ENSG00000198829 SUCNR1 GPR91 succinate receptor 1 protein-coding 327-362 chr4 58453853 58454046 + 2 NA Intergenic Intergenic 82379 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 222-32 chr10 36348918 36349087 + 2 NA Intergenic L1MC5|LINE|L1 570700 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 154-29 chr13 90239760 90239888 + 2 NA Intergenic MIR|SINE|MIR 8642 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 648-87 chr3 58902812 58903217 + 2 NA intron (NR_147234, intron 5 of 10) L1MB5|LINE|L1 78543 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 536-236 chr8 120401050 120401356 + 2 NA intron (NM_014078, intron 6 of 6) L1PA11|LINE|L1 43947 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 353-341 chr3 127597270 127597609 + 2 NA promoter-TSS (NM_004526) promoter-TSS (NM_004526) 792 NM_001353004 131601 Hs.6418 NM_016372 ENSG00000163870 TPRA1 GPR175|TMEM227|TPRA40 transmembrane protein adipocyte associated 1 protein-coding 329-293 chr2 152240428 152240596 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -64749 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 604-168 chr8 126304767 126305174 + 2 NA Intergenic L1MEc|LINE|L1 -20525 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 346-407 chr5 146327113 146327437 + 2 NA Intergenic Intergenic -11564 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 303-104 chr13 47914298 47914550 + 2 NA Intergenic L1MC4a|LINE|L1 18198 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 441-154 chr3 27691770 27692046 + 2 NA Intergenic L1MA1|LINE|L1 30415 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 431-2 chr1 14467141 14467518 + 2 NA Intergenic L1M4|LINE|L1 -47356 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 575-119 chr3 96341171 96341635 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -18561 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 331-25 chr1 180863165 180863421 + 2 NA intron (NM_004736, intron 11 of 14) intron (NM_004736, intron 11 of 14) -49604 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 330-501 chr7 123174830 123175154 + 2 NA intron (NM_022444, intron 2 of 14) L2c|LINE|L2 24977 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 423-10 chr1 98341680 98341932 + 2 NA Intergenic Intergenic 131095 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 266-184 chr2 101784093 101784256 + 2 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 86467 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 197-76 chr17 62864599 62864771 + 2 NA Intergenic Intergenic 56183 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 460-66 chr12 66222506 66222825 + 2 NA intron (NM_007199, intron 6 of 11) L1MD|LINE|L1 -28417 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 385-130 chr17 16390050 16390354 + 2 NA Intergenic AluSp|SINE|Alu 8737 NM_001281717 7314 Hs.356190 NM_018955 ENSG00000170315 UBB HEL-S-50 ubiquitin B protein-coding 353-254 chr2 125380987 125381187 + 2 NA Intergenic Intergenic 736898 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 221-184 chr3 41614295 41614448 + 2 NA intron (NR_136342, intron 29 of 34) intron (NR_136342, intron 29 of 34) 347732 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 545-76 chr14 101173042 101173553 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 52441 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 336-295 chr2 166842505 166842746 + 2 NA Intergenic Intergenic -45862 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 200-109 chr18 10907690 10907837 + 2 NA intron (NM_022068, intron 4 of 51) intron (NM_022068, intron 4 of 51) -148114 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 327-402 chr5 79091913 79092186 + 2 NA Intergenic Intergenic -19760 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 314-213 chr16 76147462 76147741 + 2 NA Intergenic Intergenic -129800 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 295-172 chr16 83225080 83225300 + 2 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -234892 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 502-201 chr4 74956896 74957168 + 2 NA non-coding (NR_121617, exon 4 of 4) non-coding (NR_121617, exon 4 of 4) 13330 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 443-247 chr5 96588767 96589145 + 2 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -73081 NM_001042442 831 Hs.436186 NM_001750 ENSG00000153113 CAST BS-17|PLACK calpastatin protein-coding 338-539 chr8 77808573 77808796 + 2 NA Intergenic L1P4a|LINE|L1 357987 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 584-4 chr1 42079561 42079973 + 2 NA Intergenic L1MA4A|LINE|L1 -43833 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 217-173 chr2 71469865 71470024 + 2 NA intron (NM_001130985, intron 1 of 54) L2a|LINE|L2 3245 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 364-427 chr7 140069121 140069392 + 2 NA Intergenic L1M4|LINE|L1 -5535 NM_022750 64761 Hs.12646 NM_022750 ENSG00000059378 PARP12 ARTD12|MST109|MSTP109|ZC3H1|ZC3HDC1 poly(ADP-ribose) polymerase family member 12 protein-coding 200-168 chr3 13461573 13461682 + 2 NA Intergenic Intergenic 18426 NR_046690 100874101 Hs.535701 NR_046690 ENSG00000244502 HDAC11-AS1 - HDAC11 antisense RNA 1 ncRNA 577-17 chr1 165639672 165640242 + 2 NA intron (NM_004528, intron 1 of 5) intron (NM_004528, intron 1 of 5) 8723 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 421-256 chr6 38594554 38594878 + 2 NA intron (NM_001172418, intron 1 of 10) L1ME4b|LINE|L1 1351 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 229-377 chr8 34572699 34572888 + 2 NA Intergenic Intergenic -211128 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 468-263 chr5 127248644 127248933 + 2 NA Intergenic L1ME4a|LINE|L1 -41976 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 311-29 chr1 184466226 184466493 + 2 NA intron (NM_030806, intron 1 of 5) intron (NM_030806, intron 1 of 5) 79330 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 379-261 chr5 42149584 42149872 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 25617 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 311-189 chr16 86920740 86920947 + 2 NA Intergenic Intergenic -136941 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 136-7 chr10 44416264 44416371 + 2 NA Intergenic Intergenic -31220 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 337-382 chr4 29041295 29041479 + 2 NA Intergenic Intergenic 44603 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 791-6 chr1 191496089 191496674 + 2 NA Intergenic L2|LINE|L2 -267883 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 359-441 chr7 21675710 21675974 + 2 NA intron (NM_001277115, intron 30 of 81) L2a|LINE|L2 132803 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 219-220 chr21 30361099 30361283 + 2 NA Intergenic Intergenic 11080 NM_181621 337959 Hs.58152 NM_181621 ENSG00000182816 KRTAP13-2 KAP13-2 keratin associated protein 13-2 protein-coding 574-11 chr10 14678592 14679111 + 2 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) -74450 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 303-446 chr8 50775497 50775674 + 2 NA intron (NR_135797, intron 20 of 20) L1MDa|LINE|L1 611454 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 692 chr1 68827805 68828444 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -227774 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 389-70 chr11 113598202 113598562 + 2 NA Intergenic L1MEh|LINE|L1 107926 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 243-173 chr18 2205138 2205338 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 366267 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 314-425 chr4 62572806 62573091 + 2 NA Intergenic L2a|LINE|L2 -411183 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 151-88 chr8 128323923 128324024 + 2 NA Intergenic L2b|LINE|L2 173857 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 317-105 chr12 22940136 22940412 + 2 NA Intergenic L1MA9|LINE|L1 -235362 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 172-81 chr3 96103256 96103388 + 2 NA Intergenic Intergenic -256642 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 532-116 chr2 51366420 51366891 + 2 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 334054 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 211-62 chr12 49894661 49894799 + 2 NA intron (NM_012306, intron 5 of 11) intron (NM_012306, intron 5 of 11) 9170 NM_012306 23017 Hs.567424 NM_012306 ENSG00000135472 FAIM2 LFG|LFG2|NGP35|NMP35|TMBIM2 Fas apoptotic inhibitory molecule 2 protein-coding 302-38 chr10 19315977 19316208 + 2 NA intron (NM_001142308, intron 21 of 39) intron (NM_001142308, intron 21 of 39) 267291 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 233-59 chr11 69260591 69260742 + 2 NA Intergenic L1M5|LINE|L1 -33489 NM_001293291 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 441-147 chr21 14320444 14320854 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger 46850 NR_003088 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 157-21 chr10 87534455 87534559 + 2 NA intron (NM_001178118, intron 4 of 4) intron (NM_001178118, intron 4 of 4) 26674 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 697-56 chr4 59650255 59650833 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 636971 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 304-441 chr5 155536463 155536686 + 2 NA Intergenic MIRb|SINE|MIR 522819 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 345-97 chr11 97994207 97994525 + 2 NA Intergenic L1ME3A|LINE|L1 -1026583 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 192-41 chr11 92704586 92704765 + 2 NA intron (NM_001008781, intron 3 of 24) MLT1B|LTR|ERVL-MaLR 210953 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 395-98 chr14 71318509 71318873 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -1785 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 263-94 chr13 102977580 102977732 + 2 NA Intergenic Intergenic 88761 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 433-292 chr8 140019051 140019400 + 2 NA intron (NM_001160372, intron 18 of 22) L1ME2|LINE|L1 81310 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 501-285 chrX 74109621 74109983 + 2 NA intron (NR_028379, intron 5 of 6) L1MA4|LINE|L1 108659 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 158-69 chr22 27117213 27117317 + 2 NA Intergenic Intergenic -56747 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 511-154 chr21 19382803 19383109 + 2 NA Intergenic Intergenic 516799 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 375-382 chr7 62942385 62942651 + 2 NA Intergenic ALR/Alpha|Satellite|centr 361538 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 293-346 chr5 101532471 101532672 + 2 NA Intergenic Intergenic -629289 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 118-43 chr5 121103526 121103634 + 2 NA Intergenic Intergenic -218970 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 737-60 chr4 111127835 111128379 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -267460 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 450-62 chr12 12817546 12817917 + 2 NA intron (NM_201224, intron 2 of 10) intron (NM_201224, intron 2 of 10) 4385 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 455-275 chr8 82202089 82202372 + 2 NA Intergenic L1PA10|LINE|L1 -359944 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 360-125 chr14 66207517 66207861 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -278682 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 294-105 chr14 25634635 25634819 + 2 NA Intergenic Intergenic -584430 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 495-275 chrX 69656943 69657281 + 2 NA intron (NM_001005609, intron 1 of 7) L1PA16|LINE|L1 40999 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 376-150 chr18 38783447 38783789 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 838557 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 198-84 chr16 82245642 82245790 + 2 NA Intergenic Intergenic -75492 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 260-122 chr13 85971477 85971672 + 2 NA Intergenic Intergenic -172155 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 396-174 chr2 122618439 122618732 + 2 NA Intergenic L1M4|LINE|L1 454896 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 128-28 chr19 31106450 31106567 + 2 NA Intergenic Intergenic -61002 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 257-40 chr10 56876044 56876212 + 2 NA Intergenic Intergenic 428431 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 220-326 chr6 128705632 128705800 + 2 NA Intergenic Intergenic -177422 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 223-111 chr16 66158196 66158335 + 2 NA Intergenic Intergenic -208426 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 218-299 chr7 25556240 25556446 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 106797 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 375-415 chr8 115736223 115736464 + 2 NA Intergenic L2c|LINE|L2 -67368 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 568-15 chr10 64340191 64340602 + 2 NA Intergenic Intergenic -485132 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 438-101 chr18 66844433 66844701 + 2 NA Intergenic L1PA16|LINE|L1 -237017 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 402-160 chr2 117532801 117533024 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -281779 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 485-234 chr5 118513123 118513458 + 2 NA intron (NR_104610, intron 3 of 9) (ATAATAT)n|Simple_repeat|Simple_repeat 48827 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 361-39 chr10 43779446 43779647 + 2 NA promoter-TSS (NR_134484) promoter-TSS (NR_134484) -644 NR_134483 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 328-49 chr10 32076574 32076798 + 2 NA Intergenic MER21B|LTR|ERVL -20261 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 391-80 chr12 97766856 97767176 + 2 NA Intergenic Intergenic -10499 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 226-321 chr7 24413742 24413922 + 2 NA Intergenic HAL1|LINE|L1 129642 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 774-27 chr15 56985674 56986117 + 2 NA intron (NM_207038, intron 3 of 19) intron (NM_207038, intron 3 of 19) 66450 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 377-173 chr18 71149411 71149717 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 429392 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 334-164 chr14 94700580 94700767 + 2 NA Intergenic Intergenic 59948 NR_015340 388007 Hs.527795 NR_015340 ENSG00000187483 SERPINA13P SERPINA13|UNQ6121 serpin family A member 13, pseudogene pseudo 217-206 chr20 42184199 42184374 + 2 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -501197 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 617-103 chr5 16227541 16227916 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 47487 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 570-73 chr15 99462467 99462786 + 2 NA Intergenic L1MD1|LINE|L1 -102791 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 314-454 chr5 26394193 26394365 + 2 NA Intergenic L1MEg|LINE|L1 644307 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 336-539 chr8 78273641 78273962 + 2 NA Intergenic Intergenic -242539 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 277-229 chr20 40482766 40482957 + 2 NA Intergenic Intergenic 206375 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 376-323 chr5 75636388 75636700 + 2 NA intron (NM_001276713, intron 7 of 13) intron (NM_001276713, intron 7 of 13) 25068 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 683-13 chr10 131805054 131805540 + 2 NA Intergenic Intergenic -15098 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 346-299 chr3 10734492 10734688 + 2 NA Intergenic L1MB7|LINE|L1 29619 NR_152730 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 528-160 chr3 98270086 98270464 + 2 NA Intergenic L1M1|LINE|L1 6031 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 1165-5 chr16 82323757 82324518 + 2 NA Intergenic L1M2|LINE|L1 -153913 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 442-264 chr6 141595894 141596165 + 2 NA Intergenic L1ME1|LINE|L1 492770 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 296-89 chr12 10638937 10639088 + 2 NA intron (NM_018423, intron 1 of 10) intron (NM_018423, intron 1 of 10) -25403 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 324-51 chr10 32999755 32999987 + 2 NA Intergenic L1PA16|LINE|L1 -41641 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 425-33 chr10 43113613 43113983 + 2 NA intron (NM_020630, intron 10 of 18) intron (NM_020630, intron 10 of 18) 9066 NM_001355216 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 266-121 chr14 85991203 85991385 + 2 NA intron (NR_110155, intron 1 of 3) MLT1C|LTR|ERVL-MaLR 56616 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 297-469 chr8 82539023 82539302 + 2 NA Intergenic Intergenic -372942 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 307-26 chr1 168643473 168643753 + 2 NA Intergenic Intergenic 67008 NM_002995 6375 Hs.546295 NM_002995 ENSG00000143184 XCL1 ATAC|LPTN|LTN|SCM-1|SCM-1a|SCM1|SCM1A|SCYC1 X-C motif chemokine ligand 1 protein-coding 422-157 chr2 173584424 173584793 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 229736 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 270-138 chr16 10703354 10703607 + 2 NA Intergenic SATR1|Satellite|Satellite -8550 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 374-118 chr15 96193387 96193576 + 2 NA intron (NR_125738, intron 2 of 4) L1MB7|LINE|L1 -65640 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 217-337 chr6 163088046 163088225 + 2 NA intron (NM_001080379, intron 3 of 4) intron (NM_001080379, intron 3 of 4) -33974 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 353-207 chr18 8571123 8571459 + 2 NA Intergenic LTR16A|LTR|ERVL -38154 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 340-330 chr21 15692114 15692314 + 2 NA Intergenic Intergenic -37720 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 602-122 chr7 5432859 5433299 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -4152 NM_001354886 100129484 Hs.147507 NM_001354886 LOC100129484 - uncharacterized LOC100129484 protein-coding 335-487 chr7 9271089 9271368 + 2 NA Intergenic L2|LINE|L2 -363042 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 509-136 chr21 33960600 33960971 + 2 NA intron (NR_134558, intron 2 of 2) L1MA5|LINE|L1 -15597 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 320-234 chr19 20338751 20338963 + 2 NA Intergenic Intergenic 60497 NR_036053 100302179 NR_036053 ENSG00000238517 MIR1270 MIR1270-1|MIR1270-2|MIRN1270|hsa-mir-1270|hsa-mir-1270-1|mir-1270 microRNA 1270 ncRNA 409-117 chr18 21354656 21355045 + 2 NA intron (NM_001142966, intron 1 of 32) L2c|LINE|L2 112608 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 193-214 chr9 30427339 30427465 + 2 NA Intergenic L1MA3|LINE|L1 -18948 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 291-219 chr2 78836130 78836298 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -189488 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 360-71 chr11 112769563 112769811 + 2 NA Intergenic Intergenic -191733 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 228-280 chr5 155310215 155310425 + 2 NA Intergenic Plat_L3|LINE|CR1 296565 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 225-132 chr18 3817499 3817668 + 2 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 27775 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 240-242 chr2 161463173 161463321 + 2 NA Intergenic L1MEf|LINE|L1 44655 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 529-226 chr8 134879859 134880333 + 2 NA intron (NR_125427, intron 1 of 2) MamRep605|LTR?|LTR? 30161 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 254-411 chr8 88851924 88852131 + 2 NA Intergenic L1ME2|LINE|L1 -524544 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 377-195 chr2 38738998 38739326 + 2 NA Intergenic AluSz|SINE|Alu 12199 NM_001031684 6432 Hs.309090 NM_006276 ENSG00000115875 SRSF7 9G8|AAG3|SFRS7 serine and arginine rich splicing factor 7 protein-coding 349-229 chr19 40493752 40494065 + 2 NA intron (NM_020971, intron 5 of 35) MER115|DNA|hAT-Tip100 26907 NM_020971 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 212-6 chr1 95358747 95358885 + 2 NA Intergenic AluSz|SINE|Alu -6709 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 496-172 chr3 34155236 34155580 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 356778 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 478-98 chr15 62603813 62604164 + 2 NA Intergenic MER58B|DNA|hAT-Charlie 41193 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 473-243 chr6 104566543 104566914 + 2 NA Intergenic Intergenic 292818 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 271-281 chr3 145686589 145686747 + 2 NA Intergenic Intergenic 382517 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 255-80 chr12 65660899 65661101 + 2 NA Intergenic Intergenic -18628 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 597-45 chr14 47907716 47908115 + 2 NA Intergenic L1MB1|LINE|L1 -112901 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 274-419 chrX 45989405 45989639 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -138032 NR_125365 401585 Hs.633348 NR_125365 ENSG00000231566 LINC02595 - long intergenic non-protein coding RNA 2595 ncRNA 273-298 chr3 95748379 95748612 + 2 NA Intergenic L1MD2|LINE|L1 -65302 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 336-464 chr5 113636516 113636773 + 2 NA Intergenic MLT2B3|LTR|ERVL 122950 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 363-309 chr3 193009981 193010223 + 2 NA Intergenic Intergenic -92246 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 287-197 chr2 67971241 67971443 + 2 NA Intergenic L1ME3G|LINE|L1 91662 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 541-35 chr11 99538375 99538790 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -17563 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 440-266 chr9 76663819 76664243 + 2 NA intron (NM_001308048, intron 9 of 17) MLT1F1|LTR|ERVL-MaLR 28384 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 326-466 chr6 130518657 130518860 + 2 NA Intergenic Intergenic 81641 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 519-57 chr13 101225296 101225691 + 2 NA intron (NM_001350749, intron 13 of 43) HERVFH19-int|LTR|ERV1 191015 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 262-207 chr2 84991294 84991479 + 2 NA intron (NM_020122, intron 1 of 6) intron (NM_020122, intron 1 of 6) 20225 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 227-223 chr3 19840812 19841023 + 2 NA Intergenic Intergenic 93300 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 163-31 chr12 39479949 39480060 + 2 NA Intergenic L1MEd|LINE|L1 -36884 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 374-141 chr17 26663278 26663467 + 2 NA Intergenic ALR/Alpha|Satellite|centr 425869 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 467-14 chr1 212149280 212149684 + 2 NA Intergenic AluY|SINE|Alu 71869 NR_036068 100422947 NR_036068 ENSG00000264358 MIR3122 mir-3122 microRNA 3122 ncRNA 216-65 chr11 100285533 100285682 + 2 NA intron (NM_001243270, intron 17 of 23) intron (NM_001243270, intron 17 of 23) -401681 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 268-417 chr8 126547621 126547859 + 2 NA Intergenic MIR|SINE|MIR 10738 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 276-425 chr7 30209980 30210217 + 2 NA Intergenic Intergenic -74499 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 477-230 chr4 135984344 135984788 + 2 NA Intergenic Intergenic -70886 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 291-76 chr11 85242258 85242415 + 2 NA intron (NM_001142699, intron 4 of 27) L1MEh|LINE|L1 -318915 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 331-536 chr8 107172471 107172668 + 2 NA Intergenic Intergenic 163946 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 319-109 chr12 58291170 58291390 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 203388 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 393-56 chr11 94030060 94030360 + 2 NA intron (NM_001098672, intron 1 of 19) MIR3|SINE|MIR 8856 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 217-92 chr12 99678104 99678253 + 2 NA intron (NM_152788, intron 8 of 25) intron (NM_152788, intron 8 of 25) 30425 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 112-6 chr11 41055626 41055704 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 403971 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 462-44 chr11 39347202 39347541 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR 698513 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 258-159 chr17 49826322 49826523 + 2 NA intron (NM_007067, intron 13 of 14) intron (NM_007067, intron 13 of 14) -19488 NM_001242791 729220 Hs.434138 NM_001242791 FLJ45513 - uncharacterized LOC729220 protein-coding 302-336 chr4 161052309 161052464 + 2 NA Intergenic Intergenic -970347 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 570-161 chr5 91561829 91562247 + 2 NA Intergenic Intergenic -178721 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 360-256 chr2 223788927 223789180 + 2 NA intron (NR_110905, intron 1 of 5) HAL1|LINE|L1 48529 NR_110906 130340 Hs.632555 NM_178814 ENSG00000152056 AP1S3 PSORS15 adaptor related protein complex 1 subunit sigma 3 protein-coding 229-129 chr15 95911369 95911581 + 2 NA Intergenic Intergenic 216366 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 325-154 chr13 104613592 104613800 + 2 NA Intergenic MIRb|SINE|MIR -852171 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 538-253 chr9 32771970 32772435 + 2 NA Intergenic L1M4c|LINE|L1 -11338 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 341-346 chr3 137477147 137477322 + 2 NA Intergenic Intergenic -287081 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 547-110 chr2 143080865 143081352 + 2 NA Intergenic Intergenic -48311 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 497-4 chr1 79624629 79624986 + 2 NA Intergenic Intergenic -618077 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 503-98 chr14 63186780 63187246 + 2 NA Intergenic Intergenic -17430 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 266-174 chr2 49972219 49972419 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) 1884 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 686-28 chr17 22255375 22255953 + 2 NA Intergenic ALR/Alpha|Satellite|centr -43100 NR_028336 284123 Hs.348578 NM_203392 ENSG00000178130 FAM27E5 FAM27L family with sequence similarity E5 ncRNA 384-5 chr1 62583111 62583397 + 2 NA TTS (NM_001272002) TTS (NM_001272002) -14266 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 441-78 chr14 66475629 66475911 + 2 NA Intergenic Intergenic -10601 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 323-372 chr4 65394929 65395182 + 2 NA intron (NM_001281767, intron 8 of 16) intron (NM_001281767, intron 8 of 16) 274433 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 336-435 chr4 149538463 149538738 + 2 NA intron (NM_001363507, intron 12 of 13) L1MB8|LINE|L1 277243 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 356-169 chr15 86347500 86347809 + 2 NA intron (NM_152336, intron 17 of 24) intron (NM_152336, intron 17 of 24) -30686 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 315-376 chr5 41159694 41159869 + 2 NA intron (NM_000065, intron 11 of 17) intron (NM_000065, intron 11 of 17) 53751 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 217-289 chr5 25746300 25746471 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 555432 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 536-79 chr15 23750806 23751197 + 2 NA Intergenic MER4B-int|LTR|ERV1 -63696 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 216-286 chr5 109609014 109609179 + 2 NA Intergenic L1MEc|LINE|L1 -80270 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 416-318 chr7 86263944 86264168 + 2 NA Intergenic Intergenic -379853 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 233-272 chr4 116002194 116002390 + 2 NA Intergenic Intergenic -297433 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 377-430 chr9 95429571 95429858 + 2 NA Intergenic Intergenic -33895 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 617-16 chr11 20183391 20183964 + 2 NA Intergenic MIRb|SINE|MIR -23202 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 217-255 chr4 59236571 59236743 + 2 NA Intergenic L1PA13|LINE|L1 223084 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 139-53 chr3 28263070 28263189 + 2 NA intron (NM_001331189, intron 2 of 4) intron (NM_001331189, intron 2 of 4) 21510 NM_001331186 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 171-35 chr14 92034589 92034722 + 2 NA intron (NM_004239, intron 1 of 20) AluJr|SINE|Alu 5404 NM_001321851 9321 Hs.632339 NM_004239 ENSG00000100815 TRIP11 ACG1A|CEV14|GMAP-210|GMAP210|ODCD|TRIP-11|TRIP230 thyroid hormone receptor interactor 11 protein-coding 328-348 chr3 59932924 59933169 + 2 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 147863 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 544-52 chr12 5302175 5302542 + 2 NA Intergenic L1MCc|LINE|L1 -59207 NR_120476 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 477-101 chr15 53189374 53189763 + 2 NA Intergenic Intergenic 73203 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 300-399 chr6 118668157 118668311 + 2 NA intron (NM_001178035, intron 1 of 13) intron (NM_001178035, intron 1 of 13) -16643 NM_001042475 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 280-424 chr8 126295080 126295268 + 2 NA Intergenic Intergenic -30321 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 298-434 chr7 53951596 53951824 + 2 NA Intergenic L1MC4|LINE|L1 -139779 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 277-281 chr4 34195910 34196114 + 2 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 73735 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 486-205 chr3 96067111 96067415 + 2 NA Intergenic Intergenic -292701 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 164-32 chr13 57471298 57471392 + 2 NA Intergenic Intergenic -160399 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 546-241 chr8 116347181 116347548 + 2 NA Intergenic Intergenic -22305 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 317-336 chr4 32771815 32772032 + 2 NA Intergenic L3|LINE|CR1 420885 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 311-190 chr17 515542 515805 + 2 NA 3' UTR (NM_001128159, exon 22 of 22) 3' UTR (NM_001128159, exon 22 of 22) -69733 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 273-430 chr7 97363977 97364161 + 2 NA Intergenic L1PA7|LINE|L1 247476 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 426-152 chr2 177051394 177051798 + 2 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? 160815 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 327-501 chr8 128548309 128548489 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 16280 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 211-182 chr3 44498440 44498600 + 2 NA TTS (NM_001287349) TTS (NM_001287349) 12097 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 440-212 chr6 18951493 18951885 + 2 NA Intergenic L1ME2z|LINE|L1 228791 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 279-41 chr10 58007522 58007708 + 2 NA Intergenic Intergenic 260279 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 418-71 chr14 56847566 56847943 + 2 NA intron (NR_146411, intron 2 of 2) L2c|LINE|L2 34596 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 609-130 chr7 93307876 93308363 + 2 NA intron (NM_001257998, intron 19 of 28) (GAT)n|Simple_repeat|Simple_repeat 75753 NM_017667 55610 Hs.202424 NM_017667 ENSG00000004766 VPS50 CCDC132|VPS54L VPS50 subunit of EARP/GARPII complex protein-coding 524-172 chr4 54406677 54407136 + 2 NA Intergenic Intergenic 74014 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 589-80 chr20 40933074 40933402 + 2 NA Intergenic AluJb|SINE|Alu -47475 NR_145525 100128988 Hs.636443 NR_145524 LOC100128988 - uncharacterized LOC100128988 ncRNA 212-64 chr11 38626541 38626696 + 2 NA intron (NR_120554, intron 3 of 4) intron (NR_120554, intron 3 of 4) 19738 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 217-26 chr1 231794452 231794660 + 2 NA intron (NM_001164547, intron 6 of 7) L2a|LINE|L2 23961 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 331-136 chr13 60003364 60003538 + 2 NA intron (NM_001258369, intron 9 of 26) intron (NM_001258369, intron 9 of 26) -9267 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 394-148 chr19 15946235 15946467 + 2 NA Intergenic AluSp|SINE|Alu -2657 NM_001004465 126541 Hs.553579 NM_001004465 ENSG00000176231 OR10H4 OR19-28 olfactory receptor family 10 subfamily H member 4 protein-coding 203-165 chr4 60496165 60496344 + 2 NA Intergenic L1M4|LINE|L1 -426365 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 381-320 chr5 120563373 120563752 + 2 NA intron (NM_001308088, intron 1 of 3) L1MA2|LINE|L1 32098 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 544-35 chr10 106037277 106037688 + 2 NA Intergenic L1MCb|LINE|L1 -102683 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 711-8 chr10 71197514 71197938 + 2 NA Intergenic Intergenic -14844 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 287-328 chr5 121532337 121532529 + 2 NA Intergenic L1ME3Cz|LINE|L1 209883 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 365-210 chr2 157219659 157219911 + 2 NA Intergenic Intergenic -37920 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 521-83 chr14 78604397 78604739 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 200849 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 255-431 chr8 110726053 110726288 + 2 NA Intergenic Intergenic 301263 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 180-21 chr10 75075392 75075543 + 2 NA Intergenic L3|LINE|CR1 -16884 NM_001003892 338599 Hs.535090 NM_001003892 ENSG00000188716 DUPD1 DUSP27|FMDSP dual specificity phosphatase and pro isomerase domain containing 1 protein-coding 411-2 chr1 43856776 43857017 + 2 NA intron (NM_001270466, intron 4 of 4) intron (NM_001270466, intron 4 of 4) 18274 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 348-239 chr2 146215765 146215985 + 2 NA Intergenic L1MEf|LINE|L1 -371182 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 373-178 chr19 53696038 53696298 + 2 NA TTS (NR_030191) TTS (NR_030191) 955 NR_030191 574469 NR_030191 ENSG00000207825 MIR519B MIRN519B|mir-519b microRNA 519b ncRNA 217-6 chr1 48418150 48418316 + 2 NA intron (NM_019073, intron 3 of 12) intron (NM_019073, intron 3 of 12) 53971 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 272-296 chr4 36854386 36854616 + 2 NA Intergenic Intergenic -147278 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 277-339 chr5 163886055 163886270 + 2 NA Intergenic Intergenic 380543 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 403-315 chr8 131846580 131846815 + 2 NA Intergenic Intergenic -57396 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 688-90 chr5 160562652 160563209 + 2 NA TTS (NM_001366655) TTS (NM_001366655) 77578 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 244-368 chr8 86283662 86283806 + 2 NA Intergenic HAL1b|LINE|L1 -53353 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 576-161 chr7 94686517 94687083 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie 30430 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 359-277 chr20 12696961 12697168 + 2 NA Intergenic Intergenic 239899 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 244-275 chr4 103480962 103481160 + 2 NA Intergenic Intergenic 56019 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 287-75 chr10 113023135 113023298 + 2 NA intron (NM_001367943, intron 4 of 14) intron (NM_001367943, intron 4 of 14) -22139 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 377-43 chr10 51751105 51751393 + 2 NA intron (NM_001098512, intron 3 of 17) AluSz|SINE|Alu -51654 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 353-422 chr5 118741937 118742221 + 2 NA Intergenic L1PA16|LINE|L1 145891 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 359-463 chr8 47306324 47306563 + 2 NA intron (NR_104581, intron 5 of 16) L1MB3|LINE|L1 45505 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 196-90 chr16 26106641 26106781 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 81474 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 387-35 chr10 49433841 49434117 + 2 NA Intergenic L1MEd|LINE|L1 -37890 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 396-202 chr21 28561136 28561411 + 2 NA Intergenic L1PA16|LINE|L1 21955 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 934-36 chrX 58190536 58191191 + 2 NA Intergenic HSAT4|Satellite|centr -280230 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 589-40 chr17 35472214 35472725 + 2 NA Intergenic L1PA10|LINE|L1 15270 NM_001195790 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 372-342 chr3 173845532 173845879 + 2 NA intron (NM_001365928, intron 4 of 6) MIR3|SINE|MIR 75091 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 237-67 chr12 13643938 13644092 + 2 NA intron (NM_000834, intron 4 of 12) Tigger1|DNA|TcMar-Tigger -267270 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 156-82 chr5 100251722 100251856 + 2 NA Intergenic L2c|LINE|L2 136465 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 430-306 chr8 55424521 55424896 + 2 NA intron (NM_052898, intron 2 of 2) L2a|LINE|L2 30613 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 252-157 chr17 61234054 61234227 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 133564 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 434-322 chr9 138034791 138035131 + 2 NA intron (NM_001243812, intron 20 of 45) Tigger7|DNA|TcMar-Tigger 10110 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 254-180 chr2 30779397 30779559 + 2 NA intron (NM_144575, intron 2 of 22) intron (NM_144575, intron 2 of 22) 27968 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 360-174 chr17 78950606 78950875 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -25353 NM_003255 7077 Hs.633514 NM_003255 ENSG00000035862 TIMP2 CSC-21K|DDC8 TIMP metallopeptidase inhibitor 2 protein-coding 376-320 chr5 50903174 50903425 + 2 NA Intergenic MIR|SINE|MIR 66888 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 335-91 chr11 41789391 41789600 + 2 NA intron (NR_120584, intron 2 of 5) LTR49-int|LTR|ERV1 74927 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 159-102 chr9 32644833 32644920 + 2 NA Intergenic Intergenic -9207 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 616-92 chr2 190136001 190136528 + 2 NA Intergenic LTR22A|LTR|ERVK -1513 NM_001042521 84281 Hs.389311 NM_032321 ENSG00000187699 C2orf88 smAKAP chromosome 2 open reading frame 88 protein-coding 252-168 chr18 55763550 55763724 + 2 NA Intergenic Intergenic 16784 NR_145453 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 362-178 chr16 13394993 13395226 + 2 NA Intergenic Intergenic 493511 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 764-65 chr7 49942887 49943444 + 2 NA intron (NM_001159878, intron 7 of 7) intron (NM_001159878, intron 7 of 7) 150081 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 321-326 chr20 11375329 11375569 + 2 NA Intergenic Intergenic -102066 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 279-437 chr9 73346609 73346827 + 2 NA Intergenic Intergenic 194853 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 262-375 chr6 67602840 67603063 + 2 NA Intergenic Intergenic -452400 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 252-342 chr5 105713102 105713310 + 2 NA Intergenic Intergenic 613732 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 338-551 chr8 108509293 108509593 + 2 NA Intergenic L2|LINE|L2 65819 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 571-90 chr20 8479895 8480284 + 2 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 231385 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 762 chr1 98630568 98631117 + 2 NA Intergenic Intergenic -30879 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 211-124 chr19 23195560 23195741 + 2 NA Intergenic HAL1|LINE|L1 54744 NM_001355404 440519 Hs.675814 NM_001355404 ENSG00000196081 ZNF724 ZNF724P zinc finger protein 724 protein-coding 545-242 chr8 118647016 118647455 + 2 NA intron (NR_038210, intron 2 of 4) MLT1I|LTR|ERVL-MaLR -25272 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 356-480 chr8 99093915 99094125 + 2 NA intron (NR_047582, intron 4 of 8) intron (NR_047582, intron 4 of 8) 80754 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 245-208 chr2 184480523 184480739 + 2 NA Intergenic Intergenic 101656 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 365-264 chr3 112548356 112548685 + 2 NA intron (NM_001278712, intron 5 of 10) intron (NM_001278712, intron 5 of 10) -12800 NM_001348906 55032 Hs.237480 NM_017945 ENSG00000138459 SLC35A5 - solute carrier family 35 member A5 protein-coding 319-13 chr1 91302814 91303070 + 2 NA intron (NM_001017975, intron 30 of 38) L1PA4|LINE|L1 101895 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 352-556 chr9 18640977 18641160 + 2 NA intron (NM_052866, intron 7 of 12) L2c|LINE|L2 67762 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 663-60 chr2 147696612 147697160 + 2 NA Intergenic Intergenic -147631 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 390-351 chr7 48867909 48868159 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -56513 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 264-156 chr16 65706288 65706495 + 2 NA Intergenic Intergenic -130091 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 549-115 chr2 126740463 126740962 + 2 NA Intergenic L2|LINE|L2 84554 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 127-11 chr10 17061591 17061699 + 2 NA intron (NM_001081, intron 22 of 66) intron (NM_001081, intron 22 of 66) 68172 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 612-134 chr7 94826692 94827135 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -80681 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 202-26 chr10 32726313 32726436 + 2 NA intron (NM_001321115, intron 26 of 43) L1MC4a|LINE|L1 175098 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 215-148 chr2 79017445 79017649 + 2 NA Intergenic Intergenic -8155 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 282-485 chr9 74408430 74408624 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 36996 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 210-217 chr5 12827889 12828077 + 2 NA Intergenic Intergenic 160124 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 287-71 chr10 98975987 98976216 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -51533 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 519-33 chr11 58488964 58489412 + 2 NA Intergenic L1ME5|LINE|L1 18917 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 338-563 chr8 126954700 126954949 + 2 NA Intergenic Intergenic -58330 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 401-12 chr1 177847025 177847318 + 2 NA Intergenic L2c|LINE|L2 122751 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 333-135 chr13 89315865 89316152 + 2 NA Intergenic Intergenic -79118 NR_131229 105616982 Hs.564527 NR_131229 ENSG00000232225 LINC01047 - long intergenic non-protein coding RNA 1047 ncRNA 157-136 chr8 135163693 135163774 + 2 NA Intergenic Intergenic -70398 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 379-230 chr4 36528471 36528741 + 2 NA intron (NR_149124, intron 3 of 4) L1M2|LINE|L1 -102178 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 246-273 chr3 121331400 121331625 + 2 NA intron (NM_001348343, intron 21 of 27) L1PREC2|LINE|L1 214476 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 348-103 chr12 2276076 2276290 + 2 NA intron (NR_046769, intron 1 of 2) MIR3|SINE|MIR 6407 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 365-263 chr3 108447579 108447858 + 2 NA intron (NM_014981, intron 22 of 41) L1MA9|LINE|L1 81604 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 229-33 chr10 62417423 62417643 + 2 NA intron (NM_199451, intron 3 of 7) intron (NM_199451, intron 3 of 7) -42406 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 308-490 chr8 68651650 68651935 + 2 NA intron (NR_146187, intron 8 of 13) L1PA17|LINE|L1 -320301 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 256-68 chr11 56992405 56992556 + 2 NA Intergenic L1PA16|LINE|L1 3566 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 375-137 chr14 101067506 101067693 + 2 NA TTS (NR_030392) TTS (NR_030392) 875 NR_030392 724026 NR_030392 ENSG00000207959 MIR656 MIRN656|hsa-mir-656|mir-656 microRNA 656 ncRNA 282-452 chr8 88373010 88373213 + 2 NA Intergenic L1MA7|LINE|L1 -45628 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 224-314 chr8 56482261 56482475 + 2 NA intron (NR_125813, intron 1 of 3) intron (NR_125813, intron 1 of 3) -35727 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 363-176 chr17 35224792 35225129 + 2 NA Intergenic L1MC5a|LINE|L1 -18112 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 324-578 chrX 65238106 65238369 + 2 NA Intergenic L1PA11|LINE|L1 -203496 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 315-403 chr5 166104459 166104679 + 2 NA Intergenic Intergenic 821801 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 250-370 chr6 23055017 23055251 + 2 NA Intergenic Intergenic -337210 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 294-47 chr10 90806669 90806937 + 2 NA intron (NM_019860, intron 1 of 2) MER4B-int|LTR|ERV1 51236 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 242-369 chr7 43290490 43290671 + 2 NA intron (NM_001287059, intron 2 of 27) MER49|LTR|ERV1 139685 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 161-3 chr1 81191643 81191775 + 2 NA Intergenic Intergenic -114483 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 224-214 chr4 13045493 13045683 + 2 NA Intergenic Intergenic 438752 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 203-160 chr3 190909353 190909506 + 2 NA Intergenic Intergenic 31499 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 313-368 chr3 192391826 192392099 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 17087 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 332-260 chr2 115857462 115857652 + 2 NA Intergenic L1MA4|LINE|L1 513742 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 127-2 chr1 34115337 34115439 + 2 NA intron (NM_052896, intron 1 of 69) L1MB2|LINE|L1 49886 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 384-378 chr8 115389353 115389617 + 2 NA Intergenic Intergenic 278528 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 372-514 chr9 74020582 74020821 + 2 NA Intergenic L1MA3|LINE|L1 -350830 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 261-228 chr22 26480761 26480985 + 2 NA intron (NR_146315, intron 2 of 14) AluJb|SINE|Alu -1192 NM_152841 89781 Hs.474436 NM_022081 ENSG00000100099 HPS4 BLOC3S2|LE HPS4 biogenesis of lysosomal organelles complex 3 subunit 2 protein-coding 127-60 chr4 46358815 46358899 + 2 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 30522 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 396-234 chr3 150642135 150642477 + 2 NA Intergenic L1P4|LINE|L1 38985 NM_016275 51714 Hs.369052 NM_016275 ENSG00000198843 SELENOT SELT selenoprotein T protein-coding 329-248 chr19 36713863 36714057 + 2 NA intron (NM_152603, intron 4 of 4) intron (NM_152603, intron 4 of 4) 10279 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 333-258 chr2 116402864 116403106 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 1059170 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 311-216 chr18 57492686 57492857 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 57397 NM_004852 9480 Hs.194725 NM_004852 ENSG00000119547 ONECUT2 OC-2|OC2 one cut homeobox 2 protein-coding 420-240 chr5 117137709 117138075 + 2 NA Intergenic Intergenic -277620 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 367-444 chr8 48486648 48486837 + 2 NA Intergenic L1PA6|LINE|L1 -64825 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 391-323 chr7 6666345 6666635 + 2 NA Intergenic AluSx|SINE|Alu 29172 NM_001278559 100131017 Hs.112668 NM_001278559 ENSG00000205903 ZNF316 MZF-3 zinc finger protein 316 protein-coding 617-97 chr4 96113353 96113896 + 2 NA Intergenic Intergenic -197079 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 144-106 chr9 11193508 11193599 + 2 NA Intergenic Intergenic 580347 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 176-91 chr3 153589843 153590012 + 2 NA intron (NR_146713, intron 4 of 6) intron (NR_146713, intron 4 of 6) 105432 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 469-278 chr8 71402967 71403346 + 2 NA intron (NM_001370336, intron 2 of 17) L1M5|LINE|L1 -41087 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 439-213 chr4 118581742 118582141 + 2 NA Intergenic Intergenic -9803 NR_109983 729218 Hs.448518 NR_103825 LOC729218 - uncharacterized LOC729218 pseudo 299-208 chr2 76623910 76624171 + 2 NA Intergenic L1PA16|LINE|L1 -361925 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 327-431 chr6 36461776 36461958 + 2 NA intron (NR_104481, intron 1 of 3) intron (NR_104481, intron 1 of 3) 18867 NM_001286579 222658 Hs.188757 NM_173562 ENSG00000112078 KCTD20 C6orf69|dJ108K11.3 potassium channel tetramerization domain containing 20 protein-coding 213-157 chr20 9507524 9507656 + 2 NA intron (NR_109957, intron 2 of 4) intron (NR_109957, intron 2 of 4) -6768 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 331-269 chr2 77784567 77784742 + 2 NA intron (NR_110288, intron 3 of 3) L1M5|LINE|L1 -131280 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 266-162 chr19 28276340 28276531 + 2 NA Intergenic L1MB4|LINE|L1 -330253 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 248-75 chr12 8973896 8974047 + 2 NA intron (NR_137427, intron 1 of 2) L1M4c|LINE|L1 -15575 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 397-120 chr18 2880504 2880742 + 2 NA intron (NM_032048, intron 2 of 7) intron (NM_032048, intron 2 of 7) 33617 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 340-535 chr8 83654966 83655206 + 2 NA Intergenic MIRc|SINE|MIR 251328 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 518-155 chr2 240080740 240081063 + 2 NA Intergenic AluY|SINE|Alu -34829 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 372-254 chr2 125035084 125035408 + 2 NA Intergenic L1PB2|LINE|L1 1009959 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 165-33 chr14 71447431 71447563 + 2 NA intron (NM_001284247, intron 1 of 23) intron (NM_001284247, intron 1 of 23) 8558 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 215-96 chr15 59221312 59221486 + 2 NA intron (NM_004998, intron 9 of 27) L1ME4b|LINE|L1 14556 NM_033195 92483 Hs.307052 NM_033195 ENSG00000171989 LDHAL6B LDH6B|LDHAL6|LDHL lactate dehydrogenase A like 6B protein-coding 172-85 chr3 180474109 180474214 + 2 NA Intergenic L1ME3|LINE|L1 59988 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 804 chr1 4720665 4721389 + 2 NA intron (NM_018836, intron 2 of 5) intron (NM_018836, intron 2 of 5) 66418 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 607-115 chr5 21140746 21141184 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -318515 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 136-58 chr22 42838700 42838782 + 2 NA intron (NM_014570, intron 3 of 15) intron (NM_014570, intron 3 of 15) 18532 NM_014570 26286 Hs.685225 NM_014570 ENSG00000242247 ARFGAP3 ARFGAP1 ADP ribosylation factor GTPase activating protein 3 protein-coding 311-58 chr10 77369182 77369410 + 2 NA intron (NR_126365, intron 3 of 5) MER5B|DNA|hAT-Charlie 18424 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 312-563 chrX 95422262 95422492 + 2 NA Intergenic Intergenic -359151 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 476-36 chr10 106552445 106552730 + 2 NA Intergenic Intergenic 412422 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 291-165 chr16 80200461 80200683 + 2 NA intron (NR_120307, intron 2 of 5) L2a|LINE|L2 -340162 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 331-94 chr11 77295404 77295664 + 2 NA intron (NM_182833, intron 1 of 16) AluJb|SINE|Alu 6132 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 337-406 chr4 99465210 99465518 + 2 NA Intergenic L1M1|LINE|L1 -29854 NM_000673 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 312-554 chrUn_KI270442v1 71306 71577 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 174-80 chr21 10698962 10699083 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 177508 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 341-437 chr5 88533827 88534068 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -94857 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 159-57 chr3 101322555 101322681 + 2 NA Intergenic Intergenic -2043 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 297-88 chr11 113667919 113668116 + 2 NA Intergenic L1MB7|LINE|L1 38291 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 326-386 chr4 142325578 142325755 + 2 NA intron (NM_001331040, intron 7 of 25) intron (NM_001331040, intron 7 of 25) 520869 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 272-131 chr15 56601315 56601478 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie 132690 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 521-147 chr21 24814546 24815046 + 2 NA Intergenic LTR53-int|LTR|ERVL -25754 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 345-203 chr17 52777943 52778231 + 2 NA Intergenic Intergenic -84034 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 474-185 chr3 112707191 112707525 + 2 NA Intergenic L1PREC2|LINE|L1 -29731 NR_162092 113218483 NR_162092 MIR9900 - microRNA 9900 ncRNA 413-202 chr3 179157803 179158162 + 2 NA intron (NM_006218, intron 1 of 20) MIR|SINE|MIR 9625 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 250-213 chr2 103081093 103081301 + 2 NA Intergenic Intergenic -96768 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 314-364 chr3 18988845 18989097 + 2 NA Intergenic Intergenic -159539 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 341-378 chr4 43165636 43165834 + 2 NA Intergenic Intergenic 272469 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 315-325 chr3 185776730 185776925 + 2 NA intron (NR_138486, intron 2 of 15) intron (NR_138486, intron 2 of 15) -8923 NR_049838 100847078 NR_049838 ENSG00000265470 MIR548AQ - microRNA 548aq ncRNA 389-133 chr17 34537836 34538172 + 2 NA Intergenic Intergenic 41365 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 348-95 chr11 100373222 100373520 + 2 NA Intergenic Intergenic -313917 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 380-370 chr7 81271008 81271333 + 2 NA Intergenic Intergenic 290649 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 659-100 chr7 30313092 30313679 + 2 NA intron (NM_147128, intron 1 of 4) intron (NM_147128, intron 1 of 4) -23495 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 186-31 chr12 14758112 14758253 + 2 NA Intergenic L1MEj|LINE|L1 12949 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 262-22 chr1 177055497 177055675 + 2 NA intron (NM_207108, intron 2 of 21) intron (NM_207108, intron 2 of 21) -26141 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 459-307 chr8 126776351 126776679 + 2 NA Intergenic L1MEg|LINE|L1 -218037 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 335-468 chr6 74829115 74829379 + 2 NA Intergenic Intergenic 299535 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 357-253 chr22 22859007 22859315 + 2 NA Intergenic L1MEc|LINE|L1 -27106 NR_049835 100847006 NR_049835 ENSG00000264824 MIR5571 - microRNA 5571 ncRNA 250-245 chr20 55048829 55048983 + 2 NA Intergenic Intergenic -374137 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 237-337 chr6 146139721 146139893 + 2 NA intron (NM_001278065, intron 2 of 9) L1MA3|LINE|L1 110609 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 352-305 chr22 49332508 49332734 + 2 NA Intergenic Intergenic 210845 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 846-19 chr17 57392419 57393080 + 2 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 130848 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 205-32 chr10 52811376 52811572 + 2 NA Intergenic L1MCb|LINE|L1 -39774 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 377-418 chr8 134160290 134160600 + 2 NA Intergenic Intergenic 273949 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 363-196 chr19 37562549 37562732 + 2 NA intron (NM_152606, intron 1 of 4) intron (NM_152606, intron 1 of 4) 11266 NM_152606 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 222-75 chr11 113220156 113220339 + 2 NA intron (NM_000615, intron 8 of 17) intron (NM_000615, intron 8 of 17) 53654 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 434-118 chr18 33784016 33784378 + 2 NA Intergenic Intergenic 205978 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 409-120 chr18 55470506 55470842 + 2 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) -8547 NR_039754 100616290 NR_039754 ENSG00000264571 MIR4529 - microRNA 4529 ncRNA 518-83 chr14 62440559 62440900 + 2 NA Intergenic L1M2a|LINE|L1 -300756 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 245-211 chr2 222759459 222759619 + 2 NA Intergenic AluJr|SINE|Alu 87881 NM_058165 116255 Hs.344090 NM_058165 ENSG00000124003 MOGAT1 DGAT2L|DGAT2L1|MGAT1 monoacylglycerol O-acyltransferase 1 protein-coding 575-170 chr6 63022970 63023488 + 2 NA Intergenic Intergenic 296748 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 207-218 chr4 67822020 67822200 + 2 NA 3' UTR (NM_004262, exon 10 of 10) 3' UTR (NM_004262, exon 10 of 10) 61892 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 342-126 chr13 22200734 22200993 + 2 NA Intergenic Intergenic -9422 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 255-366 chr6 149108986 149109154 + 2 NA Intergenic L2a|LINE|L2 -76409 NR_134599 105378047 Hs.659484 NR_134599 LOC105378047 - uncharacterized LOC105378047 ncRNA 253-45 chr10 17415473 17415641 + 2 NA intron (NM_001004470, intron 2 of 7) LTR48|LTR|ERV1 28621 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 200-188 chr4 63931703 63931864 + 2 NA Intergenic L1MA5|LINE|L1 477667 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 352-213 chr2 4630048 4630267 + 2 NA non-coding (NR_034134, exon 5 of 5) non-coding (NR_034134, exon 5 of 5) 26065 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 309-428 chr5 22312211 22312381 + 2 NA intron (NM_001364104, intron 2 of 13) L1MD1|LINE|L1 -98446 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 259 chr1 4243149 4243378 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -168788 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 295-18 chr1 157673958 157674197 + 2 NA Intergenic L1M5|LINE|L1 26692 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 355-189 chr16 80495352 80495591 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -45263 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 503-235 chr5 109101432 109101858 + 2 NA intron (NR_146155, intron 17 of 19) intron (NR_146155, intron 17 of 19) 177039 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 373-376 chr7 37515252 37515553 + 2 NA Intergenic Intergenic -66076 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 336-365 chr3 61006637 61006870 + 2 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) 244699 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 300-454 chr8 57469447 57469675 + 2 NA Intergenic L1MC1|LINE|L1 125774 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 356-444 chr7 27774846 27775178 + 2 NA intron (NM_001362794, intron 5 of 16) intron (NM_001362794, intron 5 of 16) 34917 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 264-238 chr20 18130804 18130964 + 2 NA Intergenic L1M7|LINE|L1 -6979 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 cytochrome c oxidase chaperone protein-coding 266-439 chr8 127566204 127566405 + 2 NA Intergenic Intergenic -84165 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 722-20 chr11 99887933 99888586 + 2 NA intron (NM_001243270, intron 5 of 23) intron (NM_001243270, intron 5 of 23) 332114 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 262-7 chr1 59154443 59154654 + 2 NA Intergenic LTR67B|LTR|ERVL -7741 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 466-299 chrX 24451026 24451322 + 2 NA Intergenic LTR16C|LTR|ERVL -14053 NM_005391 5165 Hs.296031 NM_005391 ENSG00000067992 PDK3 CMTX6|GS1-358P8.4 pyruvate dehydrogenase kinase 3 protein-coding 326-108 chr11 94223768 94224063 + 2 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -81722 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 358-389 chr5 155076511 155076734 + 2 NA Intergenic Intergenic 62867 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 218-140 chr19 36737162 36737294 + 2 NA Intergenic L1MA2|LINE|L1 33547 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 292-253 chr20 42631736 42631925 + 2 NA intron (NM_133170, intron 7 of 31) MER77|LTR|ERVL -53653 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 591-26 chr11 93369245 93369636 + 2 NA intron (NM_181645, intron 5 of 13) intron (NM_181645, intron 5 of 13) 38723 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 197-52 chr13 91874335 91874486 + 2 NA intron (NM_004466, intron 5 of 7) L1ME4a|LINE|L1 475789 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 204-70 chr12 133113578 133113705 + 2 NA Intergenic Intergenic 16832 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 327-250 chr2 42289294 42289556 + 2 NA intron (NM_001145076, intron 10 of 21) L2|LINE|L2 70613 NR_134948 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 323-72 chr10 124300357 124300565 + 2 NA Intergenic Intergenic 118462 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 672-100 chr7 33211154 33211643 + 2 NA intron (NM_198428, intron 5 of 22) L1MA3|LINE|L1 81834 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 610-178 chr9 35134229 35134633 + 2 NA Intergenic AluSz|SINE|Alu -18569 NM_025182 80256 Hs.301696 NM_025182 ENSG00000005238 FAM214B KIAA1539 family with sequence similarity 214 member B protein-coding 310-40 chr10 29116628 29116860 + 2 NA Intergenic MIR|SINE|MIR -172326 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 243-43 chr10 58548363 58548532 + 2 NA intron (NM_001080512, intron 1 of 20) L1MC3|LINE|L1 35575 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 394-321 chr8 48185755 48186032 + 2 NA Intergenic AluJr4|SINE|Alu 177462 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 267-24 chr1 172400765 172401003 + 2 NA intron (NM_001350206, intron 20 of 20) L2c|LINE|L2 -19801 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 258-179 chr2 22391052 22391210 + 2 NA Intergenic Intergenic -145348 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 428-262 chr6 147454092 147454407 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -54441 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 271-174 chr18 6638903 6639161 + 2 NA Intergenic Intergenic -90684 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 263-140 chr16 63844051 63844218 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 1277929 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 318-491 chr6 137140421 137140593 + 2 NA Intergenic Intergenic 33137 NM_181310 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 346-152 chr15 35848379 35848680 + 2 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -78327 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 698-76 chr6 156520256 156520787 + 2 NA Intergenic HAL1M8|LINE|L1 141771 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 454-336 chr9 79699853 79700209 + 2 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) -124499 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 203-164 chr4 42710280 42710446 + 2 NA Intergenic Intergenic -53258 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 256-442 chr8 139329268 139329421 + 2 NA Intergenic L1ME3|LINE|L1 373779 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 309-435 chr5 42148125 42148308 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 27129 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 616-88 chr2 125610637 125611090 + 2 NA Intergenic L2a|LINE|L2 507122 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 212-79 chr12 30205521 30205684 + 2 NA Intergenic MER21-int|LTR|ERVL -420843 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 396-130 chr18 10295069 10295391 + 2 NA Intergenic Intergenic 119140 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 231-361 chr8 129297982 129298130 + 2 NA Intergenic L1MB8|LINE|L1 -56816 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 370-293 chr22 26908579 26908916 + 2 NA intron (NR_110540, intron 2 of 2) intron (NR_110540, intron 2 of 2) 5455 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 239-350 chr6 52998102 52998291 + 2 NA Intergenic L1MA8|LINE|L1 2576 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 536-220 chr7 93101261 93101591 + 2 NA exon (NM_001193307, exon 2 of 2) exon (NM_001193307, exon 2 of 2) 16553 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 346-189 chr17 33845459 33845795 + 2 NA intron (NM_001094, intron 1 of 9) MIRc|SINE|MIR 311179 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 160-2 chr1 49473721 49473844 + 2 NA intron (NR_136623, intron 2 of 12) L1PA17|LINE|L1 -1697 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 428-124 chr2 56701322 56701636 + 2 NA Intergenic L2b|LINE|L2 -515709 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 257-420 chr8 122364773 122364931 + 2 NA Intergenic LTR72B|LTR|ERV1 203792 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 320-195 chr16 72388325 72388602 + 2 NA intron (NR_126330, intron 7 of 13) L1MEd|LINE|L1 -216013 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 304-69 chr11 5506342 5506612 + 2 NA promoter-TSS (NR_038321) promoter-TSS (NR_038321) -825 NR_038321 282763 Hs.690458 NM_001005567 ENSG00000167355 OR51B5 HOR5'Beta5|OR11-37 olfactory receptor family 51 subfamily B member 5 protein-coding 238-296 chr5 54014355 54014523 + 2 NA intron (NM_019087, intron 4 of 4) LTR29|LTR|ERV1 -62840 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 444-214 chr6 1800033 1800298 + 2 NA intron (NM_001253846, intron 7 of 10) intron (NM_001253846, intron 7 of 10) 190250 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 190-7 chr1 163061068 163061229 + 2 NA Intergenic Intergenic -7458 NM_001102445 5999 Hs.386726 NM_005613 ENSG00000117152 RGS4 RGP4|SCZD9 regulator of G protein signaling 4 protein-coding 436-44 chr11 30569258 30569542 + 2 NA intron (NM_001584, intron 1 of 5) intron (NM_001584, intron 1 of 5) 11093 NM_001584 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 556-203 chr7 33272720 33273126 + 2 NA intron (NM_198428, intron 7 of 22) intron (NM_198428, intron 7 of 22) 143359 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 339-306 chr20 10846593 10846886 + 2 NA Intergenic L1MB7|LINE|L1 62533 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 213-261 chr7 28262836 28263000 + 2 NA Intergenic MIR|SINE|MIR -36403 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 320-37 chr1 208574309 208574527 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -154270 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 300-159 chr17 79319270 79319548 + 2 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 196739 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 303-7 chr1 87162387 87162581 + 2 NA intron (NR_026989, intron 2 of 2) intron (NR_026989, intron 2 of 2) 30558 NR_026987 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 263-50 chr10 59639317 59639494 + 2 NA Intergenic AluJr|SINE|Alu 70486 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 649-107 chr8 55279857 55280360 + 2 NA intron (NM_052898, intron 1 of 2) Tigger19b|DNA|TcMar-Tigger 175213 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 355-514 chr8 134353663 134353844 + 2 NA Intergenic L1PA10|LINE|L1 -244318 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 370-473 chr9 70760910 70761150 + 2 NA intron (NM_001366143, intron 8 of 25) intron (NM_001366143, intron 8 of 25) 49054 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 286-433 chr7 97726665 97726843 + 2 NA Intergenic HAL1b|LINE|L1 -5332 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 372-28 chr1 188887120 188887364 + 2 NA Intergenic Intergenic 1443614 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 436-39 chr10 83697669 83697920 + 2 NA Intergenic UCON6|Unknown|Unknown -20705 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 207-296 chr8 102240101 102240255 + 2 NA intron (NR_125415, intron 1 of 2) intron (NR_125415, intron 1 of 2) 727 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 391-62 chr11 81249567 81249789 + 2 NA Intergenic Intergenic -486875 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 270-199 chr2 211802870 211803067 + 2 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 623392 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 323-443 chr6 1886095 1886289 + 2 NA intron (NM_001253846, intron 7 of 10) intron (NM_001253846, intron 7 of 10) 276277 NM_001453 2296 Hs.348883 NM_001453 ENSG00000054598 FOXC1 ARA|ASGD3|FKHL7|FREAC-3|FREAC3|IGDA|IHG1|IRID1|RIEG3 forkhead box C1 protein-coding 219-317 chr6 97617613 97617776 + 2 NA intron (NR_110757, intron 2 of 4) intron (NR_110757, intron 2 of 4) 312108 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 378-376 chr6 65660732 65661029 + 2 NA intron (NM_001292009, intron 1 of 43) intron (NM_001292009, intron 1 of 43) 46345 NM_001292009 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 655-15 chr10 48710220 48710593 + 2 NA intron (NM_020945, intron 2 of 61) MLT1A0|LTR|ERVL-MaLR 24943 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 461-71 chr13 63414599 63414981 + 2 NA Intergenic Intergenic -86696 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 338-238 chr19 52161095 52161327 + 2 NA intron (NM_001102657, intron 3 of 4) intron (NM_001102657, intron 3 of 4) 10410 NM_001102657 162962 Hs.631584 NM_001102657 ENSG00000196267 ZNF836 - zinc finger protein 836 protein-coding 308-545 chr9 137891689 137891959 + 2 NA non-coding (NR_121583, exon 1 of 4) non-coding (NR_121583, exon 1 of 4) 746 NR_121583 100133077 Hs.640081 NR_121583 ENSG00000203987 LOC100133077 - uncharacterized LOC100133077 ncRNA 570-160 chr5 91250825 91251341 + 2 NA Intergenic AluSz|SINE|Alu 63319 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 608-154 chr8 77785438 77785948 + 2 NA Intergenic L1PA12|LINE|L1 334996 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 176-127 chr7 15879467 15879617 + 2 NA Intergenic Intergenic 191164 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 261-295 chr4 142815394 142815646 + 2 NA intron (NM_001331040, intron 1 of 25) intron (NM_001331040, intron 1 of 25) 31015 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 396-26 chr1 187480974 187481284 + 2 NA Intergenic Intergenic 37501 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 385-185 chr2 147631759 147632011 + 2 NA Intergenic Intergenic -212632 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 351-317 chr3 167602185 167602524 + 2 NA intron (NM_001348951, intron 6 of 18) intron (NM_001348951, intron 6 of 18) 51588 NM_001366157 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 366-424 chr7 157963499 157963745 + 2 NA intron (NM_130843, intron 10 of 21) intron (NM_130843, intron 10 of 21) 109037 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 345-221 chr18 39834341 39834606 + 2 NA Intergenic MER39B|LTR|ERV1 -7236 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 513-195 chr3 185011869 185012297 + 2 NA intron (NM_001009921, intron 44 of 46) L1M4a1|LINE|L1 140977 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 817-28 chr20 51242495 51243238 + 2 NA Intergenic L1MEg|LINE|L1 210111 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 361-50 chr10 81804310 81804532 + 2 NA Intergenic Intergenic -70773 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 234-49 chr10 115989129 115989322 + 2 NA Intergenic Intergenic 205564 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 400-253 chr4 69667844 69668155 + 2 NA Intergenic Intergenic -14752 NM_001252274 10941 Hs.225950 NM_006798 ENSG00000173610 UGT2A1 UDPGT2A1 UDP glucuronosyltransferase family 2 member A1 complex locus protein-coding 410 chr1 14323452 14323697 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 96399 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 259-70 chr11 27817691 27817883 + 2 NA Intergenic L2a|LINE|L2 -95757 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 231-228 chr3 81090161 81090344 + 2 NA intron (NR_132411, intron 1 of 1) intron (NR_132411, intron 1 of 1) 96384 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 161-52 chr2 67663338 67663452 + 2 NA Intergenic Intergenic 162167 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 263-85 chr12 55303762 55304023 + 2 NA Intergenic Intergenic -8660 NM_001005493 283365 Hs.554555 NM_001005493 ENSG00000188324 OR6C6 - olfactory receptor family 6 subfamily C member 6 protein-coding 412-327 chr8 76268012 76268249 + 2 NA Intergenic L1MB2|LINE|L1 -138524 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 211-56 chr11 106657734 106657880 + 2 NA Intergenic Intergenic 360669 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 305-430 chr5 41341419 41341605 + 2 NA intron (NM_001005473, intron 2 of 2) intron (NM_001005473, intron 2 of 2) -80043 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 383-229 chr21 17088980 17089265 + 2 NA Intergenic Intergenic -349768 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 210-311 chr9 36022264 36022371 + 2 NA Intergenic Intergenic -14596 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 350-351 chr4 66016775 66016961 + 2 NA Intergenic Intergenic -259956 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 312-21 chr1 153291911 153292162 + 2 NA Intergenic L2b|LINE|L2 18682 NM_052891 114771 Hs.348266 NM_052891 ENSG00000159527 PGLYRP3 PGLYRPIalpha|PGRP-Ialpha|PGRPIA peptidoglycan recognition protein 3 protein-coding 330-307 chr2 197971667 197971912 + 2 NA intron (NM_006226, intron 1 of 5) HAL1b|LINE|L1 167196 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 227-229 chr3 88416428 88416614 + 2 NA intron (NM_001368168, intron 2 of 2) intron (NM_001368168, intron 2 of 2) 78065 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 246-87 chr12 20586506 20586701 + 2 NA intron (NM_001244683, intron 1 of 14) intron (NM_001244683, intron 1 of 14) 14739 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 255-3 chr1 77170621 77170854 + 2 NA intron (NM_005482, intron 3 of 10) intron (NM_005482, intron 3 of 10) 48693 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 299-505 chrX 142299135 142299336 + 2 NA Intergenic MIRb|SINE|MIR -93945 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 217-298 chr5 79716566 79716776 + 2 NA intron (NM_153610, intron 1 of 12) intron (NM_153610, intron 1 of 12) 26835 NM_153610 202333 Hs.482625 NM_153610 ENSG00000164309 CMYA5 C5orf10|SPRYD2|TRIM76 cardiomyopathy associated 5 protein-coding 295-333 chr4 56278837 56279011 + 2 NA intron (NM_020722, intron 3 of 10) L1M4|LINE|L1 108567 NM_001286670 132949 Hs.104347 NM_181806 ENSG00000157426 AASDH ACSF4|LYS2|NRPS1098|NRPS998 aminoadipate-semialdehyde dehydrogenase protein-coding 448-80 chr14 47440336 47440757 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -97300 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 293-397 chr7 31383958 31384193 + 2 NA Intergenic Intergenic -43349 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 239-221 chr21 25508109 25508259 + 2 NA Intergenic Intergenic -53961 NR_001458 114614 Hs.697120 NR_001458 ENSG00000234883 MIR155HG BIC|MIRHG2|NCRNA00172 MIR155 host gene ncRNA 294-268 chr21 22387879 22388171 + 2 NA Intergenic Intergenic 289408 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 729-76 chr8 54861036 54861483 + 2 NA Intergenic Intergenic -240769 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 221-130 chr19 22549000 22549213 + 2 NA Intergenic L1PA17|LINE|L1 16480 NR_110664 100128139 Hs.550683 NR_110663 ENSG00000269364 LINC01233 XLOC_013014 long intergenic non-protein coding RNA 1233 ncRNA 248-151 chr17 52843178 52843398 + 2 NA Intergenic Intergenic -18833 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 269-429 chr9 86194917 86195053 + 2 NA Intergenic Intergenic 61048 NM_001276368 389766 Hs.632073 NM_001010907 ENSG00000187753 C9orf153 bA507D14.1 chromosome 9 open reading frame 153 protein-coding 343-62 chr10 107802722 107802942 + 2 NA Intergenic Intergenic 266461 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 524-12 chr1 152091348 152091750 + 2 NA Intergenic Intergenic -2485 NM_001008536 126637 Hs.546477 NM_001008536 ENSG00000182898 TCHHL1 S100A17|THHL1 trichohyalin like 1 protein-coding 204-206 chr3 148421579 148421723 + 2 NA Intergenic L1MEf|LINE|L1 140760 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 326-536 chr8 90071032 90071276 + 2 NA intron (NM_001366795, intron 2 of 9) intron (NM_001366795, intron 2 of 9) 11725 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 473-49 chr11 104668564 104668947 + 2 NA Intergenic L2a|LINE|L2 -59453 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 294-186 chr19 27658154 27658333 + 2 NA Intergenic HSAT4|Satellite|centr -135188 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 274-254 chr3 2122434 2122648 + 2 NA intron (NR_046555, intron 2 of 2) L1ME4b|LINE|L1 21700 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 358-118 chr14 51969448 51969718 + 2 NA 3' UTR (NM_053064, exon 4 of 4) 3' UTR (NM_053064, exon 4 of 4) -19963 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 332-343 chr3 120529260 120529520 + 2 NA Intergenic L1MEg|LINE|L1 -66946 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 475-148 chr2 146712903 146713355 + 2 NA Intergenic L1MEd|LINE|L1 126072 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 585-128 chr5 96207189 96207612 + 2 NA intron (NR_130776, intron 1 of 4) L1PA15|LINE|L1 128262 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 129-77 chr8 118128559 118128678 + 2 NA Intergenic Intergenic -16799 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 261-233 chr3 29827301 29827548 + 2 NA intron (NM_001003792, intron 6 of 13) intron (NM_001003792, intron 6 of 13) 106732 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 263-6 chr1 59937479 59937676 + 2 NA Intergenic L1M1|LINE|L1 -10779 NR_134982 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 423-7 chr1 81419619 81419900 + 2 NA intron (NM_001366004, intron 2 of 27) intron (NM_001366004, intron 2 of 27) 113364 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 317-472 chr8 26145618 26145800 + 2 NA Intergenic Intergenic -100296 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 253-165 chr18 30487012 30487177 + 2 NA Intergenic Intergenic 188184 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 398-324 chr7 53409776 53410104 + 2 NA Intergenic L1MC3|LINE|L1 374307 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 333-93 chr11 80078854 80079092 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -637943 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 248-54 chr10 106052064 106052195 + 2 NA Intergenic L1MA8|LINE|L1 -88036 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 566-211 chr9 107198980 107199382 + 2 NA Intergenic LTR82A|LTR|ERVL -84098 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 239-407 chr8 87621717 87621888 + 2 NA Intergenic Intergenic 252213 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 214-296 chr7 43318414 43318619 + 2 NA intron (NM_001287059, intron 3 of 27) intron (NM_001287059, intron 3 of 27) 167621 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 247-168 chr18 60348910 60349111 + 2 NA Intergenic Intergenic 23765 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 404-172 chr2 125052044 125052326 + 2 NA Intergenic MIR|SINE|MIR 1026898 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 248-208 chr2 199392985 199393162 + 2 NA intron (NM_001172509, intron 3 of 10) MIRc|SINE|MIR 64866 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 364-265 chr3 5531860 5532174 + 2 NA Intergenic L1PA13|LINE|L1 -281762 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 327-157 chr14 82012937 82013256 + 2 NA Intergenic L1PA15-16|LINE|L1 -269958 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 347-501 chr8 67500189 67500451 + 2 NA intron (NM_020361, intron 6 of 10) L1MD|LINE|L1 156486 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 477-243 chr6 71575345 71575733 + 2 NA Intergenic Intergenic 154512 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 378-61 chr10 78149268 78149491 + 2 NA Intergenic Intergenic -99246 NR_038985 100132987 Hs.55047 NR_038985 ENSG00000230417 LINC00856 - long intergenic non-protein coding RNA 856 ncRNA 564-75 chr17 63307099 63307627 + 2 NA intron (NM_025185, intron 8 of 25) intron (NM_025185, intron 8 of 25) 132904 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 381-296 chr5 15448602 15448834 + 2 NA Intergenic AluSz6|SINE|Alu -51462 NM_012304 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 670-97 chr5 92554674 92555289 + 2 NA Intergenic Intergenic 1016362 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 619-6 chr1 85004850 85005236 + 2 NA Intergenic L1PB1|LINE|L1 -7930 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 433-310 chrX 98530823 98531223 + 2 NA Intergenic Intergenic -966488 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 520-248 chr5 146625671 146626028 + 2 NA intron (NM_181678, intron 8 of 10) MLT1D|LTR|ERVL-MaLR -109736 NM_194251 134391 Hs.483732 NM_194251 ENSG00000173250 GPR151 GALR4|GALRL|GPCR|GPCR-2037|PGR7 G protein-coupled receptor 151 protein-coding 421-31 chr10 76504822 76505216 + 2 NA intron (NM_001305581, intron 6 of 6) L1PA16|LINE|L1 -383025 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 457-196 chr5 30125058 30125362 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 244650 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 549-106 chr2 51686922 51687347 + 2 NA intron (NR_135237, intron 5 of 10) L1M3|LINE|L1 654533 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 317-462 chr7 100953264 100953459 + 2 NA exon (NM_005960, exon 2 of 12) exon (NM_005960, exon 2 of 12) 3827 NM_005960 4584 Hs.703577 NM_005960 ENSG00000169894 MUC3A MUC-3A|MUC3 mucin 3A, cell surface associated protein-coding 298-110 chr14 27999233 27999436 + 2 NA Intergenic Intergenic -326113 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 513-191 chr3 167231883 167232188 + 2 NA Intergenic Intergenic 148248 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 391-313 chr6 121229830 121230049 + 2 NA intron (NR_104452, intron 20 of 35) THE1D|LTR|ERVL-MaLR 104541 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 406-284 chr7 157947042 157947301 + 2 NA intron (NM_130843, intron 10 of 21) intron (NM_130843, intron 10 of 21) 92586 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 337-107 chr12 16626365 16626636 + 2 NA Intergenic Intergenic -18286 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 305-343 chr3 56760642 56760908 + 2 NA intron (NM_001128615, intron 5 of 12) intron (NM_001128615, intron 5 of 12) 14942 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 347-159 chr15 92189046 92189283 + 2 NA Intergenic Intergenic -204717 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 434-293 chr8 123563564 123563974 + 2 NA Intergenic Intergenic -22563 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 339-76 chr10 111419728 111419990 + 2 NA Intergenic Intergenic 305568 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 582-48 chr16 46519214 46519609 + 2 NA intron (NR_026556, intron 8 of 16) intron (NR_026556, intron 8 of 16) 49686 NR_026556 124149 Hs.97414 NM_001004299 ANKRD26P1 - ankyrin repeat domain 26 pseudogene 1 pseudo 255-40 chr10 112018972 112019212 + 2 NA Intergenic MIR|SINE|MIR 164673 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 214-353 chr9 84403949 84404100 + 2 NA Intergenic Intergenic -35297 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 357-477 chr9 31262403 31262701 + 2 NA Intergenic L1M5|LINE|L1 118938 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 235-187 chr2 175352731 175352945 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -171128 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 178-16 chr10 33688454 33688619 + 2 NA Intergenic L1ME1|LINE|L1 84144 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 380-66 chr11 54820128 54820456 + 2 NA Intergenic ALR/Alpha|Satellite|centr 113460 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 339-150 chr14 44396831 44397052 + 2 NA Intergenic Intergenic 110342 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 572-93 chr2 135413258 135413693 + 2 NA intron (NM_001286569, intron 2 of 21) intron (NM_001286569, intron 2 of 21) 117110 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 279-173 chr2 58300701 58300974 + 2 NA Intergenic Intergenic 24960 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 753-60 chr8 134429409 134429832 + 2 NA Intergenic Intergenic -168451 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 328-83 chr11 48223598 48223855 + 2 NA Intergenic Intergenic 6916 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 406-104 chr16 50534994 50535220 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -13289 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 511-49 chr12 48886055 48886421 + 2 NA Intergenic AluJr|SINE|Alu -17895 NM_001286957 85478 Hs.512805 NM_033124 ENSG00000139537 CCDC65 CFAP250|DRC2|FAP250|NYD-SP28 coiled-coil domain containing 65 protein-coding 333-210 chr19 9143133 9143407 + 2 NA intron (NR_102435, intron 1 of 6) L1MEd|LINE|L1 2873 NM_020933 57693 Hs.465829 NM_020933 ENSG00000130803 ZNF317 - zinc finger protein 317 protein-coding 480-205 chr4 15171280 15171666 + 2 NA intron (NR_125911, intron 2 of 5) intron (NR_125911, intron 2 of 5) -168515 NM_001135170 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 319-246 chr2 79244641 79244890 + 2 NA Intergenic Intergenic -85012 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 162-32 chr13 88247043 88247154 + 2 NA Intergenic Intergenic 104231 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 421-48 chr12 7579410 7579773 + 2 NA Intergenic L1PB|LINE|L1 -75773 NM_203416 9332 Hs.504641 NM_004244 ENSG00000177575 CD163 M130|MM130|SCARI1 CD163 molecule protein-coding 313-500 chr7 62808447 62808737 + 2 NA Intergenic ALR/Alpha|Satellite|centr 495464 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 347-349 chr4 75467178 75467373 + 2 NA Intergenic MER33|DNA|hAT-Charlie 42021 NR_103725 25898 Hs.48297 NM_015436 ENSG00000163743 RCHY1 ARNIP|CHIMP|PIRH2|PRO1996|RNF199|ZCHY|ZNF363 ring finger and CHY zinc finger domain containing 1 protein-coding 521-124 chr2 117338433 117338794 + 2 NA Intergenic MLT1L-int|LTR|ERVL-MaLR -476078 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 345-31 chr1 184107527 184107795 + 2 NA Intergenic L1PREC2|LINE|L1 55931 NM_001300766 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 412-249 chr5 13852073 13852305 + 2 NA intron (NM_001369, intron 30 of 78) AluSp|SINE|Alu 92291 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 628-114 chr6 66514007 66514423 + 2 NA Intergenic MIR3|SINE|MIR 726336 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 326-120 chr12 14575185 14575445 + 2 NA intron (NR_120465, intron 2 of 5) intron (NR_120465, intron 2 of 5) -7432 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 217-182 chr2 116672100 116672261 + 2 NA Intergenic Intergenic -1142511 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 318-17 chr1 68854607 68854918 + 2 NA Intergenic L1PA10|LINE|L1 -201136 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 411-124 chr17 82517830 82518208 + 2 NA Intergenic Intergenic -1713 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 327-434 chr6 48942737 48943046 + 2 NA Intergenic Intergenic 520362 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 264-51 chr10 68738990 68739127 + 2 NA intron (NR_104262, intron 4 of 23) intron (NR_104262, intron 4 of 23) -16114 NR_003076 692211 NR_003076 ENSG00000283551 SNORD98 HBII-419 small nucleolar RNA, C/D box 98 snoRNA 315-472 chr8 66261387 66261666 + 2 NA Intergenic L1MA8|LINE|L1 69412 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 290-395 chr6 122149621 122149908 + 2 NA Intergenic L1MC|LINE|L1 -249787 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 157-62 chr2 83593831 83593939 + 2 NA Intergenic L1MB5|LINE|L1 71071 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 348-290 chr3 36243370 36243633 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -136986 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 303-120 chr14 53316773 53317068 + 2 NA Intergenic L1PB2|LINE|L1 163566 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 370-324 chr3 190870783 190871002 + 2 NA Intergenic Intergenic -7038 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 208-257 chr8 26641134 26641279 + 2 NA intron (NM_001244604, intron 8 of 13) intron (NM_001244604, intron 8 of 13) 62801 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 247-191 chr2 57413652 57413811 + 2 NA Intergenic L1MA2|LINE|L1 -493920 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 200-273 chr8 109898910 109899040 + 2 NA Intergenic L1M8|LINE|L1 76796 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 277-169 chr19 28747901 28748067 + 2 NA Intergenic Intergenic -20290 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 314-158 chr13 111861048 111861347 + 2 NA Intergenic Intergenic -32181 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 292-353 chr5 72844242 72844508 + 2 NA intron (NM_001364292, intron 1 of 24) L2c|LINE|L2 -3764 NM_001364293 3842 Hs.482497 NM_002270 ENSG00000083312 TNPO1 IPO2|KPNB2|MIP|MIP1|TRN transportin 1 protein-coding 277-394 chr7 156125984 156126161 + 2 NA Intergenic Intergenic 163440 NM_001291913 389602 Hs.583071 NM_001291913 LOC389602 - uncharacterized LOC389602 protein-coding 259-141 chr15 87141542 87141723 + 2 NA Intergenic Intergenic -153206 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 251-238 chr3 100501537 100501695 + 2 NA intron (NM_018004, intron 1 of 5) intron (NM_018004, intron 1 of 5) 8997 NM_018004 55076 Hs.658956 NM_018004 ENSG00000181458 TMEM45A DERP7|DNAPTP4 transmembrane protein 45A protein-coding 526-89 chr16 53182707 53183127 + 2 NA intron (NM_001352127, intron 2 of 38) intron (NM_001352127, intron 2 of 38) -25048 NM_001352156 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 346-535 chr9 131329627 131329867 + 2 NA Intergenic Intergenic 40024 NM_032728 84814 Hs.134292 NM_032728 ENSG00000160539 PLPP7 C9orf67|NET39|PPAPDC3 phospholipid phosphatase 7 (inactive) protein-coding 316-484 chr6 61691880 61692075 + 2 NA intron (NR_146874, intron 8 of 13) intron (NR_146874, intron 8 of 13) 117847 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 364-231 chr2 166101814 166102029 + 2 NA intron (NR_110260, intron 2 of 11) L1PA15|LINE|L1 20390 NR_110260 101929680 Hs.662210 NR_110260 ENSG00000236107 SCN1A-AS1 - SCN1A and SCN9A antisense RNA 1 ncRNA 333-327 chr22 25640080 25640272 + 2 NA intron (NM_001362778, intron 2 of 19) L1ME2|LINE|L1 75501 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 518-317 chr9 99443547 99444038 + 2 NA Intergenic MIRc|SINE|MIR -68535 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 385-142 chr18 7614067 7614353 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 46894 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 312-41 chr10 54156439 54156643 + 2 NA intron (NM_001354411, intron 14 of 34) THE1B|LTR|ERVL-MaLR -329689 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 280-307 chr5 8027840 8028022 + 2 NA Intergenic Intergenic 158783 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 505-210 chr4 30883991 30884403 + 2 NA intron (NM_032457, intron 1 of 2) MIR|SINE|MIR 163828 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 789-36 chr5 18950257 18950802 + 2 NA Intergenic L1MA4A|LINE|L1 935743 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 308-447 chr7 4671469 4671683 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -10719 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 328-126 chr13 37532337 37532652 + 2 NA Intergenic L1MEg|LINE|L1 -2446 NR_040244 400121 Hs.558894 NR_040244 ENSG00000275226 LINC00547 - long intergenic non-protein coding RNA 547 ncRNA 344-48 chr10 43558183 43558421 + 2 NA intron (NM_001099283, intron 1 of 1) intron (NM_001099283, intron 1 of 1) 10157 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 283-447 chr8 136350447 136350659 + 2 NA Intergenic Intergenic -180245 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 734-61 chr5 79507287 79507839 + 2 NA intron (NM_001277078, intron 1 of 5) intron (NM_001277078, intron 1 of 5) 6273 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 312-394 chr4 173742767 173743058 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -154361 NR_146487 101928478 NR_146487 ENSG00000250708 LINC02269 - long intergenic non-protein coding RNA 2269 ncRNA 264-220 chr2 163058437 163058675 + 2 NA Intergenic Intergenic -219789 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 522-115 chr19 9293258 9293665 + 2 NA 3' UTR (NM_198535, exon 6 of 6) 3' UTR (NM_198535, exon 6 of 6) 16377 NM_198535 374879 Hs.633842 NM_198535 ENSG00000196110 ZNF699 hang zinc finger protein 699 protein-coding 240-340 chr5 3344407 3344573 + 2 NA Intergenic Intergenic -108326 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 160-87 chr5 35515921 35516047 + 2 NA Intergenic MER50|LTR|ERV1 -101879 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 192-53 chr12 107977666 107977787 + 2 NA Intergenic Intergenic -73955 NR_037629 728739 Hs.741995 NR_037629 LOC728739 - programmed cell death 2 pseudogene pseudo 277-392 chr7 143167311 143167571 + 2 NA intron (NM_001130026, intron 8 of 10) L1M3|LINE|L1 -15978 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 509-258 chr8 112893672 112893974 + 2 NA intron (NM_001363185, intron 8 of 66) Tigger11a|DNA|TcMar-Tigger 250330 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 159-72 chr5 10659641 10659753 + 2 NA Intergenic Intergenic 95627 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 499-257 chr8 35843542 35843954 + 2 NA Intergenic L1MA8|LINE|L1 -133428 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 399-310 chr8 102018045 102018365 + 2 NA intron (NM_001040624, intron 3 of 7) L1ME1|LINE|L1 33773 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 194-55 chr14 51466167 51466355 + 2 NA intron (NR_051990, intron 2 of 2) L1ME1|LINE|L1 -22867 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 334-314 chr21 7258095 7258375 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -172402 NM_001322044 102724219 Hs.743984 NM_001322044 LOC102724219 - uncharacterized LOC102724219 protein-coding 297-427 chr7 22407773 22407965 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -50715 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 282-44 chr10 52547303 52547577 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -76907 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 246-184 chr2 17075279 17075435 + 2 NA Intergenic Intergenic -409523 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 203-36 chr11 59412845 59413007 + 2 NA Intergenic Intergenic 10027 NM_001001954 219981 Hs.553648 NM_001001954 ENSG00000172324 OR5A2 - olfactory receptor family 5 subfamily A member 2 protein-coding 443-122 chr17 62938621 62938870 + 2 NA Intergenic L1ME1|LINE|L1 -5470 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 293-336 chr5 56820517 56820704 + 2 NA intron (NM_005921, intron 1 of 19) intron (NM_005921, intron 1 of 19) 5061 NM_005921 4214 Hs.653654 NM_005921 ENSG00000095015 MAP3K1 MAPKKK1|MEKK|MEKK 1|MEKK1|SRXY6 mitogen-activated protein kinase kinase kinase 1 protein-coding 256-25 chr1 189890837 189890987 + 2 NA Intergenic Intergenic 585098 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 185-112 chr2 185695880 185696006 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 42776 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 362-256 chr22 27038407 27038644 + 2 NA Intergenic L2b|LINE|L2 21993 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 338-326 chr3 39236226 39236419 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 43714 NM_001337 1524 Hs.78913 NM_001337 ENSG00000168329 CX3CR1 CCRL1|CMKBRL1|CMKDR1|GPR13|GPRV28|V28 C-X3-C motif chemokine receptor 1 protein-coding 263-237 chr21 22667238 22667449 + 2 NA Intergenic Intergenic -411941 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 487-59 chr11 75675187 75675508 + 2 NA Intergenic FAM|SINE|Alu -6913 NM_207577 4135 Hs.585540 NM_033063 ENSG00000171533 MAP6 MAP6-N|MTAP6|N-STOP|STOP microtubule associated protein 6 protein-coding 305-285 chr2 183399409 183399585 + 2 NA Intergenic L1PREC2|LINE|L1 275054 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 359-499 chr8 139492106 139492349 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 210896 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 205-149 chr2 133725422 133725597 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -157046 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 456-48 chr11 81286667 81286971 + 2 NA Intergenic Intergenic -524016 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 250-270 chr3 28869896 28870117 + 2 NA Intergenic Intergenic 294728 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 277-325 chr5 63369705 63369938 + 2 NA Intergenic L1ME2|LINE|L1 592471 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 330-402 chr5 7649750 7649925 + 2 NA intron (NM_020546, intron 4 of 24) L2|LINE|L2 201296 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 243-432 chr7 124351323 124351531 + 2 NA intron (NR_110180, intron 1 of 3) intron (NR_110180, intron 1 of 3) 669 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 292-400 chr7 22171915 22172150 + 2 NA intron (NM_001367603, intron 1 of 5) intron (NM_001367603, intron 1 of 5) 21713 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 673-72 chr21 24365134 24365698 + 2 NA Intergenic Intergenic -44039 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 517-45 chr11 59467243 59467701 + 2 NA Intergenic L1MA4|LINE|L1 -9958 NM_001004705 390197 Hs.553756 NM_001004705 ENSG00000254466 OR4D10 OR11-251|OR4D10P|OST711 olfactory receptor family 4 subfamily D member 10 protein-coding 302-489 chr9 118206060 118206316 + 2 NA Intergenic Intergenic -473483 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 364-185 chr18 40653306 40653510 + 2 NA Intergenic Intergenic 587122 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 483-156 chr22 47076913 47077276 + 2 NA intron (NM_001284305, intron 11 of 12) MLT1J|LTR|ERVL-MaLR -161052 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 429-148 chr2 58286583 58286945 + 2 NA intron (NR_147010, intron 1 of 2) L1ME4c|LINE|L1 10887 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 269-102 chr13 22386256 22386463 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 176074 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 353-220 chr19 12203787 12204013 + 2 NA intron (NR_104179, intron 1 of 1) AluSz|SINE|Alu 8885 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 460-235 chr5 23406010 23406330 + 2 NA Intergenic Intergenic -101439 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 198-120 chr2 59693771 59693925 + 2 NA Intergenic L2a|LINE|L2 476140 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 260-266 chr3 58233342 58233472 + 2 NA Intergenic Intergenic -4095 NM_020676 57406 Hs.476454 NM_020676 ENSG00000163686 ABHD6 - abhydrolase domain containing 6 protein-coding 373-390 chr7 78885553 78885814 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -123305 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 333-447 chr5 52531290 52531530 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -256506 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 180-30 chr11 104759385 104759542 + 2 NA Intergenic L1M2|LINE|L1 139207 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 311-165 chr15 93410169 93410384 + 2 NA Intergenic AluSg4|SINE|Alu 204210 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 314-280 chr2 61183480 61183704 + 2 NA non-coding (NR_152213, exon 3 of 7) non-coding (NR_152213, exon 3 of 7) 6174 NR_152211 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 253-110 chr12 112190030 112190203 + 2 NA intron (NM_001109662, intron 60 of 75) L1ME2z|LINE|L1 -26795 NR_106921 102465519 NR_106921 ENSG00000283793 MIR6861 hsa-mir-6861 microRNA 6861 ncRNA 673-11 chr10 17932689 17933194 + 2 NA Intergenic Intergenic -18898 NM_001282734 221074 Hs.350895 NM_152725 ENSG00000148482 SLC39A12 LZT-Hs8|ZIP-12|bA570F3.1 solute carrier family 39 member 12 protein-coding 399-145 chr2 60197992 60198236 + 2 NA Intergenic L1MC3|LINE|L1 184922 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 331-270 chr2 78608398 78608690 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 63013 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 555-48 chr13 47733711 47734135 + 2 NA Intergenic L1MB4|LINE|L1 198699 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 362-246 chr20 7383968 7384222 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 12487 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 214-139 chr18 7743129 7743255 + 2 NA intron (NM_002845, intron 1 of 30) MIRc|SINE|MIR 175876 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 386-363 chr8 131832733 131832991 + 2 NA Intergenic Intergenic -71231 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 326-481 chr7 8473223 8473483 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 39744 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 337-477 chr6 36537183 36537354 + 2 NA intron (NM_007271, intron 2 of 13) L1ME2z|LINE|L1 10211 NM_007271 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 328-496 chr6 47004445 47004620 + 2 NA intron (NM_153840, intron 13 of 14) intron (NM_153840, intron 13 of 14) 37800 NM_025048 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 198-195 chr5 28095239 28095401 + 2 NA Intergenic Intergenic 192345 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 574-148 chr6 36333607 36334055 + 2 NA intron (NM_001010903, intron 1 of 11) intron (NM_001010903, intron 1 of 11) 3057 NM_001010903 389384 Hs.162104 NM_001010903 ENSG00000189325 BNIP5 C6orf222 BCL2 interacting protein 5 protein-coding 261-27 chr1 224901155 224901390 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -28382 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 346-406 chr5 141343751 141344040 + 2 NA promoter-TSS (NM_032011) promoter-TSS (NM_032011) 66 NM_018916 56112 Hs.368160 NM_018916 ENSG00000254245 PCDHGA3 PCDH-GAMMA-A3 protocadherin gamma subfamily A, 3 protein-coding 380-233 chr22 33405830 33406147 + 2 NA intron (NM_133642, intron 7 of 14) intron (NM_133642, intron 7 of 14) 30681 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 345-278 chr2 122972877 122973172 + 2 NA Intergenic Intergenic 100457 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 277-165 chr18 61168441 61168710 + 2 NA Intergenic Intergenic -164855 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 420-249 chr6 45786900 45787123 + 2 NA Intergenic Intergenic 150586 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 509-124 chr2 155067750 155068140 + 2 NA Intergenic L1PB3|LINE|L1 369250 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 290-414 chr7 35345172 35345457 + 2 NA intron (NR_038864, intron 1 of 2) L1ME2|LINE|L1 31459 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 765-58 chr5 74003877 74004506 + 2 NA Intergenic L1MEc|LINE|L1 190645 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 837-29 chr3 141168819 141169542 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -62645 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 136-74 chr6 12117937 12118034 + 2 NA intron (NM_002114, intron 3 of 8) intron (NM_002114, intron 3 of 8) 105673 NM_002114 3096 Hs.567284 NM_002114 ENSG00000095951 HIVEP1 CIRIP|CRYBP1|GAAP|MBP-1|PRDII-BF1|Schnurri-1|ZAS1|ZNF40|ZNF40A human immunodeficiency virus type I enhancer binding protein 1 protein-coding 545-33 chr10 128505668 128506194 + 2 NA Intergenic L1MC5a|LINE|L1 219981 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 292-43 chr10 55880145 55880400 + 2 NA Intergenic Intergenic -252330 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 205-90 chr14 66579258 66579421 + 2 NA intron (NM_001024218, intron 1 of 21) L1M1|LINE|L1 71932 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 322-22 chr1 113670340 113670586 + 2 NA intron (NM_001142782, intron 16 of 20) intron (NM_001142782, intron 16 of 20) 88692 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 263-153 chr17 58910060 58910224 + 2 NA intron (NM_014906, intron 1 of 6) AluSx1|SINE|Alu 154273 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 253-71 chr11 39832245 39832379 + 2 NA Intergenic AluSp|SINE|Alu 460818 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 321-465 chr5 64381757 64381964 + 2 NA Intergenic FRAM|SINE|Alu -124155 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 363-478 chr9 84598762 84599067 + 2 NA Intergenic Intergenic -69544 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 221-308 chr8 125983370 125983520 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -32248 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 524-40 chr11 75102698 75103142 + 2 NA Intergenic AluSx|SINE|Alu -6030 NM_001005285 341152 Hs.554515 NM_001005285 ENSG00000171561 OR2AT4 OR11-265 olfactory receptor family 2 subfamily AT member 4 protein-coding 262-166 chr17 34928705 34928927 + 2 NA intron (NM_006584, intron 13 of 13) intron (NM_006584, intron 13 of 13) 32644 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 244-222 chr3 34877870 34878076 + 2 NA intron (NR_110817, intron 3 of 3) THE1C|LTR|ERVL-MaLR 516050 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 185-66 chr15 25697948 25698045 + 2 NA intron (NM_024490, intron 13 of 20) L1ME1|LINE|L1 150829 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 284-384 chr7 62598068 62598266 + 2 NA Intergenic ALR/Alpha|Satellite|centr 705889 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 347-457 chr7 20616614 20616811 + 2 NA intron (NM_001163941, intron 1 of 27) L2a|LINE|L2 1045 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 226-264 chr4 157640442 157640633 + 2 NA Intergenic L1MEg|LINE|L1 68047 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 218-342 chr8 142586283 142586454 + 2 NA Intergenic L2c|LINE|L2 28111 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 433-48 chr11 80339024 80339390 + 2 NA Intergenic Intergenic 423596 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 367-395 chr6 76200085 76200294 + 2 NA Intergenic L1MEh|LINE|L1 -127511 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 214-44 chr10 77627349 77627516 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 10376 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 303-182 chr19 27500276 27500455 + 2 NA Intergenic ALR/Alpha|Satellite|centr -293066 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 369-209 chr2 117500364 117500613 + 2 NA Intergenic (TAATTTA)n|Simple_repeat|Simple_repeat -314203 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 423-281 chr7 132464542 132464949 + 2 NA intron (NM_001105543, intron 3 of 3) intron (NM_001105543, intron 3 of 3) 111725 NM_001105543 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 263-423 chr8 98278523 98278713 + 2 NA intron (NR_135747, intron 1 of 11) L2c|LINE|L2 15617 NM_024759 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 422-319 chrX 102692908 102693303 + 2 NA intron (NR_146585, intron 2 of 6) L1MC5a|LINE|L1 -18945 NR_146587 100528062 Hs.522729 NM_001199818 ENSG00000286237 ARMCX5-GPRASP2 ARMCX5-GPRASP2-BHLHB9-LINC00630|bHLHb9|p60TRP ARMCX5-GPRASP2 readthrough protein-coding 293-487 chrX 67487178 67487361 + 2 NA Intergenic L1MC|LINE|L1 -56752 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 333-15 chr1 63431363 63431529 + 2 NA intron (NM_013339, intron 14 of 14) AluSx3|SINE|Alu 63819 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 334-25 chr1 157794853 157795171 + 2 NA 3' UTR (NM_001159398, exon 11 of 11) 3' UTR (NM_001159398, exon 11 of 11) -17880 NR_125358 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 441-124 chr2 55302422 55302775 + 2 NA intron (NM_018084, intron 25 of 31) intron (NM_018084, intron 25 of 31) 20279 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 289-89 chr11 114905969 114906182 + 2 NA Intergenic L1MA3|LINE|L1 227548 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 310-109 chr12 126149970 126150185 + 2 NA Intergenic Intergenic 54085 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 293-297 chr4 55952864 55953032 + 2 NA intron (NM_025009, intron 2 of 25) Tigger3a|DNA|TcMar-Tigger 4003 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 397-31 chr10 58333719 58333975 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -1132 NM_001204880 7321 Hs.129683 NM_003338 ENSG00000072401 UBE2D1 E2(17)KB1|SFT|UBC4/5|UBCH5|UBCH5A ubiquitin conjugating enzyme E2 D1 protein-coding 308-367 chr5 2507256 2507417 + 2 NA Intergenic AluSx|SINE|Alu -195135 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 504-152 chr21 10381217 10381566 + 2 NA Intergenic AluSc8|SINE|Alu -32129 NM_001187 574 Hs.545789 NM_001187 BAGE BAGE1|CT2.1 B melanoma antigen protein-coding 311-243 chr2 41737914 41738194 + 2 NA Intergenic Intergenic -139501 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 392-353 chr9 117830654 117830869 + 2 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat 126358 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 288-253 chr3 27583900 27584153 + 2 NA Intergenic AluSx|SINE|Alu -99642 NM_001321104 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 565 chr1 28725351 28725894 + 2 NA Intergenic MIRb|SINE|MIR -10999 NM_001173128 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 270-319 chr5 141422488 141422740 + 2 NA exon (NM_032091, exon 1 of 1) exon (NM_032091, exon 1 of 1) 1563 NM_018914 56105 Hs.368160 NM_018914 ENSG00000253873 PCDHGA11 PCDH-GAMMA-A11 protocadherin gamma subfamily A, 11 protein-coding 439-37 chr10 78546511 78546845 + 2 NA Intergenic Intergenic 279336 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 126-66 chr9 118873306 118873388 + 2 NA Intergenic Intergenic 193676 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 463-69 chr12 58626595 58626918 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 35054 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 378-223 chr2 51625059 51625386 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 592621 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 292-77 chr11 75938553 75938841 + 2 NA intron (NM_003369, intron 6 of 14) L1MEc|LINE|L1 123487 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 159-4 chr1 102479394 102479497 + 2 NA Intergenic Intergenic -482211 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 306-2 chr1 32958077 32958352 + 2 NA intron (NM_153341, intron 1 of 8) MER103C|DNA|hAT-Charlie 6595 NM_001300826 127544 Hs.591504 NM_153341 ENSG00000116514 RNF19B IBRDC3|NKLAM ring finger protein 19B protein-coding 314-88 chr11 26443931 26444191 + 2 NA intron (NM_031418, intron 3 of 26) intron (NM_031418, intron 3 of 26) -29841 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 242-373 chr7 69200088 69200314 + 2 NA Intergenic Intergenic 397423 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 180-114 chr4 46434651 46434757 + 2 NA Intergenic L1MA9|LINE|L1 -44576 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 809-18 chr19 37829714 37830262 + 2 NA intron (NR_040015, intron 4 of 5) intron (NR_040015, intron 4 of 5) 12577 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 527-18 chr1 238168924 238169268 + 2 NA Intergenic Intergenic -278174 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 196-128 chr2 79931137 79931292 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -64631 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 161-83 chr5 29356127 29356254 + 2 NA Intergenic L1MEg|LINE|L1 39786 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 434-307 chr8 143831128 143831505 + 2 NA Intergenic Intergenic -2001 NM_001271098 22827 Hs.521924 NM_014281 ENSG00000179950 PUF60 FIR|RoBPI|SIAHBP1|VRJS poly(U) binding splicing factor 60 protein-coding 341-561 chr9 28002849 28003129 + 2 NA intron (NM_001354574, intron 5 of 5) MER6|DNA|TcMar-Tigger -429123 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 371-25 chr1 198335396 198335598 + 2 NA Intergenic L1PA12|LINE|L1 178499 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 193-110 chr2 107389201 107389362 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -39756 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 334-268 chr2 78580786 78580981 + 2 NA Intergenic L1M5|LINE|L1 35352 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 183-73 chr2 45314190 45314334 + 2 NA Intergenic L2-3_Crp|LINE|L2 -59321 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 315-232 chr2 44997019 44997176 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 12355 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 746-77 chr8 33741156 33741641 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -141292 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 358-107 chr13 64310947 64311156 + 2 NA Intergenic Intergenic -235040 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 252-317 chr5 14537806 14537984 + 2 NA Intergenic L1M2|LINE|L1 -43897 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 436-302 chr8 82685766 82686035 + 2 NA Intergenic L1M7|LINE|L1 -226204 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 338-414 chr5 16983929 16984105 + 2 NA Intergenic Intergenic -47729 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 140-36 chr2 6213412 6213487 + 2 NA Intergenic Plat_L3|LINE|CR1 161973 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 290-373 chr5 162028692 162028875 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -27587 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 246-283 chr4 10951893 10952047 + 2 NA Intergenic Intergenic -267202 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 371-411 chr9 28279989 28280278 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 439172 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 152-97 chr9 25038739 25038861 + 2 NA Intergenic Intergenic -492903 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 533-223 chr7 146888267 146888732 + 2 NA intron (NM_014141, intron 2 of 22) L3|LINE|CR1 114228 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 409-246 chr5 46091557 46091865 + 2 NA Intergenic ALR/Alpha|Satellite|centr -395331 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 342-334 chr3 148677594 148677919 + 2 NA Intergenic Intergenic -20115 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 174-38 chr13 83886444 83886599 + 2 NA Intergenic Intergenic -4047 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 354-250 chr2 224312516 224312703 + 2 NA Intergenic Intergenic 89385 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 210-6 chr1 78386427 78386573 + 2 NA Intergenic Intergenic -104474 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 415-291 chr8 117879602 117879884 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) 41170 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 320-518 chr7 89261830 89262124 + 2 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -466240 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 250-369 chr6 4530728 4530875 + 2 NA Intergenic Intergenic 42003 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 254-414 chr8 100484916 100485113 + 2 NA Intergenic Intergenic 74745 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 206-92 chr17 10991191 10991388 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -153202 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 594-22 chr11 7412011 7412427 + 2 NA intron (NM_175733, intron 3 of 6) L1MA4A|LINE|L1 53616 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 320-428 chr5 28118424 28118669 + 2 NA Intergenic MER110-int|LTR|ERV1 169119 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 246-261 chr3 95968595 95968785 + 2 NA Intergenic Intergenic -285497 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 467-60 chr12 2616410 2616702 + 2 NA intron (NM_001129840, intron 29 of 46) intron (NM_001129840, intron 29 of 46) 55664 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 451-160 chr4 19877166 19877428 + 2 NA Intergenic Intergenic -374608 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 530-59 chr12 73412801 73413176 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 253798 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 286-385 chr6 46251883 46252115 + 2 NA intron (NM_001251973, intron 2 of 4) intron (NM_001251973, intron 2 of 4) -24325 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 163-61 chr19 36413430 36413564 + 2 NA intron (NM_001321917, intron 1 of 4) L1ME4a|LINE|L1 5147 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 286-86 chr12 25910467 25910735 + 2 NA Intergenic Intergenic -36522 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 403-140 chr18 59768871 59769187 + 2 NA Intergenic Intergenic -71606 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 192-161 chr5 41180667 41180852 + 2 NA intron (NM_000065, intron 7 of 17) L1MEj|LINE|L1 32773 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 275-98 chr14 25278687 25278890 + 2 NA Intergenic LTR88b|LTR|Gypsy? -228491 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 333-127 chr13 25644149 25644345 + 2 NA intron (NM_016529, intron 24 of 36) L1ME3F|LINE|L1 175473 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 351-73 chr11 80404267 80404489 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 358425 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 608-142 chr7 28791545 28791945 + 2 NA intron (NM_001011666, intron 3 of 6) intron (NM_001011666, intron 3 of 6) 105612 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 303-294 chr3 133016854 133017097 + 2 NA Intergenic Intergenic -21313 NM_001136469 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 291-417 chr7 64518765 64518941 + 2 NA Intergenic L1MA8|LINE|L1 44218 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 200-294 chrX 80625169 80625323 + 2 NA Intergenic Intergenic 184631 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 279-342 chr5 142029120 142029377 + 2 NA Intergenic Intergenic -16221 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 250-278 chr3 81157486 81157662 + 2 NA Intergenic L1M2a|LINE|L1 163706 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 245-101 chr12 83217165 83217358 + 2 NA Intergenic Intergenic 530106 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 212-283 chr6 73316137 73316305 + 2 NA Intergenic MER3|DNA|hAT-Charlie -5856 NR_027005 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 380-278 chr4 65975939 65976206 + 2 NA Intergenic Intergenic -300752 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 247-402 chr8 75069448 75069666 + 2 NA Intergenic L2a|LINE|L2 69402 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 370-360 chr4 177398792 177399126 + 2 NA Intergenic Intergenic 43478 NM_000027 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 174-119 chr6 9786231 9786354 + 2 NA Intergenic Intergenic -618210 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 416-104 chr13 54943229 54943608 + 2 NA Intergenic Intergenic -231036 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 675-58 chr3 73364537 73365013 + 2 NA Intergenic MLT2B4|LTR|ERVL 69220 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 145-47 chr2 31268285 31268377 + 2 NA 3' UTR (NM_014600, exon 6 of 6) 3' UTR (NM_014600, exon 6 of 6) 34179 NM_014600 30845 Hs.368808 NM_014600 ENSG00000013016 EHD3 PAST3 EH domain containing 3 protein-coding 431-137 chr2 107036199 107036602 + 2 NA Intergenic L1PA14|LINE|L1 -149291 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 272-469 chr9 26032359 26032544 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -34224 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 473-102 chr16 8237744 8238162 + 2 NA Intergenic AluSx1|SINE|Alu 351885 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 567-49 chr13 112630441 112630842 + 2 NA Intergenic AluSx1|SINE|Alu -16403 NM_207440 400165 Hs.591213 NM_207440 ATP11AUN C13orf35|SMABLO1 ATP11A upstream neighbor protein-coding 202-105 chr2 966971 967168 + 2 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -15677 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 320-161 chr14 89523201 89523487 + 2 NA intron (NM_001085471, intron 1 of 6) L1ME1|LINE|L1 -52872 NR_024620 29018 Hs.673124 NM_014099 ENSG00000259073 FOXN3-AS2 PRO1768 FOXN3 antisense RNA 2 ncRNA 401-173 chr2 160367751 160367986 + 2 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 40014 NR_039946 100616364 NR_039946 ENSG00000283734 MIR4785 mir-4785 microRNA 4785 ncRNA 218-252 chr4 132961159 132961293 + 2 NA Intergenic Intergenic 187890 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 248 chr1 10905690 10905905 + 2 NA Intergenic Intergenic 60890 NM_001366227 148345 Hs.127026 NM_173507 ENSG00000175262 C1orf127 - chromosome 1 open reading frame 127 protein-coding 356-14 chr1 87388122 87388318 + 2 NA Intergenic Intergenic -16565 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 371-175 chr2 102178337 102178659 + 2 NA 3' UTR (NM_001320984, exon 10 of 10) 3' UTR (NM_001320984, exon 10 of 10) -8475 NM_001351447 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 443-208 chr3 108319729 108320121 + 2 NA intron (NM_001282557, intron 1 of 9) intron (NM_001282557, intron 1 of 9) 8140 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 479-216 chr6 98438445 98438880 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 393038 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 302-186 chr18 69687769 69687966 + 2 NA intron (NM_152721, intron 4 of 7) L1ME2|LINE|L1 217936 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 254-6 chr1 57805079 57805279 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -55402 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 343-121 chr13 36425171 36425491 + 2 NA Intergenic L1MA2|LINE|L1 -6499 NM_001111046 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 291-156 chr16 5517586 5517830 + 2 NA Intergenic Intergenic 98542 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 321-603 chr9 102445684 102445916 + 2 NA Intergenic Intergenic -73837 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 270-266 chr4 70296277 70296522 + 2 NA Intergenic L1M3b|LINE|L1 -38582 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 273-44 chr10 32603526 32603766 + 2 NA intron (NM_001321115, intron 19 of 43) L1MA4A|LINE|L1 157506 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 230-294 chr5 42341752 42341940 + 2 NA Intergenic L1MA4A|LINE|L1 -81593 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 330-246 chr19 58280892 58281092 + 2 NA intron (NR_144447, intron 1 of 6) MLT1D|LTR|ERVL-MaLR 2026 NR_144447 108903150 Hs.715293 NR_144447 ENSG00000267216 ZNF8-ERVK3-1 - ZNF8-ERVK3-1 readthrough ncRNA 672-121 chrX 28009331 28009893 + 2 NA Intergenic Intergenic -28163 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 317-312 chr3 110640354 110640622 + 2 NA Intergenic Intergenic 429471 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 371-353 chr7 12016020 12016378 + 2 NA Intergenic Intergenic -184001 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 261-299 chr5 6516276 6516485 + 2 NA Intergenic MER101-int|LTR|ERV1 -65756 NR_024423 255167 Hs.435515 NR_024423 ENSG00000250056 LINC01018 SRHC long intergenic non-protein coding RNA 1018 ncRNA 278-461 chrX 39046766 39047025 + 2 NA Intergenic L2c|LINE|L2 -243012 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 279-381 chr7 4580972 4581119 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -101250 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 416-258 chr4 137849713 137850057 + 2 NA Intergenic L1MCc|LINE|L1 -239129 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 774-90 chr8 135141799 135142206 + 2 NA Intergenic (AAGC)n|Simple_repeat|Simple_repeat -92129 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 294-276 chr22 34514577 34514791 + 2 NA Intergenic Intergenic 483232 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 1180-11 chr8 112880684 112881452 + 2 NA intron (NM_001363185, intron 8 of 66) L2c|LINE|L2 237575 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 234-402 chr9 81565492 81565697 + 2 NA Intergenic Intergenic 123941 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 472-351 chrX 42764126 42764430 + 2 NA Intergenic HERVFH19-int|LTR|ERV1 13885 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 158-129 chrX 85329478 85329584 + 2 NA intron (NM_001307940, intron 7 of 15) L2a|LINE|L2 50134 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 436-237 chr5 35065827 35066259 + 2 NA exon (NM_000949, exon 10 of 10) exon (NM_000949, exon 10 of 10) -18094 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 332-201 chr17 68848801 68849023 + 2 NA Intergenic Intergenic 106480 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 336-327 chr20 45734896 45735110 + 2 NA Intergenic L1MA7|LINE|L1 12656 NM_178455 391253 Hs.677891 NM_178455 ENSG00000149651 SPINT4 C20orf137|SPINT3|dJ601O1.1 serine peptidase inhibitor, Kunitz type 4 protein-coding 314-401 chr3 188263530 188263830 + 2 NA intron (NM_005578, intron 2 of 10) MIR|SINE|MIR 38275 NM_001167671 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 418-111 chr2 51119295 51119549 + 2 NA intron (NR_135237, intron 2 of 10) L2b|LINE|L2 86821 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 357-357 chr5 121158288 121158560 + 2 NA Intergenic Intergenic -164126 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 174-63 chr2 65247837 65247990 + 2 NA intron (NM_001005386, intron 4 of 9) L2b|LINE|L2 20218 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 384 chr1 23006154 23006451 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 9550 NM_001242521 729059 Hs.236896 NM_001242521 ENSG00000227868 TEX46 C1orf234|TEX# testis expressed 46 protein-coding 515-8 chr1 96928960 96929310 + 2 NA Intergenic Intergenic -166788 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 671-36 chr16 49158479 49158997 + 2 NA Intergenic Intergenic 123100 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 253-141 chr15 69454916 69455121 + 2 NA intron (NM_001003, intron 2 of 3) intron (NM_001003, intron 2 of 3) 2200 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 290-233 chr2 215527713 215527912 + 2 NA Intergenic Intergenic 74105 NR_110607 102724849 Hs.116161 NR_110607 ENSG00000225166 LOC102724849 - uncharacterized LOC102724849 ncRNA 403-32 chr10 66503886 66504272 + 2 NA intron (NM_001127384, intron 11 of 17) L1MA8|LINE|L1 -421957 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 424-37 chr11 21588125 21588495 + 2 NA Intergenic (CATT)n|Simple_repeat|Simple_repeat -604775 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 333-185 chr17 33974276 33974529 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 182404 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 194-207 chr8 46777935 46778081 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -62878 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 278-66 chr12 15458499 15458752 + 2 NA intron (NM_030667, intron 1 of 26) L1MB1|LINE|L1 -87986 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 412-259 chr5 74513419 74513745 + 2 NA intron (NR_126354, intron 1 of 2) intron (NR_126354, intron 1 of 2) 23394 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 286-51 chr10 105228814 105229010 + 2 NA intron (NM_014978, intron 20 of 26) L1MC1|LINE|L1 -562696 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 449-38 chr11 15515400 15515739 + 2 NA Intergenic L1ME2|LINE|L1 -128316 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 350-490 chr7 96254767 96255023 + 2 NA intron (NM_001160210, intron 3 of 17) L1MC5a|LINE|L1 -35139 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 391-234 chr3 82330300 82330536 + 2 NA intron (NR_147146, intron 3 of 8) Tigger3a|DNA|TcMar-Tigger 344276 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 281-48 chr10 88476082 88476285 + 2 NA intron (NM_018363, intron 4 of 6) MER103C|DNA|hAT-Charlie 107135 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 377-31 chr1 238026694 238027031 + 2 NA Intergenic L1ME2|LINE|L1 -135940 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 697-33 chr15 92332285 92332818 + 2 NA Intergenic L1ME5|LINE|L1 -61330 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 317-35 chr1 234728512 234728735 + 2 NA non-coding (NR_038856, exon 3 of 3) non-coding (NR_038856, exon 3 of 3) 4581 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 336-378 chr3 134103703 134103990 + 2 NA Intergenic L1MEc|LINE|L1 -46198 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 329-148 chr14 20043541 20043793 + 2 NA Intergenic Intergenic -8909 NM_001004714 390433 Hs.553573 NM_001004714 ENSG00000176253 OR4K13 OR14-27 olfactory receptor family 4 subfamily K member 13 protein-coding 204-30 chr10 111769260 111769396 + 2 NA Intergenic Intergenic 414437 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 273-328 chr4 74026428 74026693 + 2 NA Intergenic L1MA10|LINE|L1 12129 NM_002090 2921 Hs.89690 NM_002090 ENSG00000163734 CXCL3 CINC-2b|GRO3|GROg|MIP-2b|MIP2B|SCYB3 C-X-C motif chemokine ligand 3 protein-coding 553-24 chr10 111718753 111719128 + 2 NA Intergenic L1PA15|LINE|L1 464825 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 356-299 chr21 31721355 31721667 + 2 NA intron (NM_020706, intron 1 of 19) intron (NM_020706, intron 1 of 19) 10607 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 773-53 chr9 31766606 31767187 + 2 NA Intergenic Intergenic -385406 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 291-402 chr7 40140752 40140994 + 2 NA intron (NM_024728, intron 1 of 14) L1P4|LINE|L1 5897 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 305-32 chr1 158452751 158452941 + 2 NA Intergenic L1PB|LINE|L1 -12716 NM_001004473 391109 Hs.690410 NM_001004473 ENSG00000173285 OR10K1 OR1-6 olfactory receptor family 10 subfamily K member 1 protein-coding 349-449 chr6 70299818 70300044 + 2 NA intron (NM_001851, intron 4 of 37) intron (NM_001851, intron 4 of 37) 3153 NM_001851 1297 Hs.590892 NM_001851 ENSG00000112280 COL9A1 DJ149L1.1.2|EDM6|MED|STL4 collagen type IX alpha 1 chain protein-coding 378-401 chr7 46090365 46090739 + 2 NA Intergenic L1PA15|LINE|L1 -169280 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 411-76 chr12 125839976 125840275 + 2 NA Intergenic Intergenic 143249 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 269-117 chr14 56322290 56322461 + 2 NA Intergenic Intergenic -191956 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 1083-7 chr17 3357060 3357752 + 2 NA Intergenic L1MEg|LINE|L1 41004 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 254-425 chr8 123564370 123564557 + 2 NA Intergenic MIR3|SINE|MIR -23257 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 258-2 chr1 29077876 29078055 + 2 NA intron (NM_001166007, intron 13 of 17) AluSz|SINE|Alu 44536 NM_001171868 399474 Hs.712722 NM_001003682 ENSG00000253304 TMEM200B TTMB transmembrane protein 200B protein-coding 354-103 chr12 40963262 40963499 + 2 NA intron (NM_001843, intron 15 of 23) intron (NM_001843, intron 15 of 23) 55023 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 296-41 chr10 34078557 34078714 + 2 NA Intergenic Intergenic -305955 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 220-82 chr12 24956706 24956878 + 2 NA Intergenic Intergenic -7691 NM_005504 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 374-393 chr8 114660046 114660367 + 2 NA Intergenic L2a|LINE|L2 1007807 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 349-224 chr19 24346080 24346347 + 2 NA Intergenic ALR/Alpha|Satellite|centr -182766 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 323-303 chr21 22990460 22990706 + 2 NA Intergenic UCON55|DNA|TcMar-Tigger -88701 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 593-87 chr20 8201883 8202375 + 2 NA intron (NM_182734, intron 2 of 32) AluSz6|SINE|Alu -46575 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 394-244 chr4 94787359 94787709 + 2 NA intron (NM_001203, intron 1 of 12) MER39|LTR|ERV1 29579 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 328-514 chr6 148258624 148258946 + 2 NA Intergenic Intergenic -13543 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 205-183 chr3 87305814 87305936 + 2 NA Intergenic Intergenic -29291 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 479-168 chr4 86648253 86648558 + 2 NA intron (NM_080685, intron 2 of 47) L1MA4|LINE|L1 54090 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 385-302 chr5 81700574 81700791 + 2 NA intron (NM_012446, intron 1 of 16) Tigger1|DNA|TcMar-Tigger 50571 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 351-86 chr12 13890737 13890957 + 2 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 89509 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 390-227 chr3 5599277 5599561 + 2 NA Intergenic Intergenic -349164 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 329-350 chr3 10905407 10905619 + 2 NA intron (NM_014229, intron 6 of 13) MLT1J1|LTR|ERVL-MaLR -87221 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 270-44 chr10 89235244 89235417 + 2 NA intron (NM_001288979, intron 1 of 7) intron (NM_001288979, intron 1 of 7) 16445 NM_001127605 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 182-63 chr15 69467609 69467740 + 2 NA Intergenic MIR3|SINE|MIR 14856 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 301-134 chr15 70494169 70494434 + 2 NA Intergenic MIR|SINE|MIR 11627 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 580-91 chr2 178063743 178064237 + 2 NA intron (NM_001077197, intron 2 of 20) MIRc|SINE|MIR 8787 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 246-345 chr6 23627163 23627360 + 2 NA Intergenic Intergenic -498954 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 312-536 chr8 136509328 136509585 + 2 NA Intergenic L1ME1|LINE|L1 -21342 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 353-543 chr8 137309345 137309547 + 2 NA Intergenic L1MCb|LINE|L1 104142 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 254-136 chr16 6469216 6469402 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -304500 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 322-443 chr5 148513562 148513728 + 2 NA intron (NM_001040172, intron 4 of 5) L1ME3|LINE|L1 123416 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 326-447 chr6 45396137 45396394 + 2 NA intron (NM_001015051, intron 2 of 7) L1MB8|LINE|L1 -18331 NM_001350324 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 256-252 chr3 22578403 22578612 + 2 NA Intergenic Intergenic 621368 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 375-119 chr14 20727271 20727560 + 2 NA Intergenic MER21C|LTR|ERVL -18472 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 327-117 chr12 65085477 65085751 + 2 NA intron (NM_007191, intron 2 of 9) intron (NM_007191, intron 2 of 9) 35691 NM_007191 11197 Hs.284122 NM_007191 ENSG00000156076 WIF1 WIF-1 WNT inhibitory factor 1 protein-coding 464-151 chr21 18368082 18368465 + 2 NA intron (NM_002772, intron 6 of 24) intron (NM_002772, intron 6 of 24) 35512 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 473-15 chr1 159726501 159726916 + 2 NA Intergenic Intergenic -12119 NM_000567 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 606-132 chr5 72069087 72069492 + 2 NA Intergenic L1MB8|LINE|L1 -38186 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 218-91 chr14 45371429 45371591 + 2 NA Intergenic Intergenic -118308 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 281-139 chr15 99621941 99622151 + 2 NA intron (NM_001352615, intron 4 of 12) intron (NM_001352615, intron 4 of 12) -10932 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 516-182 chr3 166651164 166651450 + 2 NA Intergenic Intergenic -247376 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 461-279 chr8 131353677 131354002 + 2 NA Intergenic Intergenic -312930 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 291-344 chr5 43022570 43022794 + 2 NA intron (NR_104651, intron 2 of 2) MER4-int|LTR|ERV1 -3039 NR_104650 648987 Hs.649468 NR_034085 ENSG00000177738 LOC648987 - uncharacterized LOC648987 ncRNA 132-60 chr5 20239885 20239985 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -65616 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 347-300 chr3 55641646 55641915 + 2 NA intron (NR_132749, intron 16 of 17) intron (NR_132749, intron 16 of 17) 17689 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 208-92 chr17 69225087 69225206 + 2 NA intron (NM_080282, intron 4 of 39) intron (NM_080282, intron 4 of 39) 9866 NR_130736 100133319 NR_130736 ENSG00000278873 PRO1804 - uncharacterized LOC100133319 ncRNA 731-64 chr7 3014539 3015096 + 2 NA intron (NM_001324281, intron 1 of 25) intron (NM_001324281, intron 1 of 25) 29050 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 484-218 chr5 100735468 100735791 + 2 NA Intergenic Intergenic 80936 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 187-171 chr8 59881571 59881728 + 2 NA Intergenic L1MC3|LINE|L1 399751 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 223-101 chr15 65001312 65001478 + 2 NA TTS (NM_139242) TTS (NM_139242) -11481 NM_001127890 51324 Hs.242458 NM_016630 ENSG00000090487 SPG21 ABHD21|ACP33|BM-019|GL010|MAST SPG21 abhydrolase domain containing, maspardin protein-coding 188-209 chr8 136462251 136462405 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -68470 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 572-128 chr4 97556416 97556858 + 2 NA Intergenic Intergenic 189711 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 341-563 chr9 73944494 73944681 + 2 NA Intergenic L1MEd|LINE|L1 -426944 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 594-90 chr3 7093785 7094313 + 2 NA intron (NM_000844, intron 1 of 9) L2a|LINE|L2 -200032 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 195-60 chr14 33737513 33737661 + 2 NA intron (NM_001165893, intron 6 of 10) intron (NM_001165893, intron 6 of 10) 28650 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 140-80 chr8 138179278 138179364 + 2 NA intron (NM_015912, intron 9 of 19) intron (NM_015912, intron 9 of 19) -95776 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 542-30 chr10 107754712 107755160 + 2 NA Intergenic L3|LINE|CR1 314357 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 440-86 chr16 62853186 62853443 + 2 NA Intergenic Intergenic -816876 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 427-199 chr5 14028687 14028950 + 2 NA Intergenic AluJb|SINE|Alu -84338 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 661-39 chr19 27608869 27609497 + 2 NA Intergenic ALR/Alpha|Satellite|centr -184248 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 342-149 chr14 77942970 77943185 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 142968 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 357-19 chr1 196115621 196115862 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -27026 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 329-272 chr2 52569747 52569931 + 2 NA Intergenic L1PA15|LINE|L1 132776 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 362-244 chr2 231025735 231025931 + 2 NA Intergenic AluSc|SINE|Alu -11690 NM_001144994 257407 Hs.526596 NM_001144994 ENSG00000204128 C2orf72 - chromosome 2 open reading frame 72 protein-coding 542-210 chr7 140967639 140968025 + 2 NA Intergenic L2a|LINE|L2 -42903 NM_001354609 673 Hs.324250 NM_004333 ENSG00000157764 BRAF B-RAF1|B-raf|BRAF1|NS7|RAFB1 B-Raf proto-oncogene, serine/threonine kinase protein-coding 301-148 chr16 68216300 68216574 + 2 NA intron (NM_004555, intron 10 of 10) intron (NM_004555, intron 10 of 10) 17062 NR_106831 102466194 NR_106831 ENSG00000284259 MIR6773 hsa-mir-6773 microRNA 6773 ncRNA 276-2 chr1 12750838 12751038 + 2 NA intron (NM_001330361, intron 1 of 2) L1MB3|LINE|L1 4738 NM_001330361 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 312-334 chr3 88459716 88460021 + 2 NA intron (NM_001368168, intron 2 of 2) L1M4|LINE|L1 121412 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 325-553 chr8 130250696 130250873 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 45749 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 152-6 chr1 162717640 162717722 + 2 NA intron (NM_001014796, intron 3 of 18) L1MC3|LINE|L1 -73021 NM_016371 51478 Hs.492925 NM_016371 ENSG00000132196 HSD17B7 PRAP|SDR37C1 hydroxysteroid 17-beta dehydrogenase 7 protein-coding 370-89 chr11 79308970 79309215 + 2 NA intron (NM_001098816, intron 1 of 33) MER102c|DNA|hAT-Charlie 93017 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 283-481 chrX 108005849 108006045 + 2 NA Intergenic L1PA16|LINE|L1 -23577 NM_031273 56156 Hs.333130 NM_031273 ENSG00000170925 TEX13B TGC3B|TSGA5 testis expressed 13B protein-coding 208-217 chr5 133690954 133691147 + 2 NA Intergenic Intergenic -78509 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 226-243 chr3 192705872 192706028 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 21591 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 343-265 chr2 120652191 120652503 + 2 NA Intergenic L1MEg|LINE|L1 -83521 NM_001371271 471-271 chr8 120224236 120224567 + 2 NA intron (NM_021110, intron 14 of 47) intron (NM_021110, intron 14 of 47) 99299 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 233-235 chr3 76579188 76579377 + 2 NA Intergenic Intergenic -460817 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 265-272 chr4 71853160 71853359 + 2 NA Intergenic L1MA9|LINE|L1 -47739 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 562-213 chr8 71092646 71093099 + 2 NA Intergenic Intergenic 263834 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 285-283 chr3 135955245 135955453 + 2 NA Intergenic L1MA3|LINE|L1 -10379 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 137-12 chr11 92534835 92534943 + 2 NA intron (NM_001008781, intron 2 of 24) MER39|LTR|ERV1 182793 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 217-239 chr3 165936750 165936923 + 2 NA Intergenic Intergenic -99413 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 263-406 chr7 144789221 144789417 + 2 NA intron (NM_001350887, intron 1 of 6) L2a|LINE|L2 46621 NM_001350879 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 350-404 chr5 99986361 99986666 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 401741 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 392-155 chr2 134889702 134890079 + 2 NA intron (NR_036549, intron 1 of 4) L1MC4|LINE|L1 28716 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 342-341 chr3 178692780 178692970 + 2 NA intron (NM_001278911, intron 1 of 4) L1PA13|LINE|L1 134025 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 353-307 chr22 49335849 49336121 + 2 NA Intergenic L1ME2|LINE|L1 207481 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 316-364 chr3 136344019 136344273 + 2 NA intron (NM_005862, intron 29 of 33) MIR|SINE|MIR 93806 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 364-461 chr8 134872334 134872528 + 2 NA intron (NR_125427, intron 1 of 2) LTR50|LTR|ERVL 22496 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 417-219 chr5 57917401 57917811 + 2 NA Intergenic AluJr|SINE|Alu -18444 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 511-141 chr20 6201805 6202281 + 2 NA Intergenic Intergenic -78499 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 275-379 chr9 26649552 26649817 + 2 NA Intergenic Intergenic 243118 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 190-158 chr6 140431534 140431671 + 2 NA Intergenic L1MCa|LINE|L1 226350 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 120-52 chr8 125869577 125869665 + 2 NA Intergenic Intergenic 81576 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 530-102 chr17 61945245 61945614 + 2 NA 3' UTR (NM_005121, exon 30 of 30) 3' UTR (NM_005121, exon 30 of 30) -17447 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 280-258 chr3 72225194 72225444 + 2 NA Intergenic L1M4b|LINE|L1 74062 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 380-229 chr21 44618735 44618991 + 2 NA intron (NM_144991, intron 1 of 11) L1M4|LINE|L1 6784 NM_198695 386681 Hs.528021 NM_198695 ENSG00000187766 KRTAP10-8 KAP10.8|KRTAP18-8|KRTAP18.8 keratin associated protein 10-8 protein-coding 453-298 chr9 30199157 30199486 + 2 NA Intergenic HERVL18-int|LTR|ERVL 209133 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 561-201 chr8 92622813 92623177 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 32499 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 280-326 chr5 96496519 96496728 + 2 NA intron (NR_130776, intron 4 of 4) intron (NR_130776, intron 4 of 4) -63375 NM_000439 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 330-398 chr4 177026936 177027235 + 2 NA Intergenic Intergenic 151383 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 354-416 chr6 165005759 165006051 + 2 NA Intergenic L1MCc|LINE|L1 -183842 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 317-442 chr7 19613789 19614072 + 2 NA Intergenic Intergenic 91506 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 548-164 chr4 75040504 75040931 + 2 NA intron (NM_015393, intron 3 of 3) L1MD3|LINE|L1 43991 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 345-266 chr2 84162808 84162980 + 2 NA Intergenic Intergenic -127788 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 309-22 chr1 185900797 185901082 + 2 NA intron (NM_031935, intron 4 of 106) MamRep605|LTR?|LTR? 166548 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 415-104 chr18 6817650 6817947 + 2 NA intron (NM_001366230, intron 1 of 17) MLT1J|LTR|ERVL-MaLR -16687 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 521-120 chr2 54645260 54645594 + 2 NA exon (NM_003128, exon 21 of 36) exon (NM_003128, exon 21 of 36) -79585 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 245-127 chr14 69617019 69617245 + 2 NA intron (NM_014734, intron 1 of 5) L1MB7|LINE|L1 5536 NM_014734 9766 Hs.440025 NM_014734 ENSG00000100647 SUSD6 DRAGO|KIAA0247 sushi domain containing 6 protein-coding 298-154 chr16 63033238 63033528 + 2 NA Intergenic MER72|LTR|ERV1 -996945 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 370-469 chr9 25814634 25814836 + 2 NA Intergenic Intergenic 34679 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 514-92 chr14 82308608 82308942 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -333857 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 477-229 chr4 129953396 129953734 + 2 NA intron (NR_151713, intron 15 of 16) intron (NR_151713, intron 15 of 16) 181946 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 306-372 chr4 164058170 164058363 + 2 NA intron (NM_001166373, intron 2 of 7) L1PA7|LINE|L1 139445 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 270-134 chr16 4058914 4059082 + 2 NA intron (NM_001116, intron 2 of 10) L1ME4a|LINE|L1 57444 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 228-380 chrX 8276134 8276284 + 2 NA Intergenic Intergenic -104942 NM_016378 51480 Hs.279737 NM_016378 ENSG00000177504 VCX2 VCX-2r|VCX2R|VCXB variable charge X-linked 2 protein-coding 206-20 chr1 192436291 192436473 + 2 NA Intergenic Intergenic 119390 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 275-213 chr2 190736247 190736432 + 2 NA Intergenic L1MD|LINE|L1 77181 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 310-342 chr3 127497469 127497658 + 2 NA TTS (NR_125397) TTS (NR_125397) 40217 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 291-83 chr11 112612036 112612249 + 2 NA Intergenic Intergenic -56340 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 442-222 chr4 156202791 156203180 + 2 NA Intergenic L2c|LINE|L2 -249119 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 153-30 chr14 32536636 32536781 + 2 NA intron (NM_004274, intron 3 of 13) intron (NM_004274, intron 3 of 13) 207410 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 403-308 chr8 87445774 87446044 + 2 NA Intergenic Intergenic 428106 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 203-49 chr12 132934810 132934911 + 2 NA intron (NM_001164715, intron 2 of 4) intron (NM_001164715, intron 2 of 4) 21446 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 377-91 chr12 44986020 44986293 + 2 NA Intergenic Intergenic 64943 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 422-301 chr8 108605804 108606093 + 2 NA TTS (NR_136411) TTS (NR_136411) 162324 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 432-223 chr5 81996616 81996945 + 2 NA intron (NM_031482, intron 2 of 7) MIR|SINE|MIR 24757 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 576-78 chr2 13558187 13558625 + 2 NA Intergenic MER77B|LTR|ERVL -551393 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 294-198 chr2 23050280 23050519 + 2 NA Intergenic Intergenic -334780 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 472-34 chr10 55817688 55817998 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -189901 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 249-455 chr9 118716025 118716221 + 2 NA intron (NR_151725, intron 2 of 3) intron (NR_151725, intron 2 of 3) 36452 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 390-209 chr20 19535653 19535974 + 2 NA intron (NM_020689, intron 3 of 16) MSTD|LTR|ERVL-MaLR -251217 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 174-130 chr6 101033027 101033174 + 2 NA Intergenic Intergenic -151728 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 452-170 chr3 90264308 90264595 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1156830 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 580-60 chr16 62632235 62632752 + 2 NA Intergenic L1MC2|LINE|L1 -596055 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 370-81 chr11 31265678 31265892 + 2 NA intron (NM_181807, intron 7 of 8) L1ME4a|LINE|L1 103954 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 282-130 chr14 68071229 68071431 + 2 NA intron (NM_133509, intron 7 of 10) L1PA15|LINE|L1 247738 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 181-44 chr14 87334783 87334936 + 2 NA Intergenic L2a|LINE|L2 320435 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 313-394 chr4 91675736 91676010 + 2 NA Intergenic LTR16D|LTR|ERVL 601429 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 242-113 chr14 102935970 102936153 + 2 NA intron (NM_006035, intron 36 of 36) L1MB5|LINE|L1 13405 NM_030943 81693 Hs.534494 NM_030943 ENSG00000166126 AMN PRO1028|amnionless amnion associated transmembrane protein protein-coding 398-37 chr10 56647788 56648083 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -286662 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 225-177 chr20 21045804 21045976 + 2 NA Intergenic Intergenic 60468 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 255-299 chr4 89139454 89139697 + 2 NA Intergenic AluJb|SINE|Alu 26758 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 205-168 chr21 24949840 24949981 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 109360 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 687-64 chr2 116312486 116312874 + 2 NA Intergenic MIR|SINE|MIR 968865 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 521-193 chr5 58654994 58655324 + 2 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 72084 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 348-129 chr14 20028651 20028953 + 2 NA Intergenic Intergenic 5956 NM_001004714 390433 Hs.553573 NM_001004714 ENSG00000176253 OR4K13 OR14-27 olfactory receptor family 4 subfamily K member 13 protein-coding 299-113 chr12 119612813 119613083 + 2 NA intron (NM_001136534, intron 1 of 2) intron (NM_001136534, intron 1 of 2) 19174 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 431-216 chr5 3588735 3589034 + 2 NA Intergenic Intergenic -6948 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 428-328 chrX 39377659 39378048 + 2 NA intron (NR_110385, intron 2 of 5) intron (NR_110385, intron 2 of 5) 13921 NR_110385 101927449 Hs.553988 NR_110385 ENSG00000236747 LINC01282 - long intergenic non-protein coding RNA 1282 ncRNA 222-198 chr2 192118083 192118284 + 2 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 76750 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 805-48 chr8 131679197 131679680 + 2 NA Intergenic Intergenic -224655 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 348-261 chr20 17717896 17718193 + 2 NA intron (NM_001014977, intron 1 of 2) Kanga2_a|DNA|TcMar-Tc2 18096 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 462-167 chr22 47980443 47980849 + 2 NA Intergenic AluSp|SINE|Alu -293718 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 340-117 chr12 119151375 119151553 + 2 NA intron (NM_194286, intron 10 of 12) MIRb|SINE|MIR 25020 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 280-139 chr15 76581250 76581406 + 2 NA intron (NR_148227, intron 22 of 32) L1MA3|LINE|L1 -5319 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 245-143 chr15 71585513 71585703 + 2 NA intron (NM_001286429, intron 1 of 11) L1MA9|LINE|L1 38372 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 446-18 chr1 171888570 171889009 + 2 NA intron (NM_001278252, intron 1 of 14) L3|LINE|CR1 24597 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 326-299 chr20 52349637 52349855 + 2 NA Intergenic Intergenic -157761 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 754-66 chr5 35631675 35632250 + 2 NA intron (NM_144722, intron 2 of 9) THE1C-int|LTR|ERVL-MaLR 14099 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 534-259 chr8 97283679 97284175 + 2 NA intron (NR_125390, intron 2 of 2) intron (NR_125390, intron 2 of 2) -5999 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 336-587 chr9 108659401 108659662 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 196455 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 224-187 chr22 47638179 47638342 + 2 NA intron (NR_122046, intron 2 of 8) L1M8|LINE|L1 6586 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 279-122 chr15 96203345 96203548 + 2 NA intron (NR_125738, intron 2 of 4) MIRb|SINE|MIR -75605 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 348-572 chrX 95868838 95869064 + 2 NA Intergenic L1PA8A|LINE|L1 468951 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 279-421 chr8 117542869 117543086 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 22264 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 219-85 chr13 56687210 56687380 + 2 NA Intergenic Intergenic -453623 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 632-93 chr5 34635246 34635810 + 2 NA Intergenic L1PA7|LINE|L1 -20800 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 406-265 chr6 164477684 164478045 + 2 NA Intergenic MER57A-int|LTR|ERV1 344199 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 357-361 chr5 131489220 131489490 + 2 NA intron (NM_016340, intron 15 of 27) intron (NM_016340, intron 15 of 27) 145874 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 564-217 chrX 145524819 145525369 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR 277591 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 303-324 chr4 89287772 89287961 + 2 NA intron (NM_198281, intron 1 of 1) intron (NM_198281, intron 1 of 1) 19934 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 217-294 chr5 58546920 58547057 + 2 NA intron (NR_109904, intron 2 of 3) intron (NR_109904, intron 2 of 3) 11255 NR_109904 101928600 Hs.694699 NR_109904 ENSG00000250127 LINC02108 - long intergenic non-protein coding RNA 2108 ncRNA 215-215 chr4 31867378 31867559 + 2 NA Intergenic Intergenic -129911 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 454-322 chr8 127266083 127266363 + 2 NA intron (NR_117099, intron 1 of 3) MIRb|SINE|MIR 21586 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 276-386 chr5 155880860 155881087 + 2 NA Intergenic Intergenic -445784 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 314-119 chr12 23728693 23728947 + 2 NA intron (NM_152989, intron 9 of 17) MIR3|SINE|MIR -144234 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 464-126 chr2 108259694 108260103 + 2 NA intron (NM_001320878, intron 7 of 7) intron (NM_001320878, intron 7 of 7) 19930 NM_001008743 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 240-314 chr4 43264007 43264168 + 2 NA Intergenic L1MA3|LINE|L1 228456 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 224-46 chr11 54945037 54945211 + 2 NA Intergenic ALR/Alpha|Satellite|centr 238292 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 313-336 chr3 46337107 46337365 + 2 NA Intergenic L1MB7|LINE|L1 -16508 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 298-139 chr15 38782073 38782298 + 2 NA Intergenic Intergenic 85587 NR_160786 324-236 chr19 22841547 22841742 + 2 NA intron (NM_001349726, intron 1 of 3) LTR70|LTR|ERV1 9353 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 376-75 chr11 98219895 98220256 + 2 NA Intergenic Intergenic -800874 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 202-80 chr14 98211062 98211199 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -233006 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 450-82 chr14 58218300 58218746 + 2 NA intron (NM_018477, intron 7 of 12) Charlie7|DNA|hAT-Charlie 18374 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 441-74 chr14 46224413 46224767 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 160431 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 527-84 chr14 54769278 54769712 + 2 NA intron (NM_015589, intron 7 of 11) intron (NM_015589, intron 7 of 11) 14662 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 148-29 chr14 87535053 87535159 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie 120188 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 313-164 chr15 34833333 34833566 + 2 NA Intergenic Intergenic -37900 NM_005159 70 Hs.118127 NM_005159 ENSG00000159251 ACTC1 ACTC|ASD5|CMD1R|CMH11|LVNC4 actin alpha cardiac muscle 1 protein-coding 244-206 chr21 29228168 29228401 + 2 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 34790 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 326-515 chr8 29713235 29713546 + 2 NA Intergenic L1MD|LINE|L1 34719 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 521-245 chr7 111797707 111798047 + 2 NA intron (NM_001363540, intron 30 of 52) HUERS-P3-int|LTR|ERV1 -10628 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 225-196 chr3 22287805 22287957 + 2 NA Intergenic L1M3de|LINE|L1 330742 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 377-158 chr17 54366216 54366566 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -534300 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 290-75 chr11 54877890 54878085 + 2 NA Intergenic ALR/Alpha|Satellite|centr 171155 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 564-208 chr8 140970899 140971306 + 2 NA intron (NM_001352719, intron 1 of 32) Cheshire|DNA|hAT-Charlie 29902 NM_001352710 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 343-400 chr4 106012994 106013190 + 2 NA intron (NR_125928, intron 3 of 3) L1MEc|LINE|L1 9386 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 174-156 chr9 90452031 90452167 + 2 NA Intergenic MLT2B4|LTR|ERVL -18610 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 436-27 chr10 29399255 29399532 + 2 NA Intergenic HERV16-int|LTR|ERVL -10141 NR_110927 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 503-21 chr1 241190298 241190631 + 2 NA intron (NM_001282778, intron 2 of 16) L1MDa|LINE|L1 58192 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 316-133 chr12 45004585 45004855 + 2 NA Intergenic L2b|LINE|L2 46379 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 262-238 chr2 223987721 223987911 + 2 NA intron (NM_001136530, intron 4 of 8) intron (NM_001136530, intron 4 of 8) 30353 NM_022915 65080 Hs.203559 NM_022915 ENSG00000135900 MRPL44 COXPD16|L44MT|MRP-L44 mitochondrial ribosomal protein L44 protein-coding 509-104 chr19 27873716 27874054 + 2 NA intron (NR_146734, intron 1 of 7) intron (NR_146734, intron 1 of 7) -79945 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 333-612 chr9 118955064 118955273 + 2 NA Intergenic Intergenic 275497 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 385-263 chr4 30549030 30549375 + 2 NA Intergenic Intergenic -171167 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 311-97 chr12 25708300 25708502 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -59823 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 191-16 chr1 190827969 190828094 + 2 NA Intergenic L1MA5|LINE|L1 203141 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 289-4 chr1 38616280 38616460 + 2 NA Intergenic Intergenic 141174 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 315-132 chr14 58857413 58857622 + 2 NA intron (NR_110547, intron 1 of 5) L1MA4A|LINE|L1 29229 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 259-334 chr6 2355968 2356157 + 2 NA intron (NR_046229, intron 4 of 6) intron (NR_046229, intron 4 of 6) 110309 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 149-87 chr5 123210510 123210584 + 2 NA Intergenic Intergenic -120231 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 286-208 chr2 76182569 76182739 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie -471739 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 258-12 chr1 105497533 105497733 + 2 NA Intergenic MLT2E|LTR|ERVL 121302 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 185-140 chr3 120024996 120025177 + 2 NA intron (NM_002093, intron 1 of 11) AluSz6|SINE|Alu 59562 NR_162125 113839522 NR_162125 MIR6529 - microRNA 6529 ncRNA 210-17 chr1 175733847 175734004 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 9670 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 353-15 chr1 75589894 75590165 + 2 NA intron (NM_152697, intron 1 of 23) L1MA1|LINE|L1 21085 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 156-39 chr15 98351349 98351476 + 2 NA intron (NR_146567, intron 1 of 2) intron (NR_146567, intron 1 of 2) -19854 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 290-402 chr7 700453 700695 + 2 NA intron (NM_001164760, intron 2 of 10) L1MEf|LINE|L1 11950 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 244-229 chr3 68138848 68138996 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 134675 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 436-188 chr3 103150012 103150412 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 373904 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 283-96 chr12 27762494 27762764 + 2 NA 3' UTR (NM_001146221, exon 3 of 3) 3' UTR (NM_001146221, exon 3 of 3) 8953 NM_001146221 100287284 NM_001146221 ENSG00000205693 MANSC4 - MANSC domain containing 4 protein-coding 191-178 chr5 130785857 130785959 + 2 NA Intergenic L1PA4|LINE|L1 379348 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 256-290 chr4 65563950 65564150 + 2 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 105438 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 565-11 chr1 242618399 242618775 + 2 NA Intergenic L1ME1|LINE|L1 -93890 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 354-346 chr4 117078431 117078629 + 2 NA Intergenic Intergenic 7046 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 541-76 chr16 35896481 35896797 + 2 NA Intergenic L1MEg|LINE|L1 150087 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 622-141 chr8 107339132 107339619 + 2 NA intron (NM_001199859, intron 2 of 8) L2a|LINE|L2 -2860 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 295-62 chr10 130258825 130259053 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 122530 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 370-425 chr7 104807596 104807866 + 2 NA intron (NM_199000, intron 2 of 2) intron (NM_199000, intron 2 of 2) -3639 NR_034142 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 364-57 chr10 47092567 47092774 + 2 NA Intergenic Intergenic 180948 NM_001320686 26095 Hs.440733 NM_015605 ENSG00000204179 PTPN20 CT126|PTPN20A|PTPN20B|bA142I17.1|bA42B19.1 protein tyrosine phosphatase non-receptor type 20 protein-coding 161-54 chr2 122220616 122220752 + 2 NA Intergenic Intergenic 465033 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 777-69 chr8 88399034 88399466 + 2 NA Intergenic L1MEh|LINE|L1 -71767 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 422-74 chr14 41284198 41284466 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -322524 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 352-293 chr20 63080186 63080448 + 2 NA non-coding (NR_033370, exon 2 of 5) non-coding (NR_033370, exon 2 of 5) -20975 NR_003244 768096 Hs.549606 NR_003244 HAR1A HAR1F|LINC00064|NCRNA00064 highly accelerated region 1A ncRNA 258-43 chr10 23581124 23581278 + 2 NA Intergenic Chap1_Mam|DNA|hAT-Charlie -113526 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 263-71 chr11 45736975 45737194 + 2 NA Intergenic Intergenic 14776 NR_047569 100507384 Hs.259426 NR_047569 ENSG00000254519 LOC100507384 - uncharacterized LOC100507384 ncRNA 243-322 chr4 60966551 60966720 + 2 NA Intergenic Intergenic 44016 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 266-54 chr10 127546391 127546639 + 2 NA Intergenic HAL1|LINE|L1 -2834 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 503-101 chr14 77892655 77892967 + 2 NA intron (NR_158988, intron 5 of 10) MLT1L|LTR|ERVL-MaLR 92702 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 238-245 chr3 123667484 123667695 + 2 NA intron (NM_001321309, intron 19 of 32) AluSz|SINE|Alu -22055 NR_046629 100873940 Hs.667316 NR_046629 ENSG00000250174 MYLK-AS2 - MYLK antisense RNA 2 ncRNA 425-179 chr3 31962610 31962865 + 2 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -19013 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 356-9 chr1 58487068 58487287 + 2 NA intron (NM_145243, intron 8 of 8) L2a|LINE|L2 59549 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 230-62 chr11 81188287 81188424 + 2 NA Intergenic Intergenic -425552 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 281-246 chr2 222778631 222778808 + 2 NA Intergenic Intergenic -82317 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 206-55 chr12 33913853 33914001 + 2 NA Intergenic L1PREC2|LINE|L1 -108569 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 282-29 chr1 237138728 237138949 + 2 NA intron (NM_001035, intron 1 of 104) L1MB8|LINE|L1 96654 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 300-155 chr17 62142645 62142902 + 2 NA Intergenic L1MB3|LINE|L1 -77495 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 422-246 chr5 125041166 125041535 + 2 NA intron (NR_109882, intron 1 of 5) intron (NR_109882, intron 1 of 5) 4519 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 254-98 chr13 79983888 79984133 + 2 NA Intergenic L1MC1|LINE|L1 -27067 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 345-3 chr1 5366261 5366527 + 2 NA Intergenic Intergenic 496347 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 296-458 chr8 57836248 57836538 + 2 NA Intergenic MER74A|LTR|ERVL 90244 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 357-495 chrX 87355394 87355662 + 2 NA Intergenic MLT2A2|LTR|ERVL -162274 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 254-276 chr4 72751818 72752035 + 2 NA Intergenic L1PA13|LINE|L1 -182705 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 344-506 chr8 129817268 129817596 + 2 NA Intergenic AluJb|SINE|Alu -30808 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 523-284 chr9 32078008 32078358 + 2 NA Intergenic HAL1|LINE|L1 -306420 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 509-160 chr3 175448237 175448589 + 2 NA intron (NM_207015, intron 6 of 13) intron (NM_207015, intron 6 of 13) 78873 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 421-120 chr19 19801829 19802193 + 2 NA intron (NM_001145404, intron 2 of 2) AluSx|SINE|Alu 19739 NM_001145404 440515 Hs.351906 NM_001099269 ENSG00000081665 ZNF506 - zinc finger protein 506 protein-coding 290-343 chr5 59462894 59463150 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) -106052 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 168-18 chr11 92178089 92178224 + 2 NA Intergenic MIRb|SINE|MIR -46878 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 379-36 chr10 31546283 31546511 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -146642 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 310-181 chr17 2056761 2056950 + 2 NA exon (NM_006497, exon 2 of 2) exon (NM_006497, exon 2 of 2) 545 NM_001098202 3090 Hs.72956 NM_006497 ENSG00000177374 HIC1 ZBTB29|ZNF901|hic-1 HIC ZBTB transcriptional repressor 1 protein-coding 622-124 chr6 143072170 143072687 + 2 NA intron (NM_001366355, intron 1 of 4) L1MD1|LINE|L1 11539 NR_158960 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 237-10 chr1 96097381 96097558 + 2 NA Intergenic Intergenic 105401 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 295-455 chr7 126162654 126162801 + 2 NA Intergenic L1MA5A|LINE|L1 895457 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 297-459 chr8 58707927 58708166 + 2 NA Intergenic AluJr|SINE|Alu -48193 NM_003580 8439 Hs.372000 NM_003580 ENSG00000035681 NSMAF FAN|GRAMD5 neutral sphingomyelinase activation associated factor protein-coding 247-261 chr3 61099674 61099836 + 2 NA intron (NR_148922, intron 2 of 3) L1PREC2|LINE|L1 151697 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 249-121 chr14 60718427 60718598 + 2 NA intron (NM_017420, intron 2 of 2) intron (NM_017420, intron 2 of 2) 5839 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 338-240 chr2 619287 619517 + 2 NA Intergenic Intergenic 57302 NM_001352681 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 382-330 chr5 81271730 81272084 + 2 NA intron (NR_034122, intron 1 of 3) L1PB1|LINE|L1 29662 NR_034123 100131067 Hs.655855 NR_034121 ENSG00000247572 CKMT2-AS1 - CKMT2 antisense RNA 1 ncRNA 291-232 chr2 119802114 119802388 + 2 NA intron (NM_002830, intron 1 of 26) L1MD|LINE|L1 42329 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 229-122 chr15 50634563 50634714 + 2 NA intron (NR_149154, intron 7 of 37) intron (NR_149154, intron 7 of 37) 52159 NR_149154 54822 Hs.512894 NM_017672 ENSG00000092439 TRPM7 ALSPDC|CHAK|CHAK1|LTRPC7|LTrpC-7|TRP-PLIK transient receptor potential cation channel subfamily M member 7 protein-coding 213-163 chr20 42429108 42429267 + 2 NA intron (NM_133170, intron 9 of 31) MIRb|SINE|MIR -256296 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 319-110 chr12 61830643 61830854 + 2 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 362091 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 315-205 chr19 23631352 23631557 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger 55758 NM_138330 171392 Hs.264345 NM_138330 ENSG00000197372 ZNF675 TBZF|TIZ zinc finger protein 675 protein-coding 281-19 chr1 188127435 188127689 + 2 NA Intergenic L1PA16|LINE|L1 683934 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 329-557 chr8 10206423 10206639 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 110880 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 358-200 chr2 53231796 53232145 + 2 NA Intergenic Intergenic -529355 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 456-19 chr1 216355873 216356280 + 2 NA intron (NM_206933, intron 4 of 71) MIRb|SINE|MIR 67320 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 205-31 chr10 36142852 36142982 + 2 NA Intergenic Intergenic 364615 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 306-395 chr5 56419414 56419618 + 2 NA Intergenic Intergenic 62253 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 596-183 chrX 136140073 136140439 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -6446 NR_027621 2273 Hs.435369 NM_001449 ENSG00000022267 FHL1 FCMSU|FHL-1|FHL1A|FHL1B|FLH1A|KYOT|RBMX1A|RBMX1B|SLIM|SLIM-1|SLIM1|SLIMMER|XMPMA four and a half LIM domains 1 protein-coding 488-150 chr2 183439583 183439913 + 2 NA Intergenic MIRb|SINE|MIR 315305 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 266-291 chr4 79672786 79672954 + 2 NA Intergenic L1PBa|LINE|L1 -154601 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 372-522 chrX 42422352 42422668 + 2 NA Intergenic L1PREC2|LINE|L1 355653 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 209-43 chr10 76267358 76267528 + 2 NA intron (NM_001305581, intron 5 of 6) L1MB4|LINE|L1 484682 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 234-89 chr13 113156867 113157002 + 2 NA Intergenic Intergenic -1714 NM_003891 8858 Hs.1011 NM_003891 ENSG00000126231 PROZ PZ protein Z, vitamin K dependent plasma glycoprotein protein-coding 416-158 chr2 18532049 18532296 + 2 NA Intergenic Intergenic 28481 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 289-283 chr22 34124373 34124563 + 2 NA Intergenic L1ME1|LINE|L1 -201580 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 233-322 chr6 5655177 5655347 + 2 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) 40010 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 287-412 chr8 105611139 105611382 + 2 NA intron (NM_001362837, intron 4 of 7) intron (NM_001362837, intron 4 of 7) 291717 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 336-516 chr7 52722748 52722983 + 2 NA Intergenic Intergenic -312768 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 322-167 chr15 27587807 27588029 + 2 NA Intergenic L2|LINE|L2 -426599 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 389-363 chr8 102045486 102045741 + 2 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 61181 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 278-152 chr16 82088175 82088347 + 2 NA intron (NM_002153, intron 3 of 4) intron (NM_002153, intron 3 of 4) 53008 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 253-328 chr5 52431287 52431427 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -356559 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 366-478 chrX 33845397 33845696 + 2 NA Intergenic L1M2|LINE|L1 286784 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 309-340 chr3 22901776 22902042 + 2 NA Intergenic L1M7|LINE|L1 300669 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 307-293 chr3 25901547 25901772 + 2 NA Intergenic Intergenic -27964 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 285-106 chr13 100408232 100408473 + 2 NA intron (NR_148027, intron 20 of 23) MER61-int|LTR|ERV1 72663 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 372-505 chr8 142327048 142327254 + 2 NA intron (NM_001366903, intron 6 of 9) L1M5|LINE|L1 76031 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 281-392 chr6 76074815 76074994 + 2 NA Intergenic Intergenic -2226 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 665-36 chr15 66598519 66598980 + 2 NA intron (NR_110372, intron 1 of 4) intron (NR_110372, intron 1 of 4) 16559 NR_110372 102723165 Hs.636703 NR_110372 ENSG00000259471 LINC01169 - long intergenic non-protein coding RNA 1169 ncRNA 278-31 chr10 56091457 56091613 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 269724 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 688-44 chr14 72836255 72836788 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 56128 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 402-49 chr11 54914733 54915129 + 2 NA Intergenic ALR/Alpha|Satellite|centr 208099 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 219-125 chr16 66134882 66135071 + 2 NA Intergenic Intergenic -231715 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 462-243 chr5 169322589 169322947 + 2 NA Intergenic L1ME3Cz|LINE|L1 -21629 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 544-80 chr15 100894676 100895144 + 2 NA non-coding (NR_135827, exon 2 of 2) non-coding (NR_135827, exon 2 of 2) 15079 NM_000693 220 Hs.459538 NM_000693 ENSG00000184254 ALDH1A3 ALDH1A6|ALDH6|MCOP8|RALDH3 aldehyde dehydrogenase 1 family member A3 protein-coding 234-357 chr7 27391696 27391826 + 2 NA Intergenic HAL1|LINE|L1 -144532 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 319-263 chr2 144704890 144705123 + 2 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 37039 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 345-40 chr1 237921323 237921519 + 2 NA intron (NR_027247, intron 11 of 11) intron (NR_027247, intron 11 of 11) -30499 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 346-134 chr14 61071746 61072005 + 2 NA intron (NR_033344, intron 15 of 16) L2b|LINE|L2 -90185 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 270-115 chr14 80382399 80382642 + 2 NA intron (NR_038355, intron 4 of 8) MIR|SINE|MIR -151463 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 311-416 chr5 107524667 107524945 + 2 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 146131 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 254-23 chr1 217232604 217232818 + 2 NA Intergenic Intergenic -95009 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 366-314 chr4 74461447 74461780 + 2 NA Intergenic L1MC|LINE|L1 16477 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 355-159 chr14 82334817 82335049 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -307699 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 290-186 chr18 72172353 72172567 + 2 NA Intergenic Intergenic 371882 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 535-180 chr4 42164813 42165301 + 2 NA Intergenic Intergenic -12402 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 305-498 chr7 15374455 15374733 + 2 NA intron (NM_001004320, intron 10 of 12) L1MEc|LINE|L1 187421 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 153 chr1 33903794 33903914 + 2 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) 34898 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 518-157 chr20 17141483 17141907 + 2 NA Intergenic Intergenic -84412 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 253-177 chr2 29476226 29476414 + 2 NA promoter-TSS (NR_136317) promoter-TSS (NR_136317) -943 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 348-545 chr9 3924145 3924446 + 2 NA intron (NM_001042413, intron 6 of 10) intron (NM_001042413, intron 6 of 10) 25649 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 279-143 chr18 1807729 1807930 + 2 NA Intergenic L1ME3C|LINE|L1 -448200 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 310-510 chr8 49895911 49896151 + 2 NA Intergenic Intergenic -13765 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 546-93 chr18 43092925 43093219 + 2 NA intron (NM_001272077, intron 1 of 5) intron (NM_001272077, intron 1 of 5) 22613 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 348-496 chr7 66259543 66259835 + 2 NA intron (NM_003596, intron 2 of 5) L1MC1|LINE|L1 54355 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 281-326 chr4 99634438 99634667 + 2 NA Intergenic Intergenic 20127 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 259-69 chr11 26263576 26263796 + 2 NA intron (NM_001313726, intron 1 of 27) intron (NM_001313726, intron 1 of 27) 24321 NR_132968 105376599 Hs.125537 NR_132968 ENSG00000254819 ANO3-AS1 - ANO3 antisense RNA 1 ncRNA 533-12 chr10 19174927 19175437 + 2 NA intron (NM_001142308, intron 13 of 39) intron (NM_001142308, intron 13 of 39) 126381 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 622-13 chr11 31050015 31050498 + 2 NA intron (NM_001367979, intron 20 of 38) L1PB1|LINE|L1 -57570 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 538-45 chr11 95663305 95663815 + 2 NA Intergenic L1MB1|LINE|L1 126222 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 339-242 chr2 12016801 12017051 + 2 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) 9810 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 531-102 chr2 31550643 31551058 + 2 NA intron (NM_000348, intron 1 of 4) L1MD|LINE|L1 30088 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 193-149 chr4 24621010 24621185 + 2 NA Intergenic L1MA9|LINE|L1 -36543 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 248-309 chr5 42139705 42139920 + 2 NA Intergenic Intergenic 35533 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 503-240 chr5 163756067 163756532 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 250680 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 287-347 chr6 46860621 46860789 + 2 NA intron (NM_001098518, intron 16 of 20) intron (NM_001098518, intron 16 of 20) -42766 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 374-426 chrX 66543851 66544082 + 2 NA Intergenic L1MA3|LINE|L1 72064 NM_001242310 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 425-123 chr19 27496559 27496833 + 2 NA Intergenic ALR/Alpha|Satellite|centr -296735 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 261-194 chr2 143458874 143459073 + 2 NA intron (NM_018460, intron 8 of 13) intron (NM_018460, intron 8 of 13) 329554 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 310-225 chr2 18021548 18021748 + 2 NA Intergenic L1PA16|LINE|L1 142981 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 147-41 chr2 66563960 66564069 + 2 NA intron (NM_002398, intron 9 of 12) intron (NM_002398, intron 9 of 12) -10016 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 408-17 chr1 109210754 109211077 + 2 NA Intergenic Intergenic -2978 NR_034072 6301 Hs.531176 NM_006513 ENSG00000031698 SARS NEDMAS|SERRS|SERS seryl-tRNA synthetase protein-coding 369-46 chr10 82260945 82261302 + 2 NA intron (NM_001370082, intron 3 of 10) THE1D|LTR|ERVL-MaLR -28203 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 239-352 chr6 62213580 62213742 + 2 NA intron (NR_146874, intron 1 of 13) AluY|SINE|Alu 72564 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 411-131 chr18 67267999 67268276 + 2 NA Intergenic L1MA4A|LINE|L1 186553 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 636-23 chr11 84685847 84686373 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 34832 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 241-83 chr12 41622669 41622799 + 2 NA Intergenic L1ME1|LINE|L1 -141455 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 272-202 chr2 99708165 99708410 + 2 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -218270 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 206-158 chr3 54480426 54480622 + 2 NA intron (NM_018398, intron 4 of 37) intron (NM_018398, intron 4 of 37) 159333 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 282-70 chr11 40327444 40327664 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -34424 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 324-4 chr1 28937486 28937660 + 2 NA intron (NM_001166006, intron 1 of 14) AluSg|SINE|Alu 22997 NM_001166006 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 132-18 chr12 62803844 62803930 + 2 NA intron (NM_020700, intron 2 of 9) L1M3|LINE|L1 131263 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 389-392 chrX 34520505 34520828 + 2 NA Intergenic Intergenic 136619 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 252-63 chr11 32367787 32367956 + 2 NA Intergenic Intergenic 32529 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 240-260 chr20 35200627 35200758 + 2 NA intron (NM_001355008, intron 4 of 14) AluSx|SINE|Alu -25998 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 281-330 chr4 138439746 138439963 + 2 NA Intergenic L1ME4c|LINE|L1 130143 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 563-10 chr1 211179988 211180374 + 2 NA Intergenic L1MC2|LINE|L1 -46033 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 343-2 chr1 9190692 9190869 + 2 NA intron (NR_132738, intron 2 of 2) L2a|LINE|L2 -8442 NR_132742 106614088 Hs.551837 NR_132742 ENSG00000228526 MIR34AHG - MIR34A host gene ncRNA 359-22 chr1 158366391 158366714 + 2 NA Intergenic MER70-int|LTR|ERVL 12658 NM_030893 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 364-264 chr22 43856731 43856996 + 2 NA intron (NM_014351, intron 1 of 6) L1MCc|LINE|L1 5650 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 896-22 chr3 106593848 106594548 + 2 NA Intergenic L2a|LINE|L2 646440 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 619-18 chr10 39325314 39325786 + 2 NA Intergenic ALR/Alpha|Satellite|centr 628954 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 584-91 chr21 31699594 31700034 + 2 NA intron (NM_020706, intron 7 of 19) intron (NM_020706, intron 7 of 19) 32304 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 295-434 chr7 36652702 36652961 + 2 NA intron (NM_001177507, intron 3 of 19) L1MC3|LINE|L1 -52711 NR_046764 100874264 Hs.690994 NR_046764 ENSG00000230539 AOAH-IT1 - AOAH intronic transcript 1 ncRNA 377-217 chr2 132793918 132794122 + 2 NA intron (NM_207481, intron 12 of 17) MIR|SINE|MIR -121537 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 334-161 chr14 86566549 86566732 + 2 NA Intergenic MIR|SINE|MIR -339138 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 368-129 chr13 88521129 88521399 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -19565 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 200-237 chr6 62858187 62858332 + 2 NA Intergenic SATR1|Satellite|Satellite 461718 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 260-372 chr6 55480901 55481043 + 2 NA intron (NR_109869, intron 3 of 4) L1MA3|LINE|L1 98242 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 323-39 chr10 5761275 5761488 + 2 NA exon (NM_001321785, exon 19 of 21) exon (NM_001321785, exon 19 of 21) 52053 NM_001494 2665 Hs.299055 NM_001494 ENSG00000057608 GDI2 HEL-S-46e|RABGDIB GDP dissociation inhibitor 2 protein-coding 420-228 chr5 44467596 44467835 + 2 NA Intergenic L1PA15|LINE|L1 42567 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 370-16 chr1 157602298 157602506 + 2 NA Intergenic MIRc|SINE|MIR -4317 NM_031282 83417 Hs.120260 NM_031282 ENSG00000163518 FCRL4 CD307d|FCRH4|IGFP2|IRTA1 Fc receptor like 4 protein-coding 378-449 chr9 19817886 19818233 + 2 NA Intergenic Intergenic -31040 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 294-74 chr12 16367058 16367338 + 2 NA intron (NM_001267598, intron 3 of 3) intron (NM_001267598, intron 3 of 3) 13781 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 248-188 chr2 77355631 77355794 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 166664 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 197-202 chr8 81819154 81819303 + 2 NA intron (NM_001348189, intron 6 of 9) intron (NM_001348189, intron 6 of 9) 22957 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 510-23 chr1 239297443 239297801 + 2 NA Intergenic Intergenic -88946 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 1087-20 chr8 127149528 127150401 + 2 NA Intergenic LOR1a|LTR|ERV1 47663 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 173-127 chr7 24149607 24149772 + 2 NA Intergenic L1ME1|LINE|L1 -134501 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 335-92 chr11 42425365 42425644 + 2 NA Intergenic Intergenic -171814 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 376-182 chr2 60947003 60947238 + 2 NA intron (NM_144709, intron 16 of 17) intron (NM_144709, intron 16 of 17) 65546 NM_001291746 5966 Hs.631886 NM_002908 ENSG00000162924 REL C-Rel REL proto-oncogene, NF-kB subunit protein-coding 238-96 chr13 104139995 104140169 + 2 NA Intergenic Intergenic 714882 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 158-121 chr8 137575489 137575597 + 2 NA Intergenic Intergenic -161955 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 403-212 chr4 27940370 27940613 + 2 NA Intergenic Intergenic 723012 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 485-54 chr12 60233820 60234221 + 2 NA Intergenic L1MEc|LINE|L1 544650 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 402-268 chr5 43579233 43579509 + 2 NA intron (NR_073113, intron 2 of 2) LTR49-int|LTR|ERV1 -21952 NM_183323 10605 Hs.482038 NM_006451 ENSG00000172239 PAIP1 - poly(A) binding protein interacting protein 1 protein-coding 257-189 chr2 71461804 71461984 + 2 NA intron (NM_003494, intron 1 of 54) intron (NM_003494, intron 1 of 54) -4805 NM_001130985 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 257-236 chr20 42626472 42626634 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -58930 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 223-343 chr8 86186369 86186512 + 2 NA Intergenic Intergenic 43941 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 276-76 chr11 13793710 13793895 + 2 NA intron (NR_149108, intron 3 of 3) L1PA3|LINE|L1 9416 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 609-78 chr3 106155034 106155455 + 2 NA Intergenic Intergenic -285843 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 277-81 chr11 110781331 110781538 + 2 NA Intergenic MIR|SINE|MIR -68245 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 402-327 chr7 104569459 104569787 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 234469 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 294-218 chr2 75138555 75138783 + 2 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 47857 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 258-16 chr1 118875982 118876170 + 2 NA Intergenic L2c|LINE|L2 112267 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 217-46 chr10 65633046 65633175 + 2 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 61685 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 474-79 chr14 52550677 52551008 + 2 NA intron (NM_001160047, intron 1 of 20) intron (NM_001160047, intron 1 of 20) 1663 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 394-44 chr10 78341661 78341966 + 2 NA Intergenic Intergenic 74471 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 385-388 chr8 121559609 121559989 + 2 NA Intergenic Intergenic -79547 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 427-228 chr6 95883912 95884275 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -131881 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 287-49 chr10 29260949 29261175 + 2 NA Intergenic AluJr4|SINE|Alu -28008 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 335-526 chr8 43423284 43423548 + 2 NA Intergenic Intergenic 130974 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 320-344 chr3 45781603 45781886 + 2 NA intron (NM_022405, intron 2 of 9) intron (NM_022405, intron 2 of 9) 14792 NM_020208 54716 Hs.413095 NM_020208 ENSG00000163817 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 member 20 protein-coding 302-316 chr4 40127963 40128185 + 2 NA intron (NM_001318359, intron 13 of 18) intron (NM_001318359, intron 13 of 18) -63006 NM_001278368 399 Hs.654594 NM_004310 ENSG00000168421 RHOH ARHH|TTF ras homolog family member H protein-coding 273-248 chr2 215888832 215889018 + 2 NA Intergenic Intergenic -45389 NR_037195 646324 Hs.655713 NR_037195 ENSG00000235770 LINC00607 - long intergenic non-protein coding RNA 607 ncRNA 155-28 chr11 43487998 43488121 + 2 NA intron (NM_018259, intron 21 of 23) MLT1B|LTR|ERVL-MaLR -71597 NR_031577 100313777 NR_031577 ENSG00000211568 MIR670 hsa-mir-670 microRNA 670 ncRNA 161-118 chr8 77108880 77109002 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger -107897 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 452-171 chr3 94365162 94365552 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 302296 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 269-257 chr3 100150763 100150969 + 2 NA intron (NM_001167924, intron 2 of 9) intron (NM_001167924, intron 2 of 9) -34958 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 229-63 chr11 44415445 44415635 + 2 NA Intergenic HERVL-int|LTR|ERVL -105401 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 277-48 chr10 35514910 35515126 + 2 NA intron (NM_001282854, intron 3 of 7) intron (NM_001282854, intron 3 of 7) -90323 NM_153368 219770 Hs.638922 NM_153368 ENSG00000177291 GJD4 CX40.1 gap junction protein delta 4 protein-coding 314-361 chr3 10474695 10474951 + 2 NA intron (NM_001353564, intron 2 of 20) intron (NM_001353564, intron 2 of 20) 30761 NM_001363862 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 321-479 chr5 153890452 153890678 + 2 NA intron (NR_146729, intron 3 of 3) L2a|LINE|L2 8422 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 335-329 chr22 47822173 47822479 + 2 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 190652 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 256-375 chr6 168721155 168721324 + 2 NA Intergenic Intergenic 243143 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 433-206 chr4 92546509 92546926 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 242318 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 529-205 chr7 92931220 92931565 + 2 NA Intergenic Intergenic -94765 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 311-179 chr16 60998353 60998551 + 2 NA Intergenic L1MC|LINE|L1 57314 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 257-128 chr15 95946285 95946487 + 2 NA Intergenic Intergenic 181455 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 415-208 chr5 17920486 17920838 + 2 NA intron (NR_134286, intron 6 of 7) intron (NR_134286, intron 6 of 7) 113388 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 246-332 chr5 108026071 108026222 + 2 NA intron (NM_001163315, intron 6 of 8) U2|snRNA|snRNA -355209 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 515-119 chr2 99514085 99514448 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 -24249 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 642-34 chr14 96012353 96012794 + 2 NA Intergenic L1MC|LINE|L1 -26751 NM_001282464 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 964-33 chr8 142051550 142052337 + 2 NA Intergenic L1MD1|LINE|L1 -124396 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 347-487 chr7 158066611 158066890 + 2 NA intron (NM_130843, intron 10 of 21) intron (NM_130843, intron 10 of 21) 212165 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 503-142 chr2 12042827 12043203 + 2 NA intron (NR_110196, intron 2 of 5) MIRb|SINE|MIR 35899 NR_110196 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 282-2 chr1 31005585 31005797 + 2 NA intron (NM_001020658, intron 5 of 21) intron (NM_001020658, intron 5 of 21) -37454 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 129-60 chr4 58530642 58530758 + 2 NA intron (NR_133943, intron 1 of 2) intron (NR_133943, intron 1 of 2) 5628 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 337-410 chr4 131061535 131061737 + 2 NA Intergenic LTR27D|LTR|ERV1 685275 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 344-355 chr4 52826662 52826915 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -35529 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 479-257 chr8 122657245 122657586 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 36691 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 302-82 chr11 84425403 84425589 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -108157 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 599-112 chr5 117390164 117390522 + 2 NA Intergenic Intergenic -25169 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 558-3 chr1 38704068 38704490 + 2 NA Intergenic L2a|LINE|L2 155493 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 248-232 chr22 27370322 27370474 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 59747 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 359-477 chr8 87055472 87055763 + 2 NA intron (NM_173538, intron 4 of 10) MER61F|LTR|ERV1 189202 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 258-30 chr1 210391794 210391948 + 2 NA intron (NM_001170564, intron 4 of 9).2 AluJr4|SINE|Alu 62505 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 200-52 chr12 3591684 3591815 + 2 NA intron (NM_019854, intron 8 of 9) intron (NM_019854, intron 8 of 9) -98930 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 531-152 chr3 59264448 59264828 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -214606 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 489-173 chr3 24318895 24319348 + 2 NA intron (NM_001252634, intron 2 of 11) L1ME3|LINE|L1 167797 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 271-259 chr3 22865866 22866074 + 2 NA Intergenic L1M5|LINE|L1 336608 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 307-353 chr4 115257889 115258155 + 2 NA Intergenic L1PB4|LINE|L1 -144402 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 137-11 chr11 81840797 81840923 + 2 NA Intergenic Intergenic 49976 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 362-268 chr3 30309223 30309462 + 2 NA Intergenic Intergenic -209526 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 450-162 chr2 234055599 234055964 + 2 NA intron (NM_006944, intron 2 of 7) L1ME4a|LINE|L1 5079 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 237-197 chr2 167310818 167311007 + 2 NA Intergenic Intergenic 123540 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 631-43 chr15 36308539 36309022 + 2 NA Intergenic L1MEb|LINE|L1 -270846 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 401-329 chr8 124312601 124312891 + 2 NA 3' UTR (NM_194291, exon 7 of 7) 3' UTR (NM_194291, exon 7 of 7) 59953 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 267-456 chrX 39116378 39116571 + 2 NA Intergenic LTR67B|LTR|ERVL 210888 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 136-56 chr21 29726805 29726883 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -21331 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 281-6 chr1 76680349 76680595 + 2 NA Intergenic Intergenic 98795 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 298-79 chr11 87952655 87952851 + 2 NA Intergenic L2b|LINE|L2 222690 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 375-460 chr9 117688794 117689112 + 2 NA Intergenic L1MA7|LINE|L1 -15450 NM_003266 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 229-59 chr11 23482102 23482270 + 2 NA Intergenic Intergenic -62996 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 319-68 chr10 75971481 75971684 + 2 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 188821 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 273-68 chr11 4851951 4852138 + 2 NA Intergenic L1M4a2|LINE|L1 -2836 NM_001004758 119692 Hs.553561 NM_001004758 ENSG00000176922 OR51S1 OR11-24 olfactory receptor family 51 subfamily S member 1 protein-coding 276-268 chr21 14711218 14711461 + 2 NA Intergenic Intergenic -68232 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 494-321 chrX 67143681 67144043 + 2 NA Intergenic L1MA1|LINE|L1 -400159 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 623-45 chr17 60492595 60493069 + 2 NA intron (NM_006380, intron 3 of 12) THE1B-int|LTR|ERVL-MaLR 33408 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 423-53 chr11 124131734 124132143 + 2 NA intron (NM_001130142, intron 11 of 18) L1ME3A|LINE|L1 16488 NM_001130142 4013 Hs.152944 NM_014622 ENSG00000110002 VWA5A BCSC-1|BCSC1|LOH11CR2A von Willebrand factor A domain containing 5A protein-coding 413-195 chr3 110726333 110726643 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 343471 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 315-136 chr14 64263888 64264102 + 2 NA intron (NR_073496, intron 4 of 7) L1MEd|LINE|L1 19080 NR_073497 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 339-249 chr2 38493233 38493461 + 2 NA intron (NR_110259, intron 2 of 4) intron (NR_110259, intron 2 of 4) 22393 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 283-225 chr2 48346912 48347135 + 2 NA intron (NM_002158, intron 3 of 6) intron (NM_002158, intron 3 of 6) 32341 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 439-216 chr4 146691951 146692285 + 2 NA Intergenic L1ME3Cz|LINE|L1 53225 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 400-291 chr5 98087606 98087950 + 2 NA intron (NR_146477, intron 4 of 4) intron (NR_146477, intron 4 of 4) 73461 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 430-224 chr4 138449472 138449795 + 2 NA Intergenic Intergenic 139922 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 304-536 chr8 125551340 125551576 + 2 NA Intergenic Intergenic 119249 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 578-138 chr5 76992228 76992721 + 2 NA Intergenic L1M5|LINE|L1 -37930 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 354-104 chr12 44256062 44256384 + 2 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 420142 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 946-27 chr8 135384800 135385462 + 2 NA Intergenic Intergenic -72325 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 240-368 chr6 8968891 8969069 + 2 NA Intergenic L1MCa|LINE|L1 316771 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 479-270 chr9 2872134 2872552 + 2 NA Intergenic L3|LINE|CR1 -28248 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 300-357 chr5 33021367 33021632 + 2 NA Intergenic Intergenic 74056 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 199-122 chr2 125864770 125864928 + 2 NA Intergenic LOR1a|LTR|ERV1 253136 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 201-37 chr10 125939822 125939966 + 2 NA intron (NM_001363549, intron 1 of 10) intron (NM_001363549, intron 1 of 10) 33379 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 328-516 chr6 151947172 151947482 + 2 NA intron (NM_001122741, intron 5 of 8) AluSx|SINE|Alu 138220 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 374-128 chr16 59437141 59437370 + 2 NA Intergenic L1MEf|LINE|L1 317936 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 277-345 chr6 25806795 25807063 + 2 NA intron (NM_005074, intron 10 of 12) L1PB3|LINE|L1 25123 NM_005074 6568 Hs.205816 NM_005074 ENSG00000124568 SLC17A1 NAPI-1|NPT-1|NPT1 solute carrier family 17 member 1 protein-coding 386-329 chr7 54175483 54175793 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -155059 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 353-567 chrX 79829005 79829322 + 2 NA Intergenic L1PA14|LINE|L1 -185590 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 351-237 chr2 130243455 130243724 + 2 NA Intergenic Intergenic -45150 NM_207312 112714 Hs.433336 NM_207312 ENSG00000152086 TUBA3E - tubulin alpha 3e protein-coding 448-231 chr5 178701392 178701778 + 2 NA Intergenic AluSq2|SINE|Alu 29074 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 425-83 chr14 60494593 60494924 + 2 NA Intergenic Intergenic -8695 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 430-105 chr16 48645951 48646374 + 2 NA Intergenic L1MA5A|LINE|L1 -35982 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 445-67 chr14 54945955 54946251 + 2 NA intron (NM_007086, intron 24 of 25) intron (NM_007086, intron 24 of 25) -43277 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 392-41 chr11 69108000 69108317 + 2 NA Intergenic Intergenic 24982 NR_036122 100422846 NR_036122 ENSG00000265539 MIR3164 - microRNA 3164 ncRNA 146-74 chr5 130938058 130938195 + 2 NA Intergenic Intergenic 227130 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 269-344 chr6 64691368 64691624 + 2 NA intron (NM_001292009, intron 22 of 43) L1MEf|LINE|L1 -609922 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 303-195 chr2 13749201 13749482 + 2 NA Intergenic L1P3|LINE|L1 651617 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 298-439 chr7 86478372 86478581 + 2 NA Intergenic Intergenic -165433 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 463-34 chr10 33521776 33522203 + 2 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -187084 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 455-109 chr19 23139038 23139390 + 2 NA intron (NM_001277403, intron 3 of 3) intron (NM_001277403, intron 3 of 3) 22189 NM_001277403 100129543 Hs.427120 NM_001277403 ENSG00000183850 ZNF730 - zinc finger protein 730 protein-coding 474-220 chr4 128235728 128236060 + 2 NA Intergenic Intergenic 51919 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 255-267 chr3 99937565 99937782 + 2 NA intron (NM_001042459, intron 1 of 4) L2c|LINE|L2 26725 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 287-137 chr14 65767455 65767721 + 2 NA Intergenic L2c|LINE|L2 296486 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 469-214 chr5 31061193 31061507 + 2 NA Intergenic Intergenic -132336 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 322-379 chr4 81524916 81525196 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger -53149 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 608-158 chr8 118243120 118243481 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -131481 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 339-575 chr8 89194905 89195199 + 2 NA Intergenic L1MC|LINE|L1 562659 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 538-56 chr12 104566508 104566994 + 2 NA intron (NM_018413, intron 1 of 2) intron (NM_018413, intron 1 of 2) -24882 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 669-10 chr1 237341843 237342456 + 2 NA intron (NM_001035, intron 3 of 104) intron (NM_001035, intron 3 of 104) -128970 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 337-495 chr6 90969662 90969941 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -382729 NM_145332 6885 Hs.594838 NM_003188 ENSG00000135341 MAP3K7 CSCF|FMD2|MEKK7|TAK1|TGF1a mitogen-activated protein kinase kinase kinase 7 protein-coding 380-81 chr12 3982767 3982969 + 2 NA Intergenic AluSq2|SINE|Alu -109420 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 299-60 chr10 85812152 85812443 + 2 NA intron (NM_017551, intron 8 of 15) L1M2c|LINE|L1 234566 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 488-111 chr18 43976582 43977018 + 2 NA Intergenic Intergenic 554897 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 859-14 chr16 52623153 52623931 + 2 NA Intergenic L2c|LINE|L2 -16567 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 240-220 chr2 81585070 81585226 + 2 NA Intergenic Intergenic -118202 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 429-62 chr11 124511939 124512346 + 2 NA Intergenic L1ME3|LINE|L1 31512 NM_001005195 219858 Hs.553634 NM_001005195 ENSG00000170953 OR8B12 OR11-317 olfactory receptor family 8 subfamily B member 12 protein-coding 641-89 chr4 112369522 112370061 + 2 NA intron (NM_001102406, intron 2 of 15) intron (NM_001102406, intron 2 of 15) 72422 NM_001102406 80216 Hs.652825 NM_025144 ENSG00000073331 ALPK1 8430410J10Rik|LAK alpha kinase 1 protein-coding 290-169 chr17 10964987 10965240 + 2 NA Intergenic Intergenic -127026 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 713-64 chr4 46812117 46812557 + 2 NA intron (NM_130902, intron 2 of 2) L1MA9|LINE|L1 96908 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 330-15 chr1 60181705 60181997 + 2 NA Intergenic L1MEc|LINE|L1 -108081 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 239-250 chr3 104611673 104611887 + 2 NA Intergenic L2b|LINE|L2 -754933 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 332-436 chr5 156194875 156195074 + 2 NA Intergenic (TGA)n|Simple_repeat|Simple_repeat -131783 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 747-4 chr1 87702972 87703411 + 2 NA Intergenic AluSc8|SINE|Alu -331536 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 297-54 chr10 61016315 61016508 + 2 NA intron (NR_108052, intron 1 of 1) LTR90B|LTR|LTR 136 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 395-74 chr12 70154612 70154939 + 2 NA Intergenic MER4-int|LTR|ERV1 -88255 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 592-55 chr15 61895019 61895521 + 2 NA intron (NM_001018088, intron 66 of 81) L1MA4|LINE|L1 165177 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 300-134 chr15 82686404 82686685 + 2 NA 3' UTR (NM_001348440, exon 5 of 5) 3' UTR (NM_001348440, exon 5 of 5) 23331 NM_004644 8120 Hs.199593 NM_004644 ENSG00000103723 AP3B2 EIEE48|NAPTB adaptor related protein complex 3 subunit beta 2 protein-coding 524-131 chr20 40067540 40067997 + 2 NA Intergenic AluSg|SINE|Alu 63307 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 208-142 chr2 226297913 226298069 + 2 NA Intergenic L1MB2|LINE|L1 155197 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 431-309 chr8 139038722 139038982 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -124811 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 315-339 chr4 60606728 60606993 + 2 NA Intergenic Intergenic -315759 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 588-141 chr6 146466740 146467253 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -76837 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 448-190 chr4 116011685 116012056 + 2 NA Intergenic Intergenic -287855 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 748-16 chr10 105927211 105927712 + 2 NA Intergenic L1PB1|LINE|L1 -107128 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 568-166 chr5 153684594 153685020 + 2 NA intron (NM_000827, intron 7 of 15) intron (NM_000827, intron 7 of 15) 192635 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 544-135 chr20 17695964 17696354 + 2 NA intron (NM_001159495, intron 1 of 2) L1ME2|LINE|L1 2484 NM_001159495 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 295-343 chr4 61065935 61066224 + 2 NA Intergenic L2a|LINE|L2 -77577 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 271-302 chr4 45049205 45049439 + 2 NA Intergenic Intergenic -322688 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 528-69 chr12 105637120 105637533 + 2 NA Intergenic L1MEf|LINE|L1 -66877 NR_110109 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 210-65 chr13 85790296 85790470 + 2 NA Intergenic Intergenic 9036 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 189-4 chr1 115225815 115225970 + 2 NA Intergenic Intergenic -57142 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 356-27 chr1 194837425 194837650 + 2 NA Intergenic Intergenic 1251178 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 289-473 chr8 125531323 125531553 + 2 NA Intergenic Intergenic 99229 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 334-196 chr16 65425995 65426218 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 150194 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 256-113 chr13 101358248 101358416 + 2 NA intron (NM_001350749, intron 6 of 43) L1PA8|LINE|L1 58176 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 479-177 chr4 184848872 184849267 + 2 NA intron (NR_132989, intron 2 of 2) intron (NR_132989, intron 2 of 2) 2041 NR_037510 100500818 NR_037510 ENSG00000266698 MIR3945 - microRNA 3945 ncRNA 113-38 chr4 79349231 79349316 + 2 NA Intergenic L1MA2|LINE|L1 -23212 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 223-55 chr11 95078881 95079042 + 2 NA Intergenic Tigger12|DNA|TcMar-Tigger -10885 NM_015036 23052 Hs.167115 NM_015036 ENSG00000149218 ENDOD1 - endonuclease domain containing 1 protein-coding 407-136 chr2 35008734 35009057 + 2 NA Intergenic Intergenic 331338 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 391-380 chr9 113022792 113022987 + 2 NA Intergenic L1M4b|LINE|L1 -10697 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 338-211 chr17 34562513 34562747 + 2 NA Intergenic Intergenic 16739 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 278-414 chr8 83259769 83259970 + 2 NA Intergenic MER57C2|LTR|ERV1 -143889 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 562-84 chr18 37410689 37411049 + 2 NA intron (NM_001353724, intron 2 of 12) intron (NM_001353724, intron 2 of 12) 55635 NR_132967 106635546 NR_132967 SNORA111 - small nucleolar RNA, H/ACA box 111 snoRNA 356-368 chr4 108958441 108958676 + 2 NA intron (NM_001256074, intron 6 of 31) intron (NM_001256074, intron 6 of 31) -195505 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 195-110 chr2 123896936 123897094 + 2 NA Intergenic L1MA4|LINE|L1 128159 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 414-44 chr11 42869009 42869308 + 2 NA Intergenic Intergenic 400211 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 311-110 chr12 108162722 108162943 + 2 NA intron (NM_001304447, intron 1 of 9) intron (NM_001304447, intron 1 of 9) 31046 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 406-67 chr13 96215319 96215671 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 124656 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 312-402 chr5 8751354 8751570 + 2 NA Intergenic L1PA15|LINE|L1 -88270 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 532-162 chr3 35190441 35190894 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 203356 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 414-68 chr12 41761384 41761706 + 2 NA Intergenic L1ME4a|LINE|L1 -2644 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 236-204 chr21 33602581 33602784 + 2 NA intron (NM_145858, intron 7 of 12) intron (NM_145858, intron 7 of 12) -13998 NM_017613 29980 Hs.436341 NM_017613 ENSG00000159147 DONSON B17|C21orf60|MIMIS|MISSLA downstream neighbor of SON protein-coding 596-15 chr1 221080661 221081100 + 2 NA Intergenic HAL1|LINE|L1 -200740 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 385-41 chr10 120271728 120272055 + 2 NA Intergenic L2b|LINE|L2 83332 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 661-70 chr3 112495549 112496070 + 2 NA intron (NM_001085357, intron 1 of 3) intron (NM_001085357, intron 1 of 3) 3663 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 748-77 chr6 73938655 73939388 + 2 NA Intergenic Intergenic -130430 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 331-197 chr16 81511399 81511686 + 2 NA intron (NM_030629, intron 1 of 20) L1MC5a|LINE|L1 16188 NM_030629 80790 Hs.594095 NM_030629 ENSG00000153815 CMIP TCMIP c-Maf inducing protein protein-coding 404-28 chr10 23835858 23836107 + 2 NA intron (NM_001098500, intron 1 of 18) MLT1B|LTR|ERVL-MaLR 141255 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 400-186 chr2 208230513 208230866 + 2 NA Intergenic Intergenic 23614 NM_001282387 3417 Hs.593422 NM_005896 ENSG00000138413 IDH1 HEL-216|HEL-S-26|IDCD|IDH|IDP|IDPC|PICD isocitrate dehydrogenase (NADP(+)) 1, cytosolic protein-coding 398-28 chr1 220615331 220615564 + 2 NA intron (NM_018650, intron 6 of 17) intron (NM_018650, intron 6 of 17) -74916 NM_024709 79762 Hs.519839 NM_024709 ENSG00000162817 C1orf115 - chromosome 1 open reading frame 115 protein-coding 328-555 chr8 36387575 36387814 + 2 NA Intergenic Intergenic -396680 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 491-199 chr5 3977115 3977452 + 2 NA Intergenic L1MEf|LINE|L1 381451 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 329-292 chr2 150517024 150517321 + 2 NA Intergenic Intergenic -29477 NM_005168 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 269-132 chr15 46006330 46006506 + 2 NA Intergenic Intergenic 301223 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 491-121 chr2 88222912 88223305 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 49969 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 660-86 chr5 126536526 126537109 + 2 NA Intergenic L1MC4|LINE|L1 58402 NM_001182 501 Hs.483239 NM_001182 ENSG00000164904 ALDH7A1 ATQ1|EPD|PDE aldehyde dehydrogenase 7 family member A1 protein-coding 296-463 chr8 78865368 78865621 + 2 NA Intergenic L1MA2|LINE|L1 27965 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 417-190 chr4 25910458 25910847 + 2 NA Intergenic MIR|SINE|MIR -3540 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 457-241 chr7 103828785 103829149 + 2 NA intron (NM_005045, intron 3 of 64) MIR|SINE|MIR 160549 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 366-465 chr9 22358435 22358694 + 2 NA Intergenic Intergenic -88260 NM_022160 63951 Hs.371976 NM_022160 ENSG00000176399 DMRTA1 DMO|DMRT4 DMRT like family A1 protein-coding 643-139 chrX 81840434 81840911 + 2 NA Intergenic L2a|LINE|L2 638570 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 425-138 chr2 79452942 79453336 + 2 NA Intergenic Intergenic 47705 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 449-25 chr10 14250878 14251196 + 2 NA intron (NR_134578, intron 2 of 3) intron (NR_134578, intron 2 of 3) 79847 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 586-35 chr11 92988560 92989041 + 2 NA Intergenic L1M3|LINE|L1 19177 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 349-269 chr2 118947524 118947753 + 2 NA intron (NM_006770, intron 1 of 16) L1MD1|LINE|L1 5469 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 386-306 chr5 179290573 179290807 + 2 NA intron (NM_014244, intron 2 of 21) intron (NM_014244, intron 2 of 21) 54771 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 304-48 chr10 39135273 39135517 + 2 NA Intergenic ALR/Alpha|Satellite|centr 438799 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 297-381 chr5 144618805 144619088 + 2 NA Intergenic L1MEf|LINE|L1 413555 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 289-192 chr18 66845613 66845826 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -235865 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 390-355 chr7 65299768 65300075 + 2 NA Intergenic MER83B-int|LTR|ERV1 -73878 NM_001287532 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 363-382 chr5 178309958 178310224 + 2 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) -77269 NR_103510 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 269-150 chr16 78917774 78918036 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 682832 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 218-365 chrX 81931011 81931163 + 2 NA Intergenic Intergenic 728985 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 679-33 chr15 60304839 60305482 + 2 NA Intergenic MLT2A1|LTR|ERVL 92826 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 354-463 chr8 85991653 85991904 + 2 NA Intergenic Intergenic 77890 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 226-388 chr9 123850070 123850232 + 2 NA intron (NM_001352968, intron 2 of 18) Tigger1|DNA|TcMar-Tigger 79975 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 320-472 chr5 174155970 174156231 + 2 NA Intergenic L2c|LINE|L2 110394 NM_015980 51617 Hs.559412 NM_015980 ENSG00000170091 NSG2 CALY3|HMP19 neuronal vesicle trafficking associated 2 protein-coding 435-225 chr6 168487471 168487784 + 2 NA intron (NM_001166412, intron 1 of 12) AluSx1|SINE|Alu 46443 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 272-240 chr20 40147968 40148204 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 143625 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 323-43 chr10 20095218 20095460 + 2 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 278907 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 319-254 chr2 116299837 116300078 + 2 NA Intergenic L1MA4|LINE|L1 956142 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 221-84 chr14 58174931 58175131 + 2 NA Intergenic Intergenic -22818 NM_001001872 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 388-252 chr4 70050391 70050645 + 2 NA promoter-TSS (NM_002159) promoter-TSS (NM_002159) 80 NM_001368990 3346 Hs.250959 NM_002159 ENSG00000126550 HTN1 HIS1 histatin 1 protein-coding 649-113 chr8 131272779 131273343 + 2 NA Intergenic Intergenic -232152 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 222-306 chr5 112310030 112310228 + 2 NA intron (NM_001347887, intron 1 of 23) MLT1E2|LTR|ERVL-MaLR 81846 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 570-114 chr2 154998294 154998760 + 2 NA Intergenic Intergenic 299832 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 186-135 chr6 45942782 45942879 + 2 NA intron (NM_001114086, intron 3 of 5) intron (NM_001114086, intron 3 of 5) -5233 NR_045673 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 136-72 chr5 150985180 150985259 + 2 NA Intergenic Intergenic -35372 NM_002084 2878 Hs.386793 NM_002084 ENSG00000211445 GPX3 GPx-P|GSHPx-3|GSHPx-P glutathione peroxidase 3 protein-coding 176-131 chr7 48538578 48538721 + 2 NA intron (NM_152701, intron 55 of 61) L1ME3B|LINE|L1 367191 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 319-108 chr12 31979283 31979568 + 2 NA intron (NM_018169, intron 3 of 5) MER21C|LTR|ERVL 20010 NM_018169 55196 Hs.445129 NM_018169 ENSG00000174718 RESF1 C12orf35|GET|KIAA1551|UTA2-1 retroelement silencing factor 1 protein-coding 399-118 chr17 58935211 58935560 + 2 NA intron (NM_014906, intron 1 of 6) L2a|LINE|L2 171495 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 476-18 chr1 233449832 233450185 + 2 NA Intergenic AluSx|SINE|Alu 122284 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 238-90 chr13 46234464 46234650 + 2 NA intron (NM_001282460, intron 5 of 9) intron (NM_001282460, intron 5 of 9) 22629 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 270-155 chr17 60506235 60506474 + 2 NA intron (NM_006380, intron 1 of 12) L2b|LINE|L2 19886 NM_001282476 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 226-124 chr17 33963712 33963862 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 193019 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 373-400 chr8 53386690 53386977 + 2 NA Intergenic Intergenic -135136 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 774-74 chr5 96248305 96249035 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 169532 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 396-331 chr7 46231715 46232049 + 2 NA Intergenic L1MCa|LINE|L1 -310610 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 210-176 chr3 83419924 83420095 + 2 NA Intergenic L1MC3|LINE|L1 1433867 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 549-60 chr14 72858273 72858790 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 34118 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 274-79 chr11 81977262 81977530 + 2 NA intron (NR_120571, intron 6 of 7) L1MC4|LINE|L1 -86560 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 465-102 chr17 34860759 34861047 + 2 NA Intergenic LTR16C|LTR|ERVL 100557 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 239-163 chr2 35214619 35214753 + 2 NA Intergenic Intergenic -256719 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 383-10 chr1 78790118 78790327 + 2 NA Intergenic Intergenic 140391 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 336-590 chr9 120155111 120155340 + 2 NA Intergenic Intergenic 89825 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 197-127 chr22 32221219 32221394 + 2 NA intron (NM_014227, intron 13 of 14) intron (NM_014227, intron 13 of 14) 16191 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 371-115 chr14 98378713 98378972 + 2 NA Intergenic Intergenic -332771 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 481-296 chr8 92003272 92003707 + 2 NA intron (NM_004349, intron 5 of 10) intron (NM_004349, intron 5 of 10) 14191 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 293-445 chr8 113437766 113438026 + 2 NA promoter-TSS (NM_198123) promoter-TSS (NM_198123) -957 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 369-428 chr8 135297390 135297688 + 2 NA intron (NR_120396, intron 4 of 4) L1ME2|LINE|L1 63408 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 437-304 chrX 95332573 95332891 + 2 NA Intergenic L1PBa|LINE|L1 -269506 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 417-158 chr2 188523422 188523744 + 2 NA intron (NM_016315, intron 5 of 11) intron (NM_016315, intron 5 of 11) 226091 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 370-246 chr2 137243357 137243610 + 2 NA intron (NM_001316349, intron 10 of 27) intron (NM_001316349, intron 10 of 27) 477938 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 375-252 chr22 33827255 33827586 + 2 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 93008 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 342-443 chr6 22816201 22816412 + 2 NA Intergenic L1MA2|LINE|L1 -98382 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 174-157 chr9 123830377 123830521 + 2 NA intron (NM_001352968, intron 2 of 18) L1ME2|LINE|L1 99677 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 341-347 chr3 144898287 144898521 + 2 NA Intergenic Intergenic 925323 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 438-20 chr1 192922579 192922934 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 25501 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 332-217 chr18 78274355 78274539 + 2 NA Intergenic L1MC2|LINE|L1 -280720 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 317-201 chr18 63631059 63631352 + 2 NA Intergenic L1MA8|LINE|L1 13051 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 214-108 chr15 70547722 70547858 + 2 NA Intergenic L1MC4a|LINE|L1 38816 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 236-182 chr2 128334022 128334175 + 2 NA Intergenic MER30|DNA|hAT-Charlie -15230 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 347-520 chr8 106956369 106956691 + 2 NA Intergenic L1MD|LINE|L1 -186286 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 391-114 chr14 86964072 86964358 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 58437 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 247-65 chr11 84870201 84870418 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 53112 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 229-287 chr4 171532389 171532565 + 2 NA Intergenic Intergenic 106286 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 547-145 chr3 124673772 124674192 + 2 NA intron (NM_001323001, intron 14 of 14) intron (NM_001323001, intron 14 of 14) -56384 NR_033434 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 462-278 chr8 56845816 56846227 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 147846 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 406-317 chrX 35580042 35580351 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -218146 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 347-434 chr6 54729779 54730089 + 2 NA Intergenic Intergenic -116837 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 638-141 chr6 141144827 141145344 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 461271 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 261-350 chr7 42257083 42257275 + 2 NA Intergenic L1MB8|LINE|L1 -19970 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 356-321 chr3 45150003 45150272 + 2 NA Intergenic (AGAA)n|Simple_repeat|Simple_repeat -3715 NM_178181 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 304-234 chr2 3941414 3941582 + 2 NA Intergenic L1PB|LINE|L1 32534 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 494-127 chr2 59482118 59482515 + 2 NA Intergenic Intergenic 264608 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 333-29 chr1 113787304 113787508 + 2 NA intron (NM_018364, intron 2 of 6) intron (NM_018364, intron 2 of 6) 25070 NM_018364 54665 Hs.486285 NM_018364 ENSG00000081019 RSBN1 KDM9|ROSBIN round spermatid basic protein 1 protein-coding 499-54 chr12 23515245 23515534 + 2 NA Intergenic Intergenic 69197 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 346-382 chr5 28207912 28208188 + 2 NA Intergenic Intergenic 79615 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 373-55 chr10 64119919 64120111 + 2 NA Intergenic L1MEd|LINE|L1 -598125 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 369-392 chr7 122859502 122859793 + 2 NA intron (NM_001167940, intron 1 of 29) MER2|DNA|TcMar-Tigger 26813 NM_001363398 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 501-44 chr12 13578818 13579206 + 2 NA intron (NM_000834, intron 9 of 12) intron (NM_000834, intron 9 of 12) -202267 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 353-429 chr5 156710651 156710888 + 2 NA intron (NM_001128209, intron 6 of 7) MER4D1|LTR|ERV1 -139526 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 329-441 chr5 8623954 8624144 + 2 NA Intergenic L1MB7|LINE|L1 163124 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 312-537 chr8 137638553 137638793 + 2 NA Intergenic Intergenic -225085 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 205-18 chr1 199274823 199275000 + 2 NA intron (NR_147896, intron 3 of 3) L1M1|LINE|L1 126313 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 623-46 chr17 61436400 61436797 + 2 NA Intergenic L1MA9|LINE|L1 -15824 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 314-432 chr4 79840778 79840982 + 2 NA intron (NR_026555, intron 1 of 1) L1PA3|LINE|L1 13409 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 377-395 chr8 66712783 66713076 + 2 NA intron (NM_001033578, intron 1 of 16) CpG 148 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 283-165 chr16 72054273 72054426 + 2 NA promoter-TSS (NM_001126102) promoter-TSS (NM_001126102) -156 NM_005143 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 270-294 chr5 37662743 37662970 + 2 NA intron (NM_001345998, intron 10 of 17) intron (NM_001345998, intron 10 of 17) 171966 NM_001278098 2668 Hs.248114 NM_000514 ENSG00000168621 GDNF ATF|ATF1|ATF2|HFB1-GDNF|HSCR3 glial cell derived neurotrophic factor protein-coding 451-20 chr1 227557617 227557915 + 2 NA Intergenic HERV3-int|LTR|ERV1 -5790 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 235-55 chr10 122276285 122276478 + 2 NA intron (NM_144587, intron 2 of 15) L1MB5|LINE|L1 5085 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 328-188 chr15 100428526 100428778 + 2 NA intron (NR_120374, intron 4 of 4) L2c|LINE|L2 55713 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 339-610 chr9 83772890 83773192 + 2 NA intron (NM_025211, intron 7 of 12) L1MD3|LINE|L1 44728 NM_025211 80318 Hs.522255 NM_025211 ENSG00000165113 GKAP1 FKSG21|GKAP42 G kinase anchoring protein 1 protein-coding 298-156 chr16 66299911 66300179 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -66646 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 419-163 chr20 9600106 9600403 + 2 NA intron (NM_020341, intron 4 of 10) L1MB4|LINE|L1 -85256 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 330-378 chr4 49086987 49087242 + 2 NA Intergenic ALR/Alpha|Satellite|centr 100472 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 694-110 chr6 61547190 61547697 + 2 NA intron (NR_146870, intron 14 of 15) intron (NR_146870, intron 14 of 15) -26687 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 381-338 chr6 104142695 104143060 + 2 NA Intergenic Intergenic 716669 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 410-204 chr3 181940585 181940830 + 2 NA Intergenic Intergenic -11657 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 143-39 chr2 62183224 62183311 + 2 NA Intergenic Intergenic -12848 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 698-72 chr5 161659516 161659963 + 2 NA Intergenic L1MC3|LINE|L1 -25982 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 997-12 chr2 106859690 106860381 + 2 NA intron (NM_032528, intron 1 of 5) L2a|LINE|L2 25993 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 518-263 chr6 146472575 146472937 + 2 NA Intergenic LTR50|LTR|ERVL -71077 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 212-304 chr7 64624591 64624778 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -41399 NM_001282359 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 307-145 chr14 71855260 71855456 + 2 NA Intergenic L1MC5a|LINE|L1 -76813 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 338-411 chr5 12518022 12518262 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -56715 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 236-267 chr4 139639326 139639473 + 2 NA Intergenic LTR33A_|LTR|ERVL -26369 NM_001204366 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 442-228 chr5 30530529 30530876 + 2 NA Intergenic Intergenic 650142 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 163-60 chr18 60808856 60808976 + 2 NA Intergenic Intergenic -436141 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 729-58 chr4 54733020 54733442 + 2 NA intron (NM_000222, intron 17 of 20) intron (NM_000222, intron 17 of 20) 75303 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 188-104 chr2 133047775 133047927 + 2 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 132294 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 314-2 chr1 14285570 14285750 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 134313 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 1342-3 chr19 27614315 27615256 + 2 NA Intergenic ALR/Alpha|Satellite|centr -178646 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 274-305 chr5 41028640 41028814 + 2 NA intron (NM_173489, intron 24 of 41) L1MA9|LINE|L1 42615 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 404-62 chr11 72211084 72211406 + 2 NA Intergenic L1MB2|LINE|L1 -5549 NM_001113535 2350 Hs.433159 NM_000803 ENSG00000165457 FOLR2 BETA-HFR|FBP|FBP/PL-1|FR-BETA|FR-P3|FRbeta folate receptor beta protein-coding 270-351 chr7 25558833 25559075 + 2 NA Intergenic L1MB7|LINE|L1 104186 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 546-153 chr3 122605328 122605854 + 2 NA intron (NM_001113523, intron 1 of 11) AluJo|SINE|Alu -10024 NM_001308321 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 583-49 chr12 128867561 128867980 + 2 NA intron (NM_001366887, intron 1 of 10) intron (NM_001366887, intron 1 of 10) 14292 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 249-421 chr8 101290081 101290272 + 2 NA Intergenic Intergenic -78717 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 449-31 chr10 73602574 73602962 + 2 NA intron (NM_001350995, intron 1 of 21) AluSx|SINE|Alu -11426 NR_146998 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 840-32 chr21 27517724 27518320 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -204357 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 381-112 chr15 24981909 24982191 + 2 NA promoter-TSS (NR_001293) promoter-TSS (NR_001293) 56 NR_001293 91380 NR_001293 ENSG00000276314 SNORD107 HBII-436 small nucleolar RNA, C/D box 107 snoRNA 181-58 chr18 13913062 13913212 + 2 NA intron (NM_001291911, intron 1 of 1) intron (NM_001291911, intron 1 of 1) 2399 NM_000529 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 208-284 chr9 74400472 74400652 + 2 NA Intergenic Intergenic 29031 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 174-134 chr6 145447943 145448067 + 2 NA Intergenic Intergenic 238872 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 573-148 chr5 85992730 85993106 + 2 NA Intergenic MLT2B4|LTR|ERVL -289526 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 252-90 chr12 48278260 48278485 + 2 NA Intergenic L1PA3|LINE|L1 -50608 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 391-3 chr1 35529510 35529837 + 2 NA intron (NM_024874, intron 2 of 20) L1M2|LINE|L1 27730 NM_024874 79932 Hs.456507 NM_024874 ENSG00000142687 KIAA0319L AAVR|AAVRL KIAA0319 like protein-coding 453-255 chr7 46405346 46405633 + 2 NA Intergenic MIRb|SINE|MIR 291633 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 317-211 chr2 3281752 3281958 + 2 NA intron (NM_001330530, intron 3 of 9) intron (NM_001330530, intron 3 of 9) 95963 NM_001330530 7260 Hs.502770 NM_003310 ENSG00000032389 EIPR1 EIPR-1|TSSC1 EARP complex and GARP complex interacting protein 1 protein-coding 334-560 chr9 940820 941072 + 2 NA intron (NM_001363767, intron 4 of 4) L1MB3|LINE|L1 -35709 NM_021240 58524 Hs.189174 NM_021240 ENSG00000064218 DMRT3 DMRTA3 doublesex and mab-3 related transcription factor 3 protein-coding 361-489 chrX 78005940 78006136 + 2 NA intron (NM_001282224, intron 6 of 21) L1ME4b|LINE|L1 -36400 NM_001029891 441531 Hs.632822 NM_001029891 ENSG00000226784 PGAM4 PGAM-B|PGAM1|PGAM3|dJ1000K24.1 phosphoglycerate mutase family member 4 protein-coding 212-126 chr18 10353285 10353488 + 2 NA Intergenic Intergenic 60984 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 308-212 chr19 52154664 52154900 + 2 NA 3' UTR (NM_001102657, exon 5 of 5) 3' UTR (NM_001102657, exon 5 of 5) -14844 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 550-204 chr6 124899755 124900201 + 2 NA Intergenic Intergenic -62567 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 394-137 chr17 69056332 69056592 + 2 NA intron (NM_080283, intron 1 of 38) L1MCa|LINE|L1 4465 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 224-100 chr15 63534148 63534316 + 2 NA intron (NR_046342, intron 3 of 15) intron (NR_046342, intron 3 of 15) 29639 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 291-407 chr7 53309396 53309616 + 2 NA Intergenic Intergenic 273873 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 289-221 chr2 66960975 66961155 + 2 NA intron (NR_110169, intron 4 of 4) intron (NR_110169, intron 4 of 4) -38575 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 469-273 chr8 23601712 23602063 + 2 NA Intergenic AluSz|SINE|Alu 72931 NM_001317814 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 586-4 chr1 38404453 38404856 + 2 NA Intergenic L1PB1|LINE|L1 -70542 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 319-194 chr17 73749786 73749972 + 2 NA non-coding (NR_027146, exon 4 of 4) non-coding (NR_027146, exon 4 of 4) 12025 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 230-51 chr10 112034202 112034358 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 149485 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 419-87 chr14 36409212 36409526 + 2 NA Intergenic Intergenic -88693 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 324-39 chr1 216343272 216343525 + 2 NA intron (NM_206933, intron 4 of 71) AluJo|SINE|Alu 79998 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 224-105 chr16 34235069 34235262 + 2 NA Intergenic ALR/Alpha|Satellite|centr 71587 NR_162093 113218496 NR_162093 MIR9901 - microRNA 9901 ncRNA 369-295 chr4 84754765 84754974 + 2 NA intron (NM_014991, intron 34 of 67) MIR|SINE|MIR 171742 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 386-171 chr2 62804826 62805189 + 2 NA intron (NM_001142615, intron 5 of 22) MER1B|DNA|hAT-Charlie 98110 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 461-256 chr8 14966331 14966687 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -112999 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 447-56 chr12 39127798 39128235 + 2 NA Intergenic Intergenic -222425 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 560-183 chr8 74394792 74395321 + 2 NA intron (NM_001362931, intron 5 of 5) L2c|LINE|L2 44653 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 309-108 chr12 50570152 50570357 + 2 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 65269 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 422-142 chr2 26816100 26816373 + 2 NA Intergenic AluSx|SINE|Alu 30180 NM_001809 1058 Hs.1594 NM_001809 ENSG00000115163 CENPA CENP-A|CenH3 centromere protein A protein-coding 304-446 chr5 166798443 166798621 + 2 NA Intergenic L1MA1|LINE|L1 127838 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 680-30 chr12 126689549 126690007 + 2 NA intron (NR_110034, intron 1 of 2) intron (NR_110034, intron 1 of 2) 540 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 376-406 chr8 101171581 101171828 + 2 NA Intergenic Intergenic 33969 NM_016096 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 244-143 chr19 51227489 51227657 + 2 NA intron (NM_001772, intron 4 of 6) L1MA5A|LINE|L1 2493 NM_001772 945 Hs.83731 NM_001772 ENSG00000105383 CD33 SIGLEC-3|SIGLEC3|p67 CD33 molecule protein-coding 277-226 chr20 16917392 16917652 + 2 NA Intergenic Intergenic 169169 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 334-299 chr2 218078217 218078424 + 2 NA intron (NR_034176, intron 11 of 13) L2a|LINE|L2 9305 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 331-280 chr2 127897970 127898175 + 2 NA Intergenic L1MD1|LINE|L1 -12132 NM_001199140 83607 Hs.546449 NM_031445 ENSG00000144233 AMMECR1L - AMMECR1 like protein-coding 259-385 chr8 64072328 64072563 + 2 NA intron (NR_125826, intron 4 of 4) intron (NR_125826, intron 4 of 4) 296113 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 260-206 chr2 52074410 52074611 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -296138 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 292-48 chr10 65516427 65516703 + 2 NA Intergenic L1MA3|LINE|L1 -54860 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 155-12 chr1 151519874 151520015 + 2 NA intron (NM_020770, intron 2 of 20) intron (NM_020770, intron 2 of 20) 8557 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 544-91 chr17 43130244 43130680 + 2 NA intron (NR_138145, intron 1 of 7) AluSz|SINE|Alu 4905 NR_138145 10230 Hs.373818 NM_005821 ENSG00000198496 NBR2 NCRNA00192 neighbor of BRCA1 lncRNA 2 ncRNA 740-6 chr1 187508244 187508653 + 2 NA Intergenic MLT2B2|LTR|ERVL 64820 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 187-59 chr16 9497345 9497510 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -41922 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 265-338 chr6 81979759 81979924 + 2 NA intron (NR_149135, intron 3 of 3) L1MC4|LINE|L1 -41420 NR_149134 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 156-97 chr7 28999961 29000079 + 2 NA intron (NR_038965, intron 2 of 4) intron (NR_038965, intron 2 of 4) 20053 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 353-284 chr20 40394619 40394800 + 2 NA Intergenic Intergenic 294527 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 159-103 chr9 69586355 69586484 + 2 NA intron (NM_001163, intron 1 of 12) intron (NM_001163, intron 1 of 12) 85952 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 644-80 chr6 1353406 1353812 + 2 NA Intergenic L1PBa|LINE|L1 -35967 NM_001452 2295 Hs.484423 NM_001452 ENSG00000137273 FOXF2 FKHL6|FREAC-2|FREAC2 forkhead box F2 protein-coding 322-34 chr1 188819367 188819565 + 2 NA Intergenic Intergenic 1375838 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 273-111 chr12 114170977 114171218 + 2 NA Intergenic Intergenic 70673 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 313-309 chr20 42862928 42863129 + 2 NA intron (NM_133170, intron 2 of 31) MIRc|SINE|MIR -105715 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 593-153 chr8 120776965 120777427 + 2 NA TTS (NR_125419) TTS (NR_125419) 15943 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 332-523 chr8 77158515 77158722 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -157574 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 634-20 chr10 82717080 82717538 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -484389 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 231-347 chr8 66295163 66295365 + 2 NA Intergenic L1MD1|LINE|L1 103150 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 358-504 chr8 139047076 139047307 + 2 NA Intergenic AluJb|SINE|Alu -133150 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 129-20 chr14 71494292 71494358 + 2 NA intron (NM_001284247, intron 1 of 23) L1M4|LINE|L1 6464 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 704-70 chr5 124010872 124011349 + 2 NA Intergenic Intergenic 427410 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 291-80 chr11 101716339 101716622 + 2 NA Intergenic Intergenic -132473 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 573-28 chr10 81731834 81732236 + 2 NA Intergenic Intergenic -143159 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 343-128 chr13 83476421 83476709 + 2 NA Intergenic Intergenic 405828 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 204-209 chr3 174516752 174516860 + 2 NA Intergenic Intergenic -342528 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 403-238 chr5 13289923 13290235 + 2 NA Intergenic L1PB|LINE|L1 -257193 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 409-271 chr7 4381622 4382019 + 2 NA Intergenic MER110|LTR|ERV1 -246983 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 356-100 chr12 17153213 17153480 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 164599 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 236-272 chr5 3923301 3923490 + 2 NA Intergenic Intergenic 327563 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 205-12 chr1 53992744 53992924 + 2 NA Intergenic MER52A|LTR|ERV1 25352 NM_001276395 388633 Hs.439583 NM_001010978 ENSG00000203985 LDLRAD1 - low density lipoprotein receptor class A domain containing 1 protein-coding 300-310 chr4 30732144 30732344 + 2 NA 3' UTR (NM_002589, exon 2 of 2) 3' UTR (NM_002589, exon 2 of 2) 11875 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 538-204 chr5 108497061 108497513 + 2 NA Intergenic Intergenic -115189 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 358-386 chr5 125151488 125151733 + 2 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 114779 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 396-269 chr5 8688901 8689235 + 2 NA Intergenic LTR102_Mam|LTR|ERVL -150664 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 374-50 chr11 44648348 44648573 + 2 NA Intergenic L1ME1|LINE|L1 -78502 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 537-112 chr2 80662851 80663229 + 2 NA Intergenic Intergenic 349661 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 440-37 chr11 108082856 108083214 + 2 NA intron (NM_003478, intron 11 of 18) L1ME2z|LINE|L1 -38532 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 341-48 chr1 231815095 231815400 + 2 NA non-coding (NR_002227, exon 1 of 1) non-coding (NR_002227, exon 1 of 1) 3270 NR_002227 27184 Hs.720568 NR_002227 DISC2 DISC1-AS1|DISC1OS|NCRNA00015 disrupted in schizophrenia 2 ncRNA 601-2 chr1 49809924 49810402 + 2 NA intron (NM_001323575, intron 2 of 12) MIRb|SINE|MIR 213791 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 236-372 chr8 139442153 139442319 + 2 NA Intergenic L1MDa|LINE|L1 260887 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 445-106 chr19 24354135 24354522 + 2 NA Intergenic ALR/Alpha|Satellite|centr -190881 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 404-175 chr2 144563377 144563592 + 2 NA intron (NR_110570, intron 1 of 2) intron (NR_110570, intron 1 of 2) -39040 NR_136320 105373656 Hs.734683 NR_136320 LOC105373656 - uncharacterized LOC105373656 ncRNA 215-205 chr3 134458869 134459025 + 2 NA Intergenic Intergenic 21120 NR_039951 100616281 NR_039951 ENSG00000284561 MIR4788 - microRNA 4788 ncRNA 184-91 chr2 74238343 74238501 + 2 NA intron (NM_133478, intron 21 of 30) L1M6|LINE|L1 39807 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 270-373 chr7 146711132 146711353 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -63029 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 335-372 chr3 191531939 191532212 + 2 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) 70912 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 317-58 chr10 77264120 77264317 + 2 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 86543 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 328-327 chr21 28556557 28556807 + 2 NA Intergenic L1PA10|LINE|L1 17364 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 808-48 chr6 146164305 146164820 + 2 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 135364 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 270-92 chr12 129049825 129050061 + 2 NA Intergenic Intergenic -59747 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 325-490 chr7 7327377 7327638 + 2 NA Intergenic Intergenic 72353 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 386-77 chr12 73586407 73586734 + 2 NA Intergenic L1MA6|LINE|L1 427380 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 420-108 chr18 7914407 7914707 + 2 NA intron (NM_002845, intron 4 of 30) MIR|SINE|MIR 347241 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 345-66 chr10 64118716 64119015 + 2 NA Intergenic Intergenic -596975 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 283-11 chr1 82692872 82693022 + 2 NA Intergenic Intergenic -210236 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 691-27 chr14 84756249 84756713 + 2 NA Intergenic Intergenic -515451 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 600-122 chr8 15060617 15061043 + 2 NA intron (NM_139167, intron 1 of 7) L1MEb|LINE|L1 177601 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 333-316 chr21 18736778 18736985 + 2 NA intron (NR_109925, intron 2 of 3) intron (NR_109925, intron 2 of 3) 22931 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 316-85 chr10 123821194 123821396 + 2 NA intron (NM_198148, intron 4 of 13) intron (NM_198148, intron 4 of 13) 70512 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 352-271 chr2 225604963 225605231 + 2 NA intron (NM_001371273, intron 5 of 7) intron (NM_001371273, intron 5 of 7) 204211 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 288-459 chr8 134919719 134919908 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 69878 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 417-104 chr16 78821386 78821746 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 721912 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 147-36 chr18 52710059 52710199 + 2 NA intron (NM_005215, intron 1 of 28) L1ME4a|LINE|L1 369932 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 325-163 chr14 46559750 46559959 + 2 NA Intergenic Intergenic 88495 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 409-202 chr3 106215433 106215761 + 2 NA Intergenic L3|LINE|CR1 -346196 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 288-112 chr14 42503510 42503701 + 2 NA Intergenic Intergenic 896749 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 266-221 chr20 57886188 57886378 + 2 NA Intergenic L1PB1|LINE|L1 -117621 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 314-68 chr10 67190070 67190314 + 2 NA intron (NM_001127384, intron 6 of 17) intron (NM_001127384, intron 6 of 17) 177926 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 263-59 chr10 89293722 89293952 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -8209 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 561-184 chr7 64072671 64073112 + 2 NA intron (NM_001159522, intron 3 of 3) AluJb|SINE|Alu 27457 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 454-212 chr3 122157815 122158127 + 2 NA Intergenic L1M4|LINE|L1 -25697 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 146-44 chr2 155794353 155794462 + 2 NA Intergenic Intergenic 460524 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 299-74 chr11 27636113 27636291 + 2 NA intron (NR_033314, intron 3 of 6) LTR8|LTR|ERV1 -1575 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 295-191 chr19 34588527 34588687 + 2 NA intron (NR_027620, intron 1 of 3) intron (NR_027620, intron 1 of 3) 5978 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 496-292 chr8 110076030 110076424 + 2 NA Intergenic Intergenic -100456 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 340-211 chr18 22914764 22915020 + 2 NA Intergenic Intergenic -18436 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 309-246 chr2 57220530 57220769 + 2 NA Intergenic L1M4|LINE|L1 -687002 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 228-136 chr17 73027503 73027683 + 2 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 65095 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 240-163 chr15 96101668 96101825 + 2 NA intron (NR_158193, intron 6 of 7) MLT1I|LTR|ERVL-MaLR 26095 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 666-123 chr9 105574022 105574418 + 2 NA 5' UTR (NM_001351499, exon 3 of 13) 5' UTR (NM_001351499, exon 3 of 13) 16089 NM_001351498 2218 Hs.55777 NM_006731 ENSG00000106692 FKTN CMD1X|FCMD|LGMD2M|LGMDR13|MDDGA4|MDDGB4|MDDGC4 fukutin protein-coding 273-396 chr6 124236481 124236686 + 2 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -46422 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 479-184 chr5 14514900 14515216 + 2 NA Intergenic L1MD1|LINE|L1 51075 NR_145815 109623458 NR_145815 SNORD170 - small nucleolar RNA, C/D box 170 snoRNA 385-204 chr20 68116 68480 + 2 NA Intergenic L2a|LINE|L2 -19374 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 320-298 chr2 238656679 238656913 + 2 NA Intergenic Intergenic -101297 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 164-119 chrUn_KI270438v1 58087 58196 + 2 NA NA Intergenic NA NA 525-19 chr1 241352435 241352783 + 2 NA intron (NM_001350116, intron 1 of 16) intron (NM_001350116, intron 1 of 16) 3217 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 719-11 chr11 4473756 4474279 + 2 NA Intergenic Intergenic -14862 NM_001005171 390036 Hs.553726 NM_001005171 ENSG00000196778 OR52K1 OR11-8 olfactory receptor family 52 subfamily K member 1 protein-coding 318-56 chr10 33628930 33629209 + 2 NA Intergenic Intergenic 143611 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 411-289 chr8 78657172 78657468 + 2 NA Intergenic Intergenic -8769 NM_001362969 51101 Hs.271876 NM_016010 ENSG00000104427 ZC2HC1A C8orf70|CGI-62|FAM164A zinc finger C2HC-type containing 1A protein-coding 239-130 chr17 55043034 55043244 + 2 NA intron (NM_178509, intron 10 of 17) intron (NM_178509, intron 10 of 17) -74354 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 241-55 chr10 122003082 122003275 + 2 NA intron (NM_206862, intron 1 of 22) AluSx1|SINE|Alu 14015 NM_206861 10579 Hs.501252 NM_006997 ENSG00000138162 TACC2 AZU-1|ECTACC transforming acidic coiled-coil containing protein 2 protein-coding 368-443 chr8 38653746 38654031 + 2 NA Intergenic HAL1|LINE|L1 -52631 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 338-540 chr8 85369452 85369671 + 2 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) 8552 NM_001291968 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 436-196 chr3 148682347 148682572 + 2 NA Intergenic Intergenic -15412 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 248-43 chr10 76250149 76250362 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 467494 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 247-90 chr12 65001372 65001536 + 2 NA Intergenic L1MCc|LINE|L1 -9163 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 545-72 chr14 68528814 68529166 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 99797 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 334-451 chr6 9067422 9067663 + 2 NA Intergenic Intergenic 415333 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 356-209 chr18 47678914 47679208 + 2 NA Intergenic Intergenic 251598 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 359-189 chr17 71497713 71497914 + 2 NA Intergenic L2a|LINE|L2 -295634 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 569-44 chr12 2607748 2608159 + 2 NA intron (NM_199460, intron 27 of 49).2 intron (NM_199460, intron 27 of 49).2 64267 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 292-431 chr8 84317241 84317434 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) -98147 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 266-443 chr9 25367457 25367674 + 2 NA Intergenic L1MB8|LINE|L1 311293 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 532-35 chr11 95946420 95946849 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -22427 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 308-471 chr7 88983430 88983699 + 2 NA intron (NM_181646, intron 1 of 3) MER33|DNA|hAT-Charlie -187827 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 273-381 chr6 23811335 23811538 + 2 NA Intergenic AluJr|SINE|Alu -314779 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 315-327 chr3 187601507 187601776 + 2 NA Intergenic Intergenic 68753 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 803-50 chr6 131148188 131148776 + 2 NA intron (NM_016377, intron 2 of 7) MIRc|SINE|MIR 13015 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 366-65 chr10 110361091 110361313 + 2 NA Intergenic Intergenic -56282 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 456-124 chr16 75039005 75039351 + 2 NA intron (NM_032268, intron 1 of 4) intron (NM_032268, intron 1 of 4) 40154 NM_032268 84937 Hs.427284 NM_032268 ENSG00000186187 ZNRF1 NIN283 zinc and ring finger 1 protein-coding 295-115 chr13 54340585 54340840 + 2 NA Intergenic Intergenic -28664 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 472-303 chr7 128803335 128803680 + 2 NA intron (NM_001367764, intron 5 of 17) AluJb|SINE|Alu 11539 NM_001367765 64753 Hs.521178 NM_022742 ENSG00000128596 CCDC136 NAG6 coiled-coil domain containing 136 protein-coding 239-253 chr3 112255808 112256006 + 2 NA intron (NM_001320531, intron 9 of 27).2 L1PREC2|LINE|L1 38309 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 210-260 chr7 33195325 33195478 + 2 NA intron (NM_198428, intron 5 of 22) intron (NM_198428, intron 5 of 22) 65837 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 183-127 chr6 28409578 28409702 + 2 NA Intergenic Intergenic -9893 NR_028077 9753 Hs.134816 NM_014724 ENSG00000158691 ZSCAN12 ZFP96|ZNF29K1|ZNF305|ZNF96|dJ29K1.2 zinc finger and SCAN domain containing 12 protein-coding 343-500 chr7 20694210 20694435 + 2 NA intron (NM_178559, intron 7 of 18) L1ME1|LINE|L1 46992 NM_001163993 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 498-148 chr2 230353276 230353708 + 2 NA intron (NM_001352892, intron 2 of 18) intron (NM_001352892, intron 2 of 18) 26321 NM_001352894 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 955-17 chr5 122368824 122369657 + 2 NA intron (NM_001308107, intron 1 of 8) intron (NM_001308107, intron 1 of 8) -21849 NM_001308108 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 195-195 chr5 62329789 62329903 + 2 NA intron (NM_001243952, intron 2 of 20) intron (NM_001243952, intron 2 of 20) 23684 NM_001243952 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 232-368 chr8 52304999 52305180 + 2 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) -50597 NM_001352850 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 281-199 chr2 34205096 34205266 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 137955 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 308-91 chr11 114525972 114526216 + 2 NA intron (NM_152315, intron 4 of 5) MLT1D|LTR|ERVL-MaLR 33787 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 243-478 chr9 90146772 90146927 + 2 NA Intergenic L1MC2|LINE|L1 -105350 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 463-183 chr3 50681440 50681864 + 2 NA intron (NM_004947, intron 1 of 52) intron (NM_004947, intron 1 of 52) 6572 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 206-50 chr11 93429935 93430089 + 2 NA intron (NM_181645, intron 13 of 13) L2|LINE|L2 99295 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 309-534 chr8 63779665 63779917 + 2 NA non-coding (NR_038875, exon 2 of 3) non-coding (NR_038875, exon 2 of 3) 10361 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 318-110 chr11 92754680 92754928 + 2 NA intron (NM_001008781, intron 3 of 24) AluSc|SINE|Alu 160824 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 365-420 chr9 11111088 11111319 + 2 NA Intergenic L1M1|LINE|L1 497997 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 326-551 chr8 126589077 126589253 + 2 NA Intergenic Intergenic -30687 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 383-106 chr14 46907589 46907899 + 2 NA intron (NM_001113498, intron 10 of 16) L2a|LINE|L2 -255963 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 471-208 chr5 75219995 75220311 + 2 NA intron (NM_001164443, intron 3 of 24) L1PREC2|LINE|L1 16725 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 383-150 chr17 6809975 6810222 + 2 NA intron (NM_053285, intron 6 of 7) L1MC2|LINE|L1 21631 NM_053285 83659 Hs.462108 NM_053285 ENSG00000167858 TEKT1 - tektin 1 protein-coding 345-426 chr5 92340552 92340793 + 2 NA Intergenic L1M4c|LINE|L1 -957355 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 203-88 chr17 82164837 82164977 + 2 NA intron (NM_001367828, intron 10 of 16) L1M5|LINE|L1 47935 NM_001316321 284001 Hs.631724 NM_152675 ENSG00000176155 CCDC57 - coiled-coil domain containing 57 protein-coding 282-285 chr3 6351162 6351419 + 2 NA Intergenic L2a|LINE|L2 454159 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 301-131 chr15 46977907 46978098 + 2 NA Intergenic L1P5|LINE|L1 -206087 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 770-62 chr5 165565830 165566429 + 2 NA Intergenic Intergenic 1095850 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 141-49 chr21 34027624 34027701 + 2 NA Intergenic L1MA9|LINE|L1 -45916 NM_032476 64968 Hs.302742 NM_032476 ENSG00000243927 MRPS6 C21orf101|MRP-S6|RPMS6|S6mt mitochondrial ribosomal protein S6 protein-coding 350-32 chr1 216291220 216291421 + 2 NA intron (NM_206933, intron 10 of 71) L2c|LINE|L2 132076 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 684-32 chr13 86106686 86107254 + 2 NA Intergenic L1MA8|LINE|L1 -307551 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 597-48 chr14 62390174 62390725 + 2 NA Intergenic AluSq2|SINE|Alu -250476 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 287-408 chr8 92138730 92138997 + 2 NA Intergenic Intergenic -35478 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 207-262 chr6 153705222 153705380 + 2 NA Intergenic L1MC3|LINE|L1 -305195 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 162-119 chr7 27792227 27792333 + 2 NA intron (NM_001362794, intron 9 of 16) intron (NM_001362794, intron 9 of 16) 52185 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 417-88 chr14 85978898 85979161 + 2 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 44351 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 261-347 chr7 29296417 29296578 + 2 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -87527 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 194-66 chr15 68970589 68970749 + 2 NA intron (NM_001184780, intron 1 of 15) MIR3|SINE|MIR 40144 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 669-88 chr5 29936308 29936660 + 2 NA Intergenic AluSz|SINE|Alu 55924 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 186-101 chr22 22239399 22239576 + 2 NA Intergenic AluJb|SINE|Alu -5299 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 253-97 chr12 18539376 18539553 + 2 NA intron (NM_001288774, intron 25 of 32) intron (NM_001288774, intron 25 of 32) 198045 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 743-61 chr4 58742294 58742868 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -206253 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 133-75 chr7 53585849 53585940 + 2 NA Intergenic Intergenic 226037 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 280-72 chr11 32085086 32085334 + 2 NA Intergenic Intergenic -5864 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 380-258 chr3 145994818 145995184 + 2 NA Intergenic Intergenic 74184 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 317-247 chr2 126318009 126318241 + 2 NA Intergenic LTR8B|LTR|ERV1 -200140 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 277-437 chr8 140013543 140013695 + 2 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 86916 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 463-102 chr15 94560221 94560664 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 204512 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 388-56 chr10 120324769 120325046 + 2 NA Intergenic L1ME3Cz|LINE|L1 30316 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 221-13 chr1 104984573 104984734 + 2 NA Intergenic L1MA4|LINE|L1 634282 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 216-300 chr6 49053581 49053741 + 2 NA Intergenic L1PA15|LINE|L1 409592 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 320-157 chr14 72628016 72628250 + 2 NA intron (NM_001280542, intron 9 of 10) L1MC4a|LINE|L1 111313 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 242-420 chr8 140411595 140411818 + 2 NA intron (NM_001321646, intron 4 of 21) L1MC4|LINE|L1 46038 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 356-65 chr10 105631590 105631939 + 2 NA Intergenic L1PA10|LINE|L1 188569 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 402-103 chr16 22985775 22986173 + 2 NA Intergenic Intergenic 163296 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 258-287 chr4 55660686 55660874 + 2 NA Intergenic Intergenic -23987 NR_120489 10874 Hs.418367 NM_006681 ENSG00000109255 NMU - neuromedin U protein-coding 258-262 chr3 80055745 80055979 + 2 NA Intergenic Intergenic -287864 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 243-297 chr3 110813129 110813306 + 2 NA Intergenic Intergenic 256742 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 491-120 chr2 75807077 75807389 + 2 NA Intergenic MER33|DNA|hAT-Charlie -96318 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 193-59 chr14 52558826 52558927 + 2 NA intron (NM_001353361, intron 1 of 7) L1ME1|LINE|L1 6040 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 285-268 chr3 82092766 82092951 + 2 NA intron (NR_147146, intron 1 of 8) L1PA16|LINE|L1 106716 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 364-323 chr4 178712076 178712385 + 2 NA Intergenic Intergenic -804294 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 402-11 chr1 97683440 97683730 + 2 NA intron (NM_000110, intron 7 of 22) intron (NM_000110, intron 7 of 22) -113336 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 329-41 chr1 248113297 248113553 + 2 NA Intergenic L1ME3B|LINE|L1 -8711 NR_002141 388762 Hs.528509 NR_002141 OR2M1P JCG10|OR2M1|OST037 olfactory receptor family 2 subfamily M member 1 pseudogene pseudo 240-215 chr2 73374234 73374384 + 2 NA Intergenic L2a|LINE|L2 -11449 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 407-323 chr8 87338649 87338991 + 2 NA intron (NM_173538, intron 8 of 10) L1MCa|LINE|L1 472405 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 349-442 chr6 50326621 50326806 + 2 NA Intergenic Intergenic -276784 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 550-79 chr14 101016360 101016774 + 2 NA Intergenic Intergenic -5499 NR_029871 494328 NR_029871 ENSG00000199088 MIR379 MIRN379|hsa-mir-379|mir-379 microRNA 379 ncRNA 382-335 chr5 101759260 101759532 + 2 NA Intergenic HERVL18-int|LTR|ERVL 536888 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 212-196 chr22 25451860 25451998 + 2 NA intron (NR_033734, intron 1 of 4) L1MA6|LINE|L1 -3717 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 750-9 chr10 33990185 33990622 + 2 NA Intergenic LTR39|LTR|ERV1 -217723 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 250-408 chr7 121872005 121872208 + 2 NA Intergenic Intergenic -1055 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 291-168 chr17 12840177 12840422 + 2 NA intron (NM_001321164, intron 1 of 20) intron (NM_001321164, intron 1 of 20) -50015 NR_104607 100128006 Hs.567641 NR_104607 ENSG00000265489 LOC100128006 - uncharacterized LOC100128006 ncRNA 397-79 chr14 36730470 36730756 + 2 NA intron (NM_001171170, intron 4 of 10) intron (NM_001171170, intron 4 of 10) 73045 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 322-408 chr5 8307317 8307586 + 2 NA Intergenic L1M1|LINE|L1 150113 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 391-353 chr8 83809096 83809319 + 2 NA Intergenic Intergenic -373580 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 378-325 chr4 156321257 156321461 + 2 NA Intergenic L2a|LINE|L2 -367493 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 301-79 chr11 113402965 113403245 + 2 NA Intergenic Intergenic 15326 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 309-200 chr17 34840870 34841146 + 2 NA Intergenic Intergenic 120452 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 350-325 chr3 120469732 120470007 + 2 NA Intergenic MER41B|LTR|ERV1 -18877 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 528-208 chr5 141378358 141378706 + 2 NA intron (NM_018919, intron 1 of 3) intron (NM_018919, intron 1 of 3) -4210 NM_032087 56108 Hs.368160 NM_018920 ENSG00000253537 PCDHGA7 PCDH-GAMMA-A7 protocadherin gamma subfamily A, 7 protein-coding 399-25 chr10 13145083 13145416 + 2 NA Intergenic L1MC2|LINE|L1 -16309 NM_182751 55388 Hs.198363 NM_018518 ENSG00000065328 MCM10 CNA43|DNA43|PRO2249 minichromosome maintenance 10 replication initiation factor protein-coding 615-86 chr3 115277923 115278324 + 2 NA Intergenic L1MA2|LINE|L1 -130835 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 342-217 chr2 7108238 7108571 + 2 NA Intergenic Intergenic -30524 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 668-97 chr7 56720307 56720787 + 2 NA Intergenic L1MC4a|LINE|L1 92189 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 320-530 chr8 20464206 20464368 + 2 NA Intergenic Intergenic 150639 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 317-151 chr14 63843771 63844034 + 2 NA Intergenic L1MC1|LINE|L1 -9063 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 295-49 chr10 75720294 75720504 + 2 NA intron (NR_132791, intron 1 of 2) MIR3|SINE|MIR 7944 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 555-4 chr1 82689141 82689610 + 2 NA Intergenic LTR27E|LTR|ERV1 -213808 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 218-81 chr13 38478226 38478436 + 2 NA Intergenic Intergenic -89393 NR_046999 100874147 Hs.555371 NR_046999 LINC00366 - long intergenic non-protein coding RNA 366 ncRNA 531-190 chr5 22504854 22505263 + 2 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -291208 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 387-136 chr16 82595000 82595281 + 2 NA Intergenic Intergenic -31829 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 287-362 chr6 120370412 120370586 + 2 NA Intergenic L1MB1|LINE|L1 355320 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 459-12 chr1 104186591 104186951 + 2 NA Intergenic Intergenic 113748 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 212-210 chr3 74712404 74712562 + 2 NA Intergenic L1ME2|LINE|L1 -191343 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 350-247 chr2 147252756 147253065 + 2 NA Intergenic Intergenic -591607 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 363-86 chr11 84710475 84710752 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 10329 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 237-77 chr12 59236490 59236686 + 2 NA Intergenic L1ME3D|LINE|L1 -316050 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 512-178 chr3 176702517 176703009 + 2 NA Intergenic Tigger6b|DNA|TcMar-Tigger -67231 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 250-321 chr4 121523840 121524000 + 2 NA Intergenic Intergenic -142902 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 435-116 chr2 32929797 32930159 + 2 NA TTS (NR_027098) TTS (NR_027098) 2851 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 393-60 chr11 101508114 101508399 + 2 NA intron (NM_004621, intron 1 of 12) HAL1|LINE|L1 11649 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 272-382 chr6 52200841 52201032 + 2 NA Intergenic HAL1|LINE|L1 14561 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 269-368 chr7 3409351 3409533 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 108190 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 443-107 chr15 77783444 77783719 + 2 NA intron (NM_001301186, intron 2 of 5) MIRc|SINE|MIR 3468 NM_001301195 84894 Hs.656765 NM_032808 ENSG00000169783 LINGO1 LERN1|LRRN6A|MRT64|UNQ201 leucine rich repeat and Ig domain containing 1 protein-coding 754-29 chr17 26808781 26809338 + 2 NA Intergenic Intergenic 280182 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 278-261 chr3 13782998 13783201 + 2 NA Intergenic L1ME4b|LINE|L1 96972 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 904-4 chr10 75265572 75266386 + 2 NA Intergenic Intergenic -30022 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 332-264 chr2 126990749 126991021 + 2 NA Intergenic MER34A|LTR|ERV1 91180 NM_001320634 274 Hs.193163 NM_004305 ENSG00000136717 BIN1 AMPH2|AMPHL|CNM2|SH3P9 bridging integrator 1 protein-coding 411-296 chr8 130613180 130613515 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -169673 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 417-187 chr3 170219125 170219536 + 2 NA Intergenic L1MB7|LINE|L1 -3094 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 426-118 chr19 42613259 42613593 + 2 NA intron (NR_073180, intron 2 of 2) LTR49-int|LTR|ERV1 -18502 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 506-51 chr11 28435335 28435781 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 41990 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 239-110 chr14 71306503 71306683 + 2 NA Intergenic Intergenic -13883 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 557-137 chr3 77802728 77803129 + 2 NA Intergenic Intergenic 246035 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 340-126 chr13 29976212 29976392 + 2 NA Intergenic L1M5|LINE|L1 39771 NR_033889 440131 Hs.132371 NM_001010918 LINC00544 - long intergenic non-protein coding RNA 544 ncRNA 370-69 chr10 115605462 115605748 + 2 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 512240 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 468-115 chr17 57734460 57734763 + 2 NA Intergenic AluSx|SINE|Alu 10688 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 572-89 chr2 83915917 83916300 + 2 NA Intergenic L1MB8|LINE|L1 -374574 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 353-288 chr20 44022748 44022970 + 2 NA intron (NM_001098797, intron 3 of 8) MamTip3|DNA|hAT-Tip100 76963 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 475-76 chr14 45467467 45467801 + 2 NA Intergenic MER68|LTR|ERVL -214432 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 343-293 chr20 11040196 11040394 + 2 NA Intergenic L2a|LINE|L2 13751 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 464-237 chr7 33597199 33597471 + 2 NA intron (NR_145411, intron 22 of 23) intron (NR_145411, intron 22 of 23) -307580 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 305-21 chr1 100670658 100670893 + 2 NA Intergenic L2a|LINE|L2 -23771 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 269-407 chr8 90256334 90256544 + 2 NA intron (NR_051989, intron 2 of 3) MER20|DNA|hAT-Charlie 34951 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 330-9 chr1 41140788 41140998 + 2 NA intron (NM_001172218, intron 7 of 15) L1MC5|LINE|L1 20539 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 321-148 chr12 125830836 125831112 + 2 NA Intergenic Intergenic 152400 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 516-102 chr17 62318424 62318932 + 2 NA Intergenic L2c|LINE|L2 -43023 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 343-122 chr13 38810970 38811197 + 2 NA intron (NM_207361, intron 6 of 23) L1M1|LINE|L1 16508 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 518-84 chr14 68996584 68996896 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 17058 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 211-103 chr16 62416190 62416395 + 2 NA Intergenic L1MA4A|LINE|L1 -379854 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 228-203 chr21 35153543 35153711 + 2 NA Intergenic MIR|SINE|MIR -104329 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 206-75 chr15 60208066 60208239 + 2 NA Intergenic Intergenic 189834 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 510-239 chr5 178987994 178988289 + 2 NA intron (NM_000843, intron 7 of 10) L1MB3|LINE|L1 7179 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 197-104 chr2 145029341 145029489 + 2 NA intron (NR_033870, intron 3 of 4) intron (NR_033870, intron 3 of 4) 361448 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 284-452 chrX 46286508 46286719 + 2 NA Intergenic L1MA8|LINE|L1 41061 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 289-248 chr2 176204609 176204788 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -15740 NR_033979 401022 Hs.98661 NR_033979 ENSG00000224189 HAGLR HOXD-AS1|MIR7704HG|Mdgt HOXD antisense growth-associated long non-coding RNA ncRNA 207-312 chr9 36368876 36369027 + 2 NA intron (NM_194328, intron 4 of 11) intron (NM_194328, intron 4 of 11) 31318 NM_194329 152006 Hs.333503 NM_022781 ENSG00000137075 RNF38 - ring finger protein 38 protein-coding 204-17 chr1 228872471 228872600 + 2 NA Intergenic Intergenic 137056 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 499-109 chr2 16517460 16517835 + 2 NA Intergenic Intergenic 148187 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 549-88 chr18 42157154 42157508 + 2 NA Intergenic Intergenic -29337 NR_046456 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 187-184 chr8 141850782 141850941 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -64548 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 282-228 chr2 139582388 139582601 + 2 NA Intergenic L1ME1|LINE|L1 685170 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 462-97 chr16 9526796 9527208 + 2 NA Intergenic Intergenic -71497 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 581-147 chr5 179389947 179390324 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -44674 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 300-84 chr12 23512117 23512331 + 2 NA Intergenic L1MB8|LINE|L1 72362 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 253-431 chr9 80528575 80528730 + 2 NA Intergenic L1PA10|LINE|L1 553629 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 220-76 chr11 115000251 115000389 + 2 NA Intergenic AluJr4|SINE|Alu 321793 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 373-343 chr5 159387864 159388171 + 2 NA Intergenic L1PB4|LINE|L1 56499 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 250-441 chr8 120694666 120694867 + 2 NA intron (NM_021021, intron 1 of 6) L1ME4b|LINE|L1 -66487 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 259-122 chr14 67208467 67208657 + 2 NA intron (NM_173526, intron 6 of 8) intron (NM_173526, intron 6 of 8) 19122 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 709-62 chr3 161050258 161050754 + 2 NA intron (NR_134243, intron 4 of 5) intron (NR_134243, intron 4 of 5) 54226 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 349-317 chr22 47783786 47783991 + 2 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 152214 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 142-2 chr1 87521255 87521348 + 2 NA Intergenic L1MB5|LINE|L1 -149646 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 519-13 chr1 181614390 181614811 + 2 NA intron (NM_001205293, intron 6 of 47) Tigger2|DNA|TcMar-Tigger 131083 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 669-74 chr3 137178397 137178953 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 220692 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 548-75 chr14 65775214 65775693 + 2 NA Intergenic MER110A|LTR|ERV1 304351 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 956-10 chr14 72403099 72403840 + 2 NA intron (NM_001370288, intron 3 of 16) L1MA5|LINE|L1 -113351 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 336-75 chr10 104045283 104045522 + 2 NA intron (NM_000494, intron 33 of 55) intron (NM_000494, intron 33 of 55) 2784 NR_030760 100126326 NR_030760 ENSG00000283788 MIR936 MIRN936|hsa-mir-936 microRNA 936 ncRNA 330-198 chr16 83422026 83422263 + 2 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -86202 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 233-202 chr20 2319918 2320113 + 2 NA intron (NM_003245, intron 7 of 12) intron (NM_003245, intron 7 of 12) 24014 NM_003245 7053 Hs.2022 NM_003245 ENSG00000125780 TGM3 TGE|UHS2 transglutaminase 3 protein-coding 351-351 chr4 78226958 78227167 + 2 NA intron (NM_001166133, intron 2 of 41) intron (NM_001166133, intron 2 of 41) -61923 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 499-185 chr4 81942036 81942414 + 2 NA Intergenic L1MA5|LINE|L1 431766 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 624-52 chr18 885590 886088 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -19032 NM_001099733 116 Hs.531719 NM_001117 ENSG00000141433 ADCYAP1 PACAP adenylate cyclase activating polypeptide 1 protein-coding 243-370 chr5 128443868 128444028 + 2 NA intron (NM_001999, intron 7 of 64) intron (NM_001999, intron 7 of 64) 94297 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 528-183 chr4 100514623 100515084 + 2 NA intron (NM_001159694, intron 1 of 10) intron (NM_001159694, intron 1 of 10) 3169 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 381-375 chr8 40237896 40238200 + 2 NA Intergenic Intergenic 84566 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 188-164 chr5 44661713 44661872 + 2 NA Intergenic Intergenic 147001 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 482-95 chr17 14735311 14735718 + 2 NA Intergenic L1M6|LINE|L1 -279291 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 311-425 chr5 153434223 153434426 + 2 NA Intergenic Intergenic -56200 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 284-376 chr7 39428119 39428386 + 2 NA intron (NM_001370959, intron 6 of 9) intron (NM_001370959, intron 6 of 9) -21906 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 295-97 chr12 41000065 41000280 + 2 NA intron (NM_001843, intron 17 of 23) intron (NM_001843, intron 17 of 23) 91815 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 405-305 chr7 95016542 95016925 + 2 NA intron (NM_017650, intron 2 of 15) L1ME1|LINE|L1 106835 NM_001166161 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 282 chr1 3062071 3062306 + 2 NA non-coding (NR_015440, exon 3 of 6) non-coding (NR_015440, exon 3 of 6) 5537 NR_015440 440556 Hs.531041 NM_198543 ENSG00000177133 PRDM16-DT LINC00982|lnc-dPrdm16 PRDM16 divergent transcript ncRNA 387-36 chr10 52958698 52958978 + 2 NA Intergenic Intergenic -187138 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 337-42 chr10 19033247 19033527 + 2 NA Intergenic L3|LINE|CR1 -15414 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 223-329 chr7 145625204 145625392 + 2 NA Intergenic Intergenic -789245 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 196-184 chr4 56598743 56598867 + 2 NA intron (NM_001256475, intron 7 of 8) THE1B|LTR|ERVL-MaLR 57717 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 192-43 chr11 111891727 111891858 + 2 NA Intergenic L1MB4|LINE|L1 12251 NM_022761 64776 Hs.17546 NM_022761 ENSG00000137720 C11orf1 - chromosome 11 open reading frame 1 protein-coding 178-39 chr12 103918099 103918242 + 2 NA intron (NR_027249, intron 1 of 15) L1MEc|LINE|L1 12041 NR_027249 253724 Hs.506549 NR_027249 ENSG00000214198 TTC41P GNN|GNNP tetratricopeptide repeat domain 41, pseudogene pseudo 478-229 chr5 12995567 12995949 + 2 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 37128 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 498-40 chr10 99164343 99164766 + 2 NA intron (NM_021828, intron 2 of 11) L1MC4|LINE|L1 71321 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 301-92 chr12 38811622 38811838 + 2 NA intron (NM_153634, intron 6 of 19) AluJo|SINE|Alu 93861 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 154-79 chr4 43756716 43756819 + 2 NA Intergenic L2c|LINE|L2 -260094 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 478-242 chr5 109956375 109956796 + 2 NA Intergenic Intergenic 73403 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 288 chr1 3108288 3108456 + 2 NA intron (NM_022114, intron 1 of 16) intron (NM_022114, intron 1 of 16) -19603 NR_036215 100422968 NR_036215 ENSG00000283572 MIR4251 - microRNA 4251 ncRNA 530-238 chr7 90191561 90192037 + 2 NA intron (NR_110029, intron 2 of 2) HERV4_I-int|LTR|ERV1 19836 NR_110029 100874100 Hs.573339 NR_110029 ENSG00000227646 STEAP2-AS1 - STEAP2 antisense RNA 1 ncRNA 288-262 chr3 68600850 68601009 + 2 NA Intergenic AluJb|SINE|Alu 100292 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 242-124 chr16 31519798 31519966 + 2 NA Intergenic Intergenic -8018 NM_016633 51327 Hs.274309 NM_016633 ENSG00000169877 AHSP EDRF|ERAF alpha hemoglobin stabilizing protein protein-coding 307-424 chr6 53848496 53848713 + 2 NA intron (NM_018214, intron 2 of 13) intron (NM_018214, intron 2 of 13) 53599 NM_018214 55227 Hs.606493 NM_018214 ENSG00000137269 LRRC1 LANO|dJ523E19.1 leucine rich repeat containing 1 protein-coding 167-73 chr20 40486275 40486413 + 2 NA Intergenic Intergenic 202892 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 263-395 chr7 49919846 49920061 + 2 NA 3' UTR (NM_198570, exon 4 of 4) 3' UTR (NM_198570, exon 4 of 4) 144620 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 270-19 chr1 194729387 194729596 + 2 NA Intergenic Intergenic 1359224 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 264-43 chr10 45041994 45042201 + 2 NA Intergenic Intergenic 41174 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 394-54 chr10 125420565 125420838 + 2 NA Intergenic L1MD3|LINE|L1 -153670 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 407-267 chr5 167377465 167377786 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -196034 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 185-149 chr4 76622760 76622900 + 2 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 47279 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 729-67 chr6 48665771 48666330 + 2 NA Intergenic Intergenic -597361 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 340-350 chr3 5479364 5479629 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -229241 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 413-48 chr11 14701964 14702253 + 2 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 58304 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 302-308 chr3 194067555 194067809 + 2 NA intron (NR_136181, intron 1 of 3) L1MA2|LINE|L1 1847 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 575-107 chr21 30830276 30830666 + 2 NA promoter-TSS (NM_181606) promoter-TSS (NM_181606) -712 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 328-425 chr4 162819901 162820176 + 2 NA Intergenic Intergenic 273590 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 499-80 chr16 86164835 86165136 + 2 NA Intergenic Intergenic -31196 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 608-60 chr18 60236760 60237187 + 2 NA Intergenic L2a|LINE|L2 135802 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 421-265 chr6 133527437 133527797 + 2 NA intron (NM_172103, intron 18 of 18) MER33|DNA|hAT-Charlie 286118 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 359-57 chr10 51594721 51594938 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 104766 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 393-237 chr4 39173130 39173371 + 2 NA Intergenic L1MC1|LINE|L1 -9279 NM_025132 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 433-219 chr5 35898463 35898845 + 2 NA Intergenic Intergenic 39968 NM_001042625 133690 Hs.55150 NM_144647 ENSG00000152611 CAPSL - calcyphosine like protein-coding 266-32 chr10 16904199 16904429 + 2 NA intron (NM_001081, intron 50 of 66) intron (NM_001081, intron 50 of 66) -86860 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 252-62 chr11 24914706 24914951 + 2 NA intron (NM_001009909, intron 7 of 11) intron (NM_001009909, intron 7 of 11) 417775 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 378-425 chr8 24793137 24793374 + 2 NA Intergenic Intergenic -120506 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 271-68 chr11 33208829 33209012 + 2 NA Intergenic L2b|LINE|L2 47263 NR_034027 338739 Hs.423476 NR_034027 ENSG00000247151 CSTF3-DT CSTF3-AS1 CSTF3 divergent transcript ncRNA 236-94 chr12 94512651 94512801 + 2 NA Intergenic MER21B|LTR|ERVL -49063 NR_049885 100847031 NR_049885 ENSG00000266099 MIR5700 - microRNA 5700 ncRNA 174-116 chr5 124925896 124926061 + 2 NA Intergenic L1ME3A|LINE|L1 -110853 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 323-318 chr3 10477680 10477959 + 2 NA intron (NM_001353564, intron 2 of 20) L1MB3|LINE|L1 27765 NM_001363862 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 574-64 chr19 36823126 36823556 + 2 NA exon (NM_001242802, exon 4 of 5) exon (NM_001242802, exon 4 of 5) 14686 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 309-513 chr7 62956978 62957228 + 2 NA Intergenic ALR/Alpha|Satellite|centr 346953 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 511-219 chr6 12649822 12650174 + 2 NA Intergenic HAL1|LINE|L1 -64594 NR_149140 101928309 Hs.639414 NR_149140 ENSG00000234015 LINC02530 - long intergenic non-protein coding RNA 2530 ncRNA 570-196 chr8 71080977 71081396 + 2 NA Intergenic L1ME4c|LINE|L1 275520 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 202-5 chr1 80842877 80843038 + 2 NA Intergenic Intergenic 201670 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 186-21 chr11 79187055 79187202 + 2 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 214981 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 404-349 chrX 75579112 75579409 + 2 NA Intergenic L1MA1|LINE|L1 -55758 NM_001146256 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 577-153 chr5 111640058 111640451 + 2 NA intron (NR_040093, intron 1 of 6) THE1C-int|LTR|ERVL-MaLR 115997 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 350-39 chr10 34199347 34199559 + 2 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -426773 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 344-516 chr9 28469823 28470037 + 2 NA intron (NM_152570, intron 3 of 6) L1M4c|LINE|L1 249375 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 374-165 chr19 44319056 44319273 + 2 NA Intergenic L1MA4|LINE|L1 -14139 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 533-215 chr7 35473251 35473748 + 2 NA Intergenic L1M4|LINE|L1 159644 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 547-135 chr3 65814426 65814864 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -79171 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 279-21 chr1 189799428 189799597 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 676498 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 702-97 chr8 58284200 58284732 + 2 NA Intergenic Intergenic -12365 NR_105005 101929528 Hs.563551 NR_105005 ENSG00000253281 LOC101929528 - uncharacterized LOC101929528 ncRNA 269-313 chr5 45866481 45866654 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -170187 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 216-276 chr5 56764026 56764163 + 2 NA Intergenic Intergenic 8777 NM_001365184 105378979 NM_001365184 LOC105378979 - growth/differentiation factor 3 protein-coding 396-309 chr6 54659740 54660025 + 2 NA Intergenic Intergenic -186889 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 438-90 chr17 22233612 22233982 + 2 NA Intergenic ALR/Alpha|Satellite|centr 30802 NR_144546 23666 Hs.499916 NR_144546 ENSG00000263563 UBBP4 - ubiquitin B pseudogene 4 pseudo 856-41 chr5 161255030 161255679 + 2 NA Intergenic Intergenic 292770 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 419-234 chr5 98002765 98003113 + 2 NA Intergenic Intergenic 158300 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 203-125 chr2 158296678 158296782 + 2 NA intron (NM_138803, intron 9 of 13) intron (NM_138803, intron 9 of 13) 130080 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 180-92 chr2 237639268 237639422 + 2 NA intron (NM_001137550, intron 1 of 23) intron (NM_001137550, intron 1 of 23) 11758 NM_001137550 9208 Hs.471779 NM_004735 ENSG00000124831 LRRFIP1 FLAP-1|FLAP1|FLIIAP1|GCF-2|GCF2|HUFI-1|TRIP LRR binding FLII interacting protein 1 protein-coding 329-210 chr16 86473605 86473825 + 2 NA TTS (NR_033925) TTS (NR_033925) 35145 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 354-186 chr18 50963277 50963504 + 2 NA Intergenic LTR3A|LTR|ERVK -4650 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 585-108 chr4 62062237 62062636 + 2 NA intron (NM_001371343, intron 23 of 23) L1MD2|LINE|L1 99329 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 436-43 chr10 129342076 129342375 + 2 NA Intergenic AluJr|SINE|Alu -125016 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 210-253 chr6 127078791 127078963 + 2 NA Intergenic L2|LINE|L2 -39794 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 337-377 chr3 191888415 191888671 + 2 NA Intergenic Intergenic -350087 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 479-215 chr6 91248711 91249173 + 2 NA Intergenic Intergenic -272718 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 641-103 chr7 124477979 124478536 + 2 NA Intergenic AluSz|SINE|Alu -126161 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 385-356 chr7 46363025 46363377 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 333921 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 343-89 chr11 134484207 134484454 + 2 NA intron (NR_033852, intron 5 of 5) L2|LINE|L2 47848 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 243-388 chr6 65613458 65613688 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -33769 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 307-342 chr4 83804878 83805119 + 2 NA Intergenic L1MA9|LINE|L1 268890 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 183-81 chr2 175963682 175963825 + 2 NA intron (NR_130941, intron 9 of 14) intron (NR_130941, intron 9 of 14) 38514 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 401-190 chr20 53321508 53321884 + 2 NA intron (NM_173485, intron 2 of 2) AluSg|SINE|Alu 136413 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 269-183 chr2 34253635 34253889 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 186536 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 447-51 chr12 1984290 1984727 + 2 NA intron (NM_152640, intron 3 of 8) L1MEf|LINE|L1 19949 NM_152640 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 400-109 chr15 51590133 51590492 + 2 NA intron (NM_001174116, intron 1 of 42) intron (NM_001174116, intron 1 of 42) 32459 NM_001174117 23312 Hs.511386 NM_015263 ENSG00000104093 DMXL2 DFNA71|PEPNS|RC3 Dmx like 2 protein-coding 337-322 chr21 24206069 24206307 + 2 NA Intergenic Intergenic 115189 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 294-123 chr14 67428723 67428942 + 2 NA Intergenic Intergenic 13098 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 325-169 chr14 63907656 63907978 + 2 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 54813 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 306-327 chr3 140609158 140609412 + 2 NA Intergenic L1P4e|LINE|L1 -68779 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 651-64 chr2 116523240 116523856 + 2 NA Intergenic L1PREC2|LINE|L1 1179733 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 169-20 chr11 69359529 69359696 + 2 NA Intergenic Intergenic 65457 NM_138768 26579 Hs.523848 NM_138768 ENSG00000172927 MYEOV OCIM myeloma overexpressed protein-coding 469-282 chr8 81822190 81822490 + 2 NA intron (NM_001348189, intron 6 of 9) L2a|LINE|L2 19845 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 634-85 chr2 213866892 213867328 + 2 NA intron (NR_047660, intron 10 of 14) intron (NR_047660, intron 10 of 14) 109043 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 416-182 chr2 137700804 137701127 + 2 NA Intergenic Intergenic 226967 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 421-283 chr7 50643681 50644051 + 2 NA intron (NM_001350816, intron 6 of 17) L1MC4|LINE|L1 61435 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 400-214 chr3 59848379 59848613 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -189999 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 199-91 chr19 28811002 28811179 + 2 NA Intergenic Intergenic -83396 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 243-179 chr18 38818023 38818171 + 2 NA Intergenic L1MC3|LINE|L1 804078 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 224-39 chr10 95256096 95256302 + 2 NA intron (NM_020992, intron 4 of 6) L1MB2|LINE|L1 34804 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 303-27 chr1 239538892 239539077 + 2 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) -90089 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 592-90 chr2 137548740 137549183 + 2 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 378971 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 168-14 chr10 83421008 83421168 + 2 NA Intergenic L1ME3B|LINE|L1 256001 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 343-393 chr4 70012356 70012543 + 2 NA Intergenic L1PB1|LINE|L1 -16010 NM_000200 3347 Hs.654442 NM_000200 ENSG00000205649 HTN3 HIS2|HTN2|HTN5|PB histatin 3 protein-coding 641-74 chr3 3376257 3376860 + 2 NA Intergenic Intergenic -196841 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 131-81 chr9 92209358 92209477 + 2 NA TTS (NM_002161) TTS (NM_002161) -18261 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 390-246 chr3 99558648 99558869 + 2 NA Intergenic Intergenic -79836 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 228-180 chr2 149114681 149114867 + 2 NA intron (NM_001317004, intron 1 of 6) intron (NM_001317004, intron 1 of 6) -3400 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 354-450 chr8 28485932 28486178 + 2 NA intron (NM_001258211, intron 1 of 7) AluSx1|SINE|Alu 4174 NM_172366 157574 Hs.741522 NM_172366 ENSG00000214050 FBXO16 FBX16 F-box protein 16 protein-coding 312-177 chr16 54926623 54926803 + 2 NA intron (NR_110453, intron 1 of 5) intron (NR_110453, intron 1 of 5) 2065 NR_110454 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 302-374 chr6 40323521 40323787 + 2 NA Intergenic Intergenic 32352 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 249-46 chr10 44101434 44101600 + 2 NA Intergenic MER68|LTR|ERVL 189115 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 248-169 chr2 7891612 7891798 + 2 NA intron (NR_110256, intron 3 of 5) intron (NR_110256, intron 3 of 5) 7950 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 354-348 chr4 129768648 129768860 + 2 NA intron (NR_110753, intron 1 of 4) intron (NR_110753, intron 1 of 4) 2724 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 261-269 chr4 24619952 24620147 + 2 NA Intergenic L1MA9|LINE|L1 -35495 NM_001358 1665 Hs.696074 NM_001358 ENSG00000109606 DHX15 DBP1|DDX15|HRH2|PRP43|PRPF43|PrPp43p DEAH-box helicase 15 protein-coding 221-301 chr8 98776462 98776649 + 2 NA intron (NM_001256312, intron 3 of 12) Tigger4|DNA|TcMar-Tigger 49116 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 506-33 chr10 30871022 30871471 + 2 NA intron (NM_001143771, intron 5 of 7) intron (NM_001143771, intron 5 of 7) 128271 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 255-379 chr7 33975541 33975670 + 2 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 70066 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 229-197 chr2 122944020 122944223 + 2 NA Intergenic L1MDa|LINE|L1 129360 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 643-9 chr10 30771268 30771703 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 48266 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 487-233 chr5 83245759 83246149 + 2 NA intron (NM_001318012, intron 6 of 7) intron (NM_001318012, intron 6 of 7) 168407 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 588-77 chr2 193370915 193371324 + 2 NA Intergenic LTR16A2|LTR|ERVL 621274 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 247-59 chr11 78871859 78872045 + 2 NA intron (NM_001098816, intron 9 of 33) MIRb|SINE|MIR -297088 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 595-102 chr20 43044312 43044869 + 2 NA intron (NM_133170, intron 1 of 31) MIR|SINE|MIR 75847 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 332-398 chr5 4034024 4034322 + 2 NA Intergenic L1P3|LINE|L1 438341 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 423-54 chr12 1157121 1157390 + 2 NA intron (NR_027948, intron 7 of 19) AluJb|SINE|Alu 129507 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 335-121 chr12 21243046 21243314 + 2 NA Intergenic L1MA1|LINE|L1 91737 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 807-35 chr20 43313419 43314022 + 2 NA Intergenic Intergenic -123814 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 221-167 chr20 58735446 58735624 + 2 NA Intergenic L1MA7|LINE|L1 -37890 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 290-420 chr7 52126560 52126752 + 2 NA Intergenic MIR|SINE|MIR -733400 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 278-89 chr13 50691961 50692191 + 2 NA Intergenic L2a|LINE|L2 -115779 NR_046551 100874074 Hs.734030 NR_046551 ENSG00000176124 DLEU7-AS1 - DLEU7 antisense RNA 1 ncRNA 288-406 chr7 49898580 49898845 + 2 NA intron (NR_136188, intron 2 of 3) L1MD2|LINE|L1 123379 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 157-129 chr8 87737722 87737864 + 2 NA Intergenic Intergenic 136222 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 322-257 chr2 106823536 106823710 + 2 NA intron (NM_001142352, intron 5 of 5) intron (NM_001142352, intron 5 of 5) 62405 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 336-577 chr9 36792925 36793121 + 2 NA Intergenic MER3|DNA|hAT-Charlie 30576 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 249-293 chr4 54115171 54115334 + 2 NA Intergenic L1MB2|LINE|L1 15089 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 370-168 chr16 17633294 17633615 + 2 NA Intergenic Intergenic -162494 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 363-175 chr17 34344929 34345174 + 2 NA Intergenic L1ME3|LINE|L1 -11429 NM_005408 6357 Hs.414629 NM_005408 ENSG00000181374 CCL13 CKb10|MCP-4|NCC-1|NCC1|SCYA13|SCYL1 C-C motif chemokine ligand 13 protein-coding 565-107 chr21 27116445 27116876 + 2 NA Intergenic Intergenic -149572 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 362-274 chr3 89370736 89370976 + 2 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 263235 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 507-57 chr11 83881854 83882253 + 2 NA intron (NM_001142700, intron 7 of 19) Tigger13a|DNA|TcMar-Tigger -199628 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 445-31 chr11 12628837 12629188 + 2 NA Intergenic Intergenic -45409 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 266-281 chr4 53500986 53501172 + 2 NA intron (NR_046622, intron 2 of 3) intron (NR_046622, intron 2 of 3) 1002 NR_046622 100873939 Hs.662372 NR_046622 ENSG00000250930 LNX1-AS1 - LNX1 antisense RNA 1 ncRNA 238-234 chr3 51071427 51071620 + 2 NA intron (NM_004947, intron 6 of 52) intron (NM_004947, intron 6 of 52) -313768 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 224-203 chr3 88860408 88860616 + 2 NA Intergenic Intergenic -247109 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 378-225 chr2 60273446 60273649 + 2 NA Intergenic Intergenic 109489 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 238-382 chr8 82912105 82912262 + 2 NA promoter-TSS (NR_134295) promoter-TSS (NR_134295) 79 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 209-166 chr2 215362238 215362426 + 2 NA intron (NM_212482, intron 44 of 45) intron (NM_212482, intron 44 of 45) 50273 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 194-118 chr3 33705727 33705839 + 2 NA intron (NM_001365634, intron 1 of 35) L1MC5|LINE|L1 12471 NM_001365629 23122 Hs.108614 NM_015097 ENSG00000163539 CLASP2 - cytoplasmic linker associated protein 2 protein-coding 318-283 chr2 122987056 122987244 + 2 NA Intergenic Intergenic 86331 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 249-189 chr2 51269470 51269657 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 236962 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 407-75 chr13 94954078 94954348 + 2 NA Intergenic L1PA16|LINE|L1 -5828 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 198-144 chr20 39700849 39700986 + 2 NA Intergenic HAL1b|LINE|L1 -303544 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 413-294 chr8 31710825 31711127 + 2 NA intron (NM_013962, intron 1 of 4) L1M7|LINE|L1 71224 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 454-127 chr18 71319308 71319690 + 2 NA Intergenic L1ME3A|LINE|L1 259457 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 305-561 chr9 82507703 82507980 + 2 NA Intergenic L1PB1|LINE|L1 519069 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 244-69 chr12 47041381 47041569 + 2 NA Intergenic Intergenic -38128 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 300-352 chr5 23400687 23400910 + 2 NA Intergenic MER31-int|LTR|ERV1 -106811 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 378-358 chr5 178944286 178944595 + 2 NA intron (NM_001323307, intron 2 of 4) L2a|LINE|L2 3242 NM_001323309 285676 Hs.259441 NM_182594 ENSG00000178187 ZNF454 - zinc finger protein 454 protein-coding 185-170 chr5 101871751 101871886 + 2 NA Intergenic Intergenic 424466 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 237-173 chr2 56977654 56977876 + 2 NA Intergenic Intergenic -791995 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 297-350 chr4 172397552 172397728 + 2 NA intron (NM_001034845, intron 5 of 12) AluSc|SINE|Alu 291277 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 418-110 chr2 43479601 43479924 + 2 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 116212 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 244-328 chr6 117928044 117928232 + 2 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 20874 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 466-41 chr10 121154231 121154581 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 303044 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 315-47 chr10 32433842 32434140 + 2 NA TTS (NR_120660) TTS (NR_120660) 12065 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 468-111 chr17 39020854 39021178 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 6094 NR_135645 105371766 Hs.311469 NR_135645 ENSG00000266013 LINC02079 - long intergenic non-protein coding RNA 2079 ncRNA 632-109 chr7 116389581 116390185 + 2 NA Intergenic Intergenic -103156 NR_130922 102724434 Hs.667624 NR_130921 ENSG00000237870 LOC102724434 - uncharacterized LOC102724434 ncRNA 233-112 chr15 76398924 76399087 + 2 NA intron (NR_148227, intron 28 of 32) intron (NR_148227, intron 28 of 32) 62232 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 268-432 chr9 27181300 27181466 + 2 NA intron (NM_000459, intron 7 of 22) Tigger2b_Pri|DNA|TcMar-Tigger 72242 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 338-237 chr19 39003983 39004246 + 2 NA Intergenic AluSx1|SINE|Alu -28372 NM_024907 115290 Hs.531770 NM_024907 ENSG00000269190 FBXO17 FBG4|FBX26|FBXO26|Fbx17 F-box protein 17 protein-coding 568-122 chr20 55692442 55692856 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -265452 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 353-138 chr14 54357166 54357407 + 2 NA Intergenic L1MA8|LINE|L1 -39582 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 147-24 chr14 79561266 79561344 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 281925 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 413-72 chr12 106228694 106228978 + 2 NA Intergenic Intergenic 19184 NM_006825 10970 Hs.74368 NM_006825 ENSG00000136026 CKAP4 CLIMP-63|ERGIC-63|p63 cytoskeleton associated protein 4 protein-coding 372-348 chr4 6486775 6487108 + 2 NA intron (NM_001206994, intron 2 of 9) L1MEc|LINE|L1 -14327 NM_001363388 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 238-413 chr9 37610395 37610586 + 2 NA intron (NM_001371225, intron 1 of 15) intron (NM_001371225, intron 1 of 15) 7261 NM_001371225 275-312 chr6 65544324 65544476 + 2 NA intron (NM_001292009, intron 2 of 43) THE1C|LTR|ERVL-MaLR 35404 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 474-172 chr21 23134711 23135056 + 2 NA Intergenic Intergenic 55599 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 258-6 chr1 56896427 56896634 + 2 NA intron (NM_000562, intron 7 of 10) MLT2B4|LTR|ERVL 41760 NM_000562 731 Hs.93210 NM_000562 ENSG00000157131 C8A - complement C8 alpha chain protein-coding 328-70 chr10 130819311 130819480 + 2 NA Intergenic Intergenic 143273 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 230-191 chr2 191103769 191103929 + 2 NA intron (NM_003151, intron 3 of 23) intron (NM_003151, intron 3 of 23) 47145 NM_003151 6775 Hs.80642 NM_003151 ENSG00000138378 STAT4 SLEB11 signal transducer and activator of transcription 4 protein-coding 216-94 chr14 53497773 53497928 + 2 NA Intergenic Intergenic 344496 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 354-279 chr22_KI270738v1_random 37475 37804 + 2 NA NA Intergenic NA NA 381-179 chr2 2553138 2553419 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -222003 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 350-97 chr12 46901240 46901578 + 2 NA Intergenic Intergenic -75412 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 525-239 chr7 51267649 51267999 + 2 NA intron (NM_015198, intron 1 of 12) AluSx1|SINE|Alu 48985 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 379 chr1 13859113 13859428 + 2 NA Intergenic MIRb|SINE|MIR 109855 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 513-218 chr5 15239628 15239973 + 2 NA intron (NR_109944, intron 2 of 2) MSTA-int|LTR|ERVL-MaLR 26760 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 353-191 chr17 69289347 69289588 + 2 NA intron (NM_018672, intron 12 of 37) intron (NM_018672, intron 12 of 37) 26166 NM_018672 23461 Hs.731824 NM_018672 ENSG00000154265 ABCA5 ABC13|EST90625|HTC3 ATP binding cassette subfamily A member 5 protein-coding 235-320 chr7 23815752 23815923 + 2 NA intron (NM_031414, intron 23 of 23) intron (NM_031414, intron 23 of 23) 105618 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 262-224 chr2 136627370 136627570 + 2 NA Intergenic Intergenic -138075 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 269-409 chr8 113525364 113525593 + 2 NA Intergenic MER50-int|LTR|ERV1 -88539 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 434-50 chr11 81320075 81320416 + 2 NA Intergenic Intergenic -557442 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 326-368 chr4 31290258 31290470 + 2 NA Intergenic L1MA6|LINE|L1 119220 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 164-36 chr14 51821255 51821413 + 2 NA Intergenic L1ME4a|LINE|L1 -39278 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 194-122 chr3 76416360 76416529 + 2 NA Intergenic Intergenic -623655 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 522-50 chr11 81270393 81270743 + 2 NA Intergenic Intergenic -507765 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 327-188 chr16 65683719 65683976 + 2 NA Intergenic L1ME4a|LINE|L1 -107547 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 338-429 chr5 43466747 43466952 + 2 NA intron (NM_022483, intron 1 of 2) L1MA1|LINE|L1 17016 NM_022483 64417 Hs.732093 NM_022483 ENSG00000151881 TMEM267 C5orf28 transmembrane protein 267 protein-coding 487-259 chr7 1019446 1019843 + 2 NA intron (NR_146964, intron 1 of 4) intron (NR_146964, intron 1 of 4) 3382 NR_029898 442907 NR_029898 ENSG00000199023 MIR339 MIRN339|hsa-mir-339|mir-339 microRNA 339 ncRNA 218-9 chr1 82679265 82679476 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie -223813 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 268-119 chr14 61665812 61666045 + 2 NA Intergenic Intergenic -29585 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 228-173 chr2 108232356 108232531 + 2 NA Intergenic L1M4c|LINE|L1 -7525 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 695-95 chr6 138053685 138054228 + 2 NA Intergenic L1PB1|LINE|L1 53463 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 557-47 chr12 124299979 124300436 + 2 NA intron (NM_001365156, intron 1 of 2) intron (NM_001365156, intron 1 of 2) 5114 NM_001365156 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 374-31 chr10 52715649 52715968 + 2 NA intron (NR_155748, intron 1 of 2) MIRc|SINE|MIR 39596 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 318-310 chr20 125655 125947 + 2 NA Intergenic L1MDa|LINE|L1 -16789 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 218-41 chr11 11725830 11726024 + 2 NA Intergenic L3|LINE|CR1 57295 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 180-34 chr12 13411150 13411249 + 2 NA Intergenic L1MA4|LINE|L1 -34454 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 339-310 chr20 15778110 15778319 + 2 NA intron (NM_001351663, intron 8 of 17) MIRb|SINE|MIR 145100 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 300-440 chr7 111670025 111670236 + 2 NA Intergenic Intergenic -107613 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 262-208 chr2 85498290 85498481 + 2 NA Intergenic MER57B2|LTR|ERV1 40501 NR_038942 100630918 Hs.66049 NR_038942 PARTICL PARTICLE promoter of MAT2A antisense radiation-induced circulating long non-coding RNA ncRNA 118 chr1 60053779 60053854 + 2 NA intron (NM_152377, intron 3 of 11) intron (NM_152377, intron 3 of 11) 19954 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 289-309 chr3 97168420 97168580 + 2 NA intron (NM_001080448, intron 3 of 17) MSTA|LTR|ERVL-MaLR -271107 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 346-222 chr19 57622255 57622451 + 2 NA 3' UTR (NM_003435, exon 3 of 3) 3' UTR (NM_003435, exon 3 of 3) 8111 NM_003435 7693 Hs.469694 NM_003435 ENSG00000213762 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 202-191 chr4 108725704 108725853 + 2 NA Intergenic MER50-int|LTR|ERV1 37275 NM_031279 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 406-162 chr2 233639600 233639860 + 2 NA intron (NM_019075, intron 1 of 4) intron (NM_019075, intron 1 of 4) 3253 NM_019075 54575 Hs.554822 NM_019075 ENSG00000242515 UGT1A10 GNT1|UDPGT|UGT-1A|UGT-1J|UGT1|UGT1-01|UGT1-10|UGT1.1|UGT1.10|UGT1A|UGT1A1|UGT1J|hUG-BR1 UDP glucuronosyltransferase family 1 member A10 protein-coding 615-53 chr18 11347106 11347603 + 2 NA Intergenic L1MCa|LINE|L1 -107124 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 523-45 chr10 106034232 106034633 + 2 NA Intergenic Intergenic -105733 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 321-611 chrX 51545034 51545336 + 2 NA Intergenic Intergenic -37744 NR_110654 102723426 Hs.584513 NR_110654 LINC01496 - long intergenic non-protein coding RNA 1496 ncRNA 249-161 chr18 5044052 5044249 + 2 NA Intergenic Intergenic -37032 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 895-35 chr5 68810982 68811735 + 2 NA Intergenic AluSx1|SINE|Alu 218569 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 391-261 chr4 75250896 75251147 + 2 NA Intergenic Intergenic -103055 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 356-414 chr5 144578653 144578905 + 2 NA Intergenic L2a|LINE|L2 373388 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 352-31 chr1 227559174 227559389 + 2 NA Intergenic (CT)n|Simple_repeat|Simple_repeat -4275 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 253-250 chr3 36947256 36947398 + 2 NA Intergenic Intergenic -2273 NM_001329998 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 293-50 chr10 126771339 126771558 + 2 NA Intergenic L1M5|LINE|L1 -100938 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 120-44 chr6 24245655 24245761 + 2 NA intron (NM_016356, intron 7 of 9) L1MEd|LINE|L1 -111195 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 335-126 chr12 43707602 43707784 + 2 NA Intergenic L1M1|LINE|L1 51097 NM_031292 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 261-235 chr3 38823008 38823198 + 2 NA Intergenic L2b|LINE|L2 -29093 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 611-110 chr4 115490587 115491012 + 2 NA Intergenic L1PBa|LINE|L1 -377179 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 235-297 chr5 145768315 145768466 + 2 NA intron (NM_205846, intron 5 of 6) L2c|LINE|L2 66952 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 436-12 chr1 95413939 95414176 + 2 NA Intergenic LTR37B|LTR|ERV1 -60680 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 362-119 chr12 61183911 61184262 + 2 NA Intergenic (TATACA)n|Simple_repeat|Simple_repeat 1008753 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 313-237 chr2 22183272 22183491 + 2 NA Intergenic L1M5|LINE|L1 -353098 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 558-234 chr9 96761160 96761561 + 2 NA intron (NM_001314060, intron 4 of 4) intron (NM_001314060, intron 4 of 4) 16727 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 156-66 chr3 76870434 76870549 + 2 NA Intergenic Intergenic -169608 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 367-296 chr3 118028401 118028693 + 2 NA Intergenic L1MA1|LINE|L1 -337622 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 277-230 chr20 42021732 42021966 + 2 NA Intergenic MLT2B1|LTR|ERVL -403472 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 316-565 chr8 126439370 126439575 + 2 NA Intergenic MamRep137|DNA|TcMar-Tigger 113977 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 207-18 chr1 166365231 166365421 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 124713 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 243-319 chr4 42747871 42748062 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie -90861 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 295-278 chr22 34895309 34895514 + 2 NA intron (NR_138042, intron 3 of 4) L2a|LINE|L2 102505 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 310-112 chr13 39928631 39928911 + 2 NA Intergenic Intergenic -253038 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 424-97 chr17 58750307 58750596 + 2 NA Intergenic L1MC2|LINE|L1 -5403 NM_014906 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 246-242 chr21 32629347 32629538 + 2 NA 3' UTR (NM_001160306, exon 28 of 28) 3' UTR (NM_001160306, exon 28 of 28) -16571 NM_001350335 56683 Hs.5811 NM_017835 ENSG00000159079 CFAP298 C21orf48|C21orf59|CILD26|FBB18|Kur cilia and flagella associated protein 298 protein-coding 397-116 chr17 34900179 34900417 + 2 NA Intergenic L1ME4b|LINE|L1 61162 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 370-118 chr12 101999033 101999356 + 2 NA Intergenic L1MB3|LINE|L1 62797 NM_016053 51019 Hs.405692 NM_016053 ENSG00000120860 WASHC3 CCDC53|CGI-116 WASH complex subunit 3 protein-coding 293-390 chr7 16971189 16971364 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy -89293 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 131-47 chr21 23467656 23467760 + 2 NA Intergenic Intergenic -82873 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 309-532 chr8 50251847 50252069 + 2 NA intron (NR_135797, intron 2 of 20) L1MA4A|LINE|L1 87827 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 369-400 chr8 49364918 49365257 + 2 NA Intergenic Intergenic 147093 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 262-23 chr1 178568561 178568749 + 2 NA Intergenic L1M4|LINE|L1 25859 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 239-34 chr10 56679055 56679219 + 2 NA Intergenic L2|LINE|L2 -317864 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 200-127 chr2 54366711 54366852 + 2 NA Intergenic L1MEi|LINE|L1 35897 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 404-220 chr3 144453587 144453832 + 2 NA Intergenic Intergenic 480628 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 287-249 chr3 80249199 80249365 + 2 NA Intergenic L1PA10|LINE|L1 -481284 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 263-25 chr1 183760831 183761021 + 2 NA intron (NM_001297669, intron 3 of 18) Tigger1|DNA|TcMar-Tigger -44194 NM_001297672 23179 Hs.497148 NM_015149 ENSG00000143344 RGL1 RGL ral guanine nucleotide dissociation stimulator like 1 protein-coding 255-89 chr13 42748820 42749015 + 2 NA Intergenic L2b|LINE|L2 -32633 NM_182508 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 357-238 chr20 24887933 24888281 + 2 NA Intergenic L1MB3|LINE|L1 -61162 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 478-89 chr14 87380350 87380725 + 2 NA Intergenic L1MEg|LINE|L1 274757 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 327-151 chr14 61201847 61202077 + 2 NA Intergenic HAL1ME|LINE|L1 79376 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 735-2 chr1 56629921 56630491 + 2 NA intron (NR_135111, intron 2 of 2) intron (NR_135111, intron 2 of 2) -15108 NM_006252 5563 Hs.437039 NM_006252 ENSG00000162409 PRKAA2 AMPK|AMPK2|AMPKa2|PRKAA protein kinase AMP-activated catalytic subunit alpha 2 protein-coding 353-395 chr4 177126712 177127042 + 2 NA Intergenic Intergenic -182997 NM_018248 55247 Hs.405467 NM_018248 ENSG00000109674 NEIL3 FGP2|FPG2|NEI3|ZGRF3|hFPG2|hNEI3 nei like DNA glycosylase 3 protein-coding 320-578 chr8 135295667 135295836 + 2 NA intron (NR_120396, intron 3 of 4) intron (NR_120396, intron 3 of 4) 61620 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 237-348 chr7 25312136 25312321 + 2 NA Intergenic Intergenic -83742 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 361-494 chrX 137659726 137660075 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 93773 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 598-7 chr1 157553840 157554415 + 2 NA Intergenic L1M5|LINE|L1 -1612 NM_031281 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 579-25 chr11 105336964 105337382 + 2 NA Intergenic L1PA11|LINE|L1 -197404 NM_021571 59082 Hs.56279 NM_021571 ENSG00000255501 CARD18 ICEBERG|UNQ5804|pseudo-ICE caspase recruitment domain family member 18 protein-coding 289-307 chr3 94384005 94384162 + 2 NA Intergenic L1PA15|LINE|L1 321022 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 330-504 chr8 15750421 15750654 + 2 NA intron (NM_178234, intron 9 of 9) intron (NM_178234, intron 9 of 9) 210274 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 438-158 chr22 34913263 34913631 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 84469 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 205-3 chr1 14608300 14608498 + 2 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 9682 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 628-95 chr4 86112870 86113379 + 2 NA intron (NM_001363657, intron 4 of 13) L1PA10|LINE|L1 -6682 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 237-295 chr5 52701357 52701552 + 2 NA Intergenic Intergenic -86462 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 313-151 chr14 67187153 67187434 + 2 NA Intergenic Intergenic -2147 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 301-206 chr2 71958032 71958218 + 2 NA Intergenic L1PA16|LINE|L1 189737 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 336-492 chr6 66777600 66777870 + 2 NA Intergenic L1PREC2|LINE|L1 989856 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 175-118 chr4 113757241 113757359 + 2 NA intron (NM_001321592, intron 2 of 2) MIR|SINE|MIR 4438 NM_001321572 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 317-78 chr11 28462930 28463150 + 2 NA Intergenic L2c|LINE|L2 14508 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 624-42 chr15 87693137 87693574 + 2 NA Intergenic L2c|LINE|L2 116426 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 529-169 chr5 7110502 7110891 + 2 NA Intergenic L1MC1|LINE|L1 158658 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 237-329 chr6 67975947 67976170 + 2 NA Intergenic Intergenic -79293 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 611-125 chr5 145380867 145381380 + 2 NA Intergenic Intergenic 454219 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 283-431 chr8 30410530 30410720 + 2 NA intron (NM_001008710, intron 1 of 8) intron (NM_001008710, intron 1 of 8) -25224 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 327-114 chr12 41813306 41813489 + 2 NA Intergenic L1PA16|LINE|L1 49208 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 287-10 chr1 68368840 68369073 + 2 NA Intergenic Intergenic 80998 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 499-282 chr9 29408047 29408437 + 2 NA Intergenic Intergenic -194641 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 438-123 chr2 78839650 78839897 + 2 NA Intergenic Intergenic -185929 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 190-66 chr15 87891415 87891568 + 2 NA intron (NM_001012338, intron 17 of 19) L1MC5a|LINE|L1 54777 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 262-113 chr13 106179786 106180001 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR -196671 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 292-399 chr7 15804724 15805008 + 2 NA Intergenic L1M5|LINE|L1 116488 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 362-232 chr2 150887493 150887746 + 2 NA Intergenic L1M5|LINE|L1 258722 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 672-122 chrX 41897170 41897707 + 2 NA intron (NM_003688, intron 1 of 26) L1M2|LINE|L1 25596 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 205-45 chr10 116845816 116845983 + 2 NA intron (NM_001330164, intron 1 of 12) intron (NM_001330164, intron 1 of 12) -3600 NM_001242699 387712 Hs.693248 NM_001242699 ENSG00000188316 ENO4 C10orf134 enolase 4 protein-coding 239-106 chr14 65609985 65610160 + 2 NA intron (NM_178156, intron 2 of 9) L1M4|LINE|L1 138970 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 343-562 chr8 134404930 134405164 + 2 NA Intergenic Intergenic -193024 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 333-575 chr8 100851817 100852124 + 2 NA Intergenic Intergenic 98601 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 399-275 chr7 23853915 23854217 + 2 NA Intergenic L1MB7|LINE|L1 143847 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 251-81 chr13 89416422 89416602 + 2 NA Intergenic L2c|LINE|L2 83997 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 311-383 chr4 83159494 83159747 + 2 NA Intergenic Intergenic -44891 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 317-125 chr13 59551930 59552221 + 2 NA Intergenic L1MA6|LINE|L1 -460643 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 225-165 chr2 139887151 139887346 + 2 NA Intergenic Intergenic 699437 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 347-448 chr6 163099330 163099593 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -45300 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 189-84 chr2 4098496 4098672 + 2 NA Intergenic Intergenic 124423 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 312-243 chr2 83296048 83296311 + 2 NA Intergenic L1MEb|LINE|L1 -226635 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 274-46 chr10 64315860 64316074 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -509561 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 496-161 chr20 40539602 40540054 + 2 NA Intergenic L1MA10|LINE|L1 149408 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 307-60 chr10 64432439 64432689 + 2 NA Intergenic L1MC4a|LINE|L1 -392964 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 351-18 chr1 188216873 188217136 + 2 NA Intergenic L1MEc|LINE|L1 773376 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 281-154 chr16 84342752 84342925 + 2 NA Intergenic LTR23|LTR|ERV1 -25685 NM_014861 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 282-95 chr12 38445421 38445683 + 2 NA Intergenic Intergenic 128778 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 545-23 chr10 56331856 56332211 + 2 NA Intergenic L1MD2|LINE|L1 29226 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 221-151 chr2 138280526 138280661 + 2 NA Intergenic Intergenic 178709 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 366-131 chr14 83267597 83267935 + 2 NA Intergenic Intergenic 625134 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 346-310 chr3 43651605 43651929 + 2 NA intron (NM_001346469, intron 1 of 11) LTR78B|LTR|ERV1 -29690 NM_001204831 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 296-17 chr1 171879574 171879783 + 2 NA intron (NM_001278252, intron 1 of 14) LTR67B|LTR|ERVL 15486 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 410-214 chr4 58225566 58225869 + 2 NA Intergenic LTR78B|LTR|ERV1 310611 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 222-181 chr2 107051116 107051313 + 2 NA Intergenic AluY|SINE|Alu -164105 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 274-230 chr20 935949 936178 + 2 NA Intergenic L2a|LINE|L2 -19729 NM_001322809 51378 Hs.278973 NM_015985 ENSG00000101280 ANGPT4 ANG3|ANG4 angiopoietin 4 protein-coding 326-283 chr2 220160608 220160810 + 2 NA Intergenic Intergenic -254144 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 337-255 chr2 66406578 66406825 + 2 NA Intergenic L1ME1|LINE|L1 23395 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 347-61 chr10 111469624 111469958 + 2 NA Intergenic Intergenic 355500 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 224-239 chr5 11715470 11715644 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -126491 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 574-35 chr12 127606485 127606859 + 2 NA Intergenic Intergenic 29795 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 274-125 chr14 58679057 58679194 + 2 NA Intergenic Intergenic 40288 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 245-153 chr16 71227011 71227164 + 2 NA intron (NM_001198543, intron 1 of 18) L1ME1|LINE|L1 3635 NM_001198542 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 227-297 chr5 152015063 152015222 + 2 NA intron (NR_109876, intron 1 of 2) (TA)n|Simple_repeat|Simple_repeat 56244 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 163-116 chr7 80177306 80177434 + 2 NA intron (NM_001256414, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 41586 NM_001256414 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 264-259 chr22 29194616 29194828 + 2 NA Intergenic AluSx1|SINE|Alu -11174 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 309-505 chr7 19945464 19945624 + 2 NA intron (NR_110114, intron 5 of 5) intron (NR_110114, intron 5 of 5) -171927 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 642-56 chr2 115685677 115686275 + 2 NA intron (NM_001321912, intron 6 of 25) Tigger17a|DNA|TcMar-Tigger 342161 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 495-221 chr6 95276490 95276929 + 2 NA Intergenic Intergenic 300742 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 372-246 chr2 105268619 105268903 + 2 NA intron (NM_001142621, intron 11 of 11) intron (NM_001142621, intron 11 of 11) 27018 NM_007227 11250 Hs.590903 NM_007227 ENSG00000135973 GPR45 PSP24|PSP24(ALPHA)|PSP24A G protein-coupled receptor 45 protein-coding 203-171 chr4 112707681 112707831 + 2 NA intron (NM_001354269, intron 1 of 43) intron (NM_001354269, intron 1 of 43) 1738 NM_001354269 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 322-82 chr11 25587329 25587579 + 2 NA Intergenic Intergenic -601669 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 207-93 chr15 84625272 84625403 + 2 NA Intergenic Intergenic -6123 NR_004859 54581 Hs.658114 NM_022050 SCAND2P SCAND2 SCAN domain containing 2 pseudogene pseudo 287-115 chr12 62991550 62991804 + 2 NA Intergenic L1MC5a|LINE|L1 -56527 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 430-207 chr4 31780832 31781217 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -216355 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 275-4 chr1 56148529 56148799 + 2 NA Intergenic Intergenic 203577 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 476-106 chr16 83598660 83599114 + 2 NA intron (NM_001220489, intron 6 of 12) MLT1K|LTR|ERVL-MaLR 90541 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 198-235 chr7 87296874 87297031 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 48540 NR_015381 11257 Hs.274329 NM_007233 ENSG00000182165 TP53TG1 LINC00096|NCRNA00096|P53TG1|P53TG1-D|TP53AP1 TP53 target 1 ncRNA 473-167 chr22 32394588 32394905 + 2 NA intron (NM_014306, intron 9 of 11) intron (NM_014306, intron 9 of 11) 17501 NM_014306 51493 Hs.474643 NM_014306 ENSG00000100220 RTCB C22orf28|DJ149A16.6|FAAP|HSPC117 RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding 363-170 chr16 78407288 78407644 + 2 NA intron (NM_001291997, intron 5 of 7) intron (NM_001291997, intron 5 of 7) 307812 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 318-30 chr1 177415580 177415854 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 64131 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 200-266 chr8 49571333 49571472 + 2 NA Intergenic L1MA7|LINE|L1 -59222 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 253-442 chrX 137546630 137546782 + 2 NA Intergenic Intergenic -19421 NM_001330661 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 206-200 chr5 36334537 36334692 + 2 NA Intergenic Intergenic -32712 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 148-15 chr11 114292168 114292302 + 2 NA Intergenic Intergenic -3578 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 350-122 chr14 19838952 19839295 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 30050 NR_145507 283617 NM_001348266 ENSG00000176290 OR4K3 OR14-10|OR4K3P olfactory receptor family 4 subfamily K member 3 (gene/pseudogene) protein-coding 279-100 chr14 41404162 41404369 + 2 NA Intergenic Intergenic -202591 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 262-425 chr8 68077395 68077652 + 2 NA intron (NM_024870, intron 15 of 39) intron (NM_024870, intron 15 of 39) 125477 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 271-168 chr17 68538791 68539002 + 2 NA intron (NM_017565, intron 10 of 10) Tigger3a|DNA|TcMar-Tigger 19531 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 254-409 chr8 84901290 84901498 + 2 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) 195467 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 165-108 chr6 49767231 49767351 + 2 NA Intergenic Intergenic 19994 NM_138733 5232 Hs.367727 NM_138733 ENSG00000170950 PGK2 HEL-S-272|PGKB|PGKPS|dJ417L20.2 phosphoglycerate kinase 2 protein-coding 190-181 chr8 123502238 123502395 + 2 NA 3' UTR (NM_001242463, exon 7 of 7) 3' UTR (NM_001242463, exon 7 of 7) 29827 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 204-88 chr14 53370645 53370787 + 2 NA Intergenic Intergenic 217362 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 447-102 chr18 37979682 37980061 + 2 NA Intergenic Intergenic 322736 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 289-164 chr16 17961614 17961873 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 370919 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 534-260 chr8 100182762 100183240 + 2 NA intron (NM_003114, intron 4 of 18) AluSz|SINE|Alu 24666 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 480-208 chr4 32297647 32297967 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -53231 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 196-86 chr15 96803592 96803734 + 2 NA Intergenic Intergenic 20228 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 498-3 chr1 37170284 37170778 + 2 NA Intergenic Intergenic 8968 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 280-24 chr1 161992322 161992534 + 2 NA intron (NM_001347700, intron 6 of 7) Tigger1|DNA|TcMar-Tigger 32037 NM_015441 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 356-502 chr9 28750943 28751245 + 2 NA intron (NM_001354574, intron 2 of 5) AluJr|SINE|Alu -31789 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 155-54 chr2 106957753 106957881 + 2 NA Intergenic L1MC4|LINE|L1 -70708 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 455-234 chr5 156762567 156762936 + 2 NA 3' UTR (NM_000337, exon 9 of 9) 3' UTR (NM_000337, exon 9 of 9) -87544 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 264-301 chr4 125753207 125753351 + 2 NA Intergenic Intergenic 246020 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 387-172 chr2 83524634 83524930 + 2 NA Intergenic Intergenic 1968 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 235-12 chr1 94742512 94742735 + 2 NA intron (NR_160781, intron 1 of 4) MLT1B|LTR|ERVL-MaLR 3277 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 400-89 chr14 42230814 42231155 + 2 NA Intergenic Intergenic 624128 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 533-218 chr7 69081886 69082249 + 2 NA Intergenic AluSx|SINE|Alu 515557 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 288-171 chr2 651425 651650 + 2 NA Intergenic L1MEd|LINE|L1 25167 NM_001352681 129787 Hs.6729 NM_152834 ENSG00000151353 TMEM18 lncND transmembrane protein 18 protein-coding 332-274 chr2 190539018 190539285 + 2 NA Intergenic L1MA4|LINE|L1 -4429 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 335-32 chr1 223494037 223494358 + 2 NA Intergenic Intergenic 100782 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 315-298 chr22 26900536 26900797 + 2 NA Intergenic MIRb|SINE|MIR -2626 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 193-108 chr2 101517635 101517758 + 2 NA Intergenic Intergenic -42584 NM_001367510 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 309-515 chr7 65904761 65904990 + 2 NA intron (NM_001284342, intron 1 of 1) intron (NM_001284342, intron 1 of 1) 31801 NM_001284342 154807 Hs.427232 NM_173517 ENSG00000196715 VKORC1L1 - vitamin K epoxide reductase complex subunit 1 like 1 protein-coding 265-422 chrX 50751035 50751228 + 2 NA intron (NR_027121, intron 1 of 9) MamGypsy2-I|LTR|Gypsy 62913 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 337-145 chr14 27641213 27641424 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -8040 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 262-441 chr8 136454917 136455158 + 2 NA Intergenic L2b|LINE|L2 -75761 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 424-284 chr8 126675854 126676193 + 2 NA Intergenic L1ME3Cz|LINE|L1 -117545 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 225-300 chr5 166201233 166201421 + 2 NA Intergenic L1MEc|LINE|L1 725043 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 253-36 chr1 237027221 237027416 + 2 NA Intergenic CR1_Mam|LINE|CR1 -14866 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 789-21 chr16 80861924 80862568 + 2 NA intron (NR_131948, intron 1 of 2) intron (NR_131948, intron 1 of 2) 30350 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 288-85 chr12 65432290 65432526 + 2 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 124903 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 403-87 chr13 92543482 92543799 + 2 NA intron (NM_004466, intron 7 of 7) L1M2|LINE|L1 53477 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 514-153 chr2 121668790 121669143 + 2 NA intron (NR_037857, intron 2 of 3) L1M4|LINE|L1 18977 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 188-146 chr4 32752635 32752786 + 2 NA Intergenic Intergenic 401672 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 275-14 chr1 116232808 116232997 + 2 NA Intergenic L1ME3G|LINE|L1 121147 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 334-124 chr12 129968942 129969248 + 2 NA Intergenic Intergenic -65070 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 213-164 chr20 57570822 57570965 + 2 NA Intergenic Intergenic 9783 NM_002591 5105 Hs.1872 NM_002591 ENSG00000124253 PCK1 PCKDC|PEPCK-C|PEPCK1|PEPCKC phosphoenolpyruvate carboxykinase 1 protein-coding 271-267 chr3 68715177 68715414 + 2 NA Intergenic Intergenic 214658 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 652-100 chr5 168919582 168919983 + 2 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) -93445 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 204-264 chr7 11891235 11891384 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -59111 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 268-131 chr15 70711872 70712038 + 2 NA intron (NM_018003, intron 1 of 18) intron (NM_018003, intron 1 of 18) -9673 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 278-217 chr2 77941537 77941772 + 2 NA intron (NR_110288, intron 1 of 3) L2a|LINE|L2 13372 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 578-134 chr4 158951542 158951958 + 2 NA intron (NM_152543, intron 3 of 4) intron (NM_152543, intron 3 of 4) 83479 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 278-403 chr7 115514757 115514952 + 2 NA Intergenic Intergenic 66587 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 154-61 chr21 20383865 20383964 + 2 NA Intergenic L1MC1|LINE|L1 -125229 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 301-20 chr1 195225253 195225518 + 2 NA Intergenic Intergenic 863330 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 286-252 chr20 56060490 56060712 + 2 NA Intergenic Intergenic -55082 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 339-100 chr11 64535858 64536185 + 2 NA Intergenic LTR16|LTR|ERVL -19920 NM_001307985 55867 Hs.220844 NM_018484 ENSG00000168065 SLC22A11 OAT4|hOAT4 solute carrier family 22 member 11 protein-coding 547-37 chr11 62027942 62028320 + 2 NA Intergenic AluSx|SINE|Alu -60497 NM_002032 2495 Hs.524910 NM_002032 ENSG00000167996 FTH1 FHC|FTH|FTHL6|HFE5|PIG15|PLIF ferritin heavy chain 1 protein-coding 502-246 chr7 62656401 62656800 + 2 NA Intergenic ALR/Alpha|Satellite|centr 647456 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 338-183 chr15 76024981 76025183 + 2 NA Intergenic L1M2c|LINE|L1 -12658 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 298-122 chr14 64493565 64493820 + 2 NA intron (NM_001304508, intron 1 of 2) intron (NM_001304508, intron 1 of 2) 4300 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 332-589 chrX 67080130 67080403 + 2 NA Intergenic L1M1|LINE|L1 -440968 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 351-91 chr12 50672991 50673284 + 2 NA intron (NM_173602, intron 5 of 37) L1ME4a|LINE|L1 -90964 NM_005171 466 Hs.648565 NM_005171 ENSG00000123268 ATF1 EWS-ATF1|FUS/ATF-1|TREB36 activating transcription factor 1 protein-coding 185-168 chr5 96838410 96838546 + 2 NA Intergenic Intergenic -24333 NM_001198541 51752 Hs.666524 NM_016442 ENSG00000164307 ERAP1 A-LAP|ALAP|APPILS|ARTS-1|ARTS1|ERAAP|ERAAP1|PILS-AP|PILSAP endoplasmic reticulum aminopeptidase 1 protein-coding 532-166 chr3 81402212 81402564 + 2 NA Intergenic L1MA9|LINE|L1 359257 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 237-202 chr2 220917258 220917411 + 2 NA Intergenic Intergenic 654970 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 459-141 chr2 103521811 103522208 + 2 NA Intergenic L1MEc|LINE|L1 -537580 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 357-86 chr12 40289992 40290293 + 2 NA intron (NM_198578, intron 20 of 50) L1ME1|LINE|L1 65145 NM_198578 120892 Hs.187636 NM_198578 ENSG00000188906 LRRK2 AURA17|DARDARIN|PARK8|RIPK7|ROCO2 leucine rich repeat kinase 2 protein-coding 447-17 chr1 225209262 225209568 + 2 NA intron (NM_001367479, intron 41 of 85) L1MCc|LINE|L1 218623 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 493-320 chrX 67995849 67996174 + 2 NA Intergenic L1PA15|LINE|L1 437484 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 552-202 chr7 96710128 96710623 + 2 NA promoter-TSS (NM_006304) promoter-TSS (NM_006304) -484 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 375-44 chr10 43360416 43360764 + 2 NA Intergenic Intergenic -11046 NM_173160 53828 Hs.130497 NM_173160 ENSG00000150201 FXYD4 CHIF FXYD domain containing ion transport regulator 4 protein-coding 427-207 chr5 53347032 53347326 + 2 NA Intergenic LTR78|LTR|ERV1 -133450 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 471-52 chr11 90786264 90786654 + 2 NA intron (NR_104190, intron 3 of 6) L1MA9|LINE|L1 82743 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 297-223 chr2 124024393 124024585 + 2 NA promoter-TSS (NM_001367498) promoter-TSS (NM_001367498) 685 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 363-413 chr7 51252022 51252242 + 2 NA intron (NM_015198, intron 1 of 12) L1MC4|LINE|L1 64677 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 252-218 chr2 155563607 155563817 + 2 NA Intergenic Intergenic 691219 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 327-55 chr10 69755482 69755732 + 2 NA Intergenic Intergenic -46299 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 358-516 chr9 78393590 78393892 + 2 NA Intergenic MER4D|LTR|ERV1 96616 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 500-203 chr4 61896965 61897313 + 2 NA intron (NM_001371343, intron 11 of 23) intron (NM_001371343, intron 11 of 23) 264626 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 222-295 chr5 67654490 67654691 + 2 NA Intergenic L1MC4a|LINE|L1 -7801 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 396-336 chr7 71730041 71730376 + 2 NA Intergenic Intergenic -422438 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 486-91 chr14 83905001 83905348 + 2 NA Intergenic AluYj4|SINE|Alu 1262542 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 137-98 chr9 91329802 91329882 + 2 NA intron (NM_001698, intron 3 of 9) L1ME3A|LINE|L1 32082 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 348-370 chr4 93737999 93738307 + 2 NA intron (NM_001286838, intron 13 of 14) L2c|LINE|L2 -90600 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 250-36 chr10 25907484 25907676 + 2 NA Intergenic LTR88b|LTR|Gypsy? 26130 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 203-203 chr6 101990554 101990718 + 2 NA intron (NM_001166247, intron 13 of 16) intron (NM_001166247, intron 13 of 16) 591651 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 518-266 chr7 10541070 10541527 + 2 NA intron (NR_147499, intron 2 of 2) L4_A_Mam|LINE|RTE-X -161378 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 314-458 chr5 39967283 39967577 + 2 NA Intergenic Intergenic -84861 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 254-89 chr12 108563885 108564072 + 2 NA intron (NM_001320042, intron 1 of 4) MARNA|DNA|TcMar-Mariner 2515 NM_014301 23479 Hs.615131 NM_014301 ENSG00000136003 ISCU 2310020H20Rik|HML|ISU2|NIFU|NIFUN|hnifU iron-sulfur cluster assembly enzyme protein-coding 494-262 chr7 4018484 4018889 + 2 NA intron (NM_152744, intron 17 of 44) intron (NM_152744, intron 17 of 44) -110999 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 322-202 chr17 56389195 56389385 + 2 NA intron (NM_001370326, intron 8 of 20) L1MD1|LINE|L1 -204409 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 329-571 chr8 82375535 82375791 + 2 NA Intergenic SATR1|Satellite|Satellite -533377 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 648-143 chr8 56864560 56865069 + 2 NA Intergenic Intergenic 129053 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 560-197 chr9 131542840 131543353 + 2 NA Intergenic AluYe6|SINE|Alu -2427 NM_001365666 642515 NM_001365666 ENSG00000283526 PRRT1B DSPD2|IFITMD8 proline rich transmembrane protein 1B protein-coding 353-259 chr2 146835792 146836046 + 2 NA Intergenic Intergenic 248862 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 308-245 chr2 132543304 132543470 + 2 NA intron (NM_001508, intron 1 of 1) MER61D|LTR|ERV1 109676 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 257-271 chr3 102577483 102577674 + 2 NA Intergenic Intergenic 142563 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 256-292 chr4 84958215 84958467 + 2 NA intron (NM_014991, intron 1 of 67) intron (NM_014991, intron 1 of 67) -7275 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 238-81 chr12 23228351 23228583 + 2 NA Intergenic Intergenic 52831 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 335-165 chr14 85476743 85477027 + 2 NA Intergenic Intergenic -53140 NR_144386 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 234-362 chr7 43324226 43324408 + 2 NA intron (NM_001287059, intron 4 of 27) intron (NM_001287059, intron 4 of 27) 173422 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 286-47 chr10 85756700 85756911 + 2 NA intron (NM_017551, intron 8 of 15) intron (NM_017551, intron 8 of 15) 179074 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 213-46 chr10 101882973 101883128 + 2 NA intron (NM_024541, intron 24 of 25) intron (NM_024541, intron 24 of 25) -39130 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 687-101 chr6 35950496 35950930 + 2 NA intron (NM_001193476, intron 19 of 19) intron (NM_001193476, intron 19 of 19) -29533 NR_034069 6732 Hs.443861 NM_003137 ENSG00000096063 SRPK1 SFRSK1 SRSF protein kinase 1 protein-coding 133-63 chr5 42061857 42061963 + 2 NA Intergenic Intergenic 113435 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 343-248 chr2 79455524 79455750 + 2 NA Intergenic LTR33|LTR|ERVL 45207 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 264-2 chr1 5421030 5421218 + 2 NA Intergenic Intergenic 441617 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 253-305 chr4 129011909 129012076 + 2 NA intron (NM_144643, intron 5 of 20) L1PA13|LINE|L1 81547 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 316-526 chr7 111714738 111715002 + 2 NA Intergenic Intergenic -93635 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 550-111 chr2 59845863 59846294 + 2 NA Intergenic Intergenic 536958 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 304-141 chr14 46252426 46252640 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 188374 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 364-330 chr5 15336018 15336240 + 2 NA Intergenic Intergenic -69569 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 228-110 chr15 53522079 53522298 + 2 NA intron (NM_182758, intron 19 of 19) intron (NM_182758, intron 19 of 19) 18664 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 190-35 chr12 31770104 31770285 + 2 NA Intergenic Intergenic 22104 NM_001013699 440093 Hs.448697 NM_001013699 ENSG00000188375 H3F3C H3.5 H3 histone family member 3C protein-coding 324-89 chr11 55784581 55784805 + 2 NA Intergenic MIRb|SINE|MIR -10863 NM_001004735 219436 Hs.553622 NM_001004735 ENSG00000186113 OR5D14 OR11-141|OR11-150 olfactory receptor family 5 subfamily D member 14 protein-coding 292-389 chr6 161022183 161022394 + 2 NA intron (NM_005922, intron 1 of 26) intron (NM_005922, intron 1 of 26) 30519 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 612-48 chr18 3886424 3886833 + 2 NA intron (NM_001242761, intron 3 of 11) L1MA2|LINE|L1 1275 NR_106776 102465430 NR_106776 ENSG00000275518 MIR6718 hsa-mir-6718 microRNA 6718 ncRNA 314-334 chr20 8689585 8689777 + 2 NA intron (NM_182734, intron 10 of 32) L1MC5a|LINE|L1 -141504 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 332-62 chr10 60367401 60367629 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 22360 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 389-381 chr9 87244727 87244949 + 2 NA Intergenic Intergenic 96194 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 146-35 chr16 80452921 80453063 + 2 NA intron (NR_120307, intron 2 of 5) L2a|LINE|L2 -87742 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 223-319 chr7 78230101 78230247 + 2 NA intron (NM_001301128, intron 10 of 20) intron (NM_001301128, intron 10 of 20) -117068 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 176-114 chr5 126507038 126507167 + 2 NA Intergenic Intergenic 41952 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 508-222 chr7 49573115 49573485 + 2 NA Intergenic L1ME3A|LINE|L1 -200338 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 336-316 chr20 11964523 11964735 + 2 NA Intergenic Intergenic 46736 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 198-58 chr13 87351145 87351323 + 2 NA Intergenic Intergenic 267506 NR_039722 100616182 NR_039722 ENSG00000266052 MIR4500 - microRNA 4500 ncRNA 334-364 chr3 120339641 120339891 + 2 NA intron (NM_001099678, intron 1 of 3) L1MEi|LINE|L1 9588 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 914-3 chr10 66646289 66646876 + 2 NA intron (NM_001127384, intron 9 of 17) L3|LINE|CR1 -279454 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 211-190 chr3 85757985 85758134 + 2 NA intron (NM_001256504, intron 3 of 10) intron (NM_001256504, intron 3 of 10) 31577 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 600-8 chr1 224823638 224824054 + 2 NA Intergenic Intergenic -105808 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 249-98 chr12 119096740 119096958 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 79635 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 184-19 chr1 215830755 215830904 + 2 NA intron (NM_206933, intron 47 of 71) L1ME1|LINE|L1 -241636 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 599-133 chr8 57635784 57636274 + 2 NA Intergenic Intergenic -110120 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 235-288 chr5 74019564 74019715 + 2 NA Intergenic L2c|LINE|L2 206093 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 390-173 chr2 18089252 18089624 + 2 NA Intergenic LTR71B|LTR|ERV1 210771 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 581-75 chr2 31760421 31760809 + 2 NA Intergenic L1MEd|LINE|L1 43365 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 367-109 chr13 53051837 53052069 + 2 NA TTS (NM_006418) TTS (NM_006418) 23140 NM_006418 10562 Hs.508113 NM_006418 ENSG00000102837 OLFM4 GC1|GW112|OLM4|OlfD|UNQ362|bA209J19.1|hGC-1|hOLfD olfactomedin 4 protein-coding 362-25 chr1 112102303 112102509 + 2 NA Intergenic LTR16E2|LTR|ERVL 111870 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 215-29 chr10 44618328 44618488 + 2 NA Intergenic MIR|SINE|MIR -233311 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 238-217 chr21 32201869 32202032 + 2 NA Intergenic HAL1|LINE|L1 77099 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 256-37 chr10 39013979 39014148 + 2 NA Intergenic ALR/Alpha|Satellite|centr 317467 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 354-287 chr3 26073358 26073566 + 2 NA Intergenic Intergenic -199767 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 251-203 chr20 41551367 41551537 + 2 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 66925 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 361-273 chr3 5498223 5498574 + 2 NA Intergenic Intergenic -248143 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 482-14 chr1 116743553 116744007 + 2 NA Intergenic LTR10B1|LTR|ERV1 -10650 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 680-110 chr7 48633950 48634306 + 2 NA intron (NM_152701, intron 59 of 61) L1M4b|LINE|L1 -290419 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 216-8 chr1 80080178 80080290 + 2 NA Intergenic Intergenic -455521 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 230-311 chr5 123110887 123111054 + 2 NA intron (NM_001136239, intron 3 of 7) intron (NM_001136239, intron 3 of 7) -20654 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 226-206 chr21 23535931 23536105 + 2 NA Intergenic Intergenic -151183 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 219-147 chr18 67843271 67843428 + 2 NA intron (NR_033921, intron 3 of 4) intron (NR_033921, intron 3 of 4) -28527 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 401-298 chr7 46963797 46964153 + 2 NA Intergenic L1MB5|LINE|L1 -266853 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 301-99 chr12 85715288 85715540 + 2 NA Intergenic L1M4|LINE|L1 120995 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 422-280 chr7 42181167 42181429 + 2 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 55911 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 471-274 chr8 132048148 132048493 + 2 NA intron (NM_001080399, intron 2 of 13) intron (NM_001080399, intron 2 of 13) 11062 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 307-236 chr2 60812166 60812331 + 2 NA Intergenic MER21A|LTR|ERVL 55980 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 240-231 chr2 136593630 136593811 + 2 NA Intergenic L1M4c|LINE|L1 -171825 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 524-156 chr3 122111829 122112235 + 2 NA intron (NM_001206925, intron 4 of 5) intron (NM_001206925, intron 4 of 5) 34183 NM_006889 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 331-154 chr14 54146305 54146626 + 2 NA Intergenic L1PBa|LINE|L1 -189574 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 154-4 chr1 101573674 101573792 + 2 NA Intergenic Intergenic 249896 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 448-21 chr1 196290758 196291131 + 2 NA intron (NM_001287820, intron 20 of 26) L2|LINE|L2 -202229 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 577-155 chr5 118341879 118342408 + 2 NA Intergenic L2a|LINE|L2 59569 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 558-122 chr21 23332730 23333112 + 2 NA Intergenic L1MC4|LINE|L1 51914 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 230-334 chr6 164189678 164189873 + 2 NA Intergenic Intergenic -518291 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 486-195 chr3 5288576 5288899 + 2 NA Intergenic L1PB|LINE|L1 -38482 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 306-3 chr1 33204369 33204529 + 2 NA Intergenic L1MA9|LINE|L1 -22406 NM_018207 55223 Hs.656006 NM_018207 ENSG00000116525 TRIM62 DEAR1 tripartite motif containing 62 protein-coding 440-275 chrX 13401638 13402013 + 2 NA Intergenic Intergenic 66584 NR_045260 100133123 Hs.449499 NR_045260 ENSG00000226985 LINC01203 - long intergenic non-protein coding RNA 1203 ncRNA 319-467 chr6 101090771 101090966 + 2 NA Intergenic L1M2|LINE|L1 -209496 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 328-12 chr1 76100232 76100435 + 2 NA intron (NM_001349108, intron 1 of 3) L1ME3B|LINE|L1 25587 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 267-129 chr15 94982715 94982887 + 2 NA Intergenic Intergenic 127438 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 523-36 chr10 67171877 67172304 + 2 NA intron (NM_001127384, intron 7 of 17) L2c|LINE|L2 159824 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 362-333 chr5 7163744 7164006 + 2 NA Intergenic Intergenic 105479 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 270-194 chr2 148090488 148090719 + 2 NA intron (NM_018328, intron 2 of 14) L1PB1|LINE|L1 -68999 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 714-51 chr4 45759487 45760101 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 364260 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 323-7 chr1 52116184 52116366 + 2 NA Intergenic Intergenic -25814 NM_007324 9372 Hs.532345 NM_004799 ENSG00000157077 ZFYVE9 MADHIP|NSP|PPP1R173|SARA|SMADIP zinc finger FYVE-type containing 9 protein-coding 815-42 chr8 86251130 86251742 + 2 NA Intergenic L1MA1|LINE|L1 -21055 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 258-308 chr5 12829082 12829221 + 2 NA Intergenic L1ME3A|LINE|L1 161292 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 467-239 chr6 8969411 8969698 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 317345 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 573-93 chr2 78538174 78538719 + 2 NA Intergenic L1MD2|LINE|L1 -7085 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 445-101 chr18 22636473 22636792 + 2 NA Intergenic L1ME3B|LINE|L1 150205 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 329-295 chr2 159829274 159829534 + 2 NA intron (NM_002349, intron 28 of 34) intron (NM_002349, intron 28 of 34) -31149 NM_001198763 9936 Hs.130014 NM_014880 ENSG00000241399 CD302 BIMLEC|CLEC13A|DCL-1|DCL1 CD302 molecule protein-coding 504-241 chr7 54408894 54409233 + 2 NA Intergenic Intergenic 78366 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 248-327 chr5 121256062 121256277 + 2 NA Intergenic L1MEc|LINE|L1 -66381 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 390-199 chr2 157915643 157915878 + 2 NA Intergenic Intergenic -39430 NM_001111067 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 557-140 chr3 141548713 141549125 + 2 NA intron (NM_006506, intron 5 of 23) L2|LINE|L2 61892 NM_001303245 5922 Hs.98445 NM_006506 ENSG00000155903 RASA2 GAP1M RAS p21 protein activator 2 protein-coding 574-30 chr12 66385749 66386147 + 2 NA intron (NM_001366722, intron 19 of 24) Charlie8|DNA|hAT-Charlie 83403 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 122-58 chr9 90119542 90119618 + 2 NA Intergenic L1ME3|LINE|L1 -78081 NR_038882 286370 Hs.407589 NR_038882 ENSG00000227555 MIR4290HG - MIR4290 host gene ncRNA 511-54 chr12 116604087 116604480 + 2 NA Intergenic Intergenic 44902 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 148-98 chr9 10894288 10894397 + 2 NA Intergenic Intergenic 281136 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 303-99 chr12 132885711 132885913 + 2 NA intron (NM_018223, intron 2 of 17) intron (NM_018223, intron 2 of 17) 1806 NM_001161346 55743 Hs.720197 NM_018223 ENSG00000072609 CHFR RNF116|RNF196 checkpoint with forkhead and ring finger domains protein-coding 347-34 chr1 219892976 219893177 + 2 NA Intergenic L1MB1|LINE|L1 35575 NR_046437 55532 Hs.284450 NM_018713 ENSG00000196660 SLC30A10 HMDPC|HMNDYT1|ZNT10|ZNT8|ZRC1|ZnT-10 solute carrier family 30 member 10 protein-coding 309-243 chr2 38817907 38818176 + 2 NA intron (NM_001329963, intron 19 of 23) intron (NM_001329963, intron 19 of 23) 39831 NM_024775 79833 Hs.143818 NM_024775 ENSG00000152147 GEMIN6 - gem nuclear organelle associated protein 6 protein-coding 509-119 chr2 144035962 144036309 + 2 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 99068 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 428-211 chr4 70354110 70354366 + 2 NA Intergenic Intergenic -6522 NM_012390 26952 Hs.701334 NM_012390 ENSG00000109208 SMR3A P-B1|PBI|PRL5|PROL5 submaxillary gland androgen regulated protein 3A protein-coding 292-73 chr11 47984244 47984471 + 2 NA intron (NM_001098503, intron 1 of 8) intron (NM_001098503, intron 1 of 8) 3798 NM_001098503 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 155-60 chr21 27160439 27160584 + 2 NA Intergenic Intergenic -193423 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 289-37 chr1 218805834 218806036 + 2 NA intron (NR_031644, intron 5 of 6) intron (NR_031644, intron 5 of 6) 112576 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 119-63 chrX 74743961 74744074 + 2 NA exon (NM_001008537, exon 3 of 4) exon (NM_001008537, exon 3 of 4) -129393 NM_016120 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 345-550 chr9 28107283 28107481 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -533516 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 251-234 chr3 65685330 65685490 + 2 NA intron (NM_001365904, intron 1 of 24) L1ME4a|LINE|L1 -208406 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 337-294 chr2 210119077 210119335 + 2 NA intron (NM_001307976, intron 3 of 13) AluSc|SINE|Alu 52203 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 291-223 chr2 103184635 103184787 + 2 NA Intergenic L1MDa|LINE|L1 -200282 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 195-100 chr2 9973721 9973849 + 2 NA intron (NM_198182, intron 8 of 15) intron (NM_198182, intron 8 of 15) 22092 NM_198182 29841 Hs.418493 NM_198182 ENSG00000134317 GRHL1 LBP32|MGR|NH32|TFCP2L2 grainyhead like transcription factor 1 protein-coding 558-178 chr5 112307784 112308213 + 2 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 79715 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 189-36 chr12 3347311 3347487 + 2 NA intron (NR_148995, intron 1 of 11) intron (NR_148995, intron 1 of 11) 18723 NR_148995 100128253 Hs.447497 NR_148995 LOC100128253 - uncharacterized LOC100128253 ncRNA 508-145 chr3 44596319 44596700 + 2 NA 3' UTR (NM_173658, exon 3 of 3) 3' UTR (NM_173658, exon 3 of 3) 11545 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 252-247 chr3 3876523 3876719 + 2 NA Intergenic Intergenic -75746 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 337-289 chr2 190490775 190491012 + 2 NA intron (NM_017694, intron 6 of 7) intron (NM_017694, intron 6 of 7) 43829 NR_136298 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 124-68 chr6 120488519 120488623 + 2 NA Intergenic Intergenic 473392 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 512-107 chr18 75755835 75756296 + 2 NA Intergenic Intergenic -43662 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 227-282 chr5 41420068 41420231 + 2 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 90452 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 318-570 chr9 29027975 29028228 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -139146 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 322-84 chr11 31984127 31984330 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X 57090 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 527-243 chr7 31435841 31436210 + 2 NA Intergenic L2|LINE|L2 -78046 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 540-24 chr1 236658534 236658967 + 2 NA Intergenic Intergenic -27704 NM_001103 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 571-133 chr5 45951132 45951571 + 2 NA Intergenic ALR/Alpha|Satellite|centr -254971 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 318-339 chr22 28367559 28367863 + 2 NA intron (NM_001145418, intron 2 of 22) L1M1|LINE|L1 -92158 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 186-108 chr3 63193323 63193494 + 2 NA Intergenic MIR|SINE|MIR -84900 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 251-273 chr4 117967514 117967734 + 2 NA Intergenic Intergenic -65698 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 528-243 chr8 17019992 17020350 + 2 NA Intergenic Intergenic -7067 NM_181723 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 477-173 chr2 224224589 224225009 + 2 NA Intergenic Intergenic 177195 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 123-13 chr12 20810355 20810467 + 2 NA promoter-TSS (NM_019844) promoter-TSS (NM_019844) -294 NM_019844 28234 Hs.504966 NM_019844 ENSG00000111700 SLCO1B3 HBLRR|LST-2|LST-3TM13|LST3|OATP-8|OATP1B3|OATP8|SLC21A8 solute carrier organic anion transporter family member 1B3 protein-coding 223-114 chr16 78817867 78818076 + 2 NA intron (NM_001291997, intron 7 of 7) LTR16A|LTR|ERVL 718317 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 289-246 chr2 165253802 165254024 + 2 NA intron (NM_001040143, intron 2 of 27) L1MC4|LINE|L1 12853 NM_001371247 469-287 chr8 113091182 113091556 + 2 NA intron (NM_001363185, intron 5 of 66) L1M1|LINE|L1 285783 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 142-72 chr7 52786077 52786161 + 2 NA Intergenic Intergenic -249514 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 485-246 chr6 78749310 78749636 + 2 NA Intergenic L1MEg|LINE|L1 -118078 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 328-489 chr6 37863147 37863390 + 2 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 43541 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 371-221 chr20 52056246 52056439 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 49142 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 483-64 chr14 62232906 62233379 + 2 NA Intergenic L1M4|LINE|L1 -93169 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 297-440 chr7 62887051 62887249 + 2 NA Intergenic ALR/Alpha|Satellite|centr 416906 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 611-80 chr2 153448199 153448743 + 2 NA Intergenic Intergenic 30291 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 687-66 chr2 141141199 141141592 + 2 NA intron (NM_018557, intron 7 of 90) intron (NM_018557, intron 7 of 90) -554710 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 339-468 chr5 151300741 151300981 + 2 NA intron (NM_181774, intron 1 of 9) intron (NM_181774, intron 1 of 9) 2905 NM_181774 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 269-325 chr5 145083839 145084070 + 2 NA Intergenic Intergenic 751388 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 348-421 chr5 108376076 108376366 + 2 NA intron (NM_001163315, intron 1 of 8) L1M4|LINE|L1 5877 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 308-285 chr3 7480839 7481070 + 2 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) 54330 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 436-120 chr19 28664499 28664897 + 2 NA intron (NR_110759, intron 5 of 9) L1MA5|LINE|L1 58010 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 284-247 chr21 31055816 31056000 + 2 NA Intergenic Intergenic -17432 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 388-25 chr1 194965365 194965707 + 2 NA Intergenic Intergenic 1123179 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 530-226 chr7 16735259 16735656 + 2 NA Intergenic Intergenic -18298 NM_014399 27075 Hs.364544 NM_014399 ENSG00000106537 TSPAN13 NET-6|NET6|TM4SF13 tetraspanin 13 protein-coding 276-306 chr3 130919281 130919539 + 2 NA intron (NM_001001485, intron 2 of 27) AluSq2|SINE|Alu 24820 NM_001001486 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 360-248 chr2 187350522 187350874 + 2 NA intron (NM_001369434, intron 15 of 15) intron (NM_001369434, intron 15 of 15) 97554 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 270-11 chr1 91449475 91449705 + 2 NA Intergenic Intergenic -44753 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 254-241 chr3 59599769 59599948 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 58639 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 420-86 chr14 90503084 90503355 + 2 NA Intergenic Intergenic 13990 NR_135274 105370619 Hs.525530 NR_135274 LOC105370619 - uncharacterized LOC105370619 ncRNA 339-11 chr1 60196954 60197139 + 2 NA Intergenic Intergenic -123276 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 413-163 chr20 13354063 13354423 + 2 NA Intergenic HAL1|LINE|L1 -114556 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 151-49 chr22 26626900 26627006 + 2 NA intron (NM_001886, intron 4 of 5) L1MC3|LINE|L1 4990 NM_001886 1413 Hs.57690 NM_001886 ENSG00000196431 CRYBA4 CTRCT23|CYRBA4|MCOPCT4 crystallin beta A4 protein-coding 198-145 chr20 58569827 58569944 + 2 NA intron (NR_034147, intron 6 of 6) intron (NR_034147, intron 6 of 6) -54486 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 161-129 chr8 120931363 120931484 + 2 NA Intergenic Intergenic -119377 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 241-74 chr11 114869489 114869658 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 191046 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 541-245 chr8 130479679 130480054 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -36192 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 295-35 chr1 246981877 246982088 + 2 NA intron (NR_037894, intron 4 of 6) intron (NR_037894, intron 4 of 6) 26075 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 508-70 chr16 8408277 8408719 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 181340 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 277-258 chr3 81865875 81866040 + 2 NA Intergenic L2c|LINE|L2 -104312 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 372-438 chr6 98585610 98585918 + 2 NA Intergenic MIRc|SINE|MIR 245936 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 373-422 chr8 123371035 123371341 + 2 NA intron (NM_014109, intron 5 of 27) intron (NM_014109, intron 5 of 27) -23058 NR_030382 693130 NR_030382 ENSG00000283172 MIR548D1 MIRN548D1 microRNA 548d-1 ncRNA 428-76 chr15 46802718 46803026 + 2 NA Intergenic Intergenic -381217 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 322-572 chr9 118545983 118546295 + 2 NA Intergenic L1PA15|LINE|L1 -133532 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 112-52 chr8 114531877 114531962 + 2 NA Intergenic Intergenic -1094980 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 525-15 chr1 194932972 194933372 + 2 NA Intergenic L1PA16|LINE|L1 1155543 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 455-182 chr4 51915152 51915571 + 2 NA 3' UTR (NM_001287757, exon 12 of 12) 3' UTR (NM_001287757, exon 12 of 12) 71782 NM_001287755 23142 Hs.605388 NM_015115 ENSG00000109184 DCUN1D4 - defective in cullin neddylation 1 domain containing 4 protein-coding 483-174 chr3 118329454 118329913 + 2 NA Intergenic L1MA9|LINE|L1 -312085 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 460-59 chr12 14438342 14438653 + 2 NA intron (NM_181352, intron 5 of 14) MLT1C|LTR|ERVL-MaLR 53216 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 491-83 chr16 63183229 63183557 + 2 NA Intergenic L1ME1|LINE|L1 -1146955 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 511-105 chr19 31436790 31437208 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -87563 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 192-15 chr1 239772890 239773048 + 2 NA intron (NM_000740, intron 3 of 4) L2a|LINE|L2 -53850 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 386-371 chr9 8583707 8583986 + 2 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 150100 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 699-41 chr17 38995033 38995643 + 2 NA Intergenic AluJr|SINE|Alu -27935 NM_001008777 494188 Hs.549536 NM_001008777 ENSG00000204952 FBXO47 - F-box protein 47 protein-coding 271-208 chr2 120651936 120652109 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -83846 NM_001371271 253-419 chr8 128246035 128246173 + 2 NA Intergenic L1MB2|LINE|L1 95988 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 281-53 chr10 115660803 115661019 + 2 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 533878 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 363-424 chr7 91723572 91723850 + 2 NA Intergenic L1MA4|LINE|L1 156991 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 229-80 chr11 125535793 125535911 + 2 NA Intergenic MER4D1|LTR|ERV1 -33625 NR_110769 9538 Hs.643514 NM_004879 ENSG00000149547 EI24 EPG4|PIG8|TP53I8 EI24 autophagy associated transmembrane protein protein-coding 404-241 chr4 148811345 148811646 + 2 NA Intergenic Intergenic 130883 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 310-414 chr5 93441533 93441716 + 2 NA intron (NR_021491, intron 4 of 5) intron (NR_021491, intron 4 of 5) 129719 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 341-321 chr3 7004916 7005119 + 2 NA intron (NM_000844, intron 1 of 9) Charlie17b|DNA|hAT-Charlie -111000 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 319-165 chr15 97667189 97667495 + 2 NA Intergenic L1ME3C|LINE|L1 -106644 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 253-391 chr7 93522121 93522304 + 2 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 37598 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 203 chr1 12669576 12669681 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 25081 NM_001013630 343066 Hs.209954 NM_001013630 ENSG00000204518 AADACL4 - arylacetamide deacetylase like 4 protein-coding 436-339 chrX 84678187 84678520 + 2 NA Intergenic L1MA6|LINE|L1 -175900 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 567-107 chr22 40768914 40769327 + 2 NA TTS (NM_001282727) TTS (NM_001282727) 44838 NR_039923 100616283 NR_039923 ENSG00000266594 MIR4766 mir-4766 microRNA 4766 ncRNA 356-135 chr13 104979767 104979985 + 2 NA Intergenic Intergenic -485991 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 223-50 chr11 30383522 30383645 + 2 NA TTS (NM_001145399) TTS (NM_001145399) 60479 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 558-79 chr18 13163675 13164051 + 2 NA Intergenic LTR37-int|LTR|ERV1 -54897 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 218-306 chr7 80530020 80530159 + 2 NA Intergenic MER115|DNA|hAT-Tip100 -18025 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 543-35 chr10 56054022 56054447 + 2 NA Intergenic L1M4|LINE|L1 307025 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 267-220 chr2 209906771 209906964 + 2 NA intron (NM_032504, intron 28 of 63) intron (NM_032504, intron 28 of 63) -95698 NM_006916 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 500-59 chr11 114300050 114300516 + 2 NA intron (NM_006169, intron 2 of 2) L1MEf|LINE|L1 4470 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 268-223 chr20 13681720 13681902 + 2 NA Intergenic Intergenic -42875 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 283-33 chr1 210878033 210878255 + 2 NA intron (NM_002238, intron 7 of 10) L1MC1|LINE|L1 255230 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 493-44 chr11 48281144 48281479 + 2 NA Intergenic L1PB1|LINE|L1 17450 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 359-123 chr12 94355125 94355312 + 2 NA intron (NR_160431, intron 7 of 12) AluY|SINE|Alu 92697 NR_037687 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 295-486 chr8 137195424 137195589 + 2 NA Intergenic Intergenic 218082 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 553-207 chr6 78223552 78223937 + 2 NA Intergenic L1MEg|LINE|L1 315565 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 424-103 chr17 72294938 72295310 + 2 NA Intergenic Intergenic -47687 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 366-466 chr9 24538619 24538982 + 2 NA Intergenic L1M5|LINE|L1 6876 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 366-338 chr5 24010881 24011191 + 2 NA intron (NR_131245, intron 4 of 4) L1MA3|LINE|L1 59688 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 572-66 chr16 66287809 66288164 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -78705 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 316-161 chr14 34284456 34284701 + 2 NA Intergenic MLT2B3|LTR|ERVL 177662 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 384-271 chr4 103080562 103080943 + 2 NA intron (NM_020139, intron 9 of 9) intron (NM_020139, intron 9 of 9) -3433 NM_001370207 133308 Hs.546482 NM_178833 ENSG00000164038 SLC9B2 NHA2|NHE10|NHEDC2 solute carrier family 9 member B2 protein-coding 433-113 chr17 68551709 68552073 + 2 NA TTS (NM_001276290) TTS (NM_001276290) 6536 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 480-301 chr8 125758311 125758686 + 2 NA Intergenic Intergenic 192699 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 348-466 chr6 118943381 118943577 + 2 NA Intergenic L1M1|LINE|L1 -8317 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 291-129 chr14 68209758 68209955 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 386264 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 390-331 chr6 92950848 92951186 + 2 NA Intergenic L1MEi|LINE|L1 468542 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 261-314 chr5 68691362 68691617 + 2 NA Intergenic L1ME3C|LINE|L1 338438 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 227-43 chr10 66853928 66854123 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -72011 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 396-4 chr1 33548667 33548979 + 2 NA intron (NM_052896, intron 55 of 69) intron (NM_052896, intron 55 of 69) 76178 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 371-356 chr7 28378779 28379004 + 2 NA intron (NM_182899, intron 1 of 9) L3|LINE|CR1 -33627 NM_182898 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 462-95 chr16 6602479 6602825 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -171157 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 433-86 chr14 87433858 87434261 + 2 NA Intergenic MER110|LTR|ERV1 221235 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 425-231 chr5 52062106 52062435 + 2 NA Intergenic L1MC2|LINE|L1 54239 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 258-422 chr9 28950732 28950894 + 2 NA intron (NM_001354574, intron 1 of 5) L1P3|LINE|L1 -61858 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 370-306 chr3 28041247 28041529 + 2 NA Intergenic Intergenic -200231 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 227-188 chr2 165057382 165057554 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -101943 NM_001351539 151258 Hs.658702 NM_173512 ENSG00000169507 SLC38A11 AVT2 solute carrier family 38 member 11 protein-coding 600-123 chr8 35828941 35829464 + 2 NA Intergenic LTR7|LTR|ERV1 -118882 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 230-370 chr8 65779922 65780100 + 2 NA intron (NM_001242318, intron 2 of 12) intron (NM_001242318, intron 2 of 12) 9046 NM_002603 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 490-246 chr6 113917703 113918129 + 2 NA intron (NR_027060, intron 2 of 3) MIRb|SINE|MIR 13529 NR_027060 285759 Hs.376634 NM_173673 ENSG00000175967 FLJ34503 - uncharacterized FLJ34503 ncRNA 698-33 chr18 61466181 61466655 + 2 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 132988 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 267-146 chr17 54846660 54846882 + 2 NA Intergenic Intergenic -53920 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 1216-6 chr3 134595241 134596045 + 2 NA Intergenic Intergenic 55375 NM_001366276 339855 Hs.146730 NM_178554 ENSG00000174611 KY MFM7 kyphoscoliosis peptidase protein-coding 270-141 chr16 51011340 51011587 + 2 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -6295 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 414-160 chr2 115737518 115737781 + 2 NA intron (NM_001321912, intron 9 of 25) ERVL-E-int|LTR|ERVL 393834 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 185-198 chr8 72354280 72354403 + 2 NA Intergenic Intergenic -102707 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 276-191 chr17 60863179 60863364 + 2 NA intron (NM_001330413, intron 7 of 25) L1ME1|LINE|L1 185420 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 241-80 chr12 22061283 22061502 + 2 NA exon (NM_018686, exon 6 of 8) exon (NM_018686, exon 6 of 8) 15174 NM_018686 55907 Hs.311346 NM_018686 ENSG00000111726 CMAS CSS cytidine monophosphate N-acetylneuraminic acid synthetase protein-coding 307-27 chr1 172668178 172668427 + 2 NA Intergenic MER20|DNA|hAT-Charlie 9199 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 282-426 chr7 53430104 53430339 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 381710 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 340-241 chr2 30670604 30670888 + 2 NA Intergenic L1MCc|LINE|L1 136700 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 636-139 chr7 82305562 82306020 + 2 NA intron (NM_000722, intron 3 of 38) LTR49|LTR|ERV1 137986 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 604-76 chr2 16962572 16962936 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -296920 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 207-58 chr11 109333536 109333692 + 2 NA Intergenic Intergenic -88576 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 537-280 chrX 45399050 45399513 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -106107 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 330-470 chr6 148667371 148667632 + 2 NA Intergenic L1MA4|LINE|L1 -79529 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 494-259 chr6 163009690 163010013 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 44310 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 288-299 chr4 65615035 65615186 + 2 NA intron (NM_001281767, intron 2 of 16) intron (NM_001281767, intron 2 of 16) 54378 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 240-5 chr1 27988157 27988332 + 2 NA TTS (NR_104214) TTS (NR_104214) 28782 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 311-374 chr4 57743920 57744188 + 2 NA Intergenic L1PA10|LINE|L1 318182 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 430-344 chrX 83019422 83019784 + 2 NA Intergenic L1M4|LINE|L1 -488687 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 285-392 chr7 98632784 98632994 + 2 NA Intergenic L1M4|LINE|L1 15604 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 444-268 chr8 126213722 126214117 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -111576 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 359-104 chr11 123850102 123850281 + 2 NA Intergenic L1PA13|LINE|L1 35479 NM_001013743 338661 Hs.98377 NM_001013743 ENSG00000204300 TMEM225 PMP22CD|PPP1R154|SPATA47 transmembrane protein 225 protein-coding 214-351 chr9 28245491 28245603 + 2 NA intron (NM_152570, intron 5 of 6) L1PA10|LINE|L1 473758 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 539-162 chr5 18075546 18075991 + 2 NA Intergenic Intergenic 268494 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 328-510 chr6 104380956 104381128 + 2 NA Intergenic L1PA17|LINE|L1 478504 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 264-371 chr6 140324178 140324382 + 2 NA Intergenic MER21B|LTR|ERVL 119028 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 392-128 chr18 74200343 74200590 + 2 NA Intergenic Intergenic 51943 NM_014177 29090 Hs.532835 NM_014177 ENSG00000075336 TIMM21 C18orf55|HSPC154|TIM21 translocase of inner mitochondrial membrane 21 protein-coding 193-207 chr8 133541582 133541773 + 2 NA intron (NM_003033, intron 2 of 8) intron (NM_003033, intron 2 of 8) 30210 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 527-269 chr8 112874693 112875067 + 2 NA intron (NM_001363185, intron 8 of 66) L1PA7|LINE|L1 231387 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 370-174 chr16 83700610 83700821 + 2 NA intron (NM_001220489, intron 9 of 12) HAL1b|LINE|L1 103261 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 412-57 chr11 108573201 108573592 + 2 NA intron (NM_015065, intron 1 of 5) intron (NM_015065, intron 1 of 5) 20372 NM_001308019 23086 Hs.28540 NM_015065 ENSG00000110723 EXPH5 SLAC2-B|SLAC2B exophilin 5 protein-coding 533-220 chr7 89415962 89416271 + 2 NA Intergenic L1MC3|LINE|L1 -620379 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 338-558 chr8 116727907 116728077 + 2 NA intron (NM_003756, intron 1 of 7) intron (NM_003756, intron 1 of 7) 27831 NM_003756 8667 Hs.492599 NM_003756 ENSG00000147677 EIF3H EIF3S3|eIF3-gamma|eIF3-p40 eukaryotic translation initiation factor 3 subunit H protein-coding 279-34 chr10 44423847 44424119 + 2 NA Intergenic Intergenic -38886 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 199-116 chr2 77217754 77217890 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 231857 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 329-383 chr3 134129237 134129416 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -71678 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 426-50 chr11 83834005 83834299 + 2 NA intron (NM_001142699, intron 16 of 27) intron (NM_001142699, intron 16 of 27) -151727 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 170-139 chr8 89102983 89103143 + 2 NA Intergenic L1MB1|LINE|L1 654648 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 382-282 chr4 2421926 2422126 + 2 NA intron (NM_001193282, intron 1 of 15) AluJr|SINE|Alu 3071 NM_001193282 402160 Hs.443116 NM_001193282 ENSG00000206113 CFAP99 - cilia and flagella associated protein 99 protein-coding 317-453 chr7 52195007 52195224 + 2 NA Intergenic L1MB3|LINE|L1 -801859 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 323-236 chr2 35335677 35335991 + 2 NA Intergenic MER65A|LTR|ERV1 -135571 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 618-88 chr3 183098631 183099217 + 2 NA non-coding (NR_120640, exon 1 of 19) non-coding (NR_120640, exon 1 of 19) 319 NR_120640 56922 Hs.47649 NM_020166 ENSG00000078070 MCCC1 MCC-B|MCCA methylcrotonoyl-CoA carboxylase 1 protein-coding 356-413 chr5 143460031 143460335 + 2 NA Intergenic L1MC3|LINE|L1 -24671 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 300-103 chr13 94007250 94007438 + 2 NA intron (NM_005708, intron 3 of 8) L2a|LINE|L2 -148871 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 328-14 chr1 88424117 88424430 + 2 NA Intergenic L1M2|LINE|L1 -259871 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 200-89 chr15 94908181 94908350 + 2 NA Intergenic L1PA16|LINE|L1 52902 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 321-337 chr20 55840288 55840488 + 2 NA Intergenic L1MB1|LINE|L1 165131 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 351-202 chr2 7779532 7779729 + 2 NA Intergenic Intergenic 120025 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 396-301 chr5 162746370 162746576 + 2 NA Intergenic L1MA9|LINE|L1 678831 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 408-194 chr21 20502317 20502592 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -243769 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 243-207 chr2 58141322 58141523 + 2 NA intron (NM_001130483, intron 11 of 13) intron (NM_001130483, intron 11 of 13) 94710 NM_001130481 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 248-431 chr9 79068813 79068973 + 2 NA Intergenic Intergenic 76773 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 334-200 chr16 76707700 76707923 + 2 NA Intergenic Intergenic 72813 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 287-83 chr11 28772492 28772695 + 2 NA Intergenic L1M2|LINE|L1 -295045 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 483-226 chr6 54319599 54320001 + 2 NA intron (NM_014464, intron 1 of 10) intron (NM_014464, intron 1 of 10) 11359 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 333-217 chr19 56426957 56427262 + 2 NA 3' UTR (NM_001159861, exon 5 of 5) 3' UTR (NM_001159861, exon 5 of 5) 22777 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 364-437 chr8 71125812 71126056 + 2 NA Intergenic AluJb|SINE|Alu 230772 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 267-65 chr11 50680059 50680202 + 2 NA Intergenic ALR/Alpha|Satellite|centr 270983 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 267-185 chr2 56781576 56781759 + 2 NA Intergenic L1ME1|LINE|L1 -595897 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 281-114 chr14 47807497 47807698 + 2 NA Intergenic MIRb|SINE|MIR -12583 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 243-127 chr14 60429270 60429475 + 2 NA Intergenic L1MA4A|LINE|L1 56691 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 342-91 chr11 36841871 36842068 + 2 NA Intergenic MIR|SINE|MIR -243690 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 498-52 chr11 81364392 81364689 + 2 NA Intergenic Intergenic 526296 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 352-519 chr8 37751794 37752082 + 2 NA intron (NM_007175, intron 10 of 11) L2c|LINE|L2 -3892 NR_003671 728024 Hs.647135 NR_003671 LOC728024 - chromosome X open reading frame 56 pseudogene pseudo 320-208 chr17 58144264 58144578 + 2 NA Intergenic AluJr4|SINE|Alu -10733 NM_012374 26689 Hs.531188 NM_012374 ENSG00000141194 OR4D1 OR17-23|OR4D3|OR4D4P|TPCR16 olfactory receptor family 4 subfamily D member 1 protein-coding 525-100 chr19 27387079 27387463 + 2 NA Intergenic ALR/Alpha|Satellite|centr -406160 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 364-72 chr10 105935218 105935436 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -114994 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 290-177 chr18 341754 342028 + 2 NA intron (NM_130386, intron 5 of 9) intron (NM_130386, intron 5 of 9) -73844 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 360-341 chr5 3018396 3018676 + 2 NA Intergenic L1ME2|LINE|L1 100682 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 290-448 chr8 87275920 87276148 + 2 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 409619 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 312-408 chr5 27749319 27749560 + 2 NA Intergenic L1PA17|LINE|L1 277147 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 311-376 chr4 63422446 63422731 + 2 NA Intergenic Intergenic 986862 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 313-531 chr8 91826305 91826569 + 2 NA Intergenic Intergenic 191243 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 180-37 chr12 52338102 52338259 + 2 NA Intergenic (ACAAA)n|Simple_repeat|Simple_repeat -16782 NM_002282 3889 Hs.720768 NM_002282 ENSG00000170523 KRT83 EKVP5|HB3|Hb-3|KRTHB3|MNLIX keratin 83 protein-coding 303-193 chr2 6553732 6553981 + 2 NA Intergenic Intergenic 79931 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 378-70 chr10 121198836 121199147 + 2 NA Intergenic Intergenic 332323 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 291 chr1 37214955 37215181 + 2 NA Intergenic L1MA7|LINE|L1 53505 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 288-408 chr7 51614614 51614874 + 2 NA Intergenic Intergenic -221488 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 200-285 chr9 27837093 27837219 + 2 NA Intergenic Intergenic -263290 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 343-180 chr16 48775307 48775607 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -165277 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 247-174 chr19 12531632 12531809 + 2 NA intron (NM_144976, intron 1 of 3) L1MC2|LINE|L1 19762 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 268-141 chr16 26412774 26412972 + 2 NA Intergenic L1MC3|LINE|L1 387636 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 286-115 chr14 44951685 44951880 + 2 NA intron (NM_017658, intron 1 of 4) intron (NM_017658, intron 1 of 4) 9703 NM_001308112 54813 Hs.550906 NM_017658 ENSG00000179454 KLHL28 BTBD5 kelch like family member 28 protein-coding 242-410 chr8 121989210 121989358 + 2 NA Intergenic AluSx|SINE|Alu -347844 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 713-22 chr13 96393187 96393822 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) -33725 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 556-233 chr8 124645571 124645920 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 82728 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 418-133 chr2 204156853 204157167 + 2 NA Intergenic L2c|LINE|L2 220262 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 609-49 chr19 51855435 51855871 + 2 NA 3' UTR (NM_001370457, exon 7 of 7) 3' UTR (NM_001370457, exon 7 of 7) 32283 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 366-25 chr1 169039416 169039679 + 2 NA intron (NR_104091, intron 3 of 4) L1MA4|LINE|L1 47458 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 536-7 chr1 74127126 74127498 + 2 NA intron (NM_001105659, intron 4 of 7) L1MA3|LINE|L1 70864 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 165-138 chr9 80463126 80463247 + 2 NA Intergenic Intergenic 488163 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 315-391 chr5 100490152 100490386 + 2 NA Intergenic L1MA9|LINE|L1 -45105 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 487-248 chr6 82931711 82932171 + 2 NA intron (NR_146807, intron 10 of 10) THE1C|LTR|ERVL-MaLR 133900 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 526-232 chr7 116081509 116081935 + 2 NA Intergenic Intergenic -50959 NM_012252 22797 Hs.125962 NM_012252 ENSG00000105967 TFEC TCFEC|TFE-C|TFEC-L|TFECL|bHLHe34|hTFEC-L transcription factor EC protein-coding 132-50 chr3 38997428 38997558 + 2 NA intron (NM_001349253, intron 2 of 29) L2a|LINE|L2 -46932 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 248-379 chr7 52871404 52871585 + 2 NA Intergenic L1M2|LINE|L1 -164139 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 433-237 chr5 161202193 161202466 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -263703 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 722-30 chr14 60850543 60851080 + 2 NA intron (NM_002431, intron 6 of 7) intron (NM_002431, intron 6 of 7) 116050 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 618-5 chr1 76399807 76400225 + 2 NA intron (NM_001349111, intron 3 of 5) L1ME2z|LINE|L1 325270 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 279-58 chr10 113624732 113624920 + 2 NA exon (NM_006175, exon 21 of 41) exon (NM_006175, exon 21 of 41) 39215 NM_001322945 4892 Hs.268788 NM_006175 ENSG00000197893 NRAP N-RAP nebulin related anchoring protein protein-coding 267-2 chr1 29420221 29420390 + 2 NA Intergenic L1MA4A|LINE|L1 -70191 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 265-185 chr2 78746178 78746391 + 2 NA Intergenic Intergenic 200753 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 328-118 chr12 108088023 108088259 + 2 NA Intergenic L1MC3|LINE|L1 -41147 NM_014653 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 310-540 chr8 130785598 130785809 + 2 NA intron (NM_001115, intron 15 of 17) intron (NM_001115, intron 15 of 17) 255206 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 175-177 chr8 143944829 143944993 + 2 NA promoter-TSS (NM_201381) promoter-TSS (NM_201381) -141 NM_201381 5339 Hs.434248 NM_000445 ENSG00000178209 PLEC EBS1|EBSMD|EBSND|EBSO|EBSOG|EBSPA|HD1|LGMD2Q|LGMDR17|PCN|PLEC1|PLEC1b|PLTN plectin protein-coding 454-117 chr17 30871693 30872100 + 2 NA intron (NM_024857, intron 14 of 22) L1MC5a|LINE|L1 34342 NM_024683 79736 Hs.317340 NM_024683 ENSG00000172171 TEFM C17orf42 transcription elongation factor, mitochondrial protein-coding 171-79 chr3 65332936 65333091 + 2 NA Intergenic MIRc|SINE|MIR -560803 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 249-66 chr11 7411223 7411428 + 2 NA intron (NM_175733, intron 3 of 6) L1MA4A|LINE|L1 54510 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 245-343 chr8 76742206 76742379 + 2 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -59017 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 352-130 chr13 104871300 104871641 + 2 NA Intergenic Intergenic -594397 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 338-446 chr5 124433253 124433519 + 2 NA intron (NR_125774, intron 3 of 5) (AT)n|Simple_repeat|Simple_repeat 5134 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 211-150 chr2 154034913 154035057 + 2 NA intron (NM_052917, intron 3 of 12) L1M2|LINE|L1 90591 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 347-212 chr2 56070235 56070536 + 2 NA Intergenic L1MA5|LINE|L1 19997 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 211-88 chr14 73763893 73764095 + 2 NA intron (NM_001043318, intron 1 of 11) intron (NM_001043318, intron 1 of 11) -3691 NM_001367710 91748 Hs.594157 NM_194278 ENSG00000156030 ELMSAN1 C14orf117|C14orf43|LSR68|MIDEAS|c14_5541 ELM2 and Myb/SANT domain containing 1 protein-coding 565-32 chr12 33280757 33281215 + 2 NA Intergenic LTR9|LTR|ERV1 158833 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 212-271 chr5 162758646 162758800 + 2 NA Intergenic MIRb|SINE|MIR -678848 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 291-49 chr10 53665005 53665222 + 2 NA Intergenic MER50|LTR|ERV1 -821117 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 772-9 chr11 35388364 35389111 + 2 NA intron (NM_001252652, intron 1 of 11) intron (NM_001252652, intron 1 of 11) 30821 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 249-387 chr7 62965719 62965937 + 2 NA Intergenic ALR/Alpha|Satellite|centr 338228 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 276-298 chr3 80756118 80756280 + 2 NA Intergenic Intergenic -8698 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 344-376 chr5 26631632 26631850 + 2 NA Intergenic Intergenic 406845 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 297-485 chr8 109929437 109929719 + 2 NA Intergenic Intergenic 46193 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 195-82 chr17 42747658 42747769 + 2 NA Intergenic Intergenic -2673 NM_001321079 2145 Hs.194669 NM_001991 ENSG00000108799 EZH1 KMT6B enhancer of zeste 1 polycomb repressive complex 2 subunit protein-coding 313-52 chr10 70262812 70262992 + 2 NA intron (NM_022146, intron 2 of 3) AluJr|SINE|Alu 21102 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 639-119 chr8 136387876 136388359 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -142681 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 510-251 chr6 146177299 146177629 + 2 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 148266 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 365-84 chr11 133257593 133257811 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 274799 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 299-224 chr2 135354879 135355138 + 2 NA intron (NM_001286569, intron 3 of 21) A-rich|Low_complexity|Low_complexity 175577 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 374-62 chr12 1747592 1747862 + 2 NA intron (NM_024551, intron 1 of 7).2 L1M4b|LINE|L1 56657 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 309-579 chr9 97172316 97172543 + 2 NA intron (NR_136286, intron 13 of 17) AluSg|SINE|Alu -65997 NR_036526 100499484 Hs.435629 NR_036526 ENSG00000254876 SUGT1P4-STRA6LP - SUGT1P4-STRA6LP readthrough pseudo 341-251 chr2 72119255 72119560 + 2 NA Intergenic Intergenic 28455 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 525-38 chr11 20915715 20916224 + 2 NA intron (NM_201551, intron 5 of 18) intron (NM_201551, intron 5 of 18) 246383 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 388-228 chr3 87964660 87965016 + 2 NA intron (NM_001322210, intron 2 of 2) THE1B|LTR|ERVL-MaLR -17738 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 329-265 chr2 31761337 31761630 + 2 NA Intergenic L1MEd|LINE|L1 42497 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 166-42 chr18 52825397 52825498 + 2 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -411654 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 258-104 chr13 37352488 37352667 + 2 NA Intergenic L1MC|LINE|L1 132207 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 285-151 chr17 5188212 5188491 + 2 NA intron (NM_032530, intron 1 of 1) intron (NM_032530, intron 1 of 1) 3517 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 356-256 chr2 114285839 114286133 + 2 NA Intergenic Intergenic -156655 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 301-425 chr7 73944806 73944994 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -82889 NM_001278918 2006 Hs.647061 NM_000501 ENSG00000049540 ELN ADCL1|SVAS|WBS|WS elastin protein-coding 292-15 chr1 92023842 92024044 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -6042 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 263-130 chr16 35933249 35933446 + 2 NA Intergenic ALR/Alpha|Satellite|centr 186795 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 413-274 chr7 39184504 39184725 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) 144520 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 148-64 chr4 69903966 69904066 + 2 NA Intergenic L1MA1|LINE|L1 -27052 NM_001890 1446 Hs.3155 NM_001890 ENSG00000126545 CSN1S1 CASA|CSN1 casein alpha s1 protein-coding 304-559 chr9 122766325 122766619 + 2 NA Intergenic L1M4c|LINE|L1 16624 NM_001004453 392390 Hs.553790 NM_001004453 ENSG00000171459 OR1L6 HG16|OR1K1|OR1L7|OR9-30 olfactory receptor family 1 subfamily L member 6 protein-coding 416-311 chr7 55943923 55944266 + 2 NA Intergenic Intergenic -7783 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 635-85 chr5 16277992 16278445 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 97977 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 454-8 chr1 111111082 111111482 + 2 NA Intergenic L1ME1|LINE|L1 -28101 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 269-402 chr8 77444307 77444488 + 2 NA Intergenic MIR|SINE|MIR -6300 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 237-190 chr2 114951978 114952120 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -112524 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 294-190 chr19 52075263 52075420 + 2 NA intron (NM_001369830, intron 2 of 2) intron (NM_001369830, intron 2 of 2) 18930 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 320-32 chr1 184303656 184303865 + 2 NA Intergenic L1MA1|LINE|L1 -83269 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 396-70 chr11 32161865 32162116 + 2 NA Intergenic Intergenic -18078 NR_132770 106635521 NR_132770 SNORA88 - small nucleolar RNA, H/ACA box 88 snoRNA 338-422 chr5 32497080 32497416 + 2 NA Intergenic MER21A|LTR|ERVL -52508 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 274-366 chr7 124248642 124248830 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 103360 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 443-30 chr1 240583143 240583529 + 2 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 28819 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 230-69 chr11 120766802 120766979 + 2 NA intron (NM_001282470, intron 2 of 19) L1PA7|LINE|L1 52225 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 309-566 chr8 134414007 134414242 + 2 NA Intergenic L1MEh|LINE|L1 -183947 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 489-227 chr6 73404550 73404930 + 2 NA exon (NM_018665, exon 5 of 17) exon (NM_018665, exon 5 of 17) 9912 NM_018665 55510 Hs.125507 NM_018665 ENSG00000080007 DDX43 CT13|HAGE DEAD-box helicase 43 protein-coding 468-294 chr7 35591136 35591457 + 2 NA Intergenic AluSx|SINE|Alu 103839 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 243-176 chr18 22651801 22651967 + 2 NA Intergenic L1MB7|LINE|L1 134953 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 322-417 chr5 27620156 27620346 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 147959 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 480-162 chr2 166221534 166221968 + 2 NA intron (NM_001365536, intron 24 of 26) L1MB1|LINE|L1 -72590 NM_001353958 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 360-486 chr9 31434181 31434420 + 2 NA Intergenic L2a|LINE|L2 -52810 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 263-72 chr11 99705235 99705403 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 149174 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 461-118 chr2 16152896 16153285 + 2 NA Intergenic L2a|LINE|L2 102663 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 200-73 chr14 42327479 42327673 + 2 NA Intergenic Intergenic 720720 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 310-553 chr9 80417620 80417902 + 2 NA Intergenic L1PREC2|LINE|L1 442738 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 736-79 chr7 49931491 49932126 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 156475 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 266-245 chr3 48223320 48223523 + 2 NA promoter-TSS (NM_004345) promoter-TSS (NM_004345) -74 NM_004345 820 Hs.51120 NM_004345 ENSG00000164047 CAMP CAP-18|CAP18|CRAMP|FALL-39|FALL39|HSD26|LL37 cathelicidin antimicrobial peptide protein-coding 398-126 chr16 35836853 35837158 + 2 NA Intergenic Intergenic 90453 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 539-135 chr20 61477434 61477920 + 2 NA intron (NM_001794, intron 2 of 15) intron (NM_001794, intron 2 of 15) -21744 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 312-146 chr14 56156704 56156985 + 2 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 38433 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 281-248 chr2 235868863 235869065 + 2 NA intron (NM_001037131, intron 9 of 17) intron (NM_001037131, intron 9 of 17) 299422 NM_001485 2637 Hs.184945 NM_001485 ENSG00000168505 GBX2 - gastrulation brain homeobox 2 protein-coding 432-234 chr5 143047098 143047461 + 2 NA intron (NR_146198, intron 14 of 22) MIRb|SINE|MIR -145221 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 220-56 chr10 89268096 89268288 + 2 NA Intergenic MIR|SINE|MIR -16153 NM_001288979 3988 Hs.643030 NM_000235 ENSG00000107798 LIPA CESD|LAL lipase A, lysosomal acid type protein-coding 331-395 chr4 130323122 130323287 + 2 NA Intergenic L3|LINE|CR1 -53157 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 303-186 chr19 34525675 34525963 + 2 NA Intergenic AluSz|SINE|Alu 19567 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 248-115 chr14 59977267 59977486 + 2 NA intron (NR_075071, intron 14 of 32) intron (NR_075071, intron 14 of 32) 57663 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 574-133 chr4 167993761 167994327 + 2 NA Intergenic L1M1|LINE|L1 -98493 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 302-466 chr8 126516871 126517087 + 2 NA Intergenic Intergenic 41499 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 746-4 chr1 103781968 103782362 + 2 NA Intergenic Intergenic 32324 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 478-53 chr11 135060479 135060938 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 75356 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 278-255 chr21 34123602 34123803 + 2 NA intron (NM_032476, intron 1 of 2) intron (NM_032476, intron 1 of 2) 50124 NM_006933 6526 Hs.302742 NM_006933 ENSG00000198743 SLC5A3 BCW2|SMIT|SMIT1|SMIT2 solute carrier family 5 member 3 protein-coding 284-147 chr16 49334199 49334469 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -39470 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 281-70 chr11 88562349 88562525 + 2 NA intron (NM_001143831, intron 7 of 8) MIRb|SINE|MIR 57861 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 274-241 chr20 51244113 51244292 + 2 NA Intergenic MIRb|SINE|MIR 208775 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 450-94 chr15 72863380 72863658 + 2 NA Intergenic LTR16D|LTR|ERVL -79761 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 288-152 chr16 80855353 80855593 + 2 NA intron (NR_131948, intron 1 of 2) intron (NR_131948, intron 1 of 2) 37123 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 236-79 chr12 7637477 7637651 + 2 NA Intergenic Intergenic 28344 NM_005889 339 Hs.560 NM_001644 ENSG00000111701 APOBEC1 APOBEC-1|BEDP|CDAR1|HEPR apolipoprotein B mRNA editing enzyme catalytic subunit 1 protein-coding 333-338 chr22 48236266 48236576 + 2 NA Intergenic LTR33A_|LTR|ERVL -37943 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 281-294 chr3 134865598 134865837 + 2 NA intron (NM_004441, intron 1 of 15) L1ME4b|LINE|L1 70457 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 310-127 chr14 40367528 40367773 + 2 NA Intergenic HAL1ME|LINE|L1 -587061 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 237-280 chr4 182111557 182111723 + 2 NA Intergenic Intergenic 32875 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 436-105 chr16 87399288 87399656 + 2 NA intron (NM_022818, intron 2 of 3) intron (NM_022818, intron 2 of 3) 7136 NM_022818 81631 Hs.356061 NM_022818 ENSG00000140941 MAP1LC3B ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a microtubule associated protein 1 light chain 3 beta protein-coding 358-417 chr6 139636480 139636742 + 2 NA Intergenic L1MA3|LINE|L1 -134462 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 299-359 chr5 33142846 33143086 + 2 NA Intergenic L1M4b|LINE|L1 -86769 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 310-306 chr21 30536127 30536350 + 2 NA Intergenic Intergenic 5626 NM_001303120 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 233-342 chr6 121155237 121155418 + 2 NA intron (NR_104452, intron 27 of 35) L1P4a|LINE|L1 179153 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 358-278 chr22 20975961 20976259 + 2 NA intron (NM_144704, intron 9 of 20) intron (NM_144704, intron 9 of 20) -6187 NM_006767 8216 Hs.78788 NM_006767 ENSG00000099949 LZTR1 BTBD29|LZTR-1|NS10|NS2|SWNTS2 leucine zipper like transcription regulator 1 protein-coding 334-301 chr2 226072065 226072258 + 2 NA Intergenic Intergenic -70633 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 402-370 chrX 80339053 80339350 + 2 NA intron (NM_001170574, intron 2 of 4) intron (NM_001170574, intron 2 of 4) 3697 NM_001170574 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 234-236 chr3 60131126 60131327 + 2 NA intron (NM_001320900, intron 6 of 9) MER2|DNA|TcMar-Tigger -50317 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 360-416 chr6 117062902 117063137 + 2 NA Intergenic L1MA4A|LINE|L1 185777 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 509-244 chr8 25207007 25207342 + 2 NA intron (NM_024940, intron 1 of 51) intron (NM_024940, intron 1 of 51) 22485 NM_001322810 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 279-257 chr3 60795601 60795788 + 2 NA intron (NR_148921, intron 4 of 4) AluJb|SINE|Alu -177824 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 345-517 chr8 60131288 60131620 + 2 NA Intergenic L1MC4|LINE|L1 149946 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 202-270 chr9 31281255 31281419 + 2 NA Intergenic Intergenic 100153 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 376-307 chr5 15933769 15934120 + 2 NA intron (NM_001278317, intron 3 of 3) intron (NM_001278317, intron 3 of 3) -1238 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 392-123 chr18 53136219 53136477 + 2 NA intron (NM_005215, intron 7 of 28) intron (NM_005215, intron 7 of 28) -100753 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 284-256 chr3 29087037 29087285 + 2 NA Intergenic L1PREC2|LINE|L1 193778 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 373-336 chr5 118713395 118713658 + 2 NA Intergenic L1M1|LINE|L1 117338 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 306-321 chr3 104028093 104028354 + 2 NA Intergenic L1MC3|LINE|L1 -504107 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 456-225 chr4 74663719 74664170 + 2 NA Intergenic Intergenic 130579 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 518-64 chr11 117480642 117481056 + 2 NA intron (NM_020693, intron 13 of 32) intron (NM_020693, intron 13 of 32) 152995 NM_014956 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 458-158 chr21 25575902 25576263 + 2 NA TTS (NR_001458) TTS (NR_001458) 2102 NR_030784 406947 NR_030784 ENSG00000283904 MIR155 MIRN155|miRNA155|mir-155 microRNA 155 ncRNA 309-486 chr6 123025963 123026194 + 2 NA intron (NM_001010852, intron 3 of 5) intron (NM_001010852, intron 3 of 5) 29843 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 244-169 chr2 103533386 103533563 + 2 NA Intergenic L1PB3|LINE|L1 -549045 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 200-26 chr1 244997079 244997233 + 2 NA intron (NR_026587, intron 1 of 5) MER2|DNA|TcMar-Tigger -26287 NR_111907 101928068 Hs.134857 NR_111907 LOC101928068 - uncharacterized LOC101928068 ncRNA 418-84 chr16 3920488 3920753 + 2 NA Intergenic L2b|LINE|L2 29824 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 325-434 chr5 29636115 29636290 + 2 NA Intergenic L1MA6|LINE|L1 -240226 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 474-290 chr8 107178754 107179018 + 2 NA Intergenic Intergenic 157629 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 304-180 chr16 52319487 52319710 + 2 NA Intergenic Intergenic 61034 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 387-98 chr13 71509549 71509837 + 2 NA intron (NM_004392, intron 2 of 6) intron (NM_004392, intron 2 of 6) 357499 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 460-278 chr7 124310088 124310505 + 2 NA Intergenic Intergenic 41800 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 577-89 chr2 12512763 12513159 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -203911 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 955-24 chr8 117165231 117165852 + 2 NA intron (NM_173851, intron 6 of 7) intron (NM_173851, intron 6 of 7) 30546 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 280-390 chr7 94588084 94588307 + 2 NA intron (NM_001099400, intron 9 of 10) intron (NM_001099400, intron 9 of 10) 67938 NM_001362809 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 198-238 chr7 102984677 102984839 + 2 NA intron (NR_105043, intron 7 of 20) intron (NR_105043, intron 7 of 20) 11328 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 522-57 chr11 120848939 120849281 + 2 NA intron (NM_001282470, intron 7 of 19) intron (NM_001282470, intron 7 of 19) -29995 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 397-110 chr16 13502132 13502476 + 2 NA Intergenic Intergenic -417853 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 667-13 chr10 61218891 61219417 + 2 NA Intergenic Intergenic 202879 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 373-142 chr16 20301719 20302007 + 2 NA Intergenic Intergenic 25650 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 347-511 chr8 83406934 83407225 + 2 NA intron (NR_122034, intron 1 of 1) MER92-int|LTR|ERV1 3321 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 168-68 chr2 212148515 212148634 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 277786 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 310-207 chr18 75531978 75532185 + 2 NA Intergenic Intergenic -104378 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 297-329 chr4 64519248 64519414 + 2 NA Intergenic Intergenic -109871 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 130-28 chr16 51620944 51621015 + 2 NA Intergenic (TTTTC)n|Simple_repeat|Simple_repeat -141540 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 327-67 chr10 105443111 105443285 + 2 NA Intergenic L1MD2|LINE|L1 377135 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 333-167 chr15 87808193 87808382 + 2 NA Intergenic Intergenic 137981 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 134-23 chr12 96570979 96571066 + 2 NA intron (NM_001306084, intron 19 of 67) intron (NM_001306084, intron 19 of 67) 81445 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 169-106 chr6 43982909 43983023 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -17619 NR_160955 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 839 chr1 113832574 113833355 + 2 NA intron (NM_012411, intron 14 of 18) intron (NM_012411, intron 14 of 18) 20352 NR_125965 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 250-63 chr11 54821640 54821797 + 2 NA Intergenic ALR/Alpha|Satellite|centr 114886 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 383-322 chr5 93637453 93637752 + 2 NA intron (NM_032042, intron 10 of 10) L1MD1|LINE|L1 -16814 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 157-19 chr10 55679329 55679436 + 2 NA Intergenic Intergenic -51440 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 388-299 chr6 39643775 39644069 + 2 NA intron (NM_001289020, intron 3 of 21) L1MB7|LINE|L1 81486 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 289-245 chr2 155094063 155094241 + 2 NA Intergenic (TTATTA)n|Simple_repeat|Simple_repeat 395457 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 279-81 chr12 59557833 59558063 + 2 NA Intergenic AluSx|SINE|Alu -38081 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 461-184 chr4 25963760 25964095 + 2 NA Intergenic HAL1|LINE|L1 49735 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 344-300 chr22 49159943 49160121 + 2 NA Intergenic Intergenic 293262 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 178-41 chr13 70177691 70177820 + 2 NA Intergenic L2a|LINE|L2 -69262 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 328-488 chr6 22391229 22391497 + 2 NA Intergenic Intergenic -88528 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 217-131 chr15 98260922 98261071 + 2 NA Intergenic L1MC5|LINE|L1 70562 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 334-488 chr7 16132390 16132581 + 2 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -78001 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 805-42 chr6 165218470 165219178 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat 90781 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 456-150 chr2 56438199 56438568 + 2 NA Intergenic L1PA2|LINE|L1 -252613 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 322-311 chr22 25886842 25887131 + 2 NA intron (NM_001318245, intron 25 of 43) intron (NM_001318245, intron 25 of 43) 144798 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 223-275 chr5 44687226 44687415 + 2 NA Intergenic Intergenic 121473 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 264-28 chr1 237414599 237414769 + 2 NA intron (NM_001035, intron 10 of 104) L1MA5|LINE|L1 -56435 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 226-17 chr1 118255097 118255277 + 2 NA Intergenic Intergenic -69959 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 338-515 chr7 103995292 103995524 + 2 NA Intergenic L2a|LINE|L2 -5750 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 578-38 chr11 43724978 43725456 + 2 NA intron (NM_016142, intron 1 of 10) MIR|SINE|MIR 44479 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 287-300 chr5 8305278 8305440 + 2 NA Intergenic Intergenic 152205 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 284-93 chr12 83688119 83688278 + 2 NA Intergenic Intergenic 1001043 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 640-120 chr6 120704695 120705323 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 629471 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 315-404 chr5 166361265 166361481 + 2 NA Intergenic Intergenic 564997 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 506-69 chr12 70020578 70020946 + 2 NA Intergenic L1M1|LINE|L1 195535 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 258-283 chr4 38520204 38520365 + 2 NA intron (NR_110951, intron 1 of 7) L1MC3|LINE|L1 2896 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 794-53 chr9 107955810 107956395 + 2 NA Intergenic MIR|SINE|MIR -466333 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 261-72 chr11 98991056 98991243 + 2 NA Intergenic L1MA4A|LINE|L1 -29800 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 240-373 chr6 37310707 37310909 + 2 NA intron (NR_130108, intron 8 of 12) intron (NR_130108, intron 8 of 12) -43175 NM_183078 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 336-176 chr15 61674759 61674974 + 2 NA Intergenic Intergenic -55052 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 228-212 chr3 53413105 53413272 + 2 NA Intergenic L1MEf|LINE|L1 -65645 NM_001290205 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 233-113 chr15 79317845 79317991 + 2 NA intron (NR_125394, intron 3 of 3) L2b|LINE|L2 6806 NM_001301203 23423 Hs.71608 NM_007364 ENSG00000166557 TMED3 C15orf22|P24B|p24g4|p24gamma4|p26 transmembrane p24 trafficking protein 3 protein-coding 235-351 chr8 66449617 66449795 + 2 NA intron (NM_144650, intron 8 of 13) intron (NM_144650, intron 8 of 13) 17202 NM_144650 137872 Hs.720023 NM_144650 ENSG00000147576 ADHFE1 ADH8|HMFT2263|HOT alcohol dehydrogenase iron containing 1 protein-coding 364-343 chr5 53711053 53711276 + 2 NA Intergenic L1PA11|LINE|L1 108518 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 219-363 chr8 118644053 118644230 + 2 NA intron (NR_038210, intron 2 of 4) MLT1D|LTR|ERVL-MaLR -22178 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 254-66 chr11 107851562 107851776 + 2 NA intron (NM_017515, intron 1 of 7) intron (NM_017515, intron 1 of 7) 7118 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 428-247 chr5 174524384 174524768 + 2 NA intron (NR_125806, intron 4 of 5) L1ME4c|LINE|L1 188222 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 266-107 chr14 41128018 41128236 + 2 NA intron (NR_109758, intron 3 of 3) MLT1I|LTR|ERVL-MaLR 173416 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 222-315 chr6 12937566 12937726 + 2 NA intron (NM_001322308, intron 3 of 13) L2a|LINE|L2 -19710 NM_001322311 221692 Hs.436996 NM_030948 ENSG00000112137 PHACTR1 EIEE70|RPEL|RPEL1|dJ257A7.2 phosphatase and actin regulator 1 protein-coding 363-265 chr20 55149022 55149251 + 2 NA Intergenic Intergenic -273907 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 410-283 chr7 79673143 79673442 + 2 NA Intergenic Intergenic 219332 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 417-13 chr1 112900703 112901083 + 2 NA Intergenic AluSp|SINE|Alu 18843 NR_162120 113218506 NR_162120 MIR11399 - microRNA 11399 ncRNA 533-203 chr6 147926313 147926689 + 2 NA Intergenic L1PREC2|LINE|L1 -345827 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 219-95 chr14 20116704 20116884 + 2 NA promoter-TSS (NM_001004715) promoter-TSS (NM_001004715) -674 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 527-152 chr20 8988508 8988801 + 2 NA Intergenic L1MEd|LINE|L1 -80400 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 459-115 chr18 32795256 32795678 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -22444 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 348-377 chr4 111227425 111227689 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -366910 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 306-552 chr9 101393460 101393760 + 2 NA intron (NM_019051, intron 1 of 1) L1M2|LINE|L1 5008 NM_019051 54534 Hs.288224 NM_019051 ENSG00000136897 MRPL50 MRP-L50 mitochondrial ribosomal protein L50 protein-coding 235-413 chrX 117502544 117502722 + 2 NA Intergenic L1MA6|LINE|L1 471105 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 423-259 chr7 1878244 1878599 + 2 NA intron (NM_001013837, intron 18 of 18) L1ME4a|LINE|L1 -34168 NR_039799 100616160 NR_039799 ENSG00000265089 MIR4655 - microRNA 4655 ncRNA 178-160 chr9 105196889 105197027 + 2 NA Intergenic MIRb|SINE|MIR -47647 NM_001330731 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 421-75 chr14 25195364 25195661 + 2 NA Intergenic Intergenic -145215 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 394-114 chr15 71931212 71931498 + 2 NA intron (NM_006901, intron 18 of 41) L1MA7|LINE|L1 120801 NM_016346 10002 Hs.187354 NM_014249 ENSG00000278570 NR2E3 ESCS|PNR|RNR|RP37|rd7 nuclear receptor subfamily 2 group E member 3 protein-coding 366-411 chr7 48964574 48964856 + 2 NA Intergenic Intergenic 40168 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 385-128 chr17 13739275 13739545 + 2 NA Intergenic Intergenic -137481 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 431-315 chr9 27590434 27590785 + 2 NA Intergenic L1PA16|LINE|L1 -16743 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 367-133 chr14 87272576 87272786 + 2 NA Intergenic Intergenic 366903 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 660-53 chr20 42635310 42635790 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -49933 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 375-240 chr20 39157031 39157397 + 2 NA Intergenic Intergenic 67534 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 177-93 chr20 21026353 21026515 + 2 NA Intergenic Intergenic 79924 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 326-318 chr22 48571683 48571867 + 2 NA intron (NM_001082967, intron 1 of 3) HAL1ME|LINE|L1 -4565 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 399-115 chr17 49385076 49385355 + 2 NA Intergenic Intergenic -22742 NM_014897 22834 Hs.463375 NM_014897 ENSG00000198740 ZNF652 - zinc finger protein 652 protein-coding 751-12 chr12 24522730 24523251 + 2 NA intron (NM_152989, intron 1 of 17) L1MB1|LINE|L1 39501 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 265-60 chr11 38132126 38132347 + 2 NA Intergenic Intergenic 193635 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 367-63 chr10 114032787 114033061 + 2 NA Intergenic Intergenic -10942 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 271-125 chr14 42506738 42506981 + 2 NA Intergenic L1M2|LINE|L1 900003 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 287-396 chr8 51399907 51400149 + 2 NA intron (NM_144651, intron 17 of 22) intron (NM_144651, intron 17 of 22) 409417 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 143-32 chr16 82879775 82879892 + 2 NA intron (NM_001220490, intron 2 of 12) (ATAATAT)n|Simple_repeat|Simple_repeat 106514 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 189-198 chr8 32722213 32722356 + 2 NA intron (NM_001322197, intron 1 of 7) intron (NM_001322197, intron 1 of 7) 449 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 271-396 chr7 5752840 5753065 + 2 NA exon (NM_207116, exon 3 of 17) exon (NM_207116, exon 3 of 17) 28711 NM_207111 54476 Hs.487458 NM_019011 ENSG00000011275 RNF216 CAHH|TRIAD3|U7I1|UBCE7IP1|ZIN ring finger protein 216 protein-coding 427-44 chr12 34514851 34515248 + 2 NA Intergenic ALR/Alpha|Satellite|centr 492553 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 189-13 chr10 14697590 14697735 + 2 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) 77235 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 253-26 chr1 185454986 185455172 + 2 NA Intergenic Intergenic -120040 NR_038424 100288079 Hs.131220 NR_038424 ENSG00000261024 GS1-279B7.1 - microtubule associated protein 1 light chain 3 beta pseudogene pseudo 345-556 chr9 84455730 84455920 + 2 NA Intergenic AluSx1|SINE|Alu -87098 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 651-15 chr10 23810395 23810915 + 2 NA intron (NM_001098500, intron 1 of 18) (TATATAT)n|Simple_repeat|Simple_repeat 115928 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 329-342 chr22 47481156 47481473 + 2 NA intron (NR_109967, intron 1 of 2) L1MB8|LINE|L1 5797 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 402-121 chr18 21916369 21916677 + 2 NA Intergenic Kanga1b|DNA|TcMar-Tc2 -85117 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 311-261 chr2 98280004 98280208 + 2 NA intron (NM_001345864, intron 16 of 21) intron (NM_001345864, intron 16 of 21) -66049 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 325-292 chr2 213276242 213276453 + 2 NA non-coding (NR_161186, exon 3 of 3) non-coding (NR_161186, exon 3 of 3) 7862 NR_144752 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 262-398 chr7 52393683 52393923 + 2 NA Intergenic MER90a|LTR|ERV1 -641830 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 477-240 chr5 155451035 155451356 + 2 NA Intergenic Intergenic 437440 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 280-334 chr5 129791997 129792142 + 2 NA Intergenic L1PB1|LINE|L1 43975 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 378-74 chr11 8306321 8306540 + 2 NA Intergenic L1MEi|LINE|L1 -37643 NM_001270428 4004 Hs.654426 NM_002315 ENSG00000166407 LMO1 RBTN1|RHOM1|TTG1 LIM domain only 1 protein-coding 519-58 chr14 30200836 30201258 + 2 NA Intergenic Intergenic -273200 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 622-69 chr2 162995092 162995556 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -156557 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 323-420 chr5 84646259 84646491 + 2 NA Intergenic Intergenic -261495 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 528-55 chr12 1550991 1551338 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -18972 NR_160736 107984507 NR_160736 LOC107984507 - uncharacterized LOC107984507 ncRNA 603-133 chr5 82373178 82373592 + 2 NA Intergenic Intergenic 93923 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 317-443 chr7 19680782 19681040 + 2 NA Intergenic Intergenic 24525 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 259-183 chr2 3629554 3629710 + 2 NA intron (NM_199235, intron 4 of 7) (ATGT)n|Simple_repeat|Simple_repeat 23580 NM_001255989 78989 Hs.32603 NM_024027 ENSG00000118004 COLEC11 3MC2|CL-K1-I|CL-K1-II|CL-K1-IIa|CL-K1-IIb|CLK1 collectin subfamily member 11 protein-coding 515-108 chr2 43090412 43090787 + 2 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR 11846 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 478-129 chr2 5594410 5594739 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie 96544 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 411-59 chr11 107693529 107693794 + 2 NA Intergenic L1MEf|LINE|L1 18395 NM_003063 6588 Hs.334629 NM_003063 ENSG00000170290 SLN - sarcolipin protein-coding 265-81 chr12 83375527 83375715 + 2 NA Intergenic L1PREC2|LINE|L1 688466 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 338-75 chr10 105636409 105636691 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 183783 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 210-258 chr7 22178126 22178284 + 2 NA intron (NM_001367603, intron 1 of 5) intron (NM_001367603, intron 1 of 5) 15540 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 529-209 chr8 10688302 10688733 + 2 NA intron (NM_001040032, intron 2 of 3).2 intron (NM_001040032, intron 2 of 3).2 15889 NM_001040032 203076 Hs.371776 NM_001040032 ENSG00000171060 C8orf74 - chromosome 8 open reading frame 74 protein-coding 248-72 chr11 128084687 128084859 + 2 NA Intergenic L1PA14|LINE|L1 -123993 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 188-31 chr11 121811068 121811223 + 2 NA Intergenic L1PA15|LINE|L1 288699 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 254-332 chr5 164948565 164948795 + 2 NA Intergenic Intergenic 478401 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 487-130 chr2 5192956 5193284 + 2 NA Intergenic L1MEd|LINE|L1 497998 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 340-509 chr7 77433304 77433575 + 2 NA Intergenic Intergenic -17090 NM_001350899 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 267-260 chr3 95971075 95971269 + 2 NA Intergenic Intergenic -287979 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 672-44 chr18 31393702 31394321 + 2 NA intron (NM_001134453, intron 8 of 14) intron (NM_001134453, intron 8 of 14) 17234 NM_001134453 147409 Hs.407618 NM_177986 ENSG00000175065 DSG4 CDGF13|CDHF13|HYPT6|LAH desmoglein 4 protein-coding 582-5 chr1 152909019 152909391 + 2 NA intron (NM_005547, intron 1 of 1) MIR3|SINE|MIR 660 NM_005547 3713 Hs.516439 NM_005547 ENSG00000163207 IVL - involucrin protein-coding 214-191 chr21 25001649 25001809 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 161179 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 273-225 chr2 81992821 81993027 + 2 NA Intergenic Intergenic -525978 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 238-27 chr1 230036343 230036516 + 2 NA Intergenic L1M4|LINE|L1 -21360 NM_001291866 2590 Hs.743964 NM_004481 ENSG00000143641 GALNT2 GalNAc-T2 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 298-215 chr2 70072101 70072387 + 2 NA intron (NR_033872, intron 4 of 10) AluSz6|SINE|Alu 14771 NR_033872 400960 Hs.683864 NR_033872 ENSG00000179818 PCBP1-AS1 - PCBP1 antisense RNA 1 ncRNA 311-81 chr11 54745862 54746039 + 2 NA Intergenic ALR/Alpha|Satellite|centr 39118 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 278-393 chr7 41000050 41000321 + 2 NA Intergenic Intergenic -20246 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 384-345 chr7 35343315 35343664 + 2 NA intron (NR_038864, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 29634 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 302-8 chr1 80415769 80416068 + 2 NA Intergenic Intergenic -119837 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 504-73 chr14 72020397 72020715 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 87029 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 639-87 chr4 46531604 46532030 + 2 NA Intergenic L1MEg|LINE|L1 -141689 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 438-94 chr17 65310217 65310612 + 2 NA Intergenic AluSx|SINE|Alu -147127 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 178-138 chr7 112648080 112648194 + 2 NA intron (NR_110158, intron 5 of 7) L1MA9|LINE|L1 25756 NR_110158 101928012 Hs.521131 NR_110158 ENSG00000223646 LOC101928012 - uncharacterized LOC101928012 ncRNA 422-235 chr5 25312762 25313060 + 2 NA Intergenic L1ME3Cz|LINE|L1 121958 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 336-328 chr20 47078625 47078906 + 2 NA intron (NM_172110, intron 7 of 13) intron (NM_172110, intron 7 of 13) -88202 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 423-297 chr8 107029520 107029801 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -259416 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 536-257 chrX 83069396 83069788 + 2 NA Intergenic Intergenic -438698 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 346-279 chr20 12235222 12235410 + 2 NA Intergenic Intergenic 317423 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 338-43 chr10 4751437 4751639 + 2 NA Intergenic L1MEf|LINE|L1 -73468 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 383-77 chr12 19006569 19006787 + 2 NA Intergenic LTR82B|LTR|ERVL -123055 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 332-210 chr18 10664668 10664910 + 2 NA non-coding (NR_110777, exon 3 of 3) non-coding (NR_110777, exon 3 of 3) 2856 NR_110777 101927410 Hs.436902 NR_110777 ENSG00000260779 LOC101927410 - uncharacterized LOC101927410 ncRNA 248-366 chr7 17147241 17147445 + 2 NA Intergenic L2a|LINE|L2 -151309 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 260-40 chr10 32405754 32405944 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -27080 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 330-437 chr5 123311218 123311403 + 2 NA Intergenic L1PA10|LINE|L1 112282 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 323-449 chr6 16883119 16883365 + 2 NA Intergenic L1MCa|LINE|L1 -121752 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 368-179 chr16 62493586 62493834 + 2 NA Intergenic Intergenic -457272 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 246-349 chr6 55573949 55574074 + 2 NA intron (NM_001287746, intron 1 of 9) L1MEg|LINE|L1 5203 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 340-107 chr12 40843385 40843605 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 15557 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 531-50 chr12 117371002 117371436 + 2 NA Intergenic L2b|LINE|L2 -9417 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 487-285 chr8 82193543 82193869 + 2 NA Intergenic Intergenic -351420 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 253-58 chr10 100300451 100300625 + 2 NA intron (NM_016112, intron 2 of 15) L1MC4|LINE|L1 -13826 NM_001282437 282991 Hs.34906 NM_173809 ENSG00000196072 BLOC1S2 BLOS2|BORCS2|CEAP|CEAP11 biogenesis of lysosomal organelles complex 1 subunit 2 protein-coding 414-85 chr14 56045714 56045991 + 2 NA Intergenic Intergenic -72559 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 351-191 chr19 387545 387723 + 2 NA Intergenic LTR5_Hs|LTR|ERVK -11608 NM_016585 51298 Hs.250002 NM_016585 ENSG00000105549 THEG CT56|THEG1 theg spermatid protein protein-coding 459-78 chr14 38890502 38890936 + 2 NA intron (NR_135256, intron 1 of 3) intron (NR_135256, intron 1 of 3) 8123 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 323-559 chr8 120666532 120666786 + 2 NA intron (NM_021021, intron 2 of 6) L1ME1|LINE|L1 -94594 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 380-395 chr8 80395212 80395430 + 2 NA Intergenic AluJr|SINE|Alu -90272 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 194-176 chr6 15208743 15208897 + 2 NA Intergenic Intergenic -37249 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 311-518 chr8 117222737 117222915 + 2 NA Intergenic L1MEc|LINE|L1 87831 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 162-109 chr6 48687807 48687899 + 2 NA Intergenic L1PREC2|LINE|L1 -619164 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 340-119 chr12 126715844 126716057 + 2 NA Intergenic Intergenic -21057 NR_038256 100507206 Hs.662298 NR_038256 LINC00943 - long intergenic non-protein coding RNA 943 ncRNA 364-425 chr7 114302709 114303000 + 2 NA intron (NR_033766, intron 2 of 19) MLT1E1A|LTR|ERVL-MaLR -111961 NR_033767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 425-122 chr19 22064466 22064717 + 2 NA intron (NM_001316996, intron 2 of 4) intron (NM_001316996, intron 2 of 4) 12107 NM_001316997 113835 Hs.283900 NM_033468 ENSG00000197134 ZNF257 BMZF-4|BMZF4 zinc finger protein 257 protein-coding 256-206 chr2 114895543 114895747 + 2 NA intron (NM_001321910, intron 2 of 26) MLT1J2|LTR|ERVL-MaLR -62097 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 276-467 chr8 139828995 139829155 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -125952 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 266-297 chr4 92518794 92519047 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 214521 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 275-332 chr7 48295966 48296198 + 2 NA intron (NM_152701, intron 21 of 61) intron (NM_152701, intron 21 of 61) 124624 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 360-427 chr6 164442864 164443103 + 2 NA Intergenic MER30|DNA|hAT-Charlie 379080 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 219-167 chr2 58981220 58981397 + 2 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -236400 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 530-84 chr15 62156485 62156811 + 2 NA Intergenic LTR16|LTR|ERVL 8637 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 229-47 chr10 113760761 113760894 + 2 NA intron (NM_001193435, intron 2 of 10) L1ME1|LINE|L1 -3992 NM_182601 79949 Hs.228320 NM_024889 ENSG00000148735 PLEKHS1 C10orf81|HEL185 pleckstrin homology domain containing S1 protein-coding 241-400 chr8 109167985 109168203 + 2 NA Intergenic (TATTTTG)n|Simple_repeat|Simple_repeat 81466 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 170-59 chr17 53865125 53865291 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 42281 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 209-98 chr14 76981652 76981808 + 2 NA Intergenic Intergenic 22092 NR_133913 105370578 Hs.574184 NR_133913 ENSG00000258602 LINC01629 linc-KIAA1737-2 long intergenic non-protein coding RNA 1629 ncRNA 273-12 chr1 77391914 77392135 + 2 NA intron (NM_012093, intron 6 of 13) intron (NM_012093, intron 6 of 13) 108937 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 585-120 chr5 16312701 16313052 + 2 NA Intergenic Intergenic 128226 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 232-79 chr12 99463008 99463165 + 2 NA intron (NM_152788, intron 10 of 25) L1M|LINE|L1 -184667 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 259-337 chr6 40457394 40457563 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 79141 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 400-369 chr9 92496275 92496485 + 2 NA exon (NM_001393, exon 10 of 10) exon (NM_001393, exon 10 of 10) -13874 NM_017680 54829 Hs.435655 NM_017680 ENSG00000106819 ASPN OS3|PLAP-1|PLAP1|SLRR1C asporin protein-coding 329-285 chr2 120621559 120621852 + 2 NA Intergenic Intergenic -114163 NM_001371271 372-136 chr14 31695381 31695751 + 2 NA intron (NR_120408, intron 6 of 9) MSTD|LTR|ERVL-MaLR -19003 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 237-81 chr12 80915759 80915940 + 2 NA intron (NM_004664, intron 1 of 5) L1PA16|LINE|L1 19984 NR_030349 693203 NR_030349 ENSG00000208022 MIR618 MIRN618|hsa-mir-618|mir-618 microRNA 618 ncRNA 359-158 chr15 76843614 76843890 + 2 NA intron (NR_148227, intron 4 of 32) FLAM_A|SINE|Alu 18192 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 231-48 chr10 132622080 132622250 + 2 NA intron (NM_005539, intron 2 of 15) L1MC|LINE|L1 -59110 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 606-100 chr22 48233447 48233830 + 2 NA Intergenic L1MEd|LINE|L1 -40726 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 456-59 chr12 46991318 46991753 + 2 NA Intergenic L1PA16|LINE|L1 -88068 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 302-63 chr11 1368592 1368834 + 2 NA Intergenic MIRc|SINE|MIR -21221 NM_001256627 9024 Hs.170819 NM_003957 ENSG00000174672 BRSK2 C11orf7|PEN11B|SAD1|SADA|STK29 BR serine/threonine kinase 2 protein-coding 571-76 chr2 75581514 75581950 + 2 NA Intergenic L1MA3|LINE|L1 -12013 NM_032181 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 221-320 chr9 74698253 74698451 + 2 NA Intergenic Intergenic 82818 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 292-429 chr8 75430840 75431070 + 2 NA intron (NM_001330561, intron 1 of 11) L1MEd|LINE|L1 23306 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 250-284 chr3 89777486 89777706 + 2 NA Intergenic L1P4|LINE|L1 669975 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 352-575 chrX 74787869 74788116 + 2 NA intron (NM_001008537, intron 1 of 3) intron (NM_001008537, intron 1 of 3) 137460 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 373-441 chrX 66989206 66989498 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -350054 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 333-314 chr20 55899969 55900291 + 2 NA Intergenic Intergenic 105389 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 127-78 chr8 87748550 87748644 + 2 NA Intergenic Intergenic 125418 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 454-277 chr6 85828791 85829202 + 2 NA Intergenic L1M2|LINE|L1 -150263 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 666-70 chr20 54421202 54421719 + 2 NA Intergenic L1ME4a|LINE|L1 -54133 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 1004-17 chr5 163682318 163682853 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 176966 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 342-62 chr10 51125824 51126102 + 2 NA intron (NM_006258, intron 1 of 17) intron (NM_006258, intron 1 of 17) 51476 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 191-126 chr20 48081147 48081324 + 2 NA Intergenic Intergenic -91118 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 338-136 chr12 100773899 100774189 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -20732 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 289-311 chr3 99220638 99220869 + 2 NA Intergenic L1MA3|LINE|L1 -319058 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 289-33 chr1 208725917 208726078 + 2 NA Intergenic Intergenic -2691 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 248-424 chr9 25814125 25814308 + 2 NA Intergenic MIRb|SINE|MIR 34160 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 305-553 chr8 140318497 140318735 + 2 NA intron (NM_001160372, intron 9 of 22) L1MA7|LINE|L1 139128 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 228-273 chr5 109248715 109248877 + 2 NA intron (NR_149040, intron 3 of 3) ERVL-E-int|LTR|ERVL 77573 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 391-45 chr10 94933375 94933701 + 2 NA Intergenic L1MC1|LINE|L1 -5120 NM_000771 1559 Hs.282624 NM_000771 ENSG00000138109 CYP2C9 CPC9|CYP2C|CYP2C10|CYPIIC9|P450IIC9 cytochrome P450 family 2 subfamily C member 9 protein-coding 383-39 chr10 107102507 107102790 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 62058 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 316-556 chr8 96681732 96681999 + 2 NA intron (NM_016134, intron 1 of 7) THE1B-int|LTR|ERVL-MaLR 36623 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 287-138 chr14 82683583 82683804 + 2 NA intron (NR_146650, intron 2 of 5) L2a|LINE|L2 41061 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 216-207 chr22 33822127 33822283 + 2 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 97219 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 303-41 chr10 59916053 59916249 + 2 NA Intergenic L1MC5a|LINE|L1 -9595 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 432-191 chr3 188906125 188906479 + 2 NA Intergenic Intergenic 41337 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 393-99 chr14 59756466 59756695 + 2 NA intron (NM_021136, intron 1 of 8) intron (NM_021136, intron 1 of 8) -109560 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 210-115 chr19 52460741 52460902 + 2 NA intron (NM_001366182, intron 3 of 5) L1M3|LINE|L1 7268 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 319-430 chr5 146809996 146810161 + 2 NA intron (NM_001271899, intron 2 of 9) MIRb|SINE|MIR 68707 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 297-147 chr15 60036717 60036904 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 32499 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 326-100 chr11 50544441 50544705 + 2 NA Intergenic ALR/Alpha|Satellite|centr 135426 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 216-203 chr21 23284920 23285077 + 2 NA Intergenic Intergenic 99837 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 323-459 chr6 56269302 56269491 + 2 NA intron (NM_001318752, intron 1 of 28) AluYa5|SINE|Alu -21816 NM_001318751 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 216-293 chr5 163279076 163279273 + 2 NA Intergenic L1MEf|LINE|L1 -158397 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 311-443 chr6 125551548 125551799 + 2 NA Intergenic Intergenic -122680 NR_038906 643623 Hs.520367 NR_038906 ENSG00000224506 LINC02523 - long intergenic non-protein coding RNA 2523 ncRNA 342-347 chr4 14861435 14861621 + 2 NA intron (NR_126435, intron 1 of 6) L3|LINE|CR1 26641 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 559-156 chr6 43332879 43333246 + 2 NA Intergenic Intergenic -24236 NM_206922 401262 Hs.653165 NM_206922 ENSG00000146215 CRIP3 CRP-3|TLP|TLP-A|h6LIMo cysteine rich protein 3 protein-coding 719-69 chr6 145251119 145251594 + 2 NA Intergenic Intergenic 435521 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 141-32 chr17 4083461 4083545 + 2 NA intron (NM_015113, intron 16 of 54) intron (NM_015113, intron 16 of 54) 59527 NM_015113 23140 Hs.277624 NM_015113 ENSG00000074755 ZZEF1 ZZZ4 zinc finger ZZ-type and EF-hand domain containing 1 protein-coding 224-181 chr21 29758650 29758843 + 2 NA intron (NR_027021, intron 2 of 4) intron (NR_027021, intron 2 of 4) 10571 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 301-355 chr5 38162120 38162352 + 2 NA intron (NR_147009, intron 2 of 2) MER5B|DNA|hAT-Charlie 13756 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 187-102 chr3 6637772 6637925 + 2 NA intron (NR_110123, intron 2 of 3) L2b|LINE|L2 167601 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 192-93 chr2 545014 545201 + 2 NA promoter-TSS (NR_146470) promoter-TSS (NR_146470) -698 NR_146470 101927362 Hs.385749 NR_146470 ENSG00000225942 LINC01875 - long intergenic non-protein coding RNA 1875 ncRNA 303-168 chr17 63569558 63569815 + 2 NA intron (NR_073585, intron 1 of 7) intron (NR_073585, intron 1 of 7) 19209 NR_073585 10238 Hs.410596 NM_005828 ENSG00000136485 DCAF7 AN11|HAN11|SWAN-1|WDR68 DDB1 and CUL4 associated factor 7 protein-coding 330-195 chr16 77792883 77793091 + 2 NA intron (NM_020927, intron 1 of 8) intron (NM_020927, intron 1 of 8) 4423 NM_020927 57687 Hs.461405 NM_020927 ENSG00000171724 VAT1L - vesicle amine transport 1 like protein-coding 393-162 chr2 71722133 71722456 + 2 NA Intergenic Intergenic 255595 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 329-493 chr6 62530152 62530415 + 2 NA Intergenic Intergenic -244056 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 389-161 chr2 31643137 31643504 + 2 NA Intergenic L1MC4|LINE|L1 -62382 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 458-190 chr4 110296738 110297169 + 2 NA Intergenic Intergenic -98338 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 435-108 chr18 6499205 6499423 + 2 NA Intergenic L1PB3|LINE|L1 -12102 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 432-121 chr2 39625807 39626069 + 2 NA Intergenic Intergenic -39560 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 296-261 chr20 9849035 9849255 + 2 NA Intergenic L1MD2|LINE|L1 -10069 NM_177990 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 397-341 chr8 103167643 103167893 + 2 NA intron (NR_109954, intron 1 of 2) L2c|LINE|L2 4372 NR_109954 100499183 Hs.654812 NR_034092 ENSG00000247081 BAALC-AS1 FZD6-DT|lncFZD6 BAALC antisense RNA 1 ncRNA 294-422 chr6 147826373 147826591 + 2 NA Intergenic Intergenic 317792 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 470-58 chr12 115629999 115630315 + 2 NA Intergenic Intergenic 518497 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 213-184 chr3 141791525 141791685 + 2 NA intron (NM_139209, intron 2 of 3) intron (NM_139209, intron 2 of 3) 13404 NM_139209 131890 Hs.680654 NM_139209 ENSG00000114124 GRK7 GPRK7 G protein-coupled receptor kinase 7 protein-coding 225-243 chr4 61863972 61864136 + 2 NA intron (NM_001371343, intron 9 of 23) intron (NM_001371343, intron 9 of 23) 297711 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 647-9 chr1 238207471 238207946 + 2 NA Intergenic L1MEg|LINE|L1 278309 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 140-55 chr4 122004164 122004243 + 2 NA Intergenic Intergenic -52143 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 310-86 chr11 83867322 83867508 + 2 NA intron (NM_001142699, intron 16 of 27) intron (NM_001142699, intron 16 of 27) -184990 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 585-121 chr5 19823830 19824351 + 2 NA intron (NM_001349559, intron 3 of 12) L1P4d|LINE|L1 62182 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 273-64 chr10 111683320 111683556 + 2 NA Intergenic L1MEd|LINE|L1 500327 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 344-347 chr4 33816756 33817065 + 2 NA Intergenic Intergenic 222983 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 335-471 chr6 118943646 118943847 + 2 NA Intergenic L1M1|LINE|L1 -8584 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 295-99 chr12 53763007 53763248 + 2 NA Intergenic Intergenic -6093 NR_104332 102216268 Hs.742074 NR_104332 ENSG00000260492 CISTR CISTR-ACT|CISTRACT|re52431 chondrogenesis-associated transcript ncRNA 538-261 chrX 45501404 45501868 + 2 NA Intergenic L2c|LINE|L2 -3752 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 306-167 chr15 76554098 76554314 + 2 NA intron (NR_148227, intron 23 of 32) L1PA15|LINE|L1 -32441 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 389-346 chr7 63055738 63055992 + 2 NA Intergenic AluSx1|SINE|Alu 248191 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 288-195 chr2 76990543 76990818 + 2 NA intron (NR_110284, intron 3 of 3) L1PA16|LINE|L1 4715 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 408-10 chr1 71576991 71577325 + 2 NA intron (NM_173808, intron 6 of 6) intron (NM_173808, intron 6 of 6) 259854 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 351-378 chr5 34045910 34046086 + 2 NA intron (NR_146599, intron 7 of 11) MER57F|LTR|ERV1 -2785 NM_181435 114899 Hs.171929 NM_030945 ENSG00000082196 C1QTNF3 C1ATNF3|CORCS|CORS|CORS-26|CORS26|CTRP3 C1q and TNF related 3 protein-coding 359-182 chr17 43611016 43611235 + 2 NA Intergenic Intergenic 50438 NM_013999 4222 Hs.438 NM_004527 ENSG00000005102 MEOX1 KFS2|MOX1 mesenchyme homeobox 1 protein-coding 334-333 chr3 19656064 19656392 + 2 NA Intergenic L1M3de|LINE|L1 277989 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 279-140 chr17 62861928 62862119 + 2 NA Intergenic Intergenic 53521 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 334-402 chr4 166407069 166407362 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 533978 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 264-19 chr1 190646944 190647143 + 2 NA intron (NR_033922, intron 1 of 4) intron (NR_033922, intron 1 of 4) 22153 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 537-27 chr10 66427052 66427431 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -498795 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 357-411 chr7 40308056 40308342 + 2 NA intron (NM_024728, intron 8 of 14) intron (NM_024728, intron 8 of 14) 173223 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 345-187 chr16 54594611 54594919 + 2 NA Intergenic Intergenic -224066 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 398-177 chr2 147254158 147254437 + 2 NA Intergenic Intergenic -590220 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 279-367 chr6 84370140 84370301 + 2 NA Intergenic Intergenic 104709 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 300-484 chr8 141951686 141951893 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -165476 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 282-304 chr3 97695750 97695949 + 2 NA intron (NM_001080448, intron 14 of 17) intron (NM_001080448, intron 14 of 17) -68672 NM_032146 84100 Hs.373801 NM_032146 ENSG00000113966 ARL6 BBS3|RP55 ADP ribosylation factor like GTPase 6 protein-coding 422-296 chr8 85842436 85842729 + 2 NA Intergenic Intergenic -14640 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 299-168 chr17 32877801 32877960 + 2 NA promoter-TSS (NM_001303279) promoter-TSS (NM_001303279) -756 NM_001303280 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 482-301 chr9 122708630 122709039 + 2 NA Intergenic L1MC1|LINE|L1 -15156 NM_001005235 254973 Hs.626838 NM_001005235 ENSG00000136939 OR1L4 OR1L5|OR9-29|OR9-E|OST046 olfactory receptor family 1 subfamily L member 4 protein-coding 472-35 chr10 58531919 58532258 + 2 NA intron (NM_001080512, intron 1 of 20) L1M4c|LINE|L1 19216 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 286-78 chr11 127726741 127727018 + 2 NA Intergenic (TTAA)n|Simple_repeat|Simple_repeat 455809 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 307-83 chr11 38120066 38120315 + 2 NA Intergenic Intergenic 181589 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 368-393 chr6 56361134 56361383 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 32870 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 300-401 chr6 127352473 127352655 + 2 NA Intergenic L1M2|LINE|L1 -8955 NM_018479 55862 Hs.486410 NM_018479 ENSG00000093144 ECHDC1 HEL-S-76|MMCD|dJ351K20.2 ethylmalonyl-CoA decarboxylase 1 protein-coding 266-422 chr8 100485439 100485615 + 2 NA Intergenic Intergenic 74232 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 726-30 chr14 64642535 64642999 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -61657 NM_001308147 26030 Hs.509637 NM_015549 ENSG00000126822 PLEKHG3 ARHGEF43|KIAA0599 pleckstrin homology and RhoGEF domain containing G3 protein-coding 324-310 chr20 42741804 42742052 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 56445 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 272-418 chr7 46545703 46545878 + 2 NA Intergenic L2a|LINE|L2 151332 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 292-23 chr1 154288285 154288515 + 2 NA Intergenic SVA_D|Retroposon|SVA 15771 NM_001018837 10456 Hs.199625 NM_006118 ENSG00000143575 HAX1 HCLSBP1|HS1BP1|SCN3 HCLS1 associated protein X-1 protein-coding 309-107 chr12 49139083 49139243 + 2 NA Intergenic L2a|LINE|L2 -7768 NM_006082 10376 Hs.524390 NM_006082 ENSG00000123416 TUBA1B K-ALPHA-1 tubulin alpha 1b protein-coding 288-181 chr2 54134280 54134446 + 2 NA intron (NM_001320588, intron 1 of 3) intron (NM_001320588, intron 1 of 3) 11080 NM_001320588 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 512-28 chr10 31068109 31068526 + 2 NA Intergenic Tigger9a|DNA|TcMar-Tigger -36380 NM_001143768 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 337-118 chr12 65390169 65390359 + 2 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 111277 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 363-278 chr22 49700464 49700673 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -43049 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 544-24 chr10 10958838 10959255 + 2 NA intron (NM_001326319, intron 4 of 16) AluSz|SINE|Alu -6883 NR_024411 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 337-106 chr12 14325035 14325321 + 2 NA Intergenic AluSq2|SINE|Alu -40454 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 330-532 chr8 126666238 126666535 + 2 NA Intergenic Intergenic -107908 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 376-314 chr5 28034983 28035271 + 2 NA Intergenic Intergenic 252538 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 232-162 chr2 31809671 31809794 + 2 NA Intergenic Intergenic -5752 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 263-334 chr5 115378334 115378549 + 2 NA Intergenic Intergenic -81787 NM_001040440 153733 Hs.436121 NM_152549 ENSG00000164221 CCDC112 MBC1 coiled-coil domain containing 112 protein-coding 548-104 chr2 5434471 5434845 + 2 NA Intergenic Intergenic 256460 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 332-389 chr4 142963893 142964148 + 2 NA Intergenic Intergenic -117485 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 202-78 chr14 83390068 83390190 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 747497 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 535-154 chr20 24384005 24384422 + 2 NA Intergenic Intergenic -84986 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 521-172 chr4 17987076 17987462 + 2 NA intron (NR_158566, intron 1 of 5) L1MB7|LINE|L1 34486 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 325-492 chr7 8257555 8257734 + 2 NA intron (NM_001350826, intron 1 of 14) intron (NM_001350826, intron 1 of 14) 4408 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 284-96 chr12 104006931 104007133 + 2 NA intron (NM_031302, intron 5 of 11) intron (NM_031302, intron 5 of 11) 41160 NM_003211 6996 Hs.584809 NM_003211 ENSG00000139372 TDG hTDG thymine DNA glycosylase protein-coding 243-394 chr6 113577621 113577793 + 2 NA Intergenic AluJr|SINE|Alu 72368 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 395-124 chr16 60351573 60351913 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 8050 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 266-270 chr3 186938525 186938784 + 2 NA intron (NM_173216, intron 1 of 7) intron (NM_173216, intron 1 of 7) 8128 NM_173217 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 499-10 chr1 109937791 109938187 + 2 NA Intergenic L1M4|LINE|L1 27140 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 229-280 chr4 105654562 105654719 + 2 NA intron (NM_001242729, intron 8 of 13) MER20B|DNA|hAT-Charlie 54049 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 538-161 chr3 180219608 180220015 + 2 NA Intergenic L1MC1|LINE|L1 -182874 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 136-8 chr10 50925576 50925663 + 2 NA Intergenic Intergenic -39944 NM_138933 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 350-140 chr14 73383136 73383369 + 2 NA intron (NM_001005743, intron 2 of 12) L1MEg|LINE|L1 75328 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 139-72 chr5 71716566 71716667 + 2 NA Intergenic LTR83|LTR|ERVL -2659 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 360-74 chr11 116581364 116581682 + 2 NA Intergenic Intergenic -57899 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 530-86 chr16 9991173 9991607 + 2 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 190677 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 872-33 chr3 115462040 115462548 + 2 NA Intergenic L2a|LINE|L2 -161216 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 596-140 chr5 174510578 174511163 + 2 NA intron (NR_125806, intron 2 of 5) Charlie8|DNA|hAT-Charlie 174516 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 308-113 chr12 94389006 94389216 + 2 NA intron (NM_001368042, intron 3 of 5) AluSz|SINE|Alu 70756 NM_001346457 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 342-572 chrX 98709254 98709469 + 2 NA Intergenic L1PREC2|LINE|L1 -1144826 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 162-48 chr18 60161988 60162142 + 2 NA Intergenic Intergenic 210710 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 398-134 chr16 89159796 89160124 + 2 NA intron (NR_024347, intron 2 of 3) intron (NR_024347, intron 2 of 3) 740 NR_024347 283860 Hs.739138 NM_173617 ENSG00000180422 LINC00304 C16orf81|NCRNA00304 long intergenic non-protein coding RNA 304 ncRNA 270-336 chr6 121011073 121011267 + 2 NA Intergenic LTR85b|LTR|Gypsy? 323310 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 138-7 chr1 236034610 236034701 + 2 NA intron (NM_002508, intron 5 of 19) L1MB7|LINE|L1 30435 NM_002508 4811 Hs.356624 NM_002508 ENSG00000116962 NID1 NID nidogen 1 protein-coding 313-550 chr8 144917206 144917473 + 2 NA Intergenic AluSg|SINE|Alu -15162 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 284-253 chr3 17998825 17999027 + 2 NA intron (NR_161333, intron 1 of 4) intron (NR_161333, intron 1 of 4) 36374 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 446-219 chr4 83989050 83989304 + 2 NA intron (NR_125909, intron 8 of 8) L1ME4b|LINE|L1 309992 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 255-293 chr4 56068402 56068614 + 2 NA Intergenic L2a|LINE|L2 -101687 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 251-70 chr12 75008989 75009196 + 2 NA Intergenic L1MEh|LINE|L1 200656 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 363-43 chr10 25276902 25277146 + 2 NA intron (NM_020752, intron 2 of 10) AluJr|SINE|Alu -100748 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 184-165 chr8 58902598 58902727 + 2 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) 216485 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 310-103 chr12 45491761 45491945 + 2 NA Intergenic Intergenic 199163 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 260-2 chr1 42019663 42019896 + 2 NA intron (NR_038261, intron 1 of 3) L1ME3A|LINE|L1 16155 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 490-73 chr12 68928356 68928665 + 2 NA intron (NM_001874, intron 2 of 8) MIRb|SINE|MIR 4661 NM_198320 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 267-82 chr12 28685839 28685981 + 2 NA Intergenic L1MC2|LINE|L1 -463368 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 636-81 chr2 141790775 141791268 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 340680 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 602-60 chr2 81820518 81821029 + 2 NA Intergenic Intergenic -353827 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 430-67 chr12 75989826 75990196 + 2 NA Intergenic L1P3|LINE|L1 41765 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 426-111 chr18 5337871 5338287 + 2 NA Intergenic L1M4|LINE|L1 -41026 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 367-144 chr16 13855330 13855682 + 2 NA Intergenic LTR85c|LTR|Gypsy? -64651 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 349-11 chr1 49896669 49897000 + 2 NA intron (NM_001323575, intron 1 of 12) L1MA2|LINE|L1 127120 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 139-16 chr11 87484919 87485020 + 2 NA Intergenic L2b|LINE|L2 234442 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 391-137 chr17 52524211 52524526 + 2 NA intron (NR_146898, intron 1 of 3) intron (NR_146898, intron 1 of 3) 133846 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 521-90 chr15 68007966 68008376 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -46008 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 680-3 chr1 31211008 31211447 + 2 NA intron (NM_024522, intron 1 of 6) L1MB7|LINE|L1 28660 NM_024522 79570 Hs.470259 NM_024522 ENSG00000084628 NKAIN1 FAM77C sodium/potassium transporting ATPase interacting 1 protein-coding 239-55 chr11 29575234 29575420 + 2 NA Intergenic MIRc|SINE|MIR -19086 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 484-183 chr3 166996804 166997057 + 2 NA Intergenic MER52-int|LTR|ERV1 98247 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 901-19 chr3 138964540 138965068 + 2 NA Intergenic L1MEd|LINE|L1 17587 NM_001040061 401089 Hs.591303 NM_001040061 ENSG00000206262 FOXL2NB C3orf72 FOXL2 neighbor protein-coding 470-95 chr17 59913024 59913445 + 2 NA intron (NM_001272042, intron 3 of 13) intron (NM_001272042, intron 3 of 13) 20113 NR_161457 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 183-144 chr7 43213994 43214170 + 2 NA intron (NM_015052, intron 2 of 29) intron (NM_015052, intron 2 of 29) 63187 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 459-155 chr2 211855953 211856275 + 2 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 570246 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 301-335 chr4 133124446 133124708 + 2 NA intron (NR_125885, intron 7 of 8) intron (NR_125885, intron 7 of 8) 24539 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 549-78 chr17 6769747 6770198 + 2 NA intron (NR_046398, intron 3 of 4) L1MEd|LINE|L1 -6243 NM_153230 162517 Hs.368364 NM_153230 ENSG00000177294 FBXO39 CT144|Fbx39 F-box protein 39 protein-coding 385-342 chr6 136453883 136454128 + 2 NA intron (NM_001198617, intron 1 of 15) intron (NM_001198617, intron 1 of 15) 12870 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 341-527 chr8 88507846 88508140 + 2 NA Intergenic L1MA9|LINE|L1 -180510 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 220-312 chr6 10820731 10820944 + 2 NA intron (NR_134935, intron 2 of 14) A-rich|Low_complexity|Low_complexity 10040 NM_001242957 4117 Hs.446125 NM_005906 ENSG00000111837 MAK RP62 male germ cell associated kinase protein-coding 172-9 chr10 11111303 11111437 + 2 NA intron (NM_001326345, intron 1 of 13) intron (NM_001326345, intron 1 of 13) -5882 NR_046108 439950 Hs.568157 NR_046108 CELF2-AS2 - CELF2 antisense RNA 2 ncRNA 259-211 chr2 125562119 125562272 + 2 NA Intergenic Intergenic 555790 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 468-148 chr2 98140383 98140672 + 2 NA intron (NR_144297, intron 7 of 18) intron (NR_144297, intron 7 of 18) -9006 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 545-121 chr2 161909981 161910432 + 2 NA intron (NM_001354443, intron 15 of 25) intron (NM_001354443, intron 15 of 25) 164009 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 304-105 chr12 26624189 26624488 + 2 NA exon (NM_002223, exon 24 of 57) exon (NM_002223, exon 24 of 57) 208856 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 248-78 chr12 27477010 27477175 + 2 NA intron (NM_001145010, intron 5 of 8) L1M2|LINE|L1 10282 NM_001145010 341346 Hs.282121 NM_001145010 ENSG00000165935 SMCO2 C12orf70 single-pass membrane protein with coiled-coil domains 2 protein-coding 246-257 chr3 82800306 82800477 + 2 NA Intergenic L1ME1|LINE|L1 814249 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 307-326 chr4 13025492 13025677 + 2 NA Intergenic Intergenic 458756 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 536-41 chr10 130283430 130283873 + 2 NA Intergenic Intergenic 147242 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 406-175 chr21 28109752 28110028 + 2 NA intron (NR_126010, intron 2 of 4) intron (NR_126010, intron 2 of 4) 19487 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 574-58 chr17 71566157 71566653 + 2 NA Intergenic Intergenic -364226 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 286-146 chr16 9893123 9893323 + 2 NA intron (NM_001134408, intron 3 of 13) L1ME4a|LINE|L1 288844 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 261-380 chr8 98689030 98689247 + 2 NA intron (NM_001256313, intron 4 of 8) L1PA17|LINE|L1 136533 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 531-189 chr5 15975822 15976302 + 2 NA Intergenic L1M4c|LINE|L1 40880 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 217-312 chr5 146000459 146000632 + 2 NA intron (NM_152550, intron 3 of 9) intron (NM_152550, intron 3 of 9) 63967 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 365-142 chr16 56257735 56257929 + 2 NA intron (NM_138736, intron 2 of 7) intron (NM_138736, intron 2 of 7) 12312 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 244-203 chr20 50005301 50005473 + 2 NA Intergenic MIRc|SINE|MIR 22407 NM_005985 6615 Hs.48029 NM_005985 ENSG00000124216 SNAI1 SLUGH2|SNA|SNAH|SNAIL|SNAIL1|dJ710H13.1 snail family transcriptional repressor 1 protein-coding 364-155 chr16 61648436 61648727 + 2 NA 3' UTR (NM_001796, exon 12 of 12) 3' UTR (NM_001796, exon 12 of 12) 387857 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 405-314 chr8 26715583 26715872 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner 137322 NM_001244604 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 307-327 chr4 14479958 14480174 + 2 NA intron (NR_126435, intron 5 of 6) L1PB1|LINE|L1 368098 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 306-212 chr19 8714588 8714821 + 2 NA Intergenic L1M4c|LINE|L1 -15909 NM_178525 284382 Hs.209206 NM_178525 ENSG00000181786 ACTL9 HSD21 actin like 9 protein-coding 502-271 chr8 111458355 111458748 + 2 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 81912 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 293-161 chr18 7586710 7586993 + 2 NA intron (NM_002845, intron 1 of 30) Charlie2a|DNA|hAT-Charlie 19535 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 351-500 chr8 134400392 134400696 + 2 NA Intergenic Intergenic -197527 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 331-267 chr2 76641648 76641909 + 2 NA Intergenic Intergenic -344187 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 607-20 chr10 60106841 60107374 + 2 NA intron (NM_001204403, intron 28 of 43) intron (NM_001204403, intron 28 of 43) 33909 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 386-42 chr10 103213947 103214181 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -20758 NM_001351175 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 259-44 chr10 50923926 50924114 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -38345 NM_138933 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 327-239 chr2 20159463 20159708 + 2 NA Intergenic L1MD1|LINE|L1 65545 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 454-193 chr21 29492177 29492503 + 2 NA Intergenic Intergenic -3707 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 266-114 chr14 55930787 55930964 + 2 NA Intergenic L1MEd|LINE|L1 -134201 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 253-103 chr12 52485796 52485957 + 2 NA Intergenic L1MC3|LINE|L1 7381 NM_005554 3853 Hs.700779 NM_005554 ENSG00000205420 KRT6A CK-6C|CK-6E|CK6A|CK6C|CK6D|K6A|K6C|K6D|KRT6C|KRT6D|PC3 keratin 6A protein-coding 244-9 chr1 73696004 73696242 + 2 NA intron (NR_146300, intron 1 of 3) (TTATA)n|Simple_repeat|Simple_repeat 21444 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 335-4 chr1 48990154 48990467 + 2 NA intron (NM_001323575, intron 5 of 12) L1MA3|LINE|L1 -213341 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 128-66 chr7 3952742 3952847 + 2 NA intron (NM_152744, intron 7 of 44) intron (NM_152744, intron 7 of 44) -176891 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 452-95 chr15 96218442 96218824 + 2 NA intron (NR_125738, intron 2 of 4) THE1B|LTR|ERVL-MaLR -90792 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 437-174 chr3 77542101 77542479 + 2 NA intron (NM_001290039, intron 7 of 26) intron (NM_001290039, intron 7 of 26) 444278 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 406-256 chr6 27706562 27706916 + 2 NA non-coding (NR_038292, exon 3 of 3) non-coding (NR_038292, exon 3 of 3) 12660 NR_038292 100507173 Hs.635987 NR_038292 ENSG00000281706 LINC01012 - long intergenic non-protein coding RNA 1012 ncRNA 320-333 chr3 6582955 6583148 + 2 NA Intergenic L1MC2|LINE|L1 222398 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 528-79 chr14 21063175 21063528 + 2 NA intron (NM_001282211, intron 1 of 14) intron (NM_001282211, intron 1 of 14) 5529 NM_138331 122665 Hs.553572 NM_138331 ENSG00000173431 RNASE8 RAE2 ribonuclease A family member 8 protein-coding 308-368 chr5 3062311 3062482 + 2 NA Intergenic AluSg|SINE|Alu -115439 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 352-541 chr8 118391062 118391342 + 2 NA intron (NM_001349811, intron 3 of 4) intron (NM_001349811, intron 3 of 4) -229799 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 339-262 chr2 69965901 69966200 + 2 NA intron (NR_033872, intron 9 of 10) intron (NR_033872, intron 9 of 10) -3785 NM_152792 151516 Hs.516253 NM_152792 ENSG00000244617 ASPRV1 MUNO|SASP|SASPase|Taps aspartic peptidase retroviral like 1 protein-coding 372-365 chr4 75020882 75021179 + 2 NA intron (NM_015393, intron 2 of 3) L2b|LINE|L2 -50668 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 336-177 chr15 66504405 66504681 + 2 NA promoter-TSS (NM_001287822) promoter-TSS (NM_001287822) 312 NM_000968 6124 Hs.186350 NM_000968 ENSG00000174444 RPL4 L4 ribosomal protein L4 protein-coding 680-74 chr20 39355867 39356250 + 2 NA Intergenic L1ME3|LINE|L1 -131310 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 298-339 chr4 114169488 114169773 + 2 NA Intergenic LTR67B|LTR|ERVL -189983 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 474-51 chr11 104602798 104603266 + 2 NA intron (NR_120585, intron 1 of 3) Tigger2b_Pri|DNA|TcMar-Tigger 6270 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 167-102 chr6 55361216 55361358 + 2 NA intron (NM_207410, intron 6 of 8) MER2|DNA|TcMar-Tigger 33818 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 383-418 chr9 138093858 138094134 + 2 NA intron (NM_001243812, intron 35 of 45) L1MB3|LINE|L1 -48925 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 312-229 chr2 44164267 44164459 + 2 NA Intergenic AluSg|SINE|Alu -4440 NM_177969 5495 Hs.416769 NM_002706 ENSG00000138032 PPM1B PP2C-beta|PP2C-beta-X|PP2CB|PP2CBETA|PPC2BETAX protein phosphatase, Mg2+/Mn2+ dependent 1B protein-coding 178-40 chr12 128237672 128237807 + 2 NA Intergenic LTR33|LTR|ERVL -29664 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 362-23 chr1 109542242 109542455 + 2 NA intron (NM_031936, intron 1 of 2) intron (NM_031936, intron 1 of 2) 2476 NM_031936 83873 Hs.709782 NM_031936 ENSG00000156097 GPR61 BALGR|GPCR3 G protein-coupled receptor 61 protein-coding 258-442 chrX 99478938 99479131 + 2 NA Intergenic L1MA6|LINE|L1 931239 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 254-119 chr14 72351170 72351386 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -165542 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 138-79 chr7 11340843 11340964 + 2 NA Intergenic Intergenic 367031 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 238-187 chr2 143856354 143856551 + 2 NA Intergenic L2a|LINE|L2 -80615 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 311-225 chr19 23918587 23918752 + 2 NA intron (NM_001244038, intron 1 of 3) intron (NM_001244038, intron 1 of 3) 3783 NM_001244038 730087 Hs.655305 NM_001190829 ENSG00000213967 ZNF726 ZNF92P3 zinc finger protein 726 protein-coding 503-311 chr9 137695066 137695547 + 2 NA intron (NM_001354612, intron 1 of 8) intron (NM_001354612, intron 1 of 8) 76301 NM_001354259 79813 Hs.495511 NM_024757 ENSG00000181090 EHMT1 EHMT1-IT1|EUHMTASE1|Eu-HMTase1|FP13812|GLP|GLP1|KLEFS1|KMT1D euchromatic histone lysine methyltransferase 1 protein-coding 214-318 chr8 75043850 75044060 + 2 NA Intergenic L1PA15-16|LINE|L1 43800 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 351-95 chr12 77696238 77696494 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -134528 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 144-85 chr5 125860082 125860222 + 2 NA Intergenic L1PA7|LINE|L1 -319425 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 752-31 chr18 37974227 37974751 + 2 NA Intergenic L2a|LINE|L2 317354 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 485-106 chr17 40390582 40390898 + 2 NA intron (NM_001067, intron 33 of 34) AluSx|SINE|Alu -26003 NM_152219 125111 Hs.444663 NM_152219 ENSG00000183153 GJD3 CX31.9|Cx30.2|GJA11|GJC1 gap junction protein delta 3 protein-coding 245-193 chr2 84345538 84345774 + 2 NA Intergenic L1PA8A|LINE|L1 54974 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 380-410 chr8 129691147 129691484 + 2 NA Intergenic Intergenic -11076 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 494-291 chr8 112986674 112986975 + 2 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 343331 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 255-177 chr19 14954846 14955045 + 2 NA intron (NR_073589, intron 6 of 8) intron (NR_073589, intron 6 of 8) 13456 NM_012377 26658 Hs.589620 NM_012377 ENSG00000127529 OR7C2 CIT-HSP-87M17|OR19-18|OR7C3 olfactory receptor family 7 subfamily C member 2 protein-coding 439-281 chr8 80732189 80732441 + 2 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 142153 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 313-23 chr1 158704626 158704876 + 2 NA Intergenic Intergenic -4055 NM_001005279 81448 Hs.554489 NM_001005279 ENSG00000196171 OR6K2 OR1-17 olfactory receptor family 6 subfamily K member 2 protein-coding 255-420 chr8 66910003 66910205 + 2 NA intron (NM_173518, intron 14 of 14) THE1D-int|LTR|ERVL-MaLR 12445 NR_002598 641648 NR_002598 ENSG00000254341 SNORD87 HBII-276|U87 small nucleolar RNA, C/D box 87 snoRNA 294-476 chr8 123240372 123240563 + 2 NA intron (NM_001204180, intron 2 of 5) MIRb|SINE|MIR 910 NM_032847 84933 Hs.707401 NM_032847 ENSG00000189376 C8orf76 - chromosome 8 open reading frame 76 protein-coding 234-208 chr20 10364980 10365133 + 2 NA Intergenic MER21B|LTR|ERVL 66869 NM_018848 8195 Hs.472119 NM_018848 ENSG00000125863 MKKS BBS6|HMCS|KMS|MKS McKusick-Kaufman syndrome protein-coding 364-411 chr7 42619169 42619413 + 2 NA Intergenic L3|LINE|CR1 87156 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 530-53 chr12 19673986 19674439 + 2 NA Intergenic L1ME3|LINE|L1 233613 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 340-249 chr2 61952816 61953052 + 2 NA intron (NM_152516, intron 1 of 2) L1ME1|LINE|L1 47292 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 201-232 chr7 153595665 153595848 + 2 NA Intergenic L1MA3|LINE|L1 -152377 NM_001364498 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 228-356 chr8 135316404 135316585 + 2 NA Intergenic Intergenic 82363 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 255-346 chr5 180281858 180282071 + 2 NA intron (NM_139070, intron 1 of 11) intron (NM_139070, intron 1 of 11) -1356 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 457-138 chr20 11047621 11047952 + 2 NA Intergenic LFSINE_Vert|SINE|tRNA 21242 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 222-87 chr12 85546287 85546441 + 2 NA Intergenic Intergenic 266144 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 140-22 chr13 64732174 64732273 + 2 NA Intergenic Intergenic -656212 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 306-233 chr2 52073949 52074201 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -296573 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 476-115 chr18 433239 433683 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 67240 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 258-29 chr1 199328920 199329141 + 2 NA intron (NR_147896, intron 3 of 3) L1MEd|LINE|L1 180432 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 179-102 chr6 37277044 37277139 + 2 NA intron (NR_130108, intron 2 of 12) intron (NR_130108, intron 2 of 12) -18936 NR_104443 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 402-253 chr4 162593909 162594145 + 2 NA Intergenic Intergenic -429993 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 282-491 chr9 95674857 95675071 + 2 NA Intergenic Intergenic -157907 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 245-358 chr8 129037947 129038142 + 2 NA Intergenic L1MC2|LINE|L1 -72043 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 324-463 chr6 61588533 61588746 + 2 NA intron (NR_146870, intron 14 of 15) AluJb|SINE|Alu 14509 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 219-349 chr8 32348042 32348215 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -92618 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 220-90 chr12 64151846 64152023 + 2 NA 3' UTR (NM_020762, exon 22 of 22) 3' UTR (NM_020762, exon 22 of 22) 70362 NM_001300940 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 593-127 chr6 153875087 153875593 + 2 NA Intergenic Intergenic -135156 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 135-5 chr1 217296101 217296172 + 2 NA Intergenic Intergenic -158434 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 295-156 chr15 91579356 91579509 + 2 NA Intergenic Intergenic 116093 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 901-10 chr14 20331157 20331808 + 2 NA intron (NM_182852, intron 1 of 7) intron (NM_182852, intron 1 of 7) 1797 NM_021178 57820 Hs.107003 NM_021178 ENSG00000100814 CCNB1IP1 C14orf18|HEI10 cyclin B1 interacting protein 1 protein-coding 551-88 chr2 68699945 68700293 + 2 NA Intergenic AluJb|SINE|Alu -34692 NM_001166277 9938 Hs.531807 NM_014882 ENSG00000163219 ARHGAP25 HEL-S-308|KAIA0053 Rho GTPase activating protein 25 protein-coding 169-95 chr5 23910723 23910852 + 2 NA Intergenic Intergenic -40561 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 224-21 chr1 223372835 223372997 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -8740 NM_017982 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 193-178 chr6 126204227 126204401 + 2 NA Intergenic Intergenic -135475 NM_001286525 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 361-410 chr7 30834257 30834585 + 2 NA intron (NR_037598, intron 8 of 19) THE1B-int|LTR|ERVL-MaLR 63004 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 232-36 chr10 66468077 66468251 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -457872 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 275-361 chr8 89178187 89178400 + 2 NA Intergenic LTR22B1|LTR|ERVK 579418 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 323-412 chr5 55895785 55896027 + 2 NA intron (NM_001297572, intron 6 of 10) intron (NM_001297572, intron 6 of 10) 42584 NM_001242639 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 225-76 chr12 111278628 111278818 + 2 NA intron (NM_015267, intron 4 of 21) intron (NM_015267, intron 4 of 21) -25419 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 471-142 chr2 222358166 222358524 + 2 NA TTS (NR_136642) TTS (NR_136642) 37684 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 414-136 chr19 28523823 28524194 + 2 NA intron (NR_110759, intron 5 of 9) PABL_A-int|LTR|ERV1 -82680 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 532-225 chr6 67568335 67568795 + 2 NA Intergenic L1M4a2|LINE|L1 -486786 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 306-79 chr11 50719576 50719801 + 2 NA Intergenic ALR/Alpha|Satellite|centr 310541 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 610-46 chr14 44346633 44347098 + 2 NA Intergenic Intergenic 160418 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 532-155 chr3 3999842 4000227 + 2 NA Intergenic Intergenic -199159 NR_149025 100130207 Hs.587205 NR_149025 ENSG00000144455 LOC100130207 - uncharacterized LOC100130207 ncRNA 243-337 chr4 124500461 124500646 + 2 NA non-coding (NR_110838, exon 9 of 9) non-coding (NR_110838, exon 9 of 9) 57881 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 378-46 chr1 242857078 242857339 + 2 NA Intergenic MIR3|SINE|MIR 244536 NR_029401 731275 Hs.722350 NR_029401 ENSG00000214837 LINC01347 - long intergenic non-protein coding RNA 1347 ncRNA 337-484 chr6 51582136 51582427 + 2 NA Intergenic HAL1|LINE|L1 -39589 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 474-164 chr2 226969508 226969816 + 2 NA intron (NM_001349069, intron 8 of 8) MER121|DNA|hAT? 133608 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 532-167 chr3 101045161 101045560 + 2 NA Intergenic L2|LINE|L2 -51870 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 364-424 chr7 112093668 112093974 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 112578 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 364-224 chr2 126472948 126473158 + 2 NA Intergenic Intergenic -182882 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 348-222 chr2 59354308 59354597 + 2 NA Intergenic MIRb|SINE|MIR 136744 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 353-42 chr1 240310236 240310499 + 2 NA intron (NM_020066, intron 8 of 17) intron (NM_020066, intron 8 of 17) 218484 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 375-400 chr8 43299334 43299576 + 2 NA intron (NM_001005365, intron 3 of 13) AluJb|SINE|Alu 7013 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 477-300 chr9 69283094 69283507 + 2 NA Intergenic L1MEi|LINE|L1 23756 NR_047671 100885775 Hs.49768 NR_047671 ENSG00000278910 BANCR LINC00586 BRAF-activated non-protein coding RNA ncRNA 134-32 chr14 57336533 57336661 + 2 NA Intergenic Intergenic -53989 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 324-198 chr16 26699994 26700313 + 2 NA Intergenic L1MB8|LINE|L1 -366774 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 352-368 chr4 65535933 65536182 + 2 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 133431 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 415-278 chr8 53928836 53929071 + 2 NA intron (NR_104579, intron 1 of 3) L1ME1|LINE|L1 48081 NM_003702 8601 Hs.368733 NM_003702 ENSG00000147509 RGS20 RGSZ1|ZGAP1|g(z)GAP|gz-GAP regulator of G protein signaling 20 protein-coding 553-99 chr19 37602098 37602529 + 2 NA intron (NM_001172225, intron 4 of 4) L2a|LINE|L2 7437 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 315-234 chr2 52246943 52247183 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -123585 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 218-244 chr4 72938283 72938451 + 2 NA Intergenic Intergenic 131349 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 510-144 chr2 65013625 65013993 + 2 NA intron (NM_001193493, intron 4 of 6) intron (NM_001193493, intron 4 of 6) 24410 NM_003038 6509 Hs.654352 NM_003038 ENSG00000115902 SLC1A4 ASCT1|SATT|SPATCCM solute carrier family 1 member 4 protein-coding 313-373 chr4 319422 319707 + 2 NA Intergenic Intergenic -14090 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 262-65 chr10 117389743 117389980 + 2 NA Intergenic L2b|LINE|L2 -14421 NM_173791 118987 Hs.501149 NM_173791 ENSG00000165650 PDZD8 PDZK8 PDZ domain containing 8 protein-coding 332-188 chr16 82813785 82814105 + 2 NA intron (NR_110938, intron 1 of 2) MIRb|SINE|MIR 40626 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 269-391 chr7 138562595 138562821 + 2 NA intron (NM_015905, intron 9 of 18) HERV3-int|LTR|ERV1 101516 NM_174959 136306 Hs.99414 NM_174959 ENSG00000157703 SVOPL - SVOP like protein-coding 365-94 chr12 29884362 29884648 + 2 NA Intergenic MER4B|LTR|ERV1 -99746 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 262-144 chr15 68366624 68366780 + 2 NA intron (NM_001004439, intron 3 of 29) intron (NM_001004439, intron 3 of 29) 65461 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 248-29 chr10 18756976 18757170 + 2 NA Intergenic L2a|LINE|L2 97642 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 257-378 chr7 27804075 27804237 + 2 NA intron (NM_001362795, intron 13 of 14) Charlie1a|DNA|hAT-Charlie 64061 NM_001362794 8887 Hs.34576 NM_006024 ENSG00000106052 TAX1BP1 CALCOCO3|T6BP|TXBP151 Tax1 binding protein 1 protein-coding 539-35 chr10 115412581 115412994 + 2 NA intron (NM_207303, intron 20 of 28) intron (NM_207303, intron 20 of 28) 319422 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 299-431 chr7 126270206 126270385 + 2 NA Intergenic L1MA9|LINE|L1 787889 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 338-294 chr20 19414436 19414656 + 2 NA intron (NM_020689, intron 2 of 16) L1ME4a|LINE|L1 -129950 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 261-367 chr8 21677939 21678094 + 2 NA Intergenic L2a|LINE|L2 110859 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 313-454 chr5 159602060 159602356 + 2 NA Intergenic MER21C|LTR|ERVL -135932 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 302-153 chr16 20633350 20633551 + 2 NA intron (NR_134918, intron 8 of 10) L1MB4|LINE|L1 -57083 NM_182617 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 428-138 chr2 133491355 133491726 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 76923 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 301-480 chr9 30768255 30768495 + 2 NA Intergenic Intergenic -359921 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 292-373 chr6 33834508 33834699 + 2 NA Intergenic Intergenic -30600 NM_001040109 4295 Hs.2813 NM_002418 ENSG00000096395 MLN - motilin protein-coding 543-112 chr2 7908730 7909234 + 2 NA Intergenic Intergenic -9327 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 617-104 chr5 17354398 17354847 + 2 NA Intergenic CpG 32688 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 243-124 chr14 56315929 56316091 + 2 NA Intergenic Intergenic 197599 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 218-212 chr3 58923517 58923709 + 2 NA intron (NR_147235, intron 6 of 6) L1ME2|LINE|L1 99142 NR_110820 101929238 Hs.683953 NR_110820 ENSG00000242428 C3orf67-AS1 - C3orf67 antisense RNA 1 ncRNA 436-130 chr2 56734902 56735228 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -549295 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 242-100 chr14 31778577 31778759 + 2 NA intron (NM_001201574, intron 1 of 5) MER101-int|LTR|ERV1 64099 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 216-265 chr4 156803460 156803619 + 2 NA intron (NM_016205, intron 3 of 5) HAL1|LINE|L1 168260 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 469-40 chr10 90850630 90850993 + 2 NA intron (NM_019860, intron 1 of 2) L1ME2|LINE|L1 7228 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 367-12 chr1 60751869 60752085 + 2 NA intron (NR_110628, intron 1 of 5) intron (NR_110628, intron 1 of 5) 73607 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 441-214 chr5 164160372 164160653 + 2 NA Intergenic Intergenic 306890 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 435-210 chr5 153602729 153603006 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 110695 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 279-252 chr3 41007301 41007492 + 2 NA Intergenic L1M4c|LINE|L1 -192109 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 266-123 chr14 94846761 94846959 + 2 NA Intergenic Intergenic 76218 NR_144432 108868751 NR_144432 GSC-DT DIGIT GSC divergent transcript ncRNA 277-419 chr8 108408547 108408721 + 2 NA Intergenic Intergenic -34949 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 310-509 chr8 49364241 49364477 + 2 NA Intergenic L1MA4|LINE|L1 147821 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 408-50 chr10 127290342 127290639 + 2 NA intron (NM_001290223, intron 29 of 51) L1MD2|LINE|L1 -93899 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 313-262 chr2 96686167 96686342 + 2 NA exon (NM_001293083, exon 23 of 53) exon (NM_001293083, exon 23 of 53) 43490 NM_001293083 90342 Hs.534025 NM_001077400 ENSG00000249715 FER1L5 - fer-1 like family member 5 protein-coding 486-52 chr11 110496939 110497336 + 2 NA Intergenic Intergenic 67189 NM_004109 2230 Hs.744 NM_004109 ENSG00000137714 FDX1 ADX|FDX|LOH11CR1D ferredoxin 1 protein-coding 314-234 chr18 5924104 5924356 + 2 NA Intergenic MIRb|SINE|MIR -28276 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 206-104 chr2 4919150 4919283 + 2 NA Intergenic Intergenic -262994 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 554-6 chr1 58925578 58926009 + 2 NA Intergenic L2a|LINE|L2 -94683 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 641-40 chr15 41484571 41485007 + 2 NA Intergenic Intergenic -9085 NM_002220 3706 Hs.2722 NM_002220 ENSG00000137825 ITPKA IP3-3KA|IP3KA inositol-trisphosphate 3-kinase A protein-coding 267-64 chr11 31141026 31141255 + 2 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) -148454 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 331-204 chr17 52018788 52018987 + 2 NA intron (NM_001082533, intron 3 of 9) MSTB|LTR|ERVL-MaLR 139827 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 318-161 chr13 70203049 70203332 + 2 NA Intergenic L1ME3D|LINE|L1 -94697 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 124-12 chr11 80470193 80470308 + 2 NA Intergenic Intergenic 292553 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 357-24 chr1 224812421 224812610 + 2 NA Intergenic AluSz|SINE|Alu -117139 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 292-293 chr3 145473309 145473586 + 2 NA Intergenic Intergenic 595738 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 828-31 chr3 99931198 99932007 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 32796 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 482-80 chr14 80305356 80305624 + 2 NA intron (NR_038355, intron 2 of 8) L2b|LINE|L2 -74433 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 332-218 chr19 1057825 1057995 + 2 NA intron (NM_019112, intron 35 of 46) intron (NM_019112, intron 35 of 46) -8049 NM_001258328 23526 Hs.465521 NM_012292 ENSG00000180448 ARHGAP45 HA-1|HLA-HA1|HMHA1 Rho GTPase activating protein 45 protein-coding 223-279 chr5 73398665 73398851 + 2 NA Intergenic Intergenic 50019 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 394-195 chr2 197315221 197315516 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -4588 NM_001367497 91526 Hs.432706 NM_153697 ENSG00000065413 ANKRD44 PP6-ARS-B ankyrin repeat domain 44 protein-coding 439-88 chr14 47677034 47677329 + 2 NA Intergenic Intergenic -2227 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 264-266 chr3 26793460 26793682 + 2 NA Intergenic Intergenic 99014 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 264-406 chr8 36895774 36895969 + 2 NA intron (NM_001031836, intron 19 of 26) Cheshire|DNA|hAT-Charlie 111497 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 422-158 chr2 174199367 174199719 + 2 NA intron (NM_001011708, intron 3 of 9) Charlie1a|DNA|hAT-Charlie 48989 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 372-529 chrX 99049256 99049459 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 1360916 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 334-154 chr14 70970030 70970242 + 2 NA intron (NM_014982, intron 5 of 35) AluJr|SINE|Alu 62677 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 480-238 chr5 85094016 85094392 + 2 NA Intergenic Intergenic -709324 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 175-60 chr16 59926133 59926294 + 2 NA intron (NR_110917, intron 1 of 3) L1MEc|LINE|L1 70860 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 481-154 chr2 136752701 136753063 + 2 NA Intergenic L2|LINE|L2 -12663 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 305-294 chr2 226486005 226486194 + 2 NA Intergenic Intergenic 172694 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 288-349 chr5 153579250 153579482 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 87194 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 240-31 chr1 234449916 234450142 + 2 NA intron (NM_005646, intron 10 of 29) intron (NM_005646, intron 10 of 29) 29150 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 171-23 chr11 119560123 119560245 + 2 NA Intergenic Intergenic -135199 NM_001311162 7070 Hs.644697 NM_006288 ENSG00000154096 THY1 CD90|CDw90 Thy-1 cell surface antigen protein-coding 480-244 chr5 154571885 154572157 + 2 NA Intergenic MIRb|SINE|MIR 24051 NR_036094 100422950 NR_036094 ENSG00000264760 MIR3141 mir-3141 microRNA 3141 ncRNA 337-487 chr6 64217849 64218119 + 2 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 411148 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 459-326 chr9 26579734 26580054 + 2 NA Intergenic AluSc8|SINE|Alu 312908 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 335-242 chr2 55206052 55206242 + 2 NA intron (NR_148540, intron 5 of 9) MIR3|SINE|MIR -25756 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 292-173 chr17 68863434 68863633 + 2 NA Intergenic L1MEf|LINE|L1 91859 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 354-60 chr10 107875533 107875788 + 2 NA intron (NR_125760, intron 4 of 4) MER34B-int|LTR|ERV1 193633 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 274-425 chrX 149109572 149109844 + 2 NA Intergenic L1PA16|LINE|L1 390617 NM_001170628 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 226-208 chr21 43190500 43190653 + 2 NA Intergenic AluJr|SINE|Alu 20340 NM_001320719 102724652 Hs.184085 NM_001314050 ENSG00000276076 CRYAA2 CRYAA crystallin alpha A2 protein-coding 260-351 chr5 60898148 60898373 + 2 NA intron (NM_001007233, intron 10 of 12) intron (NM_001007233, intron 10 of 12) 46810 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 948-41 chrX 94608653 94609288 + 2 NA Intergenic L1MA1|LINE|L1 454256 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 141-71 chr5 27920059 27920161 + 2 NA Intergenic L1MB8|LINE|L1 367555 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 217-44 chr10 61064044 61064176 + 2 NA Intergenic Intergenic 47835 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 603-112 chr3 114725308 114725792 + 2 NA intron (NM_001348801, intron 4 of 11) intron (NM_001348801, intron 4 of 11) 17975 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 271-291 chr4 10857508 10857690 + 2 NA Intergenic Intergenic -172831 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 589-160 chr8 116526445 116526995 + 2 NA Intergenic Intergenic -125380 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 343-97 chr12 14046008 14046232 + 2 NA Intergenic Intergenic -65764 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 264-35 chr10 20384960 20385160 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -166910 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 821-12 chr12 30323498 30324087 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 353452 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 338-199 chr16 63879754 63880024 + 2 NA Intergenic L1ME1|LINE|L1 1242174 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 524-117 chr2 117170276 117170611 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -644248 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 280-254 chr3 43711095 43711258 + 2 NA intron (NR_158560, intron 3 of 5) intron (NR_158560, intron 3 of 5) -19582 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 299-124 chr13 102983309 102983523 + 2 NA Intergenic Intergenic 83001 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 405-71 chr12 111293577 111293873 + 2 NA intron (NM_015267, intron 6 of 21) MIRb|SINE|MIR -10417 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 355-76 chr10 130298868 130299122 + 2 NA Intergenic Intergenic 162586 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 199-258 chr9 81486984 81487108 + 2 NA Intergenic L1MC5|LINE|L1 202489 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 252-107 chr13 108524786 108524983 + 2 NA Intergenic Intergenic -71021 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 458-76 chr14 66434545 66434858 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -51670 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 385-317 chr6 22518039 22518367 + 2 NA Intergenic Intergenic -51363 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 553-82 chr17 3390410 3390792 + 2 NA Intergenic Intergenic 7809 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 272-270 chr3 68452706 68452951 + 2 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) -47809 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 328-125 chr13 35943673 35943879 + 2 NA intron (NM_001330071, intron 4 of 16) intron (NM_001330071, intron 4 of 16) -87915 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 245-141 chr15 54048987 54049224 + 2 NA intron (NM_001329919, intron 2 of 31) intron (NM_001329919, intron 2 of 31) 36457 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 374-219 chr20 14819811 14820092 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 109567 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 213-207 chr4 76267708 76267885 + 2 NA intron (NM_001242939, intron 3 of 6) L1MB7|LINE|L1 16075 NM_001136570 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 609-37 chr15 93295445 93295879 + 2 NA Intergenic L1ME4a|LINE|L1 89596 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 273-134 chr14 61886978 61887205 + 2 NA intron (NM_001367661, intron 2 of 8) Tigger1|DNA|TcMar-Tigger -40604 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 341-521 chr8 77473779 77473969 + 2 NA intron (NR_125830, intron 2 of 2) intron (NR_125830, intron 2 of 2) 23177 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 760 chr1 48344580 48345112 + 2 NA intron (NM_001286238, intron 11 of 12) L1PA13|LINE|L1 122130 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 547-78 chr16 79008510 79008882 + 2 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 592041 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 148-81 chr6 163230084 163230190 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -38135 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 358-395 chr5 179015477 179015698 + 2 NA Intergenic MER4C|LTR|ERV1 -8217 NM_001353372 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 286-451 chr8 82112813 82113063 + 2 NA Intergenic LOR1b|LTR|ERV1 -270652 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 510-181 chr3 9220001 9220432 + 2 NA TTS (NR_103443) TTS (NR_103443) 3321 NR_103443 100288831 Hs.694646 NR_103443 ENSG00000227929 SRGAP3-AS3 - SRGAP3 antisense RNA 3 ncRNA 595-106 chr3 39553418 39553852 + 2 NA Intergenic L1PA7|LINE|L1 51569 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 364-184 chr18 40097194 40097429 + 2 NA intron (NR_110791, intron 3 of 3) intron (NR_110791, intron 3 of 3) 31025 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 289-433 chr7 16828403 16828590 + 2 NA Intergenic L1M1|LINE|L1 -23497 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 316-366 chr3 146946818 146947109 + 2 NA Intergenic L1PA13|LINE|L1 25040 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 149-49 chr2 23804746 23804881 + 2 NA intron (NR_125717, intron 19 of 28) A-rich|Low_complexity|Low_complexity 122310 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 493-312 chr9 27907979 27908365 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -334306 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 423-127 chr2 46056326 46056640 + 2 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -240924 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 466-83 chr14 87650612 87651069 + 2 NA intron (NR_146551, intron 1 of 2) THE1D|LTR|ERVL-MaLR 4454 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 429-7 chr1 74181390 74181703 + 2 NA intron (NM_001105659, intron 3 of 7) intron (NM_001105659, intron 3 of 7) 16630 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 271-249 chr22 31028558 31028816 + 2 NA Intergenic L1MDa|LINE|L1 -52631 NM_006932 6525 Hs.149098 NM_006932 ENSG00000183963 SMTN - smoothelin protein-coding 541-15 chr10 31942625 31943042 + 2 NA Intergenic Intergenic -13957 NM_001270697 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 718-23 chr14 62574729 62575291 + 2 NA Intergenic L1MA1|LINE|L1 -435037 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 333-397 chr4 73797494 73797689 + 2 NA Intergenic L1MC3|LINE|L1 -39087 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 453-241 chr7 9900816 9901096 + 2 NA Intergenic Intergenic 266686 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 219-213 chr21 20635650 20635833 + 2 NA Intergenic Intergenic 167367 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 274-269 chr3 145111016 145111217 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 958069 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 313-37 chr1 247058771 247059046 + 2 NA intron (NM_033213, intron 1 of 3) L1MC|LINE|L1 19903 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 261-149 chr17 69791347 69791576 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -170246 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 226-22 chr1 195621295 195621416 + 2 NA Intergenic L1PA13|LINE|L1 467360 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 372-287 chr20 46790572 46790759 + 2 NA Intergenic Intergenic 81016 NM_030777 81031 Hs.305971 NM_030777 ENSG00000197496 SLC2A10 ATORS|ATS|GLUT10 solute carrier family 2 member 10 protein-coding 356-263 chr2 148000108 148000359 + 2 NA intron (NM_001190879, intron 1 of 14) HAL1|LINE|L1 20504 NM_001190882 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 370-180 chr17 53316794 53317011 + 2 NA Intergenic HAL1|LINE|L1 331397 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 244-272 chr4 89340299 89340508 + 2 NA Intergenic L2a|LINE|L2 -32603 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 189-113 chr21 16804845 16804991 + 2 NA Intergenic Intergenic 214681 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 340-392 chr4 34891317 34891650 + 2 NA Intergenic Intergenic -621736 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 225-221 chr3 118120889 118121085 + 2 NA Intergenic L1ME3B|LINE|L1 -430062 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 331-541 chr8 127371962 127372162 + 2 NA intron (NR_117099, intron 3 of 3) MER5A|DNA|hAT-Charlie -28337 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 207-145 chr2 121976352 121976529 + 2 NA Intergenic Intergenic 220789 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 271-158 chr16 86363380 86363606 + 2 NA Intergenic L1ME4a|LINE|L1 -17814 NR_024406 732275 Hs.558087 NR_024406 ENSG00000168367 LINC00917 - long intergenic non-protein coding RNA 917 ncRNA 314-238 chr18 12120820 12121019 + 2 NA intron (NM_001277333, intron 10 of 13) L1MEc|LINE|L1 27076 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 409-234 chr4 164140772 164141175 + 2 NA intron (NM_001166373, intron 1 of 7) MER117|DNA|hAT-Charlie 56738 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 432-143 chr2 177477575 177477853 + 2 NA intron (NM_003659, intron 10 of 19) L1MB7|LINE|L1 75082 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 196-191 chr4 86292885 86293057 + 2 NA intron (NM_001363657, intron 2 of 13) Tigger10|DNA|TcMar-Tigger 61673 NM_001318067 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 204-266 chr7 18661843 18662004 + 2 NA intron (NM_001321878, intron 13 of 13) intron (NM_001321878, intron 13 of 13) 152653 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 376-360 chr6 165282777 165283017 + 2 NA intron (NM_144980, intron 7 of 8) intron (NM_144980, intron 7 of 8) 26708 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 151-83 chr8 23046372 23046508 + 2 NA intron (NM_147187, intron 1 of 9) L1MA7|LINE|L1 -21789 NR_038873 286059 Hs.306673 NR_038873 ENSG00000246130 LOC286059 - TNF receptor superfamily member 10d pseudogene pseudo 400-88 chr14 41758824 41759156 + 2 NA intron (NM_001346173, intron 1 of 4) L2c|LINE|L2 152134 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 235-259 chr4 73717651 73717847 + 2 NA Intergenic Intergenic -22820 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 592-173 chr8 87596878 87597396 + 2 NA Intergenic Intergenic 276878 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 168-17 chr11 23668329 23668465 + 2 NA Intergenic Intergenic -249207 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 337-309 chr20 37661850 37662101 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -14935 NR_040021 100287792 Hs.517026 NM_001001690 ENSG00000204117 LOC100287792 - uncharacterized LOC100287792 ncRNA 290-272 chr3 23539760 23539976 + 2 NA intron (NM_001370225, intron 5 of 5) MamRep434|DNA|TcMar-Tigger -266087 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 272-343 chr5 51656669 51656898 + 2 NA Intergenic Intergenic 273335 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 379-381 chr9 98430330 98430610 + 2 NA intron (NM_005458, intron 7 of 18) L1MEc|LINE|L1 -174821 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 386-188 chr2 163998248 163998462 + 2 NA Intergenic Intergenic -262347 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 235-110 chr15 54440290 54440511 + 2 NA intron (NM_001329919, intron 18 of 31) L1MA4A|LINE|L1 427752 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 298-288 chr3 34933527 34933732 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 460394 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 481-91 chr14 62209407 62209771 + 2 NA Intergenic MER31-int|LTR|ERV1 -69616 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 358-392 chr5 164357264 164357558 + 2 NA Intergenic Intergenic 109991 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 459-40 chr10 100324776 100325203 + 2 NA intron (NM_016112, intron 2 of 15) intron (NM_016112, intron 2 of 15) 5239 NM_001253837 9033 Hs.159241 NM_016112 ENSG00000107593 PKD2L1 PCL|PKD2L|PKDL|TRPP3 polycystin 2 like 1, transient receptor potential cation channel protein-coding 840 chr1 145807266 145807949 + 2 NA intron (NM_014455, intron 1 of 8) L1MA4A|LINE|L1 16488 NM_014455 27246 Hs.523550 NM_014455 ENSG00000265491 RNF115 BCA2|ZNF364 ring finger protein 115 protein-coding 283-147 chr15 59821927 59822147 + 2 NA Intergenic L1ME3E|LINE|L1 -132717 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 417-33 chr10 59495885 59496167 + 2 NA Intergenic LTR19C|LTR|ERV1 -132845 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 501-75 chr16 8335168 8335505 + 2 NA Intergenic L1ME5|LINE|L1 254502 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 307-30 chr1 206124779 206124998 + 2 NA Intergenic L1MB7|LINE|L1 -7500 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 321-253 chr18 59740319 59740579 + 2 NA Intergenic Intergenic -43026 NM_133459 147372 Hs.34333 NM_133459 ENSG00000183287 CCBE1 HKLLS1 collagen and calcium binding EGF domains 1 protein-coding 502-114 chr17 66287095 66287460 + 2 NA Intergenic Intergenic -15336 NM_002737 5578 Hs.531704 NM_002737 ENSG00000154229 PRKCA AAG6|PKC-alpha|PKCA|PKCI+/-|PKCalpha|PRKACA protein kinase C alpha protein-coding 275-205 chr2 137524827 137525049 + 2 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 402994 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 213-116 chr17 58646031 58646175 + 2 NA intron (NM_031272, intron 2 of 31) MER2|DNA|TcMar-Tigger 45952 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 542-142 chr3 145063391 145063898 + 2 NA Intergenic LTR37B|LTR|ERV1 1005541 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 349-323 chr3 16137815 16138060 + 2 NA Intergenic Intergenic -36743 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 348-524 chr8 90779622 90779822 + 2 NA Intergenic L1PA17|LINE|L1 -12053 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 374-33 chr10 54963486 54963775 + 2 NA intron (NM_001354404, intron 3 of 34) LTR85b|LTR|Gypsy? -162339 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 158-35 chr15 71073687 71073830 + 2 NA Intergenic Intergenic -67691 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 376-234 chr3 6295699 6295901 + 2 NA Intergenic Intergenic 509649 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 255-187 chr2 25355181 25355430 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -12715 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 500-92 chr15 27652271 27652677 + 2 NA Intergenic Intergenic 446841 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 593-159 chr8 138244829 138245264 + 2 NA intron (NM_015912, intron 6 of 19) intron (NM_015912, intron 6 of 19) -161501 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 358-402 chr6 55650981 55651235 + 2 NA Intergenic L1MB1|LINE|L1 -71894 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 343-355 chr3 116752052 116752388 + 2 NA Intergenic L1M5|LINE|L1 42432 NR_015391 285194 Hs.120364 NR_015391 TUSC7 LINC00902|LSAMP-AS1|LSAMP-AS3|LSAMPAS3|NCRNA00295 tumor suppressor candidate 7 ncRNA 332-373 chr4 43181477 43181736 + 2 NA Intergenic Intergenic 288340 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 229-357 chr7 40891995 40892154 + 2 NA Intergenic L1M4c|LINE|L1 87865 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 412-112 chr16 78921159 78921395 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 679460 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 252-407 chr7 120767351 120767546 + 2 NA Intergenic LTR39|LTR|ERV1 90696 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 322-392 chr4 123839965 123840190 + 2 NA intron (NR_027105, intron 4 of 5) intron (NR_027105, intron 4 of 5) 65813 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 356-72 chr11 14220698 14221036 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 137618 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 231-262 chr4 115528787 115528965 + 2 NA Intergenic L2a|LINE|L2 -415256 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 434-281 chr8 68869083 68869499 + 2 NA Intergenic Intergenic 234899 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 435-42 chr10 108632322 108632666 + 2 NA Intergenic Intergenic -563201 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 287-273 chr3 192748250 192748528 + 2 NA Intergenic Intergenic -20848 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 347-299 chr3 50923223 50923414 + 2 NA intron (NM_004947, intron 4 of 52) L1PB1|LINE|L1 248238 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 494-103 chr18 8097160 8097559 + 2 NA intron (NM_002845, intron 11 of 30) intron (NM_002845, intron 11 of 30) 269675 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 820-6 chr10 95302070 95302502 + 2 NA Intergenic L1MC4|LINE|L1 -11283 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 319-251 chr2 99660586 99660866 + 2 NA intron (NM_001025108, intron 11 of 23) intron (NM_001025108, intron 11 of 23) -170709 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 207-216 chr4 64692759 64692922 + 2 NA Intergenic (TTTAA)n|Simple_repeat|Simple_repeat -283380 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 171-120 chr7 18123112 18123244 + 2 NA intron (NM_001204144, intron 1 of 12) intron (NM_001204144, intron 1 of 12) 4131 NR_031635 100302140 NR_031635 ENSG00000221393 MIR1302-6 MIRN1302-6|hsa-mir-1302-6 microRNA 1302-6 ncRNA 521-6 chr1 69477345 69477835 + 2 NA Intergenic L1ME3A|LINE|L1 44335 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 329-304 chr2 198824623 198824937 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -449683 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 390-84 chr13 74262309 74262566 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 30993 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 765-3 chr10 9716500 9717242 + 2 NA Intergenic Intergenic -341851 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 437-75 chr14 53824817 53825120 + 2 NA Intergenic L1MEd|LINE|L1 123516 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 180-86 chr2 122246076 122246173 + 2 NA Intergenic L1PA7|LINE|L1 490473 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 149-104 chr9 25411917 25412037 + 2 NA Intergenic Intergenic 266881 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 250-179 chr18 52067272 52067469 + 2 NA Intergenic L1MD1|LINE|L1 -272827 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 258-24 chr1 195185269 195185451 + 2 NA Intergenic Intergenic 903355 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 196-50 chr11 111432750 111432874 + 2 NA Intergenic Intergenic -14626 NR_046085 100132078 Hs.672662 NR_046085 ENSG00000255428 LOC100132078 - uncharacterized LOC100132078 ncRNA 834-50 chr8 86192664 86193252 + 2 NA Intergenic Intergenic 37423 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 250-398 chr7 48989236 48989455 + 2 NA Intergenic Intergenic 64798 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 359-493 chr8 132588129 132588350 + 2 NA intron (NR_135913, intron 9 of 10) intron (NR_135913, intron 9 of 10) -26760 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 437-115 chr19 27934752 27935124 + 2 NA intron (NR_146733, intron 2 of 6) MIRb|SINE|MIR -140998 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 639-44 chr15 80529292 80529662 + 2 NA intron (NM_014862, intron 8 of 18) L1M6|LINE|L1 33467 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 421-76 chr14 28369971 28370287 + 2 NA Intergenic Intergenic 395190 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 669-47 chr19 53203936 53204356 + 2 NA Intergenic Intergenic -8802 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 155-103 chrX 67541169 67541267 + 2 NA Intergenic L1ME1|LINE|L1 -2803 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 285-76 chr11 135021758 135021973 + 2 NA Intergenic LTR53|LTR|ERVL 36513 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 244-93 chr14 62786299 62786452 + 2 NA intron (NM_139318, intron 9 of 10) intron (NM_139318, intron 9 of 10) 259083 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 314-474 chr5 106476555 106476770 + 2 NA Intergenic MER57F|LTR|ERV1 534352 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 177-99 chr22 38267114 38267274 + 2 NA intron (NM_001195072, intron 1 of 9) intron (NM_001195072, intron 1 of 9) 5470 NM_001195071 25829 Hs.182626 NM_012264 ENSG00000198792 TMEM184B C22orf5|FM08|HS5O6A|HSPC256 transmembrane protein 184B protein-coding 576-31 chr12 42156814 42157146 + 2 NA TTS (NM_001190977) TTS (NM_001190977) -12106 NM_173601 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 301-170 chr17 73947928 73948202 + 2 NA Intergenic L2a|LINE|L2 -119528 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 544-2 chr1 10111500 10111833 + 2 NA intron (NM_001105562, intron 7 of 27) intron (NM_001105562, intron 7 of 27) 78708 NM_001105562 10277 Hs.593974 NM_006048 ENSG00000130939 UBE4B E4|HDNB1|UBOX3|UFD2|UFD2A ubiquitination factor E4B protein-coding 343-425 chr5 62844394 62844696 + 2 NA Intergenic L1MDa|LINE|L1 265726 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 249-132 chr15 87265995 87266122 + 2 NA Intergenic Intergenic -277632 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 262-395 chr7 45490214 45490365 + 2 NA Intergenic L1PA10|LINE|L1 -83851 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 332-177 chr16 11485028 11485274 + 2 NA intron (NM_001370704, intron 15 of 66) intron (NM_001370704, intron 15 of 66) 19891 NR_110907 101927131 Hs.569654 NR_110907 ENSG00000262999 LOC101927131 - uncharacterized LOC101927131 ncRNA 300-168 chr18 77539044 77539274 + 2 NA Intergenic MIRc|SINE|MIR 289311 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 257-265 chr3 50893000 50893226 + 2 NA intron (NM_004947, intron 4 of 52) L1M3c|LINE|L1 218033 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 478-97 chr15 61106764 61107087 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 122377 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 315-139 chr14 79656858 79657113 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 377605 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 237-156 chr19 43913742 43913917 + 2 NA exon (NM_003425, exon 10 of 10) exon (NM_003425, exon 10 of 10) -12026 NR_038334 100505715 Hs.76561 NR_038334 ENSG00000267058 LOC100505715 - uncharacterized LOC100505715 ncRNA 400-338 chr8 79212097 79212422 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -119929 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 374-272 chr4 34228244 34228487 + 2 NA intron (NR_147184, intron 2 of 3) L1MA3|LINE|L1 41382 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 303-293 chr3 126425442 126425709 + 2 NA intron (NM_182628, intron 13 of 16) L1MC1|LINE|L1 30666 NM_182628 348807 Hs.591305 NM_182628 ENSG00000163885 CFAP100 CCDC37|MIA1 cilia and flagella associated protein 100 protein-coding 441-265 chr8 98275868 98276243 + 2 NA intron (NR_135747, intron 1 of 11) L1MC1|LINE|L1 18180 NM_024759 79815 Hs.309489 NM_024759 ENSG00000104361 NIPAL2 NPAL2 NIPA like domain containing 2 protein-coding 270-34 chr10 48670482 48670637 + 2 NA Intergenic Intergenic -14294 NR_045675 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 434-128 chr2 195169 195494 + 2 NA Intergenic Intergenic 61009 NM_001282687 26751 Hs.515951 NM_015677 ENSG00000035115 SH3YL1 RAY SH3 and SYLF domain containing 1 protein-coding 467-81 chr14 59386695 59387009 + 2 NA Intergenic L1MA3|LINE|L1 78528 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 437-220 chr5 42077682 42078091 + 2 NA Intergenic L1PA3|LINE|L1 97459 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 383-195 chr2 102366913 102367202 + 2 NA intron (NM_001371424, intron 2 of 8) intron (NM_001371424, intron 2 of 8) 10774 NM_003855 8809 Hs.469521 NM_003855 ENSG00000115604 IL18R1 CD218a|CDw218a|IL-1Rrp|IL18RA|IL1RRP interleukin 18 receptor 1 protein-coding 553-118 chr2 86306131 86306425 + 2 NA intron (NM_001164730, intron 1 of 6) intron (NM_001164730, intron 1 of 6) 31348 NM_022912 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 514-24 chr10 34174038 34174387 + 2 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -401532 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 310-461 chr6 147496782 147496971 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -11814 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 312-510 chr8 46513130 46513316 + 2 NA Intergenic ALR/Alpha|Satellite|centr 104420 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 308-520 chr8 131097037 131097202 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -56210 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 599-122 chr6 169282736 169283268 + 2 NA Intergenic Intergenic -28888 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 278-435 chr8 132723752 132723914 + 2 NA intron (NM_001145153, intron 5 of 8) MER11A|LTR|ERVK 36749 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 310-74 chr11 26960807 26961098 + 2 NA Intergenic Intergenic -33160 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 276-207 chr19 15947192 15947433 + 2 NA Intergenic Intergenic -1696 NM_001004465 126541 Hs.553579 NM_001004465 ENSG00000176231 OR10H4 OR19-28 olfactory receptor family 10 subfamily H member 4 protein-coding 331-390 chr4 104355761 104355961 + 2 NA Intergenic L1MA3|LINE|L1 -135104 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 383-312 chr5 42653320 42653657 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 87624 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 316-333 chr21 30680929 30681228 + 2 NA Intergenic Intergenic 37699 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 355-468 chr7 64882188 64882418 + 2 NA Intergenic CpG -20939 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 207-188 chr3 67851263 67851403 + 2 NA intron (NR_109992, intron 5 of 6) intron (NR_109992, intron 5 of 6) -140259 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 389-72 chr11 129859274 129859570 + 2 NA TTS (NM_001331212) TTS (NM_001331212) 33587 NM_006165 4798 Hs.530539 NM_006165 ENSG00000170322 NFRKB INO80G nuclear factor related to kappaB binding protein protein-coding 401-299 chr7 47087175 47087546 + 2 NA Intergenic Intergenic 377443 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 375-27 chr1 222083535 222083780 + 2 NA Intergenic HAL1M8|LINE|L1 -105137 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 354-371 chr5 45645831 45646123 + 2 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 50403 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 315-357 chr4 162046969 162047133 + 2 NA intron (NR_125888, intron 5 of 5) intron (NR_125888, intron 5 of 5) 24318 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 485-282 chr8 65342480 65342787 + 2 NA Intergenic L1M5|LINE|L1 -162293 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 549-212 chr8 114040618 114040923 + 2 NA Intergenic L1MA4A|LINE|L1 -603831 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 326-441 chr6 4037805 4038075 + 2 NA intron (NR_146785, intron 3 of 20) intron (NR_146785, intron 3 of 20) 16640 NR_146784 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 487-151 chr2 136620799 136621221 + 2 NA Intergenic L1PA15|LINE|L1 -144535 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 238-21 chr1 181999622 181999777 + 2 NA Intergenic Intergenic 62013 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 314-148 chr13 65358185 65358446 + 2 NA Intergenic L1MA8|LINE|L1 -507732 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 303-313 chr4 45026599 45026803 + 2 NA Intergenic Intergenic -300067 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 399-156 chr2 115039396 115039695 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -25028 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 308-109 chr12 62141881 62142179 + 2 NA intron (NM_178539, intron 1 of 4) MIRb|SINE|MIR 50809 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 238-286 chr5 17097751 17097923 + 2 NA Intergenic AluSz6|SINE|Alu 58155 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 243-332 chr4 97302465 97302681 + 2 NA Intergenic L1MA4|LINE|L1 -64353 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 314-394 chr3 149693668 149693859 + 2 NA intron (NM_001348362, intron 3 of 9) L1MA3|LINE|L1 9510 NM_001168278 25937 Hs.477921 NM_015472 ENSG00000018408 WWTR1 TAZ WW domain containing transcription regulator 1 protein-coding 321-41 chr1 239676845 239677079 + 2 NA intron (NM_001347716, intron 4 of 7) intron (NM_001347716, intron 4 of 7) 42157 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 312-188 chr17 57163092 57163353 + 2 NA Intergenic Intergenic 67733 NM_001370427 8165 Hs.463506 NM_003488 ENSG00000121057 AKAP1 AKAP|AKAP121|AKAP149|AKAP84|D-AKAP1|PPP1R43|PRKA1|SAKAP84|TDRD17 A-kinase anchoring protein 1 protein-coding 303-16 chr1 170715462 170715740 + 2 NA intron (NM_022716, intron 1 of 3) intron (NM_022716, intron 1 of 3) 51470 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 400-205 chr22 48007023 48007240 + 2 NA Intergenic L1MC3|LINE|L1 -267233 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 282-253 chr2 224598967 224599180 + 2 NA Intergenic Intergenic -13676 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 364-179 chr18 2331611 2331944 + 2 NA Intergenic Intergenic 239728 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 401-323 chr8 84397840 84398100 + 2 NA intron (NM_001354319, intron 2 of 8) intron (NM_001354319, intron 2 of 8) -17514 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 462-133 chr2 29670260 29670652 + 2 NA intron (NM_004304, intron 3 of 28) L1MA4|LINE|L1 -195079 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 363-241 chr2 197761501 197761719 + 2 NA intron (NM_001284361, intron 7 of 11) L1MA5A|LINE|L1 23709 NM_001284362 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 659-115 chr8 83430580 83431144 + 2 NA Intergenic MIRc|SINE|MIR 27104 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 403-110 chr15 25446594 25446955 + 2 NA Intergenic Intergenic -7718 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 282-63 chr11 11248643 11248884 + 2 NA Intergenic Intergenic 104487 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 380-116 chr14 36422394 36422618 + 2 NA Intergenic Intergenic 91029 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 341-28 chr1 115365277 115365482 + 2 NA intron (NR_157569, intron 1 of 1) intron (NR_157569, intron 1 of 1) -27143 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 321-606 chr9 108495900 108496143 + 2 NA Intergenic Intergenic 359965 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 411-143 chr2 50673139 50673492 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 22947 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 410-157 chr2 201512062 201512409 + 2 NA intron (NM_001168216, intron 11 of 12) L1MD1|LINE|L1 60495 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 470-48 chr12 38795244 38795678 + 2 NA intron (NM_153634, intron 6 of 19) L1MB2|LINE|L1 110130 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 342-49 chr1 239532504 239532799 + 2 NA intron (NM_001347716, intron 2 of 7) intron (NM_001347716, intron 2 of 7) -96422 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 311-67 chr10 103519421 103519612 + 2 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -2074 NR_120676 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 212-73 chr11 116327901 116328087 + 2 NA Intergenic Intergenic -311428 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 357-179 chr19 32422997 32423236 + 2 NA intron (NM_207325, intron 3 of 18) L1M7|LINE|L1 16991 NM_207325 147991 Hs.194392 NM_207325 ENSG00000178904 DPY19L3 - dpy-19 like C-mannosyltransferase 3 protein-coding 502-48 chr11 36331660 36332089 + 2 NA intron (NM_001160167, intron 1 of 8) MLT2B1|LTR|ERVL 35586 NM_001160167 79899 Hs.19987 NM_024841 ENSG00000135362 PRR5L PROTOR2 proline rich 5 like protein-coding 387-339 chr7 37067447 37067692 + 2 NA intron (NM_001206480, intron 15 of 21) intron (NM_001206480, intron 15 of 21) 69773 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 335-450 chr5 167065047 167065297 + 2 NA Intergenic Intergenic -8070 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 157-48 chr17 68716469 68716587 + 2 NA Intergenic Intergenic 88374 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 536-99 chr17_KI270729v1_random 137199 137699 + 2 NA NA Intergenic NA NA 347-248 chr2 172827871 172828143 + 2 NA intron (NM_001100397, intron 1 of 27) intron (NM_001100397, intron 1 of 27) 6420 NM_001100397 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 258-96 chr12 96091684 96091906 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -48275 NM_001256643 4048 Hs.524648 NM_000895 ENSG00000111144 LTA4H - leukotriene A4 hydrolase protein-coding 321-8 chr1 42902833 42903035 + 2 NA Intergenic Intergenic 45312 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 744-25 chr16 10488445 10488910 + 2 NA Intergenic Intergenic 39521 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 203-69 chr14 96657855 96657998 + 2 NA Intergenic L1M4a2|LINE|L1 -83265 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 247-327 chr5 61234753 61234966 + 2 NA Intergenic Intergenic 30070 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 194-131 chr3 138246753 138246922 + 2 NA TTS (NM_014154) TTS (NM_014154) 59306 NM_001282342 25852 Hs.744868 NM_014154 ENSG00000114098 ARMC8 GID5|HSPC056|S863-2|VID28 armadillo repeat containing 8 protein-coding 224-192 chr3 22918210 22918409 + 2 NA Intergenic Intergenic 284269 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 599-82 chr3 61201404 61201947 + 2 NA intron (NM_001320900, intron 1 of 9) intron (NM_001320900, intron 1 of 9) 49777 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 244-259 chr4 61714860 61715100 + 2 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 446785 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 360-310 chr3 104448671 104448871 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -917942 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 255-425 chr8 85588464 85588658 + 2 NA Intergenic MER50B|LTR|ERV1 67115 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 706-38 chr19 37824880 37825280 + 2 NA non-coding (NR_040015, exon 5 of 6) non-coding (NR_040015, exon 5 of 6) 7669 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 484-26 chr10 11818860 11819168 + 2 NA Intergenic L1ME4a|LINE|L1 -4342 NM_153256 254427 Hs.435775 NM_153256 ENSG00000148426 PROSER2 C10orf47 proline and serine rich 2 protein-coding 385-275 chr4 81055837 81056079 + 2 NA 3' UTR (NM_001201, exon 3 of 3) 3' UTR (NM_001201, exon 3 of 3) 25250 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 371-345 chr6 153887738 153888079 + 2 NA Intergenic MER4A1|LTR|ERV1 -122588 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 329-178 chr15 33615632 33615909 + 2 NA intron (NM_001243996, intron 19 of 102) intron (NM_001243996, intron 19 of 102) 304803 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 356-23 chr1 183336580 183336885 + 2 NA intron (NM_015039, intron 1 of 10) L1MD2|LINE|L1 -31858 NM_170706 23057 Hs.497123 NM_015039 ENSG00000157064 NMNAT2 C1orf15|PNAT2 nicotinamide nucleotide adenylyltransferase 2 protein-coding 118-54 chr7 80261502 80261579 + 2 NA Intergenic LTR89|LTR|ERVL? 112899 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 542-195 chr7 4656269 4656613 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -25854 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 195-173 chr4 122254433 122254573 + 2 NA intron (NM_015312, intron 36 of 83) intron (NM_015312, intron 36 of 83) 83900 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 724-100 chr8 104816216 104816738 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -227453 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 474-291 chr8 109843100 109843393 + 2 NA Intergenic Intergenic 132525 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 308-175 chr16 71512765 71512973 + 2 NA promoter-TSS (NR_135171) promoter-TSS (NR_135171) -942 NR_135171 105371335 Hs.564879 NR_135171 ENSG00000260520 LOC105371335 - uncharacterized LOC105371335 ncRNA 656-22 chr10 59146907 59147377 + 2 NA Intergenic L1MC5a|LINE|L1 29322 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 626-46 chr16 83254484 83254948 + 2 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -253630 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 239-319 chr5 85000584 85000732 + 2 NA Intergenic Intergenic -615778 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 340-465 chr5 140895174 140895377 + 2 NA intron (NM_018904, intron 1 of 3) intron (NM_018904, intron 1 of 3) 13006 NM_031865 56136 Hs.199343 NM_018904 ENSG00000239389 PCDHA13 CNR5|CNRN5|CNRS5|CRNR5|PCDH-ALPHA13 protocadherin alpha 13 protein-coding 243-152 chr16 62101334 62101513 + 2 NA Intergenic (TTCA)n|Simple_repeat|Simple_repeat -64985 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 297-233 chr2 145882775 145882945 + 2 NA Intergenic Intergenic -704197 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 157-5 chr1 58760603 58760710 + 2 NA Intergenic Intergenic 23391 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 388-36 chr1 232451954 232452235 + 2 NA intron (NM_020808, intron 8 of 20) intron (NM_020808, intron 8 of 20) 63514 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 318-539 chr8 71437199 71437471 + 2 NA intron (NM_001370336, intron 2 of 17) MIRb|SINE|MIR -75266 NM_001288575 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 349-189 chr16 7280567 7280851 + 2 NA intron (NM_018723, intron 4 of 15) MER20|DNA|hAT-Charlie -52136 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 360-375 chr5 108372561 108372767 + 2 NA intron (NM_001163315, intron 1 of 8) L1M4|LINE|L1 9434 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 401-151 chr2 21768147 21768381 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -57612 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 191-82 chr17 66251705 66251849 + 2 NA Intergenic MER101|LTR|ERV1 -22362 NM_000042 350 Hs.445358 NM_000042 ENSG00000091583 APOH B2G1|B2GP1|BG apolipoprotein H protein-coding 483-58 chr14 20326590 20326917 + 2 NA promoter-TSS (NR_003693) promoter-TSS (NR_003693) -214 NR_003693 100113391 NR_003693 SNORD126 MIR1201|MIRN1201 small nucleolar RNA, C/D box 126 snoRNA 298-328 chr4 75423651 75423851 + 2 NA Intergenic Intergenic 69675 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 494-71 chr14 78463937 78464306 + 2 NA intron (NM_004796, intron 1 of 16) AluSx1|SINE|Alu 60402 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 371-144 chr17 56295681 56295885 + 2 NA intron (NM_001370326, intron 3 of 20) MSTD|LTR|ERVL-MaLR 142308 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 349-477 chr7 68355112 68355304 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger 334955 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 824-12 chr14 62006569 62007277 + 2 NA intron (NM_001367661, intron 4 of 8) intron (NM_001367661, intron 4 of 8) 79228 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 248-114 chr14 59894422 59894612 + 2 NA Intergenic Intergenic -23741 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 237-153 chr19 34968212 34968395 + 2 NA Intergenic LTR1D1|LTR|ERV1 -4074 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 242-12 chr1 108484674 108484843 + 2 NA Intergenic HAL1|LINE|L1 34476 NM_001143987 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 259-243 chr3 25186479 25186685 + 2 NA intron (NM_001290216, intron 4 of 10) L1ME3F|LINE|L1 -154220 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 261-222 chr21 29225481 29225720 + 2 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) 32106 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 345-382 chr4 53730042 53730319 + 2 NA intron (NR_125918, intron 2 of 2) intron (NR_125918, intron 2 of 2) 34279 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 523-7 chr1 88636993 88637426 + 2 NA intron (NR_110682, intron 1 of 3) ERVL-B4-int|LTR|ERVL -46935 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 524-217 chr6 19374504 19374927 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -75106 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 313-111 chr12 75893891 75894155 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie 137753 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 266-289 chr4 66229372 66229559 + 2 NA Intergenic L1M5|LINE|L1 -47359 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 463-292 chr8 121745506 121745818 + 2 NA Intergenic Intergenic -104222 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 222-266 chr4 60703111 60703253 + 2 NA Intergenic Intergenic -219437 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 427-6 chr1 99279959 99280356 + 2 NA intron (NM_014839, intron 1 of 6) intron (NM_014839, intron 1 of 6) 15865 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 309-274 chr2 142739453 142739642 + 2 NA Intergenic L1ME1|LINE|L1 -138117 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 833-38 chr8 40790677 40791303 + 2 NA intron (NM_024645, intron 2 of 6) L1MC2|LINE|L1 106836 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 250-359 chr5 123572239 123572411 + 2 NA intron (NM_001044723, intron 3 of 12) intron (NM_001044723, intron 3 of 12) 26908 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 292-362 chr5 147775316 147775544 + 2 NA intron (NM_001270934, intron 1 of 20) intron (NM_001270934, intron 1 of 20) 7298 NM_014790 9832 Hs.740461 NM_014790 ENSG00000176049 JAKMIP2 JAMIP2|NECC1 janus kinase and microtubule interacting protein 2 protein-coding 514-33 chr10 83726995 83727356 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -50086 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 223-155 chr2 65869472 65869666 + 2 NA Intergenic Intergenic -436970 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 332-346 chr3 124219270 124219553 + 2 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 86482 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 278-236 chr2 173450403 173450587 + 2 NA Intergenic Intergenic 95623 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 359-117 chr12 43188817 43189145 + 2 NA Intergenic L2|LINE|L2 33666 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 346-181 chr16 76448975 76449257 + 2 NA intron (NM_001322190, intron 6 of 22) intron (NM_001322190, intron 6 of 22) 139264 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 153-29 chr13 109657315 109657452 + 2 NA Intergenic Intergenic -70891 NR_103846 101409253 Hs.578072 NR_103846 ENSG00000234854 LINC00676 - long intergenic non-protein coding RNA 676 ncRNA 308-145 chr14 62344259 62344447 + 2 NA Intergenic AluSx3|SINE|Alu -204380 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 251-409 chr8 139092109 139092261 + 2 NA Intergenic Intergenic -178144 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 402-34 chr10 75685277 75685514 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -27060 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 168-83 chr4 165976794 165976933 + 2 NA intron (NM_001204760, intron 1 of 9) MER30|DNA|hAT-Charlie 103626 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 531-35 chr11 66879950 66880468 + 2 NA intron (NM_001040716, intron 3 of 22) intron (NM_001040716, intron 3 of 22) 23145 NM_001363524 78999 Hs.209979 NM_024036 ENSG00000173621 LRFN4 FIGLER6|SALM3|SALM3. leucine rich repeat and fibronectin type III domain containing 4 protein-coding 280-407 chr8 80768083 80768276 + 2 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 106289 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 282-319 chr3 191675605 191675816 + 2 NA Intergenic L1ME1|LINE|L1 214547 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 313-398 chr4 98518772 98518956 + 2 NA intron (NM_005723, intron 1 of 7) MER5A|DNA|hAT-Charlie 139747 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 310-114 chr13 59276467 59276748 + 2 NA Intergenic Intergenic -736111 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 508-192 chr5 112151017 112151375 + 2 NA intron (NM_001347887, intron 22 of 23) L1MEd|LINE|L1 -9330 NR_015370 114915 Hs.12082 NM_053000 EPB41L4A-AS1 C5orf26|NCRNA00219|TIGA1 EPB41L4A antisense RNA 1 ncRNA 322-442 chr5 145955645 145955901 + 2 NA intron (NM_152550, intron 2 of 9) intron (NM_152550, intron 2 of 9) 19195 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 125-55 chr5 82049587 82049660 + 2 NA intron (NM_031482, intron 2 of 7) intron (NM_031482, intron 2 of 7) 77600 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 572-165 chr7 134039932 134040368 + 2 NA intron (NM_021807, intron 17 of 17) intron (NM_021807, intron 17 of 17) -87190 NM_001365700 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 316-31 chr1 175710141 175710384 + 2 NA intron (NM_003285, intron 1 of 22) L2b|LINE|L2 33333 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 691-47 chr22 36170469 36171055 + 2 NA Intergenic AluSx1|SINE|Alu -4585 NM_145641 80833 Hs.474737 NM_014349 ENSG00000128284 APOL3 APOLIII|CG121|CG12_1|apoL-III apolipoprotein L3 protein-coding 242-300 chr5 52057510 52057685 + 2 NA Intergenic L1PA15|LINE|L1 49566 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 554-85 chr16 10415116 10415519 + 2 NA intron (NM_024997, intron 1 of 11) L1MA2|LINE|L1 29256 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 263-219 chr2 160522474 160522684 + 2 NA Intergenic L1MEd|LINE|L1 -28772 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 370-445 chr8 113525700 113526042 + 2 NA Intergenic MER50-int|LTR|ERV1 -88932 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 324-164 chr14 71398229 71398474 + 2 NA promoter-TSS (NR_001276) promoter-TSS (NR_001276) 14 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 460-179 chr20 60701980 60702337 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 137596 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 566-137 chr3 193149764 193150248 + 2 NA Intergenic L1PA6|LINE|L1 -91216 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 216-140 chr18 6341694 6341840 + 2 NA intron (NM_001365765, intron 1 of 18) L1MA10|LINE|L1 17263 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 316-613 chrY 56828875 56829121 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat -125257 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 208-45 chr11 100377479 100377637 + 2 NA Intergenic LTR78|LTR|ERV1 -309730 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 268-339 chr6 56020907 56021049 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 70684 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 451-241 chr8 124765283 124765649 + 2 NA Intergenic Intergenic -36959 NM_014751 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 411-168 chr21 23962784 23963008 + 2 NA Intergenic Intergenic 358481 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 188 chr1 14411743 14411890 + 2 NA intron (NR_149058, intron 1 of 4) L1ME3Cz|LINE|L1 8157 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 286-239 chr2 228771111 228771340 + 2 NA Intergenic Intergenic -159830 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 327-34 chr1 248344603 248344839 + 2 NA Intergenic Intergenic -4054 NM_001001918 127066 Hs.553583 NM_001001918 ENSG00000177174 OR14C36 OR5BF1 olfactory receptor family 14 subfamily C member 36 protein-coding 207-236 chr5 25948559 25948731 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 757692 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 399-137 chr2 30289769 30290026 + 2 NA Intergenic Intergenic -56749 NR_122048 285043 Hs.429119 NR_122048 LINC01936 - long intergenic non-protein coding RNA 1936 ncRNA 404-254 chr5 28820576 28820978 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -106093 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 260-417 chr7 110207341 110207535 + 2 NA Intergenic Intergenic -247225 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 187-93 chr20 8692342 8692478 + 2 NA intron (NM_182734, intron 10 of 32) MIRb|SINE|MIR -138775 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 279-303 chr4 173092081 173092275 + 2 NA Intergenic Intergenic -76633 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 362-68 chr10 69676063 69676257 + 2 NA Intergenic LTR33|LTR|ERVL 45913 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 283-84 chr11 82016060 82016267 + 2 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -125327 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 167-112 chr8 105544652 105544781 + 2 NA intron (NM_001362837, intron 3 of 7) intron (NM_001362837, intron 3 of 7) 225173 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 470-63 chr13 82845147 82845422 + 2 NA Intergenic L1ME1|LINE|L1 1037109 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 447-22 chr10 48860638 48860948 + 2 NA intron (NM_020945, intron 39 of 61) L1MDa|LINE|L1 53442 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 229-190 chr2 112119605 112119766 + 2 NA TTS (NM_032824) TTS (NM_032824) -18700 NM_153214 129804 Hs.437696 NM_153214 ENSG00000144152 FBLN7 TM14 fibulin 7 protein-coding 327-194 chr17 34691460 34691712 + 2 NA Intergenic L1ME2z|LINE|L1 110837 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 282-313 chr3 165843311 165843562 + 2 NA Intergenic Intergenic -6013 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 395-125 chr16 68463218 68463436 + 2 NA Intergenic Intergenic -14819 NM_018667 55512 Hs.368421 NM_018667 ENSG00000103056 SMPD3 NSMASE2 sphingomyelin phosphodiesterase 3 protein-coding 385-240 chr3 41651468 41651701 + 2 NA intron (NR_136342, intron 28 of 34) intron (NR_136342, intron 28 of 34) 310519 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 322-242 chr2 53552550 53552746 + 2 NA Intergenic Intergenic -215135 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 479-9 chr1 118720231 118720595 + 2 NA Intergenic L1MB1|LINE|L1 267930 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 227-243 chr4 31723913 31724048 + 2 NA Intergenic Intergenic 217436 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 321-191 chr15 47359346 47359574 + 2 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 175371 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 543-31 chr10 42376913 42377299 + 2 NA Intergenic AluSp|SINE|Alu -9061 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 643 chr1 34138372 34138882 + 2 NA intron (NM_052896, intron 1 of 69) L1M5|LINE|L1 26647 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 282-127 chr14 57429890 57430061 + 2 NA Intergenic Intergenic 39389 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 203-64 chr14 65668524 65668679 + 2 NA intron (NM_004480, intron 5 of 9) L1PA15|LINE|L1 197499 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 258-192 chr2 98095652 98095879 + 2 NA intron (NR_144297, intron 2 of 18) L1MA8|LINE|L1 8598 NM_144992 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 211-123 chr19 12356833 12356994 + 2 NA intron (NM_030824, intron 3 of 5) intron (NM_030824, intron 3 of 5) 8770 NM_001363774 79973 Hs.253193 NM_030824 ENSG00000198342 ZNF442 - zinc finger protein 442 protein-coding 843-39 chr8 29155280 29156004 + 2 NA intron (NM_015254, intron 14 of 39) intron (NM_015254, intron 14 of 39) 107428 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 598-29 chr11 79779967 79780368 + 2 NA Intergenic Intergenic -339137 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 393-61 chr11 102500367 102500663 + 2 NA Intergenic Intergenic 30232 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 238-169 chr2 54421318 54421540 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie -34898 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 437-86 chr15 72226838 72227224 + 2 NA intron (NM_001206798, intron 1 of 10) intron (NM_001206798, intron 1 of 10) 2880 NM_001206799 5315 Hs.534770 NM_002654 ENSG00000067225 PKM CTHBP|HEL-S-30|OIP3|PK3|PKM2|TCB|THBP1 pyruvate kinase M1/2 protein-coding 167-50 chr19 46142172 46142287 + 2 NA Intergenic MERX|DNA|TcMar-Tigger -5553 NM_001002915 147920 Hs.99376 NM_001002915 ENSG00000204866 IGFL2 UNQ645|VPRI645 IGF like family member 2 protein-coding 318-328 chr21 24972140 24972313 + 2 NA intron (NR_046198, intron 2 of 3) L1MB8|LINE|L1 131676 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 342-527 chr8 119105043 119105324 + 2 NA intron (NM_001324095, intron 7 of 7) L2c|LINE|L2 -36401 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 202-250 chr8 53028150 53028340 + 2 NA Intergenic Intergenic 88337 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 261-389 chr8 126712118 126712316 + 2 NA Intergenic MIRc|SINE|MIR -153739 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 476-12 chr1 182696986 182697342 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -15698 NR_146548 105371644 Hs.496952 NR_146548 ENSG00000227181 LINC01688 - long intergenic non-protein coding RNA 1688 ncRNA 366-36 chr1 241127586 241127948 + 2 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) -4505 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 333-523 chr7 4411137 4411373 + 2 NA Intergenic MER3|DNA|hAT-Charlie -271040 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 191-188 chr6 120643888 120644072 + 2 NA Intergenic Intergenic 628801 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 301-292 chr3 164591071 164591224 + 2 NA Intergenic L1PREC2|LINE|L1 240333 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 248-368 chr7 21096843 21097055 + 2 NA Intergenic Intergenic 261518 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 344-345 chr4 28184383 28184677 + 2 NA Intergenic L1MA4|LINE|L1 -635052 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 379-163 chr2 96916142 96916425 + 2 NA intron (NM_001122646, intron 12 of 16) L1ME3Cz|LINE|L1 -2823 NR_110209 101927053 Hs.677537 NR_110209 LOC101927053 - uncharacterized LOC101927053 ncRNA 269-134 chr15 61375626 61375817 + 2 NA Intergenic L1MB4|LINE|L1 -146419 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 544-210 chr7 52037342 52037806 + 2 NA Intergenic L1M5|LINE|L1 -644318 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 599-142 chr9 83175076 83175573 + 2 NA Intergenic L1MB8|LINE|L1 91944 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 311-9 chr1 58819812 58820102 + 2 NA intron (NR_108106, intron 1 of 1) MIRb|SINE|MIR 34806 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 376-42 chr10 39235287 39235531 + 2 NA Intergenic ALR/Alpha|Satellite|centr 538813 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 807-43 chr5 102343713 102344237 + 2 NA Intergenic PRIMA41-int|LTR|ERV1 -47691 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 366-62 chr10 108221529 108221754 + 2 NA Intergenic Intergenic -152348 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 295-9 chr1 60478347 60478601 + 2 NA Intergenic L1MEc|LINE|L1 144211 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 272-213 chr2 133798430 133798617 + 2 NA Intergenic L1MC3|LINE|L1 -230060 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 382-210 chr2 116994405 116994686 + 2 NA Intergenic MER21B|LTR|ERVL -820146 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 322-164 chr14 88128914 88129231 + 2 NA Intergenic Intergenic -102760 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 244-297 chr5 37980179 37980363 + 2 NA Intergenic AluJb|SINE|Alu 31780 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 272-380 chr6 44771700 44771922 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger -219930 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 282-259 chr20 7690437 7690591 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 249944 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 242-331 chr5 169206740 169206956 + 2 NA intron (NM_003062, intron 3 of 35) intron (NM_003062, intron 3 of 35) 56846 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 514-292 chr8 136638329 136638723 + 2 NA intron (NR_147196, intron 2 of 5) MLT1D|LTR|ERVL-MaLR 107728 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 374-415 chr9 81855302 81855538 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -58017 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 257-135 chr16 55996338 55996579 + 2 NA Intergenic L2|LINE|L2 -40427 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 233-110 chr15 70937790 70937976 + 2 NA intron (NM_017691, intron 8 of 15) intron (NM_017691, intron 8 of 15) 45440 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 353-343 chr3 145607596 145607862 + 2 NA Intergenic L1PA15|LINE|L1 461456 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 230-98 chr13 46351422 46351630 + 2 NA intron (NM_025113, intron 10 of 14) L1MC5a|LINE|L1 35726 NM_001286764 80183 Hs.98117 NM_025113 ENSG00000102445 RUBCNL C13orf18|KIAA0226L|PACER rubicon like autophagy enhancer protein-coding 311-34 chr1 208227973 208228190 + 2 NA intron (NM_025179, intron 1 of 31) intron (NM_025179, intron 1 of 31) 16303 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 406-235 chr5 108180972 108181218 + 2 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 201003 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 477-174 chr20 587911 588222 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 22200 NM_004609 6939 Hs.437 NM_004609 ENSG00000125878 TCF15 EC2|PARAXIS|bHLHa40 transcription factor 15 protein-coding 120-28 chr2 29563182 29563297 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -87862 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 259-401 chr8 91773464 91773649 + 2 NA Intergenic L2|LINE|L2 244124 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 360-349 chr5 15708640 15708926 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -93781 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 539-74 chr14 84656178 84656567 + 2 NA Intergenic Charlie20a|DNA|hAT-Charlie -615560 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 369-198 chr2 78389495 78389775 + 2 NA Intergenic L1MA4|LINE|L1 -98904 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 209-18 chr1 175332411 175332567 + 2 NA intron (NM_003285, intron 20 of 22) intron (NM_003285, intron 20 of 22) -139502 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 419-296 chr8 117265423 117265738 + 2 NA Intergenic Intergenic 130585 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 308-354 chr4 108373619 108373817 + 2 NA Intergenic Intergenic -183515 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 200-178 chr3 106479048 106479199 + 2 NA Intergenic L1MA9|LINE|L1 -609722 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 194-187 chr6 112243573 112243693 + 2 NA intron (NR_121193, intron 2 of 2) intron (NR_121193, intron 2 of 2) 7037 NR_121193 101927640 Hs.510007 NR_121193 LOC101927640 - uncharacterized LOC101927640 ncRNA 487-55 chr11 38610603 38610949 + 2 NA Intergenic L1MD3|LINE|L1 35580 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 288-431 chr8 27019882 27020128 + 2 NA Intergenic Intergenic 28958 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 389-3 chr1 41172145 41172503 + 2 NA intron (NM_001172218, intron 2 of 15) L1MA5|LINE|L1 -9307 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 333-502 chr6 55479597 55479814 + 2 NA intron (NR_109869, intron 3 of 4) intron (NR_109869, intron 3 of 4) 99509 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 514-272 chr7 54506122 54506582 + 2 NA Intergenic L1M4a2|LINE|L1 -35973 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 176-75 chr22 24144106 24144231 + 2 NA intron (NM_012295, intron 29 of 36) MIRb|SINE|MIR -37319 NM_019601 56241 Hs.131819 NM_019601 ENSG00000099994 SUSD2 BK65A6.2|W5C5 sushi domain containing 2 protein-coding 212-131 chr18 78217009 78217184 + 2 NA Intergenic Intergenic -223369 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 260-271 chr3 82150820 82151039 + 2 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 164787 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 387-303 chr6 10966314 10966667 + 2 NA intron (NM_001040274, intron 29 of 29) L1M5|LINE|L1 -12401 NR_125851 101928191 Hs.638939 NR_125851 LOC101928191 - uncharacterized LOC101928191 ncRNA 256-167 chr17 66109181 66109391 + 2 NA intron (NM_001353129, intron 6 of 26) L1MA3|LINE|L1 82606 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 283-113 chr12 133207675 133207931 + 2 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 26308 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 183-26 chr11 91774729 91774895 + 2 NA Intergenic L1MA10|LINE|L1 -450222 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 407-301 chr7 68602234 68602495 + 2 NA Intergenic AluJr|SINE|Alu 582111 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 128-69 chr7 39924051 39924157 + 2 NA Intergenic Intergenic 25315 NR_158201 112267983 Hs.587424 NR_158201 LOC112267983 - uncharacterized LOC112267983 ncRNA 292-57 chr10 92697252 92697538 + 2 NA Intergenic Intergenic 7440 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 191-215 chr8 103888574 103888738 + 2 NA intron (NM_001282881, intron 2 of 20) intron (NM_001282881, intron 2 of 20) 69436 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 305-428 chr5 36646163 36646453 + 2 NA intron (NM_004172, intron 3 of 9) intron (NM_004172, intron 3 of 9) 39702 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 262-291 chr3 147786856 147787046 + 2 NA Intergenic L1MA5|LINE|L1 -291208 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 418-131 chr2 162476823 162477168 + 2 NA intron (NM_033272, intron 6 of 15) intron (NM_033272, intron 6 of 15) 132627 NM_001330270 25801 Hs.377894 NM_012198 ENSG00000115271 GCA GCL grancalcin protein-coding 150-63 chr22 27431300 27431408 + 2 NA Intergenic Intergenic 120703 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 387-344 chr7 53627304 53627556 + 2 NA Intergenic Intergenic 184501 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 286-464 chr8 120133908 120134136 + 2 NA intron (NM_021110, intron 1 of 47) L1M5|LINE|L1 8920 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 531-194 chr5 28373356 28373705 + 2 NA Intergenic Intergenic -85865 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 326-41 chr1 188713327 188713530 + 2 NA Intergenic Intergenic 1269800 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 270-409 chr8 124006400 124006611 + 2 NA intron (NR_040044, intron 4 of 5) intron (NR_040044, intron 4 of 5) 34277 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 245-24 chr1 210441400 210441606 + 2 NA intron (NM_001122834, intron 7 of 11) intron (NM_001122834, intron 7 of 11) 112137 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 367-13 chr1 73655010 73655305 + 2 NA Intergenic MIRb|SINE|MIR -19522 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 378-356 chr5 160810484 160810765 + 2 NA intron (NM_001366652, intron 1 of 24) L1MEf|LINE|L1 41587 NM_025153 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 235-344 chr7 145067200 145067420 + 2 NA Intergenic (TATATAA)n|Simple_repeat|Simple_repeat -231257 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 276-335 chr4 63124549 63124702 + 2 NA Intergenic MER76|LTR|ERVL -962860 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 342-520 chr8 107008112 107008411 + 2 NA Intergenic L1PB1|LINE|L1 -238017 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 592-58 chr15 86470713 86471289 + 2 NA intron (NM_152336, intron 18 of 24) L1MA9|LINE|L1 -154033 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 168-37 chr15 57532065 57532218 + 2 NA intron (NM_032866, intron 14 of 18) intron (NM_032866, intron 14 of 18) -59763 NM_001018100 100820829 Hs.437256 NM_152451 ENSG00000263155 MYZAP GCOM1|Gup|MYOZAP myocardial zonula adherens protein protein-coding 306-514 chr8 105003175 105003410 + 2 NA Intergenic Intergenic -315146 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 672-90 chr5 126217448 126218006 + 2 NA Intergenic L1MC5a|LINE|L1 38150 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 319-66 chr10 71168308 71168496 + 2 NA Intergenic Intergenic -44168 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 284-53 chr10 85810563 85810767 + 2 NA intron (NM_017551, intron 8 of 15) L1M2c|LINE|L1 232934 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 276-422 chr7 9385071 9385327 + 2 NA Intergenic L1M2|LINE|L1 -249071 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 374-289 chr4 184050185 184050552 + 2 NA Intergenic Intergenic 145061 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 338-110 chr11 105688172 105688389 + 2 NA intron (NR_046356, intron 2 of 16) AluY|SINE|Alu 77574 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 322-65 chr10 75355270 75355560 + 2 NA intron (NR_038226, intron 2 of 3) intron (NR_038226, intron 2 of 3) -46113 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 432-149 chr2 213529967 213530353 + 2 NA intron (NR_047660, intron 9 of 14) Tigger3b|DNA|TcMar-Tigger -227907 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 369-140 chr15 94571888 94572105 + 2 NA Intergenic Intergenic 216066 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 672-107 chr7 106246637 106247197 + 2 NA Intergenic L1P1|LINE|L1 38066 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 338-234 chr19 33072069 33072353 + 2 NA Intergenic MIRb|SINE|MIR -7323 NM_033103 85415 Hs.466435 NM_033103 ENSG00000131941 RHPN2 P76RBE|RHOBP rhophilin Rho GTPase binding protein 2 protein-coding 310-226 chr2 23086112 23086347 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -298950 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 341-218 chr19 31952628 31952904 + 2 NA Intergenic Intergenic -73096 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 361-218 chr2 78939428 78939629 + 2 NA Intergenic Intergenic -86174 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 361-133 chr14 43413590 43413927 + 2 NA Intergenic L1M4|LINE|L1 1093525 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 314-568 chr8 82459208 82459439 + 2 NA Intergenic Intergenic -452781 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 533-9 chr1 218617737 218618263 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 107905 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 267-85 chr12 41899683 41899930 + 2 NA Intergenic L1M5|LINE|L1 135617 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 372-330 chr3 82447310 82447549 + 2 NA intron (NR_147146, intron 4 of 8) LTR108d_Mam|LTR|ERVL 461287 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 115-46 chr7 66256177 66256262 + 2 NA intron (NM_003596, intron 2 of 5) L1ME3D|LINE|L1 50885 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 268-100 chr13 24656923 24657154 + 2 NA Intergenic L1M5|LINE|L1 -23370 NM_001676 479 Hs.147111 NM_001676 ENSG00000075673 ATP12A ATP1AL1|HK ATPase H+/K+ transporting non-gastric alpha2 subunit protein-coding 361-72 chr11 33615941 33616123 + 2 NA intron (NM_012194, intron 15 of 20) intron (NM_012194, intron 15 of 20) 84708 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 186-102 chr22 38131307 38131446 + 2 NA intron (NM_001199562, intron 7 of 15) L1MA3|LINE|L1 -20692 NM_025045 80115 Hs.474822 NM_025045 ENSG00000128298 BAIAP2L2 - BAI1 associated protein 2 like 2 protein-coding 330-464 chr6 118232737 118232959 + 2 NA intron (NM_001029858, intron 2 of 7) intron (NM_001029858, intron 2 of 7) 146945 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 351-215 chr2 59054412 59054745 + 2 NA intron (NR_033873, intron 12 of 13) intron (NR_033873, intron 12 of 13) -163130 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 358-232 chr2 124425063 124425387 + 2 NA intron (NM_130773, intron 4 of 23) intron (NM_130773, intron 4 of 23) 399938 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 390-334 chr6 126037979 126038253 + 2 NA intron (NM_001031712, intron 12 of 12) intron (NM_001031712, intron 12 of 12) 51576 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 158-40 chr18 6692514 6692625 + 2 NA Intergenic Intergenic -37147 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 192-118 chr20 20809225 20809410 + 2 NA Intergenic Intergenic -96673 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 439-17 chr1 191334661 191334886 + 2 NA Intergenic Intergenic -106275 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 369-356 chr6 61715591 61715883 + 2 NA intron (NR_146872, intron 7 of 9) intron (NR_146872, intron 7 of 9) 141607 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 347-79 chr11 95766059 95766393 + 2 NA Intergenic Intergenic 23556 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 378-81 chr11 54831061 54831333 + 2 NA Intergenic ALR/Alpha|Satellite|centr 124365 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 366-279 chr3 89923388 89923673 + 2 NA Intergenic Intergenic 815909 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 249-210 chr2 120165048 120165289 + 2 NA intron (NM_001330310, intron 22 of 24) intron (NM_001330310, intron 22 of 24) 58232 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 301-153 chr16 82098145 82098412 + 2 NA exon (NM_002153, exon 5 of 5) exon (NM_002153, exon 5 of 5) 63025 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 369-287 chr4 38960730 38960974 + 2 NA Intergenic BC200|scRNA|scRNA 71557 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 274-103 chr12 118971372 118971623 + 2 NA Intergenic Intergenic -10044 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 292-283 chr3 48315339 48315506 + 2 NA TTS (NR_031749) TTS (NR_031749) 1037 NR_031749 100313840 NR_031749 ENSG00000252466 MIR2115 - microRNA 2115 ncRNA 516-148 chr20 5438550 5438950 + 2 NA intron (NR_038240, intron 1 of 4) L1PA10|LINE|L1 6998 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 318-58 chr10 36289173 36289455 + 2 NA Intergenic L1MA3|LINE|L1 511012 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 330-406 chr5 14773439 14773719 + 2 NA intron (NM_054027, intron 1 of 11) intron (NM_054027, intron 1 of 11) 52433 NR_039780 100616271 NR_039780 ENSG00000264792 MIR4637 - microRNA 4637 ncRNA 361-203 chr2 13094893 13095114 + 2 NA Intergenic Intergenic -87990 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 359-14 chr1 80588494 80588831 + 2 NA intron (NR_125940, intron 2 of 3) AluSq2|SINE|Alu -52625 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 510-25 chr1 240937698 240937996 + 2 NA intron (NM_001350116, intron 4 of 16) intron (NM_001350116, intron 4 of 16) -194425 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 507-91 chr14_GL000225v1_random 127107 127463 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 246-32 chr10 23657081 23657302 + 2 NA Intergenic Intergenic -37536 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 200-70 chr14 40300930 40301093 + 2 NA Intergenic L1M4a2|LINE|L1 -653700 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 303-306 chr4 19068640 19068878 + 2 NA Intergenic Intergenic -1046884 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 916-31 chr5 179094977 179095559 + 2 NA Intergenic AluSz|SINE|Alu 34895 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 208-124 chr2 110911211 110911374 + 2 NA intron (NM_001371254, intron 11 of 18) L1MB7|LINE|L1 178719 NM_001371254 337-19 chr1 112083938 112084130 + 2 NA Intergenic Intergenic 93498 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 254-353 chr6 94706643 94706835 + 2 NA Intergenic Intergenic 870712 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 191-159 chr4 175990954 175991059 + 2 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) 11685 NR_048571 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 349-175 chr15 24836673 24836989 + 2 NA intron (NM_001349459, intron 2 of 11) MER21A|LTR|ERVL 13223 NM_022807 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 340-312 chr20 20178565 20178795 + 2 NA intron (NM_015585, intron 13 of 26) intron (NM_015585, intron 13 of 26) 122034 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 198-20 chr10 30251862 30252030 + 2 NA Intergenic L1ME1|LINE|L1 40094 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 558-66 chr15 97505328 97505754 + 2 NA intron (NR_120324, intron 2 of 4) L2a|LINE|L2 16270 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 544-190 chr5 160584825 160585352 + 2 NA intron (NM_001366652, intron 23 of 24) L1ME3C|LINE|L1 99736 NR_029701 406938 NR_029701 ENSG00000283733 MIR146A MIRN146|MIRN146A|miR-146a|miRNA146A microRNA 146a ncRNA 338-249 chr2 33855845 33856068 + 2 NA intron (NR_126403, intron 2 of 5) LTR26C|LTR|ERV1 -127739 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 306-62 chr10 85250710 85250887 + 2 NA Intergenic Intergenic -51860 NR_120667 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 499-3 chr1 41214366 41214730 + 2 NA intron (NM_001172218, intron 1 of 15) intron (NM_001172218, intron 1 of 15) 27758 NM_012236 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 325-493 chr7 8834867 8835139 + 2 NA Intergenic Intergenic 401394 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 540-157 chr4 66215979 66216419 + 2 NA Intergenic Intergenic -60625 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 830-59 chr9 117950498 117950987 + 2 NA Intergenic Intergenic 246339 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 380-414 chr8 138452759 138453001 + 2 NA intron (NM_001362965, intron 1 of 19) MLT1F|LTR|ERVL-MaLR 44381 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 218-158 chr2 83027625 83027808 + 2 NA Intergenic Intergenic 170913 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 698-56 chr3 38899689 38900192 + 2 NA exon (NM_001349253, exon 17 of 30) exon (NM_001349253, exon 17 of 30) 50621 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 283-168 chr16 73916245 73916465 + 2 NA Intergenic Intergenic 299166 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 225-135 chr18 58198692 58198890 + 2 NA intron (NM_001144970, intron 1 of 28) intron (NM_001144970, intron 1 of 28) 3386 NM_001144970 23327 Hs.185677 NM_015277 ENSG00000049759 NEDD4L NEDD4-2|NEDD4.2|PVNH7|RSP5|hNEDD4-2 NEDD4 like E3 ubiquitin protein ligase protein-coding 505-317 chr8 130933974 130934350 + 2 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 106747 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 272-354 chr5 106965853 106966067 + 2 NA intron (NR_104671, intron 2 of 3) L2a|LINE|L2 45054 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 347-529 chr8 129562371 129562614 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 12526 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 279-363 chr6 63003716 63003914 + 2 NA Intergenic Intergenic 316162 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 933-34 chr5 131867089 131867755 + 2 NA intron (NM_001303622, intron 9 of 12) L1MC1|LINE|L1 -70405 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 284-410 chr8 94400214 94400362 + 2 NA exon (NM_001205263, exon 5 of 13) exon (NM_001205263, exon 5 of 13) 36656 NM_001256141 100861412 Hs.30561 NM_001256141 ENSG00000265817 FSBP - fibrinogen silencer binding protein protein-coding 299-17 chr1 107353343 107353562 + 2 NA intron (NM_001113226, intron 2 of 6) MSTA-int|LTR|ERVL-MaLR 205383 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 207-22 chr1 220602567 220602732 + 2 NA intron (NM_018650, intron 5 of 17) intron (NM_018650, intron 5 of 17) 74466 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 537-5 chr1 65733378 65733751 + 2 NA Intergenic L2a|LINE|L2 -58946 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 715-86 chr8 79438462 79438999 + 2 NA Intergenic Intergenic 106542 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 221-326 chrX 113016192 113016396 + 2 NA Intergenic L1ME4a|LINE|L1 -26433 NR_110399 101928437 Hs.640112 NR_110399 LOC101928437 - uncharacterized LOC101928437 ncRNA 271-140 chr14 76115461 76115654 + 2 NA Intergenic L1MB2|LINE|L1 -36328 NM_001322032 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 257-12 chr1 98009339 98009503 + 2 NA intron (NR_046105, intron 3 of 4) intron (NR_046105, intron 3 of 4) 35930 NR_039604 100616452 NR_039604 ENSG00000284247 MIR2682 mir-2682 microRNA 2682 ncRNA 154-110 chr9 84427197 84427318 + 2 NA Intergenic Intergenic -58530 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 290-368 chr5 129437165 129437368 + 2 NA Intergenic Intergenic -23032 NM_133638 171019 Hs.23751 NM_133638 ENSG00000145808 ADAMTS19 - ADAM metallopeptidase with thrombospondin type 1 motif 19 protein-coding 264-452 chrX 82437431 82437642 + 2 NA Intergenic L1PA15|LINE|L1 -1070754 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 388-101 chr14 27935996 27936234 + 2 NA Intergenic Intergenic -262894 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 395-332 chr8 69004709 69004954 + 2 NA intron (NR_039986, intron 2 of 4) intron (NR_039986, intron 2 of 4) 99359 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 624 chr1 72468050 72468446 + 2 NA Intergenic L1MEh|LINE|L1 -185709 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 213-286 chr8 113243480 113243627 + 2 NA intron (NM_001363185, intron 3 of 66) L1MB8|LINE|L1 133599 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 782-77 chr9 130738379 130738839 + 2 NA intron (NM_007313, intron 1 of 10) MER6A|DNA|TcMar-Tigger 24728 NM_007313 25 Hs.431048 NM_005157 ENSG00000097007 ABL1 ABL|CHDSKM|JTK7|bcr/abl|c-ABL|c-ABL1|p150|v-abl ABL proto-oncogene 1, non-receptor tyrosine kinase protein-coding 355-250 chr2 120726130 120726398 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -9604 NM_001371271 603-16 chr10 83589875 83590383 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR 86960 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 631-19 chr10 66601692 66602143 + 2 NA intron (NM_001127384, intron 10 of 17) intron (NM_001127384, intron 10 of 17) -324119 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 405-68 chr12 83251523 83251810 + 2 NA Intergenic Intergenic 564511 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 234-294 chr4 180997915 180998120 + 2 NA Intergenic Intergenic 161132 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 384-367 chr8 77079560 77079938 + 2 NA Intergenic Intergenic -78705 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 359-276 chr20 9132723 9133016 + 2 NA intron (NM_001172646, intron 1 of 37) MER20|DNA|hAT-Charlie 63815 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 272-170 chr19 58236629 58236775 + 2 NA intron (NM_001320791, intron 3 of 6) intron (NM_001320791, intron 3 of 6) 7788 NM_001320787 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 400-161 chr2 54193643 54193926 + 2 NA intron (NM_138448, intron 3 of 3) intron (NM_138448, intron 3 of 3) 62445 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 745-64 chr6 61515143 61515761 + 2 NA Intergenic ALR/Alpha|Satellite|centr -58678 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 661-40 chr19 37807167 37807555 + 2 NA Intergenic Intergenic -10050 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 198-67 chr14 72710354 72710521 + 2 NA intron (NM_001280544, intron 6 of 9) intron (NM_001280544, intron 6 of 9) 182212 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 361-481 chr9 95975857 95976211 + 2 NA intron (NM_020207, intron 16 of 18) HAL1M8|LINE|L1 45777 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 350-561 chrUn_GL000216v2 67884 68113 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 486-79 chr14 62544703 62545036 + 2 NA Intergenic L1ME2z|LINE|L1 -404896 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 747-26 chr17 66107033 66107594 + 2 NA intron (NM_001353129, intron 6 of 26) L1MA3|LINE|L1 84579 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 247-322 chr5 45275934 45276117 + 2 NA intron (NM_021072, intron 6 of 7) intron (NM_021072, intron 6 of 7) 420355 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 341-564 chr9 82288034 82288329 + 2 NA Intergenic L1M1|LINE|L1 299409 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 676-59 chr2 88308658 88309163 + 2 NA Intergenic FAM|SINE|Alu 135771 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 277-297 chr4 138658209 138658401 + 2 NA Intergenic Intergenic 348594 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 185-181 chr6 57264284 57264421 + 2 NA Intergenic Intergenic -1006 NR_109774 100506188 Hs.485640 NR_109774 LOC100506188 - uncharacterized LOC100506188 ncRNA 402-244 chr4 113871151 113871535 + 2 NA Intergenic MER4D|LTR|ERV1 108304 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 610-151 chr6 146045789 146046207 + 2 NA intron (NM_001278065, intron 2 of 9) MIRc|SINE|MIR 16800 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 746-60 chr5 41573897 41574470 + 2 NA Intergenic Intergenic -63582 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 617-46 chr15 92031662 92032047 + 2 NA intron (NR_135775, intron 2 of 10) L1MA3|LINE|L1 177550 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 172-72 chr3 18020810 18020962 + 2 NA intron (NR_161333, intron 3 of 4) L1ME4a|LINE|L1 58334 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 445-159 chr21 28631370 28631746 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger 92240 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 226-149 chr2 14808072 14808245 + 2 NA Intergenic MIRb|SINE|MIR 175441 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 343-338 chr3 65582942 65583136 + 2 NA intron (NM_001365904, intron 2 of 24) MER33|DNA|hAT-Charlie -310777 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 339-501 chr6 118679685 118679893 + 2 NA intron (NM_001178035, intron 1 of 13) MER102c|DNA|hAT-Charlie -28198 NM_001042475 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 311-20 chr1 107445954 107446169 + 2 NA intron (NM_001113226, intron 6 of 6) intron (NM_001113226, intron 6 of 6) 242438 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 224-92 chr14 84728478 84728669 + 2 NA Intergenic Intergenic -543359 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 655-123 chr8 89560396 89560749 + 2 NA Intergenic MER4D1|LTR|ERV1 197139 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 453-19 chr1 224979229 224979554 + 2 NA intron (NM_001349911, intron 8 of 10) L1M1|LINE|L1 49716 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 354-410 chr6 144372010 144372246 + 2 NA intron (NM_007124, intron 1 of 73) intron (NM_007124, intron 1 of 73) -33527 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 284-378 chr7 45394935 45395171 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR -179087 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 323-317 chr3 7790217 7790416 + 2 NA Intergenic LTR12|LTR|ERV1 225991 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 438-69 chr12 129021266 129021591 + 2 NA Intergenic L1ME4b|LINE|L1 -88262 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 393-355 chr8 86867016 86867279 + 2 NA intron (NM_173538, intron 1 of 10) intron (NM_173538, intron 1 of 10) 732 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 446-303 chr8 77680939 77681368 + 2 NA Intergenic Intergenic 230456 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 538-191 chr5 39180492 39180855 + 2 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 38890 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 520-255 chr6 69926210 69926573 + 2 NA intron (NM_001858, intron 4 of 50) L1M4|LINE|L1 59835 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 333-305 chr20 20157411 20157665 + 2 NA intron (NM_015585, intron 9 of 26) L1ME1|LINE|L1 100892 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 505-77 chr13 92492872 92493233 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 2889 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 429-165 chr2 169391373 169391718 + 2 NA Intergenic Intergenic -29011 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 233-266 chr4 81232501 81232662 + 2 NA Intergenic LTR86A1|LTR|ERVL -17359 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 948-36 chr8 136107011 136107720 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -423433 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 518-153 chr2 199573307 199573753 + 2 NA Intergenic L1M5|LINE|L1 -34538 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 251-407 chr8 135903299 135903480 + 2 NA Intergenic (CAAA)n|Simple_repeat|Simple_repeat 445933 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 351-508 chr9 11396741 11397012 + 2 NA Intergenic Intergenic 783670 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 278 chr1 25176217 25176416 + 2 NA Intergenic L1MB8|LINE|L1 56186 NM_207170 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 343-370 chr3 183220447 183220690 + 2 NA intron (NM_015078, intron 20 of 29) L1ME3G|LINE|L1 -32685 NM_032047 84002 Hs.718506 NM_032047 ENSG00000176597 B3GNT5 B3GN-T5|beta3Gn-T5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 protein-coding 257-296 chr4 55904297 55904479 + 2 NA exon (NM_018261, exon 19 of 19) exon (NM_018261, exon 19 of 19) -44557 NM_025009 9662 Hs.518767 NM_014645 ENSG00000174799 CEP135 CEP4|KIAA0635|MCPH8 centrosomal protein 135 protein-coding 477-145 chr2 33894491 33894938 + 2 NA intron (NR_126403, intron 2 of 5) MER41A|LTR|ERV1 -166497 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 356-463 chr7 125358413 125358603 + 2 NA intron (NR_110188, intron 7 of 8) intron (NR_110188, intron 7 of 8) -94217 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 183-45 chr14 46049277 46049392 + 2 NA Intergenic L1M4a1|LINE|L1 -14825 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 265-71 chr12 5753798 5753986 + 2 NA intron (NM_001278596, intron 10 of 25) L1MA10|LINE|L1 191367 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 311-361 chr3 193917357 193917630 + 2 NA Intergenic Intergenic -73484 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 416-295 chr6 78742610 78742837 + 2 NA Intergenic L1PA5|LINE|L1 -124828 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 336-441 chr5 4455413 4455621 + 2 NA Intergenic Intergenic -317964 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 308-318 chr4 31052677 31052843 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -118384 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 256-319 chr5 54952473 54952640 + 2 NA Intergenic Intergenic 33037 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 284-358 chr6 128861545 128861724 + 2 NA Intergenic L1MA2|LINE|L1 -21504 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 151-64 chr5 109405600 109405721 + 2 NA intron (NM_014819, intron 1 of 9) L1ME1|LINE|L1 4314 NM_014819 9867 Hs.483036 NM_014819 ENSG00000198961 PJA2 Neurodap1|RNF131 praja ring finger ubiquitin ligase 2 protein-coding 755-71 chr8 103536070 103536759 + 2 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -34504 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 161-109 chr7 97520652 97520804 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -211358 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 345-183 chr15 97559587 97559841 + 2 NA intron (NR_110756, intron 1 of 3) intron (NR_110756, intron 1 of 3) 984 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 575-45 chr13 80990728 80991132 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -27461 NR_125770 103724386 Hs.539622 NR_125770 LINC00377 TCONS_00021861 long intergenic non-protein coding RNA 377 ncRNA 265-87 chr13 31554031 31554205 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -185408 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 322-327 chr3 71508028 71508229 + 2 NA intron (NR_146142, intron 2 of 19) intron (NR_146142, intron 2 of 19) 33961 NR_031697 100302112 NR_031697 ENSG00000221264 MIR1284 MIRN1284|hsa-mir-1284|mir-1284 microRNA 1284 ncRNA 353-489 chr7 64196747 64197075 + 2 NA Intergenic MER41-int|LTR|ERV1 -10292 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 493-161 chr2 130955841 130956231 + 2 NA intron (NM_001367493, intron 4 of 13) L1M4b|LINE|L1 119122 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 343-153 chr14 101146577 101146804 + 2 NA Intergenic L1MB7|LINE|L1 25834 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 344-209 chr19 36481701 36481913 + 2 NA intron (NM_001145344, intron 1 of 4) L1MC4a|LINE|L1 7628 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 416-299 chr6 143115655 143116057 + 2 NA intron (NM_001366344, intron 2 of 6) intron (NM_001366344, intron 2 of 6) -10283 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 448-265 chr7 81007218 81007581 + 2 NA Intergenic Intergenic -85010 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 470-222 chr5 125658823 125659219 + 2 NA Intergenic Intergenic 165760 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 139-9 chr10 101559820 101559901 + 2 NA Intergenic L2c|LINE|L2 28397 NM_001174084 27343 Hs.523230 NM_013274 ENSG00000166169 POLL BETAN|POLKAPPA DNA polymerase lambda protein-coding 280-434 chr9 26875555 26875806 + 2 NA intron (NM_001167575, intron 4 of 5) intron (NM_001167575, intron 4 of 5) 17122 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 214-204 chr3 66908381 66908539 + 2 NA Intergenic L1ME4c|LINE|L1 -89847 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 486-152 chr2 126675961 126676291 + 2 NA intron (NM_016815, intron 1 of 2) intron (NM_016815, intron 1 of 2) 19968 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 210-42 chr11 50232538 50232739 + 2 NA Intergenic Intergenic 65824 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 295-101 chr12 70106907 70107132 + 2 NA Intergenic Intergenic -136011 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 248-263 chr3 197723536 197723728 + 2 NA intron (NM_001145642, intron 1 of 20) L1MA6|LINE|L1 13272 NM_014687 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 rubicon autophagy regulator protein-coding 308-483 chr8 37303266 37303467 + 2 NA Intergenic Intergenic 190547 NR_121620 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 305-68 chr10 72117242 72117405 + 2 NA intron (NM_001369103, intron 8 of 9) L1MEg|LINE|L1 -28291 NM_001134434 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 205-64 chr12 16462400 16462565 + 2 NA Intergenic Intergenic 109065 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 242-291 chr5 16871657 16871841 + 2 NA intron (NM_012334, intron 2 of 40) intron (NM_012334, intron 2 of 40) 64539 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 418-7 chr1 99219745 99220059 + 2 NA Intergenic L1MB1|LINE|L1 -44390 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 121-10 chr14 62167869 62167962 + 2 NA Intergenic HERV16-int|LTR|ERVL -27942 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 670-12 chr10 35915934 35916441 + 2 NA Intergenic Intergenic 137885 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 455-21 chr1 235525916 235526336 + 2 NA Intergenic AluSz|SINE|Alu -21674 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 289-445 chr7 105686890 105687124 + 2 NA intron (NM_020725, intron 3 of 11) intron (NM_020725, intron 3 of 11) -7845 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 503-198 chr3 90035963 90036312 + 2 NA Intergenic Intergenic 928516 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 270-226 chr22 45365607 45365783 + 2 NA intron (NM_148674, intron 15 of 24) AluJb|SINE|Alu 47252 NM_001349913 55007 Hs.265018 NM_017911 ENSG00000100376 FAM118A C22orf8 family with sequence similarity 118 member A protein-coding 418-45 chr11 80451893 80452194 + 2 NA Intergenic L2|LINE|L2 310760 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 512-282 chr8 130631766 130632274 + 2 NA Intergenic Intergenic -188346 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 216-152 chr19 56732958 56733125 + 2 NA Intergenic L2c|LINE|L2 -32281 NR_110744 101929059 Hs.607132 NR_110744 ENSG00000286125 ZIM2-AS1 ZIM2as ZIM2 antisense RNA 1 ncRNA 295-279 chr22 35460973 35461201 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 60947 NM_006739 4174 Hs.517582 NM_006739 ENSG00000100297 MCM5 CDC46|MGORS8|P1-CDC46 minichromosome maintenance complex component 5 protein-coding 198-264 chrX 86996156 86996280 + 2 NA Intergenic L1M1|LINE|L1 -521584 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 274-314 chr5 98198149 98198376 + 2 NA Intergenic Intergenic -37023 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 325-295 chr2 214009234 214009470 + 2 NA intron (NR_047660, intron 11 of 14) L1MEf|LINE|L1 251285 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 525-81 chr15 92702066 92702433 + 2 NA Intergenic AluJr4|SINE|Alu -46474 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 213-60 chr11 100335831 100336041 + 2 NA intron (NM_001243270, intron 20 of 23) intron (NM_001243270, intron 20 of 23) -351352 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 162-4 chr1 73455987 73456112 + 2 NA Intergenic (ATAC)n|Simple_repeat|Simple_repeat 149879 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 329-261 chr2 17211673 17211957 + 2 NA Intergenic L1MA9|LINE|L1 306625 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 505-218 chr4 57521829 57522242 + 2 NA Intergenic L1MA4|LINE|L1 96163 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 378-293 chr3 191100306 191100619 + 2 NA Intergenic Intergenic -98779 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 206-248 chr7 32234751 32234879 + 2 NA intron (NM_001322059, intron 1 of 17) L1ME1|LINE|L1 64513 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 360-251 chr2 211505452 211505704 + 2 NA intron (NM_001042599, intron 20 of 26) (CAAA)n|Simple_repeat|Simple_repeat 888007 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 385-282 chr4 132082786 132083116 + 2 NA Intergenic L2a|LINE|L2 318113 NR_125883 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 267-300 chr4 125018157 125018371 + 2 NA Intergenic L1ME3Cz|LINE|L1 -298148 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 368-169 chr16 6290524 6290832 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 270975 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 305-186 chr16 72698927 72699091 + 2 NA Intergenic AluSx1|SINE|Alu -34039 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 497-35 chr11 15797537 15798020 + 2 NA Intergenic Intergenic 153893 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 463-279 chr8 46395583 46395977 + 2 NA Intergenic ALR/Alpha|Satellite|centr 221863 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 385-17 chr1 211216993 211217268 + 2 NA Intergenic Intergenic -42147 NR_146432 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 467-273 chr8 17520673 17520970 + 2 NA intron (NM_001370338, intron 2 of 12) intron (NM_001370338, intron 2 of 12) -17956 NM_001164771 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 481-261 chr6 40094583 40094894 + 2 NA Intergenic L1PA5|LINE|L1 -160276 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 275-78 chr12 12389371 12389583 + 2 NA intron (NM_001300742, intron 2 of 3).2 intron (NM_001300742, intron 2 of 3).2 32399 NM_001330356 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 456-85 chr14 32703404 32703776 + 2 NA intron (NM_004274, intron 9 of 13) intron (NM_004274, intron 9 of 13) -235289 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 348-197 chr18 2817269 2817597 + 2 NA Intergenic L1M4c|LINE|L1 -29573 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 286-20 chr1 160505832 160506049 + 2 NA intron (NM_001184714, intron 1 of 7) L1MB5|LINE|L1 17315 NM_001184715 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 177-158 chr8 86847065 86847238 + 2 NA Intergenic L1M1|LINE|L1 -19264 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 322-568 chr9 87456052 87456332 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -41036 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 242-324 chr5 130719529 130719697 + 2 NA Intergenic L1PB4|LINE|L1 445643 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 188-98 chr2 78846158 78846333 + 2 NA Intergenic Intergenic -179457 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 513-10 chr1 164407126 164407485 + 2 NA Intergenic Intergenic -152055 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 628-41 chr14 47499595 47500060 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -156581 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 242-358 chr7 8360747 8360903 + 2 NA Intergenic L2a|LINE|L2 -72784 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 336-234 chr18 74605670 74605874 + 2 NA Intergenic Intergenic -7937 NR_024484 400657 Hs.61508 NM_001008234 ENSG00000264247 LINC00909 - long intergenic non-protein coding RNA 909 ncRNA 463-181 chr3 29202702 29203040 + 2 NA Intergenic MIR|SINE|MIR 78068 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 246-400 chr8 87049549 87049746 + 2 NA intron (NM_173538, intron 4 of 10) HUERS-P3-int|LTR|ERV1 183232 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 392-215 chr3 160536527 160536837 + 2 NA intron (NM_002268, intron 2 of 16) intron (NM_002268, intron 2 of 16) -21446 NR_003001 677767 Hs.675953 NR_003001 ENSG00000238741 SCARNA7 U90 small Cajal body-specific RNA 7 ncRNA 328-60 chr10 104979938 104980113 + 2 NA intron (NM_014978, intron 4 of 26) intron (NM_014978, intron 4 of 26) -313809 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 507-249 chr8 107441577 107441972 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) 56144 NM_001146 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 437-252 chr7 39442366 39442626 + 2 NA intron (NM_001370959, intron 7 of 9) intron (NM_001370959, intron 7 of 9) -36150 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 564-57 chr14 82775348 82775729 + 2 NA Intergenic Intergenic 132906 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 367-398 chr6 92575048 92575344 + 2 NA Intergenic Intergenic 844363 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 325-221 chr17 54776818 54777032 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -123766 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 161-117 chr8 76874639 76874784 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 92139 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 459-2 chr1 16188344 16188720 + 2 NA Intergenic AluSz|SINE|Alu 24120 NM_153213 128272 Hs.591532 NM_153213 ENSG00000142632 ARHGEF19 WGEF Rho guanine nucleotide exchange factor 19 protein-coding 518-274 chr7 38428615 38428955 + 2 NA intron (NM_001635, intron 14 of 20) intron (NM_001635, intron 14 of 20) 87208 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 239-139 chr18 3329770 3329961 + 2 NA Intergenic L2c|LINE|L2 20694 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 390-48 chr10 115943271 115943486 + 2 NA intron (NM_207303, intron 28 of 28) L1MC2|LINE|L1 251411 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 550-225 chr8 46158482 46158914 + 2 NA Intergenic ALR/Alpha|Satellite|centr 458945 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 258-279 chr4 10886315 10886516 + 2 NA Intergenic Intergenic -201647 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 291-32 chr1 211757973 211758212 + 2 NA intron (NM_014873, intron 6 of 7) intron (NM_014873, intron 6 of 7) -71545 NR_135818 102723727 Hs.147656 NR_135818 ENSG00000229258 LPGAT1-AS1 - LPGAT1 antisense RNA 1 ncRNA 378-285 chr3 83115980 83116301 + 2 NA Intergenic Intergenic 1129998 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 375-392 chr7 136309485 136309727 + 2 NA Intergenic L1MC4|LINE|L1 -332247 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 282-7 chr1 80025261 80025468 + 2 NA Intergenic Intergenic -510391 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 215-330 chr8 141858060 141858240 + 2 NA Intergenic (CATCAT)n|Simple_repeat|Simple_repeat -71837 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 369-302 chr4 130815395 130815655 + 2 NA Intergenic L1PA16|LINE|L1 439164 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 122-27 chr2 160715502 160715601 + 2 NA Intergenic MamGypLTR1d|LTR|Gypsy -221744 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 149-108 chrX 132802165 132802270 + 2 NA intron (NM_001077188, intron 3 of 5) intron (NM_001077188, intron 3 of 5) 134575 NR_046691 100874102 Hs.619341 NR_046691 ENSG00000235849 HS6ST2-AS1 - HS6ST2 antisense RNA 1 ncRNA 407-161 chr2 224751091 224751367 + 2 NA Intergenic Intergenic -165832 NM_001257197 8452 Hs.372286 NM_003590 ENSG00000036257 CUL3 CUL-3|PHA2E cullin 3 protein-coding 270-130 chr15 94635223 94635458 + 2 NA Intergenic Intergenic -220023 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 537-102 chr2 12593870 12594242 + 2 NA Intergenic Intergenic -122816 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 494-280 chr8 21653093 21653472 + 2 NA Intergenic L2a|LINE|L2 135593 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 286-191 chr2 20215738 20215948 + 2 NA intron (NM_001006946, intron 2 of 5) MIRb|SINE|MIR 9287 NM_002997 6382 Hs.224607 NM_002997 ENSG00000115884 SDC1 CD138|SDC|SYND1|syndecan syndecan 1 protein-coding 765-67 chr9 99548162 99548749 + 2 NA Intergenic L1MA3|LINE|L1 -173198 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 263-232 chr20 42431603 42431798 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -253783 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 449-55 chr12 58619806 58620209 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 28305 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 339-479 chr5 164051866 164052070 + 2 NA Intergenic Intergenic 415434 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 502-40 chr10 123731988 123732355 + 2 NA Intergenic MER21C|LTR|ERVL 65816 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 476-90 chr15 24633508 24633921 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -41680 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 207-32 chr10 25403052 25403212 + 2 NA intron (NM_020752, intron 3 of 10) L1ME4c|LINE|L1 -226856 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 492-194 chr4 96022962 96023334 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 183055 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 328-406 chr4 81492727 81493017 + 2 NA Intergenic Intergenic -20965 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 327-314 chr22 25579788 25579981 + 2 NA intron (NM_001362778, intron 1 of 19) L1MC5a|LINE|L1 15209 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 305-86 chr10 129152005 129152158 + 2 NA Intergenic Intergenic 239248 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 478-121 chr18 10022827 10023107 + 2 NA Intergenic LTR40c|LTR|ERVL 108951 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 227-350 chr7 67657032 67657171 + 2 NA Intergenic Intergenic 321125 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 471-8 chr1 82872727 82873042 + 2 NA Intergenic Intergenic -30299 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 456-262 chr5 156685042 156685334 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -165107 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 333-133 chr13 61842472 61842675 + 2 NA Intergenic Intergenic 186975 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 543-155 chr20 61823513 61823868 + 2 NA intron (NM_001252339, intron 3 of 14) intron (NM_001252339, intron 3 of 14) -103942 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 462-81 chr14 63871887 63872266 + 2 NA intron (NM_015180, intron 1 of 114) intron (NM_015180, intron 1 of 114) 19072 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 563-118 chr3 3492890 3493309 + 2 NA Intergenic L1MA4A|LINE|L1 -306332 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 453-34 chr10 129610886 129611259 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 143831 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 396-362 chr8 135166181 135166536 + 2 NA Intergenic Intergenic -67773 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 274-139 chr15 46741470 46741641 + 2 NA Intergenic Intergenic -442534 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 239-12 chr1 170170235 170170396 + 2 NA Intergenic Intergenic -4064 NR_146891 105371609 Hs.508115 NR_146891 LINC01681 - long intergenic non-protein coding RNA 1681 ncRNA 336-559 chr8 132632967 132633270 + 2 NA intron (NR_073525, intron 4 of 12) intron (NR_073525, intron 4 of 12) 42427 NR_073525 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 326-308 chr21 27427138 27427322 + 2 NA Intergenic Intergenic -295149 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 347-370 chr5 8548446 8548637 + 2 NA Intergenic LTR79|LTR|ERVL 87616 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 387-404 chrX 93414361 93414682 + 2 NA Intergenic L1M1|LINE|L1 259057 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 383-128 chr15 59337869 59338160 + 2 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 34857 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 403-250 chr5 75284254 75284615 + 2 NA Intergenic L1M1|LINE|L1 -47556 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 383-237 chr22 28393319 28393585 + 2 NA intron (NM_001145418, intron 2 of 22) AluJo|SINE|Alu -66417 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 535-114 chr19 23907299 23907745 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -7364 NM_001348687 730087 Hs.655305 NM_001190829 ENSG00000213967 ZNF726 ZNF92P3 zinc finger protein 726 protein-coding 306-24 chr1 111862533 111862773 + 2 NA intron (NM_172198, intron 2 of 6) MIR|SINE|MIR -5748 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 344-159 chr15 81981816 81982027 + 2 NA Intergenic Intergenic 64097 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 393-311 chr6 117818906 117819267 + 2 NA Intergenic L1MEf|LINE|L1 -88178 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 495-213 chr6 40672947 40673403 + 2 NA Intergenic Intergenic -85811 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 414-339 chr8 132807082 132807379 + 2 NA intron (NM_198513, intron 7 of 7) intron (NM_198513, intron 7 of 7) 31842 NM_016018 51105 Hs.304362 NM_016018 ENSG00000129292 PHF20L1 CGI-72|TDRD20B|URLC1 PHD finger protein 20 like 1 protein-coding 624-65 chr2 81833793 81834210 + 2 NA Intergenic L1MA7|LINE|L1 -367055 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 339-243 chr2 13270294 13270516 + 2 NA Intergenic L1ME2|LINE|L1 -263392 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 127-74 chr7 53266270 53266362 + 2 NA Intergenic L1MB8|LINE|L1 230683 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 692-99 chr8 83511573 83512043 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 108050 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 164-14 chr10 63540374 63540488 + 2 NA intron (NM_001001330, intron 1 of 7) intron (NM_001001330, intron 1 of 7) -18541 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 505-109 chr16 79070577 79071031 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 529933 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 207-66 chr12 52385248 52385432 + 2 NA exon (NM_033045, exon 1 of 9) exon (NM_033045, exon 1 of 9) 312 NM_033045 3890 Hs.272336 NM_033045 ENSG00000161849 KRT84 HB4|KRTHB4 keratin 84 protein-coding 313-431 chr5 61894291 61894463 + 2 NA Intergenic L1MEc|LINE|L1 -158679 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 346-61 chr11 14151736 14152005 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 189147 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 241-138 chr16 82323114 82323265 + 2 NA Intergenic L1M2|LINE|L1 -152965 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 323-315 chr3 4099755 4100042 + 2 NA Intergenic L1MA6|LINE|L1 -203406 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 523-123 chr2 21449825 21450244 + 2 NA Intergenic Intergenic 260618 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 313-49 chr10 67376423 67376704 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 26847 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 162-128 chr8 50947246 50947382 + 2 NA Intergenic MIR1_Amn|SINE|MIR 783183 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 225-247 chr4 67449010 67449185 + 2 NA Intergenic L1MC1|LINE|L1 -27097 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 305-203 chr17 73599928 73600108 + 2 NA intron (NM_001144952, intron 1 of 44) Charlie23a|DNA|hAT-Charlie 44427 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 478-141 chr2 80228603 80229013 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 75944 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 640-147 chr9 114758697 114759117 + 2 NA Intergenic L1PB3|LINE|L1 33623 NM_001204344 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 168-31 chr14 62717509 62717624 + 2 NA intron (NM_172375, intron 9 of 9) L1MB7|LINE|L1 327892 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 924-33 chr5 45863765 45864444 + 2 NA Intergenic LTR16B|LTR|ERVL -167724 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 250-373 chr6 62341042 62341212 + 2 NA Intergenic L1P4a|LINE|L1 -54900 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 146-78 chr6 70644929 70645057 + 2 NA Intergenic L2c|LINE|L2 -22890 NM_001044305 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 316-373 chr3 180402760 180402964 + 2 NA Intergenic MLT2B4|LTR|ERVL -11311 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 354-487 chr8 139505542 139505812 + 2 NA Intergenic Intergenic 197446 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 335-350 chr3 80001902 80002184 + 2 NA Intergenic Intergenic -234045 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 662-27 chr15 32961574 32962180 + 2 NA intron (NM_001277313, intron 9 of 20) MIRb|SINE|MIR 106297 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 251-414 chr9 28501512 28501662 + 2 NA intron (NM_152570, intron 2 of 6) L1MEi|LINE|L1 217718 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 338-147 chr13 43327328 43327552 + 2 NA intron (NM_001347966, intron 10 of 17) intron (NM_001347966, intron 10 of 17) -121412 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 200-117 chr19 41098356 41098514 + 2 NA Intergenic L1MC2|LINE|L1 9984 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 222-143 chr18 5934527 5934677 + 2 NA Intergenic Intergenic -38648 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 412-76 chr13 37256686 37257059 + 2 NA Intergenic Intergenic -151208 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 463-67 chr12 33854150 33854513 + 2 NA Intergenic L1MA9|LINE|L1 -168165 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 557-127 chr3 1788755 1789090 + 2 NA Intergenic Intergenic -309881 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 424-175 chr3 84481235 84481595 + 2 NA Intergenic L1MA5|LINE|L1 388160 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 236-304 chr6 73621843 73621999 + 2 NA exon (NM_012434, exon 7 of 11) exon (NM_012434, exon 7 of 11) 32071 NM_012434 26503 Hs.597422 NM_012434 ENSG00000119899 SLC17A5 AST|ISSD|NSD|SD|SIALIN|SIASD|SLD solute carrier family 17 member 5 protein-coding 255-260 chr3 79342879 79343067 + 2 NA intron (NM_002941, intron 2 of 30) L1MC1|LINE|L1 -68754 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 237-169 chr2 41682648 41682798 + 2 NA Intergenic L1MC1|LINE|L1 -194832 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 209-10 chr1 109721260 109721406 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 9082 NM_000851 2949 Hs.75652 NM_000851 ENSG00000134201 GSTM5 GSTM5-5|GTM5 glutathione S-transferase mu 5 protein-coding 548-67 chr14 37379596 37380045 + 2 NA intron (NM_138731, intron 11 of 13) intron (NM_138731, intron 11 of 13) 181883 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 231-80 chr13 43692372 43692530 + 2 NA intron (NM_001347969, intron 1 of 16) L1ME4a|LINE|L1 -62974 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 344-57 chr10 88788432 88788646 + 2 NA Intergenic Intergenic -14191 NM_001128215 340654 Hs.55118 NM_001128215 ENSG00000173239 LIPM LIPL3|bA304I5.1 lipase family member M protein-coding 530-159 chr22 44371214 44371617 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -58464 NM_001099294 85352 Hs.6829 NM_001099294 ENSG00000138944 SHISAL1 KIAA1644 shisa like 1 protein-coding 625-48 chr2 86440127 86440601 + 2 NA Intergenic Intergenic -1007 NM_018433 55818 Hs.557425 NM_018433 ENSG00000115548 KDM3A JHDM2A|JHMD2A|JMJD1|JMJD1A|TSGA lysine demethylase 3A protein-coding 325-178 chr15 25820740 25820957 + 2 NA intron (NM_024490, intron 1 of 20) intron (NM_024490, intron 1 of 20) 27977 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 338-56 chr10 44438184 44438446 + 2 NA Intergenic Intergenic -53218 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 276-326 chr4 37470037 37470237 + 2 NA intron (NM_001104629, intron 1 of 3) intron (NM_001104629, intron 1 of 3) 16212 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 335-166 chr14 87809369 87809592 + 2 NA Intergenic Intergenic -154186 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 284-92 chr12 76429861 76430098 + 2 NA intron (NM_001003712, intron 3 of 22) L1MA9|LINE|L1 -6694 NM_001319655 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 558-29 chr11 29961134 29961544 + 2 NA Intergenic Intergenic 21054 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 195-118 chr2 156815708 156815877 + 2 NA Intergenic L1M5|LINE|L1 379413 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 352-274 chr2 237047255 237047486 + 2 NA Intergenic L2b|LINE|L2 8797 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 289-197 chr19 9377110 9377285 + 2 NA intron (NM_001172650, intron 7 of 11) Tigger3b|DNA|TcMar-Tigger 881 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 749-37 chr15 100279521 100280103 + 2 NA intron (NM_139057, intron 4 of 21) intron (NM_139057, intron 4 of 21) 62163 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 232-252 chr3 117301421 117301578 + 2 NA Intergenic L2a|LINE|L2 380068 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 286-204 chr2 57223938 57224197 + 2 NA Intergenic Intergenic -683584 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 282-357 chr4 157661546 157661776 + 2 NA Intergenic Intergenic 89171 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 227-336 chr7 22870367 22870526 + 2 NA Intergenic LTR16C|LTR|ERVL 13833 NR_003075 692210 NR_003075 ENSG00000221740 SNORD93 HBII-336 small nucleolar RNA, C/D box 93 snoRNA 170-36 chr12 73365289 73365456 + 2 NA Intergenic L1ME2|LINE|L1 206182 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 302-346 chr5 45783966 45784225 + 2 NA Intergenic L1ME1|LINE|L1 -87715 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 128-90 chrX 135314844 135314930 + 2 NA intron (NM_007131, intron 1 of 6) L1MA4A|LINE|L1 5407 NM_001358449 110806299 NM_001358449 ENSG00000283644 ETDC - embryonic testis differentiation homolog C protein-coding 297-269 chr20 58563388 58563593 + 2 NA intron (NR_034147, intron 6 of 6) L1ME1|LINE|L1 -48091 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 207-195 chr3 102973722 102973840 + 2 NA Intergenic Intergenic 538766 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 357-251 chr21 30682403 30682692 + 2 NA Intergenic Intergenic 36230 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 354-428 chr7 42528595 42528818 + 2 NA Intergenic L1PA11|LINE|L1 177741 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 207-278 chr7 126166598 126166785 + 2 NA Intergenic L1MC4|LINE|L1 891493 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 359-420 chr6 22437705 22437958 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -131735 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 347-48 chr10 44238132 44238445 + 2 NA Intergenic Intergenic -54462 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 232-206 chr2 213039837 213040012 + 2 NA intron (NM_001371277, intron 5 of 6) intron (NM_001371277, intron 5 of 6) 110513 NM_016260 22807 Hs.604950 NM_016260 ENSG00000030419 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 protein-coding 318-567 chr9 20267493 20267714 + 2 NA Intergenic Intergenic 143635 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 548-21 chr10 14671650 14672084 + 2 NA intron (NM_031453, intron 1 of 4) MLT1K|LTR|ERVL-MaLR -67466 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 136-31 chr16 21946398 21946482 + 2 NA Intergenic Intergenic -6921 NM_003366 7385 Hs.528803 NM_003366 ENSG00000140740 UQCRC2 MC3DN5|QCR2|UQCR2 ubiquinol-cytochrome c reductase core protein 2 protein-coding 305-455 chr5 155926517 155926728 + 2 NA Intergenic L1ME4a|LINE|L1 -400135 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 292-206 chr2 33093432 33093596 + 2 NA intron (NM_206943, intron 3 of 33) intron (NM_206943, intron 3 of 33) -41083 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 312-455 chr6 92409529 92409765 + 2 NA Intergenic MER51A|LTR|ERV1 -719219 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 416-89 chr12 27272218 27272564 + 2 NA intron (NM_015000, intron 1 of 13) intron (NM_015000, intron 1 of 13) 28105 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 289-144 chr14 92310900 92311115 + 2 NA Intergenic Intergenic -11574 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 191-194 chr7 8359002 8359174 + 2 NA Intergenic MIR|SINE|MIR -74521 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 321-221 chr16 78399065 78399244 + 2 NA intron (NM_001291997, intron 5 of 7) (GGAT)n|Simple_repeat|Simple_repeat 299500 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 317-416 chr6 66056336 66056601 + 2 NA Intergenic L1MCa|LINE|L1 268589 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 312-236 chr2 63808022 63808293 + 2 NA Intergenic Intergenic -32807 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 551-120 chr3 86747451 86747951 + 2 NA Intergenic MER31-int|LTR|ERV1 243448 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 435-168 chr4 59355128 59355443 + 2 NA Intergenic L1PA13|LINE|L1 341712 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 193-69 chr15 95165138 95165321 + 2 NA Intergenic L1MEd|LINE|L1 161871 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 437-202 chr4 168468830 168469111 + 2 NA intron (NM_001345927, intron 4 of 37) L1ME2z|LINE|L1 11522 NM_001345927 91351 Hs.535011 NM_001012967 ENSG00000181381 DDX60L - DExD/H-box 60 like protein-coding 310-381 chr4 138353516 138353690 + 2 NA intron (NR_051987, intron 1 of 2) AluSc|SINE|Alu 43892 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 404-204 chr22 43714049 43714389 + 2 NA intron (NM_198856, intron 7 of 29) HAL1b|LINE|L1 98086 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 366-160 chr17 31659983 31660280 + 2 NA Intergenic Intergenic 84720 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 512-127 chr2 115758920 115759300 + 2 NA intron (NM_001321907, intron 10 of 23) L1ME2z|LINE|L1 415295 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 323-551 chr8 88411938 88412155 + 2 NA Intergenic Intergenic -84563 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 329-187 chr15 56291160 56291354 + 2 NA Intergenic Intergenic -46175 NM_001370561 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 323-198 chr18 29232566 29232799 + 2 NA Intergenic L1MB2|LINE|L1 -1055552 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 341-78 chr11 29134636 29134915 + 2 NA Intergenic Intergenic -459638 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 314-333 chr20 8038434 8038657 + 2 NA Intergenic Intergenic -18784 NM_021156 56255 Hs.169358 NM_021156 ENSG00000125827 TMX4 DJ971N18.2|PDIA14|TXNDC13 thioredoxin related transmembrane protein 4 protein-coding 198-257 chr9 31856034 31856193 + 2 NA Intergenic L1PA15|LINE|L1 -474623 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 292-277 chr3 24799769 24800014 + 2 NA Intergenic AluJr|SINE|Alu -29432 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 257-179 chr2 30277509 30277684 + 2 NA Intergenic Intergenic 46062 NM_030915 81606 Hs.567598 NM_030915 ENSG00000213626 LBH - LBH regulator of WNT signaling pathway protein-coding 299-284 chr3 85393379 85393594 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 7776 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 324-11 chr1 77518836 77519013 + 2 NA intron (NM_012093, intron 11 of 13) MLT1J|LTR|ERVL-MaLR 163734 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 389-265 chr4 75394419 75394760 + 2 NA Intergenic Intergenic 40513 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 388-32 chr1 225154260 225154567 + 2 NA intron (NM_001367479, intron 34 of 85) L1MC5a|LINE|L1 224738 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 470-103 chr18 50661918 50662217 + 2 NA intron (NM_001292039, intron 1 of 4) intron (NM_001292039, intron 1 of 4) 101980 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 197-195 chr7 54505014 54505152 + 2 NA Intergenic L1M4a2|LINE|L1 -37242 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 792-51 chr5 166270461 166271082 + 2 NA Intergenic Intergenic 655599 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 545-176 chr5 15277627 15278062 + 2 NA Intergenic Intergenic -11284 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 279-230 chr21 16926981 16927158 + 2 NA Intergenic FRAM|SINE|Alu 336832 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 306-386 chr5 21209708 21209944 + 2 NA Intergenic Intergenic -249654 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 427-250 chr7 110674847 110675162 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -416002 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 776-29 chr20 14280530 14281018 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 56838 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 340-153 chr14 64473057 64473342 + 2 NA 3' UTR (NM_004857, exon 2 of 2) 3' UTR (NM_004857, exon 2 of 2) 7700 NM_004857 9495 Hs.656683 NM_004857 ENSG00000179841 AKAP5 AKAP75|AKAP79|H21 A-kinase anchoring protein 5 protein-coding 346-35 chr1 216351614 216351829 + 2 NA intron (NM_206933, intron 4 of 71) L2a|LINE|L2 71675 NM_007123 7399 Hs.655974 NM_007123 ENSG00000042781 USH2A RP39|US2|USH2|dJ1111A8.1 usherin protein-coding 328-341 chr3 34426228 34426476 + 2 NA Intergenic L1PREC2|LINE|L1 627722 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 351-89 chr12 20285734 20285949 + 2 NA Intergenic L1MC1|LINE|L1 -83404 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 548-181 chr5 62104086 62104583 + 2 NA Intergenic HERVL-int|LTR|ERVL -201828 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 271-479 chr9 80668080 80668276 + 2 NA Intergenic L1PA7|LINE|L1 693155 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 515-280 chrX 67955583 67956067 + 2 NA Intergenic L2a|LINE|L2 411202 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 390-81 chr13 38435170 38435422 + 2 NA Intergenic Intergenic 85445 NM_001286706 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 357-42 chr10 87571763 87572002 + 2 NA Intergenic L1MA4A|LINE|L1 64049 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 279-148 chr18 65217956 65218147 + 2 NA Intergenic Intergenic -532201 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 317-478 chr8 59558234 59558496 + 2 NA Intergenic Intergenic 439155 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 321-442 chr4 175017010 175017215 + 2 NA Intergenic Intergenic 98754 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 264-231 chr20 7326624 7326787 + 2 NA Intergenic Intergenic -19273 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 285-339 chr5 66265007 66265219 + 2 NA Intergenic L1M8|LINE|L1 -55667 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 235-245 chr4 32689281 32689477 + 2 NA Intergenic Intergenic 338341 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 512-146 chr20 19389151 19389447 + 2 NA intron (NM_020689, intron 2 of 16) L1MA9|LINE|L1 -104703 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 274-177 chr18 63763454 63763659 + 2 NA intron (NM_001040147, intron 1 of 7) intron (NM_001040147, intron 1 of 7) 10509 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 499-173 chr3 107296930 107297355 + 2 NA intron (NR_028302, intron 2 of 3) L1ME1|LINE|L1 56450 NR_028301 344595 Hs.543039 NR_028301 ENSG00000243701 DUBR DUM|LINC00883|LINC0883 DPPA2 upstream binding RNA ncRNA 317-348 chr4 53736816 53737081 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 41047 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 313-472 chr6 91569365 91569652 + 2 NA Intergenic Intergenic 47848 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 372-510 chr9 12531037 12531402 + 2 NA Intergenic Intergenic -162166 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 275-46 chr10 61491638 61491781 + 2 NA intron (NR_120643, intron 5 of 5) A-rich|Low_complexity|Low_complexity 11668 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 242-25 chr1 206146718 206146885 + 2 NA Intergenic Intergenic -29413 NM_000707 553 Hs.1372 NM_000707 ENSG00000198049 AVPR1B AVPR3|V1bR arginine vasopressin receptor 1B protein-coding 526-195 chr5 29529723 29530208 + 2 NA Intergenic Intergenic -133989 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 447-204 chr5 18353000 18353242 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 545847 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 847-39 chr5 38220253 38220799 + 2 NA Intergenic L2|LINE|L2 -38033 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 239-300 chr5 20417198 20417408 + 2 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 111752 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 229-177 chr2 44833289 44833466 + 2 NA Intergenic MLT1M|LTR|ERVL-MaLR 105511 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 524-97 chr18 35116961 35117460 + 2 NA intron (NM_001143827, intron 5 of 7) intron (NM_001143827, intron 5 of 7) 75797 NR_046177 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 199-157 chr3 5959283 5959429 + 2 NA Intergenic L1MA9|LINE|L1 -709101 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 836-42 chr4 89513087 89513577 + 2 NA Intergenic Intergenic -205532 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 255-246 chr22 39872219 39872407 + 2 NA intron (NM_152512, intron 2 of 6) intron (NM_152512, intron 2 of 6) 21447 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 355-67 chr10 111217659 111217897 + 2 NA Intergenic L1MC4a|LINE|L1 103487 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 347-93 chr12 51700195 51700385 + 2 NA intron (NM_001369788, intron 7 of 25) intron (NM_001369788, intron 7 of 25) 109054 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 264-299 chr4 102117545 102117731 + 2 NA Intergenic L1MA3|LINE|L1 206674 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 462-206 chr4 72119038 72119312 + 2 NA intron (NM_001144756, intron 2 of 4) HAL1b|LINE|L1 80043 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 303-241 chr2 238470589 238470766 + 2 NA Intergenic L1M2|LINE|L1 43750 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 334-21 chr1 102470590 102470894 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -473508 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 524-292 chrX 99347058 99347402 + 2 NA Intergenic L1PREC2|LINE|L1 1063043 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 341-30 chr1 164016469 164016720 + 2 NA Intergenic L1MC3|LINE|L1 -542766 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 558-207 chr8 29257907 29258292 + 2 NA intron (NM_015254, intron 1 of 39) intron (NM_015254, intron 1 of 39) 4971 NM_015254 23303 Hs.444767 NM_015254 ENSG00000197892 KIF13B GAKIN kinesin family member 13B protein-coding 866-34 chr5 38747267 38747983 + 2 NA intron (NR_109951, intron 2 of 3) MER33|DNA|hAT-Charlie -27352 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 230-5 chr1 57286813 57286990 + 2 NA intron (NM_001353980, intron 5 of 5) L1M5|LINE|L1 136211 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 426-189 chr3 158935392 158935790 + 2 NA Intergenic L2a|LINE|L2 133537 NR_110328 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 420-44 chr10 97197128 97197344 + 2 NA intron (NR_037909, intron 11 of 14) intron (NR_037909, intron 11 of 14) -11277 NM_003061 6585 Hs.632082 NM_003061 ENSG00000187122 SLIT1 MEGF4|SLIL1|SLIT-1|SLIT3 slit guidance ligand 1 protein-coding 590-95 chr20 60374179 60374575 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 65903 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 325-126 chr12 47552786 47553066 + 2 NA Intergenic Intergenic 137918 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 324-307 chr20 20888657 20888900 + 2 NA Intergenic Intergenic -176134 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 178-126 chr7 4372230 4372360 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie -237458 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 377-185 chr2 3955009 3955358 + 2 NA Intergenic Intergenic 18849 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 242-322 chr5 129859427 129859609 + 2 NA Intergenic Intergenic -44947 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 262-41 chr10 30009056 30009243 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 50437 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 619-60 chr17 65857026 65857565 + 2 NA intron (NM_001353129, intron 20 of 26) MER107|DNA|hAT-Charlie -30752 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 198-263 chrX 75106428 75106581 + 2 NA intron (NM_001271696, intron 3 of 15) L1P4|LINE|L1 49779 NM_001271697 22 Hs.370480 NM_004299 ENSG00000131269 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP binding cassette subfamily B member 7 protein-coding 202-169 chr3 88689059 88689227 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 350687 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 484-200 chr5 2899844 2900259 + 2 NA Intergenic Intergenic -17803 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 318-296 chr2 172198815 172198983 + 2 NA Intergenic Intergenic 95893 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 468-25 chr10 29186310 29186568 + 2 NA Intergenic Intergenic -102631 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 258-48 chr10 44241368 44241522 + 2 NA Intergenic Intergenic -51305 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 309-542 chr8 78998541 78998772 + 2 NA Intergenic L1PA7|LINE|L1 161127 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 395-215 chr3 8354536 8354923 + 2 NA intron (NR_033378, intron 3 of 3) MER104|DNA|TcMar-Tc2 146929 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 366-382 chr6 126920631 126920913 + 2 NA Intergenic MER33|DNA|hAT-Charlie -197899 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 351-179 chr17 74062445 74062670 + 2 NA Intergenic Intergenic -141121 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 303-380 chr5 152544693 152544928 + 2 NA Intergenic L1MA4|LINE|L1 -139531 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 378-114 chr13 22492370 22492656 + 2 NA Intergenic Intergenic 282228 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 361-31 chr10 9644427 9644735 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -348988 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 198-156 chr3 17989250 17989393 + 2 NA intron (NR_161333, intron 1 of 4) intron (NR_161333, intron 1 of 4) 26769 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 325-514 chr7 104603601 104603892 + 2 NA intron (NM_199000, intron 1 of 2) MLT-int|LTR|ERVL-MaLR 200346 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 372-42 chr10 39237525 39237822 + 2 NA Intergenic ALR/Alpha|Satellite|centr 541077 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 241-10 chr1 69823336 69823573 + 2 NA intron (NM_001370785, intron 4 of 26) intron (NM_001370785, intron 4 of 26) -95868 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 253-51 chr10 54253885 54254045 + 2 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -232265 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 276-393 chr6 27869225 27869429 + 2 NA Intergenic Intergenic -1746 NM_005322 3009 Hs.131956 NM_005322 ENSG00000184357 HIST1H1B H1|H1.5|H1B|H1F5|H1s-3 histone cluster 1 H1 family member b protein-coding 273-427 chr7 68084438 68084693 + 2 NA Intergenic AluJo|SINE|Alu 64312 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 289-338 chr4 63984649 63984803 + 2 NA Intergenic Intergenic 424724 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 326-482 chr7 8941511 8941782 + 2 NA Intergenic Intergenic 508037 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 372-451 chr7 23811116 23811424 + 2 NA intron (NM_001260505, intron 22 of 22) intron (NM_001260505, intron 22 of 22) 101051 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 362-104 chr11 130543557 130543821 + 2 NA Intergenic Intergenic 94715 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 405-225 chr4 56472487 56472782 + 2 NA intron (NR_151856, intron 3 of 19) AluSz6|SINE|Alu 5017 NM_001267722 6731 Hs.237825 NM_006947 ENSG00000174780 SRP72 BMFF|BMFS1|HEL103 signal recognition particle 72 protein-coding 225-252 chr4 137912706 137912893 + 2 NA Intergenic LTR78B|LTR|ERV1 -176215 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 377-435 chrX 63431165 63431470 + 2 NA intron (NR_152612, intron 2 of 2) LTR46-int|LTR|ERV1 -79985 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 266-363 chr6 55863751 55863929 + 2 NA intron (NM_001329754, intron 1 of 5) Tigger3c|DNA|TcMar-Tigger 11750 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 342-311 chr3 54054713 54054968 + 2 NA Intergenic (TCATCA)n|Simple_repeat|Simple_repeat -67712 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 450-287 chr7 108693697 108694026 + 2 NA Intergenic L1MA1|LINE|L1 123987 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 295-267 chr21 25220600 25220886 + 2 NA Intergenic L1M1|LINE|L1 210958 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 325-542 chr8 108548151 108548428 + 2 NA Intergenic Intergenic 104665 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 588-74 chr2 132728665 132728999 + 2 NA exon (NM_207363, exon 18 of 20) exon (NM_207363, exon 18 of 20) -57306 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 251-168 chr2 57029706 57029947 + 2 NA Intergenic Intergenic -844056 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 268-175 chr19 56480919 56481118 + 2 NA intron (NR_036521, intron 1 of 1) LTR32|LTR|ERVL 2894 NR_036522 100128252 Hs.23133 NM_198879 ENSG00000166770 ZNF667-AS1 MORT ZNF667 antisense RNA 1 (head to head) ncRNA 305-503 chr7 37331373 37331538 + 2 NA intron (NM_001206480, intron 2 of 21) AluY|SINE|Alu 22213 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 250-449 chr8 144592055 144592206 + 2 NA intron (NM_025251, intron 1 of 10) intron (NM_025251, intron 1 of 10) 13565 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 310-13 chr1 107216960 107217169 + 2 NA intron (NM_001113226, intron 1 of 6) L1PB1|LINE|L1 68995 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 418-218 chr5 79027555 79027837 + 2 NA intron (NM_013391, intron 12 of 15) intron (NM_013391, intron 12 of 15) -41738 NM_198709 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 348-355 chr4 52285703 52286010 + 2 NA Intergenic Intergenic 234552 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 260-302 chr4 34490553 34490749 + 2 NA Intergenic L1MA3|LINE|L1 -220904 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 144-26 chr14 45205452 45205533 + 2 NA intron (NM_018353, intron 15 of 16) intron (NM_018353, intron 15 of 16) 47710 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 238-367 chr7 138372062 138372294 + 2 NA Intergenic L1MC4a|LINE|L1 -88081 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 350-409 chr5 121600297 121600556 + 2 NA Intergenic L1MA8|LINE|L1 -251456 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 431-320 chr9 88854851 88855108 + 2 NA Intergenic Intergenic -109074 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 370-5 chr1 66032294 66032590 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 18276 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 256-359 chr6 62677238 62677480 + 2 NA Intergenic L1M4c|LINE|L1 -391132 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 416-28 chr10 5165690 5165913 + 2 NA intron (NR_027916, intron 1 of 7) LTR25-int|LTR|ERV1 19386 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 895-26 chr3 2169298 2169922 + 2 NA intron (NM_175607, intron 2 of 24) AluY|SINE|Alu -25369 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 418-288 chr8 92705782 92706048 + 2 NA Intergenic Intergenic -50421 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 307-56 chr10 56943524 56943701 + 2 NA Intergenic L2c|LINE|L2 360947 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 725-22 chr14 45838823 45839317 + 2 NA Intergenic Intergenic -123468 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 398-190 chr20 56080383 56080601 + 2 NA Intergenic L1ME1|LINE|L1 -74973 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 353-46 chr10 13437502 13437774 + 2 NA TTS (NM_152751) TTS (NM_152751) 65338 NM_152751 222389 Hs.498740 NM_152751 ENSG00000165626 BEND7 C10orf30 BEN domain containing 7 protein-coding 467-89 chr15 58327845 58328217 + 2 NA Intergenic L1M2|LINE|L1 -103960 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 200-176 chr3 84707020 84707174 + 2 NA intron (NR_033860, intron 11 of 20) L2|LINE|L2 162478 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 252-390 chr7 15773657 15773854 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 85377 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 305-485 chr6 136872871 136873161 + 2 NA intron (NM_000288, intron 8 of 9) L1MC4a|LINE|L1 -49285 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 517-96 chr16 81186721 81187230 + 2 NA intron (NM_001076780, intron 10 of 17) L1ME4c|LINE|L1 -5644 NM_001278425 114780 Hs.413525 NM_052892 ENSG00000166473 PKD1L2 PC1L2 polycystin 1 like 2 (gene/pseudogene) protein-coding 303-485 chr9 12235761 12236056 + 2 NA Intergenic Intergenic -457477 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 380-226 chr21 29980903 29981191 + 2 NA Intergenic Intergenic -40995 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 331-102 chr11 100278905 100279176 + 2 NA intron (NM_001243270, intron 17 of 23) L1MA2|LINE|L1 -408248 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 287-36 chr1 230436549 230436792 + 2 NA Intergenic Intergenic -10338 NM_001258311 79605 Hs.520463 NM_024554 ENSG00000177614 PGBD5 - piggyBac transposable element derived 5 protein-coding 363-251 chr20 16797264 16797565 + 2 NA Intergenic L1PA12|LINE|L1 49061 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 301-308 chr4 40387437 40387599 + 2 NA Intergenic L1MC1|LINE|L1 52185 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 408-208 chr3 53418208 53418515 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -70818 NM_001290205 55802 Hs.476353 NM_018403 ENSG00000272886 DCP1A HSA275986|Nbla00360|SMAD4IP1|SMIF decapping mRNA 1A protein-coding 309-454 chr5 125686179 125686364 + 2 NA Intergenic L1M4c|LINE|L1 193010 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 372-245 chr2 104974426 104974792 + 2 NA intron (NR_110603, intron 1 of 2) MLT1G|LTR|ERVL-MaLR -63460 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 217-121 chr14 82678419 82678615 + 2 NA intron (NR_146650, intron 2 of 5) intron (NR_146650, intron 2 of 5) 35885 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 262-301 chr4 19279633 19279804 + 2 NA Intergenic MIR|SINE|MIR -972187 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 275-113 chr14 70510100 70510298 + 2 NA Intergenic L1M2|LINE|L1 24805 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 452-100 chr16 26942235 26942529 + 2 NA Intergenic Intergenic -124545 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 293-56 chr11 25988307 25988534 + 2 NA Intergenic LTR47A|LTR|ERVL -200703 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 316-95 chr11 40405743 40405905 + 2 NA intron (NM_020929, intron 2 of 4) MLT1J|LTR|ERVL-MaLR -112694 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 386-137 chr18 5119255 5119536 + 2 NA Intergenic L1MA3|LINE|L1 38213 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 308-59 chr10 56335373 56335671 + 2 NA Intergenic L1M1|LINE|L1 25737 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 233-95 chr14 64860166 64860320 + 2 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) 19664 NM_001355437 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 222-232 chr3 56941853 56941983 + 2 NA intron (NR_046572, intron 2 of 2) intron (NR_046572, intron 2 of 2) 1878 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 341-484 chr7 8094900 8095087 + 2 NA Intergenic Intergenic 126197 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 121-69 chr8 123299088 123299185 + 2 NA Intergenic L1M5|LINE|L1 -23595 NR_037873 11244 Hs.521800 NM_007222 ENSG00000165156 ZHX1 - zinc fingers and homeoboxes 1 protein-coding 577-40 chr11 22596954 22597398 + 2 NA Intergenic L1M7|LINE|L1 28665 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 302-352 chr5 91652601 91652800 + 2 NA Intergenic L1PB4|LINE|L1 -269383 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 309-362 chr3 128926013 128926312 + 2 NA intron (NM_001348520, intron 11 of 14) L1M5|LINE|L1 46542 NM_014049 28976 Hs.567482 NM_014049 ENSG00000177646 ACAD9 MC1DN20|NPD002 acyl-CoA dehydrogenase family member 9 protein-coding 245-63 chr11 8175420 8175611 + 2 NA Intergenic Intergenic -6490 NM_001206672 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 375-345 chr5 171190976 171191227 + 2 NA intron (NM_022897, intron 18 of 27) intron (NM_022897, intron 18 of 27) -118147 NM_021025 30012 Hs.249125 NM_021025 ENSG00000164438 TLX3 HOX11L2|RNX T cell leukemia homeobox 3 protein-coding 296-5 chr1 48907135 48907317 + 2 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -130257 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 467 chr1 34343079 34343410 + 2 NA Intergenic Intergenic 166337 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 311-507 chr8 88129778 88130083 + 2 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 197553 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 230-225 chr3 13182563 13182762 + 2 NA Intergenic L1MC|LINE|L1 -109233 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 332-296 chr20 46497915 46498232 + 2 NA Intergenic L2|LINE|L2 15499 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 247-291 chr4 38265027 38265186 + 2 NA Intergenic Intergenic -101808 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 339-267 chr2 102994469 102994725 + 2 NA Intergenic L1MD3|LINE|L1 -10168 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 177-33 chr12 1666193 1666284 + 2 NA Intergenic L1M5|LINE|L1 -5858 NR_037422 100500816 NR_037422 ENSG00000266043 MIR3649 - microRNA 3649 ncRNA 409-284 chr7 49092074 49092446 + 2 NA Intergenic Intergenic 167713 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 430-137 chr2 17017744 17018034 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -352055 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 330-474 chr6 159571708 159571898 + 2 NA Intergenic Intergenic 121438 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 352-52 chr10 66424264 66424518 + 2 NA intron (NM_001127384, intron 11 of 17) L1MEd|LINE|L1 -501645 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 395-184 chr2 154274962 154275209 + 2 NA intron (NM_052917, intron 8 of 12) THE1C-int|LTR|ERVL-MaLR 182353 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 497-260 chr7 34229029 34229382 + 2 NA Intergenic L1MDa|LINE|L1 323666 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 407-131 chr19 58148518 58148762 + 2 NA intron (NM_024620, intron 1 of 3) AluJo|SINE|Alu 2149 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 553-56 chr13 99305001 99305529 + 2 NA intron (NM_004951, intron 1 of 1) intron (NM_004951, intron 1 of 1) 2134 NM_004951 1880 Hs.784 NM_004951 ENSG00000169508 GPR183 EBI2|hEBI2 G protein-coupled receptor 183 protein-coding 463-113 chr17 69805462 69805867 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -156043 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 250-311 chr4 73753836 73754025 + 2 NA Intergenic Intergenic 13361 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 354-190 chr19 23936302 23936566 + 2 NA intron (NM_001348687, intron 3 of 3) intron (NM_001348687, intron 3 of 3) 21519 NR_149007 100505851 Hs.190888 NR_149007 LOC100505851 - uncharacterized LOC100505851 ncRNA 360-58 chr10 127782032 127782267 + 2 NA Intergenic Intergenic 44964 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 343-447 chr5 121549271 121549539 + 2 NA Intergenic Intergenic 226855 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 224-2 chr1 11437263 11437480 + 2 NA Intergenic L2a|LINE|L2 -41784 NM_020780 57540 Hs.202355 NM_020780 ENSG00000204624 DISP3 PTCHD2 dispatched RND transporter family member 3 protein-coding 348-346 chr4 33769013 33769272 + 2 NA Intergenic Intergenic 270751 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 315-379 chr5 54965092 54965354 + 2 NA Intergenic MIR|SINE|MIR 20370 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 240-17 chr1 117792354 117792548 + 2 NA Intergenic Intergenic 137170 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 327-293 chr20 11371880 11372155 + 2 NA Intergenic Intergenic -98634 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 740-7 chr1 207612269 207612910 + 2 NA intron (NM_000573, intron 31 of 38) LTR28C|LTR|ERV1 -32544 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 704-32 chr18 585018 585466 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 4862 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 326-3 chr1 14805293 14805592 + 2 NA intron (NM_201628, intron 1 of 14) MLT1J2|LTR|ERVL-MaLR -118687 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 177-26 chr11 19482764 19482913 + 2 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 24391 NR_049725 100874012 Hs.434602 NR_049725 ENSG00000255043 NAV2-AS5 - NAV2 antisense RNA 5 ncRNA 312-325 chr3 45304433 45304629 + 2 NA Intergenic L1M4b|LINE|L1 -78244 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 443-26 chr1 218765425 218765803 + 2 NA intron (NR_031644, intron 4 of 6) L1ME4a|LINE|L1 152897 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 388-303 chr6 55682903 55683157 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -103816 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 170-147 chr9 81506984 81507118 + 2 NA Intergenic Intergenic 182484 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 356-259 chr2 123659168 123659404 + 2 NA Intergenic LTR7|LTR|ERV1 365888 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 520-56 chr11 103983753 103984203 + 2 NA intron (NM_025208, intron 3 of 6) L1PA13|LINE|L1 -52662 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 391-151 chr19 9566347 9566585 + 2 NA exon (NM_001008727, exon 4 of 4) exon (NM_001008727, exon 4 of 4) 18038 NM_001008727 7675 Hs.501537 NM_001008727 ENSG00000197961 ZNF121 D19S204|ZHC32|ZNF20 zinc finger protein 121 protein-coding 373-28 chr1 177095811 177096062 + 2 NA intron (NM_207108, intron 1 of 21) MLT1A0-int|LTR|ERVL-MaLR -66491 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 268-45 chr10 44925121 44925267 + 2 NA intron (NR_033842, intron 1 of 7) intron (NR_033842, intron 1 of 7) 13857 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 482-283 chr8 129494743 129495109 + 2 NA intron (NR_130917, intron 1 of 3) MLT1D|LTR|ERVL-MaLR -10784 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 512-124 chr2 103699747 103700244 + 2 NA Intergenic L1ME4c|LINE|L1 708337 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 577-94 chr2 115489186 115489674 + 2 NA intron (NM_001321912, intron 4 of 25) MER4D|LTR|ERV1 145615 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 425-86 chr14 66350728 66351086 + 2 NA Intergenic L1MB1|LINE|L1 -135464 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 221-88 chr14 71309867 71310078 + 2 NA Intergenic Intergenic -10504 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 506-150 chr2 100504507 100504879 + 2 NA Intergenic L1PB1|LINE|L1 34211 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 455-266 chr8 36152527 36152930 + 2 NA Intergenic L1MB8|LINE|L1 -442408 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 483-274 chr8 124619036 124619353 + 2 NA intron (NM_001282971, intron 3 of 14) intron (NM_001282971, intron 3 of 14) 80071 NM_005005 4715 Hs.15977 NM_005005 ENSG00000147684 NDUFB9 B22|CI-B22|LYRM3|MC1DN24|UQOR22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 219-302 chr5 173533391 173533605 + 2 NA Intergenic Intergenic -46136 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 257-188 chr2 59680565 59680730 + 2 NA Intergenic L1MEg|LINE|L1 462939 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 278-196 chr2 4205553 4205704 + 2 NA Intergenic LTR50|LTR|ERVL 231467 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 411-80 chr13 39287717 39288056 + 2 NA Intergenic L1PREC2|LINE|L1 249430 NM_001012754 387921 Hs.507783 NM_001012754 ENSG00000188811 NHLRC3 - NHL repeat containing 3 protein-coding 142-57 chr4 189062141 189062242 + 2 NA Intergenic L1M3f|LINE|L1 285534 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 313-29 chr1 213463154 213463333 + 2 NA Intergenic Intergenic 412002 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 304-518 chr8 89517213 89517425 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 240392 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 367-480 chr9 111296651 111296871 + 2 NA Intergenic L1ME4b|LINE|L1 -25547 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 344-458 chr7 53906553 53906750 + 2 NA Intergenic HERVL-int|LTR|ERVL -94720 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 300-362 chr5 58982327 58982523 + 2 NA intron (NM_006203, intron 11 of 14) ERVL-int|LTR|ERVL 17473 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 572-86 chr2 73763975 73764470 + 2 NA intron (NM_003584, intron 8 of 8) L1ME4c|LINE|L1 15935 NM_003584 8446 Hs.14611 NM_003584 ENSG00000144048 DUSP11 PIR1 dual specificity phosphatase 11 protein-coding 349-390 chr4 153903751 153903983 + 2 NA Intergenic Intergenic -114784 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 303-167 chr17 61093480 61093683 + 2 NA intron (NM_001330413, intron 23 of 25) AluJb|SINE|Alu 274123 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 285-291 chr3 181088054 181088294 + 2 NA intron (NR_075091, intron 1 of 7) L2a|LINE|L2 31494 NR_075092 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 268-97 chr12 89152319 89152488 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -132711 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 340-512 chr7 83568815 83569005 + 2 NA intron (NM_012431, intron 1 of 16) L1M2|LINE|L1 72521 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 676-37 chr15 27146554 27147193 + 2 NA intron (NM_001270873, intron 3 of 5) L1M4|LINE|L1 14446 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 178-135 chr7 64703206 64703327 + 2 NA intron (NM_016220, intron 6 of 6) intron (NM_016220, intron 6 of 6) 24202 NR_106898 102465505 NR_106898 ENSG00000275667 MIR6839 hsa-mir-6839 microRNA 6839 ncRNA 338-333 chr3 54604025 54604344 + 2 NA intron (NM_018398, intron 9 of 37) intron (NM_018398, intron 9 of 37) 35673 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 340-28 chr1 183214932 183215108 + 2 NA intron (NM_005562, intron 2 of 22) intron (NM_005562, intron 2 of 22) 28756 NM_018891 3918 Hs.591484 NM_005562 ENSG00000058085 LAMC2 B2T|BM600|CSF|EBR2|EBR2A|LAMB2T|LAMNB2 laminin subunit gamma 2 protein-coding 395-326 chr8 3779539 3779817 + 2 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) -1051227 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 290-421 chr7 52314690 52314864 + 2 NA Intergenic MER110-int|LTR|ERV1 -720856 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 366-356 chr5 153456441 153456790 + 2 NA Intergenic LTR78|LTR|ERV1 -33909 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 307-486 chr8 99752132 99752431 + 2 NA intron (NM_017890, intron 39 of 61) LTR40b|LTR|ERVL 141426 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 518-164 chr21 25142584 25143085 + 2 NA Intergenic Intergenic 288867 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 372-178 chr16 78533398 78533642 + 2 NA intron (NM_001291997, intron 7 of 7) MER30|DNA|hAT-Charlie 433866 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 455-193 chr4 129010528 129010844 + 2 NA intron (NM_144643, intron 5 of 20) L1PA13|LINE|L1 82853 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 364-376 chr6 35547261 35547576 + 2 NA Intergenic Intergenic -34522 NM_003322 7287 Hs.485208 NM_003322 ENSG00000112041 TULP1 LCA15|RP14|TUBL1 TUB like protein 1 protein-coding 299-319 chr4 56077205 56077473 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -92856 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 338-31 chr1 214073499 214073685 + 2 NA Intergenic Intergenic 85059 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 280-437 chr9 68713904 68714178 + 2 NA intron (NM_001278253, intron 1 of 13) MIRb|SINE|MIR 8627 NM_001278253 8395 Hs.534371 NM_003558 ENSG00000107242 PIP5K1B MSS4|STM7 phosphatidylinositol-4-phosphate 5-kinase type 1 beta protein-coding 379-179 chr2 210919986 210920243 + 2 NA Intergenic Intergenic 302543 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 228-308 chr7 9708054 9708216 + 2 NA Intergenic Intergenic 73865 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 338-38 chr1 235603096 235603308 + 2 NA intron (NM_001098721, intron 1 of 3) AluSx1|SINE|Alu 46582 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 167-95 chr5 84824508 84824633 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -439690 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 195-25 chr10 65907747 65907889 + 2 NA Intergenic Intergenic 336393 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 378-453 chr9 81371216 81371464 + 2 NA Intergenic Intergenic 318195 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 354-125 chr13 104614658 104614883 + 2 NA Intergenic Intergenic -851097 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 798-48 chr5 39359922 39360466 + 2 NA intron (NM_001737, intron 1 of 10) MIR|SINE|MIR 4301 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 379-256 chr5 4769795 4770109 + 2 NA Intergenic Intergenic -3529 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 331-566 chrX 45461123 45461413 + 2 NA Intergenic L1PA17|LINE|L1 -44120 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 422-269 chr6 139860718 139861023 + 2 NA TTS (NR_038399) TTS (NR_038399) 6020 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 488-135 chr2 63905325 63905743 + 2 NA intron (NM_001005739, intron 20 of 22) L1ME1|LINE|L1 63654 NM_006759 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 395-17 chr1 182464982 182465344 + 2 NA intron (NM_001137669, intron 4 of 21) L1PA4|LINE|L1 15017 NM_001137669 353299 Hs.121200 NM_032267 ENSG00000121446 RGSL1 RGSL|RGSL2 regulator of G protein signaling like 1 protein-coding 306-259 chr2 192169204 192169368 + 2 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 25647 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 114-39 chr3 67997669 67997778 + 2 NA intron (NM_001252216, intron 1 of 4) intron (NM_001252216, intron 1 of 4) 6131 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 489-215 chr5 154176523 154176986 + 2 NA Intergenic L1M3f|LINE|L1 -13979 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 238-108 chr14 86458709 86458913 + 2 NA Intergenic Intergenic -446967 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 287-443 chr9 93844075 93844299 + 2 NA Intergenic L1MA4|LINE|L1 24830 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 441-246 chr7 40212807 40213198 + 2 NA intron (NM_024728, intron 6 of 14) L1MA9|LINE|L1 78026 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 326-305 chr21 16807413 16807640 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 217289 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 292-317 chr4 61003439 61003722 + 2 NA Intergenic L1MB1|LINE|L1 80961 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 410-42 chr10 106252484 106252846 + 2 NA Intergenic Intergenic 112500 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 398-224 chr3 169675853 169676164 + 2 NA Intergenic Intergenic -12296 NM_001366466 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 284-273 chr3 186671215 186671481 + 2 NA intron (NM_000412, intron 3 of 6) (TATATAA)n|Simple_repeat|Simple_repeat 5396 NM_000412 3273 Hs.1498 NM_000412 ENSG00000113905 HRG HPRG|HRGP|THPH11 histidine rich glycoprotein protein-coding 288-50 chr10 56761684 56761888 + 2 NA Intergenic LTR1A2|LTR|ERV1 -400513 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 271-20 chr1 173634286 173634489 + 2 NA promoter-TSS (NM_001195190) promoter-TSS (NM_001195190) -951 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 462-268 chr7 71198680 71199017 + 2 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) 66704 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 488-121 chr19 51133761 51134116 + 2 NA intron (NM_001198558, intron 6 of 6) L1ME2|LINE|L1 -8363 NM_014385 27036 Hs.655393 NM_014385 ENSG00000168995 SIGLEC7 AIRM1|CD328|CDw328|D-siglec|QA79|SIGLEC-7|SIGLEC19P|SIGLECP2|p75|p75/AIRM1 sialic acid binding Ig like lectin 7 protein-coding 422-71 chr13 106146603 106146870 + 2 NA Intergenic Intergenic -229828 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 465-124 chr2 17612342 17612583 + 2 NA intron (NM_001366805, intron 2 of 2) intron (NM_001366805, intron 2 of 2) 71766 NM_001366804 7447 Hs.444212 NM_003385 ENSG00000163032 VSNL1 HLP3|HPCAL3|HUVISL1|VILIP|VILIP-1 visinin like 1 protein-coding 268-40 chr10 37474301 37474488 + 2 NA Intergenic L1ME4a|LINE|L1 128537 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 526-27 chr10 117054017 117054361 + 2 NA intron (NM_001258300, intron 1 of 17) MER4D|LTR|ERV1 -48612 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 333-6 chr1 34565609 34565909 + 2 NA Intergenic Intergenic 103935 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 455-75 chr14 86102292 86102658 + 2 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 167797 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 392-273 chr6 40352380 40352731 + 2 NA intron (NR_038887, intron 1 of 2) intron (NR_038887, intron 1 of 2) 3451 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 372-220 chr2 44985511 44985847 + 2 NA Intergenic AluSx|SINE|Alu 23773 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 514-122 chr18 4202575 4203017 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -61806 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 250-155 chr17 9419179 9419411 + 2 NA intron (NM_004853, intron 6 of 7) FLAM_A|SINE|Alu 156525 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 318-190 chr16 884996 885165 + 2 NA intron (NR_147885, intron 5 of 11) L1MEc|LINE|L1 -35953 NR_110945 101929387 Hs.737087 NR_110945 ENSG00000260439 LMF1-AS1 LA16c-366D3.1 LMF1 antisense RNA 1 ncRNA 248-158 chr18 45605274 45605426 + 2 NA intron (NM_001371319, intron 5 of 23) Charlie7|DNA|hAT-Charlie -10126 NM_007163 8170 Hs.710927 NM_007163 ENSG00000132874 SLC14A2 HUT2|UT-A2|UT2|UTA|UTR|hUT-A6 solute carrier family 14 member 2 protein-coding 421-327 chrX 63009505 63009756 + 2 NA Intergenic L1P4|LINE|L1 341702 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 286-431 chr7 82846565 82846758 + 2 NA intron (NM_033026, intron 11 of 24) intron (NM_033026, intron 11 of 24) 316223 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 223-11 chr1 83046557 83046717 + 2 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -60429 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 336-73 chr10 90447665 90447890 + 2 NA intron (NR_110657, intron 3 of 6) L1ME1|LINE|L1 93028 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 380-376 chr7 126684266 126684477 + 2 NA intron (NM_001371085, intron 7 of 10) intron (NM_001371085, intron 7 of 10) 373813 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 427-37 chr11 6158426 6158742 + 2 NA Intergenic AluSx|SINE|Alu 11742 NM_001004052 255725 Hs.690457 NM_001004052 ENSG00000255307 OR52B2 OR11-70 olfactory receptor family 52 subfamily B member 2 protein-coding 247-431 chr9 79653768 79653923 + 2 NA intron (NM_001351563, intron 6 of 17) intron (NM_001351563, intron 6 of 17) 80668 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 374-335 chr6 41419820 41420162 + 2 NA Intergenic Intergenic -82453 NR_120347 103106903 Hs.563396 NR_120347 ENSG00000226917 LINC01276 - long intergenic non-protein coding RNA 1276 ncRNA 408-27 chr1 192827854 192828098 + 2 NA Intergenic Intergenic 18937 NM_002923 5997 Hs.78944 NM_002923 ENSG00000116741 RGS2 G0S8 regulator of G protein signaling 2 protein-coding 251-433 chrX 125745122 125745332 + 2 NA Intergenic L1MDa|LINE|L1 -364535 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 355-335 chr3 135414194 135414503 + 2 NA Intergenic L1ME4a|LINE|L1 -551380 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 545-159 chr4 47172999 47173325 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 141595 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 121 chr1 42523587 42523689 + 2 NA intron (NM_001355227, intron 6 of 18) L1MB3|LINE|L1 -9382 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 342-144 chr14 67382600 67382842 + 2 NA intron (NM_004094, intron 7 of 7) intron (NM_004094, intron 7 of 7) 22393 NM_004094 1965 Hs.151777 NM_004094 ENSG00000134001 EIF2S1 EIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A eukaryotic translation initiation factor 2 subunit alpha protein-coding 709-28 chr17 53913168 53913582 + 2 NA Intergenic Intergenic 90448 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 180-97 chr21 19668851 19669001 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 230829 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 536-88 chr16 60638117 60638501 + 2 NA Intergenic Intergenic -278516 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 349-405 chr5 17867620 17867907 + 2 NA intron (NR_134286, intron 4 of 7) L1M1|LINE|L1 60489 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 250-301 chr4 32780296 32780476 + 2 NA Intergenic Intergenic 429348 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 368-97 chr12 15463616 15463831 + 2 NA intron (NM_030667, intron 1 of 26) intron (NM_030667, intron 1 of 26) -82888 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 317-407 chr6 16913272 16913527 + 2 NA Intergenic L1MEc|LINE|L1 -151909 NM_000332 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 543-161 chr21 30387716 30388165 + 2 NA Intergenic Intergenic -8091 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 302-495 chrX 56842215 56842510 + 2 NA Intergenic L1M4|LINE|L1 -104778 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 225-255 chr4 159313625 159313761 + 2 NA intron (NM_001351727, intron 2 of 24) intron (NM_001351727, intron 2 of 24) 45884 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 507-48 chr11 28753349 28753830 + 2 NA Intergenic Intergenic -276041 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 346-166 chr15 96648949 96649128 + 2 NA Intergenic Intergenic 132616 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 619-141 chrX 83309794 83310202 + 2 NA Intergenic L1MA2|LINE|L1 -198292 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 252-348 chr5 120551134 120551294 + 2 NA intron (NM_001308088, intron 1 of 3) L1MA9|LINE|L1 19750 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 278-339 chr5 58300560 58300830 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 159391 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 707-97 chr7 62774517 62775056 + 2 NA Intergenic ALR/Alpha|Satellite|centr 529270 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 631-104 chr5 113663013 113663392 + 2 NA Intergenic Intergenic 149508 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 506-65 chr12 40758393 40758734 + 2 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 66121 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 337-370 chr3 149027814 149028037 + 2 NA TTS (NM_001184721) TTS (NM_001184721) 36517 NM_001184721 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 437-204 chr4 184417346 184417740 + 2 NA intron (NM_002199, intron 5 of 8) intron (NM_002199, intron 5 of 8) -35237 NR_125934 102723766 Hs.432281 NR_125933 ENSG00000249096 LINC02362 - long intergenic non-protein coding RNA 2362 ncRNA 292-234 chr2 157757232 157757517 + 2 NA intron (NM_001111067, intron 9 of 10) L1M2|LINE|L1 81256 NM_001347667 90 Hs.470316 NM_001105 ENSG00000115170 ACVR1 ACTRI|ACVR1A|ACVRLK2|ALK2|FOP|SKR1|TSRI activin A receptor type 1 protein-coding 307-500 chr8 141093079 141093325 + 2 NA Intergenic HAL1M8|LINE|L1 -35387 NR_148197 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 351-465 chr8 26102811 26102989 + 2 NA Intergenic L1MB4|LINE|L1 -57487 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 420-67 chr12 73654604 73654933 + 2 NA Intergenic AluJr|SINE|Alu 495578 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 369-443 chr9 74836181 74836378 + 2 NA intron (NM_017662, intron 5 of 38) intron (NM_017662, intron 5 of 38) 51068 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 398-164 chr2 78645583 78645888 + 2 NA Intergenic Intergenic 100204 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 360-81 chr12 16141588 16141827 + 2 NA Intergenic Intergenic 135978 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 149-68 chr3 69467667 69467786 + 2 NA Intergenic Intergenic -81638 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 339-41 chr1 217806979 217807158 + 2 NA intron (NM_138796, intron 9 of 10) L1PA17|LINE|L1 -21948 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 392-312 chr7 126255402 126255629 + 2 NA Intergenic L1MA4|LINE|L1 802669 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 458-204 chr5 83417563 83417961 + 2 NA Intergenic MIR3|SINE|MIR -53912 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 257-377 chr7 27444658 27444882 + 2 NA Intergenic L1MA3|LINE|L1 -171204 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 220-355 chr8 9943307 9943461 + 2 NA Intergenic Intergenic -39912 NR_029668 406907 NR_029668 ENSG00000284321 MIR124-1 MIR124A|MIR124A1|MIRN124-1|MIRN124A1|mir-124-1 microRNA 124-1 ncRNA 144-20 chr12 9934058 9934136 + 2 NA Intergenic Intergenic -1727 NM_001130711 387836 Hs.527665 NM_207375 ENSG00000188393 CLEC2A INPE5792|KACL|PILAR|UNQ5792 C-type lectin domain family 2 member A protein-coding 210-18 chr1 177235877 177236063 + 2 NA intron (NM_021165, intron 2 of 7) intron (NM_021165, intron 2 of 7) 65012 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 284-237 chr20 55588092 55588321 + 2 NA Intergenic Intergenic -161009 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 410-29 chr10 23713420 23713676 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 18821 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 374-326 chr5 155022994 155023203 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 9343 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 286-416 chr7 43317408 43317590 + 2 NA intron (NM_001287059, intron 3 of 27) LTR67B|LTR|ERVL 166604 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 437-21 chr10 44872254 44872625 + 2 NA intron (NR_033842, intron 2 of 7) MIRb|SINE|MIR -38877 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 208-206 chr5 30335872 30336046 + 2 NA Intergenic Intergenic 455399 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 518-5 chr1 107465518 107465873 + 2 NA intron (NM_001113226, intron 6 of 6) MIRb|SINE|MIR 222804 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 325-436 chr5 37112572 37112784 + 2 NA intron (NM_023073, intron 50 of 51) intron (NM_023073, intron 50 of 51) -136368 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 257-330 chr5 111667247 111667405 + 2 NA intron (NR_040093, intron 1 of 6) L2b|LINE|L2 88925 NM_001142483 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 173-91 chr3 88698302 88698411 + 2 NA Intergenic L1MEc|LINE|L1 359900 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 358-333 chr4 62582483 62582764 + 2 NA Intergenic Intergenic -420858 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 352-197 chr18 64552176 64552433 + 2 NA Intergenic Intergenic -292249 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 513-193 chr3 175047481 175047931 + 2 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 67536 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 565-173 chr7 120321175 120321542 + 2 NA intron (NM_012281, intron 1 of 5) FLAM_C|SINE|Alu 48183 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 216-339 chr8 112840768 112840921 + 2 NA intron (NM_001363185, intron 9 of 66) intron (NM_001363185, intron 9 of 66) 197351 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 391-271 chr4 148122391 148122742 + 2 NA intron (NR_148974, intron 4 of 6) L1MEi|LINE|L1 319848 NR_148974 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 298-447 chr8 23602946 23603207 + 2 NA Intergenic L2|LINE|L2 74120 NM_001317814 51312 Hs.596025 NM_016612 ENSG00000147454 SLC25A37 HT015|MFRN|MFRN1|MSC|MSCP|PRO1278|PRO1584|PRO2217 solute carrier family 25 member 37 protein-coding 331-322 chr21 18751149 18751332 + 2 NA intron (NR_109925, intron 1 of 3) MER4A1|LTR|ERV1 8572 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 329-85 chr10 122915121 122915384 + 2 NA Intergenic Intergenic 4642 NM_001029888 118670 Hs.369829 NM_001029888 ENSG00000203795 FAM24A - family with sequence similarity 24 member A protein-coding 614-25 chr12 39149176 39149673 + 2 NA Intergenic L1MA2|LINE|L1 -243833 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 274-33 chr10 19743809 19744057 + 2 NA Intergenic L1ME3A|LINE|L1 -15383 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 530-70 chr14 45664146 45664594 + 2 NA Intergenic L1PA14|LINE|L1 51232 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 276-64 chr10 84983131 84983325 + 2 NA Intergenic Intergenic 215677 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 348-96 chr11 104760498 104760764 + 2 NA Intergenic L1M2|LINE|L1 138039 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 170-112 chr5 8431513 8431645 + 2 NA intron (NR_039984, intron 2 of 5) MER90|LTR|ERV1 25985 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 328-50 chr10 39149216 39149465 + 2 NA Intergenic ALR/Alpha|Satellite|centr 452744 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 289-359 chr5 8972162 8972357 + 2 NA Intergenic L1MA4A|LINE|L1 81636 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 384-94 chr13 53462724 53463090 + 2 NA Intergenic Intergenic -311007 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 317-145 chr14 55535655 55535813 + 2 NA Intergenic Intergenic 44358 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 262-188 chr19 53243908 53244062 + 2 NA intron (NM_001317998, intron 3 of 4) intron (NM_001317998, intron 3 of 4) 10865 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 334-368 chr3 174204156 174204339 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -283451 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 281-124 chr14 67326250 67326475 + 2 NA intron (NM_001256550, intron 14 of 14) intron (NM_001256550, intron 14 of 14) 33442 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 313-233 chr2 15060900 15061122 + 2 NA Intergenic MamRep564|Unknown|Unknown 428294 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 515-239 chr6 106928011 106928390 + 2 NA Intergenic Intergenic 45839 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 352-486 chr7 25912933 25913133 + 2 NA Intergenic Intergenic 36953 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 406-291 chr8 32657012 32657344 + 2 NA intron (NM_001322205, intron 1 of 8) intron (NM_001322205, intron 1 of 8) 10089 NM_001322206 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 346-506 chr8 132178473 132178654 + 2 NA intron (NM_001204824, intron 4 of 14) MIRb|SINE|MIR -73298 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 409-18 chr10 8978525 8978761 + 2 NA Intergenic Intergenic 80654 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 318-315 chr20 21485131 21485322 + 2 NA Intergenic L1MB5|LINE|L1 28838 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 206-51 chr11 114763352 114763527 + 2 NA Intergenic Charlie19a|DNA|hAT-Charlie 84912 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 538-72 chr14 85604060 85604481 + 2 NA intron (NM_001346143, intron 1 of 1) intron (NM_001346143, intron 1 of 1) 70921 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 285-23 chr1 233754565 233754727 + 2 NA Intergenic L1ME2z|LINE|L1 130494 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 597-16 chr1 221412600 221413042 + 2 NA Intergenic Intergenic -76525 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 354-137 chr14 56879804 56880140 + 2 NA intron (NR_146411, intron 2 of 2) L2a|LINE|L2 66814 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 206-168 chr3 96563658 96563811 + 2 NA Intergenic Intergenic 203770 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 260-339 chr5 24025745 24025991 + 2 NA intron (NR_131245, intron 4 of 4) L1PB1|LINE|L1 74520 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 398-38 chr10 56818745 56819043 + 2 NA Intergenic Intergenic -457621 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 199-110 chr2 55291950 55292107 + 2 NA intron (NM_001254943, intron 32 of 33) intron (NM_001254943, intron 32 of 33) 9709 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 395-9 chr1 78212705 78213004 + 2 NA Intergenic L1PA13|LINE|L1 -16745 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 220-120 chr15 83043849 83044006 + 2 NA intron (NM_001011885, intron 3 of 6) Tigger15a|DNA|TcMar-Tigger 23325 NM_025238 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 402-260 chr5 20054296 20054542 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -66219 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 381-194 chr2 64554118 64554365 + 2 NA intron (NM_001002243, intron 2 of 8) intron (NM_001002243, intron 2 of 8) 28728 NR_039633 100616419 NR_039633 ENSG00000283204 MIR4434 - microRNA 4434 ncRNA 319-250 chr2 82450219 82450409 + 2 NA Intergenic L1MA2|LINE|L1 -406489 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 233-300 chr5 58836836 58836969 + 2 NA intron (NM_138453, intron 4 of 4) L1MA5A|LINE|L1 162996 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 346-103 chr12 38432877 38433138 + 2 NA Intergenic Intergenic 116233 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 236-375 chr9 14515428 14515647 + 2 NA intron (NM_001369458, intron 1 of 11) MER5A|DNA|hAT-Charlie 16540 NM_001369468 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 199-173 chr4 380200 380348 + 2 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 30117 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 517-169 chr22 26213161 26213429 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 43821 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 241-344 chr6 149239952 149240147 + 2 NA intron (NM_001292035, intron 2 of 6) intron (NM_001292035, intron 2 of 6) 17502 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 310-508 chr8 48416288 48416551 + 2 NA Intergenic L1MB5|LINE|L1 -135148 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 723-44 chr2 196017932 196018394 + 2 NA intron (NM_018897, intron 9 of 64) L1M5|LINE|L1 50674 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 364-55 chr10 44413687 44414046 + 2 NA Intergenic L1PA15|LINE|L1 -28769 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 363-216 chr2 89806639 89806909 + 2 NA Intergenic Intergenic -168867 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 251-295 chr5 31620999 31621126 + 2 NA Intergenic AluSq2|SINE|Alu -18069 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 428-193 chr3 143962961 143963246 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -8695 NM_173552 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 280-384 chr7 54999309 54999539 + 2 NA Intergenic Intergenic -19593 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 194-38 chr12 12855439 12855587 + 2 NA Intergenic L1MC4|LINE|L1 -19964 NR_003932 387841 Hs.631728 NR_003932 ENSG00000234498 RPL13AP20 RPL13A_9_1211 ribosomal protein L13a pseudogene 20 pseudo 263-112 chr14 66318171 66318341 + 2 NA Intergenic L1MA5|LINE|L1 -168115 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 339-339 chr22 34978868 34979186 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 18889 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 238-377 chr8 59115134 59115343 + 2 NA intron (NM_014729, intron 1 of 8) intron (NM_014729, intron 1 of 8) 3909 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 329-169 chr14 83935889 83936082 + 2 NA Intergenic AluJr|SINE|Alu 1293353 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 285-408 chr8 76642835 76643018 + 2 NA intron (NR_024360, intron 2 of 3) L1PA13|LINE|L1 -38321 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 385-109 chr15 27070032 27070236 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 91185 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 219-266 chr4 170813376 170813554 + 2 NA Intergenic Intergenic -69730 NR_134683 100506107 Hs.380602 NR_134683 ENSG00000250968 LINC02382 - long intergenic non-protein coding RNA 2382 ncRNA 268-74 chr11 132300019 132300239 + 2 NA intron (NM_016522, intron 3 of 6) intron (NM_016522, intron 3 of 6) 15827 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 281-232 chr2 148258784 148259052 + 2 NA intron (NM_018328, intron 4 of 14) HERVL18-int|LTR|ERVL -237314 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 401-2 chr1 36678636 36678964 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -195486 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 299-329 chr4 77131002 77131166 + 2 NA Intergenic L1MA2|LINE|L1 -26123 NM_004354 901 Hs.740456 NM_004354 ENSG00000138764 CCNG2 - cyclin G2 protein-coding 429-32 chr10 35721609 35721936 + 2 NA Intergenic AluSz|SINE|Alu -56530 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 353-122 chr12 126136790 126136969 + 2 NA Intergenic L1PA15|LINE|L1 40887 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 218-34 chr10 108581143 108581303 + 2 NA Intergenic Intergenic -511930 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 331-311 chr20 12729816 12730040 + 2 NA Intergenic Intergenic 207035 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 175-8 chr1 106219180 106219325 + 2 NA Intergenic Intergenic -190999 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 314-235 chr18 8299241 8299511 + 2 NA intron (NM_002845, intron 18 of 30) AluSx|SINE|Alu 67658 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 330-140 chr13 61614743 61615052 + 2 NA Intergenic L1ME3A|LINE|L1 -186951 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 252-278 chr3 139052271 139052505 + 2 NA Intergenic L1M2|LINE|L1 -7496 NM_001134657 389152 Hs.531377 NM_001004315 ENSG00000233701 PRR23C - proline rich 23C protein-coding 326-407 chr5 51421985 51422148 + 2 NA Intergenic Intergenic 38618 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 408-183 chr20 6825088 6825394 + 2 NA Intergenic L2a|LINE|L2 57555 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 344-456 chr7 44627860 44628121 + 2 NA intron (NM_002541, intron 2 of 22) L1MC5a|LINE|L1 21363 NM_002541 4967 Hs.488181 NM_002541 ENSG00000105953 OGDH AKGDH|E1k|OGDC oxoglutarate dehydrogenase protein-coding 448-225 chr5 146789933 146790358 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 88640 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 458-27 chr10 90513987 90514322 + 2 NA intron (NR_110657, intron 2 of 6) intron (NR_110657, intron 2 of 6) 26651 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 599-101 chr4 129547346 129547789 + 2 NA Intergenic L1M2|LINE|L1 223911 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 329-182 chr15 45264204 45264407 + 2 NA intron (NM_004212, intron 6 of 17) Charlie9|DNA|hAT-Charlie 12071 NM_004212 9153 Hs.367833 NM_004212 ENSG00000137860 SLC28A2 CNT2|HCNT2|HsT17153|SPNT1 solute carrier family 28 member 2 protein-coding 188-103 chr2 118743321 118743475 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 104785 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 307-287 chr22 45796901 45797123 + 2 NA intron (NM_013236, intron 9 of 11) L1ME1|LINE|L1 36488 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 330-205 chr17 33784555 33784751 + 2 NA intron (NM_001094, intron 1 of 9) MER33|DNA|hAT-Charlie -250893 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 247-126 chr15 51318279 51318436 + 2 NA intron (NM_000103, intron 1 of 9) intron (NM_000103, intron 1 of 9) 140 NM_001347249 1588 Hs.260074 NM_000103 ENSG00000137869 CYP19A1 ARO|ARO1|CPV1|CYAR|CYP19|CYPXIX|P-450AROM cytochrome P450 family 19 subfamily A member 1 protein-coding 450-136 chr2 47100846 47101200 + 2 NA intron (NM_001163561, intron 5 of 6) HERV9NC-int|LTR|ERV1 54285 NM_001163561 285051 Hs.531575 NM_173649 ENSG00000239605 STPG4 C2orf61|GSE sperm-tail PG-rich repeat containing 4 protein-coding 404-321 chr8 99017134 99017389 + 2 NA intron (NR_047582, intron 2 of 8) L1ME3|LINE|L1 3995 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 390-125 chr16 23721970 23722356 + 2 NA Intergenic L1PA13|LINE|L1 -8941 NM_033266 10595 Hs.592041 NM_033266 ENSG00000134398 ERN2 IRE1-BETA|IRE1b|IRE2p|hIRE2p endoplasmic reticulum to nucleus signaling 2 protein-coding 385-67 chr12 58570907 58571136 + 2 NA intron (NR_120452, intron 4 of 7) L1ME4b|LINE|L1 -20681 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 326-36 chr1 178876684 178876924 + 2 NA intron (NM_152663, intron 8 of 19) intron (NM_152663, intron 8 of 19) -5727 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 418-150 chr3 17594464 17594688 + 2 NA intron (NM_001349088, intron 2 of 21) HERVL-int|LTR|ERVL 105444 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 611-142 chr7 123325967 123326456 + 2 NA Intergenic Intergenic -126240 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 316-438 chr5 45976719 45976930 + 2 NA Intergenic ALR/Alpha|Satellite|centr -280444 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 392-19 chr1 248224803 248225090 + 2 NA Intergenic AluSq2|SINE|Alu -13983 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 226-153 chr2 19651457 19651640 + 2 NA Intergenic Intergenic -217306 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 397-142 chr2 21693218 21693526 + 2 NA intron (NR_038837, intron 2 of 2) MER113|DNA|hAT-Charlie 17280 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 249-402 chr8 24859790 24859987 + 2 NA Intergenic L1MC4|LINE|L1 -53873 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 424-78 chr15 33434430 33434792 + 2 NA intron (NM_001243996, intron 1 of 102) L1ME3E|LINE|L1 123644 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 427-160 chr3 95325071 95325342 + 2 NA Intergenic L1PB3|LINE|L1 357987 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 434-122 chr18 47921539 47921909 + 2 NA intron (NM_001003652, intron 1 of 10) intron (NM_001003652, intron 1 of 10) 8935 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 451-206 chr6 165005199 165005510 + 2 NA Intergenic L1MCc|LINE|L1 -183291 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 385-365 chr7 114349258 114349483 + 2 NA intron (NR_033766, intron 2 of 19) MIR|SINE|MIR -65445 NR_033767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 425-155 chr2 193531703 193532048 + 2 NA Intergenic Intergenic 782030 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 590-144 chr6 66563399 66563842 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 775741 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 342-275 chr20 4326492 4326778 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -77348 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 203-240 chr8 134969642 134969815 + 2 NA Intergenic AluJb|SINE|Alu 119793 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 325-50 chr10 14251668 14251938 + 2 NA intron (NR_134578, intron 2 of 3) MIR|SINE|MIR 79081 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 601-3 chr1 59243949 59244384 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -52647 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 156-70 chr4 35586571 35586700 + 2 NA Intergenic L1MEf|LINE|L1 657304 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 637-60 chr2 56198340 56198825 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -12812 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 358-135 chr15 58759273 58759595 + 2 NA Intergenic Intergenic -9727 NM_001320570 102 Hs.172028 NM_001110 ENSG00000137845 ADAM10 AD10|AD18|CD156c|CDw156|HsT18717|MADM|RAK|kuz ADAM metallopeptidase domain 10 protein-coding 348-388 chr5 6102934 6103247 + 2 NA Intergenic Intergenic 234202 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 414-87 chr14 71652195 71652559 + 2 NA intron (NM_001354286, intron 9 of 24) intron (NM_001354286, intron 9 of 24) 66079 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 385-54 chr11 81820613 81820862 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 70099 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 388-350 chr8 115617242 115617617 + 2 NA intron (NM_001282902, intron 2 of 5) intron (NM_001282902, intron 2 of 5) 50584 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 434-245 chr6 52036930 52037169 + 2 NA intron (NM_138694, intron 27 of 66) intron (NM_138694, intron 27 of 66) 50564 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 393-173 chr2 148231334 148231639 + 2 NA intron (NM_018328, intron 3 of 14) L1PA4|LINE|L1 -209882 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 280-438 chr9 75776232 75776450 + 2 NA Intergenic L1MA3|LINE|L1 -114303 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 238-350 chr7 17438643 17438804 + 2 NA intron (NR_110015, intron 1 of 2) MER103C|DNA|hAT-Charlie 63806 NR_110015 102659288 Hs.559488 NR_110014 KCCAT333 - renal clear cell carcinoma-associated transcript 333 ncRNA 215-236 chr4 102089297 102089450 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 234939 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 191-63 chr15 94652839 94652989 + 2 NA Intergenic MIRb|SINE|MIR -202449 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 360-22 chr1 238177561 238177903 + 2 NA Intergenic MER84-int|LTR|ERV1 -286810 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 517-179 chr3 114168975 114169298 + 2 NA intron (NM_000796, intron 2 of 6) intron (NM_000796, intron 2 of 6) 9640 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 556-77 chr17 11725595 11725941 + 2 NA intron (NM_001372, intron 27 of 68) AluSz|SINE|Alu 127298 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 288-427 chr8 8592378 8592594 + 2 NA Intergenic L2c|LINE|L2 -109451 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 374-322 chr5 124404824 124405123 + 2 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 33547 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 192-217 chr8 144926138 144926317 + 2 NA Intergenic L1M5|LINE|L1 -24050 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 394-58 chr11 28805603 28805989 + 2 NA Intergenic L2c|LINE|L2 -328248 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 789-49 chr8 125143186 125143888 + 2 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 51677 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 241-356 chr7 9384063 9384249 + 2 NA Intergenic L1M2|LINE|L1 -250114 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 417-206 chr4 148524415 148524711 + 2 NA Intergenic Intergenic -79865 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 354-448 chr8 9400054 9400285 + 2 NA Intergenic L1MB3|LINE|L1 75118 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 329-488 chr6 40561690 40561892 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 25573 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 441-202 chr5 67794905 67795210 + 2 NA intron (NR_130779, intron 1 of 2) MLT-int|LTR|ERVL-MaLR 1844 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 555-221 chrX 91085207 91085586 + 2 NA Intergenic Intergenic -349443 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 350-368 chr4 151903170 151903388 + 2 NA Intergenic L1M3de|LINE|L1 -142256 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 590-67 chr18 69762329 69762827 + 2 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 185295 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 389-181 chr2 121823574 121823870 + 2 NA Intergenic Intergenic 68071 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 344-244 chr2 89783563 89783871 + 2 NA Intergenic Intergenic -145810 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 568-88 chr18 69172673 69173175 + 2 NA Intergenic L1PA16|LINE|L1 -227964 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 294-221 chr2 81228165 81228392 + 2 NA Intergenic L1MC|LINE|L1 238668 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 301-38 chr10 42385037 42385298 + 2 NA Intergenic HERVFH19-int|LTR|ERV1 -17122 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 150-24 chr11 110052770 110052856 + 2 NA Intergenic L1ME2|LINE|L1 -40579 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 212-182 chr2 236896560 236896714 + 2 NA Intergenic L1ME4a|LINE|L1 159530 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 141-64 chr4 30997153 30997264 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -173936 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 395-53 chr11 37704974 37705362 + 2 NA Intergenic Intergenic -233433 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 272-272 chr3 88719875 88720088 + 2 NA Intergenic Intergenic 381525 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 818-34 chr22 26766021 26766524 + 2 NA intron (NR_110543, intron 2 of 5) LTR16A|LTR|ERVL 93429 NR_110543 102724827 Hs.642767 NR_110543 MIATNB - MIAT neighbor ncRNA 392-74 chr12 129555045 129555272 + 2 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 346557 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 206-291 chrX 47429042 47429175 + 2 NA Intergenic Intergenic 38561 NM_001324156 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 317-225 chr2 57958175 57958438 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) 50655 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 177-105 chr3 147209181 147209307 + 2 NA Intergenic Intergenic 183186 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 390-212 chr20 43311566 43311780 + 2 NA Intergenic Intergenic -121767 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 257-196 chr2 83207327 83207553 + 2 NA Intergenic Intergenic -315374 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 285-139 chr16 7573873 7574124 + 2 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 241153 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 445-234 chr6 62580450 62580724 + 2 NA Intergenic Intergenic -294360 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 459-153 chr2 180290169 180290563 + 2 NA Intergenic Intergenic -283069 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 247-360 chr6 51594472 51594711 + 2 NA Intergenic L1MA9|LINE|L1 -27279 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 307-191 chr17 68843695 68843971 + 2 NA Intergenic Intergenic 111559 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 246-311 chr5 6024169 6024403 + 2 NA Intergenic Intergenic 313006 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 294-119 chr14 62801840 62802020 + 2 NA intron (NM_139318, intron 9 of 10) MIR3|SINE|MIR 243528 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 469-119 chr18 78700831 78701254 + 2 NA Intergenic MIRb|SINE|MIR -279233 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 1178-2 chr12 130551101 130551891 + 2 NA intron (NM_001351226, intron 2 of 21) L1M5|LINE|L1 76960 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 296-203 chr19 16129072 16129274 + 2 NA intron (NM_005370, intron 6 of 7) MIRc|SINE|MIR -4855 NR_163150 84941 Hs.631617 NM_032855 ENSG00000196684 HSH2D ALX|HSH2 hematopoietic SH2 domain containing protein-coding 548-5 chr1 83506160 83506550 + 2 NA Intergenic Intergenic 60301 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 326-241 chr2 53317730 53317904 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -449966 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 269-327 chr5 148076353 148076612 + 2 NA intron (NM_006846, intron 4 of 32) L1MB7|LINE|L1 12502 NM_001127698 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 706-60 chr5 114225989 114226574 + 2 NA Intergenic L1ME3G|LINE|L1 -135789 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 347-254 chr2 213331343 213331606 + 2 NA intron (NR_047660, intron 4 of 14) L1MA2|LINE|L1 47010 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 248-140 chr16 35960286 35960453 + 2 NA Intergenic ALR/Alpha|Satellite|centr 213817 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 237-149 chr18 52799629 52799786 + 2 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -437394 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 312-263 chr2 132942866 132943135 + 2 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) 27443 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 356-126 chr13 31369262 31369492 + 2 NA Intergenic Intergenic 169402 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 488-239 chr6 104345394 104345733 + 2 NA Intergenic L1ME2|LINE|L1 513983 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 241-130 chr16 6322901 6323114 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 303304 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 560-48 chr14 48522248 48522632 + 2 NA Intergenic Intergenic -727426 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 243-377 chr6 8476772 8477008 + 2 NA intron (NR_038980, intron 2 of 4) MER77B|LTR|ERVL 41267 NR_038979 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 406-160 chr2 225398627 225398989 + 2 NA promoter-TSS (NM_001371273) promoter-TSS (NM_001371273) -902 NM_001371273 494-167 chr3 28233460 28233832 + 2 NA Intergenic Intergenic -7973 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 326-541 chr8 100872949 100873174 + 2 NA Intergenic Intergenic 77510 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 260-330 chr4 184137278 184137436 + 2 NA intron (NM_153343, intron 2 of 7) AluSx1|SINE|Alu 80516 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 368-319 chr4 23124077 23124381 + 2 NA Intergenic L2a|LINE|L2 410140 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 245-87 chr11 112934720 112934911 + 2 NA Intergenic L1ME2|LINE|L1 -26605 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 279-400 chr7 113674072 113674298 + 2 NA Intergenic Intergenic 244824 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 477-176 chr20 13944400 13944740 + 2 NA intron (NR_073206, intron 2 of 20) L2|LINE|L2 46044 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 119-38 chr20 11921145 11921206 + 2 NA intron (NM_014962, intron 3 of 3) intron (NM_014962, intron 3 of 3) 3282 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 411-73 chr12 90415280 90415508 + 2 NA Intergenic Intergenic 122076 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 165-23 chr12 15692762 15692874 + 2 NA intron (NM_004447, intron 1 of 20) HAL1|LINE|L1 96570 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 622-154 chr9 107729958 107730449 + 2 NA Intergenic AluJo|SINE|Alu -240434 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 314-161 chr14 33876961 33877188 + 2 NA Intergenic L1MB2|LINE|L1 74000 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 477-33 chr10 26285727 26286173 + 2 NA intron (NM_000818, intron 12 of 16) intron (NM_000818, intron 12 of 16) 69176 NM_001134366 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 277-51 chr10 48561353 48561523 + 2 NA intron (NR_144642, intron 2 of 9) L1ME1|LINE|L1 43635 NR_144644 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 198-90 chr17 63285065 63285214 + 2 NA intron (NM_025185, intron 8 of 25) L1MEc|LINE|L1 155128 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 322-370 chr4 62779249 62779471 + 2 NA Intergenic Intergenic -617595 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 663-111 chr7 134280999 134281419 + 2 NA Intergenic L2a|LINE|L2 35721 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 574-147 chr6 36266078 36266544 + 2 NA intron (NM_173676, intron 1 of 7) MLT1F2|LTR|ERVL-MaLR -4149 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 316-463 chr5 141295243 141295441 + 2 NA Intergenic L1MB4|LINE|L1 8707 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 188-224 chrX 153370808 153370969 + 2 NA Intergenic Intergenic 18859 NR_135656 105373378 Hs.719349 NR_135656 ENSG00000063587 LOC105373378 - uncharacterized LOC105373378 ncRNA 692-86 chr6 124675465 124675943 + 2 NA intron (NM_001040214, intron 4 of 6) L1MB1|LINE|L1 -286841 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 212-112 chr15 100795747 100795936 + 2 NA Intergenic L1ME1|LINE|L1 -53911 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 349-250 chr2 49282588 49282847 + 2 NA Intergenic Intergenic -128190 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 312-228 chr2 39553752 39553986 + 2 NA intron (NR_037875, intron 5 of 5) L1MA8|LINE|L1 -111629 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 326-86 chr10 123835996 123836225 + 2 NA intron (NM_198148, intron 4 of 13) intron (NM_198148, intron 4 of 13) 55697 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 478-225 chr4 173077068 173077500 + 2 NA Intergenic Intergenic -91527 NM_017423 51809 Hs.548088 NM_017423 ENSG00000109586 GALNT7 GALNAC-T7|GalNAcT7 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 367-234 chr2 193757575 193757900 + 2 NA Intergenic L1MEg|LINE|L1 -586532 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 213-168 chr22 33887050 33887238 + 2 NA intron (NM_001362949, intron 1 of 15) MLT1A0|LTR|ERVL-MaLR 33284 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 232-101 chr14 73384444 73384610 + 2 NA intron (NM_001005743, intron 2 of 12) L1MEg|LINE|L1 74053 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 194-72 chr16 71810256 71810418 + 2 NA Intergenic AluSx1|SINE|Alu -1503 NM_001128 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 subunit gamma 1 protein-coding 237-74 chr12 44609668 44609835 + 2 NA intron (NM_006159, intron 15 of 20) intron (NM_006159, intron 15 of 20) 265910 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 291-251 chr2 230626056 230626329 + 2 NA Intergenic Intergenic 74337 NR_040038 151475 Hs.528154 NR_040038 ENSG00000226125 LINC01907 - long intergenic non-protein coding RNA 1907 ncRNA 307-529 chrX 58405469 58405677 + 2 NA Intergenic ALR/Alpha|Satellite|centr -494940 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 555-13 chr10 8775491 8775979 + 2 NA Intergenic Intergenic -122254 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 321-310 chr2 179370050 179370288 + 2 NA Intergenic Intergenic -105337 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 219-311 chr6 64074316 64074466 + 2 NA intron (NM_001292009, intron 32 of 43) intron (NM_001292009, intron 32 of 43) 267555 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 173-109 chr5 38646882 38647011 + 2 NA intron (NR_103554, intron 5 of 8) LTR16|LTR|ERVL -51541 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 333-309 chr20 38619437 38619646 + 2 NA intron (NM_001164431, intron 1 of 14) L2a|LINE|L2 17732 NM_001164431 343578 NM_001164431 ENSG00000124143 ARHGAP40 C20orf95|dJ1100H13.4 Rho GTPase activating protein 40 protein-coding 614-74 chr22 26626108 26626579 + 2 NA intron (NM_001886, intron 4 of 5) AluSz|SINE|Alu 4380 NM_001886 1413 Hs.57690 NM_001886 ENSG00000196431 CRYBA4 CTRCT23|CYRBA4|MCOPCT4 crystallin beta A4 protein-coding 865-4 chr1 190719911 190720613 + 2 NA intron (NR_033922, intron 1 of 4) L2|LINE|L2 95372 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 227-401 chr9 106369162 106369361 + 2 NA Intergenic L1M4|LINE|L1 -231667 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 527-247 chr7 56134814 56135261 + 2 NA Intergenic Intergenic -18620 NM_001145712 389493 Hs.177948 NM_001145712 ENSG00000185290 NUPR2 NUPR1L nuclear protein 2, transcriptional regulator protein-coding 281-458 chr9 83098120 83098311 + 2 NA Intergenic Intergenic -35073 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 233-18 chr1 189648999 189649158 + 2 NA Intergenic Intergenic 826932 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 279-324 chr5 46293184 46293409 + 2 NA Intergenic ALR/Alpha|Satellite|centr -596916 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 428-197 chr3 167078984 167079311 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie 180464 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 315-505 chr9 26015462 26015735 + 2 NA Intergenic Intergenic -51077 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 300-61 chr11 22200311 22200592 + 2 NA intron (NM_001142649, intron 1 of 21) Charlie1a|DNA|hAT-Charlie 7275 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 466-118 chr2 17686616 17686985 + 2 NA intron (NM_024624, intron 22 of 26) Tigger4|DNA|TcMar-Tigger 67010 NM_001142286 79677 Hs.526728 NM_024624 ENSG00000163029 SMC6 SMC-6|SMC6L1|hSMC6 structural maintenance of chromosomes 6 protein-coding 258-346 chr6 79893194 79893388 + 2 NA Intergenic L1ME2|LINE|L1 54262 NM_022726 6785 Hs.101915 NM_022726 ENSG00000118402 ELOVL4 ADMD|CT118|ISQMR|SCA34|STGD2|STGD3 ELOVL fatty acid elongase 4 protein-coding 206-110 chr2 30177296 30177425 + 2 NA Intergenic Intergenic -10074 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 377-303 chr5 8100591 8100931 + 2 NA Intergenic MER8|DNA|TcMar-Tigger 231613 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 452-166 chr3 60887958 60888298 + 2 NA TTS (NR_148922) TTS (NR_148922) -270258 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 372-232 chr2 71739524 71739732 + 2 NA Intergenic L1PA11|LINE|L1 272929 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 397-287 chr6 140047544 140047933 + 2 NA intron (NR_121623, intron 1 of 1) intron (NR_121623, intron 1 of 1) -56477 NR_121624 103352541 Hs.582647 NR_121624 LOC103352541 - uncharacterized LOC103352541 ncRNA 296-71 chr11 12205179 12205410 + 2 NA intron (NR_144420, intron 4 of 27) intron (NR_144420, intron 4 of 27) 41611 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 348-188 chr17 67035206 67035487 + 2 NA Intergenic L2c|LINE|L2 -9208 NM_000727 786 Hs.147989 NM_000727 ENSG00000108878 CACNG1 CACNLG calcium voltage-gated channel auxiliary subunit gamma 1 protein-coding 218-310 chr7 111388029 111388174 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 174190 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 191-179 chr5 131531338 131531509 + 2 NA intron (NM_016340, intron 6 of 27) intron (NM_016340, intron 6 of 27) 103806 NM_001164386 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 349-22 chr1 101565894 101566168 + 2 NA Intergenic L1ME3F|LINE|L1 242194 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 288-168 chr19 30273435 30273623 + 2 NA Intergenic L1MC2|LINE|L1 -98855 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 241-193 chr2 117466005 117466178 + 2 NA Intergenic L1PB3|LINE|L1 -348600 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 360-391 chr5 179298941 179299232 + 2 NA intron (NM_014244, intron 2 of 21) intron (NM_014244, intron 2 of 21) 46375 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 157-78 chr22 43660575 43660665 + 2 NA intron (NM_198856, intron 15 of 29) MLT1J|LTR|ERVL-MaLR 144366 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 542-75 chr16 71959662 71960060 + 2 NA intron (NM_181536, intron 16 of 29) AluJb|SINE|Alu 40117 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 388-104 chr14 34436069 34436448 + 2 NA intron (NM_138288, intron 1 of 1) intron (NM_138288, intron 1 of 1) 25982 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 308-426 chr6 76456625 76456860 + 2 NA Intergenic Intergenic 136881 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 361-485 chr9 112967371 112967682 + 2 NA Intergenic L2b|LINE|L2 44666 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 185-3 chr1 63081787 63081933 + 2 NA Intergenic Intergenic -69389 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 338-364 chr4 4911249 4911483 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -9442 NR_125893 101928306 Hs.543743 NR_125893 LOC101928306 - uncharacterized LOC101928306 ncRNA 343-530 chr8 43763324 43763495 + 2 NA Intergenic ALR/Alpha|Satellite|centr 470967 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 195-187 chr5 26165860 26166025 + 2 NA Intergenic Intergenic 872644 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 392-149 chr2 82957583 82957898 + 2 NA Intergenic Intergenic 100937 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 263-401 chr7 85948796 85949049 + 2 NA Intergenic L1MA3|LINE|L1 527800 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 404-15 chr1 105182425 105182710 + 2 NA Intergenic HAL1ME|LINE|L1 436368 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 320-323 chr21 29067427 29067744 + 2 NA exon (NM_006585, exon 4 of 15) exon (NM_006585, exon 4 of 15) 6063 NM_006585 10694 Hs.125113 NM_006585 ENSG00000156261 CCT8 C21orf112|Cctq|D21S246|PRED71 chaperonin containing TCP1 subunit 8 protein-coding 364-375 chr6 13895256 13895438 + 2 NA Intergenic AluSx1|SINE|Alu -29099 NM_001165034 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 193-131 chr20 51063686 51063803 + 2 NA Intergenic L1MC4|LINE|L1 -40637 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 519-95 chr2 16223128 16223527 + 2 NA Intergenic Intergenic 172900 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 302-345 chr5 42385389 42385670 + 2 NA Intergenic Intergenic -37910 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 373-113 chr14 65807288 65807536 + 2 NA Intergenic Intergenic 336310 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 319-141 chr14 60178814 60179070 + 2 NA Intergenic L1MC4a|LINE|L1 -9078 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 416-190 chr2 190538218 190538440 + 2 NA Intergenic L1MA4|LINE|L1 -3607 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 335-155 chr14 43354834 43355093 + 2 NA Intergenic Intergenic 1152320 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 349-284 chr2 224921335 224921658 + 2 NA intron (NM_001290263, intron 2 of 55) intron (NM_001290263, intron 2 of 55) 25553 NM_001290263 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 495-61 chr14 53905510 53905903 + 2 NA Intergenic L1MEc|LINE|L1 42778 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 275-146 chr17 64158288 64158489 + 2 NA intron (NM_018469, intron 8 of 11) intron (NM_018469, intron 8 of 11) 12049 NR_002995 677842 Hs.405444 NR_002995 ENSG00000277887 SNORA50C ACA62|SNORA76|SNORA76C small nucleolar RNA, H/ACA box 50C snoRNA 376-280 chr4 60333687 60333895 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -588828 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 321-227 chr17 5792920 5793199 + 2 NA intron (NR_040000, intron 1 of 3) L2a|LINE|L2 20825 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 340-3 chr1 25598773 25599105 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -18529 NM_001289010 57134 Hs.197043 NM_020379 ENSG00000117643 MAN1C1 HMIC|MAN1A3|MAN1C|pp6318 mannosidase alpha class 1C member 1 protein-coding 582-43 chr15 25011716 25012111 + 2 NA intron (NR_146177, intron 20 of 147) intron (NR_146177, intron 20 of 147) -19960 NR_146168 100506965 Hs.592473 NR_146168 PWAR6 HBT8|PAR-6 Prader Willi/Angelman region RNA 6 ncRNA 247-263 chr3 76071919 76072110 + 2 NA Intergenic Intergenic -286465 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 268-156 chr17 70248298 70248479 + 2 NA Intergenic L1MEd|LINE|L1 78853 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 349-202 chr16 83198686 83198930 + 2 NA intron (NM_001220490, intron 3 of 12) intron (NM_001220490, intron 3 of 12) -208510 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 122-49 chr6 139704024 139704115 + 2 NA Intergenic MamRep605|LTR?|LTR? -67004 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 601-78 chr2 81790071 81790498 + 2 NA Intergenic Intergenic -323338 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 223-258 chr4 129644391 129644593 + 2 NA Intergenic Intergenic 126986 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 268-54 chr10 81274175 81274380 + 2 NA Intergenic Intergenic -600917 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 370-195 chr18 38945446 38945725 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 676590 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 281-192 chr2 16974319 16974535 + 2 NA Intergenic Intergenic -308593 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 346-182 chr16 78793410 78793748 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 693925 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 491-189 chr4 115303570 115303997 + 2 NA Intergenic Intergenic -190163 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 483-29 chr10 61822477 61822792 + 2 NA Intergenic Intergenic -79065 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 158-86 chr4 111426955 111427099 + 2 NA Intergenic L1MA3|LINE|L1 -566380 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 360-6 chr1 48544895 48545162 + 2 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -72820 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 506-245 chr5 158963571 158964016 + 2 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 134163 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 329-343 chr22 47503398 47503683 + 2 NA Intergenic L1ME1|LINE|L1 -16429 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 497-181 chr3 102872642 102873089 + 2 NA Intergenic L1M5|LINE|L1 437850 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 582-84 chr2 240100106 240100427 + 2 NA Intergenic L1PB3|LINE|L1 36039 NM_001163424 150678 Hs.293884 NM_138336 ENSG00000172428 COPS9 CSNAP|MYEOV2 COP9 signalosome subunit 9 protein-coding 137-62 chr3 24248682 24248773 + 2 NA intron (NM_001354708, intron 2 of 9) LTR33A|LTR|ERVL 97403 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 247-208 chr2 110948998 110949146 + 2 NA intron (NM_001142807, intron 12 of 17) intron (NM_001142807, intron 12 of 17) 166516 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 119-21 chr16 59328164 59328257 + 2 NA Intergenic MIRb|SINE|MIR 426981 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 241-158 chr18 68124520 68124755 + 2 NA Intergenic L2c|LINE|L2 -309815 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 234-312 chr5 68312902 68313134 + 2 NA Intergenic MIRc|SINE|MIR 20441 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 274-159 chr17 29222154 29222389 + 2 NA Intergenic Intergenic -24586 NM_005208 1411 Hs.46275 NM_005208 ENSG00000108255 CRYBA1 CRYB1|CTRCT10 crystallin beta A1 protein-coding 270-108 chr14 56929144 56929395 + 2 NA non-coding (NR_029385, exon 4 of 4) non-coding (NR_029385, exon 4 of 4) 116111 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 540-71 chr14 84535930 84536448 + 2 NA Intergenic Intergenic -735743 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 303-234 chr2 182495892 182496135 + 2 NA intron (NM_005019, intron 1 of 14) intron (NM_005019, intron 1 of 14) 26513 NM_005019 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 264-124 chr14 36096788 36096964 + 2 NA intron (NR_073454, intron 1 of 2) L2b|LINE|L2 26449 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 209-185 chr22 35063559 35063711 + 2 NA Intergenic MIRb|SINE|MIR -2523 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 409-185 chr22 22332980 22333307 + 2 NA Intergenic L1PA8|LINE|L1 35045 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 363-441 chr8 77176268 77176466 + 2 NA Intergenic Intergenic -175323 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 355-387 chr5 11446275 11446570 + 2 NA intron (NM_001288715, intron 2 of 20) MLT1I|LTR|ERVL-MaLR 142495 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 366-404 chr7 34060632 34060867 + 2 NA intron (NM_133468, intron 11 of 15) MIRb|SINE|MIR 155210 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 204-153 chr2 144767510 144767658 + 2 NA intron (NR_033870, intron 1 of 4) (TTATTT)n|Simple_repeat|Simple_repeat 99617 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 365-23 chr1 165759379 165759629 + 2 NA intron (NM_001256164, intron 3 of 6) intron (NM_001256164, intron 3 of 6) 9364 NM_001366129 54499 Hs.31498 NM_019026 ENSG00000143183 TMCO1 HP10122|PCIA3|PNAS-136|TMCC4 transmembrane and coiled-coil domains 1 protein-coding 121-18 chr17 72212344 72212434 + 2 NA Intergenic Intergenic 91369 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 361-126 chr13 42657146 42657446 + 2 NA Intergenic Intergenic 83144 NM_003701 8600 Hs.333791 NM_003701 ENSG00000120659 TNFSF11 CD254|ODF|OPGL|OPTB2|RANKL|TNLG6B|TRANCE|hRANKL2|sOdf TNF superfamily member 11 protein-coding 494-41 chr11 100993236 100993667 + 2 NA 3' UTR (NM_152432, exon 24 of 24) 3' UTR (NM_152432, exon 24 of 24) 59177 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 315-343 chr4 83740697 83740948 + 2 NA Intergenic L1ME1|LINE|L1 204714 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 323-309 chr22 28406164 28406398 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -53588 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 222-168 chr2 31013912 31014100 + 2 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 115634 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 289-467 chr8 101753554 101753840 + 2 NA intron (NM_001040625, intron 4 of 6) MLT1L|LTR|ERVL-MaLR 37272 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 251-360 chr7 8451528 8451702 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 18006 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 251-102 chr14 85329257 85329430 + 2 NA Intergenic Intergenic 57411 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 336-225 chr18 34867790 34868095 + 2 NA 3' UTR (NM_001391, exon 17 of 17) 3' UTR (NM_001391, exon 17 of 17) 49561 NM_032980 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 207-53 chr11 29751847 29752044 + 2 NA Intergenic MIR|SINE|MIR 133143 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 135-29 chr18 68403155 68403246 + 2 NA Intergenic Intergenic 311908 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 413-135 chr2 65232191 65232531 + 2 NA intron (NM_001005386, intron 1 of 9) intron (NM_001005386, intron 1 of 9) 4666 NM_005722 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 402-43 chr11 22865327 22865600 + 2 NA Intergenic Intergenic -4989 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 227-110 chr14 68661259 68661419 + 2 NA intron (NM_001321818, intron 10 of 10) L2c|LINE|L2 -32552 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 266-101 chr13 91566700 91566923 + 2 NA intron (NM_004466, intron 2 of 7) intron (NM_004466, intron 2 of 7) 168190 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 391-141 chr17 68651223 68651499 + 2 NA intron (NR_110825, intron 2 of 4) L1ME3B|LINE|L1 23207 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 362-110 chr12 29974281 29974585 + 2 NA Intergenic Intergenic -189674 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 503-96 chr14 62593036 62593419 + 2 NA Intergenic LTR16B1|LTR|ERVL 452231 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 369-288 chr4 41606199 41606399 + 2 NA intron (NM_001330786, intron 3 of 22) intron (NM_001330786, intron 3 of 22) -6410 NM_001330674 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 218-167 chr2 126540404 126540591 + 2 NA Intergenic L1MCa|LINE|L1 -115438 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 416-329 chr8 51634381 51634677 + 2 NA intron (NM_144651, intron 2 of 22) L1PA16|LINE|L1 174916 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 256-204 chr2 107183453 107183627 + 2 NA intron (NR_049853, intron 2 of 3) AluSz6|SINE|Alu 165985 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 320-175 chr15 83102909 83103070 + 2 NA Intergenic MER33|DNA|hAT-Charlie -4656 NM_001353883 53346 Hs.513094 NM_023003 ENSG00000136404 TM6SF1 - transmembrane 6 superfamily member 1 protein-coding 262-133 chr14 83537539 83537730 + 2 NA Intergenic L2b|LINE|L2 895002 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 241-257 chr4 32690810 32691026 + 2 NA Intergenic Intergenic 339880 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 262-234 chr2 189382348 189382545 + 2 NA Intergenic Intergenic -58987 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 341-92 chr11 86468826 86469051 + 2 NA intron (NM_001014811, intron 6 of 13) MIRb|SINE|MIR 94051 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 197-54 chr14 38843496 38843628 + 2 NA intron (NR_039982, intron 2 of 4) intron (NR_039982, intron 2 of 4) -39034 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 431-5 chr1 34700791 34701177 + 2 NA Intergenic Intergenic -31290 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 303-498 chr9 99266222 99266414 + 2 NA Intergenic Intergenic 44036 NM_006808 10952 Hs.191887 NM_006808 ENSG00000106803 SEC61B - SEC61 translocon beta subunit protein-coding 195-35 chr11 28192416 28192543 + 2 NA intron (NM_001113528, intron 3 of 6) L1M5|LINE|L1 84091 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 432-272 chr7 62795152 62795505 + 2 NA Intergenic ALR/Alpha|Satellite|centr 508728 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 616-104 chr3 26476200 26476760 + 2 NA Intergenic Intergenic -146326 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 204-123 chr18 10804398 10804525 + 2 NA intron (NM_022068, intron 8 of 51) intron (NM_022068, intron 8 of 51) -44812 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 196-100 chr17 72546178 72546332 + 2 NA intron (NR_036488, intron 1 of 3) MER33|DNA|hAT-Charlie 46549 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 408-337 chr8 108310209 108310610 + 2 NA Intergenic L1MA3|LINE|L1 -61692 NM_001568 3646 Hs.405590 NM_001568 ENSG00000104408 EIF3E EIF3-P48|EIF3S6|INT6|eIF3-p46 eukaryotic translation initiation factor 3 subunit E protein-coding 342-537 chr8 131792458 131792785 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -111472 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 608-89 chr21 16850572 16851115 + 2 NA Intergenic Intergenic 260606 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 426-285 chr8 33374705 33375019 + 2 NA intron (NM_032664, intron 4 of 4) AluSx1|SINE|Alu 98284 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 220-214 chr3 10909853 10910015 + 2 NA intron (NM_014229, intron 6 of 13) L2|LINE|L2 -82800 NM_001348253 6529 Hs.443874 NM_003042 ENSG00000157103 SLC6A1 GABATHG|GABATR|GAT1|MAE solute carrier family 6 member 1 protein-coding 272-450 chr8 100925923 100926188 + 2 NA intron (NM_001135700, intron 2 of 5) intron (NM_001135700, intron 2 of 5) 24516 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 304-32 chr1 238091753 238091963 + 2 NA Intergenic MER20|DNA|hAT-Charlie -200936 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 224-265 chr5 149057105 149057266 + 2 NA intron (NM_024577, intron 1 of 16) L1MC4|LINE|L1 5224 NR_030310 693169 NR_030310 ENSG00000207714 MIR584 MIRN584|hsa-mir-584 microRNA 584 ncRNA 280-64 chr10 128573264 128573415 + 2 NA Intergenic UCON49|LINE|L2 287389 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 372-324 chr3 37729377 37729575 + 2 NA intron (NM_002207, intron 18 of 27) intron (NM_002207, intron 18 of 27) 132304 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 249-233 chr2 228414901 228415102 + 2 NA Intergenic Intergenic 196394 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 226-31 chr10 6628722 6628900 + 2 NA intron (NR_120634, intron 5 of 5) intron (NR_120634, intron 5 of 5) -6259 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 395-224 chr3 105549404 105549777 + 2 NA intron (NM_001243280, intron 11 of 14) intron (NM_001243280, intron 11 of 14) 182681 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 365-432 chr9 137991187 137991483 + 2 NA intron (NM_001243812, intron 15 of 45) L1PB1|LINE|L1 -44275 NR_132978 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 362-169 chr15 70896511 70896701 + 2 NA intron (NM_001363732, intron 4 of 15) intron (NM_001363732, intron 4 of 15) 4163 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 211-5 chr1 38796127 38796280 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 63569 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 402-166 chr2 128122635 128122884 + 2 NA intron (NR_027671, intron 10 of 40) intron (NR_027671, intron 10 of 40) 31559 NR_027671 56886 Hs.743306 NM_020120 ENSG00000136731 UGGT1 HUGT1|UGCGL1|UGT1 UDP-glucose glycoprotein glucosyltransferase 1 protein-coding 272-119 chr14 70172107 70172294 + 2 NA intron (NM_033262, intron 1 of 7) MIR|SINE|MIR -14908 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 328-54 chr10 81370335 81370549 + 2 NA Intergenic L1PB1|LINE|L1 -504752 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 306-289 chr21 16965187 16965447 + 2 NA Intergenic L1M2a|LINE|L1 375080 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 211-186 chr3 56431629 56431787 + 2 NA intron (NR_132749, intron 2 of 17) intron (NR_132749, intron 2 of 17) 36759 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 217-223 chr3 50902853 50903049 + 2 NA intron (NM_004947, intron 4 of 52) L1PA11|LINE|L1 227871 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 200-119 chr2 2979102 2979235 + 2 NA intron (NR_110228, intron 3 of 6) L1M2|LINE|L1 146858 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 320-372 chr3 190381111 190381359 + 2 NA Intergenic Intergenic -6637 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 404-244 chr4 176878667 176879008 + 2 NA intron (NR_149104, intron 1 of 1) intron (NR_149104, intron 1 of 1) 3135 NR_149104 105377556 NR_149104 ENSG00000250263 LINC02509 - long intergenic non-protein coding RNA 2509 ncRNA 384-101 chr13 103546930 103547230 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 121880 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 314-409 chr4 31165048 31165278 + 2 NA Intergenic Intergenic -5981 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 767-38 chr4 73359992 73360433 + 2 NA Intergenic L1PA5|LINE|L1 -44075 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 238-175 chr2 76336899 76337077 + 2 NA Intergenic L1PBa1|LINE|L1 -626073 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 182-92 chr2 84942224 84942352 + 2 NA Intergenic Intergenic -28873 NM_020122 56888 Hs.654968 NM_020122 ENSG00000176407 KCMF1 DEBT91|FIGC|PCMF|ZZZ1 potassium channel modulatory factor 1 protein-coding 275-395 chrX 56081278 56081546 + 2 NA intron (NM_001324104, intron 2 of 6) L1MB4|LINE|L1 -150944 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 347-6 chr1 43808381 43808606 + 2 NA intron (NM_001270459, intron 3 of 11) L1MEc|LINE|L1 -30129 NR_106727 102464830 NR_106727 ENSG00000283477 MIR6079 hsa-mir-6079 microRNA 6079 ncRNA 726-80 chr8 119494297 119494701 + 2 NA Intergenic LTR16A1|LTR|ERVL 78053 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 510-117 chr19 9173928 9174284 + 2 NA Intergenic Intergenic -11488 NM_175883 162998 Hs.531755 NM_175883 ENSG00000188000 OR7D2 HTPCRH03|OR19-10|OR19-4 olfactory receptor family 7 subfamily D member 2 protein-coding 332-543 chr8 120786517 120786808 + 2 NA intron (NM_021021, intron 1 of 6) L1PB3|LINE|L1 25384 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 490-295 chr8 103433209 103433600 + 2 NA intron (NM_015420, intron 7 of 10) intron (NM_015420, intron 7 of 10) 18018 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 347-387 chr5 36762090 36762379 + 2 NA Intergenic LTR16A1|LTR|ERVL 114460 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 406-30 chr10 18762469 18762731 + 2 NA Intergenic L1ME4c|LINE|L1 103169 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 418-286 chr8 88423333 88423614 + 2 NA Intergenic Intergenic -95990 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 217-199 chr2 240309000 240309142 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -126592 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 176-50 chr18 65165350 65165480 + 2 NA Intergenic Intergenic -584837 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 340-213 chr18 40790406 40790596 + 2 NA Intergenic Intergenic 724215 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 453-113 chr2 80861625 80862007 + 2 NA Intergenic Intergenic 548437 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 338-95 chr11 33561107 33561382 + 2 NA intron (NM_012194, intron 7 of 20) intron (NM_012194, intron 7 of 20) 139496 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 258-380 chr8 10004677 10004879 + 2 NA Intergenic Intergenic -49514 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 517-101 chr17 53727002 53727341 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -95756 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 342-259 chr2 152280831 152281148 + 2 NA Intergenic L1MDa|LINE|L1 -54185 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 390-154 chr18 46872671 46872901 + 2 NA intron (NR_136685, intron 1 of 11) HERVI-int|LTR|ERV1 44721 NR_136685 9063 Hs.57769 NM_004671 ENSG00000078043 PIAS2 ARIP3|DIP|MIZ1|PIASX|SIZ2|ZMIZ4 protein inhibitor of activated STAT 2 protein-coding 600-23 chr11 93189930 93190463 + 2 NA intron (NM_152313, intron 1 of 10) intron (NM_152313, intron 1 of 10) 7230 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 322-472 chr6 162000160 162000432 + 2 NA intron (NM_013988, intron 2 of 8) L1MC|LINE|L1 529319 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 259-179 chr19 37596883 37597082 + 2 NA intron (NM_001172225, intron 1 of 4) MIRb|SINE|MIR 2106 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 337-572 chr9 25454600 25454835 + 2 NA Intergenic Intergenic 224141 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 249-407 chr8 55164974 55165179 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 63048 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 304-96 chr12 304685 304887 + 2 NA intron (NM_001042603, intron 24 of 27) intron (NM_001042603, intron 24 of 27) -41913 NM_001190997 6540 Hs.504398 NM_016615 ENSG00000010379 SLC6A13 GAT-2|GAT2|GAT3 solute carrier family 6 member 13 protein-coding 228-347 chr8 118381531 118381661 + 2 NA intron (NM_001349811, intron 3 of 4) MLT1D|LTR|ERVL-MaLR -239405 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 174-96 chr3 137601605 137601695 + 2 NA Intergenic Intergenic -162665 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 230-359 chr7 106432712 106432914 + 2 NA Intergenic L1PB3|LINE|L1 -147830 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 340-436 chr5 30721828 30722068 + 2 NA Intergenic L2|LINE|L2 -471738 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 270-72 chr12 14423740 14423950 + 2 NA intron (NM_181352, intron 1 of 14) intron (NM_181352, intron 1 of 14) 38564 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 467-20 chr1 240370052 240370372 + 2 NA intron (NM_020066, intron 14 of 17) L1ME3C|LINE|L1 241943 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 368-56 chr10 59140899 59141163 + 2 NA Intergenic Intergenic 35433 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 334-566 chr9 73973567 73973845 + 2 NA Intergenic Intergenic -397825 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 318-176 chr14 83685158 83685339 + 2 NA Intergenic L1MB3|LINE|L1 1042616 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 247-204 chr2 99649367 99649526 + 2 NA intron (NM_001025108, intron 12 of 23) intron (NM_001025108, intron 12 of 23) -159429 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 270-216 chr21 21362976 21363178 + 2 NA intron (NM_001352592, intron 9 of 18) intron (NM_001352592, intron 9 of 18) 215915 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 431-310 chr8 139284914 139285156 + 2 NA Intergenic Intergenic -370994 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 287-414 chr8 112304335 112304589 + 2 NA intron (NM_052900, intron 50 of 68) intron (NM_052900, intron 50 of 68) -339031 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 344-32 chr1 206934958 206935285 + 2 NA intron (NM_002644, intron 5 of 10) intron (NM_002644, intron 5 of 10) 11345 NM_002644 5284 Hs.497589 NM_002644 ENSG00000162896 PIGR - polymeric immunoglobulin receptor protein-coding 389-315 chr6 50913281 50913531 + 2 NA Intergenic Intergenic 94535 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 392-6 chr1 111498052 111498359 + 2 NA intron (NM_001081976, intron 1 of 5) intron (NM_001081976, intron 1 of 5) 5428 NM_001302678 140 Hs.281342 NM_000677 ENSG00000282608 ADORA3 A3AR adenosine A3 receptor protein-coding 258-350 chr6 115933564 115933727 + 2 NA 3' UTR (NM_002031, exon 8 of 8) 3' UTR (NM_002031, exon 8 of 8) -105086 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 324-231 chr18 68234822 68235020 + 2 NA Intergenic Intergenic -420099 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 315-222 chr2 8952569 8952740 + 2 NA intron (NR_135600, intron 1 of 12) L1PA16|LINE|L1 51030 NR_135606 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 210-242 chr6 40592519 40592717 + 2 NA Intergenic Intergenic -5254 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 634-8 chr1 192224727 192225310 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 66556 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 243-331 chr4 90121580 90121754 + 2 NA Intergenic Intergenic -5866 NM_001145065 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 502-150 chr2 156537867 156538268 + 2 NA intron (NM_000408, intron 6 of 16) intron (NM_000408, intron 6 of 16) 101688 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 321-135 chr12 73543331 73543505 + 2 NA Intergenic Intergenic 384228 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 409-288 chr8 8915011 8915235 + 2 NA Intergenic AluSx|SINE|Alu -21493 NM_004225 9258 Hs.379414 NM_004225 ENSG00000147324 MFHAS1 LRRC65|MASL1|ROCO4 malignant fibrous histiocytoma amplified sequence 1 protein-coding 674-4 chr1 101472687 101473072 + 2 NA Intergenic LTR41|LTR|ERVL 149042 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 316-425 chr5 16005395 16005620 + 2 NA Intergenic Intergenic 70325 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 311-332 chr3 25252571 25252814 + 2 NA intron (NM_001290216, intron 4 of 10) L1MB8|LINE|L1 -88110 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 530-109 chr19 56603275 56603625 + 2 NA intron (NR_163263, intron 2 of 4) L1MB8|LINE|L1 8148 NM_001370215 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 275-101 chr14 35492438 35492662 + 2 NA Intergenic L1MB4|LINE|L1 -41614 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 310-367 chr4 61576802 61576996 + 2 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 374727 NM_001371342 323-189 chr17 70197455 70197651 + 2 NA Intergenic Intergenic 28018 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 287-294 chr4 154933833 154934026 + 2 NA Intergenic L1MA9|LINE|L1 152424 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 329-576 chr8 87402902 87403176 + 2 NA Intergenic Intergenic 470976 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 294-505 chr9 104339888 104340082 + 2 NA Intergenic Intergenic 69756 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 254-306 chr5 38769657 38769849 + 2 NA intron (NR_109951, intron 2 of 3) intron (NR_109951, intron 2 of 3) -49480 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 230-118 chr14 80279965 80280090 + 2 NA intron (NR_038355, intron 2 of 8) intron (NR_038355, intron 2 of 8) -48970 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 416-270 chr5 29607342 29607585 + 2 NA Intergenic Intergenic -211487 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 189-159 chr5 42185038 42185170 + 2 NA Intergenic Intergenic -9759 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 615-43 chr15 46469179 46469496 + 2 NA Intergenic Intergenic -714752 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 459-179 chr3 26435162 26435546 + 2 NA Intergenic Intergenic -187452 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 544-151 chr3 105158402 105158751 + 2 NA Intergenic Intergenic -208137 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 259-313 chr5 51342113 51342270 + 2 NA Intergenic Intergenic 41141 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 250-352 chr5 94642742 94642954 + 2 NA intron (NM_032290, intron 4 of 20) intron (NM_032290, intron 4 of 20) 24179 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 339-578 chr8 91491558 91491877 + 2 NA Intergenic Intergenic 242398 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 238-26 chr1 199161178 199161383 + 2 NA intron (NR_147896, intron 1 of 3) intron (NR_147896, intron 1 of 3) 12682 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 335-552 chr8 134935877 134936092 + 2 NA Intergenic Intergenic 86049 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 262-288 chr3 106113344 106113520 + 2 NA Intergenic Intergenic -244031 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 306-244 chr2 107267214 107267432 + 2 NA intron (NR_049853, intron 2 of 3) L2a|LINE|L2 82202 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 382-132 chr16 60246303 60246614 + 2 NA Intergenic Intergenic 113335 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 182-72 chr17 69452187 69452326 + 2 NA intron (NM_002758, intron 1 of 11) MER20|DNA|hAT-Charlie 33276 NR_145982 105371880 NR_145982 LOC105371880 - uncharacterized LOC105371880 ncRNA 349-277 chr2 150851086 150851398 + 2 NA Intergenic Intergenic 222345 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 343-13 chr1 87541896 87542093 + 2 NA Intergenic L1MA3|LINE|L1 -170339 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 319-353 chr3 187955904 187956117 + 2 NA Intergenic Intergenic 20397 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 352-201 chr18 76118518 76118724 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -4377 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 568-163 chr5 112632387 112632766 + 2 NA Intergenic Intergenic 4140 NR_104672 102467214 Hs.124613 NR_104672 LINC02200 - long intergenic non-protein coding RNA 2200 ncRNA 409-66 chr13 76801905 76802294 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 84306 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 189-164 chr5 108373335 108373442 + 2 NA intron (NM_001163315, intron 1 of 8) L1M4|LINE|L1 8710 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 229-224 chr20 41844801 41844984 + 2 NA Intergenic L3|LINE|CR1 -226515 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 1242-4 chr16 10407769 10408653 + 2 NA intron (NM_024997, intron 1 of 11) L1PB1|LINE|L1 22150 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 335-573 chr9 107216199 107216414 + 2 NA Intergenic LTR82A|LTR|ERVL -66973 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 389-349 chr7 89150958 89151261 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -355372 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 412-113 chr16 79797076 79797387 + 2 NA intron (NR_104661, intron 2 of 3) MER5A|DNA|hAT-Charlie 1982 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 295-374 chr5 28075230 28075472 + 2 NA Intergenic Intergenic 212314 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 295-73 chr11 55601334 55601598 + 2 NA Intergenic Intergenic 2932 NM_001004700 219429 Hs.553620 NM_001004700 ENSG00000172188 OR4C11 OR11-136|OR4C11P olfactory receptor family 4 subfamily C member 11 protein-coding 415-98 chr17 67577279 67577634 + 2 NA intron (NM_181671, intron 4 of 9) AluSz|SINE|Alu -105871 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 332-222 chr19 18876290 18876480 + 2 NA intron (NM_021267, intron 6 of 7) AluJr|SINE|Alu 19773 NM_198207 10715 Hs.412355 NM_021267 ENSG00000223802 CERS1 EPM8|GDF-1|GDF1|LAG1|LASS1|UOG1 ceramide synthase 1 protein-coding 615-140 chr8 90880721 90881157 + 2 NA intron (NM_022351, intron 4 of 12) intron (NM_022351, intron 4 of 12) 89164 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 167-88 chr5 24513993 24514112 + 2 NA intron (NM_001362460, intron 5 of 9) intron (NM_001362460, intron 5 of 9) 130926 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 827-17 chr14 71866735 71867329 + 2 NA Intergenic AluJr|SINE|Alu -65139 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 497-93 chr17 66006640 66007086 + 2 NA intron (NM_001353129, intron 16 of 26) intron (NM_001353129, intron 16 of 26) -180320 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 345-366 chr3 175927866 175928131 + 2 NA Intergenic L2a|LINE|L2 -151665 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 447-200 chr4 107122455 107122744 + 2 NA Intergenic Intergenic -86286 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 318-358 chr3 83384665 83384907 + 2 NA Intergenic MLT2B3|LTR|ERVL 1398644 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 256-383 chr7 25646194 25646448 + 2 NA intron (NR_157815, intron 3 of 4) L2b|LINE|L2 16819 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 176-142 chr8 110828614 110828711 + 2 NA Intergenic Intergenic 198771 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 374-29 chr10 42374860 42375223 + 2 NA Intergenic AluSx4|SINE|Alu -6996 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 346-480 chr8 33093659 33093931 + 2 NA Intergenic L1ME1|LINE|L1 371960 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 200-173 chr3 55366598 55366727 + 2 NA Intergenic MIR|SINE|MIR 114736 NM_001256105 7474 Hs.643085 NM_003392 ENSG00000114251 WNT5A hWNT5A Wnt family member 5A protein-coding 366-212 chr2 114159647 114159975 + 2 NA Intergenic Intergenic -179827 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 317-11 chr1 65342576 65342763 + 2 NA intron (NM_001256864, intron 1 of 18) MIRb|SINE|MIR 33126 NM_001256864 9829 Hs.647643 NM_014787 ENSG00000116675 DNAJC6 DJC6|PARK19 DnaJ heat shock protein family (Hsp40) member C6 protein-coding 325-488 chr7 4886105 4886283 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -2478 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 406-321 chrX 74149700 74150041 + 2 NA intron (NR_028379, intron 5 of 6) L1PREC2|LINE|L1 68591 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 382-411 chr8 91325701 91325911 + 2 NA intron (NM_134266, intron 5 of 18) MIR3|SINE|MIR 76487 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 630-143 chr8 125035123 125035604 + 2 NA intron (NM_014846, intron 26 of 28) intron (NM_014846, intron 26 of 28) 36858 NM_003129 6713 Hs.71465 NM_003129 ENSG00000104549 SQLE - squalene epoxidase protein-coding 299-114 chr12 129607721 129607929 + 2 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 296200 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 341-246 chr2 62079026 62079230 + 2 NA intron (NM_001321781, intron 2 of 2) MER41C|LTR|ERV1 -116987 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 281-391 chr6 74426837 74427074 + 2 NA intron (NR_110856, intron 2 of 3) L1MA2|LINE|L1 357504 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 346-525 chr9 85109645 85109871 + 2 NA Intergenic Intergenic 403857 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 463-108 chr16 76755912 76756260 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -112850 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 374-74 chr12 85270956 85271245 + 2 NA Intergenic Intergenic -9120 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 287-77 chr10 120258607 120258866 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 96487 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 218-362 chrX 53702259 53702421 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -15621 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 241-137 chr16 78479952 78480136 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 380390 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 300-182 chr2 17329345 17329617 + 2 NA Intergenic Intergenic 188959 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 238-333 chr6 119480344 119480476 + 2 NA intron (NR_046100, intron 1 of 5) intron (NR_046100, intron 1 of 5) 10892 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 320-28 chr1 176681338 176681543 + 2 NA intron (NM_021936, intron 4 of 4) intron (NM_021936, intron 4 of 4) 218265 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 231-24 chr1 217104114 217104293 + 2 NA intron (NM_001134285, intron 1 of 8) intron (NM_001134285, intron 1 of 8) -13635 NM_001350122 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 222-68 chr11 79152727 79152885 + 2 NA intron (NM_001098816, intron 3 of 33) intron (NM_001098816, intron 3 of 33) 249303 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 384-351 chr7 94871421 94871740 + 2 NA Intergenic L1PB1|LINE|L1 -36014 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 375-194 chr2 6127338 6127556 + 2 NA Intergenic Intergenic 145469 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 422-100 chr15 84750354 84750625 + 2 NA intron (NM_014630, intron 1 of 10) L2a|LINE|L2 1897 NM_014630 9640 Hs.79347 NM_014630 ENSG00000166716 ZNF592 CAMOS|SCAR5 zinc finger protein 592 protein-coding 331-222 chr18 47397194 47397409 + 2 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 16805 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 259-125 chr14 82827549 82827707 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie 184996 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 431-38 chr10 52241091 52241489 + 2 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 72838 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 307-229 chr2 41571414 41571709 + 2 NA Intergenic L3|LINE|CR1 -305994 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 313-60 chr10 109117214 109117479 + 2 NA Intergenic HERV16-int|LTR|ERVL 805900 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 170-68 chr2 43972755 43972903 + 2 NA intron (NM_133259, intron 11 of 37) intron (NM_133259, intron 11 of 37) 23160 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 308-230 chr2 80109576 80109826 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 195051 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 351-381 chr5 45917180 45917486 + 2 NA Intergenic ALR/Alpha|Satellite|centr -220953 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 383-227 chr20 56996020 56996252 + 2 NA Intergenic Intergenic -217560 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 377-264 chr3 26091395 26091679 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -217842 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 291-303 chr3 170940544 170940822 + 2 NA Intergenic L1MC3|LINE|L1 -32046 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 620-94 chr3 172536505 172536936 + 2 NA Intergenic Intergenic -13290 NM_001190943 8743 Hs.478275 NM_003810 ENSG00000121858 TNFSF10 APO2L|Apo-2L|CD253|TL2|TNLG6A|TRAIL TNF superfamily member 10 protein-coding 317-67 chr10 108580330 108580522 + 2 NA Intergenic LTR8|LTR|ERV1 -511133 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 319-427 chr5 120952685 120952893 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -369761 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 268-88 chr12 48239886 48240076 + 2 NA Intergenic Intergenic -36689 NM_001004134 121275 Hs.446790 NM_001004134 ENSG00000172640 OR10AD1 OR10AD1P|OR12-1 olfactory receptor family 10 subfamily AD member 1 protein-coding 212-278 chr6 48645213 48645368 + 2 NA Intergenic L1M3|LINE|L1 -576601 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 313-171 chr15 92790244 92790446 + 2 NA Intergenic Intergenic -5139 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 579-54 chr17 68554484 68554899 + 2 NA intron (NM_017565, intron 3 of 10) intron (NM_017565, intron 3 of 10) 3736 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 270-402 chr8 118506254 118506502 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -114623 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 371-262 chr3 177057704 177057967 + 2 NA intron (NM_001321195, intron 2 of 14) intron (NM_001321195, intron 2 of 14) 138643 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 448-11 chr1 105695894 105696220 + 2 NA Intergenic Intergenic -77122 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 264-209 chr2 116518166 116518357 + 2 NA Intergenic L1MCa|LINE|L1 1174446 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 484-224 chr5 133727284 133727716 + 2 NA Intergenic Intergenic -114959 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 546-260 chrX 68975414 68975850 + 2 NA Intergenic L1MDa|LINE|L1 146635 NM_004429 1947 Hs.144700 NM_004429 ENSG00000090776 EFNB1 CFND|CFNS|EFB1|EFL3|EPLG2|Elk-L|LERK2 ephrin B1 protein-coding 451-47 chr12 57415822 57416109 + 2 NA intron (NM_001351204, intron 1 of 25) L1MC4|LINE|L1 15078 NM_001351211 22864 Hs.443673 NM_014925 ENSG00000179912 R3HDM2 CAG6|PR01365 R3H domain containing 2 protein-coding 301-351 chr5 28254760 28254926 + 2 NA Intergenic Intergenic 32822 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 132-47 chr21 38342955 38343061 + 2 NA intron (NR_110545, intron 1 of 5) intron (NR_110545, intron 1 of 5) 3068 NR_110545 102724678 Hs.635675 NR_110545 LINC01423 - long intergenic non-protein coding RNA 1423 ncRNA 274-376 chr8 50291060 50291301 + 2 NA intron (NR_135797, intron 2 of 20) L2a|LINE|L2 127049 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 369-286 chr4 37340174 37340399 + 2 NA intron (NM_001144990, intron 2 of 6) L2b|LINE|L2 95543 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 331-560 chr9 100383561 100383756 + 2 NA Intergenic LTR8A|LTR|ERV1 -30716 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 333-45 chr1 233434847 233435051 + 2 NA Intergenic Intergenic 107225 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 267-123 chr15 58453310 58453502 + 2 NA intron (NR_120338, intron 2 of 2) intron (NR_120338, intron 2 of 2) 21415 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 347-431 chr6 43973953 43974157 + 2 NA Intergenic L1ME1|LINE|L1 -26530 NR_160955 221416 Hs.531926 NM_153246 ENSG00000181577 C6orf223 - chromosome 6 open reading frame 223 ncRNA 436-244 chr5 85589090 85589454 + 2 NA Intergenic Intergenic -693172 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 286-232 chr2 205230243 205230523 + 2 NA intron (NM_205863, intron 15 of 21) L1MA2|LINE|L1 -452117 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 438-176 chr3 110790442 110790856 + 2 NA Intergenic Intergenic 279310 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 334-411 chr5 23852217 23852528 + 2 NA Intergenic L1PA16|LINE|L1 -98976 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 367-263 chr22 35000458 35000694 + 2 NA Intergenic Intergenic -2660 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 207-298 chr8 112969368 112969572 + 2 NA intron (NM_052900, intron 6 of 68) intron (NM_052900, intron 6 of 68) 325977 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 571-8 chr10 7069322 7069733 + 2 NA Intergenic L2a|LINE|L2 117257 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 171-59 chr2 118956058 118956169 + 2 NA intron (NM_006770, intron 1 of 16) L1PB1|LINE|L1 13944 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 449-182 chr4 10427302 10427714 + 2 NA Intergenic L1P3|LINE|L1 29918 NM_053042 85460 Hs.455089 NM_053042 ENSG00000178163 ZNF518B - zinc finger protein 518B protein-coding 262-442 chr8 138242766 138242945 + 2 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -159310 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 525-211 chr5 155372628 155372964 + 2 NA Intergenic L1ME4a|LINE|L1 359041 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 330-495 chr7 83917441 83917650 + 2 NA Intergenic Intergenic -268406 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 301-462 chr8 122653030 122653248 + 2 NA Intergenic L1M1|LINE|L1 40967 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 212-113 chr16 21697722 21697869 + 2 NA exon (NM_144672, exon 10 of 29).2 exon (NM_144672, exon 10 of 29).2 -7168 NM_170664 146183 Hs.408336 NM_144672 ENSG00000155719 OTOA CT108|DFNB22 otoancorin protein-coding 206-174 chr4 27793387 27793505 + 2 NA Intergenic L1PB4|LINE|L1 575967 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 208-134 chr2 170544291 170544442 + 2 NA intron (NM_001083615, intron 31 of 33) intron (NM_001083615, intron 31 of 33) 170201 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 241-203 chr2 152959435 152959607 + 2 NA Intergenic AluSz6|SINE|Alu 240884 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 529-97 chr2 48755967 48756406 + 2 NA promoter-TSS (NM_000233) promoter-TSS (NM_000233) -462 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 264-360 chr6 65189256 65189429 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -112076 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 458-154 chr20 19673988 19674407 + 2 NA intron (NM_020689, intron 9 of 16) intron (NM_020689, intron 9 of 16) -212324 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 400-96 chr14 66137251 66137516 + 2 NA Intergenic Intergenic -348988 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 714-56 chr4 121239516 121240102 + 2 NA Intergenic Intergenic -12326 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 141-77 chr6 139756744 139756874 + 2 NA Intergenic Intergenic -14264 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 324-114 chr12 22411369 22411659 + 2 NA Intergenic Intergenic -76800 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 428-235 chr5 85317959 85318290 + 2 NA Intergenic Intergenic -933244 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 359-305 chr22 41276083 41276302 + 2 NA intron (NM_001317930, intron 2 of 15) L1ME4a|LINE|L1 9995 NM_001278651 5905 Hs.183800 NM_002883 ENSG00000100401 RANGAP1 Fug1|RANGAP|SD Ran GTPase activating protein 1 protein-coding 168-131 chrX 95633271 95633384 + 2 NA Intergenic Intergenic -570101 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 269-384 chr7 54169604 54169793 + 2 NA Intergenic MER61E|LTR|ERV1 -160999 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 293-181 chr2 24545664 24545927 + 2 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) -38682 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 540-236 chrX 85781577 85782054 + 2 NA Intergenic L1PA11|LINE|L1 -53965 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 446-58 chr11 33241357 33241729 + 2 NA Intergenic L1MC3|LINE|L1 -15129 NM_001278163 10114 Hs.201918 NM_005734 ENSG00000110422 HIPK3 DYRK6|FIST3|PKY|YAK1 homeodomain interacting protein kinase 3 protein-coding 361-320 chr4 58962752 58963072 + 2 NA Intergenic Intergenic -21370 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 357-44 chr10 104471157 104471443 + 2 NA Intergenic Intergenic 8975 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 480-297 chr8 105186156 105186526 + 2 NA Intergenic L1PA16|LINE|L1 -132097 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 284-392 chr8 14502430 14502643 + 2 NA intron (NM_001322881, intron 2 of 6) L1PA7|LINE|L1 350974 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 272-287 chr3 186665344 186665565 + 2 NA promoter-TSS (NM_000412) promoter-TSS (NM_000412) -498 NM_000412 3273 Hs.1498 NM_000412 ENSG00000113905 HRG HPRG|HRGP|THPH11 histidine rich glycoprotein protein-coding 318-52 chr10 21255345 21255655 + 2 NA Intergenic MER3|DNA|hAT-Charlie 81198 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 264-52 chr10 69707847 69708011 + 2 NA Intergenic L1ME2|LINE|L1 77682 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 325-574 chr9 79011192 79011487 + 2 NA Intergenic Intergenic 134327 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 459-34 chr10 62157177 62157530 + 2 NA Intergenic Intergenic 107996 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 426-107 chr17 74550840 74551196 + 2 NA Intergenic Intergenic -4903 NM_006678 10871 Hs.2605 NM_006678 ENSG00000167850 CD300C CLM-6|CMRF-35|CMRF-35A|CMRF35|CMRF35-A1|CMRF35A|CMRF35A1|IGSF16|LIR CD300c molecule protein-coding 329-140 chr13 43652558 43652873 + 2 NA intron (NM_001347964, intron 2 of 17) intron (NM_001347964, intron 2 of 17) -23238 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 283-255 chr20 2733196 2733426 + 2 NA intron (NM_001110514, intron 7 of 17) L1M4|LINE|L1 40433 NM_001110514 57593 Hs.471955 NM_020833 ENSG00000088881 EBF4 COE4|O/E-4 EBF family member 4 protein-coding 517-98 chr16 83460044 83460408 + 2 NA intron (NM_001220489, intron 5 of 12) L1ME3E|LINE|L1 -48120 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 321-300 chr2 139841123 139841405 + 2 NA Intergenic L1MA1|LINE|L1 745421 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 560-38 chr12 76979699 76980067 + 2 NA Intergenic L1MA9|LINE|L1 85686 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 308-309 chr3 178277554 178277829 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -141510 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 223-247 chr4 47794854 47795024 + 2 NA intron (NM_006587, intron 2 of 21) L1MA10|LINE|L1 -36406 NR_125881 101927179 Hs.570822 NR_125880 LOC101927179 - uncharacterized LOC101927179 ncRNA 291-82 chr11 111517065 111517236 + 2 NA intron (NM_001100388, intron 3 of 5) intron (NM_001100388, intron 3 of 5) 2365 NM_001100388 399949 Hs.411600 NM_207430 ENSG00000183644 C11orf88 - chromosome 11 open reading frame 88 protein-coding 328-466 chr5 107109921 107110205 + 2 NA Intergenic L1MEg|LINE|L1 -99049 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 278-151 chr16 82038479 82038687 + 2 NA intron (NM_002153, intron 1 of 4) intron (NM_002153, intron 1 of 4) 3330 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 259-381 chr8 46078709 46078959 + 2 NA Intergenic ALR/Alpha|Satellite|centr 538809 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 318-530 chr8 27165006 27165204 + 2 NA Intergenic HAL1|LINE|L1 93299 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 249-43 chr10 36479321 36479563 + 2 NA Intergenic L1ME3B|LINE|L1 -646415 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 317-6 chr1 38907013 38907180 + 2 NA intron (NM_001304746, intron 4 of 7) L1MD1|LINE|L1 22423 NM_001304746 54933 Hs.524626 NM_017821 ENSG00000158315 RHBDL2 RRP2 rhomboid like 2 protein-coding 330-126 chr12 83705461 83705749 + 2 NA Intergenic L1M1|LINE|L1 1018450 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 1273-9 chr8 17853882 17854925 + 2 NA Intergenic Intergenic 41001 NM_147203 2267 Hs.491143 NM_004467 ENSG00000104760 FGL1 HFREP1|HP-041|HPS|LFIRE-1|LFIRE1 fibrinogen like 1 protein-coding 400-210 chr3 38432402 38432626 + 2 NA Intergenic AluSc5|SINE|Alu -21376 NM_001106 93 Hs.174273 NM_001106 ENSG00000114739 ACVR2B ACTRIIB|ActR-IIB|HTX4 activin A receptor type 2B protein-coding 279-392 chr7 47317475 47317694 + 2 NA intron (NM_022748, intron 20 of 30) intron (NM_022748, intron 20 of 30) 147219 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 659-23 chr12 23304573 23305139 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 129220 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 226-245 chr4 22849511 22849667 + 2 NA Intergenic Intergenic 135500 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 327-438 chr6 65201191 65201393 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -100126 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 252-12 chr1 101640824 101641037 + 2 NA Intergenic L3b|LINE|CR1 206150 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 313-543 chr8 135137213 135137404 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -96823 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 403-314 chr8 131653762 131654046 + 2 NA Intergenic L1MB7|LINE|L1 -250189 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 438-32 chr10 59922732 59923023 + 2 NA Intergenic L1M4c|LINE|L1 -16321 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 639-38 chr14 69771412 69771831 + 2 NA 3' UTR (NM_006925, exon 8 of 8) 3' UTR (NM_006925, exon 8 of 8) -3908 NR_029378 100289511 Hs.729250 NR_029378 LOC100289511 - uncharacterized LOC100289511 ncRNA 131-6 chr1 152361919 152362022 + 2 NA intron (NR_103779, intron 2 of 2) intron (NR_103779, intron 2 of 2) -1964 NM_001014342 388698 Hs.156124 NM_001014342 ENSG00000143520 FLG2 IFPS|PSS6 filaggrin family member 2 protein-coding 315-264 chr2 196397187 196397374 + 2 NA intron (NM_020760, intron 2 of 28) intron (NM_020760, intron 2 of 28) -35103 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 330-537 chr8 136203138 136203443 + 2 NA Intergenic Intergenic -327508 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 500-240 chr6 2549428 2549830 + 2 NA Intergenic Intergenic -84871 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 534-175 chr4 52923985 52924470 + 2 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 61910 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 332-442 chr5 164393047 164393224 + 2 NA Intergenic Intergenic 74267 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 244-35 chr10 68130925 68131095 + 2 NA intron (NR_045663, intron 2 of 17) L1ME3E|LINE|L1 21522 NR_045663 84665 Hs.55205 NM_032578 ENSG00000138347 MYPN CMD1DD|CMH22|MYOP|NEM11|RCM4 myopalladin protein-coding 619-123 chr7 91431368 91431875 + 2 NA Intergenic L1MA5|LINE|L1 167188 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 554-58 chr12 33172958 33173328 + 2 NA Intergenic Intergenic 266676 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 426-46 chr11 59450575 59450936 + 2 NA Intergenic Intergenic -6206 NM_001004708 219983 Hs.553650 NM_001004708 ENSG00000166884 OR4D6 OR11-250 olfactory receptor family 4 subfamily D member 6 protein-coding 287-393 chr8 16443969 16444160 + 2 NA Intergenic Intergenic -251273 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 170-121 chr6 9050164 9050295 + 2 NA Intergenic Intergenic 398020 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 966-14 chr2 98045698 98046368 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -41134 NR_144297 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 336-252 chr2 4783339 4783529 + 2 NA Intergenic L2|LINE|L2 -127212 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 270-417 chr8 139229229 139229404 + 2 NA Intergenic Intergenic -315275 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 246-341 chr5 156323541 156323711 + 2 NA Intergenic Intergenic -3131 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 339-377 chr3 104619068 104619400 + 2 NA Intergenic MER74A|LTR|ERVL -747479 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 269-362 chr6 142057305 142057504 + 2 NA Intergenic Intergenic 31395 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 366-383 chr6 129635658 129636009 + 2 NA intron (NM_033515, intron 3 of 14) intron (NM_033515, intron 3 of 14) 74344 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 223-273 chr5 39768615 39768754 + 2 NA Intergenic Intergenic 248253 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 321-111 chr11 113028627 113028915 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -65311 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 298-387 chr5 165866803 165867048 + 2 NA Intergenic Intergenic 1059445 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 1016-2 chr11 11749532 11750367 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 33273 NR_107037 102465870 NR_107037 ENSG00000278529 MIR8070 hsa-mir-8070 microRNA 8070 ncRNA 589-17 chr11 56958697 56959268 + 2 NA Intergenic L1MD2|LINE|L1 -29932 NM_001005323 390181 Hs.554520 NM_001005323 ENSG00000181273 OR5AK2 - olfactory receptor family 5 subfamily AK member 2 protein-coding 120-39 chr5 27856564 27856648 + 2 NA Intergenic Intergenic 384314 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 253-272 chr3 127565932 127566116 + 2 NA Intergenic Intergenic 9307 NR_106883 102466199 NR_106883 ENSG00000275067 MIR6825 hsa-mir-6825 microRNA 6825 ncRNA 523-265 chr8 77362060 77362380 + 2 NA Intergenic L1ME3A|LINE|L1 -88477 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 491-43 chr11 125808986 125809328 + 2 NA Intergenic L1MEg|LINE|L1 21030 NM_001129883 100169851 Hs.131278 NM_001129883 ENSG00000236027 PATE3 HEL-127|PATE-DJ prostate and testis expressed 3 protein-coding 125-70 chr8 134983675 134983762 + 2 NA Intergenic L1MEd|LINE|L1 133783 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 355-466 chr7 62579468 62579674 + 2 NA Intergenic ALR/Alpha|Satellite|centr 724485 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 515-23 chr10 35728709 35729159 + 2 NA Intergenic Intergenic -49368 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 366-121 chr14 38592172 38592460 + 2 NA Intergenic Intergenic -290280 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 280-236 chr20 61599262 61599466 + 2 NA promoter-TSS (NM_001252339).2 promoter-TSS (NM_001252339).2 -397 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 288-295 chr4 45113600 45113865 + 2 NA Intergenic Intergenic -387098 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 129-43 chr2 173826856 173826960 + 2 NA Intergenic Charlie15a|DNA|hAT-Charlie 136972 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 305-507 chr7 53304742 53304968 + 2 NA Intergenic MIR|SINE|MIR 269222 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 317-251 chr2 147640005 147640227 + 2 NA Intergenic Intergenic -204401 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 226-67 chr12 10414280 10414437 + 2 NA intron (NM_002261, intron 6 of 6) L1ME3A|LINE|L1 -4212 NM_001199805 100528032 Hs.387787 NM_001199805 KLRC4-KLRK1 - KLRC4-KLRK1 readthrough protein-coding 729-72 chr7 78110970 78111645 + 2 NA intron (NM_001301128, intron 19 of 20) intron (NM_001301128, intron 19 of 20) -235935 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 453-83 chr16 50331171 50331412 + 2 NA intron (NM_013263, intron 8 of 16) L1PA17|LINE|L1 37697 NM_013263 29117 Hs.437894 NM_013263 ENSG00000166164 BRD7 BP75|CELTIX1|NAG4 bromodomain containing 7 protein-coding 244-126 chr17 1281928 1282163 + 2 NA intron (NM_172367, intron 1 of 2) intron (NM_172367, intron 1 of 2) 2383 NM_172367 286753 Hs.146059 NM_172367 ENSG00000184811 TRARG1 BEC-1|DSPB1|IFITMD3|LOST1|TUSC5 trafficking regulator of GLUT4 (SLC2A4) 1 protein-coding 539-176 chr6 40356314 40356842 + 2 NA promoter-TSS (NR_038887) promoter-TSS (NR_038887) -572 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 822-28 chr2 28302943 28303581 + 2 NA intron (NM_001261840, intron 11 of 11) L1ME2|LINE|L1 7197 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 446-212 chr4 33296327 33296618 + 2 NA Intergenic Intergenic 743421 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 296-57 chr10 78103478 78103735 + 2 NA Intergenic AluJr|SINE|Alu 69743 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 362-56 chr10 42918673 42918952 + 2 NA Intergenic L1MC5a|LINE|L1 47291 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 443-125 chr17 74404305 74404552 + 2 NA Intergenic Intergenic -27660 NM_022036 55890 Hs.446438 NM_018653 ENSG00000170412 GPRC5C RAIG-3|RAIG3 G protein-coupled receptor class C group 5 member C protein-coding 343-79 chr11 82779099 82779295 + 2 NA Intergenic L1M1|LINE|L1 -45333 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 363-361 chr5 62972571 62972759 + 2 NA Intergenic Intergenic 393846 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 329-570 chr8 77773102 77773406 + 2 NA Intergenic L1MA3|LINE|L1 322557 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 518-113 chr18 6189292 6189714 + 2 NA intron (NM_001365769, intron 12 of 16) L1MEg|LINE|L1 -67241 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 245-142 chr15 56579161 56579357 + 2 NA Intergenic Intergenic -114122 NM_018365 55329 Hs.444483 NM_018365 ENSG00000138587 MNS1 SPATA40 meiosis specific nuclear structural 1 protein-coding 359-374 chr4 109260116 109260307 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 42447 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 245-370 chr9 75811846 75812024 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -78709 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 354-431 chr7 52678081 52678432 + 2 NA Intergenic Intergenic -357377 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 346-479 chr8 29515998 29516211 + 2 NA Intergenic Intergenic -165420 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 344-143 chr14 82664900 82665157 + 2 NA intron (NR_146650, intron 2 of 5) intron (NR_146650, intron 2 of 5) 22396 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 416-255 chr4 105657341 105657594 + 2 NA intron (NM_001242729, intron 9 of 13) intron (NM_001242729, intron 9 of 13) 51222 NM_020395 57117 Hs.480454 NM_020395 ENSG00000138785 INTS12 INT12|PHF22|SBBI22 integrator complex subunit 12 protein-coding 513-163 chr20 53289512 53289873 + 2 NA intron (NM_173485, intron 2 of 2) L2a|LINE|L2 104409 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 155-36 chr12 94703968 94704079 + 2 NA Intergenic Intergenic -53466 NM_020698 57458 Hs.370410 NM_020698 ENSG00000057704 TMCC3 - transmembrane and coiled-coil domain family 3 protein-coding 338-408 chr5 9963552 9963819 + 2 NA Intergenic Intergenic -59861 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 992-12 chr2 218972509 218973193 + 2 NA Intergenic Intergenic -3433 NR_024385 151300 Hs.420716 NR_015390 LINC00608 - long intergenic non-protein coding RNA 608 ncRNA 353-71 chr10 98946158 98946467 + 2 NA intron (NM_021828, intron 3 of 11) AluJr|SINE|Alu -21744 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 293-121 chr14 75396437 75396618 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -31197 NM_001135047 122953 Hs.196482 NM_130469 ENSG00000140044 JDP2 JUNDM2 Jun dimerization protein 2 protein-coding 338-198 chr16 62441716 62441887 + 2 NA Intergenic L1MB2|LINE|L1 -405363 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 189-32 chr11 103206090 103206262 + 2 NA intron (NM_001377, intron 52 of 88) L2a|LINE|L2 96750 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 330-291 chr2 133473753 133473938 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 94618 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 122-23 chr2 103318740 103318843 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -334362 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 450-66 chr12 88982709 88982984 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 36846 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 268-185 chr2 30599483 30599697 + 2 NA intron (NM_182551, intron 6 of 6) L1P3|LINE|L1 152344 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 258-132 chr14 75913434 75913648 + 2 NA intron (NM_015072, intron 31 of 31) L2b|LINE|L2 68454 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 129-73 chr7 107558951 107559035 + 2 NA intron (NM_181733, intron 1 of 20) intron (NM_181733, intron 1 of 20) -4964 NR_073004 11062 Hs.97627 NM_181581 ENSG00000105865 DUS4L DUS4|PP35 dihydrouridine synthase 4 like protein-coding 269-256 chr3 96796440 96796644 + 2 NA Intergenic L2c|LINE|L2 -18052 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 271-360 chr5 145641166 145641311 + 2 NA Intergenic L1ME3Cz|LINE|L1 194104 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 323-53 chr10 44349525 44349741 + 2 NA Intergenic L2c|LINE|L2 35464 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 334-180 chr15 88687903 88688141 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 49006 NM_001303236 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 312-349 chr3 165078859 165079124 + 2 NA promoter-TSS (NM_001041) promoter-TSS (NM_001041) -495 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 345-365 chr3 167158857 167159070 + 2 NA Intergenic Intergenic 221320 NM_001199202 79740 Hs.478143 NM_024687 ENSG00000169064 ZBBX - zinc finger B-box domain containing protein-coding 451-51 chr13 41485651 41486019 + 2 NA Intergenic L1M1|LINE|L1 28285 NM_014059 28984 Hs.507866 NM_014059 ENSG00000102760 RGCC C13orf15|RGC-32|RGC32|bA157L14.2 regulator of cell cycle protein-coding 259-208 chr2 114259209 114259404 + 2 NA Intergenic Intergenic -183335 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 334-152 chr14 68197036 68197273 + 2 NA intron (NM_133509, intron 7 of 10) L1MB8|LINE|L1 373562 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 410-342 chrX 86772768 86772995 + 2 NA intron (NM_001139515, intron 7 of 11) intron (NM_001139515, intron 7 of 11) 509913 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 273-270 chr21 28140309 28140578 + 2 NA intron (NR_126012, intron 5 of 5) MLT1D|LTR|ERVL-MaLR 50040 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 408-107 chr14 73424372 73424584 + 2 NA intron (NM_001005743, intron 1 of 12) intron (NM_001005743, intron 1 of 12) 34102 NM_001005744 8650 Hs.525443 NM_003744 ENSG00000133961 NUMB C14orf41|S171|c14_5527 NUMB endocytic adaptor protein protein-coding 365-434 chrX 42319576 42319919 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -396193 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 513-196 chr3 191802994 191803331 + 2 NA Intergenic L1MB3|LINE|L1 341999 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 310-561 chr9 119287217 119287483 + 2 NA intron (NM_014618, intron 2 of 7) MIR|SINE|MIR 82085 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 369-301 chr4 124959103 124959466 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -246552 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 318-540 chr8 72255537 72255725 + 2 NA Intergenic L1ME1|LINE|L1 -3997 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 458-103 chr17 74300540 74300831 + 2 NA intron (NM_023036, intron 7 of 13) L1ME4b|LINE|L1 -25541 NM_153209 124602 Hs.372773 NM_153209 ENSG00000196169 KIF19 KIF19A kinesin family member 19 protein-coding 266-447 chr9 30832621 30832839 + 2 NA Intergenic Intergenic -424276 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 516-69 chr14 62253649 62254057 + 2 NA Intergenic MIR|SINE|MIR -113880 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 271-220 chr2 208958392 208958565 + 2 NA Intergenic LOR1-int|LTR|ERV1 415836 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 414-279 chr5 169409281 169409658 + 2 NA Intergenic Intergenic -108330 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 260-14 chr1 106912690 106912854 + 2 NA Intergenic Intergenic 94533 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 380-175 chr2 39896561 39896809 + 2 NA Intergenic (TTCCTC)n|Simple_repeat|Simple_repeat -20949 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 470-213 chr5 57122798 57123146 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -50976 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 209-170 chr2 237147398 237147565 + 2 NA Intergenic L1M4a2|LINE|L1 61592 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 444-7 chr1 75464784 75465151 + 2 NA intron (NM_001320285, intron 2 of 25) L1MA2|LINE|L1 146147 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 384-53 chr11 21008208 21008500 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 338768 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 192-200 chr8 15784840 15785005 + 2 NA Intergenic L1MA7|LINE|L1 244659 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 308-172 chr16 52580063 52580282 + 2 NA intron (NR_033920, intron 2 of 3) MER5A1|DNA|hAT-Charlie 26803 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 573-76 chr17 78564851 78565229 + 2 NA intron (NM_173628, intron 11 of 80) MER31A|LTR|ERV1 12354 NM_173628 8632 Hs.375975 NM_003727 ENSG00000187775 DNAH17 DNAHL1|DNEL2 dynein axonemal heavy chain 17 protein-coding 204-197 chr3 89648907 89649106 + 2 NA Intergenic Intergenic 541385 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 271-328 chr4 175399989 175400224 + 2 NA Intergenic Intergenic 387570 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 262-404 chr7 82339612 82339805 + 2 NA intron (NM_000722, intron 2 of 38) intron (NM_000722, intron 2 of 38) 104069 NM_001302890 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 323-474 chr6 145378147 145378371 + 2 NA Intergenic L1ME4a|LINE|L1 308618 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 355-84 chr11 28392539 28392846 + 2 NA Intergenic L1MB2|LINE|L1 84856 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 313-524 chr8 78949803 78950006 + 2 NA Intergenic L1MA4|LINE|L1 112375 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 354-63 chr10 120750218 120750470 + 2 NA Intergenic Intergenic 100835 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 252-299 chr4 85557651 85557853 + 2 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 82602 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 302-177 chr18 479392 479669 + 2 NA intron (NM_130386, intron 2 of 9) (CT)n|Simple_repeat|Simple_repeat 21171 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 285-152 chr17 47413418 47413572 + 2 NA intron (NM_001195192, intron 20 of 21) intron (NM_001195192, intron 20 of 21) 79125 NR_033934 653479 Hs.537279 NR_033934 MRPL45P2 - mitochondrial ribosomal protein L45 pseudogene 2 pseudo 372-233 chr2 75867206 75867548 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -156462 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 621-65 chr20 15285866 15286387 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 89286 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 163-42 chr13 86599868 86599964 + 2 NA Intergenic Intergenic -312004 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 375-414 chr8 110518675 110518986 + 2 NA Intergenic L1M4|LINE|L1 508603 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 512-74 chr14 22669583 22669961 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -34928 NM_001348233 79549 NM_001348233 ENSG00000255804 OR6J1 OR6J1P|OR6J2 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding 347-264 chr20 37123614 37123890 + 2 NA exon (NM_152503, exon 15 of 25) exon (NM_152503, exon 15 of 25) -27755 NM_002895 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 300-92 chr12 110816956 110817203 + 2 NA Intergenic MIR|SINE|MIR -29908 NM_001286243 160762 Hs.437141 NM_152591 ENSG00000173093 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 529-164 chr4 108512329 108512736 + 2 NA Intergenic Intergenic -44701 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 230-255 chr4 13843493 13843693 + 2 NA intron (NR_121681, intron 3 of 3) MER104|DNA|TcMar-Tc2 188414 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 264-271 chr3 56156116 56156317 + 2 NA intron (NR_132749, intron 4 of 17) intron (NR_132749, intron 4 of 17) -303622 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 364-63 chr10 64335533 64335830 + 2 NA Intergenic Intergenic -489847 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 321-591 chr9 26954849 26955014 + 2 NA TTS (NR_121605) TTS (NR_121605) 1376 NR_121605 101929602 Hs.127665 NR_121605 ENSG00000234676 IFT74-AS1 - IFT74 antisense RNA 1 ncRNA 504-221 chr6 4046260 4046575 + 2 NA intron (NR_146785, intron 6 of 20) L1MC5|LINE|L1 25117 NR_146784 8899 Hs.159014 NM_003913 ENSG00000112739 PRPF4B PR4H|PRP4|PRP4H|PRP4K|dJ1013A10.1 pre-mRNA processing factor 4B protein-coding 659-30 chr14 29070656 29071295 + 2 NA Intergenic L1ME3A|LINE|L1 -285188 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 326-478 chr6 164916500 164916748 + 2 NA Intergenic Intergenic -94561 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 161-4 chr1 87630778 87630875 + 2 NA Intergenic L1MEd|LINE|L1 -259171 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 194-179 chr6 39282598 39282761 + 2 NA Intergenic Intergenic 31740 NM_031460 89822 Hs.162282 NM_031460 ENSG00000124780 KCNK17 K2p17.1|TALK-2|TALK2|TASK-4|TASK4 potassium two pore domain channel subfamily K member 17 protein-coding 326-55 chr10 14779518 14779766 + 2 NA Intergenic Intergenic -4745 NM_001282695 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 350-372 chr4 173253838 173254171 + 2 NA intron (NM_017423, intron 2 of 11) intron (NM_017423, intron 2 of 11) -14156 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 356-44 chr10 27427104 27427380 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -12874 NM_001034842 374308 Hs.631832 NM_001034842 ENSG00000182077 PTCHD3 PTR patched domain containing 3 protein-coding 308-190 chr17 72199880 72200063 + 2 NA Intergenic Intergenic 78951 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 214-190 chr21 18699767 18699965 + 2 NA intron (NR_109925, intron 2 of 3) MER47A|DNA|TcMar-Tigger -13702 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 421-221 chr4 111586657 111587013 + 2 NA Intergenic MIRb|SINE|MIR -558619 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 233-391 chr8 137275413 137275638 + 2 NA Intergenic Intergenic 138063 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 334-16 chr1 78464614 78464930 + 2 NA Intergenic L1PA15|LINE|L1 -26202 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 305-153 chr14 64538712 64538892 + 2 NA intron (NR_110550, intron 1 of 3) intron (NR_110550, intron 1 of 3) 1566 NR_110550 102723809 Hs.667192 NR_110550 ENSG00000259116 LOC102723809 - uncharacterized LOC102723809 ncRNA 286-256 chr20 62932311 62932530 + 2 NA intron (NM_022105, intron 1 of 5) intron (NM_022105, intron 1 of 5) 5484 NM_080797 11083 Hs.517172 NM_022105 ENSG00000101191 DIDO1 BYE1|C20orf158|DATF-1|DATF1|DIDO2|DIDO3|DIO-1|DIO1|dJ885L7.8 death inducer-obliterator 1 protein-coding 405-227 chr4 63184257 63184573 + 2 NA Intergenic AluSx4|SINE|Alu -1022650 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 273-218 chr2 73309712 73309961 + 2 NA Intergenic Intergenic -16288 NM_001965 1961 Hs.3052 NM_001965 ENSG00000135625 EGR4 AT133|NGFI-C|NGFIC|PAT133 early growth response 4 protein-coding 279-250 chr3 30408594 30408823 + 2 NA Intergenic L2a|LINE|L2 -110160 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 242-77 chr12 38388001 38388187 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 71320 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 540-61 chr13 33424766 33425215 + 2 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) -89724 NR_146541 105370154 NR_146541 LINC02344 - long intergenic non-protein coding RNA 2344 ncRNA 371-158 chr2 8974109 8974341 + 2 NA intron (NR_135606, intron 1 of 12) MLT1L|LTR|ERVL-MaLR 29459 NR_135606 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 151-74 chr6 162736482 162736625 + 2 NA intron (NM_001080379, intron 1 of 4) intron (NM_001080379, intron 1 of 4) 8583 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 412-19 chr10 17356740 17356985 + 2 NA intron (NM_001004470, intron 4 of 7) intron (NM_001004470, intron 4 of 7) -30074 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 327-315 chr22 26061273 26061513 + 2 NA Intergenic Intergenic -108069 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 112-34 chr4 4469567 4469664 + 2 NA intron (NM_016930, intron 2 of 10) intron (NM_016930, intron 2 of 10) -7643 NM_001346300 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 317-46 chr10 36376449 36376694 + 2 NA Intergenic L1M4c|LINE|L1 598269 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 321-530 chr7 71277740 71278036 + 2 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) -29786 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 216-259 chr4 123198614 123198760 + 2 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -198108 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 401-52 chr11 54779263 54779536 + 2 NA Intergenic ALR/Alpha|Satellite|centr 72567 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 343-313 chr21 30493533 30493811 + 2 NA Intergenic Intergenic -1659 NM_181609 337970 Hs.60480 NM_181609 ENSG00000244025 KRTAP19-3 GTRHP|KAP19.3 keratin associated protein 19-3 protein-coding 185-116 chr2 212097399 212097556 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 328883 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 581-42 chr14 24564567 24565127 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 11403 NM_001911 1511 Hs.421724 NM_001911 ENSG00000100448 CTSG CATG|CG cathepsin G protein-coding 367-282 chr3 63179221 63179499 + 2 NA Intergenic Intergenic 76672 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 582-163 chr8 137456418 137456872 + 2 NA Intergenic (ATTA)n|Simple_repeat|Simple_repeat -43057 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 229-16 chr1 158872172 158872326 + 2 NA Intergenic Intergenic 40898 NM_002432 4332 Hs.153837 NM_002432 ENSG00000163563 MNDA PYHIN3 myeloid cell nuclear differentiation antigen protein-coding 128-14 chr12 29588577 29588675 + 2 NA intron (NM_001367875, intron 9 of 19) L2a|LINE|L2 -88933 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 289-270 chr20 56454411 56454625 + 2 NA intron (NM_001164116, intron 6 of 6) intron (NM_001164116, intron 6 of 6) -14067 NM_001283037 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 349-520 chr9 96554480 96554796 + 2 NA intron (NR_147239, intron 4 of 14) intron (NR_147239, intron 4 of 14) 12193 NM_001077181 8555 Hs.40582 NM_003671 ENSG00000081377 CDC14B CDC14B3|Cdc14B1|Cdc14B2|hCDC14B cell division cycle 14B protein-coding 540-95 chr17 14090578 14091085 + 2 NA intron (NM_001303, intron 3 of 6) L2b|LINE|L2 21327 NM_001303 1352 Hs.462278 NM_001303 ENSG00000006695 COX10 - cytochrome c oxidase assembly factor heme A:farnesyltransferase COX10 protein-coding 392-12 chr1 168915334 168915607 + 2 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 128529 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 335-7 chr1 65978928 65979121 + 2 NA intron (NM_002600, intron 3 of 16) (ATC)n|Simple_repeat|Simple_repeat -13592 NM_001037340 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 253-19 chr1 164356441 164356618 + 2 NA Intergenic L1MA9|LINE|L1 -202831 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 541-26 chr10 133491567 133491948 + 2 NA Intergenic L1ME1|LINE|L1 -35606 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 283-135 chr14 69944748 69944958 + 2 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -33280 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 378-437 chr8 84086808 84087141 + 2 NA Intergenic L1ME1|LINE|L1 -95813 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 317-112 chr12 94386001 94386191 + 2 NA intron (NM_001368042, intron 3 of 5) Tigger3a|DNA|TcMar-Tigger 73771 NM_001346457 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 333-239 chr2 60030065 60030242 + 2 NA Intergenic Intergenic 352883 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 476-176 chr3 34298623 34299031 + 2 NA Intergenic Intergenic 500197 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 444-288 chrX 57881585 57882013 + 2 NA Intergenic L1MA4|LINE|L1 28834 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 652-72 chr2 240937224 240937721 + 2 NA intron (NM_001351305, intron 14 of 31) L1ME2|LINE|L1 29979 NR_033841 200772 Hs.647893 NR_033841 ENSG00000233392 LOC200772 - uncharacterized LOC200772 ncRNA 260-275 chr3 90630096 90630293 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1522573 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 337-604 chrX 85643897 85644119 + 2 NA Intergenic L1PA16|LINE|L1 -191772 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 306-424 chr6 35363824 35364053 + 2 NA intron (NM_001171819, intron 2 of 6) (TATAT)n|Simple_repeat|Simple_repeat 21380 NM_001171819 5467 Hs.696032 NM_006238 ENSG00000112033 PPARD FAAR|NR1C2|NUC1|NUCI|NUCII|PPARB peroxisome proliferator activated receptor delta protein-coding 262-320 chr4 84942249 84942431 + 2 NA intron (NM_014991, intron 1 of 67) L1M5|LINE|L1 -23276 NR_152772 404201 Hs.46730 NM_205857 ENSG00000180769 WDFY3-AS2 C4orf12|FBI4|NCRNA00247 WDFY3 antisense RNA 2 ncRNA 217-189 chr2 148705023 148705232 + 2 NA intron (NM_015630, intron 2 of 13) L1MC5a|LINE|L1 60376 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 557-35 chr11 100317300 100317666 + 2 NA intron (NM_001243270, intron 20 of 23) intron (NM_001243270, intron 20 of 23) -369805 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 253-171 chr19 36538666 36538842 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -10483 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 258-384 chr8 58547448 58547637 + 2 NA Intergenic HAL1|LINE|L1 -5382 NM_001348340 6386 Hs.200804 NM_005625 ENSG00000137575 SDCBP MDA-9|MDA9|ST1|SYCL|TACIP18 syndecan binding protein protein-coding 357-105 chr14 29710846 29711172 + 2 NA intron (NM_001330069, intron 2 of 18) intron (NM_001330069, intron 2 of 18) 216087 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 216-290 chr5 125187670 125187876 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 150942 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 318-268 chr2 72668563 72668783 + 2 NA intron (NR_135774, intron 6 of 19) L1PA16|LINE|L1 157360 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 337-243 chr2 35104504 35104826 + 2 NA Intergenic Intergenic -366740 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 227-205 chr20 39928695 39928882 + 2 NA Intergenic Intergenic -75673 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 503-215 chr4 66687653 66688117 + 2 NA Intergenic Intergenic 411061 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 339-304 chr20 2743380 2743703 + 2 NA intron (NM_001110514, intron 7 of 17) LTR37B|LTR|ERV1 50663 NM_001110514 57593 Hs.471955 NM_020833 ENSG00000088881 EBF4 COE4|O/E-4 EBF family member 4 protein-coding 548-52 chr12 39420349 39420876 + 2 NA intron (NM_001173464, intron 1 of 37) intron (NM_001173464, intron 1 of 37) 22508 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 426-198 chr4 30752274 30752627 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 32081 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 238-370 chr8 15218960 15219146 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) 19378 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 262-206 chr2 84082997 84083234 + 2 NA Intergenic L2a|LINE|L2 -207567 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 236-164 chr2 50057962 50058127 + 2 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -83841 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 257-332 chr5 120865471 120865690 + 2 NA Intergenic Intergenic 334116 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 123-57 chr8 119624971 119625076 + 2 NA intron (NM_001330600, intron 3 of 25) intron (NM_001330600, intron 3 of 25) 13816 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 634-125 chr5 60940098 60940629 + 2 NA intron (NM_001007234, intron 1 of 5) L1ME1|LINE|L1 4707 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 318-463 chr5 161402382 161402592 + 2 NA intron (NM_000813, intron 6 of 9) HAL1ME|LINE|L1 145637 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 258-441 chrX 97593722 97593941 + 2 NA intron (NM_006729, intron 26 of 26) L1ME4c|LINE|L1 -29296 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 338-363 chr4 324611 324891 + 2 NA Intergenic AluSc8|SINE|Alu -13063 NM_001348279 7700 Hs.654355 NM_003441 ENSG00000131127 ZNF141 D4S90|pHZ-44 zinc finger protein 141 protein-coding 387-171 chr2 82874441 82874787 + 2 NA Intergenic L1PBa|LINE|L1 17811 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 213-131 chr2 26756984 26757194 + 2 NA Intergenic AluSx1|SINE|Alu -7195 NM_017877 54978 Hs.1594 NM_017877 ENSG00000213699 SLC35F6 ANT2BP|C2orf18|TANGO9 solute carrier family 35 member F6 protein-coding 503-156 chr2 123943498 123943846 + 2 NA Intergenic L1MA1|LINE|L1 81502 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 255-103 chr14 33897550 33897748 + 2 NA Intergenic Intergenic 53425 NM_001308103 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 258-39 chr10 4816375 4816622 + 2 NA Intergenic Intergenic -9679 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 310-136 chr14 60687538 60687778 + 2 NA Intergenic Intergenic 36693 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 357-444 chr8 87706639 87706846 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 167273 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 411-160 chr20 22083597 22083995 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 29706 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 385-165 chr2 24553785 24554124 + 2 NA intron (NM_001362952, intron 1 of 23) L1MCc|LINE|L1 -30523 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 329-208 chr16 81242263 81242538 + 2 NA intron (NM_017429, intron 1 of 10) AluSx1|SINE|Alu 3711 NM_017429 53630 Hs.212172 NM_017429 ENSG00000135697 BCO1 BCDO|BCDO1|BCMO|BCMO1|BCO beta-carotene oxygenase 1 protein-coding 337-53 chr10 68408549 68408737 + 2 NA Intergenic AluJb|SINE|Alu -1349 NM_001042417 55680 Hs.653144 NM_017987 ENSG00000204130 RUFY2 RABIP4R|ZFYVE13 RUN and FYVE domain containing 2 protein-coding 511-15 chr1 224470671 224471177 + 2 NA intron (NM_001322302, intron 2 of 6) L1MA3|LINE|L1 36075 NR_136291 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 308-63 chr10 66451819 66452061 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -474096 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 143-43 chr2 115601989 115602065 + 2 NA intron (NM_001321912, intron 6 of 25) MIRc|SINE|MIR 258212 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 242-439 chr9 106069018 106069206 + 2 NA Intergenic MIR|SINE|MIR 374571 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 305-276 chr2 152267074 152267329 + 2 NA Intergenic L1M4c|LINE|L1 -67973 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 364-59 chr10 48911217 48911490 + 2 NA intron (NM_001006939, intron 1 of 1) L1ME4a|LINE|L1 2882 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 365-396 chr8 57312310 57312655 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -31305 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 320-334 chr3 19418580 19418887 + 2 NA intron (NM_144633, intron 7 of 15) intron (NM_144633, intron 7 of 15) -103802 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 436-33 chr10 64771525 64771872 + 2 NA Intergenic Intergenic -53830 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 300-194 chr2 73380444 73380694 + 2 NA Intergenic Intergenic -5189 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 290-33 chr1 225088728 225088938 + 2 NA intron (NM_001367479, intron 21 of 85) L1ME1|LINE|L1 159158 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 309-480 chr6 83755558 83755781 + 2 NA Intergenic L1M1|LINE|L1 46227 NR_136251 105377879 Hs.736886 NR_136251 LOC105377879 - uncharacterized LOC105377879 ncRNA 559-11 chr10 12761799 12762134 + 2 NA intron (NM_001351032, intron 6 of 11) intron (NM_001351032, intron 6 of 11) -36613 NR_031752 100313841 NR_031752 ENSG00000221331 MIR548Q - microRNA 548q ncRNA 311-348 chr3 106429385 106429674 + 2 NA Intergenic Intergenic -560128 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 371-248 chr3 98363459 98363811 + 2 NA Intergenic Intergenic 9781 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 311-491 chr8 35534218 35534402 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -10082 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 537-79 chr16 50415058 50415483 + 2 NA Intergenic FLAM_A|SINE|Alu -20137 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 445-174 chr3 81091044 81091472 + 2 NA intron (NR_132411, intron 1 of 1) MER1A|DNA|hAT-Charlie 97390 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 275-376 chr8 142980320 142980466 + 2 NA Intergenic AluY|SINE|Alu -15435 NR_102426 100128627 NR_102426 CDC42P3 - cell division cycle 42 pseudogene 3 pseudo 344-392 chr5 103076893 103077101 + 2 NA Intergenic L1PA8|LINE|L1 43141 NR_134299 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 210-235 chr5 136360224 136360395 + 2 NA intron (NM_020389, intron 1 of 11) (ACAAA)n|Simple_repeat|Simple_repeat 5167 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 555-173 chr6 60234406 60234864 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1339495 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 364-401 chr6 165868430 165868752 + 2 NA Intergenic L1MA4|LINE|L1 -118960 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 205-232 chr5 152337833 152337958 + 2 NA Intergenic Intergenic 67384 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 565-160 chr6 82211410 82211921 + 2 NA intron (NM_015525, intron 13 of 28).2 intron (NM_015525, intron 13 of 28).2 36079 NM_001300906 25998 Hs.306425 NM_015525 ENSG00000005700 IBTK BTBD26|BTKI inhibitor of Bruton tyrosine kinase protein-coding 203-166 chr4 61788767 61788894 + 2 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 372935 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 274-386 chr8 83428428 83428623 + 2 NA Intergenic Intergenic 24767 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 324-22 chr1 156823182 156823427 + 2 NA intron (NM_001007792, intron 1 of 16) ERVL-E-int|LTR|ERVL -6456 NM_003975 9047 Hs.103527 NM_003975 ENSG00000027869 SH2D2A F2771|SCAP|TSAD|VRAP SH2 domain containing 2A protein-coding 522-152 chr2 212798155 212798495 + 2 NA intron (NR_131941, intron 1 of 4) intron (NR_131941, intron 1 of 4) 2994 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 266-397 chr7 46149801 46150026 + 2 NA Intergenic L1MC3|LINE|L1 -228641 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 437-241 chr6 92877337 92877654 + 2 NA Intergenic L1MA8|LINE|L1 542064 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 445-221 chr5 113255570 113255868 + 2 NA intron (NM_001085377, intron 3 of 18) intron (NM_001085377, intron 3 of 18) 39219 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 253-130 chr14 53314446 53314697 + 2 NA Intergenic L1PB2|LINE|L1 161217 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 334-542 chr8 95634143 95634419 + 2 NA intron (NR_038205, intron 2 of 2) L1PA15|LINE|L1 314067 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 278-259 chr22 33869789 33870004 + 2 NA intron (NM_001362949, intron 1 of 15) intron (NM_001362949, intron 1 of 15) 50532 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 257-270 chr3 102155055 102155222 + 2 NA Intergenic L1MA3|LINE|L1 -8567 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 340-287 chr2 147710398 147710612 + 2 NA Intergenic MIR|SINE|MIR -134012 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 203-5 chr1 57752803 57752948 + 2 NA intron (NM_001353980, intron 3 of 5) MIRb|SINE|MIR -107706 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 282-233 chr2 158545115 158545275 + 2 NA intron (NM_001005476, intron 2 of 20) intron (NM_001005476, intron 2 of 20) 88243 NM_001005476 8502 Hs.407580 NM_003628 ENSG00000144283 PKP4 p0071 plakophilin 4 protein-coding 282-343 chr4 70636875 70637095 + 2 NA promoter-TSS (NM_001368133) promoter-TSS (NM_001368133) -726 NM_001368133 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 342-50 chr1 239713088 239713260 + 2 NA intron (NR_103776, intron 2 of 2) MIR3|SINE|MIR 5945 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 336-247 chr19 39517555 39517819 + 2 NA intron (NR_146916, intron 1 of 3) L2a|LINE|L2 2264 NR_146916 348303 Hs.319284 NM_182704 ENSG00000186838 SELENOV SELV selenoprotein V protein-coding 239-62 chr11 91151483 91151661 + 2 NA Intergenic L1MC1|LINE|L1 -282370 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 544-22 chr1 237174815 237175316 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) 132881 NM_001035 6262 Hs.109514 NM_001035 ENSG00000198626 RYR2 ARVC2|ARVD2|RYR-2|RyR|VTSIP ryanodine receptor 2 protein-coding 357-301 chr4 22930951 22931219 + 2 NA Intergenic Intergenic 216996 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 274-356 chr7 72037424 72037694 + 2 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 299832 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 260-300 chr3 197199218 197199373 + 2 NA intron (NM_001366216, intron 4 of 23) Tigger4b|DNA|TcMar-Tigger -15164 NM_001204387 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 694-84 chr3 40703235 40703728 + 2 NA Intergenic L1MC1|LINE|L1 178521 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 201-214 chr6 27543751 27543916 + 2 NA Intergenic Intergenic -70715 NM_001318891 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 332-257 chr2 107980911 107981099 + 2 NA Intergenic L1ME2z|LINE|L1 -5519 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 305-9 chr1 65849926 65850111 + 2 NA intron (NM_002600, intron 1 of 16) L1MEc|LINE|L1 57123 NM_002600 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 663-91 chr6 47524705 47525202 + 2 NA intron (NM_012120, intron 2 of 17) intron (NM_012120, intron 2 of 17) 47164 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 464-91 chr17 58920816 58921144 + 2 NA intron (NM_014906, intron 1 of 6) L2-3_Crp|LINE|L2 165111 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 232-202 chr2 202991705 202991881 + 2 NA Intergenic Intergenic -23086 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 293-230 chr20 16121475 16121654 + 2 NA Intergenic Intergenic -135682 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 693-98 chr8 58360826 58361297 + 2 NA Intergenic L1MA6|LINE|L1 -50203 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 757-5 chr1 223063619 223064197 + 2 NA Intergenic AluJb|SINE|Alu 79340 NM_003268 7100 Hs.604542 NM_003268 ENSG00000187554 TLR5 MELIOS|SLE1|SLEB1|TIL3 toll like receptor 5 protein-coding 381-69 chr11 3643386 3643677 + 2 NA Intergenic AluSq4|SINE|Alu -1215 NM_001079536 116969 Hs.125680 NM_053017 ENSG00000167311 ART5 ARTC5 ADP-ribosyltransferase 5 protein-coding 268-338 chr6 55060526 55060731 + 2 NA Intergenic L1M2|LINE|L1 -45832 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 369-53 chr11 6064350 6064602 + 2 NA Intergenic L2|LINE|L2 -36735 NM_001001917 120796 Hs.553543 NM_001001917 ENSG00000180934 OR56A1 OR11-75 olfactory receptor family 56 subfamily A member 1 protein-coding 258-136 chr14 97600670 97600871 + 2 NA Intergenic L1ME3E|LINE|L1 85888 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 400-98 chr14 68156579 68156892 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 333143 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 370-57 chr10 82501947 82502310 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -269208 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 301-173 chr18 5924471 5924710 + 2 NA Intergenic CR1_Mam|LINE|CR1 -28636 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 449-276 chr8 101560896 101561294 + 2 NA intron (NM_024915, intron 4 of 15) L1ME1|LINE|L1 68656 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 347-147 chr15 36928157 36928463 + 2 NA intron (NR_051953, intron 8 of 11) (AAC)n|Simple_repeat|Simple_repeat -41777 NR_024264 145845 Hs.302693 NM_001101327 LOC145845 - uncharacterized LOC145845 ncRNA 348-575 chrX 138099102 138099302 + 2 NA Intergenic L1M2|LINE|L1 533075 NM_003413 7547 Hs.111227 NM_003413 ENSG00000156925 ZIC3 HTX|HTX1|VACTERLX|ZNF203 Zic family member 3 protein-coding 420-274 chr7 126057481 126057836 + 2 NA Intergenic Intergenic -793367 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 304-530 chr8 112922063 112922326 + 2 NA intron (NM_001363185, intron 7 of 66) intron (NM_001363185, intron 7 of 66) 278701 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 272-321 chr4 167445203 167445385 + 2 NA Intergenic Intergenic -210704 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 275-30 chr1 246982519 246982751 + 2 NA intron (NR_037894, intron 4 of 6) intron (NR_037894, intron 4 of 6) 25422 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 297-353 chr5 8076706 8076894 + 2 NA Intergenic L1MA6|LINE|L1 207652 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 318-205 chr17 54833294 54833539 + 2 NA Intergenic L1ME3|LINE|L1 -67275 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 317-534 chr9 99661194 99661407 + 2 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 158589 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 248-124 chr15 25074422 25074610 + 2 NA TTS (NR_003325) TTS (NR_003325) 403 NR_003325 100033422 NR_003325 ENSG00000200661 SNORD116-10 HBII-85-10 small nucleolar RNA, C/D box 116-10 snoRNA 282-430 chr7 69024109 69024315 + 2 NA Intergenic LTR37-int|LTR|ERV1 573412 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 302-112 chr13 49218656 49218858 + 2 NA Intergenic L2a|LINE|L2 -1581 NM_001507 2862 Hs.248126 NM_001507 ENSG00000102539 MLNR GPR38|MTLR1 motilin receptor protein-coding 338-358 chr3 182373972 182374215 + 2 NA Intergenic Intergenic 112269 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 210-85 chr15 37368089 37368281 + 2 NA Intergenic MIR|SINE|MIR -266874 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 164-63 chr20 38185179 38185288 + 2 NA Intergenic L1MB8|LINE|L1 -18725 NM_001323316 7052 Hs.517033 NM_004613 ENSG00000198959 TGM2 TG(C)|TGC transglutaminase 2 protein-coding 478-192 chr3 89892820 89893101 + 2 NA Intergenic Intergenic 785339 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 224-74 chr13 84688342 84688558 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -95204 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 765-51 chr5 8876713 8877153 + 2 NA intron (NR_109932, intron 1 of 2) L1MA2|LINE|L1 37201 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 385-157 chr19 37189286 37189549 + 2 NA intron (NM_152279, intron 4 of 4) intron (NM_152279, intron 4 of 4) -16676 NM_152655 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 462-8 chr1 99207093 99207407 + 2 NA Intergenic L1PA16|LINE|L1 -57042 NM_014839 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 323-23 chr1 110887494 110887775 + 2 NA intron (NM_001040033, intron 2 of 8) L1ME1|LINE|L1 14486 NM_000560 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 226-28 chr1 239645009 239645184 + 2 NA intron (NM_001347716, intron 4 of 7) Charlie17b|DNA|hAT-Charlie 16023 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 308-464 chr7 53997011 53997317 + 2 NA Intergenic HAL1|LINE|L1 -185233 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 228-131 chr17 55246740 55246885 + 2 NA Intergenic L1M6|LINE|L1 -18148 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 267-327 chr5 42317106 42317251 + 2 NA Intergenic Intergenic -106261 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 449-209 chr5 57580418 57580700 + 2 NA intron (NR_120607, intron 4 of 5) L2c|LINE|L2 10217 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 379-364 chr8 134426999 134427198 + 2 NA Intergenic AluSx1|SINE|Alu -170973 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 373-149 chr16 78776304 78776533 + 2 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 676764 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 231-9 chr1 69812469 69812662 + 2 NA intron (NM_001370785, intron 4 of 26) intron (NM_001370785, intron 4 of 26) -106757 NR_023916 5301 Hs.654711 NR_023916 ENSG00000229359 PIN1P1 PIN1L peptidylprolyl cis/trans isomerase, NIMA-interacting 1 pseudogene 1 pseudo 368-414 chr7 12532775 12532982 + 2 NA intron (NR_136263, intron 3 of 3) intron (NR_136263, intron 3 of 3) 28481 NR_136263 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 460-45 chr11 41817974 41818327 + 2 NA intron (NR_120584, intron 2 of 5) intron (NR_120584, intron 2 of 5) 103582 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 270-217 chr21 26985937 26986100 + 2 NA Intergenic Intergenic -18930 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 438-146 chr20 31065232 31065483 + 2 NA Intergenic (GGAAT)n|Simple_repeat|Simple_repeat -192307 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 258-396 chr8 91718508 91718752 + 2 NA Intergenic Intergenic 299050 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 362-468 chr9 125733467 125733675 + 2 NA Intergenic Intergenic 12358 NR_122032 51145 Hs.104671 NM_016158 LOC51145 - uncharacterized LOC51145 ncRNA 309-146 chr14 47178618 47178907 + 2 NA intron (NM_001113498, intron 3 of 16) intron (NM_001113498, intron 3 of 16) 164484 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 306-487 chr7 131884460 131884725 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -25628 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 233-256 chr4 44081377 44081527 + 2 NA Intergenic Intergenic 64390 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 217-140 chr16 29992343 29992541 + 2 NA TTS (NM_004783) TTS (NM_004783) 3175 NM_003609 8479 Hs.567370 NM_003609 ENSG00000149929 HIRIP3 - HIRA interacting protein 3 protein-coding 229-45 chr10 106511449 106511618 + 2 NA Intergenic Intergenic 371368 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 637-30 chr12 74173274 74173723 + 2 NA intron (NR_038300, intron 4 of 6) intron (NR_038300, intron 4 of 6) 119133 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 259-318 chr5 66556674 66556851 + 2 NA Intergenic L1MB7|LINE|L1 -39631 NM_001290228 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 381-242 chr3 7820511 7820834 + 2 NA Intergenic Intergenic 195635 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 260-327 chr4 175217177 175217363 + 2 NA Intergenic Intergenic 298912 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 564-68 chr16 22830559 22831031 + 2 NA intron (NM_006043, intron 1 of 1) MER113|DNA|hAT-Charlie 16633 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 218-47 chr11 31551893 31552082 + 2 NA intron (NM_001288725, intron 3 of 10) intron (NM_001288725, intron 3 of 10) 42220 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 394-46 chr10 83753977 83754276 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -77037 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 246-414 chr8 116937830 116938009 + 2 NA promoter-TSS (NM_001025357) promoter-TSS (NM_001025357) -288 NM_001025357 441376 Hs.437551 NM_001025357 ENSG00000205002 AARD C8orf85 alanine and arginine rich domain containing protein protein-coding 256-337 chr5 136489525 136489702 + 2 NA Intergenic L1M4|LINE|L1 -124137 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 433-168 chr3 21740921 21741287 + 2 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 10106 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 222-116 chr14 101349697 101349880 + 2 NA Intergenic L1ME1|LINE|L1 58134 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 324-375 chr3 197735280 197735591 + 2 NA intron (NM_001145642, intron 1 of 20) intron (NM_001145642, intron 1 of 20) 1469 NM_014687 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 rubicon autophagy regulator protein-coding 168-100 chr6 120333447 120333602 + 2 NA Intergenic L1MC2|LINE|L1 318345 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 186-48 chr14 58688306 58688448 + 2 NA Intergenic L1MB7|LINE|L1 49540 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 340-34 chr1 231191149 231191387 + 2 NA intron (NM_001300889, intron 3 of 11) AluJo|SINE|Alu -3641 NM_001256615 149373 Hs.632505 NM_001256615 ENSG00000235710 LOC149373 - uncharacterized LOC149373 protein-coding 201-17 chr1 213643537 213643732 + 2 NA Intergenic L1M5|LINE|L1 -281115 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 629-76 chr20 40066652 40067200 + 2 NA Intergenic L1MA2|LINE|L1 62465 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 217-276 chr4 160755607 160755815 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -977927 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 211-15 chr1 176067196 176067390 + 2 NA intron (NM_022457, intron 11 of 19) LTR1|LTR|ERV1 -98753 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 450-246 chr5 114556280 114556576 + 2 NA intron (NR_130785, intron 3 of 12) L1ME3A|LINE|L1 -19613 NR_134282 101927059 Hs.385789 NR_134282 ENSG00000251542 LINC01957 - long intergenic non-protein coding RNA 1957 ncRNA 336-135 chr12 67489534 67489733 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -30449 NR_103861 100507175 Hs.505986 NR_103861 ENSG00000203585 LINC02408 - long intergenic non-protein coding RNA 2408 ncRNA 268-350 chr6 103114958 103115159 + 2 NA Intergenic Intergenic 1716073 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 300-174 chr19 37124182 37124415 + 2 NA intron (NM_001329519, intron 4 of 4) L1ME1|LINE|L1 45865 NR_138039 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 404-83 chr12 122355468 122355776 + 2 NA intron (NM_198240, intron 5 of 23) AluSz|SINE|Alu -39920 NR_045382 100507066 Hs.624253 NR_045382 CLIP1-AS1 - CLIP1 antisense RNA 1 ncRNA 303-34 chr10 30277382 30277533 + 2 NA Intergenic L1PA8|LINE|L1 65605 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 289-295 chr3 33337907 33338161 + 2 NA intron (NR_146129, intron 4 of 15) L1ME3|LINE|L1 60592 NR_146133 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 212-110 chr15 91641551 91641697 + 2 NA Intergenic Intergenic 178285 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 453-273 chr8 36270543 36270976 + 2 NA Intergenic Intergenic -513615 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 307-406 chr5 159391283 159391534 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 59890 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 335-530 chr8 69384680 69384892 + 2 NA Intergenic L1PA11|LINE|L1 63458 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 243-253 chr20 39558802 39558934 + 2 NA Intergenic L2b|LINE|L2 -334120 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 373-323 chr5 75876404 75876728 + 2 NA Intergenic L1PA14|LINE|L1 -159129 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 1062-2 chr10 115327998 115328710 + 2 NA intron (NM_207303, intron 18 of 28) L1MA6|LINE|L1 234989 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 327-345 chr3 161165058 161165310 + 2 NA Intergenic Intergenic -56106 NM_015938 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 273-149 chr15 94883521 94883658 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 28226 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 372-166 chr15 70405349 70405667 + 2 NA Intergenic MIR3|SINE|MIR 100420 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 331-178 chr15 97121946 97122228 + 2 NA Intergenic L1MC1|LINE|L1 338652 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 329-260 chr2 14179345 14179594 + 2 NA Intergenic Intergenic 221489 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 658-96 chr5 51943297 51943745 + 2 NA Intergenic L1MB7|LINE|L1 -64510 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 335-218 chr19 14912095 14912393 + 2 NA Intergenic MER20|DNA|hAT-Charlie -29245 NM_012377 26658 Hs.589620 NM_012377 ENSG00000127529 OR7C2 CIT-HSP-87M17|OR19-18|OR7C3 olfactory receptor family 7 subfamily C member 2 protein-coding 229-66 chr11 85517155 85517313 + 2 NA intron (NM_001142699, intron 3 of 27) L1MA3|LINE|L1 110036 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 352-228 chr2 43117553 43117903 + 2 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR -15283 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 247-294 chr4 56719886 56720071 + 2 NA Intergenic AluJo|SINE|Alu -38272 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 279-220 chr20 39475286 39475497 + 2 NA Intergenic Intergenic -250643 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 288-343 chr5 132721281 132721512 + 2 NA intron (NM_007054, intron 4 of 16) Helitron3Na_Mam|RC|Helitron 16150 NM_007054 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 284-55 chr10 90426638 90426788 + 2 NA intron (NR_110657, intron 3 of 6) L2c|LINE|L2 114092 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 177-125 chr5 22556495 22556632 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 296781 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 583-77 chr19 12267385 12267810 + 2 NA Intergenic Intergenic 27015 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 387-286 chr5 74308775 74309082 + 2 NA promoter-TSS (NR_105009) promoter-TSS (NR_105009) -603 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 158-30 chr14 67767183 67767308 + 2 NA intron (NM_015346, intron 31 of 41) intron (NM_015346, intron 31 of 41) 49345 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 233-162 chr2 37167643 37167796 + 2 NA TTS (NM_001032377) TTS (NM_001032377) -10672 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 283-89 chr11 127934616 127934821 + 2 NA Intergenic LTR82A|LTR|ERVL -274048 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 290-178 chr18 4208049 4208328 + 2 NA intron (NM_001242761, intron 1 of 11) Tigger16a|DNA|TcMar-Tigger -56414 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 440-209 chr5 141305445 141305835 + 2 NA Intergenic MER41B|LTR|ERV1 -1591 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 181-17 chr10 66196168 66196290 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 624804 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 149-12 chr1 239596220 239596316 + 2 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -32805 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 186-37 chr12 83089976 83090135 + 2 NA intron (NM_152588, intron 11 of 11) intron (NM_152588, intron 11 of 11) 402900 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 161-65 chr3 55975116 55975228 + 2 NA intron (NR_132749, intron 11 of 17) MIR|SINE|MIR -122578 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 396-80 chr12 4989806 4990119 + 2 NA Intergenic Intergenic -53917 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 437-279 chr8 122147217 122147553 + 2 NA Intergenic Intergenic 421259 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 184-129 chr4 157804106 157804252 + 2 NA Intergenic L1ME1|LINE|L1 231689 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 359-41 chr10 7509434 7509786 + 2 NA Intergenic L1MC1|LINE|L1 -98124 NM_001029880 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 487-286 chr8 82537268 82537630 + 2 NA Intergenic Intergenic -374655 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 399-168 chr2 167092360 167092753 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 48399 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 404-224 chr3 193169966 193170337 + 2 NA Intergenic Intergenic -71071 NM_020386 57110 Hs.36761 NM_020386 ENSG00000127252 PLAAT1 A-C1|H-REV107|HRASLS|HRASLS1|HRSL1|HSD28|PLA/AT1|PLAAT-1 phospholipase A and acyltransferase 1 protein-coding 226-152 chr2 17797471 17797614 + 2 NA Intergenic MER33|DNA|hAT-Charlie -18918 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 221-118 chr18 4845489 4845648 + 2 NA Intergenic Intergenic -235614 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 290-35 chr1 229701693 229701838 + 2 NA Intergenic L1MCc|LINE|L1 75518 NM_014777 9816 Hs.533628 NM_014777 ENSG00000135763 URB2 KIAA0133|NET10|NPA2 URB2 ribosome biogenesis homolog protein-coding 630-124 chr7 30665533 30666066 + 2 NA intron (NM_001202481, intron 5 of 13) intron (NM_001202481, intron 5 of 13) 16657 NM_001883 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 563-143 chr4 168956664 168957046 + 2 NA Intergenic MIRb|SINE|MIR 53400 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 213-50 chr11 23168667 23168847 + 2 NA Intergenic Intergenic 250433 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 222-389 chr9 88873667 88873879 + 2 NA Intergenic Intergenic -117090 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 334 chr1 9288593 9288772 + 2 NA Intergenic L2b|LINE|L2 -4212 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 342-391 chr5 30648557 30648750 + 2 NA Intergenic L1ME2z|LINE|L1 -545033 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 234-42 chr10 79390430 79390651 + 2 NA intron (NM_153367, intron 3 of 3) intron (NM_153367, intron 3 of 3) 43071 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 496-122 chr19 11829979 11830353 + 2 NA intron (NM_152357, intron 1 of 3) intron (NM_152357, intron 1 of 3) 15893 NM_152357 126070 Hs.418192 NM_152357 ENSG00000171295 ZNF440 - zinc finger protein 440 protein-coding 216-285 chr5 104637624 104637781 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -461772 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 304-228 chr19 53636229 53636501 + 2 NA intron (NM_001012728, intron 2 of 2) AluSx4|SINE|Alu 4309 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 342-441 chr6 5980956 5981216 + 2 NA Intergenic Intergenic 22958 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 737 chr1 14106324 14106825 + 2 NA Intergenic Intergenic 313399 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 232-102 chr14 73870781 73870981 + 2 NA intron (NM_001371328, intron 3 of 8) intron (NM_001371328, intron 3 of 8) -15978 NM_021188 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 429-206 chr4 25606965 25607322 + 2 NA Intergenic AluSz|SINE|Alu -37797 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 739-61 chr6 61246684 61247129 + 2 NA Intergenic L1PA11|LINE|L1 -327224 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 425-242 chr5 131847699 131847969 + 2 NA intron (NM_001303622, intron 11 of 12) L1MB7|LINE|L1 -50817 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 333-453 chr5 73383552 73383841 + 2 NA Intergenic Intergenic 45790 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 286-316 chr4 60096012 60096227 + 2 NA Intergenic L1MC3|LINE|L1 -826500 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 381-216 chr2 220381937 220382207 + 2 NA Intergenic L1MA2|LINE|L1 -475507 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 547-5 chr1 92523165 92523584 + 2 NA intron (NM_001350198, intron 19 of 19) intron (NM_001350198, intron 19 of 19) -36449 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 352-511 chr7 126893728 126893932 + 2 NA intron (NM_001371085, intron 6 of 10) intron (NM_001371085, intron 6 of 10) 164354 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 194-60 chr14 77332603 77332720 + 2 NA Intergenic Intergenic 8122 NM_001363703 2954 Hs.655292 NM_001513 ENSG00000100577 GSTZ1 GSTZ1-1|MAAI|MAAID|MAI glutathione S-transferase zeta 1 protein-coding 130-82 chr7 139013662 139013762 + 2 NA Intergenic Intergenic 22330 NM_080660 92092 Hs.512833 NM_080660 ENSG00000146858 ZC3HAV1L C7orf39 zinc finger CCCH-type containing, antiviral 1 like protein-coding 207-16 chr1 158779551 158779710 + 2 NA Intergenic Intergenic -1995 NM_001005278 81442 Hs.554487 NM_001005278 ENSG00000188340 OR6N2 OR1-23 olfactory receptor family 6 subfamily N member 2 protein-coding 581-22 chr10 129612838 129613193 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 145774 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 188-18 chr10 58646744 58646918 + 2 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -68184 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 656-29 chr11 77010715 77011267 + 2 NA intron (NM_001300953, intron 6 of 9) HAL1|LINE|L1 -23407 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 185-25 chr10 75608334 75608450 + 2 NA intron (NM_001305581, intron 2 of 6) L1MA9|LINE|L1 -39117 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 466-26 chr10 22452216 22452525 + 2 NA Intergenic Intergenic -14441 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 696-100 chr7 62755917 62756384 + 2 NA Intergenic ALR/Alpha|Satellite|centr 547906 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 208-150 chr20 47411147 47411316 + 2 NA intron (NR_146494, intron 1 of 3) intron (NR_146494, intron 1 of 3) 163 NR_146495 102723442 NR_146494 LINC01754 - long intergenic non-protein coding RNA 1754 ncRNA 474-75 chr13 81753515 81753911 + 2 NA Intergenic L1MEf|LINE|L1 -526730 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 297-133 chr14 51339969 51340222 + 2 NA intron (NR_038358, intron 1 of 4) MLT1C|LTR|ERVL-MaLR 6702 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 451-79 chr14 88453657 88454088 + 2 NA Intergenic Intergenic 68215 NM_018418 55812 Hs.525518 NM_018418 ENSG00000042317 SPATA7 HEL-S-296|HSD-3.1|HSD3|LCA3 spermatogenesis associated 7 protein-coding 177-8 chr1 147446807 147446925 + 2 NA intron (NR_038423, intron 3 of 3) intron (NR_038423, intron 3 of 3) 71009 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 385-20 chr10 8614434 8614748 + 2 NA Intergenic X7B_LINE|LINE|CR1 -20200 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 360-325 chr4 45256853 45257045 + 2 NA Intergenic Intergenic -530315 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 334-35 chr1 191971991 191972176 + 2 NA Intergenic Intergenic -186379 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 461-297 chrX 71844321 71844646 + 2 NA Intergenic L1MEg|LINE|L1 -60105 NR_034005 441501 Hs.641282 NR_034005 LINC00891 - long intergenic non-protein coding RNA 891 ncRNA 340-166 chr15 37690206 37690436 + 2 NA Intergenic LTR67B|LTR|ERVL -244286 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 296-423 chr6 156471335 156471568 + 2 NA Intergenic Intergenic 92701 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 234-307 chr5 33779870 33780031 + 2 NA intron (NM_001324511, intron 2 of 2) L1MA9|LINE|L1 112040 NM_001324511 81792 Hs.12680 NM_030955 ENSG00000151388 ADAMTS12 PRO4389 ADAM metallopeptidase with thrombospondin type 1 motif 12 protein-coding 227-222 chr3 5489736 5489884 + 2 NA Intergenic Intergenic -239555 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 218-247 chr4 86514434 86514620 + 2 NA Intergenic MER65A|LTR|ERV1 28025 NR_039657 100616463 NR_039657 ENSG00000266515 MIR4452 - microRNA 4452 ncRNA 330-80 chr11 2083081 2083285 + 2 NA Intergenic L1PA13|LINE|L1 51026 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 346-500 chr8 127765707 127765918 + 2 NA Intergenic Intergenic -28721 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 348-361 chr4 64951030 64951271 + 2 NA intron (NR_033976, intron 2 of 6) MSTB1|LTR|ERVL-MaLR 53350 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 389-260 chr4 47528015 47528367 + 2 NA intron (NM_020453, intron 5 of 22) L1PB4|LINE|L1 42916 NM_020453 57205 Hs.437241 NM_020453 ENSG00000145246 ATP10D ATPVD ATPase phospholipid transporting 10D (putative) protein-coding 377-314 chr5 25844049 25844300 + 2 NA Intergenic L1MA8|LINE|L1 653221 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 352-199 chr18 68527128 68527438 + 2 NA Intergenic Intergenic 187825 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 266-164 chr19 58274642 58274805 + 2 NA intron (NM_001320782, intron 6 of 6) Charlie1b|DNA|hAT-Charlie -4232 NM_021089 7554 Hs.590941 NM_021089 ENSG00000278129 ZNF8 HF.18|Zfp128 zinc finger protein 8 protein-coding 747-64 chr7 111630072 111630667 + 2 NA Intergenic L1MA4A|LINE|L1 -67852 NM_001350963 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 649-90 chr5 117387438 117387915 + 2 NA Intergenic L1M4|LINE|L1 -27836 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 348-168 chr16 25889858 25890085 + 2 NA intron (NM_006040, intron 1 of 1) THE1B|LTR|ERVL-MaLR -135266 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 450-328 chr9 119086880 119087169 + 2 NA Intergenic Intergenic 282411 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 342-198 chr17 72767046 72767321 + 2 NA intron (NM_001352692, intron 6 of 9) LTR19A|LTR|ERV1 -126711 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 346-274 chr2 213717533 213717828 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -40387 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 473-66 chr12 117636167 117636510 + 2 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -274536 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 246-380 chr7 93403601 93403778 + 2 NA Intergenic L1M2|LINE|L1 79166 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 442-174 chr22 34263207 34263544 + 2 NA Intergenic Intergenic -340487 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 308-129 chr13 77663960 77664180 + 2 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -1267 NM_001310140 100129307 NM_001310140 LOC100129307 - putative UPF0607 protein ENSP00000383144 protein-coding 202-202 chr5 30194011 30194168 + 2 NA Intergenic Intergenic 313529 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 256-405 chr8 21582247 21582410 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 206547 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 339-215 chr17 72533932 72534215 + 2 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 58731 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 336-190 chr16 10640343 10640528 + 2 NA intron (NM_144674, intron 5 of 6) intron (NM_144674, intron 5 of 6) 54495 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 572-117 chr4 12587901 12588309 + 2 NA Intergenic Intergenic 364654 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 259-266 chr3 177108486 177108700 + 2 NA intron (NM_001321194, intron 1 of 16) intron (NM_001321194, intron 1 of 16) 87885 NM_001321193 79718 Hs.714201 NM_024665 ENSG00000177565 TBL1XR1 C21|DC42|IRA1|MRD41|TBLR1 transducin beta like 1 X-linked receptor 1 protein-coding 226-126 chr17 53728231 53728379 + 2 NA Intergenic L1MA6|LINE|L1 -94622 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 285-462 chr9 93710337 93710605 + 2 NA Intergenic Intergenic -108886 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 371-89 chr12 126623178 126623395 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 67032 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 506-6 chr1 76222531 76222792 + 2 NA intron (NM_001349108, intron 1 of 3) L1PA3|LINE|L1 147915 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 251-171 chr2 78028153 78028381 + 2 NA intron (NR_110288, intron 1 of 3) L1MC1|LINE|L1 -60463 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 183-74 chr2 49335135 49335294 + 2 NA Intergenic MER113|DNA|hAT-Charlie -180687 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 531-59 chr14 48924023 48924444 + 2 NA Intergenic Intergenic 662147 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 269-108 chr13 113784610 113784850 + 2 NA intron (NM_182614, intron 3 of 8) HERVFH19-int|LTR|ERV1 25487 NM_001348663 348013 Hs.280805 NM_182614 ENSG00000184497 TMEM255B FAM70B transmembrane protein 255B protein-coding 348-416 chr5 91524807 91525091 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 -141632 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 187-72 chr18 25681557 25681676 + 2 NA Intergenic MIR|SINE|MIR -329450 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 160-29 chr14 41307978 41308121 + 2 NA Intergenic Intergenic -298807 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 287-325 chr5 106830577 106830769 + 2 NA intron (NR_104671, intron 2 of 3) L2|LINE|L2 180341 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 248-401 chr8 86671329 86671535 + 2 NA intron (NM_019098, intron 3 of 17) MLT1E2|LTR|ERVL-MaLR 72243 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 233-52 chr11 2082473 2082637 + 2 NA Intergenic L1M5|LINE|L1 51654 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 569-87 chr2 5760987 5761527 + 2 NA Intergenic Intergenic 51339 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 246-142 chr16 60020189 60020350 + 2 NA intron (NR_110917, intron 1 of 3) L1PB4|LINE|L1 164916 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 343-342 chr3 86309789 86310082 + 2 NA Intergenic L1MA8|LINE|L1 -172008 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 544-177 chr5 50978701 50979167 + 2 NA Intergenic Intergenic -8747 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 555-164 chr5 101593309 101593794 + 2 NA Intergenic L1M4b|LINE|L1 -690269 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 494-294 chr8 118451365 118451735 + 2 NA intron (NM_001101676, intron 2 of 4) MIRc|SINE|MIR -169451 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 359-432 chr6 116460490 116460839 + 2 NA promoter-TSS (NM_001010919) promoter-TSS (NM_001010919) -711 NM_001010919 441168 Hs.381220 NM_001010919 ENSG00000188820 CALHM6 C6orf187|FAM26F|INAM|dJ93H18.5 calcium homeostasis modulator family member 6 protein-coding 431-277 chr7 113956698 113956964 + 2 NA Intergenic L1PA13|LINE|L1 -37822 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 388-254 chr4 88308324 88308589 + 2 NA intron (NR_134237, intron 1 of 3) L1M1|LINE|L1 23526 NR_134238 105369192 Hs.733660 NR_134236 ENSG00000246375 PPM1K-DT - PPM1K divergent transcript ncRNA 429-9 chr1 100849327 100849746 + 2 NA Intergenic Intergenic 45306 NM_001033025 2135 Hs.357637 NM_001439 ENSG00000162694 EXTL2 EXTR2 exostosin like glycosyltransferase 2 protein-coding 903-36 chr8 14417289 14417896 + 2 NA intron (NM_001322881, intron 2 of 6) LOR1b|LTR|ERV1 435918 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 252-129 chr15 64686287 64686516 + 2 NA TTS (NM_015042) TTS (NM_015042) 16880 NM_002537 4947 Hs.744924 NM_002537 ENSG00000180304 OAZ2 AZ2 ornithine decarboxylase antizyme 2 protein-coding 290-26 chr1 179102868 179103117 + 2 NA 3' UTR (NM_005158, exon 12 of 12) 3' UTR (NM_005158, exon 12 of 12) 20922 NM_022371 64222 Hs.584957 NM_022371 ENSG00000186283 TOR3A ADIR|ADIR2 torsin family 3 member A protein-coding 225-388 chr9 71716024 71716184 + 2 NA intron (NM_013390, intron 14 of 23) intron (NM_013390, intron 14 of 23) 52409 NM_001349784 23670 Hs.494146 NM_013390 ENSG00000135048 CEMIP2 TMEM2 cell migration inducing hyaluronidase 2 protein-coding 316-474 chr6 17451154 17451364 + 2 NA intron (NM_001363534, intron 3 of 11) intron (NM_001363534, intron 3 of 11) 57664 NM_006366 10486 Hs.132902 NM_006366 ENSG00000112186 CAP2 - cyclase associated actin cytoskeleton regulatory protein 2 protein-coding 166-28 chr14 52413238 52413359 + 2 NA Intergenic L1MA8|LINE|L1 98986 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 325-312 chr20 46044042 46044269 + 2 NA intron (NM_020708, intron 11 of 25) intron (NM_020708, intron 11 of 25) 14940 NM_020708 57468 Hs.21413 NM_020708 ENSG00000124140 SLC12A5 EIEE34|EIG14|KCC2|hKCC2 solute carrier family 12 member 5 protein-coding 251-276 chr4 136018977 136019167 + 2 NA Intergenic L1MC2|LINE|L1 -105392 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 263-273 chr4 1104064 1104285 + 2 NA intron (NR_159500, intron 1 of 4) intron (NR_159500, intron 1 of 4) 9390 NM_001366919 285498 Hs.248290 NM_194439 ENSG00000178222 RNF212 ZHP3 ring finger protein 212 protein-coding 284-209 chr2 133148150 133148427 + 2 NA intron (NM_207481, intron 5 of 17) intron (NM_207481, intron 5 of 17) -117907 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 309-62 chr10 92763216 92763519 + 2 NA Intergenic AluSx|SINE|Alu -63464 NM_001013848 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 276-226 chr2 69605652 69605827 + 2 NA intron (NM_014911, intron 2 of 21) L1MD2|LINE|L1 38000 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 519-115 chr2 135362757 135363125 + 2 NA intron (NM_001286569, intron 3 of 21) L1MC4|LINE|L1 167644 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 608-53 chr17 51951662 51952082 + 2 NA intron (NM_001082533, intron 3 of 9) intron (NM_001082533, intron 3 of 9) 206842 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 317-191 chr17 61650454 61650648 + 2 NA Intergenic L1MEf|LINE|L1 -59332 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 206-237 chr6 68534305 68534472 + 2 NA Intergenic Intergenic 99936 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 421-103 chr16 83839219 83839570 + 2 NA Intergenic Intergenic 31416 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 122-19 chr15 58274000 58274087 + 2 NA Intergenic L1MEg|LINE|L1 135662 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 296-254 chr2 202958978 202959182 + 2 NA intron (NM_001352678, intron 7 of 13) intron (NM_001352678, intron 7 of 13) 46805 NM_001282910 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 338-555 chr8 113481151 113481416 + 2 NA Intergenic MER51A|LTR|ERV1 -44344 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 229-343 chr6 145121148 145121351 + 2 NA Intergenic L1ME3A|LINE|L1 565628 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 211-255 chr6 6339023 6339226 + 2 NA Intergenic MIR3|SINE|MIR -18433 NM_000129 2162 Hs.335513 NM_000129 ENSG00000124491 F13A1 F13A coagulation factor XIII A chain protein-coding 279-46 chr10 63887844 63888027 + 2 NA Intergenic L1M6|LINE|L1 -366045 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 349-258 chr2 81816131 81816348 + 2 NA Intergenic Intergenic -349293 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 320-487 chr6 64401740 64401972 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 595020 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 529-53 chr12 110793568 110793897 + 2 NA Intergenic Intergenic -50841 NM_002710 5501 Hs.79081 NM_002710 ENSG00000186298 PPP1CC PP-1G|PP1C|PPP1G protein phosphatase 1 catalytic subunit gamma protein-coding 461-175 chr3 101339926 101340231 + 2 NA intron (NM_020654, intron 16 of 23) intron (NM_020654, intron 16 of 23) -19503 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 526-212 chr6 51463425 51463868 + 2 NA Intergenic Intergenic -158224 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 158-85 chr4 83960912 83961026 + 2 NA Intergenic Intergenic 338200 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 308-330 chr4 49092789 49092957 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 106231 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 419-291 chr8 85490447 85490797 + 2 NA Intergenic L1PB1|LINE|L1 -25707 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 522-55 chr11 102149457 102149963 + 2 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 37262 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 303-81 chr11 128383726 128383899 + 2 NA Intergenic Intergenic 138498 NM_001330451 2113 Hs.369438 NM_005238 ENSG00000134954 ETS1 ETS-1|EWSR2|c-ets-1|p54 ETS proto-oncogene 1, transcription factor protein-coding 244-209 chr22 23059394 23059544 + 2 NA TTS (NM_014433) TTS (NM_014433) -11050 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 595-63 chr16 83806098 83806582 + 2 NA Intergenic MIRb|SINE|MIR -1638 NM_001537 3281 Hs.250899 NM_001537 ENSG00000230989 HSBP1 NPC-A-13 heat shock factor binding protein 1 protein-coding 398-326 chr7 55332342 55332727 + 2 NA Intergenic Intergenic -32914 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 201-154 chr3 50059157 50059311 + 2 NA intron (NM_001349194, intron 7 of 17) intron (NM_001349194, intron 7 of 17) -29685 NR_036627 10181 Hs.439480 NM_005778 ENSG00000003756 RBM5 G15|H37|LUCA-15|LUCA15|RMB5 RNA binding motif protein 5 protein-coding 377-26 chr1 188863841 188864152 + 2 NA Intergenic L1M1|LINE|L1 1420368 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 328-205 chr17 11956098 11956289 + 2 NA intron (NM_001372, intron 67 of 68) L1MEf|LINE|L1 41179 NM_144680 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 125-65 chr7 54787198 54787282 + 2 NA intron (NR_110040, intron 2 of 2) intron (NR_110040, intron 2 of 2) 27927 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 264-227 chr2 203725586 203725762 + 2 NA intron (NM_001243078, intron 1 of 2) intron (NM_001243078, intron 1 of 2) 19035 NM_001243077 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 117-22 chr2 135170127 135170209 + 2 NA 3' UTR (NM_012233, exon 24 of 24) 3' UTR (NM_012233, exon 24 of 24) 33540 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 417-234 chr6 19000211 19000589 + 2 NA Intergenic Intergenic 180080 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 353-311 chr3 1058476 1058818 + 2 NA Intergenic L1PA7|LINE|L1 -34377 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 377-162 chr17 72200157 72200518 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 79317 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 350-452 chr6 138151527 138151770 + 2 NA Intergenic L1MA4|LINE|L1 -10291 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 561-205 chr8 113244984 113245373 + 2 NA intron (NM_001363185, intron 3 of 66) L1MB8|LINE|L1 131974 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 272-179 chr2 33403937 33404169 + 2 NA Intergenic MER34C_|LTR|ERV1 -14463 NR_039628 100616136 NR_039628 ENSG00000283591 MIR4430 - microRNA 4430 ncRNA 373-48 chr10 39089621 39089966 + 2 NA Intergenic ALR/Alpha|Satellite|centr 393197 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 345-33 chr1 190917573 190917772 + 2 NA Intergenic MIR|SINE|MIR 292782 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 302-94 chr12 2080583 2080823 + 2 NA intron (NM_199460, intron 1 of 49).2 L1MEd|LINE|L1 27418 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 818-19 chr14 45313209 45313858 + 2 NA Intergenic Intergenic -60331 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 381-368 chr7 132608797 132609003 + 2 NA intron (NM_181775, intron 2 of 4) intron (NM_181775, intron 2 of 4) -32336 NM_020911 91584 Hs.511454 NM_020911 ENSG00000221866 PLXNA4 FAYV2820|PLEXA4|PLXNA4A|PLXNA4B|PRO34003 plexin A4 protein-coding 240-282 chr3 30840361 30840489 + 2 NA intron (NM_207359, intron 8 of 14) intron (NM_207359, intron 8 of 14) 54236 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 273-226 chr2 98610785 98610999 + 2 NA exon (NM_001330353, exon 3 of 6) exon (NM_001330353, exon 3 of 6) 2303 NM_001330353 25972 Hs.13370 NM_014044 ENSG00000115446 UNC50 GMH1|HSD23|PDLs22|UNCL|URP unc-50 inner nuclear membrane RNA binding protein protein-coding 659-134 chrX 76931787 76932202 + 2 NA intron (NR_110403, intron 1 of 3) MIRc|SINE|MIR -12634 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 246-256 chr3 77354995 77355169 + 2 NA intron (NM_001290039, intron 2 of 26) L1ME1|LINE|L1 257070 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 407-219 chr4 48217647 48217912 + 2 NA intron (NM_003215, intron 2 of 17) L1MC4|LINE|L1 52059 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 247-169 chr18 66378616 66378856 + 2 NA Intergenic Intergenic 225354 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 213-7 chr1 79703532 79703721 + 2 NA Intergenic L1MA9|LINE|L1 -696896 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 521-149 chr21 29833032 29833454 + 2 NA intron (NM_000830, intron 1 of 16) MSTA-int|LTR|ERVL-MaLR 85068 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 612-38 chr14 44622927 44623425 + 2 NA Intergenic Intergenic 115767 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 316-288 chr2 125740667 125740964 + 2 NA Intergenic L1MA9|LINE|L1 377170 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 333-618 chrX 40891562 40891837 + 2 NA Intergenic L1MC|LINE|L1 -58503 NR_027761 100132831 Hs.729923 NR_027761 LOC100132831 - A20-binding inhibitor of NF-kappaB activation 2 pseudogene pseudo 309-347 chr3 72035811 72035993 + 2 NA non-coding (NR_104116, exon 7 of 7) non-coding (NR_104116, exon 7 of 7) 64553 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 459-14 chr1 115802367 115802729 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -33743 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 380-165 chr19 14877994 14878220 + 2 NA Intergenic Intergenic 3248 NM_030901 26333 Hs.247717 NM_030901 ENSG00000185385 OR7A17 BC85395_4|HTPCRX19 olfactory receptor family 7 subfamily A member 17 protein-coding 312-98 chr12 23309508 23309739 + 2 NA Intergenic L1ME3Cz|LINE|L1 133987 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 464-272 chrX 54125865 54126305 + 2 NA intron (NM_001300788, intron 9 of 13) L1MD2|LINE|L1 57169 NM_001300788 54954 Hs.86045 NM_017848 ENSG00000184083 FAM120C CXorf17|ORF34 family with sequence similarity 120C protein-coding 383-112 chr14 61879408 61879746 + 2 NA intron (NM_001367656, intron 1 of 7) L2|LINE|L2 -48118 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 543-195 chr5 20205310 20205755 + 2 NA intron (NM_001291956, intron 2 of 14) L1MA4|LINE|L1 -100019 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 330-466 chr6 135863971 135864251 + 2 NA intron (NM_018945, intron 1 of 12) L1ME3B|LINE|L1 12410 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 382-365 chr6 133726687 133727021 + 2 NA intron (NR_109982, intron 4 of 8) L1M3d|LINE|L1 -94293 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 265-175 chr2 39822179 39822335 + 2 NA Intergenic Intergenic -42981 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 618-50 chr18 73396229 73396762 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 71554 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 195-177 chr4 171851476 171851660 + 2 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -37961 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 334-354 chr3 101245216 101245545 + 2 NA intron (NM_016247, intron 12 of 18) intron (NM_016247, intron 12 of 18) 75195 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 656-19 chr10 44613325 44613962 + 2 NA Intergenic L1MB4|LINE|L1 -228546 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 226-379 chr9 70930841 70930997 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -61867 NM_206948 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 276-3 chr1 13896568 13896708 + 2 NA Intergenic Intergenic 147223 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 317-431 chr6 148889946 148890178 + 2 NA intron (NM_005715, intron 2 of 7) intron (NM_005715, intron 2 of 7) 74622 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 499-112 chr2 22776023 22776380 + 2 NA Intergenic L1MC5|LINE|L1 239722 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 335-335 chr3 14691815 14692144 + 2 NA intron (NM_001184957, intron 5 of 16) L1MA3|LINE|L1 16838 NM_032137 84077 Hs.661452 NM_032137 ENSG00000131379 C3orf20 - chromosome 3 open reading frame 20 protein-coding 332-387 chr4 133127601 133127842 + 2 NA intron (NR_125885, intron 7 of 8) MLT1J|LTR|ERVL-MaLR 21395 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 227-42 chr10 66206570 66206720 + 2 NA intron (NM_001127384, intron 13 of 17) Kanga2_a|DNA|TcMar-Tc2 635220 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 586-26 chr11 21800114 21800531 + 2 NA Intergenic Intergenic -392763 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 439-91 chr14 66872639 66872948 + 2 NA intron (NM_001024218, intron 4 of 21) AluSq|SINE|Alu -316647 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 448-53 chr12 3899327 3899608 + 2 NA Intergenic Intergenic -26019 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 358-388 chr5 153205236 153205470 + 2 NA Intergenic Intergenic -233004 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 441-212 chr5 153535429 153535787 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 43436 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 328-32 chr1 199889719 199890031 + 2 NA Intergenic Intergenic -137835 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 204-292 chr8 121997544 121997710 + 2 NA Intergenic Intergenic -356187 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 243-380 chr6 37998887 37999067 + 2 NA intron (NM_021943, intron 2 of 5) L1MC3|LINE|L1 179250 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 324-77 chr11 2713989 2714233 + 2 NA intron (NM_181798, intron 11 of 15) intron (NM_181798, intron 11 of 15) -14113 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 392-127 chr18 69201186 69201439 + 2 NA Intergenic Intergenic -199576 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 364-338 chr5 35114766 35115033 + 2 NA intron (NR_037910, intron 1 of 7) intron (NR_037910, intron 1 of 7) 3223 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 207-230 chr4 177623404 177623551 + 2 NA Intergenic L1ME3A|LINE|L1 -105280 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 585-23 chr11 39005433 39005882 + 2 NA Intergenic Intergenic 356799 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 387-301 chr5 162599945 162600260 + 2 NA Intergenic L1PA16|LINE|L1 532460 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 335-64 chr10 67382617 67382891 + 2 NA intron (NM_001127384, intron 5 of 17) MSTB|LTR|ERVL-MaLR 20656 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 272-243 chr20 52512465 52512684 + 2 NA Intergenic LTR52|LTR|ERVL -108264 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 337-185 chr15 97409851 97410068 + 2 NA intron (NR_120324, intron 3 of 4) intron (NR_120324, intron 3 of 4) 111852 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 370-177 chr17 19800294 19800652 + 2 NA intron (NM_014683, intron 16 of 26) intron (NM_014683, intron 16 of 26) -52175 NM_001330150 218 Hs.531682 NM_000691 ENSG00000108602 ALDH3A1 ALDH3|ALDHIII aldehyde dehydrogenase 3 family member A1 protein-coding 204-248 chr6 36955102 36955297 + 2 NA intron (NM_001199159, intron 2 of 7) MIRc|SINE|MIR 461 NM_153370 221476 Hs.25391 NM_153370 ENSG00000164530 PI16 CD364|CRISP9|MSMBBP|PSPBP peptidase inhibitor 16 protein-coding 244-283 chr4 187217548 187217707 + 2 NA Intergenic L1MD2|LINE|L1 15641 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 353-37 chr1 222158926 222159222 + 2 NA Intergenic Intergenic -180554 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 391-32 chr10 30204164 30204543 + 2 NA Intergenic AluSz6|SINE|Alu -7499 NR_120653 101929279 Hs.559153 NR_120653 LOC101929279 - uncharacterized LOC101929279 ncRNA 375-275 chr3 183842263 183842471 + 2 NA non-coding (NR_136893, exon 6 of 10) non-coding (NR_136893, exon 6 of 10) -16790 NM_024871 79929 Hs.478465 NM_024871 ENSG00000180834 MAP6D1 MAPO6D1|SL21 MAP6 domain containing 1 protein-coding 333-71 chr10 108965901 108966142 + 2 NA Intergenic Intergenic -896728 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 347-386 chr5 35170749 35171009 + 2 NA intron (NM_000949, intron 1 of 9) L2a|LINE|L2 -52757 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 382-345 chr5 145649944 145650312 + 2 NA Intergenic L1MEg|LINE|L1 185214 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 279-422 chr8 119330161 119330344 + 2 NA Intergenic Intergenic 5081 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 651-19 chr10 76271803 76272289 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 489285 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 731-58 chr5 92619708 92620371 + 2 NA Intergenic L1PA8|LINE|L1 951304 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 307-102 chr12 39893441 39893635 + 2 NA intron (NM_052885, intron 4 of 9) AluSx|SINE|Alu 212543 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 555-62 chr15 100949060 100949413 + 2 NA intron (NM_024652, intron 2 of 33) L1MB8|LINE|L1 29879 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 306-267 chr2 229236249 229236445 + 2 NA intron (NM_001330158, intron 1 of 3) intron (NM_001330158, intron 1 of 3) -4255 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 860-40 chr5 103968859 103969539 + 2 NA Intergenic Intergenic -406410 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 349-230 chr19 41069509 41069803 + 2 NA Intergenic L1PA15|LINE|L1 -18795 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 344-227 chr2 16423136 16423418 + 2 NA Intergenic Intergenic 242557 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 581-152 chr6 159189067 159189419 + 2 NA intron (NM_032532, intron 1 of 22) intron (NM_032532, intron 1 of 22) -19236 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 252-369 chr6 61582547 61582675 + 2 NA intron (NR_146870, intron 14 of 15) L1M4|LINE|L1 8481 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 247-53 chr11 22213308 22213517 + 2 NA intron (NM_001142649, intron 3 of 21) L1MC3|LINE|L1 20236 NM_213599 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 253-169 chr19 28340614 28340773 + 2 NA Intergenic L1PA16|LINE|L1 -265995 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 299-287 chr3 88724512 88724720 + 2 NA Intergenic Intergenic -383005 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 397-158 chr2 80984393 80984717 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 482391 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 499-94 chr18 12788003 12788326 + 2 NA intron (NM_080423, intron 8 of 8) intron (NM_080423, intron 8 of 8) -38742 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 210-269 chr7 46493648 46493818 + 2 NA Intergenic Intergenic 203389 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 187-15 chr1 174904381 174904541 + 2 NA intron (NM_001366451, intron 5 of 12) L1M3f|LINE|L1 28943 NM_001035230 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 565-110 chr22 43672065 43672493 + 2 NA exon (NM_022785, exon 14 of 32) exon (NM_022785, exon 14 of 32) 140026 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 414-177 chr2 211672447 211672701 + 2 NA intron (NM_001042599, intron 14 of 26) intron (NM_001042599, intron 14 of 26) 753786 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 141-68 chr4 74759074 74759192 + 2 NA intron (NM_001316963, intron 2 of 4) intron (NM_001316963, intron 2 of 4) 35390 NM_001316963 685 Hs.591704 NM_001729 ENSG00000174808 BTC - betacellulin protein-coding 171-105 chr5 104984453 104984555 + 2 NA Intergenic L1MA1|LINE|L1 -114970 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 335-341 chr3 28896715 28896976 + 2 NA Intergenic L1MB7|LINE|L1 321567 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 339-162 chr14 62660694 62660897 + 2 NA Intergenic L1MA8|LINE|L1 384663 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 228-88 chr13 86953249 86953392 + 2 NA Intergenic MER65C|LTR|ERV1 41400 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 415-306 chr9 116608866 116609204 + 2 NA intron (NM_014010, intron 18 of 21) L1MEc|LINE|L1 78180 NM_198186 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 230-241 chr3 140091794 140091954 + 2 NA intron (NM_022131, intron 1 of 16) L2b|LINE|L2 156689 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 300-89 chr12 65571460 65571715 + 2 NA intron (NR_120434, intron 3 of 4) intron (NR_120434, intron 3 of 4) -14276 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 617-115 chr5 174496408 174496949 + 2 NA intron (NR_125806, intron 2 of 5) intron (NR_125806, intron 2 of 5) 160324 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 181-92 chr3 67212015 67212110 + 2 NA Intergenic Intergenic -13402 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 543-8 chr1 90563764 90564142 + 2 NA Intergenic Intergenic -93797 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 223-320 chr7 83983312 83983464 + 2 NA intron (NM_006080, intron 13 of 16) intron (NM_006080, intron 13 of 16) 211401 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 240-66 chr10 116179568 116179754 + 2 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 15128 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 401-18 chr1 234032271 234032561 + 2 NA intron (NM_173508, intron 2 of 7) L1PB1|LINE|L1 127740 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 453-132 chr2 195164767 195165215 + 2 NA Intergenic HAL1|LINE|L1 434396 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 388-207 chr22 22237218 22237536 + 2 NA Intergenic Intergenic -7409 NM_001303509 7441 Hs.247979 NM_007128 ENSG00000169575 VPREB1 CD179a|IGI|IGVPB|VPREB V-set pre-B cell surrogate light chain 1 protein-coding 350-446 chr6 115256655 115256876 + 2 NA Intergenic L1MA3|LINE|L1 387070 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 286-236 chr2 219808834 219809109 + 2 NA Intergenic L1MA8|LINE|L1 95918 NR_146975 105373889 Hs.570066 NR_146975 ENSG00000228909 LINC01803 - long intergenic non-protein coding RNA 1803 ncRNA 506-98 chr15 95500752 95501113 + 2 NA intron (NR_027132, intron 5 of 6) intron (NR_027132, intron 5 of 6) 67839 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 533-163 chr4 98876464 98876921 + 2 NA 3' UTR (NM_001130679, exon 8 of 8) 3' UTR (NM_001130679, exon 8 of 8) 52441 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 431-113 chr19 44533156 44533534 + 2 NA Intergenic Intergenic -3670 NM_001102600 125931 Hs.689632 NM_198444 ENSG00000273777 CEACAM20 UNQ9366 carcinoembryonic antigen related cell adhesion molecule 20 protein-coding 370-219 chr2 30700001 30700288 + 2 NA Intergenic L1ME1|LINE|L1 107302 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 354-332 chr4 66202842 66203069 + 2 NA Intergenic Intergenic -73869 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 362-168 chr15 61264618 61264885 + 2 NA Intergenic L1MC4|LINE|L1 -35449 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 162-7 chr1 154402350 154402451 + 2 NA TTS (NR_147855) TTS (NR_147855) -2793 NM_001206866 3570 Hs.135087 NM_000565 ENSG00000160712 IL6R CD126|IL-6R-1|IL-6RA|IL6Q|IL6RA|IL6RQ|gp80 interleukin 6 receptor protein-coding 440-243 chr8 64848960 64849346 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -50416 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 242-195 chr2 122237065 122237194 + 2 NA Intergenic L1MA9|LINE|L1 481478 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 537-59 chr13 78039419 78039829 + 2 NA intron (NR_047028, intron 5 of 5) L2c|LINE|L2 -15231 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 484-254 chr7 131256928 131257258 + 2 NA intron (NM_001145354, intron 2 of 18) L1M4b|LINE|L1 70686 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 359-10 chr1 67986309 67986548 + 2 NA intron (NR_040077, intron 1 of 9) intron (NR_040077, intron 1 of 9) 65203 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 189-200 chr8 51621051 51621204 + 2 NA intron (NM_144651, intron 2 of 22) intron (NM_144651, intron 2 of 22) 188318 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 277-275 chr3 152810743 152810994 + 2 NA Intergenic Intergenic -24263 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 365-267 chr3 144181008 144181325 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 208085 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 355-130 chr12 52256432 52256695 + 2 NA intron (NR_146088, intron 1 of 8) intron (NR_146088, intron 1 of 8) 1945 NR_146088 85349 Hs.584773 NR_146088 ENSG00000135477 KRT87P HBD|KRT121P|KRTHBP4|psihHbD keratin 87 pseudogene pseudo 366-246 chr20 1064975 1065282 + 2 NA Intergenic L2a|LINE|L2 -48101 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 172-125 chr7 56008471 56008609 + 2 NA Intergenic LTR8A|LTR|ERV1 42904 NM_001370519 5723 Hs.512656 NM_004577 ENSG00000146733 PSPH PSP|PSPHD phosphoserine phosphatase protein-coding 137-88 chr8 20986568 20986644 + 2 NA intron (NR_033894, intron 3 of 4) L1MD1|LINE|L1 12620 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 224-32 chr10 52350392 52350541 + 2 NA Intergenic Intergenic 36185 NM_012242 22943 Hs.40499 NM_012242 ENSG00000107984 DKK1 DKK-1|SK dickkopf WNT signaling pathway inhibitor 1 protein-coding 526-269 chr9 129302347 129302693 + 2 NA Intergenic L1ME2|LINE|L1 -18496 NR_149714 414318 Hs.449434 NR_149714 C9orf106 - chromosome 9 open reading frame 106 (putative) ncRNA 362-444 chr8 109476253 109476468 + 2 NA intron (NM_177531, intron 51 of 77) intron (NM_177531, intron 51 of 77) -63340 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 346-144 chr14 82609454 82609646 + 2 NA Intergenic Intergenic -33082 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 366-253 chr20 54580067 54580277 + 2 NA intron (NM_018431, intron 2 of 7) L1PA7|LINE|L1 104579 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 178-145 chr8 90287400 90287500 + 2 NA intron (NR_051989, intron 2 of 3) intron (NR_051989, intron 2 of 3) 65962 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 239-391 chr8 15931184 15931327 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 255017 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 204-37 chr11 18271847 18271975 + 2 NA Intergenic Intergenic 5647 NM_199161 6288 Hs.632144 NM_000331 ENSG00000173432 SAA1 PIG4|SAA|SAA2|TP53I4 serum amyloid A1 protein-coding 309-315 chr21 21055396 21055604 + 2 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 57091 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 295-80 chr11 90799523 90799805 + 2 NA intron (NR_104190, intron 3 of 6) AluJb|SINE|Alu 69538 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 293-234 chr21 15392373 15392531 + 2 NA Intergenic L1PA16|LINE|L1 -327452 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 306-457 chr7 20169545 20169797 + 2 NA intron (NM_182762, intron 2 of 6) MIRc|SINE|MIR 27755 NR_046756 100874041 Hs.145104 NR_046756 ENSG00000228598 MACC1-AS1 - MACC1 antisense RNA 1 ncRNA 515-129 chr2 164015003 164015382 + 2 NA Intergenic Intergenic -279184 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 466-119 chr2 20794425 20794746 + 2 NA intron (NR_104233, intron 1 of 4) L1M5|LINE|L1 28516 NM_001282720 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 284-44 chr10 66007292 66007566 + 2 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 436004 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 200-21 chr1 223638009 223638146 + 2 NA intron (NM_001143962, intron 2 of 20) MER2|DNA|TcMar-Tigger 27624 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 209-313 chr8 36436351 36436497 + 2 NA Intergenic Intergenic -347950 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 360-291 chr3 13908284 13908495 + 2 NA Intergenic L1PB2|LINE|L1 -24667 NR_036481 100132526 Hs.637770 NR_036481 ENSG00000275340 FGD5P1 - FYVE, RhoGEF and PH domain containing 5 pseudogene 1 pseudo 397-125 chr18 13999763 14000133 + 2 NA Intergenic Intergenic -84241 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 411-212 chr4 123048316 123048686 + 2 NA intron (NM_001345856, intron 11 of 15) L1MA4|LINE|L1 125423 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 340-402 chr4 65205481 65205753 + 2 NA Intergenic L1ME4a|LINE|L1 -201117 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 287-324 chr5 105273803 105273989 + 2 NA Intergenic Intergenic 174422 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 295-353 chr4 97260800 97260999 + 2 NA Intergenic Intergenic -106027 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 603-134 chr5 141147982 141148455 + 2 NA Intergenic (AATCA)n|Simple_repeat|Simple_repeat -1804 NM_018939 56130 Hs.283085 NM_018939 ENSG00000113211 PCDHB6 PCDH-BETA6 protocadherin beta 6 protein-coding 337-573 chr9 27516286 27516464 + 2 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -7939 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 300-459 chr8 72589776 72589958 + 2 NA intron (NM_004770, intron 2 of 2) MER20B|DNA|hAT-Charlie 52642 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 276-330 chr4 54350866 54351022 + 2 NA intron (NR_147160, intron 1 of 1) intron (NR_147160, intron 1 of 1) 18052 NR_147160 105377656 Hs.157697 NR_147160 LINC02283 - long intergenic non-protein coding RNA 2283 ncRNA 283-321 chr4 58990176 58990333 + 2 NA intron (NR_133941, intron 1 of 2) L1PA13|LINE|L1 -2100 NR_133940 105377245 Hs.112674 NR_133939 ENSG00000249382 LINC02619 - long intergenic non-protein coding RNA 2619 ncRNA 590-182 chrX 75399310 75399724 + 2 NA intron (NM_001146256, intron 9 of 10) L1PA14|LINE|L1 123520 NM_001146257 158866 Hs.253211 NM_144969 ENSG00000102383 ZDHHC15 DHHC15|MRX91 zinc finger DHHC-type containing 15 protein-coding 344-267 chr2 241587544 241587736 + 2 NA intron (NM_001164356, intron 4 of 4) L1MB7|LINE|L1 -28497 NR_033346 100379249 Hs.621128 NR_033346 BOK-AS1 BOK-AS|BOKAS|NAToB|NCRNA00151 BOK antisense RNA 1 ncRNA 351-408 chr6 9414385 9414646 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 762306 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 227-321 chr6 122078257 122078456 + 2 NA Intergenic MER21B|LTR|ERVL -321195 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 417-69 chr13 54773869 54774235 + 2 NA Intergenic Intergenic -400402 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 551-161 chr5 92518066 92518461 + 2 NA Intergenic Intergenic 1053080 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 245-175 chr19 46165615 46165776 + 2 NA Intergenic HERVL32-int|LTR|ERVL 17457 NM_001135113 147920 Hs.99376 NM_001002915 ENSG00000204866 IGFL2 UNQ645|VPRI645 IGF like family member 2 protein-coding 330-237 chr19 29174943 29175214 + 2 NA Intergenic L1MA2|LINE|L1 38073 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 247-127 chr15 54352016 54352152 + 2 NA intron (NM_001329919, intron 16 of 31) intron (NM_001329919, intron 16 of 31) 339436 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 350-342 chr4 39685939 39686194 + 2 NA Intergenic L1PA13|LINE|L1 -12070 NM_001312647 3093 Hs.50308 NM_005339 ENSG00000078140 UBE2K E2-25K|HIP2|HYPG|LIG|UBC1 ubiquitin conjugating enzyme E2 K protein-coding 407-205 chr3 109653995 109654263 + 2 NA Intergenic L1PA7|LINE|L1 51301 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 224-112 chr17 33532253 33532446 + 2 NA intron (NR_037584, intron 2 of 2) L2b|LINE|L2 1411 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 485-138 chr2 103333384 103333707 + 2 NA Intergenic Intergenic -349116 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 324-86 chr11 42552661 42552879 + 2 NA Intergenic MLT2C1|LTR|ERVL -299080 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 267-78 chr12 15051751 15052007 + 2 NA Intergenic Intergenic 50046 NR_120466 101928340 Hs.401232 NR_120466 ENSG00000255727 LINC01489 - long intergenic non-protein coding RNA 1489 ncRNA 254-275 chr4 59297109 59297286 + 2 NA Intergenic Intergenic 283624 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 247-99 chr13 43486458 43486665 + 2 NA intron (NM_001347965, intron 1 of 15) intron (NM_001347965, intron 1 of 15) 37709 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 338-457 chr5 166818023 166818222 + 2 NA Intergenic Intergenic 108248 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 226-145 chr19 37416613 37416832 + 2 NA intron (NM_001330482, intron 4 of 4) intron (NM_001330482, intron 4 of 4) 45623 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 506-241 chr5 135878944 135879335 + 2 NA intron (NR_146141, intron 6 of 8) intron (NR_146141, intron 6 of 8) 16702 NM_000590 3578 Hs.960 NM_000590 ENSG00000145839 IL9 HP40|IL-9|P40 interleukin 9 protein-coding 236-296 chr5 127621124 127621311 + 2 NA Intergenic MER72|LTR|ERV1 -27804 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 195-193 chr5 39467597 39467769 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -42450 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 425-126 chr19 40943906 40944165 + 2 NA intron (NR_001278, intron 6 of 8) AluSz6|SINE|Alu 19770 NR_001278 1556 Hs.529117 NR_001278 ENSG00000256612 CYP2B7P CYP2B|CYP2B7|CYP2B7P1 cytochrome P450 family 2 subfamily B member 7, pseudogene pseudo 253-72 chr11 40592533 40592710 + 2 NA intron (NM_020929, intron 2 of 4) MIRc|SINE|MIR -299491 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 437-84 chr15 34690190 34690433 + 2 NA Intergenic L1MEc|LINE|L1 -34547 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 205-59 chr11 104557646 104557805 + 2 NA Intergenic L1M4a2|LINE|L1 51577 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 314-369 chr3 34621895 34622187 + 2 NA Intergenic L1MB4|LINE|L1 771982 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 457-172 chr4 10987851 10988275 + 2 NA Intergenic L1PA11|LINE|L1 -303295 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 400-104 chr15 24007671 24008048 + 2 NA intron (NR_126392, intron 4 of 5) intron (NR_126392, intron 4 of 5) 32712 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 315-524 chrX 63565787 63566089 + 2 NA Intergenic L1MB8|LINE|L1 -4843 NR_152609 92249 Hs.31532 NR_015353 ENSG00000235437 LINC01278 - long intergenic non-protein coding RNA 1278 ncRNA 339-322 chr20 46227972 46228268 + 2 NA intron (NM_021248, intron 3 of 11) intron (NM_021248, intron 3 of 11) 80378 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 384-293 chr5 65099210 65099520 + 2 NA Intergenic Intergenic 330435 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 415-196 chr4 49098391 49098695 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 111901 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 300-14 chr1 106557389 106557592 + 2 NA Intergenic L1MA3|LINE|L1 -260749 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 262-221 chr2 128842991 128843229 + 2 NA Intergenic L1PB4|LINE|L1 -21490 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 351-249 chr2 198976067 198976292 + 2 NA Intergenic L1PB3|LINE|L1 481760 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 269-152 chr17 11322056 11322209 + 2 NA intron (NM_001173461, intron 2 of 3) L1MEf|LINE|L1 80709 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 458-16 chr1 246973727 246974035 + 2 NA intron (NM_001204221, intron 4 of 5) intron (NM_001204221, intron 4 of 5) 34176 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 435-223 chr6 164089741 164090139 + 2 NA Intergenic Intergenic -418456 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 608-81 chr2 213129573 213130001 + 2 NA intron (NM_001371277, intron 3 of 6) L2a|LINE|L2 20650 NM_016260 22807 Hs.604950 NM_016260 ENSG00000030419 IKZF2 ANF1A2|HELIOS|ZNF1A2|ZNFN1A2 IKAROS family zinc finger 2 protein-coding 494-299 chr8 133762379 133762668 + 2 NA Intergenic Intergenic 14829 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 284-10 chr1 81622662 81622878 + 2 NA intron (NM_001366008, intron 3 of 26) AluJr4|SINE|Alu -65068 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 322-485 chr7 39118846 39119100 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -105406 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 188-194 chr7 106273013 106273138 + 2 NA intron (NM_005746, intron 3 of 10) intron (NM_005746, intron 3 of 10) 11908 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 124-44 chr21 23216899 23217009 + 2 NA Intergenic Intergenic 137670 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 299-324 chr4 62857292 62857517 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -695639 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 473-42 chr10 122319616 122320027 + 2 NA intron (NM_001318189, intron 10 of 15) L1ME1|LINE|L1 48525 NM_144587 118663 Hs.422466 NM_144587 ENSG00000138152 BTBD16 C10orf87 BTB domain containing 16 protein-coding 774-94 chr9 90633143 90633530 + 2 NA intron (NM_017594, intron 1 of 1) L2|LINE|L2 9488 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 181-160 chr8 100419436 100419578 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 36744 NR_039681 100616451 NR_039681 ENSG00000265599 MIR4471 - microRNA 4471 ncRNA 236-259 chr4 89993824 89994023 + 2 NA Intergenic Intergenic 99069 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 438-43 chr10 127211383 127211735 + 2 NA intron (NM_001290223, intron 27 of 51) intron (NM_001290223, intron 27 of 51) -14968 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 301-489 chr9 107308759 107309011 + 2 NA intron (NM_001244724, intron 4 of 9) intron (NM_001244724, intron 4 of 9) 24116 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 244-106 chr15 27396175 27396385 + 2 NA intron (NM_001270873, intron 5 of 5) L1ME1|LINE|L1 -234961 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 348-143 chr14 66793341 66793566 + 2 NA intron (NM_001024218, intron 3 of 21) L1M4b|LINE|L1 286046 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 364-4 chr1 34579949 34580212 + 2 NA Intergenic L2a|LINE|L2 89614 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 324-580 chrX 67959044 67959276 + 2 NA Intergenic MIRb|SINE|MIR 414537 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 282-57 chr10 108014663 108014871 + 2 NA intron (NR_125760, intron 4 of 4) intron (NR_125760, intron 4 of 4) 54526 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 286-274 chr3 43797434 43797682 + 2 NA Intergenic L1MDb|LINE|L1 -105964 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 346-436 chr6 114774395 114774636 + 2 NA Intergenic Intergenic -711638 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 379-74 chr12 79084889 79085123 + 2 NA intron (NM_005639, intron 3 of 10) Tigger4|DNA|TcMar-Tigger 39314 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 155-86 chr6 37861986 37862068 + 2 NA intron (NM_021943, intron 1 of 5) intron (NM_021943, intron 1 of 5) 42300 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 486-305 chr9 25270315 25270681 + 2 NA Intergenic Intergenic 408360 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 303-225 chr2 151109910 151110070 + 2 NA Intergenic L1MB3|LINE|L1 151873 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 324-453 chr6 34631787 34632104 + 2 NA intron (NM_022758, intron 2 of 3) L1ME4a|LINE|L1 -64209 NR_134625 101929243 Hs.643498 NR_134625 ENSG00000272288 LOC101929243 - uncharacterized LOC101929243 ncRNA 244-306 chr5 108957771 108957912 + 2 NA intron (NR_146155, intron 12 of 19) MIR|SINE|MIR 33235 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 319-534 chr8 89386584 89386868 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 370985 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 467-30 chr10 59115879 59116241 + 2 NA Intergenic Intergenic 60404 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 393-296 chr5 176683968 176684249 + 2 NA Intergenic L1MEf|LINE|L1 36624 NM_001366491 26262 Hs.532129 NM_012171 ENSG00000048140 TSPAN17 FBX23|FBXO23|TM4SF17 tetraspanin 17 protein-coding 413-129 chr19 37426273 37426492 + 2 NA intron (NM_152484, intron 3 of 5) intron (NM_152484, intron 3 of 5) 41062 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 383-204 chr2 178822945 178823235 + 2 NA Intergenic Intergenic -15667 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 134-66 chr5 16073306 16073410 + 2 NA intron (NM_001102562, intron 3 of 3) intron (NM_001102562, intron 3 of 3) 106433 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 239-322 chr5 92535063 92535247 + 2 NA Intergenic Intergenic 1036188 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 199-108 chr2 45110677 45110815 + 2 NA Intergenic Intergenic -101294 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 243-240 chr2 167851071 167851281 + 2 NA intron (NM_020981, intron 1 of 1) intron (NM_020981, intron 1 of 1) 32504 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 222-3 chr1 37168386 37168538 + 2 NA Intergenic L1MB7|LINE|L1 6899 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 388-89 chr12 118606395 118606702 + 2 NA Intergenic Intergenic 155131 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 358-19 chr1 181526852 181527133 + 2 NA intron (NM_001205293, intron 3 of 47) intron (NM_001205293, intron 3 of 47) 43475 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 384-171 chr2 82670398 82670676 + 2 NA Intergenic L1MA5A|LINE|L1 -186266 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 322-542 chr8 118250996 118251214 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -139286 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 342-185 chr16 82310072 82310387 + 2 NA Intergenic Intergenic -140005 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 301-378 chr5 144111582 144111738 + 2 NA Intergenic L1MA5|LINE|L1 58999 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 279-238 chr22 23739002 23739193 + 2 NA 3' UTR (NM_021916, exon 2 of 2) 3' UTR (NM_021916, exon 2 of 2) 12015 NM_021916 7621 Hs.382874 NM_021916 ENSG00000187792 ZNF70 Cos17 zinc finger protein 70 protein-coding 625-126 chr9 8284472 8284838 + 2 NA Intergenic Intergenic 449291 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 323-503 chr7 64913855 64914044 + 2 NA intron (NM_021148, intron 1 of 3) intron (NM_021148, intron 1 of 3) 10707 NR_003099 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 216-246 chr4 57810007 57810179 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR 384221 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 187-160 chr7 49858926 49859109 + 2 NA intron (NR_136188, intron 2 of 3) L1ME3E|LINE|L1 83684 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 668-29 chr14 61021799 61022305 + 2 NA intron (NR_033344, intron 5 of 16) MIR3|SINE|MIR -40362 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 342-187 chr17 11965257 11965586 + 2 NA intron (NM_001372, intron 68 of 68) L1M4|LINE|L1 31951 NM_144680 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 282-479 chr9 29057292 29057490 + 2 NA intron (NM_001354574, intron 1 of 5) L1ME1|LINE|L1 154908 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 350-332 chr3 182467154 182467418 + 2 NA intron (NR_040105, intron 2 of 3) L1ME5|LINE|L1 19076 NR_040105 401103 Hs.591304 NR_040105 ENSG00000241098 LINC01994 - long intergenic non-protein coding RNA 1994 ncRNA 382-133 chr16 72044272 72044560 + 2 NA Intergenic Intergenic -10089 NM_005143 3240 Hs.513711 NM_005143 ENSG00000257017 HP BP|HP2ALPHA2|HPA1S haptoglobin protein-coding 414-308 chr7 53901954 53902336 + 2 NA Intergenic L2a|LINE|L2 -90214 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 225-207 chr3 74515103 74515274 + 2 NA intron (NM_020872, intron 1 of 21) intron (NM_020872, intron 1 of 21) 5952 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 570-11 chr1 166892811 166893212 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -16747 NM_053053 117143 Hs.435967 NM_053053 ENSG00000152382 TADA1 ADA1|HFI1|STAF42|TADA1L|hADA1 transcriptional adaptor 1 protein-coding 344-291 chr21 30705416 30705615 + 2 NA Intergenic L1PA15|LINE|L1 13262 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 275-202 chr2 114854488 114854691 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -21041 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 320-82 chr11 42118676 42118984 + 2 NA Intergenic L1PA15|LINE|L1 -33372 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 324-393 chr4 72088224 72088505 + 2 NA intron (NM_001144756, intron 2 of 4) intron (NM_001144756, intron 2 of 4) 49232 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 397-297 chr7 17172489 17172808 + 2 NA Intergenic L1MEc|LINE|L1 -126004 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 188-130 chr3 63750214 63750393 + 2 NA Intergenic Intergenic -68996 NM_001355236 132200 Hs.506386 NM_001355236 ENSG00000163632 C3orf49 - chromosome 3 open reading frame 49 protein-coding 249-123 chr14 72849631 72849852 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 42908 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 380-30 chr1 187559403 187559622 + 2 NA Intergenic L1PA10|LINE|L1 115884 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 187-61 chr16 52618562 52618689 + 2 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -11650 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 283-419 chr7 51163430 51163596 + 2 NA intron (NM_015198, intron 5 of 12) intron (NM_015198, intron 5 of 12) 153296 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 365-140 chr16 51448328 51448575 + 2 NA Intergenic Intergenic -297179 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 316-608 chrX 88497640 88497909 + 2 NA Intergenic Intergenic -249451 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 408-233 chr4 60455315 60455599 + 2 NA Intergenic Intergenic -467162 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 339-313 chr20 20913182 20913477 + 2 NA Intergenic Intergenic 193029 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 342-571 chrX 88925399 88925640 + 2 NA Intergenic Intergenic 178294 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 212-186 chr20 23503197 23503374 + 2 NA Intergenic L1MD|LINE|L1 12168 NM_005492 10047 Hs.121602 NM_005492 ENSG00000125815 CST8 CRES|CTES5 cystatin 8 protein-coding 514-71 chr13 53966429 53966781 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 151186 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 491-108 chr2 5800200 5800662 + 2 NA Intergenic Intergenic 12165 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 146-2 chr1 53868911 53869010 + 2 NA intron (NR_036639, intron 7 of 11) intron (NR_036639, intron 7 of 11) 20837 NM_018982 54432 Hs.11923 NM_018982 ENSG00000058799 YIPF1 DJ167A19.1|FinGER1 Yip1 domain family member 1 protein-coding 306-391 chr5 36146220 36146463 + 2 NA intron (NM_001007527, intron 1 of 17) MLT1E3|LTR|ERVL-MaLR 1647 NR_030306 693165 NR_030306 ENSG00000207756 MIR580 MIRN580|hsa-mir-580 microRNA 580 ncRNA 375-458 chr9 107932235 107932514 + 2 NA Intergenic MIRb|SINE|MIR -442605 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 497-278 chr8 86303354 86303729 + 2 NA Intergenic Intergenic -39006 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 344-294 chr22 16791343 16791604 + 2 NA intron (NM_001318251, intron 3 of 3) L1MA8|LINE|L1 30226 NM_175878 150165 Hs.356069 NM_175878 ENSG00000172967 XKR3 XRG3|XTES XK related 3 protein-coding 257-113 chr14 68799829 68799999 + 2 NA Intergenic L1ME1|LINE|L1 -3671 NM_001244701 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 366-483 chrX 70114266 70114499 + 2 NA Intergenic AluSx|SINE|Alu -19065 NM_001370193 3476 Hs.496267 NM_001551 ENSG00000089289 IGBP1 ALPHA-4|IBP1 immunoglobulin binding protein 1 protein-coding 235-283 chr5 55281966 55282148 + 2 NA intron (NR_144325, intron 11 of 26) AluSq|SINE|Alu 25637 NR_144324 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 270-65 chr11 102822645 102822877 + 2 NA intron (NR_038390, intron 4 of 7) L2a|LINE|L2 20848 NM_002422 4314 Hs.375129 NM_002422 ENSG00000149968 MMP3 CHDS6|MMP-3|SL-1|STMY|STMY1|STR1 matrix metallopeptidase 3 protein-coding 300-466 chr8 83266441 83266614 + 2 NA Intergenic L2a|LINE|L2 -137231 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 451-262 chrX 132851366 132851655 + 2 NA intron (NM_001077188, intron 3 of 5) MIRb|SINE|MIR 109860 NM_001077188 90161 Hs.385956 NM_147175 ENSG00000171004 HS6ST2 MRXSPM heparan sulfate 6-O-sulfotransferase 2 protein-coding 337-421 chr4 175110854 175111033 + 2 NA Intergenic L1M2|LINE|L1 192585 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 245-123 chr14 50482829 50483069 + 2 NA intron (NM_198794, intron 5 of 31) intron (NM_198794, intron 5 of 31) 49620 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 465-224 chr5 45135212 45135540 + 2 NA Intergenic L2a|LINE|L2 326429 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 179-6 chr10 78124256 78124428 + 2 NA Intergenic Intergenic 90479 NM_001142285 6229 Hs.280130 NM_001026 ENSG00000138326 RPS24 DBA3|S24|eS24 ribosomal protein S24 protein-coding 296-51 chr10 65785572 65785837 + 2 NA Intergenic L1M5|LINE|L1 214279 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 338-423 chr5 35477446 35477734 + 2 NA Intergenic Intergenic -140273 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 346-514 chr8 142883529 142883803 + 2 NA Intergenic L1MA8|LINE|L1 -3846 NM_000497 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 207-48 chr11 4923183 4923359 + 2 NA TTS (NM_001005237) TTS (NM_001005237) 1068 NM_001005237 79324 Hs.554541 NM_001005237 ENSG00000278870 OR51G1 OR11-29|OR51G3P olfactory receptor family 51 subfamily G member 1 (gene/pseudogene) protein-coding 252-379 chr6 139355082 139355239 + 2 NA Intergenic L1PA13|LINE|L1 19053 NM_001168389 10370 Hs.82071 NM_006079 ENSG00000164442 CITED2 ASD8|MRG-1|MRG1|P35SRJ|VSD2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 protein-coding 200-54 chr12 41096520 41096663 + 2 NA Intergenic Intergenic -91729 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 267-326 chr5 34967016 34967216 + 2 NA Intergenic L1M2|LINE|L1 37523 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 594-166 chr9 107056970 107057525 + 2 NA intron (NR_126029, intron 4 of 4) MLT1J1|LTR|ERVL-MaLR 45741 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 292-54 chr10 84238718 84238978 + 2 NA intron (NM_015613, intron 1 of 3) L2c|LINE|L2 2698 NM_015613 26103 Hs.226000 NM_015613 ENSG00000148602 LRIT1 FIGLER9|LRRC21|PAL leucine rich repeat, Ig-like and transmembrane domains 1 protein-coding 443-292 chr8 82935514 82935758 + 2 NA intron (NR_134295, intron 2 of 3) intron (NR_134295, intron 2 of 3) 23532 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 244-330 chr6 148382475 148382702 + 2 NA intron (NM_001346506, intron 1 of 20) AluSx1|SINE|Alu 39750 NM_001346506 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 392-338 chr8 128284394 128284658 + 2 NA Intergenic Intergenic 134410 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 992-3 chr11 58124747 58125646 + 2 NA intron (NM_001005212, intron 2 of 2) intron (NM_001005212, intron 2 of 2) -5752 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 246-434 chr9 88166751 88166950 + 2 NA Intergenic Intergenic -28369 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 930-4 chr10 61226851 61227522 + 2 NA Intergenic L1MCb|LINE|L1 210911 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 403-330 chrX 8012619 8012978 + 2 NA Intergenic Intergenic -85059 NM_001172672 8228 Hs.264 NM_004650 ENSG00000006757 PNPLA4 DXS1283E|GS2|iPLA2eta patatin like phospholipase domain containing 4 protein-coding 284-75 chr11 99765598 99765775 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 209541 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 208-107 chr2 493574 493752 + 2 NA Intergenic Intergenic -1008 NR_146436 727944 NR_146436 ENSG00000223985 LINC01874 - long intergenic non-protein coding RNA 1874 ncRNA 204-118 chr17 52284077 52284209 + 2 NA Intergenic AluJr4|SINE|Alu -106379 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 294-225 chr2 114104725 114104909 + 2 NA Intergenic L1MB7|LINE|L1 -124833 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 297-318 chr4 32018987 32019234 + 2 NA intron (NR_134682, intron 1 of 3) intron (NR_134682, intron 1 of 3) 3312 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 375-30 chr1 242497112 242497400 + 2 NA intron (NM_001320272, intron 2 of 10) MIR3|SINE|MIR 27440 NM_152666 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 296-449 chr7 121935019 121935186 + 2 NA intron (NM_001206839, intron 2 of 28) L1MA8|LINE|L1 61941 NM_002851 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 289-496 chr9 133292096 133292279 + 2 NA Intergenic HUERS-P1-int|LTR|ERV1 -16986 NM_020469 28 Hs.654423 NM_020469 ENSG00000175164 ABO A3GALNT|A3GALT1|GTB|NAGAT ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase protein-coding 283-68 chr10 108631998 108632181 + 2 NA Intergenic Intergenic -562796 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 301-436 chr8 24712473 24712728 + 2 NA Intergenic Intergenic -163982 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 175-172 chr8 117576259 117576357 + 2 NA Intergenic AluSp|SINE|Alu 55595 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 286-123 chr14 65572826 65572998 + 2 NA intron (NM_178156, intron 2 of 9) L1MC|LINE|L1 101810 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 622-75 chr2 234461296 234461693 + 2 NA Intergenic Intergenic -6899 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 442-304 chr8 137842631 137843024 + 2 NA intron (NR_161374, intron 2 of 7) LTR16C|LTR|ERVL 240718 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 363-77 chr11 42730069 42730345 + 2 NA Intergenic Intergenic -476517 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 311-130 chr14 43883296 43883496 + 2 NA Intergenic Intergenic 623887 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 281-46 chr10 83943159 83943320 + 2 NA Intergenic L2|LINE|L2 -196270 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 283-484 chrX 151868217 151868391 + 2 NA Intergenic L1MEc|LINE|L1 42779 NR_136578 105373368 Hs.256904 NR_136578 MAGEA4-AS1 - MAGEA4 antisense RNA 1 ncRNA 191-38 chr12 15649020 15649188 + 2 NA intron (NM_004447, intron 14 of 20) intron (NM_004447, intron 14 of 20) 102493 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 436-87 chr14 83043898 83044284 + 2 NA Intergenic L1MA9|LINE|L1 401459 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 318-207 chr17 61535440 61535717 + 2 NA Intergenic Intergenic 55641 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 476-247 chr6 162414276 162414629 + 2 NA intron (NM_004562, intron 2 of 11) AluY|SINE|Alu -312680 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 350-563 chrX 38696421 38696622 + 2 NA Intergenic Intergenic -104911 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 433-70 chr13 46806273 46806547 + 2 NA Intergenic Intergenic -9249 NM_001984 2098 Hs.432491 NM_001984 ENSG00000139684 ESD FGH esterase D protein-coding 402-12 chr1 170947705 170948032 + 2 NA intron (NM_001163629, intron 3 of 21) intron (NM_001163629, intron 3 of 21) 12334 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 406-152 chr2 120124546 120124842 + 2 NA intron (NM_001330310, intron 16 of 24) L1MC4|LINE|L1 98706 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 282-261 chr20 11809986 11810181 + 2 NA TTS (NR_110635) TTS (NR_110635) 60632 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 433-123 chr19 36452330 36452671 + 2 NA intron (NM_001145345, intron 4 of 4) intron (NM_001145345, intron 4 of 4) 31326 NR_033748 644189 Hs.608412 NR_033748 LOC644189 - acyl-CoA thioesterase 4 pseudogene pseudo 418-99 chr18 67751605 67751871 + 2 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 63084 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 313-491 chr7 34126101 34126382 + 2 NA intron (NM_133468, intron 14 of 15) L2a|LINE|L2 220702 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 307-9 chr1 83505359 83505556 + 2 NA Intergenic L2a|LINE|L2 59403 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 276-290 chr3 46125092 46125299 + 2 NA Intergenic MER92-int|LTR|ERV1 83118 NM_001295 1230 Hs.301921 NM_001295 ENSG00000163823 CCR1 CD191|CKR-1|CKR1|CMKBR1|HM145|MIP1aR|SCYAR1 C-C motif chemokine receptor 1 protein-coding 478-55 chr12 14117494 14117861 + 2 NA Intergenic L1MDa|LINE|L1 -137321 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 504-99 chr17 34765819 34766203 + 2 NA Intergenic Intergenic 185262 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 289-340 chr4 65095044 65095200 + 2 NA Intergenic AluY|SINE|Alu -90622 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 113-53 chr9 29263629 29263710 + 2 NA Intergenic Intergenic -50068 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 205-193 chr3 161836543 161836704 + 2 NA Intergenic L1MCa|LINE|L1 339815 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 530-249 chr8 59404473 59404899 + 2 NA Intergenic L1MB3|LINE|L1 285476 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 532-91 chr17 51445985 51446368 + 2 NA TTS (NR_146897) TTS (NR_146897) 10749 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 209-174 chr20 47648332 47648449 + 2 NA intron (NM_181659, intron 18 of 22) intron (NM_181659, intron 18 of 22) 137674 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 124-25 chr14 33260798 33260901 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 321970 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 268-244 chr3 83898962 83899200 + 2 NA Intergenic Intergenic 970494 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 410-161 chr20 13172861 13173144 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -48272 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 196-91 chr16 49373376 49373566 + 2 NA promoter-TSS (NM_144602) promoter-TSS (NM_144602) -333 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 460-265 chr6 167556163 167556420 + 2 NA Intergenic Intergenic -83501 NR_134591 105378127 Hs.58456 NR_134591 LOC105378127 - uncharacterized LOC105378127 ncRNA 493-235 chr5 13076332 13076684 + 2 NA Intergenic Intergenic -43622 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 276-342 chr4 80448459 80448726 + 2 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 112872 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 201-28 chr10 29932281 29932470 + 2 NA Intergenic AluSg|SINE|Alu 127211 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 370-169 chr16 35976174 35976443 + 2 NA Intergenic ALR/Alpha|Satellite|centr 229756 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 512-79 chr14 67318869 67319265 + 2 NA intron (NM_001256550, intron 11 of 14) AluY|SINE|Alu 40737 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 136-12 chr11 12487021 12487110 + 2 NA intron (NM_018222, intron 4 of 12) intron (NM_018222, intron 4 of 12) 109494 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 539-65 chr14 37509701 37510070 + 2 NA intron (NM_138731, intron 13 of 13) (AT)n|Simple_repeat|Simple_repeat 85364 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 270-257 chr4 33928274 33928436 + 2 NA intron (NR_125902, intron 4 of 4) MSTA|LTR|ERVL-MaLR 111538 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 229-416 chr9 73300658 73300853 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 148890 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 305-140 chr13 84506571 84506824 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) -276957 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 151-40 chr2 146964066 146964161 + 2 NA Intergenic Intergenic 377056 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 325-16 chr1 101327618 101327845 + 2 NA intron (NR_126402, intron 1 of 4) intron (NR_126402, intron 1 of 4) 3894 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 255-161 chr17 54272573 54272752 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 449735 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 364-189 chr19 36513354 36513633 + 2 NA 3' UTR (NM_001166037, exon 3 of 3) 3' UTR (NM_001166037, exon 3 of 3) 14778 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 239-291 chr4 150720221 150720433 + 2 NA intron (NM_001367550, intron 36 of 56) HAL1b|LINE|L1 138176 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 485-119 chr19 44322978 44323265 + 2 NA Intergenic L1MA4|LINE|L1 -18096 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 542-139 chr3 97395959 97396368 + 2 NA intron (NM_001080448, intron 5 of 17) L3|LINE|CR1 -43444 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 218-312 chr7 133720530 133720697 + 2 NA intron (NM_021807, intron 10 of 17) intron (NM_021807, intron 10 of 17) 104275 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 512-59 chr12 4907132 4907449 + 2 NA Intergenic L2a|LINE|L2 -2615 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 565-42 chr14 71650014 71650552 + 2 NA intron (NM_001354286, intron 8 of 24) intron (NM_001354286, intron 8 of 24) 63985 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 777-20 chr14 31982465 31983051 + 2 NA Intergenic L1PA16|LINE|L1 37905 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 310-405 chr5 76127441 76127655 + 2 NA intron (NM_014979, intron 1 of 12) intron (NM_014979, intron 1 of 12) 44165 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 312-55 chr10 91641612 91641827 + 2 NA Intergenic Intergenic -8648 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 250-386 chr6 157390298 157390503 + 2 NA intron (NM_024630, intron 1 of 8) L1MEf|LINE|L1 9210 NM_024630 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 330-358 chr3 111243218 111243441 + 2 NA Intergenic MER52A|LTR|ERV1 171513 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 250-220 chr2 122395273 122395455 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 639713 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 297-137 chr14 58711281 58711541 + 2 NA Intergenic AluJb|SINE|Alu 72574 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 118-63 chr8 121206377 121206473 + 2 NA Intergenic Intergenic -394379 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 113-36 chr3 86536617 86536704 + 2 NA Intergenic L1MA9|LINE|L1 54717 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 232-388 chr8 129212740 129212962 + 2 NA Intergenic Intergenic 28389 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 316-271 chr2 84141152 84141317 + 2 NA Intergenic MER8|DNA|TcMar-Tigger -149448 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 511-111 chr2 33583880 33584284 + 2 NA 3' UTR (NM_001304538, exon 7 of 7) 3' UTR (NM_001304538, exon 7 of 7) -14652 NR_146505 105374454 NR_146505 LOC105374454 - uncharacterized LOC105374454 ncRNA 450-115 chr18 364369 364731 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -96503 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 164-62 chr2 235521958 235522102 + 2 NA intron (NM_001037131, intron 1 of 17) intron (NM_001037131, intron 1 of 17) -4109 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 460 chr1 45137284 45137604 + 2 NA intron (NM_020883, intron 1 of 13) L2a|LINE|L2 69161 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 227-202 chr20 24583686 24583841 + 2 NA intron (NM_024893, intron 2 of 3) MER5B|DNA|hAT-Charlie 113802 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 194-103 chr2 180321594 180321735 + 2 NA Intergenic Intergenic -314367 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 350-154 chr15 59385465 59385728 + 2 NA Intergenic AluSz|SINE|Alu -12725 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 273-164 chr16 73331775 73332032 + 2 NA Intergenic Intergenic -54902 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 289-402 chr6 1357809 1357993 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -31675 NM_001452 2295 Hs.484423 NM_001452 ENSG00000137273 FOXF2 FKHL6|FREAC-2|FREAC2 forkhead box F2 protein-coding 376-378 chr7 67669501 67669710 + 2 NA Intergenic Intergenic 333629 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 419-83 chr14 25973646 25974017 + 2 NA Intergenic L1ME1|LINE|L1 579599 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 207-83 chr14 65458275 65458421 + 2 NA intron (NM_004480, intron 2 of 9) intron (NM_004480, intron 2 of 9) -12754 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 222-292 chr5 65339684 65339812 + 2 NA intron (NR_135689, intron 7 of 25) L1ME4c|LINE|L1 142172 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 301-454 chr8 88739636 88739875 + 2 NA Intergenic MER53|DNA|hAT -412272 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 326-582 chrX 42055036 42055354 + 2 NA Intergenic LTR16|LTR|ERVL -131641 NM_001367721 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 615-134 chr8 43576447 43576776 + 2 NA Intergenic ALR/Alpha|Satellite|centr 284169 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 382-202 chr2 89815158 89815502 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -177423 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 463-40 chr10 56119306 56119735 + 2 NA Intergenic Intergenic 241739 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 234-19 chr1 173085751 173085932 + 2 NA Intergenic L1MB3|LINE|L1 -34878 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 545-236 chr8 83165179 83165719 + 2 NA Intergenic Intergenic -238309 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 783-25 chr14 78571406 78572007 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 167987 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 547-137 chr3 81620201 81620597 + 2 NA intron (NM_000158, intron 7 of 15) AluSx3|SINE|Alu 141246 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 374-156 chr18 68101141 68101454 + 2 NA Intergenic Intergenic -286475 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 196-248 chr8 56457755 56457906 + 2 NA intron (NR_125813, intron 1 of 3) L1M4|LINE|L1 -11189 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 232-75 chr12 26197244 26197401 + 2 NA intron (NM_005086, intron 1 of 2) intron (NM_005086, intron 1 of 2) 1749 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 153-33 chr14 85957307 85957435 + 2 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 22693 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 249-111 chr14 40124120 40124285 + 2 NA Intergenic Intergenic -691702 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 275-308 chr6 44997865 44998068 + 2 NA intron (NM_181356, intron 8 of 12) L1MD|LINE|L1 199804 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 520-165 chr20 21462249 21462594 + 2 NA Intergenic Intergenic 51643 NM_002509 4821 Hs.516922 NM_002509 ENSG00000125820 NKX2-2 NKX2.2|NKX2B NK2 homeobox 2 protein-coding 597-31 chr10 121055055 121055436 + 2 NA Intergenic Intergenic 203883 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 426-98 chr16 63882088 63882391 + 2 NA Intergenic Intergenic 1239824 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 352-289 chr20 56331922 56332238 + 2 NA Intergenic Intergenic -26894 NM_080821 116151 Hs.143736 NM_080821 ENSG00000124098 FAM210B 5A3|C20orf108|dJ1167H4.1 family with sequence similarity 210 member B protein-coding 167-39 chr15 91634843 91635005 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 171585 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 200-204 chr5 23575006 23575157 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 67426 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 220-317 chr6 61704565 61704760 + 2 NA intron (NR_146874, intron 7 of 13) L2|LINE|L2 130532 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 565-20 chr10 120213989 120214397 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 141030 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 268-126 chr14 81887362 81887541 + 2 NA Intergenic L1MB4|LINE|L1 -144313 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 869-21 chr16 82932823 82933519 + 2 NA intron (NM_001220490, intron 2 of 12) THE1C|LTR|ERVL-MaLR 57127 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 201-185 chr4 178199956 178200144 + 2 NA Intergenic L1MC1|LINE|L1 -292114 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 411-106 chr16 8505967 8506227 + 2 NA Intergenic Intergenic 83741 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 512-123 chr2 99135825 99136132 + 2 NA intron (NM_001349013, intron 1 of 16) AluSq2|SINE|Alu 5202 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 223-135 chr19 28815450 28815629 + 2 NA Intergenic MSTC-int|LTR|ERVL-MaLR -87845 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 219-81 chr12 117767339 117767499 + 2 NA intron (NM_173598, intron 3 of 19) AluY|SINE|Alu 201571 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 379-87 chr14 26808045 26808316 + 2 NA intron (NR_110033, intron 3 of 3) intron (NR_110033, intron 3 of 3) -1168 NR_110556 102724890 Hs.569381 NR_110556 ENSG00000257185 LINC02293 - long intergenic non-protein coding RNA 2293 ncRNA 309-349 chr3 74251790 74251971 + 2 NA Intergenic Intergenic 269260 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 145-45 chr2 25600613 25600753 + 2 NA intron (NM_001351393, intron 4 of 17) intron (NM_001351393, intron 4 of 17) 49539 NM_001256308 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 329-527 chr7 14740261 14740566 + 2 NA intron (NM_001350724, intron 3 of 24) MER41-int|LTR|ERV1 101037 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 167-89 chr5 26426981 26427135 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 611528 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 340-500 chr7 11880319 11880555 + 2 NA Intergenic L1M6|LINE|L1 -48239 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 322-418 chr5 31554304 31554529 + 2 NA non-coding (NR_134298, exon 9 of 9) non-coding (NR_134298, exon 9 of 9) 22115 NM_018356 55322 Hs.519246 NM_018356 ENSG00000082213 C5orf22 - chromosome 5 open reading frame 22 protein-coding 351-139 chr14 83451624 83451940 + 2 NA Intergenic Intergenic 809150 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 282-339 chr4 54863808 54864012 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 205982 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 452-20 chr10 11434700 11435009 + 2 NA Intergenic MER61B|LTR|ERV1 -90180 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 431-183 chr3 103611872 103612153 + 2 NA Intergenic Intergenic -87896 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 201-130 chr2 176089833 176089975 + 2 NA Intergenic Intergenic -2817 NM_000523 3239 Hs.152414 NM_000523 ENSG00000128714 HOXD13 BDE|BDSD|HOX4I|SPD|SPD1 homeobox D13 protein-coding 451-104 chr18 56594984 56595287 + 2 NA Intergenic L1MB8|LINE|L1 43457 NM_004786 9352 Hs.114412 NM_004786 ENSG00000091164 TXNL1 HEL-S-114|TRP32|TXL-1|TXNL|Txl thioredoxin like 1 protein-coding 231-231 chr3 89491899 89492116 + 2 NA Intergenic L1MDa|LINE|L1 384386 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 368-147 chr14 67996958 67997147 + 2 NA intron (NM_133509, intron 7 of 10) L2a|LINE|L2 173460 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 332-234 chr19 52152502 52152781 + 2 NA Intergenic Intergenic -12703 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 360-457 chr8 75392426 75392744 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -15064 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 353-446 chr6 52330268 52330547 + 2 NA Intergenic L2c|LINE|L2 -31744 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 380-36 chr10 26752596 26752923 + 2 NA intron (NM_001178125, intron 5 of 6) intron (NM_001178125, intron 5 of 6) 55058 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 316-514 chr7 42643762 42643944 + 2 NA Intergenic Intergenic 62594 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 559-129 chr3 192604234 192604584 + 2 NA intron (NM_004113, intron 2 of 5) MER11A|LTR|ERVK 89387 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 314-274 chr2 44684580 44684785 + 2 NA intron (NM_024766, intron 3 of 10) intron (NM_024766, intron 3 of 10) 254206 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 266-435 chr8 120881977 120882226 + 2 NA Intergenic Intergenic -70055 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 539-79 chr15 71684587 71684945 + 2 NA intron (NM_001286429, intron 2 of 11) intron (NM_001286429, intron 2 of 11) 6773 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 299-373 chr5 77025805 77026093 + 2 NA Intergenic Intergenic -4455 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 336-524 chr7 86171630 86171886 + 2 NA Intergenic Intergenic -472151 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 265-69 chr12 1335285 1335542 + 2 NA intron (NR_027948, intron 15 of 19) L1PA13|LINE|L1 -165078 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 283-100 chr12 48596911 48597100 + 2 NA Intergenic L1ME3B|LINE|L1 -26959 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 258-413 chr8 136447782 136447922 + 2 NA Intergenic L2a|LINE|L2 -82946 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 296-87 chr12 6985292 6985454 + 2 NA intron (NM_005768, intron 1 of 12) AluY|SINE|Alu 14460 NR_135131 10436 Hs.558447 NM_006331 ENSG00000126749 EMG1 C2F|Grcc2f|NEP1 EMG1 N1-specific pseudouridine methyltransferase protein-coding 229-64 chr11 44757852 44757988 + 2 NA intron (NM_130783, intron 1 of 9) L1M3|LINE|L1 30958 NM_130783 90139 Hs.385634 NM_130783 ENSG00000157570 TSPAN18 TSPAN tetraspanin 18 protein-coding 349-301 chr21 22838507 22838762 + 2 NA Intergenic L1MD2|LINE|L1 -240650 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 273-2 chr1 5543930 5544159 + 2 NA Intergenic L1MB3|LINE|L1 318697 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 431-301 chr8 126746961 126747316 + 2 NA Intergenic L1MA8|LINE|L1 -188660 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 193-28 chr10 43554386 43554516 + 2 NA Intergenic L1M4|LINE|L1 14008 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 242-191 chr2 100649039 100649252 + 2 NA Intergenic Intergenic 45406 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 352-459 chr6 70543613 70543831 + 2 NA intron (NM_020819, intron 19 of 20) intron (NM_020819, intron 19 of 20) -23208 NM_145267 135154 Hs.418495 NM_145267 ENSG00000154079 SDHAF4 C6orf57|Sdh8 succinate dehydrogenase complex assembly factor 4 protein-coding 352-551 chr8 144964654 144964953 + 2 NA Intergenic L1PB1|LINE|L1 -13923 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 452-134 chr2 122699685 122700100 + 2 NA Intergenic Intergenic 373589 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 613-105 chr5 34941750 34942316 + 2 NA intron (NM_194283, intron 7 of 12) intron (NM_194283, intron 7 of 12) 12440 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 316-110 chr11 100177477 100177687 + 2 NA intron (NM_001243270, intron 12 of 23) L2c|LINE|L2 -509706 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 751-57 chr5 24030101 24030619 + 2 NA intron (NR_131245, intron 4 of 4) L1PB|LINE|L1 79012 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 458-265 chr8 119020234 119020547 + 2 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -46857 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 392-13 chr1 174487376 174487634 + 2 NA intron (NM_001366446, intron 13 of 25) L1MA3|LINE|L1 39541 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 255-468 chrX 77029533 77029707 + 2 NA Intergenic L1P2|LINE|L1 -15088 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 246-121 chr14 70407692 70407865 + 2 NA intron (NM_001202549, intron 1 of 4) intron (NM_001202549, intron 1 of 4) 9312 NM_001202549 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 137-76 chr5 135089356 135089437 + 2 NA intron (NR_161235, intron 2 of 5) L1MA5|LINE|L1 -49349 NR_105049 101927953 Hs.436898 NR_105049 ENSG00000249082 C5orf66-AS1 Epist C5orf66 antisense RNA 1 ncRNA 532-68 chr14 60411593 60411950 + 2 NA Intergenic L1PB1|LINE|L1 74292 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 257-439 chr9 79642766 79642984 + 2 NA intron (NM_001351547, intron 5 of 18) intron (NM_001351547, intron 5 of 18) 69698 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 303-287 chr3 97206319 97206473 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -233211 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 220-330 chr6 149308043 149308222 + 2 NA intron (NM_001292035, intron 2 of 6) L1ME4a|LINE|L1 -9580 NM_001292034 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 278-368 chr6 61619781 61619984 + 2 NA intron (NR_146870, intron 13 of 15) L1PB3|LINE|L1 45752 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 472-71 chr13 43932015 43932378 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 52292 NM_001350646 144811 Hs.210586 NM_153218 ENSG00000179630 LACC1 C13orf31|FAMIN laccase domain containing 1 protein-coding 251-405 chr8 127519241 127519430 + 2 NA Intergenic L1MD1|LINE|L1 -37196 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 338-94 chr11 31271241 31271545 + 2 NA intron (NM_181807, intron 7 of 8) L2|LINE|L2 98346 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 777-2 chr1 117164986 117165696 + 2 NA intron (NR_045603, intron 2 of 5) MIR|SINE|MIR 38495 NM_001253849 79679 Hs.546434 NM_024626 ENSG00000134258 VTCN1 B7-H4|B7H4|B7S1|B7X|B7h.5|PRO1291|VCTN1 V-set domain containing T cell activation inhibitor 1 protein-coding 443-20 chr1 117265132 117265493 + 2 NA Intergenic L2c|LINE|L2 -30154 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 279-268 chr3 106797346 106797511 + 2 NA Intergenic LTR24B|LTR|ERV1 443210 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 214-180 chr2 210607851 210608016 + 2 NA intron (NR_163592, intron 8 of 27) intron (NR_163592, intron 8 of 27) -9638 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 355-402 chr5 63177429 63177680 + 2 NA Intergenic Intergenic 598735 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 280-444 chr9 103822972 103823235 + 2 NA Intergenic Intergenic -176606 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 353-112 chr12 46719510 46719797 + 2 NA Intergenic L1PA16|LINE|L1 106344 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 348-389 chr5 8096252 8096515 + 2 NA Intergenic Intergenic 227235 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 395-112 chr15 87092411 87092781 + 2 NA Intergenic (TGTG)n|Simple_repeat|Simple_repeat -104170 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 497-139 chr2 179549031 179549479 + 2 NA intron (NR_148056, intron 3 of 9) L1MB7|LINE|L1 13333 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 403-229 chr4 112615002 112615300 + 2 NA intron (NM_018392, intron 6 of 27) Tigger17a|DNA|TcMar-Tigger -21813 NM_001267039 51574 Hs.713663 NM_015454 ENSG00000174720 LARP7 ALAZS|HDCMA18P|PIP7S La ribonucleoprotein domain family member 7 protein-coding 306-119 chr13 19205977 19206166 + 2 NA Intergenic Intergenic 24038 NR_126054 101928697 Hs.742697 NR_126054 LOC101928697 - uncharacterized LOC101928697 ncRNA 170-81 chr20 34391543 34391662 + 2 NA intron (NM_001257137, intron 2 of 25) intron (NM_001257137, intron 2 of 25) 28329 NM_031483 83737 Hs.632272 NM_031483 ENSG00000078747 ITCH ADMFD|AIF4|AIP4|NAPP1 itchy E3 ubiquitin protein ligase protein-coding 330-70 chr10 104003016 104003316 + 2 NA exon (NM_014720, exon 9 of 19) exon (NM_014720, exon 9 of 19) 36026 NM_014720 9748 Hs.591922 NM_014720 ENSG00000065613 SLK LOSK|STK2|bA16H23.1|se20-9 STE20 like kinase protein-coding 435-118 chr2 46375836 46376200 + 2 NA intron (NM_001430, intron 8 of 15) intron (NM_001430, intron 8 of 15) 18149 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 288-89 chr12 128219757 128220043 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -47503 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 183 chr1 49985696 49985812 + 2 NA intron (NM_001323575, intron 1 of 12) intron (NM_001323575, intron 1 of 12) 38200 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 283-453 chr8 144583733 144584014 + 2 NA intron (NM_025251, intron 1 of 10) intron (NM_025251, intron 1 of 10) 21822 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 456-68 chr12 117524487 117524826 + 2 NA intron (NM_173598, intron 14 of 19) AluJr|SINE|Alu -162854 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 242-292 chr5 19478250 19478428 + 2 NA intron (NM_001349559, intron 12 of 12) intron (NM_001349559, intron 12 of 12) 407933 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 127-35 chr16 76698897 76698967 + 2 NA Intergenic L1MD|LINE|L1 63934 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 267-99 chr13 93188829 93189025 + 2 NA Intergenic Intergenic -37880 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 517-15 chr1 179793964 179794350 + 2 NA intron (NM_001329719, intron 1 of 4) intron (NM_001329719, intron 1 of 4) -9767 NR_162130 113219451 NR_162130 MIR12116 - microRNA 12116 ncRNA 333-26 chr1 107608889 107609094 + 2 NA intron (NM_006113, intron 22 of 26) intron (NM_006113, intron 22 of 26) 79508 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 493-282 chr7 96116741 96117005 + 2 NA Intergenic Intergenic 102883 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 325-107 chr11 96753776 96753966 + 2 NA Intergenic L1PA11|LINE|L1 245446 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 333-411 chr4 127329527 127329844 + 2 NA Intergenic Intergenic -303272 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 251-379 chr7 95336969 95337160 + 2 NA Intergenic L1ME3B|LINE|L1 -12532 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 460-291 chr8 109210492 109210904 + 2 NA Intergenic LTR33A_|LTR|ERVL 119235 NM_001128211 84955 Hs.380291 NM_032869 ENSG00000120526 NUDCD1 CML66|OVA66 NudC domain containing 1 protein-coding 544-7 chr1 55768310 55768723 + 2 NA Intergenic Intergenic 176447 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 267-110 chr14 60427495 60427636 + 2 NA Intergenic L1PA4|LINE|L1 58498 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 398-193 chr21 23843038 23843274 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -458321 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 217-148 chr17 42712287 42712418 + 2 NA exon (NM_001321082, exon 11 of 20) exon (NM_001321082, exon 11 of 20) -4201 NR_106838 102466195 NR_106838 ENSG00000275273 MIR6780A hsa-mir-6780a microRNA 6780a ncRNA 226-49 chr10 115952395 115952569 + 2 NA Intergenic Intergenic 242307 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 278-324 chr5 8476728 8476897 + 2 NA Intergenic Intergenic 15887 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 243-18 chr1 161990076 161990295 + 2 NA intron (NM_001347700, intron 6 of 7) MER45B|DNA|hAT-Tip100 34280 NM_015441 25903 Hs.507515 NM_015441 ENSG00000162745 OLFML2B - olfactomedin like 2B protein-coding 266-61 chr11 45428515 45428735 + 2 NA Intergenic Intergenic 57228 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 251-2 chr1 33754072 33754294 + 2 NA intron (NM_052896, intron 13 of 69) MSTB|LTR|ERVL-MaLR -106292 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 239-113 chr14 97706436 97706635 + 2 NA Intergenic Intergenic -19877 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 241-253 chr3 170762749 170762894 + 2 NA Intergenic Intergenic 107374 NM_001320451 200916 Hs.380933 NM_001099645 ENSG00000163584 RPL22L1 - ribosomal protein L22 like 1 protein-coding 254-162 chr18 5819542 5819725 + 2 NA Intergenic Intergenic -21062 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 426-203 chr4 45094214 45094631 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -367788 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 173-13 chr10 73460286 73460410 + 2 NA intron (NM_001142353, intron 9 of 13) intron (NM_001142353, intron 9 of 13) -26787 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 521-16 chr1 211212165 211212591 + 2 NA Intergenic AluY|SINE|Alu -46899 NR_146432 55758 Hs.356399 NM_018254 ENSG00000117625 RCOR3 - REST corepressor 3 protein-coding 236-287 chr5 63291567 63291759 + 2 NA Intergenic L1MC4a|LINE|L1 670629 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 225-224 chr3 133995188 133995361 + 2 NA intron (NM_005630, intron 1 of 13) L2c|LINE|L2 34651 NM_005630 6578 Hs.518270 NM_005630 ENSG00000174640 SLCO2A1 MATR1|OATP2A1|PGT|PHOAR2|SLC21A2 solute carrier organic anion transporter family member 2A1 protein-coding 245-39 chr10 37554210 37554403 + 2 NA Intergenic Intergenic 48625 NM_001190489 100288485 Hs.727092 NM_001190489 ENSG00000256892 MTRNR2L7 HN7 MT-RNR2 like 7 protein-coding 331-165 chr14 84339327 84339634 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -932452 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 190-48 chr13 56818056 56818176 + 2 NA Intergenic L1PB3|LINE|L1 -322802 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 209-178 chr21 14797490 14797686 + 2 NA Intergenic L1M3c|LINE|L1 121080 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 421-21 chr1 221242849 221243125 + 2 NA Intergenic L1MB3|LINE|L1 93309 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 262-437 chr8 122199702 122199872 + 2 NA Intergenic (AAAC)n|Simple_repeat|Simple_repeat 368857 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 300-348 chr5 18466701 18466958 + 2 NA Intergenic Intergenic 659555 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 262-48 chr10 55283652 55283859 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -315287 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 408-175 chr2 195202532 195202828 + 2 NA Intergenic Intergenic -454278 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 218-6 chr1 57182369 57182568 + 2 NA intron (NM_001353980, intron 5 of 5) MIRc|SINE|MIR -216328 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 312-400 chr5 8233220 8233423 + 2 NA Intergenic Intergenic 224243 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 220-81 chr12 23180350 23180472 + 2 NA intron (NR_120471, intron 1 of 4) intron (NR_120471, intron 1 of 4) 4775 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 296-187 chr17 68319676 68319878 + 2 NA intron (NM_001352899, intron 2 of 12) L2c|LINE|L2 27642 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 466-224 chr6 48565308 48565670 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -496800 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 215-353 chrY 10825208 10825325 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat 914468 NR_003593 100101121 Hs.522846 NR_003593 ENSG00000250204 TTTY23B TTTY23 testis-specific transcript, Y-linked 23B ncRNA 517-257 chr8 16620312 16620664 + 2 NA Intergenic Intergenic 381857 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 228-59 chr11 97867656 97867849 + 2 NA Intergenic L1MA2|LINE|L1 -1153197 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 253-39 chr1 240375453 240375666 + 2 NA intron (NM_020066, intron 14 of 17) intron (NM_020066, intron 14 of 17) 236596 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 866-26 chr2 22226702 22227301 + 2 NA Intergenic L1M4|LINE|L1 -309478 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 547-117 chr2 227927663 227928108 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 56254 NM_178821 164781 Hs.424594 NM_178821 ENSG00000123977 DAW1 ODA16|WDR69 dynein assembly factor with WD repeats 1 protein-coding 341-197 chr17 54037442 54037689 + 2 NA Intergenic Intergenic 214638 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 436-25 chr1 237418503 237418819 + 2 NA intron (NM_001035, intron 11 of 104) Charlie2b|DNA|hAT-Charlie -52458 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 301-181 chr19 27593855 27594099 + 2 NA Intergenic ALR/Alpha|Satellite|centr -199454 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 138-59 chr4 140192631 140192754 + 2 NA Intergenic Intergenic -38508 NM_018717 55534 Hs.586165 NM_018717 ENSG00000196782 MAML3 CAGH3|ERDA3|GDN|MAM-2|MAM2|TNRC3|mam-3 mastermind like transcriptional coactivator 3 protein-coding 408-209 chr3 62120282 62120585 + 2 NA intron (NM_002841, intron 5 of 29) L2b|LINE|L2 198514 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 326-268 chr2 156962201 156962404 + 2 NA Intergenic Intergenic -295403 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 233-116 chr16 20241338 20241500 + 2 NA Intergenic Intergenic 86094 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 562-102 chr2 40380407 40380821 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 49690 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 325-301 chr20 7822682 7822956 + 2 NA Intergenic L2a|LINE|L2 117639 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 530-149 chr20 40036050 40036408 + 2 NA Intergenic L1MA9|LINE|L1 31768 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 253-117 chr13 62073496 62073661 + 2 NA Intergenic L1ME1|LINE|L1 -44030 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 387-145 chr17 73711052 73711277 + 2 NA Intergenic L2c|LINE|L2 -26690 NM_001278587 100134391 Hs.694655 NM_001278587 LOC100134391 - uncharacterized LOC100134391 protein-coding 199-123 chr2 134909410 134909574 + 2 NA intron (NR_036549, intron 1 of 4) L2b|LINE|L2 9114 NR_036549 100129961 Hs.729028 NR_036549 CCNT2-AS1 - CCNT2 antisense RNA 1 ncRNA 455-105 chr18 54971443 54971852 + 2 NA Intergenic L1ME3A|LINE|L1 -12186 NM_025214 80323 Hs.120790 NM_025214 ENSG00000166510 CCDC68 SE57-1 coiled-coil domain containing 68 protein-coding 260-173 chr17 64062144 64062335 + 2 NA intron (NM_001433, intron 10 of 21) intron (NM_001433, intron 10 of 21) -41605 NM_001099787 3384 Hs.431460 NM_000873 ENSG00000108622 ICAM2 CD102 intercellular adhesion molecule 2 protein-coding 252-240 chr21 34840688 34840868 + 2 NA intron (NM_001001890, intron 3 of 5) intron (NM_001001890, intron 3 of 5) 47921 NM_001122607 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 350-66 chr11 8011701 8011955 + 2 NA non-coding (NR_125366, exon 3 of 3) non-coding (NR_125366, exon 3 of 3) 4681 NR_125366 103581031 Hs.249366 NR_125366 ENSG00000255420 CASC23 LINC01464 cancer susceptibility 23 ncRNA 254-152 chr17 32441318 32441500 + 2 NA Intergenic MIRc|SINE|MIR -3101 NM_001270482 5717 Hs.443379 NM_002815 ENSG00000108671 PSMD11 Rpn6|S9|p44.5 proteasome 26S subunit, non-ATPase 11 protein-coding 463-43 chr10 75796918 75797266 + 2 NA intron (NM_032024, intron 1 of 5) L1M5|LINE|L1 14331 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 152-61 chr3 29506610 29506731 + 2 NA intron (NM_001003792, intron 3 of 13) L1M2|LINE|L1 225358 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 643-32 chr14 62279129 62279514 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -139348 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 305-105 chr11 109208417 109208703 + 2 NA Intergenic L1MD2|LINE|L1 -213630 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 214-77 chr12 29730796 29730947 + 2 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 53071 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 185-72 chr16 82132303 82132451 + 2 NA Intergenic L1ME1|LINE|L1 37847 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 609-8 chr10 54784790 54785233 + 2 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 16220 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 413-223 chr4 97592164 97592449 + 2 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 225380 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 578-20 chr1 241120711 241121074 + 2 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) -11380 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 485-127 chr2 34493094 34493448 + 2 NA Intergenic Intergenic -184286 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 328-225 chr18 57393076 57393247 + 2 NA Intergenic L1MA2|LINE|L1 40604 NM_015879 51046 Hs.23172 NM_015879 ENSG00000177511 ST8SIA3 SIAT8C|ST8SiaIII ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3 protein-coding 292-161 chr16 27416479 27416737 + 2 NA intron (NM_181079, intron 2 of 9) L1MEg|LINE|L1 -10663 NM_021798 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 134-24 chr13 34665493 34665584 + 2 NA Intergenic Intergenic -24853 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 260-354 chr5 120690817 120691071 + 2 NA Intergenic Intergenic 159480 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 232-28 chr10 52688326 52688456 + 2 NA intron (NR_155748, intron 1 of 2) L1M5|LINE|L1 67013 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 409-7 chr1 174550996 174551318 + 2 NA intron (NM_001366446, intron 13 of 25) AluSc8|SINE|Alu 103193 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 173-89 chr3 64973418 64973561 + 2 NA intron (NR_038264, intron 4 of 5) MER103C|DNA|hAT-Charlie -285489 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 307-472 chr8 32098498 32098683 + 2 NA intron (NR_104156, intron 3 of 3) intron (NR_104156, intron 3 of 3) 72372 NR_104156 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 265-223 chr21 22350881 22351085 + 2 NA Intergenic L1ME1|LINE|L1 252366 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 446-29 chr1 224451236 224451650 + 2 NA intron (NM_001322303, intron 1 of 5) intron (NM_001322303, intron 1 of 5) 16594 NR_136291 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 596-153 chr7 63987805 63988265 + 2 NA Intergenic LTR70|LTR|ERV1 -10771 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 323-454 chr6 45071672 45071905 + 2 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 125982 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 630-2 chr1 68975121 68975691 + 2 NA Intergenic Intergenic -80492 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 376-400 chr8 70293440 70293741 + 2 NA intron (NM_001321711, intron 2 of 21) intron (NM_001321711, intron 2 of 21) 109800 NM_001321707 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 153-45 chr18 37012705 37012843 + 2 NA intron (NR_136303, intron 6 of 13) intron (NR_136303, intron 6 of 13) -88960 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 341-575 chrX 58314897 58315100 + 2 NA Intergenic ALR/Alpha|Satellite|centr -404365 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 325-116 chr11 131125806 131126031 + 2 NA Intergenic L1MA4A|LINE|L1 -209431 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 384-191 chr2 215159249 215159453 + 2 NA Intergenic Intergenic -20725 NM_173076 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 457-75 chr15 94564525 94564792 + 2 NA Intergenic L1ME4b|LINE|L1 208728 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 409-289 chr8 16203759 16204033 + 2 NA Intergenic Intergenic -11105 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 281-469 chrX 58343013 58343198 + 2 NA Intergenic ALR/Alpha|Satellite|centr -432472 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 212-295 chr7 21823966 21824138 + 2 NA intron (NM_001277115, intron 65 of 81) intron (NM_001277115, intron 65 of 81) 121847 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 211-301 chr8 78996306 78996512 + 2 NA Intergenic L1MA4|LINE|L1 158880 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 301-68 chr11 72507677 72507888 + 2 NA Intergenic MER30|DNA|hAT-Charlie -62874 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 426-304 chr8 134439096 134439402 + 2 NA Intergenic LTR16C|LTR|ERVL -158822 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 382-116 chr14 86551507 86551722 + 2 NA Intergenic L1MEd|LINE|L1 -354164 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 320-604 chrX 8931512 8931737 + 2 NA Intergenic Intergenic 102503 NM_205849 171483 Hs.733351 NM_173696 ENSG00000177138 FAM9B TEX39B family with sequence similarity 9 member B protein-coding 545-37 chr11 39377194 39377703 + 2 NA Intergenic Intergenic 728590 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 360-468 chr8 100479739 100479970 + 2 NA Intergenic L1ME2z|LINE|L1 79905 NM_001270378 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 546-10 chr1 184253240 184253664 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -133577 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 394-151 chr2 2001091 2001343 + 2 NA intron (NM_015025, intron 4 of 24) HAL1ME|LINE|L1 -256702 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 613-60 chr2 89823610 89824026 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -185911 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 330-478 chr7 9010429 9010716 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 576963 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 382-379 chr7 41644831 41645110 + 2 NA Intergenic MIRb|SINE|MIR -48949 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 615-81 chr3 16739463 16740052 + 2 NA Intergenic L1MB5|LINE|L1 -134334 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 280-204 chr2 116270389 116270609 + 2 NA Intergenic MIRc|SINE|MIR 926684 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 394-62 chr11 83552841 83553171 + 2 NA intron (NM_001142699, intron 19 of 27) L2c|LINE|L2 129419 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 944-26 chr8 140180027 140180643 + 2 NA intron (NM_001160372, intron 17 of 22) L1ME1|LINE|L1 -79800 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 281-300 chr3 170270872 170271099 + 2 NA intron (NM_002740, intron 6 of 17) intron (NM_002740, intron 6 of 17) 48561 NM_002740 5584 Hs.478199 NM_002740 ENSG00000163558 PRKCI DXS1179E|PKCI|nPKC-iota protein kinase C iota protein-coding 197-23 chr10 23571025 23571174 + 2 NA Intergenic L1M1|LINE|L1 -123628 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 238-339 chr6 149270471 149270670 + 2 NA intron (NM_001292035, intron 2 of 6) L1MA8|LINE|L1 -13019 NR_149096 105378049 Hs.615624 NR_149096 ENSG00000225924 TAB2-AS1 - TAB2 antisense RNA 1 ncRNA 372-81 chr11 92807961 92808281 + 2 NA intron (NM_001008781, intron 11 of 24) L2c|LINE|L2 107507 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 341-463 chr6 55696953 55697167 + 2 NA Intergenic Intergenic -117846 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 343-118 chr12 130627648 130627913 + 2 NA intron (NM_001351226, intron 2 of 21) L2a|LINE|L2 676 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 539-164 chr5 21221259 21221569 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -238066 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 368-96 chr12 14744514 14744764 + 2 NA Intergenic Intergenic 26492 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 246-327 chr5 53405712 53405894 + 2 NA Intergenic Intergenic -74826 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 303-463 chr8 114012181 114012371 + 2 NA Intergenic L3|LINE|CR1 -575337 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 340-493 chr7 3255083 3255391 + 2 NA Intergenic MER39B|LTR|ERV1 -46015 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 248-388 chr7 107103151 107103297 + 2 NA intron (NM_002736, intron 2 of 10) intron (NM_002736, intron 2 of 10) 58519 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 276-183 chr16 65445483 65445732 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 130693 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 319-195 chr17 74653770 74654064 + 2 NA Intergenic Intergenic -17214 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 271-7 chr1 67631534 67631747 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -53561 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 363-381 chr5 174262368 174262679 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger -73831 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 323-283 chr2 203953272 203953513 + 2 NA intron (NM_012092, intron 1 of 4) L1MEg|LINE|L1 16644 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 340-479 chr6 64006207 64006428 + 2 NA intron (NM_001292009, intron 33 of 43) L1PA15|LINE|L1 199481 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 860-33 chr3 76065425 76066039 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -280183 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 263-280 chr4 33577373 33577573 + 2 NA Intergenic MER67D|LTR|ERV1 462420 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 545-129 chr20 19155026 19155558 + 2 NA Intergenic L1ME3D|LINE|L1 -57350 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 444-293 chrX 85290765 85291145 + 2 NA intron (NM_001307940, intron 15 of 15) L1PA16|LINE|L1 46964 NM_021998 7552 Hs.326801 NM_021998 ENSG00000147180 ZNF711 CMPX1|MRX97|ZNF4|ZNF5|ZNF6|Zfp711|dJ75N13.1 zinc finger protein 711 protein-coding 325-569 chr9 24184287 24184605 + 2 NA Intergenic L1MEf|LINE|L1 -333845 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 232-158 chr2 15123983 15124191 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 437247 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 561-20 chr10 36561381 36561906 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -564214 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 385-372 chr8 8358859 8359232 + 2 NA intron (NR_163138, intron 3 of 6) LTR10E|LTR|ERV1 27199 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 279-135 chr17 52282752 52282952 + 2 NA Intergenic Intergenic -107670 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 360-165 chr17 21853729 21853971 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 161327 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 238-162 chr2 34355031 34355249 + 2 NA Intergenic Intergenic 287914 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 272-56 chr10 81801780 81802040 + 2 NA Intergenic AluSx1|SINE|Alu -73284 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 476-102 chr16 19622326 19622704 + 2 NA intron (NM_020314, intron 14 of 30) MER8|DNA|TcMar-Tigger 66812 NR_158161 57020 Hs.654964 NM_020314 ENSG00000103544 VPS35L C16orf62 VPS35 endosomal protein sorting factor like protein-coding 604-94 chr2 212331505 212331877 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 94669 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 273-219 chr2 74553294 74553465 + 2 NA promoter-TSS (NM_001381) promoter-TSS (NM_001381) 563 NM_001289164 84695 Hs.469045 NM_032603 ENSG00000115318 LOXL3 LOXL lysyl oxidase like 3 protein-coding 407-134 chr2 18466586 18466945 + 2 NA Intergenic L2c|LINE|L2 93888 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 275-357 chr8 55118377 55118538 + 2 NA intron (NM_052898, intron 1 of 2) intron (NM_052898, intron 1 of 2) 16429 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 730-46 chr3 68244190 68244744 + 2 NA intron (NM_001252216, intron 2 of 4) L1MD2|LINE|L1 240220 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 175-165 chr8 88643882 88643986 + 2 NA Intergenic Intergenic -316451 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 323-266 chr2 114910768 114910978 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -77325 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 581-53 chr16 86126877 86127306 + 2 NA Intergenic Intergenic -69090 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 175 chr1 7270518 7270657 + 2 NA intron (NM_001349608, intron 4 of 21) AluSq2|SINE|Alu 119167 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 311-202 chr17 73556189 73556492 + 2 NA intron (NM_001144952, intron 1 of 44) (GTT)n|Simple_repeat|Simple_repeat 42657 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 300-465 chr8 83182590 83182777 + 2 NA Intergenic L1MC4|LINE|L1 -221075 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 495-185 chr4 157667256 157667669 + 2 NA Intergenic Intergenic 94972 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 204-104 chr15 71464790 71464927 + 2 NA intron (NM_024817, intron 6 of 16) L3|LINE|CR1 -82378 NM_001286429 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 230-17 chr1 111282073 111282238 + 2 NA non-coding (NR_003928, exon 2 of 8) non-coding (NR_003928, exon 2 of 8) 1631 NR_003928 149620 Hs.736960 NM_001013621 ENSG00000203878 CHIAP2 - chitinase, acidic pseudogene 2 pseudo 140-2 chr1 100596277 100596348 + 2 NA Intergenic Intergenic 50692 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 377-184 chr19 57986721 57986982 + 2 NA intron (NM_001348025, intron 6 of 6) AluJo|SINE|Alu -12317 NM_152474 147685 Hs.134209 NM_152474 ENSG00000177025 C19orf18 - chromosome 19 open reading frame 18 protein-coding 372-416 chr5 155562749 155563096 + 2 NA Intergenic Intergenic 549167 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 506-228 chr5 59549234 59549728 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 37017 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 284-196 chr2 57579490 57579734 + 2 NA Intergenic Intergenic -328039 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 245-29 chr10 4642013 4642172 + 2 NA Intergenic Intergenic -14064 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 265-41 chr10 89991918 89992128 + 2 NA Intergenic L1MA9|LINE|L1 -34650 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 230-84 chr12 61708013 61708145 + 2 NA TTS (NM_178539) TTS (NM_178539) 484760 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 583-166 chr8 133622184 133622710 + 2 NA Intergenic Intergenic -50560 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 639-66 chr2 186339010 186339569 + 2 NA Intergenic L1PA15|LINE|L1 -146971 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 749-91 chr8 82228636 82229141 + 2 NA Intergenic L1MA4A|LINE|L1 -386602 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 230-324 chr6 105631975 105632145 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -228978 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 302-339 chr5 2571850 2572049 + 2 NA Intergenic Intergenic -140642 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 441-81 chr14 89071743 89072051 + 2 NA Intergenic L1PA11|LINE|L1 247246 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 345-254 chr2 60033744 60033998 + 2 NA Intergenic L1MEc|LINE|L1 349165 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 219-109 chr15 33986427 33986601 + 2 NA intron (NM_001320917, intron 1 of 1) intron (NM_001320917, intron 1 of 1) 18017 NM_001320917 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 276-66 chr10 89299213 89299430 + 2 NA Intergenic L1M2|LINE|L1 -2725 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 585-52 chr15 98598653 98599141 + 2 NA Intergenic AluSx1|SINE|Alu -49642 NM_001291858 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 386-100 chr14 62256882 62257175 + 2 NA Intergenic Intergenic -117055 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 195-121 chr2 226492217 226492358 + 2 NA Intergenic Intergenic 166506 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 334-186 chr16 7344299 7344558 + 2 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 11583 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 259-104 chr13 111855604 111855793 + 2 NA Intergenic Intergenic -37680 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 153-59 chr2 191077853 191077974 + 2 NA intron (NM_003151, intron 3 of 23) intron (NM_003151, intron 3 of 23) 56387 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 386-162 chr2 34936450 34936657 + 2 NA Intergenic MER66-int|LTR|ERV1 258996 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 698-53 chr22 43631740 43632225 + 2 NA intron (NM_198856, intron 17 of 29) intron (NM_198856, intron 17 of 29) 115728 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 381-271 chr4 54725898 54726169 + 2 NA exon (NM_001093772, exon 9 of 21) exon (NM_001093772, exon 9 of 21) 68105 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 651-113 chr8 10059980 10060589 + 2 NA intron (NM_001135670, intron 1 of 4) L1ME4b|LINE|L1 5992 NM_001135670 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 122-45 chr5 76598913 76599021 + 2 NA intron (NM_006633, intron 10 of 35) intron (NM_006633, intron 10 of 35) 10002 NR_134278 101929109 Hs.665172 NR_134278 ENSG00000249713 LOC101929109 - uncharacterized LOC101929109 ncRNA 728-89 chr7 35704507 35705057 + 2 NA Intergenic Intergenic 9576 NR_136255 101930085 Hs.599851 NR_136255 ENSG00000271122 LOC101930085 - uncharacterized LOC101930085 ncRNA 169-84 chr4 32532383 32532505 + 2 NA Intergenic L1MA1|LINE|L1 181406 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 591-176 chrUn_KI270442v1 124673 125185 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 410-44 chr10 112001392 112001635 + 2 NA Intergenic Intergenic 182252 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 398-271 chr5 63383635 63383999 + 2 NA Intergenic Intergenic 578475 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 321-504 chr6 118179923 118180116 + 2 NA intron (NM_001029858, intron 2 of 7) L1MEd|LINE|L1 94116 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 372-299 chr22 28513703 28513904 + 2 NA intron (NM_001145418, intron 2 of 22) (TATGTA)n|Simple_repeat|Simple_repeat 53934 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 396-127 chr17 65519057 65519388 + 2 NA Intergenic L1ME4a|LINE|L1 42426 NM_004655 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 286-125 chr14 68063881 68064065 + 2 NA intron (NM_133509, intron 7 of 10) L1M2|LINE|L1 240381 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 174-23 chr11 47974378 47974486 + 2 NA Intergenic Intergenic -6127 NM_002843 5795 Hs.318547 NM_002843 ENSG00000149177 PTPRJ CD148|DEP1|HPTPeta|R-PTP-ETA|SCC1 protein tyrosine phosphatase receptor type J protein-coding 112-29 chr21 31232041 31232126 + 2 NA intron (NM_001353686, intron 6 of 27) L1MB3|LINE|L1 -71143 NM_001353685 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 448-52 chr11 110890424 110890803 + 2 NA Intergenic (ATATAT)n|Simple_repeat|Simple_repeat -177424 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 916-7 chr14 25320187 25320858 + 2 NA Intergenic L1MA3|LINE|L1 -270225 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 233-270 chr4 105099928 105100115 + 2 NA Intergenic Intergenic -45854 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 245-71 chr11 39559147 39559324 + 2 NA Intergenic Intergenic 733895 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 169-4 chr1 86315964 86316091 + 2 NA Intergenic Intergenic 41660 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 474-74 chr13 56623366 56623668 + 2 NA Intergenic L1MA4A|LINE|L1 -517401 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 776-60 chr9 29587712 29588285 + 2 NA Intergenic Intergenic -374397 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 266-58 chr11 24182048 24182184 + 2 NA Intergenic Intergenic -314937 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 459-166 chr20 63255011 63255332 + 2 NA promoter-TSS (NM_152864) promoter-TSS (NM_152864) -708 NM_152864 128414 Hs.46627 NM_152864 ENSG00000101198 NKAIN4 C20orf58|FAM77A|bA261N11.2 sodium/potassium transporting ATPase interacting 4 protein-coding 335-232 chr2 17050496 17050711 + 2 NA Intergenic L2c|LINE|L2 -384769 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 629-142 chr9 80422395 80422909 + 2 NA Intergenic L2a|LINE|L2 447629 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 353-316 chr3 27216872 27217074 + 2 NA promoter-TSS (NM_001031741) promoter-TSS (NM_001031741) -450 NM_001031741 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 322-234 chr2 26163506 26163793 + 2 NA Intergenic Intergenic -9439 NM_001168241 150946 Hs.187912 NM_001168241 ENSG00000157833 GAREM2 FAM59B|GAREML GRB2 associated regulator of MAPK1 subtype 2 protein-coding 388-381 chrX 100143075 100143317 + 2 NA Intergenic L1MEf|LINE|L1 267077 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 258-3 chr1 30202000 30202152 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -164464 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 381-268 chr4 43003066 43003383 + 2 NA intron (NM_001080476, intron 2 of 3) L1PA4|LINE|L1 109958 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 384-130 chr15 98191220 98191432 + 2 NA Intergenic AluSx1|SINE|Alu -102573 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 490-200 chr4 64949905 64950230 + 2 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 54433 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 248-154 chr17 61332972 61333147 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 34645 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 316-336 chr22 34485981 34486210 + 2 NA Intergenic L1ME4a|LINE|L1 511821 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 341-18 chr1 73334290 73334521 + 2 NA intron (NR_110676, intron 3 of 3) L1M4b|LINE|L1 28235 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 244-323 chr6 71732826 71733012 + 2 NA Intergenic MIRb|SINE|MIR -153784 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 200-186 chr4 31034793 31034974 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -136261 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 405-193 chr22 34171696 34171929 + 2 NA Intergenic Intergenic -248924 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 207-231 chr4 184123439 184123621 + 2 NA intron (NM_153343, intron 3 of 7) intron (NM_153343, intron 3 of 7) 94343 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 377-188 chr2 24500426 24500652 + 2 NA intron (NM_001362952, intron 1 of 23) intron (NM_001362952, intron 1 of 23) 8662 NM_001362952 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 569-78 chr18 63492765 63493152 + 2 NA exon (NM_002639, exon 5 of 7) exon (NM_002639, exon 5 of 7) 16000 NM_002639 5268 Hs.55279 NM_002639 ENSG00000206075 SERPINB5 PI5|maspin serpin family B member 5 protein-coding 398-274 chr5 85361199 85361483 + 2 NA Intergenic Intergenic -921103 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 271-257 chr3 6928517 6928723 + 2 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -34603 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 284-272 chr3 180530533 180530719 + 2 NA Intergenic L1M1|LINE|L1 -71537 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 361-343 chr5 4157159 4157415 + 2 NA Intergenic L1MCc|LINE|L1 561455 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 314-625 chrX 110773798 110774020 + 2 NA intron (NR_159734, intron 2 of 12) L1MB1|LINE|L1 21908 NM_001367208 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 344-135 chr14 58025162 58025495 + 2 NA intron (NM_001001872, intron 5 of 7) intron (NM_001001872, intron 5 of 7) 126885 NM_001320173 145407 Hs.26766 NM_001001872 ENSG00000139971 ARMH4 C14orf37|UT2|c14_5376 armadillo like helical domain containing 4 protein-coding 189-25 chr10 126691147 126691306 + 2 NA Intergenic L1M1|LINE|L1 -20716 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 371-112 chr14 81233408 81233631 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -12129 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 222-368 chr8 88764378 88764575 + 2 NA Intergenic Intergenic -436993 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 562-101 chr2 34025988 34026493 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -40986 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 396-30 chr1 201180515 201180838 + 2 NA Intergenic Intergenic -9094 NM_001288564 252839 Hs.181444 NM_016456 ENSG00000116857 TMEM9 DERM4|TMEM9A transmembrane protein 9 protein-coding 209-320 chr8 85072293 85072423 + 2 NA Intergenic Intergenic -34880 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 274-171 chr18 6589375 6589645 + 2 NA intron (NR_120518, intron 5 of 5) intron (NR_120518, intron 5 of 5) 78094 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 280-120 chr14 55791583 55791772 + 2 NA intron (NR_026796, intron 3 of 3) MER87|LTR|ERV1 4997 NR_026796 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 526-218 chr6 124804030 124804491 + 2 NA intron (NM_001040214, intron 5 of 6) intron (NM_001040214, intron 5 of 6) -158285 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 198-110 chr19 53326408 53326551 + 2 NA Intergenic L1M4|LINE|L1 -7240 NM_001321524 91664 Hs.720672 NM_138374 ENSG00000213799 ZNF845 - zinc finger protein 845 protein-coding 157-110 chr6 85777925 85778023 + 2 NA Intergenic L1M1|LINE|L1 -99241 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 639-84 chr3 165657051 165657510 + 2 NA Intergenic L1MB8|LINE|L1 180143 NR_137635 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 228-384 chrX 75002984 75003144 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -77612 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 178-28 chr11 10752755 10752903 + 2 NA intron (NM_014633, intron 2 of 24) intron (NM_014633, intron 2 of 24) 1583 NM_001346279 9646 Hs.725151 NM_014633 ENSG00000198730 CTR9 SH2BP1|TSBP|p150|p150TSP CTR9 homolog, Paf1/RNA polymerase II complex component protein-coding 293-104 chr13 67647361 67647614 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 275100 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 544-173 chr5 31388635 31389029 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 143261 NM_013235 29102 Hs.97997 NM_013235 ENSG00000113360 DROSHA ETOHI2|HSA242976|RANSE3L|RN3|RNASE3L|RNASEN drosha ribonuclease III protein-coding 237-326 chr6 55653293 55653472 + 2 NA Intergenic Intergenic -74168 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 332-35 chr1 204919125 204919422 + 2 NA intron (NM_001160332, intron 1 of 27) AluSx|SINE|Alu -24953 NM_001160331 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 319-356 chr4 4595397 4595611 + 2 NA intron (NR_037888, intron 2 of 5) MLT1F|LTR|ERVL-MaLR -53161 NM_001346282 53407 Hs.584913 NM_016930 ENSG00000168818 STX18 Ufe1 syntaxin 18 protein-coding 304-308 chr21 21978218 21978387 + 2 NA Intergenic Intergenic 120157 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 417-48 chr11 71291946 71292307 + 2 NA Intergenic L1MA3|LINE|L1 -67330 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 434-220 chr5 36437734 36437998 + 2 NA Intergenic Intergenic -135964 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 405-248 chr5 63613530 63613788 + 2 NA Intergenic Intergenic 348633 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 283-281 chr3 9901256 9901425 + 2 NA Intergenic MIRc|SINE|MIR -1272 NM_153483 132014 Hs.390823 NM_144640 ENSG00000163701 IL17RE - interleukin 17 receptor E protein-coding 313-211 chr18 6418216 6418460 + 2 NA Intergenic Intergenic -3079 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 403-64 chr12 17185717 17185922 + 2 NA Intergenic Intergenic 197072 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 285-415 chr8 84525638 84525824 + 2 NA intron (NM_001354308, intron 2 of 9) L1MEc|LINE|L1 110247 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 549-47 chr12 70023340 70023702 + 2 NA Intergenic L1MA2|LINE|L1 198294 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 164-83 chr4 24919357 24919456 + 2 NA intron (NM_173463, intron 1 of 12) intron (NM_173463, intron 1 of 12) -6428 NM_001130726 91050 Hs.106432 NM_173463 ENSG00000181982 CCDC149 - coiled-coil domain containing 149 protein-coding 300-18 chr1 162937842 162938068 + 2 NA Intergenic Intergenic -69140 NM_178550 339512 Hs.407631 NM_178550 ENSG00000185860 CCDC190 C1orf110 coiled-coil domain containing 190 protein-coding 252-357 chr6 21209341 21209541 + 2 NA intron (NM_017774, intron 15 of 15) intron (NM_017774, intron 15 of 15) 302451 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 620-65 chr2 84627650 84628165 + 2 NA intron (NM_001370, intron 29 of 76) intron (NM_001370, intron 29 of 76) 111452 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 439-148 chr2 156950023 156950278 + 2 NA Intergenic Intergenic -307555 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 217-169 chr2 39466618 39466770 + 2 NA intron (NR_037875, intron 3 of 5) HAL1ME|LINE|L1 29278 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 337-313 chr20 45321829 45322071 + 2 NA Intergenic Intergenic -13421 NM_003833 8785 Hs.278489 NM_003833 ENSG00000124159 MATN4 - matrilin 4 protein-coding 243-151 chr16 55029289 55029475 + 2 NA Intergenic L1MEb|LINE|L1 98183 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 342-287 chr20 42855758 42855992 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -112868 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 450-145 chr2 115691435 115691820 + 2 NA intron (NM_001321912, intron 8 of 25) L1M5|LINE|L1 347812 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 261-288 chr4 90869732 90869959 + 2 NA intron (NM_001145065, intron 8 of 10) L1MA2|LINE|L1 634814 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 356-125 chr13 31187634 31187898 + 2 NA Intergenic Intergenic -12209 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 538-185 chr4 159592570 159592938 + 2 NA Intergenic Intergenic 185030 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 485-45 chr11 72513225 72513478 + 2 NA Intergenic L1M4a2|LINE|L1 -57305 NR_126364 101928555 Hs.376950 NR_126364 ENSG00000227467 LINC01537 - long intergenic non-protein coding RNA 1537 ncRNA 127-52 chr2 187289005 187289118 + 2 NA Intergenic Intergenic 159191 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 534-178 chr4 81246269 81246640 + 2 NA Intergenic Intergenic -31232 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 353-398 chr5 8201863 8202062 + 2 NA Intergenic Intergenic 255602 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 365-373 chr7 52358716 52358953 + 2 NA Intergenic HAL1|LINE|L1 -676799 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 340-193 chr16 65445088 65445328 + 2 NA intron (NR_027755, intron 2 of 8) L1PA8|LINE|L1 131092 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 301-403 chr6 140622884 140623085 + 2 NA Intergenic LTR37-int|LTR|ERV1 -60830 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 344-19 chr1 105763682 105763914 + 2 NA Intergenic L2c|LINE|L2 -144863 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 388-147 chr2 15085239 15085436 + 2 NA Intergenic Intergenic 452620 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 248-337 chr6 24318259 24318458 + 2 NA intron (NM_016356, intron 2 of 9) L1MC4a|LINE|L1 -38545 NM_181337 353219 Hs.697888 NM_181337 ENSG00000146049 KAAG1 RU2AS kidney associated antigen 1 protein-coding 401-54 chr11 79770989 79771328 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -330128 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 508-183 chr5 27460257 27460605 + 2 NA Intergenic Intergenic -11861 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 207-125 chr2 978803 978984 + 2 NA intron (NM_018968, intron 1 of 16) intron (NM_018968, intron 1 of 16) -27501 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 489-118 chr18 64354453 64354936 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -94639 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 532-157 chr3 19273958 19274390 + 2 NA intron (NM_144633, intron 2 of 15) MIR|SINE|MIR 40757 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 278-52 chr11 45095687 45095920 + 2 NA 5' UTR (NM_001359633, exon 2 of 8) 5' UTR (NM_001359633, exon 2 of 8) 1790 NM_001359633 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 272-138 chr16 20521844 20522106 + 2 NA Intergenic Intergenic 54392 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 217-349 chr7 45866925 45867054 + 2 NA Intergenic Intergenic -21499 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 258-303 chr4 178645209 178645435 + 2 NA Intergenic L1MA3|LINE|L1 -737386 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 687-41 chr16 12668127 12668735 + 2 NA intron (NM_001099455, intron 2 of 2) L1MEi|LINE|L1 -51890 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 340-490 chr6 164456296 164456553 + 2 NA Intergenic Intergenic 365639 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 319-559 chr8 137938920 137939218 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 144476 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 371-198 chr2 184533919 184534126 + 2 NA Intergenic Intergenic -64507 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 317-441 chr7 15076270 15076535 + 2 NA Intergenic Intergenic -101544 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 150-111 chr8 137909994 137910115 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 173491 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 323-391 chr5 10098997 10099202 + 2 NA Intergenic L1M7|LINE|L1 150789 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 361-174 chr17 71010214 71010440 + 2 NA Intergenic X6B_LINE|LINE|CR1 191852 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 211-204 chr4 19130211 19130345 + 2 NA Intergenic L1MB7|LINE|L1 -1108403 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 352-109 chr12 67909020 67909332 + 2 NA Intergenic Intergenic -20059 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 596-44 chr12 16927298 16927658 + 2 NA Intergenic L1M3c|LINE|L1 -61269 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 272-305 chr4 61685792 61686059 + 2 NA intron (NM_001371342, intron 4 of 20) intron (NM_001371342, intron 4 of 20) 475840 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 976-18 chr3 163127596 163128417 + 2 NA Intergenic L1PB1|LINE|L1 175295 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 239-316 chr5 74659536 74659704 + 2 NA intron (NM_001292004, intron 1 of 13) intron (NM_001292004, intron 1 of 13) -18196 NM_001256576 8507 Hs.104925 NM_003633 ENSG00000171617 ENC1 CCL28|ENC-1|KLHL35|KLHL37|NRPB|PIG10|TP53I10 ectodermal-neural cortex 1 protein-coding 384-340 chr7 19220787 19221093 + 2 NA Intergenic L3|LINE|CR1 -75519 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 262-393 chr7 31225445 31225657 + 2 NA Intergenic L1MA4A|LINE|L1 115175 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 345-92 chr11 60316095 60316343 + 2 NA Intergenic LTR108b_Mam|LTR|ERVL -18663 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 631-106 chr5 151189052 151189628 + 2 NA intron (NM_015621, intron 4 of 8) L1ME1|LINE|L1 -22794 NR_160730 105378230 NR_160730 LOC105378230 - uncharacterized LOC105378230 ncRNA 766 chr1 106278955 106279572 + 2 NA Intergenic L1MD2|LINE|L1 -251010 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 351-483 chr8 76013712 76013966 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -392815 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 536-173 chr4 57725058 57725506 + 2 NA Intergenic Intergenic 299410 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 305-563 chr9 95351711 95351881 + 2 NA Intergenic AluSx1|SINE|Alu -34087 NM_001243744 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 352-395 chr4 187498847 187499160 + 2 NA intron (NR_038931, intron 1 of 4) (AATA)n|Simple_repeat|Simple_repeat 6610 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 399-255 chr5 122119556 122119932 + 2 NA Intergenic Intergenic -9802 NM_207317 133923 Hs.729673 NM_207317 ENSG00000164185 ZNF474 - zinc finger protein 474 protein-coding 357-390 chr6 67761318 67761523 + 2 NA Intergenic L1MA7|LINE|L1 -293931 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 419-36 chr10 79017360 79017757 + 2 NA intron (NR_015429, intron 3 of 7) AluJo|SINE|Alu 49890 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 314-460 chr5 51299884 51300049 + 2 NA Intergenic Intergenic 83366 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 342-131 chr13 78861709 78861976 + 2 NA Intergenic Intergenic -21792 NR_046869 100874126 Hs.577893 NR_046869 LINC00331 NCRNA00331 long intergenic non-protein coding RNA 331 ncRNA 406-133 chr2 21399970 21400355 + 2 NA Intergenic Intergenic 276176 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 276-493 chrX 89026852 89027082 + 2 NA Intergenic L1PB3|LINE|L1 279742 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 438-140 chr2 238671355 238671634 + 2 NA Intergenic L1ME3|LINE|L1 -115995 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 364-133 chr14 75610181 75610375 + 2 NA intron (NM_001195283, intron 1 of 9) intron (NM_001195283, intron 1 of 9) 4738 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 271-196 chr2 59658178 59658348 + 2 NA Intergenic Intergenic 440555 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 349-366 chr4 38273119 38273353 + 2 NA Intergenic Intergenic -93678 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 426-185 chr3 90005882 90006117 + 2 NA Intergenic Intergenic 898378 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 521-19 chr1 233572199 233572670 + 2 NA Intergenic Intergenic -41672 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 257-129 chr16 3497237 3497419 + 2 NA promoter-TSS (NM_001353382) promoter-TSS (NM_001353382) -676 NM_001353384 646174 Hs.632224 NM_001080524 ENSG00000215131 C16orf90 - chromosome 16 open reading frame 90 protein-coding 324-272 chr2 111000265 111000460 + 2 NA intron (NM_001371254, intron 15 of 18) MLT1F1-int|LTR|ERVL-MaLR 115226 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 250-67 chr11 58935735 58935915 + 2 NA intron (NR_033853, intron 5 of 5) L1MA10|LINE|L1 -7424 NM_001220496 92292 Hs.38085 NM_080661 ENSG00000166840 GLYATL1 GATF-C|GNAT glycine-N-acyltransferase like 1 protein-coding 257-123 chr15 47234221 47234463 + 2 NA intron (NM_001198999, intron 1 of 19) (TA)n|Simple_repeat|Simple_repeat 50253 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 384-410 chr9 138081231 138081460 + 2 NA intron (NM_001243812, intron 35 of 45) intron (NM_001243812, intron 35 of 45) -36274 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 262-55 chr10 75324134 75324304 + 2 NA intron (NR_038226, intron 2 of 3) L1ME1|LINE|L1 27836 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 321-399 chr3 192007921 192008122 + 2 NA Intergenic LTR78B|LTR|ERV1 -230609 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 379-217 chr3 96066246 96066576 + 2 NA Intergenic Intergenic -293553 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 731-37 chr19 52486415 52487036 + 2 NA intron (NM_001366182, intron 3 of 5) intron (NM_001366182, intron 3 of 5) 33172 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 373-230 chr2 229112505 229112835 + 2 NA intron (NM_001330157, intron 1 of 1) AluSx1|SINE|Alu 119422 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 194-96 chr2 142823149 142823270 + 2 NA Intergenic Intergenic -54455 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 419-295 chr8 108939268 108939553 + 2 NA Intergenic L1ME3|LINE|L1 -147218 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 294-181 chr18 69907759 69907961 + 2 NA intron (NM_001303619, intron 1 of 4) L1MA7|LINE|L1 40013 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 457-220 chr6 146018237 146018526 + 2 NA Intergenic Intergenic -9326 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 259-392 chr8 79935820 79936038 + 2 NA intron (NM_014018, intron 2 of 2) intron (NM_014018, intron 2 of 2) -64192 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 374-161 chr19 24299052 24299258 + 2 NA Intergenic ALR/Alpha|Satellite|centr -135708 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 312-230 chr2 44912337 44912619 + 2 NA Intergenic Intergenic 26410 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 361-104 chr12 47109489 47109776 + 2 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) -29673 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 124-2 chr1 147688751 147688830 + 2 NA Intergenic L1MA8|LINE|L1 -18266 NR_136636 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 594-31 chr11 97326979 97327402 + 2 NA Intergenic L1PA12|LINE|L1 818765 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 475-303 chrX 25372990 25373340 + 2 NA Intergenic Intergenic -357200 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 351-97 chr12 98116156 98116358 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -120809 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 360-213 chr2 58032752 58032960 + 2 NA intron (NM_001288837, intron 3 of 15) MER70A|LTR|ERVL -13786 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 328-443 chr5 39927456 39927728 + 2 NA Intergenic L1MC4|LINE|L1 -124699 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 244-385 chr9 72322258 72322448 + 2 NA intron (NR_110952, intron 2 of 4) intron (NR_110952, intron 2 of 4) 16917 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 323-88 chr11 79882901 79883069 + 2 NA Intergenic L2b|LINE|L2 -441955 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 720-94 chr9 69709350 69709823 + 2 NA TTS (NM_001366940) TTS (NM_001366940) -37215 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 255-212 chr2 174220217 174220418 + 2 NA intron (NM_001011708, intron 3 of 9) L2b|LINE|L2 28215 NM_001011708 29789 Hs.157351 NM_013341 ENSG00000138430 OLA1 DOC45|GBP45|GTBP9|GTPBP9|PTD004 Obg like ATPase 1 protein-coding 431-8 chr1 55077178 55077583 + 2 NA intron (NM_015306, intron 61 of 67) MIR3|SINE|MIR 37158 NR_110451 255738 Hs.18844 NM_174936 ENSG00000169174 PCSK9 FH3|HCHOLA3|LDLCQ1|NARC-1|NARC1|PC9 proprotein convertase subtilisin/kexin type 9 protein-coding 213-231 chr5 45375166 45375302 + 2 NA intron (NM_021072, intron 4 of 7) intron (NM_021072, intron 4 of 7) 321146 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 406-32 chr10 22828602 22828899 + 2 NA Intergenic MER61-int|LTR|ERV1 -99274 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 132-12 chr10 115308285 115308395 + 2 NA intron (NM_207303, intron 17 of 28) intron (NM_207303, intron 17 of 28) 214975 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 341-458 chr6 38463917 38464209 + 2 NA intron (NM_001172418, intron 5 of 10) MLT1B|LTR|ERVL-MaLR -17533 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 357-312 chr4 70299359 70299633 + 2 NA Intergenic Intergenic -35485 NM_033122 85438 Hs.120316 NM_033122 ENSG00000145309 CABS1 C4orf35|CLPH|NYD-SP26 calcium binding protein, spermatid associated 1 protein-coding 525-59 chr12 113310084 113310447 + 2 NA exon (NM_024959, exon 12 of 16) exon (NM_024959, exon 12 of 16) 18742 NR_106820 102465457 NR_106820 ENSG00000274822 MIR6762 hsa-mir-6762 microRNA 6762 ncRNA 547-94 chr2 11660784 11661150 + 2 NA intron (NM_012344, intron 2 of 3) intron (NM_012344, intron 2 of 3) 9228 NM_012344 23620 Hs.131138 NM_012344 ENSG00000169006 NTSR2 NTR2 neurotensin receptor 2 protein-coding 302-294 chr3 109169296 109169472 + 2 NA Intergenic Intergenic -8781 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 334-393 chr4 112095892 112096203 + 2 NA Intergenic L2c|LINE|L2 -49407 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 195-104 chr2 72755316 72755439 + 2 NA intron (NR_135774, intron 1 of 19) L2b|LINE|L2 70656 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 246-61 chr11 15851910 15852107 + 2 NA Intergenic MIRc|SINE|MIR 117613 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 218-194 chr20 60729022 60729200 + 2 NA Intergenic L2b|LINE|L2 164549 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 263-392 chr7 36742049 36742278 + 2 NA Intergenic Intergenic -17614 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 277-158 chr18 6595158 6595415 + 2 NA Intergenic Intergenic 83870 NR_120518 100130480 Hs.646267 NM_001243517 ENSG00000265944 LINC01387 C18orf64 long intergenic non-protein coding RNA 1387 ncRNA 429-201 chr3 146856158 146856411 + 2 NA Intergenic MIRc|SINE|MIR -65639 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 180-43 chr14 22053068 22053235 + 2 NA Intergenic Intergenic 379602 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 407-286 chr7 32214204 32214545 + 2 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 84954 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 302-72 chr11 35970635 35970863 + 2 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 26687 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 314-38 chr1 198789852 198790102 + 2 NA Intergenic Intergenic 69005 NR_029612 406955 NR_029612 ENSG00000207975 MIR181B1 MIRN181B1|mir-181b-1 microRNA 181b-1 ncRNA 617-2 chr1 40454731 40455164 + 2 NA intron (NM_001369565, intron 3 of 5) intron (NM_001369565, intron 3 of 5) 4471 NM_023070 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 402-322 chr7 86132740 86132978 + 2 NA Intergenic L1MC|LINE|L1 -511050 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 411-276 chr7 103421992 103422355 + 2 NA intron (NR_135802, intron 2 of 17) intron (NR_135802, intron 2 of 17) 21038 NR_120442 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 375-178 chr18 9653236 9653477 + 2 NA Intergenic Intergenic 38092 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 436-115 chr18 24329392 24329781 + 2 NA intron (NM_080597, intron 7 of 27) intron (NM_080597, intron 7 of 27) 7911 NR_031724 100302195 NR_031724 ENSG00000212051 MIR320C2 MIR320C-2|MIRN320C2|hsa-mir-320c-2|mir-320c-2 microRNA 320c-2 ncRNA 305-262 chr2 84031884 84032132 + 2 NA Intergenic Intergenic -258674 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 307-14 chr1 88907623 88907861 + 2 NA Intergenic Intergenic -16175 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 322-555 chr8 140214469 140214658 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -114028 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 270-9 chr1 67961914 67962091 + 2 NA intron (NR_040077, intron 1 of 9) MER45R|DNA|hAT-Tip100 89629 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 415-52 chr12 4336652 4336976 + 2 NA intron (NM_020375, intron 2 of 5) intron (NM_020375, intron 2 of 5) 15601 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 642-35 chr15 39208194 39208719 + 2 NA Intergenic Intergenic -42213 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 316-67 chr10 53550528 53550781 + 2 NA Intergenic L1MEf|LINE|L1 -778954 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 369-419 chr8 122804885 122805238 + 2 NA intron (NM_001362797, intron 1 of 4) intron (NM_001362797, intron 1 of 4) 23406 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 592-85 chr2 106060943 106061468 + 2 NA Intergenic Intergenic -4483 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 511-288 chrX 86542669 86543101 + 2 NA intron (NM_001139515, intron 3 of 11) intron (NM_001139515, intron 3 of 11) 279917 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 336-357 chr22 47922219 47922452 + 2 NA Intergenic Intergenic 290661 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 541-97 chr18 57770907 57771238 + 2 NA intron (NM_005603, intron 1 of 27) AluSz|SINE|Alu 32243 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 360-289 chr3 5993805 5993997 + 2 NA Intergenic MIRc|SINE|MIR -743646 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 451-28 chr10 52052539 52052971 + 2 NA intron (NM_001098512, intron 5 of 17) THE1B|LTR|ERVL-MaLR 261373 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 224-132 chr19 58296853 58296987 + 2 NA 3' UTR (NM_021089, exon 4 of 4) 3' UTR (NM_021089, exon 4 of 4) -8454 NR_144445 105372481 Hs.435404 NR_144445 ENSG00000142396 ERVK3-1 - endogenous retrovirus group K3 member 1 ncRNA 272-489 chrX 73240569 73240833 + 2 NA Intergenic L1M4|LINE|L1 -25850 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 207-55 chr11 82202083 82202276 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 201734 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 466-252 chr7 55623081 55623370 + 2 NA Intergenic LTR49|LTR|ERV1 -50723 NM_030796 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 712-76 chr5 92538464 92539164 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 1032529 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 169-132 chr8 61135137 61135253 + 2 NA Intergenic Intergenic -152775 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 285-285 chr3 159978767 159978982 + 2 NA intron (NR_108088, intron 9 of 9) L1MEg|LINE|L1 -9961 NM_000882 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 250-166 chr17 70691445 70691690 + 2 NA Intergenic L1M6|LINE|L1 510612 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 515-136 chr2 220946329 220946756 + 2 NA Intergenic Intergenic 625762 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 588-111 chr4 68119416 68119835 + 2 NA intron (NM_207407, intron 1 of 9) Tigger1|DNA|TcMar-Tigger 10244 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 636-79 chr2 115718902 115719336 + 2 NA intron (NM_001321912, intron 8 of 25) intron (NM_001321912, intron 8 of 25) 375304 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 280-297 chr4 99706077 99706273 + 2 NA Intergenic L1M5|LINE|L1 -51496 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 390-169 chr2 5712358 5712718 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 20154 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 320-437 chr5 41654031 41654292 + 2 NA Intergenic L2c|LINE|L2 -143560 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 605-62 chr20 6313646 6314221 + 2 NA Intergenic L1PA15-16|LINE|L1 -112799 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 391-118 chr15 58964964 58965300 + 2 NA Intergenic AluJo|SINE|Alu -22531 NM_001330331 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 311-105 chr12 87044832 87045092 + 2 NA Intergenic Intergenic -205962 NM_013244 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 350-126 chr14 32515231 32515461 + 2 NA intron (NM_004274, intron 2 of 13) THE1B|LTR|ERVL-MaLR 186048 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 268-283 chr4 79641631 79641866 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 149155 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 330-443 chr5 151186749 151186975 + 2 NA intron (NM_015621, intron 5 of 8) L2c|LINE|L2 -25272 NR_160730 105378230 NR_160730 LOC105378230 - uncharacterized LOC105378230 ncRNA 266-389 chr7 31886616 31886875 + 2 NA intron (NM_001322059, intron 3 of 17) L2c|LINE|L2 183662 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 294-80 chr12 37993514 37993715 + 2 NA Intergenic ALR/Alpha|Satellite|centr -323160 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 281-162 chr17 55484143 55484395 + 2 NA Intergenic L1MC5a|LINE|L1 -62434 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 354-277 chr22 48834532 48834829 + 2 NA Intergenic L1ME4a|LINE|L1 -32090 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 200-16 chr1 191128335 191128500 + 2 NA Intergenic L1PA16|LINE|L1 100081 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 578-24 chr10 24191029 24191542 + 2 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -17506 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 396-247 chr4 36708339 36708686 + 2 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -66612 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 231-191 chr20 33896553 33896761 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 85309 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 448-286 chr8 87970680 87971036 + 2 NA Intergenic Intergenic -96843 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 282-221 chr2 121868702 121868955 + 2 NA Intergenic Intergenic 113177 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 265-355 chr7 31267300 31267481 + 2 NA Intergenic L1ME3A|LINE|L1 73336 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 523-293 chrX 112136867 112137279 + 2 NA intron (NM_001004308, intron 2 of 2) L1MA10|LINE|L1 54048 NM_001004308 340595 Hs.368140 NM_001004308 ENSG00000187823 RTL4 Mar4|Mart4|SIRH11|ZCCHC16 retrotransposon Gag like 4 protein-coding 533-238 chr8 129078850 129079213 + 2 NA Intergenic Intergenic -113030 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 116-19 chr2 78554953 78555020 + 2 NA intron (NR_136311, intron 2 of 2) intron (NR_136311, intron 2 of 2) 9455 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 282-224 chr2 123753935 123754178 + 2 NA Intergenic L1ME3B|LINE|L1 271118 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 251-224 chr3 2578562 2578780 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -313544 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 323-296 chr20 32914701 32914872 + 2 NA intron (NM_001143967, intron 17 of 26) THE1D|LTR|ERVL-MaLR 55863 NM_001143967 388795 NM_001143967 ENSG00000215529 EFCAB8 - EF-hand calcium binding domain 8 protein-coding 281-327 chr4 101312649 101312895 + 2 NA intron (NM_001130691, intron 1 of 12) intron (NM_001130691, intron 1 of 12) 17642 NR_031656 100302193 NR_031656 ENSG00000221265 MIR1255A MIRN1255A|hsa-mir-1255a microRNA 1255a ncRNA 295-372 chr5 21092292 21092508 + 2 NA Intergenic ERVL-int|LTR|ERVL -367080 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 373-240 chr20 58529631 58529852 + 2 NA intron (NR_034147, intron 5 of 6) L1ME1|LINE|L1 -14342 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 190-72 chr17 75725078 75725219 + 2 NA intron (NM_001005619, intron 1 of 38) intron (NM_001005619, intron 1 of 38) 452 NM_001005619 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 214-223 chr3 165120544 165120691 + 2 NA Intergenic L1PA13|LINE|L1 -42121 NM_001041 6476 Hs.429596 NM_001041 ENSG00000090402 SI - sucrase-isomaltase protein-coding 453-42 chr11 99602247 99602531 + 2 NA intron (NM_175566, intron 1 of 21) LTR101_Mam|LTR|ERVL 46244 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 530-174 chr4 35526230 35526565 + 2 NA Intergenic L1MA9|LINE|L1 717542 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 218-113 chr16 13406576 13406749 + 2 NA Intergenic MIRb|SINE|MIR 505064 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 361-412 chr7 49237944 49238155 + 2 NA Intergenic L1PA13|LINE|L1 313502 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 354-215 chr2 99721901 99722180 + 2 NA intron (NM_001025108, intron 10 of 23) L1ME2|LINE|L1 -232023 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 307-393 chr5 124320956 124321222 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 117431 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 526-157 chr22 25156345 25156704 + 2 NA intron (NM_001145206, intron 4 of 10) (TG)n|Simple_repeat|Simple_repeat -43334 NM_004076 1417 Hs.533022 NM_004076 ENSG00000100053 CRYBB3 CATCN2|CRYB3|CTRCT22 crystallin beta B3 protein-coding 123-55 chr7 109235496 109235575 + 2 NA Intergenic Intergenic -350948 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 297-477 chr8 98348007 98348198 + 2 NA Intergenic L1MC1|LINE|L1 45636 NR_162095 113218497 NR_162095 MIR9903 - microRNA 9903 ncRNA 358-291 chr3 39053617 39053904 + 2 NA intron (NM_001346228, intron 1 of 18) intron (NM_001346228, intron 1 of 18) 1468 NM_001346228 57599 Hs.109778 NM_020839 ENSG00000114742 WDR48 P80|SPG60|UAF1 WD repeat domain 48 protein-coding 255-52 chr11 17998290 17998430 + 2 NA intron (NR_104040, intron 5 of 11) AluJr|SINE|Alu 14687 NM_012139 26297 Hs.32470 NM_012139 ENSG00000129158 SERGEF DELGEF|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 431-48 chr10 107111251 107111563 + 2 NA intron (NM_001206569, intron 1 of 25) L1M3a|LINE|L1 53299 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 338-23 chr1 109944140 109944319 + 2 NA Intergenic Intergenic 33380 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 293-433 chr8 81064557 81064810 + 2 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 47385 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 267-134 chr16 49074838 49075031 + 2 NA Intergenic L1M4a1|LINE|L1 206904 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 250-169 chr17 74157430 74157674 + 2 NA Intergenic MLT2B3|LTR|ERVL -46126 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 216-4 chr1 40412086 40412234 + 2 NA intron (NM_022733, intron 4 of 9) L1ME4c|LINE|L1 15360 NM_001198980 64744 Hs.15200 NM_022733 ENSG00000084070 SMAP2 SMAP1L small ArfGAP2 protein-coding 206-112 chr2 49636645 49636780 + 2 NA Intergenic Intergenic 337491 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 236-318 chr7 29213778 29213961 + 2 NA intron (NM_001293072, intron 1 of 12) intron (NM_001293072, intron 1 of 12) -4899 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 398-244 chr4 95068823 95069170 + 2 NA intron (NM_001256793, intron 1 of 10) MER6B|DNA|TcMar-Tigger 17319 NM_001256793 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 441-161 chr3 88341479 88341891 + 2 NA intron (NM_001368165, intron 1 of 1) MARNA|DNA|TcMar-Mariner 3229 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 402-301 chr6 112766746 112767112 + 2 NA Intergenic Intergenic 419599 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 337-130 chr13 45762999 45763277 + 2 NA Intergenic L2b|LINE|L2 60669 NM_001286342 220082 Hs.186363 NM_152719 ENSG00000174015 SPERT CBY2|NURIT spermatid associated protein-coding 143-34 chr17 77336824 77336950 + 2 NA intron (NM_006640, intron 1 of 10) L1MEf|LINE|L1 17372 NM_006640 10801 Hs.440932 NM_006640 ENSG00000184640 SEPTIN9 AF17q25|MSF|MSF1|NAPB|PNUTL4|SEPT9|SINT1|SeptD1 septin 9 protein-coding 268-263 chr3 188923149 188923327 + 2 NA Intergenic AluJr|SINE|Alu 24401 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 522-259 chr8 124963354 124963718 + 2 NA Intergenic AluY|SINE|Alu -9759 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 235-188 chr2 176959668 176959823 + 2 NA Intergenic Intergenic 252666 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 230-302 chr5 85468890 85469091 + 2 NA Intergenic LTR29|LTR|ERV1 -813454 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 370-21 chr1 179772661 179772966 + 2 NA intron (NM_001329719, intron 1 of 4) MLT1J|LTR|ERVL-MaLR 29522 NM_173509 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 269-312 chr5 45083853 45084010 + 2 NA Intergenic L1PA7|LINE|L1 274984 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 212-337 chr8 136923120 136923290 + 2 NA Intergenic Intergenic 392407 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 540-132 chr21 27739459 27739956 + 2 NA intron (NR_024357, intron 1 of 3) intron (NR_024357, intron 1 of 3) 17328 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 570-171 chr6 51734203 51734594 + 2 NA intron (NM_170724, intron 60 of 60) intron (NM_170724, intron 60 of 60) 112528 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 434-40 chr10 83957899 83958285 + 2 NA Intergenic Intergenic -181417 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 246-408 chr8 109849594 109849780 + 2 NA Intergenic L1ME3B|LINE|L1 126084 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 590-147 chr6 79455629 79456100 + 2 NA Intergenic Intergenic 81566 NM_181714 167691 Hs.21945 NM_181714 ENSG00000135338 LCA5 C6orf152 lebercilin LCA5 protein-coding 211-137 chr2 35917835 35918007 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 437649 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 208-22 chr10 57457636 57457797 + 2 NA Intergenic MER76|LTR|ERVL -153157 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 379-66 chr11 109286032 109286316 + 2 NA Intergenic L1ME3A|LINE|L1 -136016 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 154-60 chr20 52814692 52814812 + 2 NA Intergenic Intergenic -157606 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 752-63 chr5 122600544 122601237 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -16290 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 203-205 chr6 109954114 109954266 + 2 NA Intergenic L1MEf|LINE|L1 -24066 NM_001286099 2830 Hs.46332 NM_005284 ENSG00000146360 GPR6 - G protein-coupled receptor 6 protein-coding 254-236 chr3 7996242 7996434 + 2 NA intron (NR_110131, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 19969 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 228-63 chr12 15827984 15828157 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -38682 NM_004447 2059 Hs.591160 NM_004447 ENSG00000151491 EPS8 DFNB102 epidermal growth factor receptor pathway substrate 8 protein-coding 486-81 chr14 63088576 63088885 + 2 NA Intergenic Intergenic -43272 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 327-153 chr14 65156184 65156400 + 2 NA Intergenic MIRb|SINE|MIR -53597 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 446-99 chr14 43239080 43239519 + 2 NA Intergenic Intergenic 1267984 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 413-70 chr12 90639397 90639649 + 2 NA Intergenic Intergenic -278500 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 383-37 chr10 72540339 72540551 + 2 NA intron (NM_006077, intron 4 of 11) AluJr4|SINE|Alu -16459 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 299-277 chr3 64260910 64261095 + 2 NA intron (NM_001370528, intron 1 of 7) intron (NM_001370528, intron 1 of 7) 7171 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 374-358 chr7 42890116 42890374 + 2 NA Intergenic HERVL74-int|LTR|ERVL 21598 NM_001363436 79020 Hs.698120 NM_024054 ENSG00000136197 C7orf25 - chromosome 7 open reading frame 25 protein-coding 506-261 chr6 162536556 162536924 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -190392 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 382-398 chr8 8434392 8434603 + 2 NA Intergenic Intergenic -48058 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 618-111 chr6 131517333 131517836 + 2 NA Intergenic L1PA15-16|LINE|L1 -55642 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 286-386 chr6 48310970 48311195 + 2 NA Intergenic L2b|LINE|L2 -242393 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 329-171 chr14 87537678 87537986 + 2 NA Intergenic Intergenic 117462 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 375-296 chr4 92967617 92967888 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 663353 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 931-6 chr14 68571915 68572571 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 56544 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 240-428 chr8 133978913 133979081 + 2 NA Intergenic Intergenic 92501 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 581-178 chr8 132965939 132966427 + 2 NA intron (NM_003235, intron 29 of 47) L3|LINE|CR1 80398 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 294-367 chr5 28539007 28539200 + 2 NA Intergenic Intergenic -251438 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 285-247 chr21 22663014 22663240 + 2 NA Intergenic L1M5|LINE|L1 -416157 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 371-418 chr9 108497090 108497418 + 2 NA Intergenic MIRc|SINE|MIR 358732 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 474-76 chr13 85909323 85909753 + 2 NA Intergenic Intergenic -110119 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 346-353 chr4 63151871 63152052 + 2 NA Intergenic L1PB2|LINE|L1 -990196 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 122-20 chr15 70302415 70302508 + 2 NA Intergenic Intergenic 203467 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 385-64 chr12 25807180 25807480 + 2 NA Intergenic Intergenic 66749 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 528-205 chr5 114714025 114714381 + 2 NA intron (NR_130785, intron 1 of 12) L1MC4|LINE|L1 59210 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 154-80 chr4 47097543 47097654 + 2 NA intron (NM_000812, intron 3 of 8) L2a|LINE|L2 66031 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 335-321 chr22 19288137 19288433 + 2 NA intron (NM_007098, intron 1 of 32) MER44B|DNA|TcMar-Tigger 3434 NM_001835 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 297-398 chr6 47325332 47325534 + 2 NA Intergenic L1MA8|LINE|L1 -15528 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 222-125 chr15 95768851 95768965 + 2 NA Intergenic L1MEc|LINE|L1 335815 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 190-178 chr8 121772496 121772642 + 2 NA Intergenic Intergenic -131129 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 259-435 chr9 100866616 100866858 + 2 NA Intergenic L1ME2z|LINE|L1 -161990 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 217-67 chr11 39110212 39110423 + 2 NA Intergenic Intergenic 461459 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 149-15 chr10 48368645 48368765 + 2 NA intron (NM_001323302, intron 3 of 13) intron (NM_001323302, intron 3 of 13) -32907 NM_001278548 5599 Hs.138211 NM_002750 ENSG00000107643 MAPK8 JNK|JNK-46|JNK1|JNK1A2|JNK21B1/2|PRKM8|SAPK1|SAPK1c mitogen-activated protein kinase 8 protein-coding 378-455 chr9 88871083 88871320 + 2 NA Intergenic Intergenic -119662 NM_001142413 286223 Hs.585118 NM_001001938 ENSG00000213694 C9orf47 C9orf108|bA791O21.3 chromosome 9 open reading frame 47 protein-coding 283-40 chr1 228033736 228033963 + 2 NA intron (NM_033131, intron 2 of 3) L1MB7|LINE|L1 26851 NM_033131 89780 Hs.336930 NM_033131 ENSG00000154342 WNT3A - Wnt family member 3A protein-coding 322-156 chr14 66325048 66325326 + 2 NA Intergenic Intergenic -161184 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 336-473 chr5 169089974 169090231 + 2 NA intron (NM_003062, intron 4 of 35) LTR33A_|LTR|ERVL 76875 NR_109897 728095 Hs.145601 NR_109897 LOC728095 - uncharacterized LOC728095 ncRNA 360-485 chr9 27792509 27792802 + 2 NA Intergenic Intergenic -218789 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 333-515 chr6 140917903 140918101 + 2 NA Intergenic MER4C|LTR|ERV1 234188 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 274-402 chr8 127268512 127268683 + 2 NA intron (NR_117099, intron 1 of 3) MIRb|SINE|MIR 23960 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 230-323 chr6 76066951 76067111 + 2 NA intron (NM_001563, intron 1 of 16) L1PB4|LINE|L1 5631 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 288-192 chr2 66570031 66570285 + 2 NA intron (NM_002398, intron 12 of 12) intron (NM_002398, intron 12 of 12) -3872 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 333-551 chr7 132770407 132770589 + 2 NA Intergenic Intergenic 11528 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 186-18 chr10 129245355 129245514 + 2 NA Intergenic L1ME1|LINE|L1 -221807 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 694-5 chr1 205824717 205825222 + 2 NA Intergenic AluSx1|SINE|Alu -11771 NM_173854 254428 Hs.20274 NM_173854 ENSG00000133065 SLC41A1 MgtE solute carrier family 41 member 1 protein-coding 392-25 chr10 43493738 43493948 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie 56732 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 364-152 chr16 10416903 10417187 + 2 NA intron (NM_024997, intron 1 of 11) L1M2|LINE|L1 30984 NR_147927 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 292-355 chr5 106115351 106115577 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 895550 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 324-242 chr19 36823765 36824032 + 2 NA intron (NR_040028, intron 3 of 3) intron (NR_040028, intron 3 of 3) 14129 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 225-39 chr10 82162740 82162940 + 2 NA intron (NR_163251, intron 2 of 9) LTR101_Mam|LTR|ERVL 70080 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 351-193 chr19 14988511 14988692 + 2 NA intron (NR_073589, intron 1 of 8) L1MA8|LINE|L1 -8737 NM_001272087 6511 Hs.515217 NM_005071 ENSG00000105143 SLC1A6 EAAT4 solute carrier family 1 member 6 protein-coding 169-143 chr8 139301613 139301746 + 2 NA Intergenic Intergenic -387638 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 382-156 chr18 71694789 71695137 + 2 NA Intergenic Intergenic 87263 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 320-164 chr14 103989216 103989534 + 2 NA intron (NM_153046, intron 8 of 35) L1M4b|LINE|L1 -46846 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 256-450 chr9 72482271 72482416 + 2 NA Intergenic Intergenic -39458 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 171-99 chr5 8113245 8113372 + 2 NA Intergenic Intergenic 244160 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 185-166 chr5 75691719 75691876 + 2 NA intron (NM_152408, intron 6 of 10) intron (NM_152408, intron 6 of 10) 20658 NM_152408 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 320-305 chr20 19108307 19108498 + 2 NA Intergenic Intergenic -104240 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 466-136 chr2 118916713 118917136 + 2 NA Intergenic L1M5|LINE|L1 -25245 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 225-377 chr8 134532241 134532446 + 2 NA intron (NM_020863, intron 12 of 15) intron (NM_020863, intron 12 of 15) -65728 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 508-121 chr2 212009629 212009896 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 416598 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 461-261 chr8 70457786 70458093 + 2 NA Intergenic Intergenic -13195 NR_110653 101926892 Hs.367827 NR_110653 ENSG00000253967 LOC101926892 - uncharacterized LOC101926892 ncRNA 355-347 chr3 183610643 183610845 + 2 NA Intergenic L1PA4|LINE|L1 -24879 NM_001349417 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 292-228 chr2 132901476 132901744 + 2 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) -13947 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 228-78 chr12 105769599 105769796 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 62923 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 297-303 chr3 144756081 144756333 + 2 NA Intergenic Intergenic 783126 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 207-19 chr1 175671613 175671816 + 2 NA intron (NM_003285, intron 1 of 22) MER53|DNA|hAT 71881 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 319-151 chr14 86374062 86374346 + 2 NA Intergenic Intergenic 439526 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 355-259 chr2 157317999 157318311 + 2 NA TTS (NM_001304345) TTS (NM_001304345) 7669 NM_001304346 57471 Hs.443894 NM_020711 ENSG00000136541 ERMN JN|KIAA1189 ermin protein-coding 299-191 chr2 10651212 10651462 + 2 NA intron (NR_048552, intron 11 of 19) intron (NR_048552, intron 11 of 19) 38638 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 484-43 chr11 112551389 112551774 + 2 NA intron (NR_104155, intron 2 of 3) intron (NR_104155, intron 2 of 3) 4221 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 585-69 chr2 51438468 51438934 + 2 NA intron (NR_135237, intron 4 of 10) (AT)n|Simple_repeat|Simple_repeat 406100 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 330-121 chr12 38391875 38392140 + 2 NA Intergenic Intergenic 75233 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 242-26 chr1 224343076 224343226 + 2 NA Intergenic L1MB2|LINE|L1 -12962 NM_001243146 4931 Hs.497867 NM_002533 ENSG00000143748 NVL NVL2 nuclear VCP like protein-coding 193-9 chr1 88888616 88888723 + 2 NA intron (NM_001514, intron 1 of 6) intron (NM_001514, intron 1 of 6) 2898 NM_001514 2959 Hs.481852 NM_001514 ENSG00000137947 GTF2B TF2B|TFIIB general transcription factor IIB protein-coding 385-309 chr5 135807289 135807627 + 2 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) -4383 NR_049867 100847082 NR_049867 ENSG00000265924 MIR5692C1 - microRNA 5692c-1 ncRNA 402-311 chr7 11399000 11399223 + 2 NA intron (NM_015204, intron 22 of 26) LTR22B|LTR|ERVK 425239 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 283-126 chr14 42734781 42734950 + 2 NA Intergenic Intergenic 1128009 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 224-267 chr5 166826209 166826361 + 2 NA Intergenic Intergenic 100085 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 264-248 chr20 60689923 60690158 + 2 NA Intergenic L1M5|LINE|L1 125478 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 359-18 chr1 96495231 96495546 + 2 NA Intergenic Intergenic -121263 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 142-30 chr16 63994531 63994627 + 2 NA Intergenic L2b|LINE|L2 1127484 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 382-388 chr7 108758881 108759199 + 2 NA Intergenic L1PA13|LINE|L1 125547 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 253-259 chr3 70637624 70637819 + 2 NA Intergenic L1MA9|LINE|L1 -325083 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 338-324 chr3 16725645 16725912 + 2 NA Intergenic L1M4|LINE|L1 -120355 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 450-9 chr1 114233820 114234180 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -80131 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 536-169 chr4 28537415 28537833 + 2 NA Intergenic Intergenic -281958 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 557-75 chr18 10105836 10106252 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 192028 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 257-199 chr2 98128771 98128991 + 2 NA intron (NR_144297, intron 6 of 18) MER74A|LTR|ERVL -20652 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 344-424 chr6 82678424 82678630 + 2 NA Intergenic Intergenic 314283 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 358-93 chr12 30594709 30594956 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 82412 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 252-350 chr5 136793228 136793409 + 2 NA Intergenic Intergenic -334879 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 336-439 chr4 177448776 177448986 + 2 NA Intergenic L1PB4|LINE|L1 -6378 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 183-2 chr1 103092052 103092149 + 2 NA intron (NM_001854, intron 1 of 66) intron (NM_001854, intron 1 of 66) 16396 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 124-65 chr5 153002342 153002428 + 2 NA Intergenic Intergenic -30036 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 210-200 chr4 76122244 76122407 + 2 NA intron (NR_103781, intron 7 of 9) L1ME1|LINE|L1 26072 NM_017426 53371 Hs.430435 NM_017426 ENSG00000138750 NUP54 - nucleoporin 54 protein-coding 370-70 chr10 116574921 116575116 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -15941 NM_006229 5407 Hs.73923 NM_006229 ENSG00000187021 PNLIPRP1 PLRP1 pancreatic lipase related protein 1 protein-coding 515-111 chr2 52583428 52583893 + 2 NA Intergenic Intergenic 118955 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 242-421 chr8 145048816 145049014 + 2 NA Intergenic Intergenic -3552 NM_023080 65265 Hs.169615 NM_023080 ENSG00000182307 C8orf33 - chromosome 8 open reading frame 33 protein-coding 323-397 chr5 18440136 18440338 + 2 NA Intergenic L1M3|LINE|L1 632963 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 431-30 chr1 240253132 240253554 + 2 NA intron (NM_020066, intron 6 of 17) L1MA4A|LINE|L1 161460 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 550-130 chr20 7823533 7823935 + 2 NA Intergenic L1MA2|LINE|L1 116724 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 263-185 chr2 8066375 8066622 + 2 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) -89684 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 234-285 chr4 125556299 125556473 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 49127 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 317-264 chr2 215247823 215248053 + 2 NA Intergenic L1M5|LINE|L1 -64121 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 138-25 chr15 57216976 57217051 + 2 NA intron (NM_207038, intron 8 of 19) intron (NM_207038, intron 8 of 19) -2417 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 342-292 chr20 55967519 55967818 + 2 NA Intergenic L1MC5|LINE|L1 37851 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 329-224 chr17 79121902 79122083 + 2 NA intron (NM_001350453, intron 3 of 13) L2b|LINE|L2 47055 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 282-180 chr18 61690850 61691085 + 2 NA Intergenic Intergenic -57209 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 241-25 chr1 213768264 213768455 + 2 NA Intergenic Intergenic -156390 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 218-4 chr1 45421202 45421368 + 2 NA intron (NM_007170, intron 3 of 10) intron (NM_007170, intron 3 of 10) 69878 NM_001320800 10420 Hs.591499 NM_007170 ENSG00000070759 TESK2 - testis associated actin remodelling kinase 2 protein-coding 343-537 chr8 77034400 77034631 + 2 NA Intergenic MIR|SINE|MIR -33471 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 308-100 chr12 14580916 14581171 + 2 NA intron (NR_120465, intron 2 of 5) intron (NR_120465, intron 2 of 5) -13160 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 350-183 chr17 68406509 68406766 + 2 NA intron (NM_001352910, intron 11 of 12) L1PB1|LINE|L1 -6986 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 237-352 chr7 40763319 40763476 + 2 NA intron (NM_024728, intron 14 of 14) MIRb|SINE|MIR 216542 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 278-150 chr16 80924528 80924724 + 2 NA Intergenic Intergenic -32030 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 147 chr1 42547953 42548078 + 2 NA intron (NM_001355227, intron 9 of 18) L2c|LINE|L2 14995 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 303-63 chr11 30620884 30621109 + 2 NA Intergenic L2b|LINE|L2 -34643 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 329-252 chr2 53331 53577 + 2 NA Intergenic Intergenic -6949 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 495-265 chr8 137700951 137701357 + 2 NA Intergenic L1ME4b|LINE|L1 -287566 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 243-72 chr11 79607518 79607700 + 2 NA Intergenic L1M3|LINE|L1 -166579 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 246-28 chr1 239289849 239290020 + 2 NA Intergenic Intergenic -96634 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 558-238 chrX 88198237 88198772 + 2 NA Intergenic L1PB3|LINE|L1 -548721 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 283-202 chr18 69433732 69433900 + 2 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) 32928 NM_152721 220164 Hs.278285 NM_152721 ENSG00000206052 DOK6 DOK5L|HsT3226 docking protein 6 protein-coding 482-34 chr10 73537242 73537612 + 2 NA intron (NR_146997, intron 10 of 21) intron (NR_146997, intron 10 of 21) 15913 NR_135250 159195 Hs.657355 NM_152586 ENSG00000166348 USP54 C10orf29|bA137L10.3|bA137L10.4 ubiquitin specific peptidase 54 protein-coding 229-240 chr22 24082440 24082612 + 2 NA intron (NM_012295, intron 19 of 36) L1ME3Cz|LINE|L1 71156 NM_001199281 23523 Hs.517478 NM_012295 ENSG00000099991 CABIN1 CAIN|KB-318B8.7|PPP3IN calcineurin binding protein 1 protein-coding 260-119 chr13 60939528 60939746 + 2 NA Intergenic Intergenic 260243 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 196-208 chr5 96222650 96222813 + 2 NA intron (NR_130776, intron 1 of 4) L1MA4A|LINE|L1 143593 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 121-15 chr16 90051854 90051962 + 2 NA Intergenic Intergenic -4125 NR_027336 100130015 Hs.431792 NR_027335 ENSG00000222019 URAHP URAH urate (hydroxyiso-) hydrolase, pseudogene pseudo 245-303 chr6 63026661 63026857 + 2 NA Intergenic Intergenic 293218 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 294-401 chr6 38732581 38732844 + 2 NA intron (NM_001206927, intron 4 of 92) intron (NM_001206927, intron 4 of 92) 17401 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 484-198 chr4 147065471 147065826 + 2 NA Intergenic Intergenic -119762 NM_031956 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 116-15 chr17 72262745 72262808 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -80035 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 355-129 chr12 39789112 39789375 + 2 NA intron (NR_135051, intron 17 of 18) L1ME3D|LINE|L1 163060 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 204-165 chr20 6327405 6327587 + 2 NA Intergenic L1PB|LINE|L1 -99236 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 124-48 chr3 85502586 85502680 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) -2426 NM_001256502 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 491-193 chr4 148701201 148701602 + 2 NA Intergenic L1M2|LINE|L1 240977 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 381-127 chr16 76557986 76558196 + 2 NA intron (NR_136210, intron 24 of 24) intron (NR_136210, intron 24 of 24) -76907 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 359-505 chr9 26765032 26765361 + 2 NA Intergenic L1ME1|LINE|L1 127606 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 323-505 chr7 82475802 82476049 + 2 NA Intergenic Intergenic -31969 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 453-41 chr11 93998992 93999269 + 2 NA Intergenic Intergenic -22224 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 974-15 chr4 102161356 102161979 + 2 NA Intergenic Intergenic 162645 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 196-149 chr20 12008586 12008723 + 2 NA Intergenic L1MEi|LINE|L1 90761 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 1025-21 chr8 141830875 141831555 + 2 NA Intergenic L1ME2|LINE|L1 -44902 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 359-413 chr5 173102795 173103084 + 2 NA intron (NM_153607, intron 4 of 8) intron (NM_153607, intron 4 of 8) -41592 NM_013979 662 Hs.145726 NM_001205 ENSG00000113734 BNIP1 NIP1|SEC20|TRG-8 BCL2 interacting protein 1 protein-coding 337-171 chr15 53124121 53124389 + 2 NA intron (NR_147181, intron 2 of 2) L3b|LINE|CR1 7890 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 291-264 chr20 52952612 52952774 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -19665 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 199-63 chr14_GL000225v1_random 11476 11600 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 465-323 chrX 85946038 85946368 + 2 NA intron (NM_001320959, intron 8 of 14) MSTA-int|LTR|ERVL-MaLR -42496 NR_029848 494323 NR_029848 ENSG00000199051 MIR361 MIRN361|hsa-mir-361|mir-361 microRNA 361 ncRNA 306-425 chr6 37224853 37225076 + 2 NA intron (NM_145316, intron 1 of 3) AluSz6|SINE|Alu 32635 NM_145316 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 212-147 chr2 41689126 41689300 + 2 NA Intergenic Intergenic -188342 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 571-184 chr9 4098197 4098573 + 2 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 53798 NM_152629 169792 Hs.162125 NM_152629 ENSG00000107249 GLIS3 NDH|ZNF515 GLIS family zinc finger 3 protein-coding 331-278 chr2 114649999 114650261 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 183418 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 304-397 chr4 172691728 172691911 + 2 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) -2902 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 435-224 chr6 168467493 168467767 + 2 NA intron (NM_001166412, intron 1 of 12) AluJo|SINE|Alu 26446 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 277-14 chr1 94401441 94401624 + 2 NA Intergenic Intergenic -16845 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 217-4 chr1 39910327 39910483 + 2 NA Intergenic HAL1|LINE|L1 -8488 NM_005376 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 MYCL proto-oncogene, bHLH transcription factor protein-coding 766-62 chr7 4483027 4483697 + 2 NA Intergenic X7D_LINE|LINE|CR1 -198933 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 320-85 chr11 55047622 55047831 + 2 NA Intergenic ALR/Alpha|Satellite|centr -214429 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 206-256 chr7 82958030 82958233 + 2 NA intron (NM_033026, intron 4 of 24) LTR86A2|LTR|ERVL 204753 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 273-297 chr3 89435225 89435436 + 2 NA intron (NM_005233, intron 13 of 16) AluJo|SINE|Alu 327709 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 353-427 chr5 147314626 147314866 + 2 NA intron (NM_001112724, intron 4 of 12) AluJo|SINE|Alu 79720 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 432-273 chr7 62921096 62921414 + 2 NA Intergenic ALR/Alpha|Satellite|centr 382801 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 213-149 chr2 152273121 152273310 + 2 NA Intergenic MLT2B3|LTR|ERVL -61959 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 212-108 chr15 82131094 82131254 + 2 NA intron (NM_001040610, intron 17 of 17) intron (NM_001040610, intron 17 of 17) 42580 NR_120367 101929690 Hs.176109 NR_120367 ENSG00000259518 LINC01583 - long intergenic non-protein coding RNA 1583 ncRNA 143-50 chr20 23598993 23599122 + 2 NA Intergenic MER57A-int|LTR|ERV1 6916 NM_001008693 128822 Hs.698020 NM_001008693 ENSG00000173335 CST9 CLM|CTES7A cystatin 9 protein-coding 394-109 chr14 78227648 78227877 + 2 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 57389 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 390-69 chr12 30184807 30185032 + 2 NA Intergenic Intergenic -400160 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 291-380 chr6 62087174 62087355 + 2 NA intron (NR_146874, intron 2 of 13) HAL1M8|LINE|L1 198961 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 290-9 chr1 68908020 68908170 + 2 NA Intergenic Intergenic -147803 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 553-78 chr16 51275597 51276074 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -124563 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 301-205 chr2 69021264 69021435 + 2 NA intron (NM_032208, intron 1 of 17) MLT1I|LTR|ERVL-MaLR 8205 NM_018153 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 648-7 chr1 173576670 173577231 + 2 NA intron (NM_178527, intron 7 of 27) MER58B|DNA|hAT-Charlie 26122 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 319-187 chr17 51881558 51881871 + 2 NA intron (NM_001082533, intron 4 of 9) L1ME3G|LINE|L1 277000 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 247-396 chr8 41457488 41457704 + 2 NA Intergenic Intergenic 30941 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 222-277 chr4 157263536 157263744 + 2 NA intron (NM_001083620, intron 2 of 15) intron (NM_001083620, intron 2 of 15) 42912 NM_000826 2891 Hs.32763 NM_000826 ENSG00000120251 GRIA2 GLUR2|GLURB|GluA2|GluR-K2|HBGR2 glutamate ionotropic receptor AMPA type subunit 2 protein-coding 621-133 chr8 118972026 118972499 + 2 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 19999 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 284-436 chr9 28741905 28742057 + 2 NA intron (NM_001354574, intron 2 of 5) L1M3e|LINE|L1 -22676 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 441-27 chr10 66152419 66152765 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 581167 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 468-176 chr20 52707774 52708108 + 2 NA Intergenic Intergenic 87103 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 404-289 chr7 33682338 33682632 + 2 NA Intergenic Intergenic -222430 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 701-93 chr8 74011962 74012462 + 2 NA intron (NM_001195797, intron 2 of 3) L1PB4|LINE|L1 20820 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 346-319 chr3 83611938 83612114 + 2 NA Intergenic Intergenic 1257549 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 259-89 chr12 42819512 42819763 + 2 NA Intergenic Intergenic 127421 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 378-185 chr18 3553281 3553511 + 2 NA intron (NM_001242762, intron 6 of 9) intron (NM_001242762, intron 6 of 9) -40718 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 383-346 chr6 167087147 167087481 + 2 NA Intergenic AluSq2|SINE|Alu -24493 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 262-231 chr2 165920803 165920995 + 2 NA intron (NM_024753, intron 12 of 28) intron (NM_024753, intron 12 of 28) -12958 NR_038984 100506134 Hs.672319 NR_038983 TTC21B-AS1 - TTC21B antisense RNA 1 ncRNA 397-322 chr8 5166319 5166575 + 2 NA Intergenic MER4CL34|LTR|ERV1 -171533 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 471-140 chr2 155475929 155476315 + 2 NA Intergenic Intergenic 777427 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 272-281 chr3 144943619 144943802 + 2 NA Intergenic L1MC3|LINE|L1 970629 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 286-13 chr1 71180112 71180341 + 2 NA intron (NR_046217, intron 2 of 3) MER34D|LTR|ERV1 98902 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 116-47 chr8 70415855 70415923 + 2 NA Intergenic Intergenic -11672 NM_001321703 10499 Hs.446678 NM_006540 ENSG00000140396 NCOA2 GRIP1|KAT13C|NCoA-2|SRC2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 739-63 chr7 9530251 9530969 + 2 NA Intergenic Intergenic -103660 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 528-136 chr2 176769671 176770122 + 2 NA Intergenic Intergenic 132142 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 139-18 chr11 116003912 116003995 + 2 NA Intergenic L1ME3Cz|LINE|L1 -243753 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 327-195 chr17 53709125 53709382 + 2 NA Intergenic Intergenic -113674 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 242-393 chr8 79396737 79396903 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 64632 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 530-64 chr13 99925598 99925969 + 2 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) 31382 NR_120421 101927437 Hs.619936 NR_120421 LOC101927437 - uncharacterized LOC101927437 ncRNA 303-268 chr21 44692787 44693055 + 2 NA intron (NM_001272037, intron 1 of 12) L1M4|LINE|L1 -4251 NM_198699 386685 Hs.297526 NM_198699 ENSG00000189169 KRTAP10-12 KAP10.12|KRTAP18-12|KRTAP18.12 keratin associated protein 10-12 protein-coding 546-25 chr10 93797057 93797462 + 2 NA exon (NM_001308276, exon 6 of 6) exon (NM_001308276, exon 6 of 6) 39323 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 310-92 chr11 115587517 115587790 + 2 NA Intergenic MER61E|LTR|ERV1 -83238 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 347-176 chr17 69952661 69952950 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -8902 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 290-443 chr8 62116592 62116764 + 2 NA Intergenic L1M1|LINE|L1 -132176 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 258-190 chr2 80567499 80567729 + 2 NA intron (NM_001282599, intron 6 of 11) intron (NM_001282599, intron 6 of 11) 254235 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 311-504 chr8 83718937 83719171 + 2 NA Intergenic Intergenic 315296 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 322-95 chr11 91653234 91653493 + 2 NA Intergenic L1M1|LINE|L1 -571671 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 342-568 chrX 52126155 52126478 + 2 NA Intergenic L1PA15|LINE|L1 -57044 NM_001242362 81557 Hs.522650 NM_030801 ENSG00000187243 MAGED4B - MAGE family member D4B protein-coding 228-186 chr2 210702956 210703123 + 2 NA Intergenic L2|LINE|L2 85468 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 306-255 chr2 149815190 149815379 + 2 NA intron (NR_145421, intron 2 of 4) intron (NR_145421, intron 2 of 4) 43907 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 186-142 chr6 84863466 84863609 + 2 NA Intergenic Intergenic -98939 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 262-327 chr4 115497150 115497337 + 2 NA Intergenic L1ME1|LINE|L1 -383623 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 241-375 chr7 68924066 68924284 + 2 NA Intergenic Intergenic 673449 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 471-37 chr10 110355906 110356372 + 2 NA Intergenic Arthur1C|DNA|hAT-Tip100 -51219 NM_005871 10285 Hs.632093 NM_005871 ENSG00000119953 SMNDC1 SMNR|SPF30|TDRD16C survival motor neuron domain containing 1 protein-coding 359-313 chr3 36721162 36721445 + 2 NA intron (NM_033403, intron 3 of 4) (AC)n|Simple_repeat|Simple_repeat 18558 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 459-171 chr22 27661276 27661684 + 2 NA Intergenic L1MB7|LINE|L1 140276 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 360-353 chr5 26707837 26708041 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 330647 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 262-416 chr8 20988971 20989197 + 2 NA intron (NR_033894, intron 3 of 4) L1MD1|LINE|L1 15098 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 390-309 chr5 151359577 151359808 + 2 NA Intergenic L1MB8|LINE|L1 -12133 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 316-537 chr8 32291130 32291369 + 2 NA intron (NM_013962, intron 1 of 4) MLT2B4|LTR|ERVL -149497 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 160-4 chr1 65943077 65943195 + 2 NA intron (NM_002600, intron 3 of 16) L1MA8|LINE|L1 29891 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 321-19 chr1 112138826 112139031 + 2 NA Intergenic Intergenic 148392 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 495-16 chr1 209756189 209756611 + 2 NA intron (NM_001320144, intron 1 of 16) intron (NM_001320144, intron 1 of 16) 347 NM_001320144 80342 Hs.147434 NM_025228 ENSG00000009790 TRAF3IP3 T3JAM TRAF3 interacting protein 3 protein-coding 232-74 chr12 25288297 25288494 + 2 NA Intergenic L2c|LINE|L2 -37466 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 346-248 chr2 102207076 102207335 + 2 NA intron (NM_001351448, intron 3 of 8) L1M1|LINE|L1 19891 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 666-69 chr20 40836796 40837238 + 2 NA Intergenic Intergenic -122394 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 517-4 chr1 57115597 57116098 + 2 NA intron (NM_001365793, intron 4 of 14) intron (NM_001365793, intron 4 of 14) -149707 NM_001278543 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 158-19 chr11 38937680 38937794 + 2 NA Intergenic Intergenic 288879 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 490-31 chr1 223610803 223611128 + 2 NA intron (NM_001143962, intron 11 of 20) MER5A|DNA|hAT-Charlie 54736 NM_001143962 388743 Hs.291487 NM_001143962 ENSG00000203697 CAPN8 nCL-2 calpain 8 protein-coding 376-269 chr4 35346681 35347011 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 897093 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 277-144 chr16 77340988 77341229 + 2 NA intron (NM_199355, intron 11 of 22) intron (NM_199355, intron 11 of 22) 93926 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 243-248 chr2 213522833 213523019 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -235141 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 423-248 chr6 138158101 138158355 + 2 NA Intergenic MER112|DNA|hAT-Charlie -3711 NM_020340 57221 Hs.194408 NM_020340 ENSG00000112379 ARFGEF3 A7322|BIG3|C6orf92|KIAA1244|PPP1R33|dJ171N11.1 ARFGEF family member 3 protein-coding 273-284 chr3 15751902 15752158 + 2 NA intron (NM_001349279, intron 4 of 28) intron (NM_001349279, intron 4 of 28) 4517 NM_001195099 23243 Hs.335239 NM_015199 ENSG00000206560 ANKRD28 PITK|PPP1R65 ankyrin repeat domain 28 protein-coding 362-13 chr1 77430695 77430915 + 2 NA intron (NM_012093, intron 8 of 13) L2a|LINE|L2 147718 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 423-110 chr18 35534739 35535142 + 2 NA Intergenic FLAM_C|SINE|Alu -36980 NM_194281 125476 Hs.464903 NM_194281 ENSG00000153391 INO80C C18orf37|IES6|hIes6 INO80 complex subunit C protein-coding 484-99 chr18 3372328 3372720 + 2 NA Intergenic Intergenic -21965 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 169-9 chr10 9162515 9162661 + 2 NA Intergenic Intergenic -113025 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 220-389 chr9 17557643 17557827 + 2 NA Intergenic Intergenic -21331 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 558-204 chr7 144563828 144564233 + 2 NA intron (NM_001042482, intron 6 of 7) HERV16-int|LTR|ERVL -153803 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 225-332 chr7 54847020 54847157 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 87775 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 197-75 chr17 62368070 62368179 + 2 NA Intergenic L2a|LINE|L2 -2094 NM_001144933 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 263-314 chr5 17892587 17892838 + 2 NA intron (NR_134286, intron 5 of 7) intron (NR_134286, intron 5 of 7) 85438 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 386-369 chr8 142640423 142640685 + 2 NA TTS (NR_134305) TTS (NR_134305) 1958 NR_134305 101928087 Hs.126101 NR_134305 ENSG00000277332 LOC101928087 - uncharacterized LOC101928087 ncRNA 366-397 chr7 3852079 3852306 + 2 NA intron (NM_152744, intron 5 of 44) intron (NM_152744, intron 5 of 44) -277493 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 418-222 chr5 95626913 95627234 + 2 NA Intergenic Intergenic 6986 NM_199243 285601 Hs.143315 NM_199243 ENSG00000178015 GPR150 PGR11 G protein-coupled receptor 150 protein-coding 133-4 chr1 109581457 109581568 + 2 NA intron (NM_006496, intron 4 of 8) intron (NM_006496, intron 4 of 8) -17381 NR_029583 406974 NR_029583 ENSG00000284443 MIR197 MIRN197|miR-197|miRNA197 microRNA 197 ncRNA 301-442 chr8 56061633 56061830 + 2 NA Intergenic L1MB2|LINE|L1 12170 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 373-301 chr4 164718080 164718283 + 2 NA Intergenic Intergenic -35950 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 361-475 chr9 35632258 35632545 + 2 NA Intergenic AluYm1|SINE|Alu -13869 NR_135130 101926948 Hs.639412 NR_135130 LOC101926948 - uncharacterized LOC101926948 ncRNA 128-35 chr2 211791192 211791279 + 2 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 635125 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 402-142 chr2 46675056 46675383 + 2 NA Intergenic L1M4c|LINE|L1 -23741 NM_014011 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 284-15 chr1 110334206 110334422 + 2 NA intron (NR_036595, intron 1 of 3) intron (NR_036595, intron 1 of 3) 4857 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 396-57 chr10 83007627 83007948 + 2 NA Intergenic Intergenic 669302 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 358-205 chr2 63206333 63206654 + 2 NA intron (NR_148705, intron 13 of 16) AluJb|SINE|Alu -86951 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 291-45 chr10 42996074 42996359 + 2 NA Intergenic L1MEd|LINE|L1 -1347 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 395-140 chr18 2161912 2162116 + 2 NA Intergenic Intergenic 409491 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 399-61 chr11 79147628 79147887 + 2 NA intron (NM_001098816, intron 4 of 33) MIRb|SINE|MIR 254352 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 573-108 chr21 28128954 28129350 + 2 NA intron (NR_126012, intron 5 of 5) AluSp|SINE|Alu 38749 NR_126011 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 330-39 chr1 194495312 194495519 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1190670 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 323-600 chrX 125750465 125750728 + 2 NA Intergenic L1MB5|LINE|L1 -359166 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 482-72 chr13 99824891 99825289 + 2 NA intron (NR_120421, intron 1 of 4) intron (NR_120421, intron 1 of 4) -96089 NR_046525 101927465 Hs.130690 NR_046525 CLYBL-AS1 - CLYBL antisense RNA 1 ncRNA 285-2 chr1 33862440 33862658 + 2 NA intron (NM_145205, intron 1 of 1) intron (NM_145205, intron 1 of 1) -1530 NM_001352984 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 360-263 chr20 42294238 42294526 + 2 NA intron (NM_133170, intron 12 of 31) L1MC4|LINE|L1 -391101 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 301-313 chr4 59494568 59494782 + 2 NA Intergenic L1PB|LINE|L1 481102 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 502-110 chr17 35226796 35227160 + 2 NA Intergenic AluSx1|SINE|Alu -16094 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 333-263 chr2 121837240 121837510 + 2 NA Intergenic Intergenic 81724 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 364-167 chr17 41206974 41207200 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 17200 NM_001190460 728318 Hs.727478 NM_001190460 ENSG00000240542 KRTAP9-1 KAP9.1|KRTAP9L3 keratin associated protein 9-1 protein-coding 458-261 chr8 109059642 109059960 + 2 NA Intergenic AluSq|SINE|Alu -26827 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 274-273 chr3 180818620 180818797 + 2 NA intron (NR_109986, intron 2 of 13) L1MC5|LINE|L1 51470 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 343-529 chr8 30145305 30145537 + 2 NA promoter-TSS (NM_001100916) promoter-TSS (NM_001100916) -756 NM_001100916 619373 Hs.627194 NM_001100916 ENSG00000177669 MBOAT4 FKSG89|GOAT|OACT4 membrane bound O-acyltransferase domain containing 4 protein-coding 350-349 chr4 63569420 63569625 + 2 NA Intergenic HERVL-int|LTR|ERVL 839928 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 252-144 chr16 51246151 51246291 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -94949 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 275-35 chr10 23498648 23498875 + 2 NA Intergenic Intergenic 59492 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 322-399 chr4 179644591 179644790 + 2 NA Intergenic Intergenic 1514459 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 152-63 chr3 109131532 109131641 + 2 NA Intergenic Intergenic -5133 NM_001351622 401081 Hs.280892 NM_001351622 ENSG00000241224 C3orf85 - chromosome 3 open reading frame 85 protein-coding 284-337 chr5 158041977 158042144 + 2 NA Intergenic Intergenic -182915 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 251-152 chr2 4897863 4898052 + 2 NA Intergenic L1PB3|LINE|L1 -241735 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 637-69 chr2 213539026 213539471 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -218819 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 481-125 chr18 70271174 70271546 + 2 NA Intergenic LTR8|LTR|ERV1 -17685 NM_004232 9306 Hs.44439 NM_004232 ENSG00000170677 SOCS6 CIS-4|CIS4|HSPC060|SOCS-4|SOCS-6|SOCS4|SSI4|STAI4|STATI4 suppressor of cytokine signaling 6 protein-coding 405-77 chr13 58399412 58399787 + 2 NA Intergenic Intergenic -166482 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 244-357 chr8 31695888 31696099 + 2 NA intron (NM_013962, intron 1 of 4) MIRb|SINE|MIR 56241 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 159-81 chr6 94590865 94590998 + 2 NA Intergenic Intergenic 872628 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 299-109 chr12 88265875 88266165 + 2 NA Intergenic Intergenic 123713 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 248-18 chr1 168496098 168496249 + 2 NA promoter-TSS (NR_125956) promoter-TSS (NR_125956) -529 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 239-177 chr2 90191857 90192031 + 2 NA Intergenic Intergenic -554037 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 210-222 chr5 37960782 37960951 + 2 NA Intergenic L1MB2|LINE|L1 12375 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 300-213 chr2 140466893 140467095 + 2 NA intron (NM_018557, intron 60 of 90) intron (NM_018557, intron 60 of 90) 119691 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 575-87 chr2 101646254 101646815 + 2 NA Intergenic Intergenic -51169 NM_145686 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 235-108 chr15 24610152 24610323 + 2 NA Intergenic LTR62|LTR|ERVL 52080 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 370-274 chr20 56938272 56938568 + 2 NA Intergenic Intergenic -275276 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 254-87 chr12 88909471 88909633 + 2 NA Intergenic L1MA4A|LINE|L1 110140 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 382-376 chr7 29979871 29980069 + 2 NA intron (NM_001145514, intron 1 of 7) intron (NM_001145514, intron 1 of 7) 9831 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 363-59 chr10 85419855 85420153 + 2 NA Intergenic Intergenic 12768 NR_120669 101929646 Hs.116129 NR_120669 LINC02647 - long intergenic non-protein coding RNA 2647 ncRNA 247-114 chr14 59247901 59248067 + 2 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) -15457 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 271-271 chr3 85984590 85984791 + 2 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -156640 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 307-32 chr1 217967290 217967494 + 2 NA Intergenic L1PA15|LINE|L1 74492 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 469-36 chr10 69551164 69551518 + 2 NA Intergenic Intergenic 22081 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 328-478 chr5 152786679 152786914 + 2 NA intron (NR_109877, intron 3 of 4) L1MA3|LINE|L1 185553 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 528-228 chr6 137587916 137588283 + 2 NA Intergenic Intergenic -77547 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 307-77 chr11 15807828 15808107 + 2 NA Intergenic Intergenic 161654 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 314-325 chr2 228935139 228935410 + 2 NA Intergenic Intergenic 296818 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 475-188 chr3 131692074 131692508 + 2 NA intron (NM_130808, intron 5 of 15) MIRb|SINE|MIR -189320 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 250-153 chr16 88290735 88290965 + 2 NA Intergenic Intergenic 96569 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LINC02182 LA16c-444G7.2 long intergenic non-protein coding RNA 2182 ncRNA 281-31 chr1 248177612 248177772 + 2 NA Intergenic Intergenic -2294 NM_001004688 391194 Hs.534728 NM_001004688 ENSG00000198601 OR2M2 OR2M2Q|OST423 olfactory receptor family 2 subfamily M member 2 protein-coding 321-71 chr10 86456723 86456974 + 2 NA intron (NM_001318328, intron 12 of 18) intron (NM_001318328, intron 12 of 18) 64936 NM_001318328 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 263-193 chr2 35310188 35310356 + 2 NA Intergenic Intergenic -161133 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 507-178 chr4 10658667 10659011 + 2 NA intron (NM_052964, intron 2 of 18) MLT1G1|LTR|ERVL-MaLR 25929 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 272-38 chr10 19711388 19711556 + 2 NA intron (NR_120646, intron 4 of 4) L2a|LINE|L2 17078 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 359-265 chr2 210934440 210934725 + 2 NA Intergenic HAL1b|LINE|L1 317011 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 420-64 chr12 34506069 34506313 + 2 NA Intergenic ALR/Alpha|Satellite|centr 483695 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 236-344 chr8 36134984 36135165 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -424754 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 272-479 chr9 101725742 101725960 + 2 NA intron (NM_133445, intron 1 of 8) L2a|LINE|L2 12729 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 202-133 chr2 205241452 205241626 + 2 NA intron (NM_205863, intron 15 of 21) intron (NM_205863, intron 15 of 21) -440961 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 342-180 chr16 62440867 62441177 + 2 NA Intergenic L1MA5A|LINE|L1 -404584 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 183-19 chr11 11173923 11174086 + 2 NA Intergenic MLT2F|LTR|ERVL 179246 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 355-75 chr10 126726723 126726975 + 2 NA Intergenic L1ME3A|LINE|L1 -56339 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 194-178 chr6 27457314 27457449 + 2 NA non-coding (NR_144687, exon 4 of 9) non-coding (NR_144687, exon 4 of 9) 15517 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 262-103 chr12 94178713 94178921 + 2 NA intron (NM_005761, intron 2 of 30) MER3|DNA|hAT-Charlie 30240 NM_005761 10154 Hs.584845 NM_005761 ENSG00000136040 PLXNC1 CD232|PLXN-C1|VESPR plexin C1 protein-coding 338-312 chr22 25512977 25513275 + 2 NA Intergenic Intergenic -51549 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 332-303 chr21 29518592 29518864 + 2 NA Intergenic Intergenic 22681 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 137-8 chr11 23715089 23715180 + 2 NA Intergenic Intergenic -295944 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 348-357 chr4 58620388 58620686 + 2 NA Intergenic MER11C|LTR|ERVK -84209 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 211-303 chr8 102269394 102269593 + 2 NA intron (NM_001282873, intron 50 of 58) intron (NM_001282873, intron 50 of 58) 30042 NR_125415 101927221 Hs.492445 NR_125415 ENSG00000246263 UBR5-AS1 - UBR5 antisense RNA 1 ncRNA 411-274 chr7 70308380 70308782 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 710106 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 285-435 chr8 131122296 131122525 + 2 NA Intergenic Intergenic -81501 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 293-213 chr2 175765976 175766151 + 2 NA Intergenic Intergenic 236204 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 561-144 chr4 60394573 60394908 + 2 NA Intergenic Intergenic -527879 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 281-100 chr13 22101998 22102142 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -108215 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 722-11 chr10 32417706 32418322 + 2 NA Intergenic Intergenic 28042 NR_120660 101929431 Hs.639819 NR_120660 LOC101929431 - uncharacterized LOC101929431 ncRNA 394-11 chr1 85640276 85640636 + 2 NA Intergenic L1M4|LINE|L1 59695 NM_001554 3491 Hs.8867 NM_001554 ENSG00000142871 CCN1 CYR61|GIG1|IGFBP10 cellular communication network factor 1 protein-coding 573-131 chr4 126728221 126728612 + 2 NA Intergenic Intergenic -904541 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 553-111 chr2 52295685 52296105 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -74753 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 375-289 chr4 67860997 67861306 + 2 NA intron (NM_004262, intron 1 of 9) Charlie18a|DNA|hAT-Charlie 22851 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 349-92 chr11 13194871 13195092 + 2 NA Intergenic L1M5|LINE|L1 -81671 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 187-41 chr12 127202180 127202349 + 2 NA Intergenic Intergenic 82019 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 387-290 chr5 100578885 100579204 + 2 NA intron (NM_198507, intron 2 of 2) intron (NM_198507, intron 2 of 2) 43670 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 350-454 chr6 146883242 146883433 + 2 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -79513 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 271-327 chr4 174745496 174745750 + 2 NA intron (NM_006529, intron 3 of 9) L1MA4A|LINE|L1 83624 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 246-70 chr11 72880285 72880508 + 2 NA intron (NM_014824, intron 12 of 19) L1MA4A|LINE|L1 65985 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 198-78 chr16 13343659 13343821 + 2 NA Intergenic Intergenic 442142 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 403-54 chr11 79346221 79346550 + 2 NA intron (NM_001098816, intron 1 of 33) MIRb|SINE|MIR 55724 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 471-231 chr6 77281461 77281769 + 2 NA Intergenic LTR28B|LTR|ERV1 182407 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 327-303 chr20 56984674 56984881 + 2 NA Intergenic MLT1F-int|LTR|ERVL-MaLR -228919 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 246-424 chr8 135490440 135490571 + 2 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 33049 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 361-10 chr1 84342201 84342559 + 2 NA intron (NM_001134663, intron 3 of 3) L1PA10|LINE|L1 39729 NM_001134664 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 312-359 chr4 18603995 18604277 + 2 NA Intergenic Intergenic -582261 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 251-118 chr16 6323506 6323683 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) 303891 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 311-489 chr8 28297892 28298087 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -19279 NM_006228 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 305-57 chr10 32711843 32712062 + 2 NA intron (NM_001321115, intron 26 of 43) MER76-int|LTR|ERVL 189520 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 557-172 chr6 109269367 109269760 + 2 NA intron (NR_152435, intron 22 of 45) intron (NR_152435, intron 22 of 45) 103732 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 229-388 chr8 83804098 83804242 + 2 NA Intergenic Intergenic -378617 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 179-108 chr7 40567710 40567875 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 412147 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 326-429 chr5 133229545 133229740 + 2 NA intron (NM_015082, intron 8 of 15) L1P3|LINE|L1 177629 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 341-157 chr15 25062544 25062786 + 2 NA TTS (NR_003320) TTS (NR_003320) 333 NR_003320 100033417 NR_003320 ENSG00000207191 SNORD116-5 HBII-85-5 small nucleolar RNA, C/D box 116-5 snoRNA 311-76 chr11 4668511 4668788 + 2 NA Intergenic L1MD1|LINE|L1 24667 NM_152430 143503 Hs.470038 NM_152430 ENSG00000180785 OR51E1 D-GPCR|DGPCR|GPR136|GPR164|OR51E1P|OR52A3P|POGR|PSGR2 olfactory receptor family 51 subfamily E member 1 protein-coding 552-180 chr5 153652789 153653265 + 2 NA intron (NM_000827, intron 4 of 15) intron (NM_000827, intron 4 of 15) 160855 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 340-588 chrX 122184488 122184694 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 813619 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 147-63 chr3 188079855 188079991 + 2 NA Intergenic L1MC2|LINE|L1 -73975 NM_001167672 4026 Hs.720220 NM_005578 ENSG00000145012 LPP - LIM domain containing preferred translocation partner in lipoma protein-coding 142-83 chr8 126786069 126786176 + 2 NA Intergenic L1ME3E|LINE|L1 -227032 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 266-41 chr10 64108730 64108874 + 2 NA Intergenic L2b|LINE|L2 -586912 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 275-67 chr11 80184514 80184711 + 2 NA Intergenic L2|LINE|L2 578191 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 178-123 chr6 85273825 85273975 + 2 NA Intergenic L1MB2|LINE|L1 116286 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 334-149 chr14 63828713 63828990 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -24114 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 354-234 chr2 164653017 164653267 + 2 NA Intergenic Intergenic -31660 NM_004490 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 317-221 chr2 41158361 41158560 + 2 NA Intergenic Intergenic -646025 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 498-173 chr3 94931829 94932263 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -6217 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 381-5 chr1 49012166 49012422 + 2 NA intron (NM_001323575, intron 5 of 12) (AGAGAC)n|Simple_repeat|Simple_repeat -235325 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 374-414 chr9 81149247 81149479 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 540172 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 564-182 chr7 8128629 8129173 + 2 NA intron (NM_001350836, intron 13 of 14) MIRb|SINE|MIR 133151 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 305-415 chr4 175857713 175857957 + 2 NA intron (NR_048571, intron 1 of 5) L1MEc|LINE|L1 -44721 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 289-80 chr11 43600638 43600816 + 2 NA Intergenic MIR|SINE|MIR 19333 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 697-5 chr10 11945765 11946308 + 2 NA intron (NM_080599, intron 16 of 21) intron (NM_080599, intron 16 of 21) -51326 NR_038222 219731 Hs.576787 NR_038222 ENSG00000225778 PROSER2-AS1 - PROSER2 antisense RNA 1 ncRNA 317-36 chr1 237798806 237799010 + 2 NA intron (NM_001035, intron 97 of 104) intron (NM_001035, intron 97 of 104) -63267 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 472-25 chr1 227669143 227669472 + 2 NA intron (NR_102302, intron 5 of 5) L1PA16|LINE|L1 28400 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 474-294 chr8 122176354 122176735 + 2 NA Intergenic L1ME2|LINE|L1 392100 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 258-403 chr8 108025812 108026042 + 2 NA intron (NM_178565, intron 2 of 5) L1MC4|LINE|L1 56012 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 321-178 chr14 72381146 72381375 + 2 NA intron (NM_001370288, intron 3 of 16) L1MA5A|LINE|L1 -135560 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 398-327 chr7 57279879 57280177 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -57854 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 206-85 chr15 97634755 97634931 + 2 NA Intergenic L1MEc|LINE|L1 -74145 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 243-113 chr13 90407685 90407832 + 2 NA Intergenic MIR|SINE|MIR -85530 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 198-185 chr4 120132928 120133110 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -66171 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 255-298 chr4 73456505 73456660 + 2 NA TTS (NM_001134) TTS (NM_001134) 20361 NM_001354717 174 Hs.518808 NM_001134 ENSG00000081051 AFP AFPD|FETA|HPAFP alpha fetoprotein protein-coding 501-15 chr1 202805023 202805468 + 2 NA intron (NM_001314042, intron 1 of 27) intron (NM_001314042, intron 1 of 27) 4225 NM_006618 10765 Hs.18891 NM_006618 ENSG00000117139 KDM5B CT31|JARID1B|MRT65|PLU-1|PLU1|PPP1R98|PUT1|RBBP2H1A|RBP2-H1 lysine demethylase 5B protein-coding 387-386 chr9 28234717 28235059 + 2 NA intron (NM_152570, intron 5 of 6) MLT2A2|LTR|ERVL 484417 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 362-438 chr8 85158395 85158712 + 2 NA Intergenic L1PA13|LINE|L1 18488 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 284-310 chr5 13496958 13497187 + 2 NA Intergenic L1MA8|LINE|L1 447408 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 208-183 chr4 38772430 38772584 + 2 NA 3' UTR (NM_030956, exon 4 of 4) 3' UTR (NM_030956, exon 4 of 4) 10483 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 225-299 chr5 165915372 165915532 + 2 NA Intergenic Intergenic 1010918 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 563-169 chr7 16120811 16121361 + 2 NA intron (NM_001101426, intron 9 of 9) MIR|SINE|MIR -89400 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 420-187 chr3 99473368 99473781 + 2 NA Intergenic L1MEg|LINE|L1 -165020 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 244-16 chr1 157209155 157209302 + 2 NA Intergenic MIR|SINE|MIR -70637 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 714-8 chr10 19192483 19193000 + 2 NA intron (NM_001142308, intron 14 of 39) MLT1E2|LTR|ERVL-MaLR 143940 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 328-158 chr14 68920368 68920640 + 2 NA intron (NM_001102, intron 3 of 20) intron (NM_001102, intron 3 of 20) 58798 NM_001102 87 Hs.235750 NM_001102 ENSG00000072110 ACTN1 BDPLT15 actinin alpha 1 protein-coding 317-490 chr8 102143693 102143925 + 2 NA Intergenic L1MEc|LINE|L1 18377 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 215-113 chr17 61443793 61443985 + 2 NA Intergenic Intergenic -8533 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 266-293 chr4 84369654 84369831 + 2 NA Intergenic Intergenic -70573 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 306-292 chr22 26840920 26841161 + 2 NA Intergenic L2b|LINE|L2 -19171 NR_146604 110091768 Hs.639900 NR_146604 LOC110091768 - uncharacterized LOC110091768 ncRNA 370-364 chr5 9949600 9949955 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -45953 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 221-138 chr2 59817022 59817181 + 2 NA Intergenic MIRc|SINE|MIR 565935 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 211-156 chr2 183899612 183899766 + 2 NA Intergenic Intergenic -479286 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 462-245 chr6 2411853 2412157 + 2 NA intron (NR_046229, intron 6 of 6) intron (NR_046229, intron 6 of 6) 166252 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 515-144 chr20 55634375 55634738 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -207359 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 351-357 chr4 133770206 133770533 + 2 NA Intergenic Intergenic 431420 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 412-274 chr6 37179343 37179744 + 2 NA Intergenic AluSz|SINE|Alu 9391 NM_001243186 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 404-152 chr2 16462625 16462871 + 2 NA Intergenic Intergenic 203086 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 468-308 chr8 35397494 35397773 + 2 NA intron (NM_080872, intron 1 of 16) L2b|LINE|L2 -146759 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 263-57 chr10 82722128 82722307 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -489297 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 275-353 chr8 32943893 32944159 + 2 NA Intergenic L1M2|LINE|L1 222191 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 579-165 chr8 76708677 76709073 + 2 NA intron (NM_024721, intron 3 of 10) intron (NM_024721, intron 3 of 10) -25600 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 301-192 chr2 10920701 10920936 + 2 NA Intergenic Intergenic 8884 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 624-25 chr11 107109313 107109755 + 2 NA Intergenic L1PB3|LINE|L1 -91058 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 386-257 chr4 38221900 38222230 + 2 NA Intergenic Intergenic 102111 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 374-279 chr4 64020742 64021062 + 2 NA Intergenic Intergenic 388548 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 202-154 chr3 4260056 4260191 + 2 NA Intergenic Intergenic -43181 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 196-87 chr15 97016752 97016910 + 2 NA Intergenic L1MA6|LINE|L1 233396 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 236-305 chr6 86104953 86105111 + 2 NA Intergenic L1PB4|LINE|L1 -426299 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 331-87 chr11 44052856 44053174 + 2 NA exon (NM_001363113, exon 7 of 14) exon (NM_001363113, exon 7 of 14) 5034 NM_001031854 390110 Hs.558851 NM_001031854 ENSG00000205126 ACCSL - 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like protein-coding 432-292 chr8 138492376 138492659 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 4744 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 255-424 chr8 85316504 85316746 + 2 NA Intergenic Intergenic 25089 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 365-80 chr11 114522482 114522751 + 2 NA intron (NM_152315, intron 5 of 5) intron (NM_152315, intron 5 of 5) 37265 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 261-55 chr11 2240059 2240292 + 2 NA Intergenic L1MC3|LINE|L1 30777 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 385-398 chr9 9281411 9281748 + 2 NA intron (NM_002839, intron 9 of 45) L1MC1|LINE|L1 423561 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 265-294 chr5 8072496 8072685 + 2 NA Intergenic Intergenic 203442 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 140-79 chr8 133896650 133896741 + 2 NA intron (NR_125424, intron 1 of 3) intron (NR_125424, intron 1 of 3) 10199 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 226-296 chr6 22831547 22831718 + 2 NA Intergenic Intergenic -113708 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 322-557 chr8 140793364 140793664 + 2 NA intron (NR_148037, intron 13 of 34) intron (NR_148037, intron 13 of 34) -60861 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 312-239 chr2 76719734 76719947 + 2 NA Intergenic Intergenic -266125 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 316-300 chr2 192908942 192909195 + 2 NA Intergenic Intergenic 159223 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 288-339 chr5 124801086 124801366 + 2 NA Intergenic MER39|LTR|ERV1 -56114 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 199-211 chr6 37657097 37657282 + 2 NA intron (NM_153487, intron 3 of 16) intron (NM_153487, intron 3 of 16) 40694 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 470-164 chr21 32131751 32132081 + 2 NA Intergenic Intergenic -45621 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 274-277 chr4 21024477 21024639 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -40549 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 279-309 chr5 11697149 11697334 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -108175 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 193-13 chr1 101323033 101323188 + 2 NA promoter-TSS (NR_126402) promoter-TSS (NR_126402) -727 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 194-151 chr4 105294383 105294539 + 2 NA intron (NR_126420, intron 2 of 5) L1M4|LINE|L1 58420 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 416-36 chr10 49059818 49060195 + 2 NA intron (NM_001031746, intron 5 of 7) L1ME1|LINE|L1 55516 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 578-167 chr8 5313622 5314066 + 2 NA Intergenic Intergenic -318930 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 330-500 chr7 119086987 119087164 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 820300 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 280-447 chr9 119152656 119152871 + 2 NA Intergenic Intergenic 216672 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 493-169 chr2 173812324 173812663 + 2 NA Intergenic MIRc|SINE|MIR 151387 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 422-19 chr1 227635683 227635932 + 2 NA intron (NR_102302, intron 2 of 5) MER48|LTR|ERV1 61900 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 996-4 chr1 105300636 105301377 + 2 NA Intergenic L1M1|LINE|L1 317929 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 551-130 chr4 32578698 32579095 + 2 NA Intergenic LTR16|LTR|ERVL 227858 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 258-405 chr8 109984866 109985022 + 2 NA Intergenic LTR81B|LTR|Gypsy -9173 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 196-162 chr22 27367953 27368109 + 2 NA Intergenic L1MEd|LINE|L1 57380 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 260-82 chr11 88491671 88491883 + 2 NA Intergenic MIRc|SINE|MIR -12799 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 349-308 chr21 31094928 31095107 + 2 NA Intergenic L1MA4|LINE|L1 -56541 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 243-135 chr14 89645972 89646138 + 2 NA Intergenic Intergenic -26890 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 163-46 chr14 47593401 47593504 + 2 NA intron (NM_001113498, intron 1 of 16) L1PA10|LINE|L1 81502 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 329-256 chr2 7511086 7511320 + 2 NA Intergenic Intergenic 89942 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 352-394 chr4 175755144 175755412 + 2 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 32398 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 300-231 chr20 10125870 10126130 + 2 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) 91013 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 206-167 chr3 89531194 89531356 + 2 NA Intergenic Intergenic 423654 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 293-452 chr8 122762829 122763057 + 2 NA Intergenic L1MD2|LINE|L1 -18712 NM_014943 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 273-317 chr4 38212176 38212359 + 2 NA Intergenic Intergenic 92313 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 259-56 chr10 86292909 86293128 + 2 NA intron (NM_017551, intron 2 of 15) intron (NM_017551, intron 2 of 15) -28230 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 344-246 chr2 104237350 104237557 + 2 NA Intergenic L1ME4b|LINE|L1 170879 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 281-315 chr4 63737018 63737281 + 2 NA Intergenic Intergenic 672301 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 632-53 chr2 80012293 80012636 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -145881 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 442-18 chr1 187731029 187731328 + 2 NA Intergenic L2a|LINE|L2 287550 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 319-359 chr4 35838900 35839177 + 2 NA Intergenic Intergenic 404901 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 402-71 chr13 20078340 20078712 + 2 NA intron (NR_148365, intron 21 of 24) intron (NR_148365, intron 21 of 24) -24175 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 382-248 chr22 26572519 26572736 + 2 NA intron (NM_001362923, intron 1 of 7) L2c|LINE|L2 -7286 NM_001008566 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 160-118 chr8 84691064 84691218 + 2 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -14786 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 242-139 chr17 47863241 47863417 + 2 NA Intergenic L2a|LINE|L2 -7632 NM_199262 80320 Hs.253603 NM_199262 ENSG00000189120 SP6 EPFN|EPIPROFIN|KLF14 Sp6 transcription factor protein-coding 539 chr1 28765770 28766147 + 2 NA intron (NM_001173128, intron 5 of 5) L1MC4|LINE|L1 29018 NM_016258 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 321-42 chr1 240036890 240037185 + 2 NA Intergenic L1MEc|LINE|L1 29513 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 383-53 chr11 74279761 74280138 + 2 NA intron (NR_110031, intron 7 of 11) L3|LINE|CR1 -31413 NR_120556 101928580 Hs.569025 NR_120556 ENSG00000246211 P4HA3-AS1 - P4HA3 antisense RNA 1 ncRNA 587-95 chr21 31272334 31272737 + 2 NA intron (NM_001353688, intron 4 of 29) L1MD2|LINE|L1 71819 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 491-119 chr2 66255109 66255435 + 2 NA Intergenic Intergenic 103056 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 336-149 chr13 64805276 64805539 + 2 NA Intergenic Intergenic -729396 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 295-249 chr2 235177109 235177394 + 2 NA Intergenic Intergenic 149516 NM_001371306 285-302 chr4 43261837 43262013 + 2 NA Intergenic L1MA3|LINE|L1 230618 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 395-187 chr2 179957530 179957824 + 2 NA intron (NM_020943, intron 14 of 19) intron (NM_020943, intron 14 of 19) 49620 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 518-162 chr21 21003476 21003905 + 2 NA intron (NM_001352595, intron 1 of 14) intron (NM_001352595, intron 1 of 14) 5281 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 366-250 chr20 14723835 14724141 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 169604 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 387-298 chr5 146829180 146829548 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 49421 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 353-190 chr17 66869576 66869916 + 2 NA intron (NM_145811, intron 1 of 5) intron (NM_145811, intron 1 of 5) 34629 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 320-568 chr8 121363225 121363427 + 2 NA Intergenic L2a|LINE|L2 -276020 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 333-67 chr10 98755232 98755449 + 2 NA intron (NM_021828, intron 3 of 11) L1PA15|LINE|L1 169228 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 308-249 chr2 167398781 167399028 + 2 NA Intergenic Intergenic 211532 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 140-69 chr7 35738630 35738718 + 2 NA Intergenic L1ME2z|LINE|L1 22237 NR_108083 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 336-364 chr3 60868669 60868988 + 2 NA intron (NM_001320900, intron 4 of 9) intron (NM_001320900, intron 4 of 9) -250958 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 257-225 chr2 204363447 204363649 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -181927 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 338-491 chr7 18442385 18442673 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -53181 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 291-409 chr7 53522739 53523000 + 2 NA Intergenic L1MCb|LINE|L1 289062 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 163-63 chr2 59364784 59364919 + 2 NA Intergenic Intergenic 147143 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 343-75 chr11 39861045 39861363 + 2 NA Intergenic Intergenic 431926 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 707-42 chr18 7989259 7989894 + 2 NA intron (NM_002845, intron 7 of 30) intron (NM_002845, intron 7 of 30) 377458 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 540-41 chr11 86423077 86423544 + 2 NA TTS (NM_021827) TTS (NM_021827) 48423 NM_001156474 60494 Hs.144913 NM_021827 ENSG00000149201 CCDC81 - coiled-coil domain containing 81 protein-coding 340-530 chr8 65845124 65845454 + 2 NA Intergenic L1M4c|LINE|L1 -3225 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 210-70 chr14 27247657 27247789 + 2 NA Intergenic Intergenic 339081 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 390-135 chr16 71235839 71236073 + 2 NA Intergenic L2b|LINE|L2 -5234 NM_001198543 54768 Hs.351914 NM_017558 ENSG00000157423 HYDIN CILD5|HYDIN1|HYDIN2|PPP1R31 HYDIN axonemal central pair apparatus protein protein-coding 475-231 chr5 111559757 111560091 + 2 NA intron (NR_040093, intron 1 of 6) L1PA8|LINE|L1 -47327 NR_131753 134429 Hs.93842 NM_139164 ENSG00000164211 STARD4 - StAR related lipid transfer domain containing 4 protein-coding 309-411 chr4 160529031 160529264 + 2 NA Intergenic L1MEf|LINE|L1 -751363 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 114-55 chr6 127296607 127296693 + 2 NA intron (NM_001002030, intron 5 of 5) L1M2|LINE|L1 29812 NM_001242845 81847 Hs.267120 NM_030963 ENSG00000118518 RNF146 - ring finger protein 146 protein-coding 255-392 chr7 88672017 88672213 + 2 NA Intergenic HAL1|LINE|L1 -87585 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 295-240 chr2 203456141 203456391 + 2 NA intron (NM_001329728, intron 10 of 15) intron (NM_001329728, intron 10 of 15) 79035 NM_001329728 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 443-307 chr9 71588210 71588541 + 2 NA Intergenic Intergenic -141404 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 284-370 chr7 12412203 12412410 + 2 NA Intergenic L1MA9|LINE|L1 -8365 NR_144534 221806 Hs.669526 NM_001135924 ENSG00000146530 VWDE - von Willebrand factor D and EGF domains protein-coding 544-47 chr11 101121302 101121657 + 2 NA intron (NM_000926, intron 2 of 7) intron (NM_000926, intron 2 of 7) 7584 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 345-256 chr2 74829597 74829825 + 2 NA Intergenic Intergenic -2944 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 611-25 chr11 81148792 81149243 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie -386214 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 488-244 chr6 130646029 130646444 + 2 NA Intergenic Intergenic -181169 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 227-4 chr1 38707178 38707332 + 2 NA Intergenic AluSq2|SINE|Alu 152517 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 356-384 chr5 13812960 13813308 + 2 NA intron (NM_001369, intron 43 of 78) intron (NM_001369, intron 43 of 78) 131346 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 372-64 chr11 1402079 1402352 + 2 NA intron (NM_003957, intron 1 of 19) intron (NM_003957, intron 1 of 19) -8255 NM_001282218 9024 Hs.170819 NM_003957 ENSG00000174672 BRSK2 C11orf7|PEN11B|SAD1|SADA|STK29 BR serine/threonine kinase 2 protein-coding 211-164 chr20 39297778 39297936 + 2 NA Intergenic L2c|LINE|L2 -73109 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 314-121 chr12 25822815 25823083 + 2 NA Intergenic Intergenic 51130 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 232-326 chr6 65176485 65176713 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -124819 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 195-49 chr12 19724365 19724508 + 2 NA Intergenic U1|snRNA|snRNA 283837 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 626-78 chr2 215636962 215637410 + 2 NA intron (NR_037195, intron 5 of 9) MLT2B1|LTR|ERVL -80857 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 219-31 chr10 36043901 36044085 + 2 NA Intergenic L1MB8|LINE|L1 265691 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 391-43 chr10 83328422 83328658 + 2 NA Intergenic L1MB7|LINE|L1 348549 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 793-10 chr12 30307825 30308402 + 2 NA Intergenic MER4D0|LTR|ERV1 369131 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 323-446 chr6 6164899 6165146 + 2 NA intron (NM_000129, intron 13 of 14) intron (NM_000129, intron 13 of 14) -4312 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 326-109 chr11 97075422 97075652 + 2 NA Intergenic AluSz|SINE|Alu 567112 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 592-117 chr3 118240143 118240677 + 2 NA Intergenic Intergenic -401358 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 471-153 chr21 17746814 17747142 + 2 NA Intergenic MER34C2|LTR|ERV1 45531 NR_038870 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 217-133 chr15 100699793 100699959 + 2 NA Intergenic L1ME3G|LINE|L1 97287 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 400-56 chr11 73401354 73401679 + 2 NA 3' UTR (NM_001286050, exon 9 of 9) 3' UTR (NM_001286050, exon 9 of 9) 24848 NM_032871 84957 Hs.533720 NM_032871 ENSG00000054967 RELT AI3C|TNFRSF19L|TRLT RELT TNF receptor protein-coding 128-71 chr7 52666622 52666734 + 2 NA Intergenic MLT1F1-int|LTR|ERVL-MaLR -368955 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 322-236 chr2 34735445 34735677 + 2 NA Intergenic Intergenic 58004 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 479-176 chr4 180836807 180837283 + 2 NA Intergenic Intergenic 322104 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 306-513 chr8 104925683 104925964 + 2 NA Intergenic MLT2B4|LTR|ERVL -336799 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 259-129 chr14 104364864 104365101 + 2 NA Intergenic Intergenic 141398 NR_146612 145195 Hs.534297 NR_146611 ENSG00000258913 LINC02691 C14orf144 long intergenic non-protein coding RNA 2691 ncRNA 195-145 chr3 76929831 76929987 + 2 NA Intergenic L2a|LINE|L2 -110190 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 308-517 chr8 128254900 128255111 + 2 NA Intergenic MIRc|SINE|MIR 104889 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 263-79 chr12 12232855 12233108 + 2 NA intron (NM_002336, intron 2 of 22).2 L1MC5a|LINE|L1 34063 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 312-291 chr20 33572644 33572867 + 2 NA intron (NM_001039709, intron 1 of 10) L2c|LINE|L2 10390 NM_001039709 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 212-330 chr8 122415290 122415457 + 2 NA intron (NR_131202, intron 3 of 3) MIRb|SINE|MIR 153271 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 338-15 chr1 96023051 96023243 + 2 NA TTS (NR_125991) TTS (NR_125991) 31079 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 414-281 chr6 6108576 6108816 + 2 NA Intergenic L1MA1|LINE|L1 -60638 NR_049863 100847034 NR_049863 ENSG00000283616 MIR5683 - microRNA 5683 ncRNA 270-345 chr7 1338156 1338356 + 2 NA Intergenic L1MEc|LINE|L1 105384 NM_001080461 340260 NM_001080461 ENSG00000164853 UNCX UNCX4.1 UNC homeobox protein-coding 200-177 chr3 102018854 102019003 + 2 NA Intergenic MER57A1|LTR|ERV1 78069 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 226-199 chr20 20746011 20746179 + 2 NA Intergenic Intergenic -33451 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 341-586 chrX 128027728 128027925 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 24577 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 533-29 chr12 234456 234839 + 2 NA intron (NM_001190997, intron 5 of 12) AluSz|SINE|Alu -20490 NM_001122848 6539 Hs.437174 NM_003044 ENSG00000111181 SLC6A12 BGT-1|BGT1|GAT2 solute carrier family 6 member 12 protein-coding 349-120 chr12 23196860 23197205 + 2 NA Intergenic Intergenic 21396 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 377-372 chr7 53668520 53668854 + 2 NA intron (NR_038371, intron 5 of 5) L1MB4|LINE|L1 143244 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 349-433 chr5 162818930 162819271 + 2 NA Intergenic Intergenic -618471 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 351-172 chr17 51670988 51671334 + 2 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 235734 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 538-221 chr7 48194598 48195065 + 2 NA intron (NM_152701, intron 2 of 61) intron (NM_152701, intron 2 of 61) 23373 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 241-315 chr5 150902322 150902507 + 2 NA TTS (NM_001346557) TTS (NM_001346557) 2569 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 277-26 chr1 187158347 187158518 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 65590 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 486-149 chr2 123748356 123748739 + 2 NA Intergenic Intergenic 276627 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 329-419 chr4 107038485 107038660 + 2 NA Intergenic Intergenic -2259 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 341-257 chr2 102148859 102149055 + 2 NA intron (NM_000877, intron 1 of 11) (AAAC)n|Simple_repeat|Simple_repeat -4984 NM_001320983 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 418-16 chr1 211129079 211129482 + 2 NA intron (NM_002238, intron 1 of 10) intron (NM_002238, intron 1 of 10) 4094 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 180-148 chr6 47237339 47237481 + 2 NA intron (NM_014452, intron 4 of 5) intron (NM_014452, intron 4 of 5) 72495 NM_014452 27242 Hs.443577 NM_014452 ENSG00000146072 TNFRSF21 BM-018|CD358|DR6 TNF receptor superfamily member 21 protein-coding 280-114 chr13 90060938 90061138 + 2 NA intron (NR_047489, intron 5 of 5) intron (NR_047489, intron 5 of 5) 58679 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 342-127 chr13 56850043 56850268 + 2 NA Intergenic Intergenic -290763 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 653-4 chr1 99601210 99601714 + 2 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -44651 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 301-342 chr4 188872922 188873097 + 2 NA Intergenic Intergenic 96352 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 261-294 chr4 136723028 136723242 + 2 NA Intergenic L1MCc|LINE|L1 -470621 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 366-133 chr14 96973789 96974013 + 2 NA Intergenic Intergenic 30322 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 540-121 chr2 137801863 137802246 + 2 NA Intergenic LTR8B|LTR|ERV1 125878 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 523-165 chr22 41187216 41187663 + 2 NA intron (NR_110514, intron 2 of 2) L1M4|LINE|L1 10062 NR_110514 101927279 Hs.517517 NR_110514 EP300-AS1 - EP300 antisense RNA 1 ncRNA 343-291 chr2 228090629 228090827 + 2 NA intron (NM_030623, intron 3 of 10) MSTB|LTR|ERVL-MaLR 90917 NM_030623 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 438-297 chr9 91792875 91793261 + 2 NA intron (NM_001318204, intron 1 of 7) L1M4|LINE|L1 -156723 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 360-329 chr4 64888823 64889080 + 2 NA Intergenic Intergenic 115549 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 1178-13 chr8 139864605 139865367 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -161863 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 222-126 chr15 98039738 98039919 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 36790 NR_146563 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 742-66 chr5 156544443 156544914 + 2 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 217514 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 355-470 chr7 70212884 70213157 + 2 NA intron (NM_015570, intron 4 of 18) L1MA4|LINE|L1 614545 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 376-267 chr4 27135971 27136194 + 2 NA Intergenic L1M4|LINE|L1 -81397 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 325-480 chr6 149517679 149517880 + 2 NA intron (NM_139126, intron 10 of 12) intron (NM_139126, intron 10 of 12) 28264 NM_139126 85313 Hs.744238 NM_139126 ENSG00000131013 PPIL4 HDCME13P peptidylprolyl isomerase like 4 protein-coding 326-60 chr10 31807654 31807919 + 2 NA exon (NM_001270699, exon 16 of 16) exon (NM_001270699, exon 16 of 16) 101140 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 248-238 chr3 19579009 19579175 + 2 NA Intergenic Intergenic -264161 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 265-18 chr1 180658467 180658680 + 2 NA intron (NR_137330, intron 1 of 12) AluY|SINE|Alu 26551 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 382-438 chr9 100882607 100882875 + 2 NA Intergenic Intergenic -145986 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 385-285 chr4 147464584 147464882 + 2 NA Intergenic Intergenic -16184 NM_001166055 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 209-264 chr5 155892530 155892697 + 2 NA Intergenic MER102a|DNA|hAT-Charlie -434144 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 339-2 chr1 18380481 18380808 + 2 NA Intergenic Intergenic -100286 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 324-564 chr9 69865660 69865872 + 2 NA intron (NM_001308084, intron 4 of 4) intron (NM_001308084, intron 4 of 4) 44949 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 435-16 chr1 114144525 114144940 + 2 NA intron (NM_001366225, intron 1 of 7) intron (NM_001366225, intron 1 of 7) 7708 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 387-256 chr4 103987404 103987733 + 2 NA Intergenic MLT-int|LTR|ERVL-MaLR -267583 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 427-59 chr12 101757795 101758214 + 2 NA intron (NM_024312, intron 16 of 20) intron (NM_024312, intron 16 of 20) -18532 NM_001177948 50511 Hs.506504 NM_153694 ENSG00000139351 SYCP3 COR1|RPRGL4|SCP3|SPGF4 synaptonemal complex protein 3 protein-coding 379-164 chr2 98456181 98456472 + 2 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 10316 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 193-144 chr3 157811867 157812010 + 2 NA Intergenic Intergenic 268594 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 401-24 chr10 33590029 33590241 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 182545 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 350-121 chr13 112921294 112921503 + 2 NA Intergenic Intergenic 47240 NR_034002 100289410 Hs.667436 NR_034002 MCF2L-AS1 - MCF2L antisense RNA 1 ncRNA 413-164 chr20 15312870 15313133 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 116161 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 555-60 chr15 86976945 86977405 + 2 NA intron (NR_135683, intron 1 of 2) intron (NR_135683, intron 1 of 2) 11251 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 392-206 chr3 99391100 99391423 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -247333 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 307-53 chr10 49343221 49343502 + 2 NA Intergenic L1MA3|LINE|L1 44191 NM_001135196 118461 Hs.585480 NM_199459 ENSG00000177354 C10orf71 CEFIP chromosome 10 open reading frame 71 protein-coding 127-18 chr11 80325072 80325174 + 2 NA Intergenic Intergenic 437680 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 242-252 chr4 21933970 21934150 + 2 NA intron (NM_147182, intron 1 of 8) intron (NM_147182, intron 1 of 8) 14691 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 291-25 chr1 169458415 169458588 + 2 NA intron (NM_001300968, intron 2 of 6) MER21C|LTR|ERVL 2168 NM_001300968 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 294-409 chr6 91392528 91392696 + 2 NA Intergenic Intergenic -129048 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 423-242 chr6 101041451 101041843 + 2 NA Intergenic Intergenic -160275 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 421-126 chr2 8008495 8008852 + 2 NA non-coding (NR_034135, exon 9 of 9) non-coding (NR_034135, exon 9 of 9) -31859 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 220-260 chr4 67359547 67359696 + 2 NA Intergenic L1M4b|LINE|L1 62379 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 304-346 chr3 89513923 89514211 + 2 NA Intergenic L1M4|LINE|L1 406446 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 297-263 chr20 39783287 39783475 + 2 NA Intergenic Intergenic -221080 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 185-188 chr7 8172772 8172865 + 2 NA intron (NM_001350836, intron 7 of 14) L3|LINE|CR1 89234 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 238-356 chr7 42161399 42161614 + 2 NA intron (NM_000168, intron 2 of 14) intron (NM_000168, intron 2 of 14) 75703 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 357-494 chrX 76017839 76018177 + 2 NA Intergenic L1PB1|LINE|L1 -154921 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 206-286 chr9 102046848 102046976 + 2 NA Intergenic L1M2|LINE|L1 -308332 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 296-305 chr3 111169918 111170169 + 2 NA intron (NM_001243288, intron 7 of 8) intron (NM_001243288, intron 7 of 8) 98227 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 351-515 chr9 71195642 71195886 + 2 NA intron (NM_001366143, intron 1 of 25) L1PREC2|LINE|L1 -74143 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 602-17 chr10 131484096 131484584 + 2 NA Intergenic Intergenic -172619 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 560-37 chr12 72782360 72782891 + 2 NA Intergenic Intergenic -376565 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 227-319 chr6 118451029 118451200 + 2 NA Intergenic L1MEg|LINE|L1 -50259 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 345-350 chr3 62973213 62973429 + 2 NA Intergenic Intergenic -97905 NM_183393 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 545-241 chr8 118480116 118480408 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -140739 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 267-177 chr2 40265949 40266177 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 164241 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 140-83 chr9 34488141 34488220 + 2 NA intron (NM_001281428, intron 4 of 19) MIRb|SINE|MIR 29375 NM_012144 27019 Hs.112667 NM_012144 ENSG00000122735 DNAI1 CILD1|DIC1|ICS1|PCD dynein axonemal intermediate chain 1 protein-coding 308-269 chr20 40039757 40039922 + 2 NA Intergenic Intergenic 35378 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 341-293 chr20 24506430 24506605 + 2 NA intron (NM_001323606, intron 2 of 4) intron (NM_001323606, intron 2 of 4) 36556 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 393-380 chr8 144928643 144928961 + 2 NA Intergenic Intergenic 22078 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 266-273 chr4 32177732 32177908 + 2 NA Intergenic MIR|SINE|MIR -155398 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 337-285 chr2 177814653 177814966 + 2 NA intron (NM_001077197, intron 10 of 20) intron (NM_001077197, intron 10 of 20) 73947 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 690-55 chr2 53384577 53385067 + 2 NA Intergenic MIRb|SINE|MIR -382961 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 260-218 chr2 126275668 126275891 + 2 NA Intergenic Intergenic -157794 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 540-153 chr4 15386683 15387061 + 2 NA intron (NM_001135171, intron 1 of 2) L2a|LINE|L2 12321 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 213-309 chrX 96568586 96568739 + 2 NA Intergenic L2c|LINE|L2 -116001 NM_007309 1730 Hs.226483 NM_006729 ENSG00000147202 DIAPH2 DIA|DIA2|DRF2|POF|POF2|POF2A diaphanous related formin 2 protein-coding 206-15 chr1 158590858 158591041 + 2 NA Intergenic L1ME2|LINE|L1 -11050 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 342-310 chr3 35366259 35366462 + 2 NA intron (NR_110817, intron 1 of 3) MSTC|LTR|ERVL-MaLR 27663 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 152-88 chr7 93382981 93383112 + 2 NA Intergenic Intergenic 99809 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 463-195 chr3 137678209 137678451 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -85985 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 467-118 chr18 50702372 50702691 + 2 NA intron (NM_002747, intron 2 of 5) Arthur1|DNA|hAT-Tip100 117485 NM_031939 83876 Hs.30495 NM_031939 ENSG00000134042 MRO B29|C18orf3 maestro protein-coding 592-42 chr13 74271151 74271610 + 2 NA Intergenic Intergenic 39936 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 601-90 chr3 35656919 35657353 + 2 NA intron (NM_016300, intron 1 of 19) intron (NM_016300, intron 1 of 19) 14779 NM_016300 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 400-28 chr10 17564183 17564529 + 2 NA Intergenic Intergenic 53018 NM_014241 9200 Hs.114062 NM_014241 ENSG00000165996 HACD1 CAP|PTPLA 3-hydroxyacyl-CoA dehydratase 1 protein-coding 317-521 chr9 8101752 8102007 + 2 NA Intergenic L1PA16|LINE|L1 -302101 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 527-66 chr12 130947145 130947477 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -6596 NM_001330497 283383 Hs.719239 NM_198827 ENSG00000111452 ADGRD1 GPR133|PGR25 adhesion G protein-coupled receptor D1 protein-coding 412-96 chr14 69874923 69875299 + 2 NA Intergenic Intergenic -4305 NM_022137 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 368-448 chr8 63908398 63908696 + 2 NA intron (NR_125826, intron 4 of 4) THE1B|LTR|ERVL-MaLR 139117 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 286-7 chr1 40518776 40519010 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 10174 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 276-21 chr1 168807350 168807585 + 2 NA Intergenic Intergenic 20526 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 319-566 chr9 16018787 16019099 + 2 NA Intergenic Intergenic 234164 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 220-19 chr1 158697059 158697258 + 2 NA Intergenic MIR|SINE|MIR 3538 NM_001005279 81448 Hs.554489 NM_001005279 ENSG00000196171 OR6K2 OR1-17 olfactory receptor family 6 subfamily K member 2 protein-coding 496-222 chr5 133681351 133681829 + 2 NA Intergenic Intergenic -69049 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 269-149 chr16 68582545 68582779 + 2 NA Intergenic Intergenic 43371 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 340-194 chr16 68554528 68554707 + 2 NA intron (NR_130976, intron 2 of 4) intron (NR_130976, intron 2 of 4) 15326 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 320-299 chr20 1074523 1074732 + 2 NA Intergenic Intergenic -38602 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 166-31 chr14 87178614 87178728 + 2 NA Intergenic Intergenic 272893 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 413-328 chr9 134212778 134213102 + 2 NA Intergenic Intergenic -48376 NR_023344 100151684 Hs.545589 NR_023344 ENSG00000221676 RNU6ATAC RNU6ATAC1|U6ATAC RNA, U6atac small nuclear (U12-dependent splicing) snRNA 240-21 chr1 191265067 191265254 + 2 NA Intergenic L1MD1|LINE|L1 -36662 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 276-135 chr13 102019197 102019383 + 2 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) 26714 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 453-215 chr5 156413798 156414077 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 86773 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 438-252 chr7 20427702 20427936 + 2 NA Intergenic L1PA15|LINE|L1 -96057 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 436-128 chr2 45580180 45580461 + 2 NA intron (NM_018079, intron 6 of 20) intron (NM_018079, intron 6 of 20) 30947 NM_018079 55133 Hs.14229 NM_018079 ENSG00000068784 SRBD1 - S1 RNA binding domain 1 protein-coding 227-93 chr13 26586451 26586638 + 2 NA intron (NM_006646, intron 1 of 9) L1M5|LINE|L1 28841 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 295-86 chr11 114224392 114224632 + 2 NA intron (NM_006006, intron 4 of 6) L2c|LINE|L2 -71301 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 377-121 chr14 57508079 57508306 + 2 NA Intergenic Intergenic -14335 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 481-23 chr10 29974585 29974938 + 2 NA Intergenic MER34A|LTR|ERV1 84825 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 356-113 chr12 88800820 88801028 + 2 NA Intergenic Intergenic 218768 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 390-300 chr5 114271775 114272103 + 2 NA Intergenic MIR|SINE|MIR -90131 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 585-165 chr8 141911453 141911834 + 2 NA Intergenic L1ME3D|LINE|L1 -125330 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 140-21 chr13 34781494 34781617 + 2 NA Intergenic LTR37-int|LTR|ERV1 -140870 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 243-404 chr6 155931724 155931921 + 2 NA Intergenic L1ME2|LINE|L1 -14975 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 311-367 chr4 21095967 21096171 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -112060 NM_001363504 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 279-161 chr2 7515874 7516111 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 94731 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 395-62 chr11 103430899 103431214 + 2 NA intron (NM_001377, intron 84 of 88) intron (NM_001377, intron 84 of 88) 321630 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 256-35 chr10 23210096 23210283 + 2 NA intron (NM_001365862, intron 15 of 15) intron (NM_001365862, intron 15 of 15) 17877 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 271-219 chr2 207796478 207796683 + 2 NA Intergenic MIRb|SINE|MIR -26674 NM_003468 7855 Hs.17631 NM_003468 ENSG00000163251 FZD5 C2orf31|HFZ5 frizzled class receptor 5 protein-coding 372-36 chr1 247033032 247033366 + 2 NA intron (NR_037894, intron 1 of 6) HERVL74-int|LTR|ERVL -25142 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 276-7 chr1 57362068 57362284 + 2 NA intron (NM_001353980, intron 4 of 5) MIRb|SINE|MIR 60936 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 507-12 chr1 169592611 169593041 + 2 NA intron (NM_003005, intron 14 of 16) L2c|LINE|L2 -6295 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 318-437 chr5 46285943 46286143 + 2 NA Intergenic ALR/Alpha|Satellite|centr -589663 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 401-108 chr15 92231316 92231633 + 2 NA Intergenic L1MB8|LINE|L1 -162407 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 276-125 chr13 44225224 44225438 + 2 NA Intergenic Intergenic -29131 NR_107046 102465876 NR_107046 ENSG00000276319 MIR8079 hsa-mir-8079 microRNA 8079 ncRNA 287-439 chr9 86991358 86991598 + 2 NA intron (NR_049794, intron 5 of 6) MER96B|DNA|hAT-Tip100 42780 NR_049794 100506834 Hs.553987 NR_049794 ENSG00000226237 GAS1RR LncRNA-Hh GAS1 adjacent regulatory RNA ncRNA 240-451 chrX 107804720 107804911 + 2 NA Intergenic AluJb|SINE|Alu -21051 NM_012216 11043 Hs.12256 NM_012216 ENSG00000080561 MID2 FXY2|MRX101|RNF60|TRIM1 midline 2 protein-coding 353-419 chr5 109240176 109240514 + 2 NA intron (NR_149040, intron 3 of 3) intron (NR_149040, intron 3 of 3) 86024 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 236-213 chr3 27978009 27978179 + 2 NA Intergenic L1MD1|LINE|L1 -143958 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 482-234 chr6 163584054 163584428 + 2 NA Intergenic Intergenic 87243 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 336-195 chr16 30365634 30365881 + 2 NA intron (NM_015527, intron 1 of 8) intron (NM_015527, intron 1 of 8) 4737 NM_015527 26000 Hs.632182 NM_015527 ENSG00000169221 TBC1D10B EPI64B|FP2461 TBC1 domain family member 10B protein-coding 577-72 chr16 68547158 68547579 + 2 NA intron (NR_130976, intron 2 of 4) L1MB3|LINE|L1 8077 NR_130978 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 278-74 chr12 59410091 59410323 + 2 NA Intergenic Intergenic -185822 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 248-168 chr2 7183535 7183684 + 2 NA Intergenic AluSc|SINE|Alu -105729 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 330-242 chr19 43872532 43872717 + 2 NA exon (NM_001033719, exon 2 of 2) exon (NM_001033719, exon 2 of 2) 7512 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 251-41 chr10 111398684 111398876 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 284489 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 672-66 chr22 26155018 26155534 + 2 NA Intergenic LTR16C|LTR|ERVL -14186 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 450-254 chr5 180933918 180934206 + 2 NA intron (NM_001159710, intron 2 of 6) L1M3b|LINE|L1 24498 NM_001159710 79908 Hs.189109 NM_024850 ENSG00000113303 BTNL8 BTN9.2 butyrophilin like 8 protein-coding 450-261 chr6 68500371 68500730 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger 133774 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 540-79 chr15 81423664 81423987 + 2 NA intron (NR_120365, intron 6 of 6) L1ME4a|LINE|L1 -49612 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 313-276 chr2 128818670 128818953 + 2 NA Intergenic Intergenic -45789 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 167-37 chr15 52875456 52875583 + 2 NA Intergenic MIRb|SINE|MIR -85183 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 248-175 chr2 31714131 31714326 + 2 NA Intergenic L1M1|LINE|L1 89752 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 545-111 chr2 78667825 78668292 + 2 NA Intergenic L1P4a|LINE|L1 122527 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 658-26 chr10 129512273 129512752 + 2 NA intron (NM_002412, intron 1 of 4) MIRb|SINE|MIR 45271 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 296-202 chr19 5503300 5503464 + 2 NA Intergenic AluSx3|SINE|Alu 47965 NM_181710 148066 Hs.126496 NM_181710 ENSG00000105428 ZNRF4 RNF204|SPERIZIN|Ssrzf1|spzn zinc and ring finger 4 protein-coding 302-467 chr8 127080269 127080448 + 2 NA non-coding (NR_109833, exon 1 of 1) non-coding (NR_109833, exon 1 of 1) 484 NR_109833 101867536 Hs.652970 NR_109833 ENSG00000282961 PRNCR1 CARLo-3|PCAT8 prostate cancer associated non-coding RNA 1 ncRNA 384-300 chr5 108375325 108375624 + 2 NA intron (NM_001163315, intron 1 of 8) L1M4|LINE|L1 6624 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 379-340 chr8 77515213 77515468 + 2 NA Intergenic Intergenic 64643 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 610-159 chr7 32114049 32114507 + 2 NA intron (NM_001322059, intron 3 of 17) L1PA8|LINE|L1 -42842 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 326-263 chr2 133318003 133318176 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 51894 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 475-234 chr5 158343373 158343672 + 2 NA intron (NR_109888, intron 4 of 6) L1ME4b|LINE|L1 66251 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 209-25 chr1 233830965 233831134 + 2 NA Intergenic L1MB1|LINE|L1 -73627 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 496-46 chr11 24399647 24399993 + 2 NA Intergenic MIRb|SINE|MIR -97233 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 413-137 chr2 67188347 67188696 + 2 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -24887 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 393-228 chr3 135144986 135145279 + 2 NA intron (NM_004441, intron 5 of 15) intron (NM_004441, intron 5 of 15) 349872 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 199-184 chr4 108153986 108154138 + 2 NA intron (NM_001130713, intron 3 of 10) L1ME4a|LINE|L1 12735 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 382-130 chr16 58880214 58880465 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -146023 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 265-194 chr2 135245179 135245419 + 2 NA intron (NM_001286569, intron 13 of 21) intron (NM_001286569, intron 13 of 21) 108671 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 572-137 chr5 40946300 40946783 + 2 NA intron (NM_000587, intron 7 of 17) UCON55|DNA|TcMar-Tigger 37044 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 254-238 chr3 26821354 26821563 + 2 NA Intergenic MER61-int|LTR|ERV1 126901 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 315-84 chr11 41467540 41467837 + 2 NA Intergenic AluJb|SINE|Alu -8036 NM_001258419 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 222-34 chr10 55028747 55028941 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -227553 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 287-252 chr3 89658529 89658744 + 2 NA Intergenic L1PB4|LINE|L1 551015 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 366-471 chr9 103854547 103854758 + 2 NA Intergenic FRAM|SINE|Alu -145057 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 140-82 chr9 28209726 28209824 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 509530 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 394-289 chr6 130266743 130266982 + 2 NA intron (NM_001258275, intron 2 of 13) Harlequin-int|LTR|ERV1 -43911 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 358-236 chr2 153386731 153387034 + 2 NA Intergenic Intergenic 91880 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 279-109 chr14 95963302 95963521 + 2 NA Intergenic MIRb|SINE|MIR -75913 NM_001282464 56967 Hs.6434 NM_020215 ENSG00000227051 C14orf132 C14orf88 chromosome 14 open reading frame 132 protein-coding 273-9 chr1 50294546 50294732 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 128804 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 1101-14 chr5 38279054 38279830 + 2 NA intron (NM_152403, intron 1 of 21) L1MA8|LINE|L1 11544 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 454-112 chr16 54631111 54631467 + 2 NA Intergenic L1ME3Cz|LINE|L1 216944 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 203-183 chr5 101951006 101951191 + 2 NA Intergenic Intergenic 345186 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 360-428 chr7 7332178 7332372 + 2 NA Intergenic MIRb|SINE|MIR 77121 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 367-266 chr22 41801701 41801955 + 2 NA intron (NM_024821, intron 1 of 6) MER65A|LTR|ERV1 1149 NM_024821 79879 Hs.474991 NM_024821 ENSG00000100147 CCDC134 - coiled-coil domain containing 134 protein-coding 273-369 chr5 144319934 144320094 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 114623 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 249-444 chr9 26196169 26196386 + 2 NA Intergenic L1ME4c|LINE|L1 129602 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 263-76 chr12 4001208 4001395 + 2 NA Intergenic Intergenic -127853 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 178-55 chr18 2397236 2397354 + 2 NA Intergenic L1ME4a|LINE|L1 174210 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 406-268 chr7 10232370 10232767 + 2 NA Intergenic L1ME1|LINE|L1 -470108 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 208-158 chr3 2917861 2917999 + 2 NA intron (NM_175607, intron 12 of 24) intron (NM_175607, intron 12 of 24) 25715 NM_001206956 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 312-71 chr11 8171466 8171695 + 2 NA Intergenic L2c|LINE|L2 -2555 NM_001206672 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 240-235 chr2 144793149 144793332 + 2 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 125273 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 400-276 chr5 26389506 26389795 + 2 NA Intergenic Intergenic 648936 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 169-130 chr8 16582774 16582921 + 2 NA Intergenic L1M4|LINE|L1 -390056 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 643-33 chr14 63084105 63084676 + 2 NA Intergenic L1MB8|LINE|L1 -38932 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 223-137 chr19 29272351 29272514 + 2 NA Intergenic Intergenic -59281 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 328-421 chr4 144649368 144649601 + 2 NA intron (NM_022475, intron 1 of 12) intron (NM_022475, intron 1 of 12) 3328 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 211-191 chr3 96059902 96060060 + 2 NA Intergenic Intergenic -299983 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 361-405 chr6 169151153 169151395 + 2 NA Intergenic Intergenic 11027 NR_132622 101929484 Hs.364166 NR_132622 ENSG00000223485 LINC01615 - long intergenic non-protein coding RNA 1615 ncRNA 938-28 chr8 142180544 142181269 + 2 NA Intergenic Intergenic 4567 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 740-24 chr13 21945940 21946532 + 2 NA Intergenic Intergenic -68076 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 538-148 chr3 78750896 78751368 + 2 NA intron (NM_002941, intron 4 of 30) intron (NM_002941, intron 4 of 30) 268327 NM_133631 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 325-229 chr17 71532175 71532461 + 2 NA Intergenic Intergenic -330139 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 490-93 chr14 86485438 86485830 + 2 NA Intergenic Intergenic -420144 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 194-79 chr18 40603727 40603885 + 2 NA Intergenic Intergenic 537520 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 325-519 chr7 139822057 139822256 + 2 NA intron (NM_001166254, intron 3 of 14) MIRb|SINE|MIR -7108 NM_001061 6916 Hs.520757 NM_001061 ENSG00000059377 TBXAS1 BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS thromboxane A synthase 1 protein-coding 214-220 chr3 144695699 144695879 + 2 NA Intergenic Intergenic 722708 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 789-17 chr13 86777983 86778752 + 2 NA Intergenic L1PA11|LINE|L1 -133553 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 406-161 chr2 228394661 228395052 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -213169 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 364-422 chr7 106970457 106970757 + 2 NA Intergenic HAL1ME|LINE|L1 -74098 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 321-234 chr17 67265632 67265878 + 2 NA Intergenic Intergenic -20559 NM_014877 9931 Hs.370140 NM_014877 ENSG00000198265 HELZ DHRC|DRHC|HUMORF5 helicase with zinc finger protein-coding 414-149 chr2 57360177 57360476 + 2 NA Intergenic L1PA15|LINE|L1 -547325 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 287-258 chr3 104281042 104281310 + 2 NA Intergenic MER101-int|LTR|ERV1 -757060 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 400-268 chr4 160388359 160388618 + 2 NA Intergenic Intergenic -610704 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 350-181 chr17 65763494 65763740 + 2 NA intron (NM_001353129, intron 21 of 26) L1MCa|LINE|L1 62834 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 360-11 chr1 112776764 112777100 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 56365 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 499-115 chr2 40921369 40921687 + 2 NA Intergenic Intergenic -409093 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 487-244 chr6 40756860 40757211 + 2 NA Intergenic L2c|LINE|L2 -169671 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 251-337 chr6 64419848 64420082 + 2 NA intron (NM_001292009, intron 28 of 43) THE1C-int|LTR|ERVL-MaLR 613129 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 254-156 chr17 61221266 61221501 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 146321 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 263-231 chr20 41385438 41385655 + 2 NA Intergenic L1ME2z|LINE|L1 -18728 NM_052846 90187 Hs.726525 NM_052846 ENSG00000183798 EMILIN3 C20orf130|EMILIN5|dJ620E11.4 elastin microfibril interfacer 3 protein-coding 326-500 chr7 56708009 56708176 + 2 NA Intergenic Intergenic 104644 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 406-292 chr8 63936336 63936695 + 2 NA intron (NR_125826, intron 4 of 4) L1MD2|LINE|L1 167085 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 609-2 chr1 50304863 50305260 + 2 NA Intergenic Intergenic 118382 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 279-386 chr7 31170680 31170845 + 2 NA Intergenic Intergenic 118301 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 234-181 chr2 116785930 116786123 + 2 NA Intergenic Intergenic -1028665 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 525-288 chrX 65508567 65508932 + 2 NA TTS (NM_001010888) TTS (NM_001010888) 20014 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 362-202 chr18 75305937 75306283 + 2 NA Intergenic L1MB3|LINE|L1 94581 NM_001308210 10194 Hs.284217 NM_005786 ENSG00000179981 TSHZ1 CAA|NY-CO-33|SDCCAG33|TSH1 teashirt zinc finger homeobox 1 protein-coding 260-126 chr14 45857151 45857384 + 2 NA Intergenic L1ME1|LINE|L1 -141665 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 261-137 chr17 11441575 11441805 + 2 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -156780 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 267-306 chr4 167972797 167972988 + 2 NA Intergenic L1MA2|LINE|L1 -119645 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 557-202 chr8 120395046 120395429 + 2 NA TTS (NM_014078) TTS (NM_014078) 49913 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 366-161 chr17 34568629 34568965 + 2 NA Intergenic MIRb|SINE|MIR 10572 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 270-235 chr3 82102260 82102505 + 2 NA intron (NR_147146, intron 1 of 8) L1MC4|LINE|L1 116240 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 355-290 chr21 23737552 23737731 + 2 NA Intergenic L2c|LINE|L2 -352806 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 264-100 chr12 125816994 125817187 + 2 NA Intergenic Intergenic 166284 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 525-232 chr6 159334828 159335146 + 2 NA Intergenic L1MCc|LINE|L1 -48544 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 176-155 chr9 105755773 105755907 + 2 NA intron (NM_018112, intron 5 of 5) L1MB8|LINE|L1 61299 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 230-390 chr8 137465151 137465307 + 2 NA Intergenic Intergenic -51641 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 251-369 chr7 48722294 48722504 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -202148 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 299-338 chr4 138618375 138618612 + 2 NA Intergenic Intergenic 308782 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 437-105 chr18 5171129 5171560 + 2 NA intron (NM_001330553, intron 1 of 1) L1MA3|LINE|L1 25913 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 124-15 chr11 81515252 81515364 + 2 NA Intergenic Intergenic 375528 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 290-412 chr7 33120846 33121108 + 2 NA Intergenic L1MA2|LINE|L1 -8308 NR_145412 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 267-458 chrX 54681315 54681545 + 2 NA Intergenic L1PA8A|LINE|L1 116825 NM_198510 347365 Hs.454272 NM_198510 ENSG00000102313 ITIH6 ITIH5L|UNQ6369|dJ14O9.1 inter-alpha-trypsin inhibitor heavy chain family member 6 protein-coding 382-221 chr2 147265328 147265680 + 2 NA Intergenic L1M1|LINE|L1 -579013 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 468-189 chr3 15944017 15944382 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 70428 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 265-362 chr7 78350575 78350769 + 2 NA intron (NR_003680, intron 3 of 5) intron (NR_003680, intron 3 of 5) 3430 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 191-127 chr21 24312591 24312730 + 2 NA intron (NR_109963, intron 1 of 3) intron (NR_109963, intron 1 of 3) 8717 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 524-251 chr8 35562950 35563321 + 2 NA intron (NM_001322818, intron 2 of 16) L1MA4|LINE|L1 18743 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 263-101 chr14 44780563 44780758 + 2 NA intron (NR_146457, intron 2 of 4) Tigger9a|DNA|TcMar-Tigger 18466 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 387-107 chr14 62574421 62574672 + 2 NA Intergenic L1MA1|LINE|L1 -434573 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 480-226 chr5 8790008 8790318 + 2 NA Intergenic Intergenic -49569 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 599-21 chr11 25483469 25483901 + 2 NA Intergenic L1PB1|LINE|L1 -705438 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 375-444 chr9 31963048 31963331 + 2 NA Intergenic L1PA11|LINE|L1 -421414 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 453-137 chr2 219681474 219681766 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 53990 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 384-376 chr8 108670909 108671220 + 2 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 116530 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 318-86 chr10 119356689 119356871 + 2 NA intron (NM_005308, intron 2 of 15) intron (NM_005308, intron 2 of 15) -21192 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 322-506 chr7 109213129 109213307 + 2 NA Intergenic L1PA11|LINE|L1 -328631 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 605-114 chr7 104611096 104611549 + 2 NA intron (NM_199000, intron 1 of 2) MIR|SINE|MIR 192770 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 317-269 chr2 231819155 231819341 + 2 NA Intergenic Intergenic 32803 NM_001282950 64708 Hs.335061 NM_022730 ENSG00000144524 COPS7B CSN7B|SGN7b COP9 signalosome subunit 7B protein-coding 312-288 chr20 31228279 31228534 + 2 NA Intergenic Intergenic -29258 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 296-100 chr12 23377496 23377657 + 2 NA Intergenic L1PA17|LINE|L1 201940 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 305-510 chr7 78082351 78082624 + 2 NA intron (NM_001301128, intron 19 of 20) intron (NM_001301128, intron 19 of 20) 242357 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 202-63 chr14 25871808 25871929 + 2 NA Intergenic Intergenic 681562 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 292-444 chr8 120725524 120725756 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -35613 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 248-312 chr5 60516526 60516706 + 2 NA intron (NR_024617, intron 1 of 3) intron (NR_024617, intron 1 of 3) -20330 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 591-126 chr5 20650346 20650852 + 2 NA intron (NR_149120, intron 1 of 11) L1PA8A|LINE|L1 -35064 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 142-5 chr1 229811111 229811197 + 2 NA Intergenic HAL1|LINE|L1 74664 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 316-555 chr8 94851621 94851891 + 2 NA intron (NR_073445, intron 13 of 27) intron (NR_073445, intron 13 of 27) 28466 NR_073445 55656 Hs.727669 NM_017864 ENSG00000164941 INTS8 C8orf52|INT8 integrator complex subunit 8 protein-coding 332-417 chr5 63370655 63370871 + 2 NA Intergenic L1ME2|LINE|L1 591529 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 259-67 chr11 21293979 21294169 + 2 NA intron (NM_201551, intron 14 of 18) L1PA7|LINE|L1 624488 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 310-51 chr10 84892478 84892678 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 306327 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 414-61 chr12 9238757 9238979 + 2 NA TTS (NR_036052) TTS (NR_036052) 683 NR_036263 100422872 NR_036263 ENSG00000283429 MIR1244-3 - microRNA 1244-3 ncRNA 608-136 chr6 151183614 151184191 + 2 NA Intergenic MER74A|LTR|ERVL 44555 NR_125868 102723831 Hs.684425 NR_125868 LOC102723831 - uncharacterized LOC102723831 ncRNA 289-179 chr17 59784202 59784460 + 2 NA intron (NM_001329400, intron 5 of 9) intron (NM_001329400, intron 5 of 9) -56935 NR_029493 406991 Hs.444569 NR_029493 ENSG00000284190 MIR21 MIRN21|hsa-mir-21|miR-21|miRNA21 microRNA 21 ncRNA 169-92 chr5 9219471 9219555 + 2 NA intron (NM_003966, intron 8 of 22) MLT1B|LTR|ERVL-MaLR -165618 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 336-277 chr2 103089464 103089683 + 2 NA Intergenic L1PREC2|LINE|L1 -105144 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 582-64 chr19 57111104 57111585 + 2 NA Intergenic Intergenic -8797 NM_020903 57663 Hs.515632 NM_020903 ENSG00000131864 USP29 HOM-TES-84/86 ubiquitin specific peptidase 29 protein-coding 310-29 chr1 206012120 206012337 + 2 NA intron (NM_148964, intron 7 of 7) intron (NM_148964, intron 7 of 7) -8833 NM_001304839 338382 Hs.534612 NM_177403 ENSG00000276600 RAB7B RAB7 RAB7B, member RAS oncogene family protein-coding 321-587 chr8 142044055 142044282 + 2 NA Intergenic L1M5|LINE|L1 -132171 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 349-292 chr20 41715885 41716117 + 2 NA Intergenic Intergenic -97624 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 225-44 chr10 106673759 106673923 + 2 NA intron (NM_001206569, intron 14 of 25) intron (NM_001206569, intron 14 of 25) 490865 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 166-17 chr12 70416498 70416649 + 2 NA intron (NM_014505, intron 2 of 2) intron (NM_014505, intron 2 of 2) 50283 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 432-106 chr18 416507 416804 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 84046 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 204-74 chr13 64392166 64392334 + 2 NA Intergenic Intergenic -316239 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 350-235 chr2 111014845 111015171 + 2 NA intron (NM_001371254, intron 15 of 18) L1ME2|LINE|L1 100580 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 273-263 chr20 54758292 54758519 + 2 NA Intergenic L1MCb|LINE|L1 282812 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 286-353 chr5 40282315 40282546 + 2 NA Intergenic L1M5|LINE|L1 230139 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 225-59 chr11 54742339 54742508 + 2 NA Intergenic L1PA4|LINE|L1 35591 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 274-31 chr10 10367908 10368099 + 2 NA Intergenic Intergenic 94346 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 398-254 chr4 179048276 179048602 + 2 NA Intergenic Intergenic -1140503 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 176-160 chrX 82400709 82400815 + 2 NA Intergenic L1M4|LINE|L1 -1107528 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 391-272 chr4 156800510 156800784 + 2 NA intron (NM_016205, intron 3 of 5) intron (NM_016205, intron 3 of 5) 171152 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 227-46 chr10 81176361 81176523 + 2 NA Intergenic Intergenic 526645 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 384-122 chr15 79419334 79419700 + 2 NA Intergenic Intergenic -12999 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 372-153 chr14 82496631 82496836 + 2 NA Intergenic Intergenic -145899 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 353-53 chr10 34439479 34439767 + 2 NA intron (NM_001184791, intron 4 of 20) AluSz|SINE|Alu 375673 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 610-157 chr7 12583864 12584437 + 2 NA intron (NR_156701, intron 3 of 14) intron (NR_156701, intron 3 of 14) -5373 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 514-140 chr2 43754616 43754998 + 2 NA intron (NM_172069, intron 25 of 29) intron (NM_172069, intron 25 of 29) -19232 NM_001193464 51626 Hs.371597 NM_015522 ENSG00000138036 DYNC2LI1 CGI-60|D2LIC|LIC3 dynein cytoplasmic 2 light intermediate chain 1 protein-coding 206-38 chr10 90384382 90384584 + 2 NA Intergenic L1M2|LINE|L1 156322 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 193-121 chr2 179470567 179470704 + 2 NA intron (NM_001352810, intron 6 of 10) MER41-int|LTR|ERV1 91953 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 339-222 chr18 4966741 4967011 + 2 NA Intergenic L1MA2|LINE|L1 -114306 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 303-297 chr3 161792930 161793211 + 2 NA Intergenic LTR37B|LTR|ERV1 296262 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 227-409 chrX 84833284 84833422 + 2 NA Intergenic Intergenic -100798 NR_024062 100131816 Hs.460809 NM_178567 ENSG00000229547 UBE2DNL - ubiquitin conjugating enzyme E2 D N-terminal like (pseudogene) pseudo 506-140 chr2 65031786 65032205 + 2 NA Intergenic Tigger8|DNA|TcMar-Tigger -24421 NM_001319100 23177 Hs.709257 NM_015147 ENSG00000011523 CEP68 KIAA0582 centrosomal protein 68 protein-coding 134-74 chr6 25944527 25944635 + 2 NA Intergenic L1MA5|LINE|L1 -13890 NM_001286123 10246 Hs.591802 NM_005835 ENSG00000112337 SLC17A2 NPT3 solute carrier family 17 member 2 protein-coding 250-119 chr14 48621297 48621533 + 2 NA Intergenic Intergenic -826401 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 356-45 chr10 39203281 39203542 + 2 NA Intergenic HERVS71-int|LTR|ERV1 506815 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 230-387 chr8 125618569 125618774 + 2 NA Intergenic Intergenic 186462 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 359-339 chr3 177380078 177380379 + 2 NA Intergenic AluJb|SINE|Alu -61693 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 217-197 chr2 216990401 216990517 + 2 NA Intergenic Intergenic 119687 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 247-363 chr6 99638221 99638372 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 31522 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 351-513 chr9 36699304 36699501 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 124197 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 382-246 chr21 45188455 45188762 + 2 NA intron (NR_027674, intron 8 of 11) L1ME3Cz|LINE|L1 36078 NM_001346687 104 Hs.474018 NM_001112 ENSG00000197381 ADARB1 ADAR2|DRABA2|DRADA2|RED1 adenosine deaminase RNA specific B1 protein-coding 130-64 chr4 123897117 123897195 + 2 NA intron (NR_027105, intron 4 of 5) L2c|LINE|L2 122892 NR_027106 285419 Hs.535763 NR_027105 ENSG00000249464 LINC01091 - long intergenic non-protein coding RNA 1091 ncRNA 321-463 chr5 62304363 62304576 + 2 NA Intergenic Intergenic -1693 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 680-4 chr1 63710648 63711237 + 2 NA Intergenic Intergenic -63075 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 213-190 chr3 184085100 184085288 + 2 NA Intergenic LTR37A|LTR|ERV1 -11870 NM_198313 285242 Hs.449179 NM_182589 ENSG00000186038 HTR3E 5-HT3-E|5-HT3E|5-HT3c1 5-hydroxytryptamine receptor 3E protein-coding 638-102 chr4 33441465 33441897 + 2 NA Intergenic Intergenic 598212 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 393-379 chr8 144357605 144357825 + 2 NA promoter-TSS (NM_024531) promoter-TSS (NM_024531) 757 NM_012162 26233 Hs.12271 NM_012162 ENSG00000182325 FBXL6 FBL6|FBL6A|PP14630 F-box and leucine rich repeat protein 6 protein-coding 410-275 chr7 34741582 34741788 + 2 NA intron (NR_015356, intron 2 of 4) L1M4|LINE|L1 16587 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 443-75 chr12 125860658 125860944 + 2 NA Intergenic Intergenic 122573 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 410-182 chr3 2501342 2501635 + 2 NA intron (NM_175607, intron 3 of 24) MLT1D|LTR|ERVL-MaLR 262659 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 326-509 chr7 106356781 106357004 + 2 NA Intergenic Intergenic -71909 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 304-575 chrX 151781042 151781227 + 2 NA Intergenic Intergenic 46388 NM_005140 1260 Hs.447360 NM_005140 ENSG00000183862 CNGA2 CNCA|CNCA1|CNG2|OCNC1|OCNCALPHA|OCNCa cyclic nucleotide gated channel alpha 2 protein-coding 297-91 chr11 115587183 115587378 + 2 NA Intergenic L1MB8|LINE|L1 -82865 NM_001301045 23705 Hs.370510 NM_014333 ENSG00000182985 CADM1 BL2|IGSF4|IGSF4A|NECL2|Necl-2|RA175|ST17|SYNCAM|TSLC1|sTSLC-1|sgIGSF|synCAM1 cell adhesion molecule 1 protein-coding 259-309 chr5 31724557 31724730 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 85512 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 341-461 chr6 51680853 51681024 + 2 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 59068 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 267-404 chr7 88654667 88654875 + 2 NA Intergenic Intergenic -104929 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 325-87 chr10 121134100 121134272 + 2 NA Intergenic Intergenic 282824 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 280-100 chr12 118937327 118937563 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -44096 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 557-168 chr6 42321243 42321621 + 2 NA intron (NM_001297573, intron 3 of 17) HAL1|LINE|L1 -103571 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 352-53 chr10 75706275 75706568 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -6034 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 489-255 chr8 73290272 73290581 + 2 NA TTS (NM_001363737) TTS (NM_001363737) 3207 NM_000971 6129 Hs.421257 NM_000971 ENSG00000147604 RPL7 L7|humL7-1 ribosomal protein L7 protein-coding 387-178 chr2 106894813 106895093 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -7844 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 312-19 chr1 119125533 119125774 + 2 NA intron (NM_015836, intron 1 of 5) intron (NM_015836, intron 1 of 5) -14743 NR_125977 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 485-5 chr1 45694355 45694675 + 2 NA TTS (NM_016486) TTS (NM_016486) 6334 NM_016486 51249 Hs.699548 NM_016486 ENSG00000159596 TMEM69 C1orf154 transmembrane protein 69 protein-coding 208-145 chr20 11325802 11325983 + 2 NA Intergenic Intergenic -52509 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 303-260 chr21 19708959 19709149 + 2 NA Intergenic Intergenic 190701 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 363-343 chr4 117082315 117082630 + 2 NA Intergenic Intergenic 3104 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 496-264 chr7 57259824 57260233 + 2 NA Intergenic Intergenic -37854 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 259-173 chr19 428237 428444 + 2 NA intron (NM_012435, intron 9 of 12) intron (NM_012435, intron 9 of 12) -19193 NM_001136263 126567 Hs.223770 NM_001136263 ENSG00000183186 C2CD4C FAM148C|KIAA1957|NLF3 C2 calcium dependent domain containing 4C protein-coding 465-117 chr19 12346000 12346315 + 2 NA 3' UTR (NM_030824, exon 6 of 6) 3' UTR (NM_030824, exon 6 of 6) -12524 NM_001363608 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 311-290 chr2 239172318 239172574 + 2 NA intron (NM_006037, intron 5 of 26) L1ME3A|LINE|L1 23011 NR_026664 85009 Hs.744565 NM_032923 MGC16025 - uncharacterized LOC85009 ncRNA 482-209 chr5 133307711 133308155 + 2 NA intron (NM_015082, intron 6 of 15) AluY|SINE|Alu 119773 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 522-102 chr17 14638026 14638380 + 2 NA Intergenic Intergenic 334463 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 552-205 chr8 36042974 36043485 + 2 NA Intergenic L1PA3|LINE|L1 -332909 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 359-384 chr5 28307956 28308188 + 2 NA Intergenic L1PA16|LINE|L1 -20407 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 403-158 chr2 80440361 80440577 + 2 NA intron (NM_001282599, intron 3 of 11) intron (NM_001282599, intron 3 of 11) 127090 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 350-228 chr2 96696194 96696430 + 2 NA intron (NM_001293083, intron 37 of 52) AluSq|SINE|Alu 43764 NM_030805 81562 Hs.655743 NM_030805 ENSG00000114988 LMAN2L MRT52|VIPL lectin, mannose binding 2 like protein-coding 423-306 chr9 3929653 3930027 + 2 NA intron (NM_001042413, intron 6 of 10) intron (NM_001042413, intron 6 of 10) 31194 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 231-212 chr22 49125235 49125430 + 2 NA Intergenic L1ME3D|LINE|L1 258562 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 405-60 chr12 47052217 47052425 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -27282 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 264-352 chr6 44866830 44867042 + 2 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -315055 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 309-408 chr4 124836104 124836345 + 2 NA Intergenic L1MCc|LINE|L1 -123492 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 291-274 chr22 48664130 48664369 + 2 NA intron (NM_001082967, intron 2 of 3) MER44C|DNA|TcMar-Tigger 87909 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 293-467 chr8 141555829 141556114 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -48741 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 355-530 chr9 26065770 26065965 + 2 NA promoter-TSS (NM_001004352) promoter-TSS (NM_001004352) -808 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 274-403 chr8 129126730 129126920 + 2 NA Intergenic Intergenic 114415 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 428-128 chr2 80813858 80814115 + 2 NA Intergenic Intergenic 500607 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 275-160 chr18 38707869 38708084 + 2 NA Intergenic L2a|LINE|L2 914199 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 301-414 chr7 12675594 12675770 + 2 NA Intergenic L1P2|LINE|L1 -11145 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 613-98 chr4 79165681 79166009 + 2 NA intron (NR_038342, intron 3 of 5) intron (NR_038342, intron 3 of 5) 160216 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 238-261 chr4 46813905 46814078 + 2 NA intron (NM_130902, intron 2 of 2) L1M2|LINE|L1 95254 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 223-199 chr22 34146569 34146742 + 2 NA Intergenic L1M8|LINE|L1 -223767 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 401-56 chr11 95916538 95916852 + 2 NA intron (NM_001243571, intron 1 of 17) intron (NM_001243571, intron 1 of 17) 7412 NM_001243571 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 372-170 chr16 12704135 12704386 + 2 NA intron (NM_001099455, intron 2 of 2) intron (NM_001099455, intron 2 of 2) -16061 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 579-145 chr6 161860121 161860454 + 2 NA intron (NM_004562, intron 6 of 11) intron (NM_004562, intron 6 of 11) 389310 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 390-253 chr3 181143339 181143684 + 2 NA intron (NR_075091, intron 2 of 7) L1MC1|LINE|L1 -31633 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 219-228 chr3 44682967 44683138 + 2 NA intron (NR_157564, intron 1 of 2) MamRep1527|LTR|LTR 2601 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 254-155 chr17 60591479 60591700 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -8594 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 455-167 chr3 84415591 84415969 + 2 NA Intergenic L1MA4|LINE|L1 453795 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 668-101 chr8 29911691 29912301 + 2 NA Intergenic L1M2|LINE|L1 -9517 NR_024473 286135 Hs.376840 NR_024473 ENSG00000253279 LINC02209 FAM183CP long intergenic non-protein coding RNA 2209 ncRNA 211-320 chr9 24304219 24304361 + 2 NA Intergenic L1M4c|LINE|L1 241386 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 341-443 chr5 117089554 117089775 + 2 NA Intergenic Intergenic -325848 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 320-391 chr4 72469173 72469390 + 2 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 99940 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 210-250 chr6 109178077 109178226 + 2 NA intron (NR_152435, intron 1 of 45) L1MEg2|LINE|L1 12320 NR_152435 221262 Hs.373914 NM_173671 ENSG00000203799 CCDC162P C6orf183|C6orf184|C6orf185|CCDC162 coiled-coil domain containing 162, pseudogene pseudo 366-189 chr2 16381009 16381231 + 2 NA Intergenic Intergenic 284714 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 348-306 chr3 95762189 95762416 + 2 NA Intergenic Intergenic -79109 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 204-151 chr2 119998559 119998738 + 2 NA Intergenic L1M5|LINE|L1 -14429 NM_001184938 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 280-256 chr3 54623887 54624074 + 2 NA intron (NM_018398, intron 9 of 37) intron (NM_018398, intron 9 of 37) 15877 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 236-133 chr16 17914021 17914171 + 2 NA Intergenic L1MA4A|LINE|L1 418566 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 253-412 chr8 117621901 117622105 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR 101290 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 244-145 chr2 917847 917991 + 2 NA Intergenic Intergenic -12468 NR_110179 101060385 Hs.385965 NR_110179 ENSG00000228799 LINC01939 - long intergenic non-protein coding RNA 1939 ncRNA 303-396 chr6 61211371 61211610 + 2 NA Intergenic MER4-int|LTR|ERV1 -362640 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 515-155 chr3 18297400 18297739 + 2 NA Intergenic L1MA4A|LINE|L1 127770 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 276-369 chr5 42532578 42532763 + 2 NA intron (NM_001242400, intron 2 of 10) L1ME3Cz|LINE|L1 -15373 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 694-68 chr2 107103553 107104008 + 2 NA Intergenic L1MB4|LINE|L1 -216671 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 486-62 chr12 108406242 108406571 + 2 NA Intergenic L1MEa|LINE|L1 -67095 NM_004072 1240 Hs.197143 NM_004072 ENSG00000174600 CMKLR1 CHEMERINR|ChemR23|DEZ|RVER1 chemerin chemokine-like receptor 1 protein-coding 475-187 chr3 110618466 110618860 + 2 NA Intergenic Intergenic 451296 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 165-80 chr3 85021816 85021937 + 2 NA intron (NM_001167674, intron 1 of 9) intron (NM_001167674, intron 1 of 9) 40388 NR_132777 106635529 NR_132777 SNORA95 - small nucleolar RNA, H/ACA box 95 snoRNA 206-231 chr6 2738832 2738976 + 2 NA intron (NM_001012418, intron 2 of 12) L1MC1|LINE|L1 12018 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 212-98 chr14 57118288 57118454 + 2 NA Intergenic MER106B|DNA|hAT-Charlie 150534 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 346-336 chr3 190577440 190577731 + 2 NA intron (NR_157352, intron 3 of 10) AluJr|SINE|Alu 63500 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 382-124 chr15 92722392 92722616 + 2 NA Intergenic L1PB1|LINE|L1 -66729 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 310-146 chr14 89741710 89741994 + 2 NA Intergenic Intergenic -122687 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 649-46 chr2 49163898 49164469 + 2 NA Intergenic Intergenic -9656 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 352-545 chr8 134127813 134128015 + 2 NA Intergenic MIR|SINE|MIR 241418 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 432-100 chr17 19421320 19421665 + 2 NA Intergenic Intergenic 10260 NM_007148 7732 Hs.189482 NM_007148 ENSG00000128482 RNF112 BFP|ZNF179 ring finger protein 112 protein-coding 257-53 chr10 126613618 126613861 + 2 NA intron (NM_001350922, intron 2 of 8) intron (NM_001350922, intron 2 of 8) 56771 NM_001350923 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 288-311 chr5 7001942 7002214 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -174157 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 362-187 chr17 31662630 31662835 + 2 NA Intergenic Intergenic 87321 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 293-327 chr5 8793156 8793355 + 2 NA Intergenic Intergenic -46477 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 358-500 chr8 134251716 134252044 + 2 NA Intergenic AluSz|SINE|Alu -346191 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 466-151 chr2 197827221 197827644 + 2 NA intron (NM_006226, intron 1 of 5) MIR|SINE|MIR 22839 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 233-196 chr2 210694669 210694880 + 2 NA Intergenic LTR33|LTR|ERVL 77203 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 425-5 chr1 75985099 75985468 + 2 NA Intergenic L1P4a|LINE|L1 -26041 NR_125939 101927342 Hs.216363 NR_125939 LOC101927342 - uncharacterized LOC101927342 ncRNA 302-431 chr8 19173883 19174117 + 2 NA Intergenic Intergenic 71522 NR_038919 100128993 Hs.697742 NR_038919 LOC100128993 - uncharacterized LOC100128993 ncRNA 501-11 chr1 160873623 160874040 + 2 NA Intergenic L1MB7|LINE|L1 -10944 NM_001166663 51744 Hs.157872 NM_016382 ENSG00000122223 CD244 2B4|NAIL|NKR2B4|Nmrk|SLAMF4 CD244 molecule protein-coding 726-35 chr18 73368140 73368786 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 43522 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 324-158 chr14 53841031 53841213 + 2 NA Intergenic Intergenic 107362 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 459-33 chr10 56601446 56601786 + 2 NA Intergenic Intergenic -240343 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 157-31 chr12 115425667 115425768 + 2 NA Intergenic (GATA)n|Simple_repeat|Simple_repeat 722937 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 288-309 chr4 133059380 133059642 + 2 NA Intergenic MIRb|SINE|MIR 89605 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 379-197 chr21 14683662 14683958 + 2 NA Intergenic AluSx|SINE|Alu -40703 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 388-193 chr20 57134545 57134861 + 2 NA Intergenic L2a|LINE|L2 -78993 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 826-58 chr7 41544877 41545376 + 2 NA Intergenic L1ME4a|LINE|L1 -148793 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 429-169 chr2 212458348 212458708 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) -32168 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 423-114 chr18 72402425 72402801 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 141729 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 523-270 chr8 87659223 87659673 + 2 NA Intergenic Intergenic 214567 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 257-309 chr4 179263133 179263300 + 2 NA Intergenic L1MD|LINE|L1 -1355280 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 563-36 chr12 31843296 31843689 + 2 NA Intergenic MER92A|LTR|ERV1 43711 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 380-297 chr5 13635831 13636031 + 2 NA Intergenic L1MA8|LINE|L1 308549 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 302-400 chr7 13755927 13756092 + 2 NA Intergenic Intergenic 230505 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 613-106 chr5 76893735 76894338 + 2 NA intron (NM_130772, intron 4 of 4) MER4E|LTR|ERV1 44022 NM_130772 170591 Hs.482563 NM_130772 ENSG00000171643 S100Z Gm625|S100-zeta S100 calcium binding protein Z protein-coding 478-15 chr1 197310361 197310735 + 2 NA intron (NM_001257965, intron 3 of 14) intron (NM_001257965, intron 3 of 14) 42296 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 356-305 chr22 32365424 32365778 + 2 NA intron (NR_002596, intron 3 of 4) intron (NR_002596, intron 3 of 4) 5475 NR_001450 10737 Hs.274285 NR_001450 ENSG00000205853 RFPL3S NCRNA00005|RFPL3-AS|RFPL3-AS1|RFPL3ANT|RFPL3AS RFPL3 antisense ncRNA 349-288 chr20 19703196 19703397 + 2 NA intron (NM_020689, intron 15 of 16) intron (NM_020689, intron 15 of 16) -183225 NM_001242581 54453 Hs.472270 NM_018993 ENSG00000132669 RIN2 MACS|RASSF4 Ras and Rab interactor 2 protein-coding 227-218 chr22 27231694 27231895 + 2 NA Intergenic Intergenic -7115 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 260-308 chr4 58652487 58652730 + 2 NA Intergenic Intergenic -116280 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 308-335 chr4 65137368 65137569 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -132968 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 531-222 chr7 5499760 5500282 + 2 NA intron (NM_024963, intron 3 of 4) AluJo|SINE|Alu -4104 NR_030318 693174 NR_030318 ENSG00000207973 MIR589 MIRN589|hsa-mir-589|mir-589 microRNA 589 ncRNA 227-120 chr15 85111120 85111274 + 2 NA intron (NM_001243137, intron 12 of 21) L1ME2|LINE|L1 123584 NR_158179 101929479 Hs.681665 NR_158179 LOC101929479 - golgin A2 pseudogene pseudo 293-150 chr17 13931331 13931550 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -93058 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 296-246 chr2 158063293 158063563 + 2 NA intron (NM_001135098, intron 2 of 8) intron (NM_001135098, intron 2 of 8) -38442 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 269-287 chr4 99375999 99376162 + 2 NA Intergenic Intergenic -23334 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 183-166 chr8 120912612 120912775 + 2 NA Intergenic Intergenic -100647 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 532-280 chr8 138586504 138586891 + 2 NA Intergenic L1MC1|LINE|L1 -88967 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 299-483 chr9 73403592 73403820 + 2 NA Intergenic Intergenic 251841 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 292-31 chr1 219280955 219281228 + 2 NA Intergenic Intergenic 106122 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 516-223 chr6 44869973 44870362 + 2 NA intron (NM_181356, intron 12 of 12) intron (NM_181356, intron 12 of 12) -318286 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 344-381 chr5 41313610 41313809 + 2 NA exon (NM_001005473, exon 3 of 3) exon (NM_001005473, exon 3 of 3) -52240 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 335-179 chr15 96201327 96201619 + 2 NA intron (NR_125738, intron 2 of 4) AluSp|SINE|Alu -73632 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 257-360 chr6 84563244 84563428 + 2 NA Intergenic L1MA3|LINE|L1 -88407 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 254-88 chr12 93481146 93481360 + 2 NA intron (NR_038161, intron 5 of 6) L2a|LINE|L2 13739 NR_038160 28977 Hs.199579 NM_014050 ENSG00000198015 MRPL42 HSPC204|L31MT|L42MT|MRP-L31|MRP-L42|MRP-S32|MRPL31|MRPS32|PTD007|RPML31|S32MT mitochondrial ribosomal protein L42 protein-coding 384-204 chr20 43168573 43168844 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 21198 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 341-43 chr1 214766260 214766552 + 2 NA Intergenic L1MB5|LINE|L1 163211 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 266-341 chr5 118701878 118702072 + 2 NA Intergenic Intergenic 105787 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 385-280 chr4 100345388 100345634 + 2 NA Intergenic Intergenic 49736 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 322-166 chr15 27175800 27175983 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -14572 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 524-106 chr2 17273036 17273360 + 2 NA Intergenic Intergenic 245242 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 344-104 chr12 34502761 34502978 + 2 NA Intergenic ALR/Alpha|Satellite|centr 480373 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 556-227 chr8 111471745 111472107 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 95287 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 310-203 chr18 54079145 54079356 + 2 NA Intergenic L1MC4|LINE|L1 143162 NR_002970 677819 Hs.655869 NR_002970 ENSG00000207233 SNORA37 ACA37 small nucleolar RNA, H/ACA box 37 snoRNA 290-95 chr12 1180396 1180562 + 2 NA intron (NR_027948, intron 7 of 19) intron (NR_027948, intron 7 of 19) 152731 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 324-482 chr7 10472792 10473027 + 2 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -229767 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 237-66 chr12 9138757 9138968 + 2 NA Intergenic L1MB1|LINE|L1 -22633 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 344-471 chr7 145458065 145458304 + 2 NA Intergenic L1ME3G|LINE|L1 -622131 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 327-38 chr10 22431591 22431832 + 2 NA Intergenic L1MD|LINE|L1 6218 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 280-17 chr1 94563198 94563436 + 2 NA Intergenic Intergenic 19615 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 380-248 chr3 90355742 90356063 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1248281 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 222-25 chr1 225301385 225301552 + 2 NA intron (NM_001367479, intron 56 of 85) intron (NM_001367479, intron 56 of 85) 126570 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 309-238 chr2 22876310 22876539 + 2 NA Intergenic L1MCc|LINE|L1 339945 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 373-268 chr3 161127765 161128135 + 2 NA Intergenic L1MB3|LINE|L1 -22578 NM_001349159 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 304-395 chr4 146699439 146699707 + 2 NA Intergenic Intergenic 60680 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 327-384 chr5 9351673 9351885 + 2 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -159554 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 385-416 chrX 64552079 64552430 + 2 NA Intergenic Intergenic -156802 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 247-107 chr13 109351611 109351834 + 2 NA Intergenic Intergenic -48974 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 343-324 chr22 46168559 46168887 + 2 NA intron (NM_001001928, intron 2 of 7) L1MD|LINE|L1 17928 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 490-89 chr14 66240946 66241367 + 2 NA Intergenic Intergenic -245215 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 542-124 chr20 56764076 56764444 + 2 NA Intergenic AluJr|SINE|Alu 134954 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 270-436 chrX 12051873 12052069 + 2 NA intron (NM_001368398, intron 3 of 18) intron (NM_001368398, intron 3 of 18) -13570 NM_001368402 9758 Hs.657507 NM_014728 ENSG00000169933 FRMPD4 MRX104|PDZD10|PDZK10 FERM and PDZ domain containing 4 protein-coding 295-130 chr14 65651306 65651568 + 2 NA intron (NM_004480, intron 5 of 9) L1MD2|LINE|L1 180335 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 414-175 chr2 201872162 201872489 + 2 NA exon (NM_001261436, exon 11 of 13) exon (NM_001261436, exon 11 of 13) 65746 NM_001366386 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 535-213 chr6 35258924 35259362 + 2 NA promoter-TSS (NM_003427) promoter-TSS (NM_003427) -592 NM_001292032 7629 Hs.388024 NM_003427 ENSG00000065029 ZNF76 D6S229E|ZNF523|Zfp523 zinc finger protein 76 protein-coding 200-194 chr4 96154150 96154323 + 2 NA Intergenic L1MC3|LINE|L1 -156467 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 378-47 chr10 12670211 12670522 + 2 NA intron (NM_001351032, intron 5 of 11) L1ME1|LINE|L1 -17169 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 470-158 chr20 46248831 46249206 + 2 NA intron (NM_021248, intron 2 of 11) intron (NM_021248, intron 2 of 11) 59480 NM_021248 64405 Hs.472861 NM_021248 ENSG00000149654 CDH22 C20orf25|dJ998H6.1 cadherin 22 protein-coding 321-183 chr14 84240342 84240621 + 2 NA Intergenic Intergenic -1031451 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 269-300 chr4 175868221 175868475 + 2 NA intron (NR_048571, intron 1 of 5) L1ME1|LINE|L1 -55234 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 404-276 chr6 117456507 117456861 + 2 NA Intergenic Intergenic -25920 NM_173674 285761 Hs.658304 NM_173674 ENSG00000164465 DCBLD1 dJ94G16.1 discoidin, CUB and LCCL domain containing 1 protein-coding 670-117 chr7 136838375 136838865 + 2 NA Intergenic L1MEc|LINE|L1 -30032 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 324-136 chr13 32976386 32976650 + 2 NA Intergenic Intergenic -39905 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 224-148 chr2 102352898 102353073 + 2 NA TTS (NM_016232) TTS (NM_016232) -2811 NM_001371419 196-116 chr2 22767402 22767507 + 2 NA Intergenic L1MEf|LINE|L1 230975 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 236-14 chr1 102114478 102114712 + 2 NA Intergenic Intergenic -117361 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 132-17 chr12 989999 990106 + 2 NA promoter-TSS (NM_001297419) promoter-TSS (NM_001297419) -11 NM_001297419 5893 Hs.410355 NM_134422 ENSG00000002016 RAD52 - RAD52 homolog, DNA repair protein protein-coding 331-448 chr6 25311065 25311387 + 2 NA intron (NM_001173977, intron 2 of 36) HAL1|LINE|L1 31852 NM_001173977 55604 Hs.649550 NM_017640 ENSG00000079691 CARMIL1 CARMIL|CARMIL1a|LRRC16|LRRC16A|dJ501N12.1|dJ501N12.5 capping protein regulator and myosin 1 linker 1 protein-coding 239-144 chr18 27968566 27968743 + 2 NA intron (NM_001308176, intron 13 of 14) intron (NM_001308176, intron 13 of 14) 67987 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 546-229 chr7 143117440 143117824 + 2 NA intron (NM_001130026, intron 9 of 10) LTR9A1|LTR|ERV1 -14445 NM_002652 5304 Hs.99949 NM_002652 ENSG00000159763 PIP GCDFP-15|GCDFP15|GPIP4 prolactin induced protein protein-coding 314-137 chr12 111005552 111005725 + 2 NA Intergenic Intergenic -28527 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 418-76 chr15 26331369 26331755 + 2 NA Intergenic L1M5|LINE|L1 215749 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 213-310 chrX 97859282 97859434 + 2 NA Intergenic Intergenic -294823 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 221-266 chr6 96285316 96285465 + 2 NA Intergenic LTR29|LTR|ERV1 -236416 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 256-2 chr1 19931136 19931336 + 2 NA Intergenic HERVK14C-int|LTR|ERVK -7619 NM_014589 30814 Hs.272372 NM_014589 ENSG00000188784 PLA2G2E GIIE sPLA2|sPLA2-IIE phospholipase A2 group IIE protein-coding 376-200 chr2 152230087 152230428 + 2 NA Intergenic Intergenic -54494 NM_005843 10254 Hs.17200 NM_005843 ENSG00000115145 STAM2 Hbp|STAM2A|STAM2B signal transducing adaptor molecule 2 protein-coding 360-390 chr5 179094520 179094739 + 2 NA Intergenic L1MA4|LINE|L1 34256 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 373-166 chr18 52492906 52493227 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 152869 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 370-333 chr4 35355593 35355866 + 2 NA Intergenic Intergenic 888210 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 682-32 chr14 75563431 75563926 + 2 NA Intergenic Intergenic -14942 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 293-67 chr11 84739864 84740037 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -19008 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 395-121 chr16 25449891 25450231 + 2 NA Intergenic L1MA9|LINE|L1 -192216 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 216-162 chr2 32993194 32993385 + 2 NA intron (NM_206943, intron 2 of 33) intron (NM_206943, intron 2 of 33) 46336 NM_206943 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 246-315 chr5 18130167 18130346 + 2 NA Intergenic Intergenic 322982 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 329-326 chr20 19293869 19294070 + 2 NA intron (NM_020689, intron 2 of 16) MER2B|DNA|TcMar-Tigger -9373 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 346-205 chr18 5174756 5174981 + 2 NA intron (NM_001330553, intron 1 of 1) intron (NM_001330553, intron 1 of 1) 22389 NM_001145194 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 242-199 chr2 152867977 152868133 + 2 NA Intergenic Intergenic 149418 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 392-143 chr2 41916477 41916848 + 2 NA Intergenic L1MEd|LINE|L1 17061 NR_110263 101929723 Hs.369330 NR_110262 ENSG00000234362 LINC01914 - long intergenic non-protein coding RNA 1914 ncRNA 488-279 chr8 134103967 134104316 + 2 NA Intergenic Intergenic 217645 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 214-68 chr11 97849715 97849902 + 2 NA Intergenic Intergenic -1171141 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 216-174 chr2 115093011 115093194 + 2 NA intron (NM_001178037, intron 1 of 25) intron (NM_001178037, intron 1 of 25) 28529 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 320-325 chr22 27321799 27322099 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 11298 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 211-224 chr5 13889236 13889363 + 2 NA intron (NM_001369, intron 17 of 78) intron (NM_001369, intron 17 of 78) 55181 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 312-216 chr19 24335294 24335527 + 2 NA Intergenic ALR/Alpha|Satellite|centr -171963 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 157-86 chr4 17790683 17790823 + 2 NA Intergenic Intergenic -9132 NM_015688 27146 Hs.744951 NM_015688 ENSG00000047662 FAM184B - family with sequence similarity 184 member B protein-coding 133-50 chr3 114090039 114090133 + 2 NA Intergenic Intergenic 33349 NM_001256836 79691 Hs.477162 NM_024638 ENSG00000151576 QTRT2 QTRTD1 queuine tRNA-ribosyltransferase accessory subunit 2 protein-coding 306-390 chr5 26887678 26887936 + 2 NA intron (NM_016279, intron 9 of 11) MLT1C|LTR|ERVL-MaLR 150779 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 259-214 chr2 132754744 132754994 + 2 NA intron (NM_207481, intron 14 of 17) intron (NM_207481, intron 14 of 17) -83343 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 378-166 chr16 87076979 87077294 + 2 NA Intergenic Intergenic 19352 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 198-114 chr2 7154949 7155114 + 2 NA Intergenic Intergenic -77151 NR_110252 101929452 NR_110252 ENSG00000223884 LOC101929452 - uncharacterized LOC101929452 ncRNA 313-70 chr10 128404747 128404959 + 2 NA Intergenic Intergenic 118903 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 326-71 chr10 69062849 69063013 + 2 NA Intergenic L2a|LINE|L2 -24672 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 257-229 chr2 230954272 230954505 + 2 NA Intergenic MamRep605|LTR?|LTR? -29146 NM_005683 9290 Hs.114545 NM_005683 ENSG00000135898 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 464-54 chr13 109855946 109856279 + 2 NA Intergenic Intergenic -69529 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 670-122 chr8 106330185 106330741 + 2 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 60285 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 796-33 chr3 28371284 28371914 + 2 NA intron (NM_001324170, intron 1 of 6) AluJr|SINE|Alu 22450 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 287-353 chr6 67385223 67385418 + 2 NA Intergenic L1MCb|LINE|L1 -670031 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 876-23 chr22 48670915 48671609 + 2 NA intron (NM_001082967, intron 2 of 3) intron (NM_001082967, intron 2 of 3) 94922 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 295-451 chr7 116473930 116474141 + 2 NA Intergenic L1PB1|LINE|L1 -25703 NM_001206747 858 Hs.212332 NM_001233 ENSG00000105971 CAV2 CAV caveolin 2 protein-coding 375-212 chr2 83420114 83420350 + 2 NA Intergenic L1PB4|LINE|L1 -102582 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 157-127 chr8 76982167 76982256 + 2 NA 3' UTR (NM_000318, exon 4 of 4) 3' UTR (NM_000318, exon 4 of 4) -15361 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 503-143 chr2 13538702 13539060 + 2 NA Intergenic Intergenic -531868 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 720-68 chr5 62695660 62696241 + 2 NA Intergenic AluSz|SINE|Alu 117131 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 347-443 chr6 138052350 138052597 + 2 NA Intergenic L1PB1|LINE|L1 54946 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 434-240 chr6 4335019 4335402 + 2 NA Intergenic L2|LINE|L2 -145181 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 338-362 chr3 193427034 193427227 + 2 NA intron (NM_032279, intron 25 of 29) L1PA5|LINE|L1 -48377 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 281-286 chr3 44566605 44566830 + 2 NA intron (NM_001288590, intron 3 of 5).2 AluJr|SINE|Alu 11524 NM_025169 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 276-392 chr6 8484943 8485145 + 2 NA intron (NR_038980, intron 2 of 4) intron (NR_038980, intron 2 of 4) 49421 NR_038979 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 366-315 chr4 82770776 82771088 + 2 NA intron (NM_001037582, intron 1 of 4) LTR16C|LTR|ERVL -17502 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 326-216 chr18 77244173 77244409 + 2 NA Intergenic AluJr|SINE|Alu -5557 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 207-7 chr1 64527816 64527993 + 2 NA intron (NM_001293274, intron 1 of 25) intron (NM_001293274, intron 1 of 25) 21990 NM_001293274 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 265-213 chr20 9770944 9771148 + 2 NA intron (NM_177990, intron 1 of 9) intron (NM_177990, intron 1 of 9) 68030 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 385-333 chr6 98144214 98144512 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 119832 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 189-59 chr15 23872546 23872704 + 2 NA Intergenic Intergenic -102522 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 276-77 chr11 31914260 31914474 + 2 NA Intergenic Intergenic 87800 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 332-207 chr17_GL000205v2_random 16122 16339 + 2 NA Intergenic CER|Satellite|Satellite 41736 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 276-117 chr12 119080168 119080357 + 2 NA intron (NM_194286, intron 1 of 12) MIR|SINE|MIR 96222 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 521-8 chr1 100669151 100669582 + 2 NA Intergenic L1M5|LINE|L1 -22362 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 212-149 chr2 49790742 49790927 + 2 NA Intergenic Intergenic 183369 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 403-107 chr14 87498870 87499220 + 2 NA Intergenic L1MEh|LINE|L1 156249 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 233-118 chr16 27955963 27956159 + 2 NA intron (NM_001109763, intron 2 of 6) HAL1|LINE|L1 -67904 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 515-189 chr4 113078054 113078544 + 2 NA intron (NM_001354232, intron 1 of 46) intron (NM_001354232, intron 1 of 46) -28564 NR_031641 100302188 NR_031641 ENSG00000283193 MIR1243 MIRN1243|hsa-mir-1243 microRNA 1243 ncRNA 308-389 chr5 89218823 89219003 + 2 NA intron (NR_136219, intron 7 of 9) L1MB7|LINE|L1 -314808 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 243-477 chr9 87053794 87053991 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -11766 NR_027471 440173 Hs.127361 NR_027471 ENSG00000269994 LOC440173 - uncharacterized LOC440173 ncRNA 353-170 chr16 5970291 5970542 + 2 NA Intergenic Intergenic -48608 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 315-211 chr19 51134845 51135140 + 2 NA intron (NM_001198558, intron 6 of 6) intron (NM_001198558, intron 6 of 6) -7309 NM_014385 27036 Hs.655393 NM_014385 ENSG00000168995 SIGLEC7 AIRM1|CD328|CDw328|D-siglec|QA79|SIGLEC-7|SIGLEC19P|SIGLECP2|p75|p75/AIRM1 sialic acid binding Ig like lectin 7 protein-coding 424-176 chr3 89361864 89362225 + 2 NA intron (NM_182644, intron 5 of 6) intron (NM_182644, intron 5 of 6) 254423 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 374-424 chrX 58439365 58439619 + 2 NA Intergenic ALR/Alpha|Satellite|centr -528859 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 298-170 chr17 69157392 69157671 + 2 NA intron (NM_080282, intron 28 of 39) L1M4a2|LINE|L1 -15636 NM_080284 23460 Hs.709514 NM_080284 ENSG00000154262 ABCA6 EST155051 ATP binding cassette subfamily A member 6 protein-coding 230-127 chr15 76943818 76943954 + 2 NA intron (NM_001271837, intron 5 of 7) intron (NM_001271837, intron 5 of 7) 12137 NM_001271837 5955 Hs.79088 NM_002902 ENSG00000117906 RCN2 E6BP|ERC-55|ERC55|TCBP49 reticulocalbin 2 protein-coding 161-80 chr5 5769346 5769476 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 346734 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 243-172 chr17 73632631 73632856 + 2 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 11702 NM_001144952 54549 Hs.435719 NM_019064 ENSG00000069188 SDK2 - sidekick cell adhesion molecule 2 protein-coding 356-233 chr2 42411277 42411572 + 2 NA Intergenic L1M5|LINE|L1 -42467 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 581-168 chr8 76568603 76569179 + 2 NA Intergenic Intergenic -112356 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 294-344 chr4 110435427 110435628 + 2 NA Intergenic L1PA17|LINE|L1 -40628 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 144-82 chr5 86548198 86548286 + 2 NA Intergenic Intergenic -69699 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 875-20 chr2 166737400 166738051 + 2 NA Intergenic L1PA11|LINE|L1 -150762 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 784-29 chr2 114224571 114225345 + 2 NA Intergenic Intergenic -217683 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 814-47 chr5 6849003 6849499 + 2 NA Intergenic Intergenic -21330 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 319-310 chr22 23191329 23191555 + 2 NA intron (NM_004327, intron 1 of 22) intron (NM_004327, intron 1 of 22) 10933 NM_004327 613 Hs.517461 NM_004327 ENSG00000186716 BCR ALL|BCR1|CML|D22S11|D22S662|PHL BCR activator of RhoGEF and GTPase protein-coding 254-234 chr22 36898355 36898567 + 2 NA Intergenic Intergenic -15167 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 346-256 chr2 134239872 134240215 + 2 NA intron (NM_001371457, intron 1 of 16) L4_A_Mam|LINE|RTE-X -14029 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 332-438 chr5 159574645 159574892 + 2 NA Intergenic Intergenic -108492 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 296-72 chr11 21079387 21079674 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 409944 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 400-179 chr2 164088374 164088684 + 2 NA Intergenic MER117|DNA|hAT-Charlie -352521 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 425-170 chr21 28715485 28715908 + 2 NA Intergenic L1PA16|LINE|L1 169671 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 224-134 chr2 18570550 18570696 + 2 NA intron (NM_001199104, intron 9 of 10) L1ME1|LINE|L1 -9970 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 471-186 chr4 38199312 38199653 + 2 NA Intergenic Intergenic 79528 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 264-53 chr10 75612619 75612810 + 2 NA intron (NM_001305581, intron 2 of 6) intron (NM_001305581, intron 2 of 6) -34795 NR_131178 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 610-161 chr7 46165259 46165710 + 2 NA Intergenic Intergenic -244212 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 337-413 chr4 150027914 150028087 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -50445 NM_001040260 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 307-152 chr14 84397419 84397652 + 2 NA Intergenic Intergenic -874397 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 129-29 chr19 29978855 29978954 + 2 NA intron (NM_001252641, intron 2 of 10) intron (NM_001252641, intron 2 of 10) 36665 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 407-344 chr9 78740053 78740353 + 2 NA Intergenic L1ME1|LINE|L1 405463 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 299-81 chr11 81620047 81620239 + 2 NA Intergenic Intergenic 270693 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 429-307 chr8 119301606 119301923 + 2 NA Intergenic L1MA8|LINE|L1 -23407 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 189-186 chr7 48259717 48259885 + 2 NA intron (NM_152701, intron 15 of 61) L1PA16|LINE|L1 88343 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 309-549 chr8 91258843 91259008 + 2 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 9606 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 470-181 chr3 113685751 113686132 + 2 NA intron (NM_001009899, intron 1 of 6) L1M1|LINE|L1 10701 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 389-106 chr14 80892314 80892687 + 2 NA intron (NM_152446, intron 8 of 24) L1MA9|LINE|L1 49238 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 612-82 chr21 27815503 27816010 + 2 NA Intergenic Intergenic 93377 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 242-108 chr14 72839195 72839342 + 2 NA intron (NM_001280542, intron 1 of 10) MIRc|SINE|MIR 53381 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 456-228 chr4 93873148 93873478 + 2 NA Intergenic MIRb|SINE|MIR 44560 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 361-76 chr11 70598628 70598946 + 2 NA intron (NM_133266, intron 2 of 10) L1ME3B|LINE|L1 -32307 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 221-277 chr7 35491721 35491895 + 2 NA Intergenic Intergenic 177953 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 307-35 chr1 240497066 240497304 + 2 NA intron (NM_022469, intron 1 of 1) MER5A|DNA|hAT-Charlie 114970 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 329-537 chr7 51977445 51977665 + 2 NA Intergenic Intergenic -584299 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 170-91 chr3 23265217 23265383 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 61973 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 402-165 chr2 126450494 126450876 + 2 NA Intergenic L1ME4c|LINE|L1 -205250 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 377-440 chrX 97601137 97601397 + 2 NA 3' UTR (NM_006729, exon 27 of 27) 3' UTR (NM_006729, exon 27 of 27) -36732 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 289-11 chr1 97356141 97356298 + 2 NA intron (NM_000110, intron 16 of 22) L1MA7|LINE|L1 260296 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 199-29 chr10 94025689 94025881 + 2 NA intron (NM_001288989, intron 1 of 32) L3|LINE|CR1 31854 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 485-167 chr21 18878097 18878462 + 2 NA Intergenic L1PA3|LINE|L1 -118467 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 598-148 chr8 137375806 137376320 + 2 NA Intergenic Intergenic 37525 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 363-371 chr5 126384886 126385221 + 2 NA intron (NM_001146319, intron 1 of 13) intron (NM_001146319, intron 1 of 13) 24933 NM_001146319 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 519-11 chr1 117719648 117720128 + 2 NA Intergenic L1PBa|LINE|L1 113840 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 748-10 chr1 224575882 224576367 + 2 NA intron (NR_136293, intron 5 of 9) Charlie23a|DNA|hAT-Charlie -40193 NR_136287 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 295-336 chr4 57690077 57690334 + 2 NA Intergenic Intergenic 264333 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 487-7 chr1 41719802 41720096 + 2 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 198973 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 329-548 chr7 113457961 113458238 + 2 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat -339517 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 369-262 chr3 34496954 34497198 + 2 NA Intergenic MIR|SINE|MIR 698446 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 195-84 chr17 65790619 65790754 + 2 NA intron (NM_001353129, intron 21 of 26) intron (NM_001353129, intron 21 of 26) 35765 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 425-9 chr1 162329942 162330203 + 2 NA intron (NM_014697, intron 4 of 9) intron (NM_014697, intron 4 of 9) -12474 NR_030283 693141 NR_030283 ENSG00000207729 MIR556 MIRN556|hsa-mir-556|mir-556 microRNA 556 ncRNA 403-72 chr12 37845079 37845384 + 2 NA Intergenic ALR/Alpha|Satellite|centr -471543 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 235-193 chr2 211175272 211175389 + 2 NA Intergenic L2b|LINE|L2 557759 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 326-552 chr8 128968642 128968961 + 2 NA Intergenic (ATATTTT)n|Simple_repeat|Simple_repeat -2800 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 320-374 chr3 197250647 197250845 + 2 NA intron (NM_001366216, intron 4 of 23) AluSx1|SINE|Alu 43202 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 711-10 chr11 25132976 25133501 + 2 NA Intergenic L1MB2|LINE|L1 636185 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 362-252 chr21 27049205 27049485 + 2 NA Intergenic LTR1A2|LTR|ERV1 -82257 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 394-36 chr10 27913180 27913461 + 2 NA intron (NM_001290021, intron 9 of 13) L1PA15|LINE|L1 68551 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 363-21 chr1 172806107 172806331 + 2 NA Intergenic MER101-int|LTR|ERV1 147116 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 130-76 chr6 114670934 114671014 + 2 NA Intergenic L1MC1|LINE|L1 -608097 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 128-40 chr3 8047089 8047197 + 2 NA Intergenic Intergenic -30836 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 269-266 chr4 33301051 33301215 + 2 NA Intergenic L2a|LINE|L2 738760 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 249-247 chr22 29089314 29089438 + 2 NA intron (NM_001039570, intron 1 of 8) L2a|LINE|L2 16341 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 241-145 chr17 61360193 61360386 + 2 NA intron (NM_001330413, intron 23 of 25) AluSx|SINE|Alu 7415 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 522-164 chr22 31370367 31370726 + 2 NA Intergenic MIRc|SINE|MIR 23787 NR_120386 54944 Hs.648259 NM_017834 LINC01521 - long intergenic non-protein coding RNA 1521 ncRNA 207-46 chr10 126424995 126425159 + 2 NA promoter-TSS (NR_148989) promoter-TSS (NR_148989) -853 NR_148989 728158 Hs.646701 NR_148989 LOC728158 - uncharacterized LOC728158 ncRNA 294-160 chr16 83347024 83347238 + 2 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -161215 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 385-18 chr1 212942248 212942490 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -8172 NM_001301056 79805 Hs.96885 NM_024749 ENSG00000143494 VASH2 - vasohibin 2 protein-coding 300-183 chr2 22387404 22387634 + 2 NA Intergenic Intergenic -148960 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 276-456 chr8 104258751 104259018 + 2 NA Intergenic L3|LINE|CR1 35549 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 249-465 chrX 62616122 62616328 + 2 NA Intergenic ALR/Alpha|Satellite|centr 735107 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 335-216 chr18 75133524 75133741 + 2 NA Intergenic Intergenic 71881 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 258-337 chr5 163932262 163932421 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie 426722 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 180-165 chr8 62413986 62414121 + 2 NA intron (NM_001304533, intron 1 of 6) Tigger19b|DNA|TcMar-Tigger 165199 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 416-73 chr11 81736379 81736756 + 2 NA Intergenic Intergenic 154269 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 276-285 chr3 20458486 20458744 + 2 NA Intergenic MER102c|DNA|hAT-Charlie 116147 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 296-66 chr10 120202328 120202621 + 2 NA Intergenic L1PA16|LINE|L1 152749 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 210-30 chr10 56820243 56820407 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -459052 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 422-10 chr1 74805145 74805475 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -71902 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 340-337 chr21 30504506 30504729 + 2 NA Intergenic Intergenic -2476 NM_181611 337972 Hs.553694 NM_181611 ENSG00000186977 KRTAP19-5 KAP19.5 keratin associated protein 19-5 protein-coding 411-35 chr10 83615809 83616140 + 2 NA Intergenic Intergenic 61115 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 276-241 chr2 150385542 150385775 + 2 NA Intergenic L1PB3|LINE|L1 102037 NM_001254738 390 Hs.6838 NM_005168 ENSG00000115963 RND3 ARHE|Rho8|RhoE|memB Rho family GTPase 3 protein-coding 351-58 chr11 20054513 20054828 + 2 NA intron (NM_182964, intron 18 of 37) intron (NM_182964, intron 18 of 37) -5367 NR_046672 100874014 Hs.557916 NR_046672 ENSG00000254453 NAV2-AS2 - NAV2 antisense RNA 2 ncRNA 495-96 chr18 69712851 69713327 + 2 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 234784 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 304-72 chr11 13804981 13805151 + 2 NA intron (NR_149108, intron 3 of 3) L1ME3B|LINE|L1 20680 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 224-153 chr2 118062190 118062339 + 2 NA Intergenic Intergenic -26154 NM_001321333 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 253-349 chr6 39103569 39103773 + 2 NA TTS (NM_018322) TTS (NM_018322) 11515 NM_001304793 55776 Hs.58382 NM_018322 ENSG00000112167 SAYSD1 C6orf64 SAYSVFN motif domain containing 1 protein-coding 255-36 chr10 82105819 82105997 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 127012 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 287-339 chr5 175306340 175306527 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 137749 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 630-148 chr9 29128439 29128979 + 2 NA intron (NM_001354574, intron 1 of 5) LOR1-int|LTR|ERV1 83590 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 530-210 chr5 155990217 155990591 + 2 NA Intergenic Intergenic -336353 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 298-489 chr9 25129490 25129722 + 2 NA Intergenic Intergenic 549252 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 407-253 chr5 113838480 113838775 + 2 NA Intergenic L1MA7|LINE|L1 324933 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 357-21 chr1 208398182 208398386 + 2 NA Intergenic AluJb|SINE|Alu -153900 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 790-44 chr6 63236355 63236898 + 2 NA Intergenic MER67D|LTR|ERV1 83351 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 242-3 chr1 32404740 32404938 + 2 NA Intergenic Intergenic -10398 NM_001143888 55108 Hs.353454 NM_018045 ENSG00000160058 BSDC1 - BSD domain containing 1 protein-coding 259-360 chr6 156924661 156924865 + 2 NA intron (NM_020732, intron 4 of 19) intron (NM_020732, intron 4 of 19) -111664 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 323-585 chr9 102618118 102618324 + 2 NA intron (NR_103830, intron 3 of 4) MLT1D|LTR|ERVL-MaLR 98584 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 388-265 chr5 3652108 3652326 + 2 NA Intergenic Intergenic 56385 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 329-176 chr15 27136781 27136997 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) 24430 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 324-367 chr3 155178510 155178702 + 2 NA intron (NM_000902, intron 22 of 22) L2c|LINE|L2 -62339 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 331-226 chr18 69096332 69096629 + 2 NA Intergenic Intergenic 298400 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 332-32 chr1 197254712 197254970 + 2 NA intron (NM_001257965, intron 1 of 14) intron (NM_001257965, intron 1 of 14) -13363 NM_001257966 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 612-18 chr10 75442050 75442398 + 2 NA intron (NM_001305581, intron 2 of 6) L1MA9|LINE|L1 10600 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 235-131 chr16 88304278 88304439 + 2 NA Intergenic Intergenic 110077 NR_110944 101928880 Hs.634835 NR_110944 ENSG00000260420 LINC02182 LA16c-444G7.2 long intergenic non-protein coding RNA 2182 ncRNA 246-397 chr8 79554609 79554805 + 2 NA Intergenic L1M4c|LINE|L1 -56410 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 360-245 chr2 173680212 173680487 + 2 NA Intergenic L1MC4|LINE|L1 283531 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 445-112 chr2 14621467 14621855 + 2 NA Intergenic Intergenic -11056 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 576-32 chr12 46434079 46434521 + 2 NA intron (NR_125381, intron 2 of 2) L1ME4a|LINE|L1 50193 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 498-254 chr7 89565330 89565740 + 2 NA Intergenic L1MA7|LINE|L1 -553865 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 383-153 chr17 33854617 33854814 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 302091 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 383-326 chr5 133835736 133835982 + 2 NA Intergenic L1MEg|LINE|L1 -77818 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 314-74 chr10 82495658 82495922 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -262870 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 240-253 chr2 239782128 239782302 + 2 NA intron (NR_037808, intron 2 of 2) BLACKJACK|DNA|hAT-Blackjack 19355 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 220-358 chr8 36588378 36588583 + 2 NA Intergenic Intergenic -195894 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 370-36 chr10 22892290 22892574 + 2 NA Intergenic L1PB3|LINE|L1 -35592 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 234-20 chr1 182992859 182993064 + 2 NA Intergenic L1MC4|LINE|L1 -30459 NM_002293 3915 Hs.609663 NM_002293 ENSG00000135862 LAMC1 LAMB2 laminin subunit gamma 1 protein-coding 212-221 chr3 118197524 118197637 + 2 NA Intergenic MER50|LTR|ERV1 -444188 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 222-254 chr3 178707683 178707848 + 2 NA intron (NM_001278911, intron 1 of 4) MER57E2|LTR|ERV1 148915 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 342-51 chr1 244507904 244508194 + 2 NA intron (NM_001130957, intron 7 of 21) L1MA4|LINE|L1 46678 NM_001242340 257044 Hs.459534 NM_173807 ENSG00000179397 CATSPERE C10orf101|C1orf101 catsper channel auxiliary subunit epsilon protein-coding 327-503 chr8 132535962 132536170 + 2 NA Intergenic Intergenic 25413 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 313-453 chr5 159346720 159347000 + 2 NA intron (NR_037889, intron 2 of 4) MER5B|DNA|hAT-Charlie 15342 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 523-128 chr2 46531782 46532187 + 2 NA intron (NM_001371282, intron 3 of 4) L1MB5|LINE|L1 -10506 NM_012249 23433 Hs.709193 NM_012249 ENSG00000119729 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 260-124 chr14 36356611 36356771 + 2 NA Intergenic L1M4b|LINE|L1 -36015 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 215-79 chr14 45995108 45995288 + 2 NA Intergenic Intergenic -68961 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 206-217 chr5 121709510 121709681 + 2 NA Intergenic L2a|LINE|L2 -142287 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 309-287 chr2 211291181 211291483 + 2 NA Intergenic Intergenic 673761 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 346-389 chr5 63567498 63567735 + 2 NA Intergenic MER52-int|LTR|ERV1 394676 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 235-414 chrX 121673826 121673978 + 2 NA Intergenic L1M3c|LINE|L1 302930 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 354-100 chr12 19238871 19239220 + 2 NA intron (NM_001256787, intron 1 of 25) intron (NM_001256787, intron 1 of 25) 33720 NM_001256787 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 435-95 chr16 63481741 63482007 + 2 NA Intergenic Intergenic -1445436 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 398-330 chr7 68010937 68011322 + 2 NA Intergenic Intergenic -9124 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 204-244 chr6 18436251 18436419 + 2 NA intron (NM_182757, intron 3 of 7) L1MC4a|LINE|L1 48985 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 420-186 chr3 84473767 84474103 + 2 NA Intergenic L1MA3|LINE|L1 395640 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 516-84 chr15 76283835 76284180 + 2 NA intron (NM_000126, intron 7 of 11) L2a|LINE|L2 -23855 NR_028510 7302 Hs.684881 NR_002721 TYRO3P - TYRO3P protein tyrosine kinase pseudogene pseudo 205-255 chr7 25062404 25062579 + 2 NA Intergenic Intergenic 62870 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 155-78 chr5 36860658 36860748 + 2 NA Intergenic Intergenic 15991 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 359-322 chr3 77747285 77747493 + 2 NA Intergenic L2c|LINE|L2 301574 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 216-77 chr12 83975452 83975654 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 937246 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 325-307 chr20 33027250 33027501 + 2 NA Intergenic Intergenic -4273 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 375-251 chr22 33040004 33040251 + 2 NA intron (NM_003490, intron 1 of 13) AluSc8|SINE|Alu 12417 NM_001369908 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 206-25 chr10 4329380 4329530 + 2 NA Intergenic Intergenic -54791 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 230-371 chr8 70086785 70086909 + 2 NA Intergenic L1MEc|LINE|L1 -15595 NM_024504 63978 Hs.736037 NM_024504 ENSG00000147596 PRDM14 PFM11 PR/SET domain 14 protein-coding 367-118 chr14 44485744 44486045 + 2 NA Intergenic MIR|SINE|MIR 21389 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 540-59 chr12 130296614 130297122 + 2 NA Intergenic L1PREC2|LINE|L1 -41019 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 305-96 chr11 74406636 74406846 + 2 NA Intergenic L1MB8|LINE|L1 7504 NR_039710 100616215 NR_039710 ENSG00000264402 MIR548AL - microRNA 548al ncRNA 421-281 chr7 46188657 46189006 + 2 NA Intergenic Intergenic -267559 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 292-342 chr5 23379199 23379394 + 2 NA Intergenic MIR|SINE|MIR -128313 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 169-41 chr14 97012661 97012814 + 2 NA Intergenic AluJr|SINE|Alu 69158 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 255-357 chr6 85768817 85768968 + 2 NA Intergenic Intergenic -90159 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 563-153 chr5 93289731 93290108 + 2 NA Intergenic Intergenic 281424 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 246-115 chr14 48846804 48846984 + 2 NA Intergenic L2a|LINE|L2 739486 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 238-17 chr1 158258856 158259007 + 2 NA TTS (NM_001320652) TTS (NM_001320652) 4507 NM_001763 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 374-392 chr8 107215552 107215913 + 2 NA Intergenic Intergenic 120783 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 414-350 chr9 35327689 35327939 + 2 NA intron (NM_006377, intron 10 of 38) intron (NM_006377, intron 10 of 38) -14082 NM_001371188 268-220 chr20 8270406 8270563 + 2 NA intron (NM_182734, intron 2 of 32) intron (NM_182734, intron 2 of 32) 21780 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 135-27 chr17 63037060 63037163 + 2 NA intron (NM_025185, intron 2 of 25) MER44D|DNA|TcMar-Tigger 70876 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 285-286 chr3 167676633 167676892 + 2 NA Intergenic L1MC4|LINE|L1 -18839 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 906-12 chr11 56489033 56489562 + 2 NA Intergenic HAL1|LINE|L1 2073 NM_001005282 219484 Hs.554522 NM_001005282 ENSG00000181371 OR5M8 OR11-194 olfactory receptor family 5 subfamily M member 8 protein-coding 339-149 chr14 42569025 42569263 + 2 NA Intergenic Intergenic 962288 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 570-107 chr2 76240723 76241155 + 2 NA Intergenic Intergenic -530024 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 358-30 chr1 240010634 240010866 + 2 NA intron (NR_036695, intron 1 of 1) MLT1F2|LTR|ERVL-MaLR 3226 NR_036695 645884 Hs.613280 NR_036695 RPS7P5 RPS7_2_183 ribosomal protein S7 pseudogene 5 pseudo 311-386 chr4 104759005 104759245 + 2 NA Intergenic Intergenic -264231 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 264-279 chr3 102207937 102208164 + 2 NA Intergenic AluJo|SINE|Alu 44345 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 298-405 chr6 92349214 92349506 + 2 NA Intergenic Intergenic -658932 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 310-412 chr5 90066825 90067115 + 2 NA Intergenic L1M5|LINE|L1 -50250 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 334-227 chr18 64783221 64783503 + 2 NA Intergenic L1PA10|LINE|L1 -523307 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 319-508 chr7 86803405 86803702 + 2 NA intron (NM_001363522, intron 3 of 4) intron (NM_001363522, intron 3 of 4) 159639 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 389-21 chr1 239680634 239680855 + 2 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) 38375 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 560-79 chr2 51560016 51560409 + 2 NA intron (NR_135237, intron 5 of 10) L1PA5|LINE|L1 527611 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 383-43 chr11 6482171 6482395 + 2 NA promoter-TSS (NM_001370411) promoter-TSS (NM_001370411) 782 NM_012192 26515 Hs.54943 NM_012192 ENSG00000132286 TIMM10B FXC1|TIM10B|Tim9b translocase of inner mitochondrial membrane 10B protein-coding 287-334 chr5 161493680 161493851 + 2 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 54359 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 352-311 chr3 27868637 27868872 + 2 NA Intergenic L1MA8|LINE|L1 -34618 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 324-363 chr3 121201023 121201193 + 2 NA intron (NM_001348343, intron 9 of 27) L1PA8|LINE|L1 151468 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 327-286 chr2 218078531 218078804 + 2 NA intron (NR_034176, intron 11 of 13) L1MB8|LINE|L1 9652 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 232-139 chr18 4932487 4932710 + 2 NA Intergenic Intergenic -148584 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 341-477 chr6 152078150 152078444 + 2 NA intron (NM_001328100, intron 6 of 6) intron (NM_001328100, intron 6 of 6) 89990 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 541-107 chr2 22609178 22609564 + 2 NA Intergenic MIR3|SINE|MIR 72892 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 195-65 chr14 72279820 72279937 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -236942 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 430-6 chr1 102772636 102773020 + 2 NA Intergenic L1MCa|LINE|L1 335668 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 302-493 chrX 50500104 50500331 + 2 NA Intergenic L1ME3B|LINE|L1 -29392 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 213-226 chr5 28609302 28609418 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -317510 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 353-390 chr4 137742366 137742676 + 2 NA Intergenic Intergenic 196790 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 240-407 chr8 31556741 31556928 + 2 NA Intergenic L1MB3|LINE|L1 -82918 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 282-362 chr5 12355442 12355714 + 2 NA Intergenic Intergenic -219279 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 520-211 chr4 45845605 45845964 + 2 NA Intergenic AluSc8|SINE|Alu 278270 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 262-435 chr8 118775195 118775380 + 2 NA Intergenic Intergenic -153324 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 387-264 chr4 172219925 172220201 + 2 NA intron (NM_001034845, intron 2 of 12) intron (NM_001034845, intron 2 of 12) -406456 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 147-42 chr2 67157978 67158118 + 2 NA intron (NR_038844, intron 4 of 7) intron (NR_038844, intron 4 of 7) -55360 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 478-122 chr18 58554904 58555251 + 2 NA intron (NM_052947, intron 4 of 12) THE1B|LTR|ERVL-MaLR -45543 NR_132963 106635543 NR_132963 SNORA108 - small nucleolar RNA, H/ACA box 108 snoRNA 282-420 chr7 33462527 33462727 + 2 NA intron (NM_001348037, intron 18 of 20) intron (NM_001348037, intron 18 of 20) 333063 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 538-188 chr5 15528006 15528421 + 2 NA intron (NM_001278317, intron 1 of 3) intron (NM_001278317, intron 1 of 3) 26775 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 257-244 chr21 9721529 9721691 + 2 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat 59421 NR_135513 105379514 Hs.543309 NR_135513 LOC105379514 - uncharacterized LOC105379514 ncRNA 117 chr1 74530693 74530754 + 2 NA intron (NM_015978, intron 23 of 24) intron (NM_015978, intron 23 of 24) -18109 NM_001364666 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 309-194 chr16 83027835 83028005 + 2 NA intron (NM_001220490, intron 2 of 12) L2b|LINE|L2 -37622 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 416-231 chr3 118397889 118398170 + 2 NA Intergenic L1M8|LINE|L1 -243739 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 547-147 chr3 159970248 159970681 + 2 NA intron (NR_108088, intron 9 of 9) L1ME4a|LINE|L1 -18371 NM_000882 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 412-105 chr16 8533506 8533823 + 2 NA intron (NR_110736, intron 3 of 3) intron (NR_110736, intron 3 of 3) 56174 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 248-6 chr1 56625231 56625439 + 2 NA Intergenic MIR|SINE|MIR -19979 NM_006252 5563 Hs.437039 NM_006252 ENSG00000162409 PRKAA2 AMPK|AMPK2|AMPKa2|PRKAA protein kinase AMP-activated catalytic subunit alpha 2 protein-coding 256-209 chr2 118556736 118556933 + 2 NA Intergenic L2a|LINE|L2 46132 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 161-13 chr10 80766623 80766717 + 2 NA Intergenic L1MDa|LINE|L1 116873 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 153-56 chr2 167170524 167170611 + 2 NA intron (NM_152381, intron 3 of 10) L1ME2|LINE|L1 -16805 NM_001199145 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 500-40 chr10 121422104 121422446 + 2 NA Intergenic Intergenic 109039 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 441-23 chr10 44135450 44135734 + 2 NA Intergenic L1MCb|LINE|L1 -157158 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 267-192 chr2 99316282 99316518 + 2 NA Intergenic AluJr4|SINE|Alu -11625 NM_001371380 372-192 chr17 68856365 68856557 + 2 NA Intergenic Intergenic 98931 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 538-21 chr1 219213784 219214200 + 2 NA Intergenic L1MEc|LINE|L1 39023 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 689-24 chr13 29043649 29044079 + 2 NA intron (NM_001366651, intron 4 of 14) L1MEf|LINE|L1 19407 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 327-44 chr10 51686732 51687003 + 2 NA intron (NM_001098512, intron 3 of 17) AluSx1|SINE|Alu 12728 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 352-10 chr1 62585632 62585908 + 2 NA intron (NM_001272002, intron 15 of 15) intron (NM_001272002, intron 15 of 15) -11750 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 209-207 chr3 129805035 129805220 + 2 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) -10515 NM_001349273 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 309-517 chr7 83528419 83528628 + 2 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 112908 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 214-195 chr22 25155804 25155954 + 2 NA intron (NM_001145206, intron 4 of 10) (TG)n|Simple_repeat|Simple_repeat -43187 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 367-62 chr10 109273486 109273745 + 2 NA Intergenic Intergenic 649631 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 295-135 chr14 73248825 73249008 + 2 NA intron (NM_001365907, intron 4 of 25) AluJb|SINE|Alu -2915 NR_135248 101928123 Hs.660593 NR_135248 LOC101928123 - uncharacterized LOC101928123 ncRNA 322-412 chr5 15731988 15732222 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -117103 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 362-368 chr5 179099330 179099582 + 2 NA Intergenic L1M4|LINE|L1 39083 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 669-51 chr2 80568636 80569246 + 2 NA intron (NM_001282599, intron 6 of 11) intron (NM_001282599, intron 6 of 11) 255562 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 743-57 chr3 191886247 191886814 + 2 NA Intergenic Intergenic -352100 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 313-167 chr15 76565312 76565478 + 2 NA intron (NR_148227, intron 23 of 32) L1PREC2|LINE|L1 -21252 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 317-286 chr21 35186363 35186576 + 2 NA Intergenic MIR|SINE|MIR -137171 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 205-291 chr8 144934258 144934409 + 2 NA intron (NM_006958, intron 2 of 2) intron (NM_006958, intron 2 of 2) 16547 NM_006958 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 836-39 chr3 117860307 117860910 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -169683 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 263-187 chr2 22222065 22222290 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -314302 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 312-110 chr12 77143631 77143937 + 2 NA Intergenic L1MB2|LINE|L1 -78215 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 491-12 chr10 12628249 12628674 + 2 NA intron (NM_001351032, intron 4 of 11) L1MC2|LINE|L1 24736 NR_039701 100616320 NR_039701 ENSG00000283699 MIR4481 - microRNA 4481 ncRNA 372-151 chr14 72845835 72846077 + 2 NA intron (NM_001280542, intron 1 of 10) intron (NM_001280542, intron 1 of 10) 46693 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 376-69 chr11 42562970 42563313 + 2 NA Intergenic L1MB8|LINE|L1 -309451 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 331-391 chr4 106440552 106440758 + 2 NA intron (NR_147150, intron 2 of 3) intron (NR_147150, intron 2 of 3) 7031 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 201-151 chr3 31323543 31323694 + 2 NA Intergenic Intergenic -161831 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 247-348 chr5 162543328 162543533 + 2 NA Intergenic Intergenic 475788 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 264-439 chr9 32355108 32355355 + 2 NA Intergenic Intergenic -29372 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 548-93 chr17 48205189 48205728 + 2 NA intron (NM_001075099, intron 4 of 12) A-rich|Low_complexity|Low_complexity -48947 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 343-28 chr1 165101004 165101226 + 2 NA Intergenic Intergenic 255126 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 188-81 chr18 541908 542023 + 2 NA Intergenic Intergenic -26671 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 353-226 chr19 37934772 37935088 + 2 NA intron (NM_015073, intron 1 of 21) L1P4|LINE|L1 27722 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 511-183 chr3 187599027 187599436 + 2 NA Intergenic Intergenic 71163 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 205-295 chr9 73554140 73554300 + 2 NA Intergenic Intergenic 402355 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 265-181 chr2 69261264 69261454 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 125868 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 214-125 chr17 34677962 34678109 + 2 NA Intergenic Intergenic 97286 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 280-23 chr1 158321572 158321810 + 2 NA Intergenic L1M1|LINE|L1 9840 NM_001764 910 Hs.1310 NM_001764 ENSG00000158485 CD1B CD1|CD1A|R1 CD1b molecule protein-coding 427-4 chr1 57384194 57384539 + 2 NA intron (NM_001353980, intron 4 of 5) L1MB2|LINE|L1 38746 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 266-412 chr8 55391080 55391325 + 2 NA intron (NM_052898, intron 2 of 2) L1MC5a|LINE|L1 64119 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 310-164 chr16 8610312 8610497 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -11294 NR_134608 79091 Hs.306380 NM_024109 ENSG00000067365 METTL22 C16orf68 methyltransferase like 22 protein-coding 252-228 chr20 31260869 31261049 + 2 NA Intergenic Intergenic 3295 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 427-279 chr9 83176280 83176616 + 2 NA Intergenic L1MB8|LINE|L1 90820 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 287-42 chr10 10636112 10636297 + 2 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 158710 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 183-62 chr17 65264607 65264757 + 2 NA Intergenic L1ME3B|LINE|L1 127312 NM_003835 8787 Hs.664380 NM_003835 ENSG00000108370 RGS9 PERRS|RGS9L regulator of G protein signaling 9 protein-coding 221-102 chr16 50723644 50723841 + 2 NA intron (NR_163434, intron 10 of 12) MIR|SINE|MIR -18308 NM_015247 1540 Hs.578973 NM_015247 ENSG00000083799 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 CYLD lysine 63 deubiquitinase protein-coding 410-98 chr15 59822879 59823216 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -133727 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 370-40 chr10 37417399 37417695 + 2 NA Intergenic Intergenic 108361 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 348-200 chr18 37157023 37157344 + 2 NA intron (NR_136303, intron 8 of 13) intron (NR_136303, intron 8 of 13) -117277 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 230-9 chr1 75696841 75697037 + 2 NA Intergenic Intergenic -27408 NM_001286043 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase medium chain protein-coding 329-60 chr10 67287360 67287669 + 2 NA intron (NM_001127384, intron 5 of 17) MamGypsy2-I|LTR|Gypsy 115896 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 526-252 chr8 127276026 127276356 + 2 NA intron (NR_117099, intron 1 of 3) MIRb|SINE|MIR 31554 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 519-70 chr16 3333918 3334320 + 2 NA Intergenic AluJb|SINE|Alu -21770 NM_012368 4993 Hs.258574 NM_012368 ENSG00000168158 OR2C1 OLFmf3|OR2C2P olfactory receptor family 2 subfamily C member 1 protein-coding 421-190 chr3 106423408 106423693 + 2 NA Intergenic Intergenic -554149 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 283-160 chr16 35118109 35118350 + 2 NA Intergenic Intergenic 52162 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 354-94 chr11 123949995 123950330 + 2 NA Intergenic Intergenic -6324 NM_001005187 219874 Hs.553638 NM_001005187 ENSG00000181499 OR6T1 OR11-277 olfactory receptor family 6 subfamily T member 1 protein-coding 394-53 chr10 114352694 114353068 + 2 NA intron (NM_001001936, intron 1 of 18) intron (NM_001001936, intron 1 of 18) 51621 NM_001001936 84632 Hs.501106 NM_032550 ENSG00000169129 AFAP1L2 CTB-1144G6.4|KIAA1914|XB130 actin filament associated protein 1 like 2 protein-coding 497-102 chr18 52396902 52397212 + 2 NA intron (NM_005215, intron 1 of 28) intron (NM_005215, intron 1 of 28) 56860 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 317-97 chr11 130258123 130258339 + 2 NA intron (NM_001370222, intron 1 of 4) intron (NM_001370222, intron 1 of 4) 56481 NM_014155 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 921-10 chr2 14624204 14624843 + 2 NA Intergenic Intergenic -8194 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 639-77 chr22 50384670 50385138 + 2 NA intron (NM_001242899, intron 2 of 22) AluJr|SINE|Alu -22538 NR_162128 113218480 NR_162128 MIR12114 - microRNA 12114 ncRNA 306-207 chr18 62003952 62004226 + 2 NA Intergenic LTR33C|LTR|ERVL -111082 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 490-154 chr2 128884276 128884671 + 2 NA Intergenic AluJb|SINE|Alu 19873 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 253-440 chrX 67274690 67274861 + 2 NA Intergenic L1MA1|LINE|L1 -269246 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 473-100 chr16 6216749 6217123 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 197233 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 522-117 chr19 29170116 29170571 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 42808 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 217-79 chr11 97417687 97417851 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 909344 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 268-257 chr3 164172368 164172614 + 2 NA promoter-TSS (NR_031665) promoter-TSS (NR_031665) -935 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 450-142 chr2 83557265 83557585 + 2 NA Intergenic L1PA10|LINE|L1 34611 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 136-24 chr14 85652741 85652838 + 2 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 119440 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 243-16 chr1 105108391 105108590 + 2 NA Intergenic L1MEf|LINE|L1 510445 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 256-24 chr1 182563588 182563784 + 2 NA Intergenic Ricksha|DNA|MULE-MuDR 25570 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 286-21 chr1 166015905 166016176 + 2 NA Intergenic MamRep605|LTR?|LTR? 108119 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 407-90 chr15 58302646 58302976 + 2 NA Intergenic Intergenic -129180 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 332-486 chr7 54655972 54656230 + 2 NA Intergenic Intergenic 99131 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 175-116 chr4 104889399 104889533 + 2 NA Intergenic Intergenic -256409 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 347-179 chr17 78463879 78464132 + 2 NA intron (NM_173628, intron 56 of 80) intron (NM_173628, intron 56 of 80) -20905 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 220-126 chr16 81997789 81997956 + 2 NA 3' UTR (NM_145168, exon 3 of 3) 3' UTR (NM_145168, exon 3 of 3) 13598 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 358-376 chr5 94233681 94233876 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -122079 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 533-209 chr7 4325073 4325587 + 2 NA Intergenic AluSz|SINE|Alu -190493 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 282-278 chr22 33824788 33824985 + 2 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 95542 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 361-349 chr5 16650674 16650870 + 2 NA Intergenic Helitron3Na_Mam|RC|Helitron -33714 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 238-29 chr1 242503663 242503845 + 2 NA intron (NM_001320272, intron 2 of 10) MLT1L|LTR|ERVL-MaLR 20942 NM_152666 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 274-216 chr2 114331793 114332012 + 2 NA Intergenic L1ME3B|LINE|L1 -110739 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 325-188 chr16 6476673 6476991 + 2 NA intron (NM_018723, intron 2 of 15) Tigger1|DNA|TcMar-Tigger -296977 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 303-141 chr15 58324728 58324974 + 2 NA Intergenic L1PA16|LINE|L1 -107140 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 321-166 chr14 47563806 47564052 + 2 NA intron (NM_001113498, intron 1 of 16) L1PA15|LINE|L1 111025 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 291-296 chr3 141123154 141123373 + 2 NA intron (NM_080862, intron 2 of 2) L1ME3F|LINE|L1 71916 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 349-293 chr20 42458964 42459218 + 2 NA intron (NM_133170, intron 8 of 31) L2a|LINE|L2 -226392 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 242-309 chr5 84572516 84572721 + 2 NA Intergenic MER21B|LTR|ERVL -187738 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 217-145 chr16 80299638 80299814 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -241008 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 442-66 chr13 86688563 86688836 + 2 NA Intergenic Intergenic -223221 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 192-20 chr10 43295516 43295695 + 2 NA Intergenic Intergenic -28540 NM_145313 221002 Hs.125293 NM_145313 ENSG00000198915 RASGEF1A CG4853 RasGEF domain family member 1A protein-coding 385-76 chr12 128877323 128877628 + 2 NA intron (NM_144669, intron 2 of 7) intron (NM_144669, intron 2 of 7) 23997 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 380-136 chr15 66987610 66987884 + 2 NA intron (NR_135686, intron 2 of 5) MER53|DNA|hAT -31232 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 366-448 chr8 109549131 109549410 + 2 NA intron (NM_001278938, intron 1 of 6) L1ME1|LINE|L1 8644 NM_001278938 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 237-148 chr18 22700436 22700594 + 2 NA Intergenic L1MA5A|LINE|L1 86322 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 258-415 chr8 138094391 138094614 + 2 NA Intergenic L1MEc|LINE|L1 -10957 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 367-348 chr5 26809079 26809362 + 2 NA Intergenic Intergenic 229366 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 436-3 chr1 38689494 38689833 + 2 NA Intergenic L1ME4a|LINE|L1 170109 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 311-192 chr17 11472412 11472626 + 2 NA intron (NM_001173462, intron 3 of 4) L1MC1|LINE|L1 -125951 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 209-8 chr1 86670016 86670175 + 2 NA intron (NR_135837, intron 4 of 4) L1MA3|LINE|L1 34398 NR_135838 105378828 Hs.175285 NR_135837 ENSG00000261737 CLCA4-AS1 - CLCA4 antisense RNA 1 ncRNA 244-391 chrX 46343697 46343882 + 2 NA Intergenic L1MD1|LINE|L1 -16115 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 331-95 chr11 81114530 81114805 + 2 NA Intergenic L2a|LINE|L2 -351864 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 249-304 chr4 86414790 86414972 + 2 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) 38314 NM_002753 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 282-332 chr4 36007794 36007994 + 2 NA intron (NR_146893, intron 36 of 36) L1PA16|LINE|L1 236045 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 457-50 chr12 46427333 46427700 + 2 NA intron (NR_125381, intron 2 of 2) L1PA17|LINE|L1 43409 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 559-52 chr14 101210577 101210954 + 2 NA Intergenic L1MB5|LINE|L1 89909 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 391-305 chr6 53371509 53371726 + 2 NA Intergenic Intergenic -22438 NM_001242831 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 312-149 chr14 61104349 61104643 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -122806 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 405-165 chr2 175430481 175430773 + 2 NA Intergenic Intergenic -248917 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 139-52 chr3 22760277 22760389 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 442245 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 265-184 chr2 76536268 76536456 + 2 NA Intergenic Intergenic -449603 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 572-26 chr11 58471004 58471564 + 2 NA Intergenic AluSc|SINE|Alu -31111 NM_001004733 390191 Hs.553754 NM_001004733 ENSG00000172362 OR5B12 OR11-241|OR5B12P|OR5B16|OST743 olfactory receptor family 5 subfamily B member 12 protein-coding 346-318 chr3 82781321 82781576 + 2 NA Intergenic Intergenic 795306 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 411-27 chr10 51243936 51244160 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) -55525 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 364-289 chr3 162734290 162734515 + 2 NA Intergenic Intergenic 568899 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 217-76 chr11 91200171 91200367 + 2 NA Intergenic Intergenic -331067 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 195-253 chr9 35181119 35181266 + 2 NA intron (NM_006377, intron 1 of 38) intron (NM_006377, intron 1 of 38) 19183 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 257-234 chr20 13691288 13691453 + 2 NA Intergenic Intergenic -52434 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 269-244 chr3 4961710 4961888 + 2 NA intron (NR_125915, intron 1 of 3) L1ME2|LINE|L1 -17638 NM_003670 8553 Hs.744856 NM_003670 ENSG00000134107 BHLHE40 BHLHB2|Clast5|DEC1|HLHB2|SHARP-2|SHARP2|STRA13|Stra14 basic helix-loop-helix family member e40 protein-coding 427-134 chr2 230740015 230740327 + 2 NA intron (NM_001130849, intron 1 of 8) L3|LINE|CR1 26623 NM_001130850 51719 Hs.603930 NM_016289 ENSG00000135932 CAB39 CGI-66|MO25 calcium binding protein 39 protein-coding 346-247 chr2 89777003 89777285 + 2 NA Intergenic Intergenic -139237 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 261-103 chr14 51515287 51515504 + 2 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 26267 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 420-43 chr10 95322937 95323296 + 2 NA intron (NM_001034956, intron 24 of 27) intron (NM_001034956, intron 24 of 27) -32113 NM_020992 9124 Hs.368525 NM_020992 ENSG00000107438 PDLIM1 CLIM1|CLP-36|CLP36|HEL-S-112|hCLIM1 PDZ and LIM domain 1 protein-coding 322-240 chr2 46710811 46711109 + 2 NA intron (NM_144949, intron 1 of 1) L1ME2|LINE|L1 11665 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 268-425 chr8 138268948 138269152 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -185505 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 456-214 chr3 191972343 191972625 + 2 NA Intergenic L1ME3|LINE|L1 -266146 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 632-26 chr14 46215238 46215746 + 2 NA intron (NR_102702, intron 3 of 3) L1ME2|LINE|L1 151333 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 279-390 chr7 43088128 43088343 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -24412 NM_001287059 23072 Hs.164453 NM_015052 ENSG00000002746 HECW1 NEDL1 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1 protein-coding 195-221 chr7 8230697 8230821 + 2 NA intron (NM_001350836, intron 3 of 14) L3|LINE|CR1 31293 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 250-212 chr2 101172650 101172798 + 2 NA Intergenic AluJb|SINE|Alu 21064 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 557-165 chr5 155195509 155195949 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 181974 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 117-16 chr2 14265400 14265494 + 2 NA intron (NR_103814, intron 2 of 3) intron (NR_103814, intron 2 of 3) 135511 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 271-198 chr2 67013837 67014080 + 2 NA Intergenic MIR|SINE|MIR -72488 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 284-183 chr19 37198883 37199115 + 2 NA intron (NM_152279, intron 2 of 4) intron (NM_152279, intron 2 of 4) 11537 NM_152279 92285 Hs.390568 NM_152279 ENSG00000245680 ZNF585B SZFP41 zinc finger protein 585B protein-coding 541-254 chr9 75313080 75313455 + 2 NA Intergenic MER11C|LTR|ERVK 224753 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 164-69 chr21 30704735 30704825 + 2 NA Intergenic L1PA15|LINE|L1 13997 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 514-61 chr12 60432984 60433335 + 2 NA Intergenic Intergenic 743789 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 191-163 chr5 18425101 18425257 + 2 NA Intergenic L1MC1|LINE|L1 617905 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 330-442 chr5 148535828 148536112 + 2 NA intron (NM_001040172, intron 3 of 5) L1PA14|LINE|L1 101091 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 237-56 chr11 50039846 50040020 + 2 NA Intergenic MER66-int|LTR|ERV1 7059 NR_160275 403257 Hs.554533 NM_001005513 ENSG00000260811 OR4C45 - olfactory receptor family 4 subfamily C member 45 (gene/pseudogene) protein-coding 374-26 chr10 8475489 8475683 + 2 NA Intergenic LTR105_Mam|LTR|ERVL 118805 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 347-414 chr5 143037971 143038250 + 2 NA intron (NR_146198, intron 13 of 22) intron (NR_146198, intron 13 of 22) -154390 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 260-405 chr7 36741760 36741943 + 2 NA Intergenic L2a|LINE|L2 -17302 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 229-303 chr5 73659132 73659251 + 2 NA intron (NM_001177693, intron 1 of 35) intron (NM_001177693, intron 1 of 35) 33033 NM_001177693 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 352-481 chr7 9704680 9704914 + 2 NA Intergenic Intergenic 70527 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 491-151 chr21 23573020 23573415 + 2 NA Intergenic Intergenic -188382 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 271-269 chr3 76557344 76557577 + 2 NA Intergenic HAL1ME|LINE|L1 -482639 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 421-127 chr2 8039354 8039751 + 2 NA intron (NR_034135, intron 8 of 8) intron (NR_034135, intron 8 of 8) -62738 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 284-313 chr5 28721410 28721613 + 2 NA Intergenic Intergenic -205359 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 286-40 chr10 44334829 44335089 + 2 NA Intergenic Intergenic 42209 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 234-10 chr1 92216138 92216295 + 2 NA Intergenic L2-3_Crp|LINE|L2 -1699 NM_001012425 388649 Hs.558823 NM_001012425 ENSG00000203910 C1orf146 - chromosome 1 open reading frame 146 protein-coding 318-177 chr14 84551489 84551682 + 2 NA Intergenic Intergenic -720347 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 186-55 chr15 27727274 27727434 + 2 NA Intergenic Intergenic 371961 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 324-477 chr6 159184060 159184273 + 2 NA intron (NM_032532, intron 1 of 22) MIRb|SINE|MIR -14159 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 511-110 chr2 14322678 14323128 + 2 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 78055 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 272-346 chr5 53844901 53845130 + 2 NA Intergenic L1PA3|LINE|L1 -25333 NR_147167 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 498-126 chr2 104023914 104024171 + 2 NA Intergenic Intergenic 384290 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 218-117 chr16 52762001 52762174 + 2 NA Intergenic Intergenic -155112 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 313-271 chr2 112468681 112468897 + 2 NA Intergenic L1MA4|LINE|L1 -13367 NM_153712 150465 Hs.358997 NM_153712 ENSG00000114999 TTL - tubulin tyrosine ligase protein-coding 459-293 chr8 54965286 54965587 + 2 NA Intergenic Intergenic -136592 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 321-50 chr10 25051768 25051963 + 2 NA intron (NM_001270383, intron 2 of 5) intron (NM_001270383, intron 2 of 5) 10414 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 291-497 chr9 99705360 99705592 + 2 NA intron (NR_109802, intron 3 of 6) intron (NR_109802, intron 3 of 6) 114413 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 423-299 chr8 117484891 117485113 + 2 NA Intergenic L1PA16|LINE|L1 -35711 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 333-492 chr6 19493632 19493873 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 43931 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 226-40 chr10 53487939 53488073 + 2 NA Intergenic Intergenic -716306 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 413-138 chr2 67823497 67823791 + 2 NA intron (NR_110271, intron 2 of 2) intron (NR_110271, intron 2 of 2) 1918 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 341-547 chr8 136389453 136389736 + 2 NA Intergenic Intergenic -141204 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 366-416 chr7 87277413 87277770 + 2 NA Intergenic L1MA4A|LINE|L1 -57004 NR_138030 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 355-458 chr7 37993988 37994274 + 2 NA Intergenic L1ME3A|LINE|L1 72812 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 526-205 chr5 125095487 125095871 + 2 NA intron (NR_109882, intron 2 of 5) Tigger1|DNA|TcMar-Tigger 58848 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 306-335 chr3 179257043 179257291 + 2 NA intron (NM_171828, intron 1 of 3) AluJo|SINE|Alu 2724 NM_171829 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 388-243 chr4 9842550 9842829 + 2 NA intron (NM_001001290, intron 11 of 12) intron (NM_001001290, intron 11 of 12) 61055 NM_000798 1816 Hs.380681 NM_000798 ENSG00000169676 DRD5 DBDR|DRD1B|DRD1L2 dopamine receptor D5 protein-coding 140-62 chr6 62277741 62277834 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 8438 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 389-380 chr9 82258063 82258302 + 2 NA Intergenic Intergenic 269410 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 223-103 chr15 72007251 72007378 + 2 NA intron (NM_006901, intron 8 of 41) intron (NM_006901, intron 8 of 41) -106944 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 274-209 chr2 79589305 79589537 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 59938 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 368-173 chr16 13745395 13745696 + 2 NA Intergenic L2b|LINE|L2 -174612 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 219-123 chr16 26692242 26692439 + 2 NA Intergenic L2a|LINE|L2 -374587 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 447-302 chrX 65217086 65217471 + 2 NA Intergenic L1M1|LINE|L1 -182537 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 199-215 chr6 65450475 65450622 + 2 NA intron (NM_198283, intron 4 of 9) LTR16A|LTR|ERVL 129256 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 307-414 chr6 27859579 27859769 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -5655 NM_003511 8332 Hs.233568 NM_003511 ENSG00000276903 HIST1H2AL H2A.i|H2A/i|H2AFI|dJ193B12.9 histone cluster 1 H2A family member l protein-coding 306-130 chr13 82042338 82042502 + 2 NA Intergenic L1PA15-16|LINE|L1 -815437 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 453-244 chr7 16941156 16941554 + 2 NA Intergenic Intergenic -59372 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 214-70 chr11 102255495 102255645 + 2 NA Intergenic Intergenic -61914 NM_001165 330 Hs.127799 NM_001165 ENSG00000023445 BIRC3 AIP1|API2|CIAP2|HAIP1|HIAP1|IAP-1|MALT2|MIHC|RNF49|c-IAP2 baculoviral IAP repeat containing 3 protein-coding 588-20 chr11 42214756 42215201 + 2 NA intron (NR_038309, intron 4 of 5) intron (NR_038309, intron 4 of 5) 38712 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 318-125 chr12 2395531 2395708 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 125843 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 242-63 chr11 101045099 101045295 + 2 NA intron (NR_073143, intron 4 of 5) intron (NR_073143, intron 4 of 5) 83866 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 374-155 chr18 37091905 37092210 + 2 NA intron (NR_136303, intron 8 of 13) L1MA4A|LINE|L1 -168243 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 312-437 chr5 166656444 166656725 + 2 NA Intergenic Intergenic 269786 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 376-84 chr12 56910763 56911020 + 2 NA Intergenic Intergenic 23517 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 393-245 chr4 95973585 95973952 + 2 NA Intergenic Intergenic 133675 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 401-279 chr6 35700983 35701287 + 2 NA intron (NM_001145775, intron 2 of 11) MER53|DNA|hAT -12193 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 399-149 chr2 80596751 80597017 + 2 NA intron (NM_001282599, intron 9 of 11) L1P3|LINE|L1 283505 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 374-202 chr2 139252437 139252771 + 2 NA Intergenic HAL1b|LINE|L1 355280 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 180-182 chr9 123709303 123709447 + 2 NA intron (NM_001352968, intron 4 of 18) intron (NM_001352968, intron 4 of 18) 220751 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 325-30 chr1 181217889 181218122 + 2 NA Intergenic Intergenic -18383 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 335-178 chr15 93682128 93682299 + 2 NA Intergenic Intergenic -174347 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 526-112 chr2 4166266 4166623 + 2 NA Intergenic L1MC1|LINE|L1 192283 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 356-476 chr8 83601019 83601279 + 2 NA Intergenic L1MA3|LINE|L1 197391 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 367-349 chr5 30283705 30283961 + 2 NA Intergenic Intergenic 403273 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 231-40 chr10 81189110 81189275 + 2 NA Intergenic MIR|SINE|MIR 539395 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 181-87 chr21 36694121 36694252 + 2 NA Intergenic Intergenic -4929 NM_005069 6493 Hs.146186 NM_005069 ENSG00000159263 SIM2 HMC13F06|HMC29C01|SIM|bHLHe15 SIM bHLH transcription factor 2 protein-coding 304-281 chr2 171056379 171056635 + 2 NA exon (NM_001136554, exon 6 of 21) exon (NM_001136554, exon 6 of 21) 10466 NM_001136555 9874 Hs.744917 NM_012290 ENSG00000198586 TLK1 PKU-beta tousled like kinase 1 protein-coding 513-232 chr5 130982661 130983066 + 2 NA Intergenic L1MB4|LINE|L1 182393 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 207-117 chr19 27721292 27721447 + 2 NA Intergenic ALR/Alpha|Satellite|centr -72062 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 323-36 chr1 235218034 235218280 + 2 NA intron (NR_135074, intron 16 of 24) intron (NR_135074, intron 16 of 24) -28041 NR_039908 100616224 NR_039908 ENSG00000263439 MIR4753 mir-4753 microRNA 4753 ncRNA 507-117 chr2 29381452 29381841 + 2 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) 93731 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 337-463 chr5 133887245 133887522 + 2 NA Intergenic Intergenic -26294 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 229-313 chr5 99269657 99269843 + 2 NA Intergenic L1M3d|LINE|L1 -264240 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 144-78 chr5 45018366 45018456 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 209464 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 252-349 chr5 131184936 131185088 + 2 NA intron (NM_001293735, intron 3 of 3) L2|LINE|L2 14068 NM_001293735 90624 Hs.115467 NM_181705 ENSG00000186687 LYRM7 C5orf31|MC3DN8|MZM1L LYR motif containing 7 protein-coding 339-82 chr10 131015702 131015885 + 2 NA Intergenic Intergenic -53125 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 533-35 chr12 19935300 19935680 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -79195 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 288-121 chr14 77303208 77303442 + 2 NA intron (NM_013382, intron 4 of 20) intron (NM_013382, intron 4 of 20) 17557 NM_013382 29954 Hs.132989 NM_013382 ENSG00000009830 POMT2 LGMD2N|LGMDR14|MDDGA2|MDDGB2|MDDGC2 protein O-mannosyltransferase 2 protein-coding 308-374 chr5 23215375 23215601 + 2 NA Intergenic Intergenic -292121 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 137-57 chr20 49142406 49142514 + 2 NA intron (NM_004602, intron 5 of 13) Charlie15b|DNA|hAT-Charlie 45910 NM_001322930 6780 Hs.596704 NM_004602 ENSG00000124214 STAU1 PPP1R150|STAU staufen double-stranded RNA binding protein 1 protein-coding 574-24 chr11 81055396 81055833 + 2 NA Intergenic MIR|SINE|MIR -292811 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 247-18 chr1 158622285 158622433 + 2 NA intron (NM_003126, intron 43 of 51) intron (NM_003126, intron 43 of 51) 15920 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 180-108 chr3 94885335 94885488 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 -52852 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 574-182 chr8 84832436 84832941 + 2 NA intron (NM_001287244, intron 3 of 7) intron (NM_001287244, intron 3 of 7) 126761 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 395-347 chr8 134784259 134784584 + 2 NA Intergenic Intergenic 16186 NR_029666 407030 NR_029666 ENSG00000207582 MIR30B MIRN30B|mir-30b microRNA 30b ncRNA 225-390 chr9 77860275 77860441 + 2 NA intron (NM_002072, intron 2 of 6) intron (NM_002072, intron 2 of 6) 171453 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 216-92 chr14 44476885 44477030 + 2 NA Intergenic Intergenic 30326 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 413-114 chr17 70981286 70981541 + 2 NA Intergenic Intergenic 220766 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 337-296 chr2 213921790 213922036 + 2 NA intron (NR_047660, intron 10 of 14) L1PA14|LINE|L1 163846 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 381-128 chr16 77693103 77693366 + 2 NA Intergenic Intergenic -29258 NM_001243657 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 245-149 chr15 100065242 100065443 + 2 NA intron (NM_139057, intron 15 of 21) intron (NM_139057, intron 15 of 21) 258319 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 318-572 chr9 36512530 36512734 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -60230 NM_001256685 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 270-167 chr19 2919192 2919369 + 2 NA TTS (NM_001319083) TTS (NM_001319083) 12172 NM_001319083 126295 Hs.591378 NM_173480 ENSG00000171970 ZNF57 ZNF424 zinc finger protein 57 protein-coding 277-244 chr22 43317458 43317730 + 2 NA intron (NM_173050, intron 3 of 21) MIR|SINE|MIR 25778 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 383-171 chr18 80136560 80136879 + 2 NA exon (NM_014913, exon 4 of 4) exon (NM_014913, exon 4 of 4) -11205 NR_028340 100130522 Hs.352602 NM_001145731 ENSG00000267270 PARD6G-AS1 - PARD6G antisense RNA 1 ncRNA 351-177 chr17 69851906 69852142 + 2 NA intron (NR_109972, intron 4 of 4) Charlie7|DNA|hAT-Charlie -109683 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 199-119 chr2 103919682 103919838 + 2 NA Intergenic LTR33A_|LTR|ERVL 488572 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 345-84 chr11 19609451 19609688 + 2 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 34259 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 390-131 chr16 56227735 56227993 + 2 NA intron (NM_138736, intron 2 of 7) intron (NM_138736, intron 2 of 7) -17656 NR_037499 100500891 NR_037499 ENSG00000265281 MIR3935 - microRNA 3935 ncRNA 459-302 chr8 115704982 115705309 + 2 NA Intergenic Intergenic -36170 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 334-68 chr10 83423377 83423704 + 2 NA Intergenic Intergenic 253549 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 329-567 chr8 51865517 51865692 + 2 NA intron (NM_001363193, intron 1 of 5) L1MA6|LINE|L1 33432 NM_001363193 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 310-384 chr4 175589761 175590036 + 2 NA Intergenic L1M5|LINE|L1 197778 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 546-119 chr2 151017002 151017389 + 2 NA Intergenic Intergenic 244668 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 316-403 chr4 92987048 92987353 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 682801 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 394-200 chr20 21013588 21013815 + 2 NA Intergenic Intergenic 92657 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 332-109 chr12 527643 527945 + 2 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 58692 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 172-84 chr3 121707260 121707365 + 2 NA intron (NM_001256486, intron 10 of 21) L1ME2z|LINE|L1 42429 NM_001256486 2804 Hs.213389 NM_004487 ENSG00000173230 GOLGB1 GCP|GCP372|GOLIM1 golgin B1 protein-coding 306-111 chr12 89440391 89440572 + 2 NA intron (NM_172240, intron 10 of 11) intron (NM_172240, intron 10 of 11) 84315 NM_003774 8693 Hs.25130 NM_003774 ENSG00000257594 GALNT4 GALNAC-T4|GALNACT4 polypeptide N-acetylgalactosaminyltransferase 4 protein-coding 333-49 chr10 33630922 33631103 + 2 NA Intergenic L2|LINE|L2 141668 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 466-208 chr5 120398885 120399263 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -65204 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 286-441 chr8 40084017 40084244 + 2 NA Intergenic Intergenic -69352 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 348-296 chr3 55665744 55666026 + 2 NA intron (NR_132749, intron 16 of 17) MIRb|SINE|MIR -6416 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 489-67 chr13 84458228 84458604 + 2 NA intron (NR_046871, intron 3 of 6) MLT1J-int|LTR|ERVL-MaLR 317814 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 411-262 chr6 139740142 139740453 + 2 NA Intergenic Intergenic -30776 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 241-226 chr21 26184356 26184509 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -13304 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 569-66 chr16 25786816 25787161 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 95029 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 428-161 chr21 30077098 30077372 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 89570 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 347-479 chr7 89674992 89675292 + 2 NA Intergenic L1PA13|LINE|L1 -444258 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 729-51 chr3 43223766 43224308 + 2 NA Intergenic L1MC5a|LINE|L1 -62475 NM_001330750 54861 Hs.476052 NM_017719 ENSG00000163788 SNRK HSNFRK SNF related kinase protein-coding 347-306 chr3 70333319 70333641 + 2 NA Intergenic Intergenic -20842 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 306-108 chr12 77693862 77694131 + 2 NA Intergenic Intergenic -136898 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 321-84 chr10 127771510 127771703 + 2 NA Intergenic Intergenic 34421 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 228-128 chr17 16534790 16534966 + 2 NA Intergenic L1MC5|LINE|L1 34326 NM_020653 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 250-290 chr3 155675914 155676103 + 2 NA exon (NM_001130960, exon 1 of 23) exon (NM_001130960, exon 1 of 23) 335 NM_001349250 23007 Hs.567423 NM_014996 ENSG00000114805 PLCH1 PLCL3 phospholipase C eta 1 protein-coding 286-159 chr17 53950679 53950913 + 2 NA Intergenic L1MA4A|LINE|L1 127869 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 519-124 chr2 209931738 209932232 + 2 NA intron (NM_032504, intron 37 of 63) intron (NM_032504, intron 37 of 63) -70580 NM_006916 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 530-274 chr9 34852499 34852940 + 2 NA Intergenic L1ME1|LINE|L1 -14133 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 387-308 chr6 53408810 53409125 + 2 NA Intergenic L1MC5|LINE|L1 -59788 NM_001242831 60481 Hs.520189 NM_021814 ENSG00000012660 ELOVL5 HELO1|SCA38|dJ483K16.1 ELOVL fatty acid elongase 5 protein-coding 495-9 chr1 167224315 167224612 + 2 NA intron (NM_001198786, intron 1 of 14) intron (NM_001198786, intron 1 of 14) 3577 NM_001198786 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 323-195 chr18 21523609 21523864 + 2 NA 3' UTR (NM_001142966, exon 33 of 33) 3' UTR (NM_001142966, exon 33 of 33) 76968 NM_052911 114799 Hs.464733 NM_052911 ENSG00000141446 ESCO1 A930014I12Rik|CTF|ECO1|EFO1|ESO1 establishment of sister chromatid cohesion N-acetyltransferase 1 protein-coding 333-448 chr5 52710593 52710879 + 2 NA Intergenic Intergenic -77180 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 237-258 chr3 191146110 191146253 + 2 NA Intergenic L1PA13|LINE|L1 -53060 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 348-412 chr5 74333499 74333686 + 2 NA Intergenic L2c|LINE|L2 11106 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 329-126 chr12 75440287 75440584 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -40320 NM_006851 11010 Hs.205558 NM_006851 ENSG00000139278 GLIPR1 CRISP7|GLIPR|RTVP1 GLI pathogenesis related 1 protein-coding 176-52 chr2 41630317 41630436 + 2 NA Intergenic Intergenic -247179 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 220-111 chr14 82624020 82624225 + 2 NA Intergenic Intergenic -18510 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 599-147 chr9 132518392 132518908 + 2 NA intron (NM_207417, intron 4 of 6) intron (NM_207417, intron 4 of 6) -63956 NM_020064 56751 Hs.283809 NM_020064 ENSG00000125492 BARHL1 - BarH like homeobox 1 protein-coding 310-374 chr4 88641443 88641653 + 2 NA intron (NM_001318505, intron 3 of 8) L1MEf|LINE|L1 49068 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 235-228 chr3 40001592 40001809 + 2 NA intron (NM_001284424, intron 2 of 15) L2b|LINE|L2 -98311 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 385-4 chr1 78780109 78780406 + 2 NA Intergenic L1ME3|LINE|L1 130426 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 209-213 chr3 177809648 177809805 + 2 NA Intergenic Intergenic -7139 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 285-421 chr8 109163097 109163293 + 2 NA Intergenic L1ME3A|LINE|L1 76567 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 235-8 chr1 67139472 67139688 + 2 NA Intergenic Intergenic -4610 NR_075077 400757 Hs.666621 NM_001013674 ENSG00000203963 C1orf141 - chromosome 1 open reading frame 141 protein-coding 339-622 chrX 54658096 54658336 + 2 NA Intergenic AluSz|SINE|Alu 127997 NM_019067 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 347-335 chr4 32162147 32162460 + 2 NA Intergenic Intergenic -139881 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 324-215 chr17 16271142 16271333 + 2 NA intron (NM_004278, intron 2 of 6) intron (NM_004278, intron 2 of 6) -10777 NR_031698 100302124 NR_031698 ENSG00000221355 MIR1288 MIRN1288|hsa-mir-1288 microRNA 1288 ncRNA 228-385 chrX 79782648 79782828 + 2 NA Intergenic Intergenic -232015 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 197-113 chr2 199568126 199568284 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger -39863 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 454-75 chr12 78678236 78678513 + 2 NA Intergenic Intergenic -185608 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 443-7 chr1 66064481 66064754 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -13899 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 333-386 chr4 57256560 57256827 + 2 NA Intergenic MER112|DNA|hAT-Charlie -146308 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 508-251 chr8 144978801 144979239 + 2 NA intron (NR_023392, intron 4 of 4) intron (NR_023392, intron 4 of 4) -15845 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 479-43 chr12 47982244 47982557 + 2 NA intron (NM_033150, intron 33 of 52) intron (NM_033150, intron 33 of 52) 18804 NM_001143842 79022 Hs.596726 NM_024056 ENSG00000134291 TMEM106C - transmembrane protein 106C protein-coding 180-14 chr10 33627757 33627924 + 2 NA Intergenic Intergenic 144840 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 289-214 chr2 35117055 35117242 + 2 NA Intergenic L1M1|LINE|L1 -354257 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 407-21 chr1 233643321 233643685 + 2 NA intron (NM_002245, intron 1 of 2) intron (NM_002245, intron 1 of 2) 19351 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 413-139 chr2 74253465 74253795 + 2 NA intron (NM_133478, intron 14 of 30) MER75|DNA|PiggyBac 55015 NM_006636 10797 Hs.469030 NM_006636 ENSG00000065911 MTHFD2 NMDMC methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase protein-coding 642-58 chr2 149963841 149964285 + 2 NA Intergenic AluSz6|SINE|Alu -104872 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 373-184 chr2 20443606 20443901 + 2 NA Intergenic AluSz|SINE|Alu -3321 NM_004040 388 Hs.502876 NM_004040 ENSG00000143878 RHOB ARH6|ARHB|MST081|MSTP081|RHOH6 ras homolog family member B protein-coding 376-113 chr15 33647385 33647613 + 2 NA intron (NM_001243996, intron 30 of 102) intron (NM_001243996, intron 30 of 102) -320998 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 182-148 chr6 56395970 56396103 + 2 NA Intergenic L1PBb|LINE|L1 -1908 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 223-71 chr12 125859540 125859696 + 2 NA Intergenic Intergenic 123756 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 452-261 chr8 13824640 13825069 + 2 NA Intergenic L1MEc|LINE|L1 195164 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 303-404 chr6 139633618 139633816 + 2 NA Intergenic L1MA3|LINE|L1 -137356 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 197-197 chr7 84696003 84696131 + 2 NA Intergenic L1MA8|LINE|L1 163591 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 640-58 chr2 17042533 17043110 + 2 NA Intergenic Intergenic -376987 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 606-82 chr2 72673244 72673717 + 2 NA intron (NR_135774, intron 6 of 19) intron (NR_135774, intron 6 of 19) 152553 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 395-362 chr9 120377016 120377314 + 2 NA Intergenic Intergenic -132115 NR_029604 406939 NR_029604 ENSG00000207814 MIR147A MIR147|MIRN147|hsa-mir-147a microRNA 147a ncRNA 375-259 chr3 6989529 6989774 + 2 NA intron (NM_000844, intron 1 of 9) L3|LINE|CR1 -95634 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 457-221 chr6 148354377 148354733 + 2 NA intron (NM_001346506, intron 1 of 20) intron (NM_001346506, intron 1 of 20) 11717 NM_001346506 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 313-73 chr11 17159668 17159926 + 2 NA intron (NM_001321380, intron 1 of 31) MLT2B4|LTR|ERVL 48189 NM_001321378 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 208-208 chr5 44395145 44395308 + 2 NA intron (NR_108034, intron 1 of 2) LTR33|LTR|ERVL -5806 NM_004465 2255 Hs.248049 NM_004465 ENSG00000070193 FGF10 - fibroblast growth factor 10 protein-coding 333-10 chr1 49169779 49170011 + 2 NA intron (NM_001323575, intron 4 of 12) intron (NM_001323575, intron 4 of 12) -87516 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 361-346 chr5 6000596 6000802 + 2 NA Intergenic Intergenic 336593 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 199-73 chr16 67229899 67230069 + 2 NA TTS (NM_014187) TTS (NM_014187) 2854 NM_014187 29100 Hs.433203 NM_014187 ENSG00000168701 TMEM208 HSPC171 transmembrane protein 208 protein-coding 488-70 chr13 87951377 87951754 + 2 NA Intergenic Intergenic -141045 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 323-172 chr16 3332727 3332965 + 2 NA Intergenic L1MA4|LINE|L1 -23043 NM_012368 4993 Hs.258574 NM_012368 ENSG00000168158 OR2C1 OLFmf3|OR2C2P olfactory receptor family 2 subfamily C member 1 protein-coding 482-60 chr12 13903965 13904305 + 2 NA intron (NM_000834, intron 1 of 12) L1ME3E|LINE|L1 76221 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 264-76 chr11 47570814 47571014 + 2 NA intron (NM_175732, intron 3 of 3) intron (NM_175732, intron 3 of 3) 5315 NM_175732 114971 Hs.656205 NM_175732 ENSG00000110536 PTPMT1 DUSP23|MOSP|PLIP|PNAS-129 protein tyrosine phosphatase mitochondrial 1 protein-coding 262-105 chr12 103258424 103258605 + 2 NA intron (NR_103526, intron 10 of 10) (ATATT)n|Simple_repeat|Simple_repeat 106672 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 445-172 chr3 77227684 77228028 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 129844 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 396-132 chr18 33689460 33689771 + 2 NA intron (NM_030632, intron 8 of 11) L1MC4|LINE|L1 111396 NM_030632 80816 Hs.464876 NM_030632 ENSG00000141431 ASXL3 BRPS|KIAA1713 ASXL transcriptional regulator 3 protein-coding 488-266 chr8 43090304 43090702 + 2 NA Intergenic L1MEf|LINE|L1 -3003 NM_001277971 84197 Hs.491646 NM_032237 ENSG00000185900 POMK MDDGA12|MDDGC12|SGK196 protein O-mannose kinase protein-coding 328-39 chr1 236307790 236307992 + 2 NA Intergenic Intergenic -25933 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 249-464 chrX 56192527 56192694 + 2 NA intron (NM_001324104, intron 2 of 6) L1MA3|LINE|L1 -39746 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 364-303 chr4 56176748 56177073 + 2 NA intron (NM_020722, intron 1 of 10) L1MA4|LINE|L1 6715 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 381-190 chr2 54929038 54929391 + 2 NA intron (NM_001039753, intron 27 of 40) intron (NM_001039753, intron 27 of 40) 81058 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 470-236 chr6 28310813 28311150 + 2 NA Intergenic L1PB1|LINE|L1 25153 NM_001243243 64288 Hs.656413 NM_030899 ENSG00000235109 ZSCAN31 ZNF20-Lp|ZNF310P|ZNF323 zinc finger and SCAN domain containing 31 protein-coding 404-268 chr6 14262382 14262641 + 2 NA Intergenic L1MEg|LINE|L1 22943 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 218-126 chr17 68569516 68569719 + 2 NA intron (NM_017565, intron 1 of 10) MER3|DNA|hAT-Charlie -11190 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 257-418 chr8 118306066 118306318 + 2 NA intron (NM_001101676, intron 4 of 4) LTR33A|LTR|ERVL -194373 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 415-194 chr4 43292249 43292486 + 2 NA Intergenic HERV16-int|LTR|ERVL 200176 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 260-421 chr8 19734816 19735024 + 2 NA intron (NM_001354488, intron 1 of 9) intron (NM_001354488, intron 1 of 9) 22163 NM_001354490 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 143-46 chr2 160941302 160941439 + 2 NA Intergenic Intergenic -195585 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 337-303 chr20 9455629 9455929 + 2 NA intron (NM_000933, intron 29 of 35) intron (NM_000933, intron 29 of 35) -58579 NM_001199897 24141 Hs.22920 NM_012261 ENSG00000125869 LAMP5 BAD-LAMP|BADLAMP|C20orf103|LAMP-5|UNC-46 lysosomal associated membrane protein family member 5 protein-coding 315-290 chr21 24942505 24942690 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 102047 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 430-313 chr8 107118037 107118369 + 2 NA Intergenic L1ME3D|LINE|L1 218312 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 289-305 chr3 90416696 90416963 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1309208 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 199-235 chr8 60475808 60475953 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -41030 NM_001242644 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 403-189 chr3 2618161 2618543 + 2 NA intron (NM_175607, intron 4 of 24) (AT)n|Simple_repeat|Simple_repeat -273863 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 513-26 chr10 42318325 42318675 + 2 NA Intergenic Intergenic 49545 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 424-210 chr5 3263764 3264153 + 2 NA Intergenic Intergenic 86123 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 374-228 chr20 58111993 58112265 + 2 NA Intergenic Intergenic -38773 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 475-160 chr20 41995444 41995816 + 2 NA Intergenic L1M2|LINE|L1 -377253 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 400-356 chr8 137783131 137783438 + 2 NA Intergenic L2a|LINE|L2 300261 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 198-72 chr14 95379378 95379524 + 2 NA Intergenic HAL1M8|LINE|L1 49867 NR_110127 101929080 Hs.525567 NR_110127 ENSG00000258630 LINC02292 - long intergenic non-protein coding RNA 2292 ncRNA 132-55 chr4 83127373 83127442 + 2 NA Intergenic Intergenic -12678 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 283-446 chr8 134858572 134858773 + 2 NA intron (NR_125427, intron 1 of 2) intron (NR_125427, intron 1 of 2) 8737 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 198-23 chr10 43640817 43640929 + 2 NA intron (NR_038867, intron 1 of 4) intron (NR_038867, intron 1 of 4) -2999 NR_047557 414197 Hs.605832 NR_047557 ENSG00000226245 ZNF32-AS1 ZNF32OS1|bA402L1.8 ZNF32 antisense RNA 1 ncRNA 526-18 chr10 23822031 23822308 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 127442 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 373-361 chr6 79105183 79105486 + 2 NA Intergenic Intergenic -27080 NM_017934 55023 Hs.511817 NM_017934 ENSG00000146247 PHIP BRWD2|DCAF14|DIDOD|WDR11|ndrp pleckstrin homology domain interacting protein protein-coding 368-122 chr12 133136881 133137234 + 2 NA intron (NM_015394, intron 1 of 4) L2c|LINE|L2 6430 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 338-158 chr14 27540436 27540663 + 2 NA intron (NR_148991, intron 2 of 2) L1MC5|LINE|L1 -72039 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 419-212 chr4 125074697 125075096 + 2 NA Intergenic Intergenic -241516 NM_001291285 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 286-95 chr12 91695648 91695903 + 2 NA Intergenic Intergenic 445938 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 153-8 chr1 105247960 105248045 + 2 NA Intergenic Intergenic 370933 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 448-232 chr5 178874317 178874702 + 2 NA intron (NM_058230, intron 4 of 4) L1PREC2|LINE|L1 14556 NM_058230 117608 Hs.724051 NM_058230 ENSG00000178338 ZNF354B KID2 zinc finger protein 354B protein-coding 281-231 chr2 148241322 148241519 + 2 NA intron (NM_018328, intron 4 of 14) intron (NM_018328, intron 4 of 14) -219816 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 187-157 chr7 27478879 27478986 + 2 NA Intergenic L2a|LINE|L2 -137042 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 304-56 chr10 77615143 77615425 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 22524 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 329-139 chr13 41048628 41048798 + 2 NA intron (NM_001370329, intron 1 of 9) intron (NM_001370329, intron 1 of 9) 12673 NM_001370330 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 214-175 chr2 178564976 178565162 + 2 NA exon (NM_133432, exon 155 of 192) exon (NM_133432, exon 155 of 192) 41878 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 308-536 chr9 73236410 73236611 + 2 NA Intergenic L1ME4b|LINE|L1 84645 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 323-170 chr15 97037578 97037818 + 2 NA Intergenic L1ME1|LINE|L1 254263 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 423-67 chr13 62135321 62135681 + 2 NA Intergenic MER4-int|LTR|ERV1 -76781 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 252-428 chr8 110439413 110439582 + 2 NA Intergenic ERVL-int|LTR|ERVL -463726 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 277-442 chr9 31323728 31323983 + 2 NA Intergenic Intergenic 57635 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 296-173 chr16 60632269 60632488 + 2 NA Intergenic LTR49-int|LTR|ERV1 -272585 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 294-134 chr15 27246327 27246552 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -85120 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 748-19 chr11 42277126 42277671 + 2 NA Intergenic AluSx3|SINE|Alu -23708 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 244-375 chr8 111800237 111800418 + 2 NA Intergenic HERV16-int|LTR|ERVL 423688 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 252-312 chr4 185829293 185829499 + 2 NA intron (NM_021069, intron 1 of 20) intron (NM_021069, intron 1 of 20) -17140 NM_001145670 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 316-221 chr18 11423237 11423536 + 2 NA Intergenic Intergenic -31092 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 230-189 chr2 182783562 182783739 + 2 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 67393 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 315-152 chr15 69108557 69108715 + 2 NA Intergenic Intergenic 27786 NR_026949 283673 Hs.177927 NM_173610 ENSG00000212766 EWSAT1 LINC00277|NCRNA00277|TMEM84 Ewing sarcoma associated transcript 1 ncRNA 337-87 chr11 44089875 44090180 + 2 NA Intergenic L1MEd|LINE|L1 -5522 NM_207122 2132 Hs.368404 NM_000401 ENSG00000151348 EXT2 SOTV|SSMS exostosin glycosyltransferase 2 protein-coding 286-297 chr3 150835664 150835884 + 2 NA Intergenic L1PA13|LINE|L1 69665 NM_001351281 646951 Hs.380222 NM_001351281 MINDY4B C3orf76|FAM188B2 MINDY family member 4B protein-coding 207-194 chr3 99998256 99998416 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) -33938 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 281-355 chr5 44213494 44213681 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -175145 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 151-90 chr9 24183375 24183477 + 2 NA Intergenic L1ME4c|LINE|L1 -332825 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 394-112 chr15 50961380 50961747 + 2 NA intron (NM_001252127, intron 14 of 20) L1MA4A|LINE|L1 17434 NR_027642 100132724 Hs.730493 NR_027642 DCAF13P3 - DDB1 and CUL4 associated factor 13 pseudogene 3 pseudo 292-10 chr1 64443775 64443933 + 2 NA Intergenic L1MC4|LINE|L1 -26275 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 322-212 chr17 82773274 82773553 + 2 NA intron (NM_005993, intron 6 of 38) intron (NM_005993, intron 6 of 38) 21348 NM_005993 6904 Hs.464391 NM_005993 ENSG00000141556 TBCD PEBAT|SSD-1|tfcD tubulin folding cofactor D protein-coding 296-393 chr6 11900599 11900846 + 2 NA Intergenic L1MC1|LINE|L1 100522 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 302-333 chr4 106527224 106527399 + 2 NA Intergenic L1MC1|LINE|L1 93687 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 208-171 chr3 113205657 113205821 + 2 NA Intergenic Intergenic -5818 NM_001301867 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 144-37 chr2 11604359 11604488 + 2 NA intron (NM_014668, intron 17 of 32) MIR|SINE|MIR 61737 NM_033090 9687 Hs.467733 NM_014668 ENSG00000196208 GREB1 - growth regulating estrogen receptor binding 1 protein-coding 216-231 chr3 112240969 112241150 + 2 NA intron (NR_135297, intron 7 of 22) L1MA1|LINE|L1 53157 NR_135297 285335 Hs.680112 NM_183061 ENSG00000172139 SLC9C1 NHE|NHE-10|SLC9A10|sperm-NHE solute carrier family 9 member C1 protein-coding 324-60 chr10 70029675 70029926 + 2 NA Intergenic L1M8|LINE|L1 -23046 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 191-105 chr2 120753417 120753565 + 2 NA intron (NM_001371271, intron 1 of 13) L1ME4a|LINE|L1 17623 NM_001371271 483-137 chr20 10196520 10196899 + 2 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -22089 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 334-490 chr7 31187786 31187999 + 2 NA Intergenic Intergenic 135431 NM_001199635 117 Hs.377783 NM_001118 ENSG00000078549 ADCYAP1R1 PAC1|PAC1R|PACAPR|PACAPRI ADCYAP receptor type I protein-coding 437-191 chr4 60171367 60171622 + 2 NA Intergenic Intergenic -751125 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 268-281 chr4 73377062 73377263 + 2 NA Intergenic Intergenic -27125 NM_000477 213 Hs.418167 NM_000477 ENSG00000163631 ALB HSA|PRO0883|PRO0903|PRO1341 albumin protein-coding 202-180 chr4 26376594 26376748 + 2 NA intron (NM_203284, intron 2 of 11) L1MB3|LINE|L1 55443 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 355-249 chr2 118492520 118492701 + 2 NA Intergenic Intergenic 110356 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 182-136 chr5 42643399 42643545 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) 77608 NM_001242462 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 251-144 chr18 77369168 77369376 + 2 NA Intergenic L1MEf|LINE|L1 119424 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 169-59 chr2 77869906 77870047 + 2 NA intron (NR_110288, intron 2 of 3) intron (NR_110288, intron 2 of 3) -45958 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 299-80 chr11 78670777 78670955 + 2 NA intron (NM_001098816, intron 31 of 33) Charlie17a|DNA|hAT-Charlie -96002 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 280-269 chr3 174975464 174975736 + 2 NA intron (NM_207015, intron 1 of 13) MLT1E1A|LTR|ERVL-MaLR 116266 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 329-597 chr8 134178106 134178312 + 2 NA Intergenic HERV16-int|LTR|ERVL 291713 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 358-390 chr5 162577750 162578057 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 510261 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 264-396 chr7 154812086 154812235 + 2 NA intron (NR_157196, intron 16 of 25) intron (NR_157196, intron 16 of 25) -116357 NR_024476 100132707 Hs.586358 NR_024476 ENSG00000214106 PAXIP1-AS2 PAXIP1OS PAXIP1 antisense RNA 2 ncRNA 160-58 chr22 46833066 46833189 + 2 NA intron (NM_001284305, intron 4 of 12) intron (NM_001284305, intron 4 of 12) 59200 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 266-454 chr9 110988418 110988559 + 2 NA intron (NM_001351397, intron 1 of 4) L1MB7|LINE|L1 48292 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 234-106 chr14 84084008 84084202 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -1187827 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 738-37 chr2 220275822 220276307 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -369499 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 226-37 chr10 39074345 39074541 + 2 NA Intergenic ALR/Alpha|Satellite|centr 377847 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 498-115 chr2 31698400 31698737 + 2 NA Intergenic L1M3b|LINE|L1 105412 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 311-316 chr21 21401554 21401804 + 2 NA intron (NM_001352592, intron 10 of 18) L1MA7|LINE|L1 254517 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 325-572 chr9 34493762 34493968 + 2 NA intron (NM_001281428, intron 9 of 19) intron (NM_001281428, intron 9 of 19) 29125 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 333-516 chr6 140918207 140918521 + 2 NA Intergenic Intergenic 234550 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 400-93 chr14 60702566 60702879 + 2 NA Intergenic Intergenic 21629 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 182-181 chr9 115849250 115849382 + 2 NA Intergenic L2a|LINE|L2 75891 NR_024032 58483 Hs.23367 NR_024032 ENSG00000204148 LINC00474 C9orf27|EST-YD1 long intergenic non-protein coding RNA 474 ncRNA 399-152 chr2 83872995 83873379 + 2 NA Intergenic LTR22A|LTR|ERVK 350373 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 226-191 chr2 221011892 221012041 + 2 NA Intergenic MIRb|SINE|MIR 560338 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 314-33 chr1 173111792 173112075 + 2 NA Intergenic Intergenic -60970 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 322-477 chr7 4864093 4864312 + 2 NA intron (NM_018059, intron 2 of 14) L2b|LINE|L2 -2172 NM_020144 56903 Hs.487409 NM_020144 ENSG00000218823 PAPOLB PAPT|TPAP poly(A) polymerase beta protein-coding 598-6 chr1 83093343 83093890 + 2 NA intron (NR_147074, intron 7 of 10) intron (NR_147074, intron 7 of 10) -107408 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 440-6 chr1 85965103 85965492 + 2 NA intron (NM_152890, intron 22 of 59) L2a|LINE|L2 191174 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 235-25 chr1 210808069 210808288 + 2 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 325196 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 573-9 chr1 119145744 119146225 + 2 NA intron (NR_125975, intron 2 of 6) intron (NR_125975, intron 2 of 6) -5312 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 308-239 chr2 108264951 108265120 + 2 NA intron (NM_001008743, intron 7 of 7) intron (NM_001008743, intron 7 of 7) -23860 NM_001056 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 482-199 chr5 44134467 44134818 + 2 NA Intergenic L1MA3|LINE|L1 -254090 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 446-110 chr15 66591444 66591883 + 2 NA intron (NR_110372, intron 1 of 4) L2a|LINE|L2 9473 NR_110372 102723165 Hs.636703 NR_110372 ENSG00000259471 LINC01169 - long intergenic non-protein coding RNA 1169 ncRNA 325-267 chr2 71472264 71472545 + 2 NA intron (NM_001130985, intron 1 of 54) intron (NM_001130985, intron 1 of 54) 5705 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 144-69 chr4 78022747 78022838 + 2 NA Intergenic Intergenic -34531 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 225-352 chr8 76228607 76228821 + 2 NA Intergenic Intergenic -177940 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 309-7 chr1 58430694 58430957 + 2 NA Intergenic Intergenic 115901 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 765-61 chr7 4373464 4374009 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -238899 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 211-227 chr5 27595473 27595646 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 123267 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 330-451 chr5 173874482 173874748 + 2 NA Intergenic L1ME3G|LINE|L1 -13734 NM_030627 80315 Hs.127126 NM_030627 ENSG00000113742 CPEB4 CPE-BP4|hCPEB-4 cytoplasmic polyadenylation element binding protein 4 protein-coding 221-209 chr4 28534133 28534285 + 2 NA Intergenic Intergenic -285373 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 280-14 chr1 82753602 82753826 + 2 NA Intergenic Intergenic -149469 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 314-128 chr12 45018390 45018620 + 2 NA intron (NM_001004329, intron 3 of 3) L1ME3A|LINE|L1 32594 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 218-341 chr8 138347310 138347512 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 149850 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 270-13 chr1 115275652 115275872 + 2 NA Intergenic Intergenic -7272 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 579-76 chr2 133254787 133255159 + 2 NA intron (NM_207481, intron 4 of 17) MIRc|SINE|MIR -11222 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 457-29 chr10 76688985 76689282 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -198911 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 671-38 chr19 50059717 50060225 + 2 NA intron (NR_138096, intron 1 of 4) intron (NR_138096, intron 1 of 4) 9382 NR_027257 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 435-66 chr12 99681819 99682168 + 2 NA intron (NM_152788, intron 8 of 25) L1PB1|LINE|L1 34240 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 398-365 chr8 119276409 119276720 + 2 NA Intergenic MIRc|SINE|MIR -29707 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 300-86 chr12 31360781 31361058 + 2 NA Intergenic Intergenic 8382 NR_146469 101929027 Hs.266041 NR_146469 ENSG00000256232 LINC02387 - long intergenic non-protein coding RNA 2387 ncRNA 559-110 chr21 26986968 26987334 + 2 NA Intergenic L2b|LINE|L2 -20063 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 371-71 chr11 80472109 80472453 + 2 NA Intergenic Intergenic 290522 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 328-574 chr8 115369643 115369853 + 2 NA Intergenic Intergenic 298265 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 202-198 chr5 7716555 7716725 + 2 NA intron (NM_020546, intron 11 of 24) intron (NM_020546, intron 11 of 24) 134493 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 385-404 chr9 40882657 40882992 + 2 NA Intergenic ALR/Alpha|Satellite|centr 46268 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 202-142 chr20 44986098 44986239 + 2 NA intron (NM_001352385, intron 4 of 11) L2a|LINE|L2 19656 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 287-218 chr2 212927230 212927479 + 2 NA Intergenic Intergenic -1018 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 358-321 chr4 13863928 13864258 + 2 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) 208914 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 629-98 chr5 26393688 26394146 + 2 NA Intergenic L1MEg|LINE|L1 644669 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 230-202 chr20 15404008 15404141 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 207234 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 226-326 chr7 77229534 77229749 + 2 NA intron (NM_020879, intron 2 of 18) L1MC5a|LINE|L1 -29822 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 231-259 chr4 92757515 92757680 + 2 NA intron (NM_001286838, intron 2 of 14) L2a|LINE|L2 453198 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 336-482 chr6 45437285 45437607 + 2 NA intron (NM_001015051, intron 4 of 7) intron (NM_001015051, intron 4 of 7) 15171 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 626-19 chr10 98664873 98665341 + 2 NA intron (NM_021828, intron 6 of 11) L1PA16|LINE|L1 -218144 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 241-407 chr8 130252871 130253024 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 43586 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 332-78 chr10 128283247 128283464 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -2595 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 304-401 chr5 2868725 2869010 + 2 NA Intergenic Intergenic -48987 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 346-273 chr2 211959164 211959431 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 467063 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 322-207 chr17 70048799 70049094 + 2 NA Intergenic Intergenic -2325 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 264-251 chr21 22321197 22321366 + 2 NA Intergenic LTR16C|LTR|ERVL 222664 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 252-226 chr2 214101821 214102058 + 2 NA intron (NR_047660, intron 12 of 14) intron (NR_047660, intron 12 of 14) -309115 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 243-423 chr7 63955633 63955797 + 2 NA Intergenic AluSz6|SINE|Alu -43091 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 525-229 chr6 132316506 132316993 + 2 NA intron (NM_015529, intron 9 of 11) L1M4a1|LINE|L1 84726 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 790-19 chr18 78470029 78470638 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -476606 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 353-277 chr20 14269567 14269858 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 67900 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 511-276 chr9 32593694 32593994 + 2 NA Intergenic L1MEc|LINE|L1 -20660 NM_001199987 4712 Hs.493668 NM_002493 ENSG00000165264 NDUFB6 B17|CI NADH:ubiquinone oxidoreductase subunit B6 protein-coding 193-151 chr4 26255028 26255215 + 2 NA Intergenic Intergenic -64589 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 671-89 chr7 52061536 52062112 + 2 NA Intergenic LTR48|LTR|ERV1 -668568 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 535-227 chr7 46012874 46013392 + 2 NA Intergenic L1MC3|LINE|L1 -91861 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 605-4 chr1 166281992 166282405 + 2 NA Intergenic Intergenic -115443 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 291-180 chr17_KI270729v1_random 26308 26519 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 271-17 chr1 165807507 165807726 + 2 NA Intergenic Intergenic -19998 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 650-127 chr8 86235551 86236018 + 2 NA Intergenic AluSx|SINE|Alu -5403 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 344-283 chr20 53373940 53374185 + 2 NA intron (NM_173485, intron 2 of 2) L1PA15|LINE|L1 -178708 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 127-49 chr2 150575416 150575524 + 2 NA Intergenic MIR|SINE|MIR -3249 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 183-54 chr15 76319557 76319684 + 2 NA Intergenic L2a|LINE|L2 -8151 NM_000126 2108 Hs.39925 NM_000126 ENSG00000140374 ETFA EMA|GA2|MADD electron transfer flavoprotein subunit alpha protein-coding 284-291 chr4 87199008 87199264 + 2 NA intron (NM_001292006, intron 1 of 9) L1ME1|LINE|L1 21132 NM_001292003 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 296-502 chrX 58391669 58391915 + 2 NA Intergenic ALR/Alpha|Satellite|centr -481159 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 389-156 chr2 15742280 15742506 + 2 NA Intergenic L1MD2|LINE|L1 51611 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 394-267 chr5 64057430 64057655 + 2 NA Intergenic Intergenic -95250 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 283-264 chr20 42230345 42230598 + 2 NA intron (NM_133170, intron 16 of 31) intron (NM_133170, intron 16 of 31) -455012 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 265-70 chr12 1725381 1725547 + 2 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 34394 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 393-384 chr9 74882048 74882263 + 2 NA intron (NM_017662, intron 1 of 38) L1M2|LINE|L1 5192 NM_001177311 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 247-194 chr2 67338302 67338470 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -58947 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 277-387 chr7 96972802 96973060 + 2 NA intron (NR_015448, intron 2 of 2) MER102a|DNA|hAT-Charlie -32622 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 534-172 chr4 20172472 20172833 + 2 NA Intergenic LTR82B|LTR|ERVL -79253 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 232-370 chr8 60338026 60338198 + 2 NA Intergenic Intergenic -56712 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 317-267 chr2 227063309 227063533 + 2 NA intron (NM_000092, intron 25 of 47) intron (NM_000092, intron 25 of 47) 101138 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 426-42 chr11 37181309 37181560 + 2 NA Intergenic MER50B|LTR|ERV1 -583155 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 330-382 chr4 80720260 80720465 + 2 NA intron (NM_001206997, intron 4 of 6) L1MEc|LINE|L1 -310346 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 315-429 chr6 161979639 161979813 + 2 NA intron (NM_013988, intron 2 of 8) intron (NM_013988, intron 2 of 8) 508749 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 338-91 chr10 130995843 130996111 + 2 NA Intergenic L1M4a1|LINE|L1 -33309 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 258-130 chr14 72466259 72466426 + 2 NA intron (NM_001370288, intron 7 of 16) L1ME1|LINE|L1 -50478 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 402-291 chr5 164759498 164759715 + 2 NA Intergenic Intergenic 289327 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 593-112 chr5 1718210 1718551 + 2 NA Intergenic AluSx1|SINE|Alu -9512 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 219-305 chr6 21234800 21234948 + 2 NA Intergenic MIRb|SINE|MIR 277018 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 331-307 chr2 225896462 225896768 + 2 NA Intergenic Intergenic -246179 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 201-192 chr5 45845211 45845365 + 2 NA Intergenic Intergenic -148908 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 371-346 chr6 154238500 154238720 + 2 NA intron (NM_015553, intron 5 of 11) intron (NM_015553, intron 5 of 11) 91471 NM_001130699 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 514-293 chr8 139986344 139986803 + 2 NA intron (NM_001160372, intron 19 of 22) L1ME2z|LINE|L1 113962 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 257-185 chr2 56150917 56151110 + 2 NA Intergenic MamGypLTR3|LTR|Gypsy -32977 NM_001080433 114800 Hs.117136 NM_001080433 ENSG00000055813 CCDC85A - coiled-coil domain containing 85A protein-coding 385-104 chr14 98099799 98100140 + 2 NA Intergenic L1MA2|LINE|L1 -121845 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 325-396 chr4 71081429 71081639 + 2 NA Intergenic Intergenic 87885 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 487-212 chr4 66882715 66883172 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 539057 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 610-158 chr7 31210212 31210658 + 2 NA Intergenic Intergenic 130291 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 252-221 chr2 187813199 187813350 + 2 NA Intergenic L1ME3B|LINE|L1 -258769 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 348-26 chr1 164426243 164426499 + 2 NA Intergenic Intergenic -132989 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 519-39 chr11 98711714 98712145 + 2 NA Intergenic L1ME3E|LINE|L1 -309020 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 263-211 chr2 118726865 118727116 + 2 NA Intergenic Intergenic 121193 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 303-308 chr4 31464861 31465103 + 2 NA Intergenic HUERS-P1-int|LTR|ERV1 -41562 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 330-157 chr14 55235433 55235689 + 2 NA Intergenic L1MA6|LINE|L1 -35860 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 328-174 chr15 55563729 55563899 + 2 NA intron (NM_015617, intron 1 of 2) L1MB7|LINE|L1 24531 NM_001330326 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 352-69 chr11 11167920 11168106 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 185237 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 255-190 chr2 38262852 38263023 + 2 NA Intergenic Intergenic 113593 NM_001330460 64225 Hs.594950 NM_022374 ENSG00000119787 ATL2 ARL3IP2|ARL6IP2|aip-2|atlastin2 atlastin GTPase 2 protein-coding 226-186 chr2 164573310 164573504 + 2 NA intron (NM_004490, intron 2 of 13) intron (NM_004490, intron 2 of 13) -4912 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 351-29 chr1 232044267 232044473 + 2 NA Intergenic MIRc|SINE|MIR 118536 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 293-462 chr8 138208268 138208479 + 2 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -124828 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 235-41 chr10 60353978 60354204 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) 35784 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 225-292 chr5 126212787 126212952 + 2 NA Intergenic Intergenic 33292 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 467-189 chr3 166841737 166842105 + 2 NA Intergenic Intergenic -56762 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 318-484 chr6 114977805 114978032 + 2 NA Intergenic Intergenic 665917 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 276-231 chr2 80846408 80846621 + 2 NA Intergenic Intergenic 533135 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 336-50 chr1 241667914 241668176 + 2 NA intron (NM_001367482, intron 2 of 27) intron (NM_001367482, intron 2 of 27) 15764 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 523-150 chr20 24897825 24898275 + 2 NA Intergenic MER21B|LTR|ERVL -51219 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 416-148 chr18 51917839 51918229 + 2 NA Intergenic Intergenic -422163 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 232-91 chr13 108670822 108671003 + 2 NA intron (NM_015011, intron 2 of 34) intron (NM_015011, intron 2 of 34) 41301 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 205-110 chr16 13742425 13742584 + 2 NA Intergenic Intergenic -177653 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 526-140 chr2 159912117 159912484 + 2 NA Intergenic Intergenic -7544 NM_002349 4065 Hs.153563 NM_002349 ENSG00000054219 LY75 CD205|CLEC13B|DEC-205|GP200-MR6|LY-75 lymphocyte antigen 75 protein-coding 200-152 chr20 13833749 13833888 + 2 NA Intergenic Intergenic 48790 NR_147978 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 189-71 chr17 32383389 32383532 + 2 NA Intergenic Intergenic 33322 NM_003457 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 444-25 chr10 77280397 77280724 + 2 NA intron (NM_001271518, intron 1 of 27) AluJb|SINE|Alu 70201 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 420-170 chr21 35784319 35784644 + 2 NA Intergenic L1ME3A|LINE|L1 63766 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 607-6 chr1 76566645 76567137 + 2 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 212376 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 293-470 chr9 68441236 68441458 + 2 NA intron (NM_021965, intron 6 of 10) L1MD2|LINE|L1 -83481 NR_015423 572558 Hs.552819 NR_015423 ENSG00000224958 PGM5-AS1 FAM233A PGM5 antisense RNA 1 ncRNA 217-90 chr12 83404303 83404446 + 2 NA Intergenic Intergenic 717219 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 343-281 chr2 173771668 173771888 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 192102 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 477-299 chr9 29637703 29638037 + 2 NA Intergenic Intergenic -424269 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 614-106 chr5 128094646 128095018 + 2 NA intron (NM_001046, intron 1 of 26) MER3|DNA|hAT-Charlie 11066 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 221-190 chr3 88879759 88879928 + 2 NA Intergenic Intergenic -227778 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 488-173 chr3 84307513 84307902 + 2 NA Intergenic Intergenic 561868 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 430-86 chr14 57661894 57662111 + 2 NA intron (NM_001352014, intron 1 of 9) intron (NM_001352014, intron 1 of 9) -168145 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 348-264 chr20 37617587 37617910 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 5371 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 356-121 chr12 130654256 130654461 + 2 NA intron (NM_001351226, intron 1 of 21) MSTB-int|LTR|ERVL-MaLR -20438 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 297-197 chr2 6985948 6986235 + 2 NA intron (NM_001349186, intron 2 of 7) intron (NM_001349186, intron 2 of 7) 53007 NR_146069 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4|hUIP4 ring finger protein 144A protein-coding 392-89 chr15 33624411 33624619 + 2 NA intron (NM_001243996, intron 20 of 102) intron (NM_001243996, intron 20 of 102) 313548 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 396-289 chr5 107212584 107212952 + 2 NA Intergenic Intergenic -201754 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 265-256 chr4 27361027 27361219 + 2 NA Intergenic Intergenic 143644 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 229-284 chr4 151496341 151496513 + 2 NA intron (NM_001109977, intron 3 of 13) intron (NM_001109977, intron 3 of 13) 87251 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 363-63 chr10 108819289 108819593 + 2 NA Intergenic Intergenic -750148 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 324-148 chr13 102942535 102942825 + 2 NA Intergenic Intergenic 62581 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 460-173 chr20 42548806 42549261 + 2 NA intron (NM_133170, intron 7 of 31) L1M5|LINE|L1 -136450 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 466-214 chr5 147264176 147264574 + 2 NA intron (NM_001112724, intron 2 of 12) HAL1|LINE|L1 29349 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 233-296 chr5 45019048 45019207 + 2 NA Intergenic Intergenic 210180 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 553-219 chr7 70950177 70950640 + 2 NA Intergenic L1PB4|LINE|L1 -181736 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 214-222 chr3 155366423 155366605 + 2 NA Intergenic LTR49-int|LTR|ERV1 -72831 NM_001352129 100507537 Hs.518341 NM_001352129 ENSG00000240045 STRIT1 DWORF small transmembrane regulator of ion transport 1 protein-coding 267 chr1 10250050 10250226 + 2 NA intron (NM_001365953, intron 2 of 20) intron (NM_001365953, intron 2 of 20) 19374 NM_001365953 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 210-68 chr14 20253683 20253827 + 2 NA Intergenic L1MC3|LINE|L1 10963 NM_001004479 390442 Hs.553767 NM_001004479 ENSG00000176198 OR11H4 OR14-36 olfactory receptor family 11 subfamily H member 4 protein-coding 475-3 chr1 40553388 40553666 + 2 NA Intergenic Intergenic 21890 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 271-210 chr2 125211979 125212165 + 2 NA Intergenic Intergenic 905913 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 351-164 chr16 73465254 73465467 + 2 NA Intergenic Intergenic 78555 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 283-366 chr5 77023208 77023381 + 2 NA Intergenic Intergenic -7110 NM_018046 55109 Hs.634849 NM_018046 ENSG00000164252 AGGF1 GPATC7|GPATCH7|HSU84971|HUS84971|VG5Q angiogenic factor with G-patch and FHA domains 1 protein-coding 226-184 chr2 150293773 150293942 + 2 NA Intergenic Intergenic -36850 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 377-97 chr12 109423470 109423778 + 2 NA intron (NM_001101421, intron 15 of 30) L1MB2|LINE|L1 34905 NM_001101421 283446 Hs.512008 NM_173597 ENSG00000174527 MYO1H - myosin IH protein-coding 395-29 chr10 11279493 11279881 + 2 NA intron (NM_001025076, intron 8 of 13) intron (NM_001025076, intron 8 of 13) 64987 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 688-71 chr22 27966959 27967446 + 2 NA intron (NR_026963, intron 2 of 4) L1MC4|LINE|L1 -46590 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 237-218 chr21 31070255 31070458 + 2 NA Intergenic Intergenic -31880 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 433-44 chr11 45460268 45460636 + 2 NA Intergenic L2a|LINE|L2 89055 NR_122071 399886 Hs.559970 NR_122071 ENSG00000255267 LINC02687 - long intergenic non-protein coding RNA 2687 ncRNA 432-71 chr12 129022280 129022647 + 2 NA Intergenic Intergenic -87227 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 222-281 chr4 184223941 184224126 + 2 NA Intergenic MER34C2|LTR|ERV1 -6160 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 238-250 chr3 153271903 153272115 + 2 NA Intergenic Intergenic 109783 NM_002886 5912 Hs.98643 NM_002886 ENSG00000181467 RAP2B - RAP2B, member of RAS oncogene family protein-coding 254-424 chr8 119179275 119179523 + 2 NA Intergenic Intergenic -28964 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 445-232 chr6 46920743 46921035 + 2 NA intron (NM_015234, intron 1 of 20) intron (NM_015234, intron 1 of 20) 1049 NM_001098518 221395 Hs.362806 NM_015234 ENSG00000069122 ADGRF5 GPR116|KPG_001 adhesion G protein-coupled receptor F5 protein-coding 755-63 chr7 44527486 44528186 + 2 NA intron (NM_013389, intron 10 of 19) L1M4c|LINE|L1 13494 NM_001300967 29881 Hs.567486 NM_013389 ENSG00000015520 NPC1L1 LDLCQ7|NPC11L1|SLC65A2 NPC1 like intracellular cholesterol transporter 1 protein-coding 436-161 chr20 30150812 30151074 + 2 NA Intergenic ALR/Alpha|Satellite|centr 135594 NR_145432 400841 Hs.516959 NM_207470 LINC01597 - long intergenic non-protein coding RNA 1597 ncRNA 248-279 chr4 57016608 57016785 + 2 NA intron (NM_001303269, intron 15 of 25) intron (NM_001303269, intron 15 of 25) 37800 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 523-201 chr4 86652647 86653083 + 2 NA intron (NM_080685, intron 2 of 47) L1M1|LINE|L1 58550 NM_080683 5783 Hs.436142 NM_006264 ENSG00000163629 PTPN13 FAP-1|PNP1|PTP-BAS|PTP-BL|PTP1E|PTPL1|PTPLE|hPTP1E protein tyrosine phosphatase non-receptor type 13 protein-coding 325-146 chr13 35616735 35616932 + 2 NA intron (NM_001204197, intron 8 of 17) intron (NM_001204197, intron 8 of 17) -80691 NR_132116 100507114 Hs.236298 NR_132115 ENSG00000236036 LINC00445 - long intergenic non-protein coding RNA 445 ncRNA 188-217 chr9 29447567 29447735 + 2 NA Intergenic Intergenic -234050 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 142-12 chr12 14086737 14086825 + 2 NA Intergenic L1MB7|LINE|L1 -106425 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 690-60 chr2 156829830 156830316 + 2 NA Intergenic L1MA4A|LINE|L1 393694 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 460-134 chr2 22764958 22765289 + 2 NA Intergenic L1MB1|LINE|L1 228644 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 215-266 chr5 107921566 107921762 + 2 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -250727 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 690-44 chr15 62404351 62405010 + 2 NA Intergenic Intergenic 61651 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 508-240 chr8 105261607 105261924 + 2 NA Intergenic L1PA11|LINE|L1 -56673 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 344-491 chr8 91910835 91911115 + 2 NA Intergenic MER51A|LTR|ERV1 106705 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 247-304 chr4 101547192 101547332 + 2 NA Intergenic L1MD|LINE|L1 199485 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 312-253 chr2 116067336 116067535 + 2 NA Intergenic L1PA16|LINE|L1 723620 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 293-102 chr13 48632959 48633228 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -20836 NM_020377 57105 Hs.253706 NM_020377 ENSG00000152207 CYSLTR2 CYSLT2|CYSLT2R|GPCR21|HG57|HPN321|KPG_011|PSEC0146|hGPCR21 cysteinyl leukotriene receptor 2 protein-coding 262-174 chr18 1826970 1827192 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -467452 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 532-264 chr8 48886865 48887368 + 2 NA Intergenic (CT)n|Simple_repeat|Simple_repeat 34313 NM_003068 6591 Hs.360174 NM_003068 ENSG00000019549 SNAI2 SLUG|SLUGH|SLUGH1|SNAIL2|WS2D snail family transcriptional repressor 2 protein-coding 250-360 chr5 127461064 127461226 + 2 NA TTS (NM_032446) TTS (NM_032446) -56495 NM_001286808 133619 Hs.483259 NM_130809 ENSG00000164244 PRRC1 - proline rich coiled-coil 1 protein-coding 813-16 chr17 54677762 54678216 + 2 NA Intergenic AluJr|SINE|Alu -222702 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 410-49 chr11 32294804 32295125 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 105436 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 448-142 chr21 27368267 27368581 + 2 NA Intergenic MER34B|LTR|ERV1 -353955 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 352-306 chr3 645314 645532 + 2 NA intron (NR_110118, intron 1 of 3) AluSz|SINE|Alu 53318 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 270-220 chr21 30690672 30690871 + 2 NA Intergenic Intergenic 28006 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 533-235 chr8 125337947 125338337 + 2 NA intron (NM_001349486, intron 5 of 7) MIRb|SINE|MIR -92216 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 353-319 chr3 34702483 34702689 + 2 NA Intergenic AluSp|SINE|Alu 691437 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 296-241 chr2 142404878 142405065 + 2 NA Intergenic L1MA5|LINE|L1 -273270 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 399-157 chr2 118259319 118259526 + 2 NA Intergenic L1ME1|LINE|L1 -73036 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 297-188 chr19 22480882 22481123 + 2 NA intron (NR_160728, intron 1 of 1) L1PA17|LINE|L1 46947 NR_110427 101929124 Hs.589610 NR_110427 ENSG00000260599 LOC101929124 - uncharacterized LOC101929124 ncRNA 430-15 chr1 181275257 181275515 + 2 NA Intergenic Intergenic 38998 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 454-222 chr3 185010324 185010679 + 2 NA intron (NM_001009921, intron 44 of 46) L1MEc|LINE|L1 142559 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 342-25 chr1 109285215 109285493 + 2 NA Intergenic MER41B|LTR|ERV1 -2186 NM_001350238 84722 Hs.405925 NM_032636 ENSG00000134222 PSRC1 DDA3|FP3214 proline and serine rich coiled-coil 1 protein-coding 321-80 chr10 117813868 117814103 + 2 NA Intergenic Intergenic -232836 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 359-257 chr2 183936789 183936991 + 2 NA Intergenic Intergenic -442085 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 253-341 chr5 117094762 117094928 + 2 NA Intergenic L1MA4|LINE|L1 -320667 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 268-294 chr4 135747047 135747194 + 2 NA Intergenic L1M4c|LINE|L1 140973 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 390-224 chr3 2263482 2263690 + 2 NA intron (NM_001206955, intron 1 of 23) L1MA4|LINE|L1 24757 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 359-506 chr9 29125167 29125470 + 2 NA intron (NM_001354574, intron 1 of 5) L1PA8|LINE|L1 86981 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 242-4 chr1 38351627 38351763 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -123501 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 376-273 chr4 42777339 42777610 + 2 NA Intergenic Intergenic -115792 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 662-59 chr3 60856718 60857156 + 2 NA intron (NM_001320900, intron 4 of 9) L2c|LINE|L2 -239067 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 415-210 chr5 25521207 25521455 + 2 NA Intergenic Intergenic 330378 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 339-444 chr5 36905333 36905612 + 2 NA intron (NM_015384, intron 1 of 45) intron (NM_015384, intron 1 of 45) 28703 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 194-232 chrX 7694671 7694789 + 2 NA Intergenic Intergenic -147532 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 232-289 chr5 9064147 9064335 + 2 NA intron (NM_003966, intron 17 of 22) intron (NM_003966, intron 17 of 22) -10346 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 372-352 chr4 34410515 34410733 + 2 NA Intergenic L1PA14|LINE|L1 -140877 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 542-238 chr9 83046293 83046815 + 2 NA intron (NM_152573, intron 1 of 16) intron (NM_152573, intron 1 of 16) 16588 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 512-64 chr12 46909804 46910298 + 2 NA Intergenic L1MA3|LINE|L1 -84054 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 481-27 chr10 48854057 48854511 + 2 NA intron (NM_020945, intron 39 of 61) AluJb|SINE|Alu 59951 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 349-141 chr13 33098467 33098793 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 82207 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 373-232 chr20 11032644 11032959 + 2 NA Intergenic Intergenic 6257 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 239-115 chr14 99079638 99079838 + 2 NA Intergenic MIRb|SINE|MIR 192459 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 296-416 chr6 129089694 129089912 + 2 NA intron (NM_000426, intron 3 of 64) intron (NM_000426, intron 3 of 64) 206662 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 194-67 chr15 90689617 90689743 + 2 NA intron (NR_120372, intron 2 of 3) L1MEf|LINE|L1 27460 NR_120372 101926895 Hs.564760 NR_120372 ENSG00000259736 CRTC3-AS1 - CRTC3 antisense RNA 1 ncRNA 275-192 chr2 66192422 66192661 + 2 NA Intergenic Intergenic 165787 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 281-90 chr12 66280770 66280988 + 2 NA Intergenic AluJb|SINE|Alu -21614 NM_001370285 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 218-48 chr11 35406227 35406407 + 2 NA intron (NM_001252652, intron 1 of 11) L2c|LINE|L2 13241 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 361-483 chr9 103152551 103152778 + 2 NA intron (NR_121578, intron 8 of 9) L1M1|LINE|L1 157331 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 568-131 chr3 26924868 26925297 + 2 NA Intergenic HAL1|LINE|L1 230525 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 282-338 chr4 52752908 52753130 + 2 NA Intergenic Intergenic -1379 NM_024534 100288413 Hs.363087 NM_024534 ENSG00000226887 ERVMER34-1 HEMO|envMER34 endogenous retrovirus group MER34 member 1, envelope protein-coding 297-507 chr9 28712550 28712757 + 2 NA intron (NM_001354574, intron 2 of 5) MIR|SINE|MIR 6652 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 243-454 chr8 108757022 108757167 + 2 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 30500 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 451-98 chr18 6354629 6355036 + 2 NA intron (NM_001365765, intron 1 of 18) L1MA2|LINE|L1 4198 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 619-52 chr15 27479754 27480204 + 2 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -318660 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 258-152 chr16 25480507 25480654 + 2 NA Intergenic Intergenic -211379 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 233-164 chr2 52325481 52325691 + 2 NA intron (NR_135237, intron 8 of 10) MLT1E1A|LTR|ERVL-MaLR -45062 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 290-430 chr7 77981040 77981280 + 2 NA Intergenic Intergenic 141030 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 514-177 chr22 49031207 49031586 + 2 NA Intergenic Intergenic 164626 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 558-160 chr4 96087720 96088261 + 2 NA Intergenic Intergenic -222713 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 252-82 chr11 132077474 132077704 + 2 NA intron (NR_147849, intron 2 of 6) MIRb|SINE|MIR 166771 NM_001144059 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 323-516 chr7 108644831 108645063 + 2 NA Intergenic L2|LINE|L2 75073 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 265-296 chr5 10295424 10295616 + 2 NA intron (NM_138809, intron 1 of 5) MLT1A0|LTR|ERVL-MaLR 12382 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 176-117 chr5 152175761 152175916 + 2 NA intron (NR_109876, intron 1 of 2) HAL1|LINE|L1 216940 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 135-35 chr2 115745504 115745594 + 2 NA intron (NM_001321912, intron 10 of 25) intron (NM_001321912, intron 10 of 25) 401734 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 599-44 chr17 53976855 53977267 + 2 NA Intergenic AluY|SINE|Alu 154134 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 192-60 chr14 30261971 30262092 + 2 NA Intergenic Intergenic -297092 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 336-266 chr2 60122926 60123098 + 2 NA Intergenic Intergenic 260024 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 513-190 chr3 145455125 145455453 + 2 NA Intergenic Intergenic 613896 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 241-245 chr3 128224098 128224302 + 2 NA intron (NM_021937, intron 1 of 6) intron (NM_021937, intron 1 of 6) -70286 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 279-344 chr5 144489867 144490051 + 2 NA Intergenic Intergenic 284568 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 587-158 chr8 25142798 25143332 + 2 NA Intergenic AluSq2|SINE|Alu -41624 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 343-526 chr8 17484621 17484874 + 2 NA Intergenic HAL1b|LINE|L1 -12341 NM_001008539 6542 Hs.448520 NM_003046 ENSG00000003989 SLC7A2 ATRC2|CAT2|HCAT2 solute carrier family 7 member 2 protein-coding 132-57 chr4 163886151 163886236 + 2 NA intron (NM_001166373, intron 2 of 7) intron (NM_001166373, intron 2 of 7) -272659 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 221-35 chr10 58963040 58963222 + 2 NA Intergenic MER20|DNA|hAT-Charlie -36387 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 346-79 chr11 102097342 102097558 + 2 NA Intergenic Intergenic -12997 NM_001130145 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 152-87 chr7 53353593 53353730 + 2 NA Intergenic MLT2C1|LTR|ERVL 318028 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 692-12 chr11 23054329 23054868 + 2 NA Intergenic Intergenic -194124 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 251-383 chr8 36880907 36881143 + 2 NA intron (NM_001031836, intron 19 of 26) intron (NM_001031836, intron 19 of 26) 96651 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 441-186 chr4 186691909 186692252 + 2 NA intron (NM_005245, intron 2 of 26) intron (NM_005245, intron 2 of 26) 31776 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 474-256 chr6 132244554 132245007 + 2 NA Intergenic L2a|LINE|L2 110802 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 356-213 chr19 12192034 12192230 + 2 NA Intergenic AluY|SINE|Alu -2883 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 562-211 chr8 6391837 6392391 + 2 NA Intergenic Intergenic 14434 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 241-205 chr2 158275895 158276061 + 2 NA intron (NM_138803, intron 9 of 13) intron (NM_138803, intron 9 of 13) 109328 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 285-38 chr10 56470830 56471086 + 2 NA Intergenic Intergenic -109685 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 358-471 chr8 67717842 67718077 + 2 NA intron (NM_020361, intron 1 of 10) MLT1D|LTR|ERVL-MaLR 28401 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 322-374 chr4 71041009 71041247 + 2 NA Intergenic L1MC1|LINE|L1 47479 NM_000788 1633 Hs.709 NM_000788 ENSG00000156136 DCK - deoxycytidine kinase protein-coding 234-109 chr14 87220462 87220662 + 2 NA Intergenic Intergenic 314784 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 330-339 chr3 4320580 4320862 + 2 NA Intergenic LTR48|LTR|ERV1 17417 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 695-32 chr14 61200083 61200437 + 2 NA Intergenic Intergenic 81078 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 247-432 chr9 97427640 97427782 + 2 NA intron (NM_001302884, intron 1 of 15) intron (NM_001302884, intron 1 of 15) 15615 NM_001302884 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 653-63 chr2 5329686 5330293 + 2 NA Intergenic Intergenic 361129 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 515-93 chr18 6459046 6459459 + 2 NA Intergenic L1MB5|LINE|L1 -43993 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 735-67 chr5 12254528 12255197 + 2 NA Intergenic Intergenic -319995 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 319-456 chr6 61586109 61586376 + 2 NA intron (NR_146870, intron 14 of 15) intron (NR_146870, intron 14 of 15) 12112 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 196-40 chr10 116525785 116525940 + 2 NA Intergenic Intergenic -20069 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 381-7 chr1 64296810 64297036 + 2 NA Intergenic L1PA17|LINE|L1 93300 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 126-33 chr2 3215869 3215982 + 2 NA intron (NM_001330531, intron 3 of 7) intron (NM_001330531, intron 3 of 7) -89899 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 247-283 chr4 1702595 1702803 + 2 NA intron (NM_001306074, intron 2 of 6) intron (NM_001306074, intron 2 of 6) 9620 NM_001306075 7884 Hs.298345 NM_006527 ENSG00000163950 SLBP HBP stem-loop binding protein protein-coding 259-167 chr18 13342637 13342838 + 2 NA intron (NM_181482, intron 2 of 5) L1MB2|LINE|L1 64632 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 363-274 chr22 27078392 27078690 + 2 NA Intergenic L1PA13|LINE|L1 -18023 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 185-106 chr2 161883133 161883251 + 2 NA intron (NM_001354443, intron 10 of 25) intron (NM_001354443, intron 10 of 25) 191023 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 451-105 chr19 27725125 27725512 + 2 NA Intergenic ALR/Alpha|Satellite|centr -68113 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 349-13 chr1 60413282 60413625 + 2 NA Intergenic Intergenic 209232 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 528-87 chr14 82777251 82777610 + 2 NA Intergenic Intergenic 134798 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 429-238 chr5 77090902 77091183 + 2 NA intron (NR_024398, intron 2 of 3) L1MA9|LINE|L1 -3757 NR_138050 84327 Hs.584988 NM_032367 ENSG00000132846 ZBED3 - zinc finger BED-type containing 3 protein-coding 288-314 chr5 15867174 15867397 + 2 NA intron (NM_001278317, intron 2 of 3) L2b|LINE|L2 -67897 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 290-354 chr5 100195402 100195625 + 2 NA Intergenic L1MEc|LINE|L1 192741 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 411-178 chr3 46651290 46651607 + 2 NA Intergenic L1MCa|LINE|L1 38923 NM_001195442 100132146 Hs.679623 NM_001195442 ENSG00000283473 FAM240A - family with sequence similarity 240 member A protein-coding 354-132 chr14 46697688 46697958 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -46042 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 352-222 chr2 22360141 22360383 + 2 NA Intergenic Intergenic -176217 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 292-53 chr10 83283257 83283467 + 2 NA Intergenic Intergenic 393727 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 343-536 chr8 75569575 75569768 + 2 NA Intergenic Intergenic 29703 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 312-363 chr4 32703121 32703326 + 2 NA Intergenic Intergenic 352185 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 312-283 chr20 11641934 11642143 + 2 NA Intergenic Intergenic 228677 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 158-26 chr14 34614833 34614969 + 2 NA intron (NM_001366519, intron 2 of 12) intron (NM_001366519, intron 2 of 12) 15247 NM_021249 58533 Hs.276523 NM_021249 ENSG00000129515 SNX6 MSTP010|TFAF2 sorting nexin 6 protein-coding 363-333 chr4 81895744 81895979 + 2 NA Intergenic Intergenic -423954 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 472-347 chr9 106101800 106102108 + 2 NA Intergenic MER112|DNA|hAT-Charlie 407413 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 468-8 chr1 86622975 86623248 + 2 NA intron (NR_135837, intron 4 of 4) L1PBa1|LINE|L1 -11165 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 653-70 chr2 100642549 100643059 + 2 NA Intergenic Intergenic 39065 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 358-172 chr18 73926114 73926394 + 2 NA Intergenic Intergenic 221580 NM_001142958 201456 Hs.664011 NM_152676 ENSG00000141665 FBXO15 FBX15 F-box protein 15 protein-coding 385-353 chr7 37035934 37036231 + 2 NA intron (NM_001206480, intron 15 of 21) Tigger2|DNA|TcMar-Tigger 38286 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 598-145 chr8 118495479 118495926 + 2 NA intron (NM_001101676, intron 2 of 4) MIR|SINE|MIR -125299 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 369-43 chr10 76167083 76167277 + 2 NA intron (NM_001305581, intron 5 of 6) L1PREC2|LINE|L1 384419 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 347-384 chr5 30251574 30251823 + 2 NA Intergenic L1PA16|LINE|L1 371138 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 256-406 chr8 30022798 30022937 + 2 NA Intergenic L1MB5|LINE|L1 60197 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 273-79 chr11 55525548 55525758 + 2 NA Intergenic L1PA8|LINE|L1 -28616 NM_001001920 81309 NM_001001920 ENSG00000181939 OR4C15 OR11-127|OR11-134 olfactory receptor family 4 subfamily C member 15 protein-coding 243-119 chr14 26540679 26540870 + 2 NA intron (NM_001366393, intron 2 of 4) intron (NM_001366393, intron 2 of 4) 12656 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 273-414 chr7 14398538 14398749 + 2 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) -407218 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 406-254 chr5 178222733 178222988 + 2 NA exon (NM_153373, exon 7 of 13) exon (NM_153373, exon 7 of 13) 9942 NM_153373 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 251-301 chr5 44003251 44003445 + 2 NA Intergenic L2c|LINE|L2 -385384 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 202-27 chr10 43655417 43655597 + 2 NA intron (NR_038867, intron 1 of 4) MER77B|LTR|ERVL -6626 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 550-113 chr2 68908879 68909284 + 2 NA Intergenic Intergenic -37684 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 322-284 chr2 211982700 211982955 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 443533 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 241-4 chr1 18285595 18285777 + 2 NA intron (NM_032880, intron 2 of 9) intron (NM_032880, intron 2 of 9) 177888 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 370-138 chr14 38303809 38304128 + 2 NA Intergenic L1PA15|LINE|L1 -47875 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 328-620 chrUn_KI270422v1 933 1211 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 143-64 chr4 160286940 160287049 + 2 NA Intergenic Intergenic -509210 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 306-313 chr3 79951935 79952208 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -184073 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 692-98 chr8 78234802 78235464 + 2 NA Intergenic Intergenic -281207 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 262-330 chr4 153005128 153005357 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 62259 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 200-268 chr8 82154326 82154491 + 2 NA Intergenic AluY|SINE|Alu -312122 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 330-368 chr3 189359113 189359314 + 2 NA Intergenic Intergenic -118619 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 464-233 chr7 24703931 24704284 + 2 NA intron (NM_004403, intron 8 of 9) intron (NM_004403, intron 8 of 9) 53357 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 214-7 chr1 49426137 49426305 + 2 NA intron (NR_046839, intron 2 of 3) L1MC5|LINE|L1 45864 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 525-8 chr1 95939564 95940060 + 2 NA Intergenic Intergenic -52256 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 412-89 chr14 52107834 52108136 + 2 NA Intergenic Intergenic -38926 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 615-36 chr14 80428565 80429063 + 2 NA intron (NR_038355, intron 8 of 8) intron (NR_038355, intron 8 of 8) -197757 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 312-453 chr6 64074898 64075100 + 2 NA intron (NM_001292009, intron 32 of 43) intron (NM_001292009, intron 32 of 43) 268163 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 493-197 chr3 45368694 45369023 + 2 NA Intergenic L1M1|LINE|L1 -19718 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 441-35 chr10 120658565 120658995 + 2 NA Intergenic MIRb|SINE|MIR 60831 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 593-168 chrX 91438383 91438854 + 2 NA TTS (NM_080832) TTS (NM_080832) -3619 NR_110659 102724167 Hs.571694 NR_110659 ENSG00000234161 PABPC5-AS1 CXorf46 PABPC5 antisense RNA 1 ncRNA 456-223 chr4 63738089 63738412 + 2 NA Intergenic L1MC1|LINE|L1 671200 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 333-150 chr14 62748983 62749180 + 2 NA intron (NM_172375, intron 9 of 9) PRIMA41-int|LTR|ERV1 296377 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 348-510 chr8 34476248 34476556 + 2 NA Intergenic Intergenic -307519 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 405-185 chr20 54892462 54892776 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 417026 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 336-132 chr12 53016328 53016556 + 2 NA intron (NM_001330654, intron 1 of 13) intron (NM_001330654, intron 1 of 13) 9986 NM_001300821 1975 Hs.648394 NM_001417 ENSG00000063046 EIF4B EIF-4B|PRO1843 eukaryotic translation initiation factor 4B protein-coding 454-342 chr9 95567065 95567393 + 2 NA Intergenic Intergenic -50172 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 305-271 chr2 133868739 133868945 + 2 NA Intergenic L1M5|LINE|L1 -251093 NM_001371457 381-347 chr6 167987161 167987464 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 9765 NR_103750 100505879 Hs.225962 NM_014354 ENSG00000229921 KIF25-AS1 C6orf54|HGC6.1.1|NCRNA00300 KIF25 antisense RNA 1 ncRNA 318-277 chr2 99123748 99123986 + 2 NA intron (NM_001349014, intron 1 of 16) L1MB4|LINE|L1 17313 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 183-157 chr8 72073597 72073712 + 2 NA intron (NM_007332, intron 1 of 26) intron (NM_007332, intron 1 of 26) 1930 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 505-46 chr11 37656842 37657214 + 2 NA Intergenic Intergenic -281573 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 403-337 chrX 83969757 83970075 + 2 NA Intergenic L1PA10|LINE|L1 108770 NM_021118 1538 Hs.444230 NM_021118 ENSG00000183035 CYLC1 CYCL1 cylicin 1 protein-coding 471-225 chr6 53620479 53620773 + 2 NA Intergenic Intergenic -7754 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 514-158 chr2 181979619 181980019 + 2 NA intron (NR_048567, intron 2 of 4) Charlie8|DNA|hAT-Charlie -6005 NM_001080545 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 183-150 chr7 118086988 118087144 + 2 NA Intergenic Intergenic -97098 NM_016200 51691 Hs.655046 NM_016200 ENSG00000128534 LSM8 NAA38 LSM8 homolog, U6 small nuclear RNA associated protein-coding 642-108 chr8 121686185 121686643 + 2 NA Intergenic Intergenic -44974 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 410-177 chr22 28703368 28703689 + 2 NA exon (NM_001005735, exon 9 of 16) exon (NM_001005735, exon 9 of 16) -23663 NM_001145418 23331 Hs.387856 NM_015281 ENSG00000100154 TTC28 TPRBK tetratricopeptide repeat domain 28 protein-coding 539-48 chr12 23825666 23826147 + 2 NA intron (NM_152989, intron 6 of 17) intron (NM_152989, intron 6 of 17) 123764 NM_006940 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 434-285 chr8 87365301 87365583 + 2 NA intron (NM_173538, intron 10 of 10) intron (NM_173538, intron 10 of 10) 499027 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 126-60 chr7 87970342 87970431 + 2 NA intron (NM_001324421, intron 2 of 28) intron (NM_001324421, intron 2 of 28) 36135 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 359-196 chr18 7378293 7378542 + 2 NA Intergenic Intergenic 82589 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 368-7 chr1 49054535 49054824 + 2 NA intron (NM_001323575, intron 4 of 12) BLACKJACK|DNA|hAT-Blackjack -202732 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 434-68 chr12 120704852 120705261 + 2 NA Intergenic L1ME3G|LINE|L1 -5402 NM_001080533 84747 Hs.127610 NM_032661 ENSG00000175970 UNC119B POC7B unc-119 lipid binding chaperone B protein-coding 292-245 chr2 220536879 220537115 + 2 NA Intergenic MLT2A1|LTR|ERVL -630432 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 250-200 chr2 51389033 51389223 + 2 NA intron (NR_135237, intron 4 of 10) AluSz6|SINE|Alu 356527 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 301-243 chr2 215592850 215593074 + 2 NA Intergenic LTR84b|LTR|ERVL -125081 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 219-354 chr8 68919216 68919428 + 2 NA intron (NR_039986, intron 4 of 4) intron (NR_039986, intron 4 of 4) 184868 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 476-62 chr12 37980749 37981101 + 2 NA Intergenic ALR/Alpha|Satellite|centr -335849 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 291-405 chr7 49948741 49948918 + 2 NA intron (NM_001159878, intron 7 of 7) L1M3|LINE|L1 144417 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 497-205 chr4 86211211 86211586 + 2 NA intron (NM_001363657, intron 2 of 13) L1MB1|LINE|L1 91592 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 329-228 chr18 2437101 2437385 + 2 NA Intergenic Intergenic 134262 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 455-274 chr8 79567260 79567663 + 2 NA Intergenic Intergenic -43656 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 708-28 chr15 39613087 39613616 + 2 NA intron (NM_152597, intron 11 of 11) L1MA7|LINE|L1 32272 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 291-116 chr14 30841667 30841843 + 2 NA Intergenic Intergenic -32780 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 413-239 chr5 38896113 38896401 + 2 NA intron (NM_003999, intron 7 of 17) L1M1|LINE|L1 50245 NM_001323505 9180 Hs.120658 NM_003999 ENSG00000145623 OSMR IL-31R-beta|IL-31RB|OSMRB|PLCA1 oncostatin M receptor protein-coding 175-89 chr2 218699598 218699722 + 2 NA intron (NM_001369423, intron 26 of 26) intron (NM_001369423, intron 26 of 26) -11175 NM_014640 9654 Hs.471405 NM_014640 ENSG00000135912 TTLL4 - tubulin tyrosine ligase like 4 protein-coding 286-466 chr8 126054214 126054417 + 2 NA Intergenic L1ME1|LINE|L1 -103118 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 216-220 chr3 71832845 71833015 + 2 NA Intergenic Intergenic -47782 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 293-135 chr15 93267347 93267529 + 2 NA Intergenic AluSx|SINE|Alu 61372 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 279-8 chr1 58757732 58757999 + 2 NA Intergenic Intergenic 26182 NM_002228 3725 Hs.696684 NM_002228 ENSG00000177606 JUN AP-1|AP1|c-Jun|p39 Jun proto-oncogene, AP-1 transcription factor subunit protein-coding 251-365 chr7 31319150 31319301 + 2 NA Intergenic L2b|LINE|L2 21501 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 332-561 chr9 26106123 26106314 + 2 NA intron (NM_001004352, intron 3 of 6) HERVL-int|LTR|ERVL 39543 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 225-21 chr1 226241232 226241415 + 2 NA intron (NM_001366237, intron 10 of 13) L3|LINE|CR1 17659 NM_031944 83881 Hs.282079 NM_031944 ENSG00000185155 MIXL1 MILD1|MIX|MIXL Mix paired-like homeobox protein-coding 785-37 chr3 156875120 156875671 + 2 NA intron (NM_001004316, intron 3 of 12) L1PB1|LINE|L1 49042 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 157-44 chr15 87520624 87520749 + 2 NA Intergenic MIR|SINE|MIR -56243 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 307-206 chr18 77392710 77392909 + 2 NA Intergenic Intergenic 142961 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 259-38 chr10 22151904 22152083 + 2 NA Intergenic L1M6|LINE|L1 57990 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 168-84 chr4 187808514 187808632 + 2 NA Intergenic Intergenic -135932 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 200-122 chr2 29893665 29893850 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 27829 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 392-78 chr13 91571713 91571984 + 2 NA intron (NM_004466, intron 2 of 7) (TA)n|Simple_repeat|Simple_repeat 173227 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 313-341 chr3 61166345 61166628 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 84966 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 327-247 chr2 39743245 39743545 + 2 NA intron (NR_135664, intron 11 of 11) intron (NR_135664, intron 11 of 11) 35863 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 282-92 chr12 23576183 23576358 + 2 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) 8316 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 262-92 chr12 18097448 18097654 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -7358 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 481-226 chr4 101486310 101486635 + 2 NA Intergenic L1MC1|LINE|L1 138695 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 199-3 chr1 40545794 40545897 + 2 NA intron (NM_152373, intron 4 of 4) intron (NM_152373, intron 4 of 4) 14208 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 182-10 chr1 157865422 157865528 + 2 NA Intergenic Intergenic -23667 NM_005894 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 531-164 chr3 155261345 155261713 + 2 NA Intergenic Intergenic 20584 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 505-223 chr4 108123804 108124212 + 2 NA intron (NM_001130713, intron 3 of 10) AluJr|SINE|Alu 42789 NM_001166119 51176 Hs.743478 NM_016269 ENSG00000138795 LEF1 LEF-1|TCF10|TCF1ALPHA|TCF7L3 lymphoid enhancer binding factor 1 protein-coding 756-4 chr10 33394782 33395198 + 2 NA Intergenic AluJo|SINE|Alu -60085 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 378-357 chr5 175586700 175586896 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -71273 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 223-95 chr15 33496980 33497171 + 2 NA intron (NM_001243996, intron 2 of 102) intron (NM_001243996, intron 2 of 102) 186108 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 481-30 chr10 57114105 57114478 + 2 NA Intergenic Intergenic 190268 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 577-175 chr6 129675755 129676188 + 2 NA intron (NM_033515, intron 1 of 14) MamRep1527|LTR|LTR 34206 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 377-181 chr19 29430289 29430637 + 2 NA intron (NR_040029, intron 1 of 9) MSTB|LTR|ERVL-MaLR 95289 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 364-453 chr8 126278675 126279001 + 2 NA Intergenic Intergenic -46657 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 195-144 chr3 73635680 73635821 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -10809 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 430-96 chr15 67271928 67272285 + 2 NA intron (NM_001031715, intron 3 of 20) L1MA4|LINE|L1 -16908 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 292-82 chr11 93999507 93999768 + 2 NA Intergenic Intergenic -21717 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 339-471 chr5 155694492 155694783 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -632120 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 340-149 chr14 60043021 60043325 + 2 NA intron (NR_075071, intron 29 of 32) L1M2|LINE|L1 -48738 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 700-14 chr10 115833289 115833833 + 2 NA intron (NM_207303, intron 27 of 28) MIR|SINE|MIR 361228 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 413-111 chr17 33031911 33032245 + 2 NA intron (NM_183377, intron 3 of 9) L1ME2|LINE|L1 39227 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 501-269 chr8 117737389 117737803 + 2 NA Intergenic Intergenic 183317 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 236-341 chr7 137552076 137552232 + 2 NA intron (NM_001321710, intron 20 of 32) intron (NM_001321710, intron 20 of 32) -208421 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 547-218 chr7 46722057 46722561 + 2 NA Intergenic L1PREC2|LINE|L1 -25187 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 409-259 chr6 4132324 4132578 + 2 NA intron (NM_206836, intron 2 of 9) MER77B|LTR|ERVL 3017 NM_001166010 10455 Hs.15250 NM_006117 ENSG00000198721 ECI2 ACBD2|DRS-1|DRS1|HCA88|PECI|dJ1013A10.3 enoyl-CoA delta isomerase 2 protein-coding 958-9 chr14 31743862 31744619 + 2 NA intron (NM_001201574, intron 1 of 5) intron (NM_001201574, intron 1 of 5) 29671 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 222-307 chr5 114091386 114091560 + 2 NA Intergenic Intergenic -270597 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 334-546 chr8 109432340 109432572 + 2 NA intron (NM_177531, intron 27 of 77) L1ME3Cz|LINE|L1 69995 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 419-27 chr10 11358615 11358897 + 2 NA Intergenic Intergenic -14082 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 437-27 chr10 75382258 75382640 + 2 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -19079 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 312-451 chr6 61568137 61568329 + 2 NA intron (NR_146870, intron 14 of 15) L1P4|LINE|L1 -5897 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 525-110 chr2 23167963 23168412 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -216992 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 210-33 chr10 60409857 60410062 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -20084 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 303-340 chr5 4681185 4681459 + 2 NA Intergenic L1MA9|LINE|L1 -92159 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 280-159 chr17 31556978 31557232 + 2 NA Intergenic Intergenic -2891 NR_029710 406968 NR_029710 ENSG00000207614 MIR193A MIRN193|MIRN193A|mir-193a microRNA 193a ncRNA 289-212 chr2 25481749 25481945 + 2 NA intron (NM_001351395, intron 10 of 20) MER5A|DNA|hAT-Charlie -139257 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 567-83 chr2 48996026 48996491 + 2 NA intron (NM_000145, intron 4 of 9) intron (NM_000145, intron 4 of 9) -63345 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 172-49 chr18 44878480 44878614 + 2 NA intron (NM_015559, intron 3 of 5) intron (NM_015559, intron 3 of 5) 91619 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 450-74 chr13 96697379 96697774 + 2 NA intron (NM_153456, intron 1 of 1) HAL1ME|LINE|L1 270347 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 252-124 chr14 103997327 103997541 + 2 NA intron (NM_153046, intron 12 of 35) L2a|LINE|L2 -54905 NM_001257268 647286 Hs.632325 NM_001257268 ENSG00000227729 RD3L TDRD9-AS1|TDRD9AS1 retinal degeneration 3 like protein-coding 193-70 chr16 14175439 14175595 + 2 NA intron (NM_001308142, intron 3 of 16) L1ME2z|LINE|L1 -11169 NM_001365413 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 248-56 chr10 106903940 106904144 + 2 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 260664 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 141-70 chr5 17722314 17722446 + 2 NA Intergenic Intergenic -66742 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 156-16 chr11 20805927 20806023 + 2 NA intron (NM_001288714, intron 3 of 18) L1M1|LINE|L1 136389 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 309-354 chr3 94946249 94946489 + 2 NA intron (NR_015400, intron 1 of 7) L1PA8A|LINE|L1 8106 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 504-258 chr8 82588084 82588461 + 2 NA Intergenic L1MC2|LINE|L1 -323832 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 412-134 chr18 38378541 38378779 + 2 NA Intergenic L1ME1|LINE|L1 721525 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 206-116 chr2 64428408 64428562 + 2 NA Intergenic L1MDa|LINE|L1 -25677 NM_014181 29094 Hs.372208 NM_014181 ENSG00000119862 LGALSL GRP|HSPC159 galectin like protein-coding 743-12 chr10 59166761 59167291 + 2 NA Intergenic Intergenic 9438 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 318-19 chr1 80849911 80850169 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 208753 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 410-246 chr5 95527096 95527500 + 2 NA intron (NM_014639, intron 13 of 42) intron (NM_014639, intron 13 of 42) 27707 NM_014639 9652 Hs.482868 NM_014639 ENSG00000198677 TTC37 KIAA0372|Ski3|THES tetratricopeptide repeat domain 37 protein-coding 406-64 chr12 118710585 118710952 + 2 NA Intergenic L2b|LINE|L2 50911 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 342-522 chr8 111494628 111494867 + 2 NA Intergenic Intergenic 118108 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 229-67 chr11 88644616 88644811 + 2 NA intron (NM_001143831, intron 3 of 8) LTR85b|LTR|Gypsy? 140137 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 337-524 chr7 81917482 81917754 + 2 NA Intergenic L1MC3|LINE|L1 -91559 NR_110077 101927356 Hs.571348 NR_110076 ENSG00000223770 LOC101927356 - uncharacterized LOC101927356 ncRNA 576-13 chr1 246969630 246970028 + 2 NA intron (NM_001204221, intron 4 of 5) MSTA|LTR|ERVL-MaLR -37881 NM_001323343 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 336-169 chr14 68520539 68520841 + 2 NA intron (NM_001321818, intron 10 of 10) L2a|LINE|L2 108097 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 369-275 chr3 146916988 146917299 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger -4780 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 298-233 chr2 144240406 144240594 + 2 NA intron (NM_001354354, intron 1 of 12) intron (NM_001354354, intron 1 of 12) -3161 NM_024659 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 135-12 chr11 78171319 78171445 + 2 NA 3' UTR (NM_001029859, exon 2 of 2) 3' UTR (NM_001029859, exon 2 of 2) 17244 NM_001029859 283219 Hs.528439 NM_001029859 ENSG00000188997 KCTD21 KCASH2 potassium channel tetramerization domain containing 21 protein-coding 197-92 chr2 39941807 39941992 + 2 NA intron (NR_038441, intron 2 of 4) L2a|LINE|L2 24265 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 261-116 chr14 100997042 100997206 + 2 NA intron (NR_146000, intron 48 of 50) intron (NR_146000, intron 48 of 50) 3888 NR_003224 767612 NR_003224 ENSG00000200089 SNORD114-31 14q(II-31) small nucleolar RNA, C/D box 114-31 snoRNA 390-223 chr22 29250623 29250941 + 2 NA intron (NM_001267895, intron 13 of 14) AluSx|SINE|Alu 17199 NR_138044 25807 Hs.106730 NM_012265 ENSG00000100263 RHBDD3 C22orf3|HS984G1A|PTAG rhomboid domain containing 3 protein-coding 425-248 chr5 163032790 163033149 + 2 NA Intergenic Intergenic -404602 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 330-298 chr2 160472711 160472937 + 2 NA intron (NM_002897, intron 1 of 13) intron (NM_002897, intron 1 of 13) 20983 NM_002897 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 196-44 chr10 126838356 126838520 + 2 NA Intergenic Intergenic -66971 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 447-19 chr1 239010109 239010451 + 2 NA Intergenic Intergenic -376288 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 368-430 chr7 88419595 88419802 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -112804 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 374-312 chr5 82509457 82509796 + 2 NA Intergenic Intergenic 230164 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 523-90 chr15 94642840 94643216 + 2 NA Intergenic L1MEd|LINE|L1 -212335 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 300-372 chr5 148482881 148483095 + 2 NA non-coding (NR_104445, exon 8 of 8) non-coding (NR_104445, exon 8 of 8) 99030 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 1286-9 chr8 91518263 91519275 + 2 NA Intergenic Intergenic 269450 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 348-253 chr2 228849879 228850094 + 2 NA Intergenic L1MC4|LINE|L1 -238591 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 237-302 chr5 97282623 97282815 + 2 NA Intergenic L1PA14|LINE|L1 -99472 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 286-391 chr6 68890466 68890718 + 2 NA intron (NM_001704, intron 3 of 31) intron (NM_001704, intron 3 of 31) 255310 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 296-242 chr2 147515219 147515464 + 2 NA Intergenic Intergenic -329176 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 421-165 chr20 18356001 18356243 + 2 NA Intergenic L1MB3|LINE|L1 -22927 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 321-103 chr11 83300573 83300803 + 2 NA Intergenic Intergenic -14281 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 292-297 chr3 176683498 176683740 + 2 NA Intergenic Intergenic -48087 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 457-167 chr3 175540744 175541160 + 2 NA intron (NM_207015, intron 9 of 13) intron (NM_207015, intron 9 of 13) 171412 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 347-280 chr21 17777225 17777559 + 2 NA TTS (NR_038870) TTS (NR_038870) 15117 NR_038870 246312 Hs.473425 NR_038870 ENSG00000240770 C21orf91-OT1 D21S2089E|NCRNA00285 C21orf91 overlapping transcript 1 ncRNA 537-54 chr12 76525365 76525887 + 2 NA intron (NM_001003712, intron 1 of 22) intron (NM_001003712, intron 1 of 22) 34145 NM_020841 114882 Hs.430849 NM_020841 ENSG00000091039 OSBPL8 MST120|MSTP120|ORP8|OSBP10 oxysterol binding protein like 8 protein-coding 570-91 chr17 33984009 33984504 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 172550 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 265-66 chr11 114569402 114569657 + 2 NA Intergenic Intergenic -9648 NM_152315 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 288-388 chr6 163618273 163618526 + 2 NA Intergenic Intergenic 53085 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 278-287 chr3 138270131 138270288 + 2 NA intron (NM_001282342, intron 14 of 19) intron (NM_001282342, intron 14 of 19) 59642 NM_001349023 347736 Hs.660992 NM_178130 ENSG00000181322 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 538-237 chr8 105360004 105360533 + 2 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 40725 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 369-376 chr7 4463262 4463488 + 2 NA Intergenic L1ME4a|LINE|L1 -218920 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 586-161 chr8 133951560 133951935 + 2 NA Intergenic Intergenic 65251 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 220-65 chr11 16431927 16432106 + 2 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -23160 NM_001145811 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 553-42 chr12 21717766 21718168 + 2 NA Intergenic Intergenic 56739 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 350-411 chr5 123818937 123819251 + 2 NA Intergenic Intergenic 273677 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 242-436 chr9 94687656 94687828 + 2 NA Intergenic Intergenic -38927 NM_032823 84909 Hs.434253 NM_032823 ENSG00000148120 AOPEP AP-O|APO|C90RF3|C9orf3|ONPEP aminopeptidase O (putative) protein-coding 393-43 chr10 93172060 93172389 + 2 NA Intergenic L1MEg|LINE|L1 98331 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 307-390 chr5 107798580 107798805 + 2 NA Intergenic Intergenic -127755 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 251-187 chr2 146599456 146599629 + 2 NA Intergenic LTR41C|LTR|ERVL 12485 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 482-11 chr1 94750492 94750866 + 2 NA intron (NR_160781, intron 1 of 4) Ricksha_a|DNA|MULE-MuDR -4779 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 357-305 chr4 33366909 33367226 + 2 NA Intergenic Intergenic 672826 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 201-240 chr8 99322360 99322492 + 2 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 214304 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 377-47 chr10 60962683 60963002 + 2 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) -18116 NM_001350905 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 277-421 chr8 111889102 111889240 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 512532 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 723-84 chrX 75710715 75711106 + 2 NA Intergenic L1PA4|LINE|L1 32169 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 283-8 chr1 66024603 66024785 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) 26024 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 296-271 chr20 60275729 60275921 + 2 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -32649 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 331-21 chr1 118468400 118468678 + 2 NA Intergenic L2a|LINE|L2 -283311 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 308-44 chr1 244264090 244264365 + 2 NA Intergenic L1M5|LINE|L1 -88408 NM_001012970 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 281-442 chr8 122067127 122067304 + 2 NA Intergenic Intergenic -425775 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 509-153 chr3 108653954 108654457 + 2 NA exon (NM_014648, exon 19 of 33) exon (NM_014648, exon 19 of 33) 64483 NM_014648 9666 Hs.409210 NM_014648 ENSG00000198919 DZIP3 PPP1R66|UURF2|hRUL138 DAZ interacting zinc finger protein 3 protein-coding 443-282 chr7 71550119 71550545 + 2 NA intron (NM_022479, intron 5 of 10) L1ME4a|LINE|L1 -242562 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 574-193 chr9 70526909 70527261 + 2 NA Intergenic L3|LINE|CR1 -112428 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 370-202 chr19 36343620 36343934 + 2 NA intron (NM_001297619, intron 4 of 4) MSTC|LTR|ERVL-MaLR -12059 NR_038278 100506930 Hs.595153 NR_038278 ENSG00000232677 LINC00665 - long intergenic non-protein coding RNA 665 ncRNA 591-172 chr8 142014263 142014678 + 2 NA Intergenic Intergenic -161869 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 216-82 chr13 43994277 43994459 + 2 NA Intergenic Intergenic -27967 NR_026955 121838 Hs.201441 NR_026955 LINC00284 NCRNA00284 long intergenic non-protein coding RNA 284 ncRNA 475-165 chr21 26519182 26519592 + 2 NA TTS (NR_135516) TTS (NR_135516) 53899 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 397-21 chr1 233800363 233800686 + 2 NA Intergenic Intergenic -104152 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 285-235 chr2 228862261 228862427 + 2 NA Intergenic Intergenic -250949 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 215-115 chr17 69720966 69721133 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) 127062 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 334-167 chr15 26687796 26688008 + 2 NA intron (NM_001278631, intron 3 of 9) intron (NM_001278631, intron 3 of 9) 28863 NM_001191320 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 501-284 chrX 20841656 20841976 + 2 NA Intergenic Intergenic -532602 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 471-236 chr6 124198251 124198623 + 2 NA intron (NM_001300737, intron 2 of 7) L1MCc|LINE|L1 -84568 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 326-342 chr3 89452617 89452910 + 2 NA intron (NM_005233, intron 15 of 16) L1M3|LINE|L1 345142 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 304-306 chr20 60332408 60332603 + 2 NA Intergenic MER21A|LTR|ERVL 24031 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 597-28 chr10 91840442 91840875 + 2 NA exon (NM_025235, exon 14 of 27) exon (NM_025235, exon 14 of 27) 42232 NM_025235 80351 Hs.329327 NM_025235 ENSG00000107854 TNKS2 ARTD6|PARP-5b|PARP-5c|PARP5B|PARP5C|TANK2|TNKL|pART6 tankyrase 2 protein-coding 240-285 chr3 57025849 57026021 + 2 NA intron (NM_001128615, intron 2 of 12) intron (NM_001128615, intron 2 of 12) -34729 NM_181727 353324 Hs.129794 NM_181727 ENSG00000186451 SPATA12 SRG5 spermatogenesis associated 12 protein-coding 488-213 chr5 82132614 82133011 + 2 NA intron (NM_031482, intron 3 of 7) L1PA7|LINE|L1 145542 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 265-224 chr21 24076296 24076441 + 2 NA Intergenic Intergenic 245009 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 401-64 chr12 41545115 41545481 + 2 NA intron (NM_001164595, intron 5 of 9) L2c|LINE|L2 107559 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 465-195 chr4 15078475 15078770 + 2 NA intron (NR_125911, intron 2 of 5) L1MB1|LINE|L1 76141 NM_182485 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 447-147 chr2 214977552 214977910 + 2 NA intron (NR_103740, intron 35 of 54) intron (NR_103740, intron 35 of 54) 54355 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 317-487 chr8 92235010 92235318 + 2 NA Intergenic Intergenic -131779 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 314-107 chr11 108721581 108721821 + 2 NA intron (NM_004398, intron 12 of 17) intron (NM_004398, intron 12 of 17) 56632 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 402-240 chr4 92922453 92922740 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 618197 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 264-364 chr6 80898294 80898495 + 2 NA Intergenic L2a|LINE|L2 791723 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 275-233 chr21 45758976 45759244 + 2 NA intron (NM_001348243, intron 3 of 15) L1MB7|LINE|L1 11096 NM_001348243 54039 Hs.474049 NM_020528 ENSG00000183570 PCBP3 ALPHA-CP3|PCBP3-OT1|PCBP3OT poly(rC) binding protein 3 protein-coding 365-337 chr5 165512394 165512695 + 2 NA Intergenic MIRb|SINE|MIR 1042265 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 269-165 chr18 54555802 54556058 + 2 NA Intergenic L1MEg|LINE|L1 -31829 NM_001307955 284254 Hs.376146 NM_173629 ENSG00000178690 DYNAP C18orf26 dynactin associated protein protein-coding 283-270 chr21 16297850 16298059 + 2 NA intron (NR_027790, intron 4 of 7) THE1C|LTR|ERVL-MaLR -13186 NR_145757 109617014 NR_145757 ENSG00000201025 SNORD74B - small nucleolar RNA, C/D box 74B snoRNA 407-239 chr5 6192048 6192366 + 2 NA Intergenic Intergenic 145085 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 515-72 chr14 75556013 75556371 + 2 NA Intergenic Intergenic -22428 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 405-174 chr20 6799396 6799755 + 2 NA Intergenic Intergenic 31889 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 203-154 chr3 137019821 137019992 + 2 NA Intergenic Intergenic 61923 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 261-120 chr15 46985856 46986010 + 2 NA Intergenic L1P3|LINE|L1 -198156 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 391-95 chr14 29030327 29030688 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -244720 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 432-231 chr5 126099630 126099943 + 2 NA Intergenic Intergenic -79791 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 237-86 chr12 129168092 129168282 + 2 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) -40414 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 489-181 chr3 168004035 168004519 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 91647 NM_001308155 27333 Hs.143600 NM_014498 ENSG00000173905 GOLIM4 GIMPC|GOLPH4|GPP130|P138 golgi integral membrane protein 4 protein-coding 443-311 chrX 43198993 43199349 + 2 NA intron (NR_110387, intron 4 of 5) L1PA11|LINE|L1 22177 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 503-262 chr7 50654399 50654799 + 2 NA intron (NM_001350816, intron 6 of 17) intron (NM_001350816, intron 6 of 17) 50702 NM_001001550 2887 Hs.164060 NM_005311 ENSG00000106070 GRB10 GRB-IR|Grb-10|IRBP|MEG1|RSS growth factor receptor bound protein 10 protein-coding 205-127 chr18 72000070 72000225 + 2 NA Intergenic Intergenic -217921 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 316-393 chr4 55323141 55323434 + 2 NA Intergenic Intergenic -22955 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 386-375 chr9 29378726 29379062 + 2 NA Intergenic Harlequin-int|LTR|ERV1 -165293 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 209-292 chr7 21863688 21863810 + 2 NA intron (NM_001277115, intron 69 of 81) intron (NM_001277115, intron 69 of 81) 82150 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 372-21 chr1 111548218 111548544 + 2 NA intron (NM_001370216, intron 1 of 7) HSMAR2|DNA|TcMar-Mariner 6372 NM_001370216 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 431-217 chr5 7963206 7963552 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 94231 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 392-297 chr7 16170224 16170610 + 2 NA intron (NM_001101426, intron 9 of 9) LTR12E|LTR|ERV1 -40069 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 222-140 chr18 238190 238406 + 2 NA intron (NM_005131, intron 11 of 20) intron (NM_005131, intron 11 of 20) 29749 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 211-119 chr18 21919260 21919449 + 2 NA Intergenic L1M5|LINE|L1 -87948 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 153-101 chr8 140151450 140151592 + 2 NA intron (NM_001160372, intron 17 of 22) MLT1B|LTR|ERVL-MaLR -50986 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 157-65 chr2 115387020 115387147 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 43268 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 272-407 chr6 163042099 163042360 + 2 NA TTS (NR_110871) TTS (NR_110871) 11932 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 355-493 chr8 54197815 54198119 + 2 NA Intergenic L1MA4|LINE|L1 62726 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 391-388 chrX 85590730 85591048 + 2 NA Intergenic Intergenic -211224 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 187-155 chr7 25675382 25675539 + 2 NA intron (NR_157808, intron 1 of 4) L1MC2|LINE|L1 -4729 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 480-181 chr22 25249701 25250085 + 2 NA Intergenic L1MB5|LINE|L1 30254 NM_000496 1415 Hs.373074 NM_000496 ENSG00000244752 CRYBB2 CCA2|CRYB2|CRYB2A|CTRCT3|D22S665 crystallin beta B2 protein-coding 328-562 chr8 70898839 70899022 + 2 NA Intergenic AluJb|SINE|Alu 229591 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 259-265 chr3 172890266 172890474 + 2 NA intron (NM_031955, intron 10 of 10) intron (NM_031955, intron 10 of 10) 139368 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 268-28 chr10 14721969 14722155 + 2 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) 52835 NM_031453 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 249-97 chr12 118837578 118837747 + 2 NA Intergenic Intergenic -4126 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 251-354 chr6 152075923 152076155 + 2 NA intron (NM_001328100, intron 6 of 6) intron (NM_001328100, intron 6 of 6) 92248 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 180-40 chr13 42444676 42444817 + 2 NA intron (NR_135319, intron 3 of 3) intron (NR_135319, intron 3 of 3) 19854 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 547-259 chr9 18650507 18650949 + 2 NA intron (NM_052866, intron 7 of 12) intron (NM_052866, intron 7 of 12) 77422 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 345-512 chr8 29566888 29567192 + 2 NA Intergenic MLT2B4|LTR|ERVL 181069 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 236-225 chr3 77395533 77395712 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 297610 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 447-40 chr11 55033061 55033372 + 2 NA Intergenic ALR/Alpha|Satellite|centr -228939 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 306-475 chr7 67433887 67434048 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 97991 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 555-82 chr2 2861361 2861907 + 2 NA Intergenic Intergenic 264392 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 609-77 chr3 96288461 96288959 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -71254 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 330-243 chr19 43949626 43949938 + 2 NA Intergenic L1M1|LINE|L1 -1441 NM_001297588 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 333-623 chrX 70662807 70663112 + 2 NA intron (NM_001003811, intron 17 of 30) L1ME1|LINE|L1 183336 NR_145758 109617015 NR_145758 ENSG00000280704 SNORD3E - small nucleolar RNA, C/D box 3E snoRNA 247-378 chr7 34142686 34142837 + 2 NA intron (NM_133468, intron 14 of 15) intron (NM_133468, intron 14 of 15) 237222 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 202-151 chr21 36573861 36574056 + 2 NA intron (NM_001146077, intron 1 of 2) L1ME2|LINE|L1 2611 NM_001146077 23562 Hs.660278 NM_012130 ENSG00000159261 CLDN14 DFNB29 claudin 14 protein-coding 565-88 chr2 149645602 149645938 + 2 NA intron (NR_110240, intron 1 of 2) intron (NR_110240, intron 1 of 2) -57995 NM_015702 27249 Hs.5324 NM_015702 ENSG00000168288 MMADHC C2orf25|CL25022|cblD metabolism of cobalamin associated D protein-coding 389-134 chr17 40765018 40765220 + 2 NA Intergenic MIRb|SINE|MIR 7040 NM_181539 353288 Hs.592133 NM_181539 ENSG00000186393 KRT26 CK26|K25|K25IRS2|K26|KRT25B keratin 26 protein-coding 300-270 chr3 46301277 46301489 + 2 NA Intergenic Intergenic -52361 NM_001123041 729230 Hs.511794 NM_001123041 ENSG00000121807 CCR2 CC-CKR-2|CCR-2|CCR2A|CCR2B|CD192|CKR2|CKR2A|CKR2B|CMKBR2|MCP-1-R C-C motif chemokine receptor 2 protein-coding 592-23 chr11 15686536 15686984 + 2 NA intron (NM_001293172, intron 1 of 2) L2c|LINE|L2 42875 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 421-146 chr2 109380046 109380324 + 2 NA intron (NM_001099289, intron 3 of 9) intron (NM_001099289, intron 3 of 9) -66560 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 375-359 chr6 119397594 119397796 + 2 NA Intergenic MER52-int|LTR|ERV1 -47934 NM_005907 4121 Hs.102788 NM_005907 ENSG00000111885 MAN1A1 HUMM3|HUMM9|MAN9 mannosidase alpha class 1A member 1 protein-coding 266-208 chr2 206453951 206454208 + 2 NA intron (NM_003812, intron 2 of 25) intron (NM_003812, intron 2 of 25) 10547 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 465-75 chr13 93008808 93009210 + 2 NA Intergenic Intergenic -36332 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 240-34 chr10 19452848 19453004 + 2 NA intron (NM_001142308, intron 29 of 39) MIR|SINE|MIR 275624 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 347-454 chr7 12745489 12745811 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 58017 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 201-95 chr16 31499538 31499707 + 2 NA intron (NM_022744, intron 3 of 12) MamTip2|DNA|hAT-Tip100 8769 NM_022744 64755 Hs.9003 NM_022744 ENSG00000140688 C16orf58 RUS chromosome 16 open reading frame 58 protein-coding 565-25 chr11 55006686 55007007 + 2 NA Intergenic ALR/Alpha|Satellite|centr -255309 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 271-454 chr8 118659496 118659752 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -37661 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 236-360 chr8 113456321 113456551 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -19497 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 368-470 chr8 132365801 132366062 + 2 NA intron (NM_004519, intron 1 of 14) AluJr|SINE|Alu 81331 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 805-9 chr12 90384377 90384863 + 2 NA Intergenic MER75|DNA|PiggyBac 91302 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 318-273 chr2 80145888 80146182 + 2 NA intron (NM_001282598, intron 7 of 17) MLT1G1|LTR|ERVL-MaLR 158717 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 185-133 chr3 36519391 36519501 + 2 NA intron (NM_001292049, intron 6 of 8) MIRc|SINE|MIR 138959 NM_001292049 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 307-43 chr10 26340762 26340949 + 2 NA Intergenic Intergenic -97486 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 697-23 chr14 82301616 82302113 + 2 NA Intergenic L1MC1|LINE|L1 -340768 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 337-475 chr6 17496660 17496950 + 2 NA intron (NM_001363533, intron 4 of 9) Tigger10|DNA|TcMar-Tigger 14460 NR_110855 101928491 Hs.622876 NR_110855 LOC101928491 - uncharacterized LOC101928491 ncRNA 253-188 chr2 98498985 98499162 + 2 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 53063 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 240-424 chr8 126095080 126095239 + 2 NA Intergenic LTR57|LTR|ERVL -143962 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 319-564 chr9 599201 599423 + 2 NA intron (NM_001256877, intron 2 of 12) AluSp|SINE|Alu -87455 NM_001354336 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 357-284 chr3 133721791 133721995 + 2 NA intron (NM_001354703, intron 7 of 22) AluJb|SINE|Alu -24500 NM_001354704 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 121-74 chr9 103642070 103642132 + 2 NA Intergenic L2c|LINE|L2 -317068 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 330-356 chr3 106173515 106173698 + 2 NA Intergenic Intergenic -304205 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 633-75 chr22 26430688 26431289 + 2 NA intron (NM_020437, intron 1 of 3) intron (NM_020437, intron 1 of 3) 1728 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 286-349 chr5 33132983 33133176 + 2 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -96656 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 463-247 chr6 36005343 36005691 + 2 NA intron (NM_001193476, intron 3 of 19) L1MC4a|LINE|L1 18983 NM_138718 116369 Hs.435836 NM_052961 ENSG00000112053 SLC26A8 SPGF3|TAT1 solute carrier family 26 member 8 protein-coding 569-142 chr5 30218889 30219258 + 2 NA Intergenic AluJr|SINE|Alu 338513 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 343-446 chr5 120285554 120285754 + 2 NA Intergenic L1ME4a|LINE|L1 -178624 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 215-169 chr20 9526486 9526660 + 2 NA intron (NM_001199897, intron 4 of 4) intron (NM_001199897, intron 4 of 4) -11575 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 298-120 chr14 62103093 62103268 + 2 NA 3' UTR (NM_001367650, exon 7 of 7) 3' UTR (NM_001367650, exon 7 of 7) -14177 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 451-201 chr6 117171573 117171904 + 2 NA Intergenic L1MC3|LINE|L1 -93820 NM_153453 245806 Hs.99324 NM_153453 ENSG00000170162 VGLL2 VGL2|VITO1 vestigial like family member 2 protein-coding 283-222 chr2 40067098 40067310 + 2 NA intron (NR_038441, intron 2 of 4) L1PA13|LINE|L1 149570 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 705-94 chr7 145944131 145944681 + 2 NA Intergenic L1MA4A|LINE|L1 -829865 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 363-214 chr2 81704783 81705074 + 2 NA Intergenic MER53|DNA|hAT -237982 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 243-232 chr2 125036843 125037033 + 2 NA Intergenic L1PB2|LINE|L1 1011651 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 447-249 chr7 52847539 52847932 + 2 NA Intergenic (ACATC)n|Simple_repeat|Simple_repeat -187898 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 316-539 chr8 47138767 47139031 + 2 NA Intergenic L1MC4|LINE|L1 -50408 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 244-73 chr12 92529071 92529228 + 2 NA Intergenic Intergenic 62470 NR_144532 100507616 Hs.339918 NR_144532 LINC02397 - long intergenic non-protein coding RNA 2397 ncRNA 324-405 chr4 135150866 135151104 + 2 NA Intergenic L2a|LINE|L2 -27426 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 335-365 chr3 142513321 142513588 + 2 NA intron (NM_001354579, intron 25 of 45) intron (NM_001354579, intron 25 of 45) 65279 NM_001354579 545 Hs.271791 NM_001184 ENSG00000175054 ATR FCTCS|FRP1|MEC1|SCKL|SCKL1 ATR serine/threonine kinase protein-coding 245-43 chr10 51336507 51336686 + 2 NA intron (NM_001098512, intron 2 of 17) MER117|DNA|hAT-Charlie 37023 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 351-227 chr2 117123725 117123954 + 2 NA Intergenic L2a|LINE|L2 -690852 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 337-174 chr15 56341661 56341991 + 2 NA Intergenic Intergenic -23598 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 735-28 chr16 29013546 29014079 + 2 NA Intergenic AluJo|SINE|Alu 28760 NM_014387 27040 Hs.632179 NM_014387 ENSG00000213658 LAT IMD52|LAT1|pp36 linker for activation of T cells protein-coding 368-123 chr13 22855615 22855956 + 2 NA Intergenic Intergenic 42396 NR_033774 646201 Hs.729338 NR_033774 BASP1P1 - BASP1 pseudogene 1 pseudo 331-96 chr11 88506720 88506961 + 2 NA non-coding (NR_049724, exon 1 of 6) non-coding (NR_049724, exon 1 of 6) 2264 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 414-271 chr5 111809342 111809576 + 2 NA intron (NM_001142474, intron 2 of 3) MSTB2|LTR|ERVL-MaLR -51241 NM_001142476 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 234-24 chr1 225335453 225335608 + 2 NA intron (NM_001367479, intron 66 of 85) (ACATAT)n|Simple_repeat|Simple_repeat 92508 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 442-17 chr1 173029013 173029291 + 2 NA Intergenic Intergenic 21811 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 606-174 chr9 103122809 103123204 + 2 NA Intergenic MER67C|LTR|ERV1 127673 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 206-142 chr20 49426805 49426985 + 2 NA intron (NM_004975, intron 1 of 1) intron (NM_004975, intron 1 of 1) 55773 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 329-15 chr1 98247635 98247892 + 2 NA intron (NR_046088, intron 1 of 2) L1MA6|LINE|L1 37052 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 285-123 chr14 69057840 69058118 + 2 NA intron (NM_003861, intron 8 of 8) intron (NM_003861, intron 8 of 8) 78297 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 208-265 chr8 106969525 106969712 + 2 NA Intergenic L1MA8|LINE|L1 -199374 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 185-183 chr6 76588812 76588963 + 2 NA intron (NR_149101, intron 1 of 2) intron (NR_149101, intron 1 of 2) 4736 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 462-223 chr5 34544820 34545211 + 2 NA Intergenic MER61E|LTR|ERV1 -111313 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 209-142 chr19 52113331 52113465 + 2 NA non-coding (NR_135823, exon 5 of 5) non-coding (NR_135823, exon 5 of 5) -17633 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 468-78 chr14 48777354 48777811 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 808798 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 346-67 chr11 35369731 35370022 + 2 NA intron (NM_001195728, intron 1 of 11) intron (NM_001195728, intron 1 of 11) 49682 NM_004171 6506 Hs.502338 NM_004171 ENSG00000110436 SLC1A2 EAAT2|EIEE41|GLT-1|HBGT solute carrier family 1 member 2 protein-coding 547-98 chr2 53453776 53454251 + 2 NA Intergenic Intergenic -313770 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 286-144 chr16 7605065 7605272 + 2 NA intron (NM_145893, intron 6 of 13) intron (NM_145893, intron 6 of 13) 272323 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 256-311 chr5 25067191 25067410 + 2 NA Intergenic Intergenic 123356 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 336-244 chr19 34952327 34952610 + 2 NA Intergenic L1MB3|LINE|L1 11761 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 261-43 chr10 85028001 85028188 + 2 NA Intergenic Intergenic 170811 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 648-76 chr2 195300653 195301185 + 2 NA Intergenic Intergenic -356039 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 303-424 chr7 45621742 45621901 + 2 NA intron (NM_001281768, intron 4 of 9) intron (NM_001281768, intron 4 of 9) 47453 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 216-146 chr18 55680612 55680774 + 2 NA Intergenic Intergenic -44736 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 175-95 chr20 56566261 56566428 + 2 NA Intergenic Intergenic -11219 NR_136537 105372682 Hs.517135 NR_136537 ENSG00000225657 LINC01716 - long intergenic non-protein coding RNA 1716 ncRNA 322-320 chr3 17847063 17847365 + 2 NA Intergenic Intergenic 104270 NR_135536 105376975 Hs.543238 NR_135536 LOC105376975 - uncharacterized LOC105376975 ncRNA 264-74 chr11 38964290 38964462 + 2 NA Intergenic Intergenic 315518 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 363-27 chr1 215127852 215128069 + 2 NA intron (NM_001017424, intron 3 of 6) L2c|LINE|L2 45223 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 189-35 chr12 2200213 2200383 + 2 NA intron (NM_199460, intron 3 of 49).2 L2a|LINE|L2 23183 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 428-314 chr9 69143593 69143899 + 2 NA intron (NM_001369871, intron 1 of 24) MIR3|SINE|MIR 20731 NM_001369871 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 374-284 chr4 149273114 149273386 + 2 NA intron (NR_125887, intron 12 of 12) intron (NR_125887, intron 12 of 12) 118955 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 201-215 chr6 44777570 44777720 + 2 NA Intergenic L1MC5|LINE|L1 -225764 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 644-39 chr2 14818137 14818602 + 2 NA Intergenic MIRb|SINE|MIR 185652 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 445-114 chr2 21943824 21944204 + 2 NA Intergenic Intergenic -233362 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 355-217 chr19 2661260 2661479 + 2 NA intron (NM_052847, intron 1 of 4) intron (NM_052847, intron 1 of 4) 30654 NR_107004 102465838 NR_107004 ENSG00000277904 MIR7850 hsa-mir-7850 microRNA 7850 ncRNA 263-174 chr18 59362730 59362924 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -3562 NM_005570 3998 Hs.465295 NM_005570 ENSG00000074695 LMAN1 ERGIC-53|ERGIC53|F5F8D|FMFD1|MCFD1|MR60|gp58 lectin, mannose binding 1 protein-coding 520-114 chr17 12586175 12586643 + 2 NA intron (NR_034145, intron 2 of 3) AluSp|SINE|Alu 36441 NR_034145 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 310-524 chr8 104201201 104201421 + 2 NA intron (NM_001348498, intron 20 of 24) intron (NM_001348498, intron 20 of 24) -22024 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 339-160 chr14 58888554 58888732 + 2 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 60355 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 267-48 chr10 60988329 60988504 + 2 NA intron (NM_001350902, intron 1 of 11) L1PA16|LINE|L1 12581 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 343-358 chr3 135363476 135363728 + 2 NA Intergenic Intergenic 568342 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 296-134 chr14 38031460 38031696 + 2 NA Intergenic MIR|SINE|MIR -129454 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 275-274 chr4 111835139 111835290 + 2 NA Intergenic Intergenic -310240 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 239-313 chr5 59467958 59468149 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) -111083 NM_001197219 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 142-11 chr12 3736016 3736128 + 2 NA intron (NM_001144958, intron 1 of 19) L2c|LINE|L2 17037 NM_032680 84766 Hs.504534 NM_032680 ENSG00000130038 CRACR2A EFCAB4B calcium release activated channel regulator 2A protein-coding 240-378 chr6 66310875 66311038 + 2 NA Intergenic Intergenic 523077 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 238-336 chr6 131400379 131400541 + 2 NA Intergenic LTR8B|LTR|ERV1 150056 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 332-314 chr22 49740588 49740902 + 2 NA Intergenic L1MB7|LINE|L1 -83226 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 226-119 chr16 74050632 74050834 + 2 NA Intergenic MIR|SINE|MIR 164788 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 374-190 chr2 99766837 99767060 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -276931 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 289-84 chr11 70939987 70940164 + 2 NA intron (NM_012309, intron 9 of 24) MLT1D|LTR|ERVL-MaLR -67707 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 678-18 chr11 120770715 120771118 + 2 NA intron (NM_001282470, intron 2 of 19) MLT1A0|LTR|ERVL-MaLR 48199 NR_133008 105369532 Hs.694510 NR_133008 LOC105369532 - uncharacterized LOC105369532 ncRNA 249-21 chr1 162478415 162478586 + 2 NA Intergenic L1MA3|LINE|L1 -18674 NM_001184763 127933 Hs.127310 NM_144624 ENSG00000152332 UHMK1 KIS|KIST|P-CIP2 U2AF homology motif kinase 1 protein-coding 578-74 chr18 6922232 6922552 + 2 NA Intergenic L1ME2|LINE|L1 7477 NR_034100 400643 Hs.253920 NM_001103383 ENSG00000265933 LINC00668 - long intergenic non-protein coding RNA 668 ncRNA 122 chr1 34607088 34607190 + 2 NA Intergenic LTR67B|LTR|ERVL 62555 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 401-333 chr8 133596092 133596471 + 2 NA Intergenic AluJr|SINE|Alu -24394 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 548-94 chr17 63078127 63078529 + 2 NA intron (NM_025185, intron 3 of 25) L1MD2|LINE|L1 112093 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 219-151 chr19 21918253 21918423 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -66270 NM_001256653 7594 Hs.534365 NM_003423 ENSG00000198521 ZNF43 HTF6|KOX27|ZNF39L1 zinc finger protein 43 protein-coding 337-281 chr2 170132456 170132708 + 2 NA Intergenic L1MA4|LINE|L1 -45565 NR_045682 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 337-208 chr17 72199344 72199587 + 2 NA Intergenic Intergenic 78445 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 247-400 chr8 65870275 65870491 + 2 NA Intergenic MER48|LTR|ERV1 -28319 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 405-287 chr6 136721554 136721924 + 2 NA intron (NM_005923, intron 1 of 29) FLAM_A|SINE|Alu -62308 NR_134635 101928429 Hs.672896 NR_134635 LOC101928429 - uncharacterized LOC101928429 ncRNA 364-447 chr8 92668540 92668892 + 2 NA Intergenic Intergenic -13222 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 298-486 chr8 139821151 139821315 + 2 NA intron (NM_001160372, intron 21 of 22) L1ME3G|LINE|L1 -118110 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 243-161 chr17 11319402 11319581 + 2 NA intron (NM_001173461, intron 2 of 3) HAL1ME|LINE|L1 78068 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 304-79 chr11 54825392 54825615 + 2 NA Intergenic ALR/Alpha|Satellite|centr 118671 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 332-97 chr11 82665068 82665366 + 2 NA Intergenic L2c|LINE|L2 68647 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 358-492 chr8 123799730 123799915 + 2 NA exon (NM_001317917, exon 18 of 24) exon (NM_001317917, exon 18 of 24) 31383 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 533-56 chr15 27589017 27589539 + 2 NA Intergenic Intergenic -427959 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 344-77 chr11 42273966 42274221 + 2 NA Intergenic L1ME3C|LINE|L1 -20403 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 543-48 chr11 24949421 24949803 + 2 NA intron (NM_001009909, intron 7 of 11) intron (NM_001009909, intron 7 of 11) 452559 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 296-470 chr8 101525177 101525388 + 2 NA intron (NM_001330593, intron 1 of 15) intron (NM_001330593, intron 1 of 15) 32843 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 238-196 chr2 214221009 214221218 + 2 NA intron (NR_047660, intron 14 of 14) intron (NR_047660, intron 14 of 14) -189941 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 251-353 chr6 149407493 149407647 + 2 NA intron (NM_001292034, intron 6 of 6) intron (NM_001292034, intron 6 of 6) 7308 NM_001002255 387082 Hs.657168 NM_001002255 ENSG00000177688 SUMO4 IDDM5|SMT3H4|SUMO-4|dJ281H8.4 small ubiquitin like modifier 4 protein-coding 287-394 chr8 18353915 18354186 + 2 NA Intergenic L1PA15-16|LINE|L1 -37232 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 316-273 chr2 95365718 95365991 + 2 NA intron (NM_001034914, intron 1 of 7) L1ME1|LINE|L1 19196 NM_001034914 30818 Hs.437376 NM_013434 ENSG00000115041 KCNIP3 CSEN|DREAM|KCHIP3 potassium voltage-gated channel interacting protein 3 protein-coding 554-119 chr2 115747244 115747670 + 2 NA intron (NM_001321912, intron 11 of 25) intron (NM_001321912, intron 11 of 25) 403642 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 352-62 chr10 114136056 114136248 + 2 NA non-coding (NR_135815, exon 9 of 16) non-coding (NR_135815, exon 9 of 16) 38027 NR_031747 100302224 NR_031747 ENSG00000284442 MIR2110 hsa-mir-2110|mir-2110 microRNA 2110 ncRNA 298-173 chr18 5109532 5109751 + 2 NA Intergenic L3|LINE|CR1 28459 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 221-298 chr8 72353716 72353891 + 2 NA Intergenic Intergenic -102169 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 568-5 chr1 191953408 191953833 + 2 NA Intergenic Intergenic -204842 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 353-359 chr4 31150880 31151169 + 2 NA Intergenic MER58D|DNA|hAT-Charlie -20120 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 239-364 chr7 12684428 12684625 + 2 NA Intergenic Intergenic -2301 NM_212460 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 319-561 chr8 142170665 142170937 + 2 NA Intergenic Intergenic -5538 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 386-259 chr4 56585577 56585863 + 2 NA intron (NM_001256475, intron 6 of 8) ERVL-E-int|LTR|ERVL 55114 NM_001256475 100506564 Hs.573073 NM_001256475 ENSG00000249693 THEGL - theg spermatid protein like protein-coding 266-128 chr15 57791917 57792126 + 2 NA Intergenic MER115|DNA|hAT-Tip100 85307 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 503-108 chr15 95093443 95093902 + 2 NA Intergenic Intergenic 233428 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 133-17 chr12 52799254 52799352 + 2 NA Intergenic Intergenic -3186 NM_057088 3850 Hs.680652 NM_057088 ENSG00000186442 KRT3 CK3|K3 keratin 3 protein-coding 351-184 chr18 6724830 6725145 + 2 NA Intergenic LTR33|LTR|ERVL -4729 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 203-31 chr10 82520717 82520910 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -287893 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 405-339 chr8 141002929 141003211 + 2 NA promoter-TSS (NM_001352699) promoter-TSS (NM_001352699) -991 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 479-8 chr1 115620643 115620952 + 2 NA Intergenic L1MEc|LINE|L1 -21173 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 270-69 chr12 526432 526665 + 2 NA intron (NM_173593, intron 1 of 19) intron (NM_173593, intron 1 of 19) 59938 NR_134624 105369595 Hs.504422 NR_134624 LOC105369595 - uncharacterized LOC105369595 ncRNA 280-185 chr2 15752838 15753005 + 2 NA Intergenic Intergenic 62139 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 332-450 chr6 40194090 40194306 + 2 NA Intergenic MIR3|SINE|MIR 161808 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 392-118 chr18 8532706 8533070 + 2 NA Intergenic L1PA14|LINE|L1 -76557 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 494-188 chr3 140717720 140718049 + 2 NA Intergenic Intergenic 39820 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 279-442 chr9 93779586 93779771 + 2 NA Intergenic L1MC3|LINE|L1 -39679 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 320-462 chr5 135684223 135684405 + 2 NA intron (NM_001349335, intron 3 of 10) intron (NM_001349335, intron 3 of 10) -30379 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 257-98 chr13 24930097 24930274 + 2 NA non-coding (NR_026730, exon 5 of 5) non-coding (NR_026730, exon 5 of 5) -7324 NR_047594 55835 Hs.513379 NM_018451 ENSG00000151849 CENPJ BM032|CENP-J|CPAP|LAP|LIP1|MCPH6|SASS4|SCKL4|Sas-4 centromere protein J protein-coding 352-127 chr13 94762139 94762421 + 2 NA intron (NR_110754, intron 1 of 4) intron (NR_110754, intron 1 of 4) 1339 NR_110754 101927284 Hs.551673 NR_110754 LOC101927284 - uncharacterized LOC101927284 ncRNA 223-323 chr7 92652075 92652243 + 2 NA intron (NM_001259, intron 5 of 7) intron (NM_001259, intron 5 of 7) -61769 NM_001040057 257415 Hs.18564 NM_152789 ENSG00000234545 FAM133B - family with sequence similarity 133 member B protein-coding 346-194 chr17 57234341 57234633 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -21364 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 348-152 chr15 26452175 26452394 + 2 NA Intergenic Intergenic 176806 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 352-445 chr6 39592538 39592791 + 2 NA intron (NM_001289020, intron 7 of 21) intron (NM_001289020, intron 7 of 21) 132744 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 521-60 chr12 13423428 13423898 + 2 NA Intergenic Intergenic -46918 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 349-483 chr7 135103609 135103912 + 2 NA intron (NM_001305630, intron 2 of 2) intron (NM_001305630, intron 2 of 2) -44312 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 239-355 chr6 68198313 68198462 + 2 NA Intergenic L1PA16|LINE|L1 131512 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 535-190 chr4 138432416 138432804 + 2 NA Intergenic L1PA8|LINE|L1 122899 NR_051987 100874047 Hs.570848 NR_051987 ENSG00000251372 LINC00499 - long intergenic non-protein coding RNA 499 ncRNA 350-87 chr12 13566375 13566647 + 2 NA intron (NM_000834, intron 12 of 12) intron (NM_000834, intron 12 of 12) -189766 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 366-46 chr10 43730113 43730447 + 2 NA Intergenic AluSc5|SINE|Alu 48545 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 328-575 chr8 122000720 122000938 + 2 NA Intergenic Intergenic -359389 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 284-202 chr2 100506637 100506907 + 2 NA Intergenic L1M4b|LINE|L1 36290 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 226-26 chr1 229890221 229890387 + 2 NA intron (NR_146473, intron 1 of 2) ERV3-16A3_I-int|LTR|ERVL 1732 NR_146473 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 369-13 chr1 112087924 112088288 + 2 NA Intergenic L2|LINE|L2 97570 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 369-320 chr5 38229618 38229947 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -28777 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 171-20 chr11 32050216 32050380 + 2 NA Intergenic Intergenic -8980 NR_120526 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 362-158 chr14 82080990 82081236 + 2 NA Intergenic Intergenic -337975 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 573-169 chr6 103644678 103645073 + 2 NA Intergenic Intergenic 1214671 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 289-317 chr3 129398423 129398662 + 2 NA intron (NR_003111, intron 1 of 3) MER4D1|LTR|ERV1 897 NR_003111 132241 Hs.477537 NR_003111 ENSG00000251474 RPL32P3 - ribosomal protein L32 pseudogene 3 pseudo 427-262 chr8 105054990 105055236 + 2 NA Intergenic L1M6|LINE|L1 -263325 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 455-32 chr10 82264964 82265332 + 2 NA intron (NM_001370082, intron 3 of 10) L2b|LINE|L2 -32228 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 593-161 chr9 80594578 80595041 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 619786 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 386-254 chr4 22558410 22558753 + 2 NA Intergenic MLT2B4|LTR|ERVL -42515 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 414-168 chr2 147041583 147041963 + 2 NA Intergenic Intergenic 454716 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 200-78 chr14 62846383 62846542 + 2 NA intron (NM_139318, intron 8 of 10) intron (NM_139318, intron 8 of 10) 198996 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 238-394 chr8 122714573 122714757 + 2 NA Intergenic Intergenic -20559 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 325-176 chr14 99167357 99167603 + 2 NA Intergenic Intergenic 104717 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 115-47 chr7 127060402 127060497 + 2 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) -2265 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 222-373 chr8 116107904 116108074 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 217070 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 245-234 chr3 97144523 97144685 + 2 NA intron (NM_001080448, intron 3 of 17) HAL1|LINE|L1 -295003 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 364-244 chr20 11244431 11244662 + 2 NA Intergenic Intergenic 28837 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 674-91 chr6 159568518 159569045 + 2 NA Intergenic L1MDa|LINE|L1 124460 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 358-529 chrX 98760042 98760349 + 2 NA Intergenic L1ME3G|LINE|L1 -1195660 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 339-421 chr4 106090605 106090788 + 2 NA intron (NM_001290768, intron 26 of 26) MSTB-int|LTR|ERVL-MaLR -68218 NR_125928 101929577 Hs.631131 NR_125928 ENSG00000249635 LOC101929577 - uncharacterized LOC101929577 ncRNA 352-527 chr8 70804603 70804802 + 2 NA Intergenic Intergenic 135363 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 308-316 chr4 16983978 16984135 + 2 NA Intergenic L1ME3|LINE|L1 -85247 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 327-249 chr2 41128188 41128413 + 2 NA Intergenic Kanga1c|DNA|TcMar-Tc2 -615865 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 321-443 chr4 186451978 186452286 + 2 NA intron (NR_033901, intron 1 of 6) LTR8B|LTR|ERV1 48926 NR_033900 285441 Hs.481369 NR_033900 ENSG00000251165 F11-AS1 - F11 antisense RNA 1 ncRNA 278-128 chr15 33140234 33140438 + 2 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) 54378 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 411-273 chr7 52528778 52529020 + 2 NA Intergenic L2b|LINE|L2 -506734 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 275-200 chr2 79099736 79099899 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -11824 NM_006507 5968 Hs.4158 NM_006507 ENSG00000172023 REG1B PSPS2|REGH|REGI-BETA|REGL regenerating family member 1 beta protein-coding 602-62 chr2 114698846 114699272 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 134489 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 473-272 chr8 82973943 82974302 + 2 NA Intergenic LTR49-int|LTR|ERV1 62018 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 237-3 chr1 31561777 31562002 + 2 NA Intergenic L1MEd|LINE|L1 -14596 NM_001204414 64129 Hs.199368 NM_022164 ENSG00000142910 TINAGL1 ARG1|LCN7|LIECG3|TINAGRP tubulointerstitial nephritis antigen like 1 protein-coding 373-134 chr15 86525885 86526127 + 2 NA intron (NM_152336, intron 19 of 24) L1PB3|LINE|L1 -209038 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 435-139 chr20 52731976 52732267 + 2 NA Intergenic Intergenic 111283 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 394-351 chrX 148893271 148893556 + 2 NA intron (NM_001170628, intron 5 of 17) intron (NM_001170628, intron 5 of 17) 174322 NM_001170628 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 394-181 chr2 135037630 135037892 + 2 NA Intergenic LTR40b|LTR|ERVL -13083 NM_025052 80122 Hs.659395 NM_025052 ENSG00000176601 MAP3K19 RCK|YSK4 mitogen-activated protein kinase kinase kinase 19 protein-coding 530-199 chr5 63017346 63017758 + 2 NA Intergenic L1PA15|LINE|L1 438733 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 889 chr1 194040802 194041383 + 2 NA Intergenic Intergenic 736347 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 405-320 chr8 77289063 77289449 + 2 NA Intergenic Intergenic -161441 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 723-36 chr2 43863728 43864129 + 2 NA intron (NM_001357321, intron 6 of 12) intron (NM_001357321, intron 6 of 12) 24957 NM_022437 64241 Hs.413931 NM_022437 ENSG00000143921 ABCG8 GBD4|STSL ATP binding cassette subfamily G member 8 protein-coding 374-178 chr2 51221114 51221346 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 188629 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 484-112 chr2 11893026 11893331 + 2 NA Intergenic AluJb|SINE|Alu -56192 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 296-491 chr8 139986845 139987069 + 2 NA intron (NM_001160372, intron 19 of 22) MADE1|DNA|TcMar-Mariner 113578 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 386-166 chr2 50182438 50182737 + 2 NA intron (NM_001330093, intron 18 of 22) intron (NM_001330093, intron 18 of 22) 165167 NM_001330091 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 246-54 chr10 77688320 77688456 + 2 NA Intergenic Intergenic -50580 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 194-171 chr5 127283275 127283407 + 2 NA Intergenic Intergenic -7423 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 334-514 chr8 5495716 5495916 + 2 NA Intergenic Intergenic -500902 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 434-302 chr8 135587063 135587436 + 2 NA intron (NM_006558, intron 6 of 8) intron (NM_006558, intron 6 of 8) 129793 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 443-268 chr6 136023476 136023799 + 2 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 49190 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 342-558 chr9 102936067 102936401 + 2 NA Intergenic L1MD1|LINE|L1 -59099 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 359-466 chr8 59811710 59811926 + 2 NA Intergenic MIR|SINE|MIR 469582 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 340-543 chr8 109085867 109086105 + 2 NA promoter-TSS (NM_003301) promoter-TSS (NM_003301) -642 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 475-302 chr9 137893741 137894017 + 2 NA intron (NM_001243812, intron 3 of 45) L1MD1|LINE|L1 -1309 NR_121583 100133077 Hs.640081 NR_121583 ENSG00000203987 LOC100133077 - uncharacterized LOC100133077 ncRNA 441-279 chr9 101947881 101948183 + 2 NA Intergenic Intergenic -209452 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 526-172 chr3 93855889 93856291 + 2 NA Intergenic AluSc8|SINE|Alu 117991 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 330-89 chr11 45638841 45639068 + 2 NA Intergenic L1MEc|LINE|L1 26668 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 356-274 chr2 210114466 210114748 + 2 NA intron (NM_001307976, intron 3 of 13) L1M4c|LINE|L1 56802 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 396-281 chr5 54609292 54609619 + 2 NA Intergenic (TATT)n|Simple_repeat|Simple_repeat 91696 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 388-167 chr2 114392442 114392815 + 2 NA Intergenic MER4D|LTR|ERV1 -50013 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 600-53 chr19 29201072 29201589 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 11821 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 494-290 chr8 107036383 107036731 + 2 NA Intergenic Intergenic -266313 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 254-323 chr5 128693307 128693487 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -155152 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 365-404 chr8 106205538 106205877 + 2 NA Intergenic Intergenic -64471 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 259-247 chr3 50725338 50725491 + 2 NA intron (NM_004947, intron 1 of 52) L1MEc|LINE|L1 50334 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 460-159 chr2 209975481 209975853 + 2 NA intron (NM_032504, intron 55 of 63) intron (NM_032504, intron 55 of 63) -26898 NM_006916 6120 Hs.282260 NM_006916 ENSG00000197713 RPE RPE2-1 ribulose-5-phosphate-3-epimerase protein-coding 220-8 chr1 78064041 78064192 + 2 NA intron (NM_017655, intron 1 of 5) MER20B|DNA|hAT-Charlie 18150 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 423-164 chr22 26420702 26420985 + 2 NA Intergenic L1ME3Cz|LINE|L1 -8417 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 405-171 chr2 211674812 211675150 + 2 NA intron (NM_001042599, intron 13 of 26) intron (NM_001042599, intron 13 of 26) 751379 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 314-473 chr5 105788930 105789227 + 2 NA Intergenic L1M5|LINE|L1 689604 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 216-299 chr6 46576342 46576544 + 2 NA intron (NM_016593, intron 10 of 11) L1PA15|LINE|L1 76375 NM_016593 51302 Hs.387367 NM_016593 ENSG00000146233 CYP39A1 - cytochrome P450 family 39 subfamily A member 1 protein-coding 308-340 chr4 72940321 72940612 + 2 NA Intergenic AluJr|SINE|Alu 129250 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 390-226 chr3 4399572 4399896 + 2 NA intron (NM_001164674, intron 6 of 7) intron (NM_001164674, intron 6 of 7) 67535 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 447-30 chr10 66449483 66449782 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -476404 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 755-56 chr6 40193198 40193765 + 2 NA Intergenic Intergenic 162525 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 422-121 chr18 5118266 5118535 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 37218 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 571-34 chr12 25708974 25709387 + 2 NA Intergenic MIRb|SINE|MIR -60602 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 382-352 chr6 49690015 49690258 + 2 NA Intergenic Intergenic 23407 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 524-191 chr5 10956720 10957177 + 2 NA Intergenic Intergenic -195714 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 533-119 chr20 40362612 40363021 + 2 NA Intergenic Intergenic 326420 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 401-38 chr10 79144783 79144994 + 2 NA intron (NM_020338, intron 3 of 24) intron (NM_020338, intron 3 of 24) 75922 NM_020338 57178 Hs.193118 NM_020338 ENSG00000108175 ZMIZ1 MIZ|RAI17|TRAFIP10|ZIMP10 zinc finger MIZ-type containing 1 protein-coding 247-246 chr22 28523442 28523589 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 63646 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 309-210 chr17 77707950 77708236 + 2 NA Intergenic Intergenic 20466 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 388-298 chr6 35702815 35703174 + 2 NA intron (NM_001145775, intron 2 of 11) AluSq|SINE|Alu -14052 NM_004117 2289 Hs.407190 NM_004117 ENSG00000096060 FKBP5 AIG6|FKBP51|FKBP54|P54|PPIase|Ptg-10 FKBP prolyl isomerase 5 protein-coding 633-124 chr9 20534023 20534510 + 2 NA intron (NM_001286691, intron 2 of 10) intron (NM_001286691, intron 2 of 10) -31924 NR_039685 100616441 NR_039685 ENSG00000264941 MIR4474 - microRNA 4474 ncRNA 353-408 chr5 60030097 60030283 + 2 NA intron (NM_001349243, intron 2 of 16) AluYb8|SINE|Alu -136464 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 330-202 chr17 19273549 19273837 + 2 NA intron (NR_046824, intron 2 of 2) intron (NR_046824, intron 2 of 2) 2300 NR_046824 100874309 Hs.733657 NR_046824 EPN2-IT1 - EPN2 intronic transcript 1 ncRNA 487-179 chr3 28119359 28119739 + 2 NA Intergenic Intergenic -122070 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 480-212 chr4 57753476 57753852 + 2 NA Intergenic Intergenic 327792 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 211-173 chr22 26368126 26368297 + 2 NA intron (NM_001184775, intron 13 of 15) intron (NM_001184775, intron 13 of 15) -61049 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 116-41 chr6 70480136 70480229 + 2 NA intron (NM_020819, intron 6 of 20) intron (NM_020819, intron 6 of 20) -66224 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 367-248 chr20 14406817 14407144 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -69313 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 303-273 chr22 34284664 34284917 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -361902 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 308-104 chr12 26386765 26386951 + 2 NA intron (NM_002223, intron 55 of 56) MamSINE1|SINE|tRNA-RTE 191285 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 401-97 chr14 100003795 100004047 + 2 NA intron (NM_001330221, intron 1 of 13) MER4-int|LTR|ERV1 32499 NM_001330221 51466 Hs.125867 NM_016337 ENSG00000196405 EVL RNB6 Enah/Vasp-like protein-coding 358-397 chr6 5429981 5430265 + 2 NA intron (NM_006567, intron 3 of 6) intron (NM_006567, intron 3 of 6) 27952 NR_125848 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 311-558 chrX 73360319 73360610 + 2 NA Intergenic L1PA15|LINE|L1 -86790 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 425-240 chr5 124721975 124722222 + 2 NA intron (NM_020747, intron 1 of 8) intron (NM_020747, intron 1 of 8) 23014 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 319-210 chr18 71842798 71843075 + 2 NA Intergenic Intergenic -60710 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 455-144 chr20 9744007 9744355 + 2 NA intron (NM_177990, intron 1 of 9) MLT1D|LTR|ERVL-MaLR 94895 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 483-86 chr16 78590286 78590674 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 490826 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 222-49 chr10 110424864 110425078 + 2 NA Intergenic L1ME4a|LINE|L1 -72936 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 337-417 chr4 162353877 162354125 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -189967 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 349-165 chr14 65454994 65455186 + 2 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) -16012 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 325-344 chr3 40962354 40962540 + 2 NA Intergenic Intergenic -237058 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 363-440 chr8 74896921 74897207 + 2 NA Intergenic HAL1|LINE|L1 72530 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 289-375 chr5 91040785 91040954 + 2 NA intron (NR_003149, intron 85 of 89) intron (NR_003149, intron 85 of 89) 273533 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 839-24 chr2 194004054 194004657 + 2 NA Intergenic Intergenic -339914 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 362-327 chr5 2477167 2477438 + 2 NA Intergenic Intergenic -165101 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 129-50 chr20 45270985 45271077 + 2 NA Intergenic Intergenic -16467 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 456-74 chr13 27282726 27282997 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 11684 NM_001331126 387496 Hs.192131 NM_206827 ENSG00000122035 RASL11A - RAS like family 11 member A protein-coding 564-107 chr2 188672461 188672917 + 2 NA Intergenic Intergenic 117434 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 313-555 chr9 28094653 28094889 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -520905 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 238-104 chr14 71253731 71253891 + 2 NA Intergenic L1MC2|LINE|L1 -66665 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 178-87 chr3 70384331 70384480 + 2 NA Intergenic Intergenic -71767 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 340-225 chr19 44432869 44433088 + 2 NA intron (NM_001278510, intron 4 of 5) intron (NM_001278510, intron 4 of 5) 15494 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 217-113 chr14 57697206 57697392 + 2 NA intron (NM_001352014, intron 1 of 9) L1ME3B|LINE|L1 167700 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 622-93 chr4 36968913 36969336 + 2 NA Intergenic MLT2B1|LTR|ERVL -32655 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 253-371 chr6_KI270800v1_alt 80091 80300 + 2 NA Intergenic Intergenic 67129 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 404-219 chr3 137734965 137735212 + 2 NA Intergenic L1PB1|LINE|L1 -29227 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 334-360 chr3 112173812 112173993 + 2 NA intron (NM_001320531, intron 22 of 27).2 L1PA15|LINE|L1 40479 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 194-137 chr4 7889123 7889245 + 2 NA intron (NM_198595, intron 1 of 16) L1ME1|LINE|L1 -16876 NM_001371090 275-153 chr18 1872109 1872361 + 2 NA Intergenic Intergenic -512606 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 368-233 chr2 80654294 80654538 + 2 NA Intergenic MLT2B1|LTR|ERVL 341037 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 375-461 chr9 119184705 119185008 + 2 NA intron (NM_014618, intron 7 of 7) ERVL-B4-int|LTR|ERVL 184579 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 486-280 chr7 48881113 48881491 + 2 NA Intergenic MIR3|SINE|MIR -43245 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 204-295 chr8 129652080 129652275 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 28062 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 431-304 chr8 131115633 131116032 + 2 NA Intergenic L1MA1|LINE|L1 -74923 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 376-50 chr10 61590110 61590441 + 2 NA Intergenic Intergenic -72654 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 319-384 chr4 89635024 89635192 + 2 NA Intergenic Intergenic -201293 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 401-7 chr1 91308202 91308514 + 2 NA intron (NM_001017975, intron 30 of 38) L1MB7|LINE|L1 96479 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 222-169 chr2 45045813 45046012 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -36460 NM_016932 10736 Hs.101937 NM_016932 ENSG00000170577 SIX2 - SIX homeobox 2 protein-coding 600-107 chr5 166797122 166797601 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 129009 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 164-42 chr15 99394714 99394804 + 2 NA Intergenic L1MB7|LINE|L1 137234 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 396-31 chr1 213882121 213882471 + 2 NA intron (NR_037850, intron 4 of 5) intron (NR_037850, intron 4 of 5) -42453 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 852-34 chr3 98440446 98440964 + 2 NA Intergenic L1MC3|LINE|L1 -28775 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 202-192 chr4 124518474 124518626 + 2 NA intron (NR_110838, intron 7 of 8) intron (NR_110838, intron 7 of 8) 39884 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 164-4 chr1 111020192 111020298 + 2 NA Intergenic L1P4a|LINE|L1 -56301 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 275-179 chr2 30013075 30013231 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -91567 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 679-107 chr8 101377908 101378337 + 2 NA Intergenic AluJb|SINE|Alu 9229 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 299-190 chr19 46161500 46161666 + 2 NA TTS (NM_001002915) TTS (NM_001002915) 13345 NM_001135113 147920 Hs.99376 NM_001002915 ENSG00000204866 IGFL2 UNQ645|VPRI645 IGF like family member 2 protein-coding 554-219 chrX 77280835 77281212 + 2 NA Intergenic L1PA16|LINE|L1 -166366 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 407-293 chr7 49452469 49452715 + 2 NA Intergenic Intergenic -321046 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 426-187 chr3 104056653 104056877 + 2 NA Intergenic L1MA3|LINE|L1 -532649 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 273-434 chr7 137678880 137679089 + 2 NA intron (NM_001321710, intron 2 of 32) intron (NM_001321710, intron 2 of 32) 167348 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 404-44 chr10 68718511 68718832 + 2 NA Intergenic MER31-int|LTR|ERV1 -2568 NM_001282959 55749 Hs.49853 NM_018237 ENSG00000060339 CCAR1 - cell division cycle and apoptosis regulator 1 protein-coding 348-481 chr7 9114670 9114999 + 2 NA Intergenic Intergenic -519436 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 247-145 chr16 47829446 47829647 + 2 NA Intergenic Intergenic -29035 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 355-148 chr13 91069676 91069863 + 2 NA Intergenic Intergenic 19848 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 258-232 chr20 42072086 42072260 + 2 NA TTS (NM_007050) TTS (NM_007050) -453796 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 596-170 chr8 119130349 119130922 + 2 NA Intergenic Intergenic -61853 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 277-139 chr16 53587321 53587499 + 2 NA Intergenic L1ME4b|LINE|L1 -84106 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 454-82 chr13 47005543 47005834 + 2 NA Intergenic Intergenic -108612 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 519-177 chr5 71714592 71714851 + 2 NA Intergenic Intergenic -4554 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 289-93 chr12 10404197 10404417 + 2 NA intron (NM_001199805, intron 4 of 12) L1M5|LINE|L1 5450 NM_013431 8302 Hs.721094 NM_013431 ENSG00000183542 KLRC4 NKG2-F|NKG2F killer cell lectin like receptor C4 protein-coding 442-53 chr12 30392133 30392480 + 2 NA Intergenic LOR1-int|LTR|ERV1 284938 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 317-438 chr7 9258759 9258984 + 2 NA Intergenic L1MB7|LINE|L1 -375399 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 166-59 chr2 213907142 213907269 + 2 NA intron (NR_047660, intron 10 of 14) L1MA5|LINE|L1 149138 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 269-304 chr5 24146269 24146416 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 194994 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 199-78 chr16 80681733 80681905 + 2 NA intron (NM_152342, intron 2 of 6) intron (NM_152342, intron 2 of 6) -109011 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 391-260 chr4 65094488 65094750 + 2 NA Intergenic Intergenic -90119 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 739-37 chr2 100508286 100508915 + 2 NA Intergenic L1MDa|LINE|L1 38118 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 348-171 chr16 58121254 58121510 + 2 NA intron (NM_013242, intron 1 of 5) intron (NM_013242, intron 1 of 5) 7999 NM_013242 29105 Hs.532755 NM_013242 ENSG00000070761 CFAP20 BUG22|C16orf80|EVORF|GTL3|fSAP23 cilia and flagella associated protein 20 protein-coding 256-367 chr6 115270090 115270302 + 2 NA Intergenic Intergenic 373639 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 144-75 chr5 4567804 4567933 + 2 NA Intergenic L1M1|LINE|L1 -205613 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 567-12 chr1 168796263 168796610 + 2 NA Intergenic L1ME1|LINE|L1 9495 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 342-118 chr12 61842717 61842918 + 2 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 350022 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 595-152 chr7 52848707 52849111 + 2 NA Intergenic L1MC3|LINE|L1 -186724 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 243-398 chr6 141893149 141893344 + 2 NA Intergenic L1MEd|LINE|L1 195553 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 360-231 chr2 123371670 123371908 + 2 NA Intergenic MLT2B4|LTR|ERVL -298308 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 646-55 chr2 31425021 31425421 + 2 NA Intergenic Tigger12c|DNA|TcMar-Tigger -10479 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 509-274 chrX 67355784 67356200 + 2 NA Intergenic L3b|LINE|CR1 -188029 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 329-195 chr15 95065627 95065851 + 2 NA Intergenic L1MA6|LINE|L1 210376 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 274-211 chr2 83295173 83295414 + 2 NA Intergenic L1M4a1|LINE|L1 -227521 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 420-85 chr14 87436127 87436433 + 2 NA Intergenic Kanga1c|DNA|TcMar-Tc2 219014 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 660-87 chr5 135962903 135963455 + 2 NA Intergenic Ricksha_0|DNA|MULE-MuDR -8196 NM_002302 3950 Hs.512580 NM_002302 ENSG00000145826 LECT2 chm-II|chm2 leukocyte cell derived chemotaxin 2 protein-coding 279-256 chr3 57728117 57728318 + 2 NA Intergenic Intergenic -29039 NM_001304421 7871 Hs.476432 NM_007159 ENSG00000163681 SLMAP SLAP sarcolemma associated protein protein-coding 330-247 chr2 2108563 2108832 + 2 NA intron (NM_015025, intron 3 of 24) intron (NM_015025, intron 3 of 24) -210535 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 321-172 chr14 63504767 63504954 + 2 NA intron (NM_001354926, intron 2 of 2) L2c|LINE|L2 3378 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 230-128 chr15 80550666 80550856 + 2 NA intron (NM_014862, intron 8 of 18) intron (NM_014862, intron 8 of 18) 12183 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 266-62 chr11 59429443 59429679 + 2 NA Intergenic Intergenic -6608 NM_001001954 219981 Hs.553648 NM_001001954 ENSG00000172324 OR5A2 - olfactory receptor family 5 subfamily A member 2 protein-coding 582-12 chr10 112884128 112884516 + 2 NA Intergenic L1MC4a|LINE|L1 60826 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 417-170 chr22 27119420 27119745 + 2 NA Intergenic Intergenic -59064 NM_001318329 284898 Hs.350813 NM_001318329 LOC284898 - uncharacterized LOC284898 protein-coding 339-358 chr3 59107227 59107547 + 2 NA Intergenic MER33|DNA|hAT-Charlie -57355 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 195-37 chr11 61856054 61856171 + 2 NA intron (NM_001281502, intron 5 of 11) intron (NM_001281502, intron 5 of 11) 22166 NR_106804 102465446 NR_106804 ENSG00000277892 MIR6746 hsa-mir-6746 microRNA 6746 ncRNA 289-320 chr3 153761689 153761947 + 2 NA intron (NR_146713, intron 1 of 6) intron (NR_146713, intron 1 of 6) 708 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 216-208 chr22 50006016 50006159 + 2 NA intron (NM_001371416, intron 2 of 14) intron (NM_001371416, intron 2 of 14) 6678 NM_001371416 733-15 chr12 129986154 129986830 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 55850 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 360-302 chr3 74486812 74487098 + 2 NA intron (NM_020872, intron 2 of 21) intron (NM_020872, intron 2 of 21) 34185 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 374-388 chr8 88253861 88254086 + 2 NA intron (NM_005941, intron 1 of 9) L1PA13|LINE|L1 73510 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 436-22 chr1 217924011 217924335 + 2 NA Intergenic Intergenic 31273 NR_048550 100885798 Hs.434632 NR_048550 ENSG00000231814 LINC00210 NCRNA00210 long intergenic non-protein coding RNA 210 ncRNA 294-400 chr5 180406480 180406646 + 2 NA Intergenic Intergenic -53227 NM_005110 9945 Hs.696497 NM_005110 ENSG00000131459 GFPT2 GFAT|GFAT 2|GFAT2 glutamine-fructose-6-phosphate transaminase 2 protein-coding 260-99 chr12 30220692 30220865 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -436019 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 239-178 chr2 95500588 95500806 + 2 NA Intergenic Intergenic -15966 NM_001164464 653192 Hs.723811 NM_001164464 ENSG00000144010 TRIM43B - tripartite motif containing 43B protein-coding 227-203 chr20 33441548 33441711 + 2 NA intron (NM_003098, intron 1 of 7) intron (NM_003098, intron 1 of 7) 2263 NM_003098 6640 Hs.31121 NM_003098 ENSG00000101400 SNTA1 LQT12|SNT1|TACIP1|dJ1187J4.5 syntrophin alpha 1 protein-coding 320-41 chr1 235578151 235578398 + 2 NA intron (NM_004485, intron 2 of 2) L1MA8|LINE|L1 71510 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 357-459 chr8 129660441 129660757 + 2 NA intron (NR_130917, intron 1 of 3) Tigger3b|DNA|TcMar-Tigger 19640 NR_130917 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 356-478 chr8 87044324 87044661 + 2 NA intron (NM_173538, intron 4 of 10) MER61F|LTR|ERV1 178077 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 325-60 chr10 52896498 52896686 + 2 NA Intergenic Intergenic -124892 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 309-453 chr5 116846553 116846746 + 2 NA Intergenic Intergenic -84440 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 172-148 chrX 82033685 82033786 + 2 NA Intergenic MER61-int|LTR|ERV1 831633 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 398-283 chr5 137693383 137693676 + 2 NA intron (NM_017415, intron 4 of 14) intron (NM_017415, intron 4 of 14) 12898 NM_001257195 26249 Hs.655084 NM_017415 ENSG00000146021 KLHL3 PHA2D kelch like family member 3 protein-coding 137-46 chr2 88299431 88299537 + 2 NA Intergenic Intergenic 126345 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 335-268 chr2 154123902 154124119 + 2 NA intron (NM_052917, intron 3 of 12) L1ME2|LINE|L1 179616 NM_001301627 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 246-247 chr3 7580262 7580436 + 2 NA intron (NM_000844, intron 8 of 9) intron (NM_000844, intron 8 of 9) -45065 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 285-328 chr5 21127407 21127598 + 2 NA Intergenic Intergenic -331978 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 402-324 chr7 93557606 93557941 + 2 NA intron (NM_001164737, intron 2 of 15) intron (NM_001164737, intron 2 of 15) 2037 NM_001164738 799 Hs.489127 NM_001742 ENSG00000004948 CALCR CRT|CT-R|CTR|CTR1 calcitonin receptor protein-coding 264-27 chr1 234324032 234324267 + 2 NA 3' UTR (NM_001300845, exon 7 of 7) 3' UTR (NM_001300845, exon 7 of 7) 17682 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 396-75 chr11 98429533 98429876 + 2 NA Intergenic L1MA9|LINE|L1 -591245 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 264-167 chr17 61154799 61154963 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 212823 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 136-63 chr4 14522420 14522506 + 2 NA intron (NR_126435, intron 5 of 6) (AT)n|Simple_repeat|Simple_repeat 365706 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 204-189 chr3 8456033 8456211 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 45536 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 249-245 chr21 25239587 25239728 + 2 NA Intergenic L1MB2|LINE|L1 192044 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 451-229 chr8 79217591 79217875 + 2 NA Intergenic Intergenic -114455 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 735-35 chr19 6917836 6918277 + 2 NA intron (NM_001974, intron 12 of 20) intron (NM_001974, intron 12 of 20) 30477 NM_001256255 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 252-402 chr7 70153726 70153943 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 555359 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 185-126 chr22 26572860 26573037 + 2 NA intron (NM_001362923, intron 1 of 7) MIRb|SINE|MIR -7607 NM_001008566 8459 Hs.632768 NM_003595 ENSG00000128294 TPST2 TANGO13B|TPST-2 tyrosylprotein sulfotransferase 2 protein-coding 253-326 chr5 44602455 44602660 + 2 NA Intergenic Intergenic -92275 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 255-394 chr7 89536223 89536377 + 2 NA Intergenic Intergenic -583100 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 914-19 chr2 220873033 220873750 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 698913 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 236-260 chr4 90790383 90790582 + 2 NA intron (NM_001145065, intron 7 of 10) L2c|LINE|L2 555451 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 149-21 chr12 45520945 45521060 + 2 NA Intergenic MLT2B5|LTR|ERVL 206919 NR_028408 400027 Hs.597122 NR_028408 LINC00938 - long intergenic non-protein coding RNA 938 ncRNA 259-110 chr14 39888311 39888507 + 2 NA Intergenic L1M1|LINE|L1 -455909 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 125-31 chr20 49095230 49095293 + 2 NA intron (NR_045796, intron 21 of 21) intron (NR_045796, intron 21 of 21) 48949 NM_001316 1434 Hs.90073 NM_001316 ENSG00000124207 CSE1L CAS|CSE1|XPO2 chromosome segregation 1 like protein-coding 256-198 chr2 77658682 77658875 + 2 NA Intergenic Intergenic -136345 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 119-16 chr15 38731537 38731623 + 2 NA Intergenic Intergenic 34982 NR_160786 161-67 chr3 81860485 81860614 + 2 NA Intergenic Arthur1C|DNA|hAT-Tip100 -98904 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 331-66 chr10 88453137 88453365 + 2 NA intron (NM_018363, intron 4 of 6) LTR16A|LTR|ERVL 130067 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 378-319 chr4 124781291 124781630 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -68728 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 191-141 chr3 139919500 139919626 + 2 NA Intergenic L1ME3B|LINE|L1 -15622 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 264-57 chr10 85052084 85052311 + 2 NA Intergenic Intergenic 146708 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 703-42 chr2 37454945 37455640 + 2 NA Intergenic L2c|LINE|L2 110662 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 394-234 chr4 43059689 43059996 + 2 NA Intergenic L1M1|LINE|L1 166576 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 494-137 chr2 135194992 135195308 + 2 NA Intergenic Intergenic 58522 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 335-542 chr8 117010623 117010944 + 2 NA intron (NM_001172813, intron 2 of 10) MSTA|LTR|ERVL-MaLR 59808 NM_001172813 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 239-247 chr3 98034954 98035102 + 2 NA intron (NM_001105580, intron 1 of 9) intron (NM_001105580, intron 1 of 9) 276 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 316-338 chr3 2585788 2586019 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -306312 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 222-55 chr10 130380308 130380498 + 2 NA Intergenic Intergenic 243994 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 257-356 chr6 67459930 67460100 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -595336 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 313-424 chr5 36091961 36092118 + 2 NA Intergenic MER75|DNA|PiggyBac -25157 NR_031764 167127 Hs.348941 NM_174914 ENSG00000168671 UGT3A2 - UDP glycosyltransferase family 3 member A2 protein-coding 525-127 chr2 125572790 125573141 + 2 NA Intergenic LTR06|LTR|ERV1 545020 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 345-346 chr3 35138567 35138840 + 2 NA intron (NR_110817, intron 2 of 3) L1MA7|LINE|L1 255320 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 367-315 chr4 23708205 23708431 + 2 NA Intergenic MLT2C1|LTR|ERVL 172974 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 227-283 chr5 43443422 43443622 + 2 NA TTS (NM_022483) TTS (NM_022483) -31131 NM_001301873 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 354-9 chr1 67219598 67219849 + 2 NA exon (NM_144701, exon 7 of 11) exon (NM_144701, exon 7 of 11) 53269 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 151-81 chr7 78541225 78541319 + 2 NA intron (NM_001301128, intron 3 of 20) intron (NM_001301128, intron 3 of 20) 194030 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 628-18 chr1 208723311 208723822 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -5122 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 292-410 chr7 52823331 52823549 + 2 NA Intergenic L1MA9|LINE|L1 -212193 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 551-166 chr5 120805449 120805845 + 2 NA Intergenic L3b|LINE|CR1 274183 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 228-146 chr19 12079294 12079466 + 2 NA 3' UTR (NM_001136501, exon 4 of 4) 3' UTR (NM_001136501, exon 4 of 4) -12917 NM_001348164 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 577-83 chr18 76067761 76068263 + 2 NA Intergenic AluY|SINE|Alu -54986 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 335-36 chr1 236368180 236368434 + 2 NA Intergenic Intergenic -25979 NM_145861 128178 Hs.352224 NM_080738 ENSG00000186197 EDARADD ECTD11A|ECTD11B|ED3|EDA3 EDAR associated death domain protein-coding 211-52 chr11 71446700 71446868 + 2 NA intron (NM_001360, intron 2 of 8) intron (NM_001360, intron 2 of 8) 1609 NM_001163817 1717 Hs.503134 NM_001360 ENSG00000172893 DHCR7 SLOS 7-dehydrocholesterol reductase protein-coding 340-109 chr12 50310398 50310586 + 2 NA Intergenic L1MC4|LINE|L1 -26972 NM_016357 51474 Hs.525419 NM_016357 ENSG00000050405 LIMA1 EPLIN|LDLCQ8|SREBP3 LIM domain and actin binding 1 protein-coding 256-238 chr21 18101935 18102115 + 2 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -142808 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 285-239 chr20 13599826 13600034 + 2 NA intron (NM_017714, intron 4 of 13) intron (NM_017714, intron 4 of 13) 39002 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 201-99 chr17 34774121 34774291 + 2 NA Intergenic Intergenic 187254 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 262-47 chr10 53950769 53950988 + 2 NA intron (NM_001354411, intron 24 of 34) intron (NM_001354411, intron 24 of 34) -535352 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 126-2 chr1 114325389 114325493 + 2 NA Intergenic L1M5|LINE|L1 -171572 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 140-28 chr16 1040217 1040305 + 2 NA Intergenic Intergenic -32495 NM_001172560 6755 Hs.449840 NM_001053 ENSG00000162009 SSTR5 SS-5-R somatostatin receptor 5 protein-coding 282-329 chr4 33458513 33458733 + 2 NA Intergenic L1M5|LINE|L1 581270 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 384-104 chr14 29556649 29556861 + 2 NA Intergenic MER34B|LTR|ERV1 370341 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 228-5 chr1 40470537 40470722 + 2 NA Intergenic Intergenic -6661 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 402-349 chr8 120988567 120988935 + 2 NA Intergenic Intergenic -176705 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 310-578 chrX 126229111 126229409 + 2 NA Intergenic Intergenic -62971 NM_001013628 340578 Hs.181867 NM_001013628 ENSG00000198354 DCAF12L2 WDR40C DDB1 and CUL4 associated factor 12 like 2 protein-coding 297-104 chr12 26764986 26765277 + 2 NA intron (NM_002223, intron 2 of 56) intron (NM_002223, intron 2 of 56) 68063 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 373-424 chr8 126140976 126141239 + 2 NA Intergenic Intergenic -184388 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 204-251 chr6 65592744 65592933 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) -13034 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 314-210 chr16 60333022 60333189 + 2 NA Intergenic Intergenic 26688 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 303-126 chr14 70523491 70523739 + 2 NA exon (NM_003814, exon 2 of 2) exon (NM_003814, exon 2 of 2) 11389 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 211-29 chr10 44213184 44213335 + 2 NA Intergenic L1MEg|LINE|L1 -79491 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 433-45 chr11 58105726 58106099 + 2 NA intron (NM_001005212, intron 2 of 2) L1MA10|LINE|L1 13532 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 546-78 chr15 70221624 70222165 + 2 NA Intergenic MIR|SINE|MIR -123977 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 189-67 chr16 79147088 79147249 + 2 NA intron (NM_001291997, intron 7 of 7) L1MD2|LINE|L1 453569 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 341-341 chr3 105398455 105398702 + 2 NA intron (NM_001243280, intron 1 of 14) intron (NM_001243280, intron 1 of 14) 31669 NM_001243280 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 408-294 chr6 63112424 63112652 + 2 NA Intergenic AluSq|SINE|Alu 207439 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 269-222 chr20 15337322 15337585 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 140613 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 313-563 chrX 14128417 14128641 + 2 NA Intergenic L1PA16|LINE|L1 -98637 NM_017856 54960 Hs.592237 NM_017856 ENSG00000046647 GEMIN8 FAM51A1 gem nuclear organelle associated protein 8 protein-coding 352-142 chr14 52228258 52228570 + 2 NA Intergenic Intergenic -39284 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 219-297 chr5 144704280 144704474 + 2 NA Intergenic Intergenic 498986 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 425-233 chr5 60994861 60995201 + 2 NA intron (NM_174889, intron 1 of 3) L1MA1|LINE|L1 49826 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 348-563 chr9 117846310 117846607 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 142055 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 358-167 chr18 11025143 11025399 + 2 NA intron (NM_022068, intron 2 of 51) MIR|SINE|MIR 123491 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 322-367 chr4 48246317 48246569 + 2 NA intron (NM_003215, intron 1 of 17) L1MB5|LINE|L1 23395 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 650-2 chr1 48909173 48909625 + 2 NA intron (NM_001323575, intron 5 of 12) intron (NM_001323575, intron 5 of 12) -132430 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 267-422 chr8 87244386 87244573 + 2 NA intron (NM_173538, intron 6 of 10) L1MA4A|LINE|L1 378064 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 319-164 chr15 93866056 93866279 + 2 NA intron (NR_120321, intron 2 of 3) intron (NR_120321, intron 2 of 3) 9607 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 236-145 chr17 63589303 63589449 + 2 NA 3' UTR (NM_005828, exon 7 of 7) 3' UTR (NM_005828, exon 7 of 7) -11519 NM_016360 51204 Hs.174134 NM_016360 ENSG00000136463 TACO1 CCDC44 translational activator of cytochrome c oxidase I protein-coding 299-37 chr1 248111738 248111889 + 2 NA Intergenic MER41B|LTR|ERV1 -10323 NR_002141 388762 Hs.528509 NR_002141 OR2M1P JCG10|OR2M1|OST037 olfactory receptor family 2 subfamily M member 1 pseudogene pseudo 290-391 chr6 80451858 80452118 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 345317 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 314-346 chr21 10717448 10717634 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 196027 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 729-57 chr4 41012410 41013058 + 2 NA intron (NM_004307, intron 6 of 17) intron (NM_004307, intron 6 of 17) -155542 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 121-54 chr5 106992407 106992485 + 2 NA intron (NR_104671, intron 1 of 3) intron (NR_104671, intron 1 of 3) 18568 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 265-324 chr5 150886996 150887186 + 2 NA intron (NM_001346557, intron 3 of 3) L1PREC2|LINE|L1 17892 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 1203-5 chr13 112082715 112083596 + 2 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 16006 NM_005986 6656 NM_005986 ENSG00000182968 SOX1 - SRY-box transcription factor 1 protein-coding 312-529 chr8 118280240 118280461 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -168531 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 354-6 chr1 40471066 40471277 + 2 NA Intergenic L1MB2|LINE|L1 -6119 NM_001320179 339559 Hs.434385 NM_198494 ENSG00000187815 ZFP69 ZFP69A|ZKSCAN23A|ZNF642|ZSCAN54A ZFP69 zinc finger protein protein-coding 321-400 chr3 197970778 197971090 + 2 NA intron (NM_033029, intron 1 of 15) L1MEf|LINE|L1 10717 NR_026786 89782 Hs.518540 NM_033029 ENSG00000185621 LMLN GP63|INV|IX14|LMNL1|MSP leishmanolysin like peptidase protein-coding 338-277 chr2 150898000 150898321 + 2 NA Intergenic Intergenic 269263 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 717-75 chr7 35493666 35494066 + 2 NA Intergenic LTR33|LTR|ERVL 180011 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 423-65 chr12 127619154 127619419 + 2 NA Intergenic Intergenic 17181 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 452-179 chr4 22999262 22999657 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie 285370 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 175-126 chr5 18587520 18587631 + 2 NA Intergenic Intergenic 780301 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 324-536 chr8 99750005 99750259 + 2 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 143575 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 434-73 chr13 63427168 63427590 + 2 NA Intergenic MER11A|LTR|ERVK -99285 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 459-37 chr10 67164660 67164984 + 2 NA intron (NM_001127384, intron 7 of 17) L1MD2|LINE|L1 152556 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 274 chr1 9030549 9030770 + 2 NA Intergenic Intergenic -4314 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 325-112 chr11 114584054 114584319 + 2 NA intron (NM_017678, intron 2 of 5) intron (NM_017678, intron 2 of 5) 11600 NM_001077639 54827 Hs.179100 NM_017678 ENSG00000137634 NXPE4 C11orf33|FAM55D neurexophilin and PC-esterase domain family member 4 protein-coding 232-14 chr1 166484386 166484542 + 2 NA intron (NR_146890, intron 1 of 2) intron (NR_146890, intron 1 of 2) 5575 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 295-158 chr15 95694482 95694737 + 2 NA Intergenic L1MCc|LINE|L1 261516 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 259-158 chr17 49624021 49624214 + 2 NA intron (NM_001007228, intron 1 of 9) intron (NM_001007228, intron 1 of 9) 2472 NM_001370732 8405 Hs.463382 NM_003563 ENSG00000121067 SPOP BTBD32|TEF2 speckle type BTB/POZ protein protein-coding 546-70 chr14 46060824 46061368 + 2 NA Intergenic Intergenic -3063 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 213-125 chr19 33600624 33600742 + 2 NA Intergenic AluSz6|SINE|Alu -21270 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 470-150 chr2 236396533 236396781 + 2 NA intron (NR_073043, intron 9 of 19) intron (NR_073043, intron 9 of 19) 107040 NM_001270585 79781 Hs.591594 NM_024726 ENSG00000132321 IQCA1 4930465P12Rik|DRC11|IQCA IQ motif containing with AAA domain 1 protein-coding 341-8 chr1 41458086 41458277 + 2 NA Intergenic Intergenic 26502 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 338-37 chr1 232933673 232933959 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -16795 NR_138026 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 653-69 chr2 74731881 74732493 + 2 NA Intergenic Intergenic 77940 NR_073399 10505 Hs.25887 NM_004263 ENSG00000135622 SEMA4F M-SEMA|PRO2353|S4F|SEMAM|SEMAW|m-Sema-M ssemaphorin 4F protein-coding 217-273 chr4 119192667 119192843 + 2 NA TTS (NR_125931) TTS (NR_125931) -19872 NM_019050 54532 Hs.431081 NM_019050 ENSG00000145390 USP53 - ubiquitin specific peptidase 53 protein-coding 474-49 chr11 79915867 79916335 + 2 NA Intergenic Intergenic -475071 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 397-364 chrX 22910750 22911074 + 2 NA intron (NR_073010, intron 3 of 11) intron (NR_073010, intron 3 of 11) -89048 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 228-358 chr8 139506071 139506246 + 2 NA Intergenic Intergenic 196965 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 128-6 chr10 18756187 18756274 + 2 NA Intergenic Intergenic 96799 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 446-180 chr3 32155241 32155593 + 2 NA intron (NM_015141, intron 5 of 7) intron (NM_015141, intron 5 of 7) 48906 NM_015141 23171 Hs.82432 NM_015141 ENSG00000152642 GPD1L GPD1-L glycerol-3-phosphate dehydrogenase 1 like protein-coding 308-393 chr5 99353846 99354071 + 2 NA Intergenic L1M4|LINE|L1 -180032 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 287-431 chr9 32626060 32626315 + 2 NA Intergenic L2b|LINE|L2 9482 NM_153809 138474 Hs.591086 NM_153809 ENSG00000122728 TAF1L TAF(II)210|TAF2A2 TATA-box binding protein associated factor 1 like protein-coding 394-248 chr4 129663218 129663590 + 2 NA Intergenic L1ME3G|LINE|L1 108074 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 350-46 chr10 53781819 53782145 + 2 NA Intergenic Intergenic -704248 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 313-273 chr2 121501686 121501913 + 2 NA intron (NM_015282, intron 8 of 38) intron (NM_015282, intron 8 of 38) -29081 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 421-114 chr18 27562992 27563350 + 2 NA Intergenic L2a|LINE|L2 -220515 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 302-453 chr8 86717207 86717396 + 2 NA intron (NM_019098, intron 3 of 17) AluSz|SINE|Alu 26374 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 494-57 chr13 54679071 54679393 + 2 NA Intergenic LTR8A|LTR|ERV1 -367184 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 523-269 chr8 84990771 84991144 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -116281 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 433-142 chr2 166824305 166824722 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -63974 NM_001079810 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 254-15 chr1 118043406 118043557 + 2 NA intron (NM_206996, intron 20 of 48) MER63C|DNA|hAT-Blackjack 113742 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 342-37 chr1 189719224 189719501 + 2 NA Intergenic Intergenic 756648 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 313-75 chr11 24654158 24654370 + 2 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 157211 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 349-409 chr5 29668226 29668492 + 2 NA Intergenic Intergenic -212201 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 363-267 chr20 61787417 61787736 + 2 NA intron (NM_001252339, intron 3 of 14) THE1C|LTR|ERVL-MaLR -67828 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 273-303 chr3 159756396 159756586 + 2 NA intron (NM_001197108, intron 1 of 6) THE1B-int|LTR|ERVL-MaLR 12121 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 857-49 chr6 61368198 61368898 + 2 NA Intergenic ALR/Alpha|Satellite|centr -205582 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 375-129 chr14 72328527 72328723 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -188195 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 232-38 chr10 69542327 69542503 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 31007 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 385-262 chr4 23270376 23270692 + 2 NA Intergenic Intergenic 556445 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 629-89 chr4 82698876 82699275 + 2 NA intron (NM_001037582, intron 2 of 4) MER1A|DNA|hAT-Charlie 54355 NR_030301 693160 NR_030301 ENSG00000207746 MIR575 MIRN575|hsa-mir-575 microRNA 575 ncRNA 162-50 chr19 7077869 7078004 + 2 NA intron (NM_024341, intron 5 of 7) L1MB5|LINE|L1 8233 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 475-280 chr8 76456350 76456700 + 2 NA intron (NR_105006, intron 2 of 5) intron (NR_105006, intron 2 of 5) 49871 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 336-566 chr8 136352737 136353055 + 2 NA Intergenic Intergenic -177902 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 305-157 chr14 78553412 78553705 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 149839 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 357-171 chr18 54852542 54852771 + 2 NA intron (NM_004163, intron 1 of 5) intron (NM_004163, intron 1 of 5) 24179 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 302-281 chr3 27852470 27852743 + 2 NA intron (NR_146630, intron 4 of 4) THE1D-int|LTR|ERVL-MaLR -18470 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 514-69 chr13 34393950 34394454 + 2 NA intron (NR_146542, intron 1 of 3) MIRb|SINE|MIR 46159 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 320-514 chr7 48977842 48978087 + 2 NA Intergenic L1MD|LINE|L1 53417 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 512-216 chr5 54589054 54589467 + 2 NA Intergenic Intergenic 71501 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 263-102 chr14 46089764 46089932 + 2 NA intron (NR_102702, intron 1 of 3) MSTB1|LTR|ERVL-MaLR 25689 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 197-83 chr19 29367488 29367607 + 2 NA intron (NR_040029, intron 9 of 9) intron (NR_040029, intron 9 of 9) -154396 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 210-52 chr11 115414681 115414809 + 2 NA intron (NM_001098517, intron 1 of 8) Tigger18a|DNA|TcMar-Tigger 17989 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 381-185 chr2 37305451 37305725 + 2 NA intron (NM_005813, intron 1 of 17) MIRb|SINE|MIR 11496 NM_005813 23683 Hs.660757 NM_005813 ENSG00000115825 PRKD3 EPK2|PKC-NU|PKD3|PRKCN|nPKC-NU protein kinase D3 protein-coding 352-5 chr1 50006718 50007036 + 2 NA intron (NM_001323575, intron 1 of 12) L1MA1|LINE|L1 17077 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 552-143 chr3 111513980 111514497 + 2 NA Intergenic Intergenic -27959 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 545-11 chr1 180367289 180367745 + 2 NA intron (NM_032360, intron 6 of 7) L1PA14|LINE|L1 70873 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 331-489 chr7 30954381 30954627 + 2 NA Intergenic L1M4|LINE|L1 -9449 NM_000823 2692 Hs.767 NM_000823 ENSG00000106128 GHRHR GHRFR|GRFR|IGHD1B|IGHD4 growth hormone releasing hormone receptor protein-coding 212-338 chr8 137933154 137933325 + 2 NA intron (NR_161374, intron 2 of 7) L2a|LINE|L2 150306 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 332-540 chr8 117720170 117720370 + 2 NA Intergenic MIRb|SINE|MIR 199557 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 340-320 chr20 43913216 43913456 + 2 NA Intergenic L1M5|LINE|L1 -1516 NM_001098797 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 391-281 chr5 18530054 18530378 + 2 NA Intergenic L3|LINE|CR1 722942 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 387-157 chr2 7798825 7799075 + 2 NA Intergenic Intergenic 100705 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 509-199 chr5 94306687 94307063 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -195176 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 345-23 chr1 164861544 164861736 + 2 NA intron (NM_001353131, intron 7 of 7) L2a|LINE|L2 -86999 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 272-53 chr10 71947902 71948084 + 2 NA Intergenic Intergenic -16402 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 710-75 chr5 23731933 23732426 + 2 NA Intergenic L1ME3A|LINE|L1 -219169 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 536-129 chr2 129019095 129019477 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 154686 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 231-169 chr2 99137875 99138087 + 2 NA intron (NM_001349013, intron 1 of 16) MLT1A0|LTR|ERVL-MaLR 3199 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 469-284 chr8 88415089 88415543 + 2 NA Intergenic Intergenic -87833 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 614-5 chr1 151724375 151724938 + 2 NA intron (NM_001144956, intron 2 of 4) intron (NM_001144956, intron 2 of 4) 3134 NM_001144956 284485 Hs.297967 NM_001144956 ENSG00000178796 RIIAD1 C1orf230|NCRNA00166 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding 299-285 chr3 87637865 87638127 + 2 NA Intergenic Intergenic -154710 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 317-111 chr12 81568103 81568302 + 2 NA intron (NM_001220474, intron 2 of 30) intron (NM_001220474, intron 2 of 30) 30169 NM_001220478 8499 Hs.506216 NM_003625 ENSG00000139220 PPFIA2 - PTPRF interacting protein alpha 2 protein-coding 415-297 chr8 139658942 139659158 + 2 NA intron (NR_104210, intron 1 of 3) L2b|LINE|L2 44073 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 338-63 chr10 60108343 60108624 + 2 NA intron (NM_001204403, intron 28 of 43) intron (NM_001204403, intron 28 of 43) 32533 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 413-29 chr10 21383524 21383921 + 2 NA Intergenic MER39|LTR|ERV1 -10772 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 513-175 chr3 30532457 30532943 + 2 NA Intergenic MER21C|LTR|ERVL 13832 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 334-367 chr3 170201274 170201505 + 2 NA Intergenic AluSx|SINE|Alu -19656 NM_001308116 80012 Hs.529592 NM_024947 ENSG00000173889 PHC3 EDR3|HPH3 polyhomeotic homolog 3 protein-coding 366-418 chr7 99886823 99887075 + 2 NA Intergenic MER49|LTR|ERV1 -9916 NM_001005276 81392 Hs.647523 NM_001005276 ENSG00000244623 OR2AE1 OR2AE2 olfactory receptor family 2 subfamily AE member 1 protein-coding 297-284 chr3 8894138 8894330 + 2 NA intron (NM_020165, intron 11 of 12) intron (NM_020165, intron 11 of 12) 69238 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 360-400 chr6 48996618 48996963 + 2 NA Intergenic LTR42|LTR|ERVL 466463 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 451-72 chr14 72822375 72822743 + 2 NA intron (NM_001280542, intron 1 of 10) L1ME4b|LINE|L1 70090 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 268-120 chr14 66087104 66087305 + 2 NA Intergenic Intergenic -399167 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 305-201 chr17 69561270 69561434 + 2 NA Intergenic Intergenic -32635 NR_109971 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 246-226 chr20 342307 342473 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -4336 NR_136649 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 595-61 chr16 77420538 77420953 + 2 NA intron (NM_199355, intron 3 of 22) intron (NM_199355, intron 3 of 22) 14289 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 237-213 chr20 55032731 55032965 + 2 NA Intergenic MER66-int|LTR|ERV1 -390195 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 390-110 chr14 84882303 84882623 + 2 NA Intergenic L1MEd|LINE|L1 -389469 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 137-48 chr2 125047200 125047291 + 2 NA Intergenic Intergenic 1021958 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 296-286 chr3 24220475 24220737 + 2 NA intron (NM_001354714, intron 2 of 8) intron (NM_001354714, intron 2 of 8) 69282 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 218-101 chr15 25492003 25492150 + 2 NA Intergenic L1MB7|LINE|L1 -53020 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 644-19 chr14 43501068 43501482 + 2 NA Intergenic Intergenic 1006008 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 372-247 chr2 105658326 105658552 + 2 NA Intergenic L1MB2|LINE|L1 -47880 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 201-165 chr3 177862404 177862571 + 2 NA intron (NR_110826, intron 1 of 2) L1M3b|LINE|L1 45622 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 312-77 chr11 35966589 35966830 + 2 NA intron (NM_001304264, intron 1 of 5) intron (NM_001304264, intron 1 of 5) 22647 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 476-127 chr19 33895859 33896191 + 2 NA Intergenic AluSz|SINE|Alu 99155 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 271-442 chr8 91294030 91294292 + 2 NA intron (NM_134266, intron 3 of 18) intron (NM_134266, intron 3 of 18) 44842 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 347-187 chr19 2851486 2851702 + 2 NA exon (NM_001172775, exon 3 of 4) exon (NM_001172775, exon 3 of 4) 10119 NM_152791 148254 Hs.47712 NM_152791 ENSG00000186300 ZNF555 - zinc finger protein 555 protein-coding 356-403 chr5 89455760 89455976 + 2 NA intron (NR_136221, intron 5 of 6) intron (NR_136221, intron 5 of 6) -551763 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 347-124 chr14 45544016 45544267 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 171461 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 264-31 chr10 6895164 6895316 + 2 NA Intergenic L1MEc|LINE|L1 115642 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 410-271 chr6 165927838 165928120 + 2 NA intron (NR_026861, intron 1 of 1) AluSz|SINE|Alu -59572 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 403-124 chr16 80110618 80110952 + 2 NA Intergenic MER113A|DNA|hAT-Charlie 315536 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 361-362 chr5 62724282 62724548 + 2 NA Intergenic Intergenic 145596 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 370-336 chr4 39439990 39440176 + 2 NA intron (NM_175737, intron 3 of 4) AluSx1|SINE|Alu 18865 NM_000661 6133 Hs.412370 NM_000661 ENSG00000163682 RPL9 L9|NPC-A-16 ribosomal protein L9 protein-coding 239-281 chr4 74992865 74993047 + 2 NA intron (NM_015393, intron 1 of 3) L1MEc|LINE|L1 -22594 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 300-347 chr5 17466205 17466405 + 2 NA intron (NR_134270, intron 1 of 2) intron (NR_134270, intron 1 of 2) 22295 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 577-152 chr5 102611702 102612189 + 2 NA non-coding (NR_103754, exon 3 of 4) non-coding (NR_103754, exon 3 of 4) 30577 NR_047462 100861468 Hs.519483 NR_047462 ENSG00000250958 LINC00492 - long intergenic non-protein coding RNA 492 ncRNA 193-61 chr14 58823035 58823188 + 2 NA Intergenic Intergenic -5177 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 276-105 chr12 21121256 21121471 + 2 NA Intergenic Intergenic -9831 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 324-140 chr13 68344292 68344610 + 2 NA Intergenic L2|LINE|L2 540874 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 366-316 chr4 91254038 91254375 + 2 NA intron (NM_001145065, intron 10 of 10) L1M4c|LINE|L1 1019175 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 366-73 chr11 26344808 26345050 + 2 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) 12799 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 267-224 chr2 231859335 231859468 + 2 NA Intergenic Intergenic 32897 NR_031717 100302126 NR_031717 ENSG00000222246 MIR1471 MIRN1471|hsa-mir-1471 microRNA 1471 ncRNA 557-119 chr2 230146911 230147269 + 2 NA Intergenic Intergenic 72894 NM_004510 3431 Hs.145150 NM_004509 ENSG00000135899 SP110 IFI41|IFI75|IPR1|VODI SP110 nuclear body protein protein-coding 125-41 chr3 188565980 188566061 + 2 NA intron (NR_046623, intron 1 of 1) intron (NR_046623, intron 1 of 1) 2646 NR_046623 100873917 Hs.674993 NR_046623 ENSG00000224563 LPP-AS1 - LPP antisense RNA 1 ncRNA 241-167 chr19 37710618 37710758 + 2 NA intron (NM_001172677, intron 2 of 4) intron (NM_001172677, intron 2 of 4) 8500 NM_001172677 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 223-18 chr1 172218883 172219015 + 2 NA intron (NR_146559, intron 15 of 20) HAL1ME|LINE|L1 -74114 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 366-440 chr8 80431548 80431875 + 2 NA Intergenic Intergenic -53882 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 325-314 chr20 61757292 61757559 + 2 NA intron (NM_001252339, intron 2 of 14) intron (NM_001252339, intron 2 of 14) -37677 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 842-37 chr5 20948499 20949140 + 2 NA Intergenic L1MC1|LINE|L1 -333284 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 341-65 chr10 74369754 74370086 + 2 NA intron (NM_001369124, intron 4 of 9) L1M4|LINE|L1 159404 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 187-21 chr10 48608857 48608958 + 2 NA intron (NM_001347738, intron 2 of 10) MER63B|DNA|hAT-Blackjack -3776 NM_001347737 58504 Hs.655672 NM_021226 ENSG00000128805 ARHGAP22 RhoGAP2|RhoGap22 Rho GTPase activating protein 22 protein-coding 317-496 chr8 112548642 112548809 + 2 NA intron (NM_001363185, intron 25 of 66) intron (NM_001363185, intron 25 of 66) -94768 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 365-157 chr17 80038037 80038265 + 2 NA exon (NM_001243342, exon 2 of 18) exon (NM_001243342, exon 2 of 18) 1509 NM_001330508 55036 Hs.202542 NM_017950 ENSG00000141519 CCDC40 CILD15|FAP172 coiled-coil domain containing 40 protein-coding 242-126 chr16 52346560 52346752 + 2 NA Intergenic L1M4|LINE|L1 88092 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 375-99 chr12 40928838 40929169 + 2 NA intron (NM_001256064, intron 6 of 15) intron (NM_001256064, intron 6 of 15) 20646 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 277-237 chr21 29446540 29446716 + 2 NA Intergenic AluJb|SINE|Alu -49419 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 396-369 chr9 29985498 29985857 + 2 NA Intergenic MER101-int|LTR|ERV1 422777 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 260-318 chr4 92978748 92978911 + 2 NA intron (NM_001286838, intron 2 of 14) AluJr|SINE|Alu 674430 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 443-257 chr6 14472846 14473216 + 2 NA Intergenic Intergenic -187577 NR_108097 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 368-469 chr8 129795520 129795727 + 2 NA Intergenic L1PBa|LINE|L1 -8999 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 439-99 chr15 69876193 69876530 + 2 NA Intergenic Intergenic 41127 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 195-11 chr1 179414124 179414284 + 2 NA intron (NR_073544, intron 12 of 25) intron (NR_073544, intron 12 of 25) 48160 NR_073544 126859 Hs.658505 NM_144696 ENSG00000162779 AXDND1 C1orf125 axonemal dynein light chain domain containing 1 protein-coding 178-158 chr9 37706204 37706369 + 2 NA intron (NM_001371225, intron 2 of 15) Tigger15a|DNA|TcMar-Tigger 38277 NM_001371223 407-76 chr13 112145650 112146006 + 2 NA Intergenic Intergenic 14882 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 303-54 chr10 92398191 92398370 + 2 NA Intergenic AluYa5|SINE|Alu -20381 NR_038243 100507674 Hs.568772 NR_038243 MARK2P9 - microtubule affinity regulating kinase 2 pseudogene 9 pseudo 741-67 chr7 110480803 110481251 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -520814 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 400-118 chr16 59945528 59945897 + 2 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 90359 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 117-38 chr7 7921692 7921761 + 2 NA Intergenic Intergenic 47026 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 247-166 chr18 13457017 13457202 + 2 NA intron (NM_181482, intron 4 of 5) MER21A|LTR|ERVL -2838 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 281-203 chr2 50374482 50374633 + 2 NA intron (NM_001330093, intron 17 of 22) intron (NM_001330093, intron 17 of 22) -26801 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 352-518 chr8 36098308 36098501 + 2 NA Intergenic Intergenic -388084 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 186-11 chr1 178225165 178225301 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) -116218 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 375-88 chr11 116064498 116064712 + 2 NA Intergenic Intergenic -304405 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 166-39 chr17 81208991 81209131 + 2 NA intron (NM_001319228, intron 2 of 25) intron (NM_001319228, intron 2 of 25) 13904 NM_014984 22994 Hs.514578 NM_014984 ENSG00000141577 CEP131 AZ1|AZI1|ZA1 centrosomal protein 131 protein-coding 323-488 chr7 33850774 33850976 + 2 NA Intergenic Intergenic -54040 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 317-45 chr10 28482272 28482491 + 2 NA intron (NR_134496, intron 1 of 2) intron (NR_134496, intron 1 of 2) 13432 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 189-90 chr2 59773347 59773469 + 2 NA Intergenic Intergenic 555700 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 243-196 chr2 31925527 31925696 + 2 NA intron (NM_001137602, intron 2 of 7) Charlie1a|DNA|hAT-Charlie 85053 NM_015955 51072 Hs.444969 NM_015955 ENSG00000162959 MEMO1 C2orf4|CGI-27|MEMO|NS5ATP7 mediator of cell motility 1 protein-coding 243-11 chr1 80659028 80659160 + 2 NA Intergenic Intergenic 17807 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 1031-12 chr3 146695894 146696554 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -90008 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 235-323 chr7 35734754 35734930 + 2 NA Intergenic Intergenic 18405 NR_108083 100506725 Hs.304253 NR_108082 ENSG00000227544 LOC100506725 - uncharacterized LOC100506725 ncRNA 361-334 chr4 150994697 150994954 + 2 NA intron (NM_001367550, intron 2 of 56) L1MEd|LINE|L1 20442 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 307-20 chr1 116196730 116196998 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie 85109 NM_152367 126868 Hs.376194 NM_152367 ENSG00000173212 MAB21L3 C1orf161 mab-21 like 3 protein-coding 210-282 chr8 66143036 66143221 + 2 NA intron (NM_184087, intron 4 of 4) intron (NM_184087, intron 4 of 4) 15999 NM_184087 84675 Hs.85524 NM_033058 ENSG00000147573 TRIM55 MURF-2|RNF29|muRF2 tripartite motif containing 55 protein-coding 239-260 chr3 147639882 147640113 + 2 NA Intergenic MIRb|SINE|MIR 218670 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 827-37 chr4 92893901 92894384 + 2 NA intron (NM_001286838, intron 2 of 14) L3|LINE|CR1 589743 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 471-177 chr3 183444415 183444733 + 2 NA Intergenic L1ME4b|LINE|L1 -3034 NR_038302 100505687 Hs.551751 NR_038301 ENSG00000240024 LINC00888 - long intergenic non-protein coding RNA 888 ncRNA 404-248 chr5 9172863 9173116 + 2 NA intron (NM_003966, intron 11 of 22) intron (NM_003966, intron 11 of 22) -119094 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 364-28 chr1 174617260 174617529 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) -83145 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 366-318 chr4 91574289 91574623 + 2 NA intron (NM_001145065, intron 10 of 10) L1PA16|LINE|L1 702846 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 340-247 chr2 57093785 57093978 + 2 NA Intergenic Intergenic -813770 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 219-380 chr9 68933381 68933513 + 2 NA intron (NM_003558, intron 12 of 15) intron (NM_003558, intron 12 of 15) 42394 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 449-99 chr17 61652776 61653118 + 2 NA Intergenic L1MCa|LINE|L1 -61728 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 237-350 chr7 27194218 27194382 + 2 NA TTS (NM_000522) TTS (NM_000522) 5791 NM_000522 3209 Hs.592172 NM_000522 ENSG00000106031 HOXA13 HOX1|HOX1J homeobox A13 protein-coding 609-104 chr5 89121986 89122531 + 2 NA intron (NR_136221, intron 4 of 6) (TG)n|Simple_repeat|Simple_repeat -218153 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 359-475 chr8 84457999 84458346 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 42688 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 497-128 chr2 76958983 76959322 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -26813 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 646-140 chrX 94565500 94565995 + 2 NA Intergenic L1MA4A|LINE|L1 497479 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 627-23 chr12 131684343 131684818 + 2 NA Intergenic MIR|SINE|MIR -26510 NM_001261411 6433 Hs.308171 NM_004592 ENSG00000061936 SFSWAP SFRS8|SWAP splicing factor SWAP protein-coding 430-81 chr14 49049941 49050191 + 2 NA Intergenic Intergenic 536314 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 264-164 chr17 32677086 32677285 + 2 NA intron (NM_015194, intron 16 of 21) intron (NM_015194, intron 16 of 21) 190192 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 554-166 chr4 162688383 162688843 + 2 NA Intergenic Intergenic 405015 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 399-306 chr8 83623497 83623723 + 2 NA Intergenic L1PREC2|LINE|L1 219852 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 532-253 chr7 106664276 106664776 + 2 NA Intergenic Intergenic -3368 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 501-21 chr10 41782294 41782694 + 2 NA Intergenic ALR/Alpha|Satellite|centr 585551 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 430 chr1 25000279 25000538 + 2 NA Intergenic AluSz|SINE|Alu -23095 NR_039623 100616365 NR_039623 ENSG00000264371 MIR4425 - microRNA 4425 ncRNA 648-98 chr3 174304887 174305421 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -384358 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 359-517 chrX 31109635 31109958 + 2 NA Intergenic Intergenic -37755 NM_031894 53940 Hs.333125 NM_031894 ENSG00000132446 FTHL17 CT38 ferritin heavy chain like 17 protein-coding 248-8 chr1 70347477 70347652 + 2 NA intron (NM_030816, intron 1 of 12) intron (NM_030816, intron 1 of 12) 7158 NM_030816 81573 Hs.744989 NM_030816 ENSG00000118454 ANKRD13C dJ677H15.3 ankyrin repeat domain 13C protein-coding 1149-4 chr18 8928137 8928874 + 2 NA Intergenic Intergenic -174194 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 246-431 chr9 75425033 75425203 + 2 NA Intergenic Intergenic 336604 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 459-63 chr12 33927860 33928212 + 2 NA Intergenic Intergenic -94460 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 336-276 chr2 99381029 99381309 + 2 NA intron (NM_015904, intron 12 of 23) intron (NM_015904, intron 12 of 23) 43780 NM_015904 9669 Hs.158688 NM_015904 ENSG00000158417 EIF5B IF2 eukaryotic translation initiation factor 5B protein-coding 224-278 chr6 71481302 71481518 + 2 NA Intergenic Intergenic 60383 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 234-291 chr4 155995038 155995215 + 2 NA Intergenic Intergenic -41260 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 321-263 chr19 37709345 37709539 + 2 NA intron (NM_032689, intron 3 of 4) intron (NM_032689, intron 3 of 4) 9746 NM_001172677 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 409-156 chr2 173037973 173038244 + 2 NA intron (NM_001282901, intron 23 of 24) intron (NM_001282901, intron 23 of 24) -37738 NM_016653 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 420-118 chr19 52454974 52455267 + 2 NA intron (NM_001099694, intron 1 of 5) L2a|LINE|L2 1567 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 495-131 chr20 15274186 15274453 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 77479 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 340-336 chr21 30080181 30080367 + 2 NA Intergenic Intergenic 86531 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 354-424 chr7 36136506 36136825 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -16589 NM_030636 80820 Hs.487994 NM_030636 ENSG00000122547 EEPD1 HSPC107 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 243-180 chr18 39547976 39548129 + 2 NA intron (NR_024391, intron 2 of 3) intron (NR_024391, intron 2 of 3) 74123 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 344-46 chr10 36160828 36161024 + 2 NA Intergenic Intergenic 382624 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 352-561 chr9 33843943 33844207 + 2 NA intron (NM_017811, intron 1 of 4) Cheshire|DNA|hAT-Charlie 26915 NM_017811 54926 Hs.643648 NM_017811 ENSG00000107341 UBE2R2 CDC34B|E2-CDC34B|UBC3B ubiquitin conjugating enzyme E2 R2 protein-coding 573-163 chr6 45027619 45028098 + 2 NA intron (NM_001350327, intron 2 of 9) HAL1|LINE|L1 169912 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 354-312 chr3 185358432 185358747 + 2 NA intron (NM_001242317, intron 2 of 12) L4_C_Mam|LINE|RTE-X -4547 NM_004721 9175 Hs.591306 NM_004721 ENSG00000073803 MAP3K13 LZK|MEKK13|MLK mitogen-activated protein kinase kinase kinase 13 protein-coding 455-67 chr13 95667757 95668180 + 2 NA Intergenic L1M1|LINE|L1 8957 NR_132117 100289274 Hs.594844 NR_132117 ENSG00000247400 DNAJC3-DT DNAJC3-AS1 DNAJC3 divergent transcript ncRNA 344-384 chr5 46215826 46216164 + 2 NA Intergenic ALR/Alpha|Satellite|centr -519615 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 139-89 chr8 101579851 101579954 + 2 NA intron (NM_024915, intron 7 of 15) intron (NM_024915, intron 7 of 15) 87463 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 363-147 chr14 84721794 84722091 + 2 NA Intergenic L1PA16|LINE|L1 -549990 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 665-19 chr12 7441201 7441668 + 2 NA intron (NM_001297650, intron 1 of 19) intron (NM_001297650, intron 1 of 19) 2751 NM_001297650 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 474-165 chr20 18145262 18145643 + 2 NA intron (NM_020536, intron 2 of 9) intron (NM_020536, intron 2 of 9) 353 NR_028402 57325 Hs.488051 NM_020536 ENSG00000149474 KAT14 ATAC2|CRP2BP|CSRP2BP|PRO1194|dJ717M23.1 lysine acetyltransferase 14 protein-coding 235-70 chr11 104660170 104660365 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -50965 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 125-16 chr14 56679770 56679866 + 2 NA Intergenic MIRb|SINE|MIR 100020 NM_017799 54916 Hs.497253 NM_017799 ENSG00000070269 TMEM260 C14orf101|SHDRA transmembrane protein 260 protein-coding 287-392 chr7 154567510 154567737 + 2 NA intron (NM_001290252, intron 5 of 23) intron (NM_001290252, intron 5 of 23) 262464 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 287-46 chr10 25135280 25135447 + 2 NA intron (NR_120649, intron 6 of 7) L1MB3|LINE|L1 22305 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 219-353 chr8 51017411 51017582 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 791949 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 302-50 chr10 69979006 69979157 + 2 NA Intergenic L1MB7|LINE|L1 -73765 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 507-127 chr2 81951858 81952201 + 2 NA Intergenic Intergenic -485083 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 229-355 chr7 37553221 37553418 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -103993 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 330-294 chr2 139755513 139755802 + 2 NA Intergenic L1MA1|LINE|L1 831028 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 616-120 chr4 58218223 58218593 + 2 NA Intergenic Intergenic 317920 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 322-474 chr6 165137941 165138257 + 2 NA Intergenic Intergenic 171506 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 518-60 chr11 105458901 105459286 + 2 NA Intergenic L1MA3|LINE|L1 -150980 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 317-545 chrX 56419045 56419307 + 2 NA Intergenic Intergenic -144417 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 358-120 chr14 57678095 57678278 + 2 NA intron (NM_001352014, intron 1 of 9) L1PA7|LINE|L1 -184329 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 348-78 chr11 31854397 31854703 + 2 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) 27983 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 254-39 chr10 54146099 54146283 + 2 NA intron (NM_001354411, intron 15 of 34) intron (NM_001354411, intron 15 of 34) -340039 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 517-57 chr12 34631757 34632123 + 2 NA Intergenic ALR/Alpha|Satellite|centr 609444 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 503-192 chr3 34990414 34990817 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 403408 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 241-393 chr8 74573756 74573979 + 2 NA Intergenic Intergenic -25258 NR_049871 100847091 NR_049871 ENSG00000283505 MIR5681B - microRNA 5681b ncRNA 564-35 chr11 96804616 96804984 + 2 NA Intergenic Intergenic 296375 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 471-262 chr8 84167582 84168021 + 2 NA Intergenic Helitron3Na_Mam|RC|Helitron -14986 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 324-411 chr4 172687775 172687982 + 2 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) 1039 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 293-195 chr2 104424999 104425232 + 2 NA Intergenic Intergenic -9232 NR_015399 150568 Hs.107284 NR_015399 ENSG00000235597 LINC01102 - long intergenic non-protein coding RNA 1102 ncRNA 215-222 chr4 65862692 65862842 + 2 NA Intergenic Intergenic -192272 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 778-55 chr5 91548818 91549405 + 2 NA Intergenic L1P4|LINE|L1 -165794 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 272-367 chr5 162217229 162217468 + 2 NA Intergenic Intergenic 149706 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 214-128 chr17 59067383 59067538 + 2 NA intron (NR_148346, intron 9 of 23) intron (NR_148346, intron 9 of 23) 39420 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 213-81 chr13 85826961 85827119 + 2 NA Intergenic Intergenic -27621 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 332-47 chr10 10597299 10597540 + 2 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 134869 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 402-102 chr16 10552425 10552776 + 2 NA intron (NM_001424, intron 1 of 4) MER113|DNA|hAT-Charlie -24402 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 302-111 chr13 48873972 48874226 + 2 NA Intergenic Intergenic -101813 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 318-553 chr8 125965011 125965248 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -13932 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 338-167 chr14 67272807 67273021 + 2 NA intron (NM_001256550, intron 2 of 14) AluSz6|SINE|Alu 31479 NM_022474 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 360-175 chr17_GL000205v2_random 5181 5442 + 2 NA Intergenic CER|Satellite|Satellite 52655 NR_003682 403340 Hs.572501 NR_003682 MGC70870 - C-terminal binding protein 2 pseudogene pseudo 216-209 chr3 25029628 25029838 + 2 NA intron (NM_001290216, intron 2 of 10) UCON28c|Unknown|Unknown 200410 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 550-220 chr7 108541274 108541684 + 2 NA Intergenic Intergenic -13301 NM_001256011 50640 Hs.617340 NM_015723 ENSG00000135241 PNPLA8 IPLA2-2|IPLA2G|MMLA|PNPLA-gamma|iPLA2gamma patatin like phospholipase domain containing 8 protein-coding 313-246 chr2 45168579 45168841 + 2 NA Intergenic Intergenic 86231 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 421-269 chr6 145932678 145933023 + 2 NA intron (NM_001370328, intron 16 of 31) L1ME4c|LINE|L1 31247 NM_173082 257218 Hs.723297 NM_173082 ENSG00000146414 SHPRH bA545I5.2 SNF2 histone linker PHD RING helicase protein-coding 271-460 chr8 128055338 128055586 + 2 NA intron (NR_003367, intron 5 of 8) MIRb|SINE|MIR 6310 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 252-436 chr8 123125930 123126099 + 2 NA intron (NM_001363149, intron 11 of 21) intron (NM_001363149, intron 11 of 21) 52765 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 268-440 chr9 85478089 85478250 + 2 NA Intergenic MIRb|SINE|MIR 263860 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 521-140 chr20 9214687 9215028 + 2 NA intron (NM_001172646, intron 1 of 37) intron (NM_001172646, intron 1 of 37) -2533 NM_182797 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 298-194 chr2 2158014 2158186 + 2 NA intron (NM_015025, intron 3 of 24) intron (NM_015025, intron 3 of 24) -161132 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 405-288 chr6 139129774 139130046 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -5170 NM_016217 51696 Hs.197644 NM_016217 ENSG00000112406 HECA HDC|HDCL|HHDC|dJ225E12.1 hdc homolog, cell cycle regulator protein-coding 553-72 chr15 98209669 98210052 + 2 NA Intergenic L1MEf|LINE|L1 -121107 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 349-106 chr11 106875382 106875583 + 2 NA intron (NM_001256424, intron 4 of 8) MLT1K|LTR|ERVL-MaLR 142994 NM_000855 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 197-91 chr2 34520793 34520941 + 2 NA Intergenic L1ME3|LINE|L1 -156690 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 462-22 chr10 23737588 23737972 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 43053 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 428-95 chr17 69524017 69524316 + 2 NA intron (NM_001330450, intron 8 of 11) MLT1A0|LTR|ERVL-MaLR 21904 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 525-212 chr5 155440277 155440705 + 2 NA Intergenic Intergenic 426736 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 388-123 chr16 54955920 54956141 + 2 NA Intergenic MIR|SINE|MIR 24831 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 608-28 chr12 14146914 14147376 + 2 NA Intergenic LTR33|LTR|ERVL -166789 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 366-167 chr17 63225470 63225689 + 2 NA intron (NM_025185, intron 6 of 25) L2|LINE|L2 214688 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 339-435 chr4 184157975 184158293 + 2 NA intron (NM_153343, intron 1 of 7) L2c|LINE|L2 59739 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 286-16 chr1 86616146 86616360 + 2 NA intron (NR_135837, intron 4 of 4) L2b|LINE|L2 -18023 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 164-71 chr22 26262673 26262827 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 93276 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 364-209 chr2 77689811 77690071 + 2 NA Intergenic L1MEb|LINE|L1 -167508 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 181-80 chr2 236781464 236781615 + 2 NA Intergenic Intergenic 211714 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 323-82 chr11 50154999 50155177 + 2 NA Intergenic Intergenic 122214 NR_160275 403257 Hs.554533 NM_001005513 ENSG00000260811 OR4C45 - olfactory receptor family 4 subfamily C member 45 (gene/pseudogene) protein-coding 319-304 chr21 30917153 30917428 + 2 NA Intergenic Intergenic -35710 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 293-144 chr16 68653394 68653606 + 2 NA intron (NM_001793, intron 2 of 15) AluSp|SINE|Alu 8190 NM_001317195 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 529-157 chr4 44059906 44060259 + 2 NA Intergenic L2b|LINE|L2 43020 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 335-255 chr2 105008431 105008633 + 2 NA intron (NR_110603, intron 1 of 2) L1ME1|LINE|L1 -29537 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 340-412 chr4 103450305 103450486 + 2 NA Intergenic Intergenic 25353 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 337-304 chr20 15957849 15958049 + 2 NA intron (NM_001351663, intron 12 of 17) intron (NM_001351663, intron 12 of 17) 27933 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 240-182 chr17 71949172 71949313 + 2 NA Intergenic MIRc|SINE|MIR 76737 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 392-107 chr16 80134194 80134570 + 2 NA Intergenic L1ME1|LINE|L1 339133 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 338-4 chr1 40594226 40594479 + 2 NA Intergenic Intergenic 62715 NM_152373 127396 Hs.524767 NM_152373 ENSG00000117010 ZNF684 - zinc finger protein 684 protein-coding 305-82 chr10 114296093 114296279 + 2 NA intron (NM_001001936, intron 18 of 18) intron (NM_001001936, intron 18 of 18) 56572 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 244-179 chr2 181617358 181617588 + 2 NA intron (NR_027690, intron 1 of 11) Charlie1a|DNA|hAT-Charlie 39632 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 234-11 chr1 100786590 100786752 + 2 NA Intergenic Intergenic 66929 NM_001078 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 304-347 chr3 99952737 99952889 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 11585 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 307-24 chr1 163555091 163555269 + 2 NA Intergenic L1ME1|LINE|L1 -131989 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 215-312 chr8 74213577 74213775 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 107685 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 440-190 chr5 19893015 19893449 + 2 NA intron (NM_001349562, intron 2 of 13) MLT1A0|LTR|ERVL-MaLR -6960 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 390-36 chr10 52146564 52146826 + 2 NA intron (NM_001098512, intron 8 of 17) intron (NM_001098512, intron 8 of 17) 167433 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 302-365 chr5 162656260 162656557 + 2 NA Intergenic L2c|LINE|L2 588766 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 315-369 chr5 27437001 27437282 + 2 NA Intergenic Intergenic -35151 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 466-24 chr10 10185378 10185719 + 2 NA Intergenic HAL1|LINE|L1 126826 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 273-195 chr19 19698468 19698678 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 29734 NM_033204 94039 Hs.63187 NM_033204 ENSG00000181896 ZNF101 HZF12 zinc finger protein 101 protein-coding 752-22 chr15 88754906 88755467 + 2 NA Intergenic AluSg|SINE|Alu -48250 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 265-156 chr18 52282008 52282198 + 2 NA Intergenic L1ME3|LINE|L1 -58094 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 227-131 chr16 75928296 75928503 + 2 NA Intergenic Intergenic -201909 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 446-173 chr22 31007165 31007465 + 2 NA Intergenic AluY|SINE|Alu 38104 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 518-125 chr2 35075855 35076339 + 2 NA Intergenic Intergenic -395308 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 491-165 chr3 29112438 29112781 + 2 NA Intergenic HAL1|LINE|L1 168330 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 272-8 chr1 74048771 74048963 + 2 NA intron (NM_001105659, intron 6 of 7) L2a|LINE|L2 149309 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 383-25 chr1 234363788 234364148 + 2 NA Intergenic AluSx|SINE|Alu 9435 NR_125962 101927765 Hs.596703 NR_125961 ENSG00000231663 COA6-AS1 - COA6 antisense RNA 1 ncRNA 377-347 chr6 74102707 74103063 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 33434 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 590-167 chr8 112989000 112989380 + 2 NA intron (NM_198123, intron 6 of 70) intron (NM_198123, intron 6 of 70) 345697 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 431-249 chr6 91426520 91426910 + 2 NA Intergenic Intergenic -94945 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 282-126 chr14 53562881 53563156 + 2 NA Intergenic L1ME1|LINE|L1 385466 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 372-130 chr13 83460118 83460403 + 2 NA Intergenic L1ME1|LINE|L1 422133 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 558-167 chr5 3158594 3158980 + 2 NA Intergenic Intergenic -19048 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 180-69 chr18 11686829 11686983 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -2358 NM_182978 2774 Hs.136295 NM_002071 ENSG00000141404 GNAL DYT25 G protein subunit alpha L protein-coding 400-203 chr22 33936028 33936340 + 2 NA Intergenic L3b|LINE|CR1 -13296 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 150-29 chr12 74910730 74910822 + 2 NA Intergenic Intergenic 298972 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 261-166 chr19 30251327 30251558 + 2 NA Intergenic Intergenic -120942 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 370-328 chr4 22535625 22535906 + 2 NA Intergenic Intergenic -19699 NM_145290 166647 Hs.99195 NM_145290 ENSG00000152990 ADGRA3 GPR125|PGR21|TEM5L adhesion G protein-coupled receptor A3 protein-coding 447-288 chr9 28468018 28468393 + 2 NA intron (NM_152570, intron 3 of 6) L1MB4|LINE|L1 251100 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 304-248 chr2 47206992 47207161 + 2 NA intron (NR_110208, intron 3 of 4) intron (NR_110208, intron 3 of 4) -30140 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 255-335 chr5 106040909 106041134 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 941547 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 187-175 chr8 118993789 118993934 + 2 NA intron (NM_001324095, intron 1 of 7) MLT1B|LTR|ERVL-MaLR 41598 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 403-241 chr5 27083007 27083303 + 2 NA Intergenic Intergenic -44569 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 310-12 chr1 105983877 105984090 + 2 NA intron (NR_146609, intron 5 of 5) L1P4|LINE|L1 44270 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 322-46 chr1 239465438 239465625 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 78963 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 298-359 chr5 32990171 32990351 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie 42818 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 298-174 chr18 12994001 12994272 + 2 NA intron (NM_032142, intron 1 of 44) L2a|LINE|L2 2774 NM_032142 55125 Hs.100914 NM_018069 ENSG00000101639 CEP192 PPP1R62 centrosomal protein 192 protein-coding 245-139 chr15 35737917 35738101 + 2 NA intron (NR_038251, intron 2 of 2) L1M5|LINE|L1 -188847 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 379-123 chr17 75379762 75379957 + 2 NA intron (NM_002086, intron 2 of 5) intron (NM_002086, intron 2 of 5) 25819 NM_002086 2885 Hs.444356 NM_002086 ENSG00000177885 GRB2 ASH|EGFRBP-GRB2|Grb3-3|MST084|MSTP084|NCKAP2 growth factor receptor bound protein 2 protein-coding 208-75 chr14 64329640 64329792 + 2 NA intron (NM_001291712, intron 2 of 13) intron (NM_001291712, intron 2 of 13) 8834 NM_001291723 2100 Hs.660607 NM_001437 ENSG00000140009 ESR2 ER-BETA|ESR-BETA|ESRB|ESTRB|Erb|NR3A2|ODG8 estrogen receptor 2 protein-coding 321-59 chr10 53441894 53442172 + 2 NA Intergenic Intergenic -670333 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 327-313 chr22 25137833 25138098 + 2 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -25273 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 375-55 chr10 83185918 83186255 + 2 NA Intergenic Intergenic 491003 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 242-153 chr19 28473949 28474093 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) -132667 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 392-360 chrX 69908417 69908669 + 2 NA intron (NM_001005609, intron 1 of 7) intron (NM_001005609, intron 1 of 7) -114314 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 366-186 chr2 7722230 7722441 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger 177320 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 374-336 chr6 45185503 45185794 + 2 NA intron (NM_001350325, intron 2 of 10) MER65B|LTR|ERV1 12122 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 462-178 chr3 61510270 61510684 + 2 NA Intergenic L1M5|LINE|L1 -51094 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 214-109 chr15 86002180 86002343 + 2 NA Intergenic Intergenic -77359 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 496-207 chr5 17758412 17758718 + 2 NA Intergenic Intergenic -48709 NR_134287 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 368-211 chr18 66835145 66835374 + 2 NA Intergenic Intergenic -231169 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 497-228 chr5 56914259 56914696 + 2 NA 3' UTR (NM_001323019, exon 4 of 4) 3' UTR (NM_001323019, exon 4 of 4) 4415 NR_136557 133383 Hs.85950 NM_153706 ENSG00000155542 SETD9 C5orf35 SET domain containing 9 protein-coding 252-211 chr2 133661865 133662020 + 2 NA Intergenic Intergenic -93479 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 518-185 chr3 124118747 124119097 + 2 NA intron (NM_001024660, intron 1 of 59) MIRc|SINE|MIR -14007 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 141-43 chr2 212469920 212470043 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) -43621 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 362-189 chr17 51865481 51865802 + 2 NA intron (NM_001082533, intron 4 of 9) MIRb|SINE|MIR 293073 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 454-305 chr8 46472854 46473215 + 2 NA Intergenic ALR/Alpha|Satellite|centr 144609 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 338-97 chr11 43791892 43792094 + 2 NA intron (NM_016142, intron 3 of 10) intron (NM_016142, intron 3 of 10) -88838 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 702-41 chr2 24615282 24615804 + 2 NA intron (NM_001362950, intron 3 of 23) intron (NM_001362950, intron 3 of 23) 31066 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 400-142 chr18 71916770 71917060 + 2 NA Intergenic L1MCa|LINE|L1 -134689 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 243-40 chr10 43734548 43734756 + 2 NA Intergenic L1M4|LINE|L1 44173 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 289-330 chr4 25557060 25557333 + 2 NA intron (NR_134641, intron 1 of 3) intron (NR_134641, intron 1 of 3) 12150 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 272-488 chrX 68755837 68756081 + 2 NA Intergenic L2c|LINE|L2 62320 NM_001142504 9754 Hs.95140 NM_014725 ENSG00000130052 STARD8 ARHGAP38|DLC3|STARTGAP3 StAR related lipid transfer domain containing 8 protein-coding 269-284 chr4 89475786 89476041 + 2 NA Intergenic Intergenic -168113 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 287-345 chr6 37417671 37417857 + 2 NA Intergenic L1ME1|LINE|L1 -15457 NM_015050 23070 Hs.520102 NM_015050 ENSG00000137200 CMTR1 FTSJD2|KIAA0082|MTr1|hMTr1 cap methyltransferase 1 protein-coding 517-47 chr11 83475447 83475744 + 2 NA intron (NM_001142699, intron 22 of 27) intron (NM_001142699, intron 22 of 27) -189188 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 139-44 chr2 111640858 111640951 + 2 NA Intergenic MIR|SINE|MIR 130230 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 286-372 chr5 163864312 163864529 + 2 NA Intergenic Intergenic 358801 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 219-379 chr9 30499760 30499930 + 2 NA Intergenic Intergenic -91391 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 575-142 chr5 19693075 19693487 + 2 NA intron (NM_001349562, intron 5 of 13) intron (NM_001349562, intron 5 of 13) 192991 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 485-10 chr1 90145601 90145945 + 2 NA Intergenic Intergenic 150663 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 376-52 chr10 67767212 67767503 + 2 NA Intergenic Intergenic 70822 NM_201262 56521 Hs.260720 NM_021800 ENSG00000108176 DNAJC12 HPANBH4|JDP1 DnaJ heat shock protein family (Hsp40) member C12 protein-coding 237-243 chr3 86925015 86925194 + 2 NA Intergenic MLT2D|LTR|ERVL 66045 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 349-261 chr2 100686822 100687026 + 2 NA Intergenic L1MEg|LINE|L1 83185 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 211-293 chr8 26749424 26749621 + 2 NA intron (NM_001322503, intron 1 of 1) L2a|LINE|L2 116133 NM_001322504 148 Hs.52931 NM_000680 ENSG00000120907 ADRA1A ADRA1C|ADRA1L1|ALPHA1AAR adrenoceptor alpha 1A protein-coding 229-136 chr16 62646785 62646984 + 2 NA Intergenic MER52-int|LTR|ERV1 -610446 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 212-305 chr7 64860784 64860937 + 2 NA TTS (NR_160268) TTS (NR_160268) -42382 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 420-20 chr1 194056047 194056265 + 2 NA Intergenic LTR78|LTR|ERV1 751411 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 233-76 chr12 34574862 34575037 + 2 NA Intergenic ALR/Alpha|Satellite|centr 552453 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 325-391 chr4 58276399 58276579 + 2 NA Intergenic Intergenic 259839 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 305-75 chr10 94025259 94025457 + 2 NA intron (NM_001288989, intron 1 of 32) MLT1J|LTR|ERVL-MaLR 31427 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 385-269 chr4 63935228 63935537 + 2 NA Intergenic L1MA5|LINE|L1 474068 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 362-82 chr10 130664892 130665144 + 2 NA Intergenic Intergenic 297650 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 587-175 chr9 27078376 27078783 + 2 NA Intergenic Intergenic -30562 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 442-315 chr9 76397912 76398297 + 2 NA promoter-TSS (NR_026890) promoter-TSS (NR_026890) -495 NR_026890 653162 Hs.655646 NR_026890 RPSAP9 LAMR1P9|RPSA_20_986 ribosomal protein SA pseudogene 9 pseudo 211-334 chrX 88815402 88815562 + 2 NA Intergenic Intergenic 68257 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 255-23 chr10 22981370 22981525 + 2 NA exon (NM_001282747, exon 6 of 16) exon (NM_001282747, exon 6 of 16) 53394 NM_173081 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 507-241 chr8 47015714 47016121 + 2 NA Intergenic L1M1|LINE|L1 -173390 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 353-224 chr19 36694252 36694451 + 2 NA intron (NM_001322920, intron 3 of 6) L1ME4b|LINE|L1 6739 NM_001322911 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 201 chr1 8609493 8609654 + 2 NA intron (NM_001042681, intron 4 of 22) intron (NM_001042681, intron 4 of 22) -114660 NR_132752 106632271 NR_132752 SNORD128 ZL43 small nucleolar RNA, C/D box 128 snoRNA 520-171 chr21 18750668 18751019 + 2 NA intron (NR_109925, intron 1 of 3) MER52A|LTR|ERV1 8969 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 338-393 chr4 126762334 126762626 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger -870477 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 298-390 chr6 27432219 27432381 + 2 NA intron (NR_144688, intron 5 of 8) LTR88c|LTR|Gypsy? 40598 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 391-160 chr2 18681346 18681616 + 2 NA Intergenic L2a|LINE|L2 -91901 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 228-54 chr11 38364952 38365133 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 281314 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 291-464 chr8 117346046 117346196 + 2 NA Intergenic L1MA9|LINE|L1 -174592 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 249-430 chr8 119930643 119930796 + 2 NA intron (NM_022783, intron 3 of 8) intron (NM_022783, intron 3 of 8) 56997 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 574-32 chr12 97547236 97547738 + 2 NA intron (NR_152618, intron 8 of 10) L1MA6|LINE|L1 -16325 NR_029678 406926 NR_029678 ENSG00000207586 MIR135A2 MIRN135-2|MIRN135A2|mir-135a-2 microRNA 135a-2 ncRNA 341-141 chr14 29139308 29139550 + 2 NA Intergenic L1MEc|LINE|L1 -353642 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 118-57 chr7 134281515 134281600 + 2 NA Intergenic L1ME4a|LINE|L1 35373 NM_032826 84912 Hs.490181 NM_032826 ENSG00000205060 SLC35B4 YEA|YEA4 solute carrier family 35 member B4 protein-coding 202-226 chr6 68472939 68473100 + 2 NA Intergenic MIRb|SINE|MIR -143120 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 195-33 chr10 128594709 128594870 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner 308839 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 334-65 chr10 81575509 81575697 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -299591 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 202-120 chr2 78933728 78933881 + 2 NA Intergenic Intergenic -91898 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 278-294 chr3 164725533 164725705 + 2 NA intron (NR_126405, intron 2 of 3) L1M4|LINE|L1 105861 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 402-180 chr2 213838792 213839067 + 2 NA intron (NR_047660, intron 9 of 14) LTR54|LTR|ERV1 80862 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 244-148 chr2 4010687 4010861 + 2 NA Intergenic L1MB8|LINE|L1 36613 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 215-191 chr3 66976378 66976511 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -21863 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 217-344 chr7 18745107 18745302 + 2 NA intron (NM_058176, intron 12 of 22) intron (NM_058176, intron 12 of 22) 235934 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 277-273 chr3 137543379 137543543 + 2 NA Intergenic Intergenic -220854 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 291-75 chr11 80246289 80246477 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 516420 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 271-55 chr10 83663768 83664030 + 2 NA Intergenic Intergenic 13190 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 160-109 chr7 86618197 86618296 + 2 NA Intergenic L1MB1|LINE|L1 -25663 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 373-443 chrX 82486160 82486364 + 2 NA Intergenic L1MB3|LINE|L1 -1022028 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 385-108 chr15 24605916 24606287 + 2 NA Intergenic ERVL47-int|LTR|ERVL 47944 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 254-361 chr6 165734893 165735093 + 2 NA Intergenic (TAGG)n|Simple_repeat|Simple_repeat -72713 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 151-38 chr2 138031896 138031980 + 2 NA Intergenic Intergenic 67465 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 424-135 chr2 114001188 114001531 + 2 NA intron (NR_148508, intron 1 of 1) intron (NR_148508, intron 1 of 1) -21375 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 251-421 chr9 99555467 99555679 + 2 NA Intergenic Intergenic -180316 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 486-90 chr14 82013659 82013998 + 2 NA Intergenic L1PA15-16|LINE|L1 -270690 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 305-44 chr1 227408112 227408270 + 2 NA Intergenic HAL1|LINE|L1 -89699 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 340-26 chr1 173298876 173299211 + 2 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -91712 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 348-274 chr21 22740840 22741046 + 2 NA Intergenic Intergenic -338341 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 771-66 chr5 5254138 5254793 + 2 NA intron (NM_139056, intron 17 of 22) intron (NM_139056, intron 17 of 22) 114135 NM_139056 170690 Hs.661915 NM_139056 ENSG00000145536 ADAMTS16 ADAMTS16s ADAM metallopeptidase with thrombospondin type 1 motif 16 protein-coding 355-282 chr20 31443589 31443886 + 2 NA intron (NM_153324, intron 1 of 1) intron (NM_153324, intron 1 of 1) 3105 NR_126450 245936 Hs.122509 NM_153324 ENSG00000180424 DEFB123 DEFB-23|DEFB23|ESC42-RELD defensin beta 123 protein-coding 248-180 chr2 58821792 58821971 + 2 NA intron (NR_033873, intron 2 of 13) L1MA3|LINE|L1 301128 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 485-228 chr5 100193163 100193630 + 2 NA Intergenic L1PA10|LINE|L1 194858 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 460-185 chr22 34847740 34848108 + 2 NA intron (NR_138042, intron 3 of 4) L1MD|LINE|L1 149992 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 423-243 chr6 101958671 101959090 + 2 NA intron (NM_001166247, intron 13 of 16) L1PB4|LINE|L1 559895 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 527-60 chr12 31864731 31865127 + 2 NA Intergenic L1M5|LINE|L1 22274 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 206-106 chr2 11486080 11486234 + 2 NA Intergenic Intergenic -19980 NM_001278277 1876 Hs.603093 NM_198256 ENSG00000169016 E2F6 E2F-6 E2F transcription factor 6 protein-coding 357-345 chr5 60577258 60577568 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -81127 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 311-107 chr12 98043752 98044000 + 2 NA Intergenic Intergenic -48428 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 234-260 chr3 180123851 180124008 + 2 NA Intergenic L1MEc|LINE|L1 -86992 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 272-285 chr3 177744176 177744379 + 2 NA intron (NR_047568, intron 3 of 3) L2a|LINE|L2 -72588 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 382-157 chr18 76776712 76777062 + 2 NA Intergenic MER4A1|LTR|ERV1 45408 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 219-263 chr4 125403534 125403688 + 2 NA intron (NM_001291303, intron 2 of 16) intron (NM_001291303, intron 2 of 16) 87199 NM_001291303 79633 Hs.563205 NM_024582 ENSG00000196159 FAT4 CDHF14|CDHR11|FAT-J|FATJ|HKLLS2|NBLA00548|VMLDS2 FAT atypical cadherin 4 protein-coding 701-3 chr1 222616586 222617067 + 2 NA Intergenic Intergenic -1271 NM_198551 375056 Hs.118474 NM_198551 ENSG00000154305 MIA3 ARNT|D320|TANGO|TANGO1|UNQ6077 MIA SH3 domain ER export factor 3 protein-coding 306-31 chr1 168672603 168672821 + 2 NA Intergenic MER81|DNA|hAT-Blackjack 56494 NM_001937 1805 Hs.80552 NM_001937 ENSG00000143196 DPT TRAMP dermatopontin protein-coding 415-12 chr1 106163501 106163842 + 2 NA Intergenic Intergenic -135418 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 343-11 chr1 74331827 74332118 + 2 NA intron (NM_015978, intron 6 of 24) intron (NM_015978, intron 6 of 24) 96585 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 146-46 chr2 180634956 180635051 + 2 NA Intergenic L1ME3Cz|LINE|L1 -57101 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 383-143 chr16 55712541 55712835 + 2 NA Intergenic L2c|LINE|L2 -12237 NR_033740 390732 Hs.554599 NR_033740 CES1P2 - carboxylesterase 1 pseudogene 2 pseudo 207-120 chr19 39775003 39775177 + 2 NA Intergenic Intergenic -1504 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 403-62 chr11 115121446 115121749 + 2 NA Intergenic L2c|LINE|L2 -211980 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 382-138 chr16 86480180 86480380 + 2 NA intron (NR_033925, intron 1 of 3) intron (NR_033925, intron 1 of 3) 28580 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 347-133 chr14 60085055 60085325 + 2 NA Intergenic Intergenic -6721 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 311-402 chr5 37981010 37981263 + 2 NA Intergenic L2c|LINE|L2 32645 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 324-229 chr18 64669144 64669402 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -409218 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 483-20 chr10 5105331 5105644 + 2 NA intron (NM_003739, intron 7 of 8) intron (NM_003739, intron 7 of 8) 11073 NM_001253909 8644 Hs.78183 NM_003739 ENSG00000196139 AKR1C3 DD3|DDX|HA1753|HAKRB|HAKRe|HSD17B5|PGFS|hluPGFS aldo-keto reductase family 1 member C3 protein-coding 245-196 chr2 104173397 104173578 + 2 NA Intergenic MLT2D|LTR|ERVL 234845 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 353-434 chr6 8266848 8267183 + 2 NA Intergenic L2c|LINE|L2 -164420 NR_037618 100526837 Hs.719272 NR_037618 EEF1E1-BLOC1S5 EEF1E1-MUTED EEF1E1-BLOC1S5 readthrough (NMD candidate) ncRNA 283-123 chr13 74232131 74232374 + 2 NA intron (NR_144451, intron 1 of 1) intron (NR_144451, intron 1 of 1) 808 NR_144451 100507612 Hs.447508 NR_144451 ENSG00000235532 LINC00402 - long intergenic non-protein coding RNA 402 ncRNA 761-15 chr14 45785441 45786019 + 2 NA Intergenic MER61E|LTR|ERV1 -70128 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 495-184 chr4 125730432 125730823 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 223368 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 262-49 chr10 56690377 56690632 + 2 NA Intergenic L1MA9|LINE|L1 -329231 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 200-5 chr1 69686357 69686488 + 2 NA intron (NM_001370785, intron 2 of 26) L1MDa|LINE|L1 117081 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 481-318 chrUn_KI270442v1 358121 358437 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 173-132 chr7 115708143 115708297 + 2 NA Intergenic Intergenic -126779 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 314-244 chr18 61053151 61053369 + 2 NA Intergenic L1PREC2|LINE|L1 -280170 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 127-44 chr2 19400329 19400398 + 2 NA Intergenic L1MC|LINE|L1 -41740 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 335-127 chr12 46560432 46560644 + 2 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 176431 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 144-103 chr8 135392729 135392837 + 2 NA Intergenic Intergenic -64673 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 312-365 chr4 37700997 37701239 + 2 NA Intergenic Intergenic -14742 NM_001085400 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 208-223 chr5 167870437 167870578 + 2 NA intron (NM_001080428, intron 1 of 24) MIRb|SINE|MIR 115578 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 262 chr1 8124831 8125051 + 2 NA Intergenic L1MC4|LINE|L1 -83731 NR_125998 102724539 Hs.516816 NR_125998 ENSG00000227634 LINC01714 - long intergenic non-protein coding RNA 1714 ncRNA 396-353 chr8 95826307 95826678 + 2 NA Intergenic L1MB5|LINE|L1 121856 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 332-145 chr13 80650859 80651141 + 2 NA Intergenic Intergenic -309874 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 319-242 chr2 71317284 71317464 + 2 NA Intergenic L1PB1|LINE|L1 -14381 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 405-152 chr2 122289000 122289384 + 2 NA Intergenic L1MEi|LINE|L1 533541 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 309-255 chr2 99157457 99157646 + 2 NA intron (NM_145197, intron 3 of 3) L2c|LINE|L2 2477 NM_001204830 51601 Hs.719172 NM_015929 ENSG00000144182 LIPT1 LIPT1D lipoyltransferase 1 protein-coding 308-120 chr12 125878656 125878893 + 2 NA Intergenic LTR75|LTR|ERVL 104600 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 113-12 chr12 64660539 64660633 + 2 NA intron (NR_040718, intron 1 of 3) intron (NR_040718, intron 1 of 3) -37981 NR_037515 100500856 NR_037515 ENSG00000266016 MIR548Z - microRNA 548z ncRNA 585-157 chr8 27574707 27575196 + 2 NA Intergenic L1PA4|LINE|L1 35800 NR_106902 102465508 NR_106902 ENSG00000284280 MIR6843 hsa-mir-6843 microRNA 6843 ncRNA 294-188 chr19 41409432 41409585 + 2 NA intron (NM_001164783, intron 1 of 8) intron (NM_001164783, intron 1 of 8) 11690 NM_000709 593 Hs.433307 NM_000709 ENSG00000248098 BCKDHA BCKDE1A|MSU|MSUD1|OVD1A branched chain keto acid dehydrogenase E1 subunit alpha protein-coding 300-100 chr13 65020350 65020595 + 2 NA Intergenic L1PA15|LINE|L1 -845575 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 372-516 chr9 85278330 85278659 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 463535 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 239-171 chr2 53288835 53289001 + 2 NA Intergenic Intergenic -478865 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 261-151 chr17 79111764 79112019 + 2 NA intron (NM_001082575, intron 5 of 14) intron (NM_001082575, intron 5 of 14) 36954 NM_001042573 64772 Hs.29288 NM_022759 ENSG00000167280 ENGASE - endo-beta-N-acetylglucosaminidase protein-coding 415-81 chr15 70991447 70991736 + 2 NA intron (NM_017691, intron 11 of 15) MER2B|DNA|TcMar-Tigger 99148 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 257-446 chr9 138110791 138110950 + 2 NA intron (NM_001243812, intron 38 of 45) L1ME1|LINE|L1 -39243 NR_027156 643224 Hs.551805 NR_027156 TUBBP5 - tubulin beta pseudogene 5 pseudo 309-251 chr2 74757333 74757517 + 2 NA Intergenic Intergenic -75230 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 626-116 chr5 67192440 67192808 + 2 NA intron (NM_005582, intron 1 of 2) MSTA|LTR|ERVL-MaLR 4175 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 506-299 chr8 139564859 139565274 + 2 NA Intergenic MIR3|SINE|MIR 138057 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 337-291 chr2 200685105 200685405 + 2 NA Intergenic L3|LINE|CR1 -10468 NR_135011 107161151 Hs.148269 NR_135011 AOX3P-AOX2P AOX3/AOX3L1 AOX3P-AOX2P readthrough, transcribed pseudogene pseudo 443-81 chr13 59424686 59424935 + 2 NA Intergenic Intergenic -587908 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 505-154 chr2 102545688 102546042 + 2 NA Intergenic L1M5|LINE|L1 72639 NM_001011552 389015 Hs.447686 NM_001011552 ENSG00000180251 SLC9A4 NHE4 solute carrier family 9 member A4 protein-coding 256-316 chr5 33013657 33013860 + 2 NA Intergenic L1M3c|LINE|L1 66315 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 356-143 chr14 46777588 46777896 + 2 NA Intergenic Intergenic -125961 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 288-91 chr13 29137999 29138230 + 2 NA intron (NM_001033602, intron 3 of 13) L1MB3|LINE|L1 113657 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 356-80 chr11 43027975 43028221 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 241271 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 263-144 chr16 77391689 77391909 + 2 NA intron (NM_199355, intron 3 of 22) intron (NM_199355, intron 3 of 22) 43235 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 451-242 chr8 125566310 125566586 + 2 NA Intergenic Intergenic 134239 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 249-124 chr14 85788112 85788284 + 2 NA Intergenic Intergenic -146480 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 386-3 chr1 23880826 23881110 + 2 NA intron (NM_001841, intron 1 of 1) intron (NM_001841, intron 1 of 1) -12599 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 301-327 chr4 96544182 96544355 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 233565 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 372-59 chr10 111269882 111270172 + 2 NA Intergenic Intergenic 155736 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 350-274 chr20 42824377 42824719 + 2 NA intron (NM_133170, intron 2 of 31) L1ME4a|LINE|L1 139065 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 253-10 chr1 86412059 86412224 + 2 NA Intergenic HERVL18-int|LTR|ERVL -12030 NM_006536 9635 Hs.241551 NM_006536 ENSG00000137975 CLCA2 CACC|CACC3|CLCRG2|CaCC-3 chloride channel accessory 2 protein-coding 530-203 chr5 98183785 98184181 + 2 NA Intergenic L1PB2|LINE|L1 -22744 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 588-53 chr17 53393146 53393575 + 2 NA Intergenic MER68|LTR|ERVL 407855 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 439-285 chr8 88392645 88392956 + 2 NA Intergenic Intergenic -65317 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 242-152 chr19 17011071 17011257 + 2 NA intron (NM_015692, intron 5 of 41) AluSx1|SINE|Alu 15646 NM_015692 27151 Hs.631644 NM_015692 ENSG00000160111 CPAMD8 ASGD8|K-CAP|VIP C3 and PZP like alpha-2-macroglobulin domain containing 8 protein-coding 257-343 chr6 16171957 16172176 + 2 NA Intergenic Intergenic 30510 NR_039782 100616269 NR_039782 ENSG00000263712 MIR4639 - microRNA 4639 ncRNA 311-267 chr2 115779754 115780012 + 2 NA intron (NM_001321912, intron 16 of 25) intron (NM_001321912, intron 16 of 25) 436068 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 263-293 chr4 76578023 76578250 + 2 NA intron (NM_020859, intron 2 of 10) intron (NM_020859, intron 2 of 10) 2585 NR_039655 100616254 NR_039655 ENSG00000283682 MIR548AH - microRNA 548ah ncRNA 608-122 chr5 59859016 59859342 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 34547 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 553-131 chr2 152803427 152803858 + 2 NA Intergenic MER57A-int|LTR|ERV1 85005 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 129-23 chr14 89835374 89835454 + 2 NA intron (NM_001284269, intron 5 of 5) Tigger4b|DNA|TcMar-Tigger 119122 NM_001284268 90141 Hs.123232 NM_145231 ENSG00000140025 EFCAB11 C14orf143 EF-hand calcium binding domain 11 protein-coding 278-55 chr11 83919484 83919666 + 2 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -237150 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 241-181 chr2 48819330 48819500 + 2 NA Intergenic Intergenic -63691 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 396-249 chr4 39258176 39258565 + 2 NA intron (NM_025132, intron 28 of 36) AluSq4|SINE|Alu 75841 NM_001317924 57728 Hs.438482 NM_025132 ENSG00000157796 WDR19 ATD5|CED4|DYF-2|IFT144|NPHP13|ORF26|Oseg6|PWDMP|SRTD5 WD repeat domain 19 protein-coding 243-371 chr5 145147564 145147738 + 2 NA Intergenic L1ME1|LINE|L1 687691 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 243-215 chr2 88370984 88371154 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 81624 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 299-412 chr7 27965096 27965352 + 2 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -215233 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 262-298 chr3 191243762 191243926 + 2 NA intron (NM_198184, intron 3 of 4) intron (NM_198184, intron 3 of 4) -9239 NR_133663 106480738 NR_133663 ENSG00000233308 OSTN-AS1 - OSTN antisense RNA 1 ncRNA 324-530 chr8 86017422 86017737 + 2 NA Intergenic Intergenic 52089 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 292-285 chr3 53652611 53652872 + 2 NA intron (NM_001128840, intron 4 of 47) MER58A|DNA|hAT-Charlie 158130 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 217-193 chr2 189475183 189475394 + 2 NA exon (NM_032168, exon 21 of 21) exon (NM_032168, exon 21 of 21) 33814 NM_032168 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 679-93 chr6 49202728 49203253 + 2 NA Intergenic L1MD2|LINE|L1 260263 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 341-198 chr17 59561227 59561420 + 2 NA Intergenic Intergenic -4287 NM_024612 79665 Hs.29403 NM_024612 ENSG00000108406 DHX40 ARG147|DDX40|PAD DEAH-box helicase 40 protein-coding 418-216 chr5 60873126 60873430 + 2 NA TTS (NM_000082) TTS (NM_000082) -29004 NM_001104558 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 995-8 chr18 65176984 65177669 + 2 NA Intergenic Intergenic -572926 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 389-76 chr12 30548701 30548987 + 2 NA Intergenic Intergenic 128400 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 298-490 chr9 27424061 27424230 + 2 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -100169 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 357-400 chr6 163564586 163564792 + 2 NA exon (NM_206854, exon 7 of 7) exon (NM_206854, exon 7 of 7) 106795 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 281-316 chr4 64476504 64476759 + 2 NA Intergenic Intergenic -67171 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 344-514 chr9 27111191 27111405 + 2 NA intron (NM_001290078, intron 1 of 20) intron (NM_001290078, intron 1 of 20) 2157 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 298-161 chr17 16594161 16594441 + 2 NA Intergenic L1MA5A|LINE|L1 -25089 NM_001346168 57336 Hs.99724 NM_020653 ENSG00000141040 ZNF287 ZKSCAN13|ZSCAN45 zinc finger protein 287 protein-coding 263-380 chr7 7444208 7444395 + 2 NA intron (NM_001037763, intron 19 of 34) intron (NM_001037763, intron 19 of 34) 91572 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 419-289 chr8 67166433 67166756 + 2 NA intron (NM_001363133, intron 21 of 27) intron (NM_001363133, intron 21 of 27) 82746 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 238-297 chr5 64242234 64242438 + 2 NA intron (NM_001113561, intron 5 of 7) L1M3e|LINE|L1 76493 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 353-369 chr4 44259141 44259426 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 189526 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 378-302 chr4 41713697 41713992 + 2 NA Intergenic Intergenic 35126 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 539-2 chr1 29737332 29737672 + 2 NA Intergenic Intergenic 300110 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 463-111 chr17 29959180 29959538 + 2 NA intron (NR_026738, intron 3 of 15) L1M1|LINE|L1 17725 NM_198529 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 299-139 chr14 66006471 66006693 + 2 NA Intergenic L1ME2|LINE|L1 -479789 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 161-91 chr5 155526711 155526819 + 2 NA Intergenic Intergenic 513010 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 242-115 chr15 63734196 63734368 + 2 NA intron (NM_003922, intron 13 of 77) intron (NM_003922, intron 13 of 77) 99666 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 538-251 chr9 24487871 24488352 + 2 NA Intergenic Intergenic 57565 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 271-361 chr5 148599204 148599348 + 2 NA intron (NM_001040172, intron 1 of 5) L1ME3|LINE|L1 37785 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 255-247 chr22 48928067 48928267 + 2 NA Intergenic L1MD|LINE|L1 61397 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 221-241 chr5 60916159 60916300 + 2 NA intron (NM_001007234, intron 4 of 5) L1MEg1|LINE|L1 28841 NM_001007234 1161 Hs.435237 NM_000082 ENSG00000049167 ERCC8 CKN1|CSA|UVSS2 ERCC excision repair 8, CSA ubiquitin ligase complex subunit protein-coding 552-133 chr3 25978771 25979193 + 2 NA Intergenic Intergenic -105287 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 139-74 chr5 117568055 117568173 + 2 NA intron (NR_046089, intron 5 of 5) L1MEg|LINE|L1 152602 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 261-412 chr9 80290600 80290766 + 2 NA Intergenic Intergenic 315660 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 465-62 chr12 41893763 41894116 + 2 NA Intergenic Intergenic 129750 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 309-522 chr7 95730486 95730779 + 2 NA Intergenic MamGyp-int|LTR|Gypsy -41874 NM_004411 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 237-234 chr3 36698052 36698255 + 2 NA Intergenic Intergenic 41708 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 381-17 chr1 159587916 159588180 + 2 NA intron (NM_001639, intron 1 of 1) intron (NM_001639, intron 1 of 1) 222 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 280-160 chr17 42849711 42849859 + 2 NA intron (NM_009590, intron 3 of 3) intron (NM_009590, intron 3 of 3) -1399 NM_001277731 8639 Hs.198241 NM_003734 ENSG00000131471 AOC3 HPAO|SSAO|VAP-1|VAP1 amine oxidase copper containing 3 protein-coding 143-70 chr5 125215144 125215250 + 2 NA intron (NR_109882, intron 4 of 5) L1M5|LINE|L1 178366 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 276-395 chr6 36299598 36299866 + 2 NA intron (NM_173676, intron 5 of 7) L1MC3|LINE|L1 29272 NM_001145717 285848 Hs.407002 NM_173676 ENSG00000180316 PNPLA1 ARCI10|dJ50J22.1 patatin like phospholipase domain containing 1 protein-coding 320-499 chr6 157950168 157950336 + 2 NA Intergenic L1MA2|LINE|L1 -31611 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 229-324 chr5 155576389 155576539 + 2 NA Intergenic L2c|LINE|L2 562709 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 380-110 chr13 102011952 102012283 + 2 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) 33887 NR_039854 100616239 NR_039854 ENSG00000264482 MIR4705 - microRNA 4705 ncRNA 378-438 chr8 95548589 95548898 + 2 NA intron (NR_038207, intron 2 of 2) intron (NR_038207, intron 2 of 2) -279542 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 210-143 chr2 150572697 150572846 + 2 NA promoter-TSS (NR_110241) promoter-TSS (NR_110241) -550 NR_110241 101929260 Hs.732324 NR_110241 ENSG00000236049 LINC01920 - long intergenic non-protein coding RNA 1920 ncRNA 208-262 chr8 86241650 86241821 + 2 NA Intergenic L1MC2|LINE|L1 -11354 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 386-121 chr16 31926979 31927248 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 53306 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 424-173 chr3 68739380 68739768 + 2 NA intron (NM_001005527, intron 4 of 5) L1PB4|LINE|L1 192973 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 289-470 chr8 120888863 120889057 + 2 NA Intergenic Intergenic -76914 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 287-177 chr18 67779006 67779167 + 2 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) 35736 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 256-436 chr8 131201125 131201337 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -160322 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 319-539 chr8 107144148 107144384 + 2 NA Intergenic Intergenic 192249 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 361-390 chr6 63488355 63488550 + 2 NA Intergenic Intergenic -83560 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 416-3 chr1 18626956 18627273 + 2 NA Intergenic Intergenic -3732 NM_001135254 5081 Hs.113253 NM_002584 ENSG00000009709 PAX7 HUP1|PAX7B|RMS2 paired box 7 protein-coding 500-281 chr8 5210587 5210926 + 2 NA Intergenic L1ME3|LINE|L1 -215842 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 259-92 chr12 129195482 129195709 + 2 NA intron (NM_133448, intron 5 of 8) LTR106_Mam|LTR|LTR -13006 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 207-287 chr8 67136643 67136804 + 2 NA intron (NM_001363133, intron 14 of 27) intron (NM_001363133, intron 14 of 27) 52875 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 178-146 chr8 91680467 91680593 + 2 NA Intergenic Intergenic 337150 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 359-312 chr3 27050579 27050804 + 2 NA Intergenic Intergenic 165832 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 276-16 chr1 108479311 108479479 + 2 NA Intergenic L1M3|LINE|L1 29113 NM_001143987 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 272-280 chr3 137779676 137779879 + 2 NA intron (NR_109987, intron 4 of 4) intron (NR_109987, intron 4 of 4) 7866 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 307-260 chr2 196573960 196574171 + 2 NA intron (NM_001348768, intron 1 of 28) L1MA9|LINE|L1 18918 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 185-131 chr3 3388217 3388367 + 2 NA Intergenic L1ME4b|LINE|L1 -208575 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 333-310 chr20 39536569 39536798 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -311935 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 575-53 chr14 66820354 66820791 + 2 NA intron (NM_001024218, intron 3 of 21) intron (NM_001024218, intron 3 of 21) 313165 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 300-199 chr2 95070785 95070969 + 2 NA Intergenic (ATATATA)n|Simple_repeat|Simple_repeat 45169 NM_002371 4118 Hs.80395 NM_002371 ENSG00000172005 MAL MVP17|VIP17 mal, T cell differentiation protein protein-coding 377-244 chr20 15960398 15960654 + 2 NA intron (NM_001351663, intron 12 of 17) LTR16C|LTR|ERVL 25356 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 358-521 chr9 118110231 118110443 + 2 NA Intergenic Intergenic 405934 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 468-287 chr6 129828424 129828802 + 2 NA Intergenic Intergenic 32702 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 175-110 chr4 30452924 30453075 + 2 NA Intergenic Intergenic -267370 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 368-176 chr16 52345967 52346288 + 2 NA Intergenic L1M4|LINE|L1 87563 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 390-138 chr16 85920836 85921198 + 2 NA intron (NM_001363907, intron 8 of 8) intron (NM_001363907, intron 8 of 8) 2670 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 443-118 chr16 83745887 83746113 + 2 NA intron (NM_001220489, intron 9 of 12) MIR|SINE|MIR 57976 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 310-378 chr4 106776146 106776303 + 2 NA Intergenic Intergenic 260089 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 224-261 chr5 128429664 128429817 + 2 NA intron (NM_001999, intron 7 of 64) intron (NM_001999, intron 7 of 64) 108505 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 332-89 chr11 48596725 48596985 + 2 NA Intergenic L1PB1|LINE|L1 108062 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 228-370 chr9 36640811 36640990 + 2 NA intron (NM_001256691, intron 8 of 15) intron (NM_001256691, intron 8 of 15) 68005 NM_014791 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 530-233 chr7 52237140 52237523 + 2 NA Intergenic Intergenic -798302 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 340-173 chr15 79689858 79690073 + 2 NA Intergenic L1M4|LINE|L1 207032 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 469-31 chr10 55455694 55455998 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -143196 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 374-103 chr14 72226802 72227070 + 2 NA intron (NM_001370288, intron 2 of 16) AluSz6|SINE|Alu -289884 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 419-237 chr5 143724430 143724718 + 2 NA Intergenic L1PA16|LINE|L1 44714 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 328-309 chr20 11703918 11704199 + 2 NA Intergenic L2b|LINE|L2 166657 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 115-32 chr4 79883132 79883211 + 2 NA Intergenic Intergenic 55700 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 248-347 chr6 50282729 50282877 + 2 NA Intergenic Intergenic -232874 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 1101-17 chr6 163850938 163851745 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -179857 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 464-19 chr10 52276786 52277183 + 2 NA intron (NM_001098512, intron 12 of 17) intron (NM_001098512, intron 12 of 17) 37144 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 382-160 chr18 79924817 79925098 + 2 NA intron (NM_001146345, intron 3 of 4) intron (NM_001146345, intron 3 of 4) 26696 NM_025078 80148 Hs.288284 NM_025078 ENSG00000122490 SLC66A2 PQLC1 solute carrier family 66 member 2 protein-coding 446-13 chr1 87841130 87841510 + 2 NA Intergenic L1ME4a|LINE|L1 -469665 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 313-256 chr2 67120276 67120519 + 2 NA intron (NR_110564, intron 1 of 4) L1ME1|LINE|L1 33951 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 620-138 chr8 21321185 21321703 + 2 NA Intergenic Intergenic 23205 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 162-122 chr7 70999436 70999534 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -132659 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 256-193 chr2 41887131 41887295 + 2 NA intron (NR_033996, intron 1 of 2) intron (NR_033996, intron 1 of 2) 9658 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 244-137 chr18 78025372 78025544 + 2 NA Intergenic L1MA7|LINE|L1 -31731 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 572-118 chr4 17735536 17736014 + 2 NA intron (NM_015688, intron 1 of 17) intron (NM_015688, intron 1 of 17) 45846 NM_015688 27146 Hs.744951 NM_015688 ENSG00000047662 FAM184B - family with sequence similarity 184 member B protein-coding 168-77 chr3 151502085 151502208 + 2 NA Intergenic Intergenic -43437 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 374-420 chr9 114101190 114101449 + 2 NA Intergenic AluSq2|SINE|Alu -2262 NM_138424 113220 Hs.28149 NM_138424 ENSG00000136883 KIF12 - kinesin family member 12 protein-coding 508-167 chr4 55061680 55062043 + 2 NA Intergenic Intergenic 63734 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 576-88 chr2 126699457 126699848 + 2 NA Intergenic L2c|LINE|L2 43494 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 228-239 chr4 45597273 45597395 + 2 NA Intergenic Intergenic 526720 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 594-64 chr2 22685113 22685535 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 148845 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 722-19 chr11 90713433 90714052 + 2 NA intron (NR_104190, intron 3 of 6) L1MA4|LINE|L1 155460 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 195-19 chr10 39317372 39317512 + 2 NA Intergenic ALR/Alpha|Satellite|centr 620846 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 326-427 chr5 124103012 124103296 + 2 NA intron (NR_125774, intron 4 of 5) MIRb|SINE|MIR 335366 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 612-118 chr5 127714583 127715019 + 2 NA intron (NM_001317938, intron 2 of 6) L1MA6|LINE|L1 11412 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 352-138 chr14 43686565 43686742 + 2 NA Intergenic LTR37B|LTR|ERV1 820630 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 459-184 chr3 43132898 43133342 + 2 NA Intergenic Intergenic -27041 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 309-552 chr8 107000432 107000643 + 2 NA Intergenic MER34C_|LTR|ERV1 -230293 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 562-86 chr18 52137753 52138150 + 2 NA Intergenic L1M4b|LINE|L1 -202246 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 310-328 chr3 68707208 68707455 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 206694 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 290-308 chr4 46059787 46060053 + 2 NA intron (NM_173536, intron 5 of 8) L1ME3B|LINE|L1 64134 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 134-34 chr15 59951795 59951880 + 2 NA Intergenic Intergenic -52474 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 577-84 chr19 51971110 51971470 + 2 NA intron (NM_021632, intron 2 of 4) intron (NM_021632, intron 2 of 4) 15550 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 383-302 chr5 13990611 13990929 + 2 NA Intergenic AluSp|SINE|Alu -46290 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 218-29 chr10 81201266 81201438 + 2 NA Intergenic Intergenic 551555 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 315-261 chr2 148417001 148417289 + 2 NA intron (NM_018328, intron 5 of 14) AluJb|SINE|Alu -227606 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 381-58 chr10 83795437 83795759 + 2 NA Intergenic L1PA13|LINE|L1 -118509 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 454-11 chr1 178215528 178215859 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 121589 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 304-571 chrX 87222189 87222372 + 2 NA Intergenic L1ME1|LINE|L1 -295522 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 253-425 chr9 21863005 21863182 + 2 NA 3' UTR (NM_002451, exon 8 of 8) 3' UTR (NM_002451, exon 8 of 8) 60457 NM_002451 4507 Hs.193268 NM_002451 ENSG00000099810 MTAP BDMF|DMSFH|DMSMFH|HEL-249|LGMBF|MSAP|c86fus methylthioadenosine phosphorylase protein-coding 191-20 chr1 213784986 213785106 + 2 NA Intergenic Intergenic -139703 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 331-251 chr2 27875167 27875396 + 2 NA intron (NM_001287580, intron 1 of 8) AluJr|SINE|Alu -13428 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 339-4 chr1 34051019 34051352 + 2 NA intron (NM_052896, intron 2 of 69) ERVL-B4-int|LTR|ERVL 114089 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 329-91 chr11 24111359 24111549 + 2 NA Intergenic LTR16A2|LTR|ERVL -385599 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 353-152 chr14 88170617 88170881 + 2 NA Intergenic L1PB4|LINE|L1 100162 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 316-235 chr19 33339512 33339762 + 2 NA Intergenic LTR16C|LTR|ERVL -34072 NM_001806 1054 Hs.429666 NM_001806 ENSG00000153879 CEBPG GPE1BP|IG/EBP-1 CCAAT enhancer binding protein gamma protein-coding 505-323 chr9 26041955 26042455 + 2 NA Intergenic L1MC5|LINE|L1 -24470 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 479-103 chr2 54788772 54789091 + 2 NA intron (NM_001039753, intron 1 of 40) intron (NM_001039753, intron 1 of 40) 63919 NM_001039753 400954 Hs.656692 NM_001039753 ENSG00000214595 EML6 - EMAP like 6 protein-coding 401-330 chr8 128416517 128416815 + 2 NA intron (NR_121672, intron 5 of 7) L1M7|LINE|L1 148013 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 297-260 chr20 14649265 14649471 + 2 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) 94984 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 331-519 chr8 46530830 46531060 + 2 NA Intergenic ALR/Alpha|Satellite|centr 86698 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 306-43 chr1 210804810 210805105 + 2 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 328417 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 143-23 chr13 20905093 20905204 + 2 NA Intergenic Intergenic -2374 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 517-286 chr9 31264087 31264525 + 2 NA Intergenic Intergenic 117184 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 538-209 chr6 53143236 53143638 + 2 NA intron (NM_003643, intron 2 of 5) intron (NM_003643, intron 2 of 5) 5404 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 187-13 chr1 90452114 90452235 + 2 NA Intergenic L1ME2|LINE|L1 -205576 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 326-5 chr1 30128545 30128734 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -91027 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 380-146 chr17 5873556 5873746 + 2 NA intron (NR_040000, intron 2 of 3) intron (NR_040000, intron 2 of 3) 101417 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 733-71 chr6 120474952 120475492 + 2 NA Intergenic L1MB1|LINE|L1 460043 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 220-160 chr2 57013839 57014018 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -828158 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 332-191 chr16 83706187 83706399 + 2 NA intron (NM_001220489, intron 9 of 12) MLT1G3|LTR|ERVL-MaLR 97683 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 189-180 chr6 135132913 135133069 + 2 NA Intergenic Intergenic -48317 NM_001130172 4602 Hs.606320 NM_005375 ENSG00000118513 MYB Cmyb|c-myb|c-myb_CDS|efg MYB proto-oncogene, transcription factor protein-coding 1074-5 chr12 125588234 125589036 + 2 NA intron (NM_052907, intron 5 of 8) intron (NM_052907, intron 5 of 8) -33817 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 329-159 chr14 52275221 52275491 + 2 NA 3' UTR (NM_000953, exon 2 of 2) 3' UTR (NM_000953, exon 2 of 2) 7658 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 189-6 chr1 158345602 158345729 + 2 NA Intergenic L1PA13|LINE|L1 -8031 NM_001185114 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 289-123 chr12 123765767 123765956 + 2 NA intron (NM_207437, intron 1 of 77) (ATCT)n|Simple_repeat|Simple_repeat 3366 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 265-205 chr2 205591241 205591473 + 2 NA intron (NM_205863, intron 21 of 21) intron (NM_205863, intron 21 of 21) -91143 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 257-226 chr2 213546894 213547076 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -211082 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 478-278 chr7 112749271 112749732 + 2 NA Intergenic Intergenic 40892 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 556-125 chr20 13993891 13994257 + 2 NA intron (NM_001363752, intron 1 of 16) AluSq2|SINE|Alu 1259 NR_073207 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 426-63 chr12 60757391 60757775 + 2 NA Intergenic Intergenic 1068213 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 239-248 chr3 98366235 98366403 + 2 NA Intergenic MER4-int|LTR|ERV1 12465 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 306-281 chr20 39600317 39600504 + 2 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -375662 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 592-148 chr5 148216393 148216836 + 2 NA Intergenic Intergenic 13572 NM_205841 404203 Hs.334274 NM_205841 ENSG00000178172 SPINK6 BUSI2|UNQ844 serine peptidase inhibitor, Kazal type 6 protein-coding 222-52 chr10 115687858 115688065 + 2 NA intron (NM_207303, intron 26 of 28) L1MA4A|LINE|L1 506828 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 273-140 chr14 79308074 79308244 + 2 NA intron (NM_001105250, intron 1 of 6) MLT1B|LTR|ERVL-MaLR 28779 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 482-136 chr2 187196937 187197292 + 2 NA Intergenic Intergenic 251138 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 507-258 chr8 122827739 122828156 + 2 NA intron (NM_001362797, intron 1 of 4) AluJr|SINE|Alu 46292 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 359-359 chr4 54633895 54634178 + 2 NA Intergenic Intergenic -23892 NM_001093772 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 337-341 chr3 26284837 26285071 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -337852 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 237-241 chr3 75098236 75098407 + 2 NA Intergenic L1MB1|LINE|L1 -116155 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 609-115 chr6 38671855 38672308 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 31064 NM_006708 2739 Hs.268849 NM_006708 ENSG00000124767 GLO1 GLOD1|GLYI|HEL-S-74 glyoxalase I protein-coding 285-53 chr11 14577223 14577444 + 2 NA intron (NM_148976, intron 2 of 10) MIR|SINE|MIR -56888 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 585-110 chr4 75362478 75362957 + 2 NA TTS (NR_033964) TTS (NR_033964) 8641 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 487-261 chr7 3496788 3497091 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 195687 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 468-38 chr10 111481923 111482211 + 2 NA Intergenic Intergenic 367776 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 253-124 chr13 109487461 109487676 + 2 NA Intergenic HAL1M8|LINE|L1 86872 NR_126361 104326054 Hs.569298 NR_126361 ENSG00000229792 LINC00399 TCONS_00021596 long intergenic non-protein coding RNA 399 ncRNA 368-287 chr3 38779365 38779686 + 2 NA intron (NM_006514, intron 3 of 26) L1MC4|LINE|L1 14485 NM_001293306 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 582-38 chr14 62357651 62358100 + 2 NA Intergenic L1PA4|LINE|L1 -217902 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 384-230 chr3 82622020 82622330 + 2 NA Intergenic Intergenic 636033 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 469-70 chr12 115260208 115260627 + 2 NA Intergenic Intergenic -576242 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 301-330 chr4 106749053 106749227 + 2 NA Intergenic L1MC5|LINE|L1 287173 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 356-398 chr5 64550296 64550594 + 2 NA intron (NM_001029875, intron 2 of 5) MLT1A|LTR|ERVL-MaLR -25205 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 162-108 chr6 18955302 18955408 + 2 NA Intergenic L2a|LINE|L2 225125 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 337-379 chr4 12998418 12998661 + 2 NA Intergenic Intergenic 485801 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 323-325 chr3 42293064 42293315 + 2 NA Intergenic Kanga1|DNA|TcMar-Tc2 -27004 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 354-180 chr18 7397862 7398108 + 2 NA Intergenic L1MD1|LINE|L1 63021 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 201-160 chr3 117224307 117224477 + 2 NA Intergenic Intergenic 302961 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 262-408 chr7 111336573 111336766 + 2 NA intron (NM_032549, intron 3 of 5) L1MEi|LINE|L1 225622 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 351-149 chr15 96208999 96209339 + 2 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -81328 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 264-296 chr4 96140556 96140805 + 2 NA Intergenic Intergenic -170023 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 583-44 chr12 73319947 73320361 + 2 NA Intergenic Intergenic 160964 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 401-281 chr6 53315625 53315840 + 2 NA intron (NM_001242830, intron 1 of 6) intron (NM_001242830, intron 1 of 6) 21885 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 359-165 chr16 8200264 8200471 + 2 NA Intergenic MIRb|SINE|MIR 389471 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 246-35 chr10 28972355 28972531 + 2 NA Intergenic Intergenic 126035 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 318-558 chr8 131865248 131865425 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -38757 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 271-425 chr8 46315251 46315404 + 2 NA Intergenic ALR/Alpha|Satellite|centr 302316 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 231-51 chr11 13199062 13199232 + 2 NA Intergenic L1PA16|LINE|L1 -77505 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 233-361 chr7 112019541 112019734 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 186762 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 210-12 chr1 114982548 114982696 + 2 NA intron (NM_001282542, intron 28 of 30) L1M4|LINE|L1 -47202 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 404-5 chr1 44450476 44450728 + 2 NA intron (NM_001319957, intron 1 of 13) L1ME3G|LINE|L1 26601 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 317-444 chr7 20566429 20566642 + 2 NA Intergenic L1MB2|LINE|L1 -49132 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 287-127 chr14 20708557 20708830 + 2 NA Intergenic PABL_B-int|LTR|ERV1 19929 NM_194431 6038 Hs.283749 NM_002937 ENSG00000258818 RNASE4 RAB1|RNS4 ribonuclease A family member 4 protein-coding 726-76 chr8 67767317 67767842 + 2 NA Intergenic Intergenic -21219 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 391-287 chr5 63796006 63796290 + 2 NA Intergenic Intergenic 166144 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 287-133 chr14 49366439 49366701 + 2 NA Intergenic MER67C|LTR|ERV1 219810 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 320-442 chr5 51628068 51628339 + 2 NA Intergenic Zaphod3|DNA|hAT-Tip100 244755 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 321-536 chr7 110644623 110644913 + 2 NA Intergenic MER3|DNA|hAT-Charlie -446238 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 282-177 chr18 40541954 40542140 + 2 NA Intergenic MIR|SINE|MIR 475761 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 428-110 chr19 37848814 37849199 + 2 NA intron (NR_040015, intron 2 of 5) L1M4|LINE|L1 6190 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 387-53 chr11 19407055 19407411 + 2 NA intron (NM_001111018, intron 1 of 37) L2b|LINE|L2 56509 NM_001111018 89797 Hs.64341 NM_145117 ENSG00000166833 NAV2 HELAD1|POMFIL2|RAINB1|STEERIN2|UNC53H2 neuron navigator 2 protein-coding 235-269 chr4 137328052 137328194 + 2 NA Intergenic L1P4|LINE|L1 -115324 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 615-149 chrX 38962142 38962552 + 2 NA Intergenic L1PA17|LINE|L1 -158464 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 346-58 chr10 125589583 125589922 + 2 NA intron (NM_001318133, intron 3 of 3) L1M5|LINE|L1 15381 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 612 chr1 34298882 34299303 + 2 NA Intergenic L2|LINE|L2 122185 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 413-225 chr4 119976411 119976817 + 2 NA Intergenic Intergenic 37074 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 533-60 chr15 62177770 62178170 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -12685 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 260-412 chr7 82672697 82672866 + 2 NA Intergenic Intergenic -228825 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 551-99 chr2 177574468 177574871 + 2 NA Intergenic Intergenic -21873 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 215-170 chr20 21412091 21412247 + 2 NA Intergenic L1MA5|LINE|L1 -14643 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 359-208 chr19 37574198 37574401 + 2 NA intron (NR_038250, intron 2 of 2) intron (NR_038250, intron 2 of 2) 20447 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 132-93 chr8 120143888 120143979 + 2 NA intron (NM_021110, intron 1 of 47) intron (NM_021110, intron 1 of 47) 18831 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 590-11 chr1 179726202 179726621 + 2 NA Intergenic L2c|LINE|L2 -1365 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 402-36 chr10 84248791 84249123 + 2 NA exon (NM_002921, exon 3 of 7) exon (NM_002921, exon 3 of 7) 3904 NM_001012722 5995 Hs.1544 NM_002921 ENSG00000148604 RGR RP44 retinal G protein coupled receptor protein-coding 231-114 chr16 24465449 24465650 + 2 NA Intergenic AluJr|SINE|Alu -74017 NM_018703 5930 Hs.188553 NM_006910 ENSG00000122257 RBBP6 MY038|P2P-R|PACT|RBQ-1|SNAMA RB binding protein 6, ubiquitin ligase protein-coding 298-398 chr6 61476924 61477167 + 2 NA Intergenic ALR/Alpha|Satellite|centr -97085 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 311-196 chr17 40498714 40498902 + 2 NA intron (NM_032865, intron 1 of 12) AluJb|SINE|Alu 2815 NM_032865 84951 Hs.438292 NM_032865 ENSG00000131746 TNS4 CTEN|PP14434 tensin 4 protein-coding 274-260 chr3 70480939 70481159 + 2 NA Intergenic Intergenic -168411 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 393-214 chr3 26761603 26761802 + 2 NA Intergenic Intergenic 67145 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 255-71 chr12 20709189 20709402 + 2 NA intron (NM_017435, intron 4 of 14) intron (NM_017435, intron 4 of 14) 13830 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 317-318 chr3 126942780 126943055 + 2 NA intron (NM_032343, intron 6 of 7) L1MC4|LINE|L1 -45677 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 486-73 chr14 42558784 42559113 + 2 NA Intergenic L1MA4|LINE|L1 952092 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 288-428 chr8 17316000 17316237 + 2 NA intron (NM_004686, intron 7 of 13) MIR|SINE|MIR 69160 NM_001363172 137492 Hs.343873 NM_152415 ENSG00000155975 VPS37A HCRP1|PQBP2|SPG53 VPS37A subunit of ESCRT-I protein-coding 229-179 chr2 49004712 49004863 + 2 NA intron (NM_000145, intron 4 of 9) intron (NM_000145, intron 4 of 9) -54816 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 309-244 chr2 44465938 44466138 + 2 NA intron (NM_024766, intron 3 of 10) L1MA5A|LINE|L1 104091 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 181-77 chr2 189005063 189005209 + 2 NA intron (NM_000090, intron 40 of 50) intron (NM_000090, intron 40 of 50) 9506 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 329-584 chr8 116101339 116101635 + 2 NA intron (NR_046215, intron 7 of 13) MIR|SINE|MIR 223572 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 434-98 chr15 95964586 95964866 + 2 NA Intergenic MER66B|LTR|ERV1 163115 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 379-316 chr7 46150412 46150724 + 2 NA Intergenic L1MC3|LINE|L1 -229296 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 150-106 chr8 87366870 87366975 + 2 NA intron (NM_173538, intron 10 of 10) LTR78|LTR|ERV1 500507 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 352-362 chr4 59540597 59540852 + 2 NA Intergenic L1ME3|LINE|L1 527151 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 232-399 chr9 75165340 75165563 + 2 NA Intergenic L1MB4|LINE|L1 76937 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 465-74 chr13 92405278 92405680 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -53272 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 403-179 chr20 48047907 48048250 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -57961 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 311-530 chr8 132024738 132024906 + 2 NA intron (NM_001080399, intron 13 of 13) intron (NM_001080399, intron 13 of 13) 34560 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 403-235 chr5 9350236 9350540 + 2 NA intron (NM_003966, intron 3 of 22) MER77|LTR|ERVL -160945 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 213-269 chr7 91892664 91892833 + 2 NA Intergenic Intergenic -12046 NM_001301135 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 312-139 chr14 46300658 46300883 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -170589 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 293-448 chr8 119157286 119157485 + 2 NA Intergenic Intergenic -50978 NM_052886 114569 Hs.201083 NM_052886 ENSG00000147676 MAL2 - mal, T cell differentiation protein 2 (gene/pseudogene) protein-coding 514-52 chr11 125238302 125238663 + 2 NA intron (NM_022062, intron 2 of 12) MIRb|SINE|MIR 73731 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 279-427 chr8 132746757 132746944 + 2 NA intron (NM_144649, intron 5 of 9) intron (NM_144649, intron 5 of 9) 13732 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 383-328 chr5 141208282 141208621 + 2 NA promoter-TSS (NM_018932) promoter-TSS (NM_018932) -268 NM_018932 56124 Hs.429820 NM_018932 ENSG00000120328 PCDHB12 PCDH-BETA12 protocadherin beta 12 protein-coding 300-122 chr14 83123736 83123932 + 2 NA Intergenic Intergenic 481202 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 412-166 chr2 115726816 115727074 + 2 NA intron (NM_001321912, intron 8 of 25) intron (NM_001321912, intron 8 of 25) 383130 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 549-179 chr6 54554213 54554684 + 2 NA Intergenic Intergenic 246007 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 452-154 chr20 52257257 52257642 + 2 NA Intergenic AluJo|SINE|Alu -65464 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 570-74 chr16 12840000 12840445 + 2 NA Intergenic L1MA6|LINE|L1 -36335 NM_018340 55313 Hs.460002 NM_018340 ENSG00000103381 CPPED1 CSTP1 calcineurin like phosphoesterase domain containing 1 protein-coding 389-387 chr9 114750453 114750808 + 2 NA Intergenic L1MEg|LINE|L1 41900 NM_001204344 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 613-99 chr4 182033268 182033687 + 2 NA Intergenic L1PA10|LINE|L1 111038 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 299-244 chr2 198379649 198379810 + 2 NA Intergenic Intergenic -4632 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 392-250 chr5 38583023 38583264 + 2 NA intron (NR_103554, intron 1 of 8) intron (NR_103554, intron 1 of 8) 12262 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 212-106 chr15 47562956 47563124 + 2 NA intron (NM_001198999, intron 3 of 19) L1MB8|LINE|L1 -154465 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 254-102 chr13 113897523 113897704 + 2 NA intron (NM_001278674, intron 1 of 7) intron (NM_001278674, intron 1 of 7) 2510 NM_001278674 643365 Hs.127655 NM_001039767 LINC00452 LINC00453 long intergenic non-protein coding RNA 452 protein-coding 309-109 chr12 52223974 52224159 + 2 NA TTS (NR_027358) TTS (NR_027358) -9177 NM_005556 3855 Hs.411501 NM_005556 ENSG00000135480 KRT7 CK7|K2C7|K7|SCL keratin 7 protein-coding 366-29 chr1 199753508 199753813 + 2 NA Intergenic LTR40a|LTR|ERVL -274050 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 338-532 chr8 46496983 46497253 + 2 NA Intergenic ALR/Alpha|Satellite|centr 120525 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 430-246 chr5 78106610 78106857 + 2 NA intron (NM_003664, intron 20 of 26) intron (NM_003664, intron 20 of 26) 148486 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 395-290 chr6 106814922 106815310 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -27575 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 354-296 chr3 67209442 67209675 + 2 NA Intergenic Intergenic -15906 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 430-19 chr1 227468458 227468767 + 2 NA Intergenic Intergenic -94944 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 441-166 chr3 124515777 124516100 + 2 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -68720 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 364-13 chr1 75711960 75712220 + 2 NA Intergenic Intergenic -12257 NM_001286043 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase medium chain protein-coding 857-11 chr10 75280943 75281510 + 2 NA intron (NR_120651, intron 2 of 3) L2c|LINE|L2 -15157 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 182-145 chr6 27465836 27465991 + 2 NA intron (NR_144688, intron 3 of 8) MLT1D|LTR|ERVL-MaLR 6985 NM_001318892 7738 Hs.158174 NM_007149 ENSG00000096654 ZNF184 kr-ZNF3 zinc finger protein 184 protein-coding 605-59 chr2 225609891 225610441 + 2 NA intron (NM_001371273, intron 5 of 7) MLT1B|LTR|ERVL-MaLR 209280 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 228-193 chr20 53177741 53177933 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -7446 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 477-238 chr5 92365684 92366099 + 2 NA Intergenic LTR50|LTR|ERVL -982574 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 380-234 chr22 33588245 33588616 + 2 NA intron (NM_133642, intron 5 of 14) L1MEd|LINE|L1 116490 NR_145833 109616998 NR_145833 ENSG00000253007 SNORA50B - small nucleolar RNA, H/ACA box 50B snoRNA 315-291 chr21 29702352 29702544 + 2 NA intron (NM_000830, intron 1 of 16) L2a|LINE|L2 -45727 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 255-4 chr1 77766841 77767038 + 2 NA Intergenic L2|LINE|L2 -7060 NM_201624 23032 Hs.480597 NM_015017 ENSG00000077254 USP33 VDU1 ubiquitin specific peptidase 33 protein-coding 230-337 chr6 169549483 169549643 + 2 NA intron (NR_146875, intron 19 of 20) L1MC1|LINE|L1 152466 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 284-339 chr5 173402173 173402405 + 2 NA Intergenic Intergenic 54834 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 510-188 chr3 144095911 144096234 + 2 NA Intergenic Intergenic 122991 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 595-46 chr13 96195340 96195782 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 104722 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 864-23 chr20 44457589 44458247 + 2 NA intron (NR_132343, intron 2 of 2) intron (NR_132343, intron 2 of 2) -7361 NR_109893 101927242 Hs.143307 NR_109893 ENSG00000168746 LINC01430 - long intergenic non-protein coding RNA 1430 ncRNA 347-178 chr17 77877231 77877490 + 2 NA Intergenic Intergenic 6727 NR_028337 400624 Hs.514521 NM_001001685 ENSG00000204283 LINC01973 - long intergenic non-protein coding RNA 1973 ncRNA 399-276 chr7 25504708 25504930 + 2 NA Intergenic Intergenic 158321 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 367-28 chr1 173174456 173174658 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 30975 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 198-96 chr18 9055697 9055836 + 2 NA Intergenic Intergenic -46933 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 302-449 chr8 81360845 81361052 + 2 NA Intergenic Intergenic 80412 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 743-7 chr1 173552416 173553020 + 2 NA intron (NM_178527, intron 11 of 27) Tigger1|DNA|TcMar-Tigger 50354 NM_178527 284525 Hs.494981 NM_178527 ENSG00000162753 SLC9C2 SLC9A11 solute carrier family 9 member C2 (putative) protein-coding 375-237 chr20 14253166 14253490 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 84284 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 243-236 chr2 144179739 144179960 + 2 NA intron (NM_001284238, intron 4 of 13) intron (NM_001284238, intron 4 of 13) 31730 NM_001284233 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 687-120 chr8 89721097 89721678 + 2 NA intron (NR_125822, intron 4 of 4) intron (NR_125822, intron 4 of 4) 36324 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 486-24 chr10 20593066 20593386 + 2 NA Intergenic Intergenic 41256 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 319-275 chr2 175500709 175501005 + 2 NA Intergenic L1M1|LINE|L1 -319147 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 409-53 chr12 61386484 61386830 + 2 NA Intergenic MIR|SINE|MIR 806182 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 556-9 chr1 178766754 178767250 + 2 NA intron (NM_152663, intron 1 of 19) L1PA15|LINE|L1 41758 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 468-98 chr16 12599543 12599954 + 2 NA Intergenic Intergenic -120573 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 345-416 chr5 42798976 42799307 + 2 NA TTS (NM_005410) TTS (NM_005410) 12751 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 333-252 chr2 98369428 98369749 + 2 NA intron (NM_001079878, intron 1 of 6) intron (NM_001079878, intron 1 of 6) 23132 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 281-263 chr20 54905023 54905256 + 2 NA Intergenic L1MA3|LINE|L1 429546 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 192-87 chr18 2337656 2337775 + 2 NA Intergenic L3|LINE|CR1 233790 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 457-39 chr11 108190749 108191128 + 2 NA intron (NM_001321307, intron 4 of 17) AluJr|SINE|Alu 31700 NM_001321307 4863 Hs.171061 NM_002519 ENSG00000149308 NPAT E14|E14/NPAT|p220 nuclear protein, coactivator of histone transcription protein-coding 334-171 chr15 49764599 49764839 + 2 NA Intergenic L1MB1|LINE|L1 143671 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 955-16 chr5 42142251 42142886 + 2 NA Intergenic Intergenic 32777 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 339-560 chr8 47094315 47094515 + 2 NA Intergenic L1PB3|LINE|L1 -94892 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 248-147 chr17 10709759 10709898 + 2 NA intron (NM_020233, intron 3 of 3) intron (NM_020233, intron 3 of 3) 6754 NR_049723 100506898 Hs.674373 NR_049723 MAGOH2P MAGOH2 mago homolog 2, pseudogene pseudo 238-429 chrX 69909780 69909976 + 2 NA intron (NM_001005609, intron 1 of 7) X7B_LINE|LINE|CR1 -112979 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 304-94 chr11 130260295 130260447 + 2 NA intron (NM_001370222, intron 1 of 4) L2c|LINE|L2 54341 NM_014155 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 233-218 chr22 42014924 42015146 + 2 NA intron (NM_152613, intron 1 of 5) L1M4|LINE|L1 16247 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 429-312 chr8 127289416 127289785 + 2 NA TTS (NR_117100) TTS (NR_117100) 44963 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 399-227 chr4 44334253 44334516 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 114425 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 476-206 chr5 4217004 4217402 + 2 NA Intergenic Kanga11a|DNA|TcMar-Tc2 -556278 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 483-269 chr8 104902920 104903373 + 2 NA Intergenic L2c|LINE|L2 -314122 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 156-27 chr12 39921885 39921997 + 2 NA intron (NM_052885, intron 4 of 9) intron (NM_052885, intron 4 of 9) 184140 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 427-115 chr2 70598152 70598542 + 2 NA Intergenic L1MD1|LINE|L1 -44521 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 320-348 chr3 59845431 59845621 + 2 NA intron (NM_001354590, intron 7 of 8) L1MB3|LINE|L1 -187029 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 332-291 chr20 21453839 21454036 + 2 NA Intergenic L2c|LINE|L2 -56411 NM_033176 644524 NM_033176 ENSG00000125816 NKX2-4 NKX2.4|NKX2D NK2 homeobox 4 protein-coding 212-92 chr13 58454478 58454636 + 2 NA Intergenic Intergenic -221440 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 344-128 chr14 31726202 31726394 + 2 NA intron (NM_001201574, intron 1 of 5) L3|LINE|CR1 11729 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 476-223 chr5 83453551 83453891 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -17953 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 340-220 chr18 78905731 78906061 + 2 NA Intergenic Intergenic -74379 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 277-288 chr4 66324566 66324731 + 2 NA Intergenic Intergenic 47824 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 310-305 chr21 28290053 28290266 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -61492 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 536-76 chr14 80013819 80014205 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -197407 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 268-102 chr13 62281046 62281202 + 2 NA Intergenic MIR|SINE|MIR -40181 NR_149075 106144607 Hs.562580 NR_149075 ENSG00000227611 LINC01074 - long intergenic non-protein coding RNA 1074 ncRNA 284-276 chr4 16627132 16627375 + 2 NA intron (NM_001304435, intron 2 of 7) intron (NM_001304435, intron 2 of 7) 271392 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 402-17 chr1 210918301 210918693 + 2 NA intron (NM_002238, intron 7 of 10) intron (NM_002238, intron 7 of 10) 214877 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 352-279 chr20 39728123 39728420 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -276190 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 540-96 chr17 53767827 53768305 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -54861 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 233-199 chr2 224223126 224223249 + 2 NA Intergenic Intergenic 178807 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 201-157 chr3 95580078 95580231 + 2 NA Intergenic Intergenic 103039 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 291-189 chr18 41014162 41014412 + 2 NA Intergenic L1MD3|LINE|L1 506390 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 824-37 chr5 20170425 20171188 + 2 NA intron (NM_001291956, intron 2 of 14) L1PREC2|LINE|L1 -134745 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 342-544 chr9 8020321 8020619 + 2 NA Intergenic Intergenic -220692 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 167-24 chr10 99707450 99707566 + 2 NA 3' UTR (NM_001349963, exon 13 of 13) 3' UTR (NM_001349963, exon 13 of 13) -24726 NM_015960 51076 Hs.16606 NM_015960 ENSG00000119929 CUTC CGI-32 cutC copper transporter protein-coding 269-125 chr14 87277450 87277689 + 2 NA Intergenic L1PREC2|LINE|L1 371791 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 283-400 chr6 124264602 124264830 + 2 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -18289 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 215-195 chr3 81107047 81107247 + 2 NA Intergenic Intergenic 113279 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 565-139 chr5 32873292 32873830 + 2 NA Intergenic Intergenic -73882 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 271-113 chr13 64824466 64824701 + 2 NA Intergenic Intergenic -748572 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 324-57 chr10 62407328 62407531 + 2 NA intron (NM_199451, intron 3 of 7) LTR26|LTR|ERV1 -32302 NR_104162 283045 NR_104162 LOC283045 - uncharacterized LOC283045 ncRNA 432-31 chr10 44492105 44492460 + 2 NA Intergenic L1PA6|LINE|L1 -107185 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 376-428 chr9 77930352 77930616 + 2 NA intron (NM_002072, intron 1 of 6) intron (NM_002072, intron 1 of 6) 101327 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 185-96 chr2 84386062 84386205 + 2 NA Intergenic Intergenic 73147 NM_003849 8802 Hs.270428 NM_003849 ENSG00000163541 SUCLG1 GALPHA|MTDPS9|SUCLA1 succinate-CoA ligase alpha subunit protein-coding 242-248 chr3 174366523 174366686 + 2 NA Intergenic Intergenic -445808 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 299-377 chr5 101592304 101592598 + 2 NA Intergenic L1M4b|LINE|L1 -689169 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 412-98 chr15 38182847 38183096 + 2 NA Intergenic Intergenic -69865 NM_152594 161742 Hs.525781 NM_152594 ENSG00000166068 SPRED1 LGSS|NFLS|PPP1R147|hSpred1|spred-1 sprouty related EVH1 domain containing 1 protein-coding 272-341 chr5 43831980 43832244 + 2 NA Intergenic Intergenic -228882 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 348-126 chr13 99069739 99070016 + 2 NA intron (NM_015296, intron 1 of 55) intron (NM_015296, intron 1 of 55) 16817 NM_001318849 23348 Hs.596105 NM_015296 ENSG00000088387 DOCK9 ZIZ1|ZIZIMIN1 dedicator of cytokinesis 9 protein-coding 195-40 chr11 97055760 97055895 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 547402 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 299-407 chr7 3145066 3145323 + 2 NA intron (NR_126024, intron 3 of 3) AluSg|SINE|Alu 13379 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 500-175 chr22 39924987 39925385 + 2 NA intron (NM_004810, intron 1 of 7) intron (NM_004810, intron 1 of 7) -1418 NM_001291828 9402 Hs.517499 NM_004810 ENSG00000100351 GRAP2 GADS|GRAP-2|GRB2L|GRBLG|GRID|GRPL|GrbX|Grf40|Mona|P38 GRB2 related adaptor protein 2 protein-coding 262-190 chr19 58081437 58081672 + 2 NA Intergenic L1MC4|LINE|L1 16677 NM_001145544 65982 Hs.235390 NM_023926 ENSG00000121413 ZSCAN18 ZNF447 zinc finger and SCAN domain containing 18 protein-coding 489-196 chr4 85272625 85272989 + 2 NA Intergenic L1PA16|LINE|L1 -202343 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 385-330 chr6 65237773 65238051 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -63506 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 200-92 chr16 2396650 2396789 + 2 NA intron (NR_003574, intron 9 of 16) L1MEd|LINE|L1 -32728 NM_001323538 899 Hs.1973 NM_001761 ENSG00000162063 CCNF FBX1|FBXO1 cyclin F protein-coding 240-187 chr18 7297802 7297984 + 2 NA Intergenic L1MB7|LINE|L1 66789 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 295-507 chr9 126081775 126081998 + 2 NA Intergenic Intergenic 194029 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 324-171 chr14 85993322 85993502 + 2 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 58734 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 281-372 chr5 141237277 141237469 + 2 NA non-coding (NR_001281, exon 1 of 1) non-coding (NR_001281, exon 1 of 1) -2748 NR_001282 84054 Hs.570898 NR_001282 PCDHB19P PCDH-PSI5|PCDHB19 protocadherin beta 19 pseudogene pseudo 360-413 chr6 95641243 95641541 + 2 NA Intergenic MER4-int|LTR|ERV1 63857 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 349-14 chr1 65145129 65145377 + 2 NA Intergenic MIR3|SINE|MIR -2296 NM_203464 205 Hs.10862 NM_013410 ENSG00000162433 AK4 AK 4|AK3|AK3L1|AK3L2 adenylate kinase 4 protein-coding 239-211 chr20 54472368 54472537 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -3141 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 213-248 chr6 9348730 9348888 + 2 NA Intergenic LTR16E2|LTR|ERVL 696600 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 307-478 chr8 72884975 72885274 + 2 NA intron (NM_004770, intron 2 of 2) L1ME3Cz|LINE|L1 -123740 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 308-297 chr3 74177258 74177456 + 2 NA Intergenic Intergenic 343783 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 257-160 chr18 65654087 65654333 + 2 NA Intergenic Intergenic -96042 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 225-368 chr8 118669158 118669344 + 2 NA intron (NR_038210, intron 3 of 4) MER5B|DNA|hAT-Charlie -47288 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 361-363 chr5 82769128 82769405 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -70889 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 260-106 chr12 68936688 68936863 + 2 NA intron (NM_001874, intron 1 of 8) intron (NM_001874, intron 1 of 8) -3576 NM_001005502 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 217-138 chr16 23758988 23759175 + 2 NA TTS (NM_022097) TTS (NM_022097) 4055 NM_022097 63928 Hs.178589 NM_022097 ENSG00000166869 CHP2 - calcineurin like EF-hand protein 2 protein-coding 334-341 chr3 44665694 44666011 + 2 NA intron (NR_157564, intron 1 of 2) HAL1|LINE|L1 17120 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 468-54 chr12 13701745 13702113 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 278427 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 266-408 chr8 47547891 47548137 + 2 NA intron (NM_001352958, intron 10 of 21) L1MD1|LINE|L1 -106074 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 127-12 chr10 61412991 61413075 + 2 NA intron (NR_134508, intron 6 of 6) intron (NR_134508, intron 6 of 6) -39606 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 333-211 chr19 14717319 14717599 + 2 NA intron (NM_001352240, intron 11 of 12) intron (NM_001352240, intron 11 of 12) 27411 NM_001352244 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 500-29 chr10 65615674 65616012 + 2 NA intron (NR_120647, intron 3 of 5) intron (NR_120647, intron 3 of 5) 44418 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 412-26 chr10 44291653 44292024 + 2 NA promoter-TSS (NM_001258000) promoter-TSS (NM_001258000) -912 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 365-147 chr16 78914047 78914341 + 2 NA intron (NM_001291997, intron 7 of 7) L2a|LINE|L2 686543 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 309-211 chr18 1907743 1908022 + 2 NA Intergenic Intergenic -548253 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 128-77 chr8 99170300 99170375 + 2 NA intron (NM_017890, intron 16 of 61) intron (NM_017890, intron 16 of 61) 157071 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 282-309 chr3 133970633 133970871 + 2 NA intron (NM_005630, intron 3 of 13) intron (NM_005630, intron 3 of 13) -40940 NR_161373 80111 Hs.287691 NM_025041 ENSG00000174640 C3orf36 - chromosome 3 open reading frame 36 ncRNA 479-47 chr12 117716686 117717019 + 2 NA intron (NM_173598, intron 4 of 19) MIRc|SINE|MIR 252138 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 581-104 chr3 134177548 134177921 + 2 NA intron (NM_001005861, intron 11 of 14) intron (NM_001005861, intron 11 of 14) 73010 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 501-211 chr5 96082123 96082510 + 2 NA intron (NR_130776, intron 1 of 4) intron (NR_130776, intron 1 of 4) 3178 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 313-326 chr3 11409047 11409301 + 2 NA intron (NM_001144912, intron 16 of 16) MER47B|DNA|TcMar-Tigger 136777 NM_001136031 10533 Hs.38032 NM_006395 ENSG00000197548 ATG7 APG7-LIKE|APG7L|GSA7 autophagy related 7 protein-coding 434-88 chr14 89136661 89136911 + 2 NA Intergenic L1MEc|LINE|L1 280447 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 346-529 chr9 96712345 96712521 + 2 NA Intergenic AluJb|SINE|Alu -13388 NR_026792 441455 Hs.229613 NR_026792 LOC441455 - makorin ring finger protein 1 pseudogene pseudo 270-427 chr9 72950468 72950672 + 2 NA intron (NM_000689, intron 1 of 12) intron (NM_000689, intron 1 of 12) 2483 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 323-16 chr1 98108284 98108474 + 2 NA Intergenic Intergenic -58686 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 179-41 chr19 52463797 52463907 + 2 NA intron (NM_001366182, intron 3 of 5) HERVKC4-int|LTR|ERVK 10299 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 313-91 chr11 100441054 100441343 + 2 NA Intergenic L1MC2|LINE|L1 -246090 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 281-407 chr7 7049104 7049280 + 2 NA Intergenic Intergenic 17853 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 237-328 chr6 64466694 64466877 + 2 NA intron (NM_001292009, intron 26 of 43) L1MA8|LINE|L1 659949 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 131-60 chr4 187629268 187629333 + 2 NA intron (NR_110436, intron 2 of 2) L1M3e|LINE|L1 43341 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 235-280 chr5 44068253 44068425 + 2 NA Intergenic Intergenic -320393 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 456-99 chr15 25081307 25081586 + 2 NA TTS (NR_003330) TTS (NR_003330) 160 NR_003330 100033427 NR_003330 ENSG00000207174 SNORD116-15 HBII-85-15 small nucleolar RNA, C/D box 116-15 snoRNA 783-48 chr20 38239039 38239451 + 2 NA intron (NR_145960, intron 2 of 10) LTR16A1|LTR|ERVL -20930 NR_104170 149684 Hs.628250 NR_104170 ENSG00000285347 LOC149684 - uncharacterized LOC149684 ncRNA 276-418 chr6 149780714 149780950 + 2 NA intron (NM_001252050, intron 3 of 6) L1MB7|LINE|L1 31091 NM_001360456 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 155-40 chr14 58692553 58692655 + 2 NA Intergenic Intergenic 53767 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 302-102 chr12 38598434 38598636 + 2 NA Intergenic Intergenic 281761 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 428-243 chr5 131926224 131926569 + 2 NA intron (NM_001303622, intron 5 of 12) L1MB1|LINE|L1 19267 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 397-299 chr7 27609801 27610128 + 2 NA intron (NM_152740, intron 4 of 7) AluSx|SINE|Alu -6010 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 307-381 chr5 42786474 42786752 + 2 NA intron (NM_001134848, intron 6 of 8) L1PA17|LINE|L1 25279 NM_005410 6414 Hs.275775 NM_005410 ENSG00000250722 SELENOP SELP|SEPP|SEPP1|SeP selenoprotein P protein-coding 196-18 chr1 160824470 160824658 + 2 NA intron (NM_002348, intron 9 of 9) intron (NM_002348, intron 9 of 9) 28390 NM_001033667 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 476-143 chr2 108835974 108836438 + 2 NA intron (NM_001351559, intron 10 of 11) L1MB2|LINE|L1 49435 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 380-377 chr7 138438398 138438643 + 2 NA Intergenic Intergenic -21739 NM_003852 8805 Hs.490287 NM_003852 ENSG00000122779 TRIM24 PTC6|RNF82|TF1A|TIF1|TIF1A|TIF1ALPHA|hTIF1 tripartite motif containing 24 protein-coding 814-21 chr14 56247309 56247871 + 2 NA intron (NM_021255, intron 2 of 5) L3|LINE|CR1 129179 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 307-364 chr5 2482024 2482231 + 2 NA Intergenic L1M4|LINE|L1 -169926 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 341-304 chr20 55543043 55543336 + 2 NA Intergenic Intergenic -115992 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 354-453 chr8 49755421 49755725 + 2 NA Intergenic L3|LINE|CR1 -154223 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 391-49 chr10 115522238 115522491 + 2 NA intron (NM_207303, intron 25 of 28) MSTB1|LTR|ERVL-MaLR 428999 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 300-5 chr1 55948100 55948311 + 2 NA intron (NR_147161, intron 1 of 1) intron (NR_147161, intron 1 of 1) 3118 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 305-406 chr4 134179151 134179318 + 2 NA Intergenic L1PA15|LINE|L1 22555 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 287-376 chr7 28978249 28978400 + 2 NA Intergenic AluJr4|SINE|Alu -1643 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 438-7 chr1 48621271 48621611 + 2 NA intron (NM_001323575, intron 9 of 12) intron (NM_001323575, intron 9 of 12) -149233 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 351-45 chr10 56134787 56134974 + 2 NA Intergenic Intergenic 226379 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 357-375 chr6 14200057 14200384 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 82448 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 306-348 chr4 35459410 35459573 + 2 NA Intergenic L1M1|LINE|L1 784448 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 247-413 chr8 107137946 107138091 + 2 NA Intergenic (TACTATA)n|Simple_repeat|Simple_repeat 198497 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 342-56 chr10 23327753 23328020 + 2 NA intron (NM_153714, intron 2 of 4) L1MEd|LINE|L1 -16071 NR_155752 105376453 NR_155752 LOC105376453 - uncharacterized LOC105376453 ncRNA 277-163 chr18 52749120 52749374 + 2 NA intron (NM_005215, intron 1 of 28) LTR2752|LTR|ERV1 409050 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 280-147 chr16 49322043 49322202 + 2 NA Intergenic HAL1|LINE|L1 -40284 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 616-29 chr12 65707404 65707755 + 2 NA Intergenic L1MA5|LINE|L1 -65207 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 416-21 chr1 202821529 202821911 + 2 NA intron (NR_038135, intron 1 of 2) intron (NR_038135, intron 1 of 2) 1463 NR_038135 641515 Hs.23459 NR_038135 ENSG00000184774 MGAT4EP - MGAT4 family member E, pseudogene pseudo 431-121 chr2 14993606 14993916 + 2 NA Intergenic Intergenic 361044 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 510-247 chr6 83137777 83138230 + 2 NA exon (NM_001199942, exon 21 of 40) exon (NM_001199942, exon 21 of 40) 55262 NM_001199919 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 231-299 chr5 158668205 158668360 + 2 NA Intergenic L1ME4b|LINE|L1 -258509 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 220-193 chr2 229419574 229419691 + 2 NA intron (NM_139072, intron 8 of 12) intron (NM_139072, intron 8 of 12) -148345 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 458-87 chr15 60805898 60806177 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 124468 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 304-380 chr4 64712227 64712394 + 2 NA Intergenic Intergenic 292190 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 312-386 chr4 105404384 105404577 + 2 NA intron (NM_176867, intron 1 of 5) intron (NM_176867, intron 1 of 5) -51599 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 511-61 chr13 96355845 96356221 + 2 NA intron (NM_153456, intron 1 of 1) Tigger1|DNA|TcMar-Tigger -71196 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 371-85 chr12 79073051 79073388 + 2 NA intron (NM_005639, intron 3 of 10) AluJr|SINE|Alu 27527 NM_001135806 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 491-247 chr7 55313065 55313406 + 2 NA Intergenic Intergenic -52213 NM_018697 55915 Hs.595384 NM_018697 ENSG00000132434 LANCL2 GPR69B|TASP LanC like 2 protein-coding 345-393 chr4 107798057 107798332 + 2 NA Intergenic MIR|SINE|MIR -26371 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 408-206 chr3 40223252 40223513 + 2 NA intron (NM_001284424, intron 11 of 15) intron (NM_001284424, intron 11 of 15) 86316 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 323-184 chr16 78903826 78904007 + 2 NA intron (NM_001291997, intron 7 of 7) MIR|SINE|MIR 696821 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 361-69 chr11 28371909 28372221 + 2 NA Intergenic L1MA4|LINE|L1 105483 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 234-211 chr20 24834393 24834591 + 2 NA Intergenic MIRb|SINE|MIR -114777 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 331-122 chr12 65481956 65482200 + 2 NA intron (NR_120431, intron 3 of 3) (CTTTCT)n|Simple_repeat|Simple_repeat 75233 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 342-245 chr2 114147985 114148170 + 2 NA Intergenic AluJo|SINE|Alu -168093 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 293-481 chr9 118068397 118068635 + 2 NA Intergenic L1ME1|LINE|L1 364113 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 521-9 chr1 105953679 105954144 + 2 NA intron (NR_146609, intron 5 of 5) intron (NR_146609, intron 5 of 5) 74342 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 449-176 chr3 133586926 133587267 + 2 NA intron (NM_001282764, intron 4 of 4) intron (NM_001282764, intron 4 of 4) 12662 NM_001282764 55573 Hs.518265 NM_017548 ENSG00000091527 CDV3 H41 CDV3 homolog protein-coding 332-359 chr3 191992832 191993061 + 2 NA Intergenic L1PBa1|LINE|L1 -245684 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 279-158 chr2 5209552 5209748 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 481468 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 314-214 chr16 76272705 76272888 + 2 NA Intergenic L1MB2|LINE|L1 -4605 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 238-144 chr18 2844946 2845148 + 2 NA Intergenic Intergenic -1959 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 228-11 chr1 93801074 93801229 + 2 NA intron (NM_001261408, intron 2 of 13) ERV24B_Prim-int|LTR|ERV1 -25768 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 300-4 chr1 45742454 45742706 + 2 NA intron (NM_001145349, intron 2 of 9) AluJb|SINE|Alu 8073 NM_005897 3652 Hs.744252 NM_005897 ENSG00000197429 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 312-382 chr4 96648917 96649162 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 338336 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 594-70 chr2 80844403 80844851 + 2 NA Intergenic LTR33|LTR|ERVL 531248 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 482-178 chr4 30514157 30514447 + 2 NA Intergenic Intergenic -206067 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 349-240 chr2 16732663 16732985 + 2 NA Intergenic L1MEd|LINE|L1 -66990 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 231-47 chr10 127635658 127635852 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 86406 NM_001030013 594857 Hs.643423 NM_001030013 ENSG00000214285 NPS - neuropeptide S protein-coding 412-331 chr8 117277454 117277763 + 2 NA Intergenic Intergenic 142613 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 337-195 chr16 78931036 78931302 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 669568 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 408-68 chr11 90559592 90559873 + 2 NA intron (NR_104190, intron 2 of 6) L1PA16|LINE|L1 -3875 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 591-138 chr5 131023170 131023640 + 2 NA Intergenic (A)n|Simple_repeat|Simple_repeat 141851 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 422-212 chr4 75936936 75937297 + 2 NA intron (NM_001363719, intron 2 of 8) intron (NM_001363719, intron 2 of 8) 3897 NM_001042402 27163 Hs.437365 NM_014435 ENSG00000138744 NAAA ASAHL|PLT N-acylethanolamine acid amidase protein-coding 475-16 chr1 214854346 214854635 + 2 NA Intergenic Intergenic -151052 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 496-51 chr11 110006992 110007406 + 2 NA Intergenic L1M6|LINE|L1 -86193 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 148-77 chr6 14261352 14261480 + 2 NA Intergenic L1MEg|LINE|L1 24038 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 210-195 chr4 61632254 61632454 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 430182 NM_001371342 576-38 chr13 26729924 26730317 + 2 NA Intergenic Intergenic 30666 NM_005288 2835 Hs.123034 NM_005288 ENSG00000132975 GPR12 GPCR12|GPCR21|PPP1R84 G protein-coupled receptor 12 protein-coding 229-181 chr2 57001486 57001648 + 2 NA Intergenic Intergenic -815797 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 727-36 chr15 96936791 96937299 + 2 NA Intergenic L1MEg|LINE|L1 153610 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 134-85 chr8 32022392 32022505 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -3288 NR_104158 100856811 Hs.97362 NR_104156 NRG1-IT1 - NRG1 intronic transcript 1 ncRNA 388-235 chr3 146529720 146530086 + 2 NA intron (NM_001363872, intron 2 of 7) intron (NM_001363872, intron 2 of 7) 14652 NM_001363872 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 261-396 chr8 137352102 137352285 + 2 NA Intergenic L1PA14|LINE|L1 61395 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 383-209 chr2 191839600 191839938 + 2 NA intron (NM_004657, intron 1 of 1) intron (NM_004657, intron 1 of 1) 7319 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 586-150 chr8 62100257 62100690 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -148381 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 504-247 chr7 118688148 118688516 + 2 NA Intergenic Intergenic 463628 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 277-62 chr10 95492094 95492252 + 2 NA intron (NM_001290295, intron 1 of 24) intron (NM_001290295, intron 1 of 24) -50993 NM_001290298 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 359-494 chr8 134019588 134019864 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 133230 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 231-121 chr16 79432439 79432606 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger 168215 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 258-180 chr2 24603080 24603233 + 2 NA intron (NM_001362950, intron 3 of 23) Tigger1|DNA|TcMar-Tigger 18679 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 219-224 chr22 47359040 47359240 + 2 NA intron (NR_144462, intron 1 of 3) intron (NR_144462, intron 1 of 3) 13569 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 642-92 chr5 61730727 61731173 + 2 NA TTS (NR_126525) TTS (NR_126525) 4748 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 392-104 chr16 26377453 26377795 + 2 NA Intergenic L2a|LINE|L2 352387 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 346-338 chr4 2155322 2155554 + 2 NA intron (NM_181808, intron 16 of 25) intron (NM_181808, intron 16 of 25) 86683 NM_181808 353497 Hs.368454 NM_181808 ENSG00000130997 POLN POL4P DNA polymerase nu protein-coding 299-93 chr11 133184336 133184600 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) -240700 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 439-15 chr1 173078442 173078714 + 2 NA Intergenic MER4D0|LTR|ERV1 -27615 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 328-497 chr6 49404094 49404408 + 2 NA Intergenic L1P4|LINE|L1 59002 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 299-459 chr8 103370009 103370259 + 2 NA Intergenic Intergenic -1404 NM_138455 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 282-352 chr4 116986493 116986712 + 2 NA Intergenic Intergenic 98974 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 518-296 chr8 67933610 67933895 + 2 NA Intergenic Intergenic -18294 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 266-354 chr5 169183371 169183569 + 2 NA intron (NM_003062, intron 4 of 35) intron (NM_003062, intron 4 of 35) 80224 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 464-238 chr7 35330685 35331041 + 2 NA intron (NR_038864, intron 1 of 2) intron (NR_038864, intron 1 of 2) 17008 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 352-399 chr5 11204269 11204521 + 2 NA intron (NM_001288715, intron 9 of 20) intron (NM_001288715, intron 9 of 20) 384522 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 377-248 chr20 45223380 45223707 + 2 NA intron (NM_003008, intron 2 of 2) intron (NM_003008, intron 2 of 2) 2170 NM_003008 6407 Hs.537218 NM_003008 ENSG00000124157 SEMG2 SGII semenogelin 2 protein-coding 543-157 chr21 18454470 18454785 + 2 NA Intergenic MLT2B2|LTR|ERVL -50842 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 201-15 chr1 188315299 188315453 + 2 NA Intergenic Intergenic 871748 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 257-24 chr1 180141833 180141990 + 2 NA Intergenic Intergenic -12922 NM_001004128 5768 Hs.719176 NM_002826 ENSG00000116260 QSOX1 Q6|QSCN6 quiescin sulfhydryl oxidase 1 protein-coding 354-497 chr9 91012977 91013196 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 62046 NR_033912 100129316 Hs.458154 NR_033912 LOC100129316 - uncharacterized LOC100129316 ncRNA 739 chr1 95523744 95524170 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 13841 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 441-165 chr3 119800529 119800959 + 2 NA intron (NM_022002, intron 1 of 8) intron (NM_022002, intron 1 of 8) 18034 NM_022002 8856 Hs.7303 NM_003889 ENSG00000144852 NR1I2 BXR|ONR1|PAR|PAR1|PAR2|PARq|PRR|PXR|SAR|SXR nuclear receptor subfamily 1 group I member 2 protein-coding 187-108 chr3 83569625 83569749 + 2 NA Intergenic Intergenic 1299888 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 494-2 chr1 29420512 29420837 + 2 NA Intergenic L1MA4A|LINE|L1 -70560 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 164-70 chr21 44361011 44361144 + 2 NA intron (NM_003307, intron 2 of 31) L1MD2|LINE|L1 7476 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 744-52 chr4 148674177 148674767 + 2 NA Intergenic AluJb|SINE|Alu -229774 NM_001354819 4306 Hs.163924 NM_000901 ENSG00000151623 NR3C2 MCR|MLR|MR|NR3C2VIT nuclear receptor subfamily 3 group C member 2 protein-coding 321-506 chr6 128817579 128817752 + 2 NA Intergenic Intergenic -65473 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 205-248 chr6 126916722 126916872 + 2 NA Intergenic Intergenic -201874 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 245-189 chr2 60415703 60415884 + 2 NA Intergenic L1ME1|LINE|L1 -24418 NR_132992 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 241-9 chr1 62185910 62186111 + 2 NA Intergenic AluSz6|SINE|Alu -8839 NM_001164835 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 260-402 chr7 27411377 27411614 + 2 NA Intergenic Intergenic -164266 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 448-187 chr4 96717331 96717755 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 406840 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 564-167 chr5 163125506 163125880 + 2 NA Intergenic Intergenic -311878 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 405-315 chr8 53968150 53968527 + 2 NA intron (NM_201437, intron 8 of 8) intron (NM_201437, intron 8 of 8) 54110 NM_006756 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 448-206 chr5 32709714 32710071 + 2 NA promoter-TSS (NM_001204376) promoter-TSS (NM_001204376) -745 NM_001204376 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 264-40 chr10 39128851 39129085 + 2 NA Intergenic ALR/Alpha|Satellite|centr 432372 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 474-110 chr17 58822596 58823001 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 66929 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 682-102 chr8 89629485 89630124 + 2 NA Intergenic LTR54|LTR|ERV1 127907 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 261-64 chr11 74520747 74520967 + 2 NA Intergenic L1MB4|LINE|L1 -27133 NM_001144869 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 454-329 chr8 142948547 142948987 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -30924 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 330-31 chr1 166598536 166598844 + 2 NA Intergenic LTR28C|LTR|ERV1 -5226 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 274-11 chr1 107235616 107235797 + 2 NA intron (NM_001113226, intron 1 of 6) L1MCb|LINE|L1 87637 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 324-103 chr11 103832219 103832433 + 2 NA Intergenic L1PA13|LINE|L1 -17580 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 339-13 chr1 60955559 60955755 + 2 NA intron (NR_110618, intron 2 of 3) Charlie4a|DNA|hAT-Charlie 15119 NR_110618 100996570 Hs.46616 NR_110617 ENSG00000237928 NFIA-AS2 - NFIA antisense RNA 2 ncRNA 318-418 chr4 154224146 154224371 + 2 NA Intergenic L1MEg|LINE|L1 267541 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 533-123 chr21 29747202 29747717 + 2 NA promoter-TSS (NR_027021) promoter-TSS (NR_027021) -716 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 548-63 chr13 63576160 63576564 + 2 NA Intergenic Intergenic -161073 NR_002171 283491 Hs.363054 NR_002171 OR7E156P - olfactory receptor family 7 subfamily E member 156 pseudogene pseudo 206-224 chr5 163204597 163204734 + 2 NA Intergenic Intergenic -232906 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 200-2 chr1 27917683 27917827 + 2 NA Intergenic Intergenic -2958 NM_001297558 6118 Hs.79411 NM_002946 ENSG00000117748 RPA2 REPA2|RP-A p32|RP-A p34|RPA32 replication protein A2 protein-coding 285-397 chr8 15504146 15504312 + 2 NA Intergenic MIR|SINE|MIR -35858 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 478-224 chr4 166691248 166691600 + 2 NA Intergenic Intergenic 543002 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 377-252 chr20 57134146 57134346 + 2 NA Intergenic Intergenic -79450 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 224-176 chr20 40530950 40531106 + 2 NA Intergenic (CATA)n|Simple_repeat|Simple_repeat 158208 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 324-290 chr2 174317415 174317675 + 2 NA Intergenic Intergenic -8482 NR_038897 285084 Hs.275398 NR_038897 ENSG00000231453 LINC01305 - long intergenic non-protein coding RNA 1305 ncRNA 120-36 chr4 65204206 65204301 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -199753 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 431-73 chr13 98204299 98204704 + 2 NA intron (NM_005766, intron 1 of 26) L1M7|LINE|L1 -4023 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 859 chr1 159505833 159506426 + 2 NA Intergenic L1MA4|LINE|L1 29878 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 157-49 chr17 74682090 74682235 + 2 NA intron (NM_175738, intron 1 of 8) intron (NM_175738, intron 1 of 8) 11031 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 355-451 chr7 16403674 16403916 + 2 NA intron (NM_001101426, intron 2 of 9) LTR37A|LTR|ERV1 17743 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 376-194 chr2 124861570 124861815 + 2 NA intron (NM_130773, intron 19 of 23) intron (NM_130773, intron 19 of 23) 836405 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 161-63 chr22 43626358 43626457 + 2 NA intron (NM_198856, intron 18 of 29) intron (NM_198856, intron 18 of 29) 110153 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 189-115 chr21 23522970 23523118 + 2 NA Intergenic Intergenic -138209 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 235-348 chr8 50837319 50837501 + 2 NA Intergenic L1MD|LINE|L1 673279 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 613-146 chr9 76834237 76834666 + 2 NA intron (NM_001308048, intron 4 of 17) L1MEg|LINE|L1 70015 NR_132313 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 296-151 chr15 25748772 25748989 + 2 NA intron (NM_024490, intron 2 of 20) AluSx|SINE|Alu 99945 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 220-179 chr2 117733595 117733771 + 2 NA Intergenic L1MA3|LINE|L1 -81008 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 673-97 chr5 64367695 64368303 + 2 NA intron (NM_001113561, intron 7 of 7) intron (NM_001113561, intron 7 of 7) -138016 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 786-13 chr11 39288626 39289171 + 2 NA Intergenic L3|LINE|CR1 640040 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 326-287 chr20 743925 744200 + 2 NA Intergenic L1M4b|LINE|L1 24438 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 270-248 chr3 146711945 146712171 + 2 NA Intergenic L1M5|LINE|L1 -105842 NM_001085420 389158 Hs.254692 NM_001085420 ENSG00000231213 PLSCR5 - phospholipid scramblase family member 5 protein-coding 501-111 chr2 112946799 112947255 + 2 NA Intergenic MER61F|LTR|ERV1 -30979 NM_001278568 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 310-480 chr7 53675900 53676175 + 2 NA intron (NR_038371, intron 5 of 5) L1MA9|LINE|L1 135894 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 467-252 chr6 155686255 155686714 + 2 NA Intergenic Intergenic 171640 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 614-84 chr3 94583143 94583569 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -354907 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 461-268 chr8 87310601 87310922 + 2 NA intron (NM_173538, intron 8 of 10) L1PA16|LINE|L1 444346 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 369-315 chr5 24841047 24841370 + 2 NA promoter-TSS (NR_037896) promoter-TSS (NR_037896) -625 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 386-13 chr1 118251815 118252130 + 2 NA Intergenic Intergenic -66744 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 231-275 chr5 21216190 21216332 + 2 NA Intergenic Intergenic -243219 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 261-242 chr3 79825514 79825769 + 2 NA Intergenic Intergenic -57643 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 377-223 chr2 146306721 146307091 + 2 NA Intergenic Intergenic -280151 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 243-403 chr6 149746796 149746954 + 2 NA promoter-TSS (NR_104456) promoter-TSS (NR_104456) -346 NM_198887 348995 Hs.510375 NM_024647 ENSG00000120253 NUP43 bA350J20.1|p42 nucleoporin 43 protein-coding 459-274 chr7 24505743 24506068 + 2 NA Intergenic Intergenic -67547 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 427-208 chr5 62027839 62028122 + 2 NA Intergenic L1ME4b|LINE|L1 -278182 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 278-48 chr11 16657040 16657194 + 2 NA intron (NM_001367872, intron 2 of 16) L1MC2|LINE|L1 81360 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 243-281 chr3 77205936 77206123 + 2 NA intron (NM_001290039, intron 2 of 26) MLT1C|LTR|ERVL-MaLR 108017 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 603-33 chr12 84518277 84518790 + 2 NA Intergenic L1MEf|LINE|L1 394266 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 375-434 chr8 144616574 144616803 + 2 NA intron (NM_001308208, intron 1 of 10) intron (NM_001308208, intron 1 of 10) -3185 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 302-189 chr19 28641052 28641311 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 34493 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 724-25 chr17 33728658 33729335 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -195236 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 736-40 chr2 155807680 155808259 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 446962 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 364-439 chr8 77517041 77517279 + 2 NA Intergenic Intergenic 66463 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 206-193 chr4 181459296 181459457 + 2 NA Intergenic L1ME1|LINE|L1 -194347 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 256-262 chr3 90052060 90052277 + 2 NA Intergenic Intergenic 944547 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 198-108 chr19 36516958 36517122 + 2 NA intron (NM_001166038, intron 2 of 2) HAL1|LINE|L1 11231 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 465-23 chr10 20838070 20838480 + 2 NA intron (NM_006393, intron 13 of 27) Tigger1|DNA|TcMar-Tigger 59327 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 589-96 chr3 144451224 144451664 + 2 NA Intergenic L2c|LINE|L2 478363 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 287-399 chr8 72672282 72672546 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -59631 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 299-415 chr7 46678109 46678398 + 2 NA Intergenic Intergenic 18869 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 261-325 chr5 178517106 178517294 + 2 NA intron (NM_173465, intron 2 of 28) L2a|LINE|L2 73193 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 390-7 chr1 63236122 63236377 + 2 NA intron (NR_038252, intron 4 of 11) L1MEd|LINE|L1 81008 NR_038252 199899 Hs.116210 NR_038252 ENSG00000224209 LINC00466 - long intergenic non-protein coding RNA 466 ncRNA 195-70 chr15 58020550 58020722 + 2 NA intron (NM_170696, intron 1 of 11) L1ME3F|LINE|L1 -6613 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 344-419 chr6 41859273 41859461 + 2 NA intron (NM_001286554, intron 1 of 5) L2c|LINE|L2 12270 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 311-435 chr6 71459754 71459934 + 2 NA TTS (NR_121615) TTS (NR_121615) 38817 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 355-140 chr13 31501164 31501409 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -238240 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 617-68 chr2 144782972 144783393 + 2 NA intron (NR_033870, intron 2 of 4) intron (NR_033870, intron 2 of 4) 115215 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 283-153 chr15 94975844 94976102 + 2 NA Intergenic L1ME3B|LINE|L1 120610 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 253-11 chr1 95978747 95978909 + 2 NA Intergenic L1ME1|LINE|L1 -13240 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 358-383 chr5 114827406 114827601 + 2 NA Intergenic L1MA9|LINE|L1 -54090 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 161-7 chr1 212159029 212159173 + 2 NA Intergenic Intergenic 75635 NR_125983 101929541 Hs.632493 NR_125982 ENSG00000226251 LINC02608 - long intergenic non-protein coding RNA 2608 ncRNA 314-106 chr11 98408172 98408466 + 2 NA Intergenic AluY|SINE|Alu -612630 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 266-420 chr8 89495943 89496122 + 2 NA Intergenic Intergenic 261679 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 593-9 chr1 211125092 211125649 + 2 NA intron (NM_002238, intron 1 of 10) intron (NM_002238, intron 1 of 10) 8004 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 219-84 chr13 32564137 32564315 + 2 NA Intergenic UCON84|Unknown|Unknown -22226 NM_015032 23047 Hs.744901 NM_015032 ENSG00000083642 PDS5B APRIN|AS3|CG008 PDS5 cohesin associated factor B protein-coding 238-300 chr5 89777312 89777484 + 2 NA Intergenic L1MCa|LINE|L1 239322 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 327-456 chr7 49444886 49445093 + 2 NA Intergenic L1MB7|LINE|L1 -328649 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 355-218 chr19 31139085 31139330 + 2 NA Intergenic Intergenic -28303 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 256-357 chr6 42352649 42352853 + 2 NA intron (NM_001297573, intron 3 of 17) L1ME4a|LINE|L1 99300 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 484-203 chr5 7334276 7334714 + 2 NA Intergenic Intergenic 13482 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 864-30 chr4 171251736 171252340 + 2 NA Intergenic L1M5|LINE|L1 65854 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 496-313 chrX 95848492 95848956 + 2 NA Intergenic L1MA1|LINE|L1 489178 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 299-454 chr8 98348964 98349170 + 2 NA Intergenic L1MC1|LINE|L1 44671 NR_162095 113218497 NR_162095 MIR9903 - microRNA 9903 ncRNA 401-40 chr10 92585940 92586336 + 2 NA Intergenic Intergenic -6992 NM_004523 3832 Hs.8878 NM_004523 ENSG00000138160 KIF11 EG5|HKSP|KNSL1|MCLMR|TRIP5 kinesin family member 11 protein-coding 239-381 chr7 81489924 81490133 + 2 NA Intergenic Intergenic 71791 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 412-16 chr1 245120928 245121295 + 2 NA intron (NM_001143943, intron 6 of 6) intron (NM_001143943, intron 6 of 6) -33874 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 251-185 chr2 144311011 144311194 + 2 NA intron (NM_001354354, intron 1 of 12) UCON66|Unknown|Unknown -15789 NM_001354361 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 170-133 chr8 14834024 14834146 + 2 NA intron (NM_139167, intron 1 of 7) X7B_LINE|LINE|CR1 19425 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 274-196 chr2 39352802 39352999 + 2 NA intron (NM_003618, intron 3 of 33) intron (NM_003618, intron 3 of 33) 84385 NM_003618 8491 Hs.655750 NM_003618 ENSG00000011566 MAP4K3 GLK|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1 mitogen-activated protein kinase kinase kinase kinase 3 protein-coding 428-319 chr9 94187501 94187847 + 2 NA intron (NR_160773, intron 2 of 2) L1M4|LINE|L1 8840 NR_029481 406886 NR_029481 ENSG00000199133 MIRLET7D LET7D|MIRNLET7D|hsa-let-7d|let-7d microRNA let-7d ncRNA 305-126 chr12 70454323 70454521 + 2 NA Intergenic Intergenic 88132 NM_014505 27345 Hs.525529 NM_014505 ENSG00000135643 KCNMB4 - potassium calcium-activated channel subfamily M regulatory beta subunit 4 protein-coding 314-116 chr12 10273331 10273533 + 2 NA intron (NM_001351060, intron 2 of 8) intron (NM_001351060, intron 2 of 8) -31014 NM_001114396 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 213-177 chr3 59074465 59074634 + 2 NA Intergenic L2a|LINE|L2 -24517 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 617-107 chr5 53356884 53357345 + 2 NA Intergenic Intergenic -123515 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 244-364 chr8 78109087 78109268 + 2 NA Intergenic MLT1M|LTR|ERVL-MaLR -407163 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 439-160 chr20 24338971 24339265 + 2 NA Intergenic Intergenic -130081 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 441-225 chr6 68901290 68901606 + 2 NA intron (NM_001704, intron 3 of 31) MLT1F2|LTR|ERVL-MaLR 266166 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 366-229 chr2 153372694 153372911 + 2 NA Intergenic HAL1|LINE|L1 105960 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 310-577 chrX 124757690 124757857 + 2 NA intron (NM_014253, intron 3 of 30) intron (NM_014253, intron 3 of 30) 206044 NM_001163278 10178 Hs.23796 NM_014253 ENSG00000009694 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1|ten-1 teneurin transmembrane protein 1 protein-coding 346-213 chr19 7228476 7228694 + 2 NA intron (NM_001079817, intron 2 of 20) L1M5|LINE|L1 65829 NM_000208 3643 Hs.465744 NM_000208 ENSG00000171105 INSR CD220|HHF5 insulin receptor protein-coding 161-37 chr17 71542003 71542093 + 2 NA Intergenic Intergenic -339869 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 567-95 chr2 229738795 229739174 + 2 NA Intergenic L1M4|LINE|L1 -24429 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 701-10 chr10 67571048 67571644 + 2 NA intron (NM_001127384, intron 3 of 17) intron (NM_001127384, intron 3 of 17) 94314 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 393-344 chr8 20947205 20947508 + 2 NA Intergenic L1ME2|LINE|L1 -6277 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 322-253 chr2 83723163 83723477 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 200506 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 152-17 chr11 83044501 83044625 + 2 NA intron (NM_014488, intron 1 of 5) intron (NM_014488, intron 1 of 5) -2965 NR_033347 100379250 Hs.725115 NR_033347 ENSG00000207221 SNORA70E U70E small nucleolar RNA, H/ACA box 70E snoRNA 324-532 chr8 89802568 89802846 + 2 NA Intergenic Intergenic 44891 NM_003821 8767 Hs.103755 NM_003821 ENSG00000104312 RIPK2 CARD3|CARDIAK|CCK|GIG30|RICK|RIP2 receptor interacting serine/threonine kinase 2 protein-coding 289-284 chr22 39801888 39802136 + 2 NA intron (NM_152512, intron 5 of 6) intron (NM_152512, intron 5 of 6) 91748 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 469-215 chr5 34646907 34647353 + 2 NA Intergenic AluSx1|SINE|Alu -9198 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 425-292 chr8 6670100 6670514 + 2 NA intron (NR_125386, intron 1 of 4) intron (NR_125386, intron 1 of 4) 37902 NR_125386 100507530 Hs.490892 NR_125386 MCPH1-AS1 - MCPH1 antisense RNA 1 ncRNA 370-406 chr7 4561754 4562053 + 2 NA Intergenic Intergenic -120392 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 327-360 chr4 53092617 53092837 + 2 NA intron (NM_152540, intron 5 of 8) L1MD2|LINE|L1 230410 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 544-220 chr8 35578131 35578535 + 2 NA intron (NM_001322818, intron 3 of 16) intron (NM_001322818, intron 3 of 16) 33941 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 326-179 chr15 93579515 93579775 + 2 NA Intergenic L1MEc|LINE|L1 -276915 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 187-76 chr2 13570463 13570585 + 2 NA Intergenic Intergenic -563511 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 507-61 chr12 758142 758647 + 2 NA intron (NM_001184985, intron 1 of 27) AluYb8|SINE|Alu 5471 NM_213655 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 347-186 chr18 72564608 72564892 + 2 NA Intergenic L1MA6|LINE|L1 -20408 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 280-333 chr5 121391819 121391997 + 2 NA Intergenic Intergenic 69358 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 389-79 chr12 48602080 48602459 + 2 NA Intergenic LTR10B1|LTR|ERV1 -32223 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 253-270 chr3 118114563 118114801 + 2 NA Intergenic Intergenic -423757 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 272-430 chr7 107776760 107776960 + 2 NA intron (NM_000111, intron 13 of 20) L2c|LINE|L2 26373 NM_000111 1811 Hs.1650 NM_000111 ENSG00000091138 SLC26A3 CLD|DRA solute carrier family 26 member 3 protein-coding 204-236 chr5 107139163 107139324 + 2 NA Intergenic L1MD|LINE|L1 -128229 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 275-155 chr18 7284266 7284420 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 53239 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 336-326 chr20 43759402 43759651 + 2 NA Intergenic AluSz|SINE|Alu -32524 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 433-121 chr19 7083928 7084196 + 2 NA 3' UTR (NM_001044387, exon 8 of 8) 3' UTR (NM_001044387, exon 8 of 8) 14359 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 316-457 chr5 126321025 126321239 + 2 NA Intergenic L1PA14|LINE|L1 -35957 NR_105040 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 408-275 chr5 116264702 116264989 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 9102 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 148-17 chr11 132013683 132013788 + 2 NA intron (NR_147849, intron 2 of 6) L1MB8|LINE|L1 102917 NM_001144059 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 604-34 chr12 9136461 9136838 + 2 NA Intergenic L1MB1|LINE|L1 -20420 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 263-282 chr4 43284277 43284466 + 2 NA Intergenic MIR|SINE|MIR 208172 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 283-452 chr8 139098208 139098441 + 2 NA Intergenic Intergenic -184283 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 346-281 chr20 60301301 60301603 + 2 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -7022 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 457-2 chr1 29813413 29813814 + 2 NA Intergenic L1ME1|LINE|L1 223999 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 429-17 chr1 169716415 169716672 + 2 NA Intergenic L2|LINE|L2 -4923 NM_000655 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 238-216 chr21 30739170 30739368 + 2 NA Intergenic L3|LINE|CR1 7990 NM_181617 337978 Hs.553699 NM_181617 ENSG00000187026 KRTAP21-2 KAP21.2 keratin associated protein 21-2 protein-coding 389-402 chrX 145055013 145055233 + 2 NA Intergenic Intergenic -192380 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 246-38 chr10 41860903 41861074 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 507057 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 650-117 chr7 41537479 41537913 + 2 NA Intergenic Intergenic -156223 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 370-392 chr6 55022188 55022516 + 2 NA Intergenic L1MA9|LINE|L1 -84108 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 336-302 chr2 185804807 185805087 + 2 NA exon (NM_173651, exon 17 of 23) exon (NM_173651, exon 17 of 23) -4796 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 353-541 chr8 137047970 137048260 + 2 NA Intergenic Intergenic 365473 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 192-205 chr8 81341186 81341376 + 2 NA Intergenic Intergenic 60745 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 230-405 chrX 107457019 107457195 + 2 NA Intergenic L2a|LINE|L2 -65343 NM_032428 84443 Hs.496546 NM_032428 ENSG00000147234 FRMPD3 - FERM and PDZ domain containing 3 protein-coding 191-180 chr5 145460632 145460741 + 2 NA Intergenic MIR|SINE|MIR 374656 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 341-273 chr2 166629052 166629374 + 2 NA Intergenic L1PREC2|LINE|L1 -142242 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 235-371 chr8 122952166 122952322 + 2 NA exon (NM_014943, exon 3 of 4) exon (NM_014943, exon 3 of 4) 73528 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 936-11 chr16 64175024 64175787 + 2 NA Intergenic L2c|LINE|L2 946658 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 295-459 chr8 8615521 8615772 + 2 NA Intergenic Intergenic -86291 NM_194284 137075 Hs.183617 NM_194284 ENSG00000253958 CLDN23 CLDNL|hCG1646163 claudin 23 protein-coding 1013-6 chr2 12224730 12225414 + 2 NA intron (NR_110196, intron 3 of 5) intron (NR_110196, intron 3 of 5) 25942 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 131-8 chr10 32960838 32960919 + 2 NA Intergenic Intergenic -2648 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 258-69 chr11 75943268 75943428 + 2 NA intron (NM_003369, intron 6 of 14) L1M5|LINE|L1 128138 NM_003369 7405 Hs.202470 NM_003369 ENSG00000198382 UVRAG DHTX|VPS38|p63 UV radiation resistance associated protein-coding 673-24 chr11 134522624 134523206 + 2 NA Intergenic Intergenic 86433 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 310-58 chr10 106293295 106293519 + 2 NA Intergenic Intergenic 153242 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 276-44 chr10 20089595 20089824 + 2 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 273277 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 300-293 chr3 149467929 149468223 + 2 NA Intergenic Intergenic -6621 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 377-231 chr2 189720631 189720864 + 2 NA exon (NM_144708, exon 12 of 23) exon (NM_144708, exon 12 of 23) -42033 NR_102429 101409258 Hs.738558 NR_102429 OSGEPL1-AS1 - OSGEPL1 antisense RNA 1 ncRNA 590-128 chr5 7403377 7403767 + 2 NA intron (NM_020546, intron 1 of 24) L1ME3F|LINE|L1 7434 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 254-224 chr20 43077555 43077776 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 108922 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 676-23 chr11 122058562 122059053 + 2 NA intron (NR_137178, intron 3 of 4) L1MEc|LINE|L1 41037 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 408-307 chr7 685579 685914 + 2 NA intron (NM_001164760, intron 2 of 10) HAL1ME|LINE|L1 26778 NM_002735 5575 Hs.520851 NM_002735 ENSG00000188191 PRKAR1B PRKAR1 protein kinase cAMP-dependent type I regulatory subunit beta protein-coding 592-168 chr8 35694519 35695017 + 2 NA intron (NM_001322818, intron 7 of 16) AluJr|SINE|Alu 15552 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 220-178 chr2 116547376 116547555 + 2 NA Intergenic L1MEf|LINE|L1 1203650 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 298-53 chr10 76465024 76465211 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -422927 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 232-48 chr10 122745151 122745370 + 2 NA Intergenic AluSz|SINE|Alu -11434 NR_003570 375940 Hs.650695 NM_198577 ENSG00000176584 DMBT1P1 - deleted in malignant brain tumors 1 pseudogene 1 pseudo 247-47 chr10 106819661 106819828 + 2 NA intron (NM_001206569, intron 3 of 25) intron (NM_001206569, intron 3 of 25) 344962 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 382-283 chr4 5517358 5517637 + 2 NA Intergenic MER31-int|LTR|ERV1 -7072 NR_126519 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 731-13 chr10 76524960 76525407 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -362861 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 444-65 chr14 31759373 31759724 + 2 NA intron (NM_001201574, intron 1 of 5) L1MA8|LINE|L1 44979 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 531-116 chr2 115409426 115409808 + 2 NA intron (NM_001321912, intron 4 of 25) L1PB1|LINE|L1 65802 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 381-401 chr9 8293125 8293364 + 2 NA Intergenic Intergenic 440702 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 404-239 chr4 130760961 130761310 + 2 NA Intergenic Intergenic 384774 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 463-12 chr1 78328549 78328888 + 2 NA intron (NR_027310, intron 3 of 5) MER4D1|LTR|ERV1 99119 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 445-243 chr6 146168846 146169284 + 2 NA intron (NM_001278065, intron 3 of 9) L1ME1|LINE|L1 139867 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 590-149 chr6 86760144 86760533 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -177190 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 505-53 chr11 103559678 103560047 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -290044 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 298-404 chr6 91809370 91809540 + 2 NA Intergenic Intergenic -119027 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 136-52 chr20 38050982 38051056 + 2 NA intron (NM_021215, intron 3 of 6) intron (NM_021215, intron 3 of 6) 17273 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 285-244 chr20 47944478 47944730 + 2 NA Intergenic L2a|LINE|L2 -38622 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 290-121 chr13 69986759 69987032 + 2 NA intron (NM_020866, intron 1 of 10) intron (NM_020866, intron 1 of 10) -120318 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 290-286 chr3 88101844 88102018 + 2 NA intron (NM_001350135, intron 2 of 6) L1MB7|LINE|L1 42676 NM_001366097 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 284-369 chr7 11495987 11496168 + 2 NA intron (NM_015204, intron 6 of 26) intron (NM_015204, intron 6 of 26) 336121 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 206-209 chr5 78093216 78093368 + 2 NA intron (NM_003664, intron 21 of 26) AluJb|SINE|Alu 135045 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 266-362 chr6 54112454 54112601 + 2 NA intron (NM_001281747, intron 1 of 13) intron (NM_001281747, intron 1 of 13) 1084 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 329-484 chr6 21409625 21409806 + 2 NA Intergenic Intergenic 102177 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 233-45 chr10 81990444 81990635 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 112852 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 229-396 chr8 112505856 112506035 + 2 NA intron (NM_001363185, intron 27 of 66) intron (NM_001363185, intron 27 of 66) -137548 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 275-391 chr9 134247856 134248101 + 2 NA Intergenic L1MEg|LINE|L1 47419 NR_146518 105376310 Hs.573484 NR_146518 ENSG00000223729 LINC02247 - long intergenic non-protein coding RNA 2247 ncRNA 327-531 chr9 115104658 115104909 + 2 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 13374 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 539-206 chr8 89080932 89081281 + 2 NA Intergenic Intergenic 676605 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 259-225 chr2 239799476 239799609 + 2 NA intron (NR_037808, intron 2 of 2) intron (NR_037808, intron 2 of 2) 36682 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 152-30 chr15 70346741 70346844 + 2 NA Intergenic L1ME3E|LINE|L1 159136 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 543-238 chr7 123990590 123991061 + 2 NA Intergenic Intergenic -3797 NR_133947 105375483 Hs.435972 NR_133947 ENSG00000241345 LOC105375483 - uncharacterized LOC105375483 ncRNA 261-203 chr2 186880585 186880769 + 2 NA Intergenic L1MA8|LINE|L1 -31507 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 211-165 chr20 40043386 40043586 + 2 NA Intergenic Intergenic 39025 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 238-256 chr4 33359364 33359550 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 680436 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 353-230 chr2 3881715 3882030 + 2 NA Intergenic Intergenic 92160 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 363-47 chr10 41782748 41783082 + 2 NA Intergenic ALR/Alpha|Satellite|centr 585130 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 268-41 chr10 38118047 38118261 + 2 NA exon (NM_001324251, exon 8 of 8) exon (NM_001324251, exon 8 of 8) 23817 NM_001324250 7587 Hs.292575 NM_003421 ENSG00000075407 ZNF37A KOX21|ZNF37 zinc finger protein 37A protein-coding 237-404 chr9 32726312 32726525 + 2 NA Intergenic Intergenic -57122 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 396-49 chr10 54978657 54978980 + 2 NA intron (NM_001354404, intron 3 of 34) MER34C_|LTR|ERV1 -177527 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 276-408 chr6 84022931 84023166 + 2 NA Intergenic Intergenic -10724 NM_138409 112609 Hs.370055 NM_138409 ENSG00000135324 MRAP2 C6orf117|bA51G5.2 melanocortin 2 receptor accessory protein 2 protein-coding 263-361 chr6 78714922 78715161 + 2 NA Intergenic Intergenic -152510 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 320-506 chr7 25974579 25974751 + 2 NA Intergenic Intergenic -24679 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 306-421 chr6 8541506 8541712 + 2 NA intron (NR_038980, intron 2 of 4) L1MCc|LINE|L1 105986 NR_038979 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 400-226 chr3 127198275 127198591 + 2 NA TTS (NM_001007534) TTS (NM_001007534) 5302 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 285-5 chr1 55766189 55766391 + 2 NA Intergenic MLT2B4|LTR|ERVL 178673 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 355-525 chr8 140496785 140497094 + 2 NA Intergenic Intergenic -14359 NR_023360 54108 Hs.279704 NM_017444 ENSG00000104472 CHRAC1 CHARC1|CHARC15|CHRAC-1|CHRAC-15|CHRAC15|YCL1 chromatin accessibility complex subunit 1 protein-coding 524-120 chr2 132550185 132550535 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 116649 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 534-18 chr1 210902603 210902946 + 2 NA intron (NM_002238, intron 7 of 10) L2c|LINE|L2 230600 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 336-351 chr22 30177956 30178228 + 2 NA Intergenic Intergenic -61102 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 430-37 chr10 82452185 82452483 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -219414 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 448-292 chr9 2343419 2343712 + 2 NA Intergenic Intergenic 185109 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 382-261 chr3 29260707 29260919 + 2 NA Intergenic L2a|LINE|L2 20126 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 420-237 chr5 86961847 86962220 + 2 NA Intergenic MIR|SINE|MIR 152921 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 378-18 chr1 108095615 108095938 + 2 NA Intergenic L2b|LINE|L2 97059 NM_213651 29957 Hs.656870 NM_013386 ENSG00000085491 SLC25A24 APC1|SCAMC-1|SCAMC1 solute carrier family 25 member 24 protein-coding 259-49 chr10 61247992 61248133 + 2 NA Intergenic Intergenic -204577 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 232-45 chr10 111501423 111501648 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 387244 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 147-22 chr14 52530538 52530632 + 2 NA intron (NM_020784, intron 6 of 20) (TA)n|Simple_repeat|Simple_repeat 21920 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 260-310 chr4 64772134 64772358 + 2 NA Intergenic Intergenic 232254 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 285-238 chr20 6751213 6751463 + 2 NA Intergenic L1M5|LINE|L1 -15202 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 328-175 chr15 57659487 57659728 + 2 NA intron (NR_104367, intron 11 of 15) L1MC5|LINE|L1 -46914 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 256-373 chr6 163300527 163300732 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 23844 NR_028390 285796 Hs.668693 NR_028390 ENSG00000281692 PACRG-AS1 - PACRG antisense RNA 1 ncRNA 289-304 chr3 89578440 89578687 + 2 NA Intergenic Intergenic 470942 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 423-132 chr2 66190806 66191096 + 2 NA Intergenic AluSg7|SINE|Alu 167377 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 903-37 chr8 46363862 46364432 + 2 NA Intergenic ALR/Alpha|Satellite|centr 253496 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 216-179 chr2 132611992 132612181 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 58119 NM_001321235 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 210-201 chr4 76312814 76312981 + 2 NA TTS (NM_001042784) TTS (NM_001042784) 6871 NM_003943 8987 Hs.109590 NM_003943 ENSG00000118804 STBD1 GENEX3414|GENX-3414 starch binding domain 1 protein-coding 401-132 chr18 2869949 2870189 + 2 NA intron (NM_032048, intron 2 of 7) AluJb|SINE|Alu 23063 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 488-114 chr18 71017631 71018003 + 2 NA Intergenic L1M5|LINE|L1 -366863 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 387-315 chr6 92750846 92751163 + 2 NA Intergenic L1M2a|LINE|L1 668555 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 248-112 chr14 55897110 55897291 + 2 NA Intergenic Intergenic -100526 NR_026797 645687 Hs.569345 NR_026796 ENSG00000258791 LINC00520 C14orf34 long intergenic non-protein coding RNA 520 ncRNA 277-192 chr2 60119284 60119456 + 2 NA Intergenic L1MC4|LINE|L1 263666 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 313-140 chr14 43549497 43549749 + 2 NA Intergenic L1MB7|LINE|L1 957660 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 363-300 chr3 147919964 147920198 + 2 NA Intergenic Intergenic -158078 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 325-450 chr5 87500817 87501049 + 2 NA Intergenic Intergenic -87900 NM_001363539 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 222-344 chr7 53812839 53813013 + 2 NA promoter-TSS (NR_038371) promoter-TSS (NR_038371) -995 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 432-113 chr2 5403407 5403814 + 2 NA Intergenic Intergenic 287508 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 332-553 chr8 131067470 131067748 + 2 NA Intergenic MIR|SINE|MIR -26700 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 478-200 chr3 178622927 178623334 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 64280 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 156-11 chr10 64910982 64911112 + 2 NA intron (NR_134456, intron 1 of 1) intron (NR_134456, intron 1 of 1) 13471 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 301-30 chr1 239475997 239476249 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 89555 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 295-282 chr3 8213777 8214065 + 2 NA Intergenic L2b|LINE|L2 -197614 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 470-185 chr3 178465320 178465643 + 2 NA Intergenic MIRb|SINE|MIR 46280 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 185-80 chr18 3168705 3168835 + 2 NA intron (NM_019856, intron 9 of 36) intron (NM_019856, intron 9 of 36) 51198 NM_019856 8736 Hs.464469 NM_003803 ENSG00000101605 MYOM1 SKELEMIN myomesin 1 protein-coding 355-149 chr14 30672235 30672469 + 2 NA intron (NM_016106, intron 11 of 24) intron (NM_016106, intron 11 of 24) 50033 NM_016106 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 291-336 chr4 172661505 172661681 + 2 NA intron (NR_125894, intron 2 of 2) intron (NR_125894, intron 2 of 2) 27324 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 381-70 chr11 20358895 20359247 + 2 NA Intergenic Intergenic -4614 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 819-30 chr5 179002547 179003108 + 2 NA Intergenic L1ME3B|LINE|L1 -7507 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 503-117 chr16 75658726 75659116 + 2 NA Intergenic L1M4b|LINE|L1 11148 NM_018975 54386 Hs.301419 NM_018975 ENSG00000166848 TERF2IP DRIP5|RAP1 TERF2 interacting protein protein-coding 205-56 chr11 97211769 97211929 + 2 NA Intergenic L1ME2|LINE|L1 703424 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 521-31 chr10 71043216 71043554 + 2 NA Intergenic Intergenic 104332 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 324-345 chr3 62122785 62123026 + 2 NA intron (NM_002841, intron 5 of 29) intron (NM_002841, intron 5 of 29) 196042 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 205-22 chr1 229624995 229625163 + 2 NA intron (NM_001025247, intron 1 of 3) intron (NM_001025247, intron 1 of 3) 968 NM_014409 27097 Hs.270621 NM_014409 ENSG00000135801 TAF5L PAF65B TATA-box binding protein associated factor 5 like protein-coding 288-482 chrX 101908125 101908366 + 2 NA intron (NM_001282401, intron 1 of 8) intron (NM_001282401, intron 1 of 8) 23782 NM_001282400 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 255-370 chr6 156070127 156070326 + 2 NA Intergenic Intergenic 123429 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 644-108 chr8 130450676 130451167 + 2 NA Intergenic Intergenic -7247 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 385-13 chr1 194322015 194322314 + 2 NA Intergenic Intergenic 1017419 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 298-320 chr4 39550597 39550858 + 2 NA 3' UTR (NM_001317897, exon 5 of 5) 3' UTR (NM_001317897, exon 5 of 5) 22888 NR_047679 100885776 Hs.640769 NR_047679 ENSG00000249348 UGDH-AS1 - UGDH antisense RNA 1 ncRNA 307-481 chr8 78319261 78319535 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -196942 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 317-198 chr18 45406448 45406709 + 2 NA intron (NM_001371319, intron 4 of 23) Tigger1|DNA|TcMar-Tigger 100458 NR_110899 101927980 Hs.591058 NR_110899 SLC14A2-AS1 - SLC14A2 antisense RNA 1 ncRNA 207-257 chr6 65112347 65112543 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -188973 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 232-113 chr15 60703822 60703978 + 2 NA intron (NM_134261, intron 1 of 10) A-rich|Low_complexity|Low_complexity 22331 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 273-8 chr1 49256084 49256322 + 2 NA intron (NR_136623, intron 2 of 12) L1PA13|LINE|L1 -1208 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 357-462 chr8 134314663 134314934 + 2 NA Intergenic MLT2C1|LTR|ERVL -283273 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 299-11 chr1 68840402 68840677 + 2 NA Intergenic L1PB1|LINE|L1 -215359 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 190-74 chr18 3569274 3569434 + 2 NA intron (NM_001242762, intron 5 of 9) L1M5|LINE|L1 -24760 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 288-45 chr10 38835581 38835757 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 139073 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 300-71 chr11 85514708 85514908 + 2 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 112462 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 772-20 chr14 83999237 83999807 + 2 NA Intergenic Intergenic -1272410 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 504-149 chr20 22128402 22128893 + 2 NA Intergenic L1MA9|LINE|L1 74557 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 351-411 chr6 37323875 37324138 + 2 NA intron (NR_130108, intron 12 of 12) intron (NR_130108, intron 12 of 12) -29977 NM_183078 9025 Hs.485278 NM_003958 ENSG00000112130 RNF8 hRNF8 ring finger protein 8 protein-coding 186-68 chr18 47483789 47483933 + 2 NA intron (NR_147192, intron 1 of 2) intron (NR_147192, intron 1 of 2) 103365 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 542-190 chr6 62937056 62937574 + 2 NA Intergenic L1MA3|LINE|L1 382662 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 293-358 chr5 165062938 165063140 + 2 NA Intergenic Intergenic 592760 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 347-560 chrX 64445176 64445507 + 2 NA Intergenic L2a|LINE|L2 -49889 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 571-75 chr2 72765763 72766139 + 2 NA intron (NR_135774, intron 1 of 19) L1MEg|LINE|L1 60082 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 559-115 chr22 30463695 30464223 + 2 NA intron (NM_174975, intron 8 of 11) L1ME4a|LINE|L1 8088 NM_001257379 266629 Hs.505601 NM_174975 ENSG00000100012 SEC14L3 TAP2 SEC14 like lipid binding 3 protein-coding 268-76 chr12 14906306 14906495 + 2 NA Intergenic MIRc|SINE|MIR -20546 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 287-425 chr8 141586051 141586282 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -78936 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 251-278 chr4 161971553 161971730 + 2 NA intron (NM_001128428, intron 3 of 14) intron (NM_001128428, intron 3 of 14) -51092 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 385-209 chr20 42704285 42704589 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 18954 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 284-54 chr10 90388516 90388752 + 2 NA Intergenic Intergenic 152171 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 113-42 chr6 15354262 15354343 + 2 NA intron (NM_001267040, intron 1 of 17) MLT1D|LTR|ERVL-MaLR 105447 NM_001267040 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 517-275 chr8 123627164 123627618 + 2 NA Intergenic L1M5|LINE|L1 26410 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 545-194 chr5 128850012 128850425 + 2 NA Intergenic L1MA1|LINE|L1 -114909 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 466-141 chr2 127223618 127223927 + 2 NA Intergenic Intergenic -3473 NM_001367501 339761 Hs.407639 NM_001001665 ENSG00000186684 CYP27C1 - cytochrome P450 family 27 subfamily C member 1 protein-coding 260-158 chr16 6354756 6354965 + 2 NA intron (NM_018723, intron 2 of 15) (TGAA)n|Simple_repeat|Simple_repeat 335157 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 235-311 chr6 76939961 76940134 + 2 NA Intergenic L1MD1|LINE|L1 -346424 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 250-158 chr17 33464301 33464510 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 69355 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 340-410 chr4 97551314 97551623 + 2 NA Intergenic Intergenic 184542 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 333-255 chr2 109352018 109352310 + 2 NA intron (NM_001099289, intron 2 of 9) intron (NM_001099289, intron 2 of 9) -38539 NR_036224 100423027 NR_036224 ENSG00000265965 MIR4266 - microRNA 4266 ncRNA 159-35 chr18 7423267 7423368 + 2 NA Intergenic Intergenic 37689 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 288-102 chr13 92305341 92305550 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 46762 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 212-193 chr21 27354470 27354669 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -367810 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 318-316 chr20 38692328 38692502 + 2 NA Intergenic Intergenic -32071 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 241-225 chr21 23784043 23784270 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -399321 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 486-163 chr2 213406306 213406643 + 2 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 122010 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 291-196 chr19 37608174 37608403 + 2 NA intron (NM_001172225, intron 4 of 4) L1MC1|LINE|L1 13412 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 237-168 chr2 37502661 37502875 + 2 NA Intergenic Intergenic 158138 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 258-371 chr7 69290883 69291063 + 2 NA Intergenic L1MC5|LINE|L1 306651 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 416-188 chr2 183009905 183010217 + 2 NA intron (NM_013436, intron 2 of 30) intron (NM_013436, intron 2 of 30) 28396 NM_013436 10787 Hs.603732 NM_013436 ENSG00000061676 NCKAP1 HEM2|NAP1|NAP125|p125Nap1 NCK associated protein 1 protein-coding 298-27 chr1 219424002 219424238 + 2 NA Intergenic Intergenic 133204 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 406-148 chr2 106896283 106896566 + 2 NA Intergenic Intergenic -9315 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 1020-12 chr20 9644901 9645562 + 2 NA intron (NM_020341, intron 3 of 10) L1ME4b|LINE|L1 -130233 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 231-390 chrX 148598834 148599025 + 2 NA intron (NM_001169124, intron 1 of 19) intron (NM_001169124, intron 1 of 19) 98312 NM_001169124 2334 Hs.496911 NM_002025 ENSG00000155966 AFF2 FMR2|FMR2P|FRAXE|MRX2|OX19 AF4/FMR2 family member 2 protein-coding 292-473 chrX 36314685 36314857 + 2 NA intron (NM_001304548, intron 56 of 63) intron (NM_001304548, intron 56 of 63) 125521 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 409-121 chr18 64199661 64200019 + 2 NA intron (NR_033881, intron 2 of 9) L2b|LINE|L2 -50814 NR_027245 221241 Hs.567778 NM_152728 ENSG00000179676 LINC00305 C18orf20|HsT1235|NCRNA00305 long intergenic non-protein coding RNA 305 ncRNA 289-260 chr20 15833362 15833624 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 89821 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 201-204 chr5 110170731 110170899 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 287633 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 455-88 chr16 54465063 54465500 + 2 NA Intergenic MER51A|LTR|ERV1 -94582 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 351-369 chr5 11637814 11637994 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -48838 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 291-487 chr9 30952603 30952857 + 2 NA Intergenic MIRb|SINE|MIR 428760 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 429-253 chr6 61192844 61193116 + 2 NA Intergenic MER52A|LTR|ERV1 -381150 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 492-275 chr9 5291401 5291837 + 2 NA Intergenic Intergenic 12609 NM_001329191 6019 Hs.127032 NM_005059 ENSG00000107014 RLN2 H2|H2-RLX|RLXH2|bA12D24.1.1|bA12D24.1.2 relaxin 2 protein-coding 306-318 chr3 96092841 96093131 + 2 NA Intergenic L1PA7|LINE|L1 -266978 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 422-181 chr3 46831134 46831413 + 2 NA intron (NR_148409, intron 2 of 2) L2c|LINE|L2 2550 NR_148409 339906 Hs.585127 NM_182702 ENSG00000178055 PRSS42P PRSS42|TESSP2 serine protease 42, pseudogene pseudo 331-225 chr18 66216294 66216554 + 2 NA Intergenic Intergenic 387666 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 365-113 chr13 84903894 84904185 + 2 NA Intergenic Intergenic 120385 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 254-210 chr2 210713919 210714129 + 2 NA Intergenic Intergenic 96453 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 325-567 chr9 2268419 2268672 + 2 NA Intergenic Intergenic 110089 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 396-165 chr2 65676041 65676323 + 2 NA Intergenic Intergenic -243583 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 472-137 chr18 76069218 76069676 + 2 NA Intergenic L1MA7|LINE|L1 -53551 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 325-79 chr10 100424503 100424677 + 2 NA Intergenic AluSx1|SINE|Alu -38419 NM_003393 7479 Hs.421281 NM_003393 ENSG00000075290 WNT8B - Wnt family member 8B protein-coding 387-11 chr1 157836427 157836687 + 2 NA intron (NM_001347698, intron 2 of 5) MIR3|SINE|MIR 5251 NM_001347698 922 Hs.134035 NM_005894 ENSG00000073754 CD5L AIM|API6|CT-2|PRO229|SP-ALPHA|Spalpha|hAIM CD5 molecule like protein-coding 293-88 chr12 78265774 78265926 + 2 NA Intergenic Intergenic 93896 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 536-145 chr20 8160225 8160604 + 2 NA intron (NM_182734, intron 2 of 32) THE1B|LTR|ERVL-MaLR 28148 NM_015192 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 179-47 chr2 75765203 75765349 + 2 NA Intergenic Intergenic -54361 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 230-329 chr6 150155262 150155383 + 2 NA intron (NM_030949, intron 1 of 3) intron (NM_030949, intron 1 of 3) 12278 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 281-369 chr5 116275429 116275698 + 2 NA intron (NM_001308080, intron 5 of 6) L2c|LINE|L2 19820 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 173-44 chr16 22028106 22028214 + 2 NA intron (NM_001164579, intron 1 of 2) intron (NM_001164579, intron 1 of 2) 20049 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 MOSMO ATTHOG|BC030336|C16orf52 modulator of smoothened protein-coding 316-167 chr14 52247309 52247595 + 2 NA Intergenic Intergenic -20246 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 169-56 chr2 14469020 14469169 + 2 NA Intergenic L1MA8|LINE|L1 -68136 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 324-162 chr14 66236767 66236976 + 2 NA Intergenic Intergenic -249500 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 591-62 chr18 77819536 77820023 + 2 NA Intergenic AluSx1|SINE|Alu 173948 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 294-418 chr6 136399081 136399343 + 2 NA intron (NM_001198611, intron 3 of 16) MIR3|SINE|MIR 67663 NM_001198615 9053 Hs.486548 NM_003980 ENSG00000135525 MAP7 E-MAP-115|EMAP115 microtubule associated protein 7 protein-coding 474-27 chr10 23613797 23614250 + 2 NA Intergenic Intergenic -80704 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 385-213 chr20 46056696 46056945 + 2 NA intron (NM_020708, intron 23 of 25) intron (NM_020708, intron 23 of 25) 27605 NM_020708 57468 Hs.21413 NM_020708 ENSG00000124140 SLC12A5 EIEE34|EIG14|KCC2|hKCC2 solute carrier family 12 member 5 protein-coding 297-417 chr6 131067827 131068098 + 2 NA Intergenic Intergenic -4640 NM_001350307 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 356-221 chr19 50058719 50058966 + 2 NA intron (NR_138096, intron 1 of 4) intron (NR_138096, intron 1 of 4) 8253 NR_027257 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 514-162 chr2 239680379 239680733 + 2 NA Intergenic L1MEg|LINE|L1 -82304 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 534-43 chr11 38122865 38123298 + 2 NA Intergenic Intergenic 184480 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 454-233 chr4 63691059 63691441 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 718200 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 253-186 chr2 62729546 62729760 + 2 NA intron (NM_001142615, intron 2 of 22) (ATATT)n|Simple_repeat|Simple_repeat 22756 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 276-13 chr1 95602182 95602415 + 2 NA Intergenic L1M5|LINE|L1 92182 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 248-342 chr6 45774970 45775178 + 2 NA Intergenic Intergenic 162523 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 287-212 chr2 178609623 178609784 + 2 NA exon (NM_133432, exon 101 of 192) exon (NM_133432, exon 101 of 192) 86512 NR_038271 100506866 Hs.710694 NR_038271 ENSG00000237298 TTN-AS1 - TTN antisense RNA 1 ncRNA 128-58 chr6 71799769 71799872 + 2 NA Intergenic L1PB1|LINE|L1 -86883 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 273-74 chr11 37515378 37515634 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -423095 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 290-413 chr7 34591024 34591277 + 2 NA intron (NR_033664, intron 2 of 4) intron (NR_033664, intron 2 of 4) -67068 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 533-145 chr3 187925036 187925410 + 2 NA Intergenic Intergenic 51184 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 440-58 chr13 34810420 34810815 + 2 NA Intergenic Intergenic -131670 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 464-204 chr5 103434745 103435078 + 2 NA Intergenic FLAM_C|SINE|Alu 107074 NR_104670 102467212 Hs.641885 NR_104670 ENSG00000248757 LINC02115 - long intergenic non-protein coding RNA 2115 ncRNA 352-298 chr21 30888139 30888387 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -6683 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 286-145 chr16 7747591 7747740 + 2 NA Intergenic Intergenic 414820 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 333-259 chr2 117288846 117289046 + 2 NA Intergenic L1MA4|LINE|L1 -525745 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 128-26 chr18 30715121 30715203 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 327580 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 423-17 chr1 169576616 169576906 + 2 NA intron (NM_000130, intron 2 of 24) intron (NM_000130, intron 2 of 24) 9770 NM_000130 2153 Hs.30054 NM_000130 ENSG00000198734 F5 FVL|PCCF|RPRGL1|THPH2 coagulation factor V protein-coding 282-207 chr2 70433116 70433347 + 2 NA Intergenic L1MB7|LINE|L1 48409 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 302-357 chr5 126136565 126136807 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -42891 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 299-503 chrX 100456273 100456479 + 2 NA Intergenic L1PA15|LINE|L1 -46103 NM_001105243 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 182-93 chr2 85366233 85366380 + 2 NA intron (NR_138132, intron 6 of 12) intron (NR_138132, intron 6 of 12) 11537 NM_001135021 84173 Hs.269990 NM_032213 ENSG00000115459 ELMOD3 DFNB88|LST3|RBED1|RBM29 ELMO domain containing 3 protein-coding 570-47 chr11 124982043 124982430 + 2 NA intron (NM_025004, intron 6 of 15) L1PA15|LINE|L1 28034 NM_025004 80071 Hs.287555 NM_025004 ENSG00000149548 CCDC15 - coiled-coil domain containing 15 protein-coding 221-280 chr7 43254201 43254360 + 2 NA intron (NM_001287059, intron 2 of 27) intron (NM_001287059, intron 2 of 27) 103385 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 374-137 chr17 9608425 9608685 + 2 NA intron (NM_001080556, intron 6 of 12) intron (NM_001080556, intron 6 of 12) 31913 NM_145054 146845 Hs.232270 NM_145054 ENSG00000166596 CFAP52 WDR16|WDRPUH cilia and flagella associated protein 52 protein-coding 380-86 chr12 15456649 15456857 + 2 NA intron (NM_030667, intron 1 of 26) L1MB1|LINE|L1 -89858 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 345-488 chr7 26948194 26948436 + 2 NA Intergenic Intergenic -83725 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 822-22 chr18 1728304 1728864 + 2 NA Intergenic Intergenic -368955 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 332-140 chr13 56627737 56628029 + 2 NA Intergenic L1PREC2|LINE|L1 -513035 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 330-144 chr13 103075968 103076203 + 2 NA Intergenic Intergenic -9668 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 213-272 chr8 47207312 47207475 + 2 NA Intergenic Intergenic 18086 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 330-562 chrX 35705692 35705884 + 2 NA Intergenic MIR|SINE|MIR -92554 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 334-362 chr3 118333551 118333828 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -308079 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 339-235 chr19 52133116 52133420 + 2 NA intron (NM_178523, intron 1 of 3) intron (NM_178523, intron 1 of 3) 6670 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 320-377 chr4 28755735 28755904 + 2 NA Intergenic Intergenic -63763 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 238-171 chr2 58397724 58397914 + 2 NA Intergenic Intergenic 121942 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 370-440 chr8 90904654 90904877 + 2 NA intron (NM_022351, intron 5 of 12) intron (NM_022351, intron 5 of 12) 80312 NM_001363275 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 556-186 chr6 17044002 17044408 + 2 NA Intergenic HAL1M8|LINE|L1 -58053 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 484-147 chr2 201330721 201331133 + 2 NA intron (NR_110620, intron 6 of 13) intron (NR_110620, intron 6 of 13) 26418 NR_110620 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 291-382 chr6 64275947 64276190 + 2 NA intron (NM_001292009, intron 30 of 43) intron (NM_001292009, intron 30 of 43) 469232 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 166-105 chr6 54052426 54052522 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) -4880 NR_046710 100873951 NR_046710 MLIP-AS1 - MLIP antisense RNA 1 ncRNA 328-27 chr1 184769743 184769914 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -14970 NR_135118 80267 Hs.523811 NM_025191 ENSG00000116406 EDEM3 C1orf22 ER degradation enhancing alpha-mannosidase like protein 3 protein-coding 312-143 chr14 51451328 51451538 + 2 NA Intergenic AluSz6|SINE|Alu -37695 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 325-64 chr10 59913781 59913989 + 2 NA Intergenic Intergenic -7329 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 356-111 chr12 78364688 78364903 + 2 NA Intergenic Intergenic -5049 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 179-92 chr5 11024703 11024860 + 2 NA intron (NM_001288715, intron 15 of 20) intron (NM_001288715, intron 15 of 20) -263547 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 434-324 chrX 65277182 65277461 + 2 NA Intergenic L1M2c|LINE|L1 -211414 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 318-40 chr1 213298241 213298424 + 2 NA Intergenic HAL1|LINE|L1 247091 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 366-441 chr8 83882884 83883236 + 2 NA Intergenic Intergenic -299727 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 375-193 chr2 5958102 5958311 + 2 NA intron (NR_026832, intron 1 of 1) L1PBb|LINE|L1 -16456 NR_106980 102465693 NR_106980 ENSG00000276733 MIR7158 hsa-mir-7158 microRNA 7158 ncRNA 573-140 chr5 19059398 19059855 + 2 NA Intergenic L1MA10|LINE|L1 826646 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 194-18 chr1 238299296 238299477 + 2 NA Intergenic L2a|LINE|L2 186631 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 470-266 chr8 72592101 72592404 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 55027 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 511-280 chr9 73459755 73460103 + 2 NA Intergenic Intergenic 308064 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 271-354 chr5 102500938 102501129 + 2 NA Intergenic Intergenic -2032 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 179-130 chr9 30472994 30473143 + 2 NA Intergenic LTR16|LTR|ERVL -64614 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 355-452 chr7 17505192 17505495 + 2 NA intron (NR_110013, intron 1 of 3) intron (NR_110013, intron 1 of 3) 53566 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 657-60 chr20 61381838 61382361 + 2 NA intron (NM_001794, intron 2 of 15) AluSq|SINE|Alu -117322 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 348-353 chr4 48951671 48951910 + 2 NA Intergenic MER51B|LTR|ERV1 -34485 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 249-289 chr4 40728449 40728616 + 2 NA Intergenic Intergenic -21423 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 161-38 chr18 10958374 10958486 + 2 NA intron (NM_022068, intron 3 of 51) L1MA7|LINE|L1 190332 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 254-416 chr8 105745548 105745795 + 2 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 314832 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 404-344 chr9 95978418 95978766 + 2 NA intron (NM_020207, intron 17 of 18) intron (NM_020207, intron 17 of 18) 43219 NR_024129 100188953 Hs.434310 NR_024129 ENSG00000225194 LINC00092 NCRNA00092 long intergenic non-protein coding RNA 92 ncRNA 385-211 chr20 42841884 42842205 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -126699 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 242-257 chr4 39416446 39416677 + 2 NA intron (NM_175737, intron 1 of 4) AluJr|SINE|Alu 4651 NR_049857 100847065 NR_049857 ENSG00000264621 MIR5591 - microRNA 5591 ncRNA 327-57 chr10 74222899 74223170 + 2 NA intron (NM_001202449, intron 2 of 9) intron (NM_001202449, intron 2 of 9) 46271 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 1068-19 chr6 40211550 40212176 + 2 NA Intergenic Intergenic 144143 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 261-362 chr7 94768661 94768850 + 2 NA Intergenic Intergenic 112385 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 281-95 chr12 99144685 99144869 + 2 NA intron (NM_152788, intron 15 of 25) MLT1B|LTR|ERVL-MaLR 9989 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 328-536 chr7 56529806 56530038 + 2 NA Intergenic L1MC2|LINE|L1 8208 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 289-460 chr8 51184595 51184774 + 2 NA Intergenic FRAM|SINE|Alu 624761 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 524-252 chr8 39421675 39422000 + 2 NA Intergenic LOR1a|LTR|ERV1 101152 NR_073423 1587 Hs.98848 NR_001569 ENSG00000197475 ADAM3A ADAM3|CYRN1|tMDCI ADAM metallopeptidase domain 3A (pseudogene) pseudo 297-321 chr4 37376158 37376341 + 2 NA intron (NM_001144990, intron 3 of 6) L1ME4a|LINE|L1 -77676 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 325-431 chr5 23451067 23451362 + 2 NA Intergenic L1MB4|LINE|L1 -56395 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 514-14 chr1 189468126 189468549 + 2 NA Intergenic Intergenic 1007673 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 788-52 chr8 106367663 106368121 + 2 NA intron (NM_018002, intron 2 of 15) L2a|LINE|L2 -80032 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 340-82 chr11 87697412 87697602 + 2 NA Intergenic L1P4a|LINE|L1 21904 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 381-411 chr9 111870112 111870320 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -26598 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 329-242 chr18 64236827 64237066 + 2 NA intron (NR_033983, intron 2 of 2) ERVL-E-int|LTR|ERVL 23109 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 596-120 chr3 63361510 63362078 + 2 NA intron (NM_001130003, intron 2 of 5) (AT)n|Simple_repeat|Simple_repeat -81518 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 306-260 chr2 195874835 195875036 + 2 NA intron (NM_018897, intron 38 of 64) intron (NM_018897, intron 38 of 64) 193902 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 237-410 chr9 118638023 118638188 + 2 NA Intergenic Intergenic -41566 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 439-68 chr12 31922261 31922549 + 2 NA Intergenic Intergenic -35202 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 275-22 chr1 201045337 201045517 + 2 NA intron (NM_000069, intron 38 of 43) L1MC4|LINE|L1 -21713 NM_001252103 23046 Hs.169182 NM_017596 ENSG00000116852 KIF21B - kinesin family member 21B protein-coding 913-28 chr3 171887686 171888365 + 2 NA intron (NR_046852, intron 2 of 2) L1PA14|LINE|L1 12715 NR_046852 100874219 Hs.730556 NR_046852 ENSG00000234717 TMEM212-AS1 - TMEM212 antisense RNA 1 ncRNA 192-7 chr1 89263989 89264117 + 2 NA intron (NM_001134486, intron 7 of 10) intron (NM_001134486, intron 7 of 10) 8807 NM_001134486 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 409-277 chr7 17238264 17238637 + 2 NA Intergenic MIR|SINE|MIR -60202 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 331-351 chr3 76489981 76490284 + 2 NA Intergenic Intergenic -549967 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 351-293 chr3 43452050 43452317 + 2 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) -100221 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 468-138 chr2 39502035 39502352 + 2 NA intron (NR_037875, intron 3 of 5) intron (NR_037875, intron 3 of 5) 64777 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 422-95 chr15 60046545 60046814 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 42368 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 508-7 chr1 73799043 73799535 + 2 NA Intergenic Intergenic 124610 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 280-131 chr14 88229575 88229753 + 2 NA intron (NM_138317, intron 3 of 6) intron (NM_138317, intron 3 of 6) 41247 NM_138318 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 329-46 chr10 27490886 27491167 + 2 NA Intergenic Intergenic -13148 NM_001256412 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 212-185 chr20 16114287 16114477 + 2 NA Intergenic Intergenic -128500 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 313-369 chr3 193917728 193917912 + 2 NA Intergenic Intergenic -73811 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 504-59 chr13 60852315 60852788 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 179596 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 296-325 chr4 23513098 23513268 + 2 NA Intergenic Intergenic 368109 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 496-99 chr15 62310487 62310922 + 2 NA Intergenic L1MA1|LINE|L1 -5970 NR_107034 102465869 NR_107034 ENSG00000277919 MIR8067 hsa-mir-8067 microRNA 8067 ncRNA 439-263 chr7 30304767 30305115 + 2 NA intron (NM_147128, intron 1 of 4) MER63B|DNA|hAT-Blackjack -15051 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 303-15 chr1 167814607 167814793 + 2 NA intron (NM_018417, intron 31 of 32) L1MB3|LINE|L1 92718 NM_003953 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 209-206 chr3 128259781 128259982 + 2 NA intron (NM_021937, intron 2 of 6) L1MB5|LINE|L1 -105967 NM_001319086 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 221-170 chr22 28495770 28495927 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 35979 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 358-447 chr7 82713915 82714155 + 2 NA Intergenic MER66-int|LTR|ERV1 -270079 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 242-73 chr12 29898961 29899192 + 2 NA Intergenic Intergenic -114317 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 124-11 chr11 42804203 42804309 + 2 NA Intergenic Intergenic 465113 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 463-100 chr15 87743805 87744146 + 2 NA Intergenic Intergenic 167046 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 496-52 chr11 110693369 110693780 + 2 NA intron (NM_001258416, intron 1 of 15) intron (NM_001258416, intron 1 of 15) 18251 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 191-93 chr2 34248961 34249118 + 2 NA intron (NR_126403, intron 4 of 5) L1MB4|LINE|L1 181813 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 254-432 chr8 138430074 138430294 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 67077 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 200-46 chr11 37272811 37272963 + 2 NA Intergenic L1MCa|LINE|L1 -665714 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 530-225 chr7 14474622 14475095 + 2 NA intron (NM_001350717, intron 20 of 24) intron (NM_001350717, intron 20 of 24) 366592 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 897-34 chr6 93583932 93584707 + 2 NA Intergenic Intergenic -119698 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 321-22 chr1 118645535 118645722 + 2 NA Intergenic Intergenic 342715 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 240-236 chr2 145114446 145114640 + 2 NA Intergenic Intergenic 446576 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 463-125 chr19 36706015 36706351 + 2 NA intron (NM_001363651, intron 1 of 4) MLT1A1|LTR|ERVL-MaLR 2502 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 434-116 chr18 11931676 11932012 + 2 NA Intergenic Intergenic -23527 NM_001242904 65258 Hs.712666 NM_023075 ENSG00000154889 MPPE1 PGAP5 metallophosphoesterase 1 protein-coding 375-226 chr2 179439553 179439837 + 2 NA Intergenic Intergenic 122893 NR_148055 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 288-72 chr11 101017358 101017532 + 2 NA Intergenic Intergenic 83171 NR_145747 109616988 NR_145747 SNORD13I - small nucleolar RNA, C/D box 13I snoRNA 161-132 chr8 134899511 134899607 + 2 NA Intergenic LTR106_Mam|LTR|LTR 49624 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 549-53 chr13 73311239 73311779 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 252504 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 482-170 chr3 106032109 106032501 + 2 NA Intergenic L2|LINE|L2 -162904 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 465-77 chr14 26156263 26156650 + 2 NA Intergenic MIRb|SINE|MIR 396974 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 112-45 chr7 81689655 81689748 + 2 NA intron (NR_126025, intron 1 of 10) intron (NR_126025, intron 1 of 10) 1705 NR_126025 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 342-535 chr8 129458973 129459182 + 2 NA intron (NR_130920, intron 1 of 3) L2a|LINE|L2 25065 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 178-84 chr22 25050690 25050820 + 2 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) 22781 NM_001145206 85379 Hs.419171 NM_001145206 ENSG00000197077 KIAA1671 - KIAA1671 protein-coding 164-99 chr6 49883811 49883919 + 2 NA Intergenic L1MA3|LINE|L1 -6769 NM_001205220 167 Hs.109620 NM_001131 ENSG00000124812 CRISP1 AEGL1|ARP|CRISP-1|HEL-S-57|HSCRISP1D|HSCRISP1G|HUMARP cysteine rich secretory protein 1 protein-coding 383-139 chr16 6609266 6609543 + 2 NA intron (NM_018723, intron 2 of 15) AluJb|SINE|Alu -164405 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 325-279 chr2 122360058 122360286 + 2 NA Intergenic Intergenic 604521 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 691-41 chr2 78750639 78751144 + 2 NA Intergenic Intergenic 205360 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 425-18 chr1 201129608 201129963 + 2 NA Intergenic MIRc|SINE|MIR -14413 NM_001270601 647219 Hs.143949 NM_001270601 ENSG00000232237 ASCL5 bHLHa47 achaete-scute family bHLH transcription factor 5 protein-coding 255-415 chr8 60268331 60268514 + 2 NA intron (NR_135821, intron 2 of 9) intron (NR_135821, intron 2 of 9) 12978 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 1426-4 chr8 138629552 138630608 + 2 NA intron (NM_152888, intron 50 of 64) intron (NM_152888, intron 50 of 64) -132350 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 131-65 chr5 152233988 152234110 + 2 NA intron (NR_109876, intron 1 of 2) L1ME1|LINE|L1 171230 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 277-294 chr4 110018880 110019062 + 2 NA Intergenic L1ME3D|LINE|L1 106088 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 390-16 chr1 157670892 157671177 + 2 NA Intergenic Intergenic 29735 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 326-448 chr6 46866950 46867131 + 2 NA exon (NM_015234, exon 13 of 21) exon (NM_015234, exon 13 of 21) -36431 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 276-446 chr8 70932032 70932190 + 2 NA Intergenic L2c|LINE|L2 262772 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 294-329 chr4 45408262 45408530 + 2 NA Intergenic Intergenic -681762 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 559-96 chr2 102043279 102043665 + 2 NA Intergenic MIRc|SINE|MIR -26918 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 431-33 chr10 28173660 28174009 + 2 NA intron (NR_134518, intron 2 of 16) L1ME3A|LINE|L1 -100456 NR_132973 106635548 NR_132973 SNORD130 - small nucleolar RNA, C/D box 130 snoRNA 355-543 chrX 81468972 81469183 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 266975 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 602-140 chrX 23467425 23467838 + 2 NA Intergenic L1MB2|LINE|L1 132782 NM_173495 139411 Hs.319503 NM_173495 ENSG00000165186 PTCHD1 AUTSX4 patched domain containing 1 protein-coding 277-299 chr4 160733413 160733658 + 2 NA Intergenic L1ME4b|LINE|L1 -955751 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 515-122 chr2 107245472 107245882 + 2 NA intron (NR_049853, intron 2 of 3) intron (NR_049853, intron 2 of 3) 103848 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 556-211 chr7 108557421 108557867 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 11809 NM_001287598 168451 Hs.707689 NM_182529 ENSG00000177683 THAP5 - THAP domain containing 5 protein-coding 231-61 chr11 113218073 113218272 + 2 NA intron (NM_000615, intron 8 of 17) intron (NM_000615, intron 8 of 17) 55729 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 251-308 chr5 97796478 97796631 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -44204 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 288-383 chr6 149199414 149199570 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -18432 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 282-299 chr3 69834547 69834820 + 2 NA intron (NM_001354607, intron 2 of 10) L1MA6|LINE|L1 -31541 NM_198177 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 485-165 chr20 43238572 43238895 + 2 NA Intergenic Intergenic -48827 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 214-206 chr3 76519503 76519658 + 2 NA Intergenic Intergenic -520519 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 261-94 chr14 30849217 30849389 + 2 NA Intergenic Intergenic -25232 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 157-92 chr4 98955170 98955286 + 2 NA Intergenic LTR33|LTR|ERVL -24591 NM_001968 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 338-269 chr2 125795618 125795840 + 2 NA Intergenic L1MB1|LINE|L1 322256 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 331-160 chr14 65649422 65649741 + 2 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 178479 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 156-3 chr1 115550823 115550948 + 2 NA Intergenic L2c|LINE|L2 -91085 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 284-213 chr2 153584531 153584697 + 2 NA Intergenic L1PB4|LINE|L1 -105852 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 357-277 chr3 99569269 99569510 + 2 NA Intergenic Intergenic -69205 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 312-538 chr8 141510921 141511113 + 2 NA Intergenic L2a|LINE|L2 -3787 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 297-201 chr2 20751910 20752205 + 2 NA intron (NM_021925, intron 4 of 6) AluJo|SINE|Alu 71044 NM_001282720 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 227-244 chr4 35463381 35463547 + 2 NA Intergenic LTR1A1|LTR|ERV1 780475 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 339-58 chr10 32804082 32804264 + 2 NA intron (NM_001321115, intron 30 of 43) intron (NM_001321115, intron 30 of 43) 97299 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 867-24 chr2 146094733 146095320 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -492031 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 350-61 chr10 115369616 115369794 + 2 NA intron (NM_207303, intron 19 of 28) L1MA7|LINE|L1 276340 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 203-174 chr4 187536189 187536316 + 2 NA intron (NR_110436, intron 2 of 2) MIRb|SINE|MIR -30639 NR_038931 339975 Hs.639361 NR_038931 LOC339975 - uncharacterized LOC339975 ncRNA 358-268 chr20 62483363 62483585 + 2 NA Intergenic Intergenic -7479 NM_080473 140628 Hs.352250 NM_080473 ENSG00000130700 GATA5 CHTD5|GATAS|bB379O24.1 GATA binding protein 5 protein-coding 420-123 chr2 14058299 14058626 + 2 NA Intergenic L1MB8|LINE|L1 342496 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 270-219 chr21 30081757 30081973 + 2 NA Intergenic Intergenic 84940 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 258-93 chr12 61437300 61437475 + 2 NA Intergenic Intergenic 755452 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 337-552 chr8 121309474 121309696 + 2 NA Intergenic L1MA8|LINE|L1 -329761 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 323-254 chr2 78010233 78010410 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -55295 NR_024342 100170221 Hs.717311 NR_024342 SNAR-H snaR-2 small NF90 (ILF3) associated RNA H snRNA 267-320 chr5 21875221 21875464 + 2 NA intron (NM_004061, intron 6 of 14) MIRb|SINE|MIR -9112 NR_132788 106635540 NR_132788 SNORA105B - small nucleolar RNA, H/ACA box 105B snoRNA 306-18 chr1 84172307 84172465 + 2 NA intron (NM_001300915, intron 1 of 11) intron (NM_001300915, intron 1 of 11) 7692 NM_001300915 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 392-359 chrX 57201342 57201592 + 2 NA Intergenic L1MA2|LINE|L1 -63842 NM_019003 54466 Hs.460725 NM_019003 ENSG00000147059 SPIN2A DXF34|SPIN2|TDRD25|dJ323P24.1 spindlin family member 2A protein-coding 259-421 chr8 136158913 136159118 + 2 NA Intergenic LTR1A1|LTR|ERV1 -371783 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 239-94 chr13 110098839 110099065 + 2 NA Intergenic L1ME1|LINE|L1 -22750 NR_148221 105370361 Hs.134728 NR_148221 LOC105370361 - uncharacterized LOC105370361 ncRNA 720-14 chr10 124567715 124568249 + 2 NA intron (NM_022126, intron 6 of 6) AluSc8|SINE|Alu 106159 NM_001318331 64077 Hs.527748 NM_022126 ENSG00000107902 LHPP HDHD2B phospholysine phosphohistidine inorganic pyrophosphate phosphatase protein-coding 338-516 chr7 110928373 110928653 + 2 NA intron (NM_032549, intron 4 of 5) intron (NM_032549, intron 4 of 5) -162493 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 439-129 chr2 41313866 41314237 + 2 NA Intergenic Intergenic -563504 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 259-289 chr4 91443599 91443757 + 2 NA intron (NM_001145065, intron 10 of 10) L1HS|LINE|L1 833624 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 268-317 chr5 86943421 86943631 + 2 NA Intergenic L1M1|LINE|L1 171428 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 511-233 chr6 114902454 114902718 + 2 NA Intergenic L1PA13|LINE|L1 741249 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 681-81 chr8 25542150 25542760 + 2 NA Intergenic AluSq|SINE|Alu 83222 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 428-305 chr8 115990258 115990579 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) -321443 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 296-499 chr9 113842256 113842444 + 2 NA Intergenic L1ME4a|LINE|L1 -33932 NM_001318040 114991 Hs.349208 NM_133374 ENSG00000157657 ZNF618 FP13169|NEDD10 zinc finger protein 618 protein-coding 470-275 chr8 125221733 125222047 + 2 NA intron (NM_001349486, intron 5 of 7) Tigger4b|DNA|TcMar-Tigger 130030 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 379-309 chr6 163850122 163850466 + 2 NA Intergenic L1MA10|LINE|L1 -178810 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 268-109 chr14 26574424 26574653 + 2 NA intron (NM_001366391, intron 2 of 5) intron (NM_001366391, intron 2 of 5) -21108 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 555-202 chr8 74901659 74902013 + 2 NA Intergenic MER41-int|LTR|ERV1 77302 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 330-414 chr5 33338419 33338638 + 2 NA Intergenic Intergenic -102168 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 400-15 chr1 158191552 158191943 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 11800 NM_001319145 912 Hs.1799 NM_001766 ENSG00000158473 CD1D CD1A|R3|R3G1 CD1d molecule protein-coding 238-193 chr2 211605947 211606176 + 2 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 820299 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 641-108 chr8 59343686 59344204 + 2 NA Intergenic AluJr|SINE|Alu 224735 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 246-236 chr20 57233736 57233978 + 2 NA intron (NM_001719, intron 1 of 6) intron (NM_001719, intron 1 of 6) 20161 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 258-161 chr17 54716987 54717194 + 2 NA Intergenic Intergenic -183601 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 282-369 chr5 31072674 31072906 + 2 NA Intergenic LTR81B|LTR|Gypsy -120896 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 234-46 chr10 99037593 99037735 + 2 NA intron (NM_021828, intron 3 of 11) L1ME5|LINE|L1 -113096 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 225-47 chr10 120585977 120586089 + 2 NA intron (NR_134516, intron 4 of 4) intron (NR_134516, intron 4 of 4) -11916 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 330-460 chr6 60665991 60666263 + 2 NA Intergenic MER68|LTR|ERVL -908003 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 504-10 chr1 170274737 170275139 + 2 NA intron (NR_026957, intron 2 of 3) L2c|LINE|L2 9270 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 290-39 chr10 16672410 16672665 + 2 NA intron (NM_152724, intron 7 of 7) L1ME1|LINE|L1 144887 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 232-239 chr3 65148930 65149131 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -461030 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 401-165 chr2 114762547 114762779 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 70885 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 305-179 chr16 54706110 54706349 + 2 NA Intergenic L1MEd|LINE|L1 142004 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 564-195 chr7 137043370 137043858 + 2 NA intron (NR_046103, intron 1 of 3) L1MC3|LINE|L1 120727 NR_046103 349160 Hs.660713 NR_046103 ENSG00000234352 LOC349160 - uncharacterized LOC349160 ncRNA 408-313 chr7 13257626 13258022 + 2 NA Intergenic Intergenic 570191 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 279-43 chr10 61051978 61052188 + 2 NA Intergenic Intergenic 35808 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 361-350 chr5 17341147 17341398 + 2 NA Intergenic Intergenic 46038 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 381-25 chr1 218610251 218610522 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 100291 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 481-61 chr12 4452873 4453342 + 2 NA Intergenic AluSg|SINE|Alu -7493 NM_020996 2251 Hs.166015 NM_020996 ENSG00000111241 FGF6 HBGF-6|HST2 fibroblast growth factor 6 protein-coding 287-159 chr17 31847870 31848061 + 2 NA Intergenic Intergenic 10997 NM_001330176 55352 Hs.462729 NM_018405 ENSG00000172301 COPRS C17orf79|COPR5|HSA272196|TTP1 coordinator of PRMT5 and differentiation stimulator protein-coding 330-149 chr14 38810580 38810764 + 2 NA intron (NR_039982, intron 4 of 4) L1PB1|LINE|L1 -71924 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 317-541 chrX 7785441 7785623 + 2 NA Intergenic Intergenic -56730 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 315-195 chr17 83132859 83133135 + 2 NA Intergenic Intergenic 51851 NM_001363853 284207 Hs.378821 NM_001004431 ENSG00000176845 METRNL - meteorin like, glial cell differentiation regulator protein-coding 336-572 chr8 142332489 142332678 + 2 NA intron (NM_001291931, intron 2 of 10) intron (NM_001291931, intron 2 of 10) 70599 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 273-422 chr7 47875252 47875421 + 2 NA intron (NM_138295, intron 23 of 56) intron (NM_138295, intron 23 of 56) 73155 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 326-95 chr11 30049814 30049982 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -32868 NM_002233 3739 Hs.592002 NM_002233 ENSG00000182255 KCNA4 HBK4|HK1|HPCN2|HUKII|KCNA4L|KCNA8|KV1.4|MCIDDS|PCN2 potassium voltage-gated channel subfamily A member 4 protein-coding 422-198 chr3 162747693 162748031 + 2 NA Intergenic L1MA3|LINE|L1 555439 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 560-133 chr4 181463139 181463548 + 2 NA Intergenic Intergenic -198314 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 451-78 chr14 87229302 87229663 + 2 NA Intergenic Intergenic 323704 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 371-7 chr1 69608167 69608429 + 2 NA intron (NM_001366842, intron 1 of 7) intron (NM_001366842, intron 1 of 7) 38957 NM_001366842 57554 Hs.479658 NM_020794 ENSG00000033122 LRRC7 DENSIN leucine rich repeat containing 7 protein-coding 550-217 chr7 62766920 62767438 + 2 NA Intergenic ALR/Alpha|Satellite|centr 536877 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 272-381 chr6 52112085 52112279 + 2 NA Intergenic L2a|LINE|L2 -24569 NM_138694 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 112-37 chr4 150146386 150146446 + 2 NA intron (NM_001040260, intron 2 of 15) intron (NM_001040260, intron 2 of 15) 67971 NR_036614 166614 Hs.591683 NM_152619 ENSG00000170390 DCLK2 CL2|CLICK-II|CLICK2|CLIK2|DCAMKL2|DCDC3|DCDC3B|DCK2 doublecortin like kinase 2 protein-coding 348-241 chr2 173684130 173684326 + 2 NA Intergenic Intergenic 279652 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 343-117 chr12 126079518 126079800 + 2 NA Intergenic Intergenic -16333 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 319-403 chr5 29485431 29485745 + 2 NA Intergenic Intergenic -89612 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 523-158 chr21 14561102 14561533 + 2 NA intron (NM_001256370, intron 2 of 8) LTR8B|LTR|ERV1 -14957 NM_001286523 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 283-2 chr1 16441315 16441484 + 2 NA intron (NM_018090, intron 1 of 7) intron (NM_018090, intron 1 of 7) 675 NM_018090 55707 Hs.437385 NM_018090 ENSG00000157191 NECAP2 - NECAP endocytosis associated 2 protein-coding 452-228 chr6 24622433 24622675 + 2 NA intron (NM_001350409, intron 1 of 21) HAL1ME|LINE|L1 23467 NM_001168376 9856 Hs.26441 NM_014809 ENSG00000137261 KIAA0319 AAVR|DYLX2|DYX2|NMIG KIAA0319 protein-coding 645-117 chr8 40645615 40646241 + 2 NA intron (NM_001135731, intron 4 of 5) intron (NM_001135731, intron 4 of 5) 251898 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 387-115 chr15 36169816 36170095 + 2 NA Intergenic Intergenic 243099 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 372-320 chr3 25093243 25093472 + 2 NA intron (NM_001290216, intron 3 of 10) LTR8A|LTR|ERV1 -247445 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 314-155 chr13 93073798 93074093 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 28604 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 181-147 chr7 15161662 15161763 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -186854 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 477-16 chr1 119235949 119236209 + 2 NA intron (NR_125975, intron 4 of 6) intron (NR_125975, intron 4 of 6) -92173 NR_146623 105378934 NR_146623 ENSG00000232650 LINC01780 - long intergenic non-protein coding RNA 1780 ncRNA 666-99 chr5 136904143 136904616 + 2 NA Intergenic L1MEa|LINE|L1 -223818 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 324-6 chr1 34374825 34375145 + 2 NA Intergenic L1ME4c|LINE|L1 198078 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 626-108 chr5 9615046 9615510 + 2 NA Intergenic L2a|LINE|L2 15073 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 160-95 chr6 118248201 118248351 + 2 NA intron (NM_001029858, intron 3 of 7) intron (NM_001029858, intron 3 of 7) 162373 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 117-35 chr6 17177533 17177643 + 2 NA Intergenic Intergenic 75330 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 260-101 chr12 37886799 37887045 + 2 NA Intergenic ALR/Alpha|Satellite|centr -429852 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 334-125 chr13 35007732 35007968 + 2 NA intron (NM_015678, intron 1 of 57) L1MEg|LINE|L1 65563 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 329-95 chr11 74495973 74496222 + 2 NA intron (NM_001319240, intron 1 of 1) L1MD1|LINE|L1 -2373 NM_001144869 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 252-192 chr2 67424057 67424217 + 2 NA Intergenic L1MEf|LINE|L1 26804 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 231-272 chr5 12009771 12009996 + 2 NA Intergenic L1ME3E|LINE|L1 -105437 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 357-428 chr8 25539894 25540106 + 2 NA Intergenic AluYk4|SINE|Alu 80767 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 564-216 chrX 110759275 110759818 + 2 NA intron (NR_159734, intron 4 of 12) intron (NR_159734, intron 4 of 12) 36271 NM_001367208 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 389-136 chr17 53361164 53361439 + 2 NA Intergenic Intergenic 375796 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 171-37 chr15 75117776 75117888 + 2 NA Intergenic L1M4|LINE|L1 74546 NM_001301105 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 310-572 chrX 67183524 67183751 + 2 NA Intergenic Intergenic -360384 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 193-193 chr8 26430479 26430599 + 2 NA Intergenic Intergenic 40126 NM_001330491 665 Hs.131226 NM_004331 ENSG00000104765 BNIP3L BNIP3a|NIX BCL2 interacting protein 3 like protein-coding 287-272 chr3 188808101 188808259 + 2 NA intron (NM_001167672, intron 7 of 9) L1MCc|LINE|L1 119399 NR_029502 407020 NR_029502 ENSG00000207651 MIR28 MIRN28|hsa-mir-28|miR-28 microRNA 28 ncRNA 279-139 chr17 60462281 60462458 + 2 NA intron (NM_006380, intron 6 of 12) intron (NM_006380, intron 6 of 12) 39880 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 368-304 chr3 134133003 134133243 + 2 NA Intergenic Intergenic -75475 NR_135574 100507210 Hs.669052 NR_135574 ENSG00000243832 LINC02000 - long intergenic non-protein coding RNA 2000 ncRNA 412-176 chr2 201517559 201517811 + 2 NA intron (NM_001168216, intron 11 of 12) HERVL40-int|LTR|ERVL 65945 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 407-167 chr20 42144415 42144772 + 2 NA intron (NM_133170, intron 18 of 31) intron (NM_133170, intron 18 of 31) -526216 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 289-172 chr16 73725964 73726172 + 2 NA Intergenic Intergenic 339263 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 314-28 chr1 147433878 147434137 + 2 NA intron (NR_038423, intron 3 of 3) L2|LINE|L2 83868 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 483-290 chrX 15912061 15912495 + 2 NA Intergenic Intergenic -57465 NM_001369008 8905 Hs.121592 NM_003916 ENSG00000182287 AP1S2 DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B adaptor related protein complex 1 subunit sigma 2 protein-coding 161-36 chr17 58668773 58668892 + 2 NA intron (NM_031272, intron 1 of 31) Charlie17b|DNA|hAT-Charlie 23223 NM_001201457 56155 Hs.390221 NM_031272 ENSG00000121101 TEX14 CT113|SPGF23 testis expressed 14, intercellular bridge forming factor protein-coding 115-18 chr18 13517678 13517774 + 2 NA intron (NM_181482, intron 4 of 5) L1MEd|LINE|L1 57779 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 307-488 chr8 116276827 116277000 + 2 NA intron (NR_046215, intron 1 of 13) L1ME3Cz|LINE|L1 48146 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 287-3 chr1 14806973 14807245 + 2 NA intron (NM_201628, intron 1 of 14) LTR67B|LTR|ERVL -117020 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 341-577 chrX 81876967 81877232 + 2 NA Intergenic L1MA3|LINE|L1 674997 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 320-273 chr2 122489439 122489692 + 2 NA Intergenic Intergenic 583916 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 329-154 chr14 43237008 43237194 + 2 NA Intergenic AluSc|SINE|Alu 1270182 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 197-175 chr5 121692467 121692628 + 2 NA Intergenic Intergenic -159335 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 294-14 chr1 155740882 155741150 + 2 NA Intergenic AluJb|SINE|Alu -4752 NR_024117 100129405 Hs.656361 NR_024117 MSTO2P MSTO2 misato family member 2, pseudogene pseudo 481-221 chr4 85561734 85562139 + 2 NA intron (NM_001025616, intron 1 of 9) L2a|LINE|L2 86786 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 316-390 chr4 47356595 47356883 + 2 NA intron (NM_000812, intron 5 of 8) intron (NM_000812, intron 5 of 8) 106963 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 405-301 chr7 43401598 43401865 + 2 NA intron (NM_001287059, intron 6 of 27) LTR1F1|LTR|ERV1 120811 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 683-81 chr7 49138444 49138859 + 2 NA Intergenic ERV24B_Prim-int|LTR|ERV1 214104 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 137-31 chr16 10476251 10476366 + 2 NA intron (NM_024997, intron 10 of 11) intron (NM_024997, intron 10 of 11) 51890 NR_149081 106144584 Hs.531561 NR_149081 ENSG00000260468 LINC01290 - long intergenic non-protein coding RNA 1290 ncRNA 202-161 chr3 54904767 54904938 + 2 NA intron (NM_018398, intron 27 of 37) intron (NM_018398, intron 27 of 37) -3597 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 249-174 chr19 33608763 33608914 + 2 NA Intergenic HAL1M8|LINE|L1 -13115 NM_001127895 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 441-69 chr13 103939086 103939400 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack 514043 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 207-99 chr16 64635772 64635903 + 2 NA Intergenic Intergenic 486226 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 302-244 chr20 144602 144811 + 2 NA intron (NM_030931, intron 1 of 1) intron (NM_030931, intron 1 of 1) 2116 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 168-50 chr2 13143257 13143402 + 2 NA Intergenic L1MC5|LINE|L1 -136316 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 270-184 chr2 71107498 71107714 + 2 NA Intergenic Intergenic 22623 NM_032601 84693 Hs.94949 NM_032601 ENSG00000124370 MCEE GLOD2 methylmalonyl-CoA epimerase protein-coding 172-30 chr12 76904643 76904808 + 2 NA Intergenic AluY|SINE|Alu -25706 NM_001300965 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 239-323 chr5 93255959 93256145 + 2 NA Intergenic Intergenic 315291 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 611-138 chr7 68344596 68345046 + 2 NA Intergenic L1MEg|LINE|L1 324568 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 304-490 chr7 54258424 54258715 + 2 NA Intergenic Intergenic -72128 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 257-372 chr7 3112659 3112863 + 2 NA Intergenic Intergenic 45812 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 335-84 chr11 20793736 20793933 + 2 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 124248 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 513-101 chr16 80213852 80214270 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -326673 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 525-104 chr2 4475869 4476228 + 2 NA Intergenic Intergenic 180174 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 352-562 chr9 73737641 73737897 + 2 NA Intergenic L2c|LINE|L2 585904 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 231-53 chr11 29384745 29384897 + 2 NA Intergenic Intergenic -209592 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 461-212 chr5 46048003 46048422 + 2 NA Intergenic ALR/Alpha|Satellite|centr -351832 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 236-292 chr5 92496542 92496703 + 2 NA Intergenic Intergenic 1074721 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 308-243 chr2 122567746 122567937 + 2 NA Intergenic L1M3|LINE|L1 505640 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 461-201 chr4 114210688 114211121 + 2 NA Intergenic HAL1b|LINE|L1 -231257 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 284-312 chr5 25918739 25919011 + 2 NA Intergenic L1PA14|LINE|L1 727922 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 574-86 chr2 189943718 189944106 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 118817 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 290-380 chr6 33800032 33800268 + 2 NA intron (NM_001040109, intron 2 of 4) intron (NM_001040109, intron 2 of 4) 3853 NM_001184698 4295 Hs.2813 NM_002418 ENSG00000096395 MLN - motilin protein-coding 539-45 chr12 3957883 3958277 + 2 NA Intergenic AluSz|SINE|Alu -84632 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 220-388 chr9 14020964 14021174 + 2 NA Intergenic L1ME4b|LINE|L1 93098 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 507-3 chr1 37052839 37053191 + 2 NA Intergenic Intergenic -18500 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 592-102 chr22 29178939 29179299 + 2 NA Intergenic L1M5|LINE|L1 -26777 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 212-179 chr2 201932586 201932764 + 2 NA Intergenic Intergenic -101912 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 342-566 chrX 39219923 39220123 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 107339 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 486-158 chr2 153618937 153619401 + 2 NA Intergenic L1MA1|LINE|L1 -140407 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 408-220 chr3 187123541 187123750 + 2 NA intron (NM_052969, intron 2 of 2) intron (NM_052969, intron 2 of 2) 15851 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 397-199 chr3 3041082 3041429 + 2 NA intron (NR_046554, intron 2 of 3) L2c|LINE|L2 19890 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 348-299 chr3 80338111 80338297 + 2 NA Intergenic L1MA4A|LINE|L1 -426693 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 351-204 chr2 9860588 9860863 + 2 NA intron (NM_001318977, intron 5 of 13) L2-1_AMi|LINE|L2 17251 NM_005680 9014 Hs.584833 NM_005680 ENSG00000115750 TAF1B MGC:9349|RAF1B|RAFI63|SL1|TAFI63 TATA-box binding protein associated factor, RNA polymerase I subunit B protein-coding 402-108 chr16 82269227 82269537 + 2 NA Intergenic Intergenic -99158 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 201-169 chr4 31097639 31097785 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -73432 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 334-169 chr15 37205469 37205741 + 2 NA Intergenic MER91B|DNA|hAT-Tip100 -104294 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 439-12 chr1 104794496 104794919 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 721684 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 275-293 chr5 93311405 93311627 + 2 NA Intergenic Intergenic 259827 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 297-475 chr8 91369053 91369222 + 2 NA intron (NM_134266, intron 14 of 18) MIRb|SINE|MIR 119818 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 307-213 chr19 30328616 30328862 + 2 NA Intergenic Intergenic -43645 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 361-134 chr14 46350682 46350954 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -120541 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 328-310 chr20 12302399 12302598 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 384605 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 480-299 chr8 121896580 121896927 + 2 NA Intergenic Intergenic -255313 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 455-138 chr2 204740625 204740937 + 2 NA intron (NM_205863, intron 2 of 21) MLT1G|LTR|ERVL-MaLR 195306 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 426-2 chr1 30026713 30026993 + 2 NA intron (NR_110790, intron 3 of 6) L1MB3|LINE|L1 10759 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 788-22 chr17 54104324 54104904 + 2 NA Intergenic L1PA16|LINE|L1 281687 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 302-140 chr15 27508447 27508617 + 2 NA intron (NM_033223, intron 6 of 9) L1MCa|LINE|L1 -347213 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 467-241 chr6 38663328 38663657 + 2 NA Intergenic HERVL-int|LTR|ERVL -23563 NM_052893 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 294-72 chr12 9147713 9147992 + 2 NA TTS (NM_002864) TTS (NM_002864) -31623 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 342-417 chr5 108945496 108945809 + 2 NA intron (NM_001308031, intron 1 of 10) intron (NM_001308031, intron 1 of 10) 21046 NM_001308031 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 131-28 chr15 65156249 65156369 + 2 NA intron (NM_006660, intron 9 of 13) intron (NM_006660, intron 9 of 13) -22501 NM_005707 10081 Hs.458596 NM_005707 ENSG00000090470 PDCD7 ES18|HES18 programmed cell death 7 protein-coding 258-217 chr2 226671551 226671691 + 2 NA Intergenic Intergenic -12828 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 345-108 chr12 14130065 14130249 + 2 NA Intergenic Intergenic -149801 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 205-117 chr17 51565866 51566067 + 2 NA Intergenic Intergenic 130539 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 340-295 chr2 195185673 195185859 + 2 NA Intergenic Intergenic 455171 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 157-104 chr5 60077634 60077762 + 2 NA intron (NM_001349243, intron 2 of 16) L1PREC2|LINE|L1 -183972 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 571-106 chr3 82941498 82941878 + 2 NA Intergenic Intergenic 955546 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 374-422 chr9 138036879 138037075 + 2 NA intron (NM_001243812, intron 20 of 45) L1MC5a|LINE|L1 8094 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 270-322 chr6 10672692 10672872 + 2 NA intron (NM_001354357, intron 4 of 5) MLT1B|LTR|ERVL-MaLR 21827 NM_001145020 347744 Hs.61389 NM_001145020 ENSG00000137434 C6orf52 - chromosome 6 open reading frame 52 protein-coding 403-324 chr9 82778814 82779158 + 2 NA Intergenic AluSx1|SINE|Alu 284156 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 263-201 chr2 76499027 76499258 + 2 NA Intergenic Intergenic -486823 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 236-110 chr14 44568753 44568924 + 2 NA Intergenic L1PB1|LINE|L1 61429 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 344-193 chr17 79663075 79663250 + 2 NA Intergenic Intergenic 44087 NR_039893 100616170 NR_039893 ENSG00000266665 MIR4739 mir-4739 microRNA 4739 ncRNA 543-199 chr5 38590740 38591187 + 2 NA intron (NR_103554, intron 1 of 8) L2a|LINE|L2 4442 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 308-476 chr7 137830779 137830933 + 2 NA intron (NM_001321708, intron 1 of 32) MIRb|SINE|MIR 15476 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 301-420 chr7 46740643 46740882 + 2 NA Intergenic Intergenic -43640 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 267-67 chr11 86799327 86799562 + 2 NA intron (NM_001293180, intron 1 of 1) MIRb|SINE|MIR -1098 NM_001293179 11098 Hs.25338 NM_007173 ENSG00000150687 PRSS23 SIG13|SPUVE|ZSIG13 serine protease 23 protein-coding 198-155 chr3 7118037 7118214 + 2 NA intron (NM_000844, intron 1 of 9) AluJb|SINE|Alu -224108 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 290-303 chr4 12914679 12914878 + 2 NA Intergenic MLT2B1|LTR|ERVL 569562 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 245-375 chrX 54538998 54539208 + 2 NA intron (NM_019067, intron 3 of 15) intron (NM_019067, intron 3 of 15) 8884 NM_019067 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 227-106 chr14 52261264 52261452 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -6340 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 351-38 chr10 39151292 39151549 + 2 NA Intergenic ALR/Alpha|Satellite|centr 454824 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 475-181 chr3 59701619 59702009 + 2 NA Intergenic L2b|LINE|L2 -43317 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 381-222 chr20 9031500 9031729 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -37440 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 315-52 chr10 52990053 52990215 + 2 NA Intergenic Intergenic -218434 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 378-463 chrX 39230326 39230580 + 2 NA Intergenic Intergenic 96909 NR_038968 286442 Hs.638478 NR_038968 ENSG00000235304 LINC01281 - long intergenic non-protein coding RNA 1281 ncRNA 345-85 chr11 21534745 21534964 + 2 NA intron (NM_001288713, intron 17 of 20) intron (NM_001288713, intron 17 of 20) -658231 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 541-130 chr2 162849845 162850272 + 2 NA Intergenic MLT2C1|LTR|ERVL -11291 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 365-424 chr9 73495026 73495278 + 2 NA Intergenic MER85|DNA|PiggyBac 343287 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 591-137 chr5 129191976 129192450 + 2 NA Intergenic L1MA3|LINE|L1 94525 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 298-477 chr8 127154863 127155053 + 2 NA Intergenic L2c|LINE|L2 42669 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 439-40 chr10 109529566 109529864 + 2 NA Intergenic L1PA15-16|LINE|L1 393531 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 329-569 chr8 73164195 73164447 + 2 NA Intergenic AluSz|SINE|Alu -71149 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 251-76 chr12 133136551 133136752 + 2 NA intron (NM_015394, intron 1 of 4) intron (NM_015394, intron 1 of 4) 6024 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 342-154 chr14 99160698 99160978 + 2 NA Intergenic Intergenic 111359 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 308-315 chr4 161963 162163 + 2 NA exon (NM_001289930, exon 4 of 4) exon (NM_001289930, exon 4 of 4) 33942 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 232-142 chr18 28980944 28981139 + 2 NA Intergenic Intergenic -803911 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 285-389 chr7 64533587 64533750 + 2 NA intron (NM_001130022, intron 3 of 3) L1PB1|LINE|L1 29403 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 524-254 chr8 49277324 49277657 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 205146 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 376-335 chr5 136690081 136690363 + 2 NA Intergenic L1PA15-16|LINE|L1 -324746 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 342-479 chr7 18500973 18501263 + 2 NA intron (NM_058176, intron 1 of 22) HAL1b|LINE|L1 4856 NM_178425 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 212-288 chr6 156672726 156672864 + 2 NA Intergenic L1MC1|LINE|L1 -105060 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 353-409 chr5 63616456 63616724 + 2 NA Intergenic Intergenic 345702 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 312-492 chr7 87872690 87872996 + 2 NA intron (NM_018843, intron 1 of 11) AluSx1|SINE|Alu 3517 NM_018843 55972 Hs.208414 NM_018843 ENSG00000075303 SLC25A40 MCFP solute carrier family 25 member 40 protein-coding 321-420 chr4 64962546 64962758 + 2 NA intron (NR_033976, intron 2 of 6) intron (NR_033976, intron 2 of 6) 41848 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 315-506 chr9 27197267 27197436 + 2 NA exon (NM_001290078, exon 10 of 21) exon (NM_001290078, exon 10 of 21) 85442 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 460-309 chrX 85367966 85368356 + 2 NA intron (NM_001307940, intron 2 of 15) L1PB4|LINE|L1 11504 NM_001307940 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 161-22 chr13 57572231 57572373 + 2 NA Intergenic L1PA16|LINE|L1 -59442 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 317-61 chr10 85655754 85656005 + 2 NA intron (NM_017551, intron 12 of 15) L2a|LINE|L2 78148 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 259-237 chr21 23493571 23493750 + 2 NA Intergenic Intergenic -108825 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 371-236 chr3 35234736 35234935 + 2 NA intron (NR_110817, intron 2 of 3) MLT1H1|LTR|ERVL-MaLR 159188 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 513-88 chr15 80603531 80603949 + 2 NA Intergenic AluSx1|SINE|Alu 22637 NR_049837 100847042 NR_049837 ENSG00000284059 MIR5572 - microRNA 5572 ncRNA 247-436 chr9 129362910 129363044 + 2 NA Intergenic Intergenic 26054 NR_120685 100506119 Hs.624047 NR_120685 ENSG00000233901 LINC01503 - long intergenic non-protein coding RNA 1503 ncRNA 384-16 chr1 115694099 115694339 + 2 NA 3' UTR (NM_138959, exon 8 of 8) 3' UTR (NM_138959, exon 8 of 8) 51590 NM_001172412 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 471-232 chr6 94753728 94754029 + 2 NA Intergenic L1MC|LINE|L1 823573 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 252-52 chr10 104104695 104104863 + 2 NA Intergenic Intergenic -17279 NM_145247 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 364-39 chr1 234148077 234148413 + 2 NA intron (NM_173508, intron 2 of 7) L1MEh|LINE|L1 -65966 NM_001300845 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 282-306 chr3 115002373 115002603 + 2 NA intron (NM_015642, intron 1 of 9) L1MC2|LINE|L1 68926 NM_001164343 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 285-37 chr10 56387704 56387967 + 2 NA Intergenic L1M3de|LINE|L1 -26562 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 478-300 chr8 131508945 131509302 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -394970 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 325-505 chr7 53645308 53645474 + 2 NA Intergenic L1MC3|LINE|L1 166540 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 380-118 chr14 45576384 45576737 + 2 NA Intergenic L1MA3|LINE|L1 139042 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 655-26 chr12 28666967 28667402 + 2 NA Intergenic L1M2|LINE|L1 -476446 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 167-81 chr3 162742554 162742652 + 2 NA Intergenic Intergenic 560698 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 298-82 chr11 99618478 99618767 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 62477 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 377-233 chr2 201224768 201224961 + 2 NA intron (NM_032974, intron 9 of 9) L1ME4a|LINE|L1 -8579 NM_033355 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 313-547 chr8 138305220 138305505 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 191899 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 263-357 chr6 61859122 61859283 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 285072 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 244-345 chr7 51438872 51439036 + 2 NA Intergenic L1MA8|LINE|L1 -45698 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 481-46 chr10 125392290 125392714 + 2 NA Intergenic Intergenic -181869 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 327-33 chr1 240521152 240521375 + 2 NA intron (NM_022469, intron 1 of 1) intron (NM_022469, intron 1 of 1) 90892 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 517-88 chr15 95696060 95696441 + 2 NA Intergenic Intergenic 263157 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 240-420 chr8 118653742 118653924 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -31870 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 363-198 chr19 50054342 50054633 + 2 NA intron (NR_138096, intron 1 of 4) L1ME4b|LINE|L1 3898 NR_027257 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 468-302 chr7 89226464 89226891 + 2 NA intron (NM_181646, intron 2 of 3) intron (NM_181646, intron 2 of 3) -430940 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 273-123 chr13 113188110 113188320 + 2 NA 5' UTR (NM_001353095, exon 8 of 15) 5' UTR (NM_001353095, exon 8 of 15) -19978 NM_001278513 8451 Hs.339735 NM_003589 ENSG00000139842 CUL4A - cullin 4A protein-coding 422-149 chr2 102922488 102922775 + 2 NA Intergenic Intergenic -26909 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 489-203 chr5 51774515 51774886 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -233331 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 320-141 chr14 37292901 37293068 + 2 NA intron (NM_138731, intron 8 of 13) HAL1b|LINE|L1 95047 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 557-156 chr5 27102127 27102574 + 2 NA Intergenic Intergenic -63764 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 298-223 chr2 103039063 103039236 + 2 NA Intergenic Intergenic -54720 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 201-29 chr10 60598634 60598807 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -25764 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 257-255 chr22 27532917 27533052 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 222333 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 419-141 chr2 75539186 75539512 + 2 NA intron (NM_001369524, intron 2 of 5) intron (NM_001369524, intron 2 of 5) 15281 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 578-175 chr8 84693757 84694246 + 2 NA intron (NM_001354308, intron 3 of 9) L1M2|LINE|L1 -11926 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 349-24 chr1 106415586 106415811 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -387445 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 355-388 chr5 11627917 11628142 + 2 NA intron (NM_001288717, intron 2 of 20) MER1A|DNA|hAT-Charlie -38963 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 278-363 chr6 38056893 38057086 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 237262 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 345-355 chr3 98399876 98400176 + 2 NA Intergenic L1PBb|LINE|L1 9360 NM_001005516 403277 Hs.554709 NM_001005516 ENSG00000206536 OR5K3 - olfactory receptor family 5 subfamily K member 3 protein-coding 555-219 chr9 107720122 107720670 + 2 NA Intergenic Intergenic -230627 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 440-115 chr2 50914836 50915170 + 2 NA intron (NM_001330093, intron 4 of 22) L2a|LINE|L2 117129 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 346-105 chr12 53288422 53288691 + 2 NA exon (NM_012291, exon 20 of 31) exon (NM_012291, exon 20 of 31) -6895 NM_145897 5204 Hs.655327 NM_002624 ENSG00000123349 PFDN5 MM-1|MM1|PFD5 prefoldin subunit 5 protein-coding 329-234 chr18 32532931 32533164 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 21384 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 290-113 chr12 114219859 114220034 + 2 NA Intergenic ORSL|DNA|hAT-Tip100 21824 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 216-197 chr20 46981533 46981700 + 2 NA intron (NM_172110, intron 1 of 13) intron (NM_172110, intron 1 of 13) 86773 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 156-44 chr17 39159820 39159938 + 2 NA intron (NM_001143968, intron 5 of 5) L2a|LINE|L2 6282 NM_001143968 390790 Hs.568007 NM_001143968 ENSG00000141748 ARL5C ARL12 ADP ribosylation factor like GTPase 5C protein-coding 283-56 chr10 63598997 63599209 + 2 NA intron (NM_001001330, intron 4 of 7) intron (NM_001001330, intron 4 of 7) -77213 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 562-36 chr11 81368201 81368586 + 2 NA Intergenic LTR12C|LTR|ERV1 522443 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 260-420 chr8 10467644 10467817 + 2 NA Intergenic AluJo|SINE|Alu -6835 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 626-82 chr20 21042655 21043188 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 63437 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 508-249 chr8 134490920 134491293 + 2 NA intron (NM_001174158, intron 13 of 13) MER20B|DNA|hAT-Charlie -106965 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 431-266 chr7 42668803 42669031 + 2 NA intron (NR_110833, intron 2 of 2) AluSx4|SINE|Alu 37530 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 321-510 chr6 160597115 160597406 + 2 NA intron (NM_005577, intron 20 of 38) L1MEc|LINE|L1 66999 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 328-145 chr14 45500408 45500605 + 2 NA Intergenic L2a|LINE|L2 215096 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 222-70 chr11 83404425 83404575 + 2 NA Intergenic Intergenic -118093 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 339-488 chr6 40000518 40000783 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -66188 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 172-83 chr3 109505223 109505388 + 2 NA Intergenic L1PBa|LINE|L1 95315 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 233-35 chr10 44527480 44527686 + 2 NA Intergenic L1MB5|LINE|L1 -142486 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 254-140 chr16 66180916 66181143 + 2 NA Intergenic L1ME4a|LINE|L1 -185662 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 237-5 chr1 55389738 55389932 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 164194 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 315-56 chr10 62345263 62345572 + 2 NA intron (NR_104162, intron 3 of 3) MSTB1|LTR|ERVL-MaLR -28740 NM_199450 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 424-84 chr15 83104360 83104770 + 2 NA Intergenic Intergenic -3080 NM_001353883 53346 Hs.513094 NM_023003 ENSG00000136404 TM6SF1 - transmembrane 6 superfamily member 1 protein-coding 274-134 chr14 80413064 80413246 + 2 NA intron (NR_038355, intron 8 of 8) L1ME1|LINE|L1 -182098 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 339-225 chr18 6776573 6776787 + 2 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -46818 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 411-249 chr6 35668418 35668689 + 2 NA intron (NM_001145775, intron 2 of 11) intron (NM_001145775, intron 2 of 11) -3764 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 270-382 chr8 72823197 72823354 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 91230 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 632-21 chr12 34410778 34411366 + 2 NA Intergenic ALR/Alpha|Satellite|centr 388576 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 240-143 chr14 75668236 75668435 + 2 NA intron (NM_015072, intron 2 of 31) MIRb|SINE|MIR 7089 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 166-41 chr18 5917254 5917407 + 2 NA Intergenic L2c|LINE|L2 -21376 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 189-160 chr5 42338085 42338250 + 2 NA Intergenic L1MA4A|LINE|L1 -85272 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 736-54 chr3 94285369 94286010 + 2 NA Intergenic Intergenic 222628 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 338-2 chr1 34730990 34731161 + 2 NA Intergenic L2a|LINE|L2 -23972 NM_005268 2709 Hs.198249 NM_005268 ENSG00000189280 GJB5 CX31.1 gap junction protein beta 5 protein-coding 151-92 chr9 26155465 26155576 + 2 NA Intergenic Intergenic 88845 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 251-17 chr1 183457876 183458059 + 2 NA Intergenic AluSx|SINE|Alu 14015 NR_040063 284649 Hs.127384 NR_040063 ENSG00000232860 SMG7-AS1 DKFZP564C196 SMG7 antisense RNA 1 ncRNA 368-104 chr12 40082963 40083299 + 2 NA intron (NM_052885, intron 1 of 9) L1MEf|LINE|L1 22950 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 193-176 chr6 104235965 104236105 + 2 NA Intergenic Intergenic 623511 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 181-46 chr15 25043363 25043504 + 2 NA intron (NR_146177, intron 23 of 147) L1MB7|LINE|L1 1459 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 286-35 chr10 28228268 28228522 + 2 NA intron (NR_134517, intron 2 of 16) Charlie25|DNA|hAT-Charlie 53728 NM_173496 143098 Hs.499159 NM_173496 ENSG00000150054 MPP7 - membrane palmitoylated protein 7 protein-coding 604-175 chr9 114738983 114739451 + 2 NA Intergenic Intergenic 53313 NM_001204344 9966 Hs.23349 NM_005118 ENSG00000181634 TNFSF15 TL1|TL1A|TNLG1B|VEGI|VEGI192A TNF superfamily member 15 protein-coding 314-358 chr3 5147728 5147923 + 2 NA intron (NM_018184, intron 1 of 6) HERVP71A-int|LTR|ERV1 25533 NM_018184 55207 Hs.250009 NM_018184 ENSG00000134108 ARL8B ARL10C|Gie1 ADP ribosylation factor like GTPase 8B protein-coding 297-162 chr16 59862293 59862445 + 2 NA intron (NR_110917, intron 1 of 3) (TA)n|Simple_repeat|Simple_repeat 7016 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 285-12 chr1 101534682 101534859 + 2 NA Intergenic Intergenic 210933 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 920-13 chr15 97872964 97873531 + 2 NA intron (NR_024172, intron 1 of 2) MIRb|SINE|MIR 1182 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 208-164 chr3 59229097 59229243 + 2 NA Intergenic Intergenic -179138 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 224-16 chr1 184543664 184543811 + 2 NA intron (NM_030806, intron 3 of 5) intron (NM_030806, intron 3 of 5) 156708 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 319-259 chr2 135496662 135496833 + 2 NA intron (NM_001286569, intron 2 of 21) intron (NM_001286569, intron 2 of 21) 33838 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 287-53 chr10 56288355 56288547 + 2 NA Intergenic L1M2|LINE|L1 72808 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 383-218 chr20 7919189 7919446 + 2 NA intron (NM_017545, intron 2 of 7) intron (NM_017545, intron 2 of 7) 21141 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 517 chr1 14953571 14953925 + 2 NA intron (NM_001017999, intron 1 of 7) intron (NM_001017999, intron 1 of 7) 7829 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 328-535 chr7 54442079 54442375 + 2 NA Intergenic L1MD1|LINE|L1 -100098 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 307-528 chrX 27919286 27919473 + 2 NA Intergenic MER67C|LTR|ERV1 62070 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 392-44 chr11 112715380 112715633 + 2 NA Intergenic L1ME1|LINE|L1 -159704 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 370-222 chr2 42081263 42081507 + 2 NA Intergenic L1ME4b|LINE|L1 33364 NM_138370 91461 Hs.408542 NM_138370 ENSG00000162878 PKDCC SGK493|Vlk protein kinase domain containing, cytoplasmic protein-coding 228-216 chr3 86011793 86011964 + 2 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -183828 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 383-295 chr4 144566166 144566503 + 2 NA Intergenic Intergenic 79685 NR_037595 646576 Hs.632595 NR_037595 ENSG00000248890 HHIP-AS1 - HHIP antisense RNA 1 ncRNA 669-72 chr3 43337308 43337789 + 2 NA intron (NM_001100594, intron 3 of 5) AluJo|SINE|Alu 14414 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 425-37 chr10 53197226 53197501 + 2 NA Intergenic L1MB1|LINE|L1 -425663 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 227-144 chr18 38868401 38868555 + 2 NA Intergenic Intergenic 753697 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 279-192 chr2 116658900 116659143 + 2 NA Intergenic L1M1|LINE|L1 -1155670 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 528-227 chr6 66480021 66480403 + 2 NA Intergenic HERVL18-int|LTR|ERVL 692333 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 245-173 chr19 10993884 10994069 + 2 NA intron (NM_001128845, intron 7 of 32) intron (NM_001128845, intron 7 of 32) 9824 NM_001128846 6597 Hs.327527 NM_003072 ENSG00000127616 SMARCA4 BAF190|BAF190A|BRG1|CSS4|MRD16|RTPS2|SNF2|SNF2L4|SNF2LB|SWI2|hSNF2b SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 protein-coding 183-80 chr2 128557866 128558013 + 2 NA Intergenic L1ME4a|LINE|L1 -239071 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 260-292 chr3 161581220 161581363 + 2 NA Intergenic Intergenic 84483 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 469-101 chr16 34667966 34668262 + 2 NA Intergenic Intergenic -286634 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 614-109 chr6 83368617 83369084 + 2 NA intron (NM_002395, intron 3 of 13) intron (NM_002395, intron 3 of 13) 62201 NM_002395 4199 Hs.21160 NM_002395 ENSG00000065833 ME1 HUMNDME|MES malic enzyme 1 protein-coding 256-157 chr17 14575528 14575698 + 2 NA Intergenic Intergenic 271873 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 520-9 chr1 78339852 78340201 + 2 NA intron (NR_027310, intron 3 of 5) intron (NR_027310, intron 3 of 5) 110427 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 358-410 chr6 82677221 82677523 + 2 NA Intergenic Intergenic 313128 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 398-204 chr3 60658073 60658323 + 2 NA intron (NM_001320900, intron 5 of 9) L1MB3|LINE|L1 -40328 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 407-266 chr5 165589079 165589387 + 2 NA Intergenic Intergenic 1118954 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 230-149 chr17 61252639 61252805 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 114982 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 247-227 chr2 240515149 240515319 + 2 NA intron (NM_017844, intron 7 of 13) LOR1-int|LTR|ERV1 42754 NM_017844 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 297-152 chr15 91417749 91417915 + 2 NA Intergenic L1MA3|LINE|L1 -45507 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 165-134 chr8 129983054 129983161 + 2 NA intron (NM_001353245, intron 1 of 13) AluJo|SINE|Alu 25346 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 518-31 chr10 57845340 57845663 + 2 NA Intergenic Intergenic 422393 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 367-173 chr17_KI270729v1_random 24641 24973 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 173-6 chr1 153341199 153341359 + 2 NA intron (NM_020393, intron 6 of 8) L2a|LINE|L2 7562 NM_020393 57115 Hs.58356 NM_020393 ENSG00000163218 PGLYRP4 PGLYRPIbeta|PGRP-Ibeta|PGRPIB|SBBI67 peptidoglycan recognition protein 4 protein-coding 242-96 chr13 82347060 82347248 + 2 NA Intergenic Intergenic -1120171 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 172-33 chr14 33197652 33197784 + 2 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 258839 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 331-236 chr19 34958045 34958279 + 2 NA exon (NM_175872, exon 4 of 4) exon (NM_175872, exon 4 of 4) 6067 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 324-35 chr1 197348950 197349122 + 2 NA intron (NM_001257966, intron 4 of 9) Tigger3b|DNA|TcMar-Tigger 80784 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 348-390 chr5 10072640 10072958 + 2 NA Intergenic LTR82A|LTR|ERVL -168975 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 623-94 chr4 87541739 87542301 + 2 NA Intergenic L2c|LINE|L2 -12517 NM_001291977 8404 Hs.62886 NM_004684 ENSG00000152583 SPARCL1 MAST 9|MAST9|PIG33|SC1 SPARC like 1 protein-coding 350-50 chr10 69603898 69604085 + 2 NA Intergenic L1MD1|LINE|L1 -26256 NM_145306 219738 Hs.522992 NM_145306 ENSG00000171224 FAM241B C10orf35 family with sequence similarity 241 member B protein-coding 550-69 chr14 38628351 38628834 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -254004 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 560-142 chr5 159488992 159489387 + 2 NA Intergenic MER117|DNA|hAT-Charlie -22913 NR_027110 285627 Hs.552766 NR_027110 ENSG00000253298 LINC01845 - long intergenic non-protein coding RNA 1845 ncRNA 147-11 chr11 125850921 125850994 + 2 NA Intergenic Intergenic 17641 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 262-233 chr2 188561133 188561326 + 2 NA intron (NM_016315, intron 7 of 11) L1MA4A|LINE|L1 228894 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 527-259 chr8 59350035 59350410 + 2 NA Intergenic L1PA16|LINE|L1 231012 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 287-56 chr10 63058664 63058924 + 2 NA Intergenic AluSp|SINE|Alu -74453 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 354-482 chr8 134665477 134665684 + 2 NA intron (NM_020863, intron 1 of 15) intron (NM_020863, intron 1 of 15) 30975 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 314-578 chr8 112407188 112407401 + 2 NA intron (NM_001363185, intron 30 of 66) intron (NM_001363185, intron 30 of 66) -236199 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 209-261 chr5 145253462 145253608 + 2 NA Intergenic Intergenic 581807 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 233-87 chr14 26016721 26016915 + 2 NA Intergenic Intergenic 536612 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 371-330 chr6 17133926 17134289 + 2 NA Intergenic L1PA16|LINE|L1 31849 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 302-501 chrX 96483364 96483601 + 2 NA Intergenic Intergenic -145580 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 324-539 chr8 104996547 104996768 + 2 NA Intergenic Intergenic -321781 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 421-303 chr8 103892153 103892503 + 2 NA intron (NM_001282881, intron 2 of 20) AluJo|SINE|Alu 73108 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 351-379 chr5 41976059 41976280 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 50888 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 302-113 chr13 57056713 57057006 + 2 NA Intergenic Intergenic -84059 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 572-81 chr2 7299878 7300255 + 2 NA Intergenic Intergenic -121195 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 256-230 chr2 240087075 240087270 + 2 NA Intergenic L1MEd|LINE|L1 -41100 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 453-118 chr2 100299664 100299942 + 2 NA exon (NM_198461, exon 5 of 12) exon (NM_198461, exon 5 of 12) 22930 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 348-424 chr5 114773415 114773632 + 2 NA promoter-TSS (NR_130785) promoter-TSS (NR_130785) -110 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 812-39 chr5 84711169 84711760 + 2 NA Intergenic L1M4|LINE|L1 -326584 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 333-365 chr3 119153553 119153738 + 2 NA Intergenic L1MA4|LINE|L1 7480 NM_152539 152405 Hs.730099 NM_152539 ENSG00000163424 TEX55 C3orf30|TSCPA testis expressed 55 protein-coding 508-175 chr4 104552207 104552564 + 2 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -57491 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 423-151 chr20 16177452 16177724 + 2 NA Intergenic Intergenic -191706 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 182-144 chr6 2703307 2703477 + 2 NA intron (NM_001012418, intron 2 of 12) intron (NM_001012418, intron 2 of 12) 47530 NM_001012418 340156 Hs.127830 NM_001012418 ENSG00000145949 MYLK4 SgK085 myosin light chain kinase family member 4 protein-coding 206-135 chr2 204669119 204669263 + 2 NA intron (NM_205863, intron 1 of 21) intron (NM_205863, intron 1 of 21) 123716 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 492-55 chr12 13707073 13707402 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 273119 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 213-298 chr9 29556805 29556938 + 2 NA Intergenic Intergenic -343270 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 377-256 chr21 22817336 22817576 + 2 NA Intergenic Intergenic -261828 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 301-36 chr10 34176298 34176483 + 2 NA intron (NM_001184789, intron 20 of 22) intron (NM_001184789, intron 20 of 22) -403710 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 316-260 chr2 58695759 58695939 + 2 NA intron (NR_033873, intron 2 of 13) L1M6|LINE|L1 175096 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 408-182 chr20 3516198 3516445 + 2 NA intron (NM_001323332, intron 1 of 25) L2|LINE|L2 45303 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 452-167 chr3 74073629 74074048 + 2 NA Intergenic Intergenic 264594 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 401-140 chr19 2874794 2875076 + 2 NA intron (NM_001300843, intron 2 of 3) intron (NM_001300843, intron 2 of 3) 7600 NR_145838 80032 Hs.287433 NM_024967 ENSG00000172000 ZNF556 - zinc finger protein 556 protein-coding 176-61 chr2 113085904 113086034 + 2 NA Intergenic Intergenic 13651 NM_032556 84639 Hs.306974 NM_032556 ENSG00000136697 IL1F10 FIL1-theta|FKSG75|IL-1HY2|IL-38|IL1-theta|IL1HY2 interleukin 1 family member 10 protein-coding 264-151 chr16 19333538 19333711 + 2 NA Intergenic MIR|SINE|MIR 47893 NM_001256720 728276 Hs.632180 NM_001256720 ENSG00000261210 CLEC19A - C-type lectin domain containing 19A protein-coding 307-369 chr5 8473915 8474186 + 2 NA Intergenic MER52-int|LTR|ERV1 13125 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 582-143 chr7 46495242 46495782 + 2 NA Intergenic L1MC1|LINE|L1 201610 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 273-446 chr8 71074748 71074917 + 2 NA Intergenic L1MA7|LINE|L1 281874 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 286-213 chr2 114134386 114134538 + 2 NA Intergenic MIR3|SINE|MIR -154478 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 481-274 chr7 34697171 34697490 + 2 NA intron (NM_001300934, intron 2 of 6) L1MEg|LINE|L1 39091 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 417-218 chr5 45984086 45984397 + 2 NA Intergenic ALR/Alpha|Satellite|centr -287861 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 239-254 chr3 124279423 124279603 + 2 NA intron (NM_001024660, intron 5 of 59) intron (NM_001024660, intron 5 of 59) -94819 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 431-305 chr8 131600410 131600748 + 2 NA Intergenic L1PA7|LINE|L1 -303514 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 313-207 chr17 79901767 79901943 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -17502 NR_110851 101928738 Hs.399280 NR_110851 ENSG00000262188 LINC01978 - long intergenic non-protein coding RNA 1978 ncRNA 208-14 chr1 176274410 176274568 + 2 NA Intergenic L1MD2|LINE|L1 -67203 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 271-225 chr2 234181317 234181515 + 2 NA Intergenic L2a|LINE|L2 130714 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 407-108 chr17 49569132 49569454 + 2 NA intron (NR_103773, intron 1 of 2) L1M4b|LINE|L1 4771 NR_103773 100288866 Hs.720309 NR_103773 ENSG00000249906 LOC100288866 - uncharacterized LOC100288866 ncRNA 366-331 chr4 167735420 167735737 + 2 NA Intergenic Intergenic -356959 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 640-96 chr4 87243123 87243559 + 2 NA Intergenic AluJb|SINE|Alu -22723 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 383-234 chr21 32863191 32863479 + 2 NA Intergenic Intergenic -49632 NM_019596 56245 Hs.517235 NM_019596 ENSG00000205929 C21orf62 B37|C21orf120|PRED81 chromosome 21 open reading frame 62 protein-coding 392-82 chr14 47016258 47016576 + 2 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) 326829 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 302-399 chr7 6358904 6359189 + 2 NA Intergenic Intergenic -10079 NM_001037163 84792 Hs.696146 NM_001037163 ENSG00000286075 FAM220A ACPIN1|C7orf70|SIPAR family with sequence similarity 220 member A protein-coding 332-595 chrX 110756778 110756960 + 2 NA intron (NR_159734, intron 4 of 12) L1MEi|LINE|L1 38948 NM_001367208 91851 Hs.496587 NM_145234 ENSG00000101938 CHRDL1 CHL|MGC1|MGCN|NRLN1|VOPT|dA141H5.1 chordin like 1 protein-coding 322-158 chr14 78474792 78475025 + 2 NA intron (NM_004796, intron 1 of 16) MER5A|DNA|hAT-Charlie 71189 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 348-574 chrX 128367362 128367664 + 2 NA Intergenic Intergenic -315110 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 291-211 chr2 53993685 53993887 + 2 NA intron (NM_001320587, intron 2 of 5) intron (NM_001320587, intron 2 of 5) 22673 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 245-112 chr13 58618345 58618570 + 2 NA Intergenic Intergenic -385340 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 433-157 chr20 61674659 61674875 + 2 NA intron (NM_001252339, intron 1 of 14) MER33|DNA|hAT-Charlie 44981 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 513-7 chr1 95499553 95499894 + 2 NA Intergenic Intergenic -10393 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 328-71 chr10 132288567 132288762 + 2 NA intron (NM_001318878, intron 1 of 11) L1M5|LINE|L1 18558 NM_001318879 282974 Hs.469002 NM_173575 ENSG00000165752 STK32C PKE|YANK3 serine/threonine kinase 32C protein-coding 296-79 chr11 98238261 98238507 + 2 NA Intergenic L1PA17|LINE|L1 -782565 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 204-106 chr15 92766152 92766268 + 2 NA Intergenic MER57A-int|LTR|ERV1 -29274 NR_033769 728619 Hs.684129 NR_033769 ASB9P1 - ankyrin repeat and SOCS box containing 9 pseudogene 1 pseudo 366-283 chr3 116383468 116383799 + 2 NA intron (NM_001318915, intron 1 of 8) intron (NM_001318915, intron 1 of 8) 23609 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 291-351 chr5 58859580 58859758 + 2 NA TTS (NM_001317915) TTS (NM_001317915) 140229 NM_001197223 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 326-313 chr22 28492631 28492828 + 2 NA intron (NM_001145418, intron 2 of 22) L1PA4|LINE|L1 32860 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 467-305 chrX 79722210 79722606 + 2 NA Intergenic MER50-int|LTR|ERV1 -292345 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 281-49 chr10 101256496 101256683 + 2 NA intron (NR_120621, intron 2 of 2) intron (NR_120621, intron 2 of 2) 6961 NR_120621 101927419 Hs.638503 NR_120621 ENSG00000229649 LINC02681 - long intergenic non-protein coding RNA 2681 ncRNA 501-69 chr14 68346033 68346362 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 282590 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 289-9 chr1 84850825 84851023 + 2 NA intron (NM_012152, intron 2 of 2) intron (NM_012152, intron 2 of 2) 42282 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 237-380 chr8 104623356 104623559 + 2 NA Intergenic L1P4|LINE|L1 -34433 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 440-253 chr8 120730673 120730923 + 2 NA intron (NM_021021, intron 1 of 6) MIRb|SINE|MIR -30455 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 446-158 chr2 149105751 149106063 + 2 NA intron (NM_001317004, intron 1 of 6) L1ME1|LINE|L1 -12267 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 239-309 chr5 31971579 31971733 + 2 NA intron (NM_178140, intron 2 of 24) L2a|LINE|L2 -35497 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 403-322 chr9 32128252 32128578 + 2 NA Intergenic L1PA10|LINE|L1 -256188 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 383-389 chr8 118512959 118513180 + 2 NA intron (NM_001101676, intron 2 of 4) L2c|LINE|L2 -107932 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 341-337 chr3 85983693 85983944 + 2 NA intron (NM_001256502, intron 9 of 10) (TATC)n|Simple_repeat|Simple_repeat -155768 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 229-397 chr8 119995004 119995142 + 2 NA intron (NM_022783, intron 4 of 8) intron (NM_022783, intron 4 of 8) 121351 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 116-18 chr2 14265600 14265664 + 2 NA intron (NR_103814, intron 2 of 3) (AT)n|Simple_repeat|Simple_repeat 135326 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 138-62 chr5 2612710 2612799 + 2 NA Intergenic Intergenic -99837 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 424-196 chr4 95944578 95944936 + 2 NA Intergenic Intergenic 104664 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 320-277 chr2 133651844 133652135 + 2 NA Intergenic Intergenic -83526 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 238-57 chr10 123386975 123387182 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 232676 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 242-214 chr20 24170094 24170272 + 2 NA Intergenic L1MD1|LINE|L1 -29584 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 267-80 chr12 16243600 16243847 + 2 NA intron (NM_001170798, intron 4 of 8) MIR3|SINE|MIR 33962 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 481-160 chr2 185943436 185943767 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 142716 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 459-66 chr12 83245828 83246223 + 2 NA Intergenic L1P4e|LINE|L1 558870 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 392-230 chr4 67389503 67389814 + 2 NA Intergenic Intergenic 32342 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 313-423 chr5 35376982 35377227 + 2 NA Intergenic Intergenic -146617 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 246-154 chr17 58081070 58081297 + 2 NA non-coding (NR_110809, exon 2 of 3) non-coding (NR_110809, exon 2 of 3) 2021 NR_110809 101927666 Hs.552237 NR_110809 ENSG00000266290 LOC101927666 - uncharacterized LOC101927666 ncRNA 213-90 chr14 73931018 73931164 + 2 NA intron (NM_001242928, intron 12 of 12) intron (NM_001242928, intron 12 of 12) -18843 NM_182480 51004 Hs.131555 NM_182476 ENSG00000119723 COQ6 CGI-10|CGI10|COQ10D6 coenzyme Q6, monooxygenase protein-coding 235-152 chr19 45985465 45985677 + 2 NA Intergenic Intergenic -9896 NM_001267723 729440 Hs.515479 NM_001080402 ENSG00000104983 CCDC61 - coiled-coil domain containing 61 protein-coding 425-285 chr7 53720746 53721097 + 2 NA intron (NR_038371, intron 4 of 5) intron (NR_038371, intron 4 of 5) 91010 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 407-8 chr1 114441941 114442267 + 2 NA intron (NM_015906, intron 4 of 19) intron (NM_015906, intron 4 of 19) 69099 NM_015906 51592 Hs.26837 NM_015906 ENSG00000197323 TRIM33 ECTO|PTC7|RFG7|TF1G|TIF1G|TIF1GAMMA|TIFGAMMA tripartite motif containing 33 protein-coding 272-399 chr6 137089727 137089937 + 2 NA Intergenic Intergenic -44652 NM_001278723 53832 Hs.445868 NM_014432 ENSG00000016402 IL20RA CRF2-8|IL-20R-alpha|IL-20R1|IL-20RA interleukin 20 receptor subunit alpha protein-coding 305-309 chr20 44127136 44127355 + 2 NA intron (NM_020433, intron 2 of 5) L1MB7|LINE|L1 59943 NM_175913 57158 Hs.441737 NM_020433 ENSG00000149596 JPH2 CMH17|JP-2|JP2 junctophilin 2 protein-coding 172-143 chr8 137970504 137970632 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 112977 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 455-247 chr6 121225058 121225404 + 2 NA intron (NR_104452, intron 20 of 35) intron (NR_104452, intron 20 of 35) 109249 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 271-446 chr8 93006058 93006284 + 2 NA Intergenic L1PA10|LINE|L1 -23580 NR_107051 102467005 NR_107051 ENSG00000277063 MIR8084 hsa-mir-8084 microRNA 8084 ncRNA 365-127 chr15 17076262 17076608 + 2 NA Intergenic ALR/Alpha|Satellite|centr -3206309 NR_038836 646096 Hs.448789 NR_038836 ENSG00000259156 CHEK2P2 - checkpoint kinase 2 pseudogene 2 pseudo 257-354 chr6 64351265 64351446 + 2 NA intron (NM_001292009, intron 29 of 43) intron (NM_001292009, intron 29 of 43) 544519 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 381-12 chr1 118348019 118348304 + 2 NA Intergenic G-rich|Low_complexity|Low_complexity -162933 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 185-174 chr5 142032855 142033034 + 2 NA Intergenic Intergenic -19917 NM_005471 10007 Hs.633853 NM_005471 ENSG00000113552 GNPDA1 GNP1|GNPDA|GNPI|GPI|HLN glucosamine-6-phosphate deaminase 1 protein-coding 175-101 chr3 63221442 63221589 + 2 NA Intergenic Intergenic -56793 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 241-255 chr3 191103789 191103939 + 2 NA Intergenic HERVL40-int|LTR|ERVL -95377 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 354-373 chr5 55230371 55230723 + 2 NA TTS (NM_021147) TTS (NM_021147) 2444 NR_125348 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 224-151 chr2 114460211 114460375 + 2 NA intron (NM_001321910, intron 1 of 26) intron (NM_001321910, intron 1 of 26) -1284 NM_001321911 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 252-346 chr5 118543782 118544009 + 2 NA intron (NR_104610, intron 1 of 9) (TA)n|Simple_repeat|Simple_repeat 18222 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 305-473 chr6 63126350 63126562 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 193521 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 319-119 chr12 126666311 126666505 + 2 NA intron (NR_110034, intron 1 of 2) L2b|LINE|L2 23910 NR_110035 100996671 Hs.121392 NR_110034 ENSG00000256732 LOC100996671 - uncharacterized LOC100996671 ncRNA 396-122 chr16 28024173 28024451 + 2 NA intron (NM_001109763, intron 1 of 6) intron (NM_001109763, intron 1 of 6) 39402 NM_001109763 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 318-265 chr2 64604543 64604812 + 2 NA Intergenic L2a|LINE|L2 -2635 NR_034023 339807 Hs.434736 NR_034023 ENSG00000233694 LINC02579 - long intergenic non-protein coding RNA 2579 ncRNA 306-110 chr12 86185061 86185285 + 2 NA intron (NM_001351286, intron 4 of 7) LTR54|LTR|ERV1 71218 NR_147093 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 377-342 chr5 180872918 180873199 + 2 NA Intergenic Intergenic -11772 NM_001172638 643836 Hs.509227 NM_152283 ENSG00000196670 ZFP62 ZET|ZNF755 ZFP62 zinc finger protein protein-coding 230-12 chr1 84124838 84124991 + 2 NA intron (NM_002731, intron 1 of 9) intron (NM_002731, intron 1 of 9) -19357 NM_001300916 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 414-274 chr5 152339017 152339368 + 2 NA Intergenic Intergenic 66087 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 346-180 chr16 75407694 75407972 + 2 NA intron (NM_006324, intron 4 of 6) AluJb|SINE|Alu 25670 NM_006324 10428 Hs.461361 NM_006324 ENSG00000153774 CFDP1 BCNT|BUCENTAUR|CENP-29|CP27|SWC5|Yeti|p97 craniofacial development protein 1 protein-coding 114-34 chr21 20004362 20004431 + 2 NA Intergenic Intergenic -104641 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 561-3 chr1 49676716 49677123 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -204834 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 235-263 chr4 100440621 100440784 + 2 NA intron (NM_001159694, intron 4 of 10) L1PB3|LINE|L1 -45455 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 166-18 chr12 87745004 87745152 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -23734 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 187-152 chr7 15339743 15339867 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) 222210 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 236-309 chr6 103331381 103331539 + 2 NA Intergenic Intergenic 1528086 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 253-76 chr11 58039954 58040139 + 2 NA intron (NM_001005212, intron 1 of 2) MIR|SINE|MIR 9093 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 297-434 chr7 46544077 46544353 + 2 NA Intergenic MER49|LTR|ERV1 152907 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 231-93 chr14 60208688 60208841 + 2 NA Intergenic Intergenic -36986 NM_177952 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 812-55 chr8 126300570 126301126 + 2 NA Intergenic Intergenic -24647 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 281-236 chr2 172464751 172464929 + 2 NA intron (NR_157573, intron 1 of 1) intron (NR_157573, intron 1 of 1) 1182 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 279-123 chr15 97401897 97402130 + 2 NA intron (NR_120324, intron 3 of 4) intron (NR_120324, intron 3 of 4) 119798 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 151-41 chr2 150809069 150809167 + 2 NA Intergenic Intergenic 180221 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 257-174 chr2 13990330 13990504 + 2 NA Intergenic L1M3c|LINE|L1 410541 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 238-37 chr10 37318164 37318385 + 2 NA intron (NR_104061, intron 3 of 4) MLT1E2|LTR|ERVL-MaLR 9088 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 162-55 chr2 62217985 62218109 + 2 NA intron (NM_001319075, intron 1 of 1) intron (NM_001319075, intron 1 of 1) 2526 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 302-272 chr22 49596616 49596846 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -53265 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 271-264 chr3 59796799 59797007 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -138406 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 323-310 chr22 33115486 33115784 + 2 NA intron (NR_134617, intron 3 of 3) AluSc|SINE|Alu 7106 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 511-168 chr3 34998209 34998652 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 395593 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 162-37 chr15 33532429 33532525 + 2 NA intron (NM_001243996, intron 4 of 102) L1ME4c|LINE|L1 221510 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 129-68 chr5 123307211 123307313 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 116330 NM_001166226 153241 Hs.483209 NM_153223 ENSG00000168944 CEP120 CCDC100|JBTS31|SRTD13 centrosomal protein 120 protein-coding 349-427 chr5 120103458 120103719 + 2 NA Intergenic L1MA5|LINE|L1 -360690 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 247-165 chr18 11346434 11346588 + 2 NA Intergenic L1MCa|LINE|L1 -107967 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 345-276 chr2 118038217 118038454 + 2 NA Intergenic Intergenic -24265 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 864-21 chr2 132258397 132258900 + 2 NA promoter-TSS (NR_027020) promoter-TSS (NR_027020) -615 NR_152415 554226 Hs.380689 NM_001358416 ENSG00000163046 ANKRD30BL ANKRD30BP3|NCRNA00164 ankyrin repeat domain 30B like protein-coding 248-428 chr9 36955277 36955508 + 2 NA intron (NR_104000, intron 6 of 9) intron (NR_104000, intron 6 of 9) -61861 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 445-27 chr10 65080265 65080584 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -155906 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 258-137 chr14 98270746 98270957 + 2 NA Intergenic Intergenic -292727 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 345-230 chr18 75408557 75408819 + 2 NA TTS (NM_001037331) TTS (NM_001037331) 19015 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 529-28 chr11 26232211 26232608 + 2 NA intron (NM_001313726, intron 1 of 27) MLT1K|LTR|ERVL-MaLR 43286 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 364-432 chr8 48311585 48311824 + 2 NA Intergenic L1MA9|LINE|L1 -239863 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 309-75 chr11 25115805 25116030 + 2 NA Intergenic Intergenic 618864 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 257-251 chr22 19345049 19345219 + 2 NA intron (NM_003325, intron 24 of 24) L1M3|LINE|L1 -53415 NM_007098 8218 Hs.368266 NM_001835 ENSG00000070371 CLTCL1 CHC22|CLH22|CLTCL|CLTD clathrin heavy chain like 1 protein-coding 488-237 chr6 91817585 91817959 + 2 NA Intergenic Eulor5A|DNA?|DNA? -127344 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 448-165 chr3 105302509 105302946 + 2 NA Intergenic L1MCc|LINE|L1 -63986 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 482-166 chr3 95078370 95078808 + 2 NA Intergenic Intergenic 140326 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 190-10 chr1 226319416 226319564 + 2 NA Intergenic L1MB3|LINE|L1 -9723 NM_001270410 286826 Hs.120817 NM_173083 ENSG00000183814 LIN9 BARA|BARPsv|Lin-9|TGS|TGS1|TGS2 lin-9 DREAM MuvB core complex component protein-coding 270-325 chr6 24149195 24149380 + 2 NA Intergenic MIR|SINE|MIR 23072 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 530-194 chr5 40414195 40414613 + 2 NA Intergenic Intergenic -265511 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 358-330 chr4 44283340 44283616 + 2 NA intron (NM_198353, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 165331 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 594-83 chr2 232100327 232100767 + 2 NA intron (NR_046477, intron 6 of 18) L1M5|LINE|L1 -72106 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 356-35 chr1 239743099 239743318 + 2 NA intron (NM_000740, intron 3 of 4) intron (NM_000740, intron 3 of 4) -24089 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 404-18 chr1 116318549 116318867 + 2 NA Intergenic Intergenic -54536 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 196-78 chr14 75124044 75124201 + 2 NA exon (NM_001329237, exon 2 of 22) exon (NM_001329237, exon 2 of 22) 2926 NM_033116 91754 Hs.7200 NM_033116 ENSG00000119638 NEK9 APUG|LCCS10|NC|NERCC|NERCC1 NIMA related kinase 9 protein-coding 217-246 chr3 189375466 189375671 + 2 NA Intergenic L1MC1|LINE|L1 -134974 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 362-171 chr15 92024296 92024570 + 2 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 170129 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 156-60 chr20 20457709 20457863 + 2 NA intron (NM_020343, intron 37 of 39) intron (NM_020343, intron 37 of 39) 89682 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 298-64 chr10 125326057 125326245 + 2 NA Intergenic L2a|LINE|L2 -165121 NM_001083914 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 299-142 chr14 81708630 81708862 + 2 NA Intergenic Intergenic 34392 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 438-203 chr4 129285930 129286287 + 2 NA Intergenic Intergenic 189956 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 238-277 chr4 134207411 134207577 + 2 NA Intergenic HERVL40-int|LTR|ERVL -5705 NM_001363585 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 178-137 chr7 103590725 103590818 + 2 NA intron (NM_005045, intron 27 of 64) intron (NM_005045, intron 27 of 64) -144564 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 715-94 chr9 76210554 76211136 + 2 NA intron (NM_001190482, intron 20 of 36) L2a|LINE|L2 183581 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 199-163 chr3 89265458 89265576 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 157896 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 649-39 chr17 72818084 72818584 + 2 NA intron (NM_001352692, intron 6 of 9) L3|LINE|CR1 -177862 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 317-509 chr8 134441580 134441797 + 2 NA Intergenic L1PREC2|LINE|L1 -156383 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 376-184 chr2 63095552 63095921 + 2 NA Intergenic L1MEf|LINE|L1 23806 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 579-11 chr1 238071260 238071644 + 2 NA Intergenic Intergenic -180530 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 209-328 chr8 101952947 101953096 + 2 NA intron (NM_001040624, intron 3 of 7) intron (NM_001040624, intron 3 of 7) -31411 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 276-445 chr8 67982597 67982829 + 2 NA intron (NM_024870, intron 1 of 39) intron (NM_024870, intron 1 of 39) 30667 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 194-22 chr10 41749221 41749379 + 2 NA Intergenic ALR/Alpha|Satellite|centr 618745 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 255-277 chr3 180138904 180139108 + 2 NA Intergenic Intergenic -102069 NM_001256750 51555 Hs.235331 NM_016559 ENSG00000114757 PEX5L PEX5R|PEX5RP|PXR2|PXR2B|TRIP8b peroxisomal biogenesis factor 5 like protein-coding 391-235 chr3 105642447 105642730 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 225003 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 669-38 chr17 52441030 52441512 + 2 NA intron (NR_146898, intron 1 of 3) L1PREC2|LINE|L1 50749 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 357-485 chr9 85355252 85355563 + 2 NA Intergenic L1PB2|LINE|L1 386622 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 306-462 chr7 33167022 33167239 + 2 NA intron (NM_198428, intron 4 of 22) MER57A-int|LTR|ERV1 37566 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 241-99 chr13 107082758 107082983 + 2 NA Intergenic Intergenic 238093 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 430-23 chr10 11518736 11519131 + 2 NA intron (NM_014688, intron 4 of 14) MER3|DNA|hAT-Charlie 13347 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 267-329 chr5 56365853 56366039 + 2 NA Intergenic Intergenic 115823 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 390-406 chr9 7999340 7999647 + 2 NA Intergenic Intergenic -199715 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 479-114 chr2 180087457 180087883 + 2 NA Intergenic L1M5|LINE|L1 -80373 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 124-73 chr9 129543494 129543577 + 2 NA Intergenic L1M5|LINE|L1 54875 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 285-204 chr2 104798341 104798493 + 2 NA Intergenic Intergenic -40698 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 312-45 chr10 57542258 57542555 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -237847 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 278-266 chr3 28874316 28874494 + 2 NA Intergenic L1M1|LINE|L1 299127 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 335-317 chr21 31041434 31041688 + 2 NA Intergenic Intergenic -3085 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 312-96 chr12 17509658 17509852 + 2 NA Intergenic Intergenic 79323 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 304-54 chr10 66596833 66597014 + 2 NA intron (NM_001127384, intron 10 of 17) L1M3c|LINE|L1 -329113 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 455-194 chr4 132286917 132287334 + 2 NA Intergenic MamRep605|LTR?|LTR? -303964 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 297-302 chr3 139638472 139638701 + 2 NA intron (NM_178177, intron 1 of 4) intron (NM_178177, intron 1 of 4) 39386 NM_001320510 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 413-30 chr10 25050167 25050470 + 2 NA intron (NM_001270383, intron 2 of 5) THE1B|LTR|ERVL-MaLR 11961 NM_001270383 219670 Hs.534486 NM_145010 ENSG00000151023 ENKUR C10orf63|CFAP106 enkurin, TRPC channel interacting protein protein-coding 149-62 chr22 47937674 47937776 + 2 NA Intergenic L1MDa|LINE|L1 306051 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 261-280 chr4 63489619 63489852 + 2 NA Intergenic Intergenic 919715 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 351-102 chr12 132568470 132568775 + 2 NA intron (NM_001142641, intron 6 of 16) intron (NM_001142641, intron 6 of 16) -13375 NR_106821 102465975 NR_106821 ENSG00000277052 MIR6763 hsa-mir-6763 microRNA 6763 ncRNA 392-171 chr20 120622 120950 + 2 NA Intergenic HAL1|LINE|L1 -21804 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 271-39 chr10 18685917 18686179 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 26617 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 207-43 chr10 103374556 103374753 + 2 NA intron (NM_139052, intron 2 of 9) intron (NM_139052, intron 2 of 9) 6678 NM_139052 6877 Hs.96103 NM_006951 ENSG00000148835 TAF5 TAF(II)100|TAF2D|TAFII-100|TAFII100 TATA-box binding protein associated factor 5 protein-coding 556-153 chr4 43523469 43523973 + 2 NA Intergenic L1MD|LINE|L1 -31178 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 320-119 chr12 46990358 46990549 + 2 NA Intergenic L1PA16|LINE|L1 -89150 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 304-485 chr7 39832639 39832868 + 2 NA Intergenic Intergenic 99185 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 291-401 chr7 35399616 35399901 + 2 NA Intergenic Tigger9b|DNA|TcMar-Tigger 85903 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 211-37 chr10 75747322 75747494 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) 34953 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 322-58 chr10 44361783 44361968 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 23222 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 626-109 chr5 12567126 12567656 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -7466 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 254-173 chr19 28784980 28785137 + 2 NA Intergenic L1MA9|LINE|L1 -57364 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 239-423 chr8 130377832 130378042 + 2 NA intron (NM_001247996, intron 2 of 30) LTR33|LTR|ERVL 65723 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 374-396 chr8 119369440 119369749 + 2 NA Intergenic L1PA15|LINE|L1 44423 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 274-146 chr15 88932290 88932495 + 2 NA Intergenic Intergenic -19013 NM_001114614 4240 Hs.3745 NM_005928 ENSG00000140545 MFGE8 BA46|EDIL1|HMFG|HsT19888|MFG-E8|MFGM|OAcGD3S|SED1|SPAG10|hP47 milk fat globule-EGF factor 8 protein protein-coding 433-268 chr8 13884472 13884861 + 2 NA Intergenic Intergenic 254976 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 513-231 chr5 130780631 130781026 + 2 NA Intergenic Intergenic 384428 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 210-207 chr4 111932178 111932348 + 2 NA Intergenic MIR|SINE|MIR -213191 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 184 chr1 14570522 14570666 + 2 NA Intergenic L1MB7|LINE|L1 -28091 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 366-81 chr11 71386155 71386513 + 2 NA Intergenic Intergenic 37020 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 342-422 chr5 119375577 119375879 + 2 NA intron (NM_014350, intron 1 of 1) intron (NM_014350, intron 1 of 1) 19709 NM_014350 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 328-417 chr4 110137027 110137192 + 2 NA intron (NM_001130721, intron 2 of 4) intron (NM_001130721, intron 2 of 4) 61506 NM_001130721 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 362-359 chr5 130159933 130160168 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 255585 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 335-301 chr20 45164226 45164546 + 2 NA Intergenic L1M4|LINE|L1 -10516 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 454-130 chr19 29334111 29334506 + 2 NA intron (NR_040029, intron 9 of 9) MLT1I|LTR|ERVL-MaLR -121157 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 539-121 chr2 124646443 124646975 + 2 NA intron (NM_130773, intron 12 of 23) intron (NM_130773, intron 12 of 23) 621422 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 453-243 chr7 16827560 16828003 + 2 NA Intergenic L1M1|LINE|L1 -22782 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 402-249 chr4 132487655 132487946 + 2 NA Intergenic Intergenic -103289 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 434-164 chr20 42642295 42642646 + 2 NA intron (NM_133170, intron 7 of 31) (AAT)n|Simple_repeat|Simple_repeat -43013 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 264-122 chr14 30398798 30398997 + 2 NA Intergenic LTR33|LTR|ERVL -160226 NM_001308097 55632 Hs.509008 NM_017769 ENSG00000092140 G2E3 KIAA1333|PHF7B G2/M-phase specific E3 ubiquitin protein ligase protein-coding 452-219 chr5 144271189 144271556 + 2 NA intron (NM_001370487, intron 2 of 2) L1MB2|LINE|L1 65981 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 494-81 chr15 95607980 95608381 + 2 NA Intergenic Intergenic 175087 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 570-100 chr19 36524918 36525442 + 2 NA 5' UTR (NM_001166037, exon 2 of 3) 5' UTR (NM_001166037, exon 2 of 3) 3091 NM_001012756 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 290-478 chr9 26437982 26438237 + 2 NA Intergenic Intergenic 371434 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 313-432 chr5 64815009 64815308 + 2 NA intron (NM_005869, intron 10 of 13) intron (NM_005869, intron 10 of 13) 46228 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 305-265 chr2 108295893 108296112 + 2 NA intron (NM_001056, intron 3 of 7) AluJr|SINE|Alu 7107 NM_176825 6819 Hs.436123 NM_001056 ENSG00000198203 SULT1C2 ST1C1|ST1C2|SULT1C1|humSULTC2 sulfotransferase family 1C member 2 protein-coding 142-43 chr2 191379417 191379505 + 2 NA intron (NM_012223, intron 13 of 28) intron (NM_012223, intron 13 of 28) 134057 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 313-33 chr1 228236308 228236496 + 2 NA intron (NM_052843, intron 9 of 80) L1MEf|LINE|L1 -22738 NR_073154 574407 Hs.650039 NM_001025495 ENSG00000162913 OBSCN-AS1 C1orf145 OBSCN antisense RNA 1 ncRNA 272-191 chr2 63786763 63786917 + 2 NA Intergenic Intergenic -54124 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 220-308 chr5 166213554 166213724 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 712731 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 615-127 chr7 52699846 52700302 + 2 NA Intergenic Intergenic -335559 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 521-232 chr7 52610711 52611134 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR -424711 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 468-55 chr12 17922309 17922679 + 2 NA Intergenic L1PB4|LINE|L1 167699 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 134-58 chr3 107021984 107022086 + 2 NA Intergenic L1ME4a|LINE|L1 218603 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 221-300 chr8 96660487 96660703 + 2 NA intron (NM_016134, intron 1 of 7) MER5B|DNA|hAT-Charlie 15353 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 178-91 chr3 136068584 136068747 + 2 NA intron (NM_181897, intron 4 of 12) L1MC4a|LINE|L1 45923 NM_181897 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 1003-9 chr19 52118036 52118668 + 2 NA intron (NM_178523, intron 3 of 3) intron (NM_178523, intron 3 of 3) 21586 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 204-288 chr8 106326416 106326607 + 2 NA intron (NM_018002, intron 1 of 15) intron (NM_018002, intron 1 of 15) 56333 NM_018002 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 329-324 chr20 10799465 10799708 + 2 NA Intergenic Intergenic 46496 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 263-121 chr15 85941817 85942022 + 2 NA Intergenic Intergenic 116284 NR_049805 100847084 NR_049805 ENSG00000264406 MIR548AP - microRNA 548ap ncRNA 220-58 chr10 102339560 102339734 + 2 NA intron (NM_001199378, intron 3 of 39) AluSc8|SINE|Alu -54463 NM_001322935 4791 Hs.73090 NM_002502 ENSG00000077150 NFKB2 CVID10|H2TF1|LYT-10|LYT10|NF-kB2|p100|p49/p100|p52 nuclear factor kappa B subunit 2 protein-coding 527-271 chr8 127083142 127083510 + 2 NA non-coding (NR_109833, exon 1 of 1) non-coding (NR_109833, exon 1 of 1) -1105 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 259-380 chr8 43544565 43544786 + 2 NA Intergenic Intergenic 252233 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 285-349 chr5 110041435 110041662 + 2 NA Intergenic L1PA11|LINE|L1 158366 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 328-5 chr1 42860089 42860388 + 2 NA intron (NR_104171, intron 1 of 3) L1M4|LINE|L1 2616 NR_104171 339539 Hs.434301 NR_104171 LOC339539 - uncharacterized LOC339539 ncRNA 305-128 chr12 75103331 75103576 + 2 NA intron (NM_001260499, intron 2 of 3) intron (NM_001260499, intron 2 of 3) 106295 NM_139136 3747 Hs.27214 NM_139136 ENSG00000166006 KCNC2 KV3.2 potassium voltage-gated channel subfamily C member 2 protein-coding 331-505 chr7 68252934 68253220 + 2 NA Intergenic L1MB7|LINE|L1 232824 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 283-449 chr8 138375546 138375750 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 121613 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 498-185 chr4 16809218 16809609 + 2 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 89232 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 373-21 chr1 106311076 106311310 + 2 NA Intergenic Intergenic -282940 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 322-291 chr20 38677918 38678167 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy -46444 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 211-313 chr8 134298343 134298496 + 2 NA Intergenic Intergenic -299652 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 292-153 chr15 84929016 84929200 + 2 NA intron (NM_001287761, intron 11 of 14) MER33|DNA|hAT-Charlie 44446 NM_001321722 9154 Hs.459187 NM_004213 ENSG00000156222 SLC28A1 CNT1|HCNT1 solute carrier family 28 member 1 protein-coding 351-70 chr11 50375303 50375512 + 2 NA Intergenic ALR/Alpha|Satellite|centr -33740 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 416-324 chr8 31765097 31765336 + 2 NA intron (NM_013962, intron 1 of 4) L1MD1|LINE|L1 125464 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 327-433 chr6 40606280 40606549 + 2 NA Intergenic Intergenic -19050 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 392-153 chr2 115771557 115771785 + 2 NA intron (NM_001321912, intron 14 of 25) intron (NM_001321912, intron 14 of 25) 427856 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 211-329 chr9 105776596 105776746 + 2 NA TTS (NM_018112) TTS (NM_018112) 82130 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 427-62 chr13 35580431 35580808 + 2 NA intron (NM_001204197, intron 5 of 17) intron (NM_001204197, intron 5 of 17) 103870 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 483-108 chr2 36692299 36692588 + 2 NA Intergenic Intergenic -4247 NM_001177969 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 580-75 chr2 12224280 12224677 + 2 NA intron (NR_110196, intron 3 of 5) THE1C|LTR|ERVL-MaLR 25348 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 242-275 chr4 97183693 97183858 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -183151 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 461-272 chr8 118296498 118296895 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -184877 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 423-325 chrX 117126094 117126447 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -308410 NR_145523 100126447 Hs.695847 NR_145523 LOC100126447 - uncharacterized LOC100126447 ncRNA 187-120 chr3 162629572 162629700 + 2 NA Intergenic Intergenic 673665 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 190-197 chr9 91187665 91187804 + 2 NA Intergenic Intergenic 68672 NR_135306 100129347 Hs.522287 NR_135306 ENSG00000229694 LINC00484 C9orf73 long intergenic non-protein coding RNA 484 ncRNA 366-304 chr4 45926682 45926920 + 2 NA Intergenic Intergenic 197253 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 541-3 chr1 42737844 42738283 + 2 NA intron (NM_001185117, intron 2 of 2) intron (NM_001185117, intron 2 of 2) 2173 NM_148960 149461 Hs.496270 NM_148960 ENSG00000164007 CLDN19 HOMG5 claudin 19 protein-coding 664-84 chr5 7972248 7972761 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 103356 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 176-140 chr8 82476224 82476373 + 2 NA Intergenic L1MB1|LINE|L1 -435806 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 341-478 chr6 154526117 154526407 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -15577 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 432-283 chr8 33580056 33580470 + 2 NA Intergenic 7SLRNA|srpRNA|srpRNA -13135 NM_024787 79845 Hs.151237 NM_024787 ENSG00000133874 RNF122 - ring finger protein 122 protein-coding 431-107 chr18 3411942 3412220 + 2 NA promoter-TSS (NM_001278686) promoter-TSS (NM_001278686) 154 NM_174886 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 229-235 chr21 24815540 24815733 + 2 NA Intergenic Intergenic -24914 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 287-420 chr8 125708192 125708424 + 2 NA Intergenic L2b|LINE|L2 242889 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 234-348 chr6 140875344 140875520 + 2 NA Intergenic Intergenic 191618 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 342-73 chr10 76781834 76782072 + 2 NA Intergenic L1MC|LINE|L1 -106091 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 257-459 chrX 153041088 153041273 + 2 NA Intergenic L1MA10|LINE|L1 -15290 NM_001282535 29944 Hs.449627 NM_013364 ENSG00000183837 PNMA3 MA3|MA5 PNMA family member 3 protein-coding 355-484 chr8 18563661 18563972 + 2 NA intron (NM_015310, intron 14 of 15) intron (NM_015310, intron 14 of 15) 172534 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 698-42 chr2 201522009 201522562 + 2 NA intron (NM_001168216, intron 11 of 12) L1MA7|LINE|L1 70545 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 482-171 chr3 140803895 140804282 + 2 NA Intergenic L1PB1|LINE|L1 126024 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 340-230 chr19 53236348 53236650 + 2 NA 3' UTR (NM_182609, exon 5 of 5) 3' UTR (NM_182609, exon 5 of 5) 18351 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 563-150 chr5 27695987 27696522 + 2 NA Intergenic L1PB1|LINE|L1 223962 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 226-18 chr1 171680876 171681073 + 2 NA Intergenic AluSz6|SINE|Alu -28286 NM_000261 4653 Hs.436037 NM_000261 ENSG00000034971 MYOC GLC1A|GPOA|JOAG|JOAG1|TIGR myocilin protein-coding 534-185 chr4 188117016 188117434 + 2 NA Intergenic Intergenic -7622 NM_173553 205860 Hs.276429 NM_173553 ENSG00000179046 TRIML2 SPRYD6 tripartite motif family like 2 protein-coding 378-201 chr19 27513878 27514240 + 2 NA Intergenic ALR/Alpha|Satellite|centr -279372 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 451-111 chr2 52096405 52096707 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -274092 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 234-336 chr6 40693577 40693788 + 2 NA Intergenic L2c|LINE|L2 -106318 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 554-167 chr4 187749379 187749924 + 2 NA Intergenic Intergenic -77010 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 326-156 chr14 80344670 80344931 + 2 NA intron (NR_038355, intron 2 of 8) MLT1E2|LTR|ERVL-MaLR -113743 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 324-75 chr10 129180687 129180939 + 2 NA Intergenic Intergenic 267980 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 256-312 chr5 26279002 26279215 + 2 NA Intergenic MIR|SINE|MIR 759478 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 228-290 chr6 63411950 63412149 + 2 NA Intergenic Intergenic -92066 NM_016571 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 544-110 chr2 38237578 38238017 + 2 NA Intergenic AluSz6|SINE|Alu 106692 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 410-212 chr4 36060829 36061198 + 2 NA intron (NR_146893, intron 32 of 36) intron (NR_146893, intron 32 of 36) 182926 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 656-15 chr1 242080869 242081384 + 2 NA Intergenic Intergenic -82028 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 413-248 chr5 145608755 145609012 + 2 NA Intergenic L1PA15|LINE|L1 226459 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 353-13 chr1 60035500 60035688 + 2 NA intron (NM_152377, intron 6 of 11) intron (NM_152377, intron 6 of 11) 38176 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 331-291 chr2 158768608 158768805 + 2 NA Intergenic Intergenic -26611 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 195-189 chr5 28106740 28106925 + 2 NA Intergenic Intergenic 180833 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 357-22 chr1 210989597 210989840 + 2 NA intron (NM_002238, intron 6 of 10) intron (NM_002238, intron 6 of 10) 143656 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 261-7 chr1 56655537 56655716 + 2 NA intron (NM_006252, intron 1 of 8) MSTB1|LTR|ERVL-MaLR -10308 NR_135111 101929935 NR_135111 LOC101929935 - uncharacterized LOC101929935 ncRNA 204-75 chr13 66252496 66252659 + 2 NA Intergenic L2|LINE|L2 34327 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 273-14 chr1 80853319 80853502 + 2 NA Intergenic L2c|LINE|L2 212123 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 241-190 chr2 96290002 96290234 + 2 NA intron (NM_014014, intron 20 of 44) intron (NM_014014, intron 20 of 44) 15428 NM_014014 23020 Hs.246112 NM_014014 ENSG00000144028 SNRNP200 ASCC3L1|BRR2|HELIC2|RP33|U5-200KD small nuclear ribonucleoprotein U5 subunit 200 protein-coding 355-406 chr5 100877258 100877494 + 2 NA intron (NM_005668, intron 3 of 4) intron (NM_005668, intron 3 of 4) 25906 NM_005668 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 304-492 chr7 64880562 64880848 + 2 NA Intergenic Intergenic -22537 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 369-49 chr10 90661673 90661986 + 2 NA Intergenic L1M3f|LINE|L1 -121024 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 294-57 chr11 31844565 31844777 + 2 NA intron (NR_033971, intron 1 of 2) intron (NR_033971, intron 1 of 2) 18104 NR_117094 103157000 NR_117094 ENSG00000281880 PAUPAR - PAX6 upstream antisense RNA ncRNA 304-216 chr18 75078063 75078263 + 2 NA Intergenic HAL1|LINE|L1 127350 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 310-131 chr14 47582638 47582878 + 2 NA intron (NM_001113498, intron 1 of 16) Tigger10|DNA|TcMar-Tigger 92196 NM_001113498 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 218-335 chr8 128465054 128465260 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 99522 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 516-162 chr22 31343463 31343913 + 2 NA intron (NM_032050, intron 1 of 3) intron (NM_032050, intron 1 of 3) 2658 NM_014323 23598 Hs.731398 NM_014323 ENSG00000100105 PATZ1 MAZR|PATZ|RIAZ|ZBTB19|ZNF278|ZSG|dJ400N23 POZ/BTB and AT hook containing zinc finger 1 protein-coding 250-79 chr11 112702117 112702299 + 2 NA Intergenic L1PA16|LINE|L1 -146406 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 220-223 chr3 59168782 59168960 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -118839 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 323-139 chr14 41761650 41761878 + 2 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 154908 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 328-67 chr10 121673805 121674104 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -75496 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 168-32 chr14 66958155 66958281 + 2 NA intron (NM_020806, intron 8 of 22) L1MB5|LINE|L1 -231222 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 284-28 chr10 25741930 25742091 + 2 NA Intergenic L1M4|LINE|L1 90298 NR_108069 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 216-353 chr9 119673759 119673925 + 2 NA Intergenic AluYj4|SINE|Alu -261218 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 387-146 chr17 74075415 74075696 + 2 NA Intergenic MIRb|SINE|MIR -128123 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 358-495 chr8 129503096 129503391 + 2 NA intron (NR_130917, intron 1 of 3) L1MDa|LINE|L1 -19101 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 472-83 chr14 46637788 46638098 + 2 NA Intergenic L1PA13|LINE|L1 13838 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 362-348 chr5 58316138 58316347 + 2 NA Intergenic L1ME4b|LINE|L1 143844 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 237-411 chrX 73161455 73161632 + 2 NA Intergenic L1M1|LINE|L1 -33463 NR_027291 645996 Hs.617486 NR_027291 ENSG00000204118 NAP1L6 - nucleosome assembly protein 1 like 6 pseudo 381-14 chr1 152684819 152685134 + 2 NA Intergenic Intergenic -1147 NM_014357 26239 Hs.234766 NM_014357 ENSG00000159455 LCE2B LEP10|SPRL1B|XP5 late cornified envelope 2B protein-coding 323-562 chr8 129018080 129018279 + 2 NA Intergenic Intergenic -52178 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 351-493 chr8 107389761 107389990 + 2 NA intron (NM_001199859, intron 1 of 8) intron (NM_001199859, intron 1 of 8) -53360 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 526-189 chr4 128920057 128920519 + 2 NA intron (NM_144643, intron 18 of 20) L1PA15|LINE|L1 108444 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 241-227 chr21 28178686 28178868 + 2 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 49890 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 689-69 chr4 59891347 59891923 + 2 NA Intergenic Intergenic 878062 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 409-247 chr5 53177865 53178091 + 2 NA Intergenic MIR3|SINE|MIR 68136 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 249-138 chr16 51233295 51233446 + 2 NA intron (NR_039672, intron 5 of 6) intron (NR_039672, intron 5 of 6) -82098 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 279-67 chr11 41621958 41622213 + 2 NA Intergenic Intergenic -92483 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 393-200 chr20 54997734 54998024 + 2 NA Intergenic Intergenic -425164 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 425-39 chr10 56371877 56372199 + 2 NA Intergenic L1MB7|LINE|L1 -10765 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 376-427 chr9 76965685 76966035 + 2 NA Intergenic Intergenic -53795 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 389-384 chr9 91684960 91685300 + 2 NA Intergenic L1M5|LINE|L1 -48785 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 220-344 chr7 53651152 53651305 + 2 NA Intergenic Intergenic 160703 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 391-13 chr1 109331316 109331546 + 2 NA intron (NM_001205228, intron 11 of 19) L1MA9|LINE|L1 -24420 NM_001265613 343263 Hs.443402 NM_001010985 ENSG00000221986 MYBPHL - myosin binding protein H like protein-coding 189-172 chr6 11475767 11475946 + 2 NA Intergenic Intergenic -61893 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 480-54 chr12 25318246 25318721 + 2 NA Intergenic L2c|LINE|L2 -67554 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 192-190 chr7 29400509 29400655 + 2 NA exon (NM_004067, exon 6 of 13) exon (NM_004067, exon 6 of 13) -79130 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 426-137 chr2 108090131 108090486 + 2 NA Intergenic L1MA1|LINE|L1 -37553 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 376-373 chr7 48189479 48189763 + 2 NA intron (NM_152701, intron 1 of 61) intron (NM_152701, intron 1 of 61) 18163 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 467-79 chr14 51336291 51336611 + 2 NA intron (NR_038358, intron 1 of 4) intron (NR_038358, intron 1 of 4) 3058 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 219-102 chr14 62544073 62544225 + 2 NA Intergenic L1ME2z|LINE|L1 -404176 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 312-16 chr1 105380560 105380783 + 2 NA Intergenic L1PA15-16|LINE|L1 238264 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 209-154 chr2 82457434 82457585 + 2 NA Intergenic Intergenic -399294 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 364-143 chr15 37363719 37364028 + 2 NA Intergenic Intergenic -262562 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 338-292 chr20 11525061 11525372 + 2 NA Intergenic Intergenic -251833 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 391-52 chr10 130326535 130326732 + 2 NA Intergenic Intergenic 190224 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 283-258 chr20 17735982 17736181 + 2 NA TTS (NM_178477) TTS (NM_178477) 36133 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 352-478 chr6 167255540 167255786 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 27363 NR_157263 112590798 NR_157263 HPAT5 - human pluripotency-associated transcript 5 ncRNA 469-59 chr11 116362871 116363210 + 2 NA Intergenic L3|LINE|CR1 -276382 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 277-323 chr5 59612066 59612236 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -24526 NM_001364604 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 246-268 chr3 113588261 113588456 + 2 NA intron (NR_136285, intron 7 of 20) intron (NR_136285, intron 7 of 20) -6518 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 232-156 chr2 6991473 6991658 + 2 NA intron (NM_001349186, intron 2 of 7) intron (NM_001349186, intron 2 of 7) 58481 NR_146069 9781 Hs.22146 NM_014746 ENSG00000151692 RNF144A RNF144|UBCE7IP4|hUIP4 ring finger protein 144A protein-coding 244-220 chr3 26721783 26721963 + 2 NA Intergenic Intergenic 27316 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 225-138 chr19 9532867 9533057 + 2 NA intron (NM_001318055, intron 4 of 6) intron (NM_001318055, intron 4 of 6) 5683 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 374-39 chr10 83101748 83101935 + 2 NA Intergenic Intergenic 575248 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 311-49 chr10 32992682 32992852 + 2 NA Intergenic L1MC1|LINE|L1 -34537 NM_002211 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 358-292 chr3 55573640 55573891 + 2 NA intron (NM_015576, intron 16 of 16) intron (NM_015576, intron 16 of 16) 85704 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 283-16 chr1 107739013 107739271 + 2 NA intron (NM_006113, intron 15 of 26) intron (NM_006113, intron 15 of 26) -50643 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 210-78 chr14 81856835 81857012 + 2 NA Intergenic MER51B|LTR|ERV1 -113785 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 345-38 chr1 213521293 213521487 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -403359 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 354-165 chr16 78627956 78628240 + 2 NA intron (NM_001291997, intron 7 of 7) L3|LINE|CR1 528444 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 500-84 chr14 73881394 73881763 + 2 NA intron (NM_001371328, intron 7 of 8) L2a|LINE|L2 -5281 NM_021188 57862 Hs.270869 NM_021188 ENSG00000119725 ZNF410 APA-1|APA1 zinc finger protein 410 protein-coding 485-83 chr14 82125177 82125584 + 2 NA Intergenic MIRb|SINE|MIR -382242 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 276-295 chr3 68207826 68208020 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 203676 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 291-493 chr9 80500030 80500220 + 2 NA Intergenic L1ME3G|LINE|L1 525102 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 314-341 chr20 42005395 42005606 + 2 NA Intergenic LTR16A1|LTR|ERVL -387123 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 148-66 chr4 120649439 120649530 + 2 NA Intergenic Intergenic 273382 NM_001300824 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 684-104 chr5 117797796 117798285 + 2 NA intron (NR_104997, intron 1 of 2) L1ME4a|LINE|L1 67679 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 380-157 chr17 74148522 74148879 + 2 NA Intergenic Intergenic -54978 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 232-203 chr2 203262483 203262633 + 2 NA intron (NM_177538, intron 4 of 12) L1MEg|LINE|L1 24117 NM_177538 57404 Hs.446065 NM_020674 ENSG00000119004 CYP20A1 CYP-M cytochrome P450 family 20 subfamily A member 1 protein-coding 142-85 chr9 98367197 98367307 + 2 NA intron (NM_005458, intron 12 of 18) intron (NM_005458, intron 12 of 18) -111603 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 205-160 chr2 212146256 212146451 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 280007 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 363-31 chr1 233968694 233968970 + 2 NA intron (NM_173508, intron 2 of 7) L1PA16|LINE|L1 64156 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 324-257 chr2 56696139 56696330 + 2 NA Intergenic L1ME1|LINE|L1 -510464 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 308-465 chr7 63904303 63904504 + 2 NA Intergenic L1ME3G|LINE|L1 -94403 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 178-65 chr2 82595256 82595403 + 2 NA Intergenic L1M4c|LINE|L1 -261474 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 319-243 chr2 71978753 71978995 + 2 NA Intergenic L1MEf|LINE|L1 168988 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 185-169 chr5 101800668 101800851 + 2 NA Intergenic L1MC1|LINE|L1 495525 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 357-175 chr18 68923140 68923436 + 2 NA intron (NM_001093729, intron 8 of 9) intron (NM_001093729, intron 8 of 9) 125208 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 373-102 chr13 72575594 72575804 + 2 NA Intergenic Intergenic 151930 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 323-312 chr22 34764456 34764734 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 233321 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 204-287 chr8 105191203 105191368 + 2 NA Intergenic L1MA3|LINE|L1 -127153 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 309-492 chr6 139896545 139896827 + 2 NA Intergenic Intergenic 41836 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 566-123 chr3 34934710 34935088 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 459124 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 388-50 chr10 86390551 86390823 + 2 NA Intergenic Intergenic -23892 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 309-442 chr5 74078775 74078980 + 2 NA Intergenic L2b|LINE|L2 229448 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 176-28 chr14 67239151 67239287 + 2 NA Intergenic Intergenic -2216 NM_001256550 64398 Hs.652312 NM_022474 ENSG00000072415 MPP5 PALS1 membrane palmitoylated protein 5 protein-coding 344-474 chr8 513452 513738 + 2 NA intron (NM_001256113, intron 1 of 3) L1M4b|LINE|L1 2157 NM_001369716 157695 Hs.289293 NM_175075 ENSG00000180190 TDRP C8orf42|Inm01|TDRP1|TDRP2 testis development related protein protein-coding 279-207 chr2 201578748 201578971 + 2 NA intron (NM_001168221, intron 5 of 15) intron (NM_001168221, intron 5 of 15) 40319 NM_001168217 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 387-394 chr9 82329073 82329443 + 2 NA Intergenic Intergenic 340486 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 272-111 chr14 43818688 43818879 + 2 NA Intergenic L2c|LINE|L2 688500 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 430-340 chr9 131845538 131845914 + 2 NA Intergenic Intergenic -105782 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 348-276 chr21 34155512 34155758 + 2 NA Intergenic Intergenic -25042 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 457-11 chr1 106813044 106813429 + 2 NA Intergenic L1MA8|LINE|L1 -5003 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 584-150 chr6 70924350 70924852 + 2 NA intron (NM_080742, intron 1 of 3) intron (NM_080742, intron 1 of 3) 32459 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 393-119 chr16 65528503 65528887 + 2 NA intron (NR_027755, intron 2 of 8) intron (NR_027755, intron 2 of 8) 47605 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 363-80 chr11 70921350 70921536 + 2 NA intron (NM_012309, intron 9 of 24) L1MEg|LINE|L1 -49075 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 236-49 chr10 79946914 79947067 + 2 NA intron (NM_003019, intron 1 of 7) intron (NM_003019, intron 1 of 7) 2115 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 183-30 chr12 10763350 10763504 + 2 NA intron (NR_120463, intron 1 of 6) L1M4c|LINE|L1 13193 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 466-266 chr8 78409217 78409678 + 2 NA Intergenic Intergenic -106893 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 665-96 chr7 83389085 83389610 + 2 NA intron (NM_001178129, intron 14 of 16) intron (NM_001178129, intron 14 of 16) -226463 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 318-550 chr8 118422912 118423153 + 2 NA intron (NM_001349811, intron 3 of 4) AluJb|SINE|Alu -197969 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 407-10 chr1 116036191 116036514 + 2 NA intron (NM_018420, intron 7 of 11) intron (NM_018420, intron 7 of 11) -59076 NR_125970 101928977 Hs.627914 NR_125970 LOC101928977 - uncharacterized LOC101928977 ncRNA 214-240 chr4 81566736 81566937 + 2 NA Intergenic Intergenic -94929 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 459-268 chr6 168777962 168778337 + 2 NA Intergenic L2a|LINE|L2 186233 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 339-548 chr7 141447492 141447731 + 2 NA intron (NM_001195278, intron 3 of 3) intron (NM_001195278, intron 3 of 3) -103799 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 332-148 chr14 20869655 20869886 + 2 NA Intergenic Intergenic -21633 NM_002935 6037 Hs.73839 NM_002935 ENSG00000169397 RNASE3 ECP|RAF1|RNS3 ribonuclease A family member 3 protein-coding 347-227 chr2 79667672 79667891 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -18422 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 357-468 chr8 139273835 139274087 + 2 NA Intergenic Intergenic -359920 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 931-18 chr3 14294945 14295546 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 57323 NR_110135 101927565 Hs.306905 NR_110135 ENSG00000251576 LINC01267 - long intergenic non-protein coding RNA 1267 ncRNA 430-155 chr2 142085544 142085824 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 46017 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 431-175 chr3 39162978 39163244 + 2 NA Intergenic L1MC4|LINE|L1 -8470 NM_001320560 64651 Hs.370950 NM_033027 ENSG00000144655 CSRNP1 AXUD1|CSRNP-1|FAM130B|TAIP-3|URAX1 cysteine and serine rich nuclear protein 1 protein-coding 454-37 chr10 106312183 106312504 + 2 NA Intergenic L2c|LINE|L2 172178 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 277-59 chr10 78616858 78617081 + 2 NA Intergenic Intergenic 349627 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 240-436 chr9 15414056 15414199 + 2 NA Intergenic L1PB1|LINE|L1 -8657 NM_001039697 6619 Hs.546299 NM_003084 ENSG00000164975 SNAPC3 PTFbeta|SNAP50 small nuclear RNA activating complex polypeptide 3 protein-coding 497-259 chr7 33010401 33010702 + 2 NA Intergenic L2a|LINE|L2 30355 NM_016489 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 367-339 chr5 3299967 3300258 + 2 NA Intergenic Intergenic 122277 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 316-431 chr5 26410634 26410794 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 627872 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 623-51 chr19 52381263 52381777 + 2 NA intron (NM_001145434, intron 3 of 3) L1MB5|LINE|L1 11597 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 622-55 chr2 47967660 47968117 + 2 NA Intergenic Intergenic -62095 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 319-99 chr11 103583133 103583436 + 2 NA Intergenic Intergenic -266622 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 347-10 chr1 58863706 58863887 + 2 NA intron (NR_108106, intron 1 of 1) intron (NR_108106, intron 1 of 1) 78645 NR_034014 100131060 Hs.680604 NR_034014 ENSG00000234807 LINC01135 - long intergenic non-protein coding RNA 1135 ncRNA 590-31 chr12 41367578 41368040 + 2 NA intron (NM_001164595, intron 3 of 9) intron (NM_001164595, intron 3 of 9) -69930 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 228-271 chr5 97277510 97277664 + 2 NA Intergenic L1P3|LINE|L1 -94340 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 450-218 chr4 33241688 33241987 + 2 NA Intergenic L1P2|LINE|L1 798056 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 322-541 chr8 110243459 110243655 + 2 NA Intergenic L1PA16|LINE|L1 -267786 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 397-367 chrX 69705984 69706278 + 2 NA intron (NM_001005613, intron 2 of 2) intron (NM_001005613, intron 2 of 2) 90018 NM_001005612 1896 Hs.105407 NM_001399 ENSG00000158813 EDA ECTD1|ED1|ED1-A1|ED1-A2|EDA-A1|EDA-A2|EDA1|EDA2|HED|HED1|ODT1|STHAGX1|TNLG7C|XHED|XLHED ectodysplasin A protein-coding 725-5 chr1 189809015 189809620 + 2 NA Intergenic L1MB4|LINE|L1 666693 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 230-53 chr10 125717999 125718143 + 2 NA intron (NR_033847, intron 1 of 4) L1ME4a|LINE|L1 1422 NR_033847 399821 Hs.535286 NR_033847 ENSG00000224023 EDRF1-DT - EDRF1 divergent transcript ncRNA 301-444 chr8 59455183 59455482 + 2 NA Intergenic L1ME1|LINE|L1 336122 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 281-209 chr2 63189776 63190033 + 2 NA intron (NR_148705, intron 13 of 16) intron (NR_148705, intron 13 of 16) -70362 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 273-203 chr2 22677330 22677526 + 2 NA Intergenic L1MEg|LINE|L1 140949 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 311-390 chr4 132818998 132819223 + 2 NA Intergenic (TGT)n|Simple_repeat|Simple_repeat 228021 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 539-61 chr13 67025371 67025889 + 2 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 34744 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 256-138 chr15 66936121 66936350 + 2 NA intron (NR_135687, intron 2 of 2) MIRb|SINE|MIR 20280 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 245-115 chr13 85531147 85531364 + 2 NA intron (NR_046989, intron 1 of 3) MLT1E1|LTR|ERVL-MaLR 167652 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 373-58 chr10 71121560 71121862 + 2 NA Intergenic L1PA13|LINE|L1 -90859 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 280-335 chr5 131927074 131927228 + 2 NA intron (NM_001303622, intron 5 of 12) L1MB1|LINE|L1 18512 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 325-510 chr7 81592679 81592961 + 2 NA intron (NR_126025, intron 6 of 10) L2b|LINE|L2 -31001 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 393-36 chr10 30983651 30984033 + 2 NA intron (NR_026560, intron 1 of 6) L1MD3|LINE|L1 15675 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 256-99 chr13 27524488 27524694 + 2 NA Intergenic Intergenic -73989 NM_001166263 219402 Hs.534582 NM_152912 ENSG00000122033 MTIF3 IF3mt mitochondrial translational initiation factor 3 protein-coding 403-83 chr13 29088843 29089056 + 2 NA intron (NM_001366651, intron 4 of 14) L1PA15|LINE|L1 64492 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 304-232 chr19 58144249 58144503 + 2 NA intron (NM_024620, intron 1 of 3) (TATC)n|Simple_repeat|Simple_repeat 6413 NM_024620 79673 Hs.458377 NM_024620 ENSG00000181894 ZNF329 - zinc finger protein 329 protein-coding 556-145 chr3 89277131 89277474 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 169681 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 215-351 chrX 98870067 98870194 + 2 NA Intergenic L1PA15|LINE|L1 -1305595 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 265-99 chr13 107001822 107002006 + 2 NA Intergenic Intergenic 319049 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 597-121 chr6 117939243 117939766 + 2 NA intron (NM_001029858, intron 1 of 7) intron (NM_001029858, intron 1 of 7) 32240 NM_001029858 222553 Hs.654841 NM_001029858 ENSG00000196376 SLC35F1 C6orf169|dJ230I3.1 solute carrier family 35 member F1 protein-coding 566-53 chr14 83535148 83535655 + 2 NA Intergenic Intergenic 892769 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 467-17 chr1 223509508 223509816 + 2 NA Intergenic Intergenic 116247 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 447-286 chr9 19427358 19427606 + 2 NA intron (NM_001010887, intron 3 of 5) intron (NM_001010887, intron 3 of 5) 18473 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 572-162 chr7 70442208 70442558 + 2 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -689761 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 272-334 chr5 26540029 26540295 + 2 NA Intergenic Intergenic 498424 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 183-98 chr4 13120855 13120995 + 2 NA Intergenic Intergenic 363415 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 363-217 chr2 98291716 98291971 + 2 NA intron (NM_001345864, intron 17 of 21) L2c|LINE|L2 -54312 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 295-268 chr21 26900232 26900462 + 2 NA Intergenic Intergenic -53614 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 227-78 chr12 32971231 32971391 + 2 NA Intergenic L3|LINE|CR1 -74465 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 334-539 chr8 92113313 92113630 + 2 NA Intergenic Intergenic -10086 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 368-350 chr5 11665504 11665694 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -76533 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 590-90 chr20 39345194 39345609 + 2 NA Intergenic L1ME3|LINE|L1 -120653 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 569-67 chr17 34718705 34719073 + 2 NA Intergenic L1MA7|LINE|L1 138140 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 270-295 chr5 37925411 37925672 + 2 NA Intergenic Intergenic -22950 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 189-75 chr18 11316299 11316476 + 2 NA Intergenic L1M4|LINE|L1 -138091 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 250-465 chr9 135209517 135209688 + 2 NA Intergenic Intergenic 27993 NR_046107 401557 Hs.640138 NR_046107 LOC401557 - uncharacterized LOC401557 ncRNA 303-177 chr18 63175644 63175880 + 2 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 143618 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 163-27 chr11 116001868 116002027 + 2 NA Intergenic L2|LINE|L2 -241747 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 352-67 chr10 129423842 129424150 + 2 NA Intergenic Intergenic -43245 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 222-78 chr12 10686482 10686663 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -12520 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 418-23 chr10 19539553 19539812 + 2 NA intron (NM_001142308, intron 32 of 39) AluJb|SINE|Alu 188868 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 504-184 chr4 42727333 42727736 + 2 NA Intergenic Intergenic -70429 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 331-18 chr1 111045818 111046022 + 2 NA Intergenic L1ME3B|LINE|L1 -81976 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 211-153 chr2 158326608 158326762 + 2 NA intron (NM_138803, intron 7 of 13) intron (NM_138803, intron 7 of 13) 130068 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 369-51 chr10 131141771 131142040 + 2 NA intron (NM_174937, intron 7 of 11) intron (NM_174937, intron 7 of 11) 46687 NR_120623 101927489 Hs.659317 NR_120623 ENSG00000230098 TCERG1L-AS1 - TCERG1L antisense RNA 1 ncRNA 645-136 chr9 78214559 78215015 + 2 NA Intergenic Intergenic -21288 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 518-315 chr9 85310650 85310994 + 2 NA Intergenic Intergenic 431207 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 625-58 chr2 226290524 226290885 + 2 NA Intergenic L2a|LINE|L2 147910 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 454-245 chr4 156216716 156217114 + 2 NA Intergenic Intergenic -263049 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 316-89 chr11 4464201 4464511 + 2 NA Intergenic LTR10B2|LTR|ERV1 15061 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 428-308 chr8 129985631 129986055 + 2 NA intron (NM_001353245, intron 1 of 13) intron (NM_001353245, intron 1 of 13) 22610 NR_049826 100847051 NR_049826 ENSG00000264653 MIR5194 mir-5194 microRNA 5194 ncRNA 503-78 chr12 109136179 109136515 + 2 NA intron (NM_001093, intron 1 of 52) L1M4|LINE|L1 19760 NM_001093 32 Hs.234898 NM_001093 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 177-167 chr9 27680722 27680880 + 2 NA Intergenic L3|LINE|CR1 -106935 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 276-304 chr3 108747989 108748217 + 2 NA Intergenic L2a|LINE|L2 9180 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 259-66 chr11 5903962 5904194 + 2 NA Intergenic Intergenic 3313 NM_001005166 390082 NM_001005166 ENSG00000277932 OR52E5 OR11-56 olfactory receptor family 52 subfamily E member 5 protein-coding 458-132 chr2 76897784 76898195 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) -87976 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 219-88 chr13 65903077 65903243 + 2 NA Intergenic Intergenic 37113 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 520-61 chr11 121946127 121946458 + 2 NA Intergenic Intergenic 153552 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 341-585 chrX 127930997 127931268 + 2 NA Intergenic MER57A-int|LTR|ERV1 121271 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 209-205 chr3 125462006 125462131 + 2 NA intron (NM_003794, intron 9 of 13) intron (NM_003794, intron 9 of 13) 58134 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 150-16 chr10 92840416 92840512 + 2 NA intron (NM_001319194, intron 2 of 22) MIR|SINE|MIR -7991 NM_001319200 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 262-363 chr6 42434173 42434416 + 2 NA intron (NM_001297573, intron 2 of 17) L1MEg|LINE|L1 17757 NM_001297573 55809 Hs.485392 NM_018415 ENSG00000124496 TRERF1 BCAR2|HSA277276|RAPA|TREP132|TReP-132|dJ139D8.5 transcriptional regulating factor 1 protein-coding 369-300 chr4 105931321 105931631 + 2 NA intron (NM_001184692, intron 3 of 10) intron (NM_001184692, intron 3 of 10) 36005 NM_001184692 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 316-72 chr10 66255706 66255907 + 2 NA intron (NM_001127384, intron 13 of 17) MER84-int|LTR|ERV1 -670230 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 397-135 chr19 36887379 36887759 + 2 NA TTS (NM_001171979) TTS (NM_001171979) 28470 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 235-99 chr14 50034018 50034195 + 2 NA intron (NR_131171, intron 6 of 8) (GATA)n|Simple_repeat|Simple_repeat -26586 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 172-116 chr6 139614159 139614316 + 2 NA Intergenic Intergenic -139641 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 345-131 chr13 46837564 46837865 + 2 NA intron (NM_001165947, intron 2 of 2) intron (NM_001165947, intron 2 of 2) -14426 NR_046612 100874082 Hs.569281 NR_046612 ENSG00000224517 HTR2A-AS1 - HTR2A antisense RNA 1 ncRNA 485-176 chr3 28154329 28154717 + 2 NA Intergenic L1MC5a|LINE|L1 -87096 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 197-86 chr2 7430120 7430286 + 2 NA non-coding (NR_038432, exon 4 of 6) non-coding (NR_038432, exon 4 of 6) 8942 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 280-411 chr8 86132025 86132191 + 2 NA intron (NM_152565, intron 2 of 7) Charlie2a|DNA|hAT-Charlie 33198 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 295-420 chr6 142800879 142801051 + 2 NA intron (NM_006734, intron 2 of 9) intron (NM_006734, intron 2 of 9) 144211 NM_006734 3097 Hs.510172 NM_006734 ENSG00000010818 HIVEP2 HIV-EP2|MBP-2|MIBP1|MRD43|SHN2|ZAS2|ZNF40B human immunodeficiency virus type I enhancer binding protein 2 protein-coding 609-81 chr3 162866055 162866543 + 2 NA Intergenic Intergenic 437002 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 1142-5 chr5 35626335 35627131 + 2 NA intron (NM_144722, intron 1 of 9) Tigger10|DNA|TcMar-Tigger 8870 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 386-332 chr7 109159796 109160110 + 2 NA Intergenic L1ME1|LINE|L1 -275366 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 221-101 chr16 25362156 25362338 + 2 NA Intergenic Intergenic -104402 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 468-181 chr21 26642092 26642440 + 2 NA Intergenic L1PREC2|LINE|L1 -68980 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 344-49 chr10 44246051 44246359 + 2 NA Intergenic L1PA7|LINE|L1 -46545 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 190-144 chr5 42457325 42457490 + 2 NA intron (NM_001242401, intron 1 of 10) MIR|SINE|MIR 32426 NM_001242401 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 441-83 chr14 99372436 99372796 + 2 NA Intergenic Intergenic -100419 NM_138576 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 320-99 chr11 108882686 108882983 + 2 NA intron (NM_004398, intron 16 of 17) intron (NM_004398, intron 16 of 17) 217765 NM_004398 1662 Hs.591931 NM_004398 ENSG00000178105 DDX10 Dbp4|HRH-J8 DEAD-box helicase 10 protein-coding 584-151 chr6 73385169 73385693 + 2 NA Intergenic L1M4|LINE|L1 -9397 NM_018665 55510 Hs.125507 NM_018665 ENSG00000080007 DDX43 CT13|HAGE DEAD-box helicase 43 protein-coding 353-266 chr2 187486914 187487114 + 2 NA intron (NM_001318941, intron 5 of 7) intron (NM_001318941, intron 5 of 7) -38762 NM_001271751 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 433-23 chr10 54056973 54057392 + 2 NA intron (NM_001354411, intron 19 of 34) THE1B-int|LTR|ERVL-MaLR -429048 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 305-321 chr21 29192679 29192934 + 2 NA promoter-TSS (NR_027072) promoter-TSS (NR_027072) -688 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 322-427 chr5 53157113 53157388 + 2 NA Intergenic LTR16A|LTR|ERVL 47408 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 362-254 chr22 21899603 21899909 + 2 NA Intergenic AluSp|SINE|Alu -32076 NM_002745 5594 Hs.431850 NM_002745 ENSG00000100030 MAPK1 ERK|ERK-2|ERK2|ERT1|MAPK2|P42MAPK|PRKM1|PRKM2|p38|p40|p41|p41mapk|p42-MAPK mitogen-activated protein kinase 1 protein-coding 618-3 chr1 44841447 44842020 + 2 NA intron (NM_003738, intron 2 of 21) intron (NM_003738, intron 2 of 21) 1211 NM_001166292 8643 Hs.591497 NM_003738 ENSG00000117425 PTCH2 PTC2 patched 2 protein-coding 587-85 chr20 40171941 40172418 + 2 NA Intergenic Intergenic 167718 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 441-11 chr1 114178420 114178728 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -24705 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 357-93 chr13 31819452 31819731 + 2 NA Intergenic L1ME2z|LINE|L1 -27192 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 308-137 chr14 41983949 41984239 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 377238 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 605-42 chr18 65357366 65357733 + 2 NA Intergenic Intergenic -392703 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 215-163 chr2 201368107 201368317 + 2 NA Intergenic L1PA16|LINE|L1 -10814 NM_139163 130540 Hs.107944 NM_139163 ENSG00000155749 FLACC1 ALS2CR12 flagellum associated containing coiled-coil domains 1 protein-coding 241-366 chr7 41868599 41868794 + 2 NA Intergenic MER20|DNA|hAT-Charlie -165606 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 522-139 chr2 106674979 106675263 + 2 NA Intergenic L1PA10|LINE|L1 187757 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 464-255 chr8 83938694 83938942 + 2 NA Intergenic L1MB8|LINE|L1 -243969 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 348-110 chr12 34585338 34585657 + 2 NA Intergenic ALR/Alpha|Satellite|centr 563001 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 287-72 chr10 106048853 106049068 + 2 NA Intergenic Intergenic -91205 NR_134330 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 322-565 chr9 78025211 78025452 + 2 NA intron (NM_002072, intron 1 of 6) intron (NM_002072, intron 1 of 6) 6480 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 254-157 chr17 67450649 67450842 + 2 NA intron (NM_181671, intron 1 of 9) L1MB4|LINE|L1 -20744 NR_037517 100500895 NR_037517 ENSG00000207688 MIR548AA2 - microRNA 548aa-2 ncRNA 281-379 chr5 164187230 164187431 + 2 NA Intergenic Intergenic 280072 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 419-258 chr6 135645440 135645659 + 2 NA intron (NR_152842, intron 3 of 5) L1MEf|LINE|L1 147748 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 351-510 chr9 25054309 25054509 + 2 NA Intergenic Intergenic -508512 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 224-144 chr2 69767970 69768146 + 2 NA intron (NM_001365496, intron 2 of 13) MIRb|SINE|MIR 25924 NM_001153 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 367-333 chr4 120415931 120416293 + 2 NA Intergenic Intergenic -349264 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 746-49 chr3 25975847 25976273 + 2 NA Intergenic Intergenic -102365 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 592-99 chr20 59661591 59662047 + 2 NA intron (NM_001281507, intron 1 of 12) intron (NM_001281507, intron 1 of 12) -14842 NM_001199506 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 338-529 chr8 36645045 36645297 + 2 NA Intergenic Intergenic -139203 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 381-15 chr1 158508183 158508436 + 2 NA Intergenic L1M4c|LINE|L1 28431 NM_001004472 343406 Hs.451913 NM_001004472 ENSG00000198965 OR10R2 OR1-8|OR10R2Q olfactory receptor family 10 subfamily R member 2 protein-coding 556-63 chr14 61746630 61747019 + 2 NA TTS (NR_045406) TTS (NR_045406) 2265 NR_045406 100750247 Hs.597216 NR_045406 HIF1A-AS2 3'aHIF-1A|aHIF HIF1A antisense RNA 2 ncRNA 334-385 chr4 97917373 97917673 + 2 NA intron (NM_174952, intron 8 of 10) intron (NM_174952, intron 8 of 10) 225953 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 248-314 chr5 63396112 63396284 + 2 NA Intergenic Intergenic 566094 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 113-2 chr1 71007101 71007177 + 2 NA 3' UTR (NM_198715, exon 2 of 2) 3' UTR (NM_198715, exon 2 of 2) -39367 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 557-97 chr2 59913221 59913516 + 2 NA Intergenic Intergenic 469668 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 294-427 chr7 10912082 10912247 + 2 NA Intergenic L2c|LINE|L2 27989 NM_002489 4697 Hs.50098 NM_002489 ENSG00000189043 NDUFA4 CI-9k|CI-MLRQ|COXFA4|MLRQ NDUFA4 mitochondrial complex associated protein-coding 689-5 chr1 168389707 168390175 + 2 NA Intergenic L1MEg|LINE|L1 14417 NR_030284 693142 NR_030284 ENSG00000207974 MIR557 MIRN557|hsa-mir-557 microRNA 557 ncRNA 584-45 chr14 70515790 70516229 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 18995 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 418-306 chr9 81216427 81216819 + 2 NA Intergenic L1MC5|LINE|L1 472912 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 793-18 chr14 57776707 57777329 + 2 NA intron (NR_159373, intron 1 of 10) L1PREC2|LINE|L1 87981 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 149-26 chr13 56645493 56645606 + 2 NA Intergenic Intergenic -495369 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 511-285 chrX 33777389 33777732 + 2 NA Intergenic L1MCa|LINE|L1 354770 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 287-189 chr2 31664470 31664634 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -83614 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 314-519 chr7 10467290 10467558 + 2 NA intron (NR_147499, intron 2 of 2) L1ME4a|LINE|L1 -235252 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 697-69 chr7 77973109 77973535 + 2 NA Intergenic L1ME1|LINE|L1 133192 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 212-22 chr1 221799958 221800120 + 2 NA Intergenic HAL1|LINE|L1 40627 NR_125989 101929771 Hs.557001 NR_125989 ENSG00000227925 LINC01655 - long intergenic non-protein coding RNA 1655 ncRNA 462-67 chr12 115816257 115816590 + 2 NA Intergenic Intergenic 332231 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 331-130 chr12 129625930 129626233 + 2 NA intron (NM_133448, intron 2 of 8) MER103C|DNA|hAT-Charlie 277944 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 325-484 chr6 163633877 163634054 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 37519 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 313-486 chr7 9377901 9378127 + 2 NA Intergenic L1ME1|LINE|L1 -256256 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 214-274 chr6 19030423 19030604 + 2 NA Intergenic Intergenic 149967 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 331-540 chr8 118985813 118986019 + 2 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 33653 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 418-161 chr3 88862886 88863140 + 2 NA Intergenic Intergenic -244608 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 383-101 chr13 110858192 110858469 + 2 NA Intergenic L1ME3B|LINE|L1 11978 NR_027701 283487 Hs.245390 NM_178514 ENSG00000255874 LINC00346 C13orf29|NCRNA00346 long intergenic non-protein coding RNA 346 ncRNA 469-181 chr3 96347917 96348281 + 2 NA Intergenic Intergenic -11865 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 318-509 chr7 50012719 50012991 + 2 NA intron (NM_001159878, intron 6 of 7) L1M4|LINE|L1 80391 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 354-313 chr3 189188611 189188820 + 2 NA intron (NM_198485, intron 1 of 5) intron (NM_198485, intron 1 of 5) 16744 NM_198485 285386 Hs.729544 NM_198485 ENSG00000188001 TPRG1 FAM79B tumor protein p63 regulated 1 protein-coding 329-329 chr20 37448227 37448491 + 2 NA Intergenic Intergenic 71944 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 357-258 chr3 3043911 3044102 + 2 NA intron (NM_175607, intron 23 of 24) intron (NM_175607, intron 23 of 24) 17139 NR_046554 100873975 Hs.581502 NR_046554 CNTN4-AS1 - CNTN4 antisense RNA 1 ncRNA 368-461 chr8 111194809 111195131 + 2 NA intron (NR_125418, intron 1 of 3) L1PA16|LINE|L1 41233 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 444-278 chr9 14037506 14037731 + 2 NA Intergenic Intergenic 109647 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 304-354 chr3 136216181 136216354 + 2 NA Intergenic AluSz|SINE|Alu -19932 NM_018133 55167 Hs.18631 NM_018133 ENSG00000174579 MSL2 MSL-2|MSL2L1|RNF184 MSL complex subunit 2 protein-coding 295-61 chr10 126741475 126741675 + 2 NA Intergenic Intergenic -71065 NR_146939 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 287-176 chr18 64935352 64935565 + 2 NA Intergenic Intergenic -675403 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 342-430 chr5 147065714 147065929 + 2 NA intron (NM_181677, intron 2 of 10) intron (NM_181677, intron 2 of 10) -9684 NM_181676 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 339-192 chr16 47798709 47798999 + 2 NA Intergenic L1ME3G|LINE|L1 -59727 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 371-12 chr1 91450291 91450558 + 2 NA Intergenic Intergenic -45587 NM_001017975 164045 Hs.454818 NM_001017975 ENSG00000162669 HFM1 MER3|POF9|SEC63D1|Si-11|Si-11-6|helicase helicase for meiosis 1 protein-coding 337-226 chr18 73029012 73029312 + 2 NA Intergenic L1MCa|LINE|L1 160122 NR_134647 100505797 Hs.145111 NR_134647 ENSG00000263958 LOC100505797 - myosin heavy chain IB-like ncRNA 318-448 chr5 83514639 83514949 + 2 NA intron (NM_001126336, intron 6 of 12) intron (NM_001126336, intron 6 of 12) 43050 NM_004385 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 402-216 chr3 107199931 107200319 + 2 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 40513 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 215-154 chr2 123655834 123656019 + 2 NA Intergenic Intergenic 369248 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 332-507 chr7 157069974 157070295 + 2 NA Intergenic L1M2|LINE|L1 59277 NR_038835 645249 Hs.224879 NR_038835 ENSG00000243479 MNX1-AS1 CCAT5 MNX1 antisense RNA 1 (head to head) ncRNA 501-214 chr5 110061061 110061401 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 178049 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 476-215 chr5 40313736 40314048 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 261601 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 182-86 chr2 75065766 75065931 + 2 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) -24964 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 513-72 chr14 55145270 55145637 + 2 NA TTS (NM_002306) TTS (NM_002306) 8470 NR_003225 3958 Hs.531081 NM_002306 ENSG00000131981 LGALS3 CBP35|GAL3|GALBP|GALIG|L31|LGALS2|MAC2 galectin 3 protein-coding 268-6 chr1 60657093 60657257 + 2 NA Intergenic Intergenic -34490 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 310-417 chr5 104844176 104844401 + 2 NA Intergenic LTR39|LTR|ERV1 -255186 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 273-30 chr1 214192200 214192374 + 2 NA Intergenic L1MB2|LINE|L1 -88872 NM_020197 56950 Hs.66170 NM_020197 ENSG00000143499 SMYD2 HSKM-B|KMT3C|ZMYND14 SET and MYND domain containing 2 protein-coding 309-124 chr13 31435044 31435293 + 2 NA Intergenic Intergenic 235193 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 534-169 chr3 157947447 157947781 + 2 NA Intergenic Intergenic 158549 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 322-336 chr3 99160450 99160627 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -258843 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 126-16 chr12 33470992 33471072 + 2 NA Intergenic MLT2C1|LTR|ERVL -31213 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 337-396 chr4 58709598 58709796 + 2 NA Intergenic Intergenic -173369 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 343-351 chr3 112854059 112854342 + 2 NA Intergenic L1PREC2|LINE|L1 -8250 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 421-257 chr6 49501060 49501332 + 2 NA intron (NM_001010904, intron 1 of 5) AluSx|SINE|Alu 1273 NM_001010904 389396 Hs.585172 NM_001010904 ENSG00000203972 GLYATL3 C6orf140|bA28H17.2 glycine-N-acyltransferase like 3 protein-coding 205-109 chr16 13226202 13226364 + 2 NA intron (NM_001145204, intron 4 of 4) intron (NM_001145204, intron 4 of 4) 324685 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 189-85 chr2 7664671 7664851 + 2 NA Intergenic Intergenic 234894 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 427-98 chr18 10226291 10226613 + 2 NA Intergenic L1ME1|LINE|L1 187918 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 491-240 chr7 18013184 18013616 + 2 NA Intergenic Intergenic 14446 NM_175886 221823 Hs.169284 NM_175886 ENSG00000229937 PRPS1L1 PRPS1|PRPS3|PRPSL|PRS-III phosphoribosyl pyrophosphate synthetase 1 like 1 protein-coding 217-258 chr4 61488103 61488287 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 286023 NM_001371342 180-2 chr1 47930499 47930651 + 2 NA intron (NM_001194986, intron 2 of 6) intron (NM_001194986, intron 2 of 6) 66810 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 234-119 chr16 47858873 47859052 + 2 NA non-coding (NR_110650, exon 1 of 6) non-coding (NR_110650, exon 1 of 6) 381 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 251-34 chr10 65972344 65972531 + 2 NA intron (NM_001127384, intron 16 of 17) L1PA16|LINE|L1 401012 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 164-56 chr2 99131114 99131198 + 2 NA intron (NM_001349013, intron 1 of 16) L1PA7|LINE|L1 10024 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 720-21 chr11 127783066 127783578 + 2 NA Intergenic Intergenic -425444 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 451-7 chr1 90226178 90226565 + 2 NA Intergenic AluYh3|SINE|Alu 231261 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 346-455 chr7 15112333 15112509 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -137563 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 820-49 chr5 130741032 130741676 + 2 NA Intergenic L1M4b|LINE|L1 423902 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 244-279 chr4 154969963 154970151 + 2 NA Intergenic MIR3|SINE|MIR 188552 NM_001277173 166863 Hs.133095 NM_144979 ENSG00000151962 RBM46 CT68 RNA binding motif protein 46 protein-coding 208-282 chr9 32774369 32774563 + 2 NA Intergenic L1M4c|LINE|L1 -9074 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 249-215 chr2 137458943 137459108 + 2 NA intron (NM_001316349, intron 15 of 27) HSMAR2|DNA|TcMar-Mariner 468907 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 420-257 chr6 131599088 131599389 + 2 NA intron (NM_015979, intron 19 of 30) MER5A|DNA|hAT-Charlie 26012 NM_001244438 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 437-215 chr5 27960132 27960456 + 2 NA Intergenic L1PREC2|LINE|L1 327371 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 960-16 chr18 69720461 69721194 + 2 NA intron (NM_152721, intron 5 of 7) intron (NM_152721, intron 5 of 7) 227046 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 476-171 chr22 34984324 34984575 + 2 NA intron (NR_138042, intron 1 of 4) LTR33|LTR|ERVL 13467 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 361-6 chr1 60791716 60792055 + 2 NA intron (NR_110628, intron 1 of 5) L2c|LINE|L2 33699 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 586-76 chr2 99092608 99093016 + 2 NA intron (NR_146001, intron 9 of 18) L1PB1|LINE|L1 48368 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 275-346 chr7 106604760 106605017 + 2 NA Intergenic Intergenic 56270 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 383-95 chr13 50535773 50536122 + 2 NA Intergenic L1M2c|LINE|L1 -8498 NR_125753 103689915 Hs.722230 NR_125753 ENSG00000186047 DLEU1-AS1 LINC01308 DLEU1 antisense RNA 1 ncRNA 529-201 chr7 15228213 15228737 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -253617 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 589-65 chr2 52110488 52110923 + 2 NA intron (NR_135237, intron 7 of 10) L1MEc|LINE|L1 -259943 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 215-85 chr14 59048581 59048779 + 2 NA Intergenic Intergenic -139987 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 177-28 chr11 24792602 24792715 + 2 NA intron (NM_001252010, intron 5 of 9) MIRb|SINE|MIR 295605 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 307-377 chr5 23094222 23094384 + 2 NA Intergenic Intergenic -240959 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 335-316 chr21 31028381 31028557 + 2 NA Intergenic L1ME3C|LINE|L1 10007 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 382-134 chr16 78586645 78586939 + 2 NA intron (NM_001291997, intron 7 of 7) MIRb|SINE|MIR 487138 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 250-2 chr1 30562818 30563039 + 2 NA Intergenic MER51E|LTR|ERV1 -155844 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 226-231 chr3 110054788 110054908 + 2 NA Intergenic Intergenic 452020 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 242-53 chr11 29858336 29858484 + 2 NA Intergenic Intergenic 123983 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 184-132 chr5 15821154 15821327 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -113942 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 243-438 chr8 35216896 35217053 + 2 NA Intergenic L1M4a1|LINE|L1 -18501 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 548-133 chr20 30161216 30161599 + 2 NA Intergenic ALR/Alpha|Satellite|centr 125130 NR_145432 400841 Hs.516959 NM_207470 LINC01597 - long intergenic non-protein coding RNA 1597 ncRNA 194-25 chr10 99739832 99739975 + 2 NA intron (NM_015960, intron 3 of 8) intron (NM_015960, intron 3 of 8) -7237 NM_001320974 1355 Hs.28326 NM_004376 ENSG00000014919 COX15 CEMCOX2 cytochrome c oxidase assembly homolog COX15 protein-coding 310-355 chr4 10578877 10579049 + 2 NA intron (NM_052964, intron 4 of 18) intron (NM_052964, intron 4 of 18) 105805 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 549-216 chr8 131851361 131851878 + 2 NA Intergenic L2a|LINE|L2 -52474 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 236-314 chr7 3307580 3307778 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 6427 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 282-416 chr6 156615445 156615675 + 2 NA Intergenic L1MEd|LINE|L1 -162295 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 375-167 chr17 60045278 60045618 + 2 NA intron (NM_022070, intron 19 of 19) intron (NM_022070, intron 19 of 19) -2343 NR_039890 100616210 NR_039890 ENSG00000264049 MIR4737 - microRNA 4737 ncRNA 329-355 chr3 30572117 30572350 + 2 NA Intergenic L1MA1|LINE|L1 -34269 NM_001024847 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 324-369 chr3 164759555 164759729 + 2 NA intron (NR_126405, intron 1 of 3) intron (NR_126405, intron 1 of 3) 71838 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 557-102 chr2 107547705 107548093 + 2 NA intron (NR_146968, intron 2 of 2) L1ME3D|LINE|L1 18480 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 415-252 chr7 32097735 32098061 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -26462 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 270-218 chr21 27302855 27303053 + 2 NA Intergenic Intergenic -335866 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 410-128 chr2 22668494 22668757 + 2 NA Intergenic Intergenic 132146 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 854-33 chr4 62477801 62478309 + 2 NA Intergenic Intergenic -316290 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 318-97 chr11 30667521 30667720 + 2 NA Intergenic MIR|SINE|MIR -81267 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 248-38 chr10 54173168 54173365 + 2 NA intron (NM_001354411, intron 14 of 34) intron (NM_001354411, intron 14 of 34) -312964 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 557-176 chr6 147879007 147879423 + 2 NA Intergenic Intergenic 370525 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 177-127 chr5 35313446 35313573 + 2 NA Intergenic Intergenic -83022 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 245-204 chr2 161152083 161152306 + 2 NA intron (NM_004180, intron 1 of 7) L1MB5|LINE|L1 -8234 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 345-144 chr14 36062032 36062276 + 2 NA Intergenic Intergenic -8273 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 316-251 chr2 18073278 18073538 + 2 NA Intergenic LTR85a|LTR|Gypsy? 194741 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 599-129 chr8 10451438 10451793 + 2 NA Intergenic Intergenic -22950 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 631-63 chr2 42889132 42889573 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -96769 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 822-11 chr12 28578162 28578951 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -387818 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 225-363 chr8 111314033 111314191 + 2 NA Intergenic Intergenic -62527 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 370-480 chrX 6127925 6128261 + 2 NA intron (NM_001282145, intron 3 of 6) FLAM_C|SINE|Alu -98265 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 630-79 chr22 33866628 33867134 + 2 NA intron (NM_001362949, intron 1 of 15) L2a|LINE|L2 53547 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 448-156 chr3 42238883 42239165 + 2 NA Intergenic L1PA3|LINE|L1 24923 NM_001174138 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 352-84 chr11 97623656 97623859 + 2 NA Intergenic Intergenic 1115332 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 296-295 chr3 51776716 51776995 + 2 NA Intergenic Intergenic 2382 NM_001143833 440956 Hs.444316 NM_001143833 ENSG00000214686 IQCF6 - IQ motif containing F6 protein-coding 533-89 chr18 75325515 75325940 + 2 NA Intergenic L1MD1|LINE|L1 101976 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 430-40 chr10 91498037 91498381 + 2 NA intron (NM_182765, intron 16 of 20) intron (NM_182765, intron 16 of 20) 87924 NM_182765 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 442-213 chr4 87244629 87244904 + 2 NA Intergenic L1MB7|LINE|L1 -24148 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 208-148 chr20 41215231 41215364 + 2 NA intron (NM_015035, intron 2 of 3) intron (NM_015035, intron 2 of 3) 46274 NR_106931 102466912 NR_106931 ENSG00000276169 MIR6871 hsa-mir-6871 microRNA 6871 ncRNA 168-102 chr7 27443219 27443346 + 2 NA Intergenic L1MB8|LINE|L1 -172692 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 677-33 chr15 90408105 90408637 + 2 NA intron (NM_003870, intron 2 of 37) intron (NM_003870, intron 2 of 37) 20129 NM_003870 8826 Hs.430551 NM_003870 ENSG00000140575 IQGAP1 HUMORFA01|SAR1|p195 IQ motif containing GTPase activating protein 1 protein-coding 213-289 chr8 120423038 120423213 + 2 NA intron (NM_014078, intron 4 of 6) L1MEd|LINE|L1 22025 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 345-390 chr4 92962082 92962265 + 2 NA intron (NM_001286838, intron 2 of 14) L1MC1|LINE|L1 657774 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 296-469 chr8 100618914 100619069 + 2 NA promoter-TSS (NM_001363720) promoter-TSS (NM_001363720) -586 NM_001363720 169166 Hs.567758 NM_152628 ENSG00000174226 SNX31 - sorting nexin 31 protein-coding 292-38 chr10 32731107 32731359 + 2 NA intron (NM_001321115, intron 29 of 43) L1M5|LINE|L1 170239 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 369-299 chr4 103842139 103842468 + 2 NA Intergenic Intergenic -122318 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 334-57 chr10 63365257 63365472 + 2 NA intron (NM_001322258, intron 2 of 24) intron (NM_001322258, intron 2 of 24) 7684 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 233-101 chr14 75503649 75503801 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -18744 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 312-551 chr9 95703617 95703869 + 2 NA Intergenic Intergenic -171948 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 370-474 chr9 72559951 72560213 + 2 NA intron (NM_138691, intron 1 of 23) intron (NM_138691, intron 1 of 23) 38281 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 557-11 chr1 197192393 197192765 + 2 NA intron (NM_194314, intron 1 of 9) intron (NM_194314, intron 1 of 9) 7963 NM_194314 360023 Hs.529439 NM_194314 ENSG00000177888 ZBTB41 FRBZ1|ZNF924 zinc finger and BTB domain containing 41 protein-coding 399-55 chr11 50366727 50367119 + 2 NA Intergenic ALR/Alpha|Satellite|centr -42224 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 310-396 chr5 37877839 37878047 + 2 NA Intergenic MER121|DNA|TcMar? 37505 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 355-229 chr2 16313087 16313418 + 2 NA Intergenic L2a|LINE|L2 262825 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 330-388 chr4 113835562 113835760 + 2 NA Intergenic Intergenic -73734 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 204-147 chr2 86287832 86287999 + 2 NA intron (NM_001164730, intron 1 of 6) L1ME3C|LINE|L1 49711 NM_022912 65055 Hs.368884 NM_022912 ENSG00000068615 REEP1 C2orf23|HMN5B|SPG31|Yip2a receptor accessory protein 1 protein-coding 1020-5 chr14 86728583 86729329 + 2 NA Intergenic Intergenic -176822 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 767-8 chr11 30221569 30222021 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -9219 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 449-37 chr10 114639888 114640268 + 2 NA intron (NM_001322886, intron 1 of 20) MER45B|DNA|hAT-Tip100 -7681 NM_001352440 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 417-246 chr6 117063527 117063913 + 2 NA Intergenic Intergenic 186478 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 355-11 chr1 91746725 91747048 + 2 NA intron (NR_036634, intron 5 of 17) MIRc|SINE|MIR 139265 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 309-419 chr5 8656048 8656351 + 2 NA Intergenic Intergenic -183533 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 363-322 chr4 47834754 47835007 + 2 NA intron (NR_125881, intron 1 of 2) intron (NR_125881, intron 1 of 2) 3187 NM_001278586 10699 Hs.518618 NM_006587 ENSG00000145244 CORIN ATC2|CRN|Lrp4|PEE5|TMPRSS10 corin, serine peptidase protein-coding 553-140 chr20 18102953 18103475 + 2 NA Intergenic AluSz6|SINE|Alu -34649 NM_001164811 100303755 Hs.488051 NM_001164811 ENSG00000232838 PET117 CSRP2BP PET117 cytochrome c oxidase chaperone protein-coding 212-164 chr2 115821936 115822098 + 2 NA intron (NM_001321912, intron 22 of 25) L1ME1|LINE|L1 478202 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 164-97 chr5 44109042 44109163 + 2 NA Intergenic Intergenic -279630 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 128-33 chr2 123860505 123860615 + 2 NA Intergenic L1PA10|LINE|L1 164614 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 323-601 chrX 146405271 146405528 + 2 NA Intergenic MST-int|LTR|ERVL-MaLR -377527 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 285-219 chr2 157959226 157959495 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -35819 NM_001135098 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 193-165 chr5 29278187 29278329 + 2 NA Intergenic Intergenic 117718 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 278-325 chr5 10022584 10022760 + 2 NA Intergenic L1M3f|LINE|L1 -118848 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 340-549 chr8 119956760 119956938 + 2 NA intron (NM_022783, intron 3 of 8) AluSx1|SINE|Alu 83127 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 191-174 chr5 94620785 94620920 + 2 NA intron (NM_032290, intron 1 of 20) intron (NM_032290, intron 1 of 20) 2183 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 454-295 chr7 54716310 54716624 + 2 NA Intergenic Intergenic 42744 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 419-267 chr7 11549194 11549459 + 2 NA intron (NM_015204, intron 4 of 26) L1PA10|LINE|L1 282872 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 285-299 chr4 28929919 28930167 + 2 NA Intergenic Intergenic -66741 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 491-7 chr1 191226544 191226874 + 2 NA intron (NR_146892, intron 1 of 1) intron (NR_146892, intron 1 of 1) 1789 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 251-165 chr2 35050199 35050392 + 2 NA Intergenic L1MD1|LINE|L1 372738 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 463-284 chr8 82090497 82090932 + 2 NA Intergenic MLT2B1|LTR|ERVL -248428 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 186-163 chr8 88929174 88929335 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -601771 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 277-390 chr7 122642314 122642525 + 2 NA intron (NM_001167940, intron 3 of 29) intron (NM_001167940, intron 3 of 29) 56698 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 714-16 chr12 22693923 22694461 + 2 NA Intergenic LTR9|LTR|ERV1 69021 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 216-145 chr18 39433344 39433523 + 2 NA intron (NR_024391, intron 3 of 3) MIRb|SINE|MIR 188742 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 372-235 chr2 77701391 77701590 + 2 NA Intergenic Intergenic -179057 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 257-338 chr5 162556320 162556495 + 2 NA Intergenic MER77|LTR|ERVL 488765 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 212-89 chr12 114464135 114464277 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -55764 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 359-144 chr14 52344161 52344377 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 29957 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 342-107 chr12 18702348 18702600 + 2 NA intron (NM_033123, intron 7 of 14) intron (NM_033123, intron 7 of 14) 35035 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 225-378 chr8 137922908 137923079 + 2 NA intron (NR_161374, intron 2 of 7) MLT2B2|LTR|ERVL 160552 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 319-554 chr8 133303431 133303706 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -6264 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 419-122 chr18 23819084 23819459 + 2 NA intron (NM_001127717, intron 18 of 73) intron (NM_001127717, intron 18 of 73) -53749 NM_001127718 3909 Hs.436367 NM_000227 ENSG00000053747 LAMA3 BM600|E170|LAMNA|LOCS laminin subunit alpha 3 protein-coding 375-244 chr21 29682317 29682542 + 2 NA intron (NM_001320621, intron 1 of 13) intron (NM_001320621, intron 1 of 13) -65746 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 228-297 chr6 123663352 123663555 + 2 NA Intergenic Intergenic -26360 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 259-340 chr6 52467610 52467819 + 2 NA intron (NR_033327, intron 5 of 9) intron (NR_033327, intron 5 of 9) 46706 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 475-247 chr6 163715259 163715692 + 2 NA Intergenic Intergenic -43991 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 500-201 chr4 57752850 57753262 + 2 NA Intergenic Intergenic 327184 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 531-21 chr10 39224539 39224908 + 2 NA Intergenic ALR/Alpha|Satellite|centr 528127 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 353-85 chr11 60680829 60681171 + 2 NA intron (NR_026946, intron 6 of 6) L1M4|LINE|L1 -18612 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 379-113 chr16 47792550 47792856 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -65878 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 336-92 chr11 43074170 43074347 + 2 NA Intergenic Intergenic 195111 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 431-95 chr16 5737288 5737607 + 2 NA Intergenic AluSz|SINE|Alu 104980 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 296-332 chr4 41032056 41032294 + 2 NA intron (NM_173075, intron 5 of 16) intron (NM_173075, intron 5 of 16) -174983 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 935-27 chr3 28430292 28430983 + 2 NA intron (NM_001040432, intron 3 of 9) THE1C|LTR|ERVL-MaLR 81488 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 503-202 chr3 131126574 131126918 + 2 NA intron (NM_001353036, intron 5 of 14) L1MEg|LINE|L1 99018 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 232-88 chr13 90026856 90027086 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 92746 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 575-188 chr7 81106382 81106770 + 2 NA Intergenic MER132|DNA|TcMar-Pogo -184187 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 269-289 chr4 99486080 99486281 + 2 NA Intergenic MLT2C1|LTR|ERVL -24841 NM_032149 84103 Hs.97501 NM_032149 ENSG00000138813 C4orf17 - chromosome 4 open reading frame 17 protein-coding 176-113 chr5 124011393 124011504 + 2 NA Intergenic Intergenic 427072 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 172-112 chr6 64213881 64214018 + 2 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 407113 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 341-570 chr9 112896020 112896259 + 2 NA Intergenic Intergenic -5263 NM_033051 57864 Hs.512668 NM_033051 ENSG00000119457 SLC46A2 Ly110|TSCOT solute carrier family 46 member 2 protein-coding 481-186 chr22 34994854 34995178 + 2 NA intron (NR_138042, intron 1 of 4) MLT2B1|LTR|ERVL 2900 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 228-240 chr4 52854159 52854336 + 2 NA Intergenic Intergenic -8070 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 256-216 chr2 136814004 136814190 + 2 NA intron (NM_001316349, intron 1 of 27) intron (NM_001316349, intron 1 of 27) 48552 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 180-125 chr5 5929158 5929329 + 2 NA Intergenic Intergenic 408049 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 316-494 chr6 133224751 133225015 + 2 NA Intergenic Intergenic -16474 NM_004100 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 282-162 chr17 39860920 39861118 + 2 NA intron (NM_012481, intron 1 of 7) intron (NM_012481, intron 1 of 7) 3169 NM_001284514 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 258-22 chr1 193922133 193922317 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 617480 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 315-313 chr3 90348192 90348476 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1240713 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 351-156 chr16 10346071 10346299 + 2 NA Intergenic L1PA16|LINE|L1 -39876 NM_001352120 80063 Hs.513343 NM_024997 ENSG00000166669 ATF7IP2 MCAF2 activating transcription factor 7 interacting protein 2 protein-coding 356-191 chr17 40758058 40758300 + 2 NA Intergenic L1MA8|LINE|L1 -2848 NM_181534 147183 Hs.55412 NM_181534 ENSG00000204897 KRT25 ARWH3|KRT24IRS1|KRT25A keratin 25 protein-coding 320-31 chr1 180822160 180822439 + 2 NA intron (NR_137330, intron 7 of 12) L2a|LINE|L2 -90598 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 207-34 chr10 43897733 43897906 + 2 NA Intergenic LTR16E2|LTR|ERVL -11477 NR_136147 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 136-67 chr4 101748576 101748658 + 2 NA Intergenic Intergenic -41990 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 476-252 chr7 87019319 87019693 + 2 NA intron (NM_001142749, intron 1 of 21) intron (NM_001142749, intron 1 of 21) 20728 NM_001291990 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 410-277 chr7 41750483 41750783 + 2 NA intron (NR_027118, intron 2 of 3) MER41B|LTR|ERV1 -47543 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 501-145 chr21 28535494 28535917 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -3613 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 458-133 chr2 83239494 83239750 + 2 NA Intergenic Intergenic -283192 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 471-159 chr22 28374162 28374456 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -85560 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 238-232 chr3 33509706 33509919 + 2 NA intron (NM_001365634, intron 34 of 35) intron (NM_001365634, intron 34 of 35) -69407 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 436-223 chr4 154221936 154222285 + 2 NA Intergenic Intergenic 269689 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 331-92 chr11 70806683 70806880 + 2 NA intron (NM_012309, intron 12 of 24) intron (NM_012309, intron 12 of 24) -56009 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 247-123 chr14 105122716 105122895 + 2 NA Intergenic L1MB7|LINE|L1 28059 NR_106823 102465458 NR_106823 ENSG00000273778 MIR6765 hsa-mir-6765 microRNA 6765 ncRNA 168-67 chr2 194724447 194724581 + 2 NA Intergenic Intergenic -6081 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 317-188 chr17 55512352 55512532 + 2 NA Intergenic L2b|LINE|L2 -90607 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 336-184 chr15 95978457 95978732 + 2 NA Intergenic Intergenic 149247 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 433-26 chr10 62194766 62195150 + 2 NA 3' UTR (NM_145307, exon 12 of 12) 3' UTR (NM_145307, exon 12 of 12) 73886 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 410-21 chr1 225335715 225336100 + 2 NA intron (NM_001367479, intron 66 of 85) (ACATAT)n|Simple_repeat|Simple_repeat 92131 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 223-213 chr3 71797987 71798163 + 2 NA Intergenic MER3|DNA|hAT-Charlie -12927 NM_021935 60675 Hs.528665 NM_021935 ENSG00000163421 PROK2 BV8|HH4|KAL4|MIT1|PK2 prokineticin 2 protein-coding 361-299 chr3 120344230 120344541 + 2 NA intron (NM_001099678, intron 1 of 3) intron (NM_001099678, intron 1 of 3) 4969 NM_001099678 116064 Hs.518084 NM_001099678 ENSG00000163428 LRRC58 - leucine rich repeat containing 58 protein-coding 382-9 chr1 68873545 68873768 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -182242 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 293-37 chr10 63792101 63792263 + 2 NA Intergenic L1MA2|LINE|L1 -270292 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 375-7 chr1 68612799 68613108 + 2 NA Intergenic Intergenic -115871 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 328-10 chr1 63954015 63954312 + 2 NA intron (NM_005012, intron 1 of 8) MLT1J|LTR|ERVL-MaLR 158042 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 321-130 chr12 40081673 40081838 + 2 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 24326 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 462-297 chr9 77587827 77588117 + 2 NA intron (NM_004297, intron 1 of 6) MLT1D|LTR|ERVL-MaLR 60350 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 643-51 chr2 7759373 7759818 + 2 NA Intergenic L1M5|LINE|L1 140060 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 504-83 chr15 87287840 87288151 + 2 NA Intergenic Intergenic -288934 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 542-237 chr9 82949311 82949739 + 2 NA Intergenic Intergenic 113617 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 287-375 chr7 27405618 27405849 + 2 NA Intergenic Intergenic -158504 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 328-382 chr4 161387 161666 + 2 NA exon (NM_001289930, exon 4 of 4) exon (NM_001289930, exon 4 of 4) 33405 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 363-172 chr17 6768783 6768996 + 2 NA intron (NR_046398, intron 3 of 4) L1MEd|LINE|L1 -7326 NM_153230 162517 Hs.368364 NM_153230 ENSG00000177294 FBXO39 CT144|Fbx39 F-box protein 39 protein-coding 252-122 chr14 84529041 84529254 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -742785 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 189-15 chr10 30340283 30340459 + 2 NA exon (NM_018109, exon 3 of 9) exon (NM_018109, exon 3 of 9) 8967 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 562-143 chr3 76424186 76424558 + 2 NA Intergenic Intergenic -615727 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 150-89 chr5 29320656 29320731 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 75283 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 389-92 chr13 61261945 61262285 + 2 NA Intergenic MIRb|SINE|MIR -62235 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 255-236 chr20 61439893 61440053 + 2 NA intron (NM_001794, intron 2 of 15) Tigger18a|DNA|TcMar-Tigger -59448 NM_001252338 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 693-84 chr5 156207409 156207828 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -119139 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 573-164 chr6 51296167 51296644 + 2 NA Intergenic (AATT)n|Simple_repeat|Simple_repeat -325465 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 195-20 chr10 43722838 43723016 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 55898 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 294-264 chr20 56081920 56082110 + 2 NA Intergenic L1ME1|LINE|L1 -76496 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 568-18 chr10 79284484 79284894 + 2 NA intron (NM_020338, intron 8 of 24) MIRb|SINE|MIR -62780 NM_005729 10105 Hs.381072 NM_005729 ENSG00000108179 PPIF CYP3|CyP-M|Cyp-D|CypD peptidylprolyl isomerase F protein-coding 271-450 chr8 104702329 104702492 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -113386 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 345-197 chr16 81964242 81964512 + 2 NA Intergenic L1ME3|LINE|L1 47093 NM_145168 93517 Hs.87779 NM_145168 ENSG00000184860 SDR42E1 HSPC105 short chain dehydrogenase/reductase family 42E, member 1 protein-coding 212-257 chr5 75957527 75957730 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -125755 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 291-397 chr7 10475650 10475862 + 2 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -226920 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 409-232 chr4 151818852 151819162 + 2 NA Intergenic Intergenic -57984 NM_001363341 5188 Hs.119316 NM_004564 ENSG00000059691 GATB HSPC199|PET112|PET112L glutamyl-tRNA amidotransferase subunit B protein-coding 289-474 chr8 129004756 129004977 + 2 NA Intergenic Intergenic -38865 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 558-181 chr5 147267562 147267943 + 2 NA intron (NM_001112724, intron 2 of 12) intron (NM_001112724, intron 2 of 12) 32726 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 347-279 chr21 17361202 17361450 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -77564 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 531-5 chr1 78558838 78559352 + 2 NA Intergenic L1PA17|LINE|L1 -61353 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 128-84 chr9 29121276 29121351 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 90986 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 498-208 chr5 26781101 26781430 + 2 NA Intergenic MER65D|LTR|ERV1 257321 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 325-48 chr10 7019751 7019940 + 2 NA Intergenic L1MA9|LINE|L1 166939 NR_132972 106635547 NR_132972 SNORD129 - small nucleolar RNA, C/D box 129 snoRNA 445-52 chr12 83397058 83397448 + 2 NA Intergenic Intergenic 710098 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 303-25 chr1 232658228 232658445 + 2 NA Intergenic Intergenic -59735 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 389-379 chr9 36007804 36008144 + 2 NA Intergenic Intergenic -28939 NM_001316345 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 253-21 chr1 170703509 170703737 + 2 NA intron (NM_022716, intron 1 of 3) MIRc|SINE|MIR 39492 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 312-440 chr5 180439944 180440231 + 2 NA Intergenic Intergenic -54292 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 343-190 chr16 78771760 78772021 + 2 NA intron (NM_001291997, intron 7 of 7) L1MB4|LINE|L1 672236 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 342-214 chr2 124866 125176 + 2 NA Intergenic Intergenic -78516 NM_001077710 642273 Hs.8379 NM_001077710 ENSG00000184731 FAM110C - family with sequence similarity 110 member C protein-coding 361-136 chr14 48763461 48763779 + 2 NA Intergenic Intergenic 822760 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 148-23 chr13 100107545 100107656 + 2 NA intron (NR_148031, intron 2 of 22) intron (NR_148031, intron 2 of 22) 18507 NR_148028 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 345-417 chr5 44084811 44085076 + 2 NA Intergenic Intergenic -303789 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 329-536 chr7 49667194 49667384 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -106349 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 412-329 chr8 79270926 79271258 + 2 NA Intergenic L2a|LINE|L2 -61096 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 286-234 chr2 218079370 218079545 + 2 NA intron (NR_034176, intron 11 of 13) L2a|LINE|L2 10442 NM_198483 285180 Hs.570069 NM_198483 ENSG00000188282 RUFY4 ZFYVE31 RUN and FYVE domain containing 4 protein-coding 282-194 chr2 22607217 22607458 + 2 NA Intergenic Intergenic 70858 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 118-39 chr4 160632347 160632416 + 2 NA Intergenic Intergenic -854597 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 553-135 chr2 173290219 173290696 + 2 NA Intergenic MER112|DNA|hAT-Charlie -8421 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 813-13 chr15 88064901 88065429 + 2 NA intron (NM_001007156, intron 13 of 15) intron (NM_001007156, intron 13 of 15) -118897 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 441-232 chr6 145649694 145650043 + 2 NA intron (NM_001368131, intron 2 of 3) MER58A|DNA|hAT-Charlie 37009 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 273-133 chr14 57579689 57579851 + 2 NA 3' UTR (NM_001352016, exon 4 of 4) 3' UTR (NM_001352016, exon 4 of 4) -85913 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 408-63 chr11 42960766 42961024 + 2 NA Intergenic MIR3|SINE|MIR 308474 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 202-100 chr18 30738441 30738607 + 2 NA Intergenic Intergenic 304218 NM_001941 1825 Hs.41690 NM_001941 ENSG00000134762 DSC3 CDHF3|DSC|DSC1|DSC2|DSC4|HT-CP desmocollin 3 protein-coding 259-261 chr3 143829856 143830049 + 2 NA intron (NM_173653, intron 2 of 15) MIRb|SINE|MIR 18516 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 984 chr1 47445858 47446671 + 2 NA Intergenic Intergenic -8947 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 209-141 chr19 37521847 37521985 + 2 NA intron (NM_001013659, intron 3 of 7) (TA)n|Simple_repeat|Simple_repeat -14829 NR_110723 101927720 Hs.18070 NR_110723 ENSG00000266916 ZNF793-AS1 - ZNF793 antisense RNA 1 (head to head) ncRNA 380-333 chr6 39330209 39330407 + 2 NA 3' UTR (NM_145027, exon 23 of 23) 3' UTR (NM_145027, exon 23 of 23) -7340 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 502-263 chr8 81451272 81451704 + 2 NA Intergenic L1MEg|LINE|L1 -4049 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 329-253 chr2 4535179 4535380 + 2 NA Intergenic Intergenic 120943 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 250-377 chr6 93642523 93642718 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -61397 NR_152794 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 519-80 chr17 71512639 71513005 + 2 NA Intergenic Intergenic -310643 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 276-180 chr16 60686736 60686970 + 2 NA Intergenic Intergenic -327060 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 248-409 chr8 114848621 114848833 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie 819286 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 286-410 chr7 29784702 29784890 + 2 NA Intergenic AluJr4|SINE|Alu -21758 NM_001080529 644150 Hs.380698 NM_001080529 ENSG00000122574 WIPF3 CR16 WAS/WASL interacting protein family member 3 protein-coding 293-42 chr10 78710120 78710330 + 2 NA Intergenic Intergenic 357223 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 553-186 chr5 11827003 11827354 + 2 NA intron (NM_001288717, intron 1 of 20) L1ME1|LINE|L1 77268 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 195-188 chr5 26506560 26506727 + 2 NA Intergenic Intergenic 531943 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 303-214 chr2 77179643 77179807 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 193760 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 314-217 chr16 80319743 80319923 + 2 NA intron (NR_120307, intron 2 of 5) FordPrefect|DNA|hAT-Tip100 -220901 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 272-29 chr1 238170073 238170232 + 2 NA Intergenic L1MB8|LINE|L1 -279230 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 175-104 chr3 161877326 161877433 + 2 NA Intergenic L1PA16|LINE|L1 380571 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 719-68 chr6 73978359 73979027 + 2 NA Intergenic Intergenic -90758 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 228-53 chr11 33463496 33463677 + 2 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 87478 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 347-413 chr5 138087877 138088190 + 2 NA intron (NM_001300939, intron 3 of 4) intron (NM_001300939, intron 3 of 4) 4000 NM_001300938 7478 Hs.591274 NM_031933 ENSG00000061492 WNT8A WNT8D Wnt family member 8A protein-coding 378-395 chr7 31315279 31315509 + 2 NA Intergenic Intergenic 25332 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 243-198 chr2 39594393 39594593 + 2 NA intron (NR_037875, intron 5 of 5) MIRc|SINE|MIR -71005 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 320-264 chr2 80311873 80312054 + 2 NA intron (NM_001282600, intron 1 of 11) intron (NM_001282600, intron 1 of 11) -1416 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 405-284 chr6 108613569 108613880 + 2 NA intron (NM_201559, intron 2 of 3) L1ME1|LINE|L1 52807 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 353-512 chr8 50805332 50805567 + 2 NA Intergenic MER61-int|LTR|ERV1 641318 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 314-239 chr18 22409914 22410081 + 2 NA Intergenic Intergenic 7918 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 387-22 chr1 218095623 218095936 + 2 NA Intergenic MER21B|LTR|ERVL 52274 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 457-127 chr2 172347398 172347707 + 2 NA Intergenic L1MEc|LINE|L1 -79784 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 285-423 chr8 113484826 113485067 + 2 NA Intergenic L1MA2|LINE|L1 -48007 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 303-359 chr5 65845310 65845598 + 2 NA Intergenic L1MB3|LINE|L1 -81100 NM_001006600 55914 Hs.591774 NM_018695 ENSG00000112851 ERBIN ERBB2IP|HEL-S-78|LAP2 erbb2 interacting protein protein-coding 225-130 chr17 73446988 73447201 + 2 NA intron (NM_001144952, intron 5 of 44) intron (NM_001144952, intron 5 of 44) -66589 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 300-227 chr2 234002737 234002959 + 2 NA intron (NM_024080, intron 22 of 25) intron (NM_024080, intron 22 of 25) -47854 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 548-61 chr13 44559999 44560415 + 2 NA intron (NM_183422, intron 1 of 2) AluJb|SINE|Alu -15689 NR_038381 641467 Hs.624196 NR_038381 ENSG00000278156 TSC22D1-AS1 - TSC22D1 antisense RNA 1 ncRNA 526-147 chr2 215662706 215663072 + 2 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -55154 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 452-15 chr1 179494992 179495352 + 2 NA intron (NM_144696, intron 20 of 25) L1ME1|LINE|L1 80776 NM_001297575 7827 Hs.412710 NM_014625 ENSG00000116218 NPHS2 PDCN|SRN1 NPHS2 stomatin family member, podocin protein-coding 281-44 chr10 82476106 82476355 + 2 NA intron (NR_163253, intron 3 of 10) L1MB3|LINE|L1 -243310 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 189-30 chr11 83393446 83393616 + 2 NA Intergenic Intergenic -107124 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 185-150 chr4 84331145 84331313 + 2 NA Intergenic L1MB8|LINE|L1 -32060 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 299-396 chr6 68865139 68865408 + 2 NA intron (NM_001704, intron 3 of 31) LTR78B|LTR|ERV1 229991 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 262-328 chr4 132296788 132297019 + 2 NA Intergenic L1PA14|LINE|L1 -294186 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 337-455 chr5 97581449 97581683 + 2 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 76870 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 322-99 chr11 99413038 99413250 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -143001 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 770-42 chr2 133348889 133349459 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 82979 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 327-268 chr2 114305840 114306088 + 2 NA Intergenic L1MD1|LINE|L1 -136677 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 338-112 chr11 112819835 112820098 + 2 NA Intergenic Intergenic -141454 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 175-87 chr2 192318737 192318872 + 2 NA Intergenic L1ME1|LINE|L1 -123871 NM_001305134 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 388-150 chr2 17938166 17938424 + 2 NA Intergenic Intergenic 59628 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 350-124 chr14 23217573 23217817 + 2 NA intron (NM_001370218, intron 2 of 15) L1MA2|LINE|L1 -20241 NM_001282322 100507650 NM_001282322 ENSG00000215277 RNF212B C14orf164 ring finger protein 212B protein-coding 295-274 chr21 35748154 35748370 + 2 NA Intergenic Intergenic 27547 NR_030414 768219 NR_030414 ENSG00000211590 MIR802 MIRN802|hsa-mir-802 microRNA 802 ncRNA 283-479 chrX 86339349 86339533 + 2 NA intron (NM_001139515, intron 1 of 11) intron (NM_001139515, intron 1 of 11) 76473 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 649-94 chr6 19045642 19046157 + 2 NA Intergenic Intergenic 134581 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 642-30 chr13 108505433 108505915 + 2 NA Intergenic L1MB2|LINE|L1 -90231 NM_015011 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 343-26 chr1 113429263 113429510 + 2 NA intron (NM_001142782, intron 1 of 20) MER51A|LTR|ERV1 38871 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 447-46 chr11 112210160 112210473 + 2 NA intron (NM_031938, intron 8 of 11) L1MEg|LINE|L1 -16112 NM_000317 5805 Hs.503860 NM_000317 ENSG00000150787 PTS PTPS 6-pyruvoyltetrahydropterin synthase protein-coding 278-449 chr9 27595375 27595595 + 2 NA Intergenic L2a|LINE|L2 -21619 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 426-312 chr9 79919911 79920247 + 2 NA intron (NR_121213, intron 1 of 2) L1MA3|LINE|L1 -54944 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 276-427 chr7 36835560 36835730 + 2 NA Intergenic Intergenic 83787 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 439-201 chr4 16200916 16201221 + 2 NA intron (NM_153365, intron 3 of 13) intron (NM_153365, intron 3 of 13) 25403 NM_153365 202018 Hs.479223 NM_153365 ENSG00000169762 TAPT1 CMVFR|OCLSBG transmembrane anterior posterior transformation 1 protein-coding 360-257 chr20 100833 101186 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 13337 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 266-369 chr6 100846124 100846374 + 2 NA intron (NM_006828, intron 4 of 41) intron (NM_006828, intron 4 of 41) 35080 NM_006828 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 473-217 chr5 53367498 53367831 + 2 NA Intergenic Intergenic -112965 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 247-446 chrX 85392391 85392585 + 2 NA Intergenic Intergenic -12823 NM_024921 79983 Hs.267038 NM_024921 ENSG00000124429 POF1B POF|POF2B POF1B actin binding protein protein-coding 383-197 chr2 107445547 107445773 + 2 NA Intergenic L1M5|LINE|L1 -83759 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 318-195 chr16 48190297 48190473 + 2 NA intron (NM_001370497, intron 20 of 29) AluJb|SINE|Alu 41886 NM_033151 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 381-199 chr2 112992715 112992955 + 2 NA Intergenic L1MA8|LINE|L1 -12624 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 266-355 chr5 177425114 177425326 + 2 NA Intergenic L2b|LINE|L2 -1456 NM_001004105 2870 Hs.235116 NM_002082 ENSG00000198055 GRK6 GPRK6 G protein-coupled receptor kinase 6 protein-coding 356-29 chr1 221617028 221617332 + 2 NA Intergenic L1MEd|LINE|L1 119720 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 390-175 chr2 30764787 30764991 + 2 NA intron (NM_144575, intron 5 of 22) intron (NM_144575, intron 5 of 22) 42557 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 374-90 chr13 89021193 89021541 + 2 NA Intergenic Intergenic -213924 NR_047025 100874172 Hs.569291 NR_047025 LINC00440 - long intergenic non-protein coding RNA 440 ncRNA 454-64 chr11 129021026 129021362 + 2 NA intron (NM_001142685, intron 10 of 21) intron (NM_001142685, intron 10 of 21) 2994 NM_014715 9743 Hs.440379 NM_014715 ENSG00000134909 ARHGAP32 GC-GAP|GRIT|PX-RICS|RICS|p200RhoGAP|p250GAP Rho GTPase activating protein 32 protein-coding 287-413 chr8 112216238 112216447 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -427151 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 498-174 chr3 97368563 97369027 + 2 NA intron (NM_001080448, intron 5 of 17) L2b|LINE|L2 -70812 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 420-111 chr18 63090298 63090559 + 2 NA Intergenic Intergenic 228952 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 318-94 chr11 8498113 8498283 + 2 NA intron (NM_001352388, intron 1 of 14) L1M4|LINE|L1 95778 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 353-281 chr20 37432720 37432906 + 2 NA Intergenic Intergenic 86685 NM_198291 6714 Hs.195659 NM_005417 ENSG00000197122 SRC ASV|SRC1|THC6|c-SRC|p60-Src SRC proto-oncogene, non-receptor tyrosine kinase protein-coding 472-48 chr11 114993488 114993773 + 2 NA Intergenic L2a|LINE|L2 315103 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 210-99 chr17 65750338 65750497 + 2 NA intron (NM_001353129, intron 22 of 26) (GT)n|Simple_repeat|Simple_repeat 76034 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 285-356 chr5 148585847 148586048 + 2 NA intron (NM_001040172, intron 1 of 5) L2a|LINE|L2 51114 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 493-166 chr2 139545980 139546338 + 2 NA Intergenic MER65-int|LTR|ERV1 648835 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 330-138 chr13 40333586 40333890 + 2 NA Intergenic L1MA8|LINE|L1 -113236 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 247-29 chr1 234914806 234915038 + 2 NA Intergenic Intergenic 49077 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 287-141 chr14 97836246 97836503 + 2 NA Intergenic Intergenic -73543 NR_146447 100132612 Hs.587781 NR_146447 ENSG00000258869 LINC02312 - long intergenic non-protein coding RNA 2312 ncRNA 220-106 chr14 40123764 40123928 + 2 NA Intergenic Intergenic -691346 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 388-10 chr1 90878519 90878843 + 2 NA Intergenic L1MB7|LINE|L1 26922 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 324-20 chr1 112037511 112037756 + 2 NA Intergenic Intergenic 47097 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 341-482 chr7 4463726 4464015 + 2 NA Intergenic Intergenic -218425 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 249-298 chr4 62253084 62253278 + 2 NA Intergenic Intergenic -91416 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 761-62 chr6 146016417 146016957 + 2 NA Intergenic HAL1|LINE|L1 -11020 NM_001278065 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 392-73 chr12 125681237 125681501 + 2 NA Intergenic MIRb|SINE|MIR 58917 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 601-135 chr6 142790549 142791060 + 2 NA intron (NM_006734, intron 2 of 9) intron (NM_006734, intron 2 of 9) -152915 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 333-14 chr1 57929171 57929419 + 2 NA intron (NM_021080, intron 1 of 16) L1MC1|LINE|L1 68714 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 270-101 chr13 92097513 92097713 + 2 NA intron (NM_004466, intron 6 of 7) MLT1A1-int|LTR|ERVL-MaLR 254594 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 451-220 chr7 83092982 83093406 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 69690 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 250-23 chr1 185800339 185800546 + 2 NA intron (NM_031935, intron 1 of 106) intron (NM_031935, intron 1 of 106) 66051 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 184-163 chr8 17308811 17308945 + 2 NA intron (NM_004686, intron 10 of 13) intron (NM_004686, intron 10 of 13) 61920 NM_001363172 137492 Hs.343873 NM_152415 ENSG00000155975 VPS37A HCRP1|PQBP2|SPG53 VPS37A subunit of ESCRT-I protein-coding 320-484 chr6 61616123 61616346 + 2 NA intron (NR_146870, intron 13 of 15) intron (NR_146870, intron 13 of 15) 42104 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 707-90 chr6 78014287 78014775 + 2 NA Intergenic Intergenic 361492 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 305-95 chr11 73765970 73766229 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -5025 NM_001243718 5870 Hs.503222 NM_002869 ENSG00000175582 RAB6A RAB6 RAB6A, member RAS oncogene family protein-coding 849-10 chr13 97766529 97767103 + 2 NA Intergenic Intergenic -186859 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 322-186 chr16 48656216 48656388 + 2 NA Intergenic L1M4c|LINE|L1 -46122 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 426-134 chr2 71982906 71983211 + 2 NA Intergenic L1PB3|LINE|L1 164804 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 325-498 chr7 42776428 42776660 + 2 NA Intergenic L1M5|LINE|L1 -70097 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 331-42 chr10 14122847 14123045 + 2 NA intron (NR_134578, intron 2 of 3) L1MA5A|LINE|L1 48662 NR_120638 101928453 Hs.650212 NR_120638 LOC101928453 - uncharacterized LOC101928453 ncRNA 214-256 chr5 8665668 8665825 + 2 NA Intergenic MER68|LTR|ERVL -173986 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 251-249 chr3 131925463 131925653 + 2 NA intron (NM_001289112, intron 1 of 15) intron (NM_001289112, intron 1 of 15) 60373 NR_049890 100847040 NR_049890 ENSG00000265859 MIR5704 - microRNA 5704 ncRNA 211-251 chr5 171689606 171689796 + 2 NA Intergenic MLT2D|LTR|ERVL -96171 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 238-88 chr13 36539011 36539167 + 2 NA Intergenic L1MEc|LINE|L1 106594 NM_003914 8900 Hs.417050 NM_003914 ENSG00000133101 CCNA1 CT146 cyclin A1 protein-coding 256-17 chr1 106007356 106007572 + 2 NA intron (NR_146609, intron 3 of 5) L1MC1|LINE|L1 20789 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 330-489 chr7 39088183 39088440 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -74744 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 312-358 chr4 17072940 17073218 + 2 NA Intergenic L3|LINE|CR1 112978 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 320-332 chr3 6245801 6246088 + 2 NA Intergenic Intergenic 559505 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 348-90 chr11 92166273 92166455 + 2 NA Intergenic Intergenic -58670 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 313-100 chr11 133002168 133002333 + 2 NA intron (NM_001012393, intron 1 of 7) MIRb|SINE|MIR -58482 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 346-296 chr22 49126826 49127074 + 2 NA Intergenic L1ME3D|LINE|L1 260180 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 320-349 chr3 62419003 62419182 + 2 NA intron (NM_003716, intron 28 of 29) intron (NM_003716, intron 28 of 29) -45542 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 293-227 chr20 8674870 8675108 + 2 NA intron (NM_182734, intron 9 of 32) intron (NM_182734, intron 9 of 32) -156196 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 442-89 chr15 36373991 36374347 + 2 NA Intergenic Intergenic -205457 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 342-238 chr2 75706743 75706998 + 2 NA intron (NM_001201335, intron 1 of 2) intron (NM_001201335, intron 1 of 2) 4045 NM_003203 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 566-155 chr5 46063853 46064316 + 2 NA Intergenic ALR/Alpha|Satellite|centr -367704 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 180-155 chr7 43149632 43149777 + 2 NA intron (NR_135295, intron 5 of 6) L1MC4a|LINE|L1 -1191 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 231-211 chr22 48349242 48349406 + 2 NA Intergenic (CACA)n|Simple_repeat|Simple_repeat 74960 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 281-411 chr7 37529999 37530143 + 2 NA Intergenic Intergenic -80745 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 529-59 chr13 84193317 84193799 + 2 NA intron (NR_046871, intron 1 of 6) Charlie24|DNA|hAT-Charlie 52956 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 326-475 chr6 156500926 156501215 + 2 NA Intergenic Intergenic 122320 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 330-136 chr12 133216990 133217267 + 2 NA Intergenic Intergenic 18708 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 297-380 chr5 126740213 126740473 + 2 NA Intergenic AluJb|SINE|Alu 36143 NR_134485 102723557 Hs.582207 NR_134485 ENSG00000251072 LMNB1-DT - LMNB1 divergent transcript ncRNA 539-161 chr5 10384944 10385393 + 2 NA intron (NM_005885, intron 4 of 25) L1ME3|LINE|L1 -17196 NR_162106 113218502 NR_162106 MIR10397 - microRNA 10397 ncRNA 305-575 chrX 146390977 146391233 + 2 NA Intergenic L1M1|LINE|L1 -363233 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 361-122 chr12 127735747 127735933 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -80252 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 346-335 chr3 188989334 188989594 + 2 NA Intergenic Intergenic -41825 NR_046873 100874043 Hs.616287 NR_046873 ENSG00000234076 TPRG1-AS1 - TPRG1 antisense RNA 1 ncRNA 456-287 chr6 136884355 136884735 + 2 NA intron (NM_000288, intron 8 of 9) A-rich|Low_complexity|Low_complexity -37756 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 597-49 chr14 66086234 66086626 + 2 NA Intergenic AluSx|SINE|Alu -399941 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 493-266 chr6 166525303 166525682 + 2 NA intron (NM_001006932, intron 4 of 21) intron (NM_001006932, intron 4 of 21) -16059 NR_031734 100302141 NR_031734 ENSG00000222958 MIR1913 MIRN1913|hsa-mir-1913 microRNA 1913 ncRNA 416-40 chr10 53090307 53090575 + 2 NA Intergenic LTR35B|LTR|ERV1 -318741 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 178-147 chr8 92577231 92577334 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 78212 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 306-407 chr5 117740094 117740301 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 9836 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 174-123 chr6 45301655 45301798 + 2 NA intron (NM_001350325, intron 2 of 10) L2c|LINE|L2 -26591 NM_001015051 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 299-22 chr1 116266355 116266555 + 2 NA Intergenic Intergenic -106789 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 334-401 chr4 159058589 159058918 + 2 NA Intergenic Intergenic -23524 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 411-51 chr11 25093444 25093696 + 2 NA Intergenic Intergenic 596517 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 547-99 chr2 75376992 75377457 + 2 NA Intergenic L1ME2|LINE|L1 -146844 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 477-264 chr7 103044712 103045053 + 2 NA intron (NM_001111038, intron 2 of 18) intron (NM_001111038, intron 2 of 18) 29686 NM_145032 222235 Hs.660029 NM_145032 ENSG00000161040 FBXL13 DRC6|Fbl13 F-box and leucine rich repeat protein 13 protein-coding 373-370 chr7 1764513 1764760 + 2 NA Intergenic AluJb|SINE|Alu -22326 NR_120508 101927125 Hs.633957 NR_120508 ENSG00000236081 ELFN1-AS1 MYCLo-2 ELFN1 antisense RNA 1 ncRNA 463-300 chr9 12101860 12102167 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -591372 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 280-336 chr5 133451786 133452000 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -24187 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 567-53 chr14 54142605 54142901 + 2 NA Intergenic MIRc|SINE|MIR -185862 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 319-334 chr3 89149245 89149555 + 2 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 41779 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 478-280 chr8 27452777 27453162 + 2 NA intron (NM_173175, intron 26 of 29) intron (NM_173175, intron 26 of 29) 19599 NR_106901 102465507 NR_106901 ENSG00000273836 MIR6842 hsa-mir-6842 microRNA 6842 ncRNA 295-185 chr18 11401918 11402187 + 2 NA Intergenic Intergenic -52426 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 352-309 chr3 18870906 18871128 + 2 NA Intergenic Intergenic -277493 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 244-33 chr10 54214946 54215129 + 2 NA intron (NM_001354411, intron 9 of 34) intron (NM_001354411, intron 9 of 34) -271193 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 242-245 chr3 116982644 116982846 + 2 NA Intergenic L1ME4b|LINE|L1 61314 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 116-45 chr7 52380231 52380334 + 2 NA Intergenic L1MD3|LINE|L1 -655351 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 401-45 chr10 108398239 108398457 + 2 NA Intergenic Intergenic -329055 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 300-298 chr3 162749956 162750165 + 2 NA Intergenic L1MA3|LINE|L1 553241 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 158-59 chr2 150988645 150988735 + 2 NA Intergenic L1MA5|LINE|L1 273173 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 254-76 chr12 25289391 25289588 + 2 NA Intergenic L1ME2z|LINE|L1 -38560 NM_001369786 3845 Hs.505033 NM_004985 ENSG00000133703 KRAS C-K-RAS|CFC2|K-RAS2A|K-RAS2B|K-RAS4A|K-RAS4B|K-Ras|KI-RAS|KRAS1|KRAS2|NS|NS3|RALD|RASK2|c-Ki-ras2 KRAS proto-oncogene, GTPase protein-coding 325-423 chr5 6116972 6117201 + 2 NA Intergenic Intergenic 220206 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 289-57 chr10 59243381 59243578 + 2 NA intron (NM_001143774, intron 4 of 4) L1MC3|LINE|L1 66012 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 162-17 chr10 56938578 56938714 + 2 NA Intergenic Intergenic 365913 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 225-14 chr1 190883773 190883976 + 2 NA Intergenic L1M5|LINE|L1 258984 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 336-172 chr14 89062466 89062650 + 2 NA Intergenic LTR8A|LTR|ERV1 237907 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 239-377 chr7 53419350 53419518 + 2 NA Intergenic Intergenic 383801 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 328-296 chr2 205163011 205163204 + 2 NA intron (NM_205863, intron 11 of 21) intron (NM_205863, intron 11 of 21) -519393 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 738-34 chr19 37708663 37709123 + 2 NA intron (NM_032689, intron 3 of 4) MIR|SINE|MIR 10295 NM_001172677 84775 Hs.116622 NM_032689 ENSG00000198182 ZNF607 - zinc finger protein 607 protein-coding 479-226 chr7 24099420 24099706 + 2 NA Intergenic L1MA7|LINE|L1 -184627 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 340-131 chr13 61112551 61112858 + 2 NA Intergenic MER41B|LTR|ERV1 87176 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 243-28 chr1 229511150 229511304 + 2 NA intron (NR_110630, intron 2 of 2) AluSx|SINE|Alu 2797 NR_110630 101927478 Hs.229275 NR_110630 LOC101927478 - uncharacterized LOC101927478 ncRNA 163-37 chr12 119747789 119747919 + 2 NA intron (NM_007174, intron 22 of 46) Charlie1a|DNA|hAT-Charlie -34130 NR_031589 100302274 NR_031589 ENSG00000283768 MIR1178 MIRN1178|hsa-mir-1178 microRNA 1178 ncRNA 184-55 chr14 32563834 32564003 + 2 NA intron (NM_004274, intron 4 of 13) intron (NM_004274, intron 4 of 13) 234620 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 615-94 chr4 57197411 57197852 + 2 NA intron (NR_034081, intron 2 of 4) intron (NR_034081, intron 2 of 4) -87246 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 201-181 chr4 96240315 96240452 + 2 NA Intergenic Intergenic -70320 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 523-281 chr8 139676752 139677226 + 2 NA intron (NR_104210, intron 1 of 3) MIR|SINE|MIR 26134 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 422-218 chr4 107037555 107037769 + 2 NA Intergenic Intergenic -1349 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 332-475 chr7 31543225 31543433 + 2 NA intron (NM_001257968, intron 1 of 14) LTR19-int|LTR|ERV1 -9673 NM_194300 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 306-499 chr8 56455016 56455247 + 2 NA intron (NR_125813, intron 1 of 3) MER6|DNA|TcMar-Tigger -8490 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 341-243 chr2 59099369 59099636 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -118206 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 256-372 chr6 163202248 163202430 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) -10337 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 314-219 chr17 5087287 5087471 + 2 NA intron (NM_153018, intron 1 of 1) intron (NM_153018, intron 1 of 1) 8912 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 267-154 chr18 22867016 22867242 + 2 NA Intergenic L1M5|LINE|L1 -66199 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 300-356 chr5 32594733 32594943 + 2 NA intron (NM_006713, intron 3 of 4) MER1B|DNA|hAT-Charlie 9281 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 218-79 chr13 23571136 23571304 + 2 NA intron (NM_001204459, intron 1 of 7) intron (NM_001204459, intron 1 of 7) 808 NM_148957 55504 Hs.149168 NM_018647 ENSG00000127863 TNFRSF19 TAJ|TAJ-alpha|TRADE|TROY TNF receptor superfamily member 19 protein-coding 303-222 chr2 143242410 143242633 + 2 NA intron (NM_018460, intron 5 of 13) intron (NM_018460, intron 5 of 13) 113102 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 383-181 chr2 43549052 43549428 + 2 NA exon (NM_001345923, exon 20 of 38) exon (NM_001345923, exon 20 of 38) 46734 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 303-307 chr4 26303398 26303660 + 2 NA Intergenic Intergenic -16181 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 299-376 chr5 99927159 99927445 + 2 NA Intergenic Intergenic 393312 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 875-12 chr16 73668135 73668705 + 2 NA Intergenic L1PA7|LINE|L1 281615 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 222-4 chr1 43133140 43133294 + 2 NA Intergenic L1M5|LINE|L1 -14687 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 530-142 chr2 148487991 148488336 + 2 NA intron (NM_018328, intron 11 of 14) L2|LINE|L2 -156588 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 525-198 chr5 71950070 71950564 + 2 NA Intergenic L1PA7|LINE|L1 -157158 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 416-32 chr10 31870656 31870902 + 2 NA intron (NM_001270696, intron 3 of 17) intron (NM_001270696, intron 3 of 17) 38147 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 323-529 chr8 25673139 25673380 + 2 NA Intergenic Intergenic 214026 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 218-367 chrX 110651971 110652127 + 2 NA Intergenic L1MEf|LINE|L1 131737 NR_002718 6998 Hs.592361 NR_002718 ENSG00000225366 TDGF1P3 CR-3|CRIPTO|CRIPTO-3|CRIPTO3|TDGF1|TDGF2|TDGF3 teratocarcinoma-derived growth factor 1 pseudogene 3 pseudo 208-79 chr15 24750624 24750783 + 2 NA Intergenic Intergenic -72905 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 641-61 chr2 103096236 103096648 + 2 NA Intergenic L1MEc|LINE|L1 -112013 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 215-250 chr5 27025935 27026142 + 2 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 12548 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 277-375 chr7 46028355 46028570 + 2 NA Intergenic Intergenic -107190 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 389-256 chr4 44033332 44033559 + 2 NA Intergenic L2b|LINE|L2 16383 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 276-454 chr8 84340873 84341048 + 2 NA intron (NM_001354320, intron 2 of 9) L1MB1|LINE|L1 -74524 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 382-212 chr2 117585791 117586086 + 2 NA Intergenic L1MA7|LINE|L1 -228753 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 160-57 chr21 40522127 40522258 + 2 NA intron (NR_073202, intron 3 of 32) intron (NR_073202, intron 3 of 32) 108575 NR_046774 100874326 Hs.679746 NR_046774 ENSG00000233756 DSCAM-IT1 zag4 DSCAM intronic transcript 1 ncRNA 298-74 chr11 76568274 76568452 + 2 NA Intergenic L1MC3|LINE|L1 101575 NR_163259 2615 Hs.151641 NM_005512 ENSG00000137507 LRRC32 D11S833E|GARP leucine rich repeat containing 32 protein-coding 691-43 chr2 83989504 83990028 + 2 NA Intergenic L1MB5|LINE|L1 -300916 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 325-73 chr10 77673586 77673902 + 2 NA Intergenic MIRc|SINE|MIR -35936 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 434-140 chr2 56769444 56769824 + 2 NA Intergenic MIR|SINE|MIR -583864 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 406-157 chr2 185702613 185702972 + 2 NA Intergenic Intergenic 35927 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 449-39 chr11 16891405 16891811 + 2 NA intron (NM_001329630, intron 3 of 26) L3|LINE|CR1 34414 NR_145810 109623465 NR_145810 SNORD147 - small nucleolar RNA, C/D box 147 snoRNA 296-124 chr13 88559836 88560034 + 2 NA Intergenic L1M5|LINE|L1 19106 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 264-91 chr12 41112785 41112976 + 2 NA Intergenic LTR75B|LTR|ERVL -75440 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 291-65 chr11 8112912 8113146 + 2 NA intron (NM_001135109, intron 1 of 1) L1ME4a|LINE|L1 31667 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 695-73 chr4 146565597 146566022 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -43838 NM_032128 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 371-416 chr9 97713122 97713414 + 2 NA intron (NR_147055, intron 9 of 10) L1ME3A|LINE|L1 -15859 NR_149093 7507 Hs.654364 NM_000380 ENSG00000136936 XPA XP1|XPAC XPA, DNA damage recognition and repair factor protein-coding 389-155 chr2 5180336 5180588 + 2 NA Intergenic Intergenic 510656 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 317-52 chr10 60673891 60674131 + 2 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) 59517 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 598-128 chr7 37630624 37631045 + 2 NA Intergenic L1MA2|LINE|L1 -52932 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 317-411 chr6 55256930 55257147 + 2 NA intron (NM_001526, intron 4 of 7) L2c|LINE|L2 -70431 NM_207410 389400 Hs.526967 NM_207410 ENSG00000187871 GFRAL C6orf144|GRAL|UNQ9356|bA360D14.1 GDNF family receptor alpha like protein-coding 253-335 chr5 92743099 92743325 + 2 NA Intergenic Intergenic 828131 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 214-214 chr3 113730940 113731132 + 2 NA intron (NM_025146, intron 1 of 4) L1ME1|LINE|L1 15213 NM_025146 80218 Hs.372378 NM_025146 ENSG00000121579 NAA50 MAK3|NAT13|NAT13P|NAT5|NAT5P|SAN|hNaa50p N(alpha)-acetyltransferase 50, NatE catalytic subunit protein-coding 438-304 chrX 99815204 99815570 + 2 NA Intergenic L1MA2|LINE|L1 594886 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 721-32 chr18 78830959 78831469 + 2 NA Intergenic Intergenic -149061 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 205-233 chr5 174500255 174500427 + 2 NA intron (NR_125806, intron 2 of 5) L1M4|LINE|L1 163987 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 271-246 chr22 24375470 24375707 + 2 NA intron (NM_001254732, intron 13 of 14) L1MB5|LINE|L1 33480 NM_001254733 23384 Hs.474384 NM_015330 ENSG00000100014 SPECC1L CYTSA|GBBB2|OBLFC1|TBHS sperm antigen with calponin homology and coiled-coil domains 1 like protein-coding 488-140 chr2 79625717 79626127 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 23437 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 222-112 chr14 65931334 65931538 + 2 NA Intergenic Intergenic 460334 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 518-66 chr12 71091497 71091941 + 2 NA Intergenic L1MA2|LINE|L1 66090 NM_001369760 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 287-453 chrX 96082871 96083071 + 2 NA Intergenic L1MA4|LINE|L1 254931 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 694-19 chr10 115526009 115526553 + 2 NA intron (NM_207303, intron 25 of 28) ERV3-16A3_I-int|LTR|ERVL 432916 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 431-188 chr3 168928056 168928329 + 2 NA Intergenic Intergenic 26247 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 415-9 chr1 76620137 76620460 + 2 NA intron (NR_146056, intron 4 of 5) intron (NR_146056, intron 4 of 5) 158969 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 407-16 chr1 208635558 208635930 + 2 NA Intergenic Intergenic -92944 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 529-244 chrX 93130376 93130868 + 2 NA Intergenic L1MB7|LINE|L1 -305719 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 357-254 chr22 27380047 27380389 + 2 NA Intergenic MIRb|SINE|MIR 69567 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 907-12 chr17 34780240 34780910 + 2 NA Intergenic Intergenic 180885 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 369-30 chr10 21213954 21214235 + 2 NA Intergenic Intergenic 39792 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 376-111 chr14 83818262 83818500 + 2 NA Intergenic Intergenic 1175749 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 296-104 chr12 43485256 43485437 + 2 NA intron (NM_025003, intron 7 of 38) L1PB3|LINE|L1 66857 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 136-86 chr8 77456485 77456613 + 2 NA intron (NR_125830, intron 1 of 2) L2c|LINE|L2 5852 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 354-466 chr8 87439983 87440199 + 2 NA Intergenic L1MEg|LINE|L1 433924 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 289-34 chr1 210763119 210763333 + 2 NA intron (NM_002238, intron 10 of 10) L1PA17|LINE|L1 370148 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 295-17 chr1 147822213 147822381 + 2 NA Intergenic Intergenic -48935 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 433-290 chr8 130916208 130916587 + 2 NA intron (NM_001115, intron 5 of 17) intron (NM_001115, intron 5 of 17) 124512 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 230-57 chr11 35959782 35959998 + 2 NA intron (NM_001304264, intron 1 of 5) AluSz|SINE|Alu 15828 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 310-219 chr2 6053144 6053400 + 2 NA Intergenic Intergenic 71294 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 198-211 chr6 39489557 39489726 + 2 NA intron (NM_001289021, intron 12 of 21) intron (NM_001289021, intron 12 of 21) -58251 NM_001289024 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 302-3 chr1 34880243 34880539 + 2 NA intron (NM_001080418, intron 8 of 11) L1MEd|LINE|L1 -20642 NM_001320261 113444 Hs.27160 NM_138428 ENSG00000163866 SMIM12 C1orf212 small integral membrane protein 12 protein-coding 350-24 chr1 176749993 176750245 + 2 NA intron (NM_020318, intron 14 of 22) (TCTTTT)n|Simple_repeat|Simple_repeat 279326 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 241-146 chr17 62188005 62188173 + 2 NA Intergenic MER53|DNA|hAT 87566 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 233-217 chr22 35065009 35065226 + 2 NA Intergenic L1PA8|LINE|L1 -1041 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 356-138 chr14 38423099 38423320 + 2 NA Intergenic L1MA3|LINE|L1 -167116 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 187-79 chr2 65343287 65343443 + 2 NA intron (NM_001128210, intron 2 of 5) intron (NM_001128210, intron 2 of 5) 23413 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 374-301 chr5 22738684 22739028 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 114488 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 660-27 chr14 46430361 46430841 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -40758 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 321-391 chr3 153870118 153870303 + 2 NA Intergenic L1MA2|LINE|L1 -107684 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 574-164 chr7 41128130 41128522 + 2 NA intron (NR_110832, intron 4 of 5) LTR33A_|LTR|ERVL 26722 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 282-303 chr3 97189269 97189453 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) -250246 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 309-577 chr9 80961531 80961694 + 2 NA Intergenic MER61A|LTR|ERV1 727923 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 276-128 chr13 78185111 78185292 + 2 NA intron (NR_047001, intron 1 of 5) intron (NR_047001, intron 1 of 5) 130346 NR_047001 100874222 Hs.493062 NR_047001 ENSG00000234377 OBI1-AS1 POU4F1-AS1|RNF219-AS1 OBI1 antisense RNA 1 ncRNA 761-5 chr1 157676295 157676891 + 2 NA non-coding (NR_135215, exon 16 of 16) non-coding (NR_135215, exon 16 of 16) 24176 NR_135215 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 230-314 chr5 136919044 136919191 + 2 NA Intergenic L1ME4b|LINE|L1 -209080 NR_134246 105379192 Hs.124611 NR_134246 LOC105379192 - uncharacterized LOC105379192 ncRNA 560-22 chr10 75289042 75289436 + 2 NA intron (NR_120651, intron 1 of 3) intron (NR_120651, intron 1 of 3) -7144 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 336-265 chr2 57931007 57931225 + 2 NA intron (NM_001288838, intron 1 of 15) L1MA9|LINE|L1 23465 NM_001288837 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 371-315 chr5 86004925 86005173 + 2 NA Intergenic MER113A|DNA|hAT-Charlie -277395 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 293-257 chr3 49549712 49549908 + 2 NA non-coding (NR_038866, exon 3 of 3) non-coding (NR_038866, exon 3 of 3) 4556 NR_038866 100132677 Hs.435651 NR_038866 ENSG00000226913 BSN-DT BSN-AS2 BSN divergent transcript ncRNA 481-252 chr5 97990609 97990946 + 2 NA Intergenic Intergenic 150019 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 269-324 chr5 144553700 144553873 + 2 NA Intergenic Intergenic 348395 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 249-201 chr2 82381446 82381625 + 2 NA Intergenic Intergenic -475268 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 346-43 chr10 31265480 31265672 + 2 NA Intergenic Intergenic -52841 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 338-461 chr6 13211399 13211728 + 2 NA intron (NM_001322308, intron 7 of 13) intron (NM_001322308, intron 7 of 13) 71879 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 610-73 chr18 1850401 1850819 + 2 NA Intergenic Intergenic -490981 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 211-108 chr17 9286134 9286283 + 2 NA intron (NM_004853, intron 7 of 7) intron (NM_004853, intron 7 of 7) -107090 NR_110828 101928266 Hs.639880 NR_110828 ENSG00000262966 LOC101928266 - uncharacterized LOC101928266 ncRNA 466-193 chr5 6240608 6240987 + 2 NA Intergenic L1M5|LINE|L1 96495 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 294-341 chr4 85535056 85535229 + 2 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 59992 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 199-55 chr14 45308006 45308199 + 2 NA Intergenic Intergenic -54900 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 215-8 chr1 107005286 107005477 + 2 NA Intergenic L1MEd|LINE|L1 -51293 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 375-102 chr12 46493454 46493702 + 2 NA intron (NR_125380, intron 3 of 3) intron (NR_125380, intron 3 of 3) 109471 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 220-129 chr17 48281608 48281782 + 2 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -12652 NR_131240 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 279-336 chr5 106469438 106469646 + 2 NA Intergenic L1MA4|LINE|L1 541472 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 297-72 chr11 42581669 42581954 + 2 NA Intergenic L2c|LINE|L2 -328121 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 225-176 chr20 10494594 10494767 + 2 NA intron (NM_001009608, intron 2 of 7) L1MC|LINE|L1 59375 NM_001009608 128710 Hs.668782 NM_001009608 ENSG00000149346 SLX4IP C20orf94|bA204H22.1|bA254M13.1|dJ1099D15.3 SLX4 interacting protein protein-coding 256-325 chr5 96232337 96232505 + 2 NA intron (NR_130776, intron 1 of 4) L1M5|LINE|L1 153283 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 160-49 chr20 34016549 34016667 + 2 NA intron (NM_007367, intron 1 of 8) intron (NM_007367, intron 1 of 8) -22241 NR_109885 101926888 Hs.405849 NR_109885 ENSG00000285230 RALY-AS1 - RALY antisense RNA 1 ncRNA 243-83 chr11 115245021 115245174 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -88480 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 330-171 chr15 68357590 68357787 + 2 NA intron (NM_001004439, intron 6 of 29) intron (NM_001004439, intron 6 of 29) 74475 NM_001004439 22801 Hs.436416 NM_012211 ENSG00000137809 ITGA11 HsT18964 integrin subunit alpha 11 protein-coding 309-459 chr5 137585221 137585515 + 2 NA Intergenic MIRb|SINE|MIR 62281 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 275-252 chr3 137859900 137860091 + 2 NA Intergenic MamGyp-int|LTR|Gypsy 88084 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 339-218 chr17 74161308 74161541 + 2 NA Intergenic Intergenic -42254 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 443-170 chr2 233944593 233944887 + 2 NA intron (NM_024080, intron 6 of 25) intron (NM_024080, intron 6 of 25) 27367 NM_024080 79054 Hs.366053 NM_024080 ENSG00000144481 TRPM8 LTRPC6|LTrpC-6|TRPP8|trp-p8 transient receptor potential cation channel subfamily M member 8 protein-coding 312-381 chr4 96595126 96595392 + 2 NA intron (NR_147149, intron 3 of 3) MLT1D|LTR|ERVL-MaLR 284556 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 231-59 chr11 102137035 102137227 + 2 NA intron (NM_001130145, intron 2 of 8) intron (NM_001130145, intron 2 of 8) 24683 NM_001195045 10413 Hs.503692 NM_006106 ENSG00000137693 YAP1 COB1|YAP|YAP2|YAP65|YKI Yes associated protein 1 protein-coding 481-283 chr7 79216557 79217030 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 207805 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 268-17 chr1 168525220 168525460 + 2 NA Intergenic L1ME1|LINE|L1 18657 NM_003175 6846 Hs.458346 NM_003175 ENSG00000143185 XCL2 SCM-1b|SCM1B|SCYC2 X-C motif chemokine ligand 2 protein-coding 258-155 chr16 76895357 76895568 + 2 NA Intergenic L1M4b|LINE|L1 26526 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 357-147 chr16 61986615 61986903 + 2 NA intron (NM_001796, intron 2 of 11) intron (NM_001796, intron 2 of 11) 49679 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 207-238 chr5 26923342 26923517 + 2 NA intron (NM_016279, intron 2 of 11) L1M1|LINE|L1 115157 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 357-388 chr6 65018671 65018945 + 2 NA intron (NM_001292009, intron 13 of 43) intron (NM_001292009, intron 13 of 43) -282610 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 340-72 chr11 30684485 30684761 + 2 NA Intergenic ORSL|DNA|hAT-Tip100 -98270 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 536-13 chr1 112036745 112037111 + 2 NA Intergenic Intergenic 46392 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 389-329 chr6 155943406 155943748 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -3220 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 814-60 chr8 77818078 77818730 + 2 NA Intergenic MLT2B4|LTR|ERVL 367707 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 309-82 chr11 54758442 54758643 + 2 NA Intergenic ALR/Alpha|Satellite|centr 51710 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 209-173 chr20 36281187 36281359 + 2 NA Intergenic Intergenic -25066 NM_014902 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 238-280 chr4 167503844 167504044 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -269354 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 560-126 chr4 63986833 63987258 + 2 NA Intergenic L1PB3|LINE|L1 422405 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 263-311 chr5 6834350 6834534 + 2 NA Intergenic Intergenic -6521 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 182-149 chr6 66471421 66471552 + 2 NA Intergenic Intergenic 683607 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 251-416 chr9 84238593 84238802 + 2 NA Intergenic MER50|LTR|ERV1 102061 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 329-152 chr14 39841975 39842139 + 2 NA Intergenic L2|LINE|L2 -409557 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 241-89 chr12 91572218 91572351 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy -389467 NM_001920 1634 Hs.156316 NM_001920 ENSG00000011465 DCN CSCD|DSPG2|PG40|PGII|PGS2|SLRR1B decorin protein-coding 283-73 chr11 19144666 19144857 + 2 NA intron (NM_019028, intron 2 of 16) intron (NM_019028, intron 2 of 16) 27593 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 269-343 chr6 56933166 56933430 + 2 NA intron (NM_001144769, intron 2 of 96) LTR39|LTR|ERV1 21532 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 316-411 chr4 143006714 143006891 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -160267 NM_001331040 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 326-12 chr1 66285715 66285916 + 2 NA intron (NM_001037340, intron 5 of 14) intron (NM_001037340, intron 5 of 14) -46293 NM_001037339 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 333-400 chr4 81461008 81461328 + 2 NA intron (NM_152545, intron 1 of 13) intron (NM_152545, intron 1 of 13) 10739 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 446-320 chr8 138434099 138434388 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 63018 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 265-310 chr5 79563043 79563203 + 2 NA Intergenic Intergenic -48989 NM_004272 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 234-154 chr2 971681 971849 + 2 NA intron (NM_018968, intron 1 of 16) L1M2|LINE|L1 -20373 NR_136151 101060391 Hs.120377 NR_136151 SNTG2-AS1 - SNTG2 antisense RNA 1 ncRNA 590-69 chr18 74429109 74429684 + 2 NA Intergenic Intergenic 19948 NR_131977 101927606 Hs.623809 NR_131977 ENSG00000259779 LINC01922 - long intergenic non-protein coding RNA 1922 ncRNA 190-52 chr14 33127629 33127755 + 2 NA intron (NM_001164749, intron 2 of 11) intron (NM_001164749, intron 2 of 11) 188813 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 252-178 chr2 16294292 16294523 + 2 NA Intergenic Intergenic 243980 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 308-482 chr8 26150468 26150762 + 2 NA Intergenic L1MCa|LINE|L1 -105202 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 275-276 chr4 137940897 137941130 + 2 NA Intergenic L1M1|LINE|L1 -148001 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 230-365 chr8 16201408 16201580 + 2 NA Intergenic Intergenic -8703 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 283-379 chr5 125264343 125264508 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) 227594 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 322-199 chr17 43337198 43337431 + 2 NA Intergenic HERVK13-int|LTR|ERVK -37083 NR_002716 6066 NR_002716 ENSG00000274585 RNU2-1 RNU2|U2 RNA, U2 small nuclear 1 snRNA 501-271 chr8 135328088 135328443 + 2 NA Intergenic Intergenic 94134 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 323-193 chr18 5103561 5103752 + 2 NA Intergenic MER34A1|LTR|ERV1 22474 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 223-202 chr3 1569288 1569484 + 2 NA Intergenic L1ME1|LINE|L1 476362 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 232-366 chr7 121725894 121726037 + 2 NA Intergenic L1M7|LINE|L1 -147196 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 184-88 chr2 56829683 56829839 + 2 NA Intergenic AluYb8|SINE|Alu -643991 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 352-534 chr8 92493817 92494100 + 2 NA Intergenic L1ME4b|LINE|L1 161536 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 332-116 chr12 20955385 20955551 + 2 NA intron (NM_001371097, intron 13 of 15) L1PA7|LINE|L1 -60228 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 354-144 chr14 72565020 72565328 + 2 NA non-coding (NR_135235, exon 19 of 19) non-coding (NR_135235, exon 19 of 19) 48354 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 501-289 chrX 93299883 93300318 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 373478 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 1046-17 chr5 64238414 64239045 + 2 NA intron (NM_001113561, intron 5 of 7) L1MB1|LINE|L1 72886 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 505-277 chr6 160650581 160650957 + 2 NA intron (NM_005577, intron 1 of 38) L1MCc|LINE|L1 13490 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 329-14 chr1 95705627 95705809 + 2 NA Intergenic L1M2|LINE|L1 195602 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 198-11 chr1 152814167 152814358 + 2 NA Intergenic L1M5|LINE|L1 2291 NM_178349 353132 Hs.375103 NM_178349 ENSG00000196734 LCE1B LEP2|SPRL2A late cornified envelope 1B protein-coding 113-9 chr11 106444089 106444191 + 2 NA Intergenic Intergenic 192733 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 478-299 chr8 129531698 129531997 + 2 NA intron (NR_130917, intron 1 of 3) MLT1E1|LTR|ERVL-MaLR 43171 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 210-36 chr10 81958293 81958438 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 80678 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 263-155 chr17 61098692 61098882 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 268917 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 568-119 chr2 207361615 207362032 + 2 NA Intergenic L1MB8|LINE|L1 -92399 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 374-339 chr6 69170615 69170854 + 2 NA intron (NM_001704, intron 17 of 31) intron (NM_001704, intron 17 of 31) 535452 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 405-101 chr16 17238632 17238912 + 2 NA intron (NM_022166, intron 3 of 11) L2|LINE|L2 104268 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 701-75 chr5 98210672 98211138 + 2 NA Intergenic Intergenic -49666 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 215-178 chr21 19847304 19847461 + 2 NA Intergenic Intergenic 52373 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 317-114 chr12 99296651 99296833 + 2 NA intron (NM_152788, intron 12 of 25) L2a|LINE|L2 -141652 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 278-159 chr17 66743369 66743621 + 2 NA intron (NM_002737, intron 13 of 16) intron (NM_002737, intron 13 of 16) -43577 NR_030364 693219 NR_030364 ENSG00000207943 MIR634 MIRN634|hsa-mir-634 microRNA 634 ncRNA 345-563 chr9 133501793 133501977 + 2 NA Intergenic L1MEd|LINE|L1 -22786 NM_001145099 11182 Hs.244378 NM_017585 ENSG00000160326 SLC2A6 GLUT6|GLUT9|HSA011372 solute carrier family 2 member 6 protein-coding 247-339 chr5 129232108 129232279 + 2 NA Intergenic Intergenic 134505 NR_039776 100616175 NR_039776 ENSG00000264563 MIR4633 - microRNA 4633 ncRNA 541-150 chr22 33146840 33147227 + 2 NA Intergenic L1ME3|LINE|L1 38504 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 356-326 chr3 79302552 79302895 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -109004 NR_110133 101927374 Hs.570644 NR_110133 LOC101927374 - uncharacterized LOC101927374 ncRNA 196-181 chr4 54713338 54713497 + 2 NA intron (NM_000222, intron 7 of 20) intron (NM_000222, intron 7 of 20) 55489 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 336-254 chr2 10736589 10736868 + 2 NA intron (NM_001039362, intron 3 of 13) L1M5|LINE|L1 15098 NM_001039362 245973 Hs.580464 NM_144583 ENSG00000143882 ATP6V1C2 ATP6C2|VMA5 ATPase H+ transporting V1 subunit C2 protein-coding 368-226 chr2 31037806 31038071 + 2 NA intron (NM_024572, intron 1 of 14) L1M4|LINE|L1 91702 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 241-248 chr3 140784851 140784990 + 2 NA Intergenic L1MDa|LINE|L1 106856 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 196-85 chr15 89957621 89957736 + 2 NA Intergenic L1M5|LINE|L1 -43646 NM_198526 374655 Hs.459311 NM_198526 ENSG00000140548 ZNF710 - zinc finger protein 710 protein-coding 273-264 chr20 55840676 55840883 + 2 NA Intergenic L1MB1|LINE|L1 164740 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 355-186 chr16 76106356 76106636 + 2 NA Intergenic Intergenic -170905 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 117-12 chr15 23871322 23871398 + 2 NA Intergenic L1ME3G|LINE|L1 -103787 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 589-13 chr10 82376596 82376973 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -143864 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 587-144 chr6 68037741 68038209 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -17376 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 183-123 chr5 160834788 160834947 + 2 NA intron (NM_001366652, intron 1 of 24) intron (NM_001366652, intron 1 of 24) 17344 NM_025153 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 352-200 chr18 75995275 75995465 + 2 NA Intergenic LTR33C|LTR|ERVL -127628 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 293-199 chr2 117597786 117597969 + 2 NA Intergenic Intergenic -216814 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 408-119 chr15 80677304 80677646 + 2 NA Intergenic MER57B1|LTR|ERV1 -17835 NM_021214 58489 Hs.459072 NM_021214 ENSG00000136379 ABHD17C FAM108C1 abhydrolase domain containing 17C protein-coding 408-161 chr2 116573869 116574104 + 2 NA Intergenic L1MA1|LINE|L1 1230171 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 375-321 chr5 60331035 60331341 + 2 NA intron (NM_001364599, intron 1 of 16) MIRb|SINE|MIR 41475 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 125-6 chr10 69128642 69128719 + 2 NA intron (NM_001035260, intron 1 of 7) intron (NM_001035260, intron 1 of 7) 4502 NM_001318945 9559 Hs.499925 NM_004896 ENSG00000122958 VPS26A HB58|Hbeta58|PEP8A|VPS26 VPS26, retromer complex component A protein-coding 464-159 chr3 34291816 34292242 + 2 NA Intergenic Intergenic 493399 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 311-296 chr20 17090727 17090906 + 2 NA Intergenic Intergenic -135291 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 393-313 chr6 125317856 125318110 + 2 NA Intergenic Intergenic -16016 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 365-421 chr9 15106674 15106989 + 2 NA Intergenic AluSg|SINE|Alu 113504 NR_003920 389705 Hs.431257 NR_003920 LOC389705 - histone PARylation factor 1 pseudogene pseudo 359-431 chr6 113194779 113194992 + 2 NA Intergenic L1MC3|LINE|L1 238562 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 390-261 chr4 32574652 32574868 + 2 NA Intergenic L1M2|LINE|L1 223722 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 346-395 chr5 98530393 98530685 + 2 NA Intergenic Intergenic -238093 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 298-326 chr4 60001369 60001658 + 2 NA Intergenic Intergenic -921106 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 216-109 chr15 27716545 27716715 + 2 NA Intergenic L1MD|LINE|L1 382685 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 464-20 chr10 58708649 58709089 + 2 NA intron (NM_001080512, intron 3 of 20) LTR9D|LTR|ERV1 -6146 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 541-5 chr1 62604401 62604900 + 2 NA exon (NM_014495, exon 7 of 7) exon (NM_014495, exon 7 of 7) 7130 NM_014495 27329 Hs.209153 NM_014495 ENSG00000132855 ANGPTL3 ANG-5|ANGPT5|ANL3|FHBL2 angiopoietin like 3 protein-coding 301-499 chrX 152039919 152040162 + 2 NA Intergenic MER4-int|LTR|ERV1 -65364 NM_004961 2564 Hs.22785 NM_004961 ENSG00000102287 GABRE - gamma-aminobutyric acid type A receptor epsilon subunit protein-coding 239-426 chr8 136538811 136538951 + 2 NA intron (NR_147196, intron 2 of 5) Charlie1a|DNA|hAT-Charlie 8083 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 274-355 chr7 70047146 70047309 + 2 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 448752 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 300-58 chr10 118095618 118095863 + 2 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) -48799 NM_014904 22841 Hs.173656 NM_014904 ENSG00000107560 RAB11FIP2 Rab11-FIP2|nRip11 RAB11 family interacting protein 2 protein-coding 280-56 chr10 76214662 76214871 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 432005 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 354-167 chr16 87004294 87004590 + 2 NA Intergenic L1MB5|LINE|L1 -53342 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 121-11 chr14 79073349 79073448 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -126584 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 442-83 chr14 72344135 72344532 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -172487 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 141-30 chr16 80241385 80241475 + 2 NA intron (NR_120307, intron 2 of 5) L1MEf|LINE|L1 -299304 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 364-328 chr5 11983935 11984226 + 2 NA Intergenic Intergenic -79634 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 404-264 chr5 124831444 124831734 + 2 NA Intergenic L2b|LINE|L2 -86477 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 321-296 chr2 122455336 122455647 + 2 NA Intergenic L1PA17|LINE|L1 617990 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 371-117 chr15 37852153 37852516 + 2 NA Intergenic Intergenic -82273 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 267-407 chr7 126247473 126247665 + 2 NA Intergenic L1MA4A|LINE|L1 810615 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 345-533 chr8 120991636 120991911 + 2 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -179727 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 349-360 chr4 25594802 25595120 + 2 NA Intergenic AluSz|SINE|Alu -25615 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 524-35 chr10 112030104 112030533 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 153447 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 187-154 chr7 22172736 22172887 + 2 NA intron (NM_001367603, intron 1 of 5) intron (NM_001367603, intron 1 of 5) 20934 NM_001367601 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 518-109 chr17 61704391 61704792 + 2 NA intron (NM_032043, intron 17 of 19) L1MD2|LINE|L1 -113372 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 1042-9 chr2 51336282 51337112 + 2 NA intron (NR_135237, intron 3 of 10) intron (NR_135237, intron 3 of 10) 304096 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 526-49 chr11 87856564 87856893 + 2 NA Intergenic L1PA8|LINE|L1 -137317 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 236-273 chr5 6119285 6119462 + 2 NA Intergenic Intergenic 217919 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 294-414 chr6 120592422 120592609 + 2 NA Intergenic L1MD|LINE|L1 577336 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 244-304 chr5 87986215 87986415 + 2 NA Intergenic Intergenic 282530 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 269-303 chr5 23003289 23003464 + 2 NA Intergenic Intergenic -150032 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 247-410 chr8 103373008 103373185 + 2 NA intron (NM_001256099, intron 1 of 3) intron (NM_001256099, intron 1 of 3) 589 NM_001256099 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 388-238 chr3 156873096 156873355 + 2 NA intron (NM_001004316, intron 3 of 12) L1MA4A|LINE|L1 46872 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 407-51 chr11 81040637 81040951 + 2 NA Intergenic Intergenic -277991 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 138-96 chr8 135508259 135508391 + 2 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 50869 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 280-67 chr10 130698293 130698517 + 2 NA Intergenic Intergenic 264263 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 667-117 chr8 115883831 115884320 + 2 NA Intergenic Intergenic -215100 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 305-538 chr8 88399908 88400107 + 2 NA Intergenic L1ME2|LINE|L1 -72524 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 351-171 chr17 40600311 40600659 + 2 NA Intergenic L3b|LINE|CR1 -35013 NM_001838 1236 Hs.370036 NM_001838 ENSG00000126353 CCR7 BLR2|CC-CKR-7|CCR-7|CD197|CDw197|CMKBR7|EBI1 C-C motif chemokine receptor 7 protein-coding 157-109 chr6 57168886 57169038 + 2 NA 3' UTR (NM_001031623, exon 15 of 15) 3' UTR (NM_001031623, exon 15 of 15) 3251 NR_110742 101927211 Hs.705718 NR_110742 ZNF451-AS1 - ZNF451 regulatory antisense RNA 1 ncRNA 332-414 chr5 54614150 54614366 + 2 NA Intergenic Intergenic 89066 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 352-153 chr14 76680538 76680762 + 2 NA Intergenic L2c|LINE|L2 -80818 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 154-106 chr8 120227200 120227293 + 2 NA exon (NM_021110, exon 17 of 48) exon (NM_021110, exon 17 of 48) 102144 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 228-148 chr19 53232901 53233107 + 2 NA Intergenic L1MB7|LINE|L1 20056 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 253-201 chr2 166426828 166427017 + 2 NA intron (NR_045628, intron 18 of 25) intron (NR_045628, intron 18 of 25) -50935 NM_002977 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 228-263 chr5 33008382 33008571 + 2 NA Intergenic Intergenic 61033 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 699-28 chr14 76632738 76633185 + 2 NA Intergenic L1ME1|LINE|L1 -128507 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 256-437 chr8 132090293 132090499 + 2 NA intron (NM_001145095, intron 6 of 15) intron (NM_001145095, intron 6 of 15) 14869 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 296-398 chr6 54134780 54135067 + 2 NA intron (NM_138569, intron 3 of 12) intron (NM_138569, intron 3 of 12) 23480 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 309-47 chr10 41913541 41913797 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 454376 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 329-455 chr5 43933731 43933953 + 2 NA Intergenic L1ME3A|LINE|L1 -330612 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 691-19 chr12 38815742 38816239 + 2 NA intron (NM_153634, intron 6 of 19) intron (NM_153634, intron 6 of 19) 89601 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 311-281 chr2 211908314 211908536 + 2 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 517935 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 341-503 chr7 98849555 98849759 + 2 NA intron (NM_152913, intron 6 of 7) intron (NM_152913, intron 6 of 7) 20357 NM_152913 222865 Hs.270753 NM_152913 ENSG00000166448 TMEM130 - transmembrane protein 130 protein-coding 603-70 chr18 13930022 13930568 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -14588 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 458-95 chr16 64940533 64940844 + 2 NA Intergenic Intergenic 181375 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 211-181 chr3 37926514 37926721 + 2 NA intron (NM_001008392, intron 1 of 7) intron (NM_001008392, intron 1 of 7) -42787 NR_029499 407015 NR_029499 ENSG00000199075 MIR26A1 MIR26A|MIRN26A1|mir-26a-1 microRNA 26a-1 ncRNA 276-406 chr6 77417734 77417942 + 2 NA Intergenic L1MDa|LINE|L1 46184 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 200-75 chr14 47103231 47103382 + 2 NA intron (NM_001113498, intron 5 of 16) intron (NM_001113498, intron 5 of 16) 239940 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 344-302 chr3 12111680 12111866 + 2 NA intron (NM_133625, intron 1 of 12) intron (NM_133625, intron 1 of 12) 47139 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 348-28 chr1 165082299 165082522 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 273831 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 169-68 chr21 22642552 22642659 + 2 NA Intergenic Intergenic -436679 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 466-94 chr16 54151733 54152043 + 2 NA Intergenic AluJo|SINE|Alu 112495 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 592-100 chr21 26383648 26384185 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -9719 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 620-34 chr14 45449460 45449846 + 2 NA Intergenic L1MA4A|LINE|L1 -196451 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 229-327 chr5 162092519 162092731 + 2 NA intron (NM_198904, intron 1 of 9) (AT)n|Simple_repeat|Simple_repeat 24983 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 876-27 chr4 38330022 38330578 + 2 NA Intergenic Intergenic -36614 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 340-157 chr14 81749245 81749516 + 2 NA Intergenic Intergenic -6242 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 278-454 chr9 83634186 83634389 + 2 NA intron (NM_001001551, intron 3 of 4) intron (NM_001001551, intron 3 of 4) 11144 NR_046422 414328 Hs.530261 NM_001001551 ENSG00000148057 IDNK C9orf103|bA522I20.2|hGntK IDNK gluconokinase protein-coding 297-127 chr14 42985211 42985398 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 1378448 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 306-396 chr5 66369623 66369879 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 141853 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 600-84 chr3 90717425 90717932 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1610057 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 246-321 chr5 40050284 40050478 + 2 NA Intergenic L2|LINE|L2 -1910 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 288-74 chr11 112387094 112387316 + 2 NA Intergenic L1ME1|LINE|L1 -95027 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 426-24 chr10 36262198 36262561 + 2 NA Intergenic MIRb|SINE|MIR 484077 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 543-137 chr2 195259265 195259631 + 2 NA Intergenic Intergenic -397510 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 347-347 chr4 63331252 63331587 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1078031 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 251-85 chr14 23872452 23872634 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -81227 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 347-270 chr20 43698863 43699073 + 2 NA intron (NM_001278610, intron 5 of 12) AluJo|SINE|Alu 28034 NM_176791 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 223-369 chr9 103062189 103062372 + 2 NA Intergenic L1MC3|LINE|L1 66947 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 675-30 chr14 78671929 78672341 + 2 NA intron (NR_073547, intron 6 of 20) intron (NR_073547, intron 6 of 20) 268416 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 483-166 chr3 63107980 63108422 + 2 NA intron (NR_027104, intron 2 of 6) L1ME3A|LINE|L1 5513 NR_027104 285401 Hs.211125 NR_027104 ENSG00000244342 LINC00698 - long intergenic non-protein coding RNA 698 ncRNA 452-91 chr15 80486535 80486932 + 2 NA intron (NM_014862, intron 5 of 18) intron (NM_014862, intron 5 of 18) 76211 NR_120363 101929586 Hs.569426 NR_120363 ENSG00000259175 LOC101929586 - uncharacterized LOC101929586 ncRNA 716-70 chr5 164546517 164546944 + 2 NA Intergenic LTR83|LTR|ERVL 76451 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 241-96 chr13 42851616 42851830 + 2 NA intron (NR_126388, intron 2 of 2) intron (NR_126388, intron 2 of 2) 21021 NR_126389 104355147 Hs.633967 NR_126388 LINC00428 - long intergenic non-protein coding RNA 428 ncRNA 356-139 chr14 42601805 42602052 + 2 NA Intergenic Intergenic 995072 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 456-300 chr7 48315621 48315967 + 2 NA intron (NM_152701, intron 26 of 61) intron (NM_152701, intron 26 of 61) 144336 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 509-276 chrX 138413465 138413934 + 2 NA Intergenic L1MA3|LINE|L1 254094 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 791-71 chr8 133548137 133548565 + 2 NA intron (NM_003033, intron 1 of 8) L2b|LINE|L2 23536 NM_173344 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 537-131 chr2 166977838 166978322 + 2 NA intron (NM_152381, intron 2 of 10) L1M5|LINE|L1 89593 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 357-120 chr14 78561863 78562140 + 2 NA intron (NM_004796, intron 1 of 16) MLT1G3|LTR|ERVL-MaLR 158282 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 471-238 chr6 138369539 138369937 + 2 NA Intergenic L1M5|LINE|L1 -7905 NM_001368163 110806279 NM_001368163 ENSG00000262543 SMIM28 - small integral membrane protein 28 protein-coding 188-52 chr14 53150637 53150761 + 2 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 2624 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 612-107 chr4 167507119 167507551 + 2 NA Intergenic L1PA13|LINE|L1 -272745 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 582-11 chr10 111789764 111790241 + 2 NA Intergenic L1MD2|LINE|L1 393763 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 767-52 chr7 103854679 103855183 + 2 NA intron (NM_005045, intron 2 of 64) intron (NM_005045, intron 2 of 64) 134585 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 333-587 chr8 121143550 121143853 + 2 NA Intergenic LTR8A|LTR|ERV1 -331655 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 377-386 chr8 10986403 10986704 + 2 NA intron (NM_173683, intron 1 of 2) intron (NM_173683, intron 1 of 2) 48749 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 130-74 chr6 64244488 64244561 + 2 NA intron (NM_001292009, intron 30 of 43) L1MEd|LINE|L1 437688 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 242-363 chr7 24046976 24047115 + 2 NA Intergenic Intergenic -237145 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 683-17 chr12 39780324 39780946 + 2 NA intron (NM_052885, intron 7 of 9) intron (NM_052885, intron 7 of 9) 154452 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 198-243 chr8 79622522 79622680 + 2 NA intron (NM_007029, intron 1 of 4) intron (NM_007029, intron 1 of 4) 11484 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 303-162 chr16 64444479 64444700 + 2 NA Intergenic MIRb|SINE|MIR 677474 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 607-15 chr1 229786425 229786908 + 2 NA Intergenic Intergenic 99152 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 430-347 chrX 92250899 92251325 + 2 NA intron (NM_032969, intron 3 of 5) MIR|SINE|MIR 415651 NM_032969 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 162-140 chr9 117428348 117428447 + 2 NA Intergenic MIRb|SINE|MIR -13340 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 358-87 chr12 12462250 12462523 + 2 NA intron (NM_001300742, intron 3 of 3).2 L2a|LINE|L2 100477 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 355-325 chr3 82813111 82813340 + 2 NA Intergenic L1P4|LINE|L1 827083 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 329-506 chr6 123669944 123670207 + 2 NA Intergenic Intergenic -32982 NM_001256022 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 351-188 chr18 62479910 62480154 + 2 NA Intergenic L1PREC2|LINE|L1 -42993 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 462-124 chr19 32763039 32763404 + 2 NA intron (NM_001366102, intron 8 of 32) L1MC4|LINE|L1 43454 NM_001110822 91646 Hs.646351 NM_001015890 ENSG00000173809 TDRD12 ECAT8 tudor domain containing 12 protein-coding 325-131 chr12 79315733 79316003 + 2 NA intron (NM_001291901, intron 7 of 9) intron (NM_001291901, intron 7 of 9) -103389 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 305-12 chr1 70734193 70734460 + 2 NA intron (NR_125938, intron 5 of 6) L1MD1|LINE|L1 27873 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 289-297 chr3 36978782 36979038 + 2 NA Intergenic L1MA4|LINE|L1 14221 NM_014805 9852 Hs.28020 NM_014805 ENSG00000178567 EPM2AIP1 - EPM2A interacting protein 1 protein-coding 119-49 chr5 92507664 92507746 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 1063638 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 445-62 chr14 23803613 23804039 + 2 NA Intergenic Intergenic -149944 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 350-364 chr4 132530021 132530275 + 2 NA Intergenic Intergenic -60941 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 271-293 chr4 18668931 18669167 + 2 NA Intergenic L2c|LINE|L2 -647174 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 269-128 chr15 24884961 24885150 + 2 NA intron (NM_001349461, intron 1 of 12) MER41D|LTR|ERV1 28543 NM_001349462 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 447-168 chr3 54707693 54707926 + 2 NA intron (NM_018398, intron 11 of 37) intron (NM_018398, intron 11 of 37) -67952 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 121-12 chr15 77326286 77326377 + 2 NA intron (NM_024776, intron 1 of 7) intron (NM_024776, intron 1 of 7) 93773 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 305-159 chr14 85988876 85989047 + 2 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 54283 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 315-165 chr16 6516109 6516314 + 2 NA intron (NM_018723, intron 2 of 15) AluSx|SINE|Alu -257598 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 556-40 chr11 91531983 91532425 + 2 NA Intergenic MIRb|SINE|MIR -663002 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 243-230 chr2 123329013 123329217 + 2 NA Intergenic L1MB1|LINE|L1 -255634 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 338-254 chr2 53424711 53424928 + 2 NA Intergenic L1PA15|LINE|L1 -342964 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 289-416 chr6 67763977 67764213 + 2 NA Intergenic L1MA7|LINE|L1 -291256 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 319-39 chr1 244201081 244201289 + 2 NA Intergenic Intergenic 147980 NM_006352 10472 Hs.69997 NM_006352 ENSG00000179456 ZBTB18 C2H2-171|MRD22|RP58|TAZ-1|ZNF238 zinc finger and BTB domain containing 18 protein-coding 303-208 chr2 59494010 59494257 + 2 NA Intergenic L1PA16|LINE|L1 276425 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 188-112 chr2 202730072 202730188 + 2 NA intron (NM_173511, intron 4 of 7) MIR|SINE|MIR 95161 NM_173511 150864 Hs.471130 NM_173511 ENSG00000138439 FAM117B ALS2CR13 family with sequence similarity 117 member B protein-coding 336-207 chr17 20157778 20157997 + 2 NA intron (NM_001033554, intron 1 of 5) FLAM_A|SINE|Alu 1815 NM_001243438 92521 Hs.431045 NM_152904 ENSG00000128487 SPECC1 CYTSB|HCMOGT-1|HCMOGT1|NSP sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 466-116 chr2 2302553 2302864 + 2 NA intron (NM_015025, intron 1 of 24) intron (NM_015025, intron 1 of 24) -16524 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 297-501 chr8 140770469 140770684 + 2 NA intron (NR_148037, intron 15 of 34) intron (NR_148037, intron 15 of 34) -37923 NR_029892 442893 NR_029892 ENSG00000254324 MIR151A MIR151|MIRN151|hsa-mir-151|hsa-mir-151a microRNA 151a ncRNA 491-233 chr6 143013437 143013920 + 2 NA intron (NR_038987, intron 2 of 2) L1MA7|LINE|L1 23904 NR_038987 100507489 Hs.486645 NR_038987 LINC01277 - long intergenic non-protein coding RNA 1277 ncRNA 294-104 chr14 22150049 22150227 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 282615 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 349-181 chr15 56392124 56392449 + 2 NA intron (NM_198524, intron 7 of 12) MSTA|LTR|ERVL-MaLR 26862 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 188-83 chr18 64443801 64443960 + 2 NA Intergenic Intergenic -183825 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 202-248 chr8 26194528 26194699 + 2 NA Intergenic Intergenic -96895 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 313-476 chr6 121669405 121669632 + 2 NA Intergenic L1MEh|LINE|L1 233872 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 654-129 chr8 138389321 138389732 + 2 NA intron (NM_001362965, intron 1 of 19) L1MB5|LINE|L1 107735 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 581-109 chr4 197257 197673 + 2 NA intron (NR_110527, intron 3 of 4) intron (NR_110527, intron 3 of 4) -15135 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 147-52 chr2 239554569 239554679 + 2 NA Intergenic L1M5|LINE|L1 152876 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 350-92 chr12 29200908 29201103 + 2 NA intron (NM_001271783, intron 1 of 11) LTR22B|LTR|ERVK -22661 NM_001271784 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 149-57 chr2 122300001 122300112 + 2 NA Intergenic MIRb|SINE|MIR 544405 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 224-154 chr2 127306376 127306513 + 2 NA 3' UTR (NM_006609, exon 16 of 16) 3' UTR (NM_006609, exon 16 of 16) -12268 NM_000122 2071 Hs.469872 NM_000122 ENSG00000163161 ERCC3 BTF2|GTF2H|RAD25|TFIIH|TTD2|XPB ERCC excision repair 3, TFIIH core complex helicase subunit protein-coding 304-416 chr5 53620651 53620911 + 2 NA intron (NR_134474, intron 3 of 5) L1ME4a|LINE|L1 60142 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 361-198 chr2 4525070 4525297 + 2 NA Intergenic L1MEc|LINE|L1 131039 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 317-518 chr8 140330834 140331083 + 2 NA intron (NM_001160372, intron 9 of 22) L1MA5|LINE|L1 126786 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 266-64 chr11 73035211 73035395 + 2 NA intron (NM_014824, intron 3 of 19) AluJb|SINE|Alu 107015 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 262-226 chr2 141599440 141599601 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 532181 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 380-330 chr6 26627346 26627711 + 2 NA Intergenic AluJb|SINE|Alu 30575 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 190-186 chr8 133054410 133054547 + 2 NA promoter-TSS (NR_146773) promoter-TSS (NR_146773) -481 NR_146773 100302522 Hs.658759 NR_146773 PTCSC1 NCRNA00197|PTCSC papillary thyroid carcinoma susceptibility candidate 1 ncRNA 506-263 chr7 8179733 8180205 + 2 NA intron (NM_001350836, intron 7 of 14) intron (NM_001350836, intron 7 of 14) 82083 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 238-304 chr5 150750383 150750562 + 2 NA intron (NM_001135643, intron 3 of 13) L1M5|LINE|L1 8048 NM_001135644 51164 Hs.675564 NM_016221 ENSG00000132912 DCTN4 DYN4|P62 dynactin subunit 4 protein-coding 294-355 chr5 2941486 2941735 + 2 NA Intergenic MER85|DNA|PiggyBac 23756 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 198-89 chr17 59621648 59621789 + 2 NA intron (NM_001288653, intron 1 of 31) intron (NM_001288653, intron 1 of 31) 1823 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 598-20 chr10 43495883 43496211 + 2 NA Intergenic Intergenic 58936 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 288-322 chr5 27941797 27942071 + 2 NA Intergenic Intergenic 345731 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 259-143 chr15 100800634 100800880 + 2 NA Intergenic Intergenic -48995 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 283-445 chr8 130333870 130334038 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -37421 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 244-61 chr11 128277878 128278087 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy 69216 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 447-177 chr3 119607618 119607918 + 2 NA intron (NM_015900, intron 2 of 10) intron (NM_015900, intron 2 of 10) 7497 NM_001293225 51365 Hs.437451 NM_015900 ENSG00000144837 PLA1A PS-PLA1|PSPLA1 phospholipase A1 member A protein-coding 628-96 chr4 97687616 97688060 + 2 NA intron (NM_174952, intron 10 of 10) intron (NM_174952, intron 10 of 10) 320912 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 348-419 chr5 104666067 104666332 + 2 NA Intergenic L1ME4c|LINE|L1 -433275 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 166-66 chr21 20422599 20422727 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -163978 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 454-232 chr4 63366260 63366551 + 2 NA Intergenic Ricksha_b|DNA|MULE-MuDR 1043045 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 299-427 chr7 86102451 86102637 + 2 NA Intergenic L1ME1|LINE|L1 -541365 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 200-296 chrX 101998509 101998659 + 2 NA Intergenic L1M4|LINE|L1 -66557 NM_001011657 84460 Hs.496512 NM_001011657 ENSG00000166432 ZMAT1 - zinc finger matrin-type 1 protein-coding 338-173 chr14 97462502 97462810 + 2 NA intron (NR_110165, intron 2 of 2) intron (NR_110165, intron 2 of 2) 3840 NR_110165 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 250-134 chr15 47543872 47544092 + 2 NA intron (NM_001198999, intron 3 of 19) intron (NM_001198999, intron 3 of 19) -173523 NM_001358351 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 319-322 chr3 20909838 20910117 + 2 NA Intergenic Intergenic -495749 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 305-493 chr7 5816795 5816964 + 2 NA Intergenic Intergenic -6281 NR_023382 401303 Hs.372707 NR_023382 ZNF815P ZNF815 zinc finger protein 815, pseudogene pseudo 319-158 chr15 48216072 48216366 + 2 NA intron (NM_001184832, intron 2 of 26) intron (NM_001184832, intron 2 of 26) 9917 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 210-278 chr8 4507213 4507342 + 2 NA intron (NM_033225, intron 2 of 69) intron (NM_033225, intron 2 of 69) 487637 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 362-401 chr7 33204965 33205229 + 2 NA intron (NM_198428, intron 5 of 22) ERVL-E-int|LTR|ERVL 75533 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 183-102 chr4 42027381 42027516 + 2 NA intron (NM_006345, intron 6 of 17) Cheshire|DNA|hAT-Charlie 36918 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 146-69 chr5 7386630 7386752 + 2 NA Intergenic Intergenic -9447 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 395-60 chr11 98382052 98382289 + 2 NA Intergenic Intergenic -638779 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 402-238 chr4 81381540 81381827 + 2 NA Intergenic Intergenic 90224 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 406-21 chr1 207261797 207262194 + 2 NA Intergenic L1MA4|LINE|L1 -59683 NM_000574 1604 Hs.126517 NM_000574 ENSG00000196352 CD55 CHAPLE|CR|CROM|DAF|TC CD55 molecule (Cromer blood group) protein-coding 134-50 chr20 24060623 24060751 + 2 NA Intergenic Intergenic -71908 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 152-53 chr2 117456060 117456187 + 2 NA Intergenic L1MEd|LINE|L1 -358568 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 512-15 chr1 187802324 187802720 + 2 NA Intergenic Intergenic 358894 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 303-51 chr10 83554401 83554596 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 122591 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 263-297 chr4 91825012 91825214 + 2 NA Intergenic L1MB1|LINE|L1 452189 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 413-271 chr6 155958123 155958497 + 2 NA Intergenic Intergenic 11513 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 299-227 chr2 143752690 143752845 + 2 NA intron (NM_018460, intron 13 of 13) LTR16A|LTR|ERVL -184300 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 412-202 chr22 48248009 48248357 + 2 NA Intergenic Intergenic -26181 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 207-317 chr9 110924519 110924667 + 2 NA intron (NM_001351417, intron 5 of 5) FLAM_C|SINE|Alu 112187 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 281-306 chr4 24845749 24845915 + 2 NA intron (NM_001130726, intron 4 of 11) MIR|SINE|MIR 50259 NM_003102 6649 Hs.2420 NM_003102 ENSG00000109610 SOD3 EC-SOD superoxide dismutase 3 protein-coding 274-224 chr2 158758061 158758311 + 2 NA Intergenic Intergenic -23184 NR_135242 100129029 Hs.630724 NR_135242 ENSG00000204380 PKP4-AS1 - PKP4 antisense RNA 1 ncRNA 383-280 chr4 54689259 54689496 + 2 NA intron (NM_000222, intron 1 of 20) Tigger13a|DNA|TcMar-Tigger 31449 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 304-242 chr2 26667973 26668241 + 2 NA Intergenic L2c|LINE|L2 -24615 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 299-456 chr8 99887187 99887363 + 2 NA intron (NM_004374, intron 3 of 3) Tigger5b|DNA|TcMar-Tigger 6432 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 143-61 chr4 55212471 55212569 + 2 NA Intergenic Intergenic -86925 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 485-59 chr12 129046824 129047152 + 2 NA Intergenic Intergenic -62702 NR_104173 283352 Hs.665667 NR_104172 ENSG00000249196 TMEM132D-AS1 - TMEM132D antisense RNA 1 ncRNA 332-399 chr5 6210665 6210925 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 126497 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 282-188 chr19 52437435 52437622 + 2 NA intron (NM_001291368, intron 4 of 4) AluSg7|SINE|Alu 8380 NM_001351679 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 346-146 chr14 87216536 87216808 + 2 NA Intergenic AluJr|SINE|Alu 310894 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 356-115 chr12 111684131 111684480 + 2 NA intron (NM_006768, intron 1 of 11) intron (NM_006768, intron 1 of 11) 1651 NM_006768 8315 Hs.530940 NM_006768 ENSG00000089234 BRAP BRAP2|IMP|RNF52 BRCA1 associated protein protein-coding 297-352 chr5 6288834 6289048 + 2 NA Intergenic L1MC3|LINE|L1 48351 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 337-447 chr5 52016068 52016287 + 2 NA intron (NR_147166, intron 3 of 3) intron (NR_147166, intron 3 of 3) 8146 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 248-345 chr6 48301475 48301634 + 2 NA Intergenic AluJo|SINE|Alu -232865 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 302-139 chr15 27184566 27184821 + 2 NA intron (NM_001270873, intron 3 of 5) L1MDa|LINE|L1 -23374 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 533-67 chr15 91892831 91893177 + 2 NA intron (NR_135775, intron 1 of 10) L2a|LINE|L2 38700 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 191-45 chr13 53258433 53258562 + 2 NA Intergenic Intergenic -106597 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 364-235 chr2 194771182 194771421 + 2 NA Intergenic L1PB1|LINE|L1 40706 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 264-322 chr5 54239267 54239527 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 71176 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 634-62 chr15 87281803 87282215 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -293583 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 644-32 chr18 34671160 34671514 + 2 NA intron (NM_001198939, intron 1 of 21) L1PA4|LINE|L1 -38961 NM_032978 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 369-386 chr7 46259615 46259942 + 2 NA Intergenic Intergenic -338506 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 310-238 chr2 67227792 67228027 + 2 NA intron (NR_110568, intron 1 of 3) intron (NR_110568, intron 1 of 3) -12590 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 658-7 chr1 194570079 194570556 + 2 NA Intergenic Intergenic 1265572 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 372-229 chr2 60720748 60721048 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -35370 NM_022894 64895 Hs.387471 NM_022894 ENSG00000115421 PAPOLG - poly(A) polymerase gamma protein-coding 351-66 chr11 37187478 37187736 + 2 NA Intergenic AluJo|SINE|Alu -589328 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 201-3 chr1 52476213 52476372 + 2 NA intron (NM_001009881, intron 12 of 29) intron (NM_001009881, intron 12 of 29) 71690 NM_032864 84950 Hs.5301 NM_032284 ENSG00000134748 PRPF38A PRP38A|Prp38 pre-mRNA processing factor 38A protein-coding 196-41 chr10 123512821 123512980 + 2 NA Intergenic Intergenic -153455 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 202-22 chr1 245957437 245957561 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 459913 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 307-484 chr8 83838301 83838553 + 2 NA Intergenic Intergenic -344360 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 479-208 chr5 163265774 163266063 + 2 NA Intergenic L2|LINE|L2 -171653 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 122-14 chr13 58506740 58506834 + 2 NA Intergenic L1M3e|LINE|L1 -273670 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 239-135 chr17 71534302 71534521 + 2 NA Intergenic MIR3|SINE|MIR -332232 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 881-34 chr6 47839194 47839913 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 52485 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 384-85 chr12 73495958 73496192 + 2 NA Intergenic L1MA7|LINE|L1 336885 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 392-91 chr15 49889334 49889607 + 2 NA intron (NR_073597, intron 22 of 26) intron (NR_073597, intron 22 of 26) 223909 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 322-556 chr8 140380178 140380397 + 2 NA intron (NM_001160372, intron 7 of 22) L1MB7|LINE|L1 77457 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 541-73 chr15 62098902 62099373 + 2 NA Intergenic Intergenic 32160 NM_207322 145741 Hs.202656 NM_207322 ENSG00000198535 C2CD4A FAM148A|NLF1 C2 calcium dependent domain containing 4A protein-coding 447-211 chr5 34958393 34958767 + 2 NA 3' UTR (NM_001348420, exon 12 of 12) 3' UTR (NM_001348420, exon 12 of 12) 28987 NM_194283 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 412-63 chr12 13636932 13637214 + 2 NA intron (NM_000834, intron 4 of 12) L2a|LINE|L2 -260328 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 567-180 chr8 69382592 69383113 + 2 NA Intergenic L1PA11|LINE|L1 65392 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 505-19 chr1 190222671 190223026 + 2 NA intron (NM_199051, intron 6 of 7) L1MA4|LINE|L1 253162 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 253-262 chr3 86343446 86343638 + 2 NA Intergenic L1MA2|LINE|L1 -138401 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 372-524 chrX 47973624 47973919 + 2 NA Intergenic Intergenic 30218 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 329-52 chr10 39465938 39466202 + 2 NA Intergenic L1P1|LINE|L1 769474 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 246-86 chr12 20509001 20509172 + 2 NA intron (NM_000921, intron 1 of 15) intron (NM_000921, intron 1 of 15) -62778 NM_001244683 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 208-273 chr8 126524786 126524945 + 2 NA Intergenic L1M4|LINE|L1 33613 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 414-143 chr2 17458476 17458709 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 59848 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 570-151 chr4 177787692 177788239 + 2 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 59208 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 310-27 chr1 194409545 194409764 + 2 NA Intergenic Intergenic 1104909 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 355-348 chr3 187841374 187841553 + 2 NA Intergenic AluY|SINE|Alu -95995 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 289-116 chr12 97770995 97771178 + 2 NA Intergenic Intergenic -14569 NR_077240 643711 Hs.585557 NR_077240 ENSG00000257501 LOC643711 - platelet activating factor acetylhydrolase 1b catalytic subunit 2 pseudogene pseudo 213-103 chr15 99412449 99412600 + 2 NA Intergenic Intergenic -152893 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 362-67 chr10 64210904 64211137 + 2 NA Intergenic Intergenic -614508 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 270-260 chr4 43059252 43059456 + 2 NA Intergenic L1M1|LINE|L1 166088 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 523-154 chr20 46803268 46803666 + 2 NA Intergenic Intergenic -91157 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 424-74 chr14 79071508 79071774 + 2 NA intron (NR_073547, intron 14 of 20) L1MA3|LINE|L1 -128341 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 123-28 chr2 62210177 62210274 + 2 NA intron (NM_006577, intron 1 of 1) MIRb|SINE|MIR 4399 NR_049824 100847087 NR_049824 ENSG00000266097 MIR5192 - microRNA 5192 ncRNA 370-490 chrX 93912356 93912672 + 2 NA Intergenic Intergenic 238308 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 150-41 chr15 65576758 65576864 + 2 NA 3' UTR (NM_016395, exon 11 of 11) 3' UTR (NM_016395, exon 11 of 11) 34320 NR_045106 81556 Hs.6686 NM_030800 ENSG00000138614 INTS14 C15orf44|VWA9 integrator complex subunit 14 protein-coding 518-209 chr4 88038110 88038545 + 2 NA exon (NM_000297, exon 4 of 15) exon (NM_000297, exon 4 of 15) 30692 NR_156488 5311 Hs.181272 NM_000297 ENSG00000118762 PKD2 APKD2|PC2|PKD4|Pc-2|TRPP2 polycystin 2, transient receptor potential cation channel protein-coding 257-242 chr20 56237686 56237908 + 2 NA Intergenic Intergenic -10935 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 339-405 chr4 57751182 57751411 + 2 NA Intergenic Intergenic 325424 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 429-197 chr3 96874027 96874365 + 2 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 59602 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 264-235 chr20 15050079 15050292 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -120667 NR_110318 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 403-342 chrX 143151825 143152201 + 2 NA Intergenic Intergenic 126085 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 268-414 chr8 122931912 122932125 + 2 NA intron (NM_001362797, intron 3 of 4) intron (NM_001362797, intron 3 of 4) 93754 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 270-118 chr15 25279474 25279701 + 2 NA intron (NR_146177, intron 146 of 147) intron (NR_146177, intron 146 of 147) 1244 NR_001295 338428 NR_001295 ENSG00000274640 SNORD109A HBII-438A small nucleolar RNA, C/D box 109A snoRNA 463-17 chr1 98972171 98972570 + 2 NA intron (NM_001037317, intron 1 of 5) intron (NM_001037317, intron 1 of 5) -31906 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 351-363 chr4 172740205 172740496 + 2 NA intron (NM_001034845, intron 5 of 12) L1ME3A|LINE|L1 -13472 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 308-238 chr2 108098925 108099079 + 2 NA Intergenic L1MB5|LINE|L1 -46247 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 267-199 chr2 113850747 113850943 + 2 NA intron (NR_110174, intron 2 of 4) intron (NR_110174, intron 2 of 4) -39089 NR_102318 10096 Hs.433512 NM_005721 ENSG00000115091 ACTR3 ARP3 actin related protein 3 protein-coding 310-360 chr4 30605795 30606008 + 2 NA Intergenic Intergenic -114468 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 255-412 chr8 46682921 46683080 + 2 NA Intergenic L1PB2|LINE|L1 -65357 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 309-256 chr2 102341348 102341516 + 2 NA intron (NR_104167, intron 6 of 8) intron (NR_104167, intron 6 of 8) 4175 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 255-389 chr7 72002838 72003078 + 2 NA intron (NM_001363460, intron 4 of 5) L1MA8|LINE|L1 334433 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 613-90 chr4 11692533 11692958 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR 76723 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 271-472 chr9 18585712 18585959 + 2 NA intron (NM_052866, intron 4 of 12) L1PREC2|LINE|L1 12529 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 332-226 chr19 30102175 30102356 + 2 NA Intergenic Intergenic 160026 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 399-338 chrX 55043213 55043476 + 2 NA Intergenic L1PB1|LINE|L1 -12367 NM_001037968 212 Hs.522666 NM_000032 ENSG00000158578 ALAS2 ALAS-E|ALASE|ANH1|ASB|SIDBA1|XLDPP|XLEPP|XLSA 5'-aminolevulinate synthase 2 protein-coding 289-396 chr5 148339400 148339574 + 2 NA intron (NM_001040433, intron 3 of 3) intron (NM_001040433, intron 3 of 3) 3928 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 208-238 chr6 123097274 123097415 + 2 NA Intergenic Intergenic 101109 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 261-200 chr2 167868296 167868463 + 2 NA intron (NR_131227, intron 3 of 4) intron (NR_131227, intron 3 of 4) 49707 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 206-271 chr8 126024170 126024332 + 2 NA Intergenic Intergenic -73054 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 323-524 chr8 10644202 10644399 + 2 NA intron (NM_178857, intron 1 of 3) MIR3|SINE|MIR 10843 NM_178857 94137 Hs.33538 NM_178857 ENSG00000183638 RP1L1 DCDC4B RP1 like 1 protein-coding 312-452 chr6 62120767 62120967 + 2 NA intron (NR_146874, intron 2 of 13) HERVL-int|LTR|ERVL 165358 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 409-207 chr3 166880600 166880864 + 2 NA Intergenic Intergenic -17951 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 305-486 chr6 143602622 143602901 + 2 NA Intergenic Intergenic -5419 NM_014721 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 270-52 chr11 14915386 14915577 + 2 NA Intergenic AluJr|SINE|Alu -23276 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 297-227 chr2 133655751 133656034 + 2 NA Intergenic Intergenic -87429 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 484-196 chr4 132951556 132951986 + 2 NA Intergenic Intergenic 197345 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 291-18 chr1 115427328 115427526 + 2 NA Intergenic MIR|SINE|MIR -89191 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 290-428 chr7 69538070 69538286 + 2 NA Intergenic MIR3|SINE|MIR 59446 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 336-494 chr6 75566974 75567181 + 2 NA Intergenic Intergenic -34432 NM_001304792 26054 Hs.485784 NM_015571 ENSG00000112701 SENP6 SSP1|SUSP1 SUMO specific peptidase 6 protein-coding 126-40 chr3 71289373 71289439 + 2 NA promoter-TSS (NR_126463) promoter-TSS (NR_126463) -352 NR_126463 104502416 Hs.658538 NR_126463 ENSG00000244203 FOXP1-AS1 - FOXP1 antisense RNA 1 ncRNA 332-290 chr20 2588873 2589057 + 2 NA intron (NM_080751, intron 7 of 19) L1MEg|LINE|L1 52358 NM_080751 117532 Hs.352626 NM_080751 ENSG00000149488 TMC2 C20orf145 transmembrane channel like 2 protein-coding 259-43 chr10 46084033 46084179 + 2 NA Intergenic MIRb|SINE|MIR -25389 NR_126580 653268 Hs.447454 NM_001077685 AGAP7P AGAP-7|AGAP7|CTGLF4|bA109G10.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain 7, pseudogene pseudo 136-18 chr12 115055764 115055870 + 2 NA Intergenic L1MA6|LINE|L1 -371642 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 667-46 chr2 24147850 24148471 + 2 NA intron (NM_001145710, intron 7 of 10) L1MCc|LINE|L1 24691 NM_001145710 375190 Hs.710370 NM_198553 ENSG00000219626 FAM228B - family with sequence similarity 228 member B protein-coding 522-188 chr4 37491586 37492058 + 2 NA intron (NM_001104629, intron 1 of 3) HAL1|LINE|L1 37897 NM_001104629 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 205-71 chr12 126568709 126568873 + 2 NA Intergenic Intergenic -119464 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 385-337 chr6 119872858 119873099 + 2 NA Intergenic Intergenic -142201 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 159-27 chr13 91746861 91746977 + 2 NA intron (NM_004466, intron 4 of 7) L1ME3G|LINE|L1 348298 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 334-92 chr11 83544427 83544598 + 2 NA intron (NM_001142699, intron 19 of 27) MIRc|SINE|MIR 137913 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 358-485 chr8 106516600 106516898 + 2 NA intron (NM_001198532, intron 1 of 15) MER44A|DNA|TcMar-Tigger 68825 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 350-72 chr11 48269879 48270071 + 2 NA Intergenic L1MA1|LINE|L1 6114 NM_001004726 390113 Hs.553742 NM_001004726 ENSG00000176567 OR4X1 OR11-104 olfactory receptor family 4 subfamily X member 1 (gene/pseudogene) protein-coding 687-109 chr7 62804358 62804880 + 2 NA Intergenic ALR/Alpha|Satellite|centr 499437 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 224-167 chr2 220819684 220819853 + 2 NA Intergenic Intergenic 752536 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 669-33 chr15 91684379 91684928 + 2 NA Intergenic Intergenic -169055 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 353-385 chr4 106457697 106457964 + 2 NA Intergenic L1M5|LINE|L1 24206 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 335-163 chr14 76663418 76663588 + 2 NA Intergenic AluJb|SINE|Alu -97965 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 517-84 chr15 42256089 42256454 + 2 NA TTS (NM_001110503) TTS (NM_001110503) 17162 NM_015497 25963 Hs.511138 NM_015497 ENSG00000103978 TMEM87A - transmembrane protein 87A protein-coding 295-22 chr1 170242638 170242877 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 41451 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 511-143 chr20 15281481 15281857 + 2 NA intron (NM_001351663, intron 6 of 17) THE1D-int|LTR|ERVL-MaLR 84829 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 372-243 chr2 100553839 100554178 + 2 NA Intergenic L1MB7|LINE|L1 -8985 NM_024065 79031 Hs.469459 NM_024065 ENSG00000115539 PDCL3 HTPHLP|PHLP2A|PHLP3|VIAF|VIAF1 phosducin like 3 protein-coding 426-240 chr5 89796205 89796509 + 2 NA Intergenic L1MC3|LINE|L1 220363 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 395-2 chr1 14973178 14973395 + 2 NA intron (NM_001370231, intron 3 of 8) L2a|LINE|L2 27367 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 357-458 chr8 127240403 127240715 + 2 NA Intergenic Intergenic -4078 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 327-186 chr16 59614375 59614632 + 2 NA Intergenic Intergenic 140688 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 462-284 chr8 89505381 89505704 + 2 NA Intergenic L1ME3B|LINE|L1 252169 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 315-103 chr12 43151731 43152017 + 2 NA Intergenic Intergenic -3441 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 315-435 chr7 9581535 9581830 + 2 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat -52588 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 383-314 chr5 54634143 54634413 + 2 NA Intergenic Intergenic 69046 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 289-466 chr8 88452225 88452442 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -124850 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 229-228 chr20 46086280 46086423 + 2 NA intron (NM_001348150, intron 1 of 8) intron (NM_001348150, intron 1 of 8) 3611 NM_001348148 57727 Hs.654991 NM_020967 ENSG00000124160 NCOA5 CIA|bA465L10.6 nuclear receptor coactivator 5 protein-coding 326-591 chrX 128067187 128067460 + 2 NA Intergenic L1M4|LINE|L1 -14920 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 213-265 chr7 61922358 61922518 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1381618 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 585-133 chr5 178990224 178990670 + 2 NA intron (NM_000843, intron 5 of 10) intron (NM_000843, intron 5 of 10) 4873 NM_000843 2916 Hs.248131 NM_000843 ENSG00000113262 GRM6 CSNB1B|GPRC1F|MGLUR6|mGlu6 glutamate metabotropic receptor 6 protein-coding 471-55 chr11 98128394 98128690 + 2 NA Intergenic L1MA4A|LINE|L1 -892407 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 445-98 chr18 6760379 6760786 + 2 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -30720 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 342-455 chr6 61309802 61309979 + 2 NA Intergenic ALR/Alpha|Satellite|centr -264240 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 236-183 chr2 130308842 130309022 + 2 NA Intergenic Intergenic 33176 NM_001321119 84317 Hs.104203 NM_032357 ENSG00000136710 CCDC115 CDG2O|ccp1 coiled-coil domain containing 115 protein-coding 246-220 chr2 211176335 211176499 + 2 NA Intergenic Intergenic 558846 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 183-21 chr11 15988115 15988287 + 2 NA intron (NM_033326, intron 14 of 15) intron (NM_033326, intron 14 of 15) -18580 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 384-186 chr2 154582153 154582441 + 2 NA Intergenic Intergenic -116284 NM_001260508 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 414-13 chr1 97167238 97167540 + 2 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 71466 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 504-252 chr8 33948509 33948894 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -348595 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 367-107 chr13 31715122 31715375 + 2 NA Intergenic MER41C|LTR|ERV1 -24278 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 214-243 chr4 120974118 120974299 + 2 NA Intergenic Intergenic -51342 NM_018699 11107 Hs.666782 NM_018699 ENSG00000138738 PRDM5 BCS2|PFM2 PR/SET domain 5 protein-coding 383-379 chr8 75928611 75928897 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 388786 NM_004133 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 485-142 chr2 116256886 116257225 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 913240 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 322-504 chr7 92752249 92752470 + 2 NA intron (NM_001259, intron 3 of 7) intron (NM_001259, intron 3 of 7) 81600 NM_001259 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 476-19 chr1 236854740 236855140 + 2 NA intron (NM_000254, intron 18 of 32) intron (NM_000254, intron 18 of 32) 59648 NM_001291940 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 281-427 chr8 9221935 9222100 + 2 NA Intergenic L3|LINE|CR1 33018 NR_125431 101929128 NR_125431 ENSG00000248538 LOC101929128 - uncharacterized LOC101929128 ncRNA 320-419 chr5 15548239 15548422 + 2 NA intron (NM_001278317, intron 1 of 3) MARNA|DNA|TcMar-Mariner 46892 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 405-32 chr10 71871084 71871303 + 2 NA Intergenic AluSz|SINE|Alu -19942 NM_001042466 5660 Hs.523004 NM_002778 ENSG00000197746 PSAP GLBA|SAP1 prosaposin protein-coding 402-162 chr2 122546506 122546844 + 2 NA Intergenic L3|LINE|CR1 526806 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 405-168 chr2 194606620 194606905 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -123833 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 205-273 chr8 79272349 79272524 + 2 NA Intergenic Intergenic -59752 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 246-279 chr3 174764782 174764967 + 2 NA Intergenic Intergenic -94460 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 468-190 chr3 21574177 21574603 + 2 NA intron (NM_024697, intron 2 of 7) L1MC5|LINE|L1 31601 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 445-181 chr3 150071322 150071742 + 2 NA Intergenic Intergenic -24911 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 378-28 chr1 167478420 167478684 + 2 NA intron (NM_000734, intron 1 of 7) L3|LINE|CR1 39977 NM_000734 919 Hs.156445 NM_000734 ENSG00000198821 CD247 CD3-ZETA|CD3H|CD3Q|CD3Z|IMD25|T3Z|TCRZ CD247 molecule protein-coding 479-124 chr20 12514152 12514513 + 2 NA Intergenic Intergenic 422631 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 350-519 chr8 91965300 91965617 + 2 NA intron (NM_004349, intron 10 of 10) intron (NM_004349, intron 10 of 10) 52222 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 351-75 chr11 82079256 82079579 + 2 NA intron (NR_120571, intron 5 of 7) intron (NR_120571, intron 5 of 7) -188581 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 527-72 chr13 104920340 104920711 + 2 NA Intergenic L1PB1|LINE|L1 -545342 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 513-248 chr6 69608509 69608949 + 2 NA Intergenic L1ME3|LINE|L1 187737 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 303-282 chr3 56178740 56179006 + 2 NA intron (NR_132749, intron 3 of 17) L2a|LINE|L2 289594 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 316-170 chr14 54297817 54297988 + 2 NA Intergenic Intergenic -98966 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 336-392 chr4 31517514 31517810 + 2 NA intron (NR_149121, intron 1 of 2) MIRc|SINE|MIR 11118 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 397-276 chr6 53040259 53040462 + 2 NA intron (NM_014920, intron 2 of 13) MLT1F2|LTR|ERVL-MaLR 21442 NM_016513 22858 Hs.417022 NM_014920 ENSG00000112144 ICK ECO|EJM10|LCK2|MRK intestinal cell kinase protein-coding 724-16 chr13 94932590 94933124 + 2 NA intron (NR_110754, intron 4 of 4) intron (NR_110754, intron 4 of 4) -27184 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 354-187 chr18 56188301 56188527 + 2 NA intron (NR_148972, intron 1 of 8) intron (NR_148972, intron 1 of 8) 2848 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 131-77 chr8 99217561 99217675 + 2 NA intron (NM_017890, intron 17 of 61) intron (NM_017890, intron 17 of 61) 204352 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 449-153 chr21 23298353 23298634 + 2 NA Intergenic Intergenic 86342 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 629-11 chr1 156238741 156239327 + 2 NA intron (NM_001199662, intron 4 of 6) MIR3|SINE|MIR -3150 NM_199173 632 Hs.654541 NM_199173 ENSG00000242252 BGLAP BGP|OC|OCN bone gamma-carboxyglutamate protein protein-coding 257-104 chr13 107909767 107909985 + 2 NA Intergenic Intergenic -42380 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 306-533 chr8 138307167 138307367 + 2 NA intron (NM_015912, intron 3 of 19) THE1B|LTR|ERVL-MaLR 189994 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 392-99 chr15 88215604 88215858 + 2 NA intron (NM_001007156, intron 3 of 15) intron (NM_001007156, intron 3 of 15) -9757 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 429-269 chr7 21300189 21300461 + 2 NA Intergenic L2a|LINE|L2 -127758 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 403-263 chr6 1981171 1981408 + 2 NA intron (NM_001253846, intron 4 of 10) L1PA11|LINE|L1 194702 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 222-50 chr10 113206015 113206232 + 2 NA Intergenic L1MA2|LINE|L1 76852 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 334-450 chr6 6075829 6076073 + 2 NA Intergenic L1MEi|LINE|L1 -68346 NM_001278710 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 190-131 chr4 35243505 35243644 + 2 NA Intergenic L1MEf|LINE|L1 -973827 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 428-10 chr1 158701480 158701839 + 2 NA promoter-TSS (NM_001005279) promoter-TSS (NM_001005279) -963 NM_001005279 81448 Hs.554489 NM_001005279 ENSG00000196171 OR6K2 OR1-17 olfactory receptor family 6 subfamily K member 2 protein-coding 257-92 chr12 78550598 78550846 + 2 NA Intergenic Intergenic -190976 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 491-227 chr6 64597817 64598217 + 2 NA intron (NM_001292009, intron 24 of 43) L1PB4|LINE|L1 -703401 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 577-65 chr15 59318327 59318726 + 2 NA intron (NM_004998, intron 1 of 27) intron (NM_004998, intron 1 of 27) 54345 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 420-182 chr3 35029814 35030178 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 364027 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 605-57 chr2 185810566 185811017 + 2 NA intron (NM_173651, intron 17 of 22) MSTA-int|LTR|ERVL-MaLR -10640 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 258-164 chr17 71216222 71216398 + 2 NA Intergenic L1MA8|LINE|L1 -14131 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 163-98 chr4 108178961 108179079 + 2 NA Intergenic Tigger16a|DNA|TcMar-Tigger 6900 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 346-34 chr1 199632185 199632370 + 2 NA Intergenic Intergenic -395433 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 243-63 chr11 24881978 24882150 + 2 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 385011 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 436-197 chr3 175073931 175074240 + 2 NA intron (NM_207015, intron 1 of 13) L2a|LINE|L2 41157 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 262-444 chr8 140340365 140340589 + 2 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 117267 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 424-270 chr8 34313940 34314292 + 2 NA Intergenic Intergenic -469805 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 242-427 chr9 22922100 22922300 + 2 NA Intergenic MER54B|LTR|ERVL 276000 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 277-384 chr7 82483691 82483849 + 2 NA Intergenic Intergenic -39814 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 155-52 chr2 68379339 68379426 + 2 NA intron (NM_002664, intron 1 of 8) intron (NM_002664, intron 1 of 8) 14100 NM_002664 5341 Hs.468840 NM_002664 ENSG00000115956 PLEK P47 pleckstrin protein-coding 345-522 chr8 83076505 83076773 + 2 NA Intergenic L1M4|LINE|L1 164535 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 268-75 chr12 7341870 7342095 + 2 NA Intergenic Intergenic 37650 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 248-372 chr7 39051369 39051558 + 2 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -37896 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 272-416 chr7 43322791 43322995 + 2 NA intron (NM_001287059, intron 4 of 27) intron (NM_001287059, intron 4 of 27) 171998 NR_037508 100500829 NR_037508 ENSG00000264069 MIR3943 - microRNA 3943 ncRNA 253-48 chr10 35055604 35055791 + 2 NA intron (NM_001324376, intron 4 of 21) intron (NM_001324376, intron 4 of 21) 18586 NM_001198778 8453 Hs.82919 NM_003591 ENSG00000108094 CUL2 - cullin 2 protein-coding 447-253 chr8 13861405 13861768 + 2 NA Intergenic L1ME3A|LINE|L1 231896 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 240-204 chr19 38160678 38160904 + 2 NA intron (NM_015073, intron 13 of 21) L1ME4b|LINE|L1 -2305 NR_145800 109623473 NR_145800 SNORD152 - small nucleolar RNA, C/D box 152 snoRNA 217-275 chr4 141740368 141740500 + 2 NA Intergenic L1MA8|LINE|L1 103851 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 339-396 chr4 26112626 26112823 + 2 NA Intergenic Intergenic 198532 NM_001145432 389203 Hs.479386 NM_001145432 ENSG00000250317 SMIM20 C4orf52|MITRAC7|PNX small integral membrane protein 20 protein-coding 259-5 chr1 41828520 41828728 + 2 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 90298 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 588-38 chr14 58697882 58698342 + 2 NA Intergenic Intergenic 59275 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 236-88 chr12 52599293 52599498 + 2 NA intron (NM_080747, intron 1 of 8) intron (NM_080747, intron 1 of 8) 2068 NM_080747 140807 Hs.662013 NM_080747 ENSG00000170486 KRT72 K6IRS2|K6irs|KRT6|KRT6IRS2 keratin 72 protein-coding 365-33 chr1 238995872 238996075 + 2 NA Intergenic LTR81B|LTR|Gypsy -390595 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 512-284 chr8 131705908 131706337 + 2 NA Intergenic Intergenic -197971 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 272-153 chr17 68733506 68733690 + 2 NA Intergenic Intergenic 105444 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 449-30 chr10 56258741 56259080 + 2 NA Intergenic L1PA17|LINE|L1 102349 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 285-99 chr13 55886968 55887227 + 2 NA Intergenic Intergenic 712643 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 749-87 chr7 97734048 97734594 + 2 NA intron (NM_013996, intron 4 of 5) intron (NM_013996, intron 4 of 5) 2235 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 330-363 chr3 163798119 163798416 + 2 NA Intergenic L1MCa|LINE|L1 373289 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 218-266 chr5 57731605 57731748 + 2 NA Intergenic L2a|LINE|L2 81016 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 473-213 chr5 42719617 42719998 + 2 NA 3' UTR (NM_000163, exon 10 of 10) 3' UTR (NM_000163, exon 10 of 10) -37011 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 250-227 chr2 184794687 184794877 + 2 NA intron (NM_194250, intron 1 of 3) L1PBa|LINE|L1 196253 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 130-26 chr16 13683110 13683206 + 2 NA Intergenic L1ME4a|LINE|L1 -236999 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 908-35 chr5 7971178 7971853 + 2 NA Intergenic Intergenic 102367 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 187-55 chr15 68244069 68244209 + 2 NA Intergenic Intergenic -14411 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 327-19 chr1 157796664 157796946 + 2 NA intron (NM_001159397, intron 9 of 9) Charlie20a|DNA|hAT-Charlie -19673 NR_125358 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 431-182 chr3 90053175 90053548 + 2 NA Intergenic L2a|LINE|L2 945740 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 262-101 chr12 89682372 89682582 + 2 NA intron (NM_001366520, intron 1 of 21) L1MC4a|LINE|L1 26361 NM_001366525 490 Hs.506276 NM_001682 ENSG00000070961 ATP2B1 PMCA1|PMCA1kb ATPase plasma membrane Ca2+ transporting 1 protein-coding 371-320 chr5 104579556 104579792 + 2 NA Intergenic Intergenic -519800 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 259-148 chr16 22678589 22678806 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 132999 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 223-47 chr11 23268420 23268588 + 2 NA Intergenic Arthur1C|DNA|hAT-Tip100 150686 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 275-176 chr2 22566123 22566330 + 2 NA Intergenic Intergenic 29747 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 193-104 chr2 60326691 60326834 + 2 NA Intergenic L2a|LINE|L2 56274 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 503-147 chr2 50488518 50488972 + 2 NA intron (NM_001330093, intron 15 of 22) intron (NM_001330093, intron 15 of 22) -140989 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 188-67 chr16 5479975 5480151 + 2 NA Intergenic Intergenic 136187 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 359 chr1 4546482 4546768 + 2 NA Intergenic Intergenic -24862 NR_147025 105376679 NR_147025 ENSG00000232596 LINC01646 - long intergenic non-protein coding RNA 1646 ncRNA 348-33 chr1 207176437 207176629 + 2 NA Intergenic L1MEg|LINE|L1 72300 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 202-126 chr2 114092963 114093088 + 2 NA Intergenic L1MC1|LINE|L1 -113041 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 312-357 chr3 197902421 197902712 + 2 NA intron (NM_001323029, intron 9 of 11) L1M1|LINE|L1 47359 NM_001323030 84223 Hs.591675 NM_032263 ENSG00000114473 IQCG CFAP122|DRC9 IQ motif containing G protein-coding 347-97 chr12 74576384 74576693 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 38703 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 148-60 chr4 57328927 57329046 + 2 NA Intergenic Intergenic -96886 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 262-158 chr16 51291966 51292185 + 2 NA intron (NR_039672, intron 6 of 6) HAL1ME|LINE|L1 -140803 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 424-283 chr8 125748555 125748893 + 2 NA Intergenic Intergenic 202473 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 496-101 chr15 77399431 77399898 + 2 NA intron (NM_024776, intron 1 of 7) L1MA3|LINE|L1 20440 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 447-75 chr14 61620882 61621254 + 2 NA intron (NR_039985, intron 1 of 2) MIR|SINE|MIR -50415 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 249-73 chr11 37578071 37578306 + 2 NA Intergenic L1M2|LINE|L1 -360413 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 496-78 chr14 48800046 48800480 + 2 NA Intergenic L1MA7|LINE|L1 786117 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 324-40 chr1 221510868 221511146 + 2 NA Intergenic Intergenic -174711 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 364-399 chr6 154073788 154074011 + 2 NA intron (NM_001285522, intron 1 of 1) AluSz6|SINE|Alu -12608 NM_001285526 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 622-130 chr7 54248047 54248380 + 2 NA Intergenic Intergenic -82484 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 226-143 chr19 31630939 31631103 + 2 NA Intergenic Intergenic 38740 NM_001205273 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 395-225 chr3 108001633 108001991 + 2 NA Intergenic MIRb|SINE|MIR 89276 NM_198793 961 Hs.446414 NM_001777 ENSG00000196776 CD47 IAP|MER6|OA3 CD47 molecule protein-coding 252-366 chr6 53138553 53138770 + 2 NA intron (NM_003643, intron 2 of 5) intron (NM_003643, intron 2 of 5) 10180 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 469-29 chr10 50813529 50813854 + 2 NA intron (NM_001370131, intron 9 of 11) intron (NM_001370131, intron 9 of 11) 71936 NM_014576 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 397-123 chr18 11396442 11396800 + 2 NA Intergenic L1M5|LINE|L1 -57857 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 322-470 chr6 145214390 145214669 + 2 NA Intergenic Intergenic 472348 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 345-359 chr3 112393837 112394125 + 2 NA Intergenic Intergenic 60825 NM_005944 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 509-110 chr2 48607981 48608427 + 2 NA intron (NM_172311, intron 3 of 10) AluSx1|SINE|Alu -9576 NM_001193487 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 261-283 chr4 71316183 71316343 + 2 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -22790 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 294-159 chr16 79843585 79843839 + 2 NA Intergenic Intergenic 48463 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 169-32 chr13 100218546 100218691 + 2 NA intron (NR_148031, intron 7 of 22) MLT1E1A|LTR|ERVL-MaLR 129525 NR_148028 5095 Hs.80741 NM_000282 ENSG00000175198 PCCA - propionyl-CoA carboxylase subunit alpha protein-coding 354-67 chr10 129544341 129544519 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 77189 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 339-381 chr3 135712602 135712836 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -253009 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 395-194 chr20 1714615 1714852 + 2 NA Intergenic L1PBa|LINE|L1 -56954 NM_080816 55423 Hs.590883 NM_018556 ENSG00000089012 SIRPG CD172g|SIRP-B2|SIRPB2|SIRPgamma|bA77C3.1 signal regulatory protein gamma protein-coding 324-117 chr12 41546731 41547001 + 2 NA intron (NM_001164595, intron 5 of 9) L2|LINE|L2 109127 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 283-234 chr2 83023860 83024134 + 2 NA Intergenic Intergenic 167194 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 143-49 chr2 182754359 182754470 + 2 NA intron (NR_073367, intron 15 of 22) intron (NR_073367, intron 15 of 22) 38157 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 227-294 chr5 126523283 126523456 + 2 NA Intergenic Intergenic 58219 NM_001146322 65983 Hs.363558 NM_023927 ENSG00000155324 GRAMD2B GRAMD3|NS3TP2 GRAM domain containing 2B protein-coding 393-252 chr4 147283394 147283669 + 2 NA Intergenic Intergenic 61186 NR_031662 100313938 NR_031662 ENSG00000221369 MIR548G MIRN548G|hsa-mir-548g microRNA 548g ncRNA 273-372 chr5 155316413 155316662 + 2 NA Intergenic Intergenic 302782 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 163-38 chr12 125448652 125448765 + 2 NA intron (NM_052907, intron 3 of 8) L1ME2|LINE|L1 122092 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 279-425 chr8 131385969 131386186 + 2 NA Intergenic Intergenic -345168 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 353-105 chr12 25770142 25770365 + 2 NA Intergenic Intergenic 103826 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 462-246 chr6 17962887 17963119 + 2 NA intron (NM_001243423, intron 2 of 2) intron (NM_001243423, intron 2 of 2) 24632 NM_001105567 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 338-460 chr6 5054760 5054949 + 2 NA intron (NR_126015, intron 2 of 3) MER4D0|LTR|ERV1 24882 NR_126019 100129461 Hs.131700 NR_126015 ENSG00000272142 LYRM4-AS1 - LYRM4 antisense RNA 1 ncRNA 247-233 chr20 24502815 24502967 + 2 NA intron (NM_001323606, intron 2 of 4) intron (NM_001323606, intron 2 of 4) 32930 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 322-285 chr20 5488055 5488371 + 2 NA Intergenic (AATT)n|Simple_repeat|Simple_repeat 16383 NR_015406 149837 Hs.123609 NR_015406 ENSG00000205181 LINC00654 - long intergenic non-protein coding RNA 654 ncRNA 317-398 chr5 133300110 133300299 + 2 NA intron (NM_015082, intron 6 of 15) intron (NM_015082, intron 6 of 15) 127502 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 237-44 chr10 130603401 130603618 + 2 NA Intergenic L1MA3|LINE|L1 359159 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 590-172 chr8 126660933 126661360 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -102668 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 350-241 chr2 133318311 133318551 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 52236 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 323-395 chr5 17608898 17609103 + 2 NA Intergenic Intergenic 46638 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 254-225 chr20 51302495 51302697 + 2 NA Intergenic Intergenic 150381 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 321-54 chr10 31625302 31625565 + 2 NA Intergenic L1MC5|LINE|L1 -225678 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 424-171 chr3 44711351 44711762 + 2 NA Intergenic Intergenic -1087 NM_001282880 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 246-9 chr1 100657088 100657259 + 2 NA Intergenic Intergenic -10169 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 340-49 chr10 53124900 53125118 + 2 NA Intergenic Intergenic -353309 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 168-92 chr5 141448562 141448696 + 2 NA intron (NM_003735, intron 1 of 3) L1MC5a|LINE|L1 18122 NM_032094 26025 Hs.368160 NM_003735 ENSG00000253159 PCDHGA12 CDH21|FIB3|PCDH-GAMMA-A12 protocadherin gamma subfamily A, 12 protein-coding 326-538 chr8 96521875 96522131 + 2 NA intron (NM_002998, intron 1 of 4) intron (NM_002998, intron 1 of 4) 28190 NM_002998 6383 Hs.1501 NM_002998 ENSG00000169439 SDC2 CD362|HSPG|HSPG1|SYND2 syndecan 2 protein-coding 261-258 chr3 147054298 147054471 + 2 NA Intergenic L1M4|LINE|L1 132461 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 326-25 chr1 111637866 111638060 + 2 NA intron (NM_001010935, intron 2 of 8) L1ME4a|LINE|L1 -17565 NR_160737 107985184 NR_160737 LOC107985184 - uncharacterized LOC107985184 ncRNA 567-104 chr22 24882081 24882449 + 2 NA intron (NM_001098498, intron 14 of 23) AluJb|SINE|Alu 64430 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 238-251 chr3 157187913 157188145 + 2 NA Intergenic L1PA13|LINE|L1 -27269 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 497-107 chr19 22025180 22025537 + 2 NA Intergenic MLT2A1|LTR|ERVL -14415 NM_001329972 7757 Hs.732975 NM_007153 ENSG00000160321 ZNF208 PMIDP|ZNF95 zinc finger protein 208 protein-coding 448-6 chr1 86271055 86271349 + 2 NA Intergenic Intergenic 86485 NR_107010 102465842 NR_107010 ENSG00000278281 MIR7856 hsa-mir-7856 microRNA 7856 ncRNA 271-365 chr6 2276536 2276699 + 2 NA intron (NR_046229, intron 3 of 6) L1ME2z|LINE|L1 30864 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 677-18 chr11 26203335 26203941 + 2 NA intron (NM_001313726, intron 1 of 27) MER34|LTR|ERV1 14515 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 184-172 chr8 92729737 92729886 + 2 NA intron (NR_046114, intron 1 of 2) intron (NR_046114, intron 1 of 2) 56249 NR_046114 441369 Hs.521683 NR_046114 ENSG00000248858 FLJ46284 - uncharacterized LOC441369 ncRNA 360-304 chr3 80859140 80859398 + 2 NA Intergenic L1MA3|LINE|L1 88565 NR_147145 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 299-446 chr8 71006287 71006511 + 2 NA Intergenic MER30|DNA|hAT-Charlie 337060 NM_001011720 389668 Hs.458938 NM_001011720 ENSG00000221947 XKR9 XRG9 XK related 9 protein-coding 380-228 chr21 32239317 32239637 + 2 NA Intergenic Intergenic 39572 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 442-286 chr8 88430676 88430979 + 2 NA Intergenic Intergenic -103344 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 801-26 chr19 34042887 34043593 + 2 NA Intergenic L2|LINE|L2 -129264 NM_015578 26065 Hs.744009 NM_015578 ENSG00000257103 LSM14A C19orf13|FAM61A|RAP55|RAP55A LSM14A mRNA processing body assembly factor protein-coding 219-191 chr2 210168379 210168521 + 2 NA intron (NM_001307976, intron 1 of 13) intron (NM_001307976, intron 1 of 13) 2959 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 298-187 chr19 27387896 27388066 + 2 NA Intergenic ALR/Alpha|Satellite|centr -405450 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 354-73 chr11 8214141 8214397 + 2 NA Intergenic L3|LINE|CR1 -45244 NM_001206672 79608 Hs.231850 NM_024557 ENSG00000166405 RIC3 AYST720|PRO1385 RIC3 acetylcholine receptor chaperone protein-coding 387-109 chr14 69903996 69904235 + 2 NA intron (NM_001034852, intron 1 of 11) MLT1H1|LTR|ERVL-MaLR 24699 NM_001034852 64093 Hs.497349 NM_022137 ENSG00000198732 SMOC1 OAS SPARC related modular calcium binding 1 protein-coding 429-19 chr1 177427737 177427989 + 2 NA Intergenic L2|LINE|L2 76277 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 373-351 chr6 18840457 18840672 + 2 NA Intergenic Intergenic 268780 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 430-75 chr13 94619638 94619940 + 2 NA intron (NM_180989, intron 5 of 8) AluJo|SINE|Alu 17932 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 354-379 chr5 109563965 109564177 + 2 NA Intergenic (TATC)n|Simple_repeat|Simple_repeat -125295 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 520-279 chr7 49604925 49605417 + 2 NA Intergenic L1PB1|LINE|L1 -168467 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 355-242 chr2 80382631 80382934 + 2 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 69403 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 247-113 chr14 37068272 37068503 + 2 NA intron (NM_001171170, intron 1 of 10) MIRc|SINE|MIR -103639 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 247-83 chr12 37879032 37879247 + 2 NA Intergenic ALR/Alpha|Satellite|centr -437635 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 492-35 chr11 26422467 26422926 + 2 NA intron (NM_031418, intron 1 of 26) intron (NM_031418, intron 1 of 26) -51206 NM_001313727 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 517-64 chr13 24179883 24180301 + 2 NA intron (NM_153023, intron 1 of 11) L1MB8|LINE|L1 17676 NR_031753 100313842 NR_031753 ENSG00000252695 MIR2276 - microRNA 2276 ncRNA 531-111 chr2 75448103 75448488 + 2 NA Intergenic AluSp|SINE|Alu -75773 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 380-120 chr14 52135045 52135261 + 2 NA Intergenic L1PA13|LINE|L1 -66094 NM_007361 22795 Hs.369840 NM_007361 ENSG00000087303 NID2 NID-2 nidogen 2 protein-coding 242-203 chr2 170433901 170434083 + 2 NA intron (NM_001083615, intron 22 of 33) intron (NM_001083615, intron 22 of 33) -83049 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 319-136 chr14 45627737 45627914 + 2 NA Intergenic Intergenic 87777 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 408-130 chr16 50982970 50983278 + 2 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) -34634 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 350-158 chr16 26232430 26232749 + 2 NA Intergenic Intergenic 207352 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 685-16 chr12 14124425 14124843 + 2 NA Intergenic Intergenic -144278 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 221-180 chr3 31238336 31238528 + 2 NA Intergenic Intergenic -76645 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 254-262 chr3 193934553 193934756 + 2 NA Intergenic Intergenic 59584 NR_027764 100128023 Hs.730112 NR_027764 DPPA2P3 - developmental pluripotency associated 2 pseudogene 3 pseudo 348-176 chr16 80480687 80480931 + 2 NA intron (NR_120307, intron 2 of 5) MER58A|DNA|hAT-Charlie -59925 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 539-14 chr1 162617428 162617859 + 2 NA Intergenic L1M4|LINE|L1 -13220 NM_001354983 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 347-315 chr3 111707327 111707634 + 2 NA intron (NM_001185106, intron 1 of 4) L1ME4c|LINE|L1 -25016 NM_001134437 90102 Hs.603252 NM_145753 ENSG00000144824 PHLDB2 LL5b|LL5beta pleckstrin homology like domain family B member 2 protein-coding 792-25 chr15 55556781 55557309 + 2 NA intron (NM_015617, intron 1 of 2) L1PA10|LINE|L1 31300 NM_001330326 26108 Hs.87194 NM_015617 ENSG00000171016 PYGO1 - pygopus family PHD finger 1 protein-coding 257-345 chr6 39375968 39376212 + 2 NA intron (NM_001289020, intron 15 of 21) intron (NM_001289020, intron 15 of 21) -53122 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 268-231 chr22 48015276 48015530 + 2 NA Intergenic L1MC3|LINE|L1 -258961 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 317-549 chrX 96127829 96128125 + 2 NA Intergenic MIR|SINE|MIR 209925 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 609-31 chr14 42491455 42491940 + 2 NA Intergenic Intergenic 884841 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 242-298 chr5 45654180 45654410 + 2 NA intron (NM_021072, intron 1 of 7) intron (NM_021072, intron 1 of 7) 42085 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 239 chr1 38795655 38795791 + 2 NA Intergenic L1ME4b|LINE|L1 64049 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 287-219 chr2 228872788 228873030 + 2 NA Intergenic L1MC5|LINE|L1 -261514 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 384-12 chr1 90878891 90879094 + 2 NA Intergenic L1MB7|LINE|L1 27233 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 475-202 chr4 44565174 44565476 + 2 NA Intergenic L1PREC2|LINE|L1 86316 NM_182592 285525 Hs.596000 NM_182592 ENSG00000177752 YIPF7 FinGER9 Yip1 domain family member 7 protein-coding 358-204 chr2 61652505 61652730 + 2 NA Intergenic MER31-int|LTR|ERV1 -114261 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 227-397 chr9 77706483 77706641 + 2 NA Intergenic MIR|SINE|MIR -58240 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 191-84 chr18 5236142 5236327 + 2 NA TTS (NR_026849) TTS (NR_026849) 1795 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 230-307 chr5 114285436 114285611 + 2 NA Intergenic Intergenic -76547 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 493-48 chr11 70245326 70245698 + 2 NA Intergenic Intergenic -25178 NR_045286 8500 Hs.530749 NM_003626 ENSG00000131626 PPFIA1 LIP.1|LIP1|LIPRIN PTPRF interacting protein alpha 1 protein-coding 289-21 chr1 164521822 164522019 + 2 NA Intergenic Intergenic -37440 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 456-88 chr14 58188960 58189245 + 2 NA Intergenic Intergenic -11047 NM_018477 55860 Hs.509451 NM_018477 ENSG00000131966 ACTR10 ACTR11|Arp10|Arp11|HARP11 actin related protein 10 protein-coding 254-193 chr2 118058998 118059155 + 2 NA Intergenic Intergenic -29342 NM_001321333 51141 Hs.7089 NM_016133 ENSG00000125629 INSIG2 INSIG-2 insulin induced gene 2 protein-coding 263-195 chr2 52333733 52333925 + 2 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -36819 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 206-283 chr9 31527388 31527566 + 2 NA Intergenic Intergenic -145987 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 362-293 chr4 33504655 33504883 + 2 NA Intergenic MER57A-int|LTR|ERV1 535124 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 171-93 chr4 75400038 75400202 + 2 NA Intergenic Intergenic 46044 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 190-147 chr5 61815057 61815217 + 2 NA Intergenic Intergenic -79439 NR_105000 100506526 Hs.662277 NR_105000 C5orf64-AS1 - C5orf64 antisense RNA 1 ncRNA 398-230 chr4 12477433 12477809 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 254170 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 134-33 chr15 59471312 59471380 + 2 NA intron (NM_152450, intron 3 of 8) L1M4|LINE|L1 33160 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 357-61 chr11 30895908 30896219 + 2 NA intron (NM_001367979, intron 34 of 38) intron (NM_001367979, intron 34 of 38) 96623 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 345-402 chr5 4980449 4980780 + 2 NA Intergenic Intergenic -53745 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 256-427 chr8 101450865 101451057 + 2 NA Intergenic Intergenic -41478 NM_001330593 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 247-163 chr18 5828668 5828877 + 2 NA Intergenic Intergenic -11923 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 468-75 chr14 31873198 31873543 + 2 NA Intergenic Intergenic -71483 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 310-3 chr1 43500860 43501124 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -25045 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 329-273 chr2 57468087 57468381 + 2 NA Intergenic Intergenic -439417 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 425-228 chr5 38067182 38067481 + 2 NA intron (NR_147009, intron 2 of 2) L1ME4a|LINE|L1 41634 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 247-146 chr16 48957268 48957463 + 2 NA Intergenic L1PB1|LINE|L1 324473 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 373-6 chr1 41986631 41986924 + 2 NA intron (NR_038261, intron 1 of 3) intron (NR_038261, intron 1 of 3) 49157 NR_038261 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 537-176 chr4 74220516 74220887 + 2 NA intron (NM_001144978, intron 5 of 7) L1M8|LINE|L1 62583 NR_147097 441024 Hs.721011 NM_001004346 ENSG00000163738 MTHFD2L - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like protein-coding 223-191 chr21 28496067 28496189 + 2 NA Intergenic Intergenic -43190 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 348-430 chr5 136474172 136474515 + 2 NA Intergenic L1PA16|LINE|L1 -108867 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 302-15 chr1 114927876 114928048 + 2 NA intron (NM_001282542, intron 23 of 30) AluJb|SINE|Alu 73099 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 187-62 chr16 66408953 66409126 + 2 NA intron (NR_046242, intron 1 of 1) MIRb|SINE|MIR 515 NR_046242 100505865 Hs.314372 NR_046242 LINC00920 - long intergenic non-protein coding RNA 920 ncRNA 288-252 chr3 21196788 21197008 + 2 NA Intergenic AluSp|SINE|Alu -208828 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 338-512 chr7 92198421 92198639 + 2 NA TTS (NM_001350697) TTS (NM_001350697) 5568 NR_031616 100302218 NR_031616 ENSG00000221520 MIR1285-1 MIRN1285-1|hsa-mir-1285-1 microRNA 1285-1 ncRNA 401-322 chr8 78546990 78547245 + 2 NA intron (NR_125389, intron 2 of 2) AluSc|SINE|Alu 11386 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 189-44 chr12 114116760 114116939 + 2 NA Intergenic Intergenic 124921 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 322-302 chr21 29199288 29199461 + 2 NA intron (NR_027072, intron 1 of 1) MER4B|LTR|ERV1 5880 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 353-357 chr4 30330443 30330790 + 2 NA Intergenic Intergenic -389753 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 383-107 chr14 47838502 47838863 + 2 NA Intergenic MLT2C1|LTR|ERVL -43668 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 313-383 chr4 61024913 61025213 + 2 NA Intergenic L1M5|LINE|L1 102444 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 248-370 chr7 34775513 34775710 + 2 NA intron (NR_015356, intron 1 of 4) L1M1|LINE|L1 -17339 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 276-122 chr13 40974380 40974548 + 2 NA intron (NM_001370329, intron 2 of 9) MIRb|SINE|MIR 7818 NM_001145353 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 270-300 chr5 63033914 63034079 + 2 NA Intergenic Intergenic 455177 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 254-355 chr6 115872008 115872230 + 2 NA Intergenic L1ME4a|LINE|L1 -166612 NR_027338 728402 Hs.729953 NR_027338 TPI1P3 - triosephosphate isomerase 1 pseudogene 3 pseudo 441-187 chr4 186869293 186869607 + 2 NA Intergenic L1MEd|LINE|L1 -145594 NM_005245 2195 Hs.481371 NM_005245 ENSG00000083857 FAT1 CDHF7|CDHR8|FAT|ME5|hFat1 FAT atypical cadherin 1 protein-coding 296-256 chr2 206875986 206876184 + 2 NA Intergenic Intergenic -63433 NM_173077 130749 Hs.684103 NM_173077 ENSG00000144410 CPO - carboxypeptidase O protein-coding 358-343 chr4 111163204 111163486 + 2 NA Intergenic AluJr|SINE|Alu -302698 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 180-83 chr2 104197751 104197853 + 2 NA Intergenic Intergenic 210530 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 239-13 chr1 178700871 178701025 + 2 NA Intergenic L1ME3E|LINE|L1 23199 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 269-21 chr1 164011743 164011879 + 2 NA Intergenic L1MB1|LINE|L1 -547549 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 240-89 chr11 113391885 113392105 + 2 NA intron (NM_178510, intron 1 of 7) L2a|LINE|L2 4216 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 583-152 chr7 64281402 64281756 + 2 NA Intergenic MER11C|LTR|ERVK -32294 NM_001294255 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 252-183 chr2 45747748 45747949 + 2 NA intron (NM_005400, intron 1 of 14) L1MB2|LINE|L1 96173 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 286-231 chr2 202091968 202092154 + 2 NA intron (NM_001277372, intron 3 of 23) intron (NM_001277372, intron 3 of 23) 18806 NM_001367720 100652824 Hs.686898 NM_001080445 ENSG00000182329 KIAA2012 - KIAA2012 protein-coding 323-431 chr5 123727501 123727732 + 2 NA Intergenic L1MA2|LINE|L1 182199 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 506-159 chr2 171638825 171639283 + 2 NA Intergenic AluSx|SINE|Alu -48415 NM_001271786 1781 Hs.546250 NM_001378 ENSG00000077380 DYNC1I2 DIC74|DNCI2|IC2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 429-107 chr16 31764908 31765244 + 2 NA Intergenic L1P1|LINE|L1 43777 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 266-75 chr11 113631310 113631522 + 2 NA Intergenic MamRep605|LTR?|LTR? 74892 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 444-167 chr4 26121527 26121874 + 2 NA Intergenic Intergenic -198010 NM_005349 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 224-271 chr5 180444977 180445184 + 2 NA Intergenic L1M3e|LINE|L1 -49299 NR_163438 57472 Hs.608380 NM_015455 ENSG00000113300 CNOT6 CCR4|Ccr4a CCR4-NOT transcription complex subunit 6 protein-coding 425-85 chr14 64484740 64485077 + 2 NA 3' UTR (NM_001354684, exon 4 of 4) 3' UTR (NM_001354684, exon 4 of 4) 13084 NM_001354687 7597 Hs.654571 NM_006977 ENSG00000089775 ZBTB25 C14orf51|KUP|ZNF46 zinc finger and BTB domain containing 25 protein-coding 432-51 chr11 98956864 98957258 + 2 NA Intergenic Intergenic -63888 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 452-132 chr2 114420059 114420335 + 2 NA Intergenic (CTAC)n|Simple_repeat|Simple_repeat -22444 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 350-60 chr10 111614501 111614693 + 2 NA Intergenic MIRb|SINE|MIR 500306 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 680-43 chr15 96987040 96987672 + 2 NA Intergenic L1MCa|LINE|L1 203921 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 237-390 chr8 124132293 124132481 + 2 NA intron (NR_103547, intron 1 of 4) L1PA15|LINE|L1 39135 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 278-4 chr1 68792366 68792609 + 2 NA Intergenic Intergenic -263411 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 322-339 chr3 100179346 100179515 + 2 NA TTS (NM_001167924) TTS (NM_001167924) -6394 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 569-186 chr9 27866699 27867105 + 2 NA Intergenic Intergenic -293036 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 495-49 chr12 76287299 76287684 + 2 NA intron (NR_146531, intron 1 of 3) MIR3|SINE|MIR 27608 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 369-112 chr14 54011539 54011878 + 2 NA Intergenic MamRep1151|LTR?|LTR? -54817 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 277-320 chr5 53368199 53368447 + 2 NA Intergenic Intergenic -112306 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 509-41 chr11 55308781 55309201 + 2 NA Intergenic Intergenic -10759 NR_038174 440041 Hs.558954 NR_038174 TRIM51HP - tripartite motif-containing 51H, pseudogene pseudo 472-227 chr4 52648948 52649360 + 2 NA intron (NM_001286767, intron 1 of 8) intron (NM_001286767, intron 1 of 8) 7385 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 410-155 chr2 179381645 179382023 + 2 NA Intergenic Intergenic -117002 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 357-266 chr3 41668118 41668430 + 2 NA intron (NR_136342, intron 27 of 34) intron (NR_136342, intron 27 of 34) 293829 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 362-3 chr1 29565495 29565837 + 2 NA Intergenic Intergenic -215552 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 170-14 chr1 247258602 247258732 + 2 NA Intergenic Intergenic 2595 NR_160309 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 433-271 chr8 33192744 33193124 + 2 NA Intergenic Intergenic 280212 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 271-280 chr3 139899562 139899801 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -35504 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 307-448 chr7 46263787 46263986 + 2 NA Intergenic Intergenic -342614 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 289-384 chr5 116963801 116964049 + 2 NA Intergenic Intergenic -201716 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 331-568 chrX 66773615 66773891 + 2 NA Intergenic L1MA1|LINE|L1 -134455 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 370-201 chr19 28353011 28353378 + 2 NA Intergenic L1M3e|LINE|L1 -253494 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 434-185 chr3 84839679 84840067 + 2 NA intron (NR_033860, intron 8 of 20) intron (NR_033860, intron 8 of 20) 29702 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 763-47 chr3 197239193 197239897 + 2 NA intron (NM_001366216, intron 4 of 23) L1MDa|LINE|L1 54403 NR_039960 100616216 NR_039960 ENSG00000265850 MIR4797 - microRNA 4797 ncRNA 370-185 chr17 73041169 73041461 + 2 NA intron (NM_001352692, intron 3 of 9) HAL1|LINE|L1 51373 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 319-107 chr12 24433994 24434167 + 2 NA intron (NM_152989, intron 1 of 17) L2|LINE|L2 128411 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 244-116 chr16 26988052 26988252 + 2 NA Intergenic MIRb|SINE|MIR -78775 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 450-299 chr8 79701150 79701460 + 2 NA Intergenic Intergenic 65170 NM_001282851 23462 Hs.234434 NM_012258 ENSG00000164683 HEY1 BHLHb31|CHF2|HERP2|HESR1|HRT-1|NERP2|OAF1|hHRT1 hes related family bHLH transcription factor with YRPW motif 1 protein-coding 444-108 chr18 78670008 78670362 + 2 NA Intergenic Intergenic -310090 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 260-181 chr18 12846436 12846609 + 2 NA intron (NM_080423, intron 2 of 8) L1MC4|LINE|L1 -5560 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 468-331 chr8 137588923 137589307 + 2 NA Intergenic MLT2C2|LTR|ERVL -175527 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 254-254 chr3 121393057 121393226 + 2 NA intron (NM_001348343, intron 23 of 27) L1PB4|LINE|L1 152847 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 139-55 chr3 137579704 137579798 + 2 NA Intergenic Intergenic -184564 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 376-125 chr15 93751743 93752007 + 2 NA Intergenic L1PA11|LINE|L1 -104685 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 340-524 chr8 49471553 49471767 + 2 NA Intergenic MIR|SINE|MIR 40520 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 280-193 chr2 52049219 52049406 + 2 NA intron (NR_135237, intron 7 of 10) L1M4c|LINE|L1 -321336 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 838-13 chr14 51830627 51831201 + 2 NA Intergenic L2a|LINE|L2 -29698 NM_001243774 54331 Hs.187772 NM_053064 ENSG00000186469 GNG2 - G protein subunit gamma 2 protein-coding 213-141 chr2 89839663 89839819 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -201834 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 631-107 chr5 151404786 151405258 + 2 NA Intergenic L1PA16|LINE|L1 -32024 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 194-121 chr3 71222844 71223000 + 2 NA intron (NR_146142, intron 5 of 19) intron (NR_146142, intron 5 of 19) 22155 NM_001244814 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 459-69 chr13 38249850 38250179 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 -99837 NM_001286704 51569 Hs.643655 NM_016617 ENSG00000120686 UFM1 BM-002|C13orf20|HLD14 ubiquitin fold modifier 1 protein-coding 377-35 chr10 18849661 18849882 + 2 NA Intergenic L1M1|LINE|L1 190340 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 558-49 chr13 113475274 113475815 + 2 NA intron (NM_001014283, intron 3 of 6) Tigger3c|DNA|TcMar-Tigger 15167 NM_001014283 55208 Hs.682987 NM_018185 ENSG00000150401 DCUN1D2 C13orf17 defective in cullin neddylation 1 domain containing 2 protein-coding 315-228 chr2 31703122 31703382 + 2 NA Intergenic L1M3b|LINE|L1 100728 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 386-342 chr8 22375482 22375720 + 2 NA intron (NM_001135153, intron 1 of 8) AluSx|SINE|Alu 8063 NM_001135153 23516 Hs.491232 NM_015359 ENSG00000104635 SLC39A14 HCIN|HMNDYT2|LZT-Hs4|NET34|ZIP14|cig19 solute carrier family 39 member 14 protein-coding 300-138 chr16 13283350 13283598 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 381876 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 476-57 chr11 130504725 130505042 + 2 NA Intergenic L1MD1|LINE|L1 55909 NM_139055 170689 Hs.534221 NM_139055 ENSG00000166106 ADAMTS15 - ADAM metallopeptidase with thrombospondin type 1 motif 15 protein-coding 524-43 chr11 132513856 132514261 + 2 NA intron (NM_002545, intron 3 of 6) intron (NM_002545, intron 3 of 6) 229756 NR_046820 100874281 NR_046820 NTM-IT NTM-IT3 NTM intronic transcript ncRNA 339-163 chr14 67106180 67106448 + 2 NA intron (NM_001024218, intron 12 of 21) L1M2a|LINE|L1 -83126 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 484-35 chr10 115859843 115860169 + 2 NA intron (NM_207303, intron 28 of 28) intron (NM_207303, intron 28 of 28) 334783 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 362-307 chr4 70099985 70100213 + 2 NA Intergenic Intergenic 32713 NR_003720 286828 Hs.631945 NR_003720 ENSG00000234124 CSN1S2AP CSN1S2A casein alpha s2 like A, pseudogene pseudo 368-20 chr1 112189304 112189580 + 2 NA Intergenic L2c|LINE|L2 198906 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 431-317 chr9 71150914 71151262 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -29467 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 328-613 chr9 111530574 111530758 + 2 NA intron (NM_133464, intron 2 of 5) MER21C|LTR|ERVL 5487 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 373-214 chr2 151332019 151332371 + 2 NA Intergenic FLAM_C|SINE|Alu -25397 NM_007115 7130 Hs.437322 NM_007115 ENSG00000123610 TNFAIP6 TSG-6|TSG6 TNF alpha induced protein 6 protein-coding 239-312 chr5 53772472 53772658 + 2 NA Intergenic L1M1|LINE|L1 47117 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 455-65 chr13 75121319 75121623 + 2 NA Intergenic Intergenic 118910 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 359-331 chr3 107984362 107984565 + 2 NA Intergenic MER21B|LTR|ERVL 101258 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 357-57 chr11 19544881 19545079 + 2 NA intron (NM_001111018, intron 1 of 37) MIRb|SINE|MIR -20902 NR_033989 399876 Hs.132600 NR_033989 ENSG00000254622 NAV2-AS4 - NAV2 antisense RNA 4 ncRNA 221-145 chr2 114211979 114212171 + 2 NA Intergenic Intergenic -230566 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 497-67 chr13 28917656 28918004 + 2 NA intron (NM_001366651, intron 2 of 14) L1MA3|LINE|L1 97491 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 311-53 chr10 57256148 57256340 + 2 NA Intergenic L1PB1|LINE|L1 48315 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 212-308 chr7 80460012 80460187 + 2 NA intron (NM_001102386, intron 7 of 7) L1MC2|LINE|L1 51965 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 339-251 chr2 51135879 51136108 + 2 NA intron (NR_135237, intron 2 of 10) THE1B|LTR|ERVL-MaLR 103392 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 209-343 chr9 18745660 18745848 + 2 NA intron (NM_001040272, intron 15 of 28) L1MC4|LINE|L1 172448 NR_036107 100422869 NR_036107 ENSG00000264638 MIR3152 - microRNA 3152 ncRNA 347-499 chr8 59398892 59399099 + 2 NA Intergenic L1MB3|LINE|L1 279785 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 211-148 chr2 129393155 129393284 + 2 NA Intergenic L1MA6|LINE|L1 -119328 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 246-426 chr8 139271181 139271415 + 2 NA Intergenic Intergenic -357257 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 252-59 chr11 21012890 21013107 + 2 NA intron (NM_201551, intron 12 of 18) LTR8|LTR|ERV1 343412 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 242-145 chr18 7743622 7743774 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 176382 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 298-98 chr12 83502798 83503046 + 2 NA Intergenic MIRb|SINE|MIR 815767 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 313-295 chr2 226599410 226599663 + 2 NA Intergenic Intergenic 59257 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 287-106 chr12 9353684 9353879 + 2 NA Intergenic Intergenic -13683 NR_120479 101930452 Hs.734183 NR_120479 ENSG00000260423 LINC02367 - long intergenic non-protein coding RNA 2367 ncRNA 241-249 chr3 142383158 142383344 + 2 NA intron (NM_019001, intron 22 of 41) intron (NM_019001, intron 22 of 41) 64786 NM_019001 54464 Hs.435103 NM_019001 ENSG00000114127 XRN1 SEP1 5'-3' exoribonuclease 1 protein-coding 234-62 chr11 84749698 84749863 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -28838 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 441-34 chr10 116365532 116365829 + 2 NA intron (NM_198515, intron 7 of 8) intron (NM_198515, intron 7 of 8) 41232 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 353-273 chr20 3069001 3069197 + 2 NA Intergenic Intergenic -2521 NM_000915 5020 Hs.113216 NM_000915 ENSG00000101405 OXT OT|OT-NPI|OXT-NPI oxytocin/neurophysin I prepropeptide protein-coding 446-46 chr10 64236927 64237199 + 2 NA Intergenic Intergenic -588465 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 434-309 chr9 22072614 22073031 + 2 NA intron (NR_003529, intron 12 of 18) MIRc|SINE|MIR -63509 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 246-318 chr5 25123557 25123759 + 2 NA Intergenic Intergenic 66998 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 422-190 chr3 89499200 89499472 + 2 NA Intergenic Intergenic 391715 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 353-227 chr19 44029866 44030088 + 2 NA intron (NM_001129996, intron 3 of 3) intron (NM_001129996, intron 3 of 3) 4598 NM_001129996 7673 Hs.279840 NM_013360 ENSG00000159885 ZNF222 - zinc finger protein 222 protein-coding 567-155 chr6 40186879 40187375 + 2 NA Intergenic MER34C_|LTR|ERV1 168879 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 316-589 chr9 94051555 94051818 + 2 NA intron (NM_177995, intron 1 of 9) L1MC3|LINE|L1 20873 NM_177995 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 414-317 chr8 28040344 28040677 + 2 NA intron (NM_001010906, intron 13 of 18) MIRc|SINE|MIR 43426 NM_001010906 389643 Hs.370129 NM_001010906 ENSG00000189233 NUGGC C8orf80|HMFN0672|SLIP-GC nuclear GTPase, germinal center associated protein-coding 607-31 chr12 46575018 46575446 + 2 NA intron (NR_125377, intron 3 of 3) intron (NR_125377, intron 3 of 3) 191125 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 210-158 chr21 20268860 20269018 + 2 NA Intergenic Intergenic -10254 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 392-198 chr3 26739404 26739689 + 2 NA Intergenic Intergenic 44989 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 343-112 chr12 103290029 103290345 + 2 NA intron (NR_103526, intron 4 of 10) intron (NR_103526, intron 4 of 10) 138345 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 314-134 chr12 95804278 95804461 + 2 NA intron (NR_135016, intron 1 of 1) intron (NR_135016, intron 1 of 1) 1272 NR_135016 105369920 Hs.145556 NR_135016 ENSG00000258292 LINC02410 - long intergenic non-protein coding RNA 2410 ncRNA 296-229 chr2 100164055 100164228 + 2 NA Intergenic L1MEg|LINE|L1 -21551 NM_002285 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 318-44 chr1 227578048 227578276 + 2 NA intron (NM_001367909, intron 1 of 3) L1PA13|LINE|L1 14606 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 153-93 chr7 56711372 56711464 + 2 NA Intergenic (ATTAAT)n|Simple_repeat|Simple_repeat 101318 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 556-38 chr11 88683894 88684398 + 2 NA intron (NM_001143831, intron 2 of 8) L2a|LINE|L2 179570 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 279-162 chr2 8800676 8800890 + 2 NA intron (NM_001348732, intron 8 of 28) intron (NM_001348732, intron 8 of 28) 36830 NM_020738 57498 Hs.9873 NM_020738 ENSG00000134313 KIDINS220 ARMS|SINO kinase D interacting substrate 220 protein-coding 239-351 chr6 53290105 53290298 + 2 NA intron (NM_001242828, intron 3 of 8) intron (NM_001242828, intron 3 of 8) 13208 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 202-128 chr2 120407956 120408110 + 2 NA Intergenic L1M5|LINE|L1 58316 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 334-388 chr4 103355333 103355535 + 2 NA Intergenic L1MEf|LINE|L1 -69608 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 353-394 chr4 176239521 176239810 + 2 NA intron (NM_080874, intron 1 of 6) intron (NM_080874, intron 1 of 6) 29557 NM_080874 140458 Hs.591712 NM_080874 ENSG00000164122 ASB5 ASB-5 ankyrin repeat and SOCS box containing 5 protein-coding 331-330 chr22 31013461 31013643 + 2 NA Intergenic AluSx1|SINE|Alu 44341 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 349-102 chr11 80304321 80304521 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 458382 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 435-232 chr8 21323729 21323981 + 2 NA Intergenic Intergenic 25616 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 443-202 chr3 89975522 89975818 + 2 NA Intergenic Intergenic 868049 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 448-57 chr12 16920872 16921134 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -67744 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 190-187 chr8 136088492 136088589 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat -442258 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 306-393 chr5 41550173 41550345 + 2 NA Intergenic L1PREC2|LINE|L1 -39658 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 188-195 chr7 106821492 106821656 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -43708 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 245-13 chr1 147625071 147625237 + 2 NA 3' UTR (NM_004326, exon 10 of 10) 3' UTR (NM_004326, exon 10 of 10) 45370 NR_136635 51205 Hs.562154 NM_016361 ENSG00000162836 ACP6 ACPL1|LPAP|PACPL1 acid phosphatase 6, lysophosphatidic protein-coding 424-157 chr20 12861682 12862043 + 2 NA Intergenic Intergenic 75101 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 314-221 chr17 33401928 33402114 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -109033 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 276-120 chr12 132984405 132984643 + 2 NA Intergenic L1MA3|LINE|L1 -1843 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 119-31 chr2 77320735 77320819 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 201599 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 341-264 chr2 128900373 128900606 + 2 NA Intergenic Intergenic 35889 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 495-59 chr13 83657996 83658414 + 2 NA Intergenic Intergenic 224188 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 307-124 chr13 102939457 102939752 + 2 NA Intergenic L1MC3|LINE|L1 59505 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 333-141 chr14 33041385 33041669 + 2 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 102648 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 226-72 chr12 41601524 41601715 + 2 NA Intergenic L1MC4|LINE|L1 -162570 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 417-308 chr9 118270330 118270713 + 2 NA Intergenic Intergenic -409150 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 214-348 chr9 14406135 14406280 + 2 NA intron (NM_001369458, intron 1 of 11) MLT1J1-int|LTR|ERVL-MaLR -7224 NM_001190738 4781 Hs.644095 NM_005596 ENSG00000147862 NFIB CTF|HMGIC/NFIB|MACID|NF-I/B|NF1-B|NFI-B|NFI-RED|NFIB2|NFIB3 nuclear factor I B protein-coding 317-169 chr15 82859592 82859880 + 2 NA intron (NM_199330, intron 4 of 8) intron (NM_199330, intron 4 of 8) 50108 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WASP homolog associated with actin, golgi membranes and microtubules protein-coding 528-199 chr5 30829475 30829849 + 2 NA Intergenic MIRc|SINE|MIR -364024 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 367-417 chr7 38168905 38169196 + 2 NA Intergenic L1ME3G|LINE|L1 -9195 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 339-374 chr3 97527670 97527920 + 2 NA intron (NM_001080448, intron 10 of 17) LTR53|LTR|ERVL 88188 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 874-13 chr2 188521304 188522155 + 2 NA intron (NM_001252669, intron 4 of 8) THE1B|LTR|ERVL-MaLR 224237 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 444-20 chr10 28030788 28031137 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -31883 NM_018076 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 391-85 chr12 132803341 132803730 + 2 NA intron (NM_001172557, intron 7 of 15) intron (NM_001172557, intron 7 of 15) 24854 NM_005895 2802 Hs.507333 NM_005895 ENSG00000090615 GOLGA3 GCP170|MEA-2 golgin A3 protein-coding 254-144 chr16 80374985 80375213 + 2 NA intron (NR_120307, intron 2 of 5) intron (NR_120307, intron 2 of 5) -165635 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 324-24 chr1 159664412 159664709 + 2 NA Intergenic L1MA4|LINE|L1 50029 NM_001329058 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 388-92 chr12 131089284 131089619 + 2 NA intron (NM_198827, intron 15 of 24) intron (NM_198827, intron 15 of 24) -75560 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 298-212 chr2 54927870 54928052 + 2 NA intron (NM_001039753, intron 25 of 40) intron (NM_001039753, intron 25 of 40) 82311 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 348-240 chr2 157436858 157437180 + 2 NA intron (NM_004288, intron 1 of 7) L1MA5A|LINE|L1 7070 NM_004288 9595 Hs.270 NM_004288 ENSG00000115165 CYTIP B3-1|CASP|CYBR|CYTHIP|HE|PSCDBP cytohesin 1 interacting protein protein-coding 423-296 chr8 88522582 88522921 + 2 NA Intergenic Intergenic -195268 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 290-425 chr7 57289171 57289330 + 2 NA Intergenic (ATCT)n|Simple_repeat|Simple_repeat -67076 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 341-328 chr3 29042358 29042561 + 2 NA Intergenic L1MDa|LINE|L1 238480 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 472-112 chr16 64372019 64372418 + 2 NA Intergenic Intergenic 749845 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 382-445 chrX 64946367 64946566 + 2 NA intron (NM_001178032, intron 1 of 4) L1P3|LINE|L1 29984 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 210-293 chr8 113052330 113052487 + 2 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 324744 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 249-237 chr20 20555069 20555260 + 2 NA intron (NM_020343, intron 23 of 39) L1M4|LINE|L1 157480 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 557-153 chr5 15958875 15959348 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 23929 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 257-350 chr6 61785809 61785996 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 211772 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 484-94 chr17 52383741 52384020 + 2 NA Intergenic Intergenic -6642 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 232-152 chr19 42601267 42601432 + 2 NA intron (NR_073180, intron 2 of 2) MLT1A|LTR|ERVL-MaLR -6425 NM_001816 1088 Hs.41 NM_001816 ENSG00000124469 CEACAM8 CD66b|CD67|CGM6|NCA-95 carcinoembryonic antigen related cell adhesion molecule 8 protein-coding 149-107 chr9 105783153 105783246 + 2 NA Intergenic L1PA16|LINE|L1 88658 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 259-27 chr1 212013497 212013716 + 2 NA intron (NM_015434, intron 4 of 19) Tigger3b|DNA|TcMar-Tigger -21947 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 262-2 chr1 12748943 12749144 + 2 NA intron (NM_001330361, intron 1 of 2) L1MB3|LINE|L1 2843 NM_001330361 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 503-213 chr4 63632463 63632885 + 2 NA Intergenic Intergenic 776776 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 216-130 chr16 77324684 77324841 + 2 NA intron (NM_199355, intron 13 of 22) L3|LINE|CR1 110272 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 393-124 chr17 9414370 9414731 + 2 NA intron (NM_004853, intron 6 of 7) MER5C1|DNA|hAT-Charlie 161270 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 197-148 chr4 28579457 28579633 + 2 NA Intergenic Intergenic -240037 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 187-81 chr2 116105461 116105616 + 2 NA Intergenic Intergenic 761723 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 347-469 chr7 50327350 50327560 + 2 NA intron (NM_001220771, intron 1 of 3) intron (NM_001220771, intron 1 of 3) 8407 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 466-280 chr8 131875363 131875784 + 2 NA Intergenic MER67C|LTR|ERV1 -28520 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 480-266 chr6 165568943 165569262 + 2 NA intron (NM_001130690, intron 1 of 21) MER33|DNA|hAT-Charlie 92998 NM_001130690 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 411-164 chr20 52733435 52733785 + 2 NA Intergenic AluSz|SINE|Alu 112772 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 316-186 chr15 69516497 69516707 + 2 NA Intergenic L1MB5|LINE|L1 -45118 NR_026979 145837 Hs.410126 NR_026979 DRAIC - downregulated RNA in cancer, inhibitor of cell invasion and migration ncRNA 371-103 chr14 38755625 38755978 + 2 NA intron (NR_039982, intron 4 of 4) HAL1b|LINE|L1 -126795 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 497-115 chr2 34613057 34613400 + 2 NA Intergenic L1ME4a|LINE|L1 -64329 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 468-188 chr3 6328039 6328494 + 2 NA Intergenic MIRb|SINE|MIR 477183 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 201-60 chr12 40769261 40769376 + 2 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) -58620 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 276-131 chr13 83372021 83372196 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 510285 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 415-165 chr22 34026709 34027031 + 2 NA Intergenic Intergenic -103982 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 469-76 chr13 49668231 49668601 + 2 NA intron (NR_103803, intron 1 of 2) AluY|SINE|Alu 23070 NM_032565 84650 Hs.433278 NM_032565 ENSG00000123179 EBPL EBRP EBP like protein-coding 446-257 chr5 174871832 174872086 + 2 NA Intergenic MER94|DNA|hAT-Blackjack 120225 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 296-120 chr13 68596305 68596494 + 2 NA Intergenic Intergenic 288926 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 428-304 chr8 109026045 109026354 + 2 NA Intergenic Intergenic -60429 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 181-3 chr1 52901642 52901775 + 2 NA intron (NM_001319958, intron 7 of 9) intron (NM_001319958, intron 7 of 9) 20032 NM_018281 55268 Hs.476319 NM_018281 ENSG00000121310 ECHDC2 - enoyl-CoA hydratase domain containing 2 protein-coding 310-213 chr19 34810839 34811128 + 2 NA Intergenic L1ME3B|LINE|L1 21886 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 677-82 chr8 21917089 21917635 + 2 NA Intergenic L2a|LINE|L2 -2300 NR_156173 23039 Hs.172685 NM_015024 ENSG00000130227 XPO7 EXP7|RANBP16 exportin 7 protein-coding 272-216 chr2 146613668 146613849 + 2 NA Intergenic L1MA9|LINE|L1 26701 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 325-286 chr2 150900001 150900300 + 2 NA Intergenic Intergenic 271253 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 372-90 chr11 114474721 114474972 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger 35379 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 272-217 chr2 152940663 152940842 + 2 NA Intergenic L1MC4|LINE|L1 222115 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 307-88 chr11 96512262 96512481 + 2 NA intron (NR_135097, intron 3 of 3) L1MC4|LINE|L1 3946 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 300-359 chr5 53512356 53512575 + 2 NA Intergenic L1M1|LINE|L1 31836 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 369-265 chr3 56942177 56942535 + 2 NA intron (NR_046572, intron 2 of 2) Tigger1|DNA|TcMar-Tigger 2316 NR_046572 100874200 Hs.549631 NR_046572 ENSG00000240198 ARHGEF3-AS1 - ARHGEF3 antisense RNA 1 ncRNA 348-565 chrX 10809902 10810218 + 2 NA intron (NM_033290, intron 1 of 9) L1MB4|LINE|L1 23623 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 700-34 chr16 54607320 54607727 + 2 NA Intergenic L1MD2|LINE|L1 -236824 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 602-44 chr17 51563796 51564192 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger 128567 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 274-32 chr10 15684417 15684606 + 2 NA intron (NM_001291494, intron 3 of 28) AluJb|SINE|Alu 35411 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 342-228 chr2 39481374 39481595 + 2 NA intron (NR_037875, intron 3 of 5) L1MA7|LINE|L1 44068 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 402-48 chr11 50646535 50646837 + 2 NA Intergenic ALR/Alpha|Satellite|centr 237539 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 370-280 chr21 24887429 24887642 + 2 NA intron (NR_046198, intron 2 of 3) intron (NR_046198, intron 2 of 3) 46985 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 288-114 chr14 46822838 46823013 + 2 NA Intergenic Intergenic -171144 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 199-7 chr1 83492730 83492851 + 2 NA Intergenic Intergenic 46736 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 432-146 chr2 198888022 198888351 + 2 NA Intergenic L1M5|LINE|L1 -513089 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 271-480 chr9 81255697 81255959 + 2 NA Intergenic Intergenic 433707 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 283-92 chr11 131703033 131703226 + 2 NA intron (NM_001352006, intron 2 of 9) L1MA6|LINE|L1 -39573 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 284-306 chr5 7228942 7229164 + 2 NA Intergenic L1ME4a|LINE|L1 40301 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 873-17 chr2 125921903 125922517 + 2 NA Intergenic Intergenic 195775 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 260-466 chrX 46350082 46350283 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -22508 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 361-67 chr11 14003310 14003646 + 2 NA intron (NM_006108, intron 2 of 15) LTR42|LTR|ERVL 40755 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 339-561 chr8 49463526 49463712 + 2 NA Intergenic Intergenic 48561 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 340-505 chr7 45615343 45615642 + 2 NA intron (NM_001281768, intron 4 of 9) AluJr|SINE|Alu 41124 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 241-176 chr2 22644169 22644333 + 2 NA Intergenic Intergenic 107772 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 146-91 chr8 138277477 138277582 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -193984 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 432-39 chr10 108061320 108061671 + 2 NA intron (NR_125760, intron 1 of 4) intron (NR_125760, intron 1 of 4) 7798 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 382-412 chr8 91686086 91686394 + 2 NA Intergenic L1MA9|LINE|L1 331440 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 412-40 chr10 111936256 111936568 + 2 NA Intergenic Intergenic 247353 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 123-31 chr3 25991369 25991434 + 2 NA Intergenic L1M4|LINE|L1 -117706 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 294-39 chr10 55404392 55404613 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -194540 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 584-179 chr9 93893567 93894029 + 2 NA Intergenic MIRb|SINE|MIR 61557 NM_021570 56033 Hs.164960 NM_021570 ENSG00000131668 BARX1 - BARX homeobox 1 protein-coding 560-86 chr2 150822394 150822805 + 2 NA Intergenic Intergenic 193702 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 316-299 chr2 178185123 178185383 + 2 NA Intergenic L1MA8|LINE|L1 -9228 NM_001201482 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 499-253 chr8 5919454 5919937 + 2 NA Intergenic L1MA10|LINE|L1 486853 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 289-105 chr12 52770078 52770280 + 2 NA intron (NM_015848, intron 7 of 8) intron (NM_015848, intron 7 of 8) 7166 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 355-13 chr1 93506293 93506562 + 2 NA intron (NM_001024948, intron 2 of 13) intron (NM_001024948, intron 2 of 13) 58296 NM_001024948 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 305-462 chr6 8463958 8464150 + 2 NA intron (NR_038980, intron 2 of 4) intron (NR_038980, intron 2 of 4) 28431 NR_038979 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 540-35 chr11 18046391 18046832 + 2 NA Intergenic Intergenic -5823 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 599-134 chr8 61134188 61134562 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -153595 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 426-228 chr5 27205018 27205311 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -166578 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 426-188 chr3 115390226 115390520 + 2 NA Intergenic Intergenic -233137 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 407-339 chr8 144585838 144586237 + 2 NA intron (NM_025251, intron 1 of 10) AluSz|SINE|Alu 19658 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 331-196 chr16 73803195 73803450 + 2 NA Intergenic Intergenic 412199 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 382-66 chr11 102554153 102554390 + 2 NA Intergenic L1ME3A|LINE|L1 -23524 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 673-85 chr4 27694183 27694583 + 2 NA Intergenic Intergenic 476904 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 627-86 chr5 27592167 27592731 + 2 NA Intergenic Intergenic 120157 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 410-321 chr8 137389062 137389372 + 2 NA Intergenic L2a|LINE|L2 24371 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 258-438 chrX 65281352 65281568 + 2 NA Intergenic AluSz6|SINE|Alu -207275 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 179-46 chr2 43821121 43821248 + 2 NA intron (NM_022436, intron 10 of 12) intron (NM_022436, intron 10 of 12) 17655 NM_022436 64240 Hs.132992 NM_022436 ENSG00000138075 ABCG5 STSL ATP binding cassette subfamily G member 5 protein-coding 320-361 chr3 124521616 124521793 + 2 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -62954 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 347-298 chr3 44686529 44686850 + 2 NA Intergenic MER65A|LTR|ERV1 -1036 NR_157564 112840933 NR_157564 ZKSCAN7-AS1 - ZKSCAN7 ZNF cluster antisense RNA 1 ncRNA 584-110 chr3 178614588 178615129 + 2 NA intron (NM_001278911, intron 1 of 4) L1MA1|LINE|L1 56008 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 542-187 chr6 39329670 39330151 + 2 NA TTS (NM_145027) TTS (NM_145027) -6942 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 274-165 chr17 63030700 63030860 + 2 NA intron (NM_025185, intron 2 of 25) MLT1L|LTR|ERVL-MaLR 64545 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 295-337 chr4 59357974 59358224 + 2 NA Intergenic L1PA13|LINE|L1 344526 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 265-148 chr18 7813290 7813478 + 2 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 246068 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 644-27 chr17 21928868 21929504 + 2 NA Intergenic (ATGGAATGGA)n|Simple_repeat|Simple_repeat 236663 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 475-201 chr4 37523054 37523520 + 2 NA intron (NM_001104629, intron 1 of 3) L1M1|LINE|L1 -60946 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 314-446 chr5 13075791 13075956 + 2 NA Intergenic Intergenic -42987 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 336-203 chr16 78392381 78392629 + 2 NA intron (NM_001291997, intron 5 of 7) MER1A|DNA|hAT-Charlie 292851 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 289-482 chr9 7313099 7313354 + 2 NA Intergenic (TTAT)n|Simple_repeat|Simple_repeat 486552 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 336-445 chr5 25324178 25324439 + 2 NA Intergenic Intergenic 133355 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 242-7 chr1 77438734 77438918 + 2 NA intron (NM_012093, intron 8 of 13) MER65-int|LTR|ERV1 155739 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 301-219 chr2 114699813 114700037 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 133623 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 476-21 chr10 16161291 16161644 + 2 NA Intergenic Intergenic -275476 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 768 chr1 66669009 66669658 + 2 NA intron (NM_001350218, intron 8 of 22) intron (NM_001350218, intron 8 of 22) 40893 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 352-569 chr9 119757530 119757790 + 2 NA Intergenic L1MB1|LINE|L1 -177400 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 413-320 chr9 6920305 6920617 + 2 NA intron (NR_148680, intron 8 of 21) AluSx1|SINE|Alu 163111 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 440-194 chr5 30090717 30090970 + 2 NA Intergenic Intergenic 210283 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 319-83 chr10 133193673 133193873 + 2 NA intron (NM_152643, intron 9 of 29) L1MDa|LINE|L1 33554 NM_001347864 85442 Hs.530685 NM_152643 ENSG00000171798 KNDC1 C10orf23|RASGEF2|Very-KIND|bB439H18.3|v-KIND kinase non-catalytic C-lobe domain containing 1 protein-coding 521-73 chr13 23298788 23299273 + 2 NA intron (NM_000231, intron 6 of 7) MIRb|SINE|MIR 76478 NM_001278055 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 295-157 chr15 92427967 92428193 + 2 NA intron (NM_001330416, intron 1 of 4) MER113A|DNA|hAT-Charlie 34193 NM_001330416 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 165-81 chr3 89421530 89421690 + 2 NA intron (NM_005233, intron 11 of 16) intron (NM_005233, intron 11 of 16) 313989 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 326-396 chr5 13225675 13225863 + 2 NA Intergenic L1MA2|LINE|L1 -192883 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 310-418 chr5 105357249 105357424 + 2 NA Intergenic L1M5|LINE|L1 257862 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 384-90 chr12 119059240 119059448 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 77803 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 301-266 chr22 28353545 28353789 + 2 NA intron (NM_001145418, intron 2 of 22) L1MB4|LINE|L1 -106202 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 324-333 chr22 34968887 34969121 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 28912 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 392-283 chr6 114864499 114864737 + 2 NA Intergenic Intergenic 779217 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 627-6 chr10 6810057 6810445 + 2 NA intron (NR_038291, intron 2 of 4) L1PA3|LINE|L1 30653 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 411-241 chr5 156474748 156474976 + 2 NA intron (NM_001128209, intron 2 of 7) MIR|SINE|MIR 147698 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 245-290 chr5 115899945 115900089 + 2 NA intron (NR_157085, intron 5 of 6) intron (NR_157085, intron 5 of 6) -56554 NR_157226 107986443 NR_157226 LINCADL LINC-ADAL lincRNA adipogenesis and lipogenesis associated ncRNA 501-100 chr2 53261659 53262032 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -505938 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 522-93 chr15 80439079 80439532 + 2 NA intron (NM_014862, intron 1 of 18) intron (NM_014862, intron 1 of 18) 34923 NM_014862 9915 Hs.459070 NM_014862 ENSG00000172379 ARNT2 WEDAS|bHLHe1 aryl hydrocarbon receptor nuclear translocator 2 protein-coding 321-266 chr19 46549429 46549714 + 2 NA intron (NM_001370550, intron 1 of 2) intron (NM_001370550, intron 1 of 2) 51345 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 408-82 chr12 50570677 50570966 + 2 NA intron (NM_173602, intron 1 of 37) intron (NM_173602, intron 1 of 37) 65836 NM_173602 57609 Hs.505516 NM_020849 ENSG00000066084 DIP2B - disco interacting protein 2 homolog B protein-coding 299-225 chr2 139941509 139941695 + 2 NA Intergenic (TGTA)n|Simple_repeat|Simple_repeat 645083 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 253-274 chr3 148602143 148602323 + 2 NA Intergenic Intergenic -95638 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 297-168 chr17 3419111 3419276 + 2 NA Intergenic L1M7|LINE|L1 -1375 NM_012373 8392 Hs.532689 NM_012373 ENSG00000159961 OR3A3 OR17-137|OR17-16|OR17-201|OR3A6|OR3A7|OR3A8P olfactory receptor family 3 subfamily A member 3 protein-coding 211-132 chr2 6584321 6584507 + 2 NA Intergenic HAL1|LINE|L1 49373 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 284-203 chr2 101180155 101180385 + 2 NA Intergenic Intergenic 28610 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 775-22 chr12 39708979 39709545 + 2 NA intron (NM_001031748, intron 11 of 12) intron (NM_001031748, intron 11 of 12) 83079 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 523-103 chr16 78292150 78292642 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 192742 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 303-500 chr9 108523754 108523972 + 2 NA Intergenic Intergenic 332123 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 169-29 chr12 77769770 77769923 + 2 NA Intergenic Intergenic -61048 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 609-28 chr14 25693764 25694187 + 2 NA Intergenic Intergenic -643678 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 380-360 chr7 32136653 32136980 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) -65380 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 351-92 chr12 67897256 67897537 + 2 NA Intergenic L2a|LINE|L2 -31839 NR_120456 101927922 Hs.450769 NR_120456 ENSG00000255772 LINC01479 HRAT39 long intergenic non-protein coding RNA 1479 ncRNA 423-108 chr18 7884202 7884543 + 2 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 317056 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 326-15 chr1 77244820 77245040 + 2 NA Intergenic MER34B-int|LTR|ERV1 -25500 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 216-100 chr14 66764804 66764922 + 2 NA intron (NM_001024218, intron 2 of 21) intron (NM_001024218, intron 2 of 21) 257456 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 346-133 chr14 47927553 47927834 + 2 NA Intergenic L1PA5|LINE|L1 -132679 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 292-58 chr10 100606534 100606755 + 2 NA Intergenic L1MEd|LINE|L1 70701 NM_017902 55662 Hs.500788 NM_017902 ENSG00000166135 HIF1AN FIH1 hypoxia inducible factor 1 subunit alpha inhibitor protein-coding 169-51 chr18 3258828 3258944 + 2 NA intron (NR_130144, intron 1 of 2) MIRb|SINE|MIR 2932 NR_130144 104968399 Hs.464472 NR_130143 ENSG00000264235 LOC104968399 - uncharacterized LOC104968399 ncRNA 458-142 chr2 156074590 156074969 + 2 NA intron (NR_110250, intron 1 of 3) MER5A|DNA|hAT-Charlie 180152 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 500-169 chr20 52653848 52654261 + 2 NA Intergenic Intergenic 33216 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 557-30 chr11 30271923 30272386 + 2 NA Intergenic (CTTTTT)n|Simple_repeat|Simple_repeat 41140 NM_000510 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 182-54 chr14 62444221 62444338 + 2 NA Intergenic HAL1|LINE|L1 -304306 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 237-224 chr22 44507131 44507354 + 2 NA Intergenic L1MD1|LINE|L1 -9009 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 408-88 chr12 87476311 87476684 + 2 NA Intergenic Intergenic 145758 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 667-6 chr1 165614710 165615315 + 2 NA Intergenic L1PB1|LINE|L1 -16222 NM_004528 4259 Hs.191734 NM_004528 ENSG00000143198 MGST3 GST-III microsomal glutathione S-transferase 3 protein-coding 220-188 chr2 181962761 181962920 + 2 NA intron (NR_048567, intron 1 of 4) HAL1ME|LINE|L1 8599 NR_048567 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 149-92 chr7 11400899 11401033 + 2 NA intron (NM_015204, intron 22 of 26) intron (NM_015204, intron 22 of 26) 427094 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 313-512 chr7 129312917 129313161 + 2 NA intron (NM_001130720, intron 1 of 16) L2a|LINE|L2 -55341 NM_001130723 23382 Hs.600789 NM_015328 ENSG00000158467 AHCYL2 ADOHCYASE3|IRBIT2 adenosylhomocysteinase like 2 protein-coding 247-26 chr1 208563237 208563385 + 2 NA Intergenic L2a|LINE|L2 -165377 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 278-95 chr13 91439535 91439775 + 2 NA intron (NM_004466, intron 1 of 7) L2b|LINE|L2 41034 NM_004466 2262 Hs.655675 NM_004466 ENSG00000179399 GPC5 - glypican 5 protein-coding 307-470 chr8 25570013 25570191 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE 110869 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 171-11 chr1 115412321 115412424 + 2 NA Intergenic Intergenic -74136 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 237-31 chr10 58131221 58131452 + 2 NA Intergenic Intergenic 136558 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 237-400 chr8 136874097 136874292 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 343396 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 655-50 chr19 29388138 29388636 + 2 NA intron (NR_040029, intron 9 of 9) MLT1F1|LTR|ERVL-MaLR 137365 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 341-462 chr6 52203332 52203584 + 2 NA Intergenic L2a|LINE|L2 17083 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 431-122 chr2 15855493 15855826 + 2 NA Intergenic AluSz|SINE|Alu -64740 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 629-6 chr1 97281920 97282515 + 2 NA intron (NR_046590, intron 2 of 4) intron (NR_046590, intron 2 of 4) 186294 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 478-123 chr18 75343752 75344107 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 83774 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 380-38 chr10 39144622 39144921 + 2 NA Intergenic ALR/Alpha|Satellite|centr 448175 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 261-333 chr6 50170988 50171194 + 2 NA Intergenic L1ME2|LINE|L1 -121162 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 302-454 chr8 88958949 88959209 + 2 NA Intergenic Intergenic -631596 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 419-182 chr3 62516650 62516991 + 2 NA intron (NM_003716, intron 14 of 29) intron (NM_003716, intron 14 of 29) -143270 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 316-575 chr9 6779440 6779601 + 2 NA intron (NR_148680, intron 1 of 21) intron (NR_148680, intron 1 of 21) 22170 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 213-94 chr14 80445412 80445562 + 2 NA intron (NR_038355, intron 8 of 8) intron (NR_038355, intron 8 of 8) -214430 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 440-257 chr8 138154375 138154639 + 2 NA intron (NM_015912, intron 12 of 19) L1PA5|LINE|L1 -70962 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 274-346 chr7 18208788 18209035 + 2 NA intron (NM_001321872, intron 2 of 11) intron (NM_001321872, intron 2 of 11) -81181 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 324-267 chr2 95240049 95240228 + 2 NA Intergenic MER31-int|LTR|ERV1 -34311 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 253-253 chr3 53023274 53023433 + 2 NA intron (NM_016329, intron 1 of 20) intron (NM_016329, intron 1 of 20) 22720 NM_016329 51460 Hs.343679 NM_016329 ENSG00000163935 SFMBT1 RU1|SFMBT|hSFMBT Scm like with four mbt domains 1 protein-coding 610-87 chr2 124458061 124458461 + 2 NA intron (NM_130773, intron 6 of 23) (AT)n|Simple_repeat|Simple_repeat 432974 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 184-95 chr2 99872934 99873040 + 2 NA intron (NM_001025108, intron 6 of 23) Charlie1a|DNA|hAT-Charlie 232596 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 410-304 chr8 62045794 62046050 + 2 NA Intergenic L1MC4a|LINE|L1 156083 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 284-324 chr5 71800456 71800616 + 2 NA Intergenic AluJb|SINE|Alu 81261 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 278-154 chr16 87662009 87662231 + 2 NA intron (NM_020655, intron 2 of 4) Charlie4a|DNA|hAT-Charlie 59612 NM_001271604 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 252-245 chr22 48064893 48065070 + 2 NA Intergenic MIR|SINE|MIR -209383 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 532-184 chr4 66137121 66137441 + 2 NA Intergenic Intergenic -139543 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 315-413 chr6 34497139 34497312 + 2 NA intron (NM_020804, intron 1 of 9) AluSx1|SINE|Alu -17647 NM_001199583 29993 Hs.520087 NM_020804 ENSG00000124507 PACSIN1 SDPI protein kinase C and casein kinase substrate in neurons 1 protein-coding 297-141 chr14 87478373 87478657 + 2 NA Intergenic Intergenic 176779 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 437-292 chr9 27940186 27940542 + 2 NA 3' UTR (NM_001258282, exon 7 of 7) 3' UTR (NM_001258282, exon 7 of 7) -366498 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 180-24 chr11 2079087 2079208 + 2 NA Intergenic L1ME2|LINE|L1 55062 NR_030158 619552 NR_030158 ENSG00000207805 MIR483 MIRN483|hsa-mir-483|mir-483 microRNA 483 ncRNA 255-173 chr18 80101522 80101726 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -7638 NM_014913 22850 Hs.131915 NM_014913 ENSG00000101544 ADNP2 ZNF508 ADNP homeobox 2 protein-coding 226-136 chr18 7390699 7390923 + 2 NA Intergenic L2a|LINE|L2 70195 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 351-419 chr6 68084071 68084364 + 2 NA Intergenic MIRb|SINE|MIR 28866 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 573-138 chr5 8301842 8302293 + 2 NA Intergenic MLT2C1|LTR|ERVL 155497 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 319-163 chr15 88030874 88031157 + 2 NA intron (NM_001007156, intron 14 of 15) Tigger17a|DNA|TcMar-Tigger -84747 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 210-241 chr6 1021187 1021383 + 2 NA intron (NR_027116, intron 1 of 3) ERV3-16A3_I-int|LTR|ERVL 80047 NR_027116 285768 Hs.209463 NR_027115 LINC01622 - long intergenic non-protein coding RNA 1622 ncRNA 245-135 chr14 83711469 83711636 + 2 NA Intergenic L2a|LINE|L2 1068920 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 407-297 chr7 54685580 54685925 + 2 NA Intergenic Intergenic 73459 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 288-247 chr22 37468147 37468421 + 2 NA TTS (NM_002405) TTS (NM_002405) 18100 NR_029413 4242 Hs.517603 NM_002405 ENSG00000100060 MFNG - MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase protein-coding 462-180 chr3 79199812 79200207 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -180550 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 244-39 chr10 88277476 88277659 + 2 NA intron (NM_018363, intron 6 of 6) L1ME4a|LINE|L1 305751 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 436-289 chr7 101608154 101608552 + 2 NA Intergenic Intergenic 20943 NM_138403 93408 Hs.247831 NM_138403 ENSG00000106436 MYL10 MYLC2PL|PLRLC myosin light chain 10 protein-coding 283-107 chr12 118776857 118777124 + 2 NA Intergenic L1MC5a|LINE|L1 -15311 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 134-90 chr9 18479882 18479962 + 2 NA intron (NM_052866, intron 1 of 12) intron (NM_052866, intron 1 of 12) 5769 NM_052866 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 352-531 chr8 86005001 86005303 + 2 NA Intergenic Intergenic 64516 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 221-119 chr18 8367889 8368052 + 2 NA promoter-TSS (NR_024419) promoter-TSS (NR_024419) -936 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 727-59 chr4 100138502 100139177 + 2 NA Intergenic L2a|LINE|L2 -51194 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 234-30 chr10 21450483 21450682 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy 46059 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 265-425 chrX 97119670 97119847 + 2 NA intron (NM_007309, intron 21 of 26) L1PBa1|LINE|L1 235850 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 252-431 chr8 114405685 114405833 + 2 NA Intergenic L1MA5|LINE|L1 -968820 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 344-106 chr12 37756495 37756733 + 2 NA Intergenic ALR/Alpha|Satellite|centr -560160 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 220-181 chr2 141959643 141959789 + 2 NA intron (NM_018557, intron 1 of 90) MER33|DNA|hAT-Charlie 171985 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 175-154 chr7 123398768 123398910 + 2 NA Intergenic Intergenic 134109 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 363-446 chr8 90591658 90591896 + 2 NA TTS (NR_104062) TTS (NR_104062) 14286 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 121-19 chr18 25580204 25580278 + 2 NA Intergenic L1MA9|LINE|L1 -228075 NM_001308225 25925 Hs.116935 NM_015461 ENSG00000198795 ZNF521 EHZF|Evi3 zinc finger protein 521 protein-coding 346-467 chr7 61946144 61946454 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1357757 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 393-246 chr4 96916151 96916478 + 2 NA Intergenic Intergenic -450612 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 434-292 chr8 123132975 123133272 + 2 NA intron (NM_001363154, intron 15 of 18) intron (NM_001363154, intron 15 of 18) -45924 NM_207006 84985 Hs.379821 NM_032899 ENSG00000147689 FAM83A BJ-TSA-9 family with sequence similarity 83 member A protein-coding 403-11 chr1 147438733 147439002 + 2 NA intron (NR_038423, intron 3 of 3) L1MCc|LINE|L1 79008 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 382-306 chr4 107702921 107703194 + 2 NA intron (NM_005443, intron 1 of 11) L1MA8|LINE|L1 17177 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 348-554 chr9 71028025 71028297 + 2 NA intron (NM_001366143, intron 1 of 25) L1PA13|LINE|L1 93460 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 247-96 chr12 107347786 107347986 + 2 NA intron (NM_001347944, intron 1 of 14) intron (NM_001347944, intron 1 of 14) 27298 NM_001347944 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 388-330 chr7 88174528 88174875 + 2 NA intron (NM_001324421, intron 26 of 28) intron (NM_001324421, intron 26 of 28) -41959 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 276-78 chr11 37387916 37388074 + 2 NA Intergenic L2b|LINE|L2 -550606 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 403-174 chr2 234612336 234612606 + 2 NA Intergenic L1ME3C|LINE|L1 -70197 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 385-97 chr14 60513785 60514048 + 2 NA Intergenic Intergenic 4770 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 367-427 chr7 104455839 104456154 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 127340 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 311-468 chr7 37825323 37825509 + 2 NA Intergenic Intergenic -23181 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 302-320 chr4 54976602 54976831 + 2 NA Intergenic L1MA2|LINE|L1 148879 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 193-95 chr2 14935396 14935543 + 2 NA Intergenic HAL1ME|LINE|L1 302752 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 372-62 chr10 128311201 128311446 + 2 NA intron (NR_120619, intron 3 of 5) intron (NR_120619, intron 3 of 5) 25373 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 347-131 chr14 58690225 58690498 + 2 NA Intergenic Intergenic 51524 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 338-476 chr6 128980070 128980317 + 2 NA intron (NM_000426, intron 1 of 64) intron (NM_000426, intron 1 of 64) 97052 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 324-432 chr5 105762665 105762902 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 663309 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 307-101 chr12 33794890 33795152 + 2 NA Intergenic Intergenic -227475 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 441-136 chr2 172353373 172353673 + 2 NA Intergenic Intergenic -73813 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 492-145 chr2 214301271 214301549 + 2 NA intron (NR_047660, intron 14 of 14) L1P4|LINE|L1 -109644 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 584-2 chr1 18820688 18821085 + 2 NA Intergenic Intergenic 38775 NM_152232 80834 Hs.553548 NM_152232 ENSG00000179002 TAS1R2 GPR71|T1R2|TR2 taste 1 receptor member 2 protein-coding 224-129 chr19 30805604 30805802 + 2 NA Intergenic Intergenic -361807 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 286-75 chr11 88572159 88572421 + 2 NA intron (NM_001143831, intron 6 of 8) intron (NM_001143831, intron 6 of 8) 67714 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 298-364 chr5 56663224 56663433 + 2 NA Intergenic Intergenic -57072 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 412-157 chr2 62592638 62592983 + 2 NA Intergenic AluJo|SINE|Alu -81068 NM_001142615 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 273-3 chr1 18489536 18489705 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 8690 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 312-547 chr9 80633907 80634080 + 2 NA Intergenic L1MC3|LINE|L1 658970 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 586-143 chr7 68617976 68618390 + 2 NA Intergenic AluSx1|SINE|Alu 597930 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 457-157 chr3 56777818 56778193 + 2 NA intron (NM_001128615, intron 4 of 12) intron (NM_001128615, intron 4 of 12) -2288 NM_001128616 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 291-191 chr18 51827054 51827313 + 2 NA Intergenic Intergenic 435141 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 364-192 chr2 3258727 3258970 + 2 NA intron (NM_003310, intron 3 of 8) intron (NM_003310, intron 3 of 8) 118970 NM_001330530 7260 Hs.502770 NM_003310 ENSG00000032389 EIPR1 EIPR-1|TSSC1 EARP complex and GARP complex interacting protein 1 protein-coding 297-246 chr2 202061968 202062144 + 2 NA Intergenic Intergenic -11199 NM_001277372 100652824 Hs.686898 NM_001080445 ENSG00000182329 KIAA2012 - KIAA2012 protein-coding 509-166 chr3 192775419 192775795 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -48066 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 487-2 chr1 5153073 5153472 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 498663 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 364-433 chr8 56806034 56806249 + 2 NA Intergenic L1MDa|LINE|L1 187726 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 707-82 chr5 81027118 81027588 + 2 NA intron (NM_006909, intron 1 of 26) L1MC2|LINE|L1 -66446 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 265-254 chr4 10224793 10225042 + 2 NA Intergenic L1MC4|LINE|L1 -108118 NM_017491 9948 Hs.128548 NM_005112 ENSG00000071127 WDR1 AIP1|HEL-S-52|NORI-1 WD repeat domain 1 protein-coding 293-220 chr2 204002355 204002587 + 2 NA Intergenic Intergenic 65723 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 339-384 chr3 172465005 172465223 + 2 NA Intergenic Intergenic -16658 NM_004122 2693 Hs.130212 NM_004122 ENSG00000121853 GHSR GHDP growth hormone secretagogue receptor protein-coding 488-262 chr8 3796411 3796737 + 2 NA intron (NM_033225, intron 5 of 69) intron (NM_033225, intron 5 of 69) -1068123 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 343-454 chr6 954767 955031 + 2 NA Intergenic Intergenic 86401 NR_110853 101927691 Hs.552556 NR_110853 LOC101927691 - uncharacterized LOC101927691 ncRNA 199-160 chr3 76071064 76071250 + 2 NA Intergenic Intergenic -285608 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 418-54 chr12 37883531 37883931 + 2 NA Intergenic ALR/Alpha|Satellite|centr -433043 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 386-353 chr8 92143630 92143907 + 2 NA Intergenic L1MC4|LINE|L1 -40383 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 138-72 chr5 106177284 106177386 + 2 NA Intergenic L1MB4|LINE|L1 833679 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 190-193 chr9 28608174 28608298 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 111069 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 350-257 chr2 205615710 205615894 + 2 NA exon (NM_152526, exon 22 of 22) exon (NM_152526, exon 22 of 22) -66698 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 380-135 chr15 61717033 61717352 + 2 NA Intergenic L2c|LINE|L2 -12726 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 308-72 chr10 111478967 111479152 + 2 NA Intergenic Intergenic 364768 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 220-343 chr7 50242744 50242902 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -61241 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 529-138 chr3 79710661 79711139 + 2 NA intron (NM_002941, intron 1 of 30) intron (NM_002941, intron 1 of 30) 57098 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 408-16 chr1 95551643 95551927 + 2 NA Intergenic Intergenic 41669 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 440-2 chr1 17781806 17782169 + 2 NA intron (NM_030812, intron 1 of 2) intron (NM_030812, intron 1 of 2) 26654 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 334-105 chr12 18060579 18060786 + 2 NA Intergenic L1MB1|LINE|L1 29511 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 249-469 chrX 88226712 88226912 + 2 NA Intergenic L1MB1|LINE|L1 -520413 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 239-336 chr5 150943644 150943846 + 2 NA intron (NR_026867, intron 2 of 4) intron (NR_026867, intron 2 of 4) 2839 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 361-385 chr6 18591405 18591605 + 2 NA intron (NR_149116, intron 4 of 7) intron (NR_149116, intron 4 of 7) 19721 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 417-133 chr2 66544288 66544622 + 2 NA intron (NM_002398, intron 8 of 12) intron (NM_002398, intron 8 of 12) -29575 NR_110156 100507073 Hs.667940 NR_110156 ENSG00000232046 LINC01798 - long intergenic non-protein coding RNA 1798 ncRNA 339-327 chr21 15661762 15662094 + 2 NA Intergenic AluJo|SINE|Alu -68006 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 429-130 chr18 62682582 62682844 + 2 NA Intergenic Intergenic -32828 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 318-104 chr11 58115852 58116141 + 2 NA intron (NM_001005212, intron 2 of 2) L1ME3B|LINE|L1 3448 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 207-306 chr8 137757718 137757884 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 325744 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 291-301 chr3 162193149 162193417 + 2 NA Intergenic Intergenic 696475 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 220-262 chr4 89586303 89586468 + 2 NA Intergenic Intergenic -250016 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 246-199 chr2 106345993 106346205 + 2 NA Intergenic L1M8|LINE|L1 -23646 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 271-241 chr21 29577453 29577637 + 2 NA intron (NM_000830, intron 13 of 16) intron (NM_000830, intron 13 of 16) -18495 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 460-204 chr3 110826895 110827272 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 242876 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 303-407 chr6 162662954 162663164 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -64073 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 431-275 chr7 103012922 103013272 + 2 NA intron (NR_105043, intron 7 of 20) L1PA15|LINE|L1 39667 NM_001085386 58160 Hs.621233 NM_001085386 ENSG00000230257 NFE4 NF-E4 nuclear factor, erythroid 4 protein-coding 342-343 chr3 183420647 183420839 + 2 NA intron (NM_015078, intron 1 of 29) THE1D|LTR|ERVL-MaLR 7526 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 454-70 chr12 18575115 18575435 + 2 NA intron (NM_001288774, intron 29 of 32) MER5A|DNA|hAT-Charlie 162234 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 240-404 chr7 117589442 117589677 + 2 NA intron (NM_000492, intron 12 of 26) intron (NM_000492, intron 12 of 26) -24883 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 247-386 chr7 94383003 94383147 + 2 NA intron (NR_147206, intron 4 of 5) MER20|DNA|hAT-Charlie 9117 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 400-370 chr9 102800946 102801269 + 2 NA Intergenic L1MEf|LINE|L1 -194226 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 456-44 chr11 4555774 4556041 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 10716 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 507-73 chr13 51176223 51176576 + 2 NA Intergenic Intergenic -4011 NR_102431 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 170-144 chr8 135044096 135044183 + 2 NA Intergenic L2c|LINE|L2 -189992 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 527-33 chr10 66509685 66510063 + 2 NA intron (NM_001127384, intron 11 of 17) L1MA5A|LINE|L1 -416162 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 643-90 chr4 97614319 97614920 + 2 NA intron (NM_174952, intron 10 of 10) HSMAR2|DNA|TcMar-Mariner 247693 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 224-191 chr3 22891498 22891672 + 2 NA Intergenic L2|LINE|L2 310993 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 375-265 chr3 73424150 73424364 + 2 NA intron (NM_015009, intron 3 of 9) AluY|SINE|Alu 9738 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 225-293 chr5 133628597 133628744 + 2 NA Intergenic L1PA7|LINE|L1 -16129 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 221-57 chr11 104760010 104760199 + 2 NA Intergenic L1M2|LINE|L1 138566 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 382-433 chr9 31415841 31416096 + 2 NA Intergenic AluSx1|SINE|Alu -34478 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 297-384 chr5 150338269 150338552 + 2 NA Intergenic Intergenic -19229 NM_001135243 6949 Hs.519672 NM_000356 ENSG00000070814 TCOF1 MFD1|TCS|TCS1|treacle treacle ribosome biogenesis factor 1 protein-coding 371-260 chr3 158430262 158430455 + 2 NA intron (NM_001271838, intron 6 of 9) MER117|DNA|hAT-Charlie -96350 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 345-180 chr15 91989615 91989914 + 2 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 135460 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 503-282 chr8 106105947 106106295 + 2 NA Intergenic LTR49-int|LTR|ERV1 -45618 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 391-314 chr6 122607420 122607728 + 2 NA intron (NM_181794, intron 3 of 6) MER45A|DNA|hAT-Tip100 -2658 NM_032471 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 292-199 chr2 3855107 3855285 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 118836 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 528-29 chr10 32089345 32089745 + 2 NA Intergenic L1PA16|LINE|L1 -33120 NM_004521 3799 Hs.327736 NM_004521 ENSG00000170759 KIF5B HEL-S-61|KINH|KNS|KNS1|UKHC kinesin family member 5B protein-coding 162-113 chr6 113262103 113262190 + 2 NA Intergenic Intergenic 171301 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 525-184 chr4 175877125 175877549 + 2 NA intron (NR_048571, intron 1 of 5) intron (NR_048571, intron 1 of 5) -64223 NM_201591 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 245-36 chr10 33854232 33854401 + 2 NA Intergenic L1M3|LINE|L1 -81636 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 248-392 chr8 18370128 18370266 + 2 NA Intergenic L1PREC2|LINE|L1 -21085 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 170-32 chr12 12662176 12662319 + 2 NA exon (NM_006143, exon 4 of 4) exon (NM_006143, exon 4 of 4) 33936 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 320-461 chr5 129004059 129004221 + 2 NA intron (NM_001017372, intron 4 of 9) MER101|LTR|ERV1 38652 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 640-25 chr12 98095571 98095959 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -100317 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 315-478 chr8 81381477 81381754 + 2 NA Intergenic L1MA4A|LINE|L1 65824 NM_001348381 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 338-236 chr19 36563770 36564026 + 2 NA intron (NM_001145650, intron 2 of 4) L1PA16|LINE|L1 -9172 NR_110703 101927599 Hs.515376 NR_110703 ENSG00000233527 ZNF529-AS1 - ZNF529 antisense RNA 1 ncRNA 211-48 chr11 39937563 39937715 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 355491 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 423-86 chr15 68959585 68959952 + 2 NA intron (NM_001184780, intron 1 of 15) LTR12|LTR|ERV1 29243 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 345-105 chr12 2452616 2452889 + 2 NA intron (NM_199460, intron 4 of 49).2 intron (NM_199460, intron 4 of 49).2 182976 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 365-268 chr3 147145781 147145996 + 2 NA Intergenic L1MEf|LINE|L1 223965 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 309-429 chr5 23022334 23022592 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -169119 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 435-50 chr11 63251098 63251467 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -21630 NM_199352 387601 Hs.332119 NM_199352 ENSG00000196600 SLC22A25 HIMTP|UST6 solute carrier family 22 member 25 protein-coding 374-346 chr6 128780566 128780867 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -102422 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 649-83 chr4 118081998 118082507 + 2 NA intron (NM_004784, intron 2 of 13) intron (NM_004784, intron 2 of 13) 47766 NM_004784 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 257-333 chr5 129831349 129831560 + 2 NA Intergenic MER20|DNA|hAT-Charlie -73011 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 455-180 chr4 43538514 43538939 + 2 NA Intergenic Intergenic -46183 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 278-190 chr19 33953201 33953393 + 2 NA Intergenic Intergenic 156427 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 287-117 chr12 96811103 96811373 + 2 NA intron (NM_001306084, intron 63 of 67) intron (NM_001306084, intron 63 of 67) -96019 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 298-179 chr18 55691704 55691993 + 2 NA Intergenic MER33|DNA|hAT-Charlie -55891 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 397-112 chr16 84406913 84407247 + 2 NA intron (NM_001291454, intron 1 of 23) intron (NM_001291454, intron 1 of 23) 492 NM_001291454 9914 Hs.6168 NM_014861 ENSG00000064270 ATP2C2 SPCA2 ATPase secretory pathway Ca2+ transporting 2 protein-coding 213-189 chr3 183563907 183564102 + 2 NA Intergenic MIRb|SINE|MIR -8298 NM_130446 89857 Hs.659147 NM_130446 ENSG00000172578 KLHL6 - kelch like family member 6 protein-coding 329-99 chr11 82294960 82295140 + 2 NA intron (NR_120571, intron 3 of 7) AluSz|SINE|Alu 108863 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 226-79 chr13 30766051 30766220 + 2 NA Intergenic L1MA4A|LINE|L1 30627 NM_001629 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 290-409 chr7 21659957 21660144 + 2 NA intron (NM_001277115, intron 30 of 81) intron (NM_001277115, intron 30 of 81) 117011 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 144-76 chr5 16437984 16438074 + 2 NA intron (NR_104625, intron 3 of 8) HERV16-int|LTR|ERVL 3073 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 340-303 chr2 232395265 232395543 + 2 NA Intergenic AluJo|SINE|Alu -8360 NR_028501 347694 Hs.452575 NR_028501 ENSG00000244280 ECEL1P2 ECEL2 endothelin converting enzyme like 1 pseudogene 2 pseudo 574-124 chr4 46672326 46672819 + 2 NA Intergenic L2a|LINE|L2 236673 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 262-387 chr6 169178101 169178245 + 2 NA intron (NR_125863, intron 2 of 2) intron (NR_125863, intron 2 of 2) 4567 NR_125863 101929504 Hs.147721 NR_125863 ENSG00000261039 LINC02544 - long intergenic non-protein coding RNA 2544 ncRNA 234-161 chr2 30946213 30946418 + 2 NA intron (NM_024572, intron 6 of 14) MSTA|LTR|ERVL-MaLR -138869 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 221-70 chr13 59306741 59306936 + 2 NA Intergenic Intergenic -705880 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 306-297 chr3 13284323 13284581 + 2 NA Intergenic MamRep4096|DNA|hAT-Tip100 135870 NM_024923 23225 Hs.475525 NM_024923 ENSG00000132182 NUP210 GP210|POM210 nucleoporin 210 protein-coding 555-104 chr2 145380602 145381103 + 2 NA Intergenic Intergenic 712885 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 395-273 chr5 63479053 63479346 + 2 NA Intergenic L1M4|LINE|L1 483093 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 200-106 chr17 57769750 57769919 + 2 NA Intergenic Intergenic -24535 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 289-453 chr8 4704667 4704879 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 290141 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 385-308 chr5 127138270 127138470 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -64878 NM_001164478 401207 Hs.49573 NM_001164478 ENSG00000164241 C5orf63 YDR286C chromosome 5 open reading frame 63 protein-coding 251-156 chr2 13009994 13010144 + 2 NA Intergenic Intergenic -3056 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 540-226 chr9 72820985 72821402 + 2 NA intron (NM_138691, intron 20 of 23) intron (NM_138691, intron 20 of 23) 52916 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 308-223 chr2 41372077 41372289 + 2 NA Intergenic L1PA13|LINE|L1 -505372 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 513 chr1 36820392 36820849 + 2 NA intron (NM_000831, intron 11 of 15) L1ME3G|LINE|L1 213895 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 396-297 chr5 139540607 139540819 + 2 NA Intergenic AluSq2|SINE|Alu -20453 NM_181838 7322 Hs.108332 NM_003339 ENSG00000131508 UBE2D2 E2(17)KB2|PUBC1|UBC4|UBC4/5|UBCH4|UBCH5B ubiquitin conjugating enzyme E2 D2 protein-coding 407-27 chr10 29278685 29279013 + 2 NA Intergenic Intergenic -10221 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 630-95 chr4 61306965 61307408 + 2 NA intron (NM_001371342, intron 1 of 20) MIRc|SINE|MIR 105014 NM_001371342 225-95 chr14 70413177 70413338 + 2 NA intron (NM_001202549, intron 1 of 4) Plat_L3|LINE|CR1 3833 NM_001202549 100529257 Hs.443661 NM_001202547 ENSG00000258644 SYNJ2BP-COX16 - SYNJ2BP-COX16 readthrough protein-coding 322-52 chr10 20371805 20372119 + 2 NA Intergenic L1MEd|LINE|L1 -180008 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 256-323 chr5 85920332 85920513 + 2 NA Intergenic L1PREC2|LINE|L1 -362022 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 189-218 chr8 135118112 135118269 + 2 NA Intergenic Intergenic -115941 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 257-224 chr2 203703278 203703450 + 2 NA Intergenic L1P4|LINE|L1 -3111 NM_001243078 940 Hs.443123 NM_006139 ENSG00000178562 CD28 Tp44 CD28 molecule protein-coding 856-48 chr7 120893202 120893768 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -35341 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 416-72 chr11 80875965 80876236 + 2 NA Intergenic Intergenic -113297 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 349-413 chr5 45015021 45015263 + 2 NA Intergenic Intergenic 206195 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 166-90 chr5 18173472 18173606 + 2 NA Intergenic Intergenic 366265 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 249-159 chr18 1670075 1670266 + 2 NA Intergenic L2c|LINE|L2 -310541 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 555-27 chr10 125411581 125411975 + 2 NA Intergenic AluSg4|SINE|Alu -162593 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 489-81 chr14 72717351 72717688 + 2 NA intron (NM_001280544, intron 5 of 9) L2c|LINE|L2 175130 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 320-35 chr1 195034721 195034898 + 2 NA Intergenic L1PB3|LINE|L1 1053906 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 346-219 chr19 37536444 37536649 + 2 NA intron (NM_001013659, intron 7 of 7) MER58A|DNA|hAT-Charlie -12403 NR_038247 100507433 Hs.121283 NR_038247 ENSG00000267470 ZNF571-AS1 - ZNF571 antisense RNA 1 ncRNA 351-113 chr13 92565830 92566177 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 75840 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 360-140 chr15 46370099 46370372 + 2 NA Intergenic Intergenic 665040 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 653-67 chr2 59706780 59707301 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 489332 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 550-248 chr9 129526071 129526462 + 2 NA Intergenic L1ME3A|LINE|L1 37606 NR_038955 100506190 Hs.529860 NR_038955 LINC00963 MetaLnc9 long intergenic non-protein coding RNA 963 ncRNA 264-117 chr13 90906647 90906866 + 2 NA intron (NR_027039, intron 2 of 5) L1M3|LINE|L1 19841 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 378 chr1 5195138 5195374 + 2 NA Intergenic Intergenic 540647 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 226-36 chr10 23019420 23019586 + 2 NA intron (NM_001282745, intron 16 of 18) L1ME1|LINE|L1 -76076 NM_012228 22921 Hs.461420 NM_012228 ENSG00000148450 MSRB2 CBS-1|CBS1|CGI-131|MSRB|PILB methionine sulfoxide reductase B2 protein-coding 486-17 chr1 215505663 215506043 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -61451 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 126-55 chr5 94328796 94328917 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -217157 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 433-257 chr6 164887609 164887963 + 2 NA Intergenic L1MD|LINE|L1 -65723 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 279-254 chr3 53614156 53614365 + 2 NA intron (NM_001128840, intron 3 of 47) LTR41|LTR|ERVL 119649 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 224-67 chr12 92367655 92367820 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -53794 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 341-574 chrX 58068596 58068882 + 2 NA Intergenic ALR/Alpha|Satellite|centr -158106 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 344-533 chrX 87678300 87678571 + 2 NA Intergenic L1PA12|LINE|L1 160633 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 381-264 chr4 30501973 30502188 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -218289 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 228-260 chr5 13610819 13611029 + 2 NA Intergenic Intergenic 333556 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 262-50 chr10 59962487 59962741 + 2 NA Intergenic Intergenic -1701 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 221-248 chr5 115977432 115977607 + 2 NA intron (NM_173800, intron 1 of 19) L1ME1|LINE|L1 15044 NM_173800 206338 Hs.98288 NM_173800 ENSG00000172901 LVRN APQ|AQPEP|TAQPEP laeverin protein-coding 146-54 chr3 33320000 33320132 + 2 NA intron (NR_146129, intron 4 of 15) L1ME3F|LINE|L1 42624 NR_146133 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 714-28 chr16 13705420 13705970 + 2 NA Intergenic L1MEf|LINE|L1 -214462 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 150-91 chr5 39522886 39523014 + 2 NA intron (NR_104632, intron 2 of 2) LTR16A1|LTR|ERVL 2519 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 258-134 chr14 87211896 87212075 + 2 NA Intergenic L1MB7|LINE|L1 306207 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 248-199 chr2 117678834 117679022 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -135763 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 505-160 chr2 165688177 165688514 + 2 NA 3' UTR (NM_001172173, exon 7 of 7) 3' UTR (NM_001172173, exon 7 of 7) 105902 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 563-119 chr3 15891989 15892355 + 2 NA Intergenic Intergenic 18401 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 369-7 chr1 65643113 65643355 + 2 NA Intergenic LTR7|LTR|ERV1 117545 NM_001198688 3953 Hs.23581 NM_002303 ENSG00000116678 LEPR CD295|LEP-R|LEPRD|OB-R|OBR leptin receptor protein-coding 287-367 chr6 137892601 137892868 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie -24501 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 WAKMAR2 lnc-TNFAIP3 wound and keratinocyte migration associated lncRNA 2 ncRNA 177-168 chr9 78091576 78091689 + 2 NA Intergenic L1ME4a|LINE|L1 -59821 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 366-345 chr5 93649037 93649353 + 2 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -28407 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 292-8 chr1 49272542 49272749 + 2 NA intron (NR_136623, intron 2 of 12) LTR49-int|LTR|ERV1 15234 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 356-454 chr7 69138842 69139158 + 2 NA Intergenic AluSz|SINE|Alu 458624 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 385-79 chr13 35942671 35942909 + 2 NA intron (NM_001330071, intron 4 of 16) L3|LINE|CR1 -86929 NM_001195415 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 901-26 chr4 165589846 165590537 + 2 NA Intergenic MER4D|LTR|ERV1 -94448 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 711-70 chr8 92631543 92632073 + 2 NA intron (NR_125827, intron 2 of 4) intron (NR_125827, intron 2 of 4) 23686 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 517-7 chr1 75646790 75647282 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -30873 NM_001320283 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 391-204 chr20 36074028 36074362 + 2 NA Intergenic Intergenic -17219 NM_001258331 2036 Hs.437422 NM_012156 ENSG00000088367 EPB41L1 4.1N|MRD11 erythrocyte membrane protein band 4.1 like 1 protein-coding 335-428 chr5 77784354 77784672 + 2 NA Intergenic L1M5|LINE|L1 -8152 NM_004607 6902 Hs.291212 NM_004607 ENSG00000171530 TBCA - tubulin folding cofactor A protein-coding 173-69 chr2 82271717 82271883 + 2 NA Intergenic Intergenic -585003 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 300-461 chr8 79275064 79275299 + 2 NA Intergenic L1PA16|LINE|L1 -57007 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 367-387 chr6 40039506 40039804 + 2 NA Intergenic Intergenic -105193 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 467-283 chr8 101580193 101580544 + 2 NA intron (NM_024915, intron 7 of 15) L1MA4|LINE|L1 87929 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 492-195 chr4 102613591 102613889 + 2 NA intron (NM_003998, intron 23 of 23) intron (NM_003998, intron 23 of 23) -111254 NR_136202 105377621 Hs.15833 NR_136202 LOC105377621 - uncharacterized LOC105377621 ncRNA 315-122 chr14 31331715 31331985 + 2 NA intron (NM_015473, intron 22 of 35) THE1C|LTR|ERVL-MaLR 88700 NM_015473 25938 Hs.744979 NM_015473 ENSG00000129493 HEATR5A C14orf125 HEAT repeat containing 5A protein-coding 290-120 chr13 64573040 64573202 + 2 NA Intergenic L1MC1|LINE|L1 -497110 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 288-13 chr1 87168443 87168678 + 2 NA non-coding (NR_026989, exon 3 of 3) non-coding (NR_026989, exon 3 of 3) 36634 NR_026987 339524 Hs.306423 NM_207357 ENSG00000267272 LINC01140 - long intergenic non-protein coding RNA 1140 ncRNA 258-398 chr8 101729906 101730138 + 2 NA intron (NM_001040625, intron 4 of 6) intron (NM_001040625, intron 4 of 6) 60947 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 300-31 chr10 10139547 10139816 + 2 NA Intergenic L1MEc|LINE|L1 80959 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 249-366 chr6 159138821 159138981 + 2 NA Intergenic L1ME4a|LINE|L1 -30499 NM_032532 84624 Hs.520525 NM_032532 ENSG00000164694 FNDC1 AGS8|FNDC2|MEL4B3|bA243O10.1|dJ322A24.1 fibronectin type III domain containing 1 protein-coding 327-181 chr16 14048751 14048932 + 2 NA Intergenic L2b|LINE|L2 -22221 NM_001365420 57496 Hs.49143 NM_014048 ENSG00000186260 MRTFB MKL2|MRTF-B|NPD001 myocardin related transcription factor B protein-coding 211-80 chr13 114063890 114064058 + 2 NA intron (NM_001320821, intron 2 of 25).2 intron (NM_001320821, intron 2 of 25).2 13981 NM_001320822 22821 Hs.593075 NM_007368 ENSG00000185989 RASA3 GAP1IP4BP|GAPIII RAS p21 protein activator 3 protein-coding 184-96 chr2 101444885 101445032 + 2 NA intron (NM_001367509, intron 4 of 13) MIR|SINE|MIR 30154 NM_001367508 731220 Hs.662488 NM_207403 ENSG00000196460 RFX8 - RFX family member 8, lacking RFX DNA binding domain protein-coding 349-443 chr6 53333560 53333804 + 2 NA TTS (NR_046241) TTS (NR_046241) 3935 NR_046241 647190 Hs.520189 NR_046241 RPS16P5 RPS16_3_702 ribosomal protein S16 pseudogene 5 pseudo 384-44 chr10 93103327 93103596 + 2 NA Intergenic L1ME1|LINE|L1 29568 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 538-154 chr3 105254244 105254632 + 2 NA Intergenic Intergenic -112275 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 550-146 chr3 63415503 63415872 + 2 NA intron (NM_001130003, intron 2 of 5) MER58A|DNA|hAT-Charlie -27625 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 348-514 chr8 66889817 66889993 + 2 NA intron (NM_001136160, intron 9 of 13) intron (NM_001136160, intron 9 of 13) 18403 NM_001136160 157777 Hs.437006 NM_173518 ENSG00000178460 MCMDC2 C8orf45 minichromosome maintenance domain containing 2 protein-coding 252-438 chr8 130487627 130487821 + 2 NA Intergenic MIRb|SINE|MIR -44050 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 346-300 chr3 19256018 19256235 + 2 NA intron (NM_144633, intron 2 of 15) MER20|DNA|hAT-Charlie 58805 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 278-107 chr14 52530259 52530473 + 2 NA intron (NM_020784, intron 6 of 20) (TA)n|Simple_repeat|Simple_repeat 22139 NM_020784 57544 Hs.532609 NM_020784 ENSG00000087301 TXNDC16 ERp90|KIAA1344 thioredoxin domain containing 16 protein-coding 581-9 chr10 24309366 24309861 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 33928 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 423-175 chr3 35394060 35394418 + 2 NA promoter-TSS (NR_110817) promoter-TSS (NR_110817) -216 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 511-243 chr7 9778341 9778758 + 2 NA Intergenic LTR28B|LTR|ERV1 144279 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 191-53 chr14 40727136 40727310 + 2 NA Intergenic L1MA2|LINE|L1 -227488 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 412-200 chr22 39851417 39851774 + 2 NA intron (NM_152512, intron 3 of 6) intron (NM_152512, intron 3 of 6) 42165 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 359-328 chr3 102347214 102347491 + 2 NA Intergenic Intergenic -87663 NM_001329788 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 271-314 chr4 72688433 72688634 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -119312 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 775-6 chr1 207128762 207129372 + 2 NA intron (NM_000715, intron 7 of 11) L1M4b|LINE|L1 24834 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 554-72 chr14 61683612 61683995 + 2 NA intron (NR_047116, intron 1 of 1) intron (NR_047116, intron 1 of 1) -11710 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 175-96 chr21 14390676 14390818 + 2 NA Intergenic L1MEg|LINE|L1 -7601 NM_006948 6782 Hs.352341 NM_006948 ENSG00000155304 HSPA13 STCH heat shock protein family A (Hsp70) member 13 protein-coding 489-267 chr9 37209158 37209499 + 2 NA intron (NM_001289120, intron 2 of 8) AluY|SINE|Alu 88730 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 345-106 chr12 10373222 10373534 + 2 NA intron (NM_001199805, intron 12 of 12) intron (NM_001199805, intron 12 of 12) 9609 NR_120430 101928100 Hs.638425 NR_120430 ENSG00000245648 LOC101928100 - uncharacterized LOC101928100 ncRNA 411-4 chr1 58054448 58054678 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 193982 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 403-323 chr9 72317272 72317612 + 2 NA intron (NR_110952, intron 2 of 4) AluSx1|SINE|Alu 12006 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 350-544 chr8 134447338 134447556 + 2 NA Intergenic Intergenic -150624 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 322-383 chr4 97972205 97972399 + 2 NA exon (NM_174952, exon 7 of 11) exon (NM_174952, exon 7 of 11) 171174 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 679-3 chr1 30742454 30743074 + 2 NA intron (NM_006762, intron 1 of 7) MIR|SINE|MIR -3532 NR_039616 100616164 NR_039616 ENSG00000264773 MIR4420 mir-4420 microRNA 4420 ncRNA 220-195 chr2 234561254 234561404 + 2 NA Intergenic L1MEi|LINE|L1 -64248 NM_001282431 10123 Hs.111554 NM_005737 ENSG00000188042 ARL4C ARL7|LAK ADP ribosylation factor like GTPase 4C protein-coding 459-317 chr8 138415000 138415342 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 82090 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 259-90 chr12 62141336 62141569 + 2 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 51387 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 333-434 chr5 19688415 19688736 + 2 NA intron (NM_001349562, intron 5 of 13) L1MA4A|LINE|L1 197697 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 377-298 chr4 162723396 162723717 + 2 NA Intergenic Intergenic 370072 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 305-573 chrX 93215172 93215425 + 2 NA Intergenic Intergenic -390395 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 579-8 chr1 202696484 202696913 + 2 NA intron (NM_177402, intron 1 of 8) intron (NM_177402, intron 1 of 8) 13756 NM_177402 127833 Hs.25422 NM_177402 ENSG00000143858 SYT2 CMS7|MYSPC|SytII synaptotagmin 2 protein-coding 277-148 chr17 44800428 44800626 + 2 NA 3' UTR (NM_005497, exon 3 of 3) 3' UTR (NM_005497, exon 3 of 3) 29760 NM_005497 10052 Hs.712052 NM_005497 ENSG00000182963 GJC1 CX45|GJA7 gap junction protein gamma 1 protein-coding 347-251 chr2 189698992 189699203 + 2 NA intron (NM_144708, intron 7 of 22) L2a|LINE|L2 23112 NM_144708 150709 Hs.60772 NM_144708 ENSG00000151687 ANKAR - ankyrin and armadillo repeat containing protein-coding 126-51 chr5 56043976 56044099 + 2 NA Intergenic Intergenic 48870 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 207-234 chr5 22767218 22767390 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 86040 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 302-335 chr4 156358961 156359208 + 2 NA Intergenic Intergenic -405218 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 167-85 chr5 2940403 2940557 + 2 NA Intergenic Intergenic 22626 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 375-263 chr3 68791365 68791731 + 2 NA intron (NM_001005527, intron 3 of 5) MLT1C|LTR|ERVL-MaLR 140999 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 461-131 chr2 77247926 77248219 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 262107 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 350-76 chr11 71360673 71360857 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 62589 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 312-83 chr11 60123326 60123528 + 2 NA Intergenic L2|LINE|L2 34763 NM_001256916 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 184-182 chr9 82862719 82862859 + 2 NA Intergenic Intergenic 200353 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 403-204 chr3 147435517 147435876 + 2 NA intron (NR_121655, intron 1 of 2) Tigger3b|DNA|TcMar-Tigger 14369 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 305-388 chr4 62468994 62469217 + 2 NA Intergenic L1PA16|LINE|L1 -307340 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 312-268 chr2 152271919 152272218 + 2 NA Intergenic L1M4|LINE|L1 -63106 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 440-84 chr16 52690982 52691269 + 2 NA Intergenic L1MEg|LINE|L1 -84150 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 200-30 chr10 33389157 33389308 + 2 NA Intergenic Intergenic -54327 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 620-105 chr5 17226139 17226655 + 2 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 8766 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 320-57 chr10 32865084 32865397 + 2 NA intron (NM_001321115, intron 42 of 43) L1ME2z|LINE|L1 36232 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 353-65 chr10 78565720 78565983 + 2 NA Intergenic Intergenic 298509 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 325-566 chr9 1363265 1363562 + 2 NA Intergenic Intergenic 311926 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 657-7 chr1 118236459 118236912 + 2 NA Intergenic L1PB1|LINE|L1 -51457 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 487-29 chr1 214097570 214097882 + 2 NA Intergenic L1PA15|LINE|L1 109193 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 678-20 chr12 46696201 46696789 + 2 NA Intergenic Intergenic 129502 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 280-317 chr5 30055377 30055574 + 2 NA Intergenic L1MA3|LINE|L1 174915 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 307-423 chr6 51970668 51970828 + 2 NA intron (NM_138694, intron 35 of 66) L1PB2|LINE|L1 116865 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 146-90 chr8 114809137 114809227 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 858831 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 363-326 chr4 61647797 61648107 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 445780 NM_001371342 389-55 chr11 22591594 22591920 + 2 NA Intergenic Intergenic 34084 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 350-554 chr9 77112767 77112946 + 2 NA Intergenic L1MC4|LINE|L1 -64589 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 183-29 chr12 10634646 10634779 + 2 NA intron (NM_018423, intron 2 of 10) intron (NM_018423, intron 2 of 10) -21103 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 366-294 chr3 190061629 190061969 + 2 NA intron (NM_001134418, intron 1 of 14) MIRb|SINE|MIR 59098 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 348-15 chr1 106257686 106258027 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -229603 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 217-68 chr11 40635073 40635256 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -342034 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 185-9 chr1 178716109 178716241 + 2 NA Intergenic Intergenic -8972 NM_001286247 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 1154-9 chr6 20886392 20887128 + 2 NA intron (NM_017774, intron 9 of 15) L1MB4|LINE|L1 352303 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 397-362 chrUn_KI270438v1 99058 99373 + 2 NA NA (GGAATGGAAT)n|Simple_repeat|Simple_repeat NA NA 180-101 chr22 36958177 36958323 + 2 NA Intergenic L1MEc|LINE|L1 -6998 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 548-156 chr3 160724735 160725159 + 2 NA Intergenic L1PA16|LINE|L1 -31284 NM_139245 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 442-210 chr4 53820778 53821129 + 2 NA Intergenic Intergenic 125052 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 243-466 chr8 139904749 139904912 + 2 NA intron (NM_001160372, intron 20 of 22) intron (NM_001160372, intron 20 of 22) 195705 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 566-181 chr7 62989011 62989535 + 2 NA Intergenic ALR/Alpha|Satellite|centr 314783 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 391-298 chr5 150970822 150971191 + 2 NA Intergenic L1MDa|LINE|L1 -24422 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 358-92 chr12 24039639 24039861 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -88718 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 457-101 chr19 12214232 12214558 + 2 NA Intergenic L1M1|LINE|L1 19380 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 338-85 chr10 113972936 113973116 + 2 NA Intergenic Intergenic -70840 NM_000684 153 Hs.99913 NM_000684 ENSG00000043591 ADRB1 ADRB1R|B1AR|BETA1AR|RHR adrenoceptor beta 1 protein-coding 353-519 chr8 62357533 62357764 + 2 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 108794 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 301-141 chr16 6927876 6928055 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 154156 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 322-280 chr2 189981543 189981707 + 2 NA Intergenic L1PA17|LINE|L1 81104 NM_005259 2660 Hs.41565 NM_005259 ENSG00000138379 MSTN GDF8|MSLHP myostatin protein-coding 237-293 chr5 45596174 45596386 + 2 NA intron (NM_021072, intron 2 of 7) MIR|SINE|MIR 100100 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 221-125 chr18 61190548 61190735 + 2 NA Intergenic Intergenic -142789 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 630-41 chr17 68833945 68834500 + 2 NA Intergenic Intergenic 121170 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 299-115 chr12 129749804 129750080 + 2 NA intron (NM_133448, intron 1 of 8) L1M4|LINE|L1 154083 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 265-238 chr3 37776645 37776854 + 2 NA intron (NR_110531, intron 3 of 3) intron (NR_110531, intron 3 of 3) 85031 NR_110531 101928153 Hs.657314 NR_110531 ENSG00000235257 ITGA9-AS1 - ITGA9 antisense RNA 1 ncRNA 362-163 chr14 100982352 100982548 + 2 NA promoter-TSS (NR_003215) promoter-TSS (NR_003215) 475 NR_003214 767599 NR_003214 ENSG00000272344 SNORD114-21 14q(II-21) small nucleolar RNA, C/D box 114-21 snoRNA 525-49 chr11 131082740 131083227 + 2 NA Intergenic L1MEf|LINE|L1 -166496 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 324-492 chr7 52691986 52692181 + 2 NA Intergenic Intergenic -343550 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 162-6 chr1 145877492 145877628 + 2 NA intron (NM_144698, intron 4 of 13) intron (NM_144698, intron 4 of 13) 8306 NM_144698 148741 Hs.710624 NM_144698 ENSG00000198483 ANKRD35 - ankyrin repeat domain 35 protein-coding 263-422 chr8 97242814 97243035 + 2 NA intron (NR_125390, intron 2 of 2) L4_C_Mam|LINE|RTE-X 35004 NM_033512 85453 Hs.173094 NM_033512 ENSG00000180543 TSPYL5 - TSPY like 5 protein-coding 195-183 chr5 7222549 7222675 + 2 NA Intergenic L1MEf|LINE|L1 46742 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 563-175 chr7 87270777 87271217 + 2 NA Intergenic L1MA4A|LINE|L1 -50410 NR_138030 79161 Hs.619593 NM_024315 ENSG00000135185 TMEM243 C7orf23|MM-TRAG|MMTRAG transmembrane protein 243 protein-coding 263-243 chr22 25649917 25650144 + 2 NA intron (NM_005160, intron 3 of 20) AluSx3|SINE|Alu 85355 NM_005160 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 525-167 chr3 156201256 156201632 + 2 NA intron (NM_003471, intron 1 of 13) L1MC1|LINE|L1 26439 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 318-119 chr11 121812627 121812808 + 2 NA Intergenic L1PA15|LINE|L1 287127 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 352-300 chr22 24717182 24717377 + 2 NA Intergenic AluSz|SINE|Alu -47222 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 190-57 chr14 66609372 66609505 + 2 NA intron (NM_001024218, intron 1 of 21) L1PA16|LINE|L1 102031 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 192-4 chr1 58241115 58241276 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 9308 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 262-383 chr6 118066403 118066645 + 2 NA intron (NM_001029858, intron 1 of 7) MLT1E1A|LTR|ERVL-MaLR -19379 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 225-72 chr12 46291822 46292034 + 2 NA Intergenic L1MA4|LINE|L1 -22885 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 402-224 chr3 193521099 193521449 + 2 NA intron (NM_032279, intron 1 of 29) L2c|LINE|L2 -31939 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 439-112 chr18 3430036 3430467 + 2 NA intron (NM_001278686, intron 2 of 3) Charlie1a|DNA|hAT-Charlie -17291 NM_173207 7050 Hs.373550 NM_003244 ENSG00000177426 TGIF1 HPE4|TGIF TGFB induced factor homeobox 1 protein-coding 344-436 chr6 126557928 126558119 + 2 NA Intergenic L1ME2|LINE|L1 73392 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 461-183 chr3 187902184 187902584 + 2 NA Intergenic Intergenic 74023 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 281-78 chr12 11737309 11737522 + 2 NA intron (NM_001987, intron 1 of 7) intron (NM_001987, intron 1 of 7) 87561 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 306-399 chr5 92179732 92180031 + 2 NA Intergenic Intergenic -796564 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 595-6 chr1 78338038 78338512 + 2 NA intron (NR_027310, intron 3 of 5) L1MC4|LINE|L1 108676 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 448-197 chr5 5045041 5045319 + 2 NA intron (NR_026994, intron 2 of 6) intron (NR_026994, intron 2 of 6) 10821 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 250-205 chr2 66084007 66084185 + 2 NA Intergenic MIRb|SINE|MIR 274232 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 282-334 chr4 38247476 38247658 + 2 NA Intergenic L1ME1|LINE|L1 -119347 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 485-319 chrX 43416850 43417269 + 2 NA Intergenic Intergenic -237848 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 311-166 chr15 93696225 93696529 + 2 NA Intergenic L1MEg|LINE|L1 -160183 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 199-192 chr4 182314667 182314780 + 2 NA intron (NM_001080477, intron 1 of 27) L1MEc|LINE|L1 71321 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 288-350 chr5 159375145 159375342 + 2 NA Intergenic L1PB4|LINE|L1 43725 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 521-182 chr4 99771355 99771743 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -45278 NM_014395 27071 Hs.436271 NM_014395 ENSG00000070190 DAPP1 BAM32 dual adaptor of phosphotyrosine and 3-phosphoinositides 1 protein-coding 355-353 chr4 25690017 25690302 + 2 NA Intergenic AluJb|SINE|Alu 33695 NM_001177999 10568 Hs.479372 NM_006424 ENSG00000157765 SLC34A2 NAPI-3B|NAPI-IIb|NPTIIb solute carrier family 34 member 2 protein-coding 257-249 chr21 23860870 23861097 + 2 NA Intergenic Intergenic 460394 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 341-21 chr1 78917158 78917471 + 2 NA intron (NM_022159, intron 12 of 14) intron (NM_022159, intron 12 of 14) 89416 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 392-52 chr12 21670201 21670519 + 2 NA Intergenic Intergenic -12505 NM_002300 3945 Hs.446149 NM_002300 ENSG00000111716 LDHB HEL-S-281|LDH-B|LDH-H|LDHBD|TRG-5 lactate dehydrogenase B protein-coding 427-192 chr4 108260371 108260779 + 2 NA Intergenic Intergenic 88455 NR_029373 641518 Hs.535760 NR_029373 ENSG00000232021 LEF1-AS1 LEF1NAT LEF1 antisense RNA 1 ncRNA 297-178 chr18 1467959 1468174 + 2 NA Intergenic Intergenic -108437 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 344-422 chr6 65519418 65519687 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 60252 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 303-161 chr16 63116648 63116892 + 2 NA Intergenic Intergenic -1080332 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 183-175 chrX 64791862 64791999 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 184520 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 341-54 chr10 17262079 17262289 + 2 NA Intergenic Intergenic -32199 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 278-326 chr5 10181307 10181540 + 2 NA Intergenic L1PA7|LINE|L1 68465 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 319-438 chr5 178475469 178475698 + 2 NA intron (NM_173465, intron 2 of 28) intron (NM_173465, intron 2 of 28) 114810 NM_173465 91522 Hs.660026 NM_173465 ENSG00000050767 COL23A1 - collagen type XXIII alpha 1 chain protein-coding 335-217 chr19 12519268 12519439 + 2 NA Intergenic L1M2|LINE|L1 32129 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 505-94 chr15 26251786 26252151 + 2 NA Intergenic L1MB3|LINE|L1 136155 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 338-595 chr9 90679053 90679253 + 2 NA Intergenic Intergenic -36329 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 325-425 chr5 9858962 9859156 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) 4682 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 172-91 chr4 54162576 54162737 + 2 NA Intergenic Intergenic 62493 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 297-75 chr11 46474907 46475066 + 2 NA intron (NM_001267782, intron 13 of 19) intron (NM_001267782, intron 13 of 19) -23097 NR_036117 100422827 NR_036117 ENSG00000265014 MIR3160-1 mir-3160-1 microRNA 3160-1 ncRNA 324-156 chr14 48961689 48961886 + 2 NA Intergenic Intergenic 624593 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 170-114 chr5 51014213 51014319 + 2 NA Intergenic Intergenic -44079 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 387-131 chr16 52601038 52601288 + 2 NA intron (NR_033920, intron 1 of 3) intron (NR_033920, intron 1 of 3) 5812 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 478-240 chr5 85152862 85153291 + 2 NA Intergenic MIRb|SINE|MIR -768196 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 408-60 chr11 28958695 28959044 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -481321 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 308-13 chr1 74562425 74562725 + 2 NA Intergenic MIR|SINE|MIR -14855 NR_121671 101927320 Hs.662589 NR_121670 ENSG00000234497 ERICH3-AS1 - ERICH3 antisense RNA 1 ncRNA 185-109 chr2 180030577 180030751 + 2 NA Intergenic L1MA2|LINE|L1 -23367 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 336-380 chr3 164637946 164638274 + 2 NA Intergenic MIR|SINE|MIR 193370 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 233-48 chr10 108618360 108618542 + 2 NA Intergenic Intergenic -549158 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 329-418 chr4 105952688 105953011 + 2 NA intron (NM_001184692, intron 8 of 10) intron (NM_001184692, intron 8 of 10) 57378 NM_001184692 255743 Hs.518921 NM_198278 ENSG00000168743 NPNT EGFL6L|POEM nephronectin protein-coding 283-26 chr1 173304297 173304501 + 2 NA intron (NR_037845, intron 2 of 2) intron (NR_037845, intron 2 of 2) -97068 NM_003326 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 328-329 chr21 32239824 32240070 + 2 NA Intergenic Intergenic 39102 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 308-79 chr11 21902038 21902285 + 2 NA Intergenic Intergenic -290924 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 287-351 chr6 64304987 64305168 + 2 NA intron (NM_001292009, intron 30 of 43) L1MA9|LINE|L1 498241 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 525-218 chr6 40814217 40814627 + 2 NA Intergenic Intergenic 208858 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 657-40 chr17 66192588 66193153 + 2 NA promoter-TSS (NM_001353127) promoter-TSS (NM_001353127) -737 NM_001353128 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 458-70 chr14 45532833 45533218 + 2 NA Intergenic L1PA10|LINE|L1 182577 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 237-273 chr4 116475634 116475811 + 2 NA Intergenic (ATATAC)n|Simple_repeat|Simple_repeat 175997 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 384-183 chr2 146101422 146101731 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -485481 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 339-283 chr2 161785675 161785889 + 2 NA intron (NM_001354453, intron 2 of 24) L1M3d|LINE|L1 161366 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 303-354 chr5 35102993 35103250 + 2 NA intron (NR_037910, intron 1 of 7) Tigger15a|DNA|TcMar-Tigger 15001 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 256-421 chr8 87155740 87155954 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 289432 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 251-280 chr4 184572045 184572207 + 2 NA Intergenic Intergenic -34543 NR_147158 105377585 Hs.519127 NR_147158 ENSG00000271538 LINC02427 - long intergenic non-protein coding RNA 2427 ncRNA 297-3 chr1 37022751 37023008 + 2 NA intron (NM_000831, intron 1 of 15) L2b|LINE|L2 11636 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 232-351 chr7 40008173 40008376 + 2 NA intron (NM_003718, intron 5 of 13) MER3|DNA|hAT-Charlie 57914 NM_031267 8621 Hs.233552 NM_003718 ENSG00000065883 CDK13 CDC2L|CDC2L5|CHDFIDD|CHED|hCDK13 cyclin dependent kinase 13 protein-coding 316-215 chr17 73855653 73855950 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -27264 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 337-543 chr8 104584146 104584462 + 2 NA intron (NM_013437, intron 1 of 6) intron (NM_013437, intron 1 of 6) 4720 NM_001135703 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 538-260 chrX 44594603 44594939 + 2 NA Intergenic AluJo|SINE|Alu -51912 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 434-184 chr3 74592801 74593177 + 2 NA Intergenic Intergenic -71849 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 546-49 chr12 15625004 15625400 + 2 NA intron (NM_004447, intron 18 of 20) L2a|LINE|L2 78591 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 229-383 chr8 62556300 62556456 + 2 NA intron (NM_001304533, intron 1 of 6) L1MEd|LINE|L1 307524 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 573-175 chr7 8150116 8150501 + 2 NA intron (NM_001350838, intron 6 of 11) MIR|SINE|MIR 111744 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 275-246 chr3 67968761 67969029 + 2 NA Intergenic Intergenic -22697 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 339-39 chr1 211150287 211150493 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -16242 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 134-91 chr9 23711212 23711321 + 2 NA intron (NM_004432, intron 3 of 6) intron (NM_004432, intron 3 of 6) -38867 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 436-9 chr1 80453323 80453671 + 2 NA Intergenic Intergenic -82258 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 596-21 chr10 25510126 25510545 + 2 NA intron (NM_020752, intron 5 of 10) intron (NM_020752, intron 5 of 10) -141377 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 349-486 chr8 6114257 6114516 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 292162 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 214-127 chr17 52073272 52073460 + 2 NA intron (NM_001082533, intron 2 of 9) LTR81B|LTR|Gypsy 85348 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 228-95 chr14 57437701 57437906 + 2 NA Intergenic L1MA3|LINE|L1 47217 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 190-85 chr2 34421638 34421764 + 2 NA Intergenic Intergenic -255856 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 228-106 chr14 97975450 97975657 + 2 NA intron (NR_152748, intron 1 of 2) intron (NR_152748, intron 1 of 2) 2571 NR_152748 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 770-34 chr2 30879651 30880106 + 2 NA Intergenic Intergenic -72432 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 317-311 chr3 110400168 110400449 + 2 NA Intergenic L1M4|LINE|L1 669651 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 310-110 chr12 129441855 129442098 + 2 NA intron (NM_133448, intron 3 of 8) L1PA16|LINE|L1 233375 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 345-513 chr8 30409494 30409722 + 2 NA intron (NM_001008710, intron 1 of 8) intron (NM_001008710, intron 1 of 8) -24207 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 214-327 chr8 92013643 92013811 + 2 NA intron (NM_004349, intron 3 of 10) intron (NM_004349, intron 3 of 10) 3953 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 453-170 chr3 155226364 155226718 + 2 NA Intergenic Intergenic -14404 NR_125399 101928190 Hs.121410 NR_125399 ENSG00000241336 LINC01487 - long intergenic non-protein coding RNA 1487 ncRNA 250-189 chr2 15741674 15741899 + 2 NA Intergenic L1MD2|LINE|L1 51004 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 447-78 chr14 85086003 85086418 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -185722 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 348-146 chr14 76586882 76587204 + 2 NA Intergenic MIRb|SINE|MIR -174425 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 225-91 chr14 65976915 65977133 + 2 NA Intergenic Intergenic 505922 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 356-423 chr6 62865675 62865883 + 2 NA Intergenic SATR1|Satellite|Satellite 454198 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 254-393 chr7 136375833 136375983 + 2 NA Intergenic L1ME3G|LINE|L1 -398549 NM_001128619 767558 Hs.602015 NM_001128619 ENSG00000267697 LUZP6 MPD6|MTPNUT leucine zipper protein 6 protein-coding 315-260 chr2 148156511 148156724 + 2 NA intron (NM_018328, intron 2 of 14) L2c|LINE|L2 -135013 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 272-303 chr4 59655098 59655320 + 2 NA Intergenic Intergenic 641636 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 618-89 chr4 45637409 45638010 + 2 NA Intergenic L1PB4|LINE|L1 486345 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 360-445 chr7 120896780 120897035 + 2 NA Intergenic Intergenic -38763 NM_012338 23554 Hs.16529 NM_012338 ENSG00000106025 TSPAN12 EVR5|NET-2|NET2|TM4SF12 tetraspanin 12 protein-coding 301-433 chr8 5172232 5172416 + 2 NA Intergenic MIRc|SINE|MIR -177410 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 285-361 chr6 9457203 9457460 + 2 NA Intergenic Intergenic 805122 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 394-55 chr11 7447914 7448177 + 2 NA intron (NR_103855, intron 4 of 4) intron (NR_103855, intron 4 of 4) 17790 NR_103855 100506258 Hs.661614 NR_103855 ENSG00000251364 LOC100506258 - uncharacterized LOC100506258 ncRNA 235-239 chr3 149760004 149760198 + 2 NA Intergenic L1ME2|LINE|L1 -7602 NR_135149 51122 Hs.432729 NM_016094 ENSG00000114744 COMMD2 HSPC042 COMM domain containing 2 protein-coding 388-78 chr12 41999583 41999851 + 2 NA Intergenic L2c|LINE|L2 145157 NM_001099650 283464 Hs.259347 NM_173601 ENSG00000151233 GXYLT1 GLT8D3 glucoside xylosyltransferase 1 protein-coding 189-167 chr5 151805580 151805717 + 2 NA 3' UTR (NM_005754, exon 12 of 12) 3' UTR (NM_005754, exon 12 of 12) -33472 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 595-70 chr18 5753360 5753814 + 2 NA intron (NR_038839, intron 1 of 4) HAL1|LINE|L1 4768 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 150-13 chr10 59258669 59258815 + 2 NA intron (NM_001347845, intron 9 of 12) intron (NM_001347845, intron 9 of 12) 81275 NM_001143774 84457 Hs.499704 NM_032439 ENSG00000165443 PHYHIPL - phytanoyl-CoA 2-hydroxylase interacting protein like protein-coding 425-12 chr1 175662858 175663121 + 2 NA intron (NM_003285, intron 1 of 22) MIRb|SINE|MIR 80606 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 239-74 chr12 46362499 46362726 + 2 NA exon (NM_018976, exon 14 of 16) exon (NM_018976, exon 14 of 16) 10161 NM_001307936 54407 Hs.221847 NM_018976 ENSG00000134294 SLC38A2 ATA2|PRO1068|SAT2|SNAT2 solute carrier family 38 member 2 protein-coding 191-36 chr12 13303616 13303750 + 2 NA Intergenic Intergenic 73062 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 259-137 chr15 62197079 62197270 + 2 NA intron (NR_148210, intron 2 of 3) intron (NR_148210, intron 2 of 3) 6144 NR_148210 107984784 Hs.591131 NR_148210 ENSG00000259697 LOC107984784 - uncharacterized LOC107984784 ncRNA 229-96 chr12 110803335 110803539 + 2 NA Intergenic Intergenic -43550 NM_001286243 160762 Hs.437141 NM_152591 ENSG00000173093 CCDC63 ODA5 coiled-coil domain containing 63 protein-coding 293-263 chr3 74345284 74345452 + 2 NA intron (NM_020872, intron 10 of 21) L4_A_Mam|LINE|RTE-X 175772 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 397-265 chr5 131650273 131650606 + 2 NA intron (NM_133372, intron 16 of 17) L1MB4|LINE|L1 -15210 NM_001164390 51735 Hs.483329 NM_016340 ENSG00000158987 RAPGEF6 KIA001LB|PDZ-GEF2|PDZGEF2|RA-GEF-2|RAGEF2 Rap guanine nucleotide exchange factor 6 protein-coding 259-17 chr1 158909345 158909542 + 2 NA Intergenic L1MA8|LINE|L1 -22109 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 242-58 chr11 74501248 74501456 + 2 NA Intergenic L1MD|LINE|L1 -7628 NM_001144869 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 148-28 chr14 82984820 82984949 + 2 NA Intergenic HAL1b|LINE|L1 342252 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 306-322 chr3 106000541 106000724 + 2 NA Intergenic Intergenic -131231 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 170-37 chr12 78138594 78138714 + 2 NA intron (NM_001024383, intron 19 of 39) intron (NM_001024383, intron 19 of 39) 221092 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 265-38 chr10 78546889 78547111 + 2 NA Intergenic Intergenic 279658 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 284-71 chr11 43620750 43621004 + 2 NA Intergenic Intergenic 39483 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 520-209 chr4 35503862 35504350 + 2 NA Intergenic Intergenic 739833 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 282-168 chr17 62901373 62901574 + 2 NA Intergenic Intergenic -42742 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 345-35 chr1 195952967 195953285 + 2 NA Intergenic L2a|LINE|L2 135589 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 229-395 chr8 111130116 111130286 + 2 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) -102768 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 304-495 chr7 136596612 136596838 + 2 NA Intergenic Intergenic -271927 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 232-350 chr7 38144993 38145199 + 2 NA Intergenic L1MC|LINE|L1 -33149 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 349-298 chr21 18305574 18305765 + 2 NA intron (NM_002772, intron 18 of 24) intron (NM_002772, intron 18 of 24) 59794 NM_001204174 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 389-344 chr7 55531974 55532233 + 2 NA intron (NM_030796, intron 1 of 4) intron (NM_030796, intron 1 of 4) -5223 NM_001321251 81552 Hs.488307 NM_030796 ENSG00000154978 VOPP1 ECOP|GASP|WBP1L2 VOPP1 WW domain binding protein protein-coding 338-440 chr5 83750442 83750662 + 2 NA Intergenic L1M4|LINE|L1 -29697 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 884-44 chr7 19600807 19601445 + 2 NA Intergenic L1PA16|LINE|L1 104310 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 170-80 chr2 234667065 234667204 + 2 NA Intergenic Intergenic -15534 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 267-241 chr21 30550759 30550960 + 2 NA Intergenic L1PA15|LINE|L1 -8995 NM_181612 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 293-117 chr14 60314651 60314926 + 2 NA Intergenic Intergenic -8408 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 586-128 chr6 9852718 9853171 + 2 NA Intergenic L1PA15-16|LINE|L1 -551558 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 724-64 chr5 13926503 13927027 + 2 NA intron (NM_001369, intron 3 of 78) LTR78|LTR|ERV1 17715 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 464-152 chr21 29700819 29701200 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) -47166 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 209-325 chr8 100350456 100350630 + 2 NA Intergenic MIR3|SINE|MIR -14339 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 664-25 chr11 36201992 36202598 + 2 NA intron (NM_001304264, intron 4 of 5) AluSq2|SINE|Alu 87129 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 473-140 chr2 106322363 106322810 + 2 NA Intergenic Intergenic -47159 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 520-179 chr3 10614945 10615324 + 2 NA intron (NM_001353564, intron 1 of 20) L2|LINE|L2 4827 NM_001353564 491 Hs.268942 NM_001683 ENSG00000157087 ATP2B2 PMCA2|PMCA2a|PMCA2i ATPase plasma membrane Ca2+ transporting 2 protein-coding 359-297 chr21 31158906 31159182 + 2 NA intron (NM_001353690, intron 16 of 27) intron (NM_001353690, intron 16 of 27) 1896 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 309-156 chr14 65707392 65707637 + 2 NA intron (NR_038167, intron 7 of 8) L1M2|LINE|L1 236412 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 309-259 chr2 114218977 114219155 + 2 NA Intergenic Intergenic -223575 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 344-54 chr10 54913807 54914003 + 2 NA intron (NM_001354404, intron 3 of 34) MSTA-int|LTR|ERVL-MaLR -112614 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 237-22 chr1 186515256 186515426 + 2 NA Intergenic Intergenic -54227 NM_002597 5132 Hs.654381 NM_002597 ENSG00000116703 PDC MEKA|PHD|PhLOP|PhLP phosducin protein-coding 184-97 chr2 124002043 124002194 + 2 NA Intergenic Intergenic 23056 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 512-256 chr7 45282870 45283265 + 2 NA Intergenic L1MC3|LINE|L1 125276 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 261-311 chr5 64053370 64053544 + 2 NA Intergenic Intergenic -91165 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 396-352 chr8 87984233 87984531 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -110367 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 754-32 chr18 965944 966498 + 2 NA Intergenic MIRb|SINE|MIR -38228 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 323-110 chr12 30095876 30096090 + 2 NA Intergenic Intergenic -311224 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 439-214 chr4 121982749 121983033 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -30831 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 310-281 chr2 236232210 236232495 + 2 NA intron (NM_212556, intron 3 of 5) L1ME1|LINE|L1 31993 NM_212556 401036 Hs.639909 NM_212556 ENSG00000182177 ASB18 ASB-18 ankyrin repeat and SOCS box containing 18 protein-coding 327-539 chrX 73657404 73657607 + 2 NA intron (NM_001300884, intron 3 of 4) L1PA11|LINE|L1 94357 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 713-55 chr3 69570873 69571351 + 2 NA Intergenic Intergenic -168352 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 371-188 chr2 141994809 141995029 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 136782 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 333-376 chr4 10713718 10713898 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -29040 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 289-273 chr20 62108279 62108447 + 2 NA Intergenic AluSp|SINE|Alu -14112 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 271-83 chr12 2068216 2068414 + 2 NA intron (NM_199460, intron 1 of 49).2 intron (NM_199460, intron 1 of 49).2 15030 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 354-501 chr9 103656771 103657071 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -331888 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 445-276 chr8 115547922 115548240 + 2 NA intron (NM_001282902, intron 4 of 5) AluJb|SINE|Alu 119932 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 358-257 chr20 40528766 40529012 + 2 NA Intergenic Intergenic 160347 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 170-60 chr18 1173350 1173482 + 2 NA Intergenic Intergenic 186213 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 314-344 chr20 53980785 53980990 + 2 NA intron (NM_003657, intron 7 of 11) intron (NM_003657, intron 7 of 11) 78133 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 229-223 chr20 34945408 34945579 + 2 NA intron (NM_000178, intron 3 of 12) intron (NM_000178, intron 3 of 12) 10142 NM_001322495 2937 Hs.82327 NM_000178 ENSG00000100983 GSS GSHS|HEL-S-64p|HEL-S-88n glutathione synthetase protein-coding 361-173 chr17 67921445 67921681 + 2 NA intron (NM_182641, intron 13 of 27) intron (NM_182641, intron 13 of 27) 72043 NM_181655 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 228-114 chr15 76366973 76367103 + 2 NA intron (NR_148227, intron 30 of 32) intron (NR_148227, intron 30 of 32) 30265 NM_145805 64843 Hs.444677 NM_145805 ENSG00000159556 ISL2 - ISL LIM homeobox 2 protein-coding 298-131 chr14 101083345 101083628 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 13575 NR_047664 100507257 Hs.301755 NR_047664 ENSG00000223403 MEG9 LINC00584 maternally expressed 9 ncRNA 402-360 chr8 142302735 142302966 + 2 NA intron (NM_001366903, intron 9 of 9) intron (NM_001366903, intron 9 of 9) 100332 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 282-167 chr17 60926799 60926995 + 2 NA intron (NM_001330413, intron 13 of 25) intron (NM_001330413, intron 13 of 25) 249046 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 233-223 chr3 4601865 4602074 + 2 NA intron (NM_001168272, intron 4 of 60) L1MB7|LINE|L1 108621 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 305-491 chr7 3156053 3156246 + 2 NA intron (NR_126024, intron 2 of 3) AluJb|SINE|Alu 2424 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 373-311 chr5 15010364 15010579 + 2 NA Intergenic (ATA)n|Simple_repeat|Simple_repeat -138693 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 340-562 chr8 142037946 142038261 + 2 NA Intergenic Intergenic -138236 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 364-371 chr5 179531785 179532126 + 2 NA intron (NR_131066, intron 3 of 5) intron (NR_131066, intron 3 of 5) 9498 NR_131066 285679 Hs.558748 NM_001013718 ENSG00000204661 C5orf60 - chromosome 5 open reading frame 60 protein-coding 250-442 chr8 121757111 121757277 + 2 NA Intergenic MIR|SINE|MIR -115754 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 343-379 chr4 35330242 35330572 + 2 NA Intergenic Intergenic 913532 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 295-153 chr15 69973507 69973672 + 2 NA Intergenic Intergenic 105879 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 319-239 chr2 63816717 63816897 + 2 NA Intergenic L1ME2|LINE|L1 -24157 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 329-540 chr7 62656038 62656271 + 2 NA Intergenic ALR/Alpha|Satellite|centr 647902 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 429-252 chr6 44394103 44394472 + 2 NA intron (NM_001253, intron 4 of 15) intron (NM_001253, intron 4 of 15) 6581 NM_001253 988 Hs.485471 NM_001253 ENSG00000096401 CDC5L CDC5|CDC5-LIKE|CEF1|PCDC5RP|dJ319D22.1 cell division cycle 5 like protein-coding 327-3 chr1 42128610 42128900 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy -24655 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 299-460 chr8 114674873 114675114 + 2 NA Intergenic Intergenic 993020 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 377-2 chr1 14476679 14476884 + 2 NA Intergenic L2b|LINE|L2 -56808 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 205-61 chr11 114825034 114825171 + 2 NA Intergenic Intergenic 146575 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 369-6 chr1 56926735 56926972 + 2 NA Intergenic Intergenic 39162 NM_000066 732 Hs.391835 NM_000066 ENSG00000021852 C8B C82 complement C8 beta chain protein-coding 311-414 chr5 103367246 103367508 + 2 NA Intergenic LTR18B|LTR|ERVL 107953 NM_001316968 90355 Hs.482976 NM_033211 ENSG00000181751 C5orf30 - chromosome 5 open reading frame 30 protein-coding 513-293 chr9 2348637 2348984 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 190354 NM_001289400 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 383-208 chr2 187793618 187793882 + 2 NA Intergenic L1M4|LINE|L1 -239245 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 345-356 chr3 103095091 103095428 + 2 NA Intergenic L1MB8|LINE|L1 428857 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 242-247 chr3 169009730 169009926 + 2 NA Intergenic L1MD2|LINE|L1 107883 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 495-176 chr4 60284684 60285102 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -637726 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 271-252 chr22 40724043 40724250 + 2 NA Intergenic Intergenic 44968 NM_005297 2847 Hs.248122 NM_005297 ENSG00000128285 MCHR1 GPR24|MCH-1R|MCH1R|SLC-1|SLC1 melanin concentrating hormone receptor 1 protein-coding 263-107 chr14 53805936 53806139 + 2 NA Intergenic Intergenic 142447 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 648-24 chr12 25571687 25572042 + 2 NA intron (NM_001352234, intron 1 of 8) AluSz6|SINE|Alu -18581 NM_001145728 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 265-149 chr18 10456258 10456518 + 2 NA intron (NM_153000, intron 1 of 4) intron (NM_153000, intron 1 of 4) 1753 NM_153000 147495 Hs.293274 NM_153000 ENSG00000154856 APCDD1 B7323|DRAPC1|FP7019|HHS|HTS|HYPT1 APC down-regulated 1 protein-coding 314-417 chr4 45087170 45087355 + 2 NA Intergenic Intergenic -360628 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 361-60 chr10 123477465 123477690 + 2 NA Intergenic Intergenic -188778 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 330-420 chr5 45781592 45781857 + 2 NA Intergenic LTR40c|LTR|ERVL -85344 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 571-137 chr5 75945117 75945501 + 2 NA Intergenic L1MEf|LINE|L1 -138074 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 351-269 chr21 19989196 19989382 + 2 NA Intergenic L1MC3|LINE|L1 -89534 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 331-463 chr6 88290932 88291193 + 2 NA Intergenic L1MDa|LINE|L1 -123713 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 352-14 chr1 71897464 71897673 + 2 NA intron (NM_173808, intron 2 of 6) intron (NM_173808, intron 2 of 6) -60556 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 393-71 chr12 38012446 38012749 + 2 NA Intergenic ALR/Alpha|Satellite|centr -304177 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 449-94 chr16 61683804 61684233 + 2 NA intron (NM_001796, intron 10 of 11) intron (NM_001796, intron 10 of 11) 352420 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 341-258 chr2 102824994 102825210 + 2 NA Intergenic Intergenic 63071 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 305-375 chr4 34011400 34011637 + 2 NA intron (NR_125902, intron 1 of 4) intron (NR_125902, intron 1 of 4) 28375 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 380-185 chr2 102343704 102343956 + 2 NA non-coding (NR_104167, exon 9 of 9) non-coding (NR_104167, exon 9 of 9) 6573 NR_104167 9173 Hs.66 NM_003856 ENSG00000115602 IL1RL1 DER4|FIT-1|IL33R|ST2|ST2L|ST2V|T1 interleukin 1 receptor like 1 protein-coding 319-183 chr16 80964417 80964665 + 2 NA Intergenic L1MC5a|LINE|L1 33135 NM_001351973 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 355-155 chr14 59674387 59674612 + 2 NA intron (NM_021136, intron 3 of 8) intron (NM_021136, intron 3 of 8) -27479 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 298-287 chr3 22365818 22366096 + 2 NA Intergenic Intergenic 408818 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 450-325 chr9 92988289 92988697 + 2 NA intron (NM_001369952, intron 3 of 16) MER50|LTR|ERV1 14024 NM_001369952 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 317-301 chr3 59786884 59787126 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -128508 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 244-339 chr7 20296133 20296361 + 2 NA promoter-TSS (NR_110117) promoter-TSS (NR_110117) -461 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 497-21 chr10 64867141 64867587 + 2 NA Intergenic MER61E|LTR|ERV1 41836 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 229-263 chr3 161134207 161134381 + 2 NA Intergenic L1MA5|LINE|L1 -28922 NM_001349159 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 302-288 chr3 85964880 85965162 + 2 NA intron (NM_001256504, intron 9 of 10) intron (NM_001256504, intron 9 of 10) -136971 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 271-22 chr1 180731101 180731243 + 2 NA intron (NR_137330, intron 2 of 12) MER33|DNA|hAT-Charlie 99150 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 150-4 chr1 109362465 109362595 + 2 NA intron (NM_001205228, intron 3 of 19) intron (NM_001205228, intron 3 of 19) 30827 NM_001205228 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 603-96 chr20 11549358 11549774 + 2 NA Intergenic Intergenic -276183 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 507-85 chr14 66575597 66576044 + 2 NA intron (NM_001024218, intron 1 of 21) L1M3e|LINE|L1 68413 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 453-194 chr5 8298172 8298461 + 2 NA Intergenic Intergenic 159248 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 551-34 chr11 92538694 92539043 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 186772 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 335-214 chr18 62679983 62680283 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR -35408 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 430-11 chr1 157165757 157166074 + 2 NA Intergenic Intergenic -27324 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 932-11 chr3 1919658 1920261 + 2 NA Intergenic Intergenic -178844 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 224-201 chr3 69447452 69447632 + 2 NA Intergenic L1ME1|LINE|L1 -61454 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 517-65 chr13 36585838 36586292 + 2 NA Intergenic Intergenic -87955 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 207-138 chr2 62704169 62704320 + 2 NA intron (NM_001142615, intron 1 of 22) intron (NM_001142615, intron 1 of 22) -1380 NM_001354212 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 284-341 chr6 24065648 24065851 + 2 NA Intergenic Intergenic -60466 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 311-490 chr8 33941783 33942067 + 2 NA Intergenic MIRc|SINE|MIR -341819 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 629-59 chr2 44637715 44638178 + 2 NA intron (NM_024766, intron 3 of 10) AluSc|SINE|Alu 275999 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 542-119 chr20 40237154 40237599 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 232915 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 517-226 chr5 155499612 155499978 + 2 NA Intergenic Intergenic 486040 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 465-51 chr11 63046931 63047361 + 2 NA Intergenic Intergenic -31301 NM_001184736 9376 Hs.266223 NM_004254 ENSG00000149452 SLC22A8 OAT3 solute carrier family 22 member 8 protein-coding 342-307 chr3 20757297 20757490 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 414925 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 455-242 chr6 65241628 65241970 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -59619 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 392-28 chr10 56546545 56546875 + 2 NA Intergenic Intergenic -185437 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 329-78 chr10 108288132 108288318 + 2 NA Intergenic Intergenic -218932 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 340-474 chr6 45623555 45623749 + 2 NA Intergenic L2a|LINE|L2 201377 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 249-8 chr1 63736673 63736873 + 2 NA Intergenic L1MA3|LINE|L1 -37244 NM_005012 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 386-94 chr14 49150338 49150677 + 2 NA Intergenic Intergenic 435873 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 250-180 chr18 77231346 77231573 + 2 NA Intergenic Intergenic -18389 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 355-536 chr9 90360584 90360924 + 2 NA intron (NR_109795, intron 2 of 2) L1MD1|LINE|L1 72735 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 200-76 chr14 59357046 59357203 + 2 NA intron (NM_001270520, intron 20 of 24) intron (NM_001270520, intron 20 of 24) 93683 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 224-6 chr1 38749036 38749231 + 2 NA Intergenic L2c|LINE|L2 110639 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 199-136 chr20 4845022 4845158 + 2 NA Intergenic L1MEj|LINE|L1 -21482 NM_014737 9770 Hs.631504 NM_014737 ENSG00000101265 RASSF2 CENP-34|RASFADIN Ras association domain family member 2 protein-coding 572-163 chr7 111184147 111184548 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 93220 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 405-269 chr6 15502229 15502569 + 2 NA intron (NM_004973, intron 8 of 17) intron (NM_004973, intron 8 of 17) 160629 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 330-154 chr14 50013178 50013443 + 2 NA intron (NR_131171, intron 6 of 8) intron (NR_131171, intron 6 of 8) -5790 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 529-227 chr8 135479119 135479557 + 2 NA intron (NM_006558, intron 1 of 8) L1M4|LINE|L1 21882 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 624-74 chr20 11244937 11245382 + 2 NA Intergenic Intergenic 28224 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 634-101 chr3 41205354 41205824 + 2 NA intron (NM_001904, intron 1 of 14) AluSx1|SINE|Alu 6084 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 244-178 chr2 178914497 178914703 + 2 NA intron (NM_001316745, intron 7 of 11) intron (NM_001316745, intron 7 of 11) -107177 NM_133432 7273 Hs.134602 NM_003319 ENSG00000155657 TTN CMD1G|CMH9|CMPD4|EOMFC|HMERF|LGMD2J|LGMDR10|MYLK5|SALMY|TMD titin protein-coding 287-139 chr14 83057942 83058101 + 2 NA Intergenic MER66D|LTR|ERV1 415389 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 372-470 chr8 34318667 34319002 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -465087 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 260-460 chr9 93738944 93739121 + 2 NA Intergenic L1MEc|LINE|L1 -80325 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 118-37 chr4 19486670 19486784 + 2 NA Intergenic MER20|DNA|hAT-Charlie -765178 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 292-197 chr19 36908824 36909068 + 2 NA intron (NM_001037232, intron 3 of 5) HAL1|LINE|L1 7093 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 160-100 chr6 161317627 161317756 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -43630 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 318-180 chr15 56237205 56237393 + 2 NA intron (NM_001370561, intron 4 of 11) intron (NM_001370561, intron 4 of 11) 6580 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 279-346 chr5 147939618 147939803 + 2 NA Intergenic L1M1|LINE|L1 -33172 NM_206966 389336 Hs.660038 NM_206966 ENSG00000178776 C5orf46 SSSP1 chromosome 5 open reading frame 46 protein-coding 405-145 chr2 98261111 98261458 + 2 NA intron (NM_001345864, intron 15 of 21) L1MB5|LINE|L1 -84871 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 213-204 chr4 61854382 61854542 + 2 NA intron (NM_001371343, intron 9 of 23) L1MC3|LINE|L1 307303 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 164-16 chr10 84673305 84673419 + 2 NA Intergenic Intergenic 248193 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 625-88 chr5 145424633 145425055 + 2 NA Intergenic L1PA11|LINE|L1 410498 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 259-438 chrX 5022771 5022973 + 2 NA Intergenic Intergenic -389300 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 383-89 chr12 124094746 124095094 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 121705 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 298-514 chrX 69373784 69374073 + 2 NA Intergenic L2a|LINE|L2 -131307 NM_015686 27112 Hs.87619 NM_015686 ENSG00000130054 FAM155B CXorf63|TED|TMEM28|bB57D9.1 family with sequence similarity 155 member B protein-coding 273-141 chr14 87087793 87087961 + 2 NA Intergenic L2a|LINE|L2 182099 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 430-129 chr18 67057828 67058249 + 2 NA Intergenic LTR41B|LTR|ERVL -23546 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 274-78 chr11 81729083 81729252 + 2 NA Intergenic L1MB8|LINE|L1 161669 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 274-2 chr1 45130873 45131144 + 2 NA intron (NM_020883, intron 1 of 13) L1MD1|LINE|L1 75597 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 301-252 chr20 41750877 41751064 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -132593 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 164-73 chr3 22107424 22107583 + 2 NA Intergenic Intergenic 150364 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 693-45 chr18 1647329 1647881 + 2 NA Intergenic Intergenic -287976 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 321-600 chr9 82591903 82592129 + 2 NA Intergenic Intergenic 471126 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 316-154 chr13 48838959 48839217 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -136824 NM_001079673 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 415-294 chr8 130499340 130499647 + 2 NA Intergenic Intergenic -55819 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 271-41 chr10 35747198 35747365 + 2 NA Intergenic Intergenic -31021 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 359-155 chr15 60379535 60379847 + 2 NA intron (NM_001002857, intron 4 of 13) MIRb|SINE|MIR 18295 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 416-81 chr11 131142705 131143075 + 2 NA Intergenic Intergenic -226403 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 374-207 chr2 180469798 180470086 + 2 NA Intergenic L1MB1|LINE|L1 -222162 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 390-408 chr9 24252946 24253269 + 2 NA Intergenic L1M4|LINE|L1 292569 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 485-98 chr16 75178078 75178509 + 2 NA Intergenic L1MA8|LINE|L1 28868 NM_001025200 440387 Hs.610926 NM_001025200 ENSG00000168928 CTRB2 - chymotrypsinogen B2 protein-coding 309-117 chr12 115586268 115586437 + 2 NA Intergenic L1ME1|LINE|L1 562302 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 316-328 chr20 59378362 59378627 + 2 NA Intergenic L3b|LINE|CR1 77883 NM_001302455 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 305-463 chr6 24182277 24182520 + 2 NA intron (NM_016356, intron 8 of 9) L1MB3|LINE|L1 56183 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 376-158 chr18 76372559 76372859 + 2 NA intron (NM_014643, intron 4 of 6) intron (NM_014643, intron 4 of 6) -118943 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 215-239 chr4 138809061 138809251 + 2 NA Intergenic Intergenic 203490 NR_133945 105377448 Hs.200280 NR_133945 ENSG00000250195 LOC105377448 - uncharacterized LOC105377448 ncRNA 583-135 chr5 30306096 30306523 + 2 NA Intergenic Intergenic 425749 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 383-27 chr1 240380982 240381322 + 2 NA intron (NM_020066, intron 14 of 17) L1PB4|LINE|L1 231003 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 432-47 chr11 84573262 84573682 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 147470 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 309-89 chr11 104110561 104110751 + 2 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 53491 NM_025208 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 509-131 chr21 14200956 14201381 + 2 NA intron (NM_001303000, intron 1 of 9) L1PA13|LINE|L1 5781 NM_198996 149998 Hs.139907 NM_145317 ENSG00000188992 LIPI CT17|LPDL|PLA1C|PRED5|mPA-PLA1 beta lipase I protein-coding 366-386 chr6 144951023 144951386 + 2 NA Intergenic Intergenic 545549 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 285-440 chr8 138139824 138140059 + 2 NA intron (NM_015912, intron 17 of 19) intron (NM_015912, intron 17 of 19) -56396 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 320-553 chr8 90420139 90420311 + 2 NA Intergenic Intergenic 185838 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 321-63 chr10 60190198 60190368 + 2 NA intron (NM_001204403, intron 17 of 43) intron (NM_001204403, intron 17 of 43) -49267 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 237-68 chr12 14349289 14349428 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -16274 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 330-297 chr2 155093508 155093729 + 2 NA Intergenic Intergenic 394923 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 321-586 chr8 141712953 141713162 + 2 NA Intergenic Intergenic 73256 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 354-24 chr1 177555913 177556143 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -144496 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 333-328 chr22 26297353 26297578 + 2 NA intron (NM_001184776, intron 4 of 14) Charlie4a|DNA|hAT-Charlie 127991 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 347-420 chr5 161501068 161501279 + 2 NA intron (NM_000813, intron 4 of 9) intron (NM_000813, intron 4 of 9) 46951 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 267-108 chr14 57907602 57907800 + 2 NA Intergenic L2a|LINE|L2 -41609 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 210-53 chr12 13170367 13170569 + 2 NA Intergenic Intergenic -26258 NM_001423 2012 Hs.719042 NM_001423 ENSG00000134531 EMP1 CL-20|EMP-1|TMP epithelial membrane protein 1 protein-coding 303-435 chr7 110704609 110704797 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -386303 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 268-132 chr15 83409778 83410044 + 2 NA Intergenic L1ME2|LINE|L1 -37317 NR_125370 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 549-145 chr3 102873390 102873858 + 2 NA Intergenic Intergenic 438609 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 264-140 chr15 35803950 35804204 + 2 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -122779 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 703-23 chr11 133614627 133615322 + 2 NA Intergenic Intergenic -82473 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 533-139 chr3 112954918 112955333 + 2 NA intron (NM_138806, intron 1 of 7) MER21B|LTR|ERVL 19978 NM_138940 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 198-57 chr13 73672110 73672240 + 2 NA Intergenic Intergenic 107931 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 277-456 chrX 42999584 42999825 + 2 NA Intergenic Intergenic -177290 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 452-14 chr1 178953376 178953775 + 2 NA Intergenic Intergenic -72229 NM_001324310 9917 Hs.5737 NM_014864 ENSG00000116199 FAM20B gxk1 FAM20B glycosaminoglycan xylosylkinase protein-coding 303-17 chr1 191983966 191984145 + 2 NA Intergenic Intergenic -174407 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 363-316 chr4 36226226 36226489 + 2 NA intron (NR_146894, intron 2 of 32) MER34|LTR|ERV1 17582 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 134-79 chr6 135523320 135523436 + 2 NA intron (NR_152845, intron 2 of 4) intron (NR_152845, intron 2 of 4) 25577 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 244-165 chr2 75338691 75338900 + 2 NA Intergenic Helitron1Na_Mam|RC|Helitron -139275 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 425-144 chr2 124190197 124190466 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 165044 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 243-211 chr2 79508831 79508960 + 2 NA Intergenic Intergenic -4039 NM_001164883 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 236-300 chr6 40499032 40499193 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 88252 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 352-353 chr4 37115107 37115325 + 2 NA Intergenic Intergenic 113437 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 296-386 chr5 155270574 155270807 + 2 NA Intergenic Intergenic 256935 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 273-174 chr17 70033686 70033870 + 2 NA Intergenic Intergenic -17493 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 333-430 chr5 10033130 10033333 + 2 NA Intergenic Intergenic -129407 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 348-49 chr10 43620724 43620951 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -7980 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 767-30 chr21 21595680 21596108 + 2 NA Intergenic Intergenic 141425 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 288-419 chr7 104530982 104531178 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 202424 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 225-190 chr22 32970606 32970751 + 2 NA intron (NM_003490, intron 3 of 13) intron (NM_003490, intron 3 of 13) 36143 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 440-186 chr4 170375633 170376040 + 2 NA Intergenic L1PA15-16|LINE|L1 149245 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 405-8 chr1 83092445 83092776 + 2 NA intron (NR_147074, intron 7 of 10) intron (NR_147074, intron 7 of 10) -106402 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 524-148 chr3 7437045 7437391 + 2 NA intron (NM_000844, intron 5 of 9) MIR|SINE|MIR 98066 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 343-185 chr16 59788559 59788802 + 2 NA Intergenic L1MC3|LINE|L1 -33489 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 247-273 chr3 118505345 118505518 + 2 NA Intergenic Intergenic -136337 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 334-119 chr12 119436050 119436242 + 2 NA intron (NM_178499, intron 2 of 13) MLT1H|LTR|ERVL-MaLR 101417 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 140-15 chr11 64608449 64608534 + 2 NA intron (NM_015080, intron 22 of 22) (T)n|Simple_repeat|Simple_repeat 17271 NM_001276326 116085 Hs.174424 NM_144585 ENSG00000197891 SLC22A12 OAT4L|RST|URAT1 solute carrier family 22 member 12 protein-coding 602-65 chr2 128705395 128705821 + 2 NA Intergenic L1M4b|LINE|L1 -158992 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 327-291 chr20 7351855 7352033 + 2 NA intron (NR_110610, intron 1 of 2) intron (NR_110610, intron 1 of 2) 4511 NR_110610 101929312 Hs.559354 NR_110610 LINC01706 - long intergenic non-protein coding RNA 1706 ncRNA 326-170 chr15 63104356 63104566 + 2 NA Intergenic Intergenic -17400 NM_171846 114294 Hs.410388 NM_032857 ENSG00000103642 LACTB G24|MRPL56 lactamase beta protein-coding 316-335 chr22 30971769 30971942 + 2 NA intron (NR_152870, intron 1 of 2) L2c|LINE|L2 2644 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 645-31 chr14 60408296 60408761 + 2 NA Intergenic L1PA10|LINE|L1 77535 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 317-531 chr9 86586348 86586573 + 2 NA Intergenic Intergenic -232050 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 270-162 chr18 37936930 37937140 + 2 NA Intergenic Intergenic 279900 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 232-377 chr8 92181060 92181225 + 2 NA Intergenic L1MEi|LINE|L1 -77757 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 367-301 chr3 172882252 172882595 + 2 NA Intergenic Intergenic 131421 NM_001349100 1894 Hs.518299 NM_018098 ENSG00000114346 ECT2 ARHGEF31 epithelial cell transforming 2 protein-coding 481-175 chr20 41668169 41668518 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -49966 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 410-226 chr4 150741421 150741698 + 2 NA intron (NM_001367550, intron 35 of 56) L1ME3A|LINE|L1 159408 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 287-415 chr8 116138684 116138851 + 2 NA intron (NR_046215, intron 4 of 13) L2|LINE|L2 186292 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 307-411 chr6 1207210 1207448 + 2 NA Intergenic Intergenic -104769 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 301-77 chr11 97250004 97250180 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 741667 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 305-458 chr5 165951491 165951691 + 2 NA Intergenic Intergenic 974779 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 362-86 chr11 25129005 25129285 + 2 NA Intergenic L1MC1|LINE|L1 632092 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 249-93 chr12 51613294 51613506 + 2 NA intron (NM_001369788, intron 1 of 25) L1ME1|LINE|L1 22164 NM_001177984 6334 Hs.436550 NM_014191 ENSG00000196876 SCN8A BFIS5|CERIII|CIAT|EIEE13|MED|MYOCL2|NaCh6|Nav1.6|PN4 sodium voltage-gated channel alpha subunit 8 protein-coding 365-277 chr4 19646632 19646909 + 2 NA Intergenic Intergenic -605135 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 297-174 chr17 65596433 65596585 + 2 NA Intergenic AluSz|SINE|Alu -34861 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 643-80 chr4 438986 439352 + 2 NA TTS (NM_133474) TTS (NM_133474) 35040 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 172-93 chr4 74592343 74592469 + 2 NA Intergenic L1MC|LINE|L1 147270 NM_001657 374 Hs.270833 NM_001657 ENSG00000109321 AREG AR|AREGB|CRDGF|SDGF amphiregulin protein-coding 405-312 chr7 158960652 158960863 + 2 NA Intergenic Intergenic -47597 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 396-328 chr7 34256137 34256388 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 350723 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 361-112 chr12 75374606 75374921 + 2 NA intron (NM_001355033, intron 1 of 14) HERVL-int|LTR|ERVL 16138 NR_149161 84698 Hs.733835 NM_032606 ENSG00000180881 CAPS2 UG0636c06 calcyphosine 2 protein-coding 172-82 chr3 105900686 105900816 + 2 NA Intergenic L1ME4b|LINE|L1 -31350 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 461-17 chr1 187763258 187763548 + 2 NA Intergenic Intergenic 319775 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 426-51 chr11 98398508 98398855 + 2 NA Intergenic Intergenic -622268 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 609-51 chr2 12465310 12465761 + 2 NA intron (NR_110196, intron 4 of 5) intron (NR_110196, intron 4 of 5) -251337 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 556-135 chr21 21904208 21904736 + 2 NA Intergenic Intergenic 157487 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 285-279 chr3 113081616 113081855 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -62064 NM_001319112 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 204-190 chr3 15951824 15951937 + 2 NA Intergenic LTR24C|LTR|ERV1 78109 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 345-515 chr8 50388059 50388371 + 2 NA intron (NR_135797, intron 2 of 20) ERVL-B4-int|LTR|ERVL 224084 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 835-39 chr3 178468880 178469456 + 2 NA Intergenic AluSc|SINE|Alu 49967 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 341-158 chr15 25075148 25075367 + 2 NA promoter-TSS (NR_003326) promoter-TSS (NR_003326) -671 NR_003326 100033423 NR_003326 ENSG00000206609 SNORD116-11 HBII-85-11 small nucleolar RNA, C/D box 116-11 snoRNA 237-34 chr10 71702663 71702857 + 2 NA intron (NM_022124, intron 23 of 67) intron (NM_022124, intron 23 of 67) 17018 NM_001164375 414152 Hs.568788 NM_001164375 ENSG00000214688 C10orf105 - chromosome 10 open reading frame 105 protein-coding 395-252 chr4 85234615 85234817 + 2 NA Intergenic LTR78B|LTR|ERV1 -240434 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 357-133 chr15 88087141 88087389 + 2 NA intron (NM_001007156, intron 13 of 15) intron (NM_001007156, intron 13 of 15) 118709 NM_001320135 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 379-341 chr8 82644451 82644781 + 2 NA Intergenic L1MEc|LINE|L1 -267488 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 216-37 chr10 65876703 65876872 + 2 NA Intergenic AluSx|SINE|Alu 305362 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 285-169 chr18 65142462 65142668 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -607687 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 653-44 chr14 99236002 99236442 + 2 NA intron (NM_001282237, intron 2 of 3) intron (NM_001282237, intron 2 of 3) 35975 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 535-50 chr12 44271229 44271529 + 2 NA intron (NM_001286213, intron 4 of 6) intron (NM_001286213, intron 4 of 6) 435298 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 297-276 chr21 34220900 34221163 + 2 NA Intergenic Intergenic 40354 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 208-266 chr8 117509533 117509664 + 2 NA Intergenic L1ME1|LINE|L1 -11115 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 456-339 chr9 75904605 75904923 + 2 NA intron (NR_120409, intron 1 of 19) L1MB8|LINE|L1 14091 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 243-242 chr2 188837162 188837377 + 2 NA Intergenic L1MA8|LINE|L1 -47146 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 348-365 chr4 69086497 69086750 + 2 NA intron (NM_001349568, intron 1 of 6) L1M1|LINE|L1 -9851 NM_001074 7364 Hs.654424 NM_001074 ENSG00000171234 UGT2B7 UDPGT 2B7|UDPGT 2B9|UDPGT2B7|UDPGTH2|UDPGTh-2|UGT2B9 UDP glucuronosyltransferase family 2 member B7 protein-coding 245-205 chr2 162831097 162831291 + 2 NA intron (NM_033272, intron 2 of 15) MIR|SINE|MIR 7573 NM_033272 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 294-249 chr2 216878628 216878885 + 2 NA Intergenic LTR16E1|LTR|ERVL 7984 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 545-216 chr7 7402307 7402676 + 2 NA intron (NM_001037763, intron 27 of 34) intron (NM_001037763, intron 27 of 34) 133382 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 339-156 chr14 53601398 53601721 + 2 NA Intergenic MIRb|SINE|MIR 346925 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 253-288 chr4 32281965 32282194 + 2 NA Intergenic Intergenic -68959 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 894-2 chr1 60544624 60545135 + 2 NA intron (NR_146508, intron 4 of 7) intron (NR_146508, intron 4 of 7) 77806 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 299-455 chr8 98950720 98950893 + 2 NA intron (NM_053001, intron 3 of 3) intron (NM_053001, intron 3 of 3) 6364 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 185-55 chr13 112149545 112149696 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 11090 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 674-103 chr8 127442999 127443477 + 2 NA TTS (NR_024393) TTS (NR_024393) 27413 NM_001159542 5462 Hs.450254 NM_001159542 ENSG00000212993 POU5F1B OCT4-PG1|OCT4PG1|OTF3C|OTF3P1|POU5F1P1|POU5F1P4|POU5FLC20|POU5FLC8 POU class 5 homeobox 1B protein-coding 305-13 chr1 73166375 73166555 + 2 NA Intergenic Intergenic -139705 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 254-200 chr2 163906690 163906853 + 2 NA Intergenic L1MB7|LINE|L1 -170763 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 267-412 chr8 36922323 36922480 + 2 NA intron (NM_001031836, intron 23 of 26) intron (NM_001031836, intron 23 of 26) 138027 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 199-200 chr5 68474268 68474424 + 2 NA Intergenic Intergenic 181769 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 234-213 chr20 43066000 43066172 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 97343 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 417-151 chr2 124086907 124087267 + 2 NA intron (NM_130773, intron 1 of 23) L1MD1|LINE|L1 61800 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 449-260 chr7 106715794 106716091 + 2 NA Intergenic Intergenic -54784 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 301-386 chr5 178713740 178713972 + 2 NA intron (NM_005649, intron 4 of 4) intron (NM_005649, intron 4 of 4) 16803 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 414-133 chr18 13318550 13318936 + 2 NA intron (NM_181482, intron 2 of 5) (TGTC)n|Simple_repeat|Simple_repeat 40638 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 501-13 chr1 180997468 180997802 + 2 NA intron (NM_001286210, intron 1 of 5) Charlie5|DNA|hAT-Charlie 25235 NM_005819 10228 Hs.518417 NM_005819 ENSG00000135823 STX6 - syntaxin 6 protein-coding 309-102 chr12 37609031 37609255 + 2 NA Intergenic ALR/Alpha|Satellite|centr -707631 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 313-95 chr11 111338707 111338971 + 2 NA Intergenic L1ME2z|LINE|L1 -8918 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 316-347 chr3 65297782 65298009 + 2 NA Intergenic (CTTG)n|Simple_repeat|Simple_repeat -595921 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 381-9 chr1 90881262 90881538 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 29641 NR_146610 105378854 Hs.606283 NR_146610 LINC01763 - long intergenic non-protein coding RNA 1763 ncRNA 227-376 chr8 117242824 117243028 + 2 NA Intergenic MIR|SINE|MIR 107931 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 472-268 chr6 49367934 49368227 + 2 NA Intergenic Intergenic 95173 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 200-42 chr11 21015603 21015757 + 2 NA intron (NM_201551, intron 12 of 18) intron (NM_201551, intron 12 of 18) 346094 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 271-13 chr1 92528533 92528793 + 2 NA intron (NM_001350198, intron 19 of 19) L1ME3A|LINE|L1 -41738 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 452-32 chr10 66194561 66194912 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 623311 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 480-253 chr6 80358311 80358668 + 2 NA Intergenic L1MB5|LINE|L1 251818 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 606-58 chr16 36173642 36174050 + 2 NA Intergenic Intergenic 427294 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 263-431 chr8 131695005 131695151 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -209015 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 595-89 chr2 129636646 129637178 + 2 NA Intergenic Intergenic 240579 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 312-482 chr7 44943433 44943630 + 2 NA Intergenic L1MC2|LINE|L1 35484 NM_033054 64005 Hs.37617 NM_033054 ENSG00000136286 MYO1G HA2|HLA-HA2|MHAG myosin IG protein-coding 162-123 chr7 84249167 84249289 + 2 NA Intergenic Intergenic -54439 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 289-136 chr14 41971191 41971401 + 2 NA Intergenic L1MC3|LINE|L1 364440 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 372-275 chr2 239546724 239546981 + 2 NA Intergenic LTR16A1|LTR|ERVL 145104 NR_135577 101928111 Hs.534680 NR_135575 ENSG00000222020 HDAC4-AS1 - HDAC4 antisense RNA 1 ncRNA 355-102 chr11 94287345 94287533 + 2 NA Intergenic Intergenic -18198 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 152-11 chr10 73305763 73305857 + 2 NA intron (NM_001367801, intron 13 of 27) L1M4|LINE|L1 52944 NM_001350934 118491 Hs.591367 NM_145170 ENSG00000156042 CFAP70 TTC18 cilia and flagella associated protein 70 protein-coding 498-101 chr16 77457646 77457991 + 2 NA Intergenic Intergenic -22784 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 459-123 chr19 34570845 34571245 + 2 NA Intergenic AluSp|SINE|Alu 23540 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 359-283 chr20 24362449 24362728 + 2 NA Intergenic LTR16C|LTR|ERVL -106611 NM_001323606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 420-154 chr2 160870695 160870999 + 2 NA Intergenic HAL1|LINE|L1 -266108 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 542-15 chr1 238001350 238001725 + 2 NA Intergenic Intergenic -110615 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 539-210 chr8 127609250 127609746 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 124469 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 406-75 chr14 45923914 45924266 + 2 NA Intergenic L1ME1|LINE|L1 -140069 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 340-444 chr5 53515735 53516018 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 35247 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 311-57 chr10 76719822 76720021 + 2 NA Intergenic Intergenic -168123 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 450-52 chr11 88156951 88157301 + 2 NA intron (NM_022337, intron 1 of 2) L1PA16|LINE|L1 18317 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 314-170 chr14 53992440 53992737 + 2 NA Intergenic Intergenic -35697 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 451 chr1 14089145 14089422 + 2 NA Intergenic L1ME1|LINE|L1 330690 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 331-168 chr14 90041097 90041376 + 2 NA intron (NM_001008744, intron 15 of 15) intron (NM_001008744, intron 15 of 15) -20758 NM_022054 56659 Hs.510191 NM_022054 ENSG00000152315 KCNK13 K2p13.1|THIK-1|THIK1 potassium two pore domain channel subfamily K member 13 protein-coding 114-61 chr8 79250138 79250220 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -82009 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 533-44 chr12 133106528 133106901 + 2 NA 3' UTR (NM_001300776, exon 4 of 4) 3' UTR (NM_001300776, exon 4 of 4) 23759 NM_001277291 101060200 Hs.614816 NM_001277291 ENSG00000214029 ZNF891 - zinc finger protein 891 protein-coding 142-73 chr7 97366853 97366957 + 2 NA Intergenic L1PA7|LINE|L1 250312 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 491-195 chr4 160441968 160442355 + 2 NA Intergenic Intergenic -664377 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 386-6 chr1 63609526 63609826 + 2 NA intron (NM_001172819, intron 1 of 10) Tigger5b|DNA|TcMar-Tigger -13540 NM_001172818 5236 Hs.1869 NM_002633 ENSG00000079739 PGM1 CDG1T|GSD14 phosphoglucomutase 1 protein-coding 500-294 chr8 83689841 83690188 + 2 NA Intergenic Intergenic 286256 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 409-13 chr1 199895877 199896262 + 2 NA Intergenic Intergenic -131641 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 306-16 chr1 83644277 83644504 + 2 NA intron (NR_119375, intron 2 of 2) L2b|LINE|L2 198336 NR_146478 101927542 Hs.623976 NR_146478 LINC01712 - long intergenic non-protein coding RNA 1712 ncRNA 347-62 chr10 114563255 114563510 + 2 NA intron (NM_001352440, intron 4 of 20) intron (NM_001352440, intron 4 of 20) -36469 NM_001322889 3983 Hs.438236 NM_002313 ENSG00000099204 ABLIM1 ABLIM|LIMAB1|LIMATIN|abLIM-1 actin binding LIM protein 1 protein-coding 804-73 chr8 134289698 134290233 + 2 NA Intergenic Intergenic -308106 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 555-21 chr10 74862748 74863226 + 2 NA intron (NM_001370144, intron 3 of 15) Tigger19b|DNA|TcMar-Tigger 36387 NM_001370144 23522 Hs.35758 NM_012330 ENSG00000156650 KAT6B GTPTS|MORF|MOZ2|MYST4|ZC2HC6B|qkf|querkopf lysine acetyltransferase 6B protein-coding 340-463 chr5 131923404 131923617 + 2 NA intron (NM_001303622, intron 5 of 12) HAL1|LINE|L1 22153 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 257-276 chr3 124193463 124193636 + 2 NA intron (NM_001024660, intron 1 of 59) intron (NM_001024660, intron 1 of 59) 60620 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 231-263 chr4 123217320 123217487 + 2 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -179392 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 433-138 chr2 122941818 122942199 + 2 NA Intergenic L1MDa|LINE|L1 131473 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 256-128 chr14 83259975 83260157 + 2 NA Intergenic L1MC1|LINE|L1 617434 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 206-230 chr5 179395627 179395763 + 2 NA Intergenic L1MB7|LINE|L1 -50234 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 387-183 chr2 124599362 124599710 + 2 NA intron (NM_130773, intron 11 of 23) L1MC5|LINE|L1 574249 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 447-122 chr2 34530384 34530661 + 2 NA Intergenic Intergenic -147035 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 268-146 chr16 64381704 64381913 + 2 NA Intergenic MER52A|LTR|ERV1 740255 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 196-223 chr6 61567893 61568000 + 2 NA intron (NR_146870, intron 14 of 15) L1P4|LINE|L1 -6184 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 288-289 chr4 18414883 18415050 + 2 NA Intergenic AluSx1|SINE|Alu -393091 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 443-137 chr19 33945378 33945674 + 2 NA Intergenic AluSz6|SINE|Alu 148656 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 444-27 chr10 87570628 87570980 + 2 NA Intergenic L1MA4A|LINE|L1 62971 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 357-243 chr20 59649488 59649702 + 2 NA intron (NM_001281507, intron 1 of 12) intron (NM_001281507, intron 1 of 12) 20986 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 290-271 chr3 21661618 21661835 + 2 NA intron (NM_024697, intron 2 of 7) intron (NM_024697, intron 2 of 7) 89484 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 317-408 chr6 18337783 18338007 + 2 NA Intergenic MIR|SINE|MIR -49455 NM_182757 255488 Hs.148741 NM_182757 ENSG00000137393 RNF144B IBRDC2|PIR2|bA528A10.3|p53RFP ring finger protein 144B protein-coding 352-418 chr5 58286995 58287340 + 2 NA Intergenic L2|LINE|L2 -164826 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 477-65 chr11 115808555 115809013 + 2 NA Intergenic LTR8|LTR|ERV1 -48584 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 799-26 chr2 37165971 37166409 + 2 NA Intergenic AluJr|SINE|Alu -9143 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 356-124 chr13 29217053 29217341 + 2 NA intron (NM_001033602, intron 3 of 13) L1ME3C|LINE|L1 192740 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 343-316 chr21 34606455 34606667 + 2 NA intron (NM_004414, intron 1 of 3) intron (NM_004414, intron 1 of 3) 7282 NM_001285389 1827 Hs.282326 NM_004414 ENSG00000159200 RCAN1 ADAPT78|CSP1|DSC1|DSCR1|MCIP1|RCN1 regulator of calcineurin 1 protein-coding 584-13 chr1 209731085 209731590 + 2 NA intron (NM_181755, intron 5 of 6) L1MEb|LINE|L1 -7212 NR_134509 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 415-3 chr1 57646084 57646384 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -214347 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 397-292 chr7 4346349 4346573 + 2 NA Intergenic AluSc|SINE|Alu -211624 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 141-86 chr8 136501647 136501733 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -29108 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 265-401 chr8 121389028 121389257 + 2 NA Intergenic Intergenic -250204 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 762-78 chr8 131994377 131994941 + 2 NA intron (NM_001323558, intron 19 of 23) intron (NM_001323558, intron 19 of 23) 64723 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 281-341 chr5 3161574 3161815 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -16141 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 309-447 chr5 101597427 101597642 + 2 NA Intergenic L1MA9|LINE|L1 -694252 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 317-498 chr8 114176135 114176402 + 2 NA Intergenic MIR|SINE|MIR -739329 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 376-175 chr2 49636005 49636223 + 2 NA Intergenic L2|LINE|L2 338089 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 396-298 chr5 144950830 144951106 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 745577 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 472-219 chr3 186329865 186330270 + 2 NA intron (NM_001346, intron 1 of 24) intron (NM_001346, intron 1 of 24) 32167 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 623-13 chr10 64252013 64252390 + 2 NA Intergenic L1MEg|LINE|L1 -573327 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 374-374 chr8 19745918 19746212 + 2 NA intron (NM_001354488, intron 1 of 9) LOR1a|LTR|ERV1 11018 NM_001354490 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 561-86 chr19 14618275 14618640 + 2 NA TTS (NM_001289159) TTS (NM_001289159) -3756 NR_132784 106635534 NR_132784 SNORA104 - small nucleolar RNA, H/ACA box 104 snoRNA 329-555 chr8 9653652 9653848 + 2 NA intron (NM_003747, intron 3 of 26) MSTB2|LTR|ERVL-MaLR -87922 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 170-48 chr14 70287216 70287381 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -39497 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 233-133 chr17 69755741 69755953 + 2 NA intron (NR_109972, intron 3 of 4) Zaphod|DNA|hAT-Tip100 161860 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 237-69 chr12 16370249 16370431 + 2 NA intron (NM_001267598, intron 3 of 3) intron (NM_001267598, intron 3 of 3) 16923 NM_145764 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 410-120 chr2 3148935 3149167 + 2 NA Intergenic Intergenic -23025 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 185-88 chr2 13084220 13084368 + 2 NA Intergenic MER34C_|LTR|ERV1 -77281 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 441-241 chr7 19807029 19807436 + 2 NA Intergenic Intergenic -33615 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 138-88 chr8 77550659 77550779 + 2 NA Intergenic L1PA16|LINE|L1 100022 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 418-68 chr14 51298912 51299251 + 2 NA Intergenic Intergenic 29304 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 177-13 chr1 247257602 247257777 + 2 NA TTS (NR_160309) TTS (NR_160309) 1617 NR_160309 317705 Hs.553686 NM_173858 ENSG00000197617 VN1R5 V1RL5 vomeronasal 1 receptor 5 (gene/pseudogene) protein-coding 286-258 chr21 20216911 20217101 + 2 NA Intergenic Intergenic 41679 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 478-13 chr1 188069859 188070221 + 2 NA Intergenic L1MA4A|LINE|L1 626412 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 334-37 chr1 212556731 212557009 + 2 NA TTS (NR_125985) TTS (NR_125985) -8464 NM_001030287 467 Hs.460 NM_001674 ENSG00000162772 ATF3 - activating transcription factor 3 protein-coding 286-370 chr5 148341695 148341962 + 2 NA intron (NR_105057, intron 2 of 4) intron (NR_105057, intron 2 of 4) 6269 NM_001040433 643394 Hs.631798 NM_001040433 ENSG00000204909 SPINK9 LEKTI2 serine peptidase inhibitor, Kazal type 9 protein-coding 400-206 chr22 49000646 49000940 + 2 NA Intergenic L1MD1|LINE|L1 134023 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 191-153 chr4 84269886 84270043 + 2 NA intron (NR_125909, intron 4 of 8) intron (NR_125909, intron 4 of 8) 29205 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 334-192 chr16 27420663 27420862 + 2 NA intron (NM_181079, intron 2 of 9) L1MB7|LINE|L1 -6509 NM_021798 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 376-264 chr3 180779280 180779609 + 2 NA intron (NR_109986, intron 4 of 13) L1PA15|LINE|L1 90734 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 272-415 chr7 42340198 42340396 + 2 NA Intergenic Intergenic -103088 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 131-38 chr2 56912172 56912262 + 2 NA Intergenic MER33|DNA|hAT-Charlie -726447 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 309-144 chr14 44295506 44295714 + 2 NA Intergenic Intergenic 211673 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 680-39 chr14 82476488 82477164 + 2 NA Intergenic Intergenic -165806 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 337-414 chr4 153701270 153701592 + 2 NA intron (NM_003264, intron 2 of 2) MLT1A1|LTR|ERVL-MaLR 17151 NM_001318787 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 357-234 chr20 93630 93946 + 2 NA intron (NM_153325, intron 1 of 1) intron (NM_153325, intron 1 of 1) 6116 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 332-30 chr1 186711343 186711627 + 2 NA Intergenic L1ME2z|LINE|L1 30831 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 241-88 chr12 83992588 83992764 + 2 NA Intergenic Intergenic 920123 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 280-156 chr16 78163641 78163899 + 2 NA intron (NM_001291997, intron 3 of 7) intron (NM_001291997, intron 3 of 7) 64116 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 820-39 chr4 91275120 91275647 + 2 NA intron (NM_001145065, intron 10 of 10) L1MA4A|LINE|L1 1001919 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 223-212 chr3 70690091 70690250 + 2 NA Intergenic L1M5|LINE|L1 374754 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 290-362 chr5 119563158 119563362 + 2 NA Intergenic Intergenic -66298 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 220-66 chr11 18048947 18049101 + 2 NA Intergenic L1MA2|LINE|L1 -8236 NM_004179 7166 Hs.591999 NM_004179 ENSG00000129167 TPH1 TPRH|TRPH tryptophan hydroxylase 1 protein-coding 524-37 chr11 9063611 9063991 + 2 NA intron (NM_001367977, intron 7 of 22) HAL1|LINE|L1 26578 NR_049874 100847015 NR_049874 ENSG00000264984 MIR5691 - microRNA 5691 ncRNA 495-246 chr8 56041485 56041864 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 32227 NR_002437 26795 NR_002437 ENSG00000238650 SNORD54 RNU54|U54 small nucleolar RNA, C/D box 54 snoRNA 211-286 chr7 145400163 145400333 + 2 NA Intergenic MIRb|SINE|MIR -564195 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 328-438 chr5 23870755 23870999 + 2 NA Intergenic Intergenic -80471 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 226-120 chr16 77741122 77741316 + 2 NA intron (NM_001243657, intron 4 of 4) L1ME3G|LINE|L1 18705 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 295-417 chr6 132048338 132048554 + 2 NA Intergenic L1M4|LINE|L1 66817 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 393-363 chr8 114496984 114497320 + 2 NA Intergenic Intergenic -1060213 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 283-17 chr1 114870656 114870844 + 2 NA intron (NM_001282542, intron 8 of 30) L1MCa|LINE|L1 15887 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 295-59 chr10 124214797 124215025 + 2 NA Intergenic Intergenic -121313 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 461-105 chr17 44844594 44845041 + 2 NA Intergenic MIR|SINE|MIR -1512 NM_001271880 51751 Hs.151787 NM_016438 ENSG00000131097 HIGD1B CLST11240|CLST11240-15 HIG1 hypoxia inducible domain family member 1B protein-coding 541-216 chr7 45307645 45308058 + 2 NA Intergenic MST-int|LTR|ERVL-MaLR 150060 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 375-436 chr9 2440400 2440672 + 2 NA Intergenic L1PBa|LINE|L1 -181251 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 259-343 chr6 56343325 56343469 + 2 NA intron (NM_001318752, intron 1 of 28) intron (NM_001318752, intron 1 of 28) 50731 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 318-395 chr4 52272204 52272376 + 2 NA Intergenic MER75|DNA|PiggyBac 220986 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 655-18 chr10 91087241 91087704 + 2 NA Intergenic Intergenic 41664 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 348-366 chr4 76463964 76464238 + 2 NA intron (NM_020859, intron 1 of 10) MSTA-int|LTR|ERVL-MaLR 28872 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 575-78 chr19 37622209 37622527 + 2 NA Intergenic L1M2|LINE|L1 27492 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 276-365 chr5 34014251 34014521 + 2 NA intron (NR_037951, intron 6 of 8) L1MC5a|LINE|L1 -6336 NM_203382 23600 Hs.508343 NM_014324 ENSG00000242110 AMACR AMACRD|CBAS4|P504S|RACE|RM alpha-methylacyl-CoA racemase protein-coding 337-40 chr1 247766586 247766816 + 2 NA Intergenic L1MD1|LINE|L1 -8295 NM_012353 26188 Hs.381306 NM_012353 ENSG00000221888 OR1C1 HSTPCR27|OR1-42|OR1.5.10|ORL211|TPCR27 olfactory receptor family 1 subfamily C member 1 protein-coding 222-102 chr13 80390946 80391096 + 2 NA Intergenic L1M4|LINE|L1 -49895 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 279-308 chr5 10087945 10088136 + 2 NA Intergenic MLT1D-int|LTR|ERVL-MaLR 161848 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 789-46 chr8 76249582 76250215 + 2 NA Intergenic Intergenic -156756 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 325-186 chr15 100552181 100552391 + 2 NA non-coding (NR_073405, exon 1 of 1) non-coding (NR_073405, exon 1 of 1) -6380 NR_135693 102723335 Hs.587819 NR_135693 ENSG00000259540 LOC102723335 - uncharacterized LOC102723335 ncRNA 203-22 chr10 29168510 29168665 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR -120483 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 334-528 chr8 72497681 72497948 + 2 NA Intergenic Intergenic -39411 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 461-294 chr9 110896380 110896644 + 2 NA intron (NM_001351417, intron 5 of 5) intron (NM_001351417, intron 5 of 5) 140268 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 496-153 chr2 204093463 204093853 + 2 NA Intergenic L1MA9|LINE|L1 156910 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 635-121 chr9 30557278 30557706 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -149038 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 441-177 chr4 35135019 35135322 + 2 NA Intergenic Intergenic -865423 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 527-171 chr3 30947490 30947845 + 2 NA Intergenic MIR|SINE|MIR -53006 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 234-302 chr5 22920914 22921138 + 2 NA Intergenic Intergenic -67682 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 325-468 chr5 170203370 170203567 + 2 NA Intergenic Intergenic -4327 NR_108022 100507267 Hs.634846 NR_108022 LINC01187 CTB-27N1.1|KIDR long intergenic non-protein coding RNA 1187 ncRNA 355-22 chr1 194376252 194376546 + 2 NA Intergenic Intergenic 1071654 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 393-11 chr1 71177173 71177559 + 2 NA intron (NR_046217, intron 2 of 3) intron (NR_046217, intron 2 of 3) 96042 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 291-197 chr19 50635780 50635958 + 2 NA intron (NM_001160328, intron 3 of 10) MER77|LTR|ERVL 2176 NM_032298 84258 Hs.515554 NM_032298 ENSG00000213023 SYT3 SytIII synaptotagmin 3 protein-coding 288-128 chr15 26502793 26503062 + 2 NA Intergenic MIRb|SINE|MIR 126163 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 268-390 chr8 43007473 43007684 + 2 NA intron (NM_032410, intron 17 of 21) intron (NM_032410, intron 17 of 21) -48721 NR_033698 2339 Hs.370312 NM_002027 ENSG00000168522 FNTA FPTA|PGGT1A|PTAR2 farnesyltransferase, CAAX box, alpha protein-coding 252-258 chr3 47748659 47748868 + 2 NA intron (NM_003074, intron 2 of 27) intron (NM_003074, intron 2 of 27) 33130 NM_003074 6599 Hs.476179 NM_003074 ENSG00000173473 SMARCC1 BAF155|CRACC1|Rsc8|SRG3|SWI3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 protein-coding 226 chr1 15451676 15451865 + 2 NA Intergenic MIR|SINE|MIR -4962 NM_033440 63036 Hs.631866 NM_033440 ENSG00000142615 CELA2A ELA2A|PE-1 chymotrypsin like elastase 2A protein-coding 147-39 chr2 43643746 43643834 + 2 NA intron (NM_172069, intron 1 of 29) intron (NM_172069, intron 1 of 29) 6530 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 279-405 chr8 12882505 12882651 + 2 NA Intergenic L1PA17|LINE|L1 -63095 NM_020844 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 375-133 chr14 84369822 84370174 + 2 NA Intergenic Intergenic -901934 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 443-199 chr3 82024677 82024982 + 2 NA intron (NR_147146, intron 1 of 8) intron (NR_147146, intron 1 of 8) 38687 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 221-72 chr13 65693175 65693330 + 2 NA Intergenic Intergenic -172795 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 181-83 chr20 56289903 56289998 + 2 NA Intergenic Intergenic 41218 NM_019888 4159 Hs.248018 NM_019888 ENSG00000124089 MC3R BMIQ9|MC3|MC3-R|OB20|OQTL melanocortin 3 receptor protein-coding 352-382 chr4 102202010 102202218 + 2 NA Intergenic Intergenic 122198 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 320-364 chr3 154507425 154507650 + 2 NA Intergenic FLAM_C|SINE|Alu -77347 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 238-70 chr11 63293860 63294017 + 2 NA intron (NM_001039752, intron 2 of 9) L1PREC2|LINE|L1 4035 NR_134874 387775 Hs.188982 NM_001039752 ENSG00000184999 SLC22A10 OAT5|hOAT5 solute carrier family 22 member 10 protein-coding 304-50 chr10 50256513 50256681 + 2 NA Intergenic Intergenic -7987 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 207-301 chr8 119070047 119070200 + 2 NA intron (NM_006438, intron 1 of 5) intron (NM_006438, intron 1 of 5) -1341 NR_134297 101927513 Hs.676598 NR_134297 ENSG00000254278 LOC101927513 - uncharacterized LOC101927513 ncRNA 493-12 chr1 105247498 105247804 + 2 NA Intergenic L1M4|LINE|L1 371284 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 798-23 chr18 5028684 5029250 + 2 NA Intergenic Intergenic -52215 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 217-27 chr1 233693326 233693504 + 2 NA Intergenic Intergenic 69263 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 276-442 chr8 49314501 49314682 + 2 NA Intergenic L1PA15-16|LINE|L1 197589 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 674-37 chr17 9394014 9394502 + 2 NA intron (NM_004853, intron 6 of 7) intron (NM_004853, intron 6 of 7) 181562 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 229-161 chr18 61835659 61835824 + 2 NA intron (NM_173557, intron 1 of 1) L1MC5a|LINE|L1 57266 NM_173557 220441 Hs.165062 NM_173557 ENSG00000176641 RNF152 - ring finger protein 152 protein-coding 390-275 chr4 156487926 156488253 + 2 NA Intergenic Intergenic 483710 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 242-94 chr13 69457718 69457914 + 2 NA Intergenic Intergenic 235470 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 311-2 chr1 30984330 30984637 + 2 NA intron (NM_001020658, intron 7 of 21) intron (NM_001020658, intron 7 of 21) -16246 NR_003066 692200 NR_003066 SNORD103C HBII-251|SNORD85 small nucleolar RNA, C/D box 103C snoRNA 350-155 chr15 67006994 67007252 + 2 NA intron (NR_135686, intron 2 of 5) intron (NR_135686, intron 2 of 5) -50608 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 190-23 chr11 4778064 4778180 + 2 NA Intergenic L1ME3A|LINE|L1 -8184 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 271-350 chr5 66485638 66485881 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 25845 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 604-37 chr12 41446241 41446728 + 2 NA intron (NM_013377, intron 1 of 7) intron (NM_013377, intron 1 of 7) 8745 NM_013377 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 423-38 chr10 111931895 111932285 + 2 NA Intergenic L1MD1|LINE|L1 251675 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 483-24 chr10 31069670 31069964 + 2 NA Intergenic Intergenic -37880 NM_001143768 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 382-287 chr4 28033621 28033863 + 2 NA Intergenic L1MA2|LINE|L1 -785840 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 215-143 chr2 51222274 51222454 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 189763 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 305-134 chr12 129338973 129339241 + 2 NA intron (NM_133448, intron 3 of 8) AluSz6|SINE|Alu 130506 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 826-52 chr5 101861752 101862513 + 2 NA Intergenic L1PA13|LINE|L1 434152 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 355-110 chr11 112552740 112552988 + 2 NA intron (NR_104155, intron 2 of 3) AluSq2|SINE|Alu 2938 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 356-431 chr6 123893642 123893906 + 2 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 89909 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 417-64 chr12 100761633 100761943 + 2 NA Intergenic MER68|LTR|ERVL -32988 NM_001286615 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 249-146 chr16 83031122 83031363 + 2 NA intron (NM_001220490, intron 2 of 12) (TGTACA)n|Simple_repeat|Simple_repeat -40944 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 318-27 chr1 159417520 159417723 + 2 NA intron (NM_001363558, intron 3 of 3) THE1B|LTR|ERVL-MaLR -14571 NR_145510 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 361-82 chr11 91759692 91759905 + 2 NA Intergenic Intergenic -465236 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 253-377 chr7 25448606 25448821 + 2 NA Intergenic Intergenic 214427 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 137-59 chr21 27140187 27140287 + 2 NA Intergenic Intergenic -173149 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 341-227 chr2 6465577 6465848 + 2 NA Intergenic Intergenic -90290 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 535-44 chr11 110903972 110904503 + 2 NA Intergenic Intergenic -191048 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 459-168 chr21 31363365 31363717 + 2 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -19187 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 160-12 chr10 62557920 62558032 + 2 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 37528 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 777-74 chr8 141514248 141514747 + 2 NA Intergenic Intergenic -7267 NR_102364 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 309-529 chr8 38654327 38654534 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -53173 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 432-94 chr16 62325740 62326092 + 2 NA Intergenic Intergenic -289478 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 235-129 chr16 82053493 82053714 + 2 NA intron (NM_002153, intron 1 of 4) L2b|LINE|L2 18350 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 353-32 chr1 181999965 182000254 + 2 NA Intergenic MIRb|SINE|MIR 61603 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 176-158 chrX 7615629 7615745 + 2 NA Intergenic Intergenic -226575 NM_013452 26609 Hs.278906 NM_013452 ENSG00000182583 VCX VCX-10r|VCX-B1|VCX1|VCX10R|VCXB1 variable charge X-linked protein-coding 349-156 chr14 50138618 50138888 + 2 NA exon (NM_006939, exon 18 of 23) exon (NM_006939, exon 18 of 23) -22181 NM_024558 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 114-43 chr3 164655933 164656013 + 2 NA Intergenic LTR65|LTR|ERV1 175507 NR_126405 104355289 Hs.574909 NR_126405 ENSG00000241767 LINC01324 - long intergenic non-protein coding RNA 1324 ncRNA 248-266 chr4 19787125 19787337 + 2 NA Intergenic Intergenic -464674 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 307-321 chr3 174866564 174866811 + 2 NA intron (NM_207015, intron 1 of 13) (GAGAATA)n|Simple_repeat|Simple_repeat 7353 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 581-56 chr17 34815271 34815662 + 2 NA Intergenic Intergenic 145994 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 257-177 chr2 19738588 19738763 + 2 NA Intergenic Intergenic -130179 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 287-332 chr5 145956763 145956945 + 2 NA intron (NM_152550, intron 2 of 9) intron (NM_152550, intron 2 of 9) 20276 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 281-196 chr2 24568142 24568357 + 2 NA intron (NM_001362955, intron 3 of 23) intron (NM_001362955, intron 3 of 23) -16228 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 359-211 chr19 52144845 52145044 + 2 NA Intergenic Intergenic -5006 NR_135823 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 212-252 chr5 25400642 25400794 + 2 NA Intergenic Intergenic 209765 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 306-319 chr3 99488653 99488902 + 2 NA Intergenic L1MA8|LINE|L1 -149817 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 328-592 chr8 139014363 139014528 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -100404 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 425-120 chr18 75729762 75730125 + 2 NA Intergenic Intergenic -17540 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 454-231 chr4 62417792 62418145 + 2 NA Intergenic MLT2A2|LTR|ERVL -256203 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 251-51 chr11 37264099 37264248 + 2 NA Intergenic L2a|LINE|L2 -665894 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 491-21 chr10 67592064 67592388 + 2 NA intron (NM_001127384, intron 3 of 17) LTR27D|LTR|ERV1 73434 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 560-52 chr14 59914683 59915092 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -4826 NR_075071 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 402-41 chr11 12308496 12308760 + 2 NA intron (NM_032867, intron 3 of 8) L1ME1|LINE|L1 21728 NM_032867 84953 Hs.60371 NM_032867 ENSG00000133816 MICALCL Ebitein1 MICAL C-terminal like protein-coding 371-361 chr7 43521895 43522083 + 2 NA intron (NR_038276, intron 1 of 2) MLT1A1|LTR|ERVL-MaLR 553 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 212-230 chr4 32494946 32495122 + 2 NA Intergenic (CTTT)n|Simple_repeat|Simple_repeat 143996 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 397-2 chr1 43145417 43145765 + 2 NA Intergenic Intergenic -2313 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 395-327 chr8 17686197 17686454 + 2 NA intron (NM_001001931, intron 3 of 11) intron (NM_001001931, intron 3 of 11) -4668 NR_036103 100422850 NR_036103 ENSG00000265520 MIR548V - microRNA 548v ncRNA 426-273 chr7 53742556 53742835 + 2 NA intron (NR_038371, intron 4 of 5) L1MEg|LINE|L1 69236 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 224-11 chr1 73716403 73716600 + 2 NA intron (NR_146300, intron 3 of 3) L2|LINE|L2 41822 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 220-202 chr20 10144796 10144946 + 2 NA intron (NR_040710, intron 2 of 4) LTR67B|LTR|ERVL -73927 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 598-53 chr16 86467815 86468286 + 2 NA Intergenic Intergenic 40810 NR_033925 400550 Hs.448825 NR_033925 ENSG00000268388 FENDRR FOXF1-AS1|FOXF1AS1|TCONS_00024240|lincFOXF1|onco-lncRNA-21 FOXF1 adjacent non-coding developmental regulatory RNA ncRNA 480-227 chr5 27540421 27540882 + 2 NA Intergenic L1MC3|LINE|L1 68359 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 460-166 chr2 227011404 227011693 + 2 NA intron (NM_000092, intron 45 of 47) MER102b|DNA|hAT-Charlie 153011 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 291-414 chr7 61950409 61950594 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1353555 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 318-455 chr5 123658234 123658415 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 112907 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 321-222 chr16 78962078 78962303 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 638547 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 329-219 chr17 67536665 67536938 + 2 NA intron (NM_181671, intron 2 of 9) intron (NM_181671, intron 2 of 9) -65216 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 287-111 chr12 33910609 33910856 + 2 NA Intergenic L1M5|LINE|L1 -111764 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 209-290 chr7 6197069 6197194 + 2 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) -24994 NM_001367582 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 505-25 chr10 31394204 31394609 + 2 NA intron (NM_001323646, intron 4 of 11) L1ME3A|LINE|L1 5349 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 279-113 chr15 61605783 61606040 + 2 NA Intergenic Intergenic -124007 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 335-403 chr4 178428838 178429119 + 2 NA Intergenic L1MA6|LINE|L1 -521042 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 428-263 chr6 152599343 152599714 + 2 NA intron (NM_182961, intron 3 of 145) intron (NM_182961, intron 3 of 145) 37323 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 346-375 chr5 9231995 9232179 + 2 NA intron (NM_003966, intron 6 of 22) intron (NM_003966, intron 6 of 22) -178192 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 480-234 chr5 51230848 51231274 + 2 NA Intergenic L1MEc|LINE|L1 152271 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 311-16 chr1 91991451 91991666 + 2 NA intron (NM_001726, intron 13 of 18) intron (NM_001726, intron 13 of 18) -38427 NM_173567 253152 Hs.201555 NM_173567 ENSG00000172031 EPHX4 ABHD7|EH4|EPHXRP epoxide hydrolase 4 protein-coding 210-111 chr19 51611199 51611347 + 2 NA TTS (NM_003830) TTS (NM_003830) -16893 NR_034159 729975 Hs.716785 NR_034159 LINC01530 - long intergenic non-protein coding RNA 1530 ncRNA 310-193 chr18 4317786 4317985 + 2 NA intron (NM_001242761, intron 1 of 11) AluSg|SINE|Alu 53283 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 318-247 chr2 20877325 20877583 + 2 NA Intergenic Intergenic -54324 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 276-314 chr3 189893579 189893752 + 2 NA intron (NM_003722, intron 13 of 13) MIRb|SINE|MIR 63743 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 405-39 chr10 99472715 99472951 + 2 NA Intergenic L1MB2|LINE|L1 -42209 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 660-99 chr7 64284160 64284595 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -29496 NM_001294255 728927 Hs.386162 NM_001170905 ENSG00000234444 ZNF736 - zinc finger protein 736 protein-coding 248-381 chr7 63919382 63919594 + 2 NA Intergenic L1MC2|LINE|L1 -79318 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 522-133 chr2 80940634 80941140 + 2 NA Intergenic Intergenic 526059 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 331-418 chr5 55420714 55420926 + 2 NA intron (NM_015360, intron 25 of 26) L1MB7|LINE|L1 88106 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 545-166 chr4 114134331 114134731 + 2 NA Intergenic LTR68|LTR|ERV1 -154884 NM_001354211 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 305-351 chr3 89699746 89699978 + 2 NA Intergenic L1PBa|LINE|L1 592241 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 322-433 chr5 82562120 82562354 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -277918 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 360-307 chr3 94418033 94418311 + 2 NA Intergenic L1PA15|LINE|L1 355111 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 420-316 chrX 74480665 74481019 + 2 NA intron (NM_006517, intron 1 of 5) L1MB8|LINE|L1 59349 NM_006517 6567 Hs.75317 NM_006517 ENSG00000147100 SLC16A2 AHDS|DXS128|DXS128E|MCT 7|MCT 8|MCT7|MCT8|MRX22|XPCT solute carrier family 16 member 2 protein-coding 425-265 chr6 117739007 117739356 + 2 NA Intergenic Intergenic 63712 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 278-426 chr8 120697049 120697279 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -64089 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 189-52 chr14 48388735 48388894 + 2 NA Intergenic Intergenic -593800 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 340-12 chr1 76382639 76382951 + 2 NA intron (NM_001349111, intron 3 of 5) L1ME3|LINE|L1 308049 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 343-576 chr9 25840410 25840653 + 2 NA Intergenic Intergenic 60475 NR_121604 101929582 Hs.140547 NR_121604 ENSG00000236306 LINC01241 - long intergenic non-protein coding RNA 1241 ncRNA 238-366 chr7 123480939 123481100 + 2 NA intron (NR_104244, intron 7 of 13) intron (NR_104244, intron 7 of 13) 51929 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 173-65 chr2 40738987 40739074 + 2 NA Intergenic Intergenic -226595 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 233-190 chr2 165674163 165674302 + 2 NA intron (NM_024969, intron 3 of 4) intron (NM_024969, intron 3 of 4) 101896 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 144-73 chr4 133676568 133676665 + 2 NA Intergenic Intergenic 525173 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 392-150 chr2 105989009 105989230 + 2 NA Intergenic Intergenic -76569 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 233-244 chr3 165947928 165948063 + 2 NA Intergenic Intergenic -110572 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 231-136 chr18 49061120 49061278 + 2 NA intron (NM_001353210, intron 16 of 16) L2c|LINE|L2 -11431 NR_039898 100616420 NR_039898 ENSG00000263849 MIR4744 - microRNA 4744 ncRNA 394-213 chr3 59949280 59949636 + 2 NA intron (NM_001320901, intron 5 of 6) intron (NM_001320901, intron 5 of 6) 131451 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 351-246 chr2 173298767 173298987 + 2 NA Intergenic LTR25-int|LTR|ERV1 -16841 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 532-73 chr15 27734662 27735038 + 2 NA Intergenic L1M1|LINE|L1 364465 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 539-180 chr6 80618738 80619160 + 2 NA Intergenic Intergenic 512278 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 585-3 chr1 42101756 42102281 + 2 NA Intergenic L1ME3A|LINE|L1 -51392 NM_007102 2981 Hs.32966 NM_007102 ENSG00000044012 GUCA2B GCAP-II|UGN guanylate cyclase activator 2B protein-coding 394-344 chr9 106165802 106166108 + 2 NA Intergenic L1PB1|LINE|L1 -434973 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 300-141 chr16 53396688 53396859 + 2 NA Intergenic L1ME1|LINE|L1 23280 NR_119378 102723373 Hs.569678 NR_119378 ENSG00000261804 LOC102723373 - uncharacterized LOC102723373 ncRNA 524-243 chr7 110098236 110098554 + 2 NA Intergenic L1MA4|LINE|L1 -138182 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 393-66 chr12 15245270 15245564 + 2 NA Intergenic Intergenic -24000 NM_001190726 85004 Hs.199487 NM_032918 ENSG00000134533 RERG - RAS like estrogen regulated growth inhibitor protein-coding 213-291 chr8 134826209 134826360 + 2 NA Intergenic Intergenic -11785 NR_126028 552853 Hs.575612 NR_126028 ENSG00000253433 NCRNA00250 C8orf24 non-protein coding RNA 250 ncRNA 161-111 chr7 118564972 118565116 + 2 NA Intergenic L1MB7|LINE|L1 340340 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 317-501 chr8 125938441 125938633 + 2 NA intron (NR_038447, intron 2 of 3) intron (NR_038447, intron 2 of 3) 12660 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 341-409 chr4 173464767 173464974 + 2 NA intron (NM_001329597, intron 2 of 3) L1MB4|LINE|L1 54368 NM_001329597 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 433-79 chr14 65316869 65317220 + 2 NA Intergenic LTR33|LTR|ERVL 18139 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 436-45 chr11 40740146 40740525 + 2 NA intron (NM_020929, intron 1 of 4) L1MA9|LINE|L1 -447205 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 316-356 chr3 95799679 95799874 + 2 NA Intergenic L1PA15-16|LINE|L1 -116583 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 304-444 chr5 163737195 163737374 + 2 NA Intergenic Intergenic 231665 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 606-133 chr5 94168725 94169167 + 2 NA intron (NM_001145678, intron 20 of 20) intron (NM_001145678, intron 20 of 20) -57247 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 181-137 chr5 173580142 173580283 + 2 NA intron (NR_027108, intron 1 of 3) L1ME4a|LINE|L1 578 NR_027108 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 310-421 chr5 115029489 115029658 + 2 NA Intergenic Intergenic 140335 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 406-277 chr7 68749680 68749919 + 2 NA Intergenic Tigger20a|DNA|TcMar-Tigger 729546 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 261-337 chr6 88670920 88671070 + 2 NA intron (NM_001286428, intron 12 of 13) L1PB1|LINE|L1 -131626 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 344-517 chr9 30244242 30244499 + 2 NA Intergenic MIRc|SINE|MIR 164084 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 263-214 chr2 124697303 124697521 + 2 NA intron (NM_130773, intron 13 of 23) L1MC3|LINE|L1 672125 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 384-33 chr10 23751965 23752242 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 57376 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 232-269 chr4 69854945 69855095 + 2 NA intron (NM_005420, intron 3 of 7) intron (NM_005420, intron 3 of 7) 5125 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 311-528 chr8 129151953 129152178 + 2 NA Intergenic Intergenic 89175 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 336-215 chr17 62814384 62814587 + 2 NA intron (NR_135634, intron 1 of 1) (CA)n|Simple_repeat|Simple_repeat 5983 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 143-90 chr9 26843949 26844027 + 2 NA intron (NM_001167575, intron 5 of 5) intron (NM_001167575, intron 5 of 5) 48814 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 266-17 chr1 174608911 174609156 + 2 NA intron (NM_001366446, intron 13 of 25) (AACTACTT)n|Simple_repeat|Simple_repeat -91506 NM_001366451 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 818-27 chr2 132613029 132613586 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 56898 NM_001321235 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 249-240 chr20 40549978 40550111 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 139192 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 213-140 chr2 67966694 67966842 + 2 NA Intergenic MIRb|SINE|MIR 96236 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 240-298 chr3 148821105 148821335 + 2 NA Intergenic LTR49|LTR|ERV1 -6591 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 596-89 chr2 57094700 57095232 + 2 NA Intergenic AluSq2|SINE|Alu -812685 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 386-284 chr5 21052852 21053222 + 2 NA Intergenic L2c|LINE|L2 -406443 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 398-241 chr4 77372059 77372372 + 2 NA Intergenic Intergenic -139538 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 267-37 chr10 7341566 7341751 + 2 NA intron (NM_001029880, intron 4 of 20) intron (NM_001029880, intron 4 of 20) 67683 NM_001018039 57713 Hs.407983 NM_001018039 ENSG00000198879 SFMBT2 - Scm like with four mbt domains 2 protein-coding 200-280 chr8 129564082 129564227 + 2 NA intron (NR_130917, intron 1 of 3) L1MC5|LINE|L1 10864 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 400-68 chr12 41948527 41948911 + 2 NA Intergenic MIRb|SINE|MIR 184530 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 460-286 chr8 84763776 84764172 + 2 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 58047 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 382-35 chr10 55820787 55821084 + 2 NA Intergenic HERVL74-int|LTR|ERVL -192993 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 296-394 chr6 20331986 20332143 + 2 NA Intergenic Intergenic -69815 NM_001949 1871 Hs.269408 NM_001949 ENSG00000112242 E2F3 E2F-3 E2F transcription factor 3 protein-coding 263-239 chr21 29701413 29701620 + 2 NA intron (NM_000830, intron 1 of 16) L2a|LINE|L2 -46659 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 328-595 chr8 141489076 141489252 + 2 NA intron (NR_102363, intron 4 of 27) intron (NR_102363, intron 4 of 27) 18065 NR_160399 389690 Hs.689547 NM_207414 ENSG00000226807 MROH5 - maestro heat like repeat family member 5 (gene/pseudogene) protein-coding 441-108 chr19 34909935 34910362 + 2 NA Intergenic Intergenic 4833 NR_146451 100652911 Hs.292009 NR_146451 ENSG00000269037 LINC01838 - long intergenic non-protein coding RNA 1838 ncRNA 163-51 chr16 11111105 11111227 + 2 NA intron (NM_015226, intron 18 of 22) intron (NM_015226, intron 18 of 22) 145016 NM_003745 8651 Hs.50640 NM_003745 ENSG00000185338 SOCS1 CIS1|CISH1|JAB|SOCS-1|SSI-1|SSI1|TIP-3|TIP3 suppressor of cytokine signaling 1 protein-coding 748-21 chr11 69402177 69402835 + 2 NA Intergenic Intergenic -23149 NM_001319657 102724265 Hs.448669 NM_001319657 LOC102724265 - uncharacterized LOC102724265 protein-coding 295-248 chr2 228546763 228546979 + 2 NA intron (NR_151716, intron 1 of 3) MER67C|LTR|ERV1 64524 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 275-298 chr5 131722405 131722583 + 2 NA intron (NM_001346114, intron 2 of 16) intron (NM_001346114, intron 2 of 16) 74523 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 645-27 chr14 53845515 53846001 + 2 NA Intergenic MIRc|SINE|MIR 102726 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 323-279 chr2 163899530 163899795 + 2 NA Intergenic L1M2|LINE|L1 -163654 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 315-382 chr5 64291641 64291943 + 2 NA intron (NM_001113561, intron 5 of 7) L1PA10|LINE|L1 125949 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 384-324 chr6 140395551 140395898 + 2 NA Intergenic Intergenic 190472 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 199-246 chr8 122150967 122151122 + 2 NA Intergenic Intergenic 417600 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 335-219 chr19 19738655 19738842 + 2 NA Intergenic HSAT5|Satellite|Satellite -5636 NM_021030 7561 Hs.659932 NM_021030 ENSG00000105708 ZNF14 GIOT-4|KOX6 zinc finger protein 14 protein-coding 261-42 chr10 83763861 83764084 + 2 NA Intergenic Intergenic -86883 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 225-108 chr15 87943854 87944055 + 2 NA intron (NM_001320135, intron 12 of 15) intron (NM_001320135, intron 12 of 15) 2314 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 352-20 chr1 114973319 114973587 + 2 NA intron (NM_001282541, intron 27 of 31) HAL1b|LINE|L1 -56371 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 344-228 chr2 21103658 21103934 + 2 NA Intergenic Intergenic -20190 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 222-364 chr8 64718380 64718577 + 2 NA intron (NM_004820, intron 1 of 5) MER115|DNA|hAT-Tip100 80259 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 253-383 chr7 45927906 45928062 + 2 NA Intergenic L1ME1|LINE|L1 -6712 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 401-252 chr5 24095855 24096221 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 144690 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 353-251 chr2 120645504 120645801 + 2 NA Intergenic L1M4|LINE|L1 -90216 NM_001371271 285-102 chr13 70626679 70626910 + 2 NA Intergenic Intergenic -388347 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 270-203 chr2 232082131 232082305 + 2 NA intron (NR_046477, intron 5 of 18) intron (NR_046477, intron 5 of 18) -90435 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 324-318 chr20 49459119 49459346 + 2 NA intron (NM_004975, intron 1 of 1) L2b|LINE|L2 23436 NM_004975 3745 Hs.84244 NM_004975 ENSG00000158445 KCNB1 DRK1|Kv2.1 potassium voltage-gated channel subfamily B member 1 protein-coding 150-6 chr1 158222167 158222285 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -26110 NM_001320652 909 Hs.1309 NM_001763 ENSG00000158477 CD1A CD1|FCB6|HTA1|R4|T6 CD1a molecule protein-coding 572-4 chr1 97712678 97713073 + 2 NA intron (NM_000110, intron 5 of 22) intron (NM_000110, intron 5 of 22) -84046 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 470-111 chr19 31912520 31912907 + 2 NA Intergenic L1ME4a|LINE|L1 -113149 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 320-285 chr2 165716441 165716735 + 2 NA Intergenic Intergenic 77659 NM_004482 2591 Hs.170986 NM_004482 ENSG00000115339 GALNT3 GalNAc-T3|HFTC|HFTC1|HHS polypeptide N-acetylgalactosaminyltransferase 3 protein-coding 247-186 chr2 29988746 29988938 + 2 NA Intergenic Intergenic -67256 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 361-127 chr13 44574365 44574721 + 2 NA exon (NM_001243799, exon 1 of 2) exon (NM_001243799, exon 1 of 2) -1353 NR_038381 641467 Hs.624196 NR_038381 ENSG00000278156 TSC22D1-AS1 - TSC22D1 antisense RNA 1 ncRNA 121-22 chr19 12259448 12259534 + 2 NA Intergenic LTR53-int|LTR|ERVL 35121 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 391-102 chr14 59643552 59643782 + 2 NA intron (NM_021136, intron 3 of 8) L1MB7|LINE|L1 3353 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 273-332 chr4 105788665 105788876 + 2 NA intron (NM_001370181, intron 5 of 11) intron (NM_001370181, intron 5 of 11) 38402 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 259-23 chr1 187641709 187641950 + 2 NA Intergenic MER61-int|LTR|ERV1 198201 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 416-341 chr8 119615868 119616119 + 2 NA intron (NM_001330600, intron 8 of 25) intron (NM_001330600, intron 8 of 25) 22846 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 288-226 chr20 32022265 32022450 + 2 NA intron (NM_080625, intron 5 of 8) MIR3|SINE|MIR 11919 NM_080625 140706 Hs.382151 NM_080625 ENSG00000101331 CCM2L C20orf160|dJ310O13.5 CCM2 like scaffold protein protein-coding 344-375 chr5 21072665 21072965 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -386665 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 326-546 chr8 116532575 116532787 + 2 NA Intergenic Intergenic -119419 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 523-244 chr6 77041972 77042322 + 2 NA Intergenic Intergenic 421875 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 307-354 chr4 116543393 116543609 + 2 NA Intergenic Intergenic 243776 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 735-52 chr21 30859651 30860181 + 2 NA Intergenic HAL1ME|LINE|L1 21664 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 337-251 chr2 59024231 59024535 + 2 NA intron (NR_033873, intron 10 of 13) intron (NR_033873, intron 10 of 13) -193325 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 216-315 chr6 135865902 135866112 + 2 NA intron (NM_018945, intron 1 of 12) (ATTTT)n|Simple_repeat|Simple_repeat 14306 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 397-96 chr14 68700255 68700620 + 2 NA Intergenic AluSg|SINE|Alu -71650 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 269-121 chr14 79081958 79082131 + 2 NA intron (NR_073547, intron 14 of 20) (AT)n|Simple_repeat|Simple_repeat -117938 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 364-77 chr10 126284622 126284917 + 2 NA intron (NM_001288974, intron 2 of 18) L1ME3D|LINE|L1 103708 NM_003474 8038 Hs.594351 NM_003474 ENSG00000148848 ADAM12 ADAM12-OT1|CAR10|MCMP|MCMPMltna|MLTN|MLTNA ADAM metallopeptidase domain 12 protein-coding 1102-20 chrY 11330770 11331669 + 2 NA Intergenic AluYa5|SINE|Alu 1090371 NR_033667 352887 Hs.546221 NR_033667 ENSG00000206159 GYG2P1 GYG2P glycogenin 2 pseudogene 1 pseudo 333-154 chr14 79397657 79397927 + 2 NA intron (NM_001105250, intron 1 of 6) intron (NM_001105250, intron 1 of 6) 118412 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 169-142 chr8 131765488 131765616 + 2 NA Intergenic MIR|SINE|MIR -138541 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 231-226 chr3 65067552 65067751 + 2 NA Intergenic L1MC3|LINE|L1 -379651 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 399-110 chr16 58220810 58221145 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -22871 NM_001896 1459 Hs.82201 NM_001896 ENSG00000070770 CSNK2A2 CK2A2|CK2alpha'|CSNK2A1 casein kinase 2 alpha 2 protein-coding 234-377 chr8 4737996 4738221 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 256806 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 372-459 chr7 64402133 64402335 + 2 NA Intergenic HERVL-int|LTR|ERVL -31459 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 272-359 chr5 125609567 125609815 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 116430 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 327-128 chr12 114964030 114964292 + 2 NA Intergenic Intergenic -279986 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 208-188 chr4 89540685 89540853 + 2 NA Intergenic Intergenic -232969 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 288-132 chr15 47337519 47337797 + 2 NA intron (NM_001198999, intron 1 of 19) MER21-int|LTR|ERVL 153569 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 394-319 chr8 20441108 20441326 + 2 NA Intergenic MIR|SINE|MIR -137254 NM_021020 11178 Hs.521432 NM_021020 ENSG00000061337 LZTS1 F37|FEZ1 leucine zipper tumor suppressor 1 protein-coding 534-206 chr5 143610569 143610937 + 2 NA Intergenic L1PB1|LINE|L1 -69107 NR_049829 100846991 NR_049829 ENSG00000266478 MIR5197 - microRNA 5197 ncRNA 292-331 chr4 184141707 184141883 + 2 NA intron (NM_153343, intron 2 of 7) intron (NM_153343, intron 2 of 7) 76078 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 321-358 chr3 4125360 4125666 + 2 NA Intergenic L3b|LINE|CR1 -177791 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 360-320 chr4 30524627 30524980 + 2 NA Intergenic L1PB4|LINE|L1 -195566 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 209-327 chr8 101667310 101667426 + 2 NA 3' UTR (NM_001330593, exon 16 of 16) 3' UTR (NM_001330593, exon 16 of 16) 123601 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 442-7 chr1 57375458 57375734 + 2 NA intron (NM_001353980, intron 4 of 5) MIR|SINE|MIR 47516 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 400-376 chrX 82168145 82168352 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 966146 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 266-109 chr14 45468994 45469175 + 2 NA Intergenic Intergenic -215882 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 283-91 chr11 130647801 130648036 + 2 NA Intergenic Intergenic -18817 NR_107019 102466873 NR_107019 ENSG00000274999 MIR8052 hsa-mir-8052 microRNA 8052 ncRNA 414-288 chr6 124682291 124682581 + 2 NA intron (NM_001040214, intron 4 of 6) LTR107_Mam|LTR|LTR -280109 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 333-248 chr2 81490950 81491148 + 2 NA Intergenic MIRb|SINE|MIR -24103 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 532-196 chr5 2187793 2188264 + 2 NA Intergenic Intergenic 124173 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 437-156 chr20 22428494 22428869 + 2 NA Intergenic Intergenic -8038 NR_027089 284788 Hs.651993 NR_027089 ENSG00000204684 LOC284788 - uncharacterized LOC284788 ncRNA 353-370 chr4 47659565 47659795 + 2 NA intron (NM_006587, intron 12 of 21) MSTB|LTR|ERVL-MaLR 7011 NR_107020 102467004 NR_107020 ENSG00000277388 MIR8053 hsa-mir-8053 microRNA 8053 ncRNA 785-5 chr1 82241779 82242260 + 2 NA Intergenic LTR8B|LTR|ERV1 439566 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 390-182 chr2 63369241 63369456 + 2 NA intron (NM_001354045, intron 12 of 12) intron (NM_001354045, intron 12 of 12) 68659 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 627-94 chr5 94658483 94658864 + 2 NA intron (NM_032290, intron 9 of 20) L1M2b|LINE|L1 40004 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 219-182 chr2 135476433 135476613 + 2 NA intron (NM_001286569, intron 2 of 21) L1MC5a|LINE|L1 54062 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 353-363 chr4 36800593 36800891 + 2 NA Intergenic L1MA3|LINE|L1 -158842 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 231-221 chr3 33924619 33924843 + 2 NA Intergenic Intergenic 126101 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 180-131 chr5 28080913 28081049 + 2 NA Intergenic L1MB8|LINE|L1 206684 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 336-250 chr19 52324405 52324636 + 2 NA 3' UTR (NM_001297624, exon 4 of 4) 3' UTR (NM_001297624, exon 4 of 4) -11723 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 240-115 chr13 20574609 20574809 + 2 NA intron (NR_148465, intron 2 of 20) intron (NR_148465, intron 2 of 20) 7552 NM_001353572 8100 Hs.187376 NM_006531 ENSG00000032742 IFT88 D13S1056E|DAF19|TG737|TTC10|hTg737 intraflagellar transport 88 protein-coding 274-392 chr8 110436060 110436222 + 2 NA Intergenic ERVL-int|LTR|ERVL -460370 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 319-148 chr14 75572042 75572233 + 2 NA Intergenic Intergenic -6483 NM_017791 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 468-305 chr7 104289202 104289481 + 2 NA Intergenic Intergenic -39315 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 313-358 chr3 113684141 113684399 + 2 NA intron (NM_001009899, intron 1 of 6) L1M1|LINE|L1 12372 NM_001009899 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 341-488 chr7 18940915 18941142 + 2 NA intron (NM_058176, intron 22 of 22) intron (NM_058176, intron 22 of 22) 176608 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 349-192 chr16 14028258 14028562 + 2 NA Intergenic Intergenic -7333 NR_110915 101927348 Hs.569621 NR_110915 ENSG00000261856 LINC02186 - long intergenic non-protein coding RNA 2186 ncRNA 227 chr1 14428876 14429089 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -9009 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 151-18 chr11 101054434 101054578 + 2 NA intron (NM_001271161, intron 3 of 6) intron (NM_001271161, intron 3 of 6) 74557 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 287-191 chr2 37480454 37480694 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 135944 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 364-94 chr11 81773115 81773458 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 117550 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 475-115 chr18 51208042 51208389 + 2 NA Intergenic Intergenic -10534 NM_016626 51320 Hs.465144 NM_016626 ENSG00000176624 MEX3C BM-013|MEX-3C|RKHD2|RNF194 mex-3 RNA binding family member C protein-coding 286-426 chr7 64883886 64884114 + 2 NA Intergenic Intergenic -19242 NM_021148 10793 Hs.520889 NM_021148 ENSG00000198039 ZNF273 HZF9 zinc finger protein 273 protein-coding 302-297 chr3 124059074 124059259 + 2 NA Intergenic MER119|DNA|hAT-Charlie -35515 NM_001322988 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 218-138 chr19 33887816 33887985 + 2 NA Intergenic Intergenic 91030 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 282-384 chr5 106041534 106041695 + 2 NA Intergenic L1MEf|LINE|L1 942140 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 225-364 chr8 114549215 114549396 + 2 NA Intergenic Intergenic -1112366 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 578-149 chr6 14238706 14239130 + 2 NA Intergenic Intergenic 46536 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 192-172 chr6 7851424 7851582 + 2 NA intron (NM_001718, intron 2 of 6) L1MEg|LINE|L1 58574 NM_001145549 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 456-175 chr2 225908718 225909139 + 2 NA Intergenic Intergenic -233866 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 281-389 chr6 62907825 62908063 + 2 NA Intergenic L1MA2|LINE|L1 412033 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 517-53 chr12 2317868 2318322 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 48319 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 853-6 chr12 4344461 4345093 + 2 NA intron (NM_020375, intron 3 of 5) L1PA5|LINE|L1 23564 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 298-162 chr17 34559092 34559273 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 20187 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 674-89 chr6 68510336 68510821 + 2 NA Intergenic Intergenic 123746 NR_125872 101928307 Hs.535825 NR_125872 ENSG00000230910 LOC101928307 - uncharacterized LOC101928307 ncRNA 547-57 chr13 32861512 32861895 + 2 NA intron (NR_047020, intron 4 of 4) L2b|LINE|L2 49949 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 361-447 chr8 83922763 83922988 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -259912 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 147-8 chr10 89533191 89533336 + 2 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 2331 NM_213606 387700 Hs.530338 NM_213606 ENSG00000152779 SLC16A12 CJMG|CRT2|CTRCT47|MCT12 solute carrier family 16 member 12 protein-coding 331-520 chr8 53182136 53182315 + 2 NA Intergenic L1ME1|LINE|L1 69412 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 331-228 chr18 77916710 77916967 + 2 NA Intergenic HAL1b|LINE|L1 76889 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 452-34 chr10 99629992 99630328 + 2 NA Intergenic AluSz|SINE|Alu -9721 NM_031212 81894 Hs.403790 NM_031212 ENSG00000155287 SLC25A28 MFRN2|MRS3/4|MRS4L|NPD016 solute carrier family 25 member 28 protein-coding 304-550 chr9 98383243 98383426 + 2 NA intron (NM_005458, intron 11 of 18) L2a|LINE|L2 -127685 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 748-68 chr4 177496805 177497225 + 2 NA Intergenic Intergenic -54512 NR_033655 175 Hs.207776 NM_000027 ENSG00000038002 AGA AGU|ASRG|GA aspartylglucosaminidase protein-coding 280-63 chr10 126475785 126475987 + 2 NA intron (NR_146939, intron 5 of 11) Tigger8|DNA|TcMar-Tigger 45607 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 157-13 chr1 214713992 214714098 + 2 NA Intergenic L1MD1|LINE|L1 110850 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 294-443 chr7 99119519 99119729 + 2 NA intron (NM_020429, intron 1 of 18) intron (NM_020429, intron 1 of 18) 24484 NM_181349 57154 Hs.189329 NM_020429 ENSG00000198742 SMURF1 - SMAD specific E3 ubiquitin protein ligase 1 protein-coding 341-439 chr5 105100907 105101159 + 2 NA TTS (NR_000039) TTS (NR_000039) 1559 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 297-361 chr5 26380634 26380843 + 2 NA Intergenic Intergenic 657848 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 284-372 chr7 25434018 25434282 + 2 NA Intergenic Intergenic -205664 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 334-492 chr7 42451545 42451729 + 2 NA Intergenic MIRb|SINE|MIR -214428 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 699-56 chr2 180593709 180594277 + 2 NA Intergenic Intergenic -98111 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 346-439 chr6 121662518 121662809 + 2 NA Intergenic Intergenic 227017 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 481-29 chr10 55367755 55368048 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -231141 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 264-25 chr1 229786993 229787209 + 2 NA Intergenic Intergenic 98717 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 255-296 chr4 69528862 69529093 + 2 NA Intergenic HERVL-int|LTR|ERVL -2963 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 257-282 chr3 173516395 173516601 + 2 NA intron (NM_014932, intron 2 of 6) L2|LINE|L2 -67936 NM_001365934 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 387-72 chr12 1716417 1716750 + 2 NA intron (NM_024551, intron 1 of 7).2 intron (NM_024551, intron 1 of 7).2 25513 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 373-154 chr17 11449114 11449441 + 2 NA intron (NM_001173462, intron 3 of 4) AluSx3|SINE|Alu -149193 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 246-136 chr15 93828183 93828336 + 2 NA Intergenic Intergenic -28301 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 352-28 chr1 218637786 218638018 + 2 NA intron (NR_031644, intron 3 of 6) intron (NR_031644, intron 3 of 6) 127807 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 271-211 chr2 129781992 129782223 + 2 NA Intergenic Intergenic 95384 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 216-173 chr2 103576866 103577057 + 2 NA Intergenic L1MB7|LINE|L1 -592532 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 360-191 chr19 36239014 36239349 + 2 NA TTS (NM_007145) TTS (NM_007145) 6747 NM_001366188 147929 Hs.596338 NM_152477 ENSG00000196357 ZNF565 - zinc finger protein 565 protein-coding 540-11 chr1 78181787 78182220 + 2 NA Intergenic Intergenic -47596 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 308-435 chr6 141435292 141435574 + 2 NA Intergenic Intergenic 653366 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 462-264 chr7 52234852 52235177 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -800619 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 276-224 chr2 61674888 61675082 + 2 NA Intergenic Intergenic -136629 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 580-87 chr2 126408200 126408569 + 2 NA Intergenic Intergenic -247551 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 492-276 chr9 16827074 16827417 + 2 NA intron (NM_017637, intron 1 of 6) intron (NM_017637, intron 1 of 6) 43425 NM_001317939 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 358-503 chr8 136870653 136870838 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 339947 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 226-348 chr8 90776658 90776863 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -15015 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 394-15 chr1 105042327 105042667 + 2 NA Intergenic L1M3f|LINE|L1 576438 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 376-123 chr15 73182805 73183147 + 2 NA intron (NM_002499, intron 7 of 28) L1MCc|LINE|L1 -116934 NR_162148 113219462 NR_162148 MIR12135 - microRNA 12135 ncRNA 487-110 chr17 51808759 51809088 + 2 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 349791 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 508-45 chr11 120293959 120294362 + 2 NA intron (NM_001244682, intron 3 of 12) intron (NM_001244682, intron 3 of 12) -28228 NR_038829 649133 Hs.568902 NR_038829 ENSG00000259541 LOC649133 - uncharacterized LOC649133 ncRNA 469-196 chr4 41591408 41591806 + 2 NA intron (NM_001330786, intron 1 of 22) intron (NM_001330786, intron 1 of 22) -21102 NM_001330674 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 596-37 chr11 79317300 79317708 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 84605 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 1066-13 chr20 42125704 42126378 + 2 NA intron (NM_133170, intron 20 of 31) MIRb|SINE|MIR -507664 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 292-460 chr9 29895275 29895477 + 2 NA Intergenic Intergenic 513078 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 334-366 chr3 166883335 166883638 + 2 NA Intergenic L1PB3|LINE|L1 -15197 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 277-429 chr8 124053476 124053675 + 2 NA intron (NM_001039112, intron 22 of 40) intron (NM_001039112, intron 22 of 40) -12793 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 190-16 chr10 63053544 63053718 + 2 NA Intergenic Intergenic -79616 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 326-322 chr3 13611208 13611486 + 2 NA intron (NM_001004019, intron 4 of 17) L1MB3|LINE|L1 -7034 NR_132775 106635526 NR_132775 SNORA93 - small nucleolar RNA, H/ACA box 93 snoRNA 380-42 chr10 61429681 61429976 + 2 NA intron (NR_134508, intron 3 of 6) intron (NR_134508, intron 3 of 6) -22811 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 621-28 chr13 69942102 69942668 + 2 NA intron (NM_001286725, intron 2 of 9) intron (NM_001286725, intron 2 of 9) -164828 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 430-160 chr2 146486946 146487282 + 2 NA Intergenic Intergenic -99943 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 360-161 chr16 77406613 77406817 + 2 NA intron (NM_199355, intron 3 of 22) L1PA16|LINE|L1 28319 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 342-300 chr22 39261082 39261418 + 2 NA Intergenic Intergenic -16268 NM_002608 5155 Hs.1976 NM_002608 ENSG00000100311 PDGFB IBGC5|PDGF-2|PDGF2|SIS|SSV|c-sis platelet derived growth factor subunit B protein-coding 259-354 chr6 126828032 126828191 + 2 NA Intergenic Intergenic -290560 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 352-396 chr5 7123714 7124006 + 2 NA Intergenic L1PA16|LINE|L1 145494 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 240-152 chr15 57472483 57472681 + 2 NA intron (NM_032866, intron 8 of 18) intron (NM_032866, intron 8 of 18) 96077 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 370-410 chr7 11116856 11117168 + 2 NA intron (NR_033436, intron 16 of 16) intron (NR_033436, intron 16 of 16) 143140 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 268-346 chr6 78102805 78103036 + 2 NA Intergenic Intergenic 436389 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 522-183 chr3 180523864 180524278 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -78092 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 359-194 chr18 2365742 2365926 + 2 NA Intergenic Intergenic 205671 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 360-42 chr10 66408210 66408516 + 2 NA intron (NM_001127384, intron 11 of 17) intron (NM_001127384, intron 11 of 17) -517673 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 296-477 chr8 112900322 112900555 + 2 NA intron (NM_001363185, intron 8 of 66) LTR40b|LTR|ERVL 256945 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 356-95 chr11 128007797 128008084 + 2 NA Intergenic L1PA11|LINE|L1 -200826 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 379-388 chrX 5302261 5302615 + 2 NA Intergenic Intergenic -668866 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 321-163 chr14 36781754 36781985 + 2 NA intron (NM_001171170, intron 3 of 10) L1M3c|LINE|L1 124301 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 238-400 chr8 134306101 134306311 + 2 NA Intergenic Intergenic -291865 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 237-180 chr2 79413566 79413769 + 2 NA Intergenic L1MA8|LINE|L1 87177 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 170-143 chr8 130660202 130660311 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -216582 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 302-446 chr8 75199409 75199651 + 2 NA Intergenic L1MA4A|LINE|L1 78951 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 216-244 chr4 32333651 32333828 + 2 NA Intergenic Intergenic -17299 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 507-38 chr10 105205999 105206395 + 2 NA intron (NM_014978, intron 16 of 26) intron (NM_014978, intron 16 of 26) -539981 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 634-155 chr8 126913897 126914497 + 2 NA Intergenic Intergenic -98957 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 358-188 chr2 3985484 3985769 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 11465 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 198-41 chr11 88756522 88756677 + 2 NA intron (NM_001143831, intron 2 of 8) A-rich|Low_complexity|Low_complexity 252023 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 665-50 chr2 56733128 56733555 + 2 NA Intergenic Intergenic -547571 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 373-206 chr2 129773811 129774150 + 2 NA Intergenic L1MA7|LINE|L1 103511 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 329-125 chr12 68589165 68589350 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -21642 NM_015646 5908 Hs.369920 NM_015646 ENSG00000127314 RAP1B K-REV|RAL1B RAP1B, member of RAS oncogene family protein-coding 317-457 chr7 83108105 83108359 + 2 NA intron (NM_033026, intron 3 of 24) intron (NM_033026, intron 3 of 24) 54652 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 282-454 chr8 90703003 90703212 + 2 NA Intergenic Intergenic -57024 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 412-241 chr4 113941755 113942131 + 2 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 37704 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 652-78 chr22 49061784 49062393 + 2 NA Intergenic Intergenic 195318 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 190-42 chr12 86175066 86175246 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) 81235 NR_147093 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 274-98 chr12 77965703 77965932 + 2 NA intron (NM_001024383, intron 3 of 39) intron (NM_001024383, intron 3 of 39) 134923 NM_014903 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 224-342 chr8 132097328 132097545 + 2 NA intron (NM_001145095, intron 4 of 15) MIRb|SINE|MIR 7829 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 668-72 chr4 36558543 36558979 + 2 NA intron (NR_149124, intron 3 of 4) L1P4|LINE|L1 83139 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 254-185 chr2 77506177 77506406 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 16085 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 277-238 chr21 29605671 29605899 + 2 NA intron (NM_000830, intron 7 of 16) intron (NM_000830, intron 7 of 16) 9745 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 655-116 chr8 8380031 8380431 + 2 NA intron (NR_163138, intron 2 of 6) AluJb|SINE|Alu 6013 NM_001369759 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 548-78 chr14 69974556 69974922 + 2 NA intron (NM_001034852, intron 3 of 11) intron (NM_001034852, intron 3 of 11) -3394 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 204-166 chr20 40375843 40376016 + 2 NA Intergenic L1ME3Cz|LINE|L1 313307 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 459-94 chr15 86504365 86504698 + 2 NA intron (NM_152336, intron 18 of 24) L1MB7|LINE|L1 -187563 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 361-348 chr5 15955363 15955604 + 2 NA Intergenic MIRc|SINE|MIR 20301 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 467-223 chr5 42537076 42537358 + 2 NA intron (NM_001242400, intron 2 of 10) L1PB1|LINE|L1 -10826 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 194-32 chr11 92963951 92964141 + 2 NA Intergenic MER21C|LTR|ERVL -5577 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 296-248 chr2 177088373 177088544 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 123953 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 296-268 chr20 46897708 46897941 + 2 NA intron (NM_172110, intron 1 of 13) intron (NM_172110, intron 1 of 13) 2981 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 412-20 chr10 18460057 18460417 + 2 NA intron (NM_201593, intron 3 of 13) intron (NM_201593, intron 3 of 13) 59662 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 235-52 chr10 100205377 100205568 + 2 NA intron (NM_001278, intron 11 of 20) L2c|LINE|L2 -19443 NM_006459 10613 Hs.150087 NM_006459 ENSG00000107566 ERLIN1 C10orf69|Erlin-1|KE04|KEO4|SPFH1|SPG62 ER lipid raft associated 1 protein-coding 264-308 chr5 10699326 10699583 + 2 NA intron (NM_004394, intron 2 of 3) intron (NM_004394, intron 2 of 3) 61780 NM_001291963 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 740-56 chr3 95468707 95469207 + 2 NA Intergenic MER65A|LTR|ERV1 214236 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 251-6 chr1 77006915 77007116 + 2 NA intron (NM_001320274, intron 2 of 2) MLT1H2|LTR|ERVL-MaLR -53128 NR_106978 102466995 NR_106978 ENSG00000276081 MIR7156 hsa-mir-7156 microRNA 7156 ncRNA 223-217 chr3 89339906 89340056 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 232360 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 295-415 chr6 108817078 108817255 + 2 NA Intergenic L1PA7|LINE|L1 -31250 NM_001286609 84071 Hs.645481 NM_032131 ENSG00000118690 ARMC2 SPGF38|bA787I22.1 armadillo repeat containing 2 protein-coding 367-486 chrX 16937150 16937480 + 2 NA Intergenic Intergenic -9343 NM_004726 9185 Hs.186810 NM_004726 ENSG00000169891 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 421-98 chr16 52687641 52687995 + 2 NA Intergenic Intergenic -80843 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 268 chr1 4891995 4892211 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner 237494 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 924-28 chr21 19711188 19712082 + 2 NA Intergenic L2a|LINE|L2 188120 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 216-191 chr20 6521180 6521294 + 2 NA intron (NR_109953, intron 3 of 3) L1MA9|LINE|L1 94505 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 271-451 chr8 106775308 106775574 + 2 NA Intergenic L1MA10|LINE|L1 -5197 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 236-195 chr2 215265818 215265952 + 2 NA Intergenic L1M5|LINE|L1 -46174 NM_004044 471 Hs.90280 NM_004044 ENSG00000138363 ATIC AICAR|AICARFT|HEL-S-70p|IMPCHASE|PURH 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 332-108 chr11 133324818 133324998 + 2 NA intron (NM_001012393, intron 1 of 7) (AT)n|Simple_repeat|Simple_repeat 207593 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 299-389 chr6 3201442 3201609 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -5758 NR_038296 100507194 Hs.678053 NR_038295 ENSG00000230269 LINC02525 - long intergenic non-protein coding RNA 2525 ncRNA 177-134 chr5 144954145 144954291 + 2 NA Intergenic MIR|SINE|MIR 748827 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 342-97 chr11 91156560 91156774 + 2 NA Intergenic Intergenic -287465 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 319-274 chr2 174849287 174849500 + 2 NA intron (NR_038133, intron 5 of 11) intron (NR_038133, intron 5 of 11) -1775 NM_001206602 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 328-633 chrX 88052433 88052759 + 2 NA Intergenic L1MB4|LINE|L1 534794 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 409-292 chr8 66726291 66726551 + 2 NA intron (NM_001033578, intron 1 of 16) intron (NM_001033578, intron 1 of 16) 13640 NM_001033578 23678 Hs.613417 NM_013257 ENSG00000104205 SGK3 CISK|SGK2|SGKL serum/glucocorticoid regulated kinase family member 3 protein-coding 316-458 chr5 127719251 127719512 + 2 NA intron (NM_001317938, intron 2 of 6) L1MA3|LINE|L1 15992 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 261-112 chr14 78536264 78536436 + 2 NA intron (NM_004796, intron 1 of 16) LTR16C|LTR|ERVL 132631 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 384-29 chr10 10841059 10841384 + 2 NA intron (NM_001326327, intron 1 of 14) L1PA8|LINE|L1 42496 NM_001326326 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 274-63 chr11 21698196 21698408 + 2 NA Intergenic L1MDa|LINE|L1 -494783 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 811-34 chr4 32151792 32152345 + 2 NA intron (NR_125936, intron 2 of 2) AluSz|SINE|Alu -129646 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 375-73 chr11 48253473 48253674 + 2 NA Intergenic L1PA16|LINE|L1 8469 NM_001004727 119764 Hs.553565 NM_001004727 ENSG00000172208 OR4X2 OR11-105 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) protein-coding 337-531 chr8 52246195 52246397 + 2 NA intron (NM_001352881, intron 2 of 2) intron (NM_001352881, intron 2 of 2) 2348 NR_148196 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 336-525 chr7 97202446 97202732 + 2 NA Intergenic Intergenic 85996 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 320-203 chr17 27394838 27395091 + 2 NA Intergenic L1MA3|LINE|L1 -23041 NR_033892 440419 Hs.385755 NR_033892 ENSG00000266433 TBC1D3P5 - TBC1 domain family member 3 pseudogene 5 pseudo 647-26 chr14 47393713 47394099 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -50660 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 482-161 chr3 43750267 43750582 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -58830 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 392-265 chr5 158664535 158664874 + 2 NA Intergenic Intergenic -254931 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 689-23 chr13 27852158 27852599 + 2 NA intron (NR_047484, intron 1 of 4) MIRb|SINE|MIR 59895 NM_145657 219409 Hs.351785 NM_145657 ENSG00000169840 GSX1 GSH1|Gsh-1 GS homeobox 1 protein-coding 149-70 chr3 113047662 113047767 + 2 NA Intergenic Intergenic -28043 NM_001319112 25871 Hs.591288 NM_015412 ENSG00000163608 NEPRO C3orf17|NET17 nucleolus and neural progenitor protein protein-coding 362-277 chr3 106845791 106846118 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 394684 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 243-122 chr14 48405310 48405476 + 2 NA Intergenic L1MA4|LINE|L1 -610379 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 220-325 chr6 126388022 126388173 + 2 NA intron (NR_104462, intron 2 of 3) intron (NR_104462, intron 2 of 3) 47982 NR_104462 387103 Hs.486401 NM_001012507 ENSG00000203760 CENPW C6orf173|CENP-W|CUG2 centromere protein W protein-coding 224-335 chr8 122620490 122620647 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -51924 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 414-236 chr4 67878305 67878632 + 2 NA intron (NM_004262, intron 1 of 9) L2a|LINE|L2 5534 NM_004262 9407 Hs.132195 NM_004262 ENSG00000153802 TMPRSS11D HAT transmembrane serine protease 11D protein-coding 304-10 chr1 80075444 80075670 + 2 NA Intergenic Intergenic -460198 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 319-212 chr19 11750873 11751095 + 2 NA Intergenic L1MA2|LINE|L1 -12038 NM_017507 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 211-332 chrX 13119888 13120074 + 2 NA Intergenic Intergenic -75361 NM_174901 171484 Hs.667546 NM_174901 ENSG00000187268 FAM9C TEX39C family with sequence similarity 9 member C protein-coding 485-28 chr10 38821806 38822197 + 2 NA Intergenic Intergenic 125405 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 389-244 chr3 128860984 128861274 + 2 NA TTS (NR_034179) TTS (NR_034179) 10412 NR_034179 653712 Hs.653243 NR_034179 ENSG00000231305 LOC653712 - intraflagellar transport 122 homolog (Chlamydomonas) pseudogene pseudo 376-155 chr18 61455706 61455934 + 2 NA intron (NM_031891, intron 1 of 11) intron (NM_031891, intron 1 of 11) 122390 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 426-238 chr5 85562099 85562337 + 2 NA Intergenic L1PA8A|LINE|L1 -720226 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 577-193 chr8 87488200 87488601 + 2 NA Intergenic Intergenic 385615 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 315-328 chr3 192767525 192767723 + 2 NA Intergenic LTR106_Mam|LTR|LTR -40083 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 390-185 chr2 72760697 72761056 + 2 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 65157 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 324-101 chr11 91457374 91457623 + 2 NA Intergenic Intergenic -588296 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 186-152 chr7 47237811 47237938 + 2 NA Intergenic L1MEf|LINE|L1 226929 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 274-338 chr6 126590498 126590700 + 2 NA Intergenic Intergenic 105968 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 287-267 chr3 163272884 163273112 + 2 NA intron (NR_033945, intron 2 of 6) intron (NR_033945, intron 2 of 6) 30303 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 259-83 chr12 13627852 13628056 + 2 NA intron (NM_000834, intron 4 of 12) MIR|SINE|MIR -251209 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 458-125 chr2 44244837 44245202 + 2 NA Intergenic Intergenic -30461 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 251-65 chr12 43311276 43311449 + 2 NA Intergenic MER39B|LTR|ERV1 156047 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 569-95 chr2 67860953 67861399 + 2 NA Intergenic Intergenic -35614 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 267-269 chr3 159490575 159490763 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 208023 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 503-258 chr7 31695118 31695449 + 2 NA intron (NM_001145123, intron 2 of 3) intron (NM_001145123, intron 2 of 3) 8068 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 176-100 chr4 175394521 175394661 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 393085 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 310-223 chr2 14861814 14861988 + 2 NA Intergenic Intergenic 229184 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 313-193 chr16 83579798 83580022 + 2 NA intron (NM_001220489, intron 6 of 12) L2c|LINE|L2 71564 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 232 chr1 2168802 2169026 + 2 NA intron (NR_146911, intron 7 of 15) intron (NR_146911, intron 7 of 15) 14961 NR_146290 100506504 Hs.742283 NR_146290 ENSG00000182873 PRKCZ-AS1 - PRKCZ antisense RNA 1 ncRNA 559-21 chr10 130011838 130012192 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -47741 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 271-103 chr12 63867619 63867813 + 2 NA intron (NM_001346201, intron 1 of 21) intron (NM_001346201, intron 1 of 21) 23016 NM_001346201 57522 Hs.210751 NM_020762 ENSG00000196935 SRGAP1 ARHGAP13|NMTC2 SLIT-ROBO Rho GTPase activating protein 1 protein-coding 504-95 chr16 83372025 83372430 + 2 NA intron (NM_001220489, intron 5 of 12) MIR|SINE|MIR -136119 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 521-148 chr21 27019532 27019862 + 2 NA Intergenic L2a|LINE|L2 -52609 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 346-97 chr12 24469057 24469385 + 2 NA intron (NM_152989, intron 1 of 17) MER1A|DNA|hAT-Charlie 93270 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 378-155 chr16 24864648 24864929 + 2 NA intron (NM_001258412, intron 4 of 14) L1M4|LINE|L1 18557 NM_052944 115584 Hs.164118 NM_052944 ENSG00000158865 SLC5A11 KST1|RKST1|SGLT6|SMIT2 solute carrier family 5 member 11 protein-coding 296-103 chr12 39952790 39952977 + 2 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 153198 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 293-430 chr8 74167214 74167411 + 2 NA Intergenic Intergenic 154049 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 302-412 chr7 46994875 46995120 + 2 NA Intergenic L1MA9|LINE|L1 -297875 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 376-218 chr20 47064305 47064503 + 2 NA intron (NM_172110, intron 5 of 13) L1MB4|LINE|L1 -102563 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 204-48 chr11 116451665 116451833 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -187673 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 204-270 chr7 41821323 41821475 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -118309 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 499-256 chr8 35221411 35221829 + 2 NA Intergenic L1ME3G|LINE|L1 -13855 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 327-232 chr2 4435550 4435821 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 220537 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 389-401 chrX 120858445 120858677 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 17364 NM_001145718 643311 Hs.729566 NM_001145718 ENSG00000236446 CT47B1 CT47.13|CT47A13 cancer/testis antigen family 47 member B1 protein-coding 363-349 chr5 16316518 16316844 + 2 NA Intergenic Intergenic 124421 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 373-85 chr12 15141317 15141637 + 2 NA intron (NM_032918, intron 2 of 4) L1MC3|LINE|L1 -10446 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 328-62 chr10 107288222 107288447 + 2 NA Intergenic L1MA2|LINE|L1 -123628 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 743-29 chr17 69987103 69987627 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 25658 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 243-365 chr5 99566552 99566716 + 2 NA intron (NR_110562, intron 3 of 3) intron (NR_110562, intron 3 of 3) 32644 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 538-224 chr7 92891213 92891648 + 2 NA intron (NR_110087, intron 2 of 2) L1MA7|LINE|L1 -54803 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 434-24 chr1 218945035 218945385 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) -26699 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 459-256 chr6 22796583 22796968 + 2 NA Intergenic L1PA16|LINE|L1 -78851 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 304-122 chr12 115365135 115365334 + 2 NA Intergenic Intergenic -681059 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 241-212 chr2 238201449 238201648 + 2 NA intron (NM_030768, intron 1 of 11) intron (NM_030768, intron 1 of 11) 2147 NM_030768 80895 Hs.92033 NM_030768 ENSG00000132323 ILKAP ILKAP2|ILKAP3|PP2C-DELTA|PPM1O ILK associated serine/threonine phosphatase protein-coding 410-299 chr8 49766363 49766685 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -143272 NM_001321775 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 488-292 chr9 81305680 81306108 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 383641 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 375-158 chr16 72709994 72710192 + 2 NA Intergenic L1MEg|LINE|L1 -45123 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 262-365 chr6 48613377 48613625 + 2 NA Intergenic L3b|LINE|CR1 -544812 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 439-195 chr3 187508746 187509027 + 2 NA Intergenic MER4A|LTR|ERV1 61840 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 377-169 chr18 13305314 13305617 + 2 NA intron (NM_181482, intron 2 of 5) Tigger2|DNA|TcMar-Tigger 27360 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 746-83 chr8 103468683 103469284 + 2 NA Intergenic Intergenic 30248 NR_145704 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 283-276 chr22 39735426 39735601 + 2 NA Intergenic Intergenic 158247 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 351-64 chr11 25744147 25744359 + 2 NA Intergenic Intergenic -444870 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 341-427 chr5 29506791 29507095 + 2 NA Intergenic Intergenic -110967 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 314-89 chr11 28599577 28599828 + 2 NA Intergenic Intergenic -122154 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 297-202 chr2 22576221 22576394 + 2 NA Intergenic Intergenic 39828 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 329-543 chr7 67977248 67977569 + 2 NA Intergenic Intergenic -42845 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 389-113 chr15 60280042 60280348 + 2 NA Intergenic Intergenic 117791 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 483-141 chr20 50559776 50560134 + 2 NA intron (NM_001278618, intron 1 of 8) HAL1|LINE|L1 -25831 NR_030375 693230 NR_030375 ENSG00000208018 MIR645 MIRN645|hsa-mir-645 microRNA 645 ncRNA 664-75 chr3 86228363 86228858 + 2 NA Intergenic Intergenic -253333 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 328-381 chr3 196415617 196415852 + 2 NA intron (NM_015562, intron 1 of 10) AluSc5|SINE|Alu -15651 NR_046745 100874034 Hs.617990 NR_046745 UBXN7-AS1 - UBXN7 antisense RNA 1 ncRNA 371-129 chr16 49181659 49181875 + 2 NA Intergenic Intergenic 100071 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 263-236 chr20 61007217 61007467 + 2 NA Intergenic MIRb|SINE|MIR -71722 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 271-322 chr4 102023841 102024033 + 2 NA intron (NM_017935, intron 8 of 16) intron (NM_017935, intron 8 of 16) 210095 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 244-194 chr20 6841388 6841511 + 2 NA Intergenic Intergenic 73763 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 619-109 chr6 54170707 54171064 + 2 NA intron (NM_001281746, intron 9 of 11) intron (NM_001281746, intron 9 of 11) 59442 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 250-381 chr6 124342467 124342691 + 2 NA intron (NM_001040214, intron 2 of 6) AluSx3|SINE|Alu 59574 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 494-64 chr14 55529689 55530133 + 2 NA Intergenic L1MEd|LINE|L1 50181 NR_027123 100129075 Hs.633724 NR_027123 ENSG00000186615 KTN1-AS1 C14orf33|MYCLo-3 KTN1 antisense RNA 1 ncRNA 316-149 chr13 21795919 21796210 + 2 NA Intergenic Intergenic 82096 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 304-285 chr2 191990268 191990424 + 2 NA intron (NM_001305134, intron 7 of 9) intron (NM_001305134, intron 7 of 9) -143258 NM_004657 8436 Hs.26530 NM_004657 ENSG00000168497 CAVIN2 PS-p68|SDPR|SDR|cavin-2 caveolae associated protein 2 protein-coding 693-91 chr7 8046181 8046575 + 2 NA intron (NM_138426, intron 3 of 7) MER4B|LTR|ERV1 77582 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 353-262 chr2 172367186 172367434 + 2 NA Intergenic MLT1M|LTR|ERVL-MaLR -60026 NM_001316306 3655 Hs.133397 NM_000210 ENSG00000091409 ITGA6 CD49f|ITGA6B|VLA-6 integrin subunit alpha 6 protein-coding 313-355 chr3 100964892 100965071 + 2 NA intron (NM_001349332, intron 1 of 35) intron (NM_001349332, intron 1 of 35) 28509 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 184-107 chr20 18681652 18681829 + 2 NA intron (NR_109955, intron 2 of 3) L1MCa|LINE|L1 16968 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 233-175 chr2 103598699 103598861 + 2 NA Intergenic L1PA16|LINE|L1 -614351 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 389-154 chr2 4295164 4295455 + 2 NA Intergenic Intergenic 321148 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 693-100 chr8 65474393 65474942 + 2 NA Intergenic AluSz|SINE|Alu 87999 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 460-290 chr8 104050660 104051019 + 2 NA intron (NM_001348499, intron 19 of 23) intron (NM_001348499, intron 19 of 23) -172496 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 207-171 chr21 27509942 27510125 + 2 NA Intergenic Intergenic -212346 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 216-190 chr20 4522786 4522946 + 2 NA Intergenic L1MB5|LINE|L1 -163590 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 313-282 chr2 162576039 162576307 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -192763 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 346-417 chr6 44520990 44521236 + 2 NA Intergenic L1MA4A|LINE|L1 30768 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 360-244 chr2 165495363 165495602 + 2 NA intron (NM_001172173, intron 2 of 6) intron (NM_001172173, intron 2 of 6) 25784 NM_001172173 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 278-149 chr16 78302721 78302905 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 203159 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 395-67 chr12 39635674 39636020 + 2 NA intron (NM_001031748, intron 1 of 12) intron (NM_001031748, intron 1 of 12) 9664 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 304-406 chr5 19686220 19686399 + 2 NA intron (NM_001349562, intron 5 of 13) Tigger9b|DNA|TcMar-Tigger 199963 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 411-314 chr9 119907512 119907807 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -27401 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 447-70 chr14 47009921 47010238 + 2 NA intron (NM_001113498, intron 8 of 16) L2c|LINE|L2 333167 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 255-74 chr12 25503549 25503725 + 2 NA intron (NM_001145729, intron 8 of 8) intron (NM_001145729, intron 8 of 8) 49646 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 217-142 chr16 54954688 54954892 + 2 NA Intergenic Intergenic 23591 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 265-317 chr5 122540294 122540515 + 2 NA Intergenic Intergenic 44196 NR_134281 101927357 Hs.639856 NR_134281 LOC101927357 - uncharacterized LOC101927357 ncRNA 309-356 chr3 104925309 104925502 + 2 NA Intergenic Intergenic -441308 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 224-231 chr4 121279609 121279790 + 2 NA Intergenic LTR81B|LTR|Gypsy -52216 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 217-224 chr3 58720453 58720620 + 2 NA Intergenic Intergenic -53762 NM_138805 131177 Hs.61265 NM_138805 ENSG00000198643 FAM3D EF7|OIT1 family with sequence similarity 3 member D protein-coding 292-193 chr19 29159080 29159360 + 2 NA Intergenic MER102a|DNA|hAT-Charlie 53931 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 605-40 chr17 66934972 66935421 + 2 NA Intergenic L1ME4b|LINE|L1 -29511 NM_014405 27092 Hs.514423 NM_014405 ENSG00000075461 CACNG4 - calcium voltage-gated channel auxiliary subunit gamma 4 protein-coding 663-54 chr2 10668634 10669266 + 2 NA intron (NR_048552, intron 5 of 19) intron (NR_048552, intron 5 of 19) 21025 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 606-147 chr7 30262006 30262594 + 2 NA intron (NR_136267, intron 2 of 3) AluJb|SINE|Alu -22297 NM_147128 223082 Hs.263912 NM_147128 ENSG00000180233 ZNRF2 RNF202 zinc and ring finger 2 protein-coding 379-16 chr1 110126506 110126832 + 2 NA Intergenic Intergenic 14226 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 144-98 chr8 69374120 69374238 + 2 NA Intergenic LTR84b|LTR|ERVL 74065 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 124-5 chr1 227822503 227822601 + 2 NA intron (NM_183062, intron 3 of 4) L1M4|LINE|L1 6835 NM_183062 339501 Hs.97604 NM_183062 ENSG00000185888 PRSS38 MPN2 serine protease 38 protein-coding 254-93 chr13 34773514 34773732 + 2 NA Intergenic Intergenic -132938 NR_047036 100874179 Hs.569253 NR_047036 ENSG00000225179 LINC00457 - long intergenic non-protein coding RNA 457 ncRNA 231-320 chr6 169014820 169014983 + 2 NA Intergenic L1PA15|LINE|L1 20742 NR_134622 101929460 Hs.355225 NR_134622 ENSG00000229720 LOC101929460 - uncharacterized LOC101929460 ncRNA 246-216 chr2 195998754 195998908 + 2 NA intron (NM_018897, intron 12 of 64) L1MEd|LINE|L1 70006 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 376-76 chr11 104082142 104082453 + 2 NA intron (NM_025208, intron 1 of 6) intron (NM_025208, intron 1 of 6) 45657 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 303-471 chr8 129570442 129570719 + 2 NA intron (NR_130917, intron 1 of 3) L1M4|LINE|L1 4438 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 210-174 chr3 79194541 79194692 + 2 NA intron (NM_002941, intron 2 of 30) intron (NM_002941, intron 2 of 30) -175157 NM_001145845 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 264-67 chr10 120263065 120263242 + 2 NA Intergenic LTR79|LTR|ERVL 92070 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 569-23 chr10 51346451 51346847 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 47076 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 286-430 chr7 71768201 71768346 + 2 NA Intergenic (ATTTTT)n|Simple_repeat|Simple_repeat -460503 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 420-3 chr1 24444551 24444814 + 2 NA intron (NM_001322858, intron 5 of 12) intron (NM_001322858, intron 5 of 12) 28657 NM_001322857 57185 Hs.523442 NM_020448 ENSG00000001461 NIPAL3 DJ462O23.2|NPAL3 NIPA like domain containing 3 protein-coding 307-416 chr6 38383618 38383850 + 2 NA intron (NM_052893, intron 7 of 11) L1ME3D|LINE|L1 -97862 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 315-317 chr3 162548756 162548985 + 2 NA Intergenic HUERS-P1-int|LTR|ERV1 754431 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 478-92 chr14 94406623 94406954 + 2 NA Intergenic MER65-int|LTR|ERV1 -16096 NM_001127702 5265 Hs.525557 NM_000295 ENSG00000197249 SERPINA1 A1A|A1AT|AAT|PI|PI1|PRO2275|alpha1AT|nNIF serpin family A member 1 protein-coding 529-91 chr18 78045177 78045554 + 2 NA Intergenic Intergenic -51638 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 342-117 chr12 61027537 61027761 + 2 NA Intergenic L1MDa|LINE|L1 1165190 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 239-26 chr10 25453372 25453558 + 2 NA intron (NM_020752, intron 4 of 10) L1MA9|LINE|L1 -198247 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 672-40 chr17 33329263 33329704 + 2 NA intron (NM_001094, intron 1 of 9) MIR3|SINE|MIR -36495 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 303-360 chr5 66520132 66520376 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -8650 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 303-465 chr8 117649748 117650014 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 129168 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 235-206 chr20 62098835 62099057 + 2 NA Intergenic Intergenic -23529 NM_144703 149986 Hs.105379 NM_144703 ENSG00000149657 LSM14B C20orf40|FAM61B|FT005|LSM13|RAP55B|bA11M20.3 LSM family member 14B protein-coding 273-357 chr5 56557077 56557315 + 2 NA intron (NR_161255, intron 1 of 5) intron (NR_161255, intron 1 of 5) 49060 NR_161255 101928448 Hs.208052 NM_001287053 ENSG00000225940 C5orf67 - chromosome 5 open reading frame 67 ncRNA 188-216 chr9 28909128 28909308 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -20263 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 166-99 chr5 102704603 102704761 + 2 NA Intergenic Intergenic -33218 NR_103755 285708 Hs.533011 NR_103753 LINC00491 - long intergenic non-protein coding RNA 491 ncRNA 471-160 chr22 35497986 35498310 + 2 NA Intergenic Intergenic -42346 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 174-46 chr15 59755927 59756085 + 2 NA Intergenic Intergenic -66686 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 295-123 chr14 25833475 25833724 + 2 NA Intergenic UCON51|LTR?|LTR? 719831 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 693-39 chr15 92508123 92508629 + 2 NA Intergenic L1MEd|LINE|L1 36699 NR_161371 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 273-180 chr18 3356446 3356639 + 2 NA Intergenic L1MA9|LINE|L1 -5983 NR_146506 105371964 Hs.105326 NR_146506 ENSG00000259256 LINC01895 - long intergenic non-protein coding RNA 1895 ncRNA 397-218 chr4 17289435 17289667 + 2 NA Intergenic Intergenic 31331 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 292-248 chr20 9660575 9660823 + 2 NA intron (NM_020341, intron 3 of 10) L2a|LINE|L2 -145701 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 209-300 chr7 80463879 80464032 + 2 NA intron (NM_001102386, intron 5 of 7) intron (NM_001102386, intron 5 of 7) 48109 NM_001102386 346562 Hs.335049 NM_001102386 ENSG00000214415 GNAT3 GDCA G protein subunit alpha transducin 3 protein-coding 261-19 chr1 116259128 116259330 + 2 NA Intergenic Intergenic -114015 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 269-141 chr15 95967365 95967583 + 2 NA Intergenic Intergenic 160367 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 375-188 chr19 12461116 12461433 + 2 NA TTS (NM_152601) TTS (NM_152601) -20253 NM_005815 10224 Hs.636894 NM_005815 ENSG00000180855 ZNF443 ZK1 zinc finger protein 443 protein-coding 328-522 chr7 11243750 11244010 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 270008 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 332-457 chr6 63479792 63480093 + 2 NA Intergenic L2a|LINE|L2 -92070 NM_003463 7803 Hs.227777 NM_003463 ENSG00000112245 PTP4A1 HH72|PRL-1|PRL1|PTP(CAAX1)|PTPCAAX1 protein tyrosine phosphatase 4A1 protein-coding 433-295 chr9 26741550 26741882 + 2 NA Intergenic Intergenic 151086 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 605-102 chr6 131509772 131510329 + 2 NA Intergenic Intergenic -63176 NM_000045 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 292-196 chr19 36529818 36530022 + 2 NA Intergenic AluSx3|SINE|Alu -1649 NM_001166037 339324 Hs.18103 NM_001012756 ENSG00000254004 ZNF260 OZRF1|PEX1|ZFP260 zinc finger protein 260 protein-coding 253-157 chr17 55156964 55157190 + 2 NA intron (NM_178509, intron 17 of 17) intron (NM_178509, intron 17 of 17) -107883 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 194-160 chr5 15843855 15844041 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -91234 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 198-19 chr10 16826319 16826478 + 2 NA intron (NM_001081, intron 66 of 66) (TATG)n|Simple_repeat|Simple_repeat -8944 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 323-451 chr6 21356623 21356835 + 2 NA Intergenic Intergenic 155163 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 369-14 chr1 170038386 170038684 + 2 NA intron (NM_014970, intron 4 of 19) intron (NM_014970, intron 4 of 19) 30380 NM_001204517 22920 Hs.433442 NM_014970 ENSG00000075945 KIFAP3 FLA3|KAP-1|KAP-3|KAP3|SMAP|Smg-GDS|dJ190I16.1 kinesin associated protein 3 protein-coding 397-121 chr18 7540069 7540323 + 2 NA Intergenic Intergenic -27120 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 829-6 chr10 44494620 44495386 + 2 NA Intergenic AluSg7|SINE|Alu -109906 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 435-94 chr16 54922525 54922852 + 2 NA intron (NR_034106, intron 3 of 4) intron (NR_034106, intron 3 of 4) 6090 NR_110454 643911 Hs.237396 NM_001308963 CRNDE CRNDEP|LINC00180|NCRNA00180|PNAS-108|lincIRX5 colorectal neoplasia differentially expressed protein-coding 292-464 chr9 76011808 76011982 + 2 NA intron (NR_120409, intron 3 of 19) intron (NR_120409, intron 3 of 19) 121222 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 335-207 chr18 7905489 7905758 + 2 NA intron (NM_002845, intron 3 of 30) intron (NM_002845, intron 3 of 30) 338307 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 243-296 chr3 109222150 109222359 + 2 NA Intergenic Intergenic 44089 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 308-114 chr12 97346403 97346567 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -116291 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 384-41 chr10 75969716 75969999 + 2 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 187096 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 381-305 chr5 37917326 37917662 + 2 NA Intergenic Intergenic -30997 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 731-9 chr10 8788608 8789184 + 2 NA Intergenic (TCTTCC)n|Simple_repeat|Simple_repeat -109093 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 601-24 chr11 83996697 83997085 + 2 NA intron (NM_001142699, intron 11 of 27) L1MA1|LINE|L1 276389 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 501-233 chr7 261370 261702 + 2 NA TTS (NM_020223) TTS (NM_020223) 68965 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 326-126 chr12 56916093 56916305 + 2 NA Intergenic Intergenic 18209 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 143-9 chr10 65635578 65635704 + 2 NA intron (NR_120647, intron 3 of 5) L1MA6|LINE|L1 64216 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 259-115 chr14 54042507 54042707 + 2 NA Intergenic MER117|DNA|hAT-Charlie -85716 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 210-310 chr9 30322816 30323003 + 2 NA Intergenic Intergenic 85545 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 475-105 chr16 83391585 83391949 + 2 NA intron (NM_001220489, intron 5 of 12) MER20B|DNA|hAT-Charlie -116579 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 492-255 chr8 55685395 55685825 + 2 NA Intergenic Intergenic 87768 NM_001363177 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 285-20 chr1 190276199 190276459 + 2 NA intron (NM_001317188, intron 2 of 6) intron (NM_001317188, intron 2 of 6) 199681 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 296-387 chr5 155874420 155874576 + 2 NA Intergenic L1ME1|LINE|L1 -452259 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 218-127 chr17 74167253 74167448 + 2 NA Intergenic L1M2|LINE|L1 -36328 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 170-7 chr1 114995408 114995569 + 2 NA TTS (NR_104211) TTS (NR_104211) -34336 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 355-154 chr14 56518932 56519158 + 2 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 4714 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 1104-7 chr22 26136374 26137122 + 2 NA Intergenic Intergenic -32714 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 255-163 chr17 65646159 65646384 + 2 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -84623 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 239-136 chr17 72301355 72301510 + 2 NA Intergenic MIR|SINE|MIR -41379 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 283-103 chr12 66423363 66423578 + 2 NA intron (NM_001366722, intron 14 of 24) MER102a|DNA|hAT-Charlie 120925 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 229-11 chr1 94159280 94159430 + 2 NA Intergenic L1MEg|LINE|L1 -38207 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 536 chr1 5458631 5458986 + 2 NA Intergenic Intergenic 403933 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 265-244 chr3 99242776 99242994 + 2 NA Intergenic L1MA4|LINE|L1 -341190 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 374-362 chr7 64046684 64046888 + 2 NA intron (NM_001159522, intron 1 of 3) MER57E3|LTR|ERV1 1352 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 322-532 chr8 90100584 90100851 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -17838 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 178-97 chr4 61902788 61902921 + 2 NA intron (NM_001371343, intron 11 of 23) intron (NM_001371343, intron 11 of 23) 258911 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 262-68 chr11 13478708 13478860 + 2 NA Intergenic Intergenic -15487 NM_001297741 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 302-66 chr11 15421434 15421625 + 2 NA Intergenic L1M5|LINE|L1 -222356 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 118-48 chr6 111091332 111091444 + 2 NA intron (NM_018593, intron 1 of 5) intron (NM_018593, intron 1 of 5) 3885 NM_018593 117247 Hs.591327 NM_018593 ENSG00000112394 SLC16A10 MCT10|PRO0813|TAT1 solute carrier family 16 member 10 protein-coding 544-181 chr5 82901079 82901483 + 2 NA Intergenic L1M4|LINE|L1 -41445 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 382-318 chr5 19262950 19263301 + 2 NA Intergenic Intergenic 623147 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 743-51 chr22 22330850 22331399 + 2 NA Intergenic Intergenic 33026 NR_027293 96610 Hs.449601 NM_080926 BMS1P20 IGL|IGLV|IGLV1 BMS1 pseudogene 20 pseudo 493-106 chr17 54886359 54886698 + 2 NA Intergenic Intergenic -14163 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 150-2 chr1 86080937 86081019 + 2 NA intron (NM_152890, intron 7 of 59) Tigger6a|DNA|TcMar-Tigger 75493 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 417-83 chr14 59199299 59199676 + 2 NA intron (NM_001270520, intron 1 of 24) intron (NM_001270520, intron 1 of 24) 10820 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 346-160 chr15 66822132 66822432 + 2 NA Intergenic Intergenic 120046 NR_027654 4091 Hs.153863 NM_005585 ENSG00000137834 SMAD6 AOVD2|HsT17432|MADH6|MADH7 SMAD family member 6 protein-coding 300-470 chr8 85943315 85943535 + 2 NA Intergenic Intergenic -115483 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 282-342 chr4 60263168 60263379 + 2 NA Intergenic Intergenic -659346 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 582-15 chr11 50379023 50379389 + 2 NA Intergenic ALR/Alpha|Satellite|centr -29941 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 128-82 chr8 118966974 118967065 + 2 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) 14756 NM_001324095 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 266-277 chr4 36305302 36305516 + 2 NA intron (NM_001170700, intron 5 of 9) THE1B|LTR|ERVL-MaLR 23793 NM_001170700 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 498-232 chr6 40911008 40911354 + 2 NA intron (NR_110873, intron 1 of 5) L2c|LINE|L2 112099 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 307-434 chr6 146136589 146136770 + 2 NA intron (NM_001278065, intron 2 of 9) L1MA3|LINE|L1 107481 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 196-224 chr6 65151681 65151804 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -149676 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 214-89 chr13 40973312 40973479 + 2 NA intron (NM_001370329, intron 2 of 9) intron (NM_001370329, intron 2 of 9) 8887 NM_001145353 1997 Hs.135646 NM_172373 ENSG00000120690 ELF1 EFTUD1|RIA1 E74 like ETS transcription factor 1 protein-coding 322-85 chr11 36218701 36218988 + 2 NA intron (NM_001304264, intron 4 of 5) L1ME3G|LINE|L1 70580 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 397-191 chr21 18505538 18505867 + 2 NA Intergenic L1MA6|LINE|L1 -101917 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 380-198 chr2 138252870 138253203 + 2 NA Intergenic Intergenic 151152 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 286-53 chr10 112118534 112118731 + 2 NA Intergenic L1MB7|LINE|L1 65133 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 341-455 chr5 165975856 165976167 + 2 NA Intergenic Intergenic 950359 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 217-75 chr11 85115015 85115204 + 2 NA intron (NM_001142699, intron 5 of 27) intron (NM_001142699, intron 5 of 27) -191688 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 355-7 chr1 60470122 60470400 + 2 NA Intergenic L3|LINE|CR1 152424 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 267-172 chr2 25788753 25788989 + 2 NA intron (NM_001369347, intron 1 of 9) L1M5|LINE|L1 5820 NM_001369347 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 373-413 chr8 83903886 83904176 + 2 NA Intergenic Looper|DNA|PiggyBac -278756 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 247-392 chr7 141262210 141262410 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) 188246 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 363-16 chr1 113236149 113236359 + 2 NA Intergenic L1MC5|LINE|L1 -30001 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 268-364 chr7 27388073 27388270 + 2 NA Intergenic Intergenic -140942 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 322-204 chr17 62867895 62868067 + 2 NA Intergenic Intergenic 59479 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 225-337 chr7 112451510 112451704 + 2 NA promoter-TSS (NM_001197079) promoter-TSS (NM_001197079) -451 NM_001197079 3475 Hs.7879 NM_001550 ENSG00000006652 IFRD1 PC4|TIS7 interferon related developmental regulator 1 protein-coding 760-9 chr10 74223729 74224299 + 2 NA intron (NM_001202449, intron 2 of 9) AluSz|SINE|Alu 47251 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 387-353 chr8 21172743 21173105 + 2 NA Intergenic Intergenic -125315 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 598-70 chr2 29298709 29299101 + 2 NA intron (NM_004304, intron 8 of 28) intron (NM_004304, intron 8 of 28) -75005 NM_001353765 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 322-405 chr5 8229525 8229695 + 2 NA Intergenic LTR16A|LTR|ERVL 227954 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 294-331 chr4 55570029 55570222 + 2 NA intron (NM_152401, intron 3 of 5) intron (NM_152401, intron 3 of 5) 22120 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 370-424 chr7 84966089 84966412 + 2 NA Intergenic L1MA8|LINE|L1 155681 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 343-46 chr10 29299092 29299380 + 2 NA intron (NM_032517, intron 3 of 4) MER1A|DNA|hAT-Charlie 10166 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 247-213 chr2 124339265 124339452 + 2 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 314071 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 332-103 chr11 99773020 99773320 + 2 NA intron (NM_175566, intron 1 of 21) L1ME3A|LINE|L1 217025 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 294-193 chr2 4065038 4065204 + 2 NA Intergenic Intergenic 90960 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 269-248 chr3 31932814 31933074 + 2 NA intron (NM_001174060, intron 1 of 10) L1ME1|LINE|L1 -48806 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 405-128 chr2 12215813 12216087 + 2 NA intron (NR_110196, intron 3 of 5) AluSx|SINE|Alu 16820 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 596-180 chrX 44577513 44578082 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -34938 NM_173794 139341 Hs.7549 NM_173794 ENSG00000069509 FUNDC1 - FUN14 domain containing 1 protein-coding 236-340 chr7 123744739 123744900 + 2 NA intron (NM_003941, intron 1 of 10) intron (NM_003941, intron 1 of 10) 4184 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB WASP like actin nucleation promoting factor protein-coding 139-22 chr12 44916259 44916364 + 2 NA Intergenic Intergenic -2383 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 385-383 chr8 110800915 110801253 + 2 NA Intergenic Intergenic 226349 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 328-52 chr10 44867950 44868172 + 2 NA intron (NR_033842, intron 2 of 7) L1ME1|LINE|L1 -43255 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 139-57 chr3 145992480 145992571 + 2 NA Intergenic Intergenic 76660 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 470-198 chr4 91564125 91564519 + 2 NA intron (NM_001145065, intron 10 of 10) L1PA14|LINE|L1 712980 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 216-349 chr9 36950082 36950285 + 2 NA intron (NR_104000, intron 6 of 9) intron (NR_104000, intron 6 of 9) -56652 NR_039687 100616456 NR_039687 ENSG00000265368 MIR4476 mir-4476 microRNA 4476 ncRNA 426-237 chr5 85154735 85155096 + 2 NA Intergenic L1M5|LINE|L1 -770035 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 233-248 chr3 181351099 181351231 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 91321 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 357-23 chr1 216950307 216950550 + 2 NA intron (NM_001350124, intron 1 of 9) intron (NM_001350124, intron 1 of 9) -10755 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 218-190 chr20 54404522 54404695 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -70985 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 420-165 chr20 13910050 13910286 + 2 NA intron (NR_073206, intron 6 of 20) MIRb|SINE|MIR 80446 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 391-242 chr3 150088210 150088527 + 2 NA Intergenic AluSz|SINE|Alu -8075 NR_136187 105374313 Hs.151216 NR_136187 LOC105374313 - uncharacterized LOC105374313 ncRNA 333-574 chr8 98620626 98620890 + 2 NA intron (NM_001256313, intron 4 of 8) L1MDa|LINE|L1 193800 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 350-394 chr5 54720992 54721301 + 2 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) -17822 NR_104659 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 698-51 chr21 23567890 23568515 + 2 NA Intergenic MER4B|LTR|ERV1 -183367 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 175-70 chr18 33440124 33440241 + 2 NA intron (NM_001371120, intron 1 of 23) intron (NM_001371120, intron 1 of 23) 389 NM_001371121 265-133 chr16 10032555 10032730 + 2 NA intron (NM_001134408, intron 2 of 13) MIR|SINE|MIR 149425 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 559-18 chr10 104387247 104387643 + 2 NA intron (NM_001008723, intron 9 of 17) MLT1H2|LTR|ERVL-MaLR 33612 NM_001008723 159686 Hs.253576 NM_001008723 ENSG00000120051 CFAP58 C10orf80|CCDC147|bA127L20.4|bA127L20.5|bA554P13.1 cilia and flagella associated protein 58 protein-coding 193-86 chr18 47565994 47566109 + 2 NA intron (NR_147192, intron 1 of 2) MIRb|SINE|MIR 185555 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 114-5 chr10 56632685 56632765 + 2 NA Intergenic L2a|LINE|L2 -271452 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 328-302 chr2 225726150 225726409 + 2 NA Intergenic Intergenic 325393 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 584-114 chr4 57937984 57938454 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 512347 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 240-441 chr9 118955705 118955898 + 2 NA Intergenic L2a|LINE|L2 276130 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 165-83 chr3 116579711 116579864 + 2 NA Intergenic Intergenic 27314 NR_046624 100861506 Hs.641878 NR_046624 LINC00903 LSAMP-AS2 long intergenic non-protein coding RNA 903 ncRNA 336-497 chr6 146080851 146081062 + 2 NA intron (NM_001278065, intron 2 of 9) intron (NM_001278065, intron 2 of 9) 51758 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 334-11 chr1 67480700 67480915 + 2 NA Intergenic Intergenic -50405 NM_015640 26135 Hs.530412 NM_015640 ENSG00000142864 SERBP1 CGI-55|CHD3IP|HABP4L|PAI-RBP1|PAIRBP1 SERPINE1 mRNA binding protein 1 protein-coding 415-134 chr2 126210182 126210529 + 2 NA Intergenic Intergenic -92370 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 443-72 chr12 113625338 113625607 + 2 NA Intergenic L1MC3|LINE|L1 148211 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 679-54 chr2 151074071 151074646 + 2 NA Intergenic HAL1|LINE|L1 187505 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 290-115 chr12 124196795 124197027 + 2 NA intron (NM_001347902, intron 3 of 4) intron (NM_001347902, intron 3 of 4) -92253 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 330-38 chr1 194135179 194135409 + 2 NA Intergenic L1M7|LINE|L1 830549 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 262-325 chr4 105093043 105093299 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -52704 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 351-22 chr1 210285072 210285375 + 2 NA Intergenic Intergenic -43029 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 869-4 chr1 178807317 178808157 + 2 NA intron (NM_152663, intron 4 of 19) HAL1|LINE|L1 63340 NM_004673 9068 Hs.591474 NM_004673 ENSG00000116194 ANGPTL1 ANG3|ANGPT3|ARP1|AngY|UNQ162|dJ595C2.2 angiopoietin like 1 protein-coding 323-119 chr12 108671461 108671695 + 2 NA intron (NM_001105237, intron 3 of 10) HAL1M8|LINE|L1 31420 NM_001105237 23603 Hs.330384 NM_014325 ENSG00000110880 CORO1C HCRNN4 coronin 1C protein-coding 332-136 chr13 36799400 36799622 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -19691 NM_000538 5994 Hs.24422 NM_000538 ENSG00000133111 RFXAP - regulatory factor X associated protein protein-coding 412-268 chr5 159378789 159379180 + 2 NA Intergenic L1PB2|LINE|L1 47466 NR_037889 285626 Hs.449275 NR_037889 ENSG00000249738 LOC285626 - uncharacterized LOC285626 ncRNA 217-116 chr14 61821679 61821797 + 2 NA intron (NM_001367656, intron 1 of 7) MLT1F2|LTR|ERVL-MaLR 9035 NM_001367659 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 510-140 chr2 51444404 51444770 + 2 NA intron (NR_135237, intron 4 of 10) L1ME3A|LINE|L1 411986 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 207-159 chr20 16428983 16429148 + 2 NA intron (NM_001199866, intron 13 of 22) intron (NM_001199866, intron 13 of 22) 144383 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 264-448 chrUn_GL000216v2 32541 32791 + 2 NA NA (CATTC)n|Satellite|Satellite NA NA 337-356 chr3 89743010 89743195 + 2 NA Intergenic L2|LINE|L2 635481 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 370-184 chr17 70099427 70099636 + 2 NA intron (NM_001270422, intron 1 of 5) L3|LINE|CR1 -5314 NM_170742 3773 Hs.463985 NM_018658 ENSG00000153822 KCNJ16 BIR9|KIR5.1 potassium voltage-gated channel subfamily J member 16 protein-coding 339-187 chr16 3836829 3837013 + 2 NA intron (NM_004380, intron 2 of 30) Tigger3b|DNA|TcMar-Tigger 43199 NM_001079846 1387 Hs.459759 NM_004380 ENSG00000005339 CREBBP CBP|KAT3A|MKHK1|RSTS|RSTS1 CREB binding protein protein-coding 501-254 chr8 55612474 55612836 + 2 NA Intergenic Intergenic -91677 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 288-347 chr5 148001613 148001759 + 2 NA Intergenic MER61A|LTR|ERV1 -62286 NM_006846 11005 Hs.331555 NM_006846 ENSG00000133710 SPINK5 LEKTI|LETKI|NETS|NS|VAKTI serine peptidase inhibitor, Kazal type 5 protein-coding 421-134 chr2 49474061 49474419 + 2 NA Intergenic L1M7|LINE|L1 -319713 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 284-239 chr20 58476378 58476520 + 2 NA intron (NR_130908, intron 1 of 1) AluSc8|SINE|Alu 38489 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 430-97 chr15 70589651 70590029 + 2 NA Intergenic Intergenic -3234 NR_135691 101929151 Hs.434703 NR_135691 ENSG00000280639 LINC02204 - long intergenic non-protein coding RNA 2204 ncRNA 359-508 chr9 38447378 38447665 + 2 NA Intergenic L1MA6|LINE|L1 -23067 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 293-193 chr2 98098365 98098565 + 2 NA intron (NR_144297, intron 2 of 18) L1MA8|LINE|L1 11298 NM_144992 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 354-80 chr11 48706585 48706783 + 2 NA Intergenic ALR/Alpha|Satellite|centr 217891 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 521-7 chr1 93148917 93149390 + 2 NA TTS (NR_030761) TTS (NR_030761) 31260 NR_030761 50999 Hs.482873 NM_016040 ENSG00000117500 TMED5 CGI-100|p24g2|p28 transmembrane p24 trafficking protein 5 protein-coding 308-25 chr1 115164315 115164516 + 2 NA Intergenic L1ME2|LINE|L1 -74912 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 563-128 chr3 125157947 125158494 + 2 NA intron (NM_001195483, intron 4 of 12) AluSz|SINE|Alu -6668 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 340-14 chr1 81370377 81370659 + 2 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 64123 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 370-455 chr8 131735975 131736216 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -167998 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 164-41 chr15 88349397 88349485 + 2 NA Intergenic Intergenic -92702 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 353-304 chr22 27838140 27838386 + 2 NA Intergenic L1ME3C|LINE|L1 -36507 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 233-119 chr16 64170607 64170751 + 2 NA Intergenic L2c|LINE|L2 951384 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 657-51 chr2 136660200 136660603 + 2 NA Intergenic MIR3|SINE|MIR -105144 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 440-25 chr10 63012986 63013328 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -120090 NM_001282405 29982 Hs.449628 NM_030759 ENSG00000148572 NRBF2 COPR|COPR1|COPR2|NRBF-2 nuclear receptor binding factor 2 protein-coding 252-15 chr1 113862408 113862611 + 2 NA intron (NM_012411, intron 1 of 18) intron (NM_012411, intron 1 of 18) 5874 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 124-4 chr1 225181488 225181551 + 2 NA intron (NM_001367479, intron 36 of 85) L1PA17|LINE|L1 246519 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 226-315 chr7 2416516 2416683 + 2 NA intron (NM_018641, intron 1 of 1) Tigger1|DNA|TcMar-Tigger 12988 NM_001243794 55501 Hs.288853 NM_018641 ENSG00000136213 CHST12 C4S-2|C4ST-2|C4ST2 carbohydrate sulfotransferase 12 protein-coding 384-60 chr11 81416016 81416222 + 2 NA Intergenic L1MA9|LINE|L1 474717 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 428-178 chr3 70708426 70708748 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger 356337 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 301-439 chr8 46518703 46518899 + 2 NA Intergenic ALR/Alpha|Satellite|centr 98842 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 420-140 chr2 80443889 80444161 + 2 NA intron (NM_001282599, intron 3 of 11) MIRb|SINE|MIR 130646 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 281-30 chr1 242112674 242112884 + 2 NA intron (NM_001320272, intron 8 of 10) intron (NM_001320272, intron 8 of 10) -113681 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 460-70 chr12 97303988 97304309 + 2 NA Intergenic Intergenic -158628 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 259-95 chr13 20445196 20445415 + 2 NA intron (NM_015974, intron 3 of 7) L1MEg|LINE|L1 -11459 NR_039721 100616304 NR_039721 ENSG00000263978 MIR4499 - microRNA 4499 ncRNA 202-89 chr16 77508346 77508507 + 2 NA Intergenic Intergenic -73392 NM_199355 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 575-145 chr5 28835670 28836120 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -90975 NR_033961 729862 Hs.646006 NR_033961 LSP1P3 - LSP1 pseudogene 3 pseudo 370-22 chr1 182176611 182176974 + 2 NA Intergenic L1MA9|LINE|L1 -115080 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 289-347 chr4 116022450 116022663 + 2 NA Intergenic L1MA9|LINE|L1 -277169 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 339-91 chr11 36478808 36479121 + 2 NA Intergenic Intergenic 31308 NM_004620 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 405-164 chr2 171555060 171555294 + 2 NA 3' UTR (NM_001127383, exon 3 of 3) 3' UTR (NM_001127383, exon 3 of 3) 32703 NM_001127383 79901 Hs.221941 NM_024843 ENSG00000071967 CYBRD1 CYB561A2|DCYTB|FRRS3 cytochrome b reductase 1 protein-coding 583-10 chr1 217265563 217266025 + 2 NA Intergenic MER33|DNA|hAT-Charlie -128092 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 328-267 chr2 89838583 89838789 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat -200779 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 183-5 chr1 191546720 191546877 + 2 NA Intergenic Intergenic -318300 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 165-94 chr4 112474109 112474259 + 2 NA Intergenic L1MEc|LINE|L1 -41195 NR_161159 105377372 NR_161159 LOC105377372 - uncharacterized LOC105377372 ncRNA 304-109 chr12 40390174 40390414 + 2 NA Intergenic L2a|LINE|L2 -3100 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 496-50 chr11 105989696 105990106 + 2 NA Intergenic Intergenic 32339 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 285-293 chr3 190887585 190887780 + 2 NA Intergenic L2|LINE|L2 9752 NR_024343 100170222 Hs.717310 NR_024343 SNAR-I snaR-3 small NF90 (ILF3) associated RNA I snRNA 383-186 chr2 71937523 71937760 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 210221 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 574-51 chr16 65629262 65629777 + 2 NA Intergenic Intergenic -53219 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 331-529 chr8 81529489 81529665 + 2 NA exon (NM_001105281, exon 2 of 4) exon (NM_001105281, exon 2 of 4) 1813 NM_001105281 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 628-42 chr14 56319281 56319900 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -194741 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 346-229 chr2 18274274 18274458 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 286287 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 322-132 chr12 96340690 96340870 + 2 NA intron (NM_002595, intron 1 of 16) intron (NM_002595, intron 1 of 16) 59659 NM_002595 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 623-54 chr2 17821409 17821995 + 2 NA Intergenic Intergenic 5242 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 201-213 chr6 18808103 18808244 + 2 NA Intergenic L1ME1|LINE|L1 236389 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 398-68 chr12 19702139 19702434 + 2 NA Intergenic L1PA15|LINE|L1 261687 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 220-309 chr5 167676547 167676712 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -78300 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 513-213 chr4 156031654 156032060 + 2 NA Intergenic AluSx|SINE|Alu -77991 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 342-552 chr9 74592334 74592643 + 2 NA intron (NM_006914, intron 1 of 9) MamRTE1|LINE|RTE-BovB -23046 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 696-106 chr8 99921329 99921917 + 2 NA Intergenic L1MEg|LINE|L1 -27916 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 503-135 chr19 36553685 36554003 + 2 NA intron (NM_001352273, intron 3 of 5) Tigger4b|DNA|TcMar-Tigger -19226 NR_110703 101927599 Hs.515376 NR_110703 ENSG00000233527 ZNF529-AS1 - ZNF529 antisense RNA 1 ncRNA 353-100 chr12 15873629 15873862 + 2 NA Intergenic L1M5|LINE|L1 -8642 NM_007178 11171 Hs.743971 NM_007178 ENSG00000023734 STRAP MAWD|PT-WD|UNRIP serine/threonine kinase receptor associated protein protein-coding 346-91 chr12 14622200 14622492 + 2 NA intron (NM_004963, intron 21 of 26) intron (NM_004963, intron 21 of 26) -54463 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 310-262 chr2 135500234 135500510 + 2 NA intron (NM_001286569, intron 2 of 21) L1ME3A|LINE|L1 30213 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 616-57 chr16 76756463 76756887 + 2 NA Intergenic L1MC3|LINE|L1 -112261 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 835-49 chr7 19540580 19541275 + 2 NA Intergenic Intergenic 164509 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 210-257 chr7 15652414 15652575 + 2 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) -15453 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 371-42 chr10 37807853 37808162 + 2 NA intron (NM_001352493, intron 5 of 6) L1M4c|LINE|L1 -12832 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 234-261 chr3 180878101 180878299 + 2 NA Intergenic Intergenic -8022 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 348-85 chr11 79912084 79912353 + 2 NA Intergenic LTR16B2|LTR|ERVL -471188 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 295-483 chr8 130638376 130638661 + 2 NA Intergenic Intergenic -194844 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 365-199 chr2 108234507 108234700 + 2 NA Intergenic L1MB2|LINE|L1 -5365 NM_001320878 442038 NM_001008743 ENSG00000196228 SULT1C3 ST1C3 sulfotransferase family 1C member 3 protein-coding 437-158 chr20 39765241 39765603 + 2 NA Intergenic L1MCb|LINE|L1 -239039 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 218-289 chr6 87221422 87221556 + 2 NA intron (NM_015021, intron 4 of 7) L3|LINE|CR1 65924 NM_015021 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 427-149 chr22 46177963 46178338 + 2 NA intron (NM_001362872, intron 3 of 8) intron (NM_001362872, intron 3 of 8) 27355 NM_001362873 5465 Hs.103110 NM_005036 ENSG00000186951 PPARA NR1C1|PPAR|PPARalpha|hPPAR peroxisome proliferator activated receptor alpha protein-coding 201-189 chr5 26408064 26408226 + 2 NA Intergenic Intergenic 630441 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 315-378 chr5 53518561 53518863 + 2 NA Intergenic Intergenic 38083 NM_006350 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 249-267 chr3 96744752 96744940 + 2 NA Intergenic Intergenic -69748 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 410-127 chr2 16862077 16862351 + 2 NA Intergenic Intergenic -196380 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 268-9 chr1 81026300 81026539 + 2 NA Intergenic (TGAA)n|Simple_repeat|Simple_repeat -279773 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 345-261 chr2 78914097 78914277 + 2 NA Intergenic Intergenic -111515 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 508-33 chr10 109808509 109808866 + 2 NA Intergenic L1ME2|LINE|L1 114559 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 236-126 chr15 60012758 60012931 + 2 NA Intergenic Intergenic 8533 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 358-276 chr21 34222804 34223068 + 2 NA Intergenic Intergenic 42259 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 367-82 chr11 106485838 106486025 + 2 NA Intergenic Intergenic 234524 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 254-68 chr11 120103744 120103904 + 2 NA Intergenic Intergenic 25029 NM_001330382 23650 Hs.504115 NM_012101 ENSG00000137699 TRIM29 ATDC tripartite motif containing 29 protein-coding 334-442 chr5 141030942 141031117 + 2 NA Intergenic L1MA9|LINE|L1 -20347 NM_013340 29930 Hs.278950 NM_013340 ENSG00000171815 PCDHB1 PCDH-BETA1 protocadherin beta 1 protein-coding 176-92 chr3 178114042 178114169 + 2 NA Intergenic L1MEf|LINE|L1 297240 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 397-211 chr3 117755151 117755401 + 2 NA Intergenic Intergenic -64351 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 355-258 chr2 154285534 154285771 + 2 NA intron (NM_052917, intron 8 of 12) L1MA5A|LINE|L1 171786 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 365-301 chr4 115628878 115629128 + 2 NA Intergenic Intergenic -515383 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 333-182 chr17 6873659 6873827 + 2 NA intron (NR_002710, intron 2 of 13) intron (NR_002710, intron 2 of 13) -20034 NR_120453 245 Hs.378695 NR_002710 ENSG00000262943 ALOX12P2 ALOX12E arachidonate 12-lipoxygenase pseudogene 2 pseudo 245-27 chr1 242692270 242692447 + 2 NA Intergenic Intergenic -167661 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 228-251 chr4 97353451 97353589 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -13406 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 311-308 chr20 55190489 55190698 + 2 NA Intergenic L2a|LINE|L2 -232450 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 276-69 chr10 119379367 119379546 + 2 NA intron (NM_005308, intron 2 of 15) intron (NM_005308, intron 2 of 15) 1484 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 497-63 chr12 117457849 117458273 + 2 NA 3' UTR (NM_173598, exon 20 of 20) 3' UTR (NM_173598, exon 20 of 20) -96259 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 192-114 chr2 221140353 221140485 + 2 NA Intergenic Intergenic 431885 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 384-32 chr10 20790793 20791069 + 2 NA intron (NM_001173484, intron 5 of 6) intron (NM_001173484, intron 5 of 6) 106671 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 402-337 chr8 52988839 52989164 + 2 NA Intergenic Intergenic 49093 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 251-159 chr2 23081183 23081368 + 2 NA Intergenic L1M4b|LINE|L1 -303904 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 373-132 chr15 76716237 76716601 + 2 NA intron (NR_148227, intron 17 of 32) L1MA9|LINE|L1 129772 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 361-477 chr9 72052088 72052275 + 2 NA 3' UTR (NM_001128618, exon 5 of 5) 3' UTR (NM_001128618, exon 5 of 5) 8424 NM_001128618 138240 Hs.371235 NM_001128618 ENSG00000204669 C9orf57 - chromosome 9 open reading frame 57 protein-coding 284-87 chr12 47056330 47056477 + 2 NA Intergenic Intergenic -23200 NM_001281429 91523 Hs.560100 NM_138371 ENSG00000179715 PCED1B FAM113B PC-esterase domain containing 1B protein-coding 672-26 chr14 41482967 41483440 + 2 NA Intergenic Intergenic -123653 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 324-115 chr12 26255366 26255649 + 2 NA Intergenic L1PA8A|LINE|L1 59934 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 699-21 chr12 18821656 18822280 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger 83849 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 180-168 chr8 81830938 81831099 + 2 NA intron (NM_001348189, intron 4 of 9) L1PA16|LINE|L1 11167 NR_145475 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 333-172 chr15 101581261 101581561 + 2 NA Intergenic Intergenic 32928 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 220-131 chr17 53365375 53365561 + 2 NA Intergenic Intergenic 379963 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 234-296 chr5 5952580 5952755 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 384625 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 206-102 chr19 44130808 44130954 + 2 NA exon (NM_001321685, exon 6 of 6) exon (NM_001321685, exon 6 of 6) -10673 NM_001144824 10780 Hs.235992 NM_006630 ENSG00000263002 ZNF234 HZF4|ZNF269 zinc finger protein 234 protein-coding 206-118 chr2 82769644 82769814 + 2 NA Intergenic L1M2|LINE|L1 -87074 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 373-225 chr2 195013984 195014267 + 2 NA Intergenic Intergenic 283530 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 310-82 chr11 79919066 79919230 + 2 NA Intergenic Intergenic -478118 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 346-141 chr14 76558843 76559131 + 2 NA Intergenic L1MC4|LINE|L1 187640 NM_004452 2103 Hs.435845 NM_004452 ENSG00000119715 ESRRB DFNB35|ERR2|ERRb|ESRL2|NR3B2 estrogen related receptor beta protein-coding 383-162 chr18 5037858 5038151 + 2 NA Intergenic AluSx1|SINE|Alu -43178 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 180-159 chr7 80844506 80844625 + 2 NA intron (NM_006379, intron 2 of 17) MIR|SINE|MIR 74486 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 336-478 chr6 14961462 14961637 + 2 NA Intergenic AluSz|SINE|Alu -284520 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 535-112 chr18 52924079 52924563 + 2 NA intron (NM_005215, intron 4 of 28) L1MA9|LINE|L1 -312780 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 343-572 chr9 11253911 11254116 + 2 NA Intergenic L1PA10|LINE|L1 640807 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 276-400 chr6 53876932 53877108 + 2 NA intron (NM_018214, intron 2 of 13) THE1B-int|LTR|ERVL-MaLR -52962 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 392-218 chr3 171516764 171517021 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -56484 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 257-279 chr3 140065958 140066171 + 2 NA intron (NM_022131, intron 1 of 16) MIRb|SINE|MIR 130879 NM_022131 64084 Hs.158529 NM_022131 ENSG00000158258 CLSTN2 ALC-GAMMA|CDHR13|CS2|CSTN2|alcagamma calsyntenin 2 protein-coding 408-305 chr6 141080646 141080918 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR 396968 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 371-388 chr8 100578983 100579225 + 2 NA intron (NM_152628, intron 12 of 13) intron (NM_152628, intron 12 of 13) -19345 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 295-329 chr4 44002167 44002407 + 2 NA Intergenic Intergenic -14574 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 118-34 chr3 67807357 67807436 + 2 NA intron (NR_109992, intron 3 of 6) intron (NR_109992, intron 3 of 6) 152699 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 114-36 chr3 24598945 24599053 + 2 NA Intergenic Intergenic -103291 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 425-55 chr11 50680845 50681057 + 2 NA Intergenic ALR/Alpha|Satellite|centr 271804 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 234-124 chr16 78519717 78519914 + 2 NA intron (NM_001291997, intron 7 of 7) MLT1A0|LTR|ERVL-MaLR 420161 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 378-16 chr1 90809004 90809221 + 2 NA intron (NR_135038, intron 1 of 2) intron (NR_135038, intron 1 of 2) 27049 NR_147932 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 149-93 chr7 51821325 51821416 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -428114 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 398-81 chr12 87903783 87904157 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -119259 NR_033410 400058 Hs.572212 NR_033410 MKRN9P MKRN5|MKRN9|MKRNP6|RNF65|ZNF127L3 makorin ring finger protein 9, pseudogene pseudo 574-170 chr7 89049773 89050245 + 2 NA intron (NM_181646, intron 1 of 3) AluSx|SINE|Alu -254272 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 138-17 chr13 55690940 55691037 + 2 NA Intergenic Intergenic 516534 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 370-369 chr5 55294564 55294892 + 2 NA intron (NR_144323, intron 5 of 26) intron (NR_144323, intron 5 of 26) 12966 NR_144324 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 318-535 chr8 62085482 62085659 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -163284 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 260-108 chr12 105094135 105094284 + 2 NA Intergenic L1ME1|LINE|L1 -9751 NM_001034173 160428 Hs.42572 NM_001034173 ENSG00000136010 ALDH1L2 mtFDH aldehyde dehydrogenase 1 family member L2 protein-coding 637-59 chr2 35659651 35660072 + 2 NA Intergenic Intergenic 188456 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 235-94 chr13 96212276 96212417 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 121507 NM_153456 266722 Hs.171001 NM_153456 ENSG00000185352 HS6ST3 HS6ST-3 heparan sulfate 6-O-sulfotransferase 3 protein-coding 187-24 chr10 76844477 76844608 + 2 NA Intergenic L1M4b|LINE|L1 -43502 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 343-124 chr13 55636929 55637192 + 2 NA Intergenic L1M4c|LINE|L1 462606 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 218-163 chr2 116631055 116631214 + 2 NA Intergenic Intergenic -1183557 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 471-139 chr2 132602452 132602862 + 2 NA intron (NM_001508, intron 1 of 1) L1MA5|LINE|L1 67548 NM_001321235 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 340-390 chr4 31713423 31713742 + 2 NA Intergenic Intergenic 207038 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 213-74 chr12 103319980 103320180 + 2 NA intron (NM_001099336, intron 4 of 5) intron (NM_001099336, intron 4 of 5) 168238 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 215-349 chrX 95355702 95355866 + 2 NA Intergenic Intergenic -292558 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 207-20 chr1 192253491 192253630 + 2 NA Intergenic L1M4b|LINE|L1 -63432 NM_001039152 431704 Hs.558673 NM_001039152 ENSG00000253148 RGS21 - regulator of G protein signaling 21 protein-coding 264-50 chr10 65247797 65247970 + 2 NA Intergenic L1MEh|LINE|L1 -323365 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 389-318 chr6 63153659 63153939 + 2 NA Intergenic L2a|LINE|L2 166178 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 400-209 chr3 28392963 28393197 + 2 NA intron (NM_001040432, intron 2 of 9) L1MA9|LINE|L1 43931 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 255-204 chr2 88024073 88024263 + 2 NA Intergenic L3|LINE|CR1 31615 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 347-564 chrX 93173960 93174219 + 2 NA Intergenic Intergenic -349186 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 461-225 chr5 156499520 156499868 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 172530 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 875-36 chr8 134198148 134198715 + 2 NA Intergenic Intergenic 311935 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 290-110 chr12 103111367 103111580 + 2 NA Intergenic Intergenic -40369 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 412-215 chr3 100612026 100612263 + 2 NA intron (NM_032787, intron 1 of 15) Charlie24|DNA|hAT-Charlie 2543 NM_032787 84873 Hs.334511 NM_032787 ENSG00000144820 ADGRG7 GPR128 adhesion G protein-coupled receptor G7 protein-coding 245-360 chr8 139599861 139600049 + 2 NA TTS (NR_104210) TTS (NR_104210) 103168 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 296-314 chr3 159022749 159022927 + 2 NA Intergenic L1PA16|LINE|L1 -46414 NM_001197113 100505385 Hs.134665 NM_001197113 ENSG00000283154 IQCJ-SCHIP1 - IQCJ-SCHIP1 readthrough protein-coding 289-450 chr7 145539713 145539944 + 2 NA Intergenic Intergenic -703775 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 179-4 chr10 36499726 36499865 + 2 NA Intergenic Intergenic -626062 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 591-167 chr8 119622109 119622579 + 2 NA intron (NM_001330600, intron 3 of 25) intron (NM_001330600, intron 3 of 25) 16495 NM_001040092 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 258-191 chr2 80919141 80919302 + 2 NA Intergenic L1MA2|LINE|L1 547725 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 204-109 chr16 8259615 8259788 + 2 NA Intergenic Intergenic 330137 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 511-21 chr10 66732782 66733144 + 2 NA intron (NM_001127384, intron 9 of 17) AluSx1|SINE|Alu -193073 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 176-69 chr20 53916271 53916417 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -40635 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 434-242 chr6 38633088 38633428 + 2 NA intron (NM_052893, intron 1 of 11) MIRb|SINE|MIR 6671 NM_001099272 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 112 chr1 45613977 45614041 + 2 NA intron (NM_002482, intron 7 of 14) intron (NM_002482, intron 7 of 14) 10045 NM_001114938 149483 Hs.18912 NM_152500 ENSG00000159588 CCDC17 - coiled-coil domain containing 17 protein-coding 357-231 chr2 225849686 225849932 + 2 NA Intergenic L2a|LINE|L2 -292985 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 415-308 chr9 121951510 121951771 + 2 NA intron (NM_001139442, intron 6 of 8) intron (NM_001139442, intron 6 of 8) 141966 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 350-506 chr8 36893479 36893654 + 2 NA intron (NM_001031836, intron 19 of 26) L1M4|LINE|L1 109192 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 281-301 chr3 172725717 172725975 + 2 NA Intergenic Intergenic -14779 NM_001146277 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 398-208 chr3 87880267 87880624 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) 87739 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 127-38 chr17 71150183 71150246 + 2 NA intron (NR_104152, intron 2 of 3) L1MB7|LINE|L1 51965 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 237-199 chr2 187614708 187614931 + 2 NA Intergenic Intergenic -60314 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 334-394 chr4 114713465 114713689 + 2 NA Intergenic Intergenic 56818 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 633-28 chr11 115796487 115797020 + 2 NA Intergenic MIRb|SINE|MIR -36553 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 321-526 chr7 48681238 48681525 + 2 NA Intergenic MIRb|SINE|MIR -243166 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 235-139 chr17 61451339 61451510 + 2 NA promoter-TSS (NM_001321120) promoter-TSS (NM_001321120) -998 NM_001321120 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 254-78 chr12 29922883 29923072 + 2 NA Intergenic L1MA10|LINE|L1 -138218 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 251-133 chr18 1679300 1679501 + 2 NA Intergenic Intergenic -319771 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 405-112 chr18 461907 462159 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 38668 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 292-24 chr1 160807514 160807773 + 2 NA intron (NM_002348, intron 2 of 9) L1PB4|LINE|L1 11469 NM_001033667 4063 Hs.403857 NM_002348 ENSG00000122224 LY9 CD229|SLAMF3|hly9|mLY9 lymphocyte antigen 9 protein-coding 247-288 chr4 31988071 31988297 + 2 NA Intergenic PABL_B-int|LTR|ERV1 -9195 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 357-203 chr2 73468450 73468730 + 2 NA intron (NM_015120, intron 9 of 22) L1MB3|LINE|L1 11487 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 479-238 chr8 50007860 50008304 + 2 NA intron (NR_135798, intron 1 of 15) THE1D|LTR|ERVL-MaLR 96675 NM_001321773 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 535-251 chr8 135951119 135951554 + 2 NA Intergenic MIRb|SINE|MIR 493880 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 298-459 chr8 77753604 77753813 + 2 NA Intergenic Intergenic 303011 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 236-277 chr5 12019263 12019432 + 2 NA Intergenic Intergenic -114901 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 341-77 chr11 13659391 13659599 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -9173 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 291-5 chr1 68028646 68028895 + 2 NA intron (NR_040077, intron 1 of 9) THE1C|LTR|ERVL-MaLR 22861 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 243-300 chr3 120572867 120573038 + 2 NA Intergenic Intergenic -23384 NM_001168331 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 468-17 chr1 209498433 209498895 + 2 NA Intergenic L1MA4|LINE|L1 66531 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 182-19 chr10 33236301 33236430 + 2 NA intron (NM_001244973, intron 6 of 16) intron (NM_001244973, intron 6 of 16) 98302 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 691-85 chr8 73625688 73626156 + 2 NA intron (NM_001164383, intron 1 of 9) intron (NM_001164383, intron 1 of 9) 120918 NM_001164380 27067 Hs.561815 NM_014393 ENSG00000040341 STAU2 39K2|39K3 staufen double-stranded RNA binding protein 2 protein-coding 362-164 chr14 101207734 101208070 + 2 NA Intergenic L1PA7|LINE|L1 87046 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 360-394 chr6 7787523 7787742 + 2 NA intron (NM_001718, intron 1 of 6) intron (NM_001718, intron 1 of 6) 61533 NM_001718 654 Hs.285671 NM_001718 ENSG00000153162 BMP6 VGR|VGR1 bone morphogenetic protein 6 protein-coding 404-47 chr10 80573559 80573958 + 2 NA intron (NM_207372, intron 3 of 6) L1ME3Cz|LINE|L1 32939 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 510-15 chr1 191981757 191982127 + 2 NA Intergenic L1MA4A|LINE|L1 -176520 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 474-153 chr2 188271272 188271604 + 2 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 16253 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 352-282 chr20 42170647 42170907 + 2 NA intron (NM_133170, intron 17 of 31) L1M6|LINE|L1 -514706 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 328-212 chr17 68631068 68631265 + 2 NA intron (NR_110825, intron 1 of 4) MLT1F|LTR|ERVL-MaLR 3012 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 337-366 chr3 121086699 121086996 + 2 NA intron (NR_145517, intron 5 of 8) Tigger3c|DNA|TcMar-Tigger 37207 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 356-297 chr21 24242054 24242367 + 2 NA Intergenic Intergenic 79167 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 418-241 chr6 97841645 97841951 + 2 NA Intergenic Intergenic -182733 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 248-425 chr9 28633403 28633628 + 2 NA intron (NM_152570, intron 2 of 6) intron (NM_152570, intron 2 of 6) 85790 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 164-101 chr6 95108741 95108858 + 2 NA Intergenic Intergenic 468652 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 368-6 chr1 42403583 42403943 + 2 NA intron (NM_173642, intron 2 of 4) MLT1E1A|LTR|ERVL-MaLR 22971 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 368-412 chr7 389860 390167 + 2 NA Intergenic L3|LINE|CR1 10588 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 491-141 chr2 241004162 241004498 + 2 NA intron (NM_001080437, intron 1 of 31) L1MEc|LINE|L1 5712 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 233-139 chr18 53320820 53321008 + 2 NA intron (NM_005215, intron 13 of 28) intron (NM_005215, intron 13 of 28) 83813 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 407-241 chr5 17465550 17465887 + 2 NA intron (NR_134270, intron 1 of 2) intron (NR_134270, intron 1 of 2) 21708 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 253-15 chr1 108329983 108330223 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -86022 NM_001143989 148545 Hs.511849 NM_152488 ENSG00000196427 NBPF4 - NBPF member 4 protein-coding 427-188 chr4 83355185 83355532 + 2 NA Intergenic LTR39|LTR|ERV1 -20205 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 309-110 chr12 58499656 58499939 + 2 NA Intergenic L2a|LINE|L2 -91905 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 279-87 chr12 130628005 130628190 + 2 NA intron (NM_001351226, intron 2 of 21) L2a|LINE|L2 359 NM_015347 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 401-6 chr1 90164436 90164815 + 2 NA Intergenic Intergenic 169515 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 518-284 chr7 110244411 110244784 + 2 NA Intergenic L1MEd|LINE|L1 -284384 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 402-28 chr10 15343103 15343399 + 2 NA intron (NM_001010924, intron 1 of 7) AluJr|SINE|Alu 28038 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 260-237 chr20 3504606 3504807 + 2 NA intron (NM_001323332, intron 1 of 25) (ATA)n|Simple_repeat|Simple_repeat 33688 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 228-375 chr9 107497648 107497814 + 2 NA Intergenic Intergenic -7962 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 555-179 chr6 137243499 137243995 + 2 NA Intergenic MIR|SINE|MIR -24317 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 391-145 chr18 33296816 33297056 + 2 NA intron (NM_001308126, intron 11 of 23) AluSx|SINE|Alu 143635 NM_001371121 267-118 chr14 97419762 97420010 + 2 NA Intergenic Intergenic -38930 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 336-363 chr3 55158090 55158368 + 2 NA Intergenic Intergenic -19943 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 353-141 chr14 60035697 60036041 + 2 NA intron (NR_075071, intron 29 of 32) L1MA4|LINE|L1 -56042 NM_022495 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 313-506 chr7 78980868 78981051 + 2 NA intron (NM_001301128, intron 2 of 20) L1MEd|LINE|L1 -28029 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 282-81 chr11 130750213 130750478 + 2 NA Intergenic L1M4a1|LINE|L1 77389 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 345-508 chr8 20699097 20699379 + 2 NA Intergenic Intergenic -84312 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 231-261 chr4 113347394 113347581 + 2 NA intron (NM_001354274, intron 34 of 42) intron (NM_001354274, intron 34 of 42) 54648 NM_001354281 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 379-246 chr4 100683735 100683943 + 2 NA Intergenic L1M4b|LINE|L1 -8726 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 219-350 chr8 33460564 33460713 + 2 NA intron (NM_032664, intron 2 of 4) intron (NM_032664, intron 2 of 4) 12508 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 271-18 chr1 171005049 171005203 + 2 NA intron (NM_001163629, intron 15 of 21) AluSz|SINE|Alu 69592 NM_025063 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 666-113 chr8 85090054 85090525 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -16949 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 484-52 chr12 120332184 120332496 + 2 NA Intergenic MIRb|SINE|MIR -4561 NM_000928 5319 Hs.992 NM_000928 ENSG00000170890 PLA2G1B PLA2|PLA2A|PPLA2 phospholipase A2 group IB protein-coding 669 chr1 34731875 34732386 + 2 NA Intergenic MIRb|SINE|MIR -22917 NM_005268 2709 Hs.198249 NM_005268 ENSG00000189280 GJB5 CX31.1 gap junction protein beta 5 protein-coding 654-85 chr4 12354736 12355209 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 131521 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 480-177 chr21 23920805 23921192 + 2 NA Intergenic L1PB4|LINE|L1 400379 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 536-30 chr10 30486250 30486689 + 2 NA Intergenic AluSx|SINE|Alu 51823 NM_001320961 1326 Hs.432453 NM_005204 ENSG00000107968 MAP3K8 AURA2|COT|EST|ESTF|MEKK8|TPL2|Tpl-2|c-COT mitogen-activated protein kinase kinase kinase 8 protein-coding 138-90 chr8 92659533 92659651 + 2 NA Intergenic Intergenic -4098 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 432-139 chr2 142960324 142960636 + 2 NA intron (NM_001199241, intron 8 of 14) intron (NM_001199241, intron 8 of 14) 82816 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 281-318 chr4 66358063 66358250 + 2 NA Intergenic L1MC4|LINE|L1 81332 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 315-475 chr8 69727772 69727958 + 2 NA intron (NM_001146009, intron 3 of 7) intron (NM_001146009, intron 3 of 7) 105304 NM_001146009 81796 Hs.152460 NM_030958 ENSG00000137571 SLCO5A1 OATP-J|OATP-RP4|OATP5A1|OATPJ|OATPRP4|SLC21A15 solute carrier organic anion transporter family member 5A1 protein-coding 430-120 chr18 7812140 7812475 + 2 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 244991 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 483-246 chr7 55135982 55136296 + 2 NA intron (NM_001346900, intron 1 of 27) intron (NM_001346900, intron 1 of 27) 26300 NM_001346900 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 243-39 chr10 43560373 43560562 + 2 NA intron (NM_001099283, intron 1 of 1) intron (NM_001099283, intron 1 of 1) 7992 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 398-212 chr3 104386981 104387345 + 2 NA Intergenic Intergenic -863047 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 327-287 chr2 225557773 225557993 + 2 NA intron (NM_001371273, intron 4 of 7) intron (NM_001371273, intron 4 of 7) 156997 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 283-411 chr7 38478768 38478996 + 2 NA intron (NM_001635, intron 5 of 20) L1MEf|LINE|L1 137305 NR_040085 100506776 Hs.173034 NR_040085 ENSG00000281103 TRG-AS1 TCRGV T cell receptor gamma locus antisense RNA 1 ncRNA 221-31 chr10 27888545 27888718 + 2 NA intron (NM_001290021, intron 10 of 13) L1M2|LINE|L1 93240 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 370-203 chr19 36603011 36603331 + 2 NA intron (NM_001145650, intron 1 of 4) intron (NM_001145650, intron 1 of 4) 2086 NM_001145649 57711 Hs.654960 NM_020951 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 342-290 chr20 54435190 54435408 + 2 NA Intergenic Intergenic -40294 NM_001294161 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 488-193 chr4 97228308 97228657 + 2 NA Intergenic Intergenic -138444 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 376-351 chr6 105650098 105650439 + 2 NA Intergenic AluSx3|SINE|Alu -247186 NM_002726 5550 Hs.436564 NM_002726 ENSG00000085377 PREP PE|PEP prolyl endopeptidase protein-coding 297-92 chr11 116299758 116299965 + 2 NA Intergenic Intergenic -339561 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 367-429 chr7 108362442 108362745 + 2 NA intron (NR_163871, intron 2 of 29) L1MC3|LINE|L1 -34067 NM_001371176 173-28 chr13 20846598 20846736 + 2 NA intron (NM_022459, intron 4 of 22) intron (NM_022459, intron 4 of 22) 56107 NM_022459 64328 Hs.507452 NM_022459 ENSG00000132953 XPO4 exp4 exportin 4 protein-coding 115-12 chr14 44964566 44964630 + 2 NA intron (NR_131765, intron 1 of 19) intron (NR_131765, intron 1 of 19) 2408 NM_015091 23116 Hs.371078 NM_015091 ENSG00000198718 TOGARAM1 FAM179B|KIAA0423 TOG array regulator of axonemal microtubules 1 protein-coding 299-239 chr2 183895010 183895229 + 2 NA Intergenic Intergenic -483856 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 287-108 chr12 29203120 29203348 + 2 NA intron (NM_001271783, intron 1 of 11) intron (NM_001271783, intron 1 of 11) -20432 NM_001271784 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 209-68 chr12 13748724 13748873 + 2 NA intron (NM_000834, intron 3 of 12) MER53|DNA|hAT 231558 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 583-119 chr4 23340940 23341316 + 2 NA Intergenic L1MC1|LINE|L1 540164 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 321-380 chr3 88491874 88492185 + 2 NA Intergenic Intergenic 153573 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 513-107 chr18 1061516 1061948 + 2 NA Intergenic L1MA9|LINE|L1 -133739 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 224-351 chr9 75578671 75578835 + 2 NA Intergenic Intergenic -311891 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 340-155 chr14 72409134 72409412 + 2 NA intron (NM_001370288, intron 3 of 16) MER57E1|LTR|ERV1 -107547 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 345-294 chr2 167240441 167240623 + 2 NA intron (NM_001199144, intron 4 of 8) intron (NM_001199144, intron 4 of 8) 53160 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 214-326 chr8 87034515 87034637 + 2 NA intron (NM_173538, intron 4 of 10) Tigger2|DNA|TcMar-Tigger 168161 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 287-20 chr1 116307230 116307477 + 2 NA Intergenic L2c|LINE|L2 -65891 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 381-302 chr5 24910484 24910694 + 2 NA Intergenic Intergenic -70006 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 251-269 chr4 66990245 66990411 + 2 NA Intergenic Intergenic 431672 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 348-283 chr3 2083124 2083310 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -15586 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 433-114 chr18 4667863 4668143 + 2 NA Intergenic L1PA15|LINE|L1 -212696 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 222-83 chr12 46603440 46603599 + 2 NA intron (NR_125377, intron 3 of 3) L1M2b|LINE|L1 219412 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 509-251 chr8 82500142 82500603 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -411732 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 362-51 chr10 28847161 28847464 + 2 NA intron (NM_001278522, intron 2 of 4) MER65B|LTR|ERV1 904 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 523-242 chr6 62553144 62553603 + 2 NA Intergenic L1PA13|LINE|L1 -267146 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 561-149 chr4 82107988 82108468 + 2 NA Intergenic Intergenic 265763 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 171-125 chr7 83541613 83541727 + 2 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 99761 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 314-305 chr2 137840251 137840516 + 2 NA Intergenic MIRb|SINE|MIR 87549 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 281-284 chr3 40935847 40936057 + 2 NA Intergenic MamRep1151|LTR?|LTR? -263553 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 425-254 chr6 21706341 21706710 + 2 NA intron (NR_015410, intron 2 of 11) intron (NR_015410, intron 2 of 11) 40112 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 460-127 chr19 36896945 36897344 + 2 NA intron (NM_001037232, intron 5 of 5) L1M2|LINE|L1 18895 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 205-169 chr21 27472409 27472585 + 2 NA Intergenic LTR16E2|LTR|ERVL -249882 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 631-126 chr8 129447306 129447780 + 2 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 36599 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 368-175 chr16 48649214 48649516 + 2 NA Intergenic L1MA5A|LINE|L1 -39185 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 489-239 chr7 48540730 48541012 + 2 NA intron (NM_152701, intron 55 of 61) (ATT)n|Simple_repeat|Simple_repeat 369413 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 341-410 chr4 173557540 173557828 + 2 NA intron (NR_136195, intron 3 of 4) intron (NR_136195, intron 3 of 4) 27226 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 198-38 chr11 31552232 31552378 + 2 NA intron (NM_001288725, intron 3 of 10) L2a|LINE|L2 42538 NM_001288725 26610 Hs.175534 NM_019040 ENSG00000109911 ELP4 AN|AN2|C11orf19|PAX6NEB|PAXNEB|dJ68P15A.1|hELP4 elongator acetyltransferase complex subunit 4 protein-coding 262-56 chr10 82386286 82386460 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -153453 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 579-137 chr6 20983340 20983845 + 2 NA intron (NM_017774, intron 10 of 15) AluSx|SINE|Alu 449135 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 332-564 chr9 30582479 30582731 + 2 NA Intergenic L1MCc|LINE|L1 -174151 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 248-50 chr10 96461612 96461847 + 2 NA intron (NM_012465, intron 2 of 20) intron (NM_012465, intron 2 of 20) 52197 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 219-139 chr18 4491496 4491646 + 2 NA Intergenic Intergenic -36264 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 238-275 chr4 117003154 117003386 + 2 NA Intergenic Intergenic 82306 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 222-27 chr10 1816710 1816913 + 2 NA Intergenic L1M4|LINE|L1 -79286 NM_018702 105 Hs.586663 NM_018702 ENSG00000185736 ADARB2 ADAR3|RED2 adenosine deaminase RNA specific B2 (inactive) protein-coding 575-101 chr20 23195748 23196125 + 2 NA Intergenic L1PA16|LINE|L1 -63300 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 242-353 chr6 151778238 151778435 + 2 NA intron (NM_001122742, intron 2 of 9) L1MB4|LINE|L1 -27337 NM_001291230 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 331-414 chr5 33187559 33187819 + 2 NA Intergenic L1M4b|LINE|L1 -42046 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 307-535 chrX 96443745 96444045 + 2 NA Intergenic Intergenic -105993 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 356-219 chr19 41683851 41684126 + 2 NA exon (NM_001291485, exon 3 of 5) exon (NM_001291485, exon 3 of 5) 4282 NM_006890 1087 Hs.74466 NM_006890 ENSG00000007306 CEACAM7 CGM2 carcinoembryonic antigen related cell adhesion molecule 7 protein-coding 661-35 chr17 3209413 3209943 + 2 NA Intergenic AluJr|SINE|Alu -5943 NM_014565 8383 Hs.532688 NM_014565 ENSG00000172146 OR1A1 OR17-7 olfactory receptor family 1 subfamily A member 1 protein-coding 716-34 chr2 77583803 77584328 + 2 NA Intergenic Intergenic -61632 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 231-333 chr7 62967215 62967365 + 2 NA Intergenic ALR/Alpha|Satellite|centr 336766 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 230-179 chr2 119382485 119382680 + 2 NA Intergenic Intergenic 14907 NM_001079863 1622 Hs.78888 NM_020548 ENSG00000155368 DBI ACBD1|ACBP|CCK-RP|EP diazepam binding inhibitor, acyl-CoA binding protein protein-coding 471-30 chr10 71933575 71933952 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -30632 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 365-291 chr4 67276635 67276947 + 2 NA Intergenic HERV9NC-int|LTR|ERV1 145209 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 345-329 chr21 31418818 31419076 + 2 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -74593 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 313-320 chr22 32712763 32712963 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -87953 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 469-234 chr5 162877405 162877639 + 2 NA Intergenic LOR1-int|LTR|ERV1 -560049 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 320-548 chr8 81653942 81654248 + 2 NA Intergenic L1M5|LINE|L1 -22818 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 712-77 chr5 93286664 93287070 + 2 NA Intergenic L1MCc|LINE|L1 284476 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 202-4 chr1 79755306 79755463 + 2 NA Intergenic L2a|LINE|L2 -748654 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 371-212 chr20 13838427 13838665 + 2 NA Intergenic Intergenic 53518 NR_147978 79133 Hs.472165 NM_024120 ENSG00000101247 NDUFAF5 C20orf7|MC1DN16|bA526K24.2|dJ842G6.1 NADH:ubiquinone oxidoreductase complex assembly factor 5 protein-coding 367-52 chr10 62121030 62121324 + 2 NA Intergenic L1MA5|LINE|L1 71820 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 250-38 chr10 44721646 44721844 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -189571 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 351-323 chr3 187788687 187788989 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -43370 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 244-160 chr2 68038831 68039071 + 2 NA Intergenic Intergenic 24053 NM_006333 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 279-436 chr9 28400150 28400307 + 2 NA intron (NM_152570, intron 3 of 6) MIRc|SINE|MIR 319077 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 210-251 chr6 114145200 114145384 + 2 NA intron (NR_125845, intron 6 of 9) intron (NR_125845, intron 6 of 9) -82415 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 383-96 chr13 55311183 55311488 + 2 NA Intergenic Intergenic 136881 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 226-374 chr9 26534003 26534171 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 358715 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 149-27 chr13 61459210 61459319 + 2 NA Intergenic HAL1ME|LINE|L1 -31318 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 449-43 chr11 40823205 40823535 + 2 NA intron (NM_020929, intron 1 of 4) L1ME3|LINE|L1 -530240 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 647-31 chr15 38664806 38665357 + 2 NA Intergenic Intergenic -31517 NR_160786 192-187 chr7 19607098 19607217 + 2 NA Intergenic L1MB3|LINE|L1 98279 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 351-456 chr7 68007724 68007942 + 2 NA Intergenic MER34A1|LTR|ERV1 -12420 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 185-205 chr8 128978455 128978605 + 2 NA Intergenic L2b|LINE|L2 -12529 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 649-91 chr5 137453522 137454091 + 2 NA intron (NM_004598, intron 2 of 10) intron (NM_004598, intron 2 of 10) 45520 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 249-192 chr2 59053480 59053610 + 2 NA intron (NR_033873, intron 12 of 13) intron (NR_033873, intron 12 of 13) -164163 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 390-83 chr13 61367635 61367961 + 2 NA Intergenic L1PA7|LINE|L1 47724 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 263-22 chr1 171925762 171925927 + 2 NA intron (NM_001278252, intron 2 of 14) L1PA17|LINE|L1 61652 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 290-327 chr5 3816607 3816882 + 2 NA Intergenic (TATAAT)n|Simple_repeat|Simple_repeat 220912 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 132-26 chr14 59146042 59146167 + 2 NA Intergenic Intergenic -42563 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 456-265 chr5 167621029 167621374 + 2 NA intron (NM_001368145, intron 1 of 26) L2a|LINE|L2 47542 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 366-58 chr10 88853203 88853491 + 2 NA Intergenic Intergenic -1503 NM_144590 118932 Hs.217484 NM_144590 ENSG00000152766 ANKRD22 - ankyrin repeat domain 22 protein-coding 294-315 chr3 176195937 176196124 + 2 NA Intergenic Intergenic -48521 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 480-290 chr8 73214566 73214871 + 2 NA Intergenic Intergenic 44784 NM_001243237 100130301 Hs.202296 NM_001243237 ENSG00000274443 C8orf89 - chromosome 8 open reading frame 89 protein-coding 495-121 chr2 173284029 173284419 + 2 NA Intergenic Intergenic -2188 NR_033882 339751 Hs.570083 NR_033882 ENSG00000238133 MAP3K20-AS1 MLK7-AS1 MAP3K20 antisense RNA 1 ncRNA 353-350 chr4 7885680 7885964 + 2 NA intron (NM_198595, intron 1 of 16) intron (NM_198595, intron 1 of 16) -13514 NM_001371090 368-87 chr11 98788477 98788776 + 2 NA Intergenic L1PA16|LINE|L1 -232323 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 432-74 chr13 46234968 46235245 + 2 NA intron (NM_001282460, intron 5 of 9) L1M4|LINE|L1 23178 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 462-11 chr1 110929794 110930100 + 2 NA Intergenic L1PREC2|LINE|L1 33975 NM_018372 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 275-207 chr2 154450746 154450984 + 2 NA 3' UTR (NM_001301627, exon 12 of 12) 3' UTR (NM_001301627, exon 12 of 12) 6573 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 519-215 chr7 104357191 104357624 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 28751 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 326-309 chr21 30654057 30654230 + 2 NA Intergenic Intergenic 11279 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 251-30 chr10 39154399 39154571 + 2 NA Intergenic ALR/Alpha|Satellite|centr 457889 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 351-153 chr16 3294522 3294844 + 2 NA Intergenic Intergenic -10723 NM_153028 7627 Hs.513292 NM_153028 ENSG00000162086 ZNF75A - zinc finger protein 75a protein-coding 521-145 chr21 18236437 18236825 + 2 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -8202 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 296-321 chr3 190343019 190343272 + 2 NA Intergenic L1MA9|LINE|L1 -20699 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 228 chr1 24192834 24192985 + 2 NA Intergenic Intergenic -5620 NM_173064 163702 Hs.221375 NM_170743 ENSG00000185436 IFNLR1 CRF2/12|IFNLR|IL-28R1|IL28RA|LICR2 interferon lambda receptor 1 protein-coding 263-145 chr16 78492525 78492686 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 392951 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 536-53 chr11 93402979 93403454 + 2 NA intron (NM_181645, intron 11 of 13) L1M2|LINE|L1 72499 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 328-78 chr11 28598067 28598287 + 2 NA Intergenic Intergenic -120629 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 112-4 chr10 31162737 31162804 + 2 NA Intergenic L1MA9|LINE|L1 -25113 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 257-69 chr11 94086882 94087071 + 2 NA intron (NM_001098672, intron 11 of 19) intron (NM_001098672, intron 11 of 19) -41865 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 282-346 chr4 90778081 90778322 + 2 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 543170 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 456-89 chr14 59728610 59728944 + 2 NA intron (NM_021136, intron 2 of 8) intron (NM_021136, intron 2 of 8) -81757 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 737-85 chr8 88694990 88695608 + 2 NA Intergenic L1M3f|LINE|L1 -367816 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 285-127 chr14 86808950 86809224 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -96691 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 133-26 chr15 95013114 95013194 + 2 NA Intergenic Intergenic 157791 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 471-114 chr18 74730228 74730606 + 2 NA intron (NM_001146190, intron 2 of 3) intron (NM_001146190, intron 2 of 3) 99454 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 298-19 chr1 176098395 176098553 + 2 NA intron (NM_022457, intron 9 of 19) MER61-int|LTR|ERV1 108770 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 226-275 chr5 27908466 27908673 + 2 NA Intergenic Intergenic 379096 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 304-514 chr8 80809858 80810030 + 2 NA intron (NM_001033723, intron 2 of 8) intron (NM_001033723, intron 2 of 8) 64524 NM_001367783 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 141-60 chr3 172715232 172715358 + 2 NA Intergenic Intergenic -4228 NM_001146277 57552 Hs.444099 NM_020792 ENSG00000144959 NCEH1 AADACL1|NCEH neutral cholesterol ester hydrolase 1 protein-coding 292-137 chr14 51949379 51949657 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -30947 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 360-118 chr14 54308650 54308989 + 2 NA Intergenic Intergenic -88049 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 421-232 chr5 40715736 40716084 + 2 NA 3' UTR (NM_012382, exon 5 of 5) 3' UTR (NM_012382, exon 5 of 5) 35995 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 302-197 chr2 17799893 17800116 + 2 NA Intergenic Intergenic -16456 NM_001105569 343930 NM_001105569 ENSG00000151379 MSGN1 MSOG|pMsgn1 mesogenin 1 protein-coding 371-275 chr4 59044881 59045178 + 2 NA intron (NR_133941, intron 2 of 2) MIR1_Amn|SINE|MIR 31456 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 311-137 chr14 60883390 60883557 + 2 NA intron (NM_001177963, intron 6 of 6) L1MA2|LINE|L1 97606 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 363-283 chr3 59340743 59341053 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -290866 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 421-80 chr14 50691035 50691322 + 2 NA Intergenic AluJr|SINE|Alu -22872 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 242-59 chr11 88500924 88501093 + 2 NA Intergenic Intergenic -3568 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 165-20 chr11 115825194 115825355 + 2 NA Intergenic L1MEd|LINE|L1 -65074 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 449-212 chr5 90231710 90232081 + 2 NA intron (NR_120601, intron 3 of 5) intron (NR_120601, intron 3 of 5) 58176 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 248-417 chr8 136970666 136970906 + 2 NA Intergenic Intergenic 439988 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 370-129 chr13 62821371 62821659 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -14156 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 241-18 chr1 147421275 147421459 + 2 NA intron (NR_038423, intron 3 of 3) L1MB8|LINE|L1 96508 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 339-497 chr6 87001674 87001927 + 2 NA intron (NM_000865, intron 1 of 1) LOR1b|LTR|ERV1 64272 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 360-192 chr19 37443044 37443224 + 2 NA intron (NM_152484, intron 3 of 5) AluSx|SINE|Alu 24310 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 525-92 chr17 70276297 70276628 + 2 NA Intergenic L1PB3|LINE|L1 106927 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 191-66 chr16 50722292 50722419 + 2 NA intron (NR_163434, intron 8 of 12) intron (NR_163434, intron 8 of 12) -19695 NM_015247 1540 Hs.578973 NM_015247 ENSG00000083799 CYLD BRSS|CDMT|CYLD1|CYLDI|EAC|MFT|MFT1|SBS|TEM|USPL2 CYLD lysine 63 deubiquitinase protein-coding 511-191 chr4 46727241 46727642 + 2 NA Intergenic L1P2|LINE|L1 181804 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 240-78 chr11 44420572 44420773 + 2 NA Intergenic MIR|SINE|MIR -110533 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 361-57 chr10 107457494 107457721 + 2 NA Intergenic Intergenic -292901 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 353-193 chr17 71266368 71266582 + 2 NA Intergenic L2a|LINE|L2 -64296 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 221-82 chr14 57175334 57175479 + 2 NA Intergenic Intergenic 93499 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 551-158 chr5 85132524 85132904 + 2 NA Intergenic Intergenic -747834 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 482-15 chr1 147783219 147783676 + 2 NA Intergenic Intergenic -10085 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 280-406 chr8 77987100 77987353 + 2 NA Intergenic Intergenic -529114 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 242-182 chr2 67805425 67805650 + 2 NA intron (NR_110271, intron 2 of 2) L1ME3B|LINE|L1 20025 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 654-48 chr17 65014723 65015126 + 2 NA intron (NM_006572, intron 3 of 3) intron (NM_006572, intron 3 of 3) -39339 NR_026903 201283 Hs.396447 NM_153032 ENSG00000214174 AMZ2P1 - archaelysin family metallopeptidase 2 pseudogene 1 pseudo 332-580 chrUn_GL000216v2 167547 167738 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 406-236 chr5 113627827 113628122 + 2 NA Intergenic L1M3c|LINE|L1 114280 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 568-74 chr16 48494713 48495101 + 2 NA Intergenic HAL1ME|LINE|L1 -109494 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 313-55 chr10 90071896 90072095 + 2 NA Intergenic L1MA3|LINE|L1 -114622 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 436-315 chr8 128205030 128205359 + 2 NA Intergenic LTR16B|LTR|ERVL 55078 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 298-325 chr4 59191641 59191896 + 2 NA Intergenic Intergenic 178195 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 285-327 chr5 18615416 18615616 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 808242 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 207-180 chr3 2143856 2144034 + 2 NA intron (NR_046555, intron 1 of 2) intron (NR_046555, intron 1 of 2) 296 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 206-78 chr15 70920551 70920714 + 2 NA intron (NM_017691, intron 7 of 15) intron (NM_017691, intron 7 of 15) 28189 NM_001199017 54839 Hs.12692 NM_017691 ENSG00000137821 LRRC49 PGs4 leucine rich repeat containing 49 protein-coding 238-205 chr20 43858691 43858893 + 2 NA Intergenic AluJb|SINE|Alu -35926 NR_134577 105372626 Hs.130555 NR_134577 ENSG00000233277 LINC01728 - long intergenic non-protein coding RNA 1728 ncRNA 123-19 chr14 54120110 54120191 + 2 NA Intergenic Intergenic -163259 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 348-44 chr10 5172274 5172517 + 2 NA intron (NR_027916, intron 1 of 7) LTR19-int|LTR|ERV1 12792 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 331-483 chr7 20522609 20522863 + 2 NA Intergenic Intergenic -92931 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 294-452 chr8 24394897 24395132 + 2 NA intron (NM_014479, intron 4 of 13) MamTip2|DNA|hAT-Tip100 10729 NM_001145272 27299 Hs.521459 NM_014479 ENSG00000134028 ADAMDEC1 M12.219 ADAM like decysin 1 protein-coding 239-25 chr10 19294317 19294513 + 2 NA intron (NM_001142308, intron 21 of 39) intron (NM_001142308, intron 21 of 39) 245614 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 570-146 chr4 63390499 63391047 + 2 NA Intergenic Intergenic 1018677 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 502-74 chr13 43189852 43190252 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 76887 NR_047013 100874159 Hs.633241 NR_047013 LINC00400 - long intergenic non-protein coding RNA 400 ncRNA 432-299 chr9 92013984 92014327 + 2 NA Intergenic L1ME3C|LINE|L1 -63927 NM_001318204 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 398-61 chr11 97576981 97577290 + 2 NA Intergenic Intergenic 1068710 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 332-192 chr16 89992162 89992374 + 2 NA intron (NR_003228, intron 8 of 12) MER68|LTR|ERVL 17853 NM_024043 79007 Hs.301394 NM_024043 ENSG00000003249 DBNDD1 - dysbindin domain containing 1 protein-coding 347-206 chr2 43253350 43253681 + 2 NA intron (NM_001083953, intron 36 of 37) L2-1_Crp|LINE|L2 26304 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 194-148 chr4 87232351 87232514 + 2 NA Intergenic L1ME3E|LINE|L1 -11814 NR_120447 57563 Hs.106601 NM_020803 ENSG00000145332 KLHL8 - kelch like family member 8 protein-coding 478-76 chr14 49191401 49191769 + 2 NA Intergenic Intergenic 394795 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 312-11 chr1 63514206 63514491 + 2 NA intron (NM_001206739, intron 1 of 9) L1ME2z|LINE|L1 8925 NM_014288 23421 Hs.166539 NM_014288 ENSG00000142856 ITGB3BP CENP-R|CENPR|HSU37139|NRIF3|TAP20 integrin subunit beta 3 binding protein protein-coding 228-105 chr14 88966317 88966464 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 141739 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 426-21 chr10 12526552 12526833 + 2 NA intron (NM_001351032, intron 3 of 11) AluJb|SINE|Alu -52061 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 477-137 chr2 14387242 14387654 + 2 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 13510 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 232-86 chr13 57196890 57197087 + 2 NA Intergenic L1MA3|LINE|L1 29791 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 383-40 chr10 115539321 115539584 + 2 NA intron (NM_207303, intron 25 of 28) L1ME3A|LINE|L1 446087 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 133-24 chr15 80364263 80364388 + 2 NA Intergenic Intergenic -22520 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 184-173 chr8 101039258 101039404 + 2 NA Intergenic MIR|SINE|MIR -12723 NR_033962 441374 Hs.652045 NR_033962 ENSG00000248599 FLJ42969 - uncharacterized LOC441374 ncRNA 453-269 chr8 684161 684495 + 2 NA intron (NR_156467, intron 3 of 5) intron (NR_156467, intron 3 of 5) 46896 NM_207332 157697 Hs.655310 NM_207332 ENSG00000104714 ERICH1 HSPC319 glutamate rich 1 protein-coding 314-181 chr15 27848613 27848842 + 2 NA intron (NM_001300984, intron 21 of 22) intron (NM_001300984, intron 21 of 22) 250588 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 279-391 chr7 46886477 46886683 + 2 NA Intergenic Intergenic -189458 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 360-36 chr10 52820924 52821253 + 2 NA Intergenic Intergenic -49388 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 223-262 chr4 171100266 171100425 + 2 NA Intergenic Intergenic 59743 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 358-304 chr3 104638227 104638510 + 2 NA Intergenic L1MA1|LINE|L1 -728345 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 288-8 chr1 42566800 42567083 + 2 NA intron (NM_001080850, intron 7 of 16) intron (NM_001080850, intron 7 of 16) 33921 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 310-531 chr8 117773086 117773273 + 2 NA Intergenic Intergenic 147734 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 270-87 chr12 52704454 52704658 + 2 NA Intergenic Intergenic -1032 NM_175078 374454 Hs.334989 NM_175078 ENSG00000189182 KRT77 K1B|KRT1B keratin 77 protein-coding 241-330 chr6 61502534 61502759 + 2 NA Intergenic ALR/Alpha|Satellite|centr -71484 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 311-204 chr17_KI270730v1_random 88378 88539 + 2 NA NA AluYj4|SINE|Alu NA NA 305-202 chr17 72272559 72272804 + 2 NA Intergenic Intergenic -70130 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 217-235 chr3 122076799 122077014 + 2 NA promoter-TSS (NM_176892) promoter-TSS (NM_176892) -943 NM_176892 942 Hs.171182 NM_006889 ENSG00000114013 CD86 B7-2|B7.2|B70|CD28LG2|LAB72 CD86 molecule protein-coding 239-99 chr14 50523521 50523686 + 2 NA intron (NM_198794, intron 2 of 31) L2a|LINE|L2 8966 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 320-20 chr1 106262134 106262325 + 2 NA Intergenic L1PB4|LINE|L1 -233976 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 441-122 chr2 36192087 36192413 + 2 NA Intergenic Intergenic 163320 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 331-507 chr7 71000537 71000791 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -131480 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 395-251 chr4 67290224 67290493 + 2 NA Intergenic Intergenic 131642 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 331-356 chr3 87926610 87926844 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -55849 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 369-304 chr4 136750581 136750917 + 2 NA Intergenic MER44D|DNA|TcMar-Tigger -443007 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 391-63 chr11 84441461 84441757 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -124270 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 342-372 chr4 130362436 130362727 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -13780 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 142-9 chr11 56431839 56431929 + 2 NA Intergenic Intergenic -13652 NM_001004744 219479 Hs.553630 NM_001004744 ENSG00000279961 OR5R1 OR11-185|OR5R1P olfactory receptor family 5 subfamily R member 1 (gene/pseudogene) protein-coding 450-173 chr21 20691090 20691369 + 2 NA Intergenic MLT2D|LTR|ERVL 111879 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 366-109 chr12 78936779 78937109 + 2 NA intron (NM_001291901, intron 1 of 9) MER67C|LTR|ERV1 72170 NM_005639 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 359-348 chr4 13276281 13276499 + 2 NA Intergenic Intergenic 207950 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 709-85 chr7 70229602 70230137 + 2 NA intron (NM_015570, intron 4 of 18) L1M4a2|LINE|L1 631394 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 616-25 chr11 57826349 57826784 + 2 NA Intergenic AluSx|SINE|Alu 64764 NM_001206884 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 157-125 chr7 106384335 106384478 + 2 NA Intergenic Intergenic -99423 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 518-150 chr2 179001205 179001682 + 2 NA intron (NM_001316745, intron 2 of 11) intron (NM_001316745, intron 2 of 11) 48694 NM_173648 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 320-100 chr11 111068278 111068459 + 2 NA Intergenic L1MA9|LINE|L1 28950 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 323-348 chr3 158334476 158334680 + 2 NA intron (NM_001271838, intron 5 of 9) AluSc5|SINE|Alu -192130 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 489-66 chr13 71443053 71443426 + 2 NA intron (NM_080759, intron 10 of 10) intron (NM_080759, intron 10 of 10) 423953 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 320-108 chr11 133586348 133586558 + 2 NA Intergenic Intergenic -53952 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 475-117 chr18 78220547 78220889 + 2 NA Intergenic Intergenic -226991 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 651-9 chr1 197512096 197512538 + 2 NA intron (NR_125340, intron 18 of 19) intron (NR_125340, intron 18 of 19) 244065 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 411-16 chr1 210892770 210893111 + 2 NA intron (NM_002238, intron 7 of 10) L2c|LINE|L2 240434 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 394-63 chr11 84352772 84353011 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -35552 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 243-2 chr1 11208678 11208869 + 2 NA intron (NM_004958, intron 25 of 57) intron (NM_004958, intron 25 of 57) 19418 NM_021146 10218 Hs.146559 NM_021146 ENSG00000171819 ANGPTL7 AngX|CDT6|dJ647M16.1 angiopoietin like 7 protein-coding 561-190 chr7 95881104 95881522 + 2 NA intron (NM_004411, intron 6 of 16) intron (NM_004411, intron 6 of 16) 108807 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 285-394 chr8 10110528 10110682 + 2 NA intron (NM_001199729, intron 2 of 6) intron (NM_001199729, intron 2 of 6) 14954 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 400-154 chr2 36571117 36571495 + 2 NA intron (NM_001042548, intron 5 of 8) intron (NM_001042548, intron 5 of 8) 26862 NM_001042548 9637 Hs.258563 NM_005102 ENSG00000171055 FEZ2 HUM3CL fasciculation and elongation protein zeta 2 protein-coding 125-11 chr12 21893155 21893231 + 2 NA intron (NM_005691, intron 12 of 37) intron (NM_005691, intron 12 of 37) 43501 NM_020297 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 239-160 chr2 7789466 7789647 + 2 NA Intergenic Intergenic 110099 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 337-108 chr12 17267940 17268142 + 2 NA Intergenic L1M6|LINE|L1 279294 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 370-312 chr3 88810711 88810975 + 2 NA Intergenic Intergenic -296778 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 195-126 chr20 42781836 42781976 + 2 NA intron (NM_133170, intron 3 of 31) MIR|SINE|MIR 96423 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 393-37 chr10 33879051 33879274 + 2 NA Intergenic Intergenic -106482 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 388-281 chr5 73999996 74000375 + 2 NA Intergenic MIR3|SINE|MIR 186639 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 291-353 chr5 65804285 65804446 + 2 NA intron (NM_020726, intron 9 of 12) Tigger1|DNA|TcMar-Tigger 82160 NM_020726 57486 Hs.247460 NM_020726 ENSG00000123213 NLN AGTBP|EP24.16|MEP|MOP neurolysin protein-coding 531-271 chrX 16108049 16108428 + 2 NA Intergenic Intergenic -15327 NM_005314 2925 Hs.567282 NM_005314 ENSG00000126010 GRPR BB2|BB2R gastrin releasing peptide receptor protein-coding 334-521 chr8 49394315 49394508 + 2 NA Intergenic Intergenic 117769 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 591-104 chr4 12198842 12199244 + 2 NA Intergenic LTR16C|LTR|ERVL -24408 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 528-145 chr20 39917134 39917532 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -87128 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 286-28 chr1 236320749 236321001 + 2 NA Intergenic Intergenic -38917 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 233-221 chr3 2362761 2362980 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 124041 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 394-313 chr7 123252637 123252862 + 2 NA Intergenic Intergenic -52778 NM_001324400 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 270-107 chr14 46340946 46341116 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -130328 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 352-538 chr8 102093930 102094260 + 2 NA intron (NM_001040624, intron 1 of 7) intron (NM_001040624, intron 1 of 7) 30239 NM_001040629 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 333-563 chr8 60407114 60407309 + 2 NA intron (NR_103854, intron 2 of 2) intron (NR_103854, intron 2 of 2) 6607 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 524-171 chr4 46497709 46498106 + 2 NA Intergenic L1ME2|LINE|L1 -107779 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 331-558 chr9 87273358 87273543 + 2 NA Intergenic L1MB3|LINE|L1 124806 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 338-336 chr3 68211595 68211911 + 2 NA intron (NM_001252216, intron 2 of 4) MSTB1|LTR|ERVL-MaLR 207506 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 288-304 chr4 95440649 95440846 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 108226 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 571-40 chr12 107530044 107530440 + 2 NA intron (NM_001018072, intron 2 of 16) intron (NM_001018072, intron 2 of 16) -50632 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 251-125 chr16 79777958 79778110 + 2 NA intron (NR_104660, intron 1 of 3) L1MC3|LINE|L1 -7502 NR_104663 102467146 Hs.657587 NR_104663 ENSG00000261390 MAFTRR linc-MAF-4|lincMAF4 MAF transcriptional regulator RNA ncRNA 231-60 chr11 105028992 105029161 + 2 NA intron (NM_033295, intron 2 of 4) intron (NM_033295, intron 2 of 4) -5908 NR_024239 838 Hs.213327 NM_004347 ENSG00000137757 CASP5 ICE(rel)III|ICEREL-III|ICH-3 caspase 5 protein-coding 385-384 chr8 117103306 117103510 + 2 NA intron (NM_001172815, intron 2 of 10) MLT1C-int|LTR|ERVL-MaLR -31587 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 347-145 chr15 27645470 27645773 + 2 NA Intergenic Intergenic 453694 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 378-71 chr10 121258523 121258736 + 2 NA Intergenic Intergenic 272685 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 291-125 chr14 62732686 62732883 + 2 NA intron (NM_172375, intron 9 of 9) LTR33|LTR|ERVL 312674 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 387-123 chr15 92481549 92481766 + 2 NA intron (NR_161371, intron 2 of 2) intron (NR_161371, intron 2 of 2) 9980 NR_161371 145858 Hs.367879 NM_153040 C15orf32 - chromosome 15 open reading frame 32 ncRNA 406-308 chr9 1911253 1911477 + 2 NA Intergenic MIRb|SINE|MIR -103982 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 304-479 chr7 8333888 8334174 + 2 NA intron (NR_125740, intron 3 of 5) intron (NR_125740, intron 3 of 5) -71419 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 275-21 chr1 192566454 192566671 + 2 NA Intergenic Intergenic -9211 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 497-112 chr2 17052340 17052804 + 2 NA Intergenic Intergenic -386738 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 655-97 chr5 88073220 88073681 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 195395 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 387-159 chr2 18275744 18276067 + 2 NA Intergenic L1MDa|LINE|L1 284748 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 367-447 chr8 68492463 68492760 + 2 NA intron (NR_146187, intron 4 of 13) intron (NR_146187, intron 4 of 13) -161120 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 205-5 chr1 18051469 18051669 + 2 NA Intergenic Intergenic -14088 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 323-557 chr8 115730778 115731065 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -61946 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 185-31 chr10 106911286 106911431 + 2 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 253348 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 442-120 chr2 16839997 16840238 + 2 NA Intergenic AluJb|SINE|Alu -174283 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 361-313 chr4 30319318 30319541 + 2 NA Intergenic Intergenic -400940 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 290-304 chr4 14708799 14709065 + 2 NA intron (NR_126435, intron 2 of 6) intron (NR_126435, intron 2 of 6) 179237 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 516-37 chr11 97237016 97237517 + 2 NA Intergenic Intergenic 728841 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 169-148 chr9 35271516 35271622 + 2 NA intron (NM_006377, intron 7 of 38) intron (NM_006377, intron 7 of 38) -70327 NM_001371188 268-435 chr9 40922711 40922902 + 2 NA Intergenic CER|Satellite|Satellite 6286 NR_031629 100302167 NR_031629 ENSG00000275377 MIR1299 MIRN1299|hsa-mir-1299 microRNA 1299 ncRNA 197-36 chr11 20818772 20818940 + 2 NA intron (NM_001288714, intron 3 of 18) intron (NM_001288714, intron 3 of 18) 149270 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 352-485 chr7 20965018 20965329 + 2 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 129742 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 433-13 chr1 211617303 211617668 + 2 NA Intergenic AluJr4|SINE|Alu -22323 NR_131925 105748977 Hs.553186 NR_131925 LINC01693 - long intergenic non-protein coding RNA 1693 ncRNA 340-237 chr2 18065738 18065994 + 2 NA Intergenic Intergenic 187199 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 199-114 chr2 70816101 70816270 + 2 NA exon (NM_001258027, exon 4 of 7) exon (NM_001258027, exon 4 of 7) 4414 NM_001258027 165530 Hs.681239 NM_173535 ENSG00000152672 CLEC4F CLECSF13|KCLR C-type lectin domain family 4 member F protein-coding 219-357 chr8 83593450 83593617 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 189775 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 262-463 chrX 43078413 43078549 + 2 NA Intergenic L1MA4|LINE|L1 -98513 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 433-202 chr4 59996835 59997098 + 2 NA Intergenic MER41-int|LTR|ERV1 -925653 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 305-54 chr10 20136486 20136751 + 2 NA intron (NM_032812, intron 4 of 13) intron (NM_032812, intron 4 of 13) 320186 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 229-311 chr5 97149976 97150150 + 2 NA Intergenic Intergenic -7452 NM_153234 167410 Hs.656702 NM_153234 ENSG00000145721 LIX1 C5orf11|Lft limb and CNS expressed 1 protein-coding 461-39 chr10 89680699 89681119 + 2 NA Intergenic L1MB2|LINE|L1 17019 NR_026835 283011 Hs.679445 NR_026835 FLJ37201 - tigger transposable element derived 2 pseudogene pseudo 350-237 chr2 115731866 115732102 + 2 NA intron (NM_001321912, intron 9 of 25) intron (NM_001321912, intron 9 of 25) 388169 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 461-136 chr2 102015735 102016073 + 2 NA exon (NM_001261419, exon 4 of 7) exon (NM_001261419, exon 4 of 7) 16943 NR_048564 7850 Hs.25333 NM_004633 ENSG00000115590 IL1R2 CD121b|CDw121b|IL-1R-2|IL-1RT-2|IL-1RT2|IL1R2c|IL1RB interleukin 1 receptor type 2 protein-coding 211-260 chr6 77214285 77214464 + 2 NA Intergenic Intergenic 249648 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 163-91 chr3 190181579 190181700 + 2 NA Intergenic HAL1M8|LINE|L1 -59202 NM_001134418 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 296-219 chr2 52172421 52172624 + 2 NA intron (NR_135237, intron 7 of 10) THE1B|LTR|ERVL-MaLR -198126 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 193-34 chr11 22005381 22005529 + 2 NA Intergenic L2a|LINE|L2 -187630 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 323-50 chr10 37237869 37238097 + 2 NA Intergenic Intergenic -71203 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 222-352 chr7 97276187 97276407 + 2 NA Intergenic Intergenic 159704 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 285-331 chr5 31178797 31179020 + 2 NA Intergenic Intergenic -14778 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 496-87 chr14 70012748 70013039 + 2 NA intron (NM_001034852, intron 9 of 11) L2|LINE|L2 34760 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 297-520 chr9 138080410 138080582 + 2 NA intron (NM_001243812, intron 35 of 45) L2|LINE|L2 -35425 NR_121582 101928786 Hs.678847 NR_121582 LOC101928786 - uncharacterized LOC101928786 ncRNA 371-325 chr5 127991726 127991977 + 2 NA intron (NR_152803, intron 1 of 1) intron (NR_152803, intron 1 of 1) 91324 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 326-152 chr14 68113576 68113892 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 290142 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 165-110 chr6 56934651 56934744 + 2 NA intron (NM_001144769, intron 2 of 96) intron (NM_001144769, intron 2 of 96) 20133 NM_001144769 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 113-54 chrX 15853027 15853084 + 2 NA intron (NM_001368994, intron 1 of 4) intron (NM_001368994, intron 1 of 4) 1758 NM_001272071 8905 Hs.121592 NM_003916 ENSG00000182287 AP1S2 DC22|MRX59|MRXS21|MRXS5|MRXSF|PGS|SIGMA1B adaptor related protein complex 1 subunit sigma 2 protein-coding 279-50 chr10 75964460 75964676 + 2 NA intron (NR_131178, intron 3 of 7) intron (NR_131178, intron 3 of 7) 181807 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 318-95 chr11 8584500 8584693 + 2 NA intron (NM_001289058, intron 1 of 13) intron (NM_001289058, intron 1 of 13) 9380 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 478-133 chr2 22691975 22692408 + 2 NA Intergenic Intergenic 155712 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 278-456 chr9 87070307 87070534 + 2 NA Intergenic Intergenic 14805 NR_036691 494127 Hs.626316 NR_036691 LOC494127 - NFYC pseudogene pseudo 573-32 chr11 2486002 2486379 + 2 NA intron (NM_181798, intron 1 of 15) L1MB2|LINE|L1 24736 NM_181798 3784 Hs.95162 NM_000218 ENSG00000053918 KCNQ1 ATFB1|ATFB3|JLNS1|KCNA8|KCNA9|KVLQT1|Kv1.9|Kv7.1|LQT|LQT1|RWS|SQT2|WRS potassium voltage-gated channel subfamily Q member 1 protein-coding 169-126 chr7 99496938 99497065 + 2 NA intron (NM_001345967, intron 1 of 1) MER44A|DNA|TcMar-Tigger 3280 NM_032164 84124 Hs.386324 NM_032164 ENSG00000160908 ZNF394 ZKSCAN14|ZSCAN46 zinc finger protein 394 protein-coding 154-24 chr12 58302492 58302629 + 2 NA Intergenic Intergenic 214668 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 241-429 chr9 136184681 136184803 + 2 NA Intergenic MamRep1151|LTR?|LTR? 16932 NM_001363746 8022 Hs.148427 NM_014564 ENSG00000107187 LHX3 CPHD3|LIM3|M2-LHX3 LIM homeobox 3 protein-coding 325-399 chr4 78664740 78665030 + 2 NA intron (NR_038307, intron 2 of 2) intron (NR_038307, intron 2 of 2) 18891 NR_038303 100505702 Hs.235795 NR_038303 LINC01094 - long intergenic non-protein coding RNA 1094 ncRNA 350-470 chr7 17034143 17034410 + 2 NA Intergenic Intergenic -152293 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 377-304 chr5 8787573 8787906 + 2 NA Intergenic Intergenic -51993 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 158-21 chr11 84796099 84796233 + 2 NA intron (NM_001351274, intron 5 of 26) L1MA2|LINE|L1 -75224 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 270-61 chr11 82221726 82221914 + 2 NA intron (NR_120571, intron 3 of 7) L1MB1|LINE|L1 182093 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 275-369 chr8 127092110 127092308 + 2 NA non-coding (NR_109833, exon 1 of 1) non-coding (NR_109833, exon 1 of 1) -9988 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 324-487 chr7 34214163 34214438 + 2 NA Intergenic Intergenic 308761 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 723-77 chr8 87246378 87246826 + 2 NA intron (NM_173538, intron 6 of 10) MLT1L|LTR|ERVL-MaLR 380187 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 453-288 chr8 111673087 111673322 + 2 NA Intergenic MER57A-int|LTR|ERV1 296565 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 286-354 chr5 41549444 41549639 + 2 NA Intergenic L2a|LINE|L2 -38940 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 227-80 chr12 42639463 42639672 + 2 NA intron (NR_110042, intron 3 of 5) intron (NR_110042, intron 3 of 5) 6931 NR_110042 101927058 Hs.434238 NR_110042 ENSG00000257510 LINC02402 - long intergenic non-protein coding RNA 2402 ncRNA 286-437 chr7 145223510 145223704 + 2 NA Intergenic Intergenic -387554 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 271-145 chr14 88948201 88948420 + 2 NA Intergenic Intergenic 123659 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 391-322 chr7 4622827 4623033 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -59365 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 348-391 chr5 12299048 12299394 + 2 NA Intergenic L1MA5|LINE|L1 -275636 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 584-87 chr20 51250298 51250779 + 2 NA Intergenic Intergenic 202439 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 361-383 chr5 179084462 179084724 + 2 NA TTS (NM_014594) TTS (NM_014594) 24220 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 250-193 chr2 41791234 41791437 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -86220 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 185-90 chr2 48203901 48204040 + 2 NA Intergenic AluJr4|SINE|Alu -110712 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 124-33 chr17 65839481 65839562 + 2 NA intron (NM_001353129, intron 21 of 26) L1MA4|LINE|L1 -12978 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 354-31 chr1 197498346 197498665 + 2 NA Intergenic L1MEf|LINE|L1 230253 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 325-62 chr10 57240214 57240495 + 2 NA Intergenic Intergenic 64205 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 523-141 chr2 145159043 145159387 + 2 NA Intergenic Intergenic 491248 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 381-392 chr8 130963619 130963880 + 2 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 77160 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 863-6 chr11 83686233 83686762 + 2 NA intron (NM_001142699, intron 18 of 27) L2a|LINE|L2 -4072 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 334-441 chr5 140789423 140789682 + 2 NA TTS (NM_031410) TTS (NM_031410) 3416 NM_031410 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 749-51 chr2 82748834 82749399 + 2 NA Intergenic L1PA12|LINE|L1 -107687 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 285-224 chr2 175492479 175492709 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -310884 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 388-338 chr8 35751571 35751812 + 2 NA intron (NM_001322818, intron 13 of 16) intron (NM_001322818, intron 13 of 16) -41371 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 377-230 chr2 181590029 181590334 + 2 NA intron (NR_027690, intron 2 of 11) AluSz6|SINE|Alu 66924 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 192-56 chr13 76379737 76379870 + 2 NA Intergenic Intergenic -444671 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 320-550 chr8 85604720 85604954 + 2 NA Intergenic Intergenic 50839 NR_003594 100288527 Hs.535056 NR_003594 REXO1L2P - REXO1 like 2, pseudogene pseudo 377-269 chr3 95838747 95839074 + 2 NA Intergenic Intergenic -155717 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 544-31 chr10 64477701 64478109 + 2 NA Intergenic Intergenic -347623 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 583-91 chr2 137452779 137453286 + 2 NA intron (NM_001316349, intron 15 of 27) intron (NM_001316349, intron 15 of 27) 474900 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 175-49 chr14 53368419 53368566 + 2 NA Intergenic Intergenic 215138 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 209-307 chr7 112834788 112834930 + 2 NA intron (NM_152556, intron 3 of 4) MER44D|DNA|TcMar-Tigger -44436 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 423-258 chr6 166666264 166666614 + 2 NA intron (NM_001006932, intron 2 of 21) L1MB3|LINE|L1 -39188 NM_021135 6196 Hs.655277 NM_021135 ENSG00000071242 RPS6KA2 HU-2|MAPKAPK1C|RSK|RSK3|S6K-alpha|S6K-alpha2|p90-RSK3|p90RSK2|pp90RSK3 ribosomal protein S6 kinase A2 protein-coding 251-317 chr5 133694852 133695094 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -82432 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 263-90 chr13 34110440 34110630 + 2 NA Intergenic Intergenic -237508 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 436-258 chr5 180276919 180277180 + 2 NA intron (NM_001364608, intron 3 of 12) intron (NM_001364608, intron 3 of 12) 3559 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 832-16 chr2 175450823 175451387 + 2 NA Intergenic LOR1b|LTR|ERV1 -269395 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 186-122 chr4 91332446 91332607 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 944776 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 216-133 chr17 59090304 59090469 + 2 NA intron (NM_001320990, intron 3 of 23) intron (NM_001320990, intron 3 of 23) 16494 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 162-24 chr12 1200247 1200389 + 2 NA intron (NM_001301248, intron 11 of 18) intron (NM_001301248, intron 11 of 18) 172570 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 443-239 chr5 29941487 29941857 + 2 NA Intergenic L2c|LINE|L2 61112 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 263-435 chr8 135727025 135727242 + 2 NA Intergenic Intergenic 269677 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 323-234 chr2 29607892 29608093 + 2 NA intron (NM_004304, intron 3 of 28) L1PA13|LINE|L1 -132615 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 384-301 chr5 129528110 129528423 + 2 NA intron (NM_133638, intron 5 of 22) intron (NM_133638, intron 5 of 22) -67577 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 389-273 chr4 150999891 151000253 + 2 NA intron (NM_001367550, intron 2 of 56) MER44B|DNA|TcMar-Tigger 15195 NM_001199282 987 Hs.480938 NM_006726 ENSG00000198589 LRBA BGL|CDC4L|CVID8|LAB300|LBA LPS responsive beige-like anchor protein protein-coding 758-66 chr5 155792585 155793134 + 2 NA Intergenic L1PA16|LINE|L1 -533898 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 376-254 chr3 99185981 99186193 + 2 NA Intergenic L1M1|LINE|L1 -284392 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 158-18 chr11 25565837 25565936 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -623237 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 336-313 chr20 6988859 6989122 + 2 NA Intergenic HAL1|LINE|L1 221304 NM_001200 650 Hs.73853 NM_001200 ENSG00000125845 BMP2 BDA2|BMP2A|SSFSC bone morphogenetic protein 2 protein-coding 309-383 chr4 35198581 35198812 + 2 NA Intergenic Intergenic -928949 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 309-165 chr14 87908995 87909193 + 2 NA Intergenic Intergenic 84088 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 313-400 chr4 101570783 101570952 + 2 NA Intergenic MER89|LTR|ERV1 -219740 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 272-352 chr5 88336354 88336514 + 2 NA intron (NR_105019, intron 6 of 7) L1MD1|LINE|L1 -55761 NR_105020 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 300-41 chr10 51047977 51048216 + 2 NA intron (NM_001098512, intron 1 of 17) intron (NM_001098512, intron 1 of 17) 20456 NR_120678 102724719 NR_120678 ENSG00000223502 LOC102724719 - uncharacterized LOC102724719 ncRNA 171-124 chr7 79653021 79653139 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 199120 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 288-443 chr8 85075299 85075537 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -31820 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 158-55 chr2 123087742 123087839 + 2 NA Intergenic L1ME1|LINE|L1 -14309 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 214-294 chr7 25328707 25328837 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -100286 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 409-211 chr4 7610917 7611167 + 2 NA intron (NM_020777, intron 3 of 26) intron (NM_020777, intron 3 of 26) -143048 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 215-42 chr10 95448786 95448954 + 2 NA intron (NM_001290295, intron 2 of 24) intron (NM_001290295, intron 2 of 24) -7690 NM_001290298 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 249-105 chr13 82171742 82171866 + 2 NA Intergenic L1MA5|LINE|L1 -944821 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 319-550 chr8 129800990 129801165 + 2 NA Intergenic L1MA3|LINE|L1 -14453 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 516-13 chr1 198095550 198095903 + 2 NA Intergenic Intergenic -61272 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 285-271 chr3 84668181 84668366 + 2 NA non-coding (NR_033860, exon 19 of 21) non-coding (NR_033860, exon 19 of 21) 201302 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 407-201 chr3 97524774 97525108 + 2 NA intron (NM_001080448, intron 10 of 17) L1M2|LINE|L1 85334 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 369-397 chr8 46302810 46303043 + 2 NA Intergenic ALR/Alpha|Satellite|centr 314717 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 342-472 chr6 164861727 164861907 + 2 NA Intergenic Intergenic -39754 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 399-202 chr3 25867031 25867278 + 2 NA intron (NR_034055, intron 4 of 7) CR1_Mam|LINE|CR1 6541 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 306-160 chr15 26789277 26789489 + 2 NA Intergenic Intergenic -15620 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 166-95 chr5 44699672 44699781 + 2 NA Intergenic Intergenic 109067 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 372-260 chr2 136654560 136654862 + 2 NA Intergenic Intergenic -110834 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 382-257 chr3 18027143 18027375 + 2 NA intron (NR_161333, intron 3 of 4) intron (NR_161333, intron 3 of 4) 64707 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 227-371 chr8 64180003 64180192 + 2 NA intron (NR_125826, intron 1 of 4) L1MA9|LINE|L1 188461 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 582-106 chr4 46731085 46731485 + 2 NA Intergenic MLT2F|LTR|ERVL 177960 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 155-39 chr14 48913633 48913763 + 2 NA Intergenic Intergenic 672682 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 468-297 chr7 49368953 49369313 + 2 NA Intergenic L1MA9|LINE|L1 -404505 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 395-188 chr2 180223064 180223370 + 2 NA Intergenic LTR33C|LTR|ERVL -215920 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 381-304 chr5 34925402 34925709 + 2 NA 3' UTR (NM_018321, exon 10 of 10) 3' UTR (NM_018321, exon 10 of 10) -4004 NM_001012339 134218 Hs.131887 NM_194283 ENSG00000168724 DNAJC21 BMFS3|DNAJA5|GS3|JJJ1 DnaJ heat shock protein family (Hsp40) member C21 protein-coding 332-11 chr1 80594839 80595140 + 2 NA intron (NR_125940, intron 2 of 3) L1PB1|LINE|L1 -46298 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 676-7 chr1 106599856 106600417 + 2 NA Intergenic Intergenic -218103 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 682-48 chr2 55901201 55901638 + 2 NA intron (NM_001039349, intron 4 of 10) intron (NM_001039349, intron 4 of 10) 22363 NM_001039349 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 253-233 chr21 24284793 24284975 + 2 NA Intergenic AluSp|SINE|Alu 36493 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 244-326 chr6 101351526 101351679 + 2 NA Intergenic Intergenic -47383 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 310-7 chr1 81095638 81095845 + 2 NA Intergenic L2a|LINE|L2 -210451 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 274-365 chr7 114520795 114520946 + 2 NA intron (NR_033767, intron 2 of 17) L1ME3G|LINE|L1 94368 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 297-519 chr9 137830313 137830544 + 2 NA intron (NM_001354263, intron 25 of 26) L1MC5a|LINE|L1 -7991 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 504-285 chrX 57997925 57998407 + 2 NA Intergenic L1M1|LINE|L1 -87533 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 576-33 chr12 56150239 56150704 + 2 NA Intergenic FLAM_C|SINE|Alu -2116 NM_001199629 140465 Hs.632731 NM_002475 ENSG00000196465 MYL6B MLC1SA myosin light chain 6B protein-coding 193-115 chr2 136888081 136888221 + 2 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 122606 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 363-477 chr9 84469685 84470019 + 2 NA Intergenic AluSc|SINE|Alu -101125 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 194-140 chr4 31080653 31080842 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -90397 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 243-243 chr2 192943160 192943379 + 2 NA Intergenic L1M4b|LINE|L1 193424 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 328-538 chr7 62803938 62804182 + 2 NA Intergenic ALR/Alpha|Satellite|centr 499996 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 653-14 chr10 29209522 29209993 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -79313 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 229-34 chr10 64183566 64183771 + 2 NA Intergenic L1ME3G|LINE|L1 -641860 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 245-85 chr11 100431888 100432069 + 2 NA Intergenic Intergenic -255310 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 358-33 chr10 16021497 16021727 + 2 NA Intergenic Intergenic -161079 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 370-204 chr19 37753428 37753656 + 2 NA intron (NM_001172690, intron 4 of 4) L1M7|LINE|L1 26048 NM_001172692 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 396-189 chr20 14844501 14844824 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 84856 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 126-18 chr12 40702363 40702479 + 2 NA intron (NM_001256063, intron 1 of 15) L1ME3A|LINE|L1 9979 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 124-71 chr8 85278292 85278375 + 2 NA intron (NM_198584, intron 6 of 6) MER5A|DNA|hAT-Charlie 32875 NM_198584 377677 Hs.127189 NM_198584 ENSG00000185015 CA13 CAXIII carbonic anhydrase 13 protein-coding 217-250 chr4 30170798 30170962 + 2 NA Intergenic Intergenic -549489 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 364-205 chr2 71848377 71848614 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 299367 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 400-349 chr8 110220664 110220963 + 2 NA Intergenic Intergenic -245042 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 536-151 chr20 59766679 59767113 + 2 NA intron (NM_183246, intron 4 of 11) intron (NM_183246, intron 4 of 11) 45686 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 301-380 chr5 162623962 162624216 + 2 NA Intergenic Intergenic 556447 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 252-370 chr6 62080160 62080351 + 2 NA intron (NR_146874, intron 2 of 13) MIR|SINE|MIR 205970 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 351-349 chr4 67484173 67484482 + 2 NA intron (NR_155754, intron 17 of 18) Tigger3b|DNA|TcMar-Tigger 61176 NM_001362481 1060 Hs.479867 NM_001812 ENSG00000145241 CENPC CENP-C|CENPC1|MIF2|hcp-4 centromere protein C protein-coding 249-14 chr1 94639471 94639685 + 2 NA intron (NR_160780, intron 3 of 5) L1MB7|LINE|L1 95876 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 209-253 chr5 53404388 53404509 + 2 NA Intergenic Intergenic -76181 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 368-351 chr5 13224676 13224982 + 2 NA Intergenic L1MA2|LINE|L1 -191943 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 279-415 chr8 63052932 63053146 + 2 NA Intergenic Intergenic -14233 NM_003878 8836 Hs.78619 NM_003878 ENSG00000137563 GGH GH gamma-glutamyl hydrolase protein-coding 478-30 chr10 82961367 82961687 + 2 NA intron (NR_163253, intron 8 of 10) intron (NR_163253, intron 8 of 10) 715562 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 294-110 chr14 42264045 42264301 + 2 NA Intergenic L1MA10|LINE|L1 657317 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 231-309 chr6 62803822 62803969 + 2 NA Intergenic L1PB1|LINE|L1 516082 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 416-309 chr7 53340604 53340955 + 2 NA Intergenic MER4-int|LTR|ERV1 305146 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 436-60 chr12 25072111 25072494 + 2 NA intron (NR_159367, intron 5 of 19) intron (NR_159367, intron 5 of 19) 19596 NM_006152 4033 Hs.124922 NM_006152 ENSG00000118308 LRMP JAW1 lymphoid restricted membrane protein protein-coding 236-35 chr10 15450830 15451024 + 2 NA Intergenic Intergenic -79638 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 237-275 chr4 139810659 139810864 + 2 NA intron (NM_018717, intron 2 of 4) intron (NM_018717, intron 2 of 4) 144942 NM_001204368 4258 Hs.81874 NM_002413 ENSG00000085871 MGST2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 487-245 chr6 51255832 51256158 + 2 NA Intergenic Intergenic -365875 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 215-108 chr16 83017046 83017161 + 2 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) -26805 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 275-327 chr7 39103423 39103638 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -89963 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 382-310 chr4 162473997 162474291 + 2 NA Intergenic AluJr4|SINE|Alu -310110 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 361-415 chr7 53048199 53048510 + 2 NA Intergenic Intergenic 12721 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 170-26 chr11 44372136 44372280 + 2 NA Intergenic Intergenic -62069 NM_021926 60529 Hs.436055 NM_021926 ENSG00000052850 ALX4 CRS5|FND2 ALX homeobox 4 protein-coding 511-254 chr8 41564134 41564594 + 2 NA intron (NR_125824, intron 1 of 2) AluJb|SINE|Alu -13836 NM_178819 137964 Hs.355753 NM_178819 ENSG00000158669 GPAT4 1-AGPAT 6|AGPAT6|LPAAT-zeta|LPAATZ|TSARG7 glycerol-3-phosphate acyltransferase 4 protein-coding 181-172 chrX 97732460 97732627 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 -168008 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 510-104 chr17 56014378 56014824 + 2 NA Intergenic AluSx1|SINE|Alu -138874 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 247-182 chr2 1842911 1843089 + 2 NA intron (NM_015025, intron 19 of 24) CpG -98485 NM_012293 7837 Hs.332197 NM_012293 ENSG00000130508 PXDN ASGD7|COPOA|D2S448|D2S448E|MG50|PRG2|PXN|VPO peroxidasin protein-coding 190-32 chr12 2136541 2136707 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 83339 NM_199460 775 Hs.118262 NM_000719 ENSG00000151067 CACNA1C CACH2|CACN2|CACNL1A1|CCHL1A1|CaV1.2|LQT8|TS|TS. LQT8 calcium voltage-gated channel subunit alpha1 C protein-coding 557-154 chr5 25680368 25680882 + 2 NA Intergenic Intergenic 489672 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 208-94 chr17 70821442 70821647 + 2 NA Intergenic HERVL-int|LTR|ERVL 380635 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 498-164 chr3 24529363 24529769 + 2 NA Intergenic L1MC4|LINE|L1 -33858 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 769-64 chr7 98694561 98695125 + 2 NA Intergenic Intergenic 77558 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 875-25 chr4 49107290 49107941 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 120973 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 332-107 chr11 112806781 112807100 + 2 NA Intergenic Intergenic -154480 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 272-414 chr7 39125699 39125867 + 2 NA intron (NM_001370959, intron 2 of 9) intron (NM_001370959, intron 2 of 9) -112216 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 298-315 chr4 28157160 28157330 + 2 NA Intergenic Intergenic -662337 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 951-29 chr7 70175523 70176173 + 2 NA intron (NM_015570, intron 4 of 18) Tigger1|DNA|TcMar-Tigger 577373 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 316-406 chr4 99332376 99332677 + 2 NA Intergenic Intergenic -11125 NM_001286650 125 Hs.4 NM_000668 ENSG00000196616 ADH1B ADH2|HEL-S-117 alcohol dehydrogenase 1B (class I), beta polypeptide protein-coding 316-313 chr20 7775864 7776100 + 2 NA Intergenic Intergenic 164476 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 383-48 chr11 26101357 26101627 + 2 NA Intergenic L1MC5a|LINE|L1 -87631 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 450-117 chr18 61148121 61148516 + 2 NA Intergenic Intergenic -185112 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 265-414 chr9 76273741 76273985 + 2 NA intron (NM_001190482, intron 24 of 36) AluJo|SINE|Alu 120563 NM_018339 55312 Hs.37558 NM_018339 ENSG00000135002 RFK RIFK riboflavin kinase protein-coding 352-41 chr10 37911529 37911724 + 2 NA Intergenic AluSp|SINE|Alu -53523 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 477-149 chr2 56240540 56240920 + 2 NA intron (NM_001348516, intron 2 of 2) L1MB7|LINE|L1 -54960 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 317-358 chr4 82131498 82131744 + 2 NA Intergenic Intergenic 242370 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 185-180 chr6 55836384 55836540 + 2 NA intron (NM_001329754, intron 1 of 5) intron (NM_001329754, intron 1 of 5) 39128 NM_001329754 653 Hs.296648 NM_021073 ENSG00000112175 BMP5 - bone morphogenetic protein 5 protein-coding 326-450 chr6 48542584 48542834 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -474020 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 391-231 chr3 56450033 56450374 + 2 NA intron (NR_132749, intron 1 of 17) intron (NR_132749, intron 1 of 17) 18264 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 387-62 chr11 79742819 79743092 + 2 NA Intergenic MamRep38|DNA|hAT -301925 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 349-4 chr1 9288943 9289130 + 2 NA Intergenic Intergenic -3858 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 391-27 chr1 213100575 213100936 + 2 NA intron (NM_001349671, intron 4 of 12) L1PA17|LINE|L1 49514 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 128-34 chr2 166595263 166595374 + 2 NA Intergenic L1MA3|LINE|L1 -108347 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 224-159 chr2 161151481 161151639 + 2 NA intron (NM_004180, intron 1 of 7) L1MB5|LINE|L1 -8868 NM_001199135 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 170-24 chr11 32102804 32102962 + 2 NA intron (NM_002901, intron 4 of 5) MIR|SINE|MIR 11809 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 195-74 chr16 26526570 26526721 + 2 NA Intergenic MIR|SINE|MIR 501408 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 455-186 chr4 72773286 72773636 + 2 NA Intergenic Intergenic -204240 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 224-297 chr7 47068267 47068420 + 2 NA Intergenic Intergenic -371221 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 466-62 chr12 44905675 44905992 + 2 NA intron (NM_001145110, intron 1 of 20) L2a|LINE|L2 8095 NM_001145110 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 359-329 chr3 104888006 104888257 + 2 NA Intergenic Intergenic -478582 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 476-197 chr4 65565837 65566187 + 2 NA intron (NM_001281767, intron 3 of 16) intron (NM_001281767, intron 3 of 16) 103476 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 966-7 chr14 46022726 46023506 + 2 NA Intergenic Intergenic -41043 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 311-120 chr13 67032738 67032947 + 2 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 41956 NR_046637 100874087 Hs.606903 NR_046637 ENSG00000233840 PCDH9-AS4 - PCDH9 antisense RNA 4 ncRNA 270-210 chr20 43263389 43263588 + 2 NA Intergenic MamGypLTR1b|LTR|Gypsy -73582 NM_007050 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 224-38 chr10 89714967 89715167 + 2 NA exon (NM_001284259, exon 8 of 33) exon (NM_001284259, exon 8 of 33) 13477 NM_001284259 9585 Hs.240 NM_016195 ENSG00000138182 KIF20B CT90|KRMP1|MPHOSPH1|MPP-1|MPP1 kinesin family member 20B protein-coding 311-83 chr11 82141377 82141680 + 2 NA intron (NR_120571, intron 3 of 7) L1MC|LINE|L1 -250692 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 270-340 chr6 146460163 146460348 + 2 NA Intergenic L1MA4|LINE|L1 -83578 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 217-191 chr2 176875751 176875892 + 2 NA Intergenic Intergenic 238067 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 229-406 chr9 2844536 2844759 + 2 NA promoter-TSS (NM_014878) promoter-TSS (NM_014878) -552 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 520-34 chr10 58562216 58562654 + 2 NA intron (NM_001080512, intron 1 of 20) L1M2|LINE|L1 49563 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 222-38 chr10 61450315 61450527 + 2 NA intron (NR_134508, intron 1 of 6) intron (NR_134508, intron 1 of 6) -2218 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 509-27 chr10 102278652 102279002 + 2 NA intron (NM_001199378, intron 3 of 39) L1MC4|LINE|L1 33295 NM_004193 8729 Hs.290243 NM_004193 ENSG00000107862 GBF1 ARF1GEF golgi brefeldin A resistant guanine nucleotide exchange factor 1 protein-coding 382-416 chr8 108663808 108664058 + 2 NA intron (NR_136411, intron 1 of 3) L1PA11|LINE|L1 123661 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 290-490 chrX 50283060 50283311 + 2 NA intron (NM_033031, intron 1 of 12) MIRb|SINE|MIR -1357 NM_033670 85417 Hs.130310 NM_033031 ENSG00000147082 CCNB3 - cyclin B3 protein-coding 357-434 chr8 60364922 60365141 + 2 NA Intergenic L1M4b|LINE|L1 48787 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 232-9 chr1 97658364 97658569 + 2 NA intron (NM_000110, intron 8 of 22) intron (NM_000110, intron 8 of 22) -138455 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 272-172 chr2 12581089 12581242 + 2 NA Intergenic HERV16-int|LTR|ERVL -135707 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 246-188 chr2 41347367 41347605 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -530069 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 298-369 chr5 86465096 86465329 + 2 NA Intergenic HERVE-int|LTR|ERV1 -152729 NM_001867 1350 Hs.430075 NM_001867 ENSG00000127184 COX7C - cytochrome c oxidase subunit 7C protein-coding 276-100 chr12 16215777 16216011 + 2 NA intron (NM_001170798, intron 7 of 8) L2a|LINE|L2 61791 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 358-445 chr7 67906687 67906930 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -113445 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 239-98 chr14 50480429 50480657 + 2 NA intron (NM_198794, intron 6 of 31) L1MA1|LINE|L1 52026 NM_006575 11183 Hs.130491 NM_006575 ENSG00000012983 MAP4K5 GCKR|KHS|KHS1|MAPKKKK5 mitogen-activated protein kinase kinase kinase kinase 5 protein-coding 299-294 chr3 114911611 114911893 + 2 NA intron (NM_001348805, intron 3 of 10) L1M2|LINE|L1 -11127 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 343-266 chr2 121157976 121158182 + 2 NA Intergenic L1MDa|LINE|L1 127123 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 138-48 chr3 259403 259501 + 2 NA intron (NM_001253387, intron 2 of 26) intron (NM_001253387, intron 2 of 26) -60231 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 410-119 chr19 52112661 52112927 + 2 NA TTS (NR_135823) TTS (NR_135823) -17029 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 380-107 chr13 49135895 49136259 + 2 NA intron (NM_001079673, intron 5 of 25) intron (NM_001079673, intron 5 of 25) 25760 NM_014923 22862 Hs.508010 NM_014923 ENSG00000102531 FNDC3A FNDC3|HUGO|bA203I16.1|bA203I16.5 fibronectin type III domain containing 3A protein-coding 427-239 chr7 25684278 25684599 + 2 NA intron (NR_157808, intron 1 of 4) L1ME4b|LINE|L1 -13707 NR_157816 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 174-133 chr6 139485304 139485438 + 2 NA Intergenic L1MA8|LINE|L1 -10775 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 420-188 chr3 102137133 102137406 + 2 NA Intergenic L1MC1|LINE|L1 -26436 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 453-12 chr1 174536722 174537021 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 88907 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 319-6 chr1 58342679 58342988 + 2 NA Intergenic L2b|LINE|L2 -92286 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 307-214 chr19 32966866 32967100 + 2 NA intron (NM_032816, intron 1 of 18) AluJr|SINE|Alu 4975 NM_032816 84902 Hs.599703 NM_032816 ENSG00000121289 CEP89 CCDC123|CEP123 centrosomal protein 89 protein-coding 310-230 chr2 49529590 49529800 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -375168 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 344-380 chr5 38248945 38249209 + 2 NA Intergenic Intergenic -9482 NM_152403 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 323-547 chr8 83697979 83698221 + 2 NA Intergenic L1ME3A|LINE|L1 294342 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 167-53 chr2 37627894 37628035 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 44235 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 286-375 chr5 173100303 173100520 + 2 NA intron (NM_153607, intron 4 of 8) L1MA9|LINE|L1 44059 NM_001168394 153222 Hs.484195 NM_153607 ENSG00000164463 CREBRF C5orf41|LRF CREB3 regulatory factor protein-coding 254-215 chr2 240668890 240669100 + 2 NA Intergenic L1MCa|LINE|L1 13890 NM_001102467 653437 Hs.437167 NM_001102467 ENSG00000185176 AQP12B INSSA3 aquaporin 12B protein-coding 269-245 chr3 7194127 7194366 + 2 NA intron (NM_000844, intron 2 of 9) intron (NM_000844, intron 2 of 9) -300229 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 616-62 chr18 4526977 4527434 + 2 NA Intergenic L1MA2|LINE|L1 -71898 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 308-74 chr10 125672832 125673067 + 2 NA intron (NM_001128202, intron 1 of 3) L1PA10|LINE|L1 10214 NM_001128202 387718 Hs.148259 NM_001128202 ENSG00000175018 TEX36 C10orf122|bA383C5.1 testis expressed 36 protein-coding 302-61 chr10 123692878 123693073 + 2 NA 3' UTR (NM_153442, exon 3 of 3) 3' UTR (NM_153442, exon 3 of 3) 26620 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 497-307 chrX 46289936 46290344 + 2 NA Intergenic L1MA8|LINE|L1 37534 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 329-177 chr15 27384636 27384918 + 2 NA intron (NM_001270873, intron 5 of 5) intron (NM_001270873, intron 5 of 5) -223458 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 730-52 chr4 43490859 43491535 + 2 NA intron (NR_146993, intron 1 of 2) AluYc3|SINE|Alu 1346 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 506-2 chr1 36941839 36942311 + 2 NA intron (NM_000831, intron 1 of 15) intron (NM_000831, intron 1 of 15) 92440 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 382-154 chr18 42800178 42800511 + 2 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 315341 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 264-366 chr6 98144747 98144969 + 2 NA Intergenic Intergenic 120327 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 380-121 chr14 55984442 55984777 + 2 NA Intergenic LTR16D2|LTR|ERVL -133802 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 191-107 chr2 137709426 137709557 + 2 NA Intergenic Intergenic 218441 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 597-56 chr17 10985656 10986109 + 2 NA Intergenic MIRb|SINE|MIR -147795 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 354-114 chr12 114203065 114203262 + 2 NA Intergenic MIR|SINE|MIR 38607 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 497-302 chr9 105906189 105906630 + 2 NA Intergenic Intergenic 211868 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 458-220 chr6 28305392 28305689 + 2 NA Intergenic Intergenic 24003 NM_032507 84547 Hs.144527 NM_032507 ENSG00000137338 PGBD1 HUCEP-4|SCAND4|dJ874C20.4 piggyBac transposable element derived 1 protein-coding 759-74 chr8 122373235 122373822 + 2 NA Intergenic Intergenic 195116 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 294-282 chr3 13724342 13724542 + 2 NA intron (NR_027103, intron 4 of 5) L1M4b|LINE|L1 73721 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 228-329 chr8 5350551 5350721 + 2 NA Intergenic Intergenic -355722 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 248-354 chr6 88190510 88190734 + 2 NA Intergenic Intergenic -23273 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 228-215 chr3 77689939 77690088 + 2 NA Intergenic Intergenic 358950 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 360-131 chr14 83484319 83484571 + 2 NA Intergenic Intergenic 841813 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 455-66 chr13 90357850 90358242 + 2 NA Intergenic L1MC1|LINE|L1 126864 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 387-352 chr8 20790751 20791102 + 2 NA Intergenic Intergenic -162707 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 458-53 chr12 114524899 114525179 + 2 NA Intergenic Intergenic -116597 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 606-9 chr1 181840163 181840726 + 2 NA Intergenic L1MB3|LINE|L1 221268 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 456-73 chr13 25448774 25449142 + 2 NA intron (NM_016529, intron 1 of 36) AluSx1|SINE|Alu -19816 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 311-301 chr20 42044669 42044921 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -426418 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 330-19 chr1 76558737 76559021 + 2 NA intron (NM_001349109, intron 3 of 3) L1MD1|LINE|L1 220388 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 323-419 chr5 79964554 79964835 + 2 NA intron (NR_131226, intron 2 of 2) L2c|LINE|L2 26568 NM_001010891 345778 Hs.531418 NM_001010891 ENSG00000177034 MTX3 - metaxin 3 protein-coding 227-230 chr3 89831449 89831647 + 2 NA Intergenic Intergenic 723927 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 244-327 chr6 113674319 113674531 + 2 NA Intergenic Intergenic -24350 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 206-220 chr5 144940160 144940323 + 2 NA Intergenic L1PB4|LINE|L1 734850 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 261-374 chr8 67717526 67717717 + 2 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 28739 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 321-267 chr19 51916308 51916474 + 2 NA Intergenic Intergenic -11081 NM_024840 79898 Hs.183390 NM_024840 ENSG00000176024 ZNF613 - zinc finger protein 613 protein-coding 272-228 chr2 198623607 198623773 + 2 NA Intergenic Intergenic -248593 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 367-113 chr13 74640994 74641286 + 2 NA Intergenic Intergenic 88297 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 260-387 chr6 126671642 126671821 + 2 NA Intergenic L1MEg|LINE|L1 187100 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 216-346 chr8 142264102 142264255 + 2 NA intron (NM_001366901, intron 12 of 13) L1MEd|LINE|L1 65822 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 335-160 chr14 63443805 63444010 + 2 NA intron (NR_104104, intron 2 of 12) intron (NR_104104, intron 2 of 12) 64331 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 493-201 chr3 74666813 74667248 + 2 NA Intergenic Intergenic -145890 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 330-147 chr14 21928963 21929208 + 2 NA Intergenic Intergenic -258068 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 196-45 chr11 26760958 26761097 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -38967 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 568-30 chr11 93457900 93458275 + 2 NA Intergenic L1MD1|LINE|L1 85304 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 366-76 chr11 59246343 59246650 + 2 NA Intergenic Intergenic -33569 NM_001039396 219972 Hs.744920 NM_001039396 ENSG00000197629 MPEG1 MPG1|MPS1|Mpg-1|P-2 macrophage expressed 1 protein-coding 333-549 chr7 110835179 110835415 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -255709 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 302-393 chr6 155520149 155520386 + 2 NA intron (NR_134597, intron 2 of 2) MLT1H2|LTR|ERVL-MaLR 5423 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 458-110 chr18 72771886 72772209 + 2 NA intron (NR_148694, intron 7 of 11) MLT1E1A|LTR|ERVL-MaLR 81335 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 547-61 chr14 29353909 29354268 + 2 NA Intergenic Intergenic -568301 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 221-162 chr20 12613310 12613523 + 2 NA Intergenic L1ME3E|LINE|L1 323547 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 214-154 chr2 31528043 31528186 + 2 NA intron (NM_000348, intron 4 of 4) intron (NM_000348, intron 4 of 4) 52824 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 275-277 chr4 137971040 137971299 + 2 NA Intergenic Intergenic -117845 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 336-181 chr15 87625466 87625652 + 2 NA Intergenic L2|LINE|L2 48630 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 291-73 chr11 48578341 48578561 + 2 NA Intergenic Intergenic 89658 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 361-364 chr5 91821163 91821467 + 2 NA Intergenic L1PA7|LINE|L1 -437998 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 425-237 chr5 110553404 110553784 + 2 NA intron (NM_001039763, intron 11 of 13) L1PA13|LINE|L1 -39679 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 579-158 chr7 125564657 125564974 + 2 NA Intergenic L1M7|LINE|L1 -300524 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 582-32 chr13 61800256 61800717 + 2 NA Intergenic Intergenic 229062 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 254-434 chr8 138800965 138801145 + 2 NA intron (NM_152888, intron 11 of 64) MIRb|SINE|MIR 112986 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 231-132 chr18 3743950 3744158 + 2 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 101304 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 312-108 chr12 74231516 74231766 + 2 NA intron (NR_038300, intron 3 of 6) ERVL-B4-int|LTR|ERVL 60990 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 326-369 chr4 40388553 40388825 + 2 NA Intergenic MIRc|SINE|MIR 53356 NM_017581 55584 Hs.272278 NM_017581 ENSG00000174343 CHRNA9 HSA243342|NACHRA9 cholinergic receptor nicotinic alpha 9 subunit protein-coding 247-16 chr1 114957577 114957791 + 2 NA intron (NM_001282541, intron 27 of 31) L1MA4|LINE|L1 -72140 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 339-200 chr16 65899096 65899353 + 2 NA Intergenic MIRc|SINE|MIR -322924 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 545-43 chr11 91563743 91564123 + 2 NA Intergenic Intergenic -661101 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 328-365 chr3 133700353 133700532 + 2 NA intron (NM_001354703, intron 2 of 22) intron (NM_001354703, intron 2 of 22) 38444 NM_001354703 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 540-200 chr7 78851577 78851944 + 2 NA intron (NM_001301128, intron 2 of 20) L1ME3F|LINE|L1 -157228 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 242-414 chr8 127919891 127920108 + 2 NA intron (NR_003367, intron 2 of 8) intron (NR_003367, intron 2 of 8) 28724 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 128-3 chr1 55954101 55954199 + 2 NA Intergenic Intergenic 9063 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 218-230 chr3 181792100 181792275 + 2 NA Intergenic Intergenic 80262 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 471-267 chr8 102429639 102429962 + 2 NA Intergenic Intergenic -17100 NM_015902 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 362-473 chrX 36460671 36460999 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -20543 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 378-299 chr4 30284362 30284659 + 2 NA Intergenic Intergenic -435859 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 428-42 chr12 13644913 13645248 + 2 NA intron (NM_000834, intron 4 of 12) Tigger1|DNA|TcMar-Tigger -268335 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 237-386 chr8 118562957 118563125 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -57960 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 432-111 chr18 75500929 75501286 + 2 NA Intergenic Intergenic -73404 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 199-87 chr18 7531555 7531711 + 2 NA Intergenic Intergenic -35683 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 213-243 chr5 156839855 156840032 + 2 NA Intergenic L2a|LINE|L2 -10352 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 368-437 chr7 135023517 135023837 + 2 NA intron (NR_144293, intron 4 of 10) L1P4a|LINE|L1 37169 NM_001345850 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 399-27 chr10 20133667 20133920 + 2 NA intron (NM_032812, intron 4 of 13) L1MA9|LINE|L1 317361 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 622-87 chr3 81877504 81878056 + 2 NA Intergenic Intergenic -108362 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 546-201 chr5 178405206 178405577 + 2 NA intron (NM_173465, intron 2 of 28) L1ME1|LINE|L1 -172569 NR_103510 85007 Hs.248746 NM_153373 ENSG00000175309 PHYKPL AGXT2L2|PHLU 5-phosphohydroxy-L-lysine phospho-lyase protein-coding 344-281 chr20 48242281 48242556 + 2 NA Intergenic Intergenic -117493 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 503-158 chr2 133221783 133222109 + 2 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -44249 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 582-145 chr8 40548326 40548710 + 2 NA intron (NM_024645, intron 6 of 6) intron (NM_024645, intron 6 of 6) -205155 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 192-70 chr15 49761894 49762028 + 2 NA Intergenic Intergenic 140913 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 353-499 chr7 118341564 118341787 + 2 NA Intergenic Intergenic 116971 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 241-67 chr11 60417241 60417419 + 2 NA non-coding (NR_049731, exon 6 of 6) non-coding (NR_049731, exon 6 of 6) -12242 NM_023945 64232 Hs.178066 NM_023945 ENSG00000166930 MS4A5 CD20-L2|CD20L2|TETM4 membrane spanning 4-domains A5 protein-coding 359-118 chr12 44496419 44496604 + 2 NA Intergenic MIR|SINE|MIR 379150 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 357-20 chr1 196391834 196392146 + 2 NA intron (NM_001287820, intron 13 of 26) intron (NM_001287820, intron 13 of 26) 190491 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 170-4 chr1 55631135 55631289 + 2 NA Intergenic L1ME3E|LINE|L1 313751 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 255-334 chr5 99889332 99889582 + 2 NA Intergenic Intergenic 355467 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 618-98 chr5 83733866 83734254 + 2 NA Intergenic L1P3b|LINE|L1 -13205 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 236-269 chr4 180712538 180712719 + 2 NA Intergenic Intergenic 446521 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 357-206 chr2 88152006 88152271 + 2 NA Intergenic L1MA5|LINE|L1 -18157 NM_001244678 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 464-256 chr8 84067662 84068049 + 2 NA Intergenic MIR|SINE|MIR -114932 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 565-100 chr20 40060846 40061367 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 56645 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 293-404 chr7 51729429 51729639 + 2 NA Intergenic Intergenic -336278 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 342-318 chr3 70704791 70704980 + 2 NA Intergenic L1ME3G|LINE|L1 360039 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 370-132 chr13 108671239 108671445 + 2 NA intron (NM_015011, intron 2 of 34) intron (NM_015011, intron 2 of 34) 41731 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 324-81 chr11 21684521 21684723 + 2 NA Intergenic Intergenic -508463 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 460-102 chr16 78279000 78279393 + 2 NA TTS (NR_120436) TTS (NR_120436) 179542 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 396-188 chr20 9575902 9576151 + 2 NA intron (NM_020341, intron 5 of 10) MIRb|SINE|MIR -61028 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 403-123 chr16 64828607 64828902 + 2 NA Intergenic Intergenic 293309 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 254-278 chr4 84611159 84611400 + 2 NA intron (NM_001263, intron 3 of 12) intron (NM_001263, intron 3 of 12) 28152 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 392-182 chr21 23302804 23303152 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 81857 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 433-148 chr20 1098970 1099256 + 2 NA Intergenic L1MC1|LINE|L1 -14116 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 277-31 chr1 221774383 221774646 + 2 NA Intergenic Intergenic -32338 NR_111940 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 138-51 chr3 38287384 38287479 + 2 NA intron (NM_001320033, intron 1 of 10) L1ME3F|LINE|L1 5137 NM_001320033 9389 Hs.165559 NM_004803 ENSG00000144671 SLC22A14 OCTL2|OCTL4|ORCTL4 solute carrier family 22 member 14 protein-coding 562-90 chr19 30129701 30130077 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 187650 NR_045557 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 537-185 chr5 12879686 12880031 + 2 NA intron (NR_147005, intron 4 of 4) L1M3|LINE|L1 153028 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 350-350 chr4 64246809 64247099 + 2 NA Intergenic Intergenic 162496 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 1173-12 chr5 13633447 13634415 + 2 NA Intergenic Intergenic 310549 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 306-489 chr8 20920471 20920735 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -33030 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 329-443 chr5 13068627 13068791 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -35823 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 325-413 chr4 148723062 148723247 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 219224 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 263-408 chr8 20057971 20058125 + 2 NA Intergenic Intergenic 118795 NM_000237 4023 Hs.180878 NM_000237 ENSG00000175445 LPL HDLCQ11|LIPD lipoprotein lipase protein-coding 411-246 chr6 1267491 1267835 + 2 NA Intergenic Intergenic -44435 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 216-166 chr2 49715580 49715759 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 258534 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 457-132 chr2 228289727 228290108 + 2 NA Intergenic Intergenic -108230 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 291-218 chr2 75102333 75102562 + 2 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) 11635 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 516-36 chr11 85410994 85411371 + 2 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 216088 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 283-169 chr16 76161025 76161218 + 2 NA Intergenic Intergenic -116280 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 273-112 chr12 116308761 116308945 + 2 NA Intergenic Intergenic -31667 NM_015335 23389 Hs.603766 NM_015335 ENSG00000123066 MED13L MRFACD|PROSIT240|THRAP2|TRAP240L mediator complex subunit 13L protein-coding 375-95 chr12 33834827 33835167 + 2 NA Intergenic Intergenic -187499 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 377-357 chr7 3120550 3120792 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 37902 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 386-335 chr7 120241431 120241711 + 2 NA Intergenic Intergenic -31604 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 283-237 chr2 107343287 107343466 + 2 NA intron (NR_049853, intron 1 of 3) intron (NR_049853, intron 1 of 3) 6149 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 344-287 chr21 27715659 27715926 + 2 NA Intergenic Intergenic -6587 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 177-152 chr7 78080134 78080276 + 2 NA intron (NM_001301128, intron 19 of 20) intron (NM_001301128, intron 19 of 20) 240075 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 216-74 chr12 33746418 33746588 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -275993 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 316-545 chr8 72510379 72510651 + 2 NA Intergenic Intergenic -26710 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 217-364 chr8 85501033 85501183 + 2 NA Intergenic Intergenic -36193 NR_121630 100996348 Hs.606624 NR_121630 ENSG00000253549 CA3-AS1 - CA3 antisense RNA 1 ncRNA 264-273 chr3 73332113 73332329 + 2 NA Intergenic Intergenic 101774 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 660-116 chr9 25976000 25976386 + 2 NA Intergenic Intergenic -90482 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 335-383 chr4 58846103 58846344 + 2 NA Intergenic Intergenic -138059 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 301-72 chr11 80741871 80742080 + 2 NA Intergenic Intergenic 20828 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 411-88 chr14 52972233 52972498 + 2 NA Intergenic L1MA2|LINE|L1 -21268 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 535-30 chr10 85172832 85173235 + 2 NA Intergenic Intergenic 25872 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 323-539 chr8 68631759 68631957 + 2 NA intron (NR_146186, intron 7 of 12) THE1D|LTR|ERVL-MaLR -300367 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 342-426 chr5 131756649 131756907 + 2 NA intron (NM_133372, intron 1 of 17) intron (NM_133372, intron 1 of 17) 40239 NM_001008738 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 404-153 chr2 18205646 18206000 + 2 NA Intergenic L1MC1|LINE|L1 327156 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 242-6 chr1 66748889 66749108 + 2 NA 3' UTR (NM_001350217, exon 25 of 25) 3' UTR (NM_001350217, exon 25 of 25) -3461 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 362-357 chr5 120026714 120027056 + 2 NA Intergenic L1PA15|LINE|L1 397326 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 315-128 chr14 45934726 45934896 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -129348 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 247-140 chr15 101458279 101458518 + 2 NA intron (NM_138325, intron 1 of 13) intron (NM_138325, intron 1 of 13) 31309 NM_002570 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 390-170 chr2 6682773 6683008 + 2 NA Intergenic L1PBa|LINE|L1 -32371 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 333-145 chr14 49546591 49546917 + 2 NA Intergenic Intergenic 39626 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 217-252 chr4 53070736 53070946 + 2 NA intron (NM_152540, intron 5 of 8) Charlie24|DNA|hAT-Charlie 208524 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 245-371 chr9 84492110 84492302 + 2 NA Intergenic Intergenic -123479 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 389-213 chr21 29911376 29911724 + 2 NA intron (NM_000830, intron 1 of 16) MLT1A|LTR|ERVL-MaLR 28446 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 207-126 chr2 17183186 17183386 + 2 NA Intergenic L1MA9|LINE|L1 335154 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 441-102 chr18 63272206 63272600 + 2 NA intron (NM_000633, intron 2 of 2) intron (NM_000633, intron 2 of 2) 46977 NM_000657 596 Hs.150749 NM_000633 ENSG00000171791 BCL2 Bcl-2|PPP1R50 BCL2 apoptosis regulator protein-coding 214-145 chr19 28785921 28786078 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -58305 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 713-30 chr17 70249125 70249626 + 2 NA Intergenic AluJr4|SINE|Alu 79840 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 319-196 chr18 534317 534563 + 2 NA Intergenic Intergenic -19146 NR_136505 105376854 NR_136505 ENSG00000264265 LINC01925 - long intergenic non-protein coding RNA 1925 ncRNA 582-129 chr5 126205065 126205481 + 2 NA Intergenic L1PB1|LINE|L1 25696 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 332-423 chr5 102058239 102058506 + 2 NA Intergenic Intergenic 237912 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 343-73 chr11 29286679 29286919 + 2 NA Intergenic Intergenic -307614 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 282-244 chr2 201117557 201117704 + 2 NA promoter-TSS (NR_147255) promoter-TSS (NR_147255) -861 NM_001351591 8837 Hs.390736 NM_003879 ENSG00000003402 CFLAR CASH|CASP8AP1|CLARP|Casper|FLAME|FLAME-1|FLAME1|FLIP|I-FLICE|MRIT|c-FLIP|c-FLIPL|c-FLIPR|c-FLIPS|cFLIP CASP8 and FADD like apoptosis regulator protein-coding 659-90 chr5 68091027 68091526 + 2 NA Intergenic Intergenic -98600 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 270-400 chr8 115919306 115919525 + 2 NA Intergenic MER20|DNA|hAT-Charlie -250440 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 424-181 chr3 175715768 175716134 + 2 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 60382 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 577-160 chr5 166137844 166138227 + 2 NA Intergenic L1M2|LINE|L1 788335 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 372-508 chr9 8069635 8069821 + 2 NA Intergenic L1PA16|LINE|L1 -269950 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 252-58 chr11 16700877 16701091 + 2 NA intron (NM_001367872, intron 2 of 16) intron (NM_001367872, intron 2 of 16) 37493 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 318-569 chr9 27662361 27662669 + 2 NA Intergenic Intergenic -88649 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 257-310 chr5 3313658 3313842 + 2 NA Intergenic L1ME4a|LINE|L1 135915 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 347-75 chr11 70860680 70860921 + 2 NA intron (NM_012309, intron 10 of 24) AluJb|SINE|Alu -1990 NR_073536 220070 Hs.326766 NM_145308 ENSG00000171671 SHANK2-AS3 C11orf76 SHANK2 antisense RNA 3 ncRNA 187-95 chr20 40234367 40234520 + 2 NA Intergenic Intergenic 229982 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 295-4 chr1 40005407 40005691 + 2 NA Intergenic Intergenic -34516 NM_001350480 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 325-175 chr14 92294174 92294371 + 2 NA Intergenic AluSx1|SINE|Alu -28309 NM_153648 123041 Hs.385530 NM_153646 ENSG00000140090 SLC24A4 AI2A5|NCKX4|SHEP6|SLC24A2 solute carrier family 24 member 4 protein-coding 334-6 chr1 41761692 41761879 + 2 NA intron (NM_024503, intron 1 of 8) (GTGCAT)n|Simple_repeat|Simple_repeat 157137 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 539-3 chr1 43002776 43003142 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 43910 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 394-342 chr9 86573188 86573476 + 2 NA Intergenic L1MEd|LINE|L1 -218922 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 216-302 chr6 52609595 52609788 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 32393 NR_103447 401264 Hs.544586 NR_103446 ENSG00000225791 TRAM2-AS1 - TRAM2 antisense RNA 1 (head to head) ncRNA 250-133 chr15 47185395 47185629 + 2 NA intron (NM_001198999, intron 1 of 19) intron (NM_001198999, intron 1 of 19) 1423 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 234-18 chr1 147750002 147750209 + 2 NA Intergenic Intergenic 10497 NM_181703 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 297-333 chr4 66237759 66237962 + 2 NA Intergenic L2a|LINE|L2 -38964 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 210-191 chr4 52902910 52903050 + 2 NA intron (NM_152540, intron 7 of 8) intron (NM_152540, intron 7 of 8) 40663 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 503-217 chr4 79132242 79132679 + 2 NA intron (NR_038342, intron 3 of 5) L1M4b|LINE|L1 160712 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 648-53 chr16 63886434 63886930 + 2 NA Intergenic Intergenic 1235381 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 325-237 chr18 31490237 31490473 + 2 NA Intergenic Intergenic -7822 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 420-254 chr6 92784527 92784837 + 2 NA Intergenic Intergenic 634877 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 237-347 chr7 24491490 24491655 + 2 NA Intergenic Intergenic -81880 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 238-3 chr1 14690524 14690681 + 2 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) 91885 NM_015209 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 328-395 chr4 41714181 41714417 + 2 NA Intergenic Intergenic 34671 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 549-205 chr8 39073219 39073721 + 2 NA intron (NR_027638, intron 15 of 20) intron (NR_027638, intron 15 of 20) -34059 NM_001313994 203102 Hs.521545 NM_145004 ENSG00000197140 ADAM32 - ADAM metallopeptidase domain 32 protein-coding 188-176 chr5 176804736 176804907 + 2 NA Intergenic AluJr|SINE|Alu -5738 NM_133369 90249 Hs.33191 NM_133369 ENSG00000113763 UNC5A UNC5H1 unc-5 netrin receptor A protein-coding 278-199 chr2 22606846 22607034 + 2 NA Intergenic Intergenic 70461 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 277-166 chr18 62391929 62392175 + 2 NA TTS (NM_001278268) TTS (NM_001278268) 66742 NM_001278268 8792 Hs.204044 NM_003839 ENSG00000141655 TNFRSF11A CD265|FEO|LOH18CR1|ODFR|OFE|OPTB7|OSTS|PDB2|RANK|TRANCER TNF receptor superfamily member 11a protein-coding 314-617 chr9 107090361 107090541 + 2 NA intron (NR_126029, intron 3 of 4) L1MD1|LINE|L1 12537 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 125-42 chr4 12963611 12963681 + 2 NA Intergenic MIRc|SINE|MIR 520694 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 341-389 chr4 100576695 100577020 + 2 NA Intergenic L2|LINE|L2 -58835 NM_016242 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 382-180 chr2 35354216 35354545 + 2 NA Intergenic Intergenic -117025 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 379-239 chr4 73974228 73974430 + 2 NA Intergenic L1PREC2|LINE|L1 7698 NM_002619 5196 Hs.81564 NM_002619 ENSG00000163737 PF4 CXCL4|PF-4|SCYB4 platelet factor 4 protein-coding 480-285 chr8 29436581 29436913 + 2 NA Intergenic AluJb|SINE|Alu -86063 NM_001394 1846 Hs.417962 NM_001394 ENSG00000120875 DUSP4 HVH2|MKP-2|MKP2|TYP dual specificity phosphatase 4 protein-coding 530-118 chr2 34450985 34451364 + 2 NA Intergenic L1MA2|LINE|L1 -226383 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 358-285 chr3 1321139 1321428 + 2 NA intron (NM_001349359, intron 6 of 20) L2a|LINE|L2 228259 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 243-192 chr2 19632966 19633139 + 2 NA Intergenic Intergenic -235802 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 320-190 chr16 56181657 56181906 + 2 NA intron (NR_027078, intron 2 of 4) L1MB3|LINE|L1 9313 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 761-30 chr2 163886688 163887428 + 2 NA Intergenic Intergenic -151050 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 176-11 chr10 64694300 64694457 + 2 NA Intergenic Intergenic -131150 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 437-219 chr5 36978555 36978875 + 2 NA intron (NM_015384, intron 9 of 45) L1PA17|LINE|L1 101946 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 233-66 chr11 103398947 103399127 + 2 NA intron (NM_001377, intron 83 of 88) intron (NM_001377, intron 83 of 88) 289611 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 316-490 chr6 122701772 122701963 + 2 NA intron (NM_001270394, intron 6 of 7) LTR53|LTR|ERVL -47334 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 349-434 chr5 164784466 164784810 + 2 NA Intergenic Intergenic 314359 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 367-310 chr4 8825203 8825397 + 2 NA Intergenic L1MC1|LINE|L1 46539 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 500-182 chr3 52760701 52760973 + 2 NA exon (NM_001348414, exon 6 of 16) exon (NM_001348414, exon 6 of 16) 10103 NM_001348413 6787 Hs.631921 NM_003157 ENSG00000114904 NEK4 NRK2|STK2|pp12301 NIMA related kinase 4 protein-coding 220-105 chr14 32596627 32596804 + 2 NA intron (NM_004274, intron 5 of 13) intron (NM_004274, intron 5 of 13) 267417 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 273-231 chr2 119502421 119502620 + 2 NA intron (NM_002980, intron 1 of 12) L1PA4|LINE|L1 21932 NM_002980 6344 Hs.42091 NM_002980 ENSG00000080293 SCTR SR secretin receptor protein-coding 195-7 chr1 98082869 98082995 + 2 NA Intergenic L1M5|LINE|L1 -33239 NR_046105 400765 Hs.451802 NM_001001688 ENSG00000225206 MIR137HG - MIR137 host gene ncRNA 147-18 chr14 23856737 23856827 + 2 NA Intergenic MER65-int|LTR|ERV1 -96988 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 207-189 chr3 81009026 81009156 + 2 NA intron (NR_132411, intron 1 of 1) PRIMA41-int|LTR|ERV1 15223 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 262-321 chr4 92251257 92251446 + 2 NA Intergenic L1PA10|LINE|L1 25951 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 261-240 chr3 74207979 74208185 + 2 NA Intergenic Intergenic 313058 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 346-518 chr9 32825563 32825894 + 2 NA Intergenic L2|LINE|L2 42188 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 382-137 chr16 85830171 85830457 + 2 NA Intergenic Intergenic 30619 NM_001318797 1327 Hs.433419 NM_001861 ENSG00000131143 COX4I1 COX IV-1|COX4|COX4-1|COXIV|COXIV-1 cytochrome c oxidase subunit 4I1 protein-coding 329-471 chr5 114798175 114798489 + 2 NA Intergenic Intergenic -24919 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 377-49 chr10 76272692 76272978 + 2 NA intron (NM_001305581, intron 5 of 6) THE1D|LTR|ERVL-MaLR 490074 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 291-38 chr10 11155396 11155596 + 2 NA intron (NM_001326334, intron 2 of 13) intron (NM_001326334, intron 2 of 13) -9385 NM_001326349 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 354-315 chr4 14992941 14993131 + 2 NA intron (NR_038857, intron 4 of 7) intron (NR_038857, intron 4 of 7) 9009 NR_038857 441009 Hs.535004 NR_038857 ENSG00000247624 CPEB2-DT CPEB2-AS1 CPEB2 divergent transcript ncRNA 478-238 chr5 64932946 64933336 + 2 NA intron (NM_005869, intron 11 of 13) MER5A|DNA|hAT-Charlie 164211 NM_001364478 10283 Hs.371372 NM_005869 ENSG00000153015 CWC27 NY-CO-10|RPSKA|SDCCAG-10|SDCCAG10 CWC27 spliceosome associated cyclophilin protein-coding 391-328 chr7 53272691 53272916 + 2 NA Intergenic Intergenic 237170 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 260-385 chr6 123279237 123279429 + 2 NA intron (NM_006073, intron 24 of 40) MER58A|DNA|hAT-Charlie -160271 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 197-200 chr8 56306527 56306652 + 2 NA intron (NM_001318050, intron 4 of 5) intron (NM_001318050, intron 4 of 5) 14187 NM_138969 195814 Hs.170673 NM_138969 ENSG00000170786 SDR16C5 EPHD-2|RDH#2|RDH-E2|RDHE2|retSDR2 short chain dehydrogenase/reductase family 16C member 5 protein-coding 168-93 chr5 150900609 150900765 + 2 NA 3' UTR (NM_001346557, exon 4 of 4) 3' UTR (NM_001346557, exon 4 of 4) 4296 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 334-479 chr6 156142789 156142970 + 2 NA Intergenic L1ME1|LINE|L1 196082 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 295-120 chr13 112013503 112013696 + 2 NA intron (NR_120392, intron 1 of 3) Tigger7|DNA|TcMar-Tigger 41289 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 322-112 chr12 8985413 8985702 + 2 NA intron (NR_137427, intron 1 of 2) MER21A|LTR|ERVL -3989 NM_001329099 10219 Hs.558446 NM_005810 ENSG00000139187 KLRG1 2F1|CLEC15A|MAFA|MAFA-2F1|MAFA-L|MAFA-LIKE killer cell lectin like receptor G1 protein-coding 234-26 chr1 237476574 237476743 + 2 NA intron (NM_001035, intron 17 of 104) intron (NM_001035, intron 17 of 104) 5539 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 587-93 chr21 22650216 22650599 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -428877 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 575-185 chr7 68237844 68238191 + 2 NA Intergenic MIR|SINE|MIR 217764 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 391-65 chr11 103571407 103571730 + 2 NA Intergenic LTR81|LTR|Gypsy -278338 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 552-69 chr15 27255022 27255507 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -93945 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 318-136 chr12 23253083 23253301 + 2 NA Intergenic Intergenic 77556 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 225-169 chr2 173878655 173878819 + 2 NA Intergenic Intergenic 85143 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 180-146 chr5 162723810 162723945 + 2 NA Intergenic MER89|LTR|ERV1 656235 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 454-18 chr10 9616709 9617033 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -321278 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 236-238 chr3 130327740 130327932 + 2 NA Intergenic Intergenic -17680 NM_153264 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 582-146 chr8 46521807 46522311 + 2 NA Intergenic ALR/Alpha|Satellite|centr 95584 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 303-73 chr11 92817402 92817658 + 2 NA intron (NM_001008781, intron 12 of 24) intron (NM_001008781, intron 12 of 24) 98098 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 409-61 chr13 19123100 19123425 + 2 NA Intergenic L1M1|LINE|L1 -4979 NR_146902 107984132 Hs.614937 NR_146902 LOC107984132 - uncharacterized LOC107984132 ncRNA 293-170 chr19 27364547 27364709 + 2 NA Intergenic ALR/Alpha|Satellite|centr -428803 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 246-43 chr10 49066904 49067094 + 2 NA intron (NM_001031746, intron 4 of 7) Charlie2b|DNA|hAT-Charlie 48523 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 366-115 chr12 130655530 130655777 + 2 NA intron (NM_001351226, intron 1 of 21) intron (NM_001351226, intron 1 of 21) -21733 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 215-313 chr8 89106113 89106227 + 2 NA Intergenic Intergenic 651541 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 288-377 chr6 122374564 122374837 + 2 NA Intergenic Intergenic -24851 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 183-70 chr2 28254340 28254508 + 2 NA intron (NM_199193, intron 11 of 13) AluSx|SINE|Alu -47463 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 400-272 chr5 16246510 16246714 + 2 NA Intergenic Intergenic 66371 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 381-72 chr11 55034379 55034677 + 2 NA Intergenic ALR/Alpha|Satellite|centr -227627 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 686-79 chr8 18304495 18304918 + 2 NA Intergenic Intergenic 83038 NM_001160174 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 153-12 chr1 246345014 246345130 + 2 NA intron (NM_022743, intron 2 of 11) L1ME2|LINE|L1 72340 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 353-461 chr6 124959573 124959765 + 2 NA intron (NR_026876, intron 1 of 6) L1MA4A|LINE|L1 -2876 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 266-50 chr10 106963723 106963956 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 200867 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 485-74 chr14 46305412 46305883 + 2 NA intron (NR_102702, intron 3 of 3) MER58A|DNA|hAT-Charlie -165712 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 390-361 chr7 87733760 87734134 + 2 NA intron (NM_138290, intron 5 of 11) L1MB8|LINE|L1 -20624 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 284-156 chr17 30937898 30938083 + 2 NA intron (NR_144488, intron 4 of 9) L2a|LINE|L2 16045 NM_018404 55803 Hs.514063 NM_018404 ENSG00000184060 ADAP2 CENTA2|HSA272195|cent-b ArfGAP with dual PH domains 2 protein-coding 237-194 chr2 152915043 152915212 + 2 NA Intergenic L1MC1|LINE|L1 196490 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 505-207 chr3 194045968 194046318 + 2 NA intron (NR_136179, intron 1 of 2) intron (NR_136179, intron 1 of 2) 23386 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 404-82 chr12 74684144 74684467 + 2 NA Intergenic Intergenic 146470 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 354-451 chr8 33288157 33288437 + 2 NA Intergenic L1ME4b|LINE|L1 184849 NM_032664 84750 Hs.458713 NM_032664 ENSG00000172728 FUT10 FUCTX fucosyltransferase 10 protein-coding 241-47 chr10 90508039 90508189 + 2 NA intron (NR_110657, intron 2 of 6) L1ME2|LINE|L1 32691 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 405-151 chr2 116092306 116092529 + 2 NA Intergenic L1MA4A|LINE|L1 748602 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 319-247 chr2 81252430 81252742 + 2 NA Intergenic AluSp|SINE|Alu 214360 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 340-73 chr11 38571581 38571841 + 2 NA Intergenic L1MC4a|LINE|L1 74645 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 237-221 chr22 29908896 29909127 + 2 NA intron (NM_153051, intron 1 of 18) AluJb|SINE|Alu 25837 NM_153051 8897 Hs.474536 NM_021090 ENSG00000100330 MTMR3 FYVE-DSP1|ZFYVE10 myotubularin related protein 3 protein-coding 336-46 chr1 231041571 231041775 + 2 NA Intergenic Intergenic -1419 NM_198552 375061 Hs.38516 NM_198552 ENSG00000182118 FAM89A C1orf153 family with sequence similarity 89 member A protein-coding 520-226 chr5 15289775 15290137 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -23396 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 334-225 chr18 36597203 36597386 + 2 NA intron (NM_001281740, intron 7 of 28) intron (NM_001281740, intron 7 of 28) 66124 NR_132982 105372071 NR_132982 LOC105372071 - uncharacterized LOC105372071 ncRNA 605-98 chr6 50869512 50870004 + 2 NA Intergenic Intergenic 50887 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 300-368 chr5 117099726 117099937 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -315681 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 241-349 chr6 162628920 162629111 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -98117 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 440-203 chr5 101073068 101073453 + 2 NA Intergenic MER3|DNA|hAT-Charlie -169978 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 469-41 chr10 95379942 95380229 + 2 NA intron (NM_001034955, intron 16 of 30) intron (NM_001034955, intron 16 of 30) 61095 NM_006434 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 267-435 chr8 131573251 131573445 + 2 NA Intergenic L1PB1|LINE|L1 -330745 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 272-59 chr10 89661302 89661452 + 2 NA Intergenic L1MC5|LINE|L1 -15805 NM_148977 53354 Hs.163555 NM_138316 ENSG00000152782 PANK1 PANK pantothenate kinase 1 protein-coding 272-93 chr12 40052350 40052549 + 2 NA intron (NM_052885, intron 1 of 9) intron (NM_052885, intron 1 of 9) 53632 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 330-335 chr22 26494460 26494746 + 2 NA TTS (NM_001013694) TTS (NM_001013694) 10726 NM_001013694 402055 Hs.709914 NM_001013694 ENSG00000100104 SRRD HC/HCC|SRR1L SRR1 domain containing protein-coding 150-38 chr14 72012346 72012464 + 2 NA intron (NM_001370288, intron 2 of 16) L1ME4a|LINE|L1 78878 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 181-96 chr3 89819640 89819812 + 2 NA Intergenic L1PA15|LINE|L1 712105 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 660-54 chr20 58492154 58492610 + 2 NA intron (NR_130908, intron 1 of 1) L1ME3F|LINE|L1 22556 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 277-73 chr11 54749673 54749827 + 2 NA Intergenic ALR/Alpha|Satellite|centr 42918 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 199-194 chr5 12314315 12314485 + 2 NA Intergenic Intergenic -260457 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 497-89 chr16 80914918 80915264 + 2 NA Intergenic Intergenic -22495 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 359-142 chr14 48069641 48069968 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -274790 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 223-218 chr3 97818732 97818927 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -3182 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 264-395 chr7 123716830 123717092 + 2 NA intron (NM_003941, intron 1 of 10) intron (NM_003941, intron 1 of 10) 32042 NM_003941 8976 Hs.143728 NM_003941 ENSG00000106299 WASL N-WASP|NWASP|WASPB WASP like actin nucleation promoting factor protein-coding 484-5 chr1 51021288 51021679 + 2 NA Intergenic L3|LINE|CR1 -38354 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 323-10 chr1 67238916 67239108 + 2 NA intron (NM_144701, intron 8 of 10) L2a|LINE|L2 -68352 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 268-247 chr3 101027100 101027274 + 2 NA Intergenic L1PBa|LINE|L1 -33697 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 703-51 chr2 147765902 147766299 + 2 NA Intergenic Intergenic -78417 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 247-441 chrX 39616260 39616446 + 2 NA Intergenic Intergenic -44863 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 197-150 chr4 43571486 43571591 + 2 NA Intergenic Intergenic -78995 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 498-203 chr4 187378876 187379328 + 2 NA intron (NR_038931, intron 1 of 4) HAL1b|LINE|L1 8454 NR_149103 105377602 Hs.582096 NR_149103 ENSG00000250042 LINC02514 - long intergenic non-protein coding RNA 2514 ncRNA 112-18 chr17_KI270729v1_random 20264 20325 + 2 NA NA (GAATG)n|Satellite|Satellite NA NA 394-280 chr5 137584239 137584583 + 2 NA Intergenic Intergenic 63238 NR_030588 100126343 NR_030588 ENSG00000216009 MIR874 MIRN874|hsa-mir-874|mir-874 microRNA 874 ncRNA 628-119 chr7 51498949 51499510 + 2 NA Intergenic HAL1|LINE|L1 -105973 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 267-153 chr18 12451693 12451901 + 2 NA intron (NM_020148, intron 15 of 15) intron (NM_020148, intron 15 of 15) 19023 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 187-60 chr16 24310687 24310826 + 2 NA intron (NM_006539, intron 1 of 3) MIR|SINE|MIR 55203 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 205-11 chr1 51424411 51424577 + 2 NA intron (NM_001981, intron 12 of 24) intron (NM_001981, intron 12 of 24) -2399 NM_001159969 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 405-114 chr18 4244890 4245277 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -19519 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 477-190 chr3 4992152 4992447 + 2 NA Intergenic L1ME4b|LINE|L1 -12338 NR_125916 100507582 Hs.434505 NR_037903 ENSG00000235831 BHLHE40-AS1 - BHLHE40 antisense RNA 1 ncRNA 409-34 chr10 111997566 111997825 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 186070 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 467-115 chr18 12838241 12838640 + 2 NA intron (NM_080423, intron 2 of 8) intron (NM_080423, intron 2 of 8) 2522 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 433-88 chr15 25490447 25490719 + 2 NA Intergenic L1MB7|LINE|L1 -51527 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 202-12 chr1 175980120 175980264 + 2 NA intron (NM_022457, intron 18 of 19) MIR|SINE|MIR -11652 NR_002998 677679 NR_002998 ENSG00000252906 SCARNA3 HBI-100 small Cajal body-specific RNA 3 ncRNA 335-485 chr7 8316538 8316781 + 2 NA intron (NR_125740, intron 3 of 5) L1PBa|LINE|L1 -54047 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 288-189 chr2 61399975 61400145 + 2 NA intron (NM_014709, intron 3 of 79) intron (NM_014709, intron 3 of 79) 17317 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 323-421 chr5 89519114 89519310 + 2 NA Intergenic L1MC5|LINE|L1 497508 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 495-250 chr8 69236072 69236540 + 2 NA Intergenic Intergenic -132116 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 199-11 chr1 119127948 119128110 + 2 NA intron (NM_015836, intron 1 of 5) intron (NM_015836, intron 1 of 5) -12367 NR_125977 101929147 Hs.697821 NR_125974 ENSG00000231365 WARS2-AS1 - WARS2 antisense RNA 1 ncRNA 275-228 chr20 57512167 57512320 + 2 NA intron (NM_001269048, intron 4 of 5) Charlie1a|DNA|hAT-Charlie 12624 NR_072975 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 248-48 chr10 91603456 91603660 + 2 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 7902 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 174-93 chr3 113783743 113783908 + 2 NA intron (NM_001690, intron 3 of 14) MER119|DNA|hAT-Charlie 36790 NM_001690 523 Hs.477155 NM_001690 ENSG00000114573 ATP6V1A ARCL2D|ATP6A1|ATP6V1A1|HO68|IECEE3|VA68|VPP2|Vma1 ATPase H+ transporting V1 subunit A protein-coding 292-257 chr20 58868876 58869074 + 2 NA intron (NR_126334, intron 3 of 4) intron (NR_126334, intron 3 of 4) 15994 NM_001309883 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 379-259 chr5 19316259 19316463 + 2 NA Intergenic Intergenic 569911 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 350-159 chr16 26447848 26448188 + 2 NA Intergenic Intergenic 422781 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 224-190 chr3 16001114 16001323 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 127447 NR_030289 693148 NR_030289 ENSG00000207815 MIR563 MIRN563|hsa-mir-563 microRNA 563 ncRNA 320-95 chr11 94895424 94895595 + 2 NA Intergenic LTR40c|LTR|ERVL 78047 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 316-427 chr5 20345560 20345841 + 2 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 40149 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 214-359 chrX 76728019 76728172 + 2 NA intron (NR_110400, intron 1 of 3) L1PREC2|LINE|L1 191265 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 335-198 chr17 51868875 51869080 + 2 NA intron (NM_001082533, intron 4 of 9) intron (NM_001082533, intron 4 of 9) 289737 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 269-277 chr4 67939248 67939442 + 2 NA intron (NM_001114387, intron 3 of 9) L1PA16|LINE|L1 24148 NM_001114387 339967 Hs.450110 NM_182606 ENSG00000187054 TMPRSS11A ECRG1 transmembrane serine protease 11A protein-coding 442-145 chr2 161530785 161531038 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -23009 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 116-22 chr20 54485956 54486026 + 2 NA intron (NM_018431, intron 1 of 7) L1MD1|LINE|L1 10398 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 352-497 chr7 49564236 49564423 + 2 NA Intergenic L1PA16|LINE|L1 -209309 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 215-204 chr3 127827642 127827798 + 2 NA Intergenic L1MD2|LINE|L1 -4470 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 478-250 chr6 54442346 54442619 + 2 NA Intergenic L1MA1|LINE|L1 134041 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 266-21 chr1 187966636 187966869 + 2 NA Intergenic Intergenic 523124 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 169-37 chr14 51047585 51047697 + 2 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 48063 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 403-3 chr1 45829281 45829557 + 2 NA intron (NM_001324320, intron 2 of 29) intron (NM_001324320, intron 2 of 29) 25806 NM_001319245 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 238-327 chr6 74296048 74296203 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 226674 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 204-269 chr7 37768114 37768254 + 2 NA Intergenic Intergenic -80413 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 566-77 chr19 28898791 28899197 + 2 NA Intergenic Intergenic -66137 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 337-276 chr2 145917228 145917434 + 2 NA Intergenic L1PA8|LINE|L1 -669726 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 579-72 chr2 125470814 125471248 + 2 NA Intergenic Intergenic 646954 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 244-41 chr10 119967146 119967339 + 2 NA Intergenic LTR26|LTR|ERV1 8729 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 385-403 chr9 30968676 30969023 + 2 NA Intergenic Intergenic 412641 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 426-100 chr16 68096727 68097053 + 2 NA intron (NM_004555, intron 1 of 10) L2c|LINE|L2 11520 NM_173165 4775 Hs.436585 NM_004555 ENSG00000072736 NFATC3 NF-AT4c|NFAT4|NFATX nuclear factor of activated T cells 3 protein-coding 261-265 chr3 192593919 192594120 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 78997 NR_046598 100873987 Hs.628012 NR_046598 ENSG00000230126 FGF12-AS2 - FGF12 antisense RNA 2 ncRNA 318-431 chr5 17047328 17047504 + 2 NA Intergenic Intergenic 108576 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 251-275 chr4 135096763 135096920 + 2 NA Intergenic Intergenic 26718 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 251-155 chr2 12148714 12148912 + 2 NA intron (NR_110196, intron 2 of 5) intron (NR_110196, intron 2 of 5) -50317 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 152-99 chr9 82929065 82929194 + 2 NA Intergenic Intergenic 134013 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 296-186 chr17 62857861 62858048 + 2 NA Intergenic Intergenic 49452 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 495-125 chr2 202947643 202948101 + 2 NA intron (NR_148034, intron 4 of 11) L1PREC2|LINE|L1 35597 NM_001282910 79800 Hs.444982 NM_024744 ENSG00000138380 CARF ALS2CR8|NYD-SP24 calcium responsive transcription factor protein-coding 240-185 chr18 2335119 2335322 + 2 NA Intergenic Intergenic 236285 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 173-45 chr16 47052785 47052913 + 2 NA Intergenic Intergenic -79175 NM_005880 10294 Hs.368078 NM_005880 ENSG00000069345 DNAJA2 CPR3|DJ3|DJA2|DNAJ|DNJ3|HIRIP4|PRO3015|RDJ2 DnaJ heat shock protein family (Hsp40) member A2 protein-coding 380-309 chr5 88426309 88426578 + 2 NA intron (NR_105020, intron 2 of 2) intron (NR_105020, intron 2 of 2) 12647 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 263-449 chr9 71884267 71884478 + 2 NA intron (NM_001025780, intron 1 of 3) L1ME5|LINE|L1 26873 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 408-177 chr2 212414340 212414626 + 2 NA intron (NM_001042599, intron 1 of 26) Eulor4|Unknown|Unknown 11877 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 172-65 chr2 156459882 156460025 + 2 NA intron (NM_000408, intron 1 of 16) intron (NM_000408, intron 1 of 16) 23574 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 254-239 chr3 34462620 34462794 + 2 NA Intergenic Intergenic 664077 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 159-83 chr7 9114488 9114599 + 2 NA Intergenic Intergenic -519727 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 191-221 chr9 9198080 9198216 + 2 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 340130 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 398-43 chr10 72753165 72753535 + 2 NA intron (NR_073062, intron 3 of 9) MIRc|SINE|MIR 32321 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 180-133 chr5 35118289 35118426 + 2 NA promoter-TSS (NM_001204315) promoter-TSS (NM_001204315) -235 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 319-135 chr14 44444615 44444888 + 2 NA Intergenic L1ME1|LINE|L1 62532 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 189-21 chr10 75880407 75880541 + 2 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 97713 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 662-70 chr4 87599204 87599760 + 2 NA Intergenic L1PBa|LINE|L1 -9047 NM_014208 1834 Hs.678914 NM_014208 ENSG00000152591 DSPP DFNA39|DGI1|DMP3|DPP|DSP dentin sialophosphoprotein protein-coding 346-368 chr4 157062612 157062880 + 2 NA Intergenic Intergenic -13379 NM_001166061 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 245-335 chr7 121805267 121805466 + 2 NA Intergenic L1MA9|LINE|L1 -67795 NM_001206838 5803 Hs.489824 NM_002851 ENSG00000106278 PTPRZ1 HPTPZ|HPTPzeta|PTP-ZETA|PTP18|PTPRZ|PTPZ|R-PTP-zeta-2|RPTPB|RPTPbeta|phosphacan protein tyrosine phosphatase receptor type Z1 protein-coding 435-10 chr1 71273869 71274186 + 2 NA Intergenic MamGypLTR1a|LTR|Gypsy 192703 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 338-166 chr14 66906995 66907257 + 2 NA intron (NM_001024218, intron 5 of 21) L1MC3|LINE|L1 -282314 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 339-451 chr5 81379757 81379974 + 2 NA intron (NM_130767, intron 2 of 14) FRAM|SINE|Alu 14269 NM_130767 134526 Hs.591756 NM_130767 ENSG00000172497 ACOT12 CACH-1|Cach|STARD15|THEAL acyl-CoA thioesterase 12 protein-coding 494-263 chr7 22220039 22220388 + 2 NA intron (NM_012294, intron 8 of 25) intron (NM_012294, intron 8 of 25) -25403 NM_001367602 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 172-104 chr5 106108979 106109094 + 2 NA Intergenic L1MD2|LINE|L1 901978 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 789-30 chr21 28745940 28746577 + 2 NA Intergenic MIR|SINE|MIR 139109 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 255-164 chr17 72078990 72079159 + 2 NA TTS (NR_103737) TTS (NR_103737) 6741 NR_110827 101928205 Hs.620808 NR_110827 ENSG00000226101 LINC02097 - long intergenic non-protein coding RNA 2097 ncRNA 284-32 chr10 49622876 49623082 + 2 NA intron (NM_001142929, intron 5 of 14) intron (NM_001142929, intron 5 of 14) 8942 NM_001142929 1103 Hs.302002 NM_020549 ENSG00000070748 CHAT CHOACTASE|CMS1A|CMS1A2|CMS6 choline O-acetyltransferase protein-coding 737-58 chr3 68065337 68066010 + 2 NA intron (NM_001252216, intron 2 of 4) (AT)n|Simple_repeat|Simple_repeat 61426 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 287-349 chr6 51486589 51486787 + 2 NA Intergenic Intergenic -135182 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 215-207 chr3 145175080 145175242 + 2 NA Intergenic Intergenic 894024 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 692-89 chr7 36386733 36387145 + 2 NA intron (NM_001100425, intron 1 of 6) L1ME3C|LINE|L1 -2923 NM_018685 54443 Hs.62180 NM_018685 ENSG00000011426 ANLN FSGS8|Scraps|scra anillin actin binding protein protein-coding 333-467 chr5 106542142 106542326 + 2 NA Intergenic Intergenic 468780 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 296-287 chr3 29688141 29688360 + 2 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 245906 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 544-98 chr18 78256695 78257156 + 2 NA Intergenic Intergenic -263198 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 165-125 chr7 128193377 128193500 + 2 NA Intergenic L1ME4a|LINE|L1 -14434 NR_029596 406917 NR_029596 ENSG00000207705 MIR129-1 MIR-129b|MIRN129-1|mir-129-1 microRNA 129-1 ncRNA 438-91 chr17 29894240 29894625 + 2 NA intron (NM_001282129, intron 1 of 15) MER2|DNA|TcMar-Tigger -35471 NM_001145053 374786 Hs.662411 NM_198529 ENSG00000176927 EFCAB5 - EF-hand calcium binding domain 5 protein-coding 270-181 chr2 65835815 65836015 + 2 NA Intergenic Intergenic -403316 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 277-451 chr9 135311208 135311410 + 2 NA Intergenic L1ME3|LINE|L1 -31940 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 492-67 chr12 87369981 87370440 + 2 NA Intergenic L1MC3|LINE|L1 39471 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 552-109 chr2 106726003 106726375 + 2 NA Intergenic LTR16A2|LTR|ERVL 159839 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 606-60 chr16 73643517 73643999 + 2 NA Intergenic Intergenic 256953 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 639-121 chr9 100544815 100545243 + 2 NA intron (NM_001198812, intron 5 of 9) THE1B-int|LTR|ERVL-MaLR -33050 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 189-53 chr14 52954923 52955081 + 2 NA Intergenic Intergenic -3905 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 293-427 chr8 37936494 37936700 + 2 NA intron (NM_152413, intron 6 of 8) MIR3|SINE|MIR 3527 NM_152413 137362 Hs.380740 NM_152413 ENSG00000169154 GOT1L1 - glutamic-oxaloacetic transaminase 1 like 1 protein-coding 505-189 chr3 6350438 6350781 + 2 NA Intergenic Intergenic 454840 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 287-163 chr17 61511969 61512230 + 2 NA Intergenic Intergenic 55611 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 389-152 chr19 49285840 49286125 + 2 NA Intergenic AluSg|SINE|Alu 22886 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 172-114 chr6 89158521 89158632 + 2 NA intron (NM_001010853, intron 5 of 6) intron (NM_001010853, intron 5 of 6) 12521 NM_001010853 135293 Hs.356247 NM_001010853 ENSG00000146281 PM20D2 ACY1L2 peptidase M20 domain containing 2 protein-coding 384-297 chr5 91588232 91588485 + 2 NA Intergenic L1MC1|LINE|L1 -205041 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 252-80 chr11 114850887 114851059 + 2 NA Intergenic Intergenic 172446 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 326-107 chr11 92819221 92819435 + 2 NA intron (NM_001008781, intron 12 of 24) MER5A|DNA|hAT-Charlie 96300 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 358-136 chr15 83483058 83483365 + 2 NA intron (NM_003027, intron 1 of 8) intron (NM_003027, intron 1 of 8) -7403 NM_001324187 6457 Hs.270055 NM_003027 ENSG00000140600 SH3GL3 CNSA3|EEN-B2|HsT19371|SH3D2C|SH3P13 SH3 domain containing GRB2 like 3, endophilin A3 protein-coding 241-432 chrX 38744348 38744500 + 2 NA Intergenic L1PA16|LINE|L1 -57008 NM_001098791 58526 Hs.522605 NM_021242 ENSG00000165175 MID1IP1 G12-like|MIG12|S14R|STRAIT11499|THRSPL MID1 interacting protein 1 protein-coding 498-281 chr8 124967709 124968074 + 2 NA Intergenic AluJr|SINE|Alu -5404 NM_152412 137209 Hs.175350 NM_152412 ENSG00000180938 ZNF572 - zinc finger protein 572 protein-coding 296-265 chr20 33880437 33880657 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 69199 NM_176812 128866 Hs.472471 NM_176812 ENSG00000101421 CHMP4B C20orf178|CHMP4A|CTPP3|CTRCT31|SNF7|SNF7-2|Shax1|VPS32B|Vps32-2|dJ553F4.4 charged multivesicular body protein 4B protein-coding 425-234 chr5 86917638 86917958 + 2 NA Intergenic L1ME4b|LINE|L1 170980 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 315-289 chr21 23688252 23688464 + 2 NA Intergenic Intergenic -303523 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 227-126 chr16 62589170 62589365 + 2 NA Intergenic Intergenic -552829 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 243-60 chr10 103549541 103549756 + 2 NA intron (NM_004210, intron 1 of 5) intron (NM_004210, intron 1 of 5) -32206 NR_120676 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 333-106 chr12 4258549 4258856 + 2 NA intron (NR_149145, intron 1 of 3) L1M4|LINE|L1 -15060 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 329-303 chr2 195305026 195305286 + 2 NA Intergenic Intergenic -351802 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 198-136 chr2 141090255 141090408 + 2 NA intron (NM_018557, intron 7 of 90) intron (NM_018557, intron 7 of 90) -503646 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 228-90 chr13 93102969 93103179 + 2 NA Intergenic L2|LINE|L2 57733 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 255-151 chr16 80649668 80649892 + 2 NA intron (NM_152342, intron 2 of 6) L1MA2|LINE|L1 -76972 NR_104666 101928276 Hs.149769 NR_104665 ENSG00000260737 LINC01227 - long intergenic non-protein coding RNA 1227 ncRNA 299-290 chr3 97054289 97054577 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 239839 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 378-52 chr10 33936277 33936642 + 2 NA Intergenic Intergenic -163779 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 305-41 chr1 209474163 209474449 + 2 NA Intergenic MER50|LTR|ERV1 42173 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 239-2 chr1 48974234 48974425 + 2 NA intron (NM_001323575, intron 5 of 12) LTR16B2|LTR|ERVL -197360 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 415-237 chr6 73291788 73292175 + 2 NA intron (NR_027005, intron 3 of 4) intron (NR_027005, intron 3 of 4) 18178 NM_001251874 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 369-221 chr2 175241781 175242099 + 2 NA Intergenic Intergenic -60230 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 931-32 chrUn_GL000216v2 42998 43574 + 2 NA NA (CATTC)n|Satellite|Satellite NA NA 417-92 chr15 61993631 61993928 + 2 NA intron (NM_001018088, intron 16 of 81) intron (NM_001018088, intron 16 of 81) 66668 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 229-301 chr5 66193463 66193656 + 2 NA Intergenic L1M1|LINE|L1 15887 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 130-31 chr17 70852581 70852680 + 2 NA Intergenic Intergenic 349549 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 537-120 chr2 116392562 116393059 + 2 NA Intergenic Intergenic 1048995 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 268-161 chr18 21387954 21388169 + 2 NA intron (NM_001142966, intron 4 of 32) intron (NM_001142966, intron 4 of 32) 145819 NM_001142966 80000 Hs.149020 NM_024935 ENSG00000141449 GREB1L C18orf6|KIAA1772|RHDA3 GREB1 like retinoic acid receptor coactivator protein-coding 350-7 chr1 77339577 77339835 + 2 NA intron (NM_012093, intron 5 of 13) AluSg|SINE|Alu 56619 NM_012093 26289 Hs.559718 NM_012093 ENSG00000154027 AK5 AK6 adenylate kinase 5 protein-coding 802-7 chr10 23261218 23261809 + 2 NA intron (NM_001365862, intron 10 of 15) AluJr|SINE|Alu 69201 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 379-242 chr4 91732596 91732916 + 2 NA Intergenic L1MB4|LINE|L1 544546 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 199-259 chr9 82042536 82042722 + 2 NA Intergenic L1MA9|LINE|L1 53857 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 417-154 chr2 150703638 150703966 + 2 NA Intergenic L3|LINE|CR1 74905 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 508-115 chr2 117843049 117843411 + 2 NA Intergenic L1M4|LINE|L1 9499 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 320-297 chr2 232272827 232273065 + 2 NA intron (NR_046477, intron 12 of 18) intron (NR_046477, intron 12 of 18) 100293 NR_030288 693147 NR_030288 ENSG00000207626 MIR562 MIRN562|hsa-mir-562 microRNA 562 ncRNA 345-70 chr10 70997213 70997456 + 2 NA Intergenic Intergenic 58281 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 281-333 chr4 143176227 143176416 + 2 NA Intergenic L1MD2|LINE|L1 8540 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 272-182 chr2 41833748 41833939 + 2 NA Intergenic Intergenic -43712 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 200-229 chr5 134345293 134345450 + 2 NA intron (NM_001349366, intron 1 of 8) HAL1M8|LINE|L1 21703 NM_016508 51265 Hs.719926 NM_016508 ENSG00000006837 CDKL3 NKIAMRE cyclin dependent kinase like 3 protein-coding 122-16 chr14 62706969 62707054 + 2 NA 3' UTR (NM_172375, exon 10 of 10) 3' UTR (NM_172375, exon 10 of 10) 338447 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 293-38 chr10 67484182 67484383 + 2 NA intron (NM_001127384, intron 5 of 17) L1PA16|LINE|L1 -80872 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 361-70 chr11 30438927 30439163 + 2 NA intron (NM_001584, intron 3 of 5) intron (NM_001584, intron 3 of 5) 115941 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 330-434 chr5 119308941 119309141 + 2 NA intron (NM_001077654, intron 1 of 1) intron (NM_001077654, intron 1 of 1) -24134 NM_001286814 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 260-125 chr14 41897209 41897438 + 2 NA intron (NR_144388, intron 4 of 5) intron (NR_144388, intron 4 of 5) 290467 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 245-226 chr3 27955335 27955489 + 2 NA Intergenic Intergenic -121276 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 230-234 chr3 95361793 95361972 + 2 NA Intergenic L1MDa|LINE|L1 321311 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 283-456 chr9 26179249 26179481 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR 112690 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 286-401 chr7 4949001 4949219 + 2 NA intron (NR_072989, intron 1 of 8) AluSz6|SINE|Alu 10077 NM_001100600 221938 Hs.558694 NM_198403 ENSG00000136297 MMD2 PAQR10 monocyte to macrophage differentiation associated 2 protein-coding 249-38 chr10 20603706 20603945 + 2 NA Intergenic Intergenic 51855 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 250-143 chr15 90764049 90764232 + 2 NA intron (NM_001287246, intron 9 of 22) intron (NM_001287246, intron 9 of 22) 46794 NM_001287247 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 404-189 chr20 1629578 1629952 + 2 NA intron (NM_018556, intron 5 of 5) intron (NM_018556, intron 5 of 5) -3743 NR_110090 101929010 Hs.570358 NR_110090 ENSG00000237914 SIRPG-AS1 - SIRPG antisense RNA 1 ncRNA 201-106 chr19 29238026 29238172 + 2 NA Intergenic L1M4a1|LINE|L1 -24948 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 581-142 chr5 141263624 141263998 + 2 NA Intergenic AluSx1|SINE|Alu 18416 NM_018935 56121 Hs.130757 NM_018935 ENSG00000113248 PCDHB15 PCDH-BETA15 protocadherin beta 15 protein-coding 376-13 chr1 103845698 103846041 + 2 NA Intergenic Intergenic 96028 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 337-134 chr13 53283637 53283949 + 2 NA Intergenic Intergenic -131893 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 308-206 chr19 30272011 30272200 + 2 NA Intergenic Intergenic -100279 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 359-177 chr17 3399260 3399474 + 2 NA promoter-TSS (NM_003553) promoter-TSS (NM_003553) -957 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 234-246 chr3 96767879 96768061 + 2 NA Intergenic L1M4b|LINE|L1 -46624 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 807-14 chr13 102421214 102421649 + 2 NA Intergenic L1PREC2|LINE|L1 -18988 NM_001321947 2259 Hs.508616 NM_004115 ENSG00000102466 FGF14 FGF-14|FHF-4|FHF4|SCA27 fibroblast growth factor 14 protein-coding 753-52 chr5 144696159 144696715 + 2 NA Intergenic Intergenic 491046 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 289-169 chr16 65189909 65190177 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -13470 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 205-67 chr12 73754282 73754441 + 2 NA Intergenic L1MB7|LINE|L1 538270 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 269-78 chr11 116021898 116022124 + 2 NA Intergenic Intergenic -261811 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 672-2 chr1 118168127 118168654 + 2 NA intron (NM_206996, intron 1 of 48) intron (NM_206996, intron 1 of 48) 16838 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 482-26 chr1 229890874 229891316 + 2 NA intron (NR_146473, intron 1 of 2) L1MEc|LINE|L1 941 NR_146473 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 306-282 chr20 39733134 39733393 + 2 NA Intergenic Intergenic -271198 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 333-497 chr6 35814431 35814668 + 2 NA exon (NM_182548, exon 2 of 4) exon (NM_182548, exon 2 of 4) 9197 NM_182548 222662 Hs.367947 NM_182548 ENSG00000197753 LHFPL5 DFNB67|TMHS|dJ510O8.8 LHFPL tetraspan subfamily member 5 protein-coding 289-150 chr15 60235078 60235355 + 2 NA Intergenic Intergenic 162770 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 336-137 chr12 73011430 73011728 + 2 NA Intergenic L1PB2|LINE|L1 -147611 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 309-80 chr11 45175861 45176125 + 2 NA intron (NM_001256695, intron 1 of 7) L1MC1|LINE|L1 28650 NM_001256695 56981 Hs.178715 NM_001256695 ENSG00000019485 PRDM11 PFM8 PR/SET domain 11 protein-coding 211-321 chr9 27070007 27070176 + 2 NA Intergenic Tigger7|DNA|TcMar-Tigger -39050 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 131-82 chr9 97404582 97404659 + 2 NA Intergenic L1M4|LINE|L1 -7476 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 352-552 chr8 144979487 144979686 + 2 NA intron (NR_023392, intron 4 of 4) AluSx1|SINE|Alu -15279 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 337-532 chr8 57655692 57655880 + 2 NA Intergenic L1MB7|LINE|L1 -90363 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 260-256 chr3 6051643 6051885 + 2 NA Intergenic L1MA8|LINE|L1 753685 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 162-15 chr10 25359165 25359314 + 2 NA intron (NM_020752, intron 2 of 10) intron (NM_020752, intron 2 of 10) -182963 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 502-165 chr22 26190670 26191088 + 2 NA intron (NM_001184776, intron 1 of 14) intron (NM_001184776, intron 1 of 14) 21405 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 319-303 chr21 27058746 27058969 + 2 NA Intergenic MLT2A1|LTR|ERVL -91769 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 518-259 chr6 92616479 92616974 + 2 NA Intergenic L1PB1|LINE|L1 802833 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 283-474 chrX 43996273 43996424 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -22958 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 288-375 chr6 88138304 88138475 + 2 NA Intergenic Intergenic 6948 NM_033181 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 282-196 chr2 27131017 27131271 + 2 NA TTS (NM_032604) TTS (NM_032604) 3492 NM_013388 10113 Hs.279784 NM_013388 ENSG00000138073 PREB SEC12 prolactin regulatory element binding protein-coding 249-379 chr7 32424973 32425211 + 2 NA intron (NM_001322059, intron 1 of 17) (TA)n|Simple_repeat|Simple_repeat 3132 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 222-273 chr4 97942941 97943152 + 2 NA intron (NM_174952, intron 8 of 10) MLT1A0|LTR|ERVL-MaLR 200430 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 908-14 chr18 47364936 47365534 + 2 NA intron (NR_147192, intron 1 of 2) L1MA5|LINE|L1 -15261 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 229-281 chr4 111823589 111823776 + 2 NA Intergenic L1M5|LINE|L1 -321772 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 330-463 chr6 71100108 71100414 + 2 NA Intergenic L1PB2|LINE|L1 -143201 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 326-141 chr13 113381332 113381498 + 2 NA Intergenic MER41A|LTR|ERV1 -17267 NM_001286733 79774 Hs.745043 NM_024719 ENSG00000139835 GRTP1 TBC1D6 growth hormone regulated TBC protein 1 protein-coding 416-291 chr6 54123705 54123974 + 2 NA intron (NM_001281746, intron 2 of 11) intron (NM_001281746, intron 2 of 11) 12396 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 191-209 chr8 82259677 82259796 + 2 NA Intergenic Intergenic -417450 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 115-27 chr3 2383101 2383163 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 144303 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 325-25 chr1 164689378 164689641 + 2 NA intron (NM_001204963, intron 2 of 8) intron (NM_001204963, intron 2 of 8) 85132 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 243-182 chr18 68328001 68328225 + 2 NA Intergenic (TACA)n|Simple_repeat|Simple_repeat 386995 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 360-339 chr4 179737602 179737861 + 2 NA Intergenic Intergenic 1421418 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 320-573 chr8 126929132 126929393 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -83892 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 235-237 chr3 130969543 130969720 + 2 NA intron (NM_001001485, intron 17 of 27) intron (NM_001001485, intron 17 of 27) 57223 NM_001288950 28990 Hs.100878 NM_014065 ENSG00000034533 ASTE1 HT001 asteroid homolog 1 protein-coding 240-138 chr14 63115948 63116130 + 2 NA Intergenic L1M6|LINE|L1 -70581 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 366-265 chr22 40316985 40317273 + 2 NA intron (NM_015088, intron 19 of 20) intron (NM_015088, intron 19 of 20) -29371 NM_001317923 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 195-27 chr10 67209578 67209688 + 2 NA intron (NM_001127384, intron 6 of 17) L1M5|LINE|L1 193777 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 271-209 chr2 122609445 122609645 + 2 NA Intergenic L2b|LINE|L2 463936 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 677-13 chr10 58114419 58114933 + 2 NA Intergenic Intergenic 153218 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 498-154 chr21 19894218 19894704 + 2 NA intron (NR_146910, intron 2 of 2) L1MA7|LINE|L1 5294 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 283-471 chr9 113044462 113044672 + 2 NA intron (NM_003408, intron 3 of 3) intron (NM_003408, intron 3 of 3) 12157 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 537-260 chr8 121224849 121225175 + 2 NA Intergenic L1M4|LINE|L1 -412966 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 345-154 chr14 63174451 63174627 + 2 NA Intergenic Intergenic -29904 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 348-169 chr16 55178023 55178282 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -146407 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 327-368 chr4 92900970 92901199 + 2 NA intron (NM_001286838, intron 2 of 14) L1PB4|LINE|L1 596685 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 636-107 chr5 19232104 19232717 + 2 NA Intergenic Intergenic 653862 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 244-76 chr13 29619660 29619826 + 2 NA Intergenic Intergenic -24055 NM_003045 6541 Hs.14846 NM_003045 ENSG00000139514 SLC7A1 ATRC1|CAT-1|ERR|HCAT1|REC1L solute carrier family 7 member 1 protein-coding 192-24 chr10 64431485 64431608 + 2 NA Intergenic L1MC4a|LINE|L1 -393982 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 371-13 chr1 95380269 95380469 + 2 NA Intergenic Intergenic -28262 NR_146486 101928169 NR_146486 LINC01650 - long intergenic non-protein coding RNA 1650 ncRNA 525-284 chrX 46499104 46499477 + 2 NA 3' UTR (NM_001039891, exon 6 of 6) 3' UTR (NM_001039891, exon 6 of 6) 46131 NM_001039891 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 462-43 chr11 35973604 35973907 + 2 NA intron (NM_001304264, intron 1 of 5) AluSx|SINE|Alu 29693 NM_174902 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 453-229 chr6 77285791 77286179 + 2 NA Intergenic Intergenic 178037 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 316-297 chr2 166929955 166930120 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 41550 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 406-149 chr2 107359398 107359726 + 2 NA Intergenic Intergenic -10037 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 517-100 chr17 34723429 34723831 + 2 NA Intergenic Intergenic 142881 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 239-78 chr12 66090434 66090585 + 2 NA Intergenic Intergenic 40241 NM_032338 84298 Hs.504820 NM_032338 ENSG00000139233 LLPH C12orf31|hLLP LLP homolog, long-term synaptic facilitation factor protein-coding 512-205 chr5 5570360 5570697 + 2 NA Intergenic Intergenic 147851 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 734-75 chr8 80217435 80217980 + 2 NA Intergenic L1MB7|LINE|L1 -23682 NR_049894 100847056 NR_049894 ENSG00000265588 MIR5708 - microRNA 5708 ncRNA 274-270 chr3 158069556 158069750 + 2 NA Intergenic Intergenic 36510 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 447-218 chr5 117185045 117185425 + 2 NA Intergenic LTR81|LTR|Gypsy -230277 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 209-226 chr4 64788365 64788507 + 2 NA Intergenic Intergenic 216064 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 289-156 chr15 91199883 91200086 + 2 NA intron (NM_001323040, intron 2 of 12) intron (NM_001323040, intron 2 of 12) 98188 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 188-122 chr3 7489638 7489819 + 2 NA intron (NM_000844, intron 7 of 9) intron (NM_000844, intron 7 of 9) 45556 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 265-97 chr13 100410663 100410824 + 2 NA intron (NR_148027, intron 20 of 23) intron (NR_148027, intron 20 of 23) 70272 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 259-168 chr18 55501245 55501386 + 2 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) 9457 NM_001348211 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 409-269 chr6 146912745 146913070 + 2 NA intron (NR_034115, intron 7 of 10) intron (NR_034115, intron 7 of 10) -109083 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 458-12 chr1 222134173 222134525 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -155829 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 248-41 chr10 59923258 59923450 + 2 NA Intergenic L1M4c|LINE|L1 -16798 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 595-112 chr3 99701541 99702080 + 2 NA intron (NM_001850, intron 2 of 4) intron (NM_001850, intron 2 of 4) 63216 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 379-187 chr20 36698521 36698750 + 2 NA intron (NM_022477, intron 2 of 14) Tigger2b_Pri|DNA|TcMar-Tigger 47455 NR_038370 57446 Hs.437338 NM_022477 ENSG00000101079 NDRG3 - NDRG family member 3 protein-coding 328-40 chr1 237426613 237426794 + 2 NA intron (NM_001035, intron 12 of 104) L1M3|LINE|L1 -44416 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 174-27 chr11 115343435 115343558 + 2 NA intron (NM_001098517, intron 1 of 8) MIR|SINE|MIR 9919 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 196-80 chr14 87055482 87055626 + 2 NA Intergenic Intergenic 149776 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 308-469 chr7 79086632 79086855 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) 77755 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 369-83 chr12 42886993 42887184 + 2 NA Intergenic Intergenic 194872 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 455-263 chr7 154256843 154257231 + 2 NA intron (NM_130797, intron 1 of 25) AluJr|SINE|Alu -48122 NM_001290252 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 423-304 chr8 138019143 138019543 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 64202 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 286 chr1 9998619 9998868 + 2 NA intron (NM_052960, intron 1 of 3) LTR51|LTR|ERV1 1515 NM_052960 116362 Hs.422688 NM_052960 ENSG00000162444 RBP7 CRABP4|CRBP4|CRBPIV retinol binding protein 7 protein-coding 266-314 chr5 23230045 23230256 + 2 NA Intergenic Intergenic -277459 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 291-175 chr17 55322300 55322541 + 2 NA 3' UTR (NM_002126, exon 4 of 4) 3' UTR (NM_002126, exon 4 of 4) 56198 NM_001330375 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 336-353 chr22 30972035 30972205 + 2 NA non-coding (NR_152867, exon 2 of 4) non-coding (NR_152867, exon 2 of 4) 2909 NR_002323 55000 Hs.554829 NR_002323 ENSG00000253352 TUG1 LINC00080|NCRNA00080|TI-227H taurine up-regulated 1 ncRNA 429-102 chr15 88721040 88721356 + 2 NA Intergenic Intergenic 82182 NM_001303236 3669 Hs.459265 NM_002201 ENSG00000172183 ISG20 CD25|HEM45 interferon stimulated exonuclease gene 20 protein-coding 328-625 chrX 42551983 42552178 + 2 NA Intergenic Intergenic 226083 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 303-505 chrX 47936948 47937152 + 2 NA Intergenic LTR19B|LTR|ERV1 66939 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 443-147 chr2 64141118 64141428 + 2 NA intron (NM_020651, intron 1 of 6) intron (NM_020651, intron 1 of 6) 3147 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 477-294 chr8 135526730 135527099 + 2 NA intron (NM_006558, intron 2 of 8) intron (NM_006558, intron 2 of 8) 69458 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 555-193 chr7 134490140 134490525 + 2 NA Intergenic Intergenic -31093 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 344-45 chr10 32647491 32647822 + 2 NA intron (NM_001321115, intron 21 of 43) L1PA16|LINE|L1 201516 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 338-128 chr12 61619009 61619194 + 2 NA Intergenic L1MA9|LINE|L1 573738 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 375-113 chr13 76812330 76812622 + 2 NA Intergenic Intergenic 73929 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 359-20 chr1 109936277 109936590 + 2 NA Intergenic L1M4|LINE|L1 25584 NM_172210 1435 Hs.173894 NM_000757 ENSG00000184371 CSF1 CSF-1|MCSF colony stimulating factor 1 protein-coding 121-39 chr3 59393472 59393590 + 2 NA Intergenic L2a|LINE|L2 264966 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 328-114 chr12 87737213 87737504 + 2 NA Intergenic L1MC3|LINE|L1 -31454 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 232-381 chr8 113761923 113762110 + 2 NA Intergenic L1PA13|LINE|L1 -325077 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 483-263 chr8 79180130 79180452 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -151897 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 266-104 chr14 27458705 27458892 + 2 NA intron (NR_148991, intron 2 of 2) L1ME1|LINE|L1 -153790 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 288-278 chr3 161175099 161175243 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -46119 NM_015938 51068 Hs.598836 NM_015938 ENSG00000169251 NMD3 CGI-07 NMD3 ribosome export adaptor protein-coding 415-305 chr9 87619869 87620262 + 2 NA intron (NM_004938, intron 3 of 25) intron (NM_004938, intron 3 of 25) 66611 NR_146781 100506897 Hs.656160 NR_146781 ENSG00000236709 DAPK1-IT1 - DAPK1 intronic transcript 1 ncRNA 310-200 chr18 42707362 42707665 + 2 NA Intergenic Intergenic 408172 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 248-339 chr6 28155776 28155941 + 2 NA 3' UTR (NM_001278119, exon 7 of 7) 3' UTR (NM_001278119, exon 7 of 7) -5903 NR_103448 651302 Hs.172143 NM_001145129 ENSG00000226314 ZNF192P1 ZNF389|ZNF389P|dJ265C24.4 zinc finger protein 192 pseudogene 1 pseudo 133-35 chr2 76518503 76518622 + 2 NA Intergenic (TTTTT)n|Simple_repeat|Simple_repeat -467403 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 260-337 chr5 11840624 11840791 + 2 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 63739 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 246-343 chr5 180052348 180052541 + 2 NA intron (NM_001280801, intron 1 of 7) L3|LINE|CR1 19315 NM_001280801 55819 Hs.484363 NM_018434 ENSG00000113269 RNF130 G1RZFP|GOLIATH|GP ring finger protein 130 protein-coding 410-115 chr18 64035024 64035270 + 2 NA Intergenic L2c|LINE|L2 65066 NM_001366198 5271 Hs.368077 NM_002640 ENSG00000166401 SERPINB8 C18orf53|CAP2|PI-8|PI8|PSS5 serpin family B member 8 protein-coding 336-576 chr9 35505688 35505957 + 2 NA intron (NM_001330740, intron 1 of 10) L1M4|LINE|L1 15711 NR_052015 9853 Hs.493796 NM_014806 ENSG00000198853 RUSC2 Iporin|MRT61 RUN and SH3 domain containing 2 protein-coding 414-58 chr11 135028594 135028999 + 2 NA Intergenic Intergenic 43444 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 287-266 chr3 150482880 150483133 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 63490 NM_014445 27230 Hs.518326 NM_014445 ENSG00000120742 SERP1 RAMP4 stress associated endoplasmic reticulum protein 1 protein-coding 295-131 chr14 66113743 66113919 + 2 NA Intergenic L1ME3|LINE|L1 -372540 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 251-236 chr3 88372769 88372970 + 2 NA intron (NM_001368167, intron 2 of 2) L1M4a1|LINE|L1 34413 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 394-217 chr3 96499761 96500000 + 2 NA Intergenic Intergenic 139916 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 295-338 chr4 59521983 59522226 + 2 NA Intergenic L2a|LINE|L2 508531 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 677-89 chr9 76817321 76817884 + 2 NA intron (NM_001308048, intron 6 of 17) MLT1J1|LTR|ERVL-MaLR 53166 NR_132313 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 299-491 chr9 115102839 115103060 + 2 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 15208 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 393-359 chr8 96757410 96757648 + 2 NA intron (NM_016134, intron 1 of 7) L1M6|LINE|L1 112287 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 283-461 chr9 72326888 72327143 + 2 NA intron (NR_110952, intron 2 of 4) MER58B|DNA|hAT-Charlie 21579 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 279-283 chr4 28807928 28808096 + 2 NA Intergenic MIR3|SINE|MIR -11570 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 264-184 chr19 23391135 23391300 + 2 NA intron (NM_003430, intron 1 of 3) MER92B|LTR|ERV1 4254 NM_001300951 7644 Hs.58834 NM_003430 ENSG00000167232 ZNF91 HPF7|HTF10 zinc finger protein 91 protein-coding 263-381 chr7 11838847 11839038 + 2 NA Intergenic L1M1|LINE|L1 -6744 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 255-174 chr19 9737096 9737259 + 2 NA Intergenic AluSq2|SINE|Alu 31561 NM_001353799 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 554-11 chr1 100683559 100683931 + 2 NA Intergenic Intergenic -35895 NM_080682 7412 Hs.109225 NM_001078 ENSG00000162692 VCAM1 CD106|INCAM-100 vascular cell adhesion molecule 1 protein-coding 217-50 chr10 86278753 86278919 + 2 NA intron (NM_017551, intron 2 of 15) L1M5|LINE|L1 -14048 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 263-74 chr11 111206449 111206654 + 2 NA Intergenic Intergenic -39174 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 383-116 chr14 72518879 72519088 + 2 NA intron (NM_001370288, intron 15 of 16) L2b|LINE|L2 2163 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 411-93 chr14 81924044 81924341 + 2 NA Intergenic Intergenic -181054 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 324-70 chr10 90301304 90301577 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 239365 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 711-37 chr2 222983241 222983796 + 2 NA Intergenic Intergenic -68412 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 340-250 chr2 66022758 66022976 + 2 NA Intergenic Intergenic 335461 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 318-578 chr9 95544361 95544667 + 2 NA Intergenic L2|LINE|L2 -27457 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 659-62 chr20 31318256 31318705 + 2 NA Intergenic Intergenic -9895 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 307-468 chr8 3312766 3312997 + 2 NA intron (NM_033225, intron 23 of 69) intron (NM_033225, intron 23 of 69) -584430 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 473-5 chr1 75150056 75150394 + 2 NA intron (NM_001001933, intron 8 of 9) AluJb|SINE|Alu 15837 NM_001256114 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 334-102 chr12 5128511 5128805 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 84779 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 319-369 chr4 55530831 55531062 + 2 NA intron (NM_004898, intron 1 of 22) HAL1|LINE|L1 14986 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 296-101 chr12 26563201 26563398 + 2 NA intron (NM_002223, intron 34 of 56) AluSc5|SINE|Alu 269895 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 320-237 chr19 31860509 31860738 + 2 NA Intergenic Charlie19a|DNA|hAT-Charlie -165239 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 352-212 chr19 52288408 52288717 + 2 NA intron (NM_001010851, intron 3 of 3) AluJr|SINE|Alu 6765 NR_030373 693228 NR_030373 ENSG00000208002 MIR643 MIRN643|hsa-mir-643|mir-643 microRNA 643 ncRNA 276-358 chr5 2991461 2991638 + 2 NA Intergenic Intergenic 73695 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 289-102 chr12 42832344 42832602 + 2 NA Intergenic Intergenic 140257 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 384-48 chr10 120162096 120162289 + 2 NA Intergenic (ATATTAT)n|Simple_repeat|Simple_repeat 193031 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 366-254 chr21 15989753 15989989 + 2 NA Intergenic Intergenic -80617 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 319-451 chr6 23046311 23046517 + 2 NA Intergenic L1MC5a|LINE|L1 -328490 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 131-36 chr2 24949576 24949682 + 2 NA intron (NM_001198559, intron 5 of 5) intron (NM_001198559, intron 5 of 5) 22326 NM_016544 51277 Hs.434993 NM_016544 ENSG00000115137 DNAJC27 RBJ|RabJS DnaJ heat shock protein family (Hsp40) member C27 protein-coding 486-247 chr5 133379468 133379820 + 2 NA intron (NM_015082, intron 4 of 15) L1M4b|LINE|L1 48062 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 451-218 chr7 53469738 53470098 + 2 NA Intergenic LTR16C|LTR|ERVL 342013 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 338-430 chr5 43949617 43949801 + 2 NA Intergenic L1PA16|LINE|L1 -346479 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 382-380 chr7 47025914 47026227 + 2 NA Intergenic Intergenic -328948 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 257-295 chr4 42543384 42543566 + 2 NA intron (NM_001105529, intron 19 of 35) intron (NM_001105529, intron 19 of 35) 113630 NM_006095 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 174-3 chr1 96894348 96894477 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 171774 NR_125356 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 361-404 chr6 168473212 168473413 + 2 NA intron (NM_001166412, intron 1 of 12) intron (NM_001166412, intron 1 of 12) 32128 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 344-92 chr11 115058784 115059112 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -274629 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 254-322 chr5 126027064 126027301 + 2 NA Intergenic L1PA13|LINE|L1 -152395 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 513-275 chr8 53789216 53789598 + 2 NA intron (NM_213620, intron 9 of 13) FLAM_C|SINE|Alu 53635 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 449-10 chr1 111292614 111293037 + 2 NA intron (NM_021797, intron 1 of 8) L1MB3|LINE|L1 1974 NM_001040623 27159 Hs.128814 NM_021797 ENSG00000134216 CHIA AMCASE|CHIT2|TSA1902 chitinase acidic protein-coding 335-565 chr9 36050845 36051029 + 2 NA intron (NM_021111, intron 1 of 20) L2a|LINE|L2 14024 NM_001316347 8434 Hs.388918 NM_021111 ENSG00000122707 RECK ST15 reversion inducing cysteine rich protein with kazal motifs protein-coding 350-190 chr18 9602855 9603078 + 2 NA intron (NM_001042388, intron 2 of 19) intron (NM_001042388, intron 2 of 19) 11593 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 158-37 chr16 23830927 23831018 + 2 NA Intergenic L1M4|LINE|L1 -5011 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 447-58 chr12 46501260 46501637 + 2 NA intron (NR_125380, intron 3 of 3) L1M3d|LINE|L1 117341 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 316-317 chr20 39285343 39285587 + 2 NA Intergenic Intergenic -60717 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 260-230 chr2 212784253 212784415 + 2 NA Intergenic L1M3|LINE|L1 -10997 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 466-171 chr3 21215238 21215559 + 2 NA Intergenic L1PA11|LINE|L1 -190328 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 643-102 chr6 64422479 64422901 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 615854 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 178-94 chr3 195441268 195441426 + 2 NA intron (NM_012287, intron 1 of 22) intron (NM_012287, intron 1 of 22) 1673 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 261-28 chr1 233773430 233773629 + 2 NA Intergenic L1MC1|LINE|L1 -131147 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 323-498 chr7 49598627 49598912 + 2 NA Intergenic Intergenic -174869 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 304-259 chr2 85168159 85168458 + 2 NA intron (NM_031283, intron 3 of 11) L1MA10|LINE|L1 -18101 NR_046797 100874334 Hs.693125 NR_046797 ENSG00000231134 TCF7L1-IT1 - TCF7L1 intronic transcript 1 ncRNA 372-112 chr12 46631730 46631978 + 2 NA intron (NR_125377, intron 3 of 3) intron (NR_125377, intron 3 of 3) 194143 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 123-39 chr4 81257145 81257224 + 2 NA Intergenic Intergenic -41962 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 546-77 chr15 54512688 54513059 + 2 NA intron (NM_001329919, intron 23 of 31) intron (NM_001329919, intron 23 of 31) 500225 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 278-340 chr5 67338785 67339056 + 2 NA Intergenic Intergenic -142121 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 668-57 chr21 35278647 35279015 + 2 NA Intergenic L1MD|LINE|L1 -229533 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 526-63 chr12 109372048 109372514 + 2 NA Intergenic Intergenic -12793 NR_120462 101928138 Hs.143843 NR_120462 ENSG00000256560 LINC01486 - long intergenic non-protein coding RNA 1486 ncRNA 268-366 chr7 46397942 46398107 + 2 NA Intergenic Intergenic 299098 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 202-131 chr2 162944951 162945108 + 2 NA Intergenic L1M1|LINE|L1 -106262 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 145-30 chr14_KI270722v1_random 172308 172398 + 2 NA NA L1M4b|LINE|L1 NA NA 603-175 chr9 77541590 77541961 + 2 NA intron (NM_004297, intron 1 of 6) L1MA4A|LINE|L1 94126 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 349-73 chr10 81169840 81170071 + 2 NA Intergenic L1M5|LINE|L1 520158 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 425-217 chr4 188034610 188034988 + 2 NA Intergenic AluSx1|SINE|Alu 39028 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 319-578 chr9 96049853 96050069 + 2 NA Intergenic Intergenic -15878 NR_033838 158435 Hs.652615 NR_033838 LOC158435 - uncharacterized LOC158435 ncRNA 209-336 chr8 132836266 132836430 + 2 NA intron (NM_001277196, intron 14 of 19) intron (NM_001277196, intron 14 of 19) -30610 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 348-435 chr5 155602332 155602530 + 2 NA Intergenic Intergenic 588676 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 300-30 chr10 6264569 6264814 + 2 NA Intergenic L1MC4|LINE|L1 61759 NM_001363545 5209 Hs.195471 NM_004566 ENSG00000170525 PFKFB3 IPFK2|PFK2|iPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 251-84 chr13 112607424 112607575 + 2 NA Intergenic Intergenic -19314 NM_001286279 10426 Hs.224152 NM_006322 ENSG00000126216 TUBGCP3 104p|ALP6|GCP3|Grip104|SPBC98|Spc98|Spc98p tubulin gamma complex associated protein 3 protein-coding 264-313 chr5 24824382 24824540 + 2 NA Intergenic L1PA16|LINE|L1 16122 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 239-373 chr7 49135645 49135796 + 2 NA Intergenic Intergenic 211173 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 372-161 chr15 49828474 49828785 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 207581 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 189-34 chr11 128241114 128241262 + 2 NA intron (NR_146647, intron 3 of 3) intron (NR_146647, intron 3 of 3) 32422 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 305-255 chr2 67675892 67676184 + 2 NA Intergenic Intergenic 149524 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 488-96 chr16 35490677 35491048 + 2 NA Intergenic Intergenic -10266 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 641-106 chr8 15959652 15960136 + 2 NA Intergenic Intergenic 226378 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 324-429 chr5 60872408 60872615 + 2 NA Intergenic L1MA8|LINE|L1 -28237 NM_001104558 79993 Hs.274256 NM_024930 ENSG00000164181 ELOVL7 - ELOVL fatty acid elongase 7 protein-coding 370-422 chr7 70548025 70548310 + 2 NA intron (NM_015570, intron 5 of 18) intron (NM_015570, intron 5 of 18) -583977 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 386-157 chr2 5706977 5707330 + 2 NA Intergenic CpG 14769 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 308-23 chr1 112075064 112075262 + 2 NA Intergenic Intergenic 84627 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 196-153 chr20 48074062 48074219 + 2 NA Intergenic LTR33|LTR|ERVL -84023 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 226-280 chr5 60477210 60477364 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -10426 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 395-71 chr12 49890093 49890359 + 2 NA intron (NM_012306, intron 7 of 11) intron (NM_012306, intron 7 of 11) 13674 NM_012306 23017 Hs.567424 NM_012306 ENSG00000135472 FAIM2 LFG|LFG2|NGP35|NMP35|TMBIM2 Fas apoptotic inhibitory molecule 2 protein-coding 431-329 chrX 153089819 153090234 + 2 NA Intergenic Intergenic 17612 NM_032882 84968 Hs.533301 NM_032882 ENSG00000235961 PNMA6A MA6|PNMA6|PNMA6C PNMA family member 6A protein-coding 666-48 chr19 28226115 28226689 + 2 NA Intergenic Intergenic -380286 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 418-141 chr20 40828910 40829173 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -114418 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 291-99 chr12 42461536 42461715 + 2 NA intron (NM_001144881, intron 7 of 7) intron (NM_001144881, intron 7 of 7) 21990 NM_001144881 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 275-33 chr10 11281456 11281696 + 2 NA intron (NM_001025076, intron 8 of 13) AluJb|SINE|Alu 63098 NR_126062 414196 Hs.729598 NM_001012713 CELF2-AS1 C10orf31 CELF2 antisense RNA 1 ncRNA 327-174 chr15 77396780 77397100 + 2 NA intron (NM_024776, intron 1 of 7) L1MA3|LINE|L1 23164 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 306-78 chr11 48771253 48771429 + 2 NA Intergenic ALR/Alpha|Satellite|centr -260259 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 778-25 chr14_GL000225v1_random 65918 66611 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 242-289 chr5 11884546 11884732 + 2 NA intron (NM_001288717, intron 1 of 20) L1MA9|LINE|L1 19807 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 377-375 chr7 62956386 62956651 + 2 NA Intergenic ALR/Alpha|Satellite|centr 347538 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 278-242 chr2 219965634 219965858 + 2 NA Intergenic Intergenic -59181 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 277-263 chr3 102290160 102290429 + 2 NA Intergenic L1PB1|LINE|L1 126589 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 531-153 chr3 63970334 63970784 + 2 NA intron (NM_001128149, intron 1 of 8) intron (NM_001128149, intron 1 of 8) 2765 NM_001128149 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7|SGF73 ataxin 7 protein-coding 376-128 chr16 17022987 17023354 + 2 NA Intergenic Intergenic -111334 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 596-121 chr3 94277451 94277870 + 2 NA Intergenic Intergenic 214599 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 288-151 chr16 80394921 80395202 + 2 NA intron (NR_120307, intron 2 of 5) L1MC5|LINE|L1 -145673 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 270-399 chr8 109965136 109965315 + 2 NA 3' UTR (NM_014379, exon 4 of 4) 3' UTR (NM_014379, exon 4 of 4) 10546 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 150-71 chr3 135340636 135340711 + 2 NA Intergenic L1MB5|LINE|L1 545413 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 164-88 chr4 85915295 85915448 + 2 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -14645 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 460-15 chr1 180451377 180451748 + 2 NA intron (NM_032360, intron 3 of 7) L1MB8|LINE|L1 -13172 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 267-372 chr6 72174690 72174875 + 2 NA intron (NM_014989, intron 4 of 33) intron (NM_014989, intron 4 of 33) -38111 NM_001350429 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 245-301 chr6 54038045 54038238 + 2 NA intron (NM_001281746, intron 1 of 11) intron (NM_001281746, intron 1 of 11) 9453 NR_046710 100873951 NR_046710 MLIP-AS1 - MLIP antisense RNA 1 ncRNA 218-281 chr6 4449553 4449736 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -39154 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 222-26 chr1 233236152 233236323 + 2 NA intron (NM_014801, intron 9 of 33) intron (NM_014801, intron 9 of 33) 59488 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 325-375 chr4 7643525 7643844 + 2 NA intron (NM_020777, intron 4 of 26) intron (NM_020777, intron 4 of 26) -110406 NR_026892 84740 Hs.663029 NM_032654 ENSG00000272620 AFAP1-AS1 AFAP1-AS|AFAP1AS AFAP1 antisense RNA 1 ncRNA 354-442 chr7 109838651 109838990 + 2 NA Intergenic L1M4|LINE|L1 121393 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 318-513 chr7 64401125 64401291 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -32485 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 335-211 chr18 32236590 32236795 + 2 NA Intergenic Intergenic 46653 NM_001308171 4225 Hs.194777 NM_005925 ENSG00000141434 MEP1B - meprin A subunit beta protein-coding 429-251 chr6 40192214 40192527 + 2 NA Intergenic Intergenic 163636 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 363-389 chr6 65079648 65079862 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -221663 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 442-185 chr3 34542067 34542450 + 2 NA Intergenic Intergenic 743628 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 553-236 chr8 120078359 120078798 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -46524 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 358-484 chr8 104762921 104763234 + 2 NA Intergenic Intergenic -174053 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 282-337 chr4 52138290 52138486 + 2 NA Intergenic Intergenic 87084 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 544 chr1 9284371 9284725 + 2 NA Intergenic MIR|SINE|MIR -8346 NM_025106 80176 Hs.8261 NM_025106 ENSG00000171621 SPSB1 SSB-1|SSB1 splA/ryanodine receptor domain and SOCS box containing 1 protein-coding 264-98 chr12 84317554 84317767 + 2 NA Intergenic Intergenic 595139 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 192-6 chr1 71369592 71369766 + 2 NA Intergenic (CTCC)n|Simple_repeat|Simple_repeat 288355 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 193-63 chr14 71969410 71969587 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 35971 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 701-56 chr20 61600490 61601049 + 2 NA intron (NM_001252339, intron 1 of 14) MER2|DNA|TcMar-Tigger 1008 NM_001252339 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 518-89 chr15 69460794 69461134 + 2 NA Intergenic Intergenic 8146 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 365-62 chr10 106497390 106497747 + 2 NA Intergenic LTR8B|LTR|ERV1 357403 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 240-23 chr1 193895490 193895706 + 2 NA Intergenic Intergenic 590853 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 294-275 chr22 26507483 26507727 + 2 NA intron (NM_001346862, intron 2 of 12) AluJr|SINE|Alu 4868 NM_012143 24144 Hs.20225 NM_012143 ENSG00000100109 TFIP11 NTR1|STIP|STIP-1|Spp382|TIP39|bK445C9.6 tuftelin interacting protein 11 protein-coding 232-149 chr19 11782417 11782641 + 2 NA 3' UTR (NM_152355, exon 4 of 4) 3' UTR (NM_152355, exon 4 of 4) 15529 NM_152355 126068 Hs.675132 NM_152355 ENSG00000197044 ZNF441 - zinc finger protein 441 protein-coding 323-169 chr15 96940930 96941154 + 2 NA Intergenic L1MA2|LINE|L1 157607 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 900-42 chr7 75627792 75628407 + 2 NA intron (NM_005338, intron 1 of 30) intron (NM_005338, intron 1 of 30) -99976 NR_028059 5387 Hs.659871 NM_005395 ENSG00000127957 PMS2P3 PMS2L3|PMS2L9|PMS5|PMSR3 PMS1 homolog 2, mismatch repair system component pseudogene 3 pseudo 214-293 chr7 20542482 20542657 + 2 NA Intergenic Intergenic -73098 NM_001163941 340273 Hs.404102 NM_178559 ENSG00000004846 ABCB5 ABCB5alpha|ABCB5beta|EST422562 ATP binding cassette subfamily B member 5 protein-coding 393-175 chr2 157230919 157231129 + 2 NA Intergenic AluSx|SINE|Alu -26681 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 546-57 chr12 106257911 106258360 + 2 NA Intergenic L1MA2|LINE|L1 -10115 NM_006825 10970 Hs.74368 NM_006825 ENSG00000136026 CKAP4 CLIMP-63|ERGIC-63|p63 cytoskeleton associated protein 4 protein-coding 155-57 chr2 204125756 204125856 + 2 NA Intergenic Intergenic 189058 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 252-33 chr10 21733434 21733619 + 2 NA non-coding (NR_136736, exon 22 of 26) non-coding (NR_136736, exon 22 of 26) 199354 NM_001195630 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 276-374 chr5 93744946 93745148 + 2 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -3447 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 243-464 chr8 138258346 138258546 + 2 NA intron (NM_015912, intron 4 of 19) intron (NM_015912, intron 4 of 19) -174901 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 209-281 chr6 141667345 141667499 + 2 NA Intergenic Intergenic 421377 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 266-255 chr3 95681751 95681979 + 2 NA intron (NR_077228, intron 1 of 4) (AATATTA)n|Simple_repeat|Simple_repeat 1328 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 593-166 chr9 111545754 111546154 + 2 NA 3' UTR (NM_133464, exon 6 of 6) 3' UTR (NM_133464, exon 6 of 6) 20775 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 203-253 chr9 103433098 103433229 + 2 NA Intergenic L3|LINE|CR1 -108130 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 312-73 chr11 14708797 14708957 + 2 NA intron (NM_000922, intron 1 of 15) L1MC4|LINE|L1 65073 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 230-301 chr5 85415218 85415379 + 2 NA Intergenic L1PA14|LINE|L1 -867146 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 358-497 chr8 130583220 130583566 + 2 NA Intergenic Intergenic -139719 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 332-123 chr12 37330383 37330561 + 2 NA Intergenic ALR/Alpha|Satellite|centr -986302 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 387-374 chr8 126656361 126656653 + 2 NA Intergenic LTR32|LTR|ERVL -98029 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 518-67 chr12 88680417 88680770 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -100120 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 646-39 chr15 62725411 62725888 + 2 NA intron (NM_015059, intron 24 of 55) MIRb|SINE|MIR 78338 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 421-110 chr17 70027094 70027457 + 2 NA Intergenic L1PREC2|LINE|L1 -23996 NR_104129 101928141 Hs.639899 NR_104129 ENSG00000267603 LINC01028 TCONS_00025127 long intergenic non-protein coding RNA 1028 ncRNA 357-2 chr1 29722973 29723210 + 2 NA Intergenic L2b|LINE|L2 314521 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 376-219 chr20 47814133 47814451 + 2 NA Intergenic L2a|LINE|L2 -27676 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 246-175 chr18 73543285 73543480 + 2 NA Intergenic Intergenic 218441 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 399-138 chr2 35869541 35869933 + 2 NA Intergenic L1MEc|LINE|L1 398332 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 331-508 chr7 94211567 94211744 + 2 NA Intergenic L2b|LINE|L2 180537 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 567-9 chr1 147861158 147861566 + 2 NA Intergenic MIRc|SINE|MIR -41433 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 484-182 chr3 161999564 161999891 + 2 NA Intergenic L1MB1|LINE|L1 502919 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 412-272 chr6 18478498 18478818 + 2 NA Intergenic L1M5|LINE|L1 -44089 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 254-249 chr3 108501488 108501661 + 2 NA intron (NM_014981, intron 4 of 41) intron (NM_014981, intron 4 of 41) 27748 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 323-370 chr4 60079108 60079331 + 2 NA Intergenic Intergenic -843400 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 395-297 chr6 136077134 136077385 + 2 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) -4432 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 240-269 chr21 42242110 42242321 + 2 NA intron (NM_207627, intron 3 of 15) intron (NM_207627, intron 3 of 15) 22317 NM_207174 9619 Hs.124649 NM_004915 ENSG00000160179 ABCG1 ABC8|WHITE1 ATP binding cassette subfamily G member 1 protein-coding 311-221 chr18 73193463 73193660 + 2 NA intron (NR_034133, intron 3 of 5) intron (NR_034133, intron 3 of 5) 70937 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 227-17 chr1 171500330 171500518 + 2 NA intron (NM_015172, intron 1 of 33) AluJo|SINE|Alu 14894 NM_015172 23215 Hs.494614 NM_015172 ENSG00000117523 PRRC2C BAT2-iso|BAT2D1|BAT2L2|XTP2 proline rich coiled-coil 2C protein-coding 521-118 chr2 26526247 26526617 + 2 NA intron (NM_194248, intron 3 of 46) (ATGG)n|Simple_repeat|Simple_repeat 32324 NM_001287489 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 437-30 chr10 108016775 108017053 + 2 NA intron (NR_125760, intron 4 of 4) L1M4c|LINE|L1 52379 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 407-98 chr16 47116420 47116798 + 2 NA intron (NM_001201477, intron 6 of 8) L1ME1|LINE|L1 27336 NM_001201477 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 718-28 chr15 78513082 78513668 + 2 NA exon (NM_001013619, exon 2 of 5) exon (NM_001013619, exon 2 of 5) 5798 NM_001013619 123688 Hs.307962 NM_001013619 ENSG00000188266 HYKK AGPHD1 hydroxylysine kinase protein-coding 332-49 chr10 18475687 18475875 + 2 NA intron (NM_201593, intron 3 of 13) MIRb|SINE|MIR 75206 NM_201570 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 378-65 chr10 88367427 88367688 + 2 NA intron (NM_018363, intron 4 of 6) L1ME3A|LINE|L1 215761 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 322-7 chr1 51040891 51041084 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -18850 NR_039617 100616189 NR_039617 ENSG00000265538 MIR4421 - microRNA 4421 ncRNA 209-156 chr2 104801747 104801898 + 2 NA Intergenic Intergenic -44103 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 715-55 chr3 180334995 180335506 + 2 NA Intergenic Intergenic -78923 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 215-37 chr10 64569849 64570050 + 2 NA Intergenic Intergenic -255579 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 306-109 chr12 81196298 81196490 + 2 NA intron (NM_024560, intron 8 of 15) MER33|DNA|hAT-Charlie 38006 NR_039848 100616133 NR_039848 ENSG00000265227 MIR4699 - microRNA 4699 ncRNA 872-51 chr8 142424874 142425444 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -21977 NM_001291931 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 489-136 chr2 81340042 81340472 + 2 NA Intergenic L1MB4|LINE|L1 126689 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 708-49 chr3 121344853 121345484 + 2 NA intron (NM_001348343, intron 21 of 27) L1PA6|LINE|L1 200820 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 325-282 chr2 129506628 129506890 + 2 NA Intergenic L1M3|LINE|L1 -232868 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 351-24 chr1 210962323 210962617 + 2 NA intron (NM_002238, intron 6 of 10) L1ME3F|LINE|L1 170904 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 338-355 chr3 159557286 159557489 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 211225 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 227-34 chr10 39329365 39329559 + 2 NA Intergenic ALR/Alpha|Satellite|centr 632866 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 280-105 chr13 31493089 31493362 + 2 NA Intergenic L1PB3|LINE|L1 -246301 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 216-154 chr19 57599540 57599720 + 2 NA promoter-TSS (NM_001321981) promoter-TSS (NM_001321981) -255 NM_020880 348327 Hs.97111 NM_020880 ENSG00000183647 ZNF530 - zinc finger protein 530 protein-coding 275-169 chr19 12474638 12474841 + 2 NA intron (NM_152601, intron 1 of 3) L1M4c|LINE|L1 10077 NM_152601 163051 Hs.631623 NM_152601 ENSG00000242852 ZNF709 - zinc finger protein 709 protein-coding 361-398 chr6 132329822 132330056 + 2 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 71536 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 356-3 chr1 17757819 17758096 + 2 NA intron (NM_030812, intron 1 of 2) ERVL-E-int|LTR|ERVL 2624 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 146-42 chr2 121172942 121173027 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie 112218 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 281-471 chrX 80505784 80505999 + 2 NA Intergenic L1PB3|LINE|L1 85444 NM_152630 169966 Hs.367959 NM_152630 ENSG00000174016 TENT5D CT1.26|CT112|FAM46D terminal nucleotidyltransferase 5D protein-coding 139-59 chr3 177541386 177541522 + 2 NA intron (NR_047568, intron 2 of 3) intron (NR_047568, intron 2 of 3) 99533 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 301-464 chr8 126022732 126022925 + 2 NA Intergenic Intergenic -71631 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 313-68 chr10 121701343 121701622 + 2 NA Intergenic Intergenic -103024 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 250-409 chr7 133927295 133927493 + 2 NA intron (NM_021807, intron 13 of 17) intron (NM_021807, intron 13 of 17) -102506 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 184-20 chr1 244951169 244951303 + 2 NA Intergenic Intergenic -18633 NM_032328 84288 Hs.134857 NM_032328 ENSG00000203666 EFCAB2 CFAP200|DRC8 EF-hand calcium binding domain 2 protein-coding 309-483 chr6 93528768 93529049 + 2 NA Intergenic Intergenic -109326 NM_001288630 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 352-198 chr18 64928039 64928384 + 2 NA Intergenic L2|LINE|L2 -668156 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 335-229 chr2 11908722 11908945 + 2 NA Intergenic Intergenic -71847 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 271-263 chr3 44721546 44721739 + 2 NA exon (NM_001134442, exon 3 of 3) exon (NM_001134442, exon 3 of 3) -7964 NM_145044 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 416-112 chr14 20089706 20090042 + 2 NA Intergenic L1PA16|LINE|L1 -27594 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 323-66 chr10 92859314 92859545 + 2 NA intron (NM_001319195, intron 1 of 21) L1M4b|LINE|L1 10909 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 278-182 chr18 70697500 70697729 + 2 NA Intergenic AluSx4|SINE|Alu -46660 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 380-13 chr1 70627483 70627786 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -78819 NR_125938 101927244 Hs.568660 NR_125938 ENSG00000229051 LINC01788 - long intergenic non-protein coding RNA 1788 ncRNA 245-283 chr5 73892927 73893112 + 2 NA intron (NM_001177693, intron 27 of 35) intron (NM_001177693, intron 27 of 35) 79473 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 353-48 chr10 20282911 20283195 + 2 NA 3' UTR (NM_001282736, exon 13 of 13) 3' UTR (NM_001282736, exon 13 of 13) -268917 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 482-143 chr20 655601 656043 + 2 NA Intergenic LTR16E1|LTR|ERVL -2622 NM_080725 140809 Hs.516830 NM_080725 ENSG00000271303 SRXN1 C20orf139|Npn3|SRX|SRX1 sulfiredoxin 1 protein-coding 335-502 chr7 49219570 49219738 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR 295107 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 453-214 chr5 148600015 148600287 + 2 NA intron (NM_001040172, intron 1 of 5) L1ME3|LINE|L1 36910 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 459-62 chr12 22950914 22951296 + 2 NA Intergenic L1MB4|LINE|L1 -224531 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 346-28 chr1 179678570 179678907 + 2 NA intron (NM_001199091, intron 16 of 16) L1ME1|LINE|L1 -49038 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 327-197 chr17 59020940 59021147 + 2 NA intron (NR_148346, intron 19 of 23) L1MA3|LINE|L1 85837 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 324-414 chr5 5749334 5749552 + 2 NA Intergenic Intergenic 326766 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 215-270 chr5 169435477 169435682 + 2 NA Intergenic Intergenic -134440 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 375-450 chr9 79529478 79529845 + 2 NA Intergenic Intergenic -42112 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 313-127 chr13 92150305 92150611 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) 201749 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 117-32 chr5 36798102 36798205 + 2 NA Intergenic Intergenic 78541 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 620-7 chr1 181652450 181652922 + 2 NA intron (NM_001205293, intron 7 of 47) HAL1|LINE|L1 169169 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 480-153 chr2 115298003 115298366 + 2 NA intron (NM_001321906, intron 2 of 26) L2c|LINE|L2 -11053 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 307-175 chr16 60920318 60920498 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 135358 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 180-52 chr16 2915841 2915976 + 2 NA intron (NM_020912, intron 2 of 8) intron (NM_020912, intron 2 of 8) 3929 NM_001308068 84256 Hs.655321 NM_020912 ENSG00000059122 FLYWCH1 - FLYWCH-type zinc finger 1 protein-coding 498-193 chr4 59759369 59759708 + 2 NA Intergenic MER52C|LTR|ERV1 745965 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 386-118 chr15 69822903 69823165 + 2 NA Intergenic Intergenic -12200 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 340-80 chr11 82262710 82262926 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 141095 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 220-103 chr13 85850689 85850874 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -51362 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 331-52 chr10 66347912 66348139 + 2 NA intron (NM_001127384, intron 12 of 17) L1MEd|LINE|L1 -578011 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 570-206 chr9 6361025 6361423 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 32849 NM_001001874 89882 Hs.351815 NM_033516 ENSG00000170777 TPD52L3 D55|NYDSP25|hD55 TPD52 like 3 protein-coding 204-22 chr10 25406910 25407032 + 2 NA intron (NM_020752, intron 3 of 10) LTR24C|LTR|ERV1 -230695 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 335-267 chr2 147320520 147320793 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -523861 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 397-148 chr2 33973057 33973268 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -94064 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 214-221 chr3 149454393 149454506 + 2 NA Intergenic L2b|LINE|L2 -20248 NM_004617 7104 Hs.133527 NM_004617 ENSG00000169903 TM4SF4 ILTMP|il-TMP transmembrane 4 L six family member 4 protein-coding 151-47 chr21 32230485 32230585 + 2 NA Intergenic Intergenic 48514 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 301-348 chr5 25885584 25885846 + 2 NA Intergenic Intergenic 694762 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 557-160 chr5 82374996 82375376 + 2 NA Intergenic Intergenic 95724 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 286-328 chr4 170995527 170995746 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -44966 NR_038838 100506122 Hs.434205 NR_038838 ENSG00000248872 LINC02431 - long intergenic non-protein coding RNA 2431 ncRNA 335-66 chr10 88356594 88356792 + 2 NA intron (NM_018363, intron 5 of 6) L4_C_Mam|LINE|RTE-X 226625 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 163-39 chr12 133036068 133036162 + 2 NA intron (NR_110091, intron 1 of 2) LTR45C|LTR|ERV1 1107 NR_110091 101928597 Hs.638942 NR_110091 ENSG00000246394 ZNF84-DT - ZNF84 divergent transcript ncRNA 318-354 chr3 64709011 64709195 + 2 NA intron (NR_038264, intron 1 of 5) intron (NR_038264, intron 1 of 5) -21103 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 332-252 chr2 80178130 80178408 + 2 NA intron (NM_001282598, intron 7 of 17) HERVL-int|LTR|ERVL 126483 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 351-401 chr5 150915392 150915586 + 2 NA Intergenic HERVK22-int|LTR|ERVK -10506 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 298-362 chr5 43737572 43737789 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -134450 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 221-164 chr20 46969470 46969621 + 2 NA intron (NM_172110, intron 1 of 13) (TGTTTT)n|Simple_repeat|Simple_repeat 74702 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 355-2 chr1 26042532 26042764 + 2 NA exon (NM_001004434, exon 5 of 8) exon (NM_001004434, exon 5 of 8) 3470 NM_001004434 7780 Hs.143545 NM_032513 ENSG00000158014 SLC30A2 PP12488|TNZD|ZNT2|ZnT-2 solute carrier family 30 member 2 protein-coding 306-113 chr12 94398080 94398298 + 2 NA intron (NM_001368042, intron 3 of 5) Tigger5|DNA|TcMar-Tigger 61678 NM_001346457 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 399-109 chr16 55998297 55998559 + 2 NA Intergenic L1MA5A|LINE|L1 -42397 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 511-221 chr6 39584678 39585030 + 2 NA intron (NM_001289020, intron 9 of 21) intron (NM_001289020, intron 9 of 21) 140554 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 153-19 chr11 72347483 72347604 + 2 NA intron (NM_030813, intron 6 of 16) intron (NM_030813, intron 6 of 16) 86988 NM_001258392 81570 Hs.523877 NM_030813 ENSG00000162129 CLPB ANKCLB|HSP78|MEGCANN|MGCA7|SKD3 ClpB homolog, mitochondrial AAA ATPase chaperonin protein-coding 519-108 chr2 83096895 83097313 + 2 NA Intergenic L1MEc|LINE|L1 240301 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 229-384 chr8 62585736 62585957 + 2 NA intron (NM_001304533, intron 2 of 6) intron (NM_001304533, intron 2 of 6) 336992 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 289-279 chr21 31851373 31851598 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -21535 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 425-247 chr5 162162995 162163237 + 2 NA Intergenic Intergenic 95474 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 343-263 chr2 118625555 118625774 + 2 NA Intergenic L1ME2|LINE|L1 -22698 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 364-91 chr11 79626810 79627004 + 2 NA Intergenic Intergenic -185877 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 331-495 chr7 52083791 52083978 + 2 NA Intergenic Intergenic -690628 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 341-210 chr18 64332897 64333098 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -72942 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 214-51 chr10 108402636 108402790 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -333420 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 217-281 chr5 6169954 6170115 + 2 NA Intergenic L1MA8|LINE|L1 167258 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 425-17 chr1 190409790 190410148 + 2 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 66041 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 213-62 chr11 111586209 111586346 + 2 NA Intergenic Intergenic -16172 NM_015191 23235 Hs.269128 NM_015191 ENSG00000170145 SIK2 LOH11CR1I|QIK|SIK-2|SNF1LK2 salt inducible kinase 2 protein-coding 236-69 chr11 37521458 37521637 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -417054 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 633-23 chr11 84195124 84195743 + 2 NA intron (NM_001142700, intron 1 of 19) AluSc|SINE|Alu 77847 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 487-168 chr21 25653249 25653688 + 2 NA intron (NR_072999, intron 1 of 9) THE1D|LTR|ERVL-MaLR 14186 NM_001270407 58494 Hs.517227 NM_021219 ENSG00000154721 JAM2 C21orf43|CD322|JAM-B|JAMB|PRO245|VE-JAM|VEJAM junctional adhesion molecule 2 protein-coding 326-397 chr5 13465495 13465670 + 2 NA Intergenic L1M4|LINE|L1 -432696 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 261-336 chr6 67668530 67668717 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -386728 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 252-283 chr3 186741940 186742163 + 2 NA exon (NM_001102416, exon 10 of 10) exon (NM_001102416, exon 10 of 10) 24692 NM_001102416 3827 Hs.77741 NM_000893 ENSG00000113889 KNG1 BDK|BK|HMWK|KNG kininogen 1 protein-coding 143-59 chr4 46139674 46139757 + 2 NA Intergenic Intergenic -15661 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 176-43 chr17 60888337 60888500 + 2 NA intron (NM_001330413, intron 9 of 25) intron (NM_001330413, intron 9 of 25) 210567 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 183-172 chr9 94477950 94478082 + 2 NA Intergenic L1M1|LINE|L1 -77029 NR_121568 101928099 Hs.674409 NR_121566 PCAT7 PCAN-R2 prostate cancer associated transcript 7 ncRNA 800-35 chr21 28311955 28312616 + 2 NA Intergenic L1M4|LINE|L1 -83618 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 298-191 chr19 44491352 44491635 + 2 NA intron (NM_001288760, intron 3 of 6) intron (NM_001288760, intron 3 of 6) 9029 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 320-528 chr8 15309182 15309360 + 2 NA Intergenic Intergenic -70840 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 376-275 chr4 45111695 45112020 + 2 NA Intergenic L1ME3B|LINE|L1 -385223 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 292-396 chr7 7454252 7454502 + 2 NA intron (NM_001037763, intron 16 of 34) intron (NM_001037763, intron 16 of 34) 81496 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 352-294 chr21 19627435 19627708 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 272184 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 323-61 chr10 76487810 76488001 + 2 NA intron (NM_001305581, intron 6 of 6) MIRb|SINE|MIR -400139 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 149-41 chr17 28863310 28863427 + 2 NA Intergenic Intergenic -1638 NR_039885 100616385 NR_039885 ENSG00000284085 MIR4732 mir-4732 microRNA 4732 ncRNA 295-125 chr14 45819821 45820064 + 2 NA Intergenic SATR1|Satellite|Satellite -104340 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 334-487 chr7 11331490 11331789 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 357767 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 557-55 chr15 36946117 36946496 + 2 NA intron (NR_051953, intron 8 of 11) intron (NR_051953, intron 8 of 11) 26595 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 320-185 chr16 14027313 14027619 + 2 NA Intergenic L1MD2|LINE|L1 -6389 NR_110915 101927348 Hs.569621 NR_110915 ENSG00000261856 LINC02186 - long intergenic non-protein coding RNA 2186 ncRNA 225-191 chr22 34541884 34542041 + 2 NA Intergenic L1ME1|LINE|L1 455954 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 817-31 chr22 17354973 17355537 + 2 NA Intergenic AluSq2|SINE|Alu -4694 NM_001290046 27443 Hs.231895 NM_031413 ENSG00000099954 CECR2 - CECR2 histone acetyl-lysine reader protein-coding 519-179 chr5 89636729 89637196 + 2 NA Intergenic L1MC1|LINE|L1 379758 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 256-351 chr6 16443132 16443346 + 2 NA intron (NM_000332, intron 7 of 8) intron (NM_000332, intron 7 of 8) 204652 NM_006877 2766 Hs.484741 NM_006877 ENSG00000137198 GMPR GMPR 1|GMPR1 guanosine monophosphate reductase protein-coding 254-264 chr4 18989019 18989269 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -967269 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 316-128 chr12 37888677 37888957 + 2 NA Intergenic ALR/Alpha|Satellite|centr -427957 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 215-17 chr1 196136921 196137094 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -48292 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 258-329 chr5 108490031 108490216 + 2 NA Intergenic L1MA4|LINE|L1 -108025 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 822-48 chr5 125708389 125708885 + 2 NA Intergenic L2a|LINE|L2 215376 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 400-318 chr7 28464670 28464917 + 2 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 29178 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 218-179 chr2 186204744 186204925 + 2 NA Intergenic Intergenic -118517 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 415-70 chr14 45334406 45334618 + 2 NA Intergenic AluSq2|SINE|Alu -81310 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 343-450 chr5 151565117 151565410 + 2 NA intron (NM_001447, intron 1 of 22) L1ME4b|LINE|L1 3681 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 161-10 chr10 61125828 61125957 + 2 NA Intergenic Intergenic 109617 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 392-289 chr6 140766435 140766696 + 2 NA Intergenic Intergenic 82751 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 354-320 chr4 43224075 43224419 + 2 NA Intergenic Intergenic 268296 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 216-56 chr11 41713435 41713592 + 2 NA Intergenic LTR53|LTR|ERVL -1055 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 327-428 chr5 179044027 179044281 + 2 NA Intergenic AluY|SINE|Alu -16219 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 241-262 chr4 42967917 42968116 + 2 NA intron (NM_001080476, intron 2 of 3) L1MEc|LINE|L1 74750 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 581 chr1 78793351 78793776 + 2 NA Intergenic Intergenic 143732 NM_006417 10561 Hs.82316 NM_006417 ENSG00000137965 IFI44 MTAP44|TLDC5|p44 interferon induced protein 44 protein-coding 374-133 chr16 79120702 79120937 + 2 NA intron (NM_001291997, intron 7 of 7) AluSx|SINE|Alu 479918 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 233-268 chr4 99381374 99381505 + 2 NA Intergenic Intergenic -28693 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 583-14 chr10 20895570 20895923 + 2 NA intron (NM_006393, intron 2 of 27) intron (NM_006393, intron 2 of 27) 1856 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 235-305 chr6 54324946 54325098 + 2 NA intron (NM_014464, intron 3 of 10) intron (NM_014464, intron 3 of 10) 16581 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 280-96 chr12 86260455 86260691 + 2 NA intron (NM_001351286, intron 4 of 7) intron (NM_001351286, intron 4 of 7) -3274 NM_001351287 25834 Hs.589093 NM_013244 ENSG00000182050 MGAT4C GNTIVH|HGNT-IV-H MGAT4 family member C protein-coding 207-310 chr9 27298454 27298637 + 2 NA Intergenic L1PB3|LINE|L1 -1395 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 218-209 chr3 34647482 34647607 + 2 NA Intergenic Intergenic 746479 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 247-250 chr3 3734654 3734894 + 2 NA intron (NR_149025, intron 5 of 5) L1MB3|LINE|L1 -64657 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 268-150 chr17 58951971 58952145 + 2 NA intron (NM_014906, intron 1 of 6) L1M2c|LINE|L1 154822 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 391-144 chr18 10138486 10138732 + 2 NA Intergenic Intergenic 224593 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 253-263 chr3 88857920 88858071 + 2 NA Intergenic Intergenic -249626 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 285-10 chr1 89193885 89194098 + 2 NA intron (NM_052941, intron 3 of 10) intron (NM_052941, intron 3 of 10) 4951 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 194-147 chr4 69577257 69577417 + 2 NA Intergenic Intergenic -51323 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 280-363 chr6 148046722 148046919 + 2 NA Intergenic L1MEd|LINE|L1 -225508 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 490-141 chr2 59096730 59097070 + 2 NA Intergenic Intergenic -120808 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 279-243 chr3 7494811 7494972 + 2 NA intron (NM_000844, intron 7 of 9) L1MDb|LINE|L1 40393 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 427-281 chr9 93364215 93364564 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -17975 NM_001098808 445577 Hs.575636 NM_001098808 ENSG00000204352 C9orf129 bA165J3.3 chromosome 9 open reading frame 129 protein-coding 280-243 chr22 27380986 27381226 + 2 NA Intergenic Intergenic 70455 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 135-30 chr19 37769359 37769449 + 2 NA intron (NM_152360, intron 5 of 7) intron (NM_152360, intron 5 of 7) 10186 NM_001172692 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 245-129 chr14 70672995 70673165 + 2 NA 3' UTR (NM_015351, exon 3 of 3) 3' UTR (NM_015351, exon 3 of 3) -25618 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 301-443 chr8 56491120 56491397 + 2 NA intron (NR_125813, intron 1 of 3) intron (NR_125813, intron 1 of 3) -44617 NM_001135690 5179 Hs.339831 NM_006211 ENSG00000181195 PENK PE|PENK-A proenkephalin protein-coding 429-310 chr8 122502958 122503359 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 65486 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 338-543 chr8 89337638 89337889 + 2 NA Intergenic L1MA2|LINE|L1 419948 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 274-150 chr16 17597792 17598023 + 2 NA Intergenic Intergenic -126947 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 215-152 chr2 102946885 102947018 + 2 NA Intergenic Intergenic 37478 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 154-11 chr10 15685213 15685350 + 2 NA intron (NM_001291494, intron 3 of 28) intron (NM_001291494, intron 3 of 28) 34641 NM_003638 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 370-478 chr9 85412790 85412988 + 2 NA Intergenic AluSz|SINE|Alu 329140 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 277-189 chr2 56919568 56919806 + 2 NA Intergenic Intergenic -733917 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 316-522 chr7 79576471 79576762 + 2 NA Intergenic Intergenic 122656 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 722-33 chr15 57231489 57232034 + 2 NA intron (NM_001306220, intron 2 of 11) intron (NM_001306220, intron 2 of 11) 12331 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 386-296 chr5 85366371 85366632 + 2 NA Intergenic L1MA6|LINE|L1 -915943 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 324-346 chr3 69491676 69491868 + 2 NA Intergenic Intergenic -105684 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 353-548 chr8 142443511 142443705 + 2 NA Intergenic Intergenic -6041 NM_001702 575 Hs.194654 NM_001702 ENSG00000181790 ADGRB1 BAI1|GDAIF adhesion G protein-coupled receptor B1 protein-coding 453-299 chr9 34185914 34186322 + 2 NA intron (NM_001171201, intron 1 of 5) intron (NM_001171201, intron 1 of 5) 7075 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 393-284 chr5 117296602 117296908 + 2 NA Intergenic Intergenic -118757 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 121-25 chr2 38499294 38499357 + 2 NA intron (NR_110259, intron 1 of 4) intron (NR_110259, intron 1 of 4) 16415 NR_110259 101929596 Hs.537341 NR_110259 LINC02613 - long intergenic non-protein coding RNA 2613 ncRNA 268-276 chr4 59000002 59000257 + 2 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) -11975 NR_133940 105377245 Hs.112674 NR_133939 ENSG00000249382 LINC02619 - long intergenic non-protein coding RNA 2619 ncRNA 220-113 chr15 38856000 38856171 + 2 NA Intergenic Intergenic 159487 NR_160786 497-182 chr3 104229429 104229917 + 2 NA Intergenic Intergenic -705557 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 200-17 chr1 191849524 191849690 + 2 NA Intergenic L1PB1|LINE|L1 -308855 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 257-269 chr3 81178878 81179050 + 2 NA Intergenic Intergenic 185096 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 275-248 chr3 103609186 103609378 + 2 NA Intergenic Intergenic -85166 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 337-526 chr7 93400485 93400736 + 2 NA Intergenic Intergenic 82245 NR_030388 724023 NR_030388 ENSG00000208014 MIR653 MIRN653|hsa-mir-653|mir-653 microRNA 653 ncRNA 140-32 chr18 6432849 6432960 + 2 NA Intergenic Intergenic -17645 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 223-295 chr5 175039855 175040028 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR -44210 NR_046113 441116 Hs.533036 NM_001004348 ENSG00000204754 LINC01951 - long intergenic non-protein coding RNA 1951 ncRNA 545-169 chr4 180644772 180645257 + 2 NA Intergenic Intergenic 514135 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 243-288 chr3 89791479 89791673 + 2 NA Intergenic Intergenic 683955 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 562-47 chr12 52919675 52920147 + 2 NA intron (NM_001256293, intron 1 of 8) AluSx|SINE|Alu 6558 NM_001256282 3856 Hs.533782 NM_002273 ENSG00000170421 KRT8 CARD2|CK-8|CK8|CYK8|K2C8|K8|KO keratin 8 protein-coding 461-233 chr6 65353424 65353713 + 2 NA exon (NM_001142801, exon 9 of 12) exon (NM_001142801, exon 9 of 12) 52150 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 254-301 chr5 26486375 26486576 + 2 NA Intergenic Intergenic 552111 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 252-206 chr2 107471898 107472137 + 2 NA Intergenic L1MC4|LINE|L1 -57402 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 367-247 chr20 13675424 13675619 + 2 NA Intergenic Intergenic -36585 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 412-284 chr6 99611806 99612123 + 2 NA intron (NM_021620, intron 3 of 3) intron (NM_021620, intron 3 of 3) 5190 NM_021620 59336 Hs.287386 NM_021620 ENSG00000112238 PRDM13 MU-MB-20.220|PFM10 PR/SET domain 13 protein-coding 157-42 chr15 66449198 66449310 + 2 NA intron (NM_002755, intron 5 of 10) L1ME1|LINE|L1 47780 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 323-319 chr3 18065820 18066105 + 2 NA intron (NR_161333, intron 4 of 4) intron (NR_161333, intron 4 of 4) 103410 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 504-217 chr5 118190884 118191236 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) -91514 NR_104609 100505811 Hs.369776 NR_104609 ENSG00000250427 LINC02148 HNCAT21 long intergenic non-protein coding RNA 2148 ncRNA 368-392 chr6 53166080 53166386 + 2 NA Intergenic L1PA17|LINE|L1 -17392 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 316-21 chr1 112120442 112120697 + 2 NA Intergenic L1PA14|LINE|L1 130033 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 447-170 chr3 61061650 61062040 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 189607 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 262-251 chr20 42670341 42670554 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -15036 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 463-84 chr13 107569627 107569988 + 2 NA intron (NM_001080396, intron 1 of 2) L1MD2|LINE|L1 -38559 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 302-298 chr3 136969908 136970127 + 2 NA intron (NM_144717, intron 1 of 6) L1MA4A|LINE|L1 12034 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 335-401 chr4 167741792 167742065 + 2 NA Intergenic Intergenic -350609 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 693-36 chr15 27630582 27631140 + 2 NA Intergenic Intergenic 468454 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 198-28 chr10 99035111 99035235 + 2 NA intron (NM_021828, intron 3 of 11) Tigger3b|DNA|TcMar-Tigger -110605 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 391-342 chr8 55524659 55525022 + 2 NA 3' UTR (NM_052898, exon 3 of 3) 3' UTR (NM_052898, exon 3 of 3) -3862 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 302-439 chr8 50553243 50553516 + 2 NA intron (NR_135795, intron 12 of 18) intron (NR_135795, intron 12 of 18) 389248 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 520-38 chr10 95834095 95834520 + 2 NA intron (NM_001164183, intron 2 of 7) L2a|LINE|L2 -73658 NM_001349008 387707 Hs.652240 NM_001001732 ENSG00000188649 CC2D2B C10orf130|C10orf131 coiled-coil and C2 domain containing 2B protein-coding 327-37 chr10 22378806 22379028 + 2 NA intron (NM_172242, intron 4 of 9) intron (NM_172242, intron 4 of 9) 33421 NM_172242 9576 Hs.655170 NM_012443 ENSG00000077327 SPAG6 CT141|Repro-SA-1|pf16 sperm associated antigen 6 protein-coding 322-76 chr10 95513887 95514104 + 2 NA intron (NM_001290295, intron 1 of 24) intron (NM_001290295, intron 1 of 24) 47376 NM_001290294 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 219-303 chr6 12415409 12415594 + 2 NA Intergenic Intergenic 125140 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 262-220 chr2 123120371 123120538 + 2 NA Intergenic L1PA16|LINE|L1 -46973 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 381-415 chrX 77564051 77564267 + 2 NA intron (NM_000489, intron 28 of 34) MLT2B2|LTR|ERVL 116770 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 172-66 chr2 188355959 188356115 + 2 NA intron (NR_045563, intron 2 of 12) L1MA5|LINE|L1 58545 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 617-125 chr8 13773315 13773842 + 2 NA Intergenic L1MEg|LINE|L1 143888 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 333-471 chr5 123711067 123711243 + 2 NA Intergenic L1M4|LINE|L1 165738 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 364-135 chr14 83038475 83038756 + 2 NA Intergenic Intergenic 395983 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 305-280 chr2 160796596 160796753 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -302867 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 344-23 chr1 159323188 159323372 + 2 NA Intergenic L1MEg|LINE|L1 -8621 NM_001004467 441911 Hs.553833 NM_001004467 ENSG00000196266 OR10J3 OR1-25|OR10J3P olfactory receptor family 10 subfamily J member 3 protein-coding 418-253 chr7 17265600 17265929 + 2 NA Intergenic L1M2|LINE|L1 -32888 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 500-263 chr7 12454994 12455337 + 2 NA Intergenic Intergenic -41264 NR_136261 102725191 Hs.602382 NR_136261 ENSG00000226690 LOC102725191 - uncharacterized LOC102725191 ncRNA 526-48 chr11 87539766 87540037 + 2 NA Intergenic Intergenic 179510 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 200-215 chr5 55121271 55121428 + 2 NA intron (NM_152623, intron 9 of 11) L1ME4c|LINE|L1 18703 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 278-11 chr1 107029352 107029546 + 2 NA Intergenic L2a|LINE|L2 -27225 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 238-40 chr10 53538385 53538568 + 2 NA Intergenic Intergenic -766776 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 201-248 chr8 130267267 130267421 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) 29189 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 252-467 chrX 146200323 146200565 + 2 NA Intergenic Intergenic -172572 NR_030581 100126341 NR_030581 ENSG00000216056 MIR891A MIRN891A microRNA 891a ncRNA 302-382 chr6 64734111 64734297 + 2 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -567214 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 267-325 chr5 30291360 30291577 + 2 NA Intergenic Intergenic 410908 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 318-130 chr12 18969598 18969808 + 2 NA Intergenic Intergenic -160030 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 279-429 chr8 135497320 135497512 + 2 NA intron (NM_006558, intron 1 of 8) intron (NM_006558, intron 1 of 8) 39960 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 211-261 chr6 131799191 131799384 + 2 NA Intergenic L1ME1|LINE|L1 7115 NR_039610 100616455 NR_039610 ENSG00000266807 MIR548H5 - microRNA 548h-5 ncRNA 198-125 chr2 102038206 102038352 + 2 NA Intergenic Intergenic -32111 NM_001320978 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 236-47 chr10 67651119 67651279 + 2 NA intron (NM_001291133, intron 1 of 8) intron (NM_001291133, intron 1 of 8) 14461 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 472-318 chr8 98976985 98977340 + 2 NA Intergenic Intergenic 32720 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 168-47 chr19 28268917 28269019 + 2 NA Intergenic L1MEc|LINE|L1 -337720 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 671-96 chr7 141406000 141406554 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -145133 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 255-275 chr3 176259704 176259919 + 2 NA Intergenic L1MA7|LINE|L1 15260 NR_031687 100302204 NR_031687 ENSG00000221737 MIR548I1 MIR548I-1|MIRN548I1|hsa-mir-548i-1|mir-548i-1 microRNA 548i-1 ncRNA 278-91 chr13 70699369 70699538 + 2 NA Intergenic Intergenic -315688 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 420-70 chr12 118738721 118739037 + 2 NA Intergenic MIRb|SINE|MIR 22800 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 581-133 chr5 33103382 33103860 + 2 NA Intergenic L1PA15-16|LINE|L1 -126114 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 280-182 chr2 5315854 5316082 + 2 NA Intergenic Intergenic 375150 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 376-370 chr7 36901420 36901644 + 2 NA intron (NM_001206480, intron 16 of 21) MER58A|DNA|hAT-Charlie 17900 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 492-40 chr11 67223461 67223941 + 2 NA intron (NR_027473, intron 10 of 20) AluJb|SINE|Alu -16313 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 392-18 chr1 247158488 247158719 + 2 NA intron (NM_001297568, intron 3 of 3) intron (NM_001297568, intron 3 of 3) 13414 NM_003431 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 212-29 chr10 15049924 15050076 + 2 NA intron (NM_001039702, intron 3 of 7) L1MC5a|LINE|L1 6057 NM_001039702 55301 Hs.24309 NM_018324 ENSG00000152463 OLAH AURA1|SAST|TE2|THEDC1 oleoyl-ACP hydrolase protein-coding 301-171 chr18 4124075 4124355 + 2 NA intron (NM_001242761, intron 2 of 11) MER34|LTR|ERV1 -140387 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 605-37 chr16 72000632 72001129 + 2 NA promoter-TSS (NM_181536) promoter-TSS (NM_181536) -902 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 370-343 chr4 59858231 59858488 + 2 NA Intergenic Intergenic 844786 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 265-424 chrX 93266263 93266456 + 2 NA Intergenic Intergenic 407219 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 506-200 chr4 35129513 35129976 + 2 NA Intergenic Intergenic -859997 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 431-222 chr5 42350203 42350460 + 2 NA Intergenic L1MA9|LINE|L1 -73108 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 477-67 chr12 2017057 2017356 + 2 NA Intergenic Intergenic -12671 NR_135060 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 304-382 chr4 89150412 89150697 + 2 NA Intergenic Intergenic 37737 NM_145715 166815 Hs.58924 NM_145715 ENSG00000180346 TIGD2 HEL106 tigger transposable element derived 2 protein-coding 705-37 chr16 8386215 8386911 + 2 NA Intergenic Intergenic 203275 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 230-18 chr1 151736860 151737022 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 15419 NM_001144956 284485 Hs.297967 NM_001144956 ENSG00000178796 RIIAD1 C1orf230|NCRNA00166 regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1 protein-coding 433-306 chr9 107112836 107113204 + 2 NA Intergenic Intergenic -10032 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 210-106 chr18 40564814 40564958 + 2 NA Intergenic Intergenic 498600 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 528-119 chr19 37699011 37699379 + 2 NA exon (NM_032689, exon 5 of 5) exon (NM_032689, exon 5 of 5) -6880 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 520-229 chr5 35290228 35290701 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -59977 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 232-140 chr18 7912720 7912890 + 2 NA intron (NM_002845, intron 4 of 30) AluY|SINE|Alu 345489 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 326-317 chr22 44214914 44215197 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 34130 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 141-10 chr10 53942228 53942322 + 2 NA intron (NM_001354411, intron 24 of 34) intron (NM_001354411, intron 24 of 34) -543955 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 133-42 chr21 23349145 23349219 + 2 NA Intergenic Intergenic 35653 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 230-349 chr7 47769993 47770186 + 2 NA Intergenic L1ME3Cz|LINE|L1 8613 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 341-46 chr1 229541640 229541871 + 2 NA intron (NM_012089, intron 4 of 12) AluJb|SINE|Alu 16952 NM_012089 23456 Hs.17614 NM_012089 ENSG00000135776 ABCB10 EST20237|M-ABC2|MTABC2 ATP binding cassette subfamily B member 10 protein-coding 276-165 chr15 67475080 67475354 + 2 NA intron (NR_040051, intron 2 of 5) AluJo|SINE|Alu 45756 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 544-74 chr15 40532862 40533251 + 2 NA promoter-TSS (NR_002208) promoter-TSS (NR_002208) -506 NR_002208 359821 Hs.678598 NR_002208 MRPL42P5 - mitochondrial ribosomal protein L42 pseudogene 5 pseudo 293-240 chr21 29500414 29500651 + 2 NA TTS (NR_146594) TTS (NR_146594) 4485 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 324-468 chr6 80847158 80847397 + 2 NA Intergenic L1M3e|LINE|L1 740606 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 216-88 chr14 21145343 21145499 + 2 NA Intergenic L1M3|LINE|L1 10642 NM_001004731 390445 Hs.553768 NM_001004731 ENSG00000169327 OR5AU1 OR14-38 olfactory receptor family 5 subfamily AU member 1 protein-coding 370-447 chr8 121022285 121022512 + 2 NA Intergenic Intergenic -210352 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 286-149 chr16 26464457 26464623 + 2 NA Intergenic L1PBa1|LINE|L1 439303 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 250-316 chr4 95927204 95927399 + 2 NA Intergenic MER4-int|LTR|ERV1 87208 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 170-22 chr10 101870198 101870330 + 2 NA intron (NM_024541, intron 24 of 25) L1ME2|LINE|L1 -26344 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 239-181 chr2 118690142 118690323 + 2 NA Intergenic Intergenic -87266 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 480-250 chr6 51395328 51395671 + 2 NA Intergenic Intergenic -226371 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 354-59 chr10 106274765 106275037 + 2 NA Intergenic Intergenic 134736 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 229-370 chr7 112833392 112833522 + 2 NA intron (NM_152556, intron 3 of 4) MIR|SINE|MIR -43034 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 435-49 chr11 28508372 28508589 + 2 NA Intergenic Intergenic -30932 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 342-87 chr11 21803483 21803800 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -389444 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 278-160 chr17 69376027 69376255 + 2 NA Intergenic Intergenic -38556 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 334-63 chr10 77155290 77155551 + 2 NA intron (NM_001271519, intron 5 of 28) MIR|SINE|MIR 14589 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 231-115 chr16 26243889 26244055 + 2 NA Intergenic L1MA1|LINE|L1 218735 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 269-76 chr11 109842615 109842773 + 2 NA Intergenic L1ME1|LINE|L1 -250698 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 512-81 chr14 84273357 84273724 + 2 NA Intergenic Intergenic -998392 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 272-460 chr8 122480622 122480829 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 87919 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 533-115 chr2 229424225 229424671 + 2 NA intron (NM_139072, intron 8 of 12) MLT1B|LTR|ERVL-MaLR -153161 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 214-18 chr1 99555353 99555522 + 2 NA intron (NR_031666, intron 1 of 4) L1PB3|LINE|L1 -67633 NR_125951 101928270 Hs.576048 NR_125951 ENSG00000224445 LINC01708 - long intergenic non-protein coding RNA 1708 ncRNA 317-270 chr20 7480950 7481228 + 2 NA Intergenic Intergenic 109481 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 470-10 chr1 169097984 169098336 + 2 NA Intergenic AluJb|SINE|Alu -5964 NR_135799 101928596 Hs.308463 NR_135799 ENSG00000237707 LOC101928596 - uncharacterized LOC101928596 ncRNA 319-485 chr6 167660024 167660192 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 19115 NR_117091 401286 Hs.487182 NR_117091 ENSG00000272549 LINC02538 - long intergenic non-protein coding RNA 2538 ncRNA 536-254 chr9 137361019 137361389 + 2 NA intron (NM_017820, intron 7 of 21) L1MEc|LINE|L1 -58933 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 608-33 chr12 111085137 111085706 + 2 NA intron (NM_015267, intron 1 of 21) L2a|LINE|L2 -14583 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 398-69 chr12 23639121 23639449 + 2 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -54699 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 526-125 chr2 80395027 80395412 + 2 NA intron (NM_001282599, intron 2 of 11) intron (NM_001282599, intron 2 of 11) 81840 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 261-407 chr9 25158448 25158700 + 2 NA Intergenic Intergenic 520284 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 287-7 chr1 48370761 48370966 + 2 NA intron (NM_019073, intron 9 of 12) L1MEd|LINE|L1 101341 NM_001286238 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 267-291 chr4 59348900 59349108 + 2 NA Intergenic MLT2B1|LTR|ERVL 335431 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 503-290 chr8 127603610 127604072 + 2 NA Intergenic AluSx|SINE|Alu -121702 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 194-4 chr1 33434431 33434571 + 2 NA Intergenic MIRb|SINE|MIR -38144 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 284-329 chr5 119835877 119836152 + 2 NA Intergenic Intergenic 206455 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 302-356 chr5 125525625 125525811 + 2 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 32457 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 236-346 chr8 41816775 41816984 + 2 NA intron (NM_001142446, intron 1 of 42) LTR57-int|LTR|ERVL -19257 NM_020477 286 Hs.654438 NM_000037 ENSG00000029534 ANK1 ANK|SPH1|SPH2 ankyrin 1 protein-coding 426-65 chr12 128773676 128774012 + 2 NA Intergenic AluSz|SINE|Alu 50114 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 130-29 chr16 53840241 53840340 + 2 NA intron (NM_001363899, intron 3 of 7) intron (NM_001363899, intron 3 of 7) 136134 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 455-258 chr7 55900325 55900672 + 2 NA intron (NM_182633, intron 1 of 6) L1MA7|LINE|L1 13042 NM_182633 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 532-154 chr3 3206628 3207103 + 2 NA Intergenic MIRc|SINE|MIR -27148 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 323-433 chr5 141418219 141418443 + 2 NA exon (NM_032101, exon 1 of 1) exon (NM_032101, exon 1 of 1) 654 NM_032101 56099 Hs.368160 NM_018927 ENSG00000254122 PCDHGB7 ME6|PCDH-GAMMA-B7 protocadherin gamma subfamily B, 7 protein-coding 316-181 chr15 37948621 37948843 + 2 NA intron (NM_001370737, intron 11 of 13) intron (NM_001370737, intron 11 of 13) 14090 NM_001370736 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 248-332 chr5 155508271 155508422 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie 494591 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 277-262 chr3 95580908 95581160 + 2 NA Intergenic (ATAA)n|Simple_repeat|Simple_repeat 102159 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 616-100 chr22 40872889 40873421 + 2 NA intron (NM_022098, intron 2 of 9) AluSx4|SINE|Alu -11042 NM_145174 150353 Hs.585042 NM_145174 ENSG00000172404 DNAJB7 DJ5|HSC3 DnaJ heat shock protein family (Hsp40) member B7 protein-coding 385-376 chr8 47964275 47964616 + 2 NA intron (NM_182746, intron 7 of 16) intron (NM_182746, intron 7 of 16) 3504 NM_005914 4173 Hs.460184 NM_005914 ENSG00000104738 MCM4 CDC21|CDC54|IMD54|NKCD|NKGCD|P1-CDC21|hCdc21 minichromosome maintenance complex component 4 protein-coding 239-444 chrX 66327928 66328126 + 2 NA Intergenic MIRb|SINE|MIR 160277 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 267-55 chr10 83606785 83606982 + 2 NA Intergenic Intergenic 70206 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 342-551 chr9 32906360 32906543 + 2 NA Intergenic LTR12D|LTR|ERV1 95125 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 211-14 chr1 173025044 173025195 + 2 NA Intergenic Intergenic 25844 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 315-490 chr8 118570859 118571032 + 2 NA intron (NM_001101676, intron 2 of 4) THE1B|LTR|ERVL-MaLR -50056 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 545-233 chr8 53160166 53160641 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 91234 NM_001318497 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 417-34 chr10 59972909 59973172 + 2 NA Intergenic L2a|LINE|L2 -12127 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 282-186 chr19 36813232 36813461 + 2 NA intron (NR_040028, intron 2 of 3) L1ME3G|LINE|L1 15783 NR_040028 284408 Hs.570010 NR_040027 ENSG00000267254 ZNF790-AS1 - ZNF790 antisense RNA 1 ncRNA 259-74 chr11 83561023 83561191 + 2 NA intron (NM_001142699, intron 19 of 27) MSTA|LTR|ERVL-MaLR 121318 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 126-49 chr5 7124289 7124372 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 145024 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 296-165 chr16 4060910 4061080 + 2 NA intron (NM_001116, intron 2 of 10) L1M4a2|LINE|L1 55447 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 256-163 chr17 53048756 53048926 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 63336 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 463-313 chrX 10942354 10942773 + 2 NA Intergenic Intergenic -108880 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 253-245 chr3 5791837 5792003 + 2 NA Intergenic L2a|LINE|L2 -541665 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 557-143 chr4 72453 72819 + 2 NA intron (NM_182524, intron 3 of 3) intron (NM_182524, intron 3 of 3) 19315 NM_182524 152687 Hs.709469 NM_182524 ENSG00000272602 ZNF595 - zinc finger protein 595 protein-coding 292-386 chr6 144858797 144858960 + 2 NA Intergenic MER110-int|LTR|ERV1 453223 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 313-99 chr11 132901896 132902198 + 2 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 41590 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 356-273 chr2 199783163 199783368 + 2 NA intron (NM_001350855, intron 3 of 3) HERV16-int|LTR|ERVL 67908 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 124-28 chr15 58993898 58993968 + 2 NA intron (NM_001270530, intron 1 of 13) intron (NM_001270530, intron 1 of 13) 5787 NM_001270530 54778 Hs.404423 NM_017610 ENSG00000157450 RNF111 ARK|hRNF111 ring finger protein 111 protein-coding 457-89 chr17 52340462 52340718 + 2 NA Intergenic L1MA1|LINE|L1 -49932 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 230-283 chr5 2636067 2636251 + 2 NA Intergenic Intergenic -76432 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 342-360 chr4 61776502 61776727 + 2 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 385151 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 295-283 chr3 12098404 12098588 + 2 NA intron (NM_133625, intron 1 of 12) L1MB7|LINE|L1 60416 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 363-268 chr21 20300767 20301031 + 2 NA Intergenic Intergenic -42214 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 187-124 chr3 190717145 190717292 + 2 NA Intergenic Intergenic 145476 NM_001146686 647309 Hs.518490 NM_001146686 ENSG00000205835 GMNC GEMC1 geminin coiled-coil domain containing protein-coding 175-106 chr3 197368203 197368363 + 2 NA Intergenic Intergenic -68962 NM_001366203 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 339-414 chr4 80667652 80667941 + 2 NA intron (NM_001206997, intron 4 of 6) L1MA4|LINE|L1 332076 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 262-337 chr5 16233662 16233884 + 2 NA Intergenic Intergenic 53532 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 354-49 chr10 52867906 52868237 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -96371 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 434-5 chr1 42587731 42587999 + 2 NA intron (NM_001080850, intron 9 of 16) LOR1b|LTR|ERV1 54845 NM_001080850 728621 Hs.729640 NM_001080850 ENSG00000186409 CCDC30 PFD6L|PFDN6L coiled-coil domain containing 30 protein-coding 300-388 chr6 62419343 62419620 + 2 NA Intergenic AluSx|SINE|Alu -133254 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 635-62 chr20 52730514 52730932 + 2 NA Intergenic Intergenic 109885 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 365-14 chr1 102705913 102706229 + 2 NA Intergenic Intergenic 402425 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 481-185 chr21 33672895 33673336 + 2 NA intron (NM_001001132, intron 1 of 29) L1MA9|LINE|L1 30614 NM_001331010 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 414-221 chr3 167577656 167577916 + 2 NA intron (NM_001348951, intron 7 of 18) intron (NM_001348951, intron 7 of 18) 76156 NM_001366157 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 274-76 chr11 79889542 79889771 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -448626 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 349-401 chr5 6443885 6444117 + 2 NA Intergenic MIR|SINE|MIR -4858 NM_001145161 134111 Hs.126856 NM_001145161 ENSG00000215218 UBE2QL1 - ubiquitin conjugating enzyme E2 Q family like 1 protein-coding 335-325 chr22 34062473 34062679 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -139688 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 352-22 chr1 163727381 163727682 + 2 NA Intergenic L1ME3E|LINE|L1 -304340 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 203-87 chr17 70692637 70692769 + 2 NA Intergenic Intergenic 509476 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 200-124 chr2 37371693 37371891 + 2 NA intron (NM_012413, intron 5 of 6) MER5A|DNA|hAT-Charlie 27162 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 225-113 chr16 35692360 35692577 + 2 NA Intergenic Intergenic -54084 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 334-305 chr20 8699334 8699585 + 2 NA intron (NM_182734, intron 11 of 32) L2|LINE|L2 -131726 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 382-425 chr8 134526756 134527054 + 2 NA intron (NM_020863, intron 12 of 15) intron (NM_020863, intron 12 of 15) -71166 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 326-328 chr3 31027912 31028123 + 2 NA Intergenic Intergenic -133356 NM_207359 339896 Hs.657052 NM_207359 ENSG00000144644 GADL1 ADC|CSADC|HuADC|HuCSADC glutamate decarboxylase like 1 protein-coding 292-268 chr22 30541676 30541947 + 2 NA intron (NM_001193336, intron 1 of 11) AluJr|SINE|Alu 843 NM_001353441 730005 Hs.505605 NM_001193336 ENSG00000214491 SEC14L6 - SEC14 like lipid binding 6 protein-coding 339-486 chr6 27349242 27349497 + 2 NA Intergenic L1MA4|LINE|L1 22156 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 250-87 chr12 33174539 33174769 + 2 NA Intergenic L1MCa|LINE|L1 265165 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 616-130 chr5 28021674 28022077 + 2 NA Intergenic Intergenic 265790 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 205-145 chr2 126301889 126302029 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -183974 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 380-71 chr11 87208427 87208787 + 2 NA intron (NR_033149, intron 4 of 13) L1P4a|LINE|L1 170673 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 353-199 chr17 74673645 74673910 + 2 NA intron (NM_175738, intron 1 of 8) intron (NM_175738, intron 1 of 8) 2646 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 431-153 chr2 191795778 191796066 + 2 NA intron (NR_157850, intron 2 of 4) intron (NR_157850, intron 2 of 4) 3082 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 344-487 chr8 62327037 62327364 + 2 NA intron (NM_001304533, intron 1 of 6) L1M4|LINE|L1 78346 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 245-200 chr2 123521526 123521698 + 2 NA Intergenic Intergenic -448131 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 229-222 chr20 32171390 32171577 + 2 NA Intergenic FLAM_A|SINE|Alu 18877 NR_002781 128854 Hs.647447 NR_002781 ENSG00000235217 TSPY26P TSPYL3|bA392M18.1 testis specific protein Y-linked 26, pseudogene pseudo 441-198 chr5 34587783 34588172 + 2 NA Intergenic Intergenic -68351 NM_001145522 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 396-50 chr10 57893469 57893751 + 2 NA Intergenic MER4B|LTR|ERV1 374284 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 293 chr1 5206380 5206633 + 2 NA Intergenic Intergenic 551897 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 126-50 chr5 32778589 32778697 + 2 NA intron (NM_001364460, intron 3 of 6) intron (NM_001364460, intron 3 of 6) 67322 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 487-294 chr8 102665019 102665487 + 2 NA intron (NR_160672, intron 1 of 4) AluJb|SINE|Alu 9005 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 273-335 chr4 108496162 108496312 + 2 NA Intergenic L1MA8|LINE|L1 -60996 NR_134679 101929621 Hs.679455 NR_134679 LOC101929621 - uncharacterized LOC101929621 ncRNA 329-199 chr16 9808274 9808463 + 2 NA intron (NM_001134408, intron 10 of 13) intron (NM_001134408, intron 10 of 13) -352863 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 281-362 chr5 69059385 69059534 + 2 NA Intergenic L1MA3|LINE|L1 -29532 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 312-46 chr10 58984870 58985060 + 2 NA Intergenic L1ME4b|LINE|L1 -14553 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 423-192 chr4 44789609 44789953 + 2 NA Intergenic L1MA1|LINE|L1 -63147 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 543-216 chr6 62006489 62006885 + 2 NA intron (NR_146874, intron 3 of 13) L1MEd|LINE|L1 279538 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 441-138 chr2 220264830 220265162 + 2 NA Intergenic Intergenic -358431 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 374-73 chr12 75431743 75432107 + 2 NA non-coding (NR_072995, exon 7 of 7) non-coding (NR_072995, exon 7 of 7) 40836 NM_001270396 144321 Hs.406728 NM_152436 ENSG00000180481 GLIPR1L2 - GLIPR1 like 2 protein-coding 331-369 chr3 181501903 181502073 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) -59502 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 231-110 chr15 93351714 93351878 + 2 NA Intergenic L3|LINE|CR1 145730 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 246-348 chr6 45549667 45549873 + 2 NA 3' UTR (NM_001024630, exon 9 of 9) 3' UTR (NM_001024630, exon 9 of 9) 127495 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 260-130 chr14 65998076 65998328 + 2 NA Intergenic Intergenic -488169 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 222-357 chr8 20848567 20848737 + 2 NA Intergenic Intergenic -104981 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 680-14 chr10 20323317 20323922 + 2 NA Intergenic MER57A-int|LTR|ERV1 -228351 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 248-383 chr7 84142395 84142567 + 2 NA intron (NM_006080, intron 1 of 16) MIRb|SINE|MIR 52308 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 325-324 chr21 38185595 38185779 + 2 NA Intergenic L1MB7|LINE|L1 -20469 NR_027695 259234 Hs.147695 NM_148676 ENSG00000233316 DSCR10 - Down syndrome critical region 10 ncRNA 422-243 chr5 107855330 107855636 + 2 NA Intergenic L1MEd|LINE|L1 -184546 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 151-13 chr10 67273758 67273836 + 2 NA intron (NM_001127384, intron 5 of 17) L1ME2z|LINE|L1 129613 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 295-289 chr3 31478009 31478236 + 2 NA Intergenic Intergenic -54803 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 445-111 chr2 13800785 13801063 + 2 NA Intergenic Intergenic 600034 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 416-312 chr7 62826206 62826492 + 2 NA Intergenic ALR/Alpha|Satellite|centr 477707 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 479-11 chr1 170841670 170842026 + 2 NA Intergenic AluJr|SINE|Alu -93623 NM_001163629 80133 Hs.591489 NM_025063 ENSG00000117501 MROH9 ARMC11|C1orf129 maestro heat like repeat family member 9 protein-coding 241-221 chr20 48096581 48096771 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -106559 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 265-300 chr5 27007390 27007567 + 2 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 31108 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 600-32 chr14 51460887 51461312 + 2 NA intron (NR_051990, intron 2 of 2) LTR84b|LTR|ERVL -28029 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 412-155 chr2 58403259 58403658 + 2 NA Intergenic L1MC3|LINE|L1 -117295 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 276-129 chr13 80646369 80646559 + 2 NA Intergenic L1MA4A|LINE|L1 -305338 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 425-184 chr3 65848611 65848871 + 2 NA intron (NM_001365904, intron 1 of 24) MIR|SINE|MIR -45075 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 244-331 chr6 154102207 154102434 + 2 NA intron (NR_104348, intron 4 of 4) MIR|SINE|MIR 12558 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 196-46 chr11 78691478 78691666 + 2 NA intron (NM_001098816, intron 28 of 33) intron (NM_001098816, intron 28 of 33) -116708 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 382-19 chr1 184169384 184169674 + 2 NA Intergenic L1MA3|LINE|L1 117799 NM_001300766 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 227-263 chr4 111296432 111296597 + 2 NA Intergenic Intergenic -435867 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 410-288 chr7 112750332 112750733 + 2 NA Intergenic L1PA15|LINE|L1 39861 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 255-84 chr12 118938891 118939070 + 2 NA Intergenic L2c|LINE|L2 -42561 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 211-283 chr7 111037141 111037319 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -53776 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 516-82 chr15 58703489 58703752 + 2 NA intron (NM_001320570, intron 2 of 14) intron (NM_001320570, intron 2 of 14) -10013 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 344-425 chr6 88476196 88476368 + 2 NA Intergenic Intergenic 63087 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 271-29 chr1 218513219 218513454 + 2 NA intron (NR_146760, intron 1 of 2) intron (NR_146760, intron 1 of 2) 3241 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 250-431 chr8 91751716 91751944 + 2 NA Intergenic Intergenic 265850 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 265-215 chr20 52236473 52236693 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -44598 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 306-87 chr11 95947743 95947901 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -23615 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 488-207 chr5 38286846 38287213 + 2 NA intron (NR_046219, intron 1 of 3) intron (NR_046219, intron 1 of 3) 3957 NR_046219 100852408 Hs.570954 NR_046219 ENSG00000248730 EGFLAM-AS4 - EGFLAM antisense RNA 4 ncRNA 257-6 chr1 67900546 67900799 + 2 NA intron (NR_040077, intron 1 of 9) L1PB1|LINE|L1 -67205 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 438-228 chr5 126078322 126078626 + 2 NA Intergenic L1MEg1|LINE|L1 -101103 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 255-453 chr9 24544718 24544884 + 2 NA intron (NM_001365008, intron 3 of 6) intron (NM_001365008, intron 3 of 6) 875 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 524-275 chr9 25340324 25340654 + 2 NA Intergenic L1MA4A|LINE|L1 338369 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 275-250 chr3 105931153 105931413 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -61882 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 320-288 chr2 181330292 181330498 + 2 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) -24743 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 431-17 chr1 158401889 158402245 + 2 NA Intergenic Intergenic -2601 NM_001004475 128360 Hs.553588 NM_001004475 ENSG00000186306 OR10T2 OR1-3 olfactory receptor family 10 subfamily T member 2 protein-coding 708-60 chr5 58749949 58750615 + 2 NA intron (NM_138453, intron 3 of 4) intron (NM_138453, intron 3 of 4) 167207 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 168-15 chr10 108922432 108922574 + 2 NA Intergenic Intergenic -853210 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 433-43 chr11 36827653 36827961 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -229528 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 424-141 chr2 129138194 129138577 + 2 NA Intergenic L1MCa|LINE|L1 135506 NR_122040 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 267-94 chr12 126817500 126817714 + 2 NA Intergenic Intergenic -45345 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 283-138 chr14 76697645 76697835 + 2 NA Intergenic Intergenic -63728 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 142-87 chrX 43984508 43984587 + 2 NA Intergenic Intergenic -11157 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 305-477 chr6 81246749 81246946 + 2 NA Intergenic L1PB4|LINE|L1 505834 NM_017633 55603 Hs.10784 NM_017633 ENSG00000112773 TENT5A C6orf37|FAM46A|OI18|XTP11 terminal nucleotidyltransferase 5A protein-coding 345-139 chr13 70180643 70180900 + 2 NA Intergenic L2|LINE|L2 -72278 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 196-22 chr1 239602788 239602944 + 2 NA intron (NM_001347716, intron 3 of 7) L1MB2|LINE|L1 -26207 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 165-140 chr9 91399818 91399968 + 2 NA Intergenic Intergenic 23939 NM_005384 4783 Hs.79334 NM_005384 ENSG00000165030 NFIL3 E4BP4|IL3BP1|NF-IL3A|NFIL3A nuclear factor, interleukin 3 regulated protein-coding 288-398 chr7 33719832 33719993 + 2 NA Intergenic Intergenic -185003 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 277-276 chr3 154475572 154475798 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -45495 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 316-451 chr5 107088340 107088649 + 2 NA Intergenic Intergenic -77480 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 171-29 chr14 23550645 23550805 + 2 NA intron (NM_033400, intron 1 of 9) intron (NM_033400, intron 1 of 9) 1040 NM_033400 85446 Hs.508937 NM_033400 ENSG00000136367 ZFHX2 MARSIS|ZFH-5|ZFH5|ZNF409 zinc finger homeobox 2 protein-coding 388-358 chr8 139614668 139614925 + 2 NA intron (NR_104210, intron 2 of 3) intron (NR_104210, intron 2 of 3) 88327 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 217-37 chr10 36503353 36503510 + 2 NA Intergenic L2c|LINE|L2 -622426 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 276-313 chr3 177743833 177744036 + 2 NA intron (NR_047568, intron 3 of 3) L2a|LINE|L2 -72931 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 154-26 chr12 100839689 100839812 + 2 NA intron (NM_001286615, intron 1 of 27) intron (NM_001286615, intron 1 of 27) 44974 NM_178826 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 322-163 chr14 86274386 86274637 + 2 NA Intergenic Intergenic 339833 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 369-146 chr16 26292867 26293102 + 2 NA Intergenic Intergenic 267747 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 593-34 chr12 49939377 49939778 + 2 NA Intergenic Charlie19a|DNA|hAT-Charlie -11164 NM_000486 359 Hs.130730 NM_000486 ENSG00000167580 AQP2 AQP-CD|WCH-CD aquaporin 2 protein-coding 431-288 chr8 35420797 35421167 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -123410 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 256-350 chr6 13276975 13277198 + 2 NA intron (NR_134872, intron 7 of 7) intron (NR_134872, intron 7 of 7) 6356 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 310-410 chr5 88352140 88352352 + 2 NA intron (NR_105019, intron 6 of 7) intron (NR_105019, intron 6 of 7) -39949 NR_105020 100505894 Hs.559426 NR_039993 ENSG00000247828 TMEM161B-AS1 linc-POLR3G-8 TMEM161B antisense RNA 1 ncRNA 157-76 chr21 23258134 23258252 + 2 NA Intergenic (ATT)n|Simple_repeat|Simple_repeat 126642 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 383-265 chr3 182072195 182072486 + 2 NA Intergenic L1MA4|LINE|L1 119976 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 306-262 chr2 205109976 205110224 + 2 NA intron (NM_205863, intron 5 of 21) intron (NM_205863, intron 5 of 21) 564625 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 380-76 chr11 107224427 107224766 + 2 NA Intergenic Intergenic -206120 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 328-385 chr4 23579319 23579592 + 2 NA Intergenic Intergenic 301837 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 300-2 chr1 14767897 14768115 + 2 NA intron (NM_201628, intron 1 of 14) intron (NM_201628, intron 1 of 14) -156123 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 348-475 chr6 162487089 162487394 + 2 NA intron (NM_004562, intron 1 of 11) intron (NM_004562, intron 1 of 11) -239891 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 573-172 chr6 134597917 134598213 + 2 NA Intergenic L1PB1|LINE|L1 -58060 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 483-63 chr14 59407239 59407602 + 2 NA Intergenic Intergenic 57960 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 134-30 chr14 49932498 49932589 + 2 NA Intergenic Intergenic -33856 NR_106724 102464828 NR_106724 ENSG00000278038 MIR6076 hsa-mir-6076 microRNA 6076 ncRNA 811-11 chr12 34562910 34563624 + 2 NA Intergenic ALR/Alpha|Satellite|centr 540771 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 342-38 chr1 189936458 189936704 + 2 NA Intergenic AluSp|SINE|Alu 539429 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 301-177 chr18 54800635 54800796 + 2 NA Intergenic Intergenic -27762 NM_004163 5874 Hs.25318 NM_004163 ENSG00000041353 RAB27B C25KG RAB27B, member RAS oncogene family protein-coding 255-339 chr5 120734629 120734801 + 2 NA Intergenic Intergenic 203251 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 376-47 chr10 52078775 52079075 + 2 NA intron (NM_001098512, intron 7 of 17) intron (NM_001098512, intron 7 of 17) 235203 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 474-283 chr8 61522773 61523118 + 2 NA intron (NM_004318, intron 22 of 24) MLT1B|LTR|ERVL-MaLR 166866 NM_001164752 444 Hs.332422 NM_004318 ENSG00000198363 ASPH AAH|BAH|CASQ2BP1|FDLAB|HAAH|JCTN|junctin aspartate beta-hydroxylase protein-coding 123-21 chr16 47124818 47124906 + 2 NA intron (NM_001201477, intron 4 of 8) MIRc|SINE|MIR 19083 NM_001201477 81831 Hs.645802 NM_018092 ENSG00000171208 NETO2 BTCL2|NEOT2 neuropilin and tolloid like 2 protein-coding 434-314 chr9 37285303 37285568 + 2 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) -137261 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 295-430 chr7 19279003 19279233 + 2 NA Intergenic L1MB1|LINE|L1 -133697 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 417-57 chr12 33385457 33385698 + 2 NA intron (NM_198992, intron 3 of 6) L2a|LINE|L2 54242 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 324-322 chr21 20003033 20003283 + 2 NA Intergenic Intergenic -103403 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 369-359 chr6 118997857 118998145 + 2 NA intron (NM_024581, intron 9 of 17) intron (NM_024581, intron 9 of 17) -62839 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 411-189 chr3 129736682 129736984 + 2 NA intron (NM_001349271, intron 2 of 4) intron (NM_001349271, intron 2 of 4) -12720 NM_001349274 23023 Hs.477547 NM_015008 ENSG00000172765 TMCC1 - transmembrane and coiled-coil domain family 1 protein-coding 327-276 chr2 158075782 158076035 + 2 NA intron (NM_001135098, intron 2 of 8) L1MA2|LINE|L1 -25962 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 212-125 chr18 5639401 5639577 + 2 NA Intergenic Intergenic -10498 NM_001281535 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 355-224 chr19 57520468 57520816 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -6683 NM_153263 256051 Hs.744289 NM_153263 ENSG00000121406 ZNF549 - zinc finger protein 549 protein-coding 123-29 chr2 220517788 220517863 + 2 NA Intergenic Intergenic -611260 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 564-102 chr2 82076142 82076540 + 2 NA Intergenic Intergenic -609395 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 413-167 chr20 43419307 43419643 + 2 NA Intergenic AluJb|SINE|Alu -38421 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 291-467 chr8 124825120 124825393 + 2 NA Intergenic Intergenic -3198 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 538-74 chr14 87545647 87546057 + 2 NA Intergenic MIR|SINE|MIR 109442 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 215-167 chr2 231551251 231551410 + 2 NA Intergenic Intergenic -20885 NM_006056 10316 Hs.471619 NM_006056 ENSG00000171596 NMUR1 (FM-3)|FM-3|FM3|GPC-R|GPR66|NMU1R neuromedin U receptor 1 protein-coding 359-5 chr1 37059994 37060297 + 2 NA Intergenic Intergenic -25630 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 196-62 chr12 116585366 116585514 + 2 NA Intergenic Intergenic 26059 NM_001085481 643246 Hs.356061 NM_001085481 ENSG00000258102 MAP1LC3B2 ATG8G microtubule associated protein 1 light chain 3 beta 2 protein-coding 336-147 chr13 33812023 33812272 + 2 NA Intergenic Intergenic -5922 NM_181558 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 468-283 chr6 119102044 119102406 + 2 NA intron (NM_001288576, intron 1 of 15) intron (NM_001288576, intron 1 of 15) -23561 NM_024581 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 247-267 chr3 102035620 102035796 + 2 NA Intergenic Intergenic 94849 NR_026934 152225 Hs.376768 NR_026934 ENSG00000214407 LINC02085 - long intergenic non-protein coding RNA 2085 ncRNA 218-114 chr16 22861961 22862131 + 2 NA intron (NM_006043, intron 1 of 1) L2a|LINE|L2 47884 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 248-96 chr13 40427343 40427567 + 2 NA intron (NR_024506, intron 5 of 5) Charlie18a|DNA|hAT-Charlie 53551 NR_024505 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 349-452 chr6 115837998 115838282 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -194305 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 276-470 chr9 10514112 10514356 + 2 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 98768 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 544-120 chr2 117285280 117285666 + 2 NA Intergenic L1MA4|LINE|L1 -529218 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 283-161 chr16 49320223 49320480 + 2 NA Intergenic L1ME3G|LINE|L1 -38513 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 556-148 chr3 131179176 131179675 + 2 NA intron (NM_001353043, intron 14 of 17) Kanga2_a|DNA|TcMar-Tc2 151697 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 226-260 chr4 115739433 115739653 + 2 NA Intergenic Intergenic -560182 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 412-343 chr9 27176229 27176510 + 2 NA intron (NM_001290077, intron 6 of 21) intron (NM_001290077, intron 6 of 21) 67228 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 380-357 chr7 18246706 18247025 + 2 NA intron (NM_001321872, intron 2 of 11) L2a|LINE|L2 -43227 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 229-86 chr12 17339794 17340010 + 2 NA Intergenic L1MB2|LINE|L1 249176 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 339-599 chr8 139690895 139691111 + 2 NA intron (NR_104210, intron 1 of 3) intron (NR_104210, intron 1 of 3) 12120 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 209-195 chr3 29338088 29338243 + 2 NA intron (NM_001003792, intron 1 of 13) intron (NM_001003792, intron 1 of 13) 56853 NM_001330696 27303 Hs.221436 NM_014483 ENSG00000144642 RBMS3 - RNA binding motif single stranded interacting protein 3 protein-coding 342-401 chr5 60644676 60644911 + 2 NA exon (NM_018369, exon 5 of 11) exon (NM_018369, exon 5 of 11) 55373 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 409-272 chr7 4674932 4675163 + 2 NA Intergenic AluJb|SINE|Alu -7248 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 452-56 chr12 40078095 40078395 + 2 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 27836 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 461-20 chr1 207666620 207667007 + 2 NA intron (NM_175710, intron 1 of 11) L1PA13|LINE|L1 21680 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 227-121 chr15 94062648 94062831 + 2 NA intron (NR_120320, intron 2 of 8) intron (NR_120320, intron 2 of 8) 45199 NR_120320 101927112 Hs.134687 NR_120320 ENSG00000259724 LINC01581 - long intergenic non-protein coding RNA 1581 ncRNA 238-49 chr10 98220050 98220251 + 2 NA intron (NM_001256619, intron 6 of 10) L1M2|LINE|L1 48044 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 343-326 chr3 8140847 8141183 + 2 NA Intergenic Intergenic -124708 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 326-59 chr10 24263056 24263358 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) -12478 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 259-377 chr8 20505606 20505810 + 2 NA Intergenic L1ME4b|LINE|L1 109218 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 216-172 chr2 101214077 101214203 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -38746 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 323-146 chr14 65138390 65138652 + 2 NA Intergenic Intergenic -35826 NR_073138 4149 Hs.285354 NM_002382 ENSG00000125952 MAX bHLHd4 MYC associated factor X protein-coding 263-383 chr7 15367626 15367802 + 2 NA intron (NM_001004320, intron 10 of 12) intron (NM_001004320, intron 10 of 12) 194301 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 276-253 chr2 236802123 236802309 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 232391 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 283-121 chr13 58573586 58573797 + 2 NA Intergenic L1MD2|LINE|L1 -340574 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 354-464 chr8 86315293 86315537 + 2 NA Intergenic L1PREC2|LINE|L1 -27132 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 440-40 chr12 14134957 14135274 + 2 NA Intergenic Intergenic -154759 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 174-90 chr3 96662176 96662330 + 2 NA Intergenic Intergenic -152341 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 637-86 chr4 36882105 36882572 + 2 NA Intergenic Intergenic -119441 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 379-252 chr4 171756628 171757003 + 2 NA Intergenic Intergenic -56589 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 517-61 chr12 94038737 94039090 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -95307 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 279-48 chr10 66023587 66023790 + 2 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 452263 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 283-132 chr14 64996652 64996850 + 2 NA intron (NM_002028, intron 1 of 11) intron (NM_002028, intron 1 of 11) 9856 NM_002028 2342 Hs.325531 NM_002028 ENSG00000257365 FNTB FPTB farnesyltransferase, CAAX box, beta protein-coding 225-46 chr10 118607729 118607870 + 2 NA Intergenic Intergenic -12151 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 524-17 chr1 190522561 190522896 + 2 NA Intergenic Intergenic 44177 NR_110717 101929120 Hs.602301 NR_110716 LINC01351 - long intergenic non-protein coding RNA 1351 ncRNA 239-124 chr15 97636190 97636358 + 2 NA Intergenic Intergenic -75576 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 373-306 chr5 10792441 10792710 + 2 NA Intergenic MER50B|LTR|ERV1 -31341 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 469-183 chr3 98245070 98245440 + 2 NA Intergenic HERVH-int|LTR|ERV1 -18989 NM_001005479 79295 Hs.554712 NM_001005479 ENSG00000230301 OR5H6 OR3-11 olfactory receptor family 5 subfamily H member 6 (gene/pseudogene) protein-coding 320-543 chr8 68732287 68732580 + 2 NA intron (NM_001349479, intron 9 of 11) L1M5|LINE|L1 371757 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 382-277 chr3 144729198 144729440 + 2 NA Intergenic MIRb|SINE|MIR 756238 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 238-89 chr13 37267464 37267650 + 2 NA Intergenic Intergenic -161893 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 239-183 chr2 123254687 123254918 + 2 NA Intergenic L1MCb|LINE|L1 -181321 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 455-252 chr6 152603865 152604169 + 2 NA intron (NM_182961, intron 3 of 145) (TA)n|Simple_repeat|Simple_repeat 32834 NM_033071 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 266-147 chr17 34449956 34450133 + 2 NA Intergenic Intergenic -86811 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 614-118 chr7 26784267 26784802 + 2 NA intron (NM_003930, intron 4 of 12) intron (NM_003930, intron 4 of 12) 73189 NM_001303468 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 403-211 chr4 14300164 14300433 + 2 NA Intergenic Intergenic 188330 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 175-52 chr14 101303074 101303226 + 2 NA Intergenic L1MC2|LINE|L1 104772 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 528-252 chr8 106259338 106259793 + 2 NA Intergenic L1PB1|LINE|L1 -10613 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 387-291 chr5 110856403 110856692 + 2 NA Intergenic Intergenic 117540 NR_138151 91137 Hs.75639 NM_138773 ENSG00000164209 SLC25A46 HMSN6B solute carrier family 25 member 46 protein-coding 257-156 chr18 47368833 47369057 + 2 NA intron (NR_147192, intron 1 of 2) Tigger2|DNA|TcMar-Tigger -11551 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 204-183 chr22 26977541 26977714 + 2 NA Intergenic Intergenic 74335 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 414-73 chr12 111124757 111125159 + 2 NA intron (NM_001370598, intron 1 of 21) MER39B|LTR|ERV1 24954 NM_001370598 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 486-172 chr20 42656413 42656754 + 2 NA intron (NM_133170, intron 7 of 31) L1ME4a|LINE|L1 -28900 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 589-105 chr4 52534455 52534941 + 2 NA Intergenic L1PA11|LINE|L1 121841 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 279-330 chr5 78549913 78550102 + 2 NA intron (NM_005779, intron 3 of 4) intron (NM_005779, intron 3 of 4) 98765 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 360-64 chr11 42993507 42993696 + 2 NA Intergenic AluJb|SINE|Alu 275768 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 476-166 chr21 22312977 22313399 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 214571 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 382-307 chr4 117950170 117950392 + 2 NA Intergenic LTR78|LTR|ERV1 -83041 NR_146513 9348 Hs.480596 NM_004784 ENSG00000164100 NDST3 HSST3 N-deacetylase and N-sulfotransferase 3 protein-coding 175-21 chr1 238981323 238981465 + 2 NA Intergenic Intergenic -405174 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 271-124 chr14 42064329 42064481 + 2 NA Intergenic L1PA15|LINE|L1 457549 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 276-205 chr19 11982013 11982200 + 2 NA Intergenic Intergenic -5511 NR_134928 101928464 Hs.631643 NR_134927 ENSG00000219665 ZNF433-AS1 - ZNF433 and ZNF878 antisense RNA 1 ncRNA 396-124 chr17 19973704 19973959 + 2 NA intron (NM_007202, intron 1 of 14) L2a|LINE|L2 3997 NM_007202 11216 Hs.642676 NM_007202 ENSG00000108599 AKAP10 AKAP-10|D-AKAP-2|D-AKAP2|PRKA10 A-kinase anchoring protein 10 protein-coding 296-347 chr4 93490865 93491112 + 2 NA intron (NM_001286838, intron 11 of 14) intron (NM_001286838, intron 11 of 14) -337765 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 309-153 chr14 62416840 62417112 + 2 NA Intergenic Intergenic -277003 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 464-253 chr8 67172548 67172949 + 2 NA intron (NM_001363133, intron 22 of 27) intron (NM_001363133, intron 22 of 27) 88900 NM_001291339 79848 Hs.370147 NM_024790 ENSG00000104218 CSPP1 CSPP|JBTS21 centrosome and spindle pole associated protein 1 protein-coding 425-267 chr6 145484737 145485125 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat 201946 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 663-63 chr20 45398034 45398519 + 2 NA intron (NR_003189, intron 3 of 5) LTR40c|LTR|ERVL -7717 NM_001197139 55861 Hs.730643 NM_018478 ENSG00000244274 DBNDD2 C20orf35|CK1BP|HSMNP1 dysbindin domain containing 2 protein-coding 642-80 chr4 45903560 45904007 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 220271 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 366-191 chr2 31115135 31115372 + 2 NA intron (NM_001329096, intron 2 of 16) AluJo|SINE|Alu 14387 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 611-78 chr2 99519695 99520244 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -29952 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 131-45 chr20 38876475 38876578 + 2 NA intron (NM_015568, intron 2 of 10) MER58B|DNA|hAT-Charlie -49891 NM_030919 81610 Hs.726442 NM_030919 ENSG00000101447 FAM83D C20orf129|CHICA|dJ616B8.3 family with sequence similarity 83 member D protein-coding 487-42 chr10 78887066 78887353 + 2 NA Intergenic HAL1b|LINE|L1 180239 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 569-84 chr19 56460909 56461296 + 2 NA intron (NM_022103, intron 2 of 4) MIR|SINE|MIR 16243 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 352-210 chr19 51843469 51843766 + 2 NA intron (NR_163433, intron 6 of 11) intron (NR_163433, intron 6 of 11) 44319 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 353-493 chr7 89602707 89602995 + 2 NA Intergenic HAL1b|LINE|L1 -516549 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 226-311 chr6 137741272 137741455 + 2 NA Intergenic Intergenic -2326 NR_121619 100507406 Hs.556703 NR_121618 ENSG00000234956 LINC02539 - long intergenic non-protein coding RNA 2539 ncRNA 355-56 chr10 70796189 70796506 + 2 NA Intergenic L1P3|LINE|L1 -10928 NM_001318241 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 568-76 chr16 76788527 76788911 + 2 NA Intergenic L1MC3|LINE|L1 -80217 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 359-294 chr21 20639739 20640023 + 2 NA Intergenic L1MB3|LINE|L1 163227 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 363-355 chr5 39267659 39268016 + 2 NA intron (NM_001243093, intron 1 of 18) L1ME4a|LINE|L1 2812 NM_001243093 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 474-123 chr19 37215516 37215912 + 2 NA Intergenic L1ME1|LINE|L1 -2500 NM_001345947 163087 Hs.590975 NM_152604 ENSG00000188283 ZNF383 HSD17 zinc finger protein 383 protein-coding 304-176 chr16 31599661 31599919 + 2 NA Intergenic Intergenic -30266 NR_027011 440359 Hs.650902 NR_027011 YBX3P1 CSDAP1 Y-box binding protein 3 pseudogene 1 pseudo 275-188 chr2 51154048 51154281 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 121563 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 304-528 chr8 111062419 111062718 + 2 NA Intergenic AluY|SINE|Alu -35135 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 940-3 chr10 22895417 22896120 + 2 NA Intergenic L1MEf|LINE|L1 -32256 NM_001282747 219681 Hs.659807 NM_173081 ENSG00000165309 ARMC3 CT81|KU-CT-1 armadillo repeat containing 3 protein-coding 283-175 chr17 13995778 13996003 + 2 NA Intergenic Intergenic -28608 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 226-216 chr3 22982381 22982598 + 2 NA Intergenic Intergenic 220089 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 342-105 chr12 14899509 14899794 + 2 NA Intergenic L1MEi|LINE|L1 -13797 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 216-273 chr5 36514155 36514330 + 2 NA Intergenic Intergenic -92113 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 393-108 chr14_GL000225v1_random 15154 15408 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 341-89 chr11 80786851 80787094 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -24169 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 560-168 chr7 31222989 31223408 + 2 NA Intergenic L1MA4A|LINE|L1 117528 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 297-316 chr4 23091166 23091333 + 2 NA Intergenic Intergenic 377160 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 525-155 chr3 44244403 44244784 + 2 NA exon (NM_001145030, exon 2 of 20) exon (NM_001145030, exon 2 of 20) 2707 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 228-72 chr12 64339866 64340040 + 2 NA intron (NM_001099676, intron 2 of 10) (TA)n|Simple_repeat|Simple_repeat 50805 NM_001099676 115749 Hs.535190 NM_001099676 ENSG00000185306 C12orf56 - chromosome 12 open reading frame 56 protein-coding 518-149 chr2 178670957 178671348 + 2 NA exon (NM_001267550, exon 156 of 363) exon (NM_001267550, exon 156 of 363) -105774 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 257-421 chr8 122478771 122478990 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 89764 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 321-298 chr2 129472562 129472857 + 2 NA Intergenic L1MB4|LINE|L1 -198818 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 709-67 chr4 54745003 54745486 + 2 NA Intergenic Intergenic 87316 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 481-19 chr10 1219164 1219538 + 2 NA intron (NM_018702, intron 6 of 9) intron (NM_018702, intron 6 of 9) 59583 NR_015376 399706 Hs.721191 NM_001010910 ENSG00000229205 LINC00200 C10orf139|NCRNA00200 long intergenic non-protein coding RNA 200 ncRNA 368-229 chr2 52102336 52102554 + 2 NA intron (NR_135237, intron 7 of 10) L1MC1|LINE|L1 -268203 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 309-85 chr11 70929340 70929517 + 2 NA intron (NM_012309, intron 9 of 24) MLT1D|LTR|ERVL-MaLR -57060 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 152-4 chr1 105491514 105491654 + 2 NA Intergenic Intergenic 127351 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 221-86 chr14 62746534 62746714 + 2 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 298834 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 216-323 chr7 83623165 83623318 + 2 NA intron (NM_012431, intron 1 of 16) L1MC5|LINE|L1 18190 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 251-119 chr16 22997910 22998145 + 2 NA Intergenic Intergenic 151243 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 207-315 chr9 101869780 101869955 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -131287 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 378-292 chr3 148800037 148800285 + 2 NA Intergenic L1MB8|LINE|L1 -27650 NM_001871 1360 Hs.477891 NM_001871 ENSG00000153002 CPB1 CPB|PASP|PCPB carboxypeptidase B1 protein-coding 310-117 chr13 73851134 73851402 + 2 NA intron (NM_007249, intron 3 of 7) intron (NM_007249, intron 3 of 7) 282661 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 521-86 chr14 86302963 86303337 + 2 NA Intergenic Intergenic 368472 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 448-77 chr13 92416600 92416981 + 2 NA intron (NM_004466, intron 7 of 7) L1MB7|LINE|L1 -64583 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 266-81 chr12 14349964 14350163 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -15569 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 249-333 chr5 55441754 55441959 + 2 NA exon (NM_003711, exon 4 of 6) exon (NM_003711, exon 4 of 6) 67070 NR_049869 100847019 NR_049869 ENSG00000265135 MIR5687 - microRNA 5687 ncRNA 342-27 chr1 115021801 115022039 + 2 NA Intergenic L1MEc|LINE|L1 -7904 NM_000549 7252 Hs.406687 NM_000549 ENSG00000134200 TSHB TSH-B|TSH-BETA thyroid stimulating hormone subunit beta protein-coding 215-192 chr3 77932815 77932980 + 2 NA Intergenic Intergenic 116066 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 320-376 chr4 27912386 27912574 + 2 NA Intergenic Intergenic 695001 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 235-386 chr9 31312982 31313206 + 2 NA Intergenic Intergenic 68396 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 453-190 chr4 141478837 141479158 + 2 NA Intergenic L1MA4|LINE|L1 -146380 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 224-260 chr5 125521202 125521384 + 2 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 28032 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 542-23 chr10 66026229 66026632 + 2 NA intron (NM_001127384, intron 15 of 17) intron (NM_001127384, intron 15 of 17) 455005 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 283-124 chr13 90369429 90369705 + 2 NA Intergenic AluSg|SINE|Alu -123721 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 557-60 chr15 99289292 99289811 + 2 NA intron (NM_001321677, intron 5 of 8) intron (NM_001321677, intron 5 of 8) 32026 NR_073383 7190 Hs.656611 NR_073383 ENSG00000259706 HSP90B2P GRP94P1|GRP94b|HSP|HSPCP2|TRA1P1|TRAP1 heat shock protein 90 beta family member 2, pseudogene pseudo 278-68 chr12 23982832 23983038 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -31903 NM_001261415 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 280-61 chr10 113542189 113542338 + 2 NA Intergenic LTR82B|LTR|ERVL -8568 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 464-18 chr10 39397247 39397622 + 2 NA Intergenic ALR/Alpha|Satellite|centr 700838 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 351-178 chr17 70862748 70862945 + 2 NA Intergenic Intergenic 339333 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 586-173 chrX 94147379 94147736 + 2 NA Intergenic L1MCa|LINE|L1 473351 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 408-204 chr3 6962421 6962818 + 2 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -68602 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 332-587 chrX 63951661 63951922 + 2 NA Intergenic L1MB3|LINE|L1 -165704 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 341-55 chr10 20391691 20391907 + 2 NA Intergenic L1ME5|LINE|L1 -160171 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 242-394 chr8 82692931 82693131 + 2 NA Intergenic Intergenic -219073 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 253-191 chr2 114254797 114254976 + 2 NA Intergenic L1MC3|LINE|L1 -187755 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 220-215 chr3 14250848 14251013 + 2 NA Intergenic MER107|DNA|hAT-Charlie 72113 NM_014463 27258 Hs.111632 NM_014463 ENSG00000170860 LSM3 SMX4|USS2|YLR438C LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 746-31 chr19 9373964 9374656 + 2 NA intron (NM_003451, intron 3 of 8) L1MA9|LINE|L1 -2006 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 382-70 chr11 118020826 118021103 + 2 NA intron (NM_001354434, intron 3 of 5) L1ME3C|LINE|L1 34570 NR_026691 3587 Hs.504035 NM_001558 ENSG00000110324 IL10RA CD210|CD210a|CDW210A|HIL-10R|IL-10R1|IL10R interleukin 10 receptor subunit alpha protein-coding 338-226 chr18 22496170 22496359 + 2 NA Intergenic L1MD1|LINE|L1 -78349 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 224-141 chr2 59408146 59408315 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 190522 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 270-413 chr8 129276368 129276591 + 2 NA Intergenic Intergenic -35239 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 322-143 chr13 55317914 55318162 + 2 NA Intergenic L1ME3B|LINE|L1 143584 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 343-182 chr16 55110983 55111245 + 2 NA Intergenic L1MA9|LINE|L1 179915 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 352-165 chr15 91437640 91437950 + 2 NA Intergenic L1MEf|LINE|L1 -25544 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 315-467 chr8 43776623 43776896 + 2 NA Intergenic ALR/Alpha|Satellite|centr 484317 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 403-210 chr4 11702441 11702745 + 2 NA Intergenic Intergenic 66875 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 594-72 chr2 149198249 149198754 + 2 NA intron (NM_001317002, intron 4 of 7) intron (NM_001317002, intron 4 of 7) 80327 NM_001317002 130576 Hs.357567 NM_177964 ENSG00000150556 LYPD6B CT116|LYPD7 LY6/PLAUR domain containing 6B protein-coding 318-103 chr11 55773802 55774095 + 2 NA exon (NM_001001967, exon 1 of 1) exon (NM_001001967, exon 1 of 1) 510 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 361-11 chr1 90605814 90606027 + 2 NA Intergenic L1ME3D|LINE|L1 -51830 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 283-188 chr17 70301272 70301515 + 2 NA Intergenic L1MCc|LINE|L1 131858 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 345-549 chr9 28037348 28037591 + 2 NA intron (NM_152570, intron 5 of 6) L2c|LINE|L2 -463603 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 373-328 chr5 96250204 96250409 + 2 NA intron (NR_130776, intron 1 of 4) MLT1J|LTR|ERVL-MaLR 171168 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 302-482 chr9 28130007 28130221 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -556248 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 318-203 chr16 82316975 82317214 + 2 NA Intergenic Intergenic -146870 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 200-143 chr2 192086785 192086944 + 2 NA intron (NM_001305134, intron 4 of 9) intron (NM_001305134, intron 4 of 9) 108069 NM_001305145 23671 Hs.144513 NM_016192 ENSG00000144339 TMEFF2 CT120.2|HPP1|TENB2|TPEF|TR|TR-2 transmembrane protein with EGF like and two follistatin like domains 2 protein-coding 304-49 chr10 39142311 39142519 + 2 NA Intergenic ALR/Alpha|Satellite|centr 445819 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 298-516 chrX 77180444 77180640 + 2 NA Intergenic Intergenic -166010 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 212-195 chr21 37096367 37096560 + 2 NA intron (NM_003316, intron 9 of 45) MIRc|SINE|MIR 13516 NM_003316 7267 Hs.368214 NM_003316 ENSG00000182670 TTC3 DCRR1|RNF105|TPRDIII tetratricopeptide repeat domain 3 protein-coding 181-79 chr2 212376706 212376869 + 2 NA intron (NM_001042599, intron 1 of 26) HSMAR2|DNA|TcMar-Mariner 49573 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 729-24 chr14 46136734 46137415 + 2 NA intron (NR_102702, intron 1 of 3) L1MC4|LINE|L1 72915 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 537-35 chr11 3979640 3980157 + 2 NA intron (NM_001277962, intron 2 of 12) intron (NM_001277962, intron 2 of 12) -114787 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 265-285 chr4 135801920 135802130 + 2 NA Intergenic Intergenic 86068 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 423-233 chr5 125689698 125690066 + 2 NA Intergenic HAL1ME|LINE|L1 196621 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 238-106 chr14 79931382 79931522 + 2 NA Intergenic MLT2D|LTR|ERVL -279967 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 290-284 chr3 86789507 86789787 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 201502 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 206-234 chr6 56089688 56089859 + 2 NA intron (NM_030820, intron 17 of 29) intron (NM_030820, intron 17 of 29) 1889 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 333-108 chr12 12705877 12706120 + 2 NA Intergenic Intergenic -9815 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 384-321 chr6 125432486 125432848 + 2 NA Intergenic MER5C|DNA|hAT-Charlie -130700 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 276-492 chrX 79049793 79050004 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 104507 NM_014499 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 290-296 chr3 164276297 164276516 + 2 NA Intergenic L1M3e|LINE|L1 -104850 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 379-351 chr8 113905990 113906236 + 2 NA Intergenic Intergenic -469174 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 185-187 chr6 163934593 163934743 + 2 NA Intergenic L2a|LINE|L2 -263184 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 566-161 chr5 157653847 157654269 + 2 NA intron (NM_001308165, intron 2 of 5) AluSz|SINE|Alu -1620 NM_178424 11063 Hs.529462 NM_007017 ENSG00000039600 SOX30 - SRY-box transcription factor 30 protein-coding 227-347 chr7 49563016 49563196 + 2 NA Intergenic Intergenic -210532 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 218-271 chr5 102502991 102503174 + 2 NA Intergenic Intergenic -4081 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 420-23 chr1 212015791 212016199 + 2 NA intron (NM_015434, intron 4 of 19) L1ME4a|LINE|L1 -19558 NM_001286230 51514 Hs.656473 NM_016448 ENSG00000143476 DTL CDT2|DCAF2|L2DTL|RAMP denticleless E3 ubiquitin protein ligase homolog protein-coding 337-97 chr11 92735564 92735850 + 2 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 179921 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 278-186 chr19 14672499 14672725 + 2 NA intron (NM_032571, intron 1 of 15) L1M2|LINE|L1 2232 NM_001289159 84658 Hs.658712 NM_032571 ENSG00000131355 ADGRE3 EMR3 adhesion G protein-coupled receptor E3 protein-coding 270-177 chr2 46649401 46649650 + 2 NA Intergenic Intergenic 32310 NM_014171 9419 Hs.133998 NM_014171 ENSG00000119878 CRIPT HSPC139|SSMDF CXXC repeat containing interactor of PDZ3 domain protein-coding 229-361 chr7 52554388 52554606 + 2 NA Intergenic Intergenic -481136 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 276-185 chr16 81347610 81347777 + 2 NA intron (NM_022041, intron 1 of 10) HAL1|LINE|L1 32727 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 413-162 chr2 221007235 221007480 + 2 NA Intergenic L1M5|LINE|L1 564947 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 255-59 chr11 48212313 48212561 + 2 NA Intergenic Intergenic -4373 NM_001005470 119765 Hs.553566 NM_001005470 ENSG00000175619 OR4B1 OR11-106|OST208 olfactory receptor family 4 subfamily B member 1 protein-coding 311-88 chr11 112645278 112645564 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -89619 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 168-125 chr9 28502266 28502399 + 2 NA intron (NM_152570, intron 2 of 6) L2|LINE|L2 216973 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 767-4 chr1 192551513 192552044 + 2 NA Intergenic AluSx1|SINE|Alu -23995 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 277-224 chr20 13384061 13384213 + 2 NA Intergenic Intergenic -144450 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 233-230 chr3 40667014 40667194 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 142144 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 294-515 chrX 58458085 58458260 + 2 NA Intergenic ALR/Alpha|Satellite|centr -547539 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 544-117 chr2 84176087 84176484 + 2 NA Intergenic FordPrefect_a|DNA|hAT-Tip100 -114397 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 174-18 chr10 94503406 94503577 + 2 NA intron (NM_015188, intron 6 of 12) L1M5|LINE|L1 -42276 NM_001289070 3070 Hs.463677 NM_018063 ENSG00000119969 HELLS ICF4|LSH|Nbla10143|PASG|SMARCA6 helicase, lymphoid specific protein-coding 302-343 chr5 15071629 15071822 + 2 NA Intergenic MLT2D|LTR|ERVL 194835 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 238-41 chr10 56337151 56337368 + 2 NA Intergenic L1M4c|LINE|L1 24000 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 361-487 chrX 63979130 63979474 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -193215 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 369-333 chr5 107031677 107031979 + 2 NA Intergenic Intergenic -20814 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 295-368 chr5 5636642 5636909 + 2 NA Intergenic MER20|DNA|hAT-Charlie 214098 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 770-17 chr14 40394820 40395409 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -559597 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 669-83 chr4 176353298 176353892 + 2 NA Intergenic MER4-int|LTR|ERV1 33629 NM_021928 60559 Hs.42194 NM_021928 ENSG00000129128 SPCS3 PRO3567|SPC22/23|SPC3|YLR066W signal peptidase complex subunit 3 protein-coding 638-123 chr5 79575254 79575732 + 2 NA Intergenic AluSx4|SINE|Alu -36924 NM_001114394 167153 Hs.418198 NM_173797 ENSG00000164329 TENT2 APD4|GLD2|PAPD4|TUT2 terminal nucleotidyltransferase 2 protein-coding 531-175 chr4 52874226 52874681 + 2 NA intron (NM_152540, intron 8 of 8) intron (NM_152540, intron 8 of 8) 12136 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 399-151 chr2 80779787 80780115 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 466572 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 590-142 chr6 40524934 40525391 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 62202 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 325-311 chr20 44363218 44363461 + 2 NA intron (NM_175914, intron 1 of 9) intron (NM_175914, intron 1 of 9) 7538 NM_175914 3172 Hs.116462 NM_000457 ENSG00000101076 HNF4A FRTS4|HNF4|HNF4a7|HNF4a8|HNF4a9|HNF4alpha|MODY|MODY1|NR2A1|NR2A21|TCF|TCF14 hepatocyte nuclear factor 4 alpha protein-coding 202-208 chr5 74573567 74573761 + 2 NA Intergenic MER97b|DNA|hAT-Tip100 -36688 NR_126354 104310351 Hs.582291 NR_126354 ENSG00000248673 LINC01331 - long intergenic non-protein coding RNA 1331 ncRNA 688-85 chr4 153015624 153016162 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 72910 NM_033393 85462 Hs.132629 NM_033393 ENSG00000137460 FHDC1 - FH2 domain containing 1 protein-coding 601-60 chr18 769004 769485 + 2 NA intron (NM_005433, intron 1 of 11) Tigger3a|DNA|TcMar-Tigger 42998 NM_005433 7525 Hs.194148 NM_005433 ENSG00000176105 YES1 HsT441|P61-YES|Yes|c-yes YES proto-oncogene 1, Src family tyrosine kinase protein-coding 212-248 chr4 161715966 161716136 + 2 NA intron (NM_001128428, intron 6 of 14) L2a|LINE|L2 -306682 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 497-174 chr3 45814441 45814815 + 2 NA Intergenic Intergenic -18092 NM_022405 54716 Hs.413095 NM_020208 ENSG00000163817 SLC6A20 SIT1|XT3|Xtrp3 solute carrier family 6 member 20 protein-coding 239-222 chr21 25744370 25744571 + 2 NA intron (NM_001197297, intron 2 of 9) intron (NM_001197297, intron 2 of 9) -8816 NM_001320266 522 Hs.246310 NM_001685 ENSG00000154723 ATP5PF ATP5|ATP5A|ATP5J|ATPM|CF6|F6 ATP synthase peripheral stalk subunit F6 protein-coding 489-161 chr20 15824890 15825245 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 98247 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 411-146 chr2 67536128 67536435 + 2 NA Intergenic L1PB3|LINE|L1 138948 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 416-184 chr2 157408565 157408936 + 2 NA Intergenic L1MC3|LINE|L1 -28241 NR_034169 728066 Hs.470311 NR_034169 FAM133DP - family with sequence similarity 133, member A pseudogene pseudo 359-381 chr5 7010152 7010457 + 2 NA Intergenic Intergenic -182383 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 472-123 chr17 52311633 52311943 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -78734 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 317-519 chr8 142025355 142025594 + 2 NA Intergenic Intergenic -150865 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 469-115 chr18 7681252 7681608 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 114114 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 416-227 chr3 104162383 104162747 + 2 NA Intergenic Intergenic -638449 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 591-175 chr9 90474637 90475045 + 2 NA intron (NR_034157, intron 5 of 5) L1MDb|LINE|L1 -41352 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 350-208 chr2 28568274 28568481 + 2 NA intron (NR_138141, intron 1 of 35) intron (NR_138141, intron 1 of 35) 2020 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 404-324 chr8 115193116 115193448 + 2 NA Intergenic Intergenic 474731 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 292-346 chr5 31031701 31031960 + 2 NA Intergenic Intergenic -161856 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 405-189 chr21 37348431 37348787 + 2 NA Intergenic L1MEg|LINE|L1 -16964 NM_001396 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 343-497 chr7 10356627 10356949 + 2 NA Intergenic L1M1|LINE|L1 -345888 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 335-109 chr11 114385250 114385445 + 2 NA Intergenic L2c|LINE|L2 -5308 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 311-516 chr8 112814369 112814595 + 2 NA intron (NM_001363185, intron 10 of 66) intron (NM_001363185, intron 10 of 66) 170989 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 557-20 chr10 65120974 65121369 + 2 NA Intergenic L1PA17|LINE|L1 -196653 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 736-18 chr12 21146211 21146629 + 2 NA intron (NM_006446, intron 2 of 14) L1MCa|LINE|L1 15226 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 225-265 chr5 13402163 13402366 + 2 NA Intergenic L1MC3|LINE|L1 -369378 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 442-184 chr3 34176972 34177333 + 2 NA Intergenic Intergenic 378522 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 329-289 chr2 139244188 139244383 + 2 NA Intergenic Intergenic 346961 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 349-182 chr15 61264131 61264431 + 2 NA Intergenic L1MC4|LINE|L1 -34979 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 134-27 chr14 32622231 32622307 + 2 NA intron (NM_004274, intron 7 of 13) intron (NM_004274, intron 7 of 13) 292971 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 277-214 chr2 195442391 195442620 + 2 NA Intergenic L1M2|LINE|L1 -214453 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 318-380 chr3 193066565 193066805 + 2 NA Intergenic Intergenic -148829 NM_178496 151963 Hs.151443 NM_178496 ENSG00000180611 MB21D2 C3orf59 Mab-21 domain containing 2 protein-coding 389-223 chr3 46966621 46966851 + 2 NA intron (NM_144716, intron 2 of 7) intron (NM_144716, intron 2 of 7) 9765 NR_102269 151903 Hs.631918 NM_144716 ENSG00000160799 CCDC12 - coiled-coil domain containing 12 protein-coding 226-213 chr3 5612737 5612894 + 2 NA Intergenic Intergenic -362560 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 291-171 chr17 35220604 35220860 + 2 NA Intergenic Intergenic -22340 NM_001330183 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 361-159 chr15 100694941 100695213 + 2 NA Intergenic Intergenic 92488 NM_198243 140460 Hs.31845 NM_024708 ENSG00000183475 ASB7 - ankyrin repeat and SOCS box containing 7 protein-coding 315-305 chr3 27349062 27349339 + 2 NA intron (NM_152534, intron 4 of 38) intron (NM_152534, intron 4 of 38) 20183 NM_199347 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 512-136 chr2 180451471 180451891 + 2 NA Intergenic Intergenic -240423 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 327-137 chr13 71078617 71078912 + 2 NA intron (NR_047699, intron 1 of 3) intron (NR_047699, intron 1 of 3) 63623 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 228-195 chr21 19200261 19200437 + 2 NA Intergenic Intergenic -440537 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 561-216 chr9 86779315 86779717 + 2 NA Intergenic Intergenic 167990 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 162-19 chr10 77695223 77695355 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie -57481 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 260-262 chr3 34590701 34590902 + 2 NA Intergenic L1PA15|LINE|L1 792171 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 325-159 chr14 33293227 33293412 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 354440 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 249-368 chr6 164050441 164050647 + 2 NA Intergenic L3|LINE|CR1 -379060 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 221-123 chr18 39334289 39334436 + 2 NA intron (NR_024391, intron 3 of 3) MLT1I|LTR|ERVL-MaLR 287813 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 246-93 chr12 42259234 42259405 + 2 NA Intergenic MER31A|LTR|ERV1 -20951 NR_135139 10138 Hs.649195 NM_005748 ENSG00000015153 YAF2 - YY1 associated factor 2 protein-coding 347-321 chr3 132064793 132065094 + 2 NA Intergenic HAL1b|LINE|L1 -25337 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 347-563 chrX 82088027 82088225 + 2 NA Intergenic MER57-int|LTR|ERV1 886024 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 337-9 chr1 73244187 73244395 + 2 NA Intergenic L1PA16|LINE|L1 -61879 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 309-114 chr12 90167623 90167789 + 2 NA Intergenic L4_B_Mam|LINE|RTE-X -125612 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 269 chr1 2996697 2996933 + 2 NA Intergenic L1MC4a|LINE|L1 -24652 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 380-301 chr5 40665735 40666077 + 2 NA Intergenic MIR3|SINE|MIR -14009 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 368-121 chr12 131587055 131587353 + 2 NA Intergenic MER52A|LTR|ERV1 60917 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 364-352 chr5 96045736 96046024 + 2 NA intron (NR_130776, intron 1 of 4) L2a|LINE|L2 -33258 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 366-180 chr19 36693434 36693631 + 2 NA intron (NM_001322920, intron 3 of 6) intron (NM_001322920, intron 3 of 6) 5920 NM_001322911 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 272-385 chr6 56793159 56793336 + 2 NA intron (NM_001144770, intron 2 of 94) L1MC4|LINE|L1 50418 NM_183380 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 744-16 chr11 122481557 122482104 + 2 NA Intergenic L1MA2|LINE|L1 -58959 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 297-64 chr11 6094727 6094966 + 2 NA Intergenic Intergenic -12838 NM_001005181 196335 Hs.632154 NM_001005181 ENSG00000180919 OR56B4 OR11-67 olfactory receptor family 56 subfamily B member 4 protein-coding 470-71 chr14 52610938 52611344 + 2 NA intron (NM_001099652, intron 3 of 6) intron (NM_001099652, intron 3 of 6) 58305 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 187-147 chr6 36092700 36092842 + 2 NA intron (NM_001315, intron 8 of 11) intron (NM_001315, intron 8 of 11) -37742 NR_072996 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 457-189 chr4 160339144 160339438 + 2 NA Intergenic L1PA7|LINE|L1 -561507 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 590-123 chr4 57685597 57686020 + 2 NA Intergenic Intergenic 259936 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 319-535 chr8 93619642 93619844 + 2 NA intron (NR_033858, intron 5 of 10) intron (NR_033858, intron 5 of 10) 80690 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 259-232 chr20 42677502 42677732 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -7866 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 478-64 chr12 52483077 52483390 + 2 NA Intergenic L1MA5A|LINE|L1 -9428 NM_173086 286887 Hs.709234 NM_173086 ENSG00000170465 KRT6C K6E|KRT6E|PPKNEFD keratin 6C protein-coding 298-196 chr2 6722286 6722572 + 2 NA Intergenic MIR|SINE|MIR 47882 NR_038369 400941 Hs.446195 NM_001001695 ENSG00000205837 LINC00487 - long intergenic non-protein coding RNA 487 ncRNA 411-184 chr3 102441216 102441509 + 2 NA intron (NM_175056, intron 2 of 10) MER5B|DNA|hAT-Charlie 6347 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 215-99 chr16 47208978 47209153 + 2 NA intron (NM_030790, intron 14 of 17) intron (NM_030790, intron 14 of 17) 64997 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 490-65 chr12 15603805 15604165 + 2 NA Intergenic MIRb|SINE|MIR 57374 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 146-7 chr1 207112059 207112178 + 2 NA intron (NM_000715, intron 1 of 11) intron (NM_000715, intron 1 of 11) 7885 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 428-62 chr13 101210063 101210405 + 2 NA intron (NM_001350749, intron 13 of 43) intron (NM_001350749, intron 13 of 43) 206274 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 660-51 chr2 226231347 226231752 + 2 NA Intergenic MLT2F|LTR|ERVL 88755 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 347-320 chr3 130569234 130569463 + 2 NA intron (NM_001102608, intron 5 of 35) intron (NM_001102608, intron 5 of 35) 9014 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 561-121 chr22 47970673 47971178 + 2 NA Intergenic Intergenic -303439 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 297-135 chr14 52258880 52259052 + 2 NA Intergenic Intergenic -8732 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 217-86 chr12 48740299 48740448 + 2 NA intron (NM_001351125, intron 2 of 4) L1MC4|LINE|L1 12938 NM_001351123 255411 Hs.404103 NM_001351123 ENSG00000257987 TEX49 LINC00935 testis expressed 49 protein-coding 255-279 chr3 191563128 191563319 + 2 NA intron (NR_120606, intron 4 of 6) intron (NR_120606, intron 4 of 6) 102060 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 243-81 chr11 112593712 112593886 + 2 NA Intergenic Intergenic -37997 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 262-171 chr17 65632813 65633030 + 2 NA Intergenic Intergenic -71273 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 301-260 chr20 61375240 61375416 + 2 NA intron (NM_001794, intron 2 of 15) (GTG)n|Simple_repeat|Simple_repeat 123067 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 245-270 chr5 7048338 7048496 + 2 NA Intergenic Intergenic -220496 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 288-271 chr3 102927197 102927461 + 2 NA Intergenic Intergenic 492314 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 376-358 chr6 157842018 157842363 + 2 NA intron (NM_016224, intron 1 of 17) intron (NM_016224, intron 1 of 17) 18944 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 385-312 chr5 172519340 172519555 + 2 NA Intergenic L1MC1|LINE|L1 39567 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 349-478 chr7 89423069 89423304 + 2 NA Intergenic Intergenic -627449 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 133-27 chr15 97751893 97752013 + 2 NA intron (NR_024173, intron 1 of 1) intron (NR_024173, intron 1 of 1) 122476 NR_024172 91948 Hs.130423 NR_024172 ENSG00000251209 LINC00923 - long intergenic non-protein coding RNA 923 ncRNA 316-415 chr4 180100970 180101141 + 2 NA Intergenic L1PA15|LINE|L1 1058094 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 226-322 chr7 33295005 33295161 + 2 NA intron (NM_198428, intron 9 of 22) intron (NM_198428, intron 9 of 22) 165519 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 254-131 chr15 68185010 68185251 + 2 NA intron (NM_016166, intron 13 of 13) Tigger3|DNA|TcMar-Tigger 20980 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 175-10 chr1 114134266 114134418 + 2 NA intron (NM_001366223, intron 3 of 7) intron (NM_001366223, intron 3 of 7) 18098 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 346-345 chr4 31198075 31198413 + 2 NA intron (NR_125935, intron 4 of 4) MSTB1|LTR|ERVL-MaLR 27100 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 263-442 chr9 22547212 22547444 + 2 NA Intergenic Intergenic -98872 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 229-113 chr14 56887223 56887395 + 2 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 74151 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 153-22 chr12 4880611 4880727 + 2 NA Intergenic Intergenic -29236 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 1464-3 chr10 29294585 29295593 + 2 NA intron (NM_032517, intron 3 of 4) intron (NM_032517, intron 3 of 4) 6019 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 368-382 chr5 169829644 169829851 + 2 NA intron (NR_156756, intron 26 of 52) ORSL-2a|DNA|hAT-Tip100 150748 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 329-618 chrX 12751839 12752101 + 2 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -39385 NM_002765 5634 Hs.654581 NM_002765 ENSG00000101911 PRPS2 PRSII phosphoribosyl pyrophosphate synthetase 2 protein-coding 234-326 chr5 167291254 167291425 + 2 NA intron (NM_001122679, intron 2 of 29) intron (NM_001122679, intron 2 of 29) -122938 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 520-203 chr4 30666347 30666793 + 2 NA Intergenic LTR32|LTR|ERVL -53799 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 184-10 chr1 115621028 115621175 + 2 NA Intergenic L1MEc|LINE|L1 -20869 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 218-120 chr16 62488211 62488394 + 2 NA Intergenic L1MC3|LINE|L1 -451864 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 354-306 chr3 116841490 116841799 + 2 NA Intergenic Intergenic 8723 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 380-83 chr12 4074103 4074310 + 2 NA Intergenic L1MC3|LINE|L1 -199556 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 345-423 chr5 68783229 68783557 + 2 NA Intergenic L2|LINE|L2 246534 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 221-100 chr16 20020977 20021131 + 2 NA Intergenic Intergenic 52724 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 356-455 chr7 70295064 70295244 + 2 NA TTS (NM_001127232) TTS (NM_001127232) 696679 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 167-9 chr1 109115763 109115915 + 2 NA intron (NM_001284352, intron 1 of 20) intron (NM_001284352, intron 1 of 20) 1724 NM_020775 57535 Hs.708190 NM_020775 ENSG00000116299 KIAA1324 EIG121 KIAA1324 protein-coding 175-133 chr5 93712107 93712205 + 2 NA intron (NM_032042, intron 10 of 10) L1M4a1|LINE|L1 29444 NM_153216 134187 Hs.678995 NM_153216 ENSG00000248483 POU5F2 SPRM-1 POU domain class 5, transcription factor 2 protein-coding 489-68 chr13 86584884 86585296 + 2 NA Intergenic L1ME3A|LINE|L1 -326830 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 628-112 chr6 61849945 61850481 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 276083 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 727-55 chr3 95910685 95911116 + 2 NA Intergenic MER52D|LTR|ERV1 -227707 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 351-412 chr6 38819523 38819779 + 2 NA intron (NM_001371, intron 25 of 91) L1M5|LINE|L1 104340 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 319-180 chr16 77145152 77145374 + 2 NA Intergenic L1MEg|LINE|L1 -45927 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 235-29 chr10 4336580 4336732 + 2 NA Intergenic MER117|DNA|hAT-Charlie -47590 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 579-110 chr4 43590728 43591219 + 2 NA Intergenic Intergenic -98430 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 335-49 chr10 46046081 46046381 + 2 NA promoter-TSS (NM_002443) promoter-TSS (NM_002443) 38 NM_002443 4477 Hs.255462 NM_002443 ENSG00000263639 MSMB HPC13|IGBF|MSP|MSPB|PN44|PRPS|PSP|PSP-94|PSP57|PSP94 microseminoprotein beta protein-coding 414-122 chr17 57389728 57390041 + 2 NA intron (NM_001322250, intron 5 of 13) intron (NM_001322250, intron 5 of 13) 132865 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 164-110 chr8 80366657 80366773 + 2 NA Intergenic Intergenic -118878 NM_001277145 65986 Hs.591868 NM_023929 ENSG00000205189 ZBTB10 RINZF zinc finger and BTB domain containing 10 protein-coding 406-100 chr15 91420185 91420456 + 2 NA Intergenic L1MA3|LINE|L1 -43019 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 512-171 chr3 100845181 100845569 + 2 NA intron (NM_001349330, intron 18 of 61) intron (NM_001349330, intron 18 of 61) 135833 NM_001195478 10342 Hs.518123 NM_006070 ENSG00000114354 TFG HMSNP|SPG57|TF6|TRKT3 trafficking from ER to golgi regulator protein-coding 636-38 chr13 58617339 58617901 + 2 NA Intergenic Intergenic -384503 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 277-167 chr18 69477508 69477692 + 2 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) 7669 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 306-288 chr20 61855688 61855894 + 2 NA intron (NM_001252339, intron 5 of 14) intron (NM_001252339, intron 5 of 14) 97871 NR_031658 100302168 NR_031658 ENSG00000284193 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 276-142 chr14 44680093 44680342 + 2 NA Intergenic Intergenic 118909 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 530-207 chr5 144225612 144226101 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 20465 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 533-3 chr1 48585609 48586045 + 2 NA intron (NM_001323575, intron 11 of 12) intron (NM_001323575, intron 11 of 12) -113619 NM_001286239 54558 Hs.538103 NM_019073 ENSG00000132122 SPATA6 HASH|SRF-1|SRF1 spermatogenesis associated 6 protein-coding 154-45 chr2 12253284 12253411 + 2 NA intron (NR_110196, intron 3 of 5) (TATA)n|Simple_repeat|Simple_repeat 54217 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 335-111 chr11 132811767 132812094 + 2 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 131707 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 243-340 chr4 160668135 160668364 + 2 NA Intergenic Intergenic -890465 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 153-72 chr4 26539387 26539502 + 2 NA Intergenic Intergenic -44480 NM_001292054 55296 Hs.479403 NM_018317 ENSG00000109680 TBC1D19 - TBC1 domain family member 19 protein-coding 584-107 chr3 154887834 154888181 + 2 NA Intergenic AluSz6|SINE|Alu -136117 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 563-19 chr10 56254123 56254659 + 2 NA Intergenic L1PA10|LINE|L1 106868 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 222-191 chr2 141913156 141913345 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 218451 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 257-87 chr12 24768672 24768851 + 2 NA Intergenic LTR16E1|LTR|ERVL 133461 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 407-285 chr7 25721067 25721468 + 2 NA intron (NR_157808, intron 1 of 4) intron (NR_157808, intron 1 of 4) 29765 NR_157815 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 458-212 chr5 144665098 144665525 + 2 NA Intergenic Intergenic 459920 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 195-205 chr5 153178497 153178631 + 2 NA Intergenic L1MA9|LINE|L1 -206215 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 225-344 chr8 35421913 35422108 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) -122382 NM_001322818 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 387-250 chr4 41301644 41301981 + 2 NA Intergenic L1PA17|LINE|L1 44884 NM_004181 7345 Hs.518731 NM_004181 ENSG00000154277 UCHL1 HEL-117|HEL-S-53|NDGOA|PARK5|PGP 9.5|PGP9.5|PGP95|SPG79|Uch-L1 ubiquitin C-terminal hydrolase L1 protein-coding 329-450 chr5 30105397 30105571 + 2 NA Intergenic Intergenic 224924 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 542-153 chr4 84141804 84142330 + 2 NA intron (NR_125909, intron 7 of 8) L1MC1|LINE|L1 157102 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 344-13 chr1 80280777 80280968 + 2 NA Intergenic Intergenic -254883 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 237-383 chr8 105823135 105823314 + 2 NA intron (NR_125796, intron 2 of 7) L1MC4a|LINE|L1 237279 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 518-172 chr3 35129195 35129626 + 2 NA intron (NR_110817, intron 2 of 3) L1MB8|LINE|L1 264613 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 369-20 chr1 204333347 204333612 + 2 NA intron (NM_014935, intron 1 of 22) MIRc|SINE|MIR 26450 NM_014935 22874 Hs.253146 NM_014935 ENSG00000143850 PLEKHA6 PEPP-3|PEPP3 pleckstrin homology domain containing A6 protein-coding 785-52 chr6 100067830 100068509 + 2 NA intron (NR_038384, intron 2 of 2) L1M3b|LINE|L1 -73931 NM_032503 84539 Hs.591342 NM_032503 ENSG00000152034 MCHR2 GPR145|GPRv17|MCH-2R|MCH-R2|MCH2|MCH2R|MCHR-2|SLT melanin concentrating hormone receptor 2 protein-coding 326-77 chr10 75479043 75479222 + 2 NA intron (NM_001305581, intron 2 of 6) L2a|LINE|L2 47508 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 206-137 chr20 7593431 7593602 + 2 NA Intergenic Intergenic 221908 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 341-580 chrX 93301526 93301716 + 2 NA Intergenic Intergenic 371957 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 209-353 chrX 43771502 43771695 + 2 NA intron (NM_000898, intron 12 of 14) intron (NM_000898, intron 12 of 14) 110852 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 485-326 chrX 115932464 115932893 + 2 NA intron (NR_130730, intron 2 of 2) L1MA1|LINE|L1 36433 NR_132337 642776 Hs.634316 NR_130730 ENSG00000235244 DANT2 - DXZ4 associated non-coding transcript 2, distal ncRNA 259-197 chr2 75719601 75719769 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -8770 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 336-480 chr6 40000274 40000446 + 2 NA Intergenic Intergenic -65898 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 165-49 chr2 56046637 56046777 + 2 NA intron (NR_126406, intron 1 of 2) intron (NR_126406, intron 1 of 2) 619 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 408-361 chrX 58181797 58182186 + 2 NA Intergenic ALR/Alpha|Satellite|centr -271358 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 268-80 chr12 24656096 24656340 + 2 NA Intergenic L1MA3|LINE|L1 -72050 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 319-55 chr10 50490173 50490390 + 2 NA intron (NM_147156, intron 3 of 10) intron (NM_147156, intron 3 of 10) 133675 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 465-297 chr8 121217709 121218033 + 2 NA Intergenic Intergenic -405825 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 320-93 chr11 88526059 88526285 + 2 NA intron (NM_001143831, intron 7 of 8) intron (NM_001143831, intron 7 of 8) 21596 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 352-78 chr11 55253277 55253546 + 2 NA Intergenic ALR/Alpha|Satellite|centr -8744 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 489-95 chr16 13372050 13372416 + 2 NA Intergenic Intergenic 470635 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 256-379 chr7 13013788 13013962 + 2 NA Intergenic Intergenic 326242 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 615-143 chr8 137984848 137985419 + 2 NA intron (NR_161374, intron 2 of 7) MER1A|DNA|hAT-Charlie 98412 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 307-475 chr8 54678706 54678921 + 2 NA Intergenic Intergenic 62717 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 250-154 chr17 3158262 3158493 + 2 NA intron (NR_147912, intron 3 of 3) L1M7|LINE|L1 18558 NR_147912 100288728 Hs.579219 NR_147912 ENSG00000261848 LOC100288728 - uncharacterized LOC100288728 ncRNA 184-86 chr2 48150057 48150192 + 2 NA Intergenic L1MEd|LINE|L1 -164558 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 233-393 chr8 144564222 144564382 + 2 NA intron (NM_025251, intron 2 of 10) L2a|LINE|L2 -35191 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 895-18 chr2 81292123 81292825 + 2 NA Intergenic L1MEi|LINE|L1 174472 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 519-107 chr2 82439269 82439722 + 2 NA Intergenic Intergenic -417308 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 538-259 chr9 117257112 117257484 + 2 NA intron (NM_014010, intron 2 of 21) L3|LINE|CR1 -76097 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 445-189 chr4 31692077 31692371 + 2 NA Intergenic L1M5|LINE|L1 185680 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 330-503 chr7 145179813 145179983 + 2 NA Intergenic Intergenic -343845 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 310-142 chr14 71748972 71749141 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 162758 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 297-354 chr5 8803186 8803452 + 2 NA Intergenic L1PB1|LINE|L1 -36413 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 359-282 chr20 24015962 24016274 + 2 NA Intergenic Intergenic -27339 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 488-242 chr6 122687987 122688327 + 2 NA intron (NM_181795, intron 3 of 4) L1MA2|LINE|L1 35428 NM_001270395 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 232-154 chr19 52459504 52459666 + 2 NA intron (NM_001366182, intron 3 of 5) L1MB2|LINE|L1 6032 NM_001099694 147660 Hs.157287 NM_152472 ENSG00000258405 ZNF578 - zinc finger protein 578 protein-coding 872-46 chr7 96739216 96739805 + 2 NA Intergenic Intergenic -29619 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 593-147 chr8 58376667 58377215 + 2 NA Intergenic AluJb|SINE|Alu -34323 NM_001330535 137886 Hs.155572 NM_001077619 ENSG00000215114 UBXN2B p37 UBX domain protein 2B protein-coding 438-265 chr7 149366320 149366668 + 2 NA Intergenic L1MD2|LINE|L1 81213 NR_036573 155060 Hs.490512 NR_015357 ENSG00000244560 LOC155060 - AI894139 pseudogene pseudo 359-392 chr5 64050654 64050919 + 2 NA Intergenic LTR28C|LTR|ERV1 -88494 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 351-387 chr5 85467178 85467495 + 2 NA Intergenic L1MCa|LINE|L1 -815108 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 231-232 chr3 89612938 89613163 + 2 NA Intergenic L1MB7|LINE|L1 505429 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 331-205 chr17 57213629 57213904 + 2 NA Intergenic AluJb|SINE|Alu -42085 NM_001322250 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 253-42 chr10 10454014 10454200 + 2 NA intron (NR_120637, intron 1 of 3) intron (NR_120637, intron 1 of 3) 8242 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 475-137 chr2 107560555 107560997 + 2 NA Intergenic Intergenic 31357 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 183-158 chr8 87270645 87270751 + 2 NA intron (NM_173538, intron 6 of 10) L1M2|LINE|L1 404283 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 446-146 chr2 65778156 65778456 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -345707 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 559-29 chr11 121799990 121800377 + 2 NA Intergenic Intergenic 299661 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 212-178 chr2 198814140 198814314 + 2 NA Intergenic Intergenic -439130 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 283-391 chr6 53297630 53297810 + 2 NA intron (NM_001242830, intron 1 of 6) MER44B|DNA|TcMar-Tigger 20727 NR_049866 100847075 NR_049866 ENSG00000264056 MIR5685 - microRNA 5685 ncRNA 263-348 chr6 16943612 16943811 + 2 NA Intergenic Intergenic -158547 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 423-300 chr8 123591783 123592053 + 2 NA Intergenic Charlie16a|DNA|hAT-Charlie -50712 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 536-228 chr8 77116278 77116645 + 2 NA Intergenic LTR79|LTR|ERVL -115417 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 595-28 chr11 41841781 41842274 + 2 NA Intergenic L1PA16|LINE|L1 127459 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 391-138 chr17 54349132 54349470 + 2 NA Intergenic Intergenic 526374 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 249-451 chr9 109210467 109210645 + 2 NA intron (NM_019114, intron 17 of 25) intron (NM_019114, intron 17 of 25) -43265 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 380-2 chr1 34542969 34543324 + 2 NA Intergenic L1MC2|LINE|L1 126548 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 595-90 chr2 133406720 133407079 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 140704 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 318-417 chr4 152832419 152832600 + 2 NA intron (NM_001025595, intron 2 of 8) L1ME3|LINE|L1 52555 NM_001025595 27236 Hs.416089 NM_014447 ENSG00000164144 ARFIP1 HSU52521 ADP ribosylation factor interacting protein 1 protein-coding 330-146 chr13 112695694 112695961 + 2 NA intron (NM_032189, intron 1 of 28) intron (NM_032189, intron 1 of 28) 5498 NM_015205 23250 Hs.29189 NM_015205 ENSG00000068650 ATP11A ATPIH|ATPIS ATPase phospholipid transporting 11A protein-coding 261-363 chr7 96128358 96128596 + 2 NA intron (NM_001160210, intron 15 of 17) intron (NM_001160210, intron 15 of 17) 91279 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 194-152 chr4 112955535 112955668 + 2 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -93813 NM_020977 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 197 chr1 23259127 23259309 + 2 NA Intergenic AluJb|SINE|Alu 26300 NR_110616 100996511 Hs.99836 NR_110616 LINC01355 - long intergenic non-protein coding RNA 1355 ncRNA 199-255 chr9 28009879 28010030 + 2 NA intron (NM_001354574, intron 5 of 5) L1MB8|LINE|L1 -436088 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 327-448 chr6 161573971 161574177 + 2 NA intron (NM_004562, intron 7 of 11) intron (NM_004562, intron 7 of 11) 103097 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 132-27 chr14 71430854 71430954 + 2 NA intron (NM_015556, intron 4 of 26) intron (NM_015556, intron 4 of 26) -8035 NM_001284247 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 217-372 chr8 117465318 117465467 + 2 NA Intergenic Intergenic -55321 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 729-42 chr2 145214457 145215124 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger 546823 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 322-508 chr7 145274017 145274262 + 2 NA Intergenic Intergenic -438086 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 296-333 chr4 46138884 46139057 + 2 NA Intergenic Intergenic -14916 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 720-66 chr5 18497305 18497750 + 2 NA Intergenic L1MDa|LINE|L1 690253 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 290-237 chr2 239261573 239261807 + 2 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) -43772 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 375-250 chr22 24715288 24715650 + 2 NA Intergenic Intergenic -49032 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 270-191 chr2 124898811 124898989 + 2 NA intron (NM_130773, intron 21 of 23) L1MA8|LINE|L1 873613 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 207-255 chr6 46007264 46007417 + 2 NA intron (NM_001370649, intron 1 of 5) intron (NM_001370649, intron 1 of 5) 8520 NM_016929 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 536-158 chr3 27089689 27090101 + 2 NA Intergenic Intergenic 126628 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 244-298 chr5 41999358 41999508 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 74152 NM_012176 26272 Hs.165575 NM_012176 ENSG00000151876 FBXO4 FBX4 F-box protein 4 protein-coding 390-395 chr8 126470440 126470646 + 2 NA Intergenic Intergenic 87935 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 313-308 chr20 42187386 42187687 + 2 NA intron (NM_133170, intron 17 of 31) intron (NM_133170, intron 17 of 31) -497947 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 253-276 chr3 175123831 175124005 + 2 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -8676 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 332-121 chr12 33492544 33492824 + 2 NA Intergenic L1PA7|LINE|L1 -52865 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 390-265 chr4 55296842 55297049 + 2 NA Intergenic MER41B|LTR|ERV1 -49297 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 337-334 chr3 6385385 6385683 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie 419915 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 395-154 chr19 36484689 36485026 + 2 NA intron (NM_001145344, intron 1 of 4) AluY|SINE|Alu 4578 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 315-82 chr11 37719494 37719747 + 2 NA Intergenic Intergenic -218981 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 343-127 chr13 82935639 82935943 + 2 NA Intergenic Intergenic 946602 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 409-51 chr12 58127711 58128069 + 2 NA Intergenic L1ME3G|LINE|L1 39998 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 191-90 chr19 37585900 37586076 + 2 NA non-coding (NR_038247, exon 5 of 5) non-coding (NR_038247, exon 5 of 5) 8758 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 313-450 chr5 145021367 145021636 + 2 NA Intergenic Intergenic 813841 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 284-111 chr14 45757513 45757790 + 2 NA Intergenic HERV1_LTRe|LTR|ERV1 -42049 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 236-95 chr12 126972102 126972279 + 2 NA intron (NR_104646, intron 4 of 6) intron (NR_104646, intron 4 of 6) 88207 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 312-317 chr3 2387324 2387514 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 148590 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 212-282 chr6 63725608 63725744 + 2 NA intron (NM_001292009, intron 43 of 43) intron (NM_001292009, intron 43 of 43) 79150 NM_015153 23469 Hs.348921 NM_015153 ENSG00000118482 PHF3 - PHD finger protein 3 protein-coding 369-194 chr2 48312380 48312687 + 2 NA Intergenic MIR3|SINE|MIR -2149 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 233-261 chr4 63207144 63207344 + 2 NA Intergenic Intergenic -1045479 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 326-387 chr4 167566097 167566325 + 2 NA Intergenic L1PA10|LINE|L1 -331621 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 417-105 chr17 33962681 33963002 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 193965 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 217-327 chr6 73190873 73191022 + 2 NA intron (NM_001160132, intron 12 of 13) MIR|SINE|MIR 34549 NM_001126063 100129128 Hs.663639 NM_001126063 ENSG00000256980 KHDC1L - KH domain containing 1 like protein-coding 231-33 chr10 33794580 33794727 + 2 NA Intergenic LTR8B|LTR|ERV1 -21973 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 207-295 chr8 101902372 101902569 + 2 NA intron (NM_001040624, intron 4 of 7) intron (NM_001040624, intron 4 of 7) -81962 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 297-453 chr8 11337582 11337835 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -1929 NR_001578 157739 Hs.583896 NR_001578 ENSG00000154316 TDH SDR14E1P L-threonine dehydrogenase (pseudogene) pseudo 728-56 chr20 24293116 24293661 + 2 NA Intergenic Intergenic 93621 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 269-254 chr3 86710400 86710650 + 2 NA Intergenic Intergenic 228582 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 613-35 chr15 36990422 36990949 + 2 NA intron (NM_172316, intron 8 of 12) L1MB8|LINE|L1 -17784 NR_107030 102466875 NR_107030 ENSG00000277202 MIR8063 hsa-mir-8063 microRNA 8063 ncRNA 257-408 chr8 82462418 82462587 + 2 NA Intergenic Intergenic -449602 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 392-281 chr6 95254703 95254972 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 322614 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 428-111 chr19 52370990 52371232 + 2 NA intron (NM_001145434, intron 1 of 3) intron (NM_001145434, intron 1 of 3) 1188 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 269-253 chr3 84906346 84906516 + 2 NA Intergenic Intergenic 24341 NR_147147 105377192 NR_147147 ENSG00000242339 LINC02025 - long intergenic non-protein coding RNA 2025 ncRNA 345-126 chr12 124290038 124290231 + 2 NA intron (NM_181709, intron 1 of 2) intron (NM_181709, intron 1 of 2) 970 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 353-24 chr1 117837710 117838057 + 2 NA Intergenic LTR33A_|LTR|ERVL 91738 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 335-494 chr7 24486146 24486420 + 2 NA Intergenic Intergenic -87169 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 636-95 chr3 76213671 76214114 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -428343 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 454-30 chr10 80557239 80557624 + 2 NA intron (NM_001145719, intron 1 of 6) L1M4|LINE|L1 16612 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 510-142 chr2 63346499 63346865 + 2 NA intron (NR_148704, intron 13 of 18) L1MEc|LINE|L1 91325 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 327-511 chr8 142072412 142072588 + 2 NA Intergenic Intergenic -103839 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 152-91 chr8 88780484 88780592 + 2 NA Intergenic L1M4|LINE|L1 -453055 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 285-206 chr2 130875236 130875476 + 2 NA intron (NM_001367493, intron 1 of 13) MSTB2|LTR|ERVL-MaLR 38442 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 427-186 chr4 78972510 78972912 + 2 NA intron (NR_038342, intron 1 of 5) intron (NR_038342, intron 1 of 5) 963 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 373-274 chr3 197186443 197186802 + 2 NA intron (NM_001290983, intron 5 of 25) intron (NM_001290983, intron 5 of 25) -2491 NM_001204387 1739 Hs.292549 NM_004087 ENSG00000075711 DLG1 DLGH1|SAP-97|SAP97|hdlg discs large MAGUK scaffold protein 1 protein-coding 326-195 chr17 28988384 28988620 + 2 NA intron (NM_001290202, intron 1 of 16) intron (NM_001290202, intron 1 of 16) 17531 NM_001098635 124925 Hs.21837 NM_178860 ENSG00000063015 SEZ6 BSRPC seizure related 6 homolog protein-coding 206-40 chr10 97271700 97271809 + 2 NA intron (NM_032900, intron 1 of 11) AluSq4|SINE|Alu -1097 NM_001256423 84986 Hs.80305 NM_032900 ENSG00000213390 ARHGAP19 - Rho GTPase activating protein 19 protein-coding 194-130 chr3 127282951 127283108 + 2 NA TTS (NM_001362810) TTS (NM_001362810) 5017 NM_001362810 100419008 NM_001362810 PRR20G - proline rich 20G protein-coding 339-420 chr4 105858729 105858920 + 2 NA Intergenic L1PA7|LINE|L1 -31652 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 272-298 chr4 42132868 42133035 + 2 NA intron (NM_207406, intron 3 of 5) intron (NM_207406, intron 3 of 5) 19704 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 756-43 chr3 171254781 171255425 + 2 NA intron (NM_001161563, intron 2 of 31) intron (NM_001161563, intron 2 of 31) -148344 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 139-75 chr5 127600400 127600509 + 2 NA Intergenic Intergenic -48567 NM_001048252 613212 Hs.66194 NM_001048252 ENSG00000205279 CTXN3 KABE cortexin 3 protein-coding 358-271 chr21 19470528 19470722 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR 429130 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 337-74 chr10 121028321 121028511 + 2 NA Intergenic L1M5|LINE|L1 177054 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 506-170 chr21 15048439 15048830 + 2 NA intron (NM_003489, intron 1 of 3) intron (NM_003489, intron 1 of 3) 16366 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 244-136 chr18 77504886 77505039 + 2 NA Intergenic L1MC|LINE|L1 255114 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 181-97 chr3 175451258 175451372 + 2 NA intron (NM_207015, intron 6 of 13) intron (NM_207015, intron 6 of 13) 81775 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 392-178 chr20 54505160 54505442 + 2 NA intron (NM_018431, intron 1 of 7) MER58A|DNA|hAT-Charlie 29708 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 375-160 chr16 79883350 79883614 + 2 NA Intergenic Intergenic 88233 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 266-299 chr4 98248492 98248682 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -12797 NM_021159 5910 Hs.132858 NM_021159 ENSG00000138698 RAP1GDS1 GDS1|SmgGDS Rap1 GTPase-GDP dissociation stimulator 1 protein-coding 507-9 chr1 99965861 99966284 + 2 NA Intergenic Intergenic -3924 NM_012243 23443 Hs.448979 NM_012243 ENSG00000117620 SLC35A3 AMRS solute carrier family 35 member A3 protein-coding 542-184 chr6 14175742 14176147 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 58172 NM_001040280 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 320-593 chr9 85526941 85527166 + 2 NA Intergenic Intergenic 214976 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 364-365 chr5 140012998 140013190 + 2 NA intron (NM_013983, intron 1 of 10) L2a|LINE|L2 30205 NM_001184935 9542 Hs.408515 NM_004883 ENSG00000158458 NRG2 DON1|HRG2|NTAK neuregulin 2 protein-coding 277-374 chr7 42672961 42673134 + 2 NA intron (NR_110833, intron 1 of 2) intron (NR_110833, intron 1 of 2) 33400 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 339-85 chr11 7745942 7746262 + 2 NA Intergenic Intergenic -39625 NM_001367963 341277 Hs.532475 NM_198185 ENSG00000183378 OVCH2 OVTN ovochymase 2 (gene/pseudogene) protein-coding 313-93 chr11 110648277 110648520 + 2 NA intron (NM_020809, intron 3 of 15) intron (NM_020809, intron 3 of 15) 63427 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 256-300 chr4 166639390 166639560 + 2 NA Intergenic L1ME3Cz|LINE|L1 594951 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 248-3 chr1 36901656 36901813 + 2 NA intron (NM_000831, intron 1 of 15) L1MC1|LINE|L1 132781 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 315-526 chrX 67681683 67681857 + 2 NA intron (NM_001011645, intron 3 of 8) L3|LINE|CR1 137147 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 480-245 chr5 173677895 173678343 + 2 NA Intergenic L2a|LINE|L2 -11340 NR_146727 105377736 Hs.582570 NR_146727 ENSG00000253428 LINC01942 - long intergenic non-protein coding RNA 1942 ncRNA 115-9 chr12 30821301 30821402 + 2 NA Intergenic Intergenic 25670 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 640-49 chr16 82066095 82066563 + 2 NA intron (NM_002153, intron 1 of 4) MamRep605|LTR?|LTR? 31076 NM_002153 3294 Hs.162795 NM_002153 ENSG00000086696 HSD17B2 EDH17B2|HSD17|SDR9C2 hydroxysteroid 17-beta dehydrogenase 2 protein-coding 528-83 chr14 65978148 65978458 + 2 NA Intergenic Intergenic 507201 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 353-87 chr11 81066093 81066294 + 2 NA Intergenic Intergenic -303390 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 422-170 chr21 18223971 18224366 + 2 NA intron (NM_001204178, intron 2 of 5) intron (NM_001204178, intron 2 of 5) -20665 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 143-8 chr10 60976333 60976453 + 2 NA intron (NM_001350906, intron 2 of 12) intron (NM_001350906, intron 2 of 12) 24604 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 503-41 chr10 105933955 105934340 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -113814 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 271-320 chr4 95239343 95239536 + 2 NA intron (NM_003728, intron 7 of 15) intron (NM_003728, intron 7 of 15) 147948 NM_001256794 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 180-62 chr17 27727149 27727267 + 2 NA Intergenic Intergenic 73321 NM_000625 4843 Hs.709191 NM_000625 ENSG00000007171 NOS2 HEP-NOS|INOS|NOS|NOS2A nitric oxide synthase 2 protein-coding 515-11 chr1 173626188 173626451 + 2 NA intron (NR_158771, intron 3 of 4) intron (NR_158771, intron 3 of 4) -9019 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 332-498 chr7 97375925 97376196 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 259467 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 272-70 chr11 25469120 25469329 + 2 NA Intergenic L1MD2|LINE|L1 -719899 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 329-100 chr11 87617980 87618214 + 2 NA Intergenic Intergenic 101314 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 113-8 chr11 81540930 81541031 + 2 NA Intergenic Intergenic 349856 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 290-407 chr7 18081229 18081413 + 2 NA Intergenic L1MA8|LINE|L1 -5504 NM_001321871 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 706-19 chr13 40296834 40297440 + 2 NA Intergenic LOR1-int|LTR|ERV1 -76635 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 272-365 chr5 151563598 151563781 + 2 NA intron (NM_001447, intron 1 of 22) intron (NM_001447, intron 1 of 22) 5255 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 217-105 chr13 72262321 72262468 + 2 NA Intergenic Intergenic -395190 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 498-58 chr11 96869515 96869887 + 2 NA Intergenic MER76-int|LTR|ERVL 361276 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 278-192 chr19 39214909 39215157 + 2 NA Intergenic Intergenic -10767 NM_001080468 342898 Hs.124123 NM_001080468 ENSG00000179751 SYCN INSSA1|SYL syncollin protein-coding 261-77 chr12 44190883 44191039 + 2 NA intron (NM_001286213, intron 3 of 6) (TA)n|Simple_repeat|Simple_repeat 354880 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 278-25 chr1 246144487 246144680 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 272829 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 410-136 chr2 63259602 63259875 + 2 NA intron (NR_148704, intron 14 of 18) intron (NR_148704, intron 14 of 18) -140196 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 413-317 chr8 139600939 139601155 + 2 NA non-coding (NR_104210, exon 4 of 4) non-coding (NR_104210, exon 4 of 4) 102076 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 390-133 chr16 62653406 62653619 + 2 NA Intergenic Intergenic -617074 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 332-6 chr1 43111199 43111412 + 2 NA Intergenic L1M4|LINE|L1 -36599 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 165-96 chr5 9392827 9392923 + 2 NA intron (NM_003966, intron 2 of 22) intron (NM_003966, intron 2 of 22) -118458 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 933-15 chr18 73377858 73378706 + 2 NA Intergenic L1ME1|LINE|L1 53341 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 497-236 chr5 117364139 117364540 + 2 NA Intergenic L1ME2|LINE|L1 -51173 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 213-130 chr2 24448453 24448617 + 2 NA Intergenic Intergenic -42719 NM_001362950 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 318-156 chr13 30180817 30181051 + 2 NA Intergenic Intergenic -27860 NR_138041 102157400 Hs.639879 NR_138041 LINC00384 - long intergenic non-protein coding RNA 384 ncRNA 318-306 chr2 212867097 212867337 + 2 NA Intergenic L1M4|LINE|L1 -59040 NR_039935 100616267 NR_039935 ENSG00000266354 MIR4776-1 mir-4776-1 microRNA 4776-1 ncRNA 356-10 chr1 75914484 75914762 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 17781 NR_026546 127247 Hs.125423 NM_080868 ENSG00000154007 ASB17 Asb-17 ankyrin repeat and SOCS box containing 17 protein-coding 214-113 chr16 6806623 6806782 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 32893 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 304-113 chr12 61435215 61435454 + 2 NA Intergenic LTR16E2|LTR|ERVL 757505 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 298-66 chr10 133496143 133496325 + 2 NA Intergenic HERVL-int|LTR|ERVL -31129 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 440-97 chr18 40559608 40559889 + 2 NA Intergenic X6A_LINE|LINE|CR1 493462 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 232-37 chr10 67290754 67290965 + 2 NA intron (NM_001127384, intron 5 of 17) intron (NM_001127384, intron 5 of 17) 112551 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 329-51 chr10 39151834 39152028 + 2 NA Intergenic ALR/Alpha|Satellite|centr 455335 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 131-11 chr10 67997329 67997447 + 2 NA intron (NM_001278185, intron 9 of 23) LTR37-int|LTR|ERV1 13495 NR_131184 100009667 NR_131184 POU5F1P5 Oct4-pg5 POU class 5 homeobox 1 pseudogene 5 pseudo 578-122 chr3 145195154 145195465 + 2 NA Intergenic Intergenic 873876 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 269-280 chr4 79145208 79145472 + 2 NA intron (NR_038342, intron 3 of 5) L1MC3|LINE|L1 173592 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 555-54 chr14 36867287 36867669 + 2 NA intron (NM_001171170, intron 2 of 10) L2b|LINE|L2 84913 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 374-174 chr2 19073252 19073520 + 2 NA Intergenic Intergenic -46415 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 243-406 chr6 162922741 162922892 + 2 NA intron (NM_001080379, intron 2 of 4) L1MA5|LINE|L1 131345 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 496-129 chr2 17482652 17483059 + 2 NA Intergenic Intergenic 35585 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 380-58 chr10 130333401 130333640 + 2 NA Intergenic MLT2D|LTR|ERVL 197111 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 350-553 chr9 38466093 38466417 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -41801 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 522-243 chr7 157947786 157948153 + 2 NA intron (NM_130843, intron 10 of 21) L1MB5|LINE|L1 93384 NR_038966 100506585 Hs.661265 NR_038966 LOC100506585 - uncharacterized LOC100506585 ncRNA 206-141 chr20 47716053 47716233 + 2 NA intron (NM_198596, intron 3 of 20) Charlie1a|DNA|hAT-Charlie 69921 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 231-137 chr18 64502256 64502446 + 2 NA Intergenic MIR|SINE|MIR -242296 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 338-303 chr20 60415301 60415527 + 2 NA Intergenic L1PB3|LINE|L1 57562 NR_109903 101928048 Hs.572803 NR_109903 LOC101928048 - uncharacterized LOC101928048 ncRNA 296-130 chr14 25215574 25215754 + 2 NA Intergenic Intergenic -165367 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 248-66 chr11 80464005 80464212 + 2 NA Intergenic L1PREC2|LINE|L1 298695 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 470-143 chr2 180497714 180498157 + 2 NA Intergenic Intergenic -194169 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 267-406 chr7 96884542 96884716 + 2 NA Intergenic L1ME3E|LINE|L1 -120924 NM_005222 1750 Hs.249196 NM_005222 ENSG00000006377 DLX6 - distal-less homeobox 6 protein-coding 225-18 chr1 209671596 209671775 + 2 NA intron (NR_134510, intron 1 of 2) intron (NR_134510, intron 1 of 2) 3564 NR_134511 101930114 Hs.663934 NR_134509 ENSG00000227591 HSD11B1-AS1 - HSD11B1 antisense RNA 1 ncRNA 467-275 chr8 34377034 34377376 + 2 NA Intergenic L2a|LINE|L2 -406716 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 152-74 chr4 84311651 84311759 + 2 NA Intergenic Intergenic -12536 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 314-612 chr9 84895161 84895410 + 2 NA intron (NM_001018064, intron 13 of 17) intron (NM_001018064, intron 13 of 17) 189384 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 768-54 chr8 99905155 99905778 + 2 NA Intergenic Intergenic -11759 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 246-280 chr3 176747487 176747688 + 2 NA Intergenic Intergenic 69414 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 311-531 chr8 138138930 138139117 + 2 NA exon (NM_001362965, exon 18 of 20) exon (NM_001362965, exon 18 of 20) -55478 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 356-237 chr2 56623935 56624194 + 2 NA Intergenic L2c|LINE|L2 -438294 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 231-100 chr14 81933924 81934123 + 2 NA Intergenic Intergenic -190885 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 240-375 chr6 57242303 57242516 + 2 NA Intergenic Intergenic -20095 NR_103822 51715 Hs.555016 NM_016277 ENSG00000112210 RAB23 HSPC137 RAB23, member RAS oncogene family protein-coding 408-319 chr7 84417229 84417569 + 2 NA Intergenic Intergenic -115077 NR_110080 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 709-73 chr5 18867972 18868503 + 2 NA Intergenic Intergenic 1018035 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 362-144 chr14 52559210 52559525 + 2 NA intron (NM_001353361, intron 1 of 7) AluSc8|SINE|Alu 6531 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 260-395 chr7 7268627 7268800 + 2 NA intron (NR_108073, intron 3 of 3) intron (NR_108073, intron 3 of 3) 13559 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 694-57 chr18 77635458 77636006 + 2 NA Intergenic Intergenic 357995 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 395-87 chr14 20510931 20511241 + 2 NA TTS (NM_001012975) TTS (NM_001012975) 614 NM_001012975 338879 Hs.451057 NM_001012975 ENSG00000182545 RNASE10 RAH1|RNASE9 ribonuclease A family member 10 (inactive) protein-coding 116-33 chr4 36764628 36764714 + 2 NA Intergenic Intergenic -122771 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 311-72 chr10 111488149 111488454 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 374010 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 332-395 chr4 174802613 174802788 + 2 NA intron (NM_006529, intron 1 of 9) LOR1a|LTR|ERV1 26547 NM_006529 8001 Hs.413099 NM_006529 ENSG00000145451 GLRA3 - glycine receptor alpha 3 protein-coding 275-218 chr2 241015149 241015340 + 2 NA intron (NM_001080437, intron 1 of 31) L1MA9|LINE|L1 16626 NM_001080437 25992 Hs.471834 NM_001080437 ENSG00000162804 SNED1 IRE-BP1|SST3|Snep sushi, nidogen and EGF like domains 1 protein-coding 274-170 chr18 4078679 4078853 + 2 NA intron (NM_001242761, intron 2 of 11) intron (NM_001242761, intron 2 of 11) 116413 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 403-137 chr18 34033381 34033638 + 2 NA intron (NM_001353233, intron 5 of 11) L1MA4A|LINE|L1 15103 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 349-129 chr12 45081995 45082214 + 2 NA Intergenic L2a|LINE|L2 -16693 NR_026583 83956 Hs.650500 NM_032032 RACGAP1P FKSG42 Rac GTPase activating protein 1 pseudogene pseudo 260-368 chr6 37136462 37136671 + 2 NA Intergenic Intergenic -33586 NM_002648 5292 Hs.81170 NM_002648 ENSG00000137193 PIM1 PIM Pim-1 proto-oncogene, serine/threonine kinase protein-coding 149-80 chr5 21116089 21116181 + 2 NA Intergenic MER4-int|LTR|ERV1 -343345 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 263-264 chr3 108435724 108435914 + 2 NA intron (NM_014981, intron 26 of 41) intron (NM_014981, intron 26 of 41) 93503 NM_014981 22989 Hs.731060 NM_014981 ENSG00000144821 MYH15 - myosin heavy chain 15 protein-coding 346-289 chr22 26110472 26110711 + 2 NA Intergenic MIRb|SINE|MIR -58871 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 345-109 chr12 14277683 14277881 + 2 NA Intergenic AluY|SINE|Alu -87850 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 537-116 chr2 99136267 99136633 + 2 NA intron (NM_001349013, intron 1 of 16) L2c|LINE|L2 4730 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 336-433 chr4 148704260 148704490 + 2 NA Intergenic L1MEd|LINE|L1 238003 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 383-323 chr5 99246158 99246436 + 2 NA Intergenic Intergenic -287693 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 845-14 chr2 33867476 33867998 + 2 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -139520 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 768-55 chr8 129758910 129759510 + 2 NA intron (NM_031415, intron 6 of 13) L1MA2|LINE|L1 27414 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 458-246 chr7 145328140 145328446 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -492240 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 346-39 chr1 246976266 246976512 + 2 NA intron (NM_001204221, intron 4 of 5) intron (NM_001204221, intron 4 of 5) 31668 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 617-19 chr11 50377090 50377491 + 2 NA Intergenic ALR/Alpha|Satellite|centr -31857 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 248-420 chr8 141819437 141819597 + 2 NA Intergenic Intergenic -33204 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 303-35 chr10 35707927 35708160 + 2 NA Intergenic Intergenic -66609 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 254-450 chrX 88552602 88552807 + 2 NA Intergenic L1P4b|LINE|L1 -194521 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 418-272 chr8 3086106 3086453 + 2 NA intron (NM_033225, intron 49 of 69) intron (NM_033225, intron 49 of 69) -357828 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 390-213 chr20 45264697 45264987 + 2 NA Intergenic Intergenic -10278 NM_003064 6590 Hs.517070 NM_003064 ENSG00000124107 SLPI ALK1|ALP|BLPI|HUSI|HUSI-I|MPI|WAP4|WFDC4 secretory leukocyte peptidase inhibitor protein-coding 225-392 chr9 82468600 82468787 + 2 NA Intergenic Intergenic 479921 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 321-52 chr10 25810830 25811015 + 2 NA Intergenic Intergenic 122788 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 697-24 chr14 86119309 86119803 + 2 NA intron (NR_110155, intron 2 of 3) L1PREC2|LINE|L1 184878 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 475-64 chr12 59774011 59774293 + 2 NA intron (NR_073055, intron 5 of 6) intron (NR_073055, intron 5 of 6) 84782 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 349-384 chr4 123064905 123065120 + 2 NA intron (NM_001345856, intron 13 of 15) MIR|SINE|MIR 141934 NM_145207 166378 Hs.709648 NM_145207 ENSG00000145375 SPATA5 AFG2|EHLMRS|SPAF spermatogenesis associated 5 protein-coding 442-122 chr2 21163492 21163873 + 2 NA Intergenic Intergenic 39696 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 482-282 chr8 125858417 125858830 + 2 NA Intergenic HAL1ME|LINE|L1 92574 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 245-50 chr10 63372001 63372203 + 2 NA TTS (NR_031566) TTS (NR_031566) 946 NR_031566 100302150 NR_031566 ENSG00000221063 MIR1296 MIRN1296|hsa-mir-1296|mir-1296 microRNA 1296 ncRNA 288-143 chr16 23805232 23805412 + 2 NA Intergenic AluJb|SINE|Alu -30661 NM_002738 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 542-221 chr8 87481021 87481478 + 2 NA Intergenic MamGypLTR1a|LTR|Gypsy 392766 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 227-151 chr19 31520963 31521177 + 2 NA Intergenic L1ME1|LINE|L1 -67119 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 183-77 chr2 80912963 80913132 + 2 NA Intergenic Intergenic 553899 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 496-23 chr1 213891267 213891617 + 2 NA intron (NR_037850, intron 4 of 5) MSTD|LTR|ERVL-MaLR -33307 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 184-178 chr9 29238021 29238163 + 2 NA Intergenic Intergenic -24491 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 599-55 chr2 4429091 4429579 + 2 NA Intergenic Intergenic 226887 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 346-183 chr16 83313903 83314121 + 2 NA intron (NM_001220489, intron 4 of 12) intron (NM_001220489, intron 4 of 12) -194334 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 379-96 chr14 82277365 82277565 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -365167 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 297-405 chr6 77005491 77005709 + 2 NA Intergenic L1MB1|LINE|L1 -411977 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 210-168 chr3 11706028 11706172 + 2 NA intron (NM_014667, intron 1 of 5) intron (NM_014667, intron 1 of 5) 14439 NM_001284390 9686 Hs.740389 NM_014667 ENSG00000144560 VGLL4 VGL-4 vestigial like family member 4 protein-coding 288-243 chr21 30811009 30811217 + 2 NA Intergenic Intergenic 2161 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 155-46 chr16 72707374 72707515 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger -42474 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 263-335 chr5 116276538 116276770 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 20911 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 194-198 chr7 41278861 41279025 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger 177339 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 346-118 chr13 62647782 62647991 + 2 NA Intergenic MLT2B1|LTR|ERVL 148806 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 375-438 chr9 19883935 19884177 + 2 NA Intergenic Intergenic -97037 NM_020344 25769 Hs.283014 NM_020344 ENSG00000155886 SLC24A2 NCKX2 solute carrier family 24 member 2 protein-coding 501-210 chr5 92951935 92952317 + 2 NA Intergenic L1MA4A|LINE|L1 619217 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 545-206 chr6 121106508 121106997 + 2 NA intron (NR_104452, intron 33 of 35) intron (NR_104452, intron 33 of 35) 227728 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 459-185 chr3 43166722 43167082 + 2 NA Intergenic L1M4|LINE|L1 -60823 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 493-159 chr2 112202630 112202884 + 2 NA Intergenic L1M4|LINE|L1 52285 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 377-262 chr3 7821275 7821538 + 2 NA Intergenic Intergenic 194901 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 314-73 chr10 82333541 82333742 + 2 NA intron (NM_001370082, intron 3 of 10) intron (NM_001370082, intron 3 of 10) -100721 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 597-21 chr10 65813135 65813485 + 2 NA Intergenic Intergenic 241885 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 351-348 chr4 67360359 67360549 + 2 NA Intergenic L1M4b|LINE|L1 61546 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 310-267 chr2 156810307 156810593 + 2 NA Intergenic L2b|LINE|L2 374071 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 280-146 chr16 12167838 12167993 + 2 NA intron (NM_032167, intron 13 of 20) MER58A|DNA|hAT-Charlie 191181 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 218-349 chr9 81197523 81197649 + 2 NA Intergenic Intergenic 491949 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 330-540 chr8 138198372 138198596 + 2 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -114939 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 338-583 chr9 29528195 29528456 + 2 NA Intergenic L1M4|LINE|L1 -314724 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 216-314 chr6 135079328 135079459 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -24571 NM_001145158 10767 Hs.378532 NM_006620 ENSG00000112339 HBS1L EF-1a|ERFS|HBS1|HSPC276|eRF3c HBS1 like translational GTPase protein-coding 146-9 chr10 11536192 11536286 + 2 NA intron (NM_014688, intron 2 of 14) intron (NM_014688, intron 2 of 14) -3959 NM_001080491 9712 Hs.498661 NM_014688 ENSG00000148429 USP6NL RNTRE|TRE2NL|USP6NL-IT1 USP6 N-terminal like protein-coding 196-217 chr5 155804780 155804882 + 2 NA Intergenic L2c|LINE|L2 -521926 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 332-128 chr12 66173325 66173523 + 2 NA Intergenic AluSq2|SINE|Alu -3352 NM_001282609 51643 Hs.505934 NM_016056 ENSG00000155957 TMBIM4 CGI-119|GAAP|LFG4|S1R|ZPRO transmembrane BAX inhibitor motif containing 4 protein-coding 395-18 chr1 190360042 190360379 + 2 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 115800 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 408-40 chr10 41721259 41721648 + 2 NA Intergenic ALR/Alpha|Satellite|centr 646592 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 263-443 chr9 25573785 25573969 + 2 NA Intergenic Intergenic 104981 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 348-124 chr13 89400140 89400382 + 2 NA Intergenic Intergenic 100248 NR_131228 105370308 Hs.599406 NR_131228 ENSG00000226037 LINC01040 TCONS_00021682 long intergenic non-protein coding RNA 1040 ncRNA 588-39 chr14 69547907 69548318 + 2 NA Intergenic CpG 26759 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 616-76 chr2 48777725 48778101 + 2 NA Intergenic Intergenic -22189 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 407-101 chr16 53751546 53751783 + 2 NA intron (NM_001363897, intron 1 of 7) L1MB7|LINE|L1 47508 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 409-106 chr16 82406779 82407026 + 2 NA Intergenic L3|LINE|CR1 -220067 NM_001220491 1012 Hs.654386 NM_001257 ENSG00000140945 CDH13 CDHH|P105 cadherin 13 protein-coding 283-399 chr6 122512779 122513022 + 2 NA intron (NM_001270393, intron 3 of 7) L2|LINE|L2 40983 NM_181794 5570 Hs.741340 NM_032471 ENSG00000135549 PKIB PRKACN2 cAMP-dependent protein kinase inhibitor beta protein-coding 379-389 chrX 10887031 10887356 + 2 NA Intergenic Intergenic -53510 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 306-58 chr10 76227283 76227579 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 444670 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 903-33 chr6 164814408 164815077 + 2 NA intron (NR_131926, intron 1 of 3) THE1D-int|LTR|ERVL-MaLR 7321 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 249-160 chr18 4153061 4153272 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -111436 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 274-285 chr4 66172894 66173064 + 2 NA Intergenic L1MA6|LINE|L1 -103845 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 353-200 chr18 409968 410161 + 2 NA intron (NM_130386, intron 2 of 9) MIRb|SINE|MIR 90637 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 409-224 chr4 103104943 103105281 + 2 NA TTS (NM_001286734) TTS (NM_001286734) -5278 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 580-62 chr16 64068527 64068991 + 2 NA Intergenic Intergenic 1053304 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 150-104 chr8 20796541 20796676 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -157025 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 561-202 chr8 101620631 101621185 + 2 NA intron (NM_024915, intron 9 of 15) L1M8|LINE|L1 128469 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 559-203 chr9 100753001 100753393 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 175118 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 293-222 chr2 216899333 216899562 + 2 NA Intergenic L1MCa|LINE|L1 28675 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 259-201 chr2 83321330 83321487 + 2 NA Intergenic Intergenic -201406 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 468-24 chr10 28870792 28871214 + 2 NA intron (NM_001278522, intron 3 of 4) AluSx1|SINE|Alu 24595 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 549-166 chr5 61116875 61117317 + 2 NA intron (NM_174889, intron 3 of 3) HAL1|LINE|L1 -45220 NR_109908 101928630 Hs.575209 NR_109908 SMIM15-AS1 CTC-436P18.1 SMIM15 antisense RNA 1 ncRNA 510-273 chr8 49311752 49312148 + 2 NA Intergenic L1M4|LINE|L1 200230 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 325-374 chr4 156935 157100 + 2 NA intron (NR_110527, intron 3 of 4) L1MB2|LINE|L1 28896 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 430-149 chr2 118252149 118252368 + 2 NA Intergenic Intergenic -65872 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 237-228 chr3 7149198 7149430 + 2 NA intron (NM_000844, intron 2 of 9) MamRep137|DNA|TcMar-Tigger -255297 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 237-19 chr1 165795276 165795422 + 2 NA Intergenic L1ME4b|LINE|L1 26420 NR_125374 100147773 Hs.633824 NR_125374 TMCO1-AS1 - TMCO1 antisense RNA 1 ncRNA 338-557 chr8 115712554 115712847 + 2 NA Intergenic Intergenic -43725 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 226-378 chr9 32848474 32848628 + 2 NA Intergenic L2a|LINE|L2 65011 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 492-225 chr5 175332883 175333295 + 2 NA Intergenic Intergenic 111093 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 425-146 chr2 136502474 136502865 + 2 NA Intergenic MLT2B4|LTR|ERVL -262876 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 174-144 chr8 85335998 85336128 + 2 NA intron (NM_001291968, intron 2 of 5) L1MC4a|LINE|L1 5651 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 324-130 chr12 131539067 131539315 + 2 NA Intergenic Intergenic 108930 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 358-378 chr5 98464772 98465099 + 2 NA Intergenic Intergenic -303696 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 353-504 chr7 159015789 159016060 + 2 NA intron (NR_024394, intron 1 of 4) intron (NR_024394, intron 1 of 4) 7570 NR_024394 154822 Hs.544783 NM_198345 ENSG00000231419 LINC00689 - long intergenic non-protein coding RNA 689 ncRNA 289-161 chr15 99989990 99990160 + 2 NA intron (NM_139057, intron 20 of 21) AluJb|SINE|Alu 183052 NR_135737 400464 Hs.187134 NM_001013670 ENSG00000259363 LOC400464 - ubiquitin conjugating enzyme E2 Q2 pseudogene pseudo 340-85 chr11 94611930 94612102 + 2 NA intron (NM_152431, intron 15 of 19) L1MA9|LINE|L1 44648 NM_152431 143689 Hs.660188 NM_152431 ENSG00000134627 PIWIL4 HIWI2|MIWI2 piwi like RNA-mediated gene silencing 4 protein-coding 201-84 chr14 87241045 87241203 + 2 NA Intergenic MIRb|SINE|MIR 335346 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 211-185 chr3 50593496 50593662 + 2 NA 3' UTR (NM_016173, exon 11 of 11) 3' UTR (NM_016173, exon 11 of 11) 18195 NM_145071 1154 Hs.655334 NM_013324 ENSG00000114737 CISH BACTS2|CIS|CIS-1|G18|SOCS cytokine inducible SH2 containing protein protein-coding 532-140 chr2 213268389 213268891 + 2 NA Intergenic Intergenic 15569 NR_144752 100130451 Hs.608433 NR_144752 SPAG16-DT - SPAG16 divergent transcript ncRNA 329-364 chr3 68169966 68170229 + 2 NA intron (NM_001252216, intron 2 of 4) L1MB7|LINE|L1 165850 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 523-135 chr2 107517923 107518391 + 2 NA Intergenic L1ME1|LINE|L1 -11262 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 167-48 chr18 25741495 25741635 + 2 NA Intergenic MIRb|SINE|MIR 349048 NM_001007559 6760 Hs.129261 NM_005637 ENSG00000141380 SS18 SSXT|SYT SS18 subunit of BAF chromatin remodeling complex protein-coding 520-243 chr5 117796095 117796492 + 2 NA intron (NR_104997, intron 1 of 2) L2|LINE|L2 65932 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 592-5 chr1 150686837 150687266 + 2 NA intron (NM_018178, intron 2 of 4) intron (NM_018178, intron 2 of 4) 10103 NM_018178 55204 Hs.203699 NM_018178 ENSG00000143457 GOLPH3L GPP34R golgi phosphoprotein 3 like protein-coding 296-50 chr10 65032321 65032515 + 2 NA Intergenic L1M4|LINE|L1 -107900 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 517-109 chr18 45706783 45707239 + 2 NA Intergenic Intergenic -17170 NM_001128588 6563 Hs.101307 NM_015865 ENSG00000141469 SLC14A1 HUT11|HsT1341|JK|RACH1|RACH2|UT-B1|UT1|UTE solute carrier family 14 member 1 (Kidd blood group) protein-coding 452-140 chr2 150353822 150354112 + 2 NA Intergenic Intergenic -96960 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 465-123 chr2 6046198 6046561 + 2 NA Intergenic L1PREC2|LINE|L1 64401 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 209-298 chr7 52157338 52157527 + 2 NA Intergenic Intergenic -764176 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 543-194 chr5 8003702 8004170 + 2 NA Intergenic L1M1|LINE|L1 134788 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 343-160 chr15 60703334 60703636 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 21916 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 193-135 chr21 15036951 15037079 + 2 NA intron (NM_003489, intron 2 of 3) intron (NM_003489, intron 2 of 3) 27985 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 402-270 chr5 56442436 56442711 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 39196 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 603-45 chr14 42738171 42738632 + 2 NA Intergenic Intergenic 1131545 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 403-127 chr17 26817884 26818160 + 2 NA Intergenic Intergenic 271219 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 392-144 chr2 47209592 47209799 + 2 NA intron (NR_110208, intron 3 of 4) MIRb|SINE|MIR -32759 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 587-61 chr17 68913731 68914169 + 2 NA intron (NM_001288985, intron 17 of 39) L1MA3|LINE|L1 41442 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 464-82 chr16 6509908 6510164 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -263773 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 558-134 chr3 70352918 70353341 + 2 NA Intergenic L1MD1|LINE|L1 -40491 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 775-43 chr2 79640636 79641328 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 8377 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 355-319 chr3 46031197 46031445 + 2 NA Intergenic MER52D|LTR|ERV1 -3838 NM_005283 2829 Hs.128375 NM_005283 ENSG00000173578 XCR1 CCXCR1|GPR5 X-C motif chemokine receptor 1 protein-coding 272-301 chr4 48966583 48966740 + 2 NA Intergenic Intergenic -19614 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 801-13 chr15 86075459 86076033 + 2 NA Intergenic AluSx|SINE|Alu -3874 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 456-38 chr10 77934393 77934758 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 7763 NR_024585 100128292 Hs.547908 NR_024585 DLG5-AS1 - DLG5 antisense RNA 1 ncRNA 273-124 chr14 20275288 20275470 + 2 NA Intergenic L1PB3|LINE|L1 30572 NM_138376 91875 Hs.98553 NM_138376 ENSG00000136319 TTC5 Strap tetratricopeptide repeat domain 5 protein-coding 254-247 chr3 97113746 97113934 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 299246 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 517-10 chr1 110279807 110280170 + 2 NA Intergenic AluSx3|SINE|Alu 59183 NR_036595 440600 Hs.649375 NR_036595 ENSG00000227963 RBM15-AS1 AS-RBM15 RBM15 antisense RNA 1 ncRNA 217-249 chr4 17281552 17281698 + 2 NA Intergenic L3|LINE|CR1 39257 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 243-363 chr5 83377785 83377947 + 2 NA Intergenic Intergenic -93808 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 503-277 chr8 86601052 86601551 + 2 NA intron (NM_019098, intron 15 of 17) intron (NM_019098, intron 15 of 17) 86866 NM_003909 8895 Hs.191219 NM_003909 ENSG00000085719 CPNE3 CPN3|PRO1071 copine 3 protein-coding 294-349 chr4 141936400 141936571 + 2 NA Intergenic MIRc|SINE|MIR 299902 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 342-75 chr10 83072544 83072744 + 2 NA Intergenic L1M4|LINE|L1 604445 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 654-22 chr11 3992876 3993439 + 2 NA intron (NM_001277962, intron 2 of 12) L2a|LINE|L2 -101528 NM_001318064 6240 Hs.445705 NM_001033 ENSG00000167325 RRM1 R1|RIR1|RR1 ribonucleotide reductase catalytic subunit M1 protein-coding 191-227 chrX 53912700 53912803 + 2 NA Intergenic L1MD2|LINE|L1 130396 NM_001184898 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 342-273 chr2 238994744 238994960 + 2 NA Intergenic L1MC4|LINE|L1 -68583 NR_034162 401039 Hs.516791 NM_001001698 ENSG00000227744 LINC01940 - long intergenic non-protein coding RNA 1940 ncRNA 341-430 chr5 31625967 31626187 + 2 NA Intergenic Intergenic -13054 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 467-116 chr18 38555182 38555646 + 2 NA Intergenic L2c|LINE|L2 898279 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 248-51 chr10 98305135 98305310 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -37028 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 185-56 chr14 26948297 26948427 + 2 NA Intergenic Intergenic 39720 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 368-63 chr10 91313805 91314098 + 2 NA intron (NR_024467, intron 4 of 4) intron (NR_024467, intron 4 of 4) 93288 NM_032373 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 390-398 chr8 131207993 131208206 + 2 NA Intergenic L2|LINE|L2 -167190 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 825-51 chr8 46367252 46367928 + 2 NA Intergenic ALR/Alpha|Satellite|centr 250053 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 240-148 chr15 38434650 38434807 + 2 NA Intergenic L1PB4|LINE|L1 -19399 NM_173611 283742 Hs.6799 NM_173611 ENSG00000171262 FAM98B - family with sequence similarity 98 member B protein-coding 381-256 chr3 108355231 108355605 + 2 NA intron (NM_001370244, intron 5 of 9) intron (NM_001370244, intron 5 of 9) 43633 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 286-250 chr20 40629173 40629444 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 59928 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 381-42 chr10 30917987 30918327 + 2 NA intron (NM_182755, intron 3 of 7) L1ME2z|LINE|L1 81360 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 297-163 chr16 73164151 73164406 + 2 NA Intergenic Intergenic -19831 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 553-29 chr11 38861053 38861432 + 2 NA Intergenic L1M1|LINE|L1 212384 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 309-254 chr2 88219992 88220223 + 2 NA Intergenic Intergenic 46968 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 508-50 chr12 104368619 104369072 + 2 NA Intergenic Intergenic 65106 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 277-56 chr10 64995849 64996052 + 2 NA Intergenic L1ME3E|LINE|L1 -71432 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 216-134 chr17 62734970 62735175 + 2 NA intron (NM_001288780, intron 7 of 10) intron (NM_001288780, intron 7 of 10) 28866 NR_147886 105371855 Hs.446268 NR_147886 ENSG00000265702 LOC105371855 - uncharacterized LOC105371855 ncRNA 408-112 chr15 39547267 39547500 + 2 NA Intergenic L1MA9|LINE|L1 -33696 NM_003246 7057 Hs.164226 NM_003246 ENSG00000137801 THBS1 THBS|THBS-1|TSP|TSP-1|TSP1 thrombospondin 1 protein-coding 438-5 chr1 44453384 44453741 + 2 NA intron (NM_001319957, intron 1 of 13) L1ME3G|LINE|L1 29561 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 379-339 chr8 67916208 67916501 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -35692 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 545-36 chr11 21639446 21639827 + 2 NA Intergenic L1MB8|LINE|L1 -553449 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 322-318 chr3 8197606 8197780 + 2 NA Intergenic L1MA3|LINE|L1 -181386 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 324-438 chr5 148755742 148755933 + 2 NA Intergenic L1MA10|LINE|L1 -70756 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 331-39 chr1 236621306 236621596 + 2 NA Intergenic Intergenic -16935 NM_018072 55127 Hs.708114 NM_018072 ENSG00000119285 HEATR1 BAP28|UTP10 HEAT repeat containing 1 protein-coding 534-123 chr2 117217826 117218226 + 2 NA Intergenic Intergenic -596665 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 586-55 chr15 62153655 62154091 + 2 NA Intergenic Intergenic 11412 NM_001007595 388125 Hs.144372 NM_001007595 ENSG00000205502 C2CD4B FAM148B|NLF2 C2 calcium dependent domain containing 4B protein-coding 343-361 chr3 142265848 142266155 + 2 NA Intergenic LTR40a|LTR|ERVL -40416 NR_033289 256356 Hs.135904 NM_152776 ENSG00000175066 GK5 - glycerol kinase 5 protein-coding 329-162 chr14 60897691 60898001 + 2 NA intron (NM_001177963, intron 6 of 6) L1MA4A|LINE|L1 83233 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 350-167 chr16 63201187 63201508 + 2 NA Intergenic Intergenic -1164909 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 317-395 chr5 117988184 117988463 + 2 NA intron (NR_104997, intron 2 of 2) intron (NR_104997, intron 2 of 2) 257962 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 510-178 chr22 36736960 36737364 + 2 NA intron (NR_134623, intron 2 of 3) intron (NR_134623, intron 2 of 3) 33286 NR_134623 105373021 Hs.401697 NR_134623 LOC105373021 - uncharacterized LOC105373021 ncRNA 275-142 chr17 41450764 41450927 + 2 NA Intergenic Intergenic -9501 NM_006771 8687 Hs.248188 NM_006771 ENSG00000171360 KRT38 HA8|KRTHA8|hHa8 keratin 38 protein-coding 386-15 chr1 188141453 188141812 + 2 NA Intergenic Intergenic 698004 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 366-13 chr1 94115739 94115960 + 2 NA intron (NM_000350, intron 1 of 49) intron (NM_000350, intron 1 of 49) 5299 NM_000350 24 Hs.416707 NM_000350 ENSG00000198691 ABCA4 ABC10|ABCR|ARMD2|CORD3|FFM|RMP|RP19|STGD|STGD1 ATP binding cassette subfamily A member 4 protein-coding 165-86 chr3 191895136 191895256 + 2 NA Intergenic Intergenic -343434 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 136-76 chr6 71998065 71998157 + 2 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) 111408 NM_001350412 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 676-120 chr9 74238557 74239002 + 2 NA Intergenic L1MB4|LINE|L1 -132752 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 322-294 chr20 43787957 43788249 + 2 NA Intergenic L1MB3|LINE|L1 -61101 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 196-65 chr13 74810956 74811124 + 2 NA Intergenic Intergenic 258197 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 372-473 chr8 42238521 42238887 + 2 NA Intergenic LTR8B|LTR|ERV1 -31139 NM_000930 5327 Hs.491582 NM_000930 ENSG00000104368 PLAT T-PA|TPA plasminogen activator, tissue type protein-coding 336-371 chr3 90103078 90103371 + 2 NA Intergenic L1MC4|LINE|L1 995603 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 484-30 chr10 44536658 44537130 + 2 NA Intergenic Intergenic -151797 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 285-333 chr5 32648217 32648430 + 2 NA Intergenic L1ME4a|LINE|L1 -42549 NM_001364458 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 491-47 chr12 17967253 17967568 + 2 NA Intergenic L1PA10|LINE|L1 122783 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 193-160 chr4 182003375 182003531 + 2 NA Intergenic Intergenic 141062 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 269-246 chr3 26910968 26911178 + 2 NA Intergenic Intergenic 216516 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 311-472 chr7 48779985 48780168 + 2 NA Intergenic MER4D1|LTR|ERV1 -144471 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 293-184 chr2 56923809 56924066 + 2 NA Intergenic Intergenic -738167 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 291-29 chr1 185812845 185813095 + 2 NA intron (NM_031935, intron 1 of 106) intron (NM_031935, intron 1 of 106) 78579 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 276-87 chr11 81991551 81991793 + 2 NA intron (NR_120571, intron 6 of 7) L1MC4|LINE|L1 -100836 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 240-279 chr3 8159978 8160133 + 2 NA Intergenic MER21A|LTR|ERVL -143748 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 363-38 chr10 12892703 12892895 + 2 NA Intergenic Intergenic 108914 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 374-134 chr16 81742635 81742857 + 2 NA Intergenic L2c|LINE|L2 -36545 NM_002661 5336 Hs.372303 NM_002661 ENSG00000197943 PLCG2 APLAID|FCAS3|PLC-IV|PLC-gamma-2 phospholipase C gamma 2 protein-coding 447-90 chr16 47940955 47941299 + 2 NA Intergenic MIRb|SINE|MIR -24562 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 333-76 chr11 7159562 7159892 + 2 NA Intergenic L2c|LINE|L2 70729 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 132-94 chr9 2595782 2595892 + 2 NA intron (NR_015375, intron 1 of 3) intron (NR_015375, intron 1 of 3) -25950 NM_001018056 7436 Hs.370422 NM_003383 ENSG00000147852 VLDLR CAMRQ1|CARMQ1|CHRMQ1|VLDL-R|VLDLRCH very low density lipoprotein receptor protein-coding 292-42 chr10 49672013 49672186 + 2 NA Intergenic L1PB3|LINE|L1 -7552 NM_001042427 282966 Hs.131287 NM_182554 ENSG00000178645 C10orf53 - chromosome 10 open reading frame 53 protein-coding 228-331 chr8 24038333 24038485 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger -183603 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 296-375 chr5 87853173 87853378 + 2 NA Intergenic Intergenic 191233 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 650-63 chr20 8872150 8872683 + 2 NA intron (NM_182734, intron 32 of 32) intron (NM_182734, intron 32 of 32) 41231 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 482-71 chr13 62195073 62195398 + 2 NA Intergenic Intergenic -17047 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 306-176 chr16 5670674 5670851 + 2 NA Intergenic Intergenic 38295 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 486-210 chr3 131648401 131648726 + 2 NA intron (NM_130808, intron 7 of 15) intron (NM_130808, intron 7 of 15) -145592 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 175-42 chr12 43361794 43361919 + 2 NA intron (NM_025003, intron 37 of 38) intron (NM_025003, intron 37 of 38) 190347 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 391-72 chr12 20085792 20086066 + 2 NA intron (NR_040098, intron 2 of 2) L1MEg|LINE|L1 41972 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 418-87 chr16 25867947 25868323 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -157102 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 439-266 chr7 47071346 47071698 + 2 NA Intergenic Intergenic -374400 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 243-311 chr4 18942760 18942986 + 2 NA Intergenic AluJb|SINE|Alu -920998 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 326-566 chr9 8573876 8574161 + 2 NA intron (NM_130392, intron 3 of 30) intron (NM_130392, intron 3 of 30) 159928 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 367-17 chr1 85821732 85822058 + 2 NA intron (NM_152890, intron 45 of 59) intron (NM_152890, intron 45 of 59) -113462 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 398-157 chr2 44896067 44896351 + 2 NA Intergenic Intergenic 42679 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 531-150 chr3 29238952 29239337 + 2 NA Intergenic Intergenic 41795 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 175-97 chr21 25234683 25234825 + 2 NA Intergenic L1MEc|LINE|L1 196947 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 327-328 chr3 44528857 44529127 + 2 NA Intergenic Intergenic -18375 NM_001287349 285346 Hs.648974 NM_001287349 ENSG00000178917 ZNF852 - zinc finger protein 852 protein-coding 204-69 chr12 128774706 128774828 + 2 NA Intergenic Intergenic 49191 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 651-35 chr14 33002382 33002880 + 2 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 63752 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 284-379 chr7 45459507 45459744 + 2 NA Intergenic Intergenic -114515 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 310-271 chr2 174784617 174784871 + 2 NA Intergenic Intergenic -20272 NM_001039523 1134 Hs.434479 NM_000079 ENSG00000138435 CHRNA1 ACHRA|ACHRD|CHRNA|CMS1A|CMS1B|CMS2A|FCCMS|SCCMS cholinergic receptor nicotinic alpha 1 subunit protein-coding 317-412 chr6 62751029 62751257 + 2 NA Intergenic AluJb|SINE|Alu -464916 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 559-77 chr18 33225069 33225503 + 2 NA intron (NM_001308126, intron 16 of 23) AluSz6|SINE|Alu 215285 NM_001371121 575-69 chr17 54646642 54647050 + 2 NA Intergenic L1MA2|LINE|L1 -253845 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 534-267 chr8 130926670 130927146 + 2 NA intron (NM_001115, intron 5 of 17) L1MA8|LINE|L1 114001 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 400-71 chr12 86613050 86613256 + 2 NA intron (NM_001351285, intron 2 of 8) intron (NM_001351285, intron 2 of 8) 131996 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 316-535 chr8 30478153 30478464 + 2 NA intron (NM_001008710, intron 3 of 8) intron (NM_001008710, intron 3 of 8) -92907 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 420-163 chr2 240475050 240475330 + 2 NA Intergenic L1PREC2|LINE|L1 -18490 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 351-201 chr19 52612334 52612628 + 2 NA 3' UTR (NM_001277945, exon 6 of 6) 3' UTR (NM_001277945, exon 6 of 6) 15797 NR_023311 7696 Hs.373648 NM_003438 ZNF137P ZNF137|pHZ-30 zinc finger protein 137, pseudogene pseudo 194-208 chr8 87475247 87475431 + 2 NA Intergenic Intergenic 398676 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 256-279 chr3 191153840 191154022 + 2 NA Intergenic L1M3c|LINE|L1 -45310 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 471-220 chr5 163870031 163870471 + 2 NA Intergenic Intergenic 364632 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 317-308 chr3 87296734 87296947 + 2 NA Intergenic Intergenic -20256 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 370-100 chr11 111210529 111210864 + 2 NA Intergenic LTR78|LTR|ERV1 -35029 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 112-13 chr13 97677509 97677612 + 2 NA Intergenic Intergenic 243391 NM_021033 5911 Hs.508480 NM_021033 ENSG00000125249 RAP2A K-REV|KREV|RAP2|RbBP-30 RAP2A, member of RAS oncogene family protein-coding 312-407 chr5 25269686 25269943 + 2 NA intron (NR_136209, intron 1 of 3) L1PA13|LINE|L1 78861 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 402-5 chr1 33859785 33860035 + 2 NA promoter-TSS (NM_145205) promoter-TSS (NM_145205) -565 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 193-156 chr4 85693797 85693948 + 2 NA intron (NM_001025616, intron 2 of 9) L1PA16|LINE|L1 -28596 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 437-143 chr2 138683955 138684348 + 2 NA intron (NM_007226, intron 1 of 1) MIRc|SINE|MIR 96239 NM_007226 11249 Hs.435019 NM_007226 ENSG00000144227 NXPH2 NPH2 neurexophilin 2 protein-coding 342-89 chr11 24103082 24103387 + 2 NA Intergenic L1PB4|LINE|L1 -393819 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 144-24 chr14 27287072 27287156 + 2 NA Intergenic MER57A-int|LTR|ERV1 -325474 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 447-164 chr3 37564105 37564470 + 2 NA intron (NM_002207, intron 15 of 27) intron (NM_002207, intron 15 of 27) 112146 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 234-23 chr1 196039368 196039595 + 2 NA Intergenic L1MA5|LINE|L1 49234 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 370-393 chr6 61316356 61316681 + 2 NA Intergenic ALR/Alpha|Satellite|centr -257612 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 432-102 chr17 56172577 56172983 + 2 NA intron (NM_153228, intron 1 of 16) intron (NM_153228, intron 1 of 16) 19305 NM_001365758 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 532-47 chr12 59082058 59082417 + 2 NA Intergenic MIRb|SINE|MIR -161699 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 226-297 chr6 23276162 23276312 + 2 NA Intergenic Intergenic -558313 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 320-471 chr5 168648854 168649121 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -57940 NR_130737 101927969 Hs.661903 NR_130737 LOC101927969 - uncharacterized LOC101927969 ncRNA 344-180 chr16 81585586 81585894 + 2 NA intron (NM_030629, intron 1 of 20) intron (NM_030629, intron 1 of 20) -25608 NR_106759 102465251 NR_106759 ENSG00000275109 MIR6504 hsa-mir-6504 microRNA 6504 ncRNA 173-55 chr18 5488583 5488670 + 2 NA intron (NM_001281535, intron 4 of 21) intron (NM_001281535, intron 4 of 21) 51930 NM_001281533 23136 Hs.213394 NM_012307 ENSG00000082397 EPB41L3 4.1B|DAL-1|DAL1 erythrocyte membrane protein band 4.1 like 3 protein-coding 199-95 chr2 3993847 3994029 + 2 NA Intergenic Intergenic 19777 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 148-43 chr2 88265833 88265946 + 2 NA Intergenic Intergenic 92750 NM_018271 55258 Hs.739080 NM_018271 ENSG00000144115 THNSL2 SOFAT|THS2|TSH2 threonine synthase like 2 protein-coding 278-423 chr8 118157556 118157770 + 2 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -45844 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 726-55 chr4 33268018 33268540 + 2 NA Intergenic L1MC2|LINE|L1 771614 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 316-151 chr13 27157519 27157716 + 2 NA intron (NR_046547, intron 1 of 2) intron (NR_046547, intron 1 of 2) 14194 NM_182488 219333 Hs.42400 NM_182488 ENSG00000152484 USP12 UBH1|USP12L1 ubiquitin specific peptidase 12 protein-coding 354-483 chr8 135181541 135181747 + 2 NA Intergenic Intergenic -52487 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 196-89 chr16 25174415 25174575 + 2 NA intron (NM_001032391, intron 7 of 8) L1ME4b|LINE|L1 -25463 NR_039998 100506655 Hs.657576 NR_039998 ENSG00000260034 LCMT1-AS2 - LCMT1 antisense RNA 2 ncRNA 499-68 chr14 67769146 67769524 + 2 NA intron (NM_015346, intron 29 of 41) intron (NM_015346, intron 29 of 41) 47255 NM_015346 23503 Hs.98041 NM_015346 ENSG00000072121 ZFYVE26 FYVE-CENT|SPG15 zinc finger FYVE-type containing 26 protein-coding 398-192 chr21 23123047 23123422 + 2 NA Intergenic L1M5|LINE|L1 43950 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 249-436 chr8 135310128 135310288 + 2 NA Intergenic Intergenic 76077 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 236-17 chr1 157787539 157787695 + 2 NA Intergenic L1MA7|LINE|L1 -10485 NR_125358 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 190-26 chr11 48156390 48156510 + 2 NA intron (NM_002843, intron 21 of 24) MIR3|SINE|MIR 59668 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 334-14 chr1 73596009 73596330 + 2 NA Intergenic Intergenic -78510 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 355-83 chr11 27350068 27350406 + 2 NA 3' UTR (NM_080654, exon 3 of 3) 3' UTR (NM_080654, exon 3 of 3) 12978 NM_030771 91057 Hs.143733 NM_030771 ENSG00000109881 CCDC34 L15|NY-REN-41|RAMA3 coiled-coil domain containing 34 protein-coding 503-248 chr6 114807367 114807737 + 2 NA Intergenic Intergenic -744675 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 458-102 chr17 68824578 68824908 + 2 NA Intergenic L2a|LINE|L2 130649 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 463-297 chr8 134997888 134998136 + 2 NA Intergenic Intergenic 148077 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 175-109 chr4 26880887 26881031 + 2 NA intron (NM_001169118, intron 1 of 12) intron (NM_001169118, intron 1 of 12) 20118 NM_001169118 57620 Hs.744950 NM_020860 ENSG00000109689 STIM2 - stromal interaction molecule 2 protein-coding 350-549 chr8 141862263 141862536 + 2 NA Intergenic Intergenic -76086 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 328-333 chr22 25822024 25822219 + 2 NA intron (NM_001318245, intron 12 of 43) L2a|LINE|L2 79933 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 382-286 chr4 18272747 18272991 + 2 NA Intergenic Intergenic -250994 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 324-341 chr3 31524807 31525026 + 2 NA Intergenic Intergenic -8009 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 376-420 chr9 7309712 7309928 + 2 NA Intergenic L1M2|LINE|L1 489958 NM_033428 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 424-130 chr2 57168935 57169354 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -738507 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 514-171 chr20 47069189 47069542 + 2 NA intron (NM_172110, intron 5 of 13) AluSx1|SINE|Alu -97602 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 484-39 chr11 82353814 82354162 + 2 NA intron (NR_120571, intron 2 of 7) intron (NR_120571, intron 2 of 7) 49925 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 266-72 chr11 104785222 104785417 + 2 NA Intergenic Intergenic 113351 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 338-569 chr8 137919734 137920046 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 163655 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 187-37 chr12 24686173 24686323 + 2 NA Intergenic Intergenic -102080 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 212-169 chr2 124277010 124277153 + 2 NA intron (NM_130773, intron 3 of 23) intron (NM_130773, intron 3 of 23) 251794 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 244-202 chr20 47721703 47721885 + 2 NA intron (NM_198596, intron 3 of 20) MLT1K|LTR|ERVL-MaLR 64270 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 283-376 chr5 120022225 120022415 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 392761 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 391-263 chr4 97385347 97385636 + 2 NA intron (NR_102713, intron 1 of 5) L2a|LINE|L2 18565 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 683-94 chr8 139058186 139058579 + 2 NA Intergenic L1MCc|LINE|L1 -144341 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 549-87 chr18 37202234 37202687 + 2 NA intron (NR_136303, intron 10 of 13) LTR49-int|LTR|ERV1 -72000 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 666-58 chr2 123286469 123286904 + 2 NA Intergenic L1M4b|LINE|L1 -213205 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 729-25 chr14 62186087 62186454 + 2 NA Intergenic Intergenic -46297 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 350-417 chr5 140279139 140279370 + 2 NA intron (NM_002622, intron 3 of 3) intron (NM_002622, intron 3 of 3) 23847 NM_002622 5201 Hs.483564 NM_002622 ENSG00000113068 PFDN1 PDF|PFD1 prefoldin subunit 1 protein-coding 193-216 chr9 71087664 71087831 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 33874 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 170-12 chr1 210868893 210868997 + 2 NA intron (NM_002238, intron 7 of 10) L1ME1|LINE|L1 264429 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 235-126 chr16 63107385 63107545 + 2 NA Intergenic L2c|LINE|L2 -1071027 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 452-235 chr6 93117610 93117993 + 2 NA Intergenic Intergenic 301758 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 439-258 chr7 8111578 8111953 + 2 NA Intergenic Intergenic 142969 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 563-154 chr5 107955050 107955459 + 2 NA intron (NM_001163315, intron 7 of 8) intron (NM_001163315, intron 7 of 8) -284317 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 240-136 chr14 56780786 56780971 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie 24789 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 367-314 chr4 14062893 14063210 + 2 NA Intergenic Intergenic -48917 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 453-271 chr8 9652846 9653129 + 2 NA intron (NM_003747, intron 3 of 26) intron (NM_003747, intron 3 of 26) -88685 NR_030327 693182 NR_030327 ENSG00000207701 MIR597 MIRN597|hsa-mir-597|mir-597 microRNA 597 ncRNA 375-189 chr19 12533258 12533468 + 2 NA intron (NM_144976, intron 1 of 3) L1MC2|LINE|L1 18119 NM_144976 163050 Hs.655615 NM_144976 ENSG00000249709 ZNF564 - zinc finger protein 564 protein-coding 637-52 chr18 55923257 55923672 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -3265 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 343-390 chr4 62858477 62858750 + 2 NA Intergenic L1MB2|LINE|L1 -696848 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 475-183 chr3 80927721 80928071 + 2 NA Intergenic Intergenic -65972 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 448-285 chr8 83987276 83987613 + 2 NA Intergenic L1MA1|LINE|L1 -195343 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 583-156 chr7 111723280 111723704 + 2 NA Intergenic HAL1|LINE|L1 -85013 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 391-249 chr4 15048404 15048709 + 2 NA intron (NM_001177383, intron 5 of 10) L1ME3|LINE|L1 46075 NM_182485 132864 Hs.656937 NM_182485 ENSG00000137449 CPEB2 CPE-BP2|CPEB-2|hCPEB-2 cytoplasmic polyadenylation element binding protein 2 protein-coding 1116-8 chr20 55775524 55776385 + 2 NA Intergenic Intergenic 229565 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 147-85 chr8 98644292 98644421 + 2 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 181315 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 280-329 chr5 105481673 105481909 + 2 NA Intergenic L1MA9|LINE|L1 382317 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 307-4 chr1 33775199 33775435 + 2 NA intron (NM_052896, intron 12 of 69) MER96B|DNA|hAT-Tip100 -85158 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 553-32 chr11 60321295 60321663 + 2 NA Intergenic L1PA10|LINE|L1 -13403 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 331-366 chr3 148403127 148403365 + 2 NA Intergenic Intergenic 122355 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 198-149 chr21 34250180 34250327 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 69576 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 366-400 chr7 7856450 7856652 + 2 NA intron (NM_001302350, intron 4 of 4) THE1D|LTR|ERVL-MaLR 112201 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 551-98 chr2 177019018 177019394 + 2 NA Intergenic Intergenic 193205 NR_157853 105373759 NR_157853 LOC105373759 - uncharacterized LOC105373759 ncRNA 226-251 chr4 39864186 39864356 + 2 NA intron (NM_001100399, intron 23 of 32) intron (NM_001100399, intron 23 of 32) 113640 NM_001100399 23244 Hs.331431 NM_015200 ENSG00000121892 PDS5A PIG54|SCC-112|SCC112 PDS5 cohesin associated factor A protein-coding 239-37 chr10 67631185 67631360 + 2 NA intron (NM_001127384, intron 2 of 17) intron (NM_001127384, intron 2 of 17) 34388 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 411-120 chr17 74058274 74058666 + 2 NA Intergenic Intergenic -145208 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 317-361 chr4 96487747 96488026 + 2 NA intron (NR_147149, intron 2 of 3) MER68C|LTR|ERVL 177183 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 193-215 chr9 31085261 31085428 + 2 NA Intergenic Intergenic 296146 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 276-215 chr2 17991505 17991691 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 112931 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 229-218 chr2 225133664 225133850 + 2 NA Intergenic Intergenic -91289 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 316-428 chr5 22261835 22262028 + 2 NA intron (NM_001364104, intron 2 of 13) intron (NM_001364104, intron 2 of 13) -48081 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 408-156 chr2 55944675 55944972 + 2 NA Intergenic L1ME3A|LINE|L1 -21041 NM_001039348 2202 Hs.76224 NM_004105 ENSG00000115380 EFEMP1 DHRD|DRAD|FBLN3|FBNL|FIBL-3|MLVT|MTLV|S1-5 EGF containing fibulin extracellular matrix protein 1 protein-coding 165-91 chr4 43752718 43752806 + 2 NA Intergenic L2a|LINE|L2 -260219 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 379-167 chr2 108990537 108990856 + 2 NA Intergenic Intergenic -1476 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 428-48 chr12 45362760 45363051 + 2 NA intron (NM_001025356, intron 8 of 19) L1MB7|LINE|L1 70215 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 360-89 chr12 55266259 55266483 + 2 NA Intergenic Intergenic 19083 NM_001005490 254783 Hs.554556 NM_001005490 ENSG00000197706 OR6C74 - olfactory receptor family 6 subfamily C member 74 protein-coding 333-577 chr8 103750449 103750641 + 2 NA intron (NM_001348496, intron 3 of 23) THE1D|LTR|ERVL-MaLR -68675 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 770-31 chr18 76750464 76750998 + 2 NA Intergenic MER65-int|LTR|ERV1 60702 NR_122073 400661 Hs.514963 NR_122073 ENSG00000276397 LINC01879 - long intergenic non-protein coding RNA 1879 ncRNA 363-107 chr12 88658996 88659307 + 2 NA Intergenic Intergenic -78678 NM_003994 4254 Hs.1048 NM_000899 ENSG00000049130 KITLG DCUA|DFNA69|FPH2|FPHH|KL-1|Kitl|MGF|SCF|SF|SHEP7|SLF KIT ligand protein-coding 542-54 chr14 49136909 49137334 + 2 NA Intergenic Intergenic 449259 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 322-38 chr1 208728505 208728699 + 2 NA promoter-TSS (NR_146914) promoter-TSS (NR_146914) -86 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 678-83 chr4 173450779 173451309 + 2 NA intron (NM_001329597, intron 2 of 3) intron (NM_001329597, intron 2 of 3) -51928 NM_007281 11341 Hs.7122 NM_007281 ENSG00000164106 SCRG1 SCRG-1 stimulator of chondrogenesis 1 protein-coding 283-282 chr3 12098830 12099015 + 2 NA intron (NM_133625, intron 1 of 12) L1MB7|LINE|L1 59990 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 281-185 chr19 36759167 36759331 + 2 NA intron (NM_001267779, intron 3 of 3) AluJr|SINE|Alu 13558 NM_001193552 342892 Hs.406307 NM_001193552 ENSG00000267041 ZNF850 ZNF850P zinc finger protein 850 protein-coding 238-282 chr5 5821492 5821714 + 2 NA Intergenic Intergenic 398926 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 703-25 chr13 62111014 62111610 + 2 NA Intergenic Intergenic -81764 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 249-252 chr3 6895443 6895690 + 2 NA intron (NM_000844, intron 1 of 9) MIRb|SINE|MIR -1549 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 262-310 chr4 62246284 62246469 + 2 NA Intergenic Intergenic -84611 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 312-251 chr2 114519872 114520137 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 58427 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 372-509 chr9 8390258 8390562 + 2 NA intron (NM_130392, intron 21 of 30) intron (NM_130392, intron 21 of 30) 343536 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 371-50 chr10 64924139 64924373 + 2 NA non-coding (NR_134456, exon 1 of 2) non-coding (NR_134456, exon 1 of 2) 262 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 359-230 chr2 73527886 73528085 + 2 NA intron (NM_015120, intron 11 of 22) L1MA3|LINE|L1 70882 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 256-329 chr5 104793169 104793374 + 2 NA Intergenic Intergenic -306203 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 415-238 chr6 75127816 75128155 + 2 NA TTS (NR_145788) TTS (NR_145788) 797 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 188-20 chr10 97009846 97009951 + 2 NA intron (NM_003061, intron 31 of 36) L1MB8|LINE|L1 -92858 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 305-288 chr2 189305705 189305895 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -126039 NM_000393 1290 Hs.445827 NM_000393 ENSG00000204262 COL5A2 EDSC|EDSCL2 collagen type V alpha 2 chain protein-coding 333-36 chr1 181925381 181925695 + 2 NA Intergenic L2a|LINE|L2 136174 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 404-45 chr10 72595505 72595810 + 2 NA intron (NM_006077, intron 1 of 11) intron (NM_006077, intron 1 of 11) 30422 NM_001195518 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 498-79 chr14 45327874 45328251 + 2 NA Intergenic MIRc|SINE|MIR -74860 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 367-288 chr3 109691028 109691346 + 2 NA Intergenic L1PA16|LINE|L1 88359 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 613-32 chr14 69090474 69090912 + 2 NA 3' UTR (NM_001284208, exon 7 of 7) 3' UTR (NM_001284208, exon 7 of 7) 61906 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 324-423 chr5 35579013 35579207 + 2 NA Intergenic L1MC1|LINE|L1 -38753 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 523-243 chr6 76159920 76160296 + 2 NA Intergenic Intergenic -87430 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 498-144 chr2 216278341 216278694 + 2 NA intron (NM_020814, intron 2 of 3) AluY|SINE|Alu 61628 NR_037701 150967 Hs.56876 NM_001199924 ENSG00000260804 LINC01963 PKI55 long intergenic non-protein coding RNA 1963 ncRNA 495-276 chrX 77266800 77267162 + 2 NA Intergenic L1P4|LINE|L1 -180408 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 555-199 chr8 59399952 59400473 + 2 NA Intergenic L1MB3|LINE|L1 281002 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 180-85 chr2 121140268 121140399 + 2 NA Intergenic Intergenic 144869 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 247-116 chr14 66211986 66212224 + 2 NA Intergenic MER34C|LTR|ERV1 -274266 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 237-235 chr3 39230347 39230519 + 2 NA Intergenic L1MDa|LINE|L1 -37838 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 245-357 chr8 126354767 126354981 + 2 NA Intergenic Intergenic 29379 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 246-208 chr2 153887930 153888088 + 2 NA intron (NM_052917, intron 1 of 12) intron (NM_052917, intron 1 of 12) 16087 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 355-233 chr2 35041502 35041732 + 2 NA Intergenic L1ME3|LINE|L1 364060 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 179-101 chr6 8315817 8315944 + 2 NA Intergenic L1M2|LINE|L1 119665 NM_001370478 51000 Hs.285847 NM_015948 ENSG00000124786 SLC35B3 C6orf196|CGI-19|PAPST2 solute carrier family 35 member B3 protein-coding 501-140 chr21 19467160 19467494 + 2 NA Intergenic LTR82A|LTR|ERVL 432428 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 485-14 chr1 177497318 177497745 + 2 NA Intergenic L1M1|LINE|L1 145945 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 331-62 chr10 81512870 81513113 + 2 NA Intergenic Intergenic -362203 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 308-252 chr2 173494840 173495087 + 2 NA Intergenic Intergenic 140091 NM_145810 83879 Hs.470654 NM_031942 ENSG00000144354 CDCA7 ICF3|JPO1 cell division cycle associated 7 protein-coding 368-188 chr17 3358718 3359008 + 2 NA Intergenic L1PREC2|LINE|L1 39547 NM_003553 8387 NM_003553 ENSG00000180016 OR1E1 HGM071|OR13-66|OR17-2|OR17-32|OR1E5|OR1E6|OR1E8P|OR1E9P|OST547 olfactory receptor family 1 subfamily E member 1 protein-coding 595-105 chr3 18686176 18686602 + 2 NA Intergenic Intergenic -240797 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 219-367 chr8 121874847 121875013 + 2 NA Intergenic Intergenic -233490 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 356-337 chr3 161944385 161944674 + 2 NA Intergenic L1MA10|LINE|L1 447721 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 216-204 chr21 31454714 31454886 + 2 NA intron (NM_001353690, intron 1 of 27) L1MC4|LINE|L1 104287 NM_001353691 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 238-141 chr17 72760014 72760241 + 2 NA intron (NM_001352692, intron 6 of 9) AluSz6|SINE|Alu -119655 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 275-151 chr18 1048041 1048212 + 2 NA Intergenic Intergenic -120133 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 260-438 chr8 98578478 98578674 + 2 NA intron (NM_006281, intron 8 of 10) intron (NM_006281, intron 8 of 10) 151618 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 297-430 chr7 36787191 36787392 + 2 NA Intergenic Intergenic -62742 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 330-191 chr16 54572672 54572880 + 2 NA Intergenic Intergenic -202077 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 485-26 chr10 35196558 35196994 + 2 NA intron (NM_001352445, intron 1 of 2) intron (NM_001352445, intron 1 of 2) 874 NM_182724 1390 Hs.200250 NM_001881 ENSG00000095794 CREM CREM-2|ICER|hCREM-2 cAMP responsive element modulator protein-coding 342-225 chr2 29352302 29352552 + 2 NA intron (NM_004304, intron 5 of 28) intron (NM_004304, intron 5 of 28) 122950 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 348-41 chr1 239868445 239868727 + 2 NA intron (NM_001347716, intron 7 of 7) intron (NM_001347716, intron 7 of 7) 31286 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 326-264 chr2 136911588 136911777 + 2 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 146137 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 209-9 chr1 97225522 97225701 + 2 NA intron (NM_000110, intron 19 of 22) L1MA9|LINE|L1 129688 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 152-69 chr4 31638334 31638435 + 2 NA Intergenic Intergenic 131840 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 364-65 chr10 67590750 67590999 + 2 NA intron (NM_001127384, intron 3 of 17) L1M5|LINE|L1 74786 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 341-573 chrX 35626534 35626848 + 2 NA Intergenic Intergenic -171651 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 213-48 chr10 109327045 109327191 + 2 NA Intergenic Intergenic 596128 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 283-469 chr9 108894391 108894595 + 2 NA intron (NM_001330749, intron 23 of 34) intron (NM_001330749, intron 23 of 34) 32227 NM_006687 10881 Hs.123530 NM_006687 ENSG00000187003 ACTL7A - actin like 7A protein-coding 376-295 chr4 121972498 121972865 + 2 NA Intergenic Intergenic -20621 NM_001130698 7222 Hs.150981 NM_003305 ENSG00000138741 TRPC3 SCA41|TRP3 transient receptor potential cation channel subfamily C member 3 protein-coding 251-101 chr14 84329079 84329293 + 2 NA Intergenic Intergenic -942746 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 262-326 chr4 113043730 113043886 + 2 NA intron (NM_001354275, intron 2 of 43) intron (NM_001354275, intron 2 of 43) -5606 NM_020977 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 456-105 chr15 57218559 57218893 + 2 NA promoter-TSS (NM_001306219) promoter-TSS (NM_001306219) -704 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 216-80 chr13 40043242 40043411 + 2 NA Intergenic MIR|SINE|MIR -138483 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 326-433 chr5 149946272 149946543 + 2 NA Intergenic L2a|LINE|L2 -1614 NM_000440 5145 Hs.567314 NM_000440 ENSG00000132915 PDE6A CGPR-A|PDEA|RP43 phosphodiesterase 6A protein-coding 369-420 chr8 126141718 126142021 + 2 NA Intergenic Intergenic -183626 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 303-212 chr2 75517317 75517566 + 2 NA intron (NM_032181, intron 3 of 3) intron (NM_032181, intron 3 of 3) -6627 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 319-54 chr10 47364696 47364988 + 2 NA TTS (NM_153034) TTS (NM_153034) 16479 NM_002900 5949 Hs.591928 NM_002900 ENSG00000265203 RBP3 D10S64|D10S65|D10S66|IRBP|RBPI|RP66 retinol binding protein 3 protein-coding 409-145 chr2 86194648 86195010 + 2 NA intron (NM_006839, intron 1 of 14) intron (NM_006839, intron 1 of 14) 941 NM_001100170 10989 Hs.148559 NM_006839 ENSG00000132305 IMMT HMP|MICOS60|MINOS2|Mic60|P87|P87/89|P89|PIG4|PIG52 inner membrane mitochondrial protein protein-coding 314-111 chr12 706240 706420 + 2 NA Intergenic L1MB4|LINE|L1 -42885 NM_016533 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 156-9 chr1 231941723 231941837 + 2 NA intron (NR_126441, intron 2 of 3) intron (NR_126441, intron 2 of 3) 15946 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 323-487 chr7 33698165 33698335 + 2 NA Intergenic Intergenic -206665 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 255-65 chr11 111764180 111764431 + 2 NA intron (NM_181700, intron 1 of 13) FLAM_A|SINE|Alu 2084 NM_001177562 5519 Hs.269128 NM_002716 ENSG00000137713 PPP2R1B PP2A-Abeta|PR65B protein phosphatase 2 scaffold subunit Abeta protein-coding 315-39 chr1 242496520 242496683 + 2 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) 28095 NM_152666 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 270-398 chr8 109500169 109500418 + 2 NA intron (NM_177531, intron 67 of 77) ERV3-16A3_I-int|LTR|ERVL -39407 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 552-84 chr17 53203892 53204402 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 218642 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 203-148 chr3 71056032 71056230 + 2 NA intron (NR_146142, intron 7 of 19) L1ME1|LINE|L1 8793 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 312-70 chr11 5097619 5097900 + 2 NA Intergenic Intergenic 28387 NR_145505 79296 NM_001348221 ENSG00000273085 OR52E1 OR52E1P olfactory receptor family 52 subfamily E member 1 (gene/pseudogene) protein-coding 249-470 chrX 94643648 94643830 + 2 NA Intergenic Intergenic 419487 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 840-35 chr3 144012905 144013548 + 2 NA Intergenic MER102b|DNA|hAT-Charlie 40145 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 724-58 chr4 52331835 52332402 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 280814 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 274-193 chr2 29813562 29813764 + 2 NA intron (NM_004304, intron 1 of 28) intron (NM_004304, intron 1 of 28) 107923 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 252-364 chr6 51266427 51266618 + 2 NA Intergenic Intergenic -355348 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 412-118 chr17 50248509 50248867 + 2 NA Intergenic L1MEg|LINE|L1 -22718 NM_001168215 162461 Hs.224630 NM_153229 ENSG00000167105 TMEM92 - transmembrane protein 92 protein-coding 315-71 chr10 116177332 116177529 + 2 NA intron (NM_145793, intron 3 of 8) intron (NM_145793, intron 3 of 8) 17359 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 385-12 chr1 174490272 174490524 + 2 NA intron (NM_001366446, intron 13 of 25) L1M1|LINE|L1 42434 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 223-365 chr9 78147612 78147828 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -88355 NM_001330691 84131 Hs.187621 NM_032171 ENSG00000148019 CEP78 C9orf81|CRDHL|IP63 centrosomal protein 78 protein-coding 352-131 chr13 106269938 106270231 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -106480 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 203-193 chr5 164154407 164154579 + 2 NA Intergenic Intergenic 312909 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 292-290 chr3 99123399 99123610 + 2 NA Intergenic MLT2A1|LTR|ERVL -221809 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 483-70 chr14 79758733 79759071 + 2 NA intron (NR_073547, intron 18 of 20) MIR3|SINE|MIR -452517 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 253-422 chr8 132713324 132713516 + 2 NA intron (NM_144649, intron 9 of 9) intron (NM_144649, intron 9 of 9) -37875 NR_135910 23639 Hs.591865 NM_012472 ENSG00000129295 LRRC6 CILD19|LRTP|TSLRP leucine rich repeat containing 6 protein-coding 303-487 chr9 24434129 24434297 + 2 NA Intergenic Intergenic 111463 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 313-515 chr8 24036637 24036822 + 2 NA Intergenic L1MA7|LINE|L1 -181923 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 608-38 chr14 33042121 33042524 + 2 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 103443 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 716-43 chr20 53243191 53243835 + 2 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 58230 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 157-88 chr4 32480094 32480214 + 2 NA Intergenic Intergenic 129116 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 336-472 chr5 155766972 155767164 + 2 NA Intergenic Intergenic -559689 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 355-281 chr20 25372880 25373212 + 2 NA intron (NM_001042472, intron 1 of 12) Tigger3c|DNA|TcMar-Tigger 17789 NM_001042472 26090 Hs.441550 NM_015600 ENSG00000100997 ABHD12 ABHD12A|BEM46L2|C20orf22|PHARC|dJ965G21.2|hABHD12 abhydrolase domain containing 12 protein-coding 254-251 chr3 114617082 114617267 + 2 NA intron (NM_001348803, intron 6 of 13) L2c|LINE|L2 7032 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 647-99 chr8 34615040 34615415 + 2 NA Intergenic Intergenic -168694 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 398-368 chr8 124907656 124907897 + 2 NA Intergenic HERVIP10FH-int|LTR|ERV1 -34232 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 616-93 chr2 221072414 221072773 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 499711 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 196-196 chr5 5855552 5855720 + 2 NA Intergenic Intergenic 432959 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 372-183 chr17 41604194 41604504 + 2 NA Intergenic L1ME4a|LINE|L1 8418 NM_005557 3868 Hs.655160 NM_005557 ENSG00000186832 KRT16 CK16|FNEPPK|K16|K1CP|KRT16A|NEPPK|PC1 keratin 16 protein-coding 139-58 chr3 148488271 148488343 + 2 NA Intergenic L1ME3B|LINE|L1 207416 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 204-182 chr22 26347450 26347608 + 2 NA intron (NM_001184776, intron 10 of 14) intron (NM_001184776, intron 10 of 14) -81731 NM_020437 57168 Hs.567547 NM_020437 ENSG00000128203 ASPHD2 - aspartate beta-hydroxylase domain containing 2 protein-coding 493-9 chr1 74787153 74787496 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -53916 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 227-391 chr9 30657723 30657888 + 2 NA Intergenic Intergenic -249351 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 261-359 chr7 82896213 82896405 + 2 NA intron (NM_033026, intron 9 of 24) L1MB8|LINE|L1 266575 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 230-399 chr9 106804247 106804408 + 2 NA Intergenic L1MA5A|LINE|L1 -58839 NM_001347997 58499 Hs.370379 NM_021224 ENSG00000148143 ZNF462 ZFPIP|Zfp462 zinc finger protein 462 protein-coding 145-56 chr3 122266487 122266588 + 2 NA intron (NM_001178065, intron 4 of 6) AluSx3|SINE|Alu -58711 NM_005213 1475 Hs.518198 NM_005213 ENSG00000121552 CSTA AREI|PSS4|STF1|STFA cystatin A protein-coding 343-195 chr17 52098718 52098923 + 2 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 59894 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 383-233 chr21 32163866 32164223 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -77749 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 265-31 chr10 30906521 30906720 + 2 NA intron (NM_001143766, intron 5 of 7) L1M4|LINE|L1 92897 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 538-165 chr4 20183662 20183997 + 2 NA Intergenic L1PB1|LINE|L1 -68076 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 397-56 chr11 96764839 96765088 + 2 NA Intergenic L2a|LINE|L2 256538 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 196-88 chr16 7762563 7762741 + 2 NA Intergenic Intergenic 429807 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 336-568 chr8 138136107 138136338 + 2 NA intron (NM_015912, intron 19 of 19) intron (NM_015912, intron 19 of 19) -52677 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 474-66 chr12 84885234 84885597 + 2 NA intron (NM_182767, intron 4 of 11) intron (NM_182767, intron 4 of 11) 27384 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 507-186 chr4 90768934 90769258 + 2 NA intron (NM_001145065, intron 7 of 10) MLT1F2-int|LTR|ERVL-MaLR 534065 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 751-43 chr22 28460761 28461317 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) 1170 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 850-30 chr3 167120399 167121191 + 2 NA Intergenic Intergenic 222112 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 464-137 chr2 181305239 181305648 + 2 NA TTS (NR_039637) TTS (NR_039637) 209 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 157-82 chr3 61105580 61105699 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 145813 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 300-20 chr1 177218191 177218395 + 2 NA intron (NM_021165, intron 1 of 7) L1M3b|LINE|L1 47335 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 290-180 chr18 11266327 11266529 + 2 NA Intergenic MIRb|SINE|MIR -117666 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 285-147 chr16 79405068 79405253 + 2 NA Intergenic Intergenic 195577 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 411-224 chr5 24319393 24319693 + 2 NA Intergenic Intergenic 325435 NM_001317224 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 286-423 chr7 57470735 57470924 + 2 NA 3' UTR (NM_001159279, exon 4 of 4) 3' UTR (NM_001159279, exon 4 of 4) 20652 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 277-433 chr8 129783993 129784143 + 2 NA intron (NM_031415, intron 1 of 13) L1MA2|LINE|L1 2556 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 355-257 chr2 141771587 141771825 + 2 NA intron (NM_018557, intron 2 of 90) MLT1A0|LTR|ERVL-MaLR 359995 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 676-35 chr14 78194504 78194984 + 2 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 24371 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 299-286 chr3 88667174 88667344 + 2 NA Intergenic Intergenic 328803 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 348-202 chr18 42448621 42448862 + 2 NA intron (NR_046174, intron 4 of 9) MSTA-int|LTR|ERVL-MaLR 262073 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 445-216 chr5 25095160 25095578 + 2 NA Intergenic Intergenic 95287 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 206-147 chr21 28361720 28361828 + 2 NA Intergenic L1MB1|LINE|L1 -133107 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 378-136 chr14 51522368 51522739 + 2 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 33425 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 269-336 chr6 21911819 21912055 + 2 NA intron (NR_015410, intron 5 of 11) intron (NR_015410, intron 5 of 11) 235256 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 496-236 chr6 65250447 65250841 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -50774 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 461-208 chr5 23778927 23779263 + 2 NA Intergenic Intergenic -172253 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 166-68 chr22 24500697 24500836 + 2 NA intron (NM_016327, intron 2 of 9) intron (NM_016327, intron 2 of 9) 5434 NM_016327 51733 Hs.731656 NM_016327 ENSG00000100024 UPB1 BUP1 beta-ureidopropionase 1 protein-coding 345-233 chr19 14717009 14717184 + 2 NA intron (NM_001352240, intron 11 of 12) intron (NM_001352240, intron 11 of 12) 27048 NM_001352244 84449 Hs.515215 NM_032433 ENSG00000160961 ZNF333 - zinc finger protein 333 protein-coding 296-419 chr6 147609954 147610136 + 2 NA Intergenic Intergenic 101355 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 306-239 chr2 79135992 79136199 + 2 NA non-coding (NR_002714, exon 1 of 1) non-coding (NR_002714, exon 1 of 1) 2332 NR_002714 5969 Hs.584797 NR_002714 REG1CP REG1P|REGL|RS regenerating family member 1 gamma, pseudogene pseudo 269-203 chr2 111947516 111947696 + 2 NA intron (NM_006343, intron 4 of 18) intron (NM_006343, intron 4 of 18) 48999 NM_006343 10461 Hs.306178 NM_006343 ENSG00000153208 MERTK MER|RP38|Tyro12|c-Eyk|c-mer MER proto-oncogene, tyrosine kinase protein-coding 218-323 chr8 76879175 76879336 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 87595 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 321-476 chr5 124985669 124985857 + 2 NA Intergenic MER39|LTR|ERV1 -51068 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 276-219 chr2 30820378 30820576 + 2 NA Intergenic Intergenic -13031 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 338-49 chr10 19784432 19784609 + 2 NA Intergenic Intergenic -31912 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 544-56 chr12 72239779 72240174 + 2 NA Intergenic L3|LINE|CR1 -32773 NM_013381 29953 Hs.199814 NM_013381 ENSG00000072657 TRHDE PAP-II|PGPEP2|TRH-DE thyrotropin releasing hormone degrading enzyme protein-coding 394-254 chr5 14094008 14094360 + 2 NA Intergenic Intergenic -49158 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 155-102 chrX 39592731 39592879 + 2 NA Intergenic Intergenic -68411 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 437-67 chr13 113481508 113481939 + 2 NA intron (NM_001014283, intron 2 of 6) AluSx|SINE|Alu 8988 NM_001014283 55208 Hs.682987 NM_018185 ENSG00000150401 DCUN1D2 C13orf17 defective in cullin neddylation 1 domain containing 2 protein-coding 487-5 chr1 29780825 29781189 + 2 NA Intergenic L1ME3E|LINE|L1 256605 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 309-176 chr15 62809672 62809856 + 2 NA intron (NM_015059, intron 48 of 55) intron (NM_015059, intron 48 of 55) -14193 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 122-25 chr2 132378566 132378671 + 2 NA Intergenic LOR1-int|LTR|ERV1 25951 NR_135203 339742 Hs.98178 NR_135203 FAM201B - family with sequence similarity 201 member B ncRNA 191-100 chr2 88565910 88566042 + 2 NA intron (NM_004836, intron 14 of 16) intron (NM_004836, intron 14 of 16) 27256 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 238-5 chr1 38439180 38439314 + 2 NA Intergenic L1MEc|LINE|L1 -35949 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 327-226 chr19 44327427 44327702 + 2 NA exon (NM_001083335, exon 5 of 5) exon (NM_001083335, exon 5 of 5) -22539 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 235-402 chr9 119521059 119521206 + 2 NA Intergenic Intergenic -151697 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 328-448 chr5 50241859 50242030 + 2 NA Intergenic ALR/Alpha|Satellite|centr 199344 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 310-247 chr2 98245552 98245789 + 2 NA intron (NM_001345864, intron 13 of 21) intron (NM_001345864, intron 13 of 21) 96137 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 284-414 chr8 114542295 114542467 + 2 NA Intergenic AluSx|SINE|Alu -1105442 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 445-63 chr14 32973733 32974030 + 2 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 35002 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 364-149 chr15 93264750 93264997 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 58807 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 258-220 chr2 233487576 233487773 + 2 NA intron (NM_001365479, intron 28 of 31) intron (NM_001365479, intron 28 of 31) 77899 NM_018218 55230 Hs.96513 NM_018218 ENSG00000085982 USP40 - ubiquitin specific peptidase 40 protein-coding 320-347 chr3 59710932 59711220 + 2 NA Intergenic Intergenic -52579 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 431-94 chr15 91995273 91995564 + 2 NA intron (NR_135775, intron 2 of 10) intron (NR_135775, intron 2 of 10) 141114 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 258-369 chr7 64389682 64389841 + 2 NA Intergenic L1MEg|LINE|L1 -43932 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 702-56 chr20 52883635 52884125 + 2 NA Intergenic L1ME4a|LINE|L1 -88478 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 361-29 chr1 246145537 246145747 + 2 NA intron (NM_022743, intron 5 of 11) MIRb|SINE|MIR 271770 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 274-185 chr19 37820167 37820342 + 2 NA non-coding (NR_040013, exon 3 of 5) non-coding (NR_040013, exon 3 of 5) 2843 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 294-496 chr9 75694784 75694998 + 2 NA Intergenic Intergenic -195753 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 258-5 chr1 48992503 48992667 + 2 NA intron (NM_001323575, intron 5 of 12) L1MA3|LINE|L1 -215616 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 296-111 chr12 103342100 103342338 + 2 NA intron (NM_001099336, intron 4 of 5) intron (NM_001099336, intron 4 of 5) 153749 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 330-327 chr20 60775237 60775452 + 2 NA Intergenic MamGypLTR1d|LTR|Gypsy 210782 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 183-37 chr12 67966511 67966662 + 2 NA intron (NR_120456, intron 2 of 2) LTR16C|LTR|ERVL -22859 NR_104124 100885789 Hs.439832 NR_104124 ENSG00000255733 IFNG-AS1 GS1-410F4.2|NEST|Tmevpg1 IFNG antisense RNA 1 ncRNA 764-42 chr20 24189416 24190081 + 2 NA Intergenic L1MB8|LINE|L1 -10019 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 211-308 chr8 118752743 118752905 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -130861 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 219-319 chr6 134219426 134219544 + 2 NA intron (NM_001143676, intron 2 of 13) AluSp|SINE|Alu -41624 NM_001143677 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 485-211 chr4 117193064 117193416 + 2 NA Intergenic L1MA2|LINE|L1 -107664 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 488-155 chr2 210685506 210685920 + 2 NA Intergenic MIR|SINE|MIR 68142 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 739-70 chr8 118642729 118643366 + 2 NA intron (NR_038210, intron 2 of 4) MER5A1|DNA|hAT-Charlie -21084 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 136-43 chr2 88008696 88008779 + 2 NA Intergenic L1ME3B|LINE|L1 -22947 NM_001024457 400966 Hs.728970 NM_001024457 ENSG00000187627 RGPD1 RGP1|RGPD2|RanBP2L2 RANBP2 like and GRIP domain containing 1 protein-coding 396-270 chr5 15196296 15196605 + 2 NA intron (NR_109944, intron 2 of 2) intron (NR_109944, intron 2 of 2) 70110 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 249-287 chr4 15439850 15440078 + 2 NA intron (NM_001135171, intron 2 of 2) intron (NM_001135171, intron 2 of 2) 11931 NM_031911 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 502-60 chr11 110870119 110870566 + 2 NA Intergenic Intergenic -157153 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 353-289 chr20 46614206 46614481 + 2 NA intron (NM_001193340, intron 2 of 12) LTR16C|LTR|ERVL 37116 NM_001193339 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 694-72 chr2 239323073 239323759 + 2 NA intron (NM_006037, intron 2 of 26) intron (NM_006037, intron 2 of 26) 17954 NR_036229 100423043 NR_036229 ENSG00000265215 MIR4269 - microRNA 4269 ncRNA 388-162 chr2 81192541 81192783 + 2 NA Intergenic Intergenic 274284 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 172-40 chr15 60513754 60513861 + 2 NA intron (NM_134260, intron 5 of 11) intron (NM_134260, intron 5 of 11) 34629 NR_120339 101928784 Hs.655155 NR_120339 ENSG00000245534 RORA-AS1 - RORA antisense RNA 1 ncRNA 411-299 chr8 133367564 133367818 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -70387 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 235-355 chr8 78981879 78982085 + 2 NA Intergenic CR1_Mam|LINE|CR1 144453 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 354 chr1 5434299 5434492 + 2 NA Intergenic Intergenic 428346 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 336-290 chr2 144846447 144846757 + 2 NA intron (NR_033870, intron 2 of 4) MLT1F2|LTR|ERVL-MaLR 178635 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 542-194 chr7 3080354 3080755 + 2 NA Intergenic Intergenic -36687 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 288-370 chr6 67037880 67038043 + 2 NA Intergenic Intergenic -1017390 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 244-371 chr8 88641520 88641725 + 2 NA Intergenic Intergenic -314139 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 373-172 chr18 78121537 78121875 + 2 NA Intergenic L2c|LINE|L2 -127979 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 210-151 chr2 229080533 229080701 + 2 NA intron (NM_001330157, intron 1 of 1) L2c|LINE|L2 151475 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 149-31 chr14 61617083 61617204 + 2 NA intron (NR_039985, intron 1 of 2) intron (NR_039985, intron 1 of 2) -46490 NR_110416 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 335-348 chr3 72737322 72737641 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -73232 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 482-129 chr2 130790540 130790955 + 2 NA Intergenic Intergenic 34403 NM_001105195 205147 Hs.369289 NM_152698 ENSG00000178171 AMER3 FAM123C APC membrane recruitment protein 3 protein-coding 490-280 chr8 17059340 17059665 + 2 NA intron (NR_146233, intron 1 of 15) L1M5|LINE|L1 32264 NM_001349810 286097 Hs.403594 NM_181723 ENSG00000155970 MICU3 EFHA2 mitochondrial calcium uptake family member 3 protein-coding 363-487 chrX 74803122 74803444 + 2 NA intron (NM_001008537, intron 1 of 3) AluY|SINE|Alu 122169 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 724-104 chr9 27206305 27206895 + 2 NA exon (NM_001290078, exon 13 of 21) exon (NM_001290078, exon 13 of 21) 76193 NR_026679 158035 Hs.201554 NR_026679 ENSG00000283945 LINC00032 C9orf14|NCRNA00032 long intergenic non-protein coding RNA 32 ncRNA 247-121 chr14 85938135 85938317 + 2 NA intron (NR_110155, intron 1 of 3) L1MC3|LINE|L1 3548 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 314-515 chr6 159425668 159425884 + 2 NA Intergenic Intergenic 42245 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 435-196 chr5 92518554 92518812 + 2 NA Intergenic Intergenic 1052660 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 330-389 chr4 128065185 128065494 + 2 NA intron (NR_146772, intron 1 of 19) (TTTC)n|Simple_repeat|Simple_repeat 4027 NM_001350531 55132 Hs.654971 NM_018078 ENSG00000138709 LARP1B LARP2 La ribonucleoprotein domain family member 1B protein-coding 395-349 chr8 138231575 138231835 + 2 NA intron (NM_015912, intron 7 of 19) MIRb|SINE|MIR -148160 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 236-179 chr2 104787476 104787641 + 2 NA Intergenic Intergenic -29839 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 520-148 chr2 106778959 106779343 + 2 NA Intergenic L1M4c|LINE|L1 106877 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 119-53 chr7 30519842 30519916 + 2 NA Intergenic Intergenic -15038 NM_001199816 79017 Hs.530024 NM_024051 ENSG00000006625 GGCT C7orf24|CRF21|GCTG|GGC gamma-glutamylcyclotransferase protein-coding 489-127 chr2 35634677 35635080 + 2 NA Intergenic Intergenic 163473 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 224-23 chr1 236704576 236704781 + 2 NA intron (NM_001278344, intron 1 of 22) MER21A|LTR|ERVL 18179 NM_001278343 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 268-124 chr14 71585915 71586101 + 2 NA promoter-TSS (NM_001284246) promoter-TSS (NM_001284246) -290 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 192-197 chr7 124705256 124705393 + 2 NA Intergenic L1MA4A|LINE|L1 60468 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 387-48 chr11 9719311 9719630 + 2 NA intron (NM_015055, intron 3 of 11) AluSx|SINE|Alu -38823 NR_036485 283104 Hs.632156 NR_036485 ENSG00000246273 SBF2-AS1 - SBF2 antisense RNA 1 ncRNA 422-50 chr11 115714718 115715054 + 2 NA Intergenic MIRb|SINE|MIR 19876 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 377-433 chrX 8335096 8335318 + 2 NA Intergenic Intergenic -129623 NM_001001888 425054 Hs.279737 NM_001001888 ENSG00000205642 VCX3B VCX-C|VCXC variable charge X-linked 3B protein-coding 693-50 chr19 52426344 52426846 + 2 NA Intergenic MER70A|LTR|ERVL -2553 NM_001291368 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 209-66 chr11 130940265 130940442 + 2 NA Intergenic L1M5|LINE|L1 -23866 NM_001347921 399979 Hs.444024 NM_014758 ENSG00000120451 SNX19 CHET8 sorting nexin 19 protein-coding 142-77 chr8 63784397 63784518 + 2 NA intron (NR_038875, intron 2 of 2) MIR3|SINE|MIR 15027 NR_038875 286184 Hs.586402 NR_038875 ENSG00000253734 LINC01289 - long intergenic non-protein coding RNA 1289 ncRNA 220-366 chr8 88553603 88553810 + 2 NA Intergenic Intergenic -226223 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 330-365 chr3 167514284 167514460 + 2 NA intron (NM_001348951, intron 16 of 18) L1PA10|LINE|L1 -40240 NM_001012303 5276 Hs.445555 NM_006217 ENSG00000114204 SERPINI2 MEPI|PANCPIN|PI14|TSA2004 serpin family I member 2 protein-coding 352-503 chr7 71383118 71383440 + 2 NA intron (NM_022479, intron 2 of 10) MER2|DNA|TcMar-Tigger -75509 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 423-227 chr5 78785758 78786045 + 2 NA intron (NM_000046, intron 6 of 7) MLT1E2|LTR|ERVL-MaLR -137129 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 243-82 chr11 114935791 114935940 + 2 NA Intergenic Intergenic 257338 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 181-98 chr3 180880239 180880352 + 2 NA Intergenic Intergenic -10117 NR_109986 101928882 Hs.734668 NR_109986 ENSG00000285336 LOC101928882 - uncharacterized LOC101928882 ncRNA 269-145 chr16 28005599 28005852 + 2 NA intron (NM_001109763, intron 1 of 6) MIR|SINE|MIR 57989 NM_001109763 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 362-411 chr7 106838550 106838832 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -26591 NM_001282426 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 403-166 chr2 158257606 158257983 + 2 NA intron (NM_138803, intron 9 of 13) intron (NM_138803, intron 9 of 13) 91144 NR_038850 554201 Hs.570262 NR_038850 ENSG00000227480 CCDC148-AS1 - CCDC148 antisense RNA 1 ncRNA 322-27 chr1 158551473 158551674 + 2 NA Intergenic Intergenic -3468 NM_001005189 391112 Hs.553780 NM_001005189 ENSG00000197532 OR6Y1 OR1-11|OR6Y2 olfactory receptor family 6 subfamily Y member 1 protein-coding 586-7 chr1 73556577 73557164 + 2 NA Intergenic Intergenic -117809 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 364-279 chr3 89828866 89829197 + 2 NA Intergenic Intergenic 721410 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 177-6 chr1 103893832 103893945 + 2 NA Intergenic L2|LINE|L2 144047 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 377-353 chr6 137961616 137961871 + 2 NA Intergenic MIR|SINE|MIR -15943 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 318-262 chr2 56056584 56056797 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -9364 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 511-94 chr17 71104851 71105280 + 2 NA intron (NR_104152, intron 3 of 3) intron (NR_104152, intron 3 of 3) 97114 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 246-371 chr7 49781243 49781425 + 2 NA intron (NR_136188, intron 1 of 3) intron (NR_136188, intron 1 of 3) 6001 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 360-157 chr16 29931389 29931691 + 2 NA Intergenic Intergenic -5314 NR_110933 253980 Hs.534590 NM_178863 ENSG00000174943 KCTD13 BACURD1|FKSG86|PDIP1|POLDIP1|hBACURD1 potassium channel tetramerization domain containing 13 protein-coding 237-222 chr22 43319066 43319249 + 2 NA intron (NM_173050, intron 3 of 21) MLT1B|LTR|ERVL-MaLR 24215 NM_173050 80274 Hs.133995 NM_152514 ENSG00000159307 SCUBE1 - signal peptide, CUB domain and EGF like domain containing 1 protein-coding 282-431 chr7 69943425 69943663 + 2 NA intron (NM_015570, intron 2 of 18) intron (NM_015570, intron 2 of 18) 345069 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 484-210 chr5 41197439 41197837 + 2 NA intron (NM_000065, intron 4 of 17) intron (NM_000065, intron 4 of 17) 15894 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 281-103 chr13 53531577 53531771 + 2 NA Intergenic L1MEf|LINE|L1 -283745 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 994-9 chr2 194985859 194986567 + 2 NA Intergenic L1MA4|LINE|L1 255618 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 349-319 chr3 5641393 5641598 + 2 NA Intergenic Intergenic -391240 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 344-161 chr15 91442714 91442929 + 2 NA Intergenic L1MEf|LINE|L1 -20518 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 402-150 chr2 69419665 69419917 + 2 NA intron (NR_045632, intron 2 of 5) L1M5|LINE|L1 17644 NM_015700 27247 Hs.430439 NM_015700 ENSG00000169599 NFU1 CGI-33|HIRIP|HIRIP5|MMDS1|NIFUC|Nfu|NifU NFU1 iron-sulfur cluster scaffold protein-coding 272-155 chr17 70662850 70662996 + 2 NA Intergenic Intergenic 493388 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 236-227 chr3 82488973 82489157 + 2 NA Intergenic L1ME2|LINE|L1 502923 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 256-387 chr7 49997019 49997175 + 2 NA intron (NM_001159878, intron 6 of 7) ERVL-B4-int|LTR|ERVL 96149 NM_007009 11055 Hs.388841 NM_007009 ENSG00000042813 ZPBP ZPBP1 zona pellucida binding protein protein-coding 448-188 chr4 104235217 104235607 + 2 NA Intergenic Intergenic -255553 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 664-29 chr12 17420930 17421379 + 2 NA Intergenic L1M4|LINE|L1 167924 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 417-245 chr6 107747125 107747359 + 2 NA intron (NM_001286408, intron 2 of 6) intron (NM_001286408, intron 2 of 6) -15092 NM_001286409 256380 Hs.486109 NM_198081 ENSG00000146285 SCML4 dJ47M23.1 Scm polycomb group protein like 4 protein-coding 246-11 chr1 107802603 107802758 + 2 NA intron (NM_006113, intron 2 of 26) L1MA4|LINE|L1 -94543 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 139-82 chr6 123545603 123545693 + 2 NA intron (NM_001256020, intron 4 of 8) intron (NM_001256020, intron 4 of 8) 91302 NM_001256020 10345 Hs.144744 NM_006073 ENSG00000186439 TRDN CPVT5|TDN|TRISK triadin protein-coding 480-98 chr16 35450631 35451058 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 29752 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 324-321 chr21 19906278 19906529 + 2 NA Intergenic Intergenic -6648 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 293-178 chr2 20927322 20927542 + 2 NA Intergenic Intergenic -104302 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 539-170 chr5 109242062 109242404 + 2 NA intron (NR_149040, intron 3 of 3) MLT1J|LTR|ERVL-MaLR 84136 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 387-112 chr14 87709590 87709887 + 2 NA Intergenic LTR33B|LTR|ERVL -54444 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 237-38 chr10 91663433 91663662 + 2 NA Intergenic L2a|LINE|L2 -30476 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 358-208 chr2 66782789 66783139 + 2 NA Intergenic Intergenic -79737 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 216-95 chr14 54753536 54753678 + 2 NA intron (NM_015589, intron 5 of 11) LTR5A|LTR|ERVK -1226 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 248-438 chrX 46265143 46265359 + 2 NA Intergenic Intergenic 62423 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 243-480 chr9 102272638 102272797 + 2 NA Intergenic Intergenic -246920 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 466-5 chr1 84242167 84242579 + 2 NA Intergenic LTR33A|LTR|ERVL -56165 NM_001010971 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 200-174 chr3 73722705 73722870 + 2 NA Intergenic L1MEd|LINE|L1 -86457 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 483-114 chr2 66106850 66107220 + 2 NA Intergenic Intergenic 251293 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 238-268 chr4 63466399 63466555 + 2 NA Intergenic Intergenic 942973 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 357-454 chr8 118181906 118182116 + 2 NA intron (NR_146234, intron 4 of 5) L4_B_Mam|LINE|RTE-X -70192 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 272-486 chrX 39028789 39029024 + 2 NA Intergenic L1MA5|LINE|L1 -225023 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 329-254 chr2 4857798 4857980 + 2 NA Intergenic L1MEc|LINE|L1 -201667 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 256-108 chr13 80596795 80597026 + 2 NA Intergenic Intergenic -255784 NM_005842 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 333-39 chr1 191882124 191882429 + 2 NA Intergenic Intergenic -276186 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 448-159 chr3 66914183 66914469 + 2 NA Intergenic AluSz|SINE|Alu -83981 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 199-120 chr2 105026273 105026382 + 2 NA intron (NR_110603, intron 1 of 2) CR1_Mam|LINE|CR1 -11742 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 224-210 chr3 129307502 129307660 + 2 NA Intergenic Intergenic -8690 NR_026991 339942 Hs.450096 NM_001025468 H1FX-AS1 C3orf47 H1FX antisense RNA 1 ncRNA 539-53 chr12 59528349 59528836 + 2 NA Intergenic SATR1|Satellite|Satellite -67437 NM_001270623 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 351-276 chr21 32211573 32211798 + 2 NA Intergenic Intergenic 67364 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 255-362 chr6 123722685 123722912 + 2 NA Intergenic LTR16A1|LTR|ERVL -81048 NM_001300738 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 613-119 chr6 118752228 118752681 + 2 NA Intergenic L2-3_Crp|LINE|L2 -30254 NR_037662 100287632 Hs.334026 NR_037662 SELENOKP3 - selenoprotein K pseudogene 3 pseudo 379-276 chr5 120955212 120955535 + 2 NA Intergenic L1MA4A|LINE|L1 -367177 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 124-57 chr5 24706650 24706767 + 2 NA Intergenic L1MA5|LINE|L1 -61730 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 566-62 chr16 84329620 84330020 + 2 NA TTS (NM_021197) TTS (NM_021197) 34942 NM_021197 58189 Hs.36688 NM_021197 ENSG00000103175 WFDC1 PS20 WAP four-disulfide core domain 1 protein-coding 356-119 chr12 127556464 127556778 + 2 NA Intergenic Intergenic 79846 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 231-210 chr22 48229750 48229902 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -44538 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 495-162 chr3 138666239 138666529 + 2 NA intron (NM_006219, intron 19 of 23) AluJr|SINE|Alu 41237 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 340-284 chr2 142506039 142506363 + 2 NA Intergenic MER68|LTR|ERVL -371463 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 391-117 chr15 35799112 35799470 + 2 NA intron (NR_038251, intron 2 of 2) intron (NR_038251, intron 2 of 2) -127565 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 286-485 chrX 23016500 23016734 + 2 NA intron (NR_073010, intron 3 of 11) (ATTTAC)n|Simple_repeat|Simple_repeat 16657 NM_182699 168400 Hs.434416 NM_182699 ENSG00000184735 DDX53 CAGE|CT26 DEAD-box helicase 53 protein-coding 465-18 chr1 248198715 248199175 + 2 NA Intergenic Intergenic -4123 NM_001004689 127062 Hs.553581 NM_001004689 ENSG00000228198 OR2M3 OR1-54|OR2M3P|OR2M6|OST003 olfactory receptor family 2 subfamily M member 3 protein-coding 318-31 chr1 179717006 179717185 + 2 NA Intergenic L1M3|LINE|L1 -10681 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 262-240 chr2 234034701 234034890 + 2 NA Intergenic Intergenic -15907 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 396-93 chr12 106181633 106181997 + 2 NA Intergenic Intergenic -41782 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 374-311 chr5 82019934 82020224 + 2 NA intron (NM_031482, intron 2 of 7) LTR78B|LTR|ERV1 48056 NM_031482 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 254-358 chr6 144185265 144185446 + 2 NA intron (NM_003764, intron 1 of 1) intron (NM_003764, intron 1 of 1) 34838 NM_003764 8676 Hs.118958 NM_003764 ENSG00000135604 STX11 FHL4|HLH4|HPLH4 syntaxin 11 protein-coding 325-342 chr3 31921474 31921729 + 2 NA intron (NM_001174060, intron 1 of 10) L1MC3|LINE|L1 -60149 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 370-224 chr2 49278085 49278293 + 2 NA Intergenic Intergenic -123662 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 339-470 chr5 153924619 153924852 + 2 NA Intergenic L1MA3|LINE|L1 -25748 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 363-44 chr10 29035578 29035792 + 2 NA Intergenic Intergenic 189277 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 475-141 chr2 121789963 121790367 + 2 NA Intergenic L1ME4a|LINE|L1 34514 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 161-71 chr3 159579650 159579737 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 188919 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 313-181 chr16 20618778 20618983 + 2 NA Intergenic Intergenic -42513 NM_182617 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 411-159 chr20 6500704 6501083 + 2 NA intron (NR_109953, intron 3 of 3) MLT1I|LTR|ERVL-MaLR 74161 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 263-28 chr1 190365640 190365809 + 2 NA intron (NM_199051, intron 2 of 7) (ATATT)n|Simple_repeat|Simple_repeat 110286 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 616-37 chr12 127508564 127509079 + 2 NA Intergenic L1MA5A|LINE|L1 127646 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 121-67 chr8 106880550 106880635 + 2 NA Intergenic Intergenic -110348 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 462-30 chr10 67746043 67746414 + 2 NA Intergenic L1MA4|LINE|L1 -50033 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 571-41 chr12 127830924 127831307 + 2 NA Intergenic Intergenic -50502 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 381-349 chr7 13964557 13964764 + 2 NA intron (NM_001163148, intron 5 of 12) intron (NM_001163148, intron 5 of 12) 21854 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 411-26 chr10 39029679 39030013 + 2 NA Intergenic ALR/Alpha|Satellite|centr 333250 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 249-449 chr9 84290730 84290924 + 2 NA intron (NM_022127, intron 11 of 18) intron (NM_022127, intron 11 of 18) 49931 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 431-276 chr7 109762719 109763120 + 2 NA Intergenic L2b|LINE|L2 197294 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 334-559 chr8 144123868 144124108 + 2 NA Intergenic AluJo|SINE|Alu -13786 NM_016458 51236 Hs.300224 NM_016458 ENSG00000235173 HGH1 BRP16|BRP16L|C8orf30A|C8orf30B|FAM203A|FAM203B HGH1 homolog protein-coding 244-34 chr10 63690509 63690714 + 2 NA Intergenic L1ME5|LINE|L1 -168721 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 329-172 chr14 88309153 88309449 + 2 NA intron (NM_021161, intron 1 of 6) intron (NM_021161, intron 1 of 6) 13968 NM_138317 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 419-260 chr6 152019170 152019406 + 2 NA intron (NM_001122741, intron 6 of 8) intron (NM_001122741, intron 6 of 8) 148999 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 185-139 chr3 94833096 94833241 + 2 NA Intergenic L1PREC2|LINE|L1 -105095 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 304-363 chr3 175992651 175992864 + 2 NA Intergenic Intergenic -216424 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 485-194 chr3 191991216 191991686 + 2 NA Intergenic L1PBa1|LINE|L1 -247179 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 211-122 chr18 77797635 77797786 + 2 NA Intergenic L1MDa|LINE|L1 196017 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 142-36 chr2 61533400 61533529 + 2 NA intron (NM_003400, intron 2 of 24) intron (NM_003400, intron 2 of 24) 4892 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 323-126 chr13 61961948 61962150 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 67499 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 352-235 chr2 60061285 60061517 + 2 NA Intergenic L1ME4a|LINE|L1 321635 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 258-352 chr6 136933418 136933594 + 2 NA Intergenic LTR85c|LTR|Gypsy? 11205 NM_001008783 340146 Hs.369703 NM_001008783 ENSG00000182747 SLC35D3 FRCL1 solute carrier family 35 member D3 protein-coding 260-371 chr6 51388891 51389100 + 2 NA Intergenic Intergenic -232875 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 242-383 chr7 133942359 133942500 + 2 NA intron (NM_021807, intron 14 of 17) intron (NM_021807, intron 14 of 17) -117541 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 360-9 chr1 82118007 82118193 + 2 NA Intergenic L2a|LINE|L2 315647 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 576-116 chr4 57268475 57268895 + 2 NA Intergenic Intergenic -157187 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 316-88 chr11 2604061 2604366 + 2 NA intron (NM_181798, intron 10 of 15) AluSx1|SINE|Alu 95785 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 375-21 chr1 197216655 197216984 + 2 NA intron (NM_001257965, intron 1 of 14) MamGyp-int|LTR|Gypsy 15315 NM_001257965 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 544-16 chr1 186749415 186749921 + 2 NA Intergenic Intergenic 69014 NR_125801 103752588 Hs.441636 NR_125801 ENSG00000273129 PACERR PACER|PTGS2-AS1|PTGS2AS1 PTGS2 antisense NFKB1 complex-mediated expression regulator RNA ncRNA 180-116 chr4 59596870 59597002 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat 583363 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 300-121 chr14 82226654 82226850 + 2 NA Intergenic Intergenic -415880 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 340-145 chr14 48500753 48501080 + 2 NA Intergenic Intergenic -705902 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 327-330 chr3 68172787 68173071 + 2 NA intron (NM_001252216, intron 2 of 4) L1MB7|LINE|L1 168682 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 252-196 chr2 81538894 81539061 + 2 NA Intergenic AluSc|SINE|Alu -72031 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 340-142 chr14 41879549 41879812 + 2 NA intron (NM_001330106, intron 2 of 4) L1MEf|LINE|L1 272824 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 276-324 chr4 31138281 31138544 + 2 NA intron (NM_001173523, intron 2 of 2) Tigger15a|DNA|TcMar-Tigger -32732 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 173-9 chr10 44825445 44825577 + 2 NA non-coding (NR_033842, exon 6 of 8) non-coding (NR_033842, exon 6 of 8) -85805 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 272-462 chr8 131593590 131593825 + 2 NA Intergenic Intergenic -310386 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 302-271 chr22 48202812 48203080 + 2 NA Intergenic Intergenic -71418 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 326-196 chr17 52784628 52784832 + 2 NA Intergenic L1MEc|LINE|L1 -77391 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 452-241 chr6 166329194 166329591 + 2 NA intron (NR_130113, intron 4 of 6) intron (NR_130113, intron 4 of 6) 13153 NR_130112 113402 Hs.487143 NM_145169 ENSG00000198818 SFT2D1 C6orf83|pRGR1 SFT2 domain containing 1 protein-coding 330-446 chr5 158645274 158645536 + 2 NA Intergenic L1PREC2|LINE|L1 -235632 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 216-168 chr2 59943073 59943202 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 439899 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 272-237 chr2 239032151 239032354 + 2 NA Intergenic L1MB8|LINE|L1 36662 NR_039642 100616397 NR_039642 ENSG00000266109 MIR4440 mir-4440 microRNA 4440 ncRNA 271-440 chr8 86893704 86893851 + 2 NA intron (NM_173538, intron 2 of 10) intron (NM_173538, intron 2 of 10) 27362 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 243-443 chr8 64864752 64864985 + 2 NA Intergenic Intergenic -66131 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 227-7 chr1 57246881 57247101 + 2 NA intron (NM_001353980, intron 5 of 5) MSTA-int|LTR|ERVL-MaLR 176121 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 182-21 chr10 53430355 53430511 + 2 NA Intergenic Intergenic -658733 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 384-47 chr10 119976700 119976957 + 2 NA Intergenic L1ME4a|LINE|L1 18315 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 358-28 chr1 225191343 225191552 + 2 NA intron (NM_001367479, intron 37 of 85) L1MB5|LINE|L1 236591 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 421-320 chr9 98421629 98421996 + 2 NA intron (NM_005458, intron 7 of 18) L1M5|LINE|L1 -166163 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 368-14 chr1 86601503 86601777 + 2 NA intron (NR_135837, intron 4 of 4) L1MA2|LINE|L1 -32636 NR_024604 9629 Hs.673847 NM_004921 ENSG00000153923 CLCA3P CLCA3 chloride channel accessory 3, pseudogene pseudo 567-130 chr4 79959234 79959641 + 2 NA intron (NM_001286781, intron 16 of 16) intron (NM_001286781, intron 16 of 16) 113792 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 402-191 chr21 24165649 24165971 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 155567 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 603-35 chr12 111237034 111237418 + 2 NA intron (NM_015267, intron 3 of 21) intron (NM_015267, intron 3 of 21) -66916 NR_106818 102465455 NR_106818 ENSG00000273700 MIR6760 hsa-mir-6760 microRNA 6760 ncRNA 307-304 chr3 70525459 70525661 + 2 NA Intergenic Intergenic -212922 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 426-72 chr14 46793810 46794115 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -142181 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 506-266 chr7 41401112 41401532 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X -292597 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 294-125 chr14 71826741 71827020 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -105291 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 346-99 chr12 29747920 29748147 + 2 NA intron (NM_001367875, intron 5 of 19) intron (NM_001367875, intron 5 of 19) 35909 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 312-164 chr15 61693774 61693949 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR -36057 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 156-79 chr5 10301065 10301187 + 2 NA intron (NM_138809, intron 1 of 5) L1ME3Cz|LINE|L1 6776 NM_138809 134147 Hs.192586 NM_138809 ENSG00000164237 CMBL JS-1 carboxymethylenebutenolidase homolog protein-coding 494-88 chr16 79903981 79904303 + 2 NA Intergenic MER20|DNA|hAT-Charlie 108893 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 214-219 chr3 140486236 140486405 + 2 NA intron (NM_022131, intron 8 of 16) L1MEf|LINE|L1 22469 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 199-142 chr20 42963663 42963832 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) -4996 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 580-125 chr3 180260112 180260503 + 2 NA Intergenic L1MA1|LINE|L1 -153866 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 544-138 chr20 59154154 59154692 + 2 NA Intergenic Intergenic -36597 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 230-184 chr2 151665759 151665938 + 2 NA intron (NM_001271208, intron 41 of 182) intron (NM_001271208, intron 41 of 182) 68628 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 382-428 chr8 137701611 137701960 + 2 NA Intergenic AluJb|SINE|Alu -288197 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 400-171 chr2 115765706 115766007 + 2 NA intron (NM_001321912, intron 13 of 25) intron (NM_001321912, intron 13 of 25) 422041 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 259-51 chr10 65880803 65881006 + 2 NA Intergenic Intergenic 309479 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 348-196 chr18 2811642 2811849 + 2 NA Intergenic L1M4b|LINE|L1 -35261 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 182-41 chr12 103073485 103073631 + 2 NA Intergenic Intergenic -78284 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 511-133 chr2 148751402 148751731 + 2 NA intron (NM_015630, intron 3 of 13) FLAM_A|SINE|Alu 106815 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 348-47 chr10 33367797 33368042 + 2 NA Intergenic L2a|LINE|L2 -33014 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 303-190 chr19 53233140 53233371 + 2 NA Intergenic L1MB7|LINE|L1 20307 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 349-221 chr19 5503789 5504090 + 2 NA Intergenic Intergenic 48522 NM_181710 148066 Hs.126496 NM_181710 ENSG00000105428 ZNRF4 RNF204|SPERIZIN|Ssrzf1|spzn zinc and ring finger 4 protein-coding 275-170 chr19 37619045 37619260 + 2 NA Intergenic AluSz6|SINE|Alu 24276 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 374-307 chr5 44993085 44993354 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 184272 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 426-272 chr7 49561419 49561720 + 2 NA Intergenic L1MA9|LINE|L1 -212069 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 212-260 chr5 92338879 92339069 + 2 NA Intergenic Intergenic -955657 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 315-6 chr1 34535743 34535963 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger 133841 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 247-305 chr4 105054680 105054835 + 2 NA Intergenic L1PA11|LINE|L1 -91118 NM_017628 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 266-374 chr6 133034295 133034505 + 2 NA Intergenic L3|LINE|CR1 -53680 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 481-36 chr10 66440968 66441301 + 2 NA intron (NM_001127384, intron 11 of 17) FLAM_C|SINE|Alu -484902 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 334-312 chr20 43149536 43149842 + 2 NA intron (NM_133170, intron 1 of 31) MIRb|SINE|MIR 40217 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 374-432 chrX 119859354 119859701 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger -6499 NM_080632 65109 Hs.103832 NM_023010 ENSG00000125351 UPF3B HUPF3B|MRX62|MRXS14|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X|Upf3p-X UPF3B regulator of nonsense mediated mRNA decay protein-coding 308-108 chr12 56394417 56394692 + 2 NA Intergenic AluSz|SINE|Alu -31697 NM_001638 319 Hs.534302 NM_001638 ENSG00000175336 APOF Apo-F|LTIP apolipoprotein F protein-coding 279-26 chr1 240305088 240305304 + 2 NA intron (NM_020066, intron 8 of 17) L1MEf|LINE|L1 213313 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 335-581 chrX 75741859 75742179 + 2 NA non-coding (NR_030737, exon 1 of 1) non-coding (NR_030737, exon 1 of 1) 1060 NR_030737 286495 Hs.567832 NR_030737 TTC3P1 RNF105L|TTC3L tetratricopeptide repeat domain 3 pseudogene 1 pseudo 263-327 chr5 66276275 66276481 + 2 NA Intergenic Intergenic -66932 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 349-324 chr3 32918959 32919195 + 2 NA Intergenic Intergenic -32567 NM_005508 1233 Hs.184926 NM_005508 ENSG00000183813 CCR4 CC-CKR-4|CD194|CKR4|CMKBR4|ChemR13|HGCN:14099|K5-5 C-C motif chemokine receptor 4 protein-coding 571-112 chr3 117231976 117232378 + 2 NA Intergenic Intergenic 310746 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 369-422 chr8 129383691 129383921 + 2 NA intron (NR_130918, intron 1 of 2) L2c|LINE|L2 100336 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 227-32 chr10 34567570 34567733 + 2 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 247645 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 278-355 chr5 144733980 144734160 + 2 NA Intergenic L1PA16|LINE|L1 528679 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 194-224 chr9 77974422 77974531 + 2 NA intron (NM_002072, intron 1 of 6) MIR|SINE|MIR 57335 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 306-528 chr8 132429137 132429354 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 18017 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 328-567 chr8 91181711 91181931 + 2 NA intron (NR_148895, intron 7 of 10) intron (NR_148895, intron 7 of 10) -23664 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 324-23 chr1 157802687 157802995 + 2 NA intron (NM_001159397, intron 3 of 9) intron (NM_001159397, intron 3 of 9) 17279 NM_052938 115350 Hs.656112 NM_052938 ENSG00000163534 FCRL1 CD307a|FCRH1|IFGP1|IRTA5 Fc receptor like 1 protein-coding 258-314 chr5 29589617 29589835 + 2 NA Intergenic L1M2|LINE|L1 -193750 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 320-261 chr2 77897690 77897915 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) -18132 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 255-17 chr1 219761216 219761429 + 2 NA Intergenic Intergenic -148177 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 265-411 chr9 28744259 28744441 + 2 NA intron (NM_001354574, intron 2 of 5) L1M4b|LINE|L1 -25045 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 679-108 chr8 112282900 112283500 + 2 NA intron (NM_001363185, intron 54 of 66) intron (NM_001363185, intron 54 of 66) -360293 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 344-21 chr1 107183702 107183913 + 2 NA intron (NM_001113226, intron 1 of 6) L2a|LINE|L2 35738 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 223-225 chr3 124810257 124810466 + 2 NA intron (NM_002213, intron 8 of 14) L1ME3A|LINE|L1 77004 NM_002213 3693 Hs.13155 NM_002213 ENSG00000082781 ITGB5 - integrin subunit beta 5 protein-coding 460-49 chr11 83858796 83859083 + 2 NA intron (NM_001142699, intron 16 of 27) THE1B|LTR|ERVL-MaLR -176514 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 548-43 chr11 119397647 119398097 + 2 NA intron (NR_034160, intron 2 of 3) L1MA5A|LINE|L1 16094 NR_034160 100499227 Hs.662365 NR_034160 USP2-AS1 THY1-AS1 USP2 antisense RNA 1 (head to head) ncRNA 226-177 chr2 120621214 120621407 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -114558 NM_001371271 529-21 chr10 123616103 123616427 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -50090 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 529-165 chr4 109179793 109180255 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 122634 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 288-327 chr5 46075159 46075422 + 2 NA Intergenic ALR/Alpha|Satellite|centr -378910 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 438-120 chr2 66107823 66108120 + 2 NA Intergenic Intergenic 250357 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 319-409 chr5 52578859 52579057 + 2 NA Intergenic LTR16B1|LTR|ERVL -208958 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 218-292 chr6 138059501 138059672 + 2 NA Intergenic (TTAA)n|Simple_repeat|Simple_repeat 47833 NM_022121 64065 Hs.201446 NM_022121 ENSG00000112378 PERP KCP1|KRTCAP1|PIGPC1|THW|dJ496H19.1 p53 apoptosis effector related to PMP22 protein-coding 331-516 chr8 30261283 30261597 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 105071 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 322-395 chr4 152223696 152223954 + 2 NA Intergenic LTR54B|LTR|ERV1 -113830 NR_104273 102191832 Hs.712524 NR_104273 ENSG00000270751 FBXW7-AS1 DEAR|DEspR FBXW7 antisense RNA 1 ncRNA 328-303 chr2 225758472 225758778 + 2 NA Intergenic Intergenic 357739 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 421-225 chr4 141925432 141925726 + 2 NA Intergenic AluY|SINE|Alu 288996 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 529-9 chr1 245072421 245072903 + 2 NA intron (NM_032328, intron 4 of 7) MSTB|LTR|ERVL-MaLR -82323 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 540-82 chr15 95102705 95103078 + 2 NA Intergenic L1MB7|LINE|L1 224209 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 256-314 chr5 27158307 27158475 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -119805 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 252-298 chr4 72438951 72439186 + 2 NA intron (NM_014243, intron 3 of 21) intron (NM_014243, intron 3 of 21) 130153 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 339-350 chr3 21086013 21086240 + 2 NA Intergenic LTR16C|LTR|ERVL -319600 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 305-31 chr1 157770805 157771096 + 2 NA intron (NM_001159488, intron 2 of 8) MLT1A0|LTR|ERVL-MaLR 6182 NM_030764 79368 Hs.437393 NM_030764 ENSG00000132704 FCRL2 CD307b|FCRH2|IFGP4|IRTA4|SPAP1|SPAP1A|SPAP1B|SPAP1C Fc receptor like 2 protein-coding 136-27 chr15 26812089 26812173 + 2 NA Intergenic L1MEg|LINE|L1 -38368 NM_021912 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 473-103 chr16 61162356 61162684 + 2 NA Intergenic Intergenic -106754 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 236-334 chr7 71361552 71361762 + 2 NA intron (NM_022479, intron 2 of 10) intron (NM_022479, intron 2 of 10) -53887 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 218-108 chr15 97669921 97670120 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -109322 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 413-9 chr1 71203482 71203770 + 2 NA intron (NR_046217, intron 2 of 3) intron (NR_046217, intron 2 of 3) 122302 NR_046217 100852410 Hs.535534 NR_046217 ENSG00000229956 ZRANB2-AS2 - ZRANB2 antisense RNA 2 (head to head) ncRNA 205-199 chr4 41716163 41716294 + 2 NA Intergenic Intergenic 32742 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 408-7 chr1 60571172 60571454 + 2 NA intron (NR_146508, intron 4 of 7) L2a|LINE|L2 51372 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 426-309 chr9 37362771 37363019 + 2 NA Intergenic Intergenic -59801 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 328-470 chr5 123663400 123663698 + 2 NA Intergenic Intergenic 118132 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 323-356 chr4 248646 248842 + 2 NA intron (NR_027481, intron 1 of 1) L1MA6|LINE|L1 36144 NR_027481 642280 Hs.673877 NM_001039758 ENSG00000198155 ZNF876P - zinc finger protein 876, pseudogene pseudo 369-139 chr15 93537784 93538124 + 2 NA Intergenic L1MC3|LINE|L1 -318606 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 138-27 chr16 10173892 10174002 + 2 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 8120 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 265-420 chrX 10147711 10147881 + 2 NA Intergenic L1M5|LINE|L1 -9149 NM_001256944 1183 Hs.495674 NM_001830 ENSG00000073464 CLCN4 CLC4|ClC-4|ClC-4A|MRX15|MRX49|MRXSRC chloride voltage-gated channel 4 protein-coding 698-87 chr8 136920003 136920508 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 389457 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 221-149 chr2 126735193 126735383 + 2 NA Intergenic Intergenic 79130 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 280-210 chr2 128916029 128916194 + 2 NA Intergenic L1M4|LINE|L1 51511 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 318-506 chr7 48277804 48278071 + 2 NA intron (NM_152701, intron 17 of 61) intron (NM_152701, intron 17 of 61) 106479 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 330-178 chr15 93955522 93955815 + 2 NA intron (NR_120320, intron 6 of 8) MIR|SINE|MIR 54967 NR_120323 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 427-54 chr12 65705533 65705824 + 2 NA Intergenic L1MA5|LINE|L1 -63306 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 243-90 chr12 34587691 34587860 + 2 NA Intergenic ALR/Alpha|Satellite|centr 565279 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 196-115 chr2 22385787 22385922 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie -150625 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 315-392 chr5 113504921 113505189 + 2 NA Intergenic Charlie9|DNA|hAT-Charlie -8639 NM_022828 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 823-19 chr2 61583460 61583997 + 2 NA Intergenic AluSg|SINE|Alu -45372 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 299-471 chr8 134381052 134381302 + 2 NA Intergenic MIR|SINE|MIR -216894 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 242-122 chr15 95181743 95181946 + 2 NA Intergenic AluSx4|SINE|Alu 145256 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 312-262 chr2 132413103 132413300 + 2 NA Intergenic Intergenic -3604 NM_001508 2863 Hs.432395 NM_001508 ENSG00000183840 GPR39 - G protein-coupled receptor 39 protein-coding 222-135 chr17 53041160 53041361 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat 55755 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 243-139 chr15 61178983 61179155 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 50233 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 370-389 chr6 40652918 40653185 + 2 NA Intergenic Intergenic -65687 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 298-323 chr4 56064474 56064706 + 2 NA Intergenic Intergenic -105605 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 544-183 chr5 113341051 113341452 + 2 NA intron (NM_001085377, intron 2 of 18) AluJb|SINE|Alu -46313 NM_002387 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 349-218 chr18 60324905 60325079 + 2 NA Intergenic L1MB1|LINE|L1 47783 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 456-286 chr6 135696278 135696607 + 2 NA intron (NR_152842, intron 5 of 5) MIRb|SINE|MIR -155259 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 141-85 chr8 117578089 117578226 + 2 NA Intergenic Intergenic 57444 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 427-141 chr21 23248403 23248627 + 2 NA Intergenic Intergenic 136320 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 284-192 chr2 40424375 40424643 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 5795 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 253-354 chr6 62731305 62731466 + 2 NA Intergenic Intergenic -445158 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 345-543 chr8 137540141 137540448 + 2 NA Intergenic Intergenic -126706 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 292-233 chr2 148412232 148412477 + 2 NA intron (NM_018328, intron 5 of 14) L1PA15|LINE|L1 -232397 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 467-298 chr9 69847723 69848098 + 2 NA intron (NM_001010940, intron 2 of 5) intron (NM_001010940, intron 2 of 5) 27093 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 235-49 chr10 83261401 83261582 + 2 NA Intergenic AluSx|SINE|Alu 415598 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 352-480 chr7 4192027 4192230 + 2 NA intron (NM_001079653, intron 9 of 19) intron (NM_001079653, intron 9 of 19) -57291 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 175-16 chr1 200206774 200206925 + 2 NA Intergenic Intergenic 164024 NM_001276464 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 528-103 chr16 61867470 61867892 + 2 NA intron (NM_001796, intron 3 of 11) intron (NM_001796, intron 3 of 11) 168757 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 287-25 chr1 168504120 168504356 + 2 NA Intergenic Intergenic -8594 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 236-338 chr7 119870905 119871105 + 2 NA intron (NR_131960, intron 1 of 4) intron (NR_131960, intron 1 of 4) 36370 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 341-207 chr18 29810360 29810620 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -488420 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 249-195 chr2 69502734 69502934 + 2 NA intron (NM_014911, intron 16 of 21) L1M5|LINE|L1 17337 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 261-404 chr9 12042932 12043102 + 2 NA Intergenic Intergenic -650368 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 380-242 chr3 30192763 30193038 + 2 NA Intergenic Intergenic -258744 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 447-221 chr5 132797571 132797978 + 2 NA Intergenic L2a|LINE|L2 -15528 NM_175873 134548 Hs.13308 NM_175873 ENSG00000198944 SOWAHA ANKRD43 sosondowah ankyrin repeat domain family member A protein-coding 382-101 chr14 23824035 23824352 + 2 NA Intergenic Intergenic -129577 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 266-432 chr8 117765726 117765898 + 2 NA Intergenic Intergenic 155101 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 388-197 chr21 22023348 22023592 + 2 NA intron (NR_109959, intron 4 of 5) intron (NR_109959, intron 4 of 5) 74989 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 343-532 chr8 46538233 46538421 + 2 NA Intergenic ALR/Alpha|Satellite|centr 79316 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 174-109 chr5 42290458 42290589 + 2 NA Intergenic Intergenic -115178 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 387-203 chr20 39547659 39547979 + 2 NA Intergenic Intergenic -323071 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 335-276 chr2 185497843 185498073 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack 240761 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 525-216 chr6 19681162 19681523 + 2 NA Intergenic L1MEd|LINE|L1 123417 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 179-83 chr4 57419550 57419701 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -6247 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 268-174 chr19 53633951 53634141 + 2 NA intron (NM_001012728, intron 1 of 2) intron (NM_001012728, intron 1 of 2) 1990 NM_001012728 503834 Hs.579941 NM_001012728 ENSG00000204595 DPRX - divergent-paired related homeobox protein-coding 374-167 chr19 52322828 52323168 + 2 NA 3' UTR (NM_001297624, exon 4 of 4) 3' UTR (NM_001297624, exon 4 of 4) -13245 NM_001161425 162963 Hs.147025 NM_173530 ENSG00000167554 ZNF610 - zinc finger protein 610 protein-coding 525-156 chr3 44588982 44589326 + 2 NA intron (NM_001351734, intron 2 of 6).2 intron (NM_001351734, intron 2 of 6).2 4190 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 442-77 chr14 62136939 62137296 + 2 NA intron (NR_104063, intron 1 of 1) intron (NR_104063, intron 1 of 1) 2856 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 394-86 chr12 60833863 60834178 + 2 NA Intergenic Intergenic 1144650 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 322-126 chr12 61102893 61103116 + 2 NA Intergenic L1M1|LINE|L1 1089835 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 496-148 chr2 166978886 166979242 + 2 NA intron (NM_152381, intron 2 of 10) L1M5|LINE|L1 90577 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 374-268 chr3 182952227 182952532 + 2 NA intron (NM_020640, intron 4 of 6) L2c|LINE|L2 28159 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 284-77 chr11 109380892 109381110 + 2 NA Intergenic Intergenic -41189 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 235-362 chr8 111070092 111070295 + 2 NA Intergenic Intergenic -42760 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 164-117 chr8 137127487 137127610 + 2 NA Intergenic Intergenic 286040 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 304-424 chr5 100485297 100485477 + 2 NA Intergenic Intergenic -49987 NM_198507 345757 Hs.356108 NM_198507 ENSG00000174132 FAM174A HGS_RE408|NS5ATP6|TMEM157|UNQ1912 family with sequence similarity 174 member A protein-coding 336-251 chr19 52802513 52802837 + 2 NA intron (NM_001369762, intron 2 of 2) AluSx1|SINE|Alu -15884 NM_198457 162966 Hs.696848 NM_198457 ENSG00000189190 ZNF600 KR-ZNF1 zinc finger protein 600 protein-coding 239-121 chr15 89563839 89563985 + 2 NA Intergenic L1MDa|LINE|L1 -11557 NM_152259 90381 Hs.441708 NM_152259 ENSG00000140534 TICRR C15orf42|SLD3|Treslin TOPBP1 interacting checkpoint and replication regulator protein-coding 512-248 chr6 163625074 163625415 + 2 NA Intergenic L1MC5a|LINE|L1 46240 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 314-382 chr3 102881926 102882174 + 2 NA Intergenic Intergenic 447035 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 302-330 chr4 87804852 87805071 + 2 NA intron (NM_004967, intron 4 of 6) intron (NM_004967, intron 4 of 6) 5407 NM_004967 3381 Hs.518726 NM_004967 ENSG00000029559 IBSP BNSP|BSP|BSP-II|SP-II integrin binding sialoprotein protein-coding 299-91 chr11 116377751 116377988 + 2 NA Intergenic MIRb|SINE|MIR -261553 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 229-68 chr11 93466220 93466400 + 2 NA Intergenic HAL1|LINE|L1 77081 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 257-246 chr21 19143853 19144106 + 2 NA Intergenic Intergenic -384167 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 231-111 chr15 101004205 101004374 + 2 NA intron (NM_024652, intron 6 of 33) intron (NM_024652, intron 6 of 33) 84932 NM_024652 79705 Hs.407918 NM_024652 ENSG00000154237 LRRK1 RIPK6|Roco1 leucine rich repeat kinase 1 protein-coding 391-64 chr11 101726735 101727025 + 2 NA Intergenic Intergenic -142873 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 366-96 chr12 26186008 26186235 + 2 NA Intergenic Intergenic -9215 NM_001135823 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 155-4 chr1 57895405 57895520 + 2 NA intron (NM_021080, intron 1 of 16) intron (NM_021080, intron 1 of 16) 34881 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 262-151 chr16 12262247 12262481 + 2 NA intron (NM_032167, intron 14 of 20) L1ME3G|LINE|L1 285630 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 261-239 chr3 69662236 69662444 + 2 NA Intergenic Intergenic -77124 NM_001354604 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 201-201 chr5 100689619 100689776 + 2 NA Intergenic Intergenic 126868 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 166-48 chr2 59707409 59707509 + 2 NA Intergenic L1ME3Cz|LINE|L1 489751 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 353-463 chr6 140635937 140636284 + 2 NA Intergenic Intergenic -47704 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 156-20 chr11 35099466 35099582 + 2 NA Intergenic Intergenic 38508 NR_120528 100507144 Hs.673491 NR_120528 ENSG00000255521 LOC100507144 - uncharacterized LOC100507144 ncRNA 792-18 chr12 133133472 133133975 + 2 NA intron (NM_015394, intron 1 of 4) intron (NM_015394, intron 1 of 4) 3096 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 255-116 chr14 81837557 81837765 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -94523 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 463-105 chr16 26752443 26752704 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -314354 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 365-151 chr17 33377231 33377471 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -84363 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 294-140 chr15 64286291 64286496 + 2 NA intron (NM_001329607, intron 2 of 11) intron (NM_001329607, intron 2 of 11) 69780 NM_001329605 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 678-55 chr2 106633043 106633558 + 2 NA Intergenic Intergenic 145936 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 319-396 chr5 6101913 6102120 + 2 NA Intergenic Intergenic 235276 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 294-263 chr20 52670160 52670354 + 2 NA Intergenic MER66B|LTR|ERV1 49419 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 639-6 chr1 172150983 172151434 + 2 NA intron (NR_146559, intron 15 of 20) intron (NR_146559, intron 15 of 20) -6373 NR_038397 100628315 Hs.584880 NR_038397 DNM3OS DNM3-AS1|MIR199A2HG DNM3 opposite strand/antisense RNA ncRNA 654-31 chr13 58120194 58120669 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -45396 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 492-81 chr14 24641593 24642036 + 2 NA Intergenic Intergenic -7624 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 367-42 chr10 30759195 30759502 + 2 NA Intergenic Intergenic 36129 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 358-219 chr2 79654946 79655205 + 2 NA intron (NM_001282598, intron 2 of 17) MER5C|DNA|hAT-Charlie -5716 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 379-370 chr9 2882971 2883184 + 2 NA Intergenic L1MA4|LINE|L1 -38982 NM_014878 9933 Hs.493309 NM_014878 ENSG00000080608 PUM3 HA-8|HLA-HA8|KIAA0020|PEN|PUF-A|PUF6|XTP5 pumilio RNA binding family member 3 protein-coding 506-64 chr12 18704939 18705331 + 2 NA intron (NM_033123, intron 7 of 14) intron (NM_033123, intron 7 of 14) 32374 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 817-21 chr19 27667993 27668596 + 2 NA Intergenic ALR/Alpha|Satellite|centr -125137 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 617-34 chr14 53784600 53785069 + 2 NA Intergenic L1MEf|LINE|L1 163650 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 302-73 chr11 50435774 50436017 + 2 NA Intergenic ALR/Alpha|Satellite|centr 26748 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 561-2 chr1 36882143 36882542 + 2 NA intron (NM_000831, intron 2 of 15) intron (NM_000831, intron 2 of 15) 152173 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 391-56 chr11 40494391 40494636 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -201383 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 206-41 chr10 103884250 103884381 + 2 NA intron (NM_024928, intron 9 of 9) MER112|DNA|hAT-Charlie -28909 NM_014631 9644 Hs.678727 NM_014631 ENSG00000107957 SH3PXD2A FISH|SH3MD1|TKS5 SH3 and PX domains 2A protein-coding 324-69 chr10 86431180 86431418 + 2 NA Intergenic AluJb|SINE|Alu -64504 NM_017551 2894 Hs.530653 NM_017551 ENSG00000182771 GRID1 GluD1 glutamate ionotropic receptor delta type subunit 1 protein-coding 135-37 chr2 170179352 170179419 + 2 NA intron (NM_001083615, intron 1 of 33) intron (NM_001083615, intron 1 of 33) 1238 NR_045684 140469 Hs.671900 NM_138995 ENSG00000071909 MYO3B - myosin IIIB protein-coding 171-30 chr14 28905707 28905821 + 2 NA Intergenic L1MA8|LINE|L1 -119977 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 316-263 chr2 66376534 66376803 + 2 NA Intergenic Intergenic -6638 NR_130931 729348 Hs.723595 NR_130931 ENSG00000232164 LINC01873 - long intergenic non-protein coding RNA 1873 ncRNA 388-117 chr15 97682031 97682326 + 2 NA Intergenic Intergenic -121480 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 395-227 chr3 110030944 110031257 + 2 NA Intergenic Intergenic 428272 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 377-75 chr11 101490989 101491227 + 2 NA intron (NM_004621, intron 3 of 12) intron (NM_004621, intron 3 of 12) 28797 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 295-352 chr4 92640559 92640799 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 336280 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 487-292 chr8 95440262 95440607 + 2 NA intron (NR_038207, intron 2 of 2) MIR|SINE|MIR -171233 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 273-184 chr18 12727776 12728005 + 2 NA Intergenic FLAM_C|SINE|Alu 21532 NR_110763 100996324 Hs.333275 NR_110763 LINC01882 - long intergenic non-protein coding RNA 1882 ncRNA 370-163 chr15 93021046 93021277 + 2 NA intron (NM_001271, intron 38 of 38) L1MEc|LINE|L1 51995 NM_001166286 56963 Hs.271277 NM_020211 ENSG00000182175 RGMA RGM repulsive guidance molecule BMP co-receptor a protein-coding 382-334 chr5 96100566 96100848 + 2 NA intron (NR_130776, intron 1 of 4) MER2B|DNA|TcMar-Tigger 21569 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 325-584 chrX 78897847 78898057 + 2 NA Intergenic L1PA15|LINE|L1 3297 NR_036258 100422932 NR_036258 ENSG00000283622 MIR4328 - microRNA 4328 ncRNA 272-289 chr3 189897998 189898176 + 2 NA TTS (NM_001114980) TTS (NM_001114980) 68165 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 252-78 chr11 113429444 113429607 + 2 NA intron (NM_016574, intron 1 of 6) AluY|SINE|Alu 20563 NR_036183 100422855 NR_036183 ENSG00000265140 MIR4301 - microRNA 4301 ncRNA 230-64 chr11 93187528 93187687 + 2 NA intron (NM_152313, intron 1 of 10) L1MC4|LINE|L1 9819 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 167-41 chr16 4633902 4633992 + 2 NA intron (NM_001142290, intron 1 of 16) AluYk4|SINE|Alu 9121 NM_015246 23295 Hs.526494 NM_015246 ENSG00000102858 MGRN1 RNF156 mahogunin ring finger 1 protein-coding 144-40 chr2 19475980 19476066 + 2 NA Intergenic Intergenic -117400 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 306-241 chr2 81698879 81699161 + 2 NA Intergenic L1ME3B|LINE|L1 -232074 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 780-45 chr4 72878285 72878839 + 2 NA Intergenic Intergenic 191154 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 391-238 chr3 124709517 124709841 + 2 NA intron (NM_007064, intron 24 of 26) HAL1|LINE|L1 -20687 NR_033434 7372 Hs.2057 NM_000373 ENSG00000114491 UMPS OPRT uridine monophosphate synthetase protein-coding 538-196 chr5 62940495 62940929 + 2 NA Intergenic Intergenic 361893 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 337-559 chr8 128939794 128939994 + 2 NA Intergenic Intergenic 26107 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 257-335 chr5 135677643 135677858 + 2 NA intron (NM_001349335, intron 3 of 10) L1MA4A|LINE|L1 -23815 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 442-9 chr1 98798273 98798572 + 2 NA Intergenic L1MA4|LINE|L1 136701 NM_152238 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 310-60 chr10 110765324 110765567 + 2 NA intron (NM_001134363, intron 1 of 13) intron (NM_001134363, intron 1 of 13) 105459 NR_026932 282997 Hs.599931 NR_026932 PDCD4-AS1 - PDCD4 antisense RNA 1 ncRNA 695-96 chr7 8541369 8541785 + 2 NA intron (NM_152745, intron 2 of 2) L1MEc|LINE|L1 107968 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 577-127 chr4 26826606 26827136 + 2 NA Intergenic Intergenic 33373 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 255-354 chr6 65106031 65106239 + 2 NA intron (NM_001292009, intron 12 of 43) intron (NM_001292009, intron 12 of 43) -195283 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 262-6 chr1 58194152 58194363 + 2 NA intron (NM_001353980, intron 1 of 5) MIRb|SINE|MIR 56246 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 293-419 chr7 145918776 145919064 + 2 NA Intergenic Intergenic -855351 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 339-549 chr7 144540797 144541106 + 2 NA intron (NR_146936, intron 10 of 11) intron (NR_146936, intron 10 of 11) -130724 NM_001080413 135935 Hs.558628 NM_001080413 ENSG00000106410 NOBOX OG-2|OG2|OG2X|POF5|TCAG_12042 NOBOX oogenesis homeobox protein-coding 236-8 chr1 60421118 60421312 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 201470 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 269-186 chr2 40136308 40136486 + 2 NA intron (NM_001351483, intron 8 of 8) intron (NM_001351483, intron 8 of 8) 218763 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 328-172 chr15 48952106 48952283 + 2 NA intron (NM_203349, intron 1 of 11) intron (NM_203349, intron 1 of 11) 11725 NM_203349 399694 Hs.642615 NM_203349 ENSG00000185634 SHC4 RaLP|SHCD SHC adaptor protein 4 protein-coding 370-362 chr5 9125955 9126266 + 2 NA intron (NM_003966, intron 13 of 22) intron (NM_003966, intron 13 of 22) -72215 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 398-350 chr8 76937633 76937961 + 2 NA Intergenic Intergenic 29053 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 119-17 chr15 93560502 93560575 + 2 NA Intergenic Intergenic -296022 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 448-118 chr2 125054534 125054927 + 2 NA Intergenic LTR40a|LTR|ERVL 1029443 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 350-33 chr1 219685104 219685417 + 2 NA Intergenic L1PB4|LINE|L1 -72115 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 296-156 chr15 61806358 61806520 + 2 NA Intergenic LTR24C|LTR|ERV1 76521 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 387-13 chr1 170252803 170253057 + 2 NA Intergenic MIRb|SINE|MIR 31278 NR_026957 284688 Hs.135668 NR_026957 ENSG00000224286 LINC01142 - long intergenic non-protein coding RNA 1142 ncRNA 369-431 chr8 138271020 138271316 + 2 NA intron (NM_015912, intron 3 of 19) MamGypLTR3a|LTR|Gypsy -187623 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 303-336 chr4 174510631 174510821 + 2 NA intron (NM_001256307, intron 2 of 5) intron (NM_001256307, intron 2 of 5) 11762 NM_001363574 3248 Hs.596913 NM_000860 ENSG00000164120 HPGD 15-PGDH|PGDH|PGDH1|PHOAR1|SDR36C1 15-hydroxyprostaglandin dehydrogenase protein-coding 275-394 chrX 47446511 47446701 + 2 NA 3' UTR (NM_007130, exon 5 of 5) 3' UTR (NM_007130, exon 5 of 5) 21063 NM_001324156 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 437-288 chr8 140251416 140251696 + 2 NA intron (NM_001160372, intron 16 of 22) intron (NM_001160372, intron 16 of 22) -151021 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 249-419 chr8 84755481 84755694 + 2 NA intron (NM_001287244, intron 1 of 7) intron (NM_001287244, intron 1 of 7) 49660 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 232-307 chr5 68228660 68228818 + 2 NA intron (NM_181523, intron 2 of 15) intron (NM_181523, intron 2 of 15) 12983 NM_181523 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 118-21 chr16 64299546 64299646 + 2 NA Intergenic Intergenic 822467 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 224-88 chr14 63001274 63001463 + 2 NA exon (NM_172375, exon 4 of 10) exon (NM_172375, exon 4 of 10) 44090 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 313-438 chr5 94655744 94655951 + 2 NA intron (NM_032290, intron 9 of 20) L1M2b|LINE|L1 37178 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 306-158 chr14 91033784 91034061 + 2 NA intron (NM_182398, intron 1 of 12) L1ME3B|LINE|L1 26202 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 1058-8 chr14 68160706 68161480 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 337501 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 469-162 chr21 21405704 21406147 + 2 NA intron (NM_001352592, intron 10 of 18) intron (NM_001352592, intron 10 of 18) 258763 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 206-11 chr1 98578897 98579082 + 2 NA Intergenic Intergenic -82732 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 301-209 chr2 82123281 82123518 + 2 NA Intergenic Intergenic -656453 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 415-175 chr3 61588629 61589039 + 2 NA intron (NM_002841, intron 1 of 29) intron (NM_002841, intron 1 of 29) 27263 NM_002841 5793 Hs.595541 NM_002841 ENSG00000144724 PTPRG HPTPG|PTPG|R-PTP-GAMMA|RPTPG protein tyrosine phosphatase receptor type G protein-coding 206-203 chr5 39007191 39007373 + 2 NA intron (NM_001285439, intron 3 of 38) MLT1B|LTR|ERVL-MaLR 67117 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 476-228 chr5 116710612 116711031 + 2 NA Intergenic Intergenic 51388 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 340-37 chr1 240601499 240601783 + 2 NA intron (NM_022469, intron 1 of 1) AluSx|SINE|Alu 10514 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 563-80 chr19 33740448 33740938 + 2 NA intron (NM_001127895, intron 3 of 4) L2c|LINE|L2 56165 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 457-110 chr2 34837881 34838295 + 2 NA Intergenic L1MA4|LINE|L1 160531 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 215-273 chr6 26618213 26618387 + 2 NA Intergenic L1MD|LINE|L1 21347 NM_013375 29777 Hs.254406 NM_013375 ENSG00000146109 ABT1 Esf2|hABT1 activator of basal transcription 1 protein-coding 165-131 chr8 100173965 100174087 + 2 NA intron (NM_003114, intron 3 of 18) intron (NM_003114, intron 3 of 18) 15691 NM_003114 6674 Hs.591866 NM_003114 ENSG00000104450 SPAG1 CILD28|CT140|HEL-S-268|HSD-3.8|SP75|TPIS sperm associated antigen 1 protein-coding 314-228 chr17 62838796 62838977 + 2 NA Intergenic L1MD1|LINE|L1 30384 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 244-337 chr7 13511687 13511904 + 2 NA Intergenic L1PA14|LINE|L1 474719 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 478-65 chr12 76843036 76843506 + 2 NA intron (NM_015336, intron 12 of 16) intron (NM_015336, intron 12 of 16) 35748 NM_001321 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 431-156 chr2 217064234 217064661 + 2 NA Intergenic Intergenic 193675 NR_130782 101928327 Hs.350698 NR_130782 ENSG00000223874 LINC01921 - long intergenic non-protein coding RNA 1921 ncRNA 263-199 chr2 75093024 75093179 + 2 NA intron (NM_015727, intron 2 of 3) intron (NM_015727, intron 2 of 3) 2289 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 345-457 chr6 33834954 33835279 + 2 NA Intergenic Intergenic -31113 NM_001040109 4295 Hs.2813 NM_002418 ENSG00000096395 MLN - motilin protein-coding 589-76 chr2 194715552 194715932 + 2 NA Intergenic MIRb|SINE|MIR -14853 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 368-171 chr16 9564135 9564371 + 2 NA Intergenic Intergenic -108748 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 239-409 chr8 92246186 92246333 + 2 NA Intergenic Intergenic -142874 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 414-41 chr11 24059301 24059644 + 2 NA Intergenic Intergenic -437581 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 672-76 chr3 193899238 193899747 + 2 NA Intergenic L2a|LINE|L2 -55483 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 337-48 chr10 47265914 47266178 + 2 NA Intergenic L1PA15|LINE|L1 -34151 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 409-245 chr5 36017026 36017400 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR -16191 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 336-20 chr1 66386739 66386935 + 2 NA Intergenic L1ME4a|LINE|L1 32302 NM_001297442 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 403-136 chr18 33864716 33864972 + 2 NA intron (NM_001353232, intron 9 of 9) THE1D|LTR|ERVL-MaLR 183768 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 268-14 chr1 112069466 112069660 + 2 NA Intergenic Intergenic 79027 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 262-38 chr10 9423454 9423644 + 2 NA Intergenic MER9a2|LTR|ERVK -127956 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 343-414 chr5 15751659 15751949 + 2 NA intron (NM_001278317, intron 2 of 3) Tigger19a|DNA|TcMar-Tigger -136802 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 384-132 chr16 22046363 22046619 + 2 NA intron (NM_001164579, intron 1 of 2) Tigger17a|DNA|TcMar-Tigger 38380 NM_001164579 730094 Hs.498890 NM_173501 ENSG00000185716 MOSMO ATTHOG|BC030336|C16orf52 modulator of smoothened protein-coding 249-96 chr12 108425014 108425162 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 48601 NR_120483 102723562 Hs.455693 NR_120483 ENSG00000247213 LINC01498 - long intergenic non-protein coding RNA 1498 ncRNA 489-36 chr10 99111725 99112184 + 2 NA intron (NM_021828, intron 3 of 11) L2b|LINE|L2 123921 NM_001166244 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 570-204 chr8 138059943 138060494 + 2 NA intron (NR_161374, intron 1 of 7) MLT1D|LTR|ERVL-MaLR 23327 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 238-235 chr3 53208743 53208952 + 2 NA Intergenic LTR8A|LTR|ERV1 40144 NM_001354678 5580 Hs.155342 NM_006254 ENSG00000163932 PRKCD ALPS3|CVID9|MAY1|PKCD|nPKC-delta protein kinase C delta protein-coding 582-150 chr8 57337789 57338220 + 2 NA Intergenic Intergenic -5783 NR_125818 101929488 Hs.407557 NR_125818 ENSG00000253871 LOC101929488 - uncharacterized LOC101929488 ncRNA 379-131 chr18 40318626 40318952 + 2 NA Intergenic Intergenic 252503 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 436-137 chr2 108223701 108224078 + 2 NA Intergenic MER61-int|LTR|ERV1 -6048 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 295-395 chr6 1305872 1306139 + 2 NA Intergenic FLAM_A|SINE|Alu -6093 NM_033260 94234 Hs.591352 NM_033260 ENSG00000164379 FOXQ1 HFH1 forkhead box Q1 protein-coding 243-482 chr9 111552040 111552220 + 2 NA 3' UTR (NM_133464, exon 6 of 6) 3' UTR (NM_133464, exon 6 of 6) 26951 NM_001007169 158399 Hs.584864 NM_133464 ENSG00000173258 ZNF483 ZKSCAN16|ZSCAN48 zinc finger protein 483 protein-coding 226-340 chr8 68444713 68444866 + 2 NA intron (NR_146187, intron 2 of 13) intron (NR_146187, intron 2 of 13) -113298 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 348-134 chr14 43858910 43859130 + 2 NA Intergenic Intergenic 648263 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 254-172 chr19 9240638 9240853 + 2 NA Intergenic L1MB5|LINE|L1 -10299 NM_001079935 26648 Hs.129832 NM_001079935 ENSG00000237521 OR7E24 HSHT2|OR19-8|OR7E24P|OR7E24Q olfactory receptor family 7 subfamily E member 24 protein-coding 139-14 chr11 14732814 14732901 + 2 NA intron (NM_000922, intron 1 of 15) MER8|DNA|TcMar-Tigger 89053 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 192-164 chr5 78577879 78578058 + 2 NA intron (NM_005779, intron 2 of 4) intron (NM_005779, intron 2 of 4) 70804 NM_005779 10184 Hs.79299 NM_005779 ENSG00000145685 LHFPL2 - LHFPL tetraspan subfamily member 2 protein-coding 329-428 chr4 163076549 163076823 + 2 NA Intergenic L1ME3A|LINE|L1 16942 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 130-11 chr10 86558542 86558616 + 2 NA Intergenic L1ME4c|LINE|L1 -36787 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 253-56 chr10 75314893 75315040 + 2 NA intron (NR_038226, intron 2 of 3) L1M1|LINE|L1 18583 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 297-476 chr8 93139693 93139957 + 2 NA intron (NR_161372, intron 1 of 2) intron (NR_161372, intron 1 of 2) 27025 NR_161372 389676 Hs.386711 NR_161372 C8orf87 - chromosome 8 open reading frame 87 ncRNA 242-244 chr3 108802341 108802550 + 2 NA Intergenic L1MA4|LINE|L1 -20341 NM_001317747 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 635-24 chr13 84168173 84168595 + 2 NA intron (NR_046871, intron 1 of 6) L1P4e|LINE|L1 27782 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 427-53 chr12 65381660 65381987 + 2 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 102836 NM_001193461 253827 Hs.339024 NM_198080 ENSG00000174099 MSRB3 DFNB74 methionine sulfoxide reductase B3 protein-coding 223-74 chr13 53801914 53802135 + 2 NA Intergenic Intergenic -13395 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 313-533 chr8 106078065 106078247 + 2 NA Intergenic Intergenic -17653 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 468-209 chr3 146386725 146387035 + 2 NA Intergenic Intergenic 82421 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 504-199 chr4 114702681 114703076 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 46119 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 420-160 chr2 213384641 213385030 + 2 NA intron (NR_047660, intron 8 of 14) ERV3-16A3_I-int|LTR|ERVL 100371 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 372-426 chr6 39961660 39961950 + 2 NA Intergenic MamRep1151|LTR?|LTR? -27343 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 743-68 chr5 94297432 94297951 + 2 NA intron (NM_001145678, intron 20 of 20) AluSx1|SINE|Alu -185992 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 356-366 chr4 85535612 85535904 + 2 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 60608 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 375-225 chr2 167670006 167670234 + 2 NA Intergenic L1M3c|LINE|L1 -148552 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 372-33 chr1 227355015 227355357 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -36694 NM_001366019 8476 Hs.35433 NM_003607 ENSG00000143776 CDC42BPA MRCK|MRCKA|PK428 CDC42 binding protein kinase alpha protein-coding 312-37 chr10 33107530 33107738 + 2 NA intron (NR_160030, intron 1 of 2) MIR|SINE|MIR 9173 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 253-361 chr6 92531362 92531578 + 2 NA Intergenic L1MA6|LINE|L1 -841042 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 594-9 chr1 170775526 170776007 + 2 NA Intergenic Intergenic 111635 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 483-144 chr20 56961296 56961670 + 2 NA Intergenic AluJo|SINE|Alu -252213 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 381-307 chr5 41129965 41130313 + 2 NA Intergenic Intergenic -58797 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 503-118 chr16 76201197 76201649 + 2 NA Intergenic Intergenic -75978 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 391-77 chr12 87611490 87611748 + 2 NA Intergenic Intergenic -157193 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 380-405 chr8 120333907 120334154 + 2 NA intron (NM_021110, intron 42 of 47) MLT1D|LTR|ERVL-MaLR 111120 NM_014078 28998 Hs.333823 NM_014078 ENSG00000172172 MRPL13 L13|L13A|L13mt|RPL13|RPML13 mitochondrial ribosomal protein L13 protein-coding 333-535 chr7 43418015 43418210 + 2 NA intron (NM_001287059, intron 7 of 27) MLT1C|LTR|ERVL-MaLR 104430 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 370-339 chr4 52254280 52254516 + 2 NA Intergenic Intergenic 203094 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 280-274 chr4 16473617 16473795 + 2 NA Intergenic L1MEc|LINE|L1 247043 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 298-492 chr9 30563231 30563507 + 2 NA Intergenic Intergenic -154915 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 310-505 chr8 43669722 43670002 + 2 NA Intergenic ALR/Alpha|Satellite|centr 377420 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 555-154 chr4 154222650 154223045 + 2 NA Intergenic L1MEg|LINE|L1 268952 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 343-147 chr14 72622128 72622402 + 2 NA intron (NM_001280542, intron 9 of 10) L2|LINE|L2 105445 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 309-360 chr3 115910306 115910578 + 2 NA intron (NM_001318915, intron 3 of 8) intron (NM_001318915, intron 3 of 8) -5316 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 434-167 chr21 29973631 29973946 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -33736 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 294-359 chr5 8562040 8562274 + 2 NA Intergenic Intergenic 101232 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 444-16 chr1 188212256 188212578 + 2 NA Intergenic L1MA4|LINE|L1 768789 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 294-89 chr12 100420984 100421158 + 2 NA 3' UTR (NM_139319, exon 12 of 12) 3' UTR (NM_139319, exon 12 of 12) -52795 NR_135146 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 293-155 chr17 65426114 65426361 + 2 NA Intergenic L3|LINE|CR1 -31304 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 397-41 chr10 107454342 107454594 + 2 NA Intergenic Intergenic -289762 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 793-9 chr11 115829596 115830290 + 2 NA Intergenic L1MD2|LINE|L1 -69743 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 318-132 chr12 19850771 19851044 + 2 NA Intergenic Intergenic -163778 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 383-20 chr1 178190692 178190924 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 96704 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 196-262 chr8 131581557 131581734 + 2 NA Intergenic Charlie13b|DNA|hAT-Charlie -322448 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 500-329 chrX 94886563 94886910 + 2 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat 176490 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 365-262 chr3 90545739 90545986 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1438241 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 377-172 chr18 55201129 55201481 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -76999 NR_110743 101927229 Hs.638474 NR_110743 ENSG00000267013 LINC01929 - long intergenic non-protein coding RNA 1929 ncRNA 209-245 chr5 13183066 13183233 + 2 NA Intergenic Intergenic -150263 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 213-45 chr10 89192619 89192780 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 14618 NM_003956 9023 Hs.47357 NM_003956 ENSG00000138135 CH25H C25H cholesterol 25-hydroxylase protein-coding 486-272 chr7 26885392 26885787 + 2 NA Intergenic L1M1|LINE|L1 -20999 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 502-229 chr5 152739197 152739639 + 2 NA intron (NR_109877, intron 3 of 4) L1MA9|LINE|L1 232931 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 275-53 chr10 116224401 116224615 + 2 NA intron (NM_005264, intron 4 of 10) L1MB8|LINE|L1 -29719 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 422-150 chr2 103939004 103939312 + 2 NA Intergenic L1M2|LINE|L1 469174 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 549-183 chr6 108939509 108939872 + 2 NA intron (NM_001286609, intron 11 of 16) MSTA|LTR|ERVL-MaLR -15587 NR_104137 101929716 NR_104137 ARMC2-AS1 - ARMC2 antisense RNA 1 ncRNA 279-30 chr10 25411260 25411481 + 2 NA intron (NM_020752, intron 3 of 10) intron (NM_020752, intron 3 of 10) -235094 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 301-223 chr2 126486347 126486512 + 2 NA Intergenic L1MEg|LINE|L1 -169506 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 487-142 chr2 60378056 60378367 + 2 NA intron (NR_132991, intron 2 of 3) intron (NR_132991, intron 2 of 3) 4825 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 276-320 chr4 11663665 11663937 + 2 NA Intergenic Intergenic 105667 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 636-78 chr2 100197005 100197624 + 2 NA Intergenic Intergenic -10940 NR_103730 150577 Hs.434127 NM_001102655 ENSG00000232084 LINC01104 - long intergenic non-protein coding RNA 1104 ncRNA 619-93 chr4 121409466 121409908 + 2 NA Intergenic L1PB1|LINE|L1 -28669 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 699-92 chr6 52227944 52228345 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 16356 NM_052872 112744 Hs.272295 NM_052872 ENSG00000112116 IL17F CANDF6|IL-17F|ML-1|ML1 interleukin 17F protein-coding 352-54 chr10 83472332 83472607 + 2 NA Intergenic L1MC3|LINE|L1 204620 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 149-13 chr10 18869173 18869262 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -179584 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 235-101 chr14 52197933 52198111 + 2 NA Intergenic L1MC2|LINE|L1 -69676 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 285-175 chr19 36585712 36585867 + 2 NA intron (NR_027239, intron 2 of 2) intron (NR_027239, intron 2 of 2) -12497 NM_020951 57711 Hs.654960 NM_020951 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 255-426 chr8 87072354 87072569 + 2 NA intron (NM_173538, intron 4 of 10) L1PA10|LINE|L1 206046 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 307-68 chr10 93160749 93160905 + 2 NA Intergenic Intergenic 86934 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 131-75 chr8 78606317 78606388 + 2 NA Intergenic Intergenic -47849 NR_125389 101927003 Hs.614849 NR_125389 ENSG00000254266 PKIA-AS1 - PKIA antisense RNA 1 ncRNA 310-4 chr1 58296909 58297085 + 2 NA Intergenic Intergenic -46450 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 408-59 chr11 28734944 28735330 + 2 NA Intergenic Intergenic -257589 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 207-81 chr14 56109447 56109594 + 2 NA Intergenic L1ME4b|LINE|L1 -8891 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 341-348 chr3 145064025 145064315 + 2 NA Intergenic L2a|LINE|L2 1005015 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 293-276 chr3 135006509 135006710 + 2 NA intron (NM_004441, intron 3 of 15) FLAM_A|SINE|Alu 211349 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 417-186 chr3 168958086 168958388 + 2 NA Intergenic L1MC1|LINE|L1 56292 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 381-198 chr2 103944672 103944909 + 2 NA Intergenic L1MDa|LINE|L1 463542 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 460-258 chr6 55704994 55705318 + 2 NA Intergenic MER21C|LTR|ERVL -125942 NM_001042406 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 786-38 chr22 28067239 28067840 + 2 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -146927 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 175-35 chr11 65351055 65351183 + 2 NA intron (NM_001330308, intron 11 of 11) intron (NM_001330308, intron 11 of 11) -3632 NM_145719 220359 Hs.632121 NM_145719 ENSG00000173825 TIGD3 - tigger transposable element derived 3 protein-coding 414-88 chr14 78505547 78505893 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 102001 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 240-128 chr13 100622058 100622288 + 2 NA intron (NM_001079669, intron 14 of 17) intron (NM_001079669, intron 14 of 17) -33381 NM_001195087 87769 Hs.350868 NM_033110 ENSG00000134864 GGACT A2LD1 gamma-glutamylamine cyclotransferase protein-coding 357-191 chr2 40796929 40797233 + 2 NA Intergenic Intergenic -284646 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 191-139 chr3 108966771 108966894 + 2 NA intron (NM_014429, intron 26 of 27) L2c|LINE|L2 -12953 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 312-347 chr3 148935937 148936209 + 2 NA Intergenic L2a|LINE|L2 -55335 NM_001184720 2992 Hs.477892 NM_004130 ENSG00000163754 GYG1 GSD15|GYG glycogenin 1 protein-coding 438-260 chr7 55847765 55848028 + 2 NA intron (NM_207366, intron 2 of 9) intron (NM_207366, intron 2 of 9) 14856 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 440-95 chr18 2056856 2057079 + 2 NA Intergenic LTR34|LTR|ERV1 514538 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 384-213 chr22 34450099 34450428 + 2 NA Intergenic Intergenic -527375 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 264-292 chr4 72914940 72915189 + 2 NA Intergenic Intergenic 154652 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 130-84 chr8 65172664 65172775 + 2 NA intron (NR_038901, intron 2 of 3) intron (NR_038901, intron 2 of 3) 7621 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 365-13 chr1 102510808 102511074 + 2 NA Intergenic L1M2|LINE|L1 -513707 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 209-235 chr4 126302249 126302428 + 2 NA Intergenic Intergenic 795079 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 437-267 chr8 53361990 53362301 + 2 NA Intergenic Intergenic -110448 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 558-162 chr4 129073050 129073510 + 2 NA intron (NM_001300898, intron 2 of 5) L1PB1|LINE|L1 20259 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 391-125 chr16 27862207 27862402 + 2 NA intron (NM_001323901, intron 2 of 5) MLT1E1A|LTR|ERVL-MaLR 25853 NM_144675 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 309-159 chr14 72056961 72057170 + 2 NA intron (NM_001370288, intron 2 of 16) AluSx1|SINE|Alu 123538 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 348-362 chr4 64976316 64976538 + 2 NA intron (NR_033976, intron 2 of 6) CR1-12_AMi|LINE|CR1 28073 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 353-274 chr20 5405575 5405811 + 2 NA Intergenic Intergenic 40055 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 306-365 chr4 108723402 108723581 + 2 NA Intergenic MER34-int|LTR|ERV1 39562 NM_031279 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 289-440 chr7 66265446 66265714 + 2 NA intron (NM_003596, intron 2 of 5) L1M4|LINE|L1 60246 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 177-31 chr11 47530034 47530190 + 2 NA intron (NM_006560, intron 1 of 13) Eulor9A|DNA|DNA -5408 NM_001330272 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 379-59 chr11 84796351 84796567 + 2 NA intron (NM_001351274, intron 5 of 26) L1MA2|LINE|L1 -75517 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 350-229 chr2 98655142 98655436 + 2 NA intron (NM_001160154, intron 5 of 12) intron (NM_001160154, intron 5 of 12) 8184 NM_001160154 11320 Hs.177576 NM_012214 ENSG00000071073 MGAT4A GNT-IV|GNT-IVA|GnT-4a alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A protein-coding 421-46 chr11 111008093 111008403 + 2 NA Intergenic Intergenic 89070 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 228-299 chr6 137870019 137870235 + 2 NA intron (NM_001270508, intron 1 of 8) intron (NM_001270508, intron 1 of 8) -1894 NR_049793 100130476 Hs.598050 NR_049793 ENSG00000237499 WAKMAR2 lnc-TNFAIP3 wound and keratinocyte migration associated lncRNA 2 ncRNA 426-313 chr9 84740828 84741210 + 2 NA intron (NM_001369534, intron 9 of 16) intron (NM_001369534, intron 9 of 16) 35118 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 636-77 chr2 82247177 82247563 + 2 NA Intergenic Intergenic -609433 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 318-222 chr18 56097237 56097545 + 2 NA intron (NR_040026, intron 5 of 8) MIRb|SINE|MIR 40145 NR_040026 100505474 Hs.662191 NR_040025 ENSG00000267712 LINC01539 - long intergenic non-protein coding RNA 1539 ncRNA 178-142 chr8 47493813 47493950 + 2 NA intron (NM_001352958, intron 10 of 21) intron (NM_001352958, intron 10 of 21) -160207 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 138-70 chr5 71856902 71857026 + 2 NA Intergenic L1MEc|LINE|L1 137689 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 248-87 chr12 61680226 61680459 + 2 NA Intergenic Intergenic 512497 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 284-33 chr10 50510257 50510431 + 2 NA intron (NM_147156, intron 3 of 10) L1ME1|LINE|L1 113612 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 217-63 chr11 27226634 27226803 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -6605 NR_125767 103695435 Hs.196133 NR_125766 ENSG00000254560 BBOX1-AS1 - BBOX1 antisense RNA 1 ncRNA 306-443 chr6 129207510 129207733 + 2 NA intron (NM_000426, intron 12 of 64) intron (NM_000426, intron 12 of 64) 324480 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 405-163 chr2 164182060 164182425 + 2 NA Intergenic Intergenic 386253 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 147-5 chr10 28811301 28811377 + 2 NA Intergenic Intergenic -15289 NR_038376 100507605 Hs.119207 NR_038374 ENSG00000235824 LINC00837 - long intergenic non-protein coding RNA 837 ncRNA 332-2 chr1 12741548 12741851 + 2 NA Intergenic AluSx3|SINE|Alu -4501 NM_152290 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 445-33 chr11 29116870 29117239 + 2 NA Intergenic Intergenic -477359 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 284-454 chrX 75192499 75192660 + 2 NA intron (NM_001363821, intron 3 of 9) L1PA13|LINE|L1 36210 NM_001363821 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 380-244 chr3 53961449 53961705 + 2 NA Intergenic Intergenic -69718 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 260-46 chr10 44755796 44755960 + 2 NA Intergenic LTR75|LTR|ERVL -155438 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 633-101 chr5 161802755 161803360 + 2 NA Intergenic Intergenic -44134 NM_000806 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 373-183 chr2 20017862 20018084 + 2 NA Intergenic Intergenic -5305 NM_002381 4148 Hs.656199 NM_002381 ENSG00000132031 MATN3 DIPOA|EDM5|HOA|OADIP|OS2 matrilin 3 protein-coding 390-158 chr18 66399282 66399486 + 2 NA Intergenic Intergenic 204706 NM_021153 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 296-247 chr2 166143767 166143993 + 2 NA intron (NR_110260, intron 2 of 11) intron (NR_110260, intron 2 of 11) 5281 NM_001202435 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 451-53 chr13 65858476 65858875 + 2 NA Intergenic Intergenic -7372 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 333-409 chr4 124591081 124591372 + 2 NA Intergenic Intergenic -32792 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 333-533 chr7 33141636 33141888 + 2 NA intron (NM_001348044, intron 1 of 18) intron (NM_001348044, intron 1 of 18) 12198 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 348-483 chr7 11467681 11467994 + 2 NA intron (NM_015204, intron 9 of 26) intron (NM_015204, intron 9 of 26) 364361 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 656-59 chr2 81296308 81296888 + 2 NA Intergenic MER77B|LTR|ERVL 170348 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 355-407 chr5 105761306 105761542 + 2 NA Intergenic MER66-int|LTR|ERV1 661950 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 307-222 chr2 13435594 13435871 + 2 NA Intergenic Intergenic -428719 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 265-56 chr11 15254822 15254982 + 2 NA Intergenic MIR3|SINE|MIR 105800 NM_001278316 387755 Hs.591997 NM_001031853 ENSG00000188487 INSC - INSC spindle orientation adaptor protein protein-coding 252-323 chr5 26269114 26269251 + 2 NA Intergenic L1ME3|LINE|L1 769404 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 369-327 chr5 68799338 68799565 + 2 NA Intergenic Intergenic 230476 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 358-21 chr1 191930771 191931017 + 2 NA Intergenic L1MA1|LINE|L1 -227568 NM_130782 64407 Hs.440890 NM_130782 ENSG00000150681 RGS18 RGS13 regulator of G protein signaling 18 protein-coding 305-7 chr1 59475742 59475998 + 2 NA intron (NM_001350794, intron 6 of 14) L2a|LINE|L2 -39760 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 379-287 chr6 47894182 47894436 + 2 NA intron (NM_001013732, intron 2 of 2) intron (NM_001013732, intron 2 of 2) 107241 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 369-310 chr5 6116349 6116670 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger 220783 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 345-235 chr19 30349853 30350111 + 2 NA Intergenic Intergenic -22402 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 345-265 chr2 83762649 83762938 + 2 NA Intergenic MLT2A2|LTR|ERVL 239979 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 334-456 chr6 41215298 41215561 + 2 NA intron (NR_027256, intron 3 of 4) L1MEh|LINE|L1 2518 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 289-52 chr10 34054681 34054930 + 2 NA Intergenic Intergenic -282125 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 236-250 chr4 35732733 35732883 + 2 NA Intergenic L2|LINE|L2 511131 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 284-197 chr2 65323328 65323564 + 2 NA intron (NM_001128210, intron 4 of 5) intron (NM_001128210, intron 4 of 5) 43332 NM_001128210 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 556-55 chr12 94814438 94814917 + 2 NA Intergenic Intergenic -19721 NR_030171 574449 NR_030171 ENSG00000283998 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 347-122 chr14 42872300 42872535 + 2 NA Intergenic L1M4|LINE|L1 1265561 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 344-202 chr18 24680818 24681022 + 2 NA Intergenic Intergenic -44861 NR_134604 105372028 Hs.569901 NR_134604 ENSG00000266573 LOC105372028 - uncharacterized LOC105372028 ncRNA 266-456 chrX 26117815 26117978 + 2 NA Intergenic AluY|SINE|Alu -20447 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 261-173 chr2 22584430 22584613 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 48042 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 205-65 chr12 43306777 43306970 + 2 NA Intergenic MIR|SINE|MIR 151558 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 670-133 chr8 142304682 142305331 + 2 NA intron (NM_001366903, intron 9 of 9) intron (NM_001366903, intron 9 of 9) 98176 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 277-402 chr8 46060575 46060756 + 2 NA Intergenic ALR/Alpha|Satellite|centr 556978 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 248-251 chr3 114936493 114936661 + 2 NA intron (NM_001348805, intron 3 of 10) intron (NM_001348805, intron 3 of 10) -35952 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 332-476 chr7 34741196 34741452 + 2 NA intron (NR_015356, intron 2 of 4) L1M4|LINE|L1 16948 NR_033665 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 133-51 chr3 141041248 141041356 + 2 NA Intergenic L1MEc|LINE|L1 -10045 NM_080862 92369 Hs.655112 NM_080862 ENSG00000175093 SPSB4 SSB-4|SSB4 splA/ryanodine receptor domain and SOCS box containing 4 protein-coding 626-29 chr11 115989087 115989466 + 2 NA Intergenic Intergenic -229076 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 911-11 chr19 31509114 31509931 + 2 NA Intergenic AluSx1|SINE|Alu -78667 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 491-14 chr10 43582771 43583204 + 2 NA Intergenic L1MA4|LINE|L1 -8369 NM_001099284 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 297-27 chr1 171343085 171343331 + 2 NA Intergenic LTR33|LTR|ERVL 4312 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 212-190 chr20 60044187 60044341 + 2 NA Intergenic L1M2|LINE|L1 -11661 NR_161292 284756 Hs.335319 NR_126504 ENSG00000176659 C20orf197 - chromosome 20 open reading frame 197 ncRNA 433-227 chr5 97881374 97881782 + 2 NA intron (NR_146299, intron 2 of 2) intron (NR_146299, intron 2 of 2) 40820 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 228-314 chr7 37460610 37460782 + 2 NA Intergenic Intergenic -11370 NM_001206480 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 229-55 chr11 13800601 13800774 + 2 NA intron (NR_149108, intron 3 of 3) L1PA5|LINE|L1 16301 NR_149108 105376562 Hs.577257 NR_149108 ENSG00000255411 LINC02548 - long intergenic non-protein coding RNA 2548 ncRNA 340-219 chr18 67592935 67593123 + 2 NA intron (NR_033921, intron 1 of 4) intron (NR_033921, intron 1 of 4) -76309 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 259-431 chr9 79248376 79248548 + 2 NA Intergenic L1MC2|LINE|L1 -102796 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 355-50 chr10 51894343 51894557 + 2 NA intron (NM_001098512, intron 4 of 17) L1MB3|LINE|L1 -194855 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 379-35 chr1 242113781 242114030 + 2 NA exon (NM_001195811, exon 7 of 10) exon (NM_001195811, exon 7 of 10) -114807 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 340-297 chr2 213018282 213018473 + 2 NA intron (NM_001371274, intron 6 of 7) intron (NM_001371274, intron 6 of 7) -92041 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 389-310 chr6 23570240 23570516 + 2 NA Intergenic Intergenic -555837 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 298-244 chr2 197620129 197620369 + 2 NA intron (NM_144629, intron 5 of 8) intron (NM_144629, intron 5 of 8) 55338 NM_144629 130132 Hs.591615 NM_144629 ENSG00000162944 RFTN2 C2orf11|Raftlin-2 raftlin family member 2 protein-coding 246-330 chr5 97326691 97326871 + 2 NA Intergenic Intergenic -143534 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 381-289 chr4 185217146 185217392 + 2 NA intron (NM_001317781, intron 1 of 18) FLAM_C|SINE|Alu 13032 NM_001317781 83891 Hs.369091 NM_031953 ENSG00000109762 SNX25 MSTP043|SBBI31 sorting nexin 25 protein-coding 179-72 chr3 118998978 118999077 + 2 NA intron (NM_001353319, intron 1 of 7) intron (NM_001353319, intron 1 of 7) 35819 NM_001015887 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 157-83 chr3 70377011 70377161 + 2 NA Intergenic Intergenic -64448 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 334-586 chrX 72459436 72459674 + 2 NA intron (NR_051952, intron 8 of 9) L2c|LINE|L2 113288 NM_001166418 55869 Hs.310536 NM_018486 ENSG00000147099 HDAC8 CDA07|CDLS5|HD8|HDACL1|KDAC8|MRXS6|RPD3|WTS histone deacetylase 8 protein-coding 446-327 chr9 28227700 28228007 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 491452 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 318-551 chr8 122242170 122242365 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 326377 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 560-95 chr20 16376560 16376900 + 2 NA intron (NM_001199866, intron 19 of 22) intron (NM_001199866, intron 19 of 22) 196718 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 154-25 chr12 66391118 66391225 + 2 NA intron (NM_001366722, intron 19 of 24) intron (NM_001366722, intron 19 of 24) 88626 NR_135081 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 290-273 chr3 27807869 27808120 + 2 NA intron (NR_146630, intron 2 of 4) intron (NR_146630, intron 2 of 4) 10406 NR_146630 105377007 NR_146630 LINC01980 - long intergenic non-protein coding RNA 1980 ncRNA 320-84 chr11 50477267 50477519 + 2 NA Intergenic ALR/Alpha|Satellite|centr 68246 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 289-63 chr10 76287729 76287968 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 505087 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 263-186 chr2 16073482 16073724 + 2 NA intron (NR_126559, intron 2 of 3) intron (NR_126559, intron 2 of 3) 23176 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 437-2 chr1 33908695 33909097 + 2 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) 39940 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 399-91 chr14 68478714 68478946 + 2 NA TTS (NM_001321817) TTS (NM_001321817) 149957 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 222-229 chr3 30396166 30396380 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -122595 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 387-313 chr6 86286645 86286902 + 2 NA Intergenic Intergenic -608040 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 192-59 chr14 22693011 22693155 + 2 NA Intergenic L1PA16|LINE|L1 -58239 NM_001348233 79549 NM_001348233 ENSG00000255804 OR6J1 OR6J1P|OR6J2 olfactory receptor family 6 subfamily J member 1 (gene/pseudogene) protein-coding 456-169 chr2 179910427 179910756 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger -48979 NM_001352811 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 358-374 chr5 88603903 88604173 + 2 NA intron (NR_152235, intron 2 of 3) MIR3|SINE|MIR 62901 NR_030741 407047 NR_030741 ENSG00000284447 MIR9-2 MIRN9-2|hsa-mir-9-2|miRNA9-2|mir-9-2 microRNA 9-2 ncRNA 239-81 chr12 114129568 114129690 + 2 NA Intergenic Intergenic 112141 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 204-312 chrX 49730360 49730507 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -34449 NM_003785 8712 Hs.128231 NM_003785 ENSG00000068985 PAGE1 AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1 PAGE family member 1 protein-coding 276-170 chr15 86941334 86941583 + 2 NA intron (NR_135683, intron 1 of 2) LTR41|LTR|ERVL 8578 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 179-57 chr20 39915657 39915750 + 2 NA Intergenic Intergenic -88758 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 283-336 chr4 121466035 121466277 + 2 NA Intergenic L1MC4a|LINE|L1 -85138 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 347-409 chr5 120202390 120202623 + 2 NA Intergenic Intergenic -261772 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 691 chr1 5014946 5015566 + 2 NA Intergenic Intergenic 360647 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 446-187 chr3 74848125 74848417 + 2 NA Intergenic Intergenic -327131 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 197-145 chr3 181723220 181723370 + 2 NA intron (NR_075091, intron 7 of 7) intron (NR_075091, intron 7 of 7) 11370 NM_003106 6657 Hs.518438 NM_003106 ENSG00000181449 SOX2 ANOP3|MCOPS3 SRY-box transcription factor 2 protein-coding 411-114 chr16 83560284 83560548 + 2 NA intron (NM_001220489, intron 6 of 12) L1MB1|LINE|L1 52070 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 509-19 chr10 13026030 13026399 + 2 NA intron (NM_001282658, intron 5 of 6) intron (NM_001282658, intron 5 of 6) -24501 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 294-209 chr2 50833041 50833274 + 2 NA intron (NM_001330093, intron 4 of 22) L1ME1|LINE|L1 -136895 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 387-265 chr4 180806115 180806313 + 2 NA Intergenic Intergenic 352935 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 343-411 chr5 7179168 7179410 + 2 NA Intergenic Intergenic 90065 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 510-202 chr4 41717408 41717751 + 2 NA Intergenic Intergenic 31391 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 350 chr1 54643275 54643506 + 2 NA intron (NM_001291332, intron 1 of 21) L2b|LINE|L2 1604 NM_001039464 374977 Hs.412482 NM_198547 ENSG00000184313 MROH7 C1orf175|HEATR8 maestro heat like repeat family member 7 protein-coding 272-127 chr14 98884457 98884633 + 2 NA Intergenic Intergenic 172932 NR_161369 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 216-165 chr2 49359001 49359172 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -204559 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 383-252 chr3 90558428 90558687 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1450936 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 574-189 chr8 128547150 128547652 + 2 NA intron (NR_121672, intron 2 of 7) L1ME3Cz|LINE|L1 17278 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 312-534 chr8 133844077 133844371 + 2 NA Intergenic Intergenic -42272 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 899-4 chr11 88155379 88156009 + 2 NA intron (NM_022337, intron 1 of 2) L1PA16|LINE|L1 19749 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 631-85 chr3 88720132 88720528 + 2 NA Intergenic Intergenic 381874 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 450-96 chr15 83047189 83047627 + 2 NA intron (NM_001011885, intron 3 of 6) L2a|LINE|L2 19844 NM_025238 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 178-163 chrX 97708559 97708707 + 2 NA Intergenic Intergenic -144098 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 273-304 chr3 162483514 162483772 + 2 NA Intergenic L1MB1|LINE|L1 819658 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 269-58 chr11 16378401 16378581 + 2 NA intron (NM_001367872, intron 3 of 16) intron (NM_001367872, intron 3 of 16) -21945 NM_001367873 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 778-28 chr16 6621709 6622262 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -151824 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 326-296 chr20 40640352 40640609 + 2 NA Intergenic MIRc|SINE|MIR 48756 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 344-503 chr8 126582928 126583150 + 2 NA Intergenic Intergenic -24561 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 527-217 chr5 148382090 148382421 + 2 NA intron (NR_105057, intron 1 of 4) Tigger15a|DNA|TcMar-Tigger 1595 NR_105057 102546294 Hs.660461 NR_105057 ENSG00000247199 LOC102546294 - uncharacterized LOC102546294 ncRNA 628-6 chr1 45110687 45111135 + 2 NA intron (NM_020883, intron 1 of 13) intron (NM_020883, intron 1 of 13) 95694 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 182-55 chr14 68158475 68158569 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 334930 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 363-207 chr2 50987648 50988003 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 44307 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 221-315 chr8 140012071 140012238 + 2 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 88381 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 225-38 chr10 66232583 66232714 + 2 NA intron (NM_001127384, intron 13 of 17) L1ME3A|LINE|L1 661223 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 200-86 chr15 92887703 92887891 + 2 NA intron (NR_037602, intron 3 of 4) intron (NR_037602, intron 3 of 4) 4501 NR_037602 100507217 Hs.622504 NR_037600 LINC01578 - long intergenic non-protein coding RNA 1578 ncRNA 320-97 chr11 104363691 104363936 + 2 NA Intergenic Intergenic -199666 NM_033135 80310 Hs.352298 NM_025208 ENSG00000170962 PDGFD IEGF|MSTP036|SCDGF-B|SCDGFB platelet derived growth factor D protein-coding 410-67 chr12 37821389 37821742 + 2 NA Intergenic ALR/Alpha|Satellite|centr -495209 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 315-254 chr2 123173303 123173589 + 2 NA Intergenic L1ME3A|LINE|L1 -99965 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 260-347 chr5 41147531 41147761 + 2 NA intron (NM_000065, intron 17 of 17) intron (NM_000065, intron 17 of 17) 65886 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 393-342 chr7 141111996 141112345 + 2 NA intron (NM_001195278, intron 1 of 3) intron (NM_001195278, intron 1 of 3) 38106 NM_001195278 100507421 Hs.283851 NM_001195278 ENSG00000261115 TMEM178B - transmembrane protein 178B protein-coding 265-178 chr2 63810416 63810577 + 2 NA Intergenic L2b|LINE|L2 -30468 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 361-301 chr3 121982223 121982470 + 2 NA Intergenic L1MB8|LINE|L1 39901 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 295-387 chr5 129302840 129303001 + 2 NA Intergenic L1PA8A|LINE|L1 94227 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 296-218 chr2 45685992 45686199 + 2 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 34420 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 378-168 chr17 11722561 11722928 + 2 NA intron (NM_001372, intron 27 of 68) intron (NM_001372, intron 27 of 68) 124274 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 527-274 chr8 135232725 135233025 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 -1256 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 351-438 chr7 30718078 30718311 + 2 NA Intergenic LTR5B|LTR|ERVK -18091 NM_001202481 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 505-112 chr17 3325028 3325510 + 2 NA Intergenic AluSx|SINE|Alu 15024 NR_024128 390756 Hs.632245 NM_001005334 ENSG00000180068 OR3A4P OLFRA05|OLFRA06|OR17-13|OR17-16|OR17-24|OR17-25|OR24|OR25|OR3A4|OR3A5P olfactory receptor family 3 subfamily A member 4 pseudogene pseudo 297-369 chr5 53925790 53926084 + 2 NA intron (NM_019087, intron 4 of 4) Charlie15a|DNA|hAT-Charlie 25662 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 247-144 chr16 31021268 31021433 + 2 NA Intergenic L1ME4b|LINE|L1 -10712 NM_052874 112755 Hs.542230 NM_052874 ENSG00000099365 STX1B GEFSP9|STX1B1|STX1B2 syntaxin 1B protein-coding 321-384 chr3 119286591 119286821 + 2 NA intron (NR_046574, intron 3 of 3) L1M2c|LINE|L1 -7677 NM_020754 57514 Hs.668218 NM_020754 ENSG00000031081 ARHGAP31 AOS1|CDGAP Rho GTPase activating protein 31 protein-coding 383-90 chr12 127624710 127625003 + 2 NA Intergenic MER4B|LTR|ERV1 11611 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 659-106 chr7 61955868 61956355 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1347945 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 254-302 chr5 26607363 26607541 + 2 NA Intergenic Intergenic 431134 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 372-485 chr8 83996298 83996584 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -186346 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 188-60 chr15 33664613 33664755 + 2 NA intron (NM_001243996, intron 36 of 102) MIRb|SINE|MIR -303813 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 385-158 chr19 41722417 41722621 + 2 NA intron (NM_001308398, intron 8 of 8) L1MB4|LINE|L1 13893 NM_001308398 1048 Hs.709196 NM_004363 ENSG00000105388 CEACAM5 CD66e|CEA carcinoembryonic antigen related cell adhesion molecule 5 protein-coding 393-202 chr21 20552446 20552783 + 2 NA Intergenic Intergenic 250494 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 188-139 chr3 146770195 146770344 + 2 NA Intergenic Intergenic -151654 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 301-61 chr11 39469945 39470130 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 821179 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 284-39 chr10 57156026 57156297 + 2 NA Intergenic L1ME1|LINE|L1 148398 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 265-329 chr6 14029013 14029204 + 2 NA Intergenic Intergenic -88148 NM_001251901 9308 Hs.595133 NM_004233 ENSG00000112149 CD83 BL11|HB15 CD83 molecule protein-coding 378-51 chr10 33494509 33494779 + 2 NA Intergenic Intergenic -159739 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 330-158 chr14 60593075 60593335 + 2 NA Intergenic AluJr|SINE|Alu -46011 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 256-434 chr8 128965512 128965718 + 2 NA intron (NR_145483, intron 1 of 3) intron (NR_145483, intron 1 of 3) 386 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 178-42 chr13 101962581 101962702 + 2 NA intron (NM_175929, intron 1 of 4) intron (NM_175929, intron 1 of 4) 5105 NR_039603 100616110 NR_039603 ENSG00000265164 MIR2681 - microRNA 2681 ncRNA 454-303 chr8 18155806 18156148 + 2 NA Intergenic L1M2|LINE|L1 -14490 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 319-94 chr11 84915004 84915172 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) 8333 NM_001300983 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 230-231 chr3 77749157 77749315 + 2 NA Intergenic LTR101_Mam|LTR|ERVL 299727 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 190-137 chr4 130369185 130369329 + 2 NA Intergenic Intergenic -7104 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 388-378 chrX 88533399 88533663 + 2 NA Intergenic LOR1-int|LTR|ERV1 -213694 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 472-3 chr1 40504866 40505213 + 2 NA Intergenic MER33|DNA|hAT-Charlie -3680 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 393-264 chr5 9605315 9605561 + 2 NA Intergenic L2|LINE|L2 24913 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 132-8 chr10 18074720 18074818 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -64207 NR_038419 100129213 Hs.568816 NR_038419 ENSG00000226083 SLC39A12-AS1 - SLC39A12 antisense RNA 1 ncRNA 718-39 chr19 27588480 27589106 + 2 NA Intergenic ALR/Alpha|Satellite|centr -204638 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 281-435 chr8 103566629 103566835 + 2 NA intron (NM_001348497, intron 1 of 22) intron (NM_001348497, intron 1 of 22) -64822 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 239-399 chr8 55577755 55577934 + 2 NA Intergenic Intergenic -56866 NR_134323 105375843 Hs.662416 NR_134323 ENSG00000254357 LOC105375843 - uncharacterized LOC105375843 ncRNA 426-14 chr1 210324534 210324917 + 2 NA Intergenic AluSx1|SINE|Alu -3527 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 211-331 chrX 10637674 10637830 + 2 NA intron (NM_033290, intron 1 of 9) intron (NM_033290, intron 1 of 9) -17167 NM_033289 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 254-57 chr11 56520349 56520550 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 22808 NM_001005245 219487 Hs.553632 NM_001005245 ENSG00000255223 OR5M11 OR11-199 olfactory receptor family 5 subfamily M member 11 protein-coding 395-264 chr5 23650059 23650421 + 2 NA Intergenic LTR16C|LTR|ERVL 142585 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 291-151 chr15 72076854 72077093 + 2 NA intron (NM_006901, intron 1 of 41) L1MC2|LINE|L1 -37285 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 543-140 chr2 208543782 208544271 + 2 NA intron (NR_136588, intron 1 of 5) intron (NR_136588, intron 1 of 5) 1384 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 190-59 chr14 85699652 85699784 + 2 NA Intergenic Intergenic 166369 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 257-427 chr8 133977998 133978188 + 2 NA Intergenic Intergenic 91597 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 524-129 chr2 232962783 232963098 + 2 NA intron (NM_019850, intron 3 of 14) L1MA8|LINE|L1 -34789 NM_001114090 25791 Hs.97316 NM_019850 ENSG00000066248 NGEF ARHGEF27|EPHEXIN neuronal guanine nucleotide exchange factor protein-coding 305-299 chr2 239854743 239854914 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 88266 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 283-398 chr6 94877467 94877747 + 2 NA Intergenic Intergenic 699844 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 652-21 chr10 91375965 91376534 + 2 NA intron (NR_024467, intron 3 of 4) L1MEc|LINE|L1 -32986 NM_001348365 143279 Hs.596096 NM_173497 ENSG00000165338 HECTD2 - HECT domain E3 ubiquitin protein ligase 2 protein-coding 935-15 chr15 98409119 98409753 + 2 NA intron (NR_146567, intron 1 of 2) intron (NR_146567, intron 1 of 2) 11562 NR_146567 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 325-334 chr3 3509620 3509898 + 2 NA Intergenic Intergenic -289672 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 289-372 chr5 73154384 73154593 + 2 NA Intergenic MIRc|SINE|MIR -3896 NR_134252 105379030 NR_134252 ENSG00000251599 LOC105379030 - uncharacterized LOC105379030 ncRNA 322-350 chr3 136278676 136278947 + 2 NA intron (NM_000532, intron 5 of 14) L1M4|LINE|L1 28471 NM_000532 5096 Hs.63788 NM_000532 ENSG00000114054 PCCB - propionyl-CoA carboxylase subunit beta protein-coding 240-145 chr14 89420095 89420241 + 2 NA TTS (NR_036500) TTS (NR_036500) 2814 NR_036500 400236 Hs.585207 NR_036500 ENSG00000258920 FOXN3-AS1 - FOXN3 antisense RNA 1 ncRNA 637-17 chr10 59555697 59556150 + 2 NA Intergenic AluY|SINE|Alu 153968 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 317-51 chr10 59535830 59536027 + 2 NA Intergenic L1MB8|LINE|L1 -172747 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 357-424 chr7 137780985 137781246 + 2 NA intron (NM_001321708, intron 1 of 32) LTR78|LTR|ERV1 65217 NM_001321709 9162 Hs.242947 NM_004717 ENSG00000157680 DGKI DGK-IOTA diacylglycerol kinase iota protein-coding 388-49 chr10 80364199 80364454 + 2 NA intron (NM_032372, intron 4 of 4) Charlie2b|DNA|hAT-Charlie 7545 NM_032372 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 565-153 chr6 39734498 39735002 + 2 NA Intergenic Charlie14a|DNA|hAT-Charlie -9327 NM_001351503 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 346-371 chr4 171389133 171389415 + 2 NA Intergenic Intergenic 203090 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 245-69 chr11 38180422 38180599 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 241909 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 262-150 chr15 96241741 96241909 + 2 NA intron (NR_125738, intron 2 of 4) L1MEj|LINE|L1 -84221 NM_001145155 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 231-41 chr10 104081745 104081968 + 2 NA intron (NM_000494, intron 1 of 55) ORSL|DNA|hAT-Tip100 4024 NM_000494 1308 Hs.117938 NM_000494 ENSG00000065618 COL17A1 BA16H23.2|BP180|BPA-2|BPAG2|ERED|LAD-1 collagen type XVII alpha 1 chain protein-coding 145-85 chr8 68759565 68759693 + 2 NA intron (NM_001349479, intron 9 of 11) intron (NM_001349479, intron 9 of 11) 344561 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 295-84 chr11 103656210 103656464 + 2 NA Intergenic L2a|LINE|L2 -193569 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 474-82 chr14 60417164 60417549 + 2 NA Intergenic Intergenic 68707 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 268-365 chr7 41226856 41227046 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger 125347 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 400-136 chr18 1405810 1406151 + 2 NA Intergenic L1ME3|LINE|L1 -46351 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 112-23 chr19 51844646 51844706 + 2 NA intron (NR_163433, intron 6 of 11) intron (NR_163433, intron 6 of 11) 43260 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 243-31 chr10 16273014 16273193 + 2 NA Intergenic Intergenic -163840 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 298-220 chr2 84069381 84069574 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -221205 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 295-331 chr4 54521237 54521469 + 2 NA Intergenic L1MC5|LINE|L1 85778 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 386-302 chr5 147548245 147548525 + 2 NA Intergenic L1MB7|LINE|L1 -11609 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 356-88 chr11 88209672 88209893 + 2 NA Intergenic Intergenic 33280 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 497-306 chrX 20600794 20601215 + 2 NA Intergenic Intergenic -334095 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 271-402 chr7 39220549 39220768 + 2 NA intron (NM_001370959, intron 4 of 9) MIRb|SINE|MIR 108476 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 494-120 chr2 20629290 20629716 + 2 NA intron (NM_022460, intron 4 of 6) intron (NM_022460, intron 4 of 6) 21595 NM_022460 64342 Hs.531785 NM_022460 ENSG00000118960 HS1BP3 ETM2|HS1-BP3 HCLS1 binding protein 3 protein-coding 271-426 chr8 46477938 46478117 + 2 NA Intergenic ALR/Alpha|Satellite|centr 139616 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 362-28 chr1 170654083 170654282 + 2 NA Intergenic L1ME3A|LINE|L1 -9949 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 153-62 chr21 28236224 28236323 + 2 NA Intergenic Intergenic -7606 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 263-135 chr16 60307352 60307510 + 2 NA Intergenic MIR3|SINE|MIR 52362 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 329-389 chr3 176982501 176982797 + 2 NA Intergenic LTR8A|LTR|ERV1 -165648 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 286-198 chr2 35610134 35610346 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 138835 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 256-165 chr17 54614070 54614279 + 2 NA Intergenic L1M4|LINE|L1 -286517 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 313-322 chr22 34892174 34892446 + 2 NA intron (NR_138042, intron 3 of 4) LTR79|LTR|ERVL 105606 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 495-19 chr1 238550962 238551271 + 2 NA Intergenic Intergenic -65099 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 220-47 chr10 57564847 57564977 + 2 NA Intergenic Intergenic -260353 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 297-114 chr12 118917341 118917552 + 2 NA Intergenic MIRb|SINE|MIR -64095 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 618-46 chr18 1533298 1533771 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie -173905 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 368-254 chr2 205599594 205599853 + 2 NA intron (NM_205863, intron 21 of 21) LTR45|LTR|ERV1 -82777 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 354-506 chrX 43895016 43895359 + 2 NA Intergenic AluSz|SINE|Alu -12737 NM_000898 4129 Hs.654473 NM_000898 ENSG00000069535 MAOB - monoamine oxidase B protein-coding 248-237 chr3 17906205 17906409 + 2 NA Intergenic Intergenic -56245 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 526-119 chr2 43645817 43646174 + 2 NA intron (NM_172069, intron 2 of 29) intron (NM_172069, intron 2 of 29) 8735 NM_172069 130271 Hs.164162 NM_172069 ENSG00000152527 PLEKHH2 PLEKHH1L pleckstrin homology, MyTH4 and FERM domain containing H2 protein-coding 242-356 chr6 161046973 161047119 + 2 NA intron (NM_005922, intron 2 of 26) intron (NM_005922, intron 2 of 26) 55277 NM_005922 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 212-294 chr7 18751361 18751509 + 2 NA intron (NM_058176, intron 13 of 22) intron (NM_058176, intron 13 of 22) 242165 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 484-215 chr5 66252090 66252414 + 2 NA Intergenic L2c|LINE|L2 -42806 NR_146488 101928741 Hs.676049 NR_146488 LINC02065 - long intergenic non-protein coding RNA 2065 ncRNA 610-21 chr10 68061559 68062148 + 2 NA intron (NM_001278185, intron 3 of 23) AluSx1|SINE|Alu 13430 NM_022079 26091 Hs.51891 NM_015601 ENSG00000148634 HERC4 - HECT and RLD domain containing E3 ubiquitin protein ligase 4 protein-coding 233-70 chr12 12412003 12412193 + 2 NA intron (NM_001300742, intron 2 of 3).2 L1PA6|LINE|L1 55020 NM_001330356 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 421-137 chr2 56727192 56727455 + 2 NA Intergenic L1PA15|LINE|L1 -541553 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 568-101 chr2 52340137 52340486 + 2 NA intron (NR_135237, intron 8 of 10) intron (NR_135237, intron 8 of 10) -30337 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 253-359 chr6 76331000 76331185 + 2 NA Intergenic L1MEd|LINE|L1 -258414 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 428-51 chr12 110939912 110940222 + 2 NA Intergenic AluJr|SINE|Alu 3465 NR_036513 100131138 Hs.152129 NR_036513 ENSG00000185847 LINC01405 - long intergenic non-protein coding RNA 1405 ncRNA 346-533 chr9 115420334 115420557 + 2 NA Intergenic Intergenic 278627 NR_163556 50514 Hs.148841 NM_017418 ENSG00000173077 DEC1 CTS9 deleted in esophageal cancer 1 ncRNA 455-289 chr8 135668524 135668971 + 2 NA Intergenic Intergenic 211291 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 426-221 chr5 7399279 7399595 + 2 NA intron (NM_020546, intron 1 of 24) intron (NM_020546, intron 1 of 24) 3299 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 436-177 chr3 16066578 16066978 + 2 NA Intergenic Intergenic -107902 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 611-86 chr2 214046180 214046667 + 2 NA intron (NR_047660, intron 12 of 14) L1MA3|LINE|L1 288356 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 299-492 chr9 119253645 119253921 + 2 NA intron (NM_014618, intron 2 of 7) intron (NM_014618, intron 2 of 7) 115652 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 503-150 chr2 79199281 79199677 + 2 NA Intergenic Intergenic -39726 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 256-95 chr12 119567784 119567966 + 2 NA Intergenic L1M5|LINE|L1 -25899 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 278-296 chr3 173316136 173316384 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -79692 NM_001365930 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 317-435 chr7 3487086 3487366 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 185974 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 142-4 chr1 210626463 210626559 + 2 NA intron (NM_001122834, intron 11 of 11) intron (NM_001122834, intron 11 of 11) 297145 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 525-243 chr7 71202165 71202626 + 2 NA intron (NM_022479, intron 1 of 10) L1ME4c|LINE|L1 70251 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 277-441 chr9 20338537 20338680 + 2 NA Intergenic FAM|SINE|Alu 72630 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 345-171 chr15 59843715 59843990 + 2 NA Intergenic Intergenic -154532 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 530-14 chr1 190756043 190756455 + 2 NA intron (NR_033922, intron 2 of 4) intron (NR_033922, intron 2 of 4) 131359 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 466-290 chr9 73437398 73437662 + 2 NA Intergenic MIR|SINE|MIR 285665 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 255-410 chr8 41047900 41048120 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -150184 NM_024645 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 323-25 chr1 164278966 164279139 + 2 NA Intergenic L1PA17|LINE|L1 -280308 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 355-4 chr1 34189966 34190264 + 2 NA intron (NM_001134734, intron 1 of 6) MIRb|SINE|MIR 13208 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 474-133 chr2 41034999 41035408 + 2 NA Intergenic Intergenic -522768 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 305-142 chr13 109889034 109889289 + 2 NA Intergenic L1PA15|LINE|L1 -102578 NM_003749 8660 Hs.442344 NM_003749 ENSG00000185950 IRS2 IRS-2 insulin receptor substrate 2 protein-coding 345-211 chr18 4234204 4234493 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -30254 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 324-494 chr7 54596481 54596683 + 2 NA Intergenic LTR9|LTR|ERV1 39612 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 308-118 chr12 119464490 119464727 + 2 NA intron (NM_178499, intron 2 of 13) MER49|LTR|ERV1 -129166 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 481-96 chr15 46706097 46706419 + 2 NA Intergenic L1MD1|LINE|L1 -477831 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 536-139 chr2 221243761 221244176 + 2 NA Intergenic Intergenic 328336 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 621-99 chr5 104465134 104465527 + 2 NA Intergenic Intergenic -634144 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 421-133 chr2 41762495 41762717 + 2 NA Intergenic Intergenic -114949 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 562-195 chr6 147614831 147615228 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 106339 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 180-26 chr11 37281089 37281260 + 2 NA Intergenic Intergenic -657427 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 345-501 chr7 90582851 90583190 + 2 NA Intergenic L2b|LINE|L2 -13301 NM_001287135 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 465-103 chr17 40166527 40166980 + 2 NA intron (NM_007359, intron 7 of 13) intron (NM_007359, intron 7 of 13) 4820 NR_106926 102466986 NR_106926 ENSG00000284144 MIR6866 hsa-mir-6866 microRNA 6866 ncRNA 263-287 chr4 53623963 53624146 + 2 NA Intergenic Intergenic 31098 NR_046827 100873955 Hs.351074 NR_046827 LNX1-AS2 - LNX1 antisense RNA 2 ncRNA 288-240 chr21 27395746 27395939 + 2 NA Intergenic L2c|LINE|L2 -326537 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 228-33 chr10 27625361 27625570 + 2 NA Intergenic Intergenic -119150 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 403-153 chr2 50758846 50759134 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -62728 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 540-63 chr13 106176751 106177030 + 2 NA Intergenic Intergenic -199674 NR_163477 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 241-282 chr4 162072665 162072808 + 2 NA intron (NM_020116, intron 2 of 15) MLT2B4|LTR|ERVL 50003 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 592-27 chr11 103960645 103961098 + 2 NA intron (NM_025208, intron 3 of 6) MLT1A0|LTR|ERVL-MaLR -75769 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 249-320 chr5 8394291 8394446 + 2 NA intron (NR_039984, intron 2 of 5) L1M4|LINE|L1 63196 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 231-112 chr16 12165304 12165474 + 2 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 188655 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 291-285 chr3 36682155 36682401 + 2 NA Intergenic L1M4|LINE|L1 57583 NM_033403 85443 Hs.631907 NM_033403 ENSG00000163673 DCLK3 CLR|DCAMKL3|DCDC3C|DCK3 doublecortin like kinase 3 protein-coding 321-549 chr8 71191722 71192027 + 2 NA Intergenic Intergenic 164832 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 283-368 chr5 84665229 84665454 + 2 NA Intergenic Intergenic -280461 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 522-244 chr8 2897138 2897586 + 2 NA Intergenic Intergenic -168911 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 261-290 chr4 96286958 96287203 + 2 NA Intergenic Intergenic -23623 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 419-257 chr6 133462119 133462402 + 2 NA intron (NM_172103, intron 6 of 18) intron (NM_172103, intron 6 of 18) 220761 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 155-101 chr9 115100958 115101046 + 2 NA intron (NM_002160, intron 1 of 27) intron (NM_002160, intron 1 of 27) 17155 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 509-6 chr1 68356740 68357158 + 2 NA Intergenic L2a|LINE|L2 93005 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 439-113 chr18 3633972 3634251 + 2 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) 30374 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 264-298 chr4 101119082 101119300 + 2 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 121681 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 318-96 chr11 13170131 13170301 + 2 NA Intergenic Intergenic -106436 NM_001351804 406 Hs.65734 NM_001178 ENSG00000133794 ARNTL BMAL1|BMAL1c|JAP3|MOP3|PASD3|TIC|bHLHe5 aryl hydrocarbon receptor nuclear translocator like protein-coding 216-141 chr18 7529395 7529586 + 2 NA Intergenic Intergenic -37826 NM_001105244 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 307-11 chr1 85915889 85916139 + 2 NA intron (NM_152890, intron 24 of 59) MER102c|DNA|hAT-Charlie -207581 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 565-126 chr4 37341498 37341901 + 2 NA intron (NM_001144990, intron 2 of 6) MIR|SINE|MIR 96956 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 732-93 chr8 105703528 105704234 + 2 NA intron (NM_001362837, intron 5 of 7) intron (NM_001362837, intron 5 of 7) 356622 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 250-272 chr3 43173132 43173324 + 2 NA Intergenic HAL1ME|LINE|L1 -67149 NM_032806 84892 Hs.745002 NM_032806 ENSG00000144647 POMGNT2 AGO61|C3orf39|GTDC2|MDDGA8|MDDGC8 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) protein-coding 354-253 chr2 238704689 238705036 + 2 NA Intergenic HERV16-int|LTR|ERVL 143045 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 358-54 chr10 96463214 96463558 + 2 NA intron (NM_012465, intron 2 of 20) intron (NM_012465, intron 2 of 20) 50540 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 367-245 chr20 10895597 10895880 + 2 NA intron (NR_109866, intron 3 of 6) intron (NR_109866, intron 3 of 6) 13534 NR_109866 101929413 Hs.385604 NR_109866 ENSG00000232900 LOC101929413 - uncharacterized LOC101929413 ncRNA 225-131 chr18 1843111 1843314 + 2 NA Intergenic Intergenic -483583 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 125-7 chr10 103086457 103086541 + 2 NA 3' UTR (NM_017649, exon 8 of 8) 3' UTR (NM_017649, exon 8 of 8) 67322 NM_001351192 22978 Hs.97439 NM_012229 ENSG00000076685 NT5C2 GMP|NT5B|PNT5|SPG45|SPG65|cN-II 5'-nucleotidase, cytosolic II protein-coding 388-367 chr9 69505853 69506171 + 2 NA intron (NM_001163, intron 2 of 12) AluSx|SINE|Alu 166359 NM_001163 320 Hs.171939 NM_001163 ENSG00000107282 APBA1 D9S411E|LIN10|MINT1|X11|X11A|X11ALPHA amyloid beta precursor protein binding family A member 1 protein-coding 383-80 chr12 59228456 59228691 + 2 NA Intergenic L1ME4b|LINE|L1 -308035 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 342-83 chr10 118222570 118222803 + 2 NA Intergenic Intergenic 119638 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 426-210 chr4 96874975 96875268 + 2 NA Intergenic MER21B|LTR|ERVL -491805 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 386-228 chr3 17149215 17149507 + 2 NA Intergenic Intergenic 216165 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 313-416 chr5 8368296 8368481 + 2 NA intron (NR_039984, intron 3 of 5) L1MEc|LINE|L1 89176 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 253-204 chr2 183962310 183962479 + 2 NA Intergenic Intergenic -416581 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 131-31 chr16 47796703 47796800 + 2 NA Intergenic L1MA9|LINE|L1 -61830 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 251-233 chr3 61145935 61146180 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 105395 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 560-76 chr19 32209277 32209738 + 2 NA Intergenic L1MC5|LINE|L1 -103591 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 279-241 chr22 49504968 49505195 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) 38385 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 240-284 chr3 55079201 55079369 + 2 NA Intergenic MER20|DNA|hAT-Charlie -98887 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 354-211 chr2 64691643 64691864 + 2 NA Intergenic L1MEf|LINE|L1 -37840 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 238-178 chr2 89847502 89847637 + 2 NA Intergenic Intergenic -209662 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 310-477 chr7 41082370 41082550 + 2 NA Intergenic Intergenic -19144 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 273-348 chr5 26566226 26566438 + 2 NA Intergenic Intergenic 472254 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 324-45 chr10 6960832 6961049 + 2 NA Intergenic Intergenic 181342 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 320-101 chr11 111516207 111516402 + 2 NA intron (NM_001100388, intron 3 of 5) intron (NM_001100388, intron 3 of 5) 1519 NM_001100388 399949 Hs.411600 NM_207430 ENSG00000183644 C11orf88 - chromosome 11 open reading frame 88 protein-coding 280-70 chr11 22619444 22619606 + 2 NA Intergenic L2|LINE|L2 6316 NM_022725 2188 Hs.632151 NM_022725 ENSG00000183161 FANCF FAF FA complementation group F protein-coding 588-140 chr6 122116065 122116481 + 2 NA Intergenic Intergenic -283278 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 268-389 chr8 40261448 40261612 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 81833 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 360-209 chr2 34177812 34178163 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 110761 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 352-71 chr11 16013272 16013496 + 2 NA intron (NM_017508, intron 12 of 14) intron (NM_017508, intron 12 of 14) -43763 NR_106721 102464826 NR_106721 ENSG00000284094 MIR6073 hsa-mir-6073 microRNA 6073 ncRNA 222-36 chr10 58848424 58848602 + 2 NA Intergenic Intergenic 133498 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 773-15 chr18 10290974 10291370 + 2 NA Intergenic Intergenic 123198 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 437-42 chr11 80410795 80411080 + 2 NA Intergenic L1PA17|LINE|L1 351866 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 391-348 chr8 77606743 77606980 + 2 NA Intergenic Intergenic 156164 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 562-168 chr5 24688366 24688723 + 2 NA Intergenic L1MA2|LINE|L1 -43566 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 518-184 chr3 123075343 123075798 + 2 NA intron (NM_006810, intron 1 of 16) L2|LINE|L2 8545 NM_006810 10954 Hs.477352 NM_006810 ENSG00000065485 PDIA5 PDIR protein disulfide isomerase family A member 5 protein-coding 342-134 chr13 89818220 89818408 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -253901 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 213-195 chr4 31086191 31086366 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -84866 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 359-502 chr9 11741833 11742083 + 2 NA Intergenic Intergenic -951427 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 183-53 chr15 69256120 69256261 + 2 NA exon (NM_015554, exon 3 of 5) exon (NM_015554, exon 3 of 5) -42722 NM_017705 54852 Hs.591096 NM_017705 ENSG00000137819 PAQR5 MPRG progestin and adipoQ receptor family member 5 protein-coding 454-88 chr14 60111536 60111971 + 2 NA intron (NM_001330177, intron 2 of 10) (GATTTAA)n|Simple_repeat|Simple_repeat 19830 NM_001330177 64430 Hs.509499 NM_022495 ENSG00000126773 PCNX4 C14orf135|FBP2|PCNXL4 pecanex 4 protein-coding 332-79 chr10 132051747 132051998 + 2 NA Intergenic AluJb|SINE|Alu -14074 NM_001323088 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 325-172 chr14 71646796 71647039 + 2 NA intron (NM_001354286, intron 8 of 24) intron (NM_001354286, intron 8 of 24) 60619 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 222-21 chr1 210586927 210587097 + 2 NA intron (NM_001122834, intron 9 of 11) intron (NM_001122834, intron 9 of 11) 257646 NM_001170580 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 204-158 chr2 190828383 190828538 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -52361 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 400-230 chr3 154915896 154916139 + 2 NA Intergenic L1PA13|LINE|L1 -108107 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 321-435 chr4 140264952 140265229 + 2 NA intron (NM_032547, intron 1 of 4) MER20B|DNA|hAT-Charlie 7782 NM_032547 60592 Hs.480815 NM_032547 ENSG00000153130 SCOC HRIHFB2072|SCOCO|UNC-69 short coiled-coil protein protein-coding 270-285 chr5 6149424 6149668 + 2 NA Intergenic L1MEg|LINE|L1 187746 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 373-419 chr8 115165670 115165874 + 2 NA Intergenic AluSz|SINE|Alu 502241 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 261-406 chr9 19018240 19018397 + 2 NA intron (NM_001287049, intron 1 of 3) intron (NM_001287049, intron 1 of 3) 14891 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 564-55 chr14 81974822 81975212 + 2 NA Intergenic MIR3|SINE|MIR -231879 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 177-160 chr8 111984533 111984682 + 2 NA Intergenic Intergenic 607968 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 486-168 chr20 20756894 20757297 + 2 NA Intergenic Intergenic -44451 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 355-114 chr11 127309404 127309727 + 2 NA intron (NR_120580, intron 1 of 2) LTR85b|LTR|Gypsy? 38495 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 380-422 chr9 79786435 79786652 + 2 NA Intergenic Intergenic -37987 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 348-442 chr6 37293262 37293567 + 2 NA intron (NR_130108, intron 8 of 12) Tigger1|DNA|TcMar-Tigger -35259 NR_104443 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 322-306 chr21 34166062 34166324 + 2 NA Intergenic MER61-int|LTR|ERV1 -14484 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 322-102 chr11 112367222 112367469 + 2 NA Intergenic Intergenic 96596 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 229-216 chr2 211015597 211015743 + 2 NA Intergenic Intergenic 398099 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 317-321 chr3 169917211 169917431 + 2 NA intron (NM_182610, intron 2 of 8) intron (NM_182610, intron 2 of 8) 5749 NM_182610 344658 Hs.439922 NM_182610 ENSG00000187033 SAMD7 - sterile alpha motif domain containing 7 protein-coding 308-208 chr19 41082417 41082699 + 2 NA Intergenic L1M2|LINE|L1 -5893 NM_000766 1553 Hs.567252 NM_000766 ENSG00000197838 CYP2A13 CPAD|CYP2A|CYPIIA13 cytochrome P450 family 2 subfamily A member 13 protein-coding 230-30 chr1 232924745 232924918 + 2 NA Intergenic Intergenic -25780 NR_138026 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 759-63 chr6 119777221 119777762 + 2 NA intron (NR_134600, intron 2 of 3) L1MEg2|LINE|L1 227683 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 297-185 chr18 10371150 10371393 + 2 NA Intergenic Intergenic 43099 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 356-62 chr10 92829779 92830082 + 2 NA intron (NM_001013848, intron 1 of 22) MER41B|LTR|ERV1 -1178 NM_001319194 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 300-292 chr3 144060891 144061133 + 2 NA Intergenic AluJr|SINE|Alu 87931 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 340-450 chr5 63659842 63660062 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 302340 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 202-164 chr3 68852256 68852427 + 2 NA intron (NM_001005527, intron 3 of 5) intron (NM_001005527, intron 3 of 5) 80206 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 301-124 chr14 61015827 61016073 + 2 NA exon (NM_001172702, exon 4 of 17) exon (NM_001172702, exon 4 of 17) -34260 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 480-242 chr5 147154622 147154974 + 2 NA Intergenic MIRb|SINE|MIR -73278 NM_001271899 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 326-21 chr1 95459927 95460227 + 2 NA Intergenic L1M6|LINE|L1 -14660 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 465-97 chr16 63915967 63916275 + 2 NA Intergenic Intergenic 1205942 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 271-15 chr1 112767789 112767959 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 47307 NM_182759 284467 Hs.439116 NM_182759 ENSG00000184599 TAFA3 FAM19A3|TAFA-3 TAFA chemokine like family member 3 protein-coding 578-16 chr1 224821105 224821593 + 2 NA Intergenic Intergenic -108305 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 349-456 chr6 122964641 122964830 + 2 NA Intergenic L1MA9|LINE|L1 -31500 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 209-29 chr10 7862512 7862656 + 2 NA intron (NM_031923, intron 2 of 6) L1ME1|LINE|L1 44079 NM_031923 83860 Hs.527688 NM_031923 ENSG00000165632 TAF3 TAF140|TAFII-140|TAFII140 TATA-box binding protein associated factor 3 protein-coding 241-81 chr12 27201008 27201210 + 2 NA Intergenic Intergenic -43177 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 383-91 chr12 127701189 127701407 + 2 NA Intergenic Intergenic -45710 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 154-56 chr20 14645736 14645849 + 2 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) 91408 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 336-163 chr14 53989035 53989283 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie -32268 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 477-52 chr11 20207605 20208015 + 2 NA Intergenic Intergenic -47335 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 148-19 chr13 25198453 25198576 + 2 NA Intergenic Intergenic 17182 NR_120427 102723318 Hs.549877 NR_120427 LINC01053 - long intergenic non-protein coding RNA 1053 ncRNA 426-170 chr22 25847428 25847833 + 2 NA exon (NM_032608, exon 20 of 44) exon (NM_032608, exon 20 of 44) 105442 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 257-348 chr6 55090494 55090694 + 2 NA Intergenic L1PA5|LINE|L1 -15866 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 421-82 chr14 57752735 57752975 + 2 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 112144 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 292-395 chr7 7424604 7424894 + 2 NA intron (NM_001037763, intron 25 of 34) intron (NM_001037763, intron 25 of 34) 111124 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 194-15 chr1 199452406 199452563 + 2 NA Intergenic CR1_Mam|LINE|CR1 303886 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 280-244 chr22 28271265 28271443 + 2 NA intron (NM_001145418, intron 5 of 22) intron (NM_001145418, intron 5 of 22) -188515 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 150-81 chr4 76454558 76454667 + 2 NA intron (NM_020859, intron 1 of 10) L1MB3|LINE|L1 19383 NM_020859 57619 Hs.683808 NM_020859 ENSG00000138771 SHROOM3 APXL3|MSTP013|SHRM|ShrmL shroom family member 3 protein-coding 224-86 chr14 56870762 56870948 + 2 NA intron (NR_146411, intron 2 of 2) AluSq|SINE|Alu 57697 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 479-137 chr3 63658660 63659082 + 2 NA intron (NM_001348756, intron 2 of 4) L2b|LINE|L2 6196 NM_001348756 132203 Hs.130704 NM_001080537 ENSG00000188817 SNTN S100A1L|S100AL|sentan sentan, cilia apical structure protein protein-coding 402-208 chr3 51532460 51532768 + 2 NA Intergenic AluSc|SINE|Alu -6105 NM_001322253 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 308-128 chr13 61906384 61906540 + 2 NA Intergenic LTR29|LTR|ERV1 123086 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 248-152 chr17 55035826 55036038 + 2 NA intron (NM_178509, intron 10 of 17) L1MA8|LINE|L1 -67147 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 316-39 chr1 216731277 216731588 + 2 NA intron (NM_001243513, intron 1 of 7) intron (NM_001243513, intron 1 of 7) -7960 NM_001243519 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 126-47 chr5 6876852 6876933 + 2 NA Intergenic Intergenic -48971 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 346-41 chr10 14277340 14277577 + 2 NA intron (NR_134578, intron 2 of 3) MLT1A0|LTR|ERVL-MaLR 53426 NR_134578 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 300-45 chr10 59494327 59494521 + 2 NA Intergenic L1MA5|LINE|L1 -131243 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 777-49 chr4 32566032 32566615 + 2 NA Intergenic L1MEf|LINE|L1 215285 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 903-24 chr3 105728713 105729397 + 2 NA intron (NM_001321822, intron 9 of 19) intron (NM_001321822, intron 9 of 19) 138536 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 273-217 chr2 64782384 64782587 + 2 NA Intergenic L2|LINE|L2 81146 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 340-534 chr8 81455627 81455884 + 2 NA Intergenic Intergenic 5768 NM_001080526 646480 Hs.653176 NM_001080526 ENSG00000205186 FABP9 PERF|PERF15|T-FABP|TLBP fatty acid binding protein 9 protein-coding 361-130 chr14 20004679 20004942 + 2 NA Intergenic Intergenic 2748 NR_145508 390432 NM_001348271 ENSG00000196383 OR4Q2 OR4Q2P olfactory receptor family 4 subfamily Q member 2 (gene/pseudogene) protein-coding 455-255 chr7 29997078 29997331 + 2 NA Intergenic L1MEc|LINE|L1 -6915 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 305-555 chr8 141967745 141967991 + 2 NA Intergenic Intergenic -181555 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 323-332 chr3 89566260 89566572 + 2 NA Intergenic L1M1|LINE|L1 458795 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 372-205 chr19 27536776 27537112 + 2 NA Intergenic ALR/Alpha|Satellite|centr -256487 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 221-270 chr6 135654301 135654485 + 2 NA intron (NR_152842, intron 3 of 5) L1MCa|LINE|L1 156592 NR_026805 100131814 Hs.734007 NR_026805 ENSG00000231028 LINC00271 C6orf217|NCRNA00271 long intergenic non-protein coding RNA 271 ncRNA 273-280 chr22 49404472 49404720 + 2 NA Intergenic MIR|SINE|MIR 138870 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 230-355 chr7 68236102 68236289 + 2 NA Intergenic Intergenic 215942 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 427-23 chr10 53700539 53700881 + 2 NA Intergenic Intergenic -785520 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 425-168 chr21 24607052 24607413 + 2 NA Intergenic Intergenic 178492 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 210-166 chr22 36946894 36947072 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -18265 NR_038954 100506241 Hs.640023 NR_038954 ENSG00000215403 LL22NC01-81G9.3 - uncharacterized protein FLJ39582-like ncRNA 664-9 chr1 109404408 109404828 + 2 NA intron (NM_001199774, intron 8 of 8) MIRc|SINE|MIR -6700 NM_002959 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 202-106 chr2 4590633 4590815 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 65498 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 285-13 chr1 102293061 102293227 + 2 NA Intergenic L1PA13|LINE|L1 -295910 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 426-75 chr14 86029674 86030012 + 2 NA intron (NR_110155, intron 1 of 3) MER21B|LTR|ERVL 95165 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 353-511 chr8 46329378 46329595 + 2 NA Intergenic GSAT|Satellite|centr 288157 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 129-42 chr2 164802911 164802990 + 2 NA intron (NM_001278458, intron 2 of 16) intron (NM_001278458, intron 2 of 16) -37799 NR_110574 101929633 Hs.570267 NR_110574 LOC101929633 - uncharacterized LOC101929633 ncRNA 361-396 chr6 126548228 126548437 + 2 NA Intergenic Intergenic 63701 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 235-217 chr22 30183598 30183753 + 2 NA Intergenic MIR|SINE|MIR -55519 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 308-443 chr6 167146069 167146345 + 2 NA Intergenic Intergenic 11624 NM_005299 2853 Hs.248124 NM_005299 ENSG00000120436 GPR31 12-HETER|HETER|HETER1 G protein-coupled receptor 31 protein-coding 227-177 chr2 105010914 105011103 + 2 NA intron (NR_110603, intron 1 of 2) L1ME1|LINE|L1 -27061 NM_182640 64965 Hs.590900 NM_182640 ENSG00000135972 MRPS9 MRP-S9|RPMS9|S9mt mitochondrial ribosomal protein S9 protein-coding 389-211 chr21 18978979 18979211 + 2 NA Intergenic Intergenic -219283 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 370-150 chr14 83949520 83949843 + 2 NA Intergenic L1MA4A|LINE|L1 1307049 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 253-64 chr11 10082229 10082414 + 2 NA intron (NM_030962, intron 2 of 39) L1M2|LINE|L1 211886 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 255-41 chr10 113922574 113922753 + 2 NA Intergenic Intergenic 68002 NM_198514 374354 Hs.369924 NM_198514 ENSG00000196865 NHLRC2 FINCA NHL repeat containing 2 protein-coding 229-423 chrX 88586296 88586458 + 2 NA Intergenic L1PA15|LINE|L1 -160848 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 334-323 chr21 40943083 40943381 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack -96074 NR_073202 1826 Hs.160418 NM_001389 ENSG00000171587 DSCAM CHD2|CHD2-42|CHD2-52 DS cell adhesion molecule protein-coding 216-46 chr10 99944107 99944281 + 2 NA intron (NR_024130, intron 2 of 4) intron (NR_024130, intron 2 of 4) -13287 NM_001318326 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 355-508 chr8 112479804 112480119 + 2 NA intron (NM_001363185, intron 29 of 66) MSTB-int|LTR|ERVL-MaLR -163532 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 298-21 chr1 194602974 194603202 + 2 NA Intergenic Intergenic 1298343 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 356-492 chr8 132286480 132286695 + 2 NA intron (NM_004519, intron 1 of 14) MSTB2-int|LTR|ERVL-MaLR 160675 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 317-410 chr6 41572466 41572701 + 2 NA intron (NM_001012427, intron 2 of 16) intron (NM_001012427, intron 2 of 16) -23962 NR_126415 101060264 Hs.571099 NR_126415 ENSG00000234753 FOXP4-AS1 - FOXP4 antisense RNA 1 ncRNA 287-122 chr13 22478289 22478470 + 2 NA Intergenic Intergenic 268094 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 435-14 chr1 98504637 98504980 + 2 NA Intergenic FLAM_A|SINE|Alu -156913 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 541-246 chr8 131475209 131475555 + 2 NA Intergenic Intergenic -428711 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 174-135 chr6 167418926 167419032 + 2 NA Intergenic L1ME4b|LINE|L1 -34469 NR_163193 6953 Hs.351 NM_004610 ENSG00000203690 TCP10 TCP10A t-complex 10 pseudo 341-468 chr6 123731829 123732140 + 2 NA Intergenic Intergenic -71862 NM_001300738 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 554-63 chr12 109344741 109345144 + 2 NA Intergenic L1MB7|LINE|L1 14546 NR_120462 101928138 Hs.143843 NR_120462 ENSG00000256560 LINC01486 - long intergenic non-protein coding RNA 1486 ncRNA 276-156 chr14 83898310 83898521 + 2 NA Intergenic MIR|SINE|MIR 1255783 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 425-259 chr6 67212809 67213099 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -842397 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 237-276 chr4 166503923 166504118 + 2 NA Intergenic Intergenic 630783 NM_012464 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 253-100 chr12 40032986 40033177 + 2 NA intron (NM_052885, intron 2 of 9) MIR|SINE|MIR 73000 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 333-420 chr4 167654628 167654820 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -420134 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 213-199 chr4 52044949 52045094 + 2 NA non-coding (NR_147189, exon 1 of 3) non-coding (NR_147189, exon 1 of 3) 216 NR_147189 105377652 Hs.298335 NR_147189 ENSG00000251040 LINC02480 - long intergenic non-protein coding RNA 2480 ncRNA 409-147 chr2 115846987 115847317 + 2 NA Intergenic Intergenic 503337 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 237-244 chr3 88256781 88257011 + 2 NA Intergenic Intergenic -81560 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 121-45 chr3 155537303 155537420 + 2 NA intron (NM_001349252, intron 10 of 24) L1PB1|LINE|L1 51558 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 290-404 chr7 7453341 7453586 + 2 NA exon (NM_001037763, exon 17 of 35) exon (NM_001037763, exon 17 of 35) 82410 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 271-377 chr6 61562924 61563176 + 2 NA intron (NR_146870, intron 14 of 15) MER67C|LTR|ERV1 -11080 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 248-430 chr9 77975723 77975913 + 2 NA intron (NM_002072, intron 1 of 6) AluSc|SINE|Alu 55993 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 212-350 chr9 86553712 86553869 + 2 NA Intergenic Intergenic -199380 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 405-43 chr11 38642752 38643104 + 2 NA intron (NR_120554, intron 1 of 4) L1MA3|LINE|L1 3428 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 492-268 chr8 125195183 125195494 + 2 NA intron (NM_001349486, intron 5 of 7) MER5B|DNA|hAT-Charlie 103478 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 388-98 chr13 98732994 98733347 + 2 NA intron (NM_005073, intron 1 of 22) MLT1D|LTR|ERVL-MaLR 19502 NM_005073 6564 Hs.436893 NM_005073 ENSG00000088386 SLC15A1 HPECT1|HPEPT1|PEPT1 solute carrier family 15 member 1 protein-coding 226-258 chr4 89858628 89858754 + 2 NA Intergenic Intergenic -20387 NM_001146055 6622 Hs.21374 NM_000345 ENSG00000145335 SNCA NACP|PARK1|PARK4|PD1 synuclein alpha protein-coding 409-127 chr2 4092951 4093332 + 2 NA Intergenic Intergenic 118980 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 272-419 chr7 53282295 53282506 + 2 NA Intergenic Intergenic 246767 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 199-93 chr19 37400892 37401047 + 2 NA Intergenic L1MD|LINE|L1 29870 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 231-311 chr6 106827371 106827582 + 2 NA Intergenic HAL1b|LINE|L1 -39935 NR_147986 100422737 Hs.634681 NR_015365 ENSG00000235142 LINC02532 - long intergenic non-protein coding RNA 2532 ncRNA 338-221 chr18 2479896 2480127 + 2 NA Intergenic L1MC2|LINE|L1 91494 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 342-135 chr14 20017796 20018024 + 2 NA Intergenic Intergenic -2717 NM_001004712 122740 Hs.626814 NM_001004712 ENSG00000169484 OR4K14 OR14-18|OR14-22 olfactory receptor family 4 subfamily K member 14 protein-coding 336-204 chr16 82662637 82662900 + 2 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -26163 NR_107025 102465863 NR_107025 ENSG00000277387 MIR8058 hsa-mir-8058 microRNA 8058 ncRNA 594-41 chr13 55912360 55912709 + 2 NA Intergenic Intergenic 738080 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 291-372 chr5 175646253 175646415 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -11737 NM_001367711 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 165-137 chr9 32019918 32020057 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -364616 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 442-154 chr2 240171857 240172279 + 2 NA Intergenic Intergenic -31410 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 545-246 chr8 129091965 129092317 + 2 NA Intergenic Intergenic -126140 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 507-69 chr12 117868246 117868744 + 2 NA intron (NM_173598, intron 1 of 19) MIR|SINE|MIR 100495 NM_173598 283455 Hs.375836 NM_173598 ENSG00000171435 KSR2 - kinase suppressor of ras 2 protein-coding 386-75 chr12 29462638 29462874 + 2 NA intron (NM_001353179, intron 18 of 25) MIRc|SINE|MIR 36937 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 266-228 chr22 34438224 34438398 + 2 NA Intergenic Intergenic -515423 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 512-66 chr12 61650038 61650459 + 2 NA Intergenic Intergenic 542591 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 324-470 chr6 101139035 101139220 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -257755 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 319-104 chr12 13912321 13912485 + 2 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 67953 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 345-90 chr11 58704613 58704825 + 2 NA Intergenic L1PA17|LINE|L1 27224 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 412-106 chr16 20307964 20308283 + 2 NA Intergenic MIR|SINE|MIR 19390 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 500-31 chr10 67655388 67655869 + 2 NA intron (NM_001291133, intron 1 of 8) AluSx|SINE|Alu 10032 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 237-252 chr3 117508717 117508881 + 2 NA Intergenic Intergenic 182126 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 301-212 chr2 96478824 96478974 + 2 NA Intergenic L1M5|LINE|L1 26458 NM_001285485 93082 Hs.149219 NM_001080535 ENSG00000163121 NEURL3 LINCR|RNF132 neuralized E3 ubiquitin protein ligase 3 protein-coding 435-253 chr8 125315501 125315895 + 2 NA intron (NM_001349486, intron 5 of 7) intron (NM_001349486, intron 5 of 7) -114660 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 369-277 chr3 180413774 180414064 + 2 NA promoter-TSS (NR_132416) promoter-TSS (NR_132416) -254 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 285-403 chr8 43836872 43837112 + 2 NA Intergenic ALR/Alpha|Satellite|centr 544550 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 300-435 chr7 69272802 69272966 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger 324740 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 252-275 chr3 118997777 118998016 + 2 NA intron (NM_001353319, intron 1 of 7) intron (NM_001353319, intron 1 of 7) 36950 NM_001015887 152404 Hs.112873 NM_152538 ENSG00000144847 IGSF11 BT-IgSF|CT119|CXADRL1|Igsf13|VSIG3 immunoglobulin superfamily member 11 protein-coding 292-299 chr3 178640734 178641006 + 2 NA intron (NM_001278911, intron 1 of 4) L1MC|LINE|L1 82020 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 546-232 chr8 56798223 56798570 + 2 NA Intergenic Intergenic 195471 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 333-479 chr5 150912555 150912814 + 2 NA Intergenic L1M3de|LINE|L1 -7701 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 211-257 chr6 61526844 61527014 + 2 NA Intergenic L2c|LINE|L2 -47201 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 533-98 chr2 50916710 50917167 + 2 NA 3' UTR (NM_001330081, exon 6 of 6) 3' UTR (NM_001330081, exon 6 of 6) 115194 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 785-12 chr10 75687348 75687921 + 2 NA intron (NR_131178, intron 1 of 7) Tigger1|DNA|TcMar-Tigger -24821 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 201-246 chr8 126134005 126134173 + 2 NA Intergenic Intergenic -182892 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 385-35 chr10 83113151 83113407 + 2 NA Intergenic L1PA13|LINE|L1 563810 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 243-372 chr5 156858983 156859218 + 2 NA Intergenic Intergenic 8805 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 429-183 chr21 29540992 29541276 + 2 NA intron (NM_001330993, intron 15 of 16) AluSc|SINE|Alu 45087 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 293-451 chr8 121848595 121848775 + 2 NA Intergenic Intergenic -207245 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 430-290 chr7 62916609 62916880 + 2 NA Intergenic ALR/Alpha|Satellite|centr 387312 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 477-303 chr9 96411734 96412039 + 2 NA intron (NM_153695, intron 1 of 4) AluSx3|SINE|Alu 6484 NM_153695 195828 Hs.494557 NM_153695 ENSG00000165244 ZNF367 AFF29|CDC14B|ZFF29 zinc finger protein 367 protein-coding 266-223 chr21 24771519 24771710 + 2 NA Intergenic Intergenic -68936 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 535-169 chr3 83453363 83453770 + 2 NA Intergenic Intergenic 1416009 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 560-174 chr7 50260818 50261188 + 2 NA Intergenic L2c|LINE|L2 -43061 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 159-38 chr2 13650709 13650838 + 2 NA Intergenic LTR27B|LTR|ERV1 -643760 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 174-64 chr2 69650281 69650405 + 2 NA intron (NM_001320698, intron 1 of 14) L1ME4a|LINE|L1 6535 NM_001320698 307 Hs.422986 NM_001153 ENSG00000196975 ANXA4 ANX4|HEL-S-274|P32.5|PAP-II|PIG28|PP4-X|ZAP36 annexin A4 protein-coding 251-287 chr5 23755182 23755386 + 2 NA Intergenic Intergenic -196064 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 285-411 chr8 81954861 81955011 + 2 NA Intergenic Intergenic -112650 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 274-413 chr9 81240777 81241032 + 2 NA Intergenic Intergenic 448631 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 620-38 chr14 51324496 51325091 + 2 NA intron (NR_145423, intron 1 of 1) L1MA9|LINE|L1 3592 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 327-52 chr10 65457237 65457442 + 2 NA Intergenic Intergenic -114086 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 258-38 chr1 246986208 246986450 + 2 NA 3' UTR (NM_020394, exon 4 of 4) 3' UTR (NM_020394, exon 4 of 4) 21728 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 396-44 chr10 34851239 34851581 + 2 NA Intergenic Intergenic 35642 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 526-52 chr11 122483385 122483820 + 2 NA Intergenic L1MA2|LINE|L1 -60731 NR_137179 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 278-269 chr3 45976500 45976700 + 2 NA intron (NM_024513, intron 4 of 17) intron (NM_024513, intron 4 of 17) 19224 NM_024513 79443 Hs.200227 NM_024513 ENSG00000163820 FYCO1 CATC2|CTRCT18|RUFY3|ZFYVE7 FYVE and coiled-coil domain containing 1 protein-coding 402-227 chr4 13844898 13845256 + 2 NA intron (NR_121681, intron 3 of 3) intron (NR_121681, intron 3 of 3) 189898 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 604-158 chr8 36332945 36333395 + 2 NA Intergenic L1MC1|LINE|L1 -451204 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 609-75 chr3 23140708 23141201 + 2 NA Intergenic L1PA7|LINE|L1 61624 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 589-67 chr2 72244472 72244836 + 2 NA intron (NR_135773, intron 19 of 21) L1MC2|LINE|L1 -96792 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 354-248 chr2 218158312 218158621 + 2 NA Intergenic Intergenic 8496 NM_000634 3577 Hs.194778 NM_000634 ENSG00000163464 CXCR1 C-C|C-C-CKR-1|CD128|CD181|CDw128a|CKR-1|CMKAR1|IL8R1|IL8RA|IL8RBA C-X-C motif chemokine receptor 1 protein-coding 331-208 chr17 69835169 69835492 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -126377 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 471-125 chr2 4219644 4219953 + 2 NA Intergenic Intergenic 245637 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 264-316 chr5 29651471 29651693 + 2 NA Intergenic Intergenic -228978 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 266-14 chr1 117691352 117691509 + 2 NA Intergenic Intergenic 85382 NM_017709 54855 Hs.356216 NM_017709 ENSG00000183508 TENT5C FAM46C terminal nucleotidyltransferase 5C protein-coding 279-179 chr2 76413314 76413529 + 2 NA Intergenic L1MD|LINE|L1 -572544 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 501-20 chr10 39299170 39299610 + 2 NA Intergenic ALR/Alpha|Satellite|centr 602794 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 313-469 chr6 73900325 73900536 + 2 NA Intergenic L1M2|LINE|L1 -169021 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 386-21 chr1 232048953 232049161 + 2 NA Intergenic L2|LINE|L2 123223 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 132-16 chr11 45625088 45625206 + 2 NA Intergenic Charlie17b|DNA|hAT-Charlie 40475 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 277-284 chr4 53810810 53811000 + 2 NA Intergenic Intergenic 115004 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 383-294 chr4 132694702 132695004 + 2 NA Intergenic L1MB7|LINE|L1 103764 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 719-23 chr13 113287770 113288319 + 2 NA Intergenic L1MC4a|LINE|L1 -9195 NM_005561 3916 Hs.494419 NM_005561 ENSG00000185896 LAMP1 CD107a|LAMPA|LGP120 lysosomal associated membrane protein 1 protein-coding 310-429 chr5 144651684 144651953 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 446427 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 218-360 chrX 24814358 24814518 + 2 NA intron (NM_016937, intron 29 of 36) intron (NM_016937, intron 29 of 36) 69997 NR_003007 677773 Hs.689695 NR_003007 ENSG00000251869 SCARNA23 ACA12 small Cajal body-specific RNA 23 ncRNA 303-233 chr2 181655770 181655936 + 2 NA intron (NR_027690, intron 1 of 11) intron (NR_027690, intron 1 of 11) 1252 NM_201548 375298 Hs.732358 NM_201548 ENSG00000188452 CERKL RP26 ceramide kinase like protein-coding 231-216 chr3 16076641 16076798 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -97961 NM_054110 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 501-220 chr5 145416328 145416765 + 2 NA Intergenic L1PA11|LINE|L1 418796 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 352-457 chr6 63144475 63144701 + 2 NA Intergenic L1M1|LINE|L1 175389 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 356-499 chr9 24397342 24397530 + 2 NA Intergenic AluJr|SINE|Alu 148240 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 225-192 chr22 39101223 39101369 + 2 NA exon (NM_001166003, exon 3 of 6) exon (NM_001166003, exon 3 of 6) 4052 NM_181773 164668 Hs.440515 NM_181773 ENSG00000100298 APOBEC3H A3H|ARP-10|ARP10 apolipoprotein B mRNA editing enzyme catalytic subunit 3H protein-coding 350-429 chr5 174277787 174278044 + 2 NA Intergenic Intergenic -58439 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 523-78 chr14 52977209 52977584 + 2 NA Intergenic AluJb|SINE|Alu -26299 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 173-146 chr9 90277706 90277842 + 2 NA Intergenic L1MCa|LINE|L1 155715 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 336-340 chr21 30256381 30256577 + 2 NA Intergenic Intergenic 26471 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 260-25 chr1 186052141 186052337 + 2 NA intron (NM_031935, intron 42 of 106) L2b|LINE|L2 -244034 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 242-179 chr2 62068962 62069137 + 2 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) -127066 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 460-56 chr11 122756320 122756766 + 2 NA intron (NM_001363365, intron 1 of 13) intron (NM_001363365, intron 1 of 13) -81957 NM_019604 56253 Hs.159523 NM_019604 ENSG00000109943 CRTAM CD355 cytotoxic and regulatory T cell molecule protein-coding 275-172 chr2 337952 338178 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 21781 NR_146953 105373350 NR_146953 LINC01865 - long intergenic non-protein coding RNA 1865 ncRNA 555-51 chr14 26552003 26552386 + 2 NA intron (NM_001366391, intron 2 of 5) intron (NM_001366391, intron 2 of 5) 1236 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 309-288 chr2 212729251 212729411 + 2 NA Intergenic AluJo|SINE|Alu -66000 NR_131942 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 310-47 chr10 77326673 77326928 + 2 NA intron (NM_001322838, intron 1 of 29) MIRc|SINE|MIR 23961 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 161-103 chr7 36852937 36853079 + 2 NA non-coding (NR_038120, exon 6 of 6) non-coding (NR_038120, exon 6 of 6) 66424 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 488-238 chr6 94671620 94671938 + 2 NA Intergenic Intergenic 905672 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 188-76 chr17 55358535 55358673 + 2 NA Intergenic L1M4b|LINE|L1 63231 NM_012329 23531 Hs.463483 NM_012329 ENSG00000108960 MMD MMA|MMD1|PAQR11 monocyte to macrophage differentiation associated protein-coding 470-242 chr6 124839119 124839523 + 2 NA Intergenic Intergenic -123224 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 127-64 chr5 3410466 3410541 + 2 NA Intergenic L1MEg|LINE|L1 -42313 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 200-282 chr9 11420857 11421021 + 2 NA Intergenic Intergenic 807733 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 430-183 chr3 19452723 19453006 + 2 NA intron (NM_144633, intron 10 of 15) intron (NM_144633, intron 10 of 15) -137933 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 118-25 chr2 48977520 48977613 + 2 NA intron (NM_000145, intron 8 of 9) intron (NM_000145, intron 8 of 9) -82037 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 270-164 chr18 65718967 65719138 + 2 NA Intergenic L1MB4|LINE|L1 -31200 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 701-39 chr2 7601239 7601777 + 2 NA Intergenic Intergenic 180247 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 432-248 chr6 71425821 71426083 + 2 NA intron (NR_121615, intron 1 of 7) intron (NR_121615, intron 1 of 7) 4925 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 365-359 chr6 120475640 120475939 + 2 NA Intergenic L1MB1|LINE|L1 460610 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 326-111 chr11 118217520 118217782 + 2 NA intron (NM_001098526, intron 1 of 9) intron (NM_001098526, intron 1 of 9) -4705 NR_104479 120425 Hs.16291 NM_153206 ENSG00000160593 JAML AMICA|AMICA1|CREA7-1|CREA7-4|Gm638 junction adhesion molecule like protein-coding 239-440 chr9 117567985 117568148 + 2 NA Intergenic Intergenic -80540 NR_109806 101928797 Hs.382317 NR_109806 ENSG00000233569 LOC101928797 - uncharacterized LOC101928797 ncRNA 304-533 chr8 121350716 121350898 + 2 NA Intergenic Intergenic -288539 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 433-55 chr12 14318734 14319055 + 2 NA Intergenic Intergenic -46738 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 470-57 chr12 96925644 96926070 + 2 NA intron (NM_001135177, intron 4 of 13) intron (NM_001135177, intron 4 of 13) 18391 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 377-128 chr14 82070530 82070821 + 2 NA Intergenic Intergenic -327537 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 369-433 chr8 139040802 139041077 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -126898 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 399-158 chr2 118651274 118651572 + 2 NA Intergenic L1MA8|LINE|L1 -48457 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 249-378 chr7 32135420 32135591 + 2 NA intron (NM_001322059, intron 3 of 17) L1MA9|LINE|L1 -64069 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 224-229 chr4 113869547 113869689 + 2 NA Intergenic Intergenic -107691 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 271-169 chr17 73228703 73228926 + 2 NA intron (NM_001098832, intron 1 of 3) intron (NM_001098832, intron 1 of 3) -1097 NM_001289412 84923 Hs.741276 NM_032837 ENSG00000133193 FAM104A - family with sequence similarity 104 member A protein-coding 579-57 chr17 74107650 74108136 + 2 NA Intergenic AluSz6|SINE|Alu -95785 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 264-340 chr5 131869781 131869991 + 2 NA intron (NM_001303622, intron 9 of 12) L1MC1|LINE|L1 -72869 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 488-212 chr5 62828752 62829063 + 2 NA Intergenic Intergenic 250088 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 328-107 chr12 43698458 43698650 + 2 NA Intergenic L1MA2|LINE|L1 60236 NM_031292 83448 Hs.23554 NM_031292 ENSG00000129317 PUS7L - pseudouridine synthase 7 like protein-coding 340-313 chr20 23425671 23425867 + 2 NA Intergenic Intergenic -4250 NM_001283026 63908 Hs.269471 NM_022080 ENSG00000125814 NAPB SNAP-BETA|SNAPB NSF attachment protein beta protein-coding 211-280 chr7 95662970 95663174 + 2 NA Intergenic L1MEd|LINE|L1 -66556 NM_002612 5166 Hs.8364 NM_002612 ENSG00000004799 PDK4 - pyruvate dehydrogenase kinase 4 protein-coding 221-83 chr14 57335626 57335823 + 2 NA Intergenic L1MEf|LINE|L1 -54862 NM_001011713 122830 Hs.165465 NM_001011713 ENSG00000139977 NAA30 C14orf35|MAK3|Mak3p|NAT12|NAT12P N(alpha)-acetyltransferase 30, NatC catalytic subunit protein-coding 495-18 chr1 221912836 221913231 + 2 NA TTS (NR_149057) TTS (NR_149057) -53377 NR_149071 110806276 NR_149071 LINC02474 - long intergenic non-protein coding RNA 2474 ncRNA 141-53 chr3 49810985 49811093 + 2 NA exon (NM_003335, exon 10 of 24) exon (NM_003335, exon 10 of 24) 2914 NM_003335 7318 Hs.16695 NM_003335 ENSG00000182179 UBA7 D8|UBA1B|UBE1L|UBE2 ubiquitin like modifier activating enzyme 7 protein-coding 449-262 chr7 125302071 125302484 + 2 NA intron (NR_110188, intron 3 of 8) intron (NR_110188, intron 3 of 8) -37986 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 235-120 chr15 97565381 97565531 + 2 NA Intergenic MIR|SINE|MIR -4758 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 121-46 chr4 17943888 17943979 + 2 NA intron (NR_158563, intron 4 of 5) intron (NR_158563, intron 4 of 5) 77822 NR_136669 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 786-11 chr10 119380012 119380514 + 2 NA intron (NM_005308, intron 2 of 15) MLT1K|LTR|ERVL-MaLR 2291 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 266-74 chr11 112968225 112968391 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -4848 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 312-103 chr12 34595088 34595250 + 2 NA Intergenic ALR/Alpha|Satellite|centr 572673 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 198-139 chr2 175750124 175750251 + 2 NA Intergenic Intergenic 252080 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 573-8 chr1 106661798 106662182 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -156249 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 533-128 chr22 47442059 47442381 + 2 NA Intergenic Intergenic 44891 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 471-259 chr8 6229754 6230063 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 176640 NR_040040 100287015 Hs.156928 NR_040040 ENSG00000246089 LOC100287015 - uncharacterized LOC100287015 ncRNA 495-196 chr5 31129766 31130089 + 2 NA Intergenic AluSz|SINE|Alu -63759 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 475-255 chr7 20470314 20470729 + 2 NA Intergenic Intergenic -138759 NR_110119 101927811 Hs.285724 NR_110119 ENSG00000271133 LOC101927811 - uncharacterized LOC101927811 ncRNA 283-157 chr16 17050574 17050824 + 2 NA Intergenic L1PA16|LINE|L1 -83805 NR_135179 102723692 Hs.737758 NR_135179 ENSG00000261448 LOC102723692 - uncharacterized LOC102723692 ncRNA 298-7 chr1 80640036 80640315 + 2 NA intron (NR_125940, intron 2 of 3) intron (NR_125940, intron 2 of 3) -1112 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 472-178 chr2 207028081 207028434 + 2 NA Intergenic L1MA5|LINE|L1 81816 NR_036227 100423036 NR_036227 ENSG00000253008 MIR2355 mir-2355 microRNA 2355 ncRNA 240-248 chr2 197857399 197857574 + 2 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 52893 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 277-417 chr8 92164988 92165160 + 2 NA Intergenic Intergenic -61689 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 355-441 chr6 130767122 130767429 + 2 NA Intergenic Intergenic -60130 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 461-55 chr11 114479790 114480095 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 40475 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 728-69 chr5 11289242 11289847 + 2 NA intron (NM_001288715, intron 8 of 20) intron (NM_001288715, intron 8 of 20) 299373 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 369-395 chr8 26545219 26545554 + 2 NA intron (NM_001197293, intron 1 of 13) L1M3c|LINE|L1 31355 NM_001197293 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 219-72 chr12 61237875 61238079 + 2 NA Intergenic L1MA1|LINE|L1 954862 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 684-25 chr12 30560270 30560852 + 2 NA Intergenic L1M4c|LINE|L1 116683 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 578-104 chr20 46981790 46982231 + 2 NA intron (NM_172110, intron 1 of 13) L1MEg|LINE|L1 87167 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 157-38 chr14 54096949 54097083 + 2 NA Intergenic L1MB8|LINE|L1 -140125 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 291-177 chr17 70252220 70252434 + 2 NA Intergenic L2c|LINE|L2 82792 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 228-127 chr17 3190322 3190531 + 2 NA Intergenic Intergenic -7091 NM_012352 26189 Hs.532660 NM_012352 ENSG00000172150 OR1A2 OR17-6 olfactory receptor family 1 subfamily A member 2 protein-coding 143-78 chr7 52134785 52134877 + 2 NA Intergenic Intergenic -741575 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 424-98 chr17 58966050 58966382 + 2 NA intron (NM_014906, intron 3 of 6) L1ME4b|LINE|L1 140664 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 227-314 chr6 102829264 102829448 + 2 NA Intergenic Intergenic 1430371 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 122-51 chr7 85803793 85803865 + 2 NA Intergenic Intergenic 382707 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 449-73 chr14 33662200 33662523 + 2 NA intron (NM_001165893, intron 4 of 10) intron (NM_001165893, intron 4 of 10) -46576 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 298-197 chr2 13739487 13739653 + 2 NA Intergenic Intergenic 661388 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 387-257 chr4 117853961 117854220 + 2 NA intron (NR_147154, intron 1 of 1) L1MA4A|LINE|L1 19689 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 392-176 chr20 42015192 42015542 + 2 NA Intergenic Intergenic -396990 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 252-422 chr8 90825188 90825342 + 2 NA intron (NM_022351, intron 3 of 12) intron (NM_022351, intron 3 of 12) 33490 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 376-127 chr15 100142966 100143278 + 2 NA intron (NM_139057, intron 10 of 21) intron (NM_139057, intron 10 of 21) 198853 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 309-164 chr14 87382764 87383001 + 2 NA Intergenic Intergenic 272412 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 328-143 chr14 44088708 44088884 + 2 NA Intergenic L1PA16|LINE|L1 418487 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 489-51 chr12 37874880 37875341 + 2 NA Intergenic ALR/Alpha|Satellite|centr -441664 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 249-115 chr14 46249765 46249991 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 185719 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 131-32 chr17 3448129 3448235 + 2 NA intron (NM_001321336, intron 6 of 8) L2a|LINE|L2 -14341 NM_003554 8388 Hs.533931 NM_003554 ENSG00000127780 OR1E2 OR17-135|OR17-136|OR17-93|OR1E4|OR1E7|OST529 olfactory receptor family 1 subfamily E member 2 protein-coding 356-117 chr12 118780321 118780508 + 2 NA Intergenic MIRb|SINE|MIR -18735 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 235-383 chr9 28983564 28983781 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) -94717 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 213-208 chr4 77080516 77080672 + 2 NA Intergenic Intergenic -4605 NM_006835 10983 Hs.518827 NM_006835 ENSG00000118816 CCNI CCNI1|CYC1|CYI cyclin I protein-coding 400-32 chr10 33842871 33843126 + 2 NA Intergenic Intergenic -70318 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 358-6 chr1 49251674 49251968 + 2 NA intron (NR_136623, intron 2 of 12) L1PA13|LINE|L1 -5590 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 499-224 chr6 64987335 64987683 + 2 NA intron (NM_001292009, intron 14 of 43) MER5B|DNA|hAT-Charlie -313909 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 169-86 chr4 57108983 57109109 + 2 NA promoter-TSS (NR_034081) promoter-TSS (NR_034081) -716 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 378-287 chr3 88580340 88580622 + 2 NA Intergenic Intergenic 242025 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 257-275 chr3 112928328 112928570 + 2 NA TTS (NM_138939) TTS (NM_138939) 46654 NM_138940 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 240-347 chr5 30771603 30771793 + 2 NA Intergenic Intergenic -421988 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 272-197 chr2 79671676 79671828 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -22393 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 425-97 chr15 57234584 57234915 + 2 NA intron (NM_207038, intron 12 of 19) intron (NM_207038, intron 12 of 19) 15319 NM_001306220 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 339-57 chr10 32481610 32481805 + 2 NA intron (NR_109826, intron 9 of 16) L1M4c|LINE|L1 35567 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 523-250 chr6 141411959 141412260 + 2 NA Intergenic L1ME2|LINE|L1 676690 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 466-18 chr1 211434963 211435420 + 2 NA Intergenic Intergenic 52436 NR_026761 84791 Hs.523932 NM_032705 LINC00467 C1orf97 long intergenic non-protein coding RNA 467 ncRNA 341-202 chr18 4765245 4765455 + 2 NA Intergenic L1PREC2|LINE|L1 -310043 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 456-279 chr6 78393039 78393388 + 2 NA Intergenic Intergenic 146096 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 230-261 chr4 56744604 56744753 + 2 NA Intergenic Intergenic -62972 NM_001145460 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 380-398 chr8 87356532 87356777 + 2 NA intron (NM_173538, intron 10 of 10) MSTB-int|LTR|ERVL-MaLR 490239 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 485-92 chr15 92580196 92580649 + 2 NA Intergenic Intergenic -8159 NR_021493 100144604 Hs.245476 NR_021493 ENSG00000258647 LINC00930 - long intergenic non-protein coding RNA 930 ncRNA 313-479 chr6 139593376 139593557 + 2 NA Intergenic Intergenic -118870 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 294-154 chr16 63085735 63085958 + 2 NA Intergenic Intergenic -1049408 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 216-307 chr6 78910288 78910499 + 2 NA Intergenic Intergenic 42842 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 641-99 chr6 164479273 164479774 + 2 NA Intergenic Intergenic 342540 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 316-585 chr9 80541724 80541926 + 2 NA Intergenic Intergenic 566802 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 275-334 chr7 52662926 52663094 + 2 NA Intergenic Intergenic -372623 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 549-195 chr7 63951981 63952367 + 2 NA Intergenic LTR32|LTR|ERVL -46632 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 494-98 chr17 78351393 78351850 + 2 NA Intergenic Intergenic 8458 NM_003955 9021 Hs.527973 NM_003955 ENSG00000184557 SOCS3 ATOD4|CIS3|Cish3|SOCS-3|SSI-3|SSI3 suppressor of cytokine signaling 3 protein-coding 451-31 chr10 114296386 114296790 + 2 NA intron (NM_001001936, intron 18 of 18) MIR3|SINE|MIR 56974 NM_001320804 340706 Hs.197741 NM_198496 ENSG00000165816 VWA2 AMACO|CCSP-2|CCSP2|NET42 von Willebrand factor A domain containing 2 protein-coding 283-465 chr9 92684998 92685201 + 2 NA Intergenic L1ME2|LINE|L1 -14968 NM_022755 64768 Hs.459896 NM_022755 ENSG00000127080 IPPK C9orf12|INSP5K2|IP5K|IPK1|bA476B13.1 inositol-pentakisphosphate 2-kinase protein-coding 392-208 chr3 101327835 101328157 + 2 NA intron (NM_020654, intron 22 of 23) intron (NM_020654, intron 22 of 23) -7421 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 649-26 chr14 81311783 81312369 + 2 NA intron (NM_001366850, intron 5 of 7) intron (NM_001366850, intron 5 of 7) -90686 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 313-502 chr7 62988540 62988851 + 2 NA Intergenic ALR/Alpha|Satellite|centr 315361 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 432-182 chr3 98012328 98012671 + 2 NA non-coding (NR_047685, exon 5 of 10) non-coding (NR_047685, exon 5 of 10) 22805 NM_001105580 200959 Hs.534578 NM_001105580 ENSG00000183185 GABRR3 - gamma-aminobutyric acid type A receptor rho3 subunit (gene/pseudogene) protein-coding 311-337 chr3 44661011 44661273 + 2 NA TTS (NM_003420) TTS (NM_003420) 12410 NM_003420 7584 Hs.288658 NM_003420 ENSG00000169981 ZNF35 HF.10|HF10|Zfp105 zinc finger protein 35 protein-coding 318-301 chr2 198960252 198960496 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 497565 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 397-316 chr7 131010421 131010731 + 2 NA intron (NR_109850, intron 3 of 5) intron (NR_109850, intron 3 of 5) 96454 NR_024153 378805 Hs.150556 NM_001085379 ENSG00000231721 LINC-PINT LincRNA-Pint|MKLN1-AS1|PINT long intergenic non-protein coding RNA, p53 induced transcript ncRNA 159-80 chr6 39071508 39071629 + 2 NA intron (NR_136563, intron 5 of 13) L1ME3C|LINE|L1 -2746 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 680-61 chr2 111706166 111706725 + 2 NA Intergenic Intergenic 64689 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 300-374 chr5 153932739 153932966 + 2 NA Intergenic Intergenic -33865 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 228-248 chr4 83836902 83837123 + 2 NA Intergenic L1ME4a|LINE|L1 300904 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 277-41 chr10 18759949 18760105 + 2 NA Intergenic L2a|LINE|L2 100596 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 397-355 chr9 36839843 36840068 + 2 NA non-coding (NR_104000, exon 10 of 10) non-coding (NR_104000, exon 10 of 10) -16356 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 524-179 chr4 74984033 74984427 + 2 NA intron (NM_015393, intron 1 of 3) intron (NM_015393, intron 1 of 3) -13868 NR_121617 100507388 Hs.570765 NR_121617 ENSG00000249717 LOC100507388 - uncharacterized LOC100507388 ncRNA 344-144 chr14 83488251 83488537 + 2 NA Intergenic Intergenic 845762 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 271 chr1 5289034 5289196 + 2 NA Intergenic Intergenic 573626 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 353-81 chr11 40498781 40499030 + 2 NA intron (NM_020929, intron 2 of 4) intron (NM_020929, intron 2 of 4) -205775 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 249-178 chr19 49260424 49260606 + 2 NA Intergenic L1MB5|LINE|L1 48353 NR_036209 100422979 NR_036209 ENSG00000265407 MIR4324 mir-4324 microRNA 4324 ncRNA 570-179 chr7 52318197 52318666 + 2 NA Intergenic Intergenic -717202 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 341-134 chr13 53752359 53752558 + 2 NA Intergenic Intergenic -62961 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 243-203 chr2 48132305 48132498 + 2 NA Intergenic Intergenic -182281 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 275-344 chr7 101193767 101193956 + 2 NA Intergenic LTR78|LTR|ERV1 7175 NM_178176 346606 Hs.512217 NM_178176 ENSG00000106384 MOGAT3 DC7|DGAT2L2|MGAT3 monoacylglycerol O-acyltransferase 3 protein-coding 525-279 chr9 71157716 71158071 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) -36272 NM_001366151 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 191-46 chr13 54981711 54981820 + 2 NA Intergenic Intergenic -192689 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 414-114 chr17 11426373 11426680 + 2 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -171944 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 312-40 chr10 44733563 44733731 + 2 NA Intergenic Intergenic -177669 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 296-231 chr2 105618738 105618997 + 2 NA Intergenic Intergenic -8308 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 260-27 chr1 192719906 192720131 + 2 NA Intergenic L1M1|LINE|L1 3690 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 189-143 chr4 46066148 46066300 + 2 NA intron (NM_173536, intron 3 of 8) intron (NM_173536, intron 3 of 8) 57830 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 435-220 chr6 91968904 91969322 + 2 NA Intergenic Intergenic -278685 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 477-90 chr14 66136751 66137079 + 2 NA Intergenic Intergenic -349456 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 249-317 chr5 5314456 5314627 + 2 NA intron (NM_139056, intron 21 of 22) intron (NM_139056, intron 21 of 22) -108136 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 397-234 chr4 121700704 121700973 + 2 NA Intergenic MIR|SINE|MIR -3858 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 254-372 chr7 26685309 26685459 + 2 NA intron (NM_003930, intron 10 of 12) intron (NM_003930, intron 10 of 12) 47513 NR_161202 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 322-525 chr8 81861288 81861563 + 2 NA Intergenic Intergenic -19139 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 324-500 chr7 71875417 71875729 + 2 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 461818 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 211-278 chr7 80927440 80927583 + 2 NA Intergenic Intergenic -5122 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 181-174 chrX 154826606 154826765 + 2 NA intron (NM_001162936, intron 4 of 4) L1M7|LINE|L1 7977 NM_001162936 100132963 Hs.220762 NM_001162936 ENSG00000203870 SMIM9 CXorf68 small integral membrane protein 9 protein-coding 483-18 chr1 222081105 222081578 + 2 NA Intergenic HAL1M8|LINE|L1 -102821 NR_149057 105372950 Hs.185118 NR_149057 ENSG00000238042 LINC02257 - long intergenic non-protein coding RNA 2257 ncRNA 339-507 chr6 146145690 146145902 + 2 NA intron (NM_001278065, intron 2 of 9) MSTC-int|LTR|ERVL-MaLR 116598 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 500-100 chr15 94887401 94887867 + 2 NA Intergenic Intergenic 32271 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 307-149 chr14 78368847 78369084 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -34754 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 314-136 chr12 106803749 106804007 + 2 NA intron (NM_001351364, intron 3 of 11) intron (NM_001351364, intron 3 of 11) -29047 NR_040246 100287944 Hs.742087 NR_040246 ENSG00000257545 LOC100287944 - uncharacterized LOC100287944 ncRNA 248-143 chr16 75162585 75162735 + 2 NA intron (NM_001318471, intron 3 of 4) L1PA16|LINE|L1 13609 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 371-366 chr7 78861982 78862269 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -146863 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 496-230 chr6 20297706 20297956 + 2 NA Intergenic L1MA4|LINE|L1 -85362 NR_073465 154141 Hs.377830 NM_001080480 ENSG00000172197 MBOAT1 LPEAT1|LPLAT|LPLAT 1|LPSAT|OACT1|dJ434O11.1 membrane bound O-acyltransferase domain containing 1 protein-coding 422-317 chrX 78219956 78220173 + 2 NA Intergenic L1M4c|LINE|L1 -80414 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 147-14 chr12 43801534 43801614 + 2 NA intron (NR_073472, intron 3 of 8) intron (NR_073472, intron 3 of 8) 4743 NM_002822 5756 Hs.189075 NM_002822 ENSG00000151239 TWF1 A6|PTK9 twinfilin actin binding protein 1 protein-coding 343-484 chr6 128935628 128935954 + 2 NA intron (NM_000426, intron 1 of 64) L1MA9|LINE|L1 52650 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 240-275 chr22 32658998 32659224 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) -141705 NM_000362 7078 Hs.644633 NM_000362 ENSG00000100234 TIMP3 HSMRK222|K222|K222TA2|SFD TIMP metallopeptidase inhibitor 3 protein-coding 138-15 chr12 126004214 126004327 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -20896 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 182-57 chr14 79910628 79910800 + 2 NA Intergenic MIR|SINE|MIR -300705 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 281-28 chr1 234569517 234569791 + 2 NA Intergenic Intergenic -37875 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 263-318 chr5 26615594 26615812 + 2 NA Intergenic Intergenic 422883 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 181-138 chr6 40635827 40635970 + 2 NA Intergenic MIRc|SINE|MIR -48534 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 333-372 chr3 177356504 177356771 + 2 NA Intergenic L2a|LINE|L2 62195 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 534-224 chr6 124715796 124716130 + 2 NA intron (NM_001040214, intron 4 of 6) intron (NM_001040214, intron 4 of 6) -246582 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 181-101 chr4 36253583 36253757 + 2 NA intron (NR_122079, intron 3 of 4) intron (NR_122079, intron 3 of 4) -2848 NR_122080 439933 Hs.591071 NR_122079 ENSG00000247193 LOC439933 - uncharacterized LOC439933 ncRNA 456-57 chr12 27507698 27508112 + 2 NA Intergenic Intergenic -16301 NM_177444 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 306-96 chr11 130288946 130289187 + 2 NA intron (NR_163265, intron 1 of 7) intron (NR_163265, intron 1 of 7) 25646 NM_014155 29068 Hs.721470 NM_014155 ENSG00000196323 ZBTB44 BTBD15|HSPC063|ZNF851 zinc finger and BTB domain containing 44 protein-coding 293-24 chr1 240168683 240168904 + 2 NA intron (NM_020066, intron 2 of 17) intron (NM_020066, intron 2 of 17) 76910 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 681-59 chr4 84566557 84567054 + 2 NA Intergenic Intergenic -16322 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 346-8 chr1 81346120 81346325 + 2 NA intron (NM_001366003, intron 2 of 27) intron (NM_001366003, intron 2 of 27) 39827 NM_001366008 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 365-425 chr9 79013501 79013743 + 2 NA Intergenic Intergenic 132044 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 246-443 chrX 125735359 125735543 + 2 NA Intergenic L1MA3|LINE|L1 -374311 NR_110409 101928495 Hs.545998 NR_110409 ENSG00000237208 LOC101928495 - uncharacterized LOC101928495 ncRNA 172-101 chr5 39497913 39498046 + 2 NA Intergenic MIR|SINE|MIR -22452 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 729-38 chr2 81861838 81862230 + 2 NA Intergenic Intergenic -395088 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 346-522 chr9 35930371 35930569 + 2 NA Intergenic Intergenic 20980 NM_001348107 158376 Hs.302677 NM_001348107 ENSG00000235387 SPAAR LINC00961|SPAR small regulatory polypeptide of amino acid response protein-coding 226-350 chr8 98978000 98978191 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 33653 NM_001142462 116039 Hs.253247 NM_053001 ENSG00000164920 OSR2 - odd-skipped related transciption factor 2 protein-coding 294-447 chr7 117936303 117936547 + 2 NA Intergenic Intergenic -62984 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 302-250 chr20 51158624 51158835 + 2 NA Intergenic Intergenic -135622 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 294-512 chrX 13300370 13300537 + 2 NA intron (NR_146309, intron 1 of 1) L1MC2|LINE|L1 2999 NR_146309 109729169 Hs.348675 NR_146309 LINC02154 - long intergenic non-protein coding RNA 2154 ncRNA 192-143 chr4 43290189 43290319 + 2 NA Intergenic Intergenic 202289 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 218-297 chr7 8318374 8318580 + 2 NA intron (NR_125740, intron 3 of 5) LTR23|LTR|ERV1 -55865 NM_004968 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 272-339 chr5 41668815 41669003 + 2 NA Intergenic L2a|LINE|L2 -158308 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 288-468 chr9 28080210 28080441 + 2 NA intron (NM_152570, intron 5 of 6) L2a|LINE|L2 -506459 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 168-87 chr5 22765481 22765604 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 87802 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 440-153 chr3 2730315 2730686 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -161715 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 173-80 chr2 234439380 234439484 + 2 NA Intergenic Intergenic 15163 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 344-200 chr18 11346782 11347052 + 2 NA Intergenic L1MCa|LINE|L1 -107561 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 368-27 chr1 176182679 176182910 + 2 NA intron (NM_022457, intron 2 of 19) MamRTE1|LINE|RTE-BovB 24450 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 399-83 chr14 43280590 43280816 + 2 NA Intergenic L1M7|LINE|L1 1226580 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 514-126 chr18 47645741 47646128 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie 265438 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 201-91 chr15 91469827 91469927 + 2 NA intron (NR_110106, intron 1 of 3) MIRb|SINE|MIR 6538 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 505-322 chr9 25463439 25463794 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 215242 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 277-338 chr5 162357521 162357794 + 2 NA Intergenic L1MA4|LINE|L1 290015 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 390-183 chr2 66698280 66698655 + 2 NA intron (NR_110265, intron 2 of 2) intron (NR_110265, intron 2 of 2) 4760 NR_110265 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 445-116 chr2 31762114 31762407 + 2 NA Intergenic Intergenic 41720 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 431-211 chr4 110206910 110207256 + 2 NA Intergenic Intergenic -8468 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 246-158 chr17 68649201 68649359 + 2 NA intron (NR_110825, intron 2 of 4) L1ME3B|LINE|L1 21126 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 672-104 chr7 62750975 62751580 + 2 NA Intergenic ALR/Alpha|Satellite|centr 552779 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 212-154 chr2 79264100 79264266 + 2 NA Intergenic Intergenic -104430 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 243-133 chr14 81231717 81231938 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -10437 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 370-244 chr2 133233146 133233358 + 2 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -32943 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 446-294 chr8 34602305 34602713 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger -181412 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 455-20 chr1 234451878 234452206 + 2 NA intron (NM_005646, intron 9 of 29) intron (NM_005646, intron 9 of 29) 27137 NM_005646 6894 Hs.498115 NM_005646 ENSG00000059588 TARBP1 TRM3|TRMT3|TRP-185|TRP185 TAR (HIV-1) RNA binding protein 1 protein-coding 133-10 chr10 115374190 115374272 + 2 NA intron (NM_207303, intron 19 of 28) L1MA7|LINE|L1 280866 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 359-429 chr6 95433719 95433913 + 2 NA Intergenic Intergenic 143635 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 337-47 chr10 44198082 44198378 + 2 NA Intergenic Intergenic -94520 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 194-199 chr7 49929875 49930058 + 2 NA Intergenic Intergenic 154633 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 246-364 chr7 31397962 31398127 + 2 NA Intergenic Intergenic -57318 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 287-433 chr9 35141272 35141486 + 2 NA Intergenic MER52-int|LTR|ERV1 -20630 NM_001371189 395-158 chr2 22448731 22449104 + 2 NA Intergenic L1ME3D|LINE|L1 -87562 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 499-104 chr19 37606928 37607317 + 2 NA intron (NM_001172225, intron 4 of 4) intron (NM_001172225, intron 4 of 4) 12246 NM_001172226 163255 Hs.728927 NM_152606 ENSG00000171817 ZNF540 Nbla10512 zinc finger protein 540 protein-coding 280-294 chr4 91500185 91500368 + 2 NA intron (NM_001145065, intron 10 of 10) L1MC|LINE|L1 777026 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 466-15 chr1 187183753 187184127 + 2 NA intron (NR_126347, intron 1 of 3) L1ME4b|LINE|L1 91098 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 318-409 chr4 98840318 98840490 + 2 NA Intergenic L1MEf|LINE|L1 88729 NM_001130678 1977 Hs.13211 NM_001968 ENSG00000151247 EIF4E AUTS19|CBP|EIF4E1|EIF4EL1|EIF4F|eIF-4E eukaryotic translation initiation factor 4E protein-coding 184-147 chr6 155931116 155931290 + 2 NA Intergenic L1M5|LINE|L1 -15594 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 309-191 chr16 62944218 62944437 + 2 NA Intergenic Intergenic -907889 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 321-431 chr4 105174017 105174226 + 2 NA intron (NR_126420, intron 3 of 5) intron (NR_126420, intron 3 of 5) 27436 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 122-11 chr12 26025885 26025974 + 2 NA intron (NM_001164747, intron 2 of 5) L1MB8|LINE|L1 -26635 NM_001164746 11228 Hs.696433 NM_007211 ENSG00000123094 RASSF8 C12orf2|HOJ1 Ras association domain family member 8 protein-coding 376-372 chr7 37647871 37648241 + 2 NA Intergenic Intergenic -35710 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 221-264 chr6 89585725 89585922 + 2 NA intron (NM_001242809, intron 2 of 15) AluSz6|SINE|Alu 18985 NM_001242814 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 400-204 chr22 34999373 34999753 + 2 NA Intergenic Intergenic -1647 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 475-144 chr2 136578168 136578598 + 2 NA Intergenic Intergenic -187162 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 276-159 chr14 101326389 101326602 + 2 NA Intergenic Intergenic 81427 NR_126006 338002 Hs.124848 NR_126006 ENSG00000259023 LINC00524 C14orf71 long intergenic non-protein coding RNA 524 ncRNA 288-233 chr20 59631027 59631196 + 2 NA intron (NM_001281507, intron 1 of 12) intron (NM_001281507, intron 1 of 12) 2502 NM_001281507 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 448-2 chr1 49594043 49594361 + 2 NA intron (NR_136623, intron 2 of 12) MER8|DNA|TcMar-Tigger -122117 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 321-560 chr8 88177567 88177863 + 2 NA intron (NM_005941, intron 3 of 9) L1MC2|LINE|L1 149768 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 171-6 chr1 69320285 69320427 + 2 NA Intergenic Intergenic -112899 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 512-231 chr5 153548521 153548972 + 2 NA intron (NM_001258020, intron 3 of 16) L1ME4a|LINE|L1 56574 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 240-210 chr2 51185882 51186117 + 2 NA intron (NR_135237, intron 2 of 10) L1ME3E|LINE|L1 153398 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 216-303 chr6 53000493 53000693 + 2 NA TTS (NM_016513) TTS (NM_016513) 4973 NR_001445 125050 NR_001445 ENSG00000202198 RN7SK 7SK RNA component of 7SK nuclear ribonucleoprotein snRNA 346-468 chr7 66265754 66266030 + 2 NA intron (NM_003596, intron 2 of 5) L1M4|LINE|L1 60558 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 345-303 chr2 238540942 238541165 + 2 NA intron (NR_037809, intron 2 of 2) intron (NR_037809, intron 2 of 2) 14446 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 304-484 chr7 29024301 29024472 + 2 NA intron (NM_001371256, intron 16 of 16) L1MA4|LINE|L1 44419 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 742-54 chr3 95260275 95260920 + 2 NA Intergenic Intergenic 322334 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 121-71 chr9 31955279 31955375 + 2 NA Intergenic L1MA9|LINE|L1 -429276 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 188-172 chr5 145379509 145379663 + 2 NA Intergenic L1PA13|LINE|L1 455756 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 282-438 chr8 51019044 51019214 + 2 NA Intergenic Intergenic 790316 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 164-74 chr3 28005230 28005359 + 2 NA Intergenic Intergenic -171158 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 130-57 chr3 102055070 102055151 + 2 NA Intergenic Intergenic -108595 NR_135549 101929411 Hs.506540 NR_135549 LOC101929411 - uncharacterized LOC101929411 ncRNA 215-321 chr8 123195347 123195533 + 2 NA intron (NM_001288587, intron 2 of 3) L1MEi|LINE|L1 7303 NR_024479 100131726 Hs.660862 NR_024479 ENSG00000204949 FAM83A-AS1 HCCC11|HCCC11_v1|HCCC11_v2 FAM83A antisense RNA 1 ncRNA 338-489 chr7 17021128 17021432 + 2 NA Intergenic Intergenic -139297 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 324-238 chr19 27838223 27838506 + 2 NA intron (NR_146734, intron 1 of 7) ERVL-int|LTR|ERVL -44424 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 476-9 chr1 97890914 97891299 + 2 NA intron (NM_000110, intron 1 of 22) intron (NM_000110, intron 1 of 22) 29953 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 261-51 chr10 116919958 116920143 + 2 NA intron (NM_001127211, intron 12 of 16) intron (NM_001127211, intron 12 of 16) -70328 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 170-82 chr20 43992385 43992526 + 2 NA intron (NM_001098797, intron 2 of 8) intron (NM_001098797, intron 2 of 8) 46559 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 245-299 chr6 42294944 42295179 + 2 NA intron (NM_001297573, intron 4 of 17) intron (NM_001297573, intron 4 of 17) -77200 NM_018141 55173 Hs.380887 NM_018141 ENSG00000048544 MRPS10 MRP-S10|PNAS-122 mitochondrial ribosomal protein S10 protein-coding 265-67 chr11 121179106 121179270 + 2 NA intron (NM_005422, intron 19 of 22) L1MA4A|LINE|L1 76522 NM_005422 7007 Hs.248162 NM_005422 ENSG00000109927 TECTA DFNA12|DFNA8|DFNB21 tectorin alpha protein-coding 195-5 chr1 73271635 73271763 + 2 NA Intergenic L1ME2|LINE|L1 -34471 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 137-13 chr11 94046972 94047067 + 2 NA intron (NM_001098672, intron 2 of 19) MamRTE1|LINE|RTE-BovB 25665 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 382-260 chr3 29123735 29124063 + 2 NA Intergenic Intergenic 157040 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 284-255 chr3 23688815 23689069 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -117013 NM_003341 7324 Hs.164853 NM_003341 ENSG00000170142 UBE2E1 UBCH6 ubiquitin conjugating enzyme E2 E1 protein-coding 323-91 chr11 88386067 88386248 + 2 NA Intergenic L1MC4|LINE|L1 -48421 NM_001114173 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 405-329 chr8 113100268 113100666 + 2 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 276685 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 197-198 chr7 114165386 114165518 + 2 NA intron (NR_033766, intron 1 of 19) L1MC2|LINE|L1 79125 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 365-341 chr6 23495077 23495339 + 2 NA Intergenic Intergenic -631007 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 292-69 chr11 22015280 22015558 + 2 NA Intergenic L1PREC2|LINE|L1 -177666 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 651-98 chr5 58200605 58201088 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -78505 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 431-76 chr14 37166662 37166973 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -5209 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 282-404 chr6 78914471 78914722 + 2 NA Intergenic Intergenic 47045 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 365-298 chr4 103532768 103533114 + 2 NA Intergenic Intergenic 107899 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 385-111 chr15 57204373 57204750 + 2 NA intron (NM_207038, intron 8 of 19) intron (NM_207038, intron 8 of 19) -14869 NM_207040 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 304-147 chr14 68227785 68228081 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 400854 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 211-28 chr10 37789350 37789526 + 2 NA intron (NR_147992, intron 6 of 8) intron (NR_147992, intron 6 of 8) 5737 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 454-171 chr2 124640041 124640390 + 2 NA intron (NM_130773, intron 12 of 23) intron (NM_130773, intron 12 of 23) 614928 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 232-201 chr2 201543225 201543393 + 2 NA intron (NM_001168221, intron 11 of 15) L1MB1|LINE|L1 75869 NM_001168217 151254 Hs.335788 NM_152525 ENSG00000155754 C2CD6 ALS2CR11 C2 calcium dependent domain containing 6 protein-coding 355-461 chr7 47766584 47766903 + 2 NA TTS (NR_038407) TTS (NR_038407) 5267 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 218-85 chr13 96591733 96591896 + 2 NA intron (NM_153456, intron 1 of 1) L1MA3|LINE|L1 164585 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 295-42 chr10 21559066 21559283 + 2 NA intron (NM_001324297, intron 4 of 24) AluSg|SINE|Alu 25002 NM_001195630 8028 Hs.30385 NM_004641 ENSG00000078403 MLLT10 AF10 MLLT10 histone lysine methyltransferase DOT1L cofactor protein-coding 368-218 chr19 37499444 37499640 + 2 NA intron (NR_110723, intron 2 of 2) LTR62|LTR|ERVL -7397 NM_001013659 390927 Hs.568010 NM_001013659 ENSG00000188227 ZNF793 - zinc finger protein 793 protein-coding 158-78 chr3 160066164 160066285 + 2 NA intron (NR_108088, intron 3 of 9) L1ME4a|LINE|L1 45575 NR_104132 730109 Hs.99333 NR_104132 LINC01100 - long intergenic non-protein coding RNA 1100 ncRNA 301-491 chr9 137357082 137357326 + 2 NA intron (NM_017820, intron 7 of 21) HAL1|LINE|L1 -54933 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 201-129 chr2 169490956 169491118 + 2 NA intron (NM_152384, intron 5 of 11) L1MB7|LINE|L1 11543 NM_152384 129880 Hs.233398 NM_152384 ENSG00000163093 BBS5 - Bardet-Biedl syndrome 5 protein-coding 395-55 chr11 48867649 48867864 + 2 NA Intergenic ALR/Alpha|Satellite|centr -163844 NM_001206626 283116 Hs.448644 NM_001206626 ENSG00000182053 TRIM49B - tripartite motif containing 49B protein-coding 181-37 chr13 87067936 87068106 + 2 NA Intergenic Intergenic 156101 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 219-289 chr5 84955294 84955479 + 2 NA Intergenic Intergenic -570506 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 515-195 chr5 1722459 1722805 + 2 NA Intergenic L1PA3|LINE|L1 -13764 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 451-121 chr2 211704074 211704451 + 2 NA intron (NM_001042599, intron 10 of 26) intron (NM_001042599, intron 10 of 26) 722098 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 222-308 chr5 130160201 130160369 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 255820 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 379-195 chr20 59288108 59288430 + 2 NA Intergenic Intergenic -12342 NM_001302456 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 215-327 chr8 136313729 136313899 + 2 NA Intergenic Intergenic -216984 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 214-358 chrX 39582739 39582941 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -78376 NR_037501 100500822 NR_037501 ENSG00000263730 MIR3937 - microRNA 3937 ncRNA 240-191 chr18 42884990 42885187 + 2 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 230597 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 307-283 chr21 31385804 31385973 + 2 NA intron (NM_001353690, intron 1 of 27) intron (NM_001353690, intron 1 of 27) -41534 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 496-127 chr2 6843489 6843837 + 2 NA intron (NM_001256478, intron 3 of 3) HUERS-P3-int|LTR|ERV1 -3199 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 343-64 chr10 114974256 114974452 + 2 NA exon (NM_139169, exon 7 of 8) exon (NM_139169, exon 7 of 8) -20303 NR_120677 102724589 NR_120677 ENSG00000236799 LINC02626 - long intergenic non-protein coding RNA 2626 ncRNA 443-90 chr14 49606798 49607153 + 2 NA intron (NR_037792, intron 3 of 5) intron (NR_037792, intron 3 of 5) 8035 NM_152329 122769 Hs.451090 NM_152329 ENSG00000165501 LRR1 4-1BBLRR|LRR-1|PPIL5 leucine rich repeat protein 1 protein-coding 367-83 chr11 109779581 109779827 + 2 NA Intergenic Intergenic -313688 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 622-60 chr2 59200563 59201005 + 2 NA Intergenic Intergenic -16924 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 265-261 chr4 41770113 41770357 + 2 NA Intergenic L1ME3Cz|LINE|L1 -21265 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 318-120 chr11 124551979 124552183 + 2 NA Intergenic Intergenic -8427 NM_001005195 219858 Hs.553634 NM_001005195 ENSG00000170953 OR8B12 OR11-317 olfactory receptor family 8 subfamily B member 12 protein-coding 296-233 chr2 107093580 107093740 + 2 NA Intergenic Intergenic -206551 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 349-115 chr12 16100750 16101094 + 2 NA Intergenic Intergenic 176763 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 343-86 chr11 130694222 130694452 + 2 NA intron (NM_001271983, intron 1 of 2) intron (NM_001271983, intron 1 of 2) 21381 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 204-263 chr7 11374111 11374278 + 2 NA 3' UTR (NM_015204, exon 27 of 27) 3' UTR (NM_015204, exon 27 of 27) 400322 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 524-196 chr5 30248856 30249211 + 2 NA Intergenic Intergenic 368473 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 830-42 chr5 5611665 5612330 + 2 NA Intergenic Intergenic 189320 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 169-38 chr14 66038927 66039093 + 2 NA Intergenic Intergenic -447361 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 356-122 chr12 133200341 133200619 + 2 NA intron (NM_152943, intron 6 of 6) L1PA3|LINE|L1 18985 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 285-387 chr7 49747660 49747842 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -25887 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 217-167 chr2 12751381 12751555 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 14101 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 303-22 chr1 227618084 227618238 + 2 NA intron (NR_102302, intron 2 of 5) intron (NR_102302, intron 2 of 5) 54605 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 503-106 chr15 72045206 72045631 + 2 NA intron (NM_006901, intron 2 of 41) AluSp|SINE|Alu -68840 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 582-116 chr4 184525097 184525554 + 2 NA intron (NR_147158, intron 1 of 2) L1PA11|LINE|L1 12258 NR_147158 105377585 Hs.519127 NR_147158 ENSG00000271538 LINC02427 - long intergenic non-protein coding RNA 2427 ncRNA 544-193 chr6 54190242 54190652 + 2 NA intron (NM_001281746, intron 10 of 11) MER33|DNA|hAT-Charlie 79004 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 167-16 chr1 240914105 240914229 + 2 NA intron (NM_001282773, intron 4 of 15) intron (NM_001282773, intron 4 of 15) -218105 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 542-61 chr14 82959432 82959777 + 2 NA Intergenic Intergenic 316972 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 323-164 chr15 78295705 78296010 + 2 NA intron (NM_001303248, intron 1 of 8) intron (NM_001303248, intron 1 of 8) 3752 NM_001303248 80349 Hs.513055 NM_025234 ENSG00000140395 WDR61 REC14|SKI8 WD repeat domain 61 protein-coding 455-154 chr21 42625710 42626050 + 2 NA Intergenic Intergenic -10785 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 378-421 chr8 243047 243333 + 2 NA intron (NM_001042416, intron 3 of 5) intron (NM_001042416, intron 3 of 5) 10734 NM_001287254 169270 Hs.591388 NM_173539 ENSG00000172748 ZNF596 - zinc finger protein 596 protein-coding 245-229 chr3 60451978 60452169 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 165797 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 193-175 chr6 65362511 65362666 + 2 NA intron (NM_198283, intron 7 of 9) (AT)n|Simple_repeat|Simple_repeat 61170 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 162-130 chr8 64999097 64999223 + 2 NA Intergenic Intergenic 181180 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 282-205 chr2 62367693 62367968 + 2 NA Intergenic L1ME4a|LINE|L1 138365 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 335-439 chr5 136339718 136340026 + 2 NA intron (NM_020389, intron 2 of 11) (CAA)n|Simple_repeat|Simple_repeat 25604 NM_001167577 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 320-131 chr12 128635432 128635728 + 2 NA intron (NM_001136103, intron 4 of 8) intron (NM_001136103, intron 4 of 8) 188378 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 293-115 chr14 54908190 54908469 + 2 NA Intergenic L1M4|LINE|L1 -5503 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 352-43 chr10 52833587 52833822 + 2 NA Intergenic L1MA4|LINE|L1 -62004 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 595-99 chr20 4750810 4751372 + 2 NA Intergenic L2b|LINE|L2 -10423 NR_024268 149830 Hs.126516 NM_177549 ENSG00000180259 PRNT M8 prion locus lncRNA, testis expressed ncRNA 377-32 chr1 240364823 240365134 + 2 NA intron (NM_020066, intron 14 of 17) intron (NM_020066, intron 14 of 17) 247177 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 261-187 chr2 78891738 78891970 + 2 NA Intergenic L1M6|LINE|L1 -133848 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 355-260 chr2 160089931 160090183 + 2 NA Intergenic LTR9A1|LTR|ERV1 -27442 NM_007366 22925 Hs.410477 NM_007366 ENSG00000153246 PLA2R1 CLEC13C|PLA2-R|PLA2G1R|PLA2IR|PLA2R phospholipase A2 receptor 1 protein-coding 585-113 chr4 100703779 100704141 + 2 NA Intergenic Intergenic -28847 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 272-255 chr3 6294147 6294395 + 2 NA Intergenic Intergenic 511178 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 545-18 chr10 28917205 28917683 + 2 NA Intergenic Intergenic 71036 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 560-167 chr7 29397598 29397994 + 2 NA intron (NM_001293072, intron 4 of 12) intron (NM_001293072, intron 4 of 12) -81916 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 405-19 chr1 215507703 215507971 + 2 NA Intergenic L1MEd|LINE|L1 -59467 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 426-229 chr5 34856499 34856922 + 2 NA intron (NM_001317949, intron 4 of 10) intron (NM_001317949, intron 4 of 10) 17329 NM_001317949 153657 Hs.435742 NM_144725 ENSG00000205838 TTC23L MC25-1 tetratricopeptide repeat domain 23 like protein-coding 178-161 chrX 70110456 70110564 + 2 NA Intergenic LTR49-int|LTR|ERV1 -22937 NM_001370193 3476 Hs.496267 NM_001551 ENSG00000089289 IGBP1 ALPHA-4|IBP1 immunoglobulin binding protein 1 protein-coding 253-393 chr7 103623086 103623290 + 2 NA intron (NM_005045, intron 20 of 64) intron (NM_005045, intron 20 of 64) -176981 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 284-16 chr1 119698659 119698899 + 2 NA Intergenic Intergenic -13155 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 328-21 chr1 167711484 167711703 + 2 NA Intergenic Intergenic -10389 NM_001146191 9019 Hs.493919 NM_003953 ENSG00000197965 MPZL1 MPZL1b|PZR|PZR1b|PZRa|PZRb myelin protein zero like 1 protein-coding 512-113 chr2 6020759 6021240 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 39021 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 174-58 chr19 46738521 46738643 + 2 NA intron (NM_001039877, intron 2 of 17) intron (NM_001039877, intron 2 of 17) -7475 NM_001039885 79147 Hs.515493 NM_024301 ENSG00000181027 FKRP LGMD2I|LGMDR9|MDC1C|MDDGA5|MDDGB5|MDDGC5 fukutin related protein protein-coding 398-243 chr4 85319446 85319792 + 2 NA Intergenic MER61-int|LTR|ERV1 -155531 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 232-159 chr2 16766133 16766313 + 2 NA Intergenic Intergenic -100389 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 455-277 chr8 85955617 85955910 + 2 NA Intergenic L1ME3G|LINE|L1 113905 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 212-26 chr1 247910265 247910415 + 2 NA Intergenic SATR1|Satellite|Satellite -10678 NM_001005522 343172 Hs.521114 NM_001005522 ENSG00000177462 OR2T8 OR2T8P olfactory receptor family 2 subfamily T member 8 protein-coding 434-260 chr7 47051793 47052218 + 2 NA Intergenic L1MD2|LINE|L1 -354883 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 337-110 chr12 23499138 23499326 + 2 NA Intergenic Intergenic 85354 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 414-310 chr7 67854855 67855119 + 2 NA Intergenic Intergenic -165266 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 694-119 chr7 13584813 13585235 + 2 NA Intergenic Intergenic 401490 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 537-39 chr11 37802898 37803369 + 2 NA Intergenic Intergenic -135468 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 266-116 chr14 59675923 59676156 + 2 NA intron (NM_021136, intron 3 of 8) L2a|LINE|L2 -29019 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 469-283 chr8 86032924 86033337 + 2 NA Intergenic Intergenic 36538 NM_033126 85481 Hs.566854 NM_033126 ENSG00000147613 PSKH2 - protein serine kinase H2 protein-coding 179-12 chr11 60723482 60723654 + 2 NA promoter-TSS (NM_001354471) promoter-TSS (NM_001354471) -441 NM_001354471 728588 Hs.739039 NM_001310141 ENSG00000214782 MS4A18 - membrane spanning 4-domains A18 protein-coding 241-134 chr16 72196307 72196514 + 2 NA Intergenic Intergenic -23960 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 437-66 chr13 110085311 110085607 + 2 NA Intergenic L1MA4|LINE|L1 32174 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 578-103 chr20 41575802 41576200 + 2 NA intron (NM_032221, intron 1 of 36) intron (NM_032221, intron 1 of 36) 42376 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 195-134 chr22 29299193 29299320 + 2 NA exon (NM_001163286, exon 14 of 16) exon (NM_001163286, exon 14 of 16) -7767 NM_152236 10634 Hs.322852 NM_006478 ENSG00000185340 GAS2L1 GAR22 growth arrest specific 2 like 1 protein-coding 185-218 chrX 79459313 79459445 + 2 NA Intergenic MER4-int|LTR|ERV1 -91827 NM_001171581 9452 Hs.17109 NM_004867 ENSG00000078596 ITM2A BRICD2A|E25A integral membrane protein 2A protein-coding 121-73 chr9 91299957 91300038 + 2 NA intron (NM_001306190, intron 3 of 8) L2c|LINE|L2 61927 NM_001698 549 Hs.175905 NM_001698 ENSG00000148090 AUH - AU RNA binding methylglutaconyl-CoA hydratase protein-coding 456-327 chr8 123323412 123323667 + 2 NA intron (NM_014109, intron 26 of 27) intron (NM_014109, intron 26 of 27) -24495 NR_037516 100500863 NR_037516 ENSG00000207704 MIR548AA1 - microRNA 548aa-1 ncRNA 307-258 chr2 178765785 178766012 + 2 NA intron (NM_133379, intron 41 of 45) intron (NM_133379, intron 41 of 45) -11028 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 436-207 chr4 58148221 58148580 + 2 NA Intergenic L1M4|LINE|L1 387928 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 627-101 chr6 54505416 54505977 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 197255 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 205-151 chr2 149475450 149475583 + 2 NA Intergenic Intergenic -111842 NR_110240 101929231 Hs.5324 NR_110240 ENSG00000231969 LOC101929231 - uncharacterized LOC101929231 ncRNA 256-12 chr1 79453003 79453165 + 2 NA Intergenic Intergenic -446354 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 237-370 chr8 52518455 52518663 + 2 NA Intergenic Intergenic 46871 NM_207413 389658 Hs.527111 NM_207413 ENSG00000196711 ALKAL1 AUGA|AUGB|FAM150A|UNQ9433 ALK and LTK ligand 1 protein-coding 242-180 chr2 62224032 62224225 + 2 NA 3' UTR (NM_001319075, exon 2 of 2) 3' UTR (NM_001319075, exon 2 of 2) 8607 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 593-11 chr10 24282240 24282668 + 2 NA intron (NM_019590, intron 2 of 20) L1PA17|LINE|L1 6769 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 521-157 chr3 14612077 14612440 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -39488 NR_135523 51244 Hs.517820 NM_016474 ENSG00000154781 CCDC174 C3orf19|HSPC212|IHPM|IHPMR coiled-coil domain containing 174 protein-coding 368-269 chr20 57956776 57957007 + 2 NA Intergenic Intergenic -47013 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 293-192 chr2 88841234 88841446 + 2 NA Intergenic Intergenic 28970 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 608-45 chr15 35817709 35818226 + 2 NA intron (NR_038251, intron 2 of 2) L4_B_Mam|LINE|RTE-X -108889 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 457-163 chr3 132224358 132224700 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -92878 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 554-142 chr21 34189170 34189612 + 2 NA non-coding (NR_027266, exon 2 of 2) non-coding (NR_027266, exon 2 of 2) 8714 NR_027266 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 546-103 chr2 69888903 69889267 + 2 NA Intergenic MER1B|DNA|hAT-Charlie -4871 NR_037862 11017 Hs.54649 NM_006857 ENSG00000124380 SNRNP27 27K|RY1 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 protein-coding 343-115 chr12 125613376 125613547 + 2 NA intron (NM_052907, intron 5 of 8) L1MB7|LINE|L1 -8991 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 328-275 chr2 115030149 115030355 + 2 NA intron (NM_001321910, intron 2 of 26) L1MEc|LINE|L1 -34321 NM_001178037 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 360-59 chr10 130339602 130339930 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 203357 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 370-94 chr11 86865035 86865263 + 2 NA intron (NR_120592, intron 2 of 2) intron (NR_120592, intron 2 of 2) -7195 NR_045004 8587 Hs.741959 NR_045004 ENSG00000255203 OR7E2P OR11-6|OR7E143P|OR7E51P|OR7E52P|OR7F2P|OST245|hg94 olfactory receptor family 7 subfamily E member 2 pseudogene pseudo 532-88 chr16 65442924 65443328 + 2 NA intron (NR_027755, intron 2 of 8) HAL1|LINE|L1 133174 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 271-340 chr5 40627475 40627714 + 2 NA Intergenic Intergenic -52321 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 327-240 chr2 20885906 20886183 + 2 NA Intergenic L2b|LINE|L2 -62914 NM_001282719 60526 Hs.187823 NM_021925 ENSG00000118961 LDAH C2orf43|hLDAH lipid droplet associated hydrolase protein-coding 219-279 chr5 54936361 54936534 + 2 NA Intergenic Intergenic 49146 NM_007036 11082 Hs.129944 NM_007036 ENSG00000164283 ESM1 endocan endothelial cell specific molecule 1 protein-coding 435-231 chr7 141427845 141428196 + 2 NA intron (NM_001195278, intron 2 of 3) MER50|LTR|ERV1 -123390 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 319-153 chr14 87519089 87519317 + 2 NA Intergenic Intergenic 136091 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 174-158 chrX 96267150 96267300 + 2 NA Intergenic Intergenic 70677 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 124-56 chr5 16232091 16232164 + 2 NA Intergenic Intergenic 51886 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 443-265 chr6 80116867 80117215 + 2 NA intron (NR_134945, intron 1 of 10) intron (NR_134945, intron 1 of 10) 10370 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 559-98 chr2 118422610 118423047 + 2 NA Intergenic L1MCc|LINE|L1 180138 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 320-129 chr12 118665740 118665918 + 2 NA Intergenic Intergenic 95850 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 338-438 chr5 72689105 72689370 + 2 NA Intergenic Intergenic -28568 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 703-10 chr10 25967559 25968061 + 2 NA intron (NM_001368265, intron 4 of 7) L1MEf|LINE|L1 33581 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 235-404 chrX 48835038 48835259 + 2 NA intron (NM_013271, intron 1 of 2) CpG 462 NM_013271 27344 Hs.522640 NM_013271 ENSG00000102109 PCSK1N BigLEN|PEN|PROSAAS|SAAS|SCG8|SgVIII proprotein convertase subtilisin/kexin type 1 inhibitor protein-coding 228-184 chr2 193822522 193822706 + 2 NA Intergenic Intergenic -521655 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 314-628 chrX 127777125 127777334 + 2 NA Intergenic Intergenic 275174 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 430-295 chr7 98041352 98041695 + 2 NA Intergenic AluSx|SINE|Alu -51419 NM_006188 4951 Hs.510456 NM_006188 ENSG00000135175 OCM2 OCM|OM oncomodulin 2 protein-coding 275-6 chr1 64220880 64221083 + 2 NA intron (NR_158769, intron 6 of 8) intron (NR_158769, intron 6 of 8) 17358 NR_158768 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 602-114 chr6 21428802 21429177 + 2 NA Intergenic Intergenic 82903 NR_103790 100874531 Hs.112750 NR_103790 ENSG00000280989 LINC00581 linc-MBOAT1-4 long intergenic non-protein coding RNA 581 ncRNA 573-171 chr6 113489244 113489787 + 2 NA Intergenic Intergenic -56068 NR_149098 105377957 Hs.25088 NR_149098 ENSG00000232316 LINC02518 - long intergenic non-protein coding RNA 2518 ncRNA 280-161 chr17 51257057 51257258 + 2 NA intron (NM_017643, intron 2 of 16) intron (NM_017643, intron 2 of 16) 2892 NM_017643 54799 Hs.656803 NM_017643 ENSG00000011258 MBTD1 SA49P01 mbt domain containing 1 protein-coding 275-91 chr12 133003617 133003802 + 2 NA intron (NM_001256279, intron 2 of 4) intron (NM_001256279, intron 2 of 4) 17342 NM_019591 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 137-83 chr7 38146192 38146273 + 2 NA Intergenic L1M1|LINE|L1 -32013 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 357-102 chr14 24130395 24130710 + 2 NA promoter-TSS (NM_203402) promoter-TSS (NM_203402) -914 NM_203402 161247 Hs.128060 NM_203402 ENSG00000139914 FITM1 FIT1 fat storage inducing transmembrane protein 1 protein-coding 250-74 chr11 92731340 92731530 + 2 NA intron (NM_001008781, intron 3 of 24) intron (NM_001008781, intron 3 of 24) 184193 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 352-348 chr4 27192014 27192202 + 2 NA Intergenic Intergenic -25371 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 312-180 chr16 87079318 87079481 + 2 NA Intergenic Intergenic 21615 NR_126008 440390 Hs.513789 NR_126008 ENSG00000232190 LINC02181 - long intergenic non-protein coding RNA 2181 ncRNA 347-432 chr6 51314641 51314907 + 2 NA Intergenic Intergenic -307096 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 168-8 chr10 4767473 4767629 + 2 NA Intergenic Intergenic -58626 NM_001271021 83592 Hs.657944 NM_031436 ENSG00000165568 AKR1E2 AKR1CL2|AKRDC1|LoopADR|TAKR|hTSP|htAKR aldo-keto reductase family 1 member E2 protein-coding 270-249 chr3 147441962 147442203 + 2 NA intron (NR_121655, intron 1 of 2) AluJr|SINE|Alu 20755 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 584-86 chr20 43420666 43421101 + 2 NA Intergenic L1M2c|LINE|L1 -37013 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 388-121 chr16 23916588 23916875 + 2 NA intron (NM_002738, intron 2 of 16) L1ME4b|LINE|L1 80748 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 270-238 chr3 89800997 89801208 + 2 NA Intergenic Intergenic 693481 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 473-90 chr14 86844528 86844892 + 2 NA Intergenic Intergenic -61068 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 280-260 chr3 91357241 91357404 + 2 NA Intergenic Intergenic 2249701 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 323-290 chr20 11364425 11364620 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -91139 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 703-20 chr11 80228235 80228709 + 2 NA Intergenic L1MA6|LINE|L1 534331 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 544-200 chr6 116905854 116906279 + 2 NA intron (NM_173560, intron 6 of 18) L1MB3|LINE|L1 28824 NM_173560 222546 Hs.352276 NM_173560 ENSG00000185002 RFX6 MTCHRS|MTFS|RFXDC1|dJ955L16.1 regulatory factor X6 protein-coding 360-88 chr12 55016711 55016910 + 2 NA Intergenic Intergenic -3164 NM_021191 58158 Hs.591024 NM_021191 ENSG00000123307 NEUROD4 ATH-3|ATH3|Atoh3|MATH-3|MATH3|bHLHa4 neuronal differentiation 4 protein-coding 837-15 chr2 67540998 67541566 + 2 NA Intergenic L1PB3|LINE|L1 143949 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 365-252 chr3 25168719 25168924 + 2 NA intron (NM_001290216, intron 3 of 10) HAL1|LINE|L1 -171981 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 525-192 chr5 19772810 19773166 + 2 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 113284 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 298-269 chr21 29354334 29354589 + 2 NA intron (NR_027655, intron 6 of 7) L2b|LINE|L2 -18040 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 349-527 chrX 58430203 58430433 + 2 NA Intergenic ALR/Alpha|Satellite|centr -519685 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 204-175 chr21 27189932 27190130 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -222943 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 484-150 chr2 213679984 213680336 + 2 NA intron (NR_047660, intron 9 of 14) LTR53|LTR|ERVL -77907 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 572-139 chr5 46289092 46289447 + 2 NA Intergenic ALR/Alpha|Satellite|centr -592889 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 264-417 chr8 89073332 89073566 + 2 NA Intergenic L1MC1|LINE|L1 684262 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 237-160 chr2 2770573 2770802 + 2 NA Intergenic Intergenic 355339 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 336-421 chr4 75063290 75063609 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 21259 NR_149051 105377283 Hs.103159 NR_149051 LINC02562 - long intergenic non-protein coding RNA 2562 ncRNA 343-236 chr2 52593191 52593485 + 2 NA Intergenic Intergenic 109277 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 384-304 chr5 141377101 141377414 + 2 NA TTS (NM_032086) TTS (NM_032086) 3173 NM_032086 56109 Hs.368160 NM_018919 ENSG00000253731 PCDHGA6 PCDH-GAMMA-A6 protocadherin gamma subfamily A, 6 protein-coding 242-148 chr18 60326820 60326981 + 2 NA Intergenic L2a|LINE|L2 45875 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 282-210 chr2 78471315 78471523 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -74112 NR_136311 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 233-336 chr6 71688340 71688472 + 2 NA Intergenic Intergenic -198297 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 192-169 chr5 125259737 125259902 + 2 NA intron (NR_109882, intron 4 of 5) L2a|LINE|L2 222988 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 579-93 chr21 28765448 28765998 + 2 NA Intergenic Intergenic 119644 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 271-417 chr7 118460219 118460472 + 2 NA Intergenic Intergenic 235641 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 446-334 chrX 126153029 126153379 + 2 NA Intergenic Intergenic 13085 NM_001013628 340578 Hs.181867 NM_001013628 ENSG00000198354 DCAF12L2 WDR40C DDB1 and CUL4 associated factor 12 like 2 protein-coding 225-333 chr7 55861524 55861712 + 2 NA intron (NM_207366, intron 2 of 9) intron (NM_207366, intron 2 of 9) 1134 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 369-178 chr19 37969059 37969266 + 2 NA intron (NM_015073, intron 1 of 21) FRAM|SINE|Alu 61954 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 384-381 chr8 124778949 124779294 + 2 NA Intergenic AluJb|SINE|Alu -42864 NR_039806 100616221 NR_039806 ENSG00000283609 MIR4662A - microRNA 4662a ncRNA 345-436 chr5 116882342 116882683 + 2 NA Intergenic Intergenic -120303 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 265-24 chr1 240321361 240321592 + 2 NA intron (NM_020066, intron 8 of 17) Charlie1|DNA|hAT-Charlie 229593 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 195-152 chr3 109714830 109714956 + 2 NA Intergenic Intergenic 112065 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 476-164 chr21 15385911 15386242 + 2 NA Intergenic L1MEf|LINE|L1 -321076 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 613-136 chr8 89331549 89331999 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 425937 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 319-181 chr16 78471277 78471555 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 371762 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 500-140 chr2 114557345 114557751 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 95971 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 167-33 chr13 57380855 57381016 + 2 NA Intergenic L1MB5|LINE|L1 213738 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 148-45 chr2 191073746 191073847 + 2 NA intron (NM_003151, intron 4 of 23) intron (NM_003151, intron 4 of 23) 52270 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 308-81 chr11 34732432 34732719 + 2 NA Intergenic MIRb|SINE|MIR 100009 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 425-157 chr2 214982567 214982923 + 2 NA intron (NR_103740, intron 31 of 54) L2a|LINE|L2 49341 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 316-269 chr2 79907034 79907207 + 2 NA intron (NM_001282598, intron 6 of 17) intron (NM_001282598, intron 6 of 17) -40537 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 311-447 chr6 134326201 134326430 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR -8257 NM_001143676 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 193-152 chr4 34234299 34234452 + 2 NA intron (NR_147184, intron 2 of 3) intron (NR_147184, intron 2 of 3) 35372 NR_147183 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 315-390 chr5 99157110 99157392 + 2 NA Intergenic Intergenic -227537 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 224-35 chr10 76282462 76282587 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 499763 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 415-263 chr7 119077478 119077800 + 2 NA Intergenic Intergenic 829736 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 245-340 chr8 55754990 55755209 + 2 NA intron (NM_001286661, intron 2 of 4) FLAM_C|SINE|Alu 18279 NM_001363177 137695 Hs.420076 NM_152417 ENSG00000167904 TMEM68 - transmembrane protein 68 protein-coding 267-72 chr11 109906900 109907098 + 2 NA Intergenic Intergenic -186393 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 416-257 chr4 137646820 137647130 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR 101244 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 204-137 chr2 41636160 41636342 + 2 NA Intergenic Intergenic -241304 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 493-284 chr7 106590852 106591218 + 2 NA Intergenic AluSq2|SINE|Alu 70123 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 357-372 chr5 175717107 175717407 + 2 NA Intergenic MIRb|SINE|MIR 59186 NM_001131055 3274 Hs.247885 NM_022304 ENSG00000113749 HRH2 H2R|HH2R histamine receptor H2 protein-coding 315-68 chr10 107919072 107919337 + 2 NA intron (NR_125760, intron 4 of 4) L1M4b|LINE|L1 150089 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 251-201 chr20 24548871 24549030 + 2 NA intron (NM_024893, intron 2 of 3) L1MA5A|LINE|L1 78989 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 394-239 chr4 66617330 66617591 + 2 NA Intergenic L1PA16|LINE|L1 340636 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 320-172 chr15 67476050 67476268 + 2 NA intron (NM_001284348, intron 15 of 16) MamTip3|DNA|hAT-Tip100 44814 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 299-268 chr22 33856074 33856227 + 2 NA intron (NM_001362953, intron 1 of 14) intron (NM_001362953, intron 1 of 14) 64278 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 546-207 chr6 40472639 40473107 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 94536 NR_160960 732253 Hs.180197 NM_001359094 TDRG1 LINC00532|lincRNA-NR_024015 testis development related 1 ncRNA 286-368 chr5 129587510 129587764 + 2 NA intron (NM_133638, intron 7 of 22) L1MEg|LINE|L1 -126948 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 213-51 chr11 26929604 26929789 + 2 NA Intergenic Intergenic -64416 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 336-98 chr11 54897979 54898169 + 2 NA Intergenic ALR/Alpha|Satellite|centr 191242 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 376-349 chr6 83261457 83261797 + 2 NA intron (NM_002395, intron 6 of 13) L2|LINE|L2 -67727 NM_001199917 5238 Hs.661665 NM_015599 ENSG00000013375 PGM3 AGM1|IMD23|PAGM|PGM 3 phosphoglucomutase 3 protein-coding 545-167 chr4 167963110 167963494 + 2 NA Intergenic Intergenic -129235 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 459-270 chr7 6487900 6488225 + 2 NA Intergenic AluJo|SINE|Alu -3910 NM_006854 11014 Hs.654552 NM_006854 ENSG00000136240 KDELR2 ELP-1|ERD2.2 KDEL endoplasmic reticulum protein retention receptor 2 protein-coding 274-67 chr11 36962919 36963101 + 2 NA Intergenic L1M3e|LINE|L1 -364731 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 337-120 chr12 72421977 72422177 + 2 NA intron (NM_013381, intron 3 of 18) intron (NM_013381, intron 3 of 18) -148568 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 341-20 chr1 74806811 74806995 + 2 NA Intergenic Intergenic -73495 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 291-486 chr9 24914022 24914307 + 2 NA Intergenic MIRb|SINE|MIR -368267 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 389-399 chrX 98909197 98909533 + 2 NA Intergenic L1ME3G|LINE|L1 -1344830 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 402-209 chr3 84616311 84616581 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger 253129 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 322-116 chr12 16639175 16639444 + 2 NA Intergenic Intergenic -31095 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 339-404 chr4 55824018 55824240 + 2 NA intron (NM_001351574, intron 1 of 2) intron (NM_001351574, intron 1 of 2) 4126 NM_001351575 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 519-265 chrX 97909453 97909928 + 2 NA Intergenic Intergenic -345155 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 361-49 chr10 75782572 75782760 + 2 NA promoter-TSS (NM_032024) promoter-TSS (NM_032024) -95 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 216-51 chr11 15724588 15724755 + 2 NA Intergenic L2|LINE|L2 80786 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 261-358 chr7 74469558 74469739 + 2 NA intron (NM_016328, intron 1 of 26) L1MB7|LINE|L1 15742 NM_005685 9569 Hs.647056 NM_005685 ENSG00000006704 GTF2IRD1 BEN|CREAM1|GTF3|MUSTRD1|RBAP2|WBS|WBSCR11|WBSCR12|hMusTRD1alpha1 GTF2I repeat domain containing 1 protein-coding 370-87 chr11 54919244 54919503 + 2 NA Intergenic ALR/Alpha|Satellite|centr 212541 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 312-259 chr2 129018466 129018659 + 2 NA Intergenic Intergenic 153962 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 329-467 chr5 106646165 106646456 + 2 NA Intergenic L1ME3A|LINE|L1 364704 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 397-249 chr5 39951830 39952109 + 2 NA Intergenic L1PA10|LINE|L1 -100322 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 541-34 chr11 79057205 79057569 + 2 NA intron (NM_001098816, intron 6 of 33) L2a|LINE|L2 344722 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 191-78 chr17 60526682 60526805 + 2 NA promoter-TSS (NM_001282476) promoter-TSS (NM_001282476) -501 NM_006380 10513 Hs.84084 NM_006380 ENSG00000062725 APPBP2 APP-BP2|HS.84084|PAT1 amyloid beta precursor protein binding protein 2 protein-coding 361-315 chr4 32764610 32764844 + 2 NA Intergenic Intergenic 413689 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 413-56 chr11 110899892 110900230 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger -186872 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 303-118 chr14 31142004 31142207 + 2 NA intron (NM_015382, intron 17 of 42) intron (NM_015382, intron 17 of 42) 65688 NM_015382 25831 Hs.708017 NM_015382 ENSG00000092148 HECTD1 EULIR HECT domain E3 ubiquitin protein ligase 1 protein-coding 201-145 chr22 45040802 45040937 + 2 NA Intergenic AluJb|SINE|Alu -30864 NM_001135862 112885 Hs.254097 NM_138415 ENSG00000056487 PHF21B BHC80L|PHF4 PHD finger protein 21B protein-coding 783-2 chr1 50279479 50279932 + 2 NA Intergenic Intergenic 143738 NM_032110 63950 Hs.334481 NM_032110 ENSG00000142700 DMRTA2 - DMRT like family A2 protein-coding 537-171 chr4 54774974 54775469 + 2 NA Intergenic L2|LINE|L2 117293 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 218-229 chr3 169155964 169156128 + 2 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -8575 NM_001366474 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 397-337 chr8 82562073 82562313 + 2 NA Intergenic LTR40b|LTR|ERVL -349911 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 318-300 chr2 195917304 195917549 + 2 NA intron (NM_018897, intron 24 of 64) MER50|LTR|ERV1 151411 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 450-268 chr6 139619593 139619933 + 2 NA Intergenic L1MEc|LINE|L1 -145167 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 298-428 chr7 40350019 40350169 + 2 NA intron (NM_024728, intron 9 of 14) intron (NM_024728, intron 9 of 14) 215118 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 391-336 chr8 16514311 16514573 + 2 NA Intergenic Intergenic -321651 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 242-177 chr2 59007557 59007725 + 2 NA intron (NR_033873, intron 7 of 13) intron (NR_033873, intron 7 of 13) -210067 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 409-131 chr2 15078881 15079135 + 2 NA Intergenic Intergenic 446291 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 301-203 chr2 61636162 61636430 + 2 NA Intergenic HERV16-int|LTR|ERVL -97940 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 218-285 chr6 51609850 51610018 + 2 NA Intergenic Intergenic -11936 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 680-59 chr2 102563221 102563705 + 2 NA Intergenic MIR|SINE|MIR -56090 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 358-526 chrX 65222296 65222554 + 2 NA Intergenic L1PB1|LINE|L1 -187684 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 236-279 chr5 22633199 22633428 + 2 NA intron (NM_004061, intron 1 of 14) L1MB8|LINE|L1 220031 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 779-22 chr15 68035660 68036235 + 2 NA Intergenic Intergenic -18232 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 312-211 chr18 70861243 70861489 + 2 NA Intergenic L1MDb|LINE|L1 -210412 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 332-181 chr16 48715022 48715224 + 2 NA Intergenic Intergenic -104943 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 187-22 chr10 60399638 60399792 + 2 NA intron (NM_001204403, intron 2 of 43) intron (NM_001204403, intron 2 of 43) -9840 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 122-10 chr12 17486343 17486427 + 2 NA Intergenic Intergenic 102693 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 301-299 chr3 190416502 190416678 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 28718 NM_006580 10686 Hs.251391 NM_006580 ENSG00000113946 CLDN16 HOMG3|PCLN1 claudin 16 protein-coding 216-316 chr6 153751246 153751402 + 2 NA Intergenic Intergenic -259172 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 564-129 chr3 114744758 114745212 + 2 NA intron (NM_001164343, intron 4 of 11) intron (NM_001164343, intron 4 of 11) -1460 NR_039959 100616166 NR_039959 ENSG00000264623 MIR4796 mir-4796 microRNA 4796 ncRNA 242-226 chr3 2126061 2126295 + 2 NA intron (NR_046555, intron 2 of 2) intron (NR_046555, intron 2 of 2) 18063 NR_046555 100873976 Hs.611138 NR_046555 ENSG00000227588 CNTN4-AS2 - CNTN4 antisense RNA 2 ncRNA 301-254 chr20 45626387 45626588 + 2 NA intron (NM_147198, intron 1 of 4) L1MA5A|LINE|L1 -3252 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 212-224 chr3 146408819 146408996 + 2 NA Intergenic HERVS71-int|LTR|ERV1 60394 NM_001199978 57047 Hs.744414 NM_020359 ENSG00000163746 PLSCR2 - phospholipid scramblase 2 protein-coding 406-222 chr5 24891774 24892159 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -51383 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 396-111 chr15 37606572 37606930 + 2 NA Intergenic L1ME3F|LINE|L1 -327856 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 494-245 chr6 50374610 50374964 + 2 NA Intergenic L1MB8|LINE|L1 -324858 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 311-441 chr6 123302753 123302930 + 2 NA intron (NM_006073, intron 24 of 40) MER5A1|DNA|hAT-Charlie -136763 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 213-252 chr6 119651251 119651411 + 2 NA intron (NR_134600, intron 2 of 3) MLT1I|LTR|ERVL-MaLR 101523 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 281-456 chr9 37156786 37157024 + 2 NA intron (NM_001289120, intron 2 of 8) intron (NM_001289120, intron 2 of 8) 36307 NM_001289120 84186 Hs.654700 NM_032226 ENSG00000147905 ZCCHC7 AIR1|HSPC086 zinc finger CCHC-type containing 7 protein-coding 496-77 chr14 44503733 44504157 + 2 NA TTS (NM_032135) TTS (NM_032135) 3338 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 348-58 chr10 62131457 62131701 + 2 NA Intergenic MIRc|SINE|MIR 82222 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 588-171 chrX 25588000 25588461 + 2 NA Intergenic L1MA4A|LINE|L1 -550113 NM_173699 286514 Hs.350683 NM_173699 ENSG00000176774 MAGEB18 - MAGE family member B18 protein-coding 321-251 chr18 56998694 56999009 + 2 NA intron (NM_015285, intron 26 of 27) intron (NM_015285, intron 26 of 27) 73268 NR_152602 100885779 Hs.565136 NR_048536 ENSG00000258609 LINC-ROR ROR|lincRNA-RoR|lincRNA-ST8SIA3 long intergenic non-protein coding RNA, regulator of reprogramming ncRNA 247-117 chr14 66989328 66989478 + 2 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -200037 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 309-272 chr2 140012809 140012973 + 2 NA Intergenic Intergenic 573794 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 204-301 chr8 137857131 137857262 + 2 NA intron (NR_161374, intron 2 of 7) MER3|DNA|hAT-Charlie 226349 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 487-119 chr18 36394901 36395298 + 2 NA intron (NM_001281740, intron 3 of 28) HAL1M8|LINE|L1 97386 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 210-49 chr11 94941946 94942147 + 2 NA Intergenic Intergenic 31510 NM_016403 51503 Hs.503597 NM_016403 ENSG00000150316 CWC15 AD002|C11orf5|Cwf15|HSPC148|ORF5 CWC15 spliceosome associated protein homolog protein-coding 382-371 chr7 6683767 6684081 + 2 NA Intergenic Intergenic 23023 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 303-502 chrX 36122721 36122927 + 2 NA intron (NM_001304548, intron 33 of 63) L1MA2|LINE|L1 203090 NM_001304548 286464 Hs.376425 NM_152632 ENSG00000165164 CFAP47 CHDC2|CXorf22|CXorf30|CXorf59 cilia and flagella associated protein 47 protein-coding 472-133 chr18 50577996 50578343 + 2 NA intron (NM_001292039, intron 1 of 4) intron (NM_001292039, intron 1 of 4) 18082 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 848-38 chr5 89895763 89896426 + 2 NA Intergenic L1MA2|LINE|L1 120626 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 339-360 chr3 65664189 65664383 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -229530 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 343-568 chr8 139478327 139478524 + 2 NA Intergenic Intergenic 224698 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 387-276 chr5 44055273 44055546 + 2 NA Intergenic L1MA8|LINE|L1 -333323 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 422-179 chr3 42377182 42377568 + 2 NA Intergenic Intergenic 33235 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 407-296 chr7 54290608 54290851 + 2 NA Intergenic L1ME3G|LINE|L1 -39968 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 522-167 chr3 8056290 8056663 + 2 NA Intergenic AluSg|SINE|Alu -40169 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 156-21 chr11 39092585 39092691 + 2 NA Intergenic Intergenic 443780 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 175-25 chr10 66476924 66477084 + 2 NA intron (NM_001127384, intron 11 of 17) Arthur1|DNA|hAT-Tip100 -449032 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 788-49 chr8 83762258 83762799 + 2 NA Intergenic Intergenic 358770 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 406-296 chr8 89094391 89094667 + 2 NA Intergenic Intergenic 663182 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 586-79 chr2 134077632 134078126 + 2 NA Intergenic MIRb|SINE|MIR -42056 NM_001371457 216-52 chr11 17009523 17009693 + 2 NA intron (NM_001329630, intron 3 of 26) intron (NM_001329630, intron 3 of 26) 4806 NM_175058 144100 Hs.12332 NM_175058 ENSG00000166689 PLEKHA7 - pleckstrin homology domain containing A7 protein-coding 170-95 chr3 72414040 72414170 + 2 NA intron (NM_012234, intron 1 of 3) L1ME1|LINE|L1 32518 NM_012234 23429 Hs.7910 NM_012234 ENSG00000163602 RYBP AAP1|APAP-1|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 326-508 chr7 104639764 104639985 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 164218 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 354-438 chr7 86367579 86367877 + 2 NA Intergenic Intergenic -276181 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 422-73 chr14 36843276 36843555 + 2 NA intron (NM_001171170, intron 2 of 10) intron (NM_001171170, intron 2 of 10) 108976 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 507-200 chr5 92010185 92010638 + 2 NA Intergenic Intergenic -627094 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 288-329 chr5 64268746 64268911 + 2 NA intron (NM_001113561, intron 5 of 7) intron (NM_001113561, intron 5 of 7) 102985 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 395-358 chr9 96349667 96350010 + 2 NA intron (NR_104627, intron 6 of 12) LTR48B|LTR|ERV1 33872 NR_104627 11046 Hs.494556 NM_007001 ENSG00000130958 SLC35D2 HFRC1|SQV7L|UGTrel8|hfrc solute carrier family 35 member D2 protein-coding 218-139 chr19 34958554 34958717 + 2 NA exon (NM_175872, exon 4 of 4) exon (NM_175872, exon 4 of 4) 5594 NM_175872 126375 Hs.50405 NM_175872 ENSG00000180884 ZNF792 - zinc finger protein 792 protein-coding 320-159 chr14 88138694 88138971 + 2 NA Intergenic Intergenic -112520 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 247-330 chr5 89741195 89741385 + 2 NA Intergenic L1PA8A|LINE|L1 275430 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 334-376 chr4 58271646 58271890 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 264560 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 396-15 chr1 95498387 95498647 + 2 NA Intergenic Intergenic -11599 NR_110622 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 349-84 chr10 107144511 107144702 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 20100 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 340-374 chr3 131696498 131696751 + 2 NA intron (NM_130808, intron 4 of 15) intron (NM_130808, intron 4 of 15) -193653 NM_007208 11222 Hs.205163 NM_007208 ENSG00000114686 MRPL3 COXPD9|MRL3|RPML3 mitochondrial ribosomal protein L3 protein-coding 435-20 chr1 196960054 196960355 + 2 NA TTS (NM_001312672) TTS (NM_001312672) 16436 NM_001312672 3080 Hs.632450 NM_005666 ENSG00000080910 CFHR2 CFHL2|FHR2|HFL3 complement factor H related 2 protein-coding 183-93 chr3 64285570 64285726 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -17475 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 462-96 chr16 6999394 6999850 + 2 NA intron (NM_001142334, intron 1 of 13) L1MC5|LINE|L1 225813 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 139-70 chr5 51155379 51155482 + 2 NA Intergenic AluSx|SINE|Alu -185243 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 477-130 chr19 29342243 29342558 + 2 NA intron (NR_040029, intron 9 of 9) L1M4|LINE|L1 -129249 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 233-32 chr10 33954162 33954350 + 2 NA Intergenic Intergenic -181576 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 341-33 chr1 172049072 172049321 + 2 NA intron (NM_001278252, intron 10 of 14) MIR|SINE|MIR -89612 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 366-429 chr8 42624217 42624518 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie -72999 NM_000749 1142 Hs.654576 NM_000749 ENSG00000147432 CHRNB3 - cholinergic receptor nicotinic beta 3 subunit protein-coding 345-322 chr21 27518437 27518654 + 2 NA Intergenic L2|LINE|L2 -203834 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 347-311 chr3 98689258 98689446 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -42884 NM_001271147 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 314-82 chr10 129813980 129814169 + 2 NA Intergenic Intergenic 29300 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 257-320 chr5 33574827 33574973 + 2 NA intron (NM_001324512, intron 17 of 21) intron (NM_001324512, intron 17 of 21) 134124 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 254-295 chr5 12368527 12368752 + 2 NA Intergenic Intergenic -206218 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 309-308 chr20 48011287 48011458 + 2 NA Intergenic Intergenic -21255 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 425-177 chr3 22202243 22202627 + 2 NA Intergenic Intergenic 245296 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 232-355 chr7 53115335 53115502 + 2 NA Intergenic Intergenic 79785 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 388-317 chr6 152024169 152024386 + 2 NA intron (NM_001122741, intron 6 of 8) L1M8|LINE|L1 144010 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 469-210 chr5 11490174 11490533 + 2 NA intron (NM_001288715, intron 2 of 20) intron (NM_001288715, intron 2 of 20) 98564 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 343-587 chrX 10905357 10905668 + 2 NA Intergenic L2a|LINE|L2 -71829 NM_033290 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 644-85 chr6 67828764 67829243 + 2 NA Intergenic Intergenic -226348 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 435-227 chr7 34708051 34708338 + 2 NA intron (NM_001300934, intron 2 of 6) intron (NM_001300934, intron 2 of 6) 49955 NM_001300935 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 365-284 chr4 37898850 37899172 + 2 NA intron (NM_001253912, intron 1 of 20) intron (NM_001253912, intron 1 of 20) 7927 NM_015173 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 257-70 chr11 98127985 98128179 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -892867 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 190-84 chr2 24259650 24259825 + 2 NA intron (NM_001348182, intron 21 of 38) L2c|LINE|L2 84684 NM_001040710 653140 Hs.741736 NM_001040710 ENSG00000186453 FAM228A C2orf84 family with sequence similarity 228 member A protein-coding 259-394 chr8 83167940 83168140 + 2 NA Intergenic Intergenic -235718 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 313-410 chr4 161659002 161659276 + 2 NA intron (NM_001128428, intron 6 of 14) intron (NM_001128428, intron 6 of 14) -363594 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 339-372 chr3 94551582 94551798 + 2 NA Intergenic L1PA4|LINE|L1 -386573 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 542-163 chr5 29554230 29554598 + 2 NA Intergenic L1MA5|LINE|L1 -158438 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 336-171 chr14 83458069 83458335 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 815570 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 322-420 chr5 36487505 36487719 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -118743 NM_001166696 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 282-51 chr10 74883919 74884128 + 2 NA intron (NM_001370144, intron 3 of 15) intron (NM_001370144, intron 3 of 15) -28763 NR_134476 101929165 Hs.670533 NR_134476 LOC101929165 - uncharacterized LOC101929165 ncRNA 350-374 chr4 178072369 178072603 + 2 NA Intergenic L2|LINE|L2 -164550 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 368-352 chr5 14130080 14130428 + 2 NA Intergenic Intergenic -13088 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 319-309 chr22 22975918 22976150 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 88218 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 376-31 chr1 239750933 239751288 + 2 NA intron (NM_000740, intron 3 of 4) AluSq2|SINE|Alu -31991 NR_103776 100506915 Hs.667175 NR_103776 ENSG00000233355 CHRM3-AS2 - CHRM3 antisense RNA 2 ncRNA 822-45 chr4 110031975 110032565 + 2 NA Intergenic Intergenic 119387 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 396-359 chr8 132351132 132351461 + 2 NA intron (NM_004519, intron 1 of 14) MIRb|SINE|MIR 95966 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 374-430 chrX 85040875 85041091 + 2 NA intron (NM_198450, intron 1 of 8) L1PA16|LINE|L1 37106 NM_198450 139322 Hs.512181 NM_198450 ENSG00000155008 APOOL CXorf33|FAM121A|MICOS27|Mic27|UNQ8193 apolipoprotein O like protein-coding 387-363 chr8 88809828 88810120 + 2 NA Intergenic (TATTAA)n|Simple_repeat|Simple_repeat -482491 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 242-167 chr2 32319318 32319533 + 2 NA Intergenic Intergenic -37603 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 280-279 chr4 36269071 36269317 + 2 NA intron (NR_122080, intron 2 of 2) intron (NR_122080, intron 2 of 2) -12422 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 133-21 chr14 37944860 37944970 + 2 NA Intergenic MER4B|LTR|ERV1 -42791 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 499-87 chr17 56582859 56583225 + 2 NA Intergenic L2a|LINE|L2 -10657 NM_005450 9241 Hs.248201 NM_005450 ENSG00000183691 NOG SYM1|SYNS1|SYNS1A noggin protein-coding 181-144 chr7 4463533 4463629 + 2 NA Intergenic Intergenic -218714 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 409-257 chr5 170734850 170735151 + 2 NA intron (NM_001278339, intron 7 of 7) MSTB1|LTR|ERVL-MaLR -48719 NM_001291985 2568 Hs.26225 NM_014211 ENSG00000094755 GABRP - gamma-aminobutyric acid type A receptor pi subunit protein-coding 281-148 chr16 59368102 59368311 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger 386985 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 255-325 chr5 43898311 43898488 + 2 NA Intergenic Intergenic -295169 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 356-417 chr5 166581350 166581634 + 2 NA Intergenic Intergenic 344878 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 556-144 chr3 80124637 80125122 + 2 NA Intergenic L2a|LINE|L2 -356881 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 374-89 chr13 78538486 78538686 + 2 NA intron (NR_047001, intron 3 of 5) (ATA)n|Simple_repeat|Simple_repeat -57536 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 363-192 chr19 29013918 29014186 + 2 NA TTS (NR_040036) TTS (NR_040036) 11497 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 256-368 chr6 139717969 139718129 + 2 NA Intergenic L1ME3|LINE|L1 -53024 NR_038399 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 343-48 chr10 33871600 33871896 + 2 NA Intergenic Intergenic -99068 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 650-136 chr9 103423813 103424345 + 2 NA Intergenic Intergenic -99046 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 285-146 chr16 65174627 65174826 + 2 NA intron (NR_110918, intron 3 of 3) L1MD2|LINE|L1 1847 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 212-107 chr15 81893313 81893485 + 2 NA Intergenic Intergenic 152619 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 1182-16 chr7 61771773 61772506 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1531917 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 346-431 chr6 92434674 92434959 + 2 NA Intergenic Intergenic -744388 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 308-275 chr21 26948755 26948959 + 2 NA intron (NM_007038, intron 2 of 7) MIR|SINE|MIR -5104 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 339-579 chr8 92611467 92611681 + 2 NA intron (NR_125827, intron 3 of 4) intron (NR_125827, intron 3 of 4) 43920 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 274-195 chr2 37160557 37160727 + 2 NA Intergenic Intergenic -3595 NM_002759 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 523-66 chr12 38947701 38948120 + 2 NA Intergenic L1MA3|LINE|L1 -42319 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 290-106 chr12 47115942 47116131 + 2 NA intron (NM_001281429, intron 2 of 2) intron (NM_001281429, intron 2 of 2) -36077 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 304-106 chr12 37749443 37749647 + 2 NA Intergenic ALR/Alpha|Satellite|centr -567229 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 464-93 chr17 69372684 69373046 + 2 NA Intergenic FLAM_C|SINE|Alu -41832 NM_002758 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 221-219 chr4 69577965 69578174 + 2 NA Intergenic Intergenic -52055 NM_001297616 7363 Hs.285887 NM_021139 ENSG00000156096 UGT2B4 HLUG25|UDPGT2B4|UDPGTH1|UDPGTh-1|UGT2B11 UDP glucuronosyltransferase family 2 member B4 protein-coding 270-123 chr15 57054802 57054968 + 2 NA intron (NM_001322164, intron 3 of 19) L1MEf|LINE|L1 135440 NM_001322164 6938 Hs.511504 NM_003205 ENSG00000140262 TCF12 CRS3|HEB|HTF4|HsT17266|TCF-12|bHLHb20|p64 transcription factor 12 protein-coding 455-156 chr22 45829822 45830203 + 2 NA intron (NM_013236, intron 10 of 11) L1MB3|LINE|L1 69488 NR_039919 100616253 NR_039919 ENSG00000264160 MIR4762 - microRNA 4762 ncRNA 253-181 chr2 36168040 36168186 + 2 NA Intergenic Intergenic 187457 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 243-112 chr13 78525747 78525898 + 2 NA intron (NR_047001, intron 3 of 5) HAL1|LINE|L1 -70300 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 500-66 chr12 42967955 42968287 + 2 NA Intergenic Intergenic -187194 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 182-20 chr10 43176096 43176240 + 2 NA intron (NM_018590, intron 7 of 7) intron (NM_018590, intron 7 of 7) 21271 NM_001319654 55454 Hs.657569 NM_018590 ENSG00000169826 CSGALNACT2 CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 2 protein-coding 348-183 chr17 26796876 26797118 + 2 NA Intergenic Intergenic 292244 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 444-211 chr5 161502415 161502806 + 2 NA intron (NM_000813, intron 4 of 9) L1MEc|LINE|L1 45514 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 223-223 chr3 112315565 112315743 + 2 NA intron (NR_147411, intron 1 of 4) LTR49-int|LTR|ERV1 13176 NR_147411 105374042 Hs.436357 NR_147411 ENSG00000239482 LOC105374042 - uncharacterized LOC105374042 ncRNA 322-140 chr13 44123722 44123896 + 2 NA intron (NR_104065, intron 1 of 4) intron (NR_104065, intron 1 of 4) 13260 NR_104065 101929212 Hs.534877 NR_104064 ENSG00000227258 SMIM2-AS1 C13orf44-AS1|C3orf81-AS1 SMIM2 antisense RNA 1 ncRNA 605-132 chr9 101962923 101963323 + 2 NA Intergenic L1MC|LINE|L1 -224543 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 282-381 chr5 82590993 82591164 + 2 NA Intergenic L1MCa|LINE|L1 -249077 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 343-505 chr7 45567380 45567717 + 2 NA Intergenic Intergenic -6592 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 585-122 chr5 23629828 23630312 + 2 NA Intergenic Intergenic 122415 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 417-60 chr12 46313250 46313480 + 2 NA Intergenic L1MB3|LINE|L1 -44322 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 314-254 chr19 35619263 35619534 + 2 NA intron (NM_015302, intron 13 of 18) intron (NM_015302, intron 13 of 18) 6663 NM_015302 23354 Hs.7426 NM_015302 ENSG00000249115 HAUS5 KIAA0841|dgt5 HAUS augmin like complex subunit 5 protein-coding 283-176 chr17 14573386 14573549 + 2 NA Intergenic Intergenic 269727 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 212-351 chr9 95565388 95565539 + 2 NA Intergenic Intergenic -48406 NM_001083602 5727 Hs.494538 NM_000264 ENSG00000185920 PTCH1 BCNS|NBCCS|PTC|PTC1|PTCH patched 1 protein-coding 294-36 chr10 44585878 44586039 + 2 NA Intergenic Intergenic -200861 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 343-456 chr6 5454998 5455209 + 2 NA intron (NR_125848, intron 1 of 1) L2a|LINE|L2 2972 NR_125848 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 415-225 chr5 153178001 153178374 + 2 NA Intergenic L1MA9|LINE|L1 -205838 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 215-310 chr8 54678283 54678419 + 2 NA Intergenic Intergenic 62255 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 248-361 chr6 170069328 170069564 + 2 NA Intergenic L1ME1|LINE|L1 -91196 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 319-315 chr22 43680629 43680871 + 2 NA intron (NM_198856, intron 10 of 29) L1MB7|LINE|L1 131555 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 251-134 chr18 6059932 6060089 + 2 NA intron (NM_173464, intron 16 of 19) intron (NM_173464, intron 16 of 19) -164056 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 325-404 chr4 98069591 98069905 + 2 NA intron (NM_174952, intron 5 of 10) intron (NM_174952, intron 5 of 10) 73728 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 372-533 chrX 145418814 145419147 + 2 NA Intergenic Intergenic 171477 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 713-24 chr14 46978046 46978603 + 2 NA intron (NM_001113498, intron 8 of 16) intron (NM_001113498, intron 8 of 16) -326543 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 226-331 chr7 126543047 126543167 + 2 NA intron (NM_001371085, intron 8 of 10) intron (NM_001371085, intron 8 of 10) 515077 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 623-49 chr17 73856209 73856595 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -27865 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 305-467 chr6 47769732 47769913 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -12217 NM_181744 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 284-293 chr4 107043503 107043677 + 2 NA Intergenic Intergenic -7277 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 269-374 chr7 14127714 14127919 + 2 NA Intergenic Intergenic -136391 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 515-80 chr16 30975212 30975725 + 2 NA intron (NM_014712, intron 13 of 18) AluSz|SINE|Alu -9739 NM_001142777 80270 Hs.460618 NM_025193 ENSG00000099377 HSD3B7 CBAS1|PFIC4|SDR11E3 hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7 protein-coding 411-260 chr6 117765382 117765641 + 2 NA Intergenic L1PA14|LINE|L1 90042 NM_138459 116150 Hs.289008 NM_138459 ENSG00000153989 NUS1 C6orf68|CDG1AA|MGC:7199|MRD55|NgBR|TANGO14 NUS1 dehydrodolichyl diphosphate synthase subunit protein-coding 229-135 chr16 35919173 35919363 + 2 NA Intergenic ALR/Alpha|Satellite|centr 172716 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 1148-6 chr3 149832021 149832800 + 2 NA intron (NM_007282, intron 2 of 10) intron (NM_007282, intron 2 of 10) 19722 NM_183383 11342 Hs.12333 NM_007282 ENSG00000082996 RNF13 EIEE73|RZF ring finger protein 13 protein-coding 526-231 chr7 104292053 104292423 + 2 NA Intergenic AmnSINE1|SINE|5S-Deu-L2 -36418 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 630-111 chr5 130592972 130593426 + 2 NA Intergenic L1PA7|LINE|L1 572057 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 214-124 chr17 33853233 33853435 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 303472 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 347-38 chr1 246530470 246530810 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -6353 NR_040002 255654 Hs.407570 NR_040002 ENSG00000242042 LINC01743 - long intergenic non-protein coding RNA 1743 ncRNA 283-317 chr4 43586910 43587116 + 2 NA Intergenic Intergenic -94470 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 303-72 chr11 86690171 86690393 + 2 NA Intergenic L1ME3G|LINE|L1 -17646 NM_001351934 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 209-40 chr10 61439501 61439667 + 2 NA intron (NR_134508, intron 1 of 6) intron (NR_134508, intron 1 of 6) -13055 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 367-151 chr16 64265768 64266062 + 2 NA Intergenic Intergenic 856148 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 284-56 chr10 93136033 93136232 + 2 NA Intergenic Intergenic 62239 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 345-219 chr18 35729075 35729290 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 74613 NM_020474 2589 Hs.514806 NM_020474 ENSG00000141429 GALNT1 GALNAC-T1 polypeptide N-acetylgalactosaminyltransferase 1 protein-coding 604-55 chr16 8408751 8409198 + 2 NA Intergenic Intergenic 180864 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 447-295 chr9 108486893 108487208 + 2 NA Intergenic Intergenic 368936 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 567-200 chr9 6155303 6155798 + 2 NA Intergenic L1MB3|LINE|L1 -59599 NM_001314044 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 270-309 chr5 95097180 95097372 + 2 NA intron (NM_024717, intron 1 of 22) L2a|LINE|L2 -15410 NM_001002796 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 408-44 chr10 67107357 67107587 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) 95206 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 178-30 chr11 85138356 85138475 + 2 NA intron (NM_001142699, intron 5 of 27) intron (NM_001142699, intron 5 of 27) -214994 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 686-12 chr10 76945745 76946157 + 2 NA intron (NM_001271519, intron 22 of 28) L1ME3G|LINE|L1 57907 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 362-372 chr6 22100369 22100575 + 2 NA intron (NR_015410, intron 8 of 11) intron (NR_015410, intron 8 of 11) 46721 NR_034143 729177 Hs.730673 NR_034143 ENSG00000260455 NBAT1 CASC14|NBAT-1 neuroblastoma associated transcript 1 ncRNA 303-288 chr3 98364227 98364402 + 2 NA Intergenic L1M1|LINE|L1 10460 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 369-102 chr14 28147499 28147763 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -474410 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 311-487 chr8 25465441 25465613 + 2 NA intron (NM_001317906, intron 3 of 13) intron (NM_001317906, intron 3 of 13) 6294 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 289-350 chr4 171505132 171505307 + 2 NA Intergenic AluSc5|SINE|Alu 133544 NR_147157 105377536 Hs.550719 NR_147157 ENSG00000249297 LINC02174 - long intergenic non-protein coding RNA 2174 ncRNA 422-206 chr4 22143230 22143511 + 2 NA Intergenic L1ME2|LINE|L1 -194619 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 279-320 chr5 37880950 37881217 + 2 NA Intergenic Intergenic 40645 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 413-78 chr13 83546261 83546502 + 2 NA Intergenic Intergenic 336012 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 587-9 chr1 182019013 182019435 + 2 NA Intergenic L1MA7|LINE|L1 42488 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 248-150 chr17 33085430 33085634 + 2 NA intron (NM_183377, intron 3 of 9) intron (NM_183377, intron 3 of 9) 92681 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 252-84 chr12 12545911 12546132 + 2 NA intron (NM_030640, intron 1 of 6).2 intron (NM_030640, intron 1 of 6).2 16842 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 307-455 chr7 62927398 62927602 + 2 NA Intergenic ALR/Alpha|Satellite|centr 376556 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 279-197 chr2 145973862 145974052 + 2 NA Intergenic Intergenic -613100 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 479-115 chr2 200401277 200401594 + 2 NA intron (NM_001100423, intron 3 of 12) intron (NM_001100423, intron 3 of 12) 92485 NM_001282744 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 335-467 chr6 72518664 72518881 + 2 NA Intergenic Intergenic -103071 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 784-53 chr5 179075763 179076379 + 2 NA intron (NM_014594, intron 2 of 4) MLT1D|LTR|ERVL-MaLR 15698 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 346-10 chr1 91166583 91166911 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -144492 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 247-104 chr13 65611011 65611152 + 2 NA Intergenic L1MB8|LINE|L1 -254966 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 233-166 chr2 60338616 60338824 + 2 NA Intergenic Intergenic 44316 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 353-205 chr18 4336575 4336803 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 72087 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 376-321 chr5 51460673 51461014 + 2 NA Intergenic Intergenic 77395 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 280-22 chr1 157816295 157816442 + 2 NA intron (NM_001159397, intron 1 of 9) L1MA6|LINE|L1 3752 NM_052938 115350 Hs.656112 NM_052938 ENSG00000163534 FCRL1 CD307a|FCRH1|IFGP1|IRTA5 Fc receptor like 1 protein-coding 289-334 chr4 52336164 52336445 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 285000 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 284-433 chr9 26971156 26971359 + 2 NA intron (NM_001099224, intron 2 of 13) HERVIP10F-int|LTR|ERV1 14845 NM_001349928 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 349-96 chr11 36255360 36255597 + 2 NA Intergenic Intergenic 33946 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 404-320 chr8 98834785 98835039 + 2 NA intron (NM_001256312, intron 3 of 12) LTR23|LTR|ERV1 -9224 NM_006281 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 313-442 chr5 100140488 100140686 + 2 NA Intergenic Intergenic 247667 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 212-160 chr2 97896990 97897179 + 2 NA intron (NM_015348, intron 3 of 40) L1MEc|LINE|L1 98864 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 165-72 chr22 34126701 34126837 + 2 NA Intergenic LTR16E2|LTR|ERVL -203881 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 315-198 chr18 22104305 22104497 + 2 NA Intergenic L1MA9|LINE|L1 64567 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 282-142 chr15 49222167 49222424 + 2 NA intron (NM_001289030, intron 4 of 10) L1MA4A|LINE|L1 52048 NM_001289030 2585 Hs.122006 NM_002044 ENSG00000156958 GALK2 GK2 galactokinase 2 protein-coding 267-427 chr8 103587338 103587525 + 2 NA intron (NM_001348497, intron 1 of 22) (AAGA)n|Simple_repeat|Simple_repeat -85521 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 428-72 chr14 83743327 83743684 + 2 NA Intergenic Intergenic 1100873 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 518-316 chr9 87245057 87245458 + 2 NA Intergenic Intergenic 96613 NR_161226 401535 Hs.657740 NR_161226 C9orf170 - chromosome 9 open reading frame 170 ncRNA 166-93 chr5 43184112 43184246 + 2 NA Intergenic AluSx1|SINE|Alu -8046 NM_153361 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 187-17 chr1 212999595 212999720 + 2 NA intron (NM_144567, intron 7 of 8) intron (NM_144567, intron 7 of 8) 15852 NM_001300755 90806 Hs.157078 NM_144567 ENSG00000174606 ANGEL2 Ccr4d|KIAA0759L angel homolog 2 protein-coding 493-287 chr7 123991782 123992202 + 2 NA Intergenic AluYm1|SINE|Alu -2630 NR_133947 105375483 Hs.435972 NR_133947 ENSG00000241345 LOC105375483 - uncharacterized LOC105375483 ncRNA 194-87 chr2 4771198 4771379 + 2 NA Intergenic Intergenic -115066 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 255-418 chr8 64282010 64282254 + 2 NA intron (NR_125826, intron 1 of 4) intron (NR_125826, intron 1 of 4) 86426 NR_125826 102724623 Hs.586375 NR_125826 ENSG00000253554 LINC01414 - long intergenic non-protein coding RNA 1414 ncRNA 465-319 chrX 64954536 64954856 + 2 NA intron (NM_001178032, intron 1 of 4) MER57-int|LTR|ERV1 21754 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 675-8 chr1 215348347 215348906 + 2 NA Intergenic L2|LINE|L2 -218678 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 334-256 chr2 51112265 51112550 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 79806 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 226-154 chr2 22004406 22004593 + 2 NA Intergenic Intergenic -293847 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 362-289 chr4 13011360 13011603 + 2 NA Intergenic Intergenic 472859 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 310-148 chr14 99070981 99071153 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 201130 NM_022898 64919 Hs.709690 NM_022898 ENSG00000127152 BCL11B ATL1|ATL1-alpha|ATL1-beta|ATL1-delta|ATL1-gamma|CTIP-2|CTIP2|IDDFSTA|IMD49|RIT1|ZNF856B|hRIT1-alpha BAF chromatin remodeling complex subunit BCL11B protein-coding 249-213 chr2 132482639 132482782 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 48999 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 916-24 chr4 150714296 150714903 + 2 NA intron (NM_001367550, intron 36 of 56) L1MA8|LINE|L1 132448 NM_006439 10586 Hs.584852 NM_006439 ENSG00000181541 MAB21L2 MCOPS14|MCSKS14 mab-21 like 2 protein-coding 448-229 chr5 166723146 166723559 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger 203018 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 217-389 chr9 79415638 79415822 + 2 NA Intergenic L1MC1|LINE|L1 -156043 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 454-138 chr2 12868186 12868604 + 2 NA Intergenic Intergenic 131028 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 355-432 chr6 59183474 59183675 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1222128 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 338-547 chr8 104256254 104256432 + 2 NA TTS (NM_001348501) TTS (NM_001348501) 33008 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 269-397 chr8 60365381 60365587 + 2 NA Intergenic L1M4b|LINE|L1 48334 NR_103854 100505532 Hs.720321 NR_103854 LINC01301 - long intergenic non-protein coding RNA 1301 ncRNA 229-339 chr6 115262084 115262270 + 2 NA Intergenic Intergenic 381658 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 136-26 chr15 26583513 26583636 + 2 NA intron (NM_001191320, intron 2 of 6) intron (NM_001191320, intron 2 of 6) 45516 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 300-252 chr21 20763222 20763439 + 2 NA intron (NR_109786, intron 6 of 7) L1MEc|LINE|L1 39778 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 571-54 chr16 5348144 5348546 + 2 NA Intergenic Intergenic -250525 NM_001289029 196483 Hs.406461 NM_201400 ENSG00000118894 EEF2KMT EFM3|FAM86A|SB153|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 229-300 chr5 63849736 63849874 + 2 NA Intergenic Intergenic 112487 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 310-364 chr4 41025983 41026149 + 2 NA intron (NM_173075, intron 5 of 16) L1PA14|LINE|L1 -168874 NM_001166054 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 284-216 chr2 175879095 175879369 + 2 NA Intergenic Intergenic 123035 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 375-33 chr10 8532123 8532461 + 2 NA Intergenic Intergenic 62099 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 378-123 chr13 94462903 94463109 + 2 NA intron (NM_001129889, intron 4 of 9) intron (NM_001129889, intron 4 of 9) 16676 NM_001922 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 415-10 chr1 99579371 99579699 + 2 NA intron (NR_031666, intron 1 of 4) intron (NR_031666, intron 1 of 4) -66578 NM_017734 54873 Hs.483993 NM_017734 ENSG00000099260 PALMD C1orf11|PALML palmdelphin protein-coding 143-20 chr12 103348007 103348105 + 2 NA intron (NM_001099336, intron 4 of 5) intron (NM_001099336, intron 4 of 5) 147912 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 149-69 chr3 97797355 97797446 + 2 NA intron (NR_136600, intron 8 of 9) HAL1|LINE|L1 -24611 NM_153605 131544 Hs.733378 NM_153605 ENSG00000080200 CRYBG3 DKFZp667G2110|vlAKAP crystallin beta-gamma domain containing 3 protein-coding 315-250 chr2 106945111 106945406 + 2 NA Intergenic Intergenic -58149 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 318-102 chr11 50191262 50191444 + 2 NA Intergenic AluSx1|SINE|Alu 107109 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 396-288 chr5 104464392 104464745 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -634906 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 365-417 chr8 139052315 139052545 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -138389 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 332-407 chr5 31827558 31827786 + 2 NA intron (NM_178140, intron 2 of 24) AluSz|SINE|Alu 108487 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 517-185 chr3 187093742 187094065 + 2 NA Intergenic L1MA7|LINE|L1 45593 NM_052969 116832 Hs.647900 NM_052969 ENSG00000163923 RPL39L L39-2|RPL39L1 ribosomal protein L39 like protein-coding 535-36 chr11 13536454 13536835 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -40469 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 318-357 chr3 80348365 80348599 + 2 NA Intergenic Intergenic -416415 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 248-49 chr10 95483258 95483472 + 2 NA intron (NM_001290295, intron 2 of 24) intron (NM_001290295, intron 2 of 24) -42185 NM_001290298 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 257-327 chr5 89664406 89664574 + 2 NA Intergenic HAL1M8|LINE|L1 352230 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 473-169 chr3 22929380 22929845 + 2 NA Intergenic Intergenic 272966 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 331-272 chr2 84853261 84853451 + 2 NA intron (NM_001307978, intron 2 of 4) THE1C|LTR|ERVL-MaLR 27728 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 346-257 chr2 136908107 136908378 + 2 NA intron (NM_001316349, intron 2 of 27) (AATTAAT)n|Simple_repeat|Simple_repeat 142697 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 365-154 chr17 73207626 73207864 + 2 NA 3' UTR (NM_032837, exon 3 of 3) 3' UTR (NM_032837, exon 3 of 3) 14690 NM_018714 9382 Hs.103555 NM_018714 ENSG00000166685 COG1 CDG2G|LDLB component of oligomeric golgi complex 1 protein-coding 299-19 chr1 110741373 110741644 + 2 NA Intergenic Intergenic -66568 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 516-214 chr5 153021822 153022095 + 2 NA Intergenic L1M1|LINE|L1 -49609 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 252-432 chr8 114535361 114535577 + 2 NA Intergenic Intergenic -1098530 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 305-568 chr9 137964277 137964433 + 2 NA intron (NM_001243812, intron 10 of 45) L1PA10|LINE|L1 -17295 NR_132978 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 361-480 chr9 82017167 82017398 + 2 NA Intergenic L1MDa|LINE|L1 28510 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 622-43 chr17 69964640 69965121 + 2 NA intron (NR_110875, intron 2 of 4) MLT1J1|LTR|ERVL-MaLR 3173 NR_110874 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 301-230 chr2 151629909 151630064 + 2 NA intron (NM_001271208, intron 67 of 182) intron (NM_001271208, intron 67 of 182) 104490 NM_001271208 4703 Hs.588655 NM_004543 ENSG00000183091 NEB NEB177D|NEM2 nebulin protein-coding 319-473 chr6 120205066 120205260 + 2 NA Intergenic L1PA15|LINE|L1 189984 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 512-219 chr5 72592307 72592770 + 2 NA intron (NR_105007, intron 1 of 2) intron (NR_105007, intron 1 of 2) 35461 NR_105008 102503427 Hs.429280 NR_105008 LOC102503427 - uncharacterized LOC102503427 ncRNA 230-216 chr21 28322489 28322681 + 2 NA Intergenic AluJb|SINE|Alu -93918 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 274-95 chr12 46708960 46709162 + 2 NA Intergenic Intergenic 116936 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 395-50 chr11 4447411 4447712 + 2 NA Intergenic Intergenic -1734 NM_001005172 119774 Hs.553568 NM_001005172 ENSG00000181963 OR52K2 OR11-7 olfactory receptor family 52 subfamily K member 2 protein-coding 372-120 chr12 99207809 99208029 + 2 NA intron (NM_152788, intron 14 of 25) MER57A-int|LTR|ERV1 -52829 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 459-226 chr4 185565806 185566102 + 2 NA Intergenic Intergenic -30396 NR_047562 27295 Hs.701364 NM_014476 ENSG00000154553 PDLIM3 ALP PDZ and LIM domain 3 protein-coding 506-178 chr3 22653088 22653509 + 2 NA Intergenic L1M1|LINE|L1 549280 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 1125-2 chr14 39575214 39576204 + 2 NA Intergenic L1MA4|LINE|L1 -143209 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 233-60 chr11 78683804 78684000 + 2 NA intron (NM_001098816, intron 29 of 33) intron (NM_001098816, intron 29 of 33) -109038 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 633-45 chr15 69890227 69890691 + 2 NA Intergenic Intergenic 55225 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 279-404 chr8 4211878 4212045 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 782953 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 495-231 chr7 16974090 16974505 + 2 NA Intergenic Intergenic -92314 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 427-130 chr2 188881647 188881941 + 2 NA Intergenic L2b|LINE|L2 -91671 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 461-288 chr9 27971828 27972212 + 2 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -398154 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 427-92 chr17 11749469 11749784 + 2 NA intron (NM_001372, intron 32 of 68) L1M5|LINE|L1 -133276 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 945-2 chr1 97954058 97954830 + 2 NA Intergenic Intergenic -12704 NR_146275 109729128 NR_146275 LINC01930 - long intergenic non-protein coding RNA 1930 ncRNA 368-391 chr6 51716442 51716632 + 2 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 94667 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 450-102 chr16 52366538 52366844 + 2 NA Intergenic Intergenic 108127 NR_135281 283854 Hs.266768 NR_135281 ENSG00000260887 CASC22 LINC01373|LincRNA-ENST00000515084|TCONS_00024290 cancer susceptibility 22 ncRNA 360-479 chr8 128159815 128160116 + 2 NA Intergenic L1ME1|LINE|L1 9849 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 159-54 chr21 27642544 27642640 + 2 NA Intergenic Intergenic -79787 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 310-319 chr3 31552363 31552613 + 2 NA intron (NM_178862, intron 1 of 15) intron (NM_178862, intron 1 of 15) 19563 NM_178862 201595 Hs.475812 NM_178862 ENSG00000163527 STT3B CDG1X|SIMP|STT3-B STT3 oligosaccharyltransferase complex catalytic subunit B protein-coding 500-60 chr11 116378254 116378548 + 2 NA Intergenic MER94B|DNA|hAT-Blackjack -261021 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 185-204 chr8 119244225 119244336 + 2 NA 3' UTR (NM_052886, exon 4 of 4) 3' UTR (NM_052886, exon 4 of 4) 2577 NR_149112 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 320-420 chr5 16061449 16061617 + 2 NA Intergenic Intergenic 118258 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 278-158 chr17 53866296 53866491 + 2 NA Intergenic Intergenic 43466 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 760-4 chr1 112338951 112339520 + 2 NA Intergenic Intergenic -56979 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 335-477 chr6 149210101 149210411 + 2 NA Intergenic MIRb|SINE|MIR -7668 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 382-407 chr8 83889490 83889748 + 2 NA Intergenic L1PA8|LINE|L1 -293168 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 266-419 chr8 88094999 88095223 + 2 NA intron (NM_005941, intron 6 of 9) intron (NM_005941, intron 6 of 9) -221096 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 305-393 chr4 81374435 81374702 + 2 NA Intergenic L1MA3|LINE|L1 97339 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 307-451 chr7 53105161 53105366 + 2 NA Intergenic L1M4|LINE|L1 69630 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 313-275 chr2 124996187 124996417 + 2 NA Intergenic Intergenic 971015 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 414-365 chrX 97359187 97359499 + 2 NA intron (NM_007309, intron 24 of 26) intron (NM_007309, intron 24 of 26) 205192 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 198-107 chr19 30958628 30958749 + 2 NA Intergenic Intergenic -208822 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 146-20 chr12 30829761 30829867 + 2 NA Intergenic Intergenic 34133 NR_040245 100287314 Hs.355210 NR_040245 LINC00941 lncRNA-MUF long intergenic non-protein coding RNA 941 ncRNA 446-115 chr17 15270558 15270944 + 2 NA Intergenic Intergenic -5425 NM_001330143 5376 Hs.372031 NM_000304 ENSG00000109099 PMP22 CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110 peripheral myelin protein 22 protein-coding 252-102 chr13 66375370 66375544 + 2 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) 157207 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 372-494 chr8 126150740 126150974 + 2 NA Intergenic L1PA16|LINE|L1 -174638 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 397-26 chr10 23726038 23726358 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 31471 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 365-336 chr5 161171807 161172040 + 2 NA Intergenic L1M2|LINE|L1 -233297 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 400-131 chr17 62837874 62838214 + 2 NA Intergenic L1MD1|LINE|L1 29542 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 323-514 chr7 99828745 99828956 + 2 NA intron (NR_103868, intron 1 of 9) LTR48|LTR|ERV1 837 NR_103869 64816 Hs.306220 NM_022820 ENSG00000021461 CYP3A43 - cytochrome P450 family 3 subfamily A member 43 protein-coding 216-93 chr14 48830262 48830433 + 2 NA Intergenic Intergenic 756033 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 451-177 chr5 68397461 68397815 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 105061 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 322-571 chr9 106514524 106514784 + 2 NA Intergenic L1ME1|LINE|L1 -86274 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 234-143 chr18 38166042 38166181 + 2 NA Intergenic L1MD3|LINE|L1 508976 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 310-202 chr18 52905003 52905193 + 2 NA intron (NM_005215, intron 2 of 28) intron (NM_005215, intron 2 of 28) -332003 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 359-522 chrX 67564722 67565062 + 2 NA intron (NM_001348064, intron 1 of 2) intron (NM_001348064, intron 1 of 2) 20269 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 337-489 chr6 66309389 66309613 + 2 NA Intergenic Intergenic 521622 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 379-156 chr2 38677137 38677511 + 2 NA intron (NM_138801, intron 2 of 6) intron (NM_138801, intron 2 of 6) 11210 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 180-161 chr7 104800121 104800226 + 2 NA intron (NR_034142, intron 2 of 2) intron (NR_034142, intron 2 of 2) 3919 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 311-485 chr8 20286406 20286635 + 2 NA intron (NR_047509, intron 1 of 2) L1ME3A|LINE|L1 10747 NR_047509 100874051 Hs.385799 NR_047509 ENSG00000253733 LZTS1-AS1 - LZTS1 antisense RNA 1 ncRNA 379-333 chr8 47054547 47054886 + 2 NA Intergenic L1PA16|LINE|L1 -134591 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 397-220 chr4 33381796 33382125 + 2 NA Intergenic Intergenic 657933 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 218-152 chr2 66293791 66293982 + 2 NA Intergenic AluJb|SINE|Alu 64442 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 302-48 chr10 61020334 61020558 + 2 NA intron (NR_108052, intron 1 of 1) intron (NR_108052, intron 1 of 1) 4171 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 226-193 chr20 748667 748843 + 2 NA Intergenic L1M4b|LINE|L1 19745 NM_033409 113278 Hs.283865 NM_033409 ENSG00000101276 SLC52A3 BVVLS|BVVLS1|C20orf54|RFT2|RFVT3|bA371L19.1|hRFT2 solute carrier family 52 member 3 protein-coding 461-222 chr5 126080869 126081139 + 2 NA Intergenic L1MA9|LINE|L1 -98573 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 185-12 chr1 181225276 181225428 + 2 NA Intergenic Intergenic -11036 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 259-325 chr5 124960672 124960843 + 2 NA Intergenic MER66B|LTR|ERV1 -76074 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 410-114 chr18 50964527 50964909 + 2 NA Intergenic Intergenic -3322 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 240-168 chr16 59631786 59631940 + 2 NA Intergenic LTR33|LTR|ERVL 123328 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 331-223 chr18 58836726 58837016 + 2 NA Intergenic Intergenic 22991 NR_146904 105372147 Hs.210837 NR_146904 ENSG00000267593 LINC01926 - long intergenic non-protein coding RNA 1926 ncRNA 326-271 chr2 162945735 162946021 + 2 NA Intergenic L1M1|LINE|L1 -107111 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 557-185 chr7 56712631 56713071 + 2 NA Intergenic Intergenic 99885 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 398-113 chr14 89061110 89061370 + 2 NA Intergenic Intergenic 236589 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 238-131 chr16 77073608 77073777 + 2 NA Intergenic L1MD2|LINE|L1 -117498 NM_001286639 22879 Hs.513743 NM_014940 ENSG00000103111 MON1B HSRG1|SAND2|SRG1 MON1 homolog B, secretory trafficking associated protein-coding 472-299 chr7 46001593 46001969 + 2 NA Intergenic L1M3|LINE|L1 -80509 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 294-155 chr16 63986173 63986454 + 2 NA Intergenic Intergenic 1135750 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 367-127 chr14 72740819 72741144 + 2 NA intron (NM_001280544, intron 3 of 9) FLAM_A|SINE|Alu 151668 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 308-528 chr8 137806023 137806177 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 277445 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 392-326 chr8 91847156 91847432 + 2 NA Intergenic L1M3f|LINE|L1 170386 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 250-457 chr9 80860275 80860496 + 2 NA Intergenic FLAM_C|SINE|Alu 829150 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 253-255 chr3 55024276 55024490 + 2 NA intron (NM_018398, intron 35 of 37) MLT1A0|LTR|ERVL-MaLR -57281 NM_001304389 57408 Hs.591668 NM_020678 ENSG00000144771 LRTM1 HT017 leucine rich repeats and transmembrane domains 1 protein-coding 363 chr1 5202949 5203277 + 2 NA Intergenic Intergenic 548504 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 316-454 chr5 113475197 113475369 + 2 NA intron (NM_001085377, intron 1 of 18) intron (NM_001085377, intron 1 of 18) 13170 NM_001085377 4163 Hs.593171 NM_002387 ENSG00000171444 MCC MCC1 MCC regulator of WNT signaling pathway protein-coding 422-199 chr3 177892826 177893139 + 2 NA intron (NR_110826, intron 1 of 2) intron (NR_110826, intron 1 of 2) 76117 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 301-89 chr12 29031454 29031725 + 2 NA Intergenic Intergenic -117689 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 533-202 chr6 123974910 123975361 + 2 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 171270 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 193-127 chr20 14774564 14774714 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 154879 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 324-279 chr2 123963054 123963239 + 2 NA Intergenic L1PB|LINE|L1 62028 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 317-550 chrX 98626599 98626841 + 2 NA Intergenic L1MEd|LINE|L1 -1062185 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 362-77 chr10 109237321 109237593 + 2 NA Intergenic Intergenic 685789 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 174-37 chr13 69677524 69677660 + 2 NA Intergenic Intergenic -429621 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 118-47 chr6 65507109 65507190 + 2 NA intron (NM_001292009, intron 2 of 43) L1MCa|LINE|L1 72655 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 353-468 chr6 155937665 155937864 + 2 NA Intergenic Intergenic -9033 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 323-475 chr6 156062040 156062210 + 2 NA Intergenic Intergenic 115328 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 286-405 chr7 17553173 17553333 + 2 NA intron (NR_110013, intron 1 of 3) L1ME1|LINE|L1 5656 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 343-463 chr6 48173672 48173974 + 2 NA Intergenic Intergenic -105134 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 304-171 chr15 95702257 95702423 + 2 NA Intergenic AluJr|SINE|Alu 269247 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 240-98 chr12 5702875 5703089 + 2 NA intron (NM_001278596, intron 15 of 25) L1ME3Cz|LINE|L1 208850 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 318-326 chr21 16366673 16366963 + 2 NA intron (NR_027790, intron 4 of 7) intron (NR_027790, intron 4 of 7) -52385 NR_136544 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 375-260 chr3 10768249 10768567 + 2 NA Intergenic Intergenic -4199 NR_027102 285370 Hs.157613 NR_027102 ENSG00000226567 LINC00606 - long intergenic non-protein coding RNA 606 ncRNA 270-83 chr12 41712056 41712298 + 2 NA Intergenic Intergenic -52012 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 255-421 chr8 80943800 80944003 + 2 NA Intergenic Intergenic -69120 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 507-55 chr11 77271926 77272263 + 2 NA intron (NM_182833, intron 5 of 16) L1M5|LINE|L1 29572 NM_182833 220032 Hs.249795 NM_182833 ENSG00000178795 GDPD4 GDE6 glycerophosphodiester phosphodiesterase domain containing 4 protein-coding 400-44 chr10 130787060 130787329 + 2 NA Intergenic Intergenic 175474 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 255-146 chr16 54568499 54568673 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -197887 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 311-511 chr8 91430066 91430251 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 180839 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 272-27 chr1 218580868 218581106 + 2 NA intron (NR_031644, intron 2 of 6) MER21C|LTR|ERVL 70892 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 261-264 chr3 180989881 180990056 + 2 NA promoter-TSS (NM_145261) promoter-TSS (NM_145261) -194 NR_046073 131118 Hs.230601 NM_145261 ENSG00000205981 DNAJC19 PAM18|TIM14|TIMM14 DnaJ heat shock protein family (Hsp40) member C19 protein-coding 366-395 chr6 169414827 169415034 + 2 NA Intergenic L1ME3|LINE|L1 -160816 NM_003247 7058 Hs.371147 NM_003247 ENSG00000186340 THBS2 TSP2 thrombospondin 2 protein-coding 623-52 chr19 56585933 56586484 + 2 NA Intergenic Intergenic -9088 NM_021216 58491 Hs.301431 NM_021216 ENSG00000197951 ZNF71 EZFIT zinc finger protein 71 protein-coding 705-72 chr4 18419131 18419650 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -397515 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 208-98 chr18 56056957 56057108 + 2 NA intron (NR_148972, intron 4 of 8) L1MC5a|LINE|L1 14754 NR_146510 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 337-85 chr11 43087114 43087403 + 2 NA Intergenic L1M2|LINE|L1 182111 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 384-197 chr2 232028933 232029303 + 2 NA intron (NR_046477, intron 4 of 18) intron (NR_046477, intron 4 of 18) 67405 NM_001257281 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 714-20 chr14 66831082 66831620 + 2 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) 323944 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 255-344 chr5 158243463 158243676 + 2 NA Intergenic Intergenic 166204 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 227-111 chr14 70740359 70740529 + 2 NA intron (NM_033141, intron 6 of 12) intron (NM_033141, intron 6 of 12) 41746 NR_125769 103695436 Hs.572296 NR_125769 ENSG00000258689 LINC01269 - long intergenic non-protein coding RNA 1269 ncRNA 352-425 chr5 109664449 109664669 + 2 NA Intergenic Intergenic -24807 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 285-314 chr4 162150475 162150642 + 2 NA intron (NM_001128428, intron 1 of 14) intron (NM_001128428, intron 1 of 14) 13442 NM_020116 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 397-137 chr19 54024729 54025065 + 2 NA Intergenic MLT1G|LTR|ERVL-MaLR 32609 NM_031897 59285 Hs.631560 NM_031897 ENSG00000130433 CACNG6 - calcium voltage-gated channel auxiliary subunit gamma 6 protein-coding 361-102 chr12 42405418 42405691 + 2 NA intron (NM_016488, intron 9 of 12) (TTCTCT)n|Simple_repeat|Simple_repeat 73756 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 251-399 chr8 115081129 115081357 + 2 NA Intergenic Intergenic 586770 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 324-185 chr15 69740354 69740661 + 2 NA Intergenic Intergenic -94727 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 327-363 chr4 61032176 61032354 + 2 NA Intergenic Intergenic 109646 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 638-110 chr4 174409828 174410336 + 2 NA Intergenic L1M4|LINE|L1 -13713 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 419-127 chr19 24289628 24289890 + 2 NA Intergenic ALR/Alpha|Satellite|centr -126312 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 446-128 chr18 7093329 7093667 + 2 NA intron (NM_005559, intron 1 of 62) intron (NM_005559, intron 1 of 62) 24299 NM_005559 284217 Hs.270364 NM_005559 ENSG00000101680 LAMA1 LAMA|PTBHS|S-LAM-alpha laminin subunit alpha 1 protein-coding 539-203 chr8 36503763 36504164 + 2 NA Intergenic Intergenic -280411 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 279-248 chr3 20434780 20434949 + 2 NA Intergenic Intergenic 92396 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 390-194 chr2 118495569 118495875 + 2 NA Intergenic Intergenic 107244 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 551-93 chr2 101102523 101103030 + 2 NA intron (NM_001102426, intron 1 of 19) FLAM_C|SINE|Alu 48671 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 252-141 chr16 12177406 12177577 + 2 NA intron (NM_032167, intron 13 of 20) intron (NM_032167, intron 13 of 20) 200757 NM_032167 92017 Hs.458401 NM_032167 ENSG00000048471 SNX29 A-388D4.1|RUNDC2A sorting nexin 29 protein-coding 404-52 chr10 97514893 97515095 + 2 NA intron (NM_024954, intron 1 of 2) intron (NM_024954, intron 1 of 2) 16070 NM_024954 80019 Hs.500724 NM_024954 ENSG00000165886 UBTD1 - ubiquitin domain containing 1 protein-coding 398-317 chr7 24947339 24947650 + 2 NA intron (NM_015550, intron 1 of 22) intron (NM_015550, intron 1 of 22) 32684 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 202-138 chr20 867188 867360 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie 22631 NM_031424 83541 Hs.574822 NM_031424 ENSG00000125898 FAM110A C20orf55|F10|bA371L19.3 family with sequence similarity 110 member A protein-coding 261-267 chr4 3669994 3670204 + 2 NA Intergenic Intergenic 7756 NR_034136 100133461 Hs.554274 NR_034136 ENSG00000250632 LINC02171 - long intergenic non-protein coding RNA 2171 ncRNA 219-192 chr2 228462675 228462839 + 2 NA Intergenic HAL1|LINE|L1 148638 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 319-264 chr2 145895961 145896231 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -690961 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 512-7 chr1 98625862 98626342 + 2 NA Intergenic L2a|LINE|L2 -35619 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 502-29 chr10 18779914 18780295 + 2 NA Intergenic Intergenic 120673 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 408-103 chr14 47324417 47324716 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) 18680 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 227-272 chr5 6789915 6790115 + 2 NA Intergenic Intergenic -5865 NR_146281 109729133 Hs.582455 NR_146281 ENSG00000251365 LINC02236 - long intergenic non-protein coding RNA 2236 ncRNA 281-436 chr8 108843027 108843250 + 2 NA Intergenic MIR|SINE|MIR -55544 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 334-340 chr3 42363230 42363487 + 2 NA Intergenic L1MC5a|LINE|L1 47252 NM_001304386 131375 Hs.234895 NM_144634 ENSG00000157093 LYZL4 LYC4|LYZA lysozyme like 4 protein-coding 332-56 chr10 39246882 39247086 + 2 NA Intergenic ALR/Alpha|Satellite|centr 550388 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 317-320 chr3 166668896 166669112 + 2 NA Intergenic Intergenic -229679 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 327-176 chr15 83237729 83237927 + 2 NA Intergenic L1M2|LINE|L1 -30005 NM_016073 50810 Hs.513954 NM_016073 ENSG00000166503 HDGFL3 CGI-142|HDGF-2|HDGF2|HDGFRP3|HRP-3 HDGF like 3 protein-coding 338-125 chr12 44990812 44991062 + 2 NA Intergenic L1MA8|LINE|L1 60162 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 264-327 chr5 75344990 75345204 + 2 NA intron (NM_001364187, intron 4 of 19) L1ME4a|LINE|L1 7877 NM_000859 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 423-139 chr2 124550560 124550935 + 2 NA intron (NM_130773, intron 10 of 23) intron (NM_130773, intron 10 of 23) 525460 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 496-179 chr3 83197240 83197610 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 1211283 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 257-262 chr3 36847978 36848227 + 2 NA intron (NM_001329998, intron 15 of 23) MER58B|DNA|hAT-Charlie -25602 NR_147141 105377031 Hs.333862 NR_147141 ENSG00000279727 LINC02033 - long intergenic non-protein coding RNA 2033 ncRNA 285-313 chr4 152712609 152712807 + 2 NA Intergenic L1MA6|LINE|L1 -32711 NM_152680 201799 Hs.518900 NM_152680 ENSG00000170006 TMEM154 - transmembrane protein 154 protein-coding 436-126 chr2 21116609 21116859 + 2 NA Intergenic Intergenic -7252 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 218-60 chr11 112417864 112418014 + 2 NA Intergenic L2c|LINE|L2 -64293 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 600-50 chr18 26855478 26855962 + 2 NA 3' UTR (NM_001317387, exon 4 of 4) 3' UTR (NM_001317387, exon 4 of 4) 7190 NM_001364289 361 Hs.315369 NM_001650 ENSG00000171885 AQP4 MIWC|WCH4 aquaporin 4 protein-coding 292-75 chr11 69462158 69462353 + 2 NA Intergenic Intergenic -23306 NR_120542 101928292 Hs.736219 NR_120542 LINC01488 BRCAT8 long intergenic non-protein coding RNA 1488 ncRNA 357-215 chr2 129543222 129543461 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -269450 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 276-287 chr3 34959490 34959664 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 434446 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 292-375 chr6 39022084 39022303 + 2 NA intron (NM_001371, intron 90 of 91) intron (NM_001371, intron 90 of 91) -26588 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 550-84 chr16 63711747 63712170 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 1410105 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 156-91 chr6 66332278 66332403 + 2 NA Intergenic L1ME2|LINE|L1 544461 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 336-343 chr21 31146989 31147224 + 2 NA intron (NM_001353684, intron 4 of 12) intron (NM_001353684, intron 4 of 12) 13834 NM_001353684 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 482-119 chr2 29539583 29540002 + 2 NA intron (NM_004304, intron 3 of 28) LTR49-int|LTR|ERV1 -64415 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 541-237 chr8 103545243 103545642 + 2 NA intron (NM_001348497, intron 1 of 22) L1PA15|LINE|L1 -43532 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 417-66 chr12 118752156 118752426 + 2 NA Intergenic Intergenic 9388 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 152-55 chr2 181495624 181495763 + 2 NA intron (NM_000885, intron 13 of 27) intron (NM_000885, intron 13 of 27) 38307 NM_000885 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 313-546 chr8 138137185 138137412 + 2 NA intron (NM_015912, intron 18 of 19) intron (NM_015912, intron 18 of 19) -53753 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 171-114 chr6 89862236 89862403 + 2 NA exon (NM_001137668, exon 7 of 10) exon (NM_001137668, exon 7 of 10) -32150 NM_032602 84694 Hs.334499 NM_032602 ENSG00000135355 GJA10 CX62 gap junction protein alpha 10 protein-coding 384-196 chr2 227157650 227157976 + 2 NA intron (NM_000092, intron 1 of 47) L1ME2|LINE|L1 6746 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 364-220 chr2 118235019 118235218 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -48732 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 282-179 chr18 56258249 56258437 + 2 NA Intergenic Intergenic -67081 NR_148972 642484 NR_148972 ENSG00000206129 LOC642484 - uncharacterized LOC642484 ncRNA 396-231 chr3 122150998 122151372 + 2 NA Intergenic L1ME3G|LINE|L1 -32483 NM_000388 846 Hs.435615 NM_000388 ENSG00000036828 CASR CAR|EIG8|FHH|FIH|GPRC2A|HHC|HHC1|HYPOC1|NSHPT|PCAR1|hCasR calcium sensing receptor protein-coding 452-46 chr11 81716144 81716479 + 2 NA Intergenic Intergenic 174525 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 233-10 chr1 118005401 118005565 + 2 NA exon (NM_206996, exon 32 of 49) exon (NM_206996, exon 32 of 49) 75744 NM_006784 10885 Hs.310809 NM_006784 ENSG00000065183 WDR3 DIP2|UTP12 WD repeat domain 3 protein-coding 216-350 chr9 79104738 79104936 + 2 NA Intergenic Intergenic 40829 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 802-17 chr14 45848316 45848927 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -133019 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 232-29 chr10 52832500 52832658 + 2 NA Intergenic L1MA4|LINE|L1 -60879 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 650-125 chr8 81343744 81344236 + 2 NA Intergenic Intergenic 63454 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 308-173 chr16 63224557 63224859 + 2 NA Intergenic Intergenic -1188270 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 268-213 chr2 155920312 155920459 + 2 NA Intergenic Intergenic 334546 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 264-381 chr7 21522325 21522515 + 2 NA Intergenic AluJb|SINE|Alu -20619 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 381-29 chr1 227589290 227589512 + 2 NA intron (NR_102302, intron 2 of 5) L1PA11|LINE|L1 25845 NM_001367910 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 574-107 chr3 45300403 45300805 + 2 NA Intergenic MLT2A1|LTR|ERVL -74317 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 215-285 chr7 3961243 3961390 + 2 NA intron (NM_152744, intron 8 of 44) intron (NM_152744, intron 8 of 44) -168369 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 430-342 chrX 64974426 64974709 + 2 NA intron (NM_001178032, intron 1 of 4) L1MDa|LINE|L1 1883 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 380-373 chr7 115687861 115688202 + 2 NA Intergenic Intergenic -106590 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 336-588 chr9 115774847 115775134 + 2 NA Intergenic MIRb|SINE|MIR -30751 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 486-298 chr8 129288655 129289043 + 2 NA Intergenic Intergenic -47609 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 263-216 chr2 134055258 134055492 + 2 NA Intergenic Intergenic -64560 NM_001371457 178-102 chr4 94673046 94673156 + 2 NA Intergenic Intergenic 84432 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 248-86 chr12 60784744 60784955 + 2 NA Intergenic L1MA7|LINE|L1 1095479 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 263-234 chr20 52874384 52874621 + 2 NA Intergenic LTR82B|LTR|ERVL -97856 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 313-485 chr7 7138126 7138379 + 2 NA Intergenic L2a|LINE|L2 -41466 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 346-239 chr2 59334272 59334571 + 2 NA Intergenic Intergenic 116713 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 172-119 chr7 3794051 3794164 + 2 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -335578 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 292-135 chr14 46382377 46382595 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -88873 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 216-357 chrX 40259192 40259384 + 2 NA Intergenic Intergenic -3629 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 292-291 chr3 99887517 99887721 + 2 NA intron (NM_001042459, intron 4 of 4) intron (NM_001042459, intron 4 of 4) -11416 NM_014890 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 334-189 chr16 21663112 21663405 + 2 NA promoter-TSS (NM_144672).3 promoter-TSS (NM_144672).3 -710 NM_144672 146183 Hs.408336 NM_144672 ENSG00000155719 OTOA CT108|DFNB22 otoancorin protein-coding 304-131 chr13 112123298 112123505 + 2 NA Intergenic L1MEf|LINE|L1 16282 NR_120394 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 617-33 chr14 41002652 41003134 + 2 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 48182 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 422-259 chr6 62076381 62076664 + 2 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 209703 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 339-110 chr11 104972314 104972502 + 2 NA Intergenic MER4B-int|LTR|ERV1 -3834 NM_001225 837 Hs.138378 NM_001225 ENSG00000196954 CASP4 ICE(rel)II|ICEREL-II|ICH-2|Mih1|Mih1/TX|TX caspase 4 protein-coding 321-610 chrX 40223164 40223480 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -39595 NR_110386 101927476 Hs.522607 NR_110386 ENSG00000236393 LOC101927476 - uncharacterized LOC101927476 ncRNA 406-176 chr21 30431012 30431286 + 2 NA TTS (NM_181600) TTS (NM_181600) 895 NM_181600 284827 Hs.553677 NM_181600 ENSG00000186971 KRTAP13-4 KAP13.4 keratin associated protein 13-4 protein-coding 320-599 chr9 125799629 125799894 + 2 NA intron (NR_024122, intron 2 of 7) intron (NR_024122, intron 2 of 7) 51578 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 350-393 chr5 51242873 51243112 + 2 NA Intergenic Intergenic 140340 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 365-260 chr3 75159840 75160181 + 2 NA Intergenic Intergenic -54466 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 369-411 chr8 91688439 91688641 + 2 NA Intergenic MER21B|LTR|ERVL 329140 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 466-281 chr8 132225220 132225534 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) -120112 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 536-234 chr8 114999305 114999663 + 2 NA Intergenic Intergenic 668529 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 335-220 chr19 22858580 22858831 + 2 NA TTS (NM_001349726) TTS (NM_001349726) 26414 NM_001349726 646864 NM_001349726 ENSG00000268696 ZNF723 ZNF723P zinc finger protein 723 protein-coding 538-242 chr8 119300323 119300740 + 2 NA Intergenic L1MA8|LINE|L1 -24640 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 493-141 chr2 53318947 53319321 + 2 NA Intergenic Intergenic -448649 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 385-208 chr20 31325868 31326063 + 2 NA Intergenic L1MA9|LINE|L1 -17380 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 250-307 chr4 61636818 61637004 + 2 NA intron (NM_001371343, intron 5 of 23) L1ME2z|LINE|L1 434739 NM_001371342 659-64 chr20 60892399 60892798 + 2 NA Intergenic Intergenic -186466 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 201-46 chr11 47511376 47511513 + 2 NA intron (NM_001330272, intron 1 of 15) intron (NM_001330272, intron 1 of 15) 12544 NM_001172639 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 369-435 chr8 144029500 144029736 + 2 NA intron (NM_198572, intron 1 of 4) L1MB7|LINE|L1 17338 NM_001134374 375686 Hs.97726 NM_198572 ENSG00000186583 SPATC1 SPATA15 spermatogenesis and centriole associated 1 protein-coding 391-169 chr2 59643285 59643574 + 2 NA Intergenic L1ME3|LINE|L1 425721 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 339-554 chr8 21526899 21527188 + 2 NA Intergenic Intergenic 228804 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 208-276 chr8 131084967 131085116 + 2 NA Intergenic MER4C|LTR|ERV1 -44132 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 203-111 chr2 71868527 71868693 + 2 NA Intergenic L1MC1|LINE|L1 279252 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 220-269 chr4 166639823 166640024 + 2 NA Intergenic LTR40b|LTR|ERVL 594503 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 255-56 chr11 24180894 24181112 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -316050 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 559-173 chr7 72485574 72485930 + 2 NA Intergenic AluSq|SINE|Alu -38609 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 184-111 chr3 8497383 8497521 + 2 NA intron (NR_033378, intron 2 of 3) MER33|DNA|hAT-Charlie 4206 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 236-121 chr14 87019609 87019783 + 2 NA Intergenic MIRc|SINE|MIR 113918 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 357-493 chrX 68001858 68002143 + 2 NA Intergenic MER110-int|LTR|ERV1 431495 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 428-89 chr17 11679278 11679571 + 2 NA intron (NM_001372, intron 17 of 68) intron (NM_001372, intron 17 of 68) 80954 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 460-281 chr8 15948128 15948525 + 2 NA Intergenic Intergenic 237946 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 332-323 chr3 50907849 50908162 + 2 NA intron (NM_004947, intron 4 of 52) L1PA11|LINE|L1 232925 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 541-119 chr2 80972788 80973201 + 2 NA Intergenic L1PA16|LINE|L1 493952 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 292-67 chr11 19015017 19015218 + 2 NA Intergenic L1M3|LINE|L1 44900 NM_001303615 117194 Hs.350566 NM_054030 ENSG00000183695 MRGPRX2 MGRG3|MRGX2 MAS related GPR family member X2 protein-coding 372-186 chr17 52961469 52961723 + 2 NA Intergenic MLT2B2|LTR|ERVL -23909 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 377-255 chr21 19774762 19775053 + 2 NA Intergenic Intergenic 124848 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 404-298 chr7 114909450 114909689 + 2 NA Intergenic L1MA3|LINE|L1 -12585 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 243-114 chr13 93125085 93125254 + 2 NA Intergenic Intergenic 79828 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 260-281 chr3 110160539 110160735 + 2 NA Intergenic MER3|DNA|hAT-Charlie 557809 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 319-349 chr3 179596490 179596751 + 2 NA intron (NM_020409, intron 4 of 6) intron (NM_020409, intron 4 of 6) 8018 NM_020409 57129 Hs.283734 NM_020409 ENSG00000136522 MRPL47 CGI-204|L47mt|MRP-L47|NCM1 mitochondrial ribosomal protein L47 protein-coding 513-136 chr2 114095826 114096200 + 2 NA Intergenic L1MB7|LINE|L1 -116029 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 174-57 chr18 38282268 38282367 + 2 NA Intergenic MER4D|LTR|ERV1 625182 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 248-45 chr10 79974027 79974222 + 2 NA Intergenic Intergenic -25019 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 184-135 chr5 60628748 60628897 + 2 NA intron (NM_001145208, intron 7 of 9) intron (NM_001145208, intron 7 of 9) 71344 NM_001145208 55789 Hs.482233 NM_018369 ENSG00000035499 DEPDC1B BRCC3|XTP1 DEP domain containing 1B protein-coding 182-2 chr1 41108332 41108495 + 2 NA intron (NM_001172222, intron 4 of 10) intron (NM_001172222, intron 4 of 10) 53019 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 276-316 chr3 191677451 191677614 + 2 NA Intergenic L1ME1|LINE|L1 216369 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 377-284 chr4 37342224 37342424 + 2 NA intron (NM_001144990, intron 2 of 6) MSTB|LTR|ERVL-MaLR 97581 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 332-51 chr10 23769488 23769725 + 2 NA intron (NM_001098500, intron 1 of 18) LTR8|LTR|ERV1 74879 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 290-411 chr7 31678478 31678728 + 2 NA Intergenic MIRb|SINE|MIR -8414 NM_001145123 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 402-79 chr14 44732624 44732886 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 66371 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 266-265 chr3 158460168 158460339 + 2 NA intron (NM_001271838, intron 6 of 9) intron (NM_001271838, intron 6 of 9) -66455 NR_148407 110599565 NR_148407 UC.134 - long non-coding RNA uc.134 ncRNA 398-385 chr9 84519326 84519542 + 2 NA Intergenic Intergenic -149024 NM_006180 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 337-592 chr9 122105414 122105724 + 2 NA Intergenic MIRb|SINE|MIR -11963 NM_001139442 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 278-281 chr3 95347076 95347234 + 2 NA Intergenic Intergenic 336038 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 359-443 chr7 23617844 23618044 + 2 NA intron (NM_138771, intron 3 of 3) MER2|DNA|TcMar-Tigger 20562 NM_138771 90693 Hs.232296 NM_138771 ENSG00000169193 CCDC126 - coiled-coil domain containing 126 protein-coding 490-27 chr1 182566428 182566743 + 2 NA Intergenic L1MB8|LINE|L1 22671 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 517-191 chr4 52695070 52695489 + 2 NA Intergenic L1PA15|LINE|L1 -17115 NR_145129 57291 Hs.744077 NR_024031 ENSG00000226950 DANCR AGU2|ANCR|KIAA0114|SNHG13|lncRNA-ANCR differentiation antagonizing non-protein coding RNA ncRNA 340-273 chr2 110882839 110883162 + 2 NA intron (NM_001371254, intron 10 of 18) intron (NM_001371254, intron 10 of 18) 150427 NM_001371254 422 chr1 14516468 14516838 + 2 NA Intergenic L2c|LINE|L2 -82032 NM_201628 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 270-375 chr8 16516627 16516816 + 2 NA Intergenic Intergenic -323930 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 360-137 chr15 33481927 33482172 + 2 NA intron (NM_001243996, intron 2 of 102) L1MEf|LINE|L1 171082 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 274-318 chr5 123912620 123912795 + 2 NA Intergenic Intergenic 367290 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 535-38 chr11 24895032 24895530 + 2 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 398228 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 303-331 chr4 135846577 135846867 + 2 NA Intergenic Intergenic 41371 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 356-145 chr14 53066335 53066558 + 2 NA intron (NM_030637, intron 6 of 11) intron (NM_030637, intron 6 of 11) 86877 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 439-247 chr6 61745775 61746010 + 2 NA intron (NR_146874, intron 6 of 13) intron (NR_146874, intron 6 of 13) 171762 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 396-274 chr5 23382459 23382797 + 2 NA Intergenic L1PA6|LINE|L1 -124981 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 413-308 chr8 110084332 110084613 + 2 NA Intergenic L1P4|LINE|L1 -108701 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 318-594 chrX 95143989 95144253 + 2 NA Intergenic L1M3b|LINE|L1 -80895 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 328-391 chr4 33507931 33508129 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 531863 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 414-252 chr4 172241336 172241673 + 2 NA intron (NM_001034845, intron 3 of 12) intron (NM_001034845, intron 3 of 12) -427897 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 336-259 chr2 33694145 33694314 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -12657 NR_126403 104355287 Hs.636582 NR_126403 ENSG00000228262 LINC01317 - long intergenic non-protein coding RNA 1317 ncRNA 308-80 chr11 23721029 23721265 + 2 NA Intergenic Intergenic -301957 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 340-224 chr19 43869004 43869328 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 10970 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 158-100 chr6 48395050 48395163 + 2 NA Intergenic L1PA13|LINE|L1 -326417 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 781-23 chr16 61316532 61317025 + 2 NA Intergenic L1MCa|LINE|L1 -261012 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 591-100 chr3 145655101 145655606 + 2 NA Intergenic L1M1|LINE|L1 413832 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 369-410 chr8 89256721 89256973 + 2 NA Intergenic L1PA16|LINE|L1 500864 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 332-586 chrX 56538795 56539072 + 2 NA Intergenic L1M1|LINE|L1 -24660 NM_013444 29978 Hs.179309 NM_013444 ENSG00000188021 UBQLN2 ALS15|CHAP1|DSK2|HRIHFB2157|N4BP4|PLIC2 ubiquilin 2 protein-coding 332-265 chr2 128655653 128655910 + 2 NA Intergenic L1MD1|LINE|L1 -208819 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 382-165 chr19 53356127 53356327 + 2 NA TTS (NM_001321522) TTS (NM_001321522) -9478 NR_145445 170958 Hs.352638 NM_001348156 ENSG00000203326 ZNF525 - zinc finger protein 525 protein-coding 227-395 chr9 73683629 73683795 + 2 NA Intergenic L1M1|LINE|L1 531847 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 249-120 chr14 60176516 60176758 + 2 NA Intergenic LTR78B|LTR|ERV1 -6773 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 372-262 chr2 147273097 147273340 + 2 NA Intergenic Intergenic -571299 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 405-223 chr4 46624734 46624993 + 2 NA Intergenic L1M3a|LINE|L1 -234735 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 216-263 chr4 146801353 146801480 + 2 NA intron (NR_133922, intron 12 of 13) intron (NR_133922, intron 12 of 13) 144448 NM_001300761 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 239-227 chr22 34000686 34000859 + 2 NA Intergenic L1MEg|LINE|L1 -77884 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 187-73 chr18 72245686 72245843 + 2 NA Intergenic Intergenic 298578 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 507-276 chr9 91551982 91552387 + 2 NA Intergenic MLT2D|LTR|ERVL -84067 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 213-223 chr5 19409666 19409847 + 2 NA Intergenic L1PA13|LINE|L1 476516 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 411-9 chr1 96449233 96449586 + 2 NA Intergenic L1ME3|LINE|L1 -75284 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 166-100 chr5 119256831 119256963 + 2 NA Intergenic L1MEf|LINE|L1 -11862 NM_001286815 25816 Hs.618488 NM_014350 ENSG00000145779 TNFAIP8 GG2-1|MDC-3.13|NDED|SCC-S2|SCCS2 TNF alpha induced protein 8 protein-coding 374-28 chr10 10398300 10398629 + 2 NA Intergenic Intergenic 63885 NR_120637 101928322 Hs.576789 NR_120637 ENSG00000270111 CELF2-DT - CELF2 divergent transript ncRNA 249-473 chrX 110635718 110635907 + 2 NA Intergenic Intergenic 115500 NR_002718 6998 Hs.592361 NR_002718 ENSG00000225366 TDGF1P3 CR-3|CRIPTO|CRIPTO-3|CRIPTO3|TDGF1|TDGF2|TDGF3 teratocarcinoma-derived growth factor 1 pseudogene 3 pseudo 353-215 chr18 70227243 70227526 + 2 NA Intergenic LTR8B|LTR|ERV1 -21697 NM_173630 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 407-217 chr4 31810172 31810386 + 2 NA Intergenic Intergenic -187100 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 328-279 chr2 134603256 134603456 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 115644 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 171-47 chr17 71363833 71363978 + 2 NA Intergenic Intergenic -161726 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 323-201 chr18 46804166 46804421 + 2 NA non-coding (NR_148702, exon 13 of 13) non-coding (NR_148702, exon 13 of 13) -47240 NM_001307986 29906 Hs.465025 NM_013305 ENSG00000101638 ST8SIA5 SIAT8-E|SIAT8E|ST8SiaV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5 protein-coding 766-46 chr21 22742169 22742830 + 2 NA Intergenic Intergenic -336785 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 167-3 chr1 36633962 36634122 + 2 NA Intergenic L1MA9|LINE|L1 -150728 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 353-418 chr5 105909714 105910015 + 2 NA Intergenic MIR|SINE|MIR 810390 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 339-56 chr10 30843219 30843535 + 2 NA Intergenic Intergenic 120158 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 333-212 chr19 29502814 29502996 + 2 NA intron (NR_040029, intron 1 of 9) intron (NR_040029, intron 1 of 9) 22847 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 301-306 chr4 33068817 33069107 + 2 NA Intergenic MER70A|LTR|ERVL 717924 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 276-151 chr14 72405310 72405537 + 2 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -111397 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 128-9 chr10 83729569 83729680 + 2 NA Intergenic Intergenic -52535 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 166-87 chr4 111732733 111732857 + 2 NA Intergenic L3|LINE|CR1 -412659 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 224-318 chr8 60605115 60605254 + 2 NA intron (NM_002865, intron 6 of 7) MSTA-int|LTR|ERVL-MaLR -73556 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 292-6 chr1 39911801 39911969 + 2 NA Intergenic AluJb|SINE|Alu -9968 NM_005376 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 MYCL proto-oncogene, bHLH transcription factor protein-coding 199-48 chr12 113657794 113657985 + 2 NA Intergenic Intergenic 115794 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 383-334 chr6 38957298 38957518 + 2 NA intron (NM_001371, intron 81 of 91) L1MA6|LINE|L1 -4301 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 200-203 chr5 23359279 23359445 + 2 NA Intergenic Intergenic -148247 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 327-22 chr1 186239002 186239268 + 2 NA Intergenic Intergenic -57138 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 247-177 chr19 44281492 44281685 + 2 NA Intergenic LOR1-int|LTR|ERV1 21674 NM_181756 353355 Hs.466891 NM_181756 ENSG00000159915 ZNF233 - zinc finger protein 233 protein-coding 345-408 chr5 12470469 12470658 + 2 NA Intergenic L1PREC2|LINE|L1 -104294 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 375-286 chr4 58430671 58431035 + 2 NA Intergenic L1PA14|LINE|L1 105475 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 340-90 chr11 110377020 110377235 + 2 NA intron (NR_135100, intron 2 of 3) MER57B2|LTR|ERV1 22013 NR_135100 105369486 Hs.611557 NR_135100 LINC02732 - long intergenic non-protein coding RNA 2732 ncRNA 152-2 chr1 26666924 26667047 + 2 NA Intergenic Intergenic 27146 NR_135804 101928728 Hs.128770 NR_135804 ENSG00000260063 LOC101928728 - uncharacterized LOC101928728 ncRNA 451-58 chr14 40962593 40962956 + 2 NA intron (NR_109758, intron 1 of 3) intron (NR_109758, intron 1 of 3) 8063 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 311-113 chr12_GL877875v1_alt 49243 49535 + 2 NA Intergenic L1ME1|LINE|L1 -11393 NM_001170738 440073 Hs.536319 NM_015232 ENSG00000120645 IQSEC3 - IQ motif and Sec7 domain 3 protein-coding 516-218 chr5 162897747 162898110 + 2 NA Intergenic L1P4e|LINE|L1 -539643 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 620-41 chr15 27718078 27718546 + 2 NA Intergenic Intergenic 381003 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 340-39 chr1 247001900 247002087 + 2 NA intron (NR_037894, intron 1 of 6) L1PA15|LINE|L1 6064 NM_001204221 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 321-6 chr1 37188194 37188406 + 2 NA Intergenic Intergenic 26737 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 409-310 chr9 77136763 77137143 + 2 NA Intergenic Intergenic -40492 NM_001018038 23230 Hs.459790 NM_015186 ENSG00000197969 VPS13A CHAC|CHOREIN vacuolar protein sorting 13 homolog A protein-coding 284-271 chr3 173239251 173239462 + 2 NA Intergenic Tigger9a|DNA|TcMar-Tigger -98121 NM_031955 83893 Hs.444236 NM_031955 ENSG00000144962 SPATA16 NYD-SP12|SPGF6 spermatogenesis associated 16 protein-coding 416-56 chr10 106163537 106163797 + 2 NA TTS (NR_134329) TTS (NR_134329) 23502 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 330-331 chr21 31011997 31012248 + 2 NA Intergenic L1MEg|LINE|L1 26354 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 269-425 chr9 80361309 80361535 + 2 NA Intergenic Intergenic 386399 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 261-357 chr7 70889761 70889926 + 2 NA Intergenic Intergenic -242301 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 251-7 chr1 79957816 79958004 + 2 NA Intergenic Intergenic -577845 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 389-304 chr5 156867704 156868026 + 2 NA Intergenic MER39B|LTR|ERV1 17570 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 621-29 chr13 71122273 71122741 + 2 NA intron (NR_047699, intron 1 of 3) L2a|LINE|L2 107366 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 358-346 chr4 117679219 117679452 + 2 NA intron (NR_125757, intron 3 of 3) THE1B-int|LTR|ERVL-MaLR -155066 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 180-73 chr19 16361495 16361615 + 2 NA TTS (NR_047666) TTS (NR_047666) 36729 NM_016270 10365 Hs.685136 NM_016270 ENSG00000127528 KLF2 LKLF Kruppel like factor 2 protein-coding 665-110 chr8 132076239 132076748 + 2 NA exon (NM_001145095, exon 12 of 16) exon (NM_001145095, exon 12 of 16) -17111 NM_001080399 729330 Hs.653174 NM_001080399 ENSG00000253117 OC90 PLA2L otoconin 90 protein-coding 364-442 chr8 79514467 79514758 + 2 NA Intergenic Intergenic -96505 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 335-236 chr2 35217178 35217350 + 2 NA Intergenic Intergenic -254141 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 291-123 chr14 57988937 57989157 + 2 NA Intergenic Intergenic -122955 NM_001352011 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 836-3 chr1 112250309 112251013 + 2 NA Intergenic Intergenic -145553 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 489-25 chr10 41914804 41915135 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 453076 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 116-43 chr6 161515876 161515951 + 2 NA intron (NM_004562, intron 9 of 11) intron (NM_004562, intron 9 of 11) 44936 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 470-31 chr11 4930090 4930413 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -5912 NM_001005237 79324 Hs.554541 NM_001005237 ENSG00000278870 OR51G1 OR11-29|OR51G3P olfactory receptor family 51 subfamily G member 1 (gene/pseudogene) protein-coding 361-379 chr5 152882651 152882892 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 89578 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 292-262 chr21 29353804 29354066 + 2 NA intron (NR_027655, intron 6 of 7) intron (NR_027655, intron 6 of 7) -18566 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 388-345 chr8 78284938 78285262 + 2 NA Intergenic L2a|LINE|L2 -231240 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 242-304 chr5 68814215 68814386 + 2 NA Intergenic L1MC3|LINE|L1 215627 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 119-34 chr2 115442721 115442797 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 98944 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 358-90 chr12 20660154 20660381 + 2 NA intron (NM_000921, intron 15 of 15) THE1C|LTR|ERVL-MaLR -35088 NM_001145946 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 456-317 chr8 88641787 88642213 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -314517 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 335-41 chr10 2400773 2401027 + 2 NA Intergenic Intergenic -85826 NR_038884 399708 Hs.521270 NR_038884 LINC00701 - long intergenic non-protein coding RNA 701 ncRNA 749-62 chr21 29251547 29252275 + 2 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -47011 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 253-142 chr15 69978274 69978454 + 2 NA Intergenic L1ME3G|LINE|L1 101104 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 305-135 chr13 43622830 43622986 + 2 NA intron (NM_001127615, intron 1 of 16) L1PB1|LINE|L1 6569 NM_001127615 55068 Hs.128258 NM_017993 ENSG00000120658 ENOX1 CNOX|PIG38|bA64J21.1|cCNOX ecto-NOX disulfide-thiol exchanger 1 protein-coding 522-72 chr14 26100845 26101194 + 2 NA Intergenic Intergenic 452411 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 498-35 chr10 81378791 81379222 + 2 NA Intergenic Intergenic -496188 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 412-251 chr5 23609549 23609858 + 2 NA Intergenic L1MA2|LINE|L1 102048 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 249-157 chr17 77739910 77740125 + 2 NA Intergenic L1M4|LINE|L1 -11458 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 359-470 chr8 71140701 71140992 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 215860 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 415-181 chr3 86984424 86984692 + 2 NA intron (NM_001320493, intron 1 of 3) MARNA|DNA|TcMar-Mariner 6591 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 419-93 chr14 62312907 62313281 + 2 NA Intergenic L1MA4|LINE|L1 -173121 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 241-131 chr16 22366220 22366383 + 2 NA intron (NM_001802, intron 1 of 4).2 L2a|LINE|L2 8318 NM_001802 1039 Hs.513430 NM_001802 ENSG00000140743 CDR2 CDR62|Yo cerebellar degeneration related protein 2 protein-coding 278-381 chr6 135806986 135807218 + 2 NA Intergenic Intergenic -44599 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 340-178 chr15 90279694 90280013 + 2 NA Intergenic AluSx4|SINE|Alu -14094 NR_102428 10519 Hs.715556 NM_006384 ENSG00000185043 CIB1 CIB|CIBP|KIP1|PRKDCIP|SIP2-28 calcium and integrin binding 1 protein-coding 724-48 chr3 5231243 5231850 + 2 NA Intergenic Intergenic 18709 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 269-214 chr2 175554038 175554206 + 2 NA Intergenic Intergenic -372412 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 296-356 chr5 25206760 25206964 + 2 NA intron (NR_136209, intron 1 of 3) L1MA5A|LINE|L1 15909 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 293-177 chr2 12310385 12310560 + 2 NA intron (NR_110196, intron 4 of 5) MIR3|SINE|MIR 111342 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 340-221 chr19 19729497 19729805 + 2 NA intron (NM_021030, intron 1 of 3) intron (NM_021030, intron 1 of 3) 3461 NM_021030 7561 Hs.659932 NM_021030 ENSG00000105708 ZNF14 GIOT-4|KOX6 zinc finger protein 14 protein-coding 335-330 chr22 49358341 49358517 + 2 NA Intergenic Intergenic 185037 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 324-378 chr4 31857722 31857928 + 2 NA Intergenic L1P4a|LINE|L1 -139554 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 392-174 chr20 39348979 39349297 + 2 NA Intergenic 7SLRNA|srpRNA|srpRNA -124390 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 228-109 chr15 50252337 50252542 + 2 NA exon (NM_002112, exon 9 of 12) exon (NM_002112, exon 9 of 12) 13287 NM_002112 3067 Hs.1481 NM_002112 ENSG00000140287 HDC - histidine decarboxylase protein-coding 331-140 chr13 83295799 83296074 + 2 NA Intergenic L1PA16|LINE|L1 586457 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 486-95 chr15 24572976 24573300 + 2 NA intron (NR_026646, intron 5 of 8) L1M3|LINE|L1 14981 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 378-427 chr8 26532391 26532619 + 2 NA intron (NM_001197293, intron 1 of 13) L1MB7|LINE|L1 18474 NM_001197293 1808 Hs.593187 NM_001386 ENSG00000092964 DPYSL2 CRMP-2|CRMP2|DHPRP2|DRP-2|DRP2|N2A3|ULIP-2|ULIP2 dihydropyrimidinase like 2 protein-coding 553-6 chr1 113516993 113517392 + 2 NA intron (NM_001142782, intron 1 of 20) L1MC3|LINE|L1 126677 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 268-61 chr11 12192790 12193031 + 2 NA intron (NR_144420, intron 3 of 27) MIRb|SINE|MIR 29227 NR_106739 102466906 NR_106739 ENSG00000275373 MIR6124 hsa-mir-6124 microRNA 6124 ncRNA 219-59 chr11 112664714 112664872 + 2 NA Intergenic Intergenic -108991 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 450-169 chr20 42328487 42328838 + 2 NA intron (NM_133170, intron 11 of 31) L1M5|LINE|L1 -356821 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 268-30 chr10 19345496 19345676 + 2 NA intron (NM_001142308, intron 24 of 39) intron (NM_001142308, intron 24 of 39) 296785 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 320-478 chr6 41858986 41859236 + 2 NA intron (NM_001286554, intron 1 of 5) L2c|LINE|L2 12526 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 184-136 chr5 96417070 96417206 + 2 NA intron (NM_001177875, intron 5 of 13) intron (NM_001177875, intron 5 of 13) 15021 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 360-132 chr14 89106296 89106616 + 2 NA Intergenic Intergenic 281805 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 223-58 chr11 116339522 116339696 + 2 NA Intergenic MIRb|SINE|MIR -299813 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 310-522 chr8 99752589 99752869 + 2 NA intron (NM_017890, intron 39 of 61) intron (NM_017890, intron 39 of 61) 140978 NM_004374 1345 Hs.351875 NM_004374 ENSG00000164919 COX6C - cytochrome c oxidase subunit 6C protein-coding 330-435 chr5 120870648 120870922 + 2 NA Intergenic MER20|DNA|hAT-Charlie 339321 NM_001308088 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 424-174 chr3 68948225 68948564 + 2 NA Intergenic Intergenic -15784 NM_001005527 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 308-370 chr5 4075489 4075698 + 2 NA Intergenic L1M3b|LINE|L1 479761 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 577-91 chr2 59833603 59834065 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 549202 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 469-72 chr12 123766042 123766421 + 2 NA intron (NM_207437, intron 1 of 77) (ATCT)n|Simple_repeat|Simple_repeat 3736 NM_207437 196385 Hs.622654 NM_207437 ENSG00000197653 DNAH10 - dynein axonemal heavy chain 10 protein-coding 299-15 chr1 88378036 88378237 + 2 NA Intergenic MIRb|SINE|MIR -306008 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 265-44 chr10 96345516 96345735 + 2 NA non-coding (NR_104296, exon 6 of 6) non-coding (NR_104296, exon 6 of 6) 11534 NM_001284324 93377 Hs.12449 NM_033207 ENSG00000197430 OPALIN HTMP10|TMEM10|TMP10 oligodendrocytic myelin paranodal and inner loop protein protein-coding 309-390 chr4 59876250 59876554 + 2 NA Intergenic L2|LINE|L2 862829 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 457-59 chr13 95672463 95672821 + 2 NA TTS (NR_132117) TTS (NR_132117) 4283 NR_132117 100289274 Hs.594844 NR_132117 ENSG00000247400 DNAJC3-DT DNAJC3-AS1 DNAJC3 divergent transcript ncRNA 444-128 chr2 193613220 193613576 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner -730871 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 964-28 chr6 38138416 38138980 + 2 NA intron (NM_021943, intron 5 of 5) L2a|LINE|L2 318971 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 387-190 chr2 187270931 187271228 + 2 NA Intergenic L1PA17|LINE|L1 177173 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 150-100 chr7 52460556 52460648 + 2 NA Intergenic Intergenic -575031 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 300-78 chr11 122283897 122284130 + 2 NA intron (NR_137180, intron 2 of 4) MIRb|SINE|MIR 25474 NR_137193 399959 Hs.44098 NR_024430 ENSG00000255248 MIR100HG AGD1|linc-NeD125|lncRNA-N2 mir-100-let-7a-2-mir-125b-1 cluster host gene ncRNA 270-43 chr10 84868951 84869205 + 2 NA Intergenic L1PA17|LINE|L1 329827 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 273-312 chr4 30306185 30306399 + 2 NA Intergenic Intergenic -414077 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 356-188 chr17 11228373 11228692 + 2 NA Intergenic AluJb|SINE|Alu -12681 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 440-146 chr21 44386545 44386903 + 2 NA intron (NM_003307, intron 9 of 31) L1MB3|LINE|L1 33123 NR_038257 7226 Hs.369759 NM_003307 ENSG00000142185 TRPM2 EREG1|KNP3|LTRPC2|LTrpC-2|NUDT9H|NUDT9L1|TRPC7 transient receptor potential cation channel subfamily M member 2 protein-coding 244-270 chr4 85954196 85954366 + 2 NA intron (NM_031305, intron 2 of 6) intron (NM_031305, intron 2 of 6) 24265 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 318-88 chr10 128175731 128175972 + 2 NA Intergenic Intergenic -49428 NM_001145966 4288 Hs.80976 NM_002417 ENSG00000148773 MKI67 KIA|MIB-|MIB-1|PPP1R105 marker of proliferation Ki-67 protein-coding 189-69 chr16 86793174 86793311 + 2 NA Intergenic MIR3|SINE|MIR 71151 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 218-309 chr7 110510507 110510655 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -550368 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 427-187 chr4 79332537 79332826 + 2 NA Intergenic AluSz6|SINE|Alu -6620 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 281-163 chr17 55627602 55627830 + 2 NA Intergenic AluJo|SINE|Alu 95148 NM_018286 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 231-346 chr8 53991733 53991954 + 2 NA intron (NM_201437, intron 3 of 8) intron (NM_201437, intron 3 of 8) 30605 NM_006756 6917 Hs.491745 NM_006756 ENSG00000187735 TCEA1 GTF2S|SII|TCEA|TF2S|TFIIS transcription elongation factor A1 protein-coding 360-40 chr10 62473086 62473383 + 2 NA intron (NM_199451, intron 4 of 7) intron (NM_199451, intron 4 of 7) -47214 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 321-124 chr12 18538602 18538808 + 2 NA intron (NM_001288774, intron 25 of 32) intron (NM_001288774, intron 25 of 32) 198804 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 143-7 chr10 55723114 55723201 + 2 NA Intergenic L1MC|LINE|L1 -95215 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 271-265 chr3 67116673 67116814 + 2 NA Intergenic LTR16C|LTR|ERVL -108721 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 263-35 chr10 5333679 5333869 + 2 NA Intergenic Intergenic -31192 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 595-114 chr3 189636909 189637407 + 2 NA intron (NM_003722, intron 1 of 13) MER6|DNA|TcMar-Tigger 5769 NM_003722 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 250-37 chr10 27629944 27630111 + 2 NA Intergenic AluSx1|SINE|Alu -114588 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 226-370 chr9 6042813 6042969 + 2 NA Intergenic L1PB3|LINE|L1 -27267 NM_001243203 26953 Hs.167496 NM_012416 ENSG00000137040 RANBP6 - RAN binding protein 6 protein-coding 325-419 chr5 2927370 2927681 + 2 NA Intergenic L1MEd|LINE|L1 9671 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 481-206 chr3 125501462 125501842 + 2 NA intron (NR_073435, intron 1 of 12) intron (NR_073435, intron 1 of 12) 18550 NR_073435 8723 Hs.507243 NM_003794 ENSG00000114520 SNX4 ATG24B sorting nexin 4 protein-coding 227-65 chr11 70600887 70601046 + 2 NA intron (NM_133266, intron 2 of 10) L1ME3B|LINE|L1 -30128 NR_046567 100874198 Hs.656610 NR_046567 ENSG00000226627 SHANK2-AS1 - SHANK2 antisense RNA 1 ncRNA 322-569 chr9 88326246 88326527 + 2 NA Intergenic L1ME3G|LINE|L1 -62058 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 604-154 chr7 104612238 104612656 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 191645 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 250-385 chr6 157176865 157177035 + 2 NA intron (NM_001363725, intron 9 of 17) intron (NM_001363725, intron 9 of 17) 140523 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 288-56 chr10 83767716 83767932 + 2 NA Intergenic L1MD1|LINE|L1 -90735 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 395-111 chr15 82907773 82908025 + 2 NA intron (NM_004839, intron 1 of 8) L1MB8|LINE|L1 44821 NM_004839 9455 Hs.578443 NM_004839 ENSG00000103942 HOMER2 ACPD|CPD|DFNA68|HOMER-2|VESL-2 homer scaffold protein 2 protein-coding 579-27 chr12 24541980 24542479 + 2 NA intron (NM_152989, intron 1 of 17) L2b|LINE|L2 20262 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 211-299 chr8 77162818 77162958 + 2 NA Intergenic Intergenic -161844 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 309-504 chr7 16501693 16501924 + 2 NA Intergenic LTR1D|LTR|ERV1 -25017 NM_001195280 100506049 Hs.278036 NM_001195280 ENSG00000205858 LRRC72 - leucine rich repeat containing 72 protein-coding 348-70 chr10 123534637 123534854 + 2 NA Intergenic L1PA16|LINE|L1 -131610 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 224-29 chr10 22527252 22527412 + 2 NA Intergenic L1M4|LINE|L1 -89403 NR_036533 100499489 Hs.7444 NR_036533 LOC100499489 - uncharacterized LOC100499489 ncRNA 224-218 chr4 37967751 37967962 + 2 NA intron (NM_001253912, intron 2 of 20) intron (NM_001253912, intron 2 of 20) 7458 NM_006607 10744 Hs.668806 NM_006607 ENSG00000250254 PTTG2 - pituitary tumor-transforming 2 protein-coding 469-44 chr10 116421255 116421665 + 2 NA Intergenic L3|LINE|CR1 -6387 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 563-201 chrX 83230043 83230398 + 2 NA Intergenic L1PA15|LINE|L1 -278070 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 269-201 chr2 107024419 107024598 + 2 NA Intergenic MLT2F|LTR|ERVL -137399 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 184-22 chr10 24590516 24590664 + 2 NA intron (NR_160022, intron 24 of 26) intron (NR_160022, intron 24 of 26) 32253 NM_001367455 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 221-59 chr12 251146 251320 + 2 NA intron (NM_016615, intron 2 of 14) L1ME2z|LINE|L1 6066 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 310-50 chr10 82880279 82880450 + 2 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -647444 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 439-128 chr2 39836251 39836577 + 2 NA Intergenic L1PA15-16|LINE|L1 -57138 NR_135662 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 327-208 chr18 3860793 3860976 + 2 NA intron (NM_001242761, intron 4 of 11) intron (NM_001242761, intron 4 of 11) 13418 NM_001308390 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 432-32 chr10 54239490 54239847 + 2 NA intron (NM_001354411, intron 8 of 34) intron (NM_001354411, intron 8 of 34) -246562 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 397-127 chr18 48199423 48199721 + 2 NA intron (NM_001371285, intron 1 of 5) HAL1|LINE|L1 -5646 NM_001371288 427-91 chr17 9736222 9736593 + 2 NA Intergenic Intergenic 55185 NM_001220493 201140 Hs.61684 NM_001105571 ENSG00000184544 DHRS7C SDR32C2 dehydrogenase/reductase 7C protein-coding 322-275 chr2 151552670 151552911 + 2 NA intron (NM_001271208, intron 127 of 182) intron (NM_001271208, intron 127 of 182) 142888 NM_001177665 55183 Hs.536537 NM_018151 ENSG00000080345 RIF1 - replication timing regulatory factor 1 protein-coding 365-54 chr10 81339481 81339772 + 2 NA Intergenic Intergenic -535568 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 337-394 chr4 53869644 53869956 + 2 NA Intergenic MIRc|SINE|MIR 117482 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 520-310 chr8 131180466 131180805 + 2 NA Intergenic LTR88c|LTR|Gypsy? -139726 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 328-499 chr6 51993310 51993556 + 2 NA intron (NM_138694, intron 35 of 66) intron (NM_138694, intron 35 of 66) 94180 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 297-48 chr10 51303813 51303994 + 2 NA intron (NM_001098512, intron 2 of 17) AluSx1|SINE|Alu 4330 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 519-238 chr8 107074183 107074553 + 2 NA Intergenic MIRb|SINE|MIR 262147 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 289-324 chr3 183351244 183351483 + 2 NA intron (NM_015078, intron 3 of 29) intron (NM_015078, intron 3 of 29) 76906 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 300-275 chr3 80958618 80958830 + 2 NA Intergenic ALR/Alpha|Satellite|centr -35144 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 305-468 chr6 47919118 47919385 + 2 NA intron (NM_207499, intron 2 of 2) L2a|LINE|L2 132183 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 213-154 chr2 190716314 190716473 + 2 NA Intergenic Intergenic 57235 NM_001321315 4664 Hs.107474 NM_005966 ENSG00000138386 NAB1 - NGFI-A binding protein 1 protein-coding 436-72 chr13 26039353 26039737 + 2 NA Intergenic Intergenic 11515 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 159-20 chr12 27822567 27822680 + 2 NA Intergenic Intergenic 42390 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 225-143 chr2 6040788 6040991 + 2 NA Intergenic MIRb|SINE|MIR 58911 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 227-364 chr8 30369819 30369990 + 2 NA Intergenic L1ME3G|LINE|L1 -14597 NM_001008712 11030 Hs.334587 NM_006867 ENSG00000157110 RBPMS HERMES RNA binding protein, mRNA processing factor protein-coding 281-412 chr7 41678119 41678314 + 2 NA Intergenic Intergenic -15703 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 303-316 chr4 72865643 72865905 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 203942 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 296-308 chr3 141144100 141144359 + 2 NA intron (NM_080862, intron 2 of 2) L1ME3|LINE|L1 -87596 NM_001037172 92370 Hs.657887 NM_152282 ENSG00000155893 PXYLP1 ACPL2|HEL124|XYLP 2-phosphoxylose phosphatase 1 protein-coding 159-8 chr1 238472398 238472505 + 2 NA Intergenic MER34C_|LTR|ERV1 13566 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 279-205 chr2 188342706 188342893 + 2 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 45307 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 359-478 chr8 87263839 87264118 + 2 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 397563 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 1257-9 chr7 47768108 47769165 + 2 NA Intergenic L2a|LINE|L2 7160 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 240-315 chr4 54510820 54510989 + 2 NA Intergenic Intergenic 96227 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 583-141 chr5 150958894 150959333 + 2 NA Intergenic AluSq10|SINE|Alu -12529 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 264-178 chr18 64375707 64375891 + 2 NA intron (NR_033881, intron 5 of 9) HAL1M8|LINE|L1 -115744 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 214-129 chr17 59754360 59754510 + 2 NA intron (NM_001329401, intron 4 of 9) intron (NM_001329401, intron 4 of 9) 46781 NM_001329400 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 328-559 chr8 54120465 54120655 + 2 NA Intergenic AluSc|SINE|Alu -14681 NM_014175 29088 Hs.18349 NM_014175 ENSG00000137547 MRPL15 HSPC145|L15mt|MRP-L15|MRP-L7|RPML7 mitochondrial ribosomal protein L15 protein-coding 447-289 chr9 28535033 28535385 + 2 NA intron (NM_152570, intron 2 of 6) L1ME4a|LINE|L1 184096 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 213-122 chr18 40553899 40554080 + 2 NA Intergenic X2_LINE|LINE|CR1 487703 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 266-197 chr2 158839752 158839925 + 2 NA Intergenic Intergenic 44521 NM_001017920 92196 Hs.59761 NM_001017920 ENSG00000163331 DAPL1 - death associated protein like 1 protein-coding 209-239 chr4 159139556 159139716 + 2 NA intron (NM_001351724, intron 1 of 30) intron (NM_001351724, intron 1 of 30) -10742 NR_037459 100500881 NR_037459 ENSG00000264105 MIR3688-1 MIR3688|mir-3688-1 microRNA 3688-1 ncRNA 327-17 chr1 118916635 118916864 + 2 NA intron (NM_152380, intron 5 of 7) AluSx|SINE|Alu 71594 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 278-238 chr2 185108643 185108808 + 2 NA Intergenic L1PA16|LINE|L1 58347 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 199-242 chr8 114904216 114904369 + 2 NA Intergenic LTR16A2|LTR|ERVL 763721 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 334-533 chr8 78767429 78767621 + 2 NA intron (NM_001199886, intron 2 of 4) intron (NM_001199886, intron 2 of 4) 37938 NM_000880 3574 Hs.591873 NM_000880 ENSG00000104432 IL7 IL-7 interleukin 7 protein-coding 203-98 chr18 78224242 78224414 + 2 NA Intergenic Intergenic -230601 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 317-19 chr1 104707339 104707530 + 2 NA Intergenic Intergenic 634411 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 616-176 chr8 137718678 137719149 + 2 NA Intergenic L1PA16|LINE|L1 -305325 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 279-319 chr5 33547444 33547617 + 2 NA intron (NM_001324512, intron 19 of 21) intron (NM_001324512, intron 19 of 21) 106754 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 371-303 chr5 26334771 26334998 + 2 NA Intergenic Intergenic 703702 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 150-8 chr1 190005654 190005764 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 470301 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 388-13 chr1 104904599 104904831 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 714220 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 303-411 chr7 1019029 1019186 + 2 NA intron (NR_146964, intron 1 of 4) AluSx|SINE|Alu 3919 NR_029898 442907 NR_029898 ENSG00000199023 MIR339 MIRN339|hsa-mir-339|mir-339 microRNA 339 ncRNA 454-115 chr16 81399250 81399640 + 2 NA Intergenic Intergenic 14427 NR_039871 100616150 NR_039871 ENSG00000284473 MIR4720 - microRNA 4720 ncRNA 500-143 chr2 116576065 116576432 + 2 NA Intergenic L1MA1|LINE|L1 1232433 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 333-520 chr6 164806865 164807049 + 2 NA intron (NR_131926, intron 1 of 3) THE1D-int|LTR|ERVL-MaLR 15106 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 591-68 chr2 76397932 76398277 + 2 NA Intergenic Intergenic -587861 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 198-161 chr3 60911706 60911880 + 2 NA intron (NR_148922, intron 3 of 3) intron (NR_148922, intron 3 of 3) -293923 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 438-194 chr4 59800637 59800897 + 2 NA Intergenic L1PA12|LINE|L1 787194 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 214-305 chr7 89564691 89564859 + 2 NA Intergenic L1M5|LINE|L1 -554625 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 305-125 chr12 65485987 65486227 + 2 NA intron (NR_120431, intron 3 of 3) L1MEd|LINE|L1 71204 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 259-358 chr6 151553466 151553648 + 2 NA intron (NM_025059, intron 5 of 10) intron (NM_025059, intron 5 of 10) 59540 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 214-168 chr2 129619162 129619323 + 2 NA Intergenic Intergenic 258249 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 337-355 chr3 84536830 84537075 + 2 NA Intergenic Intergenic 332623 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 366-450 chr8 124951828 124952161 + 2 NA TTS (NR_027321) TTS (NR_027321) 9986 NR_027321 157381 Hs.638933 NR_027321 ENSG00000249816 LINC00964 - long intergenic non-protein coding RNA 964 ncRNA 303-244 chr20 12526729 12526931 + 2 NA Intergenic Intergenic 410133 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 429-10 chr1 108480938 108481251 + 2 NA Intergenic AluSz|SINE|Alu 30812 NM_001143987 653149 Hs.712226 NM_001143987 ENSG00000186086 NBPF6 - NBPF member 6 protein-coding 338-402 chr5 2871019 2871213 + 2 NA Intergenic Intergenic -46738 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 261-73 chr11 102417701 102417905 + 2 NA intron (NM_052932, intron 2 of 4) L1PA15|LINE|L1 34962 NM_052932 114908 Hs.503709 NM_052932 ENSG00000152558 TMEM123 KCT3|PORIMIN|PORMIN transmembrane protein 123 protein-coding 215-53 chr11 85704870 85705035 + 2 NA exon (NM_001365833, exon 6 of 10) exon (NM_001365833, exon 6 of 10) 14142 NM_001365830 54843 Hs.369520 NM_032379 ENSG00000137501 SYTL2 CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A synaptotagmin like 2 protein-coding 307-367 chr5 5961182 5961349 + 2 NA Intergenic Intergenic 376027 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 439-260 chr7 14295273 14295583 + 2 NA intron (NM_001350717, intron 22 of 24) intron (NM_001350717, intron 22 of 24) -304003 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 703-91 chr8 25723714 25724341 + 2 NA Intergenic L1PA14|LINE|L1 264794 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 163-76 chr22 31450374 31450494 + 2 NA intron (NM_001164502, intron 8 of 16) intron (NM_001164502, intron 8 of 16) 39122 NM_001164501 56478 Hs.517559 NM_019843 ENSG00000184708 EIF4ENIF1 4E-T|Clast4 eukaryotic translation initiation factor 4E nuclear import factor 1 protein-coding 313-495 chr7 51501145 51501445 + 2 NA Intergenic Intergenic -108039 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 185-213 chr9 117913801 117913903 + 2 NA Intergenic L1MB3|LINE|L1 209449 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 474-221 chr4 162413600 162413902 + 2 NA Intergenic L2c|LINE|L2 -249717 NM_001128428 56884 Hs.32452 NM_020116 ENSG00000168843 FSTL5 - follistatin like 5 protein-coding 308-403 chr5 156440809 156441010 + 2 NA intron (NM_001128209, intron 2 of 7) L1MB5|LINE|L1 113745 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 645-64 chr2 181762518 181762983 + 2 NA Intergenic Intergenic -82085 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 322-148 chr14 32191607 32191882 + 2 NA Intergenic Intergenic -10301 NR_004394 26827 NR_004394 ENSG00000206625 RNU6-1 RNU6|RNU6A|U6|U6-1 RNA, U6 small nuclear 1 snRNA 234-100 chr14 67105386 67105549 + 2 NA intron (NM_001024218, intron 12 of 21) L1M2a|LINE|L1 -83973 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 335-78 chr10 129994259 129994466 + 2 NA Intergenic L1MA3|LINE|L1 -30088 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 269-163 chr18 42761297 42761542 + 2 NA intron (NM_002930, intron 4 of 4) intron (NM_002930, intron 4 of 4) 354266 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 615-20 chr11 71175953 71176351 + 2 NA intron (NM_012309, intron 1 of 24) L1MEc|LINE|L1 48644 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 354-156 chr15 71353881 71354131 + 2 NA intron (NM_024817, intron 5 of 16) L2c|LINE|L2 -164947 NR_120349 101929196 Hs.680472 NR_120348 THSD4-AS1 - THSD4 antisense RNA 1 ncRNA 355-293 chr21 27519017 27519219 + 2 NA Intergenic Intergenic -203261 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 478-25 chr10 66843614 66843994 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -82232 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 315-249 chr2 106320079 106320316 + 2 NA Intergenic AluSx4|SINE|Alu -49548 NR_157576 402096 NR_157576 LOC402096 - anaphase promoting complex subunit 1 pseudogene pseudo 352-317 chr3 60508714 60509034 + 2 NA intron (NM_001320900, intron 6 of 9) intron (NM_001320900, intron 6 of 9) 108996 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 197-66 chr15 68968399 68968568 + 2 NA intron (NM_001184780, intron 1 of 15) L1M4|LINE|L1 37958 NM_145658 246777 Hs.657932 NM_145658 ENSG00000258484 SPESP1 ESP|SP-ESP sperm equatorial segment protein 1 protein-coding 304-532 chr8 117655940 117656099 + 2 NA Intergenic Intergenic 135306 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 337-169 chr15 45836804 45836972 + 2 NA intron (NR_135680, intron 1 of 4) AluY|SINE|Alu 131693 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 214-71 chr11 109454042 109454166 + 2 NA Intergenic Intergenic 31914 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 280-43 chr10 13998702 13998860 + 2 NA intron (NM_018027, intron 2 of 24) L2a|LINE|L2 9769 NM_001318336 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 559-25 chr11 91481080 91481450 + 2 NA Intergenic L1ME3A|LINE|L1 -612063 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 190-3 chr1 94812477 94812580 + 2 NA intron (NR_160783, intron 1 of 3) intron (NR_160783, intron 1 of 3) 7704 NR_160784 101928079 Hs.596857 NR_104131 ENSG00000224081 SLC44A3-AS1 LINC01057|XLOC_000303 SLC44A3 antisense RNA 1 ncRNA 182-27 chr11 47422716 47422831 + 2 NA intron (NM_002804, intron 7 of 11) intron (NM_002804, intron 7 of 11) 3700 NM_002804 5702 Hs.250758 NM_002804 ENSG00000165916 PSMC3 TBP1 proteasome 26S subunit, ATPase 3 protein-coding 344-175 chr16 60141547 60141734 + 2 NA Intergenic Intergenic 218153 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 548-240 chr8 125969253 125969786 + 2 NA Intergenic Intergenic -18322 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 502-45 chr11 20827555 20827986 + 2 NA intron (NM_001288714, intron 3 of 18) MLT1J1|LTR|ERVL-MaLR 158184 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 278-442 chr8 138195547 138195800 + 2 NA intron (NM_015912, intron 8 of 19) (AC)n|Simple_repeat|Simple_repeat -112128 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 507-122 chr2 70757877 70758257 + 2 NA intron (NM_017482, intron 1 of 12) intron (NM_017482, intron 1 of 12) 9648 NM_001185054 119 Hs.66187 NM_001617 ENSG00000075340 ADD2 ADDB adducin 2 protein-coding 502-220 chr5 38019977 38020435 + 2 NA Intergenic Intergenic -5491 NR_147009 105374731 Hs.570981 NR_147009 ENSG00000248461 LINC02107 - long intergenic non-protein coding RNA 2107 ncRNA 382-374 chr7 13902635 13902884 + 2 NA intron (NM_001370555, intron 11 of 12) intron (NM_001370555, intron 11 of 12) 83755 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 510-211 chr4 110918053 110918500 + 2 NA Intergenic Intergenic -57629 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 304-457 chr6 40319279 40319471 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 36631 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 354-19 chr1 152514762 152514973 + 2 NA intron (NM_019060, intron 1 of 1) intron (NM_019060, intron 1 of 1) 385 NM_019060 54544 Hs.110196 NM_019060 ENSG00000169509 CRCT1 C1orf42|NICE-1|NICE1 cysteine rich C-terminal 1 protein-coding 298-6 chr1 80432027 80432192 + 2 NA Intergenic L1M1|LINE|L1 -103646 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 291-24 chr1 167132569 167132833 + 2 NA Intergenic LTR33|LTR|ERVL 38626 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27, atypical protein-coding 392-259 chr5 125483882 125484180 + 2 NA Intergenic Intergenic -9230 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 300-223 chr2 216386059 216386259 + 2 NA Intergenic MER124|DNA?|DNA? -13676 NM_020814 57574 Hs.170388 NM_020814 ENSG00000144583 MARCH4 MARCH-IV|RNF174 membrane associated ring-CH-type finger 4 protein-coding 257-409 chr8 82778423 82778574 + 2 NA Intergenic Intergenic -133606 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 364-357 chr5 115114521 115114803 + 2 NA Intergenic L1PA16|LINE|L1 55246 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 308-410 chr6 9830129 9830331 + 2 NA Intergenic Intergenic -574272 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 299-450 chr8 86263529 86263774 + 2 NA Intergenic MER21C|LTR|ERVL -33270 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 322-509 chr8 14360491 14360659 + 2 NA intron (NM_001322881, intron 2 of 6) AluSx|SINE|Alu 492935 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 472-167 chr2 123673154 123673549 + 2 NA Intergenic Intergenic 351823 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 340-518 chr7 136503454 136503771 + 2 NA Intergenic L1MC5|LINE|L1 -365040 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 333-323 chr21 28770016 28770201 + 2 NA Intergenic Intergenic 115259 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 316-256 chr2 29608387 29608582 + 2 NA intron (NM_004304, intron 3 of 28) MIR3|SINE|MIR -133107 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 225-343 chr8 35265177 35265397 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 29812 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 480-76 chr14 57012653 57012948 + 2 NA Intergenic L1ME1|LINE|L1 199642 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 344-70 chr10 131390383 131390590 + 2 NA Intergenic L1PB4|LINE|L1 -78765 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 361-120 chr12 118921469 118921793 + 2 NA Intergenic Intergenic -59910 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 487-128 chr2 524877 525299 + 2 NA Intergenic Intergenic -20717 NR_146470 101927362 Hs.385749 NR_146470 ENSG00000225942 LINC01875 - long intergenic non-protein coding RNA 1875 ncRNA 248-24 chr1 222830008 222830188 + 2 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 15059 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 245-267 chr4 162762136 162762314 + 2 NA Intergenic Intergenic 331403 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 482-118 chr2 15651967 15652375 + 2 NA Intergenic Intergenic -38611 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 479-182 chr5 12446032 12446407 + 2 NA Intergenic L1MDa|LINE|L1 -128638 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 347-506 chr8 77793070 77793341 + 2 NA Intergenic HAL1|LINE|L1 342508 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 692-72 chr4 85648326 85648953 + 2 NA intron (NM_001025616, intron 2 of 9) intron (NM_001025616, intron 2 of 9) -73829 NR_039656 100616349 NR_039656 ENSG00000266421 MIR4451 mir-4451 microRNA 4451 ncRNA 311-488 chr8 25631442 25631683 + 2 NA Intergenic Intergenic 172329 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 343-551 chr8 115188804 115189094 + 2 NA Intergenic L3b|LINE|CR1 479064 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 321-411 chr4 41036985 41037189 + 2 NA intron (NM_001330658, intron 3 of 15) MER3|DNA|hAT-Charlie 177455 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 267-59 chr10 115844532 115844756 + 2 NA intron (NM_207303, intron 27 of 28) intron (NM_207303, intron 27 of 28) 350145 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 805-39 chr5 155113979 155114656 + 2 NA Intergenic Intergenic 100562 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 297-79 chr11 79006793 79006947 + 2 NA intron (NM_001098816, intron 6 of 33) MLT2D|LTR|ERVL 395239 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 329-595 chr8 133614881 133615107 + 2 NA Intergenic MIR|SINE|MIR -43107 NM_003033 6482 Hs.374257 NM_003033 ENSG00000008513 ST3GAL1 Gal-NAc6S|SIAT4A|SIATFL|ST3GalA|ST3GalA.1|ST3GalIA|ST3GalIA,1|ST3O ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 238-425 chrX 45495454 45495650 + 2 NA Intergenic L1MA2|LINE|L1 -9836 NR_104644 101927528 Hs.550772 NR_104644 ENSG00000229563 LINC01204 - long intergenic non-protein coding RNA 1204 ncRNA 267-53 chr10 71416367 71416588 + 2 NA intron (NM_052836, intron 1 of 12) L1MEg|LINE|L1 19543 NM_001171932 64072 Hs.656032 NM_022124 ENSG00000107736 CDH23 CDHR23|PITA5|USH1D cadherin related 23 protein-coding 262-450 chr9 35317177 35317341 + 2 NA intron (NM_006377, intron 10 of 38) AluJo|SINE|Alu -24637 NM_001371188 349-169 chr14 83268676 83268903 + 2 NA Intergenic Intergenic 626157 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 412-164 chr2 113404453 113404831 + 2 NA Intergenic Intergenic -33049 NR_138474 150472 Hs.531330 NM_172003 ENSG00000136682 CBWD2 - COBW domain containing 2 protein-coding 256-320 chr5 61199887 61200070 + 2 NA intron (NR_109908, intron 3 of 3) L1PA10|LINE|L1 -37510 NM_001048249 643155 Hs.508479 NM_001048249 ENSG00000188725 SMIM15 C5orf43 small integral membrane protein 15 protein-coding 348-543 chr8 140022211 140022463 + 2 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 78198 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 584-24 chr10 108047284 108047821 + 2 NA intron (NR_125760, intron 1 of 4) AluY|SINE|Alu 21741 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 314-378 chr3 87044076 87044299 + 2 NA Intergenic Intergenic -45093 NR_047469 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 469-286 chr8 112046883 112047209 + 2 NA Intergenic Intergenic -596447 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 328-235 chr19 37878817 37879007 + 2 NA Intergenic L2-3_Crp|LINE|L2 -23716 NR_040015 100631378 Hs.726940 NR_040015 ENSG00000225868 LOC100631378 - uncharacterized 100631378 ncRNA 359-131 chr13 67659990 67660345 + 2 NA Intergenic Intergenic 287780 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 698-24 chr15 60747952 60748594 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 66704 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 245-25 chr1 219180358 219180580 + 2 NA intron (NM_001350629, intron 3 of 5) intron (NM_001350629, intron 3 of 5) 5500 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 466-13 chr1 117803421 117803776 + 2 NA Intergenic Intergenic 126023 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 356-47 chr10 43002865 43003139 + 2 NA Intergenic Intergenic 5439 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 323-508 chr7 91787722 91787971 + 2 NA Intergenic L2b|LINE|L2 92856 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 434-201 chr4 2443972 2444335 + 2 NA intron (NM_001193282, intron 5 of 15) intron (NM_001193282, intron 5 of 15) -24953 NM_002938 6047 Hs.66394 NM_002938 ENSG00000063978 RNF4 RES4-26|SLX5|SNURF ring finger protein 4 protein-coding 362-324 chr4 159518587 159518857 + 2 NA Intergenic L2b|LINE|L2 250913 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 677-62 chr4 88276944 88277467 + 2 NA exon (NM_152542, exon 3 of 7) exon (NM_152542, exon 3 of 7) 7356 NM_152542 152926 Hs.43744 NM_152542 ENSG00000163644 PPM1K BDP|MSUDMV|PP2Ckappa|PP2Cm|PTMP|UG0882E07 protein phosphatase, Mg2+/Mn2+ dependent 1K protein-coding 592-161 chr7 45477444 45477950 + 2 NA Intergenic L1MC3|LINE|L1 -96443 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 432-54 chr11 123900632 123900988 + 2 NA Intergenic Intergenic -5622 NM_001005197 338662 Hs.449688 NM_001005197 ENSG00000181518 OR8D4 OR11-275 olfactory receptor family 8 subfamily D member 4 protein-coding 264-9 chr1 95749262 95749433 + 2 NA Intergenic Intergenic 239231 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 308-394 chr5 109617086 109617318 + 2 NA Intergenic L2a|LINE|L2 -72164 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 382-413 chr8 106620559 106620828 + 2 NA intron (NM_018002, intron 3 of 15) MIRc|SINE|MIR -37115 NM_181354 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 525-223 chr6 68455362 68455834 + 2 NA Intergenic L1PA7|LINE|L1 -125699 NR_125854 101928280 Hs.544560 NR_125854 ENSG00000226497 LINC02549 - long intergenic non-protein coding RNA 2549 ncRNA 180-48 chr14 78235502 78235614 + 2 NA intron (NR_073547, intron 1 of 20) L3|LINE|CR1 65185 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 383-169 chr18 72204230 72204459 + 2 NA Intergenic Intergenic 339998 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 369-132 chr15 52850850 52851074 + 2 NA Intergenic Intergenic -60626 NM_004498 3175 Hs.555318 NM_004498 ENSG00000169856 ONECUT1 HNF-6|HNF6|HNF6A one cut homeobox 1 protein-coding 216-119 chr15 100379407 100379557 + 2 NA intron (NR_120374, intron 1 of 4) L1ME3B|LINE|L1 6543 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 228-293 chr6 71987881 71988098 + 2 NA intron (NM_001350411, intron 2 of 3) intron (NM_001350411, intron 2 of 3) 101286 NM_001350412 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 326-306 chr21 19068242 19068512 + 2 NA Intergenic Intergenic -308565 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 300-404 chr6 134555372 134555649 + 2 NA Intergenic L1MCa|LINE|L1 -15505 NR_125855 101928304 Hs.555076 NR_125855 LOC101928304 - uncharacterized LOC101928304 ncRNA 294-144 chr15 84792773 84793041 + 2 NA intron (NM_014630, intron 5 of 10) intron (NM_014630, intron 5 of 10) -23773 NM_020778 57538 Hs.459183 NM_020778 ENSG00000136383 ALPK3 CMH27|MAK|MIDORI alpha kinase 3 protein-coding 552-115 chr2 188229714 188230139 + 2 NA intron (NR_126396, intron 1 of 2) intron (NR_126396, intron 1 of 2) 57765 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 296-169 chr16 31680036 31680246 + 2 NA Intergenic Intergenic -20472 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 328-90 chr11 82234061 82234237 + 2 NA intron (NR_120571, intron 3 of 7) L2c|LINE|L2 169764 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 331-377 chr4 44974079 44974289 + 2 NA Intergenic Intergenic -247550 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 202-44 chr11 97814119 97814246 + 2 NA Intergenic Intergenic -1206767 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 919-2 chr10 9711222 9711780 + 2 NA Intergenic Intergenic -347221 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 130-60 chr3 180624298 180624414 + 2 NA intron (NM_181426, intron 14 of 19) L1M2|LINE|L1 22193 NM_001042601 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 218-361 chrX 43210047 43210200 + 2 NA intron (NR_110387, intron 4 of 5) intron (NR_110387, intron 4 of 5) 33129 NR_110387 101927501 Hs.495998 NR_110387 ENSG00000224294 PINCR - p53-induced noncoding RNA ncRNA 366-19 chr1 110867302 110867588 + 2 NA Intergenic L1PA15|LINE|L1 -3754 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 384-372 chr8 86972255 86972542 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 105983 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 287-187 chr2 28432234 28432416 + 2 NA Intergenic Intergenic -37653 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 272-377 chr6 39397237 39397479 + 2 NA intron (NM_001289024, intron 2 of 9) intron (NM_001289024, intron 2 of 9) 34032 NM_001351566 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 376-379 chr7 67677802 67678132 + 2 NA Intergenic AluJr4|SINE|Alu 341991 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 251-362 chr7 25639568 25639790 + 2 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 23461 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 234-284 chr4 115483083 115483254 + 2 NA Intergenic Intergenic -369548 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 157-121 chr7 53096585 53096675 + 2 NA Intergenic Intergenic 60997 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 477-24 chr1 187169187 187169556 + 2 NA intron (NR_126347, intron 1 of 3) intron (NR_126347, intron 1 of 3) 76529 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 529-150 chr3 190242306 190242790 + 2 NA Intergenic L1PB1|LINE|L1 79898 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 314-26 chr1 118360209 118360391 + 2 NA Intergenic L1ME2|LINE|L1 -175072 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 289-255 chr2 211584793 211584958 + 2 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 841485 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 566-179 chr7 41455636 41456036 + 2 NA Intergenic L1MEi|LINE|L1 -238083 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 217-228 chr3 88786495 88786654 + 2 NA Intergenic L1M3|LINE|L1 -321047 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 439-105 chr17 26872624 26873045 + 2 NA Intergenic (GAATG)n|Satellite|Satellite 216407 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 343-525 chr8 14466288 14466553 + 2 NA intron (NM_001322881, intron 2 of 6) L1M4c|LINE|L1 387090 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 374-145 chr17 57799233 57799553 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 50651 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 510-137 chr2 45201601 45201908 + 2 NA intron (NR_033831, intron 1 of 5) L1M2|LINE|L1 53187 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 215-126 chr18 69029897 69030084 + 2 NA intron (NM_001093729, intron 9 of 9) intron (NM_001093729, intron 9 of 9) 231910 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 242-69 chr12 18126847 18127053 + 2 NA Intergenic Intergenic -36757 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 200-9 chr1 116748705 116748879 + 2 NA Intergenic Intergenic -5638 NM_001328609 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 693-56 chr2 76054194 76054714 + 2 NA Intergenic Intergenic -343539 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 333-162 chr15 45933944 45934118 + 2 NA Intergenic L1MEc|LINE|L1 228836 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 266-328 chr5 46356125 46356311 + 2 NA Intergenic ALR/Alpha|Satellite|centr -659838 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 310-485 chr7 80889263 80889434 + 2 NA intron (NM_006379, intron 2 of 17) MIRc|SINE|MIR 29703 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 213-2 chr1 34488857 34489004 + 2 NA Intergenic L1PA11|LINE|L1 180764 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 319-428 chr5 138606364 138606524 + 2 NA Intergenic Intergenic -31043 NM_004134 3313 Hs.184233 NM_004134 ENSG00000113013 HSPA9 CRP40|CSA|EVPLS|GRP-75|GRP75|HEL-S-124m|HSPA9B|MOT|MOT2|MTHSP75|PBP74|SAAN|SIDBA4 heat shock protein family A (Hsp70) member 9 protein-coding 333-522 chr7 3365041 3365232 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 63884 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 855-41 chr5 162831275 162831780 + 2 NA Intergenic Intergenic -606044 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 392-267 chr5 166768804 166769145 + 2 NA Intergenic Intergenic 157396 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 334-272 chr2 88397323 88397571 + 2 NA Intergenic FLAM_C|SINE|Alu 55246 NM_001135649 344167 Hs.131262 NM_001135649 ENSG00000214336 FOXI3 - forkhead box I3 protein-coding 174-15 chr10 56517389 56517495 + 2 NA Intergenic Intergenic -156169 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 193-124 chr2 198706636 198706795 + 2 NA Intergenic Intergenic -331618 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 282-330 chr4 34095998 34096210 + 2 NA Intergenic L1M3|LINE|L1 -56211 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 388-154 chr2 31634877 31635212 + 2 NA Intergenic L1MA4|LINE|L1 -54106 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 258-381 chr8 33823392 33823603 + 2 NA Intergenic L1M5|LINE|L1 -223391 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 276-177 chr16 12514201 12514390 + 2 NA intron (NM_032167, intron 19 of 20) intron (NM_032167, intron 19 of 20) -206026 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 194-173 chr5 145077906 145078090 + 2 NA Intergenic Intergenic 757344 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 323-243 chr2 52488632 52488854 + 2 NA Intergenic L1PA10|LINE|L1 118095 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 383-402 chr8 137658938 137659272 + 2 NA Intergenic L2b|LINE|L2 -245517 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 471-162 chr3 3401738 3402029 + 2 NA Intergenic L1M1|LINE|L1 -222166 NM_016302 51185 Hs.18925 NM_016302 ENSG00000113851 CRBN MRT2|MRT2A cereblon protein-coding 197-159 chr4 148919534 148919673 + 2 NA Intergenic Intergenic 22775 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 354-396 chr6 47739422 47739676 + 2 NA Intergenic L2|LINE|L2 40969 NM_001347855 221393 Hs.150131 NM_153838 ENSG00000153294 ADGRF4 GPR115|PGR18 adhesion G protein-coupled receptor F4 protein-coding 279-349 chr5 162782908 162783127 + 2 NA Intergenic Intergenic -654554 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 342-28 chr1 116506677 116506920 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -27972 NR_125973 101929023 Hs.668091 NR_125972 ENSG00000233154 LINC01762 - long intergenic non-protein coding RNA 1762 ncRNA 325-428 chr5 15070304 15070555 + 2 NA Intergenic L2a|LINE|L2 196131 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 260-380 chr6 75312925 75313115 + 2 NA exon (NM_001289987, exon 6 of 7) exon (NM_001289987, exon 6 of 7) 28006 NR_040081 100506804 Hs.743708 NR_040081 LOC100506804 - uncharacterized LOC100506804 ncRNA 235-123 chr16 49561377 49561555 + 2 NA intron (NM_001271620, intron 5 of 7) intron (NM_001271620, intron 5 of 7) -42881 NR_144553 1596 Hs.684517 NR_144553 ENSG00000260089 ADAM3B CYRN2 ADAM metallopeptidase domain 3B (pseudogene) pseudo 393-276 chr5 54353999 54354252 + 2 NA intron (NR_126379, intron 1 of 4) THE1B-int|LTR|ERVL-MaLR 33181 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 283-467 chr9 96765787 96765960 + 2 NA intron (NM_001314060, intron 2 of 4) Tigger17a|DNA|TcMar-Tigger 12214 NM_001314059 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 343-596 chrX 155311971 155312150 + 2 NA intron (NM_001289, intron 1 of 5) L1M1|LINE|L1 22554 NM_001289 1193 Hs.655445 NM_001289 ENSG00000155962 CLIC2 CLIC2b|MRXS32|XAP121 chloride intracellular channel 2 protein-coding 313-59 chr10 107660093 107660284 + 2 NA Intergenic Intergenic 409105 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 298-16 chr1 159643604 159643797 + 2 NA Intergenic L1ME3E|LINE|L1 55874 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 407-203 chr3 100154968 100155318 + 2 NA intron (NM_001167924, intron 2 of 9) HAL1|LINE|L1 -30681 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 325-134 chr12 87206260 87206488 + 2 NA Intergenic L1MA3|LINE|L1 -124365 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 246-12 chr1 114868572 114868784 + 2 NA intron (NM_001282542, intron 8 of 30) L1MC1|LINE|L1 13815 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 375-440 chr9 28125263 28125596 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -551563 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 260-315 chr4 84033791 84034041 + 2 NA intron (NR_125909, intron 7 of 8) intron (NR_125909, intron 7 of 8) 265253 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 333-614 chr9 127010332 127010564 + 2 NA intron (NM_001190729, intron 4 of 17) intron (NM_001190729, intron 4 of 17) 48223 NM_001366401 9649 Hs.432842 NM_014636 ENSG00000136828 RALGPS1 RALGEF2|RALGPS1A Ral GEF with PH domain and SH3 binding motif 1 protein-coding 307-343 chr4 83818616 83818820 + 2 NA Intergenic L1MA9|LINE|L1 282610 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 298-511 chrX 62705576 62705828 + 2 NA Intergenic ALR/Alpha|Satellite|centr 645630 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 343-512 chr7 79733571 79733774 + 2 NA Intergenic L1M1|LINE|L1 279712 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 394-202 chr20 48596868 48597121 + 2 NA Intergenic Intergenic 231005 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 415-253 chr7 37713241 37713616 + 2 NA intron (NM_001329994, intron 3 of 3) FLAM_C|SINE|Alu 29662 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 228-241 chr4 56083315 56083514 + 2 NA Intergenic Intergenic -86781 NM_020722 57482 Hs.596667 NM_020722 ENSG00000109265 KIAA1211 CRAD KIAA1211 protein-coding 397-177 chr2 196377178 196377516 + 2 NA intron (NM_020760, intron 2 of 28) THE1B|LTR|ERVL-MaLR -15170 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 343-433 chr5 73186342 73186650 + 2 NA Intergenic Intergenic 13303 NM_153217 134288 Hs.508588 NM_153217 ENSG00000164325 TMEM174 - transmembrane protein 174 protein-coding 173-62 chr2 6207746 6207898 + 2 NA Intergenic Intergenic 167600 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 434-282 chr8 71462202 71462468 + 2 NA intron (NM_001370336, intron 2 of 17) MER52D|LTR|ERV1 85369 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 329-492 chr6 61689097 61689398 + 2 NA intron (NR_146874, intron 8 of 13) MER77B|LTR|ERVL 115117 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 296-225 chr2 71992541 71992734 + 2 NA Intergenic MIR|SINE|MIR 155225 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 567-186 chr8 91007445 91007801 + 2 NA intron (NM_018710, intron 5 of 6) intron (NM_018710, intron 5 of 6) -22385 NM_001190972 100127983 Hs.733266 NM_001190972 ENSG00000253250 C8orf88 - chromosome 8 open reading frame 88 protein-coding 329-318 chr2 239885367 239885668 + 2 NA Intergenic L1MB7|LINE|L1 57577 NR_039949 100616417 NR_039949 ENSG00000264279 MIR4786 mir-4786 microRNA 4786 ncRNA 564-48 chr13 88909239 88909707 + 2 NA Intergenic Intergenic 282620 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 496-147 chr2 162647611 162648002 + 2 NA intron (NM_033272, intron 2 of 15) THE1B|LTR|ERVL-MaLR -121130 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 278-184 chr19 9519749 9519972 + 2 NA Intergenic AluSx4|SINE|Alu 18785 NM_001300883 79088 Hs.386476 NM_024106 ENSG00000130818 ZNF426 K-RBP zinc finger protein 426 protein-coding 346-404 chr5 131016879 131017084 + 2 NA Intergenic L1PB1|LINE|L1 148275 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 246-4 chr1 57878708 57878890 + 2 NA intron (NM_001353980, intron 3 of 5) L1MA5|LINE|L1 18218 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 145-6 chr1 220571617 220571755 + 2 NA intron (NM_018650, intron 1 of 17) intron (NM_018650, intron 1 of 17) 43503 NM_001286126 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 566-170 chr6 140851804 140852279 + 2 NA Intergenic Intergenic 168227 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 229-421 chrX 15120736 15120874 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 149278 NM_001031739 140462 Hs.19404 NM_024087 ENSG00000102048 ASB9 - ankyrin repeat and SOCS box containing 9 protein-coding 280-197 chr2 77582952 77583112 + 2 NA Intergenic L1MA9|LINE|L1 -60599 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 418-284 chr8 82674039 82674411 + 2 NA Intergenic L1PA13|LINE|L1 -237879 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 345-328 chr21 31272910 31273163 + 2 NA intron (NM_001353688, intron 4 of 29) L1MEf|LINE|L1 71318 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 370-411 chr7 17089587 17089893 + 2 NA Intergenic Intergenic -207757 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 701-37 chr18 14099889 14100463 + 2 NA 3' UTR (NM_145287, exon 3 of 3) 3' UTR (NM_145287, exon 3 of 3) 32259 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 247-38 chr10 37850653 37850837 + 2 NA intron (NR_147991, intron 1 of 4) L1MD2|LINE|L1 6865 NR_147997 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 257-438 chr9 76934798 76934984 + 2 NA Intergenic LTR37-int|LTR|ERV1 -28777 NM_015225 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 160-104 chr7 9675595 9675694 + 2 NA Intergenic Intergenic 41374 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 447-209 chr5 31902773 31903132 + 2 NA intron (NM_178140, intron 2 of 24) L1MC|LINE|L1 33207 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 331-441 chr5 156303730 156303912 + 2 NA Intergenic L1MA3|LINE|L1 -22936 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 572-40 chr12 40891450 40891915 + 2 NA intron (NM_001256064, intron 1 of 15) L1MC1|LINE|L1 -16675 NM_175038 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 504-116 chr19 56546609 56547051 + 2 NA intron (NM_001308440, intron 2 of 6) intron (NM_001308440, intron 2 of 6) 7882 NM_020828 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 470-67 chr14 30788972 30789236 + 2 NA Intergenic L1M5|LINE|L1 -85431 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 185-215 chrX 22094213 22094354 + 2 NA intron (NM_001282754, intron 7 of 20) intron (NM_001282754, intron 7 of 20) 61958 NM_000444 5251 Hs.495834 NM_000444 ENSG00000102174 PHEX HPDR|HPDR1|HYP|HYP1|LXHR|PEX|XLH phosphate regulating endopeptidase homolog X-linked protein-coding 356-390 chr5 35553243 35553462 + 2 NA Intergenic Intergenic -64511 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 137-18 chr12 42337002 42337095 + 2 NA intron (NM_001364830, intron 2 of 6) intron (NM_001364830, intron 2 of 6) 5250 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 256-415 chr8 77478479 77478672 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger 27878 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 343-155 chr15 27627649 27627965 + 2 NA Intergenic L1MEg|LINE|L1 -466488 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 333-8 chr1 40154100 40154382 + 2 NA Intergenic ERV24_Prim-int|LTR|ERV1 -7146 NM_012421 6018 Hs.205627 NM_012421 ENSG00000117000 RLF ZN-15L|ZNF292L rearranged L-myc fusion protein-coding 358-148 chr16 64663068 64663288 + 2 NA Intergenic Intergenic 458885 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 236-271 chr5 3359693 3359841 + 2 NA Intergenic Intergenic -93049 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 417-291 chr8 135047666 135048042 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -186277 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 528-35 chr10 61755809 61756183 + 2 NA intron (NM_173554, intron 4 of 6) intron (NM_173554, intron 4 of 6) 93035 NM_173554 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 292-288 chr3 86886953 86887191 + 2 NA Intergenic Intergenic 104077 NM_016206 389136 Hs.606507 NM_016206 ENSG00000206538 VGLL3 VGL-3|VGL3 vestigial like family member 3 protein-coding 292-307 chr4 29843151 29843313 + 2 NA Intergenic L1MEg|LINE|L1 628940 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 349-428 chr5 123787482 123787664 + 2 NA Intergenic Intergenic 242156 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 236-155 chr19 14067166 14067397 + 2 NA Intergenic L1MCa|LINE|L1 -5205 NM_001145028 342979 Hs.444298 NM_001145028 ENSG00000187867 PALM3 - paralemmin 3 protein-coding 219-194 chr2 231277347 231277558 + 2 NA intron (NM_001352757, intron 14 of 19) intron (NM_001352757, intron 14 of 19) 78821 NM_001271466 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 374-41 chr10 107173800 107174134 + 2 NA Intergenic L1ME3|LINE|L1 -9261 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 328-202 chr17 5784438 5784675 + 2 NA intron (NR_040000, intron 1 of 3) intron (NR_040000, intron 1 of 3) 12322 NR_040000 339166 Hs.736088 NR_040000 ENSG00000284837 LOC339166 - uncharacterized LOC339166 ncRNA 129-7 chr11 60475983 60476054 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -16760 NM_017716 54860 Hs.272789 NM_017716 ENSG00000071203 MS4A12 Ms4a10 membrane spanning 4-domains A12 protein-coding 572-60 chr15 65695723 65696288 + 2 NA TTS (NR_145750) TTS (NR_145750) 931 NR_145750 109617020 NR_145750 ENSG00000238311 SNORD13E - small nucleolar RNA, C/D box 13E snoRNA 240-68 chr10 120480003 120480183 + 2 NA intron (NR_134516, intron 2 of 4) intron (NR_134516, intron 2 of 4) 23139 NM_001318169 196051 Hs.40479 NM_001030059 ENSG00000203805 PLPP4 DPPL2|PPAPDC1|PPAPDC1A phospholipid phosphatase 4 protein-coding 747-63 chr7 53412318 53413023 + 2 NA Intergenic L1MA5|LINE|L1 377037 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 291-291 chr3 80656749 80656954 + 2 NA Intergenic Intergenic -108046 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 332-166 chr15 67610524 67610813 + 2 NA intron (NM_001206804, intron 8 of 21) intron (NM_001206804, intron 8 of 21) 61574 NM_001206804 5607 Hs.114198 NM_002757 ENSG00000137764 MAP2K5 HsT17454|MAPKK5|MEK5|PRKMK5 mitogen-activated protein kinase kinase 5 protein-coding 372-292 chr21 21399365 21399686 + 2 NA intron (NM_001352592, intron 10 of 18) intron (NM_001352592, intron 10 of 18) 252363 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 352-440 chr5 164767601 164767802 + 2 NA Intergenic Intergenic 297422 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 516-194 chr4 73008548 73008850 + 2 NA Intergenic Intergenic 61017 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 182-59 chr14 86184626 86184759 + 2 NA Intergenic Intergenic 250014 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 275-258 chr4 11755360 11755568 + 2 NA intron (NR_146995, intron 1 of 3) intron (NR_146995, intron 1 of 3) 14004 NR_146995 105374484 Hs.581972 NR_146995 ENSG00000248300 LINC02360 - long intergenic non-protein coding RNA 2360 ncRNA 354-380 chr5 113980642 113980886 + 2 NA Intergenic Intergenic -381306 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 360-502 chrX 76335959 76336177 + 2 NA Intergenic L1MA2|LINE|L1 -91642 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 635-56 chr2 143791751 143792351 + 2 NA Intergenic Intergenic -145016 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 120-45 chr6 160653420 160653532 + 2 NA intron (NM_005577, intron 1 of 38) L1MCc|LINE|L1 10783 NM_005577 4018 Hs.520120 NM_005577 ENSG00000198670 LPA AK38|APOA|LP lipoprotein(a) protein-coding 317-512 chr8 135854071 135854354 + 2 NA Intergenic Intergenic 396756 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 476-48 chr11 41385526 41385915 + 2 NA intron (NM_001258419, intron 1 of 6) L1MEd|LINE|L1 73916 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 306-369 chr4 154053922 154054108 + 2 NA Intergenic L1MA5A|LINE|L1 -264932 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 258-56 chr10 70281675 70281827 + 2 NA intron (NM_022146, intron 1 of 3) L1ME4a|LINE|L1 2253 NM_022146 64106 Hs.302026 NM_022146 ENSG00000148734 NPFFR1 GPR147|NPFF1|NPFF1R1|OT7T022 neuropeptide FF receptor 1 protein-coding 261-179 chr2 39880196 39880395 + 2 NA Intergenic Intergenic -37339 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 283-14 chr1 101463115 101463304 + 2 NA Intergenic L1PA16|LINE|L1 139372 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 296-403 chr6 68864074 68864280 + 2 NA intron (NM_001704, intron 3 of 31) Tigger15a|DNA|TcMar-Tigger 228895 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 345-222 chr18 51936466 51936723 + 2 NA Intergenic L2c|LINE|L2 -403603 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 452-144 chr2 169166804 169167183 + 2 NA intron (NM_004525, intron 61 of 78) intron (NM_004525, intron 61 of 78) 85886 NM_001142271 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 229-29 chr10 44157998 44158183 + 2 NA Intergenic L1MDa|LINE|L1 -134660 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 487-51 chr11 4730452 4730768 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -32757 NM_030774 81285 Hs.501758 NM_030774 ENSG00000167332 OR51E2 HPRAJ|OR51E3P|OR52A2|PSGR olfactory receptor family 51 subfamily E member 2 protein-coding 357-177 chr19 12883959 12884272 + 2 NA TTS (NM_006563) TTS (NM_006563) -2666 NM_001375 1777 Hs.118243 NM_001375 ENSG00000105612 DNASE2 DNASE2A|DNL|DNL2 deoxyribonuclease 2, lysosomal protein-coding 530-57 chr12 63249360 63249690 + 2 NA Intergenic Intergenic -96715 NM_000706 552 Hs.2131 NM_000706 ENSG00000166148 AVPR1A AVPR V1a|AVPR1|V1aR arginine vasopressin receptor 1A protein-coding 499-172 chr3 97010390 97010855 + 2 NA TTS (NM_001278301) TTS (NM_001278301) 196028 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 415-123 chr2 51611034 51611355 + 2 NA intron (NR_135237, intron 5 of 10) L1P4a|LINE|L1 578593 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 423-266 chr7 45203142 45203367 + 2 NA Intergenic Intergenic 45463 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 364-48 chr10 20862954 20863197 + 2 NA intron (NM_006393, intron 7 of 27) intron (NM_006393, intron 7 of 27) 34527 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 453-245 chr7 20161620 20161987 + 2 NA exon (NM_182762, exon 4 of 7) exon (NM_182762, exon 4 of 7) 19887 NR_046756 100874041 Hs.145104 NR_046756 ENSG00000228598 MACC1-AS1 - MACC1 antisense RNA 1 ncRNA 166-91 chr5 23899785 23899902 + 2 NA Intergenic ALR/Alpha|Satellite|centr -51505 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 318-38 chr1 204631093 204631263 + 2 NA intron (NM_201630, intron 1 of 1) MER5A|DNA|hAT-Charlie 54560 NM_006338 10446 Hs.26312 NM_006338 ENSG00000170382 LRRN2 FIGLER7|GAC1|LRANK1|LRRN5 leucine rich repeat neuronal 2 protein-coding 192-228 chrX 74172526 74172652 + 2 NA intron (NR_028379, intron 5 of 6) L1M3de|LINE|L1 45872 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 209-308 chr7 132697332 132697490 + 2 NA intron (NR_046323, intron 3 of 4) intron (NR_046323, intron 3 of 4) 48617 NR_046323 286023 Hs.671875 NM_173682 ENSG00000183470 FLJ40288 - uncharacterized FLJ40288 ncRNA 505-261 chr6 9553986 9554419 + 2 NA Intergenic (ATTATC)n|Simple_repeat|Simple_repeat -850300 NR_145448 109729173 NR_145448 ENSG00000285278 TFAP2A-AS2 HIPSTR TFAP2A antisense RNA 2 ncRNA 307-332 chr4 27786044 27786201 + 2 NA Intergenic Intergenic 568643 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 341-102 chr11 129536464 129536798 + 2 NA Intergenic MIRb|SINE|MIR 80638 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 307-338 chr4 58618500 58618717 + 2 NA Intergenic Intergenic -82280 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 309-578 chr9 92238589 92238850 + 2 NA intron (NR_073446, intron 29 of 32) L1MDa|LINE|L1 -47563 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 232-213 chr20 31633448 31633638 + 2 NA Intergenic Intergenic -4369 NM_032609 84701 Hs.277101 NM_032609 ENSG00000131055 COX4I2 COX4|COX4-2|COX4B|COX4L2|COXIV-2|dJ857M17.2 cytochrome c oxidase subunit 4I2 protein-coding 342-177 chr16 52721548 52721801 + 2 NA Intergenic Intergenic -114699 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 222-167 chr2 30883626 30883775 + 2 NA Intergenic Intergenic -76254 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 416-322 chr7 104752626 104752903 + 2 NA intron (NM_199000, intron 2 of 2) HERVK-int|LTR|ERVK 51328 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 299-497 chrX 41898265 41898454 + 2 NA intron (NM_003688, intron 1 of 26) L1M2|LINE|L1 24675 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 315-335 chr4 44233525 44233832 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 215131 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 184-116 chr3 111586235 111586380 + 2 NA intron (NM_001318889, intron 5 of 7) intron (NM_001318889, intron 5 of 7) 9039 NM_024508 79413 Hs.136912 NM_024508 ENSG00000177494 ZBED2 - zinc finger BED-type containing 2 protein-coding 648-22 chr11 93854516 93855010 + 2 NA Intergenic MER4-int|LTR|ERV1 -4145 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 207-29 chr1 238980012 238980162 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -406481 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 242-385 chr8 21067067 21067269 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 93182 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 279-292 chr4 59439795 59440003 + 2 NA Intergenic L1M4|LINE|L1 426326 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 643-88 chr4 81746858 81747482 + 2 NA Intergenic Intergenic -275263 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 401-337 chr9 1747004 1747304 + 2 NA Intergenic L1ME4a|LINE|L1 -268193 NM_139045 6595 Hs.298990 NM_003070 ENSG00000080503 SMARCA2 BAF190|BRM|NCBRS|SNF2|SNF2L2|SNF2LA|SWI2|Sth1p|hBRM|hSNF2a SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 268-219 chr20 4295187 4295424 + 2 NA Intergenic Intergenic -46018 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 374-8 chr1 104966931 104967260 + 2 NA Intergenic Intergenic 651840 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 333-285 chr2 205597490 205597722 + 2 NA intron (NM_205863, intron 21 of 21) L1PA16|LINE|L1 -84894 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 374-368 chr7 113234019 113234267 + 2 NA Intergenic Intergenic -115561 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 248-308 chr5 35358159 35358349 + 2 NA Intergenic Intergenic -127767 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 602-141 chrX 25303398 25303840 + 2 NA Intergenic Intergenic -287654 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 272-261 chr3 26078749 26078927 + 2 NA Intergenic Intergenic -205143 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 320-303 chr20 14440949 14441112 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -103363 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 388-52 chr10 90419281 90419598 + 2 NA intron (NR_110657, intron 3 of 6) MER58B|DNA|hAT-Charlie 121366 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 398-395 chrX 86835274 86835586 + 2 NA Intergenic Intergenic 572462 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 321-378 chr3 86494098 86494267 + 2 NA intron (NR_135563, intron 1 of 1) L1M5|LINE|L1 12239 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 330-220 chr18 5872927 5873175 + 2 NA Intergenic MER65A|LTR|ERV1 22903 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 333-128 chr13 26451126 26451414 + 2 NA Intergenic L1MA3|LINE|L1 -106413 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 858-45 chr8 92332744 92333412 + 2 NA Intergenic L1PA11|LINE|L1 -229693 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 753-26 chr16 76359364 76360091 + 2 NA intron (NR_136213, intron 3 of 23) intron (NR_136213, intron 3 of 23) 49875 NM_138994 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 293-110 chr14 29177030 29177265 + 2 NA Intergenic MER4D1|LTR|ERV1 -391360 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 259-149 chr16 22986998 22987210 + 2 NA Intergenic Intergenic 162166 NM_020718 57478 Hs.183817 NM_020718 ENSG00000103404 USP31 - ubiquitin specific peptidase 31 protein-coding 539-13 chr1 158280602 158281021 + 2 NA Intergenic Zaphod2|DNA|hAT-Tip100 -9112 NM_001765 911 Hs.132448 NM_001765 ENSG00000158481 CD1C BDCA1|CD1|CD1A|R7 CD1c molecule protein-coding 131-79 chr8 132722421 132722487 + 2 NA intron (NM_001145153, intron 5 of 8) intron (NM_001145153, intron 5 of 8) 38128 NM_144649 137835 Hs.293842 NM_144649 ENSG00000165071 TMEM71 - transmembrane protein 71 protein-coding 324-54 chr10 43924079 43924294 + 2 NA intron (NR_033846, intron 2 of 7) L2b|LINE|L2 11784 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 320-520 chr7 110767654 110767949 + 2 NA intron (NM_001350963, intron 5 of 5) L2c|LINE|L2 -323205 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 305-566 chr9 107236636 107236825 + 2 NA Intergenic Intergenic -46549 NM_002874 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 114-20 chr16 7013065 7013140 + 2 NA intron (NM_001142334, intron 1 of 13) MLT1A|LTR|ERVL-MaLR 239293 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 188-55 chr14 79122470 79122602 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -77446 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 380-170 chr2 12871394 12871677 + 2 NA Intergenic Intergenic 134168 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 462-295 chr9 28312406 28312712 + 2 NA intron (NM_001354574, intron 4 of 5) intron (NM_001354574, intron 4 of 5) 406746 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 785-15 chr11 32288319 32288972 + 2 NA Intergenic Intergenic 111755 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 664-100 chr6 128637713 128638274 + 2 NA Intergenic Intergenic -117394 NM_002844 5796 Hs.155919 NM_002844 ENSG00000152894 PTPRK R-PTP-kappa protein tyrosine phosphatase receptor type K protein-coding 219-93 chr13 92731544 92731731 + 2 NA intron (NM_004466, intron 7 of 7) L1MEj|LINE|L1 -10023 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 271-175 chr18 9334108 9334340 + 2 NA promoter-TSS (NM_020648) promoter-TSS (NM_020648) -549 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 216-269 chr4 182487364 182487524 + 2 NA intron (NM_001080477, intron 3 of 27) intron (NM_001080477, intron 3 of 27) 244042 NM_001080477 55714 Hs.130438 NM_001080477 ENSG00000218336 TENM3 MCOPCB9|ODZ3|TNM3|Ten-m3|ten-3 teneurin transmembrane protein 3 protein-coding 263-460 chrX 65339454 65339687 + 2 NA Intergenic L1PA13|LINE|L1 -149165 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 545-42 chr11 87166038 87166470 + 2 NA intron (NR_033149, intron 4 of 13) L1P2|LINE|L1 128320 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 399-239 chr5 15726997 15727234 + 2 NA intron (NM_001278317, intron 2 of 3) L1M4c|LINE|L1 -112113 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 398-307 chr6 130409790 130410011 + 2 NA intron (NM_001258277, intron 2 of 2) intron (NM_001258277, intron 2 of 2) -11196 NM_001258278 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 366-297 chr4 441266 441565 + 2 NA 3' UTR (NM_133474, exon 3 of 3) 3' UTR (NM_133474, exon 3 of 3) 32794 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 549-138 chr3 61241661 61242099 + 2 NA intron (NM_001320900, intron 1 of 9) intron (NM_001320900, intron 1 of 9) 9572 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 326-254 chr2 105689176 105689488 + 2 NA Intergenic Intergenic -55580 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 347-268 chr20 42158040 42158253 + 2 NA intron (NM_133170, intron 18 of 31) MLT1G|LTR|ERVL-MaLR -527337 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 345-196 chr16 79250416 79250680 + 2 NA Intergenic Intergenic 350189 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 458-26 chr10 83509854 83510117 + 2 NA Intergenic L1ME1|LINE|L1 167104 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 475-264 chr7 57147998 57148300 + 2 NA Intergenic Intergenic -8285 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 209-91 chr14 62316362 62316523 + 2 NA Intergenic MER20|DNA|hAT-Charlie -176469 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 407-210 chr3 163583658 163584044 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -280550 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 465-320 chrX 67306207 67306627 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -237604 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 177-137 chr5 161682126 161682267 + 2 NA Intergenic Intergenic -3525 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 345-465 chr6 46277809 46278139 + 2 NA intron (NR_125838, intron 1 of 3) intron (NR_125838, intron 1 of 3) 1650 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 622-133 chr7 112735421 112735867 + 2 NA Intergenic Intergenic 54749 NM_022484 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 393-305 chr6 51439963 51440167 + 2 NA Intergenic L1MA8|LINE|L1 -181805 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 313-106 chr12 25747577 25747747 + 2 NA Intergenic Intergenic -99084 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 415-314 chrX 75812271 75812608 + 2 NA Intergenic L1PB2|LINE|L1 -27185 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 221-244 chr5 87081538 87081691 + 2 NA Intergenic Intergenic 33340 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 411-293 chr8 113472034 113472298 + 2 NA Intergenic Intergenic -35227 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 554-133 chr20 20979455 20979948 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 126657 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 334-52 chr10 43008618 43008929 + 2 NA Intergenic L1MC3|LINE|L1 11210 NR_049836 100847014 NR_049836 ENSG00000263795 MIR5100 - microRNA 5100 ncRNA 210-92 chr16 9422335 9422483 + 2 NA Intergenic Intergenic 22576 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 246-239 chr21 21125388 21125604 + 2 NA intron (NM_001352595, intron 1 of 14) (AT)n|Simple_repeat|Simple_repeat -21666 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 200-218 chr5 90412514 90412669 + 2 NA Intergenic Intergenic 2591 NR_105024 731157 Hs.551062 NR_105024 ENSG00000255647 LOC731157 - uncharacterized LOC731157 ncRNA 593-10 chr1 246968977 246969369 + 2 NA intron (NM_001204221, intron 4 of 5) MSTA-int|LTR|ERVL-MaLR -37225 NM_001323343 25909 Hs.300887 NM_015446 ENSG00000153207 AHCTF1 ELYS|MST108|MSTP108|TMBS62 AT-hook containing transcription factor 1 protein-coding 173-72 chr2 118524767 118524877 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 78144 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 456-290 chr6 162966820 162967097 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 87203 NR_110872 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 212-166 chr2 117371924 117372079 + 2 NA Intergenic MER49|LTR|ERV1 -442690 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 412-58 chr11 115287494 115287728 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -45966 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 227-18 chr1 184378294 184378458 + 2 NA Intergenic L1MB7|LINE|L1 -8653 NM_030806 81563 Hs.497159 NM_030806 ENSG00000116667 C1orf21 PIG13 chromosome 1 open reading frame 21 protein-coding 442-200 chr3 152644109 152644428 + 2 NA Intergenic L1M4|LINE|L1 -190863 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 343-362 chr3 154882719 154882944 + 2 NA Intergenic L1MC1|LINE|L1 -141293 NM_001354642 4311 Hs.307734 NM_000902 ENSG00000196549 MME CALLA|CD10|CMT2T|NEP|SCA43|SFE membrane metalloendopeptidase protein-coding 194-78 chr18 9633050 9633165 + 2 NA Intergenic Intergenic 17843 NR_110774 101927323 Hs.151204 NR_110773 ENSG00000263627 PPP4R1-AS1 - PPP4R1 antisense RNA 1 ncRNA 417-181 chr3 109229017 109229344 + 2 NA Intergenic Intergenic 51015 NR_026767 677779 Hs.618669 NM_001040054 ENSG00000214381 LINC00488 C3orf66 long intergenic non-protein coding RNA 488 ncRNA 336-307 chr2 208924990 208925224 + 2 NA Intergenic L1PA16|LINE|L1 382465 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 175-73 chr2 16013872 16014034 + 2 NA Intergenic CpG -36474 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 472-262 chr6 13861755 13862199 + 2 NA Intergenic L1M5|LINE|L1 -47417 NM_001031713 63933 Hs.214043 NM_022102 ENSG00000050393 MCUR1 C6orf79|CCDC90A|FMP32 mitochondrial calcium uniporter regulator 1 protein-coding 238-146 chr18 8466188 8466359 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -99239 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 245-210 chr2 190568938 190569134 + 2 NA Intergenic HAL1|LINE|L1 -34314 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 314-103 chr11 79020584 79020830 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 381402 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 468-118 chr17 60317218 60317651 + 2 NA intron (NM_032582, intron 2 of 33) AluJb|SINE|Alu 74699 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 257-452 chrX 67162237 67162462 + 2 NA Intergenic L1MA1|LINE|L1 -381672 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 231-287 chr5 68579911 68580136 + 2 NA Intergenic L1MC|LINE|L1 287446 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 337-323 chr21 27154591 27154766 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -187590 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 360-275 chr21 15382894 15383133 + 2 NA Intergenic Intergenic -318013 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 199-52 chr13 113959294 113959467 + 2 NA intron (NM_001365455, intron 6 of 6).2 intron (NM_001365455, intron 6 of 6).2 14696 NM_001365455 100507747 Hs.704267 NM_001365455 ENSG00000283199 C13orf46 - chromosome 13 open reading frame 46 protein-coding 389-168 chr2 58393992 58394272 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 118255 NR_147010 105374744 Hs.447687 NR_147010 ENSG00000225226 LINC01795 - long intergenic non-protein coding RNA 1795 ncRNA 343-516 chr7 94842110 94842432 + 2 NA Intergenic L1MEf|LINE|L1 -65323 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 328-403 chr4 63437294 63437487 + 2 NA Intergenic L1PA17|LINE|L1 972060 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 221-26 chr1 214043742 214043938 + 2 NA Intergenic Intergenic 55307 NM_002763 5629 Hs.741808 NM_002763 ENSG00000117707 PROX1 - prospero homeobox 1 protein-coding 459-98 chr16 8311026 8311411 + 2 NA Intergenic Intergenic 278620 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 478-103 chr15 98816043 98816431 + 2 NA intron (NM_000875, intron 2 of 20) intron (NM_000875, intron 2 of 20) 31811 NR_039864 100616432 NR_039864 ENSG00000264480 MIR4714 - microRNA 4714 ncRNA 378-190 chr18 28651364 28651592 + 2 NA Intergenic Intergenic -474348 NM_001792 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 199-261 chrX 16881026 16881157 + 2 NA Intergenic L1MB8|LINE|L1 -10729 NM_002893 5931 Hs.495755 NM_002893 ENSG00000102054 RBBP7 RbAp46 RB binding protein 7, chromatin remodeling factor protein-coding 373-205 chr2 126925551 126925758 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 26764 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 278-156 chr17 14322008 14322187 + 2 NA intron (NR_130138, intron 1 of 2) intron (NR_130138, intron 1 of 2) 18357 NR_026880 84815 Hs.597458 NM_032729 ENSG00000266709 MGC12916 - uncharacterized protein MGC12916 ncRNA 364-131 chr14 69936929 69937262 + 2 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -41038 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 292-476 chrX 66829072 66829328 + 2 NA Intergenic L1ME1|LINE|L1 -189902 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 281-399 chr6 118661639 118661820 + 2 NA intron (NM_001178035, intron 1 of 13) intron (NM_001178035, intron 1 of 13) -10138 NM_001042475 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 431-283 chr7 153268288 153268569 + 2 NA Intergenic Intergenic 143806 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 286-168 chr18 2386846 2387056 + 2 NA Intergenic L1ME1|LINE|L1 184554 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 1064-18 chr8 143163897 143164805 + 2 NA Intergenic AluSx|SINE|Alu -3697 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 253-22 chr1 177432904 177433115 + 2 NA Intergenic MIR3|SINE|MIR 81423 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 385-131 chr17 33978046 33978333 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 178617 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 241-2 chr1 4995461 4995642 + 2 NA Intergenic L1MD1|LINE|L1 340942 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 210-296 chr8 122428286 122428489 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 140257 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 284-311 chr5 21093518 21093727 + 2 NA Intergenic Intergenic -365858 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 386-29 chr10 30881081 30881379 + 2 NA intron (NM_001143766, intron 5 of 7) L1ME1|LINE|L1 118287 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 382-401 chr8 48411440 48411700 + 2 NA Intergenic L1MB5|LINE|L1 -139997 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 534-10 chr1 154174018 154174371 + 2 NA intron (NM_001278188, intron 1 of 6) AluSx1|SINE|Alu 4010 NM_001278191 7170 Hs.535581 NM_152263 ENSG00000143549 TPM3 CAPM1|CFTD|HEL-189|HEL-S-82p|NEM1|OK/SW-cl.5|TM-5|TM3|TM30|TM30nm|TM5|TPM3nu|TPMsk3|TRK|hscp30 tropomyosin 3 protein-coding 568-83 chr18 2231595 2232034 + 2 NA Intergenic Intergenic 339691 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 633-39 chr14 36676084 36676562 + 2 NA exon (NM_006194, exon 5 of 5) exon (NM_006194, exon 5 of 5) 18755 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 797-29 chr2 181122712 181123270 + 2 NA promoter-TSS (NR_130784) promoter-TSS (NR_130784) -846 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 410-309 chr8 93654221 93654492 + 2 NA intron (NR_033858, intron 5 of 10) intron (NR_033858, intron 5 of 10) 46077 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 330-364 chr3 166774657 166774883 + 2 NA Intergenic AluSx1|SINE|Alu -123913 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 355-232 chr2 25171571 25171851 + 2 NA Intergenic L1M5|LINE|L1 -2860 NM_001035256 5443 Hs.1897 NM_000939 ENSG00000115138 POMC ACTH|CLIP|LPH|MSH|NPP|OBAIRH|POC proopiomelanocortin protein-coding 747-9 chr10 83836736 83837304 + 2 NA Intergenic Intergenic -159931 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 358-491 chr8 117533952 117534196 + 2 NA intron (NM_080651, intron 3 of 3) intron (NM_080651, intron 3 of 3) 13361 NM_001282986 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 364-394 chr6 143540995 143541180 + 2 NA Intergenic AluJo|SINE|Alu 20964 NR_110148 285740 Hs.432656 NR_027113 ENSG00000235740 PHACTR2-AS1 - PHACTR2 antisense RNA 1 ncRNA 324-246 chr19 56484529 56484842 + 2 NA intron (NR_036521, intron 1 of 1) L2a|LINE|L2 6561 NR_036522 100128252 Hs.23133 NM_198879 ENSG00000166770 ZNF667-AS1 MORT ZNF667 antisense RNA 1 (head to head) ncRNA 367-198 chr2 67545967 67546227 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 148764 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 206-290 chrX 46503600 46503766 + 2 NA intron (NM_001190417, intron 5 of 5) intron (NM_001190417, intron 5 of 5) 41738 NM_001039891 641339 Hs.636105 NM_001039891 ENSG00000251192 ZNF674 MRX92|ZNF673B zinc finger protein 674 protein-coding 331-255 chr2 41762048 41762319 + 2 NA Intergenic Intergenic -115372 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 312-528 chr8 108634223 108634395 + 2 NA intron (NR_136411, intron 2 of 3) intron (NR_136411, intron 2 of 3) 153285 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 307-161 chr15 69654505 69654674 + 2 NA intron (NR_126437, intron 3 of 5) L4_C_Mam|LINE|RTE-X 62389 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 341-137 chr13 59899670 59899895 + 2 NA intron (NM_001258369, intron 20 of 26) intron (NM_001258369, intron 20 of 26) -112936 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 317-99 chr12 2715809 2716100 + 2 NA Intergenic L1PA17|LINE|L1 -24797 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 234-142 chr18 8028025 8028184 + 2 NA intron (NM_002845, intron 7 of 30) AluSz6|SINE|Alu 338930 NR_024419 100192426 Hs.666655 NR_024419 ENSG00000266149 LOC100192426 - uncharacterized LOC100192426 ncRNA 383-4 chr1 28003940 28004289 + 2 NA intron (NM_001282562, intron 10 of 16) intron (NM_001282562, intron 10 of 16) 44652 NM_018053 55113 Hs.55024 NM_018053 ENSG00000158156 XKR8 XRG8|hXkr8 XK related 8 protein-coding 191-41 chr12 33284267 33284418 + 2 NA Intergenic Intergenic 155477 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 351-211 chr2 48839336 48839545 + 2 NA Intergenic L1MA6|LINE|L1 -83716 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 263-269 chr3 158033508 158033690 + 2 NA Intergenic L1PBb|LINE|L1 72564 NM_003030 6474 Hs.55967 NM_003030 ENSG00000168779 SHOX2 OG12|OG12X|SHOT short stature homeobox 2 protein-coding 309-10 chr1 97058281 97058519 + 2 NA Intergenic Intergenic -37523 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 384-189 chr2 189350174 189350441 + 2 NA Intergenic Intergenic -91126 NM_001303096 84128 Hs.399984 NM_032168 ENSG00000115368 WDR75 NET16|UTP17 WD repeat domain 75 protein-coding 339-259 chr2 66919595 66919869 + 2 NA intron (NR_110169, intron 1 of 4) intron (NR_110169, intron 1 of 4) 2758 NR_110600 102724321 Hs.146803 NR_110600 ENSG00000232688 LINC01628 - long intergenic non-protein coding RNA 1628 ncRNA 328-573 chr8 112457699 112457926 + 2 NA intron (NM_052900, intron 31 of 68) intron (NM_052900, intron 31 of 68) -185681 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 834-2 chr10 54673430 54674085 + 2 NA intron (NM_001354404, intron 4 of 34) (ATATTA)n|Simple_repeat|Simple_repeat -65800 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 559-32 chr12 18776004 18776437 + 2 NA Intergenic LTR86B1|LTR|ERVL 38101 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 169-103 chr5 134253672 134253798 + 2 NA Intergenic Intergenic -27662 NM_002715 5515 Hs.105818 NM_002715 ENSG00000113575 PPP2CA NEDLBA|PP2Ac|PP2CA|PP2Calpha|RP-C protein phosphatase 2 catalytic subunit alpha protein-coding 243-129 chr14 62207987 62208138 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -68089 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 333-415 chr4 146754641 146754924 + 2 NA intron (NR_133922, intron 12 of 13) L1M2a|LINE|L1 115889 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 391-375 chr9 26041036 26041254 + 2 NA Intergenic L1MEc|LINE|L1 -25530 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 359-302 chr22 26161407 26161704 + 2 NA Intergenic Intergenic -7907 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 272-84 chr12 4907957 4908167 + 2 NA Intergenic Intergenic -1843 NM_000217 3736 Hs.416139 NM_000217 ENSG00000111262 KCNA1 AEMK|EA1|HBK1|HUK1|KV1.1|MBK1|MK1|RBK1 potassium voltage-gated channel subfamily A member 1 protein-coding 314-6 chr1 34119268 34119519 + 2 NA intron (NM_052896, intron 1 of 69) L1MB2|LINE|L1 45881 NM_001281956 114784 Hs.656915 NM_052896 ENSG00000121904 CSMD2 dJ1007G16.1|dJ1007G16.2|dJ947L8.1 CUB and Sushi multiple domains 2 protein-coding 324-400 chr4 101222879 101223081 + 2 NA intron (NM_001130691, intron 1 of 12) Tigger19b|DNA|TcMar-Tigger 17892 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 176-16 chr11 67187263 67187390 + 2 NA intron (NR_027473, intron 5 of 20) L1M4c|LINE|L1 -52688 NM_001256405 22992 Hs.124147 NM_012308 ENSG00000173120 KDM2A CXXC8|FBL11|FBL7|FBXL11|JHDM1A|LILINA lysine demethylase 2A protein-coding 500-283 chr8 24922348 24922691 + 2 NA Intergenic Intergenic 7532 NM_001105541 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 454-200 chr3 22800679 22801009 + 2 NA Intergenic Intergenic 401734 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 335-491 chr7 13848082 13848319 + 2 NA Intergenic Intergenic 138314 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 203-223 chr7 77812386 77812544 + 2 NA intron (NM_001366088, intron 1 of 11) intron (NM_001366088, intron 1 of 11) 13494 NM_001366086 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 356-283 chr20 24273395 24273613 + 2 NA Intergenic LTR52|LTR|ERVL 73737 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 351-490 chr8 90403873 90404197 + 2 NA Intergenic Intergenic 182547 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 260-333 chr5 4599648 4599823 + 2 NA Intergenic Intergenic -173746 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 222-265 chr4 55520211 55520358 + 2 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 25648 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 291-153 chr15 85422868 85423127 + 2 NA intron (NM_007200, intron 1 of 36) Tigger1|DNA|TcMar-Tigger 42394 NM_007200 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 290-139 chr14 80481691 80481918 + 2 NA Intergenic Intergenic -250747 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 210-157 chr21 19178797 19178995 + 2 NA Intergenic Intergenic -419084 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 340-269 chr2 96170367 96170607 + 2 NA Intergenic Intergenic -25047 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 338-425 chr5 40027663 40027846 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -24537 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 268-20 chr1 199182861 199183080 + 2 NA intron (NR_147896, intron 3 of 3) Charlie17|DNA|hAT-Charlie 34372 NR_147896 400800 Hs.369324 NR_147896 ENSG00000231718 LINC02789 - long intergenic non-protein coding RNA 2789 ncRNA 234-240 chr3 87844912 87845052 + 2 NA intron (NM_001322210, intron 2 of 2) L1PA3|LINE|L1 52276 NM_001322208 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 241-286 chr5 9774401 9774613 + 2 NA intron (NR_027112, intron 4 of 12) L1MA3|LINE|L1 -79870 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 196-135 chr2 129746282 129746393 + 2 NA Intergenic L1MB5|LINE|L1 131154 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 292-175 chr17 71380958 71381199 + 2 NA Intergenic Intergenic -178899 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 737-71 chr5 144000207 144000717 + 2 NA Intergenic HSMAR2|DNA|TcMar-Mariner 170197 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 261-418 chrX 76920316 76920496 + 2 NA intron (NR_110403, intron 1 of 3) MIRb|SINE|MIR -1046 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 523-9 chr1 158586368 158586716 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -6643 NM_001004477 128367 Hs.553589 NM_001004477 ENSG00000279111 OR10X1 OR1-13|OR1-14|OR10X1P olfactory receptor family 10 subfamily X member 1 (gene/pseudogene) protein-coding 442-180 chr3 10094487 10094808 + 2 NA intron (NM_001018115, intron 40 of 43) intron (NM_001018115, intron 40 of 43) 13608 NM_001164839 115795 Hs.190413 NM_173472 ENSG00000163705 FANCD2OS C3orf24 FANCD2 opposite strand protein-coding 333-336 chr22 47765730 47766033 + 2 NA intron (NR_122046, intron 8 of 8) intron (NR_122046, intron 8 of 8) 134207 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 693 chr1 22367754 22368386 + 2 NA Intergenic Intergenic -83781 NM_001330398 9923 Hs.418966 NM_014870 ENSG00000184677 ZBTB40 ZNF923 zinc finger and BTB domain containing 40 protein-coding 491-153 chr21 28896173 28896588 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -11007 NR_047510 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 320-383 chr4 37576348 37576553 + 2 NA intron (NM_001104629, intron 2 of 3) L1MA3|LINE|L1 -7783 NM_018302 55286 Hs.107527 NM_018302 ENSG00000154274 C4orf19 - chromosome 4 open reading frame 19 protein-coding 338-472 chr6 87128502 87128685 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -26972 NM_001351444 23036 Hs.444800 NM_015021 ENSG00000188994 ZNF292 Nbla00365|ZFP292|ZN-16|Zn-15|bA393I2.3 zinc finger protein 292 protein-coding 193-206 chr8 122442681 122442867 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 125870 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 387-248 chr4 38518481 38518786 + 2 NA TTS (NR_149076) TTS (NR_149076) 4547 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 382-201 chr2 82402670 82402900 + 2 NA Intergenic L1M2a|LINE|L1 -454018 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 134-2 chr1 60783005 60783097 + 2 NA intron (NR_110628, intron 1 of 5) MER89-int|LTR|ERV1 42533 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 168-88 chr5 25958385 25958522 + 2 NA Intergenic Intergenic 767500 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 338-159 chr14 32458353 32458607 + 2 NA intron (NM_004274, intron 2 of 13) intron (NM_004274, intron 2 of 13) 129182 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 330-235 chr19 22341149 22341405 + 2 NA Intergenic BSR/Beta|Satellite|Satellite 54836 NM_001242680 100287226 Hs.531629 NM_001242680 ENSG00000196350 ZNF729 - zinc finger protein 729 protein-coding 243-429 chr7 121082151 121082368 + 2 NA intron (NM_001105533, intron 4 of 17) intron (NM_001105533, intron 4 of 17) 92868 NM_001105533 79974 Hs.189652 NM_024913 ENSG00000106034 CPED1 C7orf58 cadherin like and PC-esterase domain containing 1 protein-coding 256-153 chr16 49816018 49816237 + 2 NA intron (NM_001271620, intron 1 of 7) AluSx1|SINE|Alu 6611 NM_015069 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 297-190 chr19 34715228 34715434 + 2 NA Intergenic L1MA5|LINE|L1 -18912 NM_001145665 339318 Hs.720472 NM_001029997 ENSG00000197841 ZNF181 HHZ181 zinc finger protein 181 protein-coding 336-402 chr4 41704131 41704348 + 2 NA Intergenic Intergenic 44731 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 361-17 chr1 159707728 159707934 + 2 NA Intergenic Intergenic 6758 NM_001329058 1401 Hs.76452 NM_000567 ENSG00000132693 CRP PTX1 C-reactive protein protein-coding 316-159 chr14 23788006 23788223 + 2 NA Intergenic Intergenic 151750 NM_182908 10202 Hs.272499 NM_005794 ENSG00000100867 DHRS2 HEP27|SDR25C1 dehydrogenase/reductase 2 protein-coding 312-480 chr7 31689372 31689534 + 2 NA intron (NM_001145123, intron 1 of 3) intron (NM_001145123, intron 1 of 3) 2238 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 381-76 chr11 93317402 93317750 + 2 NA Intergenic Intergenic -13141 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 463-20 chr1 106770118 106770489 + 2 NA Intergenic Intergenic -47936 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 556-159 chr4 91673099 91673614 + 2 NA Intergenic L1MC3|LINE|L1 603946 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 359-209 chr19 37669884 37670129 + 2 NA exon (NM_152605, exon 4 of 4) exon (NM_152605, exon 4 of 4) -13745 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 185-84 chr18 63546649 63546795 + 2 NA Intergenic Intergenic -9438 NM_001307928 89777 Hs.348541 NM_080474 ENSG00000166634 SERPINB12 YUKOPIN serpin family B member 12 protein-coding 288-80 chr12 17019084 17019250 + 2 NA Intergenic Intergenic 30420 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 483-160 chr3 26068651 26068955 + 2 NA Intergenic Intergenic -195108 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 256-199 chr2 81883241 81883467 + 2 NA Intergenic L3|LINE|CR1 -416408 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 117-40 chr7 29361207 29361308 + 2 NA intron (NM_001293071, intron 2 of 11) intron (NM_001293071, intron 2 of 11) -118455 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 267-195 chr2 108136861 108137100 + 2 NA Intergenic Intergenic 80861 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 165-35 chr14 96676014 96676150 + 2 NA Intergenic Intergenic -65109 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 156-46 chr18 2313407 2313522 + 2 NA Intergenic Intergenic 258041 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 473-265 chr8 36207935 36208393 + 2 NA Intergenic Intergenic -497844 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 378-173 chr17 58875253 58875597 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 119556 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 244-369 chr8 87959472 87959683 + 2 NA Intergenic Intergenic -85562 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 162-82 chr3 54023437 54023575 + 2 NA Intergenic L1ME3G|LINE|L1 -99046 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 382-309 chr4 142484563 142484832 + 2 NA intron (NM_003866, intron 2 of 26) L1PA12|LINE|L1 361838 NM_001101669 8821 Hs.176376 NM_003866 ENSG00000109452 INPP4B - inositol polyphosphate-4-phosphatase type II B protein-coding 126-52 chr5 58072841 58072943 + 2 NA Intergenic Intergenic 49449 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 382-22 chr1 199764246 199764626 + 2 NA Intergenic MER3|DNA|hAT-Charlie -263274 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 237-263 chr4 37155666 37155893 + 2 NA Intergenic Intergenic 86212 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 766-26 chr18 6289014 6289537 + 2 NA intron (NM_001365769, intron 4 of 16) MER101-int|LTR|ERV1 32531 NR_110765 101927150 NR_110765 L3MBTL4-AS1 - L3MBTL4 antisense RNA 1 ncRNA 303-66 chr11 37772442 37772643 + 2 NA Intergenic Intergenic -166059 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 493-307 chr8 140320059 140320399 + 2 NA intron (NM_001160372, intron 9 of 22) intron (NM_001160372, intron 9 of 22) 137515 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 608-88 chr20 59098182 59098558 + 2 NA Intergenic L1MC1|LINE|L1 -55524 NR_037929 100533975 Hs.656865 NR_037929 SLMO2-ATP5E - SLMO2-ATP5E readthrough ncRNA 222-216 chr21 19065762 19065926 + 2 NA Intergenic Intergenic -306032 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 621-141 chr9 75399733 75400266 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 311485 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 381-279 chr4 103009541 103009909 + 2 NA intron (NR_047515, intron 1 of 10) intron (NR_047515, intron 1 of 10) 9980 NM_139173 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 342-123 chr12 116773614 116773896 + 2 NA intron (NM_001109903, intron 6 of 11) Charlie18a|DNA|hAT-Charlie 35440 NM_032814 84900 Hs.437195 NM_032814 ENSG00000135119 RNFT2 TMEM118 ring finger protein, transmembrane 2 protein-coding 388-217 chr3 12207529 12207753 + 2 NA Intergenic L1M4|LINE|L1 -48729 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 345-11 chr1 92216587 92216912 + 2 NA Intergenic L2a|LINE|L2 -1166 NM_001012425 388649 Hs.558823 NM_001012425 ENSG00000203910 C1orf146 - chromosome 1 open reading frame 146 protein-coding 224-122 chr18 3928129 3928302 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -34138 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 540-160 chr4 91685505 91685991 + 2 NA Intergenic Intergenic 591554 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 270-359 chr7 43547751 43547997 + 2 NA intron (NM_001287059, intron 24 of 27) Tigger2|DNA|TcMar-Tigger -25332 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 384-216 chr3 7765117 7765328 + 2 NA Intergenic Intergenic -229938 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 382-229 chr2 221331724 221331967 + 2 NA Intergenic Intergenic 240459 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 210-64 chr13 37033688 37033875 + 2 NA intron (NM_001014286, intron 9 of 25) intron (NM_001014286, intron 9 of 25) 25706 NM_001278482 55578 Hs.435815 NM_017569 ENSG00000102710 SUPT20H C13|C13orf19|FAM48A|FP757|P38IP|SPT20 SPT20 homolog, SAGA complex component protein-coding 121-75 chr9 103998389 103998479 + 2 NA Intergenic Intergenic -1275 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 360-65 chr11 71182364 71182581 + 2 NA intron (NM_012309, intron 1 of 24) MLT1C|LTR|ERVL-MaLR 42324 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 549-77 chr16 87608749 87609261 + 2 NA intron (NM_020655, intron 1 of 4) AluJb|SINE|Alu 6497 NM_001271604 57338 Hs.592068 NM_020655 ENSG00000154118 JPH3 CAGL237|HDL2|JP-3|JP3|TNRC22 junctophilin 3 protein-coding 411-294 chr8 118650924 118651232 + 2 NA intron (NR_038210, intron 2 of 4) intron (NR_038210, intron 2 of 4) -29115 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 312-321 chr3 29039949 29040117 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 240906 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 225-301 chr5 168006165 168006341 + 2 NA intron (NM_001080428, intron 3 of 24) intron (NM_001080428, intron 3 of 24) -159592 NR_162139 113219458 NR_162139 MIR12125 - microRNA 12125 ncRNA 488-162 chr21 20651700 20652158 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger 151179 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 179 chr1 37204006 37204112 + 2 NA Intergenic L1MA7|LINE|L1 42496 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 217-98 chr13 34792680 34792841 + 2 NA Intergenic Intergenic -149527 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 383-88 chr12 117592586 117592838 + 2 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -230910 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 236-392 chrX 40053749 40053979 + 2 NA intron (NM_001123384, intron 13 of 13) intron (NM_001123384, intron 13 of 13) 43602 NM_001123385 54880 Hs.659681 NM_017745 ENSG00000183337 BCOR ANOP2|MAA2|MCOPS2 BCL6 corepressor protein-coding 246-125 chr14 82442526 82442692 + 2 NA Intergenic Intergenic -200023 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 563-195 chr9 79004106 79004517 + 2 NA Intergenic Intergenic 141355 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 162-136 chr8 112731151 112731246 + 2 NA intron (NM_001363185, intron 11 of 66) intron (NM_001363185, intron 11 of 66) 87705 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 239-358 chr6 104003732 104003900 + 2 NA Intergenic Intergenic 855730 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 275-343 chr7 100783780 100783922 + 2 NA intron (NR_111919, intron 35 of 46) L1M5|LINE|L1 -43018 NM_001363494 56996 Hs.521087 NM_020246 ENSG00000146828 SLC12A9 CCC6|CIP1|WO3.3|hCCC6 solute carrier family 12 member 9 protein-coding 360-153 chr16 24370635 24370834 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 115181 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 325-394 chr4 63450685 63450971 + 2 NA Intergenic Intergenic 958622 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 296-112 chr12 106009857 106010074 + 2 NA Intergenic L1MC4|LINE|L1 130068 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 317-177 chr15 99603943 99604104 + 2 NA intron (NM_001352615, intron 3 of 12) L1MEc|LINE|L1 -28955 NM_001130928 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 441-255 chr8 43618553 43618955 + 2 NA Intergenic ALR/Alpha|Satellite|centr 326312 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 518-208 chr4 77476510 77476813 + 2 NA Intergenic L1PA17|LINE|L1 -35092 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 242-80 chr12 60976511 60976730 + 2 NA Intergenic Intergenic 1216219 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 161-107 chr7 82958539 82958653 + 2 NA intron (NM_033026, intron 4 of 24) intron (NM_033026, intron 4 of 24) 204288 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 323-344 chr3 130627448 130627706 + 2 NA intron (NM_001102608, intron 25 of 35) intron (NM_001102608, intron 25 of 35) 67243 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 327-424 chr5 156976196 156976469 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -13106 NM_001146726 91937 Hs.334907 NM_138379 ENSG00000145850 TIMD4 SMUCKLER|TIM4 T cell immunoglobulin and mucin domain containing 4 protein-coding 130-67 chr5 14239364 14239449 + 2 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 96064 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 303-173 chr18 9295949 9296103 + 2 NA Intergenic AluSx|SINE|Alu -38747 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 420-200 chr4 66305544 66305879 + 2 NA Intergenic Intergenic 28887 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 247-422 chr8 144843086 144843315 + 2 NA TTS (NM_001282797) TTS (NM_001282797) 9848 NM_001081004 28991 Hs.493218 NM_014066 ENSG00000170619 COMMD5 HCARG|HT002 COMM domain containing 5 protein-coding 501-76 chr16 47766770 47767094 + 2 NA Intergenic L1MCa|LINE|L1 -91649 NR_110650 101927132 Hs.589404 NR_110650 ENSG00000261231 LINC02133 - long intergenic non-protein coding RNA 2133 ncRNA 443-186 chr20 53195285 53195530 + 2 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 10124 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 231-28 chr10 15146883 15147094 + 2 NA intron (NM_001308295, intron 1 of 12) AluJr|SINE|Alu 8359 NR_036506 100192204 Hs.714691 NR_036506 ENSG00000206448 PPIAP30 - peptidylprolyl isomerase A pseudogene 30 pseudo 250-448 chr8 138235004 138235154 + 2 NA intron (NM_015912, intron 7 of 19) ORSL|DNA|hAT-Tip100 -151534 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 413-98 chr15 54959025 54959337 + 2 NA Intergenic Intergenic -97566 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 228-167 chr2 84098390 84098564 + 2 NA Intergenic Intergenic -192205 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 460-27 chr10 20909872 20910192 + 2 NA intron (NM_001173484, intron 4 of 6) intron (NM_001173484, intron 4 of 6) -12430 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 372-96 chr12 5150019 5150361 + 2 NA Intergenic L2a|LINE|L2 92961 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 380-105 chr12 133186793 133186988 + 2 NA intron (NM_001165884, intron 2 of 2) L1MC5a|LINE|L1 5395 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 317-347 chr4 52486808 52487064 + 2 NA Intergenic L1MEc|LINE|L1 169603 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 312-454 chr6 72942235 72942399 + 2 NA intron (NM_001160132, intron 1 of 13) intron (NM_001160132, intron 1 of 13) 25436 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 357-168 chr18 32838583 32838802 + 2 NA Intergenic Intergenic -65669 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 421-115 chr18 36415315 36415599 + 2 NA intron (NM_001281740, intron 3 of 28) intron (NM_001281740, intron 3 of 28) 117744 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 366-362 chr5 176751901 176752104 + 2 NA Intergenic L1MB3|LINE|L1 8797 NR_108030 102577424 Hs.349025 NR_108030 ENSG00000248859 LINC01574 HI-LNC12 long intergenic non-protein coding RNA 1574 ncRNA 350-448 chr6 122139643 122139942 + 2 NA Intergenic Intergenic -259759 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 434-127 chr19 29482425 29482657 + 2 NA intron (NR_040029, intron 1 of 9) MER87B|LTR|ERV1 43211 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 305-217 chr18 43663601 43663813 + 2 NA Intergenic Intergenic -386217 NM_020783 6860 Hs.8059 NM_020783 ENSG00000132872 SYT4 HsT1192 synaptotagmin 4 protein-coding 558-108 chr2 200792408 200792811 + 2 NA intron (NR_135012, intron 30 of 30) AluJb|SINE|Alu -18937 NM_014670 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 343-276 chr2 148804711 148805013 + 2 NA Intergenic L1MB5|LINE|L1 -70365 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 313-141 chr14 48767931 48768215 + 2 NA Intergenic Intergenic 818307 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 311-285 chr2 226998034 226998280 + 2 NA 3' UTR (NM_001167608, exon 9 of 9) 3' UTR (NM_001167608, exon 9 of 9) 162103 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 466-53 chr11 104602307 104602614 + 2 NA intron (NR_120585, intron 1 of 3) Tigger2b_Pri|DNA|TcMar-Tigger 6842 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 271-483 chr9 98641986 98642194 + 2 NA intron (NM_005458, intron 1 of 18) intron (NM_005458, intron 1 of 18) 66845 NM_005458 9568 Hs.198612 NM_005458 ENSG00000136928 GABBR2 EIEE59|GABABR2|GPR51|GPRC3B|HG20|HRIHFB2099|NDPLHS gamma-aminobutyric acid type B receptor subunit 2 protein-coding 672-123 chrX 58304449 58304827 + 2 NA Intergenic ALR/Alpha|Satellite|centr -394005 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 271-487 chrX 56651752 56651975 + 2 NA Intergenic L1PA11|LINE|L1 -77380 NM_001348129 550643 Hs.355559 NM_001348129 ENSG00000204272 NBDY LINC01420|NoBody negative regulator of P-body association protein-coding 537-95 chr19 27781670 27782070 + 2 NA Intergenic Intergenic -11561 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 532-176 chr3 186724572 186724938 + 2 NA intron (NM_001102416, intron 3 of 9) AluSx|SINE|Alu 7396 NM_001102416 3827 Hs.77741 NM_000893 ENSG00000113889 KNG1 BDK|BK|HMWK|KNG kininogen 1 protein-coding 284-221 chr2 210776994 210777201 + 2 NA Intergenic Intergenic 159526 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 494-267 chr7 54454995 54455345 + 2 NA Intergenic MER9a1|LTR|ERVK -87155 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 218-290 chr6 98431881 98432044 + 2 NA Intergenic L2|LINE|L2 399738 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 539-220 chrX 55313931 55314344 + 2 NA Intergenic L1PB1|LINE|L1 34049 NR_130179 100421746 Hs.662612 NR_130179 ENSG00000232765 LOC100421746 - PAGE family member 5 pseudogene pseudo 251-188 chr2 160961774 160961917 + 2 NA Intergenic L1MEd|LINE|L1 -175110 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 659-51 chr2 7830443 7830875 + 2 NA Intergenic L2b|LINE|L2 68996 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 356-445 chr7 31458348 31458586 + 2 NA Intergenic MER74A|LTR|ERVL -55604 NM_001257967 223075 Hs.224269 NM_194300 ENSG00000180347 ITPRID1 CCDC129 ITPR interacting domain containing 1 protein-coding 509-227 chr6 161663390 161663742 + 2 NA intron (NM_004562, intron 7 of 11) MER46C|DNA|TcMar-Tigger 192589 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 305-20 chr1 90768834 90769025 + 2 NA Intergenic Intergenic -51627 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 201-67 chr12 119483871 119484006 + 2 NA intron (NM_178499, intron 4 of 13) intron (NM_178499, intron 4 of 13) -109836 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 327-40 chr10 31467590 31467784 + 2 NA intron (NM_001323678, intron 2 of 6) L1PB4|LINE|L1 -67932 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 510-260 chr7 53840294 53840596 + 2 NA Intergenic L1MB2|LINE|L1 -28514 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 501-58 chr12 128153331 128153819 + 2 NA Intergenic Intergenic 35358 NR_104648 101927694 Hs.524849 NR_104648 ENSG00000256659 LINC02368 - long intergenic non-protein coding RNA 2368 ncRNA 244-363 chr8 75421322 75421512 + 2 NA intron (NM_001330561, intron 1 of 11) intron (NM_001330561, intron 1 of 11) 13768 NM_001330561 3174 Hs.241529 NM_004133 ENSG00000164749 HNF4G NR2A2|NR2A3 hepatocyte nuclear factor 4 gamma protein-coding 284-297 chr4 118203738 118203996 + 2 NA intron (NM_004784, intron 6 of 13) MER57A-int|LTR|ERV1 -74895 NR_034011 100093630 Hs.535762 NR_003584 ENSG00000269893 SNHG8 LINC00060|NCRNA00060 small nucleolar RNA host gene 8 ncRNA 400-371 chr9 119645671 119646012 + 2 NA Intergenic Intergenic -276406 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 224-15 chr1 152096726 152096901 + 2 NA Intergenic Intergenic -7749 NM_001008536 126637 Hs.546477 NM_001008536 ENSG00000182898 TCHHL1 S100A17|THHL1 trichohyalin like 1 protein-coding 427-42 chr12 21953513 21953847 + 2 NA Intergenic L1ME2|LINE|L1 -16986 NM_005691 10060 Hs.732701 NM_005691 ENSG00000069431 ABCC9 ABC37|ATFB12|CANTU|CMD1O|SUR2 ATP binding cassette subfamily C member 9 protein-coding 165-5 chr1 240249006 240249130 + 2 NA intron (NM_020066, intron 6 of 17) L1MA4A|LINE|L1 157185 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 564-138 chr4 49098746 49099144 + 2 NA Intergenic (CATTC)n|Satellite|Satellite 112303 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 365-278 chr4 29272667 29272998 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 58540 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 384-244 chr3 181261881 181262229 + 2 NA intron (NR_075091, intron 3 of 7) L1MA9|LINE|L1 30318 NR_125730 103625684 NR_125730 ENSG00000207357 RNU6-2 U6-2 RNA, U6 small nuclear 2 snRNA 163-127 chr9 31107581 31107718 + 2 NA Intergenic Intergenic 273841 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 238-263 chr4 54868877 54869031 + 2 NA Intergenic Intergenic 211026 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 617-64 chr2 116468030 116468482 + 2 NA Intergenic LTR57-int|LTR|ERVL 1124441 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 315-213 chr19 52287685 52287890 + 2 NA intron (NM_001010851, intron 3 of 3) L1M3|LINE|L1 5990 NR_030373 693228 NR_030373 ENSG00000208002 MIR643 MIRN643|hsa-mir-643|mir-643 microRNA 643 ncRNA 250-194 chr2 43680259 43680489 + 2 NA intron (NM_172069, intron 3 of 29) L1MA5|LINE|L1 -3945 NM_001101330 728819 NM_001101330 ENSG00000223658 C1GALT1C1L - C1GALT1 specific chaperone 1 like protein-coding 371-405 chr8 142395270 142395622 + 2 NA intron (NM_001366903, intron 1 of 9) intron (NM_001366903, intron 1 of 9) 7736 NM_001366904 203062 Hs.370931 NM_145003 ENSG00000171045 TSNARE1 - t-SNARE domain containing 1 protein-coding 283-204 chr18 73218883 73219136 + 2 NA intron (NR_034133, intron 2 of 5) intron (NR_034133, intron 2 of 5) 45489 NR_034133 400655 Hs.579378 NR_034133 ENSG00000263711 LOC400655 - uncharacterized LOC400655 ncRNA 349-60 chr10 57034294 57034619 + 2 NA Intergenic Intergenic 270103 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 338-55 chr10 43914642 43914936 + 2 NA TTS (NR_136148) TTS (NR_136148) 2387 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 292-272 chr3 412784 412993 + 2 NA Intergenic L2a|LINE|L2 -27093 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 298-265 chr21 15046390 15046600 + 2 NA intron (NM_003489, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 18505 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 234-216 chr20 53795255 53795444 + 2 NA Intergenic AluJr4|SINE|Alu 80360 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 377-197 chr2 40720939 40721258 + 2 NA Intergenic Intergenic -208663 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 371-253 chr3 118502380 118502659 + 2 NA Intergenic L2c|LINE|L2 -139249 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 405-143 chr2 83360926 83361162 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -161770 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 482-182 chr4 47423393 47423663 + 2 NA intron (NM_000812, intron 8 of 8) L2a|LINE|L2 40174 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 348-218 chr2 30780024 30780244 + 2 NA intron (NM_144575, intron 2 of 22) intron (NM_144575, intron 2 of 22) 27312 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 224-324 chr8 83701834 83702051 + 2 NA Intergenic Intergenic 298184 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 694-58 chr19 22691391 22691862 + 2 NA Intergenic L1MA8|LINE|L1 57302 NM_020855 57615 Hs.232108 NM_020855 ENSG00000229676 ZNF492 ZNF115 zinc finger protein 492 protein-coding 454-172 chr2 125324919 125325242 + 2 NA Intergenic Intergenic 792905 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 244-138 chr18 78115938 78116120 + 2 NA Intergenic Intergenic -122302 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 757-7 chr10 52245399 52246076 + 2 NA intron (NM_001098512, intron 9 of 17) intron (NM_001098512, intron 9 of 17) 68391 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 408-163 chr2 126397778 126398176 + 2 NA Intergenic L1PB1|LINE|L1 -257958 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 407-178 chr22 28984956 28985218 + 2 NA intron (NM_032173, intron 1 of 8) intron (NM_032173, intron 1 of 8) 46389 NR_046851 100874123 Hs.674708 NR_046851 ENSG00000177993 ZNRF3-AS1 - ZNRF3 antisense RNA 1 ncRNA 334-122 chr12 128202628 128202822 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -64678 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 281-457 chr9 77472397 77472629 + 2 NA intron (NR_121184, intron 2 of 4) L1MB7|LINE|L1 24864 NR_121184 101927422 Hs.434324 NR_121184 ENSG00000231373 GNA14-AS1 - GNA14 antisense RNA 1 ncRNA 515-54 chr12 34499704 34500054 + 2 NA Intergenic ALR/Alpha|Satellite|centr 477383 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 338-441 chr5 83831334 83831573 + 2 NA Intergenic Intergenic -110598 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 284-7 chr1 76427984 76428206 + 2 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 351172 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 225-36 chr10 58551587 58551727 + 2 NA intron (NM_001080512, intron 1 of 20) L1MA8|LINE|L1 38785 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 315-114 chr13 21769945 21770215 + 2 NA Intergenic HAL1ME|LINE|L1 99007 NM_002010 2254 Hs.111 NM_002010 ENSG00000102678 FGF9 FGF-9|GAF|HBFG-9|HBGF-9|SYNS3 fibroblast growth factor 9 protein-coding 325-294 chr2 213964142 213964363 + 2 NA intron (NR_047660, intron 11 of 14) L1M4b|LINE|L1 206185 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 447-103 chr18 41189501 41189833 + 2 NA Intergenic AluJr|SINE|Alu 331010 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 349-226 chr19 28954291 28954482 + 2 NA Intergenic HAL1ME|LINE|L1 -10745 NR_027318 148145 Hs.112651 NR_027318 ENSG00000267339 LINC00906 - long intergenic non-protein coding RNA 906 ncRNA 332-365 chr4 24120374 24120619 + 2 NA intron (NR_148982, intron 1 of 13) MIR|SINE|MIR -230449 NM_001354828 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 300-446 chr8 3654243 3654428 + 2 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -925884 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 375-128 chr14 71915936 71916253 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -16077 NM_001370270 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 181-66 chr2 79448214 79448382 + 2 NA Intergenic Intergenic 52546 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 322-254 chr2 98238650 98238922 + 2 NA intron (NM_001345864, intron 13 of 21) intron (NM_001345864, intron 13 of 21) 89253 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 235-313 chr6 108482190 108482386 + 2 NA intron (NM_001323005, intron 10 of 11) Charlie1a|DNA|hAT-Charlie -77537 NM_201559 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 191-134 chr3 49441111 49441239 + 2 NA Intergenic L1M3|LINE|L1 -11851 NM_032316 84276 Hs.191460 NM_032316 ENSG00000145029 NICN1 - nicolin 1 protein-coding 380-237 chr22 34930619 34930964 + 2 NA intron (NR_138042, intron 1 of 4) intron (NR_138042, intron 1 of 4) 67125 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 337-104 chr12 4546006 4546198 + 2 NA intron (NM_001130862, intron 4 of 9) intron (NM_001130862, intron 4 of 9) 7212 NM_006479 10635 Hs.730696 NM_006479 ENSG00000111247 RAD51AP1 PIR51 RAD51 associated protein 1 protein-coding 424-18 chr10 4364599 4364961 + 2 NA Intergenic Intergenic -19466 NR_108055 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 267-249 chr3 30472573 30472748 + 2 NA Intergenic Intergenic -46208 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 225-25 chr10 25285338 25285502 + 2 NA intron (NM_020752, intron 2 of 10) MLT2B3|LTR|ERVL -109144 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 292-80 chr11 81144575 81144817 + 2 NA Intergenic Intergenic -381893 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 347-266 chr20 39321613 39321911 + 2 NA Intergenic Tigger5|DNA|TcMar-Tigger -97014 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 307-160 chr15 65242608 65242843 + 2 NA Intergenic AluSx1|SINE|Alu -31252 NM_003613 8483 Hs.442180 NM_003613 ENSG00000138615 CILP CILP-1|HsT18872 cartilage intermediate layer protein protein-coding 143-31 chr16 34586981 34587121 + 2 NA Intergenic Intergenic -205571 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 313-81 chr11 57106359 57106564 + 2 NA Intergenic L2a|LINE|L2 68927 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 380-413 chr8 137041397 137041596 + 2 NA Intergenic Intergenic 372092 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 209-210 chr3 161721292 161721459 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 224567 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 271-33 chr1 233052356 233052577 + 2 NA intron (NM_014801, intron 25 of 33) intron (NM_014801, intron 25 of 33) 101624 NR_138027 84284 Hs.642715 NM_032324 ENSG00000135778 NTPCR C1orf57|HCR-NTPase|THEP1 nucleoside-triphosphatase, cancer-related protein-coding 290-484 chr9 73050443 73050660 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger -97498 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 587 chr1 22742270 22742813 + 2 NA intron (NM_004442, intron 1 of 15) AluJr|SINE|Alu 23024 NR_039832 100616391 NR_039832 ENSG00000265422 MIR4684 - microRNA 4684 ncRNA 349-116 chr12 16311605 16311883 + 2 NA Intergenic Intergenic -34059 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 659-135 chrX 97532000 97532434 + 2 NA intron (NR_125391, intron 2 of 2) intron (NR_125391, intron 2 of 2) 32318 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 318-524 chr7 115723448 115723681 + 2 NA Intergenic Intergenic -142123 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 360-458 chr8 76814409 76814610 + 2 NA intron (NM_024721, intron 4 of 10) Charlie4z|DNA|hAT-Charlie -131234 NR_024360 100192378 Hs.596420 NR_024360 ENSG00000253661 ZFHX4-AS1 - ZFHX4 antisense RNA 1 ncRNA 427-51 chr12 62180241 62180522 + 2 NA intron (NM_178539, intron 1 of 4) intron (NM_178539, intron 1 of 4) 12458 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 282-47 chr10 66864948 66865094 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -61015 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 502-94 chr14 84766596 84766962 + 2 NA Intergenic L1MB3|LINE|L1 -505153 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 277-381 chr7 66266317 66266568 + 2 NA intron (NM_003596, intron 2 of 5) L1ME3|LINE|L1 61108 NM_003596 8460 Hs.421194 NM_003596 ENSG00000169902 TPST1 TANGO13A tyrosylprotein sulfotransferase 1 protein-coding 239-424 chr8 130814310 130814516 + 2 NA intron (NM_001115, intron 13 of 17) LTR27|LTR|ERV1 226496 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 491-25 chr10 130099338 130099665 + 2 NA intron (NM_001355042, intron 1 of 3) AluSz|SINE|Alu -6508 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 373-437 chrUn_GL000216v2 65447 65759 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 317-459 chr7 86784503 86784691 + 2 NA intron (NM_001363522, intron 2 of 4) intron (NM_001363522, intron 2 of 4) 140683 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 356-495 chr8 139074418 139074628 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -160482 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 536-246 chr9 1236823 1237205 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 185527 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 248-148 chr17 12006696 12006834 + 2 NA Intergenic Intergenic -9255 NM_001303282 7566 Hs.370473 NM_144680 ENSG00000154957 ZNF18 HDSG1|KOX11|ZKSCAN6|ZNF535|ZSCAN38|Zfp535 zinc finger protein 18 protein-coding 492-154 chr20 40796382 40796756 + 2 NA Intergenic MER81|DNA|hAT-Blackjack -81946 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 178-127 chr7 11332924 11333016 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 359098 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 268-145 chr16 60996502 60996700 + 2 NA Intergenic Intergenic 59165 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 301-408 chr6 160388980 160389228 + 2 NA intron (NM_021977, intron 1 of 10) intron (NM_021977, intron 1 of 10) 40726 NM_021977 6581 Hs.567337 NM_021977 ENSG00000146477 SLC22A3 EMT|EMTH|OCT3 solute carrier family 22 member 3 protein-coding 455-125 chr2 82983812 82984177 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 127191 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 300-402 chr6 129957506 129957708 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -60762 NM_032438 84456 Hs.658051 NM_032438 ENSG00000198945 L3MBTL3 MBT-1|MBT1 L3MBTL histone methyl-lysine binding protein 3 protein-coding 307-186 chr17 53792893 53793103 + 2 NA Intergenic LTR2752|LTR|ERV1 -29929 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 335-208 chr18 8837434 8837764 + 2 NA Intergenic LTR28C|LTR|ERV1 120218 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 248-410 chr8 115002960 115003139 + 2 NA Intergenic Intergenic 664964 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 243-402 chr6 146463400 146463554 + 2 NA Intergenic MIR|SINE|MIR -80356 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 207-318 chrM 1251 1424 + 2 NA promoter-TSS (NR_137295) promoter-TSS (NR_137295) -334 NR_137295 358-353 chr4 175214402 175214665 + 2 NA Intergenic LTR25-int|LTR|ERV1 296175 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 286-43 chr10 78415055 78415311 + 2 NA Intergenic Intergenic 147841 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 335-498 chr7 41231438 41231613 + 2 NA Intergenic AluSc5|SINE|Alu 129921 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 270-416 chr8 134223323 134223572 + 2 NA Intergenic Intergenic 336951 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 291-245 chr2 196039276 196039500 + 2 NA intron (NM_018897, intron 5 of 64) L1MA5|LINE|L1 29449 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 411-52 chr11 25557484 25557858 + 2 NA Intergenic Intergenic -631452 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 500-89 chr15 25114121 25114440 + 2 NA intron (NR_146177, intron 58 of 147) L1M4a1|LINE|L1 -2265 NR_023915 3653 Hs.555970 NR_023915 IPW NCRNA00002 imprinted in Prader-Willi syndrome ncRNA 277-94 chr12 118972965 118973210 + 2 NA Intergenic L1MC5|LINE|L1 -8454 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 385-248 chr3 99265925 99266217 + 2 NA Intergenic L1ME3Cz|LINE|L1 -364376 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 541-251 chr8 139440728 139441064 + 2 NA Intergenic AluSx|SINE|Alu 262227 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 299-151 chr15 78216379 78216641 + 2 NA intron (NM_015162, intron 1 of 13) intron (NM_015162, intron 1 of 13) 18055 NM_001199377 23205 Hs.655760 NM_015162 ENSG00000103740 ACSBG1 BG|BG1|BGM|GR-LACS|LPD acyl-CoA synthetase bubblegum family member 1 protein-coding 254-8 chr1 69021991 69022198 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -33804 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 429-4 chr1 70973938 70974203 + 2 NA intron (NM_198719, intron 3 of 3) intron (NM_198719, intron 3 of 3) -72436 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 314-75 chr10 88290417 88290584 + 2 NA intron (NM_001031709, intron 6 of 6) Kanga1a|DNA|TcMar-Tc2 292818 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 321-401 chr4 377434 377676 + 2 NA 3' UTR (NM_001348277, exon 2 of 2) 3' UTR (NM_001348277, exon 2 of 2) 27398 NR_030297 693156 NR_030297 ENSG00000207642 MIR571 MIRN571|hsa-mir-571 microRNA 571 ncRNA 409-221 chr4 73784977 73785253 + 2 NA Intergenic L1MA5|LINE|L1 44546 NM_000584 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 239-45 chr10 93876851 93877022 + 2 NA Intergenic Intergenic -17042 NM_001345993 159371 Hs.632085 NM_153226 ENSG00000176273 SLC35G1 C10orf60|POST|TMEM20 solute carrier family 35 member G1 protein-coding 437-127 chr2 31181199 31181523 + 2 NA intron (NM_001145122, intron 16 of 21) L3|LINE|CR1 36154 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 186-26 chr11 115027606 115027741 + 2 NA Intergenic Intergenic -305904 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 427-220 chr6 283142 283530 + 2 NA Intergenic Intergenic -8721 NR_104474 56940 Hs.29106 NM_020185 ENSG00000112679 DUSP22 JKAP|JSP-1|JSP1|LMW-DSP2|LMWDSP2|MKP-x|MKPX|VHX dual specificity phosphatase 22 protein-coding 283-451 chr8 138996720 138996960 + 2 NA Intergenic MIR|SINE|MIR -82799 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 336-298 chr2 176434791 176434986 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 165446 NM_001319098 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 212-132 chr19 9343757 9343929 + 2 NA TTS (NM_032497) TTS (NM_032497) 19148 NM_001202425 100529215 Hs.728944 NM_001172650 ENSG00000270011 ZNF559-ZNF177 - ZNF559-ZNF177 readthrough protein-coding 538-231 chr8 86122515 86122903 + 2 NA intron (NM_152565, intron 2 of 7) intron (NM_152565, intron 2 of 7) 23799 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 303-123 chr14 65225297 65225490 + 2 NA Intergenic Intergenic -3046 NR_103769 100128233 Hs.497323 NR_103769 ENSG00000255002 LINC02324 - long intergenic non-protein coding RNA 2324 ncRNA 368-475 chr9 9374080 9374289 + 2 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) -425208 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 365-179 chr2 16829519 16829837 + 2 NA Intergenic MER53|DNA|hAT -163844 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 370-442 chr8 100583614 100583857 + 2 NA intron (NM_152628, intron 12 of 13) intron (NM_152628, intron 12 of 13) -23976 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 521-162 chr3 74105322 74105676 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR 296255 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 273-327 chr4 73925203 73925448 + 2 NA Intergenic L1MEd|LINE|L1 55932 NR_046035 2919 Hs.789 NM_001511 ENSG00000163739 CXCL1 FSP|GRO1|GROa|MGSA|MGSA-a|NAP-3|SCYB1 C-X-C motif chemokine ligand 1 protein-coding 190-104 chr20 42023469 42023650 + 2 NA Intergenic Intergenic -405182 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 615-27 chr12 92311673 92312188 + 2 NA Intergenic MIR|SINE|MIR -109601 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 247-318 chr5 24997770 24997961 + 2 NA Intergenic Intergenic -157282 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 253-143 chr15 70725949 70726111 + 2 NA intron (NM_018003, intron 1 of 18) MamRep605|LTR?|LTR? -23748 NM_001008224 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 291-118 chr14 37066494 37066717 + 2 NA intron (NM_001171170, intron 1 of 10) L1MC4|LINE|L1 -105421 NR_033240 100129794 Hs.601579 NR_033240 ENSG00000258708 SLC25A21-AS1 - SLC25A21 antisense RNA 1 ncRNA 359-260 chr2 203318079 203318287 + 2 NA Intergenic L1MC5a|LINE|L1 -10056 NM_001282932 10152 Hs.471156 NM_005759 ENSG00000138443 ABI2 ABI-2|ABI2B|AIP-1|AIP1|AblBP3|SSH3BP2|argBP1|argBPIA|argBPIB abl interactor 2 protein-coding 298-295 chr3 73418492 73418659 + 2 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) 15420 NM_001303142 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 352-124 chr13 57383533 57383797 + 2 NA Intergenic Intergenic 216468 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 718-15 chr11 80795087 80795515 + 2 NA Intergenic Intergenic -32498 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 409-49 chr12 37971064 37971295 + 2 NA Intergenic ALR/Alpha|Satellite|centr -345595 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 235-310 chr6 72341719 72341917 + 2 NA intron (NM_001350433, intron 21 of 25) intron (NM_001350433, intron 21 of 25) -24928 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 379-88 chr14 42891613 42891896 + 2 NA Intergenic Intergenic 1284898 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 301-404 chr6 143116660 143116920 + 2 NA intron (NM_001366344, intron 2 of 6) LTR32|LTR|ERVL -9349 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 560-193 chr9 29092805 29093251 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 119271 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 353-500 chr7 122520780 122521095 + 2 NA intron (NM_001167940, intron 8 of 29) intron (NM_001167940, intron 8 of 29) 178180 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 593-48 chr15 27581138 27581573 + 2 NA Intergenic Intergenic -420036 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 190-8 chr1 163782502 163782613 + 2 NA Intergenic L1MB8|LINE|L1 -359366 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 295-460 chr8 10449578 10449846 + 2 NA Intergenic L1MEg|LINE|L1 -24853 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 252-220 chr2 185827011 185827256 + 2 NA intron (NM_173651, intron 20 of 22) intron (NM_173651, intron 20 of 22) -26982 NR_144454 107985781 Hs.397593 NR_144453 ENSG00000231646 FSIP2-AS1 - FSIP2 antisense RNA 1 ncRNA 337-432 chr5 16452198 16452444 + 2 NA intron (NM_033414, intron 5 of 5) intron (NM_033414, intron 5 of 5) -11219 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 306-325 chr3 114233754 114233975 + 2 NA TTS (NM_007136) TTS (NM_007136) 3714 NM_007136 7634 Hs.271079 NM_007136 ENSG00000174255 ZNF80 pT17 zinc finger protein 80 protein-coding 214-248 chr4 155337285 155337474 + 2 NA Intergenic Intergenic -16837 NR_125937 102724776 Hs.61271 NR_125937 ENSG00000250910 LOC102724776 - uncharacterized LOC102724776 ncRNA 318-336 chr21 45935893 45936121 + 2 NA intron (NR_145492, intron 15 of 16) intron (NR_145492, intron 15 of 16) -36963 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 167-61 chr2 125092602 125092711 + 2 NA Intergenic Intergenic 1025329 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 516-72 chr14 76578236 76578606 + 2 NA Intergenic Intergenic -183047 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 419-137 chr2 51277848 51278208 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 245427 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 293-466 chr8 141053274 141053552 + 2 NA Intergenic L1ME4a|LINE|L1 -51334 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 314-480 chr5 145102036 145102268 + 2 NA Intergenic Intergenic 733190 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 337-391 chr4 43204339 43204630 + 2 NA Intergenic Intergenic 288059 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 487-4 chr1 9037520 9037898 + 2 NA exon (NM_001328620, exon 12 of 12) exon (NM_001328620, exon 12 of 12) -11364 NM_207420 155184 Hs.531239 NM_207420 ENSG00000197241 SLC2A7 GLUT-7|GLUT7 solute carrier family 2 member 7 protein-coding 326-464 chr6 122020307 122020485 + 2 NA Intergenic Intergenic -379155 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 220-380 chr8 131920455 131920611 + 2 NA intron (NM_001323557, intron 1 of 22) intron (NM_001323557, intron 1 of 22) 3760 NM_001323556 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 208-73 chr14 53969177 53969350 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -12372 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 567-76 chr18 55804042 55804580 + 2 NA Intergenic L1MEc|LINE|L1 -22586 NR_145452 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 212-103 chr14 86703089 86703243 + 2 NA Intergenic MIR|SINE|MIR -202612 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 286-89 chr12 38922430 38922583 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -16915 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 255-248 chr3 83279 83468 + 2 NA Intergenic Intergenic 71622 NR_110824 102723448 Hs.543290 NR_110824 LINC01986 - long intergenic non-protein coding RNA 1986 ncRNA 648-83 chr21 34165086 34165503 + 2 NA Intergenic MER61-int|LTR|ERV1 -15383 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 289-127 chr13 79823287 79823569 + 2 NA Intergenic L1PA14|LINE|L1 19042 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 446-205 chr3 178691753 178692066 + 2 NA intron (NM_001278911, intron 1 of 4) L1PA13|LINE|L1 133059 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 259-416 chr8 130977927 130978171 + 2 NA intron (NM_001115, intron 2 of 17) L2b|LINE|L2 62860 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 249-471 chrX 102796358 102796486 + 2 NA intron (NR_038988, intron 2 of 7) intron (NR_038988, intron 2 of 7) 27269 NR_146593 100287765 Hs.556850 NR_038988 LINC00630 - long intergenic non-protein coding RNA 630 ncRNA 458-243 chr7 115530156 115530576 + 2 NA Intergenic Intergenic 51075 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 304-408 chr5 24772112 24772276 + 2 NA Intergenic MER92B|LTR|ERV1 68389 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 260-242 chr20 42056225 42056450 + 2 NA Intergenic Intergenic -437960 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 357-407 chr7 3199842 3200045 + 2 NA Intergenic L1MDa|LINE|L1 -41370 NR_126024 100129603 Hs.652997 NR_126024 LOC100129603 - uncharacterized LOC100129603 ncRNA 392-35 chr10_GL383545v1_alt 65304 65552 + 2 NA intron (NR_138082, intron 1 of 1) intron (NR_138082, intron 1 of 1) 62410 NR_138082 101060171 Hs.568842 NR_138082 ARMC4P1 - armadillo repeat containing 4 pseudogene 1 pseudo 184-181 chr9 75655487 75655626 + 2 NA Intergenic Intergenic -235088 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 574-183 chr8 89122896 89123406 + 2 NA Intergenic L2c|LINE|L2 634560 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 380-101 chr12 98507565 98507857 + 2 NA Intergenic Intergenic -3856 NR_038383 643770 Hs.129589 NR_038383 ENSG00000245017 LINC02453 - long intergenic non-protein coding RNA 2453 ncRNA 275-66 chr11 58102509 58102729 + 2 NA intron (NM_001005212, intron 2 of 2) L1M2|LINE|L1 16825 NM_001005211 219954 Hs.632122 NM_001005211 ENSG00000172377 OR9I1 OR11-228 olfactory receptor family 9 subfamily I member 1 protein-coding 520-292 chr8 72092948 72093331 + 2 NA Intergenic Intergenic -17555 NM_007332 8989 Hs.716816 NM_007332 ENSG00000104321 TRPA1 ANKTM1|FEPS|FEPS1 transient receptor potential cation channel subfamily A member 1 protein-coding 516-250 chr8 87722667 87723018 + 2 NA Intergenic AluY|SINE|Alu 151173 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 243-266 chr22 33258580 33258749 + 2 NA Intergenic MER41C|LTR|ERV1 150135 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 658-77 chr3 26965419 26965900 + 2 NA Intergenic MamRep1151|LTR?|LTR? 250864 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 380-62 chr11 23569587 23569832 + 2 NA Intergenic MER73|LTR|ERVL -150519 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 236-373 chr8 140334742 140334935 + 2 NA intron (NM_001160372, intron 9 of 22) L2c|LINE|L2 122906 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 461-221 chr5 124405789 124406239 + 2 NA intron (NR_125774, intron 3 of 5) intron (NR_125774, intron 3 of 5) 32506 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 175-170 chr8 113146579 113146705 + 2 NA intron (NM_001363185, intron 4 of 66) intron (NM_001363185, intron 4 of 66) 230510 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 314-283 chr2 71911819 71911996 + 2 NA Intergenic L1MEc|LINE|L1 235955 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 316-533 chr8 21261259 21261484 + 2 NA Intergenic L1ME1|LINE|L1 -36868 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 209-128 chr17 76163816 76163979 + 2 NA intron (NM_052916, intron 8 of 18) intron (NM_052916, intron 8 of 18) -22652 NM_001454 2302 Hs.651204 NM_001454 ENSG00000129654 FOXJ1 FKHL13|HFH-4|HFH4 forkhead box J1 protein-coding 296-450 chr7 141928787 141928939 + 2 NA 3' UTR (NM_001301167, exon 6 of 6) 3' UTR (NM_001301167, exon 6 of 6) 9987 NM_001001656 130075 Hs.690171 NM_001001656 ENSG00000258083 OR9A4 - olfactory receptor family 9 subfamily A member 4 protein-coding 606-80 chr2 39948169 39948604 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 30752 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 379-327 chr7 113285420 113285778 + 2 NA Intergenic LTR27D|LTR|ERV1 -167017 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 437-32 chr10 115147381 115147749 + 2 NA intron (NM_001276282, intron 5 of 7) L1MA4A|LINE|L1 54200 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 134-37 chr17 32301806 32301881 + 2 NA intron (NM_001363835, intron 6 of 7) intron (NM_001363835, intron 6 of 7) 35667 NM_001363834 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 267-7 chr1 62786049 62786212 + 2 NA intron (NM_032852, intron 1 of 10) MIRc|SINE|MIR 1998 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 288-154 chr18 5227371 5227644 + 2 NA Intergenic L1PB1|LINE|L1 10522 NR_026849 147525 Hs.657197 NM_152471 LINC00526 C18orf18|HsT959 long intergenic non-protein coding RNA 526 ncRNA 494-305 chr9 25612832 25613154 + 2 NA Intergenic Intergenic 65865 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 304-165 chr15 69924056 69924356 + 2 NA Intergenic L1MEd|LINE|L1 88972 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 258-112 chr13 93956406 93956595 + 2 NA intron (NM_005708, intron 3 of 8) intron (NM_005708, intron 3 of 8) -98027 NR_046536 100873973 Hs.615939 NR_046536 GPC6-AS2 - GPC6 antisense RNA 2 ncRNA 329-380 chr3 111229138 111229379 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 157442 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 548-50 chr12 33216891 33217352 + 2 NA Intergenic L1PA13|LINE|L1 222698 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 490-181 chr3 77864098 77864399 + 2 NA Intergenic Intergenic 184715 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 134-40 chr18 3939995 3940079 + 2 NA intron (NM_001242761, intron 3 of 11) MLT1F|LTR|ERVL-MaLR -22316 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 575-109 chr21 44690223 44690558 + 2 NA intron (NM_144991, intron 1 of 11) HAL1ME|LINE|L1 -6782 NM_198699 386685 Hs.297526 NM_198699 ENSG00000189169 KRTAP10-12 KAP10.12|KRTAP18-12|KRTAP18.12 keratin associated protein 10-12 protein-coding 400-50 chr11 30846213 30846582 + 2 NA Intergenic MER34B|LTR|ERV1 146289 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 332-492 chr7 77209344 77209558 + 2 NA intron (NM_020879, intron 2 of 18) MSTA-int|LTR|ERVL-MaLR -9632 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 248-226 chr21 15196958 15197156 + 2 NA Intergenic Intergenic -132057 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 254-347 chr6 56245518 56245688 + 2 NA intron (NM_001318751, intron 1 of 30) MIRb|SINE|MIR 1977 NR_134849 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 155-62 chr22 28456398 28456518 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -3411 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 459-182 chr3 29976426 29976817 + 2 NA intron (NM_001003792, intron 11 of 13) intron (NM_001003792, intron 11 of 13) -42465 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 341-208 chr18 30238977 30239234 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -59805 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 306-65 chr10 106903709 106903878 + 2 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 260913 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 192-73 chr15 67096096 67096259 + 2 NA intron (NM_005902, intron 1 of 8) MER45B|DNA|hAT-Tip100 -29539 NM_001145102 4088 Hs.727986 NM_005902 ENSG00000166949 SMAD3 HSPC193|HsT17436|JV15-2|LDS1C|LDS3|MADH3 SMAD family member 3 protein-coding 309-53 chr10 71988175 71988343 + 2 NA intron (NM_004273, intron 1 of 2) intron (NM_004273, intron 1 of 2) 23864 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 354-158 chr15 86691414 86691706 + 2 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -241320 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 246-325 chr5 46238061 46238209 + 2 NA Intergenic ALR/Alpha|Satellite|centr -541755 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 353-300 chr21 34164708 34165005 + 2 NA Intergenic LTR10C|LTR|ERV1 -15821 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 323-265 chr2 111648574 111648874 + 2 NA Intergenic L1MB4|LINE|L1 122410 NR_039928 100616370 NR_039928 ENSG00000264793 MIR4771-1 - microRNA 4771-1 ncRNA 308-414 chr6 23018358 23018605 + 2 NA Intergenic Intergenic -300557 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 210-55 chr12 18860960 18861140 + 2 NA Intergenic L1ME3Cz|LINE|L1 122931 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 359-495 chr8 134231304 134231486 + 2 NA Intergenic Intergenic 344899 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 143-77 chr7 47824205 47824341 + 2 NA intron (NM_138295, intron 45 of 56) L1MC5|LINE|L1 28982 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 214-142 chr18 33355790 33355977 + 2 NA intron (NM_001308126, intron 7 of 23) L1MB5|LINE|L1 84688 NM_001371121 335-169 chr15 27523712 27524037 + 2 NA intron (NM_033223, intron 7 of 9) L1MDa|LINE|L1 -362555 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 360-238 chr2 146022863 146023139 + 2 NA Intergenic Intergenic -564056 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 542-224 chr8 104751075 104751612 + 2 NA Intergenic Intergenic -162319 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 468-345 chrX 85024424 85024708 + 2 NA intron (NM_198450, intron 1 of 8) intron (NM_198450, intron 1 of 8) 20689 NM_198450 139322 Hs.512181 NM_198450 ENSG00000155008 APOOL CXorf33|FAM121A|MICOS27|Mic27|UNQ8193 apolipoprotein O like protein-coding 363-109 chr12 113011442 113011734 + 2 NA 3' UTR (NM_016817, exon 11 of 11) 3' UTR (NM_016817, exon 11 of 11) 33069 NM_001032731 4939 Hs.414332 NM_002535 ENSG00000111335 OAS2 - 2'-5'-oligoadenylate synthetase 2 protein-coding 305-549 chr8 126211136 126211334 + 2 NA Intergenic L1PA15|LINE|L1 -114260 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 509-190 chr5 57095710 57096171 + 2 NA Intergenic L1PB1|LINE|L1 -78008 NM_001203246 65056 Hs.444279 NM_022913 ENSG00000062194 GPBP1 GPBP|SSH6|VASCULIN GC-rich promoter binding protein 1 protein-coding 373-13 chr1 77773788 77773992 + 2 NA Intergenic Intergenic -5734 NM_198549 374986 Hs.437755 NM_198549 ENSG00000180488 MIGA1 FAM73A mitoguardin 1 protein-coding 222-262 chr4 42097903 42098068 + 2 NA Intergenic Intergenic 54670 NM_001159547 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 418-106 chr19 55752668 55752991 + 2 NA Intergenic L1MA6|LINE|L1 -6312 NM_001145014 342931 Hs.631553 NM_001145014 ENSG00000223638 RFPL4A RFPL4|RNF210 ret finger protein like 4A protein-coding 423-77 chr14 62738290 62738646 + 2 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 306990 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 245-304 chr6 66147827 66147973 + 2 NA Intergenic Intergenic 360021 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 210-119 chr2 22924362 22924514 + 2 NA Intergenic MIR|SINE|MIR 387959 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 242-163 chr2 28304290 28304484 + 2 NA intron (NM_001261840, intron 11 of 11) (TATA)n|Simple_repeat|Simple_repeat 6072 NR_038319 100505716 Hs.679092 NR_038319 ENSG00000223522 LOC100505716 - uncharacterized LOC100505716 ncRNA 333-24 chr1 101448285 101448463 + 2 NA Intergenic MER21-int|LTR|ERVL 124537 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 317-307 chr3 84829616 84829817 + 2 NA intron (NR_033860, intron 8 of 20) MSTD|LTR|ERVL-MaLR 39859 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 289-294 chr3 32858626 32858824 + 2 NA intron (NM_001039111, intron 1 of 3) intron (NM_001039111, intron 1 of 3) 40728 NM_001039111 131405 Hs.113170 NM_001039111 ENSG00000206557 TRIM71 LIN-41|LIN41 tripartite motif containing 71 protein-coding 280-117 chr14 50349001 50349160 + 2 NA intron (NM_001282236, intron 3 of 8) HAL1|LINE|L1 36756 NM_001370605 27109 Hs.438489 NM_015684 ENSG00000125375 DMAC2L ATP5S|ATPW|FB|HSU79253 distal membrane arm assembly complex 2 like protein-coding 271-203 chr2 102608697 102608925 + 2 NA Intergenic Intergenic -10742 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 164-18 chr11 25941604 25941754 + 2 NA Intergenic Intergenic -247444 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 248-59 chr11 12612053 12612264 + 2 NA Intergenic L1PB1|LINE|L1 -62263 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 324-452 chr6 23409016 23409236 + 2 NA Intergenic Intergenic -691202 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 424-195 chr4 82561976 82562342 + 2 NA promoter-TSS (NM_001353455) promoter-TSS (NM_001353455) 94 NM_001353454 441027 Hs.507676 NM_001080506 ENSG00000249242 TMEM150C TTN3 transmembrane protein 150C protein-coding 231-244 chr4 15912975 15913156 + 2 NA Intergenic Intergenic 25675 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 312-51 chr10 76505651 76505893 + 2 NA intron (NM_001305581, intron 6 of 6) L1PA16|LINE|L1 -382272 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 207-161 chr20 40599219 40599376 + 2 NA Intergenic L1ME1|LINE|L1 89939 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 682-95 chr7 29906959 29907531 + 2 NA intron (NM_001080529, intron 8 of 8) L1MB3|LINE|L1 82556 NM_014766 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 239-109 chr14 70158505 70158715 + 2 NA intron (NM_033262, intron 2 of 7) intron (NM_033262, intron 2 of 7) -28498 NR_135825 646548 NR_135825 LOC646548 - ADAM metallopeptidase domain 20 pseudogene pseudo 305-48 chr1 238473327 238473577 + 2 NA Intergenic Intergenic 12565 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 197-156 chr4 121206266 121206445 + 2 NA intron (NM_001128843, intron 2 of 12) MIRb|SINE|MIR 10272 NM_001128843 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 249-227 chr2 209532451 209532663 + 2 NA intron (NM_001039538, intron 2 of 14) MIR|SINE|MIR -46779 NM_001363913 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 285-450 chr9 26745990 26746234 + 2 NA Intergenic Intergenic 146690 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 288-266 chr3 80913318 80913475 + 2 NA Intergenic Intergenic -80472 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 360-352 chr5 25675453 25675796 + 2 NA Intergenic Intergenic 484671 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 416-289 chr6 22290211 22290472 + 2 NA exon (NM_000948, exon 4 of 5) exon (NM_000948, exon 4 of 5) 6695 NM_000948 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 238-347 chr7 9060285 9060448 + 2 NA Intergenic L1M3de|LINE|L1 -573904 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 339-544 chr7 113010492 113010777 + 2 NA Intergenic Intergenic -14991 NR_110162 101928036 Hs.120006 NR_110162 ENSG00000234520 HRAT17 - heart tissue-associated transcript 17 ncRNA 242-374 chr7 72168196 72168342 + 2 NA intron (NM_001363460, intron 2 of 5) intron (NM_001363460, intron 2 of 5) 169122 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 530-146 chr2 214117477 214117871 + 2 NA intron (NR_047660, intron 13 of 14) L1M1|LINE|L1 -293380 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 473-289 chr8 142186742 142187168 + 2 NA Intergenic Intergenic 10616 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 316-231 chr18 77184887 77185153 + 2 NA Intergenic Intergenic -52237 NM_001025101 4155 Hs.551713 NM_002385 ENSG00000197971 MBP - myelin basic protein protein-coding 330-128 chr12 106065217 106065438 + 2 NA 3' UTR (NM_014840, exon 7 of 7) 3' UTR (NM_014840, exon 7 of 7) 74706 NM_014840 9891 Hs.524692 NM_014840 ENSG00000074590 NUAK1 ARK5 NUAK family kinase 1 protein-coding 292-327 chr4 160399736 160399987 + 2 NA Intergenic Intergenic -622077 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 260-146 chr15 60056597 60056783 + 2 NA Intergenic Intergenic 52379 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 191-40 chr12 29858485 29858664 + 2 NA Intergenic Intergenic -73815 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 597-128 chr7 91338405 91338808 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 74173 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 292-132 chr14 38492447 38492719 + 2 NA Intergenic L1M3|LINE|L1 -236490 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 265-359 chr7 48576715 48576880 + 2 NA intron (NM_152701, intron 55 of 61) L1MCa|LINE|L1 -347750 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 219-336 chr7 53953368 53953556 + 2 NA Intergenic L1M5|LINE|L1 -141531 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 254-237 chr3 8876239 8876467 + 2 NA TTS (NM_020165) TTS (NM_020165) 87119 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 363-421 chr7 77202320 77202584 + 2 NA intron (NM_020879, intron 2 of 18) intron (NM_020879, intron 2 of 18) -2633 NM_006682 10875 Hs.520989 NM_006682 ENSG00000127951 FGL2 T49|pT49 fibrinogen like 2 protein-coding 251-172 chr2 78116856 78117026 + 2 NA intron (NR_110287, intron 5 of 5) intron (NR_110287, intron 5 of 5) 28211 NR_110287 101927948 Hs.639404 NR_110287 ENSG00000229494 LOC101927948 - uncharacterized LOC101927948 ncRNA 413-174 chr21 20986956 20987306 + 2 NA Intergenic Intergenic -11278 NM_001352594 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 306-435 chr6 66685031 66685195 + 2 NA Intergenic MER57-int|LTR|ERV1 897234 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 442-50 chr12 17435401 17435807 + 2 NA Intergenic L1M3|LINE|L1 153474 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 336-71 chr10 80641829 80642121 + 2 NA intron (NM_207372, intron 6 of 6) intron (NM_207372, intron 6 of 6) -7822 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 277-428 chr8 122343475 122343711 + 2 NA Intergenic Intergenic 225051 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 325-376 chr4 13759964 13760196 + 2 NA intron (NR_121681, intron 2 of 3) intron (NR_121681, intron 2 of 3) 104901 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 311-398 chr5 19281197 19281437 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 604955 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 467-249 chr6 64185320 64185641 + 2 NA intron (NM_001292009, intron 31 of 43) intron (NM_001292009, intron 31 of 43) 378644 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 345-499 chr7 87102487 87102776 + 2 NA Intergenic Intergenic -42977 NM_001142749 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 394-10 chr1 83838104 83838382 + 2 NA intron (NR_119374, intron 2 of 2) intron (NR_119374, intron 2 of 2) 22303 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 242-249 chr3 177983243 177983415 + 2 NA Intergenic L2a|LINE|L2 166464 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 565-138 chr5 20996860 20997313 + 2 NA Intergenic L1PA16|LINE|L1 -381551 NR_147185 105374677 NR_147185 LINC02146 - long intergenic non-protein coding RNA 2146 ncRNA 292-149 chr15 54595902 54596188 + 2 NA intron (NM_001329919, intron 29 of 31) intron (NM_001329919, intron 29 of 31) -460702 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 328-189 chr16 3381286 3381588 + 2 NA TTS (NM_001324341) TTS (NM_001324341) -8769 NM_001190476 100463285 NM_001190476 ENSG00000232196 MTRNR2L4 HN4 MT-RNR2 like 4 protein-coding 295-228 chr2 144916250 144916401 + 2 NA intron (NR_033870, intron 3 of 4) L1MA6|LINE|L1 248358 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 263-252 chr3 29738479 29738710 + 2 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 195562 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 376-283 chr4 65462737 65462945 + 2 NA intron (NM_001281767, intron 5 of 16) MLT1H|LTR|ERVL-MaLR 206647 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 223-370 chr9 103761317 103761479 + 2 NA Intergenic Intergenic -238311 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 509-209 chr5 169232602 169233021 + 2 NA intron (NM_003062, intron 3 of 35) L1ME3B|LINE|L1 30883 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 276-404 chr6 73304716 73304950 + 2 NA intron (NR_027005, intron 2 of 4) intron (NR_027005, intron 2 of 4) 5326 NM_001251874 80759 Hs.433062 NM_030568 ENSG00000135314 KHDC1 C6orf147|C6orf148|Em:AC019205.8|KHDC1L|NDG1|bA257K9.4 KH domain containing 1 protein-coding 329-119 chr12 37919645 37919870 + 2 NA Intergenic ALR/Alpha|Satellite|centr -397017 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 982-19 chr4 22168525 22169374 + 2 NA Intergenic L2b|LINE|L2 170717 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 350-352 chr4 67289666 67289924 + 2 NA Intergenic Intergenic 132205 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 393-310 chr6 112627720 112628037 + 2 NA Intergenic Intergenic 280548 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 874-31 chr8 87604650 87605250 + 2 NA Intergenic AluSc5|SINE|Alu 269065 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 315-372 chr5 35051471 35051644 + 2 NA intron (NM_001204318, intron 6 of 6) intron (NM_001204318, intron 6 of 6) -3608 NM_031900 64902 Hs.34494 NM_031900 ENSG00000113492 AGXT2 AGT2|BAIBA|DAIBAT alanine--glyoxylate aminotransferase 2 protein-coding 264-62 chr10 107710272 107710464 + 2 NA Intergenic Intergenic 358925 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 310-376 chr4 94142674 94142913 + 2 NA intron (NR_125922, intron 5 of 8) L1M2|LINE|L1 64763 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 590-164 chr8 64933024 64933447 + 2 NA Intergenic L1MB7|LINE|L1 -134498 NM_004820 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 387-245 chr4 30386246 30386486 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -334003 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 219-86 chr13 57122385 57122544 + 2 NA Intergenic Intergenic -18454 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 303-140 chr15 39102543 39102729 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -148033 NR_144508 400360 Hs.376109 NM_207445 ENSG00000175746 C15orf54 - chromosome 15 open reading frame 54 (putative) ncRNA 178-18 chr10 36792001 36792105 + 2 NA Intergenic L1MA3|LINE|L1 -333804 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 431-83 chr14 71527783 71528159 + 2 NA intron (NM_001354286, intron 4 of 24) AluSz6|SINE|Alu 40110 NR_027046 145474 Hs.658241 NR_027046 LOC145474 - uncharacterized LOC145474 ncRNA 306-143 chr14 51914373 51914592 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) 4089 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 284-159 chr17 54781135 54781322 + 2 NA Intergenic Intergenic -119463 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 247-398 chr8 57840541 57840767 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 94505 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 497-231 chr5 87677271 87677696 + 2 NA intron (NR_149089, intron 1 of 1) intron (NR_149089, intron 1 of 1) 15441 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 471-116 chr19 23793423 23793700 + 2 NA intron (NR_149351, intron 2 of 4) AluJb|SINE|Alu 30557 NR_149352 388524 Hs.560655 NM_001005472 RPSAP58 RPSA_30_1642 ribosomal protein SA pseudogene 58 protein-coding 434-176 chr3 19747139 19747473 + 2 NA Intergenic L2a|LINE|L2 186911 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 389-247 chr3 148326392 148326620 + 2 NA intron (NR_146712, intron 3 of 4) L1MB3|LINE|L1 45615 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 426-64 chr12 119652610 119652858 + 2 NA Intergenic L1MEf|LINE|L1 -15399 NM_006253 5564 Hs.741184 NM_006253 ENSG00000111725 PRKAB1 AMPK|HAMPKb protein kinase AMP-activated non-catalytic subunit beta 1 protein-coding 605-67 chr20 58306225 58306753 + 2 NA intron (NR_003505, intron 2 of 16) intron (NR_003505, intron 2 of 16) 2950 NR_003505 55370 Hs.473179 NM_018498 PPP4R1L C20orf192|PPP4R1P1|PRO1085 protein phosphatase 4 regulatory subunit 1 like (pseudogene) pseudo 459-25 chr10 15456978 15457373 + 2 NA Intergenic Intergenic -85886 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 355-422 chr5 174863324 174863652 + 2 NA Intergenic L1PA8A|LINE|L1 111754 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 411-245 chr5 180247308 180247591 + 2 NA exon (NM_001135044, exon 7 of 7) exon (NM_001135044, exon 7 of 7) 33159 NM_001308244 5601 Hs.484371 NM_002752 ENSG00000050748 MAPK9 JNK-55|JNK2|JNK2A|JNK2ALPHA|JNK2B|JNK2BETA|PRKM9|SAPK|SAPK1a|p54a|p54aSAPK mitogen-activated protein kinase 9 protein-coding 380-396 chr8 82006599 82006854 + 2 NA Intergenic Intergenic -164440 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 372-105 chr12 20266318 20266528 + 2 NA Intergenic AluSx1|SINE|Alu -102822 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 324-368 chr3 163152107 163152292 + 2 NA Intergenic L1PBa|LINE|L1 151102 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 430-50 chr11 28521772 28522094 + 2 NA Intergenic LTR33|LTR|ERVL -44385 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 243-287 chr3 89539868 89540106 + 2 NA Intergenic AluJb|SINE|Alu 432366 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 371-239 chr3 72859887 72860165 + 2 NA Intergenic Intergenic -11581 NM_018130 55164 Hs.606584 NM_018130 ENSG00000144736 SHQ1 GRIM-1|Shq1p SHQ1, H/ACA ribonucleoprotein assembly factor protein-coding 602-104 chr5 38260812 38261273 + 2 NA intron (NM_152403, intron 1 of 21) intron (NM_152403, intron 1 of 21) 2483 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 323-218 chr19 36959134 36959347 + 2 NA intron (NM_001204839, intron 5 of 8) L1M2|LINE|L1 42908 NM_198539 374900 Hs.404220 NM_198539 ENSG00000198453 ZNF568 ZFP568 zinc finger protein 568 protein-coding 128-51 chr5 73822650 73822760 + 2 NA intron (NM_001244364, intron 1 of 27) AluJo|SINE|Alu 9159 NM_001244364 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 360-462 chr8 86117842 86118023 + 2 NA intron (NM_152565, intron 2 of 7) L2c|LINE|L2 19022 NM_152565 245972 Hs.436360 NM_152565 ENSG00000147614 ATP6V0D2 ATP6D2|VMA6 ATPase H+ transporting V0 subunit d2 protein-coding 298-442 chr7 104320903 104321066 + 2 NA Intergenic L1M4a1|LINE|L1 -7672 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 215-19 chr1 217399184 217399354 + 2 NA Intergenic Intergenic 231821 NM_001297754 55105 Hs.362343 NM_018040 ENSG00000092978 GPATCH2 CT110|GPATC2|PPP1R30|Pfa1 G-patch domain containing 2 protein-coding 324-180 chr15 56397590 56397794 + 2 NA intron (NM_198524, intron 9 of 12) THE1B|LTR|ERVL-MaLR 32268 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 514-263 chr7 20202212 20202578 + 2 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 14989 NM_182762 346389 Hs.598388 NM_182762 ENSG00000183742 MACC1 7A5|SH3BP4L MET transcriptional regulator MACC1 protein-coding 228-172 chr2 106743433 106743599 + 2 NA Intergenic Intergenic 142512 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 554 chr1 18297770 18298241 + 2 NA intron (NM_032880, intron 3 of 9) L2a|LINE|L2 -182925 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 571-6 chr1 171386934 171387326 + 2 NA Intergenic Intergenic 48234 NR_002719 7151 Hs.661092 NR_002719 TOP1P1 - DNA topoisomerase I pseudogene 1 pseudo 312-185 chr17 33413532 33413730 + 2 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 120129 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 339-3 chr1 26945937 26946131 + 2 NA intron (NM_006600, intron 8 of 8) intron (NM_006600, intron 8 of 8) 14434 NM_152365 126695 Hs.188881 NM_152365 ENSG00000175707 KDF1 C1orf172|ECTD12 keratinocyte differentiation factor 1 protein-coding 325-582 chr9 137344511 137344829 + 2 NA intron (NM_017820, intron 17 of 21) MLT1E2-int|LTR|ERVL-MaLR -42399 NM_001004354 441478 Hs.535075 NM_001004354 ENSG00000198435 NRARP - NOTCH regulated ankyrin repeat protein protein-coding 173-128 chr7 27222117 27222274 + 2 NA Intergenic Intergenic -20607 NM_001304519 2128 Hs.369879 NM_001989 ENSG00000106038 EVX1 EVX-1 even-skipped homeobox 1 protein-coding 345-486 chr7 21660579 21660913 + 2 NA intron (NM_001277115, intron 30 of 81) intron (NM_001277115, intron 30 of 81) 117707 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 393-198 chr20 19380122 19380434 + 2 NA intron (NM_020689, intron 2 of 16) L2b|LINE|L2 -95682 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 319-509 chr7 105743451 105743639 + 2 NA intron (NM_020725, intron 3 of 11) intron (NM_020725, intron 3 of 11) -64383 NM_138495 222255 Hs.745056 NM_020725 ENSG00000146776 ATXN7L1 ATXN7L4 ataxin 7 like 1 protein-coding 324-239 chr19 29423935 29424251 + 2 NA intron (NR_040029, intron 2 of 9) THE1B|LTR|ERVL-MaLR 101659 NR_040029 284395 Hs.631601 NR_040029 ENSG00000264515 LOC284395 - uncharacterized LOC284395 ncRNA 657-35 chr16 78016741 78017323 + 2 NA Intergenic Intergenic -5516 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 283-221 chr2 23765921 23766069 + 2 NA intron (NR_125717, intron 23 of 28) intron (NR_125717, intron 23 of 28) 161128 NM_001242338 54454 Hs.467862 NM_017552 ENSG00000119778 ATAD2B - ATPase family AAA domain containing 2B protein-coding 318-182 chr15 60861246 60861511 + 2 NA intron (NM_134261, intron 1 of 10) MIRc|SINE|MIR 179809 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 443-39 chr10 67517087 67517445 + 2 NA intron (NM_001127384, intron 5 of 17) L1MA9|LINE|L1 -113856 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 366-340 chr5 36772633 36772935 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 103910 NR_046262 646719 Hs.355684 NR_046262 ENSG00000285967 NIPBL-DT NIPBL-AS|NIPBL-AS1 NIPBL divergent transcript ncRNA 355-523 chr8 139479705 139480023 + 2 NA Intergenic L1MB7|LINE|L1 223259 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 371-194 chr2 163154258 163154531 + 2 NA Intergenic FordPrefect|DNA|hAT-Tip100 -315627 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 289-117 chr12 99870262 99870446 + 2 NA intron (NM_152788, intron 1 of 25) L1PA16|LINE|L1 114300 NM_001352187 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 245-256 chr4 89446758 89446923 + 2 NA Intergenic MLT1L-int|LTR|ERVL-MaLR -139040 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 526-268 chr9 116122366 116122859 + 2 NA Intergenic L1PB|LINE|L1 -31179 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 244-334 chr7 8966762 8966957 + 2 NA Intergenic Intergenic 533250 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 282-402 chr6 62732786 62733051 + 2 NA Intergenic Intergenic -446691 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 549-29 chr10 74344617 74345053 + 2 NA intron (NM_001369124, intron 4 of 9) L3|LINE|CR1 168072 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 366-302 chr4 42695817 42696157 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -38882 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 594-7 chr1 158375248 158375696 + 2 NA Intergenic L1MA4A|LINE|L1 21578 NM_030893 913 Hs.249217 NM_030893 ENSG00000158488 CD1E CD1A|R2 CD1e molecule protein-coding 550-8 chr1 92792285 92792713 + 2 NA promoter-TSS (NM_005665) promoter-TSS (NM_005665) -89 NM_005665 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 421-142 chr2 103017502 103017762 + 2 NA Intergenic L1ME5|LINE|L1 -33203 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 237-242 chr3 84590848 84591050 + 2 NA Intergenic HAL1M8|LINE|L1 278626 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 274-183 chr19 27595540 27595727 + 2 NA Intergenic ALR/Alpha|Satellite|centr -197798 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 184-164 chr8 20572214 20572379 + 2 NA Intergenic LTR16E2|LTR|ERVL 42630 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 522-9 chr1 177297402 177297903 + 2 NA Intergenic L1PA16|LINE|L1 -53934 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 267-411 chr8 35660171 35660387 + 2 NA intron (NM_001322818, intron 4 of 16) intron (NM_001322818, intron 4 of 16) 50041 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 283-291 chr3 53633994 53634186 + 2 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 139479 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 672-72 chr3 96028776 96029399 + 2 NA Intergenic Intergenic -330877 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 595-75 chr2 11035188 11035650 + 2 NA Intergenic L1PB3|LINE|L1 96757 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 226-160 chr2 53551697 53551854 + 2 NA Intergenic L1M4a2|LINE|L1 -216008 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 264-126 chr14 48669198 48669410 + 2 NA Intergenic Intergenic -874290 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 297-83 chr11 89612106 89612269 + 2 NA Intergenic Intergenic -22630 NM_001143837 50507 Hs.371036 NM_016931 ENSG00000086991 NOX4 KOX|KOX-1|RENOX NADPH oxidase 4 protein-coding 663-41 chr16 60002948 60003481 + 2 NA intron (NR_110917, intron 1 of 3) LTR50|LTR|ERVL 147861 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 226-354 chr8 112849158 112849323 + 2 NA intron (NM_001363185, intron 9 of 66) intron (NM_001363185, intron 9 of 66) 205747 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 307-234 chr2 56993081 56993342 + 2 NA Intergenic Intergenic -807441 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 362-266 chr3 26650538 26650759 + 2 NA intron (NM_001317810, intron 2 of 2) MER97c|DNA|hAT-Tip100 25981 NM_001317810 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 582-138 chr6 130512048 130512537 + 2 NA Intergenic Intergenic 75175 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 583-48 chr12 128334924 128335327 + 2 NA intron (NM_001136103, intron 1 of 8) intron (NM_001136103, intron 1 of 8) 41033 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 227-220 chr22 47133961 47134109 + 2 NA intron (NM_001284305, intron 12 of 12) intron (NM_001284305, intron 12 of 12) -211536 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 378-290 chr3 124317334 124317668 + 2 NA intron (NM_001024660, intron 6 of 59) intron (NM_001024660, intron 6 of 59) -56831 NR_106731 102464832 NR_106731 ENSG00000276656 MIR6083 hsa-mir-6083 microRNA 6083 ncRNA 314-387 chr3 111100406 111100589 + 2 NA intron (NM_001243288, intron 1 of 8) Tigger4|DNA|TcMar-Tigger 28681 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 558-239 chrX 95540879 95541299 + 2 NA Intergenic L1MB7|LINE|L1 -477863 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 385-203 chr2 231237546 231237750 + 2 NA intron (NM_001352757, intron 8 of 19) L1ME4b|LINE|L1 39017 NM_001271466 80210 Hs.162411 NM_025139 ENSG00000135931 ARMC9 ARM|JBTS30|KU-MEL-1|NS21 armadillo repeat containing 9 protein-coding 210-221 chr5 35784712 35784868 + 2 NA intron (NM_024867, intron 30 of 36) intron (NM_024867, intron 30 of 36) -72101 NR_120485 3575 Hs.591742 NM_002185 ENSG00000168685 IL7R CD127|CDW127|IL-7R-alpha|IL7RA|ILRA interleukin 7 receptor protein-coding 597-93 chr3 99671857 99672350 + 2 NA intron (NM_020351, intron 1 of 3) intron (NM_020351, intron 1 of 3) 33509 NM_020351 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 553-151 chr3 59288790 59289167 + 2 NA Intergenic Intergenic -238946 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 372-277 chr20 13696196 13696536 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -57430 NR_136628 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 122-4 chr1 161271310 161271391 + 2 NA intron (NM_001102566, intron 1 of 2) L1M4|LINE|L1 12605 NM_001102566 654790 Hs.433150 NM_001102566 ENSG00000248485 PCP4L1 IQM1 Purkinje cell protein 4 like 1 protein-coding 278-193 chr19 39756842 39757089 + 2 NA Intergenic Intergenic -18936 NM_001828 1178 Hs.889 NM_001828 ENSG00000105205 CLC GAL10|Gal-10|LGALS10|LGALS10A|LPPL_HUMAN Charcot-Leyden crystal galectin protein-coding 224-111 chr17 28833194 28833371 + 2 NA intron (NM_001288635, intron 1 of 3) AluSx3|SINE|Alu 9508 NM_001288639 55731 Hs.564533 NM_018182 ENSG00000173065 FAM222B C17orf63 family with sequence similarity 222 member B protein-coding 254-94 chr13 43513466 43513666 + 2 NA intron (NM_001347965, intron 1 of 15) intron (NM_001347965, intron 1 of 15) 64714 NR_120399 100874130 Hs.738887 NR_120399 ENOX1-AS2 - ENOX1 antisense RNA 2 ncRNA 230-343 chr7 21467180 21467402 + 2 NA intron (NM_003112, intron 3 of 5) intron (NM_003112, intron 3 of 5) -3767 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 304-390 chr4 110908592 110908882 + 2 NA Intergenic Intergenic -48090 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 149-95 chr7 70190978 70191076 + 2 NA intron (NM_015570, intron 4 of 18) intron (NM_015570, intron 4 of 18) 592552 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 302-415 chr7 62968764 62968986 + 2 NA Intergenic ALR/Alpha|Satellite|centr 335181 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 356-462 chr7 115243070 115243259 + 2 NA Intergenic L1ME2|LINE|L1 -11809 NR_126407 104355291 NR_126407 ENSG00000233607 LINC01392 - long intergenic non-protein coding RNA 1392 ncRNA 312-567 chrX 122115688 122115877 + 2 NA Intergenic Intergenic 744810 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 347-426 chr6 5442415 5442648 + 2 NA intron (NM_006567, intron 4 of 6) intron (NM_006567, intron 4 of 6) 15544 NR_125848 101927972 Hs.668417 NR_125846 ENSG00000269985 LOC101927972 - uncharacterized LOC101927972 ncRNA 329-317 chr2 239598124 239598396 + 2 NA Intergenic MLT2B4|LTR|ERVL -164600 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 294-289 chr3 34815463 34815634 + 2 NA Intergenic L1MA9|LINE|L1 578475 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 476-232 chr5 150892326 150892682 + 2 NA intron (NM_001346557, intron 3 of 3) L1MD|LINE|L1 12479 NM_001172831 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 375-63 chr10 113135129 113135323 + 2 NA intron (NM_001349870, intron 1 of 11) intron (NM_001349870, intron 1 of 11) 5955 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 269-159 chr18 3072107 3072351 + 2 NA intron (NM_019856, intron 35 of 36) AluSg4|SINE|Alu -60282 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 334-410 chr5 22749839 22750111 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 103369 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 473-17 chr1 176932636 176932984 + 2 NA intron (NM_207108, intron 16 of 21) intron (NM_207108, intron 16 of 21) 96635 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 397-46 chr11 29610243 29610539 + 2 NA intron (NR_149107, intron 3 of 3) intron (NR_149107, intron 3 of 3) -8411 NR_149106 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 651-49 chr16 65896266 65896677 + 2 NA Intergenic Intergenic -320171 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 756-6 chr10 75476799 75477306 + 2 NA intron (NM_001305581, intron 2 of 6) AluJr|SINE|Alu 45428 NM_001305581 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 346-149 chr15 24933872 24934174 + 2 NA intron (NM_001349456, intron 4 of 12) AluSx|SINE|Alu -20870 NM_001349463 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 299-401 chr6 131878886 131879174 + 2 NA intron (NM_006208, intron 19 of 24) intron (NM_006208, intron 19 of 24) 71010 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 491-105 chr19 37000681 37001048 + 2 NA Intergenic Intergenic -77358 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 362-356 chr5 116266161 116266448 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 10561 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 344-107 chr12 37818148 37818385 + 2 NA Intergenic ALR/Alpha|Satellite|centr -498508 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 258-249 chr3 21691770 21691944 + 2 NA intron (NM_024697, intron 1 of 7) L1MB4|LINE|L1 59353 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 245-220 chr21 15750969 15751137 + 2 NA intron (NM_001352560, intron 1 of 23) LTR41B|LTR|ERVL 21071 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 317-375 chr5 15990870 15991143 + 2 NA Intergenic L1MA9|LINE|L1 55824 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 434-321 chr9 134954966 134955298 + 2 NA Intergenic L2c|LINE|L2 -37220 NM_002003 2219 Hs.440898 NM_002003 ENSG00000085265 FCN1 FCNM ficolin 1 protein-coding 492-215 chr5 117376483 117376784 + 2 NA Intergenic Intergenic -38879 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 384-167 chr2 60212930 60213227 + 2 NA Intergenic Intergenic 169958 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 374-108 chr15 27445056 27445423 + 2 NA intron (NM_001270873, intron 5 of 5) L1M4|LINE|L1 -283920 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 558-12 chr1 172871265 172871678 + 2 NA Intergenic Intergenic 179492 NM_005092 8995 Hs.248197 NM_005092 ENSG00000120337 TNFSF18 AITRL|GITRL|TL6|TNLG2A|hGITRL TNF superfamily member 18 protein-coding 305-378 chr4 41441193 41441476 + 2 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 80527 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 363-406 chr7 22366281 22366600 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -9286 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 257-218 chr2 175179992 175180180 + 2 NA intron (NM_001002258, intron 2 of 3) intron (NM_001002258, intron 2 of 3) 1624 NM_001689 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 179-38 chr18_GL383571v1_alt 32488 32600 + 2 NA Intergenic Intergenic 129903 NM_032160 92126 Hs.124673 NM_032160 ENSG00000171451 DSEL C18orf4|DE-epi2 dermatan sulfate epimerase like protein-coding 327-61 chr10 84243901 84244146 + 2 NA Intergenic MIRb|SINE|MIR -1030 NM_001012720 5995 Hs.1544 NM_002921 ENSG00000148604 RGR RP44 retinal G protein coupled receptor protein-coding 347-64 chr10 130728516 130728847 + 2 NA Intergenic Intergenic 233987 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 353-255 chr2 125385334 125385572 + 2 NA Intergenic L1MC1|LINE|L1 732532 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 253-385 chr7 52229680 52229880 + 2 NA Intergenic HAL1b|LINE|L1 -805853 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 423-310 chr9 79187252 79187591 + 2 NA Intergenic Intergenic -41755 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 526-240 chr8 31560845 31561223 + 2 NA Intergenic L1PA16|LINE|L1 -78718 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 311-241 chr2 33808240 33808516 + 2 NA intron (NR_126403, intron 1 of 5) L1ME3E|LINE|L1 -80161 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 483-130 chr2 180304803 180305066 + 2 NA Intergenic Intergenic -297637 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 261-218 chr20 51300736 51300891 + 2 NA Intergenic Intergenic 152164 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 248-216 chr2 225097202 225097353 + 2 NA Intergenic L1ME2|LINE|L1 -54809 NM_014689 55619 Hs.46578 NM_014689 ENSG00000135905 DOCK10 DRIP2|Nbla10300|ZIZ3 dedicator of cytokinesis 10 protein-coding 461-172 chr3 73542140 73542557 + 2 NA intron (NR_121660, intron 1 of 1) intron (NR_121660, intron 1 of 1) 19232 NM_001303140 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 252-425 chr8 106711758 106711980 + 2 NA intron (NM_181354, intron 8 of 13) LTR40b|LTR|ERVL -14238 NM_001198535 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 185-58 chr14 40315112 40315222 + 2 NA Intergenic Intergenic -639544 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 488-236 chr6 74480722 74481036 + 2 NA intron (NR_110856, intron 2 of 3) Tigger17a|DNA|TcMar-Tigger 411428 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 158-73 chr3 39200324 39200415 + 2 NA Intergenic Intergenic -7774 NM_001351377 165904 Hs.447868 NM_194293 ENSG00000168334 XIRP1 CMYA1|Xin xin actin binding repeat containing 1 protein-coding 297-344 chr4 146933258 146933460 + 2 NA intron (NR_133922, intron 4 of 13) intron (NR_133922, intron 4 of 13) 12505 NM_001300761 83894 Hs.378893 NM_031956 ENSG00000137473 TTC29 NYD-SP14|TBPP2A tetratricopeptide repeat domain 29 protein-coding 321-104 chr11 87824889 87825108 + 2 NA Intergenic HAL1|LINE|L1 -105587 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 227-310 chr6 67310817 67310992 + 2 NA Intergenic L1PB3|LINE|L1 -744447 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 379-324 chr7 106903525 106903826 + 2 NA intron (NM_001282426, intron 10 of 10) intron (NM_001282426, intron 10 of 10) 38196 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 117-34 chr5 129549279 129549389 + 2 NA intron (NM_133638, intron 6 of 22) L1MEd|LINE|L1 -88645 NR_125748 103689846 Hs.628635 NR_125748 ENSG00000249421 ADAMTS19-AS1 - ADAMTS19 antisense RNA 1 ncRNA 330-86 chr11 24815283 24815507 + 2 NA intron (NM_001252010, intron 5 of 9) intron (NM_001252010, intron 5 of 9) 318342 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 336-273 chr2 80561064 80561287 + 2 NA intron (NM_001282599, intron 6 of 11) intron (NM_001282599, intron 6 of 11) 247796 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 560-169 chr7 33982973 33983343 + 2 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 77619 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 482-25 chr1 218509521 218509881 + 2 NA promoter-TSS (NR_146760) promoter-TSS (NR_146760) -394 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 392-71 chr12 114332056 114332308 + 2 NA Intergenic L2b|LINE|L2 73962 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 446-267 chr6 103821570 103821965 + 2 NA Intergenic L1MA3|LINE|L1 1037779 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 300-52 chr10 84912012 84912205 + 2 NA Intergenic Intergenic 286797 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 402-107 chr16 80033375 80033593 + 2 NA Intergenic L1MEg|LINE|L1 238235 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 518-68 chr12 105488937 105489270 + 2 NA Intergenic L1M5|LINE|L1 158412 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 379-18 chr1 119387317 119387654 + 2 NA intron (NM_001005783, intron 6 of 8) intron (NM_001005783, intron 6 of 8) 18539 NR_046780 100874270 NR_046780 ENSG00000230921 HAO2-IT1 - HAO2 intronic transcript 1 ncRNA 228-99 chr14 68448621 68448768 + 2 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 180093 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 335-291 chr20 23441693 23441970 + 2 NA intron (NM_138283, intron 2 of 3) intron (NM_138283, intron 2 of 3) 2146 NM_138283 128817 Hs.352134 NM_138283 ENSG00000125823 CSTL1 CTES1|RCET11|dJ322G13.4 cystatin like 1 protein-coding 288-290 chr4 30428353 30428501 + 2 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -291942 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 396-73 chr11 78289740 78290029 + 2 NA intron (NM_080491, intron 1 of 9) intron (NM_080491, intron 1 of 9) 51996 NM_012296 9846 Hs.429434 NM_012296 ENSG00000033327 GAB2 - GRB2 associated binding protein 2 protein-coding 320-130 chr12 123074293 123074536 + 2 NA intron (NM_020845, intron 1 of 24) (CA)n|Simple_repeat|Simple_repeat -6970 NR_038290 100507091 Hs.683912 NR_038290 ENSG00000251497 PITPNM2-AS1 - PITPNM2 antisense RNA 1 ncRNA 374-291 chr5 3050055 3050413 + 2 NA Intergenic Intergenic -127601 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 250-319 chr4 110976993 110977235 + 2 NA Intergenic Intergenic -116467 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 342-483 chr7 41232621 41232834 + 2 NA Intergenic L1MEd|LINE|L1 131123 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 344-500 chr8 123990905 123991110 + 2 NA intron (NM_001039112, intron 12 of 40) L1PB3|LINE|L1 49775 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 233-161 chr2 34159644 34159834 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) 92513 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 551-2 chr1 52623373 52623881 + 2 NA Intergenic AluY|SINE|Alu -9541 NR_135157 348378 Hs.424589 NM_001042693 ENSG00000182183 SHISAL2A FAM159A|PRO7171|WWLS2783 shisa like 2A protein-coding 295-176 chr17 53294212 53294388 + 2 NA Intergenic Intergenic 308795 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 345-184 chr15 98163897 98164073 + 2 NA Intergenic Intergenic -75232 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 682-82 chr5 94171295 94171710 + 2 NA intron (NM_001145678, intron 20 of 20) L2a|LINE|L2 -59803 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 437-249 chr7 4323550 4323971 + 2 NA Intergenic AluSp|SINE|Alu -188923 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 283-251 chr2 193848549 193848715 + 2 NA Intergenic Intergenic -495637 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 236-239 chr3 139606464 139606664 + 2 NA intron (NM_001320510, intron 3 of 6) L1MC4a|LINE|L1 -66822 NM_001130992 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 373-215 chr2 155564255 155564622 + 2 NA Intergenic L1MC1|LINE|L1 690493 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 224-328 chr8 91275025 91275179 + 2 NA intron (NM_134266, intron 2 of 18) intron (NM_134266, intron 2 of 18) 25783 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 294-339 chr4 78039607 78039769 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -17635 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 147-6 chr10 44701832 44701956 + 2 NA Intergenic L1M4b|LINE|L1 -209422 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 320-517 chr7 81305333 81305512 + 2 NA Intergenic Intergenic 256397 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 324-41 chr1 226609016 226609305 + 2 NA TTS (NM_001003665) TTS (NM_001003665) 60396 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 304-45 chr10 30713832 30714122 + 2 NA intron (NR_036438, intron 9 of 9) LOR1a|LTR|ERV1 -9242 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 284-47 chr10 77268726 77268968 + 2 NA intron (NM_001271518, intron 1 of 27) intron (NM_001271518, intron 1 of 27) 81914 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 296-442 chr7 68524210 68524370 + 2 NA Intergenic Intergenic 504037 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 567-117 chr3 95853589 95854114 + 2 NA Intergenic Intergenic -170658 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 481-182 chr21 19868425 19868847 + 2 NA Intergenic Intergenic 31119 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 460-94 chr15 98591359 98591673 + 2 NA Intergenic Intergenic -57023 NM_001291858 3480 Hs.643120 NM_000875 ENSG00000140443 IGF1R CD221|IGFIR|IGFR|JTK13 insulin like growth factor 1 receptor protein-coding 372-477 chr8 54793742 54794021 + 2 NA Intergenic L1M3b|LINE|L1 177785 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 265-412 chr9 32975605 32975763 + 2 NA intron (NR_160920, intron 5 of 6) AluSx1|SINE|Alu 25892 NM_001195249 54840 Hs.20158 NM_017692 ENSG00000137074 APTX AOA|AOA1|AXA1|EAOH|EOAHA|FHA-HIT aprataxin protein-coding 445-148 chr20 6308761 6309036 + 2 NA Intergenic L1MA7|LINE|L1 -117834 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 190-71 chr17 57821634 57821804 + 2 NA Intergenic L1MEg|LINE|L1 28325 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 765-9 chr11 23774977 23775591 + 2 NA Intergenic Intergenic -356094 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 392-26 chr10 48966029 48966241 + 2 NA intron (NM_020945, intron 54 of 61) intron (NM_020945, intron 54 of 61) 19452 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 150-82 chr4 90910916 90911011 + 2 NA intron (NM_001145065, intron 8 of 10) MER115|DNA|hAT-Tip100 675932 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 633-126 chr9 79042358 79042863 + 2 NA Intergenic L1MD|LINE|L1 103056 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 353-384 chr4 105859834 105860089 + 2 NA Intergenic Intergenic -32789 NR_125927 101929529 Hs.603751 NR_125927 ENSG00000251175 LOC101929529 - uncharacterized LOC101929529 ncRNA 331-221 chr18 40195049 40195269 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 128873 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 381-378 chr8 67569607 67569824 + 2 NA intron (NM_020361, intron 2 of 10) intron (NM_020361, intron 2 of 10) 176645 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 735-63 chr4 55311389 55311882 + 2 NA Intergenic Intergenic -34607 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 258-60 chr10 109490313 109490548 + 2 NA Intergenic Intergenic 432816 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 290-12 chr1 83663704 83663865 + 2 NA intron (NR_119375, intron 2 of 2) intron (NR_119375, intron 2 of 2) 196762 NR_119374 101927560 Hs.559661 NR_119374 ENSG00000233008 LOC101927560 - uncharacterized LOC101927560 ncRNA 225-397 chr9 101698308 101698471 + 2 NA intron (NM_133445, intron 1 of 8) intron (NM_133445, intron 1 of 8) 40191 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 750-51 chr3 159542716 159543154 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 225677 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 378-213 chr2 15021273 15021524 + 2 NA Intergenic Intergenic 388681 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 270-361 chr7 48161128 48161316 + 2 NA Intergenic MER21-int|LTR|ERVL -10236 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 370-378 chr5 133557818 133558132 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 54566 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 426-143 chr2 133516903 133517178 + 2 NA intron (NM_207481, intron 3 of 17) intron (NM_207481, intron 3 of 17) 51423 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 421-240 chr5 63992446 63992767 + 2 NA Intergenic Intergenic -30314 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 283-67 chr10 105235930 105236075 + 2 NA intron (NM_014978, intron 20 of 26) intron (NM_014978, intron 20 of 26) -569786 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 177-113 chr4 43936332 43936446 + 2 NA Intergenic L1PB4|LINE|L1 -80472 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 546-239 chr8 115738157 115738585 + 2 NA Intergenic Intergenic -69396 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 676-95 chr5 53294017 53294563 + 2 NA Intergenic Intergenic 184448 NR_034107 257396 Hs.12326 NR_034107 ENSG00000247796 LOC257396 - uncharacterized LOC257396 ncRNA 367-108 chr13 33093318 33093656 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy 77064 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 206-71 chr14 85128677 85128815 + 2 NA Intergenic Intergenic -143186 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 399-200 chr3 19224073 19224314 + 2 NA intron (NM_144633, intron 1 of 15) intron (NM_144633, intron 1 of 15) 75683 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 185-16 chr1 218453695 218453836 + 2 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 11139 NR_125715 103611157 Hs.133379 NR_125715 ENSG00000281453 TGFB2-OT1 - TGFB2 overlapping transcript 1 ncRNA 256-144 chr15 97662007 97662256 + 2 NA Intergenic LTR16A1|LTR|ERVL -101433 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 330-314 chr20 7023132 7023437 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 230918 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 691-63 chr5 12409568 12410141 + 2 NA Intergenic L1MA2|LINE|L1 -165003 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 317-381 chr5 29965256 29965533 + 2 NA Intergenic L1ME1|LINE|L1 84834 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 202-225 chr6 49812781 49812908 + 2 NA intron (NR_125839, intron 1 of 3) L1MB3|LINE|L1 1304 NR_125839 101927020 Hs.571168 NR_125839 LOC101927020 - uncharacterized LOC101927020 ncRNA 289-425 chr6 164190808 164191066 + 2 NA Intergenic Intergenic -519453 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 416-77 chr11 97500534 97500747 + 2 NA Intergenic MIRb|SINE|MIR 992215 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 447-273 chr8 106932794 106933143 + 2 NA Intergenic Intergenic -162724 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 371-23 chr1 191240728 191240932 + 2 NA Intergenic L1MB8|LINE|L1 -12332 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 623-61 chr2 80359790 80360180 + 2 NA intron (NM_001282599, intron 1 of 11) L1M5|LINE|L1 46606 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 305-62 chr10 59155881 59156041 + 2 NA Intergenic Intergenic 20503 NR_131782 105682749 Hs.592518 NR_131782 CCEPR CCHE1|lncRNA-CCHE1 cervical carcinoma expressed PCNA regulatory lncRNA ncRNA 353-353 chr4 13724055 13724269 + 2 NA intron (NR_121681, intron 2 of 3) L1MD1|LINE|L1 68983 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 363-218 chr2 99097649 99097859 + 2 NA intron (NR_146001, intron 9 of 18) L1MEg|LINE|L1 43426 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 186-20 chr11 11139126 11139294 + 2 NA Intergenic MER34B|LTR|ERV1 214040 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 337-247 chr2 42894101 42894279 + 2 NA Intergenic Intergenic -101607 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 592-4 chr1 102061176 102061747 + 2 NA Intergenic L1PA11|LINE|L1 -64227 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 422-281 chr7 42488420 42488813 + 2 NA Intergenic Intergenic 217831 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 274-30 chr10 6952945 6953209 + 2 NA Intergenic Intergenic 173479 NR_038291 100507127 Hs.498571 NR_038291 ENSG00000238266 LINC00707 - long intergenic non-protein coding RNA 707 ncRNA 301-43 chr10 67755089 67755277 + 2 NA Intergenic AluJr|SINE|Alu -58988 NM_013266 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 576-29 chr12 13094371 13094875 + 2 NA intron (NM_001080555, intron 1 of 6) intron (NM_001080555, intron 1 of 6) 1052 NM_001206845 83445 Hs.240053 NM_031289 ENSG00000111305 GSG1 - germ cell associated 1 protein-coding 177-145 chr6 170040075 170040224 + 2 NA Intergenic Intergenic 77526 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 210-145 chr2 174931353 174931521 + 2 NA intron (NM_001025201, intron 4 of 12) intron (NM_001025201, intron 4 of 12) 73816 NM_001822 1123 Hs.380138 NM_001822 ENSG00000128656 CHN1 ARHGAP2|CHN|DURS2|NC|RHOGAP2 chimerin 1 protein-coding 205-257 chr7 42632442 42632582 + 2 NA Intergenic FLAM_A|SINE|Alu 73935 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 322-538 chr8 107029832 107030122 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -259733 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 345-173 chr15 61265775 61265994 + 2 NA Intergenic Intergenic -36582 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 271-81 chr11 124429277 124429468 + 2 NA Intergenic L1MEd|LINE|L1 -4501 NM_001005196 283162 Hs.553671 NM_001005196 ENSG00000280090 OR8B4 OR11-315|OR8B4P olfactory receptor family 8 subfamily B member 4 (gene/pseudogene) protein-coding 246-193 chr2 78970235 78970472 + 2 NA Intergenic Intergenic -55349 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 303-302 chr3 191982663 191982866 + 2 NA Intergenic Intergenic -255866 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 305-223 chr18 75324723 75324952 + 2 NA Intergenic L1MEi|LINE|L1 102866 NM_001037331 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 271-465 chr8 133415574 133415727 + 2 NA Intergenic Intergenic -118346 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 326-425 chr5 115441494 115441679 + 2 NA Intergenic L1M2|LINE|L1 103189 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 726-45 chr20 48448994 48449540 + 2 NA Intergenic Intergenic 89356 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 584-127 chr5 11743444 11743998 + 2 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) -154655 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 495-78 chr16 77432114 77432569 + 2 NA intron (NM_199355, intron 2 of 22) intron (NM_199355, intron 2 of 22) 2693 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 304-101 chr12 14384673 14384892 + 2 NA promoter-TSS (NM_181352) promoter-TSS (NM_181352) -499 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 285-86 chr12 40652847 40653066 + 2 NA Intergenic L2a|LINE|L2 -39483 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 351-129 chr14 63105143 63105428 + 2 NA Intergenic Intergenic -59827 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 271-409 chr7 69923991 69924183 + 2 NA intron (NM_015570, intron 2 of 18) L1M5|LINE|L1 325612 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 203-234 chr8 101630323 101630479 + 2 NA intron (NM_024915, intron 9 of 15) L1M5|LINE|L1 137962 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 289-414 chr6 65561708 65561927 + 2 NA intron (NM_001292009, intron 2 of 43) intron (NM_001292009, intron 2 of 43) 17987 NM_198283 346007 Hs.25067 NM_198283 ENSG00000188107 EYS C6orf178|C6orf179|C6orf180|EGFL10|EGFL11|RP25|SPAM|bA166P24.2|bA307F22.3|bA74E24.1|dJ1018A4.2|dJ22I17.2|dJ303F19.1 eyes shut homolog protein-coding 358-323 chr4 29691309 29691519 + 2 NA Intergenic Intergenic 477122 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 216-243 chr4 28574891 28575075 + 2 NA Intergenic Intergenic -244599 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 138-20 chr13 72712677 72712793 + 2 NA intron (NM_001071775, intron 2 of 2) intron (NM_001071775, intron 2 of 2) 14894 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 168-2 chr1 92556544 92556635 + 2 NA intron (NM_001350198, intron 19 of 19) MER6B|DNA|TcMar-Tigger -69664 NM_005263 2672 Hs.73172 NM_005263 ENSG00000162676 GFI1 GFI-1|GFI1A|SCN2|ZNF163 growth factor independent 1 transcriptional repressor protein-coding 494-138 chr2 137315970 137316408 + 2 NA intron (NM_001316349, intron 12 of 27) intron (NM_001316349, intron 12 of 27) 550644 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 319-249 chr2 82407085 82407297 + 2 NA Intergenic Intergenic -449612 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 630-15 chr11 100808737 100809094 + 2 NA intron (NM_152432, intron 3 of 23) intron (NM_152432, intron 3 of 23) -120960 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 344-382 chr5 42145471 42145711 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 29754 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 224-273 chr6 37961561 37961771 + 2 NA intron (NM_021943, intron 2 of 5) L1M1|LINE|L1 141939 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 228-119 chr16 26771033 26771179 + 2 NA Intergenic L2|LINE|L2 -295821 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 396-261 chr4 136725817 136726115 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -467790 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 264-399 chr8 15442012 15442161 + 2 NA Intergenic Intergenic -98001 NM_178234 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 333-235 chr2 48372726 48372987 + 2 NA intron (NM_002158, intron 5 of 6) intron (NM_002158, intron 5 of 6) 58174 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 318-353 chr3 60221705 60221980 + 2 NA intron (NM_001320900, intron 6 of 9) L2a|LINE|L2 -140933 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 259-192 chr2 52190523 52190756 + 2 NA intron (NR_135237, intron 7 of 10) HAL1|LINE|L1 -180009 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 373-282 chr4 34918840 34919129 + 2 NA Intergenic Intergenic -649237 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 351-78 chr11 96105632 96105854 + 2 NA intron (NM_032427, intron 1 of 4) intron (NM_032427, intron 1 of 4) -181536 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 177-53 chr15 25878520 25878669 + 2 NA Intergenic Intergenic -15392 NM_024490 57194 Hs.638517 NM_024490 ENSG00000206190 ATP10A ATP10C|ATPVA|ATPVC ATPase phospholipid transporting 10A (putative) protein-coding 353-559 chr9 96790186 96790422 + 2 NA Intergenic L1PREC2|LINE|L1 -12175 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 358-65 chr11 54774137 54774385 + 2 NA Intergenic ALR/Alpha|Satellite|centr 67429 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 305-268 chr2 118601683 118601897 + 2 NA intron (NR_110272, intron 2 of 2) intron (NR_110272, intron 2 of 2) 1176 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 162-75 chr21 30451452 30451562 + 2 NA Intergenic Intergenic 11228 NM_181623 254950 Hs.553654 NM_181623 ENSG00000186970 KRTAP15-1 KAP15.1 keratin associated protein 15-1 protein-coding 212-156 chr2 81356742 81356875 + 2 NA Intergenic Intergenic 110138 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 447-37 chr11 8121149 8121471 + 2 NA intron (NM_001135109, intron 1 of 1) intron (NM_001135109, intron 1 of 1) 39948 NM_177972 7275 Hs.568986 NM_003320 ENSG00000166402 TUB RDOB|rd5 TUB bipartite transcription factor protein-coding 165-82 chr3 114583807 114583934 + 2 NA intron (NM_001348803, intron 6 of 13) intron (NM_001348803, intron 6 of 13) 40336 NM_001164347 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 329-423 chr4 123429197 123429380 + 2 NA Intergenic L2c|LINE|L2 29748 NM_005841 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 367-103 chr12 130724398 130724635 + 2 NA Intergenic AluSc8|SINE|Alu -8211 NM_001351233 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 260-110 chr12 128737778 128737939 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 86100 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 126-63 chr8 106455446 106455523 + 2 NA intron (NM_001198532, intron 1 of 15) intron (NM_001198532, intron 1 of 15) 7560 NM_001198532 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 170-38 chr12 114081503 114081643 + 2 NA Intergenic Intergenic -115248 NM_016196 9904 Hs.7482 NM_016196 ENSG00000122965 RBM19 Mrd1 RNA binding motif protein 19 protein-coding 195-228 chr7 72064607 72064776 + 2 NA intron (NM_001363460, intron 3 of 5) intron (NM_001363460, intron 3 of 5) 272700 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 385-367 chr7 133192011 133192247 + 2 NA Intergenic Intergenic -60938 NM_001037126 60412 Hs.321273 NM_021807 ENSG00000131558 EXOC4 SEC8|SEC8L1|Sec8p exocyst complex component 4 protein-coding 528-64 chr12 79809082 79809556 + 2 NA intron (NM_001244990, intron 11 of 24) L1MC5a|LINE|L1 104592 NM_001143886 4659 Hs.49582 NM_002480 ENSG00000058272 PPP1R12A M130|MBS|MYPT1 protein phosphatase 1 regulatory subunit 12A protein-coding 483-120 chr2 114701872 114702287 + 2 NA intron (NM_001321908, intron 2 of 25) L2c|LINE|L2 131469 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 258-271 chr3 154450748 154450977 + 2 NA Intergenic Intergenic -20672 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 156-105 chr8 105397538 105397658 + 2 NA intron (NM_001362837, intron 1 of 7) intron (NM_001362837, intron 1 of 7) 78055 NM_001362837 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 420-47 chr10 107516684 107516937 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -352104 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 264-221 chr2 173121060 173121283 + 2 NA intron (NM_133646, intron 2 of 11) ERVL-E-int|LTR|ERVL 45325 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 551-191 chr7 52202726 52203118 + 2 NA Intergenic L1MC2|LINE|L1 -809666 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 258-327 chr5 96103097 96103318 + 2 NA intron (NR_130776, intron 1 of 4) L1PA3|LINE|L1 24069 NR_030309 693168 NR_030309 ENSG00000207578 MIR583 MIRN583|hsa-mir-583 microRNA 583 ncRNA 147-80 chr7 80018730 80018829 + 2 NA Intergenic MIRb|SINE|MIR -116052 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 173-117 chr6 64548952 64549044 + 2 NA intron (NM_001292009, intron 26 of 43) intron (NM_001292009, intron 26 of 43) 742162 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 566-197 chr8 122272830 122273360 + 2 NA Intergenic Intergenic 295549 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 316-371 chr3 167136299 167136479 + 2 NA Intergenic L1ME1|LINE|L1 237706 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 262-378 chr6 96083883 96084055 + 2 NA intron (NM_006581, intron 1 of 2) intron (NM_006581, intron 1 of 2) 67995 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 488-38 chr10 126449275 126449686 + 2 NA intron (NR_148989, intron 5 of 6) L1MA9|LINE|L1 23550 NR_148989 728158 Hs.646701 NR_148989 LOC728158 - uncharacterized LOC728158 ncRNA 302-51 chr10 75696007 75696172 + 2 NA intron (NR_131178, intron 1 of 7) intron (NR_131178, intron 1 of 7) -16366 NR_132791 105378367 Hs.464836 NR_132791 LOC105378367 - uncharacterized LOC105378367 ncRNA 381-418 chrX 99169747 99169976 + 2 NA Intergenic (AATAA)n|Simple_repeat|Simple_repeat 1240412 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 407-345 chr9 94088648 94089005 + 2 NA intron (NM_152422, intron 4 of 8) intron (NM_152422, intron 4 of 8) 4362 NM_001253829 138639 Hs.437943 NM_152422 ENSG00000158079 PTPDC1 PTP9Q22 protein tyrosine phosphatase domain containing 1 protein-coding 357-359 chr5 125623074 125623371 + 2 NA Intergenic Intergenic 129961 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 470-224 chr5 151809182 151809645 + 2 NA 3' UTR (NM_005754, exon 12 of 12) 3' UTR (NM_005754, exon 12 of 12) -37237 NR_132345 100652758 Hs.587054 NM_001278082 LOC100652758 - uncharacterized LOC100652758 ncRNA 576-107 chr3 59920112 59920632 + 2 NA intron (NR_135491, intron 5 of 6) intron (NR_135491, intron 5 of 6) 160537 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 383-275 chr4 43145881 43146127 + 2 NA Intergenic L2b|LINE|L2 252738 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 279-152 chr19 12229092 12229253 + 2 NA Intergenic LTR19-int|LTR|ERV1 34157 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 277-39 chr10 16020866 16021042 + 2 NA Intergenic L1M7|LINE|L1 -160421 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 481-136 chr2 44640657 44641052 + 2 NA intron (NM_024766, intron 3 of 10) X7B_LINE|LINE|CR1 278907 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 328-117 chr12 97445853 97446087 + 2 NA Intergenic Intergenic -16806 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 310-34 chr1 227960692 227960946 + 2 NA Intergenic L1M5|LINE|L1 -6192 NR_153418 107985355 Hs.660700 NR_153418 LOC107985355 - uncharacterized LOC107985355 ncRNA 260-248 chr20 62775688 62775884 + 2 NA intron (NR_046224, intron 1 of 2) MLT1D|LTR|ERVL-MaLR 1070 NR_046225 100652730 Hs.254951 NR_046224 LINC00659 - long intergenic non-protein coding RNA 659 ncRNA 530-283 chrX 64484724 64485066 + 2 NA Intergenic L1PA5|LINE|L1 -89443 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 272-245 chr21 20053767 20053990 + 2 NA Intergenic Intergenic -154123 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 346-155 chr15 48264182 48264395 + 2 NA intron (NM_001184832, intron 17 of 26) intron (NM_001184832, intron 17 of 26) 57986 NM_001184832 6557 Hs.123116 NM_000338 ENSG00000074803 SLC12A1 BSC1|NKCC2 solute carrier family 12 member 1 protein-coding 488-82 chr14 70913868 70914240 + 2 NA intron (NM_014982, intron 1 of 35) intron (NM_014982, intron 1 of 35) 6595 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 348-37 chr1 232298271 232298488 + 2 NA Intergenic Intergenic 217229 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 466-48 chr11 87894182 87894552 + 2 NA Intergenic Intergenic -174956 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 304-235 chr2 4108285 4108573 + 2 NA Intergenic Intergenic 134268 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 290-29 chr1 213351946 213352198 + 2 NA Intergenic Intergenic 300831 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 166-111 chr7 90985926 90986052 + 2 NA intron (NM_012395, intron 9 of 13) L1ME4a|LINE|L1 276173 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 389-5 chr1 55836826 55837121 + 2 NA Intergenic Ricksha_a|DNA|MULE-MuDR 107990 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 347-392 chr5 45321482 45321687 + 2 NA intron (NM_021072, intron 5 of 7) intron (NM_021072, intron 5 of 7) 374796 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 319-341 chr3 115460253 115460424 + 2 NA Intergenic L1MC3|LINE|L1 -163172 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 297-324 chr4 48947519 48947685 + 2 NA Intergenic MER65C|LTR|ERV1 -38673 NM_025087 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 499-39 chr11 30369158 30369504 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 46227 NM_152316 120534 Hs.502208 NM_152316 ENSG00000152219 ARL14EP ARF7EP|C11orf46|dJ299F11.1 ADP ribosylation factor like GTPase 14 effector protein protein-coding 286-45 chr10 80774959 80775208 + 2 NA Intergenic L1MB8|LINE|L1 125286 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 706-64 chr6 95652187 95652628 + 2 NA Intergenic Intergenic 74872 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 305-130 chr12 91865815 91866028 + 2 NA Intergenic Intergenic 275792 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 337-494 chr6 76180101 76180400 + 2 NA Intergenic L1PA16|LINE|L1 -107572 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 299-255 chr20 20248291 20248472 + 2 NA intron (NM_015585, intron 19 of 26) intron (NM_015585, intron 19 of 26) -119723 NM_002196 3642 Hs.89584 NM_002196 ENSG00000173404 INSM1 IA-1|IA1 INSM transcriptional repressor 1 protein-coding 344-185 chr17 34890772 34891024 + 2 NA Intergenic Intergenic 70562 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 118-58 chr7 144167060 144167131 + 2 NA Intergenic L1MA9|LINE|L1 -15875 NM_001278507 100142659 Hs.661442 NM_001278507 ENSG00000244693 CTAGE8 CTAGE4 CTAGE family member 8 protein-coding 197-125 chr22 22035080 22035236 + 2 NA intron (NR_135291, intron 1 of 6) intron (NR_135291, intron 1 of 6) 8776 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 366-300 chr4 37307609 37307876 + 2 NA intron (NM_001144990, intron 1 of 6) L1MA5|LINE|L1 62999 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 730-71 chr7 25283367 25283778 + 2 NA Intergenic Intergenic -55086 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 226-197 chr20 12905787 12905971 + 2 NA intron (NR_109868, intron 7 of 11) Tigger3b|DNA|TcMar-Tigger 31084 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 561-179 chr7 3455028 3455405 + 2 NA intron (NM_152744, intron 1 of 44) L1MD2|LINE|L1 153964 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 494-242 chr6 38760747 38761080 + 2 NA intron (NM_001371, intron 9 of 91) MSTB|LTR|ERVL-MaLR 45602 NM_001371 1769 Hs.520106 NM_001371 ENSG00000124721 DNAH8 ATPase|hdhc9 dynein axonemal heavy chain 8 protein-coding 365-144 chr16 71550616 71550897 + 2 NA Intergenic L1M4b|LINE|L1 -14260 NR_103852 100132529 Hs.710296 NR_103851 ENSG00000260886 TAT-AS1 - TAT antisense RNA 1 ncRNA 373-412 chr8 83521736 83522084 + 2 NA Intergenic L1MEf|LINE|L1 118152 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 343-271 chr2 132840560 132840771 + 2 NA intron (NM_207481, intron 11 of 17) Tigger2b_Pri|DNA|TcMar-Tigger -74892 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 439-215 chr4 127347991 127348269 + 2 NA Intergenic Intergenic -284827 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 535-15 chr1 93475811 93476306 + 2 NA intron (NM_001024948, intron 1 of 13) L1M2|LINE|L1 27927 NM_001024948 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 354-339 chr4 89477170 89477478 + 2 NA Intergenic L1ME4b|LINE|L1 -169524 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 194-126 chr3 104852130 104852280 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -514508 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 206-45 chr11 33498993 33499151 + 2 NA intron (NM_012194, intron 1 of 20) intron (NM_012194, intron 1 of 20) 122964 NM_012194 25758 Hs.502266 NM_012194 ENSG00000110427 KIAA1549L C11orf41|C11orf69|G2 KIAA1549 like protein-coding 337-80 chr11 29372889 29373146 + 2 NA Intergenic Intergenic -221396 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 344-406 chr5 161991639 161991821 + 2 NA intron (NR_126372, intron 1 of 2) intron (NR_126372, intron 1 of 2) 9466 NR_126372 104326188 NR_126372 LINC01202 - long intergenic non-protein coding RNA 1202 ncRNA 286-201 chr2 51227192 51227427 + 2 NA intron (NR_135237, intron 2 of 10) ERV3-16A3_I-int|LTR|ERVL 194708 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 129-82 chr9 77641848 77641951 + 2 NA intron (NM_004297, intron 1 of 6) L1MC4|LINE|L1 6423 NM_004297 9630 Hs.657795 NM_004297 ENSG00000156049 GNA14 - G protein subunit alpha 14 protein-coding 453-135 chr2 212353886 212354326 + 2 NA intron (NM_001042599, intron 1 of 26) intron (NM_001042599, intron 1 of 26) 72254 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 252-133 chr15 97144157 97144331 + 2 NA Intergenic Intergenic 360809 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 314-337 chr20 12398091 12398389 + 2 NA Intergenic LTR40a|LTR|ERVL 480347 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 262-69 chr11 13488836 13489067 + 2 NA Intergenic Intergenic 7046 NM_000315 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 454-185 chr20 13136936 13137331 + 2 NA intron (NM_001349945, intron 10 of 12) intron (NM_001349945, intron 10 of 12) -84141 NM_080826 140862 Hs.559353 NM_080826 ENSG00000101230 ISM1 C20orf82|ISM|Isthmin|bA149I18.1|dJ1077I2.1 isthmin 1 protein-coding 260-64 chr10 111885322 111885507 + 2 NA Intergenic L2c|LINE|L2 298351 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 322-574 chr9 123530874 123531057 + 2 NA intron (NM_001352968, intron 12 of 18) MER44A|DNA|TcMar-Tigger -45343 NR_106972 102465688 NR_106972 ENSG00000274932 MIR7150 hsa-mir-7150 microRNA 7150 ncRNA 296-162 chr15 91548048 91548260 + 2 NA Intergenic Intergenic 84815 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 254-308 chr5 44198450 44198688 + 2 NA Intergenic Intergenic -190163 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 347-262 chr20 19521993 19522263 + 2 NA intron (NM_020689, intron 3 of 16) MER3|DNA|hAT-Charlie -237532 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 313-76 chr11 25494724 25494889 + 2 NA Intergenic MLT2A2|LTR|ERVL -694317 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 234-328 chr5 169466604 169466834 + 2 NA Intergenic Intergenic -117054 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 471-145 chr20 10119976 10120295 + 2 NA intron (NR_040710, intron 2 of 4) L1MB7|LINE|L1 85148 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 199-96 chr2 6465292 6465448 + 2 NA Intergenic Intergenic -89948 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 598-120 chr6 98487459 98488011 + 2 NA Intergenic Intergenic 343965 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 598-39 chr13 31256499 31256953 + 2 NA intron (NM_194318, intron 6 of 14) L1PA7|LINE|L1 56751 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 386-293 chr5 73345754 73346053 + 2 NA Intergenic L1MB7|LINE|L1 7997 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 389-222 chr3 19652676 19652946 + 2 NA Intergenic L1M3de|LINE|L1 281406 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 300-442 chr7 131336327 131336581 + 2 NA intron (NM_001321316, intron 1 of 17) L1MEg|LINE|L1 8578 NM_001321316 4289 Hs.44693 NM_013255 ENSG00000128585 MKLN1 TWA2 muskelin 1 protein-coding 442-295 chr8 121510182 121510582 + 2 NA Intergenic HERVL74-int|LTR|ERVL -128964 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 511-234 chr6 119699704 119700040 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) 150064 NR_134600 105377975 Hs.671597 NR_134600 LOC105377975 - uncharacterized LOC105377975 ncRNA 271-239 chr21 24554100 24554288 + 2 NA Intergenic Charlie15b|DNA|hAT-Charlie 125454 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 513-13 chr1 169762733 169763157 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -28866 NM_000450 6401 Hs.82848 NM_000450 ENSG00000007908 SELE CD62E|ELAM|ELAM1|ESEL|LECAM2 selectin E protein-coding 570-53 chr13 62146638 62147016 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -65455 NR_125787 103752583 Hs.578048 NR_125787 LINC01075 - long intergenic non-protein coding RNA 1075 ncRNA 388-58 chr10 130083526 130083778 + 2 NA intron (NM_001355042, intron 1 of 3) L1MC4a|LINE|L1 -22357 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 252-328 chr5 42092239 42092422 + 2 NA Intergenic Intergenic 83015 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 537-11 chr1 109379479 109379941 + 2 NA intron (NM_002959, intron 1 of 19) intron (NM_002959, intron 1 of 19) 13647 NM_001205228 6272 Hs.485195 NM_002959 ENSG00000134243 SORT1 Gp95|LDLCQ6|NT3|NTR3 sortilin 1 protein-coding 274-407 chr8 139588668 139588873 + 2 NA Intergenic Intergenic 114353 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 329-626 chrX 138563303 138563485 + 2 NA Intergenic L1MC4|LINE|L1 104399 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 1108-7 chr14 45632625 45633513 + 2 NA Intergenic MIR|SINE|MIR 82533 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 274-422 chrX 73743386 73743557 + 2 NA Intergenic L1MA9|LINE|L1 -48734 NR_003255 9383 Hs.529901 NR_003255 ENSG00000270641 TSIX LINC00013|NCRNA00013|XIST-AS|XIST-AS1|XISTAS TSIX transcript, XIST antisense RNA ncRNA 495-68 chr15 57641380 57641752 + 2 NA intron (NR_104370, intron 10 of 11) intron (NR_104370, intron 10 of 11) 49662 NR_104370 145781 Hs.437256 NM_001018090 ENSG00000137878 GCOM1 GRINL1A|Gcom2|MYZAP|MYZAP-POLR2M|gcom GRINL1A complex locus 1 protein-coding 289-434 chr7 17112737 17112958 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -185805 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 709-52 chr22 35374261 35374795 + 2 NA Intergenic L1MC4|LINE|L1 -6568 NM_002133 3162 Hs.517581 NM_002133 ENSG00000100292 HMOX1 HMOX1D|HO-1|HSP32|bK286B10 heme oxygenase 1 protein-coding 138-81 chr7 40240678 40240758 + 2 NA intron (NM_001193312, intron 7 of 12) intron (NM_001193312, intron 7 of 12) 105742 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 306-180 chr16 8002810 8002998 + 2 NA Intergenic L1PA8A|LINE|L1 586934 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 399-63 chr11 97762412 97762777 + 2 NA Intergenic Intergenic 1254169 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 186-99 chr21 32885480 32885600 + 2 NA Intergenic Intergenic -71837 NM_019596 56245 Hs.517235 NM_019596 ENSG00000205929 C21orf62 B37|C21orf120|PRED81 chromosome 21 open reading frame 62 protein-coding 480-117 chr18 1390937 1391292 + 2 NA Intergenic HAL1ME|LINE|L1 -31485 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 520-324 chr9 18278870 18279155 + 2 NA Intergenic L1ME1|LINE|L1 -195141 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 168-74 chr21 29948912 29949020 + 2 NA Intergenic HAL1|LINE|L1 -8914 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 443-212 chr4 5600106 5600465 + 2 NA intron (NM_147127, intron 16 of 21) intron (NM_147127, intron 16 of 21) 75129 NR_126518 10141 Hs.177972 NM_005750 ENSG00000082929 LINC01587 C4orf6|aC1 long intergenic non-protein coding RNA 1587 ncRNA 867-33 chr4 172743212 172743759 + 2 NA intron (NM_001034845, intron 5 of 12) ERVL-E-int|LTR|ERVL -16607 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 220-70 chr11 80355086 80355246 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 407637 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 236-99 chr13 20026115 20026280 + 2 NA intron (NM_197968, intron 7 of 24) intron (NM_197968, intron 7 of 24) 66383 NR_148365 7750 Hs.507433 NM_003453 ENSG00000121741 ZMYM2 FIM|MYM|RAMP|SCLL|ZNF198 zinc finger MYM-type containing 2 protein-coding 400-264 chr4 136945410 136945666 + 2 NA intron (NR_149105, intron 2 of 3) L1PB4|LINE|L1 -248218 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 299-233 chr2 167284333 167284592 + 2 NA Intergenic MLT1J1-int|LTR|ERVL-MaLR 97090 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 395-269 chr5 40102069 40102307 + 2 NA Intergenic LTR1A1|LTR|ERV1 49897 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 355-502 chr8 92108098 92108335 + 2 NA Intergenic Intergenic -4831 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 395-286 chr6 44946124 44946340 + 2 NA intron (NM_181356, intron 11 of 12) Tigger1|DNA|TcMar-Tigger 251538 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 292-469 chr9 105250553 105250753 + 2 NA intron (NM_001330731, intron 1 of 15) MIR3|SINE|MIR 6002 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 394-48 chr10 91640312 91640617 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger -7393 NM_005398 5507 Hs.303090 NM_005398 ENSG00000119938 PPP1R3C PPP1R5|PTG protein phosphatase 1 regulatory subunit 3C protein-coding 328-563 chr8 79229938 79230216 + 2 NA Intergenic L1MA1|LINE|L1 -102111 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 182-94 chr2 122916197 122916335 + 2 NA Intergenic Intergenic 157215 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 375-110 chr13 36725476 36725693 + 2 NA Intergenic L2b|LINE|L2 51564 NM_203451 400120 Hs.422375 NM_203451 ENSG00000180440 SERTM1 C13orf36 serine rich and transmembrane domain containing 1 protein-coding 397-25 chr10 21453567 21453812 + 2 NA Intergenic Intergenic 42952 NR_031736 100302129 NR_031736 ENSG00000222071 MIR1915 MIRN1915|hsa-mir-1915 microRNA 1915 ncRNA 468-101 chr16 27397103 27397550 + 2 NA Intergenic AluSx|SINE|Alu -4848 NM_181079 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 217-188 chr2 142919477 142919635 + 2 NA intron (NM_001199241, intron 4 of 14) intron (NM_001199241, intron 4 of 14) 41892 NM_001199241 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 385-287 chr5 4690664 4690950 + 2 NA Intergenic Intergenic -82674 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 225-222 chr3 125126543 125126721 + 2 NA intron (NM_001195483, intron 5 of 12) intron (NM_001195483, intron 5 of 12) 24920 NR_049815 100847039 NR_049815 ENSG00000264986 MIR5092 - microRNA 5092 ncRNA 344-216 chr19 56413113 56413375 + 2 NA intron (NM_001159860, intron 2 of 4) Charlie14a|DNA|hAT-Charlie 8912 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 334-22 chr1 107255405 107255730 + 2 NA intron (NM_001113226, intron 1 of 6) intron (NM_001113226, intron 1 of 6) 107498 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 295-392 chr5 165099076 165099242 + 2 NA Intergenic L1MB1|LINE|L1 628880 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 430-112 chr17 52328714 52329122 + 2 NA Intergenic (CTTCTC)n|Simple_repeat|Simple_repeat -61604 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 374-112 chr15 61338063 61338280 + 2 NA Intergenic Intergenic -108869 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 313-85 chr11 79582289 79582562 + 2 NA Intergenic Intergenic -141395 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 814-50 chr5 45866794 45867385 + 2 NA Intergenic Intergenic -170709 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 296-129 chr14 20076178 20076338 + 2 NA Intergenic L1MA8|LINE|L1 16213 NM_001004717 122742 Hs.553574 NM_001004717 ENSG00000176246 OR4L1 OR14-28|OR4L2P olfactory receptor family 4 subfamily L member 1 protein-coding 245-170 chr18 76003575 76003740 + 2 NA Intergenic L1PA10|LINE|L1 -119341 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 363-328 chr4 62432652 62432993 + 2 NA Intergenic Intergenic -271057 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 956-8 chr11 109164460 109165083 + 2 NA Intergenic Intergenic -257419 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 245-167 chr18 60370350 60370527 + 2 NA TTS (NM_005912) TTS (NM_005912) 2337 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 393-150 chr19 51844309 51844540 + 2 NA intron (NR_163433, intron 6 of 11) intron (NR_163433, intron 6 of 11) 43512 NM_001135590 84765 Hs.723015 NM_032679 ENSG00000161551 ZNF577 - zinc finger protein 577 protein-coding 667-118 chr8 118382027 118382626 + 2 NA intron (NM_001349811, intron 3 of 4) MamSINE1|SINE|tRNA-RTE -238675 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 242-160 chr2 5788479 5788638 + 2 NA Intergenic L1MEi|LINE|L1 24038 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 544-102 chr19 55951278 55951725 + 2 NA intron (NM_001317000, intron 1 of 9) (TATGTG)n|Simple_repeat|Simple_repeat 3669 NM_176811 126205 Hs.446925 NM_176811 ENSG00000179709 NLRP8 CLR19.2|NALP8|NOD16|PAN4 NLR family pyrin domain containing 8 protein-coding 345-135 chr13 55309287 55309600 + 2 NA Intergenic Intergenic 134989 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 378-361 chr6 7934300 7934491 + 2 NA intron (NR_037616, intron 4 of 12) intron (NR_037616, intron 4 of 12) -23607 NM_030810 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 263-328 chr5 66367393 66367606 + 2 NA Intergenic Intergenic 144105 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 442-40 chr11 14812053 14812448 + 2 NA intron (NM_000922, intron 5 of 15) L1MB7|LINE|L1 79955 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 293-79 chr12 24084837 24085059 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -127473 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 380-314 chr5 125057940 125058271 + 2 NA intron (NR_109882, intron 2 of 5) intron (NR_109882, intron 2 of 5) 21274 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 243-74 chr11 87679226 87679411 + 2 NA Intergenic Intergenic 40093 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 505-124 chr19 31132609 31132954 + 2 NA Intergenic Intergenic -34729 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 321-511 chr6 163192310 163192483 + 2 NA promoter-TSS (NR_122120) promoter-TSS (NR_122120) -394 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 115-14 chr14 77942574 77942657 + 2 NA Intergenic Intergenic 142506 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 412-11 chr1 117914870 117915248 + 2 NA intron (NM_001135589, intron 3 of 12) HAL1|LINE|L1 14562 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 220-314 chr6 41984947 41985114 + 2 NA intron (NM_001136017, intron 1 of 4) L1MA9|LINE|L1 -43182 NM_001760 896 Hs.534307 NM_001760 ENSG00000112576 CCND3 - cyclin D3 protein-coding 401-198 chr22 49409429 49409737 + 2 NA Intergenic L1MEg|LINE|L1 133883 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 306-256 chr2 160613536 160613780 + 2 NA Intergenic Intergenic -119851 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 244-44 chr10 125966772 125966976 + 2 NA intron (NM_001363549, intron 1 of 10) intron (NM_001363549, intron 1 of 10) 6399 NR_102707 101410540 Hs.557889 NR_102707 ENSG00000233409 FANK1-AS1 - FANK1 antisense RNA 1 ncRNA 306-561 chrX 81702603 81702866 + 2 NA Intergenic Intergenic 500632 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 140-68 chr7 25645309 25645441 + 2 NA intron (NR_157815, intron 3 of 4) intron (NR_157815, intron 3 of 4) 17765 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 277-24 chr1 182522647 182522852 + 2 NA intron (NM_001366934, intron 11 of 22) intron (NM_001366934, intron 11 of 22) 66507 NM_021133 6041 Hs.518545 NM_021133 ENSG00000135828 RNASEL PRCA1|RNS4 ribonuclease L protein-coding 196-239 chr7 134088943 134089088 + 2 NA Intergenic MER41-int|LTR|ERV1 -38325 NM_001365700 136332 Hs.149774 NM_144648 ENSG00000155530 LRGUK CFAP246 leucine rich repeats and guanylate kinase domain containing protein-coding 334-292 chr2 168378723 168379041 + 2 NA Intergenic Intergenic -77390 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 355-254 chr2 129564553 129564845 + 2 NA Intergenic L1MEg|LINE|L1 -290808 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 326-483 chr7 9120608 9120846 + 2 NA Intergenic Intergenic -513543 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 200-114 chr19 28730231 28730367 + 2 NA Intergenic LTR48B|LTR|ERV1 -2605 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 219-173 chr2 103034875 103035061 + 2 NA Intergenic L1MA9|LINE|L1 -50539 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 606-52 chr14 58952491 58952975 + 2 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 124445 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 447-279 chr8 122219379 122219782 + 2 NA Intergenic L1ME3C|LINE|L1 349064 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 341-15 chr1 67236911 67237234 + 2 NA intron (NM_144701, intron 8 of 10) AluSx1|SINE|Alu -70292 NR_047584 3595 Hs.479347 NM_001559 ENSG00000081985 IL12RB2 - interleukin 12 receptor subunit beta 2 protein-coding 474-312 chrX 17223483 17223745 + 2 NA Intergenic Intergenic -151586 NM_198270 4810 Hs.201623 NM_198270 ENSG00000188158 NHS CTRCT40|CXN|SCML1 NHS actin remodeling regulator protein-coding 230-238 chr3 117148854 117149040 + 2 NA Intergenic MER33|DNA|hAT-Charlie 227516 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 655-42 chr16 7093744 7094188 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -238879 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 339-136 chr12 118750798 118751030 + 2 NA Intergenic Intergenic 10765 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 355-510 chr8 119708672 119708912 + 2 NA Intergenic AluJo|SINE|Alu -35402 NM_001330600 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 265-339 chr6 91054416 91054589 + 2 NA Intergenic L1ME1|LINE|L1 -467158 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 390-137 chr16 83798496 83798724 + 2 NA 3' UTR (NM_001257, exon 14 of 14) 3' UTR (NM_001257, exon 14 of 14) 5366 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 318-439 chr5 52309363 52309614 + 2 NA Intergenic HERVK9-int|LTR|ERVK 301457 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 219-339 chr7 68589520 68589679 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 569346 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 232-87 chr13 70276218 70276422 + 2 NA Intergenic Intergenic -167827 NM_001286725 57626 Hs.508201 NM_020866 ENSG00000150361 KLHL1 MRP2 kelch like family member 1 protein-coding 379-255 chr5 2488334 2488635 + 2 NA Intergenic ORSL|DNA|hAT-Tip100 -176283 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 642-15 chr11 5176608 5177063 + 2 NA TTS (NM_001348257) TTS (NM_001348257) 1876 NM_001348257 283110 NM_001348257 OR52Z1 OR52Z1P olfactory receptor family 52 subfamily Z member 1 (gene/pseudogene) protein-coding 301-156 chr17 12325952 12326120 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -223932 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 345-542 chr8 135810639 135810838 + 2 NA Intergenic Intergenic 353282 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 321-472 chr5 103792021 103792228 + 2 NA Intergenic AluSp|SINE|Alu -229335 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 491-44 chr12 256365 256730 + 2 NA non-coding (NR_120482, exon 2 of 3) non-coding (NR_120482, exon 2 of 3) 752 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 361-330 chr4 127845883 127846220 + 2 NA Intergenic L1PA17|LINE|L1 -34842 NM_014264 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 344-28 chr1 185651719 185651984 + 2 NA Intergenic Intergenic -23363 NR_110793 101929093 Hs.535227 NR_110793 ENSG00000228309 LINC01350 GS1-204I12.1 long intergenic non-protein coding RNA 1350 ncRNA 307-374 chr5 15815450 15815611 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -119652 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 310-569 chrX 56152594 56152835 + 2 NA intron (NM_001324104, intron 2 of 6) intron (NM_001324104, intron 2 of 6) -79642 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 395-115 chr15 101403940 101404255 + 2 NA intron (NM_138325, intron 6 of 13) L1ME3F|LINE|L1 69660 NR_132373 105371027 NR_132373 ENSG00000259764 PCSK6-AS1 - PCSK6 antisense RNA 1 ncRNA 580-172 chr6 159835993 159836354 + 2 NA Intergenic AluSq10|SINE|Alu 35897 NM_001271862 154197 Hs.349077 NM_173516 ENSG00000146453 PNLDC1 HsPNLDC1 PARN like, ribonuclease domain containing 1 protein-coding 627-98 chr5 148272253 148272804 + 2 NA intron (NR_138538, intron 3 of 5) L1M5|LINE|L1 3734 NM_001040129 153218 Hs.483771 NM_001040129 ENSG00000214510 SPINK13 HBVDNAPTP1|HESPINTOR|LiESP6|SPINK5L3 serine peptidase inhibitor, Kazal type 13 (putative) protein-coding 335-387 chr4 81949410 81949595 + 2 NA Intergenic Intergenic 424489 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 514-294 chr9 71451538 71451919 + 2 NA Intergenic L1ME3A|LINE|L1 -4757 NM_001366142 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 401-343 chr9 28751497 28751859 + 2 NA intron (NM_001354574, intron 2 of 5) (CTATT)n|Simple_repeat|Simple_repeat -32373 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 401-44 chr10 107078006 107078304 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 86551 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 418-92 chr17 34454448 34454717 + 2 NA Intergenic Intergenic -91349 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 334-461 chr6 65403490 65403722 + 2 NA intron (NM_198283, intron 5 of 9) intron (NM_198283, intron 5 of 9) 102188 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 282-394 chr6 17058929 17059202 + 2 NA Intergenic Intergenic -43193 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 272-74 chr11 56134658 56134909 + 2 NA Intergenic Intergenic 2935 NM_001004064 81168 Hs.554523 NM_001004064 ENSG00000167822 OR8J3 OR11-173 olfactory receptor family 8 subfamily J member 3 protein-coding 124-72 chr9 38039355 38039440 + 2 NA intron (NM_003028, intron 1 of 5) intron (NM_003028, intron 1 of 5) 29830 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 381-187 chr2 47167019 47167252 + 2 NA intron (NM_001305625, intron 2 of 5) intron (NM_001305625, intron 2 of 5) 7072 NM_001305626 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 252-293 chr4 42058903 42059085 + 2 NA intron (NM_006345, intron 9 of 17) intron (NM_006345, intron 9 of 17) 68464 NM_006345 10463 Hs.479634 NM_006345 ENSG00000014824 SLC30A9 BILAPES|C4orf1|GAC63|HUEL|ZNT9 solute carrier family 30 member 9 protein-coding 489-156 chr2 227360998 227361474 + 2 NA TTS (NM_024795) TTS (NM_024795) 18070 NM_024795 79853 Hs.156652 NM_024795 ENSG00000168955 TM4SF20 PRO994|SLI5|TCCE518 transmembrane 4 L six family member 20 protein-coding 131-40 chr2 83613780 83613881 + 2 NA Intergenic Intergenic 91016 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 367-202 chr2 76729038 76729377 + 2 NA Intergenic LTR37B|LTR|ERV1 -256758 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 574-166 chr7 49583829 49584237 + 2 NA Intergenic Intergenic -189605 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 576-27 chr11 111068713 111069127 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger 28398 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 272-180 chr2 35825285 35825440 + 2 NA Intergenic Intergenic 353957 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 232-387 chr8 128260619 128260764 + 2 NA Intergenic L3|LINE|CR1 110575 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 281-189 chr2 5009921 5010076 + 2 NA Intergenic Intergenic -353776 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 301-135 chr15 70802489 70802688 + 2 NA Intergenic Intergenic -39030 NM_018003 55075 Hs.108049 NM_018003 ENSG00000137831 UACA NUCLING uveal autoantigen with coiled-coil domains and ankyrin repeats protein-coding 530-160 chr3 5690282 5690622 + 2 NA Intergenic Intergenic -440197 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 269-109 chr14 26609755 26610010 + 2 NA intron (NR_147061, intron 1 of 6) intron (NR_147061, intron 1 of 6) 11235 NR_147061 102725045 Hs.143441 NR_147061 LINC02588 C14orf22|NOVA1-AS1 long intergenic non-protein coding RNA 2588 ncRNA 235-54 chr10 120696120 120696325 + 2 NA Intergenic L1MA6|LINE|L1 98273 NR_103717 404216 Hs.196578 NM_001012711 ENSG00000177234 LINC01561 C10orf85 long intergenic non-protein coding RNA 1561 ncRNA 332-246 chr2 56201662 56201915 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -16018 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 225-341 chr8 4225266 4225450 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 769556 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 361-79 chr11 81994074 81994308 + 2 NA intron (NR_120571, intron 6 of 7) L1MC4|LINE|L1 -103355 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 204-18 chr1 234883610 234883790 + 2 NA Intergenic Intergenic 80299 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 650-4 chr1 95747697 95748093 + 2 NA Intergenic L1MC|LINE|L1 237779 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 605-66 chr20 35194165 35194554 + 2 NA intron (NM_001355008, intron 4 of 14) L2a|LINE|L2 22287 NM_006404 10544 Hs.647450 NM_006404 ENSG00000101000 PROCR CCCA|CCD41|EPCR protein C receptor protein-coding 307-355 chr4 124773854 124774120 + 2 NA Intergenic L1PB2|LINE|L1 -61255 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 258-149 chr15 93536382 93536574 + 2 NA Intergenic L1MC3|LINE|L1 -320082 NR_120321 101927153 Hs.371900 NR_120321 LINC02207 - long intergenic non-protein coding RNA 2207 ncRNA 223-79 chr13 110658055 110658192 + 2 NA intron (NM_024537, intron 9 of 14) L1MC5|LINE|L1 42539 NM_018210 55739 Hs.408324 NM_018210 ENSG00000213995 NAXD CARKD|LP3298|PEBEL2 NAD(P)HX dehydratase protein-coding 316-486 chr6 66517326 66517555 + 2 NA Intergenic L1MCb|LINE|L1 729561 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 499-244 chr7 62357938 62358282 + 2 NA Intergenic Intergenic 945946 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 262-428 chr8 81322582 81322787 + 2 NA Intergenic MER67C|LTR|ERV1 42148 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 458-93 chr16 25898874 25899216 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) -126192 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 452-45 chr11 77836480 77836908 + 2 NA intron (NM_001316960, intron 2 of 4) AluSp|SINE|Alu -4444 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 397-356 chr9 78729077 78729360 + 2 NA Intergenic L1MA6|LINE|L1 416448 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 335-414 chr5 15880294 15880522 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -54774 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 266-343 chr5 135906392 135906576 + 2 NA Intergenic L1MC3|LINE|L1 -10643 NM_000590 3578 Hs.960 NM_000590 ENSG00000145839 IL9 HP40|IL-9|P40 interleukin 9 protein-coding 611-85 chr2 209644690 209645125 + 2 NA intron (NM_001039538, intron 4 of 14) intron (NM_001039538, intron 4 of 14) 65228 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 336-202 chr16 78082896 78083196 + 2 NA Intergenic Intergenic -16608 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 262-402 chr7 68345733 68345926 + 2 NA Intergenic L1MEg|LINE|L1 325576 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 350-333 chr3 189852703 189852933 + 2 NA intron (NM_003722, intron 4 of 13) intron (NM_003722, intron 4 of 13) 22896 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 622-90 chr3 134298064 134298660 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -15214 NR_146711 105374119 NR_146711 ENSG00000240006 LINC02004 - long intergenic non-protein coding RNA 2004 ncRNA 317-281 chr20 55566341 55566582 + 2 NA Intergenic L1MB2|LINE|L1 -139264 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 160-119 chr8 86243386 86243487 + 2 NA Intergenic L1MC2|LINE|L1 -13055 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 134-81 chr7 23885803 23885900 + 2 NA Intergenic L2a|LINE|L2 175632 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 147-74 chr5 81913949 81914064 + 2 NA Intergenic L1M4|LINE|L1 -58017 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 405-209 chr3 118073467 118073767 + 2 NA Intergenic L1MA3|LINE|L1 -382692 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 515-271 chr8 140074898 140075287 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) 25443 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 675-43 chr2 98501351 98501979 + 2 NA intron (NM_001351428, intron 1 of 24) intron (NM_001351428, intron 1 of 24) 55655 NM_001351426 3631 Hs.469386 NM_001566 ENSG00000040933 INPP4A INPP4|TVAS1 inositol polyphosphate-4-phosphatase type I A protein-coding 441-235 chr7 3076563 3076859 + 2 NA Intergenic Intergenic -32844 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 487-52 chr11 13427618 13427922 + 2 NA intron (NM_001297741, intron 1 of 7) L1ME1|LINE|L1 12509 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 466-243 chr7 27239722 27240084 + 2 NA Intergenic Intergenic -2899 NM_001304519 2128 Hs.369879 NM_001989 ENSG00000106038 EVX1 EVX-1 even-skipped homeobox 1 protein-coding 362-299 chr4 41734500 41734808 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 14316 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 701-73 chr5 4494346 4494974 + 2 NA Intergenic L1ME4b|LINE|L1 -278821 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 298-193 chr19 57688064 57688286 + 2 NA exon (NM_138347, exon 3 of 3) exon (NM_138347, exon 3 of 3) 6198 NR_073102 90233 Hs.109540 NM_138347 ENSG00000204519 ZNF551 - zinc finger protein 551 protein-coding 380-111 chr13 105483181 105483520 + 2 NA intron (NM_172370, intron 3 of 4) L1ME1|LINE|L1 17134 NM_001161812 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 324-511 chr7 119164699 119164881 + 2 NA Intergenic L1MA4A|LINE|L1 742585 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 592-179 chr8 128541336 128541828 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 23097 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 208-21 chr10 57041302 57041436 + 2 NA Intergenic Intergenic 263190 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 210-298 chr8 126765893 126766071 + 2 NA Intergenic Intergenic -207504 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 514-275 chr7 109574145 109574523 + 2 NA Intergenic Intergenic 385879 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 316-292 chr2 143611213 143611457 + 2 NA intron (NM_018460, intron 11 of 13) intron (NM_018460, intron 11 of 13) -325732 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 361-389 chr6 62659151 62659479 + 2 NA Intergenic Tigger11a|DNA|TcMar-Tigger -373088 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 336-299 chr2 180474357 180474538 + 2 NA Intergenic Intergenic -217657 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 658-121 chr8 77885524 77885969 + 2 NA Intergenic L1MC5a|LINE|L1 435049 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 453-46 chr12 17364775 17365094 + 2 NA Intergenic Intergenic 224144 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 218-132 chr18 9148783 9148960 + 2 NA intron (NM_001204056, intron 1 of 11) L2c|LINE|L2 11308 NM_001204056 23253 Hs.464585 NM_015208 ENSG00000101745 ANKRD12 ANCO-2|ANCO1|GAC-1|Nbla00144 ankyrin repeat domain 12 protein-coding 305-77 chr10 101949572 101949795 + 2 NA intron (NM_024541, intron 22 of 25) L1MEf|LINE|L1 -105763 NM_173197 30819 Hs.97044 NM_014591 ENSG00000120049 KCNIP2 KCHIP2 potassium voltage-gated channel interacting protein 2 protein-coding 306-351 chr4 44916806 44917069 + 2 NA Intergenic Intergenic -190303 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 270-406 chr8 122429660 122429872 + 2 NA intron (NR_131202, intron 2 of 3) L1PA16|LINE|L1 138878 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 228-56 chr11 41160774 41160945 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 298777 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 279-353 chr6 2114384 2114629 + 2 NA intron (NM_001253846, intron 4 of 10) intron (NM_001253846, intron 4 of 10) 61485 NM_001253846 2762 Hs.144496 NM_001500 ENSG00000112699 GMDS GMD|SDR3E1 GDP-mannose 4,6-dehydratase protein-coding 548-165 chr4 80710694 80711046 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -319838 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 350-538 chr8 127157039 127157281 + 2 NA Intergenic L1PB1|LINE|L1 40467 NR_120364 103021165 Hs.573407 NR_120364 CASC19 CARLO6|CARLo-6|LINC01245 cancer susceptibility 19 ncRNA 279-44 chr10 61901240 61901443 + 2 NA promoter-TSS (NM_032199) promoter-TSS (NM_032199) -358 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 451-223 chr7 112808650 112808998 + 2 NA Intergenic L1ME3G|LINE|L1 -18401 NR_109840 64418 Hs.606345 NM_022484 ENSG00000146802 TMEM168 - transmembrane protein 168 protein-coding 188-197 chr7 123491597 123491769 + 2 NA intron (NR_104244, intron 7 of 13) L1ME2z|LINE|L1 41265 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 203-77 chr15 60625359 60625544 + 2 NA intron (NM_002943, intron 1 of 10) L1ME4b|LINE|L1 2079 NM_002943 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 383-108 chr14 51507422 51507779 + 2 NA intron (NM_001042481, intron 1 of 14) intron (NM_001042481, intron 1 of 14) 18472 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 350-83 chr11 133595010 133595333 + 2 NA Intergenic MIRb|SINE|MIR -62670 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 272-402 chr6 145463901 145464130 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 222862 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 297-9 chr1 56147983 56148159 + 2 NA Intergenic MIRb|SINE|MIR 202984 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 371-326 chr5 150977875 150978125 + 2 NA Intergenic Intergenic -31416 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 316-483 chr6 53603387 53603589 + 2 NA Intergenic Intergenic -24892 NR_125841 101927171 Hs.334005 NR_125841 ENSG00000235899 LINC01564 TCONS_00011314|XLOC_005327 long intergenic non-protein coding RNA 1564 ncRNA 855-2 chr1 168821911 168822571 + 2 NA Intergenic HAL1|LINE|L1 35300 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 617-119 chr6 147789315 147789902 + 2 NA Intergenic L1MC3|LINE|L1 280918 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 258-256 chr3 42955911 42956082 + 2 NA Intergenic Intergenic -19211 NR_122033 100506275 Hs.517918 NR_122033 ENSG00000206552 KRBOX1-AS1 - KRBOX1 antisense RNA 1 ncRNA 601-141 chr7 64518027 64518379 + 2 NA Intergenic L1MA8|LINE|L1 44868 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 736-57 chr3 159457520 159458073 + 2 NA intron (NM_001197108, intron 1 of 6) MER44A|DNA|TcMar-Tigger 175150 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 390-130 chr16 51069328 51069664 + 2 NA intron (NR_039672, intron 2 of 6) MLT1K|LTR|ERVL-MaLR 51738 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 486-104 chr16 25448150 25448516 + 2 NA Intergenic L1M7|LINE|L1 -190488 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 270-127 chr15 68828767 68828961 + 2 NA Intergenic Intergenic -7969 NM_006305 8125 Hs.458747 NM_006305 ENSG00000140350 ANP32A C15orf1|HPPCn|I1PP2A|LANP|MAPM|PHAP1|PHAPI|PP32 acidic nuclear phosphoprotein 32 family member A protein-coding 354-247 chr2 211108064 211108275 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 490598 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 414-260 chr5 21662430 21662647 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 203058 NR_027028 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 352-29 chr1 219463280 219463470 + 2 NA intron (NR_135822, intron 2 of 3) MIRc|SINE|MIR 93949 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 178-151 chr8 121320927 121321032 + 2 NA Intergenic MIRb|SINE|MIR -318367 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 566-151 chr5 8937247 8937617 + 2 NA Intergenic L1PA13|LINE|L1 97700 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 356-218 chr19 40129043 40129363 + 2 NA Intergenic Intergenic -38260 NM_001142579 284323 Hs.115140 NM_001010880 ENSG00000197782 ZNF780A ZNF780 zinc finger protein 780A protein-coding 370-51 chr10 70179850 70180137 + 2 NA Intergenic L1MC3|LINE|L1 -9479 NM_020150 56681 Hs.499960 NM_020150 ENSG00000079332 SAR1A SAR1|SARA1|Sara|masra2 secretion associated Ras related GTPase 1A protein-coding 583-101 chr20 40077188 40077630 + 2 NA Intergenic L1M5|LINE|L1 72948 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 588-45 chr15 69459321 69459839 + 2 NA Intergenic AluJo|SINE|Alu 6762 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 228-359 chr8 139754079 139754225 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -51029 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 245-67 chr11 26813253 26813394 + 2 NA Intergenic LTR40a|LTR|ERVL -91263 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 258-387 chr8 82496397 82496559 + 2 NA Intergenic Intergenic -415626 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 184-42 chr12 2513920 2514075 + 2 NA intron (NM_199460, intron 9 of 49).2 intron (NM_199460, intron 9 of 49).2 158223 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 316-277 chr2 105690972 105691268 + 2 NA Intergenic Intergenic -53792 NM_003581 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 355-219 chr19 37385385 37385636 + 2 NA intron (NM_032453, intron 4 of 4) intron (NM_032453, intron 4 of 4) 14411 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 841-41 chr8 55282395 55282990 + 2 NA intron (NM_052898, intron 1 of 2) MSTB|LTR|ERVL-MaLR 172629 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 319-4 chr1 47354092 47354279 + 2 NA intron (NM_001136140, intron 1 of 4) AluJb|SINE|Alu 20395 NR_046394 51727 Hs.731647 NM_016308 ENSG00000162368 CMPK1 CK|CMK|CMPK|UMK|UMP-CMPK|UMPK cytidine/uridine monophosphate kinase 1 protein-coding 268-235 chr3 7368015 7368260 + 2 NA intron (NM_000844, intron 4 of 9) intron (NM_000844, intron 4 of 9) 167147 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 350-128 chr14 33702781 33702972 + 2 NA intron (NM_001165893, intron 5 of 10) intron (NM_001165893, intron 5 of 10) -6061 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 368-305 chr3 137379571 137379893 + 2 NA Intergenic Intergenic -384583 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 315-21 chr1 111217059 111217261 + 2 NA Intergenic Intergenic -10499 NM_001025197 1117 Hs.514840 NM_004000 ENSG00000064886 CHI3L2 CHIL2|YKL-39|YKL39 chitinase 3 like 2 protein-coding 348-144 chr14 66968348 66968549 + 2 NA intron (NM_001024218, intron 8 of 21) intron (NM_001024218, intron 8 of 21) -220992 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 186-177 chr9 88453895 88454041 + 2 NA intron (NM_006717, intron 3 of 5) intron (NM_006717, intron 3 of 5) 65524 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 242-361 chr7 21168632 21168797 + 2 NA Intergenic Intergenic -259369 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 318-254 chr2 34863121 34863348 + 2 NA Intergenic Intergenic 185677 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 593-105 chr4 67246064 67246571 + 2 NA Intergenic Intergenic 175683 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 343-349 chr3 110368461 110368717 + 2 NA Intergenic HERVL40-int|LTR|ERVL 701370 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 314-368 chr3 26351384 26351590 + 2 NA Intergenic L1M5|LINE|L1 -271319 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 283-63 chr10 92234324 92234514 + 2 NA intron (NM_001178137, intron 2 of 9) intron (NM_001178137, intron 2 of 9) 8860 NM_001178137 22849 Hs.131683 NM_014912 ENSG00000107864 CPEB3 - cytoplasmic polyadenylation element binding protein 3 protein-coding 227-212 chr21 25236472 25236660 + 2 NA Intergenic L1MB2|LINE|L1 195135 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 335-157 chr14 46101628 46101808 + 2 NA intron (NR_102702, intron 1 of 3) MER33|DNA|hAT-Charlie 37559 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 216-342 chr8 126125712 126125921 + 2 NA Intergenic L1M4|LINE|L1 -174619 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 242-143 chr18 3800661 3800838 + 2 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 44609 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 301-410 chr6 167087986 167088201 + 2 NA Intergenic L1MEf|LINE|L1 -23714 NM_004367 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 347-498 chr8 55289175 55289349 + 2 NA intron (NM_052898, intron 1 of 2) AluSx1|SINE|Alu 166059 NR_027765 100133234 Hs.729852 NR_027765 ENSG00000248522 SBF1P1 - SET binding factor 1 pseudogene 1 pseudo 311-396 chr5 17310998 17311301 + 2 NA Intergenic LTR12E|LTR|ERV1 76161 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 592-189 chrX 86442773 86443279 + 2 NA intron (NM_001139515, intron 2 of 11) L1MA6|LINE|L1 180058 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 145-24 chr13 47231954 47232086 + 2 NA Intergenic Intergenic -334944 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 433-73 chr13 66200716 66201042 + 2 NA Intergenic Intergenic -17371 NR_039853 100616205 NR_039853 ENSG00000263561 MIR4704 - microRNA 4704 ncRNA 198-21 chr10 37907626 37907761 + 2 NA Intergenic L1ME2|LINE|L1 -49590 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 234-219 chr21 28041471 28041618 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -6870 NR_126010 284825 Hs.651529 NR_126010 ENSG00000232079 LINC01697 - long intergenic non-protein coding RNA 1697 ncRNA 203-261 chrX 144357345 144357490 + 2 NA Intergenic Intergenic 473346 NM_001012989 389898 Hs.585177 NM_001012989 ENSG00000276380 UBE2NL Li174 ubiquitin conjugating enzyme E2 N like (gene/pseudogene) protein-coding 569-22 chr10 49067534 49067948 + 2 NA intron (NM_001031746, intron 4 of 7) MLT1B|LTR|ERVL-MaLR 47781 NM_144984 196740 Hs.522928 NM_144984 ENSG00000165633 VSTM4 C10orf72 V-set and transmembrane domain containing 4 protein-coding 470-227 chr5 153173444 153173840 + 2 NA Intergenic L1MA9|LINE|L1 -201293 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 396-356 chr8 124239668 124240027 + 2 NA intron (NR_125420, intron 1 of 2) L1PA7|LINE|L1 7551 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 409-300 chr8 127460656 127460987 + 2 NA intron (NR_024393, intron 4 of 4) intron (NR_024393, intron 4 of 4) 21318 NR_024393 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 517-284 chr9 16259420 16259903 + 2 NA intron (NM_001364979, intron 1 of 3) LTR88b|LTR|Gypsy? -6554 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 396-304 chr6 17889521 17889894 + 2 NA intron (NM_001105567, intron 3 of 36) MER2|DNA|TcMar-Tigger 97928 NM_001105567 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 402-123 chr18 23137283 23137610 + 2 NA intron (NM_001100619, intron 1 of 9) intron (NM_001100619, intron 1 of 9) 1683 NM_001100619 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 461-142 chr2 145426388 145426764 + 2 NA Intergenic L1MA9|LINE|L1 758609 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 240-379 chr6 67970981 67971184 + 2 NA Intergenic Intergenic -84269 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 257-328 chr5 95355323 95355503 + 2 NA Intergenic Intergenic -35953 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 255-100 chr14 24508646 24508837 + 2 NA promoter-TSS (NM_001308083) promoter-TSS (NM_001308083) -476 NM_001308083 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 268-240 chr3 67119704 67119877 + 2 NA Intergenic Intergenic -105674 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 322-261 chr2 115186183 115186472 + 2 NA intron (NM_001321906, intron 2 of 26) L2b|LINE|L2 24172 NM_001004360 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 318-515 chr7 64998434 64998665 + 2 NA intron (NM_001007253, intron 1 of 1) HERV3-int|LTR|ERV1 -7513 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 309-257 chr2 107124908 107125207 + 2 NA Intergenic Intergenic 224468 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 403-27 chr10 41718742 41719116 + 2 NA Intergenic ALR/Alpha|Satellite|centr 649116 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 327-120 chr12 88007703 88007880 + 2 NA intron (NM_001363616, intron 3 of 11) Charlie2b|DNA|hAT-Charlie 21610 NM_001363616 160419 Hs.112930 NM_152589 ENSG00000165805 C12orf50 - chromosome 12 open reading frame 50 protein-coding 549-157 chr5 4273415 4273906 + 2 NA Intergenic Intergenic -499821 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 292-171 chr17 61169659 61169814 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 197968 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 664-55 chr2 98971511 98972058 + 2 NA Intergenic L1MA4|LINE|L1 -35559 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 394-74 chr12 10644853 10645210 + 2 NA intron (NM_018423, intron 1 of 10) L2b|LINE|L2 29021 NM_018423 55359 Hs.24979 NM_018423 ENSG00000060140 STYK1 NOK|SuRTK106 serine/threonine/tyrosine kinase 1 protein-coding 543-81 chr15 49940383 49940859 + 2 NA intron (NR_073597, intron 14 of 26) intron (NR_073597, intron 14 of 26) 172758 NR_073598 79895 Hs.511311 NM_024837 ENSG00000104043 ATP8B4 ATPIM ATPase phospholipid transporting 8B4 (putative) protein-coding 350-219 chr2 53316740 53316929 + 2 NA Intergenic Intergenic -450949 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 341-329 chr3 51345848 51346123 + 2 NA intron (NM_004947, intron 38 of 52) L1MC5|LINE|L1 -39306 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 359-47 chr10 27664051 27664357 + 2 NA Intergenic L1M7|LINE|L1 -80411 NR_121652 101929202 Hs.568843 NR_121652 MKX-AS1 - MKX antisense RNA 1 ncRNA 299-88 chr11 112669901 112670161 + 2 NA Intergenic L1ME3B|LINE|L1 -114229 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 525-237 chr7 46739232 46739599 + 2 NA Intergenic Intergenic -42293 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 328-276 chr2 116293201 116293376 + 2 NA Intergenic L1MB1|LINE|L1 949473 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 240-61 chr10 81858320 81858513 + 2 NA Intergenic L1MA9|LINE|L1 -16778 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 434-304 chr8 137120324 137120655 + 2 NA Intergenic Intergenic 293099 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 187-83 chr2 124438420 124438572 + 2 NA intron (NM_130773, intron 5 of 23) intron (NM_130773, intron 5 of 23) 413209 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 334-96 chr11 100739950 100740227 + 2 NA intron (NM_001367945, intron 1 of 25) (T)n|Simple_repeat|Simple_repeat -52133 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 726-7 chr10 25646596 25647061 + 2 NA Intergenic Intergenic -4884 NR_108068 101929052 Hs.128298 NR_108067 ENSG00000280809 LINC00836 - long intergenic non-protein coding RNA 836 ncRNA 714-46 chr21 29527693 29528187 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 31893 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 215-279 chr6 82124065 82124241 + 2 NA Intergenic MamGypLTR1d|LTR|Gypsy -22388 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 262-84 chr11 87510433 87510687 + 2 NA Intergenic Intergenic 208851 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 601-85 chr21 42606472 42606901 + 2 NA intron (NR_131192, intron 1 of 1) HERV35I-int|LTR|ERV1 8409 NR_131192 101928233 Hs.534827 NR_131192 ENSG00000225431 LINC01671 - long intergenic non-protein coding RNA 1671 ncRNA 150-3 chr1 87831850 87831974 + 2 NA Intergenic Intergenic -460257 NR_038324 100505768 Hs.125247 NR_038324 ENSG00000227290 LINC01364 - long intergenic non-protein coding RNA 1364 ncRNA 405-76 chr13 50923321 50923682 + 2 NA intron (NM_001142279, intron 1 of 9) L1M4|LINE|L1 -12789 NR_046552 100874255 Hs.741501 NR_046552 RNASEH2B-AS1 - RNASEH2B antisense RNA 1 ncRNA 389-173 chr2 77284802 77285046 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 237452 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 276-381 chr5 128523511 128523719 + 2 NA intron (NM_001999, intron 4 of 64) L2a|LINE|L2 14630 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 459-287 chr7 111835301 111835731 + 2 NA intron (NM_001363540, intron 25 of 52) intron (NM_001363540, intron 25 of 52) 27011 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 202-269 chr9 30284261 30284407 + 2 NA Intergenic Intergenic 124120 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 314-59 chr10 27856809 27857047 + 2 NA intron (NM_001290021, intron 12 of 13) AluSq2|SINE|Alu -111109 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 274-132 chr14 78529868 78530118 + 2 NA intron (NM_004796, intron 1 of 16) L2a|LINE|L2 126274 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 368-161 chr15 61687545 61687813 + 2 NA Intergenic Intergenic -42239 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 332-73 chr10 106147073 106147299 + 2 NA intron (NR_134330, intron 1 of 4) MER58A|DNA|hAT-Charlie 7021 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 434-33 chr10 48284442 48284729 + 2 NA Intergenic MIR|SINE|MIR -9889 NM_001018071 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 337-556 chr8 126852726 126853032 + 2 NA Intergenic Intergenic -160275 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 231-196 chr21 20240965 20241151 + 2 NA Intergenic L1MA5|LINE|L1 17627 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 374-136 chr17 5093050 5093352 + 2 NA 3' UTR (NM_153018, exon 2 of 2) 3' UTR (NM_153018, exon 2 of 2) 14734 NM_153018 124961 Hs.48832 NM_153018 ENSG00000180787 ZFP3 ZNF752 ZFP3 zinc finger protein protein-coding 271-226 chr2 237284925 237285159 + 2 NA Intergenic L2|LINE|L2 129122 NM_057166 1293 Hs.233240 NM_004369 ENSG00000163359 COL6A3 BTHLM1|DYT27|UCMD1 collagen type VI alpha 3 chain protein-coding 607-118 chr5 94545851 94546224 + 2 NA intron (NM_001145678, intron 2 of 20) L1M1|LINE|L1 72567 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 265-383 chr8 26491380 26491608 + 2 NA Intergenic Intergenic 22378 NM_007257 10687 Hs.591838 NM_007257 ENSG00000240694 PNMA2 MA2|MM2|RGAG2 PNMA family member 2 protein-coding 274-204 chr2 58435968 58436180 + 2 NA Intergenic Intergenic -84679 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 335-34 chr1 224522721 224523043 + 2 NA intron (NM_001322304, intron 2 of 6) L1ME3A|LINE|L1 88033 NR_136291 149111 Hs.731723 NM_152495 ENSG00000143786 CNIH3 CNIH-3 cornichon family AMPA receptor auxiliary protein 3 protein-coding 426-163 chr20 54285840 54286175 + 2 NA Intergenic Intergenic 77920 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 267-66 chr11 79527674 79527829 + 2 NA Intergenic Intergenic -86721 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 146-87 chr8 59684810 59684894 + 2 NA Intergenic Intergenic 565642 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 348-539 chr8 132548095 132548310 + 2 NA Intergenic Intergenic 13277 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 275-315 chr6 104290246 104290506 + 2 NA Intergenic Intergenic 569170 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 782-64 chr7 121618197 121618787 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -222124 NM_001040020 10447 Hs.434053 NM_014888 ENSG00000196937 FAM3C GS3786|ILEI family with sequence similarity 3 member C protein-coding 339-178 chr15 70334353 70334663 + 2 NA Intergenic L1ME2|LINE|L1 171420 NR_146562 105370880 NR_146562 ENSG00000259473 LINC02205 - long intergenic non-protein coding RNA 2205 ncRNA 305-380 chr4 48687110 48687407 + 2 NA intron (NM_015030, intron 2 of 63) intron (NM_015030, intron 2 of 63) 93041 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 225-227 chr3 143422933 143423105 + 2 NA intron (NM_173653, intron 12 of 15) L1PA16|LINE|L1 80773 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 402-189 chr20 55832005 55832292 + 2 NA Intergenic L1ME4a|LINE|L1 173371 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 290-244 chr20 22095501 22095705 + 2 NA Intergenic L1MC5|LINE|L1 41513 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 386-112 chr15 26368435 26368652 + 2 NA Intergenic MIRb|SINE|MIR 252730 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 341-510 chr7 155332068 155332328 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 34320 NM_005542 3638 Hs.520819 NM_005542 ENSG00000186480 INSIG1 CL6 insulin induced gene 1 protein-coding 350-298 chr3 1693589 1693838 + 2 NA Intergenic L1M2|LINE|L1 -405090 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 153-34 chr15 64068492 64068629 + 2 NA Intergenic Intergenic -22075 NM_014326 23604 Hs.237886 NM_014326 ENSG00000035664 DAPK2 DRP-1|DRP1 death associated protein kinase 2 protein-coding 337-194 chr16 71783658 71783835 + 2 NA intron (NM_001128, intron 2 of 22) MER102b|DNA|hAT-Charlie 25088 NM_001030007 164 Hs.461253 NM_001128 ENSG00000166747 AP1G1 ADTG|CLAPG1 adaptor related protein complex 1 subunit gamma 1 protein-coding 252-24 chr1 210227791 210227954 + 2 NA Intergenic Intergenic -4924 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 285-433 chr8 130387596 130387843 + 2 NA intron (NM_001247996, intron 2 of 30) intron (NM_001247996, intron 2 of 30) 55941 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 504-134 chr2 114611660 114612043 + 2 NA intron (NM_001321908, intron 2 of 25) MIRb|SINE|MIR 150274 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 385-136 chr17 65409285 65409503 + 2 NA Intergenic L1MA5|LINE|L1 -48147 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 284-137 chr15 62664272 62664505 + 2 NA intron (NM_015059, intron 6 of 55) L1ME3Cz|LINE|L1 17077 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 388-44 chr10 53184266 53184543 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -412704 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 252-308 chr4 120454997 120455210 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -388255 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 330-527 chr8 115053400 115053679 + 2 NA Intergenic Intergenic 614474 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 317-121 chr12 132921730 132922007 + 2 NA 3' UTR (NM_183238, exon 5 of 5) 3' UTR (NM_183238, exon 5 of 5) 34026 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 593-30 chr12 13617128 13617470 + 2 NA intron (NM_000834, intron 4 of 12) intron (NM_000834, intron 4 of 12) -240554 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 326-76 chr10 75268876 75269075 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -27408 NR_038223 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 206 chr1 29436868 29437010 + 2 NA Intergenic MSTA1-int|LTR|ERVL-MaLR -86825 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 254-90 chr12 116651375 116651530 + 2 NA Intergenic Intergenic 86617 NM_001353623 79794 Hs.120170 NM_024738 ENSG00000111412 C12orf49 - chromosome 12 open reading frame 49 protein-coding 306-235 chr2 63195999 63196235 + 2 NA intron (NR_148705, intron 13 of 16) Tigger2|DNA|TcMar-Tigger -76575 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 335-338 chr3 22331613 22331838 + 2 NA Intergenic Intergenic 374586 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 289-399 chr5 163230235 163230428 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -207240 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 316-248 chr2 10945005 10945295 + 2 NA Intergenic Intergenic 33216 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 474-108 chr17 30362873 30363164 + 2 NA Intergenic Intergenic -15909 NM_001304 1362 Hs.446079 NM_001304 ENSG00000108582 CPD GP180 carboxypeptidase D protein-coding 350-86 chr12 12650819 12651013 + 2 NA Intergenic MER41A|LTR|ERV1 39040 NM_001310 1389 Hs.591156 NM_001310 ENSG00000111269 CREBL2 - cAMP responsive element binding protein like 2 protein-coding 220-182 chr2 155059607 155059784 + 2 NA Intergenic Intergenic 361000 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 306-242 chr2 98172841 98173035 + 2 NA intron (NM_001345864, intron 2 of 21) intron (NM_001345864, intron 2 of 21) 23405 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 291-11 chr1 91981205 91981427 + 2 NA exon (NM_001242807, exon 10 of 18) exon (NM_001242807, exon 10 of 18) 29164 NM_001726 676 Hs.482520 NM_001726 ENSG00000137948 BRDT BRD6|CT9|SPGF21 bromodomain testis associated protein-coding 227-129 chr16 71566769 71566935 + 2 NA 3' UTR (NM_000353, exon 12 of 12) 3' UTR (NM_000353, exon 12 of 12) 1063 NR_103851 100132529 Hs.710296 NR_103851 ENSG00000260886 TAT-AS1 - TAT antisense RNA 1 ncRNA 230-73 chr12 12425877 12426036 + 2 NA intron (NM_001300742, intron 2 of 3).2 MIRb|SINE|MIR 68878 NM_001330356 118426 Hs.504805 NM_058169 ENSG00000165714 BORCS5 LOH12CR1|LOH1CR12 BLOC-1 related complex subunit 5 protein-coding 743-16 chr11 97967666 97968195 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 -1053019 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 269-181 chr2 30635298 30635509 + 2 NA intron (NM_182551, intron 6 of 6) intron (NM_182551, intron 6 of 6) 172043 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 376-276 chr4 54597320 54597618 + 2 NA Intergenic L1MA10|LINE|L1 9662 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 269-107 chr13 89903639 89903835 + 2 NA Intergenic L1MCc|LINE|L1 215980 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 459-165 chr20 54761684 54762032 + 2 NA Intergenic Intergenic 286265 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 269-412 chr8 121150972 121151174 + 2 NA Intergenic L2a|LINE|L2 -339027 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 587-10 chr1 199986320 199986702 + 2 NA Intergenic AluSx1|SINE|Alu -41199 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 234-256 chr3 144094597 144094752 + 2 NA Intergenic L1M5|LINE|L1 121593 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 506-173 chr21 29246068 29246465 + 2 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -52656 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 214-12 chr1 60673136 60673323 + 2 NA intron (NR_110628, intron 4 of 5) Charlie26a|DNA|hAT-Charlie -50544 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 231-16 chr1 111936918 111937118 + 2 NA intron (NM_172198, intron 2 of 6) L2b|LINE|L2 27361 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 454-226 chr4 44902754 44903121 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -176303 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 522-203 chr5 26005303 26005686 + 2 NA Intergenic L1MC4|LINE|L1 814541 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 433-67 chr12 118516596 118516960 + 2 NA Intergenic Intergenic 140223 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 281-374 chr5 151408649 151408904 + 2 NA Intergenic Intergenic -28270 NM_001308151 206358 Hs.269004 NM_078483 ENSG00000123643 SLC36A1 Dct1|LYAAT1|PAT1|TRAMD3 solute carrier family 36 member 1 protein-coding 696-23 chr11 109776315 109776776 + 2 NA Intergenic MER77|LTR|ERVL -316847 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 283-27 chr1 175055034 175055293 + 2 NA Intergenic Intergenic -12670 NM_022093 63923 Hs.156369 NM_022093 ENSG00000120332 TNN TN-W tenascin N protein-coding 248-243 chr3 62050441 62050598 + 2 NA intron (NM_002841, intron 4 of 29) Tigger3a|DNA|TcMar-Tigger 268428 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 394-133 chr17 34902253 34902571 + 2 NA Intergenic MamRep605|LTR?|LTR? 59048 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 274-123 chr14 47358524 47358674 + 2 NA intron (NM_001113498, intron 1 of 16) L1MA9|LINE|L1 -15353 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 340-528 chr8 60227581 60227797 + 2 NA intron (NM_001321839, intron 3 of 7) intron (NM_001321839, intron 3 of 7) 53711 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 228-204 chr21 45212023 45212168 + 2 NA intron (NR_027674, intron 9 of 11) intron (NR_027674, intron 9 of 11) -22245 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 194-6 chr1 50259369 50259522 + 2 NA Intergenic Intergenic 149612 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 410-102 chr16 51857010 51857338 + 2 NA Intergenic Intergenic 94655 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 232-90 chr13 103298338 103298548 + 2 NA Intergenic Intergenic -126757 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 327-403 chr5 79140372 79140582 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR 28668 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 369-321 chr5 39329562 39329765 + 2 NA intron (NM_001737, intron 5 of 10) intron (NM_001737, intron 5 of 10) 34832 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 157-113 chr6 122776829 122776907 + 2 NA intron (NM_001319042, intron 1 of 3) intron (NM_001319042, intron 1 of 3) -2607 NM_001319039 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 218-72 chr12 76180934 76181074 + 2 NA Intergenic (CCTT)n|Simple_repeat|Simple_repeat -78879 NR_146531 105369848 NR_146531 LNCOG LINC02407|lncRNA-OG lncRNA osteogenesis associated ncRNA 226-179 chr2 125142119 125142331 + 2 NA Intergenic L1MEg|LINE|L1 975760 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 384-63 chr11 103181540 103181818 + 2 NA intron (NM_001377, intron 39 of 88) intron (NM_001377, intron 39 of 88) 72253 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 322-168 chr15 27712960 27713206 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 386232 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 289-216 chr2 51283005 51283280 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 250541 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 415-261 chr7 110145041 110145332 + 2 NA Intergenic Intergenic -184973 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 313-463 chr6 23947903 23948134 + 2 NA Intergenic L1MB1|LINE|L1 -178197 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 456-335 chr9 25090141 25090510 + 2 NA Intergenic Intergenic -544428 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 509-196 chr5 76007667 76008057 + 2 NA Intergenic Intergenic -75521 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 481-66 chr12 17999678 18000012 + 2 NA Intergenic L1M3e|LINE|L1 90348 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 272-364 chr5 147816676 147816904 + 2 NA Intergenic Intergenic 22441 NM_001354966 6690 Hs.407856 NM_003122 ENSG00000164266 SPINK1 PCTT|PSTI|Spink3|TATI|TCP serine peptidase inhibitor, Kazal type 1 protein-coding 293-458 chr8 129142345 129142529 + 2 NA Intergenic L2b|LINE|L2 98803 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 636-127 chr6 53946682 53947134 + 2 NA intron (NR_125842, intron 1 of 3) L1PA13|LINE|L1 16926 NR_125842 101927189 Hs.453592 NR_125842 ENSG00000236740 LOC101927189 - uncharacterized LOC101927189 ncRNA 569-96 chr2 81507321 81507711 + 2 NA Intergenic L1M5|LINE|L1 -40570 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 315-341 chr4 71207372 71207594 + 2 NA intron (NM_001098484, intron 1 of 25) intron (NM_001098484, intron 1 of 25) 20197 NM_001134742 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 224-252 chr5 58529800 58529989 + 2 NA TTS (NR_039639) TTS (NR_039639) 215 NR_039639 100616339 NR_039639 ENSG00000265699 MIR548AE2 - microRNA 548ae-2 ncRNA 292-286 chr3 76211418 76211668 + 2 NA Intergenic Intergenic -425994 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 245-329 chr7 66969112 66969266 + 2 NA Intergenic AluJo|SINE|Alu 26397 NM_016038 51119 Hs.110445 NM_016038 ENSG00000126524 SBDS CGI-97|SDS|SWDS SBDS ribosome maturation factor protein-coding 425-142 chr2 121548906 121549301 + 2 NA intron (NM_015282, intron 2 of 38) L1PA14|LINE|L1 18223 NR_023343 100151683 Hs.689638 NR_023343 ENSG00000264229 RNU4ATAC MOPD1|RFMN|RNU4ATAC1|TALS|U4ATAC RNA, U4atac small nuclear (U12-dependent splicing) snRNA 165-19 chr11 96919267 96919363 + 2 NA Intergenic Intergenic 410890 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 235-89 chr12 99135638 99135811 + 2 NA intron (NM_152788, intron 15 of 25) HAL1ME|LINE|L1 19042 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 459-70 chr13 66589111 66589426 + 2 NA intron (NM_001318373, intron 3 of 3) intron (NM_001318373, intron 3 of 3) -235901 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 494-31 chr10 118656039 118656427 + 2 NA Intergenic L1PB1|LINE|L1 -60585 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 247-172 chr19 6865665 6865872 + 2 NA Intergenic MER41B|LTR|ERV1 -21811 NM_001256253 2015 Hs.2375 NM_001974 ENSG00000174837 ADGRE1 EMR1|TM7LN3 adhesion G protein-coupled receptor E1 protein-coding 281-255 chr20 21843256 21843461 + 2 NA Intergenic L1MB3|LINE|L1 137694 NM_006192 5075 Hs.122310 NM_006192 ENSG00000125813 PAX1 HUP48|OFC2 paired box 1 protein-coding 551-100 chr2 178757688 178758184 + 2 NA intron (NM_001267550, intron 44 of 362) intron (NM_001267550, intron 44 of 362) -18990 NR_120594 101927055 Hs.570275 NR_120594 ENSG00000237298 LOC101927055 - uncharacterized LOC101927055 ncRNA 339-457 chr5 106595521 106595729 + 2 NA Intergenic Intergenic 415389 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 383-2 chr1 10245624 10245937 + 2 NA intron (NM_001365953, intron 2 of 20) intron (NM_001365953, intron 2 of 20) 15016 NM_001365953 23095 Hs.97858 NM_015074 ENSG00000054523 KIF1B CMT2|CMT2A|CMT2A1|HMSNII|KLP|NBLST1 kinesin family member 1B protein-coding 226-327 chr7 87742043 87742188 + 2 NA intron (NM_138290, intron 7 of 11) L1ME4c|LINE|L1 -28792 NM_001348945 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 289-410 chr6 51762500 51762735 + 2 NA intron (NM_138694, intron 55 of 66) intron (NM_138694, intron 55 of 66) 140747 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 398-360 chr8 112264791 112265044 + 2 NA intron (NM_001363185, intron 56 of 66) intron (NM_001363185, intron 56 of 66) -378576 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 562-166 chr5 13514155 13514646 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 430080 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 270-146 chr16 73206375 73206556 + 2 NA Intergenic Intergenic -62018 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 324-529 chr8 85186450 85186767 + 2 NA intron (NM_001083588, intron 1 of 7) (TA)n|Simple_repeat|Simple_repeat -1057 NM_001083589 1875 Hs.445758 NM_001951 ENSG00000133740 E2F5 E2F-5 E2F transcription factor 5 protein-coding 528-260 chr9 28224581 28225062 + 2 NA intron (NM_152570, intron 5 of 6) L1M2|LINE|L1 494484 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 543-15 chr1 181820644 181820996 + 2 NA Intergenic Intergenic 240892 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 630-46 chr2 15900386 15900762 + 2 NA Intergenic L1MEc|LINE|L1 -19825 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 398-87 chr13 62836917 62837157 + 2 NA Intergenic Intergenic -29678 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 763-66 chr8 119395800 119396307 + 2 NA Intergenic MIR|SINE|MIR -20393 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 130-39 chr2 67817066 67817187 + 2 NA intron (NR_110271, intron 2 of 2) L1ME1|LINE|L1 8436 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 210-34 chr10 65170247 65170399 + 2 NA Intergenic L1PREC2|LINE|L1 -245805 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 240-180 chr17 70715833 70716016 + 2 NA Intergenic Intergenic 486255 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 378-451 chr9 74956579 74956869 + 2 NA intron (NR_121183, intron 1 of 4) L1MEc|LINE|L1 3759 NR_121183 101927380 Hs.257556 NR_121183 CARNMT1-AS1 C9orf41-AS1 CARNMT1 antisense RNA 1 ncRNA 370-209 chr2 3273284 3273479 + 2 NA intron (NM_003310, intron 3 of 8) L1MEd|LINE|L1 104437 NM_001330530 7260 Hs.502770 NM_003310 ENSG00000032389 EIPR1 EIPR-1|TSSC1 EARP complex and GARP complex interacting protein 1 protein-coding 412-104 chr15 83045961 83046322 + 2 NA intron (NM_001011885, intron 3 of 6) AluJo|SINE|Alu 21111 NM_025238 53339 Hs.459149 NM_025238 ENSG00000064726 BTBD1 C15orf1|NS5ATP8 BTB domain containing 1 protein-coding 330-193 chr16 74014780 74014972 + 2 NA Intergenic Intergenic 200645 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 446-98 chr14 40232019 40232437 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -722483 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 349-420 chr5 103954567 103954745 + 2 NA Intergenic Intergenic -391867 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 418-63 chr13 92758488 92758796 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -37028 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 284-332 chr5 133710831 133710991 + 2 NA Intergenic Intergenic -98370 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 252-42 chr10 55895817 55895999 + 2 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -267966 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 328-209 chr17 54014653 54014949 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 191874 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 353-223 chr19 36409761 36409956 + 2 NA 5' UTR (NM_001321919, exon 2 of 5) 5' UTR (NM_001321919, exon 2 of 5) 8786 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 113-39 chr4 84740001 84740057 + 2 NA intron (NM_014991, intron 39 of 67) intron (NM_014991, intron 39 of 67) 156902 NM_001263 1040 Hs.654899 NM_001263 ENSG00000163624 CDS1 CDS 1 CDP-diacylglycerol synthase 1 protein-coding 564-74 chr17 50009301 50009809 + 2 NA Intergenic L1M4|LINE|L1 -14331 NM_005220 1747 Hs.134194 NM_005220 ENSG00000064195 DLX3 AI4|TDO distal-less homeobox 3 protein-coding 377-190 chr2 24541836 24542194 + 2 NA intron (NM_001362952, intron 1 of 23) L1M6|LINE|L1 -42462 NM_147233 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 331-570 chrX 76414292 76414601 + 2 NA Intergenic L1PB1|LINE|L1 -13264 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 240-297 chr3 146909885 146910089 + 2 NA Intergenic Intergenic -11936 NR_135560 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 455-229 chr5 99022833 99023163 + 2 NA Intergenic Intergenic -93284 NM_001364113 1105 Hs.643465 NM_001270 ENSG00000153922 CHD1 CHD-1|PILBOS chromodomain helicase DNA binding protein 1 protein-coding 473-249 chr6 154580531 154580985 + 2 NA Intergenic L1MEc|LINE|L1 -70073 NM_173515 154043 Hs.16064 NM_173515 ENSG00000153721 CNKSR3 CNK3|CNK3/IPCEF1|MAGI1 CNKSR family member 3 protein-coding 414-71 chr12 70217146 70217452 + 2 NA Intergenic MIRc|SINE|MIR -25731 NM_001199302 4848 Hs.133350 NM_014515 ENSG00000111596 CNOT2 CDC36|HSPC131|NOT2|NOT2H CCR4-NOT transcription complex subunit 2 protein-coding 318-153 chr12 127090527 127090787 + 2 NA Intergenic L1ME4a|LINE|L1 -30260 NR_104646 101927592 Hs.385663 NR_104646 ENSG00000249345 LINC02405 - long intergenic non-protein coding RNA 2405 ncRNA 265-413 chr9 70818169 70818326 + 2 NA intron (NM_001366152, intron 6 of 27) intron (NM_001366152, intron 6 of 27) -8163 NR_029621 406987 NR_029621 ENSG00000207935 MIR204 MIRN204|RDICC|miRNA204|mir-204 microRNA 204 ncRNA 454-108 chr15 80329770 80330121 + 2 NA intron (NR_033833, intron 1 of 2) L1M2|LINE|L1 11860 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 268-361 chr7 11600556 11600820 + 2 NA intron (NM_015204, intron 2 of 26) MamSINE1|SINE|tRNA-RTE 231510 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 233-117 chr16 25312588 25312732 + 2 NA Intergenic L1M2|LINE|L1 -54815 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 444-212 chr5 169913213 169913529 + 2 NA intron (NM_001346304, intron 1 of 3) intron (NM_001346304, intron 1 of 3) 67124 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 204-5 chr1 71945037 71945165 + 2 NA intron (NM_173808, intron 1 of 6) intron (NM_173808, intron 1 of 6) -108089 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 383-417 chr9 116132716 116132995 + 2 NA Intergenic L1MA8|LINE|L1 -20936 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 715-29 chr19 44429270 44429814 + 2 NA exon (NM_014518, exon 6 of 6) exon (NM_014518, exon 6 of 6) 18930 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 183-14 chr10 57277333 57277493 + 2 NA Intergenic L1M4|LINE|L1 27146 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 469-235 chr5 165731653 165732074 + 2 NA Intergenic L1MEb|LINE|L1 1194507 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 191-103 chr2 118586122 118586271 + 2 NA Intergenic Intergenic 16770 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 552-172 chr5 66421714 66422164 + 2 NA Intergenic ORSL-2a|DNA|hAT-Tip100 89665 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 824-21 chr2 114274604 114275309 + 2 NA Intergenic HAL1|LINE|L1 -167685 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 738-15 chr12 47087355 47087933 + 2 NA intron (NM_138371, intron 1 of 3) intron (NM_138371, intron 1 of 3) -7685 NM_001370299 347902 Hs.121520 NM_181847 ENSG00000139211 AMIGO2 ALI1|AMIGO-2|DEGA adhesion molecule with Ig like domain 2 protein-coding 297-357 chr5 16408071 16408274 + 2 NA intron (NR_104625, intron 7 of 8) intron (NR_104625, intron 7 of 8) 32930 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 514-138 chr2 22362501 22362885 + 2 NA Intergenic L1PA16|LINE|L1 -173786 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 220-31 chr1 219144252 219144441 + 2 NA intron (NR_038845, intron 3 of 4) intron (NR_038845, intron 3 of 4) 29442 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 314-590 chr8 133134685 133134968 + 2 NA TTS (NM_003235) TTS (NM_003235) -32224 NM_001282965 6503 Hs.75367 NM_006748 ENSG00000155926 SLA SLA1|SLAP Src like adaptor protein-coding 410-74 chr12 125203571 125203865 + 2 NA intron (NM_001366854, intron 1 of 8) intron (NM_001366854, intron 1 of 8) 17332 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 119-39 chr20 15111052 15111133 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -85748 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 509-232 chr7 45918752 45919225 + 2 NA intron (NM_000598, intron 1 of 4) intron (NM_000598, intron 1 of 4) 2284 NM_000598 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 411-56 chr11 50616719 50616960 + 2 NA Intergenic ALR/Alpha|Satellite|centr 207692 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 350-151 chr14_GL000225v1_random 115884 116083 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 300-104 chr14 23918133 23918312 + 2 NA Intergenic MER21C|LTR|ERVL -35548 NM_001282987 10901 Hs.528385 NM_021004 ENSG00000157326 DHRS4 CR|NRDR|PHCR|PSCD|SCAD-SRL|SDR-SRL|SDR25C1|SDR25C2 dehydrogenase/reductase 4 protein-coding 251-42 chr10 111744342 111744539 + 2 NA Intergenic L1ME3G|LINE|L1 439325 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 249-448 chr9 80258685 80258857 + 2 NA Intergenic L1MA9|LINE|L1 283748 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 237-254 chr3 169229929 169230118 + 2 NA intron (NM_001205194, intron 1 of 15) intron (NM_001205194, intron 1 of 15) -82552 NM_001366474 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 251-247 chr3 122873594 122873823 + 2 NA intron (NM_032839, intron 8 of 8) intron (NM_032839, intron 8 of 8) -12805 NR_024618 100129550 Hs.61558 NR_024618 ENSG00000273033 LINC02035 - long intergenic non-protein coding RNA 2035 ncRNA 158-62 chr2 167104743 167104856 + 2 NA intron (NM_152381, intron 2 of 10) intron (NM_152381, intron 2 of 10) 36156 NR_046665 100874011 NR_046665 XIRP2-AS1 - XIRP2 antisense RNA 1 ncRNA 433-116 chr18 34500937 34501339 + 2 NA intron (NM_001198945, intron 1 of 10) L1MDa|LINE|L1 7826 NM_001392 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 215-118 chr18 643258 643432 + 2 NA intron (NM_199167, intron 7 of 8) intron (NM_199167, intron 7 of 8) -14308 NM_001354867 7298 Hs.369762 NM_001071 ENSG00000176890 TYMS HST422|TMS|TS thymidylate synthetase protein-coding 217-192 chr2 181148732 181148914 + 2 NA intron (NR_130784, intron 1 of 4) intron (NR_130784, intron 1 of 4) 24986 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 468-319 chr8 113617146 113617542 + 2 NA Intergenic AluSc|SINE|Alu -180405 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 245-62 chr10 133365805 133365981 + 2 NA intron (NM_004092, intron 6 of 7) intron (NM_004092, intron 6 of 7) 5770 NR_037509 100500911 NR_037509 ENSG00000265395 MIR3944 - microRNA 3944 ncRNA 326-471 chr6 143161138 143161455 + 2 NA intron (NM_001366353, intron 2 of 4) L1M5|LINE|L1 -3486 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 133-22 chr14 52317053 52317137 + 2 NA intron (NM_000956, intron 1 of 1) intron (NM_000956, intron 1 of 1) 2783 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 196-165 chr3 7425996 7426133 + 2 NA intron (NM_000844, intron 5 of 9) intron (NM_000844, intron 5 of 9) 109220 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 276-279 chr3 6061749 6062018 + 2 NA Intergenic HAL1|LINE|L1 743566 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 348-4 chr1 40503735 40503934 + 2 NA Intergenic Intergenic -4885 NM_001346949 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 263-41 chr10 30045439 30045601 + 2 NA intron (NM_001350021, intron 2 of 4) intron (NM_001350021, intron 2 of 4) 14066 NM_020848 57608 Hs.533953 NM_020848 ENSG00000165757 JCAD KIAA1462 junctional cadherin 5 associated protein-coding 341-554 chr8 141891323 141891624 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -105160 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 124-63 chr5 123905966 123906065 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 360598 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 297-193 chr19 51821499 51821714 + 2 NA intron (NR_163433, intron 9 of 11) intron (NR_163433, intron 9 of 11) 26449 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 329-59 chr10 62791770 62792029 + 2 NA Intergenic Intergenic -12821 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 239-193 chr2 153769457 153769658 + 2 NA Intergenic L1PB4|LINE|L1 -102365 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 551-89 chr2 82964298 82964775 + 2 NA Intergenic L1P4|LINE|L1 107733 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 285-258 chr3 5491777 5491999 + 2 NA Intergenic Intergenic -241633 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 253-429 chr9 72986336 72986553 + 2 NA Intergenic Intergenic -33391 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 420-209 chr4 116814065 116814460 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 271314 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 239-120 chr15 87497975 87498148 + 2 NA Intergenic Intergenic -78868 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 635-33 chr15 37344999 37345485 + 2 NA Intergenic Intergenic -243931 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 500-45 chr11 15404307 15404652 + 2 NA Intergenic L1MEg2|LINE|L1 -239406 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 629-16 chr10 24752398 24752962 + 2 NA Intergenic Intergenic -28793 NM_020824 57584 Hs.524195 NM_020824 ENSG00000107863 ARHGAP21 ARHGAP10 Rho GTPase activating protein 21 protein-coding 201-168 chr3 187674764 187674884 + 2 NA Intergenic Intergenic -4430 NM_001048 6750 Hs.12409 NM_001048 ENSG00000157005 SST SMST somatostatin protein-coding 253-49 chr10 44812403 44812590 + 2 NA intron (NR_033842, intron 7 of 7) L2a|LINE|L2 -98820 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 460-4 chr1 95546533 95546903 + 2 NA Intergenic Intergenic 36602 NR_110621 100996635 Hs.639548 NR_110621 ENSG00000228971 LINC02607 - long intergenic non-protein coding RNA 2607 ncRNA 755-39 chr2 187005272 187005819 + 2 NA Intergenic L1ME3Cz|LINE|L1 -156375 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 498-150 chr20 36351094 36351570 + 2 NA intron (NM_001365621, intron 1 of 12) MER1A|DNA|hAT-Charlie 44993 NM_001365621 22839 Hs.249600 NM_014902 ENSG00000080845 DLGAP4 DAP-4|DAP4|DLP4|SAPAP-4|SAPAP4 DLG associated protein 4 protein-coding 390-24 chr1 202272801 202273147 + 2 NA intron (NM_001017404, intron 4 of 15) intron (NM_001017404, intron 4 of 15) 58819 NM_001017404 59352 Hs.497402 NM_021636 ENSG00000133067 LGR6 GPCR|VTS20631 leucine rich repeat containing G protein-coupled receptor 6 protein-coding 403-35 chr10 107564102 107564365 + 2 NA Intergenic L1MB8|LINE|L1 -399527 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 199-223 chr7 25355913 25356096 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -127518 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 376-395 chr8 43741055 43741285 + 2 NA Intergenic ALR/Alpha|Satellite|centr 448728 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 558-201 chr7 52298688 52299162 + 2 NA Intergenic Intergenic -736708 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 424-149 chr2 199170536 199170886 + 2 NA Intergenic L1MCc|LINE|L1 287228 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 490-198 chr4 55280894 55281263 + 2 NA Intergenic MER11C|LTR|ERVK -65164 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 401-105 chr15 85732284 85732557 + 2 NA intron (NM_007200, intron 30 of 36) HAL1M8|LINE|L1 26305 NR_120366 101929679 Hs.513112 NR_120366 LOC101929679 - uncharacterized LOC101929679 ncRNA 229-101 chr13 55621577 55621791 + 2 NA Intergenic Intergenic 447230 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 338-519 chr7 124160094 124160394 + 2 NA Intergenic Intergenic -127177 NM_001136002 730130 Hs.450249 NM_001136002 ENSG00000234224 TMEM229A - transmembrane protein 229A protein-coding 239-88 chr13 66686185 66686343 + 2 NA intron (NM_020403, intron 2 of 3) THE1C|LTR|ERVL-MaLR -138905 NR_046527 100874064 Hs.569284 NR_046527 ENSG00000228842 PCDH9-AS2 - PCDH9 antisense RNA 2 ncRNA 644-84 chr6 61966697 61967170 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 319292 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 408-53 chr10 133492783 133493123 + 2 NA Intergenic HAL1b|LINE|L1 -34410 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 345-380 chr4 38360280 38360452 + 2 NA Intergenic Intergenic -6548 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 226-103 chr15 69493352 69493525 + 2 NA Intergenic Intergenic 40620 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 248-32 chr10 34195837 34196012 + 2 NA intron (NM_001184789, intron 20 of 22) MIRb|SINE|MIR -423244 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 670-79 chr3 104447128 104447732 + 2 NA Intergenic Intergenic -919283 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 248-53 chr10 104424362 104424569 + 2 NA intron (NM_001008723, intron 15 of 17) intron (NM_001008723, intron 15 of 17) 55810 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 503-64 chr11 117322007 117322461 + 2 NA intron (NM_001271933, intron 1 of 31) AluSc8|SINE|Alu 456 NM_001271933 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 362-135 chr13 78522128 78522482 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -73817 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 366-239 chr2 205055010 205055327 + 2 NA intron (NM_205863, intron 4 of 21) intron (NM_205863, intron 4 of 21) 509693 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 379-367 chr8 136324022 136324349 + 2 NA Intergenic Intergenic -206613 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 452-189 chr4 90515378 90515815 + 2 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 280565 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 220-374 chr8 108024855 108025031 + 2 NA intron (NM_178565, intron 2 of 5) AluJb|SINE|Alu 56996 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 163-86 chr3 113606470 113606579 + 2 NA intron (NR_136285, intron 11 of 20) intron (NR_136285, intron 11 of 20) 11648 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 502-260 chr8 60179532 60179992 + 2 NA Intergenic LTR83|LTR|ERVL 101638 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 119-20 chr16 22615583 22615691 + 2 NA Intergenic LTR53-int|LTR|ERVL 69939 NR_003676 653786 Hs.564945 NR_003676 ENSG00000257838 OTOAP1 - OTOA pseudogene 1 pseudo 366-127 chr14 61649305 61649523 + 2 NA intron (NR_039985, intron 1 of 2) L1MC3|LINE|L1 -46099 NM_181054 3091 Hs.597216 NM_001530 ENSG00000100644 HIF1A HIF-1-alpha|HIF-1A|HIF-1alpha|HIF1|HIF1-ALPHA|MOP1|PASD8|bHLHe78 hypoxia inducible factor 1 subunit alpha protein-coding 285-468 chrX 101834805 101834961 + 2 NA intron (NR_159739, intron 17 of 18) intron (NR_159739, intron 17 of 18) 22694 NR_159737 55998 Hs.307077 NM_032946 ENSG00000126952 NXF5 - nuclear RNA export factor 5 protein-coding 385-181 chr2 119103782 119104000 + 2 NA Intergenic Intergenic 54860 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 301-122 chr14 55294641 55294855 + 2 NA intron (NM_152231, intron 1 of 1) intron (NM_152231, intron 1 of 1) 22594 NM_152231 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 632-120 chr8 100838295 100838763 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 112042 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 161-131 chr8 129532208 129532338 + 2 NA intron (NR_130917, intron 1 of 3) L1MEg|LINE|L1 42745 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 317-399 chr5 149389007 149389267 + 2 NA intron (NM_001317987, intron 1 of 2) intron (NM_001317987, intron 1 of 2) -9845 NM_014443 27190 Hs.156979 NM_014443 ENSG00000127743 IL17B IL-17B|IL-20|NIRF|ZCYTO7 interleukin 17B protein-coding 253-47 chr10 18616176 18616363 + 2 NA exon (NM_001351117, exon 3 of 10) exon (NM_001351117, exon 3 of 10) 35318 NM_001351115 221078 Hs.396175 NM_182543 ENSG00000241058 NSUN6 4933414E04Rik|ARL5B-AS1|NOPD1 NOP2/Sun RNA methyltransferase 6 protein-coding 596-78 chr17 54500085 54500469 + 2 NA Intergenic Intergenic -400414 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 314-66 chr10 52402210 52402474 + 2 NA Intergenic Intergenic 52930 NR_120642 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 576-143 chr5 150308753 150309155 + 2 NA Intergenic Intergenic -6049 NM_001012301 340075 Hs.591252 NM_001012301 ENSG00000183876 ARSI ASI|SPG66 arylsulfatase family member I protein-coding 631-129 chr9 24044657 24045244 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -194349 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 173-49 chr16 64981874 64981999 + 2 NA intron (NM_001330576, intron 7 of 11) intron (NM_001330576, intron 7 of 11) 140127 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 354-58 chr10 105290508 105290732 + 2 NA Intergenic Intergenic 529713 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 224-120 chr18 1630382 1630562 + 2 NA Intergenic L1MA5A|LINE|L1 -270843 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 161-120 chr8 78289454 78289567 + 2 NA Intergenic Intergenic -226830 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 353-238 chr2 25468870 25469109 + 2 NA intron (NM_033147, intron 10 of 19) L2b|LINE|L2 -126399 NM_175630 1788 Hs.515840 NM_022552 ENSG00000119772 DNMT3A DNMT3A2|M.HsaIIIA|TBRS DNA methyltransferase 3 alpha protein-coding 414-263 chr5 30835162 30835535 + 2 NA Intergenic L2b|LINE|L2 -358338 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 359-289 chr20 42135610 42135932 + 2 NA intron (NM_133170, intron 19 of 31) MIRb|SINE|MIR -517394 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 641-19 chr11 67300503 67301010 + 2 NA intron (NM_207354, intron 10 of 14) intron (NM_207354, intron 10 of 14) -2774 NM_017857 54961 Hs.29173 NM_017857 ENSG00000172830 SSH3 SSH3L slingshot protein phosphatase 3 protein-coding 283-346 chr5 14092400 14092621 + 2 NA Intergenic AluSq|SINE|Alu -50832 NM_007118 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 542-183 chr6 4246796 4247215 + 2 NA Intergenic L1MA9|LINE|L1 -56976 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 299-504 chrX 121681898 121682174 + 2 NA Intergenic L2a|LINE|L2 311064 NR_037444 100500869 NR_037444 ENSG00000265456 MIR3672 - microRNA 3672 ncRNA 470-259 chr8 8435425 8435768 + 2 NA Intergenic L1MEd|LINE|L1 -49157 NM_001080826 157285 Hs.583863 NM_001080826 ENSG00000275342 PRAG1 NACK|PEAK2|PRAGMIN|SGK223 PEAK1 related, kinase-activating pseudokinase 1 protein-coding 161-138 chr9 100050391 100050483 + 2 NA intron (NM_015051, intron 4 of 11) intron (NM_015051, intron 4 of 11) 48563 NM_015051 23071 Hs.154023 NM_015051 ENSG00000023318 ERP44 PDIA10|TXNDC4 endoplasmic reticulum protein 44 protein-coding 232-181 chr2 117517220 117517374 + 2 NA Intergenic Intergenic -297394 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 354-275 chr22 29120792 29121083 + 2 NA intron (NM_001039570, intron 3 of 8) intron (NM_001039570, intron 3 of 8) 47902 NM_001039570 83999 Hs.229335 NM_032045 ENSG00000183762 KREMEN1 ECTD13|KREMEN|KRM1 kringle containing transmembrane protein 1 protein-coding 327-79 chr11 29021641 29021927 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -544236 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 569-11 chr1 165432500 165432947 + 2 NA intron (NM_001256570, intron 1 of 10) intron (NM_001256570, intron 1 of 10) -7739 NM_001256571 6258 Hs.26550 NM_006917 ENSG00000143171 RXRG NR2B3|RXRC retinoid X receptor gamma protein-coding 300-448 chr8 20918255 20918500 + 2 NA Intergenic Intergenic -35256 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 350-111 chr12 132918734 132918967 + 2 NA 3' UTR (NM_183238, exon 5 of 5) 3' UTR (NM_183238, exon 5 of 5) 31008 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 208-181 chr4 34908314 34908482 + 2 NA Intergenic Intergenic -638651 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 391-218 chr21 45217123 45217398 + 2 NA intron (NR_027674, intron 9 of 11) L1MEc|LINE|L1 -17080 NR_135279 114042 Hs.375832 NR_135279 ENSG00000182586 LINC00334 C21orf89|NCRNA00334 long intergenic non-protein coding RNA 334 ncRNA 304-523 chr8 103135080 103135295 + 2 NA non-coding (NR_145429, exon 3 of 6) non-coding (NR_145429, exon 3 of 6) -5538 NM_024812 79870 Hs.533446 NM_024812 ENSG00000164929 BAALC - BAALC binder of MAP3K1 and KLF4 protein-coding 307-233 chr2 56232477 56232634 + 2 NA intron (NM_001348516, intron 2 of 2) THE1D|LTR|ERVL-MaLR -46785 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 173-71 chr2 103183722 103183856 + 2 NA Intergenic (AG)n|Simple_repeat|Simple_repeat -199360 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 257-215 chr2 165082026 165082182 + 2 NA Intergenic L1M4b|LINE|L1 121946 NM_001081676 6328 Hs.435274 NM_006922 ENSG00000153253 SCN3A EIEE62|FFEVF4|NAC3|Nav1.3 sodium voltage-gated channel alpha subunit 3 protein-coding 367-467 chr8 132118532 132118715 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -13358 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 847-7 chr11 36519215 36519987 + 2 NA Intergenic L1M5|LINE|L1 -9329 NM_145803 7189 Hs.444172 NM_004620 ENSG00000175104 TRAF6 MGC:3310|RNF85 TNF receptor associated factor 6 protein-coding 252-34 chr10 28919321 28919552 + 2 NA Intergenic L2a|LINE|L2 73028 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 270-6 chr1 39221010 39221196 + 2 NA intron (NM_012090, intron 1 of 92) intron (NM_012090, intron 1 of 92) 136936 NM_012090 23499 Hs.472475 NM_012090 ENSG00000127603 MACF1 ABP620|ACF7|LIS9|MACF|OFC4 microtubule actin crosslinking factor 1 protein-coding 260-32 chr1 239435785 239436005 + 2 NA intron (NM_001347716, intron 1 of 7) intron (NM_001347716, intron 1 of 7) 49327 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 525-87 chr17 32175815 32176321 + 2 NA intron (NM_001033566, intron 5 of 19) intron (NM_001033566, intron 5 of 19) -24497 NR_002222 503640 Hs.631752 NR_002222 ARGFXP2 - arginine-fifty homeobox pseudogene 2 pseudo 378-420 chr7 134472231 134472546 + 2 NA Intergenic L2|LINE|L2 -13149 NM_001346142 231 Hs.521212 NM_001628 ENSG00000085662 AKR1B1 ADR|ALDR1|ALR2|AR aldo-keto reductase family 1 member B protein-coding 266-151 chr18 339693 339952 + 2 NA intron (NM_130386, intron 5 of 9) intron (NM_130386, intron 5 of 9) -71775 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 197-9 chr1 78462877 78463059 + 2 NA Intergenic L1PA15|LINE|L1 -28006 NM_000959 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 269-437 chrX 58443354 58443538 + 2 NA Intergenic ALR/Alpha|Satellite|centr -532813 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 198-39 chr11 54807696 54807853 + 2 NA Intergenic ALR/Alpha|Satellite|centr 100942 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 205-190 chr3 135403068 135403212 + 2 NA Intergenic Intergenic -562588 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 539-23 chr10 50961187 50961536 + 2 NA Intergenic Intergenic -29527 NM_001098512 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 362-55 chr10 41890032 41890288 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 477885 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 287-224 chr20 24202336 24202547 + 2 NA intron (NR_040102, intron 1 of 3) intron (NR_040102, intron 1 of 3) 2674 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 256-187 chr2 30181065 30181296 + 2 NA Intergenic MIR|SINE|MIR -6254 NR_145719 109616960 NR_145719 ENSG00000207187 SNORA10B - small nucleolar RNA, H/ACA box 10B snoRNA 316-525 chr7 106315985 106316173 + 2 NA Intergenic L1MB8|LINE|L1 -31096 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 337-472 chr5 170087002 170087207 + 2 NA Intergenic Intergenic -18793 NM_144769 2299 Hs.87236 NM_012188 ENSG00000168269 FOXI1 FKH10|FKHL10|FREAC-6|FREAC6|HFH-3|HFH3 forkhead box I1 protein-coding 660-80 chr5 46184770 46185266 + 2 NA Intergenic ALR/Alpha|Satellite|centr -488638 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 577-48 chr12 34490419 34490824 + 2 NA Intergenic ALR/Alpha|Satellite|centr 468125 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 229-160 chr18 55694650 55694838 + 2 NA Intergenic (TTC)n|Simple_repeat|Simple_repeat -58787 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 384-169 chr2 79328999 79329241 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -169367 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 279-301 chr4 117877172 117877428 + 2 NA Intergenic L2a|LINE|L2 42899 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 408-281 chr5 143989267 143989501 + 2 NA Intergenic Intergenic 177223 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 503-138 chr19 57611512 57611891 + 2 NA intron (NR_135923, intron 3 of 3) MER50C|LTR|ERV1 -2541 NM_003435 7693 Hs.469694 NM_003435 ENSG00000213762 ZNF134 pHZ-15 zinc finger protein 134 protein-coding 272-424 chr7 68373916 68374065 + 2 NA Intergenic Intergenic 353737 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 316-611 chrX 95264569 95264790 + 2 NA Intergenic L3|LINE|CR1 -201453 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 300-381 chr5 179038453 179038681 + 2 NA Intergenic Intergenic 14763 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 224-353 chr9 100383835 100384003 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR -30977 NM_017746 54881 Hs.494648 NM_017746 ENSG00000136891 TEX10 Ipi1|bA208F1.2 testis expressed 10 protein-coding 240-64 chr10 112845285 112845481 + 2 NA intron (NM_001365713, intron 8 of 8) intron (NM_001365713, intron 8 of 8) 21887 NR_120684 103344931 Hs.458447 NR_120684 ENSG00000260917 LOC103344931 - uncharacterized LOC103344931 ncRNA 397-178 chr2 202151793 202152021 + 2 NA intron (NM_001277372, intron 13 of 23) AluJr|SINE|Alu -34849 NR_135243 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 280-295 chr4 92179822 92180047 + 2 NA Intergenic L1MA2|LINE|L1 97368 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 373-219 chr2 167931258 167931619 + 2 NA intron (NR_131227, intron 1 of 4) intron (NR_131227, intron 1 of 4) 9706 NR_131227 105616981 Hs.512811 NR_131227 LOC105616981 - uncharacterized LOC105616981 ncRNA 258-379 chr7 145888759 145888942 + 2 NA Intergenic Intergenic -885421 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 406-146 chr2 79184200 79184437 + 2 NA Intergenic Intergenic -24565 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 381-164 chr19 34844824 34845026 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -12056 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 342-128 chr13 59439576 59439887 + 2 NA Intergenic LTR12C|LTR|ERV1 -572987 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 387-69 chr11 109694482 109694728 + 2 NA Intergenic L1M2|LINE|L1 272415 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 400-95 chr14 63168357 63168730 + 2 NA Intergenic L1MA7|LINE|L1 -35900 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 589-75 chr2 128918747 128919232 + 2 NA Intergenic L1M4|LINE|L1 54389 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 325-246 chr19 11746192 11746392 + 2 NA Intergenic AluSg7|SINE|Alu -7346 NM_017507 55552 Hs.142167 NM_017507 ENSG00000197933 ZNF823 HSZFP36 zinc finger protein 823 protein-coding 175-74 chr2 28041290 28041395 + 2 NA intron (NM_199193, intron 6 of 13) intron (NM_199193, intron 6 of 13) 44975 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 205-228 chr5 126959126 126959276 + 2 NA intron (NM_178450, intron 1 of 4) L1MC3|LINE|L1 71357 NM_178450 115123 Hs.132441 NM_178450 ENSG00000173926 MARCH3 MARCH-III|RNF173 membrane associated ring-CH-type finger 3 protein-coding 297-89 chr11 113982271 113982543 + 2 NA intron (NM_213621, intron 4 of 7) intron (NM_213621, intron 4 of 7) 4907 NM_001161772 3359 Hs.413899 NM_000869 ENSG00000166736 HTR3A 5-HT-3|5-HT3A|5-HT3R|5HT3R|HTR3 5-hydroxytryptamine receptor 3A protein-coding 493-56 chr12 30478070 30478480 + 2 NA Intergenic Intergenic 198969 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 193-58 chr14 48763866 48764037 + 2 NA Intergenic L1MA4|LINE|L1 822429 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 218-115 chr16 23746888 23747059 + 2 NA Intergenic L2|LINE|L2 -8053 NM_022097 63928 Hs.178589 NM_022097 ENSG00000166869 CHP2 - calcineurin like EF-hand protein 2 protein-coding 478-287 chr8 70559033 70559500 + 2 NA Intergenic Intergenic 48403 NM_001317805 23471 Hs.491988 NM_014294 ENSG00000067167 TRAM1 PNAS8|TRAM|TRAMP translocation associated membrane protein 1 protein-coding 223-161 chr2 121804455 121804645 + 2 NA Intergenic Intergenic 48899 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 196-230 chr6 144540788 144540941 + 2 NA intron (NM_007124, intron 44 of 73) L1MC4|LINE|L1 135209 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 319-537 chr8 98463149 98463405 + 2 NA intron (NM_006281, intron 10 of 10) intron (NM_006281, intron 10 of 10) 36319 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 427-73 chr14 68410714 68410974 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 217943 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 212-25 chr1 242693287 242693441 + 2 NA Intergenic Intergenic -168667 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 318-394 chr4 47255936 47256146 + 2 NA intron (NM_000812, intron 4 of 8) L2|LINE|L2 207661 NM_017845 54951 Hs.23956 NM_017845 ENSG00000169019 COMMD8 - COMM domain containing 8 protein-coding 228-289 chr6 45402323 45402506 + 2 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) -19861 NM_001278478 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 415-90 chr16 79677964 79678370 + 2 NA Intergenic L1ME2z|LINE|L1 -77430 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 281-268 chr21 23612959 23613154 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -228221 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 477-9 chr1 47101766 47102174 + 2 NA intron (NM_178134, intron 8 of 11) L1M2|LINE|L1 34739 NM_178134 199974 Hs.176588 NM_178134 ENSG00000186160 CYP4Z1 CYP4A20 cytochrome P450 family 4 subfamily Z member 1 protein-coding 306-234 chr2 60862880 60863038 + 2 NA intron (NR_033980, intron 1 of 2) L2a|LINE|L2 18355 NR_033980 400957 Hs.170358 NR_033980 ENSG00000228414 LINC01185 - long intergenic non-protein coding RNA 1185 ncRNA 411-228 chr5 52456408 52456755 + 2 NA Intergenic Intergenic -331335 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 160-101 chr6 162359762 162359897 + 2 NA intron (NM_004562, intron 2 of 11) MER103C|DNA|hAT-Charlie -367303 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 277-408 chr8 72911240 72911447 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) -97521 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 129-22 chr14 87151106 87151233 + 2 NA Intergenic Intergenic 245391 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 355-74 chr10 126587831 126588034 + 2 NA intron (NM_001350922, intron 2 of 8) L1PA11|LINE|L1 -66439 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 242-340 chr6 39606742 39606929 + 2 NA intron (NM_001289020, intron 6 of 21) intron (NM_001289020, intron 6 of 21) 118573 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 618-70 chr2 191260281 191260636 + 2 NA intron (NM_012223, intron 1 of 28) intron (NM_012223, intron 1 of 28) 15054 NM_001130158 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 405-352 chr9 124168338 124168589 + 2 NA Intergenic L1PREC2|LINE|L1 -89143 NM_001166167 10783 Hs.197071 NM_014397 ENSG00000119408 NEK6 SID6-1512 NIMA related kinase 6 protein-coding 595-162 chr8 82514744 82515193 + 2 NA Intergenic Intergenic -397136 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 705-95 chr8 15695855 15696399 + 2 NA intron (NM_001356429, intron 6 of 10) THE1B-int|LTR|ERVL-MaLR 155864 NM_006765 7991 Hs.426324 NM_006765 ENSG00000104723 TUSC3 D8S1992|M33|MRT22|MRT7|MagT2|N33|OST3A|SLC58A2 tumor suppressor candidate 3 protein-coding 525-39 chr11 25730178 25730539 + 2 NA Intergenic Intergenic -458765 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 204-313 chrX 55967072 55967241 + 2 NA intron (NM_001324105, intron 1 of 5) L1MA3|LINE|L1 58871 NM_001324104 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 245-16 chr1 167578141 167578318 + 2 NA Intergenic MIR|SINE|MIR -24467 NM_003851 8804 Hs.5710 NM_003851 ENSG00000143162 CREG1 CREG cellular repressor of E1A stimulated genes 1 protein-coding 589-31 chr14 62098465 62098902 + 2 NA intron (NM_001367661, intron 8 of 8) L2b|LINE|L2 -18674 NR_015358 646113 Hs.445241 NM_001039785 LINC00643 - long intergenic non-protein coding RNA 643 ncRNA 173-86 chr22 17162316 17162443 + 2 NA intron (NR_024483, intron 1 of 1) intron (NR_024483, intron 1 of 1) 2908 NM_017829 27440 Hs.26890 NM_017829 ENSG00000069998 HDHD5 CECR5 haloacid dehalogenase like hydrolase domain containing 5 protein-coding 575-98 chr2 234440420 234440814 + 2 NA Intergenic MER94|DNA|hAT-Blackjack 13978 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 375-123 chr14 34006037 34006322 + 2 NA Intergenic L1MC5a|LINE|L1 -55105 NM_022073 112399 Hs.135507 NM_022073 ENSG00000129521 EGLN3 HIFP4H3|HIFPH3|PHD3 egl-9 family hypoxia inducible factor 3 protein-coding 307-219 chr19 51446215 51446476 + 2 NA Intergenic (TATATA)n|Simple_repeat|Simple_repeat 12109 NM_001363548 27181 Hs.447899 NM_014442 ENSG00000105366 SIGLEC8 SAF2|SIGLEC-8|SIGLEC8L sialic acid binding Ig like lectin 8 protein-coding 504-79 chr15 62366277 62366762 + 2 NA Intergenic MIRc|SINE|MIR 23490 NR_106733 102464834 NR_106733 ENSG00000275451 MIR6085 hsa-mir-6085 microRNA 6085 ncRNA 452-226 chr5 179036506 179036843 + 2 NA Intergenic L1ME3A|LINE|L1 12870 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 425-41 chr10 81373607 81373978 + 2 NA Intergenic L1PBa|LINE|L1 -501402 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 245-131 chr14 80231408 80231593 + 2 NA promoter-TSS (NM_000793) promoter-TSS (NM_000793) -443 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 359-111 chr12 21763251 21763498 + 2 NA Intergenic Intergenic 11332 NM_004982 3764 Hs.102308 NM_004982 ENSG00000121361 KCNJ8 KIR6.1|uKATP-1 potassium voltage-gated channel subfamily J member 8 protein-coding 431-251 chr6 99959506 99959836 + 2 NA intron (NM_032503, intron 1 of 5) L1MB1|LINE|L1 -34367 NR_038384 728012 Hs.434366 NR_038384 ENSG00000229315 MCHR2-AS1 - MCHR2 antisense RNA 1 ncRNA 277-470 chrX 147426665 147426836 + 2 NA Intergenic MIR3|SINE|MIR -142022 NR_030240 574518 NR_030240 ENSG00000207867 MIR514A3 MIR514-3|MIRN514-3|hsa-mir-514a-3 microRNA 514a-3 ncRNA 476-274 chr8 121012846 121013237 + 2 NA Intergenic Intergenic -200995 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 509-44 chr11 81111745 81112029 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -349084 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 604-118 chr4 42719884 42720201 + 2 NA Intergenic L1PB4|LINE|L1 -62937 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 285-113 chr14 43137655 43137878 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL 1369517 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 473-40 chr10 116099838 116100264 + 2 NA intron (NM_145793, intron 4 of 8) MIRb|SINE|MIR 94738 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 301-396 chr6 65214402 65214654 + 2 NA intron (NM_001292009, intron 12 of 43) Tigger1|DNA|TcMar-Tigger -86890 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 189-80 chr18 77954744 77954859 + 2 NA Intergenic Intergenic 38926 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 472-220 chr3 194066502 194066859 + 2 NA intron (NR_136181, intron 1 of 3) L1MA2|LINE|L1 2849 NR_136181 285389 Hs.157102 NR_136179 ENSG00000230102 LINC02028 - long intergenic non-protein coding RNA 2028 ncRNA 368-288 chr3 42741188 42741406 + 2 NA intron (NR_046732, intron 2 of 3) intron (NR_046732, intron 2 of 3) 8722 NR_046732 100874114 Hs.669654 NR_046732 ENSG00000173811 CCDC13-AS1 - CCDC13 antisense RNA 1 ncRNA 257-370 chr6 165048038 165048286 + 2 NA Intergenic Intergenic -226099 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 316-388 chr4 37289140 37289442 + 2 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 44548 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 268-421 chr8 132388933 132389151 + 2 NA intron (NM_004519, intron 1 of 14) L1ME3B|LINE|L1 58220 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 560-150 chr6 63287328 63287740 + 2 NA intron (NM_001143940, intron 2 of 4) AluSz6|SINE|Alu 32443 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 264-343 chr5 152317586 152317764 + 2 NA Intergenic Intergenic 87604 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 390-18 chr1 175456299 175456552 + 2 NA intron (NM_003285, intron 2 of 22) L2a|LINE|L2 -263438 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 410-105 chr16 73618493 73618831 + 2 NA Intergenic Intergenic 231857 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 306-196 chr17 55118098 55118309 + 2 NA intron (NM_178509, intron 16 of 17) L2c|LINE|L2 -146757 NM_002126 3131 Hs.196952 NM_002126 ENSG00000108924 HLF - HLF transcription factor, PAR bZIP family member protein-coding 615-152 chrX 55580303 55580729 + 2 NA Intergenic L1PB4|LINE|L1 -42884 NM_198451 139628 Hs.364260 NM_198451 ENSG00000189299 FOXR2 FOXN6 forkhead box R2 protein-coding 317-179 chr16 20239696 20239886 + 2 NA Intergenic Intergenic 87722 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 444-225 chr6 142603821 142604262 + 2 NA intron (NR_027311, intron 1 of 2) intron (NR_027311, intron 1 of 2) 33795 NR_027311 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 341-165 chr15 57871073 57871284 + 2 NA Intergenic L1MDa|LINE|L1 142845 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 502-135 chr2 48213255 48213597 + 2 NA Intergenic Intergenic -101256 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 278-109 chr14 53987528 53987784 + 2 NA Intergenic L1MCa|LINE|L1 -30765 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 364-36 chr1 215981294 215981485 + 2 NA intron (NM_206933, intron 35 of 71) L1ME3B|LINE|L1 -91076 NR_125993 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 332-541 chr8 118159736 118159919 + 2 NA intron (NR_146234, intron 4 of 5) AluSq2|SINE|Alu -48008 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 433-235 chr5 152299609 152299864 + 2 NA Intergenic Intergenic 105543 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 176-48 chr18 3600576 3600695 + 2 NA intron (NM_001242761, intron 7 of 11) intron (NM_001242761, intron 7 of 11) -3102 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 323-121 chr12 115466376 115466588 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 682172 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 238-134 chr17 3909791 3909938 + 2 NA intron (NM_002558, intron 1 of 11) intron (NM_002558, intron 1 of 11) 6601 NM_002558 5023 Hs.41735 NM_002558 ENSG00000108405 P2RX1 P2X1 purinergic receptor P2X 1 protein-coding 317-486 chr8 90346806 90347110 + 2 NA intron (NR_051989, intron 2 of 3) L1MC3|LINE|L1 125470 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 124-23 chr13 62555019 62555103 + 2 NA Intergenic L2|LINE|L2 231404 NR_047038 100874180 Hs.7415 NR_047038 ENSG00000229307 LINC00459 - long intergenic non-protein coding RNA 459 ncRNA 259-57 chr10 86538730 86538945 + 2 NA Intergenic MER50|LTR|ERV1 -17045 NM_015045 23063 Hs.203099 NM_015045 ENSG00000062650 WAPL FOE|KIAA0261|WAPAL WAPL cohesin release factor protein-coding 415-264 chr7 125272369 125272603 + 2 NA intron (NR_110188, intron 3 of 8) L1PB4|LINE|L1 -8195 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 433-2 chr1 41928692 41929020 + 2 NA intron (NR_038261, intron 1 of 3) L1MC4|LINE|L1 -9934 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 557-3 chr1 37267084 37267554 + 2 NA Intergenic Intergenic 105756 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 241-398 chr8 87678617 87678807 + 2 NA Intergenic Intergenic 195303 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 312-152 chr14 67629411 67629672 + 2 NA intron (NM_001172, intron 2 of 7) L1MA7|LINE|L1 9621 NM_001172 384 Hs.226007 NM_001172 ENSG00000081181 ARG2 - arginase 2 protein-coding 352-520 chr8 49251042 49251305 + 2 NA Intergenic L1MA7|LINE|L1 178829 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 432-280 chr8 16879239 16879480 + 2 NA Intergenic L1P2|LINE|L1 122986 NM_019851 26281 Hs.199905 NM_019851 ENSG00000078579 FGF20 FGF-20|RHDA2 fibroblast growth factor 20 protein-coding 506-292 chr8 126216895 126217284 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -108406 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 637-26 chr12 29229190 29229689 + 2 NA intron (NM_001271784, intron 1 of 10) L3|LINE|CR1 5773 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 129-21 chr14 86515934 86516025 + 2 NA Intergenic Intergenic -389799 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 268-293 chr4 132639712 132639853 + 2 NA intron (NR_126401, intron 1 of 3) intron (NR_126401, intron 1 of 3) 48693 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 761-47 chr3 120518870 120519534 + 2 NA Intergenic LTR16B1|LTR|ERVL -68210 NM_007085 11167 Hs.269512 NM_007085 ENSG00000163430 FSTL1 FRP|FSL1|MIR198|OCC-1|OCC1|tsc36 follistatin like 1 protein-coding 351-7 chr1 86203742 86204045 + 2 NA Intergenic L2|LINE|L2 -46909 NR_146340 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 719-72 chr7 8716391 8716839 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 283006 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 455-8 chr1 94545375 94545728 + 2 NA Intergenic Intergenic 1849 NR_162147 113219466 NR_162147 MIR12133 - microRNA 12133 ncRNA 339-121 chr12 15375232 15375426 + 2 NA intron (NM_030667, intron 1 of 26) L1MB7|LINE|L1 52821 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 229-334 chr6 61858434 61858631 + 2 NA intron (NM_001350622, intron 6 of 9) intron (NM_001350622, intron 6 of 9) 284402 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 270-367 chr7 98292025 98292191 + 2 NA TTS (NM_015379) TTS (NM_015379) 10422 NM_015379 25798 Hs.567438 NM_015379 ENSG00000164713 BRI3 I3 brain protein I3 protein-coding 128-38 chr3 1819609 1819684 + 2 NA Intergenic Intergenic -279157 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 321-62 chr10 57912589 57912784 + 2 NA Intergenic Intergenic 355208 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 184-139 chr5 107641945 107642078 + 2 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 28926 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 337-576 chr9 35281490 35281688 + 2 NA intron (NM_006377, intron 7 of 38) L2c|LINE|L2 -60307 NM_001371188 335-72 chr10 105575261 105575524 + 2 NA Intergenic L3|LINE|CR1 244941 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 277-98 chr13 33177059 33177260 + 2 NA intron (NM_001243476, intron 5 of 17) intron (NM_001243476, intron 5 of 17) 8932 NM_178007 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 348-21 chr1 147359276 147359462 + 2 NA Intergenic L1PA10|LINE|L1 116227 NM_001348452 9557 Hs.191164 NM_004284 ENSG00000131778 CHD1L ALC1|CHDL chromodomain helicase DNA binding protein 1 like protein-coding 709-78 chr5 117386377 117387072 + 2 NA Intergenic MER52A|LTR|ERV1 -28788 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 224-336 chr8 125121746 125121963 + 2 NA intron (NM_001349486, intron 3 of 7) intron (NM_001349486, intron 3 of 7) 29994 NM_173685 286053 Hs.388297 NM_173685 ENSG00000156831 NSMCE2 C8orf36|MMS21|NSE2|ZMIZ7 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase protein-coding 219 chr1 1990554 1990765 + 2 NA intron (NM_001304360, intron 2 of 38) HAL1|LINE|L1 13127 NM_001304360 85452 Hs.232092 NM_001003808 ENSG00000142609 CFAP74 C1orf222|KIAA1751 cilia and flagella associated protein 74 protein-coding 225-372 chr8 122734167 122734339 + 2 NA Intergenic Intergenic -40147 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 254-418 chr8 109408145 109408343 + 2 NA intron (NM_177531, intron 18 of 77) intron (NM_177531, intron 18 of 77) 45783 NM_177531 93035 Hs.170128 NM_177531 ENSG00000205038 PKHD1L1 PKHDL1 PKHD1 like 1 protein-coding 216-42 chr10 89831817 89831992 + 2 NA intron (NR_038382, intron 2 of 3) HAL1|LINE|L1 2411 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 342-490 chr7 80358338 80358630 + 2 NA Intergenic L1M5|LINE|L1 15955 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 666-60 chr2 124340370 124340913 + 2 NA intron (NM_130773, intron 3 of 23) LTR48|LTR|ERV1 315354 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 800-56 chr6 70689135 70689769 + 2 NA intron (NM_001281440, intron 1 of 10) L1MD2|LINE|L1 20922 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 491-31 chr11 31179901 31180260 + 2 NA intron (NM_001367979, intron 9 of 38) L1M2|LINE|L1 -187394 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 550 chr1 11182386 11182759 + 2 NA intron (NM_004958, intron 28 of 57) L1ME3A|LINE|L1 -6783 NM_021146 10218 Hs.146559 NM_021146 ENSG00000171819 ANGPTL7 AngX|CDT6|dJ647M16.1 angiopoietin like 7 protein-coding 549-67 chr15 89780220 89780667 + 2 NA Intergenic Intergenic 4111 NM_001039958 145873 Hs.37311 NM_001039958 ENSG00000188095 MESP2 SCDO2|bHLHc6 mesoderm posterior bHLH transcription factor 2 protein-coding 257-219 chr2 181156042 181156269 + 2 NA intron (NR_130784, intron 1 of 4) MER77B|LTR|ERVL 32318 NR_130784 101927156 Hs.580074 NR_130784 LINC01934 - long intergenic non-protein coding RNA 1934 ncRNA 451-225 chr8 16373902 16374252 + 2 NA Intergenic Intergenic -181286 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 115-5 chr10 8785649 8785743 + 2 NA Intergenic L1MEd|LINE|L1 -112293 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 346-357 chr4 79823318 79823653 + 2 NA Intergenic Intergenic -3986 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 248-415 chr8 129525603 129525769 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) -41544 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 267-18 chr1 106808391 106808530 + 2 NA Intergenic Intergenic -9779 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 278-96 chr13 94936411 94936663 + 2 NA Intergenic Intergenic -23504 NR_047487 100861544 Hs.48706 NR_047487 ENSG00000260962 LINC00557 - long intergenic non-protein coding RNA 557 ncRNA 455-208 chr5 12808185 12808617 + 2 NA Intergenic Intergenic 140542 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 212-231 chr4 57708451 57708618 + 2 NA Intergenic L2a|LINE|L2 282662 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 185-132 chr3 32234091 32234218 + 2 NA Intergenic L1MC4a|LINE|L1 -4525 NM_001320308 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 339-261 chr2 69559625 69559922 + 2 NA intron (NM_014911, intron 2 of 21) intron (NM_014911, intron 2 of 21) -39602 NR_003705 100124535 Hs.693447 NR_003705 ENSG00000207016 SNORA36C - small nucleolar RNA, H/ACA box 36C snoRNA 469-56 chr11 99977674 99977988 + 2 NA intron (NM_001243270, intron 7 of 23) intron (NM_001243270, intron 7 of 23) 421686 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 268-27 chr10 8548539 8548713 + 2 NA Intergenic L1MEc|LINE|L1 45765 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 358-159 chr17 63301939 63302162 + 2 NA intron (NM_025185, intron 8 of 25) L1PA8|LINE|L1 138217 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 238-163 chr2 35119679 35119875 + 2 NA Intergenic L1M1|LINE|L1 -351628 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 123-62 chr8 134672295 134672366 + 2 NA intron (NM_020863, intron 1 of 15) L1PA5|LINE|L1 24225 NM_001174158 57623 Hs.446172 NM_020863 ENSG00000066827 ZFAT AITD3|ZFAT1|ZNF406 zinc finger and AT-hook domain containing protein-coding 324-254 chr2 48048756 48049005 + 2 NA Intergenic MIRb|SINE|MIR -143087 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 355-354 chr4 29159828 29160098 + 2 NA Intergenic Intergenic -54329 NR_146996 105374561 Hs.582013 NR_146996 ENSG00000248338 LINC02472 - long intergenic non-protein coding RNA 2472 ncRNA 255-9 chr1 104503394 104503570 + 2 NA Intergenic L1MB2|LINE|L1 430459 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 510-105 chr17 57802642 57803137 + 2 NA Intergenic Intergenic 47155 NM_016070 51649 Hs.5836 NM_016070 ENSG00000181610 MRPS23 CGI-138|HSPC329|MRP-S23 mitochondrial ribosomal protein S23 protein-coding 310-191 chr17 77206708 77207005 + 2 NA exon (NM_001143998, exon 13 of 17) exon (NM_001143998, exon 13 of 17) 21643 NM_001144001 6397 Hs.464184 NM_003003 ENSG00000129657 SEC14L1 PRELID4A|SEC14L SEC14 like lipid binding 1 protein-coding 429-237 chr5 65135545 65135809 + 2 NA Intergenic L1MB3|LINE|L1 346243 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 242-398 chr8 100796153 100796274 + 2 NA Intergenic Intergenic -74125 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 338-510 chr7 83826361 83826641 + 2 NA Intergenic Intergenic -177362 NM_012431 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 853-30 chr5 51502517 51503241 + 2 NA Intergenic L1MEf|LINE|L1 119431 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 319-462 chr6 81935996 81936197 + 2 NA intron (NR_149134, intron 1 of 2) AluJb|SINE|Alu 2325 NR_149134 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 557-217 chr9 74060541 74060937 + 2 NA Intergenic Intergenic -310792 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 305-293 chr2 223358900 223359107 + 2 NA Intergenic MER3|DNA|hAT-Charlie 243358 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 400-293 chr5 119029714 119030070 + 2 NA intron (NR_134250, intron 1 of 2) MSTD|LTR|ERVL-MaLR 7769 NR_134249 105379143 Hs.636285 NR_134249 ENSG00000249494 LOC105379143 - uncharacterized LOC105379143 ncRNA 325-463 chr5 141219199 141219431 + 2 NA TTS (NM_018933) TTS (NM_018933) -3011 NM_018934 56122 Hs.658497 NM_018934 ENSG00000120327 PCDHB14 PCDH-BETA14 protocadherin beta 14 protein-coding 264-334 chr5 112312934 112313175 + 2 NA intron (NM_001347887, intron 1 of 23) intron (NM_001347887, intron 1 of 23) 84771 NR_110559 101927023 Hs.571002 NR_110559 ENSG00000251076 LOC101927023 - uncharacterized LOC101927023 ncRNA 322-295 chr20 45667392 45667553 + 2 NA intron (NM_147197, intron 1 of 4) intron (NM_147197, intron 1 of 4) 2767 NM_147197 259239 Hs.374924 NM_147197 ENSG00000180083 WFDC11 WAP11 WAP four-disulfide core domain 11 protein-coding 242-284 chr4 182885388 182885598 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 31760 NM_001351745 1635 Hs.183850 NM_001921 ENSG00000129187 DCTD - dCMP deaminase protein-coding 133-58 chr4 147519449 147519534 + 2 NA intron (NM_001166055, intron 2 of 5) intron (NM_001166055, intron 2 of 5) 38394 NM_001354797 1909 Hs.183713 NM_001957 ENSG00000151617 EDNRA ET-A|ETA|ETA-R|ETAR|ETRA|MFDA|hET-AR endothelin receptor type A protein-coding 256-72 chr11 98606682 98606855 + 2 NA Intergenic Intergenic -414181 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 222-213 chr20 60165022 60165163 + 2 NA intron (NR_046099, intron 2 of 4) (TA)n|Simple_repeat|Simple_repeat 26600 NR_046099 284757 Hs.542528 NM_001004305 ENSG00000228340 MIR646HG - MIR646 host gene ncRNA 346-427 chr6 74210410 74210690 + 2 NA intron (NR_110856, intron 1 of 3) intron (NR_110856, intron 1 of 3) 141099 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 755-42 chr3 60446006 60446567 + 2 NA intron (NM_001320900, intron 6 of 9) L1MEg|LINE|L1 171584 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 429-243 chr5 121693873 121694167 + 2 NA Intergenic MER61A|LTR|ERV1 -157862 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 220-315 chr6 48695708 48695852 + 2 NA Intergenic L1P4a|LINE|L1 -627091 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 250-279 chr3 81282483 81282690 + 2 NA Intergenic AluSc|SINE|Alu 288718 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 387-336 chr7 24505490 24505706 + 2 NA Intergenic Intergenic -67854 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 349-333 chr3 95091745 95092023 + 2 NA Intergenic Intergenic 153621 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 161-89 chr5 112352532 112352652 + 2 NA intron (NM_001347887, intron 1 of 23) L1MA4A|LINE|L1 66685 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 353-443 chr6 48555223 48555521 + 2 NA Intergenic L1M3|LINE|L1 -486683 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 256-445 chr9 13475015 13475226 + 2 NA Intergenic L1PA15|LINE|L1 -43791 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 314-145 chr13 59287188 59287466 + 2 NA Intergenic MIRb|SINE|MIR -725391 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 252-126 chr15 26526218 26526433 + 2 NA Intergenic L1MB7|LINE|L1 102765 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 311-44 chr10 20358738 20359002 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -193100 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 240-322 chr4 81588897 81589069 + 2 NA Intergenic Intergenic -117076 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 543-189 chr4 130581070 130581484 + 2 NA Intergenic MER39B|LTR|ERV1 204916 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 238-73 chr11 96498622 96498755 + 2 NA intron (NR_047481, intron 1 of 4) L2a|LINE|L2 8189 NR_047481 100874053 Hs.742044 NR_047481 JRKL-AS1 - JRKL antisense RNA 1 ncRNA 338-250 chr2 34388269 34388549 + 2 NA Intergenic MIRc|SINE|MIR -289148 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 251-220 chr22 24470539 24470757 + 2 NA intron (NR_028483, intron 3 of 7) AluY|SINE|Alu 24426 NR_028484 646023 Hs.632761 NM_001039784 ENSG00000178803 ADORA2A-AS1 C22orf45 ADORA2A antisense RNA 1 ncRNA 419-18 chr1 152194949 152195241 + 2 NA Intergenic L1M5|LINE|L1 29101 NM_001009931 388697 Hs.490162 NM_001009931 ENSG00000197915 HRNR FLG3|S100A16|S100a18 hornerin protein-coding 268-256 chr3 161821488 161821719 + 2 NA Intergenic Intergenic 324795 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 454-144 chr2 38413488 38413821 + 2 NA Intergenic AluSx3|SINE|Alu -17640 NR_146454 100996902 Hs.128280 NR_146454 ENSG00000235009 LINC01883 - long intergenic non-protein coding RNA 1883 ncRNA 570-191 chr8 34158740 34159124 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -558826 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 251-392 chr8 86640823 86641061 + 2 NA intron (NM_019098, intron 10 of 17) MER41B|LTR|ERV1 102733 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 305-42 chr1 215686558 215686810 + 2 NA intron (NM_206933, intron 61 of 71) intron (NM_206933, intron 61 of 71) 119380 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 285-36 chr10 44848429 44848628 + 2 NA intron (NR_033842, intron 2 of 7) MLT1G1|LTR|ERVL-MaLR -62788 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 528-144 chr20 11653559 11654020 + 2 NA Intergenic Intergenic 216926 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 328-246 chr2 14840105 14840390 + 2 NA Intergenic L1M3f|LINE|L1 207530 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 240-197 chr18 75484119 75484314 + 2 NA Intergenic L1MCa|LINE|L1 -56513 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 312-200 chr18 37929811 37930064 + 2 NA Intergenic Intergenic 272802 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 365-95 chr12 37882402 37882712 + 2 NA Intergenic ALR/Alpha|Satellite|centr -434217 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 270-277 chr4 117915277 117915480 + 2 NA Intergenic L1PB2|LINE|L1 80977 NR_147154 105377391 Hs.148448 NR_147154 ENSG00000229565 LINC02264 - long intergenic non-protein coding RNA 2264 ncRNA 337-319 chr20 61197306 61197559 + 2 NA Intergenic L1ME1|LINE|L1 -54829 NM_001794 1002 Hs.473231 NM_001794 ENSG00000179242 CDH4 CAD4|R-CAD|RCAD cadherin 4 protein-coding 292-95 chr12 23167950 23168199 + 2 NA Intergenic LTR67B|LTR|ERVL -7562 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 509-15 chr1 194676215 194676515 + 2 NA Intergenic Intergenic 1371620 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 350-377 chr4 184040827 184041034 + 2 NA Intergenic Intergenic 135623 NM_020225 56977 Hs.21958 NM_020225 ENSG00000173320 STOX2 - storkhead box 2 protein-coding 254-128 chr15 55129105 55129345 + 2 NA Intergenic Intergenic 67716 NM_016304 51187 Hs.274772 NM_016304 ENSG00000137876 RSL24D1 C15orf15|HRP-L30-iso|L30|RLP24|RPL24|RPL24L|TVAS3 ribosomal L24 domain containing 1 protein-coding 329-216 chr17 61630775 61630978 + 2 NA Intergenic L1MA4|LINE|L1 -39657 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 207-279 chr7 133712913 133713083 + 2 NA intron (NM_021807, intron 10 of 17) L1MB5|LINE|L1 111890 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 335-441 chr5 148498043 148498282 + 2 NA intron (NR_104445, intron 6 of 7) intron (NR_104445, intron 6 of 7) 114204 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 523-71 chr13 69284002 69284407 + 2 NA intron (NR_125752, intron 2 of 3) intron (NR_125752, intron 2 of 3) 61858 NR_125752 103689913 Hs.585628 NR_125752 ENSG00000235221 LINC00383 LINC00401 long intergenic non-protein coding RNA 383 ncRNA 341-53 chr10 16700403 16700668 + 2 NA intron (NM_152724, intron 6 of 7) intron (NM_152724, intron 6 of 7) 116889 NM_012425 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 368-337 chr4 93946320 93946600 + 2 NA Intergenic Intergenic 117707 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 152 chr1 11354622 11354725 + 2 NA Intergenic Intergenic 81475 NM_001330350 29914 Hs.522933 NM_013319 ENSG00000120942 UBIAD1 SCCD|TERE1 UbiA prenyltransferase domain containing 1 protein-coding 497-244 chr6 36753665 36754135 + 2 NA intron (NM_020939, intron 13 of 20) intron (NM_020939, intron 13 of 20) 3500 NM_001314020 57699 Hs.372129 NM_020939 ENSG00000124772 CPNE5 COPN5|CPN5 copine 5 protein-coding 242-440 chr9 125628447 125628656 + 2 NA intron (NM_001006619, intron 4 of 10) L1MB2|LINE|L1 78657 NM_001006618 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 668-3 chr1 111998546 111998998 + 2 NA TTS (NR_145438) TTS (NR_145438) 8236 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 251-192 chr2 180452043 180452244 + 2 NA Intergenic Intergenic -239961 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 342-100 chr11 128089978 128090166 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -118694 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 409-314 chr9 118611676 118611916 + 2 NA Intergenic L1ME3G|LINE|L1 -67875 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 280-188 chr2 28037285 28037460 + 2 NA intron (NM_199193, intron 6 of 13) L1ME4b|LINE|L1 41005 NR_036230 100422965 NR_036230 ENSG00000265321 MIR4263 - microRNA 4263 ncRNA 390-111 chr14 86569249 86569482 + 2 NA Intergenic L1PBa|LINE|L1 -336413 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 227-250 chr4 45698441 45698602 + 2 NA Intergenic Intergenic 425533 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 361-143 chr14 68412343 68412653 + 2 NA intron (NM_133509, intron 9 of 10) intron (NM_133509, intron 9 of 10) 216289 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 300-410 chr6 165880596 165880789 + 2 NA Intergenic Intergenic -106859 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 378-385 chr6 151535222 151535460 + 2 NA intron (NM_025059, intron 1 of 10) intron (NM_025059, intron 1 of 10) 41324 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 194-65 chr15 57832274 57832453 + 2 NA Intergenic Intergenic 125649 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 490-49 chr11 21448993 21449430 + 2 NA intron (NM_201551, intron 15 of 18) L1ME1|LINE|L1 -743874 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 185-50 chr13 37662885 37663034 + 2 NA intron (NM_003306, intron 6 of 10) intron (NM_003306, intron 6 of 10) -64115 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 173-122 chr6 155926299 155926436 + 2 NA Intergenic L1MB8|LINE|L1 -20430 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 307-302 chr3 48317933 48318176 + 2 NA intron (NM_001080525, intron 3 of 4) L1M4|LINE|L1 -1595 NR_031749 100313840 NR_031749 ENSG00000252466 MIR2115 - microRNA 2115 ncRNA 301-483 chr9 81271879 81272047 + 2 NA Intergenic MIRb|SINE|MIR 417572 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 226-397 chrX 130732394 130732574 + 2 NA intron (NM_182314, intron 3 of 15) L1MD1|LINE|L1 -70152 NR_135655 105373338 Hs.642023 NR_135655 LOC105373338 - uncharacterized LOC105373338 ncRNA 423-323 chrX 88858037 88858306 + 2 NA Intergenic L1PA15|LINE|L1 110946 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 213-174 chr3 29022854 29023059 + 2 NA Intergenic Intergenic 257983 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 216-5 chr1 50869282 50869469 + 2 NA intron (NM_007051, intron 1 of 18) L1MEc|LINE|L1 90892 NM_007051 11124 Hs.530402 NM_007051 ENSG00000185104 FAF1 CGI-03|HFAF1s|UBXD12|UBXN3A|hFAF1 Fas associated factor 1 protein-coding 632-108 chr7 97657500 97657967 + 2 NA Intergenic Intergenic -74353 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 368-51 chr10 43952797 43953056 + 2 NA intron (NR_033846, intron 5 of 7) L1MB8|LINE|L1 40524 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 473-253 chr7 12212332 12212710 + 2 NA intron (NM_001134232, intron 1 of 7) intron (NM_001134232, intron 1 of 7) 1227 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 441-30 chr10 99646686 99647097 + 2 NA Intergenic L1PB4|LINE|L1 -12618 NM_020354 57089 Hs.28326 NM_020354 ENSG00000198018 ENTPD7 LALP1 ectonucleoside triphosphate diphosphohydrolase 7 protein-coding 303-92 chr12 39240100 39240379 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 202881 NM_001173463 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 621-137 chr8 134568255 134568740 + 2 NA intron (NM_020863, intron 10 of 15) intron (NM_020863, intron 10 of 15) -29574 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 219-374 chr8 139438978 139439134 + 2 NA Intergenic L1M4|LINE|L1 264067 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 279-31 chr10 28755501 28755764 + 2 NA intron (NR_120652, intron 2 of 3) intron (NR_120652, intron 2 of 3) 11982 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 375-319 chr5 30319273 30319617 + 2 NA Intergenic Intergenic 438885 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 478-187 chr3 73947191 73947569 + 2 NA Intergenic Intergenic 138136 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 398-26 chr1 217284703 217285074 + 2 NA Intergenic L1MA5|LINE|L1 -147186 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 333-158 chr14 90166172 90166372 + 2 NA intron (NM_022054, intron 1 of 1) intron (NM_022054, intron 1 of 1) -90281 NM_002802 5700 Hs.356654 NM_002802 ENSG00000100764 PSMC1 P26S4|S4|p56 proteasome 26S subunit, ATPase 1 protein-coding 341-171 chr15 86920274 86920539 + 2 NA intron (NM_152336, intron 23 of 24) MLT1E2|LTR|ERVL-MaLR -12474 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 310-576 chrX 95550380 95550566 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -487247 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 328-407 chr4 84234615 84234891 + 2 NA intron (NR_125909, intron 5 of 8) intron (NR_125909, intron 5 of 8) 64416 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 315-363 chr5 12452491 12452710 + 2 NA Intergenic Intergenic -122257 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 289-250 chr2 195102254 195102466 + 2 NA Intergenic Intergenic 371765 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 309-363 chr3 135390995 135391234 + 2 NA Intergenic L1MEi|LINE|L1 -574614 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 367-21 chr1 106147583 106147874 + 2 NA Intergenic Intergenic -119475 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 285-104 chr13 76096841 76097024 + 2 NA Intergenic L1MA7|LINE|L1 -161800 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 520-233 chr5 45573695 45574050 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 122508 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 448-281 chr8 76942566 76942846 + 2 NA Intergenic L1M2|LINE|L1 24144 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 351-240 chr2 140598864 140599095 + 2 NA intron (NM_018557, intron 42 of 90) intron (NM_018557, intron 42 of 90) -12294 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 308-192 chr18 2349004 2349278 + 2 NA Intergenic Intergenic 222364 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 275-164 chr18 60971188 60971352 + 2 NA Intergenic Intergenic -362160 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 350-401 chr5 86736643 86736987 + 2 NA Intergenic L1MA4A|LINE|L1 -10003 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 270-270 chr4 83611441 83611607 + 2 NA Intergenic L1MA5|LINE|L1 75416 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 618-8 chr1 111863555 111864016 + 2 NA intron (NM_172198, intron 2 of 6) L2c|LINE|L2 -6880 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 241-182 chr2 49136580 49136726 + 2 NA intron (NM_000145, intron 1 of 9) L1MB7|LINE|L1 17862 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 377-107 chr13 74034877 74035139 + 2 NA intron (NM_007249, intron 1 of 7) intron (NM_007249, intron 1 of 7) 98921 NM_007249 11278 Hs.373857 NM_007249 ENSG00000118922 KLF12 AP-2rep|AP2REP|HSPC122 Kruppel like factor 12 protein-coding 344-256 chr2 160825719 160825983 + 2 NA Intergenic L1MA5|LINE|L1 -311104 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 408-35 chr1 247398311 247398516 + 2 NA Intergenic Intergenic -17743 NM_001127461 114548 Hs.159483 NM_004895 ENSG00000162711 NLRP3 AGTAVPRL|AII|AVP|C1orf7|CIAS1|CLR1.1|DFNA34|FCAS|FCAS1|FCU|KEFH|MWS|NALP3|PYPAF1 NLR family pyrin domain containing 3 protein-coding 463-48 chr10 130290289 130290578 + 2 NA Intergenic Intergenic 154024 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 260-66 chr10 116312891 116313110 + 2 NA Intergenic Intergenic -11448 NM_198515 374355 Hs.233407 NM_198515 ENSG00000182645 CCDC172 C10orf96 coiled-coil domain containing 172 protein-coding 523-206 chr4 109065779 109066170 + 2 NA intron (NM_198721, intron 3 of 36) intron (NM_198721, intron 3 of 36) 236684 NR_045756 84570 Hs.658842 NM_032518 ENSG00000188517 COL25A1 AMY|CFEOM5|CLAC|CLAC-P|CLACP collagen type XXV alpha 1 chain protein-coding 331-199 chr16 88398745 88399009 + 2 NA Intergenic Intergenic -28594 NM_001367624 84627 Hs.54925 NM_001127464 ENSG00000225614 ZNF469 BCS|BCS1 zinc finger protein 469 protein-coding 366-481 chrX 69335444 69335732 + 2 NA Intergenic L1M4|LINE|L1 156031 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 359-451 chr7 51246870 51247145 + 2 NA intron (NM_015198, intron 1 of 12) intron (NM_015198, intron 1 of 12) 69802 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 522-144 chr2 125208532 125208859 + 2 NA Intergenic Intergenic 909290 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 135-32 chr2 40773769 40773893 + 2 NA Intergenic Intergenic -261396 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 302-430 chr8 11185620 11185806 + 2 NA intron (NR_138154, intron 1 of 2) intron (NR_138154, intron 1 of 2) 15653 NR_138154 286046 Hs.657083 NM_173683 ENSG00000171044 XKR6 C8orf21|C8orf5|C8orf7|XRG6 XK related 6 protein-coding 345-490 chr7 30393129 30393380 + 2 NA intron (NR_108081, intron 1 of 2) L1ME1|LINE|L1 2369 NR_108081 100506516 NR_108081 ENSG00000281404 LINC01176 - long intergenic non-protein coding RNA 1176 ncRNA 464-171 chr3 124545133 124545461 + 2 NA intron (NM_001024660, intron 33 of 59) intron (NM_001024660, intron 33 of 59) -39361 NM_001322998 8997 Hs.8004 NM_003947 ENSG00000160145 KALRN ARHGEF24|CHD5|CHDS5|DUET|DUO|HAPIP|TRAD kalirin RhoGEF kinase protein-coding 579-52 chr17 30483483 30483801 + 2 NA intron (NM_004871, intron 2 of 8) intron (NM_004871, intron 2 of 8) 6234 NM_001007025 9527 Hs.462680 NM_004871 ENSG00000108587 GOSR1 GOLIM2|GOS-28|GOS28|GOS28/P28|GS28|P28 golgi SNAP receptor complex member 1 protein-coding 342-254 chr2 133264834 133265102 + 2 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -1227 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 346-376 chr5 12200262 12200503 + 2 NA Intergenic Intergenic -295936 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 220-320 chr6 92222466 92222629 + 2 NA Intergenic Intergenic -532119 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 581-78 chr2 67763329 67763805 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 61995 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 682-7 chr10 16035192 16035839 + 2 NA Intergenic L1MDa|LINE|L1 -174982 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 319-202 chr18 34212780 34213023 + 2 NA intron (NM_001353232, intron 1 of 9) MLT1E1A|LTR|ERVL-MaLR 9569 NM_001282527 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 629-71 chr2 229620079 229620549 + 2 NA intron (NM_139072, intron 1 of 12) intron (NM_139072, intron 1 of 12) 94241 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 263-190 chr2 29409369 29409529 + 2 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) 65928 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 378-428 chr8 31820222 31820435 + 2 NA intron (NM_013962, intron 1 of 4) LTR40A1|LTR|ERVL 180576 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 138 chr1 14362389 14362467 + 2 NA intron (NR_149058, intron 3 of 4) MLT1E|LTR|ERVL-MaLR 57545 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 311-133 chr14 47314526 47314825 + 2 NA intron (NM_001113498, intron 1 of 16) AluJr|SINE|Alu 28571 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 336-68 chr10 58977273 58977533 + 2 NA Intergenic L1MA9|LINE|L1 -22115 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 269-358 chr6 125106968 125107143 + 2 NA Intergenic Intergenic -46718 NM_001003396 7164 Hs.591347 NM_003287 ENSG00000111907 TPD52L1 D53 TPD52 like 1 protein-coding 575-203 chr8 125857814 125858371 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 93105 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 348-279 chr22 40487322 40487539 + 2 NA intron (NM_020831, intron 3 of 14) MIRc|SINE|MIR -23990 NM_001282660 57591 Hs.654688 NM_020831 ENSG00000196588 MRTFA BSAC|MAL|MKL|MKL1|MRTF-A myocardin related transcription factor A protein-coding 376-355 chr6 149126944 149127221 + 2 NA Intergenic L1MD1|LINE|L1 -90842 NR_125861 23118 Hs.269775 NM_015093 ENSG00000055208 TAB2 CHTD2|MAP3K7IP2|TAB-2 TGF-beta activated kinase 1 (MAP3K7) binding protein 2 protein-coding 460-218 chr4 36502422 36502696 + 2 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) -76131 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 244-198 chr20 32390572 32390730 + 2 NA intron (NM_015338, intron 3 of 11) L1ME1|LINE|L1 31586 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 488-112 chr18 50591948 50592373 + 2 NA intron (NM_001292039, intron 1 of 4) intron (NM_001292039, intron 1 of 4) 32073 NM_001292039 5596 Hs.433728 NM_002747 ENSG00000141639 MAPK4 ERK-4|ERK4|PRKM4|p63-MAPK|p63MAPK mitogen-activated protein kinase 4 protein-coding 569-42 chr11 106057025 106057452 + 2 NA intron (NM_001330359, intron 2 of 2) intron (NM_001330359, intron 2 of 2) 20109 NM_198439 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 248-422 chr8 142722626 142722833 + 2 NA intron (NR_038925, intron 1 of 2) PABL_B-int|LTR|ERV1 4244 NR_038925 100288181 Hs.716823 NR_038925 ENSG00000253741 LNCOC1 Lnc-OC1 lncRNA associated with ovarian cancer 1 ncRNA 160-54 chr21 33740398 33740511 + 2 NA intron (NM_001331012, intron 5 of 28) L2a|LINE|L2 97953 NM_001331010 6453 Hs.90221 NM_003024 ENSG00000205726 ITSN1 ITSN|SH3D1A|SH3P17 intersectin 1 protein-coding 306-8 chr1 60190235 60190417 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -116556 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 338-171 chr14 79140631 79140808 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -59263 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 280-224 chr2 209376090 209376288 + 2 NA Intergenic Intergenic -47858 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 415-157 chr20 33507225 33507534 + 2 NA intron (NM_001032999, intron 1 of 10) intron (NM_001032999, intron 1 of 10) 17283 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 346-491 chr8 91913785 91913990 + 2 NA Intergenic L2c|LINE|L2 103793 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 320-240 chr19 39276076 39276351 + 2 NA Intergenic LTR47A|LTR|ERVL 7696 NM_172138 282616 Hs.567792 NM_172138 ENSG00000183709 IFNL2 IL-28A|IL28A interferon lambda 2 protein-coding 164-10 chr1 246026065 246026226 + 2 NA intron (NM_022743, intron 5 of 11) AluSx1|SINE|Alu 391267 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 531-38 chr11 92373243 92373648 + 2 NA intron (NM_001008781, intron 1 of 24) MIR|SINE|MIR 21349 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 494-237 chr5 136552465 136552797 + 2 NA Intergenic L1M2a|LINE|L1 -187155 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 353-104 chr12 23568419 23568661 + 2 NA intron (NM_152989, intron 13 of 17) L2|LINE|L2 16046 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 270-188 chr2 117986332 117986600 + 2 NA intron (NM_019044, intron 6 of 23) intron (NM_019044, intron 6 of 23) 27604 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 352-156 chr14 87070809 87071042 + 2 NA Intergenic Intergenic 165147 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 242-19 chr1 168466763 168466925 + 2 NA intron (NR_125956, intron 4 of 4) intron (NR_125956, intron 4 of 4) 28800 NR_125956 101928565 Hs.563806 NR_125956 ENSG00000228697 LOC101928565 - uncharacterized LOC101928565 ncRNA 680-36 chr14 53786820 53787212 + 2 NA Intergenic LTR85a|LTR|Gypsy? 161468 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 354-407 chr6 119502447 119502647 + 2 NA Intergenic Intergenic -11245 NR_046100 285762 Hs.571063 NR_046100 LOC285762 - uncharacterized LOC285762 ncRNA 434-20 chr1 180379789 180380077 + 2 NA intron (NM_032360, intron 6 of 7) L1MA4A|LINE|L1 58457 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 204-289 chr8 111959761 111959923 + 2 NA Intergenic L1M6|LINE|L1 583203 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 381-303 chr5 29272573 29272781 + 2 NA Intergenic L1PA7|LINE|L1 123299 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 423-16 chr1 117906030 117906367 + 2 NA intron (NM_001135589, intron 6 of 12) intron (NM_001135589, intron 6 of 12) 23423 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 414-312 chr7 85349007 85349287 + 2 NA Intergenic Intergenic -71975 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 416-109 chr13 84372279 84372578 + 2 NA intron (NR_046871, intron 3 of 6) intron (NR_046871, intron 3 of 6) 231826 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 523-195 chr4 30807073 30807396 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 86865 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 181-91 chr3 59310189 59310334 + 2 NA Intergenic Intergenic -260229 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 301-312 chr4 55241101 55241286 + 2 NA Intergenic L1MA7|LINE|L1 -105049 NM_024592 79644 Hs.39311 NM_024592 ENSG00000128039 SRD5A3 CDG1P|CDG1Q|KRIZI|SRD5A2L|SRD5A2L1 steroid 5 alpha-reductase 3 protein-coding 792-4 chr1 206876806 206877411 + 2 NA Intergenic Intergenic 11299 NM_018724 50604 Hs.272373 NM_018724 ENSG00000162891 IL20 IL-20|IL10D|ZCYTO10 interleukin 20 protein-coding 361-145 chr14 74847395 74847696 + 2 NA Intergenic Intergenic 16289 NM_001080408 283571 Hs.675293 NM_001080408 ENSG00000119608 PROX2 PROX-2 prospero homeobox 2 protein-coding 330-62 chr10 60016117 60016435 + 2 NA Intergenic Intergenic -55363 NR_024340 283025 Hs.522955 NM_001017982 ENSG00000235931 LINC01553 C10orf40 long intergenic non-protein coding RNA 1553 ncRNA 219-2 chr1 24594089 24594269 + 2 NA intron (NM_001010980, intron 1 of 3) AluSx1|SINE|Alu 38092 NM_001010980 400746 Hs.200253 NM_001010980 ENSG00000184454 NCMAP C1orf130|MP11 non-compact myelin associated protein protein-coding 475-14 chr1 207157272 207157610 + 2 NA Intergenic Intergenic 53208 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 430-215 chr4 79739226 79739539 + 2 NA Intergenic MER67D|LTR|ERV1 -88089 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 216-23 chr1 176280998 176281154 + 2 NA Intergenic Intergenic -73790 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 338-113 chr11 113517647 113517946 + 2 NA Intergenic MLT2D|LTR|ERVL -42398 NM_000795 1813 Hs.73893 NM_000795 ENSG00000149295 DRD2 D2DR|D2R dopamine receptor D2 protein-coding 353-148 chr14 71274903 71275149 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -45450 NM_001354286 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 510-234 chr5 156452608 156452947 + 2 NA intron (NM_001128209, intron 2 of 7) L3|LINE|CR1 125613 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 217-202 chr20 15574398 15574548 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 348841 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 742-27 chr15 49654255 49654804 + 2 NA 3' UTR (NM_001144955, exon 5 of 5) 3' UTR (NM_001144955, exon 5 of 5) 33481 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 145-7 chr1 237678344 237678423 + 2 NA intron (NM_001035, intron 61 of 104) intron (NM_001035, intron 61 of 104) -183792 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 485-6 chr1 49087586 49087962 + 2 NA intron (NM_001323575, intron 4 of 12) L1PA15|LINE|L1 -169637 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 421-50 chr12 18116686 18116952 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -26626 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 298-137 chr15 33654691 33654956 + 2 NA intron (NM_001243996, intron 32 of 102) intron (NM_001243996, intron 32 of 102) -313674 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 728-86 chr7 13826164 13826615 + 2 NA Intergenic MIR3|SINE|MIR 160125 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 320-453 chr5 108413837 108414123 + 2 NA Intergenic LTR37A|LTR|ERV1 -31882 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 482-37 chr10 76293297 76293741 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 510758 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 296-445 chr7 89019646 89019824 + 2 NA intron (NM_181646, intron 1 of 3) L1MA5A|LINE|L1 -223998 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 520-232 chr5 39512087 39512471 + 2 NA Intergenic Intergenic -8152 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 358-13 chr1 113884353 113884618 + 2 NA intron (NM_001010922, intron 2 of 3) L1MC4|LINE|L1 3096 NM_001010922 440603 Hs.123106 NM_001010922 ENSG00000188761 BCL2L15 Bfk|C1orf178 BCL2 like 15 protein-coding 112-9 chr12 33007496 33007600 + 2 NA Intergenic Intergenic -110702 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 467-40 chr11 5889994 5890315 + 2 NA Intergenic Intergenic 5861 NM_001005165 390081 Hs.553739 NM_001005165 ENSG00000180974 OR52E4 OR11-55 olfactory receptor family 52 subfamily E member 4 protein-coding 321-590 chr9 26036812 26036981 + 2 NA Intergenic Intergenic -29779 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 150-22 chr11 79022587 79022680 + 2 NA intron (NM_001098816, intron 6 of 33) intron (NM_001098816, intron 6 of 33) 379476 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 575-55 chr14 72177727 72178076 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 244374 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 165-118 chr6 156368862 156368968 + 2 NA Intergenic Intergenic -9835 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 338-189 chr16 9136128 9136412 + 2 NA Intergenic L1MB7|LINE|L1 44626 NM_014117 29035 Hs.221497 NM_014117 ENSG00000182831 C16orf72 PRO0149 chromosome 16 open reading frame 72 protein-coding 293-6 chr1 75456154 75456345 + 2 NA intron (NM_001320285, intron 2 of 25) L1PA16|LINE|L1 154865 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 223-357 chr8 139949551 139949700 + 2 NA intron (NM_001160372, intron 19 of 22) L1MB8|LINE|L1 150910 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 299-406 chr6 158271095 158271313 + 2 NA Intergenic Intergenic -41261 NM_001007466 56995 Hs.486993 NM_020245 ENSG00000130338 TULP4 TUSP TUB like protein 4 protein-coding 482-233 chr6 154357267 154357573 + 2 NA promoter-TSS (NM_001130700) promoter-TSS (NM_001130700) -654 NM_001130700 26034 Hs.146100 NM_015553 ENSG00000074706 IPCEF1 PIP3-E interaction protein for cytohesin exchange factors 1 protein-coding 344-341 chr3 194885495 194885795 + 2 NA Intergenic Intergenic -116936 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 302-20 chr1 173175607 173175822 + 2 NA Intergenic Intergenic 29818 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 350-214 chr2 45397172 45397484 + 2 NA intron (NM_018079, intron 19 of 20) intron (NM_018079, intron 19 of 20) -142387 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 535-173 chr3 175421760 175422140 + 2 NA intron (NM_207015, intron 5 of 13) L2a|LINE|L2 52410 NR_039952 100616395 NR_039952 ENSG00000264974 MIR4789 - microRNA 4789 ncRNA 225-313 chr6 140991897 140992082 + 2 NA Intergenic L1ME1|LINE|L1 308175 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 227-374 chr8 103712496 103712712 + 2 NA intron (NM_001348497, intron 2 of 22) LTR89|LTR|ERVL? -106616 NM_001348505 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 310-201 chr18 46453586 46453868 + 2 NA intron (NM_152470, intron 6 of 7) intron (NM_152470, intron 6 of 7) 65359 NM_001173129 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 308-255 chr2 180501993 180502266 + 2 NA Intergenic Intergenic -189975 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 465-99 chr16 78883863 78884235 + 2 NA intron (NM_001291997, intron 7 of 7) AluJb|SINE|Alu 716688 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 254-137 chr16 7458749 7458921 + 2 NA intron (NM_145893, intron 1 of 13) L2a|LINE|L2 125990 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 592-129 chr4 97038443 97038977 + 2 NA Intergenic L1MEf|LINE|L1 -328216 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 311-41 chr10 9847985 9848252 + 2 NA Intergenic Intergenic -210604 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 341-104 chr12 4067808 4068123 + 2 NA Intergenic L1MC1|LINE|L1 -194517 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 267-247 chr3 24305440 24305626 + 2 NA intron (NM_001354710, intron 2 of 10) intron (NM_001354710, intron 2 of 10) 154209 NR_121667 101927854 Hs.570625 NR_121667 LOC101927854 - uncharacterized LOC101927854 ncRNA 378-94 chr11 114486996 114487259 + 2 NA Intergenic L1MA3|LINE|L1 47660 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 494-128 chr2 60161612 60161954 + 2 NA Intergenic AluSx1|SINE|Alu 221253 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 537-256 chr8 111436948 111437359 + 2 NA intron (NR_146282, intron 2 of 3) intron (NR_146282, intron 2 of 3) 60514 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 273-349 chr5 29740375 29740532 + 2 NA Intergenic L1PA15|LINE|L1 -140107 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 333-230 chr2 41487744 41488025 + 2 NA Intergenic Intergenic -389671 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 846-29 chr20 39727364 39728047 + 2 NA Intergenic Intergenic -276756 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 326-345 chr3 99261431 99261601 + 2 NA Intergenic HERVL-int|LTR|ERVL -359821 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 218-338 chr8 136014580 136014711 + 2 NA Intergenic Intergenic -516153 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 353-271 chr2 219653714 219653985 + 2 NA Intergenic L1MD3|LINE|L1 26219 NM_005070 6508 Hs.1176 NM_005070 ENSG00000114923 SLC4A3 AE3|CAE3/BAE3|SLC2C solute carrier family 4 member 3 protein-coding 180-150 chr6 131268854 131268964 + 2 NA intron (NM_138633, intron 2 of 2) intron (NM_138633, intron 2 of 2) 18505 NM_004842 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 257-361 chr6 92546101 92546288 + 2 NA Intergenic Intergenic -855766 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 274-299 chr5 3929654 3929854 + 2 NA Intergenic Intergenic 333922 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 234-52 chr10 123872082 123872238 + 2 NA intron (NM_198148, intron 2 of 13) L1ME3|LINE|L1 19647 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 303-319 chr4 77583826 77584075 + 2 NA intron (NM_006419, intron 1 of 4) intron (NM_006419, intron 1 of 4) 72197 NM_006419 10563 Hs.100431 NM_006419 ENSG00000156234 CXCL13 ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 C-X-C motif chemokine ligand 13 protein-coding 360-233 chr2 126496287 126496561 + 2 NA Intergenic L1M4|LINE|L1 -159511 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 391-373 chr9 22115210 22115587 + 2 NA intron (NR_003529, intron 16 of 18) MER94|DNA|hAT-Blackjack -106085 NM_078487 1030 Hs.72901 NM_004936 ENSG00000147883 CDKN2B CDK4I|INK4B|MTS2|P15|TP15|p15INK4b cyclin dependent kinase inhibitor 2B protein-coding 246-161 chr18 4572224 4572390 + 2 NA Intergenic L1PB4|LINE|L1 -117000 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 349-490 chr8 24759848 24760038 + 2 NA Intergenic L1M2a|LINE|L1 -153818 NM_005382 4741 Hs.458657 NM_005382 ENSG00000104722 NEFM NEF3|NF-M|NFM neurofilament medium protein-coding 260-338 chr5 19123931 19124177 + 2 NA Intergenic Intergenic 762218 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 255-160 chr17 53103845 53104076 + 2 NA Intergenic L1M5|LINE|L1 118455 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 328-521 chr7 4017665 4017911 + 2 NA intron (NM_152744, intron 17 of 44) intron (NM_152744, intron 17 of 44) -111897 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 373-160 chr17 68744204 68744423 + 2 NA Intergenic Intergenic 116159 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 283-405 chr7 7052393 7052606 + 2 NA Intergenic AluJr4|SINE|Alu 14546 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 444-179 chr4 126094604 126094957 + 2 NA Intergenic L1MC2|LINE|L1 587521 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 337-501 chr6 123845667 123845985 + 2 NA intron (NM_001040214, intron 1 of 6) intron (NM_001040214, intron 1 of 6) 41961 NM_001040214 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 214-313 chr8 35322378 35322553 + 2 NA intron (NM_080872, intron 1 of 16) intron (NM_080872, intron 1 of 16) 86990 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 295-270 chr21 31743056 31743295 + 2 NA Intergenic L1MEc|LINE|L1 -11057 NM_001145445 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 204-210 chr3 195471514 195471660 + 2 NA Intergenic Intergenic -28567 NM_012287 23527 Hs.593373 NM_012287 ENSG00000114331 ACAP2 CENTB2|CNT-B2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 345-371 chr3 194793588 194793876 + 2 NA Intergenic L1MA4A|LINE|L1 -25023 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 280-339 chr5 145432991 145433176 + 2 NA Intergenic Intergenic 402259 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 349-167 chr14 77252029 77252303 + 2 NA intron (NM_020431, intron 22 of 23) intron (NM_020431, intron 22 of 23) -14052 NR_031661 100302236 NR_031661 ENSG00000221754 MIR1260A MIR1260|MIRN1260|hsa-mir-1260|hsa-mir-1260a|mir-1260a microRNA 1260a ncRNA 378-252 chr2 223072001 223072275 + 2 NA Intergenic Intergenic 20208 NM_080671 23704 Hs.348522 NM_080671 ENSG00000152049 KCNE4 MIRP3 potassium voltage-gated channel subfamily E regulatory subunit 4 protein-coding 262-177 chr18 4670176 4670365 + 2 NA Intergenic L1PA15|LINE|L1 -214963 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 382-213 chr2 117597052 117597363 + 2 NA Intergenic L1PB1|LINE|L1 -217484 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 308-233 chr2 82020147 82020413 + 2 NA Intergenic L1MA4|LINE|L1 -553334 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 555-94 chr2 79552514 79552938 + 2 NA intron (NM_001282598, intron 1 of 17) MSTA-int|LTR|ERVL-MaLR 29543 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 323-134 chr14 29652520 29652716 + 2 NA intron (NM_002742, intron 4 of 17) intron (NM_002742, intron 4 of 17) 274478 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 849-23 chr2 196018773 196019454 + 2 NA intron (NM_018897, intron 9 of 64) intron (NM_018897, intron 9 of 64) 49724 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 569-102 chr2 147280515 147281031 + 2 NA Intergenic Intergenic -563744 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 489-47 chr11 114524977 114525402 + 2 NA intron (NM_152315, intron 4 of 5) LTR47A|LTR|ERVL 34692 NM_001367953 120400 Hs.550126 NM_152315 ENSG00000095110 NXPE1 FAM55A neurexophilin and PC-esterase domain family member 1 protein-coding 374-214 chr2 230290093 230290304 + 2 NA intron (NM_001278453, intron 15 of 23) intron (NM_001278453, intron 15 of 23) -36973 NM_001352893 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 326-312 chr22 27272316 27272510 + 2 NA Intergenic MIR|SINE|MIR -38238 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 165-135 chr8 139836824 139836951 + 2 NA intron (NM_001160372, intron 21 of 22) intron (NM_001160372, intron 21 of 22) -133764 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 368-5 chr1 42237450 42237672 + 2 NA intron (NM_001198850, intron 4 of 12) L1ME1|LINE|L1 -72816 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 296-489 chr8 134107961 134108220 + 2 NA Intergenic LTR16C|LTR|ERVL 221594 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 345-52 chr10 33819356 33819633 + 2 NA Intergenic Intergenic -46814 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 580-37 chr12 17151678 17152112 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 163148 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 432-73 chr13 40583459 40583805 + 2 NA intron (NM_002015, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 83009 NM_002015 2308 Hs.370666 NM_002015 ENSG00000150907 FOXO1 FKH1|FKHR|FOXO1A forkhead box O1 protein-coding 545-38 chr11 50383356 50383743 + 2 NA Intergenic ALR/Alpha|Satellite|centr -25598 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 325-141 chr12 125951235 125951425 + 2 NA Intergenic MIR|SINE|MIR 32044 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 481-304 chr8 134174574 134175030 + 2 NA Intergenic Intergenic 288306 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 386-176 chr2 84363175 84363399 + 2 NA Intergenic L1PB2|LINE|L1 72605 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 197-225 chr9 28202611 28202738 + 2 NA intron (NM_152570, intron 5 of 6) MIRb|SINE|MIR 516631 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 378-197 chr18 61785644 61785881 + 2 NA Intergenic Intergenic 37586 NR_103449 100996669 Hs.586981 NR_103449 LINC01544 - long intergenic non-protein coding RNA 1544 ncRNA 611-134 chr6 168014017 168014431 + 2 NA Intergenic Intergenic -3649 NM_030615 3834 Hs.150013 NM_005355 ENSG00000125337 KIF25 KNSL3 kinesin family member 25 protein-coding 713-76 chr7 39546671 39547169 + 2 NA Intergenic AluSz|SINE|Alu -19484 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 317-275 chr20 39714518 39714792 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -289806 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 340-29 chr1 213809240 213809549 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -115355 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 205-167 chr21 18451146 18451345 + 2 NA Intergenic Intergenic -47460 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 318-422 chr4 170198722 170198983 + 2 NA Intergenic Intergenic -27739 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 143-53 chr3 28968724 28968819 + 2 NA Intergenic L1MA4A|LINE|L1 312168 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 438-119 chr2 60509738 60510141 + 2 NA intron (NM_138559, intron 2 of 4) L2a|LINE|L2 43559 NM_001365609 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 371-43 chr10 43698049 43698358 + 2 NA Intergenic Intergenic -49322 NM_006973 7580 Hs.522885 NM_006973 ENSG00000169740 ZNF32 KOX30 zinc finger protein 32 protein-coding 193-55 chr14 41047762 41047940 + 2 NA intron (NR_109758, intron 3 of 3) intron (NR_109758, intron 3 of 3) 93140 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 201-111 chr2 9243710 9243843 + 2 NA intron (NM_003887, intron 1 of 27) L2c|LINE|L2 36964 NM_003887 8853 Hs.555902 NM_003887 ENSG00000151693 ASAP2 AMAP2|CENTB3|DDEF2|PAG3|PAP|Pap-alpha|SHAG1 ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 protein-coding 200-95 chr16 35654895 35655078 + 2 NA Intergenic ALR/Alpha|Satellite|centr -91566 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 418-72 chr14 65758667 65758973 + 2 NA Intergenic L1M2|LINE|L1 287718 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 489-221 chr5 170450998 170451315 + 2 NA intron (NM_001034838, intron 1 of 7) MER90a|LTR|ERV1 -52864 NM_001034837 30820 Hs.484111 NM_014592 ENSG00000182132 KCNIP1 KCHIP1|VABP potassium voltage-gated channel interacting protein 1 protein-coding 545-35 chr11 19587744 19588091 + 2 NA intron (NM_001111018, intron 1 of 37) intron (NM_001111018, intron 1 of 37) 12607 NR_039706 100616118 NR_039706 ENSG00000265210 MIR4486 - microRNA 4486 ncRNA 257-228 chr2 218115351 218115537 + 2 NA Intergenic HERVK9-int|LTR|ERVK -9850 NM_001168298 3579 Hs.846 NM_001557 ENSG00000180871 CXCR2 CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB C-X-C motif chemokine receptor 2 protein-coding 319-498 chr7 39716592 39716851 + 2 NA Intergenic L2c|LINE|L2 -16847 NR_026999 349114 Hs.414183 NM_198284 LINC00265 NCRNA00265 long intergenic non-protein coding RNA 265 ncRNA 523-260 chr8 29549859 29550354 + 2 NA Intergenic HAL1|LINE|L1 198003 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 491-57 chr12 132906142 132906527 + 2 NA Intergenic Intergenic 18492 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 192-206 chr8 81854975 81855093 + 2 NA Intergenic L2c|LINE|L2 -12748 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 368-37 chr10 5185433 5185720 + 2 NA promoter-TSS (NR_027916) promoter-TSS (NR_027916) -389 NR_027916 340811 Hs.282513 NM_001007536 ENSG00000264006 AKR1C8P AKR1CL1 aldo-keto reductase family 1 member C8, pseudogene pseudo 451-96 chr18 3044636 3045040 + 2 NA Intergenic Intergenic -32891 NM_014646 9663 Hs.132342 NM_014646 ENSG00000101577 LPIN2 - lipin 2 protein-coding 267-144 chr17 34720303 34720478 + 2 NA Intergenic L2b|LINE|L2 139641 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 251-207 chr21 14637979 14638143 + 2 NA intron (NM_001256579, intron 1 of 6) intron (NM_001256579, intron 1 of 6) 5046 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 364-138 chr14 94970076 94970343 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 163294 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 299-315 chr4 33365474 33365623 + 2 NA Intergenic Intergenic 674345 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 266-398 chr7 64423151 64423405 + 2 NA Intergenic L1M2|LINE|L1 -10415 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 306-150 chr14 65636944 65637100 + 2 NA intron (NM_004480, intron 5 of 9) intron (NM_004480, intron 5 of 9) 165920 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 345-557 chr9 85397723 85398066 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 344135 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 364-292 chr4 1466909 1467203 + 2 NA Intergenic Intergenic -60614 NM_001290079 54729 Hs.526396 NM_001290079 ENSG00000235608 NKX1-1 HSPX153|NKX-1.1|SAX2 NK1 homeobox 1 protein-coding 218-277 chr5 141185832 141185991 + 2 NA 3' UTR (NM_020957, exon 1 of 1) 3' UTR (NM_020957, exon 1 of 1) -1250 NM_019119 56127 Hs.662726 NM_019119 ENSG00000177839 PCDHB9 PCDH-BETA9|PCDH3H protocadherin beta 9 protein-coding 263-291 chr4 70622705 70622874 + 2 NA Intergenic (TTATA)n|Simple_repeat|Simple_repeat -5955 NM_031889 10117 Hs.667018 NM_031889 ENSG00000132464 ENAM ADAI|AI1C|AIH2 enamelin protein-coding 413-279 chr7 83491431 83491683 + 2 NA intron (NM_012431, intron 1 of 16) intron (NM_012431, intron 1 of 16) 149874 NM_001178129 9723 Hs.440730 NM_012431 ENSG00000170381 SEMA3E M-SEMAH|M-SemaK|SEMAH|coll-5 semaphorin 3E protein-coding 746-40 chr2 77629148 77629760 + 2 NA Intergenic Intergenic -107021 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 300-244 chr20 46659070 46659324 + 2 NA intron (NM_001193340, intron 2 of 12) L1M4a2|LINE|L1 -7738 NM_022829 64849 Hs.655498 NM_022829 ENSG00000158296 SLC13A3 ARLIAK|NADC3|SDCT2 solute carrier family 13 member 3 protein-coding 302-87 chr11 104866526 104866791 + 2 NA Intergenic L2c|LINE|L2 32012 NR_034063 100506742 Hs.476989 NM_001191016 ENSG00000204403 CASP12 CASP-12|CASP12P1 caspase 12 (gene/pseudogene) protein-coding 365-16 chr1 106348344 106348567 + 2 NA Intergenic MER61-int|LTR|ERV1 -320202 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 320-294 chr2 222422398 222422691 + 2 NA Intergenic Intergenic -1444 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 443-273 chr7 6120797 6121171 + 2 NA intron (NM_032172, intron 3 of 17) L1ME1|LINE|L1 16035 NM_032172 84132 Hs.31856 NM_032172 ENSG00000106346 USP42 - ubiquitin specific peptidase 42 protein-coding 279-201 chr2 162764712 162764928 + 2 NA intron (NM_033272, intron 2 of 15) intron (NM_033272, intron 2 of 15) -4116 NR_110258 101929570 Hs.470445 NR_110258 ENSG00000237750 LOC101929570 - uncharacterized LOC101929570 ncRNA 344-173 chr16 49653151 49653473 + 2 NA intron (NM_001271620, intron 3 of 7) (A)n|Simple_repeat|Simple_repeat 11012 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 337-367 chr3 130406179 130406446 + 2 NA exon (NM_153264, exon 17 of 40) exon (NM_153264, exon 17 of 40) 60796 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 912-37 chr5 158661964 158662673 + 2 NA Intergenic L1MB7|LINE|L1 -252545 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 312-209 chr18 70166917 70167203 + 2 NA intron (NM_001318520, intron 12 of 47) intron (NM_001318520, intron 12 of 47) 38627 NM_001318520 25914 Hs.654809 NM_173630 ENSG00000176225 RTTN MSSP rotatin protein-coding 277-72 chr11 47912326 47912584 + 2 NA Intergenic LTR107_Mam|LTR|LTR -63911 NM_015231 23279 Hs.643526 NM_015231 ENSG00000030066 NUP160 NPHS19 nucleoporin 160 protein-coding 590-129 chr5 16329759 16330103 + 2 NA Intergenic L1MC1|LINE|L1 111171 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 345-307 chr20 16139541 16139834 + 2 NA Intergenic L1MB7|LINE|L1 -153805 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 327-222 chr19 29234279 29234489 + 2 NA Intergenic L2b|LINE|L2 -21233 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 230-60 chr11 79031890 79032054 + 2 NA intron (NM_001098816, intron 6 of 33) MER20|DNA|hAT-Charlie 370137 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 417-106 chr17 52808832 52809240 + 2 NA Intergenic LOR1a|LTR|ERV1 -53085 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 212-197 chr22 25701775 25701981 + 2 NA intron (NM_001362778, intron 12 of 19) intron (NM_001362778, intron 12 of 19) -40310 NM_001318245 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 396-144 chr19 37809343 37809672 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -7904 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 368-205 chr18 11594727 11594970 + 2 NA Intergenic Charlie13a|DNA|hAT-Charlie -14710 NM_001282300 646000 NM_001282300 ENSG00000236396 SLC35G4 AMAC1L1|SLC35G4P solute carrier family 35 member G4 protein-coding 157-112 chr6 120478463 120478588 + 2 NA Intergenic L1MB1|LINE|L1 463346 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 248-236 chr3 16690740 16690900 + 2 NA Intergenic LOR1-int|LTR|ERV1 -85397 NM_001351 1618 Hs.131179 NM_001351 ENSG00000092345 DAZL DAZH|DAZL1|DAZLA|SPGYLA deleted in azoospermia like protein-coding 247-62 chr11 81615806 81615985 + 2 NA Intergenic L1MA5|LINE|L1 274941 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 228-199 chr21 24684732 24684910 + 2 NA Intergenic Intergenic -155729 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 521-137 chr2 234265494 234265898 + 2 NA Intergenic LTR48|LTR|ERV1 188899 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 349-209 chr17 60728101 60728404 + 2 NA intron (NM_001330413, intron 5 of 25) L1MC1|LINE|L1 50401 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 285-165 chr18 34015821 34016070 + 2 NA intron (NM_001353232, intron 6 of 9) L2a|LINE|L2 32667 NM_001198549 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 334-555 chr8 137322125 137322376 + 2 NA Intergenic Intergenic 91338 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 270-117 chr14 86818353 86818523 + 2 NA Intergenic L2a|LINE|L2 -87340 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 503-301 chr9 30409342 30409699 + 2 NA Intergenic L1MA4|LINE|L1 -1066 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 271-21 chr1 177978664 177978898 + 2 NA intron (NR_151492, intron 8 of 22) intron (NR_151492, intron 8 of 22) 5522 NM_001356500 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 322-384 chr4 100136492 100136710 + 2 NA Intergenic Intergenic -53432 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 327-516 chr9 27740064 27740291 + 2 NA Intergenic L1PA14|LINE|L1 -166311 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 484-269 chr8 116132636 116132988 + 2 NA intron (NR_046215, intron 4 of 13) MLT1G1|LTR|ERVL-MaLR 192247 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 165-13 chr11 23643252 23643343 + 2 NA Intergenic Intergenic -224107 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 341-249 chr2 68902691 68902963 + 2 NA Intergenic L1MA4|LINE|L1 -31430 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 191-166 chr5 39419013 39419171 + 2 NA intron (NM_001343, intron 1 of 14) intron (NM_001343, intron 1 of 14) 5888 NM_001343 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 259-185 chr2 17191560 17191750 + 2 NA Intergenic Intergenic 326785 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 229-308 chr5 81332471 81332623 + 2 NA exon (NM_130767, exon 13 of 15) exon (NM_130767, exon 13 of 15) 30960 NM_001131035 84240 Hs.15536 NM_032280 ENSG00000131732 ZCCHC9 PPP1R41 zinc finger CCHC-type containing 9 protein-coding 359-171 chr16 63728905 63729199 + 2 NA Intergenic Intergenic 1393011 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 200-47 chr11 40975083 40975205 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 484492 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 249-316 chr5 4886426 4886583 + 2 NA Intergenic Intergenic 113023 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 415-125 chr2 64933110 64933483 + 2 NA promoter-TSS (NR_036586) promoter-TSS (NR_036586) -849 NR_036586 400958 Hs.591565 NR_036586 LINC02245 - long intergenic non-protein coding RNA 2245 ncRNA 309-499 chr6 166491019 166491301 + 2 NA intron (NM_001006932, intron 9 of 21) intron (NM_001006932, intron 9 of 21) 18273 NR_031734 100302141 NR_031734 ENSG00000222958 MIR1913 MIRN1913|hsa-mir-1913 microRNA 1913 ncRNA 223-158 chr2 83659056 83659248 + 2 NA Intergenic L1MB8|LINE|L1 136338 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 366-280 chr3 97056062 97056384 + 2 NA intron (NM_001080448, intron 3 of 17) MER94|DNA|hAT-Blackjack 241629 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 356-36 chr1 247057898 247058125 + 2 NA intron (NM_033213, intron 1 of 3) L1MA3|LINE|L1 20800 NM_033213 93474 Hs.732305 NM_033213 ENSG00000277462 ZNF670 - zinc finger protein 670 protein-coding 307-490 chr8 126092974 126093228 + 2 NA Intergenic L1M8|LINE|L1 -141904 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 624-82 chr3 68063372 68063851 + 2 NA intron (NM_001252216, intron 2 of 4) Charlie4a|DNA|hAT-Charlie 59364 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 421-14 chr1 173145086 173145485 + 2 NA Intergenic L1PA14|LINE|L1 60247 NM_001297562 7292 Hs.181097 NM_003326 ENSG00000117586 TNFSF4 CD134L|CD252|GP34|OX-40L|OX4OL|TNLG2B|TXGP1 TNF superfamily member 4 protein-coding 367-46 chr10 42662353 42662590 + 2 NA Intergenic L1MA9|LINE|L1 -23634 NR_130950 7582 Hs.435774 NM_006955 ENSG00000196693 ZNF33B KOX2|KOX31|ZNF11B zinc finger protein 33B protein-coding 350-517 chr8 91375344 91375676 + 2 NA intron (NM_134266, intron 15 of 18) L1PA17|LINE|L1 126191 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 576-151 chr6 76456893 76457260 + 2 NA Intergenic Intergenic 136547 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 121-41 chr3 73630215 73630287 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -5310 NM_015009 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 337-460 chr5 128878049 128878301 + 2 NA Intergenic L1M4b|LINE|L1 -86952 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 227-191 chr2 178432593 178432759 + 2 NA intron (NM_001139517, intron 6 of 6) intron (NM_001139517, intron 6 of 6) 17952 NM_001139518 8575 Hs.570274 NM_003690 ENSG00000180228 PRKRA DYT16|HSD14|PACT|RAX protein activator of interferon induced protein kinase EIF2AK2 protein-coding 196-203 chr5 36151990 36152145 + 2 NA promoter-TSS (NM_001243120) promoter-TSS (NM_001243120) 24 NM_001243120 6502 Hs.23348 NM_005983 ENSG00000145604 SKP2 FBL1|FBXL1|FLB1|p45 S-phase kinase associated protein 2 protein-coding 817-47 chr7 30301731 30302482 + 2 NA intron (NM_147128, intron 1 of 4) intron (NM_147128, intron 1 of 4) -12216 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 319-112 chr12 83642690 83642956 + 2 NA Intergenic L1MA4A|LINE|L1 955668 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 401-215 chr3 129914936 129915274 + 2 NA Intergenic L1MB7|LINE|L1 21234 NR_037893 100507032 Hs.529562 NR_037893 ENSG00000271270 TMCC1-AS1 - TMCC1 antisense RNA 1 (head to head) ncRNA 370-245 chr2 136923031 136923253 + 2 NA intron (NM_001316349, intron 2 of 27) L1MB2|LINE|L1 157597 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 547-250 chr8 128487997 128488382 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 76490 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 310-153 chr15 27702567 27702737 + 2 NA Intergenic Intergenic 396663 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 527-48 chr11 59811958 59812295 + 2 NA Intergenic MER4E|LTR|ERV1 -1348 NM_017840 54948 Hs.530734 NM_017840 ENSG00000166902 MRPL16 L16mt|MRP-L16|PNAS-111 mitochondrial ribosomal protein L16 protein-coding 353-279 chr20 18912486 18912724 + 2 NA Intergenic Intergenic -82402 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 417-131 chr2 65729035 65729291 + 2 NA Intergenic Intergenic -296564 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 411-64 chr11 135006616 135006997 + 2 NA Intergenic LTR50|LTR|ERVL 21454 NR_135050 100507548 Hs.639995 NR_135050 LOC100507548 - uncharacterized LOC100507548 ncRNA 278-187 chr19 22078627 22078819 + 2 NA intron (NM_033468, intron 3 of 3) L1MB2|LINE|L1 26239 NM_001316997 113835 Hs.283900 NM_033468 ENSG00000197134 ZNF257 BMZF-4|BMZF4 zinc finger protein 257 protein-coding 296-46 chr10 57225348 57225548 + 2 NA Intergenic Intergenic 79111 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 373-31 chr1 187322212 187322509 + 2 NA intron (NR_126347, intron 2 of 3) intron (NR_126347, intron 2 of 3) -121268 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 371-347 chr6 158484373 158484637 + 2 NA intron (NM_020245, intron 8 of 13) MLT1B|LTR|ERVL-MaLR -51931 NM_020823 57583 Hs.99145 NM_020823 ENSG00000146433 TMEM181 GPR178|KIAA1423 transmembrane protein 181 protein-coding 258-233 chr20 47919330 47919576 + 2 NA Intergenic Intergenic -63773 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 201-224 chr7 4387204 4387358 + 2 NA Intergenic HAL1|LINE|L1 -252444 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 332-364 chr4 20577603 20577892 + 2 NA intron (NM_001289135, intron 28 of 35) intron (NM_001289135, intron 28 of 35) 49472 NR_029631 407000 NR_029631 ENSG00000207732 MIR218-1 MIRN218-1|mir-218-1 microRNA 218-1 ncRNA 286-440 chr8 20660067 20660248 + 2 NA Intergenic L2a|LINE|L2 -45231 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 186-162 chr8 88121576 88121727 + 2 NA intron (NM_005941, intron 4 of 9) intron (NM_005941, intron 4 of 9) 205832 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 193-185 chr7 34424160 34424315 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -233981 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 304-502 chr8 50324971 50325123 + 2 NA intron (NR_135797, intron 2 of 20) L1MD|LINE|L1 160916 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 500-71 chr12 83693256 83693653 + 2 NA Intergenic L1MA3|LINE|L1 1006299 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 417-175 chr3 54380572 54380917 + 2 NA intron (NM_018398, intron 3 of 37) AluY|SINE|Alu 258192 NM_018398 55799 Hs.656687 NM_018398 ENSG00000157445 CACNA2D3 HSA272268 calcium voltage-gated channel auxiliary subunit alpha2delta 3 protein-coding 356-170 chr15 92652351 92652648 + 2 NA intron (NM_207446, intron 1 of 2) intron (NM_207446, intron 1 of 2) 3276 NM_207446 400451 Hs.27373 NM_207446 ENSG00000185442 FAM174B - family with sequence similarity 174 member B protein-coding 155-37 chr14 28021326 28021433 + 2 NA Intergenic Intergenic -348158 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 613-145 chr9 37369164 37369622 + 2 NA Intergenic L3|LINE|CR1 -53303 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 480-38 chr10 128403358 128403739 + 2 NA Intergenic Intergenic 117598 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 129-17 chr14 47221802 47221920 + 2 NA intron (NM_001113498, intron 2 of 16) L1MA7|LINE|L1 121385 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 210-215 chr5 6268034 6268235 + 2 NA Intergenic Intergenic 69158 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 492-116 chr19 12272866 12273263 + 2 NA exon (NM_001164276, exon 5 of 5) exon (NM_001164276, exon 5 of 5) 21548 NM_001353551 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 224-116 chr17 60313273 60313424 + 2 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) 78785 NM_032582 84669 Hs.132868 NM_032582 ENSG00000170832 USP32 NY-REN-60|USP10 ubiquitin specific peptidase 32 protein-coding 233-127 chr17 42176912 42177056 + 2 NA intron (NM_012285, intron 4 of 16) AluJr|SINE|Alu 4158 NM_012285 23415 Hs.304081 NM_012285 ENSG00000089558 KCNH4 BEC2|ELK1|Kv12.3 potassium voltage-gated channel subfamily H member 4 protein-coding 300-195 chr2 76225941 76226187 + 2 NA Intergenic HAL1|LINE|L1 -515149 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 262-79 chr11 57053554 57053726 + 2 NA Intergenic L2c|LINE|L2 16106 NR_036445 219525 Hs.554519 NR_036445 ENSG00000283307 OR5AK4P PJCG3 olfactory receptor family 5 subfamily AK member 4 pseudogene pseudo 333-547 chr7 86062014 86062198 + 2 NA Intergenic L2a|LINE|L2 -581803 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 520-4 chr1 50008744 50009125 + 2 NA intron (NM_001323575, intron 1 of 12) L1MA1|LINE|L1 15020 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 175-174 chr8 124278683 124278823 + 2 NA Intergenic MIRb|SINE|MIR -31355 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 343-556 chr8 123866169 123866500 + 2 NA intron (NM_001039112, intron 1 of 40) L1MA7|LINE|L1 14347 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 386-190 chr2 170556062 170556386 + 2 NA intron (NM_001083615, intron 31 of 33) L1MC2|LINE|L1 158343 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 275-378 chr9 22978442 22978644 + 2 NA Intergenic L1MC4a|LINE|L1 332343 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 283-478 chrX 76854255 76854514 + 2 NA intron (NR_110403, intron 1 of 3) MIR|SINE|MIR 64976 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 229-306 chr5 77940464 77940639 + 2 NA intron (NR_105012, intron 1 of 1) L1MEd|LINE|L1 -17696 NR_105013 101929154 Hs.252895 NR_105012 LOC101929154 - uncharacterized LOC101929154 ncRNA 221-42 chr10 96541802 96541999 + 2 NA intron (NM_020123, intron 9 of 14) intron (NM_020123, intron 9 of 14) -27974 NM_012465 7093 Hs.154296 NM_012465 ENSG00000095587 TLL2 - tolloid like 2 protein-coding 440-255 chr8 134194484 134194890 + 2 NA Intergenic Intergenic 308191 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 367-119 chr14 44764376 44764634 + 2 NA intron (NR_146457, intron 4 of 4) intron (NR_146457, intron 4 of 4) 34621 NR_146457 101927351 Hs.196842 NR_146457 LINC02302 - long intergenic non-protein coding RNA 2302 ncRNA 134-53 chr22 34902259 34902339 + 2 NA intron (NR_138042, intron 2 of 4) intron (NR_138042, intron 2 of 4) 95617 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 304-312 chr21 28459854 28460118 + 2 NA Intergenic MIR|SINE|MIR -79332 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 169-110 chr6 118863181 118863299 + 2 NA intron (NM_017696, intron 6 of 11) L1MCa|LINE|L1 -30912 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 218-348 chr9 79162193 79162345 + 2 NA Intergenic Intergenic -16603 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 261-13 chr1 81695027 81695258 + 2 NA intron (NM_001366008, intron 3 of 26) intron (NM_001366008, intron 3 of 26) -4628 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 369-413 chr8 99711663 99711984 + 2 NA intron (NM_017890, intron 36 of 61) intron (NM_017890, intron 36 of 61) -174962 NR_030596 100126309 NR_030596 ENSG00000216069 MIR875 MIRN875|hsa-mir-875 microRNA 875 ncRNA 398-333 chr7 108739313 108739585 + 2 NA Intergenic Intergenic 145138 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 396-163 chr2 61423804 61424197 + 2 NA intron (NM_014709, intron 1 of 79) L1MB2|LINE|L1 -6623 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 287-151 chr15 100485018 100485186 + 2 NA intron (NM_001290341, intron 6 of 13) MIR3|SINE|MIR 59184 NM_001290342 204219 Hs.662371 NM_178842 ENSG00000154227 CERS3 ARCI9|LASS3 ceramide synthase 3 protein-coding 337-395 chr4 55533429 55533686 + 2 NA intron (NM_004898, intron 1 of 22) intron (NM_004898, intron 1 of 22) 12375 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 257-67 chr11 85873446 85873691 + 2 NA intron (NM_001286159, intron 3 of 10) intron (NM_001286159, intron 3 of 10) 18467 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 369-174 chr19 28669424 28669696 + 2 NA intron (NR_110759, intron 5 of 9) intron (NR_110759, intron 5 of 9) 58134 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 648-145 chr8 109481726 109482337 + 2 NA intron (NM_177531, intron 56 of 77) intron (NM_177531, intron 56 of 77) -57669 NM_198120 9166 Hs.409368 NM_004215 ENSG00000147654 EBAG9 EB9|PDAF estrogen receptor binding site associated antigen 9 protein-coding 607-32 chr12 61057727 61058159 + 2 NA Intergenic L1PREC2|LINE|L1 1134896 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 241-58 chr11 24431110 24431271 + 2 NA Intergenic L1M5|LINE|L1 -65863 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 218-331 chr8 102571795 102571956 + 2 NA Intergenic L1MC4|LINE|L1 20286 NM_024410 4956 Hs.159274 NM_024410 ENSG00000155087 ODF1 CT133|HSPB10|ODF|ODF2|ODF27|ODFP|ODFPG|ODFPGA|ODFPGB|RT7|SODF outer dense fiber of sperm tails 1 protein-coding 172-38 chr15 33188565 33188687 + 2 NA intron (NM_001277313, intron 2 of 20) intron (NM_001277313, intron 2 of 20) 6088 NM_001277314 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 325-474 chr6 40686908 40687198 + 2 NA Intergenic Intergenic -99689 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 458-258 chr8 88307890 88308144 + 2 NA intron (NM_005941, intron 1 of 9) intron (NM_005941, intron 1 of 9) 19466 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 601-77 chr2 80217234 80217609 + 2 NA intron (NM_001282598, intron 7 of 17) MIRc|SINE|MIR 87331 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 244-60 chr11 125306303 125306513 + 2 NA intron (NM_022062, intron 2 of 12) intron (NM_022062, intron 2 of 12) 141657 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 343-8 chr1 47816358 47816541 + 2 NA intron (NM_001194986, intron 2 of 6) L2c|LINE|L2 180936 NM_001194986 388630 Hs.61504 NM_001194986 ENSG00000269113 TRABD2B TIKI2 TraB domain containing 2B protein-coding 730-34 chr2 150656414 150657056 + 2 NA Intergenic Intergenic 27838 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 209-193 chr3 26569428 26569613 + 2 NA Intergenic L1ME1|LINE|L1 -53286 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 371-63 chr11 13454034 13454362 + 2 NA intron (NM_032320, intron 1 of 8) intron (NM_032320, intron 1 of 8) 9099 NM_032320 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 217-395 chrX 41154478 41154691 + 2 NA intron (NM_001039591, intron 14 of 44) intron (NM_001039591, intron 14 of 44) 69139 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 758-42 chr2 100730273 100730674 + 2 NA Intergenic Intergenic -89666 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 283-114 chr13 22497525 22497677 + 2 NA Intergenic Intergenic 287316 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 382-90 chr13 63403257 63403542 + 2 NA Intergenic Intergenic -75305 NR_126409 104355293 Hs.121439 NR_126409 ENSG00000227564 LINC00376 - long intergenic non-protein coding RNA 376 ncRNA 268-127 chr14 83386935 83387154 + 2 NA Intergenic L1MA9|LINE|L1 744412 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 496-20 chr1 158910777 158911162 + 2 NA Intergenic L1M1|LINE|L1 -20583 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 322-315 chr22 46552907 46553111 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -15389 NM_014246 9620 Hs.252387 NM_014246 ENSG00000075275 CELSR1 ADGRC1|CDHF9|FMI2|HFMI2|ME2 cadherin EGF LAG seven-pass G-type receptor 1 protein-coding 366-197 chr2 63838706 63838939 + 2 NA Intergenic Intergenic -2142 NM_001001521 7360 Hs.516217 NM_006759 ENSG00000169764 UGP2 UDPG|UDPGP|UDPGP2|UGP1|UGPP1|UGPP2|pHC379 UDP-glucose pyrophosphorylase 2 protein-coding 321-307 chr2 167829954 167830204 + 2 NA intron (NM_020981, intron 1 of 1) intron (NM_020981, intron 1 of 1) 11407 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 341-539 chr8 126032318 126032635 + 2 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -81279 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 593-123 chr6 121022299 121022632 + 2 NA Intergenic Intergenic 312015 NR_104452 221322 Hs.121396 NM_152730 ENSG00000146350 TBC1D32 BROMI|C6orf170|C6orf171 TBC1 domain family member 32 protein-coding 354-504 chrX 5336774 5336975 + 2 NA Intergenic Intergenic -703302 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 318-65 chr10 58541694 58541906 + 2 NA intron (NM_001080512, intron 1 of 20) L1MB2|LINE|L1 28928 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 305-156 chr14 78192725 78192961 + 2 NA intron (NR_073547, intron 1 of 20) intron (NR_073547, intron 1 of 20) 22470 NR_158974 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 299-381 chr5 125011165 125011392 + 2 NA Intergenic Intergenic -25553 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 300-177 chr19 44482122 44482303 + 2 NA intron (NM_001278508, intron 2 of 3) AluJb|SINE|Alu 18310 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 436-326 chr9 10166029 10166395 + 2 NA intron (NM_002839, intron 3 of 45) intron (NM_002839, intron 3 of 45) 366820 NR_135135 105375972 Hs.738242 NR_135135 ENSG00000230920 LOC105375972 - uncharacterized LOC105375972 ncRNA 383-264 chr3 174849783 174850137 + 2 NA Intergenic L1M1|LINE|L1 -9374 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 461-49 chr11 83382443 83382782 + 2 NA Intergenic MIRb|SINE|MIR -96205 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 288-37 chr1 246488051 246488251 + 2 NA intron (NM_001167740, intron 1 of 11) intron (NM_001167740, intron 1 of 11) 19128 NM_001167740 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 654-11 chr1 240050377 240050974 + 2 NA Intergenic Intergenic -41208 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 329-565 chr8 46759722 46759915 + 2 NA Intergenic LTR72B|LTR|ERV1 -81068 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 405-167 chr2 194478467 194478726 + 2 NA Intergenic Intergenic 134327 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 580-186 chr7 71787709 71788133 + 2 NA intron (NM_001363460, intron 5 of 5) intron (NM_001363460, intron 5 of 5) -480151 NR_037477 100500836 NR_037477 ENSG00000265878 MIR3914-1 - microRNA 3914-1 ncRNA 167-77 chr3 59586463 59586628 + 2 NA Intergenic L1M8|LINE|L1 71952 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 336-358 chr22 48063483 48063652 + 2 NA Intergenic L1PREC2|LINE|L1 -210797 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 697-42 chr2 30753892 30754444 + 2 NA intron (NM_144575, intron 9 of 22) intron (NM_144575, intron 9 of 22) 53278 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 266-29 chr1 244824654 244824849 + 2 NA Intergenic L1MC4|LINE|L1 -10555 NM_001312871 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 339-434 chr4 181772258 181772445 + 2 NA Intergenic AluSg|SINE|Alu 57622 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 354-489 chr9 9174506 9174731 + 2 NA intron (NM_002839, intron 10 of 45) intron (NM_002839, intron 10 of 45) 316600 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 448-49 chr11 30938908 30939309 + 2 NA intron (NM_001367979, intron 21 of 38) HERVP71A-int|LTR|ERV1 53578 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 285-422 chr8 111664411 111664663 + 2 NA Intergenic Intergenic 287898 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 230-136 chr16 8496714 8496875 + 2 NA Intergenic L1MB8|LINE|L1 93044 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 325-384 chr4 32470800 32470984 + 2 NA Intergenic Intergenic 119854 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 304-206 chr18 5968160 5968312 + 2 NA intron (NM_001365769, intron 15 of 16) intron (NM_001365769, intron 15 of 16) -72282 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 336-506 chr7 16387641 16387900 + 2 NA intron (NM_001101426, intron 2 of 9) L1M4b|LINE|L1 33768 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 315-209 chr19 34779978 34780249 + 2 NA Intergenic Intergenic -6898 NM_001007248 148103 Hs.590961 NM_001007247 ENSG00000153896 ZNF599 - zinc finger protein 599 protein-coding 361-100 chr12 34418421 34418750 + 2 NA Intergenic ALR/Alpha|Satellite|centr 396089 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 328-28 chr1 188923365 188923596 + 2 NA Intergenic L1MA4|LINE|L1 1479852 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 478-35 chr10 123221535 123221978 + 2 NA Intergenic L1PB4|LINE|L1 67354 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 316-108 chr11 94326015 94326232 + 2 NA Intergenic MER89|LTR|ERV1 20486 NM_001199206 390243 Hs.553758 NM_001080486 ENSG00000183560 IZUMO1R FOLR4|Folbp3|JUNO IZUMO1 receptor, JUNO protein-coding 295-484 chr8 131087644 131087886 + 2 NA Intergenic MIR|SINE|MIR -46856 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 525-40 chr11 40605312 40605707 + 2 NA intron (NM_020929, intron 2 of 4) L1MB1|LINE|L1 -312379 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 254-298 chr5 16145774 16145942 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 33933 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 503-115 chr16 62910965 62911323 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -874706 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 370-383 chr5 178895125 178895366 + 2 NA promoter-TSS (NM_030613) promoter-TSS (NM_030613) -668 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 355-105 chr11 102571533 102571846 + 2 NA Intergenic L2a|LINE|L2 -40942 NM_002423 4316 Hs.2256 NM_002423 ENSG00000137673 MMP7 MMP-7|MPSL1|PUMP-1 matrix metallopeptidase 7 protein-coding 429-43 chr10 102184548 102184907 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 32338 NM_004741 9221 Hs.523238 NM_004741 ENSG00000166197 NOLC1 NOPP130|NOPP140|NS5ATP13|P130 nucleolar and coiled-body phosphoprotein 1 protein-coding 325-508 chr7 72092875 72093195 + 2 NA intron (NM_001363460, intron 3 of 5) MLT1I|LTR|ERVL-MaLR 244356 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 236-321 chr7 37315239 37315415 + 2 NA intron (NM_001206480, intron 3 of 21) intron (NM_001206480, intron 3 of 21) 38341 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 258-10 chr1 98519906 98520123 + 2 NA Intergenic L1MA3|LINE|L1 -141707 NR_033716 51375 Hs.197015 NM_015976 ENSG00000162627 SNX7 - sorting nexin 7 protein-coding 576-103 chr22 49597911 49598316 + 2 NA intron (NR_110523, intron 1 of 4) intron (NR_110523, intron 1 of 4) -54647 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 215-102 chr16 59319115 59319294 + 2 NA Intergenic Intergenic 435987 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 328-239 chr19 52114410 52114577 + 2 NA non-coding (NR_135823, exon 5 of 5) non-coding (NR_135823, exon 5 of 5) -18728 NM_001369830 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 355-378 chr4 109723819 109724132 + 2 NA intron (NM_030821, intron 1 of 3) DNA1_Mam|DNA|TcMar 6095 NM_030821 81579 Hs.389452 NM_030821 ENSG00000123739 PLA2G12A GXII|PLA2G12|ROSSY phospholipase A2 group XIIA protein-coding 204-143 chr2 75481195 75481388 + 2 NA Intergenic Intergenic -42777 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 532-265 chr8 59402504 59402922 + 2 NA Intergenic L1MB3|LINE|L1 283503 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 305-526 chr8 48721238 48721412 + 2 NA intron (NR_157026, intron 5 of 5) L1MA9|LINE|L1 13943 NM_024593 79645 Hs.23245 NM_024593 ENSG00000034239 EFCAB1 - EF-hand calcium binding domain 1 protein-coding 808-9 chr11 83366721 83367304 + 2 NA Intergenic Intergenic -80605 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 509-132 chr21 22336326 22336729 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 237910 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 279-369 chr6 100928860 100929100 + 2 NA Intergenic LTR85a|LTR|Gypsy? -47608 NM_001284271 10973 Hs.486031 NM_006828 ENSG00000112249 ASCC3 ASC1p200|HELIC1|RNAH activating signal cointegrator 1 complex subunit 3 protein-coding 402-155 chr2 107030372 107030655 + 2 NA Intergenic L1M5|LINE|L1 -143404 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 509-177 chr4 128970022 128970470 + 2 NA intron (NM_144643, intron 10 of 20) intron (NM_144643, intron 10 of 20) 123293 NM_001300897 132320 Hs.654690 NM_144643 ENSG00000151466 SCLT1 CAP-1A|CAP1A sodium channel and clathrin linker 1 protein-coding 314-477 chr5 117324161 117324322 + 2 NA Intergenic Intergenic -91271 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 365-248 chr22 35176797 35177056 + 2 NA intron (NR_126356, intron 2 of 5) intron (NR_126356, intron 2 of 5) 54130 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 253-322 chr5 28080612 28080798 + 2 NA Intergenic L1MB8|LINE|L1 206960 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 234-345 chr6 118632965 118633147 + 2 NA intron (NM_001178035, intron 2 of 13) intron (NM_001178035, intron 2 of 13) 18535 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 625-109 chr8 706385 706807 + 2 NA intron (NR_156467, intron 2 of 5) AluSp|SINE|Alu 24628 NM_207332 157697 Hs.655310 NM_207332 ENSG00000104714 ERICH1 HSPC319 glutamate rich 1 protein-coding 252-382 chr6 148791667 148791815 + 2 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 44711 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 507-59 chr11 94085733 94086132 + 2 NA intron (NM_001098672, intron 10 of 19) intron (NM_001098672, intron 10 of 19) -42909 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 263-419 chr8 90387953 90388109 + 2 NA TTS (NR_051989) TTS (NR_051989) 166543 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 371-77 chr12 14382970 14383219 + 2 NA intron (NM_001286515, intron 1 of 12) intron (NM_001286515, intron 1 of 12) -2187 NM_181352 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 296-106 chr12 47598836 47599071 + 2 NA Intergenic L1MC4|LINE|L1 107077 NM_024604 79657 Hs.437855 NM_024604 ENSG00000005175 RPAP3 Tah1|hSpagh RNA polymerase II associated protein 3 protein-coding 152-75 chr4 164194554 164194657 + 2 NA intron (NM_001166373, intron 1 of 7) intron (NM_001166373, intron 1 of 7) 3106 NM_012403 23520 Hs.661161 NM_012403 ANP32C PP32R1 acidic nuclear phosphoprotein 32 family member C protein-coding 404-235 chr4 79616498 79616814 + 2 NA Intergenic Intergenic 124063 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 259-161 chr17 61032988 61033195 + 2 NA intron (NM_001330413, intron 17 of 25) intron (NM_001330413, intron 17 of 25) 334613 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 217-184 chr2 125109302 125109485 + 2 NA Intergenic Intergenic 1008592 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 208-212 chr5 84704324 84704488 + 2 NA Intergenic L1M1|LINE|L1 -319526 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 246-253 chr3 60894947 60895159 + 2 NA intron (NR_148922, intron 3 of 3) L1MC4|LINE|L1 -277183 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 183-78 chr2 81386858 81386972 + 2 NA Intergenic L1MEc|LINE|L1 80031 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 230-24 chr1 186262851 186263002 + 2 NA Intergenic L1MEg|LINE|L1 -33347 NM_001303232 10216 Hs.647723 NM_005807 ENSG00000116690 PRG4 CACP|HAPO|JCAP|MSF|SZP proteoglycan 4 protein-coding 156-4 chr1 118936784 118936909 + 2 NA intron (NM_152380, intron 1 of 7) intron (NM_152380, intron 1 of 7) 51497 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 461-178 chr3 142730132 142730518 + 2 NA intron (NM_001251845, intron 1 of 12) Charlie9|DNA|hAT-Charlie 5901 NM_003304 7220 Hs.250687 NM_003304 ENSG00000144935 TRPC1 HTRP-1|TRP1 transient receptor potential cation channel subfamily C member 1 protein-coding 748-83 chr8 20778836 20779409 + 2 NA Intergenic L1ME2|LINE|L1 -164196 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 433-59 chr12 42616642 42617058 + 2 NA intron (NR_110042, intron 5 of 5) LTR49-int|LTR|ERV1 -27104 NM_153026 144165 Hs.524348 NM_153026 ENSG00000139174 PRICKLE1 EPM1B|RILP prickle planar cell polarity protein 1 protein-coding 249-400 chr8 9987554 9987698 + 2 NA Intergenic HAL1ME|LINE|L1 -66666 NM_012331 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 543-51 chr11 50506766 50507209 + 2 NA Intergenic ALR/Alpha|Satellite|centr 97840 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 302-417 chr7 81404601 81404896 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 157071 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 423-253 chr6 155351160 155351458 + 2 NA Intergenic Intergenic -36825 NM_001350502 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 408-357 chr9 103602342 103602596 + 2 NA Intergenic L1PA15|LINE|L1 -277436 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 169-19 chr11 62501601 62501736 + 2 NA intron (NM_024060, intron 4 of 5) intron (NM_024060, intron 4 of 5) 43996 NM_001346446 79026 Hs.502756 NM_001620 ENSG00000124942 AHNAK AHNAKRS|PM227 AHNAK nucleoprotein protein-coding 471-275 chr8 135158316 135158746 + 2 NA Intergenic Intergenic -75600 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 600-74 chr2 205506644 205507069 + 2 NA intron (NM_205863, intron 20 of 21) MLT1K|LTR|ERVL-MaLR -175644 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 581-98 chr3 68256040 68256374 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) -244430 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 368-231 chr2 65703021 65703354 + 2 NA Intergenic Intergenic -270588 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 350-19 chr1 165052592 165052788 + 2 NA Intergenic Intergenic -278049 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 288-426 chr7 143168791 143168964 + 2 NA intron (NM_001130026, intron 8 of 10) L1M3|LINE|L1 -14542 NM_176881 259285 Hs.553660 NM_176881 ENSG00000236398 TAS2R39 T2R39|T2R57 taste 2 receptor member 39 protein-coding 588-116 chr4 154229538 154229908 + 2 NA Intergenic Intergenic 262076 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 411-286 chr8 50581106 50581324 + 2 NA intron (NR_135797, intron 14 of 20) intron (NR_135797, intron 14 of 20) 417084 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 342-473 chr7 440656 440962 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 61384 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 630-98 chr4 98015873 98016468 + 2 NA intron (NM_174952, intron 5 of 10) L1PA7|LINE|L1 127306 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 408-56 chr11 22861864 22862114 + 2 NA Intergenic Intergenic -1515 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 592-49 chr14 70895125 70895500 + 2 NA Intergenic Intergenic -12147 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 640-14 chr10 64260604 64261010 + 2 NA Intergenic Intergenic -564721 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 335-554 chr8 139832994 139833294 + 2 NA intron (NM_001160372, intron 21 of 22) MLT1E2|LTR|ERVL-MaLR -130021 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 368-406 chr6 139599387 139599619 + 2 NA Intergenic Intergenic -124907 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 416-126 chr15 33603909 33604268 + 2 NA intron (NM_001243996, intron 18 of 102) intron (NM_001243996, intron 18 of 102) 293121 NM_001243996 6263 Hs.709373 NM_001036 ENSG00000198838 RYR3 RYR-3 ryanodine receptor 3 protein-coding 174-99 chr3 189210205 189210325 + 2 NA intron (NM_198485, intron 2 of 5) MIRb|SINE|MIR 30329 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 369-227 chr2 199198280 199198538 + 2 NA Intergenic L2|LINE|L2 259530 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 554-75 chr14 69017951 69018485 + 2 NA Intergenic Intergenic 38536 NR_073422 161159 Hs.603341 NR_073422 ENSG00000259062 ACTN1-AS1 C14orf84 ACTN1 antisense RNA 1 ncRNA 358-25 chr1 215688412 215688733 + 2 NA intron (NM_206933, intron 61 of 71) MLT1B|LTR|ERVL-MaLR 121268 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 335-209 chr18 20921415 20921608 + 2 NA Intergenic ALR/Alpha|Satellite|centr 190302 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 551-29 chr11 36989211 36989721 + 2 NA Intergenic MIR|SINE|MIR -391187 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 362-265 chr3 25227646 25227923 + 2 NA intron (NM_001290216, intron 4 of 10) HAL1b|LINE|L1 -113018 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 422-223 chr4 151549837 151550194 + 2 NA intron (NM_001109977, intron 3 of 13) intron (NM_001109977, intron 3 of 13) 140839 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 261-141 chr17 35256528 35256739 + 2 NA intron (NM_144975, intron 1 of 4) MIRb|SINE|MIR 13561 NM_144975 162394 Hs.585792 NM_144975 ENSG00000166750 SLFN5 - schlafen family member 5 protein-coding 183-142 chr7 20993818 20993967 + 2 NA intron (NR_126381, intron 2 of 5) intron (NR_126381, intron 2 of 5) 158461 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 517-72 chr13 110901257 110901568 + 2 NA intron (NR_104586, intron 3 of 4) intron (NR_104586, intron 3 of 4) 13657 NR_104586 55608 Hs.525163 NM_017664 ENSG00000088448 ANKRD10 - ankyrin repeat domain 10 protein-coding 301-424 chr7 62850760 62850945 + 2 NA Intergenic ALR/Alpha|Satellite|centr 453204 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 464-230 chr7 8222036 8222371 + 2 NA intron (NM_001350838, intron 4 of 11) L1M5|LINE|L1 39849 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 410-300 chr8 50458829 50459092 + 2 NA intron (NR_135797, intron 8 of 20) L1M4|LINE|L1 294829 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 205-219 chr5 42496015 42496182 + 2 NA intron (NM_001242401, intron 2 of 10) intron (NM_001242401, intron 2 of 10) -51945 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 393-389 chr9 119618967 119619186 + 2 NA Intergenic Intergenic -249641 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 309-379 chr4 17351217 17351403 + 2 NA Intergenic Intergenic -30428 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 364-260 chr22 27250381 27250673 + 2 NA Intergenic L2a|LINE|L2 -25848 NM_001350812 105372978 NM_001350812 LINC01638 - long intergenic non-protein coding RNA 1638 protein-coding 249-230 chr2 220054437 220054641 + 2 NA Intergenic Intergenic -147974 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 316-75 chr10 72433731 72433955 + 2 NA intron (NM_001195519, intron 3 of 6) intron (NM_001195519, intron 3 of 6) -78924 NM_001365080 54788 Hs.500013 NM_017626 ENSG00000148719 DNAJB12 DJ10 DnaJ heat shock protein family (Hsp40) member B12 protein-coding 836-35 chr21 30616843 30617367 + 2 NA TTS (NM_181615) TTS (NM_181615) 680 NM_181615 337975 Hs.553697 NM_181615 ENSG00000244624 KRTAP20-1 KAP20.1 keratin associated protein 20-1 protein-coding 338-225 chr18 11968687 11968984 + 2 NA Intergenic Intergenic -12672 NM_014214 3613 Hs.743311 NM_014214 ENSG00000141401 IMPA2 - inositol monophosphatase 2 protein-coding 293-41 chr10 76574760 76575001 + 2 NA Intergenic L1M6|LINE|L1 -313164 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 347-412 chr5 135688763 135689097 + 2 NA intron (NM_001349335, intron 3 of 10) MIR|SINE|MIR -34995 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 375-181 chr18 31383502 31383735 + 2 NA intron (NM_001134453, intron 1 of 14) Charlie2a|DNA|hAT-Charlie 6841 NM_001134453 147409 Hs.407618 NM_177986 ENSG00000175065 DSG4 CDGF13|CDHF13|HYPT6|LAH desmoglein 4 protein-coding 534-165 chr3 127932562 127932949 + 2 NA intron (NM_001370224, intron 4 of 6) MIRb|SINE|MIR 17523 NM_207335 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 237-157 chr19 50045021 50045198 + 2 NA exon (NM_001006656, exon 5 of 5) exon (NM_001006656, exon 5 of 5) -5480 NR_138096 400710 Hs.628968 NR_027257 ENSG00000204666 LOC400710 - uncharacterized LOC400710 ncRNA 841-19 chr2 159470465 159470929 + 2 NA intron (NM_001329858, intron 3 of 36) L2c|LINE|L2 -144597 NR_110588 643072 Hs.632541 NR_110587 LOC643072 - uncharacterized LOC643072 ncRNA 125-21 chr17 28020003 28020084 + 2 NA Intergenic Intergenic -22634 NM_016231 51701 Hs.208759 NM_016231 ENSG00000087095 NLK - nemo like kinase protein-coding 250-176 chr18 13181333 13181507 + 2 NA Intergenic L1ME1|LINE|L1 -37340 NM_181482 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 294-301 chr3 95161488 95161750 + 2 NA Intergenic Intergenic 223356 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 150-47 chr2 2140270 2140398 + 2 NA intron (NM_015025, intron 3 of 24) intron (NM_015025, intron 3 of 24) -178898 NR_024468 730811 Hs.629472 NR_024468 ENSG00000225619 MYT1L-AS1 - MYT1L antisense RNA 1 ncRNA 205 chr1 13942748 13942901 + 2 NA Intergenic L1MEg|LINE|L1 193409 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 192-229 chrX 82634631 82634776 + 2 NA Intergenic UCON7|DNA?|DNA? -873587 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 444-223 chr6 119921184 119921462 + 2 NA Intergenic L1M1|LINE|L1 -93856 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 775-60 chr3 100393381 100393898 + 2 NA intron (NM_014820, intron 1 of 11) intron (NM_014820, intron 1 of 11) 7450 NM_014820 9868 Hs.227253 NM_014820 ENSG00000154174 TOMM70 TOMM70A|Tom70 translocase of outer mitochondrial membrane 70 protein-coding 379-315 chr7 42071434 42071676 + 2 NA intron (NM_000168, intron 4 of 14) intron (NM_000168, intron 4 of 14) 165654 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 428-41 chr12 4182599 4182969 + 2 NA Intergenic L2a|LINE|L2 -90978 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 169-16 chr11 26654039 26654160 + 2 NA intron (NM_031418, intron 24 of 26) L1MEg2|LINE|L1 67961 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 264-77 chr11 79996828 79997046 + 2 NA Intergenic HAL1|LINE|L1 -555907 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 576-6 chr1 164883424 164883745 + 2 NA intron (NM_001353131, intron 7 of 7) intron (NM_001353131, intron 7 of 7) -108943 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 487-247 chr6 82595915 82596285 + 2 NA Intergenic L1M5|LINE|L1 231856 NM_001166392 7162 Hs.71947 NM_006670 ENSG00000146242 TPBG 5T4|5T4AG|M6P1|WAIF1 trophoblast glycoprotein protein-coding 322-135 chr12 116364019 116364314 + 2 NA Intergenic AluSz|SINE|Alu 64152 NR_039683 100616309 NR_039683 ENSG00000264037 MIR4472-2 - microRNA 4472-2 ncRNA 296-39 chr10 32933630 32933873 + 2 NA intron (NM_002211, intron 2 of 15) L1ME4a|LINE|L1 1807 NM_033668 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 522-62 chr12 46028524 46028886 + 2 NA Intergenic L1MCa|LINE|L1 -38131 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 370-430 chr8 20981326 20981547 + 2 NA intron (NR_033894, intron 1 of 4) MER21C|LTR|ERVL 7450 NR_033894 286114 Hs.651884 NR_033894 ENSG00000253199 LINC02153 - long intergenic non-protein coding RNA 2153 ncRNA 445-49 chr12 17980281 17980637 + 2 NA Intergenic Intergenic 109734 NM_024730 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 637-125 chrX 87375726 87376329 + 2 NA Intergenic Intergenic -141775 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 624-89 chr4 66832254 66832711 + 2 NA Intergenic Intergenic 555658 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 856-6 chr1 241690534 241691236 + 2 NA intron (NM_001367482, intron 8 of 27) L1MC1|LINE|L1 38604 NM_001367482 128025 Hs.97527 NM_144625 ENSG00000162843 WDR64 - WD repeat domain 64 protein-coding 407-259 chr5 133843913 133844295 + 2 NA Intergenic Intergenic -69573 NR_131252 105664404 Hs.582536 NR_131252 ENSG00000249073 WSPAR LncTCF7|TCONS_00009511 WNT signaling pathway activating non-coding RNA ncRNA 257-318 chr5 28527461 28527706 + 2 NA Intergenic Intergenic -239918 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 307-436 chr6 155575676 155575920 + 2 NA Intergenic Intergenic 60954 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 385-374 chr8 20661774 20662104 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -47013 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 561-69 chr14 68624118 68624519 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 4469 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 325-550 chr8 121392616 121392805 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -246636 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 486-47 chr11 41020195 41020542 + 2 NA intron (NM_001258419, intron 1 of 6) MLT1C|LTR|ERVL-MaLR 439268 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 445-262 chr8 10995394 10995793 + 2 NA intron (NM_173683, intron 1 of 2) AluJb|SINE|Alu 39709 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 213-304 chr9 104709017 104709162 + 2 NA Intergenic L1MEb|LINE|L1 14667 NM_001004484 286365 Hs.553683 NM_001004484 ENSG00000179055 OR13D1 OR9-15 olfactory receptor family 13 subfamily D member 1 protein-coding 192-127 chr21 32021285 32021428 + 2 NA Intergenic MER81|DNA|hAT-Blackjack 64939 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 201-135 chr20 45171682 45171842 + 2 NA Intergenic L1ME3F|LINE|L1 -3140 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 369-106 chr14 43056845 43057079 + 2 NA Intergenic L1PA16|LINE|L1 1450106 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 239-48 chr10 111095738 111095927 + 2 NA Intergenic Intergenic -18459 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 220-46 chr10 56605666 56605827 + 2 NA Intergenic Intergenic -244473 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 252-263 chr3 65922931 65923147 + 2 NA intron (NR_046575, intron 2 of 2) intron (NR_046575, intron 2 of 2) 29223 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 547-46 chr12 16340722 16341049 + 2 NA Intergenic FLAM_C|SINE|Alu -6257 NM_145792 4257 Hs.389700 NM_020300 ENSG00000008394 MGST1 GST12|MGST|MGST-I microsomal glutathione S-transferase 1 protein-coding 202-264 chr8 135417885 135418027 + 2 NA Intergenic Intergenic -39500 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 315-127 chr14 45862890 45863101 + 2 NA Intergenic MER57A1|LTR|ERV1 -147393 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 352-73 chr11 20869274 20869595 + 2 NA intron (NM_201551, intron 4 of 18) intron (NM_201551, intron 4 of 18) 199848 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 313-389 chr4 80845409 80845660 + 2 NA intron (NM_001206997, intron 4 of 6) L2b|LINE|L2 -185174 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 292-124 chr13 72118906 72119181 + 2 NA Intergenic MIRb|SINE|MIR -251839 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 234-249 chr3 99567556 99567703 + 2 NA Intergenic L1PB4|LINE|L1 -70965 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 345-111 chr12 18564562 18564846 + 2 NA intron (NM_001288774, intron 28 of 32) intron (NM_001288774, intron 28 of 32) 172805 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 372-431 chr6 59557411 59557644 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1596081 NR_125728 106660612 Hs.561539 NR_125727 ENSG00000215190 LINC00680 - long intergenic non-protein coding RNA 680 ncRNA 257-298 chr4 57447541 57447723 + 2 NA intron (NR_125907, intron 4 of 5) MamTip2|DNA|hAT-Tip100 21760 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 284-36 chr10 56162603 56162835 + 2 NA Intergenic Intergenic 198540 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 481-93 chr14 87185934 87186261 + 2 NA Intergenic Intergenic 280319 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 798-36 chr3 8029306 8029984 + 2 NA Intergenic Intergenic -13338 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 611-104 chr3 193424254 193424752 + 2 NA intron (NM_032279, intron 25 of 29) L1MA6|LINE|L1 -45750 NM_198505 344905 Hs.658032 NM_198505 ENSG00000187527 ATP13A5 - ATPase 13A5 protein-coding 537-55 chr12 79560219 79560644 + 2 NA Intergenic Intergenic 130149 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 261-29 chr1 237628589 237628780 + 2 NA intron (NM_001035, intron 41 of 104) intron (NM_001035, intron 41 of 104) 157565 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 276-116 chr12 85540648 85540872 + 2 NA Intergenic Intergenic 260540 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 159-61 chr3 186308431 186308532 + 2 NA intron (NM_001346, intron 2 of 24) intron (NM_001346, intron 2 of 24) 53753 NM_001080745 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 490-170 chr21 20021450 20021764 + 2 NA Intergenic L1PA7|LINE|L1 -121852 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 351-117 chr14 38119476 38119700 + 2 NA Intergenic Intergenic -88316 NM_001049 6751 Hs.248160 NM_001049 ENSG00000139874 SSTR1 SRIF-2|SS-1-R|SS1-R|SS1R somatostatin receptor 1 protein-coding 338-220 chr17 79323384 79323575 + 2 NA intron (NM_001082575, intron 2 of 14) intron (NM_001082575, intron 2 of 14) 192669 NM_001082575 146713 Hs.135229 NM_001025448 ENSG00000167281 RBFOX3 FOX-3|FOX3|HRNBP3|NEUN RNA binding fox-1 homolog 3 protein-coding 455-300 chr9 80638260 80638642 + 2 NA Intergenic Intergenic 663428 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 557-135 chr3 59782005 59782402 + 2 NA intron (NM_001354590, intron 7 of 8) AluSx|SINE|Alu -123706 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 383-351 chr7 32079158 32079463 + 2 NA intron (NM_001322059, intron 3 of 17) L2a|LINE|L2 -7874 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 380-232 chr22 33228995 33229342 + 2 NA Intergenic L1MEd|LINE|L1 120639 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 377-138 chr15 77139841 77140173 + 2 NA intron (NM_024776, intron 6 of 7) L2a|LINE|L2 -68898 NM_001168412 10099 Hs.744863 NM_005724 ENSG00000140391 TSPAN3 TM4-A|TM4SF8|TSPAN-3 tetraspanin 3 protein-coding 353-256 chr2 125416794 125417026 + 2 NA Intergenic AluSz|SINE|Alu 701075 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 202-281 chrX 82599926 82600114 + 2 NA Intergenic L1PA17|LINE|L1 -908270 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 302-323 chr4 60759570 60759809 + 2 NA Intergenic LTR19B|LTR|ERV1 -162930 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 354-164 chr16 62680183 62680369 + 2 NA Intergenic Intergenic -643838 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 303-5 chr1 79629507 79629767 + 2 NA Intergenic Intergenic -622907 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 626-107 chr4 127744237 127744649 + 2 NA intron (NM_001318467, intron 1 of 6) intron (NM_001318467, intron 1 of 6) 14043 NM_001318467 83447 Hs.149030 NM_031291 ENSG00000151475 SLC25A31 AAC4|ANT 4|ANT4|SFEC35kDa solute carrier family 25 member 31 protein-coding 322-576 chrX 4070850 4071135 + 2 NA Intergenic L1M6|LINE|L1 -150250 NR_146579 729162 Hs.657302 NR_146578 FAM239B - zinc finger protein 839 pseudogene pseudo 224-250 chr5 52896754 52896918 + 2 NA intron (NM_181501, intron 9 of 28) intron (NM_181501, intron 9 of 28) -92516 NR_073106 3673 Hs.482077 NM_002203 ENSG00000164171 ITGA2 BR|CD49B|GPIa|HPA-5|VLA-2|VLAA2 integrin subunit alpha 2 protein-coding 163-77 chr22 32933187 32933289 + 2 NA intron (NM_003490, intron 3 of 13) MIR|SINE|MIR 73583 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 724-66 chr5 15966191 15966785 + 2 NA Intergenic Intergenic 31306 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 658-137 chrX 94460973 94461326 + 2 NA Intergenic Intergenic 602077 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 404-76 chr12 27812945 27813297 + 2 NA Intergenic Intergenic 32888 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 442-76 chr14 60920445 60920820 + 2 NA intron (NM_001177963, intron 6 of 6) AluSx1|SINE|Alu 60447 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 150-76 chr4 59099478 59099602 + 2 NA Intergenic L1MC4|LINE|L1 85967 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 305-363 chr3 162218883 162219139 + 2 NA Intergenic Intergenic 722203 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 622-110 chr5 123244823 123245242 + 2 NA Intergenic Intergenic -154716 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 297-349 chr4 165648910 165649109 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -35630 NR_121676 101928151 Hs.639858 NR_121676 ENSG00000249500 LINC01179 - long intergenic non-protein coding RNA 1179 ncRNA 142-54 chr3 151492705 151492815 + 2 NA Intergenic L1MA9|LINE|L1 -34051 NM_178822 285313 Hs.58561 NM_178822 ENSG00000152580 IGSF10 CMF608 immunoglobulin superfamily member 10 protein-coding 321-44 chr1 246080665 246080872 + 2 NA intron (NM_022743, intron 5 of 11) L2a|LINE|L2 336644 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 156-12 chr10 76330237 76330362 + 2 NA intron (NM_001305581, intron 6 of 6) MER39|LTR|ERV1 547538 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 340-429 chr5 4468416 4468597 + 2 NA Intergenic L2a|LINE|L2 -304975 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 438-197 chr4 80006093 80006455 + 2 NA intron (NM_001286781, intron 12 of 16) L2a|LINE|L2 66955 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 204-267 chr7 19180056 19180203 + 2 NA Intergenic Intergenic -34708 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 340-226 chr19 46554074 46554319 + 2 NA intron (NM_001370550, intron 1 of 2) intron (NM_001370550, intron 1 of 2) 46720 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 308-412 chr6 19321503 19321778 + 2 NA Intergenic Intergenic -128181 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 412-212 chr3 89303770 89304136 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 196332 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 364-216 chr2 108595074 108595336 + 2 NA intron (NM_001193488, intron 1 of 9) intron (NM_001193488, intron 1 of 9) 6899 NM_001193488 3987 Hs.597715 NM_004987 ENSG00000169756 LIMS1 PINCH|PINCH-1|PINCH1 LIM zinc finger domain containing 1 protein-coding 237-188 chr2 111000001 111000236 + 2 NA intron (NM_001371254, intron 15 of 18) MLT1F1-int|LTR|ERVL-MaLR 115470 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 179-121 chr8 89368218 89368387 + 2 NA Intergenic L1MA7|LINE|L1 389409 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 310-102 chr12 45281086 45281332 + 2 NA intron (NM_001204803, intron 2 of 20) L2a|LINE|L2 -11481 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 333-326 chr22 24916578 24916753 + 2 NA intron (NM_001098498, intron 21 of 23) AluSx1|SINE|Alu 30030 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 460-268 chr7 19077903 19078294 + 2 NA Intergenic L1MA4A|LINE|L1 39538 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 599-87 chr3 104899736 104900184 + 2 NA Intergenic Intergenic -466753 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 347-473 chr7 68278284 68278477 + 2 NA Intergenic L1ME1|LINE|L1 258127 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 365-191 chr2 72908618 72908910 + 2 NA Intergenic AluJr|SINE|Alu -8755 NM_004097 2016 Hs.516090 NM_004097 ENSG00000135638 EMX1 - empty spiracles homeobox 1 protein-coding 320-405 chr4 142157503 142157809 + 2 NA intron (NM_001331040, intron 17 of 25) intron (NM_001331040, intron 17 of 25) 521073 NM_000585 3600 Hs.168132 NM_000585 ENSG00000164136 IL15 IL-15 interleukin 15 protein-coding 478-90 chr14 88708532 88708849 + 2 NA intron (NM_183387, intron 10 of 42) MIRc|SINE|MIR 84263 NM_183387 161436 Hs.325846 NM_183387 ENSG00000165521 EML5 EMAP-2|EMAP-5 EMAP like 5 protein-coding 369-126 chr14 85917197 85917527 + 2 NA Intergenic MIR|SINE|MIR -17316 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 523-11 chr1 171068242 171068636 + 2 NA Intergenic Intergenic -22466 NM_001319173 2328 Hs.445350 NM_006894 ENSG00000007933 FMO3 FMOII|TMAU|dJ127D3.1 flavin containing dimethylaniline monoxygenase 3 protein-coding 322-481 chr7 25836288 25836571 + 2 NA Intergenic Intergenic -46310 NR_157808 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 327-185 chr16 51597420 51597706 + 2 NA Intergenic Intergenic -164956 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 384-164 chr2 51907231 51907464 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -463301 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 661-78 chr5 42401634 42402233 + 2 NA Intergenic MIRb|SINE|MIR -21506 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 617-138 chr8 126870863 126871410 + 2 NA Intergenic MIR|SINE|MIR -142018 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 137-65 chr4 52939179 52939307 + 2 NA intron (NM_152540, intron 5 of 8) intron (NM_152540, intron 5 of 8) 76926 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 633-40 chr14 39543008 39543436 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -110722 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 324-359 chr3 105263925 105264118 + 2 NA Intergenic Intergenic -102692 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 348-286 chr3 8482589 8482831 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 18948 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 491-225 chr6 48853836 48854144 + 2 NA Intergenic LTR23-int|LTR|ERV1 609263 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 449-74 chr14 38809584 38809959 + 2 NA intron (NR_039982, intron 4 of 4) L1PB1|LINE|L1 -72825 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 346-483 chr8 76488467 76488713 + 2 NA intron (NR_105006, intron 3 of 5) ERVL-B4-int|LTR|ERVL 81936 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 255-361 chr6 113791904 113792145 + 2 NA Intergenic Intergenic -65321 NM_002356 4082 Hs.519909 NM_002356 ENSG00000277443 MARCKS 80K-L|MACS|PKCSL|PRKCSL myristoylated alanine rich protein kinase C substrate protein-coding 557-139 chr3 136910806 136911187 + 2 NA intron (NM_001291999, intron 1 of 3) L1MA7|LINE|L1 -19506 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 358-56 chr10 112021545 112021880 + 2 NA Intergenic Intergenic 162053 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 328-207 chr17 49533945 49534162 + 2 NA intron (NR_103773, intron 1 of 2) intron (NR_103773, intron 1 of 2) 23236 NR_106751 102465141 NR_106751 ENSG00000277478 MIR6165 hsa-mir-6165 microRNA 6165 ncRNA 354-30 chr1 192883954 192884193 + 2 NA Intergenic Intergenic 64184 NR_126003 102724954 Hs.243488 NR_126003 LINC01032 - long intergenic non-protein coding RNA 1032 ncRNA 572-76 chr18 7373087 7373523 + 2 NA Intergenic OldhAT1|DNA|hAT-Ac 87701 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 325-448 chr5 81211618 81211851 + 2 NA intron (NM_006909, intron 22 of 26) intron (NM_006909, intron 22 of 26) -21586 NM_001825 1160 Hs.80691 NM_001825 ENSG00000131730 CKMT2 SMTCK creatine kinase, mitochondrial 2 protein-coding 552-132 chr3 19212946 19213410 + 2 NA intron (NM_144633, intron 1 of 15) L3|LINE|CR1 64668 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 476-133 chr2 41803286 41803726 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -74049 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 452-6 chr1 85160457 85160757 + 2 NA intron (NM_032184, intron 6 of 6) intron (NM_032184, intron 6 of 6) 26813 NR_039619 100616481 NR_039619 ENSG00000266110 MIR4423 mir-4423 microRNA 4423 ncRNA 231-44 chr10 113780921 113781102 + 2 NA 3' UTR (NM_001193435, exon 11 of 11) 3' UTR (NM_001193435, exon 11 of 11) -2957 NR_039703 100616162 NR_039703 ENSG00000283656 MIR4483 - microRNA 4483 ncRNA 286-139 chr15 83295811 83296006 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -11244 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 355-383 chr4 172613744 172613932 + 2 NA intron (NM_001034845, intron 5 of 12) intron (NM_001034845, intron 5 of 12) 75079 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 211-66 chr12 85877137 85877338 + 2 NA intron (NM_006183, intron 2 of 3) MIRc|SINE|MIR 2942 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 361-35 chr10 23244992 23245270 + 2 NA intron (NM_001365862, intron 12 of 15) L1PA15|LINE|L1 52819 NM_178161 256297 Hs.351503 NM_178161 ENSG00000168267 PTF1A PACA|PAGEN2|PTF1-p48|bHLHa29|p48 pancreas associated transcription factor 1a protein-coding 245-177 chr2 6863897 6864034 + 2 NA intron (NR_046236, intron 1 of 4) intron (NR_046236, intron 1 of 4) 1854 NM_001256478 129607 Hs.7155 NM_207315 ENSG00000134326 CMPK2 NDK|TMPK2|TYKi|UMP-CMPK2 cytidine/uridine monophosphate kinase 2 protein-coding 258-40 chr10 13583678 13583848 + 2 NA Intergenic Intergenic -3202 NM_003675 8559 Hs.660649 NM_003675 ENSG00000165630 PRPF18 PRP18|hPrp18 pre-mRNA processing factor 18 protein-coding 346-284 chr21 29986203 29986396 + 2 NA Intergenic Intergenic -46247 NM_001320630 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 310-340 chr3 117127053 117127314 + 2 NA Intergenic L2c|LINE|L2 205752 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 176-51 chr2 37974009 37974159 + 2 NA exon (NM_001170791, exon 3 of 11) exon (NM_001170791, exon 3 of 11) 23620 NM_144713 151393 Hs.591566 NM_144713 ENSG00000115841 RMDN2 BLOCK18|FAM82A|FAM82A1|PRO34163|PYST9371|RMD-2|RMD2|RMD4 regulator of microtubule dynamics 2 protein-coding 414-132 chr18 7886800 7887196 + 2 NA intron (NM_002845, intron 2 of 30) intron (NM_002845, intron 2 of 30) 319682 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 373-431 chr9 29785015 29785301 + 2 NA Intergenic L1MA1|LINE|L1 -571557 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 144-83 chr5 94487120 94487211 + 2 NA intron (NM_001145678, intron 5 of 20) intron (NM_001145678, intron 5 of 20) 131439 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 294-369 chr5 31775269 31775448 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 136227 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 262-346 chr5 90425771 90426026 + 2 NA Intergenic L1PA13|LINE|L1 15898 NR_105024 731157 Hs.551062 NR_105024 ENSG00000255647 LOC731157 - uncharacterized LOC731157 ncRNA 353-556 chr9 72230693 72230990 + 2 NA intron (NM_001351573, intron 9 of 14) intron (NM_001351573, intron 9 of 14) -74595 NR_110953 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 148-9 chr10 58520666 58520746 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 7834 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 221-17 chr1 167099071 167099289 + 2 NA intron (NM_001080426, intron 2 of 5) L1M5|LINE|L1 5105 NM_001080426 92235 Hs.632462 NM_001080426 ENSG00000198842 DUSP27 - dual specificity phosphatase 27, atypical protein-coding 645-7 chr1 95876982 95877532 + 2 NA Intergenic Intergenic -114811 NR_125991 102723661 Hs.143911 NR_125991 ENSG00000237435 LINC02790 - long intergenic non-protein coding RNA 2790 ncRNA 247-57 chr11 61564425 61564586 + 2 NA intron (NM_001370211, intron 1 of 7) MIRb|SINE|MIR 16367 NM_001252065 9066 Hs.131188 NM_004200 ENSG00000011347 SYT7 IPCA-7|IPCA7|PCANAP7|SYT-VII|SYTVII synaptotagmin 7 protein-coding 335-251 chr2 98277647 98277818 + 2 NA intron (NM_001345864, intron 16 of 21) intron (NM_001345864, intron 16 of 21) -68423 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 150-32 chr13 67148830 67148933 + 2 NA intron (NM_001318372, intron 2 of 4) intron (NM_001318372, intron 2 of 4) 81455 NM_001318372 5101 Hs.654709 NM_020403 ENSG00000184226 PCDH9 - protocadherin 9 protein-coding 458-55 chr12 118935652 118935950 + 2 NA Intergenic Intergenic -45740 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 588-6 chr1 191396957 191397439 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -168700 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 487-102 chr15 95742756 95743186 + 2 NA Intergenic Intergenic 309878 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 281-432 chr8 83930003 83930192 + 2 NA Intergenic (TAT)n|Simple_repeat|Simple_repeat -252690 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 338-553 chr8 112605189 112605427 + 2 NA intron (NM_001363185, intron 20 of 66) L1PA15|LINE|L1 -38185 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 338-380 chr4 53871885 53872162 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 115259 NR_027153 402176 Hs.452943 NM_001011538 RPL21P44 RPL21_17_477 ribosomal protein L21 pseudogene 44 pseudo 280-44 chr10 18690311 18690523 + 2 NA Intergenic Intergenic 30986 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 339-140 chr13 58716221 58716407 + 2 NA Intergenic LTR49-int|LTR|ERV1 -483197 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 378-405 chr7 52726239 52726439 + 2 NA Intergenic Intergenic -309294 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 300-363 chr5 61217930 61218159 + 2 NA intron (NR_109908, intron 3 of 3) intron (NR_109908, intron 3 of 3) 46885 NR_146624 105378992 Hs.621682 NR_146624 ENSG00000249279 LINC02057 - long intergenic non-protein coding RNA 2057 ncRNA 627-130 chrX 151193826 151194262 + 2 NA Intergenic L1MA3|LINE|L1 -16208 NR_135300 100128688 Hs.460993 NR_135300 ENSG00000234696 GPR50-AS1 - GPR50 antisense RNA 1 ncRNA 215-114 chr17 65930281 65930466 + 2 NA intron (NM_001353129, intron 18 of 26) intron (NM_001353129, intron 18 of 26) -103830 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 309-128 chr13 62287648 62287888 + 2 NA Intergenic Intergenic -33537 NR_149075 106144607 Hs.562580 NR_149075 ENSG00000227611 LINC01074 - long intergenic non-protein coding RNA 1074 ncRNA 335-318 chr21 40040555 40040796 + 2 NA intron (NR_073202, intron 32 of 32) intron (NR_073202, intron 32 of 32) 171756 NR_039917 100616148 NR_039917 ENSG00000263973 MIR4760 - microRNA 4760 ncRNA 244-75 chr12 130653096 130653254 + 2 NA intron (NM_001351226, intron 1 of 21) MSTB-int|LTR|ERVL-MaLR -19255 NM_001351232 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 430-133 chr19 30306216 30306544 + 2 NA Intergenic Intergenic -66004 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 325-152 chr13 88525451 88525633 + 2 NA Intergenic MLT2B1|LTR|ERVL -15287 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 257-369 chr6 155916385 155916552 + 2 NA Intergenic Intergenic -30329 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 520-239 chr5 87840063 87840437 + 2 NA Intergenic L1MA4A|LINE|L1 178208 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 484-96 chr17 61245751 61246143 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 121757 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 311-513 chr8 98801086 98801281 + 2 NA intron (NM_001256312, intron 3 of 12) LTR12C|LTR|ERV1 24488 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 277-460 chrX 66168148 66168367 + 2 NA intron (NM_001367234, intron 1 of 20) intron (NM_001367234, intron 1 of 20) 507 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 182-95 chr2 135081388 135081496 + 2 NA intron (NM_001172435, intron 3 of 24) (GT)n|Simple_repeat|Simple_repeat 29150 NM_001172435 22930 Hs.306327 NM_012233 ENSG00000115839 RAB3GAP1 P130|RAB3GAP|RAB3GAP130|WARBM1 RAB3 GTPase activating protein catalytic subunit 1 protein-coding 424-30 chr10 90132576 90132854 + 2 NA Intergenic L1MB4|LINE|L1 -175342 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 266-67 chr11 84474608 84474840 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -157385 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 337-436 chr5 28439694 28439900 + 2 NA Intergenic L1M5|LINE|L1 -152132 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 560-16 chr10 52545292 52545638 + 2 NA Intergenic Intergenic -74932 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 345-48 chr10 20595730 20596071 + 2 NA Intergenic Intergenic 43930 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 208-209 chr5 44637168 44637290 + 2 NA Intergenic Intergenic -126947 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 272-244 chr21 19929200 19929392 + 2 NA Intergenic Intergenic -29541 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 381-228 chr20 39591573 39591823 + 2 NA Intergenic Intergenic -366950 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 277-260 chr3 84304835 84305022 + 2 NA Intergenic L1PA2|LINE|L1 564647 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 172-67 chr2 195958682 195958803 + 2 NA intron (NM_018897, intron 18 of 64) MIR|SINE|MIR 110095 NM_018897 56171 Hs.97403 NM_018897 ENSG00000118997 DNAH7 - dynein axonemal heavy chain 7 protein-coding 478-307 chr9 73743788 73744133 + 2 NA Intergenic Intergenic 592095 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 632-75 chr3 88683209 88683718 + 2 NA Intergenic Intergenic 345007 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 720-58 chr3 21523168 21523805 + 2 NA intron (NM_024697, intron 3 of 7) intron (NM_024697, intron 3 of 7) -19303 NR_046731 100874216 Hs.661720 NR_046731 ENSG00000225542 ZNF385D-AS1 - ZNF385D antisense RNA 1 ncRNA 287-57 chr10 67442362 67442603 + 2 NA intron (NM_001127384, intron 5 of 17) L1M1|LINE|L1 -39072 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 400-82 chr14 21911227 21911521 + 2 NA Intergenic Intergenic -240357 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 368-11 chr1 75718316 75718606 + 2 NA Intergenic MER4B-int|LTR|ERV1 -5886 NM_001286043 34 Hs.445040 NM_000016 ENSG00000117054 ACADM ACAD1|MCAD|MCADH acyl-CoA dehydrogenase medium chain protein-coding 227-377 chr8 123502840 123503023 + 2 NA 3' UTR (NM_001242463, exon 7 of 7) 3' UTR (NM_001242463, exon 7 of 7) 29212 NM_148177 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 148-57 chr3 130863372 130863508 + 2 NA intron (NM_001199181, intron 1 of 26) intron (NM_001199181, intron 1 of 26) 12845 NM_001199181 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 293-310 chr4 91972616 91972815 + 2 NA Intergenic L1ME1|LINE|L1 304587 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 515-137 chr2 221248951 221249419 + 2 NA Intergenic MIR|SINE|MIR 323119 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 209-247 chr5 19479134 19479314 + 2 NA intron (NM_001349559, intron 12 of 12) intron (NM_001349559, intron 12 of 12) 407048 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 240-37 chr10 26376020 26376243 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -62210 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 283-87 chr11 97883924 97884199 + 2 NA Intergenic L2|LINE|L2 -1136888 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 333-439 chr5 31798830 31799108 + 2 NA 5' UTR (NM_178140, exon 2 of 25) 5' UTR (NM_178140, exon 2 of 25) 137190 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 170-97 chr3 104129495 104129644 + 2 NA Intergenic L2|LINE|L2 -605453 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 189-182 chr6 143127280 143127432 + 2 NA intron (NM_001366358, intron 1 of 5) intron (NM_001366358, intron 1 of 5) 1217 NM_001366358 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 512-266 chr8 34868058 34868477 + 2 NA Intergenic Intergenic 84346 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 333-388 chr4 60667680 60667848 + 2 NA Intergenic L2b|LINE|L2 -254855 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 311-30 chr1 191020867 191021134 + 2 NA Intergenic Intergenic 207498 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 397-36 chr10 76077278 76077615 + 2 NA intron (NM_001305581, intron 5 of 6) intron (NM_001305581, intron 5 of 6) 294685 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 360-111 chr14 21122591 21122939 + 2 NA Intergenic MER21C|LTR|ERVL -18061 NM_001102454 51222 Hs.250493 NM_016423 ENSG00000165804 ZNF219 ZFP219 zinc finger protein 219 protein-coding 556-146 chr3 108848127 108848667 + 2 NA intron (NM_001317747, intron 3 of 4) intron (NM_001317747, intron 3 of 4) 25611 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 309-561 chr8 129561218 129561486 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 13666 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 647-89 chr6 155406176 155406767 + 2 NA intron (NM_015718, intron 12 of 13) (ATA)n|Simple_repeat|Simple_repeat 49368 NM_015718 50508 Hs.247776 NM_015718 ENSG00000074771 NOX3 GP91-3|MOX-2 NADPH oxidase 3 protein-coding 305-330 chr22 48569196 48569390 + 2 NA intron (NM_001082967, intron 1 of 3) intron (NM_001082967, intron 1 of 3) -7047 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 577-151 chr5 84837067 84837485 + 2 NA Intergenic Intergenic -452396 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 186-106 chr3 38713202 38713317 + 2 NA intron (NM_006514, intron 21 of 26) intron (NM_006514, intron 21 of 26) -63572 NM_001160160 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 188-203 chr8 83569305 83569462 + 2 NA Intergenic L2|LINE|L2 165625 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 376-8 chr1 76744522 76744792 + 2 NA Intergenic L1MB1|LINE|L1 34610 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 640-95 chr4 69948385 69948820 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 12409 NM_001302770 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 329-290 chr2 142820137 142820451 + 2 NA Intergenic Intergenic -57370 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 479-93 chr19 37353286 37353638 + 2 NA intron (NM_001329779, intron 4 of 4) L1ME3D|LINE|L1 -17637 NM_032453 84503 Hs.590940 NM_032453 ENSG00000189164 ZNF527 - zinc finger protein 527 protein-coding 372-414 chr5 130653072 130653274 + 2 NA Intergenic AluSc|SINE|Alu 512083 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 259-396 chr8 83647085 83647278 + 2 NA Intergenic L1M5|LINE|L1 243423 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 414-213 chr3 85987054 85987425 + 2 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -159189 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 209-332 chr8 119025306 119025437 + 2 NA intron (NM_001324095, intron 1 of 7) intron (NM_001324095, intron 1 of 7) -41876 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 255-409 chr8 25790507 25790635 + 2 NA Intergenic L1M3|LINE|L1 254842 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 209-190 chr3 19912719 19912837 + 2 NA intron (NM_001330688, intron 7 of 14) L1M1|LINE|L1 21439 NM_144715 151651 Hs.733920 NM_144715 ENSG00000163576 EFHB CFAP21 EF-hand domain family member B protein-coding 353-89 chr11 82327986 82328207 + 2 NA intron (NR_120571, intron 3 of 7) MLT1H|LTR|ERVL-MaLR 75817 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 321-13 chr1 82876141 82876380 + 2 NA Intergenic Intergenic -26923 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 349-454 chr6 122122521 122122812 + 2 NA Intergenic Intergenic -276885 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 511-67 chr14 68104213 68104640 + 2 NA intron (NM_133509, intron 7 of 10) intron (NM_133509, intron 7 of 10) 280834 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 382-84 chr12 126010777 126010999 + 2 NA Intergenic Intergenic -27514 NR_034132 400084 Hs.156191 NR_034132 ENSG00000249267 LINC00939 - long intergenic non-protein coding RNA 939 ncRNA 245-104 chr12 96830219 96830404 + 2 NA intron (NM_001306084, intron 66 of 67) L1MB4|LINE|L1 -76946 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 395-63 chr11 111535217 111535501 + 2 NA intron (NM_001100388, intron 5 of 5) intron (NM_001100388, intron 5 of 5) -4921 NM_001318799 143903 Hs.503831 NM_178834 ENSG00000204381 LAYN - layilin protein-coding 336-170 chr14 76005177 76005417 + 2 NA intron (NM_001102564, intron 2 of 8) L1MEf|LINE|L1 19534 NM_052873 112752 Hs.532626 NM_052873 ENSG00000119650 IFT43 C14orf179|CED3|RP81|SRTD18 intraflagellar transport 43 protein-coding 246-255 chr3 73967080 73967238 + 2 NA Intergenic Intergenic 157915 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 371-317 chr5 90575670 90575979 + 2 NA intron (NR_003149, intron 1 of 89) intron (NR_003149, intron 1 of 89) 17027 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 353-115 chr12 63506066 63506260 + 2 NA Intergenic L1MA9|LINE|L1 162330 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 414-21 chr1 237535573 237535959 + 2 NA intron (NM_001035, intron 25 of 104) L1MEf|LINE|L1 64647 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 216-229 chr3 95987095 95987227 + 2 NA Intergenic Intergenic -303968 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 208-109 chr2 14033643 14033831 + 2 NA Intergenic Intergenic 367221 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 367-449 chr8 78874937 78875181 + 2 NA Intergenic L1PA8A|LINE|L1 37530 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 492-151 chr20 20822771 20823101 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -110292 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 295-137 chr14 81609325 81609595 + 2 NA intron (NR_110074, intron 1 of 2) intron (NR_110074, intron 1 of 2) 13601 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 393-323 chr7 26483829 26484080 + 2 NA intron (NR_148500, intron 2 of 5) L3b|LINE|CR1 54871 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 307-457 chr7 78251931 78252091 + 2 NA intron (NM_001301128, intron 10 of 20) AluJo|SINE|Alu -95231 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 263-296 chr4 85413254 85413395 + 2 NA Intergenic Intergenic -61826 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 324-212 chr16 80394082 80394351 + 2 NA intron (NR_120307, intron 2 of 5) L1MC5|LINE|L1 -146518 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 540-4 chr1 57834810 57835210 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -25571 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 285-296 chr4 12302344 12302530 + 2 NA Intergenic L1MC4|LINE|L1 78986 NR_125910 101929019 Hs.434234 NR_125910 ENSG00000251210 LINC02270 - long intergenic non-protein coding RNA 2270 ncRNA 594-37 chr12 69022064 69022518 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -59051 NM_001874 1368 Hs.654387 NM_001874 ENSG00000135678 CPM - carboxypeptidase M protein-coding 310-469 chr7 12981611 12981791 + 2 NA Intergenic MIR|SINE|MIR 294068 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 273-65 chr10 111866425 111866599 + 2 NA Intergenic Intergenic 317253 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 320-280 chr2 137169617 137169903 + 2 NA intron (NM_001316349, intron 6 of 27) intron (NM_001316349, intron 6 of 27) 404215 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 542-170 chr5 90489662 90490038 + 2 NA intron (NM_001370351, intron 3 of 7) AluSx|SINE|Alu 14986 NM_001370353 10622 Hs.282387 NM_006467 ENSG00000113356 POLR3G RPC32|RPC7 RNA polymerase III subunit G protein-coding 300-499 chrX 63837889 63838095 + 2 NA Intergenic MIR3|SINE|MIR -51905 NR_031567 100302115 NR_031567 ENSG00000222532 MIR1468 MIRN1468|hsa-mir-1468|mir-1468 microRNA 1468 ncRNA 333-64 chr10 90706187 90706481 + 2 NA Intergenic (TACATA)n|Simple_repeat|Simple_repeat 151705 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 286-303 chr4 14218025 14218217 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 106153 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 372-175 chr16 58363184 58363376 + 2 NA Intergenic L1M2|LINE|L1 -29191 NM_022770 64785 Hs.47125 NM_022770 ENSG00000181938 GINS3 PSF3 GINS complex subunit 3 protein-coding 141-65 chr4 36124129 36124237 + 2 NA intron (NR_146894, intron 22 of 32) intron (NR_146894, intron 22 of 32) 119756 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 338-514 chr7 94548760 94548999 + 2 NA intron (NM_001363428, intron 13 of 17) intron (NM_001363428, intron 13 of 17) 39070 NM_022900 64921 Hs.260041 NM_022900 ENSG00000127995 CASD1 C7orf12|NBLA04196|SOAT CAS1 domain containing 1 protein-coding 365-392 chr8 30479364 30479701 + 2 NA intron (NM_001008710, intron 4 of 8) intron (NM_001008710, intron 4 of 8) -94131 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 191-190 chr6 134503266 134503406 + 2 NA non-coding (NR_038216, exon 3 of 3) non-coding (NR_038216, exon 3 of 3) -24439 NR_125852 101928231 Hs.634168 NR_125852 CT69 - cancer/testis associated transcript 69 ncRNA 446-305 chr8 83045735 83046001 + 2 NA Intergenic Intergenic 133764 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 358-231 chr2 122179229 122179527 + 2 NA Intergenic Intergenic 423727 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 468-117 chr17 59111497 59111865 + 2 NA 3' UTR (NM_001330399, exon 4 of 4) 3' UTR (NM_001330399, exon 4 of 4) -4801 NM_001353083 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 460-252 chr6 8077707 8078058 + 2 NA intron (NM_001135650, intron 3 of 3) AluJb|SINE|Alu 8651 NR_003703 100124533 NR_003703 SCARNA27 - small Cajal body-specific RNA 27 ncRNA 274-292 chr4 124699556 124699776 + 2 NA intron (NM_001167882, intron 1 of 3) intron (NM_001167882, intron 1 of 3) 13066 NM_020337 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 265-255 chr4 27173917 27174122 + 2 NA Intergenic Intergenic -43460 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 328-195 chr16 60119955 60120177 + 2 NA Intergenic L1MEf|LINE|L1 239727 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 312-267 chr2 147643958 147644187 + 2 NA Intergenic Intergenic -200445 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 409-124 chr19 37332965 37333356 + 2 NA intron (NR_138110, intron 5 of 6) intron (NR_138110, intron 5 of 6) -1464 NR_138121 284459 Hs.640243 NM_181786 ENSG00000181666 ZNF875 HKR1 zinc finger protein 875 protein-coding 653-85 chr3 57265972 57266623 + 2 NA intron (NM_012096, intron 19 of 21) L1MA2|LINE|L1 -3269 NR_135535 105377102 Hs.745243 NR_135535 LOC105377102 - uncharacterized LOC105377102 ncRNA 405-221 chr4 36779726 36780046 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -137986 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 328-441 chr5 30695584 30695843 + 2 NA Intergenic Intergenic -497973 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 207-299 chr8 117215002 117215141 + 2 NA Intergenic Intergenic 80076 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 446-321 chr8 140592484 140592865 + 2 NA intron (NM_001164623, intron 1 of 17) AluJr|SINE|Alu 42959 NM_012154 27161 Hs.660189 NM_012154 ENSG00000123908 AGO2 CASC7|EIF2C2|LINC00980|PPD|Q10 argonaute RISC catalytic component 2 protein-coding 409-308 chr9 71341722 71342027 + 2 NA intron (NM_001366143, intron 1 of 25) L1MC5a|LINE|L1 105097 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 263-350 chr6 22599674 22599865 + 2 NA Intergenic LTR33|LTR|ERVL 30203 NM_138574 154150 Hs.629246 NM_138574 ENSG00000112273 HDGFL1 HRP-1|Hdgfrp1|PWWP1|dJ309H15.1 HDGF like 1 protein-coding 430-272 chr6 150093703 150094045 + 2 NA Intergenic Intergenic -24753 NM_024518 79465 Hs.15422 NM_024518 ENSG00000131019 ULBP3 N2DL-3|NKG2DL3|RAET1N UL16 binding protein 3 protein-coding 449-197 chr4 159038856 159039148 + 2 NA Intergenic AluJb|SINE|Alu -3773 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 228-162 chr2 61209437 61209634 + 2 NA intron (NM_014709, intron 69 of 79) Tigger3b|DNA|TcMar-Tigger 32117 NR_152211 130872 Hs.655602 NM_152392 ENSG00000173209 AHSA2P AHA1|AHSA2|Hch1 activator of HSP90 ATPase homolog 2, pseudogene pseudo 274-147 chr15 95800176 95800391 + 2 NA Intergenic Intergenic 327558 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 310-122 chr14 22115940 22116146 + 2 NA Intergenic L1ME1|LINE|L1 316710 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 311-139 chr14 66264442 66264729 + 2 NA Intergenic Intergenic -221786 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 280-426 chr8 129297478 129297723 + 2 NA Intergenic L1MB8|LINE|L1 -56360 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 387-99 chr13 90901637 90901865 + 2 NA intron (NR_027039, intron 3 of 5) intron (NR_027039, intron 3 of 5) 24846 NR_027039 144776 Hs.434120 NR_027039 ENSG00000231674 LINC00410 - long intergenic non-protein coding RNA 410 ncRNA 377-319 chr5 35697140 35697489 + 2 NA intron (NM_024867, intron 14 of 36) L1MEb|LINE|L1 79451 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 497-48 chr11 113095289 113095683 + 2 NA intron (NM_181351, intron 1 of 18) intron (NM_181351, intron 1 of 18) -132026 NR_120563 101928847 Hs.711235 NR_120563 ENSG00000247416 LOC101928847 - uncharacterized LOC101928847 ncRNA 365-313 chr5 27206264 27206518 + 2 NA Intergenic Intergenic -167805 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 524-125 chr2 164546354 164546717 + 2 NA intron (NM_004490, intron 3 of 13) L1M3f|LINE|L1 21960 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 399-330 chr9 84344939 84345179 + 2 NA intron (NM_022127, intron 1 of 18) MIR|SINE|MIR -4301 NR_037638 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 309-52 chr10 71945102 71945311 + 2 NA Intergenic Harlequin-int|LTR|ERV1 -19189 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 343-359 chr3 135687866 135688161 + 2 NA Intergenic Intergenic -277715 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 283-396 chr6 88139593 88139864 + 2 NA TTS (NM_001365874) TTS (NM_001365874) 5609 NM_033181 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 485-270 chr7 95805898 95806260 + 2 NA intron (NM_004411, intron 2 of 16) intron (NM_004411, intron 2 of 16) 33573 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 333-195 chr17 74073680 74073891 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -129893 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 386-69 chr12 14729692 14730071 + 2 NA Intergenic L1MDa|LINE|L1 -33282 NM_004963 2984 Hs.524278 NM_004963 ENSG00000070019 GUCY2C DIAR6|GC-C|GUC2C|MECIL|MUCIL|STAR guanylate cyclase 2C protein-coding 333-613 chr9 124440549 124440858 + 2 NA Intergenic Intergenic -25261 NM_002799 5695 Hs.213470 NM_002799 ENSG00000136930 PSMB7 Z proteasome subunit beta 7 protein-coding 267-448 chr9 35270396 35270571 + 2 NA intron (NM_006377, intron 7 of 38) L1MC5|LINE|L1 -71413 NM_001371188 347-452 chr7 10295730 10295974 + 2 NA Intergenic Intergenic -406824 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 209-351 chrX 15467016 15467193 + 2 NA intron (NM_001018109, intron 3 of 9) intron (NM_001018109, intron 3 of 9) 24205 NR_037859 100532742 Hs.495728 NR_037859 PIR-FIGF - PIR-FIGF readthrough ncRNA 417-244 chr6 104286441 104286707 + 2 NA Intergenic Intergenic 572972 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 383-350 chr7 19556745 19557093 + 2 NA Intergenic L1P4|LINE|L1 148517 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 189-26 chr11 10510796 10510969 + 2 NA TTS (NM_016422) TTS (NM_016422) -1696 NM_001190702 100463486 NM_001190702 ENSG00000255823 MTRNR2L8 HN8 MT-RNR2 like 8 protein-coding 257-153 chr18 6691140 6691344 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -38474 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 275-25 chr1 239329659 239329845 + 2 NA Intergenic L2c|LINE|L2 -56816 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 550-128 chr2 229175553 229176075 + 2 NA intron (NM_001100818, intron 1 of 2) intron (NM_001100818, intron 1 of 2) 56278 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 510-19 chr1 208823863 208824219 + 2 NA Intergenic AluJb|SINE|Alu 95353 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 234-359 chr7 33854549 33854737 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie -50272 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 210-280 chr8 62956611 62956777 + 2 NA intron (NM_001304533, intron 6 of 6) intron (NM_001304533, intron 6 of 6) -21167 NR_027378 643763 Hs.491856 NM_001039769 ENSG00000274956 NKAIN3-IT1 UG0898H09 NKAIN3 intronic transcript ncRNA 351-307 chr3 94800990 94801196 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -137170 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 327-445 chr6 150452870 150453132 + 2 NA Intergenic Intergenic 83989 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 420-50 chr11 17211212 17211553 + 2 NA Intergenic L2b|LINE|L2 -3396 NM_001321380 5286 Hs.175343 NM_002645 ENSG00000011405 PIK3C2A CPK|OCSKD|PI3-K-C2(ALPHA)|PI3-K-C2A|PI3K-C2-alpha|PI3K-C2alpha phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 366-138 chr15 56739730 56739917 + 2 NA Intergenic MLT1J2-int|LTR|ERVL-MaLR -5737 NM_001288589 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 221-269 chr6 133026850 133027002 + 2 NA Intergenic L1ME3B|LINE|L1 -61154 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 129-57 chr3 173433061 173433153 + 2 NA intron (NM_001365932, intron 1 of 5) L1MC4a|LINE|L1 35363 NM_001365931 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 203-121 chr2 123339322 123339506 + 2 NA Intergenic L1ME2|LINE|L1 -265933 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 515-117 chr2 84695648 84696013 + 2 NA intron (NM_001370, intron 46 of 76) intron (NM_001370, intron 46 of 76) 179375 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 224-166 chr2 217298884 217299088 + 2 NA intron (NR_133642, intron 3 of 5) intron (NR_133642, intron 3 of 5) 16253 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 270-47 chr10 130873498 130873732 + 2 NA Intergenic (GA)n|Simple_repeat|Simple_repeat 89053 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 518-207 chr4 73601017 73601378 + 2 NA intron (NM_001270391, intron 2 of 9) intron (NM_001270391, intron 2 of 9) 19239 NM_177532 166824 Hs.529677 NM_177532 ENSG00000169435 RASSF6 - Ras association domain family member 6 protein-coding 239-306 chr5 28016490 28016698 + 2 NA Intergenic L1ME3B|LINE|L1 271071 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 240-198 chr18 75545991 75546160 + 2 NA Intergenic Intergenic -118372 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 372-157 chr14 88506155 88506477 + 2 NA intron (NM_007039, intron 4 of 18) AluJr|SINE|Alu 48691 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 528-94 chr15 63642122 63642476 + 2 NA intron (NM_003922, intron 59 of 77) intron (NM_003922, intron 59 of 77) -41472 NR_034080 100130855 Hs.631163 NR_034080 ENSG00000259248 USP3-AS1 - USP3 antisense RNA 1 ncRNA 270-64 chr11 97339232 97339420 + 2 NA Intergenic Intergenic 830901 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 517-46 chr11 78456103 78456480 + 2 NA intron (NM_024678, intron 11 of 13) intron (NM_024678, intron 11 of 13) -26455 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 389-75 chr12 15455349 15455584 + 2 NA intron (NM_030667, intron 1 of 26) L1MB1|LINE|L1 -91145 NM_030668 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 280-316 chr5 29867091 29867290 + 2 NA Intergenic L1MA8|LINE|L1 -13370 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 255-258 chr3 73130262 73130416 + 2 NA Intergenic L1MD1|LINE|L1 68680 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 426-76 chr14 94987711 94988044 + 2 NA Intergenic L1MEf|LINE|L1 145626 NM_001195573 23405 Hs.87889 NM_030621 ENSG00000100697 DICER1 DCR1|Dicer|Dicer1e|GLOW|HERNA|K12H4.8-LIKE|MNG1|RMSE2 dicer 1, ribonuclease III protein-coding 399-235 chr4 128513386 128513767 + 2 NA intron (NR_125882, intron 7 of 8) LTR107_Mam|LTR|LTR 85560 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 351-279 chr21 43202195 43202388 + 2 NA Intergenic AluJo|SINE|Alu 32055 NM_001320719 102724652 Hs.184085 NM_001314050 ENSG00000276076 CRYAA2 CRYAA crystallin alpha A2 protein-coding 398-298 chr6 85268780 85269013 + 2 NA Intergenic Intergenic 121290 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 324-82 chr11 28685898 28686135 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -208468 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 416-119 chr14 59424035 59424376 + 2 NA Intergenic Intergenic 41175 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 205-300 chrX 20756580 20756754 + 2 NA Intergenic L1MA3|LINE|L1 -489758 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 261-2 chr1 13756686 13756886 + 2 NA intron (NM_001135610, intron 6 of 7) intron (NM_001135610, intron 6 of 7) 7371 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 613-76 chr22 48012980 48013505 + 2 NA Intergenic L1MC3|LINE|L1 -261122 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 236-20 chr1 167002195 167002350 + 2 NA intron (NM_032858, intron 5 of 11) intron (NM_032858, intron 5 of 11) 12992 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 229-172 chr2 33460789 33460959 + 2 NA intron (NM_001349979, intron 1 of 17) intron (NM_001349979, intron 1 of 17) 2819 NM_001349979 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 294-383 chr5 94434848 94435063 + 2 NA intron (NM_001145678, intron 14 of 20) intron (NM_001145678, intron 14 of 20) 183649 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 279-260 chr3 81895171 81895371 + 2 NA Intergenic HAL1|LINE|L1 -90871 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 506-130 chr2 40421203 40421535 + 2 NA intron (NM_001351483, intron 2 of 8) MIRb|SINE|MIR 8935 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 360-189 chr19 22476303 22476565 + 2 NA intron (NR_160728, intron 1 of 1) intron (NR_160728, intron 1 of 1) 51515 NR_110427 101929124 Hs.589610 NR_110427 ENSG00000260599 LOC101929124 - uncharacterized LOC101929124 ncRNA 231-142 chr18 79277798 79277953 + 2 NA intron (NR_148360, intron 14 of 31) L1ME3D|LINE|L1 -118055 NM_172388 4772 Hs.534074 NM_006162 ENSG00000131196 NFATC1 NF-ATC|NF-ATc1.2|NFAT2|NFATc nuclear factor of activated T cells 1 protein-coding 214-255 chr5 8437805 8437983 + 2 NA intron (NR_039984, intron 2 of 5) intron (NR_039984, intron 2 of 5) 19670 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 483-191 chr4 155657500 155657773 + 2 NA Intergenic L1MEd|LINE|L1 -9074 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 394-228 chr3 182751222 182751564 + 2 NA Intergenic MIR|SINE|MIR -42111 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 392-303 chr7 34613834 34614132 + 2 NA intron (NR_033664, intron 2 of 4) L1MB3|LINE|L1 -44235 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 287-444 chr9 121981299 121981503 + 2 NA intron (NM_001139442, intron 4 of 8) L1MEc|LINE|L1 112205 NM_194252 158135 Hs.438937 NM_194252 ENSG00000175764 TTLL11 C9orf20|bA244O19.1 tubulin tyrosine ligase like 11 protein-coding 241-20 chr1 166030721 166030896 + 2 NA Intergenic L2|LINE|L2 122887 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 290-456 chr8 107818351 107818626 + 2 NA Intergenic Intergenic 263451 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 382-39 chr10 72550511 72550870 + 2 NA intron (NM_006077, intron 4 of 11) L1M4|LINE|L1 -26704 NM_001195519 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 224-345 chr9 8435882 8436047 + 2 NA intron (NM_130392, intron 20 of 30) intron (NM_130392, intron 20 of 30) 297982 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 187-129 chr4 59005015 59005130 + 2 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) -8501 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 834-9 chr13 20308151 20308774 + 2 NA Intergenic L1MEf|LINE|L1 -76067 NM_001110221 10804 Hs.511757 NM_006783 ENSG00000121742 GJB6 CX30|DFNA3|DFNA3B|DFNB1B|ECTD2|ED2|EDH|HED|HED2 gap junction protein beta 6 protein-coding 253-435 chr9 90502656 90502870 + 2 NA intron (NR_034157, intron 4 of 5) intron (NR_034157, intron 4 of 5) -69274 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 249-19 chr1 153237898 153238066 + 2 NA Intergenic Intergenic 20398 NM_001195571 574414 Hs.135098 NM_001195571 ENSG00000203783 PRR9 - proline rich 9 protein-coding 460-92 chr15 94252074 94252347 + 2 NA Intergenic L1MB3|LINE|L1 -45991 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 233-231 chr3 41635579 41635702 + 2 NA intron (NR_136342, intron 28 of 34) MIRb|SINE|MIR 326463 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 486-156 chr2 150844721 150845048 + 2 NA Intergenic Intergenic 215987 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 421-13 chr1 160245474 160245739 + 2 NA intron (NR_028104, intron 1 of 12) intron (NR_028104, intron 1 of 12) -16143 NR_147618 100287049 Hs.657648 NR_147618 ENSG00000228606 LOC100287049 - uncharacterized LOC100287049 ncRNA 245-60 chr10 118508906 118509148 + 2 NA Intergenic Intergenic 86621 NM_004248 2834 Hs.248119 NM_004248 ENSG00000119973 PRLHR GPR10|GR3|PrRPR prolactin releasing hormone receptor protein-coding 241-219 chr20 42487780 42488014 + 2 NA intron (NM_133170, intron 7 of 31) L1ME5|LINE|L1 -197586 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 321-474 chr5 113878610 113878867 + 2 NA Intergenic L1MB3|LINE|L1 365044 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 390-80 chr13 37405118 37405386 + 2 NA Intergenic Intergenic 79532 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 209-125 chr17 58402599 58402800 + 2 NA promoter-TSS (NM_001305545) promoter-TSS (NM_001305545) 22 NM_001305545 54894 Hs.584916 NM_017763 ENSG00000108375 RNF43 RNF124|SSPCS|URCC ring finger protein 43 protein-coding 223-185 chr20 35237432 35237611 + 2 NA intron (NM_001355008, intron 2 of 14) MLT1D|LTR|ERVL-MaLR 10831 NM_006690 10893 Hs.715494 NM_006690 ENSG00000125966 MMP24 MMP-24|MMP25|MT-MMP 5|MT-MMP5|MT5-MMP|MT5MMP|MTMMP5 matrix metallopeptidase 24 protein-coding 469-299 chr9 95424568 95424838 + 2 NA Intergenic Intergenic -38906 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 682-9 chr10 24297541 24298052 + 2 NA intron (NM_019590, intron 2 of 20) intron (NM_019590, intron 2 of 20) 22111 NR_030334 693188 NR_030334 ENSG00000207930 MIR603 MIRN603|hsa-mir-603 microRNA 603 ncRNA 340-42 chr10 32752180 32752434 + 2 NA intron (NM_001321115, intron 29 of 43) ERVL-E-int|LTR|ERVL 149165 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 565-117 chr3 90623303 90623859 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1515960 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 356-200 chr17 72291245 72291432 + 2 NA Intergenic L2c|LINE|L2 -51473 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 341-494 chr7 49330246 49330472 + 2 NA Intergenic L1M3de|LINE|L1 405812 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 302-504 chrX 145622516 145622779 + 2 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat -195182 NM_001144003 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 202-82 chr15 27628302 27628476 + 2 NA Intergenic L1MEg|LINE|L1 -467070 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 400-277 chr5 29411400 29411604 + 2 NA Intergenic L1MA6|LINE|L1 -15526 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 469-274 chr8 32364533 32364926 + 2 NA intron (NM_013962, intron 1 of 4) L1ME4b|LINE|L1 -76017 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 303-476 chr8 134183314 134183532 + 2 NA Intergenic Intergenic 296927 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 314-39 chr1 208253465 208253682 + 2 NA Intergenic Intergenic -9189 NM_025179 5362 Hs.497626 NM_025179 ENSG00000076356 PLXNA2 OCT|PLXN2 plexin A2 protein-coding 351-495 chr8 123888761 123888996 + 2 NA intron (NM_001039112, intron 1 of 40) LOR1-int|LTR|ERV1 36891 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 385-33 chr10 67591411 67591747 + 2 NA intron (NM_001127384, intron 3 of 17) L1MEg|LINE|L1 74081 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 220-359 chr8 40577355 40577503 + 2 NA intron (NM_024645, intron 6 of 6) L1MA5|LINE|L1 -234066 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 484-245 chr7 5115047 5115412 + 2 NA Intergenic Intergenic 29317 NR_034163 645700 Hs.690815 NR_034163 ENSG00000159904 ZNF890P - zinc finger protein 890, pseudogene pseudo 315-460 chr8 19474326 19474609 + 2 NA intron (NM_001130518, intron 4 of 9) intron (NM_001130518, intron 4 of 9) 128078 NM_001354499 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 351-223 chr2 89849375 89849627 + 2 NA Intergenic Intergenic -211594 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 325-22 chr1 118764711 118764913 + 2 NA Intergenic L1MB1|LINE|L1 223531 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 296-277 chr21 22400731 22400963 + 2 NA Intergenic MER51-int|LTR|ERV1 302230 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 456-177 chr20 12296252 12296580 + 2 NA Intergenic L1M2|LINE|L1 378523 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 406-147 chr2 100115887 100116262 + 2 NA intron (NM_002285, intron 1 of 23) L1MEg|LINE|L1 -10491 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 323-458 chr6 54552777 54553071 + 2 NA Intergenic L1PREC2|LINE|L1 244483 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 428-286 chr8 31531405 31531664 + 2 NA Intergenic HAL1|LINE|L1 -108218 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 482-202 chr5 78128482 78128814 + 2 NA intron (NM_003664, intron 16 of 26) intron (NM_003664, intron 16 of 26) 166050 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 278-254 chr21 31033699 31033883 + 2 NA Intergenic Intergenic 4685 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 225-218 chr3 110153103 110153252 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 550349 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 266-240 chr3 32274507 32274769 + 2 NA intron (NM_001320308, intron 1 of 2) L1MC4|LINE|L1 35958 NM_178868 152189 Hs.154986 NM_178868 ENSG00000170293 CMTM8 CKLFSF8|CKLFSF8-V2 CKLF like MARVEL transmembrane domain containing 8 protein-coding 582-103 chr4 32507111 32507621 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 156328 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 278-444 chr8 142857352 142857494 + 2 NA Intergenic L1MD3|LINE|L1 22397 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 350-192 chr18 38002982 38003269 + 2 NA Intergenic Intergenic 345990 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 333-530 chr7 16403954 16404243 + 2 NA intron (NM_001101426, intron 2 of 9) LTR37A|LTR|ERV1 17440 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 329-592 chr8 129407738 129407995 + 2 NA intron (NR_130920, intron 1 of 3) intron (NR_130920, intron 1 of 3) 76276 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 476-253 chr7 97705482 97705812 + 2 NA Intergenic L1PREC2|LINE|L1 -26439 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 284-279 chr4 31288433 31288678 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 117411 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 330-186 chr16 31928408 31928595 + 2 NA Intergenic L1PA15|LINE|L1 54694 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 322-109 chr12 1903550 1903794 + 2 NA intron (NM_172364, intron 6 of 37).2 L1MA3|LINE|L1 14980 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 231-183 chr2 164394702 164394877 + 2 NA Intergenic L1MC4|LINE|L1 173706 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 308-150 chr14 72096424 72096673 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 163021 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 355-8 chr1 73456820 73457024 + 2 NA Intergenic Intergenic 150752 NR_110677 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 463-317 chrX 67134053 67134480 + 2 NA Intergenic Intergenic -409755 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 192-134 chr3 96131954 96132119 + 2 NA Intergenic Intergenic -227928 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 336-362 chr3 43844924 43845241 + 2 NA Intergenic L1PA16|LINE|L1 -153488 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 286-19 chr1 107898491 107898654 + 2 NA intron (NM_006113, intron 1 of 26) intron (NM_006113, intron 1 of 26) 1349 NR_107006 102465839 NR_107006 ENSG00000275455 MIR7852 hsa-mir-7852 microRNA 7852 ncRNA 337-407 chr4 104271242 104271554 + 2 NA Intergenic Intergenic -219567 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 299-18 chr1 108538932 108539165 + 2 NA Intergenic L1PA16|LINE|L1 -21052 NM_001010883 284611 Hs.200230 NM_001010883 ENSG00000162636 FAM102B SYM-3B family with sequence similarity 102 member B protein-coding 487-98 chr15 67951678 67952030 + 2 NA Intergenic L1MC1|LINE|L1 -102325 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 353-457 chr6 70449748 70450027 + 2 NA intron (NM_020819, intron 3 of 20) L1MA7|LINE|L1 -35929 NR_147708 105377849 Hs.669000 NR_147708 ENSG00000224349 LOC105377849 - uncharacterized LOC105377849 ncRNA 129-2 chr1 107078407 107078477 + 2 NA Intergenic Intergenic 21768 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 540-76 chr15 36337112 36337469 + 2 NA Intergenic AluSx3|SINE|Alu -242336 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 303-96 chr12 82584353 82584593 + 2 NA Intergenic Intergenic -102433 NM_001320321 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 332-158 chr14 89042290 89042556 + 2 NA Intergenic MADE2|DNA|TcMar-Mariner 217772 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 339-252 chr2 51922933 51923230 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -447567 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 501-53 chr12 76170918 76171347 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -86447 NM_001307924 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 181-2 chr1 30154855 30155012 + 2 NA Intergenic Intergenic -117321 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 294-290 chr3 41146466 41146708 + 2 NA Intergenic L1ME5|LINE|L1 -52918 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 240-159 chr15 68147021 68147230 + 2 NA intron (NM_016166, intron 6 of 13) L1ME4a|LINE|L1 58985 NM_001031733 91860 Hs.709550 NM_033429 ENSG00000129007 CALML4 NY-BR-20 calmodulin like 4 protein-coding 213-95 chr14 83363135 83363337 + 2 NA Intergenic Intergenic 720604 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 525-191 chr5 14998899 14999325 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -127334 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 389-281 chr5 12860615 12860980 + 2 NA Intergenic Intergenic 172089 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 223-56 chr11 103833552 103833721 + 2 NA Intergenic L1PA13|LINE|L1 -16270 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 197-155 chr4 112211160 112211325 + 2 NA Intergenic Intergenic -20545 NR_136622 55435 Hs.435991 NM_018569 ENSG00000138660 AP1AR 2C18|C4orf16|GBAR|PRO0971|gamma-BAR adaptor related protein complex 1 associated regulatory protein protein-coding 546-240 chr8 116120323 116120704 + 2 NA intron (NR_046215, intron 6 of 13) intron (NR_046215, intron 6 of 13) 204546 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 355-377 chr4 107379157 107379345 + 2 NA Intergenic Intergenic 340983 NM_005443 9061 Hs.368610 NM_005443 ENSG00000138801 PAPSS1 ATPSK1|PAPSS|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 262-316 chr4 67458517 67458745 + 2 NA Intergenic L1MC|LINE|L1 -36631 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 184-12 chr1 147157528 147157641 + 2 NA non-coding (NR_103871, exon 7 of 7) non-coding (NR_103871, exon 7 of 7) 14886 NR_103871 5565 Hs.50732 NM_005399 ENSG00000131791 PRKAB2 - protein kinase AMP-activated non-catalytic subunit beta 2 protein-coding 314-576 chr8 107718675 107718970 + 2 NA Intergenic L1MEc|LINE|L1 -220904 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 236-180 chr2 108882775 108882915 + 2 NA intron (NM_001351557, intron 12 of 12) intron (NM_001351557, intron 12 of 12) 96074 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 286-458 chr8 98689922 98690121 + 2 NA intron (NM_001256313, intron 4 of 8) L1PA17|LINE|L1 135650 NM_001256313 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 618-125 chr8 37589190 37589723 + 2 NA Intergenic Intergenic -68070 NR_121621 100507420 Hs.105962 NR_121620 LINC01605 LincDUSP long intergenic non-protein coding RNA 1605 ncRNA 289-143 chr14 85692351 85692544 + 2 NA Intergenic Intergenic 159098 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 324-55 chr10 44534875 44535147 + 2 NA Intergenic L1MDa|LINE|L1 -149914 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 306-494 chr8 43867162 43867324 + 2 NA Intergenic L1PA5|LINE|L1 574801 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 238-266 chr4 58785064 58785225 + 2 NA Intergenic MER31-int|LTR|ERV1 -199138 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 356-151 chr14 72587579 72587777 + 2 NA Intergenic LTR88b|LTR|Gypsy? 70858 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 349-241 chr2 21307530 21307768 + 2 NA Intergenic Intergenic 183663 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 235-19 chr1 165970190 165970369 + 2 NA Intergenic Intergenic 62358 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 306-469 chr7 51443537 51443698 + 2 NA Intergenic MER57B2|LTR|ERV1 -50361 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 247-80 chr12 27190635 27190864 + 2 NA Intergenic Intergenic -53537 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 453-233 chr6 130198515 130198819 + 2 NA intron (NM_001277185, intron 4 of 10) intron (NM_001277185, intron 4 of 10) 17218 NM_001277185 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 568-3 chr1 158164565 158165067 + 2 NA Intergenic L1MEd|LINE|L1 -15131 NM_001766 912 Hs.1799 NM_001766 ENSG00000158473 CD1D CD1A|R3|R3G1 CD1d molecule protein-coding 552-220 chr9 29322862 29323216 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -109438 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 618-123 chr8 29655528 29655977 + 2 NA Intergenic Intergenic 92357 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 276-294 chr3 64000045 64000280 + 2 NA 3' UTR (NM_000333, exon 13 of 13) 3' UTR (NM_000333, exon 13 of 13) -3860 NR_038286 100507062 Hs.152536 NR_038286 ENSG00000239653 PSMD6-AS2 - PSMD6 antisense RNA 2 ncRNA 299-102 chr12 43164993 43165194 + 2 NA Intergenic L1MEd|LINE|L1 9778 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 565-176 chr8 34855429 34855837 + 2 NA intron (NR_125746, intron 3 of 3) intron (NR_125746, intron 3 of 3) 71712 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 189-87 chr2 34961912 34962077 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 284437 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 201-253 chr9 13819841 13820037 + 2 NA Intergenic Intergenic -108032 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 294-309 chr3 130409472 130409643 + 2 NA intron (NM_001278298, intron 18 of 40) intron (NM_001278298, intron 18 of 40) 64041 NM_001278298 256076 Hs.205403 NM_153264 ENSG00000172752 COL6A5 COL29A1|VWA4 collagen type VI alpha 5 chain protein-coding 227-322 chr6 122712461 122712586 + 2 NA intron (NM_001270394, intron 6 of 7) intron (NM_001270394, intron 6 of 7) -36678 NM_001319042 2173 Hs.26770 NM_001446 ENSG00000164434 FABP7 B-FABP|BLBP|FABPB|MRG fatty acid binding protein 7 protein-coding 370-35 chr10 18313982 18314279 + 2 NA intron (NM_000724, intron 1 of 12) intron (NM_000724, intron 1 of 12) -26579 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 225-339 chr7 119118171 119118361 + 2 NA Intergenic L2c|LINE|L2 789109 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 431-289 chr8 40286594 40286858 + 2 NA Intergenic Intergenic 56637 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 451-50 chr13 26004419 26004772 + 2 NA intron (NM_016529, intron 35 of 36) L1MA8|LINE|L1 46465 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 433-275 chr8 60675384 60675756 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -3170 NM_017780 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 213-234 chr5 60978869 60979023 + 2 NA intron (NM_174889, intron 1 of 3) L1M1|LINE|L1 33741 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 468-313 chr8 79640205 79640578 + 2 NA intron (NM_007029, intron 2 of 4) L1MA8|LINE|L1 29274 NM_001199214 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 782-7 chr10 83646487 83647159 + 2 NA Intergenic Intergenic 30266 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 716-22 chr13 96644276 96644857 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 217337 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 359-222 chr2 31471060 31471260 + 2 NA Intergenic AluSx|SINE|Alu -56418 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 377-161 chr17 69542213 69542562 + 2 NA 3' UTR (NM_002758, exon 12 of 12) 3' UTR (NM_002758, exon 12 of 12) 40125 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 357-154 chr17 60443062 60443358 + 2 NA TTS (NM_001282476) TTS (NM_001282476) 20721 NM_181707 124773 Hs.129312 NM_181707 ENSG00000141371 C17orf64 - chromosome 17 open reading frame 64 protein-coding 313-405 chr4 132685952 132686253 + 2 NA Intergenic Intergenic 95013 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 349-429 chr5 133502931 133503183 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) -75351 NR_031621 100302134 NR_031621 ENSG00000221287 MIR1289-2 MIRN1289-2|hsa-mir-1289-2 microRNA 1289-2 ncRNA 273-250 chr2 219982889 219983070 + 2 NA Intergenic L1PA16|LINE|L1 -76414 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 368-77 chr11 38036123 38036327 + 2 NA Intergenic L2a|LINE|L2 97624 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 205-118 chr17 51690222 51690355 + 2 NA intron (NM_001082533, intron 5 of 9) L1MA8|LINE|L1 254861 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 211-325 chr9 85177859 85178053 + 2 NA Intergenic Intergenic 472055 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 305-342 chr3 25460776 25461009 + 2 NA intron (NM_001290217, intron 1 of 7) MIRc|SINE|MIR 2582 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 261-135 chr16 83100408 83100625 + 2 NA intron (NM_001220489, intron 3 of 12) intron (NM_001220489, intron 3 of 12) -110218 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 670-100 chr5 146836555 146836996 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 42010 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 369-351 chr6 39016578 39016850 + 2 NA intron (NM_001371, intron 90 of 91) intron (NM_001371, intron 90 of 91) -32067 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 248-242 chr3 51903962 51904177 + 2 NA promoter-TSS (NM_152397) promoter-TSS (NM_152397) -716 NM_152397 132141 Hs.671210 NM_152397 ENSG00000173389 IQCF1 - IQ motif containing F1 protein-coding 267-95 chr12 128918834 128919081 + 2 NA intron (NM_001366886, intron 6 of 11) intron (NM_001366886, intron 6 of 11) 65479 NR_159493 144423 Hs.655668 NM_144669 ENSG00000151948 GLT1D1 - glycosyltransferase 1 domain containing 1 protein-coding 222-82 chr12 40018215 40018435 + 2 NA intron (NM_052885, intron 3 of 9) MER58A|DNA|hAT-Charlie 87756 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 329-331 chr20 47038852 47039082 + 2 NA intron (NM_172110, intron 5 of 13) intron (NM_172110, intron 5 of 13) -128000 NR_037410 100500814 NR_037410 ENSG00000264901 MIR3616 mir-3616 microRNA 3616 ncRNA 403-208 chr3 192341607 192341941 + 2 NA intron (NM_004113, intron 3 of 5) intron (NM_004113, intron 3 of 5) 67275 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 182-118 chr4 6504439 6504545 + 2 NA intron (NM_001206994, intron 2 of 9) L1ME2|LINE|L1 -31878 NM_001363388 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 269-184 chr2 35550929 35551136 + 2 NA Intergenic Intergenic 79627 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 571-167 chr8 49390707 49391090 + 2 NA Intergenic MER9a1|LTR|ERVK 121282 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 267-245 chr22 43767069 43767266 + 2 NA intron (NM_198856, intron 2 of 29) intron (NM_198856, intron 2 of 29) 45138 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 393-26 chr1 208963740 208964108 + 2 NA Intergenic AluJr|SINE|Alu -8530 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 271-26 chr1 210288949 210289137 + 2 NA Intergenic MamRep434|DNA|TcMar-Tigger -39209 NM_001170564 55733 Hs.58650 NM_018194 ENSG00000054392 HHAT MART2|SKI1|Skn hedgehog acyltransferase protein-coding 197-121 chr21 23751871 23752055 + 2 NA Intergenic ERV3-16A3_LTR|LTR|ERVL -367128 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 364-445 chr8 87338094 87338437 + 2 NA intron (NM_173538, intron 8 of 10) L1MCa|LINE|L1 471850 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 475-189 chr3 137275138 137275472 + 2 NA Intergenic Intergenic 317322 NM_144717 53833 Hs.61232 NM_144717 ENSG00000174564 IL20RB DIRS1|FNDC6|IL-20R2 interleukin 20 receptor subunit beta protein-coding 364-163 chr16 83719564 83719887 + 2 NA intron (NM_001220489, intron 9 of 12) MIR|SINE|MIR 84251 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 277-400 chr8 31198890 31199155 + 2 NA Intergenic L1MD1|LINE|L1 -165666 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 332-122 chr12 37324039 37324244 + 2 NA Intergenic ALR/Alpha|Satellite|centr -992633 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 325-245 chr18 77485239 77485528 + 2 NA Intergenic L2|LINE|L2 235535 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 320-127 chr12 115225905 115226208 + 2 NA Intergenic Intergenic -541881 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 185-74 chr17 33767837 33767971 + 2 NA intron (NM_001094, intron 1 of 9) LTR106_Mam|LTR|LTR -234144 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 489-5 chr1 57360273 57360624 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 62664 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 117-44 chr8 13515953 13516025 + 2 NA intron (NM_001348082, intron 1 of 16) intron (NM_001348082, intron 1 of 16) -1138 NM_024767 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 474-278 chr8 24279612 24280027 + 2 NA Intergenic Intergenic -14221 NR_130709 10863 Hs.174030 NM_014265 ENSG00000042980 ADAM28 ADAM 28|MDC-L|MDCL|eMDC II|eMDCII ADAM metallopeptidase domain 28 protein-coding 254-188 chr2 80851202 80851403 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 537923 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 237-184 chr2 98254488 98254697 + 2 NA intron (NM_001345864, intron 14 of 21) intron (NM_001345864, intron 14 of 21) -91563 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 219-14 chr1 117414316 117414472 + 2 NA intron (NM_006699, intron 3 of 12) intron (NM_006699, intron 3 of 12) 46945 NM_006699 10905 Hs.435938 NM_006699 ENSG00000198162 MAN1A2 MAN1B mannosidase alpha class 1A member 2 protein-coding 568-182 chr7 16889605 16890139 + 2 NA Intergenic Intergenic -7889 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 455-256 chr7 53468267 53468565 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 343515 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 154 chr1 17754124 17754240 + 2 NA Intergenic L1ME2|LINE|L1 -1151 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 390-141 chr17 58880785 58881102 + 2 NA intron (NM_014906, intron 1 of 6) intron (NM_014906, intron 1 of 6) 125074 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 464-15 chr10 8917651 8918047 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 19860 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 511-173 chr3 78356038 78356409 + 2 NA Intergenic L2b|LINE|L2 -307260 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 481-151 chr2 116261428 116261901 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 917849 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 487-105 chr16 51955118 51955413 + 2 NA Intergenic L2a|LINE|L2 118670 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 253-128 chr14 52800628 52800771 + 2 NA Intergenic AluJr|SINE|Alu -9092 NM_198066 64841 Hs.478025 NM_198066 ENSG00000100522 GNPNAT1 GNA1|GNPNAT|Gpnat1 glucosamine-phosphate N-acetyltransferase 1 protein-coding 693-79 chr5 15518174 15518580 + 2 NA intron (NM_001278317, intron 1 of 3) LTR79|LTR|ERVL 16939 NM_001278317 23194 Hs.433057 NM_012304 ENSG00000183580 FBXL7 FBL6|FBL7 F-box and leucine rich repeat protein 7 protein-coding 227-246 chr4 38591698 38591882 + 2 NA Intergenic Intergenic 27787 NR_146991 105374411 NR_146991 LINC02278 - long intergenic non-protein coding RNA 2278 ncRNA 346-115 chr13 40568514 40568691 + 2 NA intron (NM_002015, intron 1 of 2) intron (NM_002015, intron 1 of 2) -87596 NR_024507 646982 Hs.287664 NR_024505 ENSG00000215483 LINC00598 lncFOXO1 long intergenic non-protein coding RNA 598 ncRNA 285-241 chr20 23832630 23832877 + 2 NA Intergenic MER31B|LTR|ERV1 -6024 NM_001322 1470 Hs.669305 NM_001322 ENSG00000170369 CST2 - cystatin SA protein-coding 367-116 chr13 82206641 82206881 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -979778 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 211-159 chr2 234602039 234602210 + 2 NA Intergenic Intergenic -80544 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 260-240 chr20 23100327 23100521 + 2 NA Intergenic Intergenic -14100 NM_012072 22918 Hs.97199 NM_012072 ENSG00000125810 CD93 C1QR1|C1qR(P)|C1qRP|CDw93|ECSM3|MXRA4|dJ737E23.1 CD93 molecule protein-coding 180-47 chr14 56225790 56225885 + 2 NA intron (NM_021255, intron 2 of 5) intron (NM_021255, intron 2 of 5) 107426 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 655-83 chr3 190291612 190292097 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 30592 NM_021101 9076 Hs.439060 NM_021101 ENSG00000163347 CLDN1 CLD1|ILVASC|SEMP1 claudin 1 protein-coding 121-42 chr3 96949724 96949797 + 2 NA intron (NM_001080448, intron 2 of 17) intron (NM_001080448, intron 2 of 17) 135166 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 619-76 chr20 46360499 46360893 + 2 NA intron (NM_173179, intron 1 of 9) AluSp|SINE|Alu 3729 NM_001281460 51006 Hs.593344 NM_015945 ENSG00000080189 SLC35C2 BA394O2.1|C20orf5|CGI-15|OVCOV1 solute carrier family 35 member C2 protein-coding 491-276 chr9 72740761 72741144 + 2 NA intron (NM_138691, intron 9 of 23) L1ME3|LINE|L1 133157 NR_121120 101927258 Hs.586433 NR_121120 ENSG00000236849 LINC01474 - long intergenic non-protein coding RNA 1474 ncRNA 260-104 chr12 58627941 58628172 + 2 NA intron (NR_120452, intron 1 of 7) intron (NR_120452, intron 1 of 7) 36354 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 381-71 chr11 29480718 29481043 + 2 NA Intergenic Intergenic -113533 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 450-220 chr4 38196251 38196545 + 2 NA Intergenic L2a|LINE|L2 76444 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 451-55 chr14 35499996 35500326 + 2 NA Intergenic L1MA3|LINE|L1 -34003 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 688-39 chr14 33240776 33241296 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) 302157 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 255-64 chr11 97859412 97859607 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -1161440 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 391-362 chr8 116798190 116798466 + 2 NA Intergenic L1MEc|LINE|L1 31804 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 287-354 chr6 76854759 76855037 + 2 NA Intergenic Intergenic -261275 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 411-25 chr10 34114141 34114416 + 2 NA intron (NM_001184789, intron 22 of 22) AluJr|SINE|Alu -341598 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 246-391 chr8 52247259 52247447 + 2 NA intron (NR_148195, intron 2 of 3) intron (NR_148195, intron 2 of 3) 1291 NR_148196 9705 Hs.655499 NM_014682 ENSG00000147488 ST18 NZF-3|NZF3|ZC2H2C3|ZC2HC10|ZNF387 ST18 C2H2C-type zinc finger transcription factor protein-coding 641-30 chr12 62005147 62005520 + 2 NA intron (NM_178539, intron 1 of 4) (ATGA)n|Simple_repeat|Simple_repeat 187506 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 358-154 chr16 89369632 89369899 + 2 NA intron (NR_045839, intron 2 of 9) L1MD2|LINE|L1 48632 NM_001242885 100287036 Hs.656995 NM_001242885 LOC100287036 - uncharacterized LOC100287036 protein-coding 305-497 chr7 9086783 9086989 + 2 NA Intergenic L1MC|LINE|L1 -547384 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 206-187 chr4 113895102 113895306 + 2 NA Intergenic LTR40A1|LTR|ERVL 84443 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 317-390 chr5 63688526 63688758 + 2 NA Intergenic PABL_B-int|LTR|ERV1 273650 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 211-218 chr4 159562938 159563125 + 2 NA Intergenic Intergenic 214753 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 188-43 chr12 92359217 92359391 + 2 NA Intergenic Intergenic -62227 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 185 chr1 36618727 36618879 + 2 NA Intergenic L1MB3|LINE|L1 -135489 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 315-220 chr2 3916875 3917107 + 2 NA Intergenic Intergenic 57041 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 217-238 chr3 162505414 162505590 + 2 NA Intergenic Intergenic 797799 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 147-25 chr14 83623877 83623974 + 2 NA Intergenic Intergenic 981293 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 225-116 chr16 73650679 73650830 + 2 NA Intergenic L1ME3B|LINE|L1 263949 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 490-251 chr6 135816775 135817261 + 2 NA Intergenic Intergenic -34683 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 304-558 chr9 113037692 113037989 + 2 NA TTS (NM_001282515) TTS (NM_001282515) 18884 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 405-215 chr3 189594318 189594559 + 2 NA Intergenic L1MA9|LINE|L1 -2308 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 726-2 chr1 102782336 102783029 + 2 NA Intergenic Intergenic 325814 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 188-170 chr5 124293959 124294099 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 144491 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 376-303 chr5 3904199 3904544 + 2 NA Intergenic Intergenic 308539 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 156-6 chr1 215480725 215480851 + 2 NA Intergenic Intergenic -86516 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 799-44 chr4 98057669 98058244 + 2 NA intron (NM_174952, intron 5 of 10) L1PA14|LINE|L1 85520 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 296-37 chr10 31678714 31678920 + 2 NA Intergenic Intergenic 230109 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 288-331 chr5 82535482 82535747 + 2 NA Intergenic Intergenic 256152 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 396-12 chr1 86991312 86991681 + 2 NA intron (NM_012262, intron 1 of 6) MER57B2|LTR|ERV1 76861 NM_012262 9653 Hs.743280 NM_012262 ENSG00000153936 HS2ST1 dJ604K5.2 heparan sulfate 2-O-sulfotransferase 1 protein-coding 222-322 chr6 46865531 46865740 + 2 NA intron (NM_001098518, intron 13 of 20) L2c|LINE|L2 -37836 NR_110658 101926962 Hs.680113 NR_110658 LOC101926962 - uncharacterized LOC101926962 ncRNA 369-62 chr11 79752928 79753216 + 2 NA Intergenic L1MA4A|LINE|L1 -312042 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 231-352 chr8 87666981 87667185 + 2 NA Intergenic Intergenic 206932 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 294-335 chr4 61783156 61783361 + 2 NA intron (NM_001371343, intron 8 of 23) intron (NM_001371343, intron 8 of 23) 378507 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 205-116 chr17 40714930 40715092 + 2 NA Intergenic Intergenic -11259 NM_019016 192666 Hs.87383 NM_019016 ENSG00000167916 KRT24 K24|KA24 keratin 24 protein-coding 312-404 chr5 17873467 17873679 + 2 NA intron (NR_134286, intron 5 of 7) MamRep1151|LTR?|LTR? 66299 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 252-251 chr3 18177273 18177489 + 2 NA intron (NR_161333, intron 4 of 4) L1ME2z|LINE|L1 214829 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 254-217 chr20 5670342 5670586 + 2 NA Intergenic Intergenic -59458 NM_019593 56261 Hs.636359 NM_019593 ENSG00000125772 GPCPD1 EDI3|GDE5|GDPD6|PREI4 glycerophosphocholine phosphodiesterase 1 protein-coding 352-40 chr10 36719079 36719378 + 2 NA Intergenic Intergenic -406629 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 276-97 chr12 10254998 10255180 + 2 NA intron (NM_001351060, intron 2 of 8) L1PREC2|LINE|L1 16128 NM_001351060 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 171-138 chr8 97341812 97341953 + 2 NA intron (NR_125390, intron 2 of 2) L1MEg|LINE|L1 -16383 NR_145760 109617016 NR_145760 ENSG00000207215 SNORD3H - small nucleolar RNA, C/D box 3H snoRNA 241-5 chr1 33588061 33588268 + 2 NA intron (NM_052896, intron 45 of 69) L1ME4a|LINE|L1 115519 NM_145238 7579 Hs.442705 NM_145238 ENSG00000121903 ZSCAN20 KOX29|ZFP-31|ZNF31|ZNF360 zinc finger and SCAN domain containing 20 protein-coding 318-43 chr1 221185499 221185694 + 2 NA Intergenic L1ME3G|LINE|L1 150700 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 412-233 chr4 61406064 61406389 + 2 NA intron (NM_001371343, intron 2 of 23) MIRb|SINE|MIR 204054 NM_001371342 505-143 chr2 64786344 64786814 + 2 NA Intergenic MIR|SINE|MIR 77052 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 199-166 chr3 133477348 133477498 + 2 NA intron (NR_135276, intron 1 of 4) intron (NR_135276, intron 1 of 4) 13723 NR_135276 85003 Hs.659202 NR_135276 ENSG00000249993 BFSP2-AS1 - BFSP2 antisense RNA 1 ncRNA 323-74 chr11 13457899 13458092 + 2 NA intron (NM_032320, intron 1 of 8) intron (NM_032320, intron 1 of 8) 5302 NM_032320 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 436-284 chr7 41917309 41917687 + 2 NA Intergenic Intergenic -214408 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 766-25 chr18 4801518 4802029 + 2 NA Intergenic Intergenic -279409 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 350-293 chr21 32210079 32210303 + 2 NA Intergenic MIR|SINE|MIR 68858 NM_018944 54069 Hs.190518 NM_018944 ENSG00000159055 MIS18A B28|C21orf45|C21orf46|FASP1|MIS18alpha|hMis18alpha MIS18 kinetochore protein A protein-coding 650-55 chr2 62363420 62363882 + 2 NA Intergenic AluSx4|SINE|Alu 142544 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 321-190 chr15 25747375 25747648 + 2 NA intron (NM_024490, intron 2 of 20) L1MEg|LINE|L1 101314 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 409-140 chr2 51692983 51693369 + 2 NA intron (NR_135237, intron 5 of 10) L1PA15|LINE|L1 660575 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 237-313 chr5 157408508 157408685 + 2 NA intron (NR_136204, intron 1 of 3) L1PA14|LINE|L1 -51423 NM_001099287 348938 Hs.4285 NM_001099287 ENSG00000172548 NIPAL4 ARCI6|ICHTHYIN|ICHYN NIPA like domain containing 4 protein-coding 323-351 chr3 181050509 181050794 + 2 NA Intergenic L1M4|LINE|L1 -6029 NR_075091 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 619-3 chr1 41756239 41756618 + 2 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 162494 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 360-60 chr10 132123801 132124055 + 2 NA intron (NM_001323089, intron 3 of 22) intron (NM_001323089, intron 3 of 22) 57982 NM_001105521 282973 Hs.106254 NM_194303 ENSG00000188385 JAKMIP3 C10orf14|C10orf39|Jamip3|NECC2|bA140A10.5 Janus kinase and microtubule interacting protein 3 protein-coding 399-194 chr22 26931909 26932286 + 2 NA Intergenic L1ME5|LINE|L1 28805 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 206-294 chrX 75193688 75193840 + 2 NA intron (NM_001363821, intron 3 of 9) L1PA13|LINE|L1 37395 NM_001363821 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 344-31 chr1 203953487 203953820 + 2 NA Intergenic L1MEc|LINE|L1 87611 NR_027902 284573 Hs.406979 NR_027902 ENSG00000176754 LINC00303 C1orf157|NCRNA00303 long intergenic non-protein coding RNA 303 ncRNA 304-293 chr20 7736308 7736585 + 2 NA Intergenic Intergenic 204012 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 328-392 chr4 35741712 35741971 + 2 NA Intergenic L1PA13|LINE|L1 502098 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 222-145 chr18 12567151 12567294 + 2 NA intron (NM_020148, intron 2 of 15) L1MCa|LINE|L1 89510 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 298-37 chr10 23660430 23660619 + 2 NA Intergenic LTR16A|LTR|ERVL -34203 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 304-241 chr2 16947210 16947469 + 2 NA Intergenic Intergenic -281505 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 317-363 chr4 110017583 110017850 + 2 NA Intergenic L1MEg|LINE|L1 104833 NM_001178130 1950 Hs.419815 NM_001963 ENSG00000138798 EGF HOMG4|URG epidermal growth factor protein-coding 354-413 chr6 157490266 157490512 + 2 NA intron (NM_024630, intron 1 of 8) intron (NM_024630, intron 1 of 8) -38743 NR_037463 100500899 NR_037463 ENSG00000266617 MIR3692 - microRNA 3692 ncRNA 278-144 chr16 25311021 25311290 + 2 NA Intergenic L1M2|LINE|L1 -53310 NM_001012981 342357 Hs.513451 NM_001012981 ENSG00000155592 ZKSCAN2 ZNF694|ZSCAN31|ZSCAN34 zinc finger with KRAB and SCAN domains 2 protein-coding 323-407 chr5 27421783 27422064 + 2 NA Intergenic L1MA3|LINE|L1 -50369 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 263-458 chrX 64966981 64967233 + 2 NA intron (NM_001178032, intron 1 of 4) intron (NM_001178032, intron 1 of 4) 9343 NR_045044 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 409-197 chr3 77496346 77496703 + 2 NA intron (NM_001290039, intron 5 of 26) intron (NM_001290039, intron 5 of 26) 398512 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 316-363 chr3 135778438 135778700 + 2 NA Intergenic Intergenic -187159 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 237-372 chr8 67906894 67907088 + 2 NA Intergenic MIR|SINE|MIR -45055 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 450-324 chr9 82639133 82639443 + 2 NA Intergenic L1MA4A|LINE|L1 423854 NM_152573 158158 Hs.129136 NM_152573 ENSG00000165105 RASEF RAB45 RAS and EF-hand domain containing protein-coding 353-50 chr10 25287960 25288225 + 2 NA intron (NM_020752, intron 2 of 10) MIR|SINE|MIR -111816 NR_027333 100128811 Hs.700407 NR_027333 ENSG00000233642 GPR158-AS1 - GPR158 antisense RNA 1 ncRNA 376-274 chr4 42947400 42947664 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 54266 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 330-142 chr13 100905035 100905265 + 2 NA intron (NR_047687, intron 2 of 7) MER4E1|LTR|ERV1 39214 NR_047015 100874161 Hs.143791 NR_047015 LINC00411 - long intergenic non-protein coding RNA 411 ncRNA 347-385 chr5 32740539 32740854 + 2 NA intron (NM_001364460, intron 2 of 6) MER33|DNA|hAT-Charlie 29375 NM_001204375 4883 Hs.13528 NM_000908 ENSG00000113389 NPR3 ANP-C|ANPR-C|ANPRC|C5orf23|GUCY2B|NPR-C|NPRC natriuretic peptide receptor 3 protein-coding 283-401 chr6 148455453 148455655 + 2 NA intron (NM_001346506, intron 5 of 20) intron (NM_001346506, intron 5 of 20) -52945 NM_001346508 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 403-240 chr5 23986403 23986702 + 2 NA intron (NR_131245, intron 4 of 4) L1M4|LINE|L1 35204 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 969-7 chr11 127921141 127921772 + 2 NA Intergenic L1MC3|LINE|L1 -287310 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 337-234 chr19 58252735 58252913 + 2 NA intron (NM_001320782, intron 6 of 6) AluSc5|SINE|Alu 23910 NM_001320787 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 327-523 chr9 79169427 79169747 + 2 NA Intergenic Intergenic -23921 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 222-103 chr13 86925527 86925710 + 2 NA intron (NR_132371, intron 1 of 1) intron (NR_132371, intron 1 of 1) 13698 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 217-253 chr4 54145719 54145933 + 2 NA Intergenic Intergenic 45663 NM_133267 170825 Hs.371899 NM_133267 ENSG00000180613 GSX2 GSH2 GS homeobox 2 protein-coding 230-322 chr6 71561703 71561863 + 2 NA Intergenic Intergenic 140756 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 293-46 chr10 105249047 105249226 + 2 NA intron (NM_014978, intron 22 of 26) intron (NM_014978, intron 22 of 26) 571197 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 163-28 chr12 13761765 13761867 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 218540 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 265-141 chr17 53234290 53234451 + 2 NA Intergenic L1MC3|LINE|L1 248865 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 413-307 chr8 98906055 98906358 + 2 NA intron (NM_001256312, intron 1 of 12) intron (NM_001256312, intron 1 of 12) 36404 NM_001256312 6788 Hs.492333 NM_006281 ENSG00000104375 STK3 KRS1|MST2 serine/threonine kinase 3 protein-coding 426-33 chr10 90604642 90604994 + 2 NA Intergenic Intergenic -64013 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 274-113 chr13 103876861 103877022 + 2 NA Intergenic Intergenic 451741 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 385-397 chr8 140193146 140193448 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -92762 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 194-84 chr19 37695356 37695483 + 2 NA TTS (NM_032689) TTS (NM_032689) -3104 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 353-120 chr12 119469893 119470157 + 2 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) -123749 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 188-41 chr12 68691376 68691497 + 2 NA intron (NM_020401, intron 4 of 27) intron (NM_020401, intron 4 of 27) 4458 NM_020401 57122 Hs.524574 NM_020401 ENSG00000111581 NUP107 NPHS11|NUP84|ODG6|ODG6; GAMOS7 nucleoporin 107 protein-coding 279-398 chr7 84766892 84767155 + 2 NA Intergenic L1MCa|LINE|L1 234547 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 266-97 chr13 29078804 29079027 + 2 NA intron (NM_001366651, intron 4 of 14) L1MB8|LINE|L1 54458 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 371-210 chr20 3085981 3086209 + 2 NA Intergenic MIR|SINE|MIR -1371 NM_000490 551 Hs.89648 NM_000490 ENSG00000101200 AVP ADH|ARVP|AVP-NPII|AVRP|VP arginine vasopressin protein-coding 309-449 chr5 104478998 104479175 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -620388 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 277-278 chr3 180346739 180346912 + 2 NA Intergenic Intergenic -67348 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 432-261 chr7 9385382 9385712 + 2 NA Intergenic L1M2|LINE|L1 -248723 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 259-342 chr6 55552546 55552784 + 2 NA intron (NR_109867, intron 1 of 3) L2b|LINE|L2 26549 NM_019036 54511 Hs.147054 NM_019036 ENSG00000146151 HMGCLL1 bA418P12.1|er-cHL 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 protein-coding 234-120 chr16 50420086 50420270 + 2 NA Intergenic L1MB4|LINE|L1 -25045 NR_146572 105371248 NR_146572 ENSG00000261092 LINC02178 - long intergenic non-protein coding RNA 2178 ncRNA 184-51 chr13 53438476 53438630 + 2 NA Intergenic Intergenic -286653 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 306-346 chr4 31854106 31854272 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -143190 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 270-17 chr1 193712793 193713005 + 2 NA Intergenic Intergenic 408154 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 509-172 chr4 46412258 46412602 + 2 NA Intergenic Intergenic -22302 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 364-351 chr5 92086034 92086242 + 2 NA Intergenic Intergenic -702821 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 301-460 chr8 114131028 114131249 + 2 NA Intergenic L1MA4A|LINE|L1 -694199 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 303-445 chr8 38590455 38590666 + 2 NA Intergenic L1ME4b|LINE|L1 10697 NR_003129 286140 Hs.512071 NR_003129 RNF5P1 - ring finger protein 5 pseudogene 1 pseudo 187-51 chr15 27158689 27158835 + 2 NA intron (NR_120343, intron 1 of 2) intron (NR_120343, intron 1 of 2) 2557 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 418-309 chrX 41858831 41859067 + 2 NA intron (NM_003688, intron 1 of 26) intron (NM_003688, intron 1 of 26) 64085 NM_001126055 8573 Hs.495984 NM_003688 ENSG00000147044 CASK CAGH39|CAMGUK|CMG|FGS4|LIN2|MICPCH|MRXSNA|TNRC8|hCASK calcium/calmodulin dependent serine protein kinase protein-coding 337-210 chr17 73941557 73941823 + 2 NA Intergenic Intergenic -113153 NR_027146 283982 Hs.464079 NM_182564 LINC00469 C17orf54 long intergenic non-protein coding RNA 469 ncRNA 307-444 chr7 19095934 19096182 + 2 NA Intergenic (AATTTGT)n|Simple_repeat|Simple_repeat 21578 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 354-69 chr10 130909765 130910054 + 2 NA Intergenic L1MB8|LINE|L1 52759 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 394-304 chr7 46182567 46182948 + 2 NA Intergenic Intergenic -261485 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 306-446 chr6 146346036 146346287 + 2 NA intron (NM_001278065, intron 4 of 9) intron (NM_001278065, intron 4 of 9) -197672 NM_006834 10981 Hs.287714 NM_006834 ENSG00000118508 RAB32 - RAB32, member RAS oncogene family protein-coding 265-381 chr8 14464557 14464730 + 2 NA intron (NM_001322881, intron 2 of 6) L1M4c|LINE|L1 388867 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 344-69 chr10 130275252 130275439 + 2 NA Intergenic Intergenic 138936 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 337-310 chr20 40751888 40752158 + 2 NA Intergenic Intergenic -37400 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 269-148 chr16 60304615 60304866 + 2 NA Intergenic Intergenic 55053 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 507-281 chrX 41048720 41049053 + 2 NA Intergenic AluSz|SINE|Alu -36559 NM_001039591 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 477-22 chr1 170742975 170743265 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 78989 NM_022716 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 355-227 chr2 14249965 14250289 + 2 NA intron (NR_103814, intron 2 of 3) FAM|SINE|Alu 150831 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 195-111 chr2 126283505 126283664 + 2 NA Intergenic Intergenic -165599 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 414-225 chr4 34899757 34900147 + 2 NA Intergenic L1MEc|LINE|L1 -630205 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 328-104 chr12 38005054 38005286 + 2 NA Intergenic ALR/Alpha|Satellite|centr -311604 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 557-58 chr15 95811146 95811554 + 2 NA Intergenic Intergenic 316491 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 389-336 chr7 11734718 11735044 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 97317 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 398-238 chr4 36386028 36386312 + 2 NA Intergenic LTR33A_|LTR|ERVL 40258 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 122-15 chr13 67892355 67892466 + 2 NA Intergenic Intergenic 520023 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 202-116 chr2 50916218 50916377 + 2 NA TTS (NM_001330081) TTS (NM_001330081) 115835 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 231-97 chr14 68640977 68641170 + 2 NA intron (NM_001321818, intron 10 of 10) L2c|LINE|L2 -12286 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 252-130 chr15 81021655 81021869 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 20839 NM_022566 59274 Hs.513071 NM_022566 ENSG00000140406 TLNRD1 MESDC1 talin rod domain containing 1 protein-coding 223-65 chr12 33756179 33756372 + 2 NA Intergenic Intergenic -266221 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 364-228 chr2 152367592 152367786 + 2 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 32515 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 238-422 chr9 99729817 99729996 + 2 NA intron (NR_109802, intron 2 of 6) LTR16A2|LTR|ERVL 89983 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 379-268 chr5 82581532 82581737 + 2 NA Intergenic L1PA10|LINE|L1 -258521 NR_039773 100616297 NR_039773 ENSG00000283359 MIR3977 - microRNA 3977 ncRNA 505-56 chr12 18831504 18831953 + 2 NA Intergenic L2c|LINE|L2 93609 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 310-246 chr2 89825072 89825314 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -187286 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 474-240 chr5 112030487 112030789 + 2 NA Intergenic Intergenic -53706 NM_001142475 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 340-84 chr11 92825504 92825750 + 2 NA intron (NM_001008781, intron 12 of 24) L2b|LINE|L2 90001 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 364-50 chr10 27976178 27976361 + 2 NA intron (NM_018076, intron 7 of 19) L1ME1|LINE|L1 5602 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 550-109 chr2 31671633 31671962 + 2 NA Intergenic L1PB3|LINE|L1 -90859 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 428-121 chr2 44914282 44914497 + 2 NA Intergenic Intergenic 24499 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 309-528 chr8 36582426 36582701 + 2 NA Intergenic Intergenic -201811 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 830-49 chr7 119168285 119168811 + 2 NA Intergenic L1MA4A|LINE|L1 738827 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 404-307 chr8 47444516 47444914 + 2 NA intron (NM_001080394, intron 8 of 19) L1M4c|LINE|L1 183777 NM_001080394 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 272-26 chr1 217969998 217970166 + 2 NA Intergenic L1PREC2|LINE|L1 -73423 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 226-55 chr11 78584130 78584328 + 2 NA Intergenic L1MEg|LINE|L1 -9365 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 202-125 chr2 107507857 107508012 + 2 NA Intergenic L1MC2|LINE|L1 -21485 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 338-284 chr2 178201849 178202093 + 2 NA intron (NM_001201480, intron 1 of 25) intron (NM_001201480, intron 1 of 25) 7459 NM_001201481 114880 Hs.318775 NM_032523 ENSG00000079156 OSBPL6 ORP6 oxysterol binding protein like 6 protein-coding 461-200 chr4 104561710 104562042 + 2 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -66982 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 437-37 chr11 21258785 21259124 + 2 NA intron (NM_201551, intron 14 of 18) intron (NM_201551, intron 14 of 18) 589368 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 408-76 chr12 24596041 24596393 + 2 NA Intergenic Intergenic -12049 NR_029451 144360 Hs.350668 NM_144667 ENSG00000197503 LINC00477 C12orf67|FAM191B long intergenic non-protein coding RNA 477 ncRNA 332-163 chr15 53090091 53090274 + 2 NA Intergenic Intergenic -26183 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 267-289 chr4 43464233 43464463 + 2 NA intron (NR_146993, intron 1 of 2) L1MA9|LINE|L1 28195 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 215-120 chr18 4740918 4741104 + 2 NA Intergenic L2a|LINE|L2 -285704 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 492-18 chr10 25891093 25891420 + 2 NA Intergenic Intergenic 42454 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 244-30 chr10 34061419 34061592 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -288825 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 283-28 chr1 184040535 184040805 + 2 NA Intergenic Intergenic -2942 NM_015101 23127 Hs.387995 NM_015101 ENSG00000198756 COLGALT2 C1orf17|ColGalT 2|GLT25D2 collagen beta(1-O)galactosyltransferase 2 protein-coding 319-395 chr5 6012145 6012322 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 325059 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 359-241 chr2 117420717 117420897 + 2 NA Intergenic Intergenic -393884 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 447-220 chr5 128053842 128054142 + 2 NA intron (NR_152812, intron 4 of 4) intron (NR_152812, intron 4 of 4) 29183 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 180-33 chr11 118818901 118819048 + 2 NA Intergenic Intergenic -27810 NM_004397 1656 Hs.408461 NM_004397 ENSG00000110367 DDX6 HLR2|P54|RCK DEAD-box helicase 6 protein-coding 278-450 chr9 34791484 34791668 + 2 NA Intergenic L2a|LINE|L2 47010 NR_024481 389715 Hs.713965 NM_001126494 FAM205BP C9orf144|C9orf144A|FAM205B transmembrane protein C9orf144B pseudogene pseudo 528-151 chr21 22010302 22010624 + 2 NA intron (NR_109959, intron 5 of 5) intron (NR_109959, intron 5 of 5) 87996 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 301-163 chr17 60580657 60580941 + 2 NA intron (NR_126009, intron 3 of 3) intron (NR_126009, intron 3 of 3) 16253 NR_126009 388406 Hs.368309 NR_126009 ENSG00000267772 LINC01999 - long intergenic non-protein coding RNA 1999 ncRNA 442-47 chr11 105871160 105871579 + 2 NA intron (NR_046356, intron 4 of 16) intron (NR_046356, intron 4 of 16) 150871 NM_032424 84437 Hs.266782 NM_032424 ENSG00000170903 MSANTD4 KIAA1826 Myb/SANT DNA binding domain containing 4 with coiled-coils protein-coding 127-70 chr6 51164072 51164158 + 2 NA Intergenic Intergenic 345244 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 314-91 chr11 34467348 34467513 + 2 NA intron (NM_001752, intron 10 of 12) intron (NM_001752, intron 10 of 12) 28496 NM_001752 847 Hs.502302 NM_001752 ENSG00000121691 CAT - catalase protein-coding 372-423 chr6 7872404 7872702 + 2 NA intron (NM_001718, intron 4 of 6) intron (NM_001718, intron 4 of 6) 37524 NM_001145549 81567 Hs.150837 NM_022085 ENSG00000239264 TXNDC5 ENDOPDI|ERP46|HCC-2|HCC2|PDIA15|STRF8|UNQ364 thioredoxin domain containing 5 protein-coding 593-2 chr1 41164345 41164777 + 2 NA intron (NM_001172218, intron 2 of 15) L2|LINE|L2 -1544 NM_001172221 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 355-287 chr20 55469503 55469817 + 2 NA Intergenic Intergenic -42463 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 183-16 chr10 66001531 66001650 + 2 NA intron (NM_001127384, intron 15 of 17) MIRb|SINE|MIR 430165 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 182-87 chr2 75265080 75265235 + 2 NA Intergenic L1MA3|LINE|L1 -65637 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 393-321 chr7 8143507 8143872 + 2 NA intron (NM_001350826, intron 9 of 14) intron (NM_001350826, intron 9 of 14) 118363 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 416-334 chr8 81336329 81336623 + 2 NA Intergenic Intergenic 55940 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 144-51 chr20 38328971 38329083 + 2 NA intron (NM_001725, intron 11 of 14) AluJb|SINE|Alu -17455 NM_004139 3929 Hs.154078 NM_004139 ENSG00000129988 LBP BPIFD2 lipopolysaccharide binding protein protein-coding 607-65 chr19 44035982 44036433 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 10828 NM_001129996 7673 Hs.279840 NM_013360 ENSG00000159885 ZNF222 - zinc finger protein 222 protein-coding 418-258 chr7 39286232 39286628 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 42704 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 130-68 chr5 152126918 152126993 + 2 NA intron (NR_109876, intron 1 of 2) intron (NR_109876, intron 1 of 2) 168057 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 342-427 chr5 135447526 135447775 + 2 NA promoter-TSS (NM_130848) promoter-TSS (NM_130848) -302 NM_130848 140947 Hs.152477 NM_130848 ENSG00000251380 DCANP1 C5orf20|DCNP1 dendritic cell associated nuclear protein protein-coding 469-159 chr20 55474346 55474772 + 2 NA Intergenic Intergenic -47362 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 269-25 chr1 188948924 188949135 + 2 NA Intergenic L1MDb|LINE|L1 1505401 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 274-315 chr5 101612627 101612778 + 2 NA Intergenic ERVL47-int|LTR|ERVL 683582 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 147-43 chr2 71288933 71289011 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -42783 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 235-327 chr7 46384111 46384262 + 2 NA Intergenic Intergenic 312936 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 452-148 chr2 204429556 204429800 + 2 NA Intergenic Intergenic -115797 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 317-232 chr2 82717393 82717683 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -139265 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 545-253 chr9 13296563 13296955 + 2 NA Intergenic L1M5|LINE|L1 -17046 NM_001330637 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 517-36 chr10 103322982 103323425 + 2 NA intron (NM_001011663, intron 8 of 9) intron (NM_001011663, intron 8 of 9) 27937 NM_001011663 84108 Hs.335808 NM_032154 ENSG00000156374 PCGF6 MBLR|RNF134 polycomb group ring finger 6 protein-coding 283-35 chr1 214732759 214733006 + 2 NA Intergenic Intergenic 129687 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 328-454 chr5 67485000 67485266 + 2 NA Intergenic Intergenic 161656 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 333-262 chr2 119456665 119456939 + 2 NA intron (NM_002980, intron 7 of 12) MLT1C|LTR|ERVL-MaLR -19652 NR_147847 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 415-27 chr10 5487871 5488272 + 2 NA Intergenic AluSx1|SINE|Alu 11499 NM_017422 51806 Hs.180142 NM_017422 ENSG00000178372 CALML5 CLSP calmodulin like 5 protein-coding 256-78 chr12 7454617 7454791 + 2 NA Intergenic L1M3e|LINE|L1 -10519 NM_174941 283316 Hs.631727 NM_174941 ENSG00000177675 CD163L1 CD163B|M160|SCARI2|WC1 CD163 molecule like 1 protein-coding 256-202 chr2 103481695 103481829 + 2 NA Intergenic L1MCb|LINE|L1 -497333 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 202-213 chr5 107065650 107065790 + 2 NA Intergenic L1ME4a|LINE|L1 -54706 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 200-27 chr10 5033224 5033392 + 2 NA Intergenic Intergenic -15275 NM_205845 1646 Hs.460260 NM_001354 ENSG00000151632 AKR1C2 AKR1C-pseudo|BABP|DD|DD-2|DD/BABP|DD2|DDH2|HAKRD|HBAB|MCDR2|SRXY8|TDD aldo-keto reductase family 1 member C2 protein-coding 332-374 chr4 53158974 53159282 + 2 NA intron (NM_152540, intron 4 of 8) L2c|LINE|L2 206933 NM_152540 152579 Hs.302287 NM_152540 ENSG00000184178 SCFD2 STXBP1L1 sec1 family domain containing 2 protein-coding 284-105 chr13 46520091 46520272 + 2 NA Intergenic Intergenic -32989 NM_001164213 23143 Hs.507971 NM_015116 ENSG00000136141 LRCH1 CHDC1|NP81 leucine rich repeats and calponin homology domain containing 1 protein-coding 317-371 chr5 6125239 6125436 + 2 NA Intergenic Intergenic 211955 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 384-311 chr6 2535950 2536189 + 2 NA Intergenic Intergenic -98431 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 227-169 chr2 75349139 75349294 + 2 NA Intergenic Intergenic -149696 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 316-480 chr6 45081451 45081742 + 2 NA intron (NM_001350327, intron 2 of 9) L2a|LINE|L2 116174 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 277-21 chr1 158703739 158703987 + 2 NA Intergenic Intergenic -3167 NM_001005279 81448 Hs.554489 NM_001005279 ENSG00000196171 OR6K2 OR1-17 olfactory receptor family 6 subfamily K member 2 protein-coding 534-76 chr14 63921323 63921710 + 2 NA intron (NM_015180, intron 2 of 114) L2c|LINE|L2 68512 NM_015180 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 256-385 chr7 46437729 46437925 + 2 NA Intergenic Intergenic 259295 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 524-163 chr4 32522836 32523184 + 2 NA Intergenic Intergenic 171972 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 212-243 chr4 106376658 106376783 + 2 NA Intergenic Intergenic -9285 NM_001195138 100507096 Hs.722750 NM_001195138 ENSG00000250298 GIMD1 - GIMAP family P-loop NTPase domain containing 1 protein-coding 289-131 chr14 21917401 21917644 + 2 NA Intergenic Intergenic -246505 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 712-56 chr21 35106924 35107548 + 2 NA Intergenic AluSz|SINE|Alu -57938 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 374-313 chr5 84266511 84266717 + 2 NA intron (NM_001278642, intron 1 of 9) intron (NM_001278642, intron 1 of 9) 118253 NM_001278642 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 288-439 chr8 82908485 82908736 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -3494 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 205-33 chr10 53136329 53136484 + 2 NA Intergenic Intergenic -364706 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 219-239 chr3 95463240 95463423 + 2 NA Intergenic MER72|LTR|ERV1 219862 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 295-47 chr10 55258382 55258551 + 2 NA intron (NM_001354404, intron 2 of 34) MER50|LTR|ERV1 -340576 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 234-91 chr14 42899921 42900069 + 2 NA Intergenic LTR26|LTR|ERV1 1293139 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 562-24 chr10 82107701 82108111 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 125014 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 663-22 chr11 115022376 115022833 + 2 NA Intergenic L1MB3|LINE|L1 -310973 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 243-420 chr7 54197891 54198039 + 2 NA Intergenic Intergenic -132732 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 174-50 chr16 60340778 60340876 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 18966 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 181-21 chr10 82093544 82093715 + 2 NA intron (NR_163253, intron 2 of 10) Charlie13b|DNA|hAT-Charlie 139291 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 269-161 chr18 21014587 21014844 + 2 NA intron (NM_005406, intron 13 of 32) intron (NM_005406, intron 13 of 32) 97098 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 439-303 chr9 27171269 27171705 + 2 NA intron (NM_001290077, intron 4 of 21) L2b|LINE|L2 62346 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 325-452 chr5 94426879 94427125 + 2 NA intron (NM_001145678, intron 14 of 20) MER58B|DNA|hAT-Charlie 191602 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 137-2 chr1 46064738 46064863 + 2 NA intron (NR_137329, intron 4 of 8) L1M5|LINE|L1 65873 NM_001328651 8503 Hs.655387 NM_003629 ENSG00000117461 PIK3R3 p55|p55-GAMMA|p55PIK phosphoinositide-3-kinase regulatory subunit 3 protein-coding 510-127 chr19 56454406 56454894 + 2 NA intron (NM_001321355, intron 4 of 5) L1MA5|LINE|L1 22695 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 391-9 chr1 74037169 74037472 + 2 NA intron (NM_001322315, intron 7 of 7) L1PA10|LINE|L1 160856 NM_001322315 127255 Hs.644625 NM_145258 ENSG00000162620 LRRIQ3 LRRC44 leucine rich repeats and IQ motif containing 3 protein-coding 273-373 chr5 163856800 163856974 + 2 NA Intergenic Intergenic 351268 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 358-514 chr9 37439900 37440126 + 2 NA 3' UTR (NM_014872, exon 2 of 2) 3' UTR (NM_014872, exon 2 of 2) 17317 NM_012203 9380 Hs.155742 NM_012203 ENSG00000137106 GRHPR GLXR|GLYD|PH2 glyoxylate and hydroxypyruvate reductase protein-coding 523-104 chr16 86728776 86729186 + 2 NA intron (NR_135182, intron 2 of 3) MLT1D|LTR|ERVL-MaLR 6890 NR_135183 102724344 Hs.585769 NR_135182 ENSG00000261175 LINC02188 - long intergenic non-protein coding RNA 2188 ncRNA 196-166 chr3 35716996 35717108 + 2 NA intron (NM_001267617, intron 11 of 18) intron (NM_001267617, intron 11 of 18) -27424 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 342-308 chr3 28026323 28026595 + 2 NA Intergenic L1MA9|LINE|L1 -192323 NR_132438 100996624 Hs.275746 NR_132438 ENSG00000229243 LINC01981 - long intergenic non-protein coding RNA 1981 ncRNA 240-365 chr5 163311064 163311245 + 2 NA Intergenic HAL1|LINE|L1 -126417 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 291-61 chr10 127288210 127288477 + 2 NA intron (NM_001290223, intron 29 of 51) L1MC5a|LINE|L1 -91752 NM_001039762 642938 Hs.613882 NM_001039762 ENSG00000188916 INSYN2A C10orf141|FAM196A|INSYN2 inhibitory synaptic factor 2A protein-coding 392-36 chr11 24039415 24039658 + 2 NA Intergenic Intergenic -457517 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 370-347 chr4 64409616 64409840 + 2 NA promoter-TSS (NM_001010874) promoter-TSS (NM_001010874) -268 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 251-202 chr20 37449878 37450120 + 2 NA Intergenic Intergenic 70304 NM_001317075 10904 Hs.472651 NM_006698 ENSG00000166619 BLCAP BC10 BLCAP apoptosis inducing factor protein-coding 233-240 chr3 115281111 115281311 + 2 NA Intergenic Intergenic -133923 NM_015642 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 374-201 chr2 133951597 133951888 + 2 NA Intergenic Intergenic -168193 NM_001371457 265-242 chr3 88257528 88257687 + 2 NA Intergenic Intergenic -80849 NM_001368166 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 271-179 chr18 40029949 40030133 + 2 NA Intergenic MIRb|SINE|MIR -36245 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 743-6 chr1 116788616 116789093 + 2 NA Intergenic L1PB1|LINE|L1 34424 NM_001767 914 Hs.523500 NM_001767 ENSG00000116824 CD2 LFA-2|SRBC|T11 CD2 molecule protein-coding 332-115 chr12 15090950 15091133 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -60882 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 424-125 chr2 23319606 23319931 + 2 NA Intergenic Intergenic -65411 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 301-405 chr6 147069002 147069198 + 2 NA intron (NR_034115, intron 5 of 10) intron (NR_034115, intron 5 of 10) -89825 NR_132442 106182249 Hs.575390 NR_132442 ENSG00000196634 LUADT1 - lung adenocarcinoma associated transcript 1 ncRNA 364-18 chr1 92909728 92909944 + 2 NA intron (NM_001006605, intron 1 of 4) intron (NM_001006605, intron 1 of 4) -32686 NM_001252271 388650 Hs.180946 NM_001006605 ENSG00000154511 DIPK1A FAM69A divergent protein kinase domain 1A protein-coding 384-24 chr1 194609940 194610310 + 2 NA Intergenic Intergenic 1305380 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 267-104 chr14 34406546 34406749 + 2 NA Intergenic L1MA8|LINE|L1 55593 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 355-276 chr2 239386247 239386597 + 2 NA intron (NM_006037, intron 1 of 26) intron (NM_006037, intron 1 of 26) 14527 NM_006037 9759 Hs.20516 NM_006037 ENSG00000068024 HDAC4 AHO3|BDMR|HA6116|HD4|HDAC-4|HDAC-A|HDACA histone deacetylase 4 protein-coding 567-166 chr7 40387744 40388180 + 2 NA intron (NM_024728, intron 9 of 14) MIRb|SINE|MIR 252986 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 690-68 chr21 23645412 23645961 + 2 NA Intergenic MER52D|LTR|ERV1 -260851 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 503-99 chr14 66800880 66801273 + 2 NA intron (NM_001024218, intron 3 of 21) L1MA2|LINE|L1 293669 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 467-157 chr20 48653699 48654026 + 2 NA intron (NM_020820, intron 19 of 39) MIRb|SINE|MIR 174137 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 184-170 chr8 91475023 91475161 + 2 NA Intergenic L1MEc|LINE|L1 225773 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 406-189 chr3 68492610 68492853 + 2 NA intron (NM_001252216, intron 3 of 4) (TTC)n|Simple_repeat|Simple_repeat -7906 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 230-374 chr8 79041215 79041381 + 2 NA Intergenic HAL1|LINE|L1 203769 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 352-245 chr2 98276185 98276500 + 2 NA intron (NM_001345864, intron 16 of 21) intron (NM_001345864, intron 16 of 21) -69813 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 319-147 chr14 72860316 72860522 + 2 NA intron (NM_001280542, intron 1 of 10) AluJo|SINE|Alu 32230 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 478-171 chr21 31619909 31620206 + 2 NA Intergenic L1MB3|LINE|L1 -39565 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 349-10 chr1 42597886 42598156 + 2 NA intron (NM_001080850, intron 10 of 16) AluJr|SINE|Alu -60402 NM_006347 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 465-138 chr2 152511966 152512277 + 2 NA intron (NM_052905, intron 1 of 25) intron (NM_052905, intron 1 of 25) 176947 NM_052905 114793 Hs.654630 NM_052905 ENSG00000157827 FMNL2 FHOD2 formin like 2 protein-coding 439-159 chr2 238766769 238767059 + 2 NA Intergenic L1MEc|LINE|L1 80993 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 274-9 chr1 83030535 83030721 + 2 NA intron (NR_147074, intron 5 of 10) intron (NR_147074, intron 5 of 10) -44420 NR_110633 101927498 NR_110632 ENSG00000236268 LINC01361 - long intergenic non-protein coding RNA 1361 ncRNA 544-43 chr11 39003733 39004241 + 2 NA Intergenic L1MEd|LINE|L1 355129 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 496-128 chr2 15771579 15771930 + 2 NA Intergenic Intergenic 80972 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 318-150 chr12 118954503 118954694 + 2 NA Intergenic Intergenic -26943 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 371-392 chr8 120891657 120891974 + 2 NA Intergenic MLT2F|LTR|ERVL -79769 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 511-53 chr12 114592888 114593276 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 91093 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 634-105 chr3 87778608 87778952 + 2 NA Intergenic L1MB8|LINE|L1 -13926 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 203-50 chr13 44568191 44568356 + 2 NA intron (NM_183422, intron 1 of 2) L1MEg|LINE|L1 -7623 NR_038381 641467 Hs.624196 NR_038381 ENSG00000278156 TSC22D1-AS1 - TSC22D1 antisense RNA 1 ncRNA 564-168 chr6 5764797 5765179 + 2 NA intron (NM_006567, intron 6 of 6) intron (NM_006567, intron 6 of 6) -69716 NR_110842 101927950 Hs.571136 NR_110842 ENSG00000270174 LOC101927950 - uncharacterized LOC101927950 ncRNA 600-115 chr7 41584890 41585389 + 2 NA Intergenic Intergenic -108780 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 407-252 chr5 112358731 112358945 + 2 NA intron (NM_001347887, intron 1 of 23) L1ME3|LINE|L1 60439 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 807-5 chr1 219725790 219726452 + 2 NA Intergenic L1M2c|LINE|L1 -112976 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 332-448 chr6 24127690 24127971 + 2 NA intron (NM_080723, intron 1 of 3) intron (NM_080723, intron 1 of 3) 1615 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 306-429 chr6 52630729 52630981 + 2 NA Intergenic Intergenic -33546 NR_024405 730101 Hs.7921 NR_024403 ENSG00000216775 LOC730101 - uncharacterized LOC730101 ncRNA 202-259 chr8 123435018 123435158 + 2 NA intron (NM_018024, intron 3 of 5) MIRc|SINE|MIR 18314 NM_018024 55093 Hs.18029 NM_018024 ENSG00000156795 WDYHV1 C8orf32 WDYHV motif containing 1 protein-coding 235-271 chr4 171741277 171741461 + 2 NA Intergenic Intergenic -72035 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 408-242 chr4 89279895 89280128 + 2 NA intron (NM_198281, intron 1 of 1) L2|LINE|L2 27789 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 317-39 chr10 5332450 5332637 + 2 NA Intergenic L1MA6|LINE|L1 -32423 NM_053049 114131 Hs.511775 NM_053049 ENSG00000178473 UCN3 SCP|SPC|UCNIII urocortin 3 protein-coding 367-347 chr5 20479718 20480059 + 2 NA intron (NM_001349558, intron 1 of 15) L1MA3|LINE|L1 95825 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 282-9 chr1 90227782 90227980 + 2 NA Intergenic L1MEf|LINE|L1 232771 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 551-5 chr1 79563471 79563941 + 2 NA Intergenic L1M1|LINE|L1 -556976 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 334-371 chr4 11322343 11322631 + 2 NA Intergenic L1MB7|LINE|L1 -46340 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 262-104 chr12 98116971 98117214 + 2 NA Intergenic MIRb|SINE|MIR -121644 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 354-149 chr15 24670603 24670922 + 2 NA Intergenic L2a|LINE|L2 -4632 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 282-98 chr12 56862886 56863031 + 2 NA Intergenic MER101B|LTR|ERV1 71450 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 475-261 chr7 43444402 43444850 + 2 NA exon (NM_015052, exon 11 of 30) exon (NM_015052, exon 11 of 30) 77916 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 459-336 chrX 98734396 98734746 + 2 NA Intergenic Intergenic -1170036 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 434-37 chr10 75851788 75852049 + 2 NA intron (NM_032024, intron 1 of 5) intron (NM_032024, intron 1 of 5) 69157 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 343-330 chr3 28460903 28461169 + 2 NA intron (NM_001324170, intron 3 of 6) intron (NM_001324170, intron 3 of 6) 111887 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 296-159 chr15 76555113 76555335 + 2 NA intron (NR_148227, intron 23 of 32) L1PA15|LINE|L1 -31423 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 360-334 chr4 100335330 100335562 + 2 NA Intergenic L1PA14|LINE|L1 59801 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 652-33 chr12 118997029 118997487 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 15717 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 205-182 chr3 83162649 83162819 + 2 NA Intergenic Intergenic 1176592 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 384-19 chr1 169628798 169629165 + 2 NA intron (NM_003005, intron 1 of 16) intron (NM_003005, intron 1 of 16) 1143 NM_003005 6403 Hs.73800 NM_003005 ENSG00000174175 SELP CD62|CD62P|GMP140|GRMP|LECAM3|PADGEM|PSEL selectin P protein-coding 430-214 chr4 76531087 76531422 + 2 NA intron (NM_020859, intron 1 of 10) intron (NM_020859, intron 1 of 10) -42314 NR_039654 100616299 NR_039654 ENSG00000263445 MIR4450 mir-4450 microRNA 4450 ncRNA 229-39 chr10 84317774 84317937 + 2 NA Intergenic L1M5|LINE|L1 -10734 NM_018999 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 349-430 chr5 142947241 142947493 + 2 NA intron (NR_146198, intron 11 of 22) intron (NR_146198, intron 11 of 22) -78457 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 163-59 chr18 39863730 39863860 + 2 NA intron (NR_151703, intron 1 of 8) intron (NR_151703, intron 1 of 8) 22086 NR_151703 105372079 NR_151703 ENSG00000283503 LINC01902 - long intergenic non-protein coding RNA 1902 ncRNA 313-18 chr1 106867616 106867831 + 2 NA Intergenic Intergenic 49484 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 310-433 chr5 158016075 158016335 + 2 NA Intergenic Intergenic -157060 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 336-24 chr1 79551183 79551461 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -544592 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 359-113 chr12 33402961 33403229 + 2 NA intron (NM_198992, intron 3 of 6) intron (NM_198992, intron 3 of 6) 36724 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 283-111 chr12 129896590 129896816 + 2 NA intron (NM_133448, intron 1 of 8) intron (NM_133448, intron 1 of 8) 7322 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 293-85 chr12 64577336 64577610 + 2 NA Intergenic AluSx1|SINE|Alu -33022 NM_178169 283349 Hs.643605 NM_178169 ENSG00000153179 RASSF3 RASSF5 Ras association domain family member 3 protein-coding 277-151 chr17 55818720 55818989 + 2 NA intron (NM_001330378, intron 5 of 5) intron (NM_001330378, intron 5 of 5) 67749 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 240-349 chr5 38191570 38191752 + 2 NA Intergenic MIRb|SINE|MIR 43181 NR_134272 101929745 Hs.374715 NR_134272 ENSG00000248461 LINC02119 - long intergenic non-protein coding RNA 2119 ncRNA 246-276 chr3 137750178 137750339 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -14057 NM_004189 8403 Hs.248184 NM_004189 ENSG00000168875 SOX14 SOX28 SRY-box transcription factor 14 protein-coding 504-44 chr11 98851054 98851425 + 2 NA Intergenic L1M4c|LINE|L1 -169710 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 379-286 chr6 40186231 40186510 + 2 NA Intergenic LTR8B|LTR|ERV1 169636 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 384-270 chr4 92462736 92462943 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 158440 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 432-109 chr18 71353979 71354324 + 2 NA Intergenic Intergenic 224805 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 435-78 chr14 52366095 52366460 + 2 NA Intergenic Intergenic 51965 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 211 chr1 22963797 22963938 + 2 NA intron (NM_001289974, intron 3 of 7) intron (NM_001289974, intron 3 of 7) 8999 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 250-415 chr8 23822599 23822798 + 2 NA Intergenic Intergenic 32108 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 330-536 chr8 136124714 136125026 + 2 NA Intergenic MIRb|SINE|MIR -405928 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 234-36 chr10 57300677 57300818 + 2 NA Intergenic L1MD1|LINE|L1 3812 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 247-122 chr14 88690305 88690474 + 2 NA intron (NM_183387, intron 17 of 42) L2a|LINE|L2 95969 NM_207662 79882 Hs.684046 NM_024824 ENSG00000100722 ZC3H14 MRT56|MSUT-2|NY-REN-37|SUT2|UKp68 zinc finger CCCH-type containing 14 protein-coding 154-17 chr11 60663829 60663938 + 2 NA intron (NR_026946, intron 6 of 6) intron (NR_026946, intron 6 of 6) -35729 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 388-214 chr3 4330619 4330903 + 2 NA Intergenic LTR49-int|LTR|ERV1 27457 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 356-461 chr7 111479085 111479343 + 2 NA intron (NM_001350961, intron 4 of 7) L1MEg|LINE|L1 83077 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 207-40 chr10 79017841 79018043 + 2 NA intron (NR_015429, intron 3 of 7) MLT1G|LTR|ERVL-MaLR 49506 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 328-487 chr6 15787124 15787341 + 2 NA Intergenic L1MA7|LINE|L1 -124174 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 303-431 chr7 99197880 99198123 + 2 NA intron (NM_001145715, intron 2 of 9) L1MB7|LINE|L1 9488 NM_001145715 402569 Hs.253050 NM_001145715 ENSG00000185467 KPNA7 IPOA8 karyopherin subunit alpha 7 protein-coding 235-332 chr7 67476830 67476999 + 2 NA Intergenic AluJo|SINE|Alu 140938 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 593-130 chr7 3727835 3728314 + 2 NA intron (NM_152744, intron 4 of 44) L1MC3|LINE|L1 -401611 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 270-40 chr10 75252800 75253063 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -16974 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 288-399 chr7 38137393 38137620 + 2 NA Intergenic L1ME1|LINE|L1 -40739 NM_001363339 83930 Hs.309753 NM_032016 ENSG00000010270 STARD3NL MENTHO STARD3 N-terminal like protein-coding 321-281 chr2 40177060 40177328 + 2 NA intron (NM_001351483, intron 3 of 8) intron (NM_001351483, intron 3 of 8) 253110 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 170-18 chr10 19002155 19002260 + 2 NA Intergenic Intergenic -46594 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 393-89 chr14 26485065 26485359 + 2 NA intron (NM_001366393, intron 2 of 4) L2a|LINE|L2 68218 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 213-33 chr10 32804670 32804854 + 2 NA intron (NM_001321115, intron 30 of 43) MIR3|SINE|MIR 96710 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 259-330 chr5 153464669 153464863 + 2 NA Intergenic MER41-int|LTR|ERV1 -25758 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 241-307 chr5 82903564 82903699 + 2 NA Intergenic L1MC1|LINE|L1 -43795 NR_105016 102546175 NR_105016 ENSG00000281327 LINC01338 - long intergenic non-protein coding RNA 1338 ncRNA 580-183 chr7 54707307 54707791 + 2 NA Intergenic MER4-int|LTR|ERV1 51662 NM_014302 23480 Hs.488282 NM_014302 ENSG00000132432 SEC61G SSS1 SEC61 translocon gamma subunit protein-coding 437-55 chr12 90235876 90236129 + 2 NA Intergenic MLT2B3|LTR|ERVL -57316 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 298-206 chr2 42888266 42888540 + 2 NA Intergenic Intergenic -95820 NM_012205 23498 Hs.368805 NM_012205 ENSG00000162882 HAAO 3-HAO|HAO|VCRL1|h3HAO 3-hydroxyanthranilate 3,4-dioxygenase protein-coding 203-127 chr2 199880320 199880439 + 2 NA Intergenic AluJr|SINE|Alu -29206 NM_001363886 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 297-164 chr16 78868777 78868986 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 731856 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 280-174 chr18 67854716 67854898 + 2 NA intron (NR_033921, intron 3 of 4) L1MB5|LINE|L1 -39985 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 459-170 chr22 25138438 25138836 + 2 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -25945 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 621-62 chr2 186373905 186374407 + 2 NA Intergenic Intergenic -112104 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 325-156 chr14 30859605 30859830 + 2 NA Intergenic Intergenic -14818 NM_001135058 1690 Hs.21016 NM_004086 ENSG00000100473 COCH COCH-5B2|COCH5B2|DFNA9|DFNB110 cochlin protein-coding 346-323 chr3 114419159 114419426 + 2 NA intron (NM_001348805, intron 7 of 10) intron (NM_001348805, intron 7 of 10) -34301 NR_121661 101929754 Hs.614195 NR_121661 ENSG00000242290 ZBTB20-AS5 - ZBTB20 antisense RNA 5 ncRNA 151-6 chr1 187001091 187001240 + 2 NA Intergenic Intergenic -91677 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 603-179 chrX 98879217 98879634 + 2 NA Intergenic Intergenic -1314890 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 308-178 chr17 9508093 9508284 + 2 NA intron (NR_033656, intron 2 of 5) L1MA5A|LINE|L1 67632 NM_004853 9482 Hs.431109 NM_004853 ENSG00000170310 STX8 CARB syntaxin 8 protein-coding 226-239 chr3 157638365 157638555 + 2 NA Intergenic MIRb|SINE|MIR 95116 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 555 chr1 48338164 48338517 + 2 NA intron (NM_001286238, intron 11 of 12) L1MEg1|LINE|L1 115624 NM_001135181 200010 Hs.37890 NM_001011547 ENSG00000117834 SLC5A9 SGLT4 solute carrier family 5 member 9 protein-coding 204-203 chr3 104410996 104411171 + 2 NA Intergenic Intergenic -886967 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 251-199 chr20 13457464 13457646 + 2 NA intron (NM_017714, intron 11 of 13) intron (NM_017714, intron 11 of 13) 181377 NM_017714 55617 Hs.348297 NM_017714 ENSG00000089123 TASP1 C20orf13|dJ585I14.2 taspase 1 protein-coding 263-52 chr10 65836084 65836224 + 2 NA Intergenic Intergenic 264729 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 687-20 chr10 121312141 121312584 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 218952 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 342-167 chr15 88760725 88760920 + 2 NA Intergenic Intergenic -42614 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 299-116 chr12 133068916 133069136 + 2 NA Intergenic Intergenic -11177 NM_001300778 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 470-118 chr2 21725102 21725467 + 2 NA Intergenic Intergenic -14632 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 332-28 chr1 177092482 177092793 + 2 NA intron (NM_207108, intron 1 of 21) L1MD3|LINE|L1 -63192 NR_030163 574441 NR_030163 ENSG00000202609 MIR488 MIRN488|hsa-mir-488|mir-488 microRNA 488 ncRNA 579-190 chrX 151443808 151444374 + 2 NA Intergenic L1MD|LINE|L1 46906 NM_001017980 203547 Hs.58633 NM_001017980 ENSG00000160131 VMA21 MEAX|XMEA vacuolar ATPase assembly factor VMA21 protein-coding 220-34 chr1 232337956 232338100 + 2 NA Intergenic Intergenic 177580 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 427-121 chr2 98360486 98360852 + 2 NA intron (NM_001079878, intron 1 of 6) intron (NM_001079878, intron 1 of 6) 14213 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 325-261 chr2 47499566 47499852 + 2 NA Intergenic LOR1a|LTR|ERV1 -27828 NR_120602 644093 Hs.734158 NR_120602 ENSG00000235760 HCG2040054 - uncharacterized LOC644093 ncRNA 219-7 chr1 64671775 64671948 + 2 NA intron (NM_020925, intron 17 of 26) intron (NM_020925, intron 17 of 26) -73112 NM_001366165 55225 Hs.591443 NM_018211 ENSG00000162437 RAVER2 - ribonucleoprotein, PTB binding 2 protein-coding 585-93 chr3 4593375 4593740 + 2 NA intron (NM_001168272, intron 4 of 60) intron (NM_001168272, intron 4 of 60) 100209 NM_002222 3708 Hs.567295 NM_002222 ENSG00000150995 ITPR1 ACV|CLA4|INSP3R1|IP3R|IP3R1|PPP1R94|SCA15|SCA16|SCA29 inositol 1,4,5-trisphosphate receptor type 1 protein-coding 278-220 chr2 101188712 101188923 + 2 NA Intergenic Intergenic 37157 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 436-183 chr3 38716029 38716366 + 2 NA intron (NM_006514, intron 20 of 26) L1MA9|LINE|L1 -66510 NM_001160160 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 516-161 chr22 27738269 27738765 + 2 NA Intergenic L1MB7|LINE|L1 63239 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 199-188 chr4 119647178 119647320 + 2 NA Intergenic Intergenic -18445 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 316-132 chr12 43181255 43181456 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 26040 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 247-19 chr1 166359950 166360128 + 2 NA Intergenic L2b|LINE|L2 130000 NR_146890 105371590 Hs.575926 NR_146890 ENSG00000234142 LINC01675 - long intergenic non-protein coding RNA 1675 ncRNA 452-209 chr5 31064319 31064731 + 2 NA Intergenic Intergenic -129161 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 128-36 chr20 18893321 18893405 + 2 NA Intergenic L1MC1|LINE|L1 -63160 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 318-62 chr10 45027308 45027476 + 2 NA Intergenic Intergenic 26469 NM_006963 7570 Hs.462693 NM_006963 ENSG00000165512 ZNF22 HKR-T1|KOX15|ZNF422|Zfp422 zinc finger protein 22 protein-coding 536-52 chr11 91907753 91908161 + 2 NA Intergenic Intergenic -317077 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 416-6 chr1 41317349 41317710 + 2 NA Intergenic LTR32|LTR|ERVL -43905 NM_001291281 100132074 Hs.559677 NM_001291281 FOXO6 - forkhead box O6 protein-coding 419-24 chr1 233582692 233583062 + 2 NA Intergenic L1ME3E|LINE|L1 -31229 NM_002245 3775 Hs.208544 NM_002245 ENSG00000135750 KCNK1 DPK|HOHO|K2P1|K2p1.1|KCNO1|TWIK-1|TWIK1 potassium two pore domain channel subfamily K member 1 protein-coding 255-18 chr1 241279135 241279341 + 2 NA intron (NM_001282778, intron 2 of 16) intron (NM_001282778, intron 2 of 16) 76588 NM_001350116 6000 Hs.655739 NM_002924 ENSG00000182901 RGS7 - regulator of G protein signaling 7 protein-coding 516-140 chr2 188868559 188868948 + 2 NA Intergenic L1MB8|LINE|L1 -78630 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 334-430 chr5 101862912 101863165 + 2 NA Intergenic L1PA13|LINE|L1 433246 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 275 chr1 30550253 30550513 + 2 NA Intergenic MER52D|LTR|ERV1 -168389 NR_034182 100129196 Hs.659751 NR_034182 ENSG00000186056 MATN1-AS1 - MATN1 antisense RNA 1 ncRNA 175-59 chr16 56048248 56048395 + 2 NA Intergenic L1MB8|LINE|L1 -92290 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 248-270 chr4 31865254 31865410 + 2 NA Intergenic MER34A|LTR|ERV1 -132047 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 254-216 chr20 1090453 1090687 + 2 NA Intergenic Intergenic -22659 NM_178578 9491 Hs.471917 NM_006814 ENSG00000125818 PSMF1 PI31 proteasome inhibitor subunit 1 protein-coding 365-137 chr16 25209253 25209604 + 2 NA Intergenic L1M5|LINE|L1 -7519 NM_001169 343 Hs.176658 NM_001169 ENSG00000103375 AQP8 AQP-8 aquaporin 8 protein-coding 366-152 chr16 48881670 48881886 + 2 NA Intergenic Intergenic -271598 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 249-65 chr10 129711692 129711863 + 2 NA intron (NM_002412, intron 3 of 4) intron (NM_002412, intron 3 of 4) 131597 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 246-75 chr11 88227846 88228066 + 2 NA Intergenic L1PB4|LINE|L1 51454 NR_036124 100423040 NR_036124 ENSG00000266581 MIR3166 - microRNA 3166 ncRNA 246-329 chr5 83826900 83827042 + 2 NA Intergenic Intergenic -106116 NM_001884 1404 Hs.2799 NM_001884 ENSG00000145681 HAPLN1 CRT1|CRTL1 hyaluronan and proteoglycan link protein 1 protein-coding 334-195 chr16 62560534 62560716 + 2 NA Intergenic Intergenic -524187 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 337-593 chr9 132821484 132821814 + 2 NA intron (NM_001317959, intron 11 of 14) intron (NM_001317959, intron 11 of 14) -56695 NM_001316898 11092 Hs.62595 NM_018956 ENSG00000165698 SPACA9 C9orf9|Mast sperm acrosome associated 9 protein-coding 639-76 chr22 25766225 25766573 + 2 NA intron (NM_001318245, intron 3 of 43) intron (NM_001318245, intron 3 of 43) 24211 NM_032608 84700 Hs.417959 NM_032608 ENSG00000133454 MYO18B KFS4 myosin XVIIIB protein-coding 378-268 chr22 28416526 28416809 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -43202 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 364-230 chr2 158076212 158076467 + 2 NA intron (NM_001135098, intron 2 of 8) L1MA2|LINE|L1 -25531 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 249-163 chr18 24922586 24922791 + 2 NA Intergenic LTR33A|LTR|ERVL 65291 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 327-138 chr13 76444363 76444662 + 2 NA Intergenic L1P4|LINE|L1 441893 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 362-229 chr2 146612881 146613167 + 2 NA Intergenic L1MA9|LINE|L1 25967 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 220-159 chr2 51665236 51665354 + 2 NA intron (NR_135237, intron 5 of 10) LTR8B|LTR|ERV1 632694 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 304-507 chr8 59867309 59867605 + 2 NA Intergenic Intergenic 413943 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 668-43 chr19 2161184 2161626 + 2 NA Intergenic AluSq|SINE|Alu -2528 NM_032482 84444 Hs.713641 NM_032482 ENSG00000104885 DOT1L DOT1|KMT4 DOT1 like histone lysine methyltransferase protein-coding 633-117 chr7 61774345 61774818 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1529475 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 215-299 chr7 54491401 54491548 + 2 NA Intergenic Intergenic -50851 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 453-202 chr5 31009251 31009556 + 2 NA Intergenic L2c|LINE|L2 -184283 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 216-101 chr14 72026693 72026863 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 93251 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 210-13 chr1 118528875 118529056 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -343737 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 546-3 chr1 62214186 62214670 + 2 NA Intergenic AluSz|SINE|Alu 19579 NM_019079 54596 Hs.685462 NM_019079 ENSG00000240563 L1TD1 ECAT11 LINE1 type transposase domain containing 1 protein-coding 403-265 chr6 38565532 38565863 + 2 NA intron (NM_001172418, intron 5 of 10) L1M5|LINE|L1 30370 NM_152733 114781 Hs.603858 NM_052893 ENSG00000183826 BTBD9 dJ322I12.1 BTB domain containing 9 protein-coding 352-437 chr5 161062604 161062862 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -124107 NR_027111 285629 Hs.554279 NR_027111 ENSG00000253417 LINC02159 - long intergenic non-protein coding RNA 2159 ncRNA 232-293 chr5 19871776 19871936 + 2 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) 14416 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 233-149 chr19 52038253 52038423 + 2 NA intron (NM_001322284, intron 4 of 4) AluSp|SINE|Alu -9959 NM_025040 80110 Hs.292336 NM_025040 ENSG00000142556 ZNF614 - zinc finger protein 614 protein-coding 247-320 chr5 31812864 31813067 + 2 NA intron (NM_178140, intron 2 of 24) Charlie7|DNA|hAT-Charlie 123194 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 801-62 chr8 130656244 130656847 + 2 NA Intergenic L2a|LINE|L2 -212871 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 636-44 chr14 52231140 52231587 + 2 NA Intergenic HAL1|LINE|L1 -36335 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 455-61 chr12 85703757 85704122 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 132470 NM_005447 9182 Hs.527881 NM_005447 ENSG00000198774 RASSF9 P-CIP1|PAMCI|PCIP1 Ras association domain family member 9 protein-coding 239-237 chr3 57318754 57318903 + 2 NA intron (NM_001366028, intron 65 of 73) L1MA8|LINE|L1 -26143 NM_001142733 142686 Hs.665154 NM_130387 ENSG00000239388 ASB14 - ankyrin repeat and SOCS box containing 14 protein-coding 407-230 chr4 131175128 131175469 + 2 NA Intergenic Intergenic -589540 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 346-104 chr12 40701422 40701728 + 2 NA intron (NM_001256063, intron 1 of 15) intron (NM_001256063, intron 1 of 15) 9133 NM_001256063 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 242-62 chr11 98905578 98905797 + 2 NA Intergenic L1MA3|LINE|L1 -115262 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 283-253 chr2 222313321 222313600 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -5011 NR_136642 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 202-266 chr8 140102245 140102409 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -1792 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 205-264 chr7 96603696 96603881 + 2 NA intron (NR_163950, intron 3 of 6) intron (NR_163950, intron 3 of 6) 60550 NR_038948 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 221-146 chr2 114676462 114676679 + 2 NA intron (NM_001321908, intron 2 of 25) MER5A1|DNA|hAT-Charlie 156978 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 498-213 chr5 44909633 44909986 + 2 NA Intergenic Intergenic 100862 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 496-160 chr20 13400427 13400916 + 2 NA intron (NM_017714, intron 13 of 13) intron (NM_017714, intron 13 of 13) -160984 NR_040043 100505536 Hs.665253 NR_040043 ISM1-AS1 - ISM1 antisense RNA 1 ncRNA 238-167 chr2 51461723 51461854 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 429187 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 329-211 chr17 5187562 5187844 + 2 NA intron (NM_032530, intron 1 of 1) MIR|SINE|MIR 4165 NM_032530 84622 Hs.658402 NM_032530 ENSG00000180626 ZNF594 - zinc finger protein 594 protein-coding 566-96 chr2 119475163 119475635 + 2 NA intron (NM_002980, intron 3 of 12) intron (NM_002980, intron 3 of 12) -1055 NR_147847 107105282 Hs.670673 NR_147846 ENSG00000231013 LOC107105282 - uncharacterized LOC107105282 ncRNA 328-532 chr7 45933299 45933482 + 2 NA Intergenic L1PB1|LINE|L1 -12118 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 402-58 chr12 13765931 13766264 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 214259 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 314-84 chr11 5523991 5524268 + 2 NA Intergenic (AGAT)n|Simple_repeat|Simple_repeat -2344 NR_133006 101927763 NR_133006 OLFM5P - olfactomedin family member 5, pseudogene pseudo 373-353 chr6 40262154 40262348 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 93755 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 301-57 chr11 11532912 11533091 + 2 NA intron (NM_001363464, intron 1 of 9) intron (NM_001363464, intron 1 of 9) 89004 NM_198516 374378 Hs.655152 NM_198516 ENSG00000110328 GALNT18 GALNACT18|GALNT15|GALNTL4|GalNAc-T15|GalNAc-T18 polypeptide N-acetylgalactosaminyltransferase 18 protein-coding 347-162 chr16 8271895 8272226 + 2 NA Intergenic Intergenic 317778 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 172-118 chr6 157863841 157863975 + 2 NA intron (NM_016224, intron 1 of 17) intron (NM_016224, intron 1 of 17) 40662 NM_016224 51429 Hs.191213 NM_016224 ENSG00000130340 SNX9 SDP1|SH3PX1|SH3PXD3A|WISP sorting nexin 9 protein-coding 459-161 chr20 38282428 38282735 + 2 NA intron (NR_104170, intron 1 of 1) THE1D|LTR|ERVL-MaLR -21569 NM_001725 671 Hs.529019 NM_001725 ENSG00000101425 BPI BPIFD1|rBPI bactericidal permeability increasing protein protein-coding 375-75 chr11 63154771 63155094 + 2 NA Intergenic L1MA4A|LINE|L1 -10711 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 258-238 chr21 15215592 15215789 + 2 NA Intergenic L1PA5|LINE|L1 -150690 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 241-422 chr9 25933657 25933835 + 2 NA Intergenic Intergenic -132929 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 186-14 chr10 17264867 17264990 + 2 NA Intergenic Intergenic -34943 NR_108061 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 195-43 chr11 134753680 134753844 + 2 NA intron (NR_147836, intron 1 of 1) intron (NR_147836, intron 1 of 1) 17817 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 412-352 chrX 35777533 35777787 + 2 NA Intergenic MER51E|LTR|ERV1 -20682 NM_001099921 139604 NM_001099921 ENSG00000189023 MAGEB16 - MAGE family member B16 protein-coding 339-355 chr3 45352651 45352896 + 2 NA Intergenic Intergenic -35803 NM_015340 23395 Hs.526975 NM_015340 ENSG00000011376 LARS2 HLASA|LEURS|PRLTS4|mtLeuRS leucyl-tRNA synthetase 2, mitochondrial protein-coding 767-58 chr8 138382493 138383078 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 114476 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 127-7 chr1 185721378 185721499 + 2 NA Intergenic Intergenic -12953 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 231-245 chr4 18029559 18029777 + 2 NA Intergenic Intergenic -7793 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 245-99 chr12 61827453 61827600 + 2 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 365313 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 328-157 chr14 68774766 68775007 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 19028 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 237-253 chr3 134781641 134781804 + 2 NA Intergenic L1ME3D|LINE|L1 -13538 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 327-332 chr3 77200520 77200825 + 2 NA intron (NM_001290039, intron 2 of 26) intron (NM_001290039, intron 2 of 26) 102660 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 205-205 chr4 77996601 77996794 + 2 NA Intergenic MER21C|LTR|ERVL -60626 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 218-103 chr15 58711314 58711516 + 2 NA intron (NM_001320570, intron 2 of 14) MIR3|SINE|MIR -17808 NR_073415 664618 Hs.670224 NR_002927 HSP90AB4P HSP90Bd heat shock protein 90 alpha family class B member 4, pseudogene pseudo 560-195 chr9 79123504 79123925 + 2 NA Intergenic Intergenic 21952 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 246-420 chr8 127042212 127042377 + 2 NA Intergenic Intergenic 29140 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 241-77 chr12 5189988 5190176 + 2 NA Intergenic MER117|DNA|hAT-Charlie 53069 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 490-284 chr8 50242776 50243149 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 78831 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 210-170 chr3 37180228 37180410 + 2 NA Intergenic Intergenic -3959 NM_001348304 9209 Hs.740522 NM_006309 ENSG00000093167 LRRFIP2 HUFI-2 LRR binding FLII interacting protein 2 protein-coding 265-363 chr7 88071880 88072030 + 2 NA intron (NM_001324421, intron 3 of 28) intron (NM_001324421, intron 3 of 28) 137704 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 332-228 chr19 34656939 34657261 + 2 NA intron (NR_027620, intron 1 of 3) L1PA6|LINE|L1 11227 NR_045208 100130342 Hs.679909 NR_045208 SCGB2B3P C2B|SCGB4A3P secretoglobin family 2B member 3, pseudogene pseudo 399-283 chr7 62959562 62959802 + 2 NA Intergenic ALR/Alpha|Satellite|centr 344374 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 229-318 chr5 123716473 123716662 + 2 NA Intergenic Intergenic 171150 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 402-235 chr4 66678749 66679001 + 2 NA Intergenic L1PB4|LINE|L1 402051 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 258-42 chr10 19117438 19117602 + 2 NA intron (NM_001142308, intron 5 of 39) intron (NM_001142308, intron 5 of 39) 68719 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 461-80 chr14 81636846 81637244 + 2 NA Intergenic L1PA16|LINE|L1 -13984 NR_110074 101928559 Hs.525499 NR_110074 ENSG00000258977 LINC01467 - long intergenic non-protein coding RNA 1467 ncRNA 839-20 chr2 52916143 52916685 + 2 NA Intergenic Intergenic -213799 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 265-145 chr17 68547688 68547873 + 2 NA intron (NM_017565, intron 4 of 10) Tigger1|DNA|TcMar-Tigger 10647 NR_027751 54757 Hs.268874 NM_017565 ENSG00000108950 FAM20A AI1G|AIGFS|FP2747 FAM20A golgi associated secretory pathway pseudokinase protein-coding 799-52 chr7 122639331 122639924 + 2 NA intron (NM_001167940, intron 3 of 29) L1MD2|LINE|L1 59490 NM_139175 168433 Hs.126730 NM_139175 ENSG00000188050 RNF133 - ring finger protein 133 protein-coding 392-146 chr2 61701939 61702157 + 2 NA Intergenic Intergenic 152012 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 348-270 chr20 53450299 53450493 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -102374 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 327-145 chr14 42306099 42306339 + 2 NA Intergenic L1ME3B|LINE|L1 699363 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 273-252 chr2 237482893 237483083 + 2 NA Intergenic Intergenic -3422 NM_001281474 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 376-134 chr17 10956754 10956981 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -118780 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 386-262 chr4 65774731 65775025 + 2 NA Intergenic L1ME3B|LINE|L1 -104383 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 353-117 chr12 90398107 90398335 + 2 NA Intergenic MER70-int|LTR|ERVL 104903 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 532-226 chr6 69254214 69254741 + 2 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 541989 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 393-172 chr2 143503160 143503403 + 2 NA intron (NM_018460, intron 9 of 13) intron (NM_018460, intron 9 of 13) 373862 NM_018460 55843 Hs.171011 NM_018460 ENSG00000075884 ARHGAP15 BM046 Rho GTPase activating protein 15 protein-coding 297-149 chr15 61466150 61466397 + 2 NA Intergenic MER2|DNA|TcMar-Tigger -236971 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 410-58 chr11 81982589 81982885 + 2 NA intron (NR_120571, intron 6 of 7) L1MC3|LINE|L1 -91901 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 524-250 chr8 30047465 30047841 + 2 NA Intergenic Intergenic 35411 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 600-128 chr8 111271717 111272285 + 2 NA Intergenic AluY|SINE|Alu -35798 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 282-155 chr16 8499107 8499312 + 2 NA Intergenic MER6|DNA|TcMar-Tigger 90629 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 284-354 chr6 91470433 91470634 + 2 NA Intergenic Intergenic -51127 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 230-6 chr1 66632188 66632361 + 2 NA intron (NM_001350218, intron 2 of 22) MIRb|SINE|MIR 3834 NR_036060 100422871 NR_036060 ENSG00000264720 MIR3117 mir-3117 microRNA 3117 ncRNA 663-117 chr8 89148828 89149317 + 2 NA Intergenic Intergenic 608639 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 290-348 chr5 80365973 80366136 + 2 NA Intergenic Intergenic -14088 NR_003665 441089 Hs.568291 NR_003665 CRSP8P - mediator complex subunit 27 pseudogene pseudo 344-340 chr3 189371707 189371988 + 2 NA Intergenic L2c|LINE|L2 -131253 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 385-210 chr20 42720039 42720302 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 34687 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 354-140 chr14 66266217 66266459 + 2 NA Intergenic Intergenic -220033 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 302-106 chr12 59232615 59232809 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -312174 NM_153377 121227 Hs.253736 NM_153377 ENSG00000139263 LRIG3 LIG3 leucine rich repeats and immunoglobulin like domains 3 protein-coding 354-151 chr15 36380944 36381250 + 2 NA Intergenic MER5C|DNA|hAT-Charlie -198529 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 251-355 chr6 159867696 159867921 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -23180 NM_001366704 4142 Hs.99900 NM_002377 ENSG00000130368 MAS1 MAS|MGRA MAS1 proto-oncogene, G protein-coupled receptor protein-coding 250-463 chr9 108189616 108189781 + 2 NA Intergenic Intergenic 666288 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 302-35 chr1 244561541 244561782 + 2 NA intron (NM_001130957, intron 10 of 21) intron (NM_001130957, intron 10 of 21) -91387 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 297-407 chr6 91125703 91125975 + 2 NA Intergenic Intergenic -395821 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 376-297 chr4 130881119 130881340 + 2 NA Intergenic Intergenic 504868 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 454-259 chr5 60992184 60992559 + 2 NA intron (NM_174889, intron 1 of 3) L1MA1|LINE|L1 47166 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 290-297 chr3 171606170 171606434 + 2 NA intron (NM_002662, intron 25 of 26) L2|LINE|L2 -145894 NR_027767 23043 Hs.34024 NM_015028 ENSG00000154310 TNIK MRT54 TRAF2 and NCK interacting kinase protein-coding 440-39 chr12 6257660 6258001 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -52606 NM_018173 55200 Hs.631660 NM_018173 ENSG00000008323 PLEKHG6 MyoGEF pleckstrin homology and RhoGEF domain containing G6 protein-coding 198-128 chr2 120408356 120408509 + 2 NA Intergenic L1M5|LINE|L1 57917 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 265-129 chr16 5606238 5606422 + 2 NA intron (NR_110902, intron 2 of 2) L2c|LINE|L2 9920 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 382-266 chr3 70135086 70135373 + 2 NA Intergenic Intergenic 135485 NR_110000 101927152 Hs.382046 NR_110000 ENSG00000240405 SAMMSON LINC01212 survival associated mitochondrial melanoma specific oncogenic non-coding RNA ncRNA 326-199 chr17 72494390 72494586 + 2 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 98316 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 603-88 chr2 107681266 107681788 + 2 NA Intergenic L1MC3|LINE|L1 -72585 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 322-231 chr2 13337294 13337505 + 2 NA Intergenic L1PA16|LINE|L1 -330386 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 248-396 chr8 49468089 49468303 + 2 NA Intergenic Intergenic 43984 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 275-80 chr12 17380964 17381211 + 2 NA Intergenic Intergenic 207991 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 345-54 chr10 35762383 35762594 + 2 NA Intergenic Intergenic -15814 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 305-394 chr4 81430739 81430959 + 2 NA intron (NM_152545, intron 13 of 13) intron (NM_152545, intron 13 of 13) 41058 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 528-18 chr1 175660601 175660921 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 82834 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 357-379 chr6 40600428 40600617 + 2 NA Intergenic L2c|LINE|L2 -13158 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 222-390 chr9 93882981 93883142 + 2 NA Intergenic L1M4|LINE|L1 63704 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 277-290 chr4 75430381 75430530 + 2 NA Intergenic L1MA8|LINE|L1 76379 NR_033964 441025 Hs.407667 NR_033964 ENSG00000251383 LINC02483 - long intergenic non-protein coding RNA 2483 ncRNA 286-195 chr2 34219468 34219745 + 2 NA intron (NR_126403, intron 4 of 5) MER45B|DNA|hAT-Tip100 152380 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 199-33 chr11 45262382 45262543 + 2 NA intron (NM_001247987, intron 2 of 7) AluJb|SINE|Alu 23879 NM_020826 57586 Hs.436643 NM_020826 ENSG00000019505 SYT13 - synaptotagmin 13 protein-coding 282-333 chr4 36573429 36573595 + 2 NA intron (NR_149124, intron 3 of 4) intron (NR_149124, intron 3 of 4) 68388 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 317-323 chr3 175869407 175869665 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -93203 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 358-221 chr2 83337451 83337695 + 2 NA Intergenic MIR|SINE|MIR -185241 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 246-189 chr2 44864745 44864944 + 2 NA Intergenic L1MC1|LINE|L1 74044 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 256-123 chr14 59289841 59290041 + 2 NA intron (NM_001270520, intron 2 of 24) L1PA16|LINE|L1 26500 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 263-17 chr1 111304407 111304607 + 2 NA intron (NM_021797, intron 1 of 8) L1MB3|LINE|L1 13656 NM_001040623 27159 Hs.128814 NM_021797 ENSG00000134216 CHIA AMCASE|CHIT2|TSA1902 chitinase acidic protein-coding 150-90 chr5 30862058 30862156 + 2 NA Intergenic L1ME3A|LINE|L1 -331579 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 450-123 chr19 11806250 11806512 + 2 NA exon (NM_152356, exon 3 of 3) exon (NM_152356, exon 3 of 3) 7858 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 283-268 chr20 55993749 55993928 + 2 NA Intergenic Intergenic 11681 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 467-219 chr5 32883630 32883984 + 2 NA Intergenic L1MA5A|LINE|L1 -63636 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 414-336 chr8 130486982 130487282 + 2 NA Intergenic MIRb|SINE|MIR -43458 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 348-494 chr7 52595662 52595981 + 2 NA Intergenic LOR1-int|LTR|ERV1 -439812 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 133-89 chrX 111894304 111894399 + 2 NA intron (NM_001195577, intron 1 of 3) intron (NM_001195577, intron 1 of 3) 12454 NM_001195577 100329135 Hs.247868 NM_001195576 ENSG00000204025 TRPC5OS TRPC5-AS1 TRPC5 opposite strand protein-coding 164-77 chr3 56164331 56164424 + 2 NA intron (NR_132749, intron 4 of 17) L1MB7|LINE|L1 304090 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 244-154 chr2 40333518 40333694 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 96698 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 458-226 chr6 86568761 86569090 + 2 NA Intergenic Intergenic -368603 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 290-73 chr11 40977444 40977645 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 482092 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 504-143 chr2 187641102 187641443 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -86767 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 255-317 chr5 23610690 23610913 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 103146 NM_001310214 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 367-434 chr8 5466293 5466549 + 2 NA Intergenic Intergenic -471507 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 163-120 chr8 65666776 65666924 + 2 NA intron (NM_001145839, intron 1 of 6) intron (NM_001145839, intron 1 of 6) -3023 NM_001145838 9650 Hs.584788 NM_014637 ENSG00000066855 MTFR1 CHPPR|FAM54A2 mitochondrial fission regulator 1 protein-coding 295-162 chr16 9418720 9418935 + 2 NA Intergenic MIRb|SINE|MIR 26158 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 536-107 chr2 8674429 8674826 + 2 NA intron (NR_110154, intron 1 of 3) L1MDa|LINE|L1 7234 NR_110153 100506299 Hs.439031 NR_110153 ENSG00000235092 ID2-AS1 - ID2 antisense RNA 1 ncRNA 293-167 chr18 55711702 55711943 + 2 NA Intergenic L1MEf|LINE|L1 68599 NR_145453 100132501 Hs.634003 NR_145452 LINC01415 TCONS_00026208 long intergenic non-protein coding RNA 1415 ncRNA 251-410 chr8 142930975 142931165 + 2 NA Intergenic Ricksha|DNA|MULE-MuDR -13227 NM_000498 1585 Hs.632054 NM_000498 ENSG00000179142 CYP11B2 ALDOS|CPN2|CYP11B|CYP11BL|CYPXIB2|P-450C18|P450C18|P450aldo cytochrome P450 family 11 subfamily B member 2 protein-coding 512-172 chr3 109117167 109117596 + 2 NA intron (NM_014429, intron 1 of 27) intron (NM_014429, intron 1 of 27) 753 NM_014429 27136 Hs.591296 NM_014429 ENSG00000114487 MORC1 CT33|MORC|ZCW6 MORC family CW-type zinc finger 1 protein-coding 225-225 chr3 136642735 136642905 + 2 NA intron (NM_005862, intron 1 of 33) MLT1C|LTR|ERVL-MaLR 109558 NM_005862 10274 Hs.412586 NM_005862 ENSG00000118007 STAG1 MRD47|SA1|SCC3A stromal antigen 1 protein-coding 335-80 chr11 4577196 4577439 + 2 NA Intergenic LTR16|LTR|ERVL -9474 NM_001005170 143502 Hs.553607 NM_001005170 ENSG00000226288 OR52I2 OR11-12|OR52I1 olfactory receptor family 52 subfamily I member 2 protein-coding 273-292 chr3 72564084 72564304 + 2 NA Intergenic Intergenic 100055 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 549-92 chr19 29632997 29633503 + 2 NA Intergenic AluSz6|SINE|Alu 26967 NR_027368 10775 Hs.412870 NM_006627 ENSG00000105171 POP4 RPP29 POP4 homolog, ribonuclease P/MRP subunit protein-coding 579-86 chr20 42863464 42863857 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -105083 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 398-379 chr9 29711227 29711550 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -497787 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 531-257 chr8 138785125 138785442 + 2 NA intron (NM_152888, intron 12 of 64) intron (NM_152888, intron 12 of 64) 128758 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 312-446 chr6 45031793 45032056 + 2 NA intron (NM_001350327, intron 2 of 9) intron (NM_001350327, intron 2 of 9) 165846 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 147-84 chr8 81565941 81566031 + 2 NA Intergenic L1MA3|LINE|L1 -34596 NR_144370 646486 Hs.586370 NM_001105281 ENSG00000197416 FABP12 - fatty acid binding protein 12 protein-coding 219-337 chr7 55826114 55826260 + 2 NA intron (NM_207366, intron 6 of 9) L1MA9|LINE|L1 36565 NM_207366 346288 Hs.453629 NM_207366 ENSG00000154997 SEPTIN14 SEPT14 septin 14 protein-coding 291-207 chr2 30761989 30762226 + 2 NA intron (NM_144575, intron 7 of 22) MIR3|SINE|MIR 45339 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 353-119 chr12 98934025 98934350 + 2 NA intron (NM_152788, intron 17 of 25) L1MB1|LINE|L1 -38896 NM_001352209 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 278-224 chr2 106694230 106694480 + 2 NA Intergenic HAL1ME|LINE|L1 191673 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 399-334 chr9 125499256 125499550 + 2 NA intron (NM_024117, intron 7 of 10) intron (NM_024117, intron 7 of 10) 207805 NM_001006618 79109 Hs.495138 NM_024117 ENSG00000119487 MAPKAP1 JC310|MIP1|SIN1|SIN1b|SIN1g MAPK associated protein 1 protein-coding 613-25 chr11 82798917 82799352 + 2 NA Intergenic L1PA15-16|LINE|L1 -65270 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 356-407 chr5 111962045 111962339 + 2 NA intron (NR_046678, intron 2 of 3) intron (NR_046678, intron 2 of 3) 14740 NM_001142474 9315 Hs.36053 NM_004772 ENSG00000134986 NREP C5orf13|D4S114|P311|PRO1873|PTZ17|SEZ17 neuronal regeneration related protein protein-coding 558-163 chr4 145517535 145517989 + 2 NA promoter-TSS (NR_126371) promoter-TSS (NR_126371) -568 NR_126371 104326058 Hs.714527 NR_126371 ENSG00000250902 SMAD1-AS1 - SMAD1 antisense RNA 1 ncRNA 235-292 chr5 102001015 102001169 + 2 NA Intergenic L1MB1|LINE|L1 295192 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 185-38 chr11 87558560 87558719 + 2 NA Intergenic (AAAAT)n|Simple_repeat|Simple_repeat 160772 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 659-75 chr3 163459577 163460064 + 2 NA Intergenic L1M5|LINE|L1 -156519 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 276-174 chr16 2800694 2800933 + 2 NA intron (NM_001354586, intron 5 of 6) Tigger3|DNA|TcMar-Tigger -4281 NR_145775 109616997 NR_145775 ENSG00000221719 SNORA3C - small nucleolar RNA, H/ACA box 3C snoRNA 488-283 chr9 20281362 20281838 + 2 NA Intergenic L1ME3A|LINE|L1 129638 NR_039684 100616229 NR_039684 ENSG00000263790 MIR4473 - microRNA 4473 ncRNA 279-310 chr5 11761028 11761233 + 2 NA intron (NM_001288717, intron 1 of 20) intron (NM_001288717, intron 1 of 20) 143316 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 328-589 chr8 137788791 137788997 + 2 NA Intergenic Intergenic 294651 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 315-458 chr8 3438463 3438699 + 2 NA intron (NM_033225, intron 12 of 69) L1MD1|LINE|L1 -710130 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 419-161 chr2 226073279 226073552 + 2 NA Intergenic Intergenic -69379 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 286-100 chr12 132934181 132934326 + 2 NA intron (NM_001164715, intron 2 of 4) AluSx1|SINE|Alu 22053 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 192-188 chr7 21575283 21575462 + 2 NA intron (NM_001277115, intron 8 of 81) intron (NM_001277115, intron 8 of 81) 32333 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 306-264 chr2 210763458 210763625 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 145970 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 292-343 chr5 25821992 25822197 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 631141 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 370-475 chr9 78701554 78701867 + 2 NA Intergenic Intergenic 404585 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 347-208 chr2 46071518 46071753 + 2 NA intron (NM_005400, intron 10 of 14) intron (NM_005400, intron 10 of 14) -225772 NM_001430 2034 Hs.468410 NM_001430 ENSG00000116016 EPAS1 ECYT4|HIF2A|HLF|MOP2|PASD2|bHLHe73 endothelial PAS domain protein 1 protein-coding 425-158 chr2 218206004 218206294 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -11040 NM_152862 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 496-206 chr5 15317742 15318027 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -51324 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 300-300 chr3 177484359 177484528 + 2 NA intron (NR_047568, intron 1 of 3) Tigger1|DNA|TcMar-Tigger 42522 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 414-330 chr8 96202176 96202427 + 2 NA Intergenic L1MA5A|LINE|L1 33333 NR_045639 7381 Hs.131255 NM_006294 ENSG00000156467 UQCRB MC3DN3|QCR7|QP-C|QPC|UQBC|UQBP|UQCR6|UQPC ubiquinol-cytochrome c reductase binding protein protein-coding 421-83 chr14 65881089 65881404 + 2 NA Intergenic L1MA4|LINE|L1 410144 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 501-196 chr4 115164818 115165226 + 2 NA Intergenic Intergenic -51402 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 221-155 chr2 198827549 198827715 + 2 NA Intergenic Intergenic -452535 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 281-304 chr4 109840 110069 + 2 NA Intergenic Intergenic -14522 NR_110529 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 277-4 chr1 45046194 45046433 + 2 NA intron (NM_020883, intron 5 of 13) L2a|LINE|L2 34059 NR_158185 7389 Hs.78601 NM_000374 ENSG00000126088 UROD PCT|UPD uroporphyrinogen decarboxylase protein-coding 449-92 chr16 51421262 51421601 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -270159 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 596-39 chr11 83879951 83880391 + 2 NA intron (NM_001142700, intron 7 of 19) intron (NM_001142700, intron 7 of 19) -197746 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 448-220 chr5 114011925 114012335 + 2 NA Intergenic Intergenic -349940 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 324-579 chrX 67159246 67159527 + 2 NA Intergenic L1MA1|LINE|L1 -384635 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 239-85 chr13 38833790 38833966 + 2 NA intron (NM_207361, intron 6 of 23) L1MEi|LINE|L1 -6287 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 328-257 chr2 54025564 54025853 + 2 NA intron (NM_001320587, intron 2 of 5) L1PB1|LINE|L1 54595 NM_001320587 98 Hs.516173 NM_138448 ENSG00000170634 ACYP2 ACYM|ACYP acylphosphatase 2 protein-coding 322-309 chr22 22939146 22939440 + 2 NA Intergenic Intergenic 51477 NM_001178126 100423062 Hs.449574 NM_001178126 ENSG00000254709 IGLL5 IGL|IGLV|VL-MAR immunoglobulin lambda like polypeptide 5 protein-coding 285-188 chr2 15167774 15167975 + 2 NA intron (NR_052013, intron 50 of 50) intron (NR_052013, intron 50 of 50) 393460 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 553-43 chr12 24556752 24557146 + 2 NA intron (NM_152989, intron 1 of 17) intron (NM_152989, intron 1 of 17) 5542 NM_152989 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 367-208 chr2 96395715 96396072 + 2 NA Intergenic Intergenic 60127 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 370-136 chr14 33332226 33332527 + 2 NA intron (NM_173159, intron 3 of 11) intron (NM_173159, intron 3 of 11) -376561 NR_132771 106635522 NR_132771 SNORA89 - small nucleolar RNA, H/ACA box 89 snoRNA 206-252 chr7 49640221 49640401 + 2 NA Intergenic Intergenic -133327 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 158-76 chr3 109442592 109442724 + 2 NA intron (NR_109841, intron 2 of 4) L1M1|LINE|L1 32668 NR_109841 401082 Hs.477089 NM_001145553 ENSG00000228980 LINC01205 - long intergenic non-protein coding RNA 1205 ncRNA 518-20 chr10 17480630 17481023 + 2 NA Intergenic MER110A|LTR|ERV1 -26231 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 469-279 chr8 76093725 76094121 + 2 NA Intergenic L1M4c|LINE|L1 -312731 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 374-287 chr4 178422098 178422421 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -514323 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 882-27 chr21 27085613 27086204 + 2 NA Intergenic Intergenic -118820 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 261-88 chr13 51094612 51094803 + 2 NA intron (NR_102432, intron 1 of 3) L1MCa|LINE|L1 16521 NM_001351589 647166 Hs.195052 NM_001351589 ENSG00000226792 C13orf42 LINC00371|LINC00372 chromosome 13 open reading frame 42 protein-coding 729-10 chr10 69075928 69076482 + 2 NA Intergenic AluSx|SINE|Alu -11398 NM_001321053 5552 Hs.1908 NM_002727 ENSG00000122862 SRGN PPG|PRG|PRG1 serglycin protein-coding 126-43 chr4 33363008 33363073 + 2 NA Intergenic Intergenic 676853 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 200-84 chr15 63543677 63543866 + 2 NA intron (NM_006537, intron 3 of 14) intron (NM_006537, intron 3 of 14) 39178 NR_046341 9960 Hs.458499 NM_006537 ENSG00000140455 USP3 SIH003|UBP ubiquitin specific peptidase 3 protein-coding 249-382 chr7 49812063 49812223 + 2 NA intron (NR_136188, intron 2 of 3) L1ME1|LINE|L1 36810 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 243-26 chr1 218209643 218209801 + 2 NA Intergenic MER44B|DNA|TcMar-Tigger -75571 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 127-80 chr8 135269783 135269869 + 2 NA intron (NR_120396, intron 1 of 4) intron (NR_120396, intron 1 of 4) 35695 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 341-103 chr11 133336209 133336440 + 2 NA intron (NM_001012393, intron 1 of 7) intron (NM_001012393, intron 1 of 7) 196177 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 312-401 chr5 8529289 8529543 + 2 NA Intergenic Intergenic 68491 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 300-304 chr3 196796625 196796909 + 2 NA intron (NM_002577, intron 2 of 14) L1MEf|LINE|L1 56910 NM_002577 5062 Hs.518530 NM_002577 ENSG00000180370 PAK2 PAK65|PAKgamma p21 (RAC1) activated kinase 2 protein-coding 380-25 chr1 169031056 169031383 + 2 NA intron (NR_104091, intron 3 of 4) intron (NR_104091, intron 3 of 4) 55786 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 381-23 chr1 214934435 214934690 + 2 NA Intergenic Intergenic -70980 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 228-278 chr5 143485618 143485800 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR -50197 NM_001018075 2908 Hs.122926 NM_000176 ENSG00000113580 NR3C1 GCCR|GCR|GCRST|GR|GRL nuclear receptor subfamily 3 group C member 1 protein-coding 327-307 chr21 27617552 27617868 + 2 NA Intergenic L1MCa|LINE|L1 -104669 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 419-109 chr16 81340687 81340975 + 2 NA intron (NM_022041, intron 1 of 10) L1PA7|LINE|L1 25865 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 345-248 chr2 37621305 37621635 + 2 NA Intergenic Intergenic 50729 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 387-71 chr11 129570719 129571055 + 2 NA Intergenic L1ME3A|LINE|L1 46382 NR_120582 101929557 Hs.385785 NR_120582 ENSG00000281097 LINC01395 - long intergenic non-protein coding RNA 1395 ncRNA 332-568 chr9 79222359 79222537 + 2 NA Intergenic Intergenic -76782 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 252-91 chr12 51396712 51396899 + 2 NA intron (NM_001258401, intron 1 of 24) intron (NM_001258401, intron 1 of 24) -5399 NM_007210 11226 Hs.505575 NM_007210 ENSG00000139629 GALNT6 GALNAC-T6|GalNAcT6 polypeptide N-acetylgalactosaminyltransferase 6 protein-coding 458-277 chrX 36772000 36772322 + 2 NA Intergenic Intergenic -236198 NM_001013736 442444 Hs.535216 NM_001013736 ENSG00000198173 FAM47C - family with sequence similarity 47 member C protein-coding 408-360 chr9 118978967 118979308 + 2 NA Intergenic Intergenic 299466 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 360-230 chr2 123206079 123206293 + 2 NA Intergenic L1MA2|LINE|L1 -132705 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 366-156 chr16 74152844 74153132 + 2 NA Intergenic Intergenic 62533 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 236-350 chr8 51773964 51774132 + 2 NA intron (NM_144651, intron 1 of 22) intron (NM_144651, intron 1 of 22) 35397 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 324-293 chr2 188834807 188835020 + 2 NA Intergenic L1MCb|LINE|L1 -44790 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 320-217 chr18 7266543 7266796 + 2 NA Intergenic Intergenic 35565 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 188-62 chr15 69653199 69653378 + 2 NA intron (NR_126437, intron 3 of 5) intron (NR_126437, intron 3 of 5) 61088 NR_126437 104472713 Hs.430824 NR_126437 ENSG00000245750 PCAT29 - prostate cancer associated transcript 29 ncRNA 351-283 chr22 32609661 32609942 + 2 NA intron (NM_003490, intron 6 of 13) intron (NM_003490, intron 6 of 13) 134564 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 245-311 chr6 137000007 137000157 + 2 NA TTS (NM_001278724) TTS (NM_001278724) -6851 NR_027994 100294720 Hs.520412 NR_027994 ENSG00000225391 NHEG1 - neuroblastoma highly expressed 1 ncRNA 265-29 chr10 26060452 26060587 + 2 NA intron (NM_017433, intron 10 of 34) intron (NM_017433, intron 10 of 34) 126290 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 185-99 chr2 103907444 103907583 + 2 NA Intergenic Intergenic 500819 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 442-102 chr17 34503178 34503547 + 2 NA Intergenic Intergenic 76007 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 206-21 chr1 196535299 196535483 + 2 NA intron (NM_001287820, intron 1 of 26) intron (NM_001287820, intron 1 of 26) 47090 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 513-142 chr2 130738045 130738396 + 2 NA Intergenic Intergenic 9150 NM_207364 344561 Hs.452574 NM_207364 ENSG00000173302 GPR148 BTR|PGR6 G protein-coupled receptor 148 protein-coding 229-220 chr20 16949695 16949862 + 2 NA Intergenic Intergenic 201425 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 399-132 chr2 5798651 5798981 + 2 NA Intergenic AluSz|SINE|Alu 13780 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 287-113 chr12 37839308 37839587 + 2 NA Intergenic ALR/Alpha|Satellite|centr -477327 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 240-189 chr18 27503206 27503380 + 2 NA Intergenic L1MA2|LINE|L1 -160637 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 310-22 chr1 178104484 178104701 + 2 NA intron (NM_170692, intron 1 of 17) intron (NM_170692, intron 1 of 17) 10488 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 240-300 chr3 162228655 162228842 + 2 NA Intergenic Intergenic 731940 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 342-409 chr5 86948116 86948375 + 2 NA Intergenic MLT2B1|LTR|ERVL 166709 NR_036243 100422887 NR_036243 ENSG00000265919 MIR4280 - microRNA 4280 ncRNA 352-273 chr2 234782824 234783084 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 100286 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 334-103 chr12 5818203 5818445 + 2 NA intron (NM_001278596, intron 7 of 25) MLT2A1|LTR|ERVL 126935 NM_001364791 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 437-260 chr7 112170578 112170915 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 35653 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 237-30 chr10 51540176 51540308 + 2 NA intron (NM_001098512, intron 3 of 17) intron (NM_001098512, intron 3 of 17) 159353 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 266-284 chr4 59861624 59861837 + 2 NA Intergenic L1MA3|LINE|L1 848157 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 699-52 chr2 123712568 123712998 + 2 NA Intergenic Intergenic 312391 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 287-66 chr10 83869645 83869916 + 2 NA Intergenic L2|LINE|L2 -192691 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 297-207 chr2 41220767 41220929 + 2 NA Intergenic Intergenic -656707 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 293-27 chr1 245890543 245890808 + 2 NA intron (NM_022743, intron 8 of 11) L1MA3|LINE|L1 526737 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 572-182 chr8 134375795 134376300 + 2 NA Intergenic HERV16-int|LTR|ERVL -222024 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 264-440 chr9 35192257 35192502 + 2 NA intron (NM_006377, intron 1 of 38) HUERS-P3b-int|LTR|ERV1 30370 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 366-148 chr16 17634293 17634527 + 2 NA Intergenic AluJb|SINE|Alu -163450 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 312-74 chr11 15723855 15724046 + 2 NA Intergenic MIRc|SINE|MIR 80065 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 328-614 chr9 112982859 112983076 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 29225 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 291-476 chr8 136492292 136492556 + 2 NA Intergenic Intergenic -38374 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 234-331 chr5 180714115 180714292 + 2 NA Intergenic L1MB5|LINE|L1 25855 NM_001001657 134083 Hs.554719 NM_001001657 ENSG00000174339 OR2Y1 OR5-2 olfactory receptor family 2 subfamily Y member 1 protein-coding 238-11 chr1 76613964 76614122 + 2 NA intron (NR_146056, intron 4 of 5) intron (NR_146056, intron 4 of 5) 165224 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 333-204 chr18 39308255 39308530 + 2 NA intron (NR_024391, intron 3 of 3) intron (NR_024391, intron 3 of 3) 313783 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 121-51 chr5 26085855 26085926 + 2 NA Intergenic L2a|LINE|L2 894937 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 320-417 chr5 9696098 9696388 + 2 NA intron (NR_027112, intron 9 of 12) intron (NR_027112, intron 9 of 12) -65892 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 235-28 chr1 246015143 246015311 + 2 NA intron (NM_022743, intron 5 of 11) LTR48B|LTR|ERV1 402185 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 278-54 chr11 70749813 70750062 + 2 NA intron (NM_012309, intron 13 of 24) L1MEf|LINE|L1 -88096 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 365-247 chr22 34798973 34799288 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 198786 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 253-264 chr3 90388970 90389106 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1281417 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 192-83 chr17 52360659 52360806 + 2 NA Intergenic Intergenic -29790 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 389-348 chr7 88118653 88118935 + 2 NA intron (NM_001324421, intron 7 of 28) intron (NM_001324421, intron 7 of 28) -97866 NR_120517 102723885 Hs.489040 NR_120517 LOC102723885 - uncharacterized LOC102723885 ncRNA 407-270 chr6 13967716 13968098 + 2 NA intron (NM_001165032, intron 2 of 3) L1M4|LINE|L1 42714 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 846-46 chr6 20889863 20890532 + 2 NA intron (NM_017774, intron 9 of 15) intron (NM_017774, intron 9 of 15) 355740 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 208-195 chr4 117629547 117629683 + 2 NA intron (NR_125757, intron 2 of 3) intron (NR_125757, intron 2 of 3) 201217 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 302-65 chr11 8544300 8544519 + 2 NA intron (NM_030906, intron 1 of 13) intron (NM_030906, intron 1 of 13) 49567 NM_001289061 65975 Hs.501833 NM_030906 ENSG00000130413 STK33 - serine/threonine kinase 33 protein-coding 313-388 chr4 79768093 79768388 + 2 NA Intergenic MER54B|LTR|ERVL -59231 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 356-320 chr3 44594688 44594961 + 2 NA exon (NM_173658, exon 3 of 3) exon (NM_173658, exon 3 of 3) 9860 NR_147691 110354863 Hs.157035 NM_001351732 ZNF660-ZNF197 - ZNF660-ZNF197 readthrough protein-coding 275-215 chr2 199653741 199653968 + 2 NA intron (NR_110270, intron 6 of 6) L1MCa|LINE|L1 45786 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 424-55 chr12 56875582 56875917 + 2 NA Intergenic MER4A1|LTR|ERV1 58659 NM_148897 121214 Hs.380178 NM_148897 ENSG00000170426 SDR9C7 ARCI13|RDHS|SDR-O|SDRO short chain dehydrogenase/reductase family 9C member 7 protein-coding 360-169 chr17 63288846 63289167 + 2 NA intron (NM_025185, intron 8 of 25) L1MCa|LINE|L1 151261 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 505-179 chr20 59760858 59761333 + 2 NA intron (NM_183246, intron 4 of 11) intron (NM_183246, intron 4 of 11) 39885 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 249-165 chr18 36389380 36389573 + 2 NA intron (NM_001281740, intron 3 of 28) intron (NM_001281740, intron 3 of 28) 91763 NM_001281739 80206 Hs.436636 NM_025135 ENSG00000134775 FHOD3 FHOS2|Formactin2 formin homology 2 domain containing 3 protein-coding 296-405 chr6 78793207 78793403 + 2 NA Intergenic Intergenic -74246 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 369-15 chr1 172621337 172621546 + 2 NA Intergenic MER61-int|LTR|ERV1 -37567 NM_001302746 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 584-121 chr4 154999901 155000293 + 2 NA Intergenic Intergenic -208539 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 206-284 chr9 78731818 78732018 + 2 NA Intergenic Intergenic 413748 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 187-127 chr4 31664984 31665130 + 2 NA Intergenic MamTip1|DNA|hAT-Tip100 158513 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 395-123 chr16 59794446 59794779 + 2 NA Intergenic Intergenic -39421 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 551-231 chr9 27953595 27954104 + 2 NA intron (NM_001354574, intron 5 of 5) L1ME4a|LINE|L1 -379983 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 274-49 chr10 74129446 74129609 + 2 NA intron (NM_207012, intron 6 of 9) MIRc|SINE|MIR 21301 NR_135191 26985 Hs.500104 NM_012095 ENSG00000185009 AP3M1 - adaptor related protein complex 3 subunit mu 1 protein-coding 363-160 chr16 20048287 20048542 + 2 NA intron (NM_001002911, intron 1 of 1) intron (NM_001002911, intron 1 of 1) 25364 NM_001318483 124274 Hs.446875 NM_001002911 ENSG00000180269 GPR139 GPRg1|PGR3 G protein-coupled receptor 139 protein-coding 275-82 chr12 26775718 26775937 + 2 NA intron (NM_002223, intron 2 of 56) MLT2A2|LTR|ERVL 57367 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 331-229 chr18 77918496 77918748 + 2 NA Intergenic Intergenic 75105 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 362-5 chr1 37088007 37088302 + 2 NA Intergenic L2a|LINE|L2 -53639 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 372-413 chr5 125917071 125917318 + 2 NA Intergenic HERVP71A-int|LTR|ERV1 -262383 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 436-229 chr5 9101626 9101954 + 2 NA intron (NM_003966, intron 16 of 22) intron (NM_003966, intron 16 of 22) -47895 NR_039779 100616326 NR_039779 ENSG00000266415 MIR4636 mir-4636 microRNA 4636 ncRNA 639-124 chrX 5810461 5810781 + 2 NA Intergenic Intergenic -415737 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 398-382 chr9 34746901 34747294 + 2 NA Intergenic L1ME3A|LINE|L1 -17609 NM_001141917 259308 Hs.522093 NM_001141917 ENSG00000205108 FAM205A C9orf144B family with sequence similarity 205 member A protein-coding 615-112 chr5 118708851 118709357 + 2 NA Intergenic L1ME3E|LINE|L1 112916 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 242-72 chr12 28296628 28296810 + 2 NA intron (NM_001352082, intron 4 of 13) intron (NM_001352082, intron 4 of 13) -105981 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 838-15 chr14 72325544 72326166 + 2 NA intron (NM_001370288, intron 2 of 16) L1ME4b|LINE|L1 -190965 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 472-19 chr1 163574166 163574541 + 2 NA Intergenic Intergenic -151162 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 226-9 chr1 74430423 74430637 + 2 NA intron (NM_015978, intron 17 of 24) intron (NM_015978, intron 17 of 24) 52910 NM_001364665 105378803 NM_001364665 ENSG00000162621 LRRC53 - leucine rich repeat containing 53 protein-coding 303-296 chr3 157306326 157306557 + 2 NA intron (NM_001167911, intron 10 of 12) L1ME3Cz|LINE|L1 -130409 NM_002852 5806 Hs.591286 NM_002852 ENSG00000163661 PTX3 TNFAIP5|TSG-14 pentraxin 3 protein-coding 253-392 chr7 101494310 101494480 + 2 NA intron (NM_133457, intron 3 of 12) AluSz|SINE|Alu 74611 NR_103749 100506527 Hs.535863 NR_103747 ENSG00000233123 LINC01007 - long intergenic non-protein coding RNA 1007 ncRNA 359-406 chr5 106618395 106618731 + 2 NA Intergenic Intergenic 392451 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 303-49 chr10 80310926 80311144 + 2 NA Intergenic L1MB5|LINE|L1 -21377 NM_000429 4143 Hs.282670 NM_000429 ENSG00000151224 MAT1A MAT|MATA1|SAMS|SAMS1 methionine adenosyltransferase 1A protein-coding 263-202 chr2 77704517 77704705 + 2 NA Intergenic Intergenic -182178 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 441-215 chr6 4578987 4579297 + 2 NA Intergenic AluSx|SINE|Alu -31423 NR_122107 497048 Hs.591355 NM_001011540 ENSG00000205444 KU-MEL-3 - uncharacterized LOC497048 ncRNA 416-261 chr5 2573711 2574005 + 2 NA Intergenic L1ME1|LINE|L1 -138733 NR_145480 101234261 NR_145480 ENSG00000281560 LSINCT5 - long stress-induced non-coding transcript 5 ncRNA 325-85 chr10 111752360 111752569 + 2 NA Intergenic L1ME1|LINE|L1 431301 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 891-33 chr6 40070558 40071334 + 2 NA Intergenic Intergenic -136484 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 208-66 chr12 127544512 127544643 + 2 NA Intergenic L1ME4b|LINE|L1 91890 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 309-490 chr6 137915582 137915840 + 2 NA Intergenic Intergenic 30089 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 306-329 chr3 148500282 148500516 + 2 NA Intergenic Intergenic -197472 NM_004835 185 Hs.477887 NM_000685 ENSG00000144891 AGTR1 AG2S|AGTR1B|AT1|AT1AR|AT1B|AT1BR|AT1R|AT2R1|HAT1R angiotensin II receptor type 1 protein-coding 410-66 chr12 25508207 25508490 + 2 NA intron (NM_152590, intron 7 of 8) L1ME3A|LINE|L1 44935 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 315-488 chr8 110438529 110438751 + 2 NA Intergenic Intergenic -462869 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 380-380 chr8 33591121 33591345 + 2 NA TTS (NM_001305116) TTS (NM_001305116) 6564 NM_001305116 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 254-400 chr8 30199030 30199212 + 2 NA Intergenic L2c|LINE|L2 42752 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 249 chr1 14965515 14965731 + 2 NA intron (NM_001370231, intron 3 of 8) L1ME4a|LINE|L1 19704 NM_001017999 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 522-82 chr14 66491517 66491874 + 2 NA intron (NM_001351576, intron 7 of 9) intron (NM_001351576, intron 7 of 9) 5324 NR_110308 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 296-357 chr5 25351071 25351227 + 2 NA Intergenic Intergenic 160196 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 248-382 chr7 65227077 65227292 + 2 NA intron (NR_146906, intron 15 of 17) (TA)n|Simple_repeat|Simple_repeat 86154 NR_146905 285905 Hs.567827 NM_182596 ENSG00000164669 INTS4P1 INTS4L1 integrator complex subunit 4 pseudogene 1 pseudo 586-100 chr3 98431420 98431861 + 2 NA Intergenic L1MA4|LINE|L1 -37840 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 215-324 chr8 133994163 133994342 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 107756 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 418-129 chr2 147018400 147018649 + 2 NA Intergenic Intergenic 431467 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 463-152 chr2 158406678 158406989 + 2 NA intron (NM_138803, intron 1 of 13) AluJb|SINE|Alu 49920 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 412-102 chr15 68295906 68296222 + 2 NA TTS (NM_015322) TTS (NM_015322) 18319 NM_015322 10116 Hs.362733 NM_015322 ENSG00000169018 FEM1B F1A-ALPHA|F1AA|FEM1-beta fem-1 homolog B protein-coding 329-476 chr5 133958778 133958942 + 2 NA intron (NM_020199, intron 2 of 2) intron (NM_020199, intron 2 of 2) 9765 NM_020199 56951 Hs.744034 NM_020199 ENSG00000113583 C5orf15 HTGN29|KCT2 chromosome 5 open reading frame 15 protein-coding 340-6 chr1 44508965 44509264 + 2 NA intron (NM_001319957, intron 1 of 13) intron (NM_001319957, intron 1 of 13) -36379 NR_049849 100847089 NR_049849 ENSG00000263381 MIR5584 - microRNA 5584 ncRNA 327-285 chr2 215637992 215638166 + 2 NA intron (NR_037195, intron 5 of 9) intron (NR_037195, intron 5 of 9) -79964 NR_132383 105373869 Hs.152812 NR_132383 LINC01614 LCAL4 long intergenic non-protein coding RNA 1614 ncRNA 258-99 chr12 126895696 126895911 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -21113 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 336-104 chr11 83841569 83841819 + 2 NA intron (NM_001142699, intron 16 of 27) intron (NM_001142699, intron 16 of 27) -159269 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 180-23 chr10 95449708 95449838 + 2 NA intron (NM_001290295, intron 2 of 24) intron (NM_001290295, intron 2 of 24) -8593 NM_001290298 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 448-56 chr12 12343214 12343655 + 2 NA intron (NM_001363613, intron 1 of 4) intron (NM_001363613, intron 1 of 4) 6808 NM_001363613 54682 Hs.591145 NM_018050 ENSG00000111261 MANSC1 9130403P13Rik|LOH12CR3 MANSC domain containing 1 protein-coding 332-400 chr5 11594053 11594333 + 2 NA intron (NM_001288717, intron 2 of 20) L1ME3A|LINE|L1 -5127 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 300-113 chr14 62224430 62224659 + 2 NA Intergenic MIR|SINE|MIR -84571 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 327-543 chrX 82946278 82946452 + 2 NA Intergenic L1PA8A|LINE|L1 -561925 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 351-516 chr9 74582041 74582329 + 2 NA intron (NM_006914, intron 1 of 9) intron (NM_006914, intron 1 of 9) -33349 NM_001365023 6096 Hs.494178 NM_006914 ENSG00000198963 RORB EIG15|NR1F2|ROR-BETA|RZR-BETA|RZRB|bA133M9.1 RAR related orphan receptor B protein-coding 293-221 chr2 207387742 207387928 + 2 NA Intergenic Intergenic -118411 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 406-116 chr18 7704765 7705099 + 2 NA intron (NM_002845, intron 1 of 30) L1M5|LINE|L1 137616 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 342-524 chr8 114657156 114657356 + 2 NA Intergenic L1MD2|LINE|L1 1010757 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 203-3 chr1 37202197 37202350 + 2 NA Intergenic L1MA9|LINE|L1 40710 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 247-199 chr2 79293531 79293686 + 2 NA Intergenic L2c|LINE|L2 -133855 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 327-135 chr13 47364373 47364609 + 2 NA Intergenic L1MB7|LINE|L1 -467415 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 276-284 chr3 18196064 18196227 + 2 NA intron (NR_161333, intron 4 of 4) L1M4c|LINE|L1 229194 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 378-435 chr8 76178019 76178311 + 2 NA Intergenic L1MD1|LINE|L1 -228489 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 240-79 chr11 55157206 55157396 + 2 NA Intergenic ALR/Alpha|Satellite|centr -104854 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 234-88 chr13 90422634 90422814 + 2 NA Intergenic Intergenic -70564 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 789-12 chr12 24381576 24382069 + 2 NA intron (NM_152989, intron 2 of 17) intron (NM_152989, intron 2 of 17) 158551 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 603-42 chr13 76398957 76399440 + 2 NA Intergenic L1M8|LINE|L1 -464066 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 276-256 chr20 5426451 5426647 + 2 NA Intergenic Intergenic 19199 NR_038239 100507629 Hs.121383 NR_038239 ENSG00000226995 LINC00658 - long intergenic non-protein coding RNA 658 ncRNA 280-110 chr13 59948974 59949162 + 2 NA intron (NM_001258369, intron 17 of 26) LTR54B|LTR|ERV1 -63650 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 530-2 chr1 34426859 34427352 + 2 NA Intergenic Intergenic 242589 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 300-129 chr15 64901762 64901963 + 2 NA Intergenic L1ME3G|LINE|L1 -10040 NM_182703 348094 Hs.207157 NM_182703 ENSG00000166839 ANKDD1A - ankyrin repeat and death domain containing 1A protein-coding 640-32 chr14 48277847 48278235 + 2 NA Intergenic L1M4b|LINE|L1 -483027 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 345-504 chr7 110985454 110985714 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -105422 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 220-268 chr4 156758980 156759146 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 212736 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 475-9 chr1 109528987 109529342 + 2 NA Intergenic Intergenic -10708 NM_031936 83873 Hs.709782 NM_031936 ENSG00000156097 GPR61 BALGR|GPCR3 G protein-coupled receptor 61 protein-coding 278-218 chr2 79757155 79757390 + 2 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) -107913 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 346-240 chr2 62359776 62360008 + 2 NA Intergenic LTR48|LTR|ERV1 144371 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 596-4 chr1 61381579 61381921 + 2 NA intron (NM_001134673, intron 6 of 10) L2b|LINE|L2 -128232 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 138-22 chr14 37834545 37834667 + 2 NA intron (NM_001368142, intron 11 of 12) L1MA4|LINE|L1 62223 NM_001368142 319089 Hs.659936 NM_001007795 ENSG00000139865 TTC6 C14orf25|NCRNA00291 tetratricopeptide repeat domain 6 protein-coding 225-202 chr3 46554632 46554820 + 2 NA intron (NM_024512, intron 1 of 8) L1M4|LINE|L1 -2672 NR_073385 83598 Hs.570630 NR_073385 ENSG00000268324 LRRC2-AS1 LUZP3|LUZP3P|LUZPP1 LRRC2 antisense RNA 1 ncRNA 426-217 chr4 187106914 187107237 + 2 NA Intergenic Intergenic -94911 NR_147159 105377600 Hs.641158 NR_147159 LINC02374 - long intergenic non-protein coding RNA 2374 ncRNA 560-78 chr2 50859599 50860121 + 2 NA intron (NM_001330093, intron 4 of 22) (TG)n|Simple_repeat|Simple_repeat -163598 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 212-244 chr4 117614748 117614899 + 2 NA intron (NR_125757, intron 2 of 3) L1MA8|LINE|L1 186425 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 281-239 chr2 191208000 191208244 + 2 NA Intergenic L1ME4a|LINE|L1 -37282 NM_001330237 4430 Hs.439620 NM_012223 ENSG00000128641 MYO1B MMI-alpha|MMIa|MYH-1c|myr1 myosin IB protein-coding 855-42 chr5 179244231 179244728 + 2 NA intron (NM_014244, intron 3 of 21) L1M4b|LINE|L1 100982 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 218-189 chr20 53426542 53426697 + 2 NA intron (NM_173485, intron 2 of 2) intron (NM_173485, intron 2 of 2) -126151 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 119-51 chr6 48141348 48141422 + 2 NA Intergenic Intergenic -72696 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 541-92 chr17 70159987 70160393 + 2 NA Intergenic Intergenic 9212 NR_036534 400617 Hs.225661 NR_036534 ENSG00000267365 KCNJ2-AS1 - KCNJ2 antisense RNA 1 ncRNA 438-154 chr21 15163742 15164051 + 2 NA Intergenic L1MA9|LINE|L1 -98896 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 562-227 chr9 103774692 103775050 + 2 NA Intergenic L1PB4|LINE|L1 -224838 NR_109803 101928523 NR_109803 ENSG00000285483 LOC101928523 - uncharacterized LOC101928523 ncRNA 402-38 chr10 109291382 109291738 + 2 NA Intergenic Intergenic 631686 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 321-65 chr10 74309344 74309600 + 2 NA intron (NM_001369124, intron 3 of 9) intron (NM_001369124, intron 3 of 9) 132709 NM_001369124 132 Hs.656586 NM_001123 ENSG00000156110 ADK AK adenosine kinase protein-coding 323-178 chr16 59746223 59746449 + 2 NA Intergenic Intergenic 8855 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 129-33 chr2 39740215 39740294 + 2 NA intron (NR_135664, intron 11 of 11) L1ME4c|LINE|L1 39004 NM_025264 80745 Hs.468254 NM_025264 ENSG00000138050 THUMPD2 C2orf8 THUMP domain containing 2 protein-coding 315-162 chr15 97468870 97469029 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 52862 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 332-117 chr12 23354037 23354261 + 2 NA Intergenic X8_LINE|LINE|CR1 178513 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 461-149 chr2 217345773 217346158 + 2 NA intron (NR_026597, intron 8 of 12) L1PA13|LINE|L1 63232 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 344-361 chr4 104001636 104001889 + 2 NA Intergenic Intergenic -281777 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 356-301 chr22 17246277 17246610 + 2 NA Intergenic AluSx|SINE|Alu 20290 NR_038398 27442 Hs.517394 NR_038398 ENSG00000241832 CECR3 - cat eye syndrome chromosome region, candidate 3 ncRNA 365-50 chr10 65279886 65280249 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -291358 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 392-100 chr15 100164467 100164758 + 2 NA intron (NM_139057, intron 8 of 21) intron (NM_139057, intron 8 of 21) 177363 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 416-5 chr1 35265307 35265683 + 2 NA Intergenic Intergenic -3214 NM_001350140 9202 Hs.269211 NM_005095 ENSG00000146463 ZMYM4 CDIR|MYM|ZNF198L3|ZNF262 zinc finger MYM-type containing 4 protein-coding 249-51 chr10 61011079 61011265 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -5103 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 688-59 chr19 32279239 32279833 + 2 NA Intergenic L1ME2|LINE|L1 -66074 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 270-366 chr7 96450553 96450790 + 2 NA Intergenic Intergenic 52852 NR_163949 317-514 chr8 136302695 136302914 + 2 NA Intergenic Intergenic -227994 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 553-146 chr22 28507998 28508395 + 2 NA intron (NM_001145418, intron 2 of 22) L1PA11|LINE|L1 48327 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 306-208 chr18 64433785 64434024 + 2 NA Intergenic L1M4|LINE|L1 -173849 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 247-390 chr7 110972790 110972996 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) -118113 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 418-97 chr18 40755545 40755863 + 2 NA Intergenic Intergenic 689418 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 323-221 chr19 51219709 51219928 + 2 NA Intergenic L1PB4|LINE|L1 -5262 NM_001177608 945 Hs.83731 NM_001772 ENSG00000105383 CD33 SIGLEC-3|SIGLEC3|p67 CD33 molecule protein-coding 410-107 chr17 74482368 74482627 + 2 NA intron (NM_007261, intron 6 of 6) intron (NM_007261, intron 6 of 6) 15863 NM_007261 11314 Hs.9688 NM_007261 ENSG00000167851 CD300A CLM-8|CMRF-35-H9|CMRF-35H|CMRF35-H|CMRF35-H9|CMRF35H|CMRF35H9|IGSF12|IRC1|IRC1/IRC2|IRC2|IRp60 CD300a molecule protein-coding 552-182 chr5 163843783 163844172 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 338358 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 237-412 chrX 89141041 89141236 + 2 NA Intergenic Intergenic 393913 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 247-88 chr12 55436495 55436681 + 2 NA Intergenic L1ME1|LINE|L1 10334 NM_001005183 390326 Hs.553764 NM_001005183 ENSG00000185821 OR6C76 - olfactory receptor family 6 subfamily C member 76 protein-coding 417-71 chr13 94654452 94654744 + 2 NA Intergenic L1MC5|LINE|L1 52741 NM_180989 160897 Hs.439363 NM_180989 ENSG00000152749 GPR180 ITR G protein-coupled receptor 180 protein-coding 356-21 chr1 169442976 169443179 + 2 NA intron (NM_001300968, intron 2 of 6) intron (NM_001300968, intron 2 of 6) -15603 NM_021179 57821 Hs.567557 NM_021179 ENSG00000117477 CCDC181 C1orf114 coiled-coil domain containing 181 protein-coding 386-295 chr5 82486972 82487215 + 2 NA Intergenic Intergenic 207631 NM_001017971 92270 Hs.676227 NM_001017971 ENSG00000205464 ATP6AP1L - ATPase H+ transporting accessory protein 1 like protein-coding 554-5 chr1 45240085 45240525 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -33700 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 625-121 chr8 133220692 133221141 + 2 NA intron (NM_003882, intron 3 of 4) MIRc|SINE|MIR 29877 NM_001204869 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 601-52 chr17 13053537 13053957 + 2 NA Intergenic AluSx|SINE|Alu -35683 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 304-377 chr4 47948328 47948502 + 2 NA intron (NM_000087, intron 6 of 10) ERV3-16A3_I-int|LTR|ERVL 33118 NM_001142564 1259 Hs.1323 NM_000087 ENSG00000198515 CNGA1 CNCG|CNCG1|CNG-1|CNG1|RCNC1|RCNCa|RCNCalpha|RP49 cyclic nucleotide gated channel alpha 1 protein-coding 404-182 chr2 198674508 198674879 + 2 NA Intergenic Intergenic -299596 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 588-34 chr14 25902714 25903122 + 2 NA Intergenic Intergenic 650512 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 216-268 chr4 181755592 181755736 + 2 NA Intergenic Intergenic 74309 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 208-227 chr6 19268182 19268378 + 2 NA Intergenic Intergenic -87800 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 615-113 chr5 129310596 129311070 + 2 NA Intergenic L1PA3|LINE|L1 86314 NR_039665 100616325 NR_039665 ENSG00000265691 MIR4460 - microRNA 4460 ncRNA 285-449 chr9 24928161 24928379 + 2 NA Intergenic Intergenic -382373 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 380-362 chr7 36067951 36068236 + 2 NA Intergenic Intergenic -27217 NR_108089 101928618 Hs.561704 NR_108089 ENSG00000261184 LOC101928618 - uncharacterized LOC101928618 ncRNA 553-182 chr4 130334625 130335021 + 2 NA Intergenic LTR8|LTR|ERV1 -41538 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 317-246 chr2 125610316 125610494 + 2 NA Intergenic Intergenic 507580 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 365-361 chr6 130274141 130274419 + 2 NA intron (NM_001258275, intron 2 of 13) MER70B|LTR|ERVL -51329 NM_001017373 154075 Hs.440508 NM_152552 ENSG00000164483 SAMD3 - sterile alpha motif domain containing 3 protein-coding 207-109 chr18 2183981 2184151 + 2 NA Intergenic Intergenic 387439 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 350-180 chr17 61500172 61500486 + 2 NA Intergenic L1ME3A|LINE|L1 43841 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 365-90 chr12 17400020 17400347 + 2 NA Intergenic Intergenic 188895 NR_146522 105369678 NR_146522 LINC02378 - long intergenic non-protein coding RNA 2378 ncRNA 499-59 chr12 115726988 115727411 + 2 NA Intergenic MER121|DNA|hAT? 421455 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 375-191 chr19 33744936 33745235 + 2 NA intron (NM_001127895, intron 3 of 4) AluJr|SINE|Alu -51785 NM_024076 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 366-103 chr12 60482569 60482829 + 2 NA Intergenic Intergenic 793329 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 319-216 chr19 31392419 31392691 + 2 NA Intergenic Intergenic -43119 NR_138036 57616 Hs.278436 NM_020856 ENSG00000121297 TSHZ3 TSH3|ZNF537 teashirt zinc finger homeobox 3 protein-coding 439-178 chr3 35637222 35637655 + 2 NA Intergenic Intergenic -2087 NM_001267616 10777 Hs.475902 NM_016300 ENSG00000172995 ARPP21 ARPP-21|R3HDM3|RCS|TARPP cAMP regulated phosphoprotein 21 protein-coding 415-268 chr8 10922097 10922460 + 2 NA intron (NM_173683, intron 2 of 2) intron (NM_173683, intron 2 of 2) 82252 NR_125432 101929229 Hs.129800 NR_125432 LOC101929229 - uncharacterized LOC101929229 ncRNA 375-83 chr11 94062686 94062924 + 2 NA intron (NM_001098672, intron 2 of 19) intron (NM_001098672, intron 2 of 19) 41451 NM_001098672 341208 Hs.669645 NM_001098672 ENSG00000181333 HEPHL1 ZP hephaestin like 1 protein-coding 601-11 chr10 21826937 21827330 + 2 NA intron (NM_022365, intron 8 of 11) L1MB4|LINE|L1 176597 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 188-90 chr2 31792318 31792491 + 2 NA Intergenic L1MA8|LINE|L1 11576 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 624-49 chr16 79092792 79093301 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 507691 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 438-253 chr7 25277966 25278318 + 2 NA Intergenic Intergenic -49656 NM_022150 64111 Hs.60473 NM_022150 ENSG00000105954 NPVF C7orf9|RFRP neuropeptide VF precursor protein-coding 154-84 chr5 4355843 4355950 + 2 NA Intergenic Intergenic -417585 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 514-70 chr13 39554349 39554720 + 2 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 48659 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 326-234 chr2 32418177 32418404 + 2 NA intron (NM_016252, intron 10 of 73) MIR|SINE|MIR 61262 NM_016252 57448 Hs.150107 NM_016252 ENSG00000115760 BIRC6 APOLLON|BRUCE baculoviral IAP repeat containing 6 protein-coding 413-218 chr4 62843683 62844038 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie -682095 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 219-15 chr1 159567296 159567497 + 2 NA Intergenic L1MC2|LINE|L1 -20430 NM_001639 325 Hs.507080 NM_001639 ENSG00000132703 APCS HEL-S-92n|PTX2|SAP amyloid P component, serum protein-coding 200-295 chrX 97987412 97987575 + 2 NA Intergenic Intergenic -422958 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 211-54 chr11 101283318 101283467 + 2 NA Intergenic L1ME4b|LINE|L1 -153579 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 346-484 chr8 82089154 82089428 + 2 NA Intergenic Intergenic -247005 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 410-73 chr12 119957628 119957927 + 2 NA Intergenic LTR8A|LTR|ERV1 -31459 NM_001367886 92558 Hs.369763 NM_207311 ENSG00000135127 BICDL1 BICDR-1|BICDR1|CCDC64|CCDC64A|H_267D11.1 BICD family like cargo adaptor 1 protein-coding 430-283 chr7 46127116 46127351 + 2 NA Intergenic Intergenic -205961 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 259-58 chr10 91202616 91202793 + 2 NA intron (NM_001257101, intron 1 of 9) intron (NM_001257101, intron 1 of 9) -17447 NM_001256549 84333 Hs.500512 NM_032373 ENSG00000180628 PCGF5 RNF159 polycomb group ring finger 5 protein-coding 275-116 chr14 89087288 89087518 + 2 NA Intergenic MER113|DNA|hAT-Charlie 262752 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 515-19 chr10 19423707 19424056 + 2 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 304669 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 211-289 chr8 21481331 21481491 + 2 NA Intergenic Intergenic 183172 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 391-200 chr20 21622743 21623117 + 2 NA intron (NR_109878, intron 3 of 4) LTR50|LTR|ERVL 52906 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 285-160 chr18 4458050 4458245 + 2 NA Intergenic Intergenic -2840 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 407-105 chr17 10260110 10260446 + 2 NA Intergenic Intergenic -61672 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 503-242 chr6 62194987 62195433 + 2 NA intron (NR_146874, intron 1 of 13) L1M4|LINE|L1 91015 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 245-317 chr7 10262400 10262575 + 2 NA Intergenic Intergenic -440189 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 596-47 chr12 50947700 50948200 + 2 NA Intergenic AluSx1|SINE|Alu -4594 NM_001109619 613227 Hs.702849 NM_001109619 ENSG00000214511 HIGD1C GM921 HIG1 hypoxia inducible domain family member 1C protein-coding 224-251 chr5 55744585 55744774 + 2 NA intron (NM_024415, intron 2 of 21) intron (NM_024415, intron 2 of 21) 6618 NM_024415 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 347-250 chr2 186554875 186555205 + 2 NA Intergenic Intergenic -35016 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 289-201 chr19 52079080 52079262 + 2 NA intron (NM_001369827, intron 4 of 6) intron (NM_001369827, intron 4 of 6) 15100 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 212-13 chr1 154639694 154639842 + 2 NA Intergenic AluJb|SINE|Alu -11771 NM_001365046 103 Hs.12341 NM_001111 ENSG00000160710 ADAR ADAR1|AGS6|DRADA|DSH|DSRAD|G1P1|IFI-4|IFI4|K88DSRBP|P136 adenosine deaminase RNA specific protein-coding 338-297 chr20 40162224 40162457 + 2 NA Intergenic Intergenic 157879 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 258-28 chr1 197566922 197567081 + 2 NA intron (NM_144977, intron 15 of 15) intron (NM_144977, intron 15 of 15) 208479 NM_001195215 163486 Hs.125056 NM_019049 ENSG00000213047 DENND1B C1ORF18|C1orf218|FAM31B DENN domain containing 1B protein-coding 296-167 chr16 9513421 9513580 + 2 NA Intergenic Intergenic -57995 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 354-490 chr9 15341275 15341543 + 2 NA Intergenic AluJb|SINE|Alu -34049 NM_001168340 158219 Hs.563630 NM_152574 ENSG00000155158 TTC39B C9orf52 tetratricopeptide repeat domain 39B protein-coding 249-182 chr2 11723181 11723399 + 2 NA intron (NM_001261428, intron 2 of 21) intron (NM_001261428, intron 2 of 21) -1025 NM_001261427 23175 Hs.467740 NM_145693 ENSG00000134324 LPIN1 PAP1 lipin 1 protein-coding 317-537 chr9 112132446 112132718 + 2 NA intron (NM_022486, intron 5 of 16) intron (NM_022486, intron 5 of 16) 42715 NM_001282643 64420 Hs.494827 NM_022486 ENSG00000106868 SUSD1 - sushi domain containing 1 protein-coding 352-163 chr15 83843956 83844177 + 2 NA intron (NM_207517, intron 7 of 29) intron (NM_207517, intron 7 of 29) 189943 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 189-131 chr3 109008468 109008598 + 2 NA intron (NM_014429, intron 17 of 27) intron (NM_014429, intron 17 of 27) -54654 NM_005459 9626 Hs.233363 NM_005459 ENSG00000138472 GUCA1C GCAP3 guanylate cyclase activator 1C protein-coding 566-37 chr12 66642112 66642582 + 2 NA intron (NM_001366724, intron 1 of 23) L2c|LINE|L2 36729 NM_001178074 23426 Hs.505946 NM_021150 ENSG00000155974 GRIP1 FRASRS3|GRIP glutamate receptor interacting protein 1 protein-coding 238-180 chr2 105899194 105899373 + 2 NA Intergenic L1PA13|LINE|L1 47436 NM_001004720 8440 Hs.529244 NM_003581 ENSG00000071051 NCK2 GRB4|NCKbeta NCK adaptor protein 2 protein-coding 254-196 chr2 122355270 122355462 + 2 NA Intergenic L1M4|LINE|L1 599715 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 376-151 chr18 40279949 40280229 + 2 NA Intergenic Intergenic 213803 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 289-318 chr3 140622472 140622656 + 2 NA Intergenic L1MEf|LINE|L1 -55500 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 313-64 chr10 117637084 117637323 + 2 NA Intergenic Intergenic -92135 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 310-64 chr10 120070906 120071110 + 2 NA Intergenic LTR16A2|LTR|ERVL 112495 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 261-400 chr8 144916894 144917082 + 2 NA Intergenic AluY|SINE|Alu -14811 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 631-92 chr4 46613983 46614567 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -224147 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 364-120 chr14 19820054 19820332 + 2 NA intron (NM_001004723, intron 1 of 1) L1PA7|LINE|L1 16423 NM_001004723 390429 Hs.512490 NM_001004723 ENSG00000176294 OR4N2 OR14-13|OR14-8 olfactory receptor family 4 subfamily N member 2 protein-coding 284-35 chr10 53482790 53482952 + 2 NA Intergenic Intergenic -711171 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 193-171 chr6 45103803 45103959 + 2 NA intron (NM_001350327, intron 2 of 9) L1MEf|LINE|L1 93889 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 280-401 chr8 61747453 61747664 + 2 NA Intergenic Intergenic 32770 NR_039680 100616484 NR_039680 ENSG00000264408 MIR4470 mir-4470 microRNA 4470 ncRNA 664-105 chr7 41517559 41517988 + 2 NA Intergenic MIR|SINE|MIR -176146 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 432-66 chr12 113758451 113758732 + 2 NA intron (NR_110025, intron 1 of 1) MLT1D|LTR|ERVL-MaLR 15092 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 515-47 chr11 112368937 112369403 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 98421 NR_126004 283140 Hs.651827 NR_126004 ENSG00000250303 LINC02762 - long intergenic non-protein coding RNA 2762 ncRNA 331-166 chr14 87079940 87080208 + 2 NA Intergenic Intergenic 174296 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 319-405 chr5 35344296 35344525 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger -113923 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 381-361 chr7 81318551 81318831 + 2 NA Intergenic Intergenic 243128 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 533-83 chr17 71580478 71580836 + 2 NA Intergenic L1ME3A|LINE|L1 -378478 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 472-221 chr4 8873389 8873799 + 2 NA Intergenic CpG-21032 -1755 NM_018942 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 697-35 chr16 78298684 78299255 + 2 NA intron (NM_001291997, intron 4 of 7) (TTCTTC)n|Simple_repeat|Simple_repeat 199315 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 553-158 chr3 118665688 118666206 + 2 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 24179 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 390-115 chr15 45858418 45858657 + 2 NA intron (NR_135680, intron 2 of 4) intron (NR_135680, intron 2 of 4) 153342 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 317-241 chr2 111123226 111123513 + 2 NA intron (NM_001204109, intron 1 of 3) CpG-16420 2455 NM_001204107 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 386-76 chr12 34666805 34667075 + 2 NA Intergenic ALR/Alpha|Satellite|centr 644444 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 202-51 chr12 48022260 48022405 + 2 NA Intergenic Charlie4z|DNA|hAT-Charlie -17856 NM_001844 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 333-308 chr20 37588229 37588470 + 2 NA Intergenic L1MB7|LINE|L1 34770 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 139-15 chr11 37986823 37986953 + 2 NA Intergenic Intergenic 48287 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 311-378 chr4 69971619 69971775 + 2 NA Intergenic Intergenic -10686 NM_001891 1447 Hs.2242 NM_001891 ENSG00000135222 CSN2 CASB casein beta protein-coding 431-49 chr10 126864633 126864896 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -40645 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 699-16 chr11 50641961 50642370 + 2 NA Intergenic ALR/Alpha|Satellite|centr 233018 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 504-163 chr3 33503043 33503486 + 2 NA intron (NM_001365634, intron 34 of 35) L1M4|LINE|L1 -62859 NM_014517 7342 Hs.729120 NM_014517 ENSG00000153560 UBP1 LBP-1B|LBP-1a|LBP1A|LBP1B upstream binding protein 1 protein-coding 407-46 chr11 35573312 35573650 + 2 NA Intergenic L1MC3|LINE|L1 -43181 NM_001282675 25891 Hs.55044 NM_015430 ENSG00000149090 PAMR1 DKFZP586H2123|FP938|RAMP peptidase domain containing associated with muscle regeneration 1 protein-coding 309-197 chr17 14895962 14896116 + 2 NA Intergenic L1PB4|LINE|L1 -118766 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 139-29 chr14 68352944 68353042 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 275794 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 171-80 chr3 69342561 69342727 + 2 NA intron (NM_015123, intron 1 of 22) intron (NM_015123, intron 1 of 22) 43444 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 671-75 chr5 10048919 10049327 + 2 NA Intergenic Intergenic -145299 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 494-155 chr20 53491120 53491400 + 2 NA 3' UTR (NM_001193421, exon 3 of 3) 3' UTR (NM_001193421, exon 3 of 3) -61510 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 381-323 chr5 167229905 167230121 + 2 NA intron (NM_001122679, intron 1 of 29) L1MA4A|LINE|L1 -61612 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 225-277 chr5 45210159 45210327 + 2 NA Intergenic MER57A-int|LTR|ERV1 401296 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 190-31 chr11 124374663 124374825 + 2 NA Intergenic Intergenic 8599 NM_001005468 26595 Hs.576944 NM_001005468 ENSG00000284680 OR8B2 OR11-309|OR11-310 olfactory receptor family 8 subfamily B member 2 protein-coding 340-11 chr1 65098444 65098750 + 2 NA Intergenic AluJr|SINE|Alu -30851 NM_001321854 3716 Hs.207538 NM_002227 ENSG00000162434 JAK1 JAK1A|JAK1B|JTK3 Janus kinase 1 protein-coding 400-36 chr10 63858322 63858622 + 2 NA Intergenic Intergenic -336582 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 335-87 chr11 26354683 26355012 + 2 NA intron (NM_031418, intron 1 of 26) HAL1|LINE|L1 22717 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 422-48 chr11 88301277 88301655 + 2 NA intron (NM_001814, intron 4 of 6) MER51B|LTR|ERV1 36270 NM_148170 1075 Hs.128065 NM_001814 ENSG00000109861 CTSC CPPI|DPP-I|DPP1|DPPI|HMS|JP|JPD|PALS|PDON1|PLS cathepsin C protein-coding 327-207 chr18 2199712 2199937 + 2 NA Intergenic Intergenic 371681 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 170-70 chr2 68251282 68251389 + 2 NA intron (NM_000945, intron 1 of 5) intron (NM_000945, intron 1 of 5) 1197 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 623-47 chr17 62565789 62566325 + 2 NA intron (NM_001284363, intron 9 of 19) intron (NM_001284363, intron 9 of 19) -61613 NM_006039 9902 Hs.7835 NM_006039 ENSG00000011028 MRC2 CD280|CLEC13E|ENDO180|UPARAP mannose receptor C type 2 protein-coding 619-79 chr21 30945837 30946438 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie -64557 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 488-104 chr17 53596040 53596339 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -226738 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 568-36 chr12 44361972 44362363 + 2 NA intron (NM_001286211, intron 6 of 6) intron (NM_001286211, intron 6 of 6) 513494 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 193-87 chr19 27765384 27765514 + 2 NA Intergenic HSAT4|Satellite|centr -27982 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 347-183 chr18 9603341 9603684 + 2 NA intron (NM_001042388, intron 2 of 19) Charlie2b|DNA|hAT-Charlie 11047 NM_005134 9989 Hs.743236 NM_005134 ENSG00000154845 PPP4R1 MEG1|PP4(Rmeg)|PP4R1 protein phosphatase 4 regulatory subunit 1 protein-coding 371-268 chr4 31470245 31470507 + 2 NA Intergenic L1PB4|LINE|L1 -36168 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 222-150 chr18 60072805 60072961 + 2 NA Intergenic Intergenic 172887 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 542-117 chr20 34993889 34994419 + 2 NA exon (NM_020884, exon 27 of 45) exon (NM_020884, exon 27 of 45) -3682 NR_039912 100616134 NR_039912 ENSG00000283441 MIR499B MIR499A|hsa-mir-499b microRNA 499b ncRNA 396-347 chr8 56673237 56673471 + 2 NA Intergenic L1ME3F|LINE|L1 -113531 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 518-306 chr8 135064267 135064600 + 2 NA Intergenic Intergenic -169698 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 395-351 chr9 786615 786904 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -54938 NM_021951 1761 Hs.98586 NM_021951 ENSG00000137090 DMRT1 CT154|DMT1 doublesex and mab-3 related transcription factor 1 protein-coding 372-425 chr6 24144963 24145191 + 2 NA intron (NM_080723, intron 3 of 3) (AT)n|Simple_repeat|Simple_repeat 18862 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 222-337 chr7 32384577 32384738 + 2 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 43567 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 276-443 chr8 53557247 53557411 + 2 NA Intergenic AluSx4|SINE|Alu -33364 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 391-256 chr4 45537677 45538034 + 2 NA Intergenic AluSz|SINE|Alu 586199 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 380-59 chr11 11050493 11050713 + 2 NA Intergenic L1MDa|LINE|L1 192386 NR_034137 729013 Hs.726427 NR_034137 ENSG00000247271 ZBED5-AS1 - ZBED5 antisense RNA 1 ncRNA 495-170 chr4 26371834 26372178 + 2 NA intron (NM_203284, intron 2 of 11) MIRb|SINE|MIR 50778 NM_001363577 3516 Hs.479396 NM_005349 ENSG00000168214 RBPJ AOS3|CBF1|IGKJRB|IGKJRB1|KBF2|RBP-J|RBPJK|RBPSUH|SUH|csl recombination signal binding protein for immunoglobulin kappa J region protein-coding 469-16 chr1 161498381 161498690 + 2 NA Intergenic MER33|DNA|hAT-Charlie -6922 NM_001136219 2212 Hs.352642 NM_021642 ENSG00000143226 FCGR2A CD32|CD32A|CDw32|FCG2|FCGR2|FCGR2A1|FcGR|IGFR2 Fc fragment of IgG receptor IIa protein-coding 231-388 chrX 117624063 117624215 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 349599 NM_033495 90293 Hs.348262 NM_033495 ENSG00000003096 KLHL13 BKLHD2 kelch like family member 13 protein-coding 274-140 chr15 60723710 60723951 + 2 NA intron (NM_134261, intron 1 of 10) L2a|LINE|L2 42261 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 476-79 chr14 47094330 47094684 + 2 NA intron (NM_001113498, intron 6 of 16) intron (NM_001113498, intron 6 of 16) 248739 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 404-273 chr6 56420670 56420946 + 2 NA Intergenic Intergenic -26680 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 501-247 chr7 89212328 89212674 + 2 NA intron (NM_181646, intron 1 of 3) MER34C_|LTR|ERV1 -416764 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 197-163 chr5 12369053 12369202 + 2 NA Intergenic Intergenic -205730 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 331-296 chr2 177991717 177991979 + 2 NA intron (NM_001077197, intron 3 of 20) intron (NM_001077197, intron 3 of 20) -69011 NM_001077358 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 289-95 chr12 13684532 13684721 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 295730 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 311-242 chr2 37443981 37444136 + 2 NA Intergenic Intergenic 99428 NM_012413 25797 Hs.79033 NM_012413 ENSG00000115828 QPCT GCT|QC|sQC glutaminyl-peptide cyclotransferase protein-coding 236-384 chr9 80763347 80763518 + 2 NA Intergenic Intergenic 788409 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 219-251 chr4 22975648 22975809 + 2 NA Intergenic L1MA4A|LINE|L1 261639 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 204-213 chr4 45179502 45179660 + 2 NA Intergenic Intergenic -452947 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 519-89 chr19 15149276 15149672 + 2 NA Intergenic AluSx1|SINE|Alu -23688 NM_006844 10994 Hs.78880 NM_006844 ENSG00000105135 ILVBL 209L8|AHAS|HACL1L|ILV2H ilvB acetolactate synthase like protein-coding 350-230 chr2 100504918 100505161 + 2 NA Intergenic L1MC1|LINE|L1 34557 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 181-34 chr12 58411475 58411638 + 2 NA Intergenic Intergenic -180146 NR_126341 100506869 Hs.290456 NR_126341 ENSG00000258231 LOC100506869 - uncharacterized LOC100506869 ncRNA 222-251 chr3 169397471 169397645 + 2 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) -50309 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 209-295 chr7 41165850 41166031 + 2 NA Intergenic Intergenic 64336 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 663 chr1 10418101 10418609 + 2 NA intron (NM_001304451, intron 9 of 11) MER75|DNA|PiggyBac -12078 NM_001270517 100526739 Hs.412311 NM_198544 ENSG00000251503 CENPS-CORT APITD1|APITD1-CORT|CENP-S|CENPS|FAAP16|MHF1 CENPS-CORT readthrough protein-coding 393-378 chr8 141910798 141911106 + 2 NA Intergenic L2|LINE|L2 -124639 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 204-68 chr12 128224112 128224300 + 2 NA Intergenic LTR51|LTR|ERV1 -43197 NM_001136103 92293 Hs.49599 NM_001136103 ENSG00000181234 TMEM132C PPP1R152 transmembrane protein 132C protein-coding 195-77 chr16 61034418 61034575 + 2 NA Intergenic Intergenic 21270 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 314-222 chr17 34916520 34916778 + 2 NA Intergenic MIR|SINE|MIR 44811 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 259-55 chr10 81684850 81685055 + 2 NA Intergenic HAL1M8|LINE|L1 -190242 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 317-450 chr7 37889180 37889378 + 2 NA intron (NM_016616, intron 15 of 17) L1MC4|LINE|L1 27538 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 420-36 chr10 65140232 65140599 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -215897 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 731-20 chr12 8453827 8454349 + 2 NA Intergenic MER34B|LTR|ERV1 -1874 NM_001007033 93978 Hs.591147 NM_001007033 ENSG00000205846 CLEC6A CLEC4N|CLECSF10|dectin-2 C-type lectin domain containing 6A protein-coding 313-46 chr10 60144398 60144619 + 2 NA intron (NM_001204403, intron 24 of 43) intron (NM_001204403, intron 24 of 43) -3492 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 480-239 chr5 114156506 114156950 + 2 NA Intergenic L1PA13|LINE|L1 -205342 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 405-29 chr10 43489830 43490090 + 2 NA Intergenic L1MEc|LINE|L1 52849 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 401-41 chr10 92892175 92892382 + 2 NA intron (NM_001319195, intron 1 of 21) MER77|LTR|ERVL 43758 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 295-134 chr14 73001080 73001318 + 2 NA intron (NM_021260, intron 2 of 11) intron (NM_021260, intron 2 of 11) -14243 NM_178441 53349 Hs.335106 NM_021260 ENSG00000165861 ZFYVE1 DFCP1|PPP1R172|SR3|TAFF1|ZNFN2A1 zinc finger FYVE-type containing 1 protein-coding 284-208 chr2 126942042 126942245 + 2 NA Intergenic MER34D|LTR|ERV1 43253 NR_136239 101929926 Hs.98984 NM_001322244 ENSG00000237524 TEX51 - testis expressed 51 protein-coding 433-209 chr4 133095086 133095395 + 2 NA non-coding (NR_125885, exon 9 of 9) non-coding (NR_125885, exon 9 of 9) 53876 NR_125885 101927359 Hs.649960 NR_125885 ENSG00000250241 LOC101927359 - uncharacterized LOC101927359 ncRNA 309-520 chr7 94409835 94410094 + 2 NA intron (NM_000089, intron 19 of 51) intron (NM_000089, intron 19 of 51) 15403 NM_000089 1278 Hs.489142 NM_000089 ENSG00000164692 COL1A2 EDSARTH2|EDSCV|OI4 collagen type I alpha 2 chain protein-coding 329-361 chr3 53898095 53898295 + 2 NA Intergenic L1ME4a|LINE|L1 -6336 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 378-93 chr11 114354746 114355082 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 25125 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 440-47 chr12 40863523 40863818 + 2 NA intron (NM_001256064, intron 1 of 15) MER1B|DNA|hAT-Charlie 35732 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 348-59 chr10 66831735 66832025 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -94156 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 384-62 chr11 99832858 99833178 + 2 NA intron (NM_001243270, intron 3 of 23) intron (NM_001243270, intron 3 of 23) 276873 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 215-345 chrX 51662492 51662654 + 2 NA Intergenic L1MC2|LINE|L1 20258 NM_001355278 441495 Hs.187774 NM_001355278 ENSG00000283093 CENPVL2 CENPVP2 centromere protein V like 2 protein-coding 313-568 chrX 44980407 44980575 + 2 NA intron (NR_111960, intron 4 of 27) L1MD|LINE|L1 107316 NM_001291417 7403 Hs.522616 NM_021140 ENSG00000147050 KDM6A KABUK2|UTX|bA386N14.2 lysine demethylase 6A protein-coding 220-186 chr2 177719457 177719609 + 2 NA intron (NM_001077197, intron 13 of 20) intron (NM_001077197, intron 13 of 20) 46211 NR_136171 105373764 Hs.666361 NR_136171 ENSG00000229941 LOC105373764 - uncharacterized LOC105373764 ncRNA 275-385 chr9 91703218 91703427 + 2 NA Intergenic L1MA9|LINE|L1 -66977 NR_037489 100500902 NR_037489 ENSG00000283351 MIR3910-2 mir-3910-2 microRNA 3910-2 ncRNA 321-507 chr6 131993612 131993838 + 2 NA Intergenic Intergenic -42353 NM_001901 1490 Hs.410037 NM_001901 ENSG00000118523 CCN2 CTGF|HCS24|IGFBP8|NOV2 cellular communication network factor 2 protein-coding 383-273 chr4 33695719 33695930 + 2 NA Intergenic Intergenic 344069 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 377-400 chr8 77701778 77702128 + 2 NA Intergenic Intergenic 251256 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 481-63 chr12 5980980 5981282 + 2 NA intron (NM_000552, intron 42 of 51) L2a|LINE|L2 -34899 NM_001278597 57101 Hs.148970 NM_020373 ENSG00000047617 ANO2 C12orf3|TMEM16B anoctamin 2 protein-coding 390-421 chr9 92057252 92057593 + 2 NA intron (NM_001368273, intron 8 of 15) L1ME4a|LINE|L1 57991 NM_006415 10558 Hs.90458 NM_006415 ENSG00000090054 SPTLC1 HSAN1|HSN1|LBC1|LCB1|SPT1|SPTI serine palmitoyltransferase long chain base subunit 1 protein-coding 447-34 chr10 105627958 105628321 + 2 NA Intergenic Intergenic 192194 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 252-331 chr5 52290801 52290989 + 2 NA Intergenic Intergenic 282864 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 198-183 chr4 98514727 98514878 + 2 NA intron (NM_005723, intron 1 of 7) L2a|LINE|L2 143809 NM_005723 10098 Hs.118118 NM_005723 ENSG00000168785 TSPAN5 NET-4|NET4|TM4SF9|TSPAN-5 tetraspanin 5 protein-coding 283-277 chr22 42033273 42033538 + 2 NA Intergenic MER52A|LTR|ERV1 34617 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 284-45 chr10 72982668 72982928 + 2 NA Intergenic L1M4|LINE|L1 -27992 NM_001318124 84647 Hs.333175 NM_032562 ENSG00000138308 PLA2G12B FKSG71|GXIIB|GXIIIsPLA2|PLA2G13|sPLA2-GXIIB phospholipase A2 group XIIB protein-coding 390-123 chr16 8158137 8158454 + 2 NA Intergenic Intergenic 431543 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 377-101 chr13 20046721 20047054 + 2 NA intron (NM_197968, intron 12 of 24) intron (NM_197968, intron 12 of 24) -55814 NR_126380 104355137 Hs.578016 NR_126380 ENSG00000236076 LINC01072 - long intergenic non-protein coding RNA 1072 ncRNA 226-144 chr19 34823636 34823823 + 2 NA intron (NR_033982, intron 4 of 5) L1MC2|LINE|L1 9140 NR_033982 400685 Hs.730118 NR_033982 ENSG00000267767 LINC01801 - long intergenic non-protein coding RNA 1801 ncRNA 212-47 chr10 82063066 82063225 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 169775 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 262-411 chr7 127075818 127076035 + 2 NA intron (NM_001371085, intron 3 of 10) L2b|LINE|L2 -17742 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 303-112 chr13 103386997 103387274 + 2 NA Intergenic Intergenic -38065 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 553-46 chr12 38593584 38593970 + 2 NA Intergenic Intergenic 277003 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 499-249 chr7 88650851 88651270 + 2 NA Intergenic L1MA3|LINE|L1 -108640 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 303-323 chr4 86877133 86877367 + 2 NA intron (NM_144645, intron 4 of 4) intron (NM_144645, intron 4 of 4) 15172 NM_001369889 132989 Hs.339646 NM_144645 ENSG00000163633 C4orf36 - chromosome 4 open reading frame 36 protein-coding 457-252 chr8 58929877 58930226 + 2 NA intron (NM_014729, intron 3 of 8) intron (NM_014729, intron 3 of 8) 189096 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 288-464 chr8 138552681 138552890 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -55055 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 438-217 chr5 53671985 53672373 + 2 NA intron (NR_134474, intron 5 of 5) intron (NR_134474, intron 5 of 5) 111540 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 342-176 chr16 35941066 35941362 + 2 NA Intergenic ALR/Alpha|Satellite|centr 194662 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 205-200 chr4 46259597 46259734 + 2 NA intron (NM_001286827, intron 8 of 9) intron (NM_001286827, intron 8 of 9) 129714 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 252-184 chr2 49425726 49425906 + 2 NA Intergenic Intergenic -271289 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 501-121 chr2 188407948 188408303 + 2 NA intron (NM_016315, intron 2 of 11) MSTC|LTR|ERVL-MaLR 110633 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 522-157 chr20 31225399 31225741 + 2 NA Intergenic Intergenic -32094 NM_001037730 245929 Hs.580793 NM_001037730 ENSG00000215547 DEFB115 DEFB-15 defensin beta 115 protein-coding 508-239 chr8 105012320 105012746 + 2 NA Intergenic L1ME3C|LINE|L1 -305905 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 555-63 chr16 5680432 5680916 + 2 NA Intergenic L2c|LINE|L2 48207 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 335-558 chr9 9274421 9274749 + 2 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 416567 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 192-102 chr2 116411062 116411246 + 2 NA Intergenic Intergenic 1067339 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 307-433 chr6 128798539 128798815 + 2 NA Intergenic L1MD2|LINE|L1 -84461 NM_001079823 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 503-179 chr20 58937092 58937471 + 2 NA Intergenic L1M4|LINE|L1 -43975 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 466-23 chr1 244838435 244838845 + 2 NA intron (NM_001312872, intron 2 of 4) L2a|LINE|L2 2982 NM_198076 116228 Hs.411490 NM_198076 ENSG00000203667 COX20 FAM36A cytochrome c oxidase assembly factor COX20 protein-coding 501-133 chr20 40774123 40774546 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -59711 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 198-213 chr6 43592148 43592281 + 2 NA intron (NM_006502, intron 4 of 10) intron (NM_006502, intron 4 of 10) 16029 NM_001291970 5429 Hs.655467 NM_006502 ENSG00000170734 POLH RAD30|RAD30A|XP-V|XPV DNA polymerase eta protein-coding 230-297 chr5 61639615 61639811 + 2 NA intron (NR_126525, intron 1 of 1) MER53|DNA|hAT 1932 NR_126524 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 277-202 chr2 97732230 97732433 + 2 NA intron (NM_001079, intron 4 of 13) intron (NM_001079, intron 4 of 13) -2075 NM_207519 7535 Hs.234569 NM_001079 ENSG00000115085 ZAP70 ADMIO2|IMD48|SRK|STCD|STD|TZK|ZAP-70 zeta chain of T cell receptor associated protein kinase 70 protein-coding 240-354 chr5 85773386 85773529 + 2 NA Intergenic MIR|SINE|MIR -508987 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 146-53 chr3 4392528 4392618 + 2 NA intron (NM_001164674, intron 6 of 7) L1M4a1|LINE|L1 74696 NM_182760 285362 Hs.350475 NM_182760 ENSG00000144455 SUMF1 AAPA3037|FGE|UNQ3037 sulfatase modifying factor 1 protein-coding 453-44 chr11 114113334 114113720 + 2 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 50316 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 339-35 chr1 181738224 181738420 + 2 NA intron (NM_001205293, intron 23 of 47) intron (NM_001205293, intron 23 of 47) 254805 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 599-120 chr6 155661261 155661736 + 2 NA Intergenic Intergenic 146654 NR_134597 105378068 Hs.131541 NR_134596 LOC105378068 - uncharacterized LOC105378068 ncRNA 242-215 chr20 40297037 40297213 + 2 NA Intergenic L1ME3C|LINE|L1 292664 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 389-185 chr2 136648224 136648459 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -117204 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 269-288 chr4 99432226 99432485 + 2 NA intron (NM_000673, intron 1 of 8) L1PA15|LINE|L1 2779 NM_001166504 131 Hs.389 NM_000673 ENSG00000196344 ADH7 ADH4 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide protein-coding 413-242 chr5 105158690 105159030 + 2 NA Intergenic Intergenic 59386 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 510-205 chr4 61669724 61670145 + 2 NA intron (NM_001371343, intron 5 of 23) intron (NM_001371343, intron 5 of 23) 467762 NM_001371342 265-193 chr2 122572313 122572572 + 2 NA Intergenic Intergenic 501039 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 258-82 chr12 26786568 26786743 + 2 NA intron (NM_002223, intron 2 of 56) intron (NM_002223, intron 2 of 56) 46539 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 580-20 chr10 79462818 79463384 + 2 NA Intergenic L2|LINE|L2 -17477 NM_153367 219654 Hs.523080 NM_153367 ENSG00000165424 ZCCHC24 C10orf56|Z3CXXC8 zinc finger CCHC-type containing 24 protein-coding 375-282 chr4 45897354 45897578 + 2 NA Intergenic Intergenic 226588 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 303-91 chr12 37288596 37288782 + 2 NA Intergenic ALR/Alpha|Satellite|centr -1028085 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 294-432 chr7 29491922 29492114 + 2 NA intron (NM_001293081, intron 1 of 6) L1MEd|LINE|L1 8202 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 392-235 chr4 106752713 106752988 + 2 NA Intergenic L1MEg|LINE|L1 283463 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 581-170 chr8 81312284 81312696 + 2 NA Intergenic Intergenic 31954 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 601-80 chr2 153835894 153836332 + 2 NA Intergenic Intergenic -35809 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 353-515 chr8 52822223 52822495 + 2 NA Intergenic Intergenic -107893 NM_001083617 9821 Hs.196102 NM_014781 ENSG00000023287 RB1CC1 ATG17|CC1|FIP200|PPP1R131 RB1 inducible coiled-coil 1 protein-coding 317-542 chrX 10546450 10546734 + 2 NA intron (NM_033289, intron 2 of 9) intron (NM_033289, intron 2 of 9) 21011 NM_001193281 4281 Hs.27695 NM_000381 ENSG00000101871 MID1 BBBG1|FXY|GBBB1|MIDIN|OGS1|OS|OSX|RNF59|TRIM18|XPRF|ZNFXY midline 1 protein-coding 285-223 chr2 172159463 172159636 + 2 NA Intergenic L1MB1|LINE|L1 56543 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 334-251 chr2 33855457 33855714 + 2 NA intron (NR_126403, intron 1 of 5) MSTD|LTR|ERVL-MaLR -127368 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 154-39 chr17 59339296 59339396 + 2 NA intron (NM_001005404, intron 1 of 4) intron (NM_001005404, intron 1 of 4) 7691 NM_001005404 388403 Hs.463613 NM_001005404 ENSG00000175155 YPEL2 FKSG4 yippee like 2 protein-coding 361-105 chr12 58251838 58252125 + 2 NA Intergenic Intergenic 164089 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 460-93 chr15 96202255 96202621 + 2 NA intron (NR_125738, intron 2 of 4) L2a|LINE|L2 -74597 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 349-36 chr1 217116892 217117150 + 2 NA intron (NM_001134285, intron 1 of 8) MIRb|SINE|MIR 20681 NM_001243510 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 432-123 chr2 49786572 49786855 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 187490 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 321-208 chr16 13485649 13485836 + 2 NA Intergenic L1MA4|LINE|L1 -434415 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 320-271 chr2 115314906 115315177 + 2 NA intron (NM_001321909, intron 2 of 24) intron (NM_001321909, intron 2 of 24) 5804 NM_020868 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 337-159 chr14 72526899 72527115 + 2 NA intron (NM_001370288, intron 15 of 16) intron (NM_001370288, intron 15 of 16) 10187 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 232-297 chr5 29023063 29023243 + 2 NA Intergenic LTR53-int|LTR|ERVL -42091 NR_109948 101929645 Hs.531878 NR_109948 LOC101929645 - uncharacterized LOC101929645 ncRNA 328-418 chr4 116825444 116825671 + 2 NA Intergenic L1M5|LINE|L1 260019 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 318-554 chr8 126951706 126951930 + 2 NA Intergenic (GTTT)n|Simple_repeat|Simple_repeat -61336 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 583 chr1 34964925 34965438 + 2 NA Intergenic L1MEg|LINE|L1 13525 NR_037869 653160 Hs.533986 NR_037869 ENSG00000241014 LOC653160 - uncharacterized LOC653160 ncRNA 373-387 chr7 71934170 71934436 + 2 NA intron (NM_001363460, intron 4 of 5) intron (NM_001363460, intron 4 of 5) 403088 NM_001017440 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 378-196 chr18 58524460 58524804 + 2 NA intron (NM_052947, intron 6 of 12) (TGA)n|Simple_repeat|Simple_repeat -73480 NR_039899 100616357 NR_039899 ENSG00000207778 MIR3591 - microRNA 3591 ncRNA 230-266 chr4 69821391 69821575 + 2 NA Intergenic Intergenic 38662 NM_005420 6783 Hs.479898 NM_005420 ENSG00000109193 SULT1E1 EST|EST-1|ST1E1|STE sulfotransferase family 1E member 1 protein-coding 480-47 chr11 80933594 80933939 + 2 NA Intergenic Intergenic -170963 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 318-327 chr21 17546166 17546371 + 2 NA intron (NM_001207066, intron 1 of 7) intron (NM_001207066, intron 1 of 7) 33225 NM_001207065 1525 Hs.627078 NM_001338 ENSG00000154639 CXADR CAR|CAR4/6|HCAR CXADR Ig-like cell adhesion molecule protein-coding 316-361 chr3 106766172 106766343 + 2 NA Intergenic LTR101_Mam|LTR|ERVL 474381 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 259-395 chr8 83223976 83224126 + 2 NA Intergenic Intergenic -179707 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 157-17 chr10 41857664 41857785 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 510321 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 333-586 chr8 120602714 120602945 + 2 NA intron (NM_021021, intron 3 of 6) intron (NM_021021, intron 3 of 6) 157410 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 543-58 chr12 3912872 3913245 + 2 NA Intergenic AluJr|SINE|Alu -39610 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 311-246 chr2 49988335 49988551 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -14240 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 321-106 chr11 95491427 95491719 + 2 NA Intergenic L1PA16|LINE|L1 -259098 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 478-317 chrX 54853127 54853538 + 2 NA Intergenic L1MA8|LINE|L1 38962 NR_002953 677799 Hs.679783 NR_002953 ENSG00000221716 SNORA11 SNORA11A|U107 small nucleolar RNA, H/ACA box 11 snoRNA 235-176 chr2 84732042 84732223 + 2 NA intron (NM_001370, intron 61 of 76) L1M4b|LINE|L1 148952 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 287-451 chrX 74706722 74706904 + 2 NA Intergenic L1MDa|LINE|L1 -92189 NM_016120 51132 Hs.653288 NM_016120 ENSG00000131263 RLIM MRX61|NY-REN-43|RNF12|TOKAS ring finger protein, LIM domain interacting protein-coding 388-122 chr16 31636814 31637158 + 2 NA Intergenic L1MC3|LINE|L1 -63627 NR_024034 100132341 Hs.715792 NM_024048 ENSG00000131797 CLUHP3 C16orf67|KIAA0664L3|KIAA0664P3|URLC3 clustered mitochondria homolog pseudogene 3 pseudo 384-13 chr1 93374112 93374367 + 2 NA Intergenic L1MA3|LINE|L1 28332 NM_001938 1810 Hs.348418 NM_001938 ENSG00000117505 DR1 NC2|NC2-BETA|NC2B|NCB2 down-regulator of transcription 1 protein-coding 595-67 chr17 49422612 49423049 + 2 NA Intergenic L1MA4A|LINE|L1 -7925 NM_001281715 5245 Hs.514303 NM_002634 ENSG00000167085 PHB HEL-215|HEL-S-54e|PHB1 prohibitin protein-coding 355-160 chr14 82510427 82510683 + 2 NA Intergenic MER66D|LTR|ERV1 -132077 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 145-32 chr15 72039356 72039439 + 2 NA intron (NM_006901, intron 2 of 41) Charlie29a|DNA|hAT-Charlie -74861 NM_001166340 123228 Hs.513002 NM_145204 ENSG00000166192 SENP8 DEN1|NEDP1|PRSC2 SUMO peptidase family member, NEDD8 specific protein-coding 512-290 chr9 76831965 76832471 + 2 NA intron (NM_001308048, intron 4 of 17) L1MEg|LINE|L1 67782 NR_132313 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 738-76 chrX 64485848 64486365 + 2 NA Intergenic L1PA5|LINE|L1 -90654 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 241-291 chr5 22753656 22753833 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 99600 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 169-33 chr14 19932986 19933146 + 2 NA Intergenic Intergenic -2542 NM_001004063 79544 Hs.554584 NM_001004063 ENSG00000155249 OR4K1 OR14-19 olfactory receptor family 4 subfamily K member 1 protein-coding 503-100 chr14 66837643 66837972 + 2 NA intron (NM_001024218, intron 4 of 21) intron (NM_001024218, intron 4 of 21) 330400 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 328-255 chr2 50940931 50941134 + 2 NA intron (NM_004801, intron 2 of 21) THE1D|LTR|ERVL-MaLR 91100 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 259-152 chr16 28047904 28048049 + 2 NA intron (NM_001109763, intron 1 of 6) AluJr|SINE|Alu 15738 NM_001109763 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 406-231 chr5 63318939 63319159 + 2 NA Intergenic Intergenic 643243 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 344-261 chr2 199827493 199827756 + 2 NA intron (NM_001363886, intron 3 of 4) A-rich|Low_complexity|Low_complexity 23549 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 295-241 chr2 209588266 209588548 + 2 NA intron (NM_001039538, intron 3 of 14) intron (NM_001039538, intron 3 of 14) 8728 NM_031845 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 321-429 chr4 92099814 92100082 + 2 NA Intergenic Intergenic 177354 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 677-73 chr7 384410 384812 + 2 NA Intergenic L1MD2|LINE|L1 5186 NR_033960 442497 Hs.704269 NR_033960 ENSG00000249574 LOC442497 - uncharacterized LOC442497 ncRNA 426-235 chr5 54800536 54800841 + 2 NA Intergenic LTR16E2|LTR|ERVL -56430 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 530-31 chr10 82934272 82934726 + 2 NA intron (NR_163253, intron 6 of 10) intron (NR_163253, intron 6 of 10) -701579 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 327-297 chr20 46865175 46865357 + 2 NA Intergenic Intergenic -29358 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 244-140 chr19 20005266 20005486 + 2 NA 3' UTR (NM_033196, exon 4 of 4) 3' UTR (NM_033196, exon 4 of 4) 33879 NM_001077349 91120 Hs.306298 NM_033196 ENSG00000197124 ZNF682 BC39498_3 zinc finger protein 682 protein-coding 415-287 chr8 101361443 101361856 + 2 NA Intergenic MIRb|SINE|MIR -7244 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 220-305 chr5 153185785 153185901 + 2 NA Intergenic Intergenic -213494 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 317-331 chr4 8733632 8733890 + 2 NA Intergenic Arthur1|DNA|hAT-Tip100 138078 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 334-378 chr4 59706335 59706657 + 2 NA Intergenic Intergenic 692923 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 301-218 chr2 112798693 112798900 + 2 NA Intergenic AluJr4|SINE|Alu -13398 NM_000575 3552 Hs.1722 NM_000575 ENSG00000115008 IL1A IL-1A|IL1|IL1-ALPHA|IL1F1 interleukin 1 alpha protein-coding 231-308 chr6 54421957 54422169 + 2 NA Intergenic L1MA9|LINE|L1 113622 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 646-123 chr8 33931365 33931713 + 2 NA Intergenic Intergenic -331433 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 179-107 chr7 34602486 34602625 + 2 NA intron (NR_033664, intron 2 of 4) HSMAR2|DNA|TcMar-Mariner -55663 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 278-10 chr1 102408334 102408500 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -411183 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 496-229 chr6 15718512 15718793 + 2 NA Intergenic Intergenic -55594 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 195-85 chr17 76448068 76448238 + 2 NA intron (NM_022066, intron 1 of 17) intron (NM_022066, intron 1 of 17) 4999 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 258-332 chr5 121591147 121591348 + 2 NA Intergenic L1PA15|LINE|L1 -260635 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 274-302 chr5 18746539 18746704 + 2 NA Intergenic HERVL-int|LTR|ERVL 939347 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 370-108 chr12 16692632 16692938 + 2 NA Intergenic L1MA6|LINE|L1 -84571 NR_045014 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 356-187 chr17 425370 425719 + 2 NA Intergenic AluSz|SINE|Alu -11521 NR_136407 105371430 Hs.616427 NR_136407 ENSG00000241525 LOC105371430 - uncharacterized LOC105371430 ncRNA 263-257 chr3 67069841 67070003 + 2 NA Intergenic Intergenic 71615 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 247-152 chr17 17930849 17931018 + 2 NA intron (NM_001288787, intron 1 of 13) L4_C_Mam|LINE|RTE-X 41467 NM_001350331 146691 Hs.462379 NM_144678 ENSG00000175662 TOM1L2 - target of myb1 like 2 membrane trafficking protein protein-coding 319-510 chr7 106640819 106641041 + 2 NA Intergenic MER91C|DNA|hAT-Tip100 20228 NM_175884 168455 Hs.29692 NM_175884 ENSG00000253276 CCDC71L C7orf74 coiled-coil domain containing 71 like protein-coding 544-55 chr12 42945774 42946158 + 2 NA Intergenic Intergenic -209349 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 480-233 chr5 45130839 45131191 + 2 NA Intergenic Intergenic 322068 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 207-121 chr19 40028187 40028345 + 2 NA TTS (NM_001005851) TTS (NM_001005851) 27965 NM_001005851 163131 Hs.101139 NM_001005851 ENSG00000128000 ZNF780B ZNF779 zinc finger protein 780B protein-coding 336-322 chr20 40361734 40361994 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 327372 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 412-322 chr8 59131672 59132069 + 2 NA Intergenic Intergenic 12660 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 264-407 chr8 40076685 40076927 + 2 NA Intergenic L1MEd|LINE|L1 -76676 NM_020130 56892 Hs.591849 NM_020130 ENSG00000176907 TCIM C8orf4|TC-1|TC1 transcriptional and immune response regulator protein-coding 235-82 chr12 29633342 29633516 + 2 NA intron (NM_175861, intron 5 of 17) intron (NM_175861, intron 5 of 17) -133736 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 239-232 chr3 27597720 27597854 + 2 NA Intergenic Intergenic -113403 NM_001321104 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 550-187 chr5 140583290 140583731 + 2 NA Intergenic L1MB5|LINE|L1 -18906 NM_133174 10307 Hs.529449 NM_006051 ENSG00000113108 APBB3 FE65L2|SRA amyloid beta precursor protein binding family B member 3 protein-coding 393-81 chr13 61450131 61450339 + 2 NA Intergenic Intergenic -22289 NR_134946 101926951 Hs.732367 NR_134946 ENSG00000279797 LINC02339 - long intergenic non-protein coding RNA 2339 ncRNA 365-383 chr7 98962816 98963137 + 2 NA intron (NM_003496, intron 45 of 70) intron (NM_003496, intron 45 of 70) -50189 NR_110102 101927550 Hs.636663 NR_110102 LOC101927550 - uncharacterized LOC101927550 ncRNA 254-53 chr11 22807358 22807555 + 2 NA intron (NR_147085, intron 10 of 10) intron (NR_147085, intron 10 of 10) 21923 NR_135213 258010 Hs.349096 NM_148893 ENSG00000198168 SVIP - small VCP interacting protein protein-coding 327-463 chr7 82656901 82657123 + 2 NA Intergenic Intergenic -213056 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 294-293 chr3 54614372 54614564 + 2 NA intron (NM_018398, intron 9 of 37) intron (NM_018398, intron 9 of 37) 25389 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 538-84 chr16 77749561 77749850 + 2 NA Intergenic Intergenic 27191 NM_001105663 283927 Hs.282665 NM_001105663 ENSG00000140876 NUDT7 - nudix hydrolase 7 protein-coding 538-95 chr18 66110469 66110793 + 2 NA Intergenic Intergenic 359619 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 585-171 chr9 79716584 79716956 + 2 NA intron (NM_001351563, intron 12 of 17) L2a|LINE|L2 -107760 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 212-175 chr2 166362096 166362306 + 2 NA intron (NM_001365536, intron 1 of 26) intron (NM_001365536, intron 1 of 26) 13743 NM_001365536 6335 Hs.439145 NM_002977 ENSG00000169432 SCN9A ETHA|FEB3B|GEFSP7|HSAN2D|NE-NA|NENA|Nav1.7|PN1|SFNP sodium voltage-gated channel alpha subunit 9 protein-coding 361-230 chr2 116760834 116761047 + 2 NA Intergenic Intergenic -1053751 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 530-35 chr10 113821819 113822230 + 2 NA Intergenic Intergenic 32058 NM_014881 9937 Hs.1560 NM_014881 ENSG00000198924 DCLRE1A PSO2|SNM1|SNM1A DNA cross-link repair 1A protein-coding 271-470 chr9 1372966 1373165 + 2 NA Intergenic Intergenic 321578 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 493-139 chr2 52020110 52020526 + 2 NA intron (NR_135237, intron 7 of 10) MIRb|SINE|MIR -350330 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 411-256 chr6 90175030 90175365 + 2 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 121646 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 480-164 chr2 209240811 209241228 + 2 NA Intergenic L1MB1|LINE|L1 -183028 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 199-44 chr11 107079788 107079939 + 2 NA Intergenic L1ME1|LINE|L1 -61387 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 428-109 chr19 37658255 37658627 + 2 NA Intergenic Intergenic -2180 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 326-393 chr5 9871566 9871884 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) 17348 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 271-411 chr7 84032556 84032740 + 2 NA intron (NM_006080, intron 6 of 16) intron (NM_006080, intron 6 of 16) 162141 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 675-59 chr3 75055250 75055780 + 2 NA Intergenic Intergenic -158961 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 515-261 chr8 48451789 48452196 + 2 NA Intergenic Intergenic -99575 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 328-35 chr1 217203348 217203605 + 2 NA Intergenic L1MA3|LINE|L1 -65774 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 248-265 chr4 16773178 16773343 + 2 NA intron (NM_001304435, intron 1 of 7) MER1A|DNA|hAT-Charlie 125385 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 298-214 chr2 58871904 58872181 + 2 NA intron (NR_033873, intron 3 of 13) intron (NR_033873, intron 3 of 13) -345666 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 451-63 chr14 50764754 50765063 + 2 NA intron (NM_016350, intron 14 of 28) L1MB7|LINE|L1 -56889 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 364-345 chr5 55833272 55833540 + 2 NA Intergenic Intergenic -17951 NM_001242637 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 384-391 chr8 142185924 142186205 + 2 NA Intergenic L2c|LINE|L2 9725 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 1082-4 chr14 87569443 87570359 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 85393 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 267-281 chr4 15874611 15874792 + 2 NA Intergenic MIR3|SINE|MIR 64039 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 304-199 chr17 70693976 70694223 + 2 NA Intergenic L1PREC2|LINE|L1 508080 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 481-126 chr19 21287575 21287968 + 2 NA Intergenic L1MA8|LINE|L1 41639 NM_021269 7562 Hs.466296 NM_021269 ENSG00000182141 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 291-53 chr10 65611690 65611943 + 2 NA intron (NR_120647, intron 2 of 5) intron (NR_120647, intron 2 of 5) 40391 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 348-6 chr1 58427741 58427934 + 2 NA Intergenic L2|LINE|L2 118889 NM_145243 115209 Hs.425769 NM_145243 ENSG00000162600 OMA1 2010001O09Rik|DAB1|MPRP-1|MPRP1|YKR087C|ZMPOMA1|peptidase OMA1 zinc metallopeptidase protein-coding 562-128 chr21 19077411 19077835 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -317811 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 554-64 chr12 115580725 115581153 + 2 NA Intergenic MIR|SINE|MIR 567715 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 285-84 chr12 30887099 30887356 + 2 NA Intergenic L1M2a|LINE|L1 -39521 NM_001370302 441631 Hs.505141 NM_001080509 ENSG00000110900 TSPAN11 VSSW1971 tetraspanin 11 protein-coding 188-204 chr8 103542655 103542832 + 2 NA intron (NM_001348497, intron 1 of 22) L1MA8|LINE|L1 -40833 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 571-33 chr12 15103338 15103700 + 2 NA Intergenic L1ME1|LINE|L1 -48404 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 253-257 chr3 62514407 62514588 + 2 NA intron (NM_183394, intron 16 of 27) intron (NM_183394, intron 16 of 27) -140947 NM_018008 55079 Hs.241523 NM_018008 ENSG00000153266 FEZF2 FEZ|FEZL|FKSG36|TOF|ZFP312|ZNF312 FEZ family zinc finger 2 protein-coding 234-218 chr21 14247301 14247472 + 2 NA Intergenic Intergenic -26413 NR_003087 150000 Hs.366575 NM_138726 ENSG00000243064 ABCC13 ABCC13P|C21orf73|PRED6 ATP binding cassette subfamily C member 13 (pseudogene) pseudo 358-357 chr5 4496265 4496537 + 2 NA Intergenic L1PA2|LINE|L1 -277080 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 292-370 chr6 8449511 8449754 + 2 NA intron (NR_038980, intron 2 of 4) L1ME1|LINE|L1 14009 NR_038979 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 459-129 chr2 24903857 24904234 + 2 NA intron (NM_001320613, intron 2 of 21) intron (NM_001320613, intron 2 of 21) 16192 NM_004036 109 Hs.467898 NM_004036 ENSG00000138031 ADCY3 AC-III|AC3|BMIQ19 adenylate cyclase 3 protein-coding 380-49 chr10 82464638 82464960 + 2 NA intron (NR_163253, intron 3 of 10) intron (NR_163253, intron 3 of 10) -231879 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 612-150 chr9 35264792 35265281 + 2 NA intron (NM_006377, intron 7 of 38) MLT1A-int|LTR|ERVL-MaLR -76860 NM_001371188 208-261 chr8 74142739 74142891 + 2 NA Intergenic Intergenic 151423 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 268-359 chr7 7917703 7917890 + 2 NA Intergenic L2b|LINE|L2 50956 NR_110018 100505921 Hs.634989 NR_110018 LOC100505921 - uncharacterized LOC100505921 ncRNA 425-58 chr11 84509270 84509679 + 2 NA intron (NM_001142699, intron 7 of 27) L1MA8|LINE|L1 -192135 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 314-422 chr4 56662035 56662252 + 2 NA intron (NM_032495, intron 1 of 3) intron (NM_032495, intron 1 of 3) -5621 NM_139211 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 214-159 chr2 52178305 52178444 + 2 NA intron (NR_135237, intron 7 of 10) MER57-int|LTR|ERV1 -192274 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 329-24 chr1 178513125 178513398 + 2 NA intron (NM_001170722, intron 1 of 8) intron (NM_001170722, intron 1 of 8) 152 NM_001170723 84066 Hs.534501 NM_032126 ENSG00000240021 TEX35 C1orf49|TSC24 testis expressed 35 protein-coding 655-128 chr8 123847346 123847788 + 2 NA Intergenic Intergenic -4420 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 252-8 chr1 81709801 81709971 + 2 NA intron (NM_001297704, intron 1 of 20) intron (NM_001297704, intron 1 of 20) 10116 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 286-345 chr5 22687691 22687853 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 165572 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 288-159 chr18 52058681 52058909 + 2 NA Intergenic L1MEc|LINE|L1 -281402 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 271-270 chr3 82306193 82306456 + 2 NA intron (NR_147146, intron 3 of 8) L1M3b|LINE|L1 320182 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 230-183 chr2 149932320 149932493 + 2 NA Intergenic Intergenic -73215 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 495-26 chr10 52312165 52312495 + 2 NA intron (NR_038277, intron 2 of 5) intron (NR_038277, intron 2 of 5) 1798 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 238-432 chrX 86827771 86827950 + 2 NA intron (NM_001139514, intron 11 of 11) intron (NM_001139514, intron 11 of 11) 564892 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 206-101 chr19 37823332 37823443 + 2 NA TTS (NR_040015) TTS (NR_040015) 5976 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 332-204 chr17 71228782 71228999 + 2 NA Intergenic Intergenic -26711 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 347-85 chr12 1731296 1731571 + 2 NA intron (NM_024551, intron 1 of 7).2 L1MB4|LINE|L1 40363 NM_024551 79602 Hs.371642 NM_024551 ENSG00000006831 ADIPOR2 ACDCR2|PAQR2 adiponectin receptor 2 protein-coding 213-68 chr12 31667973 31668154 + 2 NA 3' UTR (NM_001135863, exon 4 of 4) 3' UTR (NM_001135863, exon 4 of 4) 8375 NM_001135863 254013 Hs.740628 NM_173802 ENSG00000139160 ETFBKMT C12orf72|ETFB-KMT|METTL20 electron transfer flavoprotein subunit beta lysine methyltransferase protein-coding 297-16 chr1 88290039 88290327 + 2 NA Intergenic Intergenic -393961 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 509-106 chr19 44484337 44484727 + 2 NA intron (NM_001288759, intron 2 of 4) intron (NM_001288759, intron 2 of 4) 15990 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 493-105 chr17 33796185 33796583 + 2 NA intron (NM_001094, intron 1 of 9) MIRb|SINE|MIR -262624 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 302-11 chr1 94940389 94940553 + 2 NA intron (NR_033998, intron 2 of 3) MSTD|LTR|ERVL-MaLR 12443 NR_033998 729970 Hs.297988 NR_033998 ENSG00000235501 LOC729970 - hCG2028352-like ncRNA 217-401 chrX 91278566 91278761 + 2 NA Intergenic LTR25-int|LTR|ERV1 -156176 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 278-392 chr7 37760927 37761086 + 2 NA Intergenic L1MA9|LINE|L1 77240 NM_181791 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 312-457 chr6 113739526 113739799 + 2 NA Intergenic Intergenic -89587 NR_125844 101927686 Hs.402044 NR_125844 ENSG00000230943 LINC02541 - long intergenic non-protein coding RNA 2541 ncRNA 241-364 chr7 33999175 33999378 + 2 NA intron (NM_133468, intron 7 of 15) intron (NM_133468, intron 7 of 15) 93737 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 214-260 chr5 39456036 39456206 + 2 NA Intergenic LTR85b|LTR|Gypsy? -30888 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 329-266 chr2 33877203 33877406 + 2 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -149087 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 348-395 chr5 19476991 19477257 + 2 NA intron (NM_001349559, intron 12 of 12) intron (NM_001349559, intron 12 of 12) 409148 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 399-75 chr12 132944293 132944613 + 2 NA intron (NM_001164715, intron 2 of 4) L4_A_Mam|LINE|RTE-X 11853 NM_001164715 100289635 Hs.29698 NM_183238 ENSG00000196458 ZNF605 - zinc finger protein 605 protein-coding 200-165 chr22 46999341 46999501 + 2 NA intron (NM_001284305, intron 10 of 12) intron (NM_001284305, intron 10 of 12) -83379 NR_122047 642757 Hs.632786 NR_122047 ENSG00000280080 TBC1D22A-AS1 - TBC1D22A antisense RNA 1 ncRNA 389-14 chr1 104175714 104175941 + 2 NA Intergenic L1M4b|LINE|L1 102804 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 389-239 chr3 110093677 110093910 + 2 NA Intergenic L2a|LINE|L2 490965 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 331-264 chr2 54921097 54921303 + 2 NA intron (NM_001039753, intron 25 of 40) L1MA9|LINE|L1 89072 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 219-237 chr3 89621818 89621945 + 2 NA Intergenic Intergenic 514260 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 221-23 chr1 192533515 192533717 + 2 NA Intergenic L2a|LINE|L2 -42157 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 319-10 chr1 79598483 79598751 + 2 NA Intergenic L2a|LINE|L2 -591887 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 352-337 chr3 161147572 161147816 + 2 NA Intergenic MER4B|LTR|ERV1 -42322 NM_001349159 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 202-271 chr9 73411834 73411977 + 2 NA Intergenic Intergenic 260040 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 212-60 chr11 30211489 30211696 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -19422 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 404-63 chr11 80220764 80221101 + 2 NA Intergenic L1MA5|LINE|L1 541871 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 482-275 chr8 111124570 111124948 + 2 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) -97326 NR_125416 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 278-468 chrX 113793111 113793297 + 2 NA intron (NR_131204, intron 1 of 2) intron (NR_131204, intron 1 of 2) 145014 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 434-77 chr13 107401421 107401730 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) -80612 NR_145739 109616978 NR_145739 ENSG00000201847 SNORD31B - small nucleolar RNA, C/D box 31B snoRNA 282-424 chr7 49569823 49570020 + 2 NA Intergenic L1M4|LINE|L1 -203717 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 482-237 chr7 12237034 12237509 + 2 NA 3' UTR (NM_018374, exon 9 of 9) 3' UTR (NM_018374, exon 9 of 9) 25977 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 146-81 chr6 159545183 159545290 + 2 NA Intergenic Intergenic 148005 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 714-38 chr2 142407462 142407931 + 2 NA Intergenic Intergenic -275995 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 293-247 chr22 47985293 47985493 + 2 NA Intergenic L1MB7|LINE|L1 -288971 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 216-128 chr16 74176852 74176996 + 2 NA Intergenic Intergenic 38597 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 343-468 chr6 63845381 63845554 + 2 NA intron (NM_001292009, intron 36 of 43) intron (NM_001292009, intron 36 of 43) 38631 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 343-198 chr17 68983846 68984107 + 2 NA intron (NM_080283, intron 35 of 38) intron (NM_080283, intron 35 of 38) -20738 NR_126414 104355297 Hs.569827 NR_126414 ENSG00000231749 ABCA9-AS1 - ABCA9 antisense RNA 1 ncRNA 341-300 chr20 43803305 43803539 + 2 NA Intergenic L1MB7|LINE|L1 -76420 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 521-189 chr5 26365646 26366076 + 2 NA Intergenic L1MA4A|LINE|L1 672725 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 402-269 chr5 45402164 45402408 + 2 NA intron (NM_021072, intron 3 of 7) L2|LINE|L2 294094 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 269-187 chr2 40616048 40616293 + 2 NA Intergenic MamRep1527|LTR|LTR -103735 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 342-286 chr20 42671837 42672091 + 2 NA intron (NM_133170, intron 7 of 31) L2b|LINE|L2 -13519 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 385-235 chr3 21706832 21707041 + 2 NA intron (NM_024697, intron 1 of 7) intron (NM_024697, intron 1 of 7) 44274 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 318-342 chr22 35212210 35212391 + 2 NA intron (NR_126356, intron 1 of 5) intron (NR_126356, intron 1 of 5) 18756 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 268-373 chr7 54623796 54623989 + 2 NA Intergenic L1MB4|LINE|L1 66922 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 375-49 chr10 53010538 53010824 + 2 NA Intergenic Intergenic -238981 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 357-4 chr1 34367804 34368011 + 2 NA Intergenic L1ME3G|LINE|L1 191000 NM_001134734 84970 Hs.194610 NM_032884 ENSG00000142698 C1orf94 - chromosome 1 open reading frame 94 protein-coding 135-19 chr14 66371122 66371227 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -115197 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 377-202 chr2 67196270 67196576 + 2 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -16985 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 253-220 chr20 17208047 17208214 + 2 NA Intergenic MIRb|SINE|MIR -17977 NM_001201528 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 393-31 chr1 247894794 247895004 + 2 NA promoter-TSS (NM_001001957) promoter-TSS (NM_001001957) -688 NM_001001957 343171 Hs.269151 NM_001001957 ENSG00000238243 OR2W3 OR2W3P|OR2W8P|OST718 olfactory receptor family 2 subfamily W member 3 protein-coding 340-441 chr5 45947166 45947463 + 2 NA Intergenic ALR/Alpha|Satellite|centr -250934 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 247-66 chr11 91791975 91792150 + 2 NA Intergenic Intergenic -432972 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 547-25 chr10 111887498 111887874 + 2 NA Intergenic Intergenic 296079 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 650-121 chr7 84904614 84905090 + 2 NA Intergenic Intergenic 217079 NM_152754 223117 Hs.201340 NM_152754 ENSG00000153993 SEMA3D Sema-Z2|coll-2 semaphorin 3D protein-coding 660-97 chr7 45963124 45963523 + 2 NA Intergenic Intergenic -42051 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 575-105 chr20 48227780 48228250 + 2 NA Intergenic AluSq|SINE|Alu -131896 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 277-142 chr16 72660286 72660539 + 2 NA intron (NR_159372, intron 1 of 7) L1MB7|LINE|L1 4558 NR_126330 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 270-50 chr11 7341516 7341716 + 2 NA intron (NM_175733, intron 3 of 6) THE1B|LTR|ERVL-MaLR 89712 NM_175733 143425 Hs.177193 NM_175733 ENSG00000170743 SYT9 - synaptotagmin 9 protein-coding 498-285 chr8 139698043 139698400 + 2 NA intron (NR_104210, intron 1 of 3) MIR|SINE|MIR 4902 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 351-49 chr10 107790542 107790843 + 2 NA Intergenic L1MCc|LINE|L1 278601 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 351-354 chr4 89812756 89813099 + 2 NA intron (NM_001146054, intron 4 of 5) intron (NM_001146054, intron 4 of 5) -23474 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 144-30 chr15 95405416 95405501 + 2 NA Intergenic Intergenic -27635 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 292-163 chr16 59381013 59381166 + 2 NA Intergenic LTR40a|LTR|ERVL 374102 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 366-476 chrX 5488603 5488959 + 2 NA Intergenic Intergenic -737577 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 250-199 chr2 51187682 51187865 + 2 NA intron (NR_135237, intron 2 of 10) MER39|LTR|ERV1 155172 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 552-99 chr2 43430286 43430732 + 2 NA intron (NM_001083953, intron 26 of 37) intron (NM_001083953, intron 26 of 37) 165465 NM_001083953 63892 Hs.369592 NM_022065 ENSG00000115970 THADA ARMC13|GITA THADA armadillo repeat containing protein-coding 292-480 chrX 134647613 134647811 + 2 NA intron (NM_001316887, intron 2 of 3) intron (NM_001316887, intron 2 of 3) 10759 NM_021796 10761 Hs.496811 NM_021796 ENSG00000170965 PLAC1 CT92|OOSP2B|OOSP2L placenta enriched 1 protein-coding 150-42 chr15 91662247 91662376 + 2 NA Intergenic Intergenic -191397 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 422-108 chr16 72758124 72758455 + 2 NA Intergenic L1M4c|LINE|L1 -93319 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 130-81 chr7 126845452 126845536 + 2 NA intron (NM_001371085, intron 6 of 10) intron (NM_001371085, intron 6 of 10) 212690 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 335-135 chr12 133202497 133202764 + 2 NA exon (NM_001165882, exon 6 of 6) exon (NM_001165882, exon 6 of 6) 21135 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 506-275 chr8 54328821 54329211 + 2 NA Intergenic L2a|LINE|L2 -1670 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 351-433 chr7 12053411 12053624 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -157777 NM_001134232 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 269-232 chr21 27242492 27242689 + 2 NA Intergenic Ricksha_c|DNA|MULE-MuDR -275502 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 312-463 chr6 153878955 153879244 + 2 NA Intergenic LTR16E2|LTR|ERVL -131397 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 215-151 chr2 84645975 84646134 + 2 NA intron (NM_001370, intron 33 of 76) Tigger1|DNA|TcMar-Tigger 129599 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 305-412 chr4 169989345 169989548 + 2 NA 3' UTR (NM_001301647, exon 2 of 2) 3' UTR (NM_001301647, exon 2 of 2) -13544 NR_037878 100506085 Hs.649173 NR_037878 ENSG00000248319 LINC02275 - long intergenic non-protein coding RNA 2275 ncRNA 369-309 chr4 189300057 189300358 + 2 NA Intergenic L2a|LINE|L2 -359399 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 144-109 chr9 101909215 101909333 + 2 NA Intergenic L1ME1|LINE|L1 -170694 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 261-39 chr10 61574456 61574620 + 2 NA Intergenic Intergenic -88391 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 782-56 chr5 173409757 173410475 + 2 NA Intergenic Intergenic 62661 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 336-518 chr7 55898673 55898922 + 2 NA intron (NM_182633, intron 1 of 6) L1MA7|LINE|L1 11341 NM_182633 349075 Hs.660834 NM_182633 ENSG00000178665 ZNF713 - zinc finger protein 713 protein-coding 562-118 chr2 168991169 168991608 + 2 NA intron (NM_003742, intron 8 of 27) intron (NM_003742, intron 8 of 27) 39936 NM_003742 8647 Hs.158316 NM_003742 ENSG00000073734 ABCB11 ABC16|BRIC2|BSEP|PFIC-2|PFIC2|PGY4|SPGP ATP binding cassette subfamily B member 11 protein-coding 333-63 chr10 80389262 80389489 + 2 NA Intergenic MIRb|SINE|MIR -18454 NM_001243779 84293 Hs.500333 NM_032333 ENSG00000122378 PRXL2A Adrx|C10orf58|FAM213A|PAMM peroxiredoxin like 2A protein-coding 411-192 chr3 166093748 166094064 + 2 NA Intergenic L1MA3|LINE|L1 -256483 NM_000055 590 Hs.420483 NM_000055 ENSG00000114200 BCHE BCHED|CHE1|CHE2|E1 butyrylcholinesterase protein-coding 366-412 chr7 55940965 55941290 + 2 NA 3' UTR (NM_001366796, exon 7 of 7) 3' UTR (NM_001366796, exon 7 of 7) -10750 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 342-224 chr2 22868102 22868340 + 2 NA Intergenic Intergenic 331742 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 238-423 chr9 100697369 100697562 + 2 NA Intergenic MER63C|DNA|hAT-Blackjack 119386 NM_001018116 347273 Hs.99004 NM_001018116 ENSG00000170681 CAVIN4 MURC|cavin-4 caveolae associated protein 4 protein-coding 499-281 chr9 28050414 28050891 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -476786 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 251-89 chr14 41763034 41763257 + 2 NA intron (NM_001346173, intron 1 of 4) intron (NM_001346173, intron 1 of 4) 156289 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 934-15 chr17 61648567 61649214 + 2 NA Intergenic L1ME3A|LINE|L1 -57671 NM_199290 342538 Hs.591178 NM_199290 ENSG00000253506 NACA2 ANAC|NACAL nascent polypeptide associated complex subunit alpha 2 protein-coding 335-162 chr14 69222239 69222543 + 2 NA intron (NR_034165, intron 4 of 10) L2|LINE|L2 30625 NM_001193363 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 656-8 chr1 171830899 171831437 + 2 NA Intergenic Intergenic -10330 NM_001350205 26052 Hs.654775 NM_015569 ENSG00000197959 DNM3 Dyna III dynamin 3 protein-coding 327-406 chr5 89251528 89251765 + 2 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -347541 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 665-27 chr13 83518627 83519216 + 2 NA Intergenic Intergenic 363472 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 519-154 chr4 19769475 19769941 + 2 NA Intergenic Intergenic -482197 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 464-52 chr13 93013942 93014267 + 2 NA Intergenic L1MEd|LINE|L1 -31237 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 206-94 chr17 34747306 34747477 + 2 NA Intergenic L1ME1|LINE|L1 166642 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 576-99 chr20 54144489 54145060 + 2 NA Intergenic Intergenic 29212 NM_001128915 1591 Hs.89663 NM_000782 ENSG00000019186 CYP24A1 CP24|CYP24|HCAI|HCINF1|P450-CC24 cytochrome P450 family 24 subfamily A member 1 protein-coding 680-32 chr13 90675556 90676046 + 2 NA Intergenic Intergenic 182513 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 298-123 chr14 70883624 70883790 + 2 NA Intergenic Intergenic -23752 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 330-299 chr2 167518925 167519171 + 2 NA Intergenic Intergenic -299624 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 318-198 chr16 65159115 65159297 + 2 NA intron (NR_110918, intron 3 of 3) L1MA4|LINE|L1 17367 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 259-34 chr1 246833476 246833681 + 2 NA Intergenic MER74B|LTR|ERVL 43961 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 257-150 chr17 69811499 69811717 + 2 NA intron (NR_109972, intron 3 of 4) intron (NR_109972, intron 3 of 4) -150099 NR_110875 102723487 Hs.451409 NR_110874 ENSG00000237560 LINC01497 - long intergenic non-protein coding RNA 1497 ncRNA 426-11 chr1 161307613 161308018 + 2 NA intron (NM_001315491, intron 1 of 5) L1ME3G|LINE|L1 2153 NM_001315491 4359 Hs.591486 NM_000530 ENSG00000158887 MPZ CHM|CHN2|CMT1|CMT1B|CMT2I|CMT2J|CMT4E|CMTDI3|CMTDID|DSS|HMSNIB|MPP|P0 myelin protein zero protein-coding 278-235 chr2 173148296 173148479 + 2 NA intron (NM_133646, intron 2 of 11) intron (NM_133646, intron 2 of 11) 72541 NM_133646 51776 Hs.444451 NM_016653 ENSG00000091436 MAP3K20 AZK|CNM6|MLK7|MLT|MLTK|MLTKalpha|MLTKbeta|MRK|SFMMP|ZAK|mlklak|pk mitogen-activated protein kinase kinase kinase 20 protein-coding 390-417 chr9 80583779 80584009 + 2 NA Intergenic Intergenic 608871 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 170-64 chr19 51769837 51769991 + 2 NA 3' UTR (NM_001005738, exon 2 of 2) 3' UTR (NM_001005738, exon 2 of 2) 6525 NM_001462 2358 Hs.99855 NM_001462 ENSG00000171049 FPR2 ALXR|FMLP-R-II|FMLPX|FPR2A|FPRH1|FPRH2|FPRL1|HM63|LXA4R formyl peptide receptor 2 protein-coding 241-157 chr18 55657549 55657763 + 2 NA Intergenic Intergenic -21699 NM_001243226 6925 Hs.605153 NM_003199 ENSG00000196628 TCF4 E2-2|FECD3|ITF-2|ITF2|PTHS|SEF-2|SEF2|SEF2-1|SEF2-1A|SEF2-1B|SEF2-1D|TCF-4|bHLHb19 transcription factor 4 protein-coding 472-177 chr2 204701854 204702278 + 2 NA intron (NM_205863, intron 2 of 21) L1PA16|LINE|L1 156591 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 218-80 chr13 34962775 34962950 + 2 NA intron (NM_015678, intron 1 of 57) intron (NM_015678, intron 1 of 57) 20575 NM_015678 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 381-31 chr1 230892752 230893000 + 2 NA Intergenic AluSz6|SINE|Alu 18030 NR_110681 101927604 Hs.638929 NR_110681 ENSG00000223393 LOC101927604 - uncharacterized LOC101927604 ncRNA 126-56 chr5 113546343 113546418 + 2 NA intron (NM_001345975, intron 9 of 28) L3|LINE|CR1 32686 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 366-126 chr14 59066152 59066382 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -122400 NM_001270520 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 131-13 chr10 112714258 112714347 + 2 NA intron (NM_001365713, intron 8 of 8) L2a|LINE|L2 80132 NR_036177 100422909 NR_036177 ENSG00000264763 MIR4295 - microRNA 4295 ncRNA 291-459 chr8 96721063 96721225 + 2 NA intron (NM_016134, intron 1 of 7) intron (NM_016134, intron 1 of 7) 75902 NM_016134 10404 Hs.156178 NM_016134 ENSG00000104324 CPQ LDP|PGCP carboxypeptidase Q protein-coding 300-380 chr5 171981698 171981925 + 2 NA intron (NM_012300, intron 1 of 12) L1ME2|LINE|L1 25062 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 274-202 chr2 53379422 53379654 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -388245 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 284-259 chr3 51306149 51306367 + 2 NA intron (NM_004947, intron 27 of 52) L1M4|LINE|L1 -79033 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 683-83 chr8 5023471 5024065 + 2 NA Intergenic L1MCb|LINE|L1 -28854 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 244-300 chr5 46141561 46141710 + 2 NA Intergenic ALR/Alpha|Satellite|centr -445255 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 269-169 chr18 77796082 77796330 + 2 NA Intergenic L1MDa|LINE|L1 197521 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 244-346 chr7 53548879 53549015 + 2 NA Intergenic Intergenic 262984 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 430-146 chr2 101219492 101219744 + 2 NA Intergenic AluSx1|SINE|Alu -33268 NM_017546 55571 Hs.744080 NM_017546 ENSG00000158435 CNOT11 C2orf29|C40 CCR4-NOT transcription complex subunit 11 protein-coding 184-45 chr12 62891837 62891931 + 2 NA intron (NM_020700, intron 1 of 9) Kanga1|DNA|TcMar-Tc2 43266 NM_020700 57460 Hs.435479 NM_020700 ENSG00000111110 PPM1H ARHCL1|NERPP-2C|URCC2 protein phosphatase, Mg2+/Mn2+ dependent 1H protein-coding 320-245 chr2 2495002 2495307 + 2 NA Intergenic Intergenic -163879 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 318-481 chr6 94109203 94109414 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 391005 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 315-441 chr7 46235300 46235521 + 2 NA Intergenic L1MD1|LINE|L1 -314138 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 226-276 chr5 30859015 30859184 + 2 NA Intergenic Intergenic -334587 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 341-109 chr12 21380222 21380542 + 2 NA TTS (NM_000415) TTS (NM_000415) 7480 NM_000415 3375 Hs.46835 NM_000415 ENSG00000121351 IAPP DAP|IAP islet amyloid polypeptide protein-coding 326-225 chr2 7753244 7753495 + 2 NA Intergenic MLT1H2-int|LTR|ERVL-MaLR 146286 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 319-528 chr8 76610684 76610935 + 2 NA TTS (NR_024360) TTS (NR_024360) -70438 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 329-483 chr5 170683138 170683313 + 2 NA intron (NM_001278340, intron 2 of 8) MIR|SINE|MIR -1755 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 318-383 chr4 20041882 20042136 + 2 NA Intergenic Intergenic -209896 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 557-215 chr9 27834427 27834805 + 2 NA Intergenic L1PA10|LINE|L1 -260750 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 287-363 chr6 121539753 121539964 + 2 NA Intergenic Intergenic 104212 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 263-37 chr10 9920812 9921055 + 2 NA Intergenic MIR|SINE|MIR -137789 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 232-397 chr9 38463226 38463393 + 2 NA Intergenic L1ME1|LINE|L1 -38855 NM_001007563 347252 Hs.349705 NM_001007563 ENSG00000137142 IGFBPL1 IGFBP-RP4|IGFBPRP4|bA113O24.1 insulin like growth factor binding protein like 1 protein-coding 295-330 chr4 53375516 53375732 + 2 NA Intergenic L2c|LINE|L2 -2017 NM_030917 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 295-112 chr13 33069074 33069304 + 2 NA Intergenic Intergenic 52766 NM_004795 9365 Hs.524953 NM_004795 ENSG00000133116 KL HFTC3 klotho protein-coding 232-220 chr21 15949745 15949885 + 2 NA Intergenic L1PA13|LINE|L1 -120673 NR_136542 388815 Hs.473394 NR_027790 MIR99AHG C21orf34|C21orf35|LINC00478|MONC mir-99a-let-7c cluster host gene ncRNA 222-110 chr14 51218935 51219108 + 2 NA Intergenic Intergenic -21226 NM_030755 81542 Hs.125221 NM_030755 ENSG00000139921 TMX1 PDIA11|TMX|TXNDC|TXNDC1 thioredoxin related transmembrane protein 1 protein-coding 325-177 chr15 24966012 24966191 + 2 NA intron (NM_001349454, intron 7 of 13) MER21C|LTR|ERVL 11109 NM_001349465 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 318-456 chr5 124911162 124911436 + 2 NA Intergenic Intergenic -125532 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 813-12 chr14 84719471 84720087 + 2 NA Intergenic L1PA16|LINE|L1 -552153 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 533-41 chr12 112697001 112697440 + 2 NA intron (NM_001347952, intron 1 of 21) L1M5|LINE|L1 -2044 NR_031631 100302227 NR_031631 ENSG00000283507 MIR1302-1 MIRN1302-1|hsa-mir-1302-1 microRNA 1302-1 ncRNA 165-111 chr6 103662138 103662271 + 2 NA Intergenic L1MEf|LINE|L1 1197342 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 288-55 chr10 83159115 83159357 + 2 NA Intergenic HAL1M8|LINE|L1 517853 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 247-271 chr3 106882880 106883015 + 2 NA Intergenic L1MA10|LINE|L1 357691 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 158-12 chr10 17223683 17223770 + 2 NA intron (NR_108060, intron 1 of 3) intron (NR_108060, intron 1 of 3) 3172 NR_108060 100507347 Hs.740502 NR_108060 ENSG00000229124 VIM-AS1 - VIM antisense RNA 1 ncRNA 194-183 chr6 60681935 60682121 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -892102 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 142-74 chr7 109184822 109184920 + 2 NA Intergenic L1MEd|LINE|L1 -300284 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 556-103 chr2 98322805 98323244 + 2 NA Intergenic L1M4a1|LINE|L1 -23131 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 329-528 chr7 16214148 16214411 + 2 NA intron (NR_038946, intron 1 of 4) intron (NR_038946, intron 1 of 4) 3793 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 516-211 chr5 97409908 97410304 + 2 NA Intergenic Intergenic -94590 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 242-18 chr1 159997057 159997209 + 2 NA Intergenic L1MEi|LINE|L1 34857 NM_145167 93183 Hs.552810 NM_145167 ENSG00000143315 PIGM GPI-MT-I phosphatidylinositol glycan anchor biosynthesis class M protein-coding 342-536 chr8 129524540 129524825 + 2 NA intron (NR_130917, intron 1 of 3) L1MA2|LINE|L1 -40540 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 255-378 chr7 32171950 32172112 + 2 NA intron (NM_001322059, intron 2 of 17) L1MC3|LINE|L1 -100595 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 368-131 chr13 92385631 92385824 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -33520 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 424-160 chr20 43960203 43960573 + 2 NA intron (NM_032883, intron 2 of 9) LTR16|LTR|ERVL 14492 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 366-104 chr12 61306431 61306645 + 2 NA Intergenic L1M1|LINE|L1 886301 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 350-570 chrX 65646800 65647002 + 2 NA Intergenic AluSp|SINE|Alu -20753 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 210-35 chr10 81910177 81910344 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 32573 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 356-453 chr7 61935122 61935342 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1368824 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 222-211 chr20 57150222 57150408 + 2 NA Intergenic HAL1|LINE|L1 -63381 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 420-300 chr8 139853424 139853657 + 2 NA intron (NM_001160372, intron 21 of 22) L2c|LINE|L2 -150417 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 245-297 chr6 40152736 40152921 + 2 NA Intergenic MER21B|LTR|ERVL 203178 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 290-85 chr11 77857215 77857435 + 2 NA intron (NM_001316962, intron 3 of 4) intron (NM_001316962, intron 3 of 4) 16187 NM_001363564 28971 Hs.745040 NM_024684 ENSG00000087884 AAMDC C11orf67|CK067|PTD015 adipogenesis associated Mth938 domain containing protein-coding 263-124 chr15 88780179 88780380 + 2 NA Intergenic L1MB2|LINE|L1 -23157 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 280-246 chr3 2262834 2263083 + 2 NA intron (NM_001206955, intron 1 of 23) MLT1J|LTR|ERVL-MaLR 24129 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 318-279 chr2 102938504 102938708 + 2 NA Intergenic L1MEf|LINE|L1 -42884 NR_135562 105373518 Hs.738351 NR_135562 ENSG00000277527 LINC01796 - long intergenic non-protein coding RNA 1796 ncRNA 437-162 chr20 52792555 52792851 + 2 NA Intergenic Intergenic 171865 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 306-451 chr6 162880987 162881166 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 153106 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 432-180 chr3 97452061 97452337 + 2 NA intron (NM_001080448, intron 7 of 17) intron (NM_001080448, intron 7 of 17) 12592 NM_173655 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 310-529 chr8 115191728 115191925 + 2 NA Intergenic AluSg|SINE|Alu 476187 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 287-110 chr12 30224646 30224862 + 2 NA Intergenic Intergenic -439995 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 186-97 chr20 11836360 11836538 + 2 NA intron (NR_110635, intron 1 of 1) intron (NR_110635, intron 1 of 1) 34266 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 113-13 chr13 50334857 50334939 + 2 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 162880 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 315-409 chr6 15717395 15717590 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -54434 NM_001271667 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 252-38 chr10 43536323 43536502 + 2 NA Intergenic MLT1A-int|LTR|ERVL-MaLR 32047 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 220-27 chr1 204215488 204215645 + 2 NA Intergenic Intergenic -1578 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 318-147 chr12 109756752 109756948 + 2 NA intron (NM_032829, intron 2 of 2) L1M3|LINE|L1 16637 NR_026661 84983 Hs.675961 NM_032897 ENSG00000255650 FAM222A-AS1 - FAM222A antisense RNA 1 ncRNA 225-273 chr5 37141478 37141626 + 2 NA intron (NM_023073, intron 43 of 51) intron (NM_023073, intron 43 of 51) -107494 NR_134263 105374727 Hs.170993 NR_134263 ENSG00000286193 LOC105374727 - uncharacterized LOC105374727 ncRNA 165-78 chr3 76856251 76856356 + 2 NA Intergenic L1MA9|LINE|L1 -183796 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 246-388 chr8 29939931 29940079 + 2 NA intron (NR_024473, intron 2 of 2) intron (NR_024473, intron 2 of 2) 17343 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 278-399 chr7 63142045 63142215 + 2 NA Intergenic L1MC|LINE|L1 161926 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 468-52 chr11 131335353 131335744 + 2 NA Intergenic MIRc|SINE|MIR -35067 NM_001352005 50863 Hs.504352 NM_016522 ENSG00000182667 NTM CEPU-1|HNT|IGLON2|NTRI neurotrimin protein-coding 364-58 chr10 47106043 47106341 + 2 NA Intergenic L1MB3|LINE|L1 -194005 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 572-8 chr1 153382364 153382895 + 2 NA Intergenic L1PA17|LINE|L1 -7008 NM_005621 6283 Hs.19413 NM_005621 ENSG00000163221 S100A12 CAAF1|CAGC|CGRP|ENRAGE|MRP-6|MRP6|p6 S100 calcium binding protein A12 protein-coding 480-93 chr15 53270470 53270828 + 2 NA Intergenic L1MCc|LINE|L1 154284 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 265-225 chr21 30703049 30703278 + 2 NA Intergenic L1M5|LINE|L1 15614 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 378-78 chr11 48244763 48244973 + 2 NA promoter-TSS (NM_001004727) promoter-TSS (NM_001004727) -236 NM_001004727 119764 Hs.553565 NM_001004727 ENSG00000172208 OR4X2 OR11-105 olfactory receptor family 4 subfamily X member 2 (gene/pseudogene) protein-coding 464-197 chr5 28020406 28020661 + 2 NA Intergenic L2a|LINE|L2 267132 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 298-292 chr3 54455291 54455452 + 2 NA intron (NM_018398, intron 4 of 37) L1MA5|LINE|L1 184486 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 710-92 chr8 81592007 81592714 + 2 NA Intergenic MER75|DNA|PiggyBac 38917 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 243-385 chr6 50531184 50531340 + 2 NA Intergenic Intergenic -182282 NM_172238 83741 Hs.434107 NM_172238 ENSG00000008197 TFAP2D TFAP2BL1 transcription factor AP-2 delta protein-coding 177-163 chr8 124210783 124210922 + 2 NA intron (NR_125420, intron 1 of 2) intron (NR_125420, intron 1 of 2) 36546 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 380-298 chr5 22976698 22976941 + 2 NA Intergenic Intergenic -123475 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 424-244 chr6 133374631 133374878 + 2 NA intron (NM_172103, intron 2 of 18) intron (NM_172103, intron 2 of 18) 133255 NM_001301013 2070 Hs.596680 NM_004100 ENSG00000112319 EYA4 CMD1J|DFNA10 EYA transcriptional coactivator and phosphatase 4 protein-coding 150-52 chr2 105107442 105107540 + 2 NA Intergenic Intergenic -4547 NR_110227 101927492 Hs.469537 NR_110227 ENSG00000231851 UTAT33 - uncharacterized LOC101927492 ncRNA 375-267 chr3 99400489 99400788 + 2 NA Intergenic Intergenic -237956 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 240-132 chr14 30139876 30140027 + 2 NA Intergenic Intergenic -212104 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 576-142 chr5 135631489 135631908 + 2 NA intron (NM_001349335, intron 2 of 10) intron (NM_001349335, intron 2 of 10) 22237 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 570-92 chr17 42261567 42262099 + 2 NA intron (NM_012448, intron 1 of 18) AluJb|SINE|Alu 14573 NM_012448 6777 Hs.595276 NM_012448 ENSG00000173757 STAT5B STAT5 signal transducer and activator of transcription 5B protein-coding 490-30 chr1 223257137 223257618 + 2 NA intron (NM_001037175, intron 5 of 5) intron (NM_001037175, intron 5 of 5) 106799 NM_001037175 55061 Hs.497841 NM_017982 ENSG00000143502 SUSD4 PRO222 sushi domain containing 4 protein-coding 1039-5 chr12 16235322 16235990 + 2 NA intron (NM_001170798, intron 5 of 8) intron (NM_001170798, intron 5 of 8) 42029 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 414-284 chr6 51560896 51561292 + 2 NA Intergenic Intergenic -60776 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 341-471 chr6 139528618 139528814 + 2 NA Intergenic CR1_Mam|LINE|CR1 -54120 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 323-214 chr19 29121474 29121669 + 2 NA Intergenic Intergenic 91580 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 357-194 chr2 49074578 49074930 + 2 NA intron (NM_000145, intron 1 of 9) L1MA5A|LINE|L1 15151 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 479-214 chr6 70891589 70891973 + 2 NA intron (NM_080742, intron 2 of 3) (TG)n|Simple_repeat|Simple_repeat 65279 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 359-59 chr10 58974186 58974513 + 2 NA Intergenic MER4D|LTR|ERV1 -25169 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 171-32 chr14 42415234 42415324 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 808423 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 217-104 chr13 70707829 70707982 + 2 NA Intergenic L1MD|LINE|L1 -307236 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 887-27 chr6 110465587 110466471 + 2 NA intron (NM_033125, intron 1 of 7) L1PA17|LINE|L1 10584 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 345-412 chr5 37895167 37895464 + 2 NA Intergenic Intergenic -53176 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 565-136 chr5 5958608 5959010 + 2 NA Intergenic Intergenic 378483 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 494-170 chr3 40872226 40872523 + 2 NA Intergenic Intergenic -327131 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 370-117 chr12 71248030 71248234 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -90133 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 155-50 chr2 3862193 3862322 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 111775 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 352-540 chr8 118212220 118212424 + 2 NA intron (NM_001101676, intron 4 of 4) Kanga1c|DNA|TcMar-Tc2 -100503 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 319-325 chr3 27716027 27716282 + 2 NA 3' UTR (NM_001278182, exon 6 of 6) 3' UTR (NM_001278182, exon 6 of 6) 6169 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 371-97 chr13 92457845 92458066 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -32208 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 479-154 chr4 30504719 30505170 + 2 NA Intergenic L1P4|LINE|L1 -215425 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 119-29 chr2 49094355 49094420 + 2 NA intron (NM_000145, intron 1 of 9) L1ME1|LINE|L1 34784 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 395-107 chr15 56116580 56116929 + 2 NA intron (NM_001370561, intron 7 of 11) L1ME3A|LINE|L1 73178 NM_001370554 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 371-22 chr1 190209200 190209444 + 2 NA intron (NM_199051, intron 6 of 7) MLT1I|LTR|ERVL-MaLR 266688 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 304-396 chr4 160943400 160943698 + 2 NA Intergenic L1MC5|LINE|L1 -1079184 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 338-389 chr4 111194717 111194998 + 2 NA Intergenic L1PB4|LINE|L1 -334210 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 228-24 chr1 187937959 187938149 + 2 NA Intergenic L1ME1|LINE|L1 494426 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 362-38 chr1 240165536 240165794 + 2 NA intron (NM_020066, intron 2 of 17) L1MEg|LINE|L1 73782 NM_020066 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 340-547 chr8 116052200 116052412 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 272753 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 278-425 chr8 120155885 120156055 + 2 NA intron (NM_021110, intron 2 of 47) intron (NM_021110, intron 2 of 47) 30868 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 201-227 chr7 29495543 29495698 + 2 NA intron (NM_001293081, intron 1 of 6) intron (NM_001293081, intron 1 of 6) 11804 NM_001293081 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 477-160 chr2 120426702 120427022 + 2 NA Intergenic HAL1|LINE|L1 39487 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 592-119 chr3 135915614 135916142 + 2 NA Intergenic Intergenic -49850 NM_001190447 5523 Hs.518155 NM_002718 ENSG00000073711 PPP2R3A PPP2R3|PR130|PR72 protein phosphatase 2 regulatory subunit B''alpha protein-coding 263-55 chr10 80318357 80318604 + 2 NA Intergenic AluSq2|SINE|Alu -26265 NR_070308 84332 Hs.741500 NM_032372 ENSG00000133665 DYDC2 - DPY30 domain containing 2 protein-coding 370-151 chr14 87470950 87471182 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 184228 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 214-94 chr13 105405471 105405620 + 2 NA Intergenic HAL1ME|LINE|L1 -60322 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 343-78 chr11 70446895 70447131 + 2 NA Intergenic AluSq2|SINE|Alu 48484 NM_005231 2017 Hs.596164 NM_005231 ENSG00000085733 CTTN EMS1 cortactin protein-coding 337-492 chr6 69428634 69428830 + 2 NA Intergenic Intergenic 367734 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 329-442 chr5 10098332 10098654 + 2 NA Intergenic Intergenic 151395 NM_199133 134145 Hs.481569 NM_199133 ENSG00000150756 ATPSCKMT FAM173B|JS-2|hFAM173B ATP synthase c subunit lysine N-methyltransferase protein-coding 395-82 chr13 65154937 65155293 + 2 NA Intergenic Intergenic -710932 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 198-172 chr3 125636918 125637053 + 2 NA Intergenic AluJo|SINE|Alu -41488 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 204-308 chr9 86806359 86806484 + 2 NA Intergenic Intergenic 141085 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 227-83 chr12 73454729 73454874 + 2 NA Intergenic MIRc|SINE|MIR 295611 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 313-249 chr2 51713757 51713944 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -656798 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 515-167 chr3 138260572 138260998 + 2 NA TTS (NM_001349021) TTS (NM_001349021) 69066 NM_001349023 347736 Hs.660992 NM_178130 ENSG00000181322 NME9 NM23-H9|TXL-2|TXL2|TXNDC6 NME/NM23 family member 9 protein-coding 365-345 chr6 47111559 47111745 + 2 NA Intergenic Intergenic -69320 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 356-419 chr6 38473778 38474011 + 2 NA intron (NM_001172418, intron 5 of 10) L2a|LINE|L2 -7702 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 226-29 chr1 244211712 244211887 + 2 NA Intergenic Intergenic -140836 NM_001012970 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 358-452 chr7 111390055 111390392 + 2 NA intron (NM_032549, intron 3 of 5) LTR16A|LTR|ERVL 172068 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 578-116 chr3 105017780 105018333 + 2 NA Intergenic MIRb|SINE|MIR -348657 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 191-220 chr8 141100435 141100609 + 2 NA Intergenic Intergenic -28067 NR_148197 22898 Hs.18166 NM_014957 ENSG00000105339 DENND3 - DENN domain containing 3 protein-coding 638-153 chr8 45997440 45997945 + 2 NA Intergenic ALR/Alpha|Satellite|centr 619951 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 375-177 chr18 8513437 8513646 + 2 NA Intergenic Intergenic -95904 NM_001025300 201475 Hs.270074 NM_001025300 ENSG00000206418 RAB12 - RAB12, member RAS oncogene family protein-coding 270-253 chr3 182792556 182792737 + 2 NA promoter-TSS (NM_014616) promoter-TSS (NM_014616) -858 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 505-282 chr7 19275682 19276068 + 2 NA Intergenic L1MB1|LINE|L1 -130454 NM_152898 222894 Hs.592168 NM_152898 ENSG00000146618 FERD3L N-TWIST|NATO3|NTWIST|PTFB|bHLHa31 Fer3 like bHLH transcription factor protein-coding 297-115 chr12 125162571 125162723 + 2 NA Intergenic MIR|SINE|MIR -23739 NM_001366854 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 337-154 chr14 70928177 70928458 + 2 NA intron (NM_014982, intron 1 of 35) intron (NM_014982, intron 1 of 35) 20858 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 282-257 chr20 2090105 2090326 + 2 NA Intergenic Intergenic -11612 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 538-250 chr9 13562593 13562951 + 2 NA Intergenic Intergenic -131443 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 475-93 chr16 25780980 25781364 + 2 NA intron (NM_006040, intron 1 of 1) LTR78|LTR|ERV1 89213 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 280-232 chr20 45145751 45145940 + 2 NA Intergenic Intergenic -21380 NM_080869 128488 Hs.352180 NM_080869 ENSG00000168703 WFDC12 C20orf122|SWAM2|WAP2|dJ211D12.4 WAP four-disulfide core domain 12 protein-coding 346-2 chr1 23887251 23887464 + 2 NA intron (NM_001841, intron 1 of 1) intron (NM_001841, intron 1 of 1) -18988 NM_000147 2517 Hs.370858 NM_000147 ENSG00000179163 FUCA1 FUCA alpha-L-fucosidase 1 protein-coding 253-426 chr9 31814827 31815066 + 2 NA Intergenic Intergenic -433456 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 142-64 chr6 35664841 35664941 + 2 NA promoter-TSS (NR_049873) promoter-TSS (NR_049873) -102 NR_049873 100847048 NR_049873 ENSG00000265527 MIR5690 - microRNA 5690 ncRNA 242-305 chr5 68999325 68999547 + 2 NA intron (NR_130778, intron 1 of 3) intron (NR_130778, intron 1 of 3) 30491 NR_130778 101928885 Hs.630474 NR_130778 LINC02198 - long intergenic non-protein coding RNA 2198 ncRNA 182-119 chr4 30529240 30529363 + 2 NA Intergenic Intergenic -191068 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 228-313 chr7 24356297 24356476 + 2 NA Intergenic Intergenic 72196 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 330-163 chr14 82126026 82126214 + 2 NA Intergenic Intergenic -382982 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 404-87 chr13 52861345 52861591 + 2 NA Intergenic AluSz|SINE|Alu -12828 NM_002590 5100 Hs.19492 NM_002590 ENSG00000136099 PCDH8 ARCADLIN|PAPC protocadherin 8 protein-coding 364-385 chr6 88477853 88478084 + 2 NA Intergenic Intergenic 61401 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 273-122 chr13 108054223 108054399 + 2 NA Intergenic L2|LINE|L2 160471 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 293-311 chr4 95657215 95657483 + 2 NA Intergenic L1PA16|LINE|L1 -108376 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 349-71 chr10 78808267 78808496 + 2 NA Intergenic Intergenic 259067 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 304-458 chr6 45764987 45765250 + 2 NA Intergenic L1MEc|LINE|L1 172479 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 222-79 chr12 30679790 30679973 + 2 NA intron (NM_006390, intron 5 of 24) intron (NM_006390, intron 5 of 24) -2637 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 406-205 chr4 44858816 44859098 + 2 NA Intergenic Intergenic -132323 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 410-178 chr22 43484324 43484564 + 2 NA intron (NM_001362786, intron 4 of 6) intron (NM_001362786, intron 4 of 6) -31810 NR_046563 100874197 Hs.627997 NR_046563 EFCAB6-AS1 - EFCAB6 antisense RNA 1 ncRNA 268-200 chr2 99000024 99000206 + 2 NA intron (NR_146001, intron 18 of 18) AluSx|SINE|Alu -63890 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 225-149 chr2 48625147 48625356 + 2 NA intron (NM_001198594, intron 4 of 7) L1MA9|LINE|L1 7395 NM_006872 11036 Hs.732016 NM_006872 ENSG00000242441 GTF2A1L ALF general transcription factor IIA subunit 1 like protein-coding 265-112 chr14 81723648 81723849 + 2 NA Intergenic Intergenic 19390 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 193-174 chr6 63769845 63769976 + 2 NA intron (NM_001292009, intron 40 of 43) intron (NM_001292009, intron 40 of 43) -36926 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 577-185 chr7 62918785 62919192 + 2 NA Intergenic ALR/Alpha|Satellite|centr 385068 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 304-315 chr22 27697066 27697334 + 2 NA Intergenic Intergenic 104556 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 341-511 chr8 25100697 25100986 + 2 NA Intergenic MER21C|LTR|ERVL -83848 NM_024940 80005 Hs.195403 NM_024940 ENSG00000147459 DOCK5 - dedicator of cytokinesis 5 protein-coding 233-291 chr5 31651129 31651331 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 12099 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 332-16 chr1 102231613 102231806 + 2 NA Intergenic Intergenic -234475 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 298-109 chr13 81786113 81786274 + 2 NA Intergenic L1PA8|LINE|L1 -559210 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 346-432 chr6 97218246 97218487 + 2 NA intron (NM_001350600, intron 13 of 23) intron (NM_001350600, intron 13 of 23) 64850 NM_198468 253714 Hs.444292 NM_198468 ENSG00000146263 MMS22L C6orf167|dJ39B17.2 MMS22 like, DNA repair protein protein-coding 255-390 chr7 78630348 78630555 + 2 NA intron (NM_001301128, intron 2 of 20) AluSg|SINE|Alu 283209 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 114-9 chr12 44182944 44183010 + 2 NA intron (NM_001286213, intron 3 of 6) intron (NM_001286213, intron 3 of 6) 346896 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 251-29 chr10 22797524 22797717 + 2 NA Intergenic AluSx3|SINE|Alu -83042 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 212-251 chr5 23061356 23061562 + 2 NA Intergenic Intergenic -208115 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 221-15 chr1 118449924 118450117 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -264792 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 207-239 chr5 37045425 37045607 + 2 NA exon (NM_133433, exon 37 of 47) exon (NM_133433, exon 37 of 47) 168747 NM_015384 25836 Hs.481927 NM_015384 ENSG00000164190 NIPBL CDLS|CDLS1|IDN3|IDN3-B|Scc2 NIPBL cohesin loading factor protein-coding 262-66 chr10 133448419 133448578 + 2 NA Intergenic L1MA5|LINE|L1 -5430 NR_149718 619207 Hs.659384 NM_001033584 ENSG00000214279 SCART1 - scavenger receptor family member expressed on T cells 1 pseudo 687-7 chr1 191361228 191361725 + 2 NA Intergenic Intergenic -132978 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 304-6 chr1 47044582 47044738 + 2 NA intron (NM_178033, intron 8 of 11) L1MA8|LINE|L1 20991 NM_178033 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 274-257 chr3 44553870 44554017 + 2 NA Intergenic Intergenic -1250 NM_001288592 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 331-499 chr7 62679796 62680110 + 2 NA Intergenic ALR/Alpha|Satellite|centr 624103 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 428-327 chrX 34470684 34471060 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 186413 NM_031442 83604 Hs.8769 NM_031442 ENSG00000147027 TMEM47 BCMP1|TM4SF10|VAB-9 transmembrane protein 47 protein-coding 409-293 chr8 71285202 71285565 + 2 NA intron (NM_001370336, intron 10 of 17) intron (NM_001370336, intron 10 of 17) 71323 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 341-381 chr4 66720551 66720780 + 2 NA Intergenic Intergenic 443841 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 388-139 chr18 51596866 51597162 + 2 NA Intergenic Intergenic 204972 NR_040074 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 418-298 chr8 137850883 137851217 + 2 NA intron (NR_161374, intron 2 of 7) MIRc|SINE|MIR 232495 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 418-224 chr5 124046613 124046952 + 2 NA Intergenic Intergenic 391738 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 416-153 chr19 21269395 21269633 + 2 NA Intergenic Intergenic 59896 NM_021269 7562 Hs.466296 NM_021269 ENSG00000182141 ZNF708 KOX8|ZNF15|ZNF15L1 zinc finger protein 708 protein-coding 587-53 chr16 6587491 6587907 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -186110 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 209-334 chr8 122501161 122501343 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 67392 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 283-20 chr1 157480242 157480449 + 2 NA Intergenic L1M4|LINE|L1 72170 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 316-14 chr1 80878184 80878415 + 2 NA Intergenic L3|LINE|CR1 237012 NR_125942 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 332-515 chr8 46322412 46322695 + 2 NA Intergenic ALR/Alpha|Satellite|centr 295090 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 131-49 chr3 19127741 19127812 + 2 NA Intergenic Kanga1d|DNA|TcMar-Tc2 -20734 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 326-64 chr10 49812265 49812575 + 2 NA Intergenic L1MC1|LINE|L1 -50041 NM_001347820 55753 Hs.17860 NM_018245 ENSG00000197444 OGDHL - oxoglutarate dehydrogenase like protein-coding 285-269 chr3 83102239 83102499 + 2 NA Intergenic Intergenic 1116227 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 290-142 chr15 25144135 25144325 + 2 NA intron (NR_146177, intron 61 of 147) intron (NR_146177, intron 61 of 147) 8588 NR_022009 145624 Hs.612027 NR_022009 ENSG00000279050 PWAR1 D15S227E|PAR-1|PAR1 Prader Willi/Angelman region RNA 1 ncRNA 319-18 chr1 108676905 108677095 + 2 NA Intergenic AluSz6|SINE|Alu -15310 NM_018061 55119 Hs.342307 NM_018061 ENSG00000134186 PRPF38B NET1 pre-mRNA processing factor 38B protein-coding 180-44 chr14 37990236 37990373 + 2 NA Intergenic L1M4|LINE|L1 -88180 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 383-259 chr3 139185960 139186248 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat 47418 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 274-206 chr2 68597068 68597234 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -46437 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 356-271 chr2 188889784 188890078 + 2 NA Intergenic L1MEd|LINE|L1 -84442 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 373-375 chr7 37275202 37275400 + 2 NA intron (NM_001206480, intron 4 of 21) intron (NM_001206480, intron 4 of 21) 78367 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 299-249 chr20 8086598 8086822 + 2 NA Intergenic L1ME1|LINE|L1 -45556 NM_182734 23236 Hs.431173 NM_015192 ENSG00000182621 PLCB1 EIEE12|PI-PLC|PLC-154|PLC-I|PLC-beta-1|PLC154|PLCB1A|PLCB1B phospholipase C beta 1 protein-coding 340-189 chr16 56018795 56019053 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -62893 NM_001190158 221223 Hs.350800 NM_145024 ENSG00000159398 CES5A CAUXIN|CES4C1|CES5|CES7|HEL126 carboxylesterase 5A protein-coding 235-278 chr5 27975954 27976107 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 311635 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 234-311 chr5 66628080 66628261 + 2 NA intron (NM_001290228, intron 1 of 4) AluJo|SINE|Alu 31777 NM_198828 375449 Hs.595458 NM_015183 ENSG00000069020 MAST4 - microtubule associated serine/threonine kinase family member 4 protein-coding 302-157 chr16 52779698 52779903 + 2 NA Intergenic Intergenic -172825 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 200-198 chr5 3976552 3976740 + 2 NA Intergenic L1MEf|LINE|L1 380814 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 312-224 chr2 31695234 31695524 + 2 NA Intergenic LTR9A1|LTR|ERV1 108601 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 315-243 chr2 83670054 83670240 + 2 NA Intergenic Intergenic 147333 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 341-386 chr4 97952580 97952887 + 2 NA intron (NM_174952, intron 7 of 10) L1PB3|LINE|L1 190743 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 572-9 chr1 169716986 169717479 + 2 NA Intergenic L1MB5|LINE|L1 -5612 NM_000655 6402 Hs.728756 NM_000655 ENSG00000188404 SELL CD62L|LAM1|LECAM1|LEU8|LNHR|LSEL|LYAM1|PLNHR|TQ1 selectin L protein-coding 247-389 chr7 108832905 108833080 + 2 NA Intergenic L1MA4|LINE|L1 51595 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 385-121 chr16 51695325 51695564 + 2 NA Intergenic L1MC3|LINE|L1 -67075 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 335-373 chr3 194796968 194797229 + 2 NA Intergenic L1MA4A|LINE|L1 -28389 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 168-81 chr4 85562818 85562950 + 2 NA intron (NM_001025616, intron 1 of 9) intron (NM_001025616, intron 1 of 9) 87734 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 260-136 chr14 85173661 85173840 + 2 NA Intergenic Intergenic -98182 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 130-30 chr17 59037735 59037819 + 2 NA intron (NR_148346, intron 17 of 23) L1MC3|LINE|L1 69103 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 335-499 chr7 41997132 41997334 + 2 NA intron (NM_000168, intron 10 of 14) intron (NM_000168, intron 10 of 14) 239976 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 253-68 chr11 29820769 29820948 + 2 NA Intergenic Intergenic 161535 NR_132652 106456574 Hs.128812 NR_132652 ENSG00000261340 LINC01616 n341006 long intergenic non-protein coding RNA 1616 ncRNA 353-497 chr7 97482132 97482415 + 2 NA Intergenic L2c|LINE|L2 -249813 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 276-93 chr11 113378553 113378795 + 2 NA Intergenic Intergenic -9105 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 333-112 chr12 30196866 30197106 + 2 NA Intergenic L1M5|LINE|L1 -412227 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 462-104 chr16 71486035 71486468 + 2 NA intron (NM_006961, intron 1 of 5) AluJb|SINE|Alu 3073 NM_006961 7567 Hs.660076 NM_006961 ENSG00000157429 ZNF19 KOX12 zinc finger protein 19 protein-coding 263-212 chr2 123485800 123486043 + 2 NA Intergenic Intergenic -412440 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 321-419 chr4 64044790 64045098 + 2 NA Intergenic Intergenic 364506 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 328-254 chr2 50861716 50862015 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) -165603 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 186-171 chr9 37967603 37967731 + 2 NA intron (NM_003028, intron 3 of 5) MER5A|DNA|hAT-Charlie -63314 NR_024873 92014 Hs.634120 NM_033412 ENSG00000122696 SLC25A51 CG7943|MCART1 solute carrier family 25 member 51 protein-coding 723-10 chr1 227444591 227445064 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -118729 NM_178549 339500 Hs.30323 NM_032755 ENSG00000181450 ZNF678 - zinc finger protein 678 protein-coding 168-29 chr14 56468937 56469071 + 2 NA Intergenic L1M2|LINE|L1 -45327 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 341-178 chr15 98206324 98206540 + 2 NA Intergenic L1MA8|LINE|L1 -117679 NR_120325 101927332 NR_120325 LINC01582 - long intergenic non-protein coding RNA 1582 ncRNA 461-54 chr11 109539053 109539400 + 2 NA Intergenic L1M1|LINE|L1 117036 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 503-268 chr7 84604547 84604973 + 2 NA Intergenic L1M2a1|LINE|L1 72284 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 322-14 chr1 79817844 79818029 + 2 NA Intergenic Intergenic -717819 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 518-265 chr7 4297942 4298296 + 2 NA Intergenic Intergenic -163282 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 259-236 chr21 15526002 15526183 + 2 NA Intergenic Intergenic -203842 NM_001283041 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 621-97 chr5 92306230 92306624 + 2 NA Intergenic Intergenic -923110 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 443-160 chr2 191655988 191656306 + 2 NA Intergenic MIRc|SINE|MIR -21925 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 285-4 chr1 49736378 49736587 + 2 NA intron (NM_001323575, intron 2 of 12) L1M2|LINE|L1 -264397 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 230-185 chr2 160574989 160575141 + 2 NA Intergenic L2b|LINE|L2 -81258 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 276-283 chr3 8173191 8173369 + 2 NA Intergenic Intergenic -156973 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 204-67 chr12 126919503 126919665 + 2 NA intron (NR_104646, intron 6 of 6) L1MB8|LINE|L1 -44894 NR_033970 440117 Hs.127100 NR_033970 ENSG00000249873 LINC02372 - long intergenic non-protein coding RNA 2372 ncRNA 268-258 chr3 175634089 175634226 + 2 NA intron (NM_207015, intron 11 of 13) intron (NM_207015, intron 11 of 13) 142176 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 302-413 chr7 53709096 53709332 + 2 NA intron (NR_038371, intron 4 of 5) MIR|SINE|MIR 102717 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 566-194 chr8 93084184 93084515 + 2 NA Intergenic Intergenic 54598 NR_107051 102467005 NR_107051 ENSG00000277063 MIR8084 hsa-mir-8084 microRNA 8084 ncRNA 314-501 chr6 48179437 48179636 + 2 NA Intergenic L1MC1|LINE|L1 -110847 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 462-33 chr10 87641966 87642341 + 2 NA Intergenic MIR|SINE|MIR -17725 NM_001015880 9060 Hs.524491 NM_004670 ENSG00000198682 PAPSS2 ATPSK2|BCYM4|SK2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 protein-coding 305-17 chr1 88123077 88123232 + 2 NA Intergenic Intergenic -560990 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 232-168 chr2 57226737 57226914 + 2 NA Intergenic Intergenic -680826 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 330-59 chr10 51639038 51639326 + 2 NA intron (NM_001098512, intron 3 of 17) AluYf1|SINE|Alu 60413 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 156-114 chrX 97156469 97156571 + 2 NA intron (NM_007309, intron 22 of 26) intron (NM_007309, intron 22 of 26) 272612 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 317-29 chr1 188750199 188750493 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1306718 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 313-149 chr14 62439251 62439492 + 2 NA Intergenic L1M2a|LINE|L1 -299398 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 412-179 chr20 4429290 4429646 + 2 NA Intergenic L1PA17|LINE|L1 -180181 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 420-10 chr1 76819970 76820268 + 2 NA Intergenic MIRb|SINE|MIR -40852 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 444-97 chr17 65352778 65353124 + 2 NA Intergenic L1ME3B|LINE|L1 -104590 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 355-136 chr12 129193824 129194101 + 2 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) -14639 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 365-347 chr6 52031390 52031663 + 2 NA intron (NM_138694, intron 29 of 66) MER57C2|LTR|ERV1 56087 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 495-194 chr5 30347644 30348131 + 2 NA Intergenic L1MCc|LINE|L1 467327 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 339-226 chr18 7646214 7646481 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 79031 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 292-224 chr2 117391543 117391718 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -423061 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 712 chr1 30012381 30012995 + 2 NA Intergenic MIRb|SINE|MIR 24924 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 249-367 chr6 159374213 159374380 + 2 NA Intergenic Intergenic -9235 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 388-219 chr3 18454086 18454380 + 2 NA intron (NR_125803, intron 1 of 6) Charlie17a|DNA|hAT-Charlie -8641 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 294-97 chr13 40099725 40099912 + 2 NA Intergenic MER21C|LTR|ERVL -81991 NR_046870 100874127 Hs.578028 NR_046870 ENSG00000230710 LINC00332 NCRNA00332 long intergenic non-protein coding RNA 332 ncRNA 350-369 chr4 156402650 156402994 + 2 NA Intergenic L1M4|LINE|L1 -448956 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 588-79 chr2 208567107 208567526 + 2 NA intron (NR_136588, intron 1 of 5) LTR49|LTR|ERV1 24674 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 365-371 chr7 39005804 39006132 + 2 NA intron (NR_138047, intron 1 of 6) intron (NR_138047, intron 1 of 6) 7599 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 903-20 chr2 53541369 53541927 + 2 NA Intergenic Intergenic -226135 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 265-118 chr15 53456389 53456557 + 2 NA Intergenic Intergenic 84379 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 568-167 chr5 167753665 167754062 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) -1066 NM_001080428 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 242-354 chr6 154969834 154970054 + 2 NA Intergenic Intergenic 116584 NR_036100 100422821 NR_036100 ENSG00000264814 MIR1273C - microRNA 1273c ncRNA 288-196 chr2 79445245 79445515 + 2 NA Intergenic MIRb|SINE|MIR 55464 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 206-105 chr2 10623231 10623379 + 2 NA intron (NR_048552, intron 12 of 19) intron (NR_048552, intron 12 of 19) 66670 NM_024894 79954 Hs.222494 NM_024894 ENSG00000115761 NOL10 PQBP5 nucleolar protein 10 protein-coding 507-191 chr4 189256581 189256928 + 2 NA Intergenic L2|LINE|L2 -402852 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 328-558 chr8 50431836 50432050 + 2 NA intron (NR_135795, intron 4 of 18) L1MC3|LINE|L1 267812 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 380-338 chr6 52084449 52084734 + 2 NA intron (NM_138694, intron 2 of 66) intron (NM_138694, intron 2 of 66) 3022 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 403-15 chr1 180657416 180657628 + 2 NA intron (NR_137330, intron 1 of 12) L1MA3|LINE|L1 25500 NR_137330 9213 Hs.227656 NM_004736 ENSG00000143324 XPR1 IBGC6|SLC53A1|SYG1|X3 xenotropic and polytropic retrovirus receptor 1 protein-coding 266-338 chr5 91002710 91002898 + 2 NA intron (NR_003149, intron 85 of 89) L1ME4a|LINE|L1 311598 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 281-303 chr3 192351825 192352035 + 2 NA intron (NM_004113, intron 3 of 5) L2a|LINE|L2 57119 NM_021032 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 272-90 chr12 33006650 33006822 + 2 NA Intergenic Intergenic -109890 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 270-170 chr19 52125935 52126125 + 2 NA intron (NM_178523, intron 2 of 3) L1M4c|LINE|L1 13908 NM_178523 90317 Hs.645225 NM_178523 ENSG00000204611 ZNF616 - zinc finger protein 616 protein-coding 264-46 chr10 58018668 58018864 + 2 NA Intergenic Intergenic 249128 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 708-55 chr4 101768621 101769113 + 2 NA Intergenic L1PA16|LINE|L1 -21740 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 703-92 chr8 83409798 83410283 + 2 NA Intergenic Intergenic 6282 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 355-187 chr16 76267716 76267999 + 2 NA Intergenic L1MA8|LINE|L1 -9544 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 572-91 chr2 100684143 100684533 + 2 NA Intergenic L1MEg|LINE|L1 80599 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 327-148 chr14 53465467 53465690 + 2 NA Intergenic L1M1|LINE|L1 312224 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 357-83 chr12 29262731 29262967 + 2 NA intron (NM_001271784, intron 1 of 10) L1MA3|LINE|L1 39183 NM_018099 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 552-139 chr3 84478321 84478737 + 2 NA Intergenic AluSx1|SINE|Alu 391046 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 366-181 chr19 41798432 41798742 + 2 NA intron (NM_001815, intron 2 of 6) intron (NM_001815, intron 2 of 6) 2000 NM_001815 1084 Hs.11 NM_001815 ENSG00000170956 CEACAM3 CD66D|CEA|CGM1|W264|W282 carcinoembryonic antigen related cell adhesion molecule 3 protein-coding 301-83 chr12 14280709 14280982 + 2 NA Intergenic Intergenic -84787 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 490-239 chr6 40698418 40698815 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -111252 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 414-361 chrX 20636896 20637181 + 2 NA Intergenic Intergenic -370129 NM_004586 6197 Hs.445387 NM_004586 ENSG00000177189 RPS6KA3 CLS|HU-3|ISPK-1|MAPKAPK1B|MRX19|RSK|RSK2|S6K-alpha3|p90-RSK2|pp90RSK2 ribosomal protein S6 kinase A3 protein-coding 334-525 chr8 54246778 54247049 + 2 NA Intergenic L1MB3|LINE|L1 -83773 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 319-377 chr4 70174151 70174406 + 2 NA Intergenic L2|LINE|L2 20041 NM_214711 401137 Hs.518795 NM_214711 ENSG00000187533 PRR27 C4orf40 proline rich 27 protein-coding 417-310 chrUn_KI270756v1 49157 49545 + 2 NA NA Intergenic NA NA 340-200 chr17 31570140 31570370 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -5014 NR_039878 100616449 NR_039878 ENSG00000265976 MIR4725 mir-4725 microRNA 4725 ncRNA 323-268 chr2 119839532 119839820 + 2 NA intron (NM_002830, intron 2 of 26) intron (NM_002830, intron 2 of 26) 79754 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 339-370 chr3 87960341 87960577 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -22117 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 393-133 chr17 68365465 68365805 + 2 NA intron (NM_001352904, intron 6 of 12) intron (NM_001352904, intron 6 of 12) -47988 NM_001278433 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 375-58 chr10 104786607 104786825 + 2 NA intron (NM_014978, intron 1 of 26) intron (NM_014978, intron 1 of 26) -120500 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 386-263 chr4 67255549 67255817 + 2 NA Intergenic L1PA10|LINE|L1 166317 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 130-65 chr4 141444599 141444688 + 2 NA Intergenic Intergenic -112026 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 673-19 chr10 101641451 101641975 + 2 NA intron (NR_136613, intron 4 of 7) intron (NR_136613, intron 4 of 7) -40216 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 484-280 chr8 144967860 144968182 + 2 NA Intergenic LTR56|LTR|ERV1 -17141 NM_001029976 7564 Hs.493225 NM_006958 ENSG00000170631 ZNF16 HZF1|KOX9 zinc finger protein 16 protein-coding 601-43 chr14 82631787 82632255 + 2 NA Intergenic Intergenic -10611 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 272-387 chr6 62614587 62614732 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -328432 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 412-17 chr10 9851721 9851973 + 2 NA Intergenic L1ME3B|LINE|L1 -206875 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 382-349 chr5 179086372 179086619 + 2 NA Intergenic Cheshire|DNA|hAT-Charlie 26122 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 368-282 chr3 18011717 18012059 + 2 NA intron (NR_161333, intron 1 of 4) intron (NR_161333, intron 1 of 4) 49336 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 427-95 chr17 54020745 54021045 + 2 NA Intergenic L1MA9|LINE|L1 197968 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 353-16 chr1 77149458 77149757 + 2 NA intron (NM_005482, intron 9 of 10) L1MA4|LINE|L1 69823 NM_005482 10026 Hs.178305 NM_005482 ENSG00000142892 PIGK GPI8 phosphatidylinositol glycan anchor biosynthesis class K protein-coding 316-489 chr6 103136086 103136279 + 2 NA Intergenic L1MA10|LINE|L1 1723364 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 258-26 chr1 195572626 195572814 + 2 NA Intergenic L1MA8|LINE|L1 515995 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 321-481 chr5 168597881 168598090 + 2 NA Intergenic AluJb|SINE|Alu -18617 NM_024594 79646 Hs.388400 NM_024594 ENSG00000120137 PANK3 - pantothenate kinase 3 protein-coding 427-145 chr22 10730101 10730471 + 2 NA Intergenic (TCCATTCCAT)n|Simple_repeat|Simple_repeat 231243 NR_132320 102723780 NR_132320 FRG1FP - FSHD region gene 1 family member F, pseudogene pseudo 161-32 chr16 54704901 54705018 + 2 NA Intergenic Intergenic 143274 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 316-120 chr12 16244885 16245163 + 2 NA intron (NM_001170798, intron 3 of 8) intron (NM_001170798, intron 3 of 8) 32661 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 492-229 chr6 71702912 71703248 + 2 NA Intergenic L1MC4a|LINE|L1 -183623 NM_001350413 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 295-128 chr14 52275666 52275955 + 2 NA 3' UTR (NM_000953, exon 2 of 2) 3' UTR (NM_000953, exon 2 of 2) 8112 NM_000953 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 332-175 chr16 6976505 6976774 + 2 NA intron (NM_001142334, intron 1 of 13) MER41C|LTR|ERV1 202830 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 595-91 chr2 146698924 146699402 + 2 NA Intergenic HERVL40-int|LTR|ERVL 112106 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 371-180 chr2 115249888 115250152 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -59217 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 264-152 chr16 19773311 19773540 + 2 NA intron (NM_001305122, intron 7 of 8) intron (NM_001305122, intron 7 of 8) -55198 NM_001348533 400506 Hs.585209 NM_001012991 ENSG00000103550 KNOP1 101F10.1|C16orf88|FAM191A|TSG118 lysine rich nucleolar protein 1 protein-coding 409-183 chr21 30595309 30595639 + 2 NA Intergenic Intergenic 3034 NM_181605 337968 Hs.553691 NM_181605 ENSG00000212938 KRTAP6-3 KAP6.3 keratin associated protein 6-3 protein-coding 712-33 chr17 34738540 34739102 + 2 NA Intergenic Intergenic 158072 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 236-98 chr12 133160258 133160448 + 2 NA TTS (NM_015394) TTS (NM_015394) -21142 NM_001165885 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 313-525 chr8 84428927 84429184 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 13571 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 211-290 chr8 21660575 21660728 + 2 NA Intergenic Intergenic 128224 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 405-182 chr20 46908692 46909067 + 2 NA intron (NM_172110, intron 1 of 13) (T)n|Simple_repeat|Simple_repeat 14036 NM_005244 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 212-32 chr10 31126236 31126398 + 2 NA Intergenic Charlie13a|DNA|hAT-Charlie -61566 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 357-90 chr12 118780853 118781173 + 2 NA Intergenic Intergenic -19334 NR_134999 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 148-21 chr13 59473212 59473299 + 2 NA Intergenic L1MB1|LINE|L1 -539463 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 660-107 chr8 80884986 80885537 + 2 NA Intergenic MER45A|DNA|hAT-Tip100 -10480 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 290-21 chr1 163874743 163874892 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -451626 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 271-461 chr8 128078843 128079008 + 2 NA intron (NR_003367, intron 6 of 8) AluJb|SINE|Alu 29773 NR_031612 100302175 NR_031612 ENSG00000221176 MIR1207 MIRN1207|hsa-mir-1207 microRNA 1207 ncRNA 321-519 chr7 21645804 21646101 + 2 NA intron (NM_001277115, intron 28 of 81) L1M5|LINE|L1 102913 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 383-261 chr3 147438336 147438664 + 2 NA intron (NR_121655, intron 1 of 2) Tigger1|DNA|TcMar-Tigger 17173 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 362-224 chr2 115683125 115683400 + 2 NA intron (NM_001321912, intron 6 of 25) L1MC1|LINE|L1 339447 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 493-259 chr6 86325733 86326045 + 2 NA Intergenic MER57-int|LTR|ERV1 -611639 NM_000865 3354 Hs.1611 NM_000865 ENSG00000168830 HTR1E 5-HT1E 5-hydroxytryptamine receptor 1E protein-coding 243-461 chr8 135657079 135657247 + 2 NA Intergenic Intergenic 199707 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 321-115 chr11 121831835 121832021 + 2 NA Intergenic MIRb|SINE|MIR 267916 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 363-120 chr13 61322627 61322849 + 2 NA Intergenic L1MB3|LINE|L1 92784 NM_022843 64881 Hs.391781 NM_022843 ENSG00000280165 PCDH20 PCDH13 protocadherin 20 protein-coding 163-49 chr15 96411753 96411859 + 2 NA Intergenic Intergenic 78041 NM_001145157 7026 Hs.347991 NM_021005 ENSG00000185551 NR2F2 ARP-1|ARP1|CHTD4|COUPTF2|COUPTFB|COUPTFII|NF-E3|SVP40|TFCOUP2 nuclear receptor subfamily 2 group F member 2 protein-coding 147-21 chr14 51776494 51776582 + 2 NA Intergenic Intergenic 59255 NM_001267047 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 263-354 chr6 46411956 46412163 + 2 NA intron (NM_001251973, intron 2 of 4) L2|LINE|L2 79264 NM_001251974 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 199-38 chr11 82272944 82273119 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 130882 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 336-458 chr5 89345801 89346080 + 2 NA intron (NR_136219, intron 7 of 9) intron (NR_136219, intron 7 of 9) -441835 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 185-210 chr9 26939982 26940104 + 2 NA intron (NM_001321546, intron 1 of 12) L1M4c|LINE|L1 -6947 NM_001099223 80173 Hs.145402 NM_025103 ENSG00000096872 IFT74 BBS20|CCDC2|CMG-1|CMG1 intraflagellar transport 74 protein-coding 335-430 chr5 91802976 91803305 + 2 NA Intergenic LTR28C|LTR|ERV1 -419823 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 253-301 chr4 97377485 97377642 + 2 NA intron (NR_102713, intron 1 of 5) MIRb|SINE|MIR 10637 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 261-232 chr3 16849858 16850007 + 2 NA Intergenic Intergenic -35023 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 498-226 chr5 152498614 152498950 + 2 NA Intergenic MIRb|SINE|MIR -93503 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 397-47 chr11 34719639 34719882 + 2 NA Intergenic L2a|LINE|L2 87194 NM_001206616 26298 Hs.653859 NM_012153 ENSG00000135373 EHF ESE3|ESE3B|ESEJ ETS homologous factor protein-coding 289-498 chrX 47930057 47930260 + 2 NA Intergenic MER77|LTR|ERVL 73831 NM_001007088 7569 Hs.189690 NM_006962 ENSG00000147118 ZNF182 HHZ150|KOX14|ZNF21|Zfp182 zinc finger protein 182 protein-coding 334-115 chr12 103581344 103581593 + 2 NA Intergenic Intergenic -5805 NM_017564 55576 Hs.408249 NM_017564 ENSG00000136011 STAB2 FEEL2|FELE-2|FELL2|FEX2|HARE|SCARH1 stabilin 2 protein-coding 352-529 chr8 83844988 83845166 + 2 NA Intergenic MIRc|SINE|MIR -337710 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 230-164 chr2 17094280 17094441 + 2 NA Intergenic L1ME1|LINE|L1 424080 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 346-261 chr2 154913054 154913306 + 2 NA Intergenic Intergenic 214485 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 554-61 chr12 84387537 84388034 + 2 NA Intergenic L1MC1|LINE|L1 525014 NM_182767 55117 Hs.44424 NM_018057 ENSG00000072041 SLC6A15 NTT73|SBAT1|V7-3|hv7-3 solute carrier family 6 member 15 protein-coding 332-397 chr5 3071229 3071406 + 2 NA Intergenic L1PA13|LINE|L1 -106518 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 242-286 chr5 5449050 5449242 + 2 NA intron (NM_015325, intron 10 of 18) intron (NM_015325, intron 10 of 18) 26469 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 247-329 chr5 86011018 86011217 + 2 NA Intergenic MER53|DNA|hAT -271327 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 263-13 chr1 102022062 102022261 + 2 NA Intergenic L1MEf|LINE|L1 -24927 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 212-69 chr11 85040050 85040253 + 2 NA intron (NM_001351274, intron 5 of 26) intron (NM_001351274, intron 5 of 26) -116730 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 218-82 chr13 55747196 55747386 + 2 NA Intergenic L1M5|LINE|L1 572837 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 247-370 chr6 162238952 162239173 + 2 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -488070 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 337-332 chr3 4336690 4336925 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 33503 NM_001320676 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 305-362 chr3 143406113 143406413 + 2 NA intron (NM_173653, intron 12 of 15) Looper|DNA|PiggyBac 64017 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 223-143 chr2 17267037 17267198 + 2 NA Intergenic L2a|LINE|L2 251323 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 487-264 chr7 24729258 24729743 + 2 NA intron (NM_004403, intron 3 of 9) intron (NM_004403, intron 3 of 9) 27964 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 315-216 chr19 56809124 56809328 + 2 NA TTS (NM_001369722) TTS (NM_001369722) -3254 NR_023847 100169890 NR_023847 PEG3-AS1 APEG3|NCRNA00155|PEG3-AS|PEG3AS PEG3 antisense RNA 1 ncRNA 823-9 chr12 37749874 37750415 + 2 NA Intergenic ALR/Alpha|Satellite|centr -566630 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 290-416 chr7 41494146 41494299 + 2 NA Intergenic L2a|LINE|L2 -199697 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 350-94 chr12 33015938 33016165 + 2 NA Intergenic L2c|LINE|L2 -119205 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 248-25 chr1 234664950 234665164 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 18768 NR_125944 101927787 Hs.520658 NR_125944 ENSG00000228044 LOC101927787 - uncharacterized LOC101927787 ncRNA 250-252 chr21 26715057 26715193 + 2 NA Intergenic MER41A|LTR|ERV1 130284 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 601-111 chr4 89853418 89853995 + 2 NA Intergenic Intergenic -15402 NM_001146055 6622 Hs.21374 NM_000345 ENSG00000145335 SNCA NACP|PARK1|PARK4|PD1 synuclein alpha protein-coding 273-266 chr21 10710870 10711085 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 189463 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 221-71 chr13 62719106 62719325 + 2 NA intron (NR_047029, intron 5 of 7) L1MA8|LINE|L1 77477 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 436-112 chr18 10057729 10058149 + 2 NA Intergenic Intergenic 143923 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 283-397 chr6 92610640 92610909 + 2 NA Intergenic L1MC|LINE|L1 808785 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 202-222 chr6 38464899 38465004 + 2 NA intron (NM_001172418, intron 5 of 10) L1ME1|LINE|L1 -16645 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 460-77 chr14 31651152 31651577 + 2 NA intron (NM_001201573, intron 2 of 8) intron (NM_001201573, intron 2 of 8) -63205 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 210-27 chr10 44118440 44118613 + 2 NA Intergenic Intergenic -174224 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 404-114 chr15 61657114 61657459 + 2 NA Intergenic L2b|LINE|L2 -72632 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 142-23 chr14 51950837 51950973 + 2 NA intron (NM_001243773, intron 3 of 3) intron (NM_001243773, intron 3 of 3) -32334 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 446-240 chr5 63014606 63014947 + 2 NA Intergenic Intergenic 435957 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 329-341 chr22 43714581 43714787 + 2 NA intron (NM_198856, intron 7 of 29) HAL1b|LINE|L1 97621 NM_198856 64800 Hs.658996 NM_022785 ENSG00000186976 EFCAB6 DJBP|HSCBCIP1|dJ185D5.1 EF-hand calcium binding domain 6 protein-coding 363-456 chr8 129747941 129748269 + 2 NA TTS (NM_031415) TTS (NM_031415) 38519 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 247-257 chr3 36891652 36891858 + 2 NA intron (NM_001329998, intron 7 of 23) intron (NM_001329998, intron 7 of 23) 53299 NM_014831 9881 Hs.170999 NM_014831 ENSG00000168016 TRANK1 LBA1 tetratricopeptide repeat and ankyrin repeat containing 1 protein-coding 317-427 chr6 126680319 126680588 + 2 NA Intergenic L1MEg|LINE|L1 195822 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 264-72 chr11 13613886 13614080 + 2 NA Intergenic Intergenic -54685 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 516-276 chrX 51998330 51998708 + 2 NA Intergenic L1PA17|LINE|L1 64954 NR_102368 101340250 NR_102368 ENSG00000221705 SNORA11E - small nucleolar RNA, H/ACA box 11E snoRNA 173-143 chr8 134125424 134125550 + 2 NA Intergenic Intergenic 238991 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 222-343 chr7 52489837 52490040 + 2 NA Intergenic MamRep605|LTR?|LTR? -545695 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 424-105 chr17 72497241 72497480 + 2 NA intron (NR_036488, intron 1 of 3) THE1B|LTR|ERVL-MaLR 95444 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 661-12 chr11 45550171 45550630 + 2 NA Intergenic Intergenic 115222 NM_003654 8534 Hs.104576 NM_003654 ENSG00000175264 CHST1 C6ST|GST-1|KS6ST|KSGal6ST|KSST carbohydrate sulfotransferase 1 protein-coding 374-23 chr1 220820051 220820411 + 2 NA TTS (NM_022746) TTS (NM_022746) -4040 NR_157260 106481171 NR_157260 RNU6ATAC35P - RNA, U6atac small nuclear 35, pseudogene pseudo 281-99 chr12 128735041 128735196 + 2 NA Intergenic HAL1ME|LINE|L1 88840 NM_145648 121260 Hs.507260 NM_145648 ENSG00000139370 SLC15A4 FP12591|PHT1|PTR4 solute carrier family 15 member 4 protein-coding 286-148 chr16 26462637 26462801 + 2 NA Intergenic L2b|LINE|L2 437482 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 214-155 chr2 33243961 33244117 + 2 NA intron (NM_206943, intron 10 of 33) intron (NM_206943, intron 10 of 33) 109442 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 432-195 chr4 39398121 39398446 + 2 NA Intergenic L1M3|LINE|L1 -8647 NM_175737 152831 Hs.90756 NM_175737 ENSG00000134962 KLB BKL klotho beta protein-coding 442-233 chr5 96940085 96940482 + 2 NA intron (NM_005575, intron 1 of 17) intron (NM_005575, intron 1 of 17) 4203 NM_005575 4012 Hs.527199 NM_005575 ENSG00000113441 LNPEP CAP|IRAP|P-LAP|PLAP leucyl and cystinyl aminopeptidase protein-coding 441-146 chr20 42428828 42429072 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -256533 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 335-417 chr5 27360394 27360667 + 2 NA Intergenic L1MC2|LINE|L1 -111762 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 515-161 chr3 72732809 72733175 + 2 NA Intergenic Intergenic -68743 NR_135531 105377162 Hs.123457 NR_135531 LOC105377162 - uncharacterized LOC105377162 ncRNA 430-309 chr8 73151182 73151530 + 2 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -58184 NM_153225 157869 Hs.439040 NM_153225 ENSG00000164764 SBSPON C8orf84|RPESP somatomedin B and thrombospondin type 1 domain containing protein-coding 508-72 chr16 60509840 60510120 + 2 NA Intergenic Intergenic -150187 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 223-296 chr5 179035267 179035404 + 2 NA TTS (NM_001136116) TTS (NM_001136116) 11531 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 519-96 chr2 18051891 18052242 + 2 NA Intergenic Intergenic 173399 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 364-470 chr9 29279809 29280116 + 2 NA Intergenic L1P4|LINE|L1 -66361 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 467-29 chr10 54863957 54864346 + 2 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) -62860 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 455-22 chr10 6459855 6460197 + 2 NA intron (NM_001282644, intron 14 of 17) intron (NM_001282644, intron 14 of 17) 109710 NR_148966 399716 Hs.737229 NR_148966 LINC02656 - long intergenic non-protein coding RNA 2656 ncRNA 222-160 chr2 5818612 5818805 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -6112 NR_146954 105373400 Hs.97467 NR_146954 ENSG00000237266 LINC01810 - long intergenic non-protein coding RNA 1810 ncRNA 204-117 chr17 34719174 34719350 + 2 NA Intergenic Intergenic 138513 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 291-368 chr5 131396764 131397036 + 2 NA Intergenic Intergenic 132891 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 332-249 chr2 76995879 76996180 + 2 NA intron (NR_110284, intron 3 of 3) L1MEi|LINE|L1 10064 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 214-136 chr18 554742 554906 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -25556 NM_004066 1068 Hs.122511 NM_004066 ENSG00000177143 CETN1 CEN1|CETN centrin 1 protein-coding 345-117 chr12 34650376 34650715 + 2 NA Intergenic ALR/Alpha|Satellite|centr 628049 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 847-24 chr19 12349258 12349782 + 2 NA 3' UTR (NM_030824, exon 6 of 6) 3' UTR (NM_030824, exon 6 of 6) -15887 NM_001363608 147837 Hs.663510 NM_145276 ENSG00000188868 ZNF563 - zinc finger protein 563 protein-coding 112-32 chr3 27441135 27441245 + 2 NA intron (NM_001258380, intron 3 of 23) L1MEc|LINE|L1 15588 NM_003615 9497 Hs.250072 NM_003615 ENSG00000033867 SLC4A7 NBC2|NBC3|NBCN1|SBC2|SLC4A6 solute carrier family 4 member 7 protein-coding 301-492 chrUn_KI270435v1 92660 92849 + 2 NA NA (TGGAA)n|Simple_repeat|Simple_repeat NA NA 276-33 chr1 196066901 196067096 + 2 NA intron (NR_146895, intron 1 of 3) L1ME1|LINE|L1 21717 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 558-175 chr5 45752003 45752425 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -55834 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 536-247 chr9 8147607 8147980 + 2 NA Intergenic L1PA15|LINE|L1 -348015 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 379-67 chr11 114923435 114923722 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 245051 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 179-88 chr4 116017470 116017579 + 2 NA Intergenic HERV3-int|LTR|ERV1 -282201 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 132-65 chr5 165911022 165911116 + 2 NA Intergenic Intergenic 1015301 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 616-131 chr5 44081105 44081549 + 2 NA Intergenic L2a|LINE|L2 -307405 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 334-327 chr22 35084141 35084332 + 2 NA intron (NM_001303508, intron 3 of 4) intron (NM_001303508, intron 3 of 4) 18078 NM_001303508 91464 Hs.567637 NM_001008494 ENSG00000175329 ISX Pix-1|RAXLX intestine specific homeobox protein-coding 297-142 chr14 89661787 89662061 + 2 NA Intergenic Intergenic -42759 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 481-188 chr3 330065 330404 + 2 NA intron (NM_001253388, intron 3 of 24) L1ME3D|LINE|L1 10551 NM_001253388 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 294-114 chr14 49196215 49196382 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 390082 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 203-97 chr18 63633202 63633376 + 2 NA Intergenic L1MA8|LINE|L1 10967 NM_175041 6318 Hs.123035 NM_002974 ENSG00000206073 SERPINB4 LEUPIN|PI11|SCCA-2|SCCA1|SCCA2 serpin family B member 4 protein-coding 172-5 chr1 208697956 208698105 + 2 NA Intergenic L1M4|LINE|L1 -30658 NR_146914 105372893 Hs.568720 NR_146914 ENSG00000232812 LINC01717 - long intergenic non-protein coding RNA 1717 ncRNA 223-200 chr22 44418507 44418696 + 2 NA Intergenic L1MC3|LINE|L1 -24726 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 209-179 chr21 20125574 20125749 + 2 NA Intergenic Intergenic 133024 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 340-148 chr14 56921492 56921739 + 2 NA TTS (NR_146411) TTS (NR_146411) 108457 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 416-229 chr3 110452229 110452559 + 2 NA Intergenic L1MA1|LINE|L1 617565 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 306-554 chr9 135319679 135319929 + 2 NA Intergenic L1ME3|LINE|L1 -23445 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 169-40 chr14 86155719 86155883 + 2 NA Intergenic Intergenic 221123 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 229-183 chr2 67850833 67851037 + 2 NA Intergenic Intergenic -25373 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 364-291 chr3 192685966 192686173 + 2 NA intron (NM_004113, intron 2 of 5) intron (NM_004113, intron 2 of 5) 41472 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 347-158 chr15 91901482 91901700 + 2 NA intron (NR_135775, intron 1 of 10) L1M4a2|LINE|L1 47287 NR_135775 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 371-350 chr6 161092364 161092557 + 2 NA intron (NM_005922, intron 13 of 26) intron (NM_005922, intron 13 of 26) 69522 NR_024277 79992 Hs.664873 NM_024929 ENSG00000279355 AGPAT4-IT1 C6orf59|NCRNA00241 AGPAT4 intronic transcript 1 ncRNA 470-288 chr9 75496356 75496705 + 2 NA Intergenic L2|LINE|L2 -394114 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 314-379 chr3 89150700 89150975 + 2 NA intron (NM_182644, intron 2 of 6) AluJo|SINE|Alu 43216 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 356-159 chr15 25685046 25685345 + 2 NA intron (NM_024490, intron 16 of 20) intron (NM_024490, intron 16 of 20) 163630 NR_039865 100616474 NR_039865 ENSG00000266517 MIR4715 - microRNA 4715 ncRNA 332-567 chr9 74002382 74002700 + 2 NA Intergenic Intergenic -368990 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 341-120 chr12 60070200 60070463 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 380961 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 519-79 chr17 53982709 53983184 + 2 NA Intergenic Intergenic 160019 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 626-13 chr10 8539541 8539945 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 54648 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 368-201 chr18 4666534 4666804 + 2 NA Intergenic L1PA15|LINE|L1 -211362 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 241-109 chr14 52597669 52597840 + 2 NA intron (NM_001353361, intron 1 of 7) intron (NM_001353361, intron 1 of 7) 44918 NR_148417 283554 Hs.416214 NM_001099652 ENSG00000180998 GPR137C TM7SF1L2 G protein-coupled receptor 137C protein-coding 347-43 chr10 16657811 16658071 + 2 NA intron (NM_152724, intron 7 of 7) AluSz6|SINE|Alu -136062 NM_001010908 389941 Hs.676792 NM_001010908 ENSG00000165985 C1QL3 C1QTNF13|C1ql|CTRP13|K100 complement C1q like 3 protein-coding 309-137 chr14 20153760 20153949 + 2 NA Intergenic Intergenic 10118 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 357-12 chr1 106547750 106547975 + 2 NA Intergenic L2a|LINE|L2 -270377 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 214-21 chr1 150264863 150265052 + 2 NA TTS (NR_045033) TTS (NR_045033) 3263 NR_145745 109616989 NR_145745 SNORD13C - small nucleolar RNA, C/D box 13C snoRNA 319-450 chr6 21839422 21839664 + 2 NA intron (NR_015410, intron 4 of 11) intron (NR_015410, intron 4 of 11) 173130 NR_015410 401237 Hs.712707 NR_015410 CASC15 CANT|LINC00340|lnc-SOX4-1 cancer susceptibility 15 ncRNA 270-183 chr2 68851877 68852123 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie 19397 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 572-97 chr2 186468733 186469083 + 2 NA Intergenic Intergenic -17352 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 684-100 chr5 101385903 101386350 + 2 NA Intergenic Intergenic -482844 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 367-185 chr19 51073112 51073408 + 2 NA Intergenic L1MA9|LINE|L1 -8168 NM_001348178 26085 Hs.165296 NM_015596 ENSG00000167759 KLK13 KLK-L4|KLKL4 kallikrein related peptidase 13 protein-coding 555-101 chr2 124085364 124085746 + 2 NA intron (NM_130773, intron 1 of 23) L1MD1|LINE|L1 60268 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 299-273 chr22 48618388 48618571 + 2 NA intron (NM_015381, intron 1 of 3) intron (NM_015381, intron 1 of 3) 42139 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 185-145 chr4 44153801 44153966 + 2 NA Intergenic L1ME4a|LINE|L1 136821 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 309-423 chr5 14157020 14157209 + 2 NA intron (NM_007118, intron 1 of 56) intron (NM_007118, intron 1 of 56) 13772 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 291-59 chr10 90052171 90052362 + 2 NA Intergenic L1M8|LINE|L1 -94893 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 349-256 chr2 79345197 79345412 + 2 NA Intergenic Intergenic 155540 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 166-25 chr14 40323714 40323817 + 2 NA Intergenic Intergenic -630946 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 196-249 chr8 67508587 67508729 + 2 NA intron (NM_020361, intron 5 of 10) L2c|LINE|L2 164824 NR_136224 102724708 Hs.636330 NR_136223 LOC102724708 - uncharacterized LOC102724708 ncRNA 739-11 chr11 13505676 13506283 + 2 NA Intergenic MIRb|SINE|MIR -9804 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 296-303 chr3 106592847 106593019 + 2 NA Intergenic Intergenic 647705 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 212-312 chr7 119667431 119667609 + 2 NA intron (NR_131960, intron 4 of 4) L1M1|LINE|L1 239855 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 318-172 chr14 68435310 68435608 + 2 NA intron (NM_133509, intron 9 of 10) L1PA16|LINE|L1 193328 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 336-10 chr1 35692481 35692769 + 2 NA Intergenic MLT2B1|LTR|ERVL 24286 NM_001348691 127703 Hs.112023 NM_152374 ENSG00000142686 C1orf216 - chromosome 1 open reading frame 216 protein-coding 663-115 chr8 64788358 64788816 + 2 NA intron (NM_004820, intron 1 of 5) MER6A|DNA|TcMar-Tigger 10150 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 118-59 chr8 20667436 20667526 + 2 NA Intergenic Intergenic -52555 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 260-454 chr9 23329475 23329708 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 342808 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 184-187 chrX 3010558 3010704 + 2 NA intron (NM_001011719, intron 2 of 8) intron (NM_001011719, intron 2 of 8) 4018 NM_001011719 347527 Hs.351533 NM_001011719 ENSG00000205667 ARSH sulfatase arylsulfatase family member H protein-coding 285-214 chr2 150790954 150791171 + 2 NA Intergenic Intergenic 162165 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 336-179 chr15 72910167 72910352 + 2 NA Intergenic L3|LINE|CR1 -126501 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 367-207 chr2 84561766 84562029 + 2 NA intron (NM_001370, intron 11 of 76) L1MC4|LINE|L1 45442 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 290-462 chr8 123783083 123783298 + 2 NA intron (NM_144963, intron 8 of 23) AluJo|SINE|Alu 14751 NM_001317917 157769 Hs.459174 NM_144963 ENSG00000176853 FAM91A1 - family with sequence similarity 91 member A1 protein-coding 517-248 chr7 34883193 34883582 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -49056 NR_015356 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 326-381 chr4 111881160 111881473 + 2 NA Intergenic Intergenic -264138 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 259-53 chr10 77212743 77212961 + 2 NA intron (NM_001271519, intron 3 of 28) intron (NM_001271519, intron 3 of 28) 72021 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 322-324 chr3 54879678 54879911 + 2 NA intron (NM_018398, intron 20 of 37) intron (NM_018398, intron 20 of 37) 21461 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 430-48 chr11 5058798 5059142 + 2 NA exon (NM_001005164, exon 1 of 1) exon (NM_001005164, exon 1 of 1) 657 NM_001005164 119678 Hs.553557 NM_001005164 ENSG00000176787 OR52E2 - olfactory receptor family 52 subfamily E member 2 protein-coding 379-390 chrX 21275647 21275968 + 2 NA Intergenic L1M1|LINE|L1 -98611 NM_001168648 22866 Hs.555917 NM_014927 ENSG00000149970 CNKSR2 CNK2|KSR2|MAGUIN|MRXSHG connector enhancer of kinase suppressor of Ras 2 protein-coding 462-211 chr4 99037091 99037492 + 2 NA intron (NM_015143, intron 4 of 10) L1ME4b|LINE|L1 39904 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 296-168 chr16 24270150 24270347 + 2 NA intron (NM_006539, intron 1 of 3) intron (NM_006539, intron 1 of 3) 14695 NM_006539 10368 Hs.7235 NM_006539 ENSG00000006116 CACNG3 - calcium voltage-gated channel auxiliary subunit gamma 3 protein-coding 324-364 chr3 121840843 121841146 + 2 NA intron (NM_018456, intron 1 of 5) intron (NM_018456, intron 1 of 5) 5785 NM_018456 55840 Hs.477325 NM_018456 ENSG00000145088 EAF2 BM040|TRAITS|U19 ELL associated factor 2 protein-coding 352-504 chr7 84743632 84743868 + 2 NA Intergenic L1MEc|LINE|L1 211274 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 232-329 chr6 110481461 110481685 + 2 NA Intergenic L1ME3C|LINE|L1 -4960 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 203-80 chr16 10663355 10663517 + 2 NA intron (NM_144674, intron 5 of 6) intron (NM_144674, intron 5 of 6) 31494 NM_144674 146279 Hs.143519 NM_144674 ENSG00000153060 TEKT5 CT149 tektin 5 protein-coding 296-176 chr16 69042522 69042748 + 2 NA intron (NM_024562, intron 17 of 17) intron (NM_024562, intron 17 of 17) -63018 NM_001199280 3038 Hs.592069 NM_005329 ENSG00000103044 HAS3 - hyaluronan synthase 3 protein-coding 467-264 chr7 56455711 56456082 + 2 NA Intergenic L1ME3A|LINE|L1 -7521 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 282-392 chr5 145636086 145636347 + 2 NA Intergenic MIRb|SINE|MIR 199126 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 490-173 chr21 32057119 32057605 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 28933 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 415-307 chr9 119864591 119864819 + 2 NA Intergenic L1PA16|LINE|L1 -70355 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 189-190 chr7 81536711 81536860 + 2 NA intron (NR_136264, intron 3 of 4) intron (NR_136264, intron 3 of 4) 25034 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 265-396 chr8 113354314 113354498 + 2 NA intron (NM_001363185, intron 1 of 66) intron (NM_001363185, intron 1 of 66) 22746 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 316-32 chr1 175783980 175784155 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -40472 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 361-22 chr1 186844388 186844584 + 2 NA intron (NM_024420, intron 1 of 17) intron (NM_024420, intron 1 of 17) 15537 NM_001311193 5321 Hs.497200 NM_024420 ENSG00000116711 PLA2G4A GURDP|PLA2G4|cPLA2|cPLA2-alpha phospholipase A2 group IVA protein-coding 378-95 chr11 128710911 128711140 + 2 NA intron (NM_002017, intron 1 of 8) MER3|DNA|hAT-Charlie -15002 NR_038908 100507392 Hs.657715 NR_038908 ENSG00000254703 SENCR FLI1-AS1|lncRNA9 smooth muscle and endothelial cell enriched migration/differentiation-associated lncRNA ncRNA 370-190 chr18 9976650 9976855 + 2 NA Intergenic L1PA6|LINE|L1 62736 NM_003574 9218 Hs.165195 NM_003574 ENSG00000101558 VAPA VAP-33|VAP-A|VAP33|hVAP-33 VAMP associated protein A protein-coding 465-203 chr4 72901522 72901792 + 2 NA Intergenic Intergenic 168059 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 368-200 chr18 1079953 1080193 + 2 NA Intergenic Intergenic -152080 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 121-64 chr8 11516131 11516219 + 2 NA intron (NM_001330465, intron 1 of 11).2 L1MB3|LINE|L1 21788 NM_001330465 640 Hs.146591 NM_001715 ENSG00000136573 BLK MODY11 BLK proto-oncogene, Src family tyrosine kinase protein-coding 280-320 chr5 42335956 42336175 + 2 NA Intergenic L1MC1|LINE|L1 -87374 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 315-293 chr21 30390426 30390584 + 2 NA Intergenic Intergenic -5526 NM_181599 140258 Hs.407653 NM_181599 ENSG00000198390 KRTAP13-1 KAP13.1|KRTAP13.1 keratin associated protein 13-1 protein-coding 283-39 chr1 226714153 226714298 + 2 NA intron (NM_002221, intron 2 of 7) MLT1I|LTR|ERVL-MaLR 24950 NM_002221 3707 Hs.528087 NM_002221 ENSG00000143772 ITPKB IP3-3KB|IP3K|IP3K-B|IP3KB|PIG37 inositol-trisphosphate 3-kinase B protein-coding 359-216 chr2 5423847 5424166 + 2 NA Intergenic L1ME3G|LINE|L1 267112 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 151-2 chr1 98895066 98895169 + 2 NA intron (NM_001010861, intron 5 of 5) MSTD|LTR|ERVL-MaLR -109159 NR_033940 100129620 Hs.588631 NR_033940 ENSG00000232825 LOC100129620 - uncharacterized LOC100129620 ncRNA 256-27 chr1 230854413 230854589 + 2 NA intron (NM_001136494, intron 4 of 5) intron (NM_001136494, intron 4 of 5) 1506 NM_001136495 84886 Hs.520494 NM_032800 ENSG00000119280 C1orf198 - chromosome 1 open reading frame 198 protein-coding 481-183 chr21 21900568 21900980 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR 153789 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 534-108 chr2 40068065 40068550 + 2 NA intron (NR_038441, intron 2 of 4) L1PA13|LINE|L1 150673 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 353-201 chr18 1985854 1986106 + 2 NA Intergenic Intergenic 585525 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 299-346 chr4 175703596 175703745 + 2 NA intron (NM_201592, intron 1 of 6) intron (NM_201592, intron 1 of 6) 84006 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 280-58 chr10 85537479 85537695 + 2 NA Intergenic Intergenic -40144 NR_038986 100507470 Hs.585483 NR_038986 ENSG00000234942 GRID1-AS1 - GRID1 antisense RNA 1 ncRNA 318-25 chr1 115742091 115742303 + 2 NA intron (NM_001232, intron 2 of 10) (AT)n|Simple_repeat|Simple_repeat 26608 NM_001232 845 Hs.57975 NM_001232 ENSG00000118729 CASQ2 PDIB2 calsequestrin 2 protein-coding 210-84 chr15 23479831 23479936 + 2 NA Intergenic MER61-int|LTR|ERV1 -32640 NM_001304388 283685 NM_182561 ENSG00000174450 GOLGA6L2 CT105 golgin A6 family like 2 protein-coding 117-8 chr12 133225047 133225157 + 2 NA intron (NM_001191054, intron 6 of 8) intron (NM_001191054, intron 6 of 8) 10734 NM_001191054 647589 Hs.703008 NM_001191054 ENSG00000227059 ANHX - anomalous homeobox protein-coding 456-241 chr5 15849531 15849884 + 2 NA intron (NM_001278317, intron 2 of 3) THE1B|LTR|ERVL-MaLR -85475 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 227-100 chr14 36846172 36846375 + 2 NA intron (NM_001171170, intron 2 of 10) intron (NM_001171170, intron 2 of 10) 106118 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 728 chr1 44147206 44147696 + 2 NA Intergenic MIR|SINE|MIR -5820 NM_001358438 105378952 NM_001358438 ENSG00000283039 KLF18 - Kruppel like factor 18 protein-coding 309-100 chr12 32914471 32914759 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -17769 NM_001005242 5318 Hs.164384 NM_004572 ENSG00000057294 PKP2 ARVD9 plakophilin 2 protein-coding 629-28 chr11 56128767 56129168 + 2 NA Intergenic L1MCc|LINE|L1 6594 NM_001005201 390152 Hs.553745 NM_001005201 ENSG00000181761 OR8H3 OR11-172 olfactory receptor family 8 subfamily H member 3 protein-coding 177-18 chr10 55991839 55991992 + 2 NA Intergenic L1MEc|LINE|L1 -363973 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 386-246 chr3 147177820 147178122 + 2 NA Intergenic Intergenic 214459 NR_033118 84107 Hs.415766 NM_032153 ENSG00000174963 ZIC4 - Zic family member 4 protein-coding 620-70 chr2 164718954 164719381 + 2 NA intron (NM_001365670, intron 7 of 13) intron (NM_001365670, intron 7 of 13) -31390 NR_033309 100337591 Hs.664357 NR_033309 ENSG00000206869 SNORA70F U70F small nucleolar RNA, H/ACA box 70F snoRNA 295-389 chr5 144292009 144292180 + 2 NA intron (NM_001370487, intron 2 of 2) Charlie4a|DNA|hAT-Charlie 86703 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 342-202 chr18 13340357 13340643 + 2 NA intron (NM_181482, intron 2 of 5) L1MB2|LINE|L1 62395 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 433-105 chr17 31647161 31647588 + 2 NA Intergenic LOR1b|LTR|ERV1 71963 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 348-182 chr17 13851631 13851923 + 2 NA Intergenic Intergenic -172721 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 278-206 chr2 43972354 43972563 + 2 NA intron (NM_133259, intron 11 of 37) intron (NM_133259, intron 11 of 37) 23531 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 219-141 chr18 7310237 7310381 + 2 NA Intergenic MLT2B3|LTR|ERVL 79205 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 197-233 chrX 63375943 63376082 + 2 NA Intergenic L1MDb|LINE|L1 -24680 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 384-100 chr13 103269626 103269993 + 2 NA Intergenic Intergenic -155391 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 485-254 chr6 159839956 159840351 + 2 NA Intergenic Intergenic 39877 NM_001271862 154197 Hs.349077 NM_173516 ENSG00000146453 PNLDC1 HsPNLDC1 PARN like, ribonuclease domain containing 1 protein-coding 349-500 chr8 81606684 81606987 + 2 NA intron (NR_146081, intron 7 of 7) intron (NR_146081, intron 7 of 7) 24442 NR_146081 650747 NR_146081 IMPA1P1 IMPA1P inositol monophosphatase 1 pseudogene 1 pseudo 155-74 chr4 73207469 73207580 + 2 NA intron (NM_032217, intron 1 of 33) L1MEc|LINE|L1 15533 NM_001286771 26057 Hs.601206 NM_015574 ENSG00000132466 ANKRD17 GTAR|MASK2|NY-BR-16 ankyrin repeat domain 17 protein-coding 228-64 chr12 18873169 18873316 + 2 NA Intergenic Intergenic 135123 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 528-50 chr11 42563762 42564235 + 2 NA Intergenic AluSz|SINE|Alu -310308 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 499-21 chr10 4723302 4723759 + 2 NA Intergenic Intergenic -45460 NR_024475 100216001 Hs.634869 NR_024475 ENSG00000231298 MANCR LINC00704 mitotically associated long non coding RNA ncRNA 317-62 chr10 87565115 87565316 + 2 NA Intergenic L1MA4A|LINE|L1 57382 NM_001178118 9562 Hs.121260 NM_004897 ENSG00000107789 MINPP1 HIPER1|MINPP2|MIPP multiple inositol-polyphosphate phosphatase 1 protein-coding 466-175 chr3 108780925 108781236 + 2 NA Intergenic Intergenic -23797 NM_032579 84666 Hs.307047 NM_032579 ENSG00000163515 RETNLB FIZZ1|FIZZ2|HXCP2|RELM-beta|RELMb|RELMbeta|XCP2 resistin like beta protein-coding 298-176 chr18 35277533 35277763 + 2 NA intron (NM_001166012, intron 1 of 4) THE1C|LTR|ERVL-MaLR 12581 NM_001166012 100101467 Hs.619840 NM_001112734 ENSG00000186814 ZSCAN30 ZNF-WYM|ZNF397OS|ZNF917 zinc finger and SCAN domain containing 30 protein-coding 379-80 chr13 47363658 47363864 + 2 NA Intergenic L1MA7|LINE|L1 -466685 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 285-179 chr19 46337585 46337788 + 2 NA intron (NM_152795, intron 14 of 14) L2b|LINE|L2 -9401 NM_001204284 5536 Hs.654604 NM_006247 ENSG00000011485 PPP5C PP5|PPP5|PPT protein phosphatase 5 catalytic subunit protein-coding 293-325 chr5 3569507 3569745 + 2 NA Intergenic Intergenic -26206 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 333-298 chr20 11629399 11629722 + 2 NA Intergenic Intergenic 241155 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 320-496 chr6 146683556 146683854 + 2 NA intron (NM_024694, intron 9 of 35) intron (NM_024694, intron 9 of 35) 84733 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 251-378 chr7 92071628 92071762 + 2 NA intron (NM_147185, intron 28 of 49) intron (NM_147185, intron 28 of 49) 62782 NM_000786 1595 Hs.417077 NM_000786 ENSG00000001630 CYP51A1 CP51|CYP51|CYPL1|LDM|P450-14DM|P450L1 cytochrome P450 family 51 subfamily A member 1 protein-coding 666-63 chr2 150253690 150254231 + 2 NA intron (NR_146972, intron 1 of 2) intron (NR_146972, intron 1 of 2) 3047 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 244-247 chr3 189888507 189888723 + 2 NA intron (NM_001329145, intron 9 of 9) intron (NM_001329145, intron 9 of 9) 58693 NR_030642 100126340 NR_030642 ENSG00000216058 MIR944 MIRN944|hsa-mir-944|mir-944 microRNA 944 ncRNA 218-17 chr1 194101815 194101986 + 2 NA Intergenic L1PB4|LINE|L1 797155 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 208-101 chr18 60027528 60027724 + 2 NA Intergenic Intergenic 127630 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 431-32 chr1 246314359 246314684 + 2 NA intron (NM_022743, intron 5 of 11) intron (NM_022743, intron 5 of 11) 102891 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 369-230 chr2 211274698 211274960 + 2 NA Intergenic MER34A1|LTR|ERV1 657258 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 394-4 chr1 56314217 56314486 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -100612 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 322-250 chr2 76431745 76432017 + 2 NA Intergenic Intergenic -554084 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 289-499 chrX 56846069 56846296 + 2 NA Intergenic Intergenic -108598 NR_002308 442454 Hs.663220 NR_002308 UQCRBP1 - ubiquinol-cytochrome c reductase binding protein pseudogene 1 pseudo 416-178 chr2 107041062 107041302 + 2 NA Intergenic L1PA14|LINE|L1 -154073 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 442-274 chr7 40736683 40737085 + 2 NA intron (NM_024728, intron 13 of 14) L1ME3E|LINE|L1 243055 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 277-197 chr2 76618818 76619019 + 2 NA Intergenic L1MA4A|LINE|L1 -367047 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 217-292 chr5 53569143 53569292 + 2 NA intron (NR_134474, intron 1 of 5) intron (NR_134474, intron 1 of 5) 8578 NM_002495 4724 Hs.528222 NM_002495 ENSG00000164258 NDUFS4 AQDQ|CI-18|CI-18 kDa|CI-AQDQ|MC1DN1 NADH:ubiquinone oxidoreductase subunit S4 protein-coding 248-76 chr12 9728030 9728229 + 2 NA intron (NM_001253750, intron 1 of 3) MamGypsy2-LTR|LTR|Gypsy 5170 NM_172004 160365 Hs.560087 NM_172004 ENSG00000184293 CLECL1 DCAL-1|DCAL1 C-type lectin like 1 protein-coding 550-144 chr3 34622608 34622989 + 2 NA Intergenic L1MB4|LINE|L1 771225 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 379-76 chr12 119048375 119048611 + 2 NA intron (NM_194286, intron 1 of 12) intron (NM_194286, intron 1 of 12) 66952 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 304-213 chr18 67102259 67102482 + 2 NA Intergenic Intergenic 20786 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 283-247 chr2 161284215 161284388 + 2 NA Intergenic LTR33|LTR|ERVL -24124 NM_005805 10213 Hs.740477 NM_005805 ENSG00000115233 PSMD14 PAD1|POH1|RPN11 proteasome 26S subunit, non-ATPase 14 protein-coding 378-87 chr11 81283628 81283939 + 2 NA Intergenic Intergenic -520980 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 495-171 chr4 43621544 43621982 + 2 NA Intergenic L1PA15|LINE|L1 -129220 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 210-270 chr7 47028724 47028880 + 2 NA Intergenic MER53|DNA|hAT -331680 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 234-399 chr9 25488838 25489012 + 2 NA Intergenic Intergenic 189933 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 630-43 chr18 78479800 78480295 + 2 NA Intergenic L2c|LINE|L2 -486320 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 657-70 chr4 45049484 45050079 + 2 NA Intergenic L1M5|LINE|L1 -323147 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 281-42 chr10 61297728 61298003 + 2 NA Intergenic Intergenic -154774 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 508-116 chr2 130908383 130908783 + 2 NA intron (NM_001367493, intron 1 of 13) AluSx3|SINE|Alu 71669 NM_015320 50649 Hs.469935 NM_015320 ENSG00000136002 ARHGEF4 ASEF|ASEF1|GEF4|SMIM39|STM6 Rho guanine nucleotide exchange factor 4 protein-coding 224-317 chr8 59815137 59815295 + 2 NA Intergenic Intergenic 466184 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 297-211 chr2 48881322 48881488 + 2 NA Intergenic Intergenic -125681 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 320-16 chr1 82066747 82067052 + 2 NA Intergenic L1ME4c|LINE|L1 264446 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 204-80 chr13 102667512 102667675 + 2 NA intron (NR_160411, intron 26 of 28) intron (NR_160411, intron 26 of 28) 26928 NM_001010977 196541 Hs.508623 NM_001010977 ENSG00000139780 METTL21C C13orf39 methyltransferase like 21C protein-coding 177-111 chr4 38315109 38315247 + 2 NA Intergenic Intergenic -51736 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 185-28 chr10 88510829 88510966 + 2 NA intron (NM_018363, intron 4 of 6) (TTATA)n|Simple_repeat|Simple_repeat 72421 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 201-138 chr21 23209059 23209251 + 2 NA Intergenic Intergenic 129871 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 373-46 chr10 33405638 33405931 + 2 NA Intergenic Intergenic -70879 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 408-141 chr17 75676453 75676754 + 2 NA intron (NR_126037, intron 3 of 8) Charlie1a|DNA|hAT-Charlie 9265 NM_013260 29115 Hs.655088 NM_013260 ENSG00000161526 SAP30BP HCNGP|HTRG|HTRP SAP30 binding protein protein-coding 250-356 chr5 106936145 106936307 + 2 NA intron (NR_104671, intron 2 of 3) intron (NR_104671, intron 2 of 3) 74788 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 230-372 chr8 76257187 76257371 + 2 NA Intergenic L1MA4A|LINE|L1 -149375 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 252-417 chr8 58984831 58984998 + 2 NA intron (NM_014729, intron 1 of 8) L1MB2|LINE|L1 134233 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 679-9 chr1 238381303 238381815 + 2 NA Intergenic Intergenic 104458 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 492-24 chr10 52538556 52538898 + 2 NA Intergenic L1ME3Cz|LINE|L1 -68194 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 517-68 chr13 79698850 79699264 + 2 NA Intergenic L1MD2|LINE|L1 -105329 NR_125785 102724076 Hs.208617 NR_125785 ENSG00000229011 LINC01038 - long intergenic non-protein coding RNA 1038 ncRNA 237-249 chr3 110992751 110992902 + 2 NA Intergenic L1MC4a|LINE|L1 77133 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 275-89 chr12 97109510 97109713 + 2 NA Intergenic Intergenic 202145 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 341-497 chr7 57277768 57277980 + 2 NA Intergenic Intergenic -55700 NR_136269 105375297 Hs.586309 NR_136269 ENSG00000234089 LOC105375297 - uncharacterized LOC105375297 ncRNA 301-239 chr2 200011728 200011964 + 2 NA Intergenic Intergenic -56355 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 249-264 chr3 84713776 84713986 + 2 NA intron (NR_033860, intron 11 of 20) L1PA16|LINE|L1 155694 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 337-63 chr10 84726076 84726386 + 2 NA Intergenic L1MC3|LINE|L1 301062 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 259-213 chr2 126201490 126201675 + 2 NA Intergenic Intergenic -83597 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 346-383 chr5 33007531 33007756 + 2 NA Intergenic Intergenic 60200 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 403-67 chr12 19062537 19062886 + 2 NA Intergenic L1ME3B|LINE|L1 -67022 NM_019012 54477 Hs.188614 NM_019012 ENSG00000052126 PLEKHA5 PEPP-2|PEPP2 pleckstrin homology domain containing A5 protein-coding 419-310 chr9 78446182 78446522 + 2 NA Intergenic AluJo|SINE|Alu 149227 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 637-19 chr11 22453002 22453615 + 2 NA intron (NR_120583, intron 3 of 3) MLT1I|LTR|ERVL-MaLR 38711 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 361-46 chr10 75355837 75356052 + 2 NA intron (NR_038226, intron 2 of 3) MLT1G3|LTR|ERVL-MaLR -45584 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 368-102 chr12 27275098 27275432 + 2 NA intron (NM_015000, intron 1 of 13) intron (NM_015000, intron 1 of 13) 30979 NM_015000 23012 Hs.184523 NM_015000 ENSG00000211455 STK38L NDR2 serine/threonine kinase 38 like protein-coding 266-65 chr11 79879943 79880136 + 2 NA Intergenic Intergenic -439009 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 322-534 chr8 92451560 92451773 + 2 NA Intergenic MIR|SINE|MIR 203828 NR_125827 102724710 Hs.125714 NR_125827 ENSG00000253634 LOC102724710 - uncharacterized LOC102724710 ncRNA 370-341 chr4 54505239 54505538 + 2 NA Intergenic L1ME1|LINE|L1 101743 NR_134657 339978 NR_134657 ENSG00000250456 LINC02260 - long intergenic non-protein coding RNA 2260 ncRNA 286-427 chr7 67676247 67676444 + 2 NA Intergenic Helitron1Na_Mam|RC|Helitron 340369 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 259-223 chr2 214605856 214606017 + 2 NA Intergenic Intergenic 95754 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 155-85 chr5 179621733 179621860 + 2 NA intron (NM_001364234, intron 3 of 14).2 intron (NM_001364234, intron 3 of 14).2 1605 NM_001364243 3187 Hs.604001 NM_005520 ENSG00000169045 HNRNPH1 HNRPH|HNRPH1|hnRNPH heterogeneous nuclear ribonucleoprotein H1 protein-coding 274-278 chr4 30671524 30671687 + 2 NA Intergenic L1MC1|LINE|L1 -48764 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 297-432 chr7 41718864 41719080 + 2 NA intron (NR_027118, intron 2 of 3) intron (NR_027118, intron 2 of 3) -15882 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 350-132 chr14 50030085 50030340 + 2 NA intron (NR_131171, intron 6 of 8) MLT1B|LTR|ERVL-MaLR -22692 NR_126498 283551 Hs.292580 NM_001012706 ENSG00000214900 LINC01588 C14orf182 long intergenic non-protein coding RNA 1588 ncRNA 541-154 chr3 69526490 69526890 + 2 NA Intergenic MIRb|SINE|MIR -140602 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 268-168 chr18 75603360 75603562 + 2 NA Intergenic L1MA6|LINE|L1 108942 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 267-168 chr2 2494484 2494709 + 2 NA Intergenic Intergenic -163321 NM_001329849 23040 Hs.434418 NM_015025 ENSG00000186487 MYT1L MRD39|NZF1|ZC2H2C2|ZC2HC4B|myT1-L myelin transcription factor 1 like protein-coding 292-284 chr3 48788734 48788962 + 2 NA intron (NM_001321989, intron 3 of 9) MLT1A0|LTR|ERVL-MaLR 59026 NM_001321989 5576 Hs.631923 NM_004157 ENSG00000114302 PRKAR2A PKR2|PRKAR2 protein kinase cAMP-dependent type II regulatory subunit alpha protein-coding 574-72 chr2 51412210 51412613 + 2 NA intron (NR_135237, intron 4 of 10) intron (NR_135237, intron 4 of 10) 379810 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 294-477 chr8 128148725 128148995 + 2 NA Intergenic Intergenic -1256 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 162-126 chr8 7057565 7057657 + 2 NA promoter-TSS (NM_021010) promoter-TSS (NM_021010) -872 NM_021010 1670 Hs.655233 NM_021010 ENSG00000164816 DEFA5 DEF5|HD-5 defensin alpha 5 protein-coding 297-325 chr4 57185805 57186037 + 2 NA intron (NR_034081, intron 1 of 4) intron (NR_034081, intron 1 of 4) -75536 NM_001553 3490 Hs.479808 NM_001553 ENSG00000163453 IGFBP7 AGM|FSTL2|IBP-7|IGFBP-7|IGFBP-7v|IGFBPRP1|MAC25|PSF|RAMSVPS|TAF insulin like growth factor binding protein 7 protein-coding 637-5 chr1 104855024 104855470 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 763688 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 377-382 chr7 111938227 111938595 + 2 NA intron (NM_001363540, intron 11 of 52) intron (NM_001363540, intron 11 of 52) 129906 NR_103806 100506413 Hs.677513 NR_103806 ENSG00000225572 DOCK4-AS1 - DOCK4 antisense RNA 1 ncRNA 565-8 chr1 178553342 178553784 + 2 NA Intergenic AluJb|SINE|Alu 10767 NR_033186 400798 Hs.668085 NM_207467 ENSG00000213057 C1orf220 - chromosome 1 open reading frame 220 (putative) ncRNA 353-348 chr3 191393275 191393529 + 2 NA 3' UTR (NM_174908, exon 11 of 11) 3' UTR (NM_174908, exon 11 of 11) -32122 NR_120606 103344926 NR_120606 LINCR-0002 - uncharacterized LincR-0002 ncRNA 249-140 chr16 52822303 52822544 + 2 NA Intergenic Intergenic -215448 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 380-119 chr14 49248622 49248846 + 2 NA Intergenic Intergenic 337646 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 224-216 chr4 23563023 23563211 + 2 NA Intergenic L1MC3|LINE|L1 318175 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 379-386 chr9 112995254 112995523 + 2 NA Intergenic MLT2B4|LTR|ERVL 16804 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 287-240 chr3 2524161 2524323 + 2 NA intron (NM_175607, intron 3 of 24) L1MB8|LINE|L1 285413 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 233-56 chr11 42778928 42779117 + 2 NA Intergenic Intergenic 490347 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 491-75 chr15 55019539 55019897 + 2 NA Intergenic MIR|SINE|MIR -37029 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 360-35 chr10 52516418 52516695 + 2 NA Intergenic MIRb|SINE|MIR -46023 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 191-211 chr8 87037721 87037855 + 2 NA intron (NM_173538, intron 4 of 10) HAL1|LINE|L1 171373 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 353-402 chr5 27420721 27420942 + 2 NA Intergenic L1MA3|LINE|L1 -51461 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 325-255 chr2 29473174 29473423 + 2 NA intron (NM_004304, intron 4 of 28) L1ME3|LINE|L1 2079 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 447-224 chr5 167113832 167114218 + 2 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) 40783 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 696-53 chr18 40989998 40990690 + 2 NA Intergenic Intergenic 530333 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 252-105 chr13 99253723 99253911 + 2 NA TTS (NM_005292) TTS (NM_005292) 4611 NM_005292 2841 Hs.741589 NM_005292 ENSG00000125245 GPR18 - G protein-coupled receptor 18 protein-coding 332-566 chr9 36524855 36525126 + 2 NA Intergenic AluSc|SINE|Alu -47872 NM_001256685 9833 Hs.184339 NM_014791 ENSG00000165304 MELK HPK38 maternal embryonic leucine zipper kinase protein-coding 456-101 chr15 27798118 27798446 + 2 NA intron (NM_001300984, intron 22 of 22) intron (NM_001300984, intron 22 of 22) 301033 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 381-403 chr9 24998950 24999300 + 2 NA Intergenic Intergenic -453228 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 346-204 chr18 3684637 3684967 + 2 NA intron (NM_001308390, intron 4 of 10) intron (NM_001308390, intron 4 of 10) 81065 NR_119377 84777 Hs.659053 NM_032691 DLGAP1-AS2 - DLGAP1 antisense RNA 2 ncRNA 272-320 chr4 166705171 166705404 + 2 NA Intergenic AluJo|SINE|Alu 529139 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 314-405 chr4 15619768 15619993 + 2 NA intron (NR_036464, intron 10 of 11) L1M3|LINE|L1 35477 NM_012161 26234 Hs.643433 NM_012161 ENSG00000118564 FBXL5 FBL4|FBL5|FLR1 F-box and leucine rich repeat protein 5 protein-coding 303-376 chr5 131966761 131966952 + 2 NA intron (NM_015256, intron 16 of 20) intron (NM_015256, intron 16 of 20) -21193 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 223-83 chr14 47288913 47289111 + 2 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 54234 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 398-179 chr2 188457205 188457545 + 2 NA intron (NM_016315, intron 2 of 11) THE1B|LTR|ERVL-MaLR 159883 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 208-168 chr3 99300151 99300318 + 2 NA Intergenic Intergenic -338360 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 399-13 chr1 164443744 164444122 + 2 NA Intergenic Intergenic -115427 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 364-364 chr5 128918803 128919032 + 2 NA Intergenic Intergenic -46210 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 309-231 chr19 58445103 58445386 + 2 NA Intergenic Intergenic -5091 NM_003433 7691 Hs.156169 NM_003433 ENSG00000131849 ZNF132 pHZ-12 zinc finger protein 132 protein-coding 234-67 chr11 114690131 114690306 + 2 NA intron (NM_182495, intron 2 of 5) L1PA17|LINE|L1 11691 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 546-112 chr2 119871912 119872382 + 2 NA intron (NM_002830, intron 3 of 26) (TTGATT)n|Simple_repeat|Simple_repeat 112225 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 380-403 chr8 115970045 115970415 + 2 NA intron (NR_046215, intron 9 of 13) MamTip2|DNA|hAT-Tip100 -301255 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 442-263 chr6 137179818 137180152 + 2 NA Intergenic Intergenic -6341 NM_052962 116379 Hs.126891 NM_052962 ENSG00000164485 IL22RA2 CRF2-10|CRF2-S1|CRF2X|IL-22BP|IL-22R-alpha-2|IL-22RA2|ZCYTOR16 interleukin 22 receptor subunit alpha 2 protein-coding 346-143 chr14 82190014 82190246 + 2 NA Intergenic L1M1|LINE|L1 -446992 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 462-56 chr12 14056649 14057070 + 2 NA Intergenic MIRb|SINE|MIR -76503 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 427-144 chr21 28182461 28182711 + 2 NA intron (NR_126012, intron 3 of 5) THE1D-int|LTR|ERVL-MaLR 46081 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 359-519 chrX 47401177 47401370 + 2 NA intron (NM_003446, intron 1 of 3) ERVL-B4-int|LTR|ERVL 12623 NR_003710 100124540 Hs.693443 NR_003710 ENSG00000221459 SNORA11C - small nucleolar RNA, H/ACA box 11C snoRNA 240-125 chr13 91043638 91043835 + 2 NA Intergenic Intergenic 45881 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 213-61 chr11 101107447 101107582 + 2 NA intron (NM_000926, intron 2 of 7) intron (NM_000926, intron 2 of 7) 21549 NM_001202474 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 628-68 chr2 56770835 56771277 + 2 NA Intergenic L1MB7|LINE|L1 -585286 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 477-76 chr12 32387563 32387839 + 2 NA Intergenic Intergenic -11857 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 194-28 chr11 26132002 26132189 + 2 NA Intergenic Intergenic -57028 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 271-221 chr2 214691970 214692137 + 2 NA Intergenic L1M4|LINE|L1 117630 NR_104216 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 320-557 chr8 102372064 102372342 + 2 NA intron (NM_001282873, intron 1 of 58) intron (NM_001282873, intron 1 of 58) 40486 NM_001282873 51366 Hs.492445 NM_015902 ENSG00000104517 UBR5 DD5|EDD|EDD1|HYD ubiquitin protein ligase E3 component n-recognin 5 protein-coding 350-366 chr4 148896813 148897005 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 45469 NR_134681 105377480 Hs.148699 NR_134681 ENSG00000249317 LOC105377480 - uncharacterized LOC105377480 ncRNA 220-16 chr1 147382216 147382379 + 2 NA non-coding (NR_038423, exon 4 of 4) non-coding (NR_038423, exon 4 of 4) 135578 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 334-577 chr9 111087953 111088164 + 2 NA Intergenic L1MEf|LINE|L1 -49060 NM_001351397 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 596-151 chr7 52517585 52518145 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -517768 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 244-218 chr3 25473725 25473909 + 2 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 15507 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 247-280 chr3 178369833 178370002 + 2 NA Intergenic L1PB|LINE|L1 -49284 NR_046786 100874330 Hs.201902 NR_046786 ENSG00000223941 LINC01014 KCNMB2-IT1 long intergenic non-protein coding RNA 1014 ncRNA 313-43 chr10 43767483 43767710 + 2 NA Intergenic L1PB3|LINE|L1 11229 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 171-87 chr4 24381604 24381748 + 2 NA intron (NM_001330752, intron 1 of 13) intron (NM_001330752, intron 1 of 13) 91229 NM_001354825 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 121-28 chr2 110928540 110928627 + 2 NA intron (NM_001371254, intron 11 of 18) intron (NM_001371254, intron 11 of 18) 187005 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 225-84 chr13 64804676 64804828 + 2 NA Intergenic Intergenic -728741 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 369-141 chr15 97554897 97555234 + 2 NA intron (NR_110756, intron 2 of 3) L1ME4a|LINE|L1 5633 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 878-23 chr19 51214187 51214862 + 2 NA Intergenic L1M4|LINE|L1 -7515 NR_107041 102465873 NR_107041 ENSG00000278617 MIR8074 hsa-mir-8074 microRNA 8074 ncRNA 325-318 chr21 17856239 17856549 + 2 NA intron (NR_024354, intron 1 of 2) LTR16C|LTR|ERVL 29214 NR_024354 54075 Hs.404306 NR_024354 CHODL-AS1 C21orf39|NCRNA00157 CHODL antisense RNA 1 ncRNA 556-76 chr16 79961876 79962394 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 166886 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 356-335 chr3 154033349 154033555 + 2 NA intron (NR_037901, intron 2 of 3) intron (NR_037901, intron 2 of 3) -87551 NM_001251962 26084 Hs.240845 NM_015595 ENSG00000114790 ARHGEF26 CSGEF|HMFN1864|SGEF Rho guanine nucleotide exchange factor 26 protein-coding 226-62 chr11 130695520 130695674 + 2 NA intron (NM_001271983, intron 1 of 2) intron (NM_001271983, intron 1 of 2) 22641 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 365-168 chr18 78473844 78474088 + 2 NA Intergenic Intergenic -480239 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 278-440 chr8 135398572 135398762 + 2 NA Intergenic Intergenic -58789 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 399-76 chr13 37646896 37647132 + 2 NA intron (NM_001135956, intron 7 of 10) intron (NM_001135956, intron 7 of 10) -48170 NM_001286666 10631 Hs.136348 NM_006475 ENSG00000133110 POSTN OSF-2|OSF2|PDLPOSTN|PN periostin protein-coding 272-146 chr16 79859710 79859903 + 2 NA Intergenic Intergenic 64557 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 257-230 chr2 233313906 233314048 + 2 NA intron (NM_000541, intron 2 of 15) AluJb|SINE|Alu 6161 NM_000541 6295 Hs.32721 NM_000541 ENSG00000130561 SAG RP47|S-AG S-antigen visual arrestin protein-coding 425-68 chr12 39513920 39514221 + 2 NA Intergenic L1M1|LINE|L1 -70950 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 506-160 chr2 196367942 196368290 + 2 NA intron (NM_020760, intron 2 of 28) L1MA3|LINE|L1 -5939 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 289-198 chr19 32024321 32024600 + 2 NA Intergenic L1PB4|LINE|L1 -1402 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 318-389 chr4 36501885 36502072 + 2 NA intron (NR_149124, intron 3 of 4) L1MA6|LINE|L1 -75550 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 227-19 chr1 187788655 187788797 + 2 NA Intergenic L2a|LINE|L2 345098 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 215-260 chr5 85959264 85959458 + 2 NA Intergenic Intergenic -323083 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 350-340 chr4 31449742 31449933 + 2 NA Intergenic L1MB7|LINE|L1 -56707 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 163-47 chr14 48235863 48235972 + 2 NA Intergenic Intergenic -440903 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 564-16 chr10 45495177 45495657 + 2 NA intron (NM_001282866, intron 2 of 7) Charlie1a|DNA|hAT-Charlie 39954 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 467-36 chr10 116822457 116822831 + 2 NA intron (NM_001330164, intron 2 of 12) L3|LINE|CR1 4924 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 410-118 chr19 29560234 29560475 + 2 NA intron (NM_001146339, intron 4 of 4) intron (NM_001146339, intron 4 of 4) 33770 NM_001146339 342865 Hs.451618 NM_001146339 ENSG00000187135 VSTM2B - V-set and transmembrane domain containing 2B protein-coding 340-354 chr3 22188226 22188446 + 2 NA Intergenic Intergenic 231197 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 368-223 chr2 3044587 3044943 + 2 NA intron (NR_110228, intron 3 of 6) intron (NR_110228, intron 3 of 6) 81261 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 560-66 chr17 49446456 49446783 + 2 NA Intergenic Intergenic 15130 NR_110805 101927207 Hs.638402 NR_110805 ENSG00000249497 LINC02075 - long intergenic non-protein coding RNA 2075 ncRNA 496-60 chr12 101539200 101539481 + 2 NA Intergenic HAL1|LINE|L1 -55591 NM_206821 4604 Hs.654589 NM_002465 ENSG00000196091 MYBPC1 LCCS4|MYBPCC|MYBPCS myosin binding protein C, slow type protein-coding 347-376 chr5 18042347 18042665 + 2 NA Intergenic L1M5|LINE|L1 235232 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 276-475 chr9 27704658 27704860 + 2 NA Intergenic Intergenic -130893 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 578-98 chr2 222370913 222371331 + 2 NA Intergenic Intergenic 50461 NR_136640 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 558-195 chr7 15664028 15664506 + 2 NA intron (NM_005924, intron 1 of 2) intron (NM_005924, intron 1 of 2) -3680 NR_134258 105375166 Hs.658822 NR_134258 ENSG00000237070 LOC105375166 - uncharacterized LOC105375166 ncRNA 214-76 chr12 24768426 24768594 + 2 NA Intergenic Intergenic 133712 NM_001178094 586 Hs.438993 NM_005504 ENSG00000060982 BCAT1 BCATC|BCT1|ECA39|MECA39|PNAS121|PP18 branched chain amino acid transaminase 1 protein-coding 432-245 chr6 51095298 51095604 + 2 NA Intergenic L1MA10|LINE|L1 276580 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 228-234 chr4 25483632 25483804 + 2 NA Intergenic Intergenic 85628 NR_134641 101929161 Hs.125638 NR_134641 LOC101929161 - uncharacterized LOC101929161 ncRNA 357-159 chr17 78514767 78515088 + 2 NA exon (NM_173628, exon 26 of 81) exon (NM_173628, exon 26 of 81) 30017 NR_102401 100996295 Hs.615304 NR_102401 DNAH17-AS1 - DNAH17 antisense RNA 1 ncRNA 364-9 chr1 43013937 43014292 + 2 NA Intergenic L1PB2|LINE|L1 55065 NR_033967 440584 Hs.260928 NR_033967 ENSG00000227533 SLC2A1-AS1 - SLC2A1 antisense RNA 1 ncRNA 404-169 chr2 115712558 115712871 + 2 NA intron (NM_001321912, intron 8 of 25) MER58D|DNA|hAT-Charlie 368899 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 320-107 chr11 132824656 132824865 + 2 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 118877 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 616-160 chr7 48682869 48683322 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -241452 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 393-340 chr7 111193469 111193784 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 102499 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 323-194 chr18 7376843 7377133 + 2 NA Intergenic LTR41|LTR|ERVL 84018 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 408-168 chr2 136567960 136568267 + 2 NA Intergenic Intergenic -197432 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 266-153 chr18 4991654 4991859 + 2 NA Intergenic MER52-int|LTR|ERV1 -89426 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 275-292 chr5 64021450 64021619 + 2 NA Intergenic Intergenic -59242 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 412-267 chr5 141105361 141105616 + 2 NA Intergenic Intergenic 5246 NM_018937 56132 Hs.508987 NM_018937 ENSG00000113205 PCDHB3 PCDH-BETA3 protocadherin beta 3 protein-coding 511-178 chr3 139010218 139010696 + 2 NA Intergenic L1M1|LINE|L1 -4189 NM_001134659 729627 Hs.121314 NM_001134659 ENSG00000206260 PRR23A - proline rich 23A protein-coding 803-36 chr4 95968426 95969073 + 2 NA Intergenic LTR49|LTR|ERV1 128656 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 478-168 chr21 25273981 25274378 + 2 NA Intergenic Intergenic 157522 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 363-111 chr12 119572171 119572443 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -21467 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 346-301 chr3 20777357 20777602 + 2 NA Intergenic MIRb|SINE|MIR 435011 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 292-174 chr17 69705458 69705720 + 2 NA intron (NR_109972, intron 3 of 4) HERV16-int|LTR|ERVL 111602 NR_109972 101928122 Hs.579342 NR_109971 ENSG00000227517 LINC01483 - long intergenic non-protein coding RNA 1483 ncRNA 440-20 chr10 15722815 15723115 + 2 NA Intergenic Intergenic -2630 NM_001291494 8516 Hs.171311 NM_003638 ENSG00000077943 ITGA8 - integrin subunit alpha 8 protein-coding 244-113 chr15 97703670 97703855 + 2 NA Intergenic L1MD2|LINE|L1 -143064 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 538-195 chr5 50575787 50576256 + 2 NA Intergenic Intergenic -89910 NM_001178055 79668 Hs.369581 NM_024615 ENSG00000151883 PARP8 ARTD16|pART16 poly(ADP-ribose) polymerase family member 8 protein-coding 356-281 chr20 7011012 7011232 + 2 NA Intergenic Intergenic 243080 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 343-209 chr18 76769856 76770146 + 2 NA Intergenic AluJr|SINE|Alu 52294 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 120-24 chr16 80976318 80976381 + 2 NA intron (NR_147843, intron 1 of 1) intron (NR_147843, intron 1 of 1) 21327 NM_001351973 56942 Hs.55028 NM_020188 ENSG00000103121 CMC2 2310061C15Rik|C16orf61|DC13 C-X9-C motif containing 2 protein-coding 705-21 chr12 33572515 33572953 + 2 NA Intergenic LTR37B|LTR|ERV1 -132915 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 537-264 chr8 130779733 130780179 + 2 NA TTS (NM_001115) TTS (NM_001115) 260953 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 637-29 chr12 59926302 59926719 + 2 NA Intergenic Intergenic 237140 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 375-46 chr10 48849494 48849725 + 2 NA intron (NM_020945, intron 39 of 61) intron (NM_020945, intron 39 of 61) 64626 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 413-188 chr3 74971400 74971655 + 2 NA Intergenic L2a|LINE|L2 -242949 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 236-119 chr14 79191370 79191582 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) -8506 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 166-83 chr4 30448854 30448992 + 2 NA Intergenic L1ME3A|LINE|L1 -271446 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 339-547 chr7 138164434 138164720 + 2 NA Intergenic MER61E|LTR|ERV1 40819 NR_039678 100616226 NR_039678 ENSG00000284028 MIR4468 - microRNA 4468 ncRNA 317-298 chr3 41546655 41546948 + 2 NA intron (NR_136342, intron 30 of 34) L1MEf|LINE|L1 347296 NM_001904 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 307-69 chr10 98717232 98717496 + 2 NA intron (NM_021828, intron 5 of 11) Tigger1|DNA|TcMar-Tigger 207204 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 283-287 chr3 34438502 34438776 + 2 NA Intergenic Intergenic 640009 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 183-151 chr7 124471543 124471700 + 2 NA Intergenic L1ME1|LINE|L1 -119525 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 353-544 chr8 138989238 138989561 + 2 NA Intergenic Intergenic -75358 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 391-246 chr3 185111448 185111817 + 2 NA intron (NM_001025266, intron 1 of 1) L1MEc|LINE|L1 41428 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 315-54 chr10 58691149 58691448 + 2 NA intron (NM_001080512, intron 2 of 20) intron (NM_001080512, intron 2 of 20) -23717 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 483-178 chr3 143458323 143458615 + 2 NA intron (NM_173653, intron 12 of 15) L1MD2|LINE|L1 116223 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 185-199 chr8 74010293 74010400 + 2 NA intron (NM_001195797, intron 2 of 3) intron (NM_001195797, intron 2 of 3) 18954 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 325-214 chr17 19833827 19834085 + 2 NA intron (NM_014683, intron 10 of 26) L1M4a2|LINE|L1 33980 NM_001142610 9706 Hs.168762 NM_014683 ENSG00000083290 ULK2 ATG1B|Unc51.2 unc-51 like autophagy activating kinase 2 protein-coding 652-48 chr16 54827730 54828302 + 2 NA Intergenic L1ME2|LINE|L1 20217 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 373 chr1 7619222 7619466 + 2 NA intron (NM_001349608, intron 5 of 21) MLT1L|LTR|ERVL-MaLR -50386 NM_001349620 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 180-111 chr4 37278948 37279092 + 2 NA intron (NM_001144990, intron 1 of 6) GA-rich|Low_complexity|Low_complexity 34277 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 363-304 chr3 177353147 177353470 + 2 NA Intergenic L2a|LINE|L2 58866 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 510-69 chr14 24481162 24481503 + 2 NA intron (NR_110032, intron 2 of 2) MIR|SINE|MIR 26933 NM_001836 1215 Hs.135626 NM_001836 ENSG00000092009 CMA1 CYH|MCT1|chymase chymase 1 protein-coding 301-273 chr3 4101147 4101414 + 2 NA Intergenic L1MA6|LINE|L1 -202024 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 247-266 chr3 95946858 95947041 + 2 NA Intergenic L1MA6|LINE|L1 -263756 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 248-444 chrX 98107316 98107556 + 2 NA Intergenic L1MD3|LINE|L1 -542901 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 417-30 chr10 55487786 55488108 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -111095 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 216-242 chr4 20450871 20451045 + 2 NA intron (NM_001289135, intron 4 of 35) intron (NM_001289135, intron 4 of 35) 58769 NR_037876 100505893 Hs.665305 NR_037876 ENSG00000248228 SLIT2-IT1 - SLIT2 intronic transcript 1 ncRNA 611-103 chr3 161299486 161299870 + 2 NA Intergenic Intergenic 72405 NM_001040100 165679 Hs.369104 NM_145035 ENSG00000196542 SPTSSB ADMP|C3orf57|SSSPTB serine palmitoyltransferase small subunit B protein-coding 384-74 chr12 23602799 23603035 + 2 NA intron (NM_152989, intron 12 of 17) intron (NM_152989, intron 12 of 17) -18331 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 361-128 chr13 53161533 53161808 + 2 NA Intergenic Intergenic -9770 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 291-213 chr2 61607182 61607388 + 2 NA Intergenic L1ME4b|LINE|L1 -68929 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 452-72 chr13 103616929 103617292 + 2 NA Intergenic Intergenic 191910 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 375-457 chr9 101413189 101413437 + 2 NA Intergenic Intergenic 14459 NM_001278240 7743 Hs.50123 NM_003452 ENSG00000136870 ZNF189 - zinc finger protein 189 protein-coding 241-217 chr20 23520139 23520316 + 2 NA intron (NR_001279, intron 1 of 3) intron (NR_001279, intron 1 of 3) 1081 NR_001279 164380 Hs.400007 NR_001279 ENSG00000204663 CST13P CSTT|CTES6 cystatin 13, pseudogene pseudo 269-255 chr3 95629101 95629320 + 2 NA Intergenic L1ME2|LINE|L1 53983 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 363-53 chr10 60668985 60669343 + 2 NA intron (NM_001204403, intron 1 of 43) intron (NM_001204403, intron 1 of 43) 64364 NM_001204403 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 238-407 chr8 142050379 142050595 + 2 NA Intergenic L1MD1|LINE|L1 -125852 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 192-86 chr17 72542906 72543061 + 2 NA intron (NR_036488, intron 1 of 3) intron (NR_036488, intron 1 of 3) 49821 NR_152515 100499467 Hs.157726 NR_036488 ENSG00000227036 LINC00673 ERRLR01|HI-LNC75|HILNC75|LUCAIR1|SLNCR|SLNCR1 long intergenic non-protein coding RNA 673 ncRNA 691-4 chr1 112352362 112352897 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -43585 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 397-222 chr4 59362475 59362696 + 2 NA Intergenic L1PA13|LINE|L1 349012 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 249-427 chr8 117120935 117121106 + 2 NA intron (NM_001172815, intron 2 of 10) L1MB1|LINE|L1 -13975 NM_001172814 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 770-52 chr3 178029640 178030399 + 2 NA Intergenic Intergenic 213154 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 638-109 chr4 167048342 167048769 + 2 NA intron (NM_001204354, intron 2 of 9) intron (NM_001204354, intron 2 of 9) 185871 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 246-156 chr17 61108263 61108446 + 2 NA intron (NM_001330413, intron 23 of 25) L1MDa|LINE|L1 259350 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 259-273 chr3 191883672 191883832 + 2 NA Intergenic Intergenic -354878 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 357-397 chr6 148814072 148814402 + 2 NA intron (NM_005715, intron 1 of 7) intron (NM_005715, intron 1 of 7) 67207 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 200-240 chr6 67192689 67192882 + 2 NA Intergenic L2c|LINE|L2 -862566 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 372-240 chr2 83741935 83742208 + 2 NA Intergenic Intergenic 219257 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 303-478 chr8 135354213 135354397 + 2 NA Intergenic Intergenic -103151 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 487-16 chr1 110817302 110817776 + 2 NA Intergenic L1PA15|LINE|L1 -53660 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 257-407 chr8 75042661 75042824 + 2 NA Intergenic Intergenic 42587 NM_001286778 83690 Hs.436542 NM_031461 ENSG00000121005 CRISPLD1 CRISP-10|CRISP10|LCRISP1 cysteine rich secretory protein LCCL domain containing 1 protein-coding 267-36 chr1 242497703 242497955 + 2 NA intron (NM_001320272, intron 2 of 10) L2a|LINE|L2 26867 NM_152666 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 198-16 chr1 213640283 213640415 + 2 NA Intergenic L1MD2|LINE|L1 -284400 NR_046189 100861504 Hs.742586 NR_046189 LINC00538 PROX1UT|Yiya long intergenic non-protein coding RNA 538 ncRNA 252-100 chr13 39811945 39812125 + 2 NA Intergenic Intergenic -147900 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 347-463 chr7 39333764 39333988 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) -4742 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 137-82 chr6 141305843 141305965 + 2 NA Intergenic Intergenic 622090 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 420-147 chr2 115391161 115391410 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 47470 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 225-75 chr12 97928089 97928241 + 2 NA Intergenic LTR16E2|LTR|ERVL 10956 NR_039716 100616287 NR_039716 ENSG00000265861 MIR4495 - microRNA 4495 ncRNA 352-299 chr22 24713881 24714131 + 2 NA Intergenic AluSg4|SINE|Alu -50495 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 320-74 chr10 130917227 130917399 + 2 NA Intergenic L1MC3|LINE|L1 45355 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 573-11 chr1 175690528 175690949 + 2 NA intron (NM_003285, intron 1 of 22) L2a|LINE|L2 52857 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 345-473 chr6 140110590 140110829 + 2 NA Intergenic Intergenic -94543 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 321-561 chr8 88658411 88658597 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -331021 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 442-189 chr3 85431060 85431439 + 2 NA intron (NM_001167674, intron 1 of 9) Tigger3a|DNA|TcMar-Tigger 45539 NR_049870 100847077 NR_049870 ENSG00000264084 MIR5688 - microRNA 5688 ncRNA 394-166 chr2 57046303 57046618 + 2 NA Intergenic Intergenic -860690 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 311-330 chr3 12344332 12344639 + 2 NA intron (NM_001330615, intron 1 of 5) intron (NM_001330615, intron 1 of 5) -6932 NM_001354668 5468 Hs.162646 NM_005037 ENSG00000132170 PPARG CIMT1|GLM1|NR1C3|PPARG1|PPARG2|PPARgamma peroxisome proliferator activated receptor gamma protein-coding 534-62 chr12 61113574 61114071 + 2 NA Intergenic L1MC2|LINE|L1 1079017 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 290-147 chr15 95226839 95227019 + 2 NA Intergenic Intergenic 100171 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 166-3 chr1 112083137 112083243 + 2 NA Intergenic Intergenic 92654 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 374-85 chr13 37315523 37315792 + 2 NA Intergenic L1PREC2|LINE|L1 169127 NR_125762 103695431 Hs.550637 NR_125762 ENSG00000230390 LINC01048 - long intergenic non-protein coding RNA 1048 ncRNA 217-29 chr1 248524461 248524636 + 2 NA Intergenic Intergenic 2901 NM_001013355 391211 Hs.553784 NM_001013355 ENSG00000188558 OR2G6 - olfactory receptor family 2 subfamily G member 6 protein-coding 561-84 chr18 42997708 42998095 + 2 NA intron (NM_001272077, intron 2 of 5) intron (NM_001272077, intron 2 of 5) 117784 NM_002930 6014 Hs.464985 NM_002930 ENSG00000152214 RIT2 RIBA|RIN|ROC2 Ras like without CAAX 2 protein-coding 717-48 chr2 196478152 196478855 + 2 NA intron (NM_001348768, intron 1 of 28) intron (NM_001348768, intron 1 of 28) 114480 NM_020760 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 539-133 chr20 40360864 40361377 + 2 NA Intergenic L1PA13|LINE|L1 328116 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 315-92 chr11 104628922 104629140 + 2 NA Intergenic Intergenic -19729 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 176-67 chr20 16001268 16001415 + 2 NA intron (NM_001351663, intron 15 of 17) intron (NM_001351663, intron 15 of 17) -15459 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 324-497 chr7 56448438 56448718 + 2 NA promoter-TSS (NR_029420) promoter-TSS (NR_029420) -203 NR_029420 650226 Hs.448401 NR_029420 LOC650226 - ankyrin repeat domain 26 pseudogene pseudo 314-475 chr5 111853077 111853374 + 2 NA intron (NM_001142474, intron 2 of 3) L1MC2|LINE|L1 -59283 NR_046678 100873948 Hs.147716 NR_046678 ENSG00000250095 NREP-AS1 - NREP antisense RNA 1 ncRNA 235-395 chr9 101684804 101685008 + 2 NA intron (NM_133445, intron 2 of 8) intron (NM_133445, intron 2 of 8) 53674 NM_133445 116443 Hs.654783 NM_133445 ENSG00000198785 GRIN3A GluN3A|NMDAR-L|NR3A glutamate ionotropic receptor NMDA type subunit 3A protein-coding 385-289 chr5 11936013 11936236 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -31678 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 385-166 chr2 32278260 32278477 + 2 NA intron (NM_032312, intron 1 of 5) CpG 464 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 397-81 chr14 43280065 43280427 + 2 NA Intergenic L1ME1|LINE|L1 1227037 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 198-87 chr17 20805902 20806023 + 2 NA Intergenic L1MB8|LINE|L1 -62565 NR_160710 440416 Hs.661076 NR_104185 ENSG00000233098 CCDC144NL-AS1 - CCDC144NL antisense RNA 1 ncRNA 358-160 chr17 72323768 72323963 + 2 NA Intergenic Intergenic -18946 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 274-347 chr7 27345183 27345408 + 2 NA Intergenic Intergenic -98066 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 259-153 chr16 35445017 35445225 + 2 NA Intergenic L1M1|LINE|L1 35475 NR_026980 146481 Hs.316564 NR_026980 FRG2DP - FSHD region gene 2 family member D, pseudogene pseudo 382-103 chr14 27318488 27318866 + 2 NA Intergenic L2c|LINE|L2 -293911 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 325-520 chr7 141354419 141354623 + 2 NA intron (NM_001195278, intron 2 of 3) intron (NM_001195278, intron 2 of 3) -196889 NM_018238 55750 Hs.685880 NM_018238 ENSG00000006530 AGK CATC5|CTRCT38|MTDPS10|MULK acylglycerol kinase protein-coding 578-70 chr17 43378154 43378707 + 2 NA intron (NR_027413, intron 3 of 3) AluSp|SINE|Alu 10468 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 216-249 chr4 64235531 64235715 + 2 NA Intergenic L1M5|LINE|L1 173827 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 319-280 chr2 209089508 209089802 + 2 NA Intergenic L2c|LINE|L2 -334392 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 597-72 chr2 102200304 102200666 + 2 NA intron (NM_003854, intron 4 of 11) L2c|LINE|L2 13171 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 293-290 chr4 30492236 30492438 + 2 NA Intergenic L1M4b|LINE|L1 -228032 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 472-103 chr15 67695308 67695622 + 2 NA intron (NM_001206804, intron 15 of 21) intron (NM_001206804, intron 15 of 21) -130044 NM_001365915 390598 Hs.451224 NM_001031807 ENSG00000188779 SKOR1 CORL1|FUSSEL15|LBXCOR1 SKI family transcriptional corepressor 1 protein-coding 785-49 chr6 22777719 22778339 + 2 NA Intergenic HERVL40-int|LTR|ERVL -60105 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 415-139 chr2 139591714 139591984 + 2 NA Intergenic Intergenic 694525 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 282-422 chr7 41359702 41359909 + 2 NA Intergenic Intergenic 258201 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 310-387 chr4 187696044 187696337 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -23549 NR_110436 100506272 Hs.508163 NR_110436 ENSG00000250590 LINC02492 - long intergenic non-protein coding RNA 2492 ncRNA 187-104 chr3 35932437 35932618 + 2 NA Intergenic Intergenic 188051 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 522-98 chr16 63142249 63142683 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -1106028 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 350-360 chr4 100122575 100122766 + 2 NA Intergenic Intergenic -67363 NR_125924 101929353 Hs.147584 NR_125924 ENSG00000249710 LOC101929353 - uncharacterized LOC101929353 ncRNA 302-31 chr1 237330959 237331200 + 2 NA intron (NM_001035, intron 3 of 104) intron (NM_001035, intron 3 of 104) -140040 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 607-155 chr9 29456506 29457009 + 2 NA Intergenic MIRb|SINE|MIR -243156 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 272-34 chr10 4614971 4615107 + 2 NA Intergenic L1MB7|LINE|L1 -41117 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 145-17 chr11 115872639 115872752 + 2 NA Intergenic Intergenic -112495 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 333-346 chr3 51830048 51830327 + 2 NA intron (NM_001207023, intron 6 of 6) intron (NM_001207023, intron 6 of 6) 3304 NM_001085479 401067 Hs.729443 NM_001085479 ENSG00000229972 IQCF3 - IQ motif containing F3 protein-coding 331-19 chr1 113275764 113275941 + 2 NA Intergenic Intergenic -69599 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 209-86 chr14 31981097 31981249 + 2 NA Intergenic L1PA16|LINE|L1 36320 NR_146544 105370439 NR_146544 ENSG00000258474 LINC02313 - long intergenic non-protein coding RNA 2313 ncRNA 492-122 chr2 15385282 15385720 + 2 NA intron (NR_052013, intron 28 of 50) intron (NR_052013, intron 28 of 50) 175833 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 384-102 chr14 22422181 22422536 + 2 NA intron (NR_148364, intron 1 of 1) intron (NR_148364, intron 1 of 1) 10395 NR_148364 105370401 Hs.435144 NR_148361 LOC105370401 - uncharacterized LOC105370401 ncRNA 335-22 chr1 114269249 114269562 + 2 NA Intergenic Intergenic -115536 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 344-285 chr21 22483205 22483394 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 384682 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 286-323 chr4 132420002 132420238 + 2 NA Intergenic L1ME1|LINE|L1 -170969 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 244-305 chr5 107040919 107041103 + 2 NA Intergenic Intergenic -29997 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 337-434 chr5 24690929 24691220 + 2 NA Intergenic Intergenic -46096 NM_001317222 1008 Hs.92489 NM_006727 ENSG00000040731 CDH10 - cadherin 10 protein-coding 560-41 chr13 72029949 72030442 + 2 NA Intergenic L1M1|LINE|L1 -162991 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 350-77 chr11 78656855 78657031 + 2 NA 3' UTR (NM_001098816, exon 34 of 34) 3' UTR (NM_001098816, exon 34 of 34) -82079 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 518-139 chr2 111061970 111062462 + 2 NA intron (NM_001371254, intron 17 of 18) L1MD1|LINE|L1 53372 NR_122074 400997 Hs.652337 NR_122074 ENSG00000204581 ACOXL-AS1 - ACOXL antisense RNA 1 ncRNA 596-64 chr14 88913643 88913975 + 2 NA Intergenic L2a|LINE|L2 89158 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 590-171 chr8 124153872 124154255 + 2 NA intron (NR_103547, intron 1 of 4) AluJr|SINE|Alu 17459 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 373-77 chr11 34565702 34566022 + 2 NA Intergenic Intergenic -52068 NM_001422 2001 Hs.11713 NM_001422 ENSG00000135374 ELF5 ESE2 E74 like ETS transcription factor 5 protein-coding 262-80 chr11 60082414 60082607 + 2 NA Intergenic L1MB1|LINE|L1 -6154 NM_000139 2206 Hs.386748 NM_000139 ENSG00000149534 MS4A2 APY|ATOPY|FCER1B|FCERI|IGEL|IGER|IGHER|MS4A1 membrane spanning 4-domains A2 protein-coding 271-40 chr10 18857625 18857824 + 2 NA Intergenic Intergenic -191077 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 654-117 chr7 68119450 68119953 + 2 NA Intergenic Intergenic 99448 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 318-503 chr7 37010370 37010639 + 2 NA intron (NR_104120, intron 2 of 2) MLT1D|LTR|ERVL-MaLR 12708 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 489-59 chr12 90887943 90888309 + 2 NA Intergenic L2b|LINE|L2 -29897 NR_038868 439916 Hs.350600 NM_001039384 ENSG00000196243 LINC00615 C12orf37 long intergenic non-protein coding RNA 615 ncRNA 296-326 chr4 28397008 28397239 + 2 NA Intergenic L1MEf|LINE|L1 -422459 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 198-73 chr15 62264241 62264400 + 2 NA Intergenic Intergenic -15525 NR_136885 255180 Hs.370479 NM_173805 GOLGA2P11 - GOLGA2 pseudogene 11 pseudo 391-124 chr16 9590574 9590771 + 2 NA Intergenic Intergenic -135167 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 214-64 chr11 82781185 82781345 + 2 NA Intergenic L2|LINE|L2 -47401 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 357-371 chr5 173367014 173367216 + 2 NA Intergenic L1PA15|LINE|L1 19660 NR_107023 102465862 NR_107023 ENSG00000274994 MIR8056 hsa-mir-8056 microRNA 8056 ncRNA 553-96 chr19 30834312 30834754 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -332977 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 276-484 chr9 111888321 111888572 + 2 NA Intergenic Intergenic -8368 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 736-81 chr7 84791334 84791885 + 2 NA Intergenic (TATA)n|Simple_repeat|Simple_repeat 259133 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 485-56 chr12 87392162 87392548 + 2 NA Intergenic Intergenic 61616 NR_135020 105369879 Hs.552351 NR_135020 LOC105369879 - uncharacterized LOC105369879 ncRNA 232-208 chr2 224277338 224277544 + 2 NA Intergenic Intergenic 124553 NM_024785 79843 Hs.147585 NM_024785 ENSG00000124019 FAM124B - family with sequence similarity 124 member B protein-coding 428-107 chr19 9258279 9258550 + 2 NA Intergenic SATR1|Satellite|Satellite 7370 NM_001079935 26648 Hs.129832 NM_001079935 ENSG00000237521 OR7E24 HSHT2|OR19-8|OR7E24P|OR7E24Q olfactory receptor family 7 subfamily E member 24 protein-coding 323-203 chr18 57812152 57812453 + 2 NA Intergenic HAL1|LINE|L1 -8987 NM_005603 5205 Hs.216623 NM_005603 ENSG00000081923 ATP8B1 ATPIC|BRIC|FIC1|ICP1|PFIC|PFIC1 ATPase phospholipid transporting 8B1 protein-coding 401-209 chr3 86674040 86674388 + 2 NA Intergenic Intergenic 192271 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 227-248 chr4 41153783 41154002 + 2 NA intron (NM_173075, intron 1 of 16) Charlie29a|DNA|hAT-Charlie 60650 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 319-58 chr10 55383060 55383246 + 2 NA intron (NM_001354404, intron 2 of 34) LTR1F2|LTR|ERV1 -215889 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 288-32 chr1 215725761 215725984 + 2 NA intron (NM_206933, intron 61 of 71) intron (NM_206933, intron 61 of 71) 158568 NM_001319295 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 304-334 chr3 60511616 60511811 + 2 NA intron (NM_001320900, intron 6 of 9) L1MC4|LINE|L1 106157 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 419-194 chr3 136900022 136900346 + 2 NA intron (NM_001291999, intron 1 of 3) L1MA4A|LINE|L1 -30318 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 416-51 chr10 88656562 88656936 + 2 NA Intergenic Intergenic -7693 NM_001198830 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 425-57 chr11 81615310 81615590 + 2 NA Intergenic L1MA5|LINE|L1 275386 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 741-27 chr2 11965205 11965800 + 2 NA Intergenic L1MD|LINE|L1 -41614 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 536-146 chr20 38689227 38689586 + 2 NA Intergenic MIRb|SINE|MIR -35080 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 453-302 chr9 79410084 79410505 + 2 NA Intergenic Intergenic -161479 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 312-511 chr8 59684047 59684287 + 2 NA Intergenic L1P4|LINE|L1 564957 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 267-186 chr2 59393147 59393335 + 2 NA Intergenic Intergenic 175533 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 316-354 chr3 90002421 90002643 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 894911 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 304-383 chr4 90247587 90247809 + 2 NA intron (NM_207491, intron 1 of 7) intron (NM_207491, intron 1 of 7) 12667 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 261-30 chr10 24050636 24050793 + 2 NA intron (NM_001098500, intron 2 of 18) L1PA7|LINE|L1 -158077 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 309-387 chr4 58301834 58302020 + 2 NA Intergenic LTR65|LTR|ERV1 234401 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 266-134 chr15 96980517 96980658 + 2 NA Intergenic L1ME3F|LINE|L1 197152 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 379-5 chr1 41451278 41451553 + 2 NA Intergenic MIR3|SINE|MIR 33268 NM_001956 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 217-233 chr3 106967620 106967800 + 2 NA Intergenic L1ME3A|LINE|L1 272928 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 525-219 chr6 46167614 46167980 + 2 NA exon (NM_001290072, exon 3 of 5) exon (NM_001290072, exon 3 of 5) 3183 NM_001290072 59084 Hs.35198 NM_021572 ENSG00000112796 ENPP5 NPP-5|NPP5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 protein-coding 355-115 chr11 127837217 127837416 + 2 NA Intergenic X7A_LINE|LINE|CR1 -371450 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 235-368 chr8 119544536 119544697 + 2 NA Intergenic L2c|LINE|L2 48392 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 299-385 chr5 146723313 146723485 + 2 NA intron (NM_001271899, intron 2 of 9) L1ME3|LINE|L1 155386 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 326-514 chr8 27092099 27092342 + 2 NA Intergenic Intergenic -43257 NR_031680 100313884 NR_031680 ENSG00000221616 MIR548H4 MIR548H-4|MIRN548H4|hsa-mir-548h-4 microRNA 548h-4 ncRNA 322-160 chr14 83242559 83242763 + 2 NA Intergenic LTR80A|LTR|ERVL 600029 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 237-143 chr17 73145156 73145386 + 2 NA Intergenic Intergenic -19739 NM_001050 6752 Hs.514451 NM_001050 ENSG00000180616 SSTR2 - somatostatin receptor 2 protein-coding 255-268 chr3 101201881 101202052 + 2 NA Intergenic Intergenic 118609 NM_016247 50939 Hs.209249 NM_016247 ENSG00000081148 IMPG2 IPM200|RP56|SPACRCAN|VMD5 interphotoreceptor matrix proteoglycan 2 protein-coding 264-293 chr4 79121281 79121459 + 2 NA intron (NR_038342, intron 3 of 5) L1M4b|LINE|L1 149622 NR_038342 100505875 Hs.480055 NR_038342 LINC01088 - long intergenic non-protein coding RNA 1088 ncRNA 349-459 chr6 129254411 129254657 + 2 NA intron (NM_000426, intron 14 of 64) intron (NM_000426, intron 14 of 64) 371393 NM_000426 3908 Hs.200841 NM_000426 ENSG00000196569 LAMA2 LAMM|MDC1A laminin subunit alpha 2 protein-coding 236-82 chr12 21302246 21302417 + 2 NA intron (NM_021094, intron 5 of 13) L2|LINE|L2 32586 NM_021094 6579 Hs.46440 NM_005075 ENSG00000084453 SLCO1A2 OATP|OATP-A|OATP1A2|SLC21A3 solute carrier organic anion transporter family member 1A2 protein-coding 143-13 chr11 59171199 59171296 + 2 NA promoter-TSS (NM_001300727) promoter-TSS (NM_001300727) -183 NM_001300727 23220 Hs.523696 NM_015177 ENSG00000110042 DTX4 RNF155 deltex E3 ubiquitin ligase 4 protein-coding 524-226 chr7 4899593 4899947 + 2 NA intron (NR_072989, intron 8 of 8) intron (NR_072989, intron 8 of 8) -16054 NM_018059 55698 Hs.667336 NM_018059 ENSG00000157927 RADIL RASIP2 Rap associating with DIL domain protein-coding 319-504 chr7 55923518 55923792 + 2 NA exon (NM_001366796, exon 6 of 7) exon (NM_001366796, exon 6 of 7) -28222 NM_015969 51373 Hs.44298 NM_015969 ENSG00000239789 MRPS17 HSPC011|MRP-S17|RPMS17|S17mt mitochondrial ribosomal protein S17 protein-coding 135-56 chr5 97429669 97429788 + 2 NA Intergenic Intergenic -74968 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 277-271 chr3 123303275 123303465 + 2 NA intron (NM_183357, intron 13 of 20) intron (NM_183357, intron 13 of 20) 101427 NM_012430 26984 Hs.477361 NM_012430 ENSG00000121542 SEC22A SEC22L2 SEC22 homolog A, vesicle trafficking protein protein-coding 618-117 chr7 21613746 21614108 + 2 NA intron (NM_001277115, intron 20 of 81) AluJo|SINE|Alu 70888 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 253-34 chr1 233196405 233196580 + 2 NA intron (NM_014801, intron 15 of 33) L1ME1|LINE|L1 99233 NM_014801 80003 Hs.370605 NM_014801 ENSG00000135749 PCNX2 PCNXL2 pecanex 2 protein-coding 356-487 chr8 121835288 121835574 + 2 NA Intergenic LTR82A|LTR|ERVL -193991 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 331-279 chr2 116509714 116509894 + 2 NA Intergenic L1PA16|LINE|L1 1165989 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 366-408 chr7 40734985 40735234 + 2 NA intron (NM_024728, intron 13 of 14) intron (NM_024728, intron 13 of 14) 244830 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 334-594 chrX 154946013 154946256 + 2 NA intron (NM_000132, intron 13 of 25) L1M2|LINE|L1 -58676 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 382-187 chr2 51625506 51625731 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 593017 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 290-43 chr10 23688140 23688418 + 2 NA Intergenic Intergenic -6448 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 372-345 chr3 189527340 189527669 + 2 NA Intergenic Intergenic -69242 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 463-149 chr2 141613476 141613775 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 518076 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 309-519 chr7 91731308 91731521 + 2 NA Intergenic MIRc|SINE|MIR 149288 NM_006980 7978 Hs.532216 NM_006980 ENSG00000127989 MTERF1 MTERF mitochondrial transcription termination factor 1 protein-coding 187-185 chr9 20496221 20496335 + 2 NA intron (NM_001286691, intron 2 of 10) intron (NM_001286691, intron 2 of 10) 6064 NR_039685 100616441 NR_039685 ENSG00000264941 MIR4474 - microRNA 4474 ncRNA 356-439 chr6 159535034 159535232 + 2 NA Intergenic Intergenic 151602 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 416-199 chr20 7605530 7605747 + 2 NA Intergenic L1MA2|LINE|L1 234030 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 263-179 chr19 36559026 36559254 + 2 NA intron (NM_001145650, intron 2 of 4) L1M3|LINE|L1 -13930 NR_110703 101927599 Hs.515376 NR_110703 ENSG00000233527 ZNF529-AS1 - ZNF529 antisense RNA 1 ncRNA 382-284 chr4 11872789 11873137 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 89785 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 319-368 chr4 55151002 55151305 + 2 NA Intergenic L1M1|LINE|L1 -25558 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 327-436 chr6 61956254 61956547 + 2 NA intron (NR_146874, intron 4 of 13) intron (NR_146874, intron 4 of 13) 329825 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 525-112 chr2 28149961 28150304 + 2 NA non-coding (NR_120504, exon 3 of 3) non-coding (NR_120504, exon 3 of 3) 56829 NR_120504 100505736 Hs.659540 NR_120504 LOC100505736 - uncharacterized LOC100505736 ncRNA 556-206 chr7 57141719 57142105 + 2 NA Intergenic Intergenic -2048 NM_033273 90827 Hs.616660 NM_033273 ENSG00000185177 ZNF479 HKr19|KR19 zinc finger protein 479 protein-coding 552-71 chr15 36323289 36323643 + 2 NA Intergenic Intergenic -256160 NM_001130010 84529 Hs.48348 NM_032499 ENSG00000186073 C15orf41 HH114 chromosome 15 open reading frame 41 protein-coding 255-162 chr17 62982945 62983142 + 2 NA intron (NM_025185, intron 1 of 25) L1M2c|LINE|L1 16808 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 208-175 chr3 154362812 154362979 + 2 NA intron (NM_001038705, intron 3 of 3) intron (NM_001038705, intron 3 of 3) -38398 NM_001114397 170506 Hs.446270 NM_020865 ENSG00000174953 DHX36 DDX36|G4R1|MLEL1|RHAU DEAH-box helicase 36 protein-coding 321-491 chr6 54167655 54167850 + 2 NA intron (NM_001281746, intron 8 of 11) L1MEg|LINE|L1 56309 NM_001281747 90523 Hs.449276 NM_138569 ENSG00000146147 MLIP C6orf142|CIP muscular LMNA interacting protein protein-coding 223-268 chr5 23375562 23375705 + 2 NA Intergenic Intergenic -131976 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 440-132 chr2 164443037 164443424 + 2 NA Intergenic L2|LINE|L2 125265 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 311-170 chr16 9416512 9416754 + 2 NA Intergenic L2c|LINE|L2 28352 NR_126397 104355218 Hs.564967 NR_126397 ENSG00000261397 LINC01177 - long intergenic non-protein coding RNA 1177 ncRNA 484-152 chr20 11180982 11181258 + 2 NA Intergenic Intergenic 92263 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 527-70 chr13 61977814 61978163 + 2 NA Intergenic Intergenic 51560 NR_046995 100874143 Hs.552684 NR_046995 ENSG00000229578 LINC00358 - long intergenic non-protein coding RNA 358 ncRNA 358-165 chr18 5771500 5771697 + 2 NA intron (NR_038839, intron 3 of 4) intron (NR_038839, intron 3 of 4) 22779 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 394-308 chr7 79910776 79911011 + 2 NA Intergenic Intergenic -223938 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 263-312 chr5 14222280 14222477 + 2 NA intron (NM_007118, intron 1 of 56) Charlie9|DNA|hAT-Charlie 79036 NR_134469 7204 Hs.130031 NM_007118 ENSG00000038382 TRIO ARHGEF23|MEBAS|MRD44|tgat trio Rho guanine nucleotide exchange factor protein-coding 292-17 chr1 94698243 94698498 + 2 NA intron (NR_160779, intron 2 of 5) intron (NR_160779, intron 2 of 5) 47530 NR_039620 100616321 NR_039620 ENSG00000263526 MIR378G - microRNA 378g ncRNA 383-114 chr14 69934978 69935279 + 2 NA intron (NM_001034852, intron 1 of 11) intron (NM_001034852, intron 1 of 11) -43005 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 325-115 chr11 130815126 130815358 + 2 NA Intergenic Intergenic 46868 NR_125383 100507431 Hs.375101 NR_125383 LINC02551 - long intergenic non-protein coding RNA 2551 ncRNA 415-177 chr3 71739185 71739528 + 2 NA intron (NM_173359, intron 1 of 7) L1MEc|LINE|L1 -10238 NM_001134650 317649 Hs.581355 NM_173359 ENSG00000163412 EIF4E3 eIF-4E3|eIF4E-3 eukaryotic translation initiation factor 4E family member 3 protein-coding 304-246 chr2 38899575 38899809 + 2 NA Intergenic L1MA7|LINE|L1 -19671 NM_001145451 100271715 Hs.99841 NM_001145451 ENSG00000214694 ARHGEF33 - Rho guanine nucleotide exchange factor 33 protein-coding 220-376 chr8 120961106 120961283 + 2 NA Intergenic Intergenic -149148 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 478-174 chr22 39749271 39749671 + 2 NA intron (NM_152512, intron 6 of 6) intron (NM_152512, intron 6 of 6) 144289 NM_152512 150350 Hs.474869 NM_152512 ENSG00000176177 ENTHD1 CACNA1I|dJ370M22.3 ENTH domain containing 1 protein-coding 141-22 chr14 45686237 45686347 + 2 NA Intergenic L1MA4|LINE|L1 29310 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 433-293 chr8 141904742 141905156 + 2 NA Intergenic Intergenic -118636 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 280-264 chr3 119181623 119181853 + 2 NA intron (NM_006952, intron 1 of 7) L2c|LINE|L2 8140 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 353-142 chr14 60362788 60363015 + 2 NA Intergenic Intergenic 39705 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 270-431 chr9 95432452 95432715 + 2 NA Intergenic Intergenic -31026 NR_038982 100507346 Hs.661847 NR_038982 LOC100507346 - uncharacterized LOC100507346 ncRNA 366-39 chr10 13910276 13910551 + 2 NA intron (NM_018027, intron 2 of 24) MLT1H|LTR|ERVL-MaLR 61483 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 504-218 chr5 124152975 124153311 + 2 NA intron (NR_125774, intron 4 of 5) L1MD1|LINE|L1 285377 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 527-123 chr2 37577588 37577988 + 2 NA Intergenic Intergenic 94411 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 246-394 chr8 69157381 69157556 + 2 NA Intergenic Intergenic -53278 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 220-118 chr15 58436562 58436726 + 2 NA non-coding (NR_120338, exon 3 of 3) non-coding (NR_120338, exon 3 of 3) 4653 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 366-385 chr6 139916126 139916346 + 2 NA Intergenic Intergenic -60083 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 355-204 chr18 344110 344416 + 2 NA intron (NM_130386, intron 5 of 9) intron (NM_130386, intron 5 of 9) -76216 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 468-276 chr6 37806833 37807241 + 2 NA Intergenic L1ME3A|LINE|L1 -12690 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 276-431 chr7 79415782 79416012 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -37060 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 335-57 chr10 60563320 60563524 + 2 NA intron (NM_001204403, intron 2 of 43) MER46C|DNA|TcMar-Tigger 9534 NM_001204404 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 385-410 chr9 85328242 85328542 + 2 NA Intergenic L1PB1|LINE|L1 413637 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 222-197 chr2 182935204 182935424 + 2 NA exon (NM_205842, exon 26 of 32) exon (NM_205842, exon 26 of 32) -68677 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 374-177 chr2 40136535 40136869 + 2 NA intron (NM_001351483, intron 8 of 8) intron (NM_001351483, intron 8 of 8) 219068 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 432-48 chr11 84939965 84940328 + 2 NA intron (NM_001351274, intron 5 of 26) L1MA3|LINE|L1 -16725 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 206-225 chr5 163557618 163557778 + 2 NA Intergenic Intergenic 52079 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 360-439 chr7 94885890 94886162 + 2 NA Intergenic MER50|LTR|ERV1 -21568 NM_001166160 55607 Hs.21816 NM_017650 ENSG00000158528 PPP1R9A NRB1|NRBI|Neurabin-I protein phosphatase 1 regulatory subunit 9A protein-coding 592-121 chr3 180378121 180378680 + 2 NA Intergenic Intergenic -35773 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 209-191 chr3 21717012 21717192 + 2 NA intron (NM_024697, intron 1 of 7) AluSc|SINE|Alu 34108 NM_024697 79750 Hs.21026 NM_024697 ENSG00000151789 ZNF385D ZNF659 zinc finger protein 385D protein-coding 705-81 chr5 92655520 92656040 + 2 NA Intergenic Intergenic 915563 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 503-160 chr2 148562386 148562837 + 2 NA Intergenic L1PA5|LINE|L1 -82140 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 386-167 chr2 54197160 54197433 + 2 NA intron (NM_138448, intron 3 of 3) LTR16E2|LTR|ERVL 58933 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 127-20 chr11 100171686 100171758 + 2 NA intron (NM_001243270, intron 12 of 23) intron (NM_001243270, intron 12 of 23) -515566 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 289-278 chr21 29840247 29840457 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 92177 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 447-61 chr12 91699736 91700088 + 2 NA Intergenic HERV16-int|LTR|ERVL 441801 NR_046159 256021 Hs.651357 NM_001256373 ENSG00000257242 LINC01619 C12orf79 long intergenic non-protein coding RNA 1619 ncRNA 409-281 chr7 40265244 40265551 + 2 NA intron (NM_001193312, intron 7 of 12) intron (NM_001193312, intron 7 of 12) 130421 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 479-83 chr17 65589277 65589625 + 2 NA Intergenic MIRb|SINE|MIR -27803 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 203-66 chr14 82561880 82562029 + 2 NA Intergenic Intergenic -80678 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 334-522 chr8 50427508 50427727 + 2 NA intron (NR_135795, intron 4 of 18) AluJr|SINE|Alu 263486 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 363-352 chr5 24758354 24758638 + 2 NA Intergenic L1PB4|LINE|L1 82087 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 389-123 chr16 73264275 73264530 + 2 NA Intergenic Intergenic -119955 NM_207385 388289 Hs.371893 NM_207385 C16orf47 - chromosome 16 open reading frame 47 protein-coding 758-3 chr1 176301725 176302227 + 2 NA Intergenic L1ME4b|LINE|L1 -94690 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 203-177 chr5 28467434 28467628 + 2 NA Intergenic Intergenic -179866 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 294-291 chr3 43873439 43873714 + 2 NA Intergenic L1ME4a|LINE|L1 -181982 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 174-48 chr15 97048316 97048465 + 2 NA Intergenic Intergenic 264955 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 410-315 chr8 123115220 123115434 + 2 NA intron (NM_001363156, intron 9 of 19) intron (NM_001363156, intron 9 of 19) 42078 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 462-138 chr2 98217530 98217909 + 2 NA intron (NR_144296, intron 13 of 28) intron (NR_144296, intron 13 of 28) 68186 NM_001345864 200403 Hs.269977 NM_144992 ENSG00000168658 VWA3B SCAR22 von Willebrand factor A domain containing 3B protein-coding 534-264 chr8 121543193 121543584 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -95958 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 505-217 chr4 55153015 55153288 + 2 NA Intergenic L1MA3|LINE|L1 -27556 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 305-27 chr1 113520863 113521024 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 130428 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 168-64 chr2 167538880 167538988 + 2 NA Intergenic Intergenic -279738 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 441-100 chr18 21068729 21069143 + 2 NA intron (NM_005406, intron 2 of 32) L1M4|LINE|L1 42877 NM_005406 6093 Hs.306307 NM_005406 ENSG00000067900 ROCK1 P160ROCK|ROCK-I Rho associated coiled-coil containing protein kinase 1 protein-coding 277-253 chr3 56085389 56085576 + 2 NA intron (NR_132749, intron 6 of 17) intron (NR_132749, intron 6 of 17) -232888 NR_037502 100500875 NR_037502 ENSG00000264013 MIR3938 - microRNA 3938 ncRNA 705-99 chr8 68324711 68325263 + 2 NA intron (NR_038877, intron 1 of 2) intron (NR_038877, intron 1 of 2) -5386 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 298-180 chr18 62685117 62685287 + 2 NA Intergenic MER4D|LTR|ERV1 -30339 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 233-206 chr20 40751294 40751435 + 2 NA Intergenic Intergenic -36741 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 253-261 chr3 80978213 80978413 + 2 NA Intergenic Intergenic -15555 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 273-85 chr11 105424687 105424944 + 2 NA Intergenic Intergenic -185258 NM_000829 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 239-218 chr21 18421582 18421761 + 2 NA Intergenic Intergenic -17886 NM_002772 5651 Hs.149473 NM_002772 ENSG00000154646 TMPRSS15 ENTK|PRSS7 transmembrane serine protease 15 protein-coding 260-320 chr4 111816136 111816356 + 2 NA Intergenic Intergenic -329208 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 284-336 chr5 155477513 155477707 + 2 NA Intergenic Intergenic 463855 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 650-66 chr20 18933990 18934635 + 2 NA Intergenic L1PB1|LINE|L1 -104109 NR_161343 100128496 Hs.664484 NR_161342 C20orf78 - chromosome 20 open reading frame 78 ncRNA 350-347 chr4 59020588 59020924 + 2 NA intron (NR_133942, intron 1 of 1) L1ME3G|LINE|L1 7183 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 349-379 chr4 94428053 94428242 + 2 NA Intergenic L1MEc|LINE|L1 -23710 NR_046186 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 610-156 chr7 10081676 10082144 + 2 NA Intergenic Intergenic 447640 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 334-538 chr8 87192841 87193098 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 326554 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 302-163 chr17 6753629 6753849 + 2 NA Intergenic Intergenic -1708 NM_001353135 54739 Hs.441975 NM_017523 ENSG00000132530 XAF1 BIRC4BP|HSXIAPAF1|XIAPAF1 XIAP associated factor 1 protein-coding 350-85 chr12 10570909 10571105 + 2 NA intron (NR_146456, intron 1 of 2) intron (NR_146456, intron 1 of 2) 17628 NR_146455 101060038 NR_146455 LINC02446 - long intergenic non-protein coding RNA 2446 ncRNA 171-84 chr3 148403821 148403912 + 2 NA Intergenic MIRb|SINE|MIR 122975 NR_146712 105374149 Hs.274837 NR_146712 LINC02046 - long intergenic non-protein coding RNA 2046 ncRNA 497-130 chr2 104093199 104093535 + 2 NA Intergenic Intergenic 314965 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 261-186 chr2 70429206 70429421 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie 52327 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 267-265 chr3 120629136 120629378 + 2 NA intron (NM_000187, intron 13 of 13) intron (NM_000187, intron 13 of 13) 32921 NM_004547 4710 Hs.304613 NM_004547 ENSG00000065518 NDUFB4 B15|CI-B15 NADH:ubiquinone oxidoreductase subunit B4 protein-coding 351-137 chr14 82465256 82465599 + 2 NA Intergenic L1PA11|LINE|L1 -177205 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 234-8 chr1 74824480 74824658 + 2 NA Intergenic MIR3|SINE|MIR -91161 NM_001130042 1429 Hs.83114 NM_001889 ENSG00000116791 CRYZ - crystallin zeta protein-coding 314-553 chr8 36528591 36528903 + 2 NA Intergenic L2c|LINE|L2 -255627 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 322-511 chr8 18338938 18339127 + 2 NA Intergenic L1MB1|LINE|L1 -52250 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 595-32 chr11 87549754 87550286 + 2 NA Intergenic Intergenic 169391 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 680-124 chr9 119695022 119695576 + 2 NA Intergenic Intergenic -239761 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 306-312 chr3 73982586 73982868 + 2 NA Intergenic Intergenic 173483 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 653-125 chr8 126945055 126945678 + 2 NA Intergenic Intergenic -67788 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 384-325 chr6 140402536 140402761 + 2 NA Intergenic Intergenic 197396 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 342-392 chr5 38993553 38993843 + 2 NA intron (NM_001285439, intron 6 of 38) intron (NM_001285439, intron 6 of 38) 80701 NM_001285439 253260 Hs.407926 NM_152756 ENSG00000164327 RICTOR AVO3|PIA|hAVO3 RPTOR independent companion of MTOR complex 2 protein-coding 467-44 chr11 36219980 36220285 + 2 NA intron (NM_001304264, intron 4 of 5) L1ME1|LINE|L1 69292 NM_001307937 29099 Hs.99443 NM_014186 ENSG00000110442 COMMD9 C11orf55|HSPC166|LINC00610 COMM domain containing 9 protein-coding 332-390 chr4 156838077 156838385 + 2 NA intron (NM_016205, intron 2 of 5) intron (NM_016205, intron 2 of 5) 133568 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 829-5 chr10 43503233 43503826 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 64930 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 395-84 chr13 84002818 84003153 + 2 NA Intergenic AluSx|SINE|Alu -120511 NM_001281503 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 358-296 chr3 87670153 87670473 + 2 NA Intergenic Intergenic -122393 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 295-375 chr5 29868743 29869021 + 2 NA Intergenic (GATA)n|Simple_repeat|Simple_repeat -11678 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 357-404 chr6 170120662 170120861 + 2 NA Intergenic L1MEf|LINE|L1 -39881 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 527-3 chr1 56350251 56350735 + 2 NA Intergenic L1ME1|LINE|L1 -64470 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 364-322 chr4 169522994 169523185 + 2 NA intron (NM_001199397, intron 19 of 35) L1MD1|LINE|L1 89494 NM_012224 4750 Hs.481181 NM_012224 ENSG00000137601 NEK1 ALS24|NY-REN-55|SRPS2|SRPS2A|SRTD6 NIMA related kinase 1 protein-coding 174-124 chr6 46313785 46313916 + 2 NA intron (NR_125838, intron 2 of 3) intron (NR_125838, intron 2 of 3) 12042 NM_005822 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 482-131 chr2 137564038 137564425 + 2 NA intron (NM_001316349, intron 16 of 27) intron (NM_001316349, intron 16 of 27) 363701 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 408-231 chr4 48212131 48212339 + 2 NA intron (NM_003215, intron 2 of 17) intron (NM_003215, intron 2 of 17) 57603 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 372-445 chr6 156938848 156939095 + 2 NA intron (NM_020732, intron 5 of 19) Mam_R4|LINE|Dong-R4 -97456 NM_001363725 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 760-15 chr13 31497415 31498035 + 2 NA Intergenic L1MDa|LINE|L1 -241801 NM_130806 122042 Hs.680763 NM_130806 ENSG00000133105 RXFP2 GPR106|GREAT|INSL3R|LGR8|LGR8.1|RXFPR2 relaxin family peptide receptor 2 protein-coding 322-237 chr2 39918710 39918945 + 2 NA intron (NR_038441, intron 1 of 4) L1MA4A|LINE|L1 1193 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 310-287 chr20 9099343 9099528 + 2 NA intron (NM_001172646, intron 1 of 37) MER3|DNA|hAT-Charlie 30381 NM_001172646 5332 Hs.472101 NM_000933 ENSG00000101333 PLCB4 ARCND2|PI-PLC phospholipase C beta 4 protein-coding 365-150 chr17 33171502 33171845 + 2 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 121315 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 271-414 chr7 96826088 96826336 + 2 NA Intergenic AluJb|SINE|Alu -116321 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 395-189 chr2 206682280 206682528 + 2 NA intron (NM_001093730, intron 9 of 11) L2-3_Crp|LINE|L2 35992 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 383-311 chr5 42150229 42150582 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 24940 NR_104636 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 689-19 chr12 103567158 103567716 + 2 NA Intergenic L1PA17|LINE|L1 19643 NR_110103 101929084 Hs.440981 NR_110103 ENSG00000257762 LINC02401 - long intergenic non-protein coding RNA 2401 ncRNA 350-415 chr5 133013737 133014028 + 2 NA intron (NR_131766, intron 1 of 4) L1M5|LINE|L1 12667 NM_001308127 54819 Hs.29700 NM_017665 ENSG00000155329 ZCCHC10 - zinc finger CCHC-type containing 10 protein-coding 403-301 chr8 42940892 42941259 + 2 NA intron (NM_032410, intron 4 of 21) AluSx1|SINE|Alu 44097 NM_032410 84376 Hs.162852 NM_032410 ENSG00000168172 HOOK3 HK3 hook microtubule tethering protein 3 protein-coding 175-182 chrX 47822562 47822694 + 2 NA Intergenic L1ME2z|LINE|L1 -14274 NM_007137 347344 Hs.114246 NM_007137 ENSG00000197779 ZNF81 HFZ20|MRX45|dJ54B20.6 zinc finger protein 81 protein-coding 190-101 chr20 4294822 4294958 + 2 NA Intergenic L1M5|LINE|L1 -45603 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 348-447 chr6 50190860 50191044 + 2 NA Intergenic Intergenic -141023 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 234-384 chr8 61402587 61402744 + 2 NA intron (NM_173519, intron 3 of 5) L2b|LINE|L2 114695 NM_173519 157807 Hs.591874 NM_173519 ENSG00000177182 CLVS1 C6orf212L|CRALBPL|RLBP1L1 clavesin 1 protein-coding 268-73 chr11 117742112 117742310 + 2 NA intron (NM_020693, intron 3 of 32) MIR3|SINE|MIR 55005 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 380-20 chr1 157024378 157024704 + 2 NA intron (NM_014784, intron 1 of 39) intron (NM_014784, intron 1 of 39) 21201 NM_198236 9826 Hs.516954 NM_014784 ENSG00000132694 ARHGEF11 GTRAP48|PDZ-RHOGEF Rho guanine nucleotide exchange factor 11 protein-coding 510-249 chr6 122306072 122306381 + 2 NA Intergenic L1MEf|LINE|L1 -93325 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 477-19 chr1 166992467 166992904 + 2 NA intron (NM_032858, intron 3 of 11) intron (NM_032858, intron 3 of 11) 3405 NM_032858 84944 Hs.651245 NM_032858 ENSG00000143194 MAEL CT128|SPATA35 maelstrom spermatogenic transposon silencer protein-coding 593-138 chr7 81627120 81627616 + 2 NA intron (NR_126025, intron 1 of 10) intron (NR_126025, intron 1 of 10) -1152 NR_126026 100128317 Hs.571267 NR_126025 ENSG00000233491 LOC100128317 - uncharacterized LOC100128317 ncRNA 294-204 chr2 41479261 41479462 + 2 NA Intergenic Intergenic -398194 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 640-37 chr14 81854592 81854976 + 2 NA Intergenic MER57-int|LTR|ERV1 -111646 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 480-206 chr4 22720005 22720393 + 2 NA intron (NR_102357, intron 1 of 4) intron (NR_102357, intron 1 of 4) 6110 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 656-128 chr8 105041970 105042542 + 2 NA Intergenic L1ME1|LINE|L1 -276182 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 256-408 chr8 54302724 54302880 + 2 NA Intergenic Intergenic -27884 NR_004385 26766 NR_004385 ENSG00000199212 RNU105C E1-5|E1-6 RNA, U105C small nucleolar snoRNA 657-76 chr5 30293064 30293552 + 2 NA Intergenic Intergenic 412748 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 176-13 chr10 92830802 92830907 + 2 NA promoter-TSS (NM_001319194) promoter-TSS (NM_001319194) -254 NM_001319194 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 309-397 chr4 71741466 71741740 + 2 NA TTS (NM_001204306) TTS (NM_001204306) 42476 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 256-295 chr4 107787514 107787718 + 2 NA Intergenic L2a|LINE|L2 -36949 NM_001136258 166929 Hs.595423 NM_152621 ENSG00000164023 SGMS2 SMS2 sphingomyelin synthase 2 protein-coding 389-158 chr2 26677223 26677535 + 2 NA Intergenic MER20|DNA|hAT-Charlie -15343 NM_002246 3777 Hs.24040 NM_002246 ENSG00000171303 KCNK3 K2p3.1|OAT1|PPH4|TASK|TASK-1|TBAK1 potassium two pore domain channel subfamily K member 3 protein-coding 548-105 chr2 8977532 8977973 + 2 NA intron (NR_135603, intron 1 of 13) L2a|LINE|L2 25932 NR_135606 129642 Hs.467634 NM_138799 ENSG00000143797 MBOAT2 LPAAT|LPCAT4|LPEAT|LPLAT 2|OACT2 membrane bound O-acyltransferase domain containing 2 protein-coding 300-473 chr8 89012357 89012602 + 2 NA Intergenic Intergenic -684996 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 203-255 chrX 41089275 41089471 + 2 NA intron (NM_001039591, intron 1 of 44) intron (NM_001039591, intron 1 of 44) 3928 NM_001039590 8239 Hs.77578 NM_004652 ENSG00000124486 USP9X DFFRX|FAF|FAM|MRX99|MRXS99F ubiquitin specific peptidase 9 X-linked protein-coding 372-71 chr11 34023916 34024210 + 2 NA Intergenic MamRep1151|LTR?|LTR? -27668 NM_005898 4076 Hs.471818 NM_005898 ENSG00000135387 CAPRIN1 GPIAP1|GPIP137|GRIP137|M11S1|RNG105|p137GPI cell cycle associated protein 1 protein-coding 242-97 chr13 96645606 96645816 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 218482 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 145-28 chr14 60280264 60280369 + 2 NA intron (NM_177951, intron 2 of 3) MIRb|SINE|MIR 31095 NM_021003 5494 Hs.130036 NM_021003 ENSG00000100614 PPM1A PP2C-ALPHA|PP2CA|PP2Calpha protein phosphatase, Mg2+/Mn2+ dependent 1A protein-coding 343-210 chr19 9411717 9412043 + 2 NA TTS (NM_001271314) TTS (NM_001271314) 23693 NM_001370397 10781 Hs.656185 NM_006631 ENSG00000174652 ZNF266 HZF1 zinc finger protein 266 protein-coding 262-319 chr4 79841603 79841858 + 2 NA intron (NR_026555, intron 1 of 1) L1PA3|LINE|L1 14259 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 408-268 chr5 89133763 89134039 + 2 NA intron (NR_136221, intron 4 of 6) L2b|LINE|L2 -229796 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 325-351 chr3 84800592 84800881 + 2 NA intron (NR_033860, intron 8 of 20) L3|LINE|CR1 68839 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 298-331 chr4 79261657 79261901 + 2 NA intron (NR_038342, intron 4 of 5) intron (NR_038342, intron 4 of 5) 64282 NM_032693 84779 Hs.676048 NM_032693 ENSG00000156269 NAA11 ARD1B|ARD2|hARD2 N(alpha)-acetyltransferase 11, NatA catalytic subunit protein-coding 378-244 chr2 129634344 129634688 + 2 NA Intergenic L1MC3|LINE|L1 242975 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 293-475 chr9 92196669 92196885 + 2 NA Intergenic L1M1|LINE|L1 -5621 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 310-48 chr10 77428164 77428369 + 2 NA intron (NM_001271519, intron 1 of 28) MIR3|SINE|MIR 77394 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 290-463 chr8 124719010 124719198 + 2 NA intron (NM_001282971, intron 1 of 14) MIR|SINE|MIR 9369 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 661-90 chr8 51326148 51326589 + 2 NA intron (NM_144651, intron 21 of 22) AluSx1|SINE|Alu 483077 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 395-144 chr18 70811897 70812239 + 2 NA Intergenic Intergenic -161114 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 244-132 chr18 1744634 1744821 + 2 NA Intergenic L1M3de|LINE|L1 -385098 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 314-456 chr5 32520739 32520943 + 2 NA Intergenic L1MB7|LINE|L1 -64716 NM_006713 10923 Hs.229641 NM_006713 ENSG00000113387 SUB1 P15|PC4|p14 SUB1 regulator of transcription protein-coding 239-240 chr3 59768742 59768903 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -110325 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 755-66 chr7 88619664 88620224 + 2 NA Intergenic L1MA8|LINE|L1 -139756 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 268-130 chr15 69977775 69977913 + 2 NA Intergenic MIRc|SINE|MIR 101624 NR_030714 693214 NR_030714 ENSG00000207965 MIR629 MIRN629|hsa-mir-629|mir-629 microRNA 629 ncRNA 157-96 chr4 150462451 150462557 + 2 NA intron (NM_001367550, intron 44 of 56) intron (NM_001367550, intron 44 of 56) -116585 NR_149035 729558 Hs.647978 NR_149035 ENSG00000249690 LOC729558 - uncharacterized LOC729558 ncRNA 382-112 chr14 66353060 66353326 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -133178 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 269-322 chr5 118888313 118888515 + 2 NA intron (NM_001308081, intron 4 of 5) L1ME1|LINE|L1 -86172 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 416-113 chr14 20163819 20164064 + 2 NA Intergenic L1M2|LINE|L1 20205 NM_001004724 390437 Hs.553766 NM_001004724 ENSG00000184394 OR4N5 - olfactory receptor family 4 subfamily N member 5 protein-coding 300-206 chr2 113804958 113805156 + 2 NA Intergenic Intergenic -48415 NR_104470 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 250-104 chr13 58647492 58647681 + 2 NA Intergenic Intergenic -414469 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 285-42 chr10 78718015 78718219 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 349331 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 288-69 chr11 82605211 82605451 + 2 NA Intergenic Intergenic 128533 NM_175885 220382 Hs.448218 NM_175885 ENSG00000182103 FAM181B - family with sequence similarity 181 member B protein-coding 118-26 chr2 74909527 74909630 + 2 NA intron (NR_125792, intron 1 of 4) L1MC5a|LINE|L1 447 NR_125792 102724515 Hs.708649 NR_125792 ENSG00000204792 LINC01291 - long intergenic non-protein coding RNA 1291 ncRNA 354-111 chr12 93555696 93555977 + 2 NA Intergenic L1ME1|LINE|L1 -14133 NM_003877 8835 Hs.485572 NM_003877 ENSG00000120833 SOCS2 CIS2|Cish2|SOCS-2|SSI-2|SSI2|STATI2 suppressor of cytokine signaling 2 protein-coding 347-252 chr2 206507810 206508073 + 2 NA intron (NM_003812, intron 3 of 25) intron (NM_003812, intron 3 of 25) 64409 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 341-75 chr10 130691504 130691747 + 2 NA Intergenic Intergenic 271043 NR_036180 100422867 NR_036180 ENSG00000264803 MIR378C mir-378c microRNA 378c ncRNA 200-251 chr7 21526129 21526276 + 2 NA Intergenic Intergenic -16837 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 382-328 chr5 61604876 61605215 + 2 NA Intergenic Intergenic -32715 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 360-237 chr2 144905700 144905970 + 2 NA intron (NR_033870, intron 3 of 4) MamGypLTR3a|LTR|Gypsy 237868 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 694-31 chr13 38104133 38104667 + 2 NA intron (NR_047500, intron 1 of 5) L1PA15|LINE|L1 38832 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 371-349 chr6 160945193 160945501 + 2 NA Intergenic Intergenic -46380 NM_006724 4216 Hs.390428 NM_005922 ENSG00000085511 MAP3K4 MAPKKK4|MEKK 4|MEKK4|MTK1|PRO0412 mitogen-activated protein kinase kinase kinase 4 protein-coding 359-423 chr6 56075780 56075973 + 2 NA intron (NM_030820, intron 18 of 29) intron (NM_030820, intron 18 of 29) 15786 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 458-230 chr7 10288636 10289014 + 2 NA Intergenic L1PB1|LINE|L1 -413851 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 404-56 chr10 123402085 123402320 + 2 NA Intergenic Intergenic 247800 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 548-23 chr10 44112782 44113181 + 2 NA Intergenic Intergenic -179769 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 300-468 chr8 84011752 84012022 + 2 NA Intergenic Intergenic -170900 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 642-20 chr11 81512827 81513392 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 377727 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 247-226 chr2 211582228 211582437 + 2 NA intron (NM_001042599, intron 19 of 26) intron (NM_001042599, intron 19 of 26) 844028 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 573-143 chr5 31661382 31661782 + 2 NA intron (NM_178140, intron 1 of 24) intron (NM_178140, intron 1 of 24) 22451 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 248-297 chr5 4250123 4250291 + 2 NA Intergenic Intergenic -523274 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 703-85 chr7 42554285 42554708 + 2 NA Intergenic MLT2B4|LTR|ERVL 151951 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 146-67 chr4 121600062 121600172 + 2 NA Intergenic L1ME3D|LINE|L1 96863 NM_001154 308 Hs.480653 NM_001154 ENSG00000164111 ANXA5 ANX5|ENX2|HEL-S-7|PP4|RPRGL3 annexin A5 protein-coding 528-212 chr5 152660363 152660752 + 2 NA intron (NR_109877, intron 4 of 4) L1M5|LINE|L1 -255278 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 171-34 chr14 83624286 83624428 + 2 NA Intergenic Intergenic 981725 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 285-307 chr4 65923068 65923286 + 2 NA Intergenic Intergenic -252682 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 245-122 chr14 46785218 46785400 + 2 NA Intergenic Intergenic -133528 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 380-27 chr1 173705293 173705491 + 2 NA Intergenic AluJb|SINE|Alu -9589 NM_014458 27252 Hs.495035 NM_014458 ENSG00000076321 KLHL20 KHLHX|KLEIP|KLHLX kelch like family member 20 protein-coding 352-184 chr17 63203056 63203257 + 2 NA intron (NM_025185, intron 6 of 25) L1M5|LINE|L1 236921 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 225-140 chr19 56380404 56380586 + 2 NA TTS (NR_003127) TTS (NR_003127) -12112 NM_001322072 79149 Hs.177688 NM_024303 ENSG00000131848 ZSCAN5A ZNF495|ZSCAN5 zinc finger and SCAN domain containing 5A protein-coding 332-320 chr3 34820681 34820871 + 2 NA Intergenic MER39B|LTR|ERV1 573247 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 271-106 chr12 94009822 94009983 + 2 NA Intergenic Intergenic -66296 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 448-60 chr12 40601748 40602152 + 2 NA Intergenic MIR|SINE|MIR -90489 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 393-38 chr10 71146738 71147051 + 2 NA Intergenic Intergenic -65676 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 344-495 chr8 111216875 111217090 + 2 NA intron (NR_125418, intron 1 of 3) intron (NR_125418, intron 1 of 3) 19221 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 400-289 chr5 93307366 93307729 + 2 NA Intergenic L1ME4b|LINE|L1 263796 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 267-164 chr19 36482701 36482905 + 2 NA intron (NM_001145344, intron 1 of 4) LTR40b|LTR|ERVL 6632 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 372-493 chr8 124985982 124986333 + 2 NA Intergenic AluJr|SINE|Alu 12041 NR_134457 105375744 Hs.575534 NR_134457 ENSG00000253513 LOC105375744 - uncharacterized LOC105375744 ncRNA 209-317 chr8 82072330 82072483 + 2 NA Intergenic Intergenic -230120 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 204-63 chr12 98660754 98660924 + 2 NA intron (NM_001160, intron 5 of 25) intron (NM_001160, intron 5 of 25) 15539 NM_181868 317 Hs.552567 NM_001160 ENSG00000120868 APAF1 APAF-1|CED4 apoptotic peptidase activating factor 1 protein-coding 442-221 chr4 137666380 137666799 + 2 NA Intergenic Intergenic 120858 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 373-56 chr10 70042859 70043223 + 2 NA Intergenic Intergenic -9805 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 310-493 chr7 101842059 101842310 + 2 NA intron (NM_181552, intron 1 of 23) L1M5|LINE|L1 24558 NM_181552 1523 Hs.191482 NM_001913 ENSG00000257923 CUX1 CASP|CDP|CDP/Cut|CDP1|COY1|CUTL1|CUX|Clox|Cux/CDP|GDDI|GOLIM6|Nbla10317|p100|p110|p200|p75 cut like homeobox 1 protein-coding 315-348 chr4 129212202 129212486 + 2 NA Intergenic L1ME3G|LINE|L1 116192 NM_001099783 132321 Hs.567679 NM_173487 ENSG00000151470 C4orf33 - chromosome 4 open reading frame 33 protein-coding 199-175 chr4 22327580 22327774 + 2 NA non-coding (NR_037877, exon 4 of 4) non-coding (NR_037877, exon 4 of 4) 11989 NR_037877 100505912 Hs.270471 NR_037877 LOC100505912 - uncharacterized LOC100505912 ncRNA 323-323 chr3 26917344 26917525 + 2 NA Intergenic Intergenic 222877 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 255-286 chr4 21339060 21339266 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -35257 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 466-9 chr1 105832223 105832658 + 2 NA Intergenic Intergenic 195813 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 426-155 chr2 221075152 221075539 + 2 NA Intergenic Intergenic 496959 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 177-92 chr20 17762755 17762882 + 2 NA Intergenic Intergenic 62870 NM_178477 140836 Hs.115366 NM_178477 ENSG00000125888 BANF2 BAF-L|BAF2|BAFL|C20orf179 barrier to autointegration factor 2 protein-coding 298-254 chr20 35199093 35199312 + 2 NA intron (NM_001355008, intron 4 of 14) Tigger1|DNA|TcMar-Tigger 27130 NM_006404 10544 Hs.647450 NM_006404 ENSG00000101000 PROCR CCCA|CCD41|EPCR protein C receptor protein-coding 203-12 chr1 105721893 105722022 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -103022 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 416-205 chr20 43143511 43143745 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 46278 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 203-142 chr3 31283653 31283808 + 2 NA Intergenic Intergenic -121943 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 437-274 chr8 82380884 82381252 + 2 NA Intergenic Intergenic -531036 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 812-45 chr7 3245890 3246688 + 2 NA Intergenic Intergenic -54963 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 236-56 chr10 113568603 113568800 + 2 NA intron (NM_001177660, intron 2 of 12) intron (NM_001177660, intron 2 of 12) 15648 NM_004132 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 504-274 chr9 23441737 23442114 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 230474 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 480-45 chr11 70751304 70751614 + 2 NA intron (NM_012309, intron 13 of 24) L1MEf|LINE|L1 -89618 NR_110766 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 387-104 chr14 58963426 58963791 + 2 NA intron (NR_110547, intron 4 of 5) intron (NR_110547, intron 4 of 5) 135320 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 717-45 chr2 123856177 123856665 + 2 NA Intergenic L1PA10|LINE|L1 168753 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 261-107 chr14 66407255 66407455 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -79016 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 398-281 chr5 131851986 131852302 + 2 NA intron (NM_001303622, intron 10 of 12) THE1C|LTR|ERVL-MaLR -55127 NM_001346114 96459 Hs.591273 NM_133372 ENSG00000217128 FNIP1 - folliculin interacting protein 1 protein-coding 390-68 chr12 24390630 24390937 + 2 NA intron (NM_152989, intron 2 of 17) L1PB4|LINE|L1 167512 NR_120472 101928471 Hs.569156 NR_120472 ENSG00000256120 SOX5-AS1 - SOX5 antisense RNA 1 ncRNA 738-10 chr11 43615650 43616236 + 2 NA Intergenic Intergenic 34549 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 350-434 chr6 41220795 41221101 + 2 NA Intergenic L1M2|LINE|L1 -3001 NR_027256 340206 Hs.93698 NR_027256 ENSG00000184106 TREML3P TLT3|TREML3 triggering receptor expressed on myeloid cells like 3, pseudogene pseudo 364-383 chr6 82865308 82865559 + 2 NA Intergenic Intergenic 200408 NM_001304437 90025 Hs.148609 NM_198920 ENSG00000118420 UBE3D C6orf157|H10BH|UBE2CBP|YJR141W ubiquitin protein ligase E3D protein-coding 528-128 chr2 75086885 75087282 + 2 NA intron (NM_015727, intron 2 of 3) MER33|DNA|hAT-Charlie -3729 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 281-122 chr14 65428500 65428663 + 2 NA intron (NR_038170, intron 1 of 10) intron (NR_038170, intron 1 of 10) 15851 NR_038170 2530 Hs.597649 NM_004480 ENSG00000033170 FUT8 CDGF|CDGF1 fucosyltransferase 8 protein-coding 365-329 chr5 110238549 110238810 + 2 NA Intergenic Intergenic 275236 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 246-407 chr8 99300637 99300819 + 2 NA intron (NM_017890, intron 19 of 61) intron (NM_017890, intron 19 of 61) 236002 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 215-348 chrX 75105881 75106033 + 2 NA intron (NM_001271696, intron 3 of 15) L1P4|LINE|L1 50326 NM_001271697 22 Hs.370480 NM_004299 ENSG00000131269 ABCB7 ABC7|ASAT|Atm1p|EST140535 ATP binding cassette subfamily B member 7 protein-coding 449-221 chr5 128734945 128735247 + 2 NA Intergenic HERVH-int|LTR|ERV1 -196851 NM_001999 2201 Hs.519294 NM_001999 ENSG00000138829 FBN2 CCA|DA9|EOMD fibrillin 2 protein-coding 403-334 chrX 68066635 68066987 + 2 NA intron (NM_002547, intron 20 of 24) MIR|SINE|MIR 366684 NM_002547 4983 Hs.128824 NM_002547 ENSG00000079482 OPHN1 ARHGAP41|MRX60|OPN1 oligophrenin 1 protein-coding 150-95 chr6 62460900 62461033 + 2 NA Intergenic Intergenic -174739 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 487-116 chr18 8860393 8860784 + 2 NA Intergenic Intergenic 143207 NM_015210 23255 Hs.707920 NM_015210 ENSG00000168502 MTCL1 CCDC165|KIAA0802|SOGA2 microtubule crosslinking factor 1 protein-coding 327-451 chr7 22347183 22347481 + 2 NA intron (NM_012294, intron 1 of 25) intron (NM_012294, intron 1 of 25) 9822 NM_012294 9771 Hs.174768 NM_012294 ENSG00000136237 RAPGEF5 GFR|MR-GEF|REPAC Rap guanine nucleotide exchange factor 5 protein-coding 372-358 chr4 59986139 59986463 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -936318 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 200-253 chr7 46721823 46721999 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -24789 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 364-329 chr5 13020424 13020626 + 2 NA intron (NR_147005, intron 2 of 4) intron (NR_147005, intron 2 of 4) 12361 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 311-132 chr14 46500524 46500786 + 2 NA intron (NR_102699, intron 2 of 2) intron (NR_102699, intron 2 of 2) 29296 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 387-253 chr4 90266278 90266547 + 2 NA intron (NM_207491, intron 1 of 7) intron (NM_207491, intron 1 of 7) 31381 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 307-104 chr12 47387939 47388137 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -23769 NR_039715 100616478 NR_039715 ENSG00000264906 MIR4494 - microRNA 4494 ncRNA 278-167 chr18 4173761 4173951 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -90746 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 366-475 chrUn_GL000216v2 51650 51920 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 417-220 chr5 59733228 59733609 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) -29715 NR_030308 693167 NR_030308 ENSG00000202601 MIR582 MIRN582|hsa-mir-582 microRNA 582 ncRNA 386-5 chr1 41624356 41624576 + 2 NA intron (NM_024503, intron 3 of 8) Charlie15b|DNA|hAT-Charlie -139783 NM_001302269 1907 Hs.1407 NM_001956 ENSG00000127129 EDN2 ET-2|ET2|PPET2 endothelin 2 protein-coding 601-49 chr16 49392943 49393524 + 2 NA intron (NM_144602, intron 3 of 4) L1M5|LINE|L1 19429 NM_144602 123970 Hs.125875 NM_144602 ENSG00000166152 C16orf78 - chromosome 16 open reading frame 78 protein-coding 248-11 chr1 105529734 105529922 + 2 NA Intergenic L1MB3|LINE|L1 89107 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 250-203 chr2 55321716 55321878 + 2 NA intron (NM_001254943, intron 18 of 33) L1ME3G|LINE|L1 39478 NR_027258 344405 Hs.445292 NM_001080459 ENSG00000162997 PRORSD1P NCRNA00117|PRDXDD1P|Prdxdd1|Ybakd1 prolyl-tRNA synthetase associated domain containing 1, pseudogene pseudo 315-105 chr12 46877307 46877492 + 2 NA Intergenic Intergenic -51402 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 299-6 chr1 37104567 37104729 + 2 NA Intergenic Intergenic -56915 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 361-407 chr7 14489199 14489402 + 2 NA intron (NM_001350717, intron 19 of 24) intron (NM_001350717, intron 19 of 24) 352150 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 537-279 chrX 14534302 14534647 + 2 NA intron (NM_001118886, intron 2 of 8) intron (NM_001118886, intron 2 of 8) 4938 NM_001118886 2742 Hs.2700 NM_002063 ENSG00000101958 GLRA2 GLR glycine receptor alpha 2 protein-coding 205-40 chr10 103515455 103515632 + 2 NA intron (NR_120676, intron 1 of 2) intron (NR_120676, intron 1 of 2) 1899 NR_120675 102724341 Hs.599425 NR_120675 ENSG00000235470 NEURL1-AS1 - NEURL1 antisense RNA 1 ncRNA 222-249 chr3 151528329 151528460 + 2 NA Intergenic Arthur1A|DNA|hAT-Tip100 37601 NR_049818 100847036 NR_049818 ENSG00000264330 MIR5186 - microRNA 5186 ncRNA 426-255 chr6 61606959 61607294 + 2 NA intron (NR_146870, intron 13 of 15) intron (NR_146870, intron 13 of 15) 32996 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 403-175 chr20 16645964 16646206 + 2 NA Intergenic MLT2D|LTR|ERVL -72637 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 337-148 chr14 45329737 45330045 + 2 NA Intergenic Intergenic -76689 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 437-54 chr12 82994295 82994656 + 2 NA intron (NM_152588, intron 8 of 11) intron (NM_152588, intron 8 of 11) 307320 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 556-59 chr13 104280096 104280622 + 2 NA Intergenic L1M5|LINE|L1 855159 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 252-318 chr5 15142285 15142467 + 2 NA Intergenic Intergenic 124184 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 500-87 chr14 87248299 87248740 + 2 NA Intergenic L1ME2|LINE|L1 342741 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 590-78 chr2 34527580 34528009 + 2 NA Intergenic MIRb|SINE|MIR -149763 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 220-297 chr5 109872099 109872235 + 2 NA Intergenic Intergenic -11015 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 292-216 chr2 57653052 57653322 + 2 NA Intergenic L1MB8|LINE|L1 -254464 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 499-62 chr13 34185262 34185593 + 2 NA Intergenic Intergenic -162616 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 304-497 chr8 20166410 20166663 + 2 NA intron (NM_003053, intron 8 of 15) L1MC4a|LINE|L1 16600 NM_001142324 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 363-167 chr16 63382957 63383262 + 2 NA Intergenic Intergenic -1346671 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 242-93 chr13 55562902 55563118 + 2 NA Intergenic Penelope1_Vert|LINE|Penelope 388556 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 297-514 chr9 102228539 102228794 + 2 NA Intergenic Intergenic -290971 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 211-138 chr2 36164447 36164600 + 2 NA Intergenic Intergenic 191047 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 194-154 chr4 116747906 116748049 + 2 NA Intergenic L1M4|LINE|L1 337599 NM_152402 133022 Hs.570737 NM_152402 ENSG00000174599 TRAM1L1 - translocation associated membrane protein 1 like 1 protein-coding 198-207 chr6 8488211 8488397 + 2 NA intron (NR_038980, intron 2 of 4) intron (NR_038980, intron 2 of 4) 52681 NR_038979 100506207 Hs.311049 NR_038979 ENSG00000285219 LOC100506207 - uncharacterized LOC100506207 ncRNA 388-256 chr4 96256604 96256981 + 2 NA Intergenic LTR40a|LTR|ERVL -53911 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 380-283 chr4 96284706 96285060 + 2 NA Intergenic Intergenic -25820 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 304-195 chr17 58030297 58030523 + 2 NA Intergenic L1MC3|LINE|L1 -23064 NR_034041 6426 Hs.68714 NM_006924 ENSG00000136450 SRSF1 ASF|SF2|SF2p33|SFRS1|SRp30a serine and arginine rich splicing factor 1 protein-coding 260-17 chr1 110402812 110402979 + 2 NA intron (NM_006402, intron 3 of 3) Tigger3b|DNA|TcMar-Tigger -4914 NR_102697 101410535 Hs.559121 NR_102697 LAMTOR5-AS1 - LAMTOR5 antisense RNA 1 ncRNA 622-85 chr3 68490282 68490786 + 2 NA intron (NM_001252216, intron 3 of 4) Charlie1|DNA|hAT-Charlie -10103 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 278-208 chr2 46514875 46515056 + 2 NA intron (NM_001371283, intron 3 of 3) L1MB1|LINE|L1 -27525 NM_012249 23433 Hs.709193 NM_012249 ENSG00000119729 RHOQ ARHQ|HEL-S-42|RASL7A|TC10|TC10A ras homolog family member Q protein-coding 437-302 chrX 83057363 83057746 + 2 NA Intergenic L1MB7|LINE|L1 -450736 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 246-56 chr10 105293956 105294127 + 2 NA Intergenic L1M2|LINE|L1 526292 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 308-507 chr8 117822697 117822914 + 2 NA intron (NM_000127, intron 4 of 10) intron (NM_000127, intron 4 of 10) 98108 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 570-106 chr2 59431203 59431669 + 2 NA Intergenic L1PA7|LINE|L1 213728 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 222-237 chr3 77741829 77742012 + 2 NA Intergenic Intergenic 307043 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 205-218 chr5 40839972 40840133 + 2 NA Intergenic Intergenic -1315 NM_032587 84674 Hs.200242 NM_032587 ENSG00000132357 CARD6 CINCIN1 caspase recruitment domain family member 6 protein-coding 357-403 chr6 166128865 166129060 + 2 NA Intergenic L1ME2|LINE|L1 31242 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 179-66 chr3 49137089 49137254 + 2 NA Intergenic MER63B|DNA|hAT-Blackjack -4121 NM_002292 3913 Hs.439726 NM_002292 ENSG00000172037 LAMB2 LAMS|NPHS5 laminin subunit beta 2 protein-coding 409-171 chr20 15841811 15842176 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 81321 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 364-270 chr3 24645075 24645305 + 2 NA Intergenic Intergenic -149482 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 237-310 chr5 151987878 151988020 + 2 NA intron (NR_109876, intron 1 of 2) L1M2|LINE|L1 29051 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 300-386 chr6 45539791 45540021 + 2 NA intron (NM_001015051, intron 7 of 7) intron (NM_001015051, intron 7 of 7) 117631 NM_001369405 860 Hs.535845 NM_004348 ENSG00000124813 RUNX2 AML3|CBF-alpha-1|CBFA1|CCD|CCD1|CLCD|OSF-2|OSF2|PEA2aA|PEBP2aA RUNX family transcription factor 2 protein-coding 195-139 chr3 16259328 16259432 + 2 NA 3' UTR (NM_001047434, exon 2 of 2) 3' UTR (NM_001047434, exon 2 of 2) 5563 NM_206831 285381 Hs.388087 NM_206831 ENSG00000154813 DPH3 DELGIP|DELGIP1|DESR1|DPH3A|KTI11|ZCSL2 diphthamide biosynthesis 3 protein-coding 330-360 chr3 117745086 117745365 + 2 NA Intergenic Intergenic -54300 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 387-261 chr4 130990762 130990981 + 2 NA Intergenic L1MA4|LINE|L1 614510 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 538-181 chr4 105178442 105178909 + 2 NA intron (NR_126420, intron 2 of 5) L1MC1|LINE|L1 31990 NM_001127208 54790 Hs.367639 NM_017628 ENSG00000168769 TET2 KIAA1546|MDS tet methylcytosine dioxygenase 2 protein-coding 234-259 chr3 177872636 177872797 + 2 NA intron (NR_110826, intron 1 of 2) L1ME2|LINE|L1 55851 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 373-267 chr3 149959836 149960094 + 2 NA intron (NM_183383, intron 7 of 8) intron (NM_183383, intron 7 of 8) 10930 NM_002628 5217 Hs.91747 NM_002628 ENSG00000070087 PFN2 D3S1319E|PFL profilin 2 protein-coding 319-172 chr16 22698820 22699090 + 2 NA Intergenic L2a|LINE|L2 -115207 NM_006043 9956 Hs.115830 NM_006043 ENSG00000122254 HS3ST2 30ST2|3OST2 heparan sulfate-glucosamine 3-sulfotransferase 2 protein-coding 353-533 chr8 112454111 112454377 + 2 NA intron (NM_052900, intron 31 of 68) L1PA16|LINE|L1 -189249 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 482-217 chr6 11239391 11239840 + 2 NA intron (NM_001142393, intron 2 of 7) intron (NM_001142393, intron 2 of 7) -6933 NM_001271033 4739 Hs.37982 NM_006403 ENSG00000111859 NEDD9 CAS-L|CAS2|CASL|CASS2|HEF1 neural precursor cell expressed, developmentally down-regulated 9 protein-coding 361-478 chr9 73674879 73675153 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 523151 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 413-291 chr8 23879544 23879807 + 2 NA Intergenic Intergenic -24869 NM_003155 6781 Hs.25590 NM_003155 ENSG00000159167 STC1 STC stanniocalcin 1 protein-coding 132-95 chr9 12063515 12063642 + 2 NA Intergenic Intergenic -629807 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 291-283 chr3 26251479 26251761 + 2 NA Intergenic Intergenic -371186 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 489-58 chr12 78588465 78588811 + 2 NA Intergenic Intergenic -228892 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 343-577 chr9 25996894 25997078 + 2 NA Intergenic HERVH-int|LTR|ERV1 -69689 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 326-255 chr2 108869432 108869652 + 2 NA intron (NR_147237, intron 13 of 14) L1M4c|LINE|L1 82771 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 268-129 chr15 49143047 49143276 + 2 NA intron (NM_001143887, intron 3 of 12) L2a|LINE|L2 12438 NM_004236 9318 Hs.369614 NM_004236 ENSG00000166200 COPS2 ALIEN|CSN2|SGN2|TRIP15 COP9 signalosome subunit 2 protein-coding 279-359 chr6 48978288 48978538 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger 484840 NM_000255 4594 Hs.485527 NM_000255 ENSG00000146085 MMUT MCM|MUT methylmalonyl-CoA mutase protein-coding 269-413 chr8 124298096 124298263 + 2 NA Intergenic L1ME1|LINE|L1 -50781 NR_125420 101927588 Hs.617072 NR_125420 ENSG00000214803 LOC101927588 - uncharacterized LOC101927588 ncRNA 201-116 chr2 25929516 25929715 + 2 NA intron (NM_002254, intron 6 of 7) intron (NM_002254, intron 6 of 7) -51128 NM_018263 55252 Hs.119815 NM_018263 ENSG00000143970 ASXL2 ASXH2|SHAPNS ASXL transcriptional regulator 2 protein-coding 319-85 chr11 14178593 14178800 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 179789 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 193-71 chr16 24178441 24178604 + 2 NA intron (NM_002738, intron 12 of 16) intron (NM_002738, intron 12 of 16) -24594 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 290-2 chr1 29440310 29440563 + 2 NA Intergenic L1M7|LINE|L1 -90322 NR_110758 101928460 Hs.434659 NR_110758 ENSG00000230523 LINC01756 - long intergenic non-protein coding RNA 1756 ncRNA 154-88 chr5 42715550 42715698 + 2 NA intron (NM_001242462, intron 7 of 7) intron (NM_001242462, intron 7 of 7) -41194 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 294-326 chr4 36986500 36986763 + 2 NA Intergenic L1PA12|LINE|L1 -15148 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 164-93 chr5 8807768 8807892 + 2 NA Intergenic L1MA7|LINE|L1 -31902 NR_109932 101929284 Hs.403715 NR_109932 LINC02199 - long intergenic non-protein coding RNA 2199 ncRNA 206-67 chr14 62191772 62191941 + 2 NA Intergenic MER31-int|LTR|ERV1 -51883 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 486-6 chr1 79615000 79615388 + 2 NA Intergenic Intergenic -608464 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 270-116 chr14 85725963 85726131 + 2 NA Intergenic Intergenic 192698 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 293-486 chrX 51549544 51549823 + 2 NA Intergenic Intergenic -42242 NR_110654 102723426 Hs.584513 NR_110654 LINC01496 - long intergenic non-protein coding RNA 1496 ncRNA 265-321 chr5 141330840 141331052 + 2 NA exon (NM_018912, exon 1 of 4) exon (NM_018912, exon 1 of 4) 261 NM_018912 56114 Hs.368160 NM_018912 ENSG00000204956 PCDHGA1 PCDH-GAMMA-A1 protocadherin gamma subfamily A, 1 protein-coding 532-148 chr21 35136385 35136795 + 2 NA Intergenic Intergenic -87292 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 220-139 chr18 6433538 6433713 + 2 NA Intergenic Intergenic -18366 NM_001365765 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 418-296 chr8 134119672 134119972 + 2 NA Intergenic Intergenic 233326 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 316-576 chr9 19572282 19572452 + 2 NA intron (NM_020344, intron 6 of 9) MSTA|LTR|ERVL-MaLR 163358 NM_001010887 340485 Hs.41379 NM_001010887 ENSG00000177076 ACER2 ALKCDase2|ASAH3L alkaline ceramidase 2 protein-coding 272-231 chr2 212099148 212099311 + 2 NA intron (NM_001042599, intron 2 of 26) AluYj4|SINE|Alu 327131 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 192-72 chr15 63197218 63197324 + 2 NA intron (NM_016530, intron 1 of 7) intron (NM_016530, intron 1 of 7) 7665 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 222-323 chr6 51445004 51445166 + 2 NA Intergenic L1M3a|LINE|L1 -176785 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 464-14 chr10 8476792 8477227 + 2 NA Intergenic MIR|SINE|MIR 117382 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 350-117 chr13 71725669 71725860 + 2 NA intron (NM_080759, intron 1 of 10) intron (NM_080759, intron 1 of 10) 141428 NM_004392 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 507-271 chr9 31721073 31721556 + 2 NA Intergenic AluSz6|SINE|Alu -339824 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 265-105 chr14 60934671 60934903 + 2 NA intron (NM_001177963, intron 6 of 6) intron (NM_001177963, intron 6 of 6) 46292 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 394-75 chr12 13501172 13501551 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -124616 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 306-387 chr5 22539084 22539309 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 314148 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 234-289 chr4 146230985 146231168 + 2 NA 3' UTR (NM_001371071, exon 7 of 7) 3' UTR (NM_001371071, exon 7 of 7) 16538 NM_001371071 313-176 chr15 101430660 101430953 + 2 NA intron (NM_138325, intron 4 of 13) MIR|SINE|MIR 58901 NM_002570 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 313-305 chr20 18359499 18359712 + 2 NA Intergenic Intergenic -19444 NR_034167 440757 Hs.120399 NM_001004344 ENSG00000237282 LINC00851 DZANK1-AS1 long intergenic non-protein coding RNA 851 ncRNA 501-35 chr11 32683908 32684280 + 2 NA intron (NM_001008391, intron 6 of 17) AluJo|SINE|Alu 100263 NM_006360 10480 Hs.502244 NM_006360 ENSG00000149100 EIF3M B5|GA17|PCID1|TANGO7|hfl-B5 eukaryotic translation initiation factor 3 subunit M protein-coding 502-173 chr3 41663568 41663949 + 2 NA intron (NR_136342, intron 27 of 34) L1M7|LINE|L1 298345 NM_001322501 54986 Hs.656192 NM_017886 ENSG00000168038 ULK4 FAM7C1|REC01035 unc-51 like kinase 4 protein-coding 249-255 chr3 13588773 13588973 + 2 NA intron (NM_001004019, intron 2 of 17) intron (NM_001004019, intron 2 of 17) 20133 NM_001165035 2199 Hs.198862 NM_001998 ENSG00000163520 FBLN2 - fibulin 2 protein-coding 203-120 chr2 123226830 123226984 + 2 NA Intergenic L1PBa|LINE|L1 -153426 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 337-540 chr8 87783943 87784124 + 2 NA Intergenic Intergenic 89982 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 288-215 chr2 186248890 186249127 + 2 NA Intergenic LTR79|LTR|ERVL -162691 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 427-124 chr2 112840437 112840784 + 2 NA Intergenic Intergenic -3831 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 279-153 chr19 21444380 21444563 + 2 NA Intergenic Intergenic -39244 NR_037194 400680 Hs.710554 NR_037194 ENSG00000268658 LINC00664 - long intergenic non-protein coding RNA 664 ncRNA 184-15 chr1 176241825 176241958 + 2 NA Intergenic L1MCa|LINE|L1 -34605 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 505-44 chr11 21117222 21117565 + 2 NA intron (NM_201551, intron 13 of 18) L2a|LINE|L2 447807 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 383-256 chr3 121394163 121394433 + 2 NA intron (NM_001348343, intron 23 of 27) L1PB4|LINE|L1 151690 NM_199420 10721 Hs.241517 NM_199420 ENSG00000051341 POLQ PRO0327 DNA polymerase theta protein-coding 303-55 chr10 92870452 92870709 + 2 NA intron (NM_001319195, intron 1 of 21) L1M1|LINE|L1 22060 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 446-33 chr10 19047194 19047457 + 2 NA Intergenic L2c|LINE|L2 -1476 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 458-236 chr7 53712151 53712524 + 2 NA intron (NR_038371, intron 4 of 5) L1MC3|LINE|L1 99594 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 461-7 chr1 94265644 94266065 + 2 NA Intergenic Intergenic -18108 NM_001328665 9411 Hs.483238 NM_004815 ENSG00000137962 ARHGAP29 PARG1 Rho GTPase activating protein 29 protein-coding 304-123 chr12 117461570 117461816 + 2 NA 3' UTR (NM_173598, exon 20 of 20) 3' UTR (NM_173598, exon 20 of 20) -99891 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 513-145 chr2 133448892 133449247 + 2 NA intron (NM_207481, intron 3 of 17) L2c|LINE|L2 119394 NM_207481 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 338-306 chr21 19009610 19009926 + 2 NA Intergenic L1MC1|LINE|L1 -249956 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 231-18 chr1 168163771 168163918 + 2 NA Intergenic AluJb|SINE|Alu -15118 NM_001031800 261726 Hs.209431 NM_152902 ENSG00000143155 TIPRL TIP|TIP41|TIPRL1 TOR signaling pathway regulator protein-coding 359-4 chr1 18361385 18361701 + 2 NA intron (NM_032880, intron 4 of 9) intron (NM_032880, intron 4 of 9) -119387 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 260-278 chr3 105035876 105036106 + 2 NA Intergenic Intergenic -330722 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 228-257 chr4 132315885 132316073 + 2 NA Intergenic MER72|LTR|ERV1 -275110 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 230-270 chr4 105255522 105255730 + 2 NA intron (NM_001127208, intron 6 of 10) L1MC1|LINE|L1 97255 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 428-12 chr1 172125299 172125669 + 2 NA intron (NR_146559, intron 14 of 20) L2|LINE|L2 -13324 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 376-68 chr11 41633496 41633738 + 2 NA Intergenic L1PA15|LINE|L1 -80951 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 181-47 chr15 46945281 46945397 + 2 NA Intergenic Intergenic -238750 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 428-17 chr1 196538352 196538707 + 2 NA intron (NM_001287820, intron 1 of 26) LTR18A|LTR|ERVL 43952 NR_039888 100616363 NR_039888 ENSG00000265986 MIR4735 - microRNA 4735 ncRNA 177-144 chr6 163138892 163139013 + 2 NA intron (NM_001080379, intron 4 of 4) intron (NM_001080379, intron 4 of 4) 53050 NR_122120 729658 Hs.728991 NR_122120 PACRG-AS3 - PACRG antisense RNA 3 ncRNA 733-66 chr5 145906138 145906850 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -30084 NM_152550 153769 Hs.443728 NM_152550 ENSG00000156463 SH3RF2 HEPP1|POSHER|PPP1R39|RNF158 SH3 domain containing ring finger 2 protein-coding 299-162 chr16 73468782 73469009 + 2 NA Intergenic Intergenic 82090 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 191-28 chr10 109795450 109795582 + 2 NA Intergenic L1PA3|LINE|L1 127730 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 247-358 chr6 50010283 50010469 + 2 NA intron (NM_001037728, intron 1 of 1) intron (NM_001037728, intron 1 of 1) 11605 NM_001037728 245913 Hs.571093 NM_001037497 ENSG00000203970 DEFB110 DEFB-10|DEFB-11|DEFB111 defensin beta 110 protein-coding 252-154 chr17 54979941 54980175 + 2 NA intron (NM_178509, intron 1 of 17) intron (NM_178509, intron 1 of 17) -11273 NM_001321518 1353 Hs.591171 NM_004375 ENSG00000166260 COX11 COX11P cytochrome c oxidase copper chaperone COX11 protein-coding 460-35 chr10 44411231 44411583 + 2 NA Intergenic L1PA7|LINE|L1 -26310 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 496-49 chr11 87215078 87215501 + 2 NA intron (NR_033149, intron 4 of 13) MLT1H|LTR|ERVL-MaLR 177355 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 353-261 chr2 160568496 160568708 + 2 NA Intergenic L1MC5a|LINE|L1 -74795 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 502-87 chr14 66891353 66891742 + 2 NA intron (NM_001024218, intron 5 of 21) L1MB4|LINE|L1 -297893 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 407-82 chr14 60885210 60885524 + 2 NA intron (NM_001177963, intron 6 of 6) L1MA2|LINE|L1 95712 NM_001350254 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 521-241 chr7 92349474 92349885 + 2 NA intron (NM_019004, intron 7 of 19) intron (NM_019004, intron 7 of 19) 87635 NR_145992 105375396 NM_001317905 ENSG00000230927 TMBIM7P - transmembrane BAX inhibitor motif containing 7, pseudogene pseudo 358-274 chr21 28702647 28702998 + 2 NA Intergenic L1PA15|LINE|L1 163504 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 193-100 chr2 51322175 51322275 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 289624 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 226-373 chr9 18883598 18883785 + 2 NA intron (NM_001040272, intron 23 of 28) L1MB3|LINE|L1 149518 NM_001287050 158297 Hs.731593 NM_153707 ENSG00000155875 SAXO1 C9orf138|FAM154A stabilizer of axonemal microtubules 1 protein-coding 255-90 chr13 55797211 55797362 + 2 NA Intergenic L1MCc|LINE|L1 622832 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 258-228 chr20 16147761 16147910 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -161953 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 401-228 chr4 61526457 61526819 + 2 NA intron (NM_001371343, intron 4 of 23) AluJr|SINE|Alu 324466 NM_001371342 383-59 chr11 94205857 94206219 + 2 NA Intergenic L1MA8|LINE|L1 77197 NM_015368 24145 Hs.591976 NM_015368 ENSG00000110218 PANX1 MRS1|PX1|UNQ2529 pannexin 1 protein-coding 228-207 chr22 48070755 48070954 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -203510 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 257-79 chr11 123148401 123148553 + 2 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) 46771 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 381-65 chr10 119322633 119322871 + 2 NA intron (NM_005308, intron 1 of 15) L1MB3|LINE|L1 -55220 NR_039829 100616398 NR_039829 ENSG00000265719 MIR4681 - microRNA 4681 ncRNA 392-165 chr2 185363034 185363244 + 2 NA Intergenic HERVL-int|LTR|ERVL -196067 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 271-343 chr5 54358502 54358671 + 2 NA intron (NR_126379, intron 1 of 4) MER33|DNA|hAT-Charlie 37642 NR_126379 104355136 Hs.559024 NR_126379 ENSG00000249069 LINC01033 - long intergenic non-protein coding RNA 1033 ncRNA 214-83 chr12 41937091 41937270 + 2 NA Intergenic Intergenic 172991 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 346-195 chr17 61363233 61363480 + 2 NA intron (NR_136397, intron 1 of 2) intron (NR_136397, intron 1 of 2) 4348 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 487-84 chr14 50970644 50970982 + 2 NA Intergenic Intergenic -26330 NM_002863 5836 Hs.282417 NM_002863 ENSG00000100504 PYGL GSD6 glycogen phosphorylase L protein-coding 320-40 chr1 223426901 223427185 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 33628 NM_152610 164127 Hs.192090 NM_152610 ENSG00000178395 CCDC185 C1orf65 coiled-coil domain containing 185 protein-coding 220-94 chr12 89114485 89114696 + 2 NA Intergenic Intergenic -94898 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 333-94 chr11 80500660 80500844 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 262051 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 356-289 chr20 43401289 43401547 + 2 NA Intergenic Intergenic -56478 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 218-305 chr7 68622350 68622508 + 2 NA Intergenic Intergenic 602176 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 659-24 chr12 42327617 42328185 + 2 NA intron (NM_001364830, intron 1 of 6) MER102a|DNA|hAT-Charlie 1734 NM_001364830 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 254-187 chr2 79672059 79672231 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -22786 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 287-255 chr3 96140797 96140959 + 2 NA Intergenic L1PA13|LINE|L1 -219086 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 332-472 chr7 25537752 25537918 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 125305 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 262-19 chr1 106459913 106460139 + 2 NA Intergenic L1MA8|LINE|L1 -358213 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 148-94 chr8 109104437 109104547 + 2 NA intron (NM_003301, intron 2 of 2) intron (NM_003301, intron 2 of 2) 17864 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 204-224 chr4 115515233 115515400 + 2 NA Intergenic Intergenic -401696 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 545-177 chr5 18306112 18306591 + 2 NA Intergenic Intergenic 499077 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 392-173 chr20 39171253 39171608 + 2 NA Intergenic Intergenic 53318 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 540-30 chr10 66210712 66211047 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 639454 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 257-440 chr9 99018345 99018507 + 2 NA intron (NM_001855, intron 11 of 41) L1ME4a|LINE|L1 74519 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 304-34 chr10 8894650 8894912 + 2 NA Intergenic Intergenic -3208 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 208-245 chr7 45871567 45871696 + 2 NA Intergenic Intergenic -16857 NM_000596 3484 Hs.642938 NM_000596 ENSG00000146678 IGFBP1 AFBP|IBP1|IGF-BP25|PP12|hIGFBP-1 insulin like growth factor binding protein 1 protein-coding 316-329 chr21 15288918 15289162 + 2 NA Intergenic Intergenic -224040 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 207-73 chr13 99648727 99648895 + 2 NA intron (NR_104592, intron 1 of 9) intron (NR_104592, intron 1 of 9) 5752 NR_036191 100422861 NR_036191 ENSG00000263615 MIR4306 mir-4306 microRNA 4306 ncRNA 329-539 chr7 53684553 53684784 + 2 NA intron (NR_038371, intron 5 of 5) L1MC3|LINE|L1 127263 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 320-262 chr2 78349160 78349393 + 2 NA Intergenic Intergenic -58545 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 388-188 chr20 54238392 54238675 + 2 NA Intergenic Intergenic 30446 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 450-247 chr5 116276900 116277341 + 2 NA intron (NM_001308080, intron 5 of 6) intron (NM_001308080, intron 5 of 6) 21377 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 214-241 chr4 81585621 81585825 + 2 NA Intergenic Intergenic -113816 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 324-544 chr8 121700264 121700542 + 2 NA Intergenic L1ME3A|LINE|L1 -58963 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 432-166 chr21 44826778 44827125 + 2 NA Intergenic Intergenic -8822 NM_001286416 6612 Hs.474005 NM_006936 ENSG00000184900 SUMO3 SMT3A|SMT3H1|SUMO-3|Smt3B small ubiquitin like modifier 3 protein-coding 335-307 chr21 10706851 10707099 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 185461 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 253-218 chr20 15634164 15634295 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 289085 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 658-33 chr12 37870542 37871062 + 2 NA Intergenic ALR/Alpha|Satellite|centr -445972 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 879 chr1 175744779 175745419 + 2 NA Intergenic Intergenic -1504 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 400-147 chr19 57697110 57697468 + 2 NA non-coding (NR_110974, exon 4 of 4) non-coding (NR_110974, exon 4 of 4) 11915 NR_110974 7710 Hs.646378 NM_003444 ENSG00000179909 ZNF154 pHZ-92 zinc finger protein 154 protein-coding 414-101 chr15 91181779 91182058 + 2 NA intron (NM_001323040, intron 2 of 12) (TATA)n|Simple_repeat|Simple_repeat 80122 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 328-571 chr8 103381521 103381700 + 2 NA intron (NM_138455, intron 3 of 3) intron (NM_138455, intron 3 of 3) 9103 NM_001256099 115908 Hs.405614 NM_138455 ENSG00000164932 CTHRC1 - collagen triple helix repeat containing 1 protein-coding 396-329 chr7 40775089 40775369 + 2 NA intron (NM_024728, intron 14 of 14) intron (NM_024728, intron 14 of 14) 204710 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 304-16 chr1 112107458 112107705 + 2 NA Intergenic L1M3f|LINE|L1 117045 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 245-84 chr11 97892759 97892920 + 2 NA Intergenic Intergenic -1128110 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 466-177 chr3 133102024 133102355 + 2 NA intron (NM_001136469, intron 2 of 5) Tigger13a|DNA|TcMar-Tigger -22632 NM_001282865 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 396-370 chr9 31532116 31532384 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 -150760 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 166-46 chr2 56711183 56711289 + 2 NA Intergenic Intergenic -525466 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 267-242 chr21 37382851 37383083 + 2 NA intron (NM_001347723, intron 1 of 10) intron (NM_001347723, intron 1 of 10) 15410 NM_101395 1859 Hs.368240 NM_001396 ENSG00000157540 DYRK1A DYRK|DYRK1|HP86|MNB|MNBH|MRD7 dual specificity tyrosine phosphorylation regulated kinase 1A protein-coding 535-89 chr15 76636112 76636498 + 2 NA intron (NR_148227, intron 21 of 32) L1MB4|LINE|L1 49658 NR_037464 100500855 NR_037464 ENSG00000266449 MIR3713 - microRNA 3713 ncRNA 378-90 chr11 99220223 99220451 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 199388 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 263-194 chr2 50982757 50982923 + 2 NA intron (NM_004801, intron 2 of 21) intron (NM_004801, intron 2 of 21) 49292 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 429-175 chr20 40842633 40842905 + 2 NA Intergenic MIR3|SINE|MIR -128146 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 505-304 chr8 71048040 71048424 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 308474 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 217-110 chr14 45903115 45903287 + 2 NA Intergenic Intergenic -160958 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 313-97 chr11 114483746 114483961 + 2 NA Intergenic Intergenic 44386 NM_015523 25996 Hs.677190 NM_015523 ENSG00000076043 REXO2 CGI-114|REX2|RFN|SFN RNA exonuclease 2 protein-coding 372-253 chr2 124506416 124506652 + 2 NA intron (NM_130773, intron 8 of 23) intron (NM_130773, intron 8 of 23) 481247 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 469-97 chr15 88351766 88352074 + 2 NA Intergenic Intergenic -95181 NM_002530 4916 Hs.185701 NM_002530 ENSG00000140538 NTRK3 GP145-TrkC|TRKC|gp145(trkC) neurotrophic receptor tyrosine kinase 3 protein-coding 335-184 chr16 25809991 25810185 + 2 NA intron (NM_006040, intron 1 of 1) L1MD2|LINE|L1 118129 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 295-288 chr3 30235164 30235334 + 2 NA Intergenic L1MEd|LINE|L1 -283619 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 397-250 chr5 40922885 40923148 + 2 NA intron (NM_000587, intron 1 of 17) L1M1|LINE|L1 13519 NM_000587 730 Hs.78065 NM_000587 ENSG00000112936 C7 - complement C7 protein-coding 338-222 chr18 2640647 2640873 + 2 NA Intergenic Intergenic 14635 NR_033754 645158 Hs.712861 NR_033754 ENSG00000266405 CBX3P2 - chromobox 3 pseudogene 2 pseudo 298-436 chr7 69431162 69431355 + 2 NA Intergenic AluJr|SINE|Alu 166366 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 629-87 chr4 57614801 57615173 + 2 NA Intergenic Intergenic 189115 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 324-123 chr12 83011157 83011351 + 2 NA intron (NM_152588, intron 8 of 11) MIR|SINE|MIR 324099 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 327-254 chr2 49720911 49721220 + 2 NA Intergenic L1ME2|LINE|L1 253138 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 261-175 chr2 29977832 29978051 + 2 NA Intergenic Intergenic -56355 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 671-17 chr11 79592543 79592987 + 2 NA Intergenic Intergenic -151735 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 175-31 chr11 22441475 22441619 + 2 NA Intergenic L2c|LINE|L2 50472 NR_120583 102723378 Hs.374255 NR_120583 ENSG00000255323 LINC01495 - long intergenic non-protein coding RNA 1495 ncRNA 236-332 chr7 68793570 68793741 + 2 NA Intergenic L1MB5|LINE|L1 773402 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 390-311 chr5 164992129 164992407 + 2 NA Intergenic Intergenic 521989 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 468-326 chr8 133959340 133959663 + 2 NA Intergenic Intergenic 73005 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 155-21 chr10 55944859 55944974 + 2 NA Intergenic Intergenic -316974 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 276-32 chr1 193792394 193792626 + 2 NA Intergenic Intergenic 487765 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 227-368 chr8 60491370 60491585 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -25433 NM_001242644 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 439-102 chr17 5634060 5634338 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -49690 NM_033007 22861 Hs.652273 NM_014922 ENSG00000091592 NLRP1 AIADK|CARD7|CIDED|CLR17.1|DEFCAP|DEFCAP-L/S|MSPC|NAC|NALP1|PP1044|SLEV1|VAMAS1 NLR family pyrin domain containing 1 protein-coding 312-497 chr7 111505919 111506153 + 2 NA intron (NM_032549, intron 2 of 5) AluJr4|SINE|Alu 56255 NM_001350960 83943 Hs.655722 NM_032549 ENSG00000184903 IMMP2L IMMP2L-IT1|IMP2|IMP2-LIKE inner mitochondrial membrane peptidase subunit 2 protein-coding 302-78 chr11 71305138 71305342 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -80444 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 268-4 chr1 55649446 55649624 + 2 NA Intergenic Intergenic 295428 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 554-193 chr7 64375199 64375623 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -58282 NR_029404 649395 Hs.728871 NR_029404 YWHAEP1 - tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon pseudogene 1 pseudo 451-95 chr18 1552581 1553025 + 2 NA Intergenic L1ME3|LINE|L1 -193174 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 249-32 chr1 234299370 234299547 + 2 NA intron (NM_173508, intron 3 of 7) L1MEg|LINE|L1 -7009 NR_039818 100616380 NR_039818 ENSG00000264377 MIR4671 - microRNA 4671 ncRNA 210-57 chr12 22383507 22383655 + 2 NA Intergenic L1M4|LINE|L1 -48867 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 245-330 chr7 89636969 89637120 + 2 NA Intergenic L1MA4A|LINE|L1 -482356 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 745-37 chr22 27405454 27405981 + 2 NA Intergenic Intergenic 95066 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 463-236 chr5 85205394 85205820 + 2 NA Intergenic Intergenic -820727 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 127-41 chr18 73656811 73656902 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 331915 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 388-5 chr1 56128569 56128896 + 2 NA Intergenic L2c|LINE|L2 183645 NR_147161 105378738 Hs.121473 NR_147161 ENSG00000233079 LINC01755 - long intergenic non-protein coding RNA 1755 ncRNA 194-193 chr6 151959899 151960038 + 2 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 150861 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 450-256 chr6 45759936 45760275 + 2 NA Intergenic Intergenic 177492 NR_045672 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 498-130 chr2 115369082 115369396 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 25424 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 611-33 chr12 90391205 90391671 + 2 NA Intergenic L2a|LINE|L2 98120 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 186-100 chr21 38278230 38278391 + 2 NA intron (NM_170737, intron 1 of 2) MIRb|SINE|MIR 5890 NM_170737 3772 Hs.411299 NM_002243 ENSG00000157551 KCNJ15 IRKK|KIR1.3|KIR4.2 potassium voltage-gated channel subfamily J member 15 protein-coding 360-372 chr5 98368559 98368784 + 2 NA Intergenic MIRb|SINE|MIR -207432 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 561-192 chr7 108845772 108846253 + 2 NA Intergenic Intergenic 38575 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 243-245 chr2 200273918 200274091 + 2 NA Intergenic (AAGTAA)n|Simple_repeat|Simple_repeat -31875 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 414-19 chr1 175274334 175274553 + 2 NA Intergenic PRIMA41-int|LTR|ERV1 -81456 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 373-287 chr4 62533344 62533632 + 2 NA Intergenic Intergenic -371723 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 632-88 chr4 133973565 133974156 + 2 NA Intergenic L1MB7|LINE|L1 227929 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 455-175 chr3 163116175 163116511 + 2 NA Intergenic MIRb|SINE|MIR 186958 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 307-131 chr14 36718182 36718379 + 2 NA intron (NM_001171170, intron 6 of 10) intron (NM_001171170, intron 6 of 10) 60712 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 376-438 chrX 64440387 64440637 + 2 NA Intergenic L2b|LINE|L2 -45060 NM_017677 55613 Hs.442892 NM_017677 ENSG00000102043 MTMR8 - myotubularin related protein 8 protein-coding 250-127 chr14 78003234 78003436 + 2 NA Intergenic L1MEf|LINE|L1 -167038 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 397-156 chr2 69263023 69263310 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 124061 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 707-44 chr19 24173086 24173657 + 2 NA Intergenic Intergenic -9924 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 480-271 chr7 34783205 34783551 + 2 NA intron (NM_207172, intron 3 of 8) THE1C|LTR|ERVL-MaLR -25106 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 320-229 chr18 68575105 68575289 + 2 NA Intergenic Intergenic 139911 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 379-65 chr11 97049856 97050178 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack 541592 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 276-327 chr4 38528246 38528429 + 2 NA Intergenic Intergenic -5157 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 188-156 chr4 123171980 123172134 + 2 NA intron (NM_001345856, intron 14 of 15) intron (NM_001345856, intron 14 of 15) -224738 NM_001258038 10252 Hs.744854 NM_005841 ENSG00000164056 SPRY1 hSPRY1 sprouty RTK signaling antagonist 1 protein-coding 279-128 chr16 73907975 73908138 + 2 NA Intergenic Intergenic 307465 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 254-331 chr5 156311513 156311700 + 2 NA Intergenic Intergenic -15151 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 328-630 chrX 58354652 58354892 + 2 NA Intergenic ALR/Alpha|Satellite|centr -444139 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 580-17 chr10 65255969 65256430 + 2 NA Intergenic L1MA4A|LINE|L1 -315226 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 451-255 chr9 101428014 101428391 + 2 NA intron (NM_000035, intron 4 of 8) MIRb|SINE|MIR 7572 NM_000035 229 Hs.530274 NM_000035 ENSG00000136872 ALDOB ALDB|ALDO2 aldolase, fructose-bisphosphate B protein-coding 384-179 chr2 118931005 118931313 + 2 NA Intergenic L1M4c|LINE|L1 -11010 NM_006770 8685 Hs.67726 NM_006770 ENSG00000019169 MARCO SCARA2|SR-A6 macrophage receptor with collagenous structure protein-coding 322-468 chr6 124915318 124915483 + 2 NA intron (NR_026876, intron 6 of 6) L1MB4|LINE|L1 -47145 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 319-238 chr2 63347356 63347576 + 2 NA intron (NR_148704, intron 13 of 18) MIR|SINE|MIR 90541 NR_122106 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 317-139 chr14 46109737 46109964 + 2 NA intron (NR_102702, intron 1 of 3) L1MA3|LINE|L1 45691 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 303-221 chr2 141818230 141818431 + 2 NA intron (NM_018557, intron 1 of 90) intron (NM_018557, intron 1 of 90) 313371 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 370-404 chr6 156587316 156587568 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -190413 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 321-537 chr7 110716862 110717039 + 2 NA intron (NM_001350963, intron 5 of 5) intron (NM_001350963, intron 5 of 5) -374056 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 241-191 chr2 104834005 104834222 + 2 NA intron (NR_037883, intron 1 of 3) intron (NR_037883, intron 1 of 3) 17363 NR_131235 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 315-416 chr6 52189466 52189758 + 2 NA 3' UTR (NM_002190, exon 3 of 3) 3' UTR (NM_002190, exon 3 of 3) 3237 NM_002190 3605 Hs.41724 NM_002190 ENSG00000112115 IL17A CTLA-8|CTLA8|IL-17|IL-17A|IL17 interleukin 17A protein-coding 554-217 chr9 112998481 112998954 + 2 NA 5' UTR (NM_001101338, exon 5 of 5) 5' UTR (NM_001101338, exon 5 of 5) 13475 NM_001101338 169834 Hs.192877 NM_001101338 ENSG00000285447 ZNF883 - zinc finger protein 883 protein-coding 373-341 chr5 155460092 155460319 + 2 NA Intergenic Intergenic 446450 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 668-11 chr11 15565586 15566222 + 2 NA Intergenic Intergenic -77981 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 231-353 chr8 87771992 87772147 + 2 NA Intergenic Intergenic 101946 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 341-27 chr1 110815072 110815354 + 2 NA Intergenic L2c|LINE|L2 -55986 NM_001040033 963 Hs.443057 NM_000560 ENSG00000143119 CD53 MOX44|TSPAN25 CD53 molecule protein-coding 235-262 chr4 94559156 94559361 + 2 NA intron (NM_001011516, intron 3 of 9) intron (NM_001011516, intron 3 of 9) 107316 NM_001256428 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 339-626 chrX 79054785 79055094 + 2 NA Intergenic L1M4|LINE|L1 109548 NM_014499 27334 Hs.296433 NM_014499 ENSG00000078589 P2RY10 LYPSR2|P2Y10 P2Y receptor family member 10 protein-coding 315-70 chr10 113511042 113511320 + 2 NA Intergenic L1MB7|LINE|L1 -39650 NM_001177660 3026 Hs.422542 NM_004132 ENSG00000148702 HABP2 FSAP|HABP|HGFAL|NMTC5|PHBP hyaluronan binding protein 2 protein-coding 508-148 chr3 70643859 70644278 + 2 NA Intergenic Intergenic -331430 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 358-186 chr19 58224142 58224349 + 2 NA Intergenic AluY|SINE|Alu -4436 NM_001320782 27300 Hs.438994 NM_014480 ENSG00000198131 ZNF544 - zinc finger protein 544 protein-coding 229-141 chr17 4351780 4351930 + 2 NA intron (NM_003342, intron 1 of 5) intron (NM_003342, intron 1 of 5) 14819 NM_003342 7326 Hs.741319 NM_003342 ENSG00000132388 UBE2G1 E217K|UBC7|UBE2G ubiquitin conjugating enzyme E2 G1 protein-coding 210-9 chr1 90054996 90055176 + 2 NA Intergenic MIR|SINE|MIR 59976 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 448-185 chr4 83813552 83813823 + 2 NA Intergenic Intergenic 277579 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 527-203 chr5 22522441 22522906 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) -308823 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 320-586 chr9 24927161 24927440 + 2 NA Intergenic Intergenic -381403 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 235-254 chr4 62717808 62717983 + 2 NA Intergenic Intergenic -556130 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 256-82 chr12 18491374 18491590 + 2 NA exon (NM_004570, exon 19 of 32) exon (NM_004570, exon 19 of 32) 229942 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 590-87 chr2 216059692 216060142 + 2 NA intron (NM_018441, intron 3 of 7) L1MB7|LINE|L1 21892 NM_018441 55825 Hs.281680 NM_018441 ENSG00000115425 PECR DCRRP|HPDHASE|HSA250303|PVIARL|SDR29C1|TERP peroxisomal trans-2-enoyl-CoA reductase protein-coding 258-63 chr11 20534363 20534539 + 2 NA Intergenic Intergenic -64949 NM_001318369 9152 Hs.136557 NM_004211 ENSG00000165970 SLC6A5 GLYT-2|GLYT2|HKPX3|NET1 solute carrier family 6 member 5 protein-coding 366-31 chr1 216965977 216966270 + 2 NA intron (NM_001134285, intron 1 of 8) MER115|DNA|hAT-Tip100 -26450 NM_001243512 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 227-399 chr9 88161989 88162198 + 2 NA Intergenic L1M7|LINE|L1 -23612 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 395-281 chr5 153560167 153560533 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 68178 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 351-442 chr7 35474839 35475098 + 2 NA Intergenic L1M4|LINE|L1 161113 NR_038864 401324 Hs.377034 NR_038864 LOC401324 - uncharacterized LOC401324 ncRNA 208-269 chr8 122410878 122411073 + 2 NA Intergenic LTR78|LTR|ERV1 157669 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 233-324 chr6 15527054 15527221 + 2 NA intron (NR_036448, intron 9 of 9) L1MEd|LINE|L1 135891 NR_036448 84062 Hs.571148 NM_032122 ENSG00000047579 DTNBP1 BLOC1S8|DBND|HPS7|My031|SDY dystrobrevin binding protein 1 protein-coding 298-520 chrX 108375148 108375423 + 2 NA intron (NM_001287758, intron 2 of 45) intron (NM_001287758, intron 2 of 45) 63137 NM_033641 1288 Hs.145586 NM_001847 ENSG00000197565 COL4A6 CXDELq22.3|DELXq22.3|DFNX6 collagen type IV alpha 6 chain protein-coding 171-96 chr4 122272884 122273008 + 2 NA intron (NM_015312, intron 46 of 83) MER104|DNA|TcMar-Tc2 102343 NM_015312 84162 Hs.408142 NM_015312 ENSG00000138688 KIAA1109 ALKKUCS|FSA|Tweek KIAA1109 protein-coding 315-276 chr20 41943110 41943341 + 2 NA Intergenic Intergenic -324848 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 159 chr1 59913471 59913599 + 2 NA intron (NM_000775, intron 2 of 8) L2a|LINE|L2 13238 NM_000775 1573 Hs.152096 NM_000775 ENSG00000134716 CYP2J2 CPJ2|CYPIIJ2 cytochrome P450 family 2 subfamily J member 2 protein-coding 298-30 chr1 237479695 237479965 + 2 NA intron (NM_001035, intron 17 of 104) MIR|SINE|MIR 8711 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 617-47 chr16 31835194 31835732 + 2 NA Intergenic L1P4|LINE|L1 -26610 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 318-98 chr11 31445349 31445640 + 2 NA intron (NM_001304274, intron 4 of 5) intron (NM_001304274, intron 4 of 5) 64128 NM_001304274 196294 Hs.502223 NM_144981 ENSG00000148950 IMMP1L IMMP1|IMP1|IMP1-LIKE inner mitochondrial membrane peptidase subunit 1 protein-coding 250-182 chr19 8827362 8827567 + 2 NA intron (NM_144693, intron 2 of 9) L2a|LINE|L2 4840 NM_144693 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 603-129 chr5 25284154 25284530 + 2 NA intron (NR_136209, intron 1 of 3) intron (NR_136209, intron 1 of 3) 93389 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 395-83 chr13 65342155 65342385 + 2 NA Intergenic Intergenic -523777 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 169-151 chr9 92393869 92393967 + 2 NA intron (NM_024416, intron 3 of 6) L1MC4a|LINE|L1 10660 NM_014057 4969 Hs.109439 NM_014057 ENSG00000106809 OGN OG|OIF|SLRR3A osteoglycin protein-coding 121-66 chr8 89248858 89248923 + 2 NA Intergenic L1MA4A|LINE|L1 508821 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 189-82 chr19 45027337 45027437 + 2 NA intron (NM_006509, intron 6 of 10) MLT1K|LTR|ERVL-MaLR -11658 NR_103529 11129 Hs.466917 NM_007056 ENSG00000104859 CLASRP CLASP|SFRS16|SWAP2 CLK4 associating serine/arginine rich protein protein-coding 288-402 chr7 41341817 41342070 + 2 NA Intergenic AluJr|SINE|Alu 240339 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 325-204 chr16 78065394 78065658 + 2 NA Intergenic LTR19A|LTR|ERV1 -34128 NM_016373 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 359-43 chr10 18330629 18330842 + 2 NA intron (NM_000724, intron 1 of 12) AluSx1|SINE|Alu -9974 NM_201590 783 Hs.59093 NM_000724 ENSG00000165995 CACNB2 CACNLB2|CAVB2|MYSB calcium voltage-gated channel auxiliary subunit beta 2 protein-coding 297-502 chr8 144031852 144032132 + 2 NA intron (NM_198572, intron 1 of 4) AluJb|SINE|Alu -17406 NR_158554 392275 NR_158554 SMPD5 MA-nSMase sphingomyelin phosphodiesterase 5 pseudo 426-112 chr18 13358316 13358625 + 2 NA intron (NM_181482, intron 2 of 5) L1MC5|LINE|L1 69064 NR_040031 100288122 Hs.646264 NR_040031 ENSG00000267690 LDLRAD4-AS1 - LDLRAD4 antisense RNA 1 ncRNA 882-12 chr14 35853253 35854016 + 2 NA intron (NM_032352, intron 4 of 9) AluJo|SINE|Alu 27296 NM_032352 84312 Hs.525299 NM_032352 ENSG00000100916 BRMS1L BRMS1 BRMS1 like transcriptional repressor protein-coding 794-50 chr8 133172732 133173252 + 2 NA Intergenic AluJr|SINE|Alu -18047 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 414-331 chr8 100306792 100307076 + 2 NA intron (NM_001280539, intron 2 of 10) intron (NM_001280539, intron 2 of 10) 2441 NM_001353838 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 285-317 chr4 178420641 178420877 + 2 NA Intergenic AluSz|SINE|Alu -512823 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 233-97 chr14 66192899 66193111 + 2 NA Intergenic L1MEd|LINE|L1 -293366 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 238-383 chr8 82926894 82927084 + 2 NA intron (NR_134295, intron 2 of 3) L1M5|LINE|L1 14885 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 410-253 chr5 135684830 135685041 + 2 NA intron (NM_001349335, intron 3 of 10) L1MC5a|LINE|L1 -31000 NR_027127 340074 Hs.434633 NR_027127 ENSG00000251045 SLC25A48-AS1 LINC01959 SLC25A48 antisense RNA 1 ncRNA 524-126 chr2 177583545 177583907 + 2 NA Intergenic Intergenic -30930 NM_152517 150737 Hs.447659 NM_152517 ENSG00000196659 TTC30B IFT70|IFT70B|fleer tetratricopeptide repeat domain 30B protein-coding 486-59 chr12 38146147 38146487 + 2 NA Intergenic AluSx1|SINE|Alu -170457 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 182-17 chr10 4647033 4647162 + 2 NA Intergenic Intergenic -9059 NR_015425 338588 Hs.121365 NR_015425 LINC00705 - long intergenic non-protein coding RNA 705 ncRNA 214-339 chr8 130952781 130952943 + 2 NA intron (NM_001115, intron 2 of 17) intron (NM_001115, intron 2 of 17) 88047 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 261-381 chr8 99465158 99465339 + 2 NA intron (NM_017890, intron 23 of 61) intron (NM_017890, intron 23 of 61) 71482 NR_030329 693184 NR_030329 ENSG00000207804 MIR599 MIRN599|hsa-mir-599 microRNA 599 ncRNA 283-408 chr7 9025564 9025810 + 2 NA Intergenic Intergenic 592078 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 767-49 chr7 29994675 29995259 + 2 NA Intergenic L1MEc|LINE|L1 -4678 NM_001145514 9805 Hs.520740 NM_014766 ENSG00000136193 SCRN1 SES1 secernin 1 protein-coding 342-503 chr8 28340007 28340325 + 2 NA intron (NM_001284244, intron 2 of 2) intron (NM_001284244, intron 2 of 2) 1519 NM_001284244 5368 Hs.88218 NM_006228 ENSG00000168081 PNOC N/OFQ|NOP|OFQ|PPNOC|ppN/OFQ prepronociceptin protein-coding 312-3 chr1 28752011 28752236 + 2 NA intron (NM_001173128, intron 5 of 5) intron (NM_001173128, intron 5 of 5) 15183 NM_016258 51441 Hs.532286 NM_016258 ENSG00000198492 YTHDF2 CAHL|HGRG8|NY-REN-2 YTH N6-methyladenosine RNA binding protein 2 protein-coding 489-273 chrX 62668051 62668527 + 2 NA Intergenic ALR/Alpha|Satellite|centr 683043 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 219-128 chr16 82895942 82896151 + 2 NA intron (NM_001220490, intron 2 of 12) L2a|LINE|L2 94252 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 227-291 chr5 93656355 93656527 + 2 NA intron (NM_032042, intron 10 of 10) intron (NM_032042, intron 10 of 10) -35653 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 157-8 chr1 110570852 110570946 + 2 NA Intergenic Intergenic 35459 NM_004974 3737 Hs.248139 NM_004974 ENSG00000177301 KCNA2 EIEE32|HBK5|HK4|HUKIV|KV1.2|MK2|NGK1|RBK2 potassium voltage-gated channel subfamily A member 2 protein-coding 265-343 chr6 137674386 137674536 + 2 NA TTS (NR_125867) TTS (NR_125867) 8815 NR_125867 102723649 Hs.129235 NR_125867 LOC102723649 - uncharacterized LOC102723649 ncRNA 307-314 chr3 144953515 144953761 + 2 NA Intergenic Intergenic 980557 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 284-314 chr5 30564751 30564953 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -628834 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 371 chr1 34510568 34510826 + 2 NA Intergenic L1ME1|LINE|L1 158997 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 435-91 chr16 25708263 25708618 + 2 NA intron (NM_006040, intron 1 of 1) intron (NM_006040, intron 1 of 1) 16481 NM_006040 9951 Hs.655275 NM_006040 ENSG00000182601 HS3ST4 3-OST-4|30ST4|3OST4|h3-OST-4 heparan sulfate-glucosamine 3-sulfotransferase 4 protein-coding 275-85 chr12 43245789 43246020 + 2 NA Intergenic Intergenic 90589 NR_146866 105369740 Hs.577746 NR_146866 ENSG00000258331 LINC02461 - long intergenic non-protein coding RNA 2461 ncRNA 241-342 chr6 140423692 140423862 + 2 NA Intergenic L1MA1|LINE|L1 218525 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 361-167 chr17 42339618 42339906 + 2 NA intron (NM_001369512, intron 4 of 23) intron (NM_001369512, intron 4 of 23) 48680 NM_213662 6774 Hs.463059 NM_003150 ENSG00000168610 STAT3 ADMIO|ADMIO1|APRF|HIES signal transducer and activator of transcription 3 protein-coding 318-241 chr19 58166828 58167093 + 2 NA Intergenic Intergenic -16029 NM_001278734 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 259-397 chr8 84174890 84175125 + 2 NA Intergenic Intergenic -7780 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 322-32 chr1 178209078 178209315 + 2 NA intron (NM_170692, intron 1 of 17) HAL1|LINE|L1 115092 NM_170692 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 294-299 chr3 89590908 89591176 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 483421 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 443-25 chr1 207623737 207624071 + 2 NA intron (NM_000573, intron 37 of 38) intron (NM_000573, intron 37 of 38) -21229 NM_175710 1379 Hs.628568 NM_175710 ENSG00000197721 CR1L - complement C3b/C4b receptor 1 like protein-coding 275-237 chr3 399731 399988 + 2 NA intron (NM_001253388, intron 23 of 24) intron (NM_001253388, intron 23 of 24) -14064 NR_110739 101927193 Hs.677744 NR_110739 ENSG00000234661 CHL1-AS1 - CHL1 antisense RNA 1 ncRNA 480-71 chr14 52346758 52347194 + 2 NA Intergenic L1MB5|LINE|L1 32664 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 383-408 chr8 144587264 144587486 + 2 NA intron (NM_025251, intron 1 of 10) L1MEg|LINE|L1 18320 NM_025251 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 499-197 chr5 20582262 20582635 + 2 NA Intergenic L1MB3|LINE|L1 -6735 NM_001349556 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 215-237 chr4 130248951 130249123 + 2 NA Intergenic Intergenic -127324 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 158-117 chr8 121168619 121168721 + 2 NA Intergenic L3|LINE|CR1 -356624 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 287-391 chr7 146422214 146422494 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -351917 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 322-369 chr4 61561597 61561907 + 2 NA intron (NM_001371343, intron 4 of 23) intron (NM_001371343, intron 4 of 23) 359580 NM_001371342 340-70 chr11 27806013 27806222 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -84087 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 514-236 chr5 125814586 125815053 + 2 NA Intergenic Intergenic 321558 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 448-83 chr14 62180838 62181126 + 2 NA Intergenic MIRc|SINE|MIR -41009 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 238-414 chr9 71116395 71116568 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 5140 NM_001366145 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 313-325 chr3 10857930 10858230 + 2 NA intron (NM_014229, intron 5 of 13) MER20B|DNA|hAT-Charlie 41852 NM_014229 6538 Hs.655078 NM_014229 ENSG00000132164 SLC6A11 GAT-3|GAT3|GAT4 solute carrier family 6 member 11 protein-coding 259-369 chr7 47758713 47758964 + 2 NA Intergenic Intergenic -2638 NR_038407 84847 Hs.488236 NR_038407 ENSG00000146666 LINC00525 - long intergenic non-protein coding RNA 525 ncRNA 428-275 chr7 62607239 62607642 + 2 NA Intergenic ALR/Alpha|Satellite|centr 696616 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 231-338 chr7 99942431 99942589 + 2 NA Intergenic L1MEc|LINE|L1 -12890 NM_181538 349149 Hs.647524 NM_181538 ENSG00000176402 GJC3 CX29|CX30.2|CX31.3|GJE1 gap junction protein gamma 3 protein-coding 240-156 chr15 61862894 61863053 + 2 NA intron (NM_020821, intron 82 of 84) intron (NM_020821, intron 82 of 84) 133055 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 297-512 chr9 92930003 92930214 + 2 NA Intergenic Intergenic -17415 NM_001083536 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 334-282 chr2 132916387 132916679 + 2 NA intron (NR_135572, intron 1 of 1) intron (NR_135572, intron 1 of 1) 976 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 393-63 chr11 114115395 114115768 + 2 NA intron (NM_006006, intron 2 of 6) intron (NM_006006, intron 2 of 6) 52370 NM_001354752 7704 Hs.591945 NM_006006 ENSG00000109906 ZBTB16 PLZF|ZNF145 zinc finger and BTB domain containing 16 protein-coding 246-405 chr8 91778290 91778493 + 2 NA Intergenic L1MC4|LINE|L1 239289 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 256-395 chr7 88600415 88600614 + 2 NA Intergenic Intergenic -159186 NM_181646 219578 Hs.684410 NM_181646 ENSG00000182348 ZNF804B - zinc finger protein 804B protein-coding 375-384 chr7 63958907 63959206 + 2 NA Intergenic AluSp|SINE|Alu -39750 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 344-238 chr2 71723481 71723689 + 2 NA Intergenic HAL1|LINE|L1 256886 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 252-305 chr4 114845849 114846049 + 2 NA exon (NM_022569, exon 10 of 14) exon (NM_022569, exon 10 of 14) 189190 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 264-267 chr3 29224940 29225149 + 2 NA Intergenic Intergenic 55895 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 476-263 chr8 74550062 74550450 + 2 NA Intergenic MIR3|SINE|MIR -1647 NR_049871 100847091 NR_049871 ENSG00000283505 MIR5681B - microRNA 5681b ncRNA 138-41 chr2 78900730 78900818 + 2 NA Intergenic Intergenic -124928 NM_001270040 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 120-47 chr7 144054313 144054377 + 2 NA Intergenic Intergenic 3943 NM_012365 393046 Hs.553793 NM_012365 ENSG00000221836 OR2A5 OR2A11P|OR2A26|OR2A8|OR7-138|OR7-141 olfactory receptor family 2 subfamily A member 5 protein-coding 630-31 chr14 60592039 60592528 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -46933 NR_126480 104548971 NR_126480 SALRNA1 SAL-RNA1|XLOC_023166 senescence associated long non-coding RNA 1 ncRNA 800-44 chr3 159933737 159934418 + 2 NA intron (NR_108088, intron 9 of 9) THE1B-int|LTR|ERVL-MaLR -54758 NM_000882 3592 Hs.673 NM_000882 ENSG00000168811 IL12A CLMF|IL-12A|NFSK|NKSF1|P35 interleukin 12A protein-coding 303-399 chr6 88835482 88835727 + 2 NA intron (NM_003800, intron 11 of 15) intron (NM_003800, intron 11 of 15) 128014 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 293-5 chr1 58717795 58717995 + 2 NA Intergenic MIRc|SINE|MIR -17833 NM_001085487 114803 Hs.744921 NM_001085487 ENSG00000162601 MYSM1 2A-DUB|2ADUB|BMFS4 Myb like, SWIRM and MPN domains 1 protein-coding 679-90 chr5 51644331 51644888 + 2 NA Intergenic Intergenic 261161 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 195-225 chr7 41895265 41895418 + 2 NA Intergenic Intergenic -192251 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 593-62 chr18 2175906 2176291 + 2 NA Intergenic Intergenic 395407 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 580-53 chr15 47737274 47737651 + 2 NA intron (NM_153618, intron 1 of 18) intron (NM_153618, intron 1 of 18) 18973 NM_153619 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 228-76 chr12 98270740 98270934 + 2 NA Intergenic L1MA4|LINE|L1 186308 NR_033801 121456 Hs.620643 NR_033801 ENSG00000227825 SLC9A7P1 - solute carrier family 9 member 7 pseudogene 1 pseudo 400-281 chr5 46156168 46156529 + 2 NA Intergenic L1PA5|LINE|L1 -459968 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 484-278 chr8 135085240 135085576 + 2 NA Intergenic L1MCc|LINE|L1 -148723 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 204-243 chr5 167101353 167101507 + 2 NA intron (NM_001122679, intron 1 of 29) intron (NM_001122679, intron 1 of 29) 28188 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 407-117 chr18 6013771 6014024 + 2 NA intron (NR_158609, intron 15 of 17) intron (NR_158609, intron 15 of 17) -117943 NM_001080209 645369 NM_001080209 ENSG00000206432 TMEM200C TTMA transmembrane protein 200C protein-coding 339-484 chr5 179462993 179463320 + 2 NA Intergenic L1MB8|LINE|L1 53555 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 267-263 chr3 116842591 116842742 + 2 NA Intergenic Intergenic 7701 NR_039649 100616485 NR_039649 ENSG00000265433 MIR4447 - microRNA 4447 ncRNA 271-115 chr13 75106837 75107044 + 2 NA Intergenic L1MD|LINE|L1 133441 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 323-403 chr5 21096766 21097064 + 2 NA Intergenic Intergenic -362565 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 410-227 chr4 159830002 159830251 + 2 NA Intergenic Intergenic -52342 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 280-125 chr14 82298399 82298594 + 2 NA Intergenic Intergenic -344136 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 221-67 chr12 115780932 115781110 + 2 NA Intergenic L1MC|LINE|L1 367633 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 456-343 chr9 81121947 81122348 + 2 NA Intergenic MER52A|LTR|ERV1 567388 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 414-52 chr11 100437871 100438167 + 2 NA Intergenic MIR|SINE|MIR -249269 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 189-209 chr8 89038592 89038719 + 2 NA Intergenic Intergenic -711172 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 256-212 chr2 126083895 126084082 + 2 NA Intergenic L1MC1|LINE|L1 33997 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 328-623 chrX 29130315 29130634 + 2 NA intron (NM_014271, intron 2 of 10) intron (NM_014271, intron 2 of 10) -443804 NR_049877 100847047 NR_049877 ENSG00000264090 MIR4666B - microRNA 4666b ncRNA 353-445 chr6 51252788 51253054 + 2 NA Intergenic L1MC4a|LINE|L1 -368949 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 378-147 chr15 33112790 33113141 + 2 NA intron (NM_001277313, intron 4 of 20) intron (NM_001277313, intron 4 of 20) -44791 NM_001103184 342184 Hs.657649 NM_198500 ENSG00000248905 FMN1 FMN|LD formin 1 protein-coding 347-24 chr1 178265746 178266049 + 2 NA intron (NM_170692, intron 1 of 17) L1ME3A|LINE|L1 -75554 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 403-296 chr8 21648611 21648983 + 2 NA Intergenic L1ME3|LINE|L1 140078 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 358-317 chr3 190080979 190081259 + 2 NA intron (NM_001134418, intron 1 of 14) MIRc|SINE|MIR 39778 NM_018192 55214 Hs.374191 NM_018192 ENSG00000090530 P3H2 LEPREL1|MCVD|MLAT4 prolyl 3-hydroxylase 2 protein-coding 260-195 chr19 56424602 56424828 + 2 NA 3' UTR (NM_001159861, exon 5 of 5) 3' UTR (NM_001159861, exon 5 of 5) 20383 NM_001159861 147949 Hs.146854 NM_152478 ENSG00000198440 ZNF583 - zinc finger protein 583 protein-coding 318-317 chr20 38844134 38844384 + 2 NA intron (NM_015568, intron 2 of 10) Charlie1a|DNA|hAT-Charlie 38562 NM_001172735 26051 Hs.45719 NM_015568 ENSG00000101445 PPP1R16B ANKRD4|TIMAP protein phosphatase 1 regulatory subunit 16B protein-coding 242-34 chr10 51935508 51935740 + 2 NA intron (NM_001098512, intron 5 of 17) L2|LINE|L2 -236029 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 290-150 chr15 101510898 101511081 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -21005 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 478-51 chr11 127974136 127974486 + 2 NA Intergenic L1MDa|LINE|L1 -234455 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 323-542 chr8 72935851 72936071 + 2 NA exon (NM_004770, exon 3 of 3) exon (NM_004770, exon 3 of 3) -72903 NM_017489 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 441-150 chr3 7056418 7056781 + 2 NA intron (NM_000844, intron 1 of 9) intron (NM_000844, intron 1 of 9) -162582 NR_131906 105376946 Hs.616038 NR_131906 ENSG00000237665 GRM7-AS2 - GRM7 antisense RNA 2 ncRNA 363-30 chr1 233432232 233432564 + 2 NA Intergenic L1PB4|LINE|L1 104674 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 442-96 chr16 31764361 31764796 + 2 NA Intergenic HERVK22-int|LTR|ERVK 44275 NM_174980 317702 Hs.257746 NM_174980 VN1R3 FKSG46|V1RL3|V1RL3p vomeronasal 1 receptor 3 (gene/pseudogene) protein-coding 297-150 chr15 86451055 86451284 + 2 NA intron (NM_152336, intron 18 of 24) intron (NM_152336, intron 18 of 24) -134201 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 230-187 chr2 163290079 163290266 + 2 NA Intergenic Intergenic 445836 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 434-265 chr7 78925288 78925622 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -83533 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 202-39 chr11 10569440 10569586 + 2 NA promoter-TSS (NM_006691) promoter-TSS (NM_006691) -848 NM_006691 10894 Hs.655332 NM_006691 ENSG00000133800 LYVE1 CRSBP-1|HAR|LYVE-1|XLKD1 lymphatic vessel endothelial hyaluronan receptor 1 protein-coding 578-178 chr8 111248212 111248529 + 2 NA Intergenic Intergenic -12167 NR_125418 101927487 Hs.630004 NR_125418 ENSG00000253103 LINC01609 - long intergenic non-protein coding RNA 1609 ncRNA 447-294 chr9 108326501 108326795 + 2 NA Intergenic L1MA1|LINE|L1 529338 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 533-6 chr1 79200519 79200980 + 2 NA Intergenic L1M5|LINE|L1 -194019 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 234-297 chr5 6267351 6267511 + 2 NA Intergenic Intergenic 69861 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 280-195 chr2 73492308 73492473 + 2 NA intron (NM_015120, intron 10 of 22) MIR|SINE|MIR 35287 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 194-157 chr5 10022225 10022335 + 2 NA Intergenic L1M3f|LINE|L1 -118456 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 298-72 chr11 60317227 60317439 + 2 NA Intergenic Intergenic -17549 NM_139249 245802 Hs.662211 NM_139249 ENSG00000166926 MS4A6E - membrane spanning 4-domains A6E protein-coding 286-474 chr9 33908221 33908388 + 2 NA intron (NM_017811, intron 3 of 4) MLT1K|LTR|ERVL-MaLR 26060 NM_001282530 55833 Hs.493739 NM_018449 ENSG00000137073 UBAP2 UBAP-2 ubiquitin associated protein 2 protein-coding 412-298 chr7 7368161 7368498 + 2 NA intron (NM_001037763, intron 33 of 34) L2c|LINE|L2 113175 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 380-341 chr6 64114277 64114641 + 2 NA intron (NM_001292009, intron 31 of 43) L1M2a|LINE|L1 307623 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 314-550 chr7 146768755 146768927 + 2 NA Intergenic Intergenic -5430 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 354-408 chr6 131057481 131057830 + 2 NA intron (NM_001135554, intron 1 of 14) L3b|LINE|CR1 5590 NM_001431 2037 Hs.486470 NM_001431 ENSG00000079819 EPB41L2 4.1-G|4.1G erythrocyte membrane protein band 4.1 like 2 protein-coding 375-86 chr11 112688920 112689198 + 2 NA Intergenic Intergenic -133257 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 268-234 chr3 6051930 6052144 + 2 NA Intergenic L1MA8|LINE|L1 753412 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 347-45 chr10 31560157 31560445 + 2 NA Intergenic L1MA7|LINE|L1 -160546 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 240-130 chr13 106405464 106405699 + 2 NA Intergenic Intergenic 29017 NR_034119 728192 Hs.559194 NR_034119 LINC00460 - long intergenic non-protein coding RNA 460 ncRNA 369-273 chr3 117363840 117364047 + 2 NA Intergenic L1PA8A|LINE|L1 326982 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 632-28 chr15 26285099 26285560 + 2 NA Intergenic L1MA9|LINE|L1 169516 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 132-35 chr18 10233882 10234010 + 2 NA Intergenic Intergenic 180424 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 343-129 chr13 108076925 108077262 + 2 NA Intergenic L1MCa|LINE|L1 137689 NM_002312 3981 Hs.166091 NM_002312 ENSG00000174405 LIG4 LIG4S DNA ligase 4 protein-coding 187-12 chr1 87192887 87193017 + 2 NA Intergenic Intergenic -19717 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 337-57 chr10 77439150 77439395 + 2 NA intron (NM_001271519, intron 1 of 28) L1ME2z|LINE|L1 88400 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 546-252 chr9 25375107 25375416 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR 303597 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 287-234 chr21 27623694 27623901 + 2 NA Intergenic MLT2B1|LTR|ERVL -98582 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 339-183 chr15 93920914 93921100 + 2 NA intron (NR_120320, intron 8 of 8) MLT2B1|LTR|ERVL 20306 NR_120323 101927129 Hs.652658 NR_120322 ENSG00000258785 LINC01580 - long intergenic non-protein coding RNA 1580 ncRNA 235-130 chr16 87394298 87394500 + 2 NA intron (NM_022818, intron 1 of 3) intron (NM_022818, intron 1 of 3) 2063 NM_022818 81631 Hs.356061 NM_022818 ENSG00000140941 MAP1LC3B ATG8F|LC3B|MAP1A/1BLC3|MAP1LC3B-a microtubule associated protein 1 light chain 3 beta protein-coding 404-334 chr8 137121262 137121623 + 2 NA Intergenic Intergenic 292146 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 343-205 chr18 61067410 61067722 + 2 NA Intergenic Intergenic -265864 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 139-63 chr4 71817582 71817695 + 2 NA Intergenic Intergenic -12118 NM_001204306 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 193-3 chr1 37187944 37188131 + 2 NA Intergenic L1MC5a|LINE|L1 26474 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 272-369 chr5 164906227 164906458 + 2 NA Intergenic Intergenic 436063 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 274-27 chr1 236160270 236160538 + 2 NA intron (NM_003272, intron 1 of 6) intron (NM_003272, intron 1 of 6) 17865 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 375-339 chr5 151860443 151860645 + 2 NA intron (NM_000171, intron 3 of 8) intron (NM_000171, intron 3 of 8) 64307 NM_001146040 2741 Hs.121490 NM_000171 ENSG00000145888 GLRA1 HKPX1|STHE glycine receptor alpha 1 protein-coding 450-176 chr21 31842949 31843314 + 2 NA Intergenic L1M4|LINE|L1 -29889 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 262-213 chr2 104688334 104688508 + 2 NA Intergenic Intergenic 69298 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 557-36 chr11 112414585 112414979 + 2 NA Intergenic HAL1|LINE|L1 -67450 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 251-57 chr11 114672441 114672674 + 2 NA Intergenic L1MA9|LINE|L1 -5970 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 142-38 chr2 71780017 71780088 + 2 NA Intergenic (CT)n|Simple_repeat|Simple_repeat 313353 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 427-251 chr7 132226378 132226654 + 2 NA intron (NM_020911, intron 7 of 31) intron (NM_020911, intron 7 of 31) -34345 NR_134565 101928807 Hs.552131 NR_134565 LOC101928807 - uncharacterized LOC101928807 ncRNA 308-257 chr2 206509133 206509354 + 2 NA intron (NM_003812, intron 3 of 25) L1M7|LINE|L1 65711 NM_003812 8745 Hs.370287 NM_003812 ENSG00000114948 ADAM23 MDC-3|MDC3 ADAM metallopeptidase domain 23 protein-coding 550-100 chr18 76554896 76555353 + 2 NA intron (NR_015417, intron 2 of 2) L1MEh|LINE|L1 26469 NR_015417 284276 Hs.390287 NR_015417 ENSG00000266256 LINC00908 - long intergenic non-protein coding RNA 908 ncRNA 158-32 chr14 103227822 103227928 + 2 NA Intergenic L1MA4A|LINE|L1 -38847 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 453-124 chr2 126599594 126599966 + 2 NA Intergenic L1MB4|LINE|L1 -56155 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 184-26 chr10 58275846 58276002 + 2 NA intron (NM_018464, intron 1 of 2) intron (NM_018464, intron 1 of 2) 6762 NM_018464 55847 Hs.370102 NM_018464 ENSG00000122873 CISD1 C10orf70|MDS029|ZCD1|mitoNEET CDGSH iron sulfur domain 1 protein-coding 290-144 chr15 54294131 54294294 + 2 NA intron (NM_001329919, intron 10 of 31) intron (NM_001329919, intron 10 of 31) 281564 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 528-32 chr10 39109656 39110014 + 2 NA Intergenic HERVKC4-int|LTR|ERVK 413239 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 215-63 chr12 14822613 14822773 + 2 NA intron (NM_175874, intron 1 of 1) intron (NM_175874, intron 1 of 1) -8511 NM_001013698 440087 Hs.220931 NM_001013698 ENSG00000179256 SMCO3 C12orf69 single-pass membrane protein with coiled-coil domains 3 protein-coding 710-67 chr3 98536665 98537084 + 2 NA Intergenic Intergenic 4896 NM_005290 2838 Hs.162987 NM_005290 ENSG00000154165 GPR15 BOB G protein-coupled receptor 15 protein-coding 279-183 chr2 80918037 80918245 + 2 NA Intergenic L1MA2|LINE|L1 548805 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 452-27 chr10 37812328 37812710 + 2 NA intron (NM_001352493, intron 5 of 6) Tigger2|DNA|TcMar-Tigger -17344 NR_051997 100419868 Hs.741719 NR_051997 ZNF33BP1 - zinc finger protein 33B pseudogene 1 pseudo 216-6 chr1 66889592 66889788 + 2 NA intron (NM_024763, intron 4 of 16) intron (NM_024763, intron 4 of 16) 35166 NM_024763 79819 Hs.49421 NM_024763 ENSG00000152763 WDR78 DIC4 WD repeat domain 78 protein-coding 600-63 chr2 71685687 71686266 + 2 NA intron (NM_001130985, intron 54 of 54) intron (NM_001130985, intron 54 of 54) 219277 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 314-439 chr4 128362888 128363164 + 2 NA Intergenic L2b|LINE|L2 -64990 NR_125882 100507487 Hs.549644 NR_125882 ENSG00000251432 LINC02615 - long intergenic non-protein coding RNA 2615 ncRNA 645-115 chr7 83925605 83926087 + 2 NA Intergenic L1MB8|LINE|L1 268943 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 112-3 chr1 244328403 244328480 + 2 NA Intergenic L1ME1|LINE|L1 -24194 NM_001012970 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 293-44 chr10 83656041 83656208 + 2 NA Intergenic AluY|SINE|Alu 20965 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 331-273 chr2 95225606 95225833 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -48730 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 256-148 chr16 9708485 9708726 + 2 NA Intergenic Intergenic -253100 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 375-183 chr18 64252526 64252763 + 2 NA intron (NR_033881, intron 3 of 9) MLT1C|LTR|ERVL-MaLR 7411 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 258-266 chr3 112492882 112493136 + 2 NA intron (NM_001085357, intron 1 of 3) intron (NM_001085357, intron 1 of 3) 6463 NM_181780 151888 Hs.445162 NM_181780 ENSG00000186265 BTLA BTLA1|CD272 B and T lymphocyte associated protein-coding 466-122 chr2 40042793 40043123 + 2 NA intron (NR_038441, intron 2 of 4) MamGypLTR1c|LTR|Gypsy 125324 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 259-156 chr17 6032132 6032380 + 2 NA Intergenic Intergenic -38358 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 400-342 chr8 84917639 84917861 + 2 NA intron (NM_001287244, intron 7 of 7) intron (NM_001287244, intron 7 of 7) -189488 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 580-192 chr7 125216496 125217020 + 2 NA intron (NR_110188, intron 3 of 8) L1PB4|LINE|L1 32189 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 350-313 chr3 74035240 74035500 + 2 NA Intergenic LTR37A|LTR|ERV1 226126 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 551-190 chr7 45506928 45507324 + 2 NA Intergenic Intergenic -67014 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 376-265 chr3 182639651 182640003 + 2 NA Intergenic Intergenic -132703 NR_134941 105374244 Hs.130176 NR_134941 ENSG00000244247 LINC01995 - long intergenic non-protein coding RNA 1995 ncRNA 491-277 chr9 91571715 91572059 + 2 NA Intergenic Intergenic -64364 NR_037472 100500821 NR_037472 ENSG00000266855 MIR3910-1 mir-3910-1 microRNA 3910-1 ncRNA 303-495 chr9 84211979 84212228 + 2 NA Intergenic Helitron1Na_Mam|RC|Helitron 128655 NM_001199633 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 321-614 chrX 73179461 73179750 + 2 NA Intergenic L1MC3|LINE|L1 35246 NM_021963 4674 Hs.66180 NM_021963 ENSG00000186462 NAP1L2 BPX nucleosome assembly protein 1 like 2 protein-coding 211-47 chr11 39419355 39419505 + 2 NA Intergenic Intergenic 770572 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 368-126 chr13 46481718 46482053 + 2 NA Intergenic Intergenic -15109 NR_120426 101929344 Hs.491939 NR_120426 LINC01198 - long intergenic non-protein coding RNA 1198 ncRNA 505-225 chr4 125653257 125653622 + 2 NA Intergenic Intergenic 146180 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 424-269 chr7 145926047 145926339 + 2 NA Intergenic L1ME2|LINE|L1 -848078 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 304-55 chr10 67315004 67315226 + 2 NA intron (NM_001127384, intron 5 of 17) L2a|LINE|L2 88295 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 219-161 chr2 14652604 14652750 + 2 NA TTS (NR_144632) TTS (NR_144632) 19960 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 316-227 chr18 61224709 61225021 + 2 NA Intergenic L2a|LINE|L2 -108565 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 359-462 chr8 40689267 40689572 + 2 NA intron (NM_024645, intron 4 of 6) intron (NM_024645, intron 4 of 6) 208407 NM_001135731 79698 Hs.591850 NM_024645 ENSG00000165061 ZMAT4 - zinc finger matrin-type 4 protein-coding 685-28 chr15 77367724 77368151 + 2 NA intron (NM_024776, intron 1 of 7) Helitron1Nb_Mam|RC|Helitron 52167 NM_024776 79834 Hs.9587 NM_024776 ENSG00000173517 PEAK1 SGK269 pseudopodium enriched atypical kinase 1 protein-coding 487-254 chr6 140433590 140433911 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 228498 NR_037441 100500879 NR_037441 ENSG00000263514 MIR3668 - microRNA 3668 ncRNA 359-229 chr2 57108914 57109171 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -798609 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 740-50 chr20 42231803 42232475 + 2 NA intron (NM_133170, intron 16 of 31) L2a|LINE|L2 -453344 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 311-456 chr7 8366401 8366615 + 2 NA Intergenic Intergenic -67101 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 389-388 chr9 119699642 119699991 + 2 NA Intergenic Intergenic -235244 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 271-279 chr3 126900962 126901186 + 2 NA intron (NM_032343, intron 5 of 7) MSTB|LTR|ERVL-MaLR -87520 NM_032242 5361 Hs.432329 NM_032242 ENSG00000114554 PLXNA1 NOV|NOVP|PLEXIN-A1|PLXN1 plexin A1 protein-coding 569-25 chr10 57818689 57819098 + 2 NA Intergenic LTR18B|LTR|ERVL 449001 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 606-143 chr6 159643733 159644278 + 2 NA Intergenic Intergenic 49236 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 386-71 chr12 18430961 18431263 + 2 NA intron (NM_001288774, intron 18 of 32) MamTip2|DNA|hAT-Tip100 169572 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 255-304 chr4 137841518 137841765 + 2 NA Intergenic Intergenic -247373 NR_038380 641364 Hs.570846 NR_038380 ENSG00000250033 SLC7A11-AS1 - SLC7A11 antisense RNA 1 ncRNA 314-192 chr15 62970408 62970696 + 2 NA Intergenic L1MC4a|LINE|L1 -72195 NM_001365778 7168 Hs.133892 NM_000366 ENSG00000140416 TPM1 C15orf13|CMD1Y|CMH3|HEL-S-265|HTM-alpha|LVNC9|TMSA tropomyosin 1 protein-coding 388-247 chr4 36591641 36591855 + 2 NA intron (NR_149124, intron 2 of 4) intron (NR_149124, intron 2 of 4) 50152 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 323-368 chr4 56989121 56989421 + 2 NA intron (NM_001303268, intron 2 of 23) intron (NM_001303268, intron 2 of 23) 10375 NM_000938 5431 Hs.602757 NM_000938 ENSG00000047315 POLR2B POL2RB|RPB2|hRPB140 RNA polymerase II subunit B protein-coding 266-218 chr20 40536127 40536300 + 2 NA Intergenic Intergenic 153023 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 223-60 chr12 11907963 11908151 + 2 NA Intergenic Intergenic -141804 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 290-472 chr8 136310898 136311109 + 2 NA Intergenic Intergenic -219795 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 356-224 chr2 8176231 8176410 + 2 NA intron (NR_034135, intron 7 of 8) L1MDa|LINE|L1 152099 NR_152741 339789 Hs.565619 NR_034135 ENSG00000236790 LINC00299 C2orf46|NCRNA00299 long intergenic non-protein coding RNA 299 ncRNA 340-365 chr3 90120415 90120597 + 2 NA Intergenic Intergenic 1012885 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 453-262 chr7 81848608 81849054 + 2 NA Intergenic Intergenic -78784 NM_000601 3082 Hs.396530 NM_000601 ENSG00000019991 HGF DFNB39|F-TCF|HGFB|HPTA|SF hepatocyte growth factor protein-coding 351-125 chr14 61431571 61431800 + 2 NA intron (NM_006255, intron 2 of 13) intron (NM_006255, intron 2 of 13) 110242 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 404-327 chr8 119567432 119567772 + 2 NA intron (NM_001330600, intron 23 of 25) intron (NM_001330600, intron 23 of 25) 25406 NR_045555 5168 Hs.190977 NM_006209 ENSG00000136960 ENPP2 ATX|ATX-X|AUTOTAXIN|LysoPLD|NPP2|PD-IALPHA|PDNP2 ectonucleotide pyrophosphatase/phosphodiesterase 2 protein-coding 400-18 chr1 175713740 175714040 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 29705 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 238-105 chr14 71642715 71642887 + 2 NA intron (NM_001354286, intron 8 of 24) intron (NM_001354286, intron 8 of 24) 56503 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 240-400 chr7 85587723 85587935 + 2 NA Intergenic Intergenic 166707 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 383-71 chr11 125552196 125552551 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -17104 NR_110769 9538 Hs.643514 NM_004879 ENSG00000149547 EI24 EPG4|PIG8|TP53I8 EI24 autophagy associated transmembrane protein protein-coding 416-204 chr20 42828502 42828789 + 2 NA intron (NM_133170, intron 2 of 31) THE1C-int|LTR|ERVL-MaLR -140098 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 363-442 chr8 78069060 78069257 + 2 NA Intergenic L1MCb|LINE|L1 -447182 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 505-85 chr14 61106496 61106800 + 2 NA Intergenic AluJr|SINE|Alu -124958 NM_001350253 57570 Hs.380159 NM_020810 ENSG00000126814 TRMT5 COXPD26|KIAA1393|TRM5 tRNA methyltransferase 5 protein-coding 328-475 chr5 131144188 131144415 + 2 NA Intergenic L1MC4|LINE|L1 20955 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 585-45 chr14 81196272 81196663 + 2 NA intron (NM_015859, intron 5 of 8) intron (NM_015859, intron 5 of 8) 6367 NR_003021 677845 Hs.693251 NR_003021 ENSG00000221303 SNORA79 ACA65|SNORA79A small nucleolar RNA, H/ACA box 79 snoRNA 821-56 chr8 129772384 129773032 + 2 NA intron (NM_031415, intron 3 of 13) L1MA9|LINE|L1 13916 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 319-563 chr8 144836808 144837088 + 2 NA intron (NM_001349808, intron 3 of 4) intron (NM_001349808, intron 3 of 4) 9388 NM_001349809 7553 Hs.493218 NM_003416 ENSG00000147789 ZNF7 HF.16|KOX4|zf30 zinc finger protein 7 protein-coding 292-413 chr7 69098153 69098300 + 2 NA Intergenic Intergenic 499398 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 209-303 chr7 83243891 83244044 + 2 NA Intergenic L1MB3|LINE|L1 -81083 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 565-120 chr3 119162921 119163313 + 2 NA Intergenic Intergenic -10481 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 199-94 chr19 39526225 39526370 + 2 NA Intergenic L1MEd|LINE|L1 6555 NM_152361 126272 Hs.135181 NM_152361 ENSG00000176401 EID2B EID-2B|EID-3 EP300 interacting inhibitor of differentiation 2B protein-coding 357-220 chr2 154770657 154770920 + 2 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 72093 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 343-531 chr8 46056192 46056398 + 2 NA Intergenic ALR/Alpha|Satellite|centr 561348 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 550-194 chr6 23299238 23299642 + 2 NA Intergenic Intergenic -581516 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 309-130 chr13 65355968 65356269 + 2 NA Intergenic MER75|DNA|PiggyBac -509929 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 269-2 chr1 4465819 4466044 + 2 NA Intergenic AluSx3|SINE|Alu 53880 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 514-147 chr2 79762854 79763198 + 2 NA intron (NM_001282598, intron 3 of 17) intron (NM_001282598, intron 3 of 17) 103557 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 273-62 chr10 93808543 93808760 + 2 NA Intergenic Intergenic 50715 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 326-157 chr14 85989378 85989543 + 2 NA intron (NR_110155, intron 1 of 3) intron (NR_110155, intron 1 of 3) 54782 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 384-332 chr6 161553633 161553918 + 2 NA intron (NM_004562, intron 8 of 11) L1MC5a|LINE|L1 82798 NR_134594 105378098 Hs.691066 NR_134593 LOC105378098 - uncharacterized LOC105378098 ncRNA 380-299 chr5 25349372 25349590 + 2 NA Intergenic Intergenic 158528 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 311-517 chr8 113861687 113861909 + 2 NA Intergenic Intergenic -424859 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 656-69 chr20 11446686 11447162 + 2 NA Intergenic Intergenic -173541 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 319-268 chr2 154766309 154766569 + 2 NA intron (NM_002239, intron 2 of 2) intron (NM_002239, intron 2 of 2) 67744 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 378-183 chr18 385838 386178 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) 114693 NM_130386 81035 Hs.464422 NM_030781 ENSG00000158270 COLEC12 CLP1|NSR2|SCARA4|SRCL collectin subfamily member 12 protein-coding 309-582 chrX 42443442 42443630 + 2 NA Intergenic L2a|LINE|L2 334627 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 202-107 chr2 4789907 4790080 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -133771 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 644-52 chr21 19143146 19143548 + 2 NA Intergenic LTR40a|LTR|ERVL -383535 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 303-326 chr4 97621060 97621339 + 2 NA intron (NM_174952, intron 10 of 10) L1PREC2|LINE|L1 254273 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 344-286 chr21 26272595 26272934 + 2 NA Intergenic L1MA7|LINE|L1 -101636 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 499-261 chr8 72276980 72277369 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -25540 NR_033867 392232 Hs.454043 NR_033867 LOC392232 - transient receptor potential cation channel subfamily A member 1 pseudogene pseudo 247-268 chr3 104379983 104380171 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -855961 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 198-81 chr16 49164734 49164874 + 2 NA Intergenic L1ME1|LINE|L1 117034 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 333-585 chr8 119989854 119990030 + 2 NA intron (NM_022783, intron 4 of 8) intron (NM_022783, intron 4 of 8) 116220 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 302-375 chr6 41817821 41818011 + 2 NA intron (NM_001286554, intron 1 of 5) intron (NM_001286554, intron 1 of 5) 30473 NM_001134493 100188893 Hs.731633 NM_001134493 ENSG00000214736 TOMM6 OBTP|TOM6 translocase of outer mitochondrial membrane 6 protein-coding 313-86 chr11 79987121 79987326 + 2 NA Intergenic Intergenic -546193 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 251-427 chr9 116047967 116048176 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -105720 NM_002581 5069 Hs.643599 NM_002581 ENSG00000182752 PAPPA ASBABP2|DIPLA1|IGFBP-4ase|PAPA|PAPP-A|PAPPA1 pappalysin 1 protein-coding 506-265 chr7 16842541 16842921 + 2 NA Intergenic AluJb|SINE|Alu -37732 NM_006408 10551 Hs.530009 NM_006408 ENSG00000106541 AGR2 AG-2|AG2|GOB-4|HAG-2|HEL-S-116|HPC8|PDIA17|XAG-2 anterior gradient 2, protein disulphide isomerase family member protein-coding 452-165 chr3 51087394 51087764 + 2 NA intron (NM_004947, intron 7 of 52) L1MA4|LINE|L1 -297712 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 314-338 chr20 15819211 15819376 + 2 NA intron (NM_001351663, intron 8 of 17) intron (NM_001351663, intron 8 of 17) 104021 NR_130925 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 288-412 chr7 69114998 69115153 + 2 NA Intergenic L1MEc|LINE|L1 482549 NR_148927 100507468 Hs.362492 NR_108105 CT66 - cancer/testis associated transcript 66 ncRNA 378-422 chr8 14549097 14549433 + 2 NA intron (NM_001322881, intron 2 of 6) intron (NM_001322881, intron 2 of 6) 304245 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 498-131 chr2 121683352 121683702 + 2 NA intron (NR_037857, intron 2 of 3) FLAM_C|SINE|Alu 33538 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 238-323 chr6 64759551 64759719 + 2 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -541783 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 340-426 chr4 181632118 181632421 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 197704 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 197-221 chr8 135283318 135283436 + 2 NA intron (NR_120396, intron 1 of 4) MLT2E|LTR|ERVL 49246 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 193-12 chr1 96503988 96504127 + 2 NA Intergenic L1ME4a|LINE|L1 -129932 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 293-298 chr4 57811895 57812108 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR 386129 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 423-64 chr12 124125337 124125614 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 152260 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 297-480 chr8 103435041 103435269 + 2 NA intron (NM_015420, intron 7 of 10) L1ME4a|LINE|L1 19769 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 397-44 chr10 112224972 112225198 + 2 NA Intergenic Intergenic -41320 NM_020918 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 259-349 chr6 104021864 104022012 + 2 NA Intergenic Intergenic 837608 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 327-63 chr10 88143896 88144101 + 2 NA Intergenic L1ME3B|LINE|L1 280373 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 246-187 chr2 28613602 28613834 + 2 NA intron (NR_138141, intron 21 of 35) intron (NR_138141, intron 21 of 35) 47361 NR_138141 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 216-59 chr11 79776089 79776270 + 2 NA Intergenic Intergenic -335149 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 415-74 chr14 73845745 73846022 + 2 NA Intergenic L1M4|LINE|L1 -5948 NM_001371335 203-192 chr5 161427724 161427913 + 2 NA intron (NM_000813, intron 5 of 9) intron (NM_000813, intron 5 of 9) 120306 NM_021911 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 344-98 chr12 12278563 12278892 + 2 NA Intergenic L1MC4|LINE|L1 -11683 NM_002336 4040 Hs.584775 NM_002336 ENSG00000070018 LRP6 ADCAD2|STHAG7 LDL receptor related protein 6 protein-coding 559-86 chr19 37960170 37960543 + 2 NA intron (NM_015073, intron 1 of 21) AluJb|SINE|Alu 53148 NM_015073 23094 Hs.655502 NM_015073 ENSG00000105738 SIPA1L3 CTRCT45|SPAL3|SPAR3 signal induced proliferation associated 1 like 3 protein-coding 274-10 chr1 91574392 91574590 + 2 NA Intergenic Intergenic 73383 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 236-111 chr14 49008508 49008709 + 2 NA Intergenic Intergenic 577772 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 312-242 chr2 82227926 82228187 + 2 NA Intergenic Intergenic -628747 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 305-469 chr6 50834875 50835084 + 2 NA intron (NM_003221, intron 3 of 6) intron (NM_003221, intron 3 of 6) 16108 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 232-296 chr5 27033704 27033867 + 2 NA intron (NM_016279, intron 1 of 11) intron (NM_016279, intron 1 of 11) 4801 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 350-5 chr1 67994000 67994322 + 2 NA intron (NR_040077, intron 1 of 9) L1MA9|LINE|L1 57470 NM_004675 9077 Hs.194695 NM_004675 ENSG00000162595 DIRAS3 ARHI|NOEY2 DIRAS family GTPase 3 protein-coding 367-93 chr12 76304515 76304874 + 2 NA non-coding (NR_146531, exon 4 of 4) non-coding (NR_146531, exon 4 of 4) 43721 NM_024685 79738 Hs.96322 NM_024685 ENSG00000179941 BBS10 C12orf58 Bardet-Biedl syndrome 10 protein-coding 298-415 chr6 164162766 164162993 + 2 NA Intergenic Intergenic -491395 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 249-296 chr4 58931439 58931613 + 2 NA Intergenic L1MB1|LINE|L1 -52756 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 588-158 chr8 84009929 84010339 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -172653 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 317 chr1 4200459 4200707 + 2 NA Intergenic L1M4|LINE|L1 -211468 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 275-288 chr5 35336338 35336539 + 2 NA Intergenic LTR37A|LTR|ERV1 -105951 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 546-110 chr2 110152945 110153418 + 2 NA intron (NM_207181, intron 11 of 19) L1MDa|LINE|L1 -36615 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 369-229 chr2 211073789 211074133 + 2 NA Intergenic Intergenic 456390 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 252-435 chr8 121042630 121042868 + 2 NA Intergenic Intergenic -230703 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 145-72 chr6 112596035 112596155 + 2 NA Intergenic Intergenic 248765 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 208-203 chr5 25348982 25349160 + 2 NA Intergenic Intergenic 158118 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 302-219 chr2 106606721 106606937 + 2 NA Intergenic Intergenic 119465 NM_001349727 927 Hs.534308 NM_001349727 ENSG00000232001 CD8B2 CD8BP CD8b2 molecule protein-coding 203-101 chr19 52283507 52283676 + 2 NA intron (NM_001010851, intron 3 of 3) intron (NM_001010851, intron 3 of 3) 1794 NR_030373 693228 NR_030373 ENSG00000208002 MIR643 MIRN643|hsa-mir-643|mir-643 microRNA 643 ncRNA 376-403 chr8 81452958 81453271 + 2 NA Intergenic Intergenic -5675 NM_002677 5375 Hs.571512 NM_002677 ENSG00000147588 PMP2 CMT1G|FABP8|M-FABP|MP2|P2 peripheral myelin protein 2 protein-coding 835-40 chr4 38213122 38213805 + 2 NA Intergenic Intergenic 93509 NM_001253915 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 369-8 chr1 82738732 82739040 + 2 NA Intergenic L1ME3A|LINE|L1 -164297 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 550-65 chr13 103142633 103143041 + 2 NA Intergenic L3b|LINE|CR1 -76420 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 227-207 chr20 57686456 57686603 + 2 NA intron (NM_199171, intron 1 of 3) MIR|SINE|MIR 4157 NM_001255976 56937 Hs.517155 NM_020182 ENSG00000124225 PMEPA1 STAG1|TMEPAI prostate transmembrane protein, androgen induced 1 protein-coding 373-195 chr2 73904673 73904985 + 2 NA intron (NM_001615, intron 3 of 8) intron (NM_001615, intron 3 of 8) 11821 NM_001199893 72 Hs.516105 NM_001615 ENSG00000163017 ACTG2 ACT|ACTA3|ACTE|ACTL3|ACTSG|VSCM actin gamma 2, smooth muscle protein-coding 148-61 chr4 64401099 64401222 + 2 NA intron (NM_001363796, intron 1 of 11) intron (NM_001363796, intron 1 of 11) 8290 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 479-49 chr13 56649507 56649858 + 2 NA Intergenic L1P4a|LINE|L1 -491236 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 406-269 chr7 12601841 12602216 + 2 NA intron (NM_033128, intron 1 of 13) tRNA-Lys-AAG|tRNA|tRNA 12505 NM_033128 85477 Hs.633359 NM_033128 ENSG00000006747 SCIN - scinderin protein-coding 496-180 chr3 83426616 83427022 + 2 NA Intergenic MER34-int|LTR|ERV1 1440677 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 291-43 chr10 34653136 34653363 + 2 NA intron (NM_001184789, intron 2 of 22) intron (NM_001184789, intron 2 of 22) 162047 NM_019619 56288 Hs.131489 NM_019619 ENSG00000148498 PARD3 ASIP|Baz|PAR3|PAR3alpha|PARD-3|PARD3A|PPP1R118|SE2-5L16|SE2-5LT1|SE2-5T2 par-3 family cell polarity regulator protein-coding 295-214 chr2 69612008 69612193 + 2 NA intron (NM_014911, intron 2 of 21) L1MB3|LINE|L1 31639 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 339-21 chr1 98392016 98392308 + 2 NA Intergenic Intergenic 181451 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 434-16 chr1 119196098 119196499 + 2 NA intron (NR_125975, intron 4 of 6) intron (NR_125975, intron 4 of 6) -55626 NM_015836 10352 Hs.523506 NM_015836 ENSG00000116874 WARS2 NEMMLAS|TrpRS|mtTrpRS tryptophanyl tRNA synthetase 2, mitochondrial protein-coding 380-321 chr5 152835851 152836189 + 2 NA intron (NR_109877, intron 2 of 4) intron (NR_109877, intron 2 of 4) 136329 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 588-84 chr20 40199976 40200411 + 2 NA Intergenic MIRb|SINE|MIR 195732 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 272-148 chr17 33625244 33625426 + 2 NA intron (NM_001094, intron 1 of 9) MLT1F2|LTR|ERVL-MaLR -91575 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 269-162 chr18 37915373 37915539 + 2 NA Intergenic Intergenic 258321 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 316-40 chr1 216932265 216932496 + 2 NA intron (NM_001350123, intron 2 of 8) L1M5|LINE|L1 7293 NM_001243513 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 280-235 chr20 53486133 53486347 + 2 NA intron (NM_173485, intron 2 of 2) L1MB3|LINE|L1 -66530 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 244-20 chr1 175652279 175652479 + 2 NA intron (NM_003285, intron 1 of 22) L1ME3Cz|LINE|L1 91216 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 465-66 chr12 63490313 63490681 + 2 NA Intergenic L1PA8|LINE|L1 177996 NM_173812 283417 Hs.533644 NM_173812 ENSG00000177990 DPY19L2 SPATA34|SPGF9 dpy-19 like 2 protein-coding 298-47 chr10 59689922 59690075 + 2 NA intron (NM_194298, intron 1 of 5) intron (NM_194298, intron 1 of 5) 19893 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 206-177 chr4 41917831 41917958 + 2 NA Intergenic Intergenic -17535 NM_018126 55161 Hs.31082 NM_018126 ENSG00000109133 TMEM33 1600019D15Rik|Pom33|SHINC-3|SHINC3 transmembrane protein 33 protein-coding 416-132 chr15 96224752 96225075 + 2 NA intron (NR_125738, intron 2 of 4) intron (NR_125738, intron 2 of 4) -97072 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 303-409 chr6 167136755 167137051 + 2 NA exon (NM_004367, exon 3 of 3) exon (NM_004367, exon 3 of 3) 14150 NM_031409 1235 Hs.46468 NM_004367 ENSG00000112486 CCR6 BN-1|C-C CKR-6|CC-CKR-6|CCR-6|CD196|CKR-L3|CKRL3|CMKBR6|DCR2|DRY6|GPR29|GPRCY4|STRL22 C-C motif chemokine receptor 6 protein-coding 381-281 chr4 105289475 105289759 + 2 NA intron (NR_126420, intron 2 of 5) L1MA4A|LINE|L1 63264 NR_126420 104384744 Hs.624109 NR_126420 TET2-AS1 - TET2 antisense RNA 1 ncRNA 439-220 chr4 182016758 182017095 + 2 NA Intergenic Intergenic 127589 NR_125905 90768 Hs.175465 NR_027107 TENM3-AS1 - TENM3 antisense RNA 1 ncRNA 535-218 chr6 93127786 93128228 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 291552 NM_001288629 2045 Hs.73962 NM_004440 ENSG00000135333 EPHA7 EHK-3|EHK3|EK11|HEK11 EPH receptor A7 protein-coding 205-256 chr7 25563248 25563422 + 2 NA Intergenic Intergenic 99805 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 345-524 chr8 91783852 91784111 + 2 NA Intergenic Intergenic 233699 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 130-83 chr8 42040711 42040807 + 2 NA intron (NM_001305878, intron 2 of 13) AluSq2|SINE|Alu -10991 NR_136589 105379393 Hs.742878 NR_136589 LOC105379393 - uncharacterized LOC105379393 ncRNA 574-132 chr4 161290278 161290696 + 2 NA Intergenic AluSx4|SINE|Alu -732246 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 270-370 chr7 114151352 114151568 + 2 NA intron (NR_033766, intron 1 of 19) intron (NR_033766, intron 1 of 19) 65133 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 264-239 chr20 41623778 41623958 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -5491 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 336-110 chr11 103821976 103822185 + 2 NA Intergenic LTR78B|LTR|ERV1 -27826 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 375-150 chr15 98498968 98499265 + 2 NA intron (NM_182562, intron 2 of 6) L1MA5|LINE|L1 15220 NM_182562 283777 Hs.668070 NM_182562 ENSG00000283597 FAM169B - family with sequence similarity 169 member B protein-coding 255-395 chr7 94668169 94668339 + 2 NA 3' UTR (NM_001184962, exon 2 of 2) 3' UTR (NM_001184962, exon 2 of 2) 11884 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 173-139 chr8 80947522 80947627 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -72793 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 343-188 chr16 76021706 76021922 + 2 NA Intergenic Intergenic -255587 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 177-84 chr2 203037272 203037400 + 2 NA intron (NM_001114132, intron 2 of 54) intron (NM_001114132, intron 2 of 54) 22457 NM_001114132 65065 Hs.648846 NM_198945 ENSG00000144426 NBEAL1 A530083I02Rik|ALS2CR16|ALS2CR17 neurobeachin like 1 protein-coding 486-193 chr22 38543706 38544031 + 2 NA intron (NM_007068, intron 8 of 13) LTR10A|LTR|ERV1 24541 NM_001278208 11144 Hs.339396 NM_007068 ENSG00000100206 DMC1 DMC1H|LIM15|dJ199H16.1 DNA meiotic recombinase 1 protein-coding 366-470 chr9 102298758 102298944 + 2 NA Intergenic Intergenic -220786 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 362-41 chr1 248053187 248053498 + 2 NA intron (NM_001304535, intron 1 of 1) L1PA10|LINE|L1 -7340 NM_001004687 391192 Hs.690412 NM_001004687 ENSG00000198128 OR2L3 - olfactory receptor family 2 subfamily L member 3 protein-coding 294-267 chr21 18082397 18082589 + 2 NA intron (NM_001204178, intron 2 of 5) MSTA-int|LTR|ERVL-MaLR -162340 NM_024944 140578 Hs.283725 NM_024944 ENSG00000154645 CHODL C21orf68|MT75|PRED12 chondrolectin protein-coding 445-230 chr6 22817208 22817567 + 2 NA Intergenic L1MA2|LINE|L1 -99463 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 430-44 chr10 120855029 120855428 + 2 NA intron (NM_018117, intron 2 of 28) MER44B|DNA|TcMar-Tigger 3866 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 322-91 chr11 64588124 64588395 + 2 NA Intergenic L2b|LINE|L2 -2551 NM_001276327 116085 Hs.174424 NM_144585 ENSG00000197891 SLC22A12 OAT4L|RST|URAT1 solute carrier family 22 member 12 protein-coding 281-465 chrX 38476731 38476966 + 2 NA Intergenic L1MC4|LINE|L1 -84630 NM_004615 7102 Hs.441664 NM_004615 ENSG00000156298 TSPAN7 A15|CCG-B7|CD231|DXS1692E|MRX58|MXS1|TALLA-1|TM4SF2|TM4SF2b tetraspanin 7 protein-coding 260-45 chr10 44154061 44154253 + 2 NA Intergenic LTR37A|LTR|ERV1 -138593 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 486-12 chr1 170607527 170607839 + 2 NA Intergenic AluJr|SINE|Alu -56448 NM_006902 5396 Hs.283416 NM_006902 ENSG00000116132 PRRX1 AGOTC|PHOX1|PMX1|PRX-1|PRX1 paired related homeobox 1 protein-coding 242-232 chr3 37219431 37219576 + 2 NA Intergenic Intergenic -23768 NM_001172713 2803 Hs.344151 NM_002078 ENSG00000144674 GOLGA4 CRPF46|GCP2|GOLG|MU-RMS-40.18|p230 golgin A4 protein-coding 569-90 chr2 19716949 19717337 + 2 NA Intergenic Intergenic -151711 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 256-57 chr10 121354290 121354467 + 2 NA Intergenic MER115|DNA|hAT-Tip100 176936 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 138-30 chr17 55959182 55959269 + 2 NA Intergenic Intergenic -194250 NM_001370326 162282 Hs.673040 NM_153228 ENSG00000153930 ANKFN1 - ankyrin repeat and fibronectin type III domain containing 1 protein-coding 410-68 chr12 58102035 58102328 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR 14289 NR_135022 105369785 Hs.539353 NR_135022 ENSG00000257541 LINC02403 - long intergenic non-protein coding RNA 2403 ncRNA 512-209 chr5 23878000 23878427 + 2 NA Intergenic Intergenic -73135 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 265-364 chr7 92985276 92985532 + 2 NA Intergenic Intergenic 132575 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 327-156 chr14 69206950 69207143 + 2 NA intron (NM_001193360, intron 2 of 9) intron (NM_001193360, intron 2 of 9) 15280 NM_001193363 55218 Hs.533878 NM_018199 ENSG00000081177 EXD2 C14orf114|EXDL2 exonuclease 3'-5' domain containing 2 protein-coding 326-114 chr12 2432190 2432484 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 162561 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 367-345 chr5 15795795 15796079 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -139245 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 396-170 chr2 80454953 80455257 + 2 NA intron (NM_001282599, intron 3 of 11) MIR3|SINE|MIR 141726 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 319-387 chr4 106697620 106697930 + 2 NA Intergenic Intergenic 264151 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 367-475 chr9 36757610 36757944 + 2 NA Intergenic MER53|DNA|hAT 65822 NR_039686 100616289 NR_039686 ENSG00000266255 MIR4475 - microRNA 4475 ncRNA 477-281 chr8 83422380 83422830 + 2 NA Intergenic HERVL74-int|LTR|ERVL 18847 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 241-410 chr8 133800346 133800564 + 2 NA Intergenic Intergenic -23103 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 198-237 chr7 97745973 97746120 + 2 NA Intergenic Intergenic 13960 NM_003182 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 280-179 chr19 48731145 48731331 + 2 NA intron (NM_017805, intron 4 of 11) intron (NM_017805, intron 4 of 11) 9372 NM_017805 54922 Hs.233955 NM_017805 ENSG00000105538 RASIP1 RAIN Ras interacting protein 1 protein-coding 171-36 chr15 59463393 59463505 + 2 NA intron (NM_152450, intron 3 of 8) L1MB7|LINE|L1 25263 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 385-343 chr6 144893983 144894287 + 2 NA Intergenic Intergenic 488480 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 271-352 chr5 75218930 75219066 + 2 NA intron (NM_001164443, intron 3 of 24) L1PREC2|LINE|L1 17880 NM_001164443 256006 Hs.482533 NM_001164443 ENSG00000145700 ANKRD31 - ankyrin repeat domain 31 protein-coding 345-272 chr2 106234844 106235096 + 2 NA Intergenic AluY|SINE|Alu -40631 NR_045607 80146 Hs.469561 NM_025076 ENSG00000115652 UXS1 SDR6E1|UGD UDP-glucuronate decarboxylase 1 protein-coding 374-222 chr20 41928842 41929118 + 2 NA Intergenic LTR107_Mam|LTR|LTR -310603 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 310-252 chr2 110135093 110135353 + 2 NA intron (NM_207181, intron 16 of 19) intron (NM_207181, intron 16 of 19) -18657 NM_005434 7851 Hs.185055 NM_005434 ENSG00000144063 MALL BENE mal, T cell differentiation protein like protein-coding 171-111 chr5 164038642 164038781 + 2 NA Intergenic Intergenic 428691 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 284-97 chr12 107593388 107593552 + 2 NA intron (NM_001018072, intron 4 of 16) intron (NM_001018072, intron 4 of 16) 12596 NM_001017523 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 305-490 chr6 168258964 168259160 + 2 NA non-coding (NR_110870, exon 2 of 5) non-coding (NR_110870, exon 2 of 5) 16124 NR_110870 101929420 Hs.571211 NR_110870 ENSG00000234647 LOC101929420 - uncharacterized LOC101929420 ncRNA 282-318 chr3 190539432 190539642 + 2 NA intron (NM_001364879, intron 1 of 10) intron (NM_001364879, intron 1 of 10) 25452 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 339-229 chr18 39071237 39071569 + 2 NA Intergenic Intergenic 550772 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 323-485 chr7 31704221 31704454 + 2 NA intron (NM_001145123, intron 3 of 3) intron (NM_001145123, intron 3 of 3) 17122 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 167-91 chr5 44482140 44482242 + 2 NA Intergenic Intergenic 28091 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 322-64 chr10 70599851 70600088 + 2 NA intron (NM_001083116, intron 2 of 2) MIRc|SINE|MIR 2772 NM_001083116 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 370-9 chr1 80402690 80402962 + 2 NA Intergenic Intergenic -132929 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 361-289 chr3 95288840 95289059 + 2 NA Intergenic AluY|SINE|Alu 350686 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 142-33 chr18 76019313 76019415 + 2 NA Intergenic L1MC|LINE|L1 -103634 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 316-106 chr11 80141074 80141332 + 2 NA Intergenic L2a|LINE|L2 621600 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 270-314 chr5 116411597 116411788 + 2 NA Intergenic MIRb|SINE|MIR -35806 NR_109879 101927233 Hs.732850 NR_109879 ENSG00000248445 SEMA6A-AS1 CTB-118N6.3 SEMA6A antisense RNA 1 ncRNA 312-218 chr19 37803500 37803720 + 2 NA Intergenic Intergenic -13801 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 295-173 chr16 83418249 83418483 + 2 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -89980 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 312-119 chr12 129955429 129955642 + 2 NA Intergenic Intergenic -51510 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 283-24 chr1 166289084 166289265 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger -122419 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 256-76 chr12 2722581 2722784 + 2 NA Intergenic Intergenic -31525 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 339-574 chr8 84428503 84428693 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 13114 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 944-21 chr5 140735784 140736606 + 2 NA Intergenic Intergenic 10036 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 343-224 chr2 18094217 18094412 + 2 NA Intergenic Intergenic 215647 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 158-24 chr13 44409221 44409372 + 2 NA Intergenic Intergenic -3312 NR_104174 400128 Hs.438480 NR_104174 ENSG00000237361 TUSC8 LINC01071|XLOC_010588 tumor suppressor candidate 8 ncRNA 265-344 chr6 146855918 146856102 + 2 NA intron (NR_034115, intron 8 of 10) intron (NR_034115, intron 8 of 10) -52186 NR_003954 729176 Hs.486708 NR_003954 KATNBL1P6 - katanin regulatory subunit B1 like 1 pseudogene 6 pseudo 402-200 chr22 35474149 35474368 + 2 NA Intergenic Intergenic -66236 NM_001366725 23551 Hs.474711 NM_014310 ENSG00000100302 RASD2 Rhes|TEM2 RASD family member 2 protein-coding 300-229 chr2 240156858 240157088 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -16315 NM_148961 150677 Hs.148586 NM_148961 ENSG00000178602 OTOS OTOSP otospiralin protein-coding 339-265 chr2 79040047 79040288 + 2 NA Intergenic Intergenic 14465 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 499-17 chr1 219698749 219699021 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -85740 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 385-331 chr6 74025167 74025539 + 2 NA Intergenic L1PA16|LINE|L1 -44098 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 261-101 chr14 49292333 49292501 + 2 NA Intergenic Intergenic 293963 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 407-173 chr21 15003165 15003415 + 2 NA intron (NM_003489, intron 3 of 3) intron (NM_003489, intron 3 of 3) 61710 NM_003489 8204 Hs.155017 NM_003489 ENSG00000180530 NRIP1 CAKUT3|RIP140 nuclear receptor interacting protein 1 protein-coding 239-79 chr12 93959005 93959192 + 2 NA Intergenic LTR68|LTR|ERV1 -15492 NR_135017 105369911 Hs.577495 NR_135017 ENSG00000257283 LOC105369911 - uncharacterized LOC105369911 ncRNA 449-69 chr13 92190279 92190672 + 2 NA intron (NM_004466, intron 7 of 7) L1MC1|LINE|L1 161732 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 293-225 chr2 237490355 237490640 + 2 NA intron (NM_024101, intron 1 of 15) intron (NM_024101, intron 1 of 15) 3246 NM_024101 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 494-15 chr1 165291043 165291365 + 2 NA intron (NM_177398, intron 3 of 8) intron (NM_177398, intron 3 of 8) 65037 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 262-339 chr5 37871566 37871757 + 2 NA intron (NR_103441, intron 1 of 3) L2b|LINE|L2 31223 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 324-235 chr19 14673588 14673851 + 2 NA intron (NM_032571, intron 1 of 15) MIR|SINE|MIR 1125 NM_001289159 84658 Hs.658712 NM_032571 ENSG00000131355 ADGRE3 EMR3 adhesion G protein-coupled receptor E3 protein-coding 241-11 chr1 78304684 78304877 + 2 NA intron (NR_027310, intron 3 of 5) MIR|SINE|MIR 75181 NR_027310 149047 Hs.352665 NM_144700 ENSG00000237413 MGC27382 - uncharacterized MGC27382 ncRNA 316-382 chr4 19206745 19206989 + 2 NA Intergenic Intergenic -1045038 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 216-163 chr2 40040066 40040230 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 122514 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 335-409 chr5 12047224 12047489 + 2 NA Intergenic Intergenic -142910 NR_109988 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 351-311 chr3 118769935 118770196 + 2 NA intron (NR_135547, intron 1 of 3) intron (NR_135547, intron 1 of 3) 40768 NR_135547 105374060 Hs.99062 NR_135547 LOC105374060 - uncharacterized LOC105374060 ncRNA 358-379 chr5 98826539 98826736 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 52974 NM_001366508 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 245-35 chr10 32491136 32491310 + 2 NA intron (NR_109826, intron 9 of 16) intron (NR_109826, intron 9 of 16) 45083 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 478-147 chr2 124705592 124705919 + 2 NA intron (NM_130773, intron 13 of 23) intron (NM_130773, intron 13 of 23) 680468 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 325-236 chr18 4447308 4447608 + 2 NA intron (NM_001242761, intron 1 of 11) L1ME3C|LINE|L1 7808 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 260-247 chr20 60665603 60665854 + 2 NA Intergenic L1PB1|LINE|L1 101166 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 397-13 chr1 173644430 173644738 + 2 NA intron (NM_198493, intron 3 of 5) intron (NM_198493, intron 3 of 5) 9246 NM_001195190 730159 Hs.647757 NM_001195190 ENSG00000232113 TEX50 - testis expressed 50 protein-coding 326-256 chr2 115828474 115828718 + 2 NA intron (NM_001321912, intron 22 of 25) L1MEc|LINE|L1 484781 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 452-17 chr1 197949919 197950213 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 32694 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 447-135 chr2 141636655 141637012 + 2 NA intron (NM_018557, intron 2 of 90) L1ME3G|LINE|L1 494868 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 391-91 chr13 107897335 107897626 + 2 NA Intergenic LTR12|LTR|ERV1 -29984 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 672-38 chr16 56373387 56374002 + 2 NA intron (NM_001144, intron 10 of 13) L1MC1|LINE|L1 51295 NM_001323511 267 Hs.295137 NM_001144 ENSG00000159461 AMFR GP78|RNF45 autocrine motility factor receptor protein-coding 257-317 chr5 28056845 28057049 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 230718 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 337-533 chr8 60492311 60492524 + 2 NA Intergenic MER21C|LTR|ERVL -24493 NM_001242644 5862 Hs.369017 NM_002865 ENSG00000104388 RAB2A LHX|RAB2 RAB2A, member RAS oncogene family protein-coding 401-259 chr5 57785361 57785699 + 2 NA Intergenic Intergenic 113632 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 410-261 chr6 61981942 61982309 + 2 NA intron (NR_146874, intron 3 of 13) MER92-int|LTR|ERV1 304100 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 241-213 chr20 7446238 7446456 + 2 NA Intergenic L1PB2|LINE|L1 74739 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 415-91 chr16 80893995 80894240 + 2 NA Intergenic Intergenic -1521 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 362-298 chr4 38474164 38474436 + 2 NA intron (NR_110951, intron 2 of 7) intron (NR_110951, intron 2 of 7) -35467 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 544-239 chr9 100813172 100813605 + 2 NA Intergenic Intergenic -215339 NM_207299 54886 Hs.382683 NM_017753 ENSG00000148123 PLPPR1 LPPR1|PRG-3 phospholipid phosphatase related 1 protein-coding 564-62 chr15 58174881 58175361 + 2 NA intron (NM_001320635, intron 4 of 4) intron (NM_001320635, intron 4 of 4) 36740 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 305-431 chr5 42378545 42378797 + 2 NA Intergenic Intergenic -44768 NM_000163 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 544-156 chr3 176672650 176673154 + 2 NA Intergenic MER94|DNA|hAT-Blackjack -37370 NR_109968 100505547 Hs.253350 NR_109968 LINC01208 - long intergenic non-protein coding RNA 1208 ncRNA 448-96 chr17 39806345 39806681 + 2 NA intron (NM_001257409, intron 2 of 5) L1MB7|LINE|L1 -28288 NM_001284516 22806 Hs.371680 NM_012481 ENSG00000161405 IKZF3 AIO|AIOLOS|ZNFN1A3 IKAROS family zinc finger 3 protein-coding 689-101 chr9 10874362 10874784 + 2 NA Intergenic MIRb|SINE|MIR 261367 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 231-36 chr10 60073076 60073265 + 2 NA exon (NM_020987, exon 37 of 44) exon (NM_020987, exon 37 of 44) 67846 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 507-113 chr19 51538462 51538888 + 2 NA Intergenic L1MA4A|LINE|L1 -7005 NM_001177549 946 Hs.720304 NM_001245 ENSG00000105492 SIGLEC6 CD327|CD33L|CD33L1|CD33L2|CDW327|OBBP1 sialic acid binding Ig like lectin 6 protein-coding 276-232 chr2 81814649 81814862 + 2 NA Intergenic Intergenic -347809 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 293-39 chr10 72653623 72653862 + 2 NA Intergenic Intergenic -27551 NM_001363513 10367 Hs.524367 NM_006077 ENSG00000107745 MICU1 CALC|CBARA1|EFHA3|MPXPS|ara CALC mitochondrial calcium uptake 1 protein-coding 310-566 chrX 18782242 18782446 + 2 NA intron (NM_152226, intron 10 of 17) intron (NM_152226, intron 10 of 17) -89657 NR_046642 100874004 NR_046642 PPEF1-AS1 - PPEF1 antisense RNA 1 ncRNA 428-2 chr1 74645960 74646330 + 2 NA intron (NM_001002912, intron 3 of 14) intron (NM_001002912, intron 3 of 14) 27647 NM_001002912 127254 Hs.531182 NM_001002912 ENSG00000178965 ERICH3 C1orf173 glutamate rich 3 protein-coding 309-518 chr7 90806068 90806296 + 2 NA intron (NM_012395, intron 4 of 13) L1ME1|LINE|L1 96366 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 228-328 chr7 126940919 126941094 + 2 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) 117178 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 408-315 chr7 52635440 52635725 + 2 NA Intergenic Intergenic -400051 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 365-177 chr2 5919799 5919986 + 2 NA Intergenic L1M4|LINE|L1 -12795 NR_026832 150622 Hs.560891 NR_026832 SILC1 LINC01105 sciatic injury induced lincRNA upregulator of SOX11 ncRNA 275-371 chr8 131376520 131376758 + 2 NA Intergenic Intergenic -335730 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 316-444 chr5 87401651 87401871 + 2 NA exon (NM_001364076, exon 6 of 9) exon (NM_001364076, exon 6 of 9) 11143 NM_001199189 902 Hs.292524 NM_001239 ENSG00000134480 CCNH CAK|CycH|p34|p37 cyclin H protein-coding 288-242 chr21 28501163 28501381 + 2 NA Intergenic MER65-int|LTR|ERV1 -38046 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 343-439 chr5 92888918 92889193 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 682288 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 221-29 chr10 2067346 2067536 + 2 NA Intergenic Intergenic 8648 NR_106720 102465944 NR_106720 ENSG00000278069 MIR6072 hsa-mir-6072 microRNA 6072 ncRNA 289-235 chr2 107373939 107374128 + 2 NA Intergenic L1MC3|LINE|L1 -24508 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 563-84 chr19 57709287 57709685 + 2 NA promoter-TSS (NM_001085384) promoter-TSS (NM_001085384) -282 NR_110975 7710 Hs.646378 NM_003444 ENSG00000179909 ZNF154 pHZ-92 zinc finger protein 154 protein-coding 468-40 chr10 130024848 130025128 + 2 NA Intergenic Intergenic -60714 NM_001005463 253738 Hs.591374 NM_001005463 ENSG00000108001 EBF3 COE3|EBF-3|HADDS|O/E-2|OE-2 EBF transcription factor 3 protein-coding 344-266 chr2 239845507 239845830 + 2 NA Intergenic L1MA6|LINE|L1 82808 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 565-84 chr2 112849240 112849597 + 2 NA Intergenic MER4A1|LTR|ERV1 -12639 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 189-153 chr4 119071116 119071290 + 2 NA Intergenic Intergenic -64581 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 286-308 chr4 36628865 36629070 + 2 NA intron (NR_149124, intron 1 of 4) intron (NR_149124, intron 1 of 4) 12933 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 459-180 chr3 26722165 26722610 + 2 NA Intergenic Intergenic 27830 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 395-25 chr1 220943999 220944252 + 2 NA Intergenic Intergenic -63985 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 607-16 chr10 5268308 5268808 + 2 NA intron (NR_149060, intron 1 of 1) Tigger3a|DNA|TcMar-Tigger 2678 NR_149060 110806285 NR_149060 ENSG00000224034 LINC02561 - long intergenic non-protein coding RNA 2561 ncRNA 192-36 chr11 40096138 40096281 + 2 NA Intergenic Intergenic 196921 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 651-7 chr1 184168258 184168809 + 2 NA Intergenic L1MA3|LINE|L1 116803 NM_001300766 116461 Hs.548197 NM_052965 ENSG00000198860 TSEN15 C1orf19|PCH2F|sen15 tRNA splicing endonuclease subunit 15 protein-coding 803-13 chr15 59962220 59962768 + 2 NA Intergenic AluSx|SINE|Alu -41817 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 279-377 chr6 152412993 152413246 + 2 NA intron (NM_182961, intron 42 of 145) AluSx1|SINE|Alu 32589 NR_120501 100505475 Hs.571203 NR_120501 SYNE1-AS1 - SYNE1 antisense RNA 1 ncRNA 262-303 chr4 32505506 32505675 + 2 NA Intergenic Intergenic 154552 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 352-174 chr16 77954118 77954317 + 2 NA intron (NM_020927, intron 7 of 8) intron (NM_020927, intron 7 of 8) -68331 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 417-295 chr8 139497554 139497887 + 2 NA Intergenic Intergenic 205403 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 338-587 chr9 71883223 71883396 + 2 NA intron (NM_001025780, intron 1 of 3) L1M5|LINE|L1 27936 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 377-364 chr7 32105103 32105470 + 2 NA intron (NM_001322059, intron 3 of 17) HAL1|LINE|L1 -33850 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 707-108 chr8 131788082 131788607 + 2 NA Intergenic Intergenic -115749 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 178-125 chr6 122328804 122328906 + 2 NA Intergenic Intergenic -70696 NM_001135564 3298 Hs.158195 NM_004506 ENSG00000025156 HSF2 HSF 2|HSTF 2 heat shock transcription factor 2 protein-coding 527-288 chrX 58149677 58150006 + 2 NA Intergenic ALR/Alpha|Satellite|centr -239208 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 345-437 chr5 118530267 118530512 + 2 NA intron (NR_104610, intron 1 of 9) L2a|LINE|L2 31728 NR_104610 101927280 Hs.543951 NR_104610 LINC02208 HRAT56 long intergenic non-protein coding RNA 2208 ncRNA 798-61 chr7 82890053 82890492 + 2 NA intron (NM_033026, intron 9 of 24) intron (NM_033026, intron 9 of 24) 272612 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 355-119 chr11 134526367 134526550 + 2 NA Intergenic L1MB3|LINE|L1 89976 NR_033852 283177 Hs.504390 NR_033852 LOC283177 - uncharacterized LOC283177 ncRNA 219-210 chr20 60612503 60612681 + 2 NA Intergenic Intergenic 48030 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 236-394 chrX 87206274 87206464 + 2 NA Intergenic L1MB3|LINE|L1 -311433 NM_019117 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 377-74 chr11 98693913 98694115 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -326935 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 391-224 chr3 8979572 8979785 + 2 NA TTS (NM_001033117) TTS (NM_001033117) -16206 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 230-286 chr5 14572967 14573147 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -8735 NM_019018 54491 Hs.155085 NM_019018 ENSG00000145569 OTULINL FAM105A|NET20 OTU deubiquitinase with linear linkage specificity like protein-coding 385-116 chr15 71088929 71089233 + 2 NA Intergenic L1PA17|LINE|L1 -52368 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 551-65 chr15 97698214 97698564 + 2 NA Intergenic L1MD2|LINE|L1 -137691 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 501-19 chr10 16130910 16131277 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 -270560 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 248-326 chr5 114968503 114968687 + 2 NA Intergenic Intergenic -195182 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 1045-16 chr5 18022162 18022931 + 2 NA Intergenic Intergenic 215272 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 321-582 chr8 138321832 138322103 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 175294 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 392-163 chr2 183499810 183500045 + 2 NA Intergenic L1ME3A|LINE|L1 375484 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 399-274 chr7 15807501 15807844 + 2 NA Intergenic AluSx1|SINE|Alu 119294 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 299-167 chr17 32477310 32477463 + 2 NA intron (NM_002815, intron 8 of 13) intron (NM_002815, intron 8 of 13) -9607 NM_003885 8851 Hs.500015 NM_003885 ENSG00000176749 CDK5R1 CDK5P35|CDK5R|NCK5A|p23|p25|p35|p35nck5a cyclin dependent kinase 5 regulatory subunit 1 protein-coding 237-16 chr1 116519562 116519749 + 2 NA intron (NR_026665, intron 4 of 5) MER33|DNA|hAT-Charlie 40456 NR_039621 100616384 NR_039621 ENSG00000264419 MIR548AC - microRNA 548ac ncRNA 213-290 chr8 127121493 127121639 + 2 NA Intergenic Intergenic -39345 NR_119373 103164619 Hs.571401 NR_119373 ENSG00000254166 PCAT2 CARLO4|CARLo-4|PCA2|TCONS_00015167 prostate cancer associated transcript 2 ncRNA 267-271 chr3 163565712 163565928 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -262519 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 217-39 chr10 51918529 51918737 + 2 NA intron (NM_001098512, intron 5 of 17) intron (NM_001098512, intron 5 of 17) -219038 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 252-440 chr8 133932844 133933046 + 2 NA Intergenic L1MC3|LINE|L1 46449 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 350-291 chr21 29590025 29590218 + 2 NA intron (NM_000830, intron 10 of 16) intron (NM_000830, intron 10 of 16) -5919 NR_033368 100379661 Hs.659368 NR_033368 ENSG00000156273 GRIK1-AS2 C21orf41|NCRNA00258 GRIK1 antisense RNA 2 ncRNA 333-237 chr2 49024876 49025049 + 2 NA intron (NM_000145, intron 2 of 9) L2c|LINE|L2 -34641 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 340-495 chr7 7097434 7097710 + 2 NA promoter-TSS (NR_034022) promoter-TSS (NR_034022) -786 NR_034022 100131257 Hs.551110 NR_034022 LOC100131257 - zinc finger protein 655 pseudogene pseudo 214-8 chr1 50013085 50013222 + 2 NA intron (NM_001323575, intron 1 of 12) intron (NM_001323575, intron 1 of 12) 10801 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 204-71 chr13 44778134 44778330 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 31398 NR_038433 144817 Hs.585616 NR_038433 ENSG00000235097 LINC00330 NCRNA00330 long intergenic non-protein coding RNA 330 ncRNA 700-56 chr20 54850858 54851295 + 2 NA Intergenic Intergenic 375483 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 512-33 chr10 43567524 43568005 + 2 NA intron (NM_001099283, intron 1 of 1) intron (NM_001099283, intron 1 of 1) 695 NM_005674 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 147-87 chr9 31152554 31152679 + 2 NA Intergenic L1MEc|LINE|L1 228874 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 391-264 chr4 99692029 99692320 + 2 NA Intergenic L1MA9|LINE|L1 -37495 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 160-71 chr3 109707257 109707376 + 2 NA Intergenic Intergenic 104488 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 324-361 chr3 110370118 110370391 + 2 NA Intergenic Intergenic 699705 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 310-215 chr19 40173324 40173602 + 2 NA Intergenic AluJb|SINE|Alu -17963 NM_002446 4294 Hs.466743 NM_002446 ENSG00000130758 MAP3K10 MEKK10|MLK2|MST mitogen-activated protein kinase kinase kinase 10 protein-coding 330-264 chr2 60009061 60009274 + 2 NA Intergenic Intergenic 373869 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 516-87 chr15 96194794 96195210 + 2 NA intron (NR_125738, intron 2 of 4) L1MB7|LINE|L1 -67161 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 630-108 chr5 101373493 101373939 + 2 NA Intergenic Intergenic -470434 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 361-253 chr20 39102604 39102844 + 2 NA Intergenic Intergenic 122024 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 341-58 chr10 30791864 30792134 + 2 NA Intergenic L2a|LINE|L2 68780 NR_134497 105376480 Hs.461867 NR_134497 ENSG00000230720 LINC02644 - long intergenic non-protein coding RNA 2644 ncRNA 242-64 chr11 113390021 113390238 + 2 NA intron (NM_178510, intron 1 of 7) L2b|LINE|L2 2350 NM_178510 255239 Hs.448473 NM_178510 ENSG00000170209 ANKK1 PKK2|sgK288 ankyrin repeat and kinase domain containing 1 protein-coding 388-88 chr12 113659719 113659914 + 2 NA Intergenic MER3|DNA|hAT-Charlie 113867 NR_110026 100506465 Hs.211461 NR_110025 ENSG00000249550 LINC01234 LCAL84|onco-lncRNA-32 long intergenic non-protein coding RNA 1234 ncRNA 240-105 chr12 28975507 28975675 + 2 NA Intergenic Intergenic -173687 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 204-169 chr20 61703071 61703214 + 2 NA intron (NM_001252339, intron 1 of 14) intron (NM_001252339, intron 1 of 14) 16606 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 348-339 chr4 14331336 14331519 + 2 NA Intergenic L1PB1|LINE|L1 219459 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 376-37 chr10 19734309 19734530 + 2 NA TTS (NM_001142308) TTS (NM_001142308) -5869 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 334-491 chr7 37136648 37136820 + 2 NA intron (NM_001206480, intron 13 of 21) L1PB1|LINE|L1 138938 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 298-213 chr2 56056856 56057085 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -9644 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 259-231 chr20 41980169 41980323 + 2 NA Intergenic MIRc|SINE|MIR -361869 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 407-256 chr5 124463843 124464191 + 2 NA Intergenic Intergenic -25497 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 343-137 chr14 51981861 51982152 + 2 NA Intergenic Intergenic -7540 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 190-21 chr10 107140582 107140758 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 24036 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 305-6 chr1 57725523 57725726 + 2 NA intron (NM_001353980, intron 3 of 5) intron (NM_001353980, intron 3 of 5) -134957 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 390-117 chr15 63180359 63180691 + 2 NA Intergenic (T)n|Simple_repeat|Simple_repeat -9081 NM_016530 51762 Hs.389733 NM_016530 ENSG00000166128 RAB8B - RAB8B, member RAS oncogene family protein-coding 327-354 chr4 27344797 27344988 + 2 NA Intergenic Intergenic 127413 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 265-55 chr11 12427147 12427338 + 2 NA intron (NM_018222, intron 1 of 12) intron (NM_018222, intron 1 of 12) 49671 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 511-132 chr2 148601197 148601667 + 2 NA Intergenic Intergenic -43319 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 571-124 chr4 122450321 122450808 + 2 NA TTS (NM_000586) TTS (NM_000586) 5931 NM_000586 3558 Hs.89679 NM_000586 ENSG00000109471 IL2 IL-2|TCGF|lymphokine interleukin 2 protein-coding 493-297 chr8 100002070 100002422 + 2 NA exon (NM_001286693, exon 16 of 26) exon (NM_001286693, exon 16 of 26) -2336 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 235-397 chr9 105338049 105338196 + 2 NA intron (NM_001330731, intron 4 of 15) intron (NM_001330731, intron 4 of 15) 93471 NM_001286730 23446 Hs.573495 NM_022109 ENSG00000070214 SLC44A1 CD92|CDW92|CHTL1|CTL1 solute carrier family 44 member 1 protein-coding 216-279 chr5 77157397 77157559 + 2 NA Intergenic L2c|LINE|L2 -22826 NM_001349750 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 602-112 chr5 170908011 170908554 + 2 NA intron (NM_022897, intron 5 of 27) L1PA16|LINE|L1 46264 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 566-61 chr16 60151680 60152107 + 2 NA Intergenic Intergenic 207900 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 224-238 chr4 188001376 188001547 + 2 NA intron (NM_174900, intron 3 of 3) intron (NM_174900, intron 3 of 3) 5690 NM_001304358 132625 Hs.335787 NM_174900 ENSG00000179059 ZFP42 REX-1|REX1|ZNF754|zfp-42 ZFP42 zinc finger protein protein-coding 236-146 chr17 67981584 67981752 + 2 NA intron (NM_182641, intron 27 of 27) intron (NM_182641, intron 27 of 27) 11938 NM_181655 284018 Hs.90790 NM_181655 ENSG00000186665 C17orf58 - chromosome 17 open reading frame 58 protein-coding 465-85 chr14 89630998 89631363 + 2 NA Intergenic L2c|LINE|L2 -12015 NM_001085471 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 190-114 chr3 22193333 22193473 + 2 NA Intergenic Intergenic 236264 NR_046876 100874221 Hs.160616 NR_046876 ENSG00000223351 ZNF385D-AS2 - ZNF385D antisense RNA 2 ncRNA 245-15 chr1 163967013 163967193 + 2 NA Intergenic L1MA3|LINE|L1 -543912 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 476-257 chr8 20064333 20064656 + 2 NA Intergenic Intergenic 118642 NM_001142324 6570 Hs.158322 NM_003053 ENSG00000036565 SLC18A1 CGAT|VAT1|VMAT1 solute carrier family 18 member A1 protein-coding 249-445 chr9 26574373 26574544 + 2 NA Intergenic Intergenic 318344 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 391-134 chr17 33533370 33533596 + 2 NA non-coding (NR_037584, exon 2 of 3) non-coding (NR_037584, exon 2 of 3) 277 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 323-476 chr6 158220440 158220631 + 2 NA Intergenic AluSx|SINE|Alu 52188 NM_207118 404672 Hs.356224 NM_207118 ENSG00000272047 GTF2H5 C6orf175|TFB5|TFIIH|TGF2H5|TTD|TTD-A|TTD3|TTDA|bA120J8.2 general transcription factor IIH subunit 5 protein-coding 193-211 chr9 21352169 21352311 + 2 NA Intergenic Intergenic -1353 NM_021002 3443 Hs.533470 NM_021002 ENSG00000120235 IFNA6 IFN-alphaK interferon alpha 6 protein-coding 200-212 chr5 41588618 41588756 + 2 NA Intergenic Intergenic -78086 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 277-67 chr11 17446319 17446535 + 2 NA intron (NR_147094, intron 8 of 37) intron (NR_147094, intron 8 of 37) 30418 NM_001351295 6833 Hs.54470 NM_000352 ENSG00000006071 ABCC8 ABC36|HHF1|HI|HRINS|MRP8|PHHI|SUR|SUR1|SUR1delta2|TNDM2 ATP binding cassette subfamily C member 8 protein-coding 399-234 chr4 119677868 119678179 + 2 NA Intergenic Intergenic -49219 NM_001083 8654 Hs.647971 NM_001083 ENSG00000138735 PDE5A CGB-PDE|CN5A|PDE5 phosphodiesterase 5A protein-coding 257-25 chr1 185825111 185825274 + 2 NA intron (NM_031935, intron 1 of 106) MIRb|SINE|MIR 90801 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 709-96 chr8 139492758 139493122 + 2 NA Intergenic L2a|LINE|L2 210183 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 527 chr1 47447699 47448050 + 2 NA Intergenic L1MA5|LINE|L1 -10557 NR_126355 102724077 Hs.159718 NR_126355 LINC01389 - long intergenic non-protein coding RNA 1389 ncRNA 317-4 chr1 33756093 33756295 + 2 NA intron (NM_052896, intron 13 of 69) L2|LINE|L2 -104281 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 528-271 chrX 144940179 144940545 + 2 NA Intergenic MER52D|LTR|ERV1 -307141 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 218-273 chr5 107621988 107622158 + 2 NA intron (NM_001962, intron 1 of 4) intron (NM_001962, intron 1 of 4) 48864 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 301-76 chr11 91853786 91853946 + 2 NA Intergenic Intergenic -371168 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 304-449 chr5 173793300 173793488 + 2 NA Intergenic AluJr|SINE|Alu -2452 NR_108028 101928154 Hs.366725 NR_108028 LINC01485 - long intergenic non-protein coding RNA 1485 ncRNA 400-153 chr2 34768515 34768807 + 2 NA Intergenic L1MA3|LINE|L1 91104 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 348-35 chr1 216179848 216180066 + 2 NA intron (NM_206933, intron 20 of 71) MIR1_Amn|SINE|MIR 107492 NR_125992 102723833 Hs.232072 NR_125992 ENSG00000233620 LOC102723833 - uncharacterized LOC102723833 ncRNA 318-143 chr12 60646969 60647146 + 2 NA Intergenic HUERS-P3-int|LTR|ERV1 957687 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 556-10 chr1 213190780 213191282 + 2 NA intron (NR_146209, intron 8 of 11) L1MA2|LINE|L1 139790 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 312-342 chr3 111225364 111225588 + 2 NA Intergenic Intergenic 153660 NM_015480 25945 Hs.293917 NM_015480 ENSG00000177707 NECTIN3 CD113|CDW113|NECTIN-3|PPR3|PRR3|PVRL3|PVRR3 nectin cell adhesion molecule 3 protein-coding 374-243 chr3 45291529 45291817 + 2 NA Intergenic Intergenic -65386 NM_015444 25907 Hs.740403 NM_015444 ENSG00000249992 TMEM158 BBP|RIS1|p40BBP transmembrane protein 158 (gene/pseudogene) protein-coding 349-121 chr12 25895155 25895361 + 2 NA Intergenic L2c|LINE|L2 -21179 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 181-165 chr8 121237441 121237544 + 2 NA Intergenic Intergenic -401854 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 277-337 chr5 156538055 156538300 + 2 NA intron (NM_001128209, intron 3 of 7) intron (NM_001128209, intron 3 of 7) 211013 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 218-7 chr1 62843279 62843439 + 2 NA intron (NM_178221, intron 10 of 10) intron (NM_178221, intron 10 of 10) 59227 NM_032852 84938 Hs.7353 NM_032852 ENSG00000125703 ATG4C APG4-C|APG4C|AUTL1|AUTL3 autophagy related 4C cysteine peptidase protein-coding 359-55 chr10 43830624 43830883 + 2 NA Intergenic L1MA8|LINE|L1 -14553 NR_033923 414260 Hs.351856 NR_033923 ENSG00000226808 LINC00619 C10orf136|bA168P8.1 long intergenic non-protein coding RNA 619 ncRNA 275-157 chr18 9505947 9506192 + 2 NA intron (NM_006788, intron 1 of 9) MER65C|LTR|ERV1 30556 NM_006788 10928 Hs.528993 NM_006788 ENSG00000017797 RALBP1 RIP1|RLIP1|RLIP76 ralA binding protein 1 protein-coding 299-203 chr2 61372742 61372999 + 2 NA intron (NM_014709, intron 8 of 79) L1MB7|LINE|L1 44507 NR_003707 100124537 Hs.675825 NR_003707 ENSG00000206937 SNORA70B - small nucleolar RNA, H/ACA box 70B snoRNA 230-103 chr13 90390898 90391102 + 2 NA Intergenic L1MC1|LINE|L1 -102288 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 264-165 chr17 52337144 52337339 + 2 NA Intergenic MIR|SINE|MIR -53281 NR_146898 105371830 NR_146898 ENSG00000263317 LINC01982 - long intergenic non-protein coding RNA 1982 ncRNA 342-367 chr4 96159889 96160131 + 2 NA Intergenic Intergenic -150693 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 177-61 chr16 26451909 26452020 + 2 NA Intergenic L1MEc|LINE|L1 426727 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 374-397 chr8 119496575 119496825 + 2 NA Intergenic MIRc|SINE|MIR 80254 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 513-298 chrX 44776931 44777267 + 2 NA Intergenic Intergenic -66922 NM_022076 63904 Hs.534478 NM_022076 ENSG00000189037 DUSP21 LMWDSP21 dual specificity phosphatase 21 protein-coding 786-30 chr2 58857993 58858596 + 2 NA intron (NR_033873, intron 3 of 13) L1M5|LINE|L1 337541 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 304-265 chr2 120193690 120193942 + 2 NA Intergenic L1M4c|LINE|L1 29584 NM_024121 79134 Hs.376722 NM_024121 ENSG00000226479 TMEM185B FAM11B transmembrane protein 185B protein-coding 277-18 chr1 111829082 111829268 + 2 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) 27730 NR_046783 100874295 Hs.738190 NR_046783 ENSG00000232558 KCND3-IT1 - KCND3 intronic transcript 1 ncRNA 303-109 chr13 82235263 82235443 + 2 NA Intergenic Intergenic -1008370 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 313-513 chr7 152680113 152680356 + 2 NA Intergenic AluSx4|SINE|Alu -4093 NM_005431 7516 Hs.647093 NM_005431 ENSG00000196584 XRCC2 FANCU X-ray repair cross complementing 2 protein-coding 230-70 chr12 3526906 3527100 + 2 NA intron (NM_019854, intron 1 of 9) L1MB3|LINE|L1 -34184 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 145-43 chr19 29239171 29239280 + 2 NA Intergenic Intergenic -26074 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 276-453 chr8 83209718 83209948 + 2 NA Intergenic MER52A|LTR|ERV1 -193925 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 206-143 chr20 52063890 52064034 + 2 NA Intergenic L1MC4a|LINE|L1 41522 NM_001319146 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 274-226 chr2 185282996 185283168 + 2 NA Intergenic MER76|LTR|ERVL -116010 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 334-464 chr6 69314473 69314763 + 2 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 481848 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 255-449 chr8 139890932 139891086 + 2 NA intron (NM_001160372, intron 20 of 22) intron (NM_001160372, intron 20 of 22) -187886 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 495-82 chr17 33787468 33787789 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -253868 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 252-152 chr17 51662365 51662563 + 2 NA intron (NM_001082533, intron 5 of 9) intron (NM_001082533, intron 5 of 9) 227037 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 312-333 chr3 70899152 70899319 + 2 NA Intergenic Intergenic 165689 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 172-17 chr10 85944389 85944556 + 2 NA intron (NM_017551, intron 4 of 15) L1ME4b|LINE|L1 320316 NR_029907 442911 NR_029907 ENSG00000199104 MIR346 MIRN346|hsa-mir-346|miR-346|miRNA346 microRNA 346 ncRNA 215-264 chr5 99728622 99728751 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 194696 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 426-222 chr5 8077394 8077787 + 2 NA Intergenic Intergenic 208442 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 168-5 chr1 152039709 152039862 + 2 NA Intergenic Intergenic -2781 NM_005620 6282 Hs.417004 NM_005620 ENSG00000163191 S100A11 HEL-S-43|MLN70|S100C S100 calcium binding protein A11 protein-coding 360-73 chr11 115834773 115835083 + 2 NA Intergenic L1MD2|LINE|L1 -74728 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 525-116 chr2 68672645 68673134 + 2 NA Intergenic MIR|SINE|MIR 29301 NM_138964 10887 Hs.683430 NM_138964 ENSG00000169618 PROKR1 GPR73|GPR73a|PK-R1|PKR1|ZAQ prokineticin receptor 1 protein-coding 248-319 chr5 91243894 91244128 + 2 NA Intergenic L1MEg|LINE|L1 70391 NR_103548 100505994 Hs.628363 NR_103548 ENSG00000248323 LUCAT1 SCAL1|SCAT5 lung cancer associated transcript 1 ncRNA 268-143 chr16 53786394 53786603 + 2 NA intron (NM_001363897, intron 1 of 7) intron (NM_001363897, intron 1 of 7) 82342 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 528-249 chr8 81502175 81502551 + 2 NA Intergenic U4|snRNA|snRNA -19130 NM_001442 2167 Hs.391561 NM_001442 ENSG00000170323 FABP4 A-FABP|AFABP|ALBP|HEL-S-104|aP2 fatty acid binding protein 4 protein-coding 450-199 chr3 89634485 89634886 + 2 NA Intergenic Intergenic 527064 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 308-441 chr6 159293324 159293481 + 2 NA Intergenic L1ME1|LINE|L1 -90129 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 362-146 chr14 54466214 54466425 + 2 NA Intergenic HAL1|LINE|L1 22661 NM_004124 2764 Hs.151413 NM_004124 ENSG00000197045 GMFB GMF glia maturation factor beta protein-coding 247-307 chr4 115974197 115974395 + 2 NA Intergenic Intergenic -325429 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 380-335 chr6 43670129 43670463 + 2 NA TTS (NM_018135) TTS (NM_018135) 17516 NM_001193343 55168 Hs.520149 NM_018135 ENSG00000096080 MRPS18A HumanS18b|MRP-S18-3|MRP-S18-a|MRPS18-3|S18bmt|S18mt-a mitochondrial ribosomal protein S18A protein-coding 241-86 chr12 79564197 79564429 + 2 NA Intergenic Intergenic 126267 NM_001354732 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 227-340 chr7 38857459 38857674 + 2 NA intron (NM_014396, intron 4 of 28) intron (NM_014396, intron 4 of 28) 51625 NM_014396 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 337-385 chr4 32225307 32225619 + 2 NA Intergenic Intergenic -125575 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 412-31 chr10 69984347 69984604 + 2 NA Intergenic L1MB7|LINE|L1 -68371 NM_018649 55506 Hs.499953 NM_018649 ENSG00000099284 H2AFY2 macroH2A2 H2A histone family member Y2 protein-coding 530-198 chr5 60277817 60278218 + 2 NA intron (NM_001364599, intron 1 of 16) L1MDa|LINE|L1 94646 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 579-36 chr14 55963602 55964035 + 2 NA Intergenic L2c|LINE|L2 -154593 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 401-242 chr4 158959833 158960067 + 2 NA intron (NM_152543, intron 3 of 4) intron (NM_152543, intron 3 of 4) 75279 NM_152543 152940 Hs.415576 NM_152543 ENSG00000164123 C4orf45 - chromosome 4 open reading frame 45 protein-coding 224-274 chr6 38954769 38954966 + 2 NA intron (NM_001371, intron 81 of 91) L1M4|LINE|L1 -1760 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 256-154 chr16 62429571 62429793 + 2 NA Intergenic L1M5|LINE|L1 -393244 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 314-533 chr7 47643422 47643687 + 2 NA Intergenic L1M4|LINE|L1 -11690 NM_001123065 401335 Hs.520816 NM_001123065 C7orf65 - chromosome 7 open reading frame 65 protein-coding 256-381 chr7 14213699 14213913 + 2 NA intron (NM_001350717, intron 22 of 24) L1ME3G|LINE|L1 -222381 NM_001163148 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 252-374 chr6 78505620 78505765 + 2 NA Intergenic Intergenic 33617 NR_162115 113218491 NR_162115 MIR10524 - microRNA 10524 ncRNA 291-275 chr22 49422312 49422552 + 2 NA intron (NR_110522, intron 1 of 2) intron (NR_110522, intron 1 of 2) 121034 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 308-196 chr18 32854368 32854572 + 2 NA Intergenic Intergenic -81447 NM_020805 57565 Hs.446164 NM_020805 ENSG00000197705 KLHL14 - kelch like family member 14 protein-coding 233-318 chr5 166940280 166940487 + 2 NA Intergenic Intergenic -14013 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 296-15 chr1 164423103 164423287 + 2 NA Intergenic Intergenic -136165 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 370-248 chr2 145459056 145459397 + 2 NA Intergenic Intergenic 791259 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 262-458 chr9 103424563 103424805 + 2 NA Intergenic Intergenic -99651 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 246-163 chr18 6851957 6852151 + 2 NA intron (NM_001010000, intron 3 of 16) L1ME1|LINE|L1 17569 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 312-66 chr10 125595012 125595237 + 2 NA intron (NM_001318133, intron 3 of 3) L1M5|LINE|L1 20753 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 254-312 chr5 60151142 60151332 + 2 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) 221426 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 546-255 chr9 29809650 29810134 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -596291 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 209-315 chr8 72518107 72518239 + 2 NA Intergenic Intergenic -19052 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 212-24 chr1 237688806 237688944 + 2 NA intron (NM_001035, intron 63 of 104) intron (NM_001035, intron 63 of 104) -173300 NR_027247 100130331 Hs.661736 NR_027247 ENSG00000237250 LOC100130331 - POTE ankyrin domain family, member F pseudogene pseudo 491-34 chr11 50433429 50433792 + 2 NA Intergenic ALR/Alpha|Satellite|centr 24463 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 325-147 chr13 54707472 54707688 + 2 NA Intergenic LTR12F|LTR|ERV1 -395532 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 341-237 chr2 29691003 29691201 + 2 NA intron (NM_004304, intron 3 of 28) intron (NM_004304, intron 3 of 28) -215725 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 243-378 chr6 9390015 9390215 + 2 NA Intergenic Intergenic 737906 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 446-191 chr3 95964585 95964915 + 2 NA Intergenic L1M4c|LINE|L1 -281557 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 338-114 chr11 114215726 114215976 + 2 NA intron (NM_006006, intron 4 of 6) intron (NM_006006, intron 4 of 6) -79962 NM_006169 4837 Hs.503911 NM_006169 ENSG00000166741 NNMT - nicotinamide N-methyltransferase protein-coding 331-149 chr14 38026412 38026646 + 2 NA Intergenic L1PA15|LINE|L1 -124405 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 196-172 chr3 88968355 88968492 + 2 NA Intergenic Intergenic -139198 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 153-81 chr5 144646654 144646801 + 2 NA Intergenic L1MD2|LINE|L1 441336 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 379-174 chr2 150725430 150725745 + 2 NA Intergenic L1ME3G|LINE|L1 96690 NR_110246 101929282 Hs.126866 NR_110244 ENSG00000224048 LINC02612 - long intergenic non-protein coding RNA 2612 ncRNA 443-238 chr5 26124535 26124894 + 2 NA Intergenic Intergenic 913872 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 348-303 chr3 87138372 87138566 + 2 NA intron (NR_104153, intron 1 of 2) intron (NR_104153, intron 1 of 2) 49189 NR_104153 100846978 Hs.570649 NR_047469 ENSG00000281392 LINC00506 - long intergenic non-protein coding RNA 506 ncRNA 341-394 chr4 115935160 115935377 + 2 NA Intergenic AluSx|SINE|Alu -364457 NR_031737 100302290 NR_031737 ENSG00000284253 MIR1973 hsa-mir-1973|mir-1973 microRNA 1973 ncRNA 306-388 chr5 24759813 24760060 + 2 NA Intergenic L1PB4|LINE|L1 80647 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 513-148 chr2 152980758 152981182 + 2 NA Intergenic LTR56|LTR|ERV1 262333 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 257-264 chr3 42327441 42327633 + 2 NA Intergenic L1ME3A|LINE|L1 -61352 NM_000729 885 Hs.458426 NM_000729 ENSG00000187094 CCK - cholecystokinin protein-coding 195-69 chr15 57881820 57881979 + 2 NA Intergenic LTR84b|LTR|ERVL 132124 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 216-224 chr3 83137620 83137823 + 2 NA Intergenic L2|LINE|L2 1151579 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 182-60 chr14 91361188 91361318 + 2 NA intron (NM_001080414, intron 3 of 29) intron (NM_001080414, intron 3 of 29) 56567 NM_001080414 440193 Hs.525536 NM_001080414 ENSG00000015133 CCDC88C DAPLE|HKRP2|HYC1|KIAA1509|SCA40 coiled-coil domain containing 88C protein-coding 391-14 chr1 159774528 159774888 + 2 NA Intergenic Intergenic -6254 NM_001319658 54935 Hs.425801 NM_017823 ENSG00000158716 DUSP23 DUSP25|LDP-3|LDP3|MOSP|VHZ dual specificity phosphatase 23 protein-coding 251-149 chr19 51981576 51981733 + 2 NA TTS (NR_103847) TTS (NR_103847) 5186 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 170-35 chr12 29062301 29062435 + 2 NA Intergenic L1MC1|LINE|L1 -86910 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 369-260 chr3 33331667 33331926 + 2 NA intron (NR_146129, intron 4 of 15) L1MEd|LINE|L1 54354 NR_146133 25827 Hs.475872 NM_012157 ENSG00000153558 FBXL2 FBL2|FBL3 F-box and leucine rich repeat protein 2 protein-coding 135-14 chr13 72895348 72895450 + 2 NA intron (NR_146206, intron 11 of 16) intron (NR_146206, intron 11 of 16) 113266 NR_146206 10464 Hs.441926 NM_006346 ENSG00000083535 PIBF1 C13orf24|CEP90|JBTS33|PIBF progesterone immunomodulatory binding factor 1 protein-coding 242-156 chr19 37699450 37699659 + 2 NA exon (NM_032689, exon 5 of 5) exon (NM_032689, exon 5 of 5) -7239 NM_152605 163115 Hs.722657 NM_152605 ENSG00000196381 ZNF781 - zinc finger protein 781 protein-coding 342-112 chr12 41690340 41690594 + 2 NA Intergenic L1MCa|LINE|L1 -73722 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 449-131 chr2 133127160 133127483 + 2 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) -138874 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 313-112 chr12 77243383 77243649 + 2 NA Intergenic Intergenic -177947 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 527-56 chr12 12895371 12895675 + 2 NA intron (NM_003979, intron 1 of 3) L2|LINE|L2 4501 NM_003979 9052 Hs.631733 NM_003979 ENSG00000013588 GPRC5A GPCR5A|PEIG-1|RAI3|RAIG1|TIG1 G protein-coupled receptor class C group 5 member A protein-coding 254-382 chr7 50335555 50335692 + 2 NA intron (NM_001291840, intron 2 of 2) (TG)n|Simple_repeat|Simple_repeat 16575 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 238-46 chr10 66839602 66839834 + 2 NA intron (NM_001127384, intron 7 of 17) intron (NM_001127384, intron 7 of 17) -86318 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 325-445 chr5 78351931 78352216 + 2 NA Intergenic Intergenic 8468 NR_105014 728769 Hs.586193 NR_105014 ENSG00000245556 SCAMP1-AS1 - SCAMP1 antisense RNA 1 ncRNA 434-144 chr2 74775831 74776096 + 2 NA Intergenic L1ME4b|LINE|L1 -56692 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 355-255 chr2 134671632 134671852 + 2 NA intron (NM_030923, intron 2 of 7) intron (NM_030923, intron 2 of 7) 47258 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 337-299 chr2 239640746 239640973 + 2 NA Intergenic Intergenic -122001 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 409-143 chr2 67723845 67724116 + 2 NA Intergenic Intergenic 101582 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 327-466 chr7 86739967 86740136 + 2 NA intron (NM_001363522, intron 1 of 4) intron (NM_001363522, intron 1 of 4) 96137 NM_000840 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 364-229 chr2 157010481 157010666 + 2 NA Intergenic L1MB1|LINE|L1 -247132 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 512-23 chr1 228197048 228197340 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -10850 NM_052843 84033 Hs.650039 NM_052843 ENSG00000154358 OBSCN ARHGEF30|UNC89 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF protein-coding 297-214 chr2 70628070 70628324 + 2 NA Intergenic L1MEc|LINE|L1 -74371 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 237-289 chr5 25321438 25321620 + 2 NA Intergenic Intergenic 130576 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 288-26 chr1 171903539 171903820 + 2 NA intron (NM_001278252, intron 1 of 14) intron (NM_001278252, intron 1 of 14) 39487 NR_046845 100874284 NR_046845 ENSG00000233540 DNM3-IT1 - DNM3 intronic transcript 1 ncRNA 707-45 chr2 6886593 6887066 + 2 NA intron (NM_080657, intron 2 of 5) intron (NM_080657, intron 2 of 5) 9052 NM_080657 91543 Hs.17518 NM_080657 ENSG00000134321 RSAD2 2510004L01Rik|cig33|cig5|vig1 radical S-adenosyl methionine domain containing 2 protein-coding 187-179 chr8 121966288 121966419 + 2 NA Intergenic MER20|DNA|hAT-Charlie -324913 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 342-375 chr4 166962303 166962593 + 2 NA intron (NM_001204355, intron 2 of 8) intron (NM_001204355, intron 2 of 8) 271978 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 353-293 chr20 61871726 61871972 + 2 NA intron (NM_001252339, intron 5 of 14) intron (NM_001252339, intron 5 of 14) 81813 NR_031658 100302168 NR_031658 ENSG00000284193 MIR1257 MIRN1257|hsa-mir-1257 microRNA 1257 ncRNA 200-286 chr9 31538357 31538553 + 2 NA Intergenic Intergenic -156965 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 481-116 chr17 57470209 57470528 + 2 NA intron (NM_001322250, intron 6 of 13) AluSx|SINE|Alu 53229 NR_110808 101927557 Hs.639984 NR_110808 ENSG00000266100 LOC101927557 - uncharacterized LOC101927557 ncRNA 314-27 chr1 125033745 125033995 + 2 NA Intergenic ALR/Alpha|Satellite|centr 3514758 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 638-21 chr10 117053405 117053944 + 2 NA intron (NM_001258300, intron 1 of 17) L1MB5|LINE|L1 -48097 NM_001258298 57698 Hs.501140 NM_018330 ENSG00000187164 SHTN1 KIAA1598|shootin-1 shootin 1 protein-coding 228-12 chr1 95434589 95434772 + 2 NA Intergenic L1ME3A|LINE|L1 -40057 NR_033966 440594 Hs.514123 NR_033966 ENSG00000233907 LINC01761 - long intergenic non-protein coding RNA 1761 ncRNA 159-104 chr9 109362551 109362672 + 2 NA Intergenic L1ME4b|LINE|L1 -41647 NM_019114 54566 Hs.591901 NM_018424 ENSG00000095203 EPB41L4B CG1|EHM2 erythrocyte membrane protein band 4.1 like 4B protein-coding 297-52 chr10 55217042 55217265 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -381889 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 220-50 chr10 76047502 76047649 + 2 NA intron (NM_001305581, intron 4 of 6) MER58A|DNA|hAT-Charlie 264814 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 343-462 chr6 46760598 46760895 + 2 NA Intergenic Intergenic 13829 NM_001162435 100287718 Hs.736491 NM_001162435 ENSG00000230062 ANKRD66 - ankyrin repeat domain 66 protein-coding 287-210 chr2 163056074 163056353 + 2 NA Intergenic L1MC1|LINE|L1 -217446 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 433-300 chr9 72177491 72177768 + 2 NA intron (NM_001351571, intron 1 of 13) Tigger6a|DNA|TcMar-Tigger 28189 NM_004293 9615 Hs.494163 NM_004293 ENSG00000119125 GDA CYPIN|GAH|GUANASE|NEDASIN guanine deaminase protein-coding 406-191 chr3 104834497 104834900 + 2 NA Intergenic Intergenic -532015 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 238-9 chr1 68829336 68829532 + 2 NA Intergenic Intergenic -226464 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 352-272 chr2 229328298 229328582 + 2 NA Intergenic L1ME1|LINE|L1 -57153 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 450-293 chr8 32952166 32952535 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 230515 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 514-27 chr10 58677389 58677886 + 2 NA intron (NM_001080512, intron 2 of 20) L1PA7|LINE|L1 -37378 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 266-19 chr1 182309126 182309282 + 2 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 4857 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 196-33 chr10 83422196 83422327 + 2 NA Intergenic Intergenic 254828 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 407-120 chr18 32530586 32530887 + 2 NA Intergenic Intergenic 19073 NR_003558 441818 Hs.549773 NR_003558 ENSG00000260389 WBP11P1 HsT3017 WW domain binding protein 11 pseudogene 1 pseudo 261-197 chr2 155458992 155459168 + 2 NA Intergenic Intergenic 760385 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 452-259 chr7 113275171 113275498 + 2 NA Intergenic L1PA17|LINE|L1 -156752 NM_001352687 401397 Hs.117929 NM_001352687 ENSG00000214194 SMIM30 LINC00998 small integral membrane protein 30 protein-coding 503-132 chr18 36959421 36959763 + 2 NA intron (NR_136303, intron 6 of 13) intron (NR_136303, intron 6 of 13) -35778 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 219-159 chr2 13762747 13762898 + 2 NA Intergenic L1M5|LINE|L1 638136 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 341-97 chr11 112707514 112707802 + 2 NA Intergenic Intergenic -151856 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 462-98 chr16 10813259 10813706 + 2 NA intron (NR_134904, intron 2 of 8) Charlie24|DNA|hAT-Charlie 5312 NR_134901 780776 Hs.371576 NM_001079512 ENSG00000166676 TVP23A FAM18A|YDR084C trans-golgi network vesicle protein 23 homolog A protein-coding 293-425 chr8 34609688 34609942 + 2 NA Intergenic L1ME2|LINE|L1 -174106 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 295-428 chr7 9929331 9929590 + 2 NA Intergenic MLT1C-int|LTR|ERVL-MaLR 295190 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 352-509 chr7 123108155 123108455 + 2 NA Intergenic L1PA15|LINE|L1 91664 NM_022444 6561 Hs.489849 NM_022444 ENSG00000081800 SLC13A1 NAS1|NaSi-1 solute carrier family 13 member 1 protein-coding 241-233 chr3 54402970 54403144 + 2 NA intron (NM_018398, intron 4 of 37) L1MA6|LINE|L1 236800 NR_027122 790952 Hs.720658 NR_027122 ENSG00000265992 ESRG HESRG embryonic stem cell related ncRNA 367-137 chr15 57875479 57875710 + 2 NA Intergenic L1M3f|LINE|L1 138429 NM_170697 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 314-406 chr4 27160170 27160436 + 2 NA Intergenic Intergenic -57176 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 439-150 chr2 162047263 162047530 + 2 NA intron (NM_001935, intron 3 of 25) intron (NM_001935, intron 3 of 25) 26819 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 206-136 chr2 239708415 239708608 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -54349 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 173-46 chr16 59167193 59167351 + 2 NA Intergenic MIR|SINE|MIR -432956 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 329-280 chr2 100448495 100448803 + 2 NA Intergenic Intergenic -21833 NM_001011717 129521 Hs.567676 NM_001011717 ENSG00000204640 NMS - neuromedin S protein-coding 174-68 chr2 191607966 191608064 + 2 NA Intergenic Intergenic -70057 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 309-187 chr16 8284151 8284361 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 305582 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 187-33 chr11 107128983 107129114 + 2 NA Intergenic L2c|LINE|L2 -110572 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 297-134 chr14 51350801 51350963 + 2 NA intron (NR_038358, intron 4 of 4) intron (NR_038358, intron 4 of 4) 17489 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 287-82 chr11 20997583 20997732 + 2 NA intron (NM_201551, intron 12 of 18) L1MD3|LINE|L1 328071 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 421-88 chr14 88521713 88522105 + 2 NA intron (NM_007039, intron 2 of 18) intron (NM_007039, intron 2 of 18) 33098 NM_007039 11099 Hs.437040 NM_007039 ENSG00000070778 PTPN21 PTPD1|PTPRL10 protein tyrosine phosphatase non-receptor type 21 protein-coding 384-380 chr8 122979880 122980152 + 2 NA Intergenic Intergenic 45756 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 256-71 chr11 83301749 83301933 + 2 NA Intergenic Intergenic -15434 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 326-240 chr2 52678728 52678957 + 2 NA Intergenic Intergenic 23773 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 361-409 chr7 28300552 28300841 + 2 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 1375 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 529-24 chr11 6821562 6822077 + 2 NA Intergenic L1MA7|LINE|L1 -23864 NM_178168 144124 Hs.447478 NM_178168 ENSG00000166363 OR10A5 JCG6|OR10A1|OR11-403 olfactory receptor family 10 subfamily A member 5 protein-coding 368-296 chr3 97048108 97048436 + 2 NA intron (NM_001080448, intron 3 of 17) intron (NM_001080448, intron 3 of 17) 233678 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 408-320 chr7 103914051 103914420 + 2 NA intron (NM_005045, intron 2 of 64) intron (NM_005045, intron 2 of 64) 75281 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 282-289 chr3 20484440 20484635 + 2 NA Intergenic L1PA13|LINE|L1 142069 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 369-430 chr8 137113293 137113540 + 2 NA Intergenic L1MB7|LINE|L1 300172 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 368-374 chr5 131224086 131224294 + 2 NA Intergenic L2|LINE|L2 -39819 NM_001038702 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 342-421 chr5 117079125 117079304 + 2 NA Intergenic Intergenic -317005 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 248-284 chr4 80727694 80727887 + 2 NA intron (NM_001206997, intron 4 of 6) intron (NM_001206997, intron 4 of 6) -302918 NM_001201 651 Hs.387411 NM_001201 ENSG00000152785 BMP3 BMP-3A bone morphogenetic protein 3 protein-coding 278-26 chr1 247183477 247183688 + 2 NA Intergenic Intergenic -11565 NM_001297567 7678 Hs.421238 NM_003431 ENSG00000196418 ZNF124 HZF-16|HZF16|ZK7 zinc finger protein 124 protein-coding 334-537 chr8 87076681 87076982 + 2 NA intron (NM_173538, intron 4 of 10) intron (NM_173538, intron 4 of 10) 210416 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 400-358 chr8 143894300 143894564 + 2 NA Intergenic AluJb|SINE|Alu -15968 NM_031308 83481 Hs.200412 NM_031308 ENSG00000261150 EPPK1 EPIPL|EPIPL1 epiplakin 1 protein-coding 309-426 chr5 17395310 17395569 + 2 NA Intergenic Intergenic -8129 NR_033975 401177 Hs.508311 NR_033975 ENSG00000250822 LINC02111 - long intergenic non-protein coding RNA 2111 ncRNA 242-36 chr10 57194000 57194188 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 110465 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 309-263 chr2 128802202 128802460 + 2 NA Intergenic L1MD2|LINE|L1 -62269 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 282-204 chr2 60023613 60023887 + 2 NA Intergenic Intergenic 359286 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 346-526 chr9 86777770 86777968 + 2 NA Intergenic L1ME1|LINE|L1 169637 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 344-418 chr6 41162400 41162640 + 2 NA intron (NM_001271821, intron 1 of 3) intron (NM_001271821, intron 1 of 3) 596 NM_001271821 54209 Hs.435295 NM_018965 ENSG00000095970 TREM2 PLOSL2|TREM-2|Trem2a|Trem2b|Trem2c triggering receptor expressed on myeloid cells 2 protein-coding 457-113 chr2 40955278 40955560 + 2 NA Intergenic Intergenic -442984 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 382-381 chr7 50159905 50160247 + 2 NA TTS (NM_001161834) TTS (NM_001161834) 63990 NM_001161834 100130988 Hs.99248 NM_001161834 ENSG00000164500 SPATA48 C7orf72 spermatogenesis associated 48 protein-coding 476-157 chr2 221632534 221632848 + 2 NA Intergenic Intergenic -58489 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 204-59 chr12 62435329 62435476 + 2 NA Intergenic L1M2|LINE|L1 -31424 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 607-69 chr2 22665897 22666344 + 2 NA Intergenic L1MD|LINE|L1 129641 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 490-92 chr14 83839657 83840049 + 2 NA Intergenic Intergenic 1197221 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 157-29 chr12 14023217 14023322 + 2 NA Intergenic L1M4a1|LINE|L1 -42913 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 589-54 chr19 30257501 30258021 + 2 NA Intergenic Intergenic -114623 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 397-146 chr2 29495828 29496091 + 2 NA intron (NM_004304, intron 4 of 28) intron (NM_004304, intron 4 of 28) -20582 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 493-119 chr18 34300643 34300969 + 2 NA Intergenic L1MA3|LINE|L1 -77255 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 561-78 chr16 60955572 60956114 + 2 NA Intergenic Intergenic 99923 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 235-308 chr6 67988667 67988828 + 2 NA Intergenic L1MCa|LINE|L1 -66604 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 260-184 chr18 52329345 52329590 + 2 NA Intergenic L1ME4a|LINE|L1 -10730 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 229-77 chr11 109405257 109405468 + 2 NA Intergenic Intergenic -16828 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 305-84 chr10 124980456 124980705 + 2 NA intron (NM_017580, intron 5 of 8) intron (NM_017580, intron 5 of 8) 25438 NM_001363508 1488 Hs.501345 NM_001329 ENSG00000175029 CTBP2 - C-terminal binding protein 2 protein-coding 466-77 chr14 69515975 69516401 + 2 NA intron (NM_001161498, intron 6 of 12) L1MC1|LINE|L1 31460 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 315-138 chr14 79025704 79025926 + 2 NA intron (NR_073547, intron 14 of 20) MLT1L|LTR|ERVL-MaLR -174167 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 403-59 chr11 98108268 98108516 + 2 NA Intergenic Intergenic -912557 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 561-165 chr5 84455807 84456226 + 2 NA Intergenic L1MA7|LINE|L1 -71136 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 330-318 chr20 16708891 16709159 + 2 NA Intergenic Intergenic -21001 NM_198220 6629 Hs.280378 NM_003092 ENSG00000125870 SNRPB2 Msl1|U2B'' small nuclear ribonucleoprotein polypeptide B2 protein-coding 156-71 chr4 46510588 46510720 + 2 NA Intergenic Intergenic -120526 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 305-514 chr7 97531034 97531277 + 2 NA Intergenic Intergenic -200931 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 196-145 chr2 213480347 213480490 + 2 NA intron (NR_047660, intron 8 of 14) intron (NR_047660, intron 8 of 14) 195954 NR_047659 79582 Hs.743365 NM_024532 ENSG00000144451 SPAG16 PF20|WDR29 sperm associated antigen 16 protein-coding 362-80 chr10 129488477 129488733 + 2 NA intron (NM_002412, intron 1 of 4) L1ME3Cz|LINE|L1 21364 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 376-58 chr10 108769636 108769901 + 2 NA Intergenic Intergenic -700475 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 441-175 chr4 30716653 30716988 + 2 NA Intergenic Intergenic -3549 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 297-320 chr4 34952218 34952420 + 2 NA Intergenic Intergenic -682572 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 248-82 chr12 33488428 33488667 + 2 NA Intergenic Intergenic -48728 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 316-179 chr15 33854801 33855011 + 2 NA exon (NM_001036, exon 98 of 104) exon (NM_001036, exon 98 of 104) -113591 NM_012125 1133 Hs.584747 NM_012125 ENSG00000184984 CHRM5 HM5 cholinergic receptor muscarinic 5 protein-coding 676-26 chr12 44467188 44467556 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 408289 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 293-119 chr14 68347247 68347413 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 281457 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 333-231 chr2 41776263 41776451 + 2 NA Intergenic Intergenic -101198 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 509-183 chr5 31205988 31206325 + 2 NA intron (NM_001362435, intron 1 of 10) (ATAG)n|Simple_repeat|Simple_repeat 12470 NM_001362435 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 225-23 chr1 235609147 235609299 + 2 NA intron (NM_001098721, intron 1 of 3) L1MB7|LINE|L1 40561 NM_001098722 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 354-374 chr5 60328319 60328565 + 2 NA intron (NM_001364599, intron 1 of 16) L1ME3A|LINE|L1 44221 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 250-313 chr4 81869863 81870063 + 2 NA Intergenic L1ME2z|LINE|L1 -398056 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 247-391 chr7 113669494 113669664 + 2 NA Intergenic L1M4|LINE|L1 249430 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 382-89 chr13 42448165 42448425 + 2 NA intron (NR_135319, intron 3 of 3) THE1C|LTR|ERVL-MaLR 23403 NR_135319 105370177 NR_135319 ENSG00000283554 LINC02341 - long intergenic non-protein coding RNA 2341 ncRNA 598-31 chr11 111063458 111063851 + 2 NA Intergenic MIRb|SINE|MIR 33664 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 335-265 chr2 136645337 136645589 + 2 NA Intergenic Intergenic -120082 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 387-307 chr6 48187694 48187942 + 2 NA Intergenic Intergenic -119129 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 345-89 chr11 55746412 55746704 + 2 NA Intergenic Intergenic -26880 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 354-88 chr11 107622194 107622384 + 2 NA intron (NM_018712, intron 2 of 11) intron (NM_018712, intron 2 of 11) 31142 NM_018712 55531 Hs.495779 NM_018712 ENSG00000110675 ELMOD1 - ELMO domain containing 1 protein-coding 425-70 chr12 66244290 66244603 + 2 NA intron (NM_007199, intron 8 of 11) intron (NM_007199, intron 8 of 11) -6636 NR_106757 102465249 NR_106757 ENSG00000284011 MIR6502 hsa-mir-6502 microRNA 6502 ncRNA 215-56 chr11 103935597 103935791 + 2 NA intron (NM_025208, intron 5 of 6) intron (NM_025208, intron 5 of 6) 85788 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 208-137 chr2 196338688 196338841 + 2 NA intron (NM_020760, intron 3 of 28) intron (NM_020760, intron 3 of 28) 23413 NM_001304840 57520 Hs.633212 NM_020760 ENSG00000138411 HECW2 NDHSAL|NEDL2 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 174-22 chr11 42133316 42133431 + 2 NA Intergenic L1MEf|LINE|L1 -47915 NR_135065 101928591 Hs.149771 NR_135065 LINC02745 - long intergenic non-protein coding RNA 2745 ncRNA 387-33 chr10 32769337 32769604 + 2 NA intron (NM_001321115, intron 29 of 43) L1PBa|LINE|L1 132002 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 398-172 chr2 121599817 121600192 + 2 NA intron (NM_015282, intron 2 of 38) intron (NM_015282, intron 2 of 38) 49458 NM_001207051 23332 Hs.469840 NM_015282 ENSG00000074054 CLASP1 MAST1 cytoplasmic linker associated protein 1 protein-coding 242-83 chr12 92661640 92661811 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -41118 NM_001037671 338809 Hs.326303 NM_001037671 ENSG00000187510 C12orf74 - chromosome 12 open reading frame 74 protein-coding 225-258 chr4 184302028 184302179 + 2 NA Intergenic L1ME1|LINE|L1 51874 NR_040108 728175 Hs.590107 NR_040108 ENSG00000180712 LINC02363 - long intergenic non-protein coding RNA 2363 ncRNA 277-47 chr10 32316760 32316989 + 2 NA intron (NM_001282391, intron 1 of 13) L1ME2z|LINE|L1 30284 NM_025209 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 235-137 chr17 42119725 42119891 + 2 NA intron (NM_021078, intron 4 of 17) intron (NM_021078, intron 4 of 17) 1559 NM_021078 2648 Hs.463045 NM_021078 ENSG00000108773 KAT2A GCN5|GCN5L2|PCAF-b|hGCN5 lysine acetyltransferase 2A protein-coding 334-146 chr14 57153844 57154092 + 2 NA Intergenic MLT1B-int|LTR|ERVL-MaLR 114937 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 627-120 chr8 120706113 120706568 + 2 NA intron (NM_021021, intron 1 of 6) intron (NM_021021, intron 1 of 6) -54913 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 541-55 chr13 61190526 61190961 + 2 NA Intergenic Intergenic 9137 NR_036128 100422973 NR_036128 ENSG00000266663 MIR3169 - microRNA 3169 ncRNA 280-200 chr2 104290507 104290685 + 2 NA Intergenic Intergenic 117736 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 349-206 chr17 55730648 55730942 + 2 NA intron (NM_001099640, intron 1 of 3) intron (NM_001099640, intron 1 of 3) 1286 NM_001099640 55273 Hs.173233 NM_018286 ENSG00000166292 TMEM100 - transmembrane protein 100 protein-coding 270-335 chr6 82123446 82123633 + 2 NA Intergenic Intergenic -21774 NR_149135 102724168 Hs.485841 NR_149134 LINC02542 - long intergenic non-protein coding RNA 2542 ncRNA 242-296 chr5 39478410 39478645 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -41904 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 386 chr1 5503618 5503974 + 2 NA Intergenic MER74A|LTR|ERVL 358945 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 309-261 chr2 122127897 122128113 + 2 NA Intergenic L1MA4A|LINE|L1 372354 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 220-310 chr5 169240754 169240915 + 2 NA intron (NM_003062, intron 3 of 35) L1MC3|LINE|L1 22860 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 388-161 chr2 80770181 80770375 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 456899 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 643-28 chr12 128395368 128395821 + 2 NA intron (NM_001136103, intron 1 of 8) MER47A|DNA|TcMar-Tigger 101502 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 234-166 chr2 50588431 50588628 + 2 NA intron (NM_001330093, intron 8 of 22) intron (NM_001330093, intron 8 of 22) 107733 NR_130470 103504737 NR_130470 ENSG00000216191 MIR8485 hsa-mir-8485 microRNA 8485 ncRNA 202-74 chr14 68389715 68389861 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 238999 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 621-56 chr2 62060965 62061373 + 2 NA intron (NM_001321781, intron 2 of 2) L1MEf|LINE|L1 -134946 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 337-503 chr6 130565346 130565546 + 2 NA Intergenic L3|LINE|CR1 128329 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 505-105 chr16 12721766 12722173 + 2 NA intron (NM_018340, intron 2 of 3) intron (NM_018340, intron 2 of 3) 1648 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 381-254 chr3 81064383 81064599 + 2 NA intron (NR_132411, intron 1 of 1) MIRb|SINE|MIR 70623 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 203-4 chr1 56555219 56555364 + 2 NA intron (NM_003713, intron 1 of 5) intron (NM_003713, intron 1 of 5) 24272 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 211-242 chr5 111294943 111295074 + 2 NA intron (NM_001744, intron 1 of 10) intron (NM_001744, intron 1 of 10) 70624 NM_001744 814 Hs.438801 NM_001744 ENSG00000152495 CAMK4 CaMK IV|CaMK-GR|CaMKIV|caMK calcium/calmodulin dependent protein kinase IV protein-coding 199-143 chr20 53952466 53952637 + 2 NA intron (NM_001366297, intron 8 of 8) MER57D|LTR|ERV1 -76842 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 223-3 chr1 62079279 62079408 + 2 NA promoter-TSS (NR_036059) promoter-TSS (NR_036059) -487 NR_036059 100422946 NR_036059 ENSG00000283690 MIR3116-2 - microRNA 3116-2 ncRNA 489-73 chr14 51306603 51306946 + 2 NA intron (NR_145423, intron 1 of 1) L2a|LINE|L2 21611 NR_145423 161342 NR_145423 ENSG00000258955 LINC00519 C14orf30|c14_5317 long intergenic non-protein coding RNA 519 ncRNA 270-267 chr4 70518107 70518368 + 2 NA promoter-TSS (NM_001286731) promoter-TSS (NM_001286731) -332 NM_001286731 401138 Hs.453069 NM_212557 ENSG00000187689 AMTN AI3B|UNQ689 amelotin protein-coding 233-181 chr2 133710037 133710244 + 2 NA Intergenic Intergenic -141677 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 304-305 chr20 58517038 58517261 + 2 NA intron (NR_034147, intron 1 of 6) intron (NR_034147, intron 1 of 6) -1750 NM_001304787 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 451-62 chr14 47402820 47403191 + 2 NA intron (NM_001113498, intron 1 of 16) L2|LINE|L2 -59759 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 389-287 chr5 60478235 60478472 + 2 NA intron (NM_001364599, intron 1 of 16) intron (NM_001364599, intron 1 of 16) -9360 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 353-414 chr5 97509189 97509532 + 2 NA intron (NR_105028, intron 1 of 3) LTR16E2|LTR|ERVL 4664 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 301-391 chr6 27364663 27364953 + 2 NA intron (NR_024553, intron 3 of 4) intron (NR_024553, intron 3 of 4) 6717 NR_002722 7754 Hs.8198 NR_002722 ZNF204P ZNF184-Lp|ZNF204|ZNF315P|b24o18.1 zinc finger protein 204, pseudogene pseudo 376-270 chr4 38747318 38747673 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 35495 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 390-316 chr6 14202863 14203110 + 2 NA Intergenic Intergenic 82468 NR_108096 102216342 Hs.563409 NR_108096 ENSG00000226673 LINC01108 LncRNA-ES1 long intergenic non-protein coding RNA 1108 ncRNA 194-177 chr6 18824578 18824695 + 2 NA Intergenic AluSz|SINE|Alu 252852 NR_030312 693125 NR_030312 ENSG00000207775 MIR548A1 MIRN548A1 microRNA 548a-1 ncRNA 406-99 chr15 71710972 71711232 + 2 NA intron (NM_001286429, intron 2 of 11) (AT)n|Simple_repeat|Simple_repeat -19563 NR_120346 101929173 Hs.680593 NR_120346 THSD4-AS2 - THSD4 antisense RNA 2 ncRNA 362-191 chr17 59907522 59907738 + 2 NA intron (NM_001272044, intron 2 of 15) AluJr|SINE|Alu 14509 NR_161457 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 211-35 chr10 67587471 67587607 + 2 NA intron (NM_001127384, intron 3 of 17) L1PA3|LINE|L1 78121 NM_001291133 29119 Hs.21375 NM_013266 ENSG00000183230 CTNNA3 ARVD13|VR22 catenin alpha 3 protein-coding 353-196 chr17 71997840 71998159 + 2 NA Intergenic Intergenic 27980 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 166-13 chr11 96441247 96441378 + 2 NA Intergenic L1MEg|LINE|L1 51299 NM_001261833 8690 Hs.105940 NM_003772 ENSG00000183340 JRKL HHMJG JRK like protein-coding 260-377 chr6 66260537 66260744 + 2 NA Intergenic HERVIP10FH-int|LTR|ERV1 472761 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 389-109 chr14 95617152 95617479 + 2 NA Intergenic L1MA8|LINE|L1 -34782 NR_152604 27004 Hs.510368 NM_012468 TCL6 TNG1|TNG2 T cell leukemia/lymphoma 6 ncRNA 509-82 chr16 12358637 12358979 + 2 NA intron (NM_032167, intron 16 of 20) MER21A|LTR|ERVL -361513 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 284-359 chr6 131874388 131874626 + 2 NA intron (NM_006208, intron 16 of 24) intron (NM_006208, intron 16 of 24) 66487 NM_006208 5167 Hs.527295 NM_006208 ENSG00000197594 ENPP1 ARHR2|COLED|M6S1|NPP1|NPPS|PC-1|PCA1|PDNP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 protein-coding 248-68 chr11 92664372 92664594 + 2 NA intron (NM_001008781, intron 2 of 24) intron (NM_001008781, intron 2 of 24) 251145 NR_135091 105369431 Hs.532389 NR_135091 LINC02746 - long intergenic non-protein coding RNA 2746 ncRNA 332-17 chr1 104071964 104072166 + 2 NA promoter-TSS (NR_033990) promoter-TSS (NR_033990) -958 NR_033990 100129138 Hs.514487 NR_033990 ENSG00000215869 LOC100129138 - THAP domain containing 3 pseudogene pseudo 317-259 chr2 182159296 182159563 + 2 NA intron (NM_005019, intron 13 of 14) intron (NM_005019, intron 13 of 14) 82634 NM_001258314 5136 Hs.191046 NM_005019 ENSG00000115252 PDE1A CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A phosphodiesterase 1A protein-coding 243-167 chr17 62392272 62392481 + 2 NA intron (NM_001144933, intron 6 of 11) intron (NM_001144933, intron 6 of 11) 11823 NM_173503 146779 Hs.152670 NM_173503 ENSG00000172421 EFCAB3 - EF-hand calcium binding domain 3 protein-coding 271-476 chr9 38767159 38767399 + 2 NA Intergenic L2a|LINE|L2 146191 NR_027294 158228 Hs.632652 NR_027294 FAM201A C9orf122 family with sequence similarity 201 member A ncRNA 216-170 chr2 77663188 77663372 + 2 NA Intergenic L1ME3B|LINE|L1 -140847 NR_146416 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 436-160 chr20 15973590 15973889 + 2 NA intron (NM_001351663, intron 13 of 17) intron (NM_001351663, intron 13 of 17) 12143 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 193-48 chr12 100909616 100909733 + 2 NA intron (NM_178826, intron 2 of 26) intron (NM_178826, intron 2 of 26) 8028 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 217-396 chrX 73654217 73654398 + 2 NA intron (NM_001300884, intron 3 of 4) L1M2|LINE|L1 91159 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 420-153 chr2 153334266 153334655 + 2 NA Intergenic Intergenic 144302 NM_019845 56475 Hs.100890 NM_019845 ENSG00000177519 RPRM REPRIMO reprimo, TP53 dependent G2 arrest mediator homolog protein-coding 381-95 chr13 81740305 81740603 + 2 NA Intergenic Intergenic -513471 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 193-60 chr14 56861708 56861860 + 2 NA intron (NR_146411, intron 2 of 2) intron (NR_146411, intron 2 of 2) 48626 NR_029385 100309464 Hs.637962 NR_029385 ENSG00000248550 OTX2-AS1 OTX2OS1 OTX2 antisense RNA 1 (head to head) ncRNA 502-159 chr20 59482842 59483198 + 2 NA Intergenic Intergenic -94489 NM_001199505 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 508-141 chr3 7534150 7534649 + 2 NA intron (NR_046606, intron 1 of 2) MIR|SINE|MIR 885 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 200-169 chr3 28982212 28982363 + 2 NA Intergenic Tigger16a|DNA|TcMar-Tigger 298652 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 372-143 chr14 62367898 62368189 + 2 NA Intergenic MER89-int|LTR|ERV1 -228070 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 304-472 chr6 158907249 158907413 + 2 NA intron (NR_160979, intron 2 of 2) LTR24B|LTR|ERV1 18854 NR_160979 100130967 Hs.32804 NM_001195032 C6orf99 - chromosome 6 open reading frame 99 ncRNA 235 chr1 4188053 4188226 + 2 NA Intergenic L1MA9|LINE|L1 -223912 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 373-291 chr4 84341595 84341805 + 2 NA Intergenic L1M4b|LINE|L1 -42531 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 341-110 chr12 25710226 25710429 + 2 NA Intergenic Intergenic -61749 NM_001352234 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 213-21 chr1 206049665 206049866 + 2 NA Intergenic Intergenic -3408 NM_001007544 440712 Hs.662248 NM_001007544 ENSG00000263961 RHEX C1orf186 regulator of hemoglobinization and erythroid cell expansion protein-coding 255-452 chr9 21993187 21993381 + 2 NA intron (NM_001363763, intron 1 of 2) intron (NM_001363763, intron 1 of 2) 1207 NM_058195 1029 Hs.512599 NM_000077 ENSG00000147889 CDKN2A ARF|CDK4I|CDKN2|CMM2|INK4|INK4A|MLM|MTS-1|MTS1|P14|P14ARF|P16|P16-INK4A|P16INK4|P16INK4A|P19|P19ARF|TP16 cyclin dependent kinase inhibitor 2A protein-coding 565-158 chr6 66721792 66722281 + 2 NA Intergenic Intergenic 934157 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 411-258 chr6 96280622 96280918 + 2 NA Intergenic Intergenic -241036 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 218-196 chr21 24948325 24948464 + 2 NA intron (NR_046198, intron 2 of 3) (CCAG)n|Simple_repeat|Simple_repeat 107844 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 495-239 chr7 67824670 67825100 + 2 NA Intergenic Intergenic -195368 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 325-332 chr22 49380133 49380299 + 2 NA Intergenic Intergenic 163250 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 621-7 chr1 174522323 174522840 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 74617 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 193-150 chr4 25228939 25229089 + 2 NA Intergenic L1MEf|LINE|L1 -5019 NR_144633 55300 Hs.191701 NM_018323 ENSG00000038210 PI4K2B PI4KIIB|PIK42B phosphatidylinositol 4-kinase type 2 beta protein-coding 320-385 chr4 46649555 46649732 + 2 NA Intergenic L1PA15-16|LINE|L1 -259515 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 374-428 chrX 73370231 73370493 + 2 NA Intergenic L1PA15|LINE|L1 -76892 NM_005193 1046 Hs.553488 NM_005193 ENSG00000131264 CDX4 - caudal type homeobox 4 protein-coding 767-51 chr7 52384883 52385446 + 2 NA Intergenic AluSx1|SINE|Alu -650469 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 401-221 chr4 18273925 18274293 + 2 NA Intergenic L2c|LINE|L2 -252234 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 306-508 chr8 89885322 89885537 + 2 NA Intergenic Intergenic -16439 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 367-138 chr15 61105837 61106086 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 123341 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 219-195 chr2 234046379 234046554 + 2 NA Intergenic Intergenic -4236 NM_006944 6694 Hs.444488 NM_006944 ENSG00000072080 SPP2 SPP-24|SPP24 secreted phosphoprotein 2 protein-coding 200-250 chr7 20212239 20212387 + 2 NA intron (NM_182762, intron 1 of 6) intron (NM_182762, intron 1 of 6) 5071 NM_182762 346389 Hs.598388 NM_182762 ENSG00000183742 MACC1 7A5|SH3BP4L MET transcriptional regulator MACC1 protein-coding 635-12 chr10 11145039 11145547 + 2 NA intron (NM_001326334, intron 2 of 13) intron (NM_001326334, intron 2 of 13) -19588 NM_001326349 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 786-47 chr4 93416266 93416722 + 2 NA intron (NM_001286838, intron 8 of 14) intron (NM_001286838, intron 8 of 14) -412259 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 256-33 chr10 17488832 17488967 + 2 NA Intergenic Intergenic -34304 NR_144322 338596 Hs.677766 NM_001004470 ENSG00000148488 ST8SIA6 SIA8F|SIAT8-F|SIAT8F|ST8SIA-VI|ST8SiaVI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6 protein-coding 345-469 chr6 119133328 119133577 + 2 NA intron (NM_001288576, intron 1 of 15) LTR16A|LTR|ERVL 15741 NM_001288576 79632 Hs.443789 NM_024581 ENSG00000111879 FAM184A C6orf60 family with sequence similarity 184 member A protein-coding 355-516 chr8 134931563 134931865 + 2 NA Intergenic Intergenic 81779 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 216-83 chr13 56675579 56675732 + 2 NA Intergenic L1M4|LINE|L1 -465263 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 249-291 chr4 48144857 48145015 + 2 NA intron (NM_003215, intron 14 of 17) intron (NM_003215, intron 14 of 17) -10686 NM_003328 7294 Hs.479669 NM_003328 ENSG00000074966 TXK BTKL|PSCTK5|PTK4|RLK|TKL TXK tyrosine kinase protein-coding 219-325 chr7 8074057 8074235 + 2 NA intron (NM_138426, intron 6 of 7) L2b|LINE|L2 105350 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 235-391 chr9 79425141 79425279 + 2 NA Intergenic L1MA5|LINE|L1 -146563 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 186-90 chr2 193234736 193234848 + 2 NA Intergenic L1MA7|LINE|L1 484947 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 200-41 chr11 14703666 14703800 + 2 NA intron (NM_000922, intron 1 of 15) L1MEd|LINE|L1 59929 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 588-92 chr22 31505616 31506050 + 2 NA intron (NM_001258326, intron 1 of 30) AluJb|SINE|Alu 9297 NM_001007467 9814 Hs.62209 NM_014775 ENSG00000198089 SFI1 PISD|PPP1R139|hSfi1p SFI1 centrin binding protein protein-coding 130-2 chr1 79986178 79986298 + 2 NA Intergenic Intergenic -549517 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 363-486 chrX 67136023 67136379 + 2 NA Intergenic L1MB3|LINE|L1 -407820 NM_000044 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 241-12 chr1 84335254 84335459 + 2 NA intron (NM_001134663, intron 3 of 3) L1PA15|LINE|L1 32705 NM_001134664 148418 Hs.591445 NM_001010971 ENSG00000203943 SAMD13 HSD-41|HSD-42 sterile alpha motif domain containing 13 protein-coding 308-479 chr8 11334299 11334547 + 2 NA Intergenic L1M4c|LINE|L1 3437 NM_054028 83650 Hs.458397 NM_054028 ENSG00000177710 SLC35G5 AMAC|AMAC1L2 solute carrier family 35 member G5 protein-coding 259-432 chr9 89102102 89102332 + 2 NA intron (NM_016848, intron 2 of 11) L1ME1|LINE|L1 76601 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 342-181 chr16 62761480 62761758 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -725181 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 276-269 chr21 21460887 21461095 + 2 NA intron (NM_001352592, intron 13 of 18) intron (NM_001352592, intron 13 of 18) 276328 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 247-220 chr2 161588479 161588613 + 2 NA Intergenic L1MA9|LINE|L1 -35789 NM_001178016 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 176-154 chr9 89108535 89108644 + 2 NA intron (NM_016848, intron 2 of 11) intron (NM_016848, intron 2 of 11) 70229 NM_016848 53358 Hs.292737 NM_016848 ENSG00000148082 SHC3 N-Shc|NSHC|RAI|SHCC SHC adaptor protein 3 protein-coding 247-282 chr3 194934030 194934212 + 2 NA Intergenic L1M5|LINE|L1 -160467 NR_104188 100874528 Hs.581659 NR_104188 ENSG00000233303 XXYLT1-AS1 - XXYLT1 antisense RNA 1 ncRNA 913-24 chr20 48533680 48534342 + 2 NA Intergenic Intergenic 174100 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 279-237 chr21 31974291 31974537 + 2 NA intron (NM_014586, intron 6 of 10) L1MC5a|LINE|L1 101394 NM_014586 30811 Hs.109437 NM_014586 ENSG00000142149 HUNK - hormonally up-regulated Neu-associated kinase protein-coding 292-65 chr10 131782422 131782614 + 2 NA intron (NR_038365, intron 2 of 4) intron (NR_038365, intron 2 of 4) 7681 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 550-231 chr8 114691731 114692188 + 2 NA Intergenic Intergenic 976054 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 351-32 chr1 245194319 245194610 + 2 NA intron (NM_018012, intron 2 of 14) AluSx3|SINE|Alu 39479 NM_018012 55083 Hs.143134 NM_018012 ENSG00000162849 KIF26B - kinesin family member 26B protein-coding 342-291 chr20 55845068 55845289 + 2 NA Intergenic Intergenic 160341 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 295-6 chr1 46236256 46236539 + 2 NA Intergenic L1M5|LINE|L1 -11291 NM_001370766 8438 Hs.642042 NM_003579 ENSG00000085999 RAD54L HR54|RAD54A|hHR54|hRAD54 RAD54 like protein-coding 129-79 chr9 31173828 31173913 + 2 NA Intergenic L1M4|LINE|L1 207620 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 235-353 chr8 69346405 69346559 + 2 NA Intergenic FLAM_C|SINE|Alu 101762 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 296-495 chr9 33422762 33423022 + 2 NA Intergenic L1ME4c|LINE|L1 -20210 NM_001318158 364 Hs.455323 NM_001170 ENSG00000165269 AQP7 AQP7L|AQPap|GLYCQTL aquaporin 7 protein-coding 432-193 chr4 26745027 26745352 + 2 NA intron (NM_001292054, intron 15 of 17) L1MEf|LINE|L1 115055 NR_134675 105374546 Hs.548859 NR_134673 STIM2-AS1 - STIM2 antisense RNA 1 ncRNA 177-43 chr13 92810011 92810155 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -88469 NR_046520 100873969 Hs.577863 NR_046520 ENSG00000235984 GPC5-AS1 - GPC5 antisense RNA 1 ncRNA 306-460 chr7 29321233 29321486 + 2 NA intron (NM_001293070, intron 2 of 13) intron (NM_001293070, intron 2 of 13) -112389 NR_120522 102724484 Hs.638665 NR_120522 LOC102724484 - uncharacterized LOC102724484 ncRNA 249-60 chr10 106339316 106339535 + 2 NA Intergenic Intergenic 199260 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 183-95 chr3 100086525 100086673 + 2 NA intron (NM_001042459, intron 1 of 4) intron (NM_001042459, intron 1 of 4) 27914 NM_001042459 11259 Hs.104672 NM_014890 ENSG00000168386 FILIP1L DOC-1|DOC1|GIP130|GIP90 filamin A interacting protein 1 like protein-coding 410-23 chr1 248601693 248601939 + 2 NA Intergenic Intergenic -8048 NM_001004693 127069 Hs.553585 NM_001004693 ENSG00000184022 OR2T10 OR1-64 olfactory receptor family 2 subfamily T member 10 protein-coding 1029-5 chr14 72136896 72137763 + 2 NA intron (NM_001370288, intron 2 of 16) MER21C|LTR|ERVL 203802 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 242-236 chr3 74378592 74378826 + 2 NA intron (NM_020872, intron 4 of 21) MER58A|DNA|hAT-Charlie 142431 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 331-353 chr3 79963002 79963296 + 2 NA Intergenic L1MA9|LINE|L1 -195151 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 245-134 chr14 83111658 83111825 + 2 NA Intergenic Intergenic 469109 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 213-35 chr10 42533194 42533371 + 2 NA intron (NR_026777, intron 5 of 7) L1M4c|LINE|L1 19588 NR_026777 100129482 Hs.278064 NR_026777 ENSG00000234420 ZNF37BP KOX21|ZNF37B zinc finger protein 37B, pseudogene pseudo 264-233 chr20 9546786 9546943 + 2 NA intron (NM_020341, intron 8 of 10) intron (NM_020341, intron 8 of 10) -31866 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 245-138 chr15 27321854 27322094 + 2 NA intron (NM_001270873, intron 3 of 5) intron (NM_001270873, intron 3 of 5) -160655 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 274-232 chr20 14759561 14759778 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 169849 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 657-85 chr6 77903348 77903910 + 2 NA intron (NM_001282136, intron 4 of 4) L1MA8|LINE|L1 250590 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 508-158 chr3 161440200 161440679 + 2 NA intron (NR_102265, intron 2 of 3) intron (NR_102265, intron 2 of 3) 14012 NR_102265 101243545 Hs.737526 NR_102265 ENSG00000240567 LINC02067 - long intergenic non-protein coding RNA 2067 ncRNA 288-357 chr6 23669844 23670109 + 2 NA Intergenic L1MC1|LINE|L1 -456239 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 332-8 chr1 66714857 66715144 + 2 NA intron (NM_001350218, intron 16 of 22) intron (NM_001350218, intron 16 of 22) -37459 NM_152665 200132 Hs.479226 NM_152665 ENSG00000152760 TCTEX1D1 - Tctex1 domain containing 1 protein-coding 719-70 chr6 159269585 159270181 + 2 NA intron (NM_032532, intron 22 of 22) MLT2D|LTR|ERVL -99876 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 346-448 chr6 153847217 153847452 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -163162 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 353-317 chr3 28962880 28963168 + 2 NA Intergenic L1MB7|LINE|L1 317915 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 279-451 chrX 126412194 126412359 + 2 NA Intergenic Intergenic 140538 NM_178470 139170 Hs.120403 NM_178470 ENSG00000198889 DCAF12L1 KIAA1892L|WDR40B DDB1 and CUL4 associated factor 12 like 1 protein-coding 342-207 chr18 66017345 66017539 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 266430 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 236-337 chr7 103998350 103998540 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -8787 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 1036-24 chr7 50222220 50222923 + 2 NA Intergenic L1MB5|LINE|L1 -81493 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 228-315 chr7 38033114 38033277 + 2 NA Intergenic Intergenic 111876 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 691-69 chr5 75651750 75652269 + 2 NA intron (NM_001276713, intron 7 of 13) intron (NM_001276713, intron 7 of 13) 40533 NM_001276713 728780 Hs.370455 NM_001271529 ENSG00000189045 ANKDD1B - ankyrin repeat and death domain containing 1B protein-coding 314-453 chr5 24936443 24936736 + 2 NA Intergenic Intergenic -96006 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 203-53 chr13 69904262 69904430 + 2 NA intron (NM_001286725, intron 3 of 9) (AATATG)n|Simple_repeat|Simple_repeat -202867 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 381-417 chrX 85725195 85725393 + 2 NA Intergenic L1MA4A|LINE|L1 -110486 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 817-41 chr4 124852403 124853179 + 2 NA Intergenic Intergenic -140059 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 259-283 chr4 56645951 56646159 + 2 NA Intergenic Intergenic 10467 NM_001145459 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 436-11 chr1 90280028 90280383 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 285095 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 660-113 chr8 136320592 136321110 + 2 NA Intergenic L1MEc|LINE|L1 -209947 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 132-29 chr14 86023555 86023638 + 2 NA intron (NR_110155, intron 1 of 3) THE1B|LTR|ERVL-MaLR 88918 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 309-14 chr1 115206413 115206661 + 2 NA Intergenic L1ME3C|LINE|L1 -76497 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 275-212 chr2 189000850 189001097 + 2 NA intron (NM_000090, intron 32 of 50) intron (NM_000090, intron 32 of 50) 5343 NR_037401 100500837 NR_037401 ENSG00000284180 MIR3606 mir-3606 microRNA 3606 ncRNA 382-265 chr3 64619341 64619653 + 2 NA intron (NM_001318781, intron 18 of 38) MIR|SINE|MIR 58151 NR_110150 101929335 Hs.476604 NR_110150 ENSG00000241158 ADAMTS9-AS1 - ADAMTS9 antisense RNA 1 ncRNA 397-73 chr13 67394725 67394983 + 2 NA Intergenic Intergenic 22467 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 442-146 chr2 162898610 162898972 + 2 NA Intergenic MIRb|SINE|MIR -60024 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 411-204 chr4 58439502 58439893 + 2 NA Intergenic L2a|LINE|L2 96631 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 260-468 chrX 58301744 58301920 + 2 NA Intergenic ALR/Alpha|Satellite|centr -391199 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 206-157 chr3 53559383 53559551 + 2 NA intron (NM_001128840, intron 3 of 47) L1MEf|LINE|L1 64856 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 466-108 chr18 55476979 55477318 + 2 NA intron (NM_001348217, intron 2 of 18) intron (NM_001348217, intron 2 of 18) -2073 NR_039754 100616290 NR_039754 ENSG00000264571 MIR4529 - microRNA 4529 ncRNA 378-82 chr11 59888343 59888543 + 2 NA Intergenic L1PA10|LINE|L1 -21956 NM_001062 6947 Hs.2012 NM_001062 ENSG00000134827 TCN1 HC|TC-1|TC1|TCI transcobalamin 1 protein-coding 716-20 chr12 119048817 119049291 + 2 NA intron (NM_194286, intron 1 of 12) L2a|LINE|L2 67513 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 270-327 chr6 26638697 26638886 + 2 NA intron (NM_001242798, intron 2 of 2) intron (NM_001242798, intron 2 of 2) 20955 NM_024639 79692 Hs.126280 NM_024639 ENSG00000181315 ZNF322 HCG12|ZNF322A|ZNF388|ZNF489 zinc finger protein 322 protein-coding 234-149 chr19 11686038 11686225 + 2 NA non-coding (NR_028594, exon 3 of 3) non-coding (NR_028594, exon 3 of 3) 12133 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 232-403 chr9 94174104 94174276 + 2 NA Intergenic MER21B|LTR|ERVL -1767 NR_029476 406881 NR_029476 ENSG00000199165 MIRLET7A1 LET7A1|MIRNLET7A1|let-7a-1 microRNA let-7a-1 ncRNA 577-154 chr5 114984754 114985289 + 2 NA Intergenic Intergenic 184887 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 362-294 chr4 36929391 36929618 + 2 NA Intergenic Intergenic -72275 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 214-336 chr8 121083279 121083438 + 2 NA Intergenic LTR8B|LTR|ERV1 -271312 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 335-266 chr2 136654090 136654347 + 2 NA Intergenic Intergenic -111327 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 383-100 chr13 92401939 92402282 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -49903 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 620-128 chr7 14532358 14532776 + 2 NA intron (NM_001350717, intron 19 of 24) L1M4a2|LINE|L1 308883 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 368-190 chr17 51948036 51948401 + 2 NA intron (NM_001082533, intron 3 of 9) LTR50|LTR|ERVL 210496 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 484-227 chr5 139493515 139493820 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -10909 NM_001301738 340061 Hs.379754 NM_198282 ENSG00000184584 TMEM173 ERIS|MITA|MPYS|NET23|SAVI|STING|STING-beta|hMITA|hSTING transmembrane protein 173 protein-coding 643-52 chr2 22918360 22918769 + 2 NA Intergenic AluY|SINE|Alu 382085 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 241-133 chr16 61487604 61487801 + 2 NA Intergenic Intergenic -431936 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 549-127 chr20 33024017 33024538 + 2 NA TTS (NM_025227) TTS (NM_025227) -7371 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 338-554 chr8 113085497 113085705 + 2 NA intron (NM_001363185, intron 5 of 66) L1MA5|LINE|L1 291551 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 232-190 chr2 154923230 154923387 + 2 NA Intergenic Intergenic 224613 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 463-68 chr12 38898486 38898818 + 2 NA intron (NM_153634, intron 1 of 19) intron (NM_153634, intron 1 of 19) 6939 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 220-225 chr3 65961297 65961475 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -6828 NR_145422 151877 Hs.476636 NR_145422 ENSG00000272610 MAGI1-IT1 - MAGI1 intronic transcript 1 ncRNA 331-456 chr6 56520727 56520971 + 2 NA intron (NM_001144770, intron 61 of 94) L1ME4a|LINE|L1 122040 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 343-286 chr2 210301261 210301528 + 2 NA intron (NM_079422, intron 2 of 6) intron (NM_079422, intron 2 of 6) 2221 NM_079422 4632 Hs.187338 NM_079420 ENSG00000168530 MYL1 MLC1F|MLC3F|MYOFTA myosin light chain 1 protein-coding 316-473 chr6 13246712 13247012 + 2 NA intron (NM_001322308, intron 9 of 13) intron (NM_001322308, intron 9 of 13) 36580 NR_134859 100130357 Hs.484678 NM_001242698 LOC100130357 - uncharacterized LOC100130357 ncRNA 201-118 chr2 45865454 45865607 + 2 NA intron (NM_005400, intron 2 of 14) MLT1A1|LTR|ERVL-MaLR 213855 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 446-4 chr1 34491564 34491913 + 2 NA Intergenic L1PA11|LINE|L1 177956 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 201-89 chr15 66343402 66343589 + 2 NA intron (NM_001289986, intron 5 of 6) Charlie7|DNA|hAT-Charlie 3847 NR_004388 692149 NR_004388 ENSG00000252712 SCARNA14 U100 small Cajal body-specific RNA 14 ncRNA 497-293 chr8 133807318 133807661 + 2 NA Intergenic Intergenic -30137 NR_125422 101927798 Hs.615036 NR_125422 ENSG00000253165 LOC101927798 - uncharacterized LOC101927798 ncRNA 226-393 chrX 58221751 58221925 + 2 NA Intergenic ALR/Alpha|Satellite|centr -311205 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 298-344 chr4 163775943 163776141 + 2 NA intron (NM_001166373, intron 3 of 7) intron (NM_001166373, intron 3 of 7) -162508 NM_017923 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 361-205 chr2 24115864 24116184 + 2 NA intron (NM_199346, intron 4 of 4) intron (NM_199346, intron 4 of 4) 7310 NM_199346 375189 Hs.442718 NM_199346 ENSG00000176732 PFN4 - profilin family member 4 protein-coding 317-468 chr7 133489564 133489807 + 2 NA intron (NM_021807, intron 9 of 17) intron (NM_021807, intron 9 of 17) 198804 NR_106749 102465139 NR_106749 ENSG00000276137 MIR6133 hsa-mir-6133 microRNA 6133 ncRNA 466-133 chr2 104739083 104739365 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 18495 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 480-2 chr1 29980203 29980529 + 2 NA Intergenic L1ME1|LINE|L1 57246 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 243-283 chr3 83720135 83720350 + 2 NA Intergenic Intergenic 1149333 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 509-163 chr3 187830055 187830472 + 2 NA Intergenic L2a|LINE|L2 -84795 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 283-200 chr18 52976752 52977004 + 2 NA intron (NM_005215, intron 5 of 28) intron (NM_005215, intron 5 of 28) -260223 NR_130465 100616232 NR_130465 ENSG00000263872 MIR4528 - microRNA 4528 ncRNA 241-321 chr5 179390401 179390583 + 2 NA Intergenic L1ME2|LINE|L1 -45031 NM_021599 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 672-30 chr15 69875310 69875804 + 2 NA Intergenic Intergenic 40323 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 503-107 chr15 87392504 87392843 + 2 NA Intergenic Intergenic -184256 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 252-426 chr8 106831631 106831808 + 2 NA Intergenic Intergenic -61475 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 441-197 chr5 30209575 30209919 + 2 NA Intergenic Intergenic 329187 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 446-37 chr10 38486422 38486717 + 2 NA Intergenic Intergenic 58423 NR_024497 399744 Hs.497951 NM_001013665 LINC00999 - long intergenic non-protein coding RNA 999 ncRNA 432-93 chr16 59994605 59994957 + 2 NA intron (NR_110917, intron 1 of 3) intron (NR_110917, intron 1 of 3) 139428 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 267-137 chr16 62497358 62497549 + 2 NA Intergenic Intergenic -461015 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 296-431 chr7 10584259 10584434 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -118330 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 175-119 chr4 113936504 113936599 + 2 NA intron (NM_001354211, intron 4 of 6) intron (NM_001354211, intron 4 of 6) 43096 NM_001354210 79642 Hs.22895 NM_024590 ENSG00000180801 ARSJ ASJ arylsulfatase family member J protein-coding 456-102 chr15 36115912 36116303 + 2 NA Intergenic Intergenic 189251 NR_039735 100616293 NR_039735 ENSG00000265098 MIR4510 mir-4510 microRNA 4510 ncRNA 541-68 chr15 25490948 25491344 + 2 NA Intergenic AluSp|SINE|Alu -52090 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 369-113 chr14 54194573 54194834 + 2 NA Intergenic Eulor11|DNA|DNA -202165 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 430-218 chr4 95477497 95477764 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 71343 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 428-311 chr8 139149534 139149875 + 2 NA Intergenic Intergenic -235663 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 306-116 chr12 119486612 119486826 + 2 NA intron (NM_178499, intron 4 of 13) intron (NM_178499, intron 4 of 13) -107055 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 217-136 chr16 10162360 10162486 + 2 NA intron (NM_001134408, intron 2 of 13) MLT1B|LTR|ERVL-MaLR 19644 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 242-329 chr5 162794182 162794355 + 2 NA Intergenic Intergenic -643303 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 270-280 chr4 137751974 137752193 + 2 NA Intergenic Intergenic 206352 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 291-500 chr9 126132632 126132821 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 143189 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 321-83 chr10 127663103 127663400 + 2 NA Intergenic Intergenic -73934 NM_207426 399823 Hs.449674 NM_207426 ENSG00000186766 FOXI2 - forkhead box I2 protein-coding 321-116 chr11 125832101 125832408 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -1062 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 342-366 chr4 92286457 92286714 + 2 NA Intergenic L1MA5|LINE|L1 -9283 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 198-154 chr3 6405686 6405848 + 2 NA Intergenic L1MCa|LINE|L1 399682 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 280-153 chr16 65953628 65953819 + 2 NA Intergenic Intergenic -377423 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 252-297 chr4 63438870 63439089 + 2 NA Intergenic L1MB8|LINE|L1 970471 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 371-186 chr2 131416426 131416682 + 2 NA Intergenic Intergenic 13653 NR_036499 389043 Hs.586791 NR_036499 LINC01120 - long intergenic non-protein coding RNA 1120 ncRNA 289-87 chr11 95672959 95673177 + 2 NA Intergenic Intergenic 116714 NM_144664 143684 Hs.288304 NM_144664 ENSG00000077458 FAM76B - family with sequence similarity 76 member B protein-coding 318-369 chr3 118269337 118269576 + 2 NA Intergenic Intergenic -372312 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 337-352 chr3 62151430 62151741 + 2 NA intron (NM_002841, intron 6 of 29) intron (NM_002841, intron 6 of 29) 167362 NR_038283 100506994 Hs.656620 NR_038281 ENSG00000241472 PTPRG-AS1 - PTPRG antisense RNA 1 ncRNA 170-122 chr6 20893584 20893736 + 2 NA intron (NM_017774, intron 9 of 15) MIR|SINE|MIR 359203 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 195-211 chr6 18915503 18915666 + 2 NA Intergenic LTR82B|LTR|ERVL 264896 NR_110860 101928519 Hs.551771 NR_110860 LOC101928519 - uncharacterized LOC101928519 ncRNA 218-293 chr6 152851006 152851171 + 2 NA Intergenic Intergenic 100291 NM_003381 7432 Hs.53973 NM_003381 ENSG00000146469 VIP PHM27 vasoactive intestinal peptide protein-coding 476-193 chr4 38285793 38286132 + 2 NA Intergenic Intergenic -80952 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 247-203 chr2 85203854 85204045 + 2 NA intron (NM_031283, intron 3 of 11) intron (NM_031283, intron 3 of 11) -9703 NR_136323 102724579 Hs.669216 NR_136323 LOC102724579 - uncharacterized LOC102724579 ncRNA 203-212 chr7 9757451 9757616 + 2 NA Intergenic Intergenic 123263 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 393-186 chr2 211438362 211438682 + 2 NA intron (NM_001042599, intron 20 of 26) MIR|SINE|MIR 820951 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 502-36 chr10 78666647 78666976 + 2 NA Intergenic L1P4|LINE|L1 399469 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 523-81 chr14 76126860 76127271 + 2 NA Intergenic Intergenic -24820 NM_001322032 55668 Hs.410231 NM_017926 ENSG00000089916 GPATCH2L C14orf118 G-patch domain containing 2 like protein-coding 414-24 chr10 50439272 50439630 + 2 NA intron (NM_147156, intron 5 of 10) MIR3|SINE|MIR 184505 NM_147156 259230 Hs.654698 NM_147156 ENSG00000198964 SGMS1 MOB|MOB1|SMS1|TMEM23|hmob33 sphingomyelin synthase 1 protein-coding 425-108 chr17 13929689 13929994 + 2 NA Intergenic LTR49-int|LTR|ERV1 -94657 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 349-205 chr17 26868645 26868856 + 2 NA Intergenic (GAATG)n|Satellite|Satellite 220491 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 280-354 chr6 94178096 94178329 + 2 NA Intergenic Intergenic 459909 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 309-572 chr9 1418640 1418817 + 2 NA Intergenic Intergenic 367241 NR_163472 10655 Hs.59506 NM_006557 ENSG00000173253 DMRT2 - doublesex and mab-3 related transcription factor 2 protein-coding 271-2 chr1 5496632 5496826 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 366012 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 267-396 chr7 61934817 61934968 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1369164 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 507-63 chr12 20237075 20237490 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -109381 NR_146523 105369684 NR_146523 LINC02468 - long intergenic non-protein coding RNA 2468 ncRNA 159-18 chr12 1084499 1084604 + 2 NA intron (NR_027948, intron 3 of 19) intron (NR_027948, intron 3 of 19) 56803 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 342-505 chr8 37920320 37920654 + 2 NA Intergenic Tigger9b|DNA|TcMar-Tigger 19637 NM_152413 137362 Hs.380740 NM_152413 ENSG00000169154 GOT1L1 - glutamic-oxaloacetic transaminase 1 like 1 protein-coding 459-315 chr8 137264292 137264625 + 2 NA Intergenic L2|LINE|L2 149130 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 204-307 chr9 86590580 86590727 + 2 NA Intergenic Intergenic -236243 NM_024617 79670 Hs.597057 NM_024617 ENSG00000083223 TUT7 PAPD6|TENT3B|ZCCHC6 terminal uridylyl transferase 7 protein-coding 298-261 chr20 58765197 58765401 + 2 NA Intergenic Intergenic -8126 NR_134566 105372695 Hs.128204 NR_134566 LOC105372695 - uncharacterized LOC105372695 ncRNA 616-41 chr14 32961979 32962419 + 2 NA intron (NM_001165893, intron 1 of 10) intron (NM_001165893, intron 1 of 10) 23320 NM_022123 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 657-98 chr8 123618806 123619405 + 2 NA Intergenic MER89|LTR|ERV1 34696 NM_001081675 340359 Hs.450252 NM_001081675 ENSG00000175946 KLHL38 C8ORFK36 kelch like family member 38 protein-coding 287-74 chr10 108504122 108504293 + 2 NA Intergenic Intergenic -434914 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 363-122 chr13 74347903 74348254 + 2 NA Intergenic L1PA8|LINE|L1 71037 NR_144452 100288208 Hs.532467 NM_001013669 ENSG00000177596 LOC100288208 - uncharacterized LOC100288208 ncRNA 221-292 chr8 10252011 10252199 + 2 NA intron (NM_001199729, intron 4 of 6) intron (NM_001199729, intron 4 of 6) 156454 NM_001135671 4482 Hs.490981 NM_012331 ENSG00000175806 MSRA PMSR methionine sulfoxide reductase A protein-coding 307-105 chr12 61854173 61854432 + 2 NA intron (NM_178539, intron 2 of 4) HAL1|LINE|L1 338537 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 522-225 chr6 121491828 121492224 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 56380 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 238-397 chr8 129504995 129505164 + 2 NA intron (NR_130917, intron 1 of 3) L1MDa|LINE|L1 -20937 NR_037457 100500839 NR_037457 ENSG00000263763 MIR3686 - microRNA 3686 ncRNA 283-150 chr15 69906681 69906917 + 2 NA Intergenic Intergenic 71565 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 518-177 chr3 83926708 83927004 + 2 NA Intergenic L1MC4a|LINE|L1 942719 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 373-163 chr18 7404436 7404780 + 2 NA Intergenic L1MD1|LINE|L1 56398 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 291-426 chr8 5275156 5275373 + 2 NA Intergenic L1MDa|LINE|L1 -280350 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 339-169 chr14 97903545 97903877 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 74413 NR_152748 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 314-549 chr7 141841389 141841668 + 2 NA promoter-TSS (NM_001171951) promoter-TSS (NM_001171951) -43 NM_001370403 136242 Hs.98947 NM_001008270 ENSG00000165076 PRSS37 TRYX2 serine protease 37 protein-coding 271-288 chr3 197972244 197972507 + 2 NA intron (NM_033029, intron 1 of 15) L1M4a1|LINE|L1 12158 NR_026786 89782 Hs.518540 NM_033029 ENSG00000185621 LMLN GP63|INV|IX14|LMNL1|MSP leishmanolysin like peptidase protein-coding 293-118 chr14 60413861 60414037 + 2 NA Intergenic L1PA10|LINE|L1 72114 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 431-59 chr11 84569371 84569717 + 2 NA intron (NM_001351274, intron 5 of 26) L1M3b|LINE|L1 151398 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 260-65 chr10 112466199 112466399 + 2 NA intron (NM_001365712, intron 3 of 8) intron (NM_001365712, intron 3 of 8) -18696 NM_001351082 64429 Hs.196990 NM_022494 ENSG00000023041 ZDHHC6 DHHC-6|ZNF376 zinc finger DHHC-type containing 6 protein-coding 529-141 chr3 107933541 107933899 + 2 NA Intergenic L1MEg|LINE|L1 50515 NR_015394 285205 Hs.134882 NR_015394 ENSG00000240423 LINC00636 - long intergenic non-protein coding RNA 636 ncRNA 434-23 chr1 218148897 218149244 + 2 NA Intergenic L1ME3A|LINE|L1 105565 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 398-335 chr7 123514481 123514717 + 2 NA intron (NR_104245, intron 1 of 11) L1PB4|LINE|L1 18349 NM_001282855 154865 Hs.159650 NM_178827 ENSG00000164675 IQUB - IQ motif and ubiquitin domain containing protein-coding 419-19 chr1 174815053 174815398 + 2 NA intron (NM_001366446, intron 19 of 25) intron (NM_001366446, intron 19 of 25) 15487 NM_001366455 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 172-59 chr2 54364881 54364967 + 2 NA Intergenic L1MEd|LINE|L1 34040 NM_001369401 129852 Hs.732626 NM_173486 ENSG00000177994 C2orf73 - chromosome 2 open reading frame 73 protein-coding 254-62 chr11 83406765 83407006 + 2 NA Intergenic MIR|SINE|MIR -120478 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 344-132 chr14 50823028 50823225 + 2 NA intron (NM_016350, intron 2 of 28) intron (NM_016350, intron 2 of 28) 1329 NR_135258 105370489 Hs.569387 NR_135258 ENSG00000258843 LOC105370489 - uncharacterized LOC105370489 ncRNA 511-188 chr4 31906161 31906658 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -90970 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 369-150 chr16 60367594 60367901 + 2 NA Intergenic MER21C|LTR|ERVL -7954 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 334-4 chr1 38511824 38512058 + 2 NA Intergenic Intergenic 36745 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 372-15 chr1 75024025 75024257 + 2 NA Intergenic Intergenic -104293 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 630-132 chr7 78175803 78176312 + 2 NA intron (NM_001301128, intron 13 of 20) intron (NM_001301128, intron 13 of 20) -171185 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 226-267 chr5 3391182 3391363 + 2 NA Intergenic Intergenic -61544 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 307-116 chr13 26530081 26530268 + 2 NA Intergenic Intergenic -27509 NM_006646 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 257-303 chr4 67362244 67362440 + 2 NA Intergenic Intergenic 59658 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 419-11 chr1 79088677 79089043 + 2 NA Intergenic Intergenic -82130 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 370-349 chr4 67056449 67056725 + 2 NA Intergenic Intergenic 365413 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 275-95 chr13 90001535 90001788 + 2 NA Intergenic MER4D|LTR|ERV1 118056 NR_047489 100874187 Hs.564526 NR_047489 ENSG00000261446 LINC00559 - long intergenic non-protein coding RNA 559 ncRNA 332-477 chr7 34782480 34782766 + 2 NA intron (NM_207172, intron 3 of 8) L1M4|LINE|L1 -24351 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 515-57 chr13 21894499 21894942 + 2 NA Intergenic Intergenic -16560 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 264-281 chr3 156928093 156928317 + 2 NA intron (NM_001004316, intron 5 of 12) L1MC1|LINE|L1 101852 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 451-66 chr14 58835642 58836009 + 2 NA intron (NR_110547, intron 1 of 5) intron (NR_110547, intron 1 of 5) 7537 NR_110547 102723742 Hs.232734 NR_110547 ENSG00000258583 LINC01500 - long intergenic non-protein coding RNA 1500 ncRNA 224-137 chr2 45663867 45664019 + 2 NA intron (NM_005400, intron 1 of 14) intron (NM_005400, intron 1 of 14) 12268 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 408-335 chr8 84950633 84950887 + 2 NA Intergenic LTR108e_Mam|LTR|ERVL -156478 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 237-324 chr6 50876157 50876341 + 2 NA Intergenic LTR16E2|LTR|ERVL 57378 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 319-9 chr1 74326414 74326669 + 2 NA intron (NM_015978, intron 5 of 24) intron (NM_015978, intron 5 of 24) 91154 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 322-194 chr16 78454035 78454311 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 354519 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 519-54 chr13 18965998 18966436 + 2 NA Intergenic L1MC4a|LINE|L1 -42042 NR_026852 348021 Hs.314114 NR_026852 ENSG00000232685 LINC00442 - long intergenic non-protein coding RNA 442 ncRNA 575-134 chr4 31896252 31896770 + 2 NA Intergenic Intergenic -100868 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 492-291 chrX 95267264 95267607 + 2 NA Intergenic Intergenic -204209 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 567-67 chr16 75165582 75166003 + 2 NA intron (NM_001318471, intron 3 of 4) L1MEg|LINE|L1 16741 NM_001318475 162239 Hs.388813 NM_153688 ENSG00000184517 ZFP1 ZNF475 ZFP1 zinc finger protein protein-coding 371-133 chr16 63116280 63116557 + 2 NA Intergenic Intergenic -1079980 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 342-294 chr21 20346522 20346818 + 2 NA Intergenic Intergenic -87985 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 377-332 chr5 117900983 117901313 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 170787 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 203-30 chr10 78906478 78906679 + 2 NA Intergenic MamRep605|LTR?|LTR? 160870 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 456-91 chr14 61324656 61324924 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 3347 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 335-362 chr3 118565062 118565328 + 2 NA intron (NR_135547, intron 2 of 3) L1ME2|LINE|L1 -76573 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 461-159 chr21 24227763 24228131 + 2 NA Intergenic L1MA9|LINE|L1 93430 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 260-105 chr12 64942746 64942942 + 2 NA intron (NR_146276, intron 3 of 3) intron (NR_146276, intron 3 of 3) 49447 NR_146276 109729131 Hs.577553 NR_146276 ENSG00000248995 LINC02231 - long intergenic non-protein coding RNA 2231 ncRNA 382-295 chr4 45062353 45062669 + 2 NA Intergenic L1PA7|LINE|L1 -335877 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 308-73 chr10 123645378 123645558 + 2 NA Intergenic Intergenic -20887 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 368-68 chr10 129122203 129122497 + 2 NA Intergenic Intergenic 209517 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 315-452 chr7 114782085 114782387 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 128891 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 609-38 chr16 80219062 80219414 + 2 NA intron (NR_120307, intron 2 of 5) THE1B|LTR|ERVL-MaLR -321496 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 321-295 chr2 122028224 122028484 + 2 NA Intergenic Intergenic 272703 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 354-389 chr5 164132075 164132325 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 335202 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 235-268 chr4 135779727 135779893 + 2 NA Intergenic L1M4a2|LINE|L1 108283 NR_103762 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 342-476 chr7 10613400 10613671 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -89141 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 412-254 chr5 36647801 36648172 + 2 NA intron (NM_004172, intron 3 of 9) intron (NM_004172, intron 3 of 9) 41380 NM_004172 6507 Hs.481918 NM_004172 ENSG00000079215 SLC1A3 EA6|EAAT1|GLAST|GLAST1 solute carrier family 1 member 3 protein-coding 267-375 chr6 94936481 94936670 + 2 NA Intergenic L1M1|LINE|L1 640876 NR_047502 101927288 Hs.616643 NR_047502 ENSG00000261366 MANEA-DT MANEA-AS1 MANEA divergent transcript ncRNA 391-184 chr2 114435416 114435760 + 2 NA Intergenic Intergenic -7053 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 444-208 chr5 128050581 128050941 + 2 NA intron (NR_152812, intron 4 of 4) MLT1F|LTR|ERVL-MaLR 32414 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 393-338 chr7 106162078 106162307 + 2 NA Intergenic L1MEd|LINE|L1 -49616 NM_006754 6856 Hs.80919 NM_006754 ENSG00000008282 SYPL1 H-SP1|SYPL synaptophysin like 1 protein-coding 234-25 chr1 236134068 236134252 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -8379 NM_003272 7107 Hs.498160 NM_003272 ENSG00000077585 GPR137B TM7SF1 G protein-coupled receptor 137B protein-coding 423-228 chr5 87755382 87755683 + 2 NA Intergenic Intergenic 93490 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 375-334 chr5 124312723 124313074 + 2 NA intron (NR_125774, intron 4 of 5) (TTTC)n|Simple_repeat|Simple_repeat 125622 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 476-31 chr10 83071704 83072008 + 2 NA Intergenic Intergenic 605233 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 321-35 chr1 225275581 225275814 + 2 NA intron (NM_001367479, intron 52 of 85) Charlie4a|DNA|hAT-Charlie 152341 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 401-168 chr2 116158477 116158829 + 2 NA Intergenic AluSc5|SINE|Alu 814838 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 308-18 chr1 82879339 82879534 + 2 NA Intergenic Intergenic -23747 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 347-517 chr8 101869391 101869571 + 2 NA intron (NM_001040628, intron 4 of 7) MLT1D|LTR|ERVL-MaLR -78512 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 321-30 chr1 194469577 194469763 + 2 NA Intergenic ERVL-int|LTR|ERVL 1164925 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 367-365 chr5 90872727 90872960 + 2 NA intron (NR_003149, intron 83 of 89) intron (NR_003149, intron 83 of 89) 314046 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 274-378 chr8 57784276 57784471 + 2 NA Intergenic Intergenic 38224 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 285-34 chr10 37921204 37921362 + 2 NA Intergenic L1PA15|LINE|L1 54697 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 500-43 chr10 129784984 129785424 + 2 NA Intergenic Intergenic 58170 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 481-270 chr6 162834665 162835063 + 2 NA intron (NM_001080379, intron 2 of 4) intron (NM_001080379, intron 2 of 4) 106894 NM_001080379 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 316-26 chr1 153162608 153162839 + 2 NA Intergenic L2c|LINE|L2 -11795 NR_110685 101928009 Hs.385720 NR_110685 ENSG00000229699 LOC101928009 - uncharacterized LOC101928009 ncRNA 298-432 chr7 49789290 49789523 + 2 NA intron (NR_136188, intron 1 of 3) intron (NR_136188, intron 1 of 3) 14073 NR_136188 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 623-122 chr7 94638385 94638770 + 2 NA intron (NM_001346717, intron 1 of 9) intron (NM_001346717, intron 1 of 9) 17556 NM_001362809 8910 Hs.371199 NM_003919 ENSG00000127990 SGCE DYT11|ESG|epsilon-SG sarcoglycan epsilon protein-coding 493-98 chr16 35516190 35516678 + 2 NA Intergenic L1MB2|LINE|L1 -9264 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 201-223 chr6 153801070 153801235 + 2 NA Intergenic L1MEi|LINE|L1 -209344 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 357-10 chr1 96630418 96630724 + 2 NA Intergenic L1ME3|LINE|L1 -91034 NM_021190 58155 Hs.596061 NM_021190 ENSG00000117569 PTBP2 PTBLP|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 337-32 chr1 218280193 218280435 + 2 NA Intergenic Intergenic -4979 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 512-148 chr20 51732789 51733271 + 2 NA intron (NM_006045, intron 1 of 27) intron (NM_006045, intron 1 of 27) 35360 NM_006045 10079 Hs.649234 NM_006045 ENSG00000054793 ATP9A ATPIIA ATPase phospholipid transporting 9A (putative) protein-coding 222-372 chr8 114222412 114222596 + 2 NA Intergenic Intergenic -785565 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 471-219 chr5 147648257 147648659 + 2 NA exon (NM_001270941, exon 5 of 22) exon (NM_001270941, exon 5 of 22) 88464 NR_038902 153469 Hs.184323 NR_038902 ENSG00000280780 JAKMIP2-AS1 - JAKMIP2 antisense RNA 1 ncRNA 299-326 chr4 63378677 63378900 + 2 NA Intergenic Intergenic 1030662 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 219-58 chr11 110676885 110677045 + 2 NA intron (NM_020809, intron 3 of 15) intron (NM_020809, intron 3 of 15) 34860 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 345-431 chr5 108760227 108760546 + 2 NA intron (NR_146155, intron 1 of 19) Tigger1|DNA|TcMar-Tigger 11438 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 290-57 chr10 81718218 81718375 + 2 NA Intergenic Intergenic -156898 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 383-109 chr14 53648878 53649214 + 2 NA Intergenic L1M4c|LINE|L1 299438 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 386-365 chr8 135791782 135792108 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger 334489 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 298-507 chr9 107661544 107661741 + 2 NA Intergenic MIRb|SINE|MIR -171873 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 223-48 chr11 26918115 26918309 + 2 NA Intergenic Intergenic -75900 NM_203371 387758 Hs.712718 NM_203371 ENSG00000176971 FIBIN - fin bud initiation factor homolog protein-coding 520-107 chr16 51201961 51202312 + 2 NA intron (NR_039672, intron 5 of 6) intron (NR_039672, intron 5 of 6) -50864 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 294-347 chr4 121234141 121234365 + 2 NA Intergenic Intergenic -6770 NM_001244764 79931 Hs.208206 NM_024873 ENSG00000050730 TNIP3 ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 397-50 chr11 60970106 60970339 + 2 NA Intergenic L1MEd|LINE|L1 -1458 NM_006725 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 348-259 chr20 11591339 11591548 + 2 NA Intergenic L1M5|LINE|L1 279272 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 265-426 chrX 142697200 142697407 + 2 NA Intergenic L1MA9|LINE|L1 -328625 NM_001009613 441525 Hs.535082 NM_001009613 ENSG00000189326 SPANXN4 CT11.9 SPANX family member N4 protein-coding 307-271 chr20 15086031 15086262 + 2 NA intron (NM_001351663, intron 5 of 17) MER5A|DNA|hAT-Charlie -110694 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 252-67 chr11 40606440 40606682 + 2 NA intron (NM_020929, intron 2 of 4) L1MB1|LINE|L1 -313431 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 409-296 chr8 87084220 87084614 + 2 NA intron (NM_173538, intron 4 of 10) L1MEf|LINE|L1 218002 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 317-215 chr2 23186005 23186313 + 2 NA Intergenic Intergenic -199020 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 260-305 chr4 52253408 52253578 + 2 NA Intergenic MER72|LTR|ERV1 202189 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 267-181 chr2 52633594 52633781 + 2 NA Intergenic L1M5|LINE|L1 68928 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 403-113 chr15 53023529 53023894 + 2 NA Intergenic L1ME3B|LINE|L1 -92654 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 212-207 chr3 35853100 35853282 + 2 NA Intergenic L1M4|LINE|L1 108715 NR_029824 406916 NR_029824 ENSG00000207625 MIR128-2 MIR128B|MIRN128-2|MIRN128B|mir-128-2|mir-128b microRNA 128-2 ncRNA 339-184 chr15 94562687 94562974 + 2 NA Intergenic Intergenic 206900 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 410-41 chr10 90246002 90246298 + 2 NA Intergenic Intergenic -288777 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 654-8 chr1 182099703 182100241 + 2 NA Intergenic AluSz6|SINE|Alu -38260 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 229-403 chr8 132545815 132545982 + 2 NA Intergenic L1M5|LINE|L1 15581 NR_026684 93668 Hs.545218 NR_026684 ENSG00000253521 HPYR1 HPRG1|LINC00027|NCRNA00027 Helicobacter pylori responsive 1 ncRNA 293-64 chr11 78517306 78517539 + 2 NA intron (NM_024678, intron 6 of 13) L2c|LINE|L2 -15754 NR_120566 101928896 Hs.659055 NR_120566 ENSG00000255084 LOC101928896 - uncharacterized LOC101928896 ncRNA 280-215 chr2 144324876 144325085 + 2 NA intron (NM_001354351, intron 1 of 15) intron (NM_001354351, intron 1 of 15) 7291 NM_001354355 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 267-107 chr14 47726956 47727113 + 2 NA Intergenic AluSz6|SINE|Alu 34070 NR_037503 100500919 NR_037503 ENSG00000263945 MIR548Y - microRNA 548y ncRNA 362-425 chr8 34375527 34375769 + 2 NA Intergenic Intergenic -408273 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 281-178 chr18 51303559 51303735 + 2 NA Intergenic (TGC)n|Simple_repeat|Simple_repeat -88395 NR_040075 100287225 Hs.448920 NR_040074 ENSG00000227115 LINC01630 - long intergenic non-protein coding RNA 1630 ncRNA 411-96 chr14 98151389 98151740 + 2 NA Intergenic Intergenic -173440 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 376-93 chr13 83405058 83405310 + 2 NA Intergenic Intergenic 477209 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 424-58 chr12 129503768 129504190 + 2 NA intron (NM_133448, intron 3 of 8) intron (NM_133448, intron 3 of 8) 295378 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 176-147 chr8 126689885 126690031 + 2 NA Intergenic MIR3|SINE|MIR -131480 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 128-42 chr3 78449048 78449139 + 2 NA Intergenic Intergenic -400130 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 175-32 chr11 32094320 32094486 + 2 NA intron (NM_002901, intron 1 of 5) MER102a|DNA|hAT-Charlie 3329 NM_002901 5954 Hs.97887 NM_002901 ENSG00000049449 RCN1 HEL-S-84|PIG20|RCAL|RCN reticulocalbin 1 protein-coding 398-222 chr3 160260667 160261006 + 2 NA intron (NM_001190242, intron 18 of 18) L2c|LINE|L2 35200 NM_001168214 401097 Hs.729755 NM_001168214 ENSG00000180044 C3orf80 - chromosome 3 open reading frame 80 protein-coding 304-84 chr11 80863670 80863929 + 2 NA Intergenic Intergenic -100996 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 337-437 chr5 29294120 29294357 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR 101738 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 364-47 chr10 19935813 19936034 + 2 NA intron (NM_032812, intron 1 of 13) intron (NM_032812, intron 1 of 13) 119491 NM_001282736 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 430-251 chr5 119789698 119789969 + 2 NA Intergenic Intergenic 160274 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 717-31 chr15 72891008 72891546 + 2 NA Intergenic Intergenic -107519 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 471-276 chr8 135357056 135357463 + 2 NA Intergenic Intergenic -100197 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 142-6 chr10 16993114 16993239 + 2 NA intron (NM_001081, intron 28 of 66) intron (NM_001081, intron 28 of 66) 136641 NM_001081 8029 Hs.166206 NM_001081 ENSG00000107611 CUBN IFCR|MGA1|gp280 cubilin protein-coding 340-79 chr11 81179801 81180079 + 2 NA Intergenic MER41B|LTR|ERV1 -417137 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 649-48 chr2 54278252 54278848 + 2 NA intron (NM_001320589, intron 4 of 4) MER117|DNA|hAT-Charlie -22321 NM_001003937 388951 Hs.620508 NM_001003937 ENSG00000178021 TSPYL6 - TSPY like 6 protein-coding 424-4 chr1 59129819 59130183 + 2 NA Intergenic Intergenic 16806 NR_027120 729467 Hs.662291 NR_027120 ENSG00000224609 HSD52 - uncharacterized LOC729467 ncRNA 364-172 chr17 68310722 68310956 + 2 NA intron (NM_001352899, intron 2 of 12) intron (NM_001352899, intron 2 of 12) 18704 NM_001352902 22901 Hs.437249 NM_014960 ENSG00000141337 ARSG USH4 arylsulfatase G protein-coding 267-33 chr1 235572016 235572241 + 2 NA intron (NM_004485, intron 2 of 2) Tigger3a|DNA|TcMar-Tigger -67676 NM_001277155 148789 Hs.498143 NM_152490 ENSG00000162885 B3GALNT2 B3GalNAc-T2|MDDGA11 beta-1,3-N-acetylgalactosaminyltransferase 2 protein-coding 191-49 chr13 111996369 111996491 + 2 NA intron (NR_120392, intron 1 of 3) intron (NR_120392, intron 1 of 3) 24120 NR_120392 100505996 Hs.654853 NR_120392 ENSG00000224243 SOX1-OT LINC00403 SOX1 overlapping transcript ncRNA 390-31 chr10 25953169 25953397 + 2 NA intron (NM_001368265, intron 3 of 7) (T)n|Simple_repeat|Simple_repeat 19054 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 317-372 chr5 6985662 6985896 + 2 NA Intergenic Intergenic -157858 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 277-407 chr8 72460349 72460611 + 2 NA Intergenic L1MCa|LINE|L1 -76745 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 340-223 chr19 37150905 37151183 + 2 NA 3' UTR (NM_152655, exon 6 of 6) 3' UTR (NM_152655, exon 6 of 6) 21392 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 303-106 chr13 56832331 56832562 + 2 NA Intergenic Intergenic -308472 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 194-230 chr9 137521909 137522070 + 2 NA intron (NM_001098537, intron 9 of 34) L1MD3|LINE|L1 28413 NM_152286 375775 Hs.294147 NM_152286 ENSG00000130653 PNPLA7 C9orf111|NTE-R1|NTEL1 patatin like phospholipase domain containing 7 protein-coding 389-77 chr12 33320875 33321215 + 2 NA Intergenic Intergenic 118774 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 459-308 chr8 130421510 130421904 + 2 NA intron (NM_001362925, intron 1 of 29) MLT1J2|LTR|ERVL-MaLR 21953 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 377-431 chr9 113054806 113055018 + 2 NA intron (NM_001282515, intron 1 of 3) L2a|LINE|L2 1812 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 310-285 chr20 343351 343560 + 2 NA Intergenic Intergenic -3271 NR_136649 80023 Hs.416024 NM_024958 ENSG00000125841 NRSN2 C20orf98|dJ1103G7.6 neurensin 2 protein-coding 351-142 chr14 89115866 89116042 + 2 NA Intergenic Intergenic 291303 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 479-79 chr16 85978013 85978259 + 2 NA Intergenic Intergenic 59789 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 646-136 chr9 30167164 30167532 + 2 NA Intergenic L1M2|LINE|L1 241106 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 318-42 chr1 218891715 218891925 + 2 NA intron (NR_031644, intron 6 of 6) intron (NR_031644, intron 6 of 6) 26691 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 327-408 chr5 97530299 97530535 + 2 NA intron (NR_105028, intron 2 of 3) intron (NR_105028, intron 2 of 3) 25721 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 368-342 chr4 161360281 161360492 + 2 NA Intergenic Intergenic -662347 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 300-117 chr14 78516674 78516913 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 113074 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 311-117 chr13 53455307 53455550 + 2 NA Intergenic Intergenic -303528 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 152-20 chr12 48052602 48052709 + 2 NA intron (NR_051992, intron 14 of 18) intron (NR_051992, intron 14 of 18) -48179 NM_001844 1280 Hs.408182 NM_001844 ENSG00000139219 COL2A1 ANFH|AOM|COL11A3|SEDC|STL1 collagen type II alpha 1 chain protein-coding 414-214 chr3 110730696 110731051 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 339086 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 507-266 chr8 134434925 134435327 + 2 NA Intergenic Intergenic -162945 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 491-272 chr9 14000702 14001074 + 2 NA Intergenic L1PA4|LINE|L1 72917 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 258-297 chr4 91819081 91819304 + 2 NA Intergenic L1MB1|LINE|L1 458110 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 384-96 chr13 68117524 68117748 + 2 NA Intergenic LTR40a|LTR|ERVL 745249 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 518-94 chr15 86147329 86147717 + 2 NA intron (NM_152336, intron 3 of 24) L1PA6|LINE|L1 -30806 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 194-156 chr5 9926940 9927130 + 2 NA Intergenic Intergenic -23211 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 411-49 chr11 3633436 3633787 + 2 NA intron (NR_002720, intron 2 of 6) L2c|LINE|L2 7151 NR_002720 7221 Hs.131910 NR_002720 ENSG00000182048 TRPC2 - transient receptor potential cation channel subfamily C member 2 (pseudogene) pseudo 675-13 chr10 65878399 65878887 + 2 NA Intergenic Intergenic 307218 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 395-86 chr13 91009054 91009274 + 2 NA Intergenic Intergenic 80453 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 454-278 chr6 118634784 118635178 + 2 NA intron (NM_001178035, intron 2 of 13) intron (NM_001178035, intron 2 of 13) 16610 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 242-434 chr9 75001646 75001862 + 2 NA intron (NM_001320497, intron 3 of 7) intron (NM_001320497, intron 3 of 7) 25397 NM_001320497 138199 Hs.567688 NM_152420 ENSG00000156017 CARNMT1 C9orf41|UPF0586 carnosine N-methyltransferase 1 protein-coding 335-333 chr3 7759383 7759647 + 2 NA Intergenic L3|LINE|CR1 -224231 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 411-32 chr10 80763495 80763751 + 2 NA Intergenic MLT2D|LTR|ERVL 113826 NR_155749 105378386 Hs.531456 NR_155749 LINC02655 - long intergenic non-protein coding RNA 2655 ncRNA 317-249 chr2 132980389 132980681 + 2 NA intron (NM_207481, intron 7 of 17) MIRc|SINE|MIR 64978 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 280-19 chr1 106829418 106829674 + 2 NA intron (NR_147165, intron 2 of 2) L1MA9|LINE|L1 11307 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 335-344 chr3 48383920 48384149 + 2 NA intron (NM_207102, intron 10 of 10) L1MD|LINE|L1 11815 NM_001159929 285231 Hs.288793 NM_207102 ENSG00000164049 FBXW12 FBW12|FBXO12|FBXO35 F-box and WD repeat domain containing 12 protein-coding 279-145 chr18 12555207 12555386 + 2 NA intron (NM_020148, intron 2 of 15) L1MA3|LINE|L1 101436 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 342-348 chr4 17191845 17192157 + 2 NA Intergenic Intergenic -5944 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 318-69 chr10 65695153 65695396 + 2 NA intron (NR_120647, intron 4 of 5) intron (NR_120647, intron 4 of 5) 123849 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 291-444 chr8 74886887 74887162 + 2 NA Intergenic Intergenic 62490 NM_015886 51050 Hs.98558 NM_015886 ENSG00000137558 PI15 CRISP8|P24TI|P25TI peptidase inhibitor 15 protein-coding 271-19 chr1 172786984 172787207 + 2 NA Intergenic L1MA2|LINE|L1 127992 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 531-168 chr4 14753659 14753978 + 2 NA intron (NR_126435, intron 2 of 6) THE1C|LTR|ERVL-MaLR 134351 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 526-153 chr20 51081676 51082148 + 2 NA Intergenic AluSx1|SINE|Alu -58805 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 284-443 chr9 90492268 90492477 + 2 NA intron (NR_034157, intron 5 of 5) (TCCC)n|Simple_repeat|Simple_repeat -58883 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 172-61 chr2 117207254 117207345 + 2 NA Intergenic L1MD|LINE|L1 -607392 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 383-212 chr2 201238583 201238811 + 2 NA intron (NM_033355, intron 2 of 9) AluSz|SINE|Alu 5234 NM_001080124 841 Hs.599762 NM_001228 ENSG00000064012 CASP8 ALPS2B|CAP4|Casp-8|FLICE|MACH|MCH5 caspase 8 protein-coding 412-130 chr18 6761927 6762174 + 2 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -32188 NR_134645 101927168 Hs.242240 NR_134645 LOC101927168 - uncharacterized LOC101927168 ncRNA 308-487 chr8 64795555 64795772 + 2 NA intron (NM_004820, intron 1 of 5) L2|LINE|L2 3074 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 217-242 chr3 176478490 176478687 + 2 NA Intergenic Intergenic -36515 NR_107017 102465858 NR_107017 ENSG00000283333 MIR7977 hsa-mir-7977 microRNA 7977 ncRNA 254-113 chr14 56714392 56714548 + 2 NA Intergenic Intergenic 91197 NR_073036 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 266-346 chr5 141308294 141308462 + 2 NA Intergenic Intergenic -4329 NM_031947 83884 Hs.97647 NM_031947 ENSG00000120329 SLC25A2 ORC2|ORNT2 solute carrier family 25 member 2 protein-coding 187-141 chr5 114337982 114338091 + 2 NA Intergenic Intergenic -24034 NM_021614 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 436-203 chr4 41409337 41409749 + 2 NA intron (NM_001289122, intron 1 of 25) intron (NM_001289122, intron 1 of 25) 48736 NM_001330792 22998 Hs.335163 NM_014988 ENSG00000064042 LIMCH1 LIMCH1A|LMO7B LIM and calponin homology domains 1 protein-coding 659-55 chr2 114938149 114938677 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -104865 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 348-522 chr8 82897621 82897918 + 2 NA Intergenic L1PB1|LINE|L1 -14335 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 412-68 chr12 29388464 29388773 + 2 NA promoter-TSS (NR_073170) promoter-TSS (NR_073170) -676 NR_073171 101055625 Hs.569158 NR_073170 ENSG00000257599 OVCH1-AS1 - OVCH1 antisense RNA 1 ncRNA 376-421 chr9 26788629 26788867 + 2 NA Intergenic Intergenic 104054 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 254-14 chr1 115422799 115422989 + 2 NA Intergenic L1MD1|LINE|L1 -84658 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 304-95 chr11 133534012 133534192 + 2 NA Intergenic Intergenic -1601 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 288-263 chr3 72049359 72049636 + 2 NA intron (NR_104116, intron 6 of 6) intron (NR_104116, intron 6 of 6) 50958 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 371-288 chr4 117231496 117231791 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 128996 NR_147151 105377389 Hs.129401 NR_147151 ENSG00000224932 LINC02262 - long intergenic non-protein coding RNA 2262 ncRNA 381-89 chr12 115102741 115102935 + 2 NA Intergenic Intergenic -418663 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 468-173 chr20 39350306 39350643 + 2 NA Intergenic L1MA9|LINE|L1 -125726 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 529-45 chr12 37710604 37711126 + 2 NA Intergenic ALR/Alpha|Satellite|centr -605909 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 679-16 chr10 77322063 77322519 + 2 NA intron (NM_001322838, intron 1 of 29) intron (NM_001322838, intron 1 of 29) 28470 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 312-260 chr2 129332697 129332915 + 2 NA Intergenic L1M5|LINE|L1 -58915 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 483-258 chr8 55864552 55864912 + 2 NA Intergenic Intergenic -15103 NM_001111097 4067 Hs.491767 NM_002350 ENSG00000254087 LYN JTK8|p53Lyn|p56Lyn LYN proto-oncogene, Src family tyrosine kinase protein-coding 304-83 chr11 80815705 80815933 + 2 NA Intergenic Intergenic -53016 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 630-114 chr6 4828147 4828487 + 2 NA intron (NM_001368127, intron 1 of 5) AluJo|SINE|Alu -7781 NM_001143970 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 327-486 chr8 71151880 71152195 + 2 NA Intergenic L1MC1|LINE|L1 204669 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 311-4 chr1 49500887 49501137 + 2 NA intron (NR_136623, intron 2 of 12) L1PBa|LINE|L1 -28927 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 475-67 chr12 128015088 128015347 + 2 NA Intergenic L1ME2|LINE|L1 11949 NR_131985 105370070 NR_131985 ENSG00000256643 LINC02441 CRAT8 long intergenic non-protein coding RNA 2441 ncRNA 339-34 chr1 175795386 175795633 + 2 NA Intergenic Intergenic -51914 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 364-441 chr8 79304889 79305115 + 2 NA Intergenic Intergenic -27186 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 216-47 chr10 117640370 117640583 + 2 NA Intergenic L1MC4|LINE|L1 -95408 NR_002791 196047 Hs.312592 NR_002791 ENSG00000229847 EMX2OS EMX2-AS1|NCRNA00045 EMX2 opposite strand/antisense RNA ncRNA 165-126 chr8 22768561 22768650 + 2 NA intron (NM_001363233, intron 4 of 6) intron (NM_001363233, intron 4 of 6) -75125 NM_004430 1960 Hs.534313 NM_004430 ENSG00000179388 EGR3 EGR-3|PILOT early growth response 3 protein-coding 368-353 chr5 18214659 18214924 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 407517 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 436-265 chr6 50241156 50241581 + 2 NA Intergenic MER52A|LTR|ERV1 -191439 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 384-278 chr5 2025897 2026097 + 2 NA Intergenic Intergenic 138666 NR_109912 101929081 Hs.519180 NR_109912 ENSG00000249326 CTD-2194D22.4 - uncharacterized LOC101929081 ncRNA 196-170 chr3 65314791 65314950 + 2 NA Intergenic Intergenic -578946 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 185-160 chr5 41572192 41572349 + 2 NA Intergenic Intergenic -61669 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 293-313 chr4 113791097 113791292 + 2 NA Intergenic L1MA4|LINE|L1 -29267 NM_172129 817 Hs.144114 NM_001221 ENSG00000145349 CAMK2D CAMKD calcium/calmodulin dependent protein kinase II delta protein-coding 418-144 chr22 24928813 24929168 + 2 NA Intergenic Intergenic 17705 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 328-232 chr19 28404827 28405015 + 2 NA Intergenic MER4C|LTR|ERV1 -201767 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 270-272 chr4 92512624 92512869 + 2 NA intron (NM_001286838, intron 1 of 14) intron (NM_001286838, intron 1 of 14) 208347 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 207-108 chr18 359062 359182 + 2 NA intron (NM_130386, intron 2 of 9) intron (NM_130386, intron 2 of 9) -91075 NM_005131 9984 Hs.712543 NM_005131 ENSG00000079134 THOC1 HPR1|P84|P84N5 THO complex 1 protein-coding 587-90 chr20 57078647 57079061 + 2 NA Intergenic L1M3|LINE|L1 -134842 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 329-226 chr18 1451948 1452193 + 2 NA Intergenic L1MA2|LINE|L1 -92441 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 222-218 chr21 21194781 21194949 + 2 NA intron (NM_001352597, intron 1 of 10) L1MA9|LINE|L1 47703 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 343-143 chr14 61386255 61386444 + 2 NA intron (NM_006255, intron 1 of 13) intron (NM_006255, intron 1 of 13) 64906 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 329-222 chr17 72315192 72315463 + 2 NA Intergenic L1MC3|LINE|L1 -27484 NR_135222 146795 Hs.651743 NR_135222 ENSG00000264026 LINC02003 - long intergenic non-protein coding RNA 2003 ncRNA 152-84 chr6 124168409 124168559 + 2 NA intron (NM_001300737, intron 2 of 7) intron (NM_001300737, intron 2 of 7) -114521 NM_001300740 154215 Hs.656604 NM_153355 ENSG00000188580 NKAIN2 FAM77B|NKAIP2|TCBA|TCBA1 sodium/potassium transporting ATPase interacting 2 protein-coding 487-39 chr10 62494548 62494969 + 2 NA intron (NM_199451, intron 4 of 7) L1PA8|LINE|L1 -25690 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 439-238 chr5 173483130 173483415 + 2 NA Intergenic Intergenic -96362 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 382-347 chr5 164896746 164897081 + 2 NA Intergenic Intergenic 426634 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 208-70 chr13 72672474 72672636 + 2 NA Intergenic MIR|SINE|MIR 55074 NM_001071775 440145 Hs.28465 NM_001071775 ENSG00000204899 MZT1 C13orf37|MOZART1 mitotic spindle organizing protein 1 protein-coding 361-311 chr4 343866 344049 + 2 NA intron (NM_003441, intron 2 of 3) intron (NM_003441, intron 2 of 3) 6143 NM_003441 7700 Hs.654355 NM_003441 ENSG00000131127 ZNF141 D4S90|pHZ-44 zinc finger protein 141 protein-coding 387-406 chrX 98709991 98710370 + 2 NA Intergenic L1PREC2|LINE|L1 -1145645 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 271-431 chr8 55039224 55039374 + 2 NA Intergenic L1ME2|LINE|L1 -62729 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 767-34 chr3 66162901 66163338 + 2 NA intron (NM_173471, intron 1 of 10) intron (NM_173471, intron 1 of 10) 29509 NM_173471 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 335-432 chr5 114730193 114730401 + 2 NA intron (NR_130785, intron 1 of 12) intron (NR_130785, intron 1 of 12) 43116 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 266-144 chr16 78908256 78908418 + 2 NA intron (NM_001291997, intron 7 of 7) AluSx1|SINE|Alu 692400 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 170-137 chr8 81332198 81332309 + 2 NA Intergenic Intergenic 51717 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 393-358 chr8 90157390 90157691 + 2 NA Intergenic Intergenic -63948 NR_051989 100874052 Hs.571514 NR_051989 ENSG00000253394 LINC00534 - long intergenic non-protein coding RNA 534 ncRNA 231-243 chr3 193492906 193493048 + 2 NA exon (NM_032279, exon 5 of 30) exon (NM_032279, exon 5 of 30) -60236 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 717-57 chr3 97318828 97319328 + 2 NA intron (NM_001080448, intron 5 of 17) L3b|LINE|CR1 -120529 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 250-238 chr20 20940225 20940397 + 2 NA Intergenic LTR16E1|LTR|ERVL 166047 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 231-185 chr2 184678805 184678981 + 2 NA intron (NM_194250, intron 1 of 3) L3|LINE|CR1 80364 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 263-191 chr2 34343478 34343694 + 2 NA Intergenic Intergenic 276360 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 557-74 chr18 7913379 7913749 + 2 NA intron (NM_002845, intron 4 of 30) L1MB8|LINE|L1 346248 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 219-205 chr20 39888081 39888255 + 2 NA Intergenic Intergenic -116293 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 590-13 chr10 12310909 12311465 + 2 NA Intergenic Intergenic -38360 NM_020397 57118 Hs.600547 NM_020397 ENSG00000183049 CAMK1D CKLiK|CaM-K1|CaMKID calcium/calmodulin dependent protein kinase ID protein-coding 409-240 chr5 13934538 13934822 + 2 NA intron (NM_001369, intron 1 of 78) intron (NM_001369, intron 1 of 78) 9800 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 365-384 chr7 104465034 104465364 + 2 NA intron (NM_199000, intron 1 of 2) THE1C-int|LTR|ERVL-MaLR 136543 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 206-210 chr5 79127079 79127278 + 2 NA intron (NM_001713, intron 6 of 7) MLT1F|LTR|ERVL-MaLR 15369 NM_001713 635 Hs.80756 NM_001713 ENSG00000145692 BHMT BHMT1|HEL-S-61p betaine--homocysteine S-methyltransferase protein-coding 564-116 chr21 45968666 45969213 + 2 NA Intergenic AluSx1|SINE|Alu -4031 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 195-92 chr18 39084852 39085016 + 2 NA Intergenic L1MEc|LINE|L1 537241 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 187-183 chr8 136872717 136872833 + 2 NA intron (NR_147196, intron 4 of 5) intron (NR_147196, intron 4 of 5) 341977 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 421-311 chr8 134191854 134192155 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 305508 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 422-184 chr3 68589348 68589725 + 2 NA Intergenic Intergenic 88899 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 365-30 chr1 229810182 229810523 + 2 NA Intergenic LTR8|LTR|ERV1 75466 NR_146476 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 162-44 chr17 71431360 71431479 + 2 NA Intergenic Intergenic -229240 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 288-230 chr20 42979274 42979523 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 10655 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 391-289 chr5 101656859 101657109 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 639300 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 432-129 chr2 79871189 79871597 + 2 NA intron (NM_001282598, intron 5 of 17) intron (NM_001282598, intron 5 of 17) -4810 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 538-113 chr2 82372843 82373269 + 2 NA Intergenic Intergenic -483747 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 252-454 chr9 116747338 116747520 + 2 NA intron (NM_014010, intron 12 of 21) intron (NM_014010, intron 12 of 21) 60124 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 332-144 chr13 80275830 80276079 + 2 NA Intergenic Intergenic 63705 NM_001318537 10253 Hs.18676 NM_005842 ENSG00000136158 SPRY2 IGAN3|hSPRY2 sprouty RTK signaling antagonist 2 protein-coding 312-264 chr2 132999678 132999859 + 2 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 84211 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 217-88 chr12 66038419 66038572 + 2 NA Intergenic Intergenic -7429 NR_146530 105369810 NR_146530 ENSG00000256259 LINC02425 - long intergenic non-protein coding RNA 2425 ncRNA 595-7 chr1 81566688 81567088 + 2 NA intron (NM_001366008, intron 2 of 26) intron (NM_001366008, intron 2 of 26) -9186 NR_125943 101927434 Hs.130394 NR_125943 ENSG00000234953 LOC101927434 - uncharacterized LOC101927434 ncRNA 303-75 chr11 98702151 98702353 + 2 NA Intergenic Intergenic -318697 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 395-248 chr4 53761203 53761482 + 2 NA Intergenic L1MA7|LINE|L1 65441 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 376-3 chr1 48141857 48142170 + 2 NA intron (NR_026749, intron 7 of 9) LOR1-int|LTR|ERV1 40415 NR_026749 391037 Hs.585393 NR_026749 SKINT1L BTN12|SKINT1|SKINTL|SKINTP Skint1 like (pseudogene) pseudo 215-177 chr21 19147947 19148083 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -388203 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 412-54 chr11 81132497 81132873 + 2 NA Intergenic HAL1|LINE|L1 -369882 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 406-49 chr11 38466703 38467064 + 2 NA Intergenic L1PA15|LINE|L1 179473 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 305-251 chr2 51166342 51166643 + 2 NA intron (NR_135237, intron 2 of 10) L1PBa|LINE|L1 133891 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 191-120 chr20 9696160 9696315 + 2 NA intron (NM_020341, intron 3 of 10) MER5A|DNA|hAT-Charlie 142839 NM_020341 57144 Hs.32539 NM_020341 ENSG00000101349 PAK5 PAK7 p21 (RAC1) activated kinase 5 protein-coding 237-13 chr1 112528304 112528451 + 2 NA 3' UTR (NM_024494, exon 5 of 5) 3' UTR (NM_024494, exon 5 of 5) 19412 NM_024494 7482 Hs.258575 NM_004185 ENSG00000134245 WNT2B WNT13 Wnt family member 2B protein-coding 440-215 chr6 48717492 48717868 + 2 NA Intergenic L1MEf|LINE|L1 -648991 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 305-164 chr15 25583396 25583585 + 2 NA Intergenic L1MD2|LINE|L1 -144434 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 656-132 chr8 126020173 126020728 + 2 NA Intergenic Intergenic -69253 NR_038446 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 429-55 chr11 58339673 58339995 + 2 NA Intergenic Intergenic 19235 NM_001005489 219965 NM_001005489 ENSG00000197786 OR5B17 OR11-237|OR5B20P olfactory receptor family 5 subfamily B member 17 protein-coding 363-348 chr5 12372995 12373290 + 2 NA Intergenic L1MEg|LINE|L1 -201715 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 315-432 chr6 166907778 166907943 + 2 NA Intergenic Intergenic 4162 NR_046644 100861523 Hs.634640 NR_046644 RPS6KA2-AS1 - RPS6KA2 antisense RNA 1 ncRNA 345-503 chr7 104531290 104531559 + 2 NA intron (NM_199000, intron 1 of 2) UCON6|Unknown|Unknown 202768 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 349-417 chr5 73420310 73420623 + 2 NA Intergenic Intergenic 28311 NM_004472 2297 Hs.519385 NM_004472 ENSG00000251493 FOXD1 FKHL8|FREAC-4|FREAC4 forkhead box D1 protein-coding 133-78 chr7 126376618 126376742 + 2 NA Intergenic Intergenic 681504 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 347-235 chr2 107049541 107049860 + 2 NA Intergenic L1MA2|LINE|L1 -162591 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 583-142 chr5 166490173 166490638 + 2 NA Intergenic Intergenic 435965 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 177-50 chr14 68614456 68614567 + 2 NA intron (NM_001321818, intron 10 of 10) L1MB7|LINE|L1 14276 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 173-60 chr19 19709869 19709980 + 2 NA TTS (NM_021030) TTS (NM_021030) 23188 NM_021030 7561 Hs.659932 NM_021030 ENSG00000105708 ZNF14 GIOT-4|KOX6 zinc finger protein 14 protein-coding 262-119 chr14 37956746 37956933 + 2 NA Intergenic L1M5|LINE|L1 -54715 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 601-19 chr11 38555177 38555707 + 2 NA Intergenic Intergenic 90914 NR_120555 103312105 Hs.641711 NR_120554 ENSG00000255175 LINC02759 - long intergenic non-protein coding RNA 2759 ncRNA 278-191 chr19 37660933 37661194 + 2 NA Intergenic Intergenic -4802 NM_001320668 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 229-271 chr4 37340668 37340852 + 2 NA intron (NM_001144990, intron 2 of 6) intron (NM_001144990, intron 2 of 6) 96017 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 338-426 chr5 40373238 40373547 + 2 NA Intergenic L1MEd|LINE|L1 -306523 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 373-199 chr2 96167404 96167596 + 2 NA Intergenic L1MB7|LINE|L1 -22060 NM_004418 1844 Hs.1183 NM_004418 ENSG00000158050 DUSP2 PAC-1|PAC1 dual specificity phosphatase 2 protein-coding 262-359 chr6 4742796 4742945 + 2 NA intron (NM_001368125, intron 3 of 8) MLT1J-int|LTR|ERVL-MaLR -33534 NM_001368126 9425 Hs.269092 NM_004824 ENSG00000153046 CDYL CDYL1 chromodomain Y like protein-coding 351-440 chr7 31830457 31830658 + 2 NA intron (NM_001191059, intron 12 of 18) intron (NM_001191059, intron 12 of 18) 143342 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 340-563 chr9 12344786 12345082 + 2 NA Intergenic L1MA8|LINE|L1 -348451 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 262-282 chr3 96692199 96692364 + 2 NA Intergenic Intergenic -122313 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 193-182 chr7 4287877 4288054 + 2 NA Intergenic L1MD2|LINE|L1 -153128 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 552-83 chr17 18670739 18671140 + 2 NA 3' UTR (NM_001368134, exon 4 of 4) 3' UTR (NM_001368134, exon 4 of 4) 11375 NM_001368134 2310 Hs.592126 NM_001368134 FOXO3B FKHRL1P1|ZNF286C forkhead box O3B protein-coding 284-125 chr14 86819886 86820063 + 2 NA Intergenic Intergenic -85804 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 239-206 chr2 226998454 226998626 + 2 NA 3' UTR (NM_001167608, exon 9 of 9) 3' UTR (NM_001167608, exon 9 of 9) 162486 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 226-262 chr4 136091363 136091583 + 2 NA Intergenic Intergenic -177793 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 335-53 chr10 56259909 56260095 + 2 NA Intergenic Intergenic 101257 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 499-82 chr17 12581453 12581786 + 2 NA intron (NR_034144, intron 1 of 2) LTR1D1|LTR|ERV1 31651 NR_034145 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 334-294 chr2 174703744 174703997 + 2 NA Intergenic L1M5|LINE|L1 -15930 NR_002315 440926 Hs.533624 NR_002315 H3F3AP4 p13 H3 histone, family 3A, pseudogene 4 pseudo 296-266 chr20 38690822 38690981 + 2 NA Intergenic Intergenic -33585 NM_080552 140679 Hs.179080 NM_080552 ENSG00000101438 SLC32A1 VGAT|VIAAT solute carrier family 32 member 1 protein-coding 254-186 chr2 79171507 79171734 + 2 NA Intergenic Intergenic -11867 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 564-111 chr20 24161003 24161407 + 2 NA Intergenic Intergenic -38562 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 350-426 chr5 169158544 169158763 + 2 NA intron (NM_003062, intron 4 of 35) L1MDa|LINE|L1 105041 NR_030311 693170 NR_030311 ENSG00000207619 MIR585 MIRN585|hsa-mir-585|mir-585 microRNA 585 ncRNA 316-275 chr2 101128918 101129162 + 2 NA intron (NM_001102426, intron 1 of 19) L1MB3|LINE|L1 22407 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 316-272 chr2 85954829 85955073 + 2 NA Intergenic Intergenic 65671 NR_110569 101928113 Hs.625888 NR_110569 ST3GAL5-AS1 - ST3GAL5 antisense RNA 1 (head to head) ncRNA 558-6 chr1 79428363 79428780 + 2 NA Intergenic L1ME2|LINE|L1 -421841 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 463-315 chrX 26745644 26745961 + 2 NA Intergenic L1PB2|LINE|L1 187465 NR_001559 139538 Hs.447377 NR_001559 ENSG00000259849 VENTXP1 CT18|NA88A|VENTX2P1 VENT homeobox pseudogene 1 pseudo 118-23 chr18 77611630 77611711 + 2 NA Intergenic Intergenic 361822 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 233-232 chr3 54811224 54811363 + 2 NA intron (NM_018398, intron 13 of 37) L2|LINE|L2 89962 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 812-53 chr8 114037888 114038478 + 2 NA Intergenic L1MA4A|LINE|L1 -601244 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 330-151 chr14 46027744 46027963 + 2 NA Intergenic Intergenic -36306 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 197-138 chr3 101114924 101115072 + 2 NA Intergenic L1MB3|LINE|L1 -121508 NM_001365643 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 347-265 chr20 38049559 38049815 + 2 NA intron (NM_021215, intron 3 of 6) intron (NM_021215, intron 3 of 6) 15941 NM_021215 58490 Hs.278839 NM_021215 ENSG00000101413 RPRD1B C20orf77|CREPT|K-H|Kub5-Hera|NET60|dJ1057B20.2 regulation of nuclear pre-mRNA domain containing 1B protein-coding 185-102 chr2 107964110 107964255 + 2 NA Intergenic Intergenic -22342 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 520-8 chr1 76133320 76133810 + 2 NA intron (NM_001349108, intron 1 of 3) intron (NM_001349108, intron 1 of 3) 58819 NM_001349111 256435 Hs.337040 NM_152996 ENSG00000184005 ST6GALNAC3 PRO7177|SIAT7C|ST6GALNACIII|STY ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 289-48 chr10 15909024 15909233 + 2 NA Intergenic Intergenic -48595 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 219-276 chr5 26610908 26611070 + 2 NA Intergenic Intergenic 427597 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 296-355 chr5 13656044 13656254 + 2 NA Intergenic Intergenic 288331 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 330-273 chr2 83261257 83261537 + 2 NA Intergenic L1PA15|LINE|L1 -261417 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 754-24 chr15 25215126 25215703 + 2 NA promoter-TSS (NR_003342) promoter-TSS (NR_003342) -127 NR_003342 100033801 NR_003342 ENSG00000199489 SNORD115-25 HBII-52-25 small nucleolar RNA, C/D box 115-25 snoRNA 165-84 chr3 146935718 146935830 + 2 NA Intergenic Intergenic 13851 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 379-291 chr6 61377289 61377638 + 2 NA Intergenic ALR/Alpha|Satellite|centr -196667 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 401-224 chr4 33632357 33632620 + 2 NA Intergenic Intergenic 407405 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 311-15 chr1 90526074 90526244 + 2 NA Intergenic L1MA4A|LINE|L1 -131591 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 191-32 chr11 68425581 68425687 + 2 NA intron (NM_002335, intron 15 of 22) intron (NM_002335, intron 15 of 22) -35118 NR_147965 55291 Hs.503022 NM_018312 ENSG00000110075 PPP6R3 C11orf23|PP6R3|SAP190|SAPL|SAPLa|SAPS3 protein phosphatase 6 regulatory subunit 3 protein-coding 209-229 chr4 99038295 99038415 + 2 NA intron (NM_015143, intron 4 of 10) intron (NM_015143, intron 4 of 10) 40968 NR_037455 100500867 NR_037455 ENSG00000265213 MIR3684 - microRNA 3684 ncRNA 415-36 chr10 102191151 102191514 + 2 NA Intergenic AluY|SINE|Alu -34967 NM_152310 83401 Hs.302130 NM_152310 ENSG00000119915 ELOVL3 CIG-30|CIG30 ELOVL fatty acid elongase 3 protein-coding 235-71 chr11 106510222 106510417 + 2 NA Intergenic MIRc|SINE|MIR 258912 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 815-30 chr20 7304653 7305093 + 2 NA intron (NR_135005, intron 1 of 1) intron (NR_135005, intron 1 of 1) 2559 NR_135005 101929288 Hs.738005 NR_135005 ENSG00000261249 LINC01751 - long intergenic non-protein coding RNA 1751 ncRNA 236-34 chr10 9788851 9788999 + 2 NA Intergenic Intergenic -269797 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 251-338 chr6 66919762 66919982 + 2 NA Intergenic Intergenic 1131993 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 308-445 chr7 2965763 2966031 + 2 NA intron (NM_032415, intron 1 of 24) MLT1J|LTR|ERVL-MaLR 77970 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 339-111 chr11 109453385 109453604 + 2 NA Intergenic L1M4|LINE|L1 31304 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 280-302 chr4 153694611 153694860 + 2 NA intron (NM_003264, intron 2 of 2) L1MA3|LINE|L1 10455 NM_001318787 7097 Hs.519033 NM_003264 ENSG00000137462 TLR2 CD282|TIL4 toll like receptor 2 protein-coding 370-313 chr3 97967381 97967618 + 2 NA exon (NM_032778, exon 2 of 10) exon (NM_032778, exon 2 of 10) 4932 NM_153182 84864 Hs.570562 NM_032778 ENSG00000170854 RIOX2 JMJD10|MDIG|MINA|MINA53|NO52|ROX ribosomal oxygenase 2 protein-coding 633-58 chr2 17778555 17779122 + 2 NA intron (NM_182625, intron 12 of 13) intron (NM_182625, intron 12 of 13) 24700 NM_001130009 348654 Hs.467793 NM_182625 ENSG00000178295 GEN1 Gen GEN1 Holliday junction 5' flap endonuclease protein-coding 430-338 chr9 106125138 106125507 + 2 NA Intergenic Intergenic 430781 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 240-137 chr14 60549745 60549920 + 2 NA Intergenic L1MA5A|LINE|L1 40686 NM_007374 4990 Hs.194756 NM_007374 ENSG00000184302 SIX6 MCOPCT2|ODRMD|OPTX2|Six9 SIX homeobox 6 protein-coding 324-373 chr3 189748131 189748346 + 2 NA intron (NM_003722, intron 3 of 13) L1MA4A|LINE|L1 -41421 NM_001329149 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 270-33 chr10 43738660 43738842 + 2 NA Intergenic HERV16-int|LTR|ERVL 40074 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 184-53 chr13 91326049 91326201 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -21695 NR_027349 407975 Hs.24115 NR_027349 ENSG00000215417 MIR17HG C13orf25|FGLDS2|LINC00048|MIHG1|MIRH1|MIRHG1|NCRNA00048|miR-17-92 miR-17-92a-1 cluster host gene ncRNA 567-175 chr8 32428318 32428724 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -12225 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 265-188 chr2 105662764 105662986 + 2 NA Intergenic L1ME2|LINE|L1 -52316 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 398-373 chr8 138298169 138298531 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 198911 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 557-99 chr2 80826171 80826539 + 2 NA Intergenic L1ME4b|LINE|L1 512976 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 177-131 chr5 99822269 99822389 + 2 NA Intergenic Intergenic 288339 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 353-371 chr4 52886708 52886888 + 2 NA intron (NM_152540, intron 7 of 8) intron (NM_152540, intron 7 of 8) 24481 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 395-302 chr7 6618391 6618765 + 2 NA intron (NM_001353546, intron 2 of 2) AluJb|SINE|Alu 2968 NM_001353546 54753 Hs.592170 NM_017560 ENSG00000236609 ZNF853 - zinc finger protein 853 protein-coding 431-261 chr6 164120052 164120404 + 2 NA Intergenic L3b|LINE|CR1 -448744 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 271-358 chr5 141504315 141504512 + 2 NA intron (NM_018923, intron 2 of 3) L2c|LINE|L2 15172 NM_032407 56097 Hs.368160 NM_018929 ENSG00000240764 PCDHGC5 PCDH-GAMMA-C5 protocadherin gamma subfamily C, 5 protein-coding 239-172 chr2 60116933 60117127 + 2 NA Intergenic L1PA14|LINE|L1 266006 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 209-259 chr5 127725398 127725561 + 2 NA intron (NM_001317938, intron 2 of 6) MER33|DNA|hAT-Charlie 22090 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 337-440 chr5 33355791 33356016 + 2 NA Intergenic Intergenic -84793 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 485-258 chr7 9268244 9268559 + 2 NA Intergenic L1M6|LINE|L1 -365869 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 489-4 chr1 36832022 36832433 + 2 NA intron (NM_000831, intron 10 of 15) L2b|LINE|L2 202288 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 358-156 chr17 29293787 29294062 + 2 NA exon (NM_020772, exon 1 of 4) exon (NM_020772, exon 1 of 4) 224 NM_020772 57532 Hs.462598 NM_020772 ENSG00000108256 NUFIP2 182-FIP|82-FIP|FIP-82|PIG1 nuclear FMR1 interacting protein 2 protein-coding 374-92 chr13 106022045 106022287 + 2 NA Intergenic Intergenic 315336 NR_046391 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 326-96 chr11 33685059 33685346 + 2 NA Intergenic Intergenic 15538 NM_001166692 100131378 Hs.709466 NM_001166692 ENSG00000205177 C11orf91 - chromosome 11 open reading frame 91 protein-coding 298-3 chr1 55453282 55453526 + 2 NA Intergenic L1MC4a|LINE|L1 227763 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 506-29 chr1 248673510 248673962 + 2 NA Intergenic Intergenic 8568 NM_001004734 401994 Hs.449973 NM_001004734 ENSG00000189181 OR14I1 OR5BU1|OR5BU1P olfactory receptor family 14 subfamily I member 1 protein-coding 362-296 chr4 37645742 37646024 + 2 NA intron (NM_001085400, intron 3 of 6) intron (NM_001085400, intron 3 of 6) 40493 NM_001085399 768211 Hs.283378 NM_001085399 ENSG00000181826 RELL1 - RELT like 1 protein-coding 367-235 chr2 194842398 194842593 + 2 NA Intergenic LTR1D|LTR|ERV1 111900 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 480-216 chr4 66033824 66034297 + 2 NA Intergenic Intergenic -242764 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 484-110 chr2 6806401 6806725 + 2 NA Intergenic L2c|LINE|L2 33901 NR_126359 104326052 Hs.7155 NR_126359 NRIR lncRNA-CMPK2 negative regulator of interferon response ncRNA 478-201 chr3 179209118 179209456 + 2 NA intron (NM_006218, intron 6 of 20) L1ME3A|LINE|L1 42328 NM_014407 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 256-382 chr7 20257098 20257241 + 2 NA Intergenic Intergenic -39539 NR_110117 101927769 Hs.256080 NR_110117 ENSG00000226097 LOC101927769 - uncharacterized LOC101927769 ncRNA 272-107 chr14 28248815 28249011 + 2 NA Intergenic L1MA1|LINE|L1 516406 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 445-121 chr2 77295066 77295435 + 2 NA intron (NR_146416, intron 1 of 1) intron (NR_146416, intron 1 of 1) 227126 NM_001282928 80059 Hs.285782 NM_024993 ENSG00000176204 LRRTM4 - leucine rich repeat transmembrane neuronal 4 protein-coding 285-148 chr16 82279364 82279551 + 2 NA Intergenic Intergenic -109233 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 369-81 chr12 40082133 40082484 + 2 NA intron (NM_052885, intron 1 of 9) L1PA15|LINE|L1 23773 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 324-567 chr9 81864893 81865112 + 2 NA Intergenic Intergenic -48435 NR_026851 347127 Hs.215235 NM_198509 ENSG00000240632 SPATA31D5P FAM75D5|FAM75D5P SPATA31 subfamily D member 5, pseudogene pseudo 311-62 chr10 83567585 83567845 + 2 NA Intergenic L1ME3G|LINE|L1 109374 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 256-336 chr5 130454388 130454582 + 2 NA Intergenic Intergenic 550020 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 399-73 chr12 104242663 104243021 + 2 NA intron (NM_001093771, intron 1 of 16) L4_B_Mam|LINE|RTE-X 27063 NM_001093771 7296 Hs.654922 NM_003330 ENSG00000198431 TXNRD1 GRIM-12|TR|TR1|TRXR1|TXNR thioredoxin reductase 1 protein-coding 208-253 chr8 5272756 5272919 + 2 NA Intergenic (CCATTT)n|Simple_repeat|Simple_repeat -277923 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 225-32 chr10 32765566 32765748 + 2 NA intron (NM_001321115, intron 29 of 43) ERVL-B4-int|LTR|ERVL 135815 NR_132768 106633814 NR_132768 SNORA86 - small nucleolar RNA, H/ACA box 86 snoRNA 505-292 chr7 104973307 104973721 + 2 NA Intergenic Intergenic 17651 NR_039981 100216546 Hs.369356 NR_039981 LINC01004 - long intergenic non-protein coding RNA 1004 ncRNA 536-109 chr2 19064694 19065075 + 2 NA Intergenic Intergenic -37913 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 314-85 chr11 5535898 5536119 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie 9515 NM_001005289 390067 Hs.554540 NM_001005289 ENSG00000181616 OR52H1 OR11-41|OR11-45 olfactory receptor family 52 subfamily H member 1 protein-coding 448-310 chrX 138132578 138132938 + 2 NA Intergenic Intergenic 535035 NR_030229 574507 NR_030229 ENSG00000207800 MIR504 MIRN504|hsa-mir-504|mir-504 microRNA 504 ncRNA 388-321 chr7 22602902 22603145 + 2 NA Intergenic Intergenic 39686 NR_038393 100506178 Hs.668122 NR_038393 ENSG00000232759 LOC100506178 - uncharacterized LOC100506178 ncRNA 458-108 chr18 38782719 38783080 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 839276 NR_030628 100126323 NR_030628 ENSG00000283615 MIR924 MIRN924|hsa-mir-924 microRNA 924 ncRNA 275-119 chr15 57689458 57689662 + 2 NA intron (NR_104371, intron 12 of 16) (TA)n|Simple_repeat|Simple_repeat -16961 NM_001018102 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 247-49 chr10 133587645 133587824 + 2 NA Intergenic L1ME1|LINE|L1 -17776 NR_033789 399833 Hs.660426 NM_001001678 SPRNP1 - shadow of prion protein pseudogene 1 pseudo 520-44 chr10 123430915 123431342 + 2 NA Intergenic L3|LINE|CR1 -235227 NM_153442 2849 Hs.12751 NM_153442 ENSG00000154478 GPR26 - G protein-coupled receptor 26 protein-coding 271-190 chr2 22880953 22881163 + 2 NA Intergenic Intergenic 344579 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 483-206 chr5 46103209 46103631 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -407040 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 394-343 chr9 98956698 98957046 + 2 NA intron (NM_001855, intron 2 of 41) MER5A1|DNA|hAT-Charlie 12965 NM_001855 1306 Hs.409034 NM_001855 ENSG00000204291 COL15A1 - collagen type XV alpha 1 chain protein-coding 328-435 chr5 20348871 20349162 + 2 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 43465 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 430-193 chr3 74936270 74936623 + 2 NA Intergenic Intergenic -278030 NR_039646 100616394 NR_039646 ENSG00000284252 MIR4444-1 MIR4444|hsa-mir-4444-1|miR-4444-1 microRNA 4444-1 ncRNA 380-374 chr7 124557721 124558059 + 2 NA Intergenic Intergenic -205794 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 350-105 chr12 115777930 115778126 + 2 NA Intergenic Intergenic 370626 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 290-367 chr5 125180798 125180992 + 2 NA intron (NR_109882, intron 4 of 5) MER58A|DNA|hAT-Charlie 144064 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 538-128 chr2 182872878 182873229 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -6416 NM_001463 2487 Hs.128453 NM_001463 ENSG00000162998 FRZB FRE|FRITZ|FRP-3|FRZB-1|FRZB-PEN|FRZB1|FZRB|OS1|SFRP3|SRFP3|hFIZ frizzled related protein protein-coding 210-96 chr16 80874793 80874937 + 2 NA intron (NR_131948, intron 1 of 2) L1MEd|LINE|L1 17731 NR_131948 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 362-452 chr8 133037727 133037972 + 2 NA 3' UTR (NM_001282964, exon 7 of 7) 3' UTR (NM_001282964, exon 7 of 7) 8732 NR_107002 102466865 NR_107002 ENSG00000276961 MIR7848 hsa-mir-7848 microRNA 7848 ncRNA 239-257 chr3 133048789 133049015 + 2 NA intron (NM_001136469, intron 2 of 5) intron (NM_001136469, intron 2 of 5) 10614 NM_023943 66000 Hs.191616 NM_023943 ENSG00000144868 TMEM108 CT124|RTLN transmembrane protein 108 protein-coding 404-145 chr18 61147226 61147572 + 2 NA Intergenic Intergenic -186031 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 469-135 chr2 97971953 97972267 + 2 NA intron (NM_015348, intron 1 of 40) AluSz|SINE|Alu 23838 NM_015348 23505 Hs.469376 NM_015348 ENSG00000075568 TMEM131 CC28|PRO1048|RW1|YR-23 transmembrane protein 131 protein-coding 319-573 chr9 71878386 71878567 + 2 NA intron (NM_001025780, intron 1 of 3) L1MEh|LINE|L1 32769 NM_016014 51104 Hs.380389 NM_016014 ENSG00000107362 ABHD17B C9orf77|CGI-67|FAM108B1 abhydrolase domain containing 17B protein-coding 162-120 chr7 30318174 30318289 + 2 NA intron (NM_147128, intron 1 of 4) intron (NM_147128, intron 1 of 4) -28341 NR_037513 100500883 NR_037513 ENSG00000283237 MIR550B1 - microRNA 550b-1 ncRNA 270-305 chr5 77246942 77247191 + 2 NA intron (NM_001029853, intron 1 of 20) intron (NM_001029853, intron 1 of 20) 36386 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 417-115 chr18 13992748 13993043 + 2 NA Intergenic Intergenic -77188 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 288-2 chr1 14178845 14179068 + 2 NA Intergenic L1MEc|LINE|L1 241017 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 192-46 chr12 33670376 33670533 + 2 NA Intergenic Intergenic -230635 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 209-34 chr10 35708771 35708969 + 2 NA Intergenic Intergenic -67436 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 379-356 chr8 121487488 121487704 + 2 NA Intergenic L1M1|LINE|L1 -151750 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 407-68 chr12 82439096 82439435 + 2 NA intron (NM_001347934, intron 9 of 12) intron (NM_001347934, intron 9 of 12) -80460 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 256-195 chr2 55201834 55202006 + 2 NA intron (NR_148539, intron 1 of 3) L1MA3|LINE|L1 -29983 NM_001135592 6233 Hs.311640 NM_002954 ENSG00000143947 RPS27A CEP80|HEL112|S27A|UBA80|UBC|UBCEP1|UBCEP80 ribosomal protein S27a protein-coding 324-59 chr10 64382615 64382870 + 2 NA Intergenic Intergenic -442786 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 675-40 chr19 56911426 56911936 + 2 NA Intergenic AluJb|SINE|Alu 70779 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 399-220 chr3 185894465 185894821 + 2 NA Intergenic L1MEc|LINE|L1 43371 NM_001243879 6434 Hs.533122 NM_004593 ENSG00000136527 TRA2B Htra2-beta|PPP1R156|SFRS10|SRFS10|TRA2-BETA|TRAN2B transformer 2 beta homolog protein-coding 328-123 chr13 25870559 25870822 + 2 NA intron (NM_016529, intron 33 of 36) intron (NM_016529, intron 33 of 36) 180370 NM_001007538 387914 Hs.433791 NM_001007538 ENSG00000180730 SHISA2 C13orf13|PRO28631|TMEM46|WGAR9166|bA398O19.2|hShisa shisa family member 2 protein-coding 875-33 chr7 113943592 113944295 + 2 NA Intergenic L1ME3A|LINE|L1 -24934 NM_002711 5506 Hs.458309 NM_002711 ENSG00000154415 PPP1R3A GM|PP1G|PPP1R3 protein phosphatase 1 regulatory subunit 3A protein-coding 321-486 chr6 2292769 2292944 + 2 NA intron (NR_046229, intron 3 of 6) L1PB3|LINE|L1 47103 NR_046229 100508120 Hs.188825 NR_046229 GMDS-DT GMDS-AS1 GMDS divergent transcript ncRNA 364-100 chr12 15376572 15376871 + 2 NA intron (NM_030667, intron 1 of 26) MLT1A0|LTR|ERVL-MaLR 54213 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 407-103 chr16 72749358 72749721 + 2 NA Intergenic L1M5|LINE|L1 -84569 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 469-24 chr1 229892251 229892711 + 2 NA promoter-TSS (NR_146473) promoter-TSS (NR_146473) -445 NR_146474 101927504 NR_146473 ENSG00000227043 LINC01682 - long intergenic non-protein coding RNA 1682 ncRNA 562-96 chr2 18000676 18001064 + 2 NA Intergenic MER61-int|LTR|ERV1 122203 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 338-455 chr5 153311994 153312285 + 2 NA Intergenic L1ME3B|LINE|L1 -178385 NM_001114183 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 315-7 chr1 43488536 43488709 + 2 NA Intergenic L1MB7|LINE|L1 -34633 NM_001243526 81888 Hs.709864 NM_031207 ENSG00000178922 HYI HT036 hydroxypyruvate isomerase (putative) protein-coding 436-179 chr3 34442327 34442647 + 2 NA Intergenic L1MA9|LINE|L1 643857 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 284-250 chr22 44229091 44229286 + 2 NA Intergenic Intergenic 48263 NM_022141 64098 Hs.658995 NM_022141 ENSG00000138964 PARVG - parvin gamma protein-coding 309-247 chr2 58936168 58936323 + 2 NA intron (NR_033873, intron 6 of 13) intron (NR_033873, intron 6 of 13) -281463 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 256-134 chr15 37241949 37242195 + 2 NA Intergenic AluJb|SINE|Alu -140761 NM_001220482 4212 Hs.510989 NM_002399 ENSG00000134138 MEIS2 CPCMR|HsT18361|MRG1 Meis homeobox 2 protein-coding 165-56 chr2 156482678 156482824 + 2 NA intron (NM_000408, intron 2 of 16) intron (NM_000408, intron 2 of 16) 46372 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 279-383 chr7 24412350 24412599 + 2 NA Intergenic L1MC3|LINE|L1 128284 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 342-7 chr1 38595322 38595610 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 120270 NR_146761 105378656 Hs.128924 NR_146761 ENSG00000238063 LINC01685 - long intergenic non-protein coding RNA 1685 ncRNA 313-216 chr18 63749723 63749928 + 2 NA Intergenic L1ME4a|LINE|L1 -3222 NM_001040147 8710 Hs.138202 NM_003784 ENSG00000166396 SERPINB7 MEGSIN|PPKN|TP55 serpin family B member 7 protein-coding 228-42 chr10 82856778 82856990 + 2 NA intron (NR_163252, intron 3 of 8) intron (NR_163252, intron 3 of 8) -623964 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 646-43 chr16 78723058 78723654 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 623702 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 588-89 chr21 19317990 19318457 + 2 NA Intergenic L1M5|LINE|L1 -558411 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 315-78 chr11 13020078 13020272 + 2 NA Intergenic L1M4|LINE|L1 10859 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 333-260 chr2 118629132 118629316 + 2 NA Intergenic Intergenic -26258 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 369-214 chr2 125217466 125217770 + 2 NA Intergenic L1MA5A|LINE|L1 900367 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 201-65 chr12 111019496 111019662 + 2 NA Intergenic L1ME3D|LINE|L1 -14586 NM_015267 23316 Hs.124953 NM_015267 ENSG00000111249 CUX2 CDP2|CUTL2|EIEE67 cut like homeobox 2 protein-coding 473-149 chr2 195761259 195761644 + 2 NA intron (NM_018897, intron 61 of 64) L1MA3|LINE|L1 104225 NM_020342 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 681-19 chr14 70228738 70229123 + 2 NA intron (NR_135825, intron 3 of 3) L1P3|LINE|L1 18871 NR_003951 145241 Hs.712468 NR_003951 ENSG00000235812 ADAM21P1 ADAM21P ADAM metallopeptidase domain 21 pseudogene 1 pseudo 557-45 chr12 69890725 69891189 + 2 NA intron (NM_182530, intron 6 of 24) intron (NM_182530, intron 6 of 24) 65730 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 328-340 chr3 28208827 28209074 + 2 NA Intergenic L1ME3G|LINE|L1 -32669 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 356-514 chrX 53775731 53775966 + 2 NA Intergenic Intergenic -89129 NM_031407 10075 Hs.136905 NM_031407 ENSG00000086758 HUWE1 ARF-BP1|HECTH9|HSPC272|Ib772|LASU1|MRXST|MULE|URE-B1|UREB1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 protein-coding 403-243 chr5 39554136 39554480 + 2 NA Intergenic Intergenic 33877 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 228-369 chr9 30548194 30548345 + 2 NA Intergenic L1MA5|LINE|L1 -139815 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 426-122 chr2 6401229 6401597 + 2 NA Intergenic L1PB4|LINE|L1 -25991 NR_110251 101929390 Hs.434407 NR_110251 ENSG00000227007 LINC01247 - long intergenic non-protein coding RNA 1247 ncRNA 250-295 chr3 174858837 174859080 + 2 NA promoter-TSS (NM_207015) promoter-TSS (NM_207015) -376 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 892-9 chr11 13108960 13109555 + 2 NA Intergenic LTR28C|LTR|ERV1 99941 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 517-31 chr10 41725229 41725610 + 2 NA Intergenic ALR/Alpha|Satellite|centr 642626 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 319-229 chr2 16309540 16309816 + 2 NA Intergenic L1ME1|LINE|L1 259251 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 300-39 chr10 45475970 45476267 + 2 NA intron (NM_001282866, intron 3 of 7) L1MA4A|LINE|L1 -22997 NR_120674 102724323 Hs.559151 NR_120674 ENSG00000231964 LOC102724323 - uncharacterized LOC102724323 ncRNA 314-450 chr5 23223339 23223543 + 2 NA Intergenic Intergenic -284168 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 313-351 chr3 95959723 95959950 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -276643 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 371-156 chr19 56815592 56815869 + 2 NA exon (NM_001369722, exon 10 of 10) exon (NM_001369722, exon 10 of 10) 3250 NR_023847 100169890 NR_023847 PEG3-AS1 APEG3|NCRNA00155|PEG3-AS|PEG3AS PEG3 antisense RNA 1 ncRNA 502-111 chr17 54576906 54577326 + 2 NA Intergenic L1ME3B|LINE|L1 -323575 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 349-173 chr14 95955936 95956211 + 2 NA Intergenic Intergenic 79301 NR_132398 100507043 Hs.455955 NR_038861 ENSG00000250366 TUNAR HI-LNC78|LINC00617|TUNA TCL1 upstream neural differentiation-associated RNA ncRNA 249-234 chr2 239741226 239741409 + 2 NA Intergenic Intergenic -21543 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 402-303 chr6 137302905 137303174 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -83609 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 322-271 chr2 145492117 145492309 + 2 NA Intergenic L2a|LINE|L2 824246 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 259-284 chr4 70752779 70752962 + 2 NA intron (NM_001291994, intron 2 of 13) L1MB7|LINE|L1 18460 NM_001291993 22902 Hs.740904 NM_014961 ENSG00000018189 RUFY3 RIPX|SINGAR1|ZFYVE30 RUN and FYVE domain containing 3 protein-coding 333-276 chr2 160947057 160947347 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -189753 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 236-77 chr12 5374879 5375064 + 2 NA Intergenic Intergenic -57137 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 179-98 chr5 142229009 142229129 + 2 NA Intergenic L1MC5|LINE|L1 89253 NR_131221 100642175 Hs.684549 NR_131221 SPRY4-IT1 SPRIGHTLY SPRY4 intronic transcript 1 ncRNA 367-139 chr15 81462780 81463027 + 2 NA Intergenic L1M2|LINE|L1 -88690 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 382-409 chr8 85166597 85166875 + 2 NA Intergenic Intergenic 10305 NR_134311 102723322 Hs.535913 NR_134311 ENSG00000260493 LOC102723322 - uncharacterized LOC102723322 ncRNA 520-301 chr8 110609826 110610331 + 2 NA Intergenic MER119|DNA|hAT-Charlie 417355 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 335-28 chr1 185861422 185861635 + 2 NA intron (NM_031935, intron 2 of 106) intron (NM_031935, intron 2 of 106) 127137 NM_031935 83872 Hs.58877 NM_031935 ENSG00000143341 HMCN1 ARMD1|FBLN6|FIBL-6|FIBL6 hemicentin 1 protein-coding 526-167 chr3 30524648 30525036 + 2 NA intron (NR_147054, intron 2 of 2) intron (NR_147054, intron 2 of 2) 5974 NR_147054 101928015 Hs.581534 NR_147054 LINC01985 - long intergenic non-protein coding RNA 1985 ncRNA 600-80 chr21 46580463 46580835 + 2 NA Intergenic L1PA10|LINE|L1 24433 NM_006272 6285 Hs.422181 NM_006272 ENSG00000160307 S100B NEF|S100|S100-B|S100beta S100 calcium binding protein B protein-coding 609-36 chr15 79098504 79098986 + 2 NA Intergenic L1M5|LINE|L1 -7965 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 298-263 chr20 60638954 60639150 + 2 NA Intergenic AluJb|SINE|Alu 74490 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 295-109 chr12 131607683 131607880 + 2 NA Intergenic Plat_L3|LINE|CR1 40340 NR_146868 105370085 Hs.739274 NR_146868 LINC02414 - long intergenic non-protein coding RNA 2414 ncRNA 280-136 chr15 38970516 38970708 + 2 NA Intergenic Intergenic 274014 NR_160786 635-20 chr12 3563461 3563856 + 2 NA intron (NM_019854, intron 4 of 9) MIRc|SINE|MIR -70839 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 141-50 chr22 28370370 28370505 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -89432 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 321-395 chr3 175314249 175314539 + 2 NA intron (NM_207015, intron 4 of 13) intron (NM_207015, intron 4 of 13) -43298 NR_046713 100874244 Hs.581176 NR_046713 NAALADL2-AS2 - NAALADL2 antisense RNA 2 ncRNA 452-275 chr8 122431087 122431498 + 2 NA intron (NR_131202, intron 2 of 3) MER2|DNA|TcMar-Tigger 137352 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 544-201 chr6 140577513 140577933 + 2 NA Intergenic L1ME1|LINE|L1 -106091 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 174-151 chr9 22838259 22838403 + 2 NA Intergenic L1M4|LINE|L1 192131 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 295-478 chr8 117286378 117286629 + 2 NA Intergenic Intergenic 151508 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 265-221 chr21 21695111 21695335 + 2 NA Intergenic Intergenic 42096 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 350-2 chr1 55636752 55636946 + 2 NA Intergenic L2c|LINE|L2 308114 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 280-172 chr18 14118649 14118856 + 2 NA intron (NM_145287, intron 2 of 2) L1M3a|LINE|L1 13683 NM_145287 162655 Hs.352635 NM_145287 ENSG00000175322 ZNF519 HsT2362 zinc finger protein 519 protein-coding 267-316 chr5 11591589 11591815 + 2 NA intron (NM_001288717, intron 2 of 20) intron (NM_001288717, intron 2 of 20) -2636 NM_001364128 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 546-134 chr21 32078628 32079132 + 2 NA Intergenic Intergenic 7415 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 222-360 chr8 35953643 35953831 + 2 NA Intergenic HERVE-int|LTR|ERV1 -243417 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 1063-10 chr14 32082968 32083585 + 2 NA intron (NM_001030055, intron 1 of 6) MER58B|DNA|hAT-Charlie 5972 NM_001173 394 Hs.592313 NM_001173 ENSG00000100852 ARHGAP5 GFI2|RhoGAP5|p190-B|p190BRhoGAP Rho GTPase activating protein 5 protein-coding 505-130 chr2 3860910 3861258 + 2 NA Intergenic Intergenic 112948 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 232-236 chr3 34442775 34442891 + 2 NA Intergenic L1MA9|LINE|L1 644203 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 493-128 chr19 30292473 30292911 + 2 NA Intergenic Intergenic -79692 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 305-212 chr18 4814830 4815083 + 2 NA Intergenic Intergenic -266226 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 669-19 chr12 27890911 27891502 + 2 NA Intergenic L1MA6|LINE|L1 78770 NM_198964 5744 Hs.591159 NM_002820 ENSG00000087494 PTHLH BDE2|HHM|PLP|PTHR|PTHRP parathyroid hormone like hormone protein-coding 353-180 chr16 78183546 78183766 + 2 NA intron (NM_001291997, intron 4 of 7) intron (NM_001291997, intron 4 of 7) 84002 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 440-74 chr14 101100283 101100696 + 2 NA Intergenic L1MA7|LINE|L1 -20367 NR_146490 101929422 NR_146490 ENSG00000259004 LINC02285 - long intergenic non-protein coding RNA 2285 ncRNA 303-83 chr12 9822706 9822973 + 2 NA intron (NR_159359, intron 1 of 5) L1PA13|LINE|L1 -4642 NM_016523 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 290-105 chr12 43556305 43556580 + 2 NA Intergenic L1MEc|LINE|L1 -4239 NM_025003 80070 Hs.287554 NM_025003 ENSG00000173157 ADAMTS20 ADAM-TS20|ADAMTS-20|GON-1 ADAM metallopeptidase with thrombospondin type 1 motif 20 protein-coding 441-137 chr2 205501405 205501659 + 2 NA intron (NM_205863, intron 20 of 21) intron (NM_205863, intron 20 of 21) -180968 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 385-268 chr4 60106161 60106472 + 2 NA Intergenic Tigger18a|DNA|TcMar-Tigger -816303 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 215-49 chr11 58423170 58423359 + 2 NA promoter-TSS (NM_001005566) promoter-TSS (NM_001005566) 49 NM_001005566 390190 Hs.553753 NM_001005566 ENSG00000172365 OR5B2 OR11-240|OST073 olfactory receptor family 5 subfamily B member 2 protein-coding 446-277 chr7 64085770 64086080 + 2 NA TTS (NM_001159522) TTS (NM_001159522) 40491 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 414-22 chr10 28886443 28886686 + 2 NA Intergenic Intergenic 40156 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 365-170 chr19 24238041 24238346 + 2 NA Intergenic ALR/Alpha|Satellite|centr -74746 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 732-84 chr6 145164728 145165455 + 2 NA Intergenic L1MC5a|LINE|L1 521786 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 269-86 chr12 29780175 29780419 + 2 NA intron (NM_175861, intron 1 of 17) L1MD2|LINE|L1 3645 NM_001367875 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 216-159 chr2 19402587 19402769 + 2 NA Intergenic Intergenic -44055 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 275-330 chr7 46895383 46895581 + 2 NA Intergenic L1PA16|LINE|L1 -198360 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 276-396 chr6 38862801 38863068 + 2 NA intron (NM_001371, intron 43 of 91) L2-1_AMi|LINE|L2 90173 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 449-45 chr11 82526503 82526798 + 2 NA Intergenic Intergenic -122737 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 517-89 chr15 100397519 100397986 + 2 NA intron (NR_120374, intron 1 of 4) L1ME3A|LINE|L1 24813 NR_120374 102723320 Hs.416099 NR_120374 CERS3-AS1 - CERS3 antisense RNA 1 ncRNA 331-50 chr10 61929137 61929348 + 2 NA intron (NM_032199, intron 2 of 9) MamRep564|Unknown|Unknown 27543 NM_032199 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 513-230 chr5 114828710 114829030 + 2 NA Intergenic L1MA9|LINE|L1 -55457 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 192-47 chr12 38899606 38899726 + 2 NA intron (NM_153634, intron 1 of 19) MER63D|DNA|hAT-Blackjack 5925 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 232-180 chr2 115188308 115188480 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) 26239 NM_001004360 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 252-86 chr12 15102067 15102218 + 2 NA Intergenic L1ME1|LINE|L1 -49781 NR_046559 100873980 Hs.569154 NR_046559 ENSG00000255660 RERG-AS1 - RERG antisense RNA 1 ncRNA 296-198 chr18 47776897 47777174 + 2 NA Intergenic Intergenic 153624 NM_005901 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 447-109 chr19 22559376 22559752 + 2 NA Intergenic Intergenic 26938 NR_110664 100128139 Hs.550683 NR_110663 ENSG00000269364 LINC01233 XLOC_013014 long intergenic non-protein coding RNA 1233 ncRNA 254-383 chr7 51060072 51060316 + 2 NA intron (NM_015198, intron 7 of 12) intron (NM_015198, intron 7 of 12) 256615 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 293-198 chr2 115422084 115422323 + 2 NA intron (NM_001321912, intron 4 of 25) intron (NM_001321912, intron 4 of 25) 78388 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 549-181 chr6 67236046 67236414 + 2 NA Intergenic L1ME4a|LINE|L1 -819121 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 301-155 chr17 10416967 10417121 + 2 NA intron (NM_002472, intron 5 of 39) intron (NM_002472, intron 5 of 39) 4906 NM_002472 4626 Hs.700484 NM_002472 ENSG00000133020 MYH8 DA7|MyHC-peri|MyHC-pn|gtMHC-F myosin heavy chain 8 protein-coding 225-152 chr2 51136932 51137125 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 104427 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 266-22 chr1 191396360 191396570 + 2 NA Intergenic L1MC|LINE|L1 -167967 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 377-140 chr15 86158785 86159040 + 2 NA intron (NM_152336, intron 4 of 24) intron (NM_152336, intron 4 of 24) -42195 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 584-134 chr5 75974375 75974765 + 2 NA Intergenic Intergenic -108813 NM_014979 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 548-121 chr2 129421980 129422491 + 2 NA Intergenic Intergenic -148344 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 353-292 chr20 58161890 58162166 + 2 NA TTS (NM_178456) TTS (NM_178456) 11126 NM_178456 128602 Hs.43977 NM_178456 ENSG00000124237 C20orf85 LLC1|bA196N14.1 chromosome 20 open reading frame 85 protein-coding 344-203 chr18 40745120 40745385 + 2 NA Intergenic L1MC4a|LINE|L1 678966 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 330-68 chr10 91089527 91089746 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 43828 NR_047467 100874184 Hs.512240 NR_047467 LINC00502 - long intergenic non-protein coding RNA 502 ncRNA 348-399 chr5 36016265 36016595 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -15408 NM_001171873 133688 Hs.254699 NM_152404 ENSG00000145626 UGT3A1 - UDP glycosyltransferase family 3 member A1 protein-coding 461-127 chr2 63031316 63031616 + 2 NA intron (NM_001142615, intron 19 of 22) intron (NM_001142615, intron 19 of 22) 16245 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 222-129 chr16 26172330 26172509 + 2 NA Intergenic (GAAA)n|Simple_repeat|Simple_repeat 147182 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 460-266 chr6 170258568 170258922 + 2 NA intron (NR_002787, intron 1 of 2) intron (NR_002787, intron 1 of 2) 3824 NR_002787 154449 Hs.447751 NR_002787 ENSG00000230960 LOC154449 - uncharacterized LOC154449 ncRNA 438-41 chr10 124807764 124808125 + 2 NA intron (NM_032182, intron 2 of 8) intron (NM_032182, intron 2 of 8) 6125 NM_032182 23172 Hs.280695 NM_032182 ENSG00000165660 ABRAXAS2 ABRO1|FAM175B|KIAA0157 abraxas 2, BRISC complex subunit protein-coding 296-306 chr3 117914588 117914880 + 2 NA Intergenic Intergenic -223809 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 359-301 chr21 45373476 45373758 + 2 NA Intergenic MIR|SINE|MIR -31548 NM_130445 80781 Hs.517356 NM_030582 ENSG00000182871 COL18A1 KNO|KNO1|KS collagen type XVIII alpha 1 chain protein-coding 319-257 chr2 125332017 125332268 + 2 NA Intergenic L1MEb|LINE|L1 785843 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 254-267 chr4 32044336 32044490 + 2 NA intron (NR_125936, intron 1 of 2) intron (NR_125936, intron 1 of 2) -21991 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 651-129 chrX 97911122 97911710 + 2 NA Intergenic L1MEd|LINE|L1 -346881 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 365-265 chr3 113343514 113343841 + 2 NA intron (NM_001164496, intron 23 of 34) L2c|LINE|L2 -60321 NR_046728 100874029 Hs.599665 NR_046728 ENSG00000243849 CFAP44-AS1 WDR52-AS1 CFAP44 antisense RNA 1 ncRNA 801-32 chr20 42943631 42944065 + 2 NA intron (NM_133170, intron 1 of 31) AluJo|SINE|Alu -24895 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 347-430 chr6 40492768 40493096 + 2 NA intron (NM_020737, intron 1 of 2) L2a|LINE|L2 94432 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 403-155 chr2 68420740 68421034 + 2 NA Intergenic Intergenic 46407 NM_001024680 554251 Hs.164117 NM_001024680 ENSG00000204923 FBXO48 - F-box protein 48 protein-coding 196-122 chr2 49979976 49980099 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -5834 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 376-16 chr1 115622197 115622389 + 2 NA Intergenic L1MEc|LINE|L1 -19677 NM_001172411 81839 Hs.515130 NM_138959 ENSG00000173218 VANGL1 KITENIN|LPP2|STB2|STBM2 VANGL planar cell polarity protein 1 protein-coding 212-326 chr8 114056751 114056898 + 2 NA Intergenic MER67C|LTR|ERV1 -619885 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 258-194 chr2 113785430 113785603 + 2 NA Intergenic Intergenic -28874 NR_104470 80255 Hs.355655 NM_025181 ENSG00000115084 SLC35F5 - solute carrier family 35 member F5 protein-coding 259-6 chr1 43154100 43154291 + 2 NA intron (NM_001101376, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat 6291 NM_001101376 440585 Hs.657614 NM_001101376 ENSG00000186973 FAM183A - family with sequence similarity 183 member A protein-coding 342-332 chr3 143559626 143559822 + 2 NA intron (NM_173653, intron 8 of 15) intron (NM_173653, intron 8 of 15) 217478 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 224-346 chr9 11271900 11272072 + 2 NA Intergenic L1ME1|LINE|L1 658780 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 549-80 chr17 67513181 67513618 + 2 NA intron (NM_181671, intron 1 of 9) (TATCTA)n|Simple_repeat|Simple_repeat -41814 NR_030385 693131 NR_030385 ENSG00000263690 MIR548D2 MIRN548D2 microRNA 548d-2 ncRNA 376-189 chr2 95129624 95129848 + 2 NA Intergenic L1MD1|LINE|L1 -7709 NR_136153 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 355-485 chr8 19601190 19601435 + 2 NA intron (NM_001354498, intron 2 of 9) intron (NM_001354498, intron 2 of 9) 1233 NM_001354499 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 667-15 chr10 65438280 65438871 + 2 NA Intergenic UCON61|Unknown|Unknown -132850 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 219-217 chr21 23888814 23888985 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 432478 NR_109963 101927869 Hs.555591 NR_109963 ENSG00000224832 LINC01689 - long intergenic non-protein coding RNA 1689 ncRNA 408-101 chr14 45537840 45538190 + 2 NA Intergenic Intergenic 177587 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 563-12 chr1 242743017 242743398 + 2 NA Intergenic L2|LINE|L2 -218510 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 270-176 chr2 22927666 22927856 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger 391282 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 289-441 chr7 82686668 82686891 + 2 NA Intergenic MIR|SINE|MIR -242823 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 250-424 chr8 76848647 76848831 + 2 NA intron (NM_024721, intron 6 of 10) intron (NM_024721, intron 6 of 10) 118111 NR_130460 100422921 NR_130460 ENSG00000266712 MIR3149 - microRNA 3149 ncRNA 164-15 chr10 70960285 70960403 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat 21291 NR_134313 105378349 Hs.119164 NR_134313 ENSG00000259267 LINC02622 - long intergenic non-protein coding RNA 2622 ncRNA 426-85 chr15 62913135 62913435 + 2 NA Intergenic Intergenic 89328 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 227-251 chr4 48770866 48771059 + 2 NA intron (NM_015030, intron 1 of 63) intron (NM_015030, intron 1 of 63) 9337 NM_015030 285527 Hs.595553 NM_015030 ENSG00000075539 FRYL AF4p12|KIAA0826|MOR2 FRY like transcription coactivator protein-coding 335-99 chr11 83784033 83784304 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -101743 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 322-378 chr4 81440214 81440427 + 2 NA intron (NM_152545, intron 10 of 13) intron (NM_152545, intron 10 of 13) 31587 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 234-130 chr17 33606684 33606850 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -73007 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 384-77 chr12 41847629 41847932 + 2 NA Intergenic Intergenic 83591 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 346-277 chr2 235304293 235304524 + 2 NA Intergenic Intergenic -189635 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 254-362 chr6 167271835 167272051 + 2 NA Intergenic MER34A1|LTR|ERV1 -19372 NM_001143947 54346 Hs.567508 NM_018974 ENSG00000112494 UNC93A Unc-93A|dJ366N23.1|dJ366N23.2 unc-93 homolog A protein-coding 322-479 chr7 18715091 18715371 + 2 NA intron (NM_058176, intron 11 of 22) intron (NM_058176, intron 11 of 22) 205961 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 361-110 chr12 72496516 72496800 + 2 NA intron (NM_013381, intron 5 of 18) intron (NM_013381, intron 5 of 18) -223149 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 350-218 chr2 52913858 52914134 + 2 NA Intergenic Intergenic -211381 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 264-436 chr9 27064276 27064464 + 2 NA 3' UTR (NM_001349928, exon 20 of 20) 3' UTR (NM_001349928, exon 20 of 20) -44771 NM_001290077 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 462-274 chr8 18140192 18140522 + 2 NA Intergenic MER4D|LTR|ERV1 -30110 NM_001291962 9 Hs.591847 NM_000662 ENSG00000171428 NAT1 AAC1|MNAT|NAT-1|NATI N-acetyltransferase 1 protein-coding 367-147 chr16 27421589 27421784 + 2 NA intron (NM_181079, intron 2 of 9) L1MB7|LINE|L1 -5585 NM_021798 50615 Hs.210546 NM_021798 ENSG00000103522 IL21R CD360|IMD56|NILR interleukin 21 receptor protein-coding 185-73 chr17 27191241 27191381 + 2 NA Intergenic ALR/Alpha|Satellite|centr -102070 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 297-362 chr5 26857575 26857763 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy 180917 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 298-211 chr2 52010795 52010950 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -359776 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 258-358 chr6 166348917 166349092 + 2 NA non-coding (NR_040022, exon 2 of 2) non-coding (NR_040022, exon 2 of 2) 6373 NR_040022 100289495 NR_040022 LOC100289495 - uncharacterized LOC100289495 ncRNA 510-60 chr12 70027890 70028319 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR 202877 NM_182530 196446 Hs.253773 NM_182530 ENSG00000166268 MYRFL C12orf15|C12orf28|bcm1377 myelin regulatory factor like protein-coding 366-339 chr5 27755193 27755506 + 2 NA Intergenic L1PA13|LINE|L1 283057 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 328-268 chr2 95147386 95147577 + 2 NA 3' UTR (NM_032788, exon 5 of 5) 3' UTR (NM_032788, exon 5 of 5) 12104 NM_001318005 84874 Hs.355664 NM_032788 ENSG00000144026 ZNF514 - zinc finger protein 514 protein-coding 255-105 chr14 46240643 46240836 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) 176580 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 329-8 chr1 60805748 60805955 + 2 NA intron (NR_110628, intron 1 of 5) L1M2|LINE|L1 19733 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 360-467 chr8 89859148 89859353 + 2 NA Intergenic MIRb|SINE|MIR -42618 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 467-215 chr5 12581979 12582334 + 2 NA intron (NR_033383, intron 1 of 3) intron (NR_033383, intron 1 of 3) 7299 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 302-276 chr3 9236820 9237030 + 2 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) 12721 NM_001033117 9901 Hs.654743 NM_014850 ENSG00000196220 SRGAP3 ARHGAP14|MEGAP|SRGAP2|WRP SLIT-ROBO Rho GTPase activating protein 3 protein-coding 407-104 chr16 76636696 76636976 + 2 NA intron (NR_110934, intron 2 of 3) MLT1E2|LTR|ERVL-MaLR 1838 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 652-68 chr2 124531588 124532103 + 2 NA intron (NM_130773, intron 10 of 23) LTR56|LTR|ERV1 506558 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 329-401 chr4 36628517 36628767 + 2 NA intron (NR_149124, intron 1 of 4) intron (NR_149124, intron 1 of 4) 13258 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 407-191 chr3 31337648 31337878 + 2 NA Intergenic L1MA2|LINE|L1 -175976 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 232-207 chr2 222309140 222309313 + 2 NA Intergenic Intergenic -9245 NR_136642 440934 Hs.732732 NR_136638 ENSG00000237732 CT75 - cancer/testis associated transcript 75 ncRNA 684-74 chr3 89331863 89332447 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 224534 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 314-77 chr10 95113963 95114143 + 2 NA Intergenic L1MA1|LINE|L1 -44556 NM_000770 1558 Hs.709188 NM_000770 ENSG00000138115 CYP2C8 CPC8|CYP2C8DM|CYPIIC8|MP-12/MP-20 cytochrome P450 family 2 subfamily C member 8 protein-coding 311-8 chr1 57515888 57516081 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -91063 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 463-109 chr16 80910126 80910490 + 2 NA Intergenic Intergenic -17712 NR_131947 100996425 Hs.125350 NR_131947 ENSG00000260896 ARLNC1 LINC02170|PRCAT47 androgen receptor regulated long noncoding RNA 1 ncRNA 300-311 chr4 32624081 32624262 + 2 NA Intergenic LTR53-int|LTR|ERVL 273133 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 311-451 chr6 147498575 147498800 + 2 NA Intergenic L1MC5|LINE|L1 -10003 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 426-5 chr1 55922608 55922989 + 2 NA intron (NR_147162, intron 1 of 2) intron (NR_147162, intron 1 of 2) 22165 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 317-491 chr8 103959466 103959663 + 2 NA intron (NR_145710, intron 17 of 29) AluSx3|SINE|Alu 140344 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 244-288 chr5 20409369 20409537 + 2 NA intron (NM_001349558, intron 1 of 15) L1MB2|LINE|L1 103902 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 280-213 chr2 131580031 131580208 + 2 NA Intergenic L1MA6|LINE|L1 -11923 NR_033885 440915 Hs.631267 NM_001017421 POTEKP ACT|ACTBL3|POTE2delta|POTEK POTE ankyrin domain family member K, pseudogene pseudo 366-409 chr7 42683579 42683938 + 2 NA intron (NR_110833, intron 1 of 2) intron (NR_110833, intron 1 of 2) 22689 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 475-217 chr5 22616286 22616613 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 236895 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 249-329 chr5 43928814 43928992 + 2 NA Intergenic Intergenic -325673 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 273-60 chr10 84100926 84101084 + 2 NA Intergenic MER21A|LTR|ERVL -38504 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 266 chr1 2860396 2860597 + 2 NA Intergenic Intergenic -59628 NM_001242672 100287898 Hs.632363 NM_001242672 ENSG00000215912 TTC34 - tetratricopeptide repeat domain 34 protein-coding 347-22 chr1 165682450 165682729 + 2 NA intron (NM_001365774, intron 3 of 10) intron (NM_001365774, intron 3 of 10) 15973 NM_001365774 223 Hs.2533 NM_000696 ENSG00000143149 ALDH9A1 ALDH4|ALDH7|ALDH9|E3|TMABADH aldehyde dehydrogenase 9 family member A1 protein-coding 237-282 chr5 6972018 6972198 + 2 NA Intergenic Intergenic -144187 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 637-106 chr7 17701340 17701722 + 2 NA Intergenic L1MA9|LINE|L1 -142622 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 324-394 chr4 72941236 72941455 + 2 NA Intergenic Intergenic 128371 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 171-31 chr14 36370219 36370359 + 2 NA Intergenic L2c|LINE|L2 -49613 NM_001144891 51562 Hs.368647 NM_016586 ENSG00000151332 MBIP - MAP3K12 binding inhibitory protein 1 protein-coding 344-61 chr10 99436451 99436787 + 2 NA Intergenic Intergenic -5995 NM_002079 2805 Hs.500756 NM_002079 ENSG00000120053 GOT1 AST1|ASTQTL1|GIG18|cAspAT|cCAT glutamic-oxaloacetic transaminase 1 protein-coding 346-352 chr4 62733327 62733634 + 2 NA Intergenic Intergenic -571715 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 284-323 chr5 59503343 59503502 + 2 NA intron (NM_001349242, intron 1 of 16) intron (NM_001349242, intron 1 of 16) 83076 NM_001349242 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 341-80 chr11 31207122 31207453 + 2 NA intron (NM_001367979, intron 9 of 38) intron (NM_001367979, intron 9 of 38) 162452 NM_181807 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 249-423 chr8 107072497 107072699 + 2 NA Intergenic Intergenic 263917 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 324-528 chr8 84511140 84511325 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 95748 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 306-178 chr16 6529037 6529245 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -244668 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 365-242 chr21 24521783 24522124 + 2 NA intron (NR_135519, intron 1 of 2) intron (NR_135519, intron 1 of 2) 93213 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 368-275 chr22 33349937 33350158 + 2 NA intron (NM_133642, intron 9 of 14) intron (NM_133642, intron 9 of 14) 86622 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 118-3 chr1 100618613 100618693 + 2 NA Intergenic MIRc|SINE|MIR 28351 NR_038914 100128787 Hs.536050 NR_038914 LINC01349 - long intergenic non-protein coding RNA 1349 ncRNA 512-35 chr10 51357888 51358329 + 2 NA intron (NM_001098512, intron 2 of 17) MLT1F|LTR|ERVL-MaLR 58535 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 535-77 chr14 75530883 75531247 + 2 NA intron (NM_006399, intron 2 of 2) intron (NM_006399, intron 2 of 2) 8596 NM_006399 10538 Hs.509964 NM_006399 ENSG00000156127 BATF B-ATF|BATF1|SFA-2|SFA2 basic leucine zipper ATF-like transcription factor protein-coding 379-79 chr13 45742685 45742928 + 2 NA Intergenic Intergenic 40337 NM_001286342 220082 Hs.186363 NM_152719 ENSG00000174015 SPERT CBY2|NURIT spermatid associated protein-coding 217-28 chr1 239349410 239349550 + 2 NA Intergenic Intergenic -37088 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 184-166 chr8 65949694 65949851 + 2 NA Intergenic Intergenic -65206 NM_001349432 85479 Hs.491885 NM_033105 ENSG00000147570 DNAJC5B CSP-beta DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 356-520 chrX 112482298 112482626 + 2 NA Intergenic L1MA9|LINE|L1 197476 NM_178175 340596 Hs.297420 NM_178175 ENSG00000182508 LHFPL1 - LHFPL tetraspan subfamily member 1 protein-coding 341-23 chr1 93952638 93952861 + 2 NA Intergenic MER11C|LTR|ERVK -43151 NM_001308253 2730 Hs.315562 NM_002061 ENSG00000023909 GCLM GLCLR glutamate-cysteine ligase modifier subunit protein-coding 341-73 chr10 116857022 116857213 + 2 NA intron (NM_001242699, intron 3 of 13) intron (NM_001242699, intron 3 of 13) -7395 NM_001330164 259217 Hs.648448 NM_025015 ENSG00000165868 HSPA12A - heat shock protein family A (Hsp70) member 12A protein-coding 525-269 chr8 121239535 121239869 + 2 NA Intergenic Intergenic -399644 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 579-122 chr4 127178635 127178980 + 2 NA Intergenic L2c|LINE|L2 -454150 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 379-4 chr1 32456887 32457255 + 2 NA Intergenic LTR80B|LTR|ERVL -8001 NM_001145720 728116 Hs.647658 NM_001145720 ENSG00000273274 ZBTB8B ZNF916B zinc finger and BTB domain containing 8B protein-coding 439-130 chr2 56953633 56954003 + 2 NA Intergenic L1ME2|LINE|L1 -768048 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 186-124 chr5 8019611 8019717 + 2 NA Intergenic L1MCa|LINE|L1 150516 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 326-384 chr4 130779167 130779335 + 2 NA Intergenic Intergenic 402890 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 318-519 chr7 80877878 80878069 + 2 NA intron (NM_006379, intron 2 of 17) intron (NM_006379, intron 2 of 17) 41078 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 333-437 chr5 28038407 28038671 + 2 NA Intergenic L2|LINE|L2 249126 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 361-420 chr7 95207868 95208147 + 2 NA intron (NM_001166160, intron 7 of 19) L1ME3E|LINE|L1 116525 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 283-128 chr14 51457715 51457892 + 2 NA intron (NR_051990, intron 2 of 2) intron (NR_051990, intron 2 of 2) -31325 NM_001042481 122786 Hs.434914 NM_152330 ENSG00000139926 FRMD6 C14orf31|EX1|Willin|c14_5320 FERM domain containing 6 protein-coding 548-86 chr16 68602499 68603032 + 2 NA Intergenic AluYm1|SINE|Alu -42545 NM_001317196 1001 Hs.191842 NM_001793 ENSG00000062038 CDH3 CDHP|HJMD|PCAD cadherin 3 protein-coding 354-484 chr8 136863222 136863409 + 2 NA intron (NR_147196, intron 4 of 5) L1ME1|LINE|L1 332517 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 203-48 chr12 117612540 117612703 + 2 NA intron (NM_173598, intron 5 of 19) intron (NM_173598, intron 5 of 19) -250819 NM_001204218 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 457-32 chr10 115672658 115673032 + 2 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 521944 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 345-172 chr15 60601803 60602083 + 2 NA intron (NR_120342, intron 5 of 5) intron (NR_120342, intron 5 of 5) -9417 NM_134262 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 333-69 chr10 105403802 105404020 + 2 NA Intergenic L1MC1|LINE|L1 416422 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 248-211 chr2 211162229 211162445 + 2 NA Intergenic Intergenic 544766 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 761-10 chr10 113066244 113066904 + 2 NA intron (NM_001198528, intron 4 of 14) intron (NM_001198528, intron 4 of 14) 21219 NR_132769 106635520 NR_132769 SNORA87 - small nucleolar RNA, H/ACA box 87 snoRNA 337-314 chr20 52601652 52601835 + 2 NA Intergenic MamSINE1|SINE|tRNA-RTE -19095 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 481-92 chr14 65548428 65548720 + 2 NA intron (NM_004480, intron 2 of 9) L1MD3|LINE|L1 77472 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 188-147 chr4 33406190 33406329 + 2 NA Intergenic L2|LINE|L2 633634 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 479-227 chr7 26409087 26409353 + 2 NA intron (NR_148503, intron 2 of 6) L1P3|LINE|L1 -9802 NR_136272 105375304 Hs.735352 NR_136270 ENSG00000225792 LOC105375304 - uncharacterized LOC105375304 ncRNA 231-295 chr5 122736977 122737139 + 2 NA Intergenic Intergenic -6498 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 400-25 chr1 232192535 232192882 + 2 NA Intergenic MIR|SINE|MIR 266874 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 304-29 chr1 211045626 211045874 + 2 NA intron (NM_002238, intron 5 of 10) L1MA10|LINE|L1 87624 NR_046784 100874296 Hs.737764 NR_046784 KCNH1-IT1 - KCNH1 intronic transcript 1 ncRNA 359-482 chr8 116781071 116781333 + 2 NA Intergenic Intergenic 14678 NM_032334 84294 Hs.86970 NM_032334 ENSG00000147679 UTP23 C8orf53 UTP23 small subunit processome component protein-coding 237-76 chr12 50844162 50844368 + 2 NA intron (NM_182559, intron 2 of 4) L1PA7|LINE|L1 1339 NM_182559 283471 Hs.125571 NM_182559 ENSG00000186452 TMPRSS12 CT151 transmembrane serine protease 12 protein-coding 402-171 chr2 156609559 156609835 + 2 NA Intergenic Intergenic 173318 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 320-135 chr13 53543711 53543955 + 2 NA Intergenic Intergenic -271586 NR_047488 100861552 Hs.224691 NR_047488 ENSG00000261517 LINC00558 - long intergenic non-protein coding RNA 558 ncRNA 197-167 chr5 46049702 46049833 + 2 NA Intergenic ALR/Alpha|Satellite|centr -353387 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 187-43 chr13 38796531 38796680 + 2 NA intron (NM_207361, intron 6 of 23) intron (NM_207361, intron 6 of 23) 30986 NR_146963 100874073 Hs.253994 NR_146963 FREM2-AS1 - FREM2 antisense RNA 1 ncRNA 361-26 chr1 221640850 221641155 + 2 NA Intergenic Kanga1|DNA|TcMar-Tc2 95898 NR_111939 11221 Hs.497822 NM_007207 ENSG00000143507 DUSP10 MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 386-73 chr12 22391627 22391912 + 2 NA Intergenic Intergenic -57055 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 364-254 chr21 20155923 20156240 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 102604 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 377-82 chr12 18309670 18309978 + 2 NA intron (NM_001288774, intron 5 of 32) Charlie1a|DNA|hAT-Charlie 48284 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 356-460 chr7 110139631 110139942 + 2 NA Intergenic L1MB1|LINE|L1 -179573 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 397-263 chr5 110994534 110994754 + 2 NA Intergenic L1M5|LINE|L1 -75436 NR_045089 85480 Hs.389874 NM_033035 ENSG00000145777 TSLP - thymic stromal lymphopoietin protein-coding 289-490 chr9 91939280 91939506 + 2 NA intron (NM_001318204, intron 1 of 7) L1ME3G|LINE|L1 10835 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 332-277 chr2 206717175 206717440 + 2 NA intron (NM_001093730, intron 1 of 11) intron (NM_001093730, intron 1 of 11) 1089 NM_001093730 391475 Hs.640667 NM_001093730 ENSG00000232125 DYTN - dystrotelin protein-coding 311-223 chr19 9098953 9099258 + 2 NA Intergenic AluJr|SINE|Alu 4201 NM_001005193 390882 Hs.553774 NM_001005193 ENSG00000170923 OR7G2 OR19-6|OST260 olfactory receptor family 7 subfamily G member 2 protein-coding 239-101 chr14 54688014 54688234 + 2 NA intron (NM_015589, intron 1 of 11) intron (NM_015589, intron 1 of 11) -66709 NM_001161577 23034 Hs.98259 NM_015589 ENSG00000020577 SAMD4A SAMD4|SMAUG|SMAUG1|SMG|SMGA sterile alpha motif domain containing 4A protein-coding 237-334 chr6 140762628 140762781 + 2 NA Intergenic Intergenic 78890 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 348-384 chr4 181009656 181009950 + 2 NA Intergenic (AATAA)n|Simple_repeat|Simple_repeat 149346 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 355-183 chr16 53526504 53526701 + 2 NA Intergenic MER8|DNA|TcMar-Tigger -23298 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 668-114 chr9 114469439 114469944 + 2 NA intron (NM_001083885, intron 2 of 11) intron (NM_001083885, intron 2 of 11) 33524 NM_001083885 25861 Hs.93836 NM_015404 ENSG00000095397 WHRN CIP98|DFNB31|PDZD7B|USH2D|WI whirlin protein-coding 456-319 chr8 103534150 103534511 + 2 NA intron (NM_001348497, intron 1 of 22) Cheshire|DNA|hAT-Charlie -32420 NR_145698 105375690 NR_145697 LOC105375690 - uncharacterized LOC105375690 ncRNA 140-30 chr17 31251319 31251395 + 2 NA intron (NM_000267, intron 30 of 56) intron (NM_000267, intron 30 of 56) 45882 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 169-21 chr11 90662251 90662356 + 2 NA intron (NR_104190, intron 3 of 6) intron (NR_104190, intron 3 of 6) -106446 NR_039711 100616186 NR_039711 ENSG00000266703 MIR4490 - microRNA 4490 ncRNA 298-476 chr8 126287806 126288080 + 2 NA Intergenic Intergenic -37552 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 270-228 chr22 48206738 48206989 + 2 NA Intergenic Intergenic -67501 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 260-360 chr5 146347026 146347229 + 2 NA Intergenic Intergenic 8288 NM_002700 5459 Hs.553499 NM_002700 ENSG00000091010 POU4F3 BRN3C|DFNA15|DFNA42|DFNA52 POU class 4 homeobox 3 protein-coding 315-14 chr1 85861127 85861325 + 2 NA intron (NM_152890, intron 37 of 59) L1MB8|LINE|L1 -152793 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 445-208 chr4 131200207 131200526 + 2 NA Intergenic L1MA8|LINE|L1 -564472 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 248-22 chr1 207121612 207121767 + 2 NA intron (NM_000715, intron 4 of 11) L1M7|LINE|L1 17456 NM_000715 722 Hs.1012 NM_000715 ENSG00000123838 C4BPA C4BP|PRP complement component 4 binding protein alpha protein-coding 352-436 chr5 159025057 159025285 + 2 NA intron (NM_182708, intron 5 of 14) intron (NM_182708, intron 5 of 14) 72785 NM_001364157 1879 Hs.573143 NM_024007 ENSG00000164330 EBF1 COE1|EBF|O/E-1|OLF1 EBF transcription factor 1 protein-coding 215-210 chr3 178703960 178704107 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 145183 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 458-10 chr1 209464027 209464435 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR 32098 NR_029622 406988 NR_029622 ENSG00000284485 MIR205 MIRN205|mir-205 microRNA 205 ncRNA 208-25 chr10 72028841 72028953 + 2 NA Intergenic L1M5|LINE|L1 59654 NM_001244950 9806 Hs.523009 NM_014767 ENSG00000107742 SPOCK2 testican-2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 protein-coding 248-26 chr1 240392730 240392869 + 2 NA intron (NM_020066, intron 15 of 17) intron (NM_020066, intron 15 of 17) 219356 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 516-188 chr4 54671681 54672052 + 2 NA intron (NM_000222, intron 1 of 20) L1MC5|LINE|L1 13938 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 558-62 chr15 72883072 72883403 + 2 NA Intergenic L1ME1|LINE|L1 -99479 NM_001365223 83440 Hs.562587 NM_031284 ENSG00000159322 ADPGK 2610017G09Rik|ADP-GK ADP dependent glucokinase protein-coding 321-151 chr12 129319935 129320179 + 2 NA intron (NM_133448, intron 4 of 8) L3|LINE|CR1 111456 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 430-343 chrX 82224792 82225110 + 2 NA Intergenic L1M4b|LINE|L1 1022849 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 444-112 chr19 28155350 28155623 + 2 NA Intergenic Intergenic -361546 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 433-29 chr10 89807612 89808001 + 2 NA Intergenic Intergenic -21687 NR_038382 643529 Hs.618956 NR_038382 ENSG00000232229 LINC00865 - long intergenic non-protein coding RNA 865 ncRNA 479-100 chr2 26053534 26053895 + 2 NA intron (NM_016131, intron 1 of 5) intron (NM_016131, intron 1 of 5) 19630 NM_016131 10890 Hs.467960 NM_016131 ENSG00000084733 RAB10 - RAB10, member RAS oncogene family protein-coding 396-183 chr2 213613026 213613257 + 2 NA intron (NR_047660, intron 9 of 14) L2a|LINE|L2 -144926 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 338-270 chr2 126056923 126057184 + 2 NA Intergenic LTR9|LTR|ERV1 60932 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 462-62 chr12 77466055 77466337 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -364698 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 210-165 chr22 34060638 34060784 + 2 NA Intergenic LTR67B|LTR|ERVL -137823 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 481-31 chr10 57762639 57763085 + 2 NA Intergenic Intergenic -458303 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 332-64 chr10 65246313 65246549 + 2 NA Intergenic Intergenic -321913 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 241-404 chr8 122651558 122651756 + 2 NA Intergenic L1M1|LINE|L1 42449 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 237-90 chr13 74898599 74898772 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie 341696 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 560-56 chr15 66906331 66906781 + 2 NA Intergenic Intergenic 49959 NR_135687 102723481 Hs.512978 NR_135687 ENSG00000259289 LINC02206 - long intergenic non-protein coding RNA 2206 ncRNA 138-4 chr1 82747611 82747742 + 2 NA Intergenic L1MC5a|LINE|L1 -155507 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 455-14 chr1 171725311 171725648 + 2 NA intron (NM_003762, intron 3 of 7) intron (NM_003762, intron 3 of 7) 16586 NR_033704 8674 Hs.6651 NM_003762 ENSG00000117533 VAMP4 VAMP-4|VAMP24 vesicle associated membrane protein 4 protein-coding 172-42 chr16 65178538 65178684 + 2 NA Intergenic Intergenic -2038 NR_110918 101927650 Hs.634008 NR_110918 ENSG00000259847 LINC02126 - long intergenic non-protein coding RNA 2126 ncRNA 391-171 chr2 65474280 65474619 + 2 NA Intergenic Intergenic -41850 NM_181784 200734 Hs.59332 NM_181784 ENSG00000198369 SPRED2 Spred-2 sprouty related EVH1 domain containing 2 protein-coding 559-15 chr10 78025170 78025634 + 2 NA intron (NM_007055, intron 3 of 30) HAL1b|LINE|L1 4113 NM_007055 11128 Hs.436896 NM_007055 ENSG00000148606 POLR3A ADDH|HLD7|RPC1|RPC155|WDRTS|hRPC155 RNA polymerase III subunit A protein-coding 194-37 chr12 12668982 12669117 + 2 NA intron (NM_006143, intron 3 of 3) intron (NM_006143, intron 3 of 3) 27134 NM_006143 2842 Hs.657862 NM_006143 ENSG00000183150 GPR19 - G protein-coupled receptor 19 protein-coding 419-133 chr2 23251663 23251942 + 2 NA Intergenic Intergenic -133377 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 355-211 chr18 13672058 13672316 + 2 NA intron (NM_152352, intron 2 of 3) intron (NM_152352, intron 2 of 3) 30429 NM_001276251 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 281-18 chr1 183492719 183492949 + 2 NA intron (NM_001174061, intron 1 of 21) L1MEc|LINE|L1 20335 NM_001174061 9887 Hs.591463 NM_014837 ENSG00000116698 SMG7 C1orf16|EST1C|SGA56M SMG7 nonsense mediated mRNA decay factor protein-coding 382-16 chr1 165799792 165800089 + 2 NA Intergenic AluJb|SINE|Alu -27674 NM_012474 7371 Hs.458360 NM_012474 ENSG00000143179 UCK2 TSA903|UK|UMPK uridine-cytidine kinase 2 protein-coding 272-491 chrX 97707683 97707867 + 2 NA Intergenic Intergenic -143240 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 376-206 chr2 228594185 228594438 + 2 NA intron (NR_151716, intron 1 of 3) L3|LINE|CR1 17084 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 288-20 chr1 105715207 105715425 + 2 NA Intergenic Intergenic -96381 NR_125955 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 318-374 chr3 152080261 152080511 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 125043 NR_136178 101928166 NR_136178 LOC101928166 - uncharacterized LOC101928166 ncRNA 370-441 chr8 93556788 93557002 + 2 NA intron (NR_033858, intron 6 of 10) L2b|LINE|L2 143538 NR_033858 642924 Hs.434882 NR_033858 ENSG00000246662 LINC00535 - long intergenic non-protein coding RNA 535 ncRNA 227-295 chr5 127249256 127249459 + 2 NA Intergenic L1ME4a|LINE|L1 -41407 NM_001308121 84466 Hs.438709 NM_032446 ENSG00000145794 MEGF10 EMARDD multiple EGF like domains 10 protein-coding 290-392 chr6 94379420 94379609 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 661211 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 631-87 chr3 105996007 105996434 + 2 NA Intergenic L1PA3|LINE|L1 -126819 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 518-228 chr5 44197247 44197669 + 2 NA Intergenic L1M4b|LINE|L1 -191274 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 315-73 chr10 120030713 120031015 + 2 NA Intergenic Intergenic 72351 NR_039830 100616322 NR_039830 ENSG00000265370 MIR4682 - microRNA 4682 ncRNA 442-165 chr21 14522997 14523356 + 2 NA intron (NM_001256370, intron 2 of 8) intron (NM_001256370, intron 2 of 8) 23139 NM_022136 64092 Hs.473341 NM_022136 ENSG00000155307 SAMSN1 HACS1|NASH1|SASH2|SH3D6B|SLy2 SAM domain, SH3 domain and nuclear localization signals 1 protein-coding 252-276 chr3 128928728 128928969 + 2 NA intron (NM_001348520, intron 11 of 14) L1MB7|LINE|L1 49228 NM_014049 28976 Hs.567482 NM_014049 ENSG00000177646 ACAD9 MC1DN20|NPD002 acyl-CoA dehydrogenase family member 9 protein-coding 739-27 chr17 65420659 65421220 + 2 NA Intergenic MIR|SINE|MIR -36602 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 643-53 chr2 74641002 74641476 + 2 NA intron (NM_001321739, intron 1 of 10) intron (NM_001321739, intron 1 of 10) 6798 NM_138804 130951 Hs.348645 NM_138804 ENSG00000159374 M1AP C2orf65|D6Mm5e|SPATA37 meiosis 1 associated protein protein-coding 332-329 chr3 82601371 82601577 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 615332 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 281-57 chr11 9648520 9648722 + 2 NA Intergenic L1MB2|LINE|L1 -15456 NM_015055 23075 Hs.153026 NM_015055 ENSG00000133789 SWAP70 HSPC321|SWAP-70 switching B cell complex subunit SWAP70 protein-coding 443-213 chr4 11117697 11118085 + 2 NA Intergenic MIRb|SINE|MIR -250936 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 584-83 chr2 173761309 173761703 + 2 NA Intergenic Intergenic 202374 NM_001017371 6670 Hs.531587 NM_003111 ENSG00000172845 SP3 SPR2 Sp3 transcription factor protein-coding 286-406 chr7 21528173 21528446 + 2 NA Intergenic MIR|SINE|MIR -14730 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 530-239 chr7 97242119 97242504 + 2 NA Intergenic L1PA7|LINE|L1 125718 NM_020186 57001 Hs.592269 NM_020186 ENSG00000196636 SDHAF3 ACN9|DC11|LYRM10|Sdh7 succinate dehydrogenase complex assembly factor 3 protein-coding 275-360 chr8 71215099 71215268 + 2 NA intron (NM_001370336, intron 16 of 17) intron (NM_001370336, intron 16 of 17) 141523 NM_172058 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 172-122 chr7 10469777 10469897 + 2 NA intron (NR_147499, intron 2 of 2) intron (NR_147499, intron 2 of 2) -232839 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 280-259 chr3 79616555 79616808 + 2 NA intron (NM_002941, intron 1 of 30) L1PB4|LINE|L1 108794 NR_037488 100500877 NR_037488 ENSG00000265193 MIR3923 - microRNA 3923 ncRNA 519-28 chr10 109965737 109966125 + 2 NA intron (NR_038943, intron 2 of 4) L1MC5|LINE|L1 -30442 NM_001320591 120 Hs.501012 NM_001121 ENSG00000148700 ADD3 ADDL|CPSQ3 adducin 3 protein-coding 393-253 chr4 160421644 160421884 + 2 NA Intergenic Intergenic -643980 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 316-267 chr2 75737548 75737827 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -26772 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 326-132 chr12 131252064 131252238 + 2 NA Intergenic Intergenic 45821 NR_135045 107161159 Hs.730119 NR_135045 ENSG00000248703 LINC02415 - long intergenic non-protein coding RNA 2415 ncRNA 296-166 chr16 8542758 8543048 + 2 NA intron (NM_001290098, intron 2 of 2) intron (NM_001290098, intron 2 of 2) 46935 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 185-148 chr4 69784444 69784538 + 2 NA Intergenic Intergenic -23871 NM_014465 27284 Hs.129742 NM_014465 ENSG00000173597 SULT1B1 ST1B1|ST1B2|SULT1B2 sulfotransferase family 1B member 1 protein-coding 453-8 chr1 77563562 77563900 + 2 NA 3' UTR (NM_001308237, exon 14 of 14) 3' UTR (NM_001308237, exon 14 of 14) 118927 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 390-113 chr14 103204827 103205175 + 2 NA Intergenic LTR76|LTR|ERV1 -15973 NR_033938 100131366 Hs.147881 NR_033938 ENSG00000251533 LINC00605 - long intergenic non-protein coding RNA 605 ncRNA 500-266 chr7 42539963 42540401 + 2 NA Intergenic L1ME1|LINE|L1 166265 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 306-189 chr17 11266735 11267001 + 2 NA intron (NM_001173461, intron 2 of 3) intron (NM_001173461, intron 2 of 3) 25445 NM_001173461 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 248-296 chr4 168085655 168085827 + 2 NA Intergenic L1MEb|LINE|L1 -6796 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 569-188 chr9 110913137 110913561 + 2 NA intron (NM_001351417, intron 5 of 5) intron (NM_001351417, intron 5 of 5) 123431 NM_001351420 1902 Hs.126667 NM_001401 ENSG00000198121 LPAR1 EDG2|GPR26|Gpcr26|LPA1|Mrec1.3|VZG1|edg-2|rec.1.3|vzg-1 lysophosphatidic acid receptor 1 protein-coding 229-326 chr5 161739783 161739965 + 2 NA Intergenic Intergenic 54153 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 334-445 chr5 152668471 152668781 + 2 NA intron (NR_109877, intron 4 of 4) L1MA8|LINE|L1 -263347 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 384-405 chr9 117240650 117240876 + 2 NA intron (NM_014010, intron 2 of 21) MIR3|SINE|MIR -59562 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 167-114 chr9 81972046 81972167 + 2 NA Intergenic Intergenic -16666 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 189-144 chr4 58115544 58115704 + 2 NA Intergenic Intergenic 420704 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 289-148 chr15 53537670 53537947 + 2 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) 3044 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 706-79 chr9 108087819 108088394 + 2 NA Intergenic Intergenic -598337 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 386-286 chr5 35591371 35591719 + 2 NA Intergenic Intergenic -26318 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 322-96 chr11 92087382 92087649 + 2 NA Intergenic Intergenic -137519 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 407-290 chr7 36927285 36927615 + 2 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -8018 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 391-58 chr11 50215434 50215716 + 2 NA Intergenic Intergenic 82887 NR_003034 441601 Hs.144683 NR_003034 ENSG00000255042 LOC441601 - septin 7 pseudogene pseudo 552-78 chr15 95029933 95030296 + 2 NA Intergenic L1ME4b|LINE|L1 174751 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 316-107 chr11 85902300 85902544 + 2 NA intron (NM_001286159, intron 7 of 10) HAL1|LINE|L1 47321 NM_173556 220047 Hs.567774 NM_173556 ENSG00000150676 CCDC83 CT148|HSD9|KP-CoT-23 coiled-coil domain containing 83 protein-coding 802-42 chr3 47808052 47808808 + 2 NA intron (NM_001330990, intron 2 of 22) AluJr4|SINE|Alu 5292 NM_138615 22907 Hs.517948 NM_014966 ENSG00000132153 DHX30 DDX30|NEDMIAL|RETCOR DExH-box helicase 30 protein-coding 444-200 chr5 100423070 100423464 + 2 NA Intergenic LTR25-int|LTR|ERV1 -35013 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 506-216 chr4 167538219 167538487 + 2 NA Intergenic L1M4|LINE|L1 -303763 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 259-73 chr11 78747691 78747857 + 2 NA intron (NM_001098816, intron 19 of 33) intron (NM_001098816, intron 19 of 33) -172910 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 560-116 chr3 126562531 126562875 + 2 NA Intergenic L1MD1|LINE|L1 -3771 NR_130715 152065 Hs.178210 NM_152533 ENSG00000180697 C3orf22 - chromosome 3 open reading frame 22 protein-coding 369-398 chr8 46907980 46908340 + 2 NA Intergenic Intergenic 67274 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 307-489 chr8 120267153 120267394 + 2 NA intron (NM_021110, intron 25 of 47) intron (NM_021110, intron 25 of 47) 142171 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 318-518 chr7 70904627 70904937 + 2 NA Intergenic Intergenic -227362 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 338-33 chr1 225087483 225087724 + 2 NA intron (NM_001367479, intron 21 of 85) L1ME1|LINE|L1 157928 NM_001367479 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 224-311 chr8 27198947 27199113 + 2 NA Intergenic L1MEc|LINE|L1 59374 NM_001283054 81551 Hs.201058 NM_030795 ENSG00000015592 STMN4 RB3 stathmin 4 protein-coding 286-291 chr3 110824906 110825188 + 2 NA Intergenic Intergenic 244912 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 229-155 chr18 6698844 6699004 + 2 NA Intergenic L1ME1|LINE|L1 -30792 NM_001366231 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 282-252 chr2 221648872 221649108 + 2 NA Intergenic Intergenic -74788 NM_001304536 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 319-479 chr6 152867750 152867957 + 2 NA Intergenic Intergenic 115188 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 328-95 chr12 608935 609116 + 2 NA intron (NM_016533, intron 1 of 3) CpG 1391 NM_001294345 4815 Hs.655804 NM_016533 ENSG00000171840 NINJ2 - ninjurin 2 protein-coding 350-250 chr2 150274697 150274973 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -17828 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 403-12 chr1 154804252 154804620 + 2 NA intron (NM_170782, intron 2 of 7) intron (NM_170782, intron 2 of 7) 55440 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 486-114 chr17 60969265 60969603 + 2 NA intron (NM_001330413, intron 14 of 25) L1MEf|LINE|L1 291583 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 351-511 chr9 26122433 26122641 + 2 NA Intergenic Intergenic 55862 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 240-117 chr13 31426979 31427162 + 2 NA Intergenic L2c|LINE|L2 227095 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 215-227 chr4 83191237 83191409 + 2 NA Intergenic Intergenic -76594 NM_001130715 51316 Hs.546392 NM_016619 ENSG00000145287 PLAC8 C15|DGIC|PNAS-144|onzin placenta associated 8 protein-coding 350-321 chr3 112955873 112956087 + 2 NA intron (NM_138806, intron 1 of 7) L1M1|LINE|L1 19123 NM_138940 131450 Hs.309158 NM_138806 ENSG00000163606 CD200R1 CD200R|HCRTR2|MOX2R|OX2R CD200 receptor 1 protein-coding 682-17 chr11 81279306 81279847 + 2 NA Intergenic Intergenic -516773 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 214-322 chr8 82925976 82926177 + 2 NA intron (NR_134295, intron 2 of 3) MLT1H|LTR|ERVL-MaLR 13972 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 291-79 chr11 97759901 97760096 + 2 NA Intergenic Intergenic 1251573 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 317-344 chr4 45969511 45969821 + 2 NA Intergenic L1M2|LINE|L1 154388 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 235-169 chr2 68098482 68098711 + 2 NA Intergenic Intergenic -35592 NM_001190265 10438 Hs.602900 NM_006333 ENSG00000197223 C1D LRP1|Rrp47|SUN-CoR|SUNCOR|hC1D C1D nuclear receptor corepressor protein-coding 229-158 chr18 30237640 30237843 + 2 NA Intergenic L1MC4a|LINE|L1 -61169 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 244-302 chr5 62581106 62581325 + 2 NA exon (NM_181506, exon 2 of 2) exon (NM_181506, exon 2 of 2) 2396 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 535-56 chr12 76138989 76139499 + 2 NA Intergenic AluJb|SINE|Alu -54559 NM_001307924 4673 Hs.524599 NM_004537 ENSG00000187109 NAP1L1 NAP1|NAP1L|NRP nucleosome assembly protein 1 like 1 protein-coding 447-44 chr11 101188828 101189138 + 2 NA Intergenic Intergenic -59170 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 360-27 chr10 12576029 12576248 + 2 NA intron (NM_001351032, intron 4 of 11) Charlie7|DNA|hAT-Charlie -2615 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 309-388 chr4 59035626 59035858 + 2 NA intron (NR_133942, intron 1 of 1) intron (NR_133942, intron 1 of 1) 22169 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 212-43 chr10 66704597 66704804 + 2 NA intron (NM_001127384, intron 9 of 17) Tigger4|DNA|TcMar-Tigger -221336 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 652-4 chr1 57843331 57843792 + 2 NA intron (NM_001353980, intron 3 of 5) L2c|LINE|L2 -17020 NR_104362 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 347-104 chr12 105443000 105443173 + 2 NA Intergenic MER110-int|LTR|ERV1 112395 NM_001145199 387882 Hs.368938 NM_207376 ENSG00000235162 C12orf75 AGD3|OCC-1|OCC1 chromosome 12 open reading frame 75 protein-coding 386-151 chr19 46084817 46085164 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -7361 NR_163177 444882 Hs.531310 NM_001002923 ENSG00000204869 IGFL4 - IGF like family member 4 protein-coding 161-115 chr8 74423260 74423403 + 2 NA intron (NM_001362931, intron 5 of 5) (AT)n|Simple_repeat|Simple_repeat 72928 NM_001362931 54332 Hs.168950 NM_018972 ENSG00000104381 GDAP1 CMT4|CMT4A|CMTRIA ganglioside induced differentiation associated protein 1 protein-coding 311-291 chr20 4305834 4306094 + 2 NA Intergenic Intergenic -56677 NM_000678 146 Hs.557 NM_000678 ENSG00000171873 ADRA1D ADRA1|ADRA1A|ADRA1R|ALPHA1|DAR|dJ779E11.2 adrenoceptor alpha 1D protein-coding 235-170 chr2 69617014 69617226 + 2 NA intron (NM_014911, intron 2 of 21) intron (NM_014911, intron 2 of 21) 26619 NM_014911 22848 Hs.468878 NM_014911 ENSG00000115977 AAK1 - AP2 associated kinase 1 protein-coding 218-284 chr6 47046273 47046485 + 2 NA Intergenic L1MA3|LINE|L1 -4047 NM_153840 266977 Hs.733762 NM_025048 ENSG00000153292 ADGRF1 GPR110|KPG_012|PGR19|hGPCR36 adhesion G protein-coupled receptor F1 protein-coding 239-403 chr8 84218038 84218257 + 2 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 33481 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 246-113 chr14 45588466 45588632 + 2 NA Intergenic Intergenic 127053 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 242-208 chr2 238553140 238553314 + 2 NA intron (NR_037809, intron 1 of 2) L1M6|LINE|L1 2272 NR_037809 151171 Hs.652076 NR_037809 ENSG00000225493 LINC01107 - long intergenic non-protein coding RNA 1107 ncRNA 253-223 chr20 21624600 21624770 + 2 NA intron (NR_109878, intron 3 of 4) HAL1|LINE|L1 54661 NR_109880 101929625 Hs.542413 NR_109880 LINC01727 - long intergenic non-protein coding RNA 1727 ncRNA 431-27 chr1 218748670 218749003 + 2 NA intron (NR_031644, intron 4 of 6) L1MA3|LINE|L1 169675 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 135-74 chr9 90650882 90650974 + 2 NA Intergenic L1MB3|LINE|L1 -8104 NM_017594 54769 Hs.165636 NM_017594 ENSG00000165023 DIRAS2 Di-Ras2 DIRAS family GTPase 2 protein-coding 300-83 chr12 10520861 10521117 + 2 NA intron (NM_001357731, intron 1 of 1) MER102b|DNA|hAT-Charlie 15096 NM_001357731 255308 Hs.547382 NM_001357731 ENSG00000180574 EIF2S3B EIF2S3L|eIF-2gA|eIF2gA eukaryotic translation initiation factor 2 subunit gamma B protein-coding 303-174 chr18 10378689 10378899 + 2 NA Intergenic Intergenic 35576 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 568-183 chr7 18975445 18975796 + 2 NA intron (NM_001321868, intron 24 of 25) intron (NM_001321868, intron 24 of 25) 142016 NR_149001 7291 Hs.66744 NM_000474 ENSG00000122691 TWIST1 ACS3|BPES2|BPES3|CRS|CRS1|CSO|SCS|SWCOS|TWIST|bHLHa38 twist family bHLH transcription factor 1 protein-coding 319-281 chr2 216824876 216825121 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 35066 NM_003284 7141 Hs.3017 NM_003284 ENSG00000118245 TNP1 TP1 transition protein 1 protein-coding 293-91 chr12 95091221 95091470 + 2 NA intron (NM_018351, intron 17 of 20) MamRep434|DNA|TcMar-Tigger -17727 NM_001127362 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 497-272 chr8 9835160 9835485 + 2 NA Intergenic L1MEg|LINE|L1 68007 NR_024281 157627 Hs.12513 NR_024281 ENSG00000253230 LINC00599 Rncr3 long intergenic non-protein coding RNA 599 ncRNA 413-108 chr16 71327738 71327987 + 2 NA Intergenic MIRb|SINE|MIR -30851 NM_007088 794 Hs.106857 NM_001740 ENSG00000172137 CALB2 CAB29|CAL2|CR calbindin 2 protein-coding 291-117 chr14 36095659 36095886 + 2 NA intron (NR_073454, intron 1 of 2) intron (NR_073454, intron 1 of 2) 25345 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 473-269 chr8 77462312 77462751 + 2 NA intron (NR_125830, intron 1 of 2) LTR78|LTR|ERV1 11834 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 808-56 chr8 50248438 50248882 + 2 NA intron (NR_135797, intron 2 of 20) intron (NR_135797, intron 2 of 20) 84529 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 308-55 chr10 39493249 39493543 + 2 NA Intergenic ALR/Alpha|Satellite|centr 796800 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 253-207 chr2 193154830 193155033 + 2 NA Intergenic Intergenic 405086 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 270-310 chr5 100020282 100020518 + 2 NA Intergenic Intergenic 367854 NR_027503 100133050 Hs.534796 NR_027503 LOC100133050 - glucuronidase beta pseudogene pseudo 406-261 chr6 84578168 84578543 + 2 NA Intergenic Intergenic -103426 NR_132100 105377880 Hs.171384 NR_132100 ENSG00000231776 LINC01611 TCONS_l2_00025430 long intergenic non-protein coding RNA 1611 ncRNA 149-46 chr18 64350898 64351019 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -90903 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 287-171 chr18 30308155 30308368 + 2 NA Intergenic Intergenic 9351 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 662-3 chr1 105527467 105528100 + 2 NA Intergenic HERVL-int|LTR|ERVL 91152 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 298-59 chr10 105083471 105083762 + 2 NA intron (NM_014978, intron 5 of 26) Tigger20a|DNA|TcMar-Tigger -417400 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 207-12 chr1 85450202 85450401 + 2 NA intron (NM_001134445, intron 2 of 6) MIRc|SINE|MIR 14858 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 234-187 chr2 134484793 134484956 + 2 NA intron (NM_030923, intron 5 of 7) HAL1|LINE|L1 230802 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 492-69 chr12 103271229 103271533 + 2 NA intron (NR_103526, intron 6 of 10) intron (NR_103526, intron 6 of 10) 119539 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 285-277 chr3 96593027 96593185 + 2 NA Intergenic Intergenic -221488 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 423-219 chr5 41142124 41142439 + 2 NA 3' UTR (NM_001115131, exon 18 of 18) 3' UTR (NM_001115131, exon 18 of 18) -70939 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 258-248 chr3 2673250 2673406 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -218887 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 221-110 chr17 47176898 47177074 + 2 NA intron (NM_001256, intron 2 of 18) intron (NM_001256, intron 2 of 18) 12309 NM_001353050 996 Hs.463295 NM_001256 ENSG00000004897 CDC27 ANAPC3|APC3|CDC27Hs|D0S1430E|D17S978E|H-NUC|HNUC|NUC2 cell division cycle 27 protein-coding 281-216 chr2 104720802 104721003 + 2 NA Intergenic Intergenic 36817 NR_038231 284998 Hs.410180 NR_038231 ENSG00000234177 LINC01114 PANCAT long intergenic non-protein coding RNA 1114 ncRNA 499-140 chr2 227711069 227711414 + 2 NA intron (NM_001371413, intron 1 of 6) AluSx1|SINE|Alu 3383 NM_001371411 232-117 chr15 94364533 94364720 + 2 NA intron (NM_018349, intron 9 of 21) intron (NM_018349, intron 9 of 21) 8696 NM_001159644 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 240-341 chr5 8175917 8176148 + 2 NA Intergenic Intergenic 281532 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 562-174 chr5 46032347 46032728 + 2 NA Intergenic L1PA2|LINE|L1 -336157 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 439-301 chr9 17429438 17429739 + 2 NA intron (NM_001365029, intron 18 of 25) MIRc|SINE|MIR -149478 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 354-286 chr3 23348464 23348766 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 145288 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 313-549 chr8 143181144 143181345 + 2 NA Intergenic Intergenic -20590 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 367-24 chr1 117321041 117321242 + 2 NA non-coding (NR_126408, exon 3 of 3) non-coding (NR_126408, exon 3 of 3) 25675 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 486-155 chr2 142382718 142383156 + 2 NA Intergenic Intergenic -251236 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 803-59 chr8 131436884 131437619 + 2 NA Intergenic L1MA4|LINE|L1 -396342 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 188-225 chrY 56830909 56831049 + 2 NA Intergenic Intergenic -123276 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 310-242 chr2 78380479 78380711 + 2 NA Intergenic L1ME4b|LINE|L1 -89864 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 234-349 chr6 153530712 153530933 + 2 NA Intergenic L1PA16|LINE|L1 -399540 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 212-41 chr10 61500720 61500866 + 2 NA Intergenic Intergenic 20752 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 386-320 chr7 8743084 8743401 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 309633 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 266-282 chr4 54985328 54985587 + 2 NA Intergenic L1M5|LINE|L1 140138 NM_002253 3791 Hs.479756 NM_002253 ENSG00000128052 KDR CD309|FLK1|VEGFR|VEGFR2 kinase insert domain receptor protein-coding 250-466 chrX 17446966 17447189 + 2 NA intron (NM_198270, intron 1 of 7) intron (NM_198270, intron 1 of 7) 21196 NR_039925 100616249 NR_039925 ENSG00000265465 MIR4768 - microRNA 4768 ncRNA 426-196 chr4 28592736 28593007 + 2 NA Intergenic Intergenic -226711 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 342-247 chr2 122337261 122337509 + 2 NA Intergenic Intergenic 581734 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 281-69 chr11 72897519 72897735 + 2 NA intron (NM_014824, intron 10 of 19) MIRb|SINE|MIR 83216 NM_001318766 89849 Hs.653186 NM_033388 ENSG00000168010 ATG16L2 ATG16B|WDR80 autophagy related 16 like 2 protein-coding 441-144 chr20 34195360 34195718 + 2 NA Intergenic Intergenic -64826 NM_001672 434 Hs.659995 NM_001672 ENSG00000101440 ASIP AGSW|AGTI|AGTIL|ASP|SHEP9 agouti signaling protein protein-coding 237-117 chr15 54117842 54118013 + 2 NA intron (NM_001329919, intron 2 of 31) L1MA4|LINE|L1 105279 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 339-531 chr7 52379695 52379913 + 2 NA Intergenic L1MB2|LINE|L1 -655829 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 330-106 chr11 123190623 123190849 + 2 NA intron (NM_024769, intron 1 of 6) intron (NM_024769, intron 1 of 6) 4512 NM_024769 79827 Hs.591949 NM_024769 ENSG00000166250 CLMP ACAM|ASAM|CSBM|CSBS CXADR like membrane protein protein-coding 277-327 chr5 64669855 64670032 + 2 NA Intergenic MLT2B1|LTR|ERVL -20560 NM_001164442 100132916 Hs.591776 NM_001164442 ENSG00000145642 SHISAL2B FAM159B shisa like 2B protein-coding 382-389 chr7 112028135 112028361 + 2 NA intron (NM_001363540, intron 1 of 52) intron (NM_001363540, intron 1 of 52) 178151 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 309-215 chr18 34111278 34111483 + 2 NA intron (NM_001353232, intron 2 of 9) MLT1A0|LTR|ERVL-MaLR -62768 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 223-112 chr16 68828577 68828754 + 2 NA intron (NM_001317185, intron 14 of 15) intron (NM_001317185, intron 14 of 15) -14866 NM_024562 79613 Hs.13526 NM_024562 ENSG00000103047 TANGO6 TMCO7 transport and golgi organization 6 homolog protein-coding 320-319 chr21 14678846 14679076 + 2 NA Intergenic Tigger8|DNA|TcMar-Tigger -35854 NM_001256579 388813 Hs.334177 NM_001256579 LOC388813 - uncharacterized protein ENSP00000383407-like protein-coding 122-41 chr4 129624159 129624226 + 2 NA Intergenic Intergenic 147286 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 401-21 chr1 246100829 246101035 + 2 NA intron (NM_022743, intron 5 of 11) A-rich|Low_complexity|Low_complexity 316480 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 226-170 chr2 105408590 105408806 + 2 NA intron (NM_201557, intron 1 of 5) intron (NM_201557, intron 1 of 5) -9031 NM_001318894 2274 Hs.443687 NM_001450 ENSG00000115641 FHL2 AAG11|DRAL|FHL-2|SLIM-3|SLIM3 four and a half LIM domains 2 protein-coding 447-305 chrX 78716474 78716880 + 2 NA Intergenic L1PA3|LINE|L1 -31032 NM_001278000 2846 Hs.522701 NM_005296 ENSG00000147145 LPAR4 GPR23|LPA4|P2RY9|P2Y5-LIKE|P2Y9 lysophosphatidic acid receptor 4 protein-coding 226-244 chr4 13686220 13686397 + 2 NA intron (NR_121681, intron 2 of 3) L1MA7|LINE|L1 31129 NR_121681 101929071 Hs.543714 NR_121681 ENSG00000250634 LINC01182 - long intergenic non-protein coding RNA 1182 ncRNA 239-376 chr7 50990639 50990851 + 2 NA Intergenic L1ME1|LINE|L1 -197292 NM_001371008 923-6 chr14 54946756 54947343 + 2 NA intron (NM_007086, intron 24 of 25) intron (NM_007086, intron 24 of 25) -44223 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 336-542 chr8 85034940 85035137 + 2 NA Intergenic AluJb|SINE|Alu -72200 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 362-392 chr6 159438319 159438621 + 2 NA Intergenic Intergenic 54939 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 545-49 chr11 120446230 120446744 + 2 NA exon (NM_001301084, exon 17 of 41) exon (NM_001301084, exon 17 of 41) 61160 NM_001301084 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 295-252 chr20 14368652 14368900 + 2 NA intron (NM_001351663, intron 3 of 17) L1MB5|LINE|L1 -31109 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 235-154 chr2 6599587 6599721 + 2 NA Intergenic L1M3|LINE|L1 34133 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 308-338 chr4 66080618 66080830 + 2 NA Intergenic Intergenic -196100 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 182-159 chr6 147833687 147833837 + 2 NA Intergenic Intergenic 325072 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 279-219 chr20 35648385 35648608 + 2 NA TTS (NM_001198840) TTS (NM_001198840) 5413 NM_003915 8904 Hs.246413 NM_003915 ENSG00000214078 CPNE1 COPN1|CPN1 copine 1 protein-coding 289-391 chr5 130808720 130808954 + 2 NA Intergenic LTR43|LTR|ERV1 356419 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 245-72 chr11 41717316 41717466 + 2 NA intron (NR_120584, intron 1 of 5) MER4A1_|LTR|ERV1 2823 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 395-272 chr5 56421506 56421891 + 2 NA Intergenic Intergenic 60071 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 200-191 chr4 85417609 85417759 + 2 NA Intergenic Intergenic -57466 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 465-219 chr5 35285727 35286150 + 2 NA Intergenic Intergenic -55451 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 230-155 chr18 60923947 60924127 + 2 NA Intergenic Intergenic -409393 NM_031891 28316 Hs.671510 NM_031891 ENSG00000101542 CDH20 CDH7L3|Cdh7 cadherin 20 protein-coding 425-31 chr10 21187099 21187388 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 12941 NR_046284 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 348-219 chr2 37061114 37061401 + 2 NA intron (NM_019024, intron 11 of 35) intron (NM_019024, intron 11 of 35) 23115 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 443-228 chr4 114991325 114991686 + 2 NA intron (NM_022569, intron 2 of 13) intron (NM_022569, intron 2 of 13) 122115 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 357-80 chr12 17726289 17726537 + 2 NA Intergenic Intergenic 53114 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 358-7 chr1 49288605 49288920 + 2 NA intron (NR_136623, intron 2 of 12) L1ME3|LINE|L1 31351 NR_125988 101929721 Hs.639985 NR_125988 ENSG00000230114 LOC101929721 - uncharacterized LOC101929721 ncRNA 316-308 chr2 226924295 226924561 + 2 NA intron (NM_001349069, intron 8 of 8) L1MA3|LINE|L1 88374 NM_032276 84236 Hs.471514 NM_032276 ENSG00000144468 RHBDD1 RHBDL4|RRP4 rhomboid domain containing 1 protein-coding 261-118 chr15 41521826 41522020 + 2 NA intron (NM_015540, intron 20 of 24) intron (NM_015540, intron 20 of 24) -8096 NM_001135685 4058 Hs.434481 NM_002344 ENSG00000062524 LTK TYK1 leukocyte receptor tyrosine kinase protein-coding 346-359 chr4 110328640 110328845 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -130127 NM_024090 79071 Hs.412939 NM_024090 ENSG00000170522 ELOVL6 FACE|FAE|LCE ELOVL fatty acid elongase 6 protein-coding 147-12 chr11 134352325 134352425 + 2 NA intron (NM_001370461, intron 5 of 18) L1MB3|LINE|L1 20387 NM_001370462 89944 Hs.436178 NM_138342 ENSG00000149328 GLB1L2 MST114|MSTP114 galactosidase beta 1 like 2 protein-coding 315-265 chr2 203599120 203599318 + 2 NA Intergenic Intergenic -63918 NM_203365 65059 Hs.471162 NM_025252 ENSG00000173166 RAPH1 ALS2CR18|ALS2CR9|LPD|PREL-2|PREL2|RMO1|RalGDS/AF-6 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 protein-coding 392-181 chr21 22342759 22343081 + 2 NA Intergenic Intergenic 244303 NR_038400 54143 Hs.352631 NR_038400 ENSG00000184856 LINC00308 C21orf74|NCRNA00308|PRED16 long intergenic non-protein coding RNA 308 ncRNA 305-221 chr18 68817824 68818092 + 2 NA intron (NM_024781, intron 1 of 7) intron (NM_024781, intron 1 of 7) 19878 NM_024781 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 287-388 chr7 122354064 122354346 + 2 NA intron (NM_001167940, intron 27 of 29) (TAA)n|Simple_repeat|Simple_repeat -49455 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 391-155 chr19 36711989 36712211 + 2 NA intron (NM_001363651, intron 1 of 4) AluSz|SINE|Alu 8419 NM_001363651 163081 Hs.412517 NM_152603 ENSG00000189042 ZNF567 - zinc finger protein 567 protein-coding 238-363 chr7 87944865 87945089 + 2 NA intron (NM_001324421, intron 2 of 28) (CTT)n|Simple_repeat|Simple_repeat 10726 NM_001324418 53616 Hs.256398 NM_004194 ENSG00000008277 ADAM22 ADAM 22|EIEE61|MDC2 ADAM metallopeptidase domain 22 protein-coding 345-308 chr20 39797264 39797562 + 2 NA Intergenic Intergenic -207048 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 230-186 chr2 162041266 162041454 + 2 NA intron (NM_001935, intron 5 of 25) L2c|LINE|L2 32855 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 156-56 chr2 150017644 150017737 + 2 NA Intergenic Intergenic -158499 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 397-179 chr2 204799002 204799347 + 2 NA intron (NM_205863, intron 2 of 21) L1MA3|LINE|L1 253699 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 287-95 chr11 84737046 84737301 + 2 NA intron (NM_001351274, intron 5 of 26) L1ME1|LINE|L1 -16231 NM_001351276 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 323-60 chr10 66225976 66226249 + 2 NA intron (NM_001127384, intron 13 of 17) L1MA5|LINE|L1 654687 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 348-32 chr1 203099682 203099937 + 2 NA Intergenic Intergenic -13797 NM_002479 4656 Hs.2830 NM_002479 ENSG00000122180 MYOG MYF4|bHLHc3|myf-4 myogenin protein-coding 443-17 chr1 114888382 114888719 + 2 NA intron (NM_001282542, intron 15 of 30) intron (NM_001282542, intron 15 of 30) 33687 NR_104211 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 338-79 chr10 107679340 107679659 + 2 NA Intergenic L1MC|LINE|L1 389794 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 227-63 chr11 58518728 58518887 + 2 NA Intergenic Intergenic -10702 NM_001005218 219968 Hs.553647 NM_001005218 ENSG00000198283 OR5B21 - olfactory receptor family 5 subfamily B member 21 protein-coding 131-78 chr8 120971033 120971137 + 2 NA Intergenic Intergenic -159039 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 222-151 chr18 67115386 67115538 + 2 NA Intergenic L1MA3|LINE|L1 33878 NR_049809 100847002 NR_049809 ENSG00000263354 MIR5011 - microRNA 5011 ncRNA 347-107 chr12 119614834 119615055 + 2 NA intron (NM_001136534, intron 1 of 2) (TCTCTCC)n|Simple_repeat|Simple_repeat 21170 NM_001136534 387890 Hs.530965 NM_001136534 ENSG00000224982 TMEM233 DSPB2|IFITMD2 transmembrane protein 233 protein-coding 343-262 chr2 118604592 118604763 + 2 NA Intergenic LTR35B|LTR|ERV1 -1711 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 563-73 chr18 6392790 6393336 + 2 NA intron (NM_001365765, intron 1 of 18) L1PB3|LINE|L1 -18638 NR_036205 100422840 NR_036205 ENSG00000283532 MIR4317 - microRNA 4317 ncRNA 389-313 chr6 40636864 40637201 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -49668 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 545-238 chr8 90060748 90061145 + 2 NA intron (NM_001366795, intron 8 of 9) MIRc|SINE|MIR 21933 NM_004929 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 277-321 chr5 55246413 55246665 + 2 NA Intergenic Intergenic -12822 NR_125347 10309 Hs.3041 NM_021147 ENSG00000152669 CCNO CCNU|CILD29|UDG2 cyclin O protein-coding 254-36 chr10 32380910 32381148 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger -2260 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 305-358 chr3 104532443 104532626 + 2 NA Intergenic L1PA13|LINE|L1 -834179 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 235-81 chr12 26306835 26306989 + 2 NA Intergenic L1MB1|LINE|L1 111339 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 263-33 chr1 234718436 234718631 + 2 NA Intergenic CR1-12_AMi|LINE|CR1 -5509 NR_038856 100506810 Hs.586634 NR_038856 ENSG00000227630 LINC01132 - long intergenic non-protein coding RNA 1132 ncRNA 131-16 chr11 83744327 83744427 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -61952 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 597-39 chr12 21119491 21119910 + 2 NA Intergenic L1P3|LINE|L1 -11494 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 245-232 chr3 95723775 95723995 + 2 NA Intergenic Intergenic -40692 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 243-84 chr11 115277459 115277649 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -56023 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 158-20 chr11 43743185 43743287 + 2 NA intron (NM_016142, intron 1 of 10) intron (NM_016142, intron 1 of 10) 62498 NM_016142 51144 Hs.132513 NM_016142 ENSG00000149084 HSD17B12 KAR|SDR12C1 hydroxysteroid 17-beta dehydrogenase 12 protein-coding 288-282 chr3 187290835 187291115 + 2 NA promoter-TSS (NR_135551) promoter-TSS (NR_135551) -297 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 180-36 chr12 23076974 23077080 + 2 NA Intergenic L1ME2|LINE|L1 -98609 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 266-52 chr10 107359711 107359877 + 2 NA Intergenic Intergenic -195088 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 225-146 chr2 19505150 19505368 + 2 NA Intergenic Intergenic -146636 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 247-195 chr2 68493477 68493678 + 2 NA intron (NM_173545, intron 2 of 9) L1M5|LINE|L1 25992 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 213-38 chr10 44154703 44154909 + 2 NA Intergenic Intergenic -137944 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 354-172 chr17 39900097 39900386 + 2 NA Intergenic L1ME3B|LINE|L1 17299 NM_018530 55876 Hs.306777 NM_018530 ENSG00000073605 GSDMB GSDML|PP4052|PRO2521 gasdermin B protein-coding 471-105 chr17 61514721 61515075 + 2 NA Intergenic Intergenic 58410 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 685-3 chr1 194449865 194450435 + 2 NA Intergenic Intergenic 1145405 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 341-542 chr8 131409554 131409859 + 2 NA Intergenic L1M5|LINE|L1 -368797 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 508-227 chr7 137461798 137462098 + 2 NA intron (NM_001321710, intron 27 of 32) intron (NM_001321710, intron 27 of 32) -118215 NM_001321387 5764 Hs.371249 NM_002825 ENSG00000105894 PTN HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 pleiotrophin protein-coding 256-245 chr22 49126523 49126764 + 2 NA Intergenic L1ME3D|LINE|L1 259873 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 209-269 chr6 18473465 18473627 + 2 NA Intergenic Intergenic -49201 NR_149116 105374956 Hs.561599 NR_149116 MIR548A1HG - MIR548A1 host gene ncRNA 528-70 chr12 115513065 115513528 + 2 NA Intergenic MER20|DNA|hAT-Charlie 635358 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 414-191 chr21 24973992 24974337 + 2 NA intron (NR_046198, intron 2 of 3) L1MB8|LINE|L1 133614 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 637-42 chr15 34690795 34691297 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -35282 NR_146869 105370762 Hs.569462 NR_146869 ENSG00000261304 LINC02252 - long intergenic non-protein coding RNA 2252 ncRNA 253-415 chr8 121721769 121722016 + 2 NA Intergenic Intergenic -80452 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 217-267 chr4 92736733 92736904 + 2 NA intron (NM_001286838, intron 2 of 14) intron (NM_001286838, intron 2 of 14) 432419 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 366-87 chr11 103635512 103635809 + 2 NA Intergenic Intergenic -214246 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 339-559 chr8 46153696 46153942 + 2 NA Intergenic ALR/Alpha|Satellite|centr 463824 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 274-399 chr8 123908477 123908718 + 2 NA intron (NM_001039112, intron 1 of 40) L2c|LINE|L2 56610 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 628-44 chr14 65546487 65546969 + 2 NA intron (NM_004480, intron 2 of 9) L1MD3|LINE|L1 75626 NR_030355 693210 NR_030355 ENSG00000207781 MIR625 MIRN625|hsa-mir-625 microRNA 625 ncRNA 544-29 chr10 52911149 52911641 + 2 NA Intergenic L1MB5|LINE|L1 -139695 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 358-108 chr13 68408391 68408719 + 2 NA Intergenic Intergenic 476770 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 234-79 chr12 99152003 99152132 + 2 NA intron (NM_152788, intron 15 of 25) intron (NM_152788, intron 15 of 25) 2699 NM_001352195 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 373-152 chr16 86640034 86640289 + 2 NA Intergenic Intergenic 61652 NM_005250 2300 Hs.533830 NM_005250 ENSG00000176678 FOXL1 FKH6|FKHL11|FREAC7 forkhead box L1 protein-coding 467-111 chr17 71482615 71482993 + 2 NA Intergenic L2b|LINE|L2 -280625 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 294-157 chr16 74161159 74161322 + 2 NA Intergenic L1MEj|LINE|L1 54281 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 569-161 chr7 3780551 3781028 + 2 NA intron (NM_152744, intron 4 of 44) L1MA7|LINE|L1 -348896 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 248-394 chr8 26298321 26298499 + 2 NA intron (NM_001177591, intron 2 of 9) HAL1|LINE|L1 5194 NM_001177591 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 310-162 chr15 101532340 101532521 + 2 NA Intergenic L1MB3|LINE|L1 -42446 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 354-255 chr20 8509871 8510138 + 2 NA intron (NM_182734, intron 3 of 32) intron (NM_182734, intron 3 of 32) 261300 NR_046809 100874337 Hs.662218 NR_046809 ENSG00000225479 PLCB1-IT1 - PLCB1 intronic transcript 1 ncRNA 242-262 chr4 62821037 62821228 + 2 NA Intergenic Intergenic -659367 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 244-213 chr22 47172358 47172495 + 2 NA intron (NM_001284305, intron 12 of 12) intron (NM_001284305, intron 12 of 12) -173145 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 534-275 chr9 72321769 72322143 + 2 NA intron (NR_110952, intron 2 of 4) intron (NR_110952, intron 2 of 4) 16520 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 443-227 chr4 114790292 114790594 + 2 NA Intergenic Intergenic 133684 NR_030303 693162 NR_030303 ENSG00000207931 MIR577 MIRN577|hsa-mir-577|mir-577 microRNA 577 ncRNA 485-51 chr12 10793664 10794019 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 8786 NM_023919 50837 Hs.533754 NM_023919 ENSG00000121377 TAS2R7 T2R7|TRB4 taste 2 receptor member 7 protein-coding 277-64 chr10 107456109 107456290 + 2 NA Intergenic Intergenic -291493 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 152-21 chr12 95065117 95065209 + 2 NA intron (NM_001127362, intron 2 of 11) Charlie1|DNA|hAT-Charlie 8455 NM_001032287 7181 Hs.108301 NM_003297 ENSG00000120798 NR2C1 TR2 nuclear receptor subfamily 2 group C member 1 protein-coding 271-229 chr20 33231524 33231760 + 2 NA Intergenic AluJb|SINE|Alu -4354 NM_016583 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 584-61 chr18 45004409 45004837 + 2 NA intron (NM_015559, intron 4 of 5) intron (NM_015559, intron 4 of 5) -34457 NR_036203 100422829 NR_036203 ENSG00000265957 MIR4319 - microRNA 4319 ncRNA 670-73 chr21 35435433 35436019 + 2 NA intron (NR_073512, intron 2 of 2) intron (NR_073512, intron 2 of 2) 145038 NR_073512 100506403 Hs.536609 NR_073512 ENSG00000159216 LOC100506403 - uncharacterized LOC100506403 ncRNA 525-259 chr8 89865861 89866160 + 2 NA Intergenic L1ME4c|LINE|L1 -35858 NM_004337 734 Hs.436445 NM_004337 ENSG00000164823 OSGIN2 C8orf1|hT41 oxidative stress induced growth inhibitor family member 2 protein-coding 607-105 chr4 14245289 14245823 + 2 NA Intergenic MLT1E3|LTR|ERVL-MaLR 133588 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 250-124 chr14 59572988 59573180 + 2 NA intron (NM_001164399, intron 2 of 19) intron (NM_001164399, intron 2 of 19) 3728 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 234-55 chr11 28339517 28339744 + 2 NA Intergenic L1MEg|LINE|L1 137918 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 536-78 chr14 88313627 88314125 + 2 NA intron (NM_021161, intron 1 of 6) MER103C|DNA|hAT-Charlie 9393 NM_138317 54207 Hs.560255 NM_021161 ENSG00000100433 KCNK10 K2p10.1|PPP1R97|TREK-2|TREK2 potassium two pore domain channel subfamily K member 10 protein-coding 173-125 chr7 8533344 8533443 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 99784 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 291-479 chr8 138786282 138786474 + 2 NA intron (NM_152888, intron 12 of 64) intron (NM_152888, intron 12 of 64) 127663 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 373-300 chr4 159963901 159964212 + 2 NA Intergenic L1MA5|LINE|L1 -186272 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 416-144 chr17 65432413 65432641 + 2 NA Intergenic L2b|LINE|L2 -25014 NR_131984 105827617 NR_131984 ENSG00000263520 LINC02563 CRAT40 long intergenic non-protein coding RNA 2563 ncRNA 271-413 chr7 92315412 92315573 + 2 NA intron (NM_019004, intron 3 of 19) L2|LINE|L2 -69392 NM_001350672 889 Hs.531987 NM_004912 ENSG00000001631 KRIT1 CAM|CCM1 KRIT1 ankyrin repeat containing protein-coding 415-187 chr3 112203958 112204279 + 2 NA intron (NR_135297, intron 11 of 22) intron (NR_135297, intron 11 of 22) 70695 NR_157393 112806053 NR_157393 TBILA - TGF-beta induced lncRNA ncRNA 230-200 chr20 120427 120559 + 2 NA Intergenic HAL1ME|LINE|L1 -22097 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 284-416 chr8 124203597 124203771 + 2 NA intron (NR_125420, intron 2 of 2) intron (NR_125420, intron 2 of 2) -32162 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 202-162 chr3 59798293 59798486 + 2 NA intron (NM_001354590, intron 7 of 8) intron (NM_001354590, intron 7 of 8) -139892 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 260-294 chr3 175133796 175134018 + 2 NA intron (NM_207015, intron 2 of 13) intron (NM_207015, intron 2 of 13) -18665 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 322-413 chr5 16362660 16362937 + 2 NA Intergenic LOR1-int|LTR|ERV1 78304 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 237-292 chr5 37437304 37437515 + 2 NA intron (NM_001345998, intron 5 of 17) intron (NM_001345998, intron 5 of 17) 58091 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 346-224 chr2 6570967 6571281 + 2 NA Intergenic L2a|LINE|L2 62663 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 387-255 chr4 103806665 103806912 + 2 NA Intergenic L1MB8|LINE|L1 -86803 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 502-198 chr4 43290439 43290815 + 2 NA Intergenic Intergenic 201916 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 537-45 chr11 91889444 91889813 + 2 NA Intergenic Intergenic -335406 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 174-67 chr2 164403963 164404076 + 2 NA Intergenic MLT1H1-int|LTR|ERVL-MaLR 164476 NM_001303422 2888 Hs.411881 NM_004490 ENSG00000115290 GRB14 - growth factor receptor bound protein 14 protein-coding 318-352 chr3 44738620 44738806 + 2 NA Intergenic L1ME2|LINE|L1 9078 NM_001258280 115560 Hs.401045 NM_145044 ENSG00000186446 ZNF501 ZNF|ZNF52 zinc finger protein 501 protein-coding 329-212 chr17 11494389 11494565 + 2 NA intron (NM_001173462, intron 3 of 4) intron (NM_001173462, intron 3 of 4) -103993 NM_001372 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 245-239 chr3 157721710 157721924 + 2 NA Intergenic L1PA16|LINE|L1 178473 NM_001130001 152078 Hs.259046 NM_001099777 ENSG00000174899 SLC66A1L C3orf55|PQLC2L|SLC66A2L solute carrier family 66 member 1 like protein-coding 666-98 chr5 136261313 136261760 + 2 NA intron (NM_020389, intron 5 of 11) intron (NM_020389, intron 5 of 11) 34881 NR_133682 106478968 Hs.637713 NR_133682 ENSG00000250947 TRPC7-AS2 CTB-28J9.2 TRPC7 antisense RNA 2 ncRNA 234-34 chr10 41758337 41758541 + 2 NA Intergenic ALR/Alpha|Satellite|centr 609606 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 335-579 chrX 42823675 42823984 + 2 NA Intergenic Intergenic -45666 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 347-125 chr14 47116956 47117256 + 2 NA intron (NM_001113498, intron 5 of 16) L1MB1|LINE|L1 226140 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 368-156 chr14 86993131 86993494 + 2 NA Intergenic Intergenic 87534 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 271-359 chr5 142992054 142992223 + 2 NA intron (NR_146198, intron 11 of 22) L1M5|LINE|L1 -123228 NR_046680 100874239 Hs.570896 NR_046680 ENSG00000226272 ARHGAP26-AS1 - ARHGAP26 antisense RNA 1 ncRNA 327-502 chr8 131029325 131029621 + 2 NA intron (NM_001115, intron 1 of 17) intron (NM_001115, intron 1 of 17) 11436 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 348-210 chr19 37164385 37164580 + 2 NA TTS (NR_110152) TTS (NR_110152) 7954 NM_199126 199704 Hs.659236 NM_152655 ENSG00000196967 ZNF585A - zinc finger protein 585A protein-coding 183-126 chr5 166181546 166181671 + 2 NA Intergenic L1M5|LINE|L1 744762 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 358-413 chr6 115030810 115031005 + 2 NA Intergenic Intergenic 612928 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 138-46 chr20 3540842 3540966 + 2 NA intron (NM_001207047, intron 3 of 24) intron (NM_001207047, intron 3 of 24) 69886 NM_139321 8455 Hs.276252 NM_012070 ENSG00000088812 ATRN DPPT-L|MGCA attractin protein-coding 1206-5 chr2 22664197 22665089 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 128164 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 385-420 chrX 96833356 96833625 + 2 NA intron (NM_007309, intron 4 of 26) intron (NM_007309, intron 4 of 26) -50418 NM_013347 29935 Hs.659349 NM_013347 ENSG00000204086 RPA4 HSU24186 replication protein A4 protein-coding 562-6 chr1 94370728 94371148 + 2 NA Intergenic L1MD|LINE|L1 -47439 NM_001122674 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 359-410 chr5 144713221 144713409 + 2 NA Intergenic L1PA2|LINE|L1 507924 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 132-15 chr11 40961542 40961623 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 498054 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 246-374 chr7 68331144 68331382 + 2 NA Intergenic Intergenic 311010 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 486-227 chr4 86212665 86212991 + 2 NA intron (NM_001363657, intron 2 of 13) L1MB1|LINE|L1 93022 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 272-121 chr14 79914171 79914353 + 2 NA Intergenic L3|LINE|CR1 -297157 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 291-325 chr4 96602055 96602304 + 2 NA intron (NR_147149, intron 3 of 3) intron (NR_147149, intron 3 of 3) 291476 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 286-216 chr2 124714567 124714824 + 2 NA intron (NM_130773, intron 13 of 23) (AT)n|Simple_repeat|Simple_repeat 689408 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 687-11 chr10 12879713 12880274 + 2 NA Intergenic Intergenic 121720 NM_031455 83643 Hs.498720 NM_031455 ENSG00000151468 CCDC3 - coiled-coil domain containing 3 protein-coding 266-268 chr3 175811078 175811302 + 2 NA TTS (NM_207015) TTS (NM_207015) -34857 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 446-236 chr5 43814125 43814464 + 2 NA Intergenic L1PA5|LINE|L1 -211064 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 242-276 chr4 100336123 100336313 + 2 NA Intergenic L1PA14|LINE|L1 59029 NR_135619 107399301 NR_135619 SNORA101A - small nucleolar RNA, H/ACA box 101A snoRNA 227-204 chr20 39228302 39228447 + 2 NA Intergenic MIRb|SINE|MIR -3626 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 281-151 chr16 65738511 65738735 + 2 NA Intergenic Intergenic -162323 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 304-477 chr7 3717739 3717991 + 2 NA intron (NM_152744, intron 4 of 44) L1MD2|LINE|L1 -411820 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 313-412 chr4 172737193 172737381 + 2 NA intron (NM_001034845, intron 5 of 12) L1MA4|LINE|L1 -10409 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 454-320 chr8 119344799 119345230 + 2 NA Intergenic Intergenic 19843 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 703-58 chr3 78402939 78403360 + 2 NA Intergenic Intergenic -354186 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 165-104 chr5 156463962 156464092 + 2 NA intron (NM_001128209, intron 2 of 7) MIR|SINE|MIR 136863 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 664-36 chr12 83309357 83309935 + 2 NA Intergenic Intergenic 622491 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 327-11 chr1 95005559 95005859 + 2 NA intron (NM_144988, intron 3 of 3) intron (NM_144988, intron 3 of 3) -55887 NR_132786 101928098 Hs.730090 NR_132786 ENSG00000230427 LOC101928098 - uncharacterized LOC101928098 ncRNA 604-148 chr7 9304473 9305004 + 2 NA Intergenic Intergenic -329532 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 162-94 chr4 52858117 52858245 + 2 NA Intergenic LTR67B|LTR|ERVL -4136 NM_023940 65997 Hs.8035 NM_023940 ENSG00000128045 RASL11B - RAS like family 11 member B protein-coding 336-370 chr3 87459677 87459974 + 2 NA Intergenic Intergenic -183241 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 343-369 chr3 182902227 182902563 + 2 NA intron (NM_014616, intron 28 of 29) intron (NM_014616, intron 28 of 29) 78143 NM_020640 54165 Hs.592789 NM_020640 ENSG00000043093 DCUN1D1 DCNL1|DCUN1L1|RP42|SCCRO|SCRO|Tes3 defective in cullin neddylation 1 domain containing 1 protein-coding 358-22 chr1 209213246 209213428 + 2 NA Intergenic L1MA4A|LINE|L1 -112119 NR_135085 105372897 Hs.116154 NR_135085 ENSG00000227940 LINC01696 - long intergenic non-protein coding RNA 1696 ncRNA 352-577 chrX 97831003 97831259 + 2 NA Intergenic L1MC4a|LINE|L1 -266596 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 288-67 chr11 37344312 37344474 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -594208 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 502-191 chr4 16377087 16377553 + 2 NA Intergenic Intergenic 150657 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 165-41 chr18 4206099 4206229 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -58438 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 533-37 chr12 76894616 76895012 + 2 NA Intergenic AluSg|SINE|Alu -15795 NM_001300965 1466 Hs.530904 NM_001321 ENSG00000175183 CSRP2 CRP2|LMO5|SmLIM cysteine and glycine rich protein 2 protein-coding 225-88 chr14 54247437 54247624 + 2 NA Intergenic Intergenic -149338 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 516-43 chr12 1994713 1995113 + 2 NA intron (NM_001319292, intron 2 of 2) intron (NM_001319292, intron 2 of 2) 9544 NM_152640 196513 Hs.130934 NM_152640 ENSG00000151065 DCP1B DCP1 decapping mRNA 1B protein-coding 457-160 chr3 105022741 105023155 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR -343765 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 476-145 chr2 114942544 114942934 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) -109191 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 187-177 chr8 120669703 120669883 + 2 NA intron (NM_021021, intron 2 of 6) MER5A1|DNA|hAT-Charlie -91460 NR_125419 101927543 Hs.371902 NR_125419 ENSG00000248318 LOC101927543 - uncharacterized LOC101927543 ncRNA 222-119 chr15 66480636 66480818 + 2 NA intron (NM_002755, intron 5 of 10) intron (NM_002755, intron 5 of 10) 16307 NR_039737 100616149 NR_039737 ENSG00000266589 MIR4512 - microRNA 4512 ncRNA 266-140 chr16 61438079 61438334 + 2 NA Intergenic Intergenic -382440 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 233-146 chr19 7082579 7082748 + 2 NA intron (NM_024341, intron 7 of 7) intron (NM_024341, intron 7 of 7) 12960 NM_001044388 79230 Hs.591380 NM_024341 ENSG00000130544 ZNF557 - zinc finger protein 557 protein-coding 340-254 chr2 68495503 68495676 + 2 NA intron (NM_173545, intron 2 of 9) MSTA-int|LTR|ERVL-MaLR 28004 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 411-7 chr1 79866428 79866748 + 2 NA Intergenic Intergenic -669167 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 325-406 chr4 107162343 107162622 + 2 NA Intergenic L1MCa|LINE|L1 -126169 NM_014421 27123 Hs.211869 NM_014421 ENSG00000155011 DKK2 DKK-2 dickkopf WNT signaling pathway inhibitor 2 protein-coding 254-385 chr7 67398561 67398718 + 2 NA Intergenic AluJo|SINE|Alu 62663 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 256-223 chr2 167377149 167377368 + 2 NA Intergenic L1PA16|LINE|L1 189886 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 467-255 chr7 3070127 3070522 + 2 NA Intergenic AluJb|SINE|Alu -26457 NM_001324281 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 305-452 chr5 140738156 140738335 + 2 NA Intergenic Intergenic 12086 NR_026705 56662 NR_026705 ENSG00000202515 VTRNA1-3 HVG3|VAULTRC3|VR3|hvg-3 vault RNA 1-3 ncRNA 369-375 chr7 1701831 1702068 + 2 NA intron (NM_001128636, intron 1 of 2) L1ME3B|LINE|L1 13830 NM_001128636 392617 Hs.42896 NM_001128636 ENSG00000225968 ELFN1 PPP1R28 extracellular leucine rich repeat and fibronectin type III domain containing 1 protein-coding 393-335 chr7 89752548 89752785 + 2 NA Intergenic Intergenic -366734 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 220-42 chr10 33089913 33090087 + 2 NA intron (NR_160030, intron 1 of 2) THE1C|LTR|ERVL-MaLR 26807 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 216-125 chr16 51562025 51562209 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -200402 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 192-68 chr14 72769848 72769999 + 2 NA intron (NM_001280544, intron 2 of 9) L1MC5|LINE|L1 122726 NM_001280544 8110 Hs.162868 NM_012074 ENSG00000205683 DPF3 BAF45C|CERD4 double PHD fingers 3 protein-coding 164-5 chr1 162418139 162418287 + 2 NA Intergenic Intergenic -6077 NM_053282 117157 Hs.350581 NM_053282 ENSG00000198574 SH2D1B EAT2 SH2 domain containing 1B protein-coding 523-75 chr14 29497299 29497797 + 2 NA Intergenic L1ME3B|LINE|L1 429548 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 391-222 chr22 49592820 49593182 + 2 NA intron (NR_110523, intron 1 of 4) MLT2B1|LTR|ERVL -49535 NR_037440 100500882 NR_037440 ENSG00000264139 MIR3667 - microRNA 3667 ncRNA 249-202 chr2 84056024 84056233 + 2 NA Intergenic Intergenic -234554 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 499-269 chr8 110549965 110550326 + 2 NA Intergenic Intergenic 477288 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 350-466 chr7 8142093 8142312 + 2 NA intron (NM_001350826, intron 9 of 14) intron (NM_001350826, intron 9 of 14) 119850 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 775-71 chr5 150666649 150667083 + 2 NA intron (NM_001122853, intron 2 of 6) AluSz6|SINE|Alu 5615 NM_001122853 91977 Hs.91626 NM_133371 ENSG00000164591 MYOZ3 CS-3|CS3|FATZ-3|FRP3 myozenin 3 protein-coding 622-150 chr8 144907902 144908287 + 2 NA Intergenic AluJb|SINE|Alu -5917 NM_001363099 58500 Hs.532277 NM_021061 ENSG00000196150 ZNF250 ZFP647|ZNF647 zinc finger protein 250 protein-coding 271-48 chr10 62561207 62561410 + 2 NA intron (NM_199452, intron 1 of 6) intron (NM_199452, intron 1 of 6) 40860 NM_199452 22891 Hs.22653 NM_014951 ENSG00000138311 ZNF365 Su48|UAN|ZNF365D zinc finger protein 365 protein-coding 346-20 chr1 117274824 117275109 + 2 NA Intergenic Intergenic -20500 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 224-295 chr7 18789929 18790092 + 2 NA intron (NM_058176, intron 15 of 22) intron (NM_058176, intron 15 of 22) 280740 NM_001204147 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 469-124 chr2 34029812 34030088 + 2 NA intron (NR_126403, intron 4 of 5) intron (NR_126403, intron 4 of 5) -37276 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 428-237 chr5 87999789 88000101 + 2 NA Intergenic Intergenic 268900 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 454-301 chr7 125346475 125346818 + 2 NA intron (NR_110188, intron 6 of 8) intron (NR_110188, intron 6 of 8) -82355 NR_110183 101928254 Hs.571236 NR_110182 ENSG00000219445 LOC101928254 - uncharacterized LOC101928254 ncRNA 209-241 chr4 166871108 166871272 + 2 NA intron (NM_001040159, intron 6 of 10) L1MCb|LINE|L1 363236 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 340-382 chr3 180666205 180666485 + 2 NA intron (NM_181426, intron 1 of 19) intron (NM_181426, intron 1 of 19) 13144 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 310-282 chr2 238737777 238737994 + 2 NA Intergenic L1MCa|LINE|L1 110022 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 189-133 chr3 143868407 143868532 + 2 NA Intergenic Intergenic -20001 NM_173653 285195 Hs.302257 NM_173653 ENSG00000181804 SLC9A9 AUTS16|NHE9 solute carrier family 9 member A9 protein-coding 563-146 chr5 7082213 7082725 + 2 NA Intergenic Intergenic 186885 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 276-462 chr8 123897119 123897363 + 2 NA intron (NM_001039112, intron 1 of 40) L2|LINE|L2 45254 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 143-26 chr14 42875056 42875179 + 2 NA Intergenic Intergenic 1268261 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 542-97 chr2 69050460 69050890 + 2 NA intron (NM_032208, intron 3 of 17) L1M6|LINE|L1 37531 NM_018153 84168 Hs.165859 NM_018153 ENSG00000169604 ANTXR1 ATR|GAPO|TEM8 ANTXR cell adhesion molecule 1 protein-coding 230-104 chr14 25881094 25881239 + 2 NA Intergenic L2b|LINE|L2 672264 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 344-259 chr2 186810338 186810524 + 2 NA Intergenic Intergenic 38739 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 252-371 chr6 62444594 62444826 + 2 NA Intergenic L1PA13|LINE|L1 -158483 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 263-428 chr8 128407204 128407444 + 2 NA intron (NR_121672, intron 6 of 7) intron (NR_121672, intron 6 of 7) 157355 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 297-373 chr5 67896326 67896572 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 103236 NR_130779 101928858 Hs.334066 NR_130779 ENSG00000249364 LOC101928858 - uncharacterized LOC101928858 ncRNA 366-419 chr7 104105180 104105529 + 2 NA Intergenic L3|LINE|CR1 102659 NM_002553 5001 Hs.432948 NM_002553 ENSG00000164815 ORC5 ORC5L|ORC5P|ORC5T|PPP1R117 origin recognition complex subunit 5 protein-coding 261-356 chr7 64558973 64559167 + 2 NA intron (NM_001130022, intron 1 of 3) MER4CL34|LTR|ERV1 4001 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 295-499 chr9 86874804 86875046 + 2 NA Intergenic Intergenic 72581 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 350-386 chr5 18890436 18890648 + 2 NA Intergenic L1PA8A|LINE|L1 995730 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 272-375 chr6 37291975 37292184 + 2 NA intron (NR_130108, intron 8 of 12) intron (NR_130108, intron 8 of 12) -33924 NR_104443 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 269-439 chrX 76168856 76169052 + 2 NA Intergenic AluSc|SINE|Alu -3975 NM_001300888 51260 Hs.370100 NM_016500 ENSG00000102390 PBDC1 CXorf26 polysaccharide biosynthesis domain containing 1 protein-coding 169-97 chr5 54052299 54052446 + 2 NA intron (NM_019087, intron 4 of 4) L1MC3|LINE|L1 -100773 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 239-216 chr21 14895947 14896148 + 2 NA intron (NR_146322, intron 1 of 3) intron (NR_146322, intron 1 of 3) 22621 NR_146322 107987295 NR_146322 LINC02246 - long intergenic non-protein coding RNA 2246 ncRNA 355-301 chr22 28093211 28093455 + 2 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -172721 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 221-53 chr11 71383324 71383481 + 2 NA Intergenic Intergenic 39952 NR_038862 399923 Hs.128191 NM_001001680 ENSG00000172900 FLJ42102 - uncharacterized LOC399923 ncRNA 407-59 chr12 14151653 14152015 + 2 NA Intergenic Intergenic -171478 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 190-119 chr3 51064212 51064361 + 2 NA intron (NM_004947, intron 5 of 52) intron (NM_004947, intron 5 of 52) -321005 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 580-65 chr17 54622780 54623096 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -277753 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 416-60 chr10 120972665 120973076 + 2 NA Intergenic L1MB8|LINE|L1 121508 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 258-360 chr7 15020940 15021182 + 2 NA Intergenic AluJr|SINE|Alu -46203 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 279-323 chr5 44593649 44593874 + 2 NA Intergenic Intergenic -83479 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 570-87 chr16 79410502 79410917 + 2 NA Intergenic L2b|LINE|L2 190028 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 314-11 chr1 59231759 59232057 + 2 NA Intergenic AluJr4|SINE|Alu -64905 NM_001350798 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 277-208 chr2 140802999 140803252 + 2 NA intron (NM_018557, intron 32 of 90) intron (NM_018557, intron 32 of 90) -216440 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 387-284 chr5 67159157 67159366 + 2 NA intron (NM_001297651, intron 23 of 25) L1ME4a|LINE|L1 37538 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 292-333 chr5 3562664 3562871 + 2 NA Intergenic L1MA4A|LINE|L1 -26673 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 334-408 chr5 11159190 11159467 + 2 NA intron (NM_001288715, intron 11 of 20) intron (NM_001288715, intron 11 of 20) -398094 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 454-78 chr12 121677252 121677547 + 2 NA Intergenic LTR16A2|LTR|ERVL -4755 NM_001363685 283385 Hs.434154 NM_173855 ENSG00000139714 MORN3 - MORN repeat containing 3 protein-coding 243-282 chr3 77237626 77237770 + 2 NA intron (NM_001290039, intron 2 of 26) L1MC1|LINE|L1 139686 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 619-25 chr10 129273268 129273737 + 2 NA Intergenic Intergenic -193739 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 351-173 chr17 58853142 58853417 + 2 NA intron (NM_014906, intron 1 of 6) L1MB3|LINE|L1 97410 NR_048561 22843 Hs.245044 NM_014906 ENSG00000175175 PPM1E CaMKP-N|POPX1|PP2CH|caMKN protein phosphatase, Mg2+/Mn2+ dependent 1E protein-coding 231-387 chrX 96047510 96047691 + 2 NA Intergenic L1M5|LINE|L1 290302 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 208-218 chr5 144358476 144358629 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 153161 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 343-558 chr8 127710722 127711039 + 2 NA intron (NR_117102, intron 2 of 3) intron (NR_117102, intron 2 of 3) 23087 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 169-36 chr14 47430878 47431007 + 2 NA intron (NM_001113498, intron 1 of 16) MIR|SINE|MIR -87696 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 262-223 chr2 134032886 134033062 + 2 NA Intergenic Intergenic -86961 NM_001371457 336-100 chr11 79873445 79873661 + 2 NA Intergenic MER21C|LTR|ERVL -432523 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 275-261 chr4 45105125 45105288 + 2 NA Intergenic Intergenic -378572 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 162-60 chr2 154494641 154494729 + 2 NA Intergenic MER67D|LTR|ERV1 -37247 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 326-301 chr20 54547975 54548199 + 2 NA intron (NM_018431, intron 1 of 7) MER20|DNA|hAT-Charlie 72494 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 309-225 chr19 27685059 27685285 + 2 NA Intergenic ALR/Alpha|Satellite|centr -108259 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 395-226 chr3 109336134 109336387 + 2 NA intron (NM_001348929, intron 1 of 5) intron (NM_001348929, intron 1 of 5) 1257 NM_001348928 55211 Hs.317659 NM_018189 ENSG00000121570 DPPA4 2410091M23Rik developmental pluripotency associated 4 protein-coding 331-301 chr2 199652143 199652448 + 2 NA intron (NR_110270, intron 6 of 6) L1MA9|LINE|L1 44227 NR_110270 101927641 Hs.549598 NR_110270 ENSG00000238217 LINC01877 - long intergenic non-protein coding RNA 1877 ncRNA 517-108 chr18 43983421 43983783 + 2 NA Intergenic L1MC2|LINE|L1 548095 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 338-354 chr3 140731148 140731447 + 2 NA Intergenic Intergenic 53233 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 343-567 chr8 138324291 138324575 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 172828 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 398-12 chr1 107188179 107188483 + 2 NA intron (NM_001113226, intron 1 of 6) UCON28a|Unknown|Unknown 40262 NM_001113228 22854 Hs.133046 NM_014917 ENSG00000162631 NTNG1 Lmnt1 netrin G1 protein-coding 300-51 chr10 84879876 84880149 + 2 NA Intergenic L1M6|LINE|L1 318893 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 326-277 chr2 183391072 183391315 + 2 NA Intergenic L1MEg|LINE|L1 266750 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 457-175 chr4 53415730 53416103 + 2 NA intron (NM_001134937, intron 10 of 17) intron (NM_001134937, intron 10 of 17) 38263 NM_001134938 81608 Hs.555109 NM_030917 ENSG00000145216 FIP1L1 FIP1|Rhe|hFip1 factor interacting with PAPOLA and CPSF1 protein-coding 361-339 chr4 168347506 168347825 + 2 NA Intergenic L1PA14|LINE|L1 -28913 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 300-415 chr7 9492126 9492383 + 2 NA Intergenic L1PA15|LINE|L1 -142016 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 338-122 chr12 21547409 21547714 + 2 NA intron (NM_021957, intron 11 of 15) L1MC1|LINE|L1 19636 NR_135188 80763 Hs.130692 NM_030572 ENSG00000134548 SPX C12orf39 spexin hormone protein-coding 238-43 chr10 62899261 62899413 + 2 NA Intergenic Intergenic -80170 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 473-306 chrX 43584085 43584551 + 2 NA Intergenic Charlie24|DNA|hAT-Charlie -70589 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 308-372 chr5 10917928 10918096 + 2 NA Intergenic Intergenic -156778 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 421-270 chr6 166062369 166062757 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -35157 NR_147704 729681 Hs.520550 NR_147704 LOC729681 - uncharacterized LOC729681 ncRNA 262-200 chr2 50868436 50868615 + 2 NA intron (NM_001330093, intron 4 of 22) L1PB4|LINE|L1 163607 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 336-323 chr20 42324226 42324537 + 2 NA intron (NM_133170, intron 11 of 31) L1MB7|LINE|L1 -361102 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 370-460 chr8 136805546 136805864 + 2 NA intron (NR_147196, intron 4 of 5) MER4B|LTR|ERV1 274907 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 588-150 chr7 102820297 102820742 + 2 NA intron (NR_105043, intron 20 of 20) intron (NR_105043, intron 20 of 20) 71520 NR_146979 222234 Hs.202543 NM_147194 ENSG00000222011 FAM185A - family with sequence similarity 185 member A protein-coding 258-106 chr13 71351706 71351923 + 2 NA Intergenic L1ME3A|LINE|L1 336673 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 691-32 chr16 62485108 62485678 + 2 NA Intergenic Intergenic -448955 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 299-398 chr6 84814599 84814892 + 2 NA Intergenic Intergenic -50147 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 329-305 chr2 200264817 200265012 + 2 NA Intergenic Intergenic -40965 NM_015535 26010 Hs.120323 NM_015535 ENSG00000196141 SPATS2L DNAPTP6|SGNP spermatogenesis associated serine rich 2 like protein-coding 260-317 chr4 91707866 91708084 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 569327 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 389-17 chr1 118357871 118358188 + 2 NA Intergenic L1ME2|LINE|L1 -172801 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 457-191 chr4 165865014 165865402 + 2 NA Intergenic Intergenic -8029 NM_001204760 7092 Hs.106513 NM_012464 ENSG00000038295 TLL1 ASD6|TLL tolloid like 1 protein-coding 252-30 chr10 15385116 15385320 + 2 NA Intergenic Intergenic -13929 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 348-214 chr2 7958544 7958779 + 2 NA intron (NR_015405, intron 2 of 2) intron (NR_015405, intron 2 of 2) 18153 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 409-262 chr6 67571840 67572185 + 2 NA Intergenic L1ME2|LINE|L1 -483339 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 253-323 chr5 32032735 32032920 + 2 NA intron (NM_178140, intron 6 of 24) MIRb|SINE|MIR -96668 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 625-15 chr10 106924487 106924929 + 2 NA intron (NM_001206569, intron 2 of 25) intron (NM_001206569, intron 2 of 25) 239998 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 343-21 chr1 100299079 100299379 + 2 NA Intergenic Tigger5b|DNA|TcMar-Tigger 17988 NR_030279 693138 NR_030279 ENSG00000207750 MIR553 MIRN553|hsa-mir-553 microRNA 553 ncRNA 233-337 chr6 73827714 73827932 + 2 NA 3' UTR (NM_133493, exon 33 of 33) 3' UTR (NM_133493, exon 33 of 33) 131620 NM_133493 135228 Hs.399891 NM_133493 ENSG00000156535 CD109 CPAMD7|p180|r150 CD109 molecule protein-coding 345-369 chr3 179854443 179854633 + 2 NA intron (NM_001349408, intron 8 of 14) intron (NM_001349408, intron 8 of 14) -43656 NR_110059 101928790 Hs.667247 NR_110059 ENSG00000244302 PEX5L-AS2 - PEX5L antisense RNA 2 ncRNA 451-170 chr5 8312834 8313162 + 2 NA Intergenic L1M1|LINE|L1 144566 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 361-47 chr10 75398091 75398290 + 2 NA 3' UTR (NM_032772, exon 2 of 2) 3' UTR (NM_032772, exon 2 of 2) -3338 NR_024421 100131213 Hs.534598 NR_024421 ENSG00000237149 ZNF503-AS2 C10orf41|NCRNA00245 ZNF503 antisense RNA 2 ncRNA 237-269 chr4 90852501 90852679 + 2 NA intron (NM_001145065, intron 8 of 10) LTR41|LTR|ERVL 617559 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 188-198 chr7 133849539 133849694 + 2 NA intron (NM_021807, intron 11 of 17) MER63D|DNA|hAT-Blackjack -24728 NR_120513 101928861 Hs.675747 NR_120513 LOC101928861 - uncharacterized LOC101928861 ncRNA 498-38 chr10 92920476 92920851 + 2 NA intron (NM_001319195, intron 8 of 21) L1M4|LINE|L1 72143 NM_001319195 54536 Hs.655657 NM_019053 ENSG00000138190 EXOC6 EXOC6A|SEC15|SEC15L|SEC15L1|SEC15L3|Sec15p exocyst complex component 6 protein-coding 530-69 chr14 43303934 43304272 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 1203180 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 265-12 chr1 89278048 89278258 + 2 NA Intergenic LTR16E2|LTR|ERVL -5293 NM_052942 115362 Hs.513726 NM_052942 ENSG00000154451 GBP5 GBP-5 guanylate binding protein 5 protein-coding 396-223 chr3 99407289 99407544 + 2 NA Intergenic Intergenic -231178 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 181-102 chr4 45058911 45059054 + 2 NA Intergenic L1ME2z|LINE|L1 -332348 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 197-98 chr2 99743073 99743224 + 2 NA intron (NM_001025108, intron 9 of 23) intron (NM_001025108, intron 9 of 23) -253131 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 245-328 chr7 64049341 64049495 + 2 NA intron (NM_001159522, intron 1 of 3) MER101-int|LTR|ERV1 3984 NM_001159522 442319 Hs.640774 NM_001159522 ENSG00000214652 ZNF727 ZNF727P zinc finger protein 727 protein-coding 319-38 chr1 232762126 232762432 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -19564 NR_110683 101927683 Hs.520568 NR_110683 ENSG00000236497 LINC01744 - long intergenic non-protein coding RNA 1744 ncRNA 348-356 chr4 58412317 58412619 + 2 NA Intergenic Intergenic 123860 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 359-415 chr5 179251827 179252172 + 2 NA intron (NM_014244, intron 3 of 21) AluJb|SINE|Alu 93462 NM_014244 9509 Hs.23871 NM_014244 ENSG00000087116 ADAMTS2 ADAM-TS2|ADAMTS-2|ADAMTS-3|EDSDERMS|NPI|PC I-NP|PCI-NP|PCINP|PCPNI|PNPI ADAM metallopeptidase with thrombospondin type 1 motif 2 protein-coding 377-88 chr12 38088164 38088404 + 2 NA Intergenic Intergenic -228490 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 366-303 chr4 42887716 42887998 + 2 NA Intergenic Intergenic -5409 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 299-97 chr12 16163793 16163978 + 2 NA Intergenic Intergenic 113800 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 319-321 chr3 12172833 12173006 + 2 NA intron (NM_133625, intron 10 of 12) intron (NM_133625, intron 10 of 12) -14007 NM_003256 7079 Hs.591665 NM_003256 ENSG00000157150 TIMP4 TIMP-4 TIMP metallopeptidase inhibitor 4 protein-coding 367-223 chr2 143761065 143761282 + 2 NA intron (NM_018460, intron 13 of 13) intron (NM_018460, intron 13 of 13) -175894 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 695-92 chr6 38136091 38136667 + 2 NA intron (NM_021943, intron 5 of 5) intron (NM_021943, intron 5 of 5) 316652 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 391-146 chr18 34254348 34254635 + 2 NA Intergenic PRIMA41-int|LTR|ERV1 -30940 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 408-90 chr12 112782709 112782990 + 2 NA intron (NM_001347952, intron 1 of 21) L1M5|LINE|L1 -8689 NM_001347953 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 335-73 chr10 105940244 105940507 + 2 NA Intergenic Intergenic -120042 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 316-447 chr5 94737953 94738153 + 2 NA intron (NM_001297777, intron 16 of 19) intron (NM_001297777, intron 16 of 19) 119384 NM_032290 84250 Hs.657315 NM_032290 ENSG00000133302 SLF1 ANKRD32|BRCTD1|BRCTx SMC5-SMC6 complex localization factor 1 protein-coding 189-27 chr11 42865470 42865582 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 403843 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 331-88 chr11 45765536 45765729 + 2 NA Intergenic Intergenic -5800 NR_027134 374387 Hs.632142 NM_199137 ENSG00000205106 LINC02716 DKFZp779M0652 long intergenic non-protein coding RNA 2716 ncRNA 214-344 chr8 136240067 136240187 + 2 NA Intergenic Intergenic -290671 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 390-273 chr4 128238159 128238492 + 2 NA Intergenic Intergenic 49488 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 352-501 chr7 65384260 65384538 + 2 NA intron (NM_001287534, intron 1 of 1) intron (NM_001287534, intron 1 of 1) 10544 NM_001287534 168374 Hs.9521 NM_007139 ENSG00000146757 ZNF92 HEL-203|HPF12|HTF12|TF12 zinc finger protein 92 protein-coding 350-481 chr7 64978827 64979020 + 2 NA exon (NM_015852, exon 4 of 4) exon (NM_015852, exon 4 of 4) 12113 NM_015852 51351 Hs.250693 NM_015852 ENSG00000152926 ZNF117 H-plk|HPF9 zinc finger protein 117 protein-coding 469-170 chr3 16750028 16750384 + 2 NA Intergenic L1ME3G|LINE|L1 -134749 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 269-219 chr20 10764144 10764348 + 2 NA Intergenic Intergenic 11156 NR_110611 101929395 Hs.244862 NR_110611 LINC01752 - long intergenic non-protein coding RNA 1752 ncRNA 221-189 chr3 88629020 88629165 + 2 NA Intergenic Intergenic 290636 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 435-68 chr12 117288335 117288693 + 2 NA intron (NM_001204213, intron 3 of 27) intron (NM_001204213, intron 3 of 27) 16538 NM_001204213 4842 Hs.654410 NM_000620 ENSG00000089250 NOS1 IHPS1|N-NOS|NC-NOS|NOS|bNOS|nNOS nitric oxide synthase 1 protein-coding 341-506 chr7 124635346 124635646 + 2 NA Intergenic Intergenic 130296 NM_005302 2861 Hs.406094 NM_005302 ENSG00000170775 GPR37 EDNRBL|PAELR|hET(B)R-LP G protein-coupled receptor 37 protein-coding 291-184 chr18 4512747 4512955 + 2 NA Intergenic L1MD|LINE|L1 -57544 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 197-41 chr11 58186921 58187084 + 2 NA Intergenic Intergenic -3432 NM_001005283 219957 Hs.553643 NM_001005283 ENSG00000186513 OR9Q2 OR9Q2P olfactory receptor family 9 subfamily Q member 2 protein-coding 425-244 chr5 148761369 148761679 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -65069 NM_000024 154 Hs.2551 NM_000024 ENSG00000169252 ADRB2 ADRB2R|ADRBR|B2AR|BAR|BETA2AR adrenoceptor beta 2 protein-coding 239-76 chr12 47326721 47326911 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -19417 NR_135024 105369747 Hs.88617 NR_135024 LOC105369747 - uncharacterized LOC105369747 ncRNA 540-133 chr21 27769505 27769874 + 2 NA Intergenic Intergenic 47310 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 321-259 chr19 12080732 12081027 + 2 NA 3' UTR (NM_001136501, exon 4 of 4) 3' UTR (NM_001136501, exon 4 of 4) -11418 NM_001348164 388507 Hs.127473 NM_001004314 ZNF788P ZNF788 zinc finger family member 788, pseudogene protein-coding 210-239 chr5 167418820 167418970 + 2 NA intron (NM_001122679, intron 3 of 29) intron (NM_001122679, intron 3 of 29) -154764 NM_001368145 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 381-203 chr2 125298056 125298344 + 2 NA Intergenic Intergenic 819785 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 206-175 chr4 29103790 29103932 + 2 NA Intergenic Intergenic 107077 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 488-44 chr11 38059157 38059549 + 2 NA Intergenic Intergenic 120752 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 365-104 chr12 99306700 99307019 + 2 NA intron (NM_152788, intron 12 of 25) L3|LINE|CR1 -151769 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 147-37 chr18 72589545 72589618 + 2 NA Intergenic L2c|LINE|L2 -45239 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 227-396 chr9 73994133 73994322 + 2 NA Intergenic L1MCb|LINE|L1 -377304 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 326-31 chr1 163986292 163986546 + 2 NA Intergenic Intergenic -563228 NR_104294 100422212 Hs.556898 NR_104294 LOC100422212 - eukaryotic translation initiation factor 3 subunit J pseudogene pseudo 283-420 chr7 51551278 51551555 + 2 NA Intergenic Intergenic -158160 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 306-271 chr2 238883388 238883578 + 2 NA intron (NM_001271893, intron 1 of 1) intron (NM_001271893, intron 1 of 1) 35398 NM_057179 117581 Hs.422585 NM_057179 ENSG00000233608 TWIST2 AMS|BBRSAY|DERMO1|FFDD3|SETLSS|bHLHa39 twist family bHLH transcription factor 2 protein-coding 183-171 chr9 76450844 76450954 + 2 NA intron (NM_001097634, intron 1 of 2) intron (NM_001097634, intron 1 of 2) -8253 NM_001097633 2650 Hs.521568 NM_001490 ENSG00000187210 GCNT1 C2GNT|C2GNT-L|C2GNT1|G6NT|NACGT2|NAGCT2 glucosaminyl (N-acetyl) transferase 1 protein-coding 259-209 chr2 116174808 116174993 + 2 NA Intergenic Intergenic 831085 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 412-74 chr12 124058487 124058842 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 85449 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 376-18 chr1 162551324 162551582 + 2 NA Intergenic (TTCC)n|Simple_repeat|Simple_repeat -9987 NM_001324115 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 1017-24 chr8 124131084 124131767 + 2 NA intron (NR_103547, intron 1 of 4) L1PA15|LINE|L1 40097 NR_103547 157376 Hs.662360 NM_182525 ENSG00000253868 FER1L6-AS2 C8orf78 FER1L6 antisense RNA 2 ncRNA 216-344 chr8 135301444 135301634 + 2 NA Intergenic Intergenic 67408 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 294-286 chr3 28069969 28070175 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -171547 NM_001331190 152100 Hs.444724 NM_182523 ENSG00000187118 CMC1 C3orf68 C-X9-C motif containing 1 protein-coding 340-360 chr3 59739504 59739795 + 2 NA Intergenic L1ME3B|LINE|L1 -81152 NR_149028 339902 Hs.132446 NR_149028 LOC339902 - hCG1813818 ncRNA 238-401 chr8 134912117 134912321 + 2 NA Intergenic MIR|SINE|MIR 62284 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 434-138 chr2 43114260 43114661 + 2 NA Intergenic MIRc|SINE|MIR -12015 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 342-258 chr2 151108532 151108716 + 2 NA Intergenic Intergenic 153239 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 278-12 chr1 114262764 114262946 + 2 NA Intergenic L2c|LINE|L2 -108986 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 380-243 chr3 34566175 34566474 + 2 NA Intergenic MER67D|LTR|ERV1 767694 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 380-80 chr11 133556367 133556695 + 2 NA Intergenic Intergenic -24030 NM_001012393 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 380-37 chr10 31233002 31233229 + 2 NA intron (NR_134478, intron 1 of 2) L1MA5|LINE|L1 45232 NR_134478 101929352 Hs.209289 NR_134478 LINC02664 - long intergenic non-protein coding RNA 2664 ncRNA 275-148 chr17 72229917 72230145 + 2 NA Intergenic L1MC3|LINE|L1 109011 NM_000346 6662 Hs.647409 NM_000346 ENSG00000125398 SOX9 CMD1|CMPD1|SRA1|SRXX2|SRXY10 SRY-box transcription factor 9 protein-coding 294-398 chr5 170304889 170305114 + 2 NA Intergenic Intergenic -7224 NM_005565 3937 Hs.304475 NM_005565 ENSG00000043462 LCP2 SLP-76|SLP76 lymphocyte cytosolic protein 2 protein-coding 851-45 chr8 90137385 90138049 + 2 NA Intergenic L1MEc|LINE|L1 -54838 NM_001366795 793 Hs.65425 NM_004929 ENSG00000104327 CALB1 CALB|D-28K calbindin 1 protein-coding 389-62 chr11 79838169 79838488 + 2 NA Intergenic Intergenic -397298 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 423-173 chr3 8424099 8424365 + 2 NA intron (NR_033378, intron 3 of 3) intron (NR_033378, intron 3 of 3) 77426 NR_033378 100288428 Hs.651576 NR_033378 ENSG00000227110 LMCD1-AS1 - LMCD1 antisense RNA 1 ncRNA 548-88 chr17 13369880 13370395 + 2 NA Intergenic Intergenic -63377 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 354-445 chr7 114908200 114908390 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -13859 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 286-280 chr3 66656161 66656361 + 2 NA Intergenic Intergenic 82075 NR_135533 105377143 Hs.553944 NR_135533 LOC105377143 - uncharacterized LOC105377143 ncRNA 202-179 chr3 189530693 189530841 + 2 NA Intergenic Intergenic -65979 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 232-349 chr7 35572062 35572238 + 2 NA Intergenic Intergenic 122985 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 231-326 chr7 33021144 33021282 + 2 NA intron (NM_001356996, intron 7 of 10) intron (NM_001356996, intron 7 of 10) 19693 NM_016489 51251 Hs.487933 NM_016489 ENSG00000122643 NT5C3A NT5C3|P5'N-1|P5N-1|PN-I|POMP|PSN1|UMPH|UMPH1|cN-III|hUMP1|p36 5'-nucleotidase, cytosolic IIIA protein-coding 1065-18 chr8 114602145 114602825 + 2 NA Intergenic L1MD2|LINE|L1 1065528 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 354-195 chr19 52551248 52551462 + 2 NA intron (NM_001321424, intron 4 of 4) AluSx|SINE|Alu -18918 NM_018260 55762 Hs.235167 NM_018260 ENSG00000167562 ZNF701 - zinc finger protein 701 protein-coding 236-365 chr8 124055436 124055615 + 2 NA intron (NM_001039112, intron 22 of 40) intron (NM_001039112, intron 22 of 40) -14743 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 367-374 chr5 150862477 150862665 + 2 NA intron (NM_001346557, intron 2 of 3) MLT1I|LTR|ERVL-MaLR 16048 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 342-463 chr6 96446775 96447081 + 2 NA Intergenic Intergenic -74878 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 230-130 chr15 94213933 94214137 + 2 NA Intergenic Intergenic -84166 NM_018349 55784 Hs.33368 NM_018349 ENSG00000140563 MCTP2 - multiple C2 and transmembrane domain containing 2 protein-coding 303-451 chr8 79436941 79437229 + 2 NA Intergenic Intergenic 104897 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 326-250 chr2 84156210 84156472 + 2 NA Intergenic L1MB1|LINE|L1 -134341 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 432-162 chr21 27162980 27163359 + 2 NA Intergenic L1PA16|LINE|L1 -196081 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 318-580 chr9 104249737 104249914 + 2 NA Intergenic L1ME3|LINE|L1 -20404 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 339-332 chr21 27666170 27666471 + 2 NA Intergenic Intergenic -56059 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 338-497 chr7 27362153 27362412 + 2 NA Intergenic Intergenic -115053 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 470-65 chr13 89551114 89551555 + 2 NA intron (NR_046991, intron 2 of 3) intron (NR_046991, intron 2 of 3) 13079 NR_046991 100874139 Hs.742173 NR_046991 LINC00353 - long intergenic non-protein coding RNA 353 ncRNA 233-159 chr2 25043444 25043610 + 2 NA intron (NM_001319099, intron 1 of 22) intron (NM_001319099, intron 1 of 22) 1064 NM_001319099 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 464-202 chr5 71741542 71741878 + 2 NA Intergenic MER34A|LTR|ERV1 22435 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 518-318 chr9 115753539 115753922 + 2 NA Intergenic Intergenic -9491 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 361-397 chr6 130509016 130509249 + 2 NA Intergenic Intergenic 72015 NM_052913 114801 Hs.591341 NM_052913 ENSG00000164484 TMEM200A KIAA1913|TTMA|TTMC transmembrane protein 200A protein-coding 243-306 chr3 160185536 160185714 + 2 NA intron (NR_108088, intron 3 of 9) intron (NR_108088, intron 3 of 9) 21467 NR_108088 101928376 Hs.565865 NR_108088 ENSG00000244040 IL12A-AS1 ILAS1-AS1 IL12A antisense RNA 1 ncRNA 495-134 chr20 40367282 40367706 + 2 NA Intergenic Intergenic 321742 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 445-141 chr2 188824371 188824655 + 2 NA Intergenic Intergenic -34390 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 115-48 chr8 106781628 106781706 + 2 NA Intergenic L2a|LINE|L2 -11423 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 184-13 chr1 162593166 162593306 + 2 NA intron (NM_001324117, intron 9 of 10) intron (NM_001324117, intron 9 of 10) 31337 NM_001324113 6675 Hs.492859 NM_003115 ENSG00000117143 UAP1 AGX|AGX1|AGX2|SPAG2 UDP-N-acetylglucosamine pyrophosphorylase 1 protein-coding 164-47 chr17 38932643 38932741 + 2 NA Intergenic Intergenic 7524 NR_038847 100505576 Hs.634043 NR_038847 ENSG00000263874 LINC00672 - long intergenic non-protein coding RNA 672 ncRNA 339-18 chr1 82281044 82281337 + 2 NA Intergenic Intergenic 478737 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 295-334 chr4 57051461 57051650 + 2 NA intron (NM_001553, intron 1 of 4) intron (NM_001553, intron 1 of 4) -58207 NR_034081 255130 Hs.691061 NR_034081 ENSG00000245067 IGFBP7-AS1 - IGFBP7 antisense RNA 1 ncRNA 499-58 chr12 100476260 100476635 + 2 NA intron (NR_135146, intron 1 of 10) intron (NR_135146, intron 1 of 10) 2581 NM_001206977 9971 Hs.282735 NM_005123 ENSG00000012504 NR1H4 BAR|FXR|HRR-1|HRR1|PFIC5|RIP14 nuclear receptor subfamily 1 group H member 4 protein-coding 216-341 chr8 121830645 121830813 + 2 NA Intergenic Intergenic -189289 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 527-230 chr6 127629570 127630013 + 2 NA Intergenic MIR|SINE|MIR 52617 NM_001010905 352999 Hs.226268 NM_001010905 ENSG00000184530 C6orf58 LEG1 chromosome 6 open reading frame 58 protein-coding 308-2 chr1 5157118 5157383 + 2 NA Intergenic Intergenic 502641 NM_001042478 55966 Hs.12473 NM_018836 ENSG00000196581 AJAP1 MOT8|SHREW-1|SHREW1 adherens junctions associated protein 1 protein-coding 510-56 chr12 2375143 2375495 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 105543 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 338-410 chr5 11753194 11753410 + 2 NA intron (NM_001288717, intron 1 of 20) L1PA15|LINE|L1 151144 NM_001332 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 521-266 chr9 21899984 21900496 + 2 NA Intergenic L1PA15|LINE|L1 -66899 NR_024274 51198 Hs.721053 NM_016349 CDKN2A-DT C9orf53|CDKN2A-AS1|bA149I2.3 CDKN2A divergent transcript ncRNA 324-465 chr6 72520916 72521211 + 2 NA Intergenic Intergenic -100780 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 278-40 chr10 78652587 78652817 + 2 NA Intergenic Intergenic 385360 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 365-400 chr8 88695831 88696084 + 2 NA Intergenic L1M3f|LINE|L1 -368474 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 436-270 chr6 90195827 90196167 + 2 NA intron (NM_021813, intron 4 of 8) MIRb|SINE|MIR 100846 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 256-346 chr5 163589508 163589674 + 2 NA Intergenic L1ME3G|LINE|L1 83972 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 248-133 chr15 96916110 96916288 + 2 NA Intergenic Intergenic 132764 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 410-149 chr2 155914483 155914827 + 2 NA Intergenic Intergenic 340276 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 233-104 chr14 101051885 101052099 + 2 NA promoter-TSS (NR_030162) promoter-TSS (NR_030162) -454 NR_030162 619555 NR_030162 ENSG00000207742 MIR487A MIRN487|MIRN487A|hsa-mir-487|mir-487a microRNA 487a ncRNA 302-100 chr12 26169990 26170254 + 2 NA Intergenic LTR81B|LTR|Gypsy -25214 NM_001135823 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 681-78 chr7 62644938 62645369 + 2 NA Intergenic ALR/Alpha|Satellite|centr 658903 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 318-255 chr2 40022619 40022868 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 105109 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 270-142 chr16 56751424 56751590 + 2 NA intron (NM_014669, intron 2 of 21) intron (NM_014669, intron 2 of 21) 21378 NM_014669 9688 Hs.276878 NM_014669 ENSG00000102900 NUP93 NIC96 nucleoporin 93 protein-coding 518-25 chr10 39345045 39345490 + 2 NA Intergenic ALR/Alpha|Satellite|centr 648671 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 220-329 chr6 148955532 148955713 + 2 NA non-coding (NR_038408, exon 3 of 3) non-coding (NR_038408, exon 3 of 3) 9062 NR_038408 100128176 Hs.557541 NR_038408 UST-AS1 - UST antisense RNA 1 ncRNA 241-399 chr8 91172276 91172478 + 2 NA intron (NR_148895, intron 7 of 10) HAL1ME|LINE|L1 -33108 NR_039805 100616245 NR_039805 ENSG00000266194 MIR4661 - microRNA 4661 ncRNA 388-326 chr7 62780723 62780947 + 2 NA Intergenic ALR/Alpha|Satellite|centr 523221 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 334-100 chr12 735282 735565 + 2 NA Intergenic AluSz6|SINE|Alu -17156 NM_014823 65125 Hs.744906 NM_014823 ENSG00000060237 WNK1 HSAN2|HSN2|KDP|PPP1R167|PRKWNK1|PSK|p65 WNK lysine deficient protein kinase 1 protein-coding 114-3 chr10 26745237 26745331 + 2 NA intron (NM_001321978, intron 9 of 9) intron (NM_001321978, intron 9 of 9) 47583 NM_014317 23590 Hs.558468 NM_014317 ENSG00000148459 PDSS1 COQ1|COQ10D2|COQ1A|DPS|SPS|TPRT|TPT|TPT 1|hDPS1 decaprenyl diphosphate synthase subunit 1 protein-coding 263-233 chr20 52767309 52767512 + 2 NA Intergenic Intergenic 146572 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 294-375 chr5 57727172 57727444 + 2 NA Intergenic L2c|LINE|L2 76648 NR_104668 101928505 Hs.119998 NR_104668 LOC101928505 - uncharacterized LOC101928505 ncRNA 449-222 chr5 143994399 143994829 + 2 NA Intergenic Intergenic 176045 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 541-135 chr20 7455212 7455736 + 2 NA Intergenic Intergenic 83866 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 336-442 chr5 5408773 5409073 + 2 NA Intergenic L2a|LINE|L2 -13754 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 336-331 chr20 55659938 55660128 + 2 NA Intergenic Intergenic -232836 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 217-300 chr5 89551205 89551361 + 2 NA Intergenic Intergenic 465437 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 240-444 chrX 34803727 34803893 + 2 NA Intergenic MIR|SINE|MIR -138986 NM_152631 170062 Hs.197801 NM_152631 ENSG00000189132 FAM47B - family with sequence similarity 47 member B protein-coding 222-329 chr6 104775985 104776154 + 2 NA intron (NR_146792, intron 18 of 24) intron (NR_146792, intron 18 of 24) 83477 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 304-224 chr19 36407711 36407907 + 2 NA intron (NM_001321917, intron 3 of 4) intron (NM_001321917, intron 3 of 4) 10835 NM_133466 284406 Hs.558734 NM_133466 ENSG00000181007 ZFP82 ZNF545 ZFP82 zinc finger protein protein-coding 272-472 chr9 28986729 28986944 + 2 NA intron (NM_001354574, intron 1 of 5) MER47A|DNA|TcMar-Tigger -97881 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 315-419 chr6 62577146 62577339 + 2 NA Intergenic Intergenic -291015 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 408-42 chr10 56760332 56760639 + 2 NA Intergenic Intergenic -399212 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 345-13 chr1 92769912 92770212 + 2 NA intron (NM_001308248, intron 1 of 18) MLT1D|LTR|ERVL-MaLR 15046 NM_001350197 7813 Hs.594434 NM_005665 ENSG00000067208 EVI5 EVI-5|NB4S ecotropic viral integration site 5 protein-coding 216-180 chr2 147978807 147978978 + 2 NA intron (NM_181742, intron 1 of 13) L1MA8|LINE|L1 41845 NM_001190882 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 491-51 chr12 66292197 66292634 + 2 NA Intergenic Intergenic -10078 NM_001370285 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 361-353 chr5 26920999 26921246 + 2 NA intron (NM_016279, intron 2 of 11) LTR60B|LTR|ERV1 117464 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 352-438 chr5 162179886 162180189 + 2 NA Intergenic L1PB2|LINE|L1 112395 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 176-161 chrX 95842857 95842988 + 2 NA Intergenic (AATAAT)n|Simple_repeat|Simple_repeat 494980 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 300-441 chr7 122443954 122444143 + 2 NA intron (NM_001167940, intron 15 of 29) L1ME1|LINE|L1 -139298 NM_001024613 389549 Hs.553970 NM_001024613 ENSG00000128610 FEZF1 FEZ|HH22|ZNF312B FEZ family zinc finger 1 protein-coding 309-158 chr14 70536139 70536300 + 2 NA Intergenic AluSx1|SINE|Alu -1215 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 429-167 chr2 183527850 183528199 + 2 NA Intergenic Intergenic 403581 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 424-26 chr10 55127863 55128151 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -326716 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 437-14 chr1 218099780 218100167 + 2 NA Intergenic L1MEf|LINE|L1 56468 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 372-226 chr2 54417901 54418190 + 2 NA Intergenic Intergenic -38282 NM_003128 6711 Hs.503178 NM_003128 ENSG00000115306 SPTBN1 ELF|HEL102|SPTB2|betaSpII spectrin beta, non-erythrocytic 1 protein-coding 280-419 chr8 115025981 115026250 + 2 NA Intergenic HERV16-int|LTR|ERVL 641898 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 297-40 chr10 10891616 10891886 + 2 NA intron (NM_001326328, intron 2 of 15) MIRc|SINE|MIR 60412 NR_024410 254312 Hs.498620 NR_015413 ENSG00000229240 LINC00710 - long intergenic non-protein coding RNA 710 ncRNA 336-54 chr10 8786768 8787024 + 2 NA Intergenic MLT2B1|LTR|ERVL -111093 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 218-343 chr9 23304078 23304232 + 2 NA Intergenic Intergenic 368244 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 315-36 chr1 226542188 226542467 + 2 NA Intergenic HERVL66-int|LTR|ERVL -6437 NM_001003665 375057 Hs.116827 NM_001003665 ENSG00000203685 STUM C1orf95 stum, mechanosensory transduction mediator homolog protein-coding 300-119 chr14 80400150 80400396 + 2 NA intron (NR_038355, intron 7 of 8) intron (NR_038355, intron 7 of 8) -169216 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 670-55 chr2 4607525 4607980 + 2 NA Intergenic Intergenic 48470 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 478-60 chr12 38587578 38587978 + 2 NA Intergenic Intergenic 271004 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 329-244 chr19 27352009 27352287 + 2 NA Intergenic ALR/Alpha|Satellite|centr -441283 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 629-15 chr10 24154487 24154923 + 2 NA intron (NM_001098500, intron 2 of 18) AluSx|SINE|Alu -54086 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 267-41 chr10 20211401 20211581 + 2 NA intron (NM_032812, intron 9 of 13) intron (NM_032812, intron 9 of 13) -340479 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 354-328 chr4 60388182 60388393 + 2 NA Intergenic Intergenic -534332 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 374-127 chr16 51564194 51564436 + 2 NA Intergenic L1MC4a|LINE|L1 -198204 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 272-51 chr10 67010462 67010649 + 2 NA intron (NR_111911, intron 1 of 6) intron (NR_111911, intron 1 of 6) 1598 NR_111911 101928961 Hs.687014 NR_111911 LOC101928961 - uncharacterized LOC101928961 ncRNA 303-422 chr7 44452567 44452792 + 2 NA intron (NM_015332, intron 2 of 5) intron (NM_015332, intron 2 of 5) 37979 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 385-408 chr9 79754248 79754514 + 2 NA Intergenic Intergenic -70149 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 263-95 chr13 108432558 108432812 + 2 NA Intergenic Intergenic 163056 NM_006573 10673 Hs.525157 NM_006573 ENSG00000102524 TNFSF13B BAFF|BLYS|CD257|DTL|TALL-1|TALL1|THANK|TNFSF20|TNLG7A|ZTNF4 TNF superfamily member 13b protein-coding 560-112 chr3 54832146 54832635 + 2 NA intron (NM_018398, intron 14 of 37) intron (NM_018398, intron 14 of 37) 68865 NR_046666 100874237 Hs.570583 NR_046666 ENSG00000243715 CACNA2D3-AS1 - CACNA2D3 antisense RNA 1 ncRNA 294-357 chr5 3410087 3410374 + 2 NA Intergenic L1MEg|LINE|L1 -42586 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 155-49 chr19 37593092 37593201 + 2 NA intron (NM_016536, intron 1 of 3) intron (NM_016536, intron 1 of 3) 1600 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 412-323 chr8 60734770 60735080 + 2 NA intron (NM_017780, intron 1 of 37) intron (NM_017780, intron 1 of 37) -6334 NM_001316690 55636 Hs.20395 NM_017780 ENSG00000171316 CHD7 CRG|HH5|IS3|KAL5 chromodomain helicase DNA binding protein 7 protein-coding 300-471 chr8 87487505 87487718 + 2 NA Intergenic Intergenic 386404 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 313-381 chr4 48625543 48625766 + 2 NA intron (NM_015030, intron 4 of 63) MER2|DNA|TcMar-Tigger 135402 NM_175619 326340 Hs.276457 NM_175619 ENSG00000182223 ZAR1 Z3CXXC6 zygote arrest 1 protein-coding 242-151 chr19 12300385 12300570 + 2 NA Intergenic Intergenic -5578 NM_001353553 51710 Hs.296731 NM_016264 ENSG00000197857 ZNF44 GIOT-2|KOX7|ZNF|ZNF504|ZNF55|ZNF58 zinc finger protein 44 protein-coding 365-250 chr3 2486300 2486634 + 2 NA intron (NM_175607, intron 3 of 24) intron (NM_175607, intron 3 of 24) 247638 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 174-94 chr3 117842487 117842622 + 2 NA Intergenic Intergenic -151629 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 375-81 chr11 88575545 88575860 + 2 NA intron (NM_001143831, intron 6 of 8) intron (NM_001143831, intron 6 of 8) 71126 NR_049724 100873989 Hs.616625 NR_049724 ENSG00000255082 GRM5-AS1 - GRM5 antisense RNA 1 ncRNA 369-232 chr2 229186493 229186706 + 2 NA intron (NM_001100818, intron 1 of 2) THE1B-int|LTR|ERVL-MaLR 45493 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 220-381 chr8 133428566 133428699 + 2 NA Intergenic Intergenic -131328 NM_001258433 10397 Hs.372914 NM_006096 ENSG00000104419 NDRG1 CAP43|CMT4D|DRG-1|DRG1|GC4|HMSNL|NDR1|NMSL|PROXY1|RIT42|RTP|TARG1|TDD5 N-myc downstream regulated 1 protein-coding 473-206 chr5 2944714 2945046 + 2 NA Intergenic L1MEg|LINE|L1 27026 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 350-162 chr16 54739139 54739434 + 2 NA Intergenic Intergenic 108947 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 168-86 chr5 20101543 20101676 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -113409 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 621-111 chr6 65399305 65399842 + 2 NA intron (NM_198283, intron 6 of 9) intron (NM_198283, intron 6 of 9) 98155 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 333-291 chr2 238113169 238113411 + 2 NA intron (NM_194312, intron 4 of 8) L1MEg|LINE|L1 12950 NM_194312 339768 Hs.127724 NM_194312 ENSG00000144488 ESPNL - espin like protein-coding 367-361 chr5 84670035 84670294 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -285284 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 271-486 chrX 28086773 28087006 + 2 NA Intergenic Intergenic -105440 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 172-44 chr17 3264738 3264870 + 2 NA Intergenic Intergenic 14170 NM_002551 4995 Hs.647414 NM_002551 ENSG00000221882 OR3A2 OLFRA04|OR17-14|OR17-228|OR228 olfactory receptor family 3 subfamily A member 2 protein-coding 217-102 chr13 56405257 56405408 + 2 NA Intergenic L1MA2|LINE|L1 -735586 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 219-35 chr10 69529459 69529621 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 43882 NM_020999 50674 Hs.532682 NM_020999 ENSG00000122859 NEUROG3 Atoh5|Math4B|NGN-3|bHLHa7|ngn3 neurogenin 3 protein-coding 306-354 chr4 55879909 55880157 + 2 NA intron (NM_001024924, intron 9 of 18) intron (NM_001024924, intron 9 of 18) 26383 NM_178237 55763 Hs.269665 NM_018261 ENSG00000090989 EXOC1 BM-102|SEC3|SEC3L1|SEC3P exocyst complex component 1 protein-coding 824-55 chr9 114665508 114666007 + 2 NA TTS (NM_001199233) TTS (NM_001199233) -7952 NM_001354645 105376230 Hs.147369 NM_001354645 ENSG00000230054 TEX53 - testis expressed 53 protein-coding 550-229 chr8 100579619 100580136 + 2 NA intron (NM_152628, intron 12 of 13) intron (NM_152628, intron 12 of 13) -20118 NM_198401 157567 Hs.530199 NM_198401 ENSG00000186106 ANKRD46 ANK-S|GENX-115279 ankyrin repeat domain 46 protein-coding 403-125 chr16 82899363 82899650 + 2 NA intron (NM_001220490, intron 2 of 12) intron (NM_001220490, intron 2 of 12) 90792 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 617-56 chr19 23929964 23930391 + 2 NA intron (NM_001348687, intron 3 of 3) intron (NM_001348687, intron 3 of 3) 15291 NM_001244038 730087 Hs.655305 NM_001190829 ENSG00000213967 ZNF726 ZNF92P3 zinc finger protein 726 protein-coding 370-286 chr21 30871448 30871743 + 2 NA Intergenic Intergenic 9985 NM_175858 337880 Hs.407654 NM_175858 ENSG00000182591 KRTAP11-1 HACL-1|HACL1|KAP11.1 keratin associated protein 11-1 protein-coding 255-51 chr11 15513380 15513545 + 2 NA Intergenic L1ME2|LINE|L1 -130423 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 614-83 chr3 82825643 82826210 + 2 NA Intergenic L1ME1|LINE|L1 839784 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 833-30 chr4 97886037 97886622 + 2 NA intron (NM_174952, intron 8 of 10) L1M8|LINE|L1 257147 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 347-102 chr12 102522642 102522946 + 2 NA Intergenic MIR|SINE|MIR -42231 NM_001111285 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 396-263 chr4 157688733 157688976 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy 116364 NR_026992 340017 Hs.428275 NR_026992 ENSG00000234111 LINC02433 - long intergenic non-protein coding RNA 2433 ncRNA 300-76 chr11 112446427 112446644 + 2 NA Intergenic L1MC1|LINE|L1 -35697 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 350-456 chr6 153832596 153832881 + 2 NA Intergenic (ACACAT)n|Simple_repeat|Simple_repeat -177758 NM_001145280 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 327-235 chr2 13805383 13805662 + 2 NA Intergenic Intergenic 595436 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 392-77 chr13 90695401 90695791 + 2 NA Intergenic Intergenic 202308 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 390-383 chr8 90456978 90457207 + 2 NA Intergenic LTR90B|LTR|LTR 148971 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 364-81 chr11 6079070 6079321 + 2 NA Intergenic Intergenic -28489 NM_001005181 196335 Hs.632154 NM_001005181 ENSG00000180919 OR56B4 OR11-67 olfactory receptor family 56 subfamily B member 4 protein-coding 307-210 chr19 13149441 13149645 + 2 NA promoter-TSS (NM_004907) promoter-TSS (NM_004907) 832 NM_001271609 8677 Hs.43812 NM_003765 ENSG00000104915 STX10 SYN10|hsyn10 syntaxin 10 protein-coding 292-357 chr5 117526409 117526563 + 2 NA intron (NR_046089, intron 3 of 5) L1ME1|LINE|L1 110974 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 420-273 chr7 121172220 121172531 + 2 NA intron (NM_001105533, intron 15 of 17) intron (NM_001105533, intron 15 of 17) -152992 NM_016087 51384 Hs.272375 NM_016087 ENSG00000002745 WNT16 - Wnt family member 16 protein-coding 649-102 chr7 31921550 31922092 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 148586 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 357-129 chr15 54242424 54242777 + 2 NA intron (NM_001329919, intron 6 of 31) L1M5|LINE|L1 229952 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 187-65 chr16 73110337 73110488 + 2 NA Intergenic Intergenic 18063 NR_027756 283902 Hs.382776 NM_001101347 ENSG00000260880 HCCAT5 FJ222407|HTA hepatocellular carcinoma associated transcript 5 ncRNA 339-275 chr2 129423341 129423559 + 2 NA Intergenic Intergenic -149559 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 210-266 chr7 41001230 41001348 + 2 NA Intergenic L2|LINE|L2 -21350 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 558-188 chr6 50116764 50117186 + 2 NA Intergenic Intergenic -67046 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 344-218 chr19 58205198 58205460 + 2 NA intron (NM_133502, intron 4 of 7) intron (NM_133502, intron 4 of 7) 22268 NM_133502 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 116-14 chr17 32807356 32807451 + 2 NA intron (NM_015194, intron 1 of 21) (TA)n|Simple_repeat|Simple_repeat 69721 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 429-213 chr4 100499229 100499607 + 2 NA intron (NM_001159694, intron 1 of 10) intron (NM_001159694, intron 1 of 10) 18604 NM_001159694 51705 Hs.152913 NM_016242 ENSG00000164035 EMCN EMCN2|MUC14 endomucin protein-coding 272-413 chr7 34785517 34785683 + 2 NA intron (NM_207172, intron 3 of 8) L1M1|LINE|L1 -27328 NR_033664 404744 Hs.487951 NM_207283 ENSG00000197085 NPSR1-AS1 AAA1 NPSR1 antisense RNA 1 ncRNA 558-72 chr17 54668004 54668392 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR -232493 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 228-253 chr4 101110928 101111054 + 2 NA intron (NM_001130691, intron 2 of 12) intron (NM_001130691, intron 2 of 12) 129881 NR_107033 102465868 NR_107033 ENSG00000273882 MIR8066 hsa-mir-8066 microRNA 8066 ncRNA 676-116 chr9 28396986 28397358 + 2 NA intron (NM_152570, intron 3 of 6) intron (NM_152570, intron 3 of 6) 322133 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 403-257 chr5 119153252 119153558 + 2 NA intron (NM_001290321, intron 19 of 43) L1MA7|LINE|L1 -1232 NR_049892 100847085 NR_049892 ENSG00000264536 MIR5706 - microRNA 5706 ncRNA 298-273 chr22 22084913 22085096 + 2 NA Intergenic Intergenic -41070 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 169-73 chr3 17687306 17687447 + 2 NA intron (NM_001134381, intron 1 of 23) intron (NM_001134381, intron 1 of 23) 12644 NM_001134381 9779 Hs.475629 NM_014744 ENSG00000131374 TBC1D5 - TBC1 domain family member 5 protein-coding 407-249 chr5 62086185 62086522 + 2 NA Intergenic Intergenic -219809 NM_001243953 3796 Hs.558351 NM_004520 ENSG00000068796 KIF2A CDCBM3|HK2|KIF2 kinesin family member 2A protein-coding 435-72 chr13 87898462 87898783 + 2 NA Intergenic L1PA3|LINE|L1 -88102 NR_104059 101930749 Hs.539610 NR_104059 ENSG00000223404 LINC00397 - long intergenic non-protein coding RNA 397 ncRNA 450-331 chrX 55415678 55416028 + 2 NA Intergenic L1MEd|LINE|L1 -35642 NR_130469 100847061 NR_130469 ENSG00000266328 MIR4536-2 - microRNA 4536-2 ncRNA 234-252 chr3 113005096 113005215 + 2 NA non-coding (NR_134969, exon 6 of 6) non-coding (NR_134969, exon 6 of 6) 14171 NM_014170 29083 Hs.127496 NM_014170 ENSG00000163607 GTPBP8 HSPC135 GTP binding protein 8 (putative) protein-coding 545-192 chr5 123979656 123980088 + 2 NA Intergenic MLT1F2-int|LTR|ERVL-MaLR 434455 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 215-223 chr4 66435566 66435723 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie 158820 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 286-487 chrX 44721434 44721578 + 2 NA Intergenic AluSx|SINE|Alu -122515 NM_022076 63904 Hs.534478 NM_022076 ENSG00000189037 DUSP21 LMWDSP21 dual specificity phosphatase 21 protein-coding 289-193 chr18 68005480 68005663 + 2 NA Intergenic AluSx3|SINE|Alu -190749 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 346-207 chr18 6795972 6796249 + 2 NA intron (NM_001366230, intron 1 of 17) intron (NM_001366230, intron 1 of 17) -38375 NM_001010000 79822 Hs.183114 NM_030672 ENSG00000088756 ARHGAP28 - Rho GTPase activating protein 28 protein-coding 240-32 chr10 7995100 7995277 + 2 NA intron (NM_031923, intron 4 of 6) L1MC5a|LINE|L1 57303 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 300-28 chr1 226245798 226246049 + 2 NA intron (NM_001366237, intron 10 of 13) L1MEg|LINE|L1 22259 NM_031944 83881 Hs.282079 NM_031944 ENSG00000185155 MIXL1 MILD1|MIX|MIXL Mix paired-like homeobox protein-coding 483-220 chr5 157657214 157657571 + 2 NA intron (NM_001308165, intron 2 of 5) PABL_A-int|LTR|ERV1 -4954 NM_178424 11063 Hs.529462 NM_007017 ENSG00000039600 SOX30 - SRY-box transcription factor 30 protein-coding 374-213 chr2 226175117 226175443 + 2 NA intron (NR_046102, intron 5 of 6) intron (NR_046102, intron 5 of 6) 32486 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 705-50 chr2 56312014 56312650 + 2 NA intron (NM_001348516, intron 2 of 2) intron (NM_001348516, intron 2 of 2) -126562 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 209-6 chr1 82338337 82338487 + 2 NA Intergenic Intergenic 535959 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 345-404 chr5 5626779 5627037 + 2 NA Intergenic Intergenic 204231 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 353-368 chr4 42176469 42176653 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -23906 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 246-212 chr2 172476284 172476430 + 2 NA intron (NM_001365530, intron 8 of 25) intron (NM_001365530, intron 8 of 25) -10335 NR_157573 101929947 Hs.710861 NR_157573 ITGA6-AS1 - ITGA6 antisense RNA 1 ncRNA 1064-12 chr3 187925850 187926552 + 2 NA Intergenic AluSz6|SINE|Alu 50206 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 302-207 chr2 43248245 43248402 + 2 NA intron (NM_001083953, intron 36 of 37) AluSx|SINE|Alu 21112 NR_027251 100129726 Hs.194480 NM_178529 ENSG00000279873 LINC01126 - long intergenic non-protein coding RNA 1126 ncRNA 282-432 chr7 70897802 70898077 + 2 NA Intergenic AluSz|SINE|Alu -234205 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 253-230 chr21 14078101 14078292 + 2 NA Intergenic L1MC4|LINE|L1 -97752 NR_027270 391267 Hs.364456 NM_153750 ENSG00000215559 ANKRD20A11P C21orf81 ankyrin repeat domain 20 family member A11, pseudogene pseudo 442-247 chr6 41253395 41253816 + 2 NA Intergenic Intergenic 4228 NR_002794 221438 Hs.639392 NR_002794 TREML5P TLT5|TREML2P|TREML2P1 triggering receptor expressed on myeloid cells like 5, pseudogene pseudo 260-167 chr16 89032290 89032482 + 2 NA Intergenic Intergenic -55179 NM_005187 863 Hs.513811 NM_005187 ENSG00000129993 CBFA2T3 ETO2|MTG16|MTGR2|RUNX1T3|ZMYND4 CBFA2/RUNX1 partner transcriptional co-repressor 3 protein-coding 300-220 chr2 209686698 209686961 + 2 NA intron (NM_001039538, intron 7 of 14) intron (NM_001039538, intron 7 of 14) -85003 NM_182587 285175 Hs.396201 NM_032504 ENSG00000144406 UNC80 C2orf21|UNC-80 unc-80 homolog, NALCN channel complex subunit protein-coding 740-37 chr18 46577189 46577704 + 2 NA intron (NM_144612, intron 14 of 39) intron (NM_144612, intron 14 of 39) -18134 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 262-261 chr21 26913618 26913846 + 2 NA Intergenic LTR27|LTR|ERV1 -40229 NR_039916 100616243 NR_039916 ENSG00000266133 MIR4759 - microRNA 4759 ncRNA 253-356 chr6 67807184 67807381 + 2 NA Intergenic L1MA3|LINE|L1 -248069 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 249-87 chr12 27836083 27836265 + 2 NA Intergenic Intergenic 55941 NM_020782 57542 Hs.505104 NM_020782 ENSG00000087448 KLHL42 Ctb9|KLHDC5 kelch like family member 42 protein-coding 216-70 chr12 15398998 15399174 + 2 NA intron (NM_030667, intron 1 of 26) L3|LINE|CR1 76578 NM_002848 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 486-321 chrX 44205695 44206032 + 2 NA intron (NM_025184, intron 11 of 14) L1PA17|LINE|L1 137809 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 328-45 chr1 247228590 247228834 + 2 NA Intergenic L1PREC2|LINE|L1 -26652 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 308-541 chr9 97865898 97866064 + 2 NA Intergenic L1M4|LINE|L1 12755 NM_004473 2304 NM_004473 ENSG00000178919 FOXE1 FKHL15|FOXE2|HFKH4|HFKL5|NMTC4|TITF2|TTF-2|TTF2 forkhead box E1 protein-coding 340-583 chrX 65358219 65358404 + 2 NA Intergenic L1P2|LINE|L1 -130424 NM_001010888 340554 Hs.21249 NM_001010888 ENSG00000102053 ZC3H12B CXorf32|MCPIP2 zinc finger CCCH-type containing 12B protein-coding 273-216 chr2 60631995 60632229 + 2 NA Intergenic AluJb|SINE|Alu -78458 NM_022893 53335 Hs.370549 NM_018014 ENSG00000119866 BCL11A BCL11A-L|BCL11A-S|BCL11A-XL|BCL11a-M|CTIP1|DILOS|EVI9|HBFQTL5|ZNF856 BAF chromatin remodeling complex subunit BCL11A protein-coding 553-188 chr5 17451546 17451911 + 2 NA intron (NR_134270, intron 1 of 2) intron (NR_134270, intron 1 of 2) 7718 NR_134271 102723526 NR_134270 ENSG00000249662 LINC02218 - long intergenic non-protein coding RNA 2218 ncRNA 386-360 chr8 122967304 122967660 + 2 NA intron (NM_001362797, intron 4 of 4) L1PB1|LINE|L1 58290 NM_001363963 79139 Hs.241576 NM_024295 ENSG00000136986 DERL1 DER-1|DER1|derlin-1 derlin 1 protein-coding 321-546 chr8 54695269 54695474 + 2 NA Intergenic L2a|LINE|L2 79275 NM_006269 6101 Hs.732820 NM_006269 ENSG00000104237 RP1 DCDC4A|ORP1 RP1 axonemal microtubule associated protein-coding 316-551 chr8 88727758 88728015 + 2 NA Intergenic L2a|LINE|L2 -400403 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 237-308 chr5 124624521 124624731 + 2 NA Intergenic Intergenic 120486 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 340-260 chr2 78551774 78552043 + 2 NA intron (NR_136312, intron 1 of 3) AluSz|SINE|Alu 6377 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 372-241 chr2 88578865 88579231 + 2 NA intron (NM_004836, intron 11 of 16) L1ME4a|LINE|L1 40328 NR_110236 101928371 Hs.738045 NR_110236 ENSG00000225420 LOC101928371 - uncharacterized LOC101928371 ncRNA 159-96 chr8 117996812 117996912 + 2 NA intron (NM_000127, intron 1 of 10) intron (NM_000127, intron 1 of 10) -75949 NR_145799 109623457 NR_145799 SNORD168 - small nucleolar RNA, C/D box 168 snoRNA 549-22 chr10 31477598 31477964 + 2 NA intron (NM_001323678, intron 2 of 6) L1PB4|LINE|L1 -78026 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 286-220 chr2 139501542 139501724 + 2 NA Intergenic L1PA14|LINE|L1 604309 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 387-389 chr9 35089970 35090217 + 2 NA exon (NM_152850, exon 10 of 12) exon (NM_152850, exon 10 of 12) 6456 NM_001201484 84720 Hs.522099 NM_032634 ENSG00000165282 PIGO HPMRS2 phosphatidylinositol glycan anchor biosynthesis class O protein-coding 377-55 chr10 116429404 116429630 + 2 NA intron (NM_001011709, intron 1 of 11) intron (NM_001011709, intron 1 of 11) 1670 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 469-267 chr7 63099902 63100256 + 2 NA Intergenic Intergenic 203977 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 223-371 chr9 107059151 107059369 + 2 NA intron (NR_126029, intron 4 of 4) intron (NR_126029, intron 4 of 4) 43728 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 617-79 chr3 28396329 28396776 + 2 NA intron (NM_001040432, intron 2 of 9) intron (NM_001040432, intron 2 of 9) 47403 NM_001324169 152098 Hs.510635 NM_001040432 ENSG00000206559 ZCWPW2 ZCW2 zinc finger CW-type and PWWP domain containing 2 protein-coding 180-137 chr5 90779856 90780007 + 2 NA intron (NR_003149, intron 64 of 89) intron (NR_003149, intron 64 of 89) 221134 NM_032119 84059 Hs.591777 NM_032119 ENSG00000164199 ADGRV1 FEB4|GPR98|MASS1|USH2B|USH2C|VLGR1|VLGR1b adhesion G protein-coupled receptor V1 protein-coding 492-119 chr19 53220041 53220475 + 2 NA Intergenic Intergenic 7310 NR_073396 390963 Hs.444446 NM_001001675 ZNF818P ZNF818 zinc finger protein 818, pseudogene pseudo 410-160 chr2 230796992 230797197 + 2 NA intron (NM_001130850, intron 4 of 8) intron (NM_001130850, intron 4 of 8) -67091 NM_001287240 81618 Hs.111577 NM_030926 ENSG00000135916 ITM2C BRI3|BRICD2C|E25|E25C|ITM3 integral membrane protein 2C protein-coding 328-541 chr7 79374710 79374905 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -78150 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 238-269 chr4 65684656 65684867 + 2 NA intron (NR_034138, intron 3 of 3) HAL1|LINE|L1 -14266 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 198-127 chr2 112978271 112978398 + 2 NA intron (NM_001278568, intron 1 of 3) intron (NM_001278568, intron 1 of 3) 328 NM_019618 56300 Hs.211238 NM_019618 ENSG00000136688 IL36G IL-1F9|IL-1H1|IL-1RP2|IL1E|IL1F9|IL1H1|IL1RP2 interleukin 36 gamma protein-coding 225-291 chr5 125265084 125265277 + 2 NA intron (NR_109882, intron 4 of 5) intron (NR_109882, intron 4 of 5) -228081 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 314-484 chr5 157936329 157936506 + 2 NA Intergenic AluSz|SINE|Alu -77272 NM_014666 9685 Hs.644000 NM_014666 ENSG00000113282 CLINT1 CLINT|ENTH|EPN4|EPNR clathrin interactor 1 protein-coding 240-146 chr14 104914308 104914477 + 2 NA Intergenic L1MEd|LINE|L1 -10487 NM_001308174 122618 Hs.407101 NM_138790 ENSG00000166428 PLD4 C14orf175 phospholipase D family member 4 protein-coding 248-179 chr2 50149261 50149411 + 2 NA intron (NM_001330093, intron 18 of 22) MamSINE1|SINE|tRNA-RTE -175133 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 350-113 chr13 22095296 22095564 + 2 NA Intergenic Intergenic -114855 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 500-79 chr14 44652758 44653217 + 2 NA Intergenic Intergenic 145578 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 356-351 chr4 36513077 36513334 + 2 NA intron (NR_149124, intron 3 of 4) AluSx|SINE|Alu -86777 NR_031701 100313806 NR_031701 ENSG00000283207 MIR1255B1 MIR1255B-1|MIRN1255B1 microRNA 1255b-1 ncRNA 660-92 chr6 56996903 56997397 + 2 NA intron (NM_152731, intron 3 of 6) L2a|LINE|L2 42043 NM_152731 221336 Hs.582993 NM_152731 ENSG00000151917 BEND6 C6orf65 BEN domain containing 6 protein-coding 313-460 chr6 19917332 19917530 + 2 NA Intergenic L1PA16|LINE|L1 80061 NM_001546 3400 Hs.519601 NM_001546 ENSG00000172201 ID4 IDB4|bHLHb27 inhibitor of DNA binding 4, HLH protein protein-coding 742-86 chrX 75252869 75253447 + 2 NA intron (NM_001363821, intron 4 of 9) L1PA4|LINE|L1 -20901 NM_001307944 139596 Hs.91612 NM_145052 ENSG00000094841 UPRT FUR1|UPP uracil phosphoribosyltransferase homolog protein-coding 325-27 chr1 167257310 167257500 + 2 NA intron (NM_001365848, intron 2 of 17) intron (NM_001365848, intron 2 of 17) 36519 NM_001198786 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 252-95 chr12 79721373 79721516 + 2 NA Intergenic L2b|LINE|L2 -30347 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 361-161 chr16 59638054 59638299 + 2 NA Intergenic MER96|DNA|hAT-Tip100 117015 NR_028471 644649 Hs.250392 NR_028471 APOOP5 - apolipoprotein O pseudogene 5 pseudo 357-196 chr2 51273710 51274059 + 2 NA intron (NR_135237, intron 2 of 10) L1ME3E|LINE|L1 241283 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 371-407 chr9 15594375 15594701 + 2 NA intron (NM_001355547, intron 5 of 24) intron (NM_001355547, intron 5 of 24) 30560 NM_001355547 203238 Hs.17267 NM_173550 ENSG00000164989 CCDC171 C9orf93|bA536D16.1|bA778P13.1 coiled-coil domain containing 171 protein-coding 309-56 chr10 74968462 74968726 + 2 NA intron (NM_001370135, intron 4 of 9) intron (NM_001370135, intron 4 of 9) -53139 NR_145812 109623471 NR_145812 SNORD172 - small nucleolar RNA, C/D box 172 snoRNA 269-417 chr9 11028878 11029071 + 2 NA Intergenic Intergenic 415768 NR_110696 101929428 Hs.434446 NR_110696 ENSG00000226717 PTPRD-AS2 - PTPRD antisense RNA 2 (head to head) ncRNA 370-458 chr8 135008960 135009202 + 2 NA Intergenic Intergenic 159146 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 363-140 chr14 65369379 65369649 + 2 NA Intergenic MER41B|LTR|ERV1 -34331 NR_039857 100616176 NR_039857 ENSG00000266740 MIR4708 mir-4708 microRNA 4708 ncRNA 287-148 chr15 87141754 87141941 + 2 NA Intergenic Intergenic -153421 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 196-155 chr21 19052407 19052588 + 2 NA Intergenic L1MA9|LINE|L1 -292685 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 308-141 chr14 55239815 55240018 + 2 NA Intergenic L1MC4|LINE|L1 -31505 NM_017943 55030 Hs.525348 NM_017943 ENSG00000178974 FBXO34 CGI-301|Fbx34 F-box protein 34 protein-coding 705-11 chr10 93130883 93131467 + 2 NA Intergenic MIRc|SINE|MIR 57282 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 209-39 chr10 59917522 59917709 + 2 NA Intergenic L1ME3C|LINE|L1 -11059 NM_005436 8030 Hs.591360 NM_005436 ENSG00000108091 CCDC6 D10S170|H4|PTC|TPC|TST1 coiled-coil domain containing 6 protein-coding 252-111 chr14 28712303 28712494 + 2 NA Intergenic L1M2|LINE|L1 52921 NR_125758 103695363 Hs.569360 NR_125758 FOXG1-AS1 FOXG1-AS FOXG1 antisense RNA 1 ncRNA 202-206 chr5 44585882 44586024 + 2 NA Intergenic Intergenic -75671 NR_131946 102723839 Hs.561412 NR_131946 LINC02224 BRCAT107 long intergenic non-protein coding RNA 2224 ncRNA 183-86 chr21 28416602 28416740 + 2 NA Intergenic Intergenic -122647 NR_026552 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 284-100 chr12 127764089 127764244 + 2 NA Intergenic Intergenic -108578 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 306-188 chr16 82926004 82926196 + 2 NA intron (NM_001220490, intron 2 of 12) Charlie19a|DNA|hAT-Charlie 64198 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 434-67 chr12 117157245 117157479 + 2 NA intron (NM_015002, intron 10 of 11) L1M5|LINE|L1 33108 NM_015002 23014 Hs.740376 NM_015002 ENSG00000135108 FBXO21 FBX21 F-box protein 21 protein-coding 215-13 chr1 174535259 174535410 + 2 NA intron (NM_001366446, intron 13 of 25) intron (NM_001366446, intron 13 of 25) 87370 NM_005684 9293 Hs.673850 NM_005684 ENSG00000203737 GPR52 - G protein-coupled receptor 52 protein-coding 252-142 chr16 28047452 28047697 + 2 NA intron (NM_001109763, intron 1 of 6) L1M6|LINE|L1 16140 NM_001109763 146395 Hs.91910 NM_144675 ENSG00000169181 GSG1L PRO19651 GSG1 like protein-coding 314-320 chr2 211795381 211795548 + 2 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 630896 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 619-68 chr2 65955599 65956006 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 402526 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 143-79 chr7 90784066 90784173 + 2 NA intron (NM_012395, intron 3 of 13) L1MA4|LINE|L1 74303 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 113-21 chr15 64349555 64349657 + 2 NA intron (NM_001329606, intron 1 of 11) intron (NM_001329606, intron 1 of 11) 6567 NM_001329605 53944 Hs.646508 NM_022048 ENSG00000169118 CSNK1G1 CK1gamma1 casein kinase 1 gamma 1 protein-coding 342-412 chr5 98370229 98370409 + 2 NA Intergenic L1MA8|LINE|L1 -209080 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 875-2 chr10 23664943 23665700 + 2 NA Intergenic AluJo|SINE|Alu -29406 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 290-474 chr8 140020968 140021202 + 2 NA intron (NM_001160372, intron 18 of 22) L1ME2|LINE|L1 79450 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 209-305 chr7 109851882 109852030 + 2 NA Intergenic Intergenic 108257 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 892-23 chr2 204797328 204797945 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 252161 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 433-83 chr14 78651468 78651723 + 2 NA intron (NR_073547, intron 6 of 20) THE1B|LTR|ERVL-MaLR 247876 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 581-92 chr21 28705221 28705635 + 2 NA Intergenic Intergenic 166110 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 304-455 chr6 39014324 39014563 + 2 NA intron (NM_001371, intron 90 of 91) L2b|LINE|L2 -34338 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 364-455 chr8 130686387 130686659 + 2 NA Intergenic Intergenic -242849 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 901-2 chr1 195376870 195377732 + 2 NA Intergenic Intergenic 711414 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 301-113 chr14 42674429 42674691 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 1067704 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 112-47 chr7 139158944 139159009 + 2 NA intron (NM_001144920, intron 7 of 16) L1M5|LINE|L1 25198 NM_001318333 79989 Hs.133020 NM_024926 ENSG00000105948 TTC26 DYF13|IFT56|dyf-13 tetratricopeptide repeat domain 26 protein-coding 279-362 chr6 55185180 55185395 + 2 NA intron (NM_001526, intron 2 of 7) intron (NM_001526, intron 2 of 7) 78827 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 326-513 chr8 20610393 20610561 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 4449 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 379-260 chr5 26708443 26708638 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 330046 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 493-227 chr4 87261663 87262103 + 2 NA Intergenic Intergenic 38700 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 347-108 chr12 132981790 132982122 + 2 NA Intergenic L1MB7|LINE|L1 -4411 NM_001330514 7574 Hs.489608 NM_019591 ENSG00000198393 ZNF26 HEL-179|KOX20 zinc finger protein 26 protein-coding 311-141 chr14 67322466 67322747 + 2 NA intron (NM_001256550, intron 13 of 14) intron (NM_001256550, intron 13 of 14) 37198 NM_015994 51382 Hs.272630 NM_015994 ENSG00000100554 ATP6V1D ATP6M|VATD|VMA8 ATPase H+ transporting V1 subunit D protein-coding 301-229 chr2 151267091 151267278 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -5321 NM_198557 375287 Hs.302442 NM_198557 ENSG00000184898 RBM43 C2orf38 RNA binding motif protein 43 protein-coding 210-314 chr9 102980019 102980182 + 2 NA Intergenic Intergenic -15233 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 239-327 chr5 114943408 114943591 + 2 NA Intergenic AluJb|SINE|Alu -170086 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 240-326 chr4 94543409 94543620 + 2 NA intron (NM_001011516, intron 3 of 9) L1MA8|LINE|L1 91572 NM_001256428 10611 Hs.480311 NM_006457 ENSG00000163110 PDLIM5 ENH|ENH1|L9|LIM PDZ and LIM domain 5 protein-coding 424-85 chr15 95426625 95426917 + 2 NA Intergenic L1MEf|LINE|L1 -6322 NR_027133 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 217-200 chr20 302571 302708 + 2 NA Intergenic Intergenic 5069 NM_033089 85364 Hs.28608 NM_033089 ENSG00000247315 ZCCHC3 C20orf99 zinc finger CCHC-type containing 3 protein-coding 249-363 chr6 143723000 143723148 + 2 NA intron (NM_001100165, intron 2 of 11) L3|LINE|CR1 45109 NM_001100164 9749 Hs.102471 NM_014721 ENSG00000112419 PHACTR2 C6orf56 phosphatase and actin regulator 2 protein-coding 325-415 chr4 170385486 170385698 + 2 NA Intergenic L1M1|LINE|L1 159001 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 212-20 chr1 196152367 196152497 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -63717 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 194-94 chr2 104205559 104205721 + 2 NA Intergenic AluSx|SINE|Alu 202692 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 272-135 chr15 91680279 91680449 + 2 NA Intergenic MIRb|SINE|MIR -173344 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 297-343 chr4 137330366 137330645 + 2 NA Intergenic L1MEg|LINE|L1 -117706 NR_149105 105377441 Hs.668386 NR_149105 LINC02511 - long intergenic non-protein coding RNA 2511 ncRNA 338-337 chr3 70385916 70386162 + 2 NA Intergenic Intergenic -73401 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 518-38 chr10 92693498 92693968 + 2 NA intron (NM_002729, intron 3 of 3) intron (NM_002729, intron 3 of 3) 3778 NM_002729 3087 Hs.118651 NM_002729 ENSG00000152804 HHEX HEX|HMPH|HOX11L-PEN|PRH|PRHX hematopoietically expressed homeobox protein-coding 205-156 chr2 181275497 181275652 + 2 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) 30078 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 240-333 chr4 127778911 127779068 + 2 NA Intergenic L1MEd|LINE|L1 -2807 NM_001317381 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 225-200 chr3 38794981 38795180 + 2 NA Intergenic L2b|LINE|L2 -1070 NM_001293307 6336 Hs.250443 NM_006514 ENSG00000185313 SCN10A FEPS2|Nav1.8|PN3|SNS|hPN3 sodium voltage-gated channel alpha subunit 10 protein-coding 229-336 chr6 66677220 66677446 + 2 NA Intergenic Intergenic 889454 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 341-209 chr18 44190898 44191092 + 2 NA Intergenic L1ME1|LINE|L1 340702 NR_110792 101927921 Hs.464986 NR_110792 ENSG00000267337 LINC01478 - long intergenic non-protein coding RNA 1478 ncRNA 342-101 chr12 9829877 9830051 + 2 NA intron (NR_120305, intron 1 of 3) intron (NR_120305, intron 1 of 3) 2483 NR_159361 51348 Hs.183125 NM_016523 ENSG00000150045 KLRF1 CLEC5C|NKp80 killer cell lectin like receptor F1 protein-coding 255-16 chr1 203898601 203898842 + 2 NA Intergenic L1MEc|LINE|L1 36874 NM_001328638 6635 Hs.334612 NM_003094 ENSG00000182004 SNRPE HYPT11|SME|Sm-E|snRNP-E small nuclear ribonucleoprotein polypeptide E protein-coding 164-106 chr7 79713130 79713245 + 2 NA Intergenic Intergenic 259227 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 240-33 chr10 13828080 13828288 + 2 NA intron (NM_001318336, intron 2 of 23) L1PB4|LINE|L1 -120617 NM_001318338 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 422-233 chr5 23176784 23177066 + 2 NA Intergenic L1PA10|LINE|L1 -323581 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 139-42 chr2 43224205 43224321 + 2 NA 3' UTR (NM_006887, exon 2 of 2) 3' UTR (NM_006887, exon 2 of 2) 2343 NM_006887 678 Hs.503093 NM_006887 ENSG00000152518 ZFP36L2 BRF2|ERF-2|ERF2|RNF162C|TIS11D ZFP36 ring finger protein like 2 protein-coding 480-254 chr6 94156973 94157390 + 2 NA Intergenic Intergenic 438878 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 408-253 chr4 159585344 159585675 + 2 NA Intergenic Intergenic 192275 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 553-47 chr12 40583069 40583556 + 2 NA Intergenic L2c|LINE|L2 -109127 NM_001843 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 201-202 chr5 103003624 103003805 + 2 NA intron (NM_001364590, intron 18 of 25) intron (NM_001364590, intron 18 of 25) 116424 NR_134299 54826 Hs.24088 NM_017676 ENSG00000145723 GIN1 GIN-1|TGIN1|ZH2C2 gypsy retrotransposon integrase 1 protein-coding 631-89 chr3 191308389 191308888 + 2 NA intron (NM_198152, intron 3 of 8) MER20|DNA|hAT-Charlie -20756 NM_174908 152137 Hs.478682 NM_174908 ENSG00000152492 CCDC50 C3orf6|DFNA44|YMER coiled-coil domain containing 50 protein-coding 253-428 chr9 70444768 70444929 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -30191 NM_001206 687 Hs.150557 NM_001206 ENSG00000119138 KLF9 BTEB|BTEB1 Kruppel like factor 9 protein-coding 349-188 chr16 6985354 6985662 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 211699 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 563-125 chr3 88561351 88561798 + 2 NA Intergenic Intergenic 223118 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 221-30 chr10 11187030 11187193 + 2 NA intron (NM_001326339, intron 2 of 11) L1ME1|LINE|L1 22081 NM_001083591 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 430-131 chr18 75515728 75516009 + 2 NA Intergenic L2c|LINE|L2 -88165 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 563-135 chr4 28629615 28630100 + 2 NA Intergenic Intergenic -189725 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 167-110 chr8 4843356 4843478 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 151497 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 426-174 chr3 18616400 18616821 + 2 NA Intergenic Intergenic -171018 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 294-65 chr11 81676966 81677209 + 2 NA Intergenic L1PB4|LINE|L1 213749 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 291-130 chr14 69087871 69088043 + 2 NA intron (NM_003861, intron 6 of 8) MER102c|DNA|hAT-Charlie 64642 NM_001284207 8816 Hs.509780 NM_003861 ENSG00000139990 DCAF5 BCRG2|BCRP2|D14S1461E|WDR22 DDB1 and CUL4 associated factor 5 protein-coding 223-352 chr8 116152104 116152254 + 2 NA intron (NR_046215, intron 4 of 13) intron (NR_046215, intron 4 of 13) 172880 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 262-14 chr1 81946712 81946880 + 2 NA intron (NM_001366002, intron 6 of 20) intron (NM_001366002, intron 6 of 20) 144343 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 696-24 chr11 113666887 113667412 + 2 NA Intergenic L1MB7|LINE|L1 39159 NM_030770 80975 Hs.46720 NM_030770 ENSG00000166682 TMPRSS5 SPINESIN transmembrane serine protease 5 protein-coding 245-333 chr7 108081288 108081460 + 2 NA intron (NM_001318048, intron 14 of 17) LTR16A1|LTR|ERVL 48987 NM_007356 22798 Hs.62022 NM_007356 ENSG00000091128 LAMB4 - laminin subunit beta 4 protein-coding 353-188 chr17 62944287 62944483 + 2 NA TTS (NR_030363) TTS (NR_030363) 170 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 253-106 chr12 67375591 67375798 + 2 NA Intergenic Intergenic 66865 NR_146500 102724433 NR_146500 ENSG00000256172 LINC02420 - long intergenic non-protein coding RNA 2420 ncRNA 371-36 chr10 16867568 16867905 + 2 NA intron (NM_001081, intron 59 of 66) intron (NM_001081, intron 59 of 66) -50282 NM_152724 6251 Hs.524161 NM_012425 ENSG00000148484 RSU1 RSP-1 Ras suppressor protein 1 protein-coding 218-258 chr5 13326235 13326397 + 2 NA Intergenic Intergenic -293430 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 331-504 chr7 67785929 67786157 + 2 NA Intergenic Intergenic -234210 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 300-313 chr4 33167775 33167996 + 2 NA Intergenic L1MD1|LINE|L1 816847 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 394-140 chr18 930227 930548 + 2 NA Intergenic Intergenic -2394 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 465-78 chr14 29031908 29032268 + 2 NA Intergenic Intergenic -246301 NR_135255 105370424 Hs.375809 NR_135255 ENSG00000257056 LINC02282 - long intergenic non-protein coding RNA 2282 ncRNA 269-299 chr4 172864962 172865133 + 2 NA intron (NM_001034845, intron 7 of 12) intron (NM_001034845, intron 7 of 12) -138169 NR_125894 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 775-33 chr15 101603820 101604452 + 2 NA non-coding (NR_147041, exon 3 of 3) non-coding (NR_147041, exon 3 of 3) 10203 NR_147041 101927505 Hs.578394 NR_147041 LINC02348 - long intergenic non-protein coding RNA 2348 ncRNA 280-173 chr18 55907842 55908088 + 2 NA intron (NR_110755, intron 1 of 3) intron (NR_110755, intron 1 of 3) 12234 NR_110755 101927273 Hs.434335 NR_110755 ENSG00000260930 LINC01416 - long intergenic non-protein coding RNA 1416 ncRNA 296-94 chr12 18161835 18162055 + 2 NA Intergenic MER57A-int|LTR|ERV1 -71752 NM_001286201 79785 Hs.732831 NM_024730 ENSG00000111404 RERGL - RERG like protein-coding 339-320 chr20 43062398 43062613 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 93762 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 604-83 chr2 81584225 81584610 + 2 NA Intergenic Intergenic -117471 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 358-377 chr5 97390900 97391205 + 2 NA Intergenic L1MC3|LINE|L1 -113644 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 324-545 chr8 121702196 121702415 + 2 NA Intergenic L1ME3A|LINE|L1 -60865 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 699-6 chr1 90302483 90303069 + 2 NA Intergenic MIRb|SINE|MIR 307666 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 424-245 chr6 139941663 139942013 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger -34481 NR_121622 100507477 Hs.179213 NR_121622 ENSG00000236013 LOC100507477 - uncharacterized LOC100507477 ncRNA 368-349 chr5 3471206 3471428 + 2 NA intron (NR_033898, intron 2 of 4) L1ME1|LINE|L1 18501 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 336-205 chr17 8790994 8791208 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 8264 NM_152599 162387 Hs.213603 NM_152599 ENSG00000185156 MFSD6L - major facilitator superfamily domain containing 6 like protein-coding 502-105 chr16 64840999 64841475 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 280826 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 328-247 chr2 18928703 18929001 + 2 NA Intergenic Intergenic 98119 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 133-66 chr5 117727986 117728102 + 2 NA Intergenic Intergenic -2317 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 587-26 chr11 54881694 54882093 + 2 NA Intergenic ALR/Alpha|Satellite|centr 175061 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 507-146 chr2 223492860 223493201 + 2 NA Intergenic AluSq2|SINE|Alu 109331 NM_003469 7857 Hs.516726 NM_003469 ENSG00000171951 SCG2 CHGC|EM66|SN|SgII secretogranin II protein-coding 268-34 chr10 26170047 26170291 + 2 NA intron (NM_017433, intron 28 of 34) intron (NM_017433, intron 28 of 34) -46138 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 186-123 chr4 102177297 102177402 + 2 NA Intergenic L2a|LINE|L2 146963 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 392-261 chr5 128975584 128975936 + 2 NA intron (NM_001017372, intron 1 of 9) intron (NM_001017372, intron 1 of 9) 10272 NM_001017372 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 337-317 chr20 60268342 60268656 + 2 NA intron (NR_046099, intron 3 of 4) intron (NR_046099, intron 3 of 4) -39975 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 628-118 chr7 37377880 37378376 + 2 NA intron (NM_001206480, intron 1 of 21) intron (NM_001206480, intron 1 of 21) -24460 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 286-311 chr4 52782521 52782709 + 2 NA Intergenic Intergenic -7379 NR_040106 152578 Hs.383806 NR_040106 ENSG00000250302 LINC01618 - long intergenic non-protein coding RNA 1618 ncRNA 637-107 chr7 27967429 27967873 + 2 NA intron (NM_175061, intron 2 of 4) intron (NM_175061, intron 2 of 4) -212806 NR_034097 100128081 Hs.434307 NR_034097 JAZF1-AS1 - JAZF1 antisense RNA 1 ncRNA 256-217 chr2 149753118 149753254 + 2 NA intron (NR_110240, intron 2 of 2) L1MEg|LINE|L1 106005 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 274-309 chr5 51912929 51913108 + 2 NA Intergenic Intergenic -95013 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 376-258 chr3 112872140 112872398 + 2 NA Intergenic L1MA3|LINE|L1 -26319 NM_001370552 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 690-87 chr5 172371087 172371516 + 2 NA intron (NM_001017995, intron 6 of 12) intron (NM_001017995, intron 6 of 12) 83222 NM_001308175 285590 Hs.285666 NM_001017995 ENSG00000174705 SH3PXD2B FAD49|FTHS|HOFI|KIAA1295|TKS4|TSK4 SH3 and PX domains 2B protein-coding 432-17 chr1 204233732 204234092 + 2 NA intron (NM_014935, intron 17 of 22) MLT1C-int|LTR|ERVL-MaLR -19924 NM_198447 127845 Hs.532401 NM_198447 ENSG00000174567 GOLT1A CGI-141|GOT1|HMFN1187|YMR292W|hGOT1b golgi transport 1A protein-coding 303-30 chr10 8527039 8527233 + 2 NA Intergenic L2c|LINE|L2 67255 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 279-394 chr7 51115706 51115949 + 2 NA intron (NM_015198, intron 6 of 12) L1MEf|LINE|L1 200982 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 253-85 chr11 110778170 110778374 + 2 NA Intergenic Intergenic -65083 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 278-64 chr12 2694976 2695213 + 2 NA 3' UTR (NM_001129827, exon 49 of 49) 3' UTR (NM_001129827, exon 49 of 49) -3937 NR_045725 100652846 Hs.683896 NR_045725 ENSG00000246627 CACNA1C-AS1 - CACNA1C antisense RNA 1 ncRNA 339-257 chr2 66124590 66124881 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 233593 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 217-2 chr1 12013619 12013777 + 2 NA TTS (NM_014874) TTS (NM_014874) -5800 NM_021933 60672 Hs.8595 NM_021933 ENSG00000116691 MIIP IIP45 migration and invasion inhibitory protein protein-coding 776-8 chr10 98080253 98080809 + 2 NA Intergenic Intergenic -49703 NM_001206528 55118 Hs.500736 NM_018058 ENSG00000095713 CRTAC1 ASPIC|ASPIC1|CEP-68|CEP68|LOTUS cartilage acidic protein 1 protein-coding 338-185 chr15 81214112 81214338 + 2 NA intron (NM_001352686, intron 1 of 18) L1P4a|LINE|L1 14749 NM_001352686 3603 Hs.459095 NM_004513 ENSG00000172349 IL16 LCF|NIL16|PRIL16|prIL-16 interleukin 16 protein-coding 549-79 chr17 52979147 52979508 + 2 NA Intergenic Intergenic -6178 NM_001243552 100506650 Hs.146556 NM_001243552 C17orf112 - chromosome 17 open reading frame 112 protein-coding 230-32 chr10 13932041 13932220 + 2 NA intron (NM_018027, intron 2 of 24) L2b|LINE|L2 39766 NM_001318337 55691 Hs.330463 NM_018027 ENSG00000151474 FRMD4A CCAFCA|FRMD4|bA295P9.4 FERM domain containing 4A protein-coding 344-251 chr2 147810223 147810448 + 2 NA Intergenic Intergenic -34182 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 159-60 chr3 140650572 140650706 + 2 NA Intergenic L1M1|LINE|L1 -27425 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 432-144 chr2 184705491 184705892 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 107162 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 319-166 chr15 100173045 100173299 + 2 NA intron (NM_139057, intron 8 of 21) LTR36|LTR|ERV1 168803 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 250-147 chr16 31923353 31923546 + 2 NA Intergenic Intergenic 49642 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 886-7 chr11 47777909 47778647 + 2 NA non-coding (NR_134636, exon 36 of 36) non-coding (NR_134636, exon 36 of 36) -10937 NM_015308 23360 Hs.6834 NM_015308 ENSG00000109920 FNBP4 FBP30 formin binding protein 4 protein-coding 507-269 chr8 139307215 139307683 + 2 NA Intergenic Intergenic -393408 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 200-260 chr7 105216284 105216482 + 2 NA intron (NM_182692, intron 2 of 15) intron (NM_182692, intron 2 of 15) 52694 NM_182691 6733 Hs.285197 NM_182691 ENSG00000135250 SRPK2 SFRSK2 SRSF protein kinase 2 protein-coding 421-189 chr3 103375114 103375411 + 2 NA Intergenic Intergenic 148854 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 792 chr1 14053855 14054395 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 304710 NM_001007257 7799 Hs.371823 NM_012231 ENSG00000116731 PRDM2 HUMHOXY1|KMT8|KMT8A|MTB-ZF|RIZ|RIZ1|RIZ2 PR/SET domain 2 protein-coding 378-352 chr5 155455728 155456022 + 2 NA Intergenic Intergenic 442120 NM_001099293 285643 Hs.567824 NM_001099293 ENSG00000226650 KIF4B - kinesin family member 4B protein-coding 380-355 chr7 14653622 14653974 + 2 NA intron (NM_001350722, intron 13 of 25) L1MA5|LINE|L1 187652 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 588-88 chr20 55722190 55722532 + 2 NA Intergenic LTR37A|LTR|ERV1 283158 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 480-201 chr3 182715294 182715592 + 2 NA Intergenic Intergenic -78061 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 337-441 chr5 37530420 37530648 + 2 NA intron (NM_001345998, intron 9 of 17) L1PB1|LINE|L1 151216 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 125-13 chr12 66138171 66138256 + 2 NA intron (NM_016056, intron 6 of 6) intron (NM_016056, intron 6 of 6) 7462 NR_125724 103625681 Hs.504820 NR_125724 ENSG00000239335 LLPH-DT LLPH-AS1 LLPH divergent transcript ncRNA 360-418 chr6 126504724 126505040 + 2 NA Intergenic MER9a3|LTR|ERVK 20251 NR_030316 693173 NR_030316 ENSG00000207632 MIR588 MIRN588|hsa-mir-588 microRNA 588 ncRNA 460-119 chr18 59929079 59929354 + 2 NA Intergenic Intergenic 29220 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 142-18 chr13 83875340 83875451 + 2 NA Intergenic Intergenic 6998 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 232-85 chr13 38154631 38154802 + 2 NA Intergenic L1MEc|LINE|L1 -11484 NR_047500 100874188 Hs.569249 NR_047500 ENSG00000223685 LINC00571 - long intergenic non-protein coding RNA 571 ncRNA 422-146 chr2 62431536 62431912 + 2 NA Intergenic Intergenic 74471 NM_198276 200728 Hs.308028 NM_198276 ENSG00000186889 TMEM17 - transmembrane protein 17 protein-coding 308-481 chr8 26051444 26051626 + 2 NA Intergenic Intergenic -6122 NM_022659 64641 Hs.491292 NM_022659 ENSG00000221818 EBF2 COE2|EBF-2|O/E-3|OE-3 EBF transcription factor 2 protein-coding 254-149 chr17 10092629 10092817 + 2 NA intron (NM_201433, intron 1 of 13) MLT1D|LTR|ERVL-MaLR -56066 NM_201432 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 334-142 chr14 51946175 51946427 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -27730 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 307-379 chr5 38273932 38274195 + 2 NA intron (NM_152403, intron 1 of 21) L1MA8|LINE|L1 15504 NM_001205301 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 390-59 chr11 42370841 42371173 + 2 NA Intergenic L1MA8|LINE|L1 -117317 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 726-66 chr6 7594843 7595310 + 2 NA exon (NM_152551, exon 4 of 9) exon (NM_152551, exon 4 of 9) 4878 NM_152551 154007 Hs.13366 NM_152551 ENSG00000168566 SNRNP48 C6orf151|dJ336K20B.1|dJ512B11.2 small nuclear ribonucleoprotein U11/U12 subunit 48 protein-coding 354-147 chr14 84329475 84329800 + 2 NA Intergenic Intergenic -942295 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 196-222 chr6 46572125 46572264 + 2 NA intron (NM_016593, intron 10 of 11) L1M2|LINE|L1 -80127 NM_001251973 10231 Hs.440168 NM_005822 ENSG00000172348 RCAN2 CSP2|DSCR1L1|MCIP2|RCN2|ZAKI-4|ZAKI4 regulator of calcineurin 2 protein-coding 345-311 chr20 47861657 47861873 + 2 NA Intergenic Intergenic -75149 NM_198596 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 351-522 chr9 118590249 118590496 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -89299 NR_151725 111216287 NR_151725 LINC02578 - long intergenic non-protein coding RNA 2578 ncRNA 376-83 chr12 46872948 46873173 + 2 NA Intergenic MIRb|SINE|MIR -47063 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 450-118 chr18 72030194 72030499 + 2 NA Intergenic L1MA2|LINE|L1 -248120 NR_126324 102724913 NR_126324 ENSG00000265352 LINC01899 - long intergenic non-protein coding RNA 1899 ncRNA 227-89 chr12 104346718 104346890 + 2 NA intron (NM_001093771, intron 16 of 16) intron (NM_001093771, intron 16 of 16) 43065 NM_001008394 493861 Hs.659857 NM_001008394 ENSG00000255150 EID3 NS4EB|NSE4B|NSMCE4B EP300 interacting inhibitor of differentiation 3 protein-coding 216-71 chr12 18855204 18855409 + 2 NA Intergenic L1MA9|LINE|L1 117187 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 268-314 chr5 78315066 78315275 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -20415 NM_003664 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 248-402 chr8 87198589 87198768 + 2 NA intron (NM_173538, intron 4 of 10) L1M4|LINE|L1 332263 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 622-144 chr8 132327768 132328358 + 2 NA intron (NM_004519, intron 1 of 14) intron (NM_004519, intron 1 of 14) 119199 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 424-212 chr5 9819197 9819562 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -34998 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 300-135 chr15 87384114 87384356 + 2 NA Intergenic Intergenic -192694 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 501-235 chr7 10600680 10601112 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -101780 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 211-176 chr22 44834221 44834423 + 2 NA intron (NM_181335, intron 7 of 11) L1M4|LINE|L1 81764 NM_001198726 23779 Hs.102336 NM_181335 ENSG00000241484 ARHGAP8 BPGAP1|PP610 Rho GTPase activating protein 8 protein-coding 524 chr1 7181628 7181983 + 2 NA intron (NM_001349608, intron 3 of 21) L1MC4a|LINE|L1 207949 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 412-321 chr8 48098358 48098713 + 2 NA Intergenic L1MA2|LINE|L1 90104 NM_003350 7336 Hs.491695 NM_003350 ENSG00000169139 UBE2V2 DDVIT1|DDVit-1|EDAF-1|EDPF-1|EDPF1|MMS2|UEV-2|UEV2 ubiquitin conjugating enzyme E2 V2 protein-coding 339-506 chr6 145638992 145639218 + 2 NA intron (NM_001368131, intron 2 of 3) intron (NM_001368131, intron 2 of 3) 47772 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 272-292 chr4 28913412 28913662 + 2 NA Intergenic Intergenic -83247 NR_146499 102723764 NR_146499 LINC02364 - long intergenic non-protein coding RNA 2364 ncRNA 283-347 chr5 15895372 15895615 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -39689 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 453-287 chr8 109201940 109202333 + 2 NA Intergenic L2|LINE|L2 115508 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 573-129 chr4 102128498 102128900 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 195613 NM_001135148 64116 Hs.288034 NM_022154 ENSG00000138821 SLC39A8 BIGM103|CDG2N|LZT-Hs6|PP3105|ZIP8 solute carrier family 39 member 8 protein-coding 288-138 chr15 96925547 96925782 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 142229 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 422-4 chr1 40448965 40449225 + 2 NA promoter-TSS (NM_001369565) promoter-TSS (NM_001369565) -969 NM_001369565 65243 Hs.133034 NM_023070 ENSG00000187801 ZFP69B ZKSCAN23B|ZNF643|ZSCAN54B ZFP69 zinc finger protein B protein-coding 412-326 chr8 72834480 72834864 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 102627 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 172-123 chr7 16126565 16126676 + 2 NA intron (NM_001101426, intron 9 of 9) intron (NM_001101426, intron 9 of 9) -83866 NR_038946 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 314-467 chr5 88077638 88077836 + 2 NA Intergenic L1PA14|LINE|L1 191108 NM_001289007 153396 Hs.379972 NM_153354 ENSG00000164180 TMEM161B FLB3342|PRO1313 transmembrane protein 161B protein-coding 276-319 chr3 194869414 194869646 + 2 NA Intergenic L1ME4b|LINE|L1 -100821 NR_146990 105374293 NR_146990 ENSG00000230401 LINC01972 - long intergenic non-protein coding RNA 1972 ncRNA 380-213 chr20 8929777 8930038 + 2 NA Intergenic Intergenic 98722 NR_004386 26767 NR_004386 ENSG00000201348 RNU105B 105B|E1-2 RNA, U105B small nucleolar snoRNA 342-509 chr8 54956749 54956938 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -145185 NM_052898 114786 Hs.130197 NM_052898 ENSG00000206579 XKR4 XRG4 XK related 4 protein-coding 388-286 chr5 89798384 89798674 + 2 NA Intergenic Intergenic 218191 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 460-52 chr11 106052564 106052974 + 2 NA 3' UTR (NM_001330359, exon 3 of 3) 3' UTR (NM_001330359, exon 3 of 3) 24578 NM_198439 143879 Hs.101949 NM_152433 ENSG00000182359 KBTBD3 BKLHD3 kelch repeat and BTB domain containing 3 protein-coding 264-80 chr11 110699756 110699972 + 2 NA intron (NM_001258416, intron 1 of 15) L2b|LINE|L2 11961 NM_001258415 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 318-435 chr5 39436437 39436632 + 2 NA Intergenic AluSx1|SINE|Alu -11301 NM_001244871 1601 Hs.696631 NM_001343 ENSG00000153071 DAB2 DOC-2|DOC2 DAB adaptor protein 2 protein-coding 215-125 chr18 49348305 49348474 + 2 NA intron (NM_001353210, intron 6 of 16) intron (NM_001353210, intron 6 of 16) 112256 NM_001353215 54808 Hs.162996 NM_017653 ENSG00000141627 DYM DMC|SMC dymeclin protein-coding 256-7 chr1 51155374 51155542 + 2 NA Intergenic L1MA9|LINE|L1 53230 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 305-499 chr7 21678140 21678318 + 2 NA intron (NM_001277115, intron 30 of 81) L1MA9|LINE|L1 135190 NM_001277115 8701 Hs.520245 NM_001277115 ENSG00000105877 DNAH11 CILD7|DNAHBL|DNAHC11|DNHBL|DPL11 dynein axonemal heavy chain 11 protein-coding 256-54 chr10 108762644 108762817 + 2 NA Intergenic Intergenic -693437 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 297-379 chr5 126244799 126244966 + 2 NA Intergenic Intergenic 40293 NR_105039 101927488 Hs.432319 NR_105039 LOC101927488 - uncharacterized LOC101927488 ncRNA 425-92 chr14 86360647 86360918 + 2 NA Intergenic Intergenic 426104 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 326-207 chr18 13316847 13317015 + 2 NA intron (NM_181482, intron 2 of 5) L1MEg|LINE|L1 38826 NM_181481 753 Hs.697787 NM_004338 ENSG00000168675 LDLRAD4 C18orf1 low density lipoprotein receptor class A domain containing 4 protein-coding 548-134 chr20 42703129 42703635 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 17899 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 313-496 chr7 51550593 51550811 + 2 NA Intergenic Intergenic -157446 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 296-264 chr20 22131286 22131534 + 2 NA Intergenic L1MA9|LINE|L1 77320 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 341-569 chr9 112584135 112584309 + 2 NA intron (NM_133465, intron 2 of 3) MIR|SINE|MIR -96578 NM_001350649 100133204 Hs.662552 NM_001350649 C9orf147 - chromosome 9 open reading frame 147 protein-coding 221-202 chr3 138732367 138732527 + 2 NA intron (NM_006219, intron 8 of 23) intron (NM_006219, intron 8 of 23) -24826 NM_001256045 5291 Hs.239818 NM_006219 ENSG00000051382 PIK3CB P110BETA|PI3K|PI3KBETA|PIK3C1 phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 276-373 chr5 65433476 65433710 + 2 NA intron (NR_135689, intron 7 of 25) intron (NR_135689, intron 7 of 25) 48327 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 306-183 chr16 55122564 55122813 + 2 NA Intergenic MIR|SINE|MIR 191489 NM_001252197 10265 Hs.435730 NM_005853 ENSG00000176842 IRX5 HMMS|IRX-2a|IRXB2 iroquois homeobox 5 protein-coding 352-45 chr10 56961646 56961902 + 2 NA Intergenic Intergenic 342785 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 322-375 chr4 72820121 72820345 + 2 NA Intergenic Intergenic 249483 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 322-97 chr11 98351635 98351898 + 2 NA Intergenic Intergenic -669183 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 264-201 chr2 63552452 63552663 + 2 NA intron (NR_148705, intron 1 of 16) L1PA16|LINE|L1 35920 NM_015910 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 231-52 chr11 14348527 14348715 + 2 NA intron (NM_001177314, intron 1 of 5) L1MC4|LINE|L1 9864 NM_001177315 22800 Hs.502004 NM_012250 ENSG00000133818 RRAS2 TC21 RAS related 2 protein-coding 415-202 chr4 175637248 175637526 + 2 NA intron (NM_201592, intron 6 of 6) (TA)n|Simple_repeat|Simple_repeat 150289 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 367-37 chr1 236541580 236541844 + 2 NA intron (NM_201543, intron 7 of 10) intron (NM_201543, intron 7 of 10) -17204 NR_034040 100287902 Hs.677376 NR_034040 ENSG00000223776 LGALS8-AS1 - LGALS8 antisense RNA 1 ncRNA 360-267 chr20 47916327 47916679 + 2 NA Intergenic MER113A|DNA|hAT-Charlie -66723 NR_109942 101060004 Hs.129970 NR_109942 LINC01523 - long intergenic non-protein coding RNA 1523 ncRNA 394-345 chr9 127109894 127110221 + 2 NA intron (NM_012098, intron 1 of 4) L2a|LINE|L2 12578 NM_012098 23452 Hs.653262 NM_012098 ENSG00000136859 ANGPTL2 ARP2|HARP angiopoietin like 2 protein-coding 393-294 chr5 169958667 169959023 + 2 NA intron (NM_001346304, intron 1 of 3) intron (NM_001346304, intron 1 of 3) 21650 NM_001346304 100131897 Hs.721917 NM_001129891 ENSG00000204767 INSYN2B C5orf57|FAM196B inhibitory synaptic factor family member 2B protein-coding 247-334 chr5 106594850 106595043 + 2 NA Intergenic L1PA10|LINE|L1 416068 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 340-394 chr4 36320950 36321269 + 2 NA intron (NM_001170700, intron 8 of 9) (TTCA)n|Simple_repeat|Simple_repeat 39493 NM_001170700 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 723-40 chr2 107629002 107629676 + 2 NA Intergenic AluY|SINE|Alu 99920 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 588-54 chr17 53443258 53443664 + 2 NA Intergenic L1PA15|LINE|L1 -379466 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 608-23 chr11 77162029 77162471 + 2 NA exon (NM_001369365, exon 14 of 50) exon (NM_001369365, exon 14 of 50) 34004 NM_001127180 4647 Hs.370421 NM_000260 ENSG00000137474 MYO7A DFNA11|DFNB2|MYOVIIA|MYU7A|NSRD2|USH1B myosin VIIA protein-coding 266-349 chr5 148313296 148313559 + 2 NA intron (NM_032566, intron 2 of 3) intron (NM_032566, intron 2 of 3) 1004 NM_032566 84651 Hs.244569 NM_032566 ENSG00000145879 SPINK7 ECG2|ECRG2 serine peptidase inhibitor, Kazal type 7 (putative) protein-coding 268-36 chr10 28745784 28746017 + 2 NA intron (NR_120652, intron 2 of 3) MER77B|LTR|ERVL 2250 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 336-197 chr16 48822121 48822324 + 2 NA Intergenic L1MB8|LINE|L1 -212042 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 200-252 chr7 25961866 25962017 + 2 NA Intergenic Intergenic -11955 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 262-357 chr5 180218217 180218467 + 2 NA Intergenic L1PA15|LINE|L1 -9131 NM_175062 255426 Hs.190559 NM_175062 ENSG00000146090 RASGEF1C - RasGEF domain family member 1C protein-coding 309-122 chr13 23795604 23795872 + 2 NA intron (NM_005932, intron 16 of 18) A-rich|Low_complexity|Low_complexity -93130 NM_001014442 542767 Hs.642624 NM_001014442 PCOTH C1QTNF9B-AS1 Pro-X-Gly collagen triple helix like repeat containing protein-coding 410-168 chr20 54086611 54086850 + 2 NA Intergenic Intergenic -15965 NM_001316361 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 245-41 chr10 43583246 43583417 + 2 NA Intergenic L1MA4|LINE|L1 -8713 NM_001099284 8187 Hs.25040 NM_005674 ENSG00000196793 ZNF239 HOK-2|MOK2 zinc finger protein 239 protein-coding 537 chr1 33808022 33808452 + 2 NA intron (NM_052896, intron 10 of 69) L1ME3E|LINE|L1 -52238 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 344-362 chr4 112778567 112778790 + 2 NA intron (NM_001354269, intron 1 of 43) intron (NM_001354269, intron 1 of 43) -39319 NM_001354275 287 Hs.620557 NM_001148 ENSG00000145362 ANK2 ANK-2|LQT4|brank-2 ankyrin 2 protein-coding 272-7 chr1 61438660 61438909 + 2 NA intron (NM_001134673, intron 10 of 10) intron (NM_001134673, intron 10 of 10) -185266 NR_104180 645030 Hs.632410 NR_104180 ENSG00000237853 NFIA-AS1 - NFIA antisense RNA 1 ncRNA 316-237 chr19 48088784 48089079 + 2 NA intron (NM_001159323, intron 8 of 16) MER63A|DNA|hAT-Blackjack 21886 NM_003706 8605 Hs.631562 NM_003706 ENSG00000105499 PLA2G4C CPLA2-gamma phospholipase A2 group IVC protein-coding 361-111 chr12 72899679 72899956 + 2 NA Intergenic Intergenic -259373 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 380-130 chr15 25419191 25419564 + 2 NA TTS (NR_146177) TTS (NR_146177) 18852 NM_001354526 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 568-68 chr16 6229594 6230030 + 2 NA intron (NM_018723, intron 1 of 15) intron (NM_018723, intron 1 of 15) 210109 NM_001308117 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 126-59 chr7 53654906 53654991 + 2 NA TTS (NR_038371) TTS (NR_038371) 156983 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 246-215 chr2 188948796 188948985 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -25483 NM_000090 1281 Hs.443625 NM_000090 ENSG00000168542 COL3A1 EDS4A|EDSVASC|PMGEDSV collagen type III alpha 1 chain protein-coding 330-336 chr22 28911300 28911514 + 2 NA intron (NM_001206998, intron 1 of 8) intron (NM_001206998, intron 1 of 8) -5982 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 291-95 chr12 39628081 39628291 + 2 NA intron (NM_001031748, intron 1 of 12) Charlie16a|DNA|hAT-Charlie 2003 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 754-80 chr8 121322163 121322906 + 2 NA Intergenic Intergenic -316812 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 140-70 chr7 78046829 78046928 + 2 NA intron (NM_001301128, intron 20 of 20) intron (NM_001301128, intron 20 of 20) 206748 NM_001127359 57157 Hs.203965 NM_020432 ENSG00000006576 PHTF2 - putative homeodomain transcription factor 2 protein-coding 137-16 chr12 18616457 18616559 + 2 NA intron (NM_001288774, intron 31 of 32) intron (NM_001288774, intron 31 of 32) 121001 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 198-99 chr18 41177572 41177746 + 2 NA Intergenic L1M5|LINE|L1 343018 NR_002838 641516 Hs.116612 NR_002838 ENSG00000267313 KC6 - keratoconus gene 6 ncRNA 460-250 chr5 155799336 155799684 + 2 NA Intergenic AluSz|SINE|Alu -527247 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 853-29 chr5 42507266 42507976 + 2 NA intron (NM_001242401, intron 2 of 10) LTR33|LTR|ERVL -40422 NM_001242402 2690 Hs.125180 NM_000163 ENSG00000112964 GHR GHBP|GHIP growth hormone receptor protein-coding 218-172 chr2 154566406 154566562 + 2 NA Intergenic Intergenic -109046 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 342-14 chr1 79551813 79552014 + 2 NA Intergenic Intergenic -545183 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 323-288 chr20 6219013 6219303 + 2 NA Intergenic L1M5|LINE|L1 -95614 NM_017671 55612 Hs.472054 NM_017671 ENSG00000101311 FERMT1 C20orf42|DTGCU2|KIND1|UNC112A|URP1 fermitin family member 1 protein-coding 405-116 chr18 10955716 10956045 + 2 NA intron (NM_022068, intron 3 of 51) L2a|LINE|L2 192882 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 457-53 chr12 127697465 127697824 + 2 NA Intergenic Intergenic -42056 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 309-531 chr8 47512726 47512909 + 2 NA intron (NM_001352958, intron 10 of 21) intron (NM_001352958, intron 10 of 21) -141271 NM_001352959 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 289-220 chr2 57983876 57984145 + 2 NA intron (NM_001288838, intron 1 of 15) intron (NM_001288838, intron 1 of 15) -62632 NM_001288839 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 411-217 chr4 160099100 160099459 + 2 NA Intergenic Intergenic -321495 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 338-296 chr20 32095585 32095874 + 2 NA intron (NM_001172131, intron 11 of 12) L1MB8|LINE|L1 -13985 NM_014742 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 360-284 chr22 38122203 38122519 + 2 NA intron (NM_001199562, intron 10 of 15) intron (NM_001199562, intron 10 of 15) -11677 NM_025045 80115 Hs.474822 NM_025045 ENSG00000128298 BAIAP2L2 - BAI1 associated protein 2 like 2 protein-coding 266-136 chr16 13541595 13541828 + 2 NA Intergenic Intergenic -378446 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 240-239 chr2 154307320 154307472 + 2 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 150042 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 285-205 chr2 123529807 123530087 + 2 NA Intergenic Intergenic -456466 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 345-285 chr2 134240457 134240798 + 2 NA intron (NM_001371457, intron 1 of 16) Charlie21a|DNA|hAT-Charlie -13445 NM_002410 4249 Hs.4988 NM_002410 ENSG00000152127 MGAT5 GNT-V|GNT-VA|MGAT5A alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase protein-coding 153-84 chr6 64072145 64072239 + 2 NA intron (NM_001292009, intron 32 of 43) intron (NM_001292009, intron 32 of 43) 265356 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 507-70 chr13 26148839 26149170 + 2 NA intron (NM_183045, intron 5 of 5) MLT2B4|LTR|ERVL 72753 NM_183044 6049 Hs.136885 NM_005977 ENSG00000127870 RNF6 - ring finger protein 6 protein-coding 233-193 chr2 176894797 176895006 + 2 NA Intergenic AluY|SINE|Alu 257147 NR_110599 102724224 Hs.663125 NR_110599 ENSG00000224577 LINC01117 - long intergenic non-protein coding RNA 1117 ncRNA 345-565 chrX 67925814 67926022 + 2 NA Intergenic L1MA2|LINE|L1 381295 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 387-289 chr5 97377663 97377893 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR -126918 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 271-31 chr1 228823754 228823991 + 2 NA Intergenic L1MDa|LINE|L1 88393 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 282-6 chr1 73209984 73210210 + 2 NA Intergenic L1PA16|LINE|L1 -96073 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 457-142 chr20 51084590 51084854 + 2 NA Intergenic Intergenic -61615 NM_002237 3755 Hs.118695 NM_002237 ENSG00000026559 KCNG1 K13|KCNG|KV6.1|kH2 potassium voltage-gated channel modifier subfamily G member 1 protein-coding 336-535 chr8 33883502 33883811 + 2 NA Intergenic L1MC1|LINE|L1 -283550 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 276-318 chr3 192655423 192655585 + 2 NA intron (NM_004113, intron 2 of 5) MLT1J|LTR|ERVL-MaLR 72037 NM_004113 2257 Hs.390250 NM_004113 ENSG00000114279 FGF12 EIEE47|FGF12B|FHF1 fibroblast growth factor 12 protein-coding 212-9 chr1 111893409 111893531 + 2 NA intron (NM_172198, intron 2 of 6) intron (NM_172198, intron 2 of 6) -16187 NR_046619 100873995 Hs.535274 NR_046619 ENSG00000237556 KCND3-AS1 - KCND3 antisense RNA 1 ncRNA 251-349 chr6 136144121 136144268 + 2 NA intron (NM_018945, intron 3 of 12) L2|LINE|L2 -71367 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 228-100 chr14 69589964 69590174 + 2 NA Intergenic Intergenic -15198 NM_001271507 56936 Hs.458319 NM_020181 ENSG00000267909 CCDC177 C14orf162|PLPL coiled-coil domain containing 177 protein-coding 190-49 chr13 98255640 98255818 + 2 NA intron (NM_005766, intron 2 of 26) intron (NM_005766, intron 2 of 26) 47205 NR_036129 100422881 NR_036129 ENSG00000263399 MIR3170 mir-3170 microRNA 3170 ncRNA 239-57 chr11 55968729 55968952 + 2 NA promoter-TSS (NM_001005491) promoter-TSS (NM_001005491) -377 NM_001005491 282770 Hs.554525 NM_001005491 ENSG00000174970 OR10AG1 OR11-160 olfactory receptor family 10 subfamily AG member 1 protein-coding 435-270 chrX 8042904 8043297 + 2 NA Intergenic Intergenic -83865 NR_030380 723779 NR_030380 ENSG00000207628 MIR651 MIRN651|hsa-mir-651|mir-651 microRNA 651 ncRNA 335-212 chr18 35857225 35857434 + 2 NA Intergenic HERVL-int|LTR|ERVL 47597 NR_029616 406963 NR_029616 ENSG00000207797 MIR187 MIRN187|miR-187|miRNA187 microRNA 187 ncRNA 325-489 chr7 7303146 7303318 + 2 NA Intergenic L1PBa|LINE|L1 48078 NR_108073 101927354 Hs.520664 NR_108073 LOC101927354 - uncharacterized LOC101927354 ncRNA 437-181 chr3 179144651 179144988 + 2 NA intron (NR_125401, intron 1 of 2) L1MEf|LINE|L1 3154 NR_125401 101928739 Hs.434553 NR_125401 ENSG00000229102 LOC101928739 - uncharacterized LOC101928739 ncRNA 280-286 chr4 60825947 60826087 + 2 NA Intergenic MIR3|SINE|MIR -96602 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 593-99 chr3 46820734 46821112 + 2 NA Intergenic L1MEc|LINE|L1 -8349 NR_160551 729756 NR_160551 PRSS44P PRSS44|TESSP-4|TESSP4 serine protease 44, pseudogene pseudo 256-407 chr8 46075452 46075636 + 2 NA Intergenic ALR/Alpha|Satellite|centr 542099 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 294-451 chr8 21234212 21234401 + 2 NA Intergenic MIR|SINE|MIR -63933 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 243-251 chr20 11312882 11313055 + 2 NA Intergenic Intergenic -39585 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 470-231 chr5 166624355 166624719 + 2 NA Intergenic Charlie29a|DNA|hAT-Charlie 301833 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 268-16 chr1 166219198 166219437 + 2 NA Intergenic L1PB4|LINE|L1 -52562 NR_163271 149297 Hs.22930 NM_001017961 ENSG00000188859 FAM78B - family with sequence similarity 78 member B protein-coding 428-131 chr2 99075669 99076037 + 2 NA intron (NR_146001, intron 11 of 18) intron (NR_146001, intron 11 of 18) 65327 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 244-388 chr9 95833504 95833682 + 2 NA intron (NR_023390, intron 2 of 2) L4_C_Mam|LINE|RTE-X -42098 NM_020207 375748 Hs.432364 NM_020207 ENSG00000182150 ERCC6L2 BMFS2|C9orf102|RAD26L|SR278 ERCC excision repair 6 like 2 protein-coding 513-96 chr16 51293880 51294247 + 2 NA intron (NR_039672, intron 6 of 6) Tigger1|DNA|TcMar-Tigger -142791 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 307-309 chr3 99286551 99286720 + 2 NA Intergenic Intergenic -351959 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 221-95 chr15 95458016 95458161 + 2 NA intron (NR_027133, intron 3 of 5) intron (NR_027133, intron 3 of 5) 24995 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 372-54 chr10 82719668 82719875 + 2 NA intron (NR_163253, intron 3 of 10) LTR33A_|LTR|ERVL -486851 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 247-97 chr12 109162639 109162815 + 2 NA intron (NM_001093, intron 2 of 52) HAL1|LINE|L1 46140 NM_001093 32 Hs.234898 NM_001093 ENSG00000076555 ACACB ACC2|ACCB|HACC275 acetyl-CoA carboxylase beta protein-coding 352-95 chr12 19698082 19698374 + 2 NA Intergenic Intergenic 257629 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 189-148 chr4 85899218 85899350 + 2 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) -30732 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 248-250 chr3 110414812 110415004 + 2 NA Intergenic L2a|LINE|L2 655051 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 310-208 chr18 79900338 79900522 + 2 NA TTS (NM_012283) TTS (NM_012283) 36762 NM_012283 26251 Hs.247905 NM_012283 ENSG00000178342 KCNG2 KCNF2|KV6.2 potassium voltage-gated channel modifier subfamily G member 2 protein-coding 400-282 chr5 52531669 52532020 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -256072 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 293-210 chr2 172957060 172957273 + 2 NA intron (NM_001282901, intron 1 of 24) intron (NM_001282901, intron 1 of 24) 28961 NM_001282901 11069 Hs.470646 NM_007023 ENSG00000091428 RAPGEF4 CAMP-GEFII|CGEF2|EPAC|EPAC 2|EPAC2|Nbla00496 Rap guanine nucleotide exchange factor 4 protein-coding 343-135 chr14 46073656 46073846 + 2 NA intron (NR_102702, intron 1 of 3) AluJb|SINE|Alu 9592 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 702-6 chr10 16053791 16054365 + 2 NA Intergenic L1PA8|LINE|L1 -193545 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 289-420 chr6 130883605 130883805 + 2 NA intron (NM_001350301, intron 12 of 20) intron (NM_001350301, intron 12 of 20) 56300 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 279-63 chr11 11204580 11204781 + 2 NA Intergenic Intergenic 148570 NM_001256686 283106 Hs.654675 NM_001256686 ENSG00000254598 CSNK2A3 CSNK2A1P casein kinase 2 alpha 3 protein-coding 463-270 chr7 79851932 79852299 + 2 NA Intergenic Intergenic -282716 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 191-96 chr2 66720348 66720457 + 2 NA Intergenic Intergenic -17175 NR_110264 101927577 Hs.380543 NR_110264 ENSG00000237179 LINC01797 - long intergenic non-protein coding RNA 1797 ncRNA 423-163 chr22 16183640 16183916 + 2 NA Intergenic L1PA2|LINE|L1 -362894 NR_133911 106480334 Hs.643607 NR_133911 ENSG00000232775 BMS1P22 - BMS1 pseudogene 22 pseudo 417-51 chr11 100240920 100241330 + 2 NA intron (NM_001243270, intron 15 of 23) intron (NM_001243270, intron 15 of 23) -446163 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 302-392 chr6 151563548 151563783 + 2 NA intron (NM_025059, intron 5 of 10) L1PA17|LINE|L1 69648 NM_025059 80129 Hs.660044 NM_025059 ENSG00000120262 CCDC170 C6orf97|bA282P11.1 coiled-coil domain containing 170 protein-coding 291-455 chr8 88925543 88925754 + 2 NA Intergenic L1MEf|LINE|L1 -598165 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 801-35 chr3 153915868 153916449 + 2 NA Intergenic L1PA11|LINE|L1 -153632 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 351-386 chr5 73361167 73361477 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 23416 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 326-573 chr9 86905295 86905551 + 2 NA Intergenic LTR16E1|LTR|ERVL 42083 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 455-56 chr12 9678628 9678958 + 2 NA intron (NM_001197319, intron 1 of 2) AluJr|SINE|Alu 9080 NM_013269 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 389-132 chr17 13863507 13863870 + 2 NA Intergenic Intergenic -160810 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 458-202 chr5 60534298 60534554 + 2 NA intron (NR_024617, intron 3 of 3) LTR54B|LTR|ERV1 -38140 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 373-118 chr14 74232353 74232619 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -6963 NM_182894 338917 Hs.449771 NM_182894 ENSG00000119614 VSX2 CHX10|HOX10|MCOP2|MCOPCB3|RET1 visual system homeobox 2 protein-coding 331-313 chr20 16076961 16077262 + 2 NA Intergenic MER65-int|LTR|ERV1 -91229 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 273-150 chr15 95049358 95049603 + 2 NA Intergenic L1M2|LINE|L1 194117 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 363-17 chr1 153180579 153180780 + 2 NA intron (NR_110685, intron 2 of 2) L1ME3A|LINE|L1 6161 NR_110685 101928009 Hs.385720 NR_110685 ENSG00000229699 LOC101928009 - uncharacterized LOC101928009 ncRNA 367-153 chr16 73431995 73432324 + 2 NA Intergenic Intergenic 45354 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 779-13 chr11 83377092 83377597 + 2 NA Intergenic Intergenic -90937 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 588-143 chr7 46663829 46664245 + 2 NA Intergenic L1MDa|LINE|L1 33085 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 327-335 chr3 95920080 95920304 + 2 NA Intergenic Intergenic -236999 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 330-43 chr1 219114786 219114975 + 2 NA intron (NR_038845, intron 3 of 4) L1PA3|LINE|L1 58908 NR_038845 643723 Hs.519774 NR_038845 LYPLAL1-DT LYPLAL1-AS1 LYPLAL1 divergent transcript ncRNA 477-115 chr17 33989845 33990246 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 166761 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 148-10 chr10 88279516 88279639 + 2 NA intron (NM_018363, intron 6 of 6) intron (NM_018363, intron 6 of 6) 303741 NM_001031709 55328 Hs.149849 NM_018363 ENSG00000184719 RNLS C10orf59|RENALASE renalase, FAD dependent amine oxidase protein-coding 417-169 chr21 40008151 40008561 + 2 NA Intergenic Intergenic 140918 NM_006198 5121 Hs.80296 NM_006198 ENSG00000183036 PCP4 PEP-19 Purkinje cell protein 4 protein-coding 273-215 chr2 52362706 52362907 + 2 NA intron (NR_135237, intron 10 of 10) L1MCc|LINE|L1 -7842 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 332-71 chr10 89308067 89308310 + 2 NA 3' UTR (NM_001547, exon 2 of 2) 3' UTR (NM_001547, exon 2 of 2) 6142 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 363-37 chr10 10226276 10226483 + 2 NA Intergenic Intergenic 167657 NR_120636 101928298 Hs.385576 NR_120636 ENSG00000224788 LINC02670 - long intergenic non-protein coding RNA 2670 ncRNA 303-338 chr5 3165066 3165248 + 2 NA Intergenic Intergenic -12678 NR_104617 102467074 Hs.575250 NR_104617 ENSG00000249808 LINC01377 - long intergenic non-protein coding RNA 1377 ncRNA 401-225 chr4 35052097 35052457 + 2 NA Intergenic Intergenic -782530 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 207-209 chr4 22654183 22654360 + 2 NA Intergenic Intergenic -38643 NM_001128432 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 347-140 chr14 89092116 89092312 + 2 NA Intergenic L2b|LINE|L2 267563 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 545-187 chr5 74770596 74770981 + 2 NA exon (NM_001364506, exon 4 of 5) exon (NM_001364506, exon 4 of 5) -3417 NM_170681 84340 Hs.277154 NM_032380 ENSG00000164347 GFM2 EF-G2mt|EFG2|MRRF2|MST027|MSTP027|RRF|RRF2|RRF2mt|hEFG2|mEF-G 2 G elongation factor mitochondrial 2 protein-coding 359-491 chr8 130653476 130653752 + 2 NA Intergenic AluSx3|SINE|Alu -209940 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 372-173 chr16 49723222 49723561 + 2 NA intron (NM_001271620, intron 3 of 7) intron (NM_001271620, intron 3 of 7) -59067 NM_001330533 23090 Hs.443715 NM_015069 ENSG00000102935 ZNF423 Ebfaz|JBTS19|NPHP14|OAZ|Roaz|ZFP423|Zfp104|hOAZ zinc finger protein 423 protein-coding 242-33 chr10 29032789 29032984 + 2 NA Intergenic Tigger14a|DNA|TcMar-Tigger 186478 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 529-32 chr11 40610626 40611058 + 2 NA intron (NM_020929, intron 2 of 4) L1MB1|LINE|L1 -317712 NR_047674 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 248-374 chr7 41672083 41672273 + 2 NA Intergenic Intergenic -21741 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 388-165 chr2 105637325 105637558 + 2 NA Intergenic Intergenic -26882 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 214-37 chr10 53543438 53543631 + 2 NA Intergenic L1MA8|LINE|L1 -771834 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 713-6 chr1 209945725 209946113 + 2 NA intron (NM_153262, intron 1 of 7) Tigger1|DNA|TcMar-Tigger 7702 NM_001146262 255928 Hs.658866 NM_153262 ENSG00000143469 SYT14 SCAR11|sytXIV synaptotagmin 14 protein-coding 350-222 chr2 57555636 57555935 + 2 NA Intergenic L3|LINE|CR1 -351866 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 278-198 chr2 21185753 21185932 + 2 NA Intergenic Intergenic 61856 NM_001306137 100129278 Hs.651096 NM_001306137 ENSG00000218819 TDRD15 - tudor domain containing 15 protein-coding 199-12 chr1 158619557 158619717 + 2 NA intron (NM_003126, intron 44 of 51) intron (NM_003126, intron 44 of 51) 13198 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 290-42 chr10 22753311 22753523 + 2 NA Intergenic Intergenic -38839 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 291-489 chr9 69846128 69846353 + 2 NA intron (NM_001010940, intron 2 of 5) intron (NM_001010940, intron 2 of 5) 25423 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 705-52 chr2 66152694 66153234 + 2 NA Intergenic L1MA4A|LINE|L1 205364 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 463-134 chr2 35101934 35102268 + 2 NA Intergenic Tigger19b|DNA|TcMar-Tigger -369304 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 230-247 chr3 170606488 170606637 + 2 NA intron (NR_135556, intron 2 of 5) L1ME3A|LINE|L1 -20487 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 200-207 chr5 26872634 26872804 + 2 NA Intergenic Intergenic 165867 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 573-144 chr5 34704970 34705490 + 2 NA intron (NM_001145525, intron 4 of 19) Charlie5|DNA|hAT-Charlie 17671 NM_001145523 26064 Hs.431400 NM_015577 ENSG00000039560 RAI14 NORPEG|RAI13 retinoic acid induced 14 protein-coding 215-132 chr19 33966910 33967065 + 2 NA Intergenic L1MEg|LINE|L1 170117 NM_001129995 79047 Hs.221873 NM_024076 ENSG00000153885 KCTD15 - potassium channel tetramerization domain containing 15 protein-coding 299-165 chr17 7078222 7078416 + 2 NA intron (NM_006344, intron 2 of 8) intron (NM_006344, intron 2 of 8) 1932 NM_182906 10462 Hs.54403 NM_006344 ENSG00000132514 CLEC10A CD301|CLECSF13|CLECSF14|HML|HML2|MGL C-type lectin domain containing 10A protein-coding 387-86 chr12 83018959 83019173 + 2 NA intron (NM_152588, intron 8 of 11) L2c|LINE|L2 331911 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 350-455 chr6 151945624 151945920 + 2 NA intron (NM_001122741, intron 5 of 8) intron (NM_001122741, intron 5 of 8) 136665 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 286-366 chr5 120329879 120330090 + 2 NA Intergenic Intergenic -134294 NM_016644 51334 Hs.157461 NM_016644 ENSG00000184838 PRR16 DSC54|LARGEN proline rich 16 protein-coding 313-38 chr10 29390316 29390550 + 2 NA Intergenic Intergenic -19101 NR_110927 102724316 Hs.499209 NR_003930 ENSG00000224597 SVIL-AS1 - SVIL antisense RNA 1 ncRNA 249-437 chr8 140018028 140018178 + 2 NA intron (NM_001160372, intron 18 of 22) AluSg4|SINE|Alu 82432 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 373-74 chr11 23000577 23000817 + 2 NA Intergenic LTR10B1|LTR|ERV1 -140223 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 316-259 chr2 48347757 48348019 + 2 NA intron (NM_002158, intron 3 of 6) L1MEg|LINE|L1 33206 NM_002158 3344 Hs.468478 NM_002158 ENSG00000170802 FOXN2 HTLF forkhead box N2 protein-coding 408-54 chr11 2766138 2766543 + 2 NA intron (NM_181798, intron 11 of 15) MLT1H|LTR|ERVL-MaLR -66342 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 303-291 chr3 103601009 103601244 + 2 NA Intergenic Intergenic -77010 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 510-8 chr1 87211005 87211373 + 2 NA Intergenic Intergenic -1480 NM_001290053 101927844 Hs.694591 NM_001290053 LINC02801 - long intergenic non-protein coding RNA 2801 protein-coding 165-4 chr1 196116351 196116468 + 2 NA Intergenic L1ME4b|LINE|L1 -27694 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 228-368 chr9 28850305 28850472 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 13318 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 344-60 chr10 96687903 96688098 + 2 NA intron (NM_152309, intron 2 of 16) intron (NM_152309, intron 2 of 16) 32514 NM_152309 118788 Hs.310456 NM_152309 ENSG00000155629 PIK3AP1 BCAP phosphoinositide-3-kinase adaptor protein 1 protein-coding 338-133 chr12 83341265 83341442 + 2 NA Intergenic L1MA2|LINE|L1 654198 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 183-66 chr19 55810266 55810439 + 2 NA intron (NM_001297743, intron 1 of 8) intron (NM_001297743, intron 1 of 8) 21742 NM_001297743 204801 Hs.375039 NM_145007 ENSG00000179873 NLRP11 CLR19.6|NALP11|NOD17|PAN10|PYPAF6|PYPAF7 NLR family pyrin domain containing 11 protein-coding 469-188 chr3 153861542 153861992 + 2 NA Intergenic Intergenic -99241 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 256-181 chr19 34526034 34526228 + 2 NA Intergenic L1MB1|LINE|L1 19255 NR_146880 100129800 NR_146880 ZNF807 ZNF181P1|ZNF807P zinc finger protein 807 pseudo 269-229 chr21 20386889 20387067 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -128293 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 272-211 chr2 123674218 123674408 + 2 NA Intergenic L1M4c|LINE|L1 350861 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 235-107 chr14 87766080 87766278 + 2 NA Intergenic Intergenic -110885 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 327-305 chr21 23638633 23638912 + 2 NA Intergenic Intergenic -253937 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 398-240 chr4 45214908 45215205 + 2 NA Intergenic Intergenic -488422 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 400-336 chr8 73040838 73041206 + 2 NA intron (NM_017489, intron 9 of 9) L1MCb|LINE|L1 32158 NM_003218 7013 Hs.442707 NM_003218 ENSG00000147601 TERF1 PIN2|TRBF1|TRF|TRF1|hTRF1-AS|t-TRF1 telomeric repeat binding factor 1 protein-coding 494-277 chr7 146526957 146527313 + 2 NA Intergenic Intergenic -247136 NM_014141 26047 Hs.655684 NM_014141 ENSG00000174469 CNTNAP2 AUTS15|CASPR2|CDFE|NRXN4|PTHSL1 contactin associated protein like 2 protein-coding 454-9 chr1 117779372 117779776 + 2 NA Intergenic L1ME1|LINE|L1 150047 NM_017686 54834 Hs.310809 NM_017686 ENSG00000196505 GDAP2 MACROD3|SCAR27 ganglioside induced differentiation associated protein 2 protein-coding 301-48 chr10 93692213 93692398 + 2 NA intron (NM_145246, intron 6 of 13) L1ME4b|LINE|L1 10267 NM_001347712 118924 Hs.586650 NM_145246 ENSG00000148690 FRA10AC1 C10orf4|F26C11.1-like|FRA10A FRA10A associated CGG repeat 1 protein-coding 144-92 chr6 68176151 68176267 + 2 NA Intergenic Intergenic 120858 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 347-274 chr20 56835569 56835871 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger 206414 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 297-231 chr2 142630369 142630574 + 2 NA Intergenic Intergenic -247193 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 296-226 chr2 75006685 75006848 + 2 NA Intergenic Intergenic 48123 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 272-199 chr2 96409827 96410021 + 2 NA Intergenic LTR35A|LTR|ERV1 74158 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 507-65 chr12 24179335 24179808 + 2 NA intron (NM_152989, intron 4 of 17) Tigger5b|DNA|TcMar-Tigger -32850 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 270-449 chrX 142584786 142585042 + 2 NA Intergenic Intergenic -379624 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 342-39 chr1 190437591 190437767 + 2 NA intron (NM_199051, intron 2 of 7) intron (NM_199051, intron 2 of 7) 38331 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 1136 chr10 84692351 84693207 + 2 NA Intergenic L1M4|LINE|L1 267610 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 634-53 chr14 43746695 43747087 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 760392 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 372-380 chr4 157117758 157117977 + 2 NA intron (NM_000824, intron 2 of 9) intron (NM_000824, intron 2 of 9) 41464 NM_001166060 2743 Hs.32973 NM_000824 ENSG00000109738 GLRB HKPX2 glycine receptor beta protein-coding 284-381 chr7 48457480 48457694 + 2 NA intron (NM_152701, intron 43 of 61) intron (NM_152701, intron 43 of 61) 286129 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 318-330 chr21 26338207 26338474 + 2 NA Intergenic L1MA3|LINE|L1 -55295 NR_135516 100996571 Hs.570432 NR_135515 ENSG00000197934 CYYR1-AS1 - cysteine and tyrosine rich 1 antisense RNA 1 ncRNA 337-557 chr8 127232968 127233226 + 2 NA Intergenic Intergenic -11540 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 267-355 chr5 149284154 149284415 + 2 NA intron (NM_152406, intron 1 of 18) intron (NM_152406, intron 1 of 18) 12425 NM_001323062 134265 Hs.62930 NM_152406 ENSG00000157510 AFAP1L1 - actin filament associated protein 1 like 1 protein-coding 398-49 chr10 112031865 112032085 + 2 NA Intergenic L1M5|LINE|L1 151790 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 336-7 chr1 33916852 33917072 + 2 NA intron (NM_052896, intron 5 of 69) (TCC)n|Simple_repeat|Simple_repeat 48006 NR_038372 402779 Hs.666207 NR_038372 ENSG00000231163 CSMD2-AS1 - CSMD2 antisense RNA 1 ncRNA 314-141 chr12 130757312 130757542 + 2 NA Intergenic Intergenic -41122 NM_001351233 23504 Hs.657441 NM_015347 ENSG00000060709 RIMBP2 PPP1R133|RBP2|RIM-BP2 RIMS binding protein 2 protein-coding 250-416 chr8 29631830 29632024 + 2 NA Intergenic MIRb|SINE|MIR 116182 NR_026765 619351 Hs.566911 NR_026765 ENSG00000251191 LINC00589 C8orf75|TSLNC8 long intergenic non-protein coding RNA 589 ncRNA 196-126 chr2 61693187 61693348 + 2 NA Intergenic Intergenic -154911 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 160-129 chrX 19305930 19306054 + 2 NA Intergenic Intergenic -37901 NM_001173456 5160 Hs.530331 NM_000284 ENSG00000131828 PDHA1 PDHA|PDHAD|PDHCE1A|PHE1A pyruvate dehydrogenase E1 alpha 1 subunit protein-coding 272-431 chr7 109788002 109788243 + 2 NA Intergenic Intergenic 172091 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 246-270 chr3 116315632 116315870 + 2 NA intron (NM_001318915, intron 1 of 8) MIR|SINE|MIR -44273 NR_109998 101926903 Hs.26479 NR_109998 ENSG00000240922 LSAMP-AS1 - LSAMP antisense RNA 1 ncRNA 272-204 chr2 104246072 104246311 + 2 NA Intergenic Intergenic 162141 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 355-275 chr2 236722148 236722430 + 2 NA Intergenic L1MC4a|LINE|L1 152464 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 483-55 chr13 70043237 70043663 + 2 NA intron (NM_020866, intron 1 of 10) Tigger3b|DNA|TcMar-Tigger -63763 NR_002717 6315 Hs.676453 NR_002717 ATXN8OS KLHL1AS|NCRNA00003|SCA8 ATXN8 opposite strand lncRNA ncRNA 266-227 chr22 28945068 28945264 + 2 NA intron (NM_032173, intron 1 of 8) L1ME4a|LINE|L1 27777 NM_032173 84133 Hs.604200 NM_032173 ENSG00000183579 ZNRF3 BK747E2.3|RNF203 zinc and ring finger 3 protein-coding 289-411 chr6 56406903 56407097 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X -12872 NM_001318752 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 233-321 chr5 175407755 175407922 + 2 NA Intergenic L1MC4|LINE|L1 36344 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 196-27 chr10 32672964 32673134 + 2 NA intron (NM_001321115, intron 22 of 43) L1M4c|LINE|L1 226909 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 333-201 chr18 4433811 4434096 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 21313 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 351-472 chr8 36218115 36218405 + 2 NA Intergenic L2c|LINE|L2 -507940 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 260-161 chr16 53273463 53273629 + 2 NA intron (NM_001352157, intron 21 of 37) intron (NM_001352157, intron 21 of 37) 65095 NM_001352158 80205 Hs.59159 NM_015287 ENSG00000177200 CHD9 AD013|CHD-9|CReMM|KISH2|PRIC320 chromodomain helicase DNA binding protein 9 protein-coding 413-201 chr3 170652138 170652449 + 2 NA intron (NR_135556, intron 2 of 5) MER20|DNA|hAT-Charlie -66218 NM_020949 57709 Hs.596660 NM_020949 ENSG00000013293 SLC7A14 PPP1R142 solute carrier family 7 member 14 protein-coding 375-459 chr9 117444212 117444513 + 2 NA Intergenic Intergenic -29305 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 222-56 chr10 131757170 131757327 + 2 NA Intergenic Intergenic 32951 NR_038365 399827 Hs.523353 NM_001001677 ENSG00000189275 LINC01164 - long intergenic non-protein coding RNA 1164 ncRNA 234-367 chr7 52120906 52121116 + 2 NA Intergenic Intergenic -727755 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 244-365 chr8 79392092 79392257 + 2 NA Intergenic Intergenic 59986 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 646-72 chr20 43177611 43178005 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 12098 NM_133170 11122 Hs.526879 NM_007050 ENSG00000196090 PTPRT RPTPrho protein tyrosine phosphatase receptor type T protein-coding 590-59 chr15 96849157 96849663 + 2 NA Intergenic Intergenic 65975 NR_158220 145946 Hs.326528 NM_173499 ENSG00000185594 SPATA8 SRG8 spermatogenesis associated 8 ncRNA 330-169 chr15 34895242 34895513 + 2 NA intron (NM_014691, intron 22 of 34) L1MEf|LINE|L1 74365 NM_014691 9716 Hs.510958 NM_014691 ENSG00000021776 AQR IBP160|fSAP164 aquarius intron-binding spliceosomal factor protein-coding 216-45 chr10 98212866 98213027 + 2 NA intron (NM_001256619, intron 6 of 10) intron (NM_001256619, intron 6 of 10) 55248 NM_032211 84171 Hs.306814 NM_032211 ENSG00000138131 LOXL4 LOXC lysyl oxidase like 4 protein-coding 451-3 chr1 17721750 17721995 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -33461 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 304-513 chr8 79031958 79032112 + 2 NA Intergenic L2b|LINE|L2 194506 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 583-19 chr10 75315643 75316063 + 2 NA intron (NR_038226, intron 2 of 3) L1M1|LINE|L1 19470 NR_038225 253264 Hs.662111 NR_038223 ENSG00000226051 ZNF503-AS1 - ZNF503 antisense RNA 1 ncRNA 203-145 chr3 47359965 47360153 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -20962 NM_015466 25930 Hs.25524 NM_015466 ENSG00000076201 PTPN23 HD-PTP|HDPTP|PTP-TD14 protein tyrosine phosphatase non-receptor type 23 protein-coding 320-23 chr1 119708123 119708424 + 2 NA Intergenic MIR|SINE|MIR -3661 NM_006623 26227 Hs.487296 NM_006623 ENSG00000092621 PHGDH 3-PGDH|3PGDH|HEL-S-113|NLS|NLS1|PDG|PGAD|PGD|PGDH|PHGDHD|SERA phosphoglycerate dehydrogenase protein-coding 433-280 chr8 84450188 84450560 + 2 NA intron (NM_001354308, intron 2 of 9) intron (NM_001354308, intron 2 of 9) 34890 NM_001354308 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 360-420 chr6 134203525 134203725 + 2 NA intron (NM_001143676, intron 3 of 13) L1MEf|LINE|L1 -25764 NM_001143677 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 530-17 chr1 218481994 218482408 + 2 NA intron (NR_031644, intron 2 of 6) AluSc5|SINE|Alu -27894 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 261-312 chr5 66412358 66412519 + 2 NA Intergenic Intergenic 99166 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 294-504 chr9 99713635 99713797 + 2 NA intron (NR_109802, intron 3 of 6) L1PA16|LINE|L1 106173 NR_109802 101928438 Hs.637767 NR_109802 ENSG00000237461 LOC101928438 - uncharacterized LOC101928438 ncRNA 243-143 chr15 75425025 75425206 + 2 NA intron (NM_015477, intron 2 of 20) intron (NM_015477, intron 2 of 20) 26575 NM_015477 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 168-27 chr14 41564274 41564405 + 2 NA Intergenic Intergenic -42517 NR_144389 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 527-35 chr10 77706373 77706843 + 2 NA Intergenic L1MA2|LINE|L1 -68800 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 800-26 chr16 12732782 12733403 + 2 NA intron (NM_018340, intron 2 of 3) HAL1|LINE|L1 12771 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 300-379 chr5 171771630 171771807 + 2 NA Intergenic Intergenic -14154 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 352-335 chr3 153583761 153584099 + 2 NA intron (NR_146713, intron 4 of 6) intron (NR_146713, intron 4 of 6) 99435 NR_160966 152118 Hs.58586 NR_160966 C3orf79 - chromosome 3 open reading frame 79 ncRNA 533-111 chr2 168686089 168686523 + 2 NA intron (NM_001256126, intron 4 of 10) MLT1B|LTR|ERVL-MaLR 100123 NR_045786 100861402 Hs.506829 NR_045786 ENSG00000227617 CERS6-AS1 - CERS6 antisense RNA 1 ncRNA 244-208 chr21 30805500 30805662 + 2 NA Intergenic Intergenic 7693 NM_175857 337879 Hs.407655 NM_175857 ENSG00000183640 KRTAP8-1 KAP8.1 keratin associated protein 8-1 protein-coding 457-268 chr9 8669405 8669788 + 2 NA intron (NM_130392, intron 1 of 30) intron (NM_130392, intron 1 of 30) 64350 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 356-512 chr9 133014796 133015093 + 2 NA Intergenic AluSz6|SINE|Alu -5486 NR_132980 106635683 NR_132980 SNORD141A - small nucleolar RNA, C/D box 141A snoRNA 193-209 chr8 140096463 140096620 + 2 NA non-coding (NR_144431, exon 1 of 1) non-coding (NR_144431, exon 1 of 1) 3994 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 713-40 chr2 63502532 63502978 + 2 NA intron (NR_148705, intron 1 of 16) intron (NR_148705, intron 1 of 16) -64748 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 333-52 chr10 37882100 37882277 + 2 NA Intergenic L1ME3Cz|LINE|L1 -24085 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 430-255 chr5 164689132 164689550 + 2 NA Intergenic L1MD|LINE|L1 219062 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 332-120 chr12 33237555 33237783 + 2 NA Intergenic Intergenic 202150 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 339-359 chr3 65477903 65478188 + 2 NA intron (NM_001365904, intron 4 of 24) intron (NM_001365904, intron 4 of 24) -415771 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 211-314 chr8 134859007 134859168 + 2 NA intron (NR_125427, intron 1 of 2) MER5B|DNA|hAT-Charlie 9152 NR_125427 101927845 Hs.559609 NR_125427 ENSG00000251218 LOC101927845 - uncharacterized LOC101927845 ncRNA 161-139 chr9 131758836 131758925 + 2 NA Intergenic MIR|SINE|MIR -18936 NM_001304275 2889 Hs.127897 NM_005312 ENSG00000107263 RAPGEF1 C3G|GRF2 Rap guanine nucleotide exchange factor 1 protein-coding 536-37 chr10 115332746 115333225 + 2 NA intron (NM_207303, intron 18 of 28) MIRb|SINE|MIR 239620 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 185-59 chr14 55964906 55965039 + 2 NA Intergenic Intergenic -153439 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 285-325 chr5 14621541 14621752 + 2 NA Intergenic L1MEc|LINE|L1 30736 NR_132981 106635684 NR_132981 SNORD141B - small nucleolar RNA, C/D box 141B snoRNA 290-61 chr10 111666190 111666354 + 2 NA Intergenic L1MEc|LINE|L1 517493 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 230-376 chr8 92272751 92272963 + 2 NA Intergenic Intergenic -169472 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 321-464 chr5 62990758 62991008 + 2 NA Intergenic L1MC1|LINE|L1 412064 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 392-238 chr4 136909565 136909849 + 2 NA intron (NR_149105, intron 3 of 3) intron (NR_149105, intron 3 of 3) -284049 NR_134640 729307 Hs.552764 NR_134640 LINC02510 - long intergenic non-protein coding RNA 2510 ncRNA 284-345 chr6 46082850 46083113 + 2 NA intron (NM_001370650, intron 1 of 6) L2a|LINE|L2 -2633 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 263-151 chr17 53820454 53820609 + 2 NA Intergenic (A)n|Simple_repeat|Simple_repeat -2396 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 314-299 chr2 122802714 122802958 + 2 NA Intergenic Intergenic 270645 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 488-5 chr1 41717512 41717832 + 2 NA intron (NM_024503, intron 1 of 8) MIRc|SINE|MIR 201250 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 326-252 chr2 102800532 102800725 + 2 NA intron (NM_001321345, intron 4 of 4) intron (NM_001321345, intron 4 of 4) 38597 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 301-359 chr5 91552587 91552780 + 2 NA Intergenic Intergenic -169366 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 192-40 chr11 82250667 82250799 + 2 NA intron (NR_120571, intron 3 of 7) intron (NR_120571, intron 3 of 7) 153180 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 478-195 chr3 115603960 115604415 + 2 NA Intergenic Intergenic -19323 NM_002045 2596 Hs.134974 NM_002045 ENSG00000172020 GAP43 B-50|PP46 growth associated protein 43 protein-coding 343-539 chr8 79565826 79566073 + 2 NA Intergenic MER101B|LTR|ERV1 -45168 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 270-233 chr3 64950468 64950733 + 2 NA intron (NR_038264, intron 4 of 5) intron (NR_038264, intron 4 of 5) -262600 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 410-54 chr11 54746176 54746463 + 2 NA Intergenic ALR/Alpha|Satellite|centr 39487 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 340-327 chr20 57000170 57000424 + 2 NA Intergenic MER20|DNA|hAT-Charlie -213399 NR_110631 102723590 Hs.667674 NR_110631 BMP7-AS1 - BMP7 antisense RNA 1 ncRNA 818-52 chr6 39999075 39999618 + 2 NA Intergenic HERV1_LTRe|LTR|ERV1 -64884 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 352-379 chr4 95978733 95978918 + 2 NA Intergenic MIR|SINE|MIR 138732 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 449-9 chr1 110518476 110518827 + 2 NA exon (NM_005549, exon 1 of 1) exon (NM_005549, exon 1 of 1) 524 NM_005549 3744 Hs.248140 NM_005549 ENSG00000143105 KCNA10 Kcn1|Kv1.8 potassium voltage-gated channel subfamily A member 10 protein-coding 454-53 chr11 55753390 55753780 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -19853 NM_001001967 390142 Hs.553743 NM_001001967 ENSG00000279761 OR5D13 - olfactory receptor family 5 subfamily D member 13 (gene/pseudogene) protein-coding 392-156 chr2 136268330 136268654 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -150337 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 334-198 chr16 74175369 74175657 + 2 NA Intergenic Intergenic 40008 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 319-23 chr1 157335524 157335782 + 2 NA Intergenic Intergenic -197062 NM_005240 2117 Hs.105636 NM_005240 ENSG00000117036 ETV3 METS|PE-1|PE1 ETS variant 3 protein-coding 497-224 chr5 39318657 39318996 + 2 NA intron (NM_001737, intron 5 of 10) intron (NM_001737, intron 5 of 10) 45669 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 192-104 chr2 133810784 133810937 + 2 NA Intergenic Intergenic -242397 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 700-66 chr3 138155146 138155652 + 2 NA Intergenic L1M5|LINE|L1 19522 NM_016216 51163 Hs.477700 NM_016216 ENSG00000138231 DBR1 - debranching RNA lariats 1 protein-coding 259-418 chr8 134046811 134047000 + 2 NA Intergenic Intergenic 160409 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 527-133 chr2 81937225 81937563 + 2 NA Intergenic Intergenic -470448 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 251-4 chr1 67073495 67073659 + 2 NA Intergenic L1MB1|LINE|L1 -19429 NM_015139 23169 Hs.213642 NM_015139 ENSG00000116704 SLC35D1 SHNKND|UGTREL7 solute carrier family 35 member D1 protein-coding 578-68 chr16 79403660 79404057 + 2 NA Intergenic Intergenic 196879 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 303-449 chr8 67659814 67660038 + 2 NA intron (NM_020361, intron 1 of 10) intron (NM_020361, intron 1 of 10) 86434 NM_020361 57094 Hs.658850 NM_020361 ENSG00000165078 CPA6 CPAH|ETL5|FEB11 carboxypeptidase A6 protein-coding 245-30 chr10 7956996 7957207 + 2 NA intron (NM_031923, intron 2 of 6) intron (NM_031923, intron 2 of 6) 95390 NR_104329 399717 Hs.158992 NM_207423 ENSG00000197308 GATA3-AS1 - GATA3 antisense RNA 1 ncRNA 288-320 chr5 23177912 23178094 + 2 NA Intergenic L1PA10|LINE|L1 -324659 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 440-174 chr4 4961377 4961746 + 2 NA intron (NR_125893, intron 2 of 2) L1ME1|LINE|L1 40753 NR_125893 101928306 Hs.543743 NR_125893 LOC101928306 - uncharacterized LOC101928306 ncRNA 217-261 chr4 65390798 65390954 + 2 NA intron (NM_001281767, intron 8 of 16) intron (NM_001281767, intron 8 of 16) 278612 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 399-78 chr13 60857790 60858042 + 2 NA Intergenic MLT1H2|LTR|ERVL-MaLR 184961 NR_047003 101926930 Hs.578045 NR_047003 LINC00378 - long intergenic non-protein coding RNA 378 ncRNA 282-281 chr22 34855150 34855403 + 2 NA intron (NR_138042, intron 3 of 4) intron (NR_138042, intron 3 of 4) 142640 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 303-215 chr2 98351953 98352144 + 2 NA intron (NM_001079878, intron 1 of 6) L1MB7|LINE|L1 5592 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 306-362 chr4 81345331 81345521 + 2 NA Intergenic L1PA13|LINE|L1 126481 NM_001300735 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 225-266 chr5 16172164 16172339 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 7540 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 344-112 chr12 76989347 76989672 + 2 NA Intergenic L1MEc|LINE|L1 76060 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 480-99 chr16 35724930 35725314 + 2 NA Intergenic HSAT4|Satellite|centr -21430 NR_033985 400533 Hs.499135 NR_033985 ENSG00000261122 LINC02167 - long intergenic non-protein coding RNA 2167 ncRNA 260-295 chr3 181914899 181915070 + 2 NA Intergenic MIRc|SINE|MIR -37380 NR_104146 100996490 Hs.606987 NR_104146 ENSG00000242512 LINC01206 - long intergenic non-protein coding RNA 1206 ncRNA 357-273 chr3 80313708 80314001 + 2 NA Intergenic L1PA15|LINE|L1 -451043 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 292-32 chr1 219739779 219739973 + 2 NA Intergenic L1ME3Cz|LINE|L1 -126731 NM_001355457 643136 Hs.647764 NM_001085394 ENSG00000215817 ZC3H11B ZC3HDC11B zinc finger CCCH-type containing 11B protein-coding 537-26 chr10 64955399 64955739 + 2 NA Intergenic L1PA13|LINE|L1 -31051 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 258-66 chr11 61168766 61168935 + 2 NA Intergenic Intergenic -7424 NM_017966 55048 Hs.523715 NM_017966 ENSG00000167987 VPS37C - VPS37C subunit of ESCRT-I protein-coding 253-172 chr2 15068858 15069084 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 436254 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 454-97 chr14 84140041 84140410 + 2 NA Intergenic Intergenic -1131707 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 132-92 chr8 113074165 113074285 + 2 NA intron (NM_001363185, intron 5 of 66) intron (NM_001363185, intron 5 of 66) 302927 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 219-37 chr10 109428152 109428311 + 2 NA Intergenic L2a|LINE|L2 495015 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 485-153 chr2 184709887 184710239 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 111534 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 321-229 chr17 19565321 19565524 + 2 NA intron (NM_018242, intron 12 of 16) intron (NM_018242, intron 12 of 16) 7862 NR_003025 677885 Hs.658450 NR_003025 ENSG00000239149 SNORA59A ACA59 small nucleolar RNA, H/ACA box 59A snoRNA 515-246 chr7 33480710 33481112 + 2 NA intron (NM_001348037, intron 18 of 20) THE1D|LTR|ERVL-MaLR 351347 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 264-6 chr1 77530118 77530253 + 2 NA intron (NM_012093, intron 12 of 13) intron (NM_012093, intron 12 of 13) 152473 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 674-98 chr8 46097684 46098216 + 2 NA Intergenic GSAT|Satellite|centr 519693 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 370-20 chr1 178763995 178764222 + 2 NA intron (NM_152663, intron 1 of 19) L1PA15|LINE|L1 38864 NM_152663 55103 Hs.632485 NM_018037 ENSG00000116191 RALGPS2 dJ595C2.1 Ral GEF with PH domain and SH3 binding motif 2 protein-coding 532-255 chr7 124393935 124394315 + 2 NA Intergenic L1ME4a|LINE|L1 -42029 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 325-321 chr21 29544041 29544285 + 2 NA intron (NM_001330993, intron 15 of 16) intron (NM_001330993, intron 15 of 16) 48116 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 273-401 chr6 141651026 141651236 + 2 NA Intergenic Intergenic 437668 NM_002511 4829 Hs.552106 NM_002511 ENSG00000135577 NMBR BB1|BB1R|NMB-R neuromedin B receptor protein-coding 393-21 chr1 166970677 166970997 + 2 NA intron (NM_199351, intron 1 of 9) intron (NM_199351, intron 1 of 9) 4703 NM_199351 387597 Hs.444835 NM_199351 ENSG00000143195 ILDR2 C1orf32|dJ782G3.1 immunoglobulin like domain containing receptor 2 protein-coding 277-444 chr9 69911974 69912160 + 2 NA Intergenic Intergenic 91250 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 527-166 chr3 2880741 2881197 + 2 NA intron (NM_175607, intron 8 of 24) intron (NM_175607, intron 8 of 24) -11246 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 372-237 chr2 82801325 82801533 + 2 NA Intergenic Intergenic -55374 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 440-128 chr2 143935104 143935376 + 2 NA Intergenic Intergenic -1827 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 363-271 chr21 31385084 31385289 + 2 NA intron (NM_001353690, intron 1 of 27) AluSq2|SINE|Alu -40832 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 376-336 chr5 140757611 140757828 + 2 NA Intergenic L1MC4|LINE|L1 -28417 NM_031411 56147 Hs.199343 NM_018900 ENSG00000204970 PCDHA1 PCDH-ALPHA1 protocadherin alpha 1 protein-coding 752-55 chr4 60506246 60506814 + 2 NA Intergenic L1MA3|LINE|L1 -416089 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 321-55 chr10 33102420 33102654 + 2 NA intron (NR_160030, intron 1 of 2) AluSx4|SINE|Alu 14270 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 267-398 chr7 63817667 63817805 + 2 NA Intergenic Intergenic -181070 NR_145488 100419780 Hs.742917 NR_145488 ZNF722P ZNF722 zinc finger protein 722, pseudogene pseudo 437-135 chr2 78256301 78256652 + 2 NA intron (NR_110288, intron 1 of 3) intron (NR_110288, intron 1 of 3) 34255 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 587-98 chr22 49055170 49055556 + 2 NA Intergenic Intergenic 188593 NR_038944 100128946 Hs.535676 NR_038944 ENSG00000205632 LINC01310 WI2-81516E3.1 long intergenic non-protein coding RNA 1310 ncRNA 608-141 chr7 17573448 17573850 + 2 NA Intergenic L1MEc|LINE|L1 -14740 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 237-355 chr7 68012464 68012686 + 2 NA Intergenic AluJb|SINE|Alu -7678 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 374-58 chr11 101869439 101869750 + 2 NA Intergenic Intergenic -45416 NM_001363543 57562 Hs.156352 NM_020802 ENSG00000110318 CEP126 KIAA1377 centrosomal protein 126 protein-coding 594-170 chrX 50753483 50753888 + 2 NA intron (NR_027121, intron 1 of 9) MER33|DNA|hAT-Charlie 60359 NR_027121 57477 Hs.420541 NM_020717 ENSG00000158352 SHROOM4 SHAP|shrm4 shroom family member 4 protein-coding 579-160 chr8 23639009 23639465 + 2 NA Intergenic L1ME3E|LINE|L1 43652 NM_001256339 4824 Hs.55999 NM_006167 ENSG00000167034 NKX3-1 BAPX2|NKX3|NKX3.1|NKX3A NK3 homeobox 1 protein-coding 299-48 chr10 36829956 36830135 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 -295812 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 204-274 chr7 56631345 56631501 + 2 NA Intergenic Intergenic -93293 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 356-409 chr5 121773884 121774126 + 2 NA Intergenic Intergenic -77877 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 325-183 chr15 79119075 79119384 + 2 NA Intergenic L2a|LINE|L2 -28449 NM_002891 5923 Hs.459035 NM_002891 ENSG00000058335 RASGRF1 CDC25|CDC25L|GNRP|GRF1|GRF55|H-GRF55|PP13187|ras-GRF1 Ras protein specific guanine nucleotide releasing factor 1 protein-coding 264-225 chr2 186824272 186824421 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 24824 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 227-158 chr2 19703811 19704036 + 2 NA Intergenic Intergenic -164931 NR_033875 400946 Hs.289062 NR_033875 ENSG00000228784 LINC00954 - long intergenic non-protein coding RNA 954 ncRNA 266-368 chr6 80550606 80550799 + 2 NA Intergenic Intergenic 444031 NM_183050 594 Hs.156414 NM_000056 ENSG00000083123 BCKDHB BCKDE1B|BCKDH E1-beta|E1B branched chain keto acid dehydrogenase E1 subunit beta protein-coding 255-133 chr15 91554817 91554977 + 2 NA Intergenic Intergenic 91558 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 223-128 chr18 12928210 12928414 + 2 NA Intergenic MIRb|SINE|MIR -19672 NM_031216 81929 Hs.301048 NM_031216 ENSG00000085415 SEH1L SEC13L|SEH1A|SEH1B|Seh1 SEH1 like nucleoporin protein-coding 200-96 chr16 54743086 54743280 + 2 NA Intergenic Intergenic 105050 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 350-185 chr17 71506147 71506377 + 2 NA Intergenic Intergenic -304083 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 456-165 chr2 135519738 135520017 + 2 NA intron (NM_032143, intron 1 of 20) L2a|LINE|L2 10708 NM_001286568 84083 Hs.658422 NM_032143 ENSG00000121988 ZRANB3 4933425L19Rik|AH2 zinc finger RANBP2-type containing 3 protein-coding 358-494 chr8 126958510 126958711 + 2 NA Intergenic L1ME3A|LINE|L1 -54544 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 290-357 chr5 110016485 110016732 + 2 NA Intergenic Intergenic 133426 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 469-85 chr14 59591466 59591840 + 2 NA Intergenic Intergenic -14841 NM_001164399 729665 NM_001164399 ENSG00000151838 CCDC175 C14orf38|c14_5395 coiled-coil domain containing 175 protein-coding 564-27 chr11 4844800 4845260 + 2 NA Intergenic L1MA1|LINE|L1 4178 NM_001004758 119692 Hs.553561 NM_001004758 ENSG00000176922 OR51S1 OR11-24 olfactory receptor family 51 subfamily S member 1 protein-coding 553-242 chr8 137962960 137963345 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 120393 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 433-51 chr11 84452980 84453255 + 2 NA intron (NM_001142699, intron 7 of 27) L2a|LINE|L2 -135778 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 219-334 chr7 52469456 52469580 + 2 NA Intergenic Intergenic -566115 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 428-174 chr3 36370248 36370571 + 2 NA Intergenic L1MDa|LINE|L1 -10078 NM_003149 6769 Hs.56045 NM_003149 ENSG00000144681 STAC STAC1 SH3 and cysteine rich domain protein-coding 431-250 chr6 94519075 94519360 + 2 NA Intergenic Intergenic 800914 NR_152795 643432 Hs.509936 NR_015362 TSG1 - tumor suppressor TSG1 ncRNA 321-60 chr10 54747477 54747658 + 2 NA intron (NM_001354404, intron 4 of 34) intron (NM_001354404, intron 4 of 34) 53664 NM_001142764 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 445-281 chr8 139061864 139062146 + 2 NA Intergenic L1M5|LINE|L1 -147964 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 551-225 chr8 134409820 134410154 + 2 NA Intergenic Intergenic -188084 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 332-241 chr2 15218062 15218325 + 2 NA intron (NR_052013, intron 47 of 50) intron (NR_052013, intron 47 of 50) 343141 NM_015909 51594 Hs.467759 NM_015909 ENSG00000151779 NBAS ILFS2|NAG|SOPH neuroblastoma amplified sequence protein-coding 350-284 chr21 20564781 20565044 + 2 NA Intergenic Intergenic 238196 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 422-83 chr14 66400368 66400754 + 2 NA Intergenic MIR|SINE|MIR -85810 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 334-275 chr2 103547748 103547936 + 2 NA Intergenic Intergenic -563413 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 221-28 chr1 229620643 229620812 + 2 NA intron (NM_001025247, intron 1 of 3) intron (NM_001025247, intron 1 of 3) 5320 NM_014409 27097 Hs.270621 NM_014409 ENSG00000135801 TAF5L PAF65B TATA-box binding protein associated factor 5 like protein-coding 405-188 chr21 20532259 20532591 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 270683 NR_109787 387486 Hs.576551 NR_024090 ENSG00000224924 LINC00320 C21orf131|NCRNA00320|PRED14 long intergenic non-protein coding RNA 320 ncRNA 315-330 chr4 22073583 22073775 + 2 NA Intergenic MER65A|LTR|ERV1 -124928 NM_147182 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 205-114 chr17 32811176 32811306 + 2 NA intron (NM_015194, intron 1 of 21) L2|LINE|L2 65883 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 256-276 chr3 169518358 169518549 + 2 NA intron (NM_001366473, intron 1 of 15) intron (NM_001366473, intron 1 of 15) 70586 NR_134932 105374205 NR_134932 ENSG00000241479 LOC105374205 - uncharacterized LOC105374205 ncRNA 349-87 chr10 121233791 121234094 + 2 NA Intergenic Intergenic 297372 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 315-303 chr3 13156402 13156570 + 2 NA Intergenic L1M4|LINE|L1 -83057 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 719-88 chr9 112676710 112677302 + 2 NA Intergenic L1MB3|LINE|L1 41111 NR_138055 58493 Hs.658575 NM_021218 ENSG00000148153 INIP C9orf80|HSPC043|MISE|SOSSC|SSBIP1|hSSBIP1 INTS3 and NABP interacting protein protein-coding 501-231 chr6 152055996 152056272 + 2 NA intron (NM_001122741, intron 6 of 8) intron (NM_001122741, intron 6 of 8) 112153 NM_001347702 23345 Hs.12967 NM_015293 ENSG00000131018 SYNE1 8B|ARCA1|C6orf98|CPG2|EDMD4|KASH1|MYNE1|Nesp1|SCAR8|dJ45H2.2 spectrin repeat containing nuclear envelope protein 1 protein-coding 215-146 chr2 61062673 61062791 + 2 NA Intergenic Intergenic -3138 NM_001330434 84542 Hs.468653 NM_032506 ENSG00000162929 KIAA1841 - KIAA1841 protein-coding 310-194 chr18 5060434 5060722 + 2 NA Intergenic Intergenic -20604 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 325-288 chr2 166596186 166596482 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR -109363 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 476-113 chr17 72987248 72987604 + 2 NA intron (NM_001352692, intron 4 of 9) intron (NM_001352692, intron 4 of 9) 105262 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 294-514 chrX 56096598 56096812 + 2 NA intron (NM_001324104, intron 2 of 6) L1MCa|LINE|L1 -135651 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 616-175 chr8 136248030 136248565 + 2 NA Intergenic L1MB7|LINE|L1 -282501 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 320-388 chr4 60785227 60785538 + 2 NA Intergenic Intergenic -137237 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 358-509 chr9 23170668 23170902 + 2 NA Intergenic MER57D|LTR|ERV1 501614 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 328-509 chr6 103889479 103889664 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 969975 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 284-427 chr8 138356730 138356922 + 2 NA intron (NM_015912, intron 2 of 19) intron (NM_015912, intron 2 of 19) 140435 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 476-100 chr16 8305083 8305483 + 2 NA Intergenic Intergenic 284555 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 371-420 chr9 126133777 126134091 + 2 NA Intergenic L1M5|LINE|L1 141981 NR_121584 101929116 Hs.382124 NR_121584 ENSG00000228392 LOC101929116 - uncharacterized LOC101929116 ncRNA 370-64 chr10 106602277 106602507 + 2 NA intron (NM_001206569, intron 23 of 25) intron (NM_001206569, intron 23 of 25) 462227 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 306-347 chr4 34071408 34071686 + 2 NA Intergenic Intergenic -31654 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 374-110 chr15 58163950 58164275 + 2 NA intron (NM_020980, intron 1 of 5) intron (NM_020980, intron 1 of 5) 25731 NM_020980 366 Hs.104624 NM_020980 ENSG00000103569 AQP9 AQP-9|HsT17287|SSC1|T17287 aquaporin 9 protein-coding 718-10 chr1 208997840 208998381 + 2 NA Intergenic Intergenic 25656 NR_146915 105372894 Hs.98665 NR_146915 ENSG00000236950 LINC01774 - long intergenic non-protein coding RNA 1774 ncRNA 364-164 chr17 14815555 14815793 + 2 NA Intergenic L1M5|LINE|L1 -199131 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 378-284 chr3 81835805 81836030 + 2 NA Intergenic Intergenic -74272 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 172-117 chr6 150170887 150170986 + 2 NA intron (NM_030949, intron 1 of 3) L1MC1|LINE|L1 27892 NM_030949 81706 Hs.486798 NM_030949 ENSG00000198729 PPP1R14C CPI17-like|KEPI|NY-BR-81 protein phosphatase 1 regulatory inhibitor subunit 14C protein-coding 651-50 chr17 52886639 52887166 + 2 NA intron (NR_146899, intron 1 of 2) intron (NR_146899, intron 1 of 2) 24781 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 232-369 chr8 56625025 56625191 + 2 NA Intergenic LTR8|LTR|ERV1 -65285 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 267-267 chr3 139403877 139404025 + 2 NA intron (NR_121609, intron 1 of 4) L1PB2|LINE|L1 14148 NR_121608 100507291 Hs.97661 NR_121608 ENSG00000248932 LOC100507291 - uncharacterized LOC100507291 ncRNA 125-35 chr3 26665299 26665397 + 2 NA intron (NM_001317810, intron 2 of 2) intron (NM_001317810, intron 2 of 2) -29209 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 247-105 chr13 82723732 82723891 + 2 NA Intergenic MIR|SINE|MIR 1158582 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 346-46 chr10 44910120 44910456 + 2 NA intron (NR_033842, intron 2 of 7) MER47A|DNA|TcMar-Tigger -1028 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 191-33 chr11 98308687 98308830 + 2 NA Intergenic MLT1G1-int|LTR|ERVL-MaLR -712191 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 480-78 chr14 61370991 61371409 + 2 NA intron (NM_006255, intron 1 of 13) L1MC3|LINE|L1 49757 NM_006255 5583 Hs.333907 NM_006255 ENSG00000027075 PRKCH PKC-L|PKCL|PRKCL|nPKC-eta protein kinase C eta protein-coding 297-73 chr11 43617192 43617461 + 2 NA Intergenic Intergenic 35932 NR_029697 406918 NR_029697 ENSG00000199077 MIR129-2 MIR-129b|MIRN129-2|mir-129-2 microRNA 129-2 ncRNA 131-29 chr15 76788740 76788841 + 2 NA intron (NM_001353011, intron 9 of 32) L1MC5a|LINE|L1 73154 NM_001145923 49855 Hs.458986 NM_020843 ENSG00000140386 SCAPER IDDRP|MSTP063|ZNF291|Zfp291 S-phase cyclin A associated protein in the ER protein-coding 382-408 chr8 84924150 84924481 + 2 NA Intergenic Intergenic -182923 NM_001349639 85444 Hs.193115 NM_033402 ENSG00000133739 LRRCC1 CLERC|CLERK|SAP2|VFL1 leucine rich repeat and coiled-coil centrosomal protein 1 protein-coding 336-526 chr7 97619722 97619902 + 2 NA Intergenic (A)n|Simple_repeat|Simple_repeat -112274 NM_013996 6863 Hs.2563 NM_003182 ENSG00000006128 TAC1 Hs.2563|NK2|NKNA|NPK|TAC2 tachykinin precursor 1 protein-coding 255-223 chr2 210158730 210158936 + 2 NA intron (NM_001307976, intron 1 of 13) intron (NM_001307976, intron 1 of 13) 12576 NM_001307976 151050 Hs.282260 NM_152519 ENSG00000144445 KANSL1L C2orf67|MSL1v2 KAT8 regulatory NSL complex subunit 1 like protein-coding 442-130 chr2 56065911 56066236 + 2 NA Intergenic L1MA5|LINE|L1 -18747 NR_126406 104355290 Hs.580331 NR_126406 MIR217HG MIR216AHG|MIR216BHG MIR217 host gene ncRNA 279-134 chr17 33954819 33955007 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 201893 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 453-260 chr7 78504931 78505290 + 2 NA intron (NM_001301128, intron 4 of 20) intron (NM_001301128, intron 4 of 20) 157868 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 121-23 chr2 11149751 11149840 + 2 NA 3' UTR (NM_001371320, exon 4 of 4) 3' UTR (NM_001371320, exon 4 of 4) -5577 NM_001282710 130814 Hs.274415 NM_152391 ENSG00000162976 SLC66A3 C2orf22|PQLC3 solute carrier family 66 member 3 protein-coding 354-154 chr15 68247234 68247487 + 2 NA Intergenic L1MA4|LINE|L1 -17632 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 149-61 chr22 30057896 30058019 + 2 NA intron (NR_110541, intron 1 of 4) AluJb|SINE|Alu 22300 NR_110541 101929664 Hs.592197 NR_110541 HORMAD2-AS1 MTMR3-AS1 HORMAD2 and MTMR3 antisense RNA 1 ncRNA 189-139 chr4 38538075 38538234 + 2 NA Intergenic MIRb|SINE|MIR -14974 NR_110951 101928776 Hs.586147 NR_110951 ENSG00000249534 LINC01258 - long intergenic non-protein coding RNA 1258 ncRNA 132-9 chr10 28459092 28459175 + 2 NA intron (NR_134496, intron 1 of 2) L1MB1|LINE|L1 36680 NR_134496 105376468 Hs.522525 NR_134496 ENSG00000237128 LINC02652 - long intergenic non-protein coding RNA 2652 ncRNA 279-211 chr2 219994606 219994813 + 2 NA Intergenic Intergenic -88144 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 233-41 chr10 58653585 58653773 + 2 NA intron (NM_001080512, intron 2 of 20) Charlie13a|DNA|hAT-Charlie -61336 NR_027508 728640 Hs.729209 NR_027508 FAM133CP - family with sequence similarity 133, member A pseudogene pseudo 251-324 chr5 174238372 174238559 + 2 NA Intergenic Intergenic -97889 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 382-43 chr10 83536024 83536347 + 2 NA Intergenic L1ME2|LINE|L1 140904 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 291-394 chr6 146198743 146198944 + 2 NA intron (NM_001278065, intron 3 of 9) ERV3-16A3_I-int|LTR|ERVL 169645 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 568-75 chr16 70047373 70047858 + 2 NA intron (NR_003610, intron 1 of 25) intron (NR_003610, intron 1 of 25) 17269 NR_036054 100302243 NR_036054 ENSG00000238728 MIR1972-1 MIR1972|hsa-mir-1972|hsa-mir-1972-1 microRNA 1972-1 ncRNA 970-2 chr10 23950209 23951092 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 255923 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 315-300 chr22 33867693 33867918 + 2 NA intron (NM_001362949, intron 1 of 15) MIRb|SINE|MIR 52623 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 354-153 chr15 59611345 59611623 + 2 NA promoter-TSS (NM_004751) promoter-TSS (NM_004751) -299 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 258-83 chr12 28896699 28896851 + 2 NA Intergenic Intergenic -252503 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 182-81 chr2 8104889 8105043 + 2 NA intron (NR_034135, intron 7 of 8) intron (NR_034135, intron 7 of 8) -128152 NR_015405 339788 Hs.46864 NR_015405 ENSG00000235665 LINC00298 - long intergenic non-protein coding RNA 298 ncRNA 432-213 chr5 6143944 6144205 + 2 NA Intergenic Intergenic 193218 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 450-203 chr3 119197151 119197465 + 2 NA intron (NM_006952, intron 6 of 7) X6A_LINE|LINE|CR1 23710 NM_006952 7348 Hs.271580 NM_006952 ENSG00000114638 UPK1B TSPAN20|UPIB|UPK1 uroplakin 1B protein-coding 488-138 chr2 79302649 79302987 + 2 NA Intergenic MIR|SINE|MIR -143065 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 339-204 chr16 79027586 79027919 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 572985 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 226-81 chr13 76293113 76293297 + 2 NA Intergenic Intergenic -358073 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 349-375 chr4 86023167 86023414 + 2 NA intron (NM_001363657, intron 13 of 13) L1MB8|LINE|L1 93274 NM_031305 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 287-241 chr3 7262124 7262306 + 2 NA intron (NM_000844, intron 2 of 9) L1PREC2|LINE|L1 273069 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 339-495 chr6 84325668 84325906 + 2 NA Intergenic Intergenic -98144 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 307-530 chrX 62656349 62656540 + 2 NA Intergenic ALR/Alpha|Satellite|centr 694888 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 515-58 chr13 32858489 32858839 + 2 NA intron (NR_047020, intron 4 of 4) intron (NR_047020, intron 4 of 4) 52988 NR_047020 100874167 Hs.406290 NR_047020 LINC00423 - long intergenic non-protein coding RNA 423 ncRNA 322-516 chr8 51252181 51252486 + 2 NA Intergenic Intergenic 557112 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 346-332 chr3 177313849 177314161 + 2 NA intron (NR_047465, intron 1 of 1) AluSg|SINE|Alu 19563 NR_047465 100820709 Hs.518409 NR_047465 ENSG00000203645 LINC00501 - long intergenic non-protein coding RNA 501 ncRNA 354-354 chr5 6310924 6311158 + 2 NA non-coding (NR_028351, exon 2 of 2) non-coding (NR_028351, exon 2 of 2) 26251 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 548-30 chr11 5438593 5438987 + 2 NA intron (NM_001005567, intron 1 of 4) intron (NM_001005567, intron 1 of 4) 2763 NM_001005288 390063 Hs.553732 NM_001005288 ENSG00000167359 OR51I1 - olfactory receptor family 51 subfamily I member 1 protein-coding 297-61 chr10 129628571 129628826 + 2 NA intron (NM_002412, intron 2 of 4) intron (NM_002412, intron 2 of 4) 161457 NM_002412 4255 Hs.501522 NM_002412 ENSG00000170430 MGMT - O-6-methylguanine-DNA methyltransferase protein-coding 400-151 chr2 24447503 24447845 + 2 NA Intergenic L1MD2|LINE|L1 -43580 NM_001362950 8648 Hs.596314 NM_003743 ENSG00000084676 NCOA1 F-SRC-1|KAT13A|RIP160|SRC1|bHLHe42|bHLHe74 nuclear receptor coactivator 1 protein-coding 251-401 chr8 119270205 119270396 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -23443 NR_149111 105375726 Hs.666095 NR_149111 MAL2-AS1 - MAL2 antisense RNA 1 ncRNA 302-418 chr7 89585756 89585994 + 2 NA Intergenic Intergenic -533525 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 379-171 chr2 119851759 119851984 + 2 NA intron (NM_002830, intron 2 of 26) MER50B|LTR|ERV1 91949 NM_002830 5775 Hs.469809 NM_002830 ENSG00000088179 PTPN4 MEG|PTPMEG|PTPMEG1 protein tyrosine phosphatase non-receptor type 4 protein-coding 514-99 chr15 57837177 57837508 + 2 NA Intergenic Intergenic 130628 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 454-339 chr9 84958778 84959168 + 2 NA intron (NM_001018064, intron 16 of 17) intron (NM_001018064, intron 16 of 17) 253072 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 205-79 chr14 43024643 43024818 + 2 NA Intergenic MIR|SINE|MIR 1417874 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 184-62 chr14 86265877 86265994 + 2 NA Intergenic L1PA10|LINE|L1 331257 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 343-339 chr3 66215053 66215291 + 2 NA intron (NM_173471, intron 1 of 10) intron (NM_173471, intron 1 of 10) -5570 NM_001350993 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 280-132 chr14 90589541 90589744 + 2 NA intron (NM_001320421, intron 19 of 20) L1ME4b|LINE|L1 -52987 NR_110134 101928909 Hs.662545 NR_110134 ENSG00000259163 LOC101928909 - uncharacterized LOC101928909 ncRNA 325-268 chr2 80171106 80171425 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 133487 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 380-4 chr1 42301411 42301680 + 2 NA intron (NM_001198850, intron 2 of 12) L1PA15-16|LINE|L1 33410 NM_001198851 22887 Hs.26023 NM_014947 ENSG00000198815 FOXJ3 - forkhead box J3 protein-coding 308-480 chr8 19702781 19702982 + 2 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) -20120 NR_024040 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 521-75 chr13 46223736 46224177 + 2 NA intron (NM_001282460, intron 2 of 9) L1M2|LINE|L1 12028 NM_001282460 220416 Hs.267765 NM_001024609 ENSG00000173988 LRRC63 - leucine rich repeat containing 63 protein-coding 243-374 chr5 163377305 163377458 + 2 NA Intergenic Intergenic -60190 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 375-454 chr9 97410032 97410384 + 2 NA Intergenic Intergenic -1888 NM_014290 23424 Hs.193842 NM_014290 ENSG00000196116 TDRD7 CATC4|PCTAIRE2BP|TRAP tudor domain containing 7 protein-coding 472-11 chr1 79275604 79275920 + 2 NA Intergenic L1PA14|LINE|L1 -269032 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 607-9 chr1 102353604 102353982 + 2 NA Intergenic Intergenic -356559 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 396-311 chr6 67473809 67474097 + 2 NA Intergenic L2|LINE|L2 -581398 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 514-210 chr4 120492893 120493248 + 2 NA Intergenic L1MEf|LINE|L1 -426222 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 459-190 chr3 88078852 88079137 + 2 NA intron (NM_001366093, intron 1 of 7) L3|LINE|CR1 19739 NM_001366097 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 234-337 chr6 46276085 46276311 + 2 NA promoter-TSS (NR_125838) promoter-TSS (NR_125838) -126 NR_125838 101926915 Hs.575377 NR_125838 LOC101926915 - uncharacterized LOC101926915 ncRNA 299-473 chr8 137260361 137260655 + 2 NA Intergenic Intergenic 153080 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 303-501 chrX 5684540 5684789 + 2 NA Intergenic L1MA9|LINE|L1 -541694 NR_136577 105373156 Hs.21107 NR_136577 LOC105373156 - uncharacterized LOC105373156 ncRNA 433-120 chr18 75602056 75602326 + 2 NA Intergenic L1MA6|LINE|L1 110212 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 284-145 chr16 7368682 7368949 + 2 NA intron (NM_145893, intron 1 of 13) intron (NM_145893, intron 1 of 13) 35970 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 207-77 chr14 46011254 46011405 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -52830 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 781-29 chr19 39019775 39020364 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 12480 NM_178820 126433 Hs.187461 NM_178820 ENSG00000161243 FBXO27 FBG5|Fbx27 F-box protein 27 protein-coding 289-301 chr3 76903091 76903320 + 2 NA Intergenic L1MD|LINE|L1 -136894 NM_001290040 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 312-507 chr8 30858827 30858983 + 2 NA intron (NR_146525, intron 5 of 6) intron (NR_146525, intron 5 of 6) 29801 NR_146525 56154 Hs.458316 NM_001350162 ENSG00000133863 TEX15 CT42|SPGF25 testis expressed 15, meiosis and synapsis associated protein-coding 310-428 chr5 136004636 136004805 + 2 NA Intergenic MER68B|LTR|ERVL -24268 NM_000358 7045 Hs.369397 NM_000358 ENSG00000120708 TGFBI BIGH3|CDB1|CDG2|CDGG1|CSD|CSD1|CSD2|CSD3|EBMD|LCD1 transforming growth factor beta induced protein-coding 197-124 chr21 30725484 30725647 + 2 NA Intergenic MLT2D|LTR|ERVL -6788 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 730-19 chr16 24195366 24195919 + 2 NA intron (NM_212535, intron 16 of 16) intron (NM_212535, intron 16 of 16) -7474 NR_106996 102466247 NR_106996 ENSG00000274466 MIR1273H hsa-mir-1273h microRNA 1273h ncRNA 194-189 chr6 129800666 129800782 + 2 NA Intergenic L1MC4|LINE|L1 60591 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 282-86 chr12 7914605 7914839 + 2 NA Intergenic AluJb|SINE|Alu 21465 NM_006931 6515 Hs.419240 NM_006931 ENSG00000059804 SLC2A3 GLUT3 solute carrier family 2 member 3 protein-coding 201-56 chr12 19938774 19938938 + 2 NA Intergenic Intergenic -75829 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 639-97 chr5 92471978 92472605 + 2 NA Intergenic Intergenic -1088974 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 240-291 chr3 107436439 107436632 + 2 NA intron (NR_110039, intron 1 of 2) intron (NR_110039, intron 1 of 2) 5605 NR_110039 101929607 Hs.252565 NR_110039 ENSG00000273125 LINC01990 - long intergenic non-protein coding RNA 1990 ncRNA 805-40 chr6 1452900 1453446 + 2 NA Intergenic LTR49|LTR|ERV1 -62762 NR_106778 102466720 NR_106778 ENSG00000275859 MIR6720 hsa-mir-6720|mir-6720 microRNA 6720 ncRNA 256-39 chr10 41904307 41904485 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 463649 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 532-261 chr8 26232807 26233328 + 2 NA Intergenic L1MA4A|LINE|L1 -58441 NM_002717 5520 Hs.146339 NM_002717 ENSG00000221914 PPP2R2A B55A|B55ALPHA|PR52A|PR55A|PR55alpha protein phosphatase 2 regulatory subunit Balpha protein-coding 356-64 chr10 93784462 93784717 + 2 NA intron (NM_005097, intron 4 of 7) intron (NM_005097, intron 4 of 7) 26653 NM_005097 9211 Hs.533670 NM_005097 ENSG00000108231 LGI1 ADLTE|ADPAEF|ADPEAF|EPITEMPIN|EPT|ETL1|IB1099 leucine rich glioma inactivated 1 protein-coding 378-228 chr2 68855281 68855610 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 15952 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 280-376 chr7 27403330 27403514 + 2 NA Intergenic AluJr|SINE|Alu -156193 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 264-186 chr19 37794950 37795189 + 2 NA Intergenic Intergenic -15479 NM_152360 126231 Hs.531262 NM_152360 ENSG00000189144 ZNF573 - zinc finger protein 573 protein-coding 354-129 chr14 43134591 43134842 + 2 NA Intergenic Intergenic 1372567 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 680-84 chr3 111345939 111346349 + 2 NA Intergenic MER41B|LTR|ERV1 -196053 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 202-166 chr3 82090417 82090591 + 2 NA intron (NR_147146, intron 1 of 8) L1M5|LINE|L1 104362 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 363-250 chr20 12074241 12074571 + 2 NA Intergenic L1MB4|LINE|L1 156513 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 310-483 chr7 64544231 64544535 + 2 NA exon (NM_178558, exon 2 of 4) exon (NM_178558, exon 2 of 4) 18688 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 402-339 chr8 78837081 78837446 + 2 NA promoter-TSS (NR_157588) promoter-TSS (NR_157588) -266 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 305-273 chr2 146657287 146657483 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 70328 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 138-47 chr21 17393470 17393563 + 2 NA Intergenic Intergenic -45374 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 345-492 chr7 38491450 38491683 + 2 NA intron (NM_001635, intron 4 of 20) intron (NM_001635, intron 4 of 20) 139807 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 267-313 chr5 8539769 8539952 + 2 NA Intergenic Intergenic 78935 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 658-70 chr2 203901313 203901920 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 33845 NM_001037631 1493 Hs.247824 NM_005214 ENSG00000163599 CTLA4 ALPS5|CD|CD152|CELIAC3|CTLA-4|GRD4|GSE|IDDM12 cytotoxic T-lymphocyte associated protein 4 protein-coding 289-502 chrX 78486296 78486534 + 2 NA Intergenic Intergenic -158724 NM_001282186 10800 Hs.733809 NM_006639 ENSG00000173198 CYSLTR1 CYSLT1|CYSLT1R|CYSLTR|HMTMF81 cysteinyl leukotriene receptor 1 protein-coding 471-234 chr6 120004588 120005003 + 2 NA Intergenic Intergenic -10384 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 293-331 chr5 16248246 16248441 + 2 NA Intergenic Intergenic 68102 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 345-225 chr18 66828151 66828450 + 2 NA Intergenic Intergenic -224210 NM_001271028 28513 Hs.42771 NM_021153 ENSG00000071991 CDH19 CDH7|CDH7L2 cadherin 19 protein-coding 359-200 chr18 60095532 60095849 + 2 NA Intergenic Intergenic 195694 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 568-206 chr9 97275955 97276243 + 2 NA intron (NR_036529, intron 4 of 44) intron (NR_036529, intron 4 of 44) -31238 NM_001348010 100499483 Hs.435629 NM_020893 ENSG00000197816 CCDC180 C9orf174 coiled-coil domain containing 180 protein-coding 420-60 chr12 16290402 16290670 + 2 NA Intergenic Intergenic -12851 NM_001170798 729025 Hs.692712 NM_001170798 ENSG00000188991 SLC15A5 - solute carrier family 15 member 5 protein-coding 296-83 chr11 127197436 127197646 + 2 NA Intergenic MLT2C1|LTR|ERVL -73529 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 209-255 chr5 92895514 92895673 + 2 NA Intergenic Intergenic 675750 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 508-91 chr19 32342151 32342564 + 2 NA Intergenic Intergenic -3253 NM_001136156 22847 Hs.205392 NM_014910 ENSG00000168813 ZNF507 - zinc finger protein 507 protein-coding 574-181 chr8 83720260 83720721 + 2 NA Intergenic L1PA12|LINE|L1 316732 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 434-49 chr11 40087953 40088223 + 2 NA Intergenic Intergenic 205042 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 549-130 chr20 60830305 60830702 + 2 NA Intergenic L1MD3|LINE|L1 -248561 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 366-361 chr5 175296384 175296628 + 2 NA Intergenic L1PA15|LINE|L1 147676 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 234-54 chr11 4909450 4909646 + 2 NA Intergenic Intergenic 2178 NM_001004749 119687 Hs.553560 NM_001004749 ENSG00000176895 OR51A7 OR11-27 olfactory receptor family 51 subfamily A member 7 protein-coding 304-372 chr4 31703436 31703625 + 2 NA Intergenic Intergenic 196986 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 415-265 chr7 127861518 127861878 + 2 NA intron (NM_014390, intron 12 of 23) AluSx1|SINE|Alu -135811 NR_027330 27099 Hs.657377 NM_014411 ENSG00000279078 SND1-IT1 C7orf54|NAG8|NSG-X SND1 intronic transcript 1 ncRNA 172-25 chr11 38781230 38781398 + 2 NA Intergenic Intergenic 132456 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 250-57 chr10 121330408 121330585 + 2 NA Intergenic Intergenic 200818 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 517-49 chr11 98185512 98185867 + 2 NA Intergenic LTR12C|LTR|ERV1 -835260 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 595-3 chr1 60306985 60307486 + 2 NA Intergenic L1MEg|LINE|L1 -233465 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 625-92 chr5 169738610 169739088 + 2 NA intron (NR_156756, intron 22 of 52) intron (NR_156756, intron 22 of 52) 101574 NR_156756 1794 Hs.586174 NM_004946 ENSG00000134516 DOCK2 IMD40 dedicator of cytokinesis 2 protein-coding 481-152 chr2 118646575 118646995 + 2 NA Intergenic Intergenic -43819 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 219-314 chr6 73995292 73995508 + 2 NA Intergenic Intergenic -74051 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 393-298 chr6 523376 523572 + 2 NA intron (NM_018303, intron 23 of 27) intron (NM_018303, intron 23 of 27) 131722 NR_046000 3662 Hs.401013 NM_002460 ENSG00000137265 IRF4 LSIRF|MUM1|NF-EM5|SHEP8 interferon regulatory factor 4 protein-coding 249-224 chr2 184676550 184676763 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 78127 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 281-274 chr22 32487253 32487495 + 2 NA intron (NM_001257990, intron 4 of 8) intron (NM_001257990, intron 4 of 8) 12137 NM_001033024 25793 Hs.5912 NM_012179 ENSG00000100225 FBXO7 FBX|FBX07|FBX7|PARK15|PKPS F-box protein 7 protein-coding 749-15 chr10 41742963 41743593 + 2 NA Intergenic ALR/Alpha|Satellite|centr 624767 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 189-88 chr2 52403980 52404123 + 2 NA intron (NR_135237, intron 10 of 10) intron (NR_135237, intron 10 of 10) 33403 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 181-22 chr10 83183504 83183641 + 2 NA Intergenic Intergenic 493517 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 424-34 chr10 115468026 115468279 + 2 NA intron (NM_207303, intron 23 of 28) intron (NM_207303, intron 23 of 28) 374787 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 275-132 chr16 64650177 64650443 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 471753 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 515-26 chr10 90350250 90350591 + 2 NA Intergenic Intergenic 190385 NR_110657 101926942 Hs.382666 NR_110657 ENSG00000236373 LINC02653 - long intergenic non-protein coding RNA 2653 ncRNA 326-563 chr8 140136493 140136672 + 2 NA intron (NM_001160372, intron 17 of 22) AluSx1|SINE|Alu -36047 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 259-50 chr10 62184470 62184697 + 2 NA Intergenic L3|LINE|CR1 84261 NM_145307 219790 Hs.58559 NM_145307 ENSG00000182010 RTKN2 PLEKHK1|bA531F24.1 rhotekin 2 protein-coding 733-86 chr9 103530326 103530919 + 2 NA Intergenic L1MA7|LINE|L1 -205589 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 325-92 chr11 4929241 4929443 + 2 NA Intergenic BLACKJACK|DNA|hAT-Blackjack -5003 NM_001005237 79324 Hs.554541 NM_001005237 ENSG00000278870 OR51G1 OR11-29|OR51G3P olfactory receptor family 51 subfamily G member 1 (gene/pseudogene) protein-coding 305-172 chr15 96137907 96138192 + 2 NA intron (NR_125738, intron 3 of 4) AluJb|SINE|Alu -10208 NR_158193 105369212 NR_158193 LOC105369212 - uncharacterized LOC105369212 ncRNA 282-436 chr7 107105864 107106096 + 2 NA intron (NM_002736, intron 2 of 10) MER66-int|LTR|ERV1 61275 NM_002736 5577 Hs.433068 NM_002736 ENSG00000005249 PRKAR2B PRKAR2|RII-BETA protein kinase cAMP-dependent type II regulatory subunit beta protein-coding 353-18 chr1 97679844 97680126 + 2 NA intron (NM_000110, intron 7 of 22) ERV3-16A3_I-int|LTR|ERVL -116936 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 283-425 chr7 84199227 84199492 + 2 NA Intergenic Intergenic -4570 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 316-188 chr15 100130380 100130620 + 2 NA intron (NM_139057, intron 12 of 21) intron (NM_139057, intron 12 of 21) 211475 NM_139057 170691 Hs.513200 NM_139057 ENSG00000140470 ADAMTS17 WMS4 ADAM metallopeptidase with thrombospondin type 1 motif 17 protein-coding 245-47 chr10 57733367 57733551 + 2 NA Intergenic Intergenic -428900 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 527-52 chr11 116216572 116216951 + 2 NA Intergenic MIR|SINE|MIR -422661 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 235-16 chr1 114840908 114841120 + 2 NA Intergenic L3b|LINE|CR1 -13789 NM_001282542 6847 Hs.112743 NM_003176 ENSG00000198765 SYCP1 CT8|HOM-TES-14|SCP-1|SCP1 synaptonemal complex protein 1 protein-coding 219-332 chr7 50934792 50934945 + 2 NA Intergenic L1MEc|LINE|L1 -141415 NM_001371008 226-164 chr2 79296078 79296294 + 2 NA Intergenic Intergenic -136433 NM_138937 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 309-166 chr15 24652250 24652420 + 2 NA Intergenic Intergenic -23059 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 298-474 chr8 123078699 123078981 + 2 NA intron (NM_001363156, intron 2 of 19) L1MC4|LINE|L1 5591 NM_001363149 93594 Hs.492716 NM_145647 ENSG00000156787 TBC1D31 Gm85|WDR67 TBC1 domain family member 31 protein-coding 208-244 chr7 32446960 32447117 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 11456 NR_038454 100130673 Hs.609282 NR_038454 LOC100130673 - phosphoribosyl pyrophosphate synthetase 2 pseudogene pseudo 144-93 chr6 99294060 99294180 + 2 NA intron (NR_144463, intron 4 of 5) intron (NR_144463, intron 4 of 5) 55554 NM_032511 84553 Hs.573245 NM_032511 ENSG00000146267 FAXC C6orf168|dJ273F20 failed axon connections homolog, metaxin like GST domain containing protein-coding 379-114 chr16 55212412 55212637 + 2 NA Intergenic MER21B|LTR|ERVL -112035 NM_024335 79190 Hs.369907 NM_024335 ENSG00000159387 IRX6 IRX-3|IRX7|IRXB3 iroquois homeobox 6 protein-coding 484-100 chr18 7227636 7228050 + 2 NA Intergenic Intergenic -3261 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 253-121 chr13 88925784 88925950 + 2 NA Intergenic Intergenic 299014 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 223-290 chr5 141140397 141140569 + 2 NA Intergenic MER90a|LTR|ERV1 5277 NM_015669 26167 Hs.119693 NM_015669 ENSG00000113209 PCDHB5 PCDH-BETA5 protocadherin beta 5 protein-coding 983-19 chr7 21143184 21143839 + 2 NA Intergenic Intergenic -284572 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 276-262 chr20 19036906 19037108 + 2 NA Intergenic Intergenic -175635 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 192-61 chr14 36081676 36081839 + 2 NA intron (NR_073454, intron 1 of 2) L1MEg|LINE|L1 11330 NR_073454 101101773 Hs.640678 NR_073454 ENSG00000257585 LINC00609 - long intergenic non-protein coding RNA 609 ncRNA 306-35 chr1 177174394 177174568 + 2 NA intron (NM_021165, intron 1 of 7) intron (NM_021165, intron 1 of 7) 3523 NM_021165 57795 Hs.495918 NM_021165 ENSG00000198797 BRINP2 DBCCR1L2|FAM5B BMP/retinoic acid inducible neural specific 2 protein-coding 202-43 chr11 85443988 85444139 + 2 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 183207 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 149-39 chr16 82824726 82824833 + 2 NA non-coding (NR_110938, exon 2 of 3) non-coding (NR_110938, exon 2 of 3) 51460 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 340-572 chr9 109547706 109548018 + 2 NA Intergenic L1MEf|LINE|L1 -36317 NR_037493 100500898 NR_037493 ENSG00000263861 MIR3927 - microRNA 3927 ncRNA 273-359 chr5 60989279 60989472 + 2 NA intron (NM_174889, intron 1 of 3) L1PA15|LINE|L1 44170 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 327-294 chr20 41850125 41850346 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -231858 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 315-351 chr4 141479776 141479972 + 2 NA Intergenic L1MA4|LINE|L1 -147257 NR_121625 100507639 Hs.535010 NR_121625 LINC02432 - long intergenic non-protein coding RNA 2432 ncRNA 413-323 chr9 82126777 82127028 + 2 NA Intergenic L1MC1|LINE|L1 138130 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 478-77 chr14 53676699 53677005 + 2 NA Intergenic AluSc|SINE|Alu 271632 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 352-115 chr12 107254239 107254424 + 2 NA Intergenic Intergenic -64103 NM_001347943 121551 Hs.271272 NM_152322 ENSG00000151136 BTBD11 ABTB2B BTB domain containing 11 protein-coding 298-205 chr2 35225250 35225413 + 2 NA Intergenic L2|LINE|L2 -246074 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 409-268 chr6 145712774 145713011 + 2 NA intron (NM_001360064, intron 1 of 3) HSMAR2|DNA|TcMar-Mariner -21977 NR_038246 100507557 Hs.124537 NR_038244 ENSG00000235652 LOC100507557 - uncharacterized LOC100507557 ncRNA 240-113 chr12 100921767 100921930 + 2 NA intron (NM_178826, intron 2 of 26) intron (NM_178826, intron 2 of 26) 20202 NM_001286616 121601 Hs.58785 NM_178826 ENSG00000151572 ANO4 TMEM16D anoctamin 4 protein-coding 277-138 chr16 52697442 52697604 + 2 NA Intergenic MER97a|DNA|hAT-Tip100 -90548 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 678-26 chr13 104548276 104548779 + 2 NA Intergenic Intergenic -917340 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 193-2 chr1 28864301 28864399 + 2 NA 3' UTR (NM_000911, exon 3 of 3) 3' UTR (NM_000911, exon 3 of 3) -22741 NM_001166005 2035 Hs.175437 NM_004437 ENSG00000159023 EPB41 4.1R|EL1|HE erythrocyte membrane protein band 4.1 protein-coding 177-147 chr7 13155119 13155225 + 2 NA Intergenic Intergenic 467539 NM_005738 10124 Hs.245540 NM_005738 ENSG00000122644 ARL4A ARL4 ADP ribosylation factor like GTPase 4A protein-coding 191-145 chr4 33933748 33933911 + 2 NA intron (NR_125902, intron 4 of 4) intron (NR_125902, intron 4 of 4) 106064 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 427-56 chr12 92376874 92377230 + 2 NA Intergenic Intergenic -44479 NR_027933 574028 Hs.730377 NM_001025233 ENSG00000257127 CLLU1 - chronic lymphocytic leukemia up-regulated 1 ncRNA 419-241 chr5 162919939 162920212 + 2 NA Intergenic L1MB1|LINE|L1 -517496 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 374-340 chr6 74694028 74694320 + 2 NA Intergenic Intergenic 434608 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 516-277 chrX 57466977 57467338 + 2 NA intron (NR_148564, intron 11 of 11) L1P1|LINE|L1 -124679 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 457-100 chr19 12030684 12030954 + 2 NA intron (NM_001308355, intron 1 of 4) AluJb|SINE|Alu 4922 NM_001308346 163059 Hs.667776 NM_152602 ENSG00000197647 ZNF433 - zinc finger protein 433 protein-coding 333-402 chr4 90248244 90248521 + 2 NA intron (NM_207491, intron 1 of 7) intron (NM_207491, intron 1 of 7) 13351 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 398-112 chr14 87913106 87913386 + 2 NA Intergenic L1PA13|LINE|L1 79936 NM_000153 2581 Hs.513439 NM_000153 ENSG00000054983 GALC - galactosylceramidase protein-coding 317-157 chr14 81072505 81072801 + 2 NA intron (NM_001142626, intron 3 of 8) L1MEg|LINE|L1 117032 NM_000369 7253 Hs.160411 NM_000369 ENSG00000165409 TSHR CHNG1|LGR3|hTSHR-I thyroid stimulating hormone receptor protein-coding 289-428 chr7 7065036 7065259 + 2 NA Intergenic SATR1|Satellite|Satellite 1898 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 291-268 chr21 20247791 20248077 + 2 NA Intergenic Intergenic 10751 NR_151724 111216285 Hs.561034 NR_151724 LINC02573 - long intergenic non-protein coding RNA 2573 ncRNA 406-271 chr7 34031612 34031887 + 2 NA intron (NM_133468, intron 7 of 15) MIRb|SINE|MIR 126210 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 259-191 chr2 51849284 51849438 + 2 NA intron (NR_135237, intron 6 of 10) LTR16E2|LTR|ERVL -521287 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 305-108 chr12 4774045 4774274 + 2 NA Intergenic L1MC4a|LINE|L1 -35017 NM_002235 3742 Hs.306190 NM_002235 ENSG00000130035 KCNA6 HBK2|KV1.6|PPP1R96 potassium voltage-gated channel subfamily A member 6 protein-coding 286-171 chr18 7340593 7340783 + 2 NA Intergenic AluSx4|SINE|Alu 109584 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 379-330 chr8 15319957 15320218 + 2 NA Intergenic HERVL74-int|LTR|ERVL -81656 NM_001322880 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 328-533 chr7 51559086 51559405 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -165989 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 157-18 chr10 41882605 41882714 + 2 NA Intergenic (ATGGA)n|Simple_repeat|Simple_repeat 485386 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 257-23 chr1 176467087 176467246 + 2 NA intron (NM_021936, intron 1 of 4) Tigger3a|DNA|TcMar-Tigger 3991 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 389-397 chrX 83474236 83474607 + 2 NA Intergenic L1PA15|LINE|L1 -33869 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 243-415 chr7 38512175 38512362 + 2 NA intron (NM_001635, intron 2 of 20) intron (NM_001635, intron 2 of 20) 119105 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 391-158 chr2 17375434 17375696 + 2 NA Intergenic Intergenic 142875 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 356-69 chr10 124340605 124340813 + 2 NA Intergenic MIRc|SINE|MIR 78214 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 483-45 chr12 24084441 24084808 + 2 NA intron (NM_152989, intron 4 of 17) intron (NM_152989, intron 4 of 17) -127797 NR_030625 100126320 NR_030625 ENSG00000216192 MIR920 MIRN920|hsa-mir-920 microRNA 920 ncRNA 697-2 chr1 188968144 188968642 + 2 NA Intergenic Intergenic 1507617 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 284-133 chr15 55794718 55794869 + 2 NA Intergenic Intergenic -51641 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 228-306 chr6 163920645 163920800 + 2 NA Intergenic Intergenic -249238 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 293-380 chr6 132098769 132099022 + 2 NA Intergenic Intergenic 16368 NR_039673 100616191 NR_039673 ENSG00000265669 MIR548AJ1 - microRNA 548aj-1 ncRNA 219-360 chr8 108437423 108437604 + 2 NA Intergenic Intergenic -6070 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 313-119 chr13 34315333 34315556 + 2 NA Intergenic L1ME3G|LINE|L1 -32599 NR_146542 105370158 NR_146542 LINC02343 - long intergenic non-protein coding RNA 2343 ncRNA 309-228 chr19 46255375 46255656 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 25773 NM_198541 374918 Hs.546554 NM_198541 ENSG00000188293 IGFL1 APRG644|UNQ644 IGF like family member 1 protein-coding 290-287 chr3 96067705 96067924 + 2 NA Intergenic MER68C|LTR|ERVL -292150 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 313-129 chr13 96904309 96904547 + 2 NA Intergenic LTR33C|LTR|ERVL 79744 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 426-205 chr4 57351719 57352096 + 2 NA Intergenic Intergenic -73965 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 212-141 chr2 5727243 5727425 + 2 NA Intergenic MIR|SINE|MIR 34950 NM_003108 6664 Hs.432638 NM_003108 ENSG00000176887 SOX11 MRD27 SRY-box transcription factor 11 protein-coding 415-88 chr16 20246992 20247379 + 2 NA Intergenic Intergenic 80328 NM_001007242 2813 Hs.53985 NM_001502 ENSG00000169347 GP2 ZAP75 glycoprotein 2 protein-coding 810-2 chr1 180376816 180377302 + 2 NA intron (NM_032360, intron 6 of 7) L1MC4a|LINE|L1 61331 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 708-20 chr12 65739372 65739916 + 2 NA Intergenic Intergenic -84816 NM_001300918 8091 Hs.505924 NM_003483 ENSG00000149948 HMGA2 BABL|HMGI-C|HMGIC|LIPO|STQTL9 high mobility group AT-hook 2 protein-coding 347-428 chr6 40062703 40062880 + 2 NA Intergenic LTR26C|LTR|ERV1 -128329 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 376-285 chr4 72885906 72886222 + 2 NA Intergenic L1MC5a|LINE|L1 183652 NM_001297733 285521 Hs.356697 NM_173827 ENSG00000163626 COX18 COX18HS cytochrome c oxidase assembly factor COX18 protein-coding 405-92 chr14_GL000225v1_random 112300 112516 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 424-282 chr8 124322001 124322291 + 2 NA exon (NM_194291, exon 5 of 7) exon (NM_194291, exon 5 of 7) 50553 NM_194291 157378 Hs.100691 NM_194291 ENSG00000164983 TMEM65 - transmembrane protein 65 protein-coding 194-92 chr2 84328684 84328864 + 2 NA Intergenic Intergenic 38092 NR_003663 388965 Hs.664098 NM_001013648 FUNDC2P2 - FUN14 domain containing 2 pseudogene 2 pseudo 272-15 chr1 165038384 165038587 + 2 NA Intergenic L1M5|LINE|L1 -263844 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 388-145 chr19 56532054 56532293 + 2 NA Intergenic L1PBa1|LINE|L1 -6775 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 115-49 chr8 121844811 121844877 + 2 NA Intergenic Intergenic -203404 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 255-179 chr19 52284113 52284266 + 2 NA intron (NM_001010851, intron 3 of 3) intron (NM_001010851, intron 3 of 3) 2392 NR_030373 693228 NR_030373 ENSG00000208002 MIR643 MIRN643|hsa-mir-643|mir-643 microRNA 643 ncRNA 238-204 chr20 42634997 42635185 + 2 NA intron (NM_133170, intron 7 of 31) intron (NM_133170, intron 7 of 31) -50392 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 359-315 chr3 62773657 62773964 + 2 NA intron (NM_003716, intron 1 of 29) intron (NM_003716, intron 1 of 29) 101606 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 138-101 chr9 103491924 103492002 + 2 NA Intergenic LTR106_Mam|LTR|LTR -166930 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 294-457 chr8 36484112 36484385 + 2 NA Intergenic Intergenic -300126 NR_134267 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 344-477 chr8 15114163 15114360 + 2 NA intron (NM_139167, intron 1 of 7) MIRc|SINE|MIR 124170 NM_001322879 137868 Hs.545526 NM_139167 ENSG00000185053 SGCZ ZSG1 sarcoglycan zeta protein-coding 184-11 chr1 147077324 147077473 + 2 NA Intergenic Intergenic 7358 NR_121645 101447996 NR_121645 ENSG00000286172 RNVU1-8 RNU1-145|vU1.8 RNA, variant U1 small nuclear 8 snRNA 307-2 chr1 18225645 18225943 + 2 NA intron (NM_032880, intron 1 of 9) intron (NM_032880, intron 1 of 9) 117996 NM_032880 84966 Hs.212511 NM_032880 ENSG00000117154 IGSF21 - immunoglobin superfamily member 21 protein-coding 271-242 chr21 30204645 30204831 + 2 NA Intergenic Intergenic 7045 NR_038855 266919 Hs.561028 NR_038855 ENSG00000227342 LINC00307 D21S2091E|NCRNA00307 long intergenic non-protein coding RNA 307 ncRNA 134-47 chr2 189898086 189898166 + 2 NA Intergenic AluJb|SINE|Alu 113676 NR_110332 5378 Hs.111749 NM_000534 ENSG00000064933 PMS1 HNPCC3|MLH2|PMSL1|hPMS1 PMS1 homolog 1, mismatch repair system component protein-coding 580-45 chr13 81465652 81466001 + 2 NA Intergenic MIRb|SINE|MIR -238843 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 434-12 chr1 102199417 102199833 + 2 NA Intergenic LTR80B|LTR|ERVL -202391 NR_110210 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 623-74 chr20 22127497 22127952 + 2 NA Intergenic L1MA9|LINE|L1 73634 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 129-58 chr4 33626679 33626786 + 2 NA Intergenic Intergenic 413161 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 290-311 chr4 55538630 55538812 + 2 NA intron (NM_004898, intron 1 of 22) L1MEg|LINE|L1 7211 NM_001267843 9575 Hs.436975 NM_004898 ENSG00000134852 CLOCK KAT13D|bHLHe8 clock circadian regulator protein-coding 395-145 chr18 76108181 76108470 + 2 NA Intergenic L1MDa|LINE|L1 -14673 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 387-349 chr7 95339964 95340173 + 2 NA Intergenic MLT1J-int|LTR|ERVL-MaLR -15536 NM_000446 5444 Hs.370995 NM_000446 ENSG00000005421 PON1 ESA|MVCD5|PON paraoxonase 1 protein-coding 266-418 chr8 85347996 85348223 + 2 NA intron (NM_001128830, intron 1 of 8) intron (NM_001128830, intron 1 of 8) -6395 NM_001164830 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 516-156 chr21 19907650 19908138 + 2 NA Intergenic Intergenic -8139 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 279-19 chr1 151218146 151218388 + 2 NA intron (NM_001135637, intron 1 of 13) intron (NM_001135637, intron 1 of 13) 19715 NM_001330689 8394 Hs.655131 NM_003557 ENSG00000143398 PIP5K1A - phosphatidylinositol-4-phosphate 5-kinase type 1 alpha protein-coding 343-56 chr10 84903439 84903677 + 2 NA Intergenic Intergenic 295347 NR_120668 101929624 Hs.588831 NR_120667 ENSG00000237267 LINC01519 - long intergenic non-protein coding RNA 1519 ncRNA 253-33 chr1 229960925 229961122 + 2 NA Intergenic MER2B|DNA|TcMar-Tigger -41694 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 352-452 chr6 51710565 51710838 + 2 NA intron (NM_138694, intron 60 of 66) intron (NM_138694, intron 60 of 66) 88831 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 455-202 chr4 183568716 183569096 + 2 NA Intergenic L2a|LINE|L2 62824 NM_001291959 3622 Hs.107153 NM_001564 ENSG00000168556 ING2 ING1L|p33ING2 inhibitor of growth family member 2 protein-coding 415-135 chr2 128536525 128536893 + 2 NA Intergenic AluSq2|SINE|Alu -217841 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 294-101 chr13 90537967 90538169 + 2 NA Intergenic L1PA15|LINE|L1 44780 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 316-144 chr12 118653543 118653785 + 2 NA Intergenic Intergenic 108015 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 250-95 chr12 81278793 81278974 + 2 NA promoter-TSS (NR_120491) promoter-TSS (NR_120491) -306 NR_120491 102724663 Hs.667264 NR_120491 ENSG00000257467 PPFIA2-AS1 - PPFIA2 antisense RNA 1 ncRNA 302-52 chr10 77089448 77089727 + 2 NA intron (NM_001271519, intron 10 of 28) intron (NM_001271519, intron 10 of 28) -51244 NR_120654 101929310 Hs.666457 NR_120654 ENSG00000225497 KCNMA1-AS2 - KCNMA1 antisense RNA 2 ncRNA 187-174 chr8 114622709 114622829 + 2 NA Intergenic L1MEf|LINE|L1 1045244 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 276-299 chr3 89151029 89151299 + 2 NA intron (NM_182644, intron 2 of 6) intron (NM_182644, intron 2 of 6) 43543 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 497-57 chr12 62448361 62448732 + 2 NA Intergenic Intergenic -18280 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 440-219 chr6 73040474 73040854 + 2 NA intron (NM_001160132, intron 2 of 13) intron (NM_001160132, intron 2 of 13) -72911 NR_036244 100423005 NR_036244 ENSG00000266180 MIR4282 - microRNA 4282 ncRNA 344-17 chr1 101624527 101624822 + 2 NA Intergenic Intergenic 222406 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 325-444 chr5 67528673 67528859 + 2 NA Intergenic L1ME3B|LINE|L1 118023 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 243-140 chr15 62734298 62734525 + 2 NA intron (NM_015059, intron 25 of 55) intron (NM_015059, intron 25 of 55) 87100 NM_015059 83660 Hs.569438 NM_015059 ENSG00000171914 TLN2 ILWEQ talin 2 protein-coding 201-243 chr8 112634818 112634979 + 2 NA intron (NM_001363185, intron 20 of 66) MIRb|SINE|MIR -8595 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 260-165 chr16 77377858 77378011 + 2 NA intron (NM_199355, intron 3 of 22) intron (NM_199355, intron 3 of 22) 57100 NM_001326358 170692 Hs.188746 NM_139054 ENSG00000140873 ADAMTS18 ADAMTS21|KNO2|MMCAT ADAM metallopeptidase with thrombospondin type 1 motif 18 protein-coding 234-170 chr2 71970448 71970595 + 2 NA Intergenic Intergenic 177341 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 187-192 chrX 103071758 103071922 + 2 NA Intergenic L1M3|LINE|L1 -7669 NM_018476 55859 Hs.334370 NM_018476 ENSG00000133169 BEX1 BEX2|HBEX2|HGR74-h brain expressed X-linked 1 protein-coding 305-166 chr15 27393362 27393559 + 2 NA intron (NM_001270873, intron 5 of 5) L1MC3|LINE|L1 -232141 NR_120343 101928869 Hs.585699 NR_120343 ENSG00000228740 GABRG3-AS1 - GABRG3 antisense RNA 1 ncRNA 653-11 chr1 210196671 210197138 + 2 NA Intergenic MER11A|LTR|ERVK -35892 NM_001354173 56256 Hs.600545 NM_019605 ENSG00000082497 SERTAD4 DJ667H12.2 SERTA domain containing 4 protein-coding 610-36 chr12 73258700 73259140 + 2 NA Intergenic L1MA8|LINE|L1 99730 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 231-167 chr2 95229603 95229775 + 2 NA Intergenic L1ME3|LINE|L1 -44760 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 523-83 chr15 26462586 26462929 + 2 NA Intergenic L1PA13|LINE|L1 166333 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 272-208 chr2 117741644 117741826 + 2 NA Intergenic Intergenic -72956 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 305-263 chr2 102214461 102214637 + 2 NA intron (NM_001351447, intron 4 of 9) L1M5|LINE|L1 27235 NM_001351446 8808 Hs.659863 NM_003854 ENSG00000115598 IL1RL2 IL-1Rrp2|IL-36R|IL1R-rp2|IL1RRP2 interleukin 1 receptor like 2 protein-coding 386-38 chr10 57287070 57287421 + 2 NA Intergenic Intergenic 17314 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 475-212 chr5 3028379 3028739 + 2 NA Intergenic MIR|SINE|MIR 110705 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 321-269 chr19 53147822 53148030 + 2 NA intron (NM_001172675, intron 4 of 4) L1M1|LINE|L1 11127 NM_032584 84671 Hs.467239 NM_032584 ENSG00000197937 ZNF347 ZNF1111 zinc finger protein 347 protein-coding 427-116 chr2 72283224 72283602 + 2 NA intron (NR_135773, intron 19 of 21) L1MC1|LINE|L1 -135551 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 264-257 chr21 34174912 34175170 + 2 NA Intergenic L1ME1|LINE|L1 -5636 NR_027267 114036 Hs.720230 NM_153751 ENSG00000227456 LINC00310 C21orf82|NCRNA00310 long intergenic non-protein coding RNA 310 ncRNA 292-319 chr4 66392055 66392287 + 2 NA Intergenic L2a|LINE|L2 115347 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 211-86 chr14 66302675 66302828 + 2 NA Intergenic Intergenic -183620 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 329-544 chr7 79795344 79795550 + 2 NA Intergenic MER72|LTR|ERV1 -339384 NM_002069 2770 Hs.134587 NM_002069 ENSG00000127955 GNAI1 Gi G protein subunit alpha i1 protein-coding 185-45 chr12 23633211 23633367 + 2 NA intron (NM_152989, intron 11 of 17) intron (NM_152989, intron 11 of 17) -48703 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 347-141 chr14 95248753 95249098 + 2 NA intron (NM_024734, intron 1 of 12) intron (NM_024734, intron 1 of 12) 70983 NM_024734 79789 Hs.301478 NM_024734 ENSG00000165959 CLMN - calmin protein-coding 222-255 chr3 179279995 179280206 + 2 NA Intergenic Intergenic -13050 NM_001163677 27094 Hs.591285 NM_014407 ENSG00000171121 KCNMB3 BKBETA3|HBETA3|K(VCA)BETA-3|KCNMB2|KCNMBL|SLO-BETA-3|SLOBETA3 potassium calcium-activated channel subfamily M regulatory beta subunit 3 protein-coding 353-40 chr1 230620149 230620366 + 2 NA Intergenic MER4CL34|LTR|ERV1 -22224 NM_001145036 22796 Hs.211800 NM_007357 ENSG00000135775 COG2 CDG2Q|LDLC component of oligomeric golgi complex 2 protein-coding 257-202 chr2 110673332 110673508 + 2 NA intron (NM_001278616, intron 2 of 23) MER21B|LTR|ERVL 4643 NM_004336 699 Hs.469649 NM_004336 ENSG00000169679 BUB1 BUB1A|BUB1L|hBUB1 BUB1 mitotic checkpoint serine/threonine kinase protein-coding 420-32 chr10 26090694 26091056 + 2 NA intron (NM_017433, intron 15 of 34) intron (NM_017433, intron 15 of 34) -125432 NM_000818 2572 Hs.231829 NM_000818 ENSG00000136750 GAD2 GAD65 glutamate decarboxylase 2 protein-coding 315-187 chr17 16613633 16613814 + 2 NA Intergenic L1ME2|LINE|L1 40127 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 271-386 chr6 118579335 118579528 + 2 NA intron (NM_001042475, intron 2 of 12) intron (NM_001042475, intron 2 of 12) 31135 NM_002667 5350 Hs.170839 NM_002667 ENSG00000198523 PLN CMD1P|CMH18|PLB phospholamban protein-coding 191-48 chr13 79950375 79950496 + 2 NA Intergenic Intergenic -60642 NR_104138 101515984 Hs.569290 NR_104138 LINC01080 TCONS_00021856 long intergenic non-protein coding RNA 1080 ncRNA 307-473 chr8 36798049 36798244 + 2 NA intron (NM_001031836, intron 2 of 26) LTR50|LTR|ERVL 13772 NM_001031836 157855 Hs.13861 NM_001031836 ENSG00000215262 KCNU1 KCNMC1|KCa5|KCa5.1|Kcnma3|Slo3 potassium calcium-activated channel subfamily U member 1 protein-coding 525-135 chr2 195438298 195438668 + 2 NA Intergenic MER51-int|LTR|ERV1 -218475 NM_001127257 57181 Hs.650158 NM_020342 ENSG00000196950 SLC39A10 LZT-Hs2 solute carrier family 39 member 10 protein-coding 144-48 chr2 100621915 100622012 + 2 NA Intergenic Intergenic 18224 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 387-299 chr5 147336175 147336530 + 2 NA intron (NM_001112724, intron 5 of 12) MamRep38|DNA|hAT 101326 NM_001112724 202374 Hs.585069 NM_145001 ENSG00000169302 STK32A YANK1 serine/threonine kinase 32A protein-coding 505-287 chr7 53550396 53550718 + 2 NA Intergenic Intergenic 261374 NR_038371 401337 Hs.531378 NM_001001707 ENSG00000205628 LINC01446 GS1-179L18.1 long intergenic non-protein coding RNA 1446 ncRNA 282-419 chr7 31387031 31387244 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -46411 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 774-48 chr2 162145478 162145933 + 2 NA intron (NM_002054, intron 3 of 5) intron (NM_002054, intron 3 of 5) 6542 NM_002054 2641 Hs.516494 NM_002054 ENSG00000115263 GCG GLP-1|GLP1|GLP2|GRPP glucagon protein-coding 533-219 chr7 87553654 87554119 + 2 NA exon (NM_001348946, exon 9 of 28) exon (NM_001348946, exon 9 of 28) 46998 NM_001348946 5243 Hs.489033 NM_000927 ENSG00000085563 ABCB1 ABC20|CD243|CLCS|GP170|MDR1|P-GP|PGY1 ATP binding cassette subfamily B member 1 protein-coding 219-355 chr8 72411420 72411592 + 2 NA Intergenic L2a|LINE|L2 -125719 NM_004770 9312 Hs.661102 NM_004770 ENSG00000182674 KCNB2 KV2.2 potassium voltage-gated channel subfamily B member 2 protein-coding 502-35 chr10 52787327 52787668 + 2 NA Intergenic Intergenic -15797 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 546-86 chr17 16638972 16639491 + 2 NA intron (NM_020787, intron 3 of 5) intron (NM_020787, intron 3 of 5) 14619 NM_020787 57547 Hs.128078 NM_020787 ENSG00000197566 ZNF624 - zinc finger protein 624 protein-coding 250-157 chr17 32248698 32248887 + 2 NA Intergenic L1MB7|LINE|L1 -17040 NM_001330181 162494 Hs.655027 NM_138328 ENSG00000141314 RHBDL3 RHBDL4|VRHO rhomboid like 3 protein-coding 323-179 chr16 60271909 60272078 + 2 NA Intergenic Intergenic 87800 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 432-308 chrX 111668287 111668648 + 2 NA Intergenic LTR37-int|LTR|ERV1 -12651 NR_033125 79868 Hs.443061 NM_018466 ENSG00000101901 ALG13 CDG1S|CXorf45|EIEE36|GLT28D1|MDS031|TDRD13|YGL047W ALG13 UDP-N-acetylglucosaminyltransferase subunit protein-coding 344-515 chr9 27313239 27313532 + 2 NA Intergenic Intergenic -16235 NM_020641 54586 Hs.163070 NM_020641 ENSG00000120160 EQTN AFAF|C9orf11|SPACA8 equatorin protein-coding 424-214 chr5 23478605 23478961 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -28826 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 658-106 chr6 49706818 49707390 + 2 NA intron (NM_001261822, intron 3 of 8) intron (NM_001261822, intron 3 of 8) 6439 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 310-467 chr7 2981776 2981955 + 2 NA intron (NM_001324281, intron 1 of 25) MLT2B2|LTR|ERVL 62002 NM_032415 84433 Hs.648101 NM_032415 ENSG00000198286 CARD11 BENTA|BIMP3|CARMA1|IMD11|IMD11A|PPBL caspase recruitment domain family member 11 protein-coding 482-142 chr2 229322082 229322403 + 2 NA Intergenic L1PREC2|LINE|L1 -50955 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 293-484 chrX 17092431 17092685 + 2 NA intron (NM_001080975, intron 13 of 17) intron (NM_001080975, intron 13 of 17) 145900 NM_001080975 9185 Hs.186810 NM_004726 ENSG00000169891 REPS2 POB1 RALBP1 associated Eps domain containing 2 protein-coding 205-103 chr15 79877205 79877390 + 2 NA intron (NR_037654, intron 2 of 2) L1M4a1|LINE|L1 19700 NR_037654 10588 Hs.194294 NM_006441 ENSG00000136371 MTHFS HsT19268|NEDMEHM methenyltetrahydrofolate synthetase protein-coding 326-290 chr20 15232452 15232676 + 2 NA intron (NM_001351663, intron 6 of 17) MIRc|SINE|MIR 35724 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 225-34 chr10 39265280 39265459 + 2 NA Intergenic L1PA5|LINE|L1 568773 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 497-208 chr4 154522197 154522565 + 2 NA Intergenic Intergenic 28019 NM_002669 5356 Hs.249996 NM_002669 ENSG00000171566 PLRG1 Cwc1|PRL1|PRP46|PRPF46|TANGO4 pleiotropic regulator 1 protein-coding 327-263 chr2 79603435 79603649 + 2 NA intron (NM_001282598, intron 1 of 17) L1M5|LINE|L1 45817 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 508-215 chr6 154164097 154164500 + 2 NA intron (NM_015553, intron 11 of 11) intron (NM_015553, intron 11 of 11) 74536 NM_001285527 4988 Hs.2353 NM_000914 ENSG00000112038 OPRM1 LMOR|M-OR-1|MOP|MOR|MOR1|OPRM opioid receptor mu 1 protein-coding 243-250 chr20 7591109 7591318 + 2 NA Intergenic MIR3|SINE|MIR 219605 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 310-132 chr14 48320897 48321078 + 2 NA Intergenic Intergenic -525973 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 376-101 chr14 38628047 38628311 + 2 NA Intergenic L1PA13|LINE|L1 -254417 NR_135256 105370457 Hs.128254 NR_135256 LOC105370457 - uncharacterized LOC105370457 ncRNA 124-30 chr17 34512096 34512184 + 2 NA Intergenic L2c|LINE|L2 67229 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 176-97 chr4 66186754 66186905 + 2 NA Intergenic L1MA9|LINE|L1 -89995 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 414-45 chr11 56428432 56428684 + 2 NA Intergenic HSMAR1|DNA|TcMar-Mariner -10326 NM_001004744 219479 Hs.553630 NM_001004744 ENSG00000279961 OR5R1 OR11-185|OR5R1P olfactory receptor family 5 subfamily R member 1 (gene/pseudogene) protein-coding 337-206 chr17 65809007 65809248 + 2 NA intron (NR_126542, intron 1 of 5) MSTD|LTR|ERVL-MaLR 17324 NM_001037325 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 279-327 chr5 66548220 66548404 + 2 NA Intergenic L1ME1|LINE|L1 -36708 NR_105001 101928769 Hs.97903 NR_105001 ENSG00000250313 LINC02229 - long intergenic non-protein coding RNA 2229 ncRNA 250-467 chrX 70579886 70580021 + 2 NA intron (NM_001003811, intron 26 of 30) L1MA3|LINE|L1 -123959 NR_109801 100873930 Hs.571699 NR_046586 ENSG00000231651 DLG3-AS1 - DLG3 antisense RNA 1 ncRNA 643-12 chr10 51792756 51793284 + 2 NA intron (NM_001098512, intron 3 of 17) L1M1|LINE|L1 -93425 NM_015235 23283 Hs.591358 NM_015235 ENSG00000177613 CSTF2T CstF-64T cleavage stimulation factor subunit 2 tau variant protein-coding 284-190 chr2 28736034 28736248 + 2 NA promoter-TSS (NR_145832) promoter-TSS (NR_145832) 64 NR_145832 100505774 Hs.595909 NR_145832 ENSG00000226833 LOC100505774 - uncharacterized LOC100505774 ncRNA 278-245 chr20 1822978 1823206 + 2 NA Intergenic L1MB4|LINE|L1 -43346 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 357-329 chr5 7527451 7527730 + 2 NA intron (NM_020546, intron 3 of 24) intron (NM_020546, intron 3 of 24) 131452 NM_020546 108 Hs.481545 NM_020546 ENSG00000078295 ADCY2 AC2|HBAC2 adenylate cyclase 2 protein-coding 315-389 chr5 95421957 95422147 + 2 NA intron (NM_152548, intron 5 of 9) intron (NM_152548, intron 5 of 9) 30686 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 415-236 chr6 71634049 71634320 + 2 NA Intergenic L1MA5|LINE|L1 213157 NR_121615 102724000 Hs.145785 NR_121615 LINC01626 - long intergenic non-protein coding RNA 1626 ncRNA 175-137 chr5 156483337 156483485 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 156247 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 342-399 chr5 57801111 57801445 + 2 NA Intergenic L1PA16|LINE|L1 97884 NR_109900 101928539 Hs.639385 NR_109900 ENSG00000249584 LINC02225 - long intergenic non-protein coding RNA 2225 ncRNA 210-21 chr1 207978294 207978449 + 2 NA Intergenic L1MC4a|LINE|L1 -67246 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 461-116 chr19 37460025 37460362 + 2 NA intron (NM_001330482, intron 2 of 4) AluSx|SINE|Alu 7251 NM_001330482 148266 Hs.511848 NM_152484 ENSG00000196437 ZNF569 ZAP1|ZNF zinc finger protein 569 protein-coding 690-6 chr10 52520172 52520695 + 2 NA Intergenic MER41A|LTR|ERV1 -49900 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 266-222 chr20 62501908 62502147 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -26032 NM_080473 140628 Hs.352250 NM_080473 ENSG00000130700 GATA5 CHTD5|GATAS|bB379O24.1 GATA binding protein 5 protein-coding 401-34 chr10 65009681 65009953 + 2 NA Intergenic L1MC1|LINE|L1 -85299 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 259-276 chr4 17050711 17050879 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 135262 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 264-21 chr1 213963893 213964132 + 2 NA intron (NR_037850, intron 2 of 5) L1MA9|LINE|L1 22141 NR_037850 100505832 Hs.664625 NR_037850 PROX1-AS1 - PROX1 antisense RNA 1 ncRNA 745-31 chr2 89844167 89844753 + 2 NA Intergenic Intergenic -206553 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 358-110 chr13 91098856 91099132 + 2 NA Intergenic Charlie2a|DNA|hAT-Charlie -9377 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 373-244 chr21 28793875 28794163 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 91348 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 330-27 chr1 158596426 158596737 + 2 NA Intergenic L1MA4A|LINE|L1 -9858 NM_001004478 128368 Hs.553590 NM_001004478 ENSG00000198967 OR10Z1 OR1-15 olfactory receptor family 10 subfamily Z member 1 protein-coding 427-33 chr10 111205049 111205396 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 90931 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 202-101 chr18 45108370 45108479 + 2 NA Intergenic L2a|LINE|L2 -59539 NM_001371319 593-88 chr20 45607209 45607644 + 2 NA TTS (NM_147198) TTS (NM_147198) -22313 NM_080753 140832 Hs.199380 NM_080753 ENSG00000180305 WFDC10A C20orf146|WAP10|dJ688G8.3 WAP four-disulfide core domain 10A protein-coding 424-140 chr2 126405847 126406218 + 2 NA Intergenic Intergenic -249903 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 424-75 chr14 80204716 80205018 + 2 NA intron (NM_001324462, intron 2 of 2) intron (NM_001324462, intron 2 of 2) -6552 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 283-418 chr7 48954577 48954835 + 2 NA Intergenic L1MD|LINE|L1 30159 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 536-258 chrX 95250687 95251070 + 2 NA Intergenic Intergenic -187652 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 273-347 chr5 26520118 26520261 + 2 NA Intergenic L1ME1|LINE|L1 518397 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 757-45 chr5 9887098 9887602 + 2 NA intron (NR_027112, intron 2 of 12) intron (NR_027112, intron 2 of 12) 16474 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 244-149 chr2 11949219 11949431 + 2 NA Intergenic L1ME1|LINE|L1 -57791 NR_110198 100506457 Hs.197824 NR_110196 ENSG00000224184 MIR3681HG - MIR3681 host gene ncRNA 572-92 chr2 115680825 115681284 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 337239 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 239-146 chr18 31501896 31502071 + 2 NA intron (NM_001943, intron 1 of 14) intron (NM_001943, intron 1 of 14) 3806 NM_001943 1829 Hs.412597 NM_001943 ENSG00000046604 DSG2 CDHF5|HDGC desmoglein 2 protein-coding 543-98 chr17 61346642 61347042 + 2 NA intron (NM_001330413, intron 23 of 25) L2a|LINE|L2 20862 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 241-430 chrUn_KI270756v1 28332 28507 + 2 NA NA (CCATTCCATT)n|Simple_repeat|Simple_repeat NA NA 238-122 chr15 91450943 91451155 + 2 NA Intergenic L1PB1|LINE|L1 -12290 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 377-333 chr5 118801771 118801982 + 2 NA Intergenic MamRep605|LTR?|LTR? -172710 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 437-295 chr9 83209480 83209830 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie 57613 NM_001244962 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 173-103 chr4 101774241 101774382 + 2 NA Intergenic L1MB7|LINE|L1 -16296 NM_001127507 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 571-189 chr9 82111975 82112534 + 2 NA Intergenic Intergenic 123482 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 312-178 chr16 58800334 58800629 + 2 NA Intergenic L1MCa|LINE|L1 -66165 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 249-172 chr19 27686319 27686476 + 2 NA Intergenic ALR/Alpha|Satellite|centr -107034 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 299-218 chr2 121386530 121386802 + 2 NA intron (NM_015282, intron 31 of 38) intron (NM_015282, intron 31 of 38) -101464 NM_014553 29842 Hs.156471 NM_014553 ENSG00000115112 TFCP2L1 CRTR1|LBP-9|LBP9 transcription factor CP2 like 1 protein-coding 384-305 chr5 144235132 144235369 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 29859 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 313-109 chr12 42372724 42372961 + 2 NA intron (NM_001364830, intron 3 of 6) L2b|LINE|L2 41044 NM_001364834 51535 Hs.444157 NM_016488 ENSG00000134283 PPHLN1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 393-320 chr7 3855202 3855546 + 2 NA intron (NM_152744, intron 5 of 44) L1ME3G|LINE|L1 -274311 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 488-91 chr15 59801793 59802187 + 2 NA Intergenic L1M7|LINE|L1 -112670 NM_001368060 663 Hs.592515 NM_004330 ENSG00000140299 BNIP2 BNIP-2|NIP2 BCL2 interacting protein 2 protein-coding 178-86 chr3 45145220 45145370 + 2 NA intron (NM_178181, intron 1 of 3) intron (NM_178181, intron 1 of 3) 1083 NM_022842 64866 Hs.476093 NM_022842 ENSG00000163814 CDCP1 CD318|SIMA135|TRASK CUB domain containing protein 1 protein-coding 457-158 chr3 82816764 82817153 + 2 NA Intergenic L1M5|LINE|L1 830816 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 291-220 chr2 80753749 80753941 + 2 NA Intergenic AluSc|SINE|Alu 440466 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 321-433 chr4 131425113 131425385 + 2 NA Intergenic Intergenic -339589 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 478-274 chr7 91446370 91446782 + 2 NA Intergenic Intergenic 182143 NM_003505 8321 Hs.94234 NM_003505 ENSG00000157240 FZD1 - frizzled class receptor 1 protein-coding 436-15 chr1 118804160 118804581 + 2 NA Intergenic L1PA17|LINE|L1 183973 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 114-4 chr10 53007970 53008076 + 2 NA Intergenic Intergenic -236323 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 585-42 chr14 62928547 62928946 + 2 NA intron (NM_139318, intron 7 of 10) L2|LINE|L2 116712 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 600-10 chr10 9422444 9422834 + 2 NA Intergenic L1MEc|LINE|L1 -127046 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 294-13 chr1 154751252 154751477 + 2 NA intron (NM_001204087, intron 3 of 8) intron (NM_001204087, intron 3 of 8) 108512 NM_170782 3782 Hs.490765 NM_002249 ENSG00000143603 KCNN3 KCa2.3|SK3|SKCA3|hSK3 potassium calcium-activated channel subfamily N member 3 protein-coding 300-173 chr19 36880649 36880870 + 2 NA intron (NR_038362, intron 2 of 2) AluJr|SINE|Alu 29108 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 477-86 chr13 92224324 92224656 + 2 NA intron (NM_004466, intron 7 of 7) MER68|LTR|ERVL 127717 NR_120382 100873970 Hs.567269 NR_120382 GPC5-AS2 - GPC5 antisense RNA 2 ncRNA 472-223 chr4 33544865 33545321 + 2 NA Intergenic Intergenic 494800 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 699-63 chr20 59228672 59229220 + 2 NA intron (NM_178457, intron 3 of 4) L1MA4|LINE|L1 37926 NM_178457 128611 Hs.473204 NM_178457 ENSG00000124203 ZNF831 C20orf174 zinc finger protein 831 protein-coding 293-315 chr4 137726001 137726291 + 2 NA Intergenic Intergenic 180415 NR_146553 105377443 Hs.135587 NR_146553 ENSG00000251632 LINC02172 - long intergenic non-protein coding RNA 2172 ncRNA 419-82 chr13 105501864 105502169 + 2 NA intron (NR_040247, intron 1 of 6) intron (NR_040247, intron 1 of 6) 3665 NR_040247 282706 Hs.558713 NR_040247 ENSG00000232307 DAOA-AS1 DAOA-AS|DAOAAS|G30 DAOA antisense RNA 1 ncRNA 121-59 chr7 37998392 37998461 + 2 NA Intergenic L1PA6|LINE|L1 77107 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 448-69 chr12 129994465 129994809 + 2 NA Intergenic Intergenic 47705 NR_024457 100190940 Hs.625993 NR_024457 ENSG00000214039 LINC02418 - long intergenic non-protein coding RNA 2418 ncRNA 359-108 chr12 14075425 14075733 + 2 NA Intergenic L1MEg|LINE|L1 -95223 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 319-82 chr10 129814366 129814614 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 28884 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 215-160 chr2 182010807 182010961 + 2 NA intron (NM_001261425, intron 2 of 5) L1MA3|LINE|L1 25031 NM_001261425 151242 Hs.10941 NM_001080545 ENSG00000150722 PPP1R1C IPP5 protein phosphatase 1 regulatory inhibitor subunit 1C protein-coding 361-491 chrX 97781551 97781899 + 2 NA Intergenic L1ME1|LINE|L1 -217190 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 336-337 chr21 24971477 24971713 + 2 NA intron (NR_046198, intron 2 of 3) L1MB8|LINE|L1 131045 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 614-139 chr8 130713864 130714375 + 2 NA Intergenic L1MA10|LINE|L1 -270445 NM_001362925 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 451-189 chr5 165121249 165121523 + 2 NA Intergenic Intergenic 651107 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 437-114 chr19 27619458 27619795 + 2 NA Intergenic ALR/Alpha|Satellite|centr -173805 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 382-363 chr6 123134327 123134679 + 2 NA Intergenic Intergenic 138268 NM_001010852 134829 Hs.486361 NM_001010852 ENSG00000146352 CLVS2 C6orf212|C6orf213|RLBP1L2|bA160A10.4 clavesin 2 protein-coding 116-10 chr11 115244304 115244369 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) -89241 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 326-445 chr6 40303548 40303826 + 2 NA Intergenic MER3|DNA|hAT-Charlie 52319 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 485-283 chr8 76579211 76579647 + 2 NA Intergenic Intergenic -101818 NM_024721 79776 Hs.458973 NM_024721 ENSG00000091656 ZFHX4 ZFH4|ZHF4 zinc finger homeobox 4 protein-coding 257-114 chr14 70565177 70565394 + 2 NA Intergenic L1M3c|LINE|L1 -30281 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 229-330 chr6 19650522 19650693 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 154152 NR_134649 100506885 Hs.346489 NR_134649 ENSG00000228412 LOC100506885 - uncharacterized LOC100506885 ncRNA 218-148 chr2 52681996 52682208 + 2 NA Intergenic L1MA4A|LINE|L1 20513 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 321-158 chr13 77678952 77679246 + 2 NA Intergenic L1PB4|LINE|L1 -16296 NM_001310140 100129307 NM_001310140 LOC100129307 - putative UPF0607 protein ENSP00000383144 protein-coding 340-573 chr9 118054949 118055163 + 2 NA Intergenic L1MC5a|LINE|L1 350653 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 255-136 chr16 8341176 8341349 + 2 NA Intergenic L1MD3|LINE|L1 248576 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 117-36 chr6 51562515 51562573 + 2 NA Intergenic Intergenic -59326 NR_125840 101927082 Hs.730296 NR_125840 LOC101927082 - uncharacterized LOC101927082 ncRNA 563-188 chr8 136946365 136946782 + 2 NA Intergenic Intergenic 415775 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 590-153 chr7 15314496 15314888 + 2 NA intron (NM_001004320, intron 12 of 12) MLT1E2|LTR|ERVL-MaLR 247323 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 379-84 chr13 76661450 76661783 + 2 NA Intergenic Intergenic 224789 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 322-33 chr1 181866194 181866393 + 2 NA Intergenic L1PA16|LINE|L1 195419 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 334-136 chr13 107943652 107943826 + 2 NA Intergenic L1PA15-16|LINE|L1 -76243 NM_001080396 728215 Hs.535394 NM_001080396 ENSG00000204442 FAM155A - family with sequence similarity 155 member A protein-coding 228-364 chr9 26584903 26585057 + 2 NA Intergenic L1MA9|LINE|L1 307822 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 329-315 chr2 237246799 237246977 + 2 NA Intergenic HERVL-int|LTR|ERVL 160999 NM_006710 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 405-338 chr8 139380562 139380933 + 2 NA Intergenic Intergenic 322376 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 301-285 chr3 99924078 99924247 + 2 NA intron (NM_001042459, intron 4 of 4) L2c|LINE|L2 40236 NR_037486 100500859 NR_037486 ENSG00000264897 MIR3921 - microRNA 3921 ncRNA 602-111 chr5 150920310 150920863 + 2 NA Intergenic L1MDa|LINE|L1 -15603 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 505-267 chr6 50967389 50967760 + 2 NA Intergenic Intergenic 148703 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 382-281 chr3 189523936 189524254 + 2 NA Intergenic L1PA16|LINE|L1 -72651 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 242-272 chr4 90858749 90858903 + 2 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 623795 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 430-93 chr15 57808460 57808860 + 2 NA Intergenic Intergenic 101946 NM_015532 81488 Hs.437256 NM_015532 ENSG00000255529 POLR2M GCOM1|GRINL1A|Gdown|Gdown1 RNA polymerase II subunit M protein-coding 361-427 chr8 10986808 10987114 + 2 NA intron (NM_173683, intron 1 of 2) AluJo|SINE|Alu 48341 NR_030328 693183 NR_030328 ENSG00000207600 MIR598 MIRN598|hsa-mir-598|mir-598 microRNA 598 ncRNA 277-353 chr6 76025930 76026199 + 2 NA intron (NM_001563, intron 4 of 16) MER61A|LTR|ERV1 46598 NM_001563 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 550-159 chr4 42758123 42758536 + 2 NA Intergenic Intergenic -101224 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 386-330 chr7 79238500 79238753 + 2 NA intron (NM_001301128, intron 1 of 20) intron (NM_001301128, intron 1 of 20) -214331 NR_038346 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 335-102 chr11 93593264 93593471 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -49976 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 366-266 chr22 44459054 44459396 + 2 NA Intergenic Intergenic 15898 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 206-188 chr4 126560255 126560435 + 2 NA Intergenic Intergenic 1053086 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 234-37 chr10 57756028 57756159 + 2 NA Intergenic MamGypLTR2b|LTR|Gypsy -451534 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 353-518 chr8 60859996 60860194 + 2 NA intron (NM_017780, intron 34 of 37) intron (NM_017780, intron 34 of 37) 107653 NR_034003 100130298 Hs.636194 NR_034003 LOC100130298 - hCG1816373-like ncRNA 182-24 chr10 132661420 132661555 + 2 NA intron (NM_005539, intron 4 of 15) L1ME1|LINE|L1 -19788 NM_001321042 3632 Hs.523360 NM_005539 ENSG00000068383 INPP5A 5PTASE inositol polyphosphate-5-phosphatase A protein-coding 411-214 chr4 130124995 130125282 + 2 NA Intergenic Intergenic -251223 NR_147186 105377420 NR_147186 LINC02479 - long intergenic non-protein coding RNA 2479 ncRNA 615-37 chr14 80819624 80820215 + 2 NA intron (NM_152446, intron 13 of 24) intron (NM_152446, intron 13 of 24) 121819 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 405-146 chr2 99698805 99699168 + 2 NA intron (NM_001025108, intron 10 of 23) intron (NM_001025108, intron 10 of 23) -208969 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 295-349 chr4 86230426 86230600 + 2 NA intron (NM_001363657, intron 2 of 13) intron (NM_001363657, intron 2 of 13) 110707 NR_110879 101929064 Hs.662221 NR_110879 ENSG00000250062 LOC101929064 - uncharacterized LOC101929064 ncRNA 461-151 chr20 10106436 10106840 + 2 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) 71651 NM_198798 63926 Hs.70903 NM_022096 ENSG00000132623 ANKEF1 ANKRD5 ankyrin repeat and EF-hand domain containing 1 protein-coding 296-371 chr5 60147448 60147702 + 2 NA intron (NM_001349243, intron 2 of 16) MLT1F|LTR|ERVL-MaLR 225088 NM_001364600 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 249-323 chr5 12353897 12354118 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -220850 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 314-380 chr3 94212497 94212747 + 2 NA Intergenic L1P4|LINE|L1 149561 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 298-96 chr12 46174638 46174871 + 2 NA Intergenic Intergenic 91762 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 490-277 chr7 135365844 135366296 + 2 NA intron (NM_001190849, intron 10 of 11) intron (NM_001190849, intron 10 of 11) 134091 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 273-87 chr11 112694612 112694874 + 2 NA Intergenic Intergenic -138941 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 419-134 chr2 25690980 25691393 + 2 NA Intergenic AluSz|SINE|Alu -17512 NM_001256304 1838 Hs.307720 NM_021907 ENSG00000138101 DTNB - dystrobrevin beta protein-coding 482-58 chr12 2451489 2451797 + 2 NA intron (NM_199460, intron 4 of 49).2 intron (NM_199460, intron 4 of 49).2 181867 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 320-532 chr8 46308139 46308389 + 2 NA Intergenic ALR/Alpha|Satellite|centr 309379 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 380-364 chr7 40994306 40994624 + 2 NA Intergenic Intergenic -14526 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 283-45 chr10 14426969 14427190 + 2 NA Intergenic Intergenic -9497 NR_031668 100302116 NR_031668 ENSG00000221371 MIR1265 MIRN1265|hsa-mir-1265 microRNA 1265 ncRNA 344-181 chr16 87149625 87149857 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -62374 NR_110939 101928708 Hs.585717 NR_110939 ENSG00000261095 LOC101928708 - uncharacterized LOC101928708 ncRNA 698-89 chr9 27973549 27974029 + 2 NA intron (NM_001354574, intron 5 of 5) intron (NM_001354574, intron 5 of 5) -399923 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 256-278 chr3 187888827 187888989 + 2 NA Intergenic MIR3|SINE|MIR 87499 NR_135538 105374266 Hs.570518 NR_135537 LINC01991 - long intergenic non-protein coding RNA 1991 ncRNA 648-20 chr11 24393217 24393808 + 2 NA Intergenic MER45B|DNA|hAT-Tip100 -103541 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 356-26 chr1 189488692 189488973 + 2 NA Intergenic Intergenic 987178 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 507-263 chr8 129816650 129817051 + 2 NA Intergenic L1PA16|LINE|L1 -30226 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 341-88 chr11 76151635 76151859 + 2 NA Intergenic Intergenic 54755 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 335-247 chr2 66049457 66049703 + 2 NA Intergenic Intergenic 308748 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 216-295 chr5 173272326 173272504 + 2 NA Intergenic L1ME4a|LINE|L1 -31315 NR_162132 113219469 NR_162132 MIR12118 - microRNA 12118 ncRNA 503-86 chr13 48009502 48009978 + 2 NA Intergenic Intergenic -8414 NM_003850 8803 Hs.743361 NM_003850 ENSG00000136143 SUCLA2 A-BETA|A-SCS|MTDPS5|SCS-betaA succinate-CoA ligase ADP-forming beta subunit protein-coding 452-272 chr8 102017330 102017613 + 2 NA intron (NM_001040624, intron 3 of 7) AluSx1|SINE|Alu 33039 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 302-358 chr5 132330780 132331043 + 2 NA intron (NM_003059, intron 5 of 9) MIRb|SINE|MIR 34688 NR_037500 100500865 NR_037500 ENSG00000263597 MIR3936 mir-3936 microRNA 3936 ncRNA 196-226 chr6 69257440 69257622 + 2 NA intron (NM_001704, intron 20 of 31) intron (NM_001704, intron 20 of 31) 538935 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 254-171 chr19 2834710 2834891 + 2 NA exon (NM_001102651, exon 5 of 5) exon (NM_001102651, exon 5 of 5) -6675 NM_001172775 148254 Hs.47712 NM_152791 ENSG00000186300 ZNF555 - zinc finger protein 555 protein-coding 328-271 chr2 104811594 104811796 + 2 NA intron (NR_037883, intron 3 of 3) L1ME3A|LINE|L1 39781 NR_131235 100506421 Hs.437281 NR_037883 ENSG00000233639 PANTR1 LINC01158|linc-Brn1a|linc-POU3F3 POU3F3 adjacent non-coding transcript 1 ncRNA 212-334 chr8 131164678 131164832 + 2 NA Intergenic Intergenic -123846 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 548-14 chr1 203353849 203354199 + 2 NA Intergenic Intergenic -2902 NR_103757 2331 Hs.519168 NM_002023 ENSG00000122176 FMOD FM|SLRR2E fibromodulin protein-coding 347-467 chr7 45284537 45284873 + 2 NA Intergenic L1MC3|LINE|L1 126914 NM_005856 10268 Hs.25691 NM_005856 ENSG00000122679 RAMP3 - receptor activity modifying protein 3 protein-coding 259-36 chr10 20384692 20384882 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -167183 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 512-188 chr4 46522563 46522970 + 2 NA Intergenic HERVL-int|LTR|ERVL -132638 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 303-362 chr5 80611215 80611428 + 2 NA intron (NR_125754, intron 1 of 1) L1ME3|LINE|L1 11203 NR_125754 103689917 Hs.740035 NR_125754 ENSG00000251221 LINC01337 TCONS_00009713 long intergenic non-protein coding RNA 1337 ncRNA 391-90 chr13 107721685 107722055 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 113588 NR_046848 100874375 Hs.653972 NR_046848 FAM155A-IT1 - FAM155A intronic transcript 1 ncRNA 380-366 chr7 50227527 50227725 + 2 NA Intergenic MIRc|SINE|MIR -76438 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 367-230 chr2 175659127 175659321 + 2 NA Intergenic L1MDa|LINE|L1 343043 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 645-120 chr8 78988727 78989110 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 151389 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 113-24 chr16 48794411 48794468 + 2 NA Intergenic Intergenic -184259 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 227-116 chr15 56678868 56679065 + 2 NA intron (NM_001002843, intron 9 of 20) intron (NM_001002843, intron 9 of 20) 55120 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 404-36 chr10 44128146 44128393 + 2 NA Intergenic (ATCAATC)n|Simple_repeat|Simple_repeat -164481 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 186-2 chr1 58253740 58253886 + 2 NA Intergenic Intergenic -3266 NM_001353980 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 217-107 chr13 96808027 96808163 + 2 NA intron (NM_153456, intron 1 of 1) intron (NM_153456, intron 1 of 1) 176077 NR_051966 100887754 Hs.617003 NR_051966 LINC00359 - long intergenic non-protein coding RNA 359 ncRNA 328-290 chr2 177586718 177587030 + 2 NA Intergenic Intergenic 31868 NM_152275 92104 Hs.128384 NM_152275 ENSG00000197557 TTC30A IFT70A|TTC30B tetratricopeptide repeat domain 30A protein-coding 349-259 chr2 83700523 83700865 + 2 NA Intergenic Intergenic 177880 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 331-513 chr8 4331537 4331811 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 663240 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 341-17 chr1 72978474 72978691 + 2 NA Intergenic Intergenic -327588 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 264-179 chr18 65645934 65646168 + 2 NA Intergenic Intergenic -104201 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 424-254 chr7 10756961 10757381 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 22773 NR_147499 79150 Hs.571301 NM_024304 ENSG00000283117 MGC4859 - uncharacterized LOC79150 ncRNA 305-481 chr6 112300910 112301173 + 2 NA intron (NR_121193, intron 2 of 2) intron (NR_121193, intron 2 of 2) -46289 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 276-8 chr1 59381802 59382048 + 2 NA intron (NM_001350794, intron 5 of 14) intron (NM_001350794, intron 5 of 14) 71893 NM_001350790 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 287-243 chr3 31887234 31887378 + 2 NA intron (NM_001174060, intron 1 of 10) intron (NM_001174060, intron 1 of 10) -94444 NM_001137674 344787 Hs.585139 NM_001137674 ENSG00000197385 ZNF860 - zinc finger protein 860 protein-coding 320-571 chr8 122658254 122658463 + 2 NA Intergenic MER4D|LTR|ERV1 35748 NR_126348 104266958 Hs.575540 NR_126348 ENSG00000253819 LINC01151 - long intergenic non-protein coding RNA 1151 ncRNA 274-127 chr14 60701992 60702182 + 2 NA Intergenic L1MA5A|LINE|L1 22264 NM_017420 51804 Hs.97849 NM_017420 ENSG00000100625 SIX4 AREC3 SIX homeobox 4 protein-coding 377-182 chr19 32608443 32608760 + 2 NA promoter-TSS (NR_145718) promoter-TSS (NR_145718) -132 NR_145718 109616972 NR_145718 ENSG00000201388 SNORA68B - small nucleolar RNA, H/ACA box 68B snoRNA 380-245 chr3 59966702 59967018 + 2 NA intron (NM_001320901, intron 5 of 6) Tigger3b|DNA|TcMar-Tigger 114049 NR_135491 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 318-3 chr1 18008166 18008456 + 2 NA Intergenic Intergenic -57346 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 259-48 chr10 58223672 58223888 + 2 NA intron (NM_152230, intron 3 of 5) THE1D|LTR|ERVL-MaLR 44114 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 540-62 chr13 56855375 56855750 + 2 NA Intergenic Intergenic -285356 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 454-334 chr9 75249110 75249495 + 2 NA Intergenic L1PA15|LINE|L1 160788 NM_012383 26578 Hs.494192 NM_012383 ENSG00000134996 OSTF1 OSF|SH3P2|bA235O14.1 osteoclast stimulating factor 1 protein-coding 388-160 chr2 74958976 74959312 + 2 NA intron (NM_019896, intron 1 of 3) intron (NM_019896, intron 1 of 3) 501 NM_019896 56655 Hs.469060 NM_019896 ENSG00000115350 POLE4 YHHQ1|p12 DNA polymerase epsilon 4, accessory subunit protein-coding 520-251 chr5 179946858 179947254 + 2 NA Intergenic Intergenic -39159 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 299-486 chr9 82014342 82014561 + 2 NA Intergenic MER77|LTR|ERVL 25679 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 338-127 chr12 60603053 60603247 + 2 NA Intergenic L1M4c|LINE|L1 913780 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 180-8 chr1 150384074 150384252 + 2 NA intron (NM_015203, intron 1 of 10) MER103C|DNA|hAT-Charlie 20052 NM_015203 23248 Hs.213666 NM_015203 ENSG00000163125 RPRD2 HSPC099|KIAA0460 regulation of nuclear pre-mRNA domain containing 2 protein-coding 702-85 chr6 11548657 11549205 + 2 NA intron (NM_001100829, intron 1 of 2) L1PA5|LINE|L1 11182 NM_001100829 100113407 Hs.146317 NM_001100829 ENSG00000205269 TMEM170B - transmembrane protein 170B protein-coding 349-326 chr3 38891374 38891648 + 2 NA intron (NM_014139, intron 15 of 25) L1M4b|LINE|L1 59050 NM_014139 11280 Hs.591657 NM_014139 ENSG00000168356 SCN11A FEPS3|HSAN7|NAV1.9|NaN|PN5|SCN12A|SNS-2 sodium voltage-gated channel alpha subunit 11 protein-coding 343-443 chr5 111438490 111438769 + 2 NA intron (NM_001744, intron 5 of 10) intron (NM_001744, intron 5 of 10) -73597 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 252-7 chr1 79737580 79737817 + 2 NA Intergenic Intergenic -730968 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 896-14 chr2 10939236 10939849 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 27608 NM_002236 3754 Hs.23735 NM_002236 ENSG00000162975 KCNF1 IK8|KCNF|KV5.1|kH1 potassium voltage-gated channel modifier subfamily F member 1 protein-coding 330-2 chr1 17930845 17931101 + 2 NA Intergenic L2a|LINE|L2 -134684 NR_125946 101927876 Hs.522954 NR_125946 ENSG00000261781 LINC01654 - long intergenic non-protein coding RNA 1654 ncRNA 316-448 chr5 97394292 97394529 + 2 NA Intergenic MER66-int|LTR|ERV1 -110286 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 318-152 chr12 119461304 119461558 + 2 NA intron (NM_178499, intron 2 of 13) intron (NM_178499, intron 2 of 13) 126702 NM_178499 160777 Hs.98188 NM_178499 ENSG00000183273 CCDC60 - coiled-coil domain containing 60 protein-coding 280-163 chr17 54205476 54205662 + 2 NA Intergenic L1ME3G|LINE|L1 382642 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 220-251 chr4 43540552 43540714 + 2 NA Intergenic (ATGT)n|Simple_repeat|Simple_repeat -48090 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 417-129 chr2 49209349 49209592 + 2 NA Intergenic Intergenic -54943 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 124-37 chr2 184824415 184824505 + 2 NA intron (NM_194250, intron 1 of 3) intron (NM_194250, intron 1 of 3) 225931 NM_194250 91752 Hs.159528 NM_194250 ENSG00000170396 ZNF804A C2orf10 zinc finger protein 804A protein-coding 222-76 chr12 236836 236998 + 2 NA intron (NM_001190997, intron 4 of 12) intron (NM_001190997, intron 4 of 12) 20382 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 239-416 chr8 121111893 121112049 + 2 NA Intergenic Intergenic -299925 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 348-72 chr10 130479005 130479227 + 2 NA Intergenic Intergenic 342707 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 664-80 chr4 65909617 65909993 + 2 NA Intergenic Intergenic -239310 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 362-16 chr1 84217997 84218289 + 2 NA intron (NM_182948, intron 9 of 9) L1MA4A|LINE|L1 36511 NM_001242862 5567 Hs.487325 NM_002731 ENSG00000142875 PRKACB PKA C-beta|PKACB protein kinase cAMP-activated catalytic subunit beta protein-coding 197-3 chr1 34460360 34460527 + 2 NA Intergenic MIR|SINE|MIR 209251 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 309-299 chr20 23140173 23140469 + 2 NA Intergenic L1M5|LINE|L1 -7685 NR_034149 200261 Hs.352228 NM_182535 ENSG00000233746 LINC00656 - long intergenic non-protein coding RNA 656 ncRNA 327-112 chr12 37411822 37412118 + 2 NA Intergenic ALR/Alpha|Satellite|centr -904804 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 225-128 chr17 65653330 65653511 + 2 NA intron (NM_001353129, intron 24 of 26) intron (NM_001353129, intron 24 of 26) -91772 NM_001363813 8313 Hs.156527 NM_004655 ENSG00000168646 AXIN2 AXIL|ODCRCS axin 2 protein-coding 337-512 chr7 28342607 28342934 + 2 NA intron (NM_182899, intron 1 of 9) intron (NM_182899, intron 1 of 9) 43449 NM_182899 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 337-456 chr5 101348240 101348468 + 2 NA Intergenic L1PB4|LINE|L1 -445072 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 348-386 chr4 188820591 188820916 + 2 NA Intergenic Intergenic 44096 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 545-229 chr8 13983501 13983973 + 2 NA Intergenic Intergenic 354047 NR_134450 102725080 Hs.130621 NR_134450 LOC102725080 - uncharacterized LOC102725080 ncRNA 370-46 chr10 56935708 56935899 + 2 NA Intergenic Intergenic 368756 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 428-239 chr5 110198308 110198555 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 315249 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 322-368 chr4 52162415 52162597 + 2 NA Intergenic Intergenic 111202 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 171-85 chr3 174169796 174169942 + 2 NA intron (NM_001365928, intron 4 of 6) L1PA16|LINE|L1 -249073 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 252-452 chr9 102237845 102238076 + 2 NA Intergenic MER101B|LTR|ERV1 -281677 NR_103830 414319 Hs.385790 NR_103830 ENSG00000204250 LINC00587 C9orf107|bA785H23.1 long intergenic non-protein coding RNA 587 ncRNA 252-336 chr5 77194065 77194300 + 2 NA intron (NM_001349752, intron 1 of 21) L1ME2|LINE|L1 13878 NM_001349752 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 641-109 chr8 78175688 78176193 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 -340400 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 134-57 chr3 104414390 104414503 + 2 NA Intergenic Intergenic -890330 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 668-12 chr11 24654841 24655277 + 2 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 158006 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 294-445 chr7 112073521 112073683 + 2 NA intron (NM_001363540, intron 1 of 52) L1MA5|LINE|L1 132797 NM_001363540 9732 Hs.654652 NM_014705 ENSG00000128512 DOCK4 - dedicator of cytokinesis 4 protein-coding 439-83 chr13 64319992 64320256 + 2 NA Intergenic L1PA16|LINE|L1 -244113 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 199-262 chrX 44377955 44378106 + 2 NA Intergenic Intergenic -34358 NM_025184 80258 Hs.521953 NM_025184 ENSG00000183690 EFHC2 MRX74|dJ1158H2.1 EF-hand domain containing 2 protein-coding 333-86 chr11 58043431 58043608 + 2 NA intron (NM_001005212, intron 1 of 2) intron (NM_001005212, intron 1 of 2) 12566 NM_001005186 219952 Hs.690432 NM_001005186 ENSG00000279051 OR6Q1 OR11-226 olfactory receptor family 6 subfamily Q member 1 (gene/pseudogene) protein-coding 438-205 chr5 3696325 3696638 + 2 NA Intergenic L1MEj|LINE|L1 100649 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 324-555 chr8 137384786 137384990 + 2 NA Intergenic L1M5|LINE|L1 28700 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 462-288 chr8 125901016 125901472 + 2 NA Intergenic L1MB2|LINE|L1 49953 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 278-3 chr1 59690483 59690646 + 2 NA intron (NM_001350790, intron 15 of 16) intron (NM_001350790, intron 15 of 16) 42732 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 207-292 chr8 84699700 84699846 + 2 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -6154 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 437-113 chr19 14620599 14620845 + 2 NA intron (NM_032571, intron 15 of 15) AluJb|SINE|Alu -1491 NR_132784 106635534 NR_132784 SNORA104 - small nucleolar RNA, H/ACA box 104 snoRNA 268-123 chr14 70951037 70951271 + 2 NA intron (NM_014982, intron 2 of 35) L1M5|LINE|L1 43695 NM_001308160 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 259-15 chr1 115847392 115847602 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -6371 NM_005599 4808 Hs.46296 NM_005599 ENSG00000177551 NHLH2 HEN2|NSCL2|bHLHa34 nescient helix-loop-helix 2 protein-coding 366-406 chr7 38922924 38923233 + 2 NA Intergenic Intergenic -13878 NM_080631 27072 Hs.592184 NM_014396 ENSG00000006715 VPS41 HVPS41|HVSP41|hVps41p VPS41 subunit of HOPS complex protein-coding 267-156 chr18 35334145 35334397 + 2 NA 3' UTR (NM_001308123, exon 4 of 4) 3' UTR (NM_001308123, exon 4 of 4) 10149 NM_006965 7572 Hs.514802 NM_006965 ENSG00000172466 ZNF24 KOX17|RSG-A|ZNF191|ZSCAN3|Zfp191 zinc finger protein 24 protein-coding 520-132 chr18 76353907 76354284 + 2 NA Intergenic MIRb|SINE|MIR -137557 NR_136504 101927989 Hs.665186 NR_136504 ENSG00000265778 LOC101927989 - uncharacterized LOC101927989 ncRNA 254-324 chr5 130031564 130031759 + 2 NA intron (NM_175856, intron 2 of 2) intron (NM_175856, intron 2 of 2) 127196 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 445-30 chr11 10115114 10115407 + 2 NA intron (NM_030962, intron 2 of 39) intron (NM_030962, intron 2 of 39) 178947 NM_030962 81846 Hs.577252 NM_030962 ENSG00000133812 SBF2 CMT4B2|DENND7B|MTMR13 SET binding factor 2 protein-coding 205-277 chr8 105788607 105788778 + 2 NA intron (NR_125796, intron 3 of 7) intron (NR_125796, intron 3 of 7) 271811 NR_125797 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 519-224 chr8 19394772 19395198 + 2 NA non-coding (NR_156444, exon 9 of 9) non-coding (NR_156444, exon 9 of 9) 81009 NM_001174159 63898 Hs.303208 NM_022071 ENSG00000104611 SH2D4A PPP1R38|SH2A SH2 domain containing 4A protein-coding 318-251 chr2 32227006 32227254 + 2 NA intron (NM_001199138, intron 8 of 8) MLT1J|LTR|ERVL-MaLR 37756 NM_001199138 58484 Hs.574741 NM_021209 ENSG00000091106 NLRC4 AIFEC|CARD12|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|CLR2.1|FCAS4|IPAF NLR family CARD domain containing 4 protein-coding 474-30 chr10 43478892 43479220 + 2 NA intron (NM_001355444, intron 3 of 3) (AT)n|Simple_repeat|Simple_repeat 41945 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 298-360 chr5 38460454 38460616 + 2 NA intron (NM_182801, intron 4 of 5) intron (NM_182801, intron 4 of 5) 14989 NM_182801 133584 Hs.20103 NM_152403 ENSG00000164318 EGFLAM AGRINL|AGRNL|PIKA EGF like, fibronectin type III and laminin G domains protein-coding 350-95 chr12 33311617 33311846 + 2 NA Intergenic L1MA4|LINE|L1 128088 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 684-96 chr5 72101055 72101555 + 2 NA Intergenic L1M5|LINE|L1 -6170 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 445-100 chr18 13845200 13845567 + 2 NA Intergenic L1MEf|LINE|L1 21234 NM_005913 4161 Hs.248145 NM_005913 ENSG00000176136 MC5R MC2 melanocortin 5 receptor protein-coding 689-22 chr12 133097314 133097820 + 2 NA intron (NM_001300777, intron 4 of 4) AluY|SINE|Alu 17364 NM_003440 7699 Hs.181552 NM_003440 ENSG00000196387 ZNF140 pHZ-39 zinc finger protein 140 protein-coding 276-312 chr3 175009371 175009586 + 2 NA intron (NM_207015, intron 1 of 13) intron (NM_207015, intron 1 of 13) 105764 NR_046390 100862679 Hs.148810 NR_046390 ENSG00000230292 NAALADL2-AS3 - NAALADL2 antisense RNA 3 ncRNA 670-74 chr3 4126187 4126576 + 2 NA Intergenic L3b|LINE|CR1 -176923 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 177-126 chr5 29323320 29323435 + 2 NA Intergenic MER46C|DNA|TcMar-Tigger 72599 NR_104628 101929681 Hs.549659 NR_104628 LINC02064 - long intergenic non-protein coding RNA 2064 ncRNA 429-301 chr8 87316223 87316503 + 2 NA intron (NM_173538, intron 8 of 10) L1ME4b|LINE|L1 449948 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 311-538 chr9 13533169 13533334 + 2 NA Intergenic Intergenic -101922 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 275-340 chr7 89574557 89574775 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -544734 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 443-270 chr6 168065782 168066176 + 2 NA intron (NR_110312, intron 6 of 15) intron (NR_110312, intron 6 of 15) 9856 NM_001122841 79981 Hs.266746 NM_024919 ENSG00000153303 FRMD1 bA164L23.1 FERM domain containing 1 protein-coding 274-217 chr2 115672414 115672562 + 2 NA intron (NM_001321912, intron 6 of 25) intron (NM_001321912, intron 6 of 25) 328673 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 357-66 chr11 56574804 56575074 + 2 NA Intergenic Intergenic 2782 NM_001004741 390167 Hs.553750 NM_001004741 ENSG00000254834 OR5M10 OR11-207 olfactory receptor family 5 subfamily M member 10 protein-coding 249-141 chr16 54857003 54857208 + 2 NA Intergenic L1MEc|LINE|L1 -8872 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 279-96 chr13 94499923 94500076 + 2 NA intron (NM_001322184, intron 1 of 8) L1MA9|LINE|L1 -20317 NM_001129889 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 275-84 chr12 34635297 34635531 + 2 NA Intergenic ALR/Alpha|Satellite|centr 612918 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 400-178 chr2 160654431 160654815 + 2 NA Intergenic L1M5|LINE|L1 -160816 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 714-12 chr11 31734370 31734935 + 2 NA intron (NM_001288726, intron 10 of 11) L1MB1|LINE|L1 66009 NM_001368930 5080 Hs.270303 NM_000280 ENSG00000007372 PAX6 AN|AN2|ASGD5|D11S812E|FVH1|MGDA|WAGR paired box 6 protein-coding 175-53 chr15 61991444 61991609 + 2 NA intron (NM_001018088, intron 17 of 81) intron (NM_001018088, intron 17 of 81) 68921 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 231-77 chr13 23443729 23443930 + 2 NA Intergenic Intergenic -10127 NM_014363 26278 Hs.159492 NM_014363 ENSG00000151835 SACS ARSACS|DNAJC29|PPP1R138|SPAX6 sacsin molecular chaperone protein-coding 368-464 chr8 118613808 118614152 + 2 NA intron (NR_109794, intron 1 of 4) Tigger18a|DNA|TcMar-Tigger -7021 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 373-191 chr2 50058256 50058555 + 2 NA intron (NM_001330093, intron 19 of 22) intron (NM_001330093, intron 19 of 22) -84202 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 496-96 chr15 25173024 25173352 + 2 NA TTS (NR_003294) TTS (NR_003294) 553 NR_003294 100033437 NR_003294 ENSG00000199712 SNORD115-2 HBII-52-2 small nucleolar RNA, C/D box 115-2 snoRNA 266-175 chr2 51656378 51656617 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) 623896 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 523-146 chr2 193063059 193063392 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 313380 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 712-39 chr2 11061461 11062123 + 2 NA Intergenic L1MEf|LINE|L1 70384 NR_040080 285150 Hs.329841 NM_182586 ENSG00000145063 FLJ33534 - uncharacterized LOC285150 ncRNA 263-53 chr10 76545032 76545172 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -342942 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 289-66 chr10 83182020 83182167 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 494996 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 533-87 chr18 37072089 37072602 + 2 NA intron (NM_001353919, intron 6 of 8) L1MDa|LINE|L1 -148531 NR_134585 105372069 Hs.666765 NR_134585 ENSG00000267039 LOC105372069 - uncharacterized LOC105372069 ncRNA 164-21 chr11 99516118 99516243 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -39965 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 233-174 chr2 103550629 103550847 + 2 NA Intergenic Intergenic -566309 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 458-173 chr3 89995173 89995544 + 2 NA Intergenic Intergenic 887737 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 367-65 chr10 118204014 118204296 + 2 NA intron (NR_026940, intron 3 of 3) intron (NR_026940, intron 3 of 3) 138169 NM_022063 63877 Hs.105575 NM_022063 ENSG00000165669 FAM204A C10orf84|bA319I23.1 family with sequence similarity 204 member A protein-coding 437-79 chr14 75350876 75351228 + 2 NA Intergenic MIRb|SINE|MIR 56648 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 361-406 chr7 3371540 3371832 + 2 NA intron (NM_152744, intron 1 of 44) L1ME4a|LINE|L1 70434 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 227-155 chr19 53109969 53110155 + 2 NA intron (NM_001352151, intron 3 of 3) intron (NM_001352151, intron 3 of 3) -6628 NM_001322134 90338 Hs.655967 NM_033288 ENSG00000170949 ZNF160 F11|HKr18|HZF5|KR18 zinc finger protein 160 protein-coding 307-182 chr17 13660193 13660460 + 2 NA Intergenic L1ME3Cz|LINE|L1 -58397 NM_006042 9955 Hs.462270 NM_006042 ENSG00000153976 HS3ST3A1 3-OST-3A|3OST3A1 heparan sulfate-glucosamine 3-sulfotransferase 3A1 protein-coding 261-63 chr11 71063476 71063716 + 2 NA intron (NM_012309, intron 8 of 24) intron (NM_012309, intron 8 of 24) 161200 NM_012309 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 338-602 chrX 57621764 57621953 + 2 NA Intergenic L1PA10|LINE|L1 30022 NM_007157 158586 Hs.156257 NM_007157 ENSG00000198455 ZXDB ZNF905|dJ83L6.1 zinc finger X-linked duplicated B protein-coding 248-302 chr5 25924282 25924519 + 2 NA Intergenic L1MEd|LINE|L1 733447 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 217-18 chr1 177737955 177738129 + 2 NA Intergenic Intergenic 37518 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 565-31 chr12 10315098 10315554 + 2 NA non-coding (NR_147040, exon 5 of 5) non-coding (NR_147040, exon 5 of 5) 7456 NR_147038 3824 Hs.562457 NM_002262 ENSG00000134539 KLRD1 CD94 killer cell lectin like receptor D1 protein-coding 265-304 chr5 53708143 53708388 + 2 NA Intergenic L1PA11|LINE|L1 111417 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 261-206 chr2 211862234 211862386 + 2 NA intron (NM_001042599, intron 3 of 26) intron (NM_001042599, intron 3 of 26) 564050 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 195-106 chr2 88042788 88042912 + 2 NA intron (NM_001304526, intron 1 of 3) L3b|LINE|CR1 12933 NM_016618 51315 Hs.469254 NM_016618 ENSG00000172086 KRCC1 CHBP2 lysine rich coiled-coil 1 protein-coding 364-122 chr14 32782437 32782641 + 2 NA intron (NM_004274, intron 12 of 13) L1MEc|LINE|L1 -156340 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 416-35 chr10 44423158 44423515 + 2 NA Intergenic Intergenic -38239 NM_001178134 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 333-30 chr1 157722220 157722527 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -21604 NR_135216 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 305-92 chr11 29401674 29401937 + 2 NA Intergenic L1M4|LINE|L1 -192608 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 518-76 chr14 37589978 37590438 + 2 NA 3' UTR (NM_004496, exon 2 of 2) 3' UTR (NM_004496, exon 2 of 2) 5041 NM_004496 3169 Hs.163484 NM_004496 ENSG00000129514 FOXA1 HNF3A|TCF3A forkhead box A1 protein-coding 524-231 chr7 32012038 32012399 + 2 NA intron (NM_001322059, intron 3 of 17) MSTB|LTR|ERVL-MaLR 58189 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 564-28 chr11 12021713 12022091 + 2 NA Intergenic L1MB5|LINE|L1 -8973 NR_135109 105376554 Hs.523483 NR_135109 ENSG00000254486 LINC02547 - long intergenic non-protein coding RNA 2547 ncRNA 303-490 chr9 32365078 32365278 + 2 NA Intergenic L1MC5|LINE|L1 -19425 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 248-304 chr5 26679940 26680091 + 2 NA Intergenic Intergenic 358571 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 584-153 chr6 84980471 84980874 + 2 NA Intergenic L2c|LINE|L2 -216074 NM_001080508 9096 Hs.251830 NM_001080508 ENSG00000112837 TBX18 CAKUT2 T-box transcription factor 18 protein-coding 174-128 chr6 73994209 73994312 + 2 NA Intergenic Intergenic -75191 NR_110856 101928516 Hs.384600 NR_110856 ENSG00000223786 LOC101928516 - uncharacterized LOC101928516 ncRNA 149-72 chr3 127098479 127098607 + 2 NA Intergenic Intergenic -94588 NM_001007534 285311 Hs.591284 NM_001007534 ENSG00000214324 C3orf56 - chromosome 3 open reading frame 56 protein-coding 518-45 chr10 122889192 122889642 + 2 NA intron (NR_027282, intron 5 of 5) intron (NR_027282, intron 5 of 5) -9776 NR_037915 100533195 Hs.647182 NR_037915 ENSG00000286088 FAM24B-CUZD1 CUZD1 FAM24B-CUZD1 readthrough ncRNA 292-150 chr15 55761427 55761658 + 2 NA Intergenic Intergenic -18390 NM_173814 283659 Hs.130957 NM_173814 ENSG00000166450 PRTG IGDCC5 protogenin protein-coding 870-14 chr2 56844661 56845178 + 2 NA Intergenic Intergenic -659149 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 630-20 chr12 59980266 59980756 + 2 NA Intergenic Intergenic 291141 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 194-134 chr3 171769229 171769374 + 2 NA intron (NM_002662, intron 1 of 26) intron (NM_002662, intron 1 of 26) 41182 NM_002662 5337 Hs.382865 NM_002662 ENSG00000075651 PLD1 CVDD phospholipase D1 protein-coding 1741 chr8 136399769 136400930 + 2 NA Intergenic L1MA5|LINE|L1 -130449 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 268-289 chr4 100618447 100618638 + 2 NA Intergenic Intergenic 56571 NR_046811 100874275 Hs.136318 NR_046811 ENSG00000250223 LINC01216 EMCN-IT3 long intergenic non-protein coding RNA 1216 ncRNA 406-188 chr3 56409611 56409983 + 2 NA intron (NR_132749, intron 2 of 17) intron (NR_132749, intron 2 of 17) 58670 NR_132749 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 349-531 chrX 102112907 102113142 + 2 NA Intergenic Intergenic -12655 NM_080390 140597 Hs.401835 NM_080390 ENSG00000184905 TCEAL2 MY0876G05|WEX1|my048 transcription elongation factor A like 2 protein-coding 351-391 chr5 104657838 104658141 + 2 NA Intergenic L1MA4A|LINE|L1 -441485 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 142-60 chr5 152101684 152101760 + 2 NA intron (NR_109876, intron 1 of 2) L1ME4a|LINE|L1 142824 NR_109876 101927115 Hs.549665 NR_109876 ENSG00000254226 LINC01933 CTB-12O2.1 long intergenic non-protein coding RNA 1933 ncRNA 249-273 chr3 144947403 144947593 + 2 NA Intergenic Intergenic 974417 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 372-135 chr14 20116021 20116272 + 2 NA Intergenic MIR3|SINE|MIR -1322 NM_001004715 390436 NM_001004715 ENSG00000176230 OR4K17 OR14-29 olfactory receptor family 4 subfamily K member 17 protein-coding 328-363 chr3 120738771 120739071 + 2 NA intron (NR_157022, intron 1 of 8) L1ME4c|LINE|L1 3759 NM_001363964 285282 Hs.444360 NM_173825 ENSG00000144840 RABL3 - RAB, member of RAS oncogene family like 3 protein-coding 349-266 chr2 112201079 112201335 + 2 NA Intergenic Intergenic 53835 NM_032494 84524 Hs.418416 NM_032494 ENSG00000144161 ZC3H8 Fliz1|ZC3HDC8 zinc finger CCCH-type containing 8 protein-coding 328-103 chr12 29946323 29946615 + 2 NA Intergenic Intergenic -161710 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 602-125 chr7 28969292 28969795 + 2 NA Intergenic L1MC5a|LINE|L1 -10424 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 662-69 chr4 79586263 79586698 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 93887 NR_038826 100506035 Hs.507664 NR_038826 ENSG00000250334 LINC00989 - long intergenic non-protein coding RNA 989 ncRNA 747-35 chr2 146468553 146469100 + 2 NA Intergenic Intergenic -118231 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 262-137 chr14 97329520 97329725 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -129194 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 343-287 chr2 211196129 211196370 + 2 NA Intergenic L1MDa|LINE|L1 578678 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 293-84 chr12 62425007 62425165 + 2 NA Intergenic L1MD2|LINE|L1 -41740 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 316-582 chr9 74096994 74097193 + 2 NA Intergenic L1MEd|LINE|L1 -274438 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 554-105 chr19 29922001 29922317 + 2 NA Intergenic Intergenic -1498 NM_001252641 8725 Hs.466391 NM_003796 ENSG00000105176 URI1 C19orf2|NNX3|PPP1R19|RMP|URI URI1 prefoldin like chaperone protein-coding 414-220 chr3 161000251 161000601 + 2 NA intron (NM_001317912, intron 3 of 4) L2|LINE|L2 104306 NM_001349161 8706 Hs.418062 NM_003781 ENSG00000169255 B3GALNT1 B3GALT3|GLCT3|GLOB|Gb4Cer|P|P1|beta3Gal-T3|galT3 beta-1,3-N-acetylgalactosaminyltransferase 1 (globoside blood group) protein-coding 267-32 chr1 233466969 233467144 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 139332 NM_032435 84451 Hs.547779 NM_032435 ENSG00000143674 MAP3K21 MLK4|dJ862P8.3 mitogen-activated protein kinase kinase kinase 21 protein-coding 318-175 chr14 79476102 79476320 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 196831 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 395-292 chr6 113868280 113868621 + 2 NA non-coding (NR_038863, exon 3 of 3) non-coding (NR_038863, exon 3 of 3) 4897 NR_038863 285758 Hs.359399 NR_038863 ENSG00000227502 LINC01268 ROCKI long intergenic non-protein coding RNA 1268 ncRNA 296-249 chr2 179780260 179780545 + 2 NA intron (NR_148056, intron 1 of 9) intron (NR_148056, intron 1 of 9) -33892 NM_001352815 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 352-361 chr4 58786974 58787296 + 2 NA Intergenic AluSc|SINE|Alu -197147 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 313-552 chr9 12779870 12780092 + 2 NA intron (NM_203403, intron 1 of 1) intron (NM_203403, intron 1 of 1) 4961 NM_203403 286343 Hs.445356 NM_203403 ENSG00000153714 LURAP1L C9orf150|HYST0841|LRAP35b|bA3L8.2 leucine rich adaptor protein 1 like protein-coding 115-43 chr7 9282764 9282840 + 2 NA Intergenic (ATAT)n|Simple_repeat|Simple_repeat -351468 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 261-376 chr8 81288778 81288935 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 8320 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 311-177 chr16 51326897 51327086 + 2 NA intron (NR_039672, intron 6 of 6) intron (NR_039672, intron 6 of 6) -175719 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 304-159 chr15 59599993 59600213 + 2 NA Intergenic Intergenic -11680 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 164-9 chr1 236674553 236674678 + 2 NA Intergenic Intergenic -11839 NM_001103 88 Hs.498178 NM_001103 ENSG00000077522 ACTN2 CMD1AA|CMH23 actinin alpha 2 protein-coding 497-149 chr20 13889909 13890371 + 2 NA intron (NR_073206, intron 6 of 20) L1M4c|LINE|L1 100474 NM_025229 80343 Hs.590879 NM_025229 ENSG00000101251 SEL1L2 C20orf50|sel-1L2 SEL1L2 adaptor subunit of ERAD E3 ligase protein-coding 513-185 chr3 90341304 90341636 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1233849 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 434-63 chr12 85936503 85936825 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR 62369 NM_006183 4922 Hs.80962 NM_006183 ENSG00000133636 NTS NMN-125|NN|NT|NT/N|NTS1 neurotensin protein-coding 353-128 chr13 75500238 75500563 + 2 NA Intergenic Intergenic -18231 NM_014832 9882 Hs.210891 NM_014832 ENSG00000136111 TBC1D4 AS160|NIDDM5 TBC1 domain family member 4 protein-coding 263-84 chr12 54882764 54882943 + 2 NA Intergenic L1PB3|LINE|L1 28337 NM_058173 118430 Hs.348419 NM_058173 ENSG00000172551 MUCL1 SBEM mucin like 1 protein-coding 493-178 chr20 20144459 20144852 + 2 NA intron (NM_015585, intron 9 of 26) L1ME1|LINE|L1 88009 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 254-384 chr7 64637115 64637303 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -28874 NM_001282359 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 292-403 chr7 34452414 34452606 + 2 NA intron (NR_033665, intron 2 of 3) MIRb|SINE|MIR -205708 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 290-92 chr11 129312175 129312416 + 2 NA Intergenic Intergenic -29131 NR_145484 399975 NM_207431 LOC399975 - uncharacterized LOC399975 ncRNA 441-234 chr6 170118662 170118992 + 2 NA Intergenic L1MEf|LINE|L1 -41815 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 649-56 chr2 175530200 175530800 + 2 NA Intergenic Intergenic -348790 NM_001002258 518 Hs.429 NM_001689 ENSG00000154518 ATP5MC3 ATP5G3|P3 ATP synthase membrane subunit c locus 3 protein-coding 278-445 chr9 7249271 7249423 + 2 NA Intergenic L1MC4a|LINE|L1 491997 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 370-6 chr1 71833758 71834083 + 2 NA intron (NR_046218, intron 1 of 2) intron (NR_046218, intron 1 of 2) 3092 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 223-380 chrX 94408112 94408273 + 2 NA Intergenic L1MEd|LINE|L1 655034 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 213-283 chr8 108096832 108097012 + 2 NA Intergenic Intergenic -13302 NM_178565 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 391-122 chr15 86684155 86684442 + 2 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -248582 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 446-85 chr12 97085518 97085882 + 2 NA Intergenic L2b|LINE|L2 178234 NM_001135175 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 376-288 chr4 97246886 97247141 + 2 NA Intergenic L1MA1|LINE|L1 -119913 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 436-262 chr6 23509517 23509911 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -616501 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 251-300 chr5 42969999 42970198 + 2 NA Intergenic Intergenic 23235 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 310-294 chr20 54476770 54476976 + 2 NA intron (NM_018431, intron 1 of 7) intron (NM_018431, intron 1 of 7) 1280 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 235-121 chr16 7624094 7624285 + 2 NA intron (NM_001142333, intron 10 of 14) intron (NM_001142333, intron 10 of 14) 291344 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 502-55 chr11 87838931 87839246 + 2 NA Intergenic Intergenic -119677 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 373-213 chr2 149750612 149750908 + 2 NA intron (NR_110240, intron 2 of 2) intron (NR_110240, intron 2 of 2) 108431 NR_145421 150596 Hs.470217 NM_153041 ENSG00000162947 LINC01931 - long intergenic non-protein coding RNA 1931 ncRNA 155-99 chr9 72331237 72331348 + 2 NA intron (NR_110952, intron 3 of 4) intron (NR_110952, intron 3 of 4) 25856 NR_110952 100507540 Hs.54957 NR_110952 ENSG00000225434 LINC01504 - long intergenic non-protein coding RNA 1504 ncRNA 324-583 chrX 93635631 93635893 + 2 NA Intergenic MLT2B4|LTR|ERVL 37816 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 346-66 chr11 26320536 26320748 + 2 NA intron (NM_001313726, intron 2 of 27) L1M2|LINE|L1 -11488 NM_031418 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 375-201 chr2 33755004 33755202 + 2 NA intron (NR_126403, intron 1 of 5) LTR40A1|LTR|ERVL -26886 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 383-282 chr4 57479676 57479901 + 2 NA Intergenic Intergenic 53916 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 249-4 chr1 37411915 37412087 + 2 NA Intergenic Intergenic 62442 NR_038842 728431 Hs.380738 NR_038842 ENSG00000233621 LINC01137 - long intergenic non-protein coding RNA 1137 ncRNA 535-121 chr2 31549657 31550034 + 2 NA intron (NM_000348, intron 1 of 4) L1MD|LINE|L1 31093 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 515-210 chr5 79036620 79036971 + 2 NA intron (NR_104003, intron 2 of 9) intron (NR_104003, intron 2 of 9) 32879 NR_104002 29958 Hs.655653 NM_013391 ENSG00000132837 DMGDH DMGDHD|ME2GLYDH dimethylglycine dehydrogenase protein-coding 207-165 chr20 60636928 60637116 + 2 NA Intergenic L2a|LINE|L2 72460 NR_039653 100616440 NR_039653 ENSG00000265617 MIR548AG2 - microRNA 548ag-2 ncRNA 1202-3 chr13 39828223 39829214 + 2 NA Intergenic L1MD2|LINE|L1 -164583 NR_036190 100422940 NR_036190 ENSG00000264171 MIR4305 - microRNA 4305 ncRNA 272-401 chr6 142128277 142128506 + 2 NA intron (NM_001324308, intron 1 of 2) L1MA9|LINE|L1 -4768 NM_001358410 100126572 NM_001358410 ENSG00000203733 GJE1 CX23 gap junction protein epsilon 1 protein-coding 249-327 chr5 25949574 25949781 + 2 NA Intergenic Intergenic 758724 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 606-47 chr14 16093032 16093555 + 2 NA Intergenic SAR|Satellite|Satellite -2507824 NM_001013354 440153 Hs.534880 NM_001013354 ENSG00000257115 OR11H12 - olfactory receptor family 11 subfamily H member 12 protein-coding 565-38 chr13 88239572 88240080 + 2 NA Intergenic L1M4|LINE|L1 96959 NR_131919 105370306 Hs.560133 NR_131919 ENSG00000231019 LINC00373 - long intergenic non-protein coding RNA 373 ncRNA 288-424 chr7 127132522 127132688 + 2 NA intron (NR_163850, intron 1 of 9) L2b|LINE|L2 -74421 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 321-25 chr1 164022647 164022918 + 2 NA Intergenic MIR|SINE|MIR -536578 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 263-26 chr1 188700807 188701003 + 2 NA Intergenic L1MA4A|LINE|L1 1257277 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 125-27 chr2 71767099 71767216 + 2 NA Intergenic L1M5|LINE|L1 300458 NM_001130983 8291 Hs.252180 NM_003494 ENSG00000135636 DYSF FER1L1|LGMD2B|LGMDR2|MMD1 dysferlin protein-coding 176-80 chr22 40309208 40309314 + 2 NA intron (NM_015088, intron 14 of 20) intron (NM_015088, intron 14 of 20) -37239 NM_001317923 158 Hs.75527 NM_000026 ENSG00000239900 ADSL AMPS|ASASE|ASL adenylosuccinate lyase protein-coding 250-282 chr3 86551298 86551466 + 2 NA Intergenic Intergenic 69439 NR_135563 101927494 Hs.385622 NR_135563 ENSG00000241328 LINC02070 - long intergenic non-protein coding RNA 2070 ncRNA 358-243 chr2 203987844 203988064 + 2 NA Intergenic L1PB1|LINE|L1 51206 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 423-288 chr8 34919166 34919537 + 2 NA Intergenic Intergenic 135430 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 320-306 chr20 20965646 20965906 + 2 NA Intergenic L2a|LINE|L2 140582 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 481-102 chr15 64197219 64197619 + 2 NA intron (NM_001329605, intron 10 of 12) L2c|LINE|L2 -34264 NM_000942 5479 Hs.434937 NM_000942 ENSG00000166794 PPIB B|CYP-S1|CYPB|HEL-S-39|OI9|SCYLP peptidylprolyl isomerase B protein-coding 701-41 chr2 59665716 59666236 + 2 NA Intergenic Intergenic 448268 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 253-316 chr5 5388386 5388577 + 2 NA Intergenic L1M5|LINE|L1 -34196 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 535-131 chr2 117251002 117251415 + 2 NA Intergenic Intergenic -563483 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 374-13 chr1 162619915 162620246 + 2 NA Intergenic Intergenic -10783 NM_001354983 4921 Hs.275757 NM_006182 ENSG00000162733 DDR2 MIG20a|NTRKR3|TKT|TYRO10|WRCN discoidin domain receptor tyrosine kinase 2 protein-coding 258-188 chr2 78708157 78708372 + 2 NA Intergenic Intergenic 162733 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 132-5 chr1 197286464 197286576 + 2 NA intron (NM_001193640, intron 1 of 9) intron (NM_001193640, intron 1 of 9) 18268 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 519-4 chr1 55347000 55347395 + 2 NA Intergenic Intergenic 121556 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 307-95 chr11 125817278 125817452 + 2 NA Intergenic Intergenic -15951 NM_001144874 399968 Hs.436215 NM_001144874 ENSG00000237353 PATE4 PATE-B prostate and testis expressed 4 protein-coding 521-169 chr3 180283318 180283753 + 2 NA Intergenic Intergenic -130638 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 338-323 chr3 7383995 7384204 + 2 NA intron (NM_000844, intron 4 of 9) AluSz6|SINE|Alu 151185 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 364-309 chr4 93237410 93237651 + 2 NA intron (NM_001286838, intron 6 of 14) intron (NM_001286838, intron 6 of 14) -591223 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 540-117 chr2 112845968 112846324 + 2 NA Intergenic Intergenic -9367 NM_000576 3553 Hs.126256 NM_000576 ENSG00000125538 IL1B IL-1|IL1-BETA|IL1F2 interleukin 1 beta protein-coding 333-306 chr20 20787215 20787477 + 2 NA Intergenic LTR16E1|LTR|ERVL -74702 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 388-93 chr12 133206800 133207145 + 2 NA 3' UTR (NM_001165882, exon 6 of 6) 3' UTR (NM_001165882, exon 6 of 6) 25477 NM_001165883 10795 Hs.124047 NM_003415 ENSG00000090612 ZNF268 HZF3 zinc finger protein 268 protein-coding 263-326 chr5 65551568 65551773 + 2 NA intron (NM_001349369, intron 4 of 10) intron (NM_001349369, intron 4 of 10) 11498 NM_001349369 64105 Hs.529778 NM_022145 ENSG00000123219 CENPK AF5alpha|CENP-K|FKSG14|P33|Solt centromere protein K protein-coding 204-180 chr22 22069186 22069337 + 2 NA Intergenic Intergenic -25327 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 376-261 chr3 143423816 143424093 + 2 NA intron (NM_173653, intron 12 of 15) L1PA16|LINE|L1 81708 NR_048544 100885796 Hs.581618 NR_048544 ENSG00000240012 SLC9A9-AS1 - SLC9A9 antisense RNA 1 ncRNA 274-212 chr2 96415085 96415354 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 79453 NM_001281710 23397 Hs.308045 NM_015341 ENSG00000121152 NCAPH BRRN1|CAP-H|CAPH|MCPH23 non-SMC condensin I complex subunit H protein-coding 288-234 chr20 61789734 61790013 + 2 NA intron (NM_001252339, intron 3 of 14) intron (NM_001252339, intron 3 of 14) -70125 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 532-220 chr6 39010295 39010746 + 2 NA intron (NM_001371, intron 88 of 91) intron (NM_001371, intron 88 of 91) -38261 NM_002062 2740 Hs.351883 NM_002062 ENSG00000112164 GLP1R GLP-1|GLP-1-R|GLP-1R glucagon like peptide 1 receptor protein-coding 311-532 chr8 139572035 139572219 + 2 NA Intergenic Intergenic 130996 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 362-113 chr12 42785393 42785699 + 2 NA Intergenic Intergenic 93330 NR_135028 105369739 Hs.126660 NR_135028 ENSG00000257114 LINC02450 - long intergenic non-protein coding RNA 2450 ncRNA 430-95 chr15 59983272 59983534 + 2 NA Intergenic L1MEf|LINE|L1 -20908 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 256-151 chr16 34595299 34595507 + 2 NA Intergenic Intergenic -213923 NR_158158 102724928 Hs.692710 NR_158158 CCNYL3 - cyclin Y like 3 (pseudogene) pseudo 213-158 chr20 20554094 20554249 + 2 NA intron (NM_020343, intron 23 of 39) L1MB7|LINE|L1 158473 NM_020343 57186 Hs.472285 NM_020343 ENSG00000188559 RALGAPA2 AS250|C20orf74|bA287B20.1|dJ1049G11|dJ1049G11.4|p220 Ral GTPase activating protein catalytic alpha subunit 2 protein-coding 476-49 chr11 63479010 63479473 + 2 NA intron (NM_054108, intron 3 of 5) intron (NM_054108, intron 3 of 5) 11926 NM_001146728 117245 Hs.410316 NM_054108 ENSG00000168004 PLAAT5 HRASLS5|HRLP5|HRSL5|PLAAT-5|RLP1|iNAT phospholipase A and acyltransferase 5 protein-coding 344-26 chr1 168433790 168433978 + 2 NA Intergenic MER33|DNA|hAT-Charlie -11228 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 174-150 chr9 7223330 7223458 + 2 NA Intergenic Intergenic 466044 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 397-113 chr17 12138820 12139116 + 2 NA intron (NM_001281435, intron 10 of 11) LTR16A|LTR|ERVL 57069 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 491-264 chr8 110210105 110210535 + 2 NA Intergenic MIR|SINE|MIR -234549 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 507-259 chr8 125287872 125288224 + 2 NA intron (NM_001349486, intron 5 of 7) AluJr|SINE|Alu -142310 NM_025195 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 158-107 chr7 54354778 54354884 + 2 NA Intergenic Intergenic 24134 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 515-190 chr4 127855084 127855519 + 2 NA Intergenic Intergenic -25592 NM_014264 10733 Hs.172052 NM_014264 ENSG00000142731 PLK4 MCCRP2|SAK|STK18 polo like kinase 4 protein-coding 292-167 chr17 10119707 10119876 + 2 NA intron (NM_201433, intron 1 of 13) intron (NM_201433, intron 1 of 13) 78815 NM_201433 8522 Hs.462214 NM_003644 ENSG00000007237 GAS7 - growth arrest specific 7 protein-coding 170-83 chr20 47304111 47304252 + 2 NA intron (NM_001281774, intron 4 of 23) intron (NM_001281774, intron 4 of 23) -14321 NR_024594 100131496 Hs.662547 NR_024594 ENSG00000267882 LOC100131496 - uncharacterized LOC100131496 ncRNA 439-52 chr11 48144509 48144756 + 2 NA intron (NM_002843, intron 12 of 24) intron (NM_002843, intron 12 of 24) 47850 NR_036119 100423000 NR_036119 ENSG00000263693 MIR3161 - microRNA 3161 ncRNA 408-102 chr14 45983899 45984139 + 2 NA Intergenic L1MA7|LINE|L1 -80140 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 204-132 chr19 40492996 40493118 + 2 NA intron (NM_020971, intron 5 of 35) intron (NM_020971, intron 5 of 35) 26056 NM_020971 57731 Hs.32706 NM_020971 ENSG00000160460 SPTBN4 CMND|NEDHND|QV|SPNB4|SPTBN3 spectrin beta, non-erythrocytic 4 protein-coding 281-68 chr11 59829263 59829530 + 2 NA 3' UTR (NM_005142, exon 9 of 9) 3' UTR (NM_005142, exon 9 of 9) 16103 NM_005142 2694 Hs.110014 NM_005142 ENSG00000134812 CBLIF GIF|IF|IFMH|INF|TCN3 cobalamin binding intrinsic factor protein-coding 603-97 chr20 13007363 13007764 + 2 NA Intergenic Intergenic -1409 NM_018327 55304 Hs.425023 NM_018327 ENSG00000172296 SPTLC3 C20orf38|LCB 3|LCB2B|LCB3|SPT 3|SPT3|SPTLC2L|dJ718P11|dJ718P11.1|hLCB2b serine palmitoyltransferase long chain base subunit 3 protein-coding 543-260 chr9 31291751 31292076 + 2 NA Intergenic L1PA16|LINE|L1 89577 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 501-25 chr10 66086315 66086705 + 2 NA intron (NM_001127384, intron 14 of 17) Charlie18a|DNA|hAT-Charlie 515085 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 349-496 chr8 65863712 65864029 + 2 NA Intergenic HERVH48-int|LTR|ERV1 -21806 NM_001242318 5150 Hs.527119 NM_002603 ENSG00000205268 PDE7A HCP1|PDE7 phosphodiesterase 7A protein-coding 324-204 chr16 60943761 60944001 + 2 NA Intergenic Intergenic 111885 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 622-32 chr14 78416047 78416599 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 12604 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 513-234 chr5 131086859 131087179 + 2 NA Intergenic L1MB3|LINE|L1 78237 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 311-307 chr20 52982239 52982420 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) 9971 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 441-250 chr7 78475194 78475546 + 2 NA intron (NM_001301128, intron 6 of 20) intron (NM_001301128, intron 6 of 20) 128128 NR_003680 399670 Hs.568045 NR_003680 ENSG00000231322 RPL13AP17 RPL13A_6_816 ribosomal protein L13a pseudogene 17 pseudo 322-334 chr3 96881167 96881484 + 2 NA intron (NM_001080448, intron 2 of 17) THE1A|LTR|ERVL-MaLR 66731 NM_001080448 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 249-300 chr4 63397769 63397901 + 2 NA Intergenic L1MEg|LINE|L1 1011615 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 279-28 chr10 14670838 14671078 + 2 NA intron (NM_031453, intron 1 of 4) intron (NM_031453, intron 1 of 4) -66557 NM_001282697 83641 Hs.446315 NM_031453 ENSG00000065809 FAM107B C10orf45|HITS family with sequence similarity 107 member B protein-coding 385-48 chr11 35843641 35843932 + 2 NA Intergenic L1MC5a|LINE|L1 -100195 NM_001304264 143458 Hs.745134 NM_174902 ENSG00000179241 LDLRAD3 LRAD3 low density lipoprotein receptor class A domain containing 3 protein-coding 373-259 chr3 62756397 62756718 + 2 NA intron (NM_003716, intron 2 of 29) L2c|LINE|L2 118859 NM_003716 8618 Hs.654933 NM_003716 ENSG00000163618 CADPS CADPS1|CAPS|CAPS1|UNC-31 calcium dependent secretion activator protein-coding 281-43 chr10 82412720 82412964 + 2 NA intron (NR_163253, intron 3 of 10) Tigger1|DNA|TcMar-Tigger -179922 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 480-138 chr2 38618948 38619256 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -16066 NM_001142650 92906 Hs.445497 NM_138394 ENSG00000143889 HNRNPLL HNRPLL|SRRF heterogeneous nuclear ribonucleoprotein L like protein-coding 320-316 chr20 45707223 45707525 + 2 NA intron (NM_172005, intron 3 of 3) L4_B_Mam|LINE|RTE-X -2194 NR_037411 100500897 NR_037411 ENSG00000266071 MIR3617 - microRNA 3617 ncRNA 169-46 chr17 54036245 54036400 + 2 NA Intergenic Intergenic 213395 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 291-10 chr1 91058977 91059147 + 2 NA Intergenic Intergenic -36807 NM_032186 84146 Hs.173001 NM_016620 ENSG00000122482 ZNF644 BM-005|MYP21|NatF|ZEP-2 zinc finger protein 644 protein-coding 241-339 chr6 131104058 131104272 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -31302 NM_016377 9465 Hs.486483 NM_004842 ENSG00000118507 AKAP7 AKAP15|AKAP18 A-kinase anchoring protein 7 protein-coding 334-457 chr6 45386384 45386632 + 2 NA intron (NM_001015051, intron 2 of 7) intron (NM_001015051, intron 2 of 7) -8574 NM_001350324 8464 Hs.368325 NM_003599 ENSG00000196284 SUPT3H SPT3|SPT3L SPT3 homolog, SAGA and STAGA complex component protein-coding 615-122 chr6 62197046 62197493 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 88956 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 449-49 chr12 9769067 9769439 + 2 NA Intergenic L1MEb|LINE|L1 -8352 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 281-256 chr20 39810655 39810926 + 2 NA Intergenic Intergenic -193671 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 446-121 chr17 58594409 58594778 + 2 NA intron (NM_031272, intron 14 of 31) AluSz|SINE|Alu -50265 NM_001368772 5414 Hs.287518 NM_004574 ENSG00000108387 SEPTIN4 ARTS|BRADEION|C17orf47|CE5B3|H5|MART|PNUTL2|SEP4|SEPT4|hCDCREL-2|hucep-7 septin 4 protein-coding 154-77 chr3 173391630 173391730 + 2 NA Intergenic Intergenic -4272 NM_001365930 22871 Hs.478289 NM_014932 ENSG00000169760 NLGN1 NL1 neuroligin 1 protein-coding 634 chr1 36598123 36598657 + 2 NA Intergenic Intergenic -115076 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 219-369 chr8 129347932 129348113 + 2 NA Intergenic L1MEf|LINE|L1 -106782 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 423-47 chr11 43144679 43144919 + 2 NA Intergenic MLT2F|LTR|ERVL 124570 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 570-170 chr6 45010968 45011403 + 2 NA intron (NM_001261823, intron 4 of 9) L1MB8|LINE|L1 186585 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 550-59 chr12 80948300 80948719 + 2 NA Intergenic L2b|LINE|L2 -10594 NM_004664 8825 Hs.144333 NM_004664 ENSG00000111052 LIN7A LIN-7A|LIN7|MALS-1|MALS1|TIP-33|VELI1 lin-7 homolog A, crumbs cell polarity complex component protein-coding 367-293 chr3 113715935 113716224 + 2 NA TTS (NM_001308445) TTS (NM_001308445) -19433 NR_111981 205717 Hs.632570 NM_001009899 ENSG00000176542 USF3 KIAA2018 upstream transcription factor family member 3 protein-coding 253-411 chr8 114528883 114529100 + 2 NA Intergenic Intergenic -1092052 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 149-25 chr12 82185635 82185739 + 2 NA Intergenic Intergenic 172700 NM_014167 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 444-13 chr1 117536330 117536687 + 2 NA Intergenic AluJb|SINE|Alu 69262 NR_121626 100996263 Hs.202533 NR_121626 ENSG00000236866 LOC100996263 - uncharacterized LOC100996263 ncRNA 348-417 chr5 91638424 91638676 + 2 NA Intergenic Intergenic -255233 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 271-97 chr12 38648824 38649078 + 2 NA Intergenic Intergenic 256640 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 302-104 chr12 44121365 44121589 + 2 NA intron (NM_001286212, intron 3 of 6) Tigger2a|DNA|TcMar-Tigger 285396 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 363-334 chr4 86378966 86379271 + 2 NA intron (NM_002753, intron 1 of 13) intron (NM_002753, intron 1 of 13) -8251 NM_001318068 5602 Hs.13438 NM_002753 ENSG00000109339 MAPK10 JNK3|JNK3A|PRKM10|SAPK1b|p493F12|p54bSAPK mitogen-activated protein kinase 10 protein-coding 285-308 chr4 76072584 76072792 + 2 NA intron (NM_001130017, intron 1 of 9) L2a|LINE|L2 -2007 NM_001130016 419 Hs.24976 NM_001179 ENSG00000156219 ART3 ARTC3 ADP-ribosyltransferase 3 protein-coding 212-3 chr1 43928956 43929123 + 2 NA intron (NM_001350619, intron 12 of 12) intron (NM_001350619, intron 12 of 12) -4281 NM_057090 9048 Hs.632404 NM_003976 ENSG00000117407 ARTN ART|ENOVIN|EVN|NBN artemin protein-coding 416-80 chr11 104723788 104724129 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -114656 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 293-182 chr2 33205835 33206032 + 2 NA intron (NM_206943, intron 7 of 33) MLT1B|LTR|ERVL-MaLR 71336 NM_000627 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 261-388 chr8 122817884 122818067 + 2 NA intron (NM_001362797, intron 1 of 4) L2b|LINE|L2 36320 NM_001362797 22882 Hs.377090 NM_014943 ENSG00000178764 ZHX2 AFR1|RAF zinc fingers and homeoboxes 2 protein-coding 307-518 chr9 85575892 85576100 + 2 NA intron (NM_015239, intron 24 of 25) intron (NM_015239, intron 24 of 25) 166033 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 493-210 chr3 103981589 103981891 + 2 NA Intergenic Intergenic -457624 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 241-222 chr20 48872781 48872989 + 2 NA Intergenic Intergenic -44886 NM_020820 57580 Hs.153310 NM_020820 ENSG00000124126 PREX1 P-REX1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 protein-coding 266-238 chr3 28541617 28541838 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -33551 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 197-211 chr8 122118435 122118566 + 2 NA Intergenic L1PB4|LINE|L1 450144 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 311-201 chr17 62910646 62910837 + 2 NA Intergenic L1ME4b|LINE|L1 -33474 NR_030363 693218 NR_030363 ENSG00000207552 MIR633 MIRN633|hsa-mir-633 microRNA 633 ncRNA 313-352 chr3 99091728 99091994 + 2 NA Intergenic Intergenic -190166 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 246-340 chr5 151334703 151334914 + 2 NA intron (NM_181776, intron 6 of 9) intron (NM_181776, intron 6 of 9) 12751 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 238-302 chr5 104838116 104838262 + 2 NA Intergenic MIR3|SINE|MIR -261285 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 250-335 chr5 26291134 26291288 + 2 NA Intergenic Intergenic 747375 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 326-356 chr3 134203532 134203785 + 2 NA intron (NM_001005861, intron 5 of 14) intron (NM_001005861, intron 5 of 14) 47086 NM_001005861 6259 Hs.654562 NM_002958 ENSG00000163785 RYK D3S3195|JTK5|JTK5A|RYK1 receptor like tyrosine kinase protein-coding 237-388 chr8 119865499 119865651 + 2 NA Intergenic Intergenic -8080 NM_001283012 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 400-6 chr1 58208575 58208805 + 2 NA intron (NM_001353980, intron 1 of 5) L1PB1|LINE|L1 41813 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 691-54 chr3 158143616 158144150 + 2 NA intron (NM_001271834, intron 3 of 8) intron (NM_001271834, intron 3 of 8) 33794 NM_001271838 51319 Hs.591283 NM_016625 ENSG00000174891 RSRC1 BM-011|MRT70|SFRS21|SRrp53 arginine and serine rich coiled-coil 1 protein-coding 322-513 chr8 32496207 32496432 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -51891 NM_013958 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 193-181 chr7 3481215 3481374 + 2 NA intron (NM_152744, intron 1 of 44) MIR|SINE|MIR 180042 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 548-200 chr6 141019909 141020353 + 2 NA Intergenic Intergenic 336317 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 529-46 chr12 41698414 41698861 + 2 NA Intergenic Intergenic -65552 NR_135040 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 417-123 chr19 34618108 34618507 + 2 NA intron (NR_027620, intron 1 of 3) MER83B-int|LTR|ERV1 -23722 NM_001025591 284402 Hs.656990 NM_001025591 ENSG00000205209 SCGB2B2 SCGB4A2|SCGBL secretoglobin family 2B member 2 protein-coding 217-165 chr1_KI270763v1_alt 858407 858558 + 2 NA intron (NM_001370074, intron 1 of 13) intron (NM_001370074, intron 1 of 13) -2800 NM_001206729 10000 Hs.498292 NM_005465 ENSG00000117020 AKT3 MPPH|MPPH2|PKB-GAMMA|PKBG|PRKBG|RAC-PK-gamma|RAC-gamma|STK-2 AKT serine/threonine kinase 3 protein-coding 254-43 chr10 84412818 84412988 + 2 NA intron (NM_018999, intron 3 of 10) L1PA11|LINE|L1 -12036 NM_001284243 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 245-124 chr14 63127409 63127626 + 2 NA Intergenic L1ME3G|LINE|L1 -76926 NM_020663 57381 Hs.656339 NM_020663 ENSG00000126785 RHOJ ARHJ|RASL7B|TC10B|TCL ras homolog family member J protein-coding 502-182 chr3 93756073 93756335 + 2 NA Intergenic ALR/Alpha|Satellite|centr 217877 NM_001314077 5627 Hs.64016 NM_000313 ENSG00000184500 PROS1 PROS|PS21|PS22|PS23|PS24|PS25|PSA|THPH5|THPH6 protein S protein-coding 222-190 chr2 141759449 141759604 + 2 NA intron (NM_018557, intron 2 of 90) L1M6|LINE|L1 372175 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 329-286 chr2 122465745 122465947 + 2 NA Intergenic Intergenic 607635 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 436-202 chr4 35629654 35630005 + 2 NA Intergenic L1MD1|LINE|L1 614110 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 919-14 chr3 23464263 23464893 + 2 NA intron (NM_001370225, intron 3 of 5) intron (NM_001370225, intron 3 of 5) 261251 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 401-275 chr5 174645290 174645533 + 2 NA Intergenic Intergenic -79171 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 230-331 chr6 157389811 157389971 + 2 NA intron (NM_024630, intron 1 of 8) L1MEf|LINE|L1 8701 NM_024630 79683 Hs.596214 NM_024630 ENSG00000175048 ZDHHC14 NEW1CP zinc finger DHHC-type containing 14 protein-coding 315-284 chr21 10724723 10724972 + 2 NA Intergenic (TCCAT)n|Simple_repeat|Simple_repeat 203333 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 267-429 chr8 121139818 121140002 + 2 NA Intergenic L2a|LINE|L2 -327864 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 266-292 chr4 82958011 82958236 + 2 NA intron (NM_001288996, intron 2 of 10) intron (NM_001288996, intron 2 of 10) 52700 NR_110254 132660 Hs.96952 NM_194282 ENSG00000189308 LIN54 CXCDC1|JC8.6|MIP120|TCX1 lin-54 DREAM MuvB core complex component protein-coding 925-25 chr5 16110498 16111222 + 2 NA intron (NM_001102562, intron 2 of 3) THE1B|LTR|ERVL-MaLR 68931 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 646-105 chr5 125947839 125948425 + 2 NA Intergenic Intergenic -231445 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 351-225 chr2 107958913 107959243 + 2 NA Intergenic Intergenic -27446 NM_001305005 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 195-9 chr1 113845465 113845568 + 2 NA intron (NM_012411, intron 9 of 18) L1MDa|LINE|L1 -11119 NR_037864 100287722 Hs.664669 NR_037864 ENSG00000226167 AP4B1-AS1 - AP4B1 antisense RNA 1 ncRNA 302-340 chr5 9521303 9521460 + 2 NA intron (NM_003966, intron 1 of 22) AluSz|SINE|Alu 10048 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 510-6 chr1 82446646 82446980 + 2 NA Intergenic L2c|LINE|L2 -456370 NR_147074 103283057 Hs.551280 NR_147074 ENSG00000230817 LINC01362 - long intergenic non-protein coding RNA 1362 ncRNA 288-34 chr1 231390680 231390855 + 2 NA intron (NM_022051, intron 1 of 4) intron (NM_022051, intron 1 of 4) 34277 NM_022051 54583 Hs.444450 NM_022051 ENSG00000135766 EGLN1 C1orf12|ECYT3|HALAH|HIF-PH2|HIFPH2|HPH-2|HPH2|PHD2|SM20|ZMYND6 egl-9 family hypoxia inducible factor 1 protein-coding 442-87 chr15 25175131 25175461 + 2 NA TTS (NR_003295) TTS (NR_003295) 369 NR_003295 100033440 NR_003295 ENSG00000199970 SNORD115-3 HBII-52-3 small nucleolar RNA, C/D box 115-3 snoRNA 347-504 chr8 68362216 68362453 + 2 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -30843 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 371-376 chr8 60212164 60212406 + 2 NA intron (NM_004056, intron 7 of 8) intron (NM_004056, intron 7 of 8) 69115 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 460-65 chr12 46020612 46021013 + 2 NA Intergenic L1PB2|LINE|L1 -30238 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 676-47 chr18 59876147 59876627 + 2 NA Intergenic Intergenic -23609 NM_021127 5366 Hs.96 NM_021127 ENSG00000141682 PMAIP1 APR|NOXA phorbol-12-myristate-13-acetate-induced protein 1 protein-coding 259-302 chr4 179873817 179874012 + 2 NA Intergenic Intergenic 1285235 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 620-77 chr20 55111117 55111516 + 2 NA Intergenic L1M5|LINE|L1 -311727 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 311-273 chr2 148842688 148842884 + 2 NA Intergenic L1PA16|LINE|L1 -32441 NM_004522 3800 Hs.435557 NM_004522 ENSG00000168280 KIF5C CDCBM2|KINN|NKHC|NKHC-2|NKHC2 kinesin family member 5C protein-coding 280-80 chr11 116464573 116464780 + 2 NA Intergenic Intergenic -174746 NR_135069 101929011 Hs.733911 NR_135069 ENSG00000237937 LINC02702 - long intergenic non-protein coding RNA 2702 ncRNA 584-54 chr17 70903293 70903758 + 2 NA Intergenic Intergenic 298654 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 404-147 chr19 28060107 28060414 + 2 NA Intergenic Intergenic -266320 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 293-4 chr1 55365484 55365678 + 2 NA Intergenic Intergenic 139940 NR_039618 100616272 NR_039618 ENSG00000265822 MIR4422 mir-4422 microRNA 4422 ncRNA 186-167 chr8 126442986 126443142 + 2 NA Intergenic L1MB8|LINE|L1 115414 NR_156466 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 362-379 chr6 99072921 99073136 + 2 NA Intergenic L1MEg|LINE|L1 -51581 NR_039672 100616347 NR_039672 ENSG00000265226 MIR548AI - microRNA 548ai ncRNA 384-99 chr13 82671823 82672046 + 2 NA Intergenic Intergenic 1210459 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 545-15 chr1 225720945 225721443 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -56619 NM_001130440 6726 Hs.511425 NM_003133 ENSG00000143742 SRP9 ALURBP signal recognition particle 9 protein-coding 366-444 chr8 88880629 88880957 + 2 NA Intergenic Intergenic -553310 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 511-85 chr16 51600365 51600719 + 2 NA Intergenic L1ME3Cz|LINE|L1 -161977 NR_110916 101927364 Hs.133120 NR_110916 ENSG00000260057 LINC01571 - long intergenic non-protein coding RNA 1571 ncRNA 285-377 chr7 7067813 7068071 + 2 NA promoter-TSS (NR_037454) promoter-TSS (NR_037454) -897 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 246-344 chr6 5931147 5931313 + 2 NA Intergenic Intergenic 72814 NM_001278711 51299 Hs.103291 NM_016588 ENSG00000124785 NRN1 NRN|dJ380B8.2 neuritin 1 protein-coding 239-102 chr14 58728267 58728504 + 2 NA Intergenic MER33|DNA|hAT-Charlie 89548 NR_046095 51339 Hs.48950 NM_016651 ENSG00000165617 DACT1 DAPPER|DAPPER1|DPR1|FRODO|HDPR1|TBS2|THYEX3 dishevelled binding antagonist of beta catenin 1 protein-coding 300-274 chr3 77755684 77755948 + 2 NA Intergenic Intergenic 293147 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 488-15 chr1 168887506 168887826 + 2 NA Intergenic L1PBa|LINE|L1 100725 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 336-167 chr14 66084611 66084802 + 2 NA Intergenic L1PB1|LINE|L1 -401665 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 260-216 chr2 123379981 123380149 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -306584 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 237-47 chr11 23898136 23898326 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -479041 NR_107021 102465860 NR_107021 ENSG00000275868 MIR8054 hsa-mir-8054 microRNA 8054 ncRNA 371-218 chr20 39440012 39440249 + 2 NA Intergenic L1MD2|LINE|L1 -215382 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 423-143 chr2 141690071 141690406 + 2 NA intron (NM_018557, intron 2 of 90) intron (NM_018557, intron 2 of 90) 441463 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 297-47 chr10 43082651 43082814 + 2 NA intron (NM_020630, intron 1 of 18) intron (NM_020630, intron 1 of 18) 5663 NM_020975 5979 Hs.350321 NM_000323 ENSG00000165731 RET CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1 ret proto-oncogene protein-coding 330-439 chr5 126797377 126797668 + 2 NA intron (NR_134488, intron 1 of 11) intron (NR_134488, intron 1 of 11) 20386 NM_005573 4001 Hs.89497 NM_005573 ENSG00000113368 LMNB1 ADLD|LMN|LMN2|LMNB lamin B1 protein-coding 530-123 chr2 57024839 57025337 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -839318 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 327-210 chr18 12315115 12315380 + 2 NA intron (NM_001303525, intron 3 of 3) L1ME4a|LINE|L1 7006 NM_001303528 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 339-237 chr19 56535299 56535488 + 2 NA Intergenic Intergenic -3555 NM_001308440 140612 Hs.14794 NM_020828 ENSG00000196867 ZFP28 mkr5 ZFP28 zinc finger protein protein-coding 391-165 chr2 45139594 45139889 + 2 NA Intergenic Intergenic 115200 NR_033831 400952 Hs.468368 NR_033831 ENSG00000205054 LINC01121 UNQ6975 long intergenic non-protein coding RNA 1121 ncRNA 362-97 chr11 98497237 98497584 + 2 NA Intergenic Intergenic -523539 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 326-214 chr18 68193749 68193982 + 2 NA Intergenic Intergenic -379043 NR_146471 101927430 Hs.621261 NR_146471 ENSG00000265555 LINC01903 - long intergenic non-protein coding RNA 1903 ncRNA 855-39 chr5 54284919 54285396 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 25416 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 280-190 chr2 44846651 44846885 + 2 NA Intergenic AluJo|SINE|Alu 92120 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 194-235 chrX 155392872 155393036 + 2 NA Intergenic L1PREC2|LINE|L1 -9756 NR_036259 100422985 NR_036259 ENSG00000221190 MIR1184-2 - microRNA 1184-2 ncRNA 259-415 chr8 127555969 127556160 + 2 NA Intergenic LTR78|LTR|ERV1 -73925 NR_117100 727677 Hs.673248 NR_024393 ENSG00000246228 CASC8 CARLO1|CARLo-1|LINC00860 cancer susceptibility 8 ncRNA 203-117 chr2 106780840 106781026 + 2 NA Intergenic Intergenic 105095 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 223-310 chr7 4470226 4470389 + 2 NA Intergenic L2a|LINE|L2 -211988 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 327-89 chr11 60680076 60680291 + 2 NA intron (NR_026946, intron 6 of 6) intron (NR_026946, intron 6 of 6) -19429 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 252-36 chr10 39514849 39515057 + 2 NA Intergenic ALR/Alpha|Satellite|centr 818357 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 363-35 chr1 246364321 246364616 + 2 NA intron (NM_001167740, intron 1 of 11) MIR|SINE|MIR 52944 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 483-134 chr2 198981809 198982206 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 475932 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 409-15 chr1 237266711 237267044 + 2 NA intron (NM_001035, intron 1 of 104) intron (NM_001035, intron 1 of 104) -204242 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 288-471 chr9 85724815 85724993 + 2 NA intron (NM_015239, intron 1 of 25) intron (NM_015239, intron 1 of 25) 17125 NM_001286717 23287 Hs.719980 NM_015239 ENSG00000135049 AGTPBP1 CCP1|CONDCA|NNA1 ATP/GTP binding protein 1 protein-coding 231-376 chr9 26815728 26815944 + 2 NA Intergenic L1MEc|LINE|L1 76966 NM_024828 79886 Hs.178357 NM_024828 ENSG00000120159 CAAP1 C9orf82|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 247-5 chr1 57440006 57440221 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) -15192 NM_001353983 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 271-34 chr1 234993186 234993419 + 2 NA Intergenic L2b|LINE|L2 -29303 NR_125945 101927851 Hs.520684 NR_125945 ENSG00000238005 LOC101927851 - uncharacterized LOC101927851 ncRNA 282-307 chr3 118024732 118024971 + 2 NA Intergenic L1PB3|LINE|L1 -333926 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 323-305 chr21 26263324 26263607 + 2 NA Intergenic L1MEf|LINE|L1 -92337 NM_001136131 351 Hs.434980 NM_000484 ENSG00000142192 APP AAA|ABETA|ABPP|AD1|APPI|CTFgamma|CVAP|PN-II|PN2|preA4 amyloid beta precursor protein protein-coding 319-389 chr4 144815522 144815749 + 2 NA Intergenic L1MA4A|LINE|L1 169479 NM_022475 64399 Hs.507991 NM_022475 ENSG00000164161 HHIP HIP hedgehog interacting protein protein-coding 254-143 chr16 75963029 75963194 + 2 NA Intergenic L1MC5|LINE|L1 -236621 NM_001355613 105371346 NM_001355613 ENSG00000283755 CPHXL - cytoplasmic polyadenylated homeobox like protein-coding 322-188 chr16 52732861 52733085 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -125998 NR_033920 643714 Hs.662199 NR_033920 ENSG00000249231 CASC16 LINC00918 cancer susceptibility 16 ncRNA 219-388 chrX 95326838 95326994 + 2 NA Intergenic L1M1|LINE|L1 -263690 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 270-119 chr15 34071706 34071942 + 2 NA Intergenic Intergenic 30038 NM_020154 56851 Hs.160565 NM_020154 ENSG00000134153 EMC7 C11orf3|C15orf24|HT022|ORF1-FL1 ER membrane protein complex subunit 7 protein-coding 534-166 chr3 128579689 128580075 + 2 NA Intergenic (ATAG)n|Simple_repeat|Simple_repeat -3796 NR_125802 23434 Hs.194283 NM_007354 ENSG00000198685 LINC01565 C3orf27|GR6 long intergenic non-protein coding RNA 1565 ncRNA 155-34 chr12 46162376 46162507 + 2 NA Intergenic L4_C_Mam|LINE|RTE-X 104075 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 314-324 chr2 226659152 226659321 + 2 NA promoter-TSS (NR_049887) promoter-TSS (NR_049887) -443 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 330-77 chr10 120398622 120398810 + 2 NA Intergenic L1MB4|LINE|L1 -43493 NM_000982 6144 Hs.381123 NM_000982 ENSG00000122026 RPL21 HYPT12|L21 ribosomal protein L21 protein-coding 616-167 chr7 131739847 131740248 + 2 NA Intergenic L1MA5|LINE|L1 -170173 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 203-81 chr16 26014209 26014371 + 2 NA intron (NM_006040, intron 1 of 1) L2a|LINE|L2 -10947 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 515-275 chr9 27505439 27505776 + 2 NA intron (NM_024761, intron 1 of 3) intron (NM_024761, intron 1 of 3) -18707 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 236-70 chr11 60999150 60999324 + 2 NA intron (NM_001254751, intron 1 of 10) intron (NM_001254751, intron 1 of 10) 27557 NR_045638 923 Hs.744366 NM_006725 ENSG00000013725 CD6 TP120 CD6 molecule protein-coding 195-132 chr22 24718483 24718651 + 2 NA TTS (NR_045648) TTS (NR_045648) -45934 NR_001283 7152 Hs.381281 NR_001283 TOP1P2 - DNA topoisomerase I pseudogene 2 pseudo 238-426 chrX 49659901 49660106 + 2 NA Intergenic AluJr|SINE|Alu 35981 NM_003785 8712 Hs.128231 NM_003785 ENSG00000068985 PAGE1 AL5|CT16.3|GAGE-9|GAGEB1|PAGE-1 PAGE family member 1 protein-coding 251-256 chr3 181154004 181154196 + 2 NA intron (NR_075091, intron 2 of 7) intron (NR_075091, intron 2 of 7) -21044 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 349-426 chr5 118706697 118706975 + 2 NA Intergenic Intergenic 110648 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 319-176 chr16 56168102 56168348 + 2 NA intron (NR_027078, intron 2 of 4) intron (NR_027078, intron 2 of 4) 22869 NR_027078 283856 Hs.707433 NR_027078 ENSG00000246379 LOC283856 - uncharacterized LOC283856 ncRNA 440-63 chr14 32376019 32376269 + 2 NA intron (NM_004274, intron 1 of 13) MER103C|DNA|hAT-Charlie 46846 NM_004274 9472 Hs.509083 NM_004274 ENSG00000151320 AKAP6 ADAP100|ADAP6|AKAP100|PRKA6|mAKAP A-kinase anchoring protein 6 protein-coding 344-399 chr5 128088423 128088739 + 2 NA intron (NM_001046, intron 1 of 26) intron (NM_001046, intron 1 of 26) 4815 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 173-105 chr4 149249881 149249967 + 2 NA intron (NR_125887, intron 9 of 12) intron (NR_125887, intron 9 of 12) 95629 NR_125887 101927849 Hs.434595 NR_125887 ENSG00000248210 LINC02355 - long intergenic non-protein coding RNA 2355 ncRNA 418-177 chr3 193504782 193505039 + 2 NA intron (NM_032279, intron 2 of 29) intron (NM_032279, intron 2 of 29) -48303 NR_121666 101929198 Hs.450092 NR_046726 ATP13A4-AS1 - ATP13A4 antisense RNA 1 ncRNA 320-106 chr11 130358367 130358565 + 2 NA intron (NR_148980, intron 1 of 6) L1MB4|LINE|L1 43473 NR_148980 646383 Hs.155288 NM_001039787 ENSG00000175773 ZBTB44-DT - ZBTB44 divergent transcript ncRNA 371-424 chrX 44059937 44060293 + 2 NA Intergenic L1MB2|LINE|L1 -86725 NM_000266 4693 Hs.522615 NM_000266 ENSG00000124479 NDP EVR2|FEVR|ND norrin cystine knot growth factor NDP protein-coding 311-306 chr20 52652132 52652405 + 2 NA Intergenic Intergenic 31430 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 513-151 chr2 165636815 165637240 + 2 NA intron (NM_024969, intron 2 of 4) (TTGTT)n|Simple_repeat|Simple_repeat 64691 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 282-73 chr11 57186009 57186212 + 2 NA intron (NM_001005210, intron 1 of 1) MIR|SINE|MIR 4157 NM_001005210 219527 Hs.199853 NM_001005210 ENSG00000183908 LRRC55 - leucine rich repeat containing 55 protein-coding 304-127 chr13 82214427 82214612 + 2 NA Intergenic L1MA7|LINE|L1 -987536 NR_047494 100861546 Hs.539621 NR_047494 ENSG00000260094 LINC00564 - long intergenic non-protein coding RNA 564 ncRNA 149-55 chr2 88523541 88523622 + 2 NA Intergenic L1MB3|LINE|L1 -1068 NM_152670 200523 Hs.132104 NM_152670 ENSG00000172073 TEX37 C2orf51|TSC21 testis expressed 37 protein-coding 322-296 chr20 53235909 53236168 + 2 NA intron (NM_001193421, intron 1 of 2) intron (NM_001193421, intron 1 of 2) 50755 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 232-112 chr15 51754758 51754921 + 2 NA intron (NM_001142885, intron 1 of 8) MER103C|DNA|hAT-Charlie 3242 NM_001142885 29767 Hs.513734 NM_014548 ENSG00000128872 TMOD2 N-TMOD|NTMOD tropomodulin 2 protein-coding 267-393 chr7 51504078 51504299 + 2 NA Intergenic L1ME3Cz|LINE|L1 -110932 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 368-495 chrX 88583835 88584080 + 2 NA Intergenic L1PA15|LINE|L1 -163268 NM_001184771 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 241-256 chr4 14386446 14386639 + 2 NA Intergenic Intergenic 274574 NR_033931 152742 Hs.135435 NR_033931 ENSG00000248698 LINC01085 - long intergenic non-protein coding RNA 1085 ncRNA 388-315 chr6 143209413 143209724 + 2 NA intron (NM_001366354, intron 3 of 4) MLT1D|LTR|ERVL-MaLR 44786 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 402-68 chr12 71249736 71250016 + 2 NA Intergenic Intergenic -91877 NM_004616 7103 Hs.170563 NM_004616 ENSG00000127324 TSPAN8 CO-029|TM4SF3 tetraspanin 8 protein-coding 213-14 chr1 165569724 165569906 + 2 NA intron (NR_026744, intron 3 of 6) intron (NR_026744, intron 3 of 6) 12340 NR_026744 400794 Hs.374847 NR_026744 ENSG00000237463 LRRC52-AS1 - LRRC52 antisense RNA 1 ncRNA 286-300 chr3 191500656 191500928 + 2 NA intron (NR_120606, intron 1 of 6) intron (NR_120606, intron 1 of 6) 39629 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 293-386 chr6 168750640 168750798 + 2 NA Intergenic L1PB1|LINE|L1 213663 NR_136250 105378146 Hs.343631 NR_136248 LOC105378146 - uncharacterized LOC105378146 ncRNA 352-342 chr3 193757793 193758022 + 2 NA Intergenic Intergenic 86102 NR_146718 105374285 Hs.552531 NR_146718 LINC02038 - long intergenic non-protein coding RNA 2038 ncRNA 528-235 chr7 34378415 34378873 + 2 NA intron (NR_033665, intron 3 of 3) MER57A-int|LTR|ERV1 -279574 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 411-288 chr8 68586576 68586821 + 2 NA intron (NR_146186, intron 7 of 12) Charlie7|DNA|hAT-Charlie -255207 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 607-57 chr17 61032218 61032805 + 2 NA intron (NM_001330413, intron 17 of 25) intron (NM_001330413, intron 17 of 25) 335193 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 498-256 chr7 104442687 104443154 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 114264 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 796-25 chr2 16678014 16678603 + 2 NA Intergenic L1MEd|LINE|L1 -12474 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 264-261 chr22 49650109 49650352 + 2 NA intron (NM_001289922, intron 1 of 5) intron (NM_001289922, intron 1 of 5) 7289 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 218-156 chr2 80310511 80310669 + 2 NA intron (NM_001282600, intron 1 of 11) intron (NM_001282600, intron 1 of 11) -2789 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 423-109 chr18 22714902 22715225 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack 71774 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 468-230 chr4 97144654 97144982 + 2 NA Intergenic Intergenic -222108 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 248-386 chr7 96807800 96807976 + 2 NA Intergenic Intergenic -97997 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 381-211 chr2 153767732 153768086 + 2 NA Intergenic L1PB4|LINE|L1 -104013 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 382-81 chr12 108948511 108948819 + 2 NA intron (NM_018711, intron 6 of 15) L1MC4|LINE|L1 68573 NM_001917 1610 Hs.113227 NM_001917 ENSG00000110887 DAO DAAO|DAMOX|OXDA D-amino acid oxidase protein-coding 343-107 chr12 79271983 79272244 + 2 NA intron (NM_001291901, intron 3 of 9) intron (NM_001291901, intron 3 of 9) -147144 NR_031700 100302136 NR_031700 ENSG00000221788 MIR1252 MIRN1252|hsa-mir-1252 microRNA 1252 ncRNA 249-283 chr3 187463290 187463514 + 2 NA Intergenic Intergenic 16356 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 260-473 chrX 150576489 150576736 + 2 NA intron (NM_000252, intron 1 of 14) L1MC5|LINE|L1 8015 NM_000252 4534 Hs.655056 NM_000252 ENSG00000171100 MTM1 CNM|MTMX|XLMTM myotubularin 1 protein-coding 341-229 chr2 16870811 16871057 + 2 NA Intergenic Intergenic -205100 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 494-281 chr8 51766883 51767231 + 2 NA intron (NM_144651, intron 1 of 22) L1M4|LINE|L1 42388 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 267-31 chr1 207916789 207917024 + 2 NA Intergenic L1M5|LINE|L1 -5781 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 332-80 chr11 13550248 13550564 + 2 NA Intergenic L1PBa|LINE|L1 -54231 NM_001316352 5741 Hs.37045 NM_000315 ENSG00000152266 PTH PTH1 parathyroid hormone protein-coding 441-61 chr12 119140554 119140904 + 2 NA intron (NM_194286, intron 8 of 12) intron (NM_194286, intron 8 of 12) 35755 NR_134996 105370024 Hs.679286 NR_134996 ENSG00000256884 LOC105370024 - uncharacterized LOC105370024 ncRNA 314-462 chr5 55768445 55768611 + 2 NA intron (NM_001166534, intron 2 of 14) L1PA15|LINE|L1 1643 NM_001166534 54514 Hs.223581 NM_019039 ENSG00000152670 DDX4 VASA DEAD-box helicase 4 protein-coding 490-144 chr2 75232805 75233160 + 2 NA Intergenic Intergenic -33462 NM_001058 6869 Hs.633301 NM_001058 ENSG00000115353 TACR1 NK1R|NKIR|SPR|TAC1R tachykinin receptor 1 protein-coding 234-188 chr2 137042648 137042808 + 2 NA intron (NM_001316349, intron 2 of 27) intron (NM_001316349, intron 2 of 27) 277183 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 468-253 chr5 73528906 73529193 + 2 NA Intergenic HAL1|LINE|L1 30624 NM_001207 689 Hs.591768 NM_001207 ENSG00000145741 BTF3 BETA-NAC|BTF3a|BTF3b|NACB basic transcription factor 3 protein-coding 383-54 chr11 76069251 76069483 + 2 NA intron (NM_003369, intron 13 of 14) intron (NM_003369, intron 13 of 14) 137135 NM_004626 7481 Hs.108219 NM_004626 ENSG00000085741 WNT11 HWNT11 Wnt family member 11 protein-coding 335-48 chr10 39208795 39209003 + 2 NA Intergenic LTR6A|LTR|ERV1 512303 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 221-253 chr5 154170279 154170457 + 2 NA Intergenic Intergenic -20365 NM_198321 55568 Hs.631797 NM_017540 ENSG00000164574 GALNT10 GALNACT10|PPGALNACT10|PPGANTASE10 polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 237-150 chr18 68269124 68269307 + 2 NA Intergenic Intergenic 445893 NM_001350516 54495 Hs.440534 NM_019022 ENSG00000166479 TMX3 PDIA13|TXNDC10 thioredoxin related transmembrane protein 3 protein-coding 346-242 chr2 76842397 76842690 + 2 NA intron (NR_146416, intron 1 of 1) Tigger5|DNA|TcMar-Tigger -143422 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 360-392 chr5 179434373 179434570 + 2 NA Intergenic Intergenic 82240 NR_149047 100128340 Hs.710582 NR_149047 LOC100128340 - uncharacterized LOC100128340 ncRNA 201-19 chr1 222458690 222458836 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 89341 NM_024746 79802 Hs.665660 NM_024746 ENSG00000143512 HHIPL2 KIAA1822L HHIP like 2 protein-coding 258-245 chr22 27388536 27388716 + 2 NA Intergenic Intergenic 77975 NR_134581 100507657 Hs.537371 NR_134581 ENSG00000226741 LINC02554 - long intergenic non-protein coding RNA 2554 ncRNA 247-52 chr11 10338821 10339023 + 2 NA intron (NR_103765, intron 2 of 3) AluJo|SINE|Alu 30609 NR_103765 100130460 Hs.501890 NR_103765 CAND1.11 - uncharacterized LOC100130460 ncRNA 390-391 chr8 112614603 112614852 + 2 NA intron (NM_001363185, intron 20 of 66) intron (NM_001363185, intron 20 of 66) -28766 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 373-93 chr12 79720136 79720499 + 2 NA Intergenic MER104|DNA|TcMar-Tc2 -29220 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 353-340 chr3 126330906 126331226 + 2 NA Intergenic Intergenic 26342 NM_014079 28999 Hs.272215 NM_014079 ENSG00000163884 KLF15 KKLF Kruppel like factor 15 protein-coding 380-108 chr13 67557612 67557849 + 2 NA Intergenic L1MB7|LINE|L1 185343 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 252-120 chr14 76889491 76889670 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 63172 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 461-102 chr17 32726623 32726933 + 2 NA intron (NM_015194, intron 14 of 21) intron (NM_015194, intron 14 of 21) 150346 NM_001303279 4642 Hs.602063 NM_015194 ENSG00000176658 MYO1D PPP1R108|myr4 myosin ID protein-coding 195-133 chr22 25135584 25135755 + 2 NA intron (NM_001145206, intron 4 of 10) intron (NM_001145206, intron 4 of 10) -22977 NR_038941 100128531 Hs.662126 NR_038941 ENSG00000203280 LOC100128531 - uncharacterized LOC100128531 ncRNA 319-235 chr2 49137087 49137389 + 2 NA intron (NM_000145, intron 1 of 9) L1MB7|LINE|L1 17277 NM_181446 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 517-249 chr7 42486657 42487019 + 2 NA Intergenic L2b|LINE|L2 219609 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 443-29 chr1 236278070 236278440 + 2 NA intron (NM_019891, intron 1 of 15) L1MEd|LINE|L1 3703 NM_019891 56605 Hs.558519 NM_019891 ENSG00000086619 ERO1B ERO1LB|Ero1beta endoplasmic reticulum oxidoreductase 1 beta protein-coding 329-282 chr2 108810895 108811157 + 2 NA intron (NM_144978, intron 7 of 14) L1MA5|LINE|L1 24255 NM_144978 165055 Hs.362702 NM_144978 ENSG00000163006 CCDC138 - coiled-coil domain containing 138 protein-coding 254-51 chr11 11826290 11826481 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -15038 NM_001330208 55031 Hs.577256 NM_017944 ENSG00000170242 USP47 TRFP ubiquitin specific peptidase 47 protein-coding 267-399 chr7 64602815 64603064 + 2 NA intron (NR_077227, intron 2 of 2) BSR/Beta|Satellite|Satellite 20329 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 313-553 chr9 26220828 26221099 + 2 NA Intergenic Intergenic 154288 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 223-301 chr6 40633191 40633367 + 2 NA Intergenic Intergenic -45915 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 310-335 chr3 99581732 99581930 + 2 NA Intergenic Intergenic -56763 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 672-106 chr7 88328310 88328795 + 2 NA Intergenic Intergenic -21658 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 360-476 chr8 125892388 125892619 + 2 NA Intergenic L1PB4|LINE|L1 58694 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 263-9 chr1 77910278 77910438 + 2 NA intron (NM_001172309, intron 1 of 11) L1MC1|LINE|L1 -20819 NR_103535 374987 Hs.632414 NM_199343 ENSG00000235927 NEXN-AS1 C1orf118 NEXN antisense RNA 1 ncRNA 124 chr1 65912033 65912151 + 2 NA intron (NM_002600, intron 1 of 16) intron (NM_002600, intron 1 of 16) -1153 NM_001297441 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 621-78 chr3 87476822 87477272 + 2 NA Intergenic L1MEg1|LINE|L1 -200463 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 201-98 chr16 86107577 86107767 + 2 NA Intergenic L2a|LINE|L2 -88509 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 290-337 chr5 38583650 38583856 + 2 NA intron (NR_103554, intron 1 of 8) THE1B|LTR|ERVL-MaLR 11652 NM_002310 3977 Hs.133421 NM_002310 ENSG00000113594 LIFR CD118|LIF-R|SJS2|STWS|SWS LIF receptor subunit alpha protein-coding 426-70 chr13 101450779 101451087 + 2 NA Intergenic Intergenic -1660 NM_001271755 9358 Hs.696554 NM_004791 ENSG00000198542 ITGBL1 OSCP|TIED integrin subunit beta like 1 protein-coding 556-241 chr9 80111609 80112041 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 136802 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 278-424 chr8 118169159 118169381 + 2 NA intron (NR_146234, intron 4 of 5) intron (NR_146234, intron 4 of 5) -57451 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 389-207 chr20 48002394 48002637 + 2 NA Intergenic LOR1a|LTR|ERV1 -12398 NR_110027 101927457 Hs.445823 NR_110027 LINC01522 - long intergenic non-protein coding RNA 1522 ncRNA 226-269 chr5 8192646 8192813 + 2 NA Intergenic Intergenic 264835 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 328-360 chr3 106525915 106526234 + 2 NA Intergenic L1PA8A|LINE|L1 -656673 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 262-160 chr16 62657737 62657870 + 2 NA Intergenic Intergenic -621365 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 490-305 chr8 130877990 130878291 + 2 NA intron (NM_001115, intron 8 of 17) MIRb|SINE|MIR 162769 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 221-206 chr3 194012493 194012640 + 2 NA intron (NR_136180, intron 3 of 3) intron (NR_136180, intron 3 of 3) -8907 NR_033944 647323 Hs.652830 NR_033944 ENSG00000214146 LINC02026 - long intergenic non-protein coding RNA 2026 ncRNA 354-56 chr10 83385902 83386193 + 2 NA Intergenic L1MA2|LINE|L1 291042 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 392-166 chr2 210737586 210737843 + 2 NA Intergenic Intergenic 120143 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 197-131 chr3 24669730 24669876 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -159520 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 231-187 chr2 218195800 218195948 + 2 NA Intergenic Intergenic -21315 NM_152862 10109 Hs.529303 NM_005731 ENSG00000163466 ARPC2 ARC34|PNAS-139|PRO2446|p34-Arc actin related protein 2/3 complex subunit 2 protein-coding 192-71 chr15 56358042 56358145 + 2 NA Intergenic Intergenic -7331 NM_001286449 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 305-211 chr18 2968016 2968222 + 2 NA intron (NM_014646, intron 1 of 19) L4_C_Mam|LINE|RTE-X -21496 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 226-181 chr2 137605274 137605439 + 2 NA intron (NM_001316349, intron 17 of 27) MIR|SINE|MIR 322576 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 552-130 chr3 5464492 5464867 + 2 NA Intergenic Intergenic -214424 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 388-283 chr5 81689047 81689406 + 2 NA intron (NM_012446, intron 1 of 16) L1MA3|LINE|L1 62027 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 266-194 chr2 144026363 144026543 + 2 NA intron (NM_001354355, intron 7 of 13) AluSx|SINE|Alu 89386 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 560-31 chr12 2183614 2183977 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 39686 NR_046578 100874234 Hs.372570 NR_046578 ENSG00000256025 CACNA1C-AS4 - CACNA1C antisense RNA 4 ncRNA 450-244 chr5 87663732 87664009 + 2 NA intron (NR_149089, intron 1 of 1) intron (NR_149089, intron 1 of 1) 1828 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 490-269 chr7 64195555 64195908 + 2 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -11472 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 196-3 chr1 20274440 20274628 + 2 NA Intergenic MIRb|SINE|MIR -16341 NM_001039500 127731 Hs.205178 NM_144623 ENSG00000158816 VWA5B1 - von Willebrand factor A domain containing 5B1 protein-coding 418-195 chr4 102858861 102859087 + 2 NA intron (NM_181890, intron 1 of 7) L1M3c|LINE|L1 9919 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 586-21 chr10 78452771 78453213 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy 185650 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 238-318 chr6 45118392 45118622 + 2 NA intron (NM_001350325, intron 2 of 10) L2c|LINE|L2 79263 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 325-348 chr3 74265329 74265556 + 2 NA intron (NM_020872, intron 21 of 21) intron (NM_020872, intron 21 of 21) 255698 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 354-168 chr17 13182325 13182675 + 2 NA Intergenic Intergenic 124260 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 328-151 chr14 60766546 60766825 + 2 NA intron (NM_001177963, intron 1 of 6) AluSc5|SINE|Alu 31924 NM_002431 4331 Hs.509523 NM_002431 ENSG00000020426 MNAT1 CAP35|MAT1|RNF66|TFB3 MNAT1 component of CDK activating kinase protein-coding 508-237 chr8 96434350 96434659 + 2 NA Intergenic L1ME4a|LINE|L1 -47066 NR_125828 102724804 Hs.571415 NR_125828 ENSG00000253105 LOC102724804 - uncharacterized LOC102724804 ncRNA 223-241 chr4 33603250 33603408 + 2 NA Intergenic L1PA13|LINE|L1 436564 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 483-72 chr15 24771211 24771652 + 2 NA Intergenic L1ME1|LINE|L1 -52177 NM_001349460 6638 Hs.564847 NM_003097 ENSG00000128739 SNRPN HCERN3|PWCR|RT-LI|SM-D|SMN|SNRNP-N|SNURF-SNRPN|sm-N small nuclear ribonucleoprotein polypeptide N protein-coding 654-125 chr8 112944175 112944627 + 2 NA intron (NM_001363185, intron 7 of 66) L2|LINE|L2 300908 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 248-209 chr2 200030266 200030419 + 2 NA Intergenic Intergenic -74851 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 142-50 chr21 35240691 35240800 + 2 NA Intergenic Intergenic -191447 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 246-91 chr12 32493672 32493908 + 2 NA intron (NM_001304481, intron 1 of 16) L2a|LINE|L2 7818 NM_001330374 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 332-372 chr4 42672484 42672693 + 2 NA Intergenic Intergenic -15483 NM_001105529 10396 Hs.435052 NM_006095 ENSG00000124406 ATP8A1 ATPASEII|ATPIA|ATPP2 ATPase phospholipid transporting 8A1 protein-coding 309-365 chr3 151225284 151225530 + 2 NA intron (NM_014879, intron 1 of 2) MSTD|LTR|ERVL-MaLR -22191 NM_013308 29909 Hs.549152 NM_013308 ENSG00000174946 GPR171 H963 G protein-coupled receptor 171 protein-coding 293-308 chr4 90556079 90556357 + 2 NA intron (NM_207491, intron 5 of 7) intron (NM_207491, intron 5 of 7) 321187 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 206-130 chr2 169363097 169363253 + 2 NA promoter-TSS (NM_004525) promoter-TSS (NM_004525) -641 NM_004525 4036 Hs.657729 NM_004525 ENSG00000081479 LRP2 DBS|GP330|LRP-2 LDL receptor related protein 2 protein-coding 657-25 chr12 114437447 114438096 + 2 NA Intergenic Intergenic -29329 NM_000192 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 161-141 chrX 105182356 105182461 + 2 NA intron (NM_017416, intron 2 of 10) L1MA4A|LINE|L1 38285 NM_031274 56157 Hs.567543 NM_031274 ENSG00000268629 TEX13A - testis expressed 13A protein-coding 500-98 chr15 61809360 61809757 + 2 NA Intergenic Intergenic 79640 NR_146448 100506530 Hs.42265 NR_146448 ENSG00000259284 LINC02349 - long intergenic non-protein coding RNA 2349 ncRNA 367-481 chr9 119990841 119991040 + 2 NA Intergenic MER44A|DNA|TcMar-Tigger 55880 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 226-158 chr2 44598087 44598307 + 2 NA intron (NM_024766, intron 3 of 10) Charlie4a|DNA|hAT-Charlie 236250 NM_024766 79823 Hs.468349 NM_024766 ENSG00000143919 CAMKMT C2orf34|CLNMT|CaM KMT|Cam|KMT calmodulin-lysine N-methyltransferase protein-coding 751-23 chr17 52087148 52087594 + 2 NA intron (NM_001082533, intron 2 of 9) AluSz6|SINE|Alu 71343 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 512-80 chr14 80435724 80436037 + 2 NA intron (NR_038355, intron 8 of 8) L1M1|LINE|L1 -204823 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 150-49 chr2 52737183 52737303 + 2 NA Intergenic Intergenic -34628 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 577-47 chr12 1345935 1346296 + 2 NA intron (NR_027948, intron 15 of 19) HAL1b|LINE|L1 -154376 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 306-523 chr8 126960769 126960969 + 2 NA Intergenic Intergenic -52285 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 275-178 chr2 29823113 29823292 + 2 NA intron (NM_004304, intron 1 of 28) THE1B|LTR|ERVL-MaLR 98384 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 606-177 chr9 137924587 137925177 + 2 NA intron (NM_001243812, intron 6 of 45) MER54B|LTR|ERVL 22178 NR_132977 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 448-199 chr5 6925679 6925944 + 2 NA Intergenic L1MC1|LINE|L1 -97890 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 413-140 chr2 76695343 76695699 + 2 NA Intergenic L1MC3|LINE|L1 -290444 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 265-377 chr7 140151137 140151352 + 2 NA intron (NM_030647, intron 1 of 19) intron (NM_030647, intron 1 of 19) 25739 NM_030647 80853 Hs.308710 NM_030647 ENSG00000006459 KDM7A JHDM1D lysine demethylase 7A protein-coding 589-155 chr8 78960765 78961281 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 123494 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 436-290 chr7 107125523 107125788 + 2 NA intron (NM_002736, intron 3 of 10) intron (NM_002736, intron 3 of 10) -43306 NM_001244262 26959 Hs.162032 NM_012257 ENSG00000105856 HBP1 - HMG-box transcription factor 1 protein-coding 216-169 chr2 63146562 63146747 + 2 NA intron (NR_148704, intron 18 of 18) AluSc5|SINE|Alu -27112 NR_036635 100169989 Hs.606147 NR_036635 ENSG00000242412 DBIL5P2 ELP1P diazepam binding inhibitor-like 5 pseudogene 2 pseudo 914-22 chr3 105130230 105130928 + 2 NA Intergenic L1PA16|LINE|L1 -236134 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 226-366 chr8 136369476 136369602 + 2 NA Intergenic L2c|LINE|L2 -161259 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 413-329 chrUn_KI270751v1 143355 143643 + 2 NA NA L1PA4|LINE|L1 NA NA 221-233 chr5 12648841 12649044 + 2 NA intron (NR_033383, intron 2 of 3) intron (NR_033383, intron 2 of 3) -18917 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 255-315 chr5 9339677 9339825 + 2 NA intron (NM_003966, intron 3 of 22) intron (NM_003966, intron 3 of 22) -171582 NR_109935 101929338 Hs.675861 NR_109935 ENSG00000251370 SEMA5A-AS1 CTD-2201E9.1 SEMA5A antisense RNA 1 ncRNA 441-230 chr6 98289500 98289846 + 2 NA Intergenic L1MA4|LINE|L1 265142 NR_031579 100302164 NR_031579 ENSG00000238367 MIR2113 hsa-mir-2113 microRNA 2113 ncRNA 364-219 chr2 115517869 115518157 + 2 NA intron (NM_001321912, intron 5 of 25) MSTB1|LTR|ERVL-MaLR 174198 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 311-406 chr5 44660285 44660478 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 148412 NR_109863 100506674 Hs.575213 NR_109862 MRPS30-DT BRCAT54 MRPS30 divergent transcript ncRNA 536-224 chr8 24531632 24532027 + 2 NA intron (NR_125808, intron 1 of 5) intron (NR_125808, intron 1 of 5) 16789 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 478-314 chrX 8765203 8765670 + 2 NA Intergenic Intergenic -33299 NM_000216 3730 Hs.521869 NM_000216 ENSG00000011201 ANOS1 ADMLX|HH1|HHA|KAL|KAL1|KALIG-1|KMS|WFDC19 anosmin 1 protein-coding 361-290 chr3 96508624 96508930 + 2 NA Intergenic Intergenic 148813 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 327-95 chr11 101287280 101287529 + 2 NA Intergenic L1MB7|LINE|L1 -157591 NM_001271162 5241 Hs.32405 NM_000926 ENSG00000082175 PGR NR3C3|PR progesterone receptor protein-coding 329-143 chr13 69005865 69006139 + 2 NA Intergenic Intergenic -120677 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 276-441 chr8 46793555 46793771 + 2 NA Intergenic Intergenic -47223 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 494-70 chr14 78376501 78376867 + 2 NA intron (NR_073547, intron 4 of 20) L1MDa|LINE|L1 -27035 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 207-9 chr1 66137417 66137545 + 2 NA intron (NM_001037340, intron 1 of 14) intron (NM_001037340, intron 1 of 14) -86763 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 208-152 chr21 23683268 23683378 + 2 NA Intergenic Intergenic -298488 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 513-262 chr7 41062525 41062976 + 2 NA Intergenic Intergenic -38854 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 532-258 chr8 4550613 4551000 + 2 NA intron (NM_033225, intron 2 of 69) MER117|DNA|hAT-Charlie 444108 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 457-270 chr9 35187726 35188000 + 2 NA intron (NM_006377, intron 1 of 38) HUERS-P3b-int|LTR|ERV1 25854 NM_006377 10497 Hs.493791 NM_006377 ENSG00000198722 UNC13B MUNC13|UNC13|Unc13h2 unc-13 homolog B protein-coding 451-100 chr18 10744308 10744726 + 2 NA intron (NM_022068, intron 28 of 51) intron (NM_022068, intron 28 of 51) 15132 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 468-96 chr15 97586420 97586842 + 2 NA Intergenic L1ME4a|LINE|L1 -25933 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 535-18 chr1 180405034 180405480 + 2 NA intron (NM_032360, intron 5 of 7) intron (NM_032360, intron 5 of 7) 33133 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 372-319 chr3 22770398 22770731 + 2 NA Intergenic Intergenic 432014 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 394-187 chr2 161810385 161810679 + 2 NA intron (NM_001354443, intron 4 of 25) L1PA16|LINE|L1 186116 NM_001354441 57282 Hs.333958 NM_022058 ENSG00000144290 SLC4A10 NBCn2|NCBE solute carrier family 4 member 10 protein-coding 582-133 chr6 40009293 40009703 + 2 NA Intergenic L1MA4|LINE|L1 -75036 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 358-150 chr16 72672767 72673018 + 2 NA Intergenic L1MB4|LINE|L1 -7922 NR_159371 101927957 Hs.637253 NR_126330 ENSG00000261008 LINC01572 - long intergenic non-protein coding RNA 1572 ncRNA 340-568 chr9 69078433 69078684 + 2 NA 3' UTR (NM_181425, exon 5 of 5) 3' UTR (NM_181425, exon 5 of 5) -42706 NM_001170414 9414 Hs.50382 NM_004817 ENSG00000119139 TJP2 C9DUPq21.11|DFNA51|DUP9q21.11|PFIC4|X104|ZO2 tight junction protein 2 protein-coding 601-113 chr4 99732117 99732496 + 2 NA Intergenic MER41-int|LTR|ERV1 -77627 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 291-261 chr20 35843854 35844017 + 2 NA intron (NM_016436, intron 3 of 17) intron (NM_016436, intron 3 of 17) 71920 NM_016436 51230 Hs.517044 NM_016436 ENSG00000025293 PHF20 C20orf104|GLEA2|HCA58|NZF|TDRD20A|TZP PHD finger protein 20 protein-coding 327-283 chr2 190559046 190559315 + 2 NA Intergenic Intergenic -24458 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 457-57 chr13 82989933 82990240 + 2 NA Intergenic Intergenic 892307 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 584-160 chr7 28991003 28991418 + 2 NA intron (NR_038965, intron 1 of 4) intron (NR_038965, intron 1 of 4) 11243 NR_038965 100506497 Hs.586328 NR_038965 ENSG00000272568 LOC100506497 - uncharacterized LOC100506497 ncRNA 545-14 chr1 219253985 219254399 + 2 NA Intergenic L1PA14|LINE|L1 79223 NM_001300772 127018 Hs.657617 NM_138794 ENSG00000143353 LYPLAL1 Q96AV0 lysophospholipase like 1 protein-coding 247-207 chr2 107680405 107680624 + 2 NA Intergenic Intergenic -73598 NR_126370 104326057 Hs.585967 NR_126369 ENSG00000232991 GACAT1 LINC00876 gastric cancer associated transcript 1 ncRNA 666-107 chr7 6697528 6698114 + 2 NA intron (NM_006956, intron 2 of 5) intron (NM_006956, intron 2 of 5) 9126 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 112-43 chr7 15921061 15921148 + 2 NA Intergenic Intergenic 232726 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 392-363 chrX 104590628 104591003 + 2 NA intron (NM_017416, intron 1 of 10) MIR3|SINE|MIR 24616 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 278-441 chr8 136121430 136121682 + 2 NA Intergenic L1M5|LINE|L1 -409242 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 352-108 chr12 66290183 66290459 + 2 NA Intergenic Intergenic -12172 NM_001370285 92797 Hs.505941 NM_033647 ENSG00000127311 HELB DHB|hDHB DNA helicase B protein-coding 411-302 chr8 144440282 144440651 + 2 NA TTS (NR_109770) TTS (NR_109770) 3974 NM_013432 4796 Hs.675285 NM_013432 ENSG00000160949 TONSL IKBR|NFKBIL2 tonsoku like, DNA repair protein protein-coding 401-251 chr5 21242848 21243147 + 2 NA Intergenic MERX|DNA|TcMar-Tigger -216483 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 382-332 chr5 89837094 89837384 + 2 NA Intergenic HAL1|LINE|L1 179481 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 459-128 chr19 57733930 57734332 + 2 NA Intergenic L1M1|LINE|L1 -6507 NM_001321376 79891 Hs.180402 NM_024833 ENSG00000083814 ZNF671 - zinc finger protein 671 protein-coding 186-71 chr19 37639989 37640098 + 2 NA intron (NM_001320666, intron 5 of 5) Tigger13a|DNA|TcMar-Tigger 15422 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 212-217 chr3 103192213 103192375 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 331822 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 262-162 chr16 82298726 82298904 + 2 NA Intergenic MIRb|SINE|MIR -128591 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 342-23 chr1 108078684 108078946 + 2 NA Intergenic Intergenic -113635 NM_006113 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 308-459 chr7 34625454 34625635 + 2 NA intron (NR_033664, intron 2 of 4) MLT2A2|LTR|ERVL -32674 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 336-411 chr4 56668959 56669160 + 2 NA intron (NM_032495, intron 1 of 3) MIR3|SINE|MIR 12237 NM_032495 84525 Hs.619396 NM_032495 ENSG00000171476 HOPX CAMEO|HOD|HOP|LAGY|NECC1|OB1|SMAP31|TOTO HOP homeobox protein-coding 253-176 chr2 28425349 28425575 + 2 NA Intergenic LTR81A|LTR|Gypsy -30790 NR_103831 403150 Hs.562970 NR_103831 ENSG00000229951 FLJ31356 - uncharacterized protein FLJ31356 ncRNA 199-252 chr8 142579006 142579154 + 2 NA Intergenic Intergenic 35399 NM_015193 23237 Hs.40888 NM_015193 ENSG00000198576 ARC Arg3.1|hArc activity regulated cytoskeleton associated protein protein-coding 201-212 chr6 7971161 7971326 + 2 NA intron (NR_037616, intron 4 of 12) MER47B|DNA|TcMar-Tigger -14859 NR_027712 206426 Hs.676966 NR_027712 PIP5K1P1 - phosphatidylinositol-4-phosphate 5-kinase type 1 pseudogene 1 pseudo 698-93 chrX 42493530 42494058 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR 284369 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 223-277 chr5 50898931 50899093 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR 71175 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 660-118 chr9 38266337 38266718 + 2 NA Intergenic L1MA4|LINE|L1 -126175 NM_000692 219 Hs.436219 NM_000692 ENSG00000137124 ALDH1B1 ALDH5|ALDHX aldehyde dehydrogenase 1 family member B1 protein-coding 247-155 chr17 53651088 53651242 + 2 NA Intergenic Intergenic -171762 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 529-34 chr11 79304637 79304943 + 2 NA intron (NM_001098816, intron 1 of 33) intron (NM_001098816, intron 1 of 33) 97319 NR_030598 100126333 NR_030598 ENSG00000211997 MIR708 MIRN708|hsa-mir-708 microRNA 708 ncRNA 131-54 chr4 46321458 46321581 + 2 NA intron (NM_001286827, intron 3 of 9) intron (NM_001286827, intron 3 of 9) 67860 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 264-311 chr5 19474040 19474183 + 2 NA intron (NM_001349559, intron 12 of 12) intron (NM_001349559, intron 12 of 12) 412161 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 510-254 chr7 9786485 9786949 + 2 NA Intergenic MER54B|LTR|ERVL 152447 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 343-201 chr18 3927727 3928051 + 2 NA intron (NM_001242761, intron 3 of 11) intron (NM_001242761, intron 3 of 11) -34464 NR_102696 101410534 Hs.141055 NR_102696 ENSG00000263878 DLGAP1-AS4 - DLGAP1 antisense RNA 4 ncRNA 314-236 chr18 9305466 9305739 + 2 NA Intergenic L1PBa|LINE|L1 -29171 NM_020648 57045 Hs.514685 NM_020648 ENSG00000128791 TWSG1 TSG twisted gastrulation BMP signaling modulator 1 protein-coding 155-91 chr6 126860863 126860992 + 2 NA Intergenic Intergenic -257744 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 232-183 chr2 122344358 122344553 + 2 NA Intergenic Intergenic 588804 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 393-235 chr4 31551126 31551445 + 2 NA intron (NR_149121, intron 1 of 2) L1MC4|LINE|L1 44741 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 297-44 chr10 20718772 20719017 + 2 NA Intergenic L1M5|LINE|L1 166924 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 363-464 chr8 138434589 138434813 + 2 NA intron (NM_001362965, intron 1 of 19) intron (NM_001362965, intron 1 of 19) 62560 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 495-108 chr2 67808809 67809197 + 2 NA intron (NR_110271, intron 2 of 2) L1PB1|LINE|L1 16559 NR_110271 101927701 Hs.348697 NR_110271 ENSG00000237013 LINC01812 - long intergenic non-protein coding RNA 1812 ncRNA 242-302 chr5 63503476 63503704 + 2 NA Intergenic L1PA14|LINE|L1 458702 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 487-115 chr18 5804481 5804844 + 2 NA Intergenic L1MB7|LINE|L1 -36033 NR_039772 100616244 NR_039772 ENSG00000272380 MIR3976 - microRNA 3976 ncRNA 219-312 chr6 64115996 64116176 + 2 NA intron (NM_001292009, intron 31 of 43) L1M2a|LINE|L1 309250 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 265-173 chr2 31793317 31793561 + 2 NA TTS (NR_146994) TTS (NR_146994) 10541 NR_146994 105374449 Hs.580386 NR_146994 ENSG00000223647 LINC01946 - long intergenic non-protein coding RNA 1946 ncRNA 580-102 chr20 59803016 59803405 + 2 NA intron (NM_080672, intron 7 of 12) L1MEc|LINE|L1 82000 NM_183246 116154 Hs.473218 NM_080672 ENSG00000087495 PHACTR3 C20orf101|H17739|PPP1R123|SCAPIN1|SCAPININ phosphatase and actin regulator 3 protein-coding 340-206 chr17 71134222 71134447 + 2 NA intron (NR_104152, intron 2 of 3) MLT1D|LTR|ERVL-MaLR 67845 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 341-452 chr5 153545064 153545266 + 2 NA intron (NM_001258020, intron 3 of 16) intron (NM_001258020, intron 3 of 16) 52993 NM_001258021 2890 Hs.519693 NM_000827 ENSG00000155511 GRIA1 GLUH1|GLUR1|GLURA|GluA1|HBGR1 glutamate ionotropic receptor AMPA type subunit 1 protein-coding 479-219 chr6 118185103 118185532 + 2 NA intron (NM_001029858, intron 2 of 7) MamGypLTR1d|LTR|Gypsy 99414 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 341-299 chr20 43779131 43779405 + 2 NA Intergenic Intergenic -52266 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 282-407 chr6 96513461 96513647 + 2 NA Intergenic Intergenic -8252 NM_015323 23376 Hs.149367 NM_015323 ENSG00000014123 UFL1 KIAA0776|Maxer|NLBP|RCAD UFM1 specific ligase 1 protein-coding 243-46 chr10 63843788 63844001 + 2 NA Intergenic LTR16B|LTR|ERVL -322004 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 319-500 chr7 45606917 45607217 + 2 NA intron (NM_001281768, intron 3 of 9) intron (NM_001281768, intron 3 of 9) 32699 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 336-578 chr9 69886628 69886871 + 2 NA intron (NR_131756, intron 4 of 5) intron (NR_131756, intron 4 of 5) 65932 NM_001308085 138255 Hs.444459 NM_001010940 ENSG00000204711 C9orf135 - chromosome 9 open reading frame 135 protein-coding 332-559 chr9 7816596 7816832 + 2 NA Intergenic Intergenic -16936 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 339-348 chr3 7664415 7664642 + 2 NA intron (NM_000844, intron 8 of 9) L1PA7|LINE|L1 -129244 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 607-48 chr15 81900009 81900476 + 2 NA Intergenic Intergenic 145776 NM_032246 84206 Hs.104744 NM_032246 ENSG00000183496 MEX3B MEX-3B|RKHD3|RNF195 mex-3 RNA binding family member B protein-coding 329-230 chr18 4939256 4939563 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -141773 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 288-355 chr6 16660170 16660398 + 2 NA intron (NM_000332, intron 3 of 8) intron (NM_000332, intron 3 of 8) 99900 NR_152114 6310 Hs.434961 NM_000332 ENSG00000124788 ATXN1 ATX1|D6S504E|SCA1 ataxin 1 protein-coding 453-234 chr6 130635467 130635876 + 2 NA Intergenic Intergenic -191734 NM_001195597 100507203 Hs.388715 NM_001195597 ENSG00000256162 SMLR1 - small leucine rich protein 1 protein-coding 741-70 chr8 63307806 63308328 + 2 NA Intergenic Intergenic 139064 NM_001277814 253943 Hs.491861 NM_152758 ENSG00000185728 YTHDF3 - YTH N6-methyladenosine RNA binding protein 3 protein-coding 118-55 chr7 105475583 105475695 + 2 NA intron (NM_001318164, intron 9 of 15) intron (NM_001318164, intron 9 of 15) 32881 NM_001318163 54517 Hs.520619 NM_019042 ENSG00000091127 PUS7 IDDABS pseudouridine synthase 7 protein-coding 258-32 chr1 218581512 218581720 + 2 NA intron (NR_031644, intron 2 of 6) L1MEf|LINE|L1 71521 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 289-215 chr2 35136159 35136337 + 2 NA Intergenic L1ME1|LINE|L1 -335157 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 689-77 chr5 23126803 23127297 + 2 NA Intergenic Intergenic -273706 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 339-329 chr21 21896122 21896442 + 2 NA Intergenic MER70A|LTR|ERVL 149297 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 466-162 chr22 32219193 32219516 + 2 NA intron (NM_014227, intron 14 of 14) L1MC5|LINE|L1 14239 NR_149072 110806273 Hs.382171 NR_149072 ENSG00000242082 SLC5A4-AS1 - SLC5A4 antisense RNA 1 ncRNA 485-280 chr8 47136151 47136553 + 2 NA Intergenic L1MA4A|LINE|L1 -52955 NR_037168 100287846 Hs.21550 NR_037168 LOC100287846 - uncharacterized LOC100287846 ncRNA 485-224 chr5 51791484 51791810 + 2 NA Intergenic L1PA16|LINE|L1 -216384 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 359-438 chr7 8464266 8464458 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 30753 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 473-293 chr9 76094191 76094559 + 2 NA intron (NR_120409, intron 7 of 19) intron (NR_120409, intron 7 of 19) 203702 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 309-67 chr10 118973879 118974148 + 2 NA Intergenic MLT1N2|LTR|ERVL-MaLR -55701 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 599-67 chr2 229240249 229240664 + 2 NA intron (NM_001330158, intron 1 of 3) intron (NM_001330158, intron 1 of 3) -8364 NM_001330156 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 632-110 chr7 134567394 134567875 + 2 NA intron (NR_160301, intron 2 of 3) MIRb|SINE|MIR 18524 NR_160302 441282 Hs.729418 NM_001080538 ENSG00000227471 AKR1B15 AKR1B10L|AKR1B10L, AK1R1B7|AKR1R1B7 aldo-keto reductase family 1 member B15 protein-coding 284-5 chr1 72956289 72956471 + 2 NA Intergenic Intergenic -349790 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 195-108 chr2 103418768 103418892 + 2 NA Intergenic L1ME2z|LINE|L1 -434401 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 523-149 chr20 9558154 9558548 + 2 NA intron (NM_020341, intron 7 of 10) AluSx1|SINE|Alu -43353 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 346-396 chr5 98702323 98702618 + 2 NA Intergenic L1PB1|LINE|L1 -66162 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 242-386 chr8 31468366 31468589 + 2 NA Intergenic Tigger3|DNA|TcMar-Tigger -171275 NM_013962 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 387-321 chr6 155153934 155154204 + 2 NA intron (NM_012454, intron 6 of 25) intron (NM_012454, intron 6 of 25) -62897 NM_001010927 26230 Hs.586279 NM_012454 ENSG00000146426 TIAM2 STEF|TIAM-2 T cell lymphoma invasion and metastasis 2 protein-coding 360-253 chr2 212042118 212042365 + 2 NA intron (NM_001042599, intron 2 of 26) intron (NM_001042599, intron 2 of 26) 384119 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 305-419 chr5 8527285 8527469 + 2 NA Intergenic Intergenic 66452 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 175-120 chr4 154053393 154053529 + 2 NA Intergenic L1MA5A|LINE|L1 -264378 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 228-382 chrX 46149697 46149884 + 2 NA Intergenic L1MD1|LINE|L1 177884 NR_110388 101927574 Hs.350952 NR_110388 ENSG00000236751 LINC01186 ZNF674-1 long intergenic non-protein coding RNA 1186 ncRNA 368-329 chr4 61076796 61077144 + 2 NA Intergenic L1PB4|LINE|L1 -66686 NR_147148 105377249 Hs.575120 NR_147148 ENSG00000240152 LINC02271 - long intergenic non-protein coding RNA 2271 ncRNA 296-427 chr7 4304222 4304506 + 2 NA Intergenic (ATTC)n|Simple_repeat|Simple_repeat -169527 NR_158215 105375131 NR_158215 LOC105375131 - uncharacterized LOC105375131 ncRNA 487-36 chr10 33315193 33315538 + 2 NA intron (NM_001244973, intron 2 of 16) intron (NM_001244973, intron 2 of 16) 19302 NM_003873 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 547-214 chr7 28191067 28191424 + 2 NA intron (NR_034097, intron 2 of 3) intron (NR_034097, intron 2 of 3) -10450 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 638-13 chr10 33620026 33620573 + 2 NA Intergenic Charlie18a|DNA|hAT-Charlie 152381 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 291-215 chr2 65913108 65913365 + 2 NA Intergenic Intergenic 445092 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 345-237 chr19 57473014 57473225 + 2 NA 3' UTR (NM_001330613, exon 3 of 3) 3' UTR (NM_001330613, exon 3 of 3) 4447 NM_001330613 400720 Hs.388810 NM_001024596 ENSG00000197128 ZNF772 - zinc finger protein 772 protein-coding 328-598 chr9 12810534 12810780 + 2 NA intron (NR_125775, intron 1 of 3) MIRb|SINE|MIR 3732 NR_125775 101929467 Hs.586443 NR_125775 ENSG00000235448 LURAP1L-AS1 - LURAP1L antisense RNA 1 ncRNA 205-161 chr2 222382166 222382327 + 2 NA Intergenic Intergenic -41742 NM_001320834 130367 Hs.210043 NM_152386 ENSG00000163082 SGPP2 SPP2|SPPase2 sphingosine-1-phosphate phosphatase 2 protein-coding 317-448 chr7 36383761 36383960 + 2 NA exon (NM_001100425, exon 2 of 7) exon (NM_001100425, exon 2 of 7) -6002 NM_018685 54443 Hs.62180 NM_018685 ENSG00000011426 ANLN FSGS8|Scraps|scra anillin actin binding protein protein-coding 460-11 chr1 125061795 125062157 + 2 NA Intergenic ALR/Alpha|Satellite|centr 3542864 NR_003955 647121 Hs.697682 NR_003955 ENSG00000231752 EMBP1 - embigin pseudogene 1 pseudo 374-61 chr11 127304294 127304634 + 2 NA intron (NR_120580, intron 1 of 2) LTR16E2|LTR|ERVL 33394 NR_120580 101929497 Hs.737442 NR_120580 ENSG00000273409 LINC02712 - long intergenic non-protein coding RNA 2712 ncRNA 378-248 chr2 183949552 183949793 + 2 NA Intergenic Intergenic -429303 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 448-194 chr4 175522545 175522869 + 2 NA Intergenic L1MA9|LINE|L1 264969 NM_001261448 2823 Hs.75819 NM_005277 ENSG00000150625 GPM6A GPM6|M6A glycoprotein M6A protein-coding 261-140 chr17 34689076 34689227 + 2 NA Intergenic L1ME2z|LINE|L1 108402 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 363-65 chr10 111042590 111042926 + 2 NA Intergenic AluSz6|SINE|Alu -34271 NM_000681 150 Hs.249159 NM_000681 ENSG00000150594 ADRA2A ADRA2|ADRA2R|ADRAR|ALPHA2AAR|ZNF32 adrenoceptor alpha 2A protein-coding 294-489 chr9 24097942 24098126 + 2 NA Intergenic Intergenic -247433 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 351-367 chr5 6121706 6121991 + 2 NA Intergenic Intergenic 215444 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 501-5 chr1 75493089 75493572 + 2 NA intron (NM_001320285, intron 2 of 25) intron (NM_001320285, intron 2 of 25) 117784 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 390-53 chr11 22062087 22062383 + 2 NA Intergenic Intergenic -130850 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 360-417 chr6 118393216 118393481 + 2 NA Intergenic L1MB7|LINE|L1 -108025 NR_002730 23629 Hs.648050 NR_002730 BRD7P3 BP75 bromodomain containing 7 pseudogene 3 pseudo 618-22 chr11 112685566 112686072 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -130017 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 530-278 chr9 104335882 104336207 + 2 NA Intergenic Intergenic 65815 NR_135141 105376194 Hs.553289 NR_135141 LOC105376194 - uncharacterized LOC105376194 ncRNA 293-229 chr20 12854595 12854836 + 2 NA Intergenic L1MD1|LINE|L1 82248 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 800-19 chr14 46471910 46472395 + 2 NA intron (NR_102700, intron 1 of 1) intron (NR_102700, intron 1 of 1) 793 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 335-269 chr2 162030395 162030632 + 2 NA intron (NM_001935, intron 10 of 25) intron (NM_001935, intron 10 of 25) 43702 NM_001935 1803 Hs.368912 NM_001935 ENSG00000197635 DPP4 ADABP|ADCP2|CD26|DPPIV|TP103 dipeptidyl peptidase 4 protein-coding 124-62 chr5 98465905 98465982 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -302689 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 287-150 chr15 97454539 97454781 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 67151 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 309-275 chr2 144705840 144706116 + 2 NA intron (NR_033870, intron 1 of 4) intron (NR_033870, intron 1 of 4) 38011 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 623-28 chr12 14604912 14605362 + 2 NA intron (NR_120465, intron 2 of 5) L1ME1|LINE|L1 -37254 NM_024829 79887 Hs.131933 NM_024829 ENSG00000121316 PLBD1 - phospholipase B domain containing 1 protein-coding 373-26 chr1 168983179 168983544 + 2 NA intron (NR_104091, intron 3 of 4) LTR85a|LTR|Gypsy? 103644 NR_104091 101978719 Hs.517849 NR_104091 ENSG00000203601 LINC00970 - long intergenic non-protein coding RNA 970 ncRNA 442-204 chr4 30265159 30265474 + 2 NA Intergenic MLT2B4|LTR|ERVL -455053 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 213-260 chr7 24686738 24686905 + 2 NA intron (NM_016447, intron 12 of 12) intron (NM_016447, intron 12 of 12) 70643 NM_001127453 1687 Hs.520708 NM_004403 ENSG00000105928 GSDME DFNA5|ICERE-1 gasdermin E protein-coding 483-235 chr7 18340272 18340618 + 2 NA intron (NM_001321896, intron 1 of 12) L1MEc|LINE|L1 50353 NM_001321896 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 596-51 chr12 108184861 108185304 + 2 NA intron (NM_001304447, intron 2 of 9) MER58C|DNA|hAT-Charlie 53296 NM_001304447 9671 Hs.143591 NM_014653 ENSG00000075035 WSCD2 - WSC domain containing 2 protein-coding 352-507 chr7 92879384 92879580 + 2 NA intron (NR_110087, intron 2 of 2) L1M3b|LINE|L1 -42855 NM_001145306 1021 Hs.119882 NM_001259 ENSG00000105810 CDK6 MCPH12|PLSTIRE cyclin dependent kinase 6 protein-coding 321-617 chrX 110573898 110574120 + 2 NA Intergenic Intergenic 53697 NR_002718 6998 Hs.592361 NR_002718 ENSG00000225366 TDGF1P3 CR-3|CRIPTO|CRIPTO-3|CRIPTO3|TDGF1|TDGF2|TDGF3 teratocarcinoma-derived growth factor 1 pseudogene 3 pseudo 302-289 chr3 89529227 89529479 + 2 NA Intergenic Intergenic 421732 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 191-65 chr15 97593589 97593751 + 2 NA Intergenic Intergenic -32972 NR_110756 101927310 Hs.560324 NR_110756 ENSG00000259582 LOC101927310 - uncharacterized LOC101927310 ncRNA 258-366 chr7 41596716 41596961 + 2 NA Intergenic L1M4b|LINE|L1 -97081 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 470-280 chr8 135195686 135196069 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -38254 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 444-247 chr7 131311187 131311592 + 2 NA intron (NR_125364, intron 4 of 5) LTR49-int|LTR|ERV1 16390 NR_125364 100506881 Hs.660830 NR_125364 ENSG00000236753 MKLN1-AS MKLN1-AS2 MKLN1 antisense RNA ncRNA 504-53 chr12 37990720 37991083 + 2 NA Intergenic ALR/Alpha|Satellite|centr -325873 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 710-74 chr5 9730455 9730967 + 2 NA intron (NR_027112, intron 5 of 12) THE1B|LTR|ERVL-MaLR -100360 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 389-148 chr18 65193534 65193864 + 2 NA Intergenic Intergenic -556553 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 242-267 chr4 81182715 81182929 + 2 NA intron (NR_125908, intron 3 of 4) L1ME3A|LINE|L1 17882 NR_125908 101928942 Hs.664002 NR_125908 ENSG00000251059 LOC101928942 - uncharacterized LOC101928942 ncRNA 626-67 chr2 98280265 98280683 + 2 NA intron (NM_001345864, intron 16 of 21) intron (NM_001345864, intron 16 of 21) -65681 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 219-277 chr5 30372144 30372303 + 2 NA Intergenic Intergenic 491663 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 553-115 chr2 68475672 68476192 + 2 NA intron (NM_173545, intron 1 of 9) intron (NM_173545, intron 1 of 9) 8347 NM_173545 200558 Hs.720369 NM_173545 ENSG00000169621 APLF APFL|C2orf13|PALF|Xip1|ZCCHH1 aprataxin and PNKP like factor protein-coding 315-97 chr12 18566663 18566925 + 2 NA intron (NM_001288774, intron 28 of 32) intron (NM_001288774, intron 28 of 32) 170715 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 215-164 chr2 217267181 217267315 + 2 NA Intergenic Intergenic -15485 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 256-18 chr1 114115626 114115817 + 2 NA intron (NM_001366223, intron 3 of 7) MIRb|SINE|MIR 36719 NM_205848 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 372-41 chr10 37322413 37322698 + 2 NA intron (NR_104061, intron 3 of 4) HUERS-P3-int|LTR|ERV1 13369 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 375-90 chr11 134688153 134688394 + 2 NA Intergenic Intergenic -47672 NR_147836 729305 Hs.148365 NR_147836 ENSG00000251226 LINC02714 - long intergenic non-protein coding RNA 2714 ncRNA 412-32 chr10 71150282 71150512 + 2 NA Intergenic Intergenic -62173 NM_001244889 219699 Hs.522997 NM_170744 ENSG00000107731 UNC5B UNC5H2|p53RDL1 unc-5 netrin receptor B protein-coding 324-337 chr3 6758609 6758865 + 2 NA intron (NR_110125, intron 2 of 3) L1M5|LINE|L1 46712 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 483-215 chr5 123690543 123690973 + 2 NA Intergenic L1ME3A|LINE|L1 145341 NM_004384 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 631-24 chr11 14576681 14577181 + 2 NA intron (NM_148976, intron 2 of 10) L1PA5|LINE|L1 -56486 NM_001143937 5682 Hs.102798 NM_002786 ENSG00000129084 PSMA1 HC2|HEL-S-275|NU|PROS30 proteasome subunit alpha 1 protein-coding 322-20 chr1 96909439 96909657 + 2 NA Intergenic L2|LINE|L2 -186375 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 161-110 chr7 110340550 110340669 + 2 NA Intergenic Intergenic -380396 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 513-203 chr4 59703779 59704229 + 2 NA Intergenic Intergenic 690431 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 138-38 chr2 38043416 38043521 + 2 NA intron (NM_144713, intron 10 of 10) L1MCa|LINE|L1 -7127 NR_102712 101410544 Hs.591566 NR_102712 RMDN2-AS1 - RMDN2 antisense RNA 1 ncRNA 335-355 chr3 96598682 96598961 + 2 NA Intergenic L1M5|LINE|L1 -215773 NM_001278301 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 309-326 chr22 25476852 25477023 + 2 NA Intergenic MIRb|SINE|MIR 21291 NR_106875 102466198 NR_106875 ENSG00000277872 MIR6817 hsa-mir-6817 microRNA 6817 ncRNA 196-131 chr2 113906184 113906335 + 2 NA intron (NM_001277140, intron 1 of 11) L1MB3|LINE|L1 -15267 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 358-434 chr7 42675826 42676172 + 2 NA intron (NR_110833, intron 1 of 2) intron (NR_110833, intron 1 of 2) 30448 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 438-238 chr6 50981654 50981899 + 2 NA Intergenic Intergenic 162905 NM_003221 7021 Hs.33102 NM_003221 ENSG00000008196 TFAP2B AP-2B|AP2-B|PDA2 transcription factor AP-2 beta protein-coding 295-260 chr20 49581091 49581305 + 2 NA Intergenic Intergenic -13061 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 575-51 chr14 63773648 63774210 + 2 NA Intergenic Intergenic -45864 NM_030791 81537 Hs.24678 NM_030791 ENSG00000126821 SGPP1 SPP-1|SPPase1 sphingosine-1-phosphate phosphatase 1 protein-coding 522-185 chr3 197727435 197727892 + 2 NA intron (NM_001145642, intron 1 of 20) intron (NM_001145642, intron 1 of 20) 9241 NM_014687 9711 Hs.478868 NM_014687 ENSG00000145016 RUBCN KIAA0226|RUBICON|SCAR15 rubicon autophagy regulator protein-coding 459-174 chr3 7822722 7823031 + 2 NA Intergenic L1MA4A|LINE|L1 193431 NR_110131 101927394 Hs.517767 NR_110131 ENSG00000227110 LOC101927394 - uncharacterized LOC101927394 ncRNA 618-63 chr2 129647980 129648418 + 2 NA Intergenic Intergenic 229292 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 294-321 chr4 30650865 30651103 + 2 NA Intergenic Intergenic -69385 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 830-29 chr21 30661560 30662154 + 2 NA Intergenic Intergenic 18993 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 433-253 chr6 146171943 146172213 + 2 NA intron (NM_001278065, intron 3 of 9) intron (NM_001278065, intron 3 of 9) 142880 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 271-222 chr2 217682952 217683195 + 2 NA intron (NR_026597, intron 1 of 12) intron (NR_026597, intron 1 of 12) 73520 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 302-193 chr2 3016978 3017134 + 2 NA intron (NR_110228, intron 3 of 6) L1MA5|LINE|L1 108970 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 441-2 chr1 42358735 42359071 + 2 NA Intergenic L1M5|LINE|L1 -21889 NM_173642 284716 Hs.420244 NM_173642 ENSG00000177181 RIMKLA FAM80A|NAAGS|NAAGS-II ribosomal modification protein rimK like family member A protein-coding 402-273 chr5 76183629 76184015 + 2 NA intron (NM_014979, intron 2 of 12) L2c|LINE|L2 100439 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 315-104 chr12 46734239 46734419 + 2 NA Intergenic MIR|SINE|MIR 91668 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 221-213 chr4 44300055 44300256 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 148654 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 484-137 chr2 125519711 125520101 + 2 NA Intergenic L1PA17|LINE|L1 598079 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 250-168 chr17 72960688 72960877 + 2 NA intron (NM_001352692, intron 4 of 9) AluJo|SINE|Alu 131906 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 385-122 chr16 52458515 52458817 + 2 NA intron (NM_001146188, intron 4 of 7) intron (NM_001146188, intron 4 of 7) 88477 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 273-89 chr11 114372122 114372303 + 2 NA intron (NR_120567, intron 2 of 2) L2c|LINE|L2 7827 NR_120567 101928940 Hs.409846 NR_120567 ENSG00000256195 LOC101928940 - uncharacterized LOC101928940 ncRNA 274-228 chr2 222268954 222269167 + 2 NA intron (NM_181457, intron 4 of 7) intron (NM_181457, intron 4 of 7) -29087 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 310-481 chr7 54155879 54156055 + 2 NA Intergenic Intergenic -174730 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 539-123 chr2 129658205 129658554 + 2 NA Intergenic L1MDa|LINE|L1 219112 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 303-454 chr8 84217185 84217404 + 2 NA intron (NM_001354323, intron 1 of 7) intron (NM_001354323, intron 1 of 7) 32628 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 345-498 chr7 62895895 62896205 + 2 NA Intergenic ALR/Alpha|Satellite|centr 408006 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 577-45 chr11 100364429 100364855 + 2 NA Intergenic L1PA16|LINE|L1 -322646 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 298-291 chr3 51229570 51229746 + 2 NA intron (NM_004947, intron 19 of 52) intron (NM_004947, intron 19 of 52) -155633 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 591-3 chr1 42602491 42603058 + 2 NA intron (NM_001080850, intron 10 of 16) L1MCa|LINE|L1 -55649 NM_006347 10465 Hs.256639 NM_006347 ENSG00000171960 PPIH CYP-20|CYPH|SnuCyp-20|USA-CYP peptidylprolyl isomerase H protein-coding 658-103 chr6 15228554 15229036 + 2 NA Intergenic AluJo|SINE|Alu -17274 NM_004973 3720 Hs.269059 NM_004973 ENSG00000008083 JARID2 JMJ jumonji and AT-rich interaction domain containing 2 protein-coding 362-304 chr4 62404193 62404499 + 2 NA Intergenic MIR|SINE|MIR -242581 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 542-76 chr17 31660780 31661140 + 2 NA Intergenic Intergenic 85549 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 204-237 chr5 109595763 109595946 + 2 NA Intergenic Intergenic -93512 NM_002372 4124 Hs.432822 NM_002372 ENSG00000112893 MAN2A1 AMan II|GOLIM7|MANA2|MANII mannosidase alpha class 2A member 1 protein-coding 342-136 chr14 20751148 20751475 + 2 NA Intergenic Intergenic 5424 NM_006683 10876 Hs.304757 NM_006683 ENSG00000181562 EDDM3A EP3A|FAM12A|HE3-ALPHA|HE3A|HE3ALPHA|RAM1 epididymal protein 3A protein-coding 347-53 chr10 59306261 59306471 + 2 NA intron (NM_001347852, intron 4 of 12) intron (NM_001347852, intron 4 of 12) 56183 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 413-67 chr12 46436700 46437081 + 2 NA intron (NR_125381, intron 2 of 2) MLT1F2|LTR|ERVL-MaLR 52783 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 324-145 chr13 90229968 90230172 + 2 NA Intergenic Intergenic -1112 NR_030754 693207 NR_030754 ENSG00000283783 MIR622 MIRN622|hsa-mir-622 microRNA 622 ncRNA 267-132 chr16 17925744 17925972 + 2 NA Intergenic Intergenic 406804 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 373-372 chr7 19814698 19814896 + 2 NA Intergenic Intergenic -41180 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 316-6 chr1 38904513 38904711 + 2 NA intron (NM_001304746, intron 4 of 7) AluJb|SINE|Alu -22986 NR_037633 100527950 Hs.591506 NR_037633 GJA9-MYCBP Cx58|Cx59|GJA10|GJA9 GJA9-MYCBP readthrough ncRNA 303-370 chr5 110119044 110119286 + 2 NA Intergenic L1MA2|LINE|L1 235983 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 443-15 chr1 112183891 112184250 + 2 NA Intergenic L2c|LINE|L2 193534 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 530-183 chr4 114572557 114573030 + 2 NA Intergenic Intergenic -25609 NM_001322113 7368 Hs.144197 NM_003360 ENSG00000174607 UGT8 CGT|UGT4 UDP glycosyltransferase 8 protein-coding 241-280 chr4 132510799 132510954 + 2 NA Intergenic L1MC4|LINE|L1 -80213 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 507-64 chr12 20286367 20286718 + 2 NA Intergenic L1MC1|LINE|L1 -82703 NM_000921 5139 Hs.386791 NM_000921 ENSG00000172572 PDE3A CGI-PDE|CGI-PDE A|CGI-PDE-A|HTNB phosphodiesterase 3A protein-coding 285-457 chr9 74904413 74904574 + 2 NA Intergenic AluY|SINE|Alu -16572 NM_017662 140803 Hs.272225 NM_017662 ENSG00000119121 TRPM6 CHAK2|HMGX|HOMG|HOMG1|HSH transient receptor potential cation channel subfamily M member 6 protein-coding 480-240 chr5 116800080 116800510 + 2 NA Intergenic L1MC|LINE|L1 -38086 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 422-298 chr8 87334931 87335214 + 2 NA intron (NM_173538, intron 8 of 10) L1PA8|LINE|L1 468657 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 360-23 chr1 238251546 238251821 + 2 NA Intergenic L2b|LINE|L2 234334 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 345-455 chr6 25739648 25739883 + 2 NA Intergenic L1MD2|LINE|L1 7332 NR_045125 387319 Hs.741681 NR_045125 HIST1H2APS1 H2AFSP|bA317E16.5 histone cluster 1 H2A pseudogene 1 pseudo 517-52 chr12 1905986 1906323 + 2 NA intron (NM_172364, intron 6 of 37).2 L1M4c|LINE|L1 12498 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 552-50 chr13 22413243 22413783 + 2 NA Intergenic Intergenic 203228 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 263-341 chr5 155679171 155679371 + 2 NA Intergenic HUERS-P2-int|LTR|ERV1 -647486 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 166-101 chr5 156339974 156340105 + 2 NA intron (NM_172244, intron 2 of 7) Arthur1B|DNA|hAT-Tip100 12875 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 673-83 chr3 174160131 174160692 + 2 NA intron (NM_001365928, intron 4 of 6) intron (NM_001365928, intron 4 of 6) -239615 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 316-434 chr5 42231905 42232156 + 2 NA Intergenic L1MC1|LINE|L1 -56685 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 274-420 chrX 65804866 65805105 + 2 NA Intergenic Intergenic 137331 NM_002444 4478 Hs.87752 NM_002444 ENSG00000147065 MSN HEL70|IMD50 moesin protein-coding 302-190 chr19 36827707 36828003 + 2 NA non-coding (NR_040027, exon 6 of 6) non-coding (NR_040027, exon 6 of 6) 10172 NM_001242802 388536 Hs.282067 NM_206894 ENSG00000197863 ZNF790 - zinc finger protein 790 protein-coding 524-201 chr5 67572321 67572692 + 2 NA Intergenic L1M4|LINE|L1 74283 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 420-234 chr5 73346150 73346437 + 2 NA Intergenic MLT2B2|LTR|ERVL 8387 NR_146627 105379033 Hs.145178 NR_146627 LINC02230 - long intergenic non-protein coding RNA 2230 ncRNA 360-388 chr5 164762480 164762780 + 2 NA Intergenic AluSq|SINE|Alu 292351 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 390-146 chr17 68683433 68683633 + 2 NA Intergenic L2b|LINE|L2 55379 NR_110825 101928104 Hs.569826 NR_110825 ENSG00000267659 LINC01482 - long intergenic non-protein coding RNA 1482 ncRNA 368-400 chr6 101947491 101947819 + 2 NA intron (NM_001166247, intron 13 of 16) intron (NM_001166247, intron 13 of 16) 548670 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 267-11 chr1 78544231 78544419 + 2 NA Intergenic Intergenic 53351 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 355-404 chr5 84913785 84914048 + 2 NA Intergenic L1MC3|LINE|L1 -529036 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 332-219 chr19 9268326 9268514 + 2 NA Intergenic Intergenic 17376 NM_001079935 26648 Hs.129832 NM_001079935 ENSG00000237521 OR7E24 HSHT2|OR19-8|OR7E24P|OR7E24Q olfactory receptor family 7 subfamily E member 24 protein-coding 707-6 chr1 194526319 194526847 + 2 NA Intergenic L1MB1|LINE|L1 1221838 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 322-111 chr12 7362370 7362543 + 2 NA intron (NM_001297650, intron 18 of 19) (TATATAA)n|Simple_repeat|Simple_repeat 58124 NM_001080454 341392 Hs.450804 NM_001080454 ENSG00000215009 ACSM4 - acyl-CoA synthetase medium chain family member 4 protein-coding 504-110 chr18 73733622 73733989 + 2 NA Intergenic Intergenic 408864 NR_038340 100505817 Hs.197042 NR_038340 ENSG00000261780 LINC02582 - long intergenic non-protein coding RNA 2582 ncRNA 232-21 chr1 199832144 199832324 + 2 NA Intergenic Intergenic -195476 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 327-488 chr8 83677500 83677712 + 2 NA Intergenic L1M5|LINE|L1 273848 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 445-248 chr7 32109843 32110255 + 2 NA intron (NM_001322059, intron 3 of 17) L3|LINE|CR1 -38613 NM_001191059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 362-205 chr2 30507077 30507313 + 2 NA intron (NM_001304445, intron 3 of 7) intron (NM_001304445, intron 3 of 7) 59949 NM_001304446 253558 Hs.468048 NM_182551 ENSG00000172954 LCLAT1 1AGPAT8|AGPAT8|ALCAT1|HSRG1849|LYCAT|UNQ1849 lysocardiolipin acyltransferase 1 protein-coding 474-182 chr3 69769056 69769490 + 2 NA intron (NM_006722, intron 1 of 9) MIR|SINE|MIR 5462 NM_006722 4286 Hs.166017 NM_000248 ENSG00000187098 MITF CMM8|COMMAD|MI|WS2|WS2A|bHLHe32 melanocyte inducing transcription factor protein-coding 554-68 chr13 111843500 111843987 + 2 NA Intergenic Intergenic -49635 NR_046992 101928616 Hs.528450 NR_046992 LINC00354 - long intergenic non-protein coding RNA 354 ncRNA 319-199 chr18 11206956 11207121 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -58276 NM_022068 63895 Hs.436902 NM_022068 ENSG00000154864 PIEZO2 C18orf30|C18orf58|DA3|DA5|DAIPT|FAM38B|FAM38B2|HsT748|HsT771|MWKS piezo type mechanosensitive ion channel component 2 protein-coding 263-19 chr1 153177698 153177890 + 2 NA intron (NR_110685, intron 2 of 2) L1ME2|LINE|L1 3276 NR_110685 101928009 Hs.385720 NR_110685 ENSG00000229699 LOC101928009 - uncharacterized LOC101928009 ncRNA 141-26 chr15 67447165 67447260 + 2 NA intron (NR_040052, intron 3 of 5) MIRb|SINE|MIR 73761 NR_040055 100506686 Hs.656245 NR_040051 ENSG00000259673 IQCH-AS1 - IQCH antisense RNA 1 ncRNA 346-192 chr17 54702512 54702726 + 2 NA Intergenic L1M4|LINE|L1 -198072 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 389-89 chr12 118803509 118803726 + 2 NA Intergenic L1MB7|LINE|L1 29919 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 282-393 chr6 2607264 2607534 + 2 NA Intergenic Intergenic -27101 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 287-178 chr18 71367714 71367975 + 2 NA Intergenic HAL1|LINE|L1 211112 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 219-333 chr7 51282900 51283063 + 2 NA intron (NM_015198, intron 1 of 12) L1PA16|LINE|L1 33828 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 391-389 chrX 98286885 98287136 + 2 NA Intergenic Intergenic -722475 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 620-129 chr7 21274176 21274691 + 2 NA Intergenic Intergenic -153650 NM_001326542 6671 Hs.88013 NM_003112 ENSG00000105866 SP4 HF1B|SPR-1 Sp4 transcription factor protein-coding 204-94 chr14 82432224 82432378 + 2 NA Intergenic Intergenic -210331 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 308-489 chr8 68359238 68359412 + 2 NA intron (NR_146187, intron 1 of 13) intron (NR_146187, intron 1 of 13) -27834 NR_038877 286189 Hs.593427 NR_038877 ENSG00000248801 C8orf34-AS1 - C8orf34 antisense RNA 1 ncRNA 261-408 chr9 28466625 28466854 + 2 NA intron (NM_152570, intron 3 of 6) L1MA3|LINE|L1 252566 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 289-16 chr1 116354227 116354488 + 2 NA Intergenic L1MB7|LINE|L1 -18887 NM_000701 476 Hs.371889 NM_000701 ENSG00000163399 ATP1A1 CMT2DD|HOMGSMR2 ATPase Na+/K+ transporting subunit alpha 1 protein-coding 370-476 chr9 78941421 78941710 + 2 NA Intergenic Intergenic 204101 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 254-318 chr5 114474745 114474974 + 2 NA intron (NR_130785, intron 7 of 12) intron (NR_130785, intron 7 of 12) 41348 NM_170775 3781 Hs.98280 NM_021614 ENSG00000080709 KCNN2 KCa2.2|SK2|SKCA2|SKCa 2|hSK2 potassium calcium-activated channel subfamily N member 2 protein-coding 341-583 chrX 113877528 113877855 + 2 NA intron (NR_131204, intron 1 of 2) L1MC3|LINE|L1 60527 NR_131204 105463123 Hs.550218 NR_131204 XACT - X active specific transcript ncRNA 355-40 chr10 25801943 25802201 + 2 NA Intergenic Intergenic 131638 NR_120650 101929073 Hs.409816 NR_120650 ENSG00000226304 LOC101929073 - uncharacterized LOC101929073 ncRNA 337-329 chr22 33822567 33822879 + 2 NA intron (NM_001362953, intron 1 of 14) AluSx1|SINE|Alu 97705 NM_133642 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 304-292 chr20 7685392 7685653 + 2 NA Intergenic Intergenic 254936 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 380-174 chr2 39587072 39587355 + 2 NA intron (NR_037875, intron 5 of 5) L1ME3C|LINE|L1 -78285 NM_001167959 130733 Hs.40808 NM_152390 ENSG00000152154 TMEM178A TMEM178 transmembrane protein 178A protein-coding 353-241 chr2 43979234 43979558 + 2 NA intron (NM_133259, intron 3 of 37) L1ME4b|LINE|L1 16593 NM_133259 10128 Hs.368084 NM_133259 ENSG00000138095 LRPPRC CLONE-23970|GP130|LRP130|LSFC leucine rich pentatricopeptide repeat containing protein-coding 520-109 chr16 54140478 54140872 + 2 NA Intergenic MIRb|SINE|MIR 101282 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 287-236 chr21 33333200 33333343 + 2 NA intron (NM_000629, intron 1 of 10) L1M2a|LINE|L1 8301 NM_000629 3454 Hs.529400 NM_000629 ENSG00000142166 IFNAR1 AVP|IFN-alpha-REC|IFNAR|IFNBR|IFRC interferon alpha and beta receptor subunit 1 protein-coding 264-162 chr17 2914405 2914667 + 2 NA intron (NM_001330058, intron 3 of 24) AluY|SINE|Alu 51359 NR_110818 101927911 Hs.626373 NR_110818 ENSG00000262884 LOC101927911 - uncharacterized LOC101927911 ncRNA 498-293 chrX 58391155 58391571 + 2 NA Intergenic ALR/Alpha|Satellite|centr -480730 NM_007156 7789 Hs.550094 NM_007156 ENSG00000198205 ZXDA ZNF896 zinc finger X-linked duplicated A protein-coding 256-424 chr8 91960726 91960956 + 2 NA intron (NM_004349, intron 10 of 10) intron (NM_004349, intron 10 of 10) 56839 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 499-246 chr7 62892491 62892975 + 2 NA Intergenic ALR/Alpha|Satellite|centr 411323 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 264-110 chr13 60261152 60261362 + 2 NA intron (NR_047022, intron 1 of 2) MIRc|SINE|MIR 6847 NR_047022 100874169 Hs.171027 NR_047022 LINC00434 - long intergenic non-protein coding RNA 434 ncRNA 216-167 chr2 55509001 55509136 + 2 NA Intergenic Intergenic -10527 NM_001282761 112942 Hs.264208 NM_080667 ENSG00000163001 CFAP36 BARTL1|CCDC104 cilia and flagella associated protein 36 protein-coding 325-89 chr10 124204009 124204214 + 2 NA Intergenic L1ME3G|LINE|L1 -110513 NM_001270765 51363 Hs.287537 NM_014863 ENSG00000182022 CHST15 BRAG|GALNAC4S-6ST carbohydrate sulfotransferase 15 protein-coding 183-99 chr4 35996296 35996450 + 2 NA Intergenic Intergenic 247566 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 299-330 chr4 80250351 80250597 + 2 NA Intergenic Intergenic -16114 NM_033143 2250 Hs.37055 NM_004464 ENSG00000138675 FGF5 HBGF-5|Smag-82|TCMGLY fibroblast growth factor 5 protein-coding 133-40 chr20 47696447 47696530 + 2 NA intron (NM_198596, intron 4 of 20) intron (NM_198596, intron 4 of 20) 89576 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 604-27 chr11 39914905 39915360 + 2 NA Intergenic Intergenic 377998 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 365-358 chr6 119834758 119835103 + 2 NA intron (NR_134600, intron 2 of 3) intron (NR_134600, intron 2 of 3) -180249 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 185-167 chr5 83525216 83525375 + 2 NA intron (NM_001164098, intron 7 of 13) intron (NM_001164098, intron 7 of 13) 37019 NR_136215 105379054 Hs.643801 NR_136215 ENSG00000249835 VCAN-AS1 - VCAN antisense RNA 1 ncRNA 542-59 chr14 68523988 68524363 + 2 NA intron (NM_001321818, intron 10 of 10) MIR|SINE|MIR 104612 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 590-152 chr7 3550857 3551348 + 2 NA intron (NM_152744, intron 1 of 44) intron (NM_152744, intron 1 of 44) 249850 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 166-112 chr7 103876022 103876145 + 2 NA intron (NM_005045, intron 2 of 64) intron (NM_005045, intron 2 of 64) 113433 NM_173054 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 705-7 chr10 60477578 60478136 + 2 NA intron (NM_001204403, intron 2 of 43) X6A_LINE|LINE|CR1 -87982 NM_020987 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 428-106 chr18 70584875 70585234 + 2 NA Intergenic L1M3c|LINE|L1 65900 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 232-89 chr13 103062435 103062611 + 2 NA intron (NM_000452, intron 1 of 5) intron (NM_000452, intron 1 of 5) 3894 NM_000452 6555 Hs.194783 NM_000452 ENSG00000125255 SLC10A2 ASBT|IBAT|ISBT|NTCP2|PBAM solute carrier family 10 member 2 protein-coding 316-253 chr2 21649380 21649591 + 2 NA Intergenic MIR3|SINE|MIR 61167 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 230-246 chr3 168774876 168775002 + 2 NA intron (NR_021485, intron 6 of 15) L1MD1|LINE|L1 -127006 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 201-141 chr21 29170141 29170311 + 2 NA intron (NM_001286620, intron 4 of 4) intron (NM_001286620, intron 4 of 4) -23268 NR_027072 193629 Hs.720711 NM_138968 ENSG00000215533 LINC00189 C21orf109|NCRNA00189 long intergenic non-protein coding RNA 189 ncRNA 392-277 chr6 50148057 50148309 + 2 NA Intergenic Intergenic -98254 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 307-251 chr2 144352636 144352875 + 2 NA Intergenic L1ME4b|LINE|L1 -19686 NM_001354360 79712 Hs.44780 NM_024659 ENSG00000121964 GTDC1 Hmat-Xa|mat-Xa glycosyltransferase like domain containing 1 protein-coding 377-312 chr5 24935428 24935732 + 2 NA Intergenic Intergenic -94997 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 248-93 chr12 126791102 126791278 + 2 NA Intergenic Intergenic -18928 NR_033878 387895 Hs.534660 NR_033878 LINC00944 - long intergenic non-protein coding RNA 944 ncRNA 342-163 chr15 61328830 61329038 + 2 NA Intergenic L1ME3Cz|LINE|L1 -99632 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 266-102 chr13 101343624 101343837 + 2 NA intron (NM_001350749, intron 7 of 43) intron (NM_001350749, intron 7 of 43) 72778 NM_052867 259232 Hs.525146 NM_052867 ENSG00000102452 NALCN CLIFAHDD|CanIon|IHPRF|IHPRF1|INNFD|VGCNL1|bA430M15.1 sodium leak channel, non-selective protein-coding 186-30 chr12 12534166 12534324 + 2 NA intron (NM_030640, intron 1 of 6).2 intron (NM_030640, intron 1 of 6).2 28618 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 317-34 chr1 222831342 222831500 + 2 NA intron (NM_032890, intron 1 of 9) intron (NM_032890, intron 1 of 9) 16382 NM_032890 84976 Hs.528817 NM_032890 ENSG00000154309 DISP1 DISPA dispatched RND transporter family member 1 protein-coding 262-241 chr20 1552516 1552773 + 2 NA intron (NM_178460, intron 1 of 3) intron (NM_178460, intron 1 of 3) 5061 NM_178460 128646 Hs.729560 NM_178460 ENSG00000125900 SIRPD PTPNS1L2|dJ576H24.4 signal regulatory protein delta protein-coding 330-438 chr5 124421431 124421613 + 2 NA intron (NR_125774, intron 3 of 5) L1M3e|LINE|L1 16998 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 581-186 chrX 22533274 22533775 + 2 NA intron (NR_073010, intron 4 of 11) intron (NR_073010, intron 4 of 11) 260611 NM_152577 158506 Hs.132485 NM_152577 ENSG00000175809 CBLL2 CT138|HAKAIL|ZNF645 Cbl proto-oncogene like 2 protein-coding 353-310 chr22 49604971 49605188 + 2 NA intron (NR_110523, intron 1 of 4) L1ME4a|LINE|L1 52440 NR_110523 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 266-347 chr5 144063671 144063848 + 2 NA Intergenic MER4E|LTR|ERV1 106900 NM_001271732 81555 Hs.372050 NM_030799 ENSG00000145817 YIPF5 FinGER5|SB140|SMAP-5|SMAP5|YIP1A Yip1 domain family member 5 protein-coding 230-77 chr12 19431415 19431633 + 2 NA Intergenic Intergenic -7968 NM_001363736 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 335-248 chr2 70428182 70428415 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 53342 NR_046798 100874273 Hs.682157 NR_046798 ENSG00000224606 TGFA-IT1 - TGFA intronic transcript 1 ncRNA 271-212 chr2 135189238 135189482 + 2 NA Intergenic L1MB3|LINE|L1 52732 NR_145723 109616967 NR_145723 ENSG00000208308 SNORA40B - small nucleolar RNA, H/ACA box 40B snoRNA 120-18 chr14 63421469 63421567 + 2 NA intron (NR_104104, intron 3 of 12) intron (NR_104104, intron 3 of 12) 86720 NM_001282182 5529 Hs.334868 NM_006246 ENSG00000154001 PPP2R5E B56E|B56epsilon protein phosphatase 2 regulatory subunit B'epsilon protein-coding 136-40 chr17 59076047 59076115 + 2 NA intron (NR_148346, intron 7 of 23) intron (NR_148346, intron 7 of 23) 30799 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 319-272 chr2 172578630 172578804 + 2 NA intron (NM_002610, intron 8 of 10) L1MB7|LINE|L1 22627 NM_002610 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 337-258 chr2 100699848 100700176 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 96273 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 291-84 chr11 112827300 112827554 + 2 NA Intergenic Intergenic -133993 NM_001076682 4684 Hs.503878 NM_000615 ENSG00000149294 NCAM1 CD56|MSK39|NCAM neural cell adhesion molecule 1 protein-coding 546-138 chr3 2875881 2876249 + 2 NA intron (NM_175607, intron 8 of 24) intron (NM_175607, intron 8 of 24) -16150 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 421-282 chr7 46684744 46685035 + 2 NA Intergenic Intergenic 12233 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 245-368 chr9 36215337 36215568 + 2 NA 3' UTR (NM_001190383, exon 11 of 11) 3' UTR (NM_001190383, exon 11 of 11) 24531 NM_001311205 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 301-96 chr12 74283582 74283817 + 2 NA intron (NR_038300, intron 3 of 6) L2a|LINE|L2 8932 NR_038300 100507377 Hs.455715 NR_038300 ENSG00000251138 LOC100507377 - uncharacterized LOC100507377 ncRNA 316-23 chr1 115361028 115361317 + 2 NA intron (NR_157569, intron 1 of 1) intron (NR_157569, intron 1 of 1) -22936 NM_002506 4803 Hs.2561 NM_002506 ENSG00000134259 NGF Beta-NGF|HSAN5|NGFB nerve growth factor protein-coding 306-223 chr2 16033021 16033191 + 2 NA Intergenic AluSx3|SINE|Alu -17321 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 468-231 chr4 103690178 103690534 + 2 NA intron (NM_001059, intron 1 of 4) L1M4a2|LINE|L1 29629 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 344-73 chr11 20229309 20229553 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -68956 NM_001029865 120237 NM_001029865 ENSG00000109851 DBX1 - developing brain homeobox 1 protein-coding 317-196 chr18 13444382 13444692 + 2 NA intron (NM_181482, intron 4 of 5) Tigger2b_Pri|DNA|TcMar-Tigger -15410 NR_049822 100847080 NR_049822 ENSG00000266146 MIR5190 - microRNA 5190 ncRNA 255-134 chr15 95245985 95246175 + 2 NA Intergenic Intergenic 81020 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 369-135 chr15 60907130 60907345 + 2 NA intron (NM_134261, intron 1 of 10) intron (NM_134261, intron 1 of 10) 225668 NR_120319 100996876 Hs.511626 NR_120318 RORA-AS2 - RORA antisense RNA 2 ncRNA 358-382 chr5 109247747 109247980 + 2 NA intron (NR_149040, intron 3 of 3) intron (NR_149040, intron 3 of 3) 78506 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 410-322 chr8 138293445 138293782 + 2 NA intron (NM_015912, intron 3 of 19) L1PB3|LINE|L1 203648 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 412-194 chr21 34122999 34123314 + 2 NA intron (NM_032476, intron 1 of 2) intron (NM_032476, intron 1 of 2) 49578 NM_006933 6526 Hs.302742 NM_006933 ENSG00000198743 SLC5A3 BCW2|SMIT|SMIT1|SMIT2 solute carrier family 5 member 3 protein-coding 398-342 chr8 43587238 43587620 + 2 NA Intergenic ALR/Alpha|Satellite|centr 294987 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 480-68 chr14 34417541 34417990 + 2 NA Intergenic L1M3|LINE|L1 44475 NM_138288 171546 Hs.740577 NM_138288 ENSG00000165389 SPTSSA C14orf147|SSSPTA serine palmitoyltransferase small subunit A protein-coding 332-315 chr3 17126968 17127185 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 193880 NR_037465 100500913 NR_037465 ENSG00000283885 MIR3714 - microRNA 3714 ncRNA 331-104 chr11 121684395 121684680 + 2 NA Intergenic Tigger19a|DNA|TcMar-Tigger 232223 NM_003105 6653 Hs.368592 NM_003105 ENSG00000137642 SORL1 C11orf32|LR11|LRP9|SORLA|SorLA-1|gp250 sortilin related receptor 1 protein-coding 447-150 chr20 19231744 19232100 + 2 NA intron (NM_020689, intron 1 of 16) L2a|LINE|L2 19280 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 277-44 chr10 24875000 24875251 + 2 NA intron (NM_020200, intron 3 of 8) THE1C|LTR|ERVL-MaLR 77481 NM_001282786 56952 Hs.405619 NM_020200 ENSG00000099256 PRTFDC1 HHGP phosphoribosyl transferase domain containing 1 protein-coding 376-402 chr8 79788356 79788717 + 2 NA intron (NR_125410, intron 3 of 3) intron (NR_125410, intron 3 of 3) 20394 NR_125410 101927067 Hs.144030 NR_125410 ENSG00000272138 LINC01607 - long intergenic non-protein coding RNA 1607 ncRNA 235-36 chr10 44381517 44381717 + 2 NA intron (NM_001277990, intron 1 of 2) intron (NM_001277990, intron 1 of 2) 3480 NM_000609 6387 Hs.522891 NM_000609 ENSG00000107562 CXCL12 IRH|PBSF|SCYB12|SDF1|TLSF|TPAR1 C-X-C motif chemokine ligand 12 protein-coding 338-267 chr2 117511828 117512065 + 2 NA Intergenic Intergenic -302745 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 462-208 chr4 81990388 81990698 + 2 NA Intergenic Intergenic 383448 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 347-518 chr8 103104351 103104619 + 2 NA Intergenic Intergenic -16547 NR_145429 379034 Hs.591862 NR_145429 LINC01181 - long intergenic non-protein coding RNA 1181 ncRNA 423-240 chr6 37597959 37598218 + 2 NA Intergenic L1MEd|LINE|L1 -42666 NR_039669 100616413 NR_039669 ENSG00000263926 MIR4462 - microRNA 4462 ncRNA 492-72 chr12 128421692 128422087 + 2 NA intron (NM_001136103, intron 2 of 8) L2a|LINE|L2 127797 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 285-237 chr2 230143972 230144166 + 2 NA Intergenic Intergenic -75145 NM_152527 151473 Hs.504317 NM_152527 ENSG00000163053 SLC16A14 MCT14 solute carrier family 16 member 14 protein-coding 122-44 chr5 65237462 65237541 + 2 NA intron (NR_135689, intron 16 of 25) L1ME2z|LINE|L1 244419 NM_197941 11174 Hs.482291 NM_197941 ENSG00000049192 ADAMTS6 ADAM-TS 6|ADAM-TS6|ADAMTS-6 ADAM metallopeptidase with thrombospondin type 1 motif 6 protein-coding 318-240 chr19 57464817 57464978 + 2 NA Intergenic L1M1|LINE|L1 -8158 NM_020633 57191 Hs.677423 NM_020633 ENSG00000178201 VN1R1 V1RL1|VNR19I1|ZVNH1|ZVNR1 vomeronasal 1 receptor 1 protein-coding 480-289 chr8 68206925 68207281 + 2 NA intron (NM_024870, intron 37 of 39) intron (NM_024870, intron 37 of 39) -123270 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 312-80 chr11 43874429 43874714 + 2 NA Intergenic Intergenic -6260 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 344-108 chr12 39490580 39490783 + 2 NA Intergenic Intergenic -47561 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 202-148 chr21 30824128 30824263 + 2 NA Intergenic MIRb|SINE|MIR 5564 NM_181606 337878 Hs.407656 NM_181606 ENSG00000274749 KRTAP7-1 KAP7.1 keratin associated protein 7-1 (gene/pseudogene) protein-coding 221-236 chr5 21265616 21265815 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -193765 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 318-427 chr5 9593154 9593327 + 2 NA Intergenic Intergenic 37111 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 224-290 chr6 165672164 165672310 + 2 NA Intergenic Intergenic -9957 NM_006661 10846 Hs.348762 NM_006661 ENSG00000112541 PDE10A ADSD2|HSPDE10A|IOLOD|LINC00473|PDE10A19 phosphodiesterase 10A protein-coding 313-402 chr4 110376261 110376548 + 2 NA Intergenic L2a|LINE|L2 -99751 NM_001977 2028 Hs.435765 NM_001977 ENSG00000138792 ENPEP APA|CD249|gp160 glutamyl aminopeptidase protein-coding 368-17 chr1 97378690 97378951 + 2 NA intron (NM_000110, intron 15 of 22) L2b|LINE|L2 282897 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 307-42 chr10 21831669 21831945 + 2 NA intron (NM_022365, intron 8 of 11) AluY|SINE|Alu 171923 NM_022365 64215 Hs.499000 NM_022365 ENSG00000136770 DNAJC1 DNAJL1|ERdj1|HTJ1|MTJ1 DnaJ heat shock protein family (Hsp40) member C1 protein-coding 319-214 chr19 28541968 28542278 + 2 NA intron (NR_110759, intron 5 of 9) L1PB3|LINE|L1 -64565 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 196-52 chr11 115757347 115757483 + 2 NA intron (NR_034148, intron 2 of 2) AluSg|SINE|Alu 2785 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 174-35 chr13 56050969 56051086 + 2 NA Intergenic Intergenic 876573 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 226-75 chr12 125779370 125779573 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 157019 NM_001286219 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 650-79 chr3 84553677 84554174 + 2 NA Intergenic Intergenic 315650 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 327-204 chr17 76436413 76436654 + 2 NA intron (NM_022066, intron 1 of 17) intron (NM_022066, intron 1 of 17) 16619 NM_022066 63893 Hs.16130 NM_022066 ENSG00000175931 UBE2O E2-230K ubiquitin conjugating enzyme E2 O protein-coding 342-96 chr11 74433660 74433854 + 2 NA Intergenic AluSx|SINE|Alu 33798 NM_005472 10008 Hs.523899 NM_005472 ENSG00000175538 KCNE3 BRGDA6|HOKPP|HYPP|MiRP2 potassium voltage-gated channel subfamily E regulatory subunit 3 protein-coding 579-132 chr5 66099785 66100096 + 2 NA Intergenic L1MB2|LINE|L1 -44360 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 283-377 chr5 121314147 121314383 + 2 NA Intergenic L1MEb|LINE|L1 -8285 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 348-320 chr3 121129026 121129241 + 2 NA intron (NR_145517, intron 7 of 8) ERVL-E-int|LTR|ERVL 79493 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 364-111 chr12 99327729 99328042 + 2 NA intron (NM_152788, intron 12 of 25) L1ME4a|LINE|L1 -172795 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 214-233 chr4 40748194 40748339 + 2 NA Intergenic AluY|SINE|Alu -1689 NM_001330648 79730 Hs.479602 NM_024677 ENSG00000179299 NSUN7 - NOP2/Sun RNA methyltransferase family member 7 protein-coding 330-507 chr8 52178950 52179267 + 2 NA intron (NM_014682, intron 9 of 25) intron (NM_014682, intron 9 of 25) -15254 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 305-8 chr1 60687850 60688153 + 2 NA intron (NR_110628, intron 4 of 5) L1PA11|LINE|L1 -65316 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 292-198 chr19 51820330 51820564 + 2 NA intron (NR_163433, intron 9 of 11) MIRb|SINE|MIR 25290 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 338-507 chr7 68646155 68646382 + 2 NA Intergenic Intergenic 626015 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 430-346 chrX 86759281 86759659 + 2 NA intron (NM_001139515, intron 7 of 11) L1MA4A|LINE|L1 496502 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 290-396 chr6 123455941 123456087 + 2 NA intron (NR_110844, intron 1 of 2) intron (NR_110844, intron 1 of 2) 16410 NR_110844 101927990 Hs.660877 NR_110844 TRDN-AS1 HRAT13 TRDN antisense RNA 1 ncRNA 347-352 chr4 81908219 81908402 + 2 NA Intergenic L1MC1|LINE|L1 -436403 NM_001300736 153020 Hs.591696 NM_152545 ENSG00000138670 RASGEF1B GPIG4 RasGEF domain family member 1B protein-coding 145-35 chr17 39398332 39398431 + 2 NA intron (NM_001370209, intron 1 of 13) intron (NM_001370209, intron 1 of 13) 3245 NM_032875 84961 Hs.462946 NM_032875 ENSG00000108306 FBXL20 Fbl2|Fbl20 F-box and leucine rich repeat protein 20 protein-coding 228-192 chr20 42852069 42852240 + 2 NA intron (NM_133170, intron 2 of 31) intron (NM_133170, intron 2 of 31) -116589 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 221-58 chr11 127889996 127890190 + 2 NA Intergenic Tigger15a|DNA|TcMar-Tigger -318673 NR_146647 105369564 Hs.591937 NR_146647 ENSG00000272575 LINC02098 - long intergenic non-protein coding RNA 2098 ncRNA 277-389 chr7 122213435 122213578 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -69257 NM_005763 10157 Hs.156738 NM_005763 ENSG00000008311 AASS LKR/SDH|LKRSDH|LORSDH aminoadipate-semialdehyde synthase protein-coding 335-203 chr17 71029679 71029898 + 2 NA Intergenic L1MC3|LINE|L1 172391 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 281-24 chr1 215293679 215293872 + 2 NA Intergenic Intergenic 211038 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 364-30 chr1 181807954 181808315 + 2 NA TTS (NM_001205294) TTS (NM_001205294) 253578 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 273-202 chr2 22453905 22454063 + 2 NA Intergenic Intergenic -82495 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 434-257 chr7 26633388 26633666 + 2 NA Intergenic Intergenic -4344 NR_161201 285941 Hs.413394 NR_161201 C7orf71 - chromosome 7 open reading frame 71 ncRNA 241-23 chr1 192488314 192488513 + 2 NA Intergenic Intergenic -87360 NM_002922 5996 Hs.75256 NM_002922 ENSG00000090104 RGS1 1R20|BL34|HEL-S-87|IER1|IR20 regulator of G protein signaling 1 protein-coding 579-2 chr1 111041807 111042125 + 2 NA Intergenic L1ME3B|LINE|L1 -78022 NM_001006945 55791 Hs.25245 NM_018372 ENSG00000121931 LRIF1 C1orf103|HBiX1|RIF1 ligand dependent nuclear receptor interacting factor 1 protein-coding 339-550 chr7 145191592 145191895 + 2 NA Intergenic Intergenic -355690 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 339-64 chr10 55717971 55718192 + 2 NA Intergenic L1ME3|LINE|L1 -90139 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 597-41 chr12 90495674 90496097 + 2 NA Intergenic Intergenic 202567 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 371-182 chr2 119114542 119114809 + 2 NA Intergenic MIRc|SINE|MIR 44076 NM_182528 165257 Hs.433493 NM_182528 ENSG00000144119 C1QL2 C1QTNF10|CTRP10 complement C1q like 2 protein-coding 212-342 chr9 26116931 26117084 + 2 NA 3' UTR (NM_001004352, exon 7 of 7) 3' UTR (NM_001004352, exon 7 of 7) 50332 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 285-122 chr14 61995065 61995230 + 2 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 67452 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 194-215 chr8 127779340 127779512 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -15107 NR_003367 5820 Hs.133107 NR_003367 ENSG00000249859 PVT1 LINC00079|MIR1204HG|NCRNA00079|onco-lncRNA-100 Pvt1 oncogene ncRNA 288-249 chr22 47454407 47454596 + 2 NA Intergenic L1MEg|LINE|L1 32610 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 198-86 chr17 19660176 19660299 + 2 NA intron (NM_001369136, intron 6 of 11) intron (NM_001369136, intron 6 of 11) 11486 NM_001369139 224 Hs.499886 NM_000382 ENSG00000072210 ALDH3A2 ALDH10|FALDH|SLS aldehyde dehydrogenase 3 family member A2 protein-coding 328-286 chr2 156117663 156117875 + 2 NA intron (NR_110250, intron 1 of 3) Plat_L3|LINE|CR1 137162 NR_110250 101929378 Hs.171192 NR_110249 ENSG00000226383 LINC01876 - long intergenic non-protein coding RNA 1876 ncRNA 279-71 chr11 80772853 80773054 + 2 NA Intergenic L1MA8|LINE|L1 -10150 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 520-100 chr15 91741057 91741412 + 2 NA Intergenic Intergenic -112474 NM_001145044 28232 Hs.311187 NM_013272 ENSG00000176463 SLCO3A1 OATP-D|OATP-RP3|OATP3A1|OATPD|OATPRP3|SLC21A11 solute carrier organic anion transporter family member 3A1 protein-coding 468-116 chr17 58182446 58182849 + 2 NA Intergenic AluY|SINE|Alu -10079 NM_000502 8288 Hs.279259 NM_000502 ENSG00000121053 EPX EPO|EPP|EPX-PEN|EPXD eosinophil peroxidase protein-coding 329-553 chr7 132747019 132747320 + 2 NA Intergenic L3|LINE|CR1 -11801 NR_134332 100506937 Hs.98247 NR_134332 ENSG00000225881 LOC100506937 - uncharacterized LOC100506937 ncRNA 259-420 chr8 135931175 135931408 + 2 NA Intergenic Intergenic 473835 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 268-3 chr1 41097109 41097314 + 2 NA intron (NM_001172222, intron 4 of 10) intron (NM_001172222, intron 4 of 10) 64221 NM_001172222 22955 Hs.571874 NM_012236 ENSG00000010803 SCMH1 Scml3 Scm polycomb group protein homolog 1 protein-coding 257-157 chr18 47951762 47951960 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -20715 NM_001135937 4087 Hs.12253 NM_005901 ENSG00000175387 SMAD2 JV18|JV18-1|MADH2|MADR2|hMAD-2|hSMAD2 SMAD family member 2 protein-coding 481-170 chr20 12790804 12791119 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 146002 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 285-140 chr16 9598327 9598565 + 2 NA Intergenic Intergenic -142941 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 280-423 chr8 126261169 126261414 + 2 NA Intergenic Intergenic -64204 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 328-474 chr5 127846959 127847139 + 2 NA intron (NM_001317938, intron 5 of 6) intron (NM_001317938, intron 5 of 6) 143660 NM_001317938 728586 Hs.582532 NM_001317938 ENSG00000230561 CCDC192 LINC01183 coiled-coil domain containing 192 protein-coding 170-134 chr8 21606801 21606907 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 182021 NM_001495 2675 Hs.441202 NM_001495 ENSG00000168546 GFRA2 GDNFRB|NRTNR-ALPHA|NTNRA|RETL2|TRNR2 GDNF family receptor alpha 2 protein-coding 271-123 chr14 41176880 41177089 + 2 NA Intergenic L1M4c|LINE|L1 222273 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 228-288 chr6 39374392 39374546 + 2 NA intron (NM_001289020, intron 15 of 21) L1MA7|LINE|L1 -51501 NM_001363784 83795 Hs.287765 NM_032115 ENSG00000095981 KCNK16 K2p16.1|TALK-1|TALK1 potassium two pore domain channel subfamily K member 16 protein-coding 450-279 chr7 41497769 41498185 + 2 NA Intergenic L2b|LINE|L2 -195942 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 608-157 chr8 114919364 114919742 + 2 NA Intergenic L1PA11|LINE|L1 748460 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 324-366 chr3 130611286 130611596 + 2 NA intron (NM_001102608, intron 22 of 35) L2a|LINE|L2 51107 NM_001102608 131873 Hs.591282 NM_001102608 ENSG00000206384 COL6A6 - collagen type VI alpha 6 chain protein-coding 541-242 chr8 118519981 118520310 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -100856 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 319-443 chr6 11989162 11989364 + 2 NA Intergenic Intergenic 11981 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 242 chr1 11550801 11550924 + 2 NA Intergenic Intergenic -58669 NR_104624 101929181 Hs.568616 NR_104624 ENSG00000235643 LINC01647 - long intergenic non-protein coding RNA 1647 ncRNA 382-350 chr6 4244752 4244999 + 2 NA Intergenic L1MA9|LINE|L1 -54846 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 147-10 chr11 110880287 110880393 + 2 NA Intergenic L3|LINE|CR1 -167151 NM_001258416 57569 Hs.6136 NM_020809 ENSG00000137727 ARHGAP20 RARHOGAP Rho GTPase activating protein 20 protein-coding 347-569 chrX 144741499 144741789 + 2 NA Intergenic MER4B-int|LTR|ERV1 -505859 NM_001009614 494118 NM_001009614 ENSG00000203923 SPANXN1 CT11.6 SPANX family member N1 protein-coding 370-220 chr2 37136965 37137207 + 2 NA intron (NM_002759, intron 8 of 16) intron (NM_002759, intron 8 of 16) 10736 NM_001135652 5610 Hs.131431 NM_002759 ENSG00000055332 EIF2AK2 EIF2AK1|PKR|PPP1R83|PRKR eukaryotic translation initiation factor 2 alpha kinase 2 protein-coding 575-89 chr2 108071085 108071629 + 2 NA Intergenic AluJr|SINE|Alu -18602 NR_135071 107178918 NR_135071 ENSG00000231221 LINC01593 - long intergenic non-protein coding RNA 1593 ncRNA 266-295 chr4 89887069 89887255 + 2 NA intron (NM_001371403, intron 1 of 8) L1M1|LINE|L1 7651 NM_001371403 205-180 chr3 60114997 60115142 + 2 NA intron (NM_001320900, intron 6 of 9) L1ME4a|LINE|L1 -34160 NM_001320901 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 139-47 chr2 187146568 187146659 + 2 NA Intergenic L1M4|LINE|L1 -297443 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 274-336 chr6 64673096 64673311 + 2 NA intron (NM_001292009, intron 22 of 43) intron (NM_001292009, intron 22 of 43) -628215 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 392-64 chr12 46028969 46029284 + 2 NA Intergenic L1MCa|LINE|L1 -38552 NM_004719 9169 Hs.210367 NM_004719 ENSG00000139218 SCAF11 CASP11|SFRS2IP|SIP1|SRRP129|SRSF2IP SR-related CTD associated factor 11 protein-coding 544-14 chr1 177160445 177160945 + 2 NA intron (NM_207108, intron 1 of 21) A-rich|Low_complexity|Low_complexity 4017 NM_001364856 460 Hs.495897 NM_004319 ENSG00000152092 ASTN1 ASTN astrotactin 1 protein-coding 493-33 chr10 55007315 55007641 + 2 NA intron (NM_001354404, intron 3 of 34) intron (NM_001354404, intron 3 of 34) -206187 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 514-116 chr17 33352452 33352865 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -59670 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 183-4 chr1 175352586 175352683 + 2 NA intron (NM_003285, intron 18 of 22) intron (NM_003285, intron 18 of 22) -159647 NM_001162894 9674 Hs.518138 NM_014656 ENSG00000235750 KIAA0040 - KIAA0040 protein-coding 468-288 chr6 146142068 146142360 + 2 NA intron (NM_001278065, intron 2 of 9) L1MA3|LINE|L1 113016 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 446-149 chr2 75551999 75552280 + 2 NA intron (NM_001369524, intron 2 of 5) AluJr|SINE|Alu 8800 NM_001135032 84141 Hs.302346 NM_032181 ENSG00000115363 EVA1A FAM176A|TMEM166 eva-1 homolog A, regulator of programmed cell death protein-coding 180-158 chr7 68078261 68078414 + 2 NA Intergenic Intergenic 58084 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 681-44 chr21 34123885 34124394 + 2 NA intron (NM_032476, intron 1 of 2) L2|LINE|L2 50561 NM_006933 6526 Hs.302742 NM_006933 ENSG00000198743 SLC5A3 BCW2|SMIT|SMIT1|SMIT2 solute carrier family 5 member 3 protein-coding 264-138 chr14 80822294 80822507 + 2 NA intron (NM_152446, intron 13 of 24) THE1B-int|LTR|ERVL-MaLR 119338 NM_152446 145508 Hs.162889 NM_152446 ENSG00000100629 CEP128 C14orf145|C14orf61|LEDP/132 centrosomal protein 128 protein-coding 450-280 chr7 42451088 42451343 + 2 NA Intergenic MLT1E1A|LTR|ERVL-MaLR -214006 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 267-385 chr7 11799470 11799643 + 2 NA intron (NM_015204, intron 1 of 26) intron (NM_015204, intron 1 of 26) 32642 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 172-87 chr4 23844301 23844416 + 2 NA intron (NM_001330752, intron 3 of 13) (TATATTA)n|Simple_repeat|Simple_repeat 36934 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 648-79 chr2 236881867 236882321 + 2 NA Intergenic L1M4a1|LINE|L1 174073 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 395-108 chr15 68032487 68032838 + 2 NA Intergenic AluSz|SINE|Alu -21517 NM_016166 8554 Hs.162458 NM_016166 ENSG00000033800 PIAS1 DDXBP1|GBP|GU/RH-II|ZMIZ3 protein inhibitor of activated STAT 1 protein-coding 216-136 chr17 70911995 70912169 + 2 NA Intergenic Intergenic 290097 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 265-421 chrX 45755763 45756011 + 2 NA Intergenic Intergenic -8763 NR_029636 407007 NR_029636 ENSG00000207725 MIR222 MIRN222|miRNA222|mir-222 microRNA 222 ncRNA 369-210 chr2 117868699 117869019 + 2 NA Intergenic L1MA3|LINE|L1 35128 NR_158150 107985939 NR_158150 LOC107985939 - uncharacterized LOC107985939 ncRNA 334-576 chr9 106470458 106470673 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -130363 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 288-477 chrX 25415976 25416145 + 2 NA Intergenic L2|LINE|L2 -400095 NM_139058 170302 Hs.300304 NM_139058 ENSG00000004848 ARX CT121|EIEE1|ISSX|MRX29|MRX32|MRX33|MRX36|MRX38|MRX43|MRX54|MRX76|MRX87|MRXS1|PRTS aristaless related homeobox protein-coding 332-451 chr6 40549649 40549821 + 2 NA intron (NM_020737, intron 1 of 2) intron (NM_020737, intron 1 of 2) 37629 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 355-247 chr2 114598978 114599217 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 137520 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 456 chr1 49471646 49471942 + 2 NA intron (NR_046839, intron 1 of 3) L1MDa|LINE|L1 291 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 302-204 chr2 35618995 35619235 + 2 NA Intergenic L1MEg|LINE|L1 147710 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 186-160 chr8 83118892 83119027 + 2 NA Intergenic Intergenic 206855 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 218-302 chr7 36359972 36360164 + 2 NA intron (NM_001100425, intron 2 of 6) intron (NM_001100425, intron 2 of 6) 7172 NM_001199706 23366 Hs.6224 NM_015314 ENSG00000164542 KIAA0895 - KIAA0895 protein-coding 478-108 chr16 73865864 73866304 + 2 NA Intergenic AluJb|SINE|Alu 349437 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 231-296 chr5 130462410 130462597 + 2 NA Intergenic Intergenic 558038 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 341-449 chr5 149090890 149091171 + 2 NA intron (NR_122044, intron 2 of 2) THE1A-int|LTR|ERVL-MaLR 27713 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 506-74 chr13 59618016 59618419 + 2 NA Intergenic AluSz|SINE|Alu -394501 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 390-151 chr17 77625984 77626197 + 2 NA Intergenic L1MD1|LINE|L1 79149 NR_040050 100507351 Hs.514518 NR_040050 LOC100507351 - uncharacterized LOC100507351 ncRNA 437-157 chr20 22734475 22734832 + 2 NA Intergenic L1MC|LINE|L1 -49309 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 405-245 chr5 43247464 43247813 + 2 NA intron (NR_072980, intron 2 of 3) MER5B|DNA|hAT-Charlie 54786 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 397-20 chr1 218576516 218576867 + 2 NA intron (NR_031644, intron 2 of 6) intron (NR_031644, intron 2 of 6) 66596 NR_146760 440714 Hs.146774 NR_146760 ENSG00000228208 C1orf143 - chromosome 1 open reading frame 143 (putative) ncRNA 405-142 chr2 81722646 81722897 + 2 NA Intergenic Intergenic -255825 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 202-132 chr2 202732824 202733019 + 2 NA intron (NM_173511, intron 4 of 7) L1MB8|LINE|L1 96313 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 531-104 chr2 37622102 37622500 + 2 NA Intergenic Intergenic 49898 NM_001270437 10602 Hs.369574 NM_006449 ENSG00000163171 CDC42EP3 BORG2|CEP3|UB1 CDC42 effector protein 3 protein-coding 291-307 chr4 11971040 11971229 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 187956 NR_162127 113218507 NR_162127 MIR12113 - microRNA 12113 ncRNA 336-309 chr2 236649272 236649552 + 2 NA Intergenic L1ME1|LINE|L1 79587 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 304-337 chr3 74149957 74150138 + 2 NA Intergenic Intergenic 340803 NR_146637 105377165 NR_146637 LINC02005 - long intergenic non-protein coding RNA 2005 ncRNA 338-241 chr2 7588513 7588742 + 2 NA Intergenic Intergenic 167366 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 320-390 chr4 67008388 67008634 + 2 NA Intergenic Intergenic 413489 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 319-382 chr4 78010590 78010870 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -46593 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 281-419 chr7 79768908 79769088 + 2 NA Intergenic Intergenic 315038 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 353-39 chr1 228916393 228916629 + 2 NA Intergenic L2b|LINE|L2 181032 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 314-554 chr8 43595744 43596025 + 2 NA Intergenic ALR/Alpha|Satellite|centr 303442 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 669-71 chr3 21069444 21069945 + 2 NA Intergenic Intergenic -336032 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 348-374 chr4 106607232 106607530 + 2 NA Intergenic Intergenic 173757 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 298-12 chr1 89235225 89235461 + 2 NA Intergenic L1PA8A|LINE|L1 -36401 NM_052941 115361 Hs.409925 NM_052941 ENSG00000162654 GBP4 Mpa2 guanylate binding protein 4 protein-coding 325-222 chr17 60609532 60609758 + 2 NA intron (NM_003620, intron 1 of 5) MER44B|DNA|TcMar-Tigger 9462 NM_003620 8493 Hs.286073 NM_003620 ENSG00000170836 PPM1D IDDGIP|PP2C-DELTA|WIP1 protein phosphatase, Mg2+/Mn2+ dependent 1D protein-coding 767-27 chr2 117116926 117117509 + 2 NA Intergenic Intergenic -697474 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 333-189 chr17 63020761 63021011 + 2 NA intron (NM_025185, intron 2 of 25) MSTB|LTR|ERVL-MaLR 54651 NM_025185 26115 Hs.410889 NM_015623 ENSG00000170921 TANC2 ROLSA|rols tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 343-200 chr18 2375496 2375785 + 2 NA Intergenic L1PB1|LINE|L1 195865 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 450-307 chr8 116098487 116098789 + 2 NA intron (NR_046215, intron 7 of 13) intron (NR_046215, intron 7 of 13) 226421 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 390-350 chr7 47248442 47248689 + 2 NA Intergenic MIRb|SINE|MIR 216238 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 272-439 chr8 35266175 35266353 + 2 NA intron (NM_080872, intron 1 of 16) Charlie7|DNA|hAT-Charlie 30789 NM_080872 137970 Hs.238889 NM_080872 ENSG00000156687 UNC5D PRO34692|Unc5h4 unc-5 netrin receptor D protein-coding 318-333 chr21 31339188 31339478 + 2 NA 5' UTR (NM_001353692, exon 3 of 28) 5' UTR (NM_001353692, exon 3 of 28) 5021 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 265-52 chr11 4767083 4767272 + 2 NA Intergenic Intergenic 2761 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 220-146 chr19 44351824 44351984 + 2 NA intron (NM_001348281, intron 1 of 4) L1ME1|LINE|L1 4776 NM_001348285 7771 Hs.48589 NM_013380 ENSG00000062370 ZNF112 ZFP112|ZNF228 zinc finger protein 112 protein-coding 376-72 chr11 78765331 78765645 + 2 NA intron (NM_001098816, intron 18 of 33) intron (NM_001098816, intron 18 of 33) -190624 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 277-464 chrX 73594638 73594863 + 2 NA intron (NM_001300884, intron 3 of 4) L1MB4|LINE|L1 31602 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 699-98 chr7 80978824 80979391 + 2 NA Intergenic L1MEf|LINE|L1 -56718 NM_001350120 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 268-388 chr8 32484692 32484939 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) 44069 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 365-429 chr9 107447646 107447870 + 2 NA intron (NR_121581, intron 3 of 7) intron (NR_121581, intron 3 of 7) 18827 NR_121581 101928720 Hs.125496 NR_121581 LINC01509 PRCAT37 long intergenic non-protein coding RNA 1509 ncRNA 326-561 chr8 139500053 139500306 + 2 NA Intergenic Intergenic 202944 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 436-267 chr6 68147516 68147777 + 2 NA Intergenic MIR|SINE|MIR 92295 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 333-200 chr18 3564040 3564341 + 2 NA intron (NM_001242762, intron 6 of 9) L1MCa|LINE|L1 -29924 NR_024101 649446 Hs.19872 NM_001039796 DLGAP1-AS1 HsT914 DLGAP1 antisense RNA 1 ncRNA 779-56 chr8 104611290 104611872 + 2 NA Intergenic L1PA15|LINE|L1 -22557 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 213-276 chr8 86513415 86513614 + 2 NA promoter-TSS (NM_003909) promoter-TSS (NM_003909) 843 NM_001317807 51115 Hs.145386 NM_016033 ENSG00000176623 RMDN1 CGI-90|FAM82B|RMD-1|RMD1 regulator of microtubule dynamics 1 protein-coding 471-169 chr3 96399991 96400374 + 2 NA Intergenic Intergenic 40218 NR_107027 102465864 NR_107027 ENSG00000278103 MIR8060 hsa-mir-8060 microRNA 8060 ncRNA 493-22 chr1 232671558 232671914 + 2 NA Intergenic L1MA3|LINE|L1 -46335 NR_146922 105373199 Hs.254475 NR_146922 ENSG00000225919 LINC01745 - long intergenic non-protein coding RNA 1745 ncRNA 153-14 chr10 48697444 48697555 + 2 NA intron (NM_020945, intron 1 of 61) intron (NM_020945, intron 1 of 61) 12036 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 220-385 chr8 138926839 138927016 + 2 NA Intergenic Intergenic -12886 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 231-26 chr1 247040636 247040811 + 2 NA intron (NM_033213, intron 1 of 3) AluSq2|SINE|Alu -32666 NR_037892 57116 Hs.669893 NM_020394 ENSG00000197472 ZNF695 SBZF3 zinc finger protein 695 protein-coding 227-107 chr14 59890683 59890849 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB -19990 NM_021136 6252 Hs.368626 NM_021136 ENSG00000139970 RTN1 NSP reticulon 1 protein-coding 284-150 chr16 72227283 72227494 + 2 NA Intergenic L1ME4a|LINE|L1 -54938 NM_001160213 83449 Hs.714939 NM_031293 ENSG00000118557 PMFBP1 SPGF31|STAP polyamine modulated factor 1 binding protein 1 protein-coding 450-191 chr3 34835284 34835695 + 2 NA Intergenic Intergenic 558534 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 286-373 chr5 166235481 166235701 + 2 NA Intergenic L1MB3|LINE|L1 690779 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 563-202 chrX 86431334 86431730 + 2 NA intron (NM_001139515, intron 2 of 11) intron (NM_001139515, intron 2 of 11) 168564 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 398-10 chr1 97914509 97914802 + 2 NA intron (NM_000110, intron 1 of 22) intron (NM_000110, intron 1 of 22) 6404 NM_001160301 1806 Hs.335034 NM_000110 ENSG00000188641 DPYD DHP|DHPDHASE|DPD dihydropyrimidine dehydrogenase protein-coding 154-65 chr21 33641461 33641609 + 2 NA promoter-TSS (NM_001331012) promoter-TSS (NM_001331012) 206 NM_145858 9946 Hs.352671 NM_145311 ENSG00000205758 CRYZL1 4P11|QOH-1 crystallin zeta like 1 protein-coding 422-209 chr4 38451093 38451383 + 2 NA non-coding (NR_110951, exon 5 of 8) non-coding (NR_110951, exon 5 of 8) -58529 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 252-128 chr15 59477495 59477662 + 2 NA intron (NM_152450, intron 3 of 8) intron (NM_152450, intron 3 of 8) 39392 NM_152450 145773 Hs.531168 NM_152450 ENSG00000157470 FAM81A - family with sequence similarity 81 member A protein-coding 272-265 chr3 53632915 53633133 + 2 NA intron (NM_001128840, intron 3 of 47) Tigger1|DNA|TcMar-Tigger 138413 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 303-372 chr5 116520908 116521162 + 2 NA intron (NM_001300780, intron 1 of 19) intron (NM_001300780, intron 1 of 19) -53383 NR_147170 105379132 NR_147170 SEMA6A-AS2 - SEMA6A antisense RNA 2 ncRNA 238-47 chr10 91521407 91521643 + 2 NA intron (NR_024467, intron 3 of 4) intron (NR_024467, intron 3 of 4) 89935 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 382-402 chr8 53269399 53269657 + 2 NA Intergenic HERVIP10B3-int|LTR|ERV1 -17831 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 235-35 chr10 34029687 34029907 + 2 NA Intergenic Intergenic -257117 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 373-329 chr5 105940356 105940637 + 2 NA Intergenic MIR|SINE|MIR 841022 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 340-86 chr11 95932396 95932633 + 2 NA Intergenic L1M4|LINE|L1 -8307 NM_016156 8898 Hs.181326 NM_016156 ENSG00000087053 MTMR2 CMT4B|CMT4B1 myotubularin related protein 2 protein-coding 387-227 chr3 94940483 94940830 + 2 NA intron (NR_015400, intron 1 of 7) Charlie8|DNA|hAT-Charlie 2393 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 397-33 chr10 64573628 64573918 + 2 NA Intergenic L1MB7|LINE|L1 -251755 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 467-155 chr20 45165591 45166031 + 2 NA Intergenic L1PA15|LINE|L1 -9091 NM_002638 5266 Hs.112341 NM_002638 ENSG00000124102 PI3 ESI|SKALP|WAP3|WFDC14|cementoin peptidase inhibitor 3 protein-coding 242-359 chr7 10681620 10681802 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) -20965 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 188-134 chr3 104592717 104592849 + 2 NA Intergenic Intergenic -773930 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 305-341 chr3 20661659 20661884 + 2 NA Intergenic L1ME2|LINE|L1 319303 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 384-360 chr8 6673231 6673563 + 2 NA intron (NR_125386, intron 1 of 4) L1MA5|LINE|L1 34812 NR_125386 100507530 Hs.490892 NR_125386 MCPH1-AS1 - MCPH1 antisense RNA 1 ncRNA 273-155 chr16 47605356 47605562 + 2 NA intron (NM_001031835, intron 14 of 31) intron (NM_001031835, intron 14 of 31) 144128 NM_001031835 5257 Hs.78060 NM_000293 ENSG00000102893 PHKB - phosphorylase kinase regulatory subunit beta protein-coding 182-160 chr6 162238385 162238518 + 2 NA intron (NM_004562, intron 3 of 11) intron (NM_004562, intron 3 of 11) -488681 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 167-55 chr2 72744383 72744510 + 2 NA intron (NR_135774, intron 1 of 19) intron (NR_135774, intron 1 of 19) 81587 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 309-16 chr1 156876975 156877199 + 2 NA intron (NM_002529, intron 14 of 16) FRAM|SINE|Alu 16208 NM_001012331 4914 Hs.406293 NM_002529 ENSG00000198400 NTRK1 MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA neurotrophic receptor tyrosine kinase 1 protein-coding 304-545 chr9 37702018 37702230 + 2 NA intron (NM_001371225, intron 2 of 15) intron (NM_001371225, intron 2 of 15) 34115 NM_001371223 255-72 chr12 23093960 23094123 + 2 NA Intergenic L1ME3|LINE|L1 -81595 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 407-359 chrX 145680691 145680933 + 2 NA Intergenic Intergenic -137017 NM_001144003 84631 Hs.106688 NM_032539 ENSG00000185985 SLITRK2 CXorf1|CXorf2|SLITL1|TMEM257 SLIT and NTRK like family member 2 protein-coding 399-33 chr10 49363398 49363736 + 2 NA TTS (NM_001276451) TTS (NM_001276451) 32522 NM_001276451 644168 Hs.534530 NM_001080520 ENSG00000165606 DRGX DRG11|PRRXL1 dorsal root ganglia homeobox protein-coding 358-176 chr19 22752328 22752621 + 2 NA 3' UTR (NM_001080409, exon 4 of 4) 3' UTR (NM_001080409, exon 4 of 4) 31677 NM_001080409 7652 Hs.737077 NM_001080409 ENSG00000213973 ZNF99 C19orf9|F8281 zinc finger protein 99 protein-coding 366-142 chr15 63972895 63973121 + 2 NA intron (NM_014326, intron 3 of 11) MLT1A0-int|LTR|ERVL-MaLR 44734 NR_120344 101928988 Hs.673214 NR_120344 ENSG00000259351 LOC101928988 - uncharacterized LOC101928988 ncRNA 209-48 chr10 116811249 116811405 + 2 NA intron (NM_001330164, intron 2 of 12) intron (NM_001330164, intron 2 of 12) 16241 NR_162126 113218494 NR_162126 MIR9851 - microRNA 9851 ncRNA 277-332 chr5 106633546 106633804 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 377339 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 409-3 chr1 74290957 74291203 + 2 NA intron (NM_015978, intron 5 of 24) L1ME3B|LINE|L1 55693 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 223-53 chr11 90159030 90159190 + 2 NA intron (NM_001300930, intron 7 of 17) L2a|LINE|L2 24447 NM_005467 10003 Hs.112482 NM_005467 ENSG00000077616 NAALAD2 GCPIII|GPCIII|NAADALASE2|NAALADASE2 N-acetylated alpha-linked acidic dipeptidase 2 protein-coding 391-130 chr16 79265767 79266098 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger 334805 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 332-452 chr6 40935509 40935747 + 2 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 87652 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 304-410 chr5 33568431 33568690 + 2 NA intron (NM_001324512, intron 17 of 21) intron (NM_001324512, intron 17 of 21) 127784 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 176-137 chr8 46157753 46157915 + 2 NA Intergenic ALR/Alpha|Satellite|centr 459809 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 305-115 chr12 22745150 22745378 + 2 NA Intergenic L1MEf|LINE|L1 120093 NM_018638 55500 Hs.29464 NM_018638 ENSG00000139163 ETNK1 EKI|EKI 1|EKI1|Nbla10396 ethanolamine kinase 1 protein-coding 329-517 chr6 162189931 162190170 + 2 NA intron (NM_004562, intron 4 of 11) intron (NM_004562, intron 4 of 11) -537082 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 801-20 chr17 53887287 53887837 + 2 NA Intergenic L1MA10|LINE|L1 64635 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 262-447 chr9 13260813 13261052 + 2 NA intron (NM_001330637, intron 1 of 46) MLT1M|LTR|ERVL-MaLR 18632 NM_001261406 8777 Hs.169378 NM_003829 ENSG00000107186 MPDZ HYC2|MUPP1 multiple PDZ domain crumbs cell polarity complex component protein-coding 269-127 chr14 102364914 102365154 + 2 NA intron (NM_014844, intron 1 of 19) intron (NM_014844, intron 1 of 19) 2093 NM_001172631 9895 Hs.195667 NM_014844 ENSG00000196663 TECPR2 KIAA0329|SPG49 tectonin beta-propeller repeat containing 2 protein-coding 380-63 chr11 27790549 27790917 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -68703 NM_170731 627 Hs.502182 NM_001709 ENSG00000176697 BDNF ANON2|BULN2 brain derived neurotrophic factor protein-coding 352-502 chr7 68398878 68399133 + 2 NA Intergenic (TTG)n|Simple_repeat|Simple_repeat 378752 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 282-4 chr1 48954927 48955095 + 2 NA intron (NM_001323575, intron 5 of 12) MIRb|SINE|MIR -178042 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 338-59 chr10 53755265 53755469 + 2 NA Intergenic Intergenic -730863 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 402-261 chr5 22323733 22324067 + 2 NA intron (NM_001364104, intron 2 of 13) MIRc|SINE|MIR -110050 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 652-32 chr12 94430530 94430922 + 2 NA intron (NM_001368042, intron 1 of 5) L1MA4A|LINE|L1 29141 NM_001346457 51134 Hs.279209 NM_016122 ENSG00000173588 CEP83 CCDC41|NPHP18|NY-REN-58 centrosomal protein 83 protein-coding 511-103 chr19 23194472 23194818 + 2 NA Intergenic Intergenic 55749 NM_001355404 440519 Hs.675814 NM_001355404 ENSG00000196081 ZNF724 ZNF724P zinc finger protein 724 protein-coding 302-17 chr1 164247660 164247926 + 2 NA Intergenic L2a|LINE|L2 -311567 NM_001204961 5087 Hs.557097 NM_002585 ENSG00000185630 PBX1 CAKUHED PBX homeobox 1 protein-coding 162-21 chr11 42907008 42907117 + 2 NA Intergenic L3|LINE|CR1 362307 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 258-331 chr5 115688000 115688156 + 2 NA Intergenic AluSx|SINE|Alu -15426 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 491-91 chr17 68531856 68532172 + 2 NA 3' UTR (NM_001369389, exon 12 of 12) 3' UTR (NM_001369389, exon 12 of 12) 16620 NM_001276290 5573 Hs.280342 NM_002734 ENSG00000108946 PRKAR1A ACRDYS1|ADOHR|CAR|CNC|CNC1|PKR1|PPNAD1|PRKAR1|TSE1 protein kinase cAMP-dependent type I regulatory subunit alpha protein-coding 406-279 chr7 69663016 69663239 + 2 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 64652 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 313-487 chr7 15173710 15173973 + 2 NA Intergenic HAL1b|LINE|L1 -198983 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 358-27 chr1 219430360 219430683 + 2 NA Intergenic Intergenic 126803 NR_135822 102723886 Hs.525963 NR_135822 LYPLAL1-AS1 - LYPLAL1 antisense RNA 1 ncRNA 299-146 chr15 23720085 23720346 + 2 NA Intergenic L1MEf|LINE|L1 -32910 NM_002487 4692 Hs.50130 NM_002487 ENSG00000182636 NDN HsT16328|PWCR necdin, MAGE family member protein-coding 859-28 chr3 166968392 166968929 + 2 NA Intergenic L1MA6|LINE|L1 69977 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 513-59 chr12 60694713 60695037 + 2 NA Intergenic Intergenic 1005505 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 201-74 chr14 46659206 46659342 + 2 NA Intergenic Intergenic -7493 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 452-139 chr2 147834992 147835260 + 2 NA Intergenic L1ME3|LINE|L1 -9391 NM_001278580 92 Hs.470174 NM_001616 ENSG00000121989 ACVR2A ACTRII|ACVR2 activin A receptor type 2A protein-coding 234-140 chr18 2900012 2900177 + 2 NA intron (NM_032048, intron 4 of 7) intron (NM_032048, intron 4 of 7) 46529 NR_026659 727896 Hs.673126 NR_026659 LOC727896 - cysteine and histidine rich domain containing 1 pseudogene pseudo 128-72 chr7 100520494 100520608 + 2 NA Intergenic Intergenic -18652 NM_006076 3268 Hs.521083 NM_006076 ENSG00000106351 AGFG2 HRBL|RABR ArfGAP with FG repeats 2 protein-coding 273-458 chr8 123727207 123727444 + 2 NA intron (NM_004306, intron 1 of 10) intron (NM_004306, intron 1 of 10) 10068 NM_001003954 312 Hs.181107 NM_004306 ENSG00000104537 ANXA13 ANX13|ISA annexin A13 protein-coding 334-444 chr5 148465921 148466165 + 2 NA intron (NM_199453, intron 5 of 6) intron (NM_199453, intron 5 of 6) 82085 NM_030793 81545 Hs.483772 NM_030793 ENSG00000145868 FBXO38 Fbx38|HMN2D|MOKA|SP329 F-box protein 38 protein-coding 432-237 chr5 156631061 156631442 + 2 NA intron (NM_001128209, intron 5 of 7) intron (NM_001128209, intron 5 of 7) -219044 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 269-23 chr1 167293423 167293597 + 2 NA intron (NM_001365848, intron 2 of 17) L1PB3|LINE|L1 -35560 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 464-166 chr3 105643752 105644132 + 2 NA Intergenic Intergenic 223649 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 321-437 chr4 156361698 156361901 + 2 NA Intergenic Intergenic -407933 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 539-221 chrX 75802723 75803253 + 2 NA Intergenic L1PB2|LINE|L1 -17734 NM_138703 139599 Hs.356869 NM_138703 ENSG00000186675 MAGEE2 HCA3 MAGE family member E2 protein-coding 697-13 chr11 114951856 114952321 + 2 NA Intergenic Intergenic 273561 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 297-192 chr19 49788132 49788366 + 2 NA intron (NM_130787, intron 4 of 22) L1MB7|LINE|L1 -3617 NR_106857 102465479 NR_106857 ENSG00000276270 MIR6799 hsa-mir-6799 microRNA 6799 ncRNA 228-112 chr15 60979467 60979622 + 2 NA intron (NM_134261, intron 1 of 10) L1MB7|LINE|L1 249758 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 378-412 chr7 78747058 78747250 + 2 NA intron (NM_001301128, intron 2 of 20) intron (NM_001301128, intron 2 of 20) -261834 NR_046689 100874021 Hs.128252 NR_046689 ENSG00000226978 MAGI2-AS2 - MAGI2 antisense RNA 2 ncRNA 560-21 chr10 69747268 69747818 + 2 NA Intergenic Intergenic -54363 NM_080800 1305 Hs.695934 NM_005203 ENSG00000197467 COL13A1 CMS19|COLXIIIA1 collagen type XIII alpha 1 chain protein-coding 500-85 chr14 81787559 81787929 + 2 NA Intergenic LTR49|LTR|ERV1 -44606 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 547-155 chr4 48350107 48350476 + 2 NA intron (NM_020846, intron 1 of 7) intron (NM_020846, intron 1 of 7) 8762 NM_020846 57606 Hs.479677 NM_020846 ENSG00000109171 SLAIN2 KIAA1458 SLAIN motif family member 2 protein-coding 400-213 chr3 59313638 59314036 + 2 NA Intergenic Intergenic -263805 NR_147235 200844 Hs.368434 NM_198463 ENSG00000163689 C3orf67 - chromosome 3 open reading frame 67 protein-coding 291-91 chr12 25496005 25496271 + 2 NA TTS (NM_001352232) TTS (NM_001352232) 57145 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 312-95 chr12 2572094 2572267 + 2 NA intron (NM_199460, intron 13 of 49).2 intron (NM_199460, intron 13 of 49).2 100040 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 341-108 chr12 18740411 18740656 + 2 NA Intergenic Intergenic 2414 NM_033328 93661 Hs.131288 NM_033328 ENSG00000177938 CAPZA3 CAPPA3|Gsg3|HEL-S-86 capping actin protein of muscle Z-line subunit alpha 3 protein-coding 244-356 chr8 24565187 24565342 + 2 NA Intergenic L1MEg|LINE|L1 -16646 NR_125808 101929294 Hs.637673 NR_125808 LOC101929294 - uncharacterized LOC101929294 ncRNA 323-6 chr1 51527800 51528000 + 2 NA Intergenic AluSz6|SINE|Alu -8634 NM_001981 2060 Hs.83722 NM_001981 ENSG00000085832 EPS15 AF-1P|AF1P|MLLT5 epidermal growth factor receptor pathway substrate 15 protein-coding 243-483 chr9 129301982 129302147 + 2 NA Intergenic L1MDa|LINE|L1 -18952 NR_149714 414318 Hs.449434 NR_149714 C9orf106 - chromosome 9 open reading frame 106 (putative) ncRNA 294-241 chr2 172572985 172573263 + 2 NA intron (NM_002610, intron 8 of 10) L1MB7|LINE|L1 17034 NM_002610 5163 Hs.470633 NM_002610 ENSG00000152256 PDK1 - pyruvate dehydrogenase kinase 1 protein-coding 319-407 chr5 39881774 39882042 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -170383 NR_104633 102467077 Hs.148993 NR_104633 LINC00603 - long intergenic non-protein coding RNA 603 ncRNA 504-52 chr12 37878573 37878944 + 2 NA Intergenic ALR/Alpha|Satellite|centr -438016 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 198-181 chr4 85224945 85225105 + 2 NA Intergenic L1PA16|LINE|L1 -250125 NM_001025616 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 515-91 chr17 80231779 80232205 + 2 NA intron (NM_001166348, intron 6 of 16) L1MEc|LINE|L1 11565 NM_001166349 284129 Hs.4866 NM_173626 ENSG00000181045 SLC26A11 - solute carrier family 26 member 11 protein-coding 666-115 chr8 123558210 123558668 + 2 NA Intergenic Intergenic -17233 NM_058229 114907 Hs.403933 NM_058229 ENSG00000156804 FBXO32 Fbx32|MAFbx F-box protein 32 protein-coding 238-254 chr4 16810249 16810447 + 2 NA intron (NM_001304435, intron 1 of 7) intron (NM_001304435, intron 1 of 7) 88297 NM_001304434 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 272-423 chr7 68012053 68012213 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -8120 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 487-109 chr17 35537903 35538298 + 2 NA promoter-TSS (NM_001363830) promoter-TSS (NM_001363830) -239 NM_001363830 100506736 Hs.447559 NM_001145027 ENSG00000205045 SLFN12L - schlafen family member 12 like protein-coding 219-275 chr5 19915661 19915807 + 2 NA intron (NM_001349562, intron 2 of 13) intron (NM_001349562, intron 2 of 13) -29462 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 228-320 chr7 66128935 66129101 + 2 NA intron (NM_001142414, intron 2 of 4) AluJr|SINE|Alu 14171 NM_014478 27297 Hs.300684 NM_014478 ENSG00000241258 CRCP CGRP-RCP|CGRPRCP|RCP|RCP9|RPC9 CGRP receptor component protein-coding 305-350 chr3 85748421 85748690 + 2 NA intron (NM_001256504, intron 3 of 10) UCON105|Unknown|Unknown 22073 NM_153184 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 264-160 chr16 84237232 84237436 + 2 NA exon (NM_172347, exon 2 of 3) exon (NM_172347, exon 2 of 3) 2416 NM_172347 93107 Hs.335877 NM_133490 ENSG00000168418 KCNG4 KV6.3|KV6.4 potassium voltage-gated channel modifier subfamily G member 4 protein-coding 319-81 chr10 121639351 121639611 + 2 NA Intergenic Intergenic -41023 NM_000141 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 501-99 chr2 49093948 49094276 + 2 NA intron (NM_000145, intron 1 of 9) L1ME1|LINE|L1 34509 NR_107011 102465854 NR_107011 ENSG00000212036 MIR548BA hsa-mir-548ba microRNA 548ba ncRNA 233-354 chr7 40484503 40484637 + 2 NA intron (NM_024728, intron 11 of 14) intron (NM_024728, intron 11 of 14) 349594 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 250-188 chr2 15598833 15599045 + 2 NA intron (NM_004939, intron 5 of 25) intron (NM_004939, intron 5 of 25) 7071 NM_004939 1653 Hs.440599 NM_004939 ENSG00000079785 DDX1 DBP-RB|UKVH5d DEAD-box helicase 1 protein-coding 341-50 chr1 242407916 242408128 + 2 NA intron (NM_001320272, intron 2 of 10) intron (NM_001320272, intron 2 of 10) 41446 NM_001195812 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 293-223 chr2 220867062 220867232 + 2 NA Intergenic MER21C|LTR|ERVL 705157 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 330-509 chr8 59715135 59715401 + 2 NA Intergenic Intergenic 566132 NM_001321839 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 364-250 chr20 57538077 57538411 + 2 NA Intergenic Intergenic -12592 NM_001269051 140690 Hs.131543 NM_080618 ENSG00000124092 CTCFL BORIS|CT27|CTCF-T|HMGB1L1|dJ579F20.2 CCCTC-binding factor like protein-coding 245-159 chr17 59099246 59099465 + 2 NA intron (NM_001320987, intron 1 of 22) Tigger3c|DNA|TcMar-Tigger 7525 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 431-7 chr1 40651283 40651681 + 2 NA intron (NM_014747, intron 1 of 7) MLT1C|LTR|ERVL-MaLR 14200 NM_014747 9783 Hs.654808 NM_014747 ENSG00000117016 RIMS3 NIM3|RIM 3|RIM3 regulating synaptic membrane exocytosis 3 protein-coding 243-29 chr1 246825557 246825764 + 2 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 36043 NR_015422 149134 Hs.720494 NM_207326 LINC01341 - long intergenic non-protein coding RNA 1341 ncRNA 369-167 chr18 64314102 64314306 + 2 NA intron (NR_033881, intron 5 of 9) L1MC1|LINE|L1 -54149 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 348-226 chr2 71956529 71956841 + 2 NA Intergenic L1PA16|LINE|L1 191177 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 334-439 chr5 136393758 136393962 + 2 NA Intergenic L1M5|LINE|L1 -28384 NM_001167576 57113 Hs.591263 NM_020389 ENSG00000069018 TRPC7 TRP7 transient receptor potential cation channel subfamily C member 7 protein-coding 348-333 chr3 170942016 170942235 + 2 NA Intergenic L1ME2z|LINE|L1 -33488 NM_020390 56648 Hs.164144 NM_020390 ENSG00000163577 EIF5A2 EIF-5A2|eIF5AII eukaryotic translation initiation factor 5A2 protein-coding 273-308 chr3 177398753 177398978 + 2 NA Intergenic Tigger17a|DNA|TcMar-Tigger -43056 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 487-46 chr10 97054007 97054336 + 2 NA intron (NM_003061, intron 13 of 36) MSTB|LTR|ERVL-MaLR -48585 NR_038330 100505540 Hs.568878 NR_038330 ENSG00000234855 SLIT1-AS1 - SLIT1 antisense RNA 1 ncRNA 255-213 chr2 180499136 180499294 + 2 NA Intergenic L1MCc|LINE|L1 -192889 NR_104325 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 324-262 chr2 67175518 67175793 + 2 NA intron (NR_038844, intron 3 of 7) intron (NR_038844, intron 3 of 7) -37753 NR_110568 101927661 Hs.580508 NR_110568 ENSG00000235885 LOC101927661 - uncharacterized LOC101927661 ncRNA 510-94 chr16 20567691 20568105 + 2 NA intron (NM_001105069, intron 1 of 13) (AATATAT)n|Simple_repeat|Simple_repeat 8469 NM_001105069 348158 Hs.298252 NM_182617 ENSG00000066813 ACSM2B ACSM2|HXMA|HYST1046 acyl-CoA synthetase medium chain family member 2B protein-coding 128-86 chr9 115094556 115094623 + 2 NA intron (NM_002160, intron 1 of 27) L3b|LINE|CR1 23568 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 280-252 chr3 39708313 39708466 + 2 NA Intergenic Intergenic -100525 NM_001284423 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 231-358 chr8 121547992 121548147 + 2 NA Intergenic Intergenic -91277 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 204-134 chr2 10268683 10268857 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -34134 NM_002149 3241 Hs.580427 NM_002149 ENSG00000115756 HPCAL1 BDR1|HLP2|VILIP-3 hippocalcin like 1 protein-coding 155-63 chr22 48799090 48799210 + 2 NA Intergenic Tigger6a|DNA|TcMar-Tigger 18855 NR_039761 100616415 NR_039761 ENSG00000266887 MIR4535 - microRNA 4535 ncRNA 342-204 chr18 34515664 34515988 + 2 NA intron (NM_001198945, intron 1 of 10) intron (NM_001198945, intron 1 of 10) 22514 NM_001392 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 258-126 chr14 60408948 60409125 + 2 NA Intergenic L1PA15-16|LINE|L1 77027 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 386-317 chr7 283387 283582 + 2 NA Intergenic Intergenic 90913 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 174-49 chr16 48261600 48261723 + 2 NA intron (NM_031490, intron 5 of 14) intron (NM_031490, intron 5 of 14) -14122 NM_001370497 85320 Hs.652267 NM_032583 ENSG00000121270 ABCC11 EWWD|MRP8|WW ATP binding cassette subfamily C member 11 protein-coding 200-284 chr9 27439236 27439391 + 2 NA intron (NM_024761, intron 2 of 3) intron (NM_024761, intron 2 of 3) -85001 NM_020124 56832 Hs.591083 NM_020124 ENSG00000147896 IFNK IFNT1|INFE1 interferon kappa protein-coding 442-62 chr13 24132611 24133026 + 2 NA intron (NM_001286792, intron 3 of 14) AluSx|SINE|Alu -27902 NM_153023 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 581-58 chr17 54712984 54713433 + 2 NA Intergenic LTR12D|LTR|ERV1 -187483 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 404-99 chr14 57128135 57128405 + 2 NA Intergenic Intergenic 140635 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 161-136 chr9 27843408 27843538 + 2 NA Intergenic MIR|SINE|MIR -269607 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 313-133 chr13 114326235 114326514 + 2 NA 3' UTR (NM_032436, exon 3 of 3) 3' UTR (NM_032436, exon 3 of 3) 7574 NR_126391 104355150 Hs.569217 NR_126391 LINC01054 - long intergenic non-protein coding RNA 1054 ncRNA 420-74 chr14 35487681 35488037 + 2 NA Intergenic L1MB4|LINE|L1 -46305 NM_032594 84684 Hs.62813 NM_032594 ENSG00000168348 INSM2 IA-6|IA6|mlt1 INSM transcriptional repressor 2 protein-coding 372-383 chr5 5947792 5947997 + 2 NA Intergenic L1MB8|LINE|L1 389398 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 313-542 chr8 134511805 134512100 + 2 NA intron (NM_020863, intron 14 of 15) intron (NM_020863, intron 14 of 15) -86119 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 375-370 chr7 33485335 33485675 + 2 NA intron (NM_001348037, intron 18 of 20) AluYm1|SINE|Alu 355941 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 449-208 chr5 31827880 31828226 + 2 NA intron (NM_178140, intron 2 of 24) L1MB8|LINE|L1 108106 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 364-118 chr13 58028557 58028853 + 2 NA Intergenic Intergenic -137122 NR_120416 101926897 Hs.640215 NR_120416 ENSG00000277448 LINC02338 - long intergenic non-protein coding RNA 2338 ncRNA 392-161 chr2 154889468 154889687 + 2 NA Intergenic L1M3f|LINE|L1 190882 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 233-370 chr8 79041630 79041784 + 2 NA Intergenic HAL1|LINE|L1 204178 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 420-266 chr7 42443067 42443332 + 2 NA Intergenic L1PA15|LINE|L1 -205990 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 298-441 chr7 98391806 98392005 + 2 NA intron (NM_018842, intron 1 of 13) intron (NM_018842, intron 1 of 13) 9185 NM_018842 55971 Hs.656063 NM_018842 ENSG00000006453 BAIAP2L1 IRTKS BAI1 associated protein 2 like 1 protein-coding 278-140 chr16 4853369 4853562 + 2 NA intron (NM_001079514, intron 2 of 17) intron (NM_001079514, intron 2 of 17) 5085 NM_001288656 29855 Hs.440219 NM_016936 ENSG00000118900 UBN1 VT|VT4 ubinuclein 1 protein-coding 349-219 chr18 60394931 60395150 + 2 NA Intergenic (AATTT)n|Simple_repeat|Simple_repeat -22265 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 263-168 chr18 35083039 35083218 + 2 NA intron (NM_001143827, intron 3 of 7) intron (NM_001143827, intron 3 of 7) 41715 NR_046177 10982 Hs.532824 NM_014268 ENSG00000166974 MAPRE2 CSCSC2|EB1|EB2|RP1 microtubule associated protein RP/EB family member 2 protein-coding 410-158 chr2 212607166 212607472 + 2 NA Intergenic L2a|LINE|L2 -68517 NM_005235 2066 Hs.390729 NM_005235 ENSG00000178568 ERBB4 ALS19|HER4|p180erbB4 erb-b2 receptor tyrosine kinase 4 protein-coding 340-377 chr3 161804198 161804536 + 2 NA Intergenic Intergenic 307559 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 560-188 chr8 126704253 126704770 + 2 NA Intergenic L1MB8|LINE|L1 -146033 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 468-247 chr5 45831989 45832340 + 2 NA Intergenic Intergenic -135784 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 282-372 chr5 43854866 43855087 + 2 NA Intergenic Intergenic -251746 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 469-236 chr5 178718601 178718915 + 2 NA intron (NM_005649, intron 4 of 4) AluJr|SINE|Alu 11901 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 231-198 chr21 27229139 27229300 + 2 NA Intergenic Intergenic -262131 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 368-302 chr3 118443494 118443684 + 2 NA Intergenic MER54B|LTR|ERVL -198179 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 355-264 chr2 191508284 191508565 + 2 NA Intergenic Intergenic -169648 NR_045622 64859 Hs.591610 NM_022837 ENSG00000173559 NABP1 OBFC2A|SOSS-B2|SSB2 nucleic acid binding protein 1 protein-coding 296-508 chrX 89167602 89167766 + 2 NA Intergenic L1PB1|LINE|L1 420459 NM_033048 53336 Hs.458292 NM_033048 ENSG00000147183 CPXCR1 CT77 CPX chromosome region candidate 1 protein-coding 333-538 chr7 60263004 60263170 + 2 NA Intergenic ALR/Alpha|Satellite|centr 2812910 NM_001159279 441234 Hs.533121 NM_001159279 ENSG00000182111 ZNF716 - zinc finger protein 716 protein-coding 582-147 chr8 46539878 46540246 + 2 NA Intergenic ALR/Alpha|Satellite|centr 77581 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 718-7 chr1 164905586 164906012 + 2 NA Intergenic Intergenic -131158 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 644-59 chr3 61141789 61142254 + 2 NA intron (NR_148922, intron 2 of 3) intron (NR_148922, intron 2 of 3) 109431 NM_002012 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 210-291 chr8 105123516 105123675 + 2 NA Intergenic Intergenic -194843 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 500-114 chr18 72285447 72285801 + 2 NA Intergenic Intergenic 258718 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 344-486 chr8 57909936 57910148 + 2 NA Intergenic Intergenic -68316 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 315-486 chr8 107030224 107030453 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -260094 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 555-150 chr4 96434692 96435174 + 2 NA intron (NR_147149, intron 1 of 3) AluJb|SINE|Alu 124230 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 310-129 chr14 45426278 45426453 + 2 NA Intergenic L1M2|LINE|L1 -173163 NM_018353 55320 Hs.732769 NM_018353 ENSG00000129534 MIS18BP1 C14orf106|HSA242977|KNL2|M18BP1 MIS18 binding protein 1 protein-coding 240-439 chr9 88252675 88252848 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -114280 NM_001350978 645961 Hs.632070 NM_001166137 SPATA31C2 FAM75C2 SPATA31 subfamily C member 2 protein-coding 478-305 chr9 30270328 30270714 + 2 NA Intergenic Intergenic 137933 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 304-456 chr6 40206659 40206889 + 2 NA Intergenic L1MA9|LINE|L1 149232 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 351-88 chr12 18310070 18310305 + 2 NA intron (NM_001288774, intron 5 of 32) Tigger13a|DNA|TcMar-Tigger 48647 NM_004570 5288 Hs.22500 NM_004570 ENSG00000139144 PIK3C2G PI3K-C2-gamma|PI3K-C2GAMMA phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma protein-coding 258-320 chr5 52515126 52515356 + 2 NA Intergenic L1MA2|LINE|L1 -272675 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 365-402 chr8 92025719 92025996 + 2 NA intron (NM_001198633, intron 1 of 10) intron (NM_001198633, intron 1 of 10) -8177 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 305-36 chr1 188503588 188503801 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 1060066 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 311-559 chrX 77098729 77099016 + 2 NA Intergenic L2b|LINE|L2 -84340 NR_110401 101928469 Hs.640805 NR_110400 ENSG00000280870 MIR325HG MIR384HG MIR325 host gene ncRNA 288-413 chr7 80811666 80811869 + 2 NA intron (NM_006379, intron 5 of 17) intron (NM_006379, intron 5 of 17) 107284 NM_006379 10512 Hs.269109 NM_006379 ENSG00000075223 SEMA3C SEMAE|SemE semaphorin 3C protein-coding 259-316 chr5 64176171 64176406 + 2 NA intron (NM_001113561, intron 1 of 7) L1MA6|LINE|L1 10445 NM_001323291 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 381-163 chr19 29101492 29101853 + 2 NA Intergenic MER21B|LTR|ERVL 99117 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 287-130 chr14 46113685 46113876 + 2 NA intron (NR_102702, intron 1 of 3) THE1C|LTR|ERVL-MaLR 49621 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 307-398 chr5 133148721 133148939 + 2 NA Intergenic Intergenic 96817 NM_002154 3308 Hs.90093 NM_002154 ENSG00000170606 HSPA4 APG-2|HEL-S-5a|HS24/P52|HSPH2|RY|hsp70|hsp70RY heat shock protein family A (Hsp70) member 4 protein-coding 321-228 chr17 12209011 12209313 + 2 NA Intergenic Kanga1a|DNA|TcMar-Tc2 127263 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 293-93 chr12 114229037 114229200 + 2 NA Intergenic Intergenic 12652 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 311-413 chr5 95325131 95325331 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -40656 NM_024717 79772 Hs.591248 NM_024717 ENSG00000175471 MCTP1 - multiple C2 and transmembrane domain containing 1 protein-coding 337-316 chr20 58485388 58485619 + 2 NA intron (NR_130908, intron 1 of 1) intron (NR_130908, intron 1 of 1) 29435 NR_130908 164284 Hs.119286 NM_153360 ENSG00000198768 APCDD1L - APC down-regulated 1 like protein-coding 160-121 chr8 87687171 87687283 + 2 NA Intergenic Intergenic 186788 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 349-19 chr1 94451870 94452087 + 2 NA intron (NM_002858, intron 1 of 22) intron (NM_002858, intron 1 of 22) 33589 NM_002858 5825 Hs.700576 NM_002858 ENSG00000117528 ABCD3 ABC43|CBAS5|PMP70|PXMP1|ZWS2 ATP binding cassette subfamily D member 3 protein-coding 127-45 chr2 24785961 24786052 + 2 NA Intergenic Intergenic -7109 NM_024322 79172 Hs.731569 NM_024322 ENSG00000138092 CENPO CENP-O|ICEN-36|MCM21R centromere protein O protein-coding 351-275 chr21 28811950 28812256 + 2 NA Intergenic Intergenic 73264 NM_013240 29104 Hs.163846 NM_013240 ENSG00000156239 N6AMT1 C21orf127|HEMK2|MTQ2|N6AMT|PRED28|m.HsaHemK2P N-6 adenine-specific DNA methyltransferase 1 protein-coding 372-165 chr15 67882667 67882905 + 2 NA Intergenic L2a|LINE|L2 -42741 NR_104088 101954278 NR_104088 ENSG00000202337 RNU6-8 U6-8 RNA, U6 small nuclear 8 snRNA 349-498 chr8 79079009 79079210 + 2 NA Intergenic Intergenic 241580 NR_157588 112935892 NR_157588 LINC02605 - long intergenic non-protein coding RNA 2605 ncRNA 301-46 chr10 82706879 82707065 + 2 NA intron (NR_163253, intron 3 of 10) AluSz|SINE|Alu -474052 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 583-27 chr11 24481425 24481947 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -15367 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 584-109 chr3 174464766 174465156 + 2 NA Intergenic Intergenic -394373 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 139-8 chr10 98617390 98617515 + 2 NA intron (NM_021828, intron 8 of 11) intron (NM_021828, intron 8 of 11) -170489 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 201-178 chr4 72377389 72377517 + 2 NA intron (NM_014243, intron 4 of 21) intron (NM_014243, intron 4 of 21) 191768 NM_014243 9508 Hs.590919 NM_014243 ENSG00000156140 ADAMTS3 ADAMTS-4|HKLLS3 ADAM metallopeptidase with thrombospondin type 1 motif 3 protein-coding 464-92 chr17 59604175 59604572 + 2 NA intron (NM_024612, intron 15 of 17) L2c|LINE|L2 -15316 NM_001288653 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 190-132 chr4 36276381 36276533 + 2 NA Intergenic HAL1|LINE|L1 -5159 NM_001136536 401124 Hs.363407 NM_001136536 ENSG00000197057 DTHD1 - death domain containing 1 protein-coding 322-144 chr13 64842590 64842768 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -766668 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 547-26 chr10 113181418 113181870 + 2 NA Intergenic MIR|SINE|MIR 52373 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 235-136 chr17 21916086 21916270 + 2 NA Intergenic (ATGGAATGGA)n|Simple_repeat|Simple_repeat 223655 NM_001194958 100134444 Hs.200629 NM_001194958 ENSG00000260458 KCNJ18 KIR2.6|TTPP2 potassium voltage-gated channel subfamily J member 18 protein-coding 406-314 chr9 93703314 93703659 + 2 NA Intergenic L1M4|LINE|L1 108645 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 363-98 chr12 22395645 22395834 + 2 NA Intergenic Intergenic -61025 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 485-48 chr11 78426688 78427022 + 2 NA intron (NR_120564, intron 2 of 3) intron (NR_120564, intron 2 of 3) 2981 NR_120564 101928865 Hs.407574 NR_120564 ENSG00000251323 LINC02728 - long intergenic non-protein coding RNA 2728 ncRNA 215-147 chr2 62107617 62107792 + 2 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) -88411 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 192-34 chr11 26661640 26661752 + 2 NA 3' UTR (NM_001313726, exon 28 of 28) 3' UTR (NM_001313726, exon 28 of 28) 60364 NM_178498 159963 Hs.148907 NM_178498 ENSG00000148942 SLC5A12 SMCT2 solute carrier family 5 member 12 protein-coding 373-272 chr3 196148243 196148497 + 2 NA intron (NR_034088, intron 2 of 2) MSTA|LTR|ERVL-MaLR 5734 NR_034088 401109 Hs.280133 NM_001001699 ENSG00000224652 LINC00885 - long intergenic non-protein coding RNA 885 ncRNA 437-297 chr9 117512801 117513150 + 2 NA Intergenic MIR|SINE|MIR -97918 NM_001365069 23245 Hs.601562 NM_014010 ENSG00000148219 ASTN2 bA67K19.1 astrotactin 2 protein-coding 535-78 chr14 81499206 81499576 + 2 NA 3' UTR (NM_001244984, exon 8 of 8) 3' UTR (NM_001244984, exon 8 of 8) 34462 NM_005065 6400 Hs.181300 NM_005065 ENSG00000071537 SEL1L Hrd3|PRO1063|SEL1-LIKE|SEL1L1 SEL1L adaptor subunit of ERAD E3 ubiquitin ligase protein-coding 562-226 chr9 18185996 18186335 + 2 NA Intergenic Intergenic -287988 NM_001040272 92949 Hs.741483 NM_052866 ENSG00000178031 ADAMTSL1 ADAMTSL-1|ADAMTSR1|C9orf94|PUNCTIN ADAMTS like 1 protein-coding 262-431 chr8 91414565 91414776 + 2 NA Intergenic Intergenic 165351 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 232-312 chr5 118625649 118625816 + 2 NA intron (NR_104998, intron 4 of 4) intron (NR_104998, intron 4 of 4) 29544 NR_104998 102467225 Hs.582523 NR_104998 ENSG00000249128 LINC02215 - long intergenic non-protein coding RNA 2215 ncRNA 324-420 chr5 32248157 32248440 + 2 NA intron (NM_001294344, intron 9 of 13) MIRb|SINE|MIR 64641 NM_001294343 54545 Hs.481836 NM_019061 ENSG00000150712 MTMR12 3-PAP|PIP3AP myotubularin related protein 12 protein-coding 261-391 chr8 127642083 127642247 + 2 NA Intergenic Intergenic 91802 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 372-307 chr22 47505787 47506133 + 2 NA Intergenic L1PB3|LINE|L1 -18849 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 303-53 chr10 84721129 84721409 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 296100 NM_001284242 54462 Hs.461988 NM_018999 ENSG00000107771 CCSER2 FAM190B|Gcap14|KIAA1128|bA486O22.1 coiled-coil serine rich protein 2 protein-coding 243-52 chr10 82145818 82145986 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 87018 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 264-18 chr1 182406548 182406767 + 2 NA promoter-TSS (NR_034131) promoter-TSS (NR_034131) -964 NR_034131 388719 Hs.508989 NM_001010899 ENSG00000203729 LINC00272 C1orf120|NCRNA00272 long intergenic non-protein coding RNA 272 ncRNA 350-453 chr6 142653273 142653499 + 2 NA Intergenic L1MA6|LINE|L1 -15497 NR_027312 153910 Hs.350819 NR_027311 ENSG00000236366 LOC153910 - uncharacterized LOC153910 ncRNA 263-15 chr1 110712208 110712388 + 2 NA Intergenic Intergenic -37358 NM_002232 3738 Hs.169948 NM_002232 ENSG00000177272 KCNA3 HGK5|HLK3|HPCN3|HUKIII|KV1.3|MK3|PCN3 potassium voltage-gated channel subfamily A member 3 protein-coding 262-438 chr8 122305518 122305778 + 2 NA Intergenic Intergenic 262996 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 718-89 chr8 32358434 32358900 + 2 NA intron (NM_013962, intron 1 of 4) intron (NM_013962, intron 1 of 4) -82079 NR_047475 100874286 Hs.147060 NR_047475 ENSG00000254049 NRG1-IT3 - NRG1 intronic transcript 3 ncRNA 293-284 chr3 174835144 174835403 + 2 NA Intergenic L1MB2|LINE|L1 -24061 NM_207015 254827 Hs.565848 NM_207015 ENSG00000177694 NAALADL2 - N-acetylated alpha-linked acidic dipeptidase like 2 protein-coding 547-100 chr2 80320239 80320637 + 2 NA intron (NM_001282599, intron 1 of 11) intron (NM_001282599, intron 1 of 11) 7059 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 345-358 chr3 109877646 109877915 + 2 NA Intergenic L1PA16|LINE|L1 274952 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 825-9 chr14 48919649 48920304 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 666404 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 180-121 chr4 171218257 171218401 + 2 NA Intergenic Intergenic 32145 NR_106730 102466953 NR_106730 ENSG00000278502 MIR6082 hsa-mir-6082 microRNA 6082 ncRNA 443-296 chr8 128325240 128325520 + 2 NA Intergenic MIRb|SINE|MIR 175264 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 336-367 chr3 64876713 64877029 + 2 NA intron (NR_038264, intron 4 of 5) MER3|DNA|hAT-Charlie -188871 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 239-396 chr8 41444024 41444210 + 2 NA Intergenic MIR3|SINE|MIR 17462 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 305-433 chr5 45898806 45898998 + 2 NA Intergenic L1ME1|LINE|L1 -202522 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 350-45 chr10 53151840 53152175 + 2 NA Intergenic Intergenic -380307 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 322-451 chr6 38919895 38920119 + 2 NA intron (NM_001371, intron 69 of 91) intron (NM_001371, intron 69 of 91) 33100 NR_038401 100131047 Hs.670957 NR_038401 LOC100131047 - uncharacterized LOC100131047 ncRNA 332-292 chr20 31383289 31383528 + 2 NA intron (NR_073153, intron 1 of 2) AluSz|SINE|Alu 7182 NM_001271209 245932 Hs.516998 NM_153289 ENSG00000180483 DEFB119 DEFB-19|DEFB-20|DEFB120|DEFB20|ESC42-RELA|ESC42-RELB defensin beta 119 protein-coding 327-158 chr14 87093665 87093866 + 2 NA Intergenic Intergenic 187987 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 386-36 chr10 50917750 50918086 + 2 NA Intergenic Intergenic -32243 NM_138933 29974 Hs.282795 NM_014576 ENSG00000148584 A1CF ACF|ACF64|ACF65|APOBEC1CF|ASP APOBEC1 complementation factor protein-coding 305-26 chr1 113275017 113275215 + 2 NA Intergenic L2c|LINE|L2 -68863 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 311-47 chr10 27857104 27857411 + 2 NA intron (NM_001290021, intron 12 of 13) Tigger2a|DNA|TcMar-Tigger -111438 NM_173576 283078 Hs.128193 NM_173576 ENSG00000150051 MKX C10orf48|IFRX|IRXL1 mohawk homeobox protein-coding 494-244 chr6 40069063 40069520 + 2 NA Intergenic Charlie7|DNA|hAT-Charlie -134829 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 289-457 chr8 23697984 23698220 + 2 NA Intergenic L1ME3B|LINE|L1 8496 NM_001136271 137814 Hs.532654 NM_001136271 ENSG00000180053 NKX2-6 CSX2|CTHM|NKX2F|NKX4-2 NK2 homeobox 6 protein-coding 388-234 chr3 139224256 139224587 + 2 NA Intergenic Intergenic 9101 NR_027070 140464 Hs.721270 NR_027070 PISRT1 NCRNA00195 PISRT1 lncRNA ncRNA 303 chr1 40517312 40517604 + 2 NA Intergenic AluJr4|SINE|Alu 8739 NM_001346952 64789 Hs.59584 NM_022774 ENSG00000164002 EXO5 C1orf176|DEM1|Exo V|hExo5 exonuclease 5 protein-coding 157-63 chr2 99777970 99778072 + 2 NA intron (NM_001025108, intron 7 of 23) intron (NM_001025108, intron 7 of 23) -288004 NR_135649 51455 Hs.443077 NM_016316 ENSG00000135945 REV1 AIBP80|REV1L REV1 DNA directed polymerase protein-coding 245-291 chr5 117811791 117811959 + 2 NA intron (NR_104997, intron 1 of 2) intron (NR_104997, intron 1 of 2) 81514 NR_104997 102467224 Hs.134230 NR_104997 LINC02147 - long intergenic non-protein coding RNA 2147 ncRNA 419-120 chr18 12559062 12559379 + 2 NA intron (NM_020148, intron 2 of 15) LTR12C|LTR|ERV1 97512 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 352-327 chr3 106935789 106936051 + 2 NA Intergenic Intergenic 304718 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 778-47 chr3 29666453 29667030 + 2 NA intron (NM_001003792, intron 4 of 13) intron (NM_001003792, intron 4 of 13) 267415 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 350-71 chr11 39274553 39274781 + 2 NA Intergenic Intergenic 625809 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 153-102 chr9 75548101 75548230 + 2 NA Intergenic Intergenic -342479 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 209-263 chr5 148518852 148519000 + 2 NA intron (NM_001040172, intron 4 of 5) L2a|LINE|L2 118135 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 216-335 chr8 84566609 84566794 + 2 NA intron (NM_001354308, intron 3 of 9) intron (NM_001354308, intron 3 of 9) -139226 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 250-297 chr3 186938144 186938327 + 2 NA intron (NM_173216, intron 1 of 7) intron (NM_173216, intron 1 of 7) 7709 NM_173217 6480 Hs.207459 NM_003032 ENSG00000073849 ST6GAL1 SIAT1|ST6GalI|ST6N ST6 beta-galactoside alpha-2,6-sialyltransferase 1 protein-coding 452-3 chr1 67616669 67616976 + 2 NA Intergenic Intergenic -68379 NM_001924 1647 Hs.80409 NM_001924 ENSG00000116717 GADD45A DDIT1|GADD45 growth arrest and DNA damage inducible alpha protein-coding 186-173 chr9 79485087 79485252 + 2 NA Intergenic Intergenic -86604 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 345-295 chr2 175799094 175799404 + 2 NA Intergenic Intergenic 203018 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 412-29 chr10 52016670 52017012 + 2 NA intron (NM_001098512, intron 5 of 17) L2a|LINE|L2 297287 NR_038277 100506939 Hs.584791 NR_038277 PRKG1-AS1 - PRKG1 antisense RNA 1 ncRNA 802-56 chr5 110187476 110187932 + 2 NA Intergenic L1PA7|LINE|L1 304522 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 356-489 chr8 126661502 126661751 + 2 NA Intergenic LTR37A|LTR|ERV1 -103148 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 245-197 chr2 106983871 106984043 + 2 NA Intergenic L1MC3|LINE|L1 -96848 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 352-21 chr1 159946611 159946927 + 2 NA Intergenic Intergenic -1156 NM_001135050 57549 Hs.591472 NM_020789 ENSG00000085552 IGSF9 FP18798|IGSF9A|Nrt1 immunoglobulin superfamily member 9 protein-coding 382-439 chr9 117018527 117018868 + 2 NA intron (NM_014010, intron 5 of 21) MIRb|SINE|MIR 162504 NR_003708 100124538 Hs.693445 NR_003708 ENSG00000207268 SNORA70C U70C small nucleolar RNA, H/ACA box 70C snoRNA 391-239 chr3 130865794 130866108 + 2 NA intron (NM_001199181, intron 1 of 26) intron (NM_001199181, intron 1 of 26) 15356 NM_001199181 27032 Hs.584884 NM_014382 ENSG00000017260 ATP2C1 ATP2C1A|BCPM|HHD|PMR1|SPCA1|hSPCA1 ATPase secretory pathway Ca2+ transporting 1 protein-coding 316-503 chr7 11427775 11427992 + 2 NA intron (NM_015204, intron 14 of 26) intron (NM_015204, intron 14 of 26) 404315 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 456-302 chr7 72481990 72482355 + 2 NA Intergenic L1MEc|LINE|L1 -35029 NM_001363460 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 395-232 chr3 120117312 120117590 + 2 NA Intergenic MIR3|SINE|MIR -23004 NM_001354596 2932 Hs.445733 NM_002093 ENSG00000082701 GSK3B - glycogen synthase kinase 3 beta protein-coding 373-349 chr5 181108530 181108778 + 2 NA Intergenic Intergenic 16650 NM_001258283 26693 Hs.742585 NM_001258283 ENSG00000185372 OR2V1 OR2V1P|OST265 olfactory receptor family 2 subfamily V member 1 protein-coding 338-8 chr1 59303624 59303799 + 2 NA intron (NM_018291, intron 1 of 15) L1MA9|LINE|L1 -6321 NM_001244714 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 246-108 chr13 110086454 110086688 + 2 NA Intergenic L1MA4|LINE|L1 33286 NR_126387 104355146 Hs.508690 NR_126387 ENSG00000231428 LINC00396 - long intergenic non-protein coding RNA 396 ncRNA 399-56 chr11 56054021 56054306 + 2 NA Intergenic Intergenic 23744 NM_001001921 219447 Hs.553625 NM_001001921 ENSG00000181785 OR5AS1 OR11-168 olfactory receptor family 5 subfamily AS member 1 protein-coding 294-182 chr18 78142893 78143133 + 2 NA Intergenic Intergenic -149286 NR_104127 101927715 Hs.385670 NR_104127 LINC01029 - long intergenic non-protein coding RNA 1029 ncRNA 402-94 chr15 53532985 53533307 + 2 NA intron (NM_182758, intron 18 of 19) intron (NM_182758, intron 18 of 19) 7706 NR_102336 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 160-14 chr11 82375085 82375218 + 2 NA intron (NR_120571, intron 1 of 7) intron (NR_120571, intron 1 of 7) 28762 NR_120571 101928989 Hs.145117 NR_120571 ENSG00000245832 MIR4300HG - MIR4300 host gene ncRNA 957-10 chr16 64674968 64675584 + 2 NA Intergenic L2|LINE|L2 446787 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 256-174 chr18 40609787 40609985 + 2 NA Intergenic LTR35B|LTR|ERV1 543600 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 394-111 chr14 87344898 87345220 + 2 NA Intergenic Intergenic 310235 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 211-61 chr12 45021019 45021182 + 2 NA intron (NM_001004329, intron 3 of 3) intron (NM_001004329, intron 3 of 3) 29999 NM_001004329 440097 Hs.302764 NM_001004329 ENSG00000185610 DBX2 - developing brain homeobox 2 protein-coding 230-364 chr8 13103336 13103473 + 2 NA intron (NM_001348084, intron 2 of 12).2 intron (NM_001348084, intron 2 of 12).2 12840 NM_001164271 10395 Hs.134296 NM_006094 ENSG00000164741 DLC1 ARHGAP7|HP|STARD12|p122-RhoGAP DLC1 Rho GTPase activating protein protein-coding 335-233 chr2 17938947 17939118 + 2 NA Intergenic MIRb|SINE|MIR 60365 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 296-315 chr3 167675340 167675491 + 2 NA Intergenic L1MC4|LINE|L1 -17492 NM_001348951 151790 Hs.213762 NM_178824 ENSG00000174776 WDR49 - WD repeat domain 49 protein-coding 267-238 chr21 21673571 21673766 + 2 NA Intergenic Intergenic 63651 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 493-160 chr2 122117501 122117862 + 2 NA Intergenic L1MA4A|LINE|L1 362030 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 553-20 chr10 75082902 75083280 + 2 NA Intergenic Intergenic 16395 NM_001363514 51207 Hs.178170 NM_016364 ENSG00000079393 DUSP13 BEDP|DUSP13A|DUSP13B|MDSP|SKRP4|TMDP dual specificity phosphatase 13 protein-coding 164-28 chr12 41819598 41819753 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 55486 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 197-209 chr8 118258580 118258759 + 2 NA intron (NM_001101676, intron 4 of 4) intron (NM_001101676, intron 4 of 4) -146850 NM_000127 2131 Hs.492618 NM_000127 ENSG00000182197 EXT1 EXT|LGCR|LGS|TRPS2|TTV exostosin glycosyltransferase 1 protein-coding 375-179 chr18 11426390 11426755 + 2 NA Intergenic L1ME1|LINE|L1 -27906 NR_146901 105371994 Hs.640568 NR_146901 ENSG00000267425 LINC01928 - long intergenic non-protein coding RNA 1928 ncRNA 287-40 chr10 4463594 4463769 + 2 NA Intergenic L1PA16|LINE|L1 57212 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 329-155 chr14 45661064 45661317 + 2 NA Intergenic L1PA14|LINE|L1 54412 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 470-187 chr4 13187328 13187741 + 2 NA Intergenic L1MC5a|LINE|L1 296806 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 151-52 chr3 124119 124204 + 2 NA Intergenic Intergenic -72435 NM_001253387 10752 Hs.148909 NM_006614 ENSG00000134121 CHL1 CALL|L1CAM2 cell adhesion molecule L1 like protein-coding 292-330 chr4 169192606 169192895 + 2 NA intron (NM_020870, intron 2 of 11) L1PB1|LINE|L1 78206 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 382-207 chr2 114590094 114590402 + 2 NA intron (NM_001321908, intron 2 of 25) MER63C|DNA|hAT-Blackjack 128671 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 547-136 chr3 81108384 81108836 + 2 NA Intergenic LTR68|LTR|ERV1 114742 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 297-167 chr16 81280590 81280760 + 2 NA intron (NM_017429, intron 7 of 10) MIRc|SINE|MIR -34291 NM_022041 8139 Hs.112569 NM_022041 ENSG00000261609 GAN GAN1|KLHL16 gigaxonin protein-coding 433-259 chr7 7473714 7474074 + 2 NA intron (NM_001037763, intron 15 of 34) (TA)n|Simple_repeat|Simple_repeat 61979 NM_001037763 340267 Hs.491104 NM_001037763 ENSG00000215018 COL28A1 COL28 collagen type XXVIII alpha 1 chain protein-coding 175-63 chr17 71848415 71848535 + 2 NA Intergenic Intergenic 177504 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 548-53 chr12 40331024 40331539 + 2 NA intron (NM_198578, intron 39 of 50) HAL1ME|LINE|L1 -62113 NM_173600 283463 Hs.632712 NM_173600 MUC19 MUC-19 mucin 19, oligomeric protein-coding 405-33 chr10 76242624 76242917 + 2 NA intron (NM_001305581, intron 5 of 6) MLT1C|LTR|ERVL-MaLR 460009 NM_032024 83938 Hs.118161 NM_032024 ENSG00000148655 LRMDA C10orf11|CDA017 leucine rich melanocyte differentiation associated protein-coding 239-220 chr21 25265462 25265695 + 2 NA Intergenic Intergenic 166123 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 421-45 chr11 101460660 101461027 + 2 NA intron (NM_004621, intron 10 of 12) intron (NM_004621, intron 10 of 12) 59062 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 241-416 chr8 141043106 141043286 + 2 NA Intergenic AluSg|SINE|Alu -41117 NM_001352699 5747 Hs.395482 NM_005607 ENSG00000169398 PTK2 FADK|FAK|FAK1|FRNK|PPP1R71|p125FAK|pp125FAK protein tyrosine kinase 2 protein-coding 414-11 chr1 81263583 81263832 + 2 NA Intergenic Intergenic -42485 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 347-160 chr16 6502556 6502769 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -271147 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 316-488 chr6 77365145 77365328 + 2 NA Intergenic Intergenic 98786 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 171 chr1 14860559 14860712 + 2 NA intron (NM_201628, intron 1 of 14) L1M5|LINE|L1 -63494 NM_001018000 23254 Hs.368823 NM_015209 ENSG00000189337 KAZN KAZ kazrin, periplakin interacting protein protein-coding 389-16 chr1 117306986 117307328 + 2 NA intron (NR_126408, intron 2 of 2) intron (NR_126408, intron 2 of 2) 11691 NR_126408 104355292 Hs.576446 NR_126408 ENSG00000235202 LINC01525 lnc-MAN1A2-1 long intergenic non-protein coding RNA 1525 ncRNA 678-96 chr7 23764436 23764949 + 2 NA intron (NM_031414, intron 11 of 23) L1M5|LINE|L1 54473 NM_001260504 56164 Hs.309767 NM_031414 ENSG00000196335 STK31 SGK396|TDRD8 serine/threonine kinase 31 protein-coding 493-148 chr2 77745508 77745793 + 2 NA intron (NR_110288, intron 3 of 3) (TA)n|Simple_repeat|Simple_repeat -170284 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 268-178 chr2 16494606 16494810 + 2 NA Intergenic L2a|LINE|L2 171126 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 483-85 chr16 78016315 78016651 + 2 NA Intergenic Intergenic -6065 NM_005752 10143 Hs.177936 NM_005752 ENSG00000166509 CLEC3A CLECSF1 C-type lectin domain family 3 member A protein-coding 175-84 chr2 166894905 166895073 + 2 NA intron (NM_152381, intron 1 of 10) L2c|LINE|L2 6502 NM_001199143 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 284-223 chr2 219931219 219931437 + 2 NA Intergenic L1M1|LINE|L1 -24763 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 339-108 chr11 98243295 98243589 + 2 NA Intergenic Intergenic -777507 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 490-20 chr1 147718522 147718872 + 2 NA Intergenic HERVL18-int|LTR|ERVL 41905 NM_181703 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 255-347 chr5 180581454 180581646 + 2 NA Intergenic Intergenic 9949 NM_052863 92304 Hs.62492 NM_052863 ENSG00000161055 SCGB3A1 HIN-1|HIN1|LU105|PnSP-2|UGRP2 secretoglobin family 3A member 1 protein-coding 556-108 chr2 132445745 132446145 + 2 NA intron (NM_001508, intron 1 of 1) intron (NM_001508, intron 1 of 1) 12234 NR_162099 113218485 NR_162099 MIR9986 - microRNA 9986 ncRNA 603-60 chr17 33411390 33411812 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) -118613 NM_183377 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 319-533 chr8 87643891 87644163 + 2 NA Intergenic L1ME3A|LINE|L1 229988 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 256-125 chr14 66655445 66655656 + 2 NA intron (NM_001024218, intron 1 of 21) L1MD1|LINE|L1 148143 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 220-285 chr5 52173110 52173303 + 2 NA Intergenic L1MA7|LINE|L1 165175 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 466-152 chr2 204005803 204006211 + 2 NA Intergenic Intergenic 69259 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 201-249 chr8 131559392 131559580 + 2 NA Intergenic L1MA3|LINE|L1 -344607 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 226-313 chr6 153268061 153268248 + 2 NA Intergenic Intergenic -136872 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 510-152 chr2 119941641 119942118 + 2 NA intron (NM_002830, intron 15 of 26) Charlie8|DNA|hAT-Charlie -71198 NM_001184938 57669 Hs.369232 NM_020909 ENSG00000115109 EPB41L5 BE37|YMO1|YRT erythrocyte membrane protein band 4.1 like 5 protein-coding 306-310 chr3 63465505 63465793 + 2 NA intron (NR_046677, intron 1 of 4) L1MC5|LINE|L1 22337 NM_144642 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 517-187 chr4 32195083 32195411 + 2 NA Intergenic Intergenic -155791 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 233-220 chr3 1290055 1290282 + 2 NA intron (NM_001349357, intron 5 of 20) MER5A|DNA|hAT-Charlie 197144 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 313-199 chr17 34856287 34856443 + 2 NA Intergenic L1ME4a|LINE|L1 105095 NM_001193529 10693 Hs.73072 NM_006584 ENSG00000132141 CCT6B CCT-zeta-2|CCTZ-2|Cctz2|TCP-1-zeta-2|TSA303 chaperonin containing TCP1 subunit 6B protein-coding 195-141 chr3 24784326 24784485 + 2 NA Intergenic MamTip3|DNA|hAT-Tip100 -44918 NM_001290216 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 329-456 chr5 44935046 44935309 + 2 NA Intergenic L1MA6|LINE|L1 126230 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 195-160 chr4 30641693 30641802 + 2 NA Intergenic MER70B|LTR|ERVL -78622 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 239-446 chrX 76698807 76699010 + 2 NA intron (NR_110400, intron 1 of 3) L1MA1|LINE|L1 220452 NR_029909 494333 NR_029909 ENSG00000283242 MIR384 MIRN384|hsa-mir-384 microRNA 384 ncRNA 295-462 chr8 34248961 34249240 + 2 NA Intergenic Intergenic -534821 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 365-92 chr12 19800233 19800478 + 2 NA Intergenic Intergenic -214330 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 285-276 chr3 94209615 94209785 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 146639 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 384-348 chr7 67468712 67468990 + 2 NA Intergenic MIR|SINE|MIR 132875 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 316-476 chr6 37691254 37691547 + 2 NA intron (NM_153487, intron 1 of 16) MIRc|SINE|MIR 6483 NM_153487 266727 Hs.437993 NM_153487 ENSG00000112139 MDGA1 GPIM|MAMDC3 MAM domain containing glycosylphosphatidylinositol anchor 1 protein-coding 537-283 chrX 94218972 94219333 + 2 NA Intergenic L2a|LINE|L2 544946 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 314-285 chr2 75128346 75128551 + 2 NA intron (NM_015727, intron 1 of 3) intron (NM_015727, intron 1 of 3) 37636 NR_049796 100846995 NR_049796 ENSG00000263909 MIR5000 - microRNA 5000 ncRNA 333-596 chr9 8319731 8319988 + 2 NA exon (NM_001040712, exon 29 of 30) exon (NM_001040712, exon 29 of 30) 414087 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 712-10 chr1 213473943 213474488 + 2 NA Intergenic Intergenic 422974 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 382-170 chr2 6672677 6672894 + 2 NA Intergenic Intergenic -22266 NR_110497 102800314 Hs.258100 NR_110497 ENSG00000236172 MIR7515HG - MIR7515 host gene ncRNA 461-157 chr20 41984436 41984827 + 2 NA Intergenic Intergenic -366254 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 173-5 chr1 113488075 113488187 + 2 NA intron (NM_001142782, intron 1 of 20) intron (NM_001142782, intron 1 of 20) 97616 NM_152900 260425 Hs.486189 NM_020965 ENSG00000081026 MAGI3 MAGI-3|dJ730K3.2 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 233-316 chr5 154427146 154427321 + 2 NA intron (NR_037897, intron 2 of 2) L1PA16|LINE|L1 18589 NR_037897 386627 Hs.652021 NR_037897 SAP30L-AS1 GALNT10-AS1 SAP30L antisense RNA 1 (head to head) ncRNA 396-267 chr5 4992208 4992563 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -41974 NR_026994 340094 Hs.665092 NR_026994 ENSG00000215231 LINC01020 - long intergenic non-protein coding RNA 1020 ncRNA 145-66 chr5 29787712 29787821 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -92794 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 317-475 chr8 53764005 53764261 + 2 NA intron (NM_213620, intron 11 of 13) L1MCa|LINE|L1 78909 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 260-399 chr7 15232609 15232742 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -257817 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 264-351 chr6 37963567 37963761 + 2 NA intron (NM_021943, intron 2 of 5) intron (NM_021943, intron 2 of 5) 143937 NM_021943 60685 Hs.36959 NM_021943 ENSG00000156639 ZFAND3 TEX27 zinc finger AN1-type containing 3 protein-coding 318-210 chr17 71123622 71123854 + 2 NA intron (NR_104152, intron 3 of 3) MIR|SINE|MIR 78441 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 282-214 chr2 86794748 86794966 + 2 NA intron (NM_001145873, intron 3 of 8) L2c|LINE|L2 -3143 NM_001768 925 Hs.85258 NM_001768 ENSG00000153563 CD8A CD8|Leu2|p32 CD8a molecule protein-coding 321-128 chr12 34675739 34675990 + 2 NA Intergenic ALR/Alpha|Satellite|centr 653368 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 184-93 chr2 81204091 81204188 + 2 NA Intergenic Intergenic 262807 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 281-332 chr4 143076428 143076658 + 2 NA Intergenic Intergenic 108318 NR_136203 105377623 NR_136203 ENSG00000250326 LOC105377623 - uncharacterized LOC105377623 ncRNA 590-86 chr2 201925535 201926056 + 2 NA Intergenic AluSz|SINE|Alu -108792 NM_003507 8324 Hs.173859 NM_003507 ENSG00000155760 FZD7 FzE3 frizzled class receptor 7 protein-coding 356-333 chr3 127881781 127882066 + 2 NA Intergenic Intergenic -33309 NM_001370224 166348 Hs.132087 NM_207335 ENSG00000187715 KBTBD12 KLHDC6 kelch repeat and BTB domain containing 12 protein-coding 391-206 chr20 40493603 40493942 + 2 NA Intergenic Intergenic 195464 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 829-47 chr8 135400221 135400746 + 2 NA Intergenic L1MB7|LINE|L1 -56973 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 204-83 chr14 36957832 36957989 + 2 NA intron (NM_001171170, intron 1 of 10) intron (NM_001171170, intron 1 of 10) -5519 NR_039725 100616280 NR_039725 ENSG00000266327 MIR4503 - microRNA 4503 ncRNA 338-579 chr9 24261444 24261661 + 2 NA Intergenic Intergenic 284124 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 568-128 chr3 8789293 8789703 + 2 NA Intergenic L1MB7|LINE|L1 -19884 NM_001354653 5021 Hs.2820 NM_000916 ENSG00000180914 OXTR OT-R oxytocin receptor protein-coding 285-366 chr6 63762121 63762350 + 2 NA intron (NM_001292009, intron 41 of 43) intron (NM_001292009, intron 41 of 43) -44601 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 238-110 chr14 96664786 96664982 + 2 NA Intergenic Intergenic -76307 NR_146552 105370646 NR_146552 ENSG00000258979 LINC02299 - long intergenic non-protein coding RNA 2299 ncRNA 510-119 chr19 23244750 23245210 + 2 NA intron (NM_001355405, intron 1 of 3) MER21C|LTR|ERVL 5414 NM_001355404 440519 Hs.675814 NM_001355404 ENSG00000196081 ZNF724 ZNF724P zinc finger protein 724 protein-coding 133-52 chr3 145046046 145046170 + 2 NA Intergenic Intergenic 1023077 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 204-211 chr4 8378820 8378998 + 2 NA intron (NM_003501, intron 14 of 17) intron (NM_003501, intron 14 of 17) 58733 NR_149125 105374374 Hs.145224 NR_149125 ENSG00000249145 LINC02517 - long intergenic non-protein coding RNA 2517 ncRNA 211-246 chr5 156604824 156604965 + 2 NA intron (NM_001128209, intron 5 of 7) intron (NM_001128209, intron 5 of 7) -245401 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 252-153 chr17 54811043 54811263 + 2 NA Intergenic L1ME4c|LINE|L1 -89538 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 432-221 chr5 75865269 75865605 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -148000 NM_001099271 134359 Hs.432726 NM_152408 ENSG00000152359 POC5 C5orf37 POC5 centriolar protein protein-coding 236-25 chr1 193724478 193724645 + 2 NA Intergenic Intergenic 419816 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 372-386 chr5 13188964 13189303 + 2 NA Intergenic AluJr|SINE|Alu -156247 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 263-78 chr12 9148082 9148270 + 2 NA TTS (NM_002864) TTS (NM_002864) -31947 NM_001347424 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 258-402 chr8 107340395 107340575 + 2 NA intron (NM_001199859, intron 2 of 8) intron (NM_001199859, intron 2 of 8) -3970 NM_001314051 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 321-452 chr5 16124464 16124760 + 2 NA intron (NM_001102562, intron 2 of 3) intron (NM_001102562, intron 2 of 3) 55179 NM_001102562 441061 Hs.662216 NM_001102562 ENSG00000183654 MARCH11 MARCH-XI|RNF226 membrane associated ring-CH-type finger 11 protein-coding 179-84 chr4 65746260 65746399 + 2 NA Intergenic Intergenic -75834 NM_001281765 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 538-69 chr14 59359181 59359678 + 2 NA exon (NM_014992, exon 21 of 25) exon (NM_014992, exon 21 of 25) 95988 NM_014992 23002 Hs.19156 NM_014992 ENSG00000100592 DAAM1 - dishevelled associated activator of morphogenesis 1 protein-coding 433-247 chr6 88736290 88736647 + 2 NA intron (NM_001286428, intron 11 of 13) intron (NM_001286428, intron 11 of 13) -197099 NR_110867 101928936 Hs.533080 NR_110867 LOC101928936 - uncharacterized LOC101928936 ncRNA 417-255 chr7 8610156 8610537 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 176737 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 220-18 chr1 156796975 156797182 + 2 NA intron (NM_005973, intron 5 of 6) intron (NM_005973, intron 5 of 6) -18672 NM_001007792 4914 Hs.406293 NM_002529 ENSG00000198400 NTRK1 MTC|TRK|TRK1|TRKA|Trk-A|p140-TrkA neurotrophic receptor tyrosine kinase 1 protein-coding 404-71 chr12 13606046 13606401 + 2 NA intron (NM_000834, intron 9 of 12) MSTB1|LTR|ERVL-MaLR -229478 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 292-213 chr2 56693315 56693461 + 2 NA Intergenic Intergenic -507618 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 516-271 chr9 104630854 104631191 + 2 NA Intergenic Intergenic -12818 NM_001001956 286362 Hs.553682 NM_001001956 ENSG00000136839 OR13C9 OR37L|OR9-13 olfactory receptor family 13 subfamily C member 9 protein-coding 599-11 chr1 232822189 232822621 + 2 NA Intergenic Intergenic 17513 NM_019090 54627 Hs.160373 NM_019090 ENSG00000212916 MAP10 KIAA1383|MTR120 microtubule associated protein 10 protein-coding 342-66 chr10 63980294 63980599 + 2 NA Intergenic Intergenic -458556 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 264-202 chr2 71886251 71886476 + 2 NA Intergenic Intergenic 261499 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 250-10 chr1 85559428 85559675 + 2 NA intron (NM_001134445, intron 1 of 6) L1MEf|LINE|L1 18649 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 280-168 chr18 4385072 4385303 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 70079 NM_001242761 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 200-111 chr18 69759735 69759897 + 2 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 188057 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 556-185 chr6 13358448 13358814 + 2 NA 3' UTR (NM_018988, exon 2 of 2) 3' UTR (NM_018988, exon 2 of 2) -30048 NM_001318805 51256 Hs.484678 NM_016495 ENSG00000145979 TBC1D7 MGCPH|PIG51|TBC7 TBC1 domain family member 7 protein-coding 318-332 chr21 28562060 28562338 + 2 NA Intergenic L1PA16|LINE|L1 22881 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 352-428 chr5 115046563 115046858 + 2 NA Intergenic Intergenic 123198 NM_001300759 55521 Hs.519514 NM_018700 ENSG00000152503 TRIM36 ANPH|HAPRIN|RBCC728|RNF98 tripartite motif containing 36 protein-coding 398-77 chr12 46156566 46156903 + 2 NA Intergenic L1MEh|LINE|L1 109782 NM_001278389 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 317-353 chr4 61379794 61379966 + 2 NA intron (NM_001371342, intron 1 of 20) intron (NM_001371342, intron 1 of 20) 177708 NM_001371342 387-252 chr4 67359797 67360110 + 2 NA Intergenic L1M4b|LINE|L1 62047 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 120-8 chr10 47115259 47115350 + 2 NA Intergenic Intergenic -184893 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 362-477 chrX 90888628 90888861 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -546095 NM_080832 140886 Hs.246590 NM_080832 ENSG00000174740 PABPC5 PABP5 poly(A) binding protein cytoplasmic 5 protein-coding 257-122 chr15 46598580 46598736 + 2 NA Intergenic MER6|DNA|TcMar-Tigger -585431 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 686-51 chr20 44059725 44060208 + 2 NA intron (NM_001098798, intron 5 of 7) L1PB1|LINE|L1 114070 NM_001098798 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 415-154 chr20 7140953 7141288 + 2 NA Intergenic Intergenic 113082 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 578-132 chr4 124353262 124353729 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie 204939 NR_110838 101927087 Hs.518966 NR_110838 ENSG00000261083 LINC02516 - long intergenic non-protein coding RNA 2516 ncRNA 155-83 chr5 141468888 141468965 + 2 NA intron (NM_003735, intron 1 of 3) intron (NM_003735, intron 1 of 3) -7040 NM_032403 5098 Hs.368160 NM_002588 ENSG00000240184 PCDHGC3 PC43|PCDH-GAMMA-C3|PCDH2 protocadherin gamma subfamily C, 3 protein-coding 303-405 chr6 145528389 145528575 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 158395 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 286-103 chr13 39416105 39416327 + 2 NA intron (NM_005780, intron 2 of 3) intron (NM_005780, intron 2 of 3) 186977 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 377-98 chr12 114297354 114297557 + 2 NA Intergenic Intergenic -55685 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 336-437 chr4 176574390 176574694 + 2 NA Intergenic MamRTE1|LINE|RTE-BovB 218380 NM_005429 7424 Hs.435215 NM_005429 ENSG00000150630 VEGFC Flt4-L|LMPH1D|LMPHM4|VRP vascular endothelial growth factor C protein-coding 298-99 chr12 88212737 88212893 + 2 NA Intergenic L1M2|LINE|L1 70508 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 262-376 chr6 75502207 75502378 + 2 NA Intergenic Intergenic -8492 NM_001300866 27145 Hs.201488 NM_015687 ENSG00000118407 FILIP1 FILIP filamin A interacting protein 1 protein-coding 344-38 chr1 228825335 228825525 + 2 NA Intergenic L1MDa|LINE|L1 89951 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 295-351 chr4 90268249 90268493 + 2 NA intron (NM_207491, intron 1 of 7) L1MA3|LINE|L1 33340 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 209-36 chr10 37928513 37928657 + 2 NA Intergenic L1MB7|LINE|L1 47395 NR_138069 219749 Hs.499429 NM_145011 ENSG00000175395 ZNF25 KOX19|Zfp9 zinc finger protein 25 protein-coding 129-55 chr3 78518592 78518662 + 2 NA Intergenic Intergenic -469664 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 153-40 chr17 12495181 12495308 + 2 NA Intergenic AluSx1|SINE|Alu -54724 NR_034144 284034 Hs.376614 NR_034144 ENSG00000179136 LINC00670 - long intergenic non-protein coding RNA 670 ncRNA 123-46 chr5 16309968 16310053 + 2 NA Intergenic Intergenic 129769 NR_149044 401176 Hs.369777 NR_149044 LOC401176 - uncharacterized LOC401176 ncRNA 262-10 chr1 74287487 74287654 + 2 NA intron (NM_015978, intron 5 of 24) L1MA9|LINE|L1 52183 NM_015978 51086 Hs.480085 NM_015978 ENSG00000116783 TNNI3K CARK|CCDD TNNI3 interacting kinase protein-coding 250-436 chr8 104603929 104604173 + 2 NA Intergenic Intergenic -15027 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 383-102 chr14 27123187 27123391 + 2 NA Intergenic Intergenic 214647 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 316-353 chr3 89599504 89599694 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 491978 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 282-275 chr22 25535590 25535833 + 2 NA Intergenic Intergenic -28964 NM_001362778 157 Hs.657494 NM_005160 ENSG00000100077 GRK3 ADRBK2|BARK2 G protein-coupled receptor kinase 3 protein-coding 274-313 chr5 93492411 93492593 + 2 NA intron (NR_021491, intron 4 of 5) L1MB5|LINE|L1 78841 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 249-376 chr7 21485405 21485542 + 2 NA intron (NM_003112, intron 5 of 5) HAL1ME|LINE|L1 14415 NR_031594 100302122 NR_031594 ENSG00000221783 MIR1183 MIRN1183|hsa-mir-1183 microRNA 1183 ncRNA 338-57 chr10 45603207 45603456 + 2 NA Intergenic Intergenic -8425 NM_145021 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 470-188 chr4 16922706 16923153 + 2 NA Intergenic L1MC5|LINE|L1 -24120 NM_001304435 9079 Hs.714330 NM_001290 ENSG00000169744 LDB2 CLIM1|LDB-2|LDB1 LIM domain binding 2 protein-coding 350-79 chr11 93036339 93036653 + 2 NA Intergenic Intergenic 66873 NM_005959 4544 Hs.569039 NM_005959 ENSG00000134640 MTNR1B FGQTL2|MEL-1B-R|MT2 melatonin receptor 1B protein-coding 550-212 chr7 38555104 38555519 + 2 NA intron (NM_001635, intron 1 of 20) AluJr|SINE|Alu 76062 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 213-77 chr13 51556628 51556796 + 2 NA Intergenic L2c|LINE|L2 4123 NR_039852 100616423 NR_039852 ENSG00000266611 MIR4703 - microRNA 4703 ncRNA 297-215 chr2 75992200 75992457 + 2 NA Intergenic L1M2|LINE|L1 -281413 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 527-257 chr8 34094149 34094530 + 2 NA Intergenic Intergenic -494233 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 295-110 chr13 22300107 22300378 + 2 NA Intergenic MER3|DNA|hAT-Charlie 89957 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 260-447 chr8 131827340 131827569 + 2 NA Intergenic Intergenic -76639 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 339-326 chr21 10687686 10687900 + 2 NA Intergenic (TTCCA)n|Simple_repeat|Simple_repeat 166279 NM_199261 7179 Hs.122986 NM_199259 ENSG00000274391 TPTE CT44|PTEN2 transmembrane phosphatase with tensin homology protein-coding 286-290 chr3 100958467 100958735 + 2 NA intron (NM_001349332, intron 1 of 35) L1MCc|LINE|L1 34889 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 257-423 chr8 125558484 125558667 + 2 NA Intergenic Intergenic 126366 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 229-78 chr11 114901734 114901903 + 2 NA Intergenic L1MA3|LINE|L1 223291 NM_182495 120406 Hs.446760 NM_182495 ENSG00000204361 NXPE2 FAM55B neurexophilin and PC-esterase domain family member 2 protein-coding 228-198 chr21 24578713 24578891 + 2 NA Intergenic Intergenic 150062 NR_135521 105372751 Hs.652040 NR_135519 ENSG00000237484 LINC01684 lnc-JAM2-6 long intergenic non-protein coding RNA 1684 ncRNA 403-246 chr5 45551807 45552093 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 144430 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 500-65 chr12 33846619 33846987 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -175693 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 524-290 chrX 81264265 81264753 + 2 NA intron (NM_003022, intron 1 of 3) intron (NM_003022, intron 1 of 3) 62407 NM_003022 6451 Hs.108029 NM_003022 ENSG00000131171 SH3BGRL HEL-S-115|SH3BGR SH3 domain binding glutamate rich protein like protein-coding 472-255 chr5 110675246 110675639 + 2 NA intron (NM_001039763, intron 1 of 13) intron (NM_001039763, intron 1 of 13) 51229 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 391-71 chr12 20045552 20045898 + 2 NA intron (NR_040098, intron 2 of 2) intron (NR_040098, intron 2 of 2) 31040 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 498-222 chr5 81943625 81944034 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -28194 NM_001131028 83734 Hs.713698 NM_031482 ENSG00000152348 ATG10 APG10|APG10L|pp12616 autophagy related 10 protein-coding 234-235 chr3 55328565 55328732 + 2 NA Intergenic Intergenic 150476 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 238-272 chr4 95955892 95956104 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 115905 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 325-358 chr3 114892395 114892582 + 2 NA intron (NM_001164343, intron 3 of 11) intron (NM_001164343, intron 3 of 11) 8137 NR_121662 26137 Hs.202577 NM_015642 ENSG00000181722 ZBTB20 DPZF|HOF|ODA-8S|PRIMS|ZNF288 zinc finger and BTB domain containing 20 protein-coding 304-74 chr11 24070461 24070631 + 2 NA Intergenic Intergenic -426507 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 364-354 chr5 109994267 109994513 + 2 NA Intergenic Intergenic 111208 NR_033175 100289673 Hs.368405 NR_033175 LINC01848 - long intergenic non-protein coding RNA 1848 ncRNA 328-140 chr14 38044655 38044873 + 2 NA Intergenic L2a|LINE|L2 -142640 NR_135286 400208 Hs.660501 NR_135286 ENSG00000259091 LINC00517 C14orf26 long intergenic non-protein coding RNA 517 ncRNA 526-20 chr10 37323759 37324110 + 2 NA intron (NR_104061, intron 3 of 4) HUERS-P3-int|LTR|ERV1 14748 NR_104061 101929520 Hs.144151 NR_104061 ENSG00000235687 LINC00993 - long intergenic non-protein coding RNA 993 ncRNA 209-20 chr1 204557254 204557399 + 2 NA 3' UTR (NM_001278519, exon 5 of 5) 3' UTR (NM_001278519, exon 5 of 5) 40920 NM_002393 4194 Hs.497492 NM_002393 ENSG00000198625 MDM4 HDMX|MDMX|MRP1 MDM4 regulator of p53 protein-coding 295-102 chr12 89200018 89200191 + 2 NA Intergenic Intergenic 152397 NM_022652 1848 Hs.298654 NM_001946 ENSG00000139318 DUSP6 HH19|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 139-73 chr5 110628824 110628936 + 2 NA intron (NM_001039763, intron 5 of 13) MIRb|SINE|MIR 97791 NM_001039763 642987 Hs.729154 NM_001039763 ENSG00000186952 TMEM232 - transmembrane protein 232 protein-coding 220-356 chr8 30223845 30224037 + 2 NA Intergenic Intergenic 67572 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 309-291 chr2 228330510 228330786 + 2 NA Intergenic Intergenic -148961 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 328-11 chr1 68711367 68711554 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -214378 NM_017779 55635 Hs.445098 NM_017779 ENSG00000024526 DEPDC1 DEP.8|DEPDC1-V2|DEPDC1A|SDP35 DEP domain containing 1 protein-coding 264-256 chr21 33880141 33880330 + 2 NA intron (NM_001331010, intron 33 of 38) intron (NM_001331010, intron 33 of 38) 35569 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 357-483 chr9 80864756 80864974 + 2 NA Intergenic (TTTC)n|Simple_repeat|Simple_repeat 824670 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 334-519 chr8 46464595 46464766 + 2 NA Intergenic ALR/Alpha|Satellite|centr 152963 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 720-70 chr5 85931968 85932501 + 2 NA Intergenic Intergenic -350210 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 534-221 chr6 115121126 115121478 + 2 NA Intergenic L1P1|LINE|L1 522533 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 729-21 chr13 65008388 65008870 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -857418 NR_132362 105370242 Hs.578051 NR_132362 LINC01052 - long intergenic non-protein coding RNA 1052 ncRNA 434-87 chr14 85718568 85718972 + 2 NA Intergenic L1M4a1|LINE|L1 185421 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 316-387 chr4 37099779 37100052 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR 98136 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 453-167 chr3 104452584 104452970 + 2 NA Intergenic L1MEf|LINE|L1 -913936 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 324-280 chr2 128958204 128958457 + 2 NA Intergenic Intergenic 93730 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 324-403 chr4 128247644 128247914 + 2 NA Intergenic MER4-int|LTR|ERV1 40034 NM_006320 10424 Hs.507910 NM_006320 ENSG00000164040 PGRMC2 DG6|PMBP progesterone receptor membrane component 2 protein-coding 431-162 chr20 44985124 44985481 + 2 NA intron (NM_001352385, intron 4 of 11) MIR|SINE|MIR 18790 NM_001352385 6789 Hs.472838 NM_006282 ENSG00000101109 STK4 KRS2|MST1|YSK3 serine/threonine kinase 4 protein-coding 175-103 chr3 128110702 128110798 + 2 NA intron (NM_003707, intron 3 of 10) intron (NM_003707, intron 3 of 10) 13062 NM_003707 8607 Hs.272822 NM_003707 ENSG00000175792 RUVBL1 ECP-54|ECP54|INO80H|NMP 238|NMP238|PONTIN|Pontin52|RVB1|TIH1|TIP49|TIP49A RuvB like AAA ATPase 1 protein-coding 376-272 chr4 38966106 38966350 + 2 NA TTS (NM_024943) TTS (NM_024943) 66181 NM_001303228 80008 Hs.374147 NM_024943 ENSG00000121895 TMEM156 - transmembrane protein 156 protein-coding 223-98 chr15 39914754 39914882 + 2 NA intron (NM_001271854, intron 1 of 3) intron (NM_001271854, intron 1 of 3) 6074 NM_007223 11245 Hs.37196 NM_007223 ENSG00000166073 GPR176 HB-954 G protein-coupled receptor 176 protein-coding 339-181 chr15 85626209 85626454 + 2 NA intron (NM_001270546, intron 1 of 28) L1MB3|LINE|L1 6381 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 331-544 chr8 135370703 135370961 + 2 NA Intergenic Intergenic -86624 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 521-176 chr4 35449808 35450185 + 2 NA Intergenic L1MC|LINE|L1 793943 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 551-119 chr3 82613261 82613652 + 2 NA Intergenic Intergenic 627314 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 354-310 chr3 180519054 180519274 + 2 NA Intergenic L1PA13|LINE|L1 -82999 NM_133462 151613 Hs.43213 NM_133462 ENSG00000163728 TTC14 DRDL5813|PRO19630 tetratricopeptide repeat domain 14 protein-coding 412-124 chr17 68812153 68812411 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 143110 NM_001288986 10351 Hs.58351 NM_007168 ENSG00000141338 ABCA8 - ATP binding cassette subfamily A member 8 protein-coding 227-35 chr10 52692320 52692507 + 2 NA intron (NR_155748, intron 1 of 2) L1M5|LINE|L1 62991 NR_155748 105378305 Hs.257871 NR_155748 LOC105378305 - uncharacterized LOC105378305 ncRNA 186-153 chr7 52951755 52951897 + 2 NA Intergenic L1MC2|LINE|L1 -83807 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 424-207 chr4 169261898 169262229 + 2 NA intron (NM_020870, intron 2 of 11) L1ME3A|LINE|L1 8893 NM_020870 57630 Hs.301804 NM_020870 ENSG00000154447 SH3RF1 POSH|RNF142|SH3MD2 SH3 domain containing ring finger 1 protein-coding 543-36 chr10 58992775 58993197 + 2 NA Intergenic Intergenic -6532 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 418-38 chr11 24683570 24683802 + 2 NA intron (NM_001252008, intron 1 of 11) intron (NM_001252008, intron 1 of 11) 186633 NM_001252010 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 226-338 chr8 66251586 66251728 + 2 NA Intergenic L1M6|LINE|L1 59543 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 401-201 chr3 38702295 38702551 + 2 NA intron (NM_006514, intron 25 of 26) intron (NM_006514, intron 25 of 26) -52736 NM_001160160 6331 Hs.517898 NM_000335 ENSG00000183873 SCN5A CDCD2|CMD1E|CMPD2|HB1|HB2|HBBD|HH1|ICCD|IVF|LQT3|Nav1.5|PFHB1|SSS1|VF1 sodium voltage-gated channel alpha subunit 5 protein-coding 447-248 chr7 52732443 52732714 + 2 NA Intergenic Intergenic -303055 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 238-209 chr20 53891936 53892104 + 2 NA Intergenic MIRb|SINE|MIR -16311 NR_002189 391257 Hs.449977 NR_002189 SUMO1P1 PIC1L|UBL2|UBL6 SUMO1 pseudogene 1 pseudo 519-113 chr2 126331842 126332200 + 2 NA Intergenic L1MB8|LINE|L1 -214036 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 422-64 chr12 74614910 74615239 + 2 NA Intergenic Intergenic 77239 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 419-30 chr10 44055579 44055902 + 2 NA Intergenic Intergenic 143338 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 291-277 chr3 2593430 2593657 + 2 NA intron (NM_175607, intron 4 of 24) intron (NM_175607, intron 4 of 24) -298672 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 339-260 chr2 67424529 67424798 + 2 NA Intergenic Intergenic 27330 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 433-189 chr4 13081424 13081791 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 402733 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 598-15 chr10 9101451 9101923 + 2 NA Intergenic Intergenic -173926 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 541-90 chr17 63283536 63283969 + 2 NA intron (NM_025185, intron 8 of 25) L1MEc|LINE|L1 156515 NM_001330421 1534 Hs.355264 NM_001915 ENSG00000008283 CYB561 CYB561A1|FRRS2|ORTHYP2 cytochrome b561 protein-coding 217-345 chr7 24438435 24438569 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -134950 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 544-30 chr10 56082088 56082436 + 2 NA Intergenic Intergenic 278997 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 289-385 chr5 116971499 116971705 + 2 NA Intergenic Intergenic -209393 NR_104678 102467223 Hs.570916 NR_104678 LINC02214 - long intergenic non-protein coding RNA 2214 ncRNA 336-297 chr2 170668592 170668815 + 2 NA Intergenic Intergenic 45864 NR_027433 440925 Hs.668461 NM_001013712 ENSG00000222033 LINC01124 - long intergenic non-protein coding RNA 1124 ncRNA 332-519 chr8 59209799 59210103 + 2 NA Intergenic L1PA16|LINE|L1 90741 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 355-302 chr22 32905279 32905521 + 2 NA intron (NM_003490, intron 4 of 13) intron (NM_003490, intron 4 of 13) 101421 NM_133633 8224 Hs.608750 NM_003490 ENSG00000185666 SYN3 - synapsin III protein-coding 276-179 chr16 50708875 50709069 + 2 NA intron (NR_163434, intron 3 of 12) intron (NR_163434, intron 3 of 12) 9592 NM_001293557 64127 Hs.592072 NM_022162 ENSG00000167207 NOD2 ACUG|BLAU|BLAUS|CARD15|CD|CLR16.3|IBD1|NLRC2|NOD2B|PSORAS1|YAOS nucleotide binding oligomerization domain containing 2 protein-coding 218-268 chr5 72430012 72430156 + 2 NA Intergenic Intergenic 77326 NM_152625 167465 Hs.224794 NM_152625 ENSG00000178175 ZNF366 DC-SCRIPT|DCSCRIPT zinc finger protein 366 protein-coding 501-108 chr2 80188222 80188586 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 116348 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 328-269 chr2 103864362 103864565 + 2 NA Intergenic Intergenic 543869 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 343-219 chr19 56579034 56579306 + 2 NA 3' UTR (NM_001001668, exon 6 of 6) 3' UTR (NM_001001668, exon 6 of 6) 11702 NM_001001668 388566 Hs.204449 NM_001001668 ENSG00000197016 ZNF470 CZF-1 zinc finger protein 470 protein-coding 260-233 chr2 231341448 231341634 + 2 NA intron (NM_001352757, intron 19 of 19) MLT1J|LTR|ERVL-MaLR -21167 NR_039937 100616317 NR_039937 ENSG00000263641 MIR4777 - microRNA 4777 ncRNA 236-289 chr5 64544683 64544838 + 2 NA intron (NM_001029875, intron 2 of 5) L2c|LINE|L2 -30890 NR_073511 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 746-82 chr8 90775959 90776486 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -15553 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 266-106 chr14 39788793 39788978 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -356385 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 573-198 chr8 108691455 108691971 + 2 NA intron (NR_136411, intron 1 of 3) intron (NR_136411, intron 1 of 3) 95881 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 541-258 chrX 155697594 155698001 + 2 NA intron (NM_001304990, intron 1 of 2) MIRc|SINE|MIR -69938 NM_005840 10251 Hs.381912 NM_005840 ENSG00000168939 SPRY3 spry-3 sprouty RTK signaling antagonist 3 protein-coding 238-244 chr3 99387209 99387364 + 2 NA Intergenic Intergenic -251308 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 318-415 chr4 149486357 149486536 + 2 NA intron (NM_001363507, intron 12 of 13) L1MA2|LINE|L1 329397 NM_001363507 285423 Hs.591689 NM_001363507 ENSG00000234828 IQCM - IQ motif containing M protein-coding 264-270 chr3 44405082 44405229 + 2 NA intron (NM_001282915, intron 10 of 10) intron (NM_001282915, intron 10 of 10) 17782 NM_001351479 102724231 Hs.131918 NM_001351479 C3orf86 LINC00694 chromosome 3 open reading frame 86 protein-coding 499-290 chrX 67814754 67815044 + 2 NA Intergenic L1M2|LINE|L1 270276 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 463-320 chrX 83044018 83044334 + 2 NA Intergenic L1MA3|LINE|L1 -464114 NM_000307 5456 Hs.2229 NM_000307 ENSG00000196767 POU3F4 BRAIN-4|BRN-4|BRN4|DFN3|DFNX2|OCT-9|OTF-9|OTF9 POU class 3 homeobox 4 protein-coding 217-295 chr5 62533014 62533178 + 2 NA intron (NM_016338, intron 22 of 29) intron (NM_016338, intron 22 of 29) -45639 NR_073584 101180901 Hs.482269 NR_073584 ENSG00000086200 IPO11-LRRC70 - IPO11-LRRC70 readthrough ncRNA 351-451 chr7 56723300 56723487 + 2 NA Intergenic MER21A|LTR|ERVL 89343 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 244-172 chr2 122601520 122601737 + 2 NA Intergenic Intergenic 471853 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 268-427 chr8 143851421 143851601 + 2 NA Intergenic AluJo|SINE|Alu -10538 NM_178564 340371 Hs.521926 NM_178564 ENSG00000185189 NRBP2 TRG16|pp9320 nuclear receptor binding protein 2 protein-coding 323-304 chr21 25097117 25097430 + 2 NA Intergenic Intergenic 256723 NR_046198 339622 Hs.616316 NR_046198 ENSG00000226983 LINC01692 - long intergenic non-protein coding RNA 1692 ncRNA 367-285 chr3 81942511 81942845 + 2 NA Intergenic L1MA9|LINE|L1 -43464 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 289-141 chr14 81741977 81742250 + 2 NA intron (NR_146498, intron 1 of 2) MIR|SINE|MIR 1025 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 238-7 chr1 55752121 55752352 + 2 NA Intergenic L1MEd|LINE|L1 192727 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 391-17 chr1 167398377 167398660 + 2 NA intron (NM_001198783, intron 11 of 15) intron (NM_001198783, intron 11 of 15) 69448 NM_001198783 5451 Hs.283402 NM_002697 ENSG00000143190 POU2F1 OCT1|OTF1|oct-1B POU class 2 homeobox 1 protein-coding 585-101 chr3 144138016 144138426 + 2 NA Intergenic MER11C|LTR|ERVK 165140 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 312-392 chr4 155171351 155171619 + 2 NA Intergenic Intergenic -37151 NM_001370180 4887 Hs.37125 NM_000910 ENSG00000185149 NPY2R NPY2-R neuropeptide Y receptor Y2 protein-coding 757-17 chr14 98301178 98301776 + 2 NA Intergenic Intergenic -323353 NR_015430 388011 Hs.651477 NR_015430 ENSG00000246223 LINC01550 C14orf64 long intergenic non-protein coding RNA 1550 ncRNA 410-159 chr2 222179689 222180083 + 2 NA Intergenic L1ME4b|LINE|L1 -118261 NR_161172 151278 Hs.350729 NM_153038 ENSG00000163081 CCDC140 - coiled-coil domain containing 140 ncRNA 318-592 chrX 94093666 94093973 + 2 NA Intergenic Intergenic 419613 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 290-266 chr22 48410027 48410179 + 2 NA Intergenic L1MC3|LINE|L1 -79450 NM_001082967 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 529-93 chr19 27666609 27666912 + 2 NA Intergenic ALR/Alpha|Satellite|centr -126671 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 280-312 chr5 19400532 19400751 + 2 NA Intergenic L1M5|LINE|L1 485631 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 224-142 chr2 60136642 60136860 + 2 NA Intergenic Intergenic 246285 NR_132991 106660609 Hs.565545 NR_132991 ENSG00000228590 MIR4432HG - MIR4432 host gene ncRNA 240-254 chr20 7079370 7079579 + 2 NA Intergenic L1MC3|LINE|L1 174728 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 948 chr1 5612456 5613120 + 2 NA Intergenic L1MB7|LINE|L1 249953 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 176-68 chr20 18232758 18232846 + 2 NA Intergenic L1MB3|LINE|L1 -55426 NM_001282995 7692 Hs.472221 NM_003434 ENSG00000125846 ZNF133 ZNF150|pHZ-13|pHZ-66 zinc finger protein 133 protein-coding 480-276 chr7 57162797 57163207 + 2 NA Intergenic Intergenic 17154 NR_030766 642006 Hs.562648 NR_030766 GUSBP10 - GUSB pseudogene 10 pseudo 227-44 chr10 70868868 70869044 + 2 NA intron (NM_003901, intron 8 of 14) intron (NM_003901, intron 8 of 14) 18925 NM_001289797 5092 Hs.3192 NM_000281 ENSG00000166228 PCBD1 DCOH|PCBD|PCD|PHS pterin-4 alpha-carbinolamine dehydratase 1 protein-coding 304-149 chr14 78312817 78313057 + 2 NA intron (NR_073547, intron 4 of 20) intron (NR_073547, intron 4 of 20) -90782 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 266-417 chr8 83654312 83654541 + 2 NA Intergenic Intergenic 250668 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 302-230 chr2 140717558 140717784 + 2 NA intron (NM_018557, intron 35 of 90) Plat_L3|LINE|CR1 -130986 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 237-25 chr1 239329374 239329584 + 2 NA Intergenic Intergenic -57089 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 122-2 chr1 107731546 107731621 + 2 NA intron (NM_006113, intron 15 of 26) L3|LINE|CR1 -43084 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 429-170 chr2 237941751 237942021 + 2 NA Intergenic MER89|LTR|ERV1 -25059 NR_037904 100533179 Hs.471785 NR_037904 ENSG00000258984 UBE2F-SCLY - UBE2F-SCLY readthrough (NMD candidate) ncRNA 361-456 chr8 117139936 117140125 + 2 NA intron (NM_173851, intron 1 of 7) L1M4b|LINE|L1 5035 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 698-77 chr6 164616453 164617079 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 205297 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 400-353 chr8 135137684 135138045 + 2 NA Intergenic MLT1A1-int|LTR|ERVL-MaLR -96267 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 179-78 chr4 35118004 35118168 + 2 NA Intergenic Intergenic -848339 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 335-410 chr5 12428831 12429119 + 2 NA Intergenic Intergenic -145882 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 603-174 chr9 28029160 28029646 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) -455537 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 243-126 chr14 59650758 59650936 + 2 NA intron (NM_021136, intron 3 of 8) L1PREC2|LINE|L1 -3827 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 121-70 chr8 127379402 127379469 + 2 NA intron (NR_117099, intron 3 of 3) intron (NR_117099, intron 3 of 3) -20964 NR_109834 101805488 Hs.745578 NR_109834 ENSG00000280997 CCAT2 LINC00873|NCCP1 colon cancer associated transcript 2 ncRNA 483-16 chr1 204773310 204773746 + 2 NA Intergenic Intergenic -55124 NM_001005389 23114 Hs.13349 NM_015090 ENSG00000163531 NFASC NEDCPMD|NF|NRCAML neurofascin protein-coding 425-172 chr21 31306911 31307130 + 2 NA intron (NM_001353686, intron 2 of 27) intron (NM_001353686, intron 2 of 27) 37334 NM_001353694 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 267-183 chr2 54933244 54933445 + 2 NA intron (NM_001039753, intron 27 of 40) intron (NM_001039753, intron 27 of 40) 76928 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 423-274 chr7 81431305 81431670 + 2 NA Intergenic AluJr|SINE|Alu 130332 NR_136264 105369146 Hs.730390 NR_136264 LOC105369146 - uncharacterized LOC105369146 ncRNA 418-228 chr5 163262459 163262870 + 2 NA Intergenic HAL1ME|LINE|L1 -174907 NR_157056 900 Hs.79101 NM_004060 ENSG00000113328 CCNG1 CCNG cyclin G1 protein-coding 430-54 chr11 55631231 55631630 + 2 NA Intergenic L1MEc|LINE|L1 -6928 NM_001004124 81300 NM_001004124 ENSG00000181927 OR4P4 OR4P3P olfactory receptor family 4 subfamily P member 4 protein-coding 240-101 chr12 20993936 20994076 + 2 NA intron (NM_001371097, intron 13 of 15) L1MEh|LINE|L1 -21690 NM_001009562 338821 Hs.729117 NM_001009562 ENSG00000205754 SLCO1B7 LST-3|LST-3TM12|LST3|SLC21A21 solute carrier organic anion transporter family member 1B7 (putative) protein-coding 882-14 chr17 6769050 6769675 + 2 NA intron (NR_046398, intron 3 of 4) L1MA7|LINE|L1 -6853 NM_153230 162517 Hs.368364 NM_153230 ENSG00000177294 FBXO39 CT144|Fbx39 F-box protein 39 protein-coding 340-321 chr20 44314639 44314913 + 2 NA Intergenic AluJo|SINE|Alu -3574 NM_001080472 128486 Hs.632269 NM_001080472 ENSG00000197296 FITM2 C20orf142|Fit2|dJ881L22.2 fat storage inducing transmembrane protein 2 protein-coding 186-156 chr7 109608743 109608870 + 2 NA Intergenic L1ME3B|LINE|L1 351407 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 579-187 chrX 127245787 127246190 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 426259 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 256-188 chr2 31585091 31585289 + 2 NA Intergenic L1PA8|LINE|L1 -4252 NM_000348 6716 Hs.458345 NM_000348 ENSG00000277893 SRD5A2 - steroid 5 alpha-reductase 2 protein-coding 263-268 chr3 145580838 145581080 + 2 NA Intergenic Intergenic 488226 NR_146297 109729161 NR_146297 ENSG00000240032 LNCSRLR lncRNA-SRLR lncRNA sorafenib resistance in renal cell carcinoma associated ncRNA 399-35 chr10 54217003 54217271 + 2 NA intron (NM_001354411, intron 9 of 34) L1MC5|LINE|L1 -269093 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 400-5 chr1 51165446 51165673 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 63331 NM_001136508 284546 Hs.176177 NM_001136508 ENSG00000204006 C1orf185 - chromosome 1 open reading frame 185 protein-coding 351-6 chr1 77519207 77519448 + 2 NA intron (NM_012093, intron 11 of 13) intron (NM_012093, intron 11 of 13) 163331 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 249-295 chr4 58587350 58587533 + 2 NA Intergenic L1MC4a|LINE|L1 -51113 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 266-409 chr8 49609267 49609430 + 2 NA Intergenic Intergenic -97168 NR_134294 100507464 Hs.245745 NR_134294 ENSG00000253380 LOC100507464 - uncharacterized LOC100507464 ncRNA 283-322 chr4 59011070 59011224 + 2 NA intron (NR_133941, intron 1 of 2) intron (NR_133941, intron 1 of 2) -2426 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 338-315 chr22 30142193 30142443 + 2 NA intron (NM_001329457, intron 11 of 11) L1M4b|LINE|L1 61854 NM_001329457 150280 Hs.120391 NM_152510 ENSG00000176635 HORMAD2 CT46.2 HORMA domain containing 2 protein-coding 134-3 chr1 71019003 71019111 + 2 NA intron (NM_198719, intron 1 of 3) intron (NM_198719, intron 1 of 3) -27449 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 301-270 chr22 47133467 47133727 + 2 NA intron (NM_001284305, intron 12 of 12) intron (NM_001284305, intron 12 of 12) -211974 NR_144462 339685 Hs.434351 NR_038922 ENSG00000224715 LOC339685 - uncharacterized LOC339685 ncRNA 473-163 chr21 23829394 23829669 + 2 NA Intergenic Intergenic -444696 NR_040254 266917 Hs.145622 NR_040254 ENSG00000228592 D21S2088E - D21S2088E ncRNA 207-280 chr7 135142258 135142405 + 2 NA intron (NM_001305630, intron 2 of 2) Tigger2b_Pri|DNA|TcMar-Tigger -5741 NM_018295 55281 Hs.521213 NM_018295 ENSG00000146859 TMEM140 - transmembrane protein 140 protein-coding 306-97 chr11 133282633 133282856 + 2 NA intron (NM_001012393, intron 1 of 7) MSTB-int|LTR|ERVL-MaLR 249757 NM_001319104 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 238-242 chr3 84083970 84084141 + 2 NA Intergenic Intergenic 785520 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 395-114 chr15 97225227 97225605 + 2 NA Intergenic L1M4a1|LINE|L1 296395 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 341-154 chr14 84122736 84122911 + 2 NA Intergenic Intergenic -1149109 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 142-48 chr21 26611262 26611349 + 2 NA Intergenic Intergenic -38019 NM_001320768 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 300-316 chr4 47155555 47155793 + 2 NA intron (NM_000812, intron 3 of 8) intron (NM_000812, intron 3 of 8) 124107 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 359-50 chr10 36082682 36082963 + 2 NA Intergenic L1PA11|LINE|L1 304520 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 308-328 chr4 46634663 46634865 + 2 NA Intergenic L1PA15|LINE|L1 -244636 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 862-23 chr3 81109040 81109829 + 2 NA Intergenic L1M3|LINE|L1 115566 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 163-8 chr1 171566022 171566164 + 2 NA intron (NM_015172, intron 20 of 33) intron (NM_015172, intron 20 of 33) -53670 NM_001368164 110806290 NM_001368164 MYOCOS - myocilin opposite strand protein-coding 236-157 chr19 51493700 51493839 + 2 NA intron (NM_053003, intron 7 of 7) L2a|LINE|L2 6624 NM_033329 89858 Hs.249741 NM_033329 ENSG00000254521 SIGLEC12 S2V|SIGLECL1|SLG|Siglec-XII sialic acid binding Ig like lectin 12 (gene/pseudogene) protein-coding 394-70 chr12 2443916 2444144 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 174254 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 391-51 chr10 130234067 130234406 + 2 NA Intergenic Intergenic 97827 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 367-411 chr7 15275400 15275732 + 2 NA intron (NM_001004320, intron 12 of 12) L1PA5|LINE|L1 286449 NM_001004320 392636 Hs.670634 NM_001004320 ENSG00000187546 AGMO TMEM195 alkylglycerol monooxygenase protein-coding 276-270 chr21 23183052 23183244 + 2 NA Intergenic MER21C|LTR|ERVL 103864 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 264-149 chr15 83304101 83304329 + 2 NA Intergenic Intergenic -19551 NM_001717 646 Hs.459153 NM_001717 ENSG00000169594 BNC1 BNC|BSN1|HsT19447 basonuclin 1 protein-coding 144-52 chr20 52846689 52846820 + 2 NA Intergenic Intergenic -125604 NM_173485 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 244-49 chr11 42912182 42912356 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 357100 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 269-26 chr1 189192186 189192372 + 2 NA Intergenic Intergenic 1283731 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 294-124 chr14 69500132 69500320 + 2 NA intron (NM_001161498, intron 2 of 12) intron (NM_001161498, intron 2 of 12) 15498 NM_001161498 400224 Hs.509796 NM_001161498 ENSG00000175985 PLEKHD1 UPF0639 pleckstrin homology and coiled-coil domain containing D1 protein-coding 222-131 chr16 53570213 53570422 + 2 NA Intergenic MLT1I-int|LTR|ERVL-MaLR -67013 NM_001012398 64400 Hs.380897 NM_022476 ENSG00000166971 AKTIP FT1|FTS AKT interacting protein protein-coding 236-209 chr22 34000283 34000449 + 2 NA Intergenic L1MEg|LINE|L1 -77478 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 333-407 chr4 103959827 103960128 + 2 NA Intergenic Intergenic -239992 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 260-155 chr16 3227932 3228086 + 2 NA intron (NM_198088, intron 4 of 4) L1M4|LINE|L1 7149 NM_198088 7752 Hs.632222 NM_003454 ENSG00000010539 ZNF200 - zinc finger protein 200 protein-coding 269-43 chr10 31731999 31732223 + 2 NA Intergenic L2|LINE|L2 176815 NM_001270699 94134 Hs.499264 NM_018287 ENSG00000165322 ARHGAP12 - Rho GTPase activating protein 12 protein-coding 421-273 chr7 17191200 17191470 + 2 NA Intergenic Intergenic -107317 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 169-109 chr6 114021457 114021623 + 2 NA intron (NR_125845, intron 4 of 9) L1MA8|LINE|L1 41337 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 349-279 chr2 185409786 185409996 + 2 NA Intergenic L1ME4a|LINE|L1 -242819 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 332-483 chr7 42405221 42405531 + 2 NA Intergenic Intergenic -168167 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 435-111 chr18 69788512 69788807 + 2 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 159214 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 334-229 chr18 67399327 67399495 + 2 NA Intergenic LTR37-int|LTR|ERV1 -117135 NR_033921 643542 Hs.652901 NR_033921 ENSG00000265533 LOC643542 - uncharacterized LOC643542 ncRNA 691-30 chr15 83727539 83728064 + 2 NA intron (NM_207517, intron 3 of 29) L1MA3|LINE|L1 73678 NM_207517 57188 Hs.459162 NM_207517 ENSG00000156218 ADAMTSL3 ADAMTSL-3 ADAMTS like 3 protein-coding 492-257 chr8 74641027 74641473 + 2 NA intron (NR_033830, intron 2 of 5) intron (NR_033830, intron 2 of 5) 41384 NR_033830 441355 Hs.647162 NR_033830 ENSG00000254349 MIR2052HG - MIR2052 host gene ncRNA 461-120 chr2 18772786 18773135 + 2 NA Intergenic Intergenic -183380 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 156-29 chr12 103306140 103306262 + 2 NA exon (NM_001278420, exon 6 of 7) exon (NM_001278420, exon 6 of 7) 154359 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 384-112 chr14 71375446 71375682 + 2 NA intron (NM_001354285, intron 2 of 24) L1M5|LINE|L1 -22773 NR_001276 319139 NR_001276 ENSG00000207444 SNORD56B RNU56B small nucleolar RNA, C/D box 56B snoRNA 205-81 chr14 49514195 49514305 + 2 NA Intergenic Intergenic 72130 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 369-366 chr6 144600560 144600785 + 2 NA intron (NM_007124, intron 50 of 73) Tigger1|DNA|TcMar-Tigger 195017 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 355-426 chr6 23776192 23776418 + 2 NA Intergenic MIRb|SINE|MIR -349910 NM_080723 140767 Hs.726270 NM_080723 ENSG00000152954 NRSN1 VMP|p24 neurensin 1 protein-coding 217-178 chr2 101076517 101076668 + 2 NA intron (NM_001102426, intron 2 of 19) L1MC5a|LINE|L1 74303 NM_000993 6160 Hs.469473 NM_000993 ENSG00000071082 RPL31 L31 ribosomal protein L31 protein-coding 281-462 chr9 111872446 111872657 + 2 NA Intergenic Intergenic -24263 NM_003358 7357 Hs.304249 NM_003358 ENSG00000148154 UGCG GCS|GLCT1 UDP-glucose ceramide glucosyltransferase protein-coding 199-30 chr10 129100860 129101047 + 2 NA Intergenic Intergenic 188120 NR_148990 728327 Hs.454452 NR_148990 ENSG00000224190 LINC02667 - long intergenic non-protein coding RNA 2667 ncRNA 381-126 chr16 73493228 73493455 + 2 NA Intergenic Intergenic 106536 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 385-45 chr11 14158378 14158640 + 2 NA intron (NM_006108, intron 6 of 15) intron (NM_006108, intron 6 of 15) 195786 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 770-73 chr8 135092703 135093326 + 2 NA Intergenic Intergenic -141117 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 326-424 chr5 110220960 110221175 + 2 NA Intergenic Intergenic 292848 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 196-236 chr7 75836913 75837054 + 2 NA Intergenic L1M4|LINE|L1 -13611 NM_001371193 197-146 chr3 185051727 185051892 + 2 NA intron (NM_001009921, intron 46 of 46) intron (NM_001009921, intron 46 of 46) 101251 NM_001025266 285382 Hs.245793 NM_001025266 ENSG00000187068 C3orf70 - chromosome 3 open reading frame 70 protein-coding 338-469 chr6 40240688 40241008 + 2 NA Intergenic L1PA14|LINE|L1 115158 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 279-265 chr3 98368137 98368374 + 2 NA Intergenic L1M1|LINE|L1 14401 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 429-184 chr22 34887022 34887290 + 2 NA intron (NR_138042, intron 3 of 4) Charlie24|DNA|hAT-Charlie 110760 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 222-59 chr11 27526010 27526195 + 2 NA intron (NR_033314, intron 1 of 6) intron (NR_033314, intron 1 of 6) -11055 NR_107054 102465881 NR_107054 ENSG00000278483 MIR8087 hsa-mir-8087 microRNA 8087 ncRNA 127-71 chr6 64143044 64143125 + 2 NA intron (NM_001292009, intron 31 of 43) L1MC1|LINE|L1 336248 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 788-13 chr12 30697984 30698638 + 2 NA Intergenic Intergenic -2442 NM_006390 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 305-482 chr6 125449780 125450006 + 2 NA Intergenic Intergenic -147926 NM_016063 51020 Hs.32826 NM_016063 ENSG00000111906 HDDC2 C6orf74|CGI-130|NS5ATP2|dJ167O5.2 HD domain containing 2 protein-coding 151-89 chr9 3972737 3972834 + 2 NA intron (NM_001042413, intron 4 of 10) intron (NM_001042413, intron 4 of 10) 74139 NR_026663 84850 Hs.676113 NM_032764 ENSG00000237009 GLIS3-AS1 C9orf70 GLIS3 antisense RNA 1 ncRNA 345-400 chr5 2464424 2464619 + 2 NA Intergenic Intergenic -152320 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 368-109 chr12 65544210 65544542 + 2 NA non-coding (NR_135033, exon 3 of 3) non-coding (NR_135033, exon 3 of 3) 12935 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 340-22 chr1 117107180 117107390 + 2 NA 3' UTR (NM_003594, exon 23 of 23) 3' UTR (NM_003594, exon 23 of 23) 12642 NR_030640 100126331 NR_030640 ENSG00000215930 MIR942 MIRN942|hsa-mir-942|mir-942 microRNA 942 ncRNA 249-209 chr2 113277778 113277949 + 2 NA intron (NM_013952, intron 2 of 11) CpG 1058 NM_013953 7849 Hs.469728 NM_003466 ENSG00000125618 PAX8 - paired box 8 protein-coding 359-419 chr6 20824439 20824657 + 2 NA intron (NM_017774, intron 8 of 15) MLT1F2|LTR|ERVL-MaLR 290091 NM_017774 54901 Hs.657604 NM_017774 ENSG00000145996 CDKAL1 - CDK5 regulatory subunit associated protein 1 like 1 protein-coding 393-368 chr8 129747437 129747670 + 2 NA TTS (NM_031415) TTS (NM_031415) 39071 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 353-6 chr1 41802059 41802257 + 2 NA intron (NM_024503, intron 1 of 8) intron (NM_024503, intron 1 of 8) 116764 NR_038260 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 287-333 chr5 153006367 153006526 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -34097 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 355-360 chr4 46827775 46828111 + 2 NA intron (NM_130902, intron 2 of 2) L1ME1|LINE|L1 81302 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 425-289 chr7 99842007 99842379 + 2 NA intron (NM_001278921, intron 4 of 9) L1ME3G|LINE|L1 14180 NR_103869 64816 Hs.306220 NM_022820 ENSG00000021461 CYP3A43 - cytochrome P450 family 3 subfamily A member 43 protein-coding 226-277 chr5 41437600 41437792 + 2 NA intron (NM_001005473, intron 1 of 2) L2a|LINE|L2 72905 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 255-359 chr6 91071476 91071667 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR -450089 NR_039786 100616174 NR_039786 ENSG00000263734 MIR4643 - microRNA 4643 ncRNA 557-184 chr7 48417336 48417680 + 2 NA intron (NM_152701, intron 41 of 61) intron (NM_152701, intron 41 of 61) 246050 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 334-345 chr3 67124450 67124643 + 2 NA Intergenic MIRb|SINE|MIR -100918 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 481-190 chr3 5446822 5447164 + 2 NA Intergenic L1M4|LINE|L1 -196738 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 354-267 chr21 23052160 23052489 + 2 NA Intergenic L1M8|LINE|L1 -26960 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 368-35 chr1 242758734 242758966 + 2 NA Intergenic L1MEc|LINE|L1 -234153 NM_001320272 200150 Hs.672452 NM_152666 ENSG00000180287 PLD5 PLDC phospholipase D family member 5 protein-coding 528-148 chr20 52575766 52576278 + 2 NA Intergenic Intergenic -44816 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 315-66 chr10 78616267 78616464 + 2 NA Intergenic MIRb|SINE|MIR 349023 NR_073447 414243 Hs.55047 NR_073447 ENSG00000230417 LINC00595 C10orf101 long intergenic non-protein coding RNA 595 ncRNA 415-244 chr6 136152593 136152891 + 2 NA intron (NM_018945, intron 6 of 12) intron (NM_018945, intron 6 of 12) -79915 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 256-293 chr4 90503115 90503336 + 2 NA intron (NM_207491, intron 5 of 7) HERV35I-int|LTR|ERV1 268194 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 380-254 chr3 106724233 106724447 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 516298 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 265-182 chr2 70824646 70824861 + 2 NA Intergenic L1MC3|LINE|L1 -4154 NM_173535 165530 Hs.681239 NM_173535 ENSG00000152672 CLEC4F CLECSF13|KCLR C-type lectin domain family 4 member F protein-coding 249-413 chr8 81060702 81060849 + 2 NA intron (NM_018440, intron 2 of 8) intron (NM_018440, intron 2 of 8) 51293 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 479-38 chr12 9387134 9387433 + 2 NA intron (NR_120479, intron 2 of 3) L1MB7|LINE|L1 -5861 NR_120481 101928030 Hs.201719 NR_120481 LOC101928030 - uncharacterized LOC101928030 ncRNA 157-39 chr14 72298041 72298138 + 2 NA intron (NM_001370288, intron 2 of 16) L1ME2|LINE|L1 -218731 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 394-12 chr1 88582159 88582481 + 2 NA intron (NR_110682, intron 1 of 3) L1MA3|LINE|L1 -101824 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 414-39 chr11 12623672 12623978 + 2 NA Intergenic L1MB7|LINE|L1 -50596 NM_021961 7003 Hs.655331 NM_021961 ENSG00000187079 TEAD1 AA|NTEF-1|REF1|TCF-13|TCF13|TEAD-1|TEF-1 TEA domain transcription factor 1 protein-coding 343-593 chrX 80951897 80952092 + 2 NA Intergenic L1MEf|LINE|L1 -142117 NM_153252 254065 Hs.147027 NM_153252 ENSG00000165288 BRWD3 BRODL|MRX93 bromodomain and WD repeat domain containing 3 protein-coding 297-15 chr1 84902381 84902575 + 2 NA Intergenic L1M5|LINE|L1 -9272 NM_012152 23566 Hs.527909 NM_012152 ENSG00000171517 LPAR3 EDG7|Edg-7|GPCR|HOFNH30|LP-A3|LPA3|RP4-678I3 lysophosphatidic acid receptor 3 protein-coding 289-302 chr3 81365591 81365864 + 2 NA Intergenic L1MEf|LINE|L1 371859 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 324-387 chr4 57436475 57436660 + 2 NA intron (NR_125907, intron 4 of 5) intron (NR_125907, intron 4 of 5) 10695 NR_125907 101928851 Hs.555072 NR_125907 ENSG00000248505 LINC02380 - long intergenic non-protein coding RNA 2380 ncRNA 339-190 chr16 26309075 26309303 + 2 NA Intergenic Intergenic 283952 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 299-363 chr5 43217144 43217343 + 2 NA intron (NR_072980, intron 1 of 3) L1MB8|LINE|L1 24391 NR_072980 167359 Hs.25845 NM_153361 ENSG00000177453 NIM1K NIM1 NIM1 serine/threonine protein kinase protein-coding 286-286 chr3 84819759 84819945 + 2 NA intron (NR_033860, intron 8 of 20) L1M4b|LINE|L1 49723 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 392-301 chr7 32198152 32198528 + 2 NA intron (NM_001322059, intron 2 of 17) intron (NM_001322059, intron 2 of 17) 100988 NM_001322058 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 360-403 chr6 54982935 54983157 + 2 NA Intergenic LTR52|LTR|ERVL -123414 NM_001526 3062 Hs.151624 NM_001526 ENSG00000137252 HCRTR2 OX2R hypocretin receptor 2 protein-coding 301-146 chr16 51367738 51367912 + 2 NA intron (NR_039672, intron 6 of 6) L2a|LINE|L2 -216553 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 556-140 chr3 5711853 5712203 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 -461773 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 417-120 chr18 70857994 70858252 + 2 NA Intergenic L1MDb|LINE|L1 -207169 NR_160904 220158 Hs.448217 NM_178506 GTSCR1 - Gilles de la Tourette syndrome chromosome region, candidate 1 ncRNA 302-116 chr13 71423948 71424222 + 2 NA Intergenic L1MA9|LINE|L1 408944 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 267-86 chr12 52772334 52772531 + 2 NA intron (NM_015848, intron 4 of 8) intron (NM_015848, intron 4 of 8) 4913 NM_015848 51350 Hs.654392 NM_015848 ENSG00000185069 KRT76 HUMCYT2A|KRT2B|KRT2P keratin 76 protein-coding 337-479 chr6 40081820 40082077 + 2 NA Intergenic Intergenic -147486 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 390-404 chr8 138616129 138616475 + 2 NA intron (NM_152888, intron 54 of 64) intron (NM_152888, intron 54 of 64) -118572 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 217-134 chr16 9567002 9567210 + 2 NA Intergenic LTR16|LTR|ERVL -111601 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 603-53 chr14 82342639 82343229 + 2 NA Intergenic Intergenic -299698 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 218-99 chr14 79226245 79226409 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 26345 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 298-121 chr14 63821199 63821406 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -31663 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 515-203 chr5 46082721 46083098 + 2 NA Intergenic ALR/Alpha|Satellite|centr -386529 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 287-321 chr5 101584104 101584271 + 2 NA Intergenic Intergenic -680905 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 430-209 chr4 36860923 36861271 + 2 NA Intergenic Intergenic -140682 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 566-76 chr19 9396330 9396745 + 2 NA Intergenic AluSx4|SINE|Alu 20221 NM_001172651 7730 Hs.728944 NM_003451 ENSG00000188629 ZNF177 PIGX zinc finger protein 177 protein-coding 196-167 chr3 43353125 43353278 + 2 NA Intergenic L1MEc|LINE|L1 -1239 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 375-463 chrX 47675619 47675984 + 2 NA Intergenic Intergenic -16621 NM_153477 8409 Hs.172791 NM_004182 ENSG00000126756 UXT ART-27|STAP1 ubiquitously expressed prefoldin like chaperone protein-coding 251-63 chr12 26761390 26761550 + 2 NA intron (NM_002223, intron 2 of 56) L1M2|LINE|L1 71724 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 428-141 chr2 156821502 156821868 + 2 NA Intergenic Intergenic 385306 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 536-54 chr11 103979927 103980408 + 2 NA intron (NM_025208, intron 3 of 6) intron (NM_025208, intron 3 of 6) -56473 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 247-399 chr8 57906160 57906382 + 2 NA Intergenic LTR37B|LTR|ERV1 -72087 NR_130934 100505477 Hs.434693 NR_130934 ENSG00000205293 LINC01602 T1560 long intergenic non-protein coding RNA 1602 ncRNA 280-311 chr5 18153663 18153896 + 2 NA Intergenic Intergenic 346505 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 336-113 chr11 124457672 124457951 + 2 NA Intergenic Intergenic -16726 NM_012378 26493 Hs.351822 NM_012378 ENSG00000197125 OR8B8 TPCR85 olfactory receptor family 8 subfamily B member 8 protein-coding 493-38 chr10 96774608 96775017 + 2 NA Intergenic MIRc|SINE|MIR 24546 NR_026712 728658 Hs.645344 NR_026712 ENSG00000236552 RPL13AP5 RPL13A_8_1086|bA196N24.2 ribosomal protein L13a pseudogene 5 pseudo 350-328 chr3 152852747 152853038 + 2 NA Intergenic L1MD2|LINE|L1 17761 NM_002563 5028 Hs.79881 NM_002563 ENSG00000169860 P2RY1 P2Y1|SARCC purinergic receptor P2Y1 protein-coding 222-178 chr2 95088952 95089162 + 2 NA intron (NR_136152, intron 10 of 10) AluSg|SINE|Alu 32500 NM_001321997 64969 Hs.655259 NM_031902 ENSG00000144029 MRPS5 MRP-S5|S5mt mitochondrial ribosomal protein S5 protein-coding 186-29 chr12 2328293 2328427 + 2 NA intron (NM_199460, intron 3 of 49).2 intron (NM_199460, intron 3 of 49).2 58584 NR_046769 100874370 Hs.653548 NR_046769 CACNA1C-IT3 - CACNA1C intronic transcript 3 ncRNA 479-62 chr14 59653567 59653893 + 2 NA intron (NM_021136, intron 3 of 8) L1MB7|LINE|L1 -6710 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 371-3 chr1 38277505 38277803 + 2 NA Intergenic L1ME1|LINE|L1 -62887 NR_038928 339442 Hs.434245 NR_038928 ENSG00000237290 LINC01343 - long intergenic non-protein coding RNA 1343 ncRNA 967-18 chr5 3678193 3678861 + 2 NA Intergenic Intergenic 82695 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 145-16 chr11 21416160 21416282 + 2 NA intron (NM_201551, intron 15 of 18) intron (NM_201551, intron 15 of 18) 746635 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 504-238 chr7 41043487 41043913 + 2 NA Intergenic Intergenic -57904 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 343-5 chr1 33858923 33859210 + 2 NA intron (NM_052896, intron 5 of 69) intron (NM_052896, intron 5 of 69) -1409 NM_145205 127540 Hs.568628 NM_145205 ENSG00000176256 HMGB4 dJ1007G16.5 high mobility group box 4 protein-coding 433-25 chr10 61225517 61225761 + 2 NA Intergenic L1MCb|LINE|L1 209364 NR_108052 100507058 Hs.145227 NR_108052 ENSG00000227244 LINC00845 - long intergenic non-protein coding RNA 845 ncRNA 511-60 chr13 79472349 79472744 + 2 NA Intergenic AluJo|SINE|Alu -8578 NM_001161407 54602 Hs.525093 NM_019080 ENSG00000102471 NDFIP2 N4WBP5A Nedd4 family interacting protein 2 protein-coding 180-175 chr8 118757149 118757304 + 2 NA Intergenic Intergenic -135263 NM_001363274 401474 Hs.359393 NM_207506 ENSG00000177570 SAMD12 - sterile alpha motif domain containing 12 protein-coding 129-24 chr15 101511883 101511982 + 2 NA Intergenic (AAAT)n|Simple_repeat|Simple_repeat -21948 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 576-90 chr2 139095254 139095773 + 2 NA Intergenic L1MC1|LINE|L1 198189 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 267-339 chr5 91555012 91555205 + 2 NA Intergenic Intergenic -171791 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 446-314 chr8 131088845 131089138 + 2 NA Intergenic L1MEi|LINE|L1 -48082 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 407-71 chr13 19287462 19287755 + 2 NA intron (NR_027248, intron 15 of 20) L1M3|LINE|L1 57365 NR_027248 100101938 Hs.129283 NR_027248 ANKRD26P3 LINC00414 ankyrin repeat domain 26 pseudogene 3 pseudo 197-64 chr15 46200307 46200497 + 2 NA Intergenic L1MA8|LINE|L1 495207 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 351-406 chr5 177356713 177356941 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -1097 NM_006480 10636 Hs.9347 NM_006480 ENSG00000169220 RGS14 - regulator of G protein signaling 14 protein-coding 387-122 chr15 73059306 73059603 + 2 NA intron (NM_002499, intron 1 of 28) intron (NM_002499, intron 1 of 28) 6970 NM_001172623 4756 Hs.388613 NM_002499 ENSG00000067141 NEO1 IGDCC2|NGN|NTN1R2 neogenin 1 protein-coding 375-205 chr2 47213864 47214098 + 2 NA TTS (NR_110207) TTS (NR_110207) -37045 NM_001305625 805 Hs.468442 NM_001743 ENSG00000143933 CALM2 CALM|CALML2|CAM1|CAM3|CAMC|CAMII|CAMIII|LQT15|PHKD|PHKD2|caM calmodulin 2 protein-coding 318-90 chr10 132381322 132381498 + 2 NA TTS (NM_030626) TTS (NM_030626) -15790 NM_001098637 170394 Hs.527751 NM_138499 ENSG00000171813 PWWP2B PWWP2|bA432J24.1|pp8607 PWWP domain containing 2B protein-coding 652-64 chr2 57375172 57375782 + 2 NA Intergenic Intergenic -532174 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 282-76 chr11 100652452 100652725 + 2 NA Intergenic L1PB1|LINE|L1 -34700 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 338-42 chr1 244570371 244570581 + 2 NA intron (NM_001130957, intron 10 of 21) L1ME4b|LINE|L1 -82572 NR_123735 51029 Hs.498317 NM_016076 ENSG00000121644 DESI2 C1orf121|CGI-146|DESI|DESI1|DeSI-2|FAM152A|PNAS-4|PPPDE1 desumoylating isopeptidase 2 protein-coding 355-455 chr7 21052491 21052797 + 2 NA Intergenic Intergenic 217213 NR_126381 104355138 Hs.650722 NR_126381 ENSG00000232790 LINC01162 - long intergenic non-protein coding RNA 1162 ncRNA 628-84 chr22 44710177 44710726 + 2 NA intron (NM_181334, intron 1 of 14) intron (NM_181334, intron 1 of 14) 8247 NM_181333 55615 Hs.102336 NM_015366 ENSG00000186654 PRR5 FLJ20185k|PP610|PROTOR-1|PROTOR1 proline rich 5 protein-coding 421-90 chr14 97713349 97713757 + 2 NA Intergenic Intergenic -26895 NR_033943 100129345 Hs.23632 NR_033943 ENSG00000197176 LINC02291 - long intergenic non-protein coding RNA 2291 ncRNA 681-14 chr12 19822790 19823340 + 2 NA Intergenic L2b|LINE|L2 -191620 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 368-8 chr1 49506101 49506417 + 2 NA intron (NR_136623, intron 2 of 12) MER58D|DNA|hAT-Charlie -34174 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 280-226 chr2 225845255 225845507 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR -297413 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 246-314 chr5 13571111 13571320 + 2 NA Intergenic L2|LINE|L2 373265 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 327-395 chr5 46228504 46228807 + 2 NA Intergenic ALR/Alpha|Satellite|centr -532275 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 433-39 chr11 28994881 28995235 + 2 NA Intergenic Intergenic -517510 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 256-46 chr10 65135004 65135234 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -210601 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 351-415 chr6 41279190 41279385 + 2 NA TTS (NM_001242589) TTS (NM_001242589) 7395 NM_001242589 54210 Hs.283022 NM_018643 ENSG00000124731 TREM1 CD354|TREM-1 triggering receptor expressed on myeloid cells 1 protein-coding 218-205 chr3 28922267 28922454 + 2 NA Intergenic L1ME3G|LINE|L1 347082 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 243-280 chr3 68120797 68121033 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 116668 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 355-382 chr4 167974553 167974870 + 2 NA Intergenic L1PA13|LINE|L1 -117826 NM_007193 11199 Hs.188401 NM_007193 ENSG00000109511 ANXA10 ANX14 annexin A10 protein-coding 333-244 chr2 74767668 74767997 + 2 NA Intergenic Intergenic -64823 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 270-37 chr10 57544303 57544476 + 2 NA Intergenic L1ME1|LINE|L1 -239830 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 283-327 chr4 69911020 69911257 + 2 NA Intergenic Intergenic -19930 NM_001890 1446 Hs.3155 NM_001890 ENSG00000126545 CSN1S1 CASA|CSN1 casein alpha s1 protein-coding 232-288 chr5 8216765 8216991 + 2 NA Intergenic LTR1A2|LTR|ERV1 240686 NR_039984 729506 Hs.566412 NR_039984 ENSG00000245729 LINC02226 - long intergenic non-protein coding RNA 2226 ncRNA 193-220 chrX 100242481 100242628 + 2 NA Intergenic L1MA9|LINE|L1 167719 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 247-290 chr4 37284906 37285074 + 2 NA intron (NM_001144990, intron 1 of 6) intron (NM_001144990, intron 1 of 6) 40247 NM_001144990 57495 Hs.4280 NM_001144990 ENSG00000174145 NWD2 KIAA1239 NACHT and WD repeat domain containing 2 protein-coding 410-239 chr5 54017969 54018267 + 2 NA intron (NM_019087, intron 4 of 4) intron (NM_019087, intron 4 of 4) -66519 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 203-84 chr16 82341804 82341991 + 2 NA Intergenic Intergenic -171673 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 370-374 chr5 89525455 89525659 + 2 NA Intergenic Intergenic 491163 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 191-119 chr2 239616940 239617099 + 2 NA Intergenic AluSz6|SINE|Alu -145841 NR_037808 150935 Hs.555582 NR_037808 LOC150935 - uncharacterized LOC150935 ncRNA 174-106 chr5 7985051 7985167 + 2 NA Intergenic L2|LINE|L2 115961 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 196-113 chr2 14441247 14441414 + 2 NA Intergenic Intergenic -40372 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 286-246 chr20 25429551 25429783 + 2 NA intron (NM_021067, intron 5 of 6) L1MB3|LINE|L1 21984 NR_134574 9837 Hs.658464 NM_021067 ENSG00000101003 GINS1 IMD55|PSF1 GINS complex subunit 1 protein-coding 393-69 chr12 28608836 28609107 + 2 NA Intergenic L1M3de|LINE|L1 -418233 NR_148936 729291 Hs.129278 NR_148936 LOC729291 - uncharacterized LOC729291 ncRNA 167-64 chr2 170295581 170295702 + 2 NA intron (NM_001083615, intron 7 of 33) L1MEd|LINE|L1 55302 NR_110576 101929753 Hs.534101 NR_110576 MYO3B-AS1 - MYO3B antisense RNA 1 ncRNA 142-31 chr18 22985166 22985266 + 2 NA intron (NM_002894, intron 8 of 18) intron (NM_002894, intron 8 of 18) 51340 NM_203292 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 452-186 chr4 73803376 73803659 + 2 NA Intergenic L1PA15|LINE|L1 -33161 NM_002993 6372 Hs.164021 NM_002993 ENSG00000124875 CXCL6 CKA-3|GCP-2|GCP2|SCYB6 C-X-C motif chemokine ligand 6 protein-coding 306-67 chr10 116563245 116563434 + 2 NA intron (NM_000936, intron 12 of 12) Tigger4a|DNA|TcMar-Tigger 17408 NM_000936 5406 Hs.501135 NM_000936 ENSG00000175535 PNLIP PL|PNLIPD|PTL pancreatic lipase protein-coding 385-323 chr6 41348288 41348646 + 2 NA intron (NM_001199510, intron 5 of 5) MLT1F1-int|LTR|ERVL-MaLR 12859 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 250-198 chr2 48797355 48797509 + 2 NA Intergenic Intergenic -41708 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 540-201 chr7 108567296 108567672 + 2 NA intron (NM_001287599, intron 1 of 2) intron (NM_001287599, intron 1 of 2) 1969 NM_001287598 168451 Hs.707689 NM_182529 ENSG00000177683 THAP5 - THAP domain containing 5 protein-coding 208-42 chr11 92102808 92102959 + 2 NA Intergenic Intergenic -122151 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 218-129 chr18 2818648 2818814 + 2 NA Intergenic L1M4c|LINE|L1 -28275 NM_032048 84034 Hs.532815 NM_032048 ENSG00000132205 EMILIN2 EMILIN-2|FOAP-10 elastin microfibril interfacer 2 protein-coding 262-132 chr14 82111760 82111952 + 2 NA Intergenic Intergenic -368718 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 244-266 chr4 80011936 80012076 + 2 NA intron (NM_001286781, intron 11 of 16) intron (NM_001286781, intron 11 of 16) 61223 NM_058172 118429 Hs.162963 NM_058172 ENSG00000163297 ANTXR2 CMG-2|CMG2|HFS|ISH|JHF ANTXR cell adhesion molecule 2 protein-coding 311-91 chr12 11909039 11909248 + 2 NA Intergenic Intergenic -140718 NM_001370269 79370 Hs.210343 NM_030766 ENSG00000121380 BCL2L14 BCLG BCL2 like 14 protein-coding 387-206 chr20 46510779 46510982 + 2 NA intron (NM_001353826, intron 1 of 4) intron (NM_001353826, intron 1 of 4) 2692 NM_001353823 55713 Hs.147041 NM_018102 ENSG00000198185 ZNF334 - zinc finger protein 334 protein-coding 149-78 chr4 70585277 70585370 + 2 NA Intergenic L1ME4c|LINE|L1 -6933 NM_016519 258 Hs.272396 NM_016519 ENSG00000178522 AMBN AI1F ameloblastin protein-coding 1076-6 chr11 55905066 55905958 + 2 NA Intergenic Intergenic 9070 NM_001001960 390148 Hs.554526 NM_001001960 ENSG00000187612 OR5W2 OR5W2P|OR5W3P olfactory receptor family 5 subfamily W member 2 protein-coding 258-37 chr1 239603650 239603902 + 2 NA intron (NM_001347716, intron 3 of 7) intron (NM_001347716, intron 3 of 7) -25297 NM_000740 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 744-71 chr7 114828928 114829592 + 2 NA Intergenic L1MEi|LINE|L1 -92894 NM_199072 29969 Hs.741413 NM_199072 ENSG00000135272 MDFIC HIC|MDFIC1 MyoD family inhibitor domain containing protein-coding 479-191 chr5 45031354 45031618 + 2 NA Intergenic MER31-int|LTR|ERV1 222539 NM_016640 10884 Hs.124165 NM_016640 ENSG00000112996 MRPS30 MRP-S30|PAP|PDCD9|S30mt mitochondrial ribosomal protein S30 protein-coding 327-415 chr5 121628452 121628627 + 2 NA Intergenic L1M5|LINE|L1 -223343 NM_177478 94033 Hs.105324 NM_177478 ENSG00000181867 FTMT MTF ferritin mitochondrial protein-coding 270-41 chr10 76664250 76664447 + 2 NA Intergenic L1MB2|LINE|L1 -223696 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 274-358 chr7 77437255 77437427 + 2 NA Intergenic Intergenic -20992 NM_001350899 54103 Hs.186649 NM_017439 ENSG00000186088 GSAP PION gamma-secretase activating protein protein-coding 292-202 chr2 27875455 27875690 + 2 NA intron (NM_001287580, intron 1 of 8) AluJr|SINE|Alu -13137 NM_001329112 9577 Hs.258314 NM_004899 ENSG00000158019 BABAM2 BRCC4|BRCC45|BRE BRISC and BRCA1 A complex member 2 protein-coding 255-249 chr3 2298658 2298850 + 2 NA intron (NM_001206955, intron 1 of 23) intron (NM_001206955, intron 1 of 23) 59925 NM_001206955 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 317-504 chr8 129216914 129217119 + 2 NA non-coding (NR_033916, exon 3 of 3) non-coding (NR_033916, exon 3 of 3) 24224 NR_033916 728724 Hs.49902 NR_033916 ENSG00000229140 LINC00977 - long intergenic non-protein coding RNA 977 ncRNA 291-333 chr4 154467178 154467450 + 2 NA intron (NM_001358235, intron 1 of 19) intron (NM_001358235, intron 1 of 19) 24485 NM_001142552 54798 Hs.655664 NM_017639 ENSG00000197410 DCHS2 CDH27|CDHJ|CDHR7|PCDH23|PCDHJ dachsous cadherin-related 2 protein-coding 181-35 chr12 75333610 75333780 + 2 NA promoter-TSS (NM_152779) promoter-TSS (NM_152779) -975 NM_001304964 256710 Hs.567788 NM_152779 ENSG00000173401 GLIPR1L1 ALKN2972|PRO7434 GLIPR1 like 1 protein-coding 442-95 chr16 7541906 7542204 + 2 NA intron (NM_145893, intron 2 of 13) intron (NM_145893, intron 2 of 13) 209210 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 272-43 chr10 33684309 33684504 + 2 NA Intergenic Intergenic 88274 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 320-236 chr19 28789283 28789521 + 2 NA Intergenic Intergenic -61708 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 254-12 chr1 92219005 92219156 + 2 NA intron (NM_001012425, intron 1 of 5) intron (NM_001012425, intron 1 of 5) 1165 NM_001012425 388649 Hs.558823 NM_001012425 ENSG00000203910 C1orf146 - chromosome 1 open reading frame 146 protein-coding 173-130 chr7 47254711 47254839 + 2 NA Intergenic Intergenic 210028 NR_145813 109623468 NR_145813 SNORD151 - small nucleolar RNA, C/D box 151 snoRNA 322-517 chr8 52953582 52953787 + 2 NA Intergenic LTR12C|LTR|ERV1 13776 NM_005285 2831 Hs.248117 NM_005285 ENSG00000183729 NPBWR1 GPR7 neuropeptides B and W receptor 1 protein-coding 221-89 chr14 72362995 72363179 + 2 NA intron (NM_001370288, intron 3 of 16) intron (NM_001370288, intron 3 of 16) -153733 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 272-113 chr14 47356585 47356743 + 2 NA intron (NM_001113498, intron 1 of 16) intron (NM_001113498, intron 1 of 16) -13418 NR_103766 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 329-88 chr11 14726163 14726364 + 2 NA intron (NM_000922, intron 1 of 15) L2a|LINE|L2 82459 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 305-235 chr2 13106963 13107126 + 2 NA Intergenic L1M5|LINE|L1 -100031 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 260-288 chr3 147673725 147673928 + 2 NA Intergenic Intergenic 252499 NR_121655 440982 Hs.535724 NR_121655 LOC440982 - uncharacterized LOC440982 ncRNA 330-103 chr11 99735224 99735521 + 2 NA intron (NM_175566, intron 1 of 21) intron (NM_175566, intron 1 of 21) 179227 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 291-71 chr11 28338881 28339158 + 2 NA Intergenic L1MEg|LINE|L1 138529 NR_107035 102466876 NR_107035 ENSG00000273912 MIR8068 hsa-mir-8068 microRNA 8068 ncRNA 208-119 chr2 79734197 79734350 + 2 NA intron (NM_001282598, intron 2 of 17) intron (NM_001282598, intron 2 of 17) -84914 NR_036231 100422888 NR_036231 ENSG00000266436 MIR4264 - microRNA 4264 ncRNA 258-225 chr20 11072373 11072587 + 2 NA Intergenic Intergenic 45936 NR_146878 728434 Hs.570365 NR_146878 ENSG00000125899 C20orf187 - chromosome 20 open reading frame 187 (putative) ncRNA 456-325 chr8 121082223 121082563 + 2 NA Intergenic Intergenic -270347 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 343-385 chr4 54870912 54871178 + 2 NA Intergenic Intergenic 213117 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 340-335 chr21 29146774 29147013 + 2 NA intron (NM_001286624, intron 1 of 3) intron (NM_001286624, intron 1 of 3) 1316 NM_001286624 56911 Hs.222802 NM_020152 ENSG00000156265 MAP3K7CL C21orf7|HC21ORF7|TAK1L|TAKL|TAKL-1|TAKL-2|TAKL-4 MAP3K7 C-terminal like protein-coding 219-12 chr1 106058787 106058970 + 2 NA Intergenic Intergenic -30625 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 246-399 chr8 86755513 86755684 + 2 NA Intergenic Intergenic -11923 NM_019098 54714 Hs.154433 NM_019098 ENSG00000170289 CNGB3 ACHM1 cyclic nucleotide gated channel beta 3 protein-coding 239-388 chr8 7049988 7050182 + 2 NA Intergenic L1M1|LINE|L1 6654 NM_021010 1670 Hs.655233 NM_021010 ENSG00000164816 DEFA5 DEF5|HD-5 defensin alpha 5 protein-coding 257-294 chr4 39586995 39587184 + 2 NA intron (NM_174921, intron 2 of 4) MLT1A|LTR|ERVL-MaLR 40032 NM_001317897 201895 Hs.205952 NM_174921 ENSG00000163683 SMIM14 C4orf34 small integral membrane protein 14 protein-coding 243-142 chr15 70863144 70863289 + 2 NA intron (NM_001284357, intron 1 of 16) MER5A|DNA|hAT-Charlie -9059 NM_018357 55323 Hs.416755 NM_018357 ENSG00000166173 LARP6 ACHN La ribonucleoprotein domain family member 6 protein-coding 256-409 chr8 56172012 56172187 + 2 NA intron (NM_001114634, intron 1 of 3) intron (NM_001114634, intron 1 of 3) 39174 NM_002655 5324 Hs.14968 NM_002655 ENSG00000181690 PLAG1 PSA|SGPA|ZNF912 PLAG1 zinc finger protein-coding 176-3 chr1 73784393 73784529 + 2 NA Intergenic Intergenic 109782 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 428-147 chr2 210408527 210408906 + 2 NA intron (NR_110606, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR 67989 NM_001136574 10314 Hs.13351 NM_006055 ENSG00000115365 LANCL1 GPR69A|p40 LanC like 1 protein-coding 303-406 chr6 151916238 151916483 + 2 NA intron (NM_001122741, intron 4 of 8) intron (NM_001122741, intron 4 of 8) 107253 NM_001328100 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 319-203 chr18 37509983 37510153 + 2 NA intron (NM_001353724, intron 1 of 12) L1MB5|LINE|L1 -24276 NM_001353757 56853 Hs.435976 NM_020180 ENSG00000101489 CELF4 BRUNOL4|CELF-4 CUGBP Elav-like family member 4 protein-coding 239-201 chr2 188821170 188821356 + 2 NA Intergenic L1M4|LINE|L1 -31140 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 355-77 chr10 132435167 132435379 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -9916 NR_149317 170393 Hs.375059 NR_149317 C10orf91 - chromosome 10 open reading frame 91 (putative) ncRNA 270-124 chr15 58312417 58312593 + 2 NA Intergenic L1ME4a|LINE|L1 -119486 NM_000236 3990 Hs.654472 NM_000236 ENSG00000166035 LIPC HDLCQ12|HL|HTGL|LIPH lipase C, hepatic type protein-coding 388-179 chr20 18720158 18720513 + 2 NA intron (NM_080820, intron 4 of 5) intron (NM_080820, intron 4 of 5) -21627 NR_109955 101929526 Hs.639402 NR_109955 ENSG00000233993 LOC101929526 - uncharacterized LOC101929526 ncRNA 232-20 chr1 193813450 193813584 + 2 NA Intergenic Intergenic 508772 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 168-19 chr11 100756782 100756898 + 2 NA intron (NM_001367945, intron 1 of 25) intron (NM_001367945, intron 1 of 25) -68885 NR_133571 100128386 Hs.635125 NR_133571 ENSG00000248027 LOC100128386 - uncharacterized LOC100128386 ncRNA 185-156 chr4 171745834 171745971 + 2 NA Intergenic Intergenic -67502 NM_001034845 442117 Hs.386236 NM_001034845 ENSG00000174473 GALNTL6 GALNACT20|GALNT17|GalNAc-T6L polypeptide N-acetylgalactosaminyltransferase like 6 protein-coding 368-455 chr8 90737599 90737908 + 2 NA Intergenic L1PREC2|LINE|L1 -54022 NM_022351 64168 Hs.719466 NM_022351 ENSG00000123119 NECAB1 EFCBP1|STIP-1 N-terminal EF-hand calcium binding protein 1 protein-coding 453-301 chr9 78103422 78103790 + 2 NA Intergenic Intergenic -71795 NM_002072 2776 Hs.269782 NM_002072 ENSG00000156052 GNAQ CMC1|G-ALPHA-q|GAQ|SWS G protein subunit alpha q protein-coding 396-199 chr21 19233561 19233950 + 2 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -473943 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 172-43 chr16 73756000 73756099 + 2 NA Intergenic Intergenic 369244 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 481-45 chr10 111928116 111928484 + 2 NA Intergenic MIR|SINE|MIR 255465 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 514-249 chr6 56073583 56073877 + 2 NA intron (NM_030820, intron 20 of 29) intron (NM_030820, intron 20 of 29) 17932 NM_001318753 81578 Hs.47629 NM_030820 ENSG00000124749 COL21A1 COLA1L|FP633 collagen type XXI alpha 1 chain protein-coding 605-24 chr13 59693692 59694102 + 2 NA intron (NM_001258366, intron 26 of 26) intron (NM_001258366, intron 26 of 26) -318821 NR_109838 100874195 Hs.664101 NR_046539 ENSG00000227528 DIAPH3-AS1 - DIAPH3 antisense RNA 1 ncRNA 340-309 chr20 12216427 12216681 + 2 NA Intergenic LTR16A1|LTR|ERVL 298661 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 252-203 chr2 102820482 102820689 + 2 NA Intergenic L2a|LINE|L2 58554 NM_144632 130827 Hs.436203 NM_144632 ENSG00000170417 TMEM182 - transmembrane protein 182 protein-coding 359-424 chr6 62186961 62187181 + 2 NA intron (NR_146874, intron 1 of 13) intron (NR_146874, intron 1 of 13) 99154 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 271-184 chr19 11040737 11040919 + 2 NA intron (NM_001128849, intron 30 of 35) AluJr|SINE|Alu -48534 NM_000527 3949 Hs.213289 NM_000527 ENSG00000130164 LDLR FH|FHC|LDLCQ2 low density lipoprotein receptor protein-coding 267-182 chr2 53618684 53618870 + 2 NA Intergenic L1M5|LINE|L1 -149006 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 304-40 chr10 16336439 16336656 + 2 NA Intergenic L1M3|LINE|L1 -100396 NM_001261836 9317 Hs.444321 NM_030664 ENSG00000165983 PTER HPHRP|RPR-1 phosphotriesterase related protein-coding 339-26 chr1 152876333 152876616 + 2 NA Intergenic Intergenic -1848 NM_030663 4184 Hs.111850 NM_030663 ENSG00000163206 SMCP HSMCSGEN1|MCS|MCSP sperm mitochondria associated cysteine rich protein protein-coding 204-253 chr6 118117812 118117954 + 2 NA intron (NM_001029858, intron 1 of 7) L1ME1|LINE|L1 31980 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 298-334 chr4 92956093 92956381 + 2 NA intron (NM_001286838, intron 2 of 14) L1MC1|LINE|L1 651838 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 274-274 chr3 187287839 187288049 + 2 NA intron (NM_139125, intron 1 of 10) L1ME4a|LINE|L1 -3328 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 351-397 chr5 137523757 137523966 + 2 NA Intergenic AluJr|SINE|Alu -24535 NM_004598 6695 Hs.596136 NM_004598 ENSG00000152377 SPOCK1 SPOCK|TESTICAN|TIC1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 protein-coding 729-77 chr8 98597719 98598196 + 2 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 170999 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 283-4 chr1 24217513 24217767 + 2 NA Intergenic Intergenic 17400 NR_027087 284632 Hs.638906 NR_027087 ENSG00000230023 LINC02800 - long intergenic non-protein coding RNA 2800 ncRNA 220-73 chr11 103421704 103421879 + 2 NA intron (NM_001377, intron 84 of 88) L1PA10|LINE|L1 312365 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 339-371 chr3 90114586 90114860 + 2 NA Intergenic L2b|LINE|L2 1007102 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 617-132 chr8 79232453 79232845 + 2 NA Intergenic L1PB4|LINE|L1 -99539 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 324-277 chr2 118036250 118036550 + 2 NA Intergenic L1PA10|LINE|L1 -22330 NM_019044 54520 Hs.107845 NM_019044 ENSG00000125633 CCDC93 - coiled-coil domain containing 93 protein-coding 464-131 chr2 151331696 151331955 + 2 NA Intergenic L1MD1|LINE|L1 -25767 NM_007115 7130 Hs.437322 NM_007115 ENSG00000123610 TNFAIP6 TSG-6|TSG6 TNF alpha induced protein 6 protein-coding 242-256 chr4 35036675 35036831 + 2 NA Intergenic L1MB1|LINE|L1 -767006 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 276-168 chr15 75968039 75968204 + 2 NA intron (NM_138573, intron 3 of 5) intron (NM_138573, intron 3 of 5) 44303 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 302-103 chr12 38982589 38982793 + 2 NA Intergenic Intergenic -77100 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 250-4 chr1 60887361 60887548 + 2 NA Intergenic Intergenic -61870 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 602-46 chr18 4800235 4800614 + 2 NA Intergenic AluJb|SINE|Alu -280758 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 330-393 chr4 164562682 164562885 + 2 NA Intergenic MIRb|SINE|MIR -179528 NM_001166373 55016 Hs.592804 NM_017923 ENSG00000145416 MARCH1 MARCH-I|RNF171 membrane associated ring-CH-type finger 1 protein-coding 452-133 chr2 119706033 119706387 + 2 NA intron (NR_148341, intron 14 of 16) AluSx|SINE|Alu 27009 NM_001105199 80775 Hs.439991 NM_030577 ENSG00000144120 TMEM177 - transmembrane protein 177 protein-coding 242-285 chr5 2269209 2269439 + 2 NA Intergenic Intergenic 42877 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 208-214 chr5 85955734 85955894 + 2 NA Intergenic Intergenic -326630 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 136-42 chr2 67291243 67291369 + 2 NA Intergenic Intergenic -75987 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 188-45 chr13 39614100 39614258 + 2 NA Intergenic Intergenic -10986 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 426-159 chr20 7052628 7052990 + 2 NA Intergenic L1ME3A|LINE|L1 201393 NR_110609 101929265 Hs.637730 NR_110609 ENSG00000228888 LINC01428 - long intergenic non-protein coding RNA 1428 ncRNA 749-95 chr8 100893661 100894190 + 2 NA Intergenic Intergenic 56646 NM_001135702 7534 Hs.492407 NM_003406 ENSG00000164924 YWHAZ 14-3-3-zeta|HEL-S-3|HEL-S-93|HEL4|KCIP-1|POPCHAS|YWHAD tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta protein-coding 428-312 chr9 9203984 9204344 + 2 NA intron (NM_002839, intron 9 of 45) intron (NM_002839, intron 9 of 45) 346146 NR_121600 101929407 Hs.649971 NR_121599 PTPRD-AS1 - PTPRD antisense RNA 1 ncRNA 319-174 chr16 26683615 26683859 + 2 NA Intergenic Intergenic -383190 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 343-247 chr2 79444308 79444479 + 2 NA Intergenic Intergenic 56451 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 114-8 chr11 72802107 72802164 + 2 NA Intergenic AluY|SINE|Alu -8430 NM_006645 10809 Hs.188606 NM_006645 ENSG00000214530 STARD10 CGI-52|NY-CO-28|PCTP2|SDCCAG28 StAR related lipid transfer domain containing 10 protein-coding 285-386 chr7 42968794 42968981 + 2 NA Intergenic L1MC3|LINE|L1 36511 NM_031903 64983 Hs.50252 NM_031903 ENSG00000106591 MRPL32 HSPC283|L32mt|MRP-L32|bMRP-59b mitochondrial ribosomal protein L32 protein-coding 421-288 chr7 138799459 138799785 + 2 NA intron (NM_001085429, intron 1 of 2) intron (NM_001085429, intron 1 of 2) -1426 NM_020632 50617 Hs.98967 NM_020632 ENSG00000105929 ATP6V0A4 A4|ATP6N1B|ATP6N2|RDRTA2|RTA1C|RTADR|STV1|VPH1|VPP2 ATPase H+ transporting V0 subunit a4 protein-coding 348-485 chr7 18407609 18407926 + 2 NA intron (NM_001321896, intron 1 of 12) intron (NM_001321896, intron 1 of 12) -87943 NM_001204146 9734 Hs.196054 NM_014707 ENSG00000048052 HDAC9 HD7|HD7b|HD9|HDAC|HDAC7|HDAC7B|HDAC9B|HDAC9FL|HDRP|MITR histone deacetylase 9 protein-coding 227-390 chr9 29122375 29122594 + 2 NA intron (NM_001354574, intron 1 of 5) intron (NM_001354574, intron 1 of 5) 89815 NM_001354575 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 352-246 chr2 100331519 100331791 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie -8922 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 519-205 chr6 163632543 163632980 + 2 NA Intergenic Intergenic 38723 NR_134620 102724152 Hs.738183 NR_134620 LOC102724152 - uncharacterized LOC102724152 ncRNA 241-328 chr6 49692051 49692260 + 2 NA TTS (NM_003296) TTS (NM_003296) 21388 NM_001142407 7180 Hs.2042 NM_003296 ENSG00000124490 CRISP2 CRISP-2|CT36|GAPDL5|TPX1|TSP1 cysteine rich secretory protein 2 protein-coding 349-7 chr1 29875217 29875428 + 2 NA Intergenic L1MDb|LINE|L1 162290 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 675-54 chr22 45133902 45134511 + 2 NA non-coding (NR_038957, exon 3 of 3) non-coding (NR_038957, exon 3 of 3) 18378 NR_038957 100506714 Hs.189902 NR_038956 NUP50-DT NUP50-AS1 NUP50 divergent transcript ncRNA 770-19 chr14 53332683 53333356 + 2 NA Intergenic L1MC1|LINE|L1 179665 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 316-102 chr11 60379001 60379186 + 2 NA intron (NM_021201, intron 1 of 6) intron (NM_021201, intron 1 of 6) 561 NM_206940 58475 Hs.530735 NM_021201 ENSG00000166927 MS4A7 4SPAN2|CD20L4|CFFM4|MS4A8 membrane spanning 4-domains A7 protein-coding 413-262 chr6 45245590 45245944 + 2 NA intron (NM_001350325, intron 2 of 10) L1MB4|LINE|L1 -47997 NR_030313 693171 NR_030313 ENSG00000207769 MIR586 MIRN586|hsa-mir-586 microRNA 586 ncRNA 415-47 chr11 55125282 55125660 + 2 NA Intergenic ALR/Alpha|Satellite|centr -136684 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 308-531 chr9 7224550 7224759 + 2 NA Intergenic MLT2F|LTR|ERVL 467304 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 416-175 chr2 95261693 95262036 + 2 NA Intergenic Intergenic -12585 NM_144707 150696 Hs.437376 NM_144707 ENSG00000155066 PROM2 PROML2 prominin 2 protein-coding 275-29 chr1 245900366 245900569 + 2 NA intron (NM_022743, intron 8 of 11) MLT1J|LTR|ERVL-MaLR 516945 NM_022743 64754 Hs.567571 NM_022743 ENSG00000185420 SMYD3 KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 SET and MYND domain containing 3 protein-coding 225-141 chr19 56688711 56688862 + 2 NA Intergenic Intergenic -17029 NM_001005850 90485 Hs.458438 NM_001005850 ENSG00000127903 ZNF835 BC37295_3 zinc finger protein 835 protein-coding 375-34 chr10 10629242 10629567 + 2 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 165510 NR_027082 207107 Hs.31562 NR_027082 ENSG00000225383 SFTA1P SFTPF surfactant associated 1, pseudogene pseudo 251-98 chr14 67443762 67443956 + 2 NA Intergenic Intergenic -1929 NR_049879 100847064 NR_049879 ENSG00000265993 MIR5694 - microRNA 5694 ncRNA 475-192 chr4 14930402 14930692 + 2 NA intron (NR_038857, intron 7 of 7) intron (NR_038857, intron 7 of 7) -42378 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 291-202 chr2 12198743 12198996 + 2 NA promoter-TSS (NR_037452) promoter-TSS (NR_037452) -261 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 346-98 chr12 29467206 29467399 + 2 NA intron (NM_001353179, intron 16 of 25) intron (NM_001353179, intron 16 of 25) 32391 NM_001353179 341350 Hs.674588 NM_183378 ENSG00000187950 OVCH1 OVCH ovochymase 1 protein-coding 373-197 chr2 86008107 86008452 + 2 NA Intergenic L1MA8|LINE|L1 97607 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 448-290 chr8 135708218 135708533 + 2 NA Intergenic Intergenic 250919 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 323-196 chr18 22346255 22346465 + 2 NA Intergenic Intergenic 71555 NM_172241 64693 Hs.406709 NM_022663 ENSG00000212710 CTAGE1 CT21.1|CT21.2|CTAGE|CTAGE-1|CTAGE-2 cutaneous T cell lymphoma-associated antigen 1 protein-coding 405-350 chr9 107890077 107890364 + 2 NA Intergenic MIR|SINE|MIR -400451 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 293-383 chr6 148712897 148713043 + 2 NA Intergenic HAL1M8|LINE|L1 -34060 NM_005715 10090 Hs.657370 NM_005715 ENSG00000111962 UST 2OST uronyl 2-sulfotransferase protein-coding 430-107 chr16 62389647 62390038 + 2 NA Intergenic Intergenic -353404 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 230-170 chr2 54998655 54998865 + 2 NA intron (NM_153828, intron 1 of 6) intron (NM_153828, intron 1 of 6) 11512 NM_007008 57142 Hs.637850 NM_007008 ENSG00000115310 RTN4 ASY|NI220/250|NOGO|NSP|NSP-CL|Nbla00271|Nbla10545|RTN-X|RTN4-A|RTN4-B1|RTN4-B2|RTN4-C reticulon 4 protein-coding 303-255 chr20 55586637 55586853 + 2 NA Intergenic LTR16E1|LTR|ERVL -159548 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 756-67 chr8 139796627 139797132 + 2 NA intron (NM_001160372, intron 21 of 22) L1MB7|LINE|L1 -93756 NM_001282534 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 412-206 chr3 26413514 26413728 + 2 NA Intergenic Intergenic -209185 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 460-104 chr17 10484245 10484657 + 2 NA intron (NR_125367, intron 2 of 10) L1MA9|LINE|L1 -14892 NM_017533 4622 Hs.711141 NM_017533 ENSG00000264424 MYH4 MYH2B|MyHC-2B|MyHC-IIb myosin heavy chain 4 protein-coding 535-224 chr7 32374807 32375210 + 2 NA intron (NM_001322059, intron 1 of 17) intron (NM_001322059, intron 1 of 17) 53216 NM_001322059 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 244-230 chr3 68195765 68195948 + 2 NA intron (NM_001252216, intron 2 of 4) intron (NM_001252216, intron 2 of 4) 191609 NM_213609 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 536-81 chr15 60060229 60060642 + 2 NA Intergenic MLT2B2|LTR|ERVL 56124 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 277-28 chr1 198166893 198167147 + 2 NA intron (NM_133494, intron 1 of 9) MLT1C|LTR|ERVL-MaLR 10022 NM_133494 140609 Hs.24119 NM_133494 ENSG00000151414 NEK7 - NIMA related kinase 7 protein-coding 261-117 chr15 34730928 34731154 + 2 NA Intergenic Intergenic 23957 NM_020660 57369 Hs.283816 NM_020660 ENSG00000159248 GJD2 CX36|GJA9 gap junction protein delta 2 protein-coding 331-532 chr8 86962891 86963134 + 2 NA intron (NM_173538, intron 4 of 10) MER52-int|LTR|ERV1 96597 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 505-199 chr3 139564743 139565121 + 2 NA intron (NM_001200047, intron 3 of 3) L1ME4a|LINE|L1 -25190 NM_001130992 5947 Hs.529571 NM_002899 ENSG00000114115 RBP1 CRABP-I|CRBP|CRBP1|CRBPI|RBPC retinol binding protein 1 protein-coding 278-446 chr9 8264534 8264689 + 2 NA Intergenic LTR83|LTR|ERVL -464833 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 383-201 chr2 152080096 152080476 + 2 NA intron (NM_000726, intron 2 of 13) AluSx3|SINE|Alu 18477 NM_001005746 785 Hs.120725 NM_000726 ENSG00000182389 CACNB4 CAB4|CACNLB4|EA5|EIG9|EJM|EJM4|EJM6 calcium voltage-gated channel auxiliary subunit beta 4 protein-coding 200-83 chr15 56221112 56221273 + 2 NA intron (NM_001370561, intron 4 of 11) L1PA15|LINE|L1 22687 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 608-39 chr14 36724407 36724904 + 2 NA intron (NM_001171170, intron 6 of 10) intron (NM_001171170, intron 6 of 10) 67087 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 545-122 chr2 172132924 172133373 + 2 NA Intergenic Intergenic 30142 NR_126376 104326193 Hs.600690 NR_126376 ENSG00000236651 DLX2-DT DLX2-AS1|TCONS_00003049 DLX2 divergent transcript ncRNA 253-101 chr12 41885036 41885174 + 2 NA Intergenic Intergenic 120916 NR_135041 101927038 Hs.98588 NR_135040 ENSG00000257784 LINC02400 - long intergenic non-protein coding RNA 2400 ncRNA 303-442 chr8 27700815 27701114 + 2 NA promoter-TSS (NR_037417) promoter-TSS (NR_037417) -713 NR_037417 100500858 NR_037417 ENSG00000284351 MIR3622A mir-3622a microRNA 3622a ncRNA 299-206 chr2 69277248 69277414 + 2 NA Intergenic HAL1|LINE|L1 109896 NM_002056 2673 Hs.580300 NM_002056 ENSG00000198380 GFPT1 CMS12|CMSTA1|GFA|GFAT|GFAT 1|GFAT1|GFAT1m|GFPT|GFPT1L|MSLG glutamine--fructose-6-phosphate transaminase 1 protein-coding 234-201 chr2 208781420 208781621 + 2 NA intron (NR_136588, intron 3 of 5) intron (NR_136588, intron 3 of 5) 238878 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 220-257 chr4 62534458 62534613 + 2 NA Intergenic L2|LINE|L2 -372770 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 278-110 chr14 54157959 54158221 + 2 NA Intergenic L2c|LINE|L2 -201199 NM_130850 652 Hs.68879 NM_001202 ENSG00000125378 BMP4 BMP2B|BMP2B1|MCOPS6|OFC11|ZYME bone morphogenetic protein 4 protein-coding 294-334 chr4 59767506 59767720 + 2 NA Intergenic Intergenic 754040 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 412-120 chr17 52006511 52006881 + 2 NA intron (NM_001082533, intron 3 of 9) L1ME3Cz|LINE|L1 152018 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 364-395 chr6 146606510 146606757 + 2 NA intron (NM_024694, intron 1 of 35) L1PA13|LINE|L1 7661 NM_024694 79747 Hs.720870 NM_024694 ENSG00000118492 ADGB C6orf103|CAPN16 androglobin protein-coding 254-364 chr7 4498160 4498356 + 2 NA Intergenic L1ME3Cz|LINE|L1 -184037 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 621-36 chr14 88070380 88070929 + 2 NA intron (NR_046094, intron 2 of 3) L1MC1|LINE|L1 -44342 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 321-86 chr10 133503203 133503454 + 2 NA Intergenic Intergenic -24035 NM_000773 1571 Hs.12907 NM_000773 ENSG00000130649 CYP2E1 CPE1|CYP2E|P450-J|P450C2E cytochrome P450 family 2 subfamily E member 1 protein-coding 532-112 chr2 11821751 11822172 + 2 NA intron (NM_001349203, intron 20 of 20) intron (NM_001349203, intron 20 of 20) 15025 NR_036226 100422996 NR_036226 ENSG00000265172 MIR4262 - microRNA 4262 ncRNA 217-236 chr3 150016969 150017149 + 2 NA Intergenic Intergenic -33693 NM_001079809 653659 Hs.652908 NM_001079809 TMEM183B C1ORF37DUP|C1orf37-DUP transmembrane protein 183B protein-coding 299-260 chr20 55919753 55919986 + 2 NA Intergenic Intergenic 85650 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 132-45 chr20 38508828 38508954 + 2 NA intron (NM_001282917, intron 5 of 29) L1MA5A|LINE|L1 -7672 NR_039605 100616190 NR_039605 ENSG00000275453 MIR548O2 - microRNA 548o-2 ncRNA 350-163 chr16 60633144 60633386 + 2 NA Intergenic MER51A|LTR|ERV1 -273472 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 240-120 chr13 63023321 63023479 + 2 NA Intergenic Intergenic -216041 NR_120403 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 451-213 chr7 41352194 41352532 + 2 NA Intergenic Intergenic 250759 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 249-352 chr6 50095700 50095935 + 2 NA Intergenic Intergenic -45888 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 113-47 chr6 152944482 152944582 + 2 NA Intergenic L1M5|LINE|L1 38509 NM_012177 26271 Hs.520506 NM_012177 ENSG00000112029 FBXO5 EMI1|FBX5|Fbxo31 F-box protein 5 protein-coding 359-218 chr2 10520736 10520975 + 2 NA Intergenic Intergenic 71127 NR_110597 101929715 Hs.634550 NR_110597 ODC1-DT lncRNA-MIF ODC1 divergent transcript ncRNA 464-40 chr12 5116368 5116667 + 2 NA Intergenic L1PA2|LINE|L1 72638 NM_002234 3741 Hs.150208 NM_002234 ENSG00000130037 KCNA5 ATFB7|HCK1|HK2|HPCN1|KV1.5|PCN1 potassium voltage-gated channel subfamily A member 5 protein-coding 259-4 chr1 39908081 39908270 + 2 NA Intergenic MER77B|LTR|ERVL -6258 NM_005376 4610 Hs.437922 NM_005376 ENSG00000116990 MYCL L-Myc|LMYC|MYCL1|bHLHe38 MYCL proto-oncogene, bHLH transcription factor protein-coding 543-237 chr7 114119526 114119924 + 2 NA intron (NR_033766, intron 1 of 19) Charlie20a|DNA|hAT-Charlie 33398 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 299-204 chr2 65192681 65192932 + 2 NA Intergenic L1MB8|LINE|L1 -34889 NM_001005386 10097 Hs.643727 NM_005722 ENSG00000138071 ACTR2 ARP2 actin related protein 2 protein-coding 290-172 chr17 52723646 52723891 + 2 NA Intergenic LTR89|LTR|ERVL? -138353 NR_146899 105371831 Hs.97791 NR_146899 ENSG00000226364 LINC02089 - long intergenic non-protein coding RNA 2089 ncRNA 683-97 chr9 15074017 15074459 + 2 NA Intergenic L1MEf|LINE|L1 80911 NR_003920 389705 Hs.431257 NR_003920 LOC389705 - histone PARylation factor 1 pseudogene pseudo 327-122 chr12 90559681 90559884 + 2 NA Intergenic L2a|LINE|L2 266464 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 266-15 chr1 152007913 152008150 + 2 NA Intergenic L1MC2|LINE|L1 -10247 NR_103561 441908 Hs.656557 NR_103561 NBPF18P - NBPF member 18, pseudogene pseudo 250-348 chr5 81016873 81017023 + 2 NA intron (NM_006909, intron 1 of 26) (ACA)n|Simple_repeat|Simple_repeat -56041 NR_105015 102524628 Hs.737159 NR_105015 ENSG00000251450 RASGRF2-AS1 - RASGRF2 antisense RNA 1 ncRNA 594-94 chr3 128328659 128329094 + 2 NA intron (NM_021937, intron 4 of 6) intron (NM_021937, intron 4 of 6) -134718 NR_037890 285224 Hs.683815 NR_037890 ENSG00000242049 DNAJB8-AS1 - DNAJB8 antisense RNA 1 ncRNA 335-323 chr22 21616175 21616437 + 2 NA intron (NR_028436, intron 4 of 4) L1MB7|LINE|L1 13716 NR_163923 133-19 chr12 115857145 115857241 + 2 NA Intergenic L1ME4b|LINE|L1 291461 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 506-188 chr3 133705413 133705781 + 2 NA intron (NM_001354703, intron 3 of 22) intron (NM_001354703, intron 3 of 22) -40796 NM_001354704 7018 Hs.518267 NM_001063 ENSG00000091513 TF HEL-S-71p|PRO1557|PRO2086|TFQTL1 transferrin protein-coding 272-454 chr8 105034918 105035112 + 2 NA Intergenic L1ME1|LINE|L1 -283423 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 381-253 chr3 73578519 73578796 + 2 NA intron (NM_015009, intron 3 of 9) intron (NM_015009, intron 3 of 9) -9142 NM_001303139 23024 Hs.660347 NM_015009 ENSG00000121440 PDZRN3 LNX3|SEMACAP3|SEMCAP3 PDZ domain containing ring finger 3 protein-coding 126-54 chr5 86012104 86012178 + 2 NA Intergenic Intergenic -270303 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 916-25 chr5 44162148 44162872 + 2 NA Intergenic Intergenic -226222 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 473-209 chr5 25253112 25253392 + 2 NA intron (NR_136209, intron 1 of 3) L1PA13|LINE|L1 62299 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 338-526 chr8 31314056 31314242 + 2 NA Intergenic L2a|LINE|L2 -280793 NM_001015508 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 566-14 chr10 67163692 67164076 + 2 NA intron (NM_001127384, intron 7 of 17) L1MD2|LINE|L1 151618 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 522-79 chr14 56127741 56128133 + 2 NA intron (NM_021255, intron 1 of 5) intron (NM_021255, intron 1 of 5) 9526 NM_021255 57161 Hs.657926 NM_021255 ENSG00000139946 PELI2 - pellino E3 ubiquitin protein ligase family member 2 protein-coding 434-319 chr9 107189801 107190053 + 2 NA Intergenic Intergenic -86939 NR_126029 340512 Hs.432529 NR_126029 ENSG00000230782 LOC340512 - uncharacterized LOC340512 ncRNA 319-522 chr8 47252632 47252926 + 2 NA Intergenic L1MA9|LINE|L1 -8099 NM_001352934 23514 Hs.381058 NM_001080394 ENSG00000164808 SPIDR KIAA0146 scaffold protein involved in DNA repair protein-coding 255-307 chr4 167637649 167637855 + 2 NA Intergenic L1MC1|LINE|L1 -403162 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 372-271 chr2 212798924 212799134 + 2 NA intron (NR_131941, intron 1 of 4) L1M5|LINE|L1 3698 NR_131941 102725079 Hs.176124 NR_131941 ENSG00000234308 LINC01878 - long intergenic non-protein coding RNA 1878 ncRNA 292-374 chr6 36179309 36179491 + 2 NA Intergenic L1M5|LINE|L1 -17344 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 493-285 chr7 109570730 109571066 + 2 NA Intergenic Intergenic 389315 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 364-356 chr5 112351173 112351509 + 2 NA intron (NM_001347887, intron 1 of 23) L1M2|LINE|L1 67936 NR_144931 64097 Hs.584954 NM_022140 ENSG00000129595 EPB41L4A EPB41L4|NBL4 erythrocyte membrane protein band 4.1 like 4A protein-coding 485-204 chr4 45383192 45383565 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -656744 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 324-200 chr16 49293734 49293906 + 2 NA Intergenic Intergenic -11982 NM_004352 869 Hs.458423 NM_004352 ENSG00000102924 CBLN1 - cerebellin 1 precursor protein-coding 388-171 chr2 164022758 164022970 + 2 NA Intergenic Intergenic -286856 NM_018086 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 341-486 chr7 16234278 16234577 + 2 NA intron (NM_001101426, intron 8 of 9) intron (NM_001101426, intron 8 of 9) 23941 NR_038947 100506025 Hs.649029 NR_038946 ENSG00000229688 CRPPA-AS1 ISPD-AS1 CRPPA antisense RNA 1 ncRNA 692-67 chr3 156186297 156186813 + 2 NA intron (NM_003471, intron 1 of 13) intron (NM_003471, intron 1 of 13) 41328 NR_046617 100874083 Hs.603823 NR_046617 ENSG00000240596 KCNAB1-AS2 - KCNAB1 antisense RNA 2 ncRNA 238-369 chr8 10388264 10388404 + 2 NA intron (NM_001199729, intron 6 of 6) MER34C_|LTR|ERV1 -86231 NR_120604 101929191 Hs.595262 NR_120604 ENSG00000253641 LINCR-0001 - uncharacterized LINCR-0001 ncRNA 249-325 chr5 22440270 22440443 + 2 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -226506 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 730-58 chr5 45802059 45802491 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -105895 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 407-358 chrX 94355932 94356286 + 2 NA Intergenic L1MC1|LINE|L1 681903 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 185-114 chr2 200808719 200808868 + 2 NA intron (NR_110275, intron 1 of 3) intron (NR_110275, intron 1 of 3) -2753 NM_014670 9689 Hs.355983 NM_014670 ENSG00000082153 BZW1 BZAP45|Nbla10236 basic leucine zipper and W2 domains 1 protein-coding 560-75 chr19 9466954 9467371 + 2 NA exon (NM_001351678, exon 10 of 10) exon (NM_001351678, exon 10 of 10) 31454 NM_152476 147741 Hs.631613 NM_152476 ENSG00000198028 ZNF560 - zinc finger protein 560 protein-coding 275-399 chrX 94590046 94590266 + 2 NA Intergenic Intergenic 473070 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 166-81 chr4 8824370 8824475 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 47417 NM_001306142 3166 Hs.104134 NM_018942 ENSG00000215612 HMX1 H6|NKX5-3 H6 family homeobox 1 protein-coding 531-63 chr14 69958918 69959343 + 2 NA intron (NM_001034852, intron 3 of 11) L1ME3C|LINE|L1 -19003 NR_145786 109623479 NR_145786 SNORD169 - small nucleolar RNA, C/D box 169 snoRNA 217-40 chr10 53006877 53007005 + 2 NA Intergenic LTR24C|LTR|ERV1 -235241 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 579-170 chr8 111739483 111739964 + 2 NA Intergenic L1ME1|LINE|L1 363084 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 175-33 chr11 42418952 42419110 + 2 NA Intergenic MER63D|DNA|hAT-Blackjack -165341 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 391-340 chr8 51353849 51354098 + 2 NA intron (NM_144651, intron 19 of 22) intron (NM_144651, intron 19 of 22) 455472 NM_144651 137902 Hs.444882 NM_144651 ENSG00000147485 PXDNL PMR1|PRM1|VPO2 peroxidasin like protein-coding 299-215 chr2 112321487 112321781 + 2 NA intron (NM_198581, intron 7 of 11) L1MB1|LINE|L1 46037 NM_198581 376940 Hs.190477 NM_198581 ENSG00000188177 ZC3H6 ZC3HDC6 zinc finger CCCH-type containing 6 protein-coding 342-122 chr12 115799830 115800061 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 348709 NR_030351 693205 NR_030351 ENSG00000207967 MIR620 MIRN620|hsa-mir-620 microRNA 620 ncRNA 255-172 chr18 68751329 68751533 + 2 NA intron (NM_001093729, intron 3 of 9) Tigger17a|DNA|TcMar-Tigger 36215 NM_001093729 79839 Hs.280781 NM_024781 ENSG00000150636 CCDC102B ACY1L|AN|C18orf14|HsT1731 coiled-coil domain containing 102B protein-coding 279-364 chr6 63993334 63993546 + 2 NA intron (NM_001292009, intron 34 of 43) L1M4c|LINE|L1 186604 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 590-64 chr17 77740217 77740629 + 2 NA Intergenic L1M4|LINE|L1 -11864 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 746-24 chr14 79223376 79223878 + 2 NA intron (NR_073547, intron 14 of 20) intron (NR_073547, intron 14 of 20) 23645 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 288-186 chr2 57847976 57848152 + 2 NA Intergenic L1M3e|LINE|L1 -59587 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 222-86 chr12 74704883 74705030 + 2 NA Intergenic Intergenic 167121 NM_001136262 552889 Hs.744849 NM_001136262 ENSG00000253719 ATXN7L3B lnc-SCA7 ataxin 7 like 3B protein-coding 351-338 chr4 33912663 33912910 + 2 NA intron (NR_125902, intron 4 of 4) MLT1O|LTR|ERVL-MaLR 127107 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 345-21 chr1 147824033 147824348 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -50828 NM_005266 2702 Hs.447968 NM_005266 ENSG00000265107 GJA5 ATFB11|CX40 gap junction protein alpha 5 protein-coding 248-443 chrX 78683400 78683562 + 2 NA Intergenic L1PA17|LINE|L1 -24153 NM_152694 203430 Hs.134873 NM_152694 ENSG00000179300 RTL3 Mar3|Mart3|SIRH9|ZCCHC5|ZHC5 retrotransposon Gag like 3 protein-coding 301-469 chr8 139998759 139998974 + 2 NA intron (NM_001160372, intron 18 of 22) L1MEf|LINE|L1 101669 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 499-90 chr17 69074801 69075151 + 2 NA Intergenic L1PA16|LINE|L1 -14049 NM_080283 10350 Hs.131686 NM_080283 ENSG00000154258 ABCA9 EST640918 ATP binding cassette subfamily A member 9 protein-coding 432-151 chr2 225614853 225615255 + 2 NA intron (NM_001371273, intron 5 of 7) MLT1J2|LTR|ERVL-MaLR 214168 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 218-61 chr11 115783789 115783963 + 2 NA Intergenic LTR104_Mam|LTR|Gypsy -23676 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 143-56 chr3 168830211 168830319 + 2 NA non-coding (NR_021485, exon 16 of 16) non-coding (NR_021485, exon 16 of 16) -71680 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 140-42 chr2 204929971 204930048 + 2 NA intron (NM_205863, intron 2 of 21) intron (NM_205863, intron 2 of 21) 384534 NM_152526 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 367-367 chr5 108162405 108162681 + 2 NA intron (NM_001163315, intron 6 of 8) intron (NM_001163315, intron 6 of 8) 219555 NM_001163315 64839 Hs.657225 NM_022824 ENSG00000145743 FBXL17 FBXO13|Fbl17|Fbx13 F-box and leucine rich repeat protein 17 protein-coding 239-164 chr2 35271166 35271339 + 2 NA Intergenic L1MA6|LINE|L1 -200153 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 310-134 chr14 53824588 53824787 + 2 NA Intergenic L2a|LINE|L2 123797 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 368-372 chr5 117255054 117255361 + 2 NA Intergenic Intergenic -160305 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 444-45 chr12 13768396 13768735 + 2 NA intron (NM_000834, intron 2 of 12) intron (NM_000834, intron 2 of 12) 211791 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 293-364 chr6 28500368 28500564 + 2 NA Intergenic Intergenic 15327 NM_182701 257202 Hs.448570 NM_182701 ENSG00000198704 GPX6 GPX5p|GPXP3|GPx-6|GSHPx-6|dJ1186N24|dJ1186N24.1 glutathione peroxidase 6 protein-coding 446-64 chr11 63396414 63396704 + 2 NA intron (NM_080866, intron 6 of 9) L1PBa1|LINE|L1 26774 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 265-19 chr1 182264767 182264929 + 2 NA intron (NR_104175, intron 2 of 2) intron (NR_104175, intron 2 of 2) 49213 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 393-278 chr5 68122141 68122510 + 2 NA Intergenic L1PA13|LINE|L1 -67551 NR_105003 102467655 Hs.544102 NR_105003 ENSG00000253787 LINC02219 - long intergenic non-protein coding RNA 2219 ncRNA 214-291 chr6 169561398 169561525 + 2 NA intron (NR_146875, intron 19 of 20) L1MEc|LINE|L1 140568 NM_001350623 253769 Hs.131903 NM_182552 ENSG00000184465 WDR27 - WD repeat domain 27 protein-coding 333-81 chr11 41614896 41615093 + 2 NA Intergenic L2a|LINE|L2 -99574 NR_120584 102723644 Hs.564283 NR_120584 ENSG00000255171 LINC01499 - long intergenic non-protein coding RNA 1499 ncRNA 302-241 chr2 192935687 192935910 + 2 NA Intergenic L1MA3|LINE|L1 185953 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 741-50 chr5 22411399 22411828 + 2 NA intron (NM_004061, intron 2 of 14) intron (NM_004061, intron 2 of 14) -197763 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 276-347 chr4 96348199 96348381 + 2 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 37587 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 364-150 chr16 6979520 6979787 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 205844 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 322-278 chr2 178019318 178019497 + 2 NA intron (NM_001077197, intron 2 of 20) intron (NM_001077197, intron 2 of 20) 53370 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 387-124 chr15 96745515 96745776 + 2 NA Intergenic Intergenic 36009 NR_102754 100652749 Hs.303588 NR_102753 ENSG00000259282 SPATA8-AS1 - SPATA8 antisense RNA 1 (head to head) ncRNA 368-447 chr8 59101219 59101424 + 2 NA intron (NM_014729, intron 1 of 8) L2a|LINE|L2 17826 NM_014729 9760 Hs.491805 NM_014729 ENSG00000198846 TOX TOX1 thymocyte selection associated high mobility group box protein-coding 289-138 chr14 49161433 49161672 + 2 NA Intergenic Intergenic 424828 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 247-238 chr20 58975329 58975515 + 2 NA Intergenic L1M4|LINE|L1 -5834 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 446-9 chr1 63852649 63853063 + 2 NA intron (NM_005012, intron 1 of 8) intron (NM_005012, intron 1 of 8) 78839 NM_001083592 4919 Hs.128753 NM_005012 ENSG00000185483 ROR1 NTRKR1|dJ537F10.1 receptor tyrosine kinase like orphan receptor 1 protein-coding 420-161 chr2 226068483 226068850 + 2 NA Intergenic L2c|LINE|L2 -74128 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 585-148 chr7 26104999 26105481 + 2 NA Intergenic Intergenic -46958 NM_004289 9603 Hs.404741 NM_004289 ENSG00000050344 NFE2L3 NRF3 nuclear factor, erythroid 2 like 3 protein-coding 197-153 chr4 90779606 90779790 + 2 NA intron (NM_001145065, intron 7 of 10) intron (NM_001145065, intron 7 of 10) 544667 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 358-97 chr12 96344681 96344881 + 2 NA intron (NM_002595, intron 1 of 16) L1MB4|LINE|L1 55658 NM_002595 5128 Hs.506415 NM_002595 ENSG00000059758 CDK17 PCTAIRE2|PCTK2 cyclin dependent kinase 17 protein-coding 564-79 chr18 2071279 2071695 + 2 NA Intergenic Intergenic 500018 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 572-15 chr10 41731397 41731823 + 2 NA Intergenic ALR/Alpha|Satellite|centr 636435 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 488-271 chr8 109166046 109166394 + 2 NA Intergenic L1MC3|LINE|L1 79592 NM_003301 7201 Hs.3022 NM_003301 ENSG00000174417 TRHR TRH-R thyrotropin releasing hormone receptor protein-coding 269-382 chr7 45621471 45621625 + 2 NA intron (NM_001281768, intron 4 of 9) intron (NM_001281768, intron 4 of 9) 47180 NM_021116 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 666-39 chr17 61178662 61179186 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 188780 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 487-50 chr11 2647005 2647447 + 2 NA non-coding (NR_002728, exon 1 of 1) non-coding (NR_002728, exon 1 of 1) 52772 NR_002728 10984 Hs.604823 NR_002728 ENSG00000269821 KCNQ1OT1 KCNQ1-AS2|KCNQ10T1|Kncq1|KvDMR1|KvLQT1-AS|LIT1|NCRNA00012 KCNQ1 opposite strand/antisense transcript 1 ncRNA 218-63 chr12 11791742 11791895 + 2 NA intron (NM_001987, intron 2 of 7) MER5B|DNA|hAT-Charlie 141964 NM_001987 2120 Hs.504765 NM_001987 ENSG00000139083 ETV6 TEL|TEL/ABL|THC5 ETS variant 6 protein-coding 338-495 chr7 25585334 25585522 + 2 NA Intergenic MIR|SINE|MIR 77712 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 289-13 chr1 99310717 99310998 + 2 NA Intergenic Intergenic 46565 NM_001166252 9890 Hs.13245 NM_014839 ENSG00000117600 PLPPR4 LPPR4|LPR4|PHP1|PRG-1|PRG1 phospholipid phosphatase related 4 protein-coding 442-203 chr3 194524867 194525228 + 2 NA Intergenic Intergenic 37907 NR_033929 401106 Hs.407087 NR_033929 LINC00884 - long intergenic non-protein coding RNA 884 ncRNA 386-187 chr2 163305547 163305888 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 430291 NM_001321825 55137 Hs.593650 NM_018086 ENSG00000182263 FIGN - fidgetin, microtubule severing factor protein-coding 327-333 chr3 82444564 82444820 + 2 NA intron (NR_147146, intron 4 of 8) intron (NR_147146, intron 4 of 8) 458550 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 474-13 chr1 152277920 152278324 + 2 NA Intergenic L1PB1|LINE|L1 -35337 NR_103778 339400 Hs.23783 NR_103778 ENSG00000237975 FLG-AS1 - FLG antisense RNA 1 ncRNA 122-9 chr11 93832263 93832367 + 2 NA intron (NM_001144871, intron 1 of 3) L1ME4b|LINE|L1 18303 NM_001144871 387804 Hs.512252 NM_001144871 ENSG00000214376 VSTM5 C11orf90 V-set and transmembrane domain containing 5 protein-coding 237-341 chr7 8427877 8428061 + 2 NA Intergenic Intergenic -5640 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 321-415 chr4 58787519 58787709 + 2 NA Intergenic Intergenic -196668 NR_133941 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 626-39 chr14 76616970 76617462 + 2 NA Intergenic L1MEf|LINE|L1 -144252 NM_014909 22846 Hs.525479 NM_014909 ENSG00000071246 VASH1 KIAA1036|TTCP 1 vasohibin 1 protein-coding 465-120 chr19 37835241 37835688 + 2 NA intron (NR_040015, intron 3 of 5) intron (NR_040015, intron 3 of 5) 18053 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 315-269 chr2 236928839 236929025 + 2 NA Intergenic LTR73|LTR|ERV1 127235 NR_135202 93463 Hs.652810 NR_135202 ENSG00000124835 LOC93463 - uncharacterized LOC93463 ncRNA 323-257 chr2 84801913 84802125 + 2 NA intron (NM_001370, intron 70 of 76) L1P4d|LINE|L1 79065 NM_001080824 129293 Hs.469134 NM_001080824 ENSG00000186854 TRABD2A C2orf89|TIKI1 TraB domain containing 2A protein-coding 210-73 chr14 53031231 53031377 + 2 NA Intergenic L1ME4b|LINE|L1 -80207 NM_001134999 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 625-43 chr19 52365697 52366140 + 2 NA exon (NM_001161426, exon 6 of 6) exon (NM_001161426, exon 6 of 6) -4005 NM_001145434 400713 Hs.502314 NM_001145434 ENSG00000221923 ZNF880 - zinc finger protein 880 protein-coding 219-41 chr11 6672802 6672993 + 2 NA Intergenic L2c|LINE|L2 10443 NM_022061 63875 Hs.523456 NM_022061 ENSG00000158042 MRPL17 L17mt|LIP2|MRP-L17|MRP-L26|RPL17L|RPML26 mitochondrial ribosomal protein L17 protein-coding 209-28 chr1 248228406 248228596 + 2 NA Intergenic L1PA15|LINE|L1 -10428 NM_017504 26245 Hs.381309 NM_017504 ENSG00000171180 OR2M4 HSHTPCRX18|HTPCRX18|OR1-55|OST710|TPCR100 olfactory receptor family 2 subfamily M member 4 protein-coding 385-300 chr5 75328150 75328487 + 2 NA Intergenic Intergenic -8850 NM_001364187 3156 Hs.628096 NM_000859 ENSG00000113161 HMGCR LDLCQ3 3-hydroxy-3-methylglutaryl-CoA reductase protein-coding 420-216 chr4 179627956 179628297 + 2 NA Intergenic L2|LINE|L2 1531023 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 290-103 chr12 28915221 28915403 + 2 NA Intergenic L1PA16|LINE|L1 -233966 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 183-89 chr3 18276246 18276361 + 2 NA Intergenic Intergenic 149036 NM_001195470 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 314-627 chrX 124908609 124908816 + 2 NA intron (NM_014253, intron 1 of 30) intron (NM_014253, intron 1 of 30) 55105 NM_001163278 10178 Hs.23796 NM_014253 ENSG00000009694 TENM1 ODZ1|ODZ3|TEN-M1|TNM|TNM1|ten-1 teneurin transmembrane protein 1 protein-coding 573-212 chr9 92173911 92174358 + 2 NA Intergenic L1MCa|LINE|L1 17022 NM_001350291 138652 Hs.742918 NM_001350291 PRSS47 - serine protease 47 protein-coding 194-115 chr3 18966605 18966795 + 2 NA Intergenic Intergenic -181810 NM_144633 131096 Hs.475656 NM_144633 ENSG00000183960 KCNH8 ELK|ELK1|Kv12.1|elk3 potassium voltage-gated channel subfamily H member 8 protein-coding 335-490 chr7 12245218 12245516 + 2 NA Intergenic AluJb|SINE|Alu 34073 NM_018374 54664 Hs.396358 NM_018374 ENSG00000106460 TMEM106B HLD16 transmembrane protein 106B protein-coding 446-215 chr4 55836526 55836929 + 2 NA intron (NM_001351574, intron 2 of 2) intron (NM_001351574, intron 2 of 2) 16724 NM_001351575 644145 Hs.570825 NM_001351574 ENSG00000250821 EXOC1L - exocyst complex component 1 like protein-coding 474-45 chr11 28173593 28173911 + 2 NA intron (NM_001113528, intron 3 of 6) L1MC3|LINE|L1 65364 NM_001113528 196074 Hs.243326 NM_152636 ENSG00000169519 METTL15 METT5D1 methyltransferase like 15 protein-coding 433-153 chr20 32145576 32145918 + 2 NA intron (NM_001363731, intron 8 of 17) L2a|LINE|L2 36019 NM_001363731 9777 Hs.654665 NM_014742 ENSG00000101337 TM9SF4 dJ836N17.2 transmembrane 9 superfamily member 4 protein-coding 303-178 chr18 64910450 64910742 + 2 NA Intergenic Intergenic -650541 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 127-28 chr14 40241978 40242060 + 2 NA Intergenic Intergenic -712692 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 668-6 chr1 212375320 212375719 + 2 NA intron (NM_001198862, intron 7 of 8) intron (NM_001198862, intron 7 of 8) 22701 NR_004389 692157 Hs.707958 NR_004389 ENSG00000201544 SNORA16B U98b small nucleolar RNA, H/ACA box 16B snoRNA 632-31 chr15 76003788 76004269 + 2 NA intron (NM_138573, intron 3 of 5) L1M4c|LINE|L1 8396 NM_138573 145957 Hs.732438 NM_138573 ENSG00000169752 NRG4 HRG4 neuregulin 4 protein-coding 249-322 chr5 9844734 9844898 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -9561 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 145-86 chr8 73489287 73489386 + 2 NA intron (NM_001164383, intron 8 of 9) intron (NM_001164383, intron 8 of 9) 69262 NR_038406 100128126 Hs.679921 NR_038406 ENSG00000253302 STAU2-AS1 - STAU2 antisense RNA 1 ncRNA 312-337 chr3 99031446 99031700 + 2 NA Intergenic L1M3f|LINE|L1 -129878 NM_080927 131566 Hs.203691 NM_080927 ENSG00000057019 DCBLD2 CLCP1|ESDN discoidin, CUB and LCCL domain containing 2 protein-coding 277-198 chr2 77736168 77736331 + 2 NA Intergenic Intergenic -179685 NR_110286 101927926 Hs.149042 NR_110286 ENSG00000233605 LINC01851 - long intergenic non-protein coding RNA 1851 ncRNA 448-97 chr17 61985953 61986311 + 2 NA intron (NM_005121, intron 12 of 29) intron (NM_005121, intron 12 of 29) -58150 NM_001330417 57508 Hs.279646 NM_020748 ENSG00000108506 INTS2 INT2|KIAA1287 integrator complex subunit 2 protein-coding 420-146 chr2 114809253 114809521 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 24161 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 337-346 chr3 34533177 34533381 + 2 NA Intergenic Intergenic 734649 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 351-492 chr8 105215058 105215307 + 2 NA Intergenic LTR33|LTR|ERVL -103256 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 266-330 chr5 52345405 52345666 + 2 NA Intergenic AluSp|SINE|Alu 337504 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 326-182 chr16 11866015 11866315 + 2 NA Intergenic Intergenic -14623 NM_015659 26156 Hs.401842 NM_015659 ENSG00000171490 RSL1D1 CSIG|L12|PBK1|UTP30 ribosomal L1 domain containing 1 protein-coding 354-15 chr1 88431564 88431761 + 2 NA Intergenic Intergenic -252482 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 418-91 chr16 83244945 83245188 + 2 NA intron (NM_001220489, intron 4 of 12) MER68|LTR|ERVL -254768 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 380-266 chr3 191045079 191045378 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -154013 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 271-287 chr3 193648286 193648528 + 2 NA intron (NM_130831, intron 17 of 27) intron (NM_130831, intron 17 of 27) -21075 NR_046634 100873941 Hs.679364 NR_046634 ENSG00000224855 OPA1-AS1 - OPA1 antisense RNA 1 ncRNA 317-226 chr2 58457537 58457780 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -63095 NR_033873 400955 Hs.503210 NR_033873 ENSG00000233723 LINC01122 - long intergenic non-protein coding RNA 1122 ncRNA 266-337 chr5 86367886 86368126 + 2 NA Intergenic Intergenic 85562 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 309-456 chr5 129644924 129645152 + 2 NA intron (NM_133638, intron 11 of 22) intron (NM_133638, intron 11 of 22) -103056 NM_001257308 100127206 Hs.582534 NM_001257308 ENSG00000186367 MINAR2 KIAA1024L membrane integral NOTCH2 associated receptor 2 protein-coding 503-173 chr20 49549509 49549919 + 2 NA intron (NM_000961, intron 2 of 9) intron (NM_000961, intron 2 of 9) 18423 NM_000961 5740 Hs.302085 NM_000961 ENSG00000124212 PTGIS CYP8|CYP8A1|PGIS|PTGI prostaglandin I2 synthase protein-coding 209-184 chr22 29174237 29174372 + 2 NA Intergenic FLAM_A|SINE|Alu -31592 NM_001267895 129080 Hs.289106 NM_133455 ENSG00000186998 EMID1 EMI5|EMU1 EMI domain containing 1 protein-coding 223-322 chr7 87662825 87662985 + 2 NA intron (NM_001134406, intron 2 of 9) L1MA3|LINE|L1 34507 NM_138290 154661 Hs.411488 NM_138290 ENSG00000105784 RUNDC3B RPIB9|RPIP9 RUN domain containing 3B protein-coding 302-445 chr8 67980998 67981187 + 2 NA intron (NM_024870, intron 1 of 39) L3|LINE|CR1 29046 NM_025170 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 296-192 chr18 10937257 10937499 + 2 NA intron (NM_022068, intron 3 of 51) intron (NM_022068, intron 3 of 51) -177729 NR_106846 102466735 NR_106846 ENSG00000274838 MIR6788 hsa-mir-6788 microRNA 6788 ncRNA 221-64 chr12 103349446 103349619 + 2 NA intron (NM_001099336, intron 4 of 5) L1M6|LINE|L1 146436 NM_198521 374470 Hs.534649 NM_198521 ENSG00000179088 C12orf42 - chromosome 12 open reading frame 42 protein-coding 293-10 chr1 97122105 97122316 + 2 NA intron (NM_000110, intron 20 of 22) intron (NM_000110, intron 20 of 22) 26287 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 320-199 chr17 11210835 11211056 + 2 NA Intergenic HAL1ME|LINE|L1 -30268 NM_001173462 388336 Hs.592124 NM_175903 ENSG00000188803 SHISA6 - shisa family member 6 protein-coding 359-237 chr2 104567048 104567283 + 2 NA Intergenic Intergenic -56656 NR_110113 101927360 Hs.650324 NR_110113 ENSG00000234781 LINC01103 - long intergenic non-protein coding RNA 1103 ncRNA 365-203 chr2 122248435 122248728 + 2 NA Intergenic Intergenic 492930 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 390-407 chr9 13533555 13533797 + 2 NA Intergenic L1PA15|LINE|L1 -102347 NR_033863 401492 Hs.632651 NR_033863 ENSG00000270547 LINC01235 - long intergenic non-protein coding RNA 1235 ncRNA 183-128 chr6 44812400 44812553 + 2 NA intron (NR_146632, intron 11 of 11) MLT1E2|LTR|ERVL-MaLR -260595 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 295-342 chr4 60574321 60574483 + 2 NA Intergenic MIR|SINE|MIR -348217 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 286-99 chr12 114156746 114156911 + 2 NA Intergenic Intergenic 84942 NR_146536 105369996 Hs.577438 NR_146536 ENSG00000257476 LINC02459 - long intergenic non-protein coding RNA 2459 ncRNA 419-178 chr3 34588361 34588631 + 2 NA Intergenic L1PA15|LINE|L1 789866 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 548-162 chr4 58370194 58370554 + 2 NA Intergenic Intergenic 165954 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 617-108 chr5 55277507 55278059 + 2 NA intron (NR_144323, intron 12 of 26) AluSx|SINE|Alu 29911 NR_144324 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 530-178 chr4 63207761 63208161 + 2 NA Intergenic LOR1b|LTR|ERV1 -1046196 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 480-159 chr2 145298054 145298406 + 2 NA Intergenic Intergenic 630263 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 225-65 chr11 124249294 124249513 + 2 NA promoter-TSS (NR_045681) promoter-TSS (NR_045681) -273 NM_001002905 26494 Hs.448172 NM_001002905 ENSG00000197849 OR8G1 HSTPCR25|OR8G1P|TPCR25 olfactory receptor family 8 subfamily G member 1 (gene/pseudogene) protein-coding 419-162 chr20 6663588 6663832 + 2 NA Intergenic Intergenic 72426 NR_146909 105372516 Hs.580741 NR_146909 LINC01713 - long intergenic non-protein coding RNA 1713 ncRNA 312-232 chr2 48580647 48580885 + 2 NA exon (NM_001198594, exon 1 of 8) exon (NM_001198594, exon 1 of 8) 179 NM_001198594 286749 Hs.732016 NM_172311 ENSG00000068781 STON1-GTF2A1L ALF|GTF2A1L|GTF2A1LF|SALF STON1-GTF2A1L readthrough protein-coding 193-15 chr1 158020416 158020559 + 2 NA intron (NM_001286349, intron 1 of 12) L2c|LINE|L2 -5063 NR_145471 100505785 Hs.664656 NR_145471 KIRREL1-IT1 KIRREL-IT1 KIRREL1 intronic transcript 1 ncRNA 183-138 chr6 121608676 121608779 + 2 NA Intergenic Intergenic 173081 NM_000165 2697 Hs.74471 NM_000165 ENSG00000152661 GJA1 AVSD3|CMDR|CX43|EKVP|EKVP3|GJAL|HLHS1|HSS|ODDD|PPKCA gap junction protein alpha 1 protein-coding 552-194 chr6 164726965 164727362 + 2 NA Intergenic Intergenic 94900 NR_131926 105378111 NR_131926 MEAT6 - melanoma-associated transcript 6 ncRNA 427-24 chr10 64490269 64490565 + 2 NA Intergenic Intergenic -335111 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 229-31 chr10 54106989 54107173 + 2 NA intron (NM_001354411, intron 16 of 34) intron (NM_001354411, intron 16 of 34) -379149 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 439-288 chr8 105222483 105222747 + 2 NA Intergenic Intergenic -95823 NM_012082 23414 Hs.431009 NM_012082 ENSG00000169946 ZFPM2 DIH3|FOG2|SRXY9|ZC2HC11B|ZNF89B|hFOG-2 zinc finger protein, FOG family member 2 protein-coding 582-174 chrX 104791531 104792055 + 2 NA intron (NM_017416, intron 2 of 10) MIR3|SINE|MIR 225594 NM_017416 26280 Hs.675519 NM_017416 ENSG00000189108 IL1RAPL2 IL-1R9|IL1R9|IL1RAPL-2|TIGIRR-1 interleukin 1 receptor accessory protein like 2 protein-coding 314-396 chr3 156387822 156388076 + 2 NA intron (NM_172159, intron 1 of 13) intron (NM_172159, intron 1 of 13) 58987 NR_046618 100874084 Hs.131282 NR_046618 ENSG00000242370 KCNAB1-AS1 - KCNAB1 antisense RNA 1 ncRNA 316-59 chr10 23947935 23948098 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) 253289 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 282-136 chr14 81808292 81808463 + 2 NA Intergenic Intergenic -65239 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 254-42 chr10 84007581 84007794 + 2 NA Intergenic L1ME4c|LINE|L1 -131822 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 289-81 chr11 54776475 54776622 + 2 NA Intergenic ALR/Alpha|Satellite|centr 69716 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 333-584 chr8 119885506 119885773 + 2 NA intron (NM_001283012, intron 1 of 6) intron (NM_001283012, intron 1 of 6) 11917 NM_022783 64798 Hs.112981 NM_022783 ENSG00000155792 DEPTOR DEP.6|DEPDC6 DEP domain containing MTOR interacting protein protein-coding 288-291 chr4 30476331 30476614 + 2 NA Intergenic L1ME5|LINE|L1 -243897 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 145-11 chr10 54627861 54627983 + 2 NA intron (NR_134503, intron 4 of 5) MER31B|LTR|ERV1 -19965 NR_031642 100302192 NR_031642 ENSG00000221594 MIR548F1 MIR548F-1|MIRN548F1|hsa-mir-548f-1 microRNA 548f-1 ncRNA 722-83 chr9 29293784 29294399 + 2 NA Intergenic L1M1|LINE|L1 -80490 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 372-488 chr8 111852448 111852670 + 2 NA Intergenic L1MA6|LINE|L1 475920 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 194-111 chr20 42999129 42999298 + 2 NA intron (NM_133170, intron 1 of 31) L1ME4a|LINE|L1 30470 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 452-55 chr12 38407923 38408243 + 2 NA Intergenic Intergenic 91309 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 213-19 chr1 189716115 189716283 + 2 NA Intergenic Intergenic 759811 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 326-399 chr5 35161023 35161247 + 2 NA intron (NM_000949, intron 1 of 9) intron (NM_000949, intron 1 of 9) -43013 NM_001204318 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 265-39 chr10 81450206 81450454 + 2 NA Intergenic L1MA2|LINE|L1 -424864 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 550-122 chr2 154382925 154383315 + 2 NA intron (NM_052917, intron 9 of 12) intron (NM_052917, intron 9 of 12) 74318 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 606-107 chr3 53917353 53917904 + 2 NA Intergenic AluY|SINE|Alu -25769 NM_021237 58515 Hs.58471 NM_021237 ENSG00000113811 SELENOK HSPC030|HSPC297|SELK selenoprotein K protein-coding 127-56 chr3 89495266 89495361 + 2 NA Intergenic Intergenic 387692 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 471-148 chr20 23528797 23529140 + 2 NA intron (NR_001279, intron 2 of 3) LTR10F|LTR|ERV1 9822 NR_001279 164380 Hs.400007 NR_001279 ENSG00000204663 CST13P CSTT|CTES6 cystatin 13, pseudogene pseudo 167-60 chr2 121754340 121754468 + 2 NA Intergenic Intergenic -1141 NM_001261401 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 398-98 chr14 42941417 42941730 + 2 NA Intergenic MIRb|SINE|MIR 1334717 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 321-274 chr19 58177023 58177225 + 2 NA Intergenic Intergenic -5865 NM_001278734 10782 Hs.83761 NM_016324 ENSG00000171606 ZNF274 HFB101|ZF2|ZKSCAN19|ZSCAN51 zinc finger protein 274 protein-coding 329-412 chr4 69916880 69917125 + 2 NA Intergenic Intergenic -14066 NM_001890 1446 Hs.3155 NM_001890 ENSG00000126545 CSN1S1 CASA|CSN1 casein alpha s1 protein-coding 573-139 chr5 15173307 15173678 + 2 NA Intergenic L1M1|LINE|L1 93068 NR_109944 101929454 Hs.453273 NR_109944 LINC02149 - long intergenic non-protein coding RNA 2149 ncRNA 923-9 chr17 51692144 51692748 + 2 NA intron (NM_001082533, intron 5 of 9) L1MA8|LINE|L1 257019 NR_146897 105371828 Hs.640153 NR_146897 LINC02073 - long intergenic non-protein coding RNA 2073 ncRNA 267-166 chr19 44044481 44044714 + 2 NA Intergenic L1MD|LINE|L1 -7439 NM_013361 7766 Hs.720813 NM_013361 ENSG00000178386 ZNF223 - zinc finger protein 223 protein-coding 346-502 chr8 129060861 129061141 + 2 NA Intergenic Intergenic -95000 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 606-24 chr10 117898123 117898691 + 2 NA Intergenic Intergenic -148414 NR_026939 255082 Hs.89387 NM_178816 ENSG00000177640 CASC2 C10orf5 cancer susceptibility 2 ncRNA 151-62 chr5 85490919 85491017 + 2 NA Intergenic L1MA7|LINE|L1 -791476 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 822-30 chr2 53445463 53446114 + 2 NA Intergenic Intergenic -321995 NM_001346127 494143 Hs.585944 NM_001008708 ENSG00000143942 CHAC2 GCG1 ChaC cation transport regulator homolog 2 protein-coding 423-117 chr19 43873571 43873866 + 2 NA exon (NM_001033719, exon 2 of 2) exon (NM_001033719, exon 2 of 2) 6418 NM_001033719 342908 Hs.76561 NM_001033719 ENSG00000176222 ZNF404 - zinc finger protein 404 protein-coding 323-71 chr10 109106403 109106724 + 2 NA Intergenic Intergenic 816683 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 212-38 chr10 48544978 48545131 + 2 NA intron (NR_144642, intron 3 of 9) Charlie5|DNA|hAT-Charlie -33465 NR_146782 100689073 Hs.667964 NR_146782 ARHGAP22-IT1 - ARHGAP22 intronic transcript 1 ncRNA 417-162 chr20 16869334 16869730 + 2 NA Intergenic L1MA3|LINE|L1 121179 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 505-167 chr2 225760736 225761054 + 2 NA Intergenic Intergenic 360009 NM_020864 57624 Hs.224409 NM_020864 ENSG00000144460 NYAP2 KIAA1486 neuronal tyrosine-phosphorylated phosphoinositide-3-kinase adaptor 2 protein-coding 241-209 chr2 209103233 209103430 + 2 NA Intergenic Intergenic -320716 NM_001039538 4133 Hs.368281 NM_002374 ENSG00000078018 MAP2 MAP-2|MAP2A|MAP2B|MAP2C microtubule associated protein 2 protein-coding 778-9 chr10 68244069 68244605 + 2 NA Intergenic AluJr|SINE|Alu -12224 NM_145178 220202 Hs.175396 NM_145178 ENSG00000179774 ATOH7 Math5|NCRNA|PHPVAR|RNANC|bHLHa13 atonal bHLH transcription factor 7 protein-coding 202-197 chr5 7143293 7143445 + 2 NA Intergenic Intergenic 125985 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 315-401 chr5 158596267 158596453 + 2 NA Intergenic L1MB3|LINE|L1 -186587 NR_109888 101927697 Hs.483960 NR_109888 ENSG00000276778 LINC02227 - long intergenic non-protein coding RNA 2227 ncRNA 450-181 chr22 29236816 29237185 + 2 NA intron (NM_001267895, intron 12 of 14) AluSg7|SINE|Alu 30981 NR_138044 25807 Hs.106730 NM_012265 ENSG00000100263 RHBDD3 C22orf3|HS984G1A|PTAG rhomboid domain containing 3 protein-coding 402-367 chr9 102873840 102874152 + 2 NA Intergenic Intergenic -121337 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 324-12 chr1 77645123 77645383 + 2 NA intron (NM_001308237, intron 1 of 13) (TTAA)n|Simple_repeat|Simple_repeat 37405 NM_015534 26009 Hs.480506 NM_015534 ENSG00000036549 ZZZ3 ATAC1 zinc finger ZZ-type containing 3 protein-coding 236-323 chr7 39665378 39665555 + 2 NA intron (NM_005402, intron 1 of 4) Tigger2|DNA|TcMar-Tigger 41894 NM_005402 5898 Hs.6906 NM_005402 ENSG00000006451 RALA RAL RAS like proto-oncogene A protein-coding 346-59 chr11 3190943 3191168 + 2 NA Intergenic Intergenic -25745 NM_020896 114879 Hs.436166 NM_020896 ENSG00000021762 OSBPL5 OBPH1|ORP5 oxysterol binding protein like 5 protein-coding 206-192 chr4 172690667 172690857 + 2 NA intron (NR_125894, intron 1 of 2) intron (NR_125894, intron 1 of 2) -1845 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 383-382 chr8 79543061 79543282 + 2 NA Intergenic L1M1|LINE|L1 -67946 NM_007029 11075 Hs.521651 NM_007029 ENSG00000104435 STMN2 SCG10|SCGN10 stathmin 2 protein-coding 256-41 chr10 55133463 55133688 + 2 NA intron (NM_001354404, intron 3 of 34) L2a|LINE|L2 -332284 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 443-200 chr3 83310512 83310902 + 2 NA Intergenic L1MEc|LINE|L1 1324565 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 359-19 chr1 103866583 103866851 + 2 NA Intergenic ALR/Alpha|Satellite|centr 116876 NM_001008218 277 Hs.599274 NM_001008218 ENSG00000174876 AMY1B AMY1 amylase alpha 1B (salivary) protein-coding 218-203 chr22 47473185 47473370 + 2 NA intron (NR_109967, intron 1 of 2) L1MC3|LINE|L1 13834 NR_109967 101927722 Hs.589927 NR_109967 ENSG00000218357 LINC01644 LL22NC03-75H12.2 long intergenic non-protein coding RNA 1644 ncRNA 264-139 chr14 86612326 86612500 + 2 NA Intergenic L1MB8|LINE|L1 -293365 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 326-75 chr10 73918541 73918818 + 2 NA intron (NR_160938, intron 1 of 4) intron (NR_160938, intron 1 of 4) 4098 NR_160938 414236 Hs.585453 NM_001001791 ENSG00000222047 C10orf55 - chromosome 10 open reading frame 55 ncRNA 315-22 chr1 112194768 112194946 + 2 NA Intergenic L1MCa|LINE|L1 -201357 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 347-423 chr5 166598416 166598609 + 2 NA Intergenic Intergenic 327858 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 215-109 chr17 13207107 13207260 + 2 NA Intergenic L1PA15|LINE|L1 99577 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 310-49 chr10 77665516 77665747 + 2 NA Intergenic Intergenic -27823 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 334-199 chr16 76060834 76061049 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -216460 NM_001322188 85445 Hs.461389 NM_033401 ENSG00000152910 CNTNAP4 CASPR4 contactin associated protein like 4 protein-coding 120-14 chr12 59599214 59599278 + 2 NA intron (NM_001270623, intron 1 of 5) intron (NM_001270623, intron 1 of 5) 3217 NM_001270622 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 237-54 chr11 41323640 41323823 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 135905 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 495-258 chr8 110524224 110524533 + 2 NA Intergenic L1MC3|LINE|L1 503055 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 505-186 chr22 32401237 32401609 + 2 NA intron (NM_014306, intron 5 of 11) MIRb|SINE|MIR 10824 NM_014306 51493 Hs.474643 NM_014306 ENSG00000100220 RTCB C22orf28|DJ149A16.6|FAAP|HSPC117 RNA 2',3'-cyclic phosphate and 5'-OH ligase protein-coding 297-342 chr4 119125988 119126178 + 2 NA Intergenic L2a|LINE|L2 -9701 NM_016599 51778 Hs.732122 NM_016599 ENSG00000172399 MYOZ2 C4orf5|CMH16|CS-1|FATZ-2 myozenin 2 protein-coding 412-5 chr1 39362636 39362995 + 2 NA intron (NM_012090, intron 43 of 92) L1MC5a|LINE|L1 -46258 NM_015038 643314 Hs.658760 NM_015038 ENSG00000127603 KIAA0754 - KIAA0754 protein-coding 408-301 chr6 120324393 120324761 + 2 NA Intergenic LTR16D1|LTR|ERVL 309398 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 174-82 chr21 30302784 30302945 + 2 NA Intergenic Intergenic -13350 NM_001128598 100131902 Hs.580882 NM_001128598 ENSG00000232263 KRTAP25-1 KAP25.1 keratin associated protein 25-1 protein-coding 291-308 chr4 17419468 17419656 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 92528 NM_000320 5860 Hs.75438 NM_000320 ENSG00000151552 QDPR DHPR|HDHPR|PKU2|SDR33C1 quinoid dihydropteridine reductase protein-coding 359-134 chr13 93192051 93192376 + 2 NA Intergenic Intergenic -34594 NM_005708 10082 Hs.444329 NM_005708 ENSG00000183098 GPC6 OMIMD1 glypican 6 protein-coding 325-402 chr4 96142292 96142548 + 2 NA Intergenic L2a|LINE|L2 -168283 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 401-163 chr2 105974571 105974852 + 2 NA Intergenic L2a|LINE|L2 -90977 NM_032411 84417 Hs.43125 NM_032411 ENSG00000119147 ECRG4 C2orf40 ECRG4 augurin precursor protein-coding 342-534 chr8 127878078 127878324 + 2 NA intron (NR_003367, intron 1 of 8) intron (NR_003367, intron 1 of 8) 70522 NR_103558 641384 Hs.629674 NM_001037234 ENSG00000280055 TMEM75 - transmembrane protein 75 ncRNA 402-210 chr3 87963769 87964106 + 2 NA intron (NM_001322210, intron 2 of 2) intron (NM_001322210, intron 2 of 2) -18639 NM_000866 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 620-71 chr2 184133446 184134020 + 2 NA Intergenic AluSx|SINE|Alu -245242 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 410-35 chr10 55442495 55442819 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -156385 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 309-545 chr8 83945825 83946094 + 2 NA Intergenic Intergenic -236828 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 249-468 chrX 67825358 67825530 + 2 NA Intergenic L1MA2|LINE|L1 280821 NM_001011645 367 Hs.76704 NM_000044 ENSG00000169083 AR AIS|AR8|DHTR|HUMARA|HYSP1|KD|NR3C4|SBMA|SMAX1|TFM androgen receptor protein-coding 252-170 chr18 78919672 78919871 + 2 NA Intergenic Intergenic -60504 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 320-110 chr12 5360229 5360483 + 2 NA Intergenic Tigger4b|DNA|TcMar-Tigger -71752 NM_001102654 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 402-250 chr4 135342070 135342440 + 2 NA Intergenic Intergenic -218696 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 313-177 chr16 3424292 3424497 + 2 NA Intergenic L1MA9|LINE|L1 19110 NM_152457 146434 Hs.88630 NM_152457 ENSG00000167981 ZNF597 HIT-4 zinc finger protein 597 protein-coding 334-163 chr14 89117714 89118021 + 2 NA Intergenic Intergenic 293216 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 328-542 chr7 89829543 89829719 + 2 NA Intergenic Intergenic -289769 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 314-297 chr2 121672744 121672914 + 2 NA intron (NR_037857, intron 2 of 3) AluY|SINE|Alu 22840 NR_037856 254128 Hs.712685 NR_037856 ENSG00000236859 NIFK-AS1 - NIFK antisense RNA 1 ncRNA 216-68 chr11 117321538 117321695 + 2 NA promoter-TSS (NM_001271933) promoter-TSS (NM_001271933) -162 NM_001271933 22897 Hs.504009 NM_014956 ENSG00000110274 CEP164 NPHP15 centrosomal protein 164 protein-coding 632-11 chr10 70770021 70770505 + 2 NA TTS (NR_134532) TTS (NR_134532) 12310 NR_134534 219793 Hs.386698 NM_152710 ENSG00000166220 TBATA C10orf27|SPATIAL thymus, brain and testes associated protein-coding 227-331 chr6 168471341 168471527 + 2 NA intron (NM_001166412, intron 1 of 12) L1MB2|LINE|L1 30250 NM_022138 64094 Hs.487200 NM_022138 ENSG00000112562 SMOC2 DTDP1|MST117|MSTP117|MSTP140|SMAP2|bA270C4A.1|bA37D8.1|dJ421D16.1 SPARC related modular calcium binding 2 protein-coding 423-168 chr22 34894636 34895038 + 2 NA intron (NR_138042, intron 3 of 4) L2a|LINE|L2 103079 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 160-90 chr5 71810372 71810486 + 2 NA Intergenic Intergenic 91154 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 526-99 chr17 64109449 64109829 + 2 NA intron (NM_001433, intron 1 of 21) intron (NM_001433, intron 1 of 21) 20505 NM_001433 2081 Hs.133982 NM_001433 ENSG00000178607 ERN1 IRE1|IRE1P|IRE1a|hIRE1p endoplasmic reticulum to nucleus signaling 1 protein-coding 431-26 chr1 197377608 197377954 + 2 NA intron (NM_001193640, intron 3 of 9) intron (NM_001193640, intron 3 of 9) 109529 NR_047563 23418 Hs.126135 NM_012076 ENSG00000134376 CRB1 LCA8|RP12 crumbs cell polarity complex component 1 protein-coding 364-402 chr7 6682721 6682994 + 2 NA Intergenic Intergenic 24090 NM_016265 7559 Hs.431471 NM_006956 ENSG00000164631 ZNF12 GIOT-3|HZF11|KOX3|ZNF325 zinc finger protein 12 protein-coding 543-153 chr20 56456002 56456347 + 2 NA intron (NM_001164116, intron 6 of 6) intron (NM_001164116, intron 6 of 6) -12411 NM_001283037 51507 Hs.517134 NM_016407 ENSG00000022277 RTF2 C20orf43|CDAO5|HSPC164|RTFDC1|SHUJUN-3 replication termination factor 2 protein-coding 335-580 chrX 53866349 53866647 + 2 NA Intergenic L1MA3|LINE|L1 176649 NM_001184898 23133 Hs.133352 NM_015107 ENSG00000172943 PHF8 JHDM1F|KDM7B|MRXSSD|ZNF422 PHD finger protein 8 protein-coding 590-150 chr6 118991423 118991862 + 2 NA intron (NM_024581, intron 9 of 17) L2b|LINE|L2 -56480 NM_153255 254394 Hs.279008 NM_017696 ENSG00000111877 MCM9 C6orf61|MCMDC1|ODG4|dJ329L24.1|dJ329L24.3 minichromosome maintenance 9 homologous recombination repair factor protein-coding 291-294 chr3 121942446 121942724 + 2 NA 3' UTR (NM_001145998, exon 21 of 21) 3' UTR (NM_001145998, exon 21 of 21) 48184 NM_021082 6565 Hs.518089 NM_021082 ENSG00000163406 SLC15A2 PEPT2 solute carrier family 15 member 2 protein-coding 157-57 chr2 35345088 35345216 + 2 NA Intergenic L1M4b|LINE|L1 -126253 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 345-337 chr3 1755778 1756117 + 2 NA Intergenic Intergenic -342856 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 462-209 chr4 82293550 82293924 + 2 NA Intergenic Intergenic 80254 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 377-361 chr7 24527948 24528203 + 2 NA Intergenic L1MD2|LINE|L1 -45377 NM_001303037 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 271-349 chr5 64422976 64423232 + 2 NA Intergenic L1PA13|LINE|L1 -82911 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 308-431 chr6 110483117 110483327 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -6609 NM_033125 85413 Hs.520319 NM_033125 ENSG00000004809 SLC22A16 CT2|FLIPT2|HEL-S-18|OAT6|OCT6|OKB1|dJ261K5.1 solute carrier family 22 member 16 protein-coding 213-205 chr4 64628501 64628706 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -219143 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 301-473 chr9 8323621 8323844 + 2 NA intron (NM_130392, intron 29 of 30) Tigger1|DNA|TcMar-Tigger 410214 NM_130393 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 472-184 chr20 12659447 12659720 + 2 NA Intergenic L2c|LINE|L2 277380 NR_109872 102606466 Hs.602196 NR_109872 LOC102606466 - uncharacterized LOC102606466 ncRNA 426-316 chr9 108793048 108793278 + 2 NA Intergenic LTR28B|LTR|ERV1 62823 NM_006686 10880 Hs.534390 NM_006686 ENSG00000148156 ACTL7B Tact1 actin like 7B protein-coding 316-68 chr10 56683155 56683359 + 2 NA Intergenic L1MA9|LINE|L1 -321984 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 258-412 chr8 135798907 135799148 + 2 NA Intergenic Intergenic 341571 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 202-93 chr17 40816167 40816326 + 2 NA Intergenic Intergenic -2899 NR_160888 147184 Hs.353163 NM_145274 ENSG00000167920 TMEM99 - transmembrane protein 99 (putative) ncRNA 269-116 chr14 53714447 53714711 + 2 NA Intergenic Intergenic 233905 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 267-446 chr9 31251896 31252107 + 2 NA Intergenic L1MA2|LINE|L1 129489 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 446-126 chr18 5105667 5106035 + 2 NA Intergenic Intergenic 24669 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 243-437 chr8 33954154 33954330 + 2 NA Intergenic L1PREC2|LINE|L1 -354136 NM_001305115 78986 Hs.8719 NM_024025 ENSG00000133878 DUSP26 DSP-4|DUSP24|LDP-4|LDP4|MKP-8|MKP8|NATA1|NEAP|SKRP3 dual specificity phosphatase 26 protein-coding 268-306 chr5 35280919 35281071 + 2 NA Intergenic Intergenic -50508 NM_000949 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 216-294 chr5 171939906 171940039 + 2 NA intron (NM_033644, intron 1 of 12) MER2|DNA|TcMar-Tigger 66901 NM_012300 23291 Hs.484138 NM_012300 ENSG00000072803 FBXW11 BTRC2|BTRCP2|FBW1B|FBXW1B|Fbw11|Hos F-box and WD repeat domain containing 11 protein-coding 288-110 chr14 30997537 30997764 + 2 NA intron (NM_001083893, intron 1 of 17) MER74B|LTR|ERVL 17092 NR_030354 693209 NR_030354 ENSG00000207952 MIR624 MIRN624|hsa-mir-624|mir-624 microRNA 624 ncRNA 352-19 chr1 102697122 102697353 + 2 NA Intergenic Intergenic 411259 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 402-21 chr1 230529590 230529856 + 2 NA Intergenic L1PB1|LINE|L1 65860 NR_146479 101927553 Hs.680219 NR_146479 ENSG00000232964 LINC01737 - long intergenic non-protein coding RNA 1737 ncRNA 212-239 chr4 94071517 94071683 + 2 NA Intergenic Intergenic 135956 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 428-177 chr3 66336238 66336597 + 2 NA intron (NR_028475, intron 5 of 9) intron (NR_028475, intron 5 of 9) 115414 NM_001350991 115286 Hs.379386 NM_173471 ENSG00000144741 SLC25A26 COXPD28|SAMC solute carrier family 25 member 26 protein-coding 250-111 chr13 100460160 100460356 + 2 NA intron (NR_148027, intron 22 of 23) intron (NR_148027, intron 22 of 23) 20757 NR_047686 100885777 Hs.662554 NR_047686 PCCA-AS1 - PCCA antisense RNA 1 ncRNA 299-425 chr7 70999897 71000107 + 2 NA Intergenic Intergenic -132142 NM_022479 64409 Hs.488591 NM_022479 ENSG00000185274 GALNT17 GALNACT17|GALNT16|GALNT20|GALNTL3|GalNAc-T17|GalNAc-T19|GalNAc-T5L|WBSCR17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 514-247 chr6 22416608 22417076 + 2 NA Intergenic L1MEh|LINE|L1 -114007 NM_001163558 5617 Hs.1905 NM_000948 ENSG00000172179 PRL GHA1 prolactin protein-coding 332-285 chr2 226754911 226755176 + 2 NA intron (NM_005544, intron 1 of 1) intron (NM_005544, intron 1 of 1) 43747 NM_005544 3667 Hs.471508 NM_005544 ENSG00000169047 IRS1 HIRS-1 insulin receptor substrate 1 protein-coding 349-225 chr19 27646476 27646723 + 2 NA Intergenic HSAT4|Satellite|centr -146832 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 221-144 chr2 101734146 101734298 + 2 NA intron (NM_145686, intron 2 of 30) intron (NM_145686, intron 2 of 30) 36515 NM_145687 9448 Hs.701013 NM_004834 ENSG00000071054 MAP4K4 FLH21957|HEL-S-31|HGK|MEKKK4|NIK mitogen-activated protein kinase kinase kinase kinase 4 protein-coding 599-108 chr5 67652657 67653085 + 2 NA Intergenic AluJo|SINE|Alu -6082 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 331-81 chr11 19134130 19134389 + 2 NA intron (NM_001001483, intron 1 of 15) AluJo|SINE|Alu 17091 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 235-381 chr9 6227091 6227284 + 2 NA intron (NM_001199640, intron 1 of 6) L1MEd|LINE|L1 -9894 NM_001314045 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 401-134 chr18 4532380 4532738 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -77252 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 191-214 chr8 101292156 101292299 + 2 NA Intergenic MLT1G1|LTR|ERVL-MaLR -76666 NR_002182 83955 Hs.567608 NM_032031 ENSG00000228224 NACA4P FKSG17|NACAP1 NACA family member 4, pseudogene pseudo 490-122 chr18 72712734 72713111 + 2 NA Intergenic (TTA)n|Simple_repeat|Simple_repeat 140460 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 593-61 chr17 70543240 70543774 + 2 NA Intergenic Intergenic 373972 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 372-171 chr16 17509468 17509778 + 2 NA Intergenic MER65C|LTR|ERV1 -38663 NM_022166 64131 Hs.22907 NM_022166 ENSG00000103489 XYLT1 DBQD2|PXYLT1|XT-I|XT1|XTI|XYLTI|xylT-I xylosyltransferase 1 protein-coding 644-89 chr6 165260811 165261268 + 2 NA Intergenic L1MA7|LINE|L1 48566 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 129-64 chr4 189299038 189299136 + 2 NA Intergenic Intergenic -360519 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 525-89 chr17 53931283 53931725 + 2 NA Intergenic L1MA2|LINE|L1 108577 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 303-382 chr5 159295967 159296250 + 2 NA Intergenic Intergenic 32818 NM_145049 134510 Hs.591733 NM_145049 ENSG00000164332 UBLCP1 CPUB1 ubiquitin like domain containing CTD phosphatase 1 protein-coding 167-42 chr17 31249297 31249438 + 2 NA intron (NM_000267, intron 30 of 56) intron (NM_000267, intron 30 of 56) 47872 NM_002544 4974 Hs.113874 NM_002544 ENSG00000126861 OMG OMGP oligodendrocyte myelin glycoprotein protein-coding 392-27 chr10 56338547 56338895 + 2 NA Intergenic L1PB3|LINE|L1 22538 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 332-59 chr10 53302730 53302995 + 2 NA Intergenic Intergenic -531162 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 320-83 chr11 42962691 42962977 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR 306535 NR_033868 399881 Hs.446761 NR_033868 ENSG00000251557 HNRNPKP3 - heterogeneous nuclear ribonucleoprotein K pseudogene 3 pseudo 161-48 chr2 36958267 36958368 + 2 NA intron (NM_003162, intron 1 of 17) L1MEd|LINE|L1 8219 NM_003162 6801 Hs.127486 NM_003162 ENSG00000115808 STRN PPP2R6A|SG2NA|STRN1 striatin protein-coding 273-213 chr2 44283879 44284030 + 2 NA intron (NM_000341, intron 3 of 9) L1ME3F|LINE|L1 8474 NM_000341 6519 Hs.112916 NM_000341 ENSG00000138079 SLC3A1 ATR1|CSNU1|D2H|NBAT|RBAT solute carrier family 3 member 1 protein-coding 299-126 chr14 41202950 41203165 + 2 NA Intergenic Intergenic 248346 NR_109758 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 475-258 chr7 33382626 33382889 + 2 NA intron (NM_198428, intron 17 of 22) MIR|SINE|MIR 253193 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 531-44 chr12 29940013 29940456 + 2 NA Intergenic Intergenic -155475 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 158-71 chr3 29634426 29634565 + 2 NA intron (NM_001003792, intron 4 of 13) LTR16C|LTR|ERVL 299661 NR_046556 100873977 Hs.581453 NR_046556 ENSG00000235593 RBMS3-AS1 - RBMS3 antisense RNA 1 ncRNA 602-24 chr12 13352447 13352868 + 2 NA Intergenic L1MEi|LINE|L1 24088 NR_036555 283422 Hs.448717 NM_182558 ENSG00000180861 LINC01559 C12orf36 long intergenic non-protein coding RNA 1559 ncRNA 297-252 chr2 235274652 235274936 + 2 NA Intergenic L1M5|LINE|L1 -219249 NM_001244888 116987 Hs.435039 NM_014914 ENSG00000157985 AGAP1 AGAP-1|CENTG2|GGAP1|cnt-g2 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 221-85 chr14 60482320 60482508 + 2 NA intron (NM_174978, intron 4 of 17) L1ME3Cz|LINE|L1 3649 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 701-42 chr2 100786945 100787603 + 2 NA Intergenic Intergenic -32865 NM_002518 4862 Hs.156832 NM_002518 ENSG00000170485 NPAS2 MOP4|PASD4|bHLHe9 neuronal PAS domain protein 2 protein-coding 587-137 chr5 128931432 128931860 + 2 NA Intergenic L2c|LINE|L2 -33481 NM_014031 28965 Hs.49765 NM_014031 ENSG00000113396 SLC27A6 ACSVL2|FACVL2|FATP6|VLCS-H1 solute carrier family 27 member 6 protein-coding 299-241 chr2 190562046 190562324 + 2 NA Intergenic Intergenic -27463 NM_001142645 100131211 Hs.659824 NM_001142645 ENSG00000189362 NEMP2 TMEM194B nuclear envelope integral membrane protein 2 protein-coding 314-256 chr19 46236032 46236216 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 6382 NM_198541 374918 Hs.546554 NM_198541 ENSG00000188293 IGFL1 APRG644|UNQ644 IGF like family member 1 protein-coding 299-174 chr17 61457881 61458165 + 2 NA intron (NM_001321120, intron 3 of 8) intron (NM_001321120, intron 3 of 8) 1535 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 267-233 chr20 58967417 58967631 + 2 NA Intergenic Intergenic -13732 NM_198976 51497 Hs.517148 NM_016397 ENSG00000101158 NELFCD HSPC130|NELF-C|NELF-D|TH1|TH1L negative elongation factor complex member C/D protein-coding 157-64 chr2 112572904 112573023 + 2 NA intron (NM_019014, intron 13 of 14) intron (NM_019014, intron 13 of 14) -11484 NR_163920 292-225 chr2 117792530 117792725 + 2 NA Intergenic Intergenic -22064 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 280-273 chr3 190584947 190585211 + 2 NA intron (NR_157352, intron 3 of 10) intron (NR_157352, intron 3 of 10) 70994 NM_001364881 3556 Hs.478673 NM_002182 ENSG00000196083 IL1RAP C3orf13|IL-1RAcP|IL1R3 interleukin 1 receptor accessory protein protein-coding 524-53 chr13 55913275 55913680 + 2 NA Intergenic Intergenic 739023 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 425-38 chr10 55219573 55219862 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -379325 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 529-27 chr11 21247037 21247403 + 2 NA intron (NM_201551, intron 14 of 18) Tigger3b|DNA|TcMar-Tigger 577634 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 137-25 chr14 55083079 55083198 + 2 NA Intergenic L1ME2|LINE|L1 31491 NM_144578 93487 Hs.594338 NM_144578 ENSG00000168175 MAPK1IP1L C14orf32|MISS|c14_5346 mitogen-activated protein kinase 1 interacting protein 1 like protein-coding 382-139 chr17 12160019 12160259 + 2 NA Intergenic L1MA4|LINE|L1 78240 NR_030613 100126313 NR_030613 ENSG00000266297 MIR744 MIRN744|hsa-mir-744|mir-744 microRNA 744 ncRNA 336-582 chr9 72655111 72655389 + 2 NA intron (NM_138691, intron 5 of 23) THE1D|LTR|ERVL-MaLR 133449 NM_138691 117531 Hs.670211 NM_138691 ENSG00000165091 TMC1 DFNA36|DFNB11|DFNB7 transmembrane channel like 1 protein-coding 363-391 chr6 90395446 90395778 + 2 NA Intergenic L2c|LINE|L2 82870 NR_039671 100616109 NR_039671 ENSG00000266760 MIR4464 mir-4464 microRNA 4464 ncRNA 341-502 chr7 97043918 97044155 + 2 NA Intergenic LTR81A|LTR|Gypsy -19205 NM_005221 1749 Hs.99348 NM_005221 ENSG00000105880 DLX5 SHFM1D distal-less homeobox 5 protein-coding 358-29 chr1 232125175 232125406 + 2 NA Intergenic L1MB5|LINE|L1 199456 NR_126441 104472714 NR_126441 ENSG00000226758 DISC1-IT1 - DISC1 intronic transcript 1 ncRNA 235-164 chr2 49956294 49956522 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) 17795 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 359-469 chr8 64684362 64684639 + 2 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) -102608 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 342-280 chr20 17417986 17418280 + 2 NA intron (NM_002594, intron 6 of 11) MIR|SINE|MIR 113246 NM_001195 631 Hs.129702 NM_001195 ENSG00000125864 BFSP1 CP115|CP94|CTRCT33|LIFL-H beaded filament structural protein 1 protein-coding 328-166 chr15 25489231 25489529 + 2 NA Intergenic L1MB7|LINE|L1 -50324 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 466-98 chr17 6049790 6050187 + 2 NA Intergenic (AC)n|Simple_repeat|Simple_repeat -20626 NM_015253 23302 Hs.370166 NM_015253 ENSG00000179314 WSCD1 - WSC domain containing 1 protein-coding 249-374 chr7 9555163 9555352 + 2 NA Intergenic L2a|LINE|L2 -79013 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 502-34 chr10 45500374 45500702 + 2 NA intron (NM_001282866, intron 2 of 7) L1M3|LINE|L1 34833 NM_001002266 220972 Hs.499489 NM_145021 ENSG00000165406 MARCH8 CMIR|MARCH-VIII|MIR|RNF178|c-MIR membrane associated ring-CH-type finger 8 protein-coding 310-444 chr6 40247181 40247421 + 2 NA Intergenic Intergenic 108705 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 517-289 chr9 74241890 74242265 + 2 NA Intergenic L1MA9|LINE|L1 -129454 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 213-297 chr9 26995371 26995551 + 2 NA 3' UTR (NM_022901, exon 5 of 5) 3' UTR (NM_022901, exon 5 of 5) 10211 NM_022901 64922 Hs.128071 NM_022901 ENSG00000184434 LRRC19 - leucine rich repeat containing 19 protein-coding 715-90 chr8 138628840 138629512 + 2 NA intron (NM_152888, intron 50 of 64) intron (NM_152888, intron 50 of 64) -131446 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 485-23 chr10 8840581 8841059 + 2 NA Intergenic MamGypLTR2c|LTR|Gypsy -57169 NR_131944 105755953 Hs.564146 NR_131944 ENSG00000234752 LINC02676 - long intergenic non-protein coding RNA 2676 ncRNA 217-115 chr14 61496288 61496456 + 2 NA intron (NM_006255, intron 10 of 13) MIRc|SINE|MIR 73822 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 705-68 chr3 74823731 74824360 + 2 NA Intergenic L1PB1|LINE|L1 -302905 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 375-65 chr10 126828727 126828999 + 2 NA Intergenic L1MA5A|LINE|L1 -76546 NM_001290223 1793 Hs.159195 NM_001380 ENSG00000150760 DOCK1 DOCK180|ced5 dedicator of cytokinesis 1 protein-coding 319-117 chr12 118951745 118952047 + 2 NA Intergenic LTR79|LTR|ERVL -29645 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 222-136 chr17 54917303 54917475 + 2 NA intron (NM_001321173, intron 7 of 9) HAL1ME|LINE|L1 16537 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 363-374 chr5 145334482 145334701 + 2 NA Intergenic L1M2|LINE|L1 500751 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 307-312 chr3 132094844 132095119 + 2 NA Intergenic Intergenic -55375 NM_153429 131034 Hs.199877 NM_130808 ENSG00000196353 CPNE4 COPN4|CPN4 copine 4 protein-coding 319-502 chr7 46278047 46278226 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -356864 NM_001013398 3486 Hs.450230 NM_000598 ENSG00000146674 IGFBP3 BP-53|IBP3 insulin like growth factor binding protein 3 protein-coding 368-376 chr5 144806131 144806406 + 2 NA Intergenic Intergenic 600877 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 332-363 chr4 16468687 16468999 + 2 NA Intergenic Intergenic 242180 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 395-368 chrX 78140092 78140298 + 2 NA promoter-TSS (NM_015975) promoter-TSS (NM_015975) -545 NM_015975 51616 Hs.592248 NM_015975 ENSG00000187325 TAF9B DN-7|DN7|TAF9L|TAFII31L|TFIID-31 TATA-box binding protein associated factor 9b protein-coding 265-393 chr8 89078006 89078196 + 2 NA Intergenic Intergenic 679610 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 311-230 chr19 39758645 39758859 + 2 NA Intergenic Intergenic -17842 NM_001143832 342900 Hs.451638 NM_001143832 ENSG00000213921 LEUTX - leucine twenty homeobox protein-coding 233-265 chr4 79737843 79738038 + 2 NA Intergenic L1M3|LINE|L1 -89531 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 333-268 chr2 133223233 133223496 + 2 NA intron (NM_207481, intron 4 of 17) intron (NM_207481, intron 4 of 17) -42831 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 148-38 chr18 10366366 10366480 + 2 NA Intergenic Intergenic 47947 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 216-278 chr5 67615262 67615453 + 2 NA Intergenic L1ME1|LINE|L1 31432 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 392-337 chr8 127704406 127704762 + 2 NA intron (NR_117102, intron 2 of 3) intron (NR_117102, intron 2 of 3) 29383 NR_117102 100270680 Hs.333720 NR_117101 ENSG00000249375 CASC11 CARLO7|CARLo-7|LINC00990|TCONS_00014535 cancer susceptibility 11 ncRNA 256-194 chr2 48038100 48038327 + 2 NA Intergenic L1M4a1|LINE|L1 -132420 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 420-156 chr2 175837187 175837489 + 2 NA Intergenic Intergenic 164929 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 290-23 chr1 164900168 164900444 + 2 NA Intergenic Intergenic -125665 NR_038072 100505795 Hs.661039 NR_038072 ENSG00000233693 LOC100505795 - uncharacterized LOC100505795 ncRNA 353-476 chr7 19883684 19883943 + 2 NA Intergenic Intergenic -110196 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 424-297 chrX 27639390 27639673 + 2 NA intron (NM_001353450, intron 2 of 4) L1MA1|LINE|L1 49187 NR_148432 347442 Hs.720885 NM_001136533 ENSG00000189186 DCAF8L2 WDR42C DDB1 and CUL4 associated factor 8 like 2 protein-coding 287-379 chr7 51099265 51099469 + 2 NA intron (NM_015198, intron 6 of 12) L1MB2|LINE|L1 217442 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 298-324 chr4 59041864 59042055 + 2 NA intron (NR_133941, intron 2 of 2) intron (NR_133941, intron 2 of 2) 28386 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 356-235 chr2 50512035 50512276 + 2 NA intron (NM_001330096, intron 7 of 16) intron (NM_001330096, intron 7 of 16) -164399 NM_138735 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 453-153 chr3 2657996 2658422 + 2 NA intron (NM_175607, intron 4 of 24) MER61A|LTR|ERV1 -234006 NM_175613 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 283-407 chr7 8070436 8070705 + 2 NA intron (NM_138426, intron 5 of 7) intron (NM_138426, intron 5 of 7) 101774 NM_138426 113263 Hs.131673 NM_138426 ENSG00000106415 GLCCI1 FAM117C|GCTR|GIG18|TSSN1 glucocorticoid induced 1 protein-coding 416-2 chr1 12749886 12750233 + 2 NA intron (NM_001330361, intron 1 of 2) L1MB3|LINE|L1 3859 NM_001330361 93190 Hs.98095 NM_152290 ENSG00000157330 C1orf158 - chromosome 1 open reading frame 158 protein-coding 441-273 chr8 140205886 140206176 + 2 NA intron (NM_001160372, intron 17 of 22) L1MC|LINE|L1 -105496 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 715-96 chr9 119747984 119748463 + 2 NA Intergenic Intergenic -186837 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 865-10 chr11 99951133 99951760 + 2 NA intron (NM_001243270, intron 6 of 23) intron (NM_001243270, intron 6 of 23) 395301 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 291-358 chr5 85901613 85901843 + 2 NA Intergenic L2a|LINE|L2 -380716 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 236-274 chr5 7352556 7352765 + 2 NA Intergenic Intergenic -4683 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 250-44 chr10 64033136 64033327 + 2 NA Intergenic Intergenic -511341 NM_001322258 221037 Hs.413416 NM_004241 ENSG00000171988 JMJD1C KDM3C|TRIP-8|TRIP8 jumonji domain containing 1C protein-coding 229-375 chr8 13018607 13018784 + 2 NA intron (NM_020844, intron 4 of 4) Tigger17a|DNA|TcMar-Tigger 6431 NM_001099677 57604 Hs.202521 NM_020844 ENSG00000250305 TRMT9B C8orf79|KIAA1456|TRM9L|hTRM9L tRNA methyltransferase 9B (putative) protein-coding 327-352 chr4 154046 154225 + 2 NA intron (NR_110527, intron 3 of 4) THE1B|LTR|ERVL-MaLR 26014 NM_001289931 255403 Hs.636638 NM_001039127 ENSG00000250312 ZNF718 - zinc finger protein 718 protein-coding 241-128 chr15 94818740 94818890 + 2 NA Intergenic L1M5|LINE|L1 -36548 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 224-222 chr4 62382738 62382902 + 2 NA Intergenic L1MA7|LINE|L1 -221055 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 661-58 chr21 27486955 27487610 + 2 NA Intergenic Intergenic -235097 NR_024357 54088 Hs.570434 NR_024357 ENSG00000225298 LINC00113 C21orf23|NCRNA00113 long intergenic non-protein coding RNA 113 ncRNA 143-36 chr19 32022821 32022926 + 2 NA Intergenic Intergenic -2989 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 707-41 chr17 62316502 62316996 + 2 NA Intergenic L2c|LINE|L2 -41094 NR_027486 440452 Hs.448884 NR_027486 ENSG00000188755 TBC1D3P2 - TBC1 domain family member 3 pseudogene 2 pseudo 325-200 chr16 62991339 62991645 + 2 NA Intergenic Intergenic -955054 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 312-201 chr18 37960452 37960749 + 2 NA Intergenic Intergenic 303465 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 475-51 chr12 4238411 4238759 + 2 NA Intergenic L1MA4A|LINE|L1 -35177 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 256-268 chr3 105740399 105740554 + 2 NA intron (NR_135809, intron 7 of 18) intron (NR_135809, intron 7 of 18) 127115 NM_001321813 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 197-7 chr1 63137654 63137801 + 2 NA Intergenic Intergenic -125256 NR_146606 105378769 Hs.435002 NR_146605 ENSG00000229537 LINC01739 - long intergenic non-protein coding RNA 1739 ncRNA 216-69 chr12 14751467 14751648 + 2 NA Intergenic Intergenic 19574 NM_175054 121504 Hs.745457 NM_175054 ENSG00000197837 HIST4H4 H4/p histone cluster 4 H4 protein-coding 213-98 chr15 56398234 56398413 + 2 NA intron (NM_198524, intron 9 of 12) MER33|DNA|hAT-Charlie 32899 NM_198524 374618 Hs.511476 NM_198524 ENSG00000151575 TEX9 - testis expressed 9 protein-coding 282-208 chr2 75610593 75610811 + 2 NA Intergenic AluJr|SINE|Alu -36081 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 365-187 chr2 49291084 49291390 + 2 NA Intergenic L1MC5a|LINE|L1 -136710 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 296-108 chr12 82482793 82483018 + 2 NA Intergenic Tigger16a|DNA|TcMar-Tigger -124100 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 180-72 chr18 77595402 77595554 + 2 NA Intergenic Intergenic 345630 NM_001480 2587 Hs.272191 NM_001480 ENSG00000166573 GALR1 GALNR|GALNR1 galanin receptor 1 protein-coding 275-40 chr10 43624824 43625011 + 2 NA Intergenic L1MB7|LINE|L1 -3900 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 273-120 chr13 72177445 72177582 + 2 NA Intergenic Intergenic -310309 NM_080759 1602 Hs.129452 NM_004392 ENSG00000276644 DACH1 DACH dachshund family transcription factor 1 protein-coding 337-81 chr11 32038796 32038997 + 2 NA intron (NR_120526, intron 1 of 2) MLT1K|LTR|ERVL-MaLR 2422 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 297-82 chr11 86636685 86636909 + 2 NA intron (NM_001014811, intron 1 of 13) MIRb|SINE|MIR 35401 NM_001014811 10873 Hs.199743 NM_006680 ENSG00000151376 ME3 NADP-ME malic enzyme 3 protein-coding 434-142 chr2 68865127 68865460 + 2 NA 3' UTR (NM_014482, exon 2 of 2) 3' UTR (NM_014482, exon 2 of 2) 6104 NM_014482 27302 Hs.158317 NM_014482 ENSG00000163217 BMP10 - bone morphogenetic protein 10 protein-coding 270-66 chr11 107898181 107898362 + 2 NA Intergenic Intergenic -30177 NM_017516 54734 Hs.354906 NM_017516 ENSG00000179331 RAB39A RAB39 RAB39A, member RAS oncogene family protein-coding 641-7 chr10 23551722 23552200 + 2 NA Intergenic Intergenic 112692 NM_001145373 220213 Hs.499042 NM_001145373 ENSG00000165312 OTUD1 DUBA7|OTDC1 OTU deubiquitinase 1 protein-coding 346-544 chrX 126777701 126778014 + 2 NA Intergenic (TATATTA)n|Simple_repeat|Simple_repeat -41872 NM_001122716 100130613 Hs.130370 NM_001122716 ENSG00000183631 PRR32 CXorf64 proline rich 32 protein-coding 567-152 chr5 175408770 175409152 + 2 NA Intergenic L1ME1|LINE|L1 35221 NM_000794 1812 Hs.2624 NM_000794 ENSG00000184845 DRD1 DADR|DRD1A dopamine receptor D1 protein-coding 159-91 chr7 153437383 153437507 + 2 NA Intergenic L1MC4a|LINE|L1 -25211 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 968-27 chr7 103640970 103641631 + 2 NA intron (NM_005045, intron 16 of 64) intron (NM_005045, intron 16 of 64) -195093 NM_198999 375611 Hs.585146 NM_198999 ENSG00000170615 SLC26A5 DFNB61|PRES solute carrier family 26 member 5 protein-coding 297-116 chr13 28850622 28850837 + 2 NA intron (NM_001366651, intron 2 of 14) intron (NM_001366651, intron 2 of 14) 30390 NM_001366651 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 203-128 chr2 201915435 201915623 + 2 NA Intergenic MSTC|LTR|ERVL-MaLR 108950 NM_001366386 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 394-128 chr16 70805667 70805979 + 2 NA 3' UTR (NM_001270974, exon 86 of 86) 3' UTR (NM_001270974, exon 86 of 86) -4665 NM_001351157 55697 Hs.445061 NM_018052 ENSG00000103043 VAC14 ArPIKfyve|TAX1BP2|TRX VAC14 component of PIKFYVE complex protein-coding 433-19 chr1 247192082 247192376 + 2 NA Intergenic Intergenic 9831 NR_037480 100500849 NR_037480 ENSG00000283881 MIR3916 mir-3916 microRNA 3916 ncRNA 184-81 chr2 21886428 21886597 + 2 NA Intergenic Intergenic -175860 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 319-98 chr11 97183002 97183172 + 2 NA Intergenic Intergenic 674662 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 161-112 chr7 122884377 122884491 + 2 NA intron (NM_001167940, intron 1 of 29) intron (NM_001167940, intron 1 of 29) 2026 NM_001363398 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 563-197 chr9 134015121 134015495 + 2 NA Intergenic LTR50|LTR|ERVL -10168 NR_149319 266655 Hs.654869 NM_001355256 ENSG00000235106 BRD3OS LINC00094|LP2477|NCRNA00094 BRD3 opposite strand protein-coding 280-104 chr13 26638480 26638697 + 2 NA intron (NM_006646, intron 2 of 9) intron (NM_006646, intron 2 of 9) 80885 NM_001291965 10810 Hs.618732 NM_006646 ENSG00000132970 WASF3 Brush-1|SCAR3|WAVE3 WASP family member 3 protein-coding 284-277 chr4 18165090 18165314 + 2 NA Intergenic L1M5|LINE|L1 -143327 NM_001365658 254251 Hs.446201 NM_153686 ENSG00000178177 LCORL MLR1 ligand dependent nuclear receptor corepressor like protein-coding 322-205 chr17 65978706 65978910 + 2 NA intron (NM_001353129, intron 17 of 26) intron (NM_001353129, intron 17 of 26) -152265 NR_126542 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 277-269 chr3 117898848 117899029 + 2 NA Intergenic Intergenic -208013 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 295-211 chr2 63462413 63462643 + 2 NA intron (NR_148704, intron 7 of 18) L2c|LINE|L2 -24521 NM_001042692 51057 Hs.414952 NM_015910 ENSG00000143951 WDPCP BBS15|C2orf86|CHDTHP|CPLANE5|FRITZ|FRTZ WD repeat containing planar cell polarity effector protein-coding 264-278 chr3 100155966 100156158 + 2 NA intron (NM_001167924, intron 2 of 9) HAL1|LINE|L1 -29762 NR_028358 644444 Hs.652353 NR_028357 ENSG00000235156 TMEM30CP CDC50C|TMEM30C transmembrane protein 30C, pseudogene pseudo 294-231 chr2 126046252 126046518 + 2 NA Intergenic L1ME4a|LINE|L1 71600 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 543-131 chr2 136586759 136587191 + 2 NA Intergenic AluSx1|SINE|Alu -178570 NM_001316349 80731 Hs.68533 NM_001080427 ENSG00000144229 THSD7B - thrombospondin type 1 domain containing 7B protein-coding 425-35 chr10 49007319 49007712 + 2 NA Intergenic Intergenic -21928 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 246-205 chr2 144025324 144025499 + 2 NA intron (NM_001354355, intron 7 of 13) intron (NM_001354355, intron 7 of 13) 88344 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 137-96 chr9 13713953 13714047 + 2 NA Intergenic Intergenic -213971 NR_038194 100113404 Hs.149786 NR_038194 ENSG00000205636 LINC00583 C9orf146 long intergenic non-protein coding RNA 583 ncRNA 294-67 chr11 92456554 92456776 + 2 NA intron (NM_001008781, intron 1 of 24) L1ME4a|LINE|L1 104569 NM_001008781 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 300-424 chr7 42710977 42711178 + 2 NA Intergenic Intergenic -4630 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 422-173 chr21 35117511 35117885 + 2 NA Intergenic MIR|SINE|MIR -68400 NM_001754 861 Hs.149261 NM_001754 ENSG00000159216 RUNX1 AML1|AML1-EVI-1|AMLCR1|CBF2alpha|CBFA2|EVI-1|PEBP2aB|PEBP2alpha RUNX family transcription factor 1 protein-coding 364-302 chr4 46042818 46043170 + 2 NA intron (NM_173536, intron 8 of 8) intron (NM_173536, intron 8 of 8) 81060 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 249-259 chr3 37473600 37473810 + 2 NA intron (NM_002207, intron 3 of 27) intron (NM_002207, intron 3 of 27) 21564 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 253-256 chr3 55187965 55188127 + 2 NA intron (NR_147142, intron 2 of 2) intron (NR_147142, intron 2 of 2) 9874 NR_147142 105377096 Hs.640507 NR_147142 ENSG00000243572 LINC02017 - long intergenic non-protein coding RNA 2017 ncRNA 292-442 chr8 118451080 118451335 + 2 NA intron (NM_001101676, intron 2 of 4) intron (NM_001101676, intron 2 of 4) -169794 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 635-48 chr19 35589687 35590119 + 2 NA Intergenic AluSx|SINE|Alu -7992 NR_110750 102723617 Hs.579904 NR_110750 ENSG00000224910 LINC01766 - long intergenic non-protein coding RNA 1766 ncRNA 566-94 chr2 118581164 118581542 + 2 NA Intergenic MIRb|SINE|MIR 21613 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 298-15 chr1 152531929 152532205 + 2 NA Intergenic L1MC5a|LINE|L1 17585 NM_019060 54544 Hs.110196 NM_019060 ENSG00000169509 CRCT1 C1orf42|NICE-1|NICE1 cysteine rich C-terminal 1 protein-coding 308-194 chr18 7350041 7350269 + 2 NA Intergenic Intergenic 110851 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 377-320 chr5 42274754 42275123 + 2 NA Intergenic Intergenic -99593 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 229-123 chr15 53999072 53999268 + 2 NA intron (NM_001329919, intron 1 of 31) L1ME2z|LINE|L1 -13478 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 319-518 chr8 19690501 19690731 + 2 NA intron (NR_148898, intron 1 of 9) intron (NR_148898, intron 1 of 9) -7855 NR_024040 55790 Hs.613729 NM_018371 ENSG00000147408 CSGALNACT1 CSGalNAcT-1|ChGn|ChGn-1|beta4GalNAcT chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 354-293 chr3 53429446 53429661 + 2 NA Intergenic Intergenic -65058 NM_000720 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 223-99 chr15 53089505 53089719 + 2 NA Intergenic L1PA16|LINE|L1 -26753 NR_147181 105370822 Hs.527821 NR_147181 ENSG00000259237 LINC02490 - long intergenic non-protein coding RNA 2490 ncRNA 367-458 chr8 103937504 103937841 + 2 NA intron (NR_145711, intron 10 of 21) L2b|LINE|L2 118452 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 341-86 chr11 69147353 69147531 + 2 NA non-coding (NR_104161, exon 3 of 3) non-coding (NR_104161, exon 3 of 3) -8493 NM_001369201 107984345 NM_001369201 SMIM38 - small integral membrane protein 38 protein-coding 278-211 chr2 59415523 59415749 + 2 NA Intergenic Intergenic 197928 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 641-116 chr8 134315073 134315569 + 2 NA Intergenic Intergenic -282750 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 322-139 chr13 30751417 30751618 + 2 NA intron (NM_001204406, intron 3 of 5) intron (NM_001204406, intron 3 of 5) 16009 NM_001629 241 Hs.507658 NM_001629 ENSG00000132965 ALOX5AP FLAP arachidonate 5-lipoxygenase activating protein protein-coding 451-167 chr4 121313998 121314349 + 2 NA Intergenic Intergenic 66845 NM_198179 84109 Hs.368977 NM_198179 ENSG00000186867 QRFPR AQ27|GPR103|SP9155 pyroglutamylated RFamide peptide receptor protein-coding 603-29 chr12 14890281 14890682 + 2 NA Intergenic MIRb|SINE|MIR -4627 NM_000900 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 321-398 chr3 191907885 191908071 + 2 NA Intergenic L1MEd|LINE|L1 -330652 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 314-440 chr4 131103110 131103323 + 2 NA Intergenic LTR40b|LTR|ERVL -661622 NR_125884 101927305 Hs.507924 NR_125883 SNHG27 - small nucleolar RNA host gene 27 ncRNA 217-397 chrX 76470630 76470818 + 2 NA Intergenic L1MA2|LINE|L1 43014 NM_020932 57692 Hs.8453 NM_020932 ENSG00000198934 MAGEE1 DAMAGE|HCA1 MAGE family member E1 protein-coding 233-395 chr9 25000671 25000847 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger -454862 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 541-49 chr12 65437044 65437483 + 2 NA intron (NM_001031679, intron 5 of 6) intron (NM_001031679, intron 5 of 6) 120048 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 350-139 chr14 67601363 67601593 + 2 NA Intergenic Intergenic -1177 NM_001363694 5283 Hs.553497 NM_004569 ENSG00000100564 PIGH GPI-H phosphatidylinositol glycan anchor biosynthesis class H protein-coding 703-96 chr8 118824732 118825245 + 2 NA Intergenic Intergenic 126897 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 297-504 chr9 8111306 8111467 + 2 NA Intergenic Intergenic -311608 NM_001318058 90871 Hs.7517 NM_033428 ENSG00000137038 DMAC1 C9orf123|TMEM261 distal membrane arm assembly complex 1 protein-coding 558-89 chr2 15679420 15679902 + 2 NA Intergenic L2c|LINE|L2 -11121 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 455-185 chr4 71343446 71343747 + 2 NA intron (NM_003759, intron 1 of 22) L2a|LINE|L2 4543 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 385-58 chr11 110912695 110913001 + 2 NA Intergenic Intergenic 184470 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 493-82 chr14 49124411 49124782 + 2 NA Intergenic MIR|SINE|MIR 461784 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 636-59 chr18 7346297 7346788 + 2 NA Intergenic L1ME1|LINE|L1 114464 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 329-407 chr4 60292460 60292740 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger -630019 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 504-146 chr2 225950570 225950942 + 2 NA Intergenic L1M2|LINE|L1 -192038 NR_046102 646736 Hs.712836 NR_046102 LOC646736 - uncharacterized LOC646736 ncRNA 341-4 chr1 23363082 23363268 + 2 NA exon (NM_001077195, exon 4 of 4) exon (NM_001077195, exon 4 of 4) 5211 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 299-257 chr20 33243062 33243260 + 2 NA 3' UTR (NM_130852, exon 9 of 9) 3' UTR (NM_130852, exon 9 of 9) 7165 NM_001243193 51297 Hs.211092 NM_016583 ENSG00000198183 BPIFA1 LUNX|NASG|PLUNC|SPLUNC1|SPURT|bA49G10.5 BPI fold containing family A member 1 protein-coding 211-276 chr7 52834000 52834165 + 2 NA Intergenic MIRb|SINE|MIR -201551 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 258-133 chr14 84450899 84451101 + 2 NA Intergenic LTR102_Mam|LTR|ERVL -820932 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 319-505 chr7 63369575 63369818 + 2 NA Intergenic L1M4b|LINE|L1 -19630 NR_136256 102724738 Hs.512544 NR_136256 LOC102724738 - solute carrier family 25 member 1 pseudogene pseudo 234-356 chr7 19619399 19619560 + 2 NA Intergenic Intergenic 85957 NR_036101 100422967 NR_036101 ENSG00000265932 MIR3146 mir-3146 microRNA 3146 ncRNA 256-60 chr11 4521137 4521316 + 2 NA Intergenic MLT2B4|LTR|ERVL -23965 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 276-361 chr5 11127490 11127647 + 2 NA intron (NM_001288715, intron 11 of 20) MLT1E2-int|LTR|ERVL-MaLR -366334 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 236-222 chr3 73205835 73206022 + 2 NA Intergenic Intergenic 144269 NM_018029 55096 Hs.658858 NM_018029 ENSG00000255423 EBLN2 EBLN-2 endogenous Bornavirus like nucleoprotein 2 protein-coding 378-368 chr6 46086431 46086671 + 2 NA intron (NM_001370650, intron 1 of 6) intron (NM_001370650, intron 1 of 6) -6203 NM_001114086 53405 Hs.485489 NM_016929 ENSG00000112782 CLIC5 DFNB102|DFNB103|MST130|MSTP130 chloride intracellular channel 5 protein-coding 307-337 chr4 38312525 38312728 + 2 NA Intergenic L1MC5a|LINE|L1 -54288 NR_149123 105374410 NR_149123 ENSG00000248227 LINC02513 - long intergenic non-protein coding RNA 2513 ncRNA 362-459 chr9 38118169 38118421 + 2 NA Intergenic Intergenic -49068 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 252-119 chr14 73845523 73845689 + 2 NA Intergenic L1M4|LINE|L1 -6225 NM_001371335 224-34 chr10 73297872 73298007 + 2 NA intron (NM_001367801, intron 15 of 27) MIRb|SINE|MIR 45198 NR_134460 414245 Hs.568860 NR_038373 ENSG00000227540 DNAJC9-AS1 C10orf103|bA537A6.3 DNAJC9 antisense RNA 1 ncRNA 212-58 chr11 19768139 19768296 + 2 NA intron (NM_182964, intron 1 of 37) intron (NM_182964, intron 1 of 37) -8134 NR_039843 100616426 NR_039843 ENSG00000264309 MIR4694 - microRNA 4694 ncRNA 328-218 chr18 2179994 2180203 + 2 NA Intergenic LTR1D|LTR|ERV1 391407 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 509-225 chr6 156639170 156639524 + 2 NA Intergenic L1MDa|LINE|L1 -138508 NM_001346813 57492 Hs.291587 NM_017519 ENSG00000049618 ARID1B 6A3-5|BAF250B|BRIGHT|CSS1|DAN15|ELD/OSA1|MRD12|OSA2|P250R AT-rich interaction domain 1B protein-coding 288-222 chr20 14308812 14308964 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) 28724 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 143-71 chr5 174647375 174647465 + 2 NA Intergenic Intergenic -77162 NM_002449 4488 Hs.89404 NM_002449 ENSG00000120149 MSX2 CRS2|FPP|HOX8|MSH|PFM|PFM1 msh homeobox 2 protein-coding 327-343 chr3 144836343 144836604 + 2 NA Intergenic L1MA4|LINE|L1 863392 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 561-189 chr7 93929251 93929683 + 2 NA TTS (NM_004126) TTS (NM_004126) 7732 NM_004126 2791 Hs.83381 NM_004126 ENSG00000127920 GNG11 GNGT11 G protein subunit gamma 11 protein-coding 534-196 chr5 37959199 37959583 + 2 NA Intergenic MER9a3|LTR|ERVK 10900 NR_134262 105374729 Hs.150642 NR_134262 ENSG00000251518 LINC02110 - long intergenic non-protein coding RNA 2110 ncRNA 312-293 chr20 43912410 43912602 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -2346 NM_001098797 84969 Hs.26608 NM_032883 ENSG00000124191 TOX2 C20orf100|GCX-1|GCX1|dJ1108D11.2|dJ495O3.1 TOX high mobility group box family member 2 protein-coding 397-64 chr12 48269959 48270279 + 2 NA Intergenic L1MC2|LINE|L1 -58861 NM_181788 341567 Hs.155833 NM_181788 ENSG00000187166 H1FNT H1.7|H1T2 H1 histone family member N, testis specific protein-coding 192-18 chr10 31291080 31291210 + 2 NA Intergenic MIR|SINE|MIR -27272 NM_001323643 6935 Hs.124503 NM_030751 ENSG00000148516 ZEB1 AREB6|BZP|DELTAEF1|FECD6|NIL2A|PPCD3|TCF8|ZFHEP|ZFHX1A zinc finger E-box binding homeobox 1 protein-coding 344-20 chr1 106383050 106383349 + 2 NA Intergenic Intergenic -354946 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 339-624 chrX 69194483 69194719 + 2 NA intron (NR_103715, intron 1 of 4) intron (NR_103715, intron 1 of 4) 15044 NR_103715 100996279 NR_103715 ENSG00000215162 LINC00269 CXorf62|NCRNA00269 long intergenic non-protein coding RNA 269 ncRNA 278-13 chr1 115147715 115147926 + 2 NA Intergenic Intergenic -58317 NM_005725 10100 Hs.310458 NM_005725 ENSG00000134198 TSPAN2 NET3|TSN2|TSPAN-2 tetraspanin 2 protein-coding 699-108 chr9 109148352 109148892 + 2 NA intron (NM_014334, intron 2 of 4) intron (NM_014334, intron 2 of 4) 18669 NM_014334 23732 Hs.347537 NM_014334 ENSG00000260230 FRRS1L C9orf4|CG-6|CG6|EIEE37 ferric chelate reductase 1 like protein-coding 300-269 chr3 26155834 26156030 + 2 NA Intergenic Intergenic -282237 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 684-16 chr10 77612012 77612658 + 2 NA intron (NM_001271519, intron 1 of 28) intron (NM_001271519, intron 1 of 28) 25473 NM_001271520 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 323-334 chr3 95701954 95702183 + 2 NA Intergenic Intergenic -18875 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 250-11 chr1 85937036 85937273 + 2 NA intron (NM_152890, intron 24 of 59) ERV3-16A3_I-int|LTR|ERVL 219317 NR_146343 255631 Hs.659516 NM_152890 ENSG00000171502 COL24A1 - collagen type XXIV alpha 1 chain protein-coding 593-132 chr7 21861100 21861590 + 2 NA intron (NM_001277115, intron 68 of 81) intron (NM_001277115, intron 68 of 81) 84554 NM_018719 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 306-261 chr2 199011726 199011990 + 2 NA Intergenic L1MA8|LINE|L1 446081 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 210-303 chr9 7149619 7149822 + 2 NA intron (NR_148680, intron 19 of 21) intron (NR_148680, intron 19 of 21) 392370 NR_148680 23081 Hs.709425 NM_015061 ENSG00000107077 KDM4C GASC1|JHDM3C|JMJD2C|TDRD14C lysine demethylase 4C protein-coding 349-349 chr3 175758638 175758936 + 2 NA intron (NM_207015, intron 13 of 13) intron (NM_207015, intron 13 of 13) 17546 NR_046714 100874245 Hs.614827 NR_046714 NAALADL2-AS1 - NAALADL2 antisense RNA 1 ncRNA 174-24 chr11 100364215 100364327 + 2 NA Intergenic L1PA16|LINE|L1 -323017 NM_001367945 143872 Hs.44004 NM_032021 ENSG00000165895 ARHGAP42 AD031|GRAF3|TMEM133 Rho GTPase activating protein 42 protein-coding 417-31 chr10 56110901 56111120 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 250249 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 159-9 chr10 27502356 27502443 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -1775 NM_001256412 22931 Hs.406799 NM_021252 ENSG00000099246 RAB18 RAB18LI1|WARBM3 RAB18, member RAS oncogene family protein-coding 254-373 chr7 30174687 30174864 + 2 NA Intergenic L1ME3G|LINE|L1 39789 NM_152793 222166 Hs.200100 NM_152793 ENSG00000180354 MTURN C7orf41|Ells1 maturin, neural progenitor differentiation regulator homolog protein-coding 244-193 chr20 4009313 4009468 + 2 NA intron (NM_001134338, intron 1 of 6) L2|LINE|L2 6168 NM_001134338 11237 Hs.547576 NM_007219 ENSG00000101236 RNF24 G1L ring finger protein 24 protein-coding 359-525 chrX 88050232 88050561 + 2 NA Intergenic L1P4|LINE|L1 532594 NM_057162 56062 Hs.49075 NM_019117 ENSG00000102271 KLHL4 DKELCHL|KHL4 kelch like family member 4 protein-coding 339-402 chr4 52370831 52371011 + 2 NA Intergenic Intergenic 285618 NM_001134223 64854 Hs.7966 NM_022832 ENSG00000109189 USP46 - ubiquitin specific peptidase 46 protein-coding 356-425 chr6 70070567 70070911 + 2 NA intron (NM_001858, intron 15 of 50) intron (NM_001858, intron 15 of 50) 204183 NM_001858 1310 Hs.444842 NM_001858 ENSG00000082293 COL19A1 COL9A1L|D6S228E collagen type XIX alpha 1 chain protein-coding 719-13 chr12 10632949 10633416 + 2 NA intron (NM_018423, intron 4 of 10) L2a|LINE|L2 -19573 NM_001319985 55110 Hs.104650 NM_018048 ENSG00000111196 MAGOHB MGN2|mago|magoh mago homolog B, exon junction complex subunit protein-coding 249-406 chr8 50810612 50810856 + 2 NA Intergenic L1MD2|LINE|L1 646603 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 193-30 chr10 66594744 66594927 + 2 NA intron (NM_001127384, intron 10 of 17) MIR|SINE|MIR -331201 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 179-75 chr3 191980734 191980835 + 2 NA Intergenic L1M4|LINE|L1 -257846 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 397-349 chr8 143166042 143166336 + 2 NA Intergenic L2b|LINE|L2 -5535 NM_001130478 4062 Hs.159590 NM_002347 ENSG00000176956 LY6H NMLY6 lymphocyte antigen 6 family member H protein-coding 619-53 chr15 78808841 78809395 + 2 NA intron (NM_014272, intron 1 of 23) intron (NM_014272, intron 1 of 23) 2346 NM_014272 11173 Hs.16441 NM_014272 ENSG00000136378 ADAMTS7 ADAM-TS 7|ADAM-TS7|ADAMTS-7 ADAM metallopeptidase with thrombospondin type 1 motif 7 protein-coding 491-40 chr11 103213422 103213840 + 2 NA intron (NM_001377, intron 54 of 88) L1M2|LINE|L1 104205 NM_001080463 79659 Hs.503721 NM_001377 ENSG00000187240 DYNC2H1 ATD3|DHC1b|DHC2|DNCH2|DYH1B|SRPS2B|SRTD3|hdhc11 dynein cytoplasmic 2 heavy chain 1 protein-coding 317-335 chr4 31842553 31842818 + 2 NA Intergenic Intergenic -154694 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 461-181 chr3 181202081 181202433 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 27113 NR_075093 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 310-291 chr20 42723662 42723875 + 2 NA intron (NM_133170, intron 6 of 31) intron (NM_133170, intron 6 of 31) 38285 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 371-322 chr5 116180294 116180627 + 2 NA intron (NR_146220, intron 6 of 7) intron (NR_146220, intron 6 of 7) -75283 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 245-154 chr16 71954551 71954701 + 2 NA intron (NM_181536, intron 16 of 29) intron (NM_181536, intron 16 of 29) 45352 NM_181536 342372 Hs.675286 NM_181536 ENSG00000277481 PKD1L3 - polycystin 1 like 3, transient receptor potential channel interacting protein-coding 367-20 chr1 97006939 97007261 + 2 NA Intergenic Intergenic -88823 NR_046590 100873932 Hs.682651 NR_046590 ENSG00000232878 DPYD-AS1 - DPYD antisense RNA 1 ncRNA 348-360 chr4 60671957 60672192 + 2 NA Intergenic Intergenic -250545 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 384-181 chr2 128912924 128913168 + 2 NA Intergenic L1MB5|LINE|L1 48446 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 246-367 chr7 37262243 37262478 + 2 NA intron (NM_001206480, intron 5 of 21) intron (NM_001206480, intron 5 of 21) 91308 NM_001206482 9844 Hs.434989 NM_014800 ENSG00000155849 ELMO1 CED-12|CED12|ELMO-1 engulfment and cell motility 1 protein-coding 481-42 chr10 103909468 103909762 + 2 NA intron (NM_024928, intron 3 of 9) intron (NM_024928, intron 3 of 9) 8569 NM_024928 79991 Hs.62314 NM_024928 ENSG00000107960 STN1 AAF-44|AAF44|OBFC1|RPA-32|bA541N10.2 STN1 subunit of CST complex protein-coding 297-205 chr2 30857644 30857878 + 2 NA Intergenic L1MA3|LINE|L1 -50315 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 370-358 chr4 117518160 117518396 + 2 NA intron (NR_125757, intron 2 of 3) L1PB4|LINE|L1 89880 NR_125757 103689918 Hs.582062 NR_125757 LINC01378 - long intergenic non-protein coding RNA 1378 ncRNA 117-41 chr7 68576184 68576285 + 2 NA Intergenic Intergenic 555981 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 376-437 chrX 36600631 36600837 + 2 NA Intergenic L1PA3|LINE|L1 -160442 NR_110412 101928627 Hs.590831 NR_110412 ENSG00000226484 LOC101928627 - uncharacterized LOC101928627 ncRNA 735-59 chr3 116893745 116894344 + 2 NA Intergenic L3|LINE|CR1 -27387 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 517-255 chr7 144951742 144952156 + 2 NA Intergenic L1MC1|LINE|L1 -115896 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 216-20 chr1 118817504 118817635 + 2 NA Intergenic Intergenic 170774 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 494-174 chr3 68867512 68867775 + 2 NA intron (NM_001005527, intron 3 of 5) L1MA4|LINE|L1 64904 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 251-279 chr4 183235183 183235401 + 2 NA intron (NR_126473, intron 1 of 1) intron (NR_126473, intron 1 of 1) 5342 NR_126473 101928734 Hs.570713 NR_126473 ENSG00000251128 WWC2-AS1 - WWC2 antisense RNA 1 ncRNA 245-276 chr5 35594088 35594244 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -23697 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 115-40 chr5 179961492 179961576 + 2 NA intron (NM_001280801, intron 7 of 7) intron (NM_001280801, intron 7 of 7) -53637 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 518-254 chr6 41875547 41875907 + 2 NA intron (NM_018561, intron 2 of 6) intron (NM_018561, intron 2 of 6) -4090 NM_001286554 25862 Hs.593575 NM_018561 ENSG00000164663 USP49 - ubiquitin specific peptidase 49 protein-coding 419-251 chr6 48625134 48625518 + 2 NA Intergenic Intergenic -556637 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 331-546 chr8 138218164 138218441 + 2 NA intron (NM_015912, intron 7 of 19) intron (NM_015912, intron 7 of 19) -134757 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 582-75 chr2 98894405 98894939 + 2 NA intron (NM_207362, intron 1 of 9) intron (NM_207362, intron 1 of 9) 41553 NM_207362 343990 Hs.469398 NM_207362 ENSG00000196872 KIAA1211L C2orf55 KIAA1211 like protein-coding 297-508 chr9 29311205 29311473 + 2 NA Intergenic L2c|LINE|L2 -97738 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 237-398 chr8 135561618 135561787 + 2 NA intron (NM_006558, intron 5 of 8) Tigger3c|DNA|TcMar-Tigger 104246 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 425-132 chr2 24396900 24397233 + 2 NA Intergenic L1ME3E|LINE|L1 -36530 NM_001348185 50618 Hs.432562 NM_006277 ENSG00000198399 ITSN2 PRO2015|SH3D1B|SH3P18|SWA|SWAP intersectin 2 protein-coding 283-43 chr1 244331225 244331493 + 2 NA Intergenic L1ME1|LINE|L1 -21276 NM_001012970 200159 Hs.442703 NM_001012970 ENSG00000173728 C1orf100 - chromosome 1 open reading frame 100 protein-coding 327-129 chr12 124051705 124052021 + 2 NA intron (NM_001347902, intron 2 of 4) intron (NM_001347902, intron 2 of 4) 78648 NM_152437 144348 Hs.524828 NM_152437 ENSG00000179195 ZNF664 ZFOC1|ZNF176 zinc finger protein 664 protein-coding 303-448 chr8 65378684 65378929 + 2 NA Intergenic Intergenic 183860 NR_033893 286186 Hs.449427 NR_033893 ENSG00000254081 LINC01299 - long intergenic non-protein coding RNA 1299 ncRNA 398-14 chr1 151488088 151488311 + 2 NA Intergenic AluJb|SINE|Alu -23188 NM_020770 57530 Hs.591464 NM_020770 ENSG00000143375 CGN - cingulin protein-coding 542-94 chr2 40429612 40429996 + 2 NA exon (NM_001112802, exon 2 of 8) exon (NM_001112802, exon 2 of 8) 500 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 502-44 chr11 16648409 16648851 + 2 NA intron (NM_001367872, intron 2 of 16) L1PB1|LINE|L1 89847 NM_001367872 55553 Hs.368226 NM_017508 ENSG00000110693 SOX6 HSSOX6|SOXD SRY-box transcription factor 6 protein-coding 328-524 chr7 19938568 19938760 + 2 NA intron (NR_110114, intron 5 of 5) L1M4b|LINE|L1 -165047 NM_001366625 256130 Hs.487670 NM_152774 ENSG00000173452 TMEM196 - transmembrane protein 196 protein-coding 336-418 chr4 63110534 63110721 + 2 NA Intergenic L1PA8|LINE|L1 -948862 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 218-217 chr3 97243554 97243716 + 2 NA intron (NM_001080448, intron 4 of 17) Charlie23a|DNA|hAT-Charlie -195972 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 236-385 chr9 80938614 80938749 + 2 NA Intergenic Intergenic 750854 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 332-184 chr16 54317554 54317848 + 2 NA Intergenic Intergenic -30914 NM_024336 79191 Hs.499205 NM_024336 ENSG00000177508 IRX3 IRX-1|IRXB1 iroquois homeobox 3 protein-coding 229-27 chr10 34822689 34822906 + 2 NA Intergenic AluJo|SINE|Alu 7029 NR_108043 100505601 Hs.549790 NR_108043 ENSG00000226386 PARD3-AS1 - PARD3 antisense RNA 1 ncRNA 203-108 chr2 46833307 46833444 + 2 NA intron (NR_024452, intron 1 of 2) L1MB8|LINE|L1 5511 NR_024452 100134259 Hs.114449 NR_024452 ENSG00000239332 LINC01119 - long intergenic non-protein coding RNA 1119 ncRNA 313-562 chr9 122644678 122644975 + 2 NA Intergenic L1PA7|LINE|L1 -15291 NM_001004450 347169 Hs.553710 NM_001004450 ENSG00000280094 OR1B1 OR9-26|OR9-B olfactory receptor family 1 subfamily B member 1 (gene/pseudogene) protein-coding 233-377 chr8 101216356 101216518 + 2 NA Intergenic L1MA5|LINE|L1 -10373 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 229-115 chr14 59989448 59989624 + 2 NA intron (NR_075071, intron 17 of 32) HAL1M8|LINE|L1 69823 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 323-306 chr21 29526176 29526353 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 30217 NR_146594 54147 Hs.124532 NR_146594 ENSG00000234293 BACH1-IT3 C21orf8|NCRNA00097 BACH1 intronic transcript 3 ncRNA 375-59 chr10 106433025 106433274 + 2 NA Intergenic L1M4|LINE|L1 292984 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 432-59 chr12 26300732 26300992 + 2 NA Intergenic HERV16-int|LTR|ERVL 105289 NM_005086 8082 Hs.183428 NM_005086 ENSG00000123096 SSPN DAGA5|KRAG|NSPN|SPN1|SPN2 sarcospan protein-coding 226-63 chr11 131760189 131760357 + 2 NA intron (NM_001352006, intron 2 of 9) intron (NM_001352006, intron 2 of 9) -96717 NR_126159 101929637 Hs.730330 NM_207432 ENSG00000224795 NTM-AS1 C11orf39 NTM antisense RNA 1 ncRNA 254-103 chr14 27633004 27633191 + 2 NA TTS (NR_130461) TTS (NR_130461) 181 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 393-330 chr7 64759910 64760240 + 2 NA Intergenic HERV9N-int|LTR|ERV1 -34353 NM_001271638 7697 Hs.184080 NM_006524 ENSG00000197008 ZNF138 pHZ-32 zinc finger protein 138 protein-coding 342-513 chr8 74036334 74036558 + 2 NA Intergenic LTR8B|LTR|ERV1 45054 NM_015364 23643 Hs.726603 NM_015364 ENSG00000154589 LY96 ESOP-1|MD-2|MD2|ly-96 lymphocyte antigen 96 protein-coding 345-262 chr2 79372277 79372602 + 2 NA Intergenic Intergenic 128405 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 378-273 chr3 13737620 13737950 + 2 NA intron (NR_027103, intron 5 of 5) Tigger1|DNA|TcMar-Tigger 87064 NR_027103 285375 Hs.319969 NR_027103 ENSG00000224514 LINC00620 - long intergenic non-protein coding RNA 620 ncRNA 217-93 chr12 114571935 114572083 + 2 NA Intergenic Intergenic 112166 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 463-249 chr6 40880583 40880872 + 2 NA intron (NR_110873, intron 5 of 5) LTR67B|LTR|ERVL 142553 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 484-242 chr6 141155272 141155693 + 2 NA Intergenic MER72|LTR|ERV1 471668 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 407-310 chr7 127130330 127130561 + 2 NA intron (NR_163850, intron 1 of 9) THE1C-int|LTR|ERVL-MaLR -72261 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 272-350 chr5 81690846 81691042 + 2 NA intron (NM_012446, intron 1 of 16) L1MA3|LINE|L1 60309 NM_001256733 23635 Hs.102735 NM_012446 ENSG00000145687 SSBP2 HSPC116|SOSS-B2 single stranded DNA binding protein 2 protein-coding 208-16 chr1 201340172 201340336 + 2 NA Intergenic L1MEf|LINE|L1 37426 NM_001001430 7139 Hs.533613 NM_000364 ENSG00000118194 TNNT2 CMD1D|CMH2|CMPD2|LVNC6|RCM3|TnTC|cTnT troponin T2, cardiac type protein-coding 223-91 chr14 81685990 81686149 + 2 NA Intergenic Intergenic 57069 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 440-87 chr16 63966731 63967013 + 2 NA Intergenic Intergenic 1155191 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 697-71 chr8 90662183 90662842 + 2 NA Intergenic Intergenic -16429 NM_001008495 169200 Hs.567759 NM_001008495 ENSG00000180694 TMEM64 - transmembrane protein 64 protein-coding 267-301 chr4 127786743 127786930 + 2 NA intron (NM_001317382, intron 1 of 18) intron (NM_001317382, intron 1 of 18) 3313 NM_001317382 22824 Hs.135554 NM_014278 ENSG00000164070 HSPA4L APG-1|HSPH3|Osp94 heat shock protein family A (Hsp70) member 4 like protein-coding 295-197 chr2 17058871 17059104 + 2 NA Intergenic Intergenic -393153 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 330-473 chr6 155768713 155768882 + 2 NA Intergenic L1MA5A|LINE|L1 -178000 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 679-6 chr1 85363303 85363863 + 2 NA intron (NM_001134445, intron 2 of 6) MamRTE1|LINE|RTE-BovB 40923 NM_001330655 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 134-35 chr16 9738728 9738836 + 2 NA Intergenic MIR|SINE|MIR -283277 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 302-498 chrX 85647389 85647681 + 2 NA Intergenic L1PA16|LINE|L1 -188245 NR_031710 100302171 NR_031710 ENSG00000283435 MIR1321 MIRN1321|hsa-mir-1321 microRNA 1321 ncRNA 404-40 chr10 61375418 61375641 + 2 NA Intergenic L1PA15|LINE|L1 -77110 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 367-181 chr19 30195875 30196073 + 2 NA Intergenic L1MC4a|LINE|L1 -176410 NM_014717 9745 Hs.378901 NM_014717 ENSG00000198597 ZNF536 - zinc finger protein 536 protein-coding 412-72 chr12 49192888 49193288 + 2 NA Intergenic AluSx1|SINE|Alu -3764 NM_001270400 7846 Hs.654422 NM_006009 ENSG00000167552 TUBA1A B-ALPHA-1|LIS3|TUBA3 tubulin alpha 1a protein-coding 275-124 chr16 3392705 3392921 + 2 NA intron (NM_017810, intron 2 of 5) AluY|SINE|Alu 8191 NM_001324342 54925 Hs.592078 NM_017810 ENSG00000140987 ZSCAN32 HCCS-5|ZNF434 zinc finger and SCAN domain containing 32 protein-coding 431-109 chr18 53663213 53663529 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -82312 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 366-75 chr11 40905258 40905558 + 2 NA intron (NM_020929, intron 1 of 4) intron (NM_020929, intron 1 of 4) 554228 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 535-237 chr8 46304742 46305255 + 2 NA Intergenic ALR/Alpha|Satellite|centr 312645 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 318-510 chr7 52662438 52662622 + 2 NA Intergenic L1M4|LINE|L1 -373103 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 344-483 chr8 50048856 50049166 + 2 NA intron (NR_135798, intron 1 of 15) L1MB7|LINE|L1 -115120 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 299-301 chr3 166945430 166945597 + 2 NA Intergenic L1PA15|LINE|L1 46830 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 311-438 chr6 110671229 110671497 + 2 NA intron (NM_001300963, intron 3 of 13) intron (NM_001300963, intron 3 of 13) -143258 NM_001287215 262 Hs.159118 NM_001634 ENSG00000123505 AMD1 ADOMETDC|AMD|SAMDC adenosylmethionine decarboxylase 1 protein-coding 397-267 chr5 141342596 141342837 + 2 NA 3' UTR (NM_032009, exon 1 of 1) 3' UTR (NM_032009, exon 1 of 1) -1113 NM_018916 56112 Hs.368160 NM_018916 ENSG00000254245 PCDHGA3 PCDH-GAMMA-A3 protocadherin gamma subfamily A, 3 protein-coding 309-258 chr2 113016452 113016631 + 2 NA Intergenic LTR65|LTR|ERV1 11082 NM_014440 27179 Hs.278910 NM_014440 ENSG00000136694 IL36A FIL1|FIL1(EPSILON)|FIL1E|IL-1F6|IL1(EPSILON)|IL1F6 interleukin 36 alpha protein-coding 239-447 chrX 99892461 99892647 + 2 NA Intergenic L1MA10|LINE|L1 517719 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 290-465 chr8 126705174 126705329 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -146773 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 534-278 chrX 54372734 54373199 + 2 NA Intergenic AluSp|SINE|Alu -14920 NM_001002838 65267 Hs.92423 NM_020922 ENSG00000196632 WNK3 PRKWNK3 WNK lysine deficient protein kinase 3 protein-coding 286-156 chr17 52079542 52079744 + 2 NA intron (NM_001082533, intron 2 of 9) intron (NM_001082533, intron 2 of 9) 79071 NM_020178 56934 Hs.463466 NM_020178 ENSG00000154975 CA10 CA-RPX|CARPX|HUCEP-15 carbonic anhydrase 10 protein-coding 474-168 chr20 42722885 42723242 + 2 NA intron (NM_133170, intron 6 of 31) MIR|SINE|MIR 37580 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 269-196 chr2 67437199 67437366 + 2 NA Intergenic Intergenic 39949 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 280-292 chr4 88118744 88118991 + 2 NA intron (NM_001257386, intron 6 of 15) MIR|SINE|MIR 39772 NM_004827 9429 Hs.480218 NM_004827 ENSG00000118777 ABCG2 ABC15|ABCP|BCRP|BCRP1|BMDP|CD338|CDw338|EST157481|GOUT1|MRX|MXR|MXR-1|MXR1|UAQTL1 ATP binding cassette subfamily G member 2 (Junior blood group) protein-coding 462-21 chr10 9210076 9210516 + 2 NA intron (NR_120635, intron 4 of 4) intron (NR_120635, intron 4 of 4) -65317 NR_108039 100507163 Hs.649223 NR_108039 LINC00709 - long intergenic non-protein coding RNA 709 ncRNA 301-114 chr14 45817336 45817531 + 2 NA Intergenic SATR1|Satellite|Satellite -101831 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 309-541 chr8 77826801 77826965 + 2 NA Intergenic L1MA4A|LINE|L1 376186 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 311-237 chr2 12958971 12959162 + 2 NA Intergenic Intergenic 47947 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 330-457 chr6 47676035 47676308 + 2 NA intron (NM_153839, intron 3 of 10) intron (NM_153839, intron 3 of 10) 19699 NM_001368115 222611 Hs.724860 NM_153839 ENSG00000164393 ADGRF2 GPR111|PGR20|hGPCR35 adhesion G protein-coupled receptor F2 protein-coding 735-15 chr12 30297706 30298265 + 2 NA Intergenic Intergenic 379259 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 368-468 chr8 129532776 129533006 + 2 NA intron (NR_130917, intron 1 of 3) L1PA3|LINE|L1 42127 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 342-546 chr9 24362224 24362545 + 2 NA Intergenic L1MA3|LINE|L1 183292 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 406-309 chr9 10389326 10389566 + 2 NA intron (NM_002839, intron 2 of 45) intron (NM_002839, intron 2 of 45) 223556 NM_002839 5789 Hs.446083 NM_002839 ENSG00000153707 PTPRD HPTP|HPTPD|HPTPDELTA|PTPD|RPTPDELTA protein tyrosine phosphatase receptor type D protein-coding 541-196 chr5 148537220 148537598 + 2 NA intron (NM_001040172, intron 3 of 5) L1PA14|LINE|L1 99652 NM_001286410 3360 Hs.483773 NM_000870 ENSG00000164270 HTR4 5-HT4|5-HT4R 5-hydroxytryptamine receptor 4 protein-coding 276-267 chr20 57895113 57895361 + 2 NA Intergenic MIRb|SINE|MIR -108667 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 252-5 chr1 44466870 44467068 + 2 NA intron (NM_001319957, intron 1 of 13) Tigger1|DNA|TcMar-Tigger 42968 NM_001319957 55182 Hs.456557 NM_018150 ENSG00000187147 RNF220 C1orf164 ring finger protein 220 protein-coding 601-59 chr17 54157677 54158080 + 2 NA Intergenic L2a|LINE|L2 334951 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 459-152 chr2 160918129 160918526 + 2 NA Intergenic Intergenic -218628 NM_133484 10010 Hs.132257 NM_004180 ENSG00000136560 TANK I-TRAF|ITRAF|TRAF2 TRAF family member associated NFKB activator protein-coding 247-343 chr5 152632146 152632360 + 2 NA intron (NR_109877, intron 4 of 4) MIRb|SINE|MIR -226974 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 622-125 chr7 11330657 11331118 + 2 NA Intergenic MER5B|DNA|hAT-Charlie 357015 NM_014660 9678 Hs.655688 NM_014660 ENSG00000106443 PHF14 - PHD finger protein 14 protein-coding 277-452 chr9 135368745 135368939 + 2 NA Intergenic L1MC2|LINE|L1 25593 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 258-324 chr5 73610693 73610910 + 2 NA Intergenic L2a|LINE|L2 -15357 NM_001080479 64283 Hs.482521 NM_001080479 ENSG00000214944 ARHGEF28 RGNEF|RIP2|p190RHOGEF Rho guanine nucleotide exchange factor 28 protein-coding 765-29 chr2 83520379 83520782 + 2 NA Intergenic Intergenic -2234 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 297-245 chr2 199316719 199316882 + 2 NA intron (NM_001172509, intron 9 of 10) (TACA)n|Simple_repeat|Simple_repeat 141139 NM_001172509 23314 Hs.516617 NM_015265 ENSG00000119042 SATB2 GLSS SATB homeobox 2 protein-coding 383-396 chr8 129087927 129088183 + 2 NA Intergenic Intergenic -122054 NR_145483 106144608 NR_145483 ENSG00000229140 LINC00976 - long intergenic non-protein coding RNA 976 ncRNA 268-49 chr10 60152498 60152671 + 2 NA intron (NM_001204404, intron 23 of 43) intron (NM_001204404, intron 23 of 43) -11568 NM_001149 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 334-338 chr3 40886129 40886368 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity -313257 NM_001330729 1499 Hs.476018 NM_001904 ENSG00000168036 CTNNB1 CTNNB|EVR7|MRD19|NEDSDV|armadillo catenin beta 1 protein-coding 364-117 chr13 45102583 45102883 + 2 NA Intergenic Intergenic -3546 NR_120424 101929259 Hs.638490 NR_120424 LOC101929259 - uncharacterized LOC101929259 ncRNA 376-231 chr22 22803637 22803962 + 2 NA Intergenic L1M5|LINE|L1 -18977 NR_030755 723778 NR_030755 ENSG00000284049 MIR650 MIRN650|hsa-mir-650 microRNA 650 ncRNA 611-45 chr15 46936255 46936796 + 2 NA Intergenic Intergenic -247564 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 324-350 chr3 82158160 82158378 + 2 NA intron (NR_147146, intron 1 of 8) LTR8B|LTR|ERV1 172127 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 241-303 chr5 58304183 58304359 + 2 NA Intergenic L1ME3A|LINE|L1 155815 NM_006622 10769 Hs.398157 NM_006622 ENSG00000145632 PLK2 SNK|hPlk2|hSNK polo like kinase 2 protein-coding 345-289 chr2 152972036 152972367 + 2 NA Intergenic Intergenic 253564 NR_146428 151188 Hs.643580 NM_152522 ENSG00000177917 ARL6IP6 AIP-6|AIP6|PFAAP1 ADP ribosylation factor like GTPase 6 interacting protein 6 protein-coding 660-44 chr2 107391684 107392212 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger -42423 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 340-9 chr1 46970384 46970641 + 2 NA intron (NM_001320289, intron 1 of 11) intron (NM_001320289, intron 1 of 11) 9148 NM_001320289 260293 Hs.439760 NM_178033 ENSG00000186377 CYP4X1 CYPIVX1 cytochrome P450 family 4 subfamily X member 1 protein-coding 458-176 chr3 118508866 118509263 + 2 NA intron (NR_135547, intron 3 of 3) intron (NR_135547, intron 3 of 3) -132704 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 303-475 chr8 131868106 131868322 + 2 NA Intergenic L2a|LINE|L2 -35879 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 231-123 chr17 4992077 4992282 + 2 NA intron (NM_001167986, intron 4 of 8) L1MC5|LINE|L1 -4504 NM_015099 23125 Hs.632242 NM_015099 ENSG00000108509 CAMTA2 - calmodulin binding transcription activator 2 protein-coding 137-99 chrX 86374479 86374593 + 2 NA intron (NM_001139515, intron 1 of 11) intron (NM_001139515, intron 1 of 11) 111568 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 253-133 chr14 61988070 61988239 + 2 NA intron (NM_001367657, intron 3 of 6) intron (NM_001367657, intron 3 of 6) 60459 NM_001367663 83851 Hs.404139 NM_031914 ENSG00000139973 SYT16 CHR14SYT|SYT14L|Strep14|syt14r synaptotagmin 16 protein-coding 260-257 chr3 25311795 25312010 + 2 NA intron (NM_001290216, intron 4 of 10) intron (NM_001290216, intron 4 of 10) -28900 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 310-498 chr7 135013269 135013569 + 2 NA TTS (NM_001367811) TTS (NM_001367811) 26911 NM_001345850 340351 Hs.648616 NM_178563 ENSG00000146856 AGBL3 CCP3 ATP/GTP binding protein like 3 protein-coding 425-127 chr19 44300905 44301307 + 2 NA intron (NM_004234, intron 2 of 4) intron (NM_004234, intron 2 of 4) 3919 NM_004234 9310 Hs.613424 NM_004234 ENSG00000159917 ZNF235 ANF270|HZF6|ZFP93|ZNF270 zinc finger protein 235 protein-coding 338-316 chr22 32087055 32087339 + 2 NA intron (NM_000343, intron 10 of 14) L1MA8|LINE|L1 28027 NM_001256314 6523 Hs.1964 NM_000343 ENSG00000100170 SLC5A1 D22S675|NAGT|SGLT1 solute carrier family 5 member 1 protein-coding 262-35 chr1 241045986 241046188 + 2 NA intron (NM_001350116, intron 3 of 16) (GTTT)n|Simple_repeat|Simple_repeat -86185 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 669-29 chr14 82682158 82682737 + 2 NA intron (NR_146650, intron 2 of 5) L2c|LINE|L2 39815 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 192-215 chr8 133052428 133052574 + 2 NA intron (NM_001282965, intron 1 of 6) intron (NM_001282965, intron 1 of 6) -2458 NR_146773 100302522 Hs.658759 NR_146773 PTCSC1 NCRNA00197|PTCSC papillary thyroid carcinoma susceptibility candidate 1 ncRNA 133-53 chr4 35961600 35961721 + 2 NA Intergenic L1MC3|LINE|L1 282279 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 282-301 chr3 84688879 84689076 + 2 NA intron (NR_033860, intron 14 of 20) L1MEc|LINE|L1 180598 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 341-357 chr3 177690386 177690579 + 2 NA intron (NR_047568, intron 3 of 3) intron (NR_047568, intron 3 of 3) -126383 NR_110826 102724550 Hs.570526 NR_110826 ENSG00000231574 LINC02015 KCCAT211 long intergenic non-protein coding RNA 2015 ncRNA 361-124 chr13 33980968 33981327 + 2 NA Intergenic L1M5|LINE|L1 162998 NM_002915 5983 Hs.115474 NM_002915 ENSG00000133119 RFC3 RFC38 replication factor C subunit 3 protein-coding 355-507 chr8 106161666 106161897 + 2 NA Intergenic L2a|LINE|L2 -101278 NR_125796 102723356 Hs.571413 NR_125796 ZFPM2-AS1 SCAT3 ZFPM2 antisense RNA 1 ncRNA 299-304 chr3 186394160 186394339 + 2 NA Intergenic L1PA16|LINE|L1 -32015 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 249-143 chr16 71451428 71451663 + 2 NA intron (NM_001304493, intron 5 of 6) MLT1A0|LTR|ERVL-MaLR -9491 NM_001367365 171-71 chr21 30180324 30180442 + 2 NA Intergenic Intergenic -13578 NM_012131 26285 Hs.258589 NM_012131 ENSG00000156282 CLDN17 - claudin 17 protein-coding 410-144 chr2 117570799 117571158 + 2 NA Intergenic L1PA13|LINE|L1 -243713 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 719-32 chr17 34375918 34376335 + 2 NA Intergenic Intergenic -12893 NM_002981 6346 Hs.72918 NM_002981 ENSG00000108702 CCL1 I-309|P500|SCYA1|SISe|TCA3 C-C motif chemokine ligand 1 protein-coding 368-354 chr5 18590710 18591048 + 2 NA Intergenic Intergenic 783605 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 252-320 chr5 23484128 23484317 + 2 NA Intergenic Intergenic -23387 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 123-17 chr12 129641221 129641314 + 2 NA intron (NM_133448, intron 2 of 8) intron (NM_133448, intron 2 of 8) 262758 NM_133448 121256 Hs.507268 NM_133448 ENSG00000151952 TMEM132D MOLT|PPP1R153 transmembrane protein 132D protein-coding 362-423 chr8 25723042 25723397 + 2 NA Intergenic L1PA14|LINE|L1 263986 NM_152562 157313 Hs.33366 NM_152562 ENSG00000184661 CDCA2 PPP1R81|Repo-Man cell division cycle associated 2 protein-coding 348-164 chr15 99581186 99581464 + 2 NA intron (NM_001352616, intron 1 of 10) intron (NM_001352616, intron 1 of 10) 14842 NM_001352616 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 327-421 chr5 144320615 144320799 + 2 NA intron (NM_001370487, intron 2 of 2) intron (NM_001370487, intron 2 of 2) 115316 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 626-35 chr12 115093122 115093576 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -409174 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 356-338 chr3 166704295 166704505 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -194283 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 149-17 chr10 77654349 77654471 + 2 NA Intergenic L1MEd|LINE|L1 -16602 NM_001322832 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 374-57 chr11 99353801 99354144 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -202173 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 319-493 chr7 16326688 16326885 + 2 NA intron (NM_001101417, intron 2 of 8) LFSINE_Vert|SINE|tRNA 94752 NR_160656 729920 Hs.636502 NM_001101417 ENSG00000214960 CRPPA ISPD|LGMDR20|MDDGA7|MDDGC7|Nip|hISPD CDP-L-ribitol pyrophosphorylase A protein-coding 259-97 chr13 36215904 36216116 + 2 NA intron (NM_001198910, intron 6 of 15) intron (NM_001198910, intron 6 of 15) -1395 NM_001282147 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 227-261 chr4 99647593 99647817 + 2 NA intron (NM_001354435, intron 1 of 1) intron (NM_001354435, intron 1 of 1) 6974 NM_001354435 285556 Hs.480371 NM_001354435 ENSG00000248713 C4orf54 FOPV chromosome 4 open reading frame 54 protein-coding 753-9 chr10 42913004 42913517 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 41739 NR_134479 101929445 Hs.376403 NR_134479 ENSG00000234944 LINC02623 - long intergenic non-protein coding RNA 2623 ncRNA 299-274 chr3 23312296 23312495 + 2 NA intron (NM_001370225, intron 3 of 5) L1MA3|LINE|L1 109068 NM_152653 7325 Hs.475688 NM_152653 ENSG00000182247 UBE2E2 UBCH8 ubiquitin conjugating enzyme E2 E2 protein-coding 446 chr1 3031933 3032315 + 2 NA Intergenic Intergenic 10657 NM_080431 140625 Hs.236635 NM_080431 ENSG00000169717 ACTRT2 ARPM2|ARPT2|Arp-T2|HARPM2 actin related protein T2 protein-coding 393-256 chr4 178650265 178650513 + 2 NA Intergenic L1M1|LINE|L1 -742453 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 168-12 chr10 68564948 68565043 + 2 NA intron (NM_030625, intron 1 of 11) AluJr|SINE|Alu 4658 NM_030625 80312 Hs.258855 NM_030625 ENSG00000138336 TET1 CXXC6|LCX|bA119F7.1 tet methylcytosine dioxygenase 1 protein-coding 337-516 chr7 39366057 39366333 + 2 NA intron (NM_001370959, intron 5 of 9) L2a|LINE|L2 -37061 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 329-141 chr13 54216876 54217109 + 2 NA Intergenic MIR|SINE|MIR -84121 NR_108063 100507428 Hs.351262 NR_108062 ENSG00000234787 LINC00458 LncRNA-ES3 long intergenic non-protein coding RNA 458 ncRNA 490-37 chr10 39242765 39243090 + 2 NA Intergenic ALR/Alpha|Satellite|centr 546331 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 329-337 chr21 30575047 30575336 + 2 NA Intergenic Intergenic -13878 NM_181614 337974 Hs.553696 NM_181614 ENSG00000244362 KRTAP19-7 KAP19.7 keratin associated protein 19-7 protein-coding 283-260 chr20 24250740 24250912 + 2 NA Intergenic L1M1|LINE|L1 51059 NR_040102 400839 Hs.651965 NR_040102 ENSG00000230133 LINC01721 - long intergenic non-protein coding RNA 1721 ncRNA 493-70 chr13 71296458 71296788 + 2 NA Intergenic Intergenic 281482 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 254-127 chr15 50521181 50521372 + 2 NA intron (NM_203494, intron 6 of 6) AluSx1|SINE|Alu 25390 NM_203494 373509 Hs.677758 NM_203494 ENSG00000170236 USP50 - ubiquitin specific peptidase 50 protein-coding 400-256 chr4 85854292 85854664 + 2 NA intron (NM_001287805, intron 1 of 7) intron (NM_001287805, intron 1 of 7) 26541 NM_001287805 83478 Hs.444229 NM_031305 ENSG00000138639 ARHGAP24 FILGAP|RC-GAP72|RCGAP72|p73|p73RhoGAP Rho GTPase activating protein 24 protein-coding 418-262 chr7 51486351 51486592 + 2 NA Intergenic L1PA7|LINE|L1 -93215 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 254-221 chr20 16495013 16495205 + 2 NA intron (NM_001199866, intron 11 of 22) intron (NM_001199866, intron 11 of 22) 78339 NM_001199866 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 220-400 chrX 96067547 96067740 + 2 NA Intergenic LTR8|LTR|ERV1 270259 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 318-527 chr7 147552092 147552405 + 2 NA intron (NM_014141, intron 10 of 22) intron (NM_014141, intron 10 of 22) -119431 NR_133930 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 408-191 chr21 16940446 16940676 + 2 NA Intergenic L1MA4|LINE|L1 350324 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 339-596 chr8 134097505 134097703 + 2 NA Intergenic Intergenic 211108 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 149-73 chr3 136941548 136941652 + 2 NA intron (NM_001190796, intron 1 of 2) L1MB5|LINE|L1 11098 NM_001190796 4690 Hs.126889 NM_006153 ENSG00000158092 NCK1 NCK|NCKalpha|nck-1 NCK adaptor protein 1 protein-coding 522-267 chr9 24404087 24404446 + 2 NA Intergenic L1M5|LINE|L1 141410 NM_001271706 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 336-558 chr8 129748979 129749194 + 2 NA intron (NM_031415, intron 13 of 13) intron (NM_031415, intron 13 of 13) 37538 NM_031415 56169 Hs.133244 NM_031415 ENSG00000147697 GSDMC MLZE gasdermin C protein-coding 249-119 chr14 54316759 54316912 + 2 NA Intergenic MER61C|LTR|ERV1 -80033 NM_001330173 1033 Hs.84113 NM_005192 ENSG00000100526 CDKN3 CDI1|CIP2|KAP|KAP1 cyclin dependent kinase inhibitor 3 protein-coding 219-358 chr8 87616602 87616786 + 2 NA Intergenic Intergenic 257321 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 429-319 chr8 142188421 142188706 + 2 NA Intergenic Intergenic -9793 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 263-281 chr4 36972108 36972283 + 2 NA Intergenic Intergenic -29584 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 195-242 chr8 118610845 118611001 + 2 NA intron (NR_109794, intron 1 of 4) intron (NR_109794, intron 1 of 4) -10078 NR_038210 552860 Hs.571527 NR_038210 ENSG00000281641 SAMD12-AS1 C8orf26|NCRNA00252 SAMD12 antisense RNA 1 ncRNA 383-222 chr20 37115692 37115997 + 2 NA intron (NM_152503, intron 18 of 24) THE1D|LTR|ERVL-MaLR -19847 NM_002895 5933 Hs.207745 NM_002895 ENSG00000080839 RBL1 CP107|PRB1|p107 RB transcriptional corepressor like 1 protein-coding 493-296 chr8 89125697 89126082 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie 631822 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 320-492 chr6 96661560 96661777 + 2 NA Intergenic L1PA16|LINE|L1 98543 NM_001322467 9457 Hs.632608 NM_020482 ENSG00000112214 FHL5 1700027G07Rik|ACT|FHL-5|dJ393D12.2 four and a half LIM domains 5 protein-coding 308-209 chr19 44193128 44193298 + 2 NA Intergenic MER65-int|LTR|ERV1 -19315 NM_001289171 7770 Hs.298089 NM_182490 ENSG00000131115 ZNF227 - zinc finger protein 227 protein-coding 338-560 chr8 119432888 119433164 + 2 NA Intergenic Intergenic 16580 NM_002514 4856 Hs.235935 NM_002514 ENSG00000136999 CCN3 IBP-9|IGFBP-9|IGFBP9|NOV|NOVh cellular communication network factor 3 protein-coding 180-109 chr3 166755069 166755216 + 2 NA Intergenic L1MCa|LINE|L1 -143541 NR_135545 105374194 NR_135545 LOC105374194 inv3q26.1 uncharacterized LOC105374194 ncRNA 303-223 chr2 143992483 143992704 + 2 NA intron (NM_001354353, intron 7 of 9) L1MEd|LINE|L1 55526 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 392-243 chr5 6992197 6992512 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -164433 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 412-239 chr4 102858210 102858512 + 2 NA intron (NM_181890, intron 1 of 7) intron (NM_181890, intron 1 of 7) 10532 NM_181893 7323 Hs.518773 NM_003340 ENSG00000109332 UBE2D3 E2(17)KB3|UBC4/5|UBCH5C ubiquitin conjugating enzyme E2 D3 protein-coding 272-193 chr2 65985127 65985315 + 2 NA Intergenic Intergenic 373107 NR_039938 100616464 NR_039938 ENSG00000264525 MIR4778 - microRNA 4778 ncRNA 545 chr1 7945206 7945576 + 2 NA Intergenic Zaphod|DNA|hAT-Tip100 -2226 NM_001561 3604 Hs.86447 NM_001561 ENSG00000049249 TNFRSF9 4-1BB|CD137|CDw137|ILA TNF receptor superfamily member 9 protein-coding 248-299 chr5 19947941 19948132 + 2 NA intron (NM_001349562, intron 2 of 13) L1MD2|LINE|L1 40164 NM_001349563 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 250-262 chr22 42027954 42028145 + 2 NA 3' UTR (NM_152613, exon 6 of 6) 3' UTR (NM_152613, exon 6 of 6) 29261 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 398-16 chr1 166006331 166006548 + 2 NA Intergenic L1PREC2|LINE|L1 98518 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 214-11 chr1 58211273 58211422 + 2 NA intron (NM_001353980, intron 1 of 5) L5|LINE|RTE-X 39156 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 650-36 chr17 29314371 29314916 + 2 NA Intergenic AluSx1|SINE|Alu -20495 NM_020772 57532 Hs.462598 NM_020772 ENSG00000108256 NUFIP2 182-FIP|82-FIP|FIP-82|PIG1 nuclear FMR1 interacting protein 2 protein-coding 925-33 chr8 61852343 61852898 + 2 NA Intergenic Intergenic -37219 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 321-559 chr8 87764244 87764503 + 2 NA Intergenic Intergenic 109642 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 549-140 chr3 84848845 84849240 + 2 NA intron (NR_033860, intron 8 of 20) MSTA-int|LTR|ERVL-MaLR 20533 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 208-242 chr7 22044020 22044170 + 2 NA Intergenic MER44C|DNA|TcMar-Tigger -98196 NM_001127371 55536 Hs.744069 NM_018719 ENSG00000164649 CDCA7L JPO2|R1|RAM2 cell division cycle associated 7 like protein-coding 238-166 chr2 46730622 46730839 + 2 NA intron (NM_144949, intron 1 of 1) intron (NM_144949, intron 1 of 1) 31435 NM_144949 9655 Hs.468426 NM_014011 ENSG00000171150 SOCS5 CIS6|CISH6|Cish5|SOCS-5 suppressor of cytokine signaling 5 protein-coding 313-11 chr1 66855740 66856024 + 2 NA intron (NM_024763, intron 7 of 16) AluSq2|SINE|Alu -54623 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 217-220 chr3 30617570 30617755 + 2 NA intron (NM_003242, intron 1 of 6) intron (NM_003242, intron 1 of 6) 11061 NM_003242 7048 Hs.82028 NM_003242 ENSG00000163513 TGFBR2 AAT3|FAA3|LDS1B|LDS2|LDS2B|MFS2|RIIC|TAAD2|TBR-ii|TBRII|TGFR-2|TGFbeta-RII transforming growth factor beta receptor 2 protein-coding 250-82 chr12 1124633 1124810 + 2 NA intron (NR_027948, intron 6 of 19) L1MEd|LINE|L1 96973 NM_001301248 23085 Hs.601216 NM_178039 ENSG00000082805 ERC1 Cast2|ELKS|ERC-1|RAB6IP2 ELKS/RAB6-interacting/CAST family member 1 protein-coding 285-398 chr8 31025251 31025421 + 2 NA intron (NM_001323312, intron 2 of 2) intron (NM_001323312, intron 2 of 2) 7465 NM_013357 29942 Hs.373778 NM_013357 ENSG00000172733 PURG PURG-A|PURG-B|PURGA|PURGB purine rich element binding protein G protein-coding 445-270 chr8 76510660 76510929 + 2 NA intron (NR_105006, intron 4 of 5) L1M5|LINE|L1 104140 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 335-5 chr1 49669520 49669839 + 2 NA intron (NR_136623, intron 2 of 12) intron (NR_136623, intron 2 of 12) -197594 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 279-286 chr4 38076748 38076953 + 2 NA intron (NM_001253912, intron 14 of 20) intron (NM_001253912, intron 14 of 20) -33331 NM_001253913 23216 Hs.176503 NM_015173 ENSG00000065882 TBC1D1 TBC|TBC1 TBC1 domain family member 1 protein-coding 375-198 chr2 19610621 19610834 + 2 NA Intergenic Intergenic -252104 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 251-39 chr10 101604664 101604811 + 2 NA intron (NM_001329743, intron 4 of 5) MIRb|SINE|MIR -3240 NR_036115 100423033 NR_036115 ENSG00000283558 MIR3158-2 mir-3158-2 microRNA 3158-2 ncRNA 227-408 chrX 73613031 73613224 + 2 NA intron (NM_001300884, intron 3 of 4) L1MB4|LINE|L1 49979 NM_001039840 53344 Hs.496323 NM_001039840 ENSG00000204116 CHIC1 BRX cysteine rich hydrophobic domain 1 protein-coding 317-385 chr5 41141768 41141935 + 2 NA TTS (NM_001115131) TTS (NM_001115131) -70509 NM_173489 133558 Hs.97714 NM_173489 ENSG00000171495 MROH2B HEATR7B2|SPIF maestro heat like repeat family member 2B protein-coding 166-64 chr20 41647269 41647352 + 2 NA Intergenic Intergenic -28933 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 613-126 chr7 107333945 107334355 + 2 NA intron (NM_181733, intron 10 of 20) L1MA5|LINE|L1 -135907 NM_005295 2845 Hs.657277 NM_005295 ENSG00000172209 GPR22 - G protein-coupled receptor 22 protein-coding 481-47 chr11 4775916 4776238 + 2 NA Intergenic L1PB4|LINE|L1 -6139 NM_001004752 256892 NM_001004752 ENSG00000280021 OR51F1 OR11-21|OR51F1P olfactory receptor family 51 subfamily F member 1 (gene/pseudogene) protein-coding 319-390 chr4 155638504 155638785 + 2 NA Intergenic Intergenic -28066 NM_001130687 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 213-192 chr4 13104505 13104699 + 2 NA Intergenic Intergenic 379738 NM_004249 9364 Hs.656060 NM_004249 ENSG00000157869 RAB28 CORD18 RAB28, member RAS oncogene family protein-coding 395-94 chr14 62931750 62932029 + 2 NA intron (NM_139318, intron 7 of 10) HAL1|LINE|L1 113569 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 585-53 chr16 12440113 12440670 + 2 NA intron (NM_032167, intron 18 of 20) L1MB7|LINE|L1 -279930 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 280-203 chr2 116084474 116084640 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 740742 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 441-14 chr1 203121975 203122353 + 2 NA Intergenic MIRc|SINE|MIR -5562 NM_000674 134 Hs.77867 NM_000674 ENSG00000163485 ADORA1 RDC7 adenosine A1 receptor protein-coding 276-357 chr4 175121716 175121901 + 2 NA Intergenic L1PA16|LINE|L1 203450 NM_001130704 11086 Hs.126838 NM_014269 ENSG00000168594 ADAM29 CT73|svph1 ADAM metallopeptidase domain 29 protein-coding 395-296 chr6 135763853 135764100 + 2 NA Intergenic L1ME1|LINE|L1 -87725 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 242-136 chr17 11781851 11782088 + 2 NA intron (NM_001372, intron 39 of 68) intron (NM_001372, intron 39 of 68) -100933 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 485-145 chr2 139477530 139477862 + 2 NA Intergenic LTR12F|LTR|ERV1 580372 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 573-126 chr4 63066348 63066775 + 2 NA Intergenic L1P4|LINE|L1 -904796 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 410-187 chr3 43849674 43849978 + 2 NA Intergenic L1M4a2|LINE|L1 -158232 NM_001346468 55129 Hs.656657 NM_018075 ENSG00000160746 ANO10 SCAR10|TMEM16K anoctamin 10 protein-coding 345-63 chr10 58881811 58882102 + 2 NA Intergenic MER75|DNA|PiggyBac -117562 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 265-305 chr5 56424749 56425001 + 2 NA Intergenic L1ME5|LINE|L1 56894 NR_104664 102467147 Hs.650177 NR_104664 ENSG00000248727 LINC01948 - long intergenic non-protein coding RNA 1948 ncRNA 535-111 chr18 40264563 40264902 + 2 NA Intergenic L1MB7|LINE|L1 198446 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 358-489 chr8 115821425 115821776 + 2 NA Intergenic L1M4b|LINE|L1 -152625 NM_001330599 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 268-122 chr14 70566214 70566420 + 2 NA Intergenic L1M4|LINE|L1 -31313 NM_003814 8748 Hs.177984 NM_003814 ENSG00000134007 ADAM20 - ADAM metallopeptidase domain 20 protein-coding 336-59 chr10 20382475 20382774 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner -169346 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 496-83 chr14 60684129 60684485 + 2 NA Intergenic MLT1H1|LTR|ERVL-MaLR -34830 NM_005982 6495 Hs.633506 NM_005982 ENSG00000126778 SIX1 BOS3|DFNA23|TIP39 SIX homeobox 1 protein-coding 237-403 chr9 31880593 31880772 + 2 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -499192 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 177-69 chr2 27707273 27707405 + 2 NA non-coding (NR_135200, exon 2 of 2) non-coding (NR_135200, exon 2 of 2) 8393 NR_135200 100129995 Hs.515878 NR_135200 ENSG00000205334 LINC01460 - long intergenic non-protein coding RNA 1460 ncRNA 335-51 chr10 48697121 48697399 + 2 NA intron (NM_020945, intron 1 of 61) intron (NM_020945, intron 1 of 61) 11797 NM_020945 57705 Hs.287379 NM_020945 ENSG00000128815 WDFY4 C10orf64 WDFY family member 4 protein-coding 407-30 chr10 58383313 58383687 + 2 NA Intergenic L2c|LINE|L2 -1643 NM_001270782 7019 Hs.594250 NM_003201 ENSG00000108064 TFAM MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 transcription factor A, mitochondrial protein-coding 174-42 chr14 47052058 47052167 + 2 NA intron (NM_001113498, intron 7 of 16) intron (NM_001113498, intron 7 of 16) 291134 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 315-279 chr20 42998541 42998736 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 29895 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 380-368 chr7 67984035 67984350 + 2 NA Intergenic Intergenic -36061 NR_120514 102723427 Hs.583491 NR_120514 ENSG00000225209 LOC102723427 - uncharacterized LOC102723427 ncRNA 243-459 chr8 130791084 130791273 + 2 NA intron (NM_001115, intron 15 of 17) L2a|LINE|L2 249731 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 361-158 chr15 88731908 88732213 + 2 NA Intergenic AluJo|SINE|Alu -71376 NM_001369268 176 Hs.2159 NM_001135 ENSG00000157766 ACAN AGC1|AGCAN|CSPG1|CSPGCP|MSK16|SEDK|SSOAOD aggrecan protein-coding 277-272 chr3 135335449 135335679 + 2 NA Intergenic Intergenic 540304 NM_004441 2047 Hs.116092 NM_004441 ENSG00000154928 EPHB1 ELK|EPHT2|Hek6|NET EPH receptor B1 protein-coding 429-193 chr3 80403937 80404243 + 2 NA Intergenic MLT2B1|LTR|ERVL -360807 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 522-213 chr5 125214520 125214951 + 2 NA intron (NR_109882, intron 4 of 5) L1M5|LINE|L1 177904 NR_109882 101927421 Hs.121305 NR_109882 LOC101927421 - uncharacterized LOC101927421 ncRNA 444-56 chr12 76981503 76981861 + 2 NA Intergenic L1MA9|LINE|L1 83887 NM_203394 144455 Hs.416375 NM_203394 ENSG00000165891 E2F7 - E2F transcription factor 7 protein-coding 261-148 chr17 66827993 66828164 + 2 NA Intergenic HAL1b|LINE|L1 -7039 NM_145811 27091 Hs.278907 NM_014404 ENSG00000075429 CACNG5 - calcium voltage-gated channel auxiliary subunit gamma 5 protein-coding 290-247 chr20 52601200 52601465 + 2 NA Intergenic Intergenic -19506 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 309-284 chr2 190812131 190812350 + 2 NA Intergenic Intergenic -68581 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 226-255 chr4 60853864 60854002 + 2 NA Intergenic Intergenic -68686 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 331-509 chr7 117689164 117689455 + 2 NA Intergenic L2a|LINE|L2 -124633 NR_149084 111082987 Hs.583149 NR_149084 ENSG00000232661 CFTR-AS1 BGas CFTR antisense RNA 1 ncRNA 726-86 chr9 75605008 75605579 + 2 NA Intergenic Intergenic -285351 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 261-214 chr20 42894437 42894602 + 2 NA intron (NM_133170, intron 1 of 31) MIR|SINE|MIR -74224 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 253-109 chr12 91059142 91059317 + 2 NA promoter-TSS (NM_007035) promoter-TSS (NM_007035) -875 NM_007035 11081 Hs.125750 NM_007035 ENSG00000139330 KERA CNA2|KTN|SLRR2B keratocan protein-coding 284-375 chr7 34485627 34485811 + 2 NA intron (NR_033665, intron 2 of 3) intron (NR_033665, intron 2 of 3) -172499 NM_001300933 387129 Hs.652373 NM_207172 ENSG00000187258 NPSR1 ASRT2|GPR154|GPRA|NPSR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 568-201 chr8 126348028 126348421 + 2 NA Intergenic L1PB2|LINE|L1 22729 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 214 chr1 3587457 3587605 + 2 NA intron (NM_001409, intron 3 of 36) LTR62|LTR|ERVL 23977 NM_001409 1953 Hs.593645 NM_001409 ENSG00000162591 MEGF6 EGFL3 multiple EGF like domains 6 protein-coding 321-393 chr3 160812867 160813050 + 2 NA intron (NM_139245, intron 1 of 3) intron (NM_139245, intron 1 of 3) -29191 NM_001317911 151742 Hs.389027 NM_139245 ENSG00000163590 PPM1L PP2C-epsilon|PP2CE|PPM1-LIKE protein phosphatase, Mg2+/Mn2+ dependent 1L protein-coding 306-55 chr10 57753292 57753504 + 2 NA Intergenic L1MB4|LINE|L1 -448839 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 721-89 chr9 28935414 28935955 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) -46729 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 437-270 chr8 74519838 74520210 + 2 NA Intergenic L1MA3|LINE|L1 -28519 NR_049860 100847058 NR_049860 ENSG00000266502 MIR5681A - microRNA 5681a ncRNA 213-200 chr4 52116413 52116604 + 2 NA Intergenic L2b|LINE|L2 65204 NM_001346103 132671 Hs.527090 NM_145263 ENSG00000163071 SPATA18 Mieap|SPETEX1 spermatogenesis associated 18 protein-coding 529-75 chr16 61887337 61887816 + 2 NA intron (NM_001796, intron 3 of 11) MLT1B|LTR|ERVL-MaLR 148862 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 347-54 chr10 62688642 62688945 + 2 NA Intergenic Intergenic -115927 NM_032804 84890 Hs.99821 NM_032804 ENSG00000181915 ADO C10orf22 2-aminoethanethiol dioxygenase protein-coding 417-176 chr3 74714962 74715209 + 2 NA Intergenic Intergenic -193945 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 327-416 chr5 122661033 122661218 + 2 NA intron (NR_109881, intron 8 of 11) intron (NR_109881, intron 8 of 11) 69435 NR_109881 101927379 Hs.536399 NR_109881 ENSG00000251538 LINC02201 - long intergenic non-protein coding RNA 2201 ncRNA 382-339 chr5 128211015 128211249 + 2 NA Intergenic L1MA9|LINE|L1 127366 NM_001046 6558 Hs.162585 NM_001046 ENSG00000064651 SLC12A2 BSC|BSC2|NKCC1|PPP1R141 solute carrier family 12 member 2 protein-coding 717-52 chr21 16866288 16866818 + 2 NA Intergenic Intergenic 276316 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 207-197 chr3 110393572 110393727 + 2 NA Intergenic ERVL-int|LTR|ERVL 676310 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 456-131 chr18 2676713 2677134 + 2 NA intron (NM_015295, intron 5 of 47) L1MC4|LINE|L1 21036 NM_015295 23347 Hs.8118 NM_015295 ENSG00000101596 SMCHD1 BAMS|FSHD2 structural maintenance of chromosomes flexible hinge domain containing 1 protein-coding 648-137 chr7 79523489 79523997 + 2 NA Intergenic Intergenic 69783 NR_038344 100505881 Hs.31474 NR_038343 ENSG00000234456 MAGI2-AS3 - MAGI2 antisense RNA 3 ncRNA 268-62 chr11 20975514 20975681 + 2 NA intron (NM_201551, intron 12 of 18) (AT)n|Simple_repeat|Simple_repeat 306011 NM_006157 4745 Hs.657172 NM_006157 ENSG00000165973 NELL1 IDH3GL|NRP1 neural EGFL like 1 protein-coding 529-47 chr12 46906315 46906676 + 2 NA Intergenic L1MA4|LINE|L1 -80498 NM_018018 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 267-204 chr2 124138773 124138966 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 113582 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 288-179 chr2 40390062 40390330 + 2 NA intron (NM_001351483, intron 2 of 8) intron (NM_001351483, intron 2 of 8) 40108 NM_001112800 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 331-24 chr1 177867360 177867592 + 2 NA Intergenic L2a|LINE|L2 102446 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 489-60 chr12 102802841 102803173 + 2 NA Intergenic Intergenic 21392 NR_033855 283432 Hs.382110 NR_033855 ENSG00000258169 LINC00485 - long intergenic non-protein coding RNA 485 ncRNA 371-414 chr9 93412639 93412912 + 2 NA Intergenic L1M3c|LINE|L1 38833 NR_136235 158293 Hs.350364 NM_198841 ENSG00000188938 FAM120AOS C9orf10OS family with sequence similarity 120A opposite strand protein-coding 198-146 chr20 60872302 60872466 + 2 NA Intergenic Intergenic -206680 NR_109919 100506470 Hs.125674 NR_109919 ENSG00000229606 LINC01718 - long intergenic non-protein coding RNA 1718 ncRNA 233-362 chr7 136892331 136892505 + 2 NA intron (NM_001006629, intron 1 of 1) intron (NM_001006629, intron 1 of 1) -10749 NR_030165 574443 NR_030165 ENSG00000207597 MIR490 MIRN490|hsa-mir-490|miR-490 microRNA 490 ncRNA 319-591 chrX 147743039 147743206 + 2 NA Intergenic MamGyp-int|LTR|Gypsy 168695 NR_024503 100126270 Hs.561999 NR_024499 ENSG00000268066 FMR1-AS1 ASFMR1|FMR1-AS|FMR1AS|FMR4 FMR1 antisense RNA 1 ncRNA 233-81 chr12 129404083 129404228 + 2 NA intron (NM_133448, intron 3 of 8) MSTB|LTR|ERVL-MaLR 195554 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 571-170 chr8 77828568 77829038 + 2 NA Intergenic L1MA4A|LINE|L1 378106 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 165-60 chr2 194247628 194247722 + 2 NA Intergenic Intergenic -96594 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 316-163 chr14 40388687 40388975 + 2 NA Intergenic Intergenic -565880 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 311-84 chr11 87054972 87055163 + 2 NA intron (NR_033149, intron 1 of 13) L2c|LINE|L2 17133 NM_001168724 65084 Hs.188591 NM_022918 ENSG00000166575 TMEM135 PMP52 transmembrane protein 135 protein-coding 525-263 chr8 102877109 102877565 + 2 NA intron (NR_126338, intron 1 of 3) intron (NR_126338, intron 1 of 3) 13066 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 311-465 chr7 28228166 28228343 + 2 NA intron (NR_034097, intron 3 of 3) intron (NR_034097, intron 3 of 3) -47459 NM_175061 221895 Hs.368944 NM_175061 ENSG00000153814 JAZF1 TIP27|ZNF802 JAZF zinc finger 1 protein-coding 402-55 chr11 103857737 103858071 + 2 NA Intergenic Intergenic 7998 NR_039842 100616457 NR_039842 ENSG00000264200 MIR4693 - microRNA 4693 ncRNA 527-97 chr15 71058600 71059106 + 2 NA Intergenic L1ME2|LINE|L1 -82596 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 355-265 chr2 193325852 193326139 + 2 NA Intergenic L1ME1|LINE|L1 576150 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 497-227 chr5 52773264 52773659 + 2 NA Intergenic Intergenic -14455 NM_181501 3672 Hs.644352 NM_181501 ENSG00000213949 ITGA1 CD49a|VLA1 integrin subunit alpha 1 protein-coding 126-65 chr9 85962869 85962938 + 2 NA intron (NM_024635, intron 6 of 22) intron (NM_024635, intron 6 of 22) 21374 NM_001321882 60560 Hs.436098 NM_021929 ENSG00000135040 NAA35 EGAP|MAK10|MAK10P|bA379P1.1 N(alpha)-acetyltransferase 35, NatC auxiliary subunit protein-coding 316-30 chr1 174875653 174875876 + 2 NA intron (NM_001035230, intron 1 of 3) intron (NM_001035230, intron 1 of 3) 246 NM_001035230 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 304-168 chr15 81431813 81431972 + 2 NA intron (NR_120365, intron 6 of 6) L1MC2|LINE|L1 -57679 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 346-320 chr3 84800266 84800452 + 2 NA intron (NR_033860, intron 8 of 20) intron (NR_033860, intron 8 of 20) 69216 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 283-413 chr7 41480867 41481115 + 2 NA Intergenic L1MC4|LINE|L1 -212928 NR_027119 285954 Hs.656869 NR_027118 ENSG00000224116 INHBA-AS1 - INHBA antisense RNA 1 ncRNA 331-128 chr12 127854886 127855148 + 2 NA Intergenic Intergenic -26600 NR_033987 400087 Hs.524846 NR_033987 ENSG00000256597 LINC02393 - long intergenic non-protein coding RNA 2393 ncRNA 235-168 chr2 64699350 64699526 + 2 NA Intergenic Intergenic -45525 NM_014755 9792 Hs.591569 NM_014755 ENSG00000179833 SERTAD2 Sei-2|TRIP-Br2|TRIPBR2 SERTA domain containing 2 protein-coding 216-345 chr8 138702241 138702386 + 2 NA intron (NM_152888, intron 31 of 64) intron (NM_152888, intron 31 of 64) -204583 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 156-35 chr15 39717398 39717526 + 2 NA intron (NM_152597, intron 9 of 11) intron (NM_152597, intron 9 of 11) 65379 NM_001324338 161835 Hs.129598 NM_152597 ENSG00000150667 FSIP1 HSD10 fibrous sheath interacting protein 1 protein-coding 358-53 chr10 84095348 84095671 + 2 NA Intergenic Intergenic -44000 NM_014394 27069 Hs.352656 NM_014394 ENSG00000165678 GHITM DERP2|HSPC282|MICS1|My021|PTD010|TMBIM5 growth hormone inducible transmembrane protein protein-coding 445-157 chr21 19773988 19774362 + 2 NA Intergenic Intergenic 125580 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 310-329 chr3 70229384 70229687 + 2 NA intron (NM_001364677, intron 2 of 3) MLT1J2|LTR|ERVL-MaLR 83103 NM_001364677 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 338-259 chr2 61112776 61113081 + 2 NA intron (NM_001129993, intron 16 of 21) L1ME1|LINE|L1 32047 NR_036496 339803 Hs.252433 NR_036496 ENSG00000212978 LOC339803 - uncharacterized LOC339803 ncRNA 463-253 chr6 66357340 66357680 + 2 NA Intergenic Intergenic 569631 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 395-312 chr7 48120819 48121154 + 2 NA Intergenic MER9a3|LTR|ERVK 31721 NM_001287429 7378 Hs.488240 NM_003364 ENSG00000183696 UPP1 UDRPASE|UP|UPASE|UPP uridine phosphorylase 1 protein-coding 589-133 chr5 145456630 145457178 + 2 NA Intergenic MIRc|SINE|MIR 378438 NM_205846 153768 Hs.314261 NM_138492 ENSG00000186314 PRELID2 - PRELI domain containing 2 protein-coding 223-291 chr5 153768519 153768701 + 2 NA intron (NM_000827, intron 12 of 15) intron (NM_000827, intron 12 of 15) 130377 NR_146729 105378238 Hs.590229 NR_146729 ENSG00000251183 LINC01861 - long intergenic non-protein coding RNA 1861 ncRNA 175-135 chr5 108785962 108786077 + 2 NA intron (NM_001308038, intron 3 of 7) HAL1b|LINE|L1 37071 NM_001308038 2241 Hs.107418 NM_005246 ENSG00000151422 FER PPP1R74|TYK3|p94-Fer FER tyrosine kinase protein-coding 685-58 chr20 5773804 5774454 + 2 NA TTS (NM_001303479) TTS (NM_001303479) 23728 NM_001303479 149840 Hs.529340 NM_152504 ENSG00000171984 SHLD1 C20orf196|RINN3 shieldin complex subunit 1 protein-coding 273-242 chr2 167463774 167464012 + 2 NA Intergenic Intergenic 276521 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 341-340 chr3 99497023 99497281 + 2 NA Intergenic L1MA8|LINE|L1 -141442 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 266-394 chr7 35561298 35561493 + 2 NA Intergenic L1M|LINE|L1 133740 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 746-2 chr1 79057158 79057605 + 2 NA Intergenic L1PA17|LINE|L1 -50651 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 265-292 chr5 6107303 6107452 + 2 NA Intergenic Intergenic 229915 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 365-12 chr1 89446728 89447001 + 2 NA Intergenic L1M1|LINE|L1 39185 NR_003133 400759 Hs.661968 NR_003133 ENSG00000225492 GBP1P1 - guanylate binding protein 1 pseudogene 1 pseudo 366-262 chr22 33742020 33742249 + 2 NA intron (NR_038950, intron 4 of 6) MIR|SINE|MIR 17148 NR_038949 100506195 Hs.658872 NR_038949 ENSG00000224973 LARGE-AS1 - LARGE antisense RNA 1 ncRNA 430-171 chr20 11244031 11244303 + 2 NA Intergenic Intergenic 29216 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 603-80 chr2 27930709 27931310 + 2 NA intron (NM_199193, intron 4 of 13) intron (NM_199193, intron 4 of 13) -39895 NR_028308 100302650 Hs.729719 NR_028308 BABAM2-AS1 BRE-AS1 BABAM2 antisense RNA 1 ncRNA 424-22 chr10 26032540 26032864 + 2 NA intron (NM_017433, intron 10 of 34) intron (NM_017433, intron 10 of 34) 98473 NM_017433 53904 Hs.662630 NM_017433 ENSG00000095777 MYO3A DFNB30 myosin IIIA protein-coding 444-189 chr5 15760955 15761177 + 2 NA intron (NM_001278317, intron 2 of 3) intron (NM_001278317, intron 2 of 3) -146064 NR_109945 101929472 Hs.662664 NR_109945 CTD-2350J17.1 - uncharacterized LOC101929472 ncRNA 302-434 chr8 29965287 29965483 + 2 NA Intergenic L1MEd|LINE|L1 -8037 NR_036104 100422876 NR_036104 ENSG00000264788 MIR3148 mir-3148 microRNA 3148 ncRNA 593-32 chr12 27402314 27402804 + 2 NA intron (NM_001248003, intron 10 of 14) intron (NM_001248003, intron 10 of 14) 44075 NR_109975 101928646 Hs.434269 NR_109975 ENSG00000245311 ARNTL2-AS1 - ARNTL2 antisense RNA 1 ncRNA 417-125 chr2 12285069 12285378 + 2 NA intron (NR_110196, intron 3 of 5) MER45R|DNA|hAT-Tip100 86093 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 341-432 chr5 35566178 35566500 + 2 NA Intergenic L2a|LINE|L2 -51524 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 409-87 chr14_GL000225v1_random 138305 138649 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 183-63 chr17 77718065 77718220 + 2 NA Intergenic L1ME1|LINE|L1 10417 NR_104134 100132174 Hs.640110 NR_104134 ENSG00000267790 LINC01987 - long intergenic non-protein coding RNA 1987 ncRNA 497-114 chr2 33862915 33863221 + 2 NA intron (NR_126403, intron 2 of 5) intron (NR_126403, intron 2 of 5) -134851 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 162-106 chr5 131324034 131324116 + 2 NA intron (NM_020240, intron 2 of 5) intron (NM_020240, intron 2 of 5) 60066 NM_020240 56990 Hs.508829 NM_020240 ENSG00000158985 CDC42SE2 SPEC2 CDC42 small effector 2 protein-coding 141-47 chr21 22757971 22758097 + 2 NA Intergenic Intergenic -321250 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 949-4 chr14 62740778 62741526 + 2 NA intron (NM_172375, intron 9 of 9) intron (NM_172375, intron 9 of 9) 304306 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 197-186 chr6 133063759 133063887 + 2 NA Intergenic Intergenic -24257 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 368-110 chr12 66142166 66142442 + 2 NA intron (NM_016056, intron 5 of 6) intron (NM_016056, intron 5 of 6) 11553 NR_125724 103625681 Hs.504820 NR_125724 ENSG00000239335 LLPH-DT LLPH-AS1 LLPH divergent transcript ncRNA 386-95 chr14 52263068 52263396 + 2 NA Intergenic Intergenic -4466 NM_001281469 5729 Hs.306831 NM_000953 ENSG00000168229 PTGDR AS1|ASRT1|DP|DP1|PTGDR1 prostaglandin D2 receptor protein-coding 368-183 chr16 80228667 80228891 + 2 NA intron (NR_120307, intron 2 of 5) L2a|LINE|L2 -311955 NM_001305017 83657 Hs.98849 NM_130897 ENSG00000168589 DYNLRB2 DNCL2B|DNLC2B|ROBLD2 dynein light chain roadblock-type 2 protein-coding 303-328 chr4 120473347 120473596 + 2 NA Intergenic Intergenic -406623 NM_002358 4085 Hs.591697 NM_002358 ENSG00000164109 MAD2L1 HSMAD2|MAD2 mitotic arrest deficient 2 like 1 protein-coding 497-209 chr4 156234074 156234499 + 2 NA Intergenic L1MA8|LINE|L1 -280420 NM_001334 1519 Hs.75262 NM_001334 ENSG00000256043 CTSO CTSO1 cathepsin O protein-coding 305-310 chr20 52739377 52739654 + 2 NA Intergenic L2a|LINE|L2 118677 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 229-5 chr1 49999027 49999203 + 2 NA intron (NM_001323575, intron 1 of 12) L1PBa|LINE|L1 24839 NM_001323574 84871 Hs.551844 NM_032785 ENSG00000186094 AGBL4 CCP6 ATP/GTP binding protein like 4 protein-coding 128-43 chr3 181594080 181594159 + 2 NA intron (NR_075091, intron 4 of 7) L1ME4a|LINE|L1 -16215 NR_075090 347689 Hs.654932 NR_004053 SOX2-OT NCRNA00043|SOX2OT SOX2 overlapping transcript ncRNA 161-62 chr2 217588605 217588740 + 2 NA intron (NR_026597, intron 2 of 12) L1MEf|LINE|L1 167921 NR_026597 729582 Hs.572788 NR_026597 DIRC3 - disrupted in renal carcinoma 3 ncRNA 316-445 chr5 87872436 87872625 + 2 NA Intergenic Intergenic 210488 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 252-143 chr16 35622494 35622675 + 2 NA Intergenic MER57A-int|LTR|ERV1 -115414 NR_034019 100130700 Hs.97712 NR_034018 TP53TG3HP - TP53 target 3 family member H, pseudogene pseudo 200-146 chr2 205914163 205914350 + 2 NA Intergenic Intergenic 171918 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 364-386 chr6 102604381 102604679 + 2 NA Intergenic Intergenic 1205545 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 348-325 chr3 144250366 144250615 + 2 NA Intergenic Intergenic 277409 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 208-222 chr5 166563261 166563411 + 2 NA Intergenic Intergenic 363034 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 271-215 chr2 170923268 170923516 + 2 NA Intergenic LTR2752|LTR|ERV1 -5085 NM_001201428 26003 Hs.431317 NM_015530 ENSG00000115806 GORASP2 GOLPH6|GRASP55|GRS2|p59 golgi reassembly stacking protein 2 protein-coding 368-79 chr11 50445848 50446060 + 2 NA Intergenic HERVK11-int|LTR|ERVK 36807 NR_024504 646813 Hs.684179 NR_024504 LOC646813 - DExH-box helicase 9 pseudogene pseudo 353-294 chr21 18555380 18555603 + 2 NA Intergenic L1M4|LINE|L1 130673 NR_036166 100422920 NR_036166 ENSG00000265841 MIR548X - microRNA 548x ncRNA 162-45 chr18 1671298 1671425 + 2 NA Intergenic Intergenic -311732 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 315-113 chr12 133145216 133145409 + 2 NA intron (NM_015394, intron 2 of 4) intron (NM_015394, intron 2 of 4) 14685 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 605-127 chr9 25422418 25422953 + 2 NA Intergenic Intergenic 256173 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 232-258 chr4 6485734 6485905 + 2 NA intron (NM_001206994, intron 2 of 9) L1MEc|LINE|L1 -13205 NM_001363388 5522 Hs.479069 NM_020416 ENSG00000074211 PPP2R2C B55-GAMMA|B55gamma|IMYPNO|IMYPNO1|PR52|PR55G protein phosphatase 2 regulatory subunit Bgamma protein-coding 351-368 chr5 9839803 9840082 + 2 NA intron (NR_027112, intron 4 of 12) intron (NR_027112, intron 4 of 12) -14435 NR_147004 105374648 Hs.158853 NR_147004 LINC02221 - long intergenic non-protein coding RNA 2221 ncRNA 328-127 chr13 40295231 40295437 + 2 NA Intergenic Intergenic -74832 NR_033877 400123 Hs.577960 NR_033877 ENSG00000215483 LINC00548 - long intergenic non-protein coding RNA 548 ncRNA 219-53 chr11 79799224 79799343 + 2 NA Intergenic MIR|SINE|MIR -358253 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 299-214 chr2 108018725 108018940 + 2 NA Intergenic Intergenic 32308 NM_001305006 60482 Hs.287758 NM_021815 ENSG00000115665 SLC5A7 CHT|CHT1|CMS20|HMN7A solute carrier family 5 member 7 protein-coding 256-16 chr1 93464148 93464365 + 2 NA intron (NM_001024948, intron 1 of 13) L1MB3|LINE|L1 16125 NM_001024948 54874 Hs.134060 NM_017737 ENSG00000137942 FNBP1L C1orf39|TOCA1 formin binding protein 1 like protein-coding 278-176 chr18 28091469 28091724 + 2 NA intron (NM_001792, intron 2 of 15) intron (NM_001792, intron 2 of 15) -54955 NM_001308176 1000 Hs.464829 NM_001792 ENSG00000170558 CDH2 CD325|CDHN|CDw325|NCAD cadherin 2 protein-coding 298-218 chr2 79480303 79480558 + 2 NA Intergenic Intergenic 20414 NR_110289 101927987 Hs.574704 NR_110289 ENSG00000229385 LOC101927987 - uncharacterized LOC101927987 ncRNA 337-509 chr7 3373648 3373821 + 2 NA intron (NM_152744, intron 1 of 44) L1ME4a|LINE|L1 72482 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 362-37 chr1 224905394 224905717 + 2 NA Intergenic Intergenic -24099 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 252-209 chr2 117683595 117683801 + 2 NA Intergenic L1PA17|LINE|L1 -130993 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 389-26 chr10 29096943 29097255 + 2 NA Intergenic MIRb|SINE|MIR -191971 NM_032517 84569 Hs.558572 NM_032517 ENSG00000120563 LYZL1 KAAG648|LYC2|LYZD1|PRO1278|bA534G20.1 lysozyme like 1 protein-coding 439-144 chr2 145933413 145933781 + 2 NA Intergenic Intergenic -653460 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 307-254 chr2 169071737 169071987 + 2 NA promoter-TSS (NM_001142270) promoter-TSS (NM_001142270) -713 NM_001142270 10170 Hs.179608 NM_005771 ENSG00000073737 DHRS9 3-alpha-HSD|3ALPHA-HSD|RDH-E2|RDH-TBE|RDH15|RDHL|RDHTBE|RETSDR8|SDR9C4 dehydrogenase/reductase 9 protein-coding 195-97 chr19 52077404 52077574 + 2 NA intron (NM_001369827, intron 4 of 6) MIR|SINE|MIR 16782 NM_001369828 284371 Hs.665751 NM_001136499 ENSG00000197608 ZNF841 - zinc finger protein 841 protein-coding 136-61 chr3 81353734 81353816 + 2 NA Intergenic Intergenic 359907 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 418-89 chr16 48670818 48671181 + 2 NA Intergenic Intergenic -60819 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 438-26 chr1 227687957 227688386 + 2 NA Intergenic L1M3de|LINE|L1 9536 NR_036753 401983 Hs.681816 NR_036753 ZNF847P gm127 zinc finger protein 847, pseudogene pseudo 198-65 chr14 62996300 62996478 + 2 NA intron (NM_139318, intron 4 of 10) intron (NM_139318, intron 4 of 10) 49069 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 189-130 chr3 98319656 98319804 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -34124 NM_001005517 403278 Hs.554710 NM_001005517 ENSG00000196098 OR5K4 - olfactory receptor family 5 subfamily K member 4 protein-coding 278-227 chr2 118889677 118889850 + 2 NA Intergenic L1M8|LINE|L1 -41580 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 388-144 chr19 43965521 43965767 + 2 NA intron (NM_013359, intron 5 of 5) intron (NM_013359, intron 5 of 5) 14399 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 381-160 chr19 4993252 4993528 + 2 NA intron (NM_001370094, intron 1 of 10) AluSz6|SINE|Alu 24277 NM_001370093 23030 Hs.654816 NM_015015 ENSG00000127663 KDM4B JMJD2B|TDRD14B lysine demethylase 4B protein-coding 368-242 chr2 139070294 139070508 + 2 NA Intergenic Intergenic 173077 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 330-357 chr3 107173979 107174152 + 2 NA intron (NR_028303, intron 1 of 3) intron (NR_028303, intron 1 of 3) 66573 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 432-165 chr21 43367037 43367331 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -4835 NR_131902 101928399 Hs.517319 NR_131902 ENSG00000237989 LINC01679 TCONS_00029157 long intergenic non-protein coding RNA 1679 ncRNA 233-299 chr5 54466580 54466743 + 2 NA Intergenic L1MEi|LINE|L1 10962 NM_006308 8988 Hs.41707 NM_006308 ENSG00000169271 HSPB3 DHMN2C|HMN2C|HSPL27 heat shock protein family B (small) member 3 protein-coding 306-53 chr10 33148132 33148344 + 2 NA Intergenic Intergenic -31431 NR_160030 101929447 NR_160030 IATPR TCONS_00018476|linc-ITGB1 ITGB1 adjacent tumor promoting lncRNA ncRNA 199-86 chr18 4936433 4936569 + 2 NA Intergenic L1MEc|LINE|L1 -144681 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 371-255 chr3 125632339 125632637 + 2 NA Intergenic Intergenic -36991 NM_022776 114885 Hs.477440 NM_022776 ENSG00000144909 OSBPL11 ORP-11|ORP11|OSBP12|TCCCIA00292 oxysterol binding protein like 11 protein-coding 305-59 chr10 43468254 43468430 + 2 NA intron (NM_001355446, intron 2 of 4) Tigger1|DNA|TcMar-Tigger 31231 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 261-47 chr10 111885933 111886126 + 2 NA Intergenic MSTA1|LTR|ERVL-MaLR 297736 NM_001244949 57678 Hs.42586 NM_020918 ENSG00000119927 GPAM GPAT|GPAT1 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 246-360 chr7 15819063 15819247 + 2 NA Intergenic Intergenic 130777 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 386-10 chr1 108659476 108659826 + 2 NA intron (NM_001102592, intron 2 of 7) intron (NM_001102592, intron 2 of 7) 1442 NM_001102592 113802 Hs.7962 NM_144584 ENSG00000162639 HENMT1 C1orf59|HEN1 HEN methyltransferase 1 protein-coding 367-290 chr3 110237219 110237525 + 2 NA Intergenic Intergenic 634544 NR_039647 100616129 NR_039647 ENSG00000265956 MIR4445 - microRNA 4445 ncRNA 269-434 chrX 11406744 11406965 + 2 NA intron (NR_109776, intron 1 of 14) intron (NR_109776, intron 1 of 14) 20964 NM_001287242 395 Hs.435291 NM_001174 ENSG00000047648 ARHGAP6 RHOGAP6|RHOGAPX-1 Rho GTPase activating protein 6 protein-coding 276-37 chr1 240052326 240052505 + 2 NA Intergenic Intergenic -39468 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 254-261 chr3 187755447 187755683 + 2 NA Intergenic L1ME4a|LINE|L1 -10097 NM_001706 604 Hs.478588 NM_001706 ENSG00000113916 BCL6 BCL5|BCL6A|LAZ3|ZBTB27|ZNF51 BCL6 transcription repressor protein-coding 257-169 chr19 37590506 37590736 + 2 NA intron (NM_016536, intron 1 of 3) L1MC4|LINE|L1 4125 NM_001321272 51276 Hs.590944 NM_016536 ENSG00000180479 ZNF571 HSPC059 zinc finger protein 571 protein-coding 411-11 chr1 177835839 177836233 + 2 NA Intergenic Intergenic 133886 NM_033127 89866 Hs.149540 NM_033127 ENSG00000120341 SEC16B LZTR2|PGPR-p117|RGPR|RGPR-p117|SEC16S SEC16 homolog B, endoplasmic reticulum export factor protein-coding 257-192 chr2 77094003 77094208 + 2 NA intron (NR_146416, intron 1 of 1) L1M2|LINE|L1 108140 NR_110284 101927907 Hs.382185 NR_110284 ENSG00000234653 LOC101927907 - uncharacterized LOC101927907 ncRNA 456-341 chr9 75936606 75936924 + 2 NA intron (NR_120409, intron 2 of 19) Tigger1|DNA|TcMar-Tigger 46092 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 524-109 chr2 39977539 39977868 + 2 NA intron (NR_038441, intron 2 of 4) MIR|SINE|MIR 60069 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 338-18 chr1 98337140 98337398 + 2 NA Intergenic Intergenic 126558 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 370-453 chr8 128311125 128311486 + 2 NA Intergenic Intergenic 161189 NR_031613 100302281 NR_031613 ENSG00000221261 MIR1208 MIRN1208|hsa-mir-1208 microRNA 1208 ncRNA 396-367 chr9 16210753 16211065 + 2 NA intron (NM_001364979, intron 3 of 3) L1ME3A|LINE|L1 42198 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 358-147 chr16 61401655 61401916 + 2 NA Intergenic Intergenic -346019 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 558-191 chr6 133603352 133603714 + 2 NA intron (NR_109982, intron 4 of 8) MLT2B4|LTR|ERVL -217614 NR_027030 154089 Hs.126165 NR_027030 LINC01312 - long intergenic non-protein coding RNA 1312 ncRNA 325-151 chr13 58490916 58491191 + 2 NA Intergenic L1ME4b|LINE|L1 -257936 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 459-288 chr7 115745983 115746300 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -164700 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 268-77 chr12 17863641 17863816 + 2 NA Intergenic Intergenic 190429 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 345-151 chr14 57166229 57166503 + 2 NA Intergenic AluSx1|SINE|Alu 102539 NM_006544 10640 Hs.743987 NM_006544 ENSG00000070367 EXOC5 HSEC10|PRO1912|SEC10|SEC10L1|SEC10P exocyst complex component 5 protein-coding 401-104 chr15 70145231 70145552 + 2 NA Intergenic Intergenic -47474 NM_001282979 7090 Hs.287362 NM_005078 ENSG00000140332 TLE3 ESG|ESG3|GRG3|HsT18976 TLE family member 3, transcriptional corepressor protein-coding 201-115 chr2 17157135 17157240 + 2 NA Intergenic Intergenic 361253 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 365-435 chrX 56086466 56086736 + 2 NA intron (NM_001324104, intron 2 of 6) intron (NM_001324104, intron 2 of 6) -145755 NM_001324102 11279 Hs.646614 NM_007250 ENSG00000102349 KLF8 BKLF3|ZNF741 Kruppel like factor 8 protein-coding 575-172 chr6 70680140 70680513 + 2 NA intron (NM_001281440, intron 1 of 10) L1M5|LINE|L1 11796 NM_001281440 60682 Hs.485717 NM_021940 ENSG00000112305 SMAP1 SMAP-1 small ArfGAP 1 protein-coding 421-224 chr4 141192627 141192984 + 2 NA Intergenic L2a|LINE|L2 -28090 NM_001292002 27309 Hs.120766 NM_014487 ENSG00000109445 ZNF330 HSA6591|NOA36 zinc finger protein 330 protein-coding 189-81 chr19 39447334 39447447 + 2 NA intron (NM_001111020, intron 2 of 29) intron (NM_001111020, intron 2 of 29) 1742 NM_003169 6829 Hs.631604 NM_003169 ENSG00000196235 SUPT5H SPT5|SPT5H|Tat-CT1 SPT5 homolog, DSIF elongation factor subunit protein-coding 131-9 chr10 39431260 39431376 + 2 NA Intergenic ALR/Alpha|Satellite|centr 734722 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 575-62 chr15 98224034 98224504 + 2 NA Intergenic Intergenic 107289 NR_146566 105371011 NR_146566 LINC02351 - long intergenic non-protein coding RNA 2351 ncRNA 451-60 chr14 45969926 45970222 + 2 NA Intergenic Intergenic -94085 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 433-221 chr5 41457020 41457393 + 2 NA intron (NM_001005473, intron 1 of 2) intron (NM_001005473, intron 1 of 2) 53395 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 366-281 chr3 106530540 106530798 + 2 NA Intergenic L1M2|LINE|L1 -661268 NR_135810 868 Hs.430589 NM_170662 ENSG00000114423 CBLB Cbl-b|Nbla00127|RNF56 Cbl proto-oncogene B protein-coding 368-107 chr12 58790500 58790860 + 2 NA intron (NR_126341, intron 1 of 1) L1MB7|LINE|L1 -8964 NR_120452 101927653 Hs.130744 NR_120452 ENSG00000257259 LINC02388 - long intergenic non-protein coding RNA 2388 ncRNA 427-18 chr10 34098793 34099063 + 2 NA Intergenic LTR60B|LTR|ERV1 -326248 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 224-313 chr8 50484357 50484562 + 2 NA intron (NR_135797, intron 8 of 20) AluSq2|SINE|Alu 320328 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 319-423 chr5 114795177 114795418 + 2 NA Intergenic MIR3|SINE|MIR -21884 NR_130785 101927078 Hs.160027 NR_130785 LOC101927078 - uncharacterized LOC101927078 ncRNA 269-197 chr2 72180328 72180531 + 2 NA intron (NR_135774, intron 19 of 19) intron (NR_135774, intron 19 of 19) -32567 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 423-39 chr10 115678182 115678445 + 2 NA intron (NM_207303, intron 26 of 28) intron (NM_207303, intron 26 of 28) 516476 NR_145811 109623470 NR_145811 SNORD158 - small nucleolar RNA, C/D box 158 snoRNA 236-194 chr2 214266681 214266901 + 2 NA intron (NR_047660, intron 14 of 14) L1MA7|LINE|L1 -144263 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 279-214 chr2 234257097 234257357 + 2 NA Intergenic Intergenic 197368 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 201-92 chr15 93244498 93244674 + 2 NA Intergenic Intergenic 38520 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 159-33 chr17 14744900 14744996 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -269857 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 255-297 chr4 72229475 72229710 + 2 NA Intergenic L2a|LINE|L2 190460 NM_001144756 10886 Hs.99231 NM_004885 ENSG00000056291 NPFFR2 GPR74|HLWAR77|NPFF2|NPGPR neuropeptide FF receptor 2 protein-coding 342-395 chr5 45472730 45472983 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 223524 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 204-144 chr2 75494332 75494485 + 2 NA intron (NM_032181, intron 3 of 3) MLT1F2|LTR|ERVL-MaLR -29660 NR_110281 101927884 Hs.671110 NR_110281 ENSG00000231172 LOC101927884 - uncharacterized LOC101927884 ncRNA 357-364 chr5 143862816 143863069 + 2 NA Intergenic Intergenic 50781 NM_021182 57824 Hs.158320 NM_021182 ENSG00000158497 HMHB1 HB-1|HB-1Y|HLA-HB1 histocompatibility minor HB-1 protein-coding 339-513 chr6 165910684 165910929 + 2 NA Intergenic MIRb|SINE|MIR -76745 NR_027284 441177 Hs.708964 NM_001013720 ENSG00000281832 LINC00602 - long intergenic non-protein coding RNA 602 ncRNA 448-24 chr1 237982113 237982447 + 2 NA Intergenic Intergenic -91358 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 349-152 chr14 43841799 43842111 + 2 NA Intergenic L1MB1|LINE|L1 665328 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 291-135 chr14 72225867 72226058 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) -290858 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 298-126 chr14 80164275 80164452 + 2 NA Intergenic Intergenic -47056 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 534-106 chr2 17347903 17348314 + 2 NA Intergenic Intergenic 170332 NM_001099218 729475 Hs.515802 NM_001099218 ENSG00000214842 RAD51AP2 - RAD51 associated protein 2 protein-coding 283-351 chr5 23859835 23860113 + 2 NA Intergenic Intergenic -91374 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 237-209 chr20 37587301 37587458 + 2 NA Intergenic L1MB7|LINE|L1 35740 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 710-81 chr6 40152041 40152535 + 2 NA Intergenic Intergenic 203718 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 403-10 chr1 106282012 106282386 + 2 NA Intergenic L1MD2|LINE|L1 -253946 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 290-255 chr21 21015453 21015626 + 2 NA intron (NM_001352595, intron 1 of 14) Tigger1|DNA|TcMar-Tigger 17130 NM_004540 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 231-385 chrX 84717193 84717371 + 2 NA Intergenic Intergenic -214829 NM_001177479 139324 Hs.559546 NM_144657 ENSG00000165259 HDX CXorf43|D030011N01Rik highly divergent homeobox protein-coding 347-550 chr9 80110680 80111005 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 135819 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 284-303 chr4 178525776 178526040 + 2 NA Intergenic Intergenic -617972 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 276-461 chr8 118852839 118853031 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 98950 NM_002546 4982 Hs.81791 NM_002546 ENSG00000164761 TNFRSF11B OCIF|OPG|PDB5|TR1 TNF receptor superfamily member 11b protein-coding 367 chr1 2879658 2879924 + 2 NA Intergenic Intergenic -78923 NM_001242672 100287898 Hs.632363 NM_001242672 ENSG00000215912 TTC34 - tetratricopeptide repeat domain 34 protein-coding 325-122 chr12 16852118 16852419 + 2 NA Intergenic Intergenic -136479 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 212-194 chr21 29769066 29769252 + 2 NA intron (NM_000830, intron 1 of 16) intron (NM_000830, intron 1 of 16) 20984 NR_027021 642976 Hs.473554 NR_027021 GRIK1-AS1 C21orf9|GRIK1-AS|GRIK1AS|NCRNA00110 GRIK1 antisense RNA 1 ncRNA 497-304 chr9 110868045 110868450 + 2 NA Intergenic Intergenic 139985 NM_001369398 4593 Hs.521653 NM_005592 ENSG00000030304 MUSK CMS9|FADS|FADS1 muscle associated receptor tyrosine kinase protein-coding 416-134 chr16 23987567 23987927 + 2 NA intron (NM_002738, intron 2 of 16) intron (NM_002738, intron 2 of 16) 151764 NM_212535 5579 Hs.460355 NM_002738 ENSG00000166501 PRKCB PKC-beta|PKCB|PKCI(2)|PKCbeta|PRKCB1|PRKCB2 protein kinase C beta protein-coding 419-242 chr5 166923409 166923737 + 2 NA intron (NR_108020, intron 1 of 2) intron (NR_108020, intron 1 of 2) 2797 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 394-121 chr16 18829819 18830148 + 2 NA exon (NM_015092, exon 53 of 63) exon (NM_015092, exon 53 of 63) -28434 NM_015161 23204 Hs.634882 NM_015161 ENSG00000170540 ARL6IP1 AIP1|ARL6IP|ARMER|SPG61 ADP ribosylation factor like GTPase 6 interacting protein 1 protein-coding 959-28 chr6 159570135 159570756 + 2 NA Intergenic Intergenic 122796 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 148-52 chr3 5740008 5740091 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -489794 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 358-140 chr16 9933323 9933629 + 2 NA intron (NM_001134408, intron 3 of 13) X7A_LINE|LINE|CR1 248591 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 307-133 chr14 45565796 45566042 + 2 NA Intergenic L2b|LINE|L2 149683 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 535-126 chr2 73407364 73407776 + 2 NA intron (NM_015120, intron 1 of 22) L1MA9|LINE|L1 21812 NM_015120 7840 Hs.184720 NM_015120 ENSG00000116127 ALMS1 ALSS ALMS1 centrosome and basal body associated protein protein-coding 771-40 chr2 14536073 14536578 + 2 NA Intergenic Intergenic -96392 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 447-89 chr16 31919654 31919968 + 2 NA Intergenic Intergenic 46004 NM_003414 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 196-96 chr16 78785490 78785674 + 2 NA intron (NM_001291997, intron 7 of 7) MER63C|DNA|hAT-Blackjack 685928 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 503-259 chr7 34075919 34076361 + 2 NA intron (NM_133468, intron 12 of 15) intron (NM_133468, intron 12 of 15) 170601 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 367-239 chr2 214766785 214767054 + 2 NA intron (NM_001282548, intron 1 of 5) L1PREC2|LINE|L1 42764 NR_104216 580 Hs.591642 NM_000465 ENSG00000138376 BARD1 - BRCA1 associated RING domain 1 protein-coding 233-346 chr6 140857120 140857288 + 2 NA Intergenic Intergenic 173390 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 218-228 chr3 169066935 169067090 + 2 NA Intergenic Intergenic 78511 NM_001366472 2122 Hs.656395 NM_004991 ENSG00000085276 MECOM AML1-EVI-1|EVI1|KMT8E|MDS1|MDS1-EVI1|PRDM3|RUSAT2 MDS1 and EVI1 complex locus protein-coding 491-197 chr4 179111622 179111956 + 2 NA Intergenic Intergenic -1203853 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 468-125 chr18 53878258 53878652 + 2 NA Intergenic Intergenic -297396 NR_110800 101928167 Hs.382012 NR_110800 ENSG00000260433 LINC01917 - long intergenic non-protein coding RNA 1917 ncRNA 362-437 chr8 81350072 81350371 + 2 NA Intergenic Intergenic 69685 NM_001444 2171 Hs.408061 NM_001444 ENSG00000164687 FABP5 E-FABP|EFABP|KFABP|PA-FABP|PAFABP fatty acid binding protein 5 protein-coding 347-317 chr3 117712415 117712720 + 2 NA Intergenic Intergenic -21642 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 261-66 chr11 81334006 81334228 + 2 NA Intergenic L1M5|LINE|L1 556719 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 325-77 chr10 91108092 91108334 + 2 NA Intergenic L1PA3|LINE|L1 44867 NR_002779 119369 Hs.441287 NR_002779 NUDT9P1 C10orf98|bA56M3.1 nudix hydrolase 9 pseudogene 1 pseudo 356-63 chr10 93158937 93159149 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 85150 NM_000783 1592 Hs.150595 NM_000783 ENSG00000095596 CYP26A1 CP26|CYP26|P450RAI|P450RAI1 cytochrome P450 family 26 subfamily A member 1 protein-coding 195-91 chr18 13992421 13992594 + 2 NA Intergenic MIR|SINE|MIR -76800 NM_001291911 4158 Hs.248144 NM_000529 ENSG00000185231 MC2R ACTHR melanocortin 2 receptor protein-coding 362-152 chr14 69780421 69780733 + 2 NA intron (NM_003049, intron 2 of 4) intron (NM_003049, intron 2 of 4) -12864 NR_029378 100289511 Hs.729250 NR_029378 LOC100289511 - uncharacterized LOC100289511 ncRNA 602-59 chr2 80118007 80118453 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 186522 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 281-54 chr10 120796062 120796300 + 2 NA intron (NR_033850, intron 1 of 2) L1MC4|LINE|L1 54998 NR_033850 283089 Hs.568750 NR_033850 ENSG00000227165 WDR11-AS1 - WDR11 antisense RNA 1 ncRNA 304-519 chr8 90435200 90435361 + 2 NA Intergenic Intergenic 170783 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 333-196 chr17 74085692 74085896 + 2 NA Intergenic MamGypLTR3a|LTR|Gypsy -117884 NM_001035258 6169 Hs.380953 NM_000999 ENSG00000172809 RPL38 L38 ribosomal protein L38 protein-coding 335-476 chr6 139542998 139543220 + 2 NA Intergenic AluSq2|SINE|Alu -68513 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 441-94 chr16 66178857 66179172 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie -187677 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 361-421 chr7 106340265 106340455 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -55377 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 328-116 chr12 97373116 97373301 + 2 NA Intergenic L2a|LINE|L2 -89568 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 369-117 chr14 62483467 62483693 + 2 NA Intergenic Intergenic -343607 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 530-147 chr2 220888977 220889403 + 2 NA Intergenic Intergenic 683114 NM_001304537 2043 Hs.371218 NM_004438 ENSG00000116106 EPHA4 EK8|HEK8|SEK|TYRO1 EPH receptor A4 protein-coding 328-368 chr3 138554748 138554954 + 2 NA intron (NM_001288967, intron 2 of 13) L1PB|LINE|L1 37105 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 349-103 chr11 98653494 98653668 + 2 NA Intergenic Intergenic -367368 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 329-327 chr20 19357657 19357828 + 2 NA intron (NM_020689, intron 2 of 16) intron (NM_020689, intron 2 of 16) -73146 NR_024564 100130264 Hs.683814 NR_024564 ENSG00000179447 LOC100130264 - uncharacterized LOC100130264 ncRNA 407-42 chr10 123290867 123291228 + 2 NA Intergenic L1M4|LINE|L1 136645 NM_004725 9184 Hs.418533 NM_004725 ENSG00000154473 BUB3 BUB3L|hBUB3 BUB3 mitotic checkpoint protein protein-coding 306-171 chr15 90117028 90117187 + 2 NA intron (NR_149130, intron 2 of 2) intron (NR_149130, intron 2 of 2) -14553 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 309-143 chr14 43237694 43237869 + 2 NA Intergenic Intergenic 1269502 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 293-241 chr21 30267293 30267519 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 15544 NM_001085455 643803 Hs.580883 NM_001085455 ENSG00000188694 KRTAP24-1 KAP24.1 keratin associated protein 24-1 protein-coding 356-176 chr16 13724696 13724990 + 2 NA Intergenic L1PB3|LINE|L1 -195314 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 269-55 chr10 133449409 133449613 + 2 NA Intergenic L1MA5|LINE|L1 -4417 NR_149718 619207 Hs.659384 NM_001033584 ENSG00000214279 SCART1 - scavenger receptor family member expressed on T cells 1 pseudo 300-107 chr14 43648026 43648277 + 2 NA Intergenic AluSz|SINE|Alu 859132 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 393-181 chr2 181304265 181304588 + 2 NA intron (NR_130784, intron 3 of 4) intron (NR_130784, intron 3 of 4) 1226 NR_039637 100616213 NR_039637 ENSG00000266705 MIR4437 mir-4437 microRNA 4437 ncRNA 369-270 chr3 102833087 102833399 + 2 NA Intergenic L1PA13|LINE|L1 398228 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 307-122 chr13 84111412 84111597 + 2 NA Intergenic Intergenic -29098 NR_046871 100874128 Hs.578060 NR_046871 LINC00333 NCRNA00333 long intergenic non-protein coding RNA 333 ncRNA 216-122 chr16 9972552 9972702 + 2 NA intron (NM_001134408, intron 2 of 13) L1MEf|LINE|L1 209440 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 248-239 chr3 35237478 35237671 + 2 NA intron (NR_110817, intron 2 of 3) intron (NR_110817, intron 2 of 3) 156449 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 338-12 chr1 84430333 84430564 + 2 NA Intergenic L1MEg2|LINE|L1 22097 NM_058248 58511 Hs.129142 NM_021233 ENSG00000137976 DNASE2B DLAD deoxyribonuclease 2 beta protein-coding 299-472 chr8 135135139 135135331 + 2 NA Intergenic Intergenic -98896 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 310-120 chr13 108663929 108664127 + 2 NA intron (NM_001198950, intron 1 of 34) intron (NM_001198950, intron 1 of 34) 34417 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 761-32 chr2 210912776 210913328 + 2 NA Intergenic L1MC3|LINE|L1 295481 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 577-108 chr21 34019064 34019599 + 2 NA Intergenic L2a|LINE|L2 42949 NR_134561 101928126 Hs.436879 NR_134561 LOC101928126 - uncharacterized LOC101928126 ncRNA 1145 chr1 79174215 79175013 + 2 NA Intergenic L1ME3Cz|LINE|L1 -167884 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 358-112 chr13 92975887 92976070 + 2 NA Intergenic L1ME1|LINE|L1 -69363 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 450-83 chr14 60143033 60143394 + 2 NA TTS (NM_001322281) TTS (NM_001322281) 22185 NM_016029 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 201-38 chr10 128432485 128432633 + 2 NA Intergenic Intergenic 146609 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 447-206 chr5 26050417 26050728 + 2 NA Intergenic Intergenic 859619 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 571-62 chr17 72814667 72815144 + 2 NA intron (NM_001352692, intron 6 of 9) intron (NM_001352692, intron 6 of 9) -174433 NR_033876 400619 Hs.447555 NR_033876 ENSG00000227036 LINC00511 LCAL5|onco-lncRNA-12 long intergenic non-protein coding RNA 511 ncRNA 350-316 chr3 88886739 88887005 + 2 NA Intergenic LTR17|LTR|ERV1 -220749 NM_005233 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 241-201 chr2 148703372 148703527 + 2 NA intron (NM_015630, intron 2 of 13) intron (NM_015630, intron 2 of 13) 58698 NM_015630 26122 Hs.23270 NM_015630 ENSG00000135999 EPC2 EPC-LIKE enhancer of polycomb homolog 2 protein-coding 401-20 chr1 238013800 238014023 + 2 NA Intergenic Intergenic -122989 NM_021186 57829 Hs.136241 NM_021186 ENSG00000116996 ZP4 ZBP|ZP1|ZPB|Zp-4 zona pellucida glycoprotein 4 protein-coding 427-127 chr2 133281020 133281278 + 2 NA intron (NR_110294, intron 4 of 4) intron (NR_110294, intron 4 of 4) 14954 NR_110294 101928161 Hs.661917 NR_110294 ENSG00000226953 NCKAP5-AS2 - NCKAP5 antisense RNA 2 ncRNA 341-5 chr1 24741849 24742140 + 2 NA Intergenic L2a|LINE|L2 -3453 NM_013943 25932 Hs.440544 NM_013943 ENSG00000169504 CLIC4 CLIC4L|H1|MTCLIC|huH1|p64H1 chloride intracellular channel 4 protein-coding 471-48 chr11 64941984 64942396 + 2 NA intron (NM_001037225, intron 8 of 10) intron (NM_001037225, intron 8 of 10) -6297 NM_130769 170589 Hs.436119 NM_130769 ENSG00000149735 GPHA2 A2|GPA2|ZSIG51 glycoprotein hormone subunit alpha 2 protein-coding 514-135 chr19 37633887 37634304 + 2 NA 3' UTR (NM_001320671, exon 6 of 6) 3' UTR (NM_001320671, exon 6 of 6) 21370 NM_001320667 22835 Hs.668737 NM_014898 ENSG00000120784 ZFP30 ZNF745 ZFP30 zinc finger protein protein-coding 125-8 chr11 25533681 25533795 + 2 NA Intergenic L2a|LINE|L2 -655385 NM_001313726 63982 Hs.91791 NM_031418 ENSG00000134343 ANO3 C11orf25|DYT23|DYT24|GENX-3947|TMEM16C anoctamin 3 protein-coding 123-43 chr4 158056556 158056648 + 2 NA Intergenic L1M4a1|LINE|L1 -114150 NR_147410 285505 NR_147407 ENSG00000248429 FAM198B-AS1 - FAM198B antisense RNA 1 ncRNA 385-279 chr4 94741404 94741604 + 2 NA Intergenic MLT2E|LTR|ERVL 16029 NR_121610 100507012 Hs.128612 NR_121610 BMPR1B-DT BMPR1B-AS1 BMPR1B divergent transcript ncRNA 192-112 chr2 193157685 193157791 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 407893 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 247-315 chr5 11576201 11576400 + 2 NA intron (NM_001288717, intron 2 of 20) L2|LINE|L2 12617 NM_001288715 1501 Hs.314543 NM_001332 ENSG00000169862 CTNND2 GT24|NPRAP catenin delta 2 protein-coding 517-153 chr2 219201964 219202306 + 2 NA Intergenic Intergenic -4647 NM_138802 130617 Hs.534540 NM_138802 ENSG00000158552 ZFAND2B AIRAPL zinc finger AN1-type containing 2B protein-coding 244-308 chr5 125687322 125687501 + 2 NA Intergenic L1M4c|LINE|L1 194150 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 166-34 chr16 22378742 22378834 + 2 NA TTS (NR_148970) TTS (NR_148970) 3901 NR_148970 440346 Hs.680205 NR_148970 ENSG00000260790 LOC440346 - uncharacterized LOC440346 ncRNA 536-153 chr21 19245364 19245758 + 2 NA Intergenic Intergenic -485749 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 348-295 chr3 53629986 53630236 + 2 NA intron (NM_001128840, intron 3 of 47) Tigger13a|DNA|TcMar-Tigger 135500 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 182-126 chr4 127338187 127338295 + 2 NA Intergenic Intergenic -294716 NM_015693 27152 Hs.391481 NM_015693 ENSG00000164066 INTU CPLANE4|INT|OFD17|PDZD6|PDZK6|SRTD20 inturned planar cell polarity protein protein-coding 577-147 chr5 37865727 37866202 + 2 NA intron (NR_103441, intron 1 of 3) MIR|SINE|MIR 25526 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 364-114 chr12 131394250 131394525 + 2 NA Intergenic Intergenic 46917 NR_103736 338797 Hs.592007 NM_001025466 LINC02370 - long intergenic non-protein coding RNA 2370 ncRNA 267-71 chr11 101623945 101624143 + 2 NA Intergenic Intergenic -40037 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 468-275 chr6 27989611 27990059 + 2 NA Intergenic Intergenic 32594 NM_012367 26212 Hs.532145 NM_012367 ENSG00000124657 OR2B6 OR2B1|OR2B1P|OR2B5|OR2B6P|OR5-40|OR5-41|OR6-31|dJ408B20.2 olfactory receptor family 2 subfamily B member 6 protein-coding 243-397 chr6 141174770 141174951 + 2 NA Intergenic Intergenic 491046 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 362-402 chr7 42743605 42743907 + 2 NA Intergenic Intergenic -37309 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 320-221 chr18 22149796 22150060 + 2 NA Intergenic Intergenic 19040 NR_102763 100128893 Hs.514745 NR_102763 ENSG00000266010 GATA6-AS1 BM742401|locus5689 GATA6 antisense RNA 1 (head to head) ncRNA 354-474 chr8 123884404 123884581 + 2 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 32505 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 361-413 chr7 51907100 51907346 + 2 NA Intergenic Intergenic -513967 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 362-238 chr2 188103484 188103734 + 2 NA intron (NR_126396, intron 2 of 2) L1PA15|LINE|L1 184082 NR_126396 104355152 NR_126396 ENSG00000231689 LINC01090 - long intergenic non-protein coding RNA 1090 ncRNA 348-558 chr9 81298891 81299190 + 2 NA Intergenic L1MCa|LINE|L1 390495 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 783-37 chr2 33804931 33805552 + 2 NA intron (NR_126403, intron 1 of 5) intron (NR_126403, intron 1 of 5) -77024 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 449-245 chr6 155932039 155932432 + 2 NA Intergenic MLT2D|LTR|ERVL -14562 NR_031606 100302259 NR_031606 ENSG00000221456 MIR1202 MIRN1202|hsa-mir-1202 microRNA 1202 ncRNA 241-365 chr7 40496443 40496586 + 2 NA intron (NM_001193312, intron 11 of 12) intron (NM_001193312, intron 11 of 12) 361538 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 231-202 chr21 31005314 31005466 + 2 NA Intergenic Intergenic 33086 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 601-156 chr9 80538867 80539321 + 2 NA Intergenic Intergenic 564071 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 493-95 chr15 62765306 62765678 + 2 NA intron (NM_015059, intron 37 of 55) intron (NM_015059, intron 37 of 55) -58465 NR_029709 406965 NR_029709 ENSG00000211137 MIR190A MIR190|MIRN190|hsa-mir-190a|miR-190|mir-190a microRNA 190a ncRNA 363-430 chr8 40374098 40374375 + 2 NA Intergenic Intergenic -30873 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 202-256 chr8 104142485 104142672 + 2 NA intron (NM_001348498, intron 19 of 24) MamTip2|DNA|hAT-Tip100 -80757 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 301-59 chr11 30646317 30646570 + 2 NA Intergenic Intergenic -60090 NM_001145399 744 Hs.289795 NM_001584 ENSG00000066382 MPPED2 239FB|C11orf8 metallophosphoesterase domain containing 2 protein-coding 378-403 chr7 49338716 49339048 + 2 NA Intergenic Intergenic 414335 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 303-32 chr10 15888282 15888515 + 2 NA Intergenic Intergenic -27865 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 331-561 chr9 119690169 119690486 + 2 NA Intergenic L2c|LINE|L2 -244733 NR_132393 106146149 Hs.638938 NR_132393 ENSG00000261432 LINC01613 n341773 long intergenic non-protein coding RNA 1613 ncRNA 307-79 chr11 21860322 21860533 + 2 NA Intergenic Intergenic -332658 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 365-241 chr21 22724488 22724833 + 2 NA Intergenic Intergenic -354624 NR_106746 102466967 NR_106746 ENSG00000275469 MIR6130 hsa-mir-6130 microRNA 6130 ncRNA 158-42 chr18 13596018 13596156 + 2 NA intron (NM_181482, intron 4 of 5) L1M4b|LINE|L1 -15027 NR_039752 100616130 NR_039752 ENSG00000263527 MIR4526 mir-4526 microRNA 4526 ncRNA 408-359 chr9 115621503 115621797 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 122589 NR_109805 101928775 Hs.522362 NR_109805 ENSG00000228714 LOC101928775 - uncharacterized LOC101928775 ncRNA 127-13 chr10 61421614 61421721 + 2 NA intron (NR_134508, intron 4 of 6) MLT1C|LTR|ERVL-MaLR -30972 NR_120643 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 478-151 chr2 180770841 180771171 + 2 NA intron (NR_104324, intron 3 of 4) L1M5|LINE|L1 78902 NR_104324 101669767 NR_104319 ENSG00000281131 SCHLAP1 LINC00913|PCAT11|PCAT114 SWI/SNF complex antagonist associated with prostate cancer 1 ncRNA 348-401 chr5 43427165 43427458 + 2 NA Intergenic Intergenic -14920 NM_001301873 56477 Hs.656904 NM_019846 ENSG00000151882 CCL28 CCK1|MEC|SCYA28 C-C motif chemokine ligand 28 protein-coding 435-138 chr20 46871942 46872271 + 2 NA Intergenic L1MC4a|LINE|L1 -22518 NM_172110 2139 Hs.472877 NM_005244 ENSG00000064655 EYA2 EAB1 EYA transcriptional coactivator and phosphatase 2 protein-coding 459-232 chr5 24846147 24846505 + 2 NA Intergenic L1MC4|LINE|L1 -5743 NR_037896 340107 Hs.145181 NR_037896 ENSG00000248908 LINC02239 - long intergenic non-protein coding RNA 2239 ncRNA 387-391 chr9 72915023 72915285 + 2 NA intron (NM_000689, intron 9 of 12) intron (NM_000689, intron 9 of 12) 37899 NM_000689 216 Hs.76392 NM_000689 ENSG00000165092 ALDH1A1 ALDC|ALDH-E1|ALDH1|ALDH11|HEL-9|HEL-S-53e|HEL12|PUMB1|RALDH1 aldehyde dehydrogenase 1 family member A1 protein-coding 247-447 chrX 90056649 90056818 + 2 NA Intergenic LTR49-int|LTR|ERV1 134825 NM_138960 90316 Hs.592220 NM_138960 ENSG00000153779 TGIF2LX TGIFLX TGFB induced factor homeobox 2 like X-linked protein-coding 773-10 chr14 68302166 68302693 + 2 NA intron (NM_133509, intron 8 of 10) L2b|LINE|L2 326358 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 366-343 chr5 63368517 63368815 + 2 NA Intergenic L1ME2|LINE|L1 593626 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 598-98 chr4 71438759 71439184 + 2 NA intron (NM_003759, intron 4 of 22) intron (NM_003759, intron 4 of 22) 99918 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 277-175 chr2 12752379 12752620 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 15132 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 304-488 chr7 47870243 47870443 + 2 NA intron (NM_138295, intron 24 of 56) L1MB8|LINE|L1 75052 NR_161269 80099 Hs.287647 NM_025031 C7orf69 - chromosome 7 open reading frame 69 ncRNA 341-180 chr16 9382368 9382694 + 2 NA intron (NR_135195, intron 1 of 2) L2b|LINE|L2 26943 NR_135195 101927009 Hs.537273 NR_135195 ENSG00000261617 LINC02177 - long intergenic non-protein coding RNA 2177 ncRNA 314-509 chr6 139266027 139266323 + 2 NA intron (NM_153235, intron 4 of 9) L1MEf|LINE|L1 25823 NM_153235 167838 Hs.535820 NM_153235 ENSG00000164440 TXLNB C6orf198|LST001|MDP77|dJ522B19.2 taxilin beta protein-coding 187-139 chr5 88767275 88767421 + 2 NA intron (NM_001364333, intron 3 of 9) intron (NM_001364333, intron 3 of 9) 18163 NM_001364357 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 382-271 chr3 100962299 100962502 + 2 NA intron (NM_001349332, intron 1 of 35) L2b|LINE|L2 31090 NM_015429 25890 Hs.477015 NM_015429 ENSG00000154175 ABI3BP NESHBP|TARSH ABI family member 3 binding protein protein-coding 380-149 chr17 34548112 34548409 + 2 NA Intergenic MIR3|SINE|MIR 31109 NR_160787 400591 Hs.514090 NM_207454 C17orf102 - chromosome 17 open reading frame 102 ncRNA 396-271 chr5 17714482 17714825 + 2 NA Intergenic AluYa5|SINE|Alu -59015 NM_001355258 391769 NM_001355258 ENSG00000269466 H3.Y - histone cluster 2, H3c pseudogene protein-coding 516-169 chr3 44720328 44720702 + 2 NA intron (NM_033210, intron 3 of 3) intron (NM_033210, intron 3 of 3) 7855 NM_001134442 91392 Hs.224843 NM_033210 ENSG00000196653 ZNF502 - zinc finger protein 502 protein-coding 306-428 chr6 40661505 40661742 + 2 NA Intergenic (GGGA)n|Simple_repeat|Simple_repeat -74259 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 427-211 chr5 105715068 105715412 + 2 NA Intergenic L1MD2|LINE|L1 615766 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 244-52 chr11 48708018 48708200 + 2 NA Intergenic ALR/Alpha|Satellite|centr 219316 NM_001005512 403253 Hs.554532 NM_001005512 ENSG00000237388 OR4A47 OR11-113 olfactory receptor family 4 subfamily A member 47 protein-coding 346-286 chr21 32090139 32090404 + 2 NA Intergenic MIRc|SINE|MIR -3976 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 177-42 chr13 57237118 57237273 + 2 NA Intergenic Intergenic 69998 NM_001130405 729240 Hs.525056 NM_001130405 ENSG00000229665 PRR20C PRR20|PRR20A|PRR20B|PRR20D|PRR20E proline rich 20C protein-coding 290-363 chr5 119576792 119577065 + 2 NA Intergenic Intergenic -52630 NM_001367956 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 534-99 chr18 59215182 59215515 + 2 NA Intergenic MIRb|SINE|MIR -4810 NM_002091 2922 Hs.153444 NM_002091 ENSG00000134443 GRP BN|GRP-10|preproGRP|proGRP gastrin releasing peptide protein-coding 321-371 chr3 60799581 60799752 + 2 NA intron (NR_148921, intron 4 of 4) L2c|LINE|L2 -181796 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 385-147 chr18 60528532 60528873 + 2 NA Intergenic Intergenic -155927 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 536-135 chr2 200037910 200038254 + 2 NA Intergenic L1ME4a|LINE|L1 -82591 NR_109906 129450 Hs.204619 NM_152382 ENSG00000162971 TYW5 C2orf60|hTYW5 tRNA-yW synthesizing protein 5 protein-coding 474-209 chr4 71360980 71361310 + 2 NA intron (NM_003759, intron 3 of 22) MER61A|LTR|ERV1 22092 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 346-82 chr11 105794467 105794799 + 2 NA intron (NR_046356, intron 3 of 16) intron (NR_046356, intron 3 of 16) 183927 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 300-469 chr8 84571646 84571853 + 2 NA intron (NM_001354308, intron 3 of 9) L1PA15-16|LINE|L1 -134178 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 425-201 chr4 48991441 48991748 + 2 NA intron (NM_001286791, intron 3 of 15) intron (NM_001286791, intron 3 of 15) 4952 NM_001286791 80157 Hs.479703 NM_025087 ENSG00000109182 CWH43 CWH43-C|PGAP2IP cell wall biogenesis 43 C-terminal homolog protein-coding 311-271 chr2 139600214 139600459 + 2 NA Intergenic Intergenic 703012 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 853 chr1 215546312 215546928 + 2 NA Intergenic Intergenic -20684 NM_001319294 51133 Hs.335139 NM_016121 ENSG00000136636 KCTD3 NY-REN-45 potassium channel tetramerization domain containing 3 protein-coding 602-67 chr2 156829260 156829657 + 2 NA Intergenic L1MA4A|LINE|L1 393079 NM_000408 2820 Hs.512382 NM_000408 ENSG00000115159 GPD2 GDH2|GPDM|mGPDH glycerol-3-phosphate dehydrogenase 2 protein-coding 351-453 chr7 61775814 61776112 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1528093 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 584-64 chr19 31135439 31135891 + 2 NA Intergenic L1ME1|LINE|L1 -31845 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 348-462 chr6 104138415 104138702 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 720988 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 348-298 chr3 72231521 72231711 + 2 NA Intergenic Intergenic 80359 NR_038221 201617 Hs.382623 NR_038221 ENSG00000243083 LINC00870 - long intergenic non-protein coding RNA 870 ncRNA 729-28 chr16 12745760 12746336 + 2 NA intron (NM_018340, intron 2 of 3) L1MEc|LINE|L1 25727 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 248-104 chr13 103882419 103882615 + 2 NA Intergenic Intergenic 457317 NR_126374 104326190 Hs.334381 NR_126374 ENSG00000234551 LINC01309 TCONS_l2_00007459 long intergenic non-protein coding RNA 1309 ncRNA 587-13 chr10 19082686 19083205 + 2 NA intron (NM_001142308, intron 2 of 39) MLT1A0|LTR|ERVL-MaLR 34144 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 422-131 chr18 75949873 75950154 + 2 NA Intergenic L1M2|LINE|L1 -172985 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 300-481 chr8 139097676 139097878 + 2 NA Intergenic Intergenic -183736 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 141-6 chr1 205635773 205635878 + 2 NA Intergenic Intergenic -2953 NM_021795 2005 Hs.497520 NM_001973 ENSG00000158711 ELK4 SAP1 ETS transcription factor ELK4 protein-coding 266-103 chr13 105095730 105095959 + 2 NA Intergenic Intergenic -370023 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 617-143 chrX 146949229 146949618 + 2 NA Intergenic Intergenic -134679 NM_001244892 100133053 NM_001244892 ENSG00000235699 CXorf51B CXorf51A chromosome X open reading frame 51B protein-coding 680-48 chr19 44474788 44475217 + 2 NA 3' UTR (NM_001288762, exon 4 of 4) 3' UTR (NM_001288762, exon 4 of 4) 25520 NM_001288759 7733 Hs.22305 NM_013256 ENSG00000167384 ZNF180 HHZ168 zinc finger protein 180 protein-coding 743-91 chr9 32054973 32055641 + 2 NA Intergenic Intergenic -329296 NM_001278352 48 Hs.567229 NM_002197 ENSG00000122729 ACO1 ACONS|HEL60|IREB1|IREBP|IREBP1|IRP1 aconitase 1 protein-coding 339-563 chr8 60313675 60313988 + 2 NA Intergenic MER41A|LTR|ERV1 -32431 NM_004056 767 Hs.654388 NM_004056 ENSG00000178538 CA8 CA-RP|CA-VIII|CALS|CAMRQ3|CARP carbonic anhydrase 8 protein-coding 600-102 chr5 89875017 89875544 + 2 NA Intergenic L1ME3A|LINE|L1 141440 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 576-189 chrX 76997993 76998401 + 2 NA intron (NR_110403, intron 1 of 3) L1PA8|LINE|L1 7304 NR_029905 442899 NR_029905 ENSG00000207995 MIR325 MIRN325|hsa-mir-325 microRNA 325 ncRNA 318-521 chr7 94126504 94126806 + 2 NA Intergenic Intergenic -122300 NR_133908 10282 Hs.489132 NM_005868 ENSG00000105829 BET1 HBET1 Bet1 golgi vesicular membrane trafficking protein protein-coding 396-164 chr2 64105383 64105659 + 2 NA intron (NM_020651, intron 2 of 6) L2a|LINE|L2 38899 NM_020651 57162 Hs.7886 NM_020651 ENSG00000197329 PELI1 - pellino E3 ubiquitin protein ligase 1 protein-coding 484-217 chr5 93616319 93616758 + 2 NA Intergenic Intergenic 4250 NR_031754 100313887 NR_031754 ENSG00000284336 MIR2277 mir-2277 microRNA 2277 ncRNA 319-173 chr16 26552488 26552650 + 2 NA Intergenic MER87B|LTR|ERV1 -514358 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 346-425 chr6 67834081 67834311 + 2 NA Intergenic Intergenic -221155 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 196-6 chr1 71832192 71832315 + 2 NA intron (NR_046218, intron 1 of 2) MamRTE1|LINE|RTE-BovB 4759 NR_046218 100852409 Hs.681780 NR_046218 ENSG00000228853 NEGR1-IT1 - NEGR1 intronic transcript 1 ncRNA 349-495 chr8 46642523 46642801 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -25019 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 502-13 chr1 118655130 118655467 + 2 NA Intergenic L2|LINE|L2 333045 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 219-118 chr15 85549213 85549394 + 2 NA intron (NM_007200, intron 5 of 36) intron (NM_007200, intron 5 of 36) -70647 NM_001270546 11214 Hs.459211 NM_006738 ENSG00000170776 AKAP13 AKAP-13|AKAP-Lbc|ARHGEF13|BRX|HA-3|Ht31|LBC|PRKA13|PROTO-LB|PROTO-LBC|c-lbc|p47 A-kinase anchoring protein 13 protein-coding 497-92 chr17 43379951 43380287 + 2 NA intron (NR_027413, intron 2 of 3) LTR10B1|LTR|ERV1 8779 NR_027413 100130581 Hs.546897 NR_027412 ENSG00000188825 LINC00910 - long intergenic non-protein coding RNA 910 ncRNA 331-215 chr18 12563531 12563798 + 2 NA intron (NM_020148, intron 2 of 15) intron (NM_020148, intron 2 of 15) 93068 NM_001128627 56907 Hs.515283 NM_020148 ENSG00000134278 SPIRE1 Spir-1 spire type actin nucleation factor 1 protein-coding 335-289 chr20 15191962 15192220 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) -4749 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 230-147 chr17 17046659 17046880 + 2 NA intron (NM_201274, intron 1 of 23) MER58A|DNA|hAT-Charlie 4009 NM_015134 23164 Hs.462341 NM_015134 ENSG00000133030 MPRIP M-RIP|MRIP|RHOIP3|RIP3|p116Rip myosin phosphatase Rho interacting protein protein-coding 257-243 chr20 57894148 57894322 + 2 NA Intergenic Intergenic -109669 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 777-13 chr11 54891183 54891664 + 2 NA Intergenic ALR/Alpha|Satellite|centr 184591 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 467-182 chr3 103844114 103844413 + 2 NA Intergenic L1M4|LINE|L1 -320147 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 342-326 chr3 102875552 102875746 + 2 NA Intergenic L1P1|LINE|L1 440634 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 299-288 chr3 89694103 89694260 + 2 NA Intergenic Intergenic 586560 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 215-344 chr9 129722612 129722768 + 2 NA TTS (NM_016307) TTS (NM_016307) -3984 NR_132102 101929437 Hs.112596 NR_132102 ENSG00000236024 PRRX2-AS1 - PRRX2 antisense RNA 1 ncRNA 249-361 chr6 132332366 132332570 + 2 NA intron (NM_015529, intron 4 of 11) intron (NM_015529, intron 4 of 11) 69007 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 517-160 chr20 40833269 40833641 + 2 NA Intergenic Intergenic -118832 NR_145814 109623474 NR_145814 SNORD154 - small nucleolar RNA, C/D box 154 snoRNA 438-281 chr8 125526778 125527201 + 2 NA Intergenic MER5A|DNA|hAT-Charlie 94780 NM_001282985 10221 Hs.444947 NM_025195 ENSG00000173334 TRIB1 C8FW|GIG-2|GIG2|SKIP1|TRB-1|TRB1 tribbles pseudokinase 1 protein-coding 265-164 chr19 39807806 39808006 + 2 NA Intergenic AluSx|SINE|Alu 21896 NR_106777 102465974 NR_106777 ENSG00000277759 MIR6719 hsa-mir-6719 microRNA 6719 ncRNA 216-151 chr19 8806774 8806924 + 2 NA 3' UTR (NM_144693, exon 10 of 10) 3' UTR (NM_144693, exon 10 of 10) 15214 NM_001304350 148156 Hs.349444 NM_144693 ENSG00000167785 ZNF558 - zinc finger protein 558 protein-coding 536-38 chr10 124408837 124409312 + 2 NA intron (NM_001171814, intron 1 of 8) intron (NM_001171814, intron 1 of 8) 9849 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 340-396 chr4 42247205 42247392 + 2 NA Intergenic Intergenic -94643 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 360-51 chr10 89309522 89309807 + 2 NA TTS (NM_001547) TTS (NM_001547) 7618 NM_001547 3433 Hs.437609 NM_001547 ENSG00000119922 IFIT2 G10P2|GARG-39|IFI-54|IFI-54K|IFI54|IFIT-2|ISG-54 K|ISG-54K|ISG54|P54|cig42 interferon induced protein with tetratricopeptide repeats 2 protein-coding 393-301 chr6 40772986 40773279 + 2 NA Intergenic MIR3|SINE|MIR -185768 NM_020737 57497 Hs.250015 NM_020737 ENSG00000156564 LRFN2 FIGLER2|KIAA1246|SALM1 leucine rich repeat and fibronectin type III domain containing 2 protein-coding 599-66 chr2 186579112 186579559 + 2 NA Intergenic Intergenic -10721 NM_002210 3685 Hs.436873 NM_002210 ENSG00000138448 ITGAV CD51|MSK8|VNRA|VTNR integrin subunit alpha V protein-coding 357-103 chr14 27303939 27304166 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -308536 NR_039992 100505967 Hs.668484 NR_039992 ENSG00000258548 LINC00645 - long intergenic non-protein coding RNA 645 ncRNA 572-138 chr5 45961052 45961460 + 2 NA Intergenic ALR/Alpha|Satellite|centr -264876 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 417-232 chr5 174867434 174867661 + 2 NA Intergenic MADE1|DNA|TcMar-Mariner 115813 NR_039777 100616202 NR_039777 ENSG00000266890 MIR4634 - microRNA 4634 ncRNA 333-454 chr5 76186921 76187191 + 2 NA intron (NM_014979, intron 2 of 12) intron (NM_014979, intron 2 of 12) 103673 NM_001297716 22987 Hs.646953 NM_014979 ENSG00000122012 SV2C - synaptic vesicle glycoprotein 2C protein-coding 163-114 chr7 54615215 54615345 + 2 NA Intergenic Intergenic 58310 NR_038994 285878 Hs.335933 NR_038994 ENSG00000224223 VSTM2A-OT1 GS1-18A18.1 VSTM2A overlapping transcript 1 ncRNA 222-226 chr3 5949590 5949763 + 2 NA Intergenic Intergenic -699421 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 362-318 chr4 94202558 94202881 + 2 NA intron (NR_125922, intron 1 of 8) intron (NR_125922, intron 1 of 8) 4837 NR_125922 101929210 Hs.518877 NR_125922 ENSG00000246541 LOC101929210 - uncharacterized LOC101929210 ncRNA 396-25 chr1 176103204 176103509 + 2 NA intron (NM_022457, intron 9 of 19) MER21C|LTR|ERVL 103888 NM_001286644 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 341-369 chr4 30446685 30446982 + 2 NA Intergenic Intergenic -273536 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 563-99 chr2 224113820 224114224 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -74703 NM_006216 5270 Hs.38449 NM_006216 ENSG00000135919 SERPINE2 GDN|GDNPF|PI-7|PI7|PN-1|PN1|PNI serpin family E member 2 protein-coding 426-227 chr5 26436233 26436593 + 2 NA Intergenic L1M1|LINE|L1 602173 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 498-16 chr1 212788776 212789164 + 2 NA intron (NM_015471, intron 1 of 5) intron (NM_015471, intron 1 of 5) 2807 NM_001297736 25936 Hs.497692 NM_015471 ENSG00000117697 NSL1 C1orf48|DC8|MIS14 NSL1 component of MIS12 kinetochore complex protein-coding 299-276 chr3 37582196 37582383 + 2 NA intron (NM_002207, intron 15 of 27) intron (NM_002207, intron 15 of 27) 130148 NM_002207 3680 Hs.113157 NM_002207 ENSG00000144668 ITGA9 ALPHA-RLC|ITGA4L|RLC integrin subunit alpha 9 protein-coding 391-344 chr8 64452313 64452553 + 2 NA Intergenic Intergenic 73284 NR_029669 406908 NR_029669 ENSG00000207816 MIR124-2 MIRN124-2|MIRN124A2|mir-124-2 microRNA 124-2 ncRNA 334-238 chr19 36869630 36869834 + 2 NA intron (NM_001242476, intron 3 of 3) intron (NM_001242476, intron 3 of 3) 18081 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 521-29 chr10 54354390 54354878 + 2 NA intron (NM_001354411, intron 5 of 34) intron (NM_001354411, intron 5 of 34) -131596 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 415-108 chr18 38317370 38317690 + 2 NA Intergenic L1ME3D|LINE|L1 660395 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 439-31 chr10 57456189 57456558 + 2 NA Intergenic L1MB7|LINE|L1 -151814 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 306-169 chr15 83877787 83878053 + 2 NA intron (NM_207517, intron 9 of 29) L1MEg|LINE|L1 -202267 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 226-133 chr18 2525543 2525715 + 2 NA Intergenic Intergenic 45876 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 617-84 chr3 63295683 63296221 + 2 NA intron (NM_001130003, intron 2 of 5) intron (NM_001130003, intron 2 of 5) 17644 NM_001130003 132204 Hs.648668 NM_144642 ENSG00000163630 SYNPR SPO synaptoporin protein-coding 329-433 chr5 1675820 1676099 + 2 NA Intergenic Intergenic 32909 NR_036240 100422966 NR_036240 ENSG00000263746 MIR4277 - microRNA 4277 ncRNA 308-401 chr5 150851300 150851502 + 2 NA intron (NM_001346557, intron 2 of 3) intron (NM_001346557, intron 2 of 3) 4878 NM_001145805 345611 Hs.519680 NM_001145805 ENSG00000237693 IRGM IFI1|IRGM1|LRG-47|LRG47 immunity related GTPase M protein-coding 511-142 chr20 15246584 15246980 + 2 NA intron (NM_001351663, intron 6 of 17) L1MB7|LINE|L1 49942 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 319 chr1 22940708 22940964 + 2 NA Intergenic L1MD|LINE|L1 32030 NM_001289974 646262 NM_001289974 ENSG00000215906 LACTBL1 - lactamase beta like 1 protein-coding 347-17 chr1 101714254 101714480 + 2 NA Intergenic Intergenic 132713 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 477-188 chr3 755896 756187 + 2 NA intron (NR_110118, intron 2 of 3) L1PA16|LINE|L1 163936 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 390-174 chr2 19596344 19596723 + 2 NA Intergenic MIR|SINE|MIR -237910 NM_145260 130497 Hs.123933 NM_145260 ENSG00000143867 OSR1 ODD odd-skipped related transcription factor 1 protein-coding 366-12 chr1 93051168 93051428 + 2 NA Intergenic Intergenic -27937 NM_001164391 22823 Hs.31016 NM_007358 ENSG00000143033 MTF2 M96|PCL2|TDRD19A|dJ976O13.2 metal response element binding transcription factor 2 protein-coding 484-2 chr1 36718048 36718466 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -234943 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 247-385 chr7 86988349 86988500 + 2 NA intron (NM_001142749, intron 1 of 21) MER2|DNA|TcMar-Tigger -22525 NM_152748 222223 Hs.208093 NM_152748 ENSG00000164659 KIAA1324L EIG121L KIAA1324 like protein-coding 344-428 chr6 95896716 95896966 + 2 NA Intergenic L1MC3|LINE|L1 -119133 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 349-99 chr11 70952032 70952267 + 2 NA intron (NM_012309, intron 9 of 24) MIRb|SINE|MIR -79781 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 301-40 chr10 52500347 52500568 + 2 NA Intergenic L3|LINE|CR1 -29924 NR_120641 101928687 Hs.380362 NR_120641 ENSG00000231131 LNCAROD A-ROD|LINC01468|lnc-MBL2-4 lncRNA activating regulator of DKK1 ncRNA 270-230 chr3 3702490 3702664 + 2 NA intron (NR_149025, intron 5 of 5) intron (NR_149025, intron 5 of 5) -96854 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 368-362 chr5 77310820 77311171 + 2 NA intron (NM_001349749, intron 2 of 22) intron (NM_001349749, intron 2 of 22) 100315 NM_001029852 8622 Hs.584830 NM_003719 ENSG00000113231 PDE8B ADSD|PPNAD3 phosphodiesterase 8B protein-coding 128-32 chr2 122576503 122576609 + 2 NA Intergenic Intergenic 496925 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 308-21 chr1 96271272 96271537 + 2 NA intron (NR_110693, intron 5 of 5) L1MC3|LINE|L1 102721 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 367-353 chr5 39151613 39151867 + 2 NA intron (NM_001243093, intron 3 of 18) intron (NM_001243093, intron 3 of 18) 67823 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 323-65 chr10 83043965 83044139 + 2 NA Intergenic Intergenic 633037 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 339-541 chr7 109981452 109981765 + 2 NA Intergenic Intergenic -21395 NR_003024 442720 Hs.530096 NR_003024 ENSG00000237064 EIF3IP1 RG208K23 eukaryotic translation initiation factor 3 subunit I pseudogene 1 pseudo 303-122 chr14 59959764 59960014 + 2 NA exon (NM_001355272, exon 9 of 33) exon (NM_001355272, exon 9 of 33) 40176 NM_001355272 341883 Hs.666245 NM_198499 ENSG00000131951 LRRC9 - leucine rich repeat containing 9 protein-coding 443-254 chr5 151546485 151546877 + 2 NA intron (NM_001447, intron 8 of 22) intron (NM_001447, intron 8 of 22) 22263 NM_001447 2196 Hs.591255 NM_001447 ENSG00000086570 FAT2 CDHF8|CDHR9|HFAT2|MEGF1|SCA45 FAT atypical cadherin 2 protein-coding 255-240 chr21 31635716 31635924 + 2 NA Intergenic L1M4|LINE|L1 -23802 NM_000454 6647 Hs.443914 NM_000454 ENSG00000142168 SOD1 ALS|ALS1|HEL-S-44|IPOA|SOD|hSod1|homodimer superoxide dismutase 1 protein-coding 334-581 chr9 137829210 137829454 + 2 NA intron (NM_001354263, intron 25 of 26) L1ME3Cz|LINE|L1 -9087 NR_030333 693187 NR_030333 ENSG00000207693 MIR602 MIRN602|hsa-mir-602 microRNA 602 ncRNA 120-29 chr21 27216230 27216316 + 2 NA Intergenic Charlie20a|DNA|hAT-Charlie -249185 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 295-224 chr2 123947235 123947442 + 2 NA Intergenic L1MA1|LINE|L1 77836 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 328-98 chr12 15597852 15598136 + 2 NA 3' UTR (NM_030670, exon 13 of 13) 3' UTR (NM_030670, exon 13 of 13) 51383 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 308-165 chr15 87372396 87372615 + 2 NA Intergenic L1PB2|LINE|L1 -204424 NR_026869 145978 Hs.350808 NM_152454 ENSG00000259527 LINC00052 NCRNA00052|TMEM83 long intergenic non-protein coding RNA 52 ncRNA 235-2 chr1 6887466 6887669 + 2 NA non-coding (NR_146203, exon 4 of 4) non-coding (NR_146203, exon 4 of 4) 102113 NM_001349610 23261 Hs.397705 NM_015215 ENSG00000171735 CAMTA1 CANPMR calmodulin binding transcription activator 1 protein-coding 355-439 chr6 118169904 118170136 + 2 NA intron (NM_001029858, intron 2 of 7) intron (NM_001029858, intron 2 of 7) 84117 NR_134601 105377967 Hs.692865 NR_134601 LOC105377967 - uncharacterized LOC105377967 ncRNA 689-87 chr6 72612241 72612689 + 2 NA Intergenic Intergenic -9378 NM_019842 56479 Hs.445324 NM_019842 ENSG00000185760 KCNQ5 Kv7.5|MRD46 potassium voltage-gated channel subfamily Q member 5 protein-coding 309-142 chr14 42877478 42877778 + 2 NA Intergenic L1MA9|LINE|L1 1270772 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 366-63 chr10 108992275 108992479 + 2 NA Intergenic MIRb|SINE|MIR -923084 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 398-185 chr2 240418124 240418400 + 2 NA Intergenic MER57F|LTR|ERV1 -17401 NM_002081 2817 Hs.328232 NM_002081 ENSG00000063660 GPC1 glypican glypican 1 protein-coding 200-51 chr11 85234186 85234333 + 2 NA intron (NM_001142699, intron 4 of 27) intron (NM_001142699, intron 4 of 27) -310838 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 301-142 chr16 13192332 13192537 + 2 NA intron (NM_001145204, intron 2 of 4) intron (NM_001145204, intron 2 of 4) 290836 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 355-397 chr5 41241492 41241708 + 2 NA intron (NM_001115131, intron 1 of 17) intron (NM_001115131, intron 1 of 17) 19869 NM_001115131 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 210-182 chr3 162747265 162747438 + 2 NA Intergenic L1MA3|LINE|L1 555950 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 227-301 chr5 170687936 170688083 + 2 NA intron (NM_001278340, intron 2 of 8) intron (NM_001278340, intron 2 of 8) -6539 NR_136214 105377716 Hs.570880 NR_136214 ENSG00000253591 LOC105377716 - uncharacterized LOC105377716 ncRNA 695-48 chr2 78396075 78396522 + 2 NA Intergenic Intergenic -105567 NR_110288 101927967 Hs.406952 NR_110288 LOC101927967 - uncharacterized LOC101927967 ncRNA 281-421 chr7 93077834 93078077 + 2 NA Intergenic L1PA10|LINE|L1 40024 NM_017654 54809 Hs.65641 NM_017654 ENSG00000205413 SAMD9 C7orf5|DRIF1|MIRAGE|NFTC|OEF1|OEF2 sterile alpha motif domain containing 9 protein-coding 339-475 chr5 157496207 157496489 + 2 NA intron (NM_033274, intron 14 of 22) L1ME4b|LINE|L1 -36248 NR_136205 102724404 Hs.570889 NR_136204 LOC102724404 - uncharacterized LOC102724404 ncRNA 291-469 chr8 126307777 126308022 + 2 NA Intergenic L1MEc|LINE|L1 -17596 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 405-222 chr4 42414054 42414445 + 2 NA intron (NM_001105529, intron 35 of 35) intron (NM_001105529, intron 35 of 35) 16761 NM_001080505 152573 Hs.370904 NM_001080505 ENSG00000178343 SHISA3 hShisa3 shisa family member 3 protein-coding 267-337 chr5 88928728 88928952 + 2 NA intron (NR_109941, intron 3 of 3) intron (NR_109941, intron 3 of 3) -24735 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 316-139 chr12 99287890 99288048 + 2 NA intron (NM_152788, intron 12 of 25) L1MA3|LINE|L1 -132879 NM_001204067 56899 Hs.506458 NM_020140 ENSG00000185046 ANKS1B AIDA|AIDA-1|ANKS2|EB-1|EB1|cajalin-2 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 447-12 chr1 175684530 175684753 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 58954 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 177-107 chr3 181361000 181361161 + 2 NA intron (NR_075091, intron 3 of 7) intron (NR_075091, intron 3 of 7) 81406 NR_125407 102724604 Hs.570524 NR_125407 ENSG00000241231 LOC102724604 - uncharacterized LOC102724604 ncRNA 250-430 chr8 91530557 91530778 + 2 NA Intergenic MIRb|SINE|MIR 281348 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 339-54 chr10 25108479 25108776 + 2 NA Intergenic MER4D|LTR|ERV1 -4431 NR_120649 101929025 Hs.553324 NR_120649 ENSG00000231422 LINC01516 - long intergenic non-protein coding RNA 1516 ncRNA 352-57 chr10 104948630 104948872 + 2 NA intron (NM_014978, intron 3 of 26) intron (NM_014978, intron 3 of 26) -282535 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 255-343 chr5 151323229 151323411 + 2 NA intron (NM_181776, intron 8 of 9) intron (NM_181776, intron 8 of 9) -19554 NM_001145017 285641 Hs.720893 NM_181774 ENSG00000186334 SLC36A3 PAT3|TRAMD2|tramdorin2 solute carrier family 36 member 3 protein-coding 527-254 chr7 129112661 129113107 + 2 NA Intergenic AluJr|SINE|Alu -13387 NR_002144 407835 Hs.592273 NR_002144 LOC407835 - mitogen-activated protein kinase kinase 2 pseudogene pseudo 306-243 chr2 103274012 103274285 + 2 NA Intergenic Intergenic -289719 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 158-123 chr9 15937491 15937593 + 2 NA intron (NM_001355547, intron 24 of 24) intron (NM_001355547, intron 24 of 24) 315565 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 427-109 chr2 34550620 34550990 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -126752 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 367-306 chr3 191974471 191974693 + 2 NA Intergenic MER47C|DNA|TcMar-Tigger -264048 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 423-51 chr11 111164227 111164613 + 2 NA Intergenic Intergenic -67102 NR_149131 105369490 NR_149131 ENSG00000271584 LINC02550 - long intergenic non-protein coding RNA 2550 ncRNA 267-442 chr9 5402909 5403091 + 2 NA intron (NM_018465, intron 3 of 5) intron (NM_018465, intron 3 of 5) 34925 NM_018465 55848 Hs.584242 NM_018465 ENSG00000107020 PLGRKT AD025|C9orf46|MDS030|PLG-RKT|Plg-R(KT) plasminogen receptor with a C-terminal lysine protein-coding 459-102 chr16 62954805 62955158 + 2 NA Intergenic Intergenic -918543 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 290-415 chr7 36856168 36856337 + 2 NA intron (NM_001206480, intron 21 of 21) intron (NM_001206480, intron 21 of 21) 63180 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 264-112 chr13 67464584 67464782 + 2 NA Intergenic Intergenic 92296 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 236-105 chr13 84632142 84632317 + 2 NA Intergenic L1MA7|LINE|L1 -151425 NR_132852 106635542 NR_132852 SNORA107 - small nucleolar RNA, H/ACA box 107 snoRNA 223-5 chr1 63956849 63957017 + 2 NA intron (NM_005012, intron 1 of 8) LTR81A|LTR|Gypsy 155272 NR_110666 101927034 Hs.680824 NR_110665 ENSG00000223949 ROR1-AS1 - ROR1 antisense RNA 1 ncRNA 333-539 chr7 62830220 62830409 + 2 NA Intergenic ALR/Alpha|Satellite|centr 473742 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 638-2 chr1 61922376 61922864 + 2 NA intron (NM_001350145, intron 26 of 43) intron (NM_001350145, intron 26 of 43) 76545 NR_162146 113219465 NR_162146 MIR12132 - microRNA 12132 ncRNA 286-379 chr6 17864651 17864908 + 2 NA intron (NM_001105567, intron 4 of 36) intron (NM_001105567, intron 4 of 36) 122856 NM_001105567 63971 Hs.94499 NM_022113 ENSG00000137177 KIF13A RBKIN|bA500C11.2 kinesin family member 13A protein-coding 304-140 chr14 45672998 45673235 + 2 NA Intergenic L1MA4|LINE|L1 42486 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 380-93 chr12 39590682 39590974 + 2 NA intron (NM_005164, intron 6 of 9) intron (NM_005164, intron 6 of 9) 28975 NM_005164 225 Hs.117852 NM_005164 ENSG00000173208 ABCD2 ABC39|ALDL1|ALDR|ALDRP|hALDR ATP binding cassette subfamily D member 2 protein-coding 330-13 chr1 53458670 53458847 + 2 NA promoter-TSS (NM_033067) promoter-TSS (NM_033067) -641 NM_033067 63948 Hs.131654 NM_033067 ENSG00000143006 DMRTB1 - DMRT like family B with proline rich C-terminal 1 protein-coding 494-240 chr6 17220939 17221343 + 2 NA Intergenic Intergenic -60220 NM_001143942 221662 Hs.519904 NM_153020 ENSG00000112183 RBM24 RNPC6|dJ259A10.1 RNA binding motif protein 24 protein-coding 374-217 chr20 11749505 11749718 + 2 NA Intergenic Intergenic 121104 NR_110635 728450 Hs.560990 NR_110635 ENSG00000228422 LINC00687 C20orf61|dJ1012F16.1 long intergenic non-protein coding RNA 687 ncRNA 733-70 chr6 47873177 47873681 + 2 NA Intergenic Intergenic 86361 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 185-93 chr2 59464455 59464603 + 2 NA Intergenic Intergenic 246821 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 403-178 chr20 24859606 24859820 + 2 NA Intergenic Intergenic -89556 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 477-8 chr1 45991811 45992260 + 2 NA intron (NM_001324320, intron 5 of 29) L1MC3|LINE|L1 127687 NM_001324321 23139 Hs.319481 NM_015112 ENSG00000086015 MAST2 MAST205|MTSSK microtubule associated serine/threonine kinase 2 protein-coding 396-346 chr8 34720907 34721193 + 2 NA Intergenic Intergenic -62871 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 336-161 chr14 46154887 46155116 + 2 NA intron (NR_102702, intron 1 of 3) MER67C|LTR|ERV1 90842 NR_102702 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 222-293 chr5 65689331 65689537 + 2 NA intron (NM_019072, intron 5 of 10) intron (NM_019072, intron 5 of 10) 32675 NM_019072 54557 Hs.482301 NM_019072 ENSG00000197860 SGTB SGT2 small glutamine rich tetratricopeptide repeat containing beta protein-coding 413-116 chr17 74672730 74673010 + 2 NA intron (NM_175738, intron 1 of 8) intron (NM_175738, intron 1 of 8) 1739 NM_175738 326624 Hs.351413 NM_175738 ENSG00000172794 RAB37 - RAB37, member RAS oncogene family protein-coding 264-303 chr4 179107294 179107511 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -1199466 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 201-173 chr4 44063083 44063271 + 2 NA Intergenic MSTB1-int|LTR|ERVL-MaLR 46115 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 175-45 chr12 80393965 80394068 + 2 NA Intergenic L1ME4a|LINE|L1 -50219 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 358-361 chr5 28115187 28115492 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR 172326 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 115-37 chr5 32506037 32506121 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -61339 NR_144318 51663 Hs.435231 NM_016107 ENSG00000056097 ZFR SPG71|ZFR1 zinc finger RNA binding protein protein-coding 242-159 chr19 55974858 55975060 + 2 NA intron (NM_001317000, intron 7 of 9) LTR19B|LTR|ERV1 -24767 NM_153447 126206 Hs.356872 NM_153447 ENSG00000171487 NLRP5 CLR19.8|MATER|NALP5|PAN11|PYPAF8 NLR family pyrin domain containing 5 protein-coding 605-56 chr2 185013161 185013618 + 2 NA Intergenic MER61-int|LTR|ERV1 153683 NR_136319 105373782 Hs.128285 NR_136319 LOC105373782 - uncharacterized LOC105373782 ncRNA 308-168 chr16 3208633 3208930 + 2 NA Intergenic Intergenic -6781 NR_002169 26184 Hs.651203 NR_002169 ENSG00000203581 OR1F2P OLFMF2|OR16-3|OR1F11|OR1F2|OR1F3P|hg91 olfactory receptor family 1 subfamily F member 2 pseudogene pseudo 365-60 chr10 98982453 98982688 + 2 NA intron (NM_021828, intron 3 of 11) intron (NM_021828, intron 3 of 11) -58002 NR_106762 102465253 NR_106762 ENSG00000274056 MIR6507 hsa-mir-6507 microRNA 6507 ncRNA 297-258 chr20 14305188 14305403 + 2 NA intron (NM_001351663, intron 3 of 17) L2a|LINE|L2 32317 NM_198391 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 272-194 chr2 67555571 67555826 + 2 NA Intergenic MIR3|SINE|MIR 158365 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 335-130 chr12 98185440 98185685 + 2 NA Intergenic MIR|SINE|MIR -190114 NR_036189 100422924 NR_036189 ENSG00000263890 MIR4303 - microRNA 4303 ncRNA 557-15 chr10 19808914 19809316 + 2 NA Intergenic L1MB7|LINE|L1 -7317 NM_032812 84898 Hs.99472 NM_032812 ENSG00000120594 PLXDC2 TEM7R plexin domain containing 2 protein-coding 407-39 chr10 106479594 106479884 + 2 NA Intergenic Intergenic 339574 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 270-348 chr7 4504306 4504486 + 2 NA Intergenic Intergenic -177899 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 398-183 chr2 228911368 228911700 + 2 NA Intergenic L1MA8|LINE|L1 -300139 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 362-31 chr1 181440598 181440869 + 2 NA Intergenic AluJb|SINE|Alu -42784 NM_000721 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 311-387 chr4 110721391 110721693 + 2 NA Intergenic L1PB1|LINE|L1 -79419 NM_153426 5308 Hs.643588 NM_000325 ENSG00000164093 PITX2 ARP1|ASGD4|Brx1|IDG2|IGDS|IGDS2|IHG2|IRID2|Otlx2|PTX2|RGS|RIEG|RIEG1|RS paired like homeodomain 2 protein-coding 250-460 chr9 104462575 104462753 + 2 NA Intergenic Intergenic -41599 NM_001004485 138805 Hs.553602 NM_001004485 ENSG00000186881 OR13F1 OR9-6 olfactory receptor family 13 subfamily F member 1 protein-coding 569-167 chr7 50911483 50911871 + 2 NA Intergenic L1M4|LINE|L1 -118224 NM_001371008 318-390 chr4 39321117 39321376 + 2 NA intron (NM_001204747, intron 8 of 24) intron (NM_001204747, intron 8 of 24) 45116 NM_002913 5981 Hs.507475 NM_002913 ENSG00000035928 RFC1 A1|CANVAS|MHCBFB|PO-GA|RECC1|RFC|RFC140 replication factor C subunit 1 protein-coding 326-192 chr16 78620248 78620480 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 520710 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 300-295 chr3 157288042 157288296 + 2 NA intron (NM_001167911, intron 10 of 12) intron (NM_001167911, intron 10 of 12) -127409 NM_020307 57018 Hs.4859 NM_020307 ENSG00000163660 CCNL1 ANIA6A|BM-001|PRO1073|ania-6a cyclin L1 protein-coding 496-211 chr5 51250154 51250458 + 2 NA Intergenic L1MEi|LINE|L1 133026 NR_046243 642366 Hs.544139 NR_046243 LOC642366 - uncharacterized LOC642366 ncRNA 262-227 chr2 145938656 145938853 + 2 NA Intergenic Intergenic -648303 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 276-22 chr1 177528462 177528615 + 2 NA Intergenic Intergenic -171986 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 249-50 chr10 55284462 55284656 + 2 NA intron (NM_001354404, intron 2 of 34) intron (NM_001354404, intron 2 of 34) -314483 NM_001190478 100463289 NM_001190478 ENSG00000249860 MTRNR2L5 HN5 MT-RNR2 like 5 protein-coding 298-119 chr14 61539416 61539647 + 2 NA intron (NM_006255, intron 12 of 13) intron (NM_006255, intron 12 of 13) 30663 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 281-145 chr16 26749326 26749518 + 2 NA Intergenic Intergenic -317505 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 163-9 chr1 191429607 191429743 + 2 NA Intergenic Intergenic -201177 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 412-55 chr11 87578228 87578445 + 2 NA Intergenic MIRc|SINE|MIR 141075 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 390-88 chr14 43137006 43137275 + 2 NA Intergenic Intergenic 1370143 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 256-287 chr4 43864467 43864625 + 2 NA Intergenic Intergenic -152315 NR_131959 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 659-105 chr7 56619726 56620164 + 2 NA Intergenic L1M2|LINE|L1 -81815 NR_108099 101928401 Hs.385614 NR_108099 ENSG00000233288 LOC101928401 - uncharacterized LOC101928401 ncRNA 306-305 chr3 40757079 40757329 + 2 NA Intergenic Intergenic 232244 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 301-123 chr14 56426596 56426790 + 2 NA Intergenic Intergenic -87638 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 162-57 chr2 78652806 78652951 + 2 NA Intergenic Intergenic 107347 NR_136312 105374820 Hs.570225 NR_136311 LOC105374820 - uncharacterized LOC105374820 ncRNA 322-12 chr1 72408771 72409018 + 2 NA Intergenic Intergenic -126355 NM_173808 257194 Hs.146542 NM_173808 ENSG00000172260 NEGR1 DMML2433|IGLON4|KILON|Ntra neuronal growth regulator 1 protein-coding 299-416 chr7 48023441 48023681 + 2 NA intron (NM_001284350, intron 2 of 10) L1MB5|LINE|L1 5546 NM_152782 256979 Hs.406741 NM_152782 ENSG00000164744 SUN3 SUNC1 Sad1 and UNC84 domain containing 3 protein-coding 258-319 chr5 52254392 52254623 + 2 NA Intergenic Intergenic 246476 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 228-388 chrX 155109142 155109357 + 2 NA intron (NM_024332, intron 8 of 11) L1MC4|LINE|L1 37829 NM_024332 79184 Hs.558537 NM_024332 ENSG00000185515 BRCC3 BRCC36|C6.1A|CXorf53 BRCA1/BRCA2-containing complex subunit 3 protein-coding 358-173 chr19 3838404 3838732 + 2 NA intron (NM_015174, intron 1 of 18) intron (NM_015174, intron 1 of 18) 30470 NM_015174 23217 Hs.65750 NM_015174 ENSG00000105278 ZFR2 KIAA1086 zinc finger RNA binding protein 2 protein-coding 269-357 chr6 124819060 124819219 + 2 NA intron (NM_001040214, intron 6 of 6) intron (NM_001040214, intron 6 of 6) -143406 NM_001286398 154214 Hs.12876 NM_152553 ENSG00000146373 RNF217 C6orf172|IBRDC1|OSTL|dJ84N20.1 ring finger protein 217 protein-coding 491-274 chr9 36192184 36192598 + 2 NA intron (NM_001311204, intron 1 of 4) intron (NM_001311204, intron 1 of 4) 1470 NM_001311205 1211 Hs.522114 NM_001833 ENSG00000122705 CLTA LCA clathrin light chain A protein-coding 315-334 chr4 42841237 42841484 + 2 NA Intergenic Intergenic -51906 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 308-205 chr19 24369467 24369717 + 2 NA Intergenic ALR/Alpha|Satellite|centr -206145 NR_003603 100101266 Hs.149312 NR_003603 ENSG00000268442 HAVCR1P1 - hepatitis A virus cellular receptor 1 pseudogene 1 pseudo 262-18 chr1 96321863 96322028 + 2 NA intron (NR_110693, intron 3 of 5) L1MA9|LINE|L1 52180 NR_110693 101928241 Hs.514137 NR_110693 ENSG00000231987 LINC01787 - long intergenic non-protein coding RNA 1787 ncRNA 355-500 chr8 83245662 83245909 + 2 NA Intergenic Intergenic -157973 NR_122034 103352670 Hs.399852 NR_122034 ENSG00000253898 LINC01419 LVCAT7|TCONS_00014497 long intergenic non-protein coding RNA 1419 ncRNA 509-233 chr7 46901986 46902315 + 2 NA Intergenic Intergenic -205028 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 494-191 chr3 176844951 176845303 + 2 NA Intergenic Intergenic -28126 NR_110819 101928684 Hs.639352 NR_110819 ENSG00000228308 LINC01209 - long intergenic non-protein coding RNA 1209 ncRNA 468-110 chr17 33427035 33427415 + 2 NA intron (NM_001094, intron 1 of 9) intron (NM_001094, intron 1 of 9) 106535 NR_037584 100506677 Hs.652571 NR_037584 ENSG00000265544 AA06 AA02|AA04|AA05 uncharacterized LOC100506677 pseudo 751-83 chr9 86719492 86720150 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR 227685 NM_002048 2619 Hs.65029 NM_002048 ENSG00000180447 GAS1 - growth arrest specific 1 protein-coding 660-119 chr9 86189772 86190227 + 2 NA Intergenic L1PBa|LINE|L1 62459 NR_110996 101927623 Hs.575644 NR_110996 LOC101927623 - uncharacterized LOC101927623 ncRNA 508-105 chr2 83861874 83862279 + 2 NA Intergenic Intergenic 339262 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 527-215 chr5 141354709 141355099 + 2 NA promoter-TSS (NM_032053) promoter-TSS (NM_032053) -117 NM_018917 56111 Hs.368160 NM_018917 ENSG00000262576 PCDHGA4 PCDH-GAMMA-A4 protocadherin gamma subfamily A, 4 protein-coding 569-151 chr6 12355127 12355635 + 2 NA Intergenic Intergenic 65020 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 307-6 chr1 50193772 50194058 + 2 NA exon (NM_001324214, exon 5 of 8) exon (NM_001324214, exon 5 of 8) 84082 NM_001324217 1996 Hs.213050 NM_021952 ENSG00000162374 ELAVL4 HUD|PNEM ELAV like RNA binding protein 4 protein-coding 320-11 chr1 70540895 70541110 + 2 NA Intergenic L1MEi|LINE|L1 129734 NM_001902 1491 Hs.19904 NM_001902 ENSG00000116761 CTH - cystathionine gamma-lyase protein-coding 443-272 chr7 4578305 4578616 + 2 NA Intergenic Intergenic -103835 NM_001037165 221937 Hs.487393 NM_001037165 ENSG00000164916 FOXK1 FOXK1L forkhead box K1 protein-coding 293-341 chr5 79413851 79414022 + 2 NA intron (NM_004272, intron 5 of 8) intron (NM_004272, intron 5 of 8) 99900 NM_001277077 9456 Hs.591761 NM_004272 ENSG00000152413 HOMER1 HOMER|HOMER1A|HOMER1B|HOMER1C|SYN47|Ves-1 homer scaffold protein 1 protein-coding 277-335 chr5 122273716 122273941 + 2 NA Intergenic Intergenic -37863 NR_131762 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 363-5 chr1 57918338 57918534 + 2 NA intron (NM_021080, intron 1 of 16) MSTB2|LTR|ERVL-MaLR 57855 NR_104363 101926890 Hs.662207 NR_104362 ENSG00000226759 DAB1-AS1 - DAB1 antisense RNA 1 ncRNA 326-9 chr1 58135181 58135374 + 2 NA intron (NM_001353980, intron 1 of 5) intron (NM_001353980, intron 1 of 5) 115226 NM_021080 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 581-102 chr3 106969957 106970499 + 2 NA Intergenic Intergenic 270410 NR_028303 100302640 Hs.648607 NR_028303 ENSG00000242759 LINC00882 - long intergenic non-protein coding RNA 882 ncRNA 364-105 chr12 46317970 46318160 + 2 NA Intergenic MIRb|SINE|MIR -49022 NM_001278388 81539 Hs.533770 NM_030674 ENSG00000111371 SLC38A1 ATA1|NAT2|SAT1|SNAT1 solute carrier family 38 member 1 protein-coding 257-364 chr6 131777986 131778211 + 2 NA Intergenic AluSx|SINE|Alu -14074 NR_039610 100616455 NR_039610 ENSG00000266807 MIR548H5 - microRNA 548h-5 ncRNA 425-11 chr1 171128397 171128792 + 2 NA Intergenic L1MA9|LINE|L1 -9146 NR_002601 388714 Hs.448988 NR_002601 ENSG00000117507 FMO6P FMO6 flavin containing dimethylaniline monoxygenase 6, pseudogene pseudo 262-24 chr1 195715748 195715891 + 2 NA Intergenic MER87|LTR|ERV1 372896 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 240-6 chr1 38696028 38696214 + 2 NA Intergenic Intergenic 163651 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 583-80 chr2 12118030 12118471 + 2 NA intron (NR_110197, intron 3 of 3) AluSz|SINE|Alu -80880 NR_037452 100500884 NR_037452 ENSG00000264089 MIR3681 - microRNA 3681 ncRNA 423-83 chr14 96996558 96996894 + 2 NA Intergenic Intergenic 53147 NR_104113 145249 Hs.592323 NR_104113 ENSG00000225163 LINC00618 C14orf63 long intergenic non-protein coding RNA 618 ncRNA 640-21 chr11 14069878 14070420 + 2 NA intron (NM_006108, intron 3 of 15) intron (NM_006108, intron 3 of 15) 107426 NM_006108 10418 Hs.643864 NM_006108 ENSG00000262655 SPON1 VSGP/F-spondin|f-spondin spondin 1 protein-coding 580-15 chr10 39012977 39013437 + 2 NA Intergenic ALR/Alpha|Satellite|centr 316611 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 359-292 chr20 59286202 59286420 + 2 NA Intergenic Intergenic -14300 NM_001302456 1908 Hs.1408 NM_000114 ENSG00000124205 EDN3 ET-3|ET3|HSCR4|PPET3|WS4B endothelin 3 protein-coding 195-199 chr5 101466408 101466588 + 2 NA Intergenic L1PA16|LINE|L1 -563216 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 199-238 chr8 87055962 87056139 + 2 NA intron (NM_173538, intron 4 of 10) MIR|SINE|MIR 189635 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 338-197 chr16 62174018 62174346 + 2 NA Intergenic Intergenic -137744 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 528-233 chr7 30711550 30711948 + 2 NA Intergenic AluSz6|SINE|Alu -11646 NM_001202481 1395 Hs.546246 NM_001883 ENSG00000106113 CRHR2 CRF-RB|CRF2|CRFR2|HM-CRF corticotropin releasing hormone receptor 2 protein-coding 300-96 chr12 127467239 127467428 + 2 NA Intergenic L2c|LINE|L2 -127261 NR_110057 101927616 Hs.637827 NR_110057 ENSG00000256362 LINC02375 - long intergenic non-protein coding RNA 2375 ncRNA 641-24 chr11 132769842 132770314 + 2 NA intron (NM_001319104, intron 1 of 6) intron (NM_001319104, intron 1 of 6) 173559 NM_001319103 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 349-481 chr7 111133905 111134100 + 2 NA intron (NM_032549, intron 3 of 5) intron (NM_032549, intron 3 of 5) 42875 NM_001099658 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 150-10 chr10 35707373 35707457 + 2 NA Intergenic L1MEd|LINE|L1 -65981 NM_031866 8325 Hs.302634 NM_031866 ENSG00000177283 FZD8 FZ-8|hFZ8 frizzled class receptor 8 protein-coding 613-78 chr3 35042096 35042481 + 2 NA intron (NR_110817, intron 2 of 3) ERVL-E-int|LTR|ERVL 351735 NR_110817 101928135 Hs.550715 NR_110817 LOC101928135 - uncharacterized LOC101928135 ncRNA 319-444 chr6 12420323 12420564 + 2 NA Intergenic L1M5|LINE|L1 130082 NM_001955 1906 Hs.511899 NM_001955 ENSG00000078401 EDN1 ARCND3|ET1|HDLCQ7|PPET1|QME endothelin 1 protein-coding 309-403 chr4 97344982 97345224 + 2 NA Intergenic L1MEf|LINE|L1 -21823 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 456-22 chr1 221468115 221468451 + 2 NA Intergenic L1PBa|LINE|L1 -131987 NR_024236 400804 Hs.722626 NR_024236 ENSG00000234754 C1orf140 - uncharacterized LOC400804 ncRNA 519-137 chr20 55835247 55835623 + 2 NA Intergenic Intergenic 170084 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 311-176 chr16 51317012 51317225 + 2 NA intron (NR_039672, intron 6 of 6) MIR3|SINE|MIR -165846 NM_002968 6299 Hs.135787 NM_002968 ENSG00000103449 SALL1 HEL-S-89|HSAL1|Sal-1|TBS|ZNF794 spalt like transcription factor 1 protein-coding 304-572 chrX 94363311 94363593 + 2 NA Intergenic Intergenic 689246 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 290-342 chr5 57570970 57571182 + 2 NA intron (NR_120607, intron 1 of 5) MIR|SINE|MIR 734 NR_120607 100996645 Hs.582496 NR_120607 LINCR-0003 - uncharacterized LincR-0003 ncRNA 410-143 chr2 106980224 106980593 + 2 NA Intergenic Intergenic -93299 NM_032528 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 530-90 chr16 31848048 31848377 + 2 NA Intergenic Intergenic -25546 NR_049749 10308 Hs.460645 NM_003414 ENSG00000185947 ZNF267 HZF2 zinc finger protein 267 protein-coding 307-431 chr6 114790828 114791012 + 2 NA Intergenic Intergenic -728043 NM_153612 222537 Hs.645477 NM_153612 ENSG00000249853 HS3ST5 3-OST-5|3OST5|HS3OST5|NBLA04021 heparan sulfate-glucosamine 3-sulfotransferase 5 protein-coding 321-108 chr11 105761498 105761781 + 2 NA intron (NR_046356, intron 3 of 16) MER58B|DNA|hAT-Charlie 150933 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 531-43 chr12 25410996 25411439 + 2 NA Intergenic Intergenic 142066 NM_152590 160492 Hs.44647 NM_152590 ENSG00000152936 LMNTD1 IFLTD1|LMNARS1|PAS1C1 lamin tail domain containing 1 protein-coding 340-267 chr2 81753376 81753574 + 2 NA Intergenic L1PB1|LINE|L1 -286529 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 571-194 chrX 97866849 97867271 + 2 NA Intergenic Intergenic -302525 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 239-28 chr10 28957418 28957586 + 2 NA Intergenic L1M5|LINE|L1 111094 NM_001278522 283080 NM_001278522 C10orf126 bA492M23.1 chromosome 10 open reading frame 126 protein-coding 292-309 chr4 35220812 35220998 + 2 NA Intergenic Intergenic -951158 NR_147184 105374394 Hs.570782 NR_147183 ENSG00000248685 LINC02484 - long intergenic non-protein coding RNA 2484 ncRNA 372-396 chr5 36314367 36314646 + 2 NA Intergenic L1MEg|LINE|L1 -12604 NM_001323277 202151 Hs.199777 NM_145000 ENSG00000164188 RANBP3L - RAN binding protein 3 like protein-coding 389-203 chr20 20210729 20211082 + 2 NA intron (NM_015585, intron 17 of 26) AluJr|SINE|Alu 154259 NM_001167816 26074 Hs.729168 NM_015585 ENSG00000089101 CFAP61 C20orf26|CaM-IP3|dJ1002M8.3|dJ1178H5.4 cilia and flagella associated protein 61 protein-coding 222-241 chr3 99296946 99297131 + 2 NA Intergenic Intergenic -341556 NM_001850 1295 Hs.654548 NM_001850 ENSG00000144810 COL8A1 C3orf7 collagen type VIII alpha 1 chain protein-coding 566-208 chr9 34910673 34911197 + 2 NA Intergenic AluJo|SINE|Alu -15171 NM_001309426 100129969 Hs.571602 NM_001309426 ENSG00000187791 FAM205C FAM205CP family with sequence similarity 205 member C protein-coding 221-327 chrX 127549626 127549814 + 2 NA Intergenic Intergenic 502683 NM_138289 139741 Hs.680125 NM_138289 ENSG00000123165 ACTRT1 AIP1|ARIP1|ARPT1|HSD27 actin related protein T1 protein-coding 297-57 chr10 72768044 72768251 + 2 NA intron (NR_073062, intron 3 of 9) intron (NR_073062, intron 3 of 9) 47118 NR_039823 100616286 NR_039823 ENSG00000266719 MIR4676 - microRNA 4676 ncRNA 263-161 chr18 1030700 1030858 + 2 NA Intergenic L1PA6|LINE|L1 -102786 NR_146724 388456 Hs.407666 NR_146724 ENSG00000259837 LINC01904 - long intergenic non-protein coding RNA 1904 ncRNA 355-486 chr8 20736982 20737297 + 2 NA Intergenic Intergenic -122213 NR_145737 109616983 NR_145737 SNORD3F - small nucleolar RNA, C/D box 3F snoRNA 208-254 chr8 12559967 12560138 + 2 NA intron (NR_047662, intron 8 of 8) (GTAT)n|Simple_repeat|Simple_repeat 105559 NR_047662 729732 Hs.322761 NR_047662 ENSG00000283674 LOC729732 - uncharacterized LOC729732 ncRNA 331-537 chr8 108531254 108531483 + 2 NA Intergenic Intergenic 87744 NM_014673 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 364-171 chr17 67624275 67624545 + 2 NA intron (NM_181671, intron 5 of 9) AluJb|SINE|Alu -93423 NM_001303272 25926 Hs.463936 NM_015462 ENSG00000130935 NOL11 - nucleolar protein 11 protein-coding 150-59 chr21 21883242 21883334 + 2 NA Intergenic Intergenic 136303 NR_109958 101927821 Hs.334181 NR_109958 ENSG00000233997 LINC01425 - long intergenic non-protein coding RNA 1425 ncRNA 261-138 chr17 28671055 28671198 + 2 NA intron (NM_003170, intron 1 of 36) intron (NM_003170, intron 1 of 36) 8921 NM_001320755 6830 Hs.250429 NM_003170 ENSG00000109111 SUPT6H SPT6|SPT6H|emb-5 SPT6 homolog, histone chaperone and transcription elongation factor protein-coding 294-236 chr2 137510409 137510622 + 2 NA intron (NM_001316349, intron 15 of 27) L1M4a1|LINE|L1 417417 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 804-39 chr20 54050312 54050859 + 2 NA intron (NM_001366297, intron 3 of 8) MER106B|DNA|hAT-Charlie 8435 NM_001323347 8537 Hs.400556 NM_003657 ENSG00000064787 BCAS1 AIBC1|NABC1 breast carcinoma amplified sequence 1 protein-coding 301-125 chr14 76842059 76842352 + 2 NA intron (NM_194287, intron 5 of 13) L1M5|LINE|L1 15797 NM_194287 145497 Hs.147276 NM_194287 ENSG00000100565 LRRC74A C14orf166B|LRRC74 leucine rich repeat containing 74A protein-coding 134-49 chr20 11950095 11950164 + 2 NA Intergenic L2a|LINE|L2 32236 NM_014962 22903 Hs.709366 NM_014962 ENSG00000132640 BTBD3 dJ742J24.1 BTB domain containing 3 protein-coding 236 chr1 6613437 6613635 + 2 NA promoter-TSS (NM_153812) promoter-TSS (NM_153812) -195 NM_153812 148479 Hs.516079 NM_153812 ENSG00000116273 PHF13 PHF5|SPOC1 PHD finger protein 13 protein-coding 220-371 chr8 92308193 92308359 + 2 NA Intergenic HAL1|LINE|L1 -204891 NM_175634 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 268-401 chr8 87863670 87863853 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 10254 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 480-243 chr5 147462864 147463181 + 2 NA intron (NM_001197294, intron 1 of 13) ERV3-16A3_I-int|LTR|ERVL -9330 NM_001387 1809 Hs.519659 NM_001387 ENSG00000113657 DPYSL3 CRMP-4|CRMP4|DRP-3|DRP3|LCRMP|ULIP|ULIP-1 dihydropyrimidinase like 3 protein-coding 292-271 chr22 44516414 44516616 + 2 NA Intergenic MER92B|LTR|ERV1 -18282 NM_032287 84247 Hs.744991 NM_032287 ENSG00000188636 RTL6 LDOC1L|Mar6|Mart6|SIRH3|dJ1033E15.2 retrotransposon Gag like 6 protein-coding 153-41 chr17 31171108 31171231 + 2 NA intron (NM_001042492, intron 5 of 57) intron (NM_001042492, intron 5 of 57) 76192 NM_001128147 4763 Hs.113577 NM_000267 ENSG00000196712 NF1 NFNS|VRNF|WSS neurofibromin 1 protein-coding 357-163 chr18 9057873 9058188 + 2 NA Intergenic LTR45B|LTR|ERV1 -44669 NM_021074 4729 Hs.464572 NM_021074 ENSG00000178127 NDUFV2 CI-24k|MC1DN7 NADH:ubiquinone oxidoreductase core subunit V2 protein-coding 416-201 chr20 15280389 15280702 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 83705 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 233-200 chr2 229586112 229586334 + 2 NA intron (NM_139072, intron 3 of 12) intron (NM_139072, intron 3 of 12) 128332 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 351-424 chr6 135959022 135959241 + 2 NA intron (NM_018945, intron 2 of 12) intron (NM_018945, intron 2 of 12) 107430 NM_018945 27115 Hs.744230 NM_018945 ENSG00000171408 PDE7B bA472E5.1 phosphodiesterase 7B protein-coding 285-78 chr12 15570450 15570689 + 2 NA intron (NM_030671, intron 7 of 13) intron (NM_030671, intron 7 of 13) 23958 NM_030670 5800 Hs.160871 NM_002848 ENSG00000151490 PTPRO GLEPP1|NPHS6|PTP-OC|PTP-U2|PTPROT|PTPU2|R-PTP-O protein tyrosine phosphatase receptor type O protein-coding 241-348 chr6 162314225 162314383 + 2 NA intron (NM_004562, intron 2 of 11) intron (NM_004562, intron 2 of 11) -412828 NM_152410 135138 Hs.25791 NM_152410 ENSG00000112530 PACRG GLUP|HAK005771|PACRG2.1|PARK2CRG parkin coregulated protein-coding 142-37 chr2 61987089 61987224 + 2 NA intron (NM_152516, intron 1 of 2) L1MA2|LINE|L1 81514 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 297-20 chr1 103329489 103329716 + 2 NA Intergenic Intergenic 195909 NM_001286997 101928436 Hs.558999 NM_001286997 LOC101928436 - uncharacterized LOC101928436 protein-coding 199-250 chr8 136380442 136380579 + 2 NA Intergenic L1PB1|LINE|L1 -150288 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 328-282 chr2 143751888 143752182 + 2 NA intron (NM_018460, intron 13 of 13) ERV3-16A3_I-int|LTR|ERVL -185032 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 384-22 chr1 190142352 190142626 + 2 NA intron (NM_199051, intron 7 of 7) intron (NM_199051, intron 7 of 7) 333521 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 211-96 chr15 59870890 59871093 + 2 NA Intergenic Intergenic -133320 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 199-181 chr4 92508879 92509034 + 2 NA intron (NM_001286838, intron 1 of 14) AluJr4|SINE|Alu 204557 NM_001286838 2895 Hs.162727 NM_001510 ENSG00000152208 GRID2 GluD2|SCAR18 glutamate ionotropic receptor delta type subunit 2 protein-coding 200-69 chr14 39577492 39577686 + 2 NA Intergenic Intergenic -145089 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 139-24 chr12 60241429 60241541 + 2 NA Intergenic Intergenic 552115 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 305-187 chr16 73460422 73460604 + 2 NA Intergenic L1MD1|LINE|L1 73708 NR_038234 100506172 Hs.434230 NR_038234 ENSG00000258779 LINC01568 - long intergenic non-protein coding RNA 1568 ncRNA 251-99 chr14 72472209 72472431 + 2 NA intron (NM_001370288, intron 8 of 16) intron (NM_001370288, intron 8 of 16) -44500 NR_106994 102465832 NR_106994 ENSG00000273830 MIR7843 hsa-mir-7843 microRNA 7843 ncRNA 337-570 chr8 143409338 143409570 + 2 NA Intergenic Intergenic -8225 NR_126358 104326051 Hs.202140 NR_126358 ENSG00000254338 MAFA-AS1 TCONS_00014882 MAFA antisense RNA 1 ncRNA 487-158 chr2 228616946 228617285 + 2 NA Intergenic L2b|LINE|L2 -5720 NR_151716 101928765 Hs.334040 NR_151716 ENSG00000232023 LINC01807 - long intergenic non-protein coding RNA 1807 ncRNA 220-281 chr5 32189514 32189708 + 2 NA Intergenic AluSx|SINE|Alu -15292 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 328-171 chr15 45973442 45973729 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 268390 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 483-27 chr10 58571048 58571338 + 2 NA intron (NM_001080512, intron 1 of 20) intron (NM_001080512, intron 1 of 20) 58321 NM_001080512 80114 Hs.100261 NM_001080512 ENSG00000122870 BICC1 BICC|CYSRD BicC family RNA binding protein 1 protein-coding 300-306 chr4 8496716 8496904 + 2 NA Intergenic Intergenic 56013 NM_001350233 152992 Hs.566191 NM_024950 ENSG00000155275 TRMT44 C4orf23|METTL19|TRM44 tRNA methyltransferase 44 homolog protein-coding 243-153 chr16 63317745 63317971 + 2 NA Intergenic Intergenic -1281420 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 423-96 chr17 41144430 41144845 + 2 NA intron (NM_001277332, intron 2 of 5) intron (NM_001277332, intron 2 of 5) -4150 NM_030976 81871 Hs.307014 NM_030976 ENSG00000198090 KRTAP4-6 KAP4.15|KAP4.6|KRTAP4-15|KRTAP4.15 keratin associated protein 4-6 protein-coding 350-437 chr6 54284726 54285071 + 2 NA Intergenic Intergenic -23543 NM_014464 27283 Hs.127011 NM_014464 ENSG00000137251 TINAG TIN-AG tubulointerstitial nephritis antigen protein-coding 236-38 chr10 43633650 43633795 + 2 NA intron (NR_038867, intron 1 of 4) L1MDa|LINE|L1 4905 NR_038867 414201 Hs.666576 NR_038867 ENSG00000223910 ZNF32-AS3 C10orf44|ZNF32-OT1|bA402L1.3 ZNF32 antisense RNA 3 ncRNA 320-351 chr3 82526463 82526728 + 2 NA Intergenic Intergenic 540453 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 374-285 chr4 167534053 167534381 + 2 NA Intergenic MLT1H-int|LTR|ERVL-MaLR -299627 NM_001204356 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 290-319 chr4 83341139 83341298 + 2 NA Intergenic MER21A|LTR|ERVL -6065 NM_001166498 10855 Hs.44227 NM_006665 ENSG00000173083 HPSE HPA|HPA1|HPR1|HPSE1|HSE1 heparanase protein-coding 273-413 chr7 11846842 11847076 + 2 NA Intergenic Intergenic -14761 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 405-268 chr5 178710596 178710927 + 2 NA TTS (NM_001324339) TTS (NM_001324339) 19898 NM_005649 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 208-62 chr12 78756649 78756838 + 2 NA Intergenic Intergenic -107239 NM_001135805 6857 Hs.310545 NM_005639 ENSG00000067715 SYT1 BAGOS|P65|SVP65|SYT synaptotagmin 1 protein-coding 327-71 chr11 9874368 9874616 + 2 NA intron (NM_030962, intron 17 of 39) intron (NM_030962, intron 17 of 39) 35350 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 460-246 chr5 116224954 116225237 + 2 NA intron (NM_001308080, intron 5 of 6) L1M4a1|LINE|L1 -30648 NR_162144 113219464 NR_162144 MIR12130 - microRNA 12130 ncRNA 378-120 chr13 76439680 76440006 + 2 NA Intergenic MLT1L|LTR|ERVL-MaLR 446562 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 125-18 chr16 47284938 47285027 + 2 NA intron (NM_030790, intron 10 of 17) intron (NM_030790, intron 10 of 17) 140914 NR_110904 101927102 Hs.634652 NR_110903 ITFG1-AS1 - ITFG1 antisense RNA 1 ncRNA 158-61 chr2 166135210 166135301 + 2 NA intron (NR_110260, intron 2 of 11) intron (NR_110260, intron 2 of 11) -7235 NM_001353948 6323 Hs.22654 NM_006920 ENSG00000144285 SCN1A EIEE6|FEB3|FEB3A|FHM3|GEFSP2|HBSCI|NAC1|Nav1.1|SCN1|SMEI sodium voltage-gated channel alpha subunit 1 protein-coding 295-225 chr2 129691753 129691994 + 2 NA Intergenic L1MB8|LINE|L1 185618 NR_149127 105373615 NR_149127 LINC02572 - long intergenic non-protein coding RNA 2572 ncRNA 335-415 chr5 24123753 24123988 + 2 NA intron (NR_131245, intron 4 of 4) intron (NR_131245, intron 4 of 4) 172522 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 328-112 chr12 83256781 83257004 + 2 NA Intergenic Intergenic 569737 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 406-212 chr4 104580595 104580822 + 2 NA intron (NR_125926, intron 1 of 9) intron (NR_125926, intron 1 of 9) -85814 NR_132741 80319 Hs.12248 NM_025212 ENSG00000168772 CXXC4 IDAX CXXC finger protein 4 protein-coding 305-180 chr16 55614338 55614604 + 2 NA Intergenic Intergenic -41593 NM_001172501 6530 Hs.78036 NM_001043 ENSG00000103546 SLC6A2 NAT1|NET|NET1|SLC6A5 solute carrier family 6 member 2 protein-coding 268-251 chr3 123341645 123341832 + 2 NA intron (NM_183357, intron 3 of 20) L2c|LINE|L2 74604 NM_001199642 111 Hs.593292 NM_183357 ENSG00000173175 ADCY5 AC5|FDFM adenylate cyclase 5 protein-coding 420-99 chr17 48343481 48343736 + 2 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) 49261 NR_131239 105371807 Hs.661105 NR_131239 ENSG00000235300 THRA1/BTR - uncharacterized LOC105371807 ncRNA 316-564 chr8 121685242 121685511 + 2 NA Intergenic Intergenic -43936 NM_005328 3037 Hs.159226 NM_005328 ENSG00000170961 HAS2 - hyaluronan synthase 2 protein-coding 461-2 chr1 37202943 37203334 + 2 NA Intergenic MER47B|DNA|TcMar-Tigger 41575 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 331-407 chr5 8116987 8117241 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 247966 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 272-124 chr14 85644973 85645129 + 2 NA 3' UTR (NM_013231, exon 2 of 2) 3' UTR (NM_013231, exon 2 of 2) 111702 NM_001346143 23768 Hs.533710 NM_013231 ENSG00000185070 FLRT2 - fibronectin leucine rich transmembrane protein 2 protein-coding 305-178 chr16 52550039 52550238 + 2 NA Intergenic Intergenic -2336 NM_001146188 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 348-80 chr11 42269562 42269843 + 2 NA Intergenic L1ME2z|LINE|L1 -16012 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 130-51 chr22 26149222 26149320 + 2 NA Intergenic L1M5|LINE|L1 -20191 NM_001184773 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 517-223 chr5 131969023 131969501 + 2 NA intron (NM_015256, intron 15 of 20) intron (NM_015256, intron 15 of 20) -23599 NM_001303622 728637 Hs.631802 NM_001278059 ENSG00000239642 MEIKIN - meiotic kinetochore factor protein-coding 242-198 chr2 133009301 133009450 + 2 NA intron (NM_207481, intron 6 of 17) intron (NM_207481, intron 6 of 17) 93818 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 616-21 chr10 116611482 116611944 + 2 NA Intergenic Intergenic -9240 NR_103727 5408 Hs.423598 NM_005396 ENSG00000266200 PNLIPRP2 PLRP2 pancreatic lipase related protein 2 (gene/pseudogene) protein-coding 394-210 chr3 29180630 29180891 + 2 NA Intergenic L2|LINE|L2 100179 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 518-300 chr8 102865725 102866221 + 2 NA intron (NR_126338, intron 1 of 3) AluSp|SINE|Alu 1702 NR_126338 100506753 Hs.602901 NR_126338 AZIN1-AS1 - AZIN1 antisense RNA 1 ncRNA 311-354 chr3 155466897 155467105 + 2 NA Intergenic L1MA1|LINE|L1 -18802 NR_146955 100874036 Hs.128933 NR_146955 ENSG00000242925 PLCH1-AS2 - PLCH1 antisense RNA 2 ncRNA 434-82 chr14 64002239 64002578 + 2 NA intron (NM_015180, intron 29 of 114) intron (NM_015180, intron 29 of 114) 92717 NR_031677 100313830 NR_031677 ENSG00000221537 MIR548H1 MIR548H-1|MIRN548H1 microRNA 548h-1 ncRNA 289-352 chr4 172317082 172317284 + 2 NA intron (NM_001034845, intron 4 of 12) intron (NM_001034845, intron 4 of 12) 371734 NR_125895 101928314 Hs.566023 NR_125894 GALNTL6-AS1 - GALNTL6 antisense RNA 1 ncRNA 540-29 chr10 57110644 57111023 + 2 NA Intergenic MLT1E1|LTR|ERVL-MaLR 193726 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 313-467 chr6 63808041 63808322 + 2 NA intron (NR_157848, intron 1 of 1) intron (NR_157848, intron 1 of 1) 1345 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 446-91 chr13 36152134 36152464 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -20360 NM_001330072 9201 Hs.507755 NM_004734 ENSG00000133083 DCLK1 CL1|CLICK1|DCAMKL1|DCDC3A|DCLK doublecortin like kinase 1 protein-coding 232-333 chr6 132396803 132397019 + 2 NA intron (NM_015529, intron 1 of 11) L1M2|LINE|L1 4564 NM_015529 26002 Hs.6909 NM_015529 ENSG00000079931 MOXD1 MOX|PRO5780|dJ248E1.1 monooxygenase DBH like 1 protein-coding 791-15 chr11 60624286 60624895 + 2 NA intron (NR_026946, intron 2 of 6) L1PA13|LINE|L1 8839 NR_026946 283197 Hs.372650 NM_174939 ENSG00000181995 LINC00301 C11orf64|NCRNA00301 long intergenic non-protein coding RNA 301 ncRNA 190-79 chr19 32144888 32145004 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -39030 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 601-119 chr5 33341604 33342080 + 2 NA Intergenic L1PA7|LINE|L1 -98854 NM_001258437 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 447-191 chr4 38496315 38496612 + 2 NA intron (NR_110951, intron 1 of 7) L1ME4a|LINE|L1 -13304 NR_149076 106144599 Hs.582017 NR_149076 ENSG00000249667 LINC01259 TCONS_00007515 long intergenic non-protein coding RNA 1259 ncRNA 322-344 chr3 117637498 117637659 + 2 NA Intergenic Charlie4a|DNA|hAT-Charlie 53347 NR_146652 105374057 Hs.518179 NR_146652 ENSG00000241213 LINC02024 - long intergenic non-protein coding RNA 2024 ncRNA 295-477 chr8 115307018 115307262 + 2 NA Intergenic MLT2E|LTR|ERVL 360873 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 329-214 chr17 34349254 34349536 + 2 NA Intergenic Intergenic -7085 NM_005408 6357 Hs.414629 NM_005408 ENSG00000181374 CCL13 CKb10|MCP-4|NCC-1|NCC1|SCYA13|SCYL1 C-C motif chemokine ligand 13 protein-coding 306-493 chr8 41438554 41438834 + 2 NA Intergenic Intergenic 12039 NR_145746 109616980 NR_145746 ENSG00000238936 SNORD65B - small nucleolar RNA, C/D box 65B snoRNA 397-111 chr16 77025028 77025283 + 2 NA Intergenic MER57A1|LTR|ERV1 156219 NR_039870 100616172 NR_039870 ENSG00000266426 MIR4719 - microRNA 4719 ncRNA 300-201 chr2 103236690 103236899 + 2 NA Intergenic L2a|LINE|L2 -252365 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 154-36 chr15 69488733 69488871 + 2 NA Intergenic L1MC5a|LINE|L1 35984 NM_213725 6176 Hs.356502 NM_001003 ENSG00000137818 RPLP1 LP1|P1|RPP1 ribosomal protein lateral stalk subunit P1 protein-coding 392-53 chr12 22395016 22395358 + 2 NA Intergenic L1MB2|LINE|L1 -60473 NM_001304450 6489 Hs.408614 NM_003034 ENSG00000111728 ST8SIA1 GD3S|SIAT8|SIAT8-A|SIAT8A|ST8SiaI ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1 protein-coding 458-68 chr14 44539871 44540282 + 2 NA Intergenic L1P3|LINE|L1 32667 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 241-421 chr9 25521125 25521350 + 2 NA Intergenic Intergenic 157621 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 423-113 chr18 72299916 72300271 + 2 NA Intergenic Intergenic 244249 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 242-210 chr20 14340445 14340599 + 2 NA intron (NM_001351663, intron 3 of 17) intron (NM_001351663, intron 3 of 17) -2855 NM_013281 23767 Hs.41296 NM_013281 ENSG00000125848 FLRT3 HH21 fibronectin leucine rich transmembrane protein 3 protein-coding 446-16 chr1 114302173 114302409 + 2 NA Intergenic HAL1b|LINE|L1 -148422 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 423-224 chr5 63271225 63271556 + 2 NA Intergenic Intergenic 690902 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 306-345 chr4 28900849 28901014 + 2 NA Intergenic Intergenic 81349 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 303-36 chr10 39219283 39219578 + 2 NA Intergenic ALR/Alpha|Satellite|centr 522834 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 401-272 chr5 155804172 155804401 + 2 NA Intergenic MIR|SINE|MIR -522471 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 283-143 chr14 90954695 90954912 + 2 NA intron (NM_001322238, intron 1 of 14) L1M4b|LINE|L1 105321 NM_001322237 9252 Hs.510225 NM_004755 ENSG00000100784 RPS6KA5 MSK1|MSPK1|RLPK ribosomal protein S6 kinase A5 protein-coding 513-169 chr22 22100854 22101210 + 2 NA Intergenic Intergenic -57098 NR_135291 649179 Hs.553939 NR_135291 ENSG00000197549 PRAMENP PRAMEF24P|PRAMEL PRAME N-terminal like, pseudogene pseudo 271-428 chr8 48314097 48314305 + 2 NA Intergenic Intergenic -237366 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 240-223 chr2 117791876 117792075 + 2 NA Intergenic (TCTT)n|Simple_repeat|Simple_repeat -22716 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 306-194 chr17 54454921 54455214 + 2 NA Intergenic MER57-int|LTR|ERV1 -445624 NM_001321176 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 318-78 chr10 83734462 83734640 + 2 NA Intergenic L1MA8|LINE|L1 -57462 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 384-402 chr9 91934575 91934870 + 2 NA intron (NM_001318204, intron 1 of 7) intron (NM_001318204, intron 1 of 7) 15506 NM_004560 4920 Hs.98255 NM_004560 ENSG00000169071 ROR2 BDB|BDB1|NTRKR2 receptor tyrosine kinase like orphan receptor 2 protein-coding 368-57 chr10 59478061 59478348 + 2 NA Intergenic Intergenic -115023 NM_001347842 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 482-240 chr7 25447785 25448222 + 2 NA Intergenic Intergenic 215137 NR_157829 646588 Hs.72068 NR_157808 ENSG00000223561 LOC646588 - uncharacterized LOC646588 ncRNA 492-233 chr6 137847298 137847642 + 2 NA intron (NR_049793, intron 3 of 3) intron (NR_049793, intron 3 of 3) -19789 NM_001270507 7128 Hs.211600 NM_006290 ENSG00000118503 TNFAIP3 A20|AISBL|OTUD7C|TNFA1P2 TNF alpha induced protein 3 protein-coding 350-207 chr2 22057122 22057338 + 2 NA Intergenic L2a|LINE|L2 -346578 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 260-171 chr17 59916614 59916775 + 2 NA intron (NR_161455, intron 4 of 13) HAL1|LINE|L1 23573 NR_161457 6198 Hs.463642 NM_003161 ENSG00000108443 RPS6KB1 PS6K|S6K|S6K-beta-1|S6K1|STK14A|p70 S6KA|p70(S6K)-alpha|p70-S6K|p70-alpha ribosomal protein S6 kinase B1 protein-coding 589-85 chr3 1593628 1593995 + 2 NA Intergenic MIRb|SINE|MIR 500787 NM_001349357 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 219-301 chr5 168568159 168568348 + 2 NA intron (NM_024594, intron 2 of 6) intron (NM_024594, intron 2 of 6) -7280 NR_029520 406895 NR_029520 ENSG00000199035 MIR103A1 MIR103-1|MIRN103-1|mir-103a-1 microRNA 103a-1 ncRNA 559-92 chr2 62832212 62832688 + 2 NA intron (NM_001142615, intron 7 of 22) (T)n|Simple_repeat|Simple_repeat 125553 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 257-182 chr2 41801809 41801957 + 2 NA Intergenic L1MC2|LINE|L1 -75672 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 304-91 chr11 111362126 111362321 + 2 NA intron (NM_006235, intron 1 of 4) L1MA3|LINE|L1 14466 NR_039712 100616330 NR_039712 ENSG00000264032 MIR4491 mir-4491 microRNA 4491 ncRNA 298-24 chr1 212471727 212471918 + 2 NA Intergenic Intergenic 38902 NM_013349 29937 Hs.461787 NM_013349 ENSG00000117691 NENF CIR2|SCIRP10|SPUF neudesin neurotrophic factor protein-coding 382-397 chr7 147705548 147705819 + 2 NA intron (NM_014141, intron 12 of 22) L1M2|LINE|L1 34004 NR_133929 105375556 Hs.667432 NR_133929 ENSG00000230190 LOC105375556 - uncharacterized LOC105375556 ncRNA 700 chr1 9219234 9219795 + 2 NA Intergenic AluSx|SINE|Alu -15260 NM_004285 9563 Hs.463511 NM_004285 ENSG00000049239 H6PD CORTRD1|G6PDH|GDH hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase protein-coding 557-88 chr2 35675231 35675615 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 204018 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 502-234 chr6 95697534 95697870 + 2 NA Intergenic Intergenic 120167 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 187-34 chr11 120207479 120207602 + 2 NA Intergenic Intergenic -3492 NM_178507 220323 Hs.445081 NM_178507 ENSG00000184232 OAF NS5ATP13TP2 out at first homolog protein-coding 199-66 chr15 92373304 92373496 + 2 NA Intergenic (CTTTT)n|Simple_repeat|Simple_repeat -20481 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 196-161 chr22 26947105 26947244 + 2 NA Intergenic Intergenic 43882 NR_110540 101929539 Hs.517505 NR_110540 ENSG00000235271 LINC01422 - long intergenic non-protein coding RNA 1422 ncRNA 364-290 chr3 183649339 183649575 + 2 NA intron (NM_001349419, intron 3 of 8) L1ME4a|LINE|L1 13834 NM_001349423 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 338-247 chr2 23080902 23081119 + 2 NA Intergenic L1M4b|LINE|L1 -304169 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 350-497 chr7 126645598 126645809 + 2 NA intron (NM_001371085, intron 7 of 10) intron (NM_001371085, intron 7 of 10) 412481 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 317-406 chr6 4483736 4483979 + 2 NA Intergenic MLT2D|LTR|ERVL -4941 NR_149117 105374895 Hs.436882 NR_149117 LINC02533 - long intergenic non-protein coding RNA 2533 ncRNA 665-83 chr6 2533088 2533534 + 2 NA Intergenic FLAM_C|SINE|Alu -101189 NR_149118 105374885 NR_149118 LINC02521 - long intergenic non-protein coding RNA 2521 ncRNA 250-458 chr9 90531572 90531755 + 2 NA intron (NR_034157, intron 1 of 5) intron (NR_034157, intron 1 of 5) 51083 NR_034157 340515 Hs.522284 NM_001105317 LINC01501 - long intergenic non-protein coding RNA 1501 ncRNA 636-73 chr2 66872267 66872682 + 2 NA Intergenic Intergenic -31962 NR_110169 101060019 Hs.116425 NR_110169 ENSG00000230525 LINC01799 - long intergenic non-protein coding RNA 1799 ncRNA 327-256 chr2 51037800 51038012 + 2 NA intron (NR_135237, intron 1 of 10) intron (NR_135237, intron 1 of 10) 5305 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 249-214 chr2 136271013 136271203 + 2 NA Intergenic L1MA10|LINE|L1 -152953 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 275-74 chr11 123912900 123913075 + 2 NA Intergenic L1MA2|LINE|L1 6555 NM_001005197 338662 Hs.449688 NM_001005197 ENSG00000181518 OR8D4 OR11-275 olfactory receptor family 8 subfamily D member 4 protein-coding 258-199 chr2 118512405 118512561 + 2 NA Intergenic L4_A_Mam|LINE|RTE-X 90483 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 369-115 chr14 56532823 56533130 + 2 NA intron (NR_135241, intron 1 of 1) intron (NR_135241, intron 1 of 1) 18645 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 273-393 chr6 101265213 101265351 + 2 NA Intergenic Intergenic -133703 NM_021956 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 556-172 chr5 12898977 12899438 + 2 NA intron (NR_147005, intron 4 of 4) intron (NR_147005, intron 4 of 4) 133679 NR_147005 105374658 NR_147005 LINC02220 - long intergenic non-protein coding RNA 2220 ncRNA 467-107 chr17 66132786 66133114 + 2 NA intron (NM_001353129, intron 4 of 26) AluSx1|SINE|Alu 58942 NM_001302891 201134 Hs.408676 NM_145036 ENSG00000154240 CEP112 CCDC46|MACOCO centrosomal protein 112 protein-coding 307-118 chr13 47146980 47147199 + 2 NA Intergenic Intergenic -250013 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 235-385 chr9 29788978 29789136 + 2 NA Intergenic Intergenic -575456 NM_001258282 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 564-206 chr8 138224735 138225093 + 2 NA intron (NM_015912, intron 7 of 19) L1MA7|LINE|L1 -141369 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 295-306 chr3 118355992 118356257 + 2 NA Intergenic Intergenic -285644 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 312-94 chr12 1768622 1768807 + 2 NA intron (NM_024551, intron 2 of 7).2 intron (NM_024551, intron 2 of 7).2 -51553 NM_001163925 654429 Hs.585579 NM_001039029 ENSG00000166159 LRTM2 - leucine rich repeats and transmembrane domains 2 protein-coding 248-241 chr3 51587644 51587822 + 2 NA intron (NM_001322253, intron 3 of 23) (TTTTC)n|Simple_repeat|Simple_repeat 46144 NM_001322257 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 284-132 chr15 54905068 54905283 + 2 NA Intergenic Intergenic -151572 NR_135679 105370829 Hs.174934 NR_135679 ENSG00000260937 LOC105370829 - uncharacterized LOC105370829 ncRNA 546-203 chr6 6597593 6597986 + 2 NA intron (NM_004271, intron 1 of 4) intron (NM_004271, intron 1 of 4) 9069 NM_004271 9450 Hs.653138 NM_004271 ENSG00000112799 LY86 MD-1|MD1|MMD-1|dJ80N2.1 lymphocyte antigen 86 protein-coding 249-447 chr9 74385154 74385354 + 2 NA Intergenic Intergenic 13723 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 592-32 chr12 34662055 34662442 + 2 NA Intergenic ALR/Alpha|Satellite|centr 639752 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 307-86 chr11 77448701 77448913 + 2 NA intron (NM_001128620, intron 1 of 15) intron (NM_001128620, intron 1 of 15) 25256 NM_001128620 5058 Hs.435714 NM_002576 ENSG00000149269 PAK1 IDDMSSD|PAKalpha p21 (RAC1) activated kinase 1 protein-coding 340-378 chr3 162432276 162432597 + 2 NA Intergenic L1MA3|LINE|L1 870865 NR_033945 647107 Hs.408584 NR_033945 ENSG00000241369 LINC01192 CT64 long intergenic non-protein coding RNA 1192 ncRNA 489-30 chr10 78720132 78720522 + 2 NA Intergenic Intergenic 347121 NR_024431 283050 Hs.309176 NR_015429 ENSG00000224596 ZMIZ1-AS1 - ZMIZ1 antisense RNA 1 ncRNA 232-292 chr5 17838144 17838370 + 2 NA intron (NR_134286, intron 2 of 7) L1MEc|LINE|L1 30983 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 210-105 chr18 34108849 34108977 + 2 NA intron (NM_001353232, intron 2 of 9) L1MA4|LINE|L1 -60301 NM_001353236 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 238-365 chr7 120007545 120007768 + 2 NA Intergenic L1MA8|LINE|L1 -100281 NR_131961 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 305-325 chr22 24924388 24924561 + 2 NA 3' UTR (NM_001039948, exon 26 of 26) 3' UTR (NM_001039948, exon 26 of 26) 22221 NM_001001663 255349 Hs.329040 NM_001001663 ENSG00000206069 TMEM211 bA9F11.1 transmembrane protein 211 protein-coding 210-61 chr12 80511546 80511711 + 2 NA intron (NM_001145026, intron 17 of 44) L2a|LINE|L2 67393 NM_001145026 374462 Hs.539284 NM_001145026 ENSG00000139304 PTPRQ DFNA73|DFNB84|DFNB84A|PTPGMC1|R-PTP-Q protein tyrosine phosphatase receptor type Q protein-coding 210-279 chr8 62082684 62082886 + 2 NA Intergenic Intergenic -166069 NR_130764 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 339-483 chr5 179087856 179088117 + 2 NA Intergenic Intergenic 27613 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 562-39 chr11 124929915 124930413 + 2 NA intron (NM_152722, intron 1 of 6) CR1_Mam|LINE|CR1 5883 NM_152722 220296 Hs.745294 NM_152722 ENSG00000165478 HEPACAM GlialCAM|HEPN1|MLC2A|MLC2B hepatic and glial cell adhesion molecule protein-coding 339-571 chr8 82010944 82011278 + 2 NA Intergenic Intergenic -168825 NM_022133 64089 Hs.492121 NM_022133 ENSG00000104497 SNX16 - sorting nexin 16 protein-coding 262-406 chr7 96177877 96178131 + 2 NA intron (NM_001160210, intron 11 of 17) intron (NM_001160210, intron 11 of 17) 41752 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 236-109 chr14 37377968 37378162 + 2 NA intron (NM_138731, intron 11 of 13) L1MD2|LINE|L1 180128 NM_001195296 145282 Hs.660396 NM_138731 ENSG00000151338 MIPOL1 CCDC193 mirror-image polydactyly 1 protein-coding 256-330 chr5 105788491 105788701 + 2 NA Intergenic MER47A|DNA|TcMar-Tigger 689122 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 395-308 chr7 22625587 22625921 + 2 NA Intergenic L3|LINE|CR1 39779 NR_122075 401312 Hs.583393 NR_122075 ENSG00000105889 LOC401312 - uncharacterized LOC401312 ncRNA 309-155 chr14 62693406 62693686 + 2 NA Intergenic Intergenic 351912 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 347-534 chr8 136363622 136363885 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -167045 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 281-453 chr9 669205 669414 + 2 NA intron (NM_001256877, intron 2 of 12) L1MA4|LINE|L1 -17458 NM_001354336 23189 Hs.306764 NM_015158 ENSG00000107104 KANK1 ANKRD15|CPSQ2|KANK KN motif and ankyrin repeat domains 1 protein-coding 217-71 chr11 77050091 77050254 + 2 NA Intergenic AluSq|SINE|Alu 15774 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 307-97 chr12 9759867 9760071 + 2 NA intron (NM_001781, intron 1 of 4) intron (NM_001781, intron 1 of 4) 932 NM_001781 969 Hs.208854 NM_001781 ENSG00000110848 CD69 AIM|BL-AC/P26|CLEC2C|EA1|GP32/28|MLR-3 CD69 molecule protein-coding 465-159 chr20 55921142 55921561 + 2 NA Intergenic LTR28C|LTR|ERV1 84168 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 326-259 chr2 123621077 123621301 + 2 NA Intergenic L1PB1|LINE|L1 403985 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 482-164 chr3 68523448 68523814 + 2 NA intron (NM_001252216, intron 3 of 4) intron (NM_001252216, intron 3 of 4) 22994 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 612-10 chr10 8356795 8357379 + 2 NA Intergenic Intergenic -88782 NR_108058 100507143 Hs.258979 NR_108058 ENSG00000232170 LINC00708 GS1-756B1.2 long intergenic non-protein coding RNA 708 ncRNA 567-68 chr16 78866973 78867371 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 733565 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 250-443 chr8 123882146 123882327 + 2 NA intron (NM_001039112, intron 1 of 40) intron (NM_001039112, intron 1 of 40) 30249 NM_001039112 654463 Hs.632058 NM_001039112 ENSG00000214814 FER1L6 C8ORFK23 fer-1 like family member 6 protein-coding 332-484 chr7 45672166 45672421 + 2 NA intron (NM_021116, intron 8 of 19) L1MD1|LINE|L1 96725 NR_024271 641977 Hs.723477 NR_024271 ENSG00000214765 SEPTIN7P2 SEPT13|SEPT7B|SEPT7P2 septin 7 pseudogene 2 pseudo 298-183 chr18 75970545 75970791 + 2 NA Intergenic Intergenic -152330 NR_040034 339298 Hs.151215 NR_040034 ENSG00000263547 LOC339298 - uncharacterized LOC339298 ncRNA 308-360 chr4 132363759 132363939 + 2 NA Intergenic MLT1E2|LTR|ERVL-MaLR -227240 NR_126401 104355285 Hs.123483 NR_126401 ENSG00000251398 LINC01256 TCONS_l2_00021715 long intergenic non-protein coding RNA 1256 ncRNA 565-76 chr2 52873402 52873847 + 2 NA Intergenic Intergenic -171009 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 531-207 chr5 179921181 179921705 + 2 NA Intergenic L1ME1|LINE|L1 -13546 NM_198868 23061 Hs.155829 NM_015043 ENSG00000197226 TBC1D9B GRAMD9B TBC1 domain family member 9B protein-coding 211-253 chr6 3601113 3601289 + 2 NA Intergenic L1M2|LINE|L1 -144642 NM_001286456 63027 Hs.713588 NM_015482 ENSG00000137266 SLC22A23 C6orf85 solute carrier family 22 member 23 protein-coding 233-238 chr3 85567529 85567712 + 2 NA intron (NM_001256503, intron 2 of 9) MLT2B3|LTR|ERVL 62561 NM_001256504 253559 Hs.164578 NM_153184 ENSG00000175161 CADM2 IGSF4D|NECL3|Necl-3|SynCAM 2|synCAM2 cell adhesion molecule 2 protein-coding 235-243 chr4 2106710 2106868 + 2 NA intron (NM_181808, intron 19 of 25) L1M5|LINE|L1 47462 NM_178557 339983 Hs.318529 NM_178557 ENSG00000185818 NAT8L CML3|NACED|NAT8-LIKE N-acetyltransferase 8 like protein-coding 234-207 chr2 240068972 240069201 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -23014 NM_173351 150681 Hs.626616 NM_173351 ENSG00000178586 OR6B3 OR6B3P|OR6B3Q olfactory receptor family 6 subfamily B member 3 protein-coding 320-293 chr2 213633838 213634003 + 2 NA intron (NR_047660, intron 9 of 14) L1M1|LINE|L1 -124147 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 494-265 chr7 43357805 43358233 + 2 NA intron (NM_001287059, intron 4 of 27) intron (NM_001287059, intron 4 of 27) 164523 NR_038276 100506895 Hs.676047 NR_038276 ENSG00000231638 LUARIS SCAT6|lncRNA32 lncRNA upregulator of antiviral response interferon signaling ncRNA 224-308 chr8 5649889 5650032 + 2 NA Intergenic Intergenic -655046 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 513-128 chr2 64773157 64773550 + 2 NA Intergenic Intergenic 90278 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 307-421 chr6 48728213 48728407 + 2 NA Intergenic MER21-int|LTR|ERVL -659621 NM_207499 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 316-73 chr10 66725785 66726036 + 2 NA intron (NM_001127384, intron 9 of 17) intron (NM_001127384, intron 9 of 17) -200126 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 402-122 chr18 21918245 21918567 + 2 NA Intergenic L1M5|LINE|L1 -87000 NR_110369 102723167 Hs.658808 NR_110369 ENSG00000265142 MIR133A1HG MIR1-2HG MIR133A1 host gene ncRNA 410-307 chr8 84579948 84580245 + 2 NA intron (NM_001354308, intron 3 of 9) MER33|DNA|hAT-Charlie -125831 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 369-160 chr18 6325185 6325527 + 2 NA intron (NM_001365765, intron 1 of 18) L1ME3F|LINE|L1 33674 NR_158611 91133 Hs.128279 NM_173464 ENSG00000154655 L3MBTL4 HsT1031 L3MBTL histone methyl-lysine binding protein 4 protein-coding 367-212 chr2 108946713 108947016 + 2 NA intron (NM_022336, intron 1 of 11) THE1D|LTR|ERVL-MaLR 42356 NM_022336 10913 Hs.171971 NM_022336 ENSG00000135960 EDAR DL|ECTD10A|ECTD10B|ED1R|ED3|ED5|EDA-A1R|EDA1R|EDA3|HRM1 ectodysplasin A receptor protein-coding 260-72 chr11 12465399 12465565 + 2 NA intron (NM_018222, intron 1 of 12) L1MC3|LINE|L1 87911 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 472-237 chr4 145951467 145951841 + 2 NA Intergenic Intergenic -12831 NM_178835 152485 Hs.133916 NM_178835 ENSG00000151612 ZNF827 - zinc finger protein 827 protein-coding 181-104 chr4 53807975 53808152 + 2 NA Intergenic L1MA9|LINE|L1 112162 NR_125918 100506444 Hs.636176 NR_125918 ENSG00000249341 LOC100506444 - uncharacterized LOC100506444 ncRNA 322-178 chr15 68242228 68242440 + 2 NA Intergenic L1MA4|LINE|L1 -12606 NM_017882 54982 Hs.584921 NM_017882 ENSG00000128973 CLN6 CLN4A|HsT18960|nclf CLN6 transmembrane ER protein protein-coding 232-5 chr1 49633333 49633462 + 2 NA intron (NR_136623, intron 2 of 12) L2a|LINE|L2 -161312 NR_046839 100874313 Hs.551277 NR_046839 ENSG00000225623 AGBL4-IT1 - AGBL4 intronic transcript 1 ncRNA 569-119 chr3 78471169 78471562 + 2 NA Intergenic L1PA16|LINE|L1 -422402 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 249-314 chr5 4194514 4194684 + 2 NA Intergenic Intergenic -578882 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 338-504 chr7 52139294 52139562 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR -746172 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 338-332 chr3 53618339 53618588 + 2 NA intron (NM_001128840, intron 3 of 47) intron (NM_001128840, intron 3 of 47) 123852 NM_001128839 776 Hs.476358 NM_000720 ENSG00000157388 CACNA1D CACH3|CACN4|CACNL1A2|CCHL1A2|Cav1.3|PASNA|SANDD calcium voltage-gated channel subunit alpha1 D protein-coding 219-140 chr18 4566154 4566334 + 2 NA Intergenic L1M5|LINE|L1 -110937 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 452-48 chr11 96604555 96604932 + 2 NA Intergenic Intergenic 96318 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 301-339 chr4 156553602 156553850 + 2 NA Intergenic L1M2|LINE|L1 418073 NR_036641 56034 Hs.570855 NM_016205 ENSG00000145431 PDGFC FALLOTEIN|SCDGF platelet derived growth factor C protein-coding 326-436 chr5 164074887 164075177 + 2 NA Intergenic Intergenic 392370 NR_105064 101927835 Hs.735171 NR_105064 ENSG00000253236 LINC02143 - long intergenic non-protein coding RNA 2143 ncRNA 472-79 chr14 30945354 30945740 + 2 NA intron (NM_001083893, intron 5 of 17) AluJb|SINE|Alu -55739 NR_038356 100506071 Hs.729195 NR_038356 ENSG00000258525 LOC100506071 - uncharacterized LOC100506071 ncRNA 286-215 chr2 122687354 122687597 + 2 NA Intergenic Intergenic 386006 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 410-20 chr1 194284999 194285392 + 2 NA Intergenic Intergenic 980450 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 401-50 chr11 29394560 29394863 + 2 NA Intergenic Intergenic -199702 NR_149107 105376606 Hs.577275 NR_149106 ENSG00000255117 LINC02546 - long intergenic non-protein coding RNA 2546 ncRNA 177-82 chr2 185508444 185508597 + 2 NA Intergenic Intergenic 230199 NR_110215 101927196 Hs.244783 NR_110214 ENSG00000226747 FSIP2-AS2 - FSIP2 antisense RNA 2 ncRNA 296-433 chr7 34100148 34100361 + 2 NA intron (NM_133468, intron 14 of 15) L2a|LINE|L2 194715 NM_001365308 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 234-68 chr11 115652662 115652842 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 82010 NR_135066 101928985 Hs.398155 NR_135066 LOC101928985 - uncharacterized LOC101928985 ncRNA 344-440 chr6 148046349 148046638 + 2 NA Intergenic Intergenic -225835 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 327-388 chr5 16022598 16022794 + 2 NA Intergenic Intergenic 87514 NR_030616 100126347 NR_030616 ENSG00000216077 MIR887 MIRN887|hsa-mir-887 microRNA 887 ncRNA 361-254 chr20 40080989 40081263 + 2 NA Intergenic HAL1ME|LINE|L1 76665 NR_109937 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 541-165 chr4 36561642 36562024 + 2 NA intron (NR_149124, intron 3 of 4) L1MB2|LINE|L1 80067 NR_149124 105374400 Hs.570781 NR_149124 ENSG00000248215 LINC02505 - long intergenic non-protein coding RNA 2505 ncRNA 299-323 chr4 61947687 61947963 + 2 NA intron (NM_001371343, intron 15 of 23) intron (NM_001371343, intron 15 of 23) 213940 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 461-281 chr8 135447128 135447554 + 2 NA Intergenic Intergenic -10115 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 220-51 chr10 76442080 76442278 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -445865 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 305-170 chr15 47183083 47183257 + 2 NA promoter-TSS (NM_001198999) promoter-TSS (NM_001198999) -919 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 237-303 chr5 100825747 100825932 + 2 NA intron (NM_005668, intron 4 of 4) intron (NM_005668, intron 4 of 4) -9274 NR_031686 100302288 NR_031686 ENSG00000221263 MIR548P MIRN548P|hsa-mir-548p microRNA 548p ncRNA 260-366 chr5 174260622 174260812 + 2 NA Intergenic L3|LINE|CR1 -75637 NR_125806 101928176 Hs.436014 NR_125806 ENSG00000249306 LINC01411 - long intergenic non-protein coding RNA 1411 ncRNA 407-337 chr8 139366404 139366634 + 2 NA Intergenic AluSz|SINE|Alu 336604 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 355-41 chr10 33495692 33496007 + 2 NA Intergenic AluSz|SINE|Alu -160944 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 308-455 chr7 24623710 24623933 + 2 NA intron (NM_016447, intron 3 of 12) intron (NM_016447, intron 3 of 12) 50369 NM_016447 51678 Hs.533355 NM_016447 ENSG00000105926 MPP6 PALS2|VAM-1|VAM1|p55T membrane palmitoylated protein 6 protein-coding 721-78 chr7 36855269 36855845 + 2 NA exon (NM_130442, exon 7 of 7) exon (NM_130442, exon 7 of 7) 63875 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 659-133 chrX 55412549 55413034 + 2 NA Intergenic AluJb|SINE|Alu -38704 NR_130469 100847061 NR_130469 ENSG00000266328 MIR4536-2 - microRNA 4536-2 ncRNA 255-456 chr9 28847907 28848052 + 2 NA intron (NM_001354574, intron 2 of 5) (AT)n|Simple_repeat|Simple_repeat 15727 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 663-120 chr8 135044575 135045010 + 2 NA Intergenic Intergenic -189339 NR_120396 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 455-217 chr5 51565695 51565947 + 2 NA Intergenic Intergenic 182373 NM_002202 3670 Hs.505 NM_002202 ENSG00000016082 ISL1 ISLET1|Isl-1 ISL LIM homeobox 1 protein-coding 309-436 chr5 53956797 53956977 + 2 NA intron (NM_019087, intron 4 of 4) L1M4|LINE|L1 -5288 NR_030307 693166 NR_030307 ENSG00000207627 MIR581 MIRN581|hsa-mir-581 microRNA 581 ncRNA 385-261 chr4 23185495 23185865 + 2 NA Intergenic L1ME1|LINE|L1 471591 NR_102357 57733 Hs.653107 NM_020973 ENSG00000249948 GBA3 CBG|CBGL1|GLUC|KLRP glucosylceramidase beta 3 (gene/pseudogene) protein-coding 352-16 chr1 88142038 88142281 + 2 NA Intergenic Tigger13a|DNA|TcMar-Tigger -541985 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 454-3 chr1 27806779 27807119 + 2 NA intron (NM_177424, intron 4 of 8) THE1D|LTR|ERVL-MaLR -23833 NM_138558 5511 Hs.533474 NM_002713 ENSG00000117751 PPP1R8 ARD-1|ARD1|NIPP-1|NIPP1|PRO2047 protein phosphatase 1 regulatory subunit 8 protein-coding 376-318 chr5 35638315 35638634 + 2 NA intron (NM_144722, intron 2 of 9) L2c|LINE|L2 20611 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 411-65 chr12 3612151 3612505 + 2 NA Intergenic Intergenic -119509 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 250-298 chr4 290124 290349 + 2 NA intron (NM_001137608, intron 3 of 3) L1MA9|LINE|L1 15238 NM_001137608 654254 Hs.698668 NM_001137608 ENSG00000186777 ZNF732 - zinc finger protein 732 protein-coding 278-413 chr8 77199681 77199952 + 2 NA Intergenic Intergenic -198772 NM_001172087 5828 Hs.437966 NM_000318 ENSG00000164751 PEX2 PAF1|PBD5A|PBD5B|PMP3|PMP35|PXMP3|RNF72|ZWS3 peroxisomal biogenesis factor 2 protein-coding 991-16 chr3 78243224 78243891 + 2 NA Intergenic L2|LINE|L2 -194594 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 273-360 chr5 83137578 83137842 + 2 NA intron (NM_001318012, intron 3 of 7) MIR|SINE|MIR 60163 NM_001318012 7518 Hs.567359 NM_003401 ENSG00000152422 XRCC4 SSMED X-ray repair cross complementing 4 protein-coding 537-71 chr14 81966488 81966978 + 2 NA Intergenic Intergenic -223595 NR_146498 102724294 NR_146498 ENSG00000258718 LINC02311 - long intergenic non-protein coding RNA 2311 ncRNA 239-65 chr11 107520147 107520349 + 2 NA intron (NM_138775, intron 10 of 11) L2a|LINE|L2 45487 NM_138775 91801 Hs.503763 NM_138775 ENSG00000137760 ALKBH8 ABH8|TRM9|TRMT9|TRMT9A alkB homolog 8, tRNA methyltransferase protein-coding 523-110 chr18 5327500 5327907 + 2 NA Intergenic L1PA11|LINE|L1 -30650 NM_001243704 7541 Hs.592340 NM_003409 ENSG00000198081 ZBTB14 ZF5|ZFP-161|ZFP-5|ZFP161|ZNF478 zinc finger and BTB domain containing 14 protein-coding 204-315 chrX 93371209 93371368 + 2 NA Intergenic L1M3d|LINE|L1 302290 NM_004538 4675 Hs.21365 NM_004538 ENSG00000186310 NAP1L3 MB20|NPL3 nucleosome assembly protein 1 like 3 protein-coding 224-268 chr5 169519410 169519604 + 2 NA Intergenic MIR|SINE|MIR -64266 NM_017785 54908 Hs.368710 NM_017785 ENSG00000040275 SPDL1 CCDC99 spindle apparatus coiled-coil protein 1 protein-coding 243-231 chr2 123805589 123805762 + 2 NA Intergenic Intergenic 219499 NR_147976 107985820 Hs.637705 NR_147976 LOC107985820 - uncharacterized LOC107985820 ncRNA 484-119 chr2 29960849 29961256 + 2 NA Intergenic Intergenic -39466 NM_004304 238 Hs.654469 NM_004304 ENSG00000171094 ALK CD246|NBLST3 ALK receptor tyrosine kinase protein-coding 312-332 chr3 70851588 70851791 + 2 NA Intergenic Intergenic 213235 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 241-266 chr4 60402471 60402636 + 2 NA Intergenic Intergenic -520066 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 692-114 chrX 74138259 74138891 + 2 NA intron (NR_028379, intron 5 of 6) intron (NR_028379, intron 5 of 6) 79886 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 285-384 chr7 39408073 39408301 + 2 NA intron (NM_001370959, intron 6 of 9) intron (NM_001370959, intron 6 of 9) -1841 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 336-459 chr5 97616105 97616353 + 2 NA intron (NR_105028, intron 2 of 3) Tigger13a|DNA|TcMar-Tigger 111533 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 193-114 chr2 125002521 125002658 + 2 NA Intergenic L1MA4|LINE|L1 977302 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 219-154 chr19 35162154 35162309 + 2 NA intron (NM_014164, intron 5 of 8) intron (NM_014164, intron 5 of 8) 7496 NM_144779 53827 Hs.333418 NM_014164 ENSG00000089327 FXYD5 DYSAD|HSPC113|IWU1|KCT1|OIT2|PRO6241|RIC FXYD domain containing ion transport regulator 5 protein-coding 216-44 chr10 95569739 95569927 + 2 NA Intergenic L1MB7|LINE|L1 -8462 NM_024991 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 343-91 chr12 1889967 1890275 + 2 NA intron (NM_172364, intron 6 of 37).2 L1MA4A|LINE|L1 28531 NM_172364 93589 Hs.13768 NM_172364 ENSG00000151062 CACNA2D4 RCD4 calcium voltage-gated channel auxiliary subunit alpha2delta 4 protein-coding 534-26 chr10 30321377 30321752 + 2 NA intron (NM_018109, intron 6 of 8) intron (NM_018109, intron 6 of 8) 27774 NM_018109 55149 Hs.173946 NM_018109 ENSG00000107951 MTPAP PAPD1|SPAX4|TENT6 mitochondrial poly(A) polymerase protein-coding 334-58 chr10 65655352 65655553 + 2 NA intron (NR_120647, intron 3 of 5) L1PA15|LINE|L1 84027 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 326-174 chr15 76042423 76042699 + 2 NA Intergenic L1MA3|LINE|L1 -17424 NM_152335 123591 Hs.661411 NM_152335 ENSG00000169758 TMEM266 C15orf27|HVRP1|HsHVRP1|hTMEM266 transmembrane protein 266 protein-coding 234-363 chr7 45532616 45532781 + 2 NA Intergenic Intergenic -41442 NM_001281768 107 Hs.192215 NM_021116 ENSG00000164742 ADCY1 AC1|DFNB44 adenylate cyclase 1 protein-coding 235-127 chr16 63896195 63896381 + 2 NA Intergenic L2a|LINE|L2 1225775 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 317-5 chr1 37186132 37186402 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity 24704 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 217-54 chr10 107482173 107482388 + 2 NA Intergenic LTR18B|LTR|ERVL -317574 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 553-235 chr8 117394047 117394577 + 2 NA Intergenic L1MC4|LINE|L1 -126401 NM_001363182 90390 Hs.492612 NM_080651 ENSG00000164758 MED30 MED30S|THRAP6|TRAP25 mediator complex subunit 30 protein-coding 338-581 chr9 27741606 27741841 + 2 NA Intergenic L1PA14|LINE|L1 -167857 NM_145005 203228 Hs.493639 NM_018325 ENSG00000147894 C9orf72 ALSFTD|DENND9|DENNL72|FTDALS|FTDALS1 C9orf72-SMCR8 complex subunit protein-coding 242-424 chr9 16926628 16926822 + 2 NA Intergenic Intergenic -56055 NM_001317940 54796 Hs.656581 NM_017637 ENSG00000173068 BNC2 BSN2 basonuclin 2 protein-coding 277-181 chr2 31206923 31207148 + 2 NA intron (NM_001321270, intron 2 of 21) MIR3|SINE|MIR 10480 NM_001145122 440854 Hs.468059 NM_001145122 ENSG00000214711 CAPN14 - calpain 14 protein-coding 250-454 chr9 30766000 30766177 + 2 NA Intergenic L1M1|LINE|L1 -357634 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 198-123 chr2 72628729 72628874 + 2 NA intron (NR_135774, intron 6 of 19) MLT1A0|LTR|ERVL-MaLR 197232 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 500-204 chr4 63068030 63068345 + 2 NA Intergenic L1MC1|LINE|L1 -906422 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 319-574 chr9 76679291 76679481 + 2 NA intron (NM_001308048, intron 9 of 17) L1MB2|LINE|L1 13029 NM_001308051 158471 Hs.262857 NM_015225 ENSG00000106772 PRUNE2 BMCC1|BNIPXL|C9orf65|KIAA0367 prune homolog 2 with BCH domain protein-coding 342-200 chr18 4745446 4745630 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -290231 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 545-116 chr2 117073535 117074049 + 2 NA Intergenic Intergenic -740899 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 446-310 chr8 109776859 109777247 + 2 NA Intergenic L1PA6|LINE|L1 -85262 NM_001099744 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 266-351 chr5 163675441 163675637 + 2 NA Intergenic L1MD|LINE|L1 169920 NM_013283 27430 Hs.54642 NM_013283 ENSG00000038274 MAT2B MAT-II|MATIIbeta|Nbla02999|SDR23E1|TGR methionine adenosyltransferase 2B protein-coding 316-201 chr16 52031863 52032063 + 2 NA intron (NM_001242473, intron 3 of 5) intron (NM_001242473, intron 3 of 5) 41972 NM_001242473 388276 Hs.534669 NM_001242473 C16orf97 - chromosome 16 open reading frame 97 protein-coding 146-17 chr11 74153311 74153408 + 2 NA intron (NM_001286577, intron 3 of 32) L1MEc|LINE|L1 17643 NM_015531 26005 Hs.557938 NM_015531 ENSG00000168014 C2CD3 OFD14 C2 domain containing 3 centriole elongation regulator protein-coding 354-356 chr5 6915036 6915260 + 2 NA Intergenic Intergenic -87227 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 326-133 chr12 133054465 133054720 + 2 NA intron (NM_001127372, intron 4 of 4) Kanga2_a|DNA|TcMar-Tc2 17010 NM_001289972 7637 Hs.445019 NM_003428 ENSG00000198040 ZNF84 HPF2 zinc finger protein 84 protein-coding 233-176 chr2 107498397 107498571 + 2 NA Intergenic Intergenic -30935 NR_146968 105373537 NR_146968 ENSG00000224568 LINC01886 - long intergenic non-protein coding RNA 1886 ncRNA 274-6 chr1 72794764 72794950 + 2 NA Intergenic Intergenic -511313 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 505-30 chr10 76531238 76531577 + 2 NA intron (NM_001305581, intron 6 of 6) L1MD|LINE|L1 -356637 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 314-304 chr2 128723784 128724038 + 2 NA Intergenic Intergenic -140689 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 119-14 chr13 35519603 35519673 + 2 NA intron (NM_001204197, intron 1 of 17) intron (NM_001204197, intron 1 of 17) 42889 NM_001204197 26960 Hs.491172 NM_015678 ENSG00000172915 NBEA BCL8B|LYST2 neurobeachin protein-coding 579-129 chr5 30644530 30644969 + 2 NA Intergenic Intergenic -548937 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 192-13 chr1 203813380 203813563 + 2 NA intron (NM_014827, intron 4 of 19) L1MC|LINE|L1 15948 NM_001174108 100381270 NM_001174108 ENSG00000257315 ZBED6 MGR zinc finger BED-type containing 6 protein-coding 572-159 chr7 3787528 3787962 + 2 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) -341940 NM_001079653 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 487-144 chr2 84636922 84637366 + 2 NA intron (NM_001370, intron 30 of 76) intron (NM_001370, intron 30 of 76) 120689 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 322-445 chr5 169391601 169391813 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -90568 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 250-206 chr2 71325213 71325443 + 2 NA Intergenic Intergenic -6427 NM_001252613 27332 Hs.434401 NM_014497 ENSG00000075292 ZNF638 NP220|ZFML|Zfp638 zinc finger protein 638 protein-coding 450-302 chr8 101958359 101958800 + 2 NA intron (NM_001040624, intron 3 of 7) MIR|SINE|MIR -25853 NR_126152 104054148 Hs.683917 NR_126152 LOC104054148 - uncharacterized LOC104054148 ncRNA 230-279 chr4 170376367 170376555 + 2 NA Intergenic L1PA15-16|LINE|L1 149870 NR_125889 101928223 Hs.254617 NR_125889 LINC01612 - long intergenic non-protein coding RNA 1612 ncRNA 196-219 chr5 179107050 179107188 + 2 NA Intergenic L1M4|LINE|L1 46746 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 377-79 chr12 5663387 5663732 + 2 NA intron (NM_001278596, intron 15 of 25) intron (NM_001278596, intron 15 of 25) 169427 NM_002527 4908 Hs.99171 NM_002527 ENSG00000185652 NTF3 HDNF|NGF-2|NGF2|NT-3|NT3 neurotrophin 3 protein-coding 202-77 chr14 82507699 82507853 + 2 NA Intergenic L2a|LINE|L2 -134856 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 148-2 chr1 20134382 20134477 + 2 NA Intergenic L1M4|LINE|L1 -4894 NM_022819 64600 Hs.302034 NM_022819 ENSG00000158786 PLA2G2F GIIFsPLA2|sPLA2-IIF phospholipase A2 group IIF protein-coding 428-24 chr10 61557191 61557436 + 2 NA Intergenic L1MA9|LINE|L1 77272 NR_120644 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 201-69 chr12 124285932 124286104 + 2 NA intron (NM_001347902, intron 3 of 4) intron (NM_001347902, intron 3 of 4) -3146 NM_181709 144347 Hs.432901 NM_181709 ENSG00000178882 RFLNA CFM2|FAM101A refilin A protein-coding 284-442 chr9 79375963 79376169 + 2 NA Intergenic Intergenic -195707 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 170-44 chr14 40188422 40188542 + 2 NA Intergenic L1ME4a|LINE|L1 -755982 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 363-13 chr1 109252553 109252886 + 2 NA exon (NM_001408, exon 1 of 34) exon (NM_001408, exon 1 of 34) 3180 NM_001408 1952 Hs.57652 NM_001408 ENSG00000143126 CELSR2 ADGRC2|CDHF10|EGFL2|Flamingo1|MEGF3 cadherin EGF LAG seven-pass G-type receptor 2 protein-coding 285-198 chr2 64479215 64479400 + 2 NA Intergenic Intergenic -7046 NR_147011 105374774 NR_147011 ENSG00000223863 LINC01805 - long intergenic non-protein coding RNA 1805 ncRNA 323-327 chr3 65009842 65010136 + 2 NA intron (NR_038264, intron 5 of 5) intron (NR_038264, intron 5 of 5) -321989 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 922-21 chr2 204065416 204066155 + 2 NA Intergenic Intergenic 129037 NM_012092 29851 Hs.56247 NM_012092 ENSG00000163600 ICOS AILIM|CD278|CVID1 inducible T cell costimulator protein-coding 368-31 chr1 187169922 187170279 + 2 NA intron (NR_126347, intron 1 of 3) L1PB4|LINE|L1 77258 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 384-210 chr21 30677433 30677689 + 2 NA Intergenic Intergenic 34697 NM_001128077 337985 Hs.580878 NM_001128077 ENSG00000206104 KRTAP20-3 KAP19D|KAP20.3|KRTAP19P4 keratin associated protein 20-3 protein-coding 289-486 chr9 29030697 29030895 + 2 NA intron (NM_001354574, intron 1 of 5) L1MD3|LINE|L1 -141841 NR_030618 100126316 NR_030618 ENSG00000215939 MIR873 MIRN873|hsa-mir-873|mir-873 microRNA 873 ncRNA 382-359 chr6 95966575 95966906 + 2 NA Intergenic L1M5|LINE|L1 -49234 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 562-148 chr3 132234595 132235120 + 2 NA Intergenic L1MA9|LINE|L1 -82550 NM_001099 55 Hs.433060 NM_001099 ENSG00000014257 ACPP 5'-NT|ACP-3|ACP3 acid phosphatase, prostate protein-coding 384-111 chr14 66899972 66900302 + 2 NA intron (NM_001024218, intron 5 of 21) L1ME1|LINE|L1 -289303 NM_173526 161142 Hs.412818 NM_173526 ENSG00000172717 FAM71D C14orf54 family with sequence similarity 71 member D protein-coding 274-53 chr10 99952528 99952724 + 2 NA intron (NR_024130, intron 2 of 4) intron (NR_024130, intron 2 of 4) -21719 NM_001318326 23268 Hs.500771 NM_015221 ENSG00000107554 DNMBP ARHGEF36|CTRCT48|TUBA dynamin binding protein protein-coding 167-118 chrX 43455124 43455261 + 2 NA Intergenic MER34-int|LTR|ERV1 -199715 NM_001270458 4128 Hs.183109 NM_000240 ENSG00000189221 MAOA BRNRS|MAO-A monoamine oxidase A protein-coding 266-334 chr5 60476683 60476912 + 2 NA intron (NM_001364599, intron 1 of 16) L2a|LINE|L2 -10916 NR_024617 25859 Hs.146312 NM_001039499 ENSG00000152931 PART1 NCRNA00206 prostate androgen-regulated transcript 1 ncRNA 196-102 chr18 51981396 51981510 + 2 NA Intergenic Intergenic -358744 NM_005215 1630 Hs.162025 NM_005215 ENSG00000187323 DCC CRC18|CRCR1|HGPPS2|IGDCC1|MRMV1|NTN1R1 DCC netrin 1 receptor protein-coding 357-405 chr7 229745 229932 + 2 NA intron (NM_020223, intron 3 of 9) intron (NM_020223, intron 3 of 9) 37267 NM_020223 56975 Hs.134742 NM_020223 ENSG00000177706 FAM20C DMP-4|DMP4|G-CK|GEF-CK|RNS FAM20C golgi associated secretory pathway kinase protein-coding 444-29 chr10 98367958 98368385 + 2 NA Intergenic Intergenic 27136 NR_031619 100302133 NR_031619 ENSG00000284415 MIR1287 MIRN1287|hsa-mir-1287|mir-1287 microRNA 1287 ncRNA 341-318 chr22 48572448 48572627 + 2 NA intron (NM_001082967, intron 1 of 3) HAL1ME|LINE|L1 -3803 NM_015381 25817 Hs.436854 NM_015381 ENSG00000219438 TAFA5 FAM19A5|QLLK5208|TAFA-5|UNQ5208 TAFA chemokine like family member 5 protein-coding 349-447 chr6 62697641 62697837 + 2 NA Intergenic L1MEc|LINE|L1 -411512 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 356-319 chr3 44542502 44542804 + 2 NA Intergenic Intergenic -12540 NM_001288592 55888 Hs.529512 NM_018651 ENSG00000196345 ZKSCAN7 ZFP|ZNF167|ZNF448|ZNF64|ZSCAN39 zinc finger with KRAB and SCAN domains 7 protein-coding 271-118 chr13 97864314 97864481 + 2 NA Intergenic THE1A-int|LTR|ERVL-MaLR -89278 NM_002271 3843 Hs.712598 NM_002271 ENSG00000065150 IPO5 IMB3|KPNB3|Pse1|RANBP5|imp5 importin 5 protein-coding 491-42 chr11 115841597 115842052 + 2 NA Intergenic Intergenic -81624 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 276-196 chr18 2104031 2104267 + 2 NA Intergenic Intergenic 467356 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 226-147 chr2 12657952 12658074 + 2 NA Intergenic (GT)n|Simple_repeat|Simple_repeat -58859 NM_021643 28951 Hs.467751 NM_021643 ENSG00000071575 TRIB2 C5FW|GS3955|TRB2 tribbles pseudokinase 2 protein-coding 548-71 chr14 60336096 60336498 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 13101 NR_146481 101927729 NR_146481 ENSG00000258556 LINC02322 - long intergenic non-protein coding RNA 2322 ncRNA 817-20 chr17 55834960 55835742 + 2 NA Intergenic Intergenic 84246 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 259-28 chr1 224883147 224883334 + 2 NA Intergenic LTR54|LTR|ERV1 -46414 NM_144989 127602 Hs.133977 NM_001373 ENSG00000185842 DNAH14 C1orf67|Dnahc14|HL-18|HL18 dynein axonemal heavy chain 14 protein-coding 271-449 chr8 104164772 104165013 + 2 NA intron (NM_001348498, intron 20 of 24) L1PA12|LINE|L1 -58443 NM_001282882 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 317-394 chr5 115475461 115475680 + 2 NA Intergenic Intergenic 69205 NM_020177 56929 Hs.47367 NM_020177 ENSG00000145780 FEM1C EUROIMAGE686608|EUROIMAGE783647|FEM1A fem-1 homolog C protein-coding 274-182 chr19 27560947 27561195 + 2 NA Intergenic ALR/Alpha|Satellite|centr -232360 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 464-160 chr3 57118253 57118515 + 2 NA intron (NM_001318864, intron 3 of 13) intron (NM_001318864, intron 3 of 13) -39116 NM_001128615 50650 Hs.476402 NM_019555 ENSG00000163947 ARHGEF3 GEF3|STA3|XPLN Rho guanine nucleotide exchange factor 3 protein-coding 280-87 chr12 31888968 31889158 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -1860 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 307-268 chr2 232059765 232060030 + 2 NA intron (NR_046477, intron 5 of 18) L1PA16|LINE|L1 98184 NM_001257281 129563 Hs.732236 NM_152383 ENSG00000144535 DIS3L2 FAM6A|PRLMNS|hDIS3L2 DIS3 like 3'-5' exoribonuclease 2 protein-coding 295-242 chr2 210708460 210708666 + 2 NA Intergenic Intergenic 90992 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 348-73 chr11 3351589 3351772 + 2 NA Intergenic Intergenic 27466 NM_001242842 7748 Hs.386294 NM_007152 ENSG00000005801 ZNF195 HRF1|ZNFP104 zinc finger protein 195 protein-coding 202-282 chrX 98993405 98993565 + 2 NA Intergenic L1ME2|LINE|L1 1416788 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 562-136 chr3 24656124 24656501 + 2 NA Intergenic AluJb|SINE|Alu -160604 NM_001354708 7068 Hs.187861 NM_000461 ENSG00000151090 THRB C-ERBA-2|C-ERBA-BETA|ERBA2|GRTH|NR1A2|PRTH|THR1|THRB1|THRB2 thyroid hormone receptor beta protein-coding 260-273 chr3 84505539 84505694 + 2 NA Intergenic Intergenic 363959 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 183-118 chr5 63039383 63039510 + 2 NA Intergenic MIRb|SINE|MIR 460627 NM_181506 100130733 Hs.721348 NM_181506 ENSG00000186105 LRRC70 SLRN leucine rich repeat containing 70 protein-coding 821-34 chr3 64952890 64953344 + 2 NA intron (NR_038264, intron 4 of 5) L1ME3G|LINE|L1 -265117 NM_182920 56999 Hs.656071 NM_182920 ENSG00000163638 ADAMTS9 - ADAM metallopeptidase with thrombospondin type 1 motif 9 protein-coding 279-23 chr1 218132924 218133150 + 2 NA Intergenic L1MC3|LINE|L1 89532 NR_110794 101929631 Hs.407614 NR_110794 ENSG00000232100 LINC01653 - long intergenic non-protein coding RNA 1653 ncRNA 163-69 chr2 153881803 153881919 + 2 NA intron (NM_052917, intron 1 of 12) intron (NM_052917, intron 1 of 12) 9939 NM_052917 114805 Hs.470277 NM_052917 ENSG00000144278 GALNT13 GalNAc-T13 polypeptide N-acetylgalactosaminyltransferase 13 protein-coding 352-310 chr3 25232770 25233104 + 2 NA intron (NM_001290216, intron 4 of 10) MER47A|DNA|TcMar-Tigger -107865 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 278-295 chr3 168832108 168832286 + 2 NA Intergenic Intergenic -69748 NR_109989 100507661 Hs.65918 NR_109989 ENSG00000242268 LINC02082 - long intergenic non-protein coding RNA 2082 ncRNA 308-78 chr11 4970535 4970772 + 2 NA Intergenic L1M2b|LINE|L1 -14940 NM_001004748 401667 Hs.553805 NM_001004748 ENSG00000205496 OR51A2 - olfactory receptor family 51 subfamily A member 2 protein-coding 291-120 chr14 46541452 46541738 + 2 NA Intergenic Intergenic 70236 NR_102699 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 255-158 chr17 35041228 35041453 + 2 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) 22367 NM_001017368 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 305-355 chr3 95896872 95897121 + 2 NA Intergenic Intergenic -213803 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 658-48 chr15 84015319 84015792 + 2 NA intron (NM_207517, intron 24 of 29) MIRc|SINE|MIR -64632 NR_036652 648809 Hs.585157 NR_036652 EFL1P1 EFTUD1P1|FAM42B|HsT19321 elongation factor like GTPase 1 pseudogene 1 pseudo 306-315 chr3 83900871 83901056 + 2 NA Intergenic L1M2|LINE|L1 968612 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 266-384 chr7 4812974 4813132 + 2 NA intron (NM_018059, intron 9 of 14) intron (NM_018059, intron 9 of 14) 24397 NR_145804 109623455 NR_145804 SNORD165 - small nucleolar RNA, C/D box 165 snoRNA 384-198 chr2 237491439 237491754 + 2 NA intron (NM_024101, intron 1 of 15) intron (NM_024101, intron 1 of 15) 4345 NM_024101 79083 Hs.102406 NM_024101 ENSG00000115648 MLPH SLAC2-A melanophilin protein-coding 157-75 chr20 15344059 15344182 + 2 NA intron (NM_001351663, intron 6 of 17) intron (NM_001351663, intron 6 of 17) 147280 NM_001033087 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 399-294 chr7 145489238 145489571 + 2 NA Intergenic L1PA15|LINE|L1 -653351 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 365-427 chr9 102822513 102822815 + 2 NA Intergenic Intergenic -172669 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 370-109 chr12 17066109 17066399 + 2 NA Intergenic L2a|LINE|L2 77507 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 324-157 chr14 51074650 51074813 + 2 NA intron (NM_015163, intron 1 of 9) intron (NM_015163, intron 1 of 9) 20973 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 265-233 chr3 5236723 5236955 + 2 NA Intergenic MER110A|LTR|ERV1 13416 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 663-16 chr11 30223072 30223563 + 2 NA Intergenic Intergenic -7697 NM_001018080 2488 Hs.36975 NM_000510 ENSG00000131808 FSHB HH24 follicle stimulating hormone subunit beta protein-coding 302-408 chr7 33208701 33208997 + 2 NA intron (NM_198428, intron 5 of 22) L1MA3|LINE|L1 79285 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 274-194 chr2 31039379 31039596 + 2 NA intron (NM_024572, intron 1 of 14) intron (NM_024572, intron 1 of 14) 90153 NM_001253827 79623 Hs.468058 NM_024572 ENSG00000158089 GALNT14 GALNT15|GalNac-T10|GalNac-T14 polypeptide N-acetylgalactosaminyltransferase 14 protein-coding 544-144 chr3 31324310 31324702 + 2 NA Intergenic L2b|LINE|L2 -162719 NR_130459 100423038 NR_130459 ENSG00000265376 MIR466 hsa-mir-466 microRNA 466 ncRNA 314-317 chr2 197849635 197849916 + 2 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 45182 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 331-256 chr2 42425721 42425914 + 2 NA Intergenic Intergenic -56860 NM_001319037 9167 Hs.339639 NM_004718 ENSG00000115944 COX7A2L COX7AR|COX7RP|EB1|SIG81 cytochrome c oxidase subunit 7A2 like protein-coding 438-302 chrX 66753344 66753654 + 2 NA Intergenic L1MB8|LINE|L1 -114201 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 536-243 chr8 138295172 138295535 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) 201908 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 273-363 chr5 98633416 98633615 + 2 NA Intergenic L2c|LINE|L2 -135117 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 633-13 chr10 54001446 54002025 + 2 NA intron (NM_001354411, intron 21 of 34) L1MA3|LINE|L1 -484495 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 397-361 chr9 135002650 135002950 + 2 NA Intergenic Intergenic -72705 NM_006334 10439 Hs.522484 NM_006334 ENSG00000130558 OLFM1 AMY|NOE1|NOELIN1|OlfA olfactomedin 1 protein-coding 401-263 chr5 97354286 97354552 + 2 NA Intergenic L1PA13|LINE|L1 -150277 NR_105028 102546227 Hs.582516 NR_105028 ENSG00000250331 LINC01340 - long intergenic non-protein coding RNA 1340 ncRNA 395-56 chr11 54773124 54773399 + 2 NA Intergenic ALR/Alpha|Satellite|centr 66429 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 241-316 chr5 162659161 162659341 + 2 NA Intergenic Intergenic 591609 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 290-355 chr5 102147058 102147266 + 2 NA Intergenic Intergenic 149122 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 240-410 chr8 52077685 52077911 + 2 NA Intergenic MER77|LTR|ERVL -116564 NR_134310 101929341 Hs.147170 NR_134310 ENSG00000253551 LOC101929341 - uncharacterized LOC101929341 ncRNA 411-72 chr12 83613560 83613899 + 2 NA Intergenic Intergenic 926574 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 159-28 chr14 30719135 30719244 + 2 NA intron (NM_016106, intron 20 of 24) MIR|SINE|MIR 96870 NM_016106 23256 Hs.369168 NM_016106 ENSG00000092108 SCFD1 C14orf163|RA410|SLY1|SLY1P|STXBP1L2 sec1 family domain containing 1 protein-coding 266-111 chr14 46932431 46932677 + 2 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -280773 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 554-154 chr4 15876773 15877213 + 2 NA Intergenic L1M2|LINE|L1 61747 NM_005130 9982 Hs.1690 NM_005130 ENSG00000137440 FGFBP1 FGF-BP|FGF-BP1|FGFBP|FGFBP-1|HBP17 fibroblast growth factor binding protein 1 protein-coding 516-89 chr16 5856118 5856457 + 2 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -162737 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 351-253 chr2 234698057 234698274 + 2 NA intron (NR_132376, intron 2 of 2) THE1B|LTR|ERVL-MaLR 15497 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 242-207 chr2 238480809 238480992 + 2 NA Intergenic L1MEg|LINE|L1 53973 NM_001330196 51665 Hs.516788 NM_016114 ENSG00000065802 ASB1 ASB-1 ankyrin repeat and SOCS box containing 1 protein-coding 595-175 chrX 27954515 27954917 + 2 NA Intergenic Intergenic 26733 NM_001017930 139425 Hs.447365 NM_001017930 ENSG00000226372 DCAF8L1 WDR42B DDB1 and CUL4 associated factor 8 like 1 protein-coding 333-594 chr8 136904279 136904530 + 2 NA Intergenic MER66B|LTR|ERV1 373606 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 561-74 chr15 98045163 98045544 + 2 NA Intergenic MIRb|SINE|MIR 42315 NR_146563 105371008 NR_146563 LINC02251 - long intergenic non-protein coding RNA 2251 ncRNA 357-32 chr10 19367418 19367680 + 2 NA intron (NM_001142308, intron 26 of 39) L1MA5A|LINE|L1 318748 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 235-296 chr5 133529411 133529585 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 83043 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 176-104 chr5 38835573 38835705 + 2 NA intron (NR_109951, intron 1 of 3) intron (NR_109951, intron 1 of 3) 10190 NR_109951 101929768 Hs.546623 NR_109951 OSMR-AS1 CTD-2127H9.1 OSMR antisense RNA 1 (head to head) ncRNA 260-30 chr1 205883156 205883368 + 2 NA intron (NR_046097, intron 1 of 2) L1MA5A|LINE|L1 -6758 NR_046098 284581 NR_046097 LOC284581 - uncharacterized LOC284581 ncRNA 355-92 chr11 77008414 77008715 + 2 NA intron (NM_001300953, intron 6 of 9) L2c|LINE|L2 -25834 NM_138706 192134 Hs.352622 NM_138706 ENSG00000198488 B3GNT6 B3Gn-T6|BGnT-6|beta-1,3-Gn-T6|beta3Gn-T6 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 protein-coding 377-167 chr18 12332970 12333301 + 2 NA intron (NM_006796, intron 16 of 16) (AT)n|Simple_repeat|Simple_repeat 24894 NM_001303528 84617 Hs.193491 NM_032525 ENSG00000176014 TUBB6 FPVEPD|HsT1601|TUBB-5 tubulin beta 6 class V protein-coding 228-255 chr4 111034068 111034208 + 2 NA Intergenic Intergenic -173491 NR_030643 100126354 NR_030643 ENSG00000215961 MIR297 MIRN297|hsa-mir-297 microRNA 297 ncRNA 202-91 chr17 726898 727070 + 2 NA Intergenic Intergenic -5562 NM_001318007 79850 Hs.154396 NM_024792 ENSG00000167695 TLCD3A CT120|FAM57A TLC domain containing 3A protein-coding 356-171 chr15 95731447 95731666 + 2 NA Intergenic Charlie21a|DNA|hAT-Charlie 298463 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 372-304 chr22 42012288 42012544 + 2 NA intron (NM_152613, intron 1 of 5) L1M4|LINE|L1 13628 NM_152613 164684 Hs.655541 NM_152613 ENSG00000183066 WBP2NL GRAMD7|PAWP WBP2 N-terminal like protein-coding 442-193 chr3 113187093 113187402 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -19516 NR_110823 101929717 Hs.638426 NR_110823 ENSG00000243795 LINC02044 - long intergenic non-protein coding RNA 2044 ncRNA 272-82 chr11 133091485 133091705 + 2 NA intron (NM_001012393, intron 1 of 7) MLT1A1-int|LTR|ERVL-MaLR -147827 NM_001319105 4978 Hs.4817 NM_002545 ENSG00000183715 OPCML IGLON1|OBCAM|OPCM opioid binding protein/cell adhesion molecule like protein-coding 577-85 chr19 56442109 56442496 + 2 NA exon (NM_001321356, exon 7 of 7) exon (NM_001321356, exon 7 of 7) 35043 NM_001321356 63934 Hs.676605 NM_022103 ENSG00000198046 ZNF667 MIPU1 zinc finger protein 667 protein-coding 520-40 chr10 107025245 107025603 + 2 NA intron (NM_001206569, intron 1 of 25) intron (NM_001206569, intron 1 of 25) 139282 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 279-102 chr14 44876774 44876959 + 2 NA Intergenic Intergenic -20409 NM_001017923 122525 Hs.82098 NM_001017923 ENSG00000179476 C14orf28 DRIP-1|DRIP1|c14_5270 chromosome 14 open reading frame 28 protein-coding 305-472 chr6 62650879 62651072 + 2 NA Intergenic MER61-int|LTR|ERV1 -364748 NR_146872 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 216-223 chr3 80977535 80977686 + 2 NA Intergenic Intergenic -16258 NR_132411 728290 Hs.563132 NR_132411 ENSG00000243694 LINC02027 - long intergenic non-protein coding RNA 2027 ncRNA 306-214 chr19 27509397 27509672 + 2 NA Intergenic ALR/Alpha|Satellite|centr -283897 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 315-95 chr12 1355305 1355559 + 2 NA intron (NR_027948, intron 15 of 19) MER103C|DNA|hAT-Charlie -145059 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 215-138 chr2 19147656 19147801 + 2 NA Intergenic L2|LINE|L2 -120757 NR_135287 400945 Hs.502854 NR_135287 ENSG00000236204 LINC01376 - long intergenic non-protein coding RNA 1376 ncRNA 367-238 chr2 211384221 211384562 + 2 NA intron (NM_001042599, intron 26 of 26) intron (NM_001042599, intron 26 of 26) 766820 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 280-418 chr8 110447500 110447698 + 2 NA Intergenic L2|LINE|L2 -471828 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 334-153 chr14 68390679 68390985 + 2 NA intron (NM_133509, intron 8 of 10) intron (NM_133509, intron 8 of 10) 237955 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 515-266 chr8 106238713 106239215 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -31214 NM_001198533 55074 Hs.127286 NM_018002 ENSG00000164830 OXR1 Nbla00307|TLDC3 oxidation resistance 1 protein-coding 254-360 chr6 159742308 159742483 + 2 NA intron (NM_152857, intron 4 of 5) intron (NM_152857, intron 4 of 5) 14889 NM_001270531 9589 Hs.446091 NM_004906 ENSG00000146457 WTAP Mum2 WT1 associated protein protein-coding 243-105 chr13 22020502 22020726 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -142454 NR_047040 100874182 Hs.148951 NR_047040 ENSG00000226722 LINC00424 - long intergenic non-protein coding RNA 424 ncRNA 494-246 chr6 53212051 53212392 + 2 NA Intergenic L1MB2|LINE|L1 -63380 NM_003643 8521 Hs.23589 NM_003643 ENSG00000137270 GCM1 GCMA|hGCMa glial cells missing transcription factor 1 protein-coding 306-549 chr9 88801178 88801409 + 2 NA Intergenic L1ME3Cz|LINE|L1 -55388 NR_036252 100423015 NR_036252 ENSG00000265873 MIR4289 - microRNA 4289 ncRNA 276-430 chr7 67520364 67520529 + 2 NA Intergenic LTR39|LTR|ERV1 184470 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 332-560 chr9 16392357 16392680 + 2 NA Intergenic Intergenic -116205 NM_001364979 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 483-118 chr2 111214730 111215104 + 2 NA intron (NR_015395, intron 5 of 6) L1MCa|LINE|L1 94003 NM_001204107 10018 Hs.469658 NM_006538 ENSG00000153094 BCL2L11 BAM|BIM|BOD BCL2 like 11 protein-coding 233-319 chr5 169365341 169365529 + 2 NA Intergenic Intergenic -64296 NM_001271946 6586 Hs.552087 NM_003062 ENSG00000184347 SLIT3 MEGF5|SLIL2|SLIT1|Slit-3|slit2 slit guidance ligand 3 protein-coding 191-72 chr16 79531352 79531491 + 2 NA Intergenic MER1A|DNA|hAT-Charlie 69316 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 380-128 chr14 97317404 97317759 + 2 NA Intergenic Intergenic -141235 NR_110166 101929241 Hs.650839 NR_110165 ENSG00000246084 LINC02325 - long intergenic non-protein coding RNA 2325 ncRNA 266-236 chr3 20674686 20674864 + 2 NA Intergenic L1ME4b|LINE|L1 332307 NR_110814 101927829 Hs.639381 NR_110814 ENSG00000231304 LOC101927829 - uncharacterized LOC101927829 ncRNA 272-256 chr3 7751107 7751252 + 2 NA Intergenic Intergenic -215895 NR_046606 100873937 Hs.570608 NR_046606 ENSG00000236202 GRM7-AS1 - GRM7 antisense RNA 1 ncRNA 227-215 chr21 31586250 31586420 + 2 NA Intergenic L3|LINE|CR1 27102 NM_001321023 150051 Hs.708976 NM_001321023 LOC150051 - uncharacterized LOC150051 protein-coding 480-157 chr2 128629930 128630313 + 2 NA Intergenic MLT2B4|LTR|ERVL -234479 NR_110278 101927881 Hs.570247 NR_110278 LOC101927881 - uncharacterized LOC101927881 ncRNA 546-155 chr3 162358106 162358398 + 2 NA Intergenic L1P4|LINE|L1 861444 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 472-44 chr11 13426176 13426518 + 2 NA intron (NM_001297741, intron 1 of 7) L1ME1|LINE|L1 13932 NM_001297742 84280 Hs.332382 NM_032320 ENSG00000148925 BTBD10 GMRP-1|GMRP1 BTB domain containing 10 protein-coding 474-205 chr4 44729996 44730398 + 2 NA Intergenic L1M5|LINE|L1 -3563 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 396-259 chr4 124918063 124918371 + 2 NA Intergenic Intergenic -205485 NM_001167882 57182 Hs.480694 NM_020337 ENSG00000151458 ANKRD50 - ankyrin repeat domain 50 protein-coding 353-41 chr1 240075099 240075334 + 2 NA Intergenic MER41B|LTR|ERV1 -16667 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 423-87 chr15 82844683 82845032 + 2 NA Intergenic Intergenic 35229 NM_001080435 123720 Hs.377360 NM_001080435 ENSG00000156232 WHAMM WHAMM1|WHDC1 WASP homolog associated with actin, golgi membranes and microtubules protein-coding 391-156 chr2 16004664 16004944 + 2 NA Intergenic L2c|LINE|L2 -45623 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 369-244 chr20 56816458 56816742 + 2 NA Intergenic MER20|DNA|hAT-Charlie 187294 NM_003222 7022 Hs.473152 NM_003222 ENSG00000087510 TFAP2C AP2-GAMMA|ERF1|TFAP2G|hAP-2g transcription factor AP-2 gamma protein-coding 619-125 chr8 15031426 15031896 + 2 NA intron (NM_139167, intron 1 of 7) MIR|SINE|MIR -178151 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 316-114 chr11 108436812 108437025 + 2 NA intron (NR_147053, intron 3 of 12) L1MEg|LINE|L1 30611 NM_001351110 160140 Hs.653180 NM_152587 ENSG00000166323 C11orf65 - chromosome 11 open reading frame 65 protein-coding 266-317 chr5 25320164 25320364 + 2 NA Intergenic Intergenic 129311 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 194-120 chr3 67756005 67756184 + 2 NA intron (NR_109992, intron 3 of 6) L1MC3|LINE|L1 101397 NR_109992 101927111 Hs.518057 NR_109992 ENSG00000241316 SUCLG2-AS1 - SUCLG2 antisense RNA 1 (head to head) ncRNA 371-319 chr5 99374616 99374811 + 2 NA Intergenic MER6A|DNA|TcMar-Tigger -159277 NR_110562 102724855 Hs.519477 NR_110562 LINC02113 CTD-2151A2.1 long intergenic non-protein coding RNA 2113 ncRNA 528-125 chr2 28997734 28998169 + 2 NA intron (NM_001321538, intron 2 of 18) intron (NM_001321538, intron 2 of 18) 16653 NM_199280 165186 Hs.525977 NM_199280 ENSG00000189350 TOGARAM2 FAM179A TOG array regulator of axonemal microtubules 2 protein-coding 233-293 chr5 35620863 35621078 + 2 NA intron (NM_144722, intron 1 of 9) intron (NM_144722, intron 1 of 9) 3107 NM_024867 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 629-106 chr5 167364612 167364982 + 2 NA intron (NM_001122679, intron 2 of 29) L1MEf|LINE|L1 -196396 NR_134280 101927908 NR_134280 ENSG00000253469 LOC101927908 - uncharacterized LOC101927908 ncRNA 299-220 chr2 123417520 123417672 + 2 NA Intergenic L1PA13|LINE|L1 -344115 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 265-110 chr14 69402154 69402362 + 2 NA intron (NM_001330185, intron 1 of 5) MER30|DNA|hAT-Charlie 3566 NM_001252150 55334 Hs.432690 NM_018375 ENSG00000029364 SLC39A9 ZIP-9|ZIP9 solute carrier family 39 member 9 protein-coding 519-125 chr2 213657296 213657661 + 2 NA intron (NR_047660, intron 9 of 14) intron (NR_047660, intron 9 of 14) -100589 NR_039640 100616375 NR_039640 ENSG00000265734 MIR4438 - microRNA 4438 ncRNA 490-91 chr14 78092288 78092732 + 2 NA Intergenic Intergenic -77863 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 548-238 chr8 121449257 121449768 + 2 NA Intergenic Intergenic -189834 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 192-210 chr8 112400172 112400349 + 2 NA intron (NM_001363185, intron 31 of 66) MLT1A0|LTR|ERVL-MaLR -243233 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 383-277 chr4 45234386 45234751 + 2 NA Intergenic Intergenic -507934 NM_001270880 132789 Hs.21398 NM_138335 ENSG00000163281 GNPDA2 GNP2|SB52 glucosamine-6-phosphate deaminase 2 protein-coding 195-180 chr4 177712644 177712816 + 2 NA Intergenic Intergenic -16027 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 199-113 chr2 59457972 59458121 + 2 NA Intergenic Intergenic 240338 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 283-125 chr13 104456983 104457231 + 2 NA Intergenic Intergenic -1008760 NM_001161814 267012 Hs.381382 NM_172370 ENSG00000182346 DAOA LG72|SG72 D-amino acid oxidase activator protein-coding 249-16 chr1 103155999 103156186 + 2 NA Intergenic Intergenic -47570 NM_001854 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 330-33 chr1 179149282 179149486 + 2 NA intron (NM_007314, intron 1 of 11) Tigger1|DNA|TcMar-Tigger -6308 NM_001168239 27 Hs.159472 NM_005158 ENSG00000143322 ABL2 ABLL|ARG ABL proto-oncogene 2, non-receptor tyrosine kinase protein-coding 410-249 chr5 124113717 124113961 + 2 NA intron (NR_125774, intron 4 of 5) intron (NR_125774, intron 4 of 5) 324681 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 356-393 chr5 44165335 44165587 + 2 NA Intergenic L1PA15|LINE|L1 -223271 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 292-79 chr11 79863052 79863268 + 2 NA Intergenic L1PREC2|LINE|L1 -422130 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 365-24 chr1 168404726 168405026 + 2 NA intron (NR_037851, intron 3 of 3) intron (NR_037851, intron 3 of 3) 17780 NR_037851 100505918 Hs.568494 NR_037851 LOC100505918 - uncharacterized LOC100505918 ncRNA 296-25 chr1 236781071 236781233 + 2 NA Intergenic L1MB4|LINE|L1 -14129 NM_000254 4548 Hs.498187 NM_000254 ENSG00000116984 MTR HMAG|MS|cblG 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 442-297 chr8 124850135 124850432 + 2 NA Intergenic L1MB3|LINE|L1 -28225 NR_039809 100616255 NR_039809 ENSG00000263735 MIR4662B - microRNA 4662b ncRNA 287-118 chr12 96889453 96889709 + 2 NA Intergenic L1ME3A|LINE|L1 -17676 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 227-123 chr16 54130550 54130745 + 2 NA Intergenic L1M5|LINE|L1 91254 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 414-248 chr4 129986222 129986568 + 2 NA Intergenic Intergenic 214776 NR_151713 107986313 Hs.112740 NR_151713 ENSG00000249618 LINC02465 - long intergenic non-protein coding RNA 2465 ncRNA 308-152 chr14 85873778 85873990 + 2 NA Intergenic Intergenic -60794 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 356-127 chr13 42794722 42795040 + 2 NA Intergenic Intergenic 13297 NM_001318932 144809 Hs.16970 NM_182508 ENSG00000179813 FAM216B C13orf30 family with sequence similarity 216 member B protein-coding 668-111 chr9 28293532 28294133 + 2 NA intron (NM_152570, intron 5 of 6) intron (NM_152570, intron 5 of 6) 425473 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 330-173 chr15 78576701 78576965 + 2 NA intron (NM_001307945, intron 1 of 5) intron (NM_001307945, intron 1 of 5) 11313 NM_001307945 1138 Hs.1614 NM_000745 ENSG00000169684 CHRNA5 LNCR2 cholinergic receptor nicotinic alpha 5 subunit protein-coding 271-117 chr13 94546226 94546392 + 2 NA intron (NM_001322186, intron 1 of 9) MER67B|LTR|ERV1 3097 NM_001322186 1638 Hs.301865 NM_001922 ENSG00000080166 DCT TRP-2|TYRP2 dopachrome tautomerase protein-coding 412-205 chr3 19303216 19303563 + 2 NA intron (NM_144633, intron 3 of 15) L1MEg|LINE|L1 11542 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 354-414 chr6 159541808 159542082 + 2 NA Intergenic Intergenic 151296 NM_001024466 6648 Hs.487046 NM_000636 ENSG00000112096 SOD2 IPO-B|IPOB|MNSOD|MVCD6|Mn-SOD superoxide dismutase 2 protein-coding 260-319 chr4 93605174 93605417 + 2 NA intron (NM_001286838, intron 12 of 14) MER3|DNA|hAT-Charlie -223458 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 328-551 chr7 145565868 145566161 + 2 NA Intergenic Intergenic -729961 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 443-225 chr4 89934322 89934645 + 2 NA intron (NM_001371403, intron 6 of 8) intron (NM_001371403, intron 6 of 8) 39629 NM_007351 22915 Hs.268107 NM_007351 ENSG00000138722 MMRN1 ECM|EMILIN4|GPIa*|MMRN multimerin 1 protein-coding 410-176 chr22 27695118 27695442 + 2 NA Intergenic Intergenic 106476 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 200-247 chr6 146040721 146040869 + 2 NA intron (NM_001278065, intron 2 of 9) L1M1|LINE|L1 11597 NM_001278066 2911 Hs.32945 NM_000838 ENSG00000152822 GRM1 GPRC1A|MGLU1|MGLUR1|PPP1R85|SCA44|SCAR13 glutamate metabotropic receptor 1 protein-coding 602-71 chr2 210205419 210205921 + 2 NA exon (NM_001608, exon 6 of 11) exon (NM_001608, exon 6 of 11) 19777 NM_001608 33 Hs.471277 NM_001608 ENSG00000115361 ACADL ACAD4|LCAD acyl-CoA dehydrogenase long chain protein-coding 307-460 chr7 89059242 89059408 + 2 NA intron (NM_181646, intron 1 of 3) MSTB|LTR|ERVL-MaLR -263588 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 176-83 chr3 43427440 43427536 + 2 NA intron (NM_001204831, intron 11 of 12) intron (NM_001204831, intron 11 of 12) -75526 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 231-248 chr4 35683376 35683570 + 2 NA Intergenic Intergenic 560466 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 194-128 chr3 118445872 118446035 + 2 NA Intergenic Intergenic -195815 NR_135573 101926968 Hs.518185 NR_135573 LOC101926968 - uncharacterized LOC101926968 ncRNA 674-47 chr2 113970315 113970775 + 2 NA intron (NR_148507, intron 1 of 2) MLT1L|LTR|ERVL-MaLR 1223 NR_148507 440900 Hs.662205 NR_034128 ENSG00000234199 LINC01191 VIN|lnc-ACTR3 long intergenic non-protein coding RNA 1191 ncRNA 262-247 chr20 24487285 24487511 + 2 NA intron (NR_147606, intron 1 of 4) intron (NR_147606, intron 1 of 4) 17437 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 320-169 chr15 54499683 54499930 + 2 NA intron (NM_001329919, intron 19 of 31) intron (NM_001329919, intron 19 of 31) 487158 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 254-7 chr1 63431632 63431842 + 2 NA intron (NM_013339, intron 14 of 14) L1MB7|LINE|L1 64110 NM_013339 29929 Hs.258501 NM_013339 ENSG00000088035 ALG6 CDG1C ALG6 alpha-1,3-glucosyltransferase protein-coding 379-178 chr2 207392045 207392349 + 2 NA Intergenic Intergenic -122773 NR_031633 100302130 NR_031633 ENSG00000221628 MIR1302-4 MIRN1302-4|hsa-mir-1302-4 microRNA 1302-4 ncRNA 331-261 chr2 47947611 47947824 + 2 NA Intergenic Intergenic -41924 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 137-69 chr4 165122293 165122377 + 2 NA Intergenic AluJr|SINE|Alu -9475 NM_001100389 201931 Hs.704511 NM_152681 ENSG00000170088 TMEM192 - transmembrane protein 192 protein-coding 208-41 chr11 87615267 87615396 + 2 NA Intergenic Intergenic 104080 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 171-95 chr4 92216566 92216696 + 2 NA Intergenic Intergenic 60671 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 123-8 chr10 130081646 130081759 + 2 NA intron (NM_001355042, intron 1 of 3) L1MC4a|LINE|L1 -24307 NR_044994 119437 Hs.620802 NR_044994 ENSG00000233122 CTAGE7P CTAGE7|CTAGEP|bA500G10.2|rcCTAGE5 CTAGE family member 7, pseudogene pseudo 254-340 chr6 17128214 17128395 + 2 NA intron (NM_001190766, intron 3 of 4) intron (NM_001190766, intron 3 of 4) 26046 NM_001190766 401236 Hs.677399 NM_001190766 ENSG00000230873 STMND1 - stathmin domain containing 1 protein-coding 480-22 chr10 21028841 21029185 + 2 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -131411 NM_006393 10529 Hs.5025 NM_006393 ENSG00000078114 NEBL LASP2|LNEBL nebulette protein-coding 256-162 chr17 51281794 51282027 + 2 NA intron (NM_016001, intron 9 of 13) intron (NM_016001, intron 9 of 13) 21364 NM_016001 51096 Hs.709327 NM_016001 ENSG00000011260 UTP18 CGI-48|WDR50 UTP18 small subunit processome component protein-coding 361-109 chr12 66963295 66963542 + 2 NA Intergenic MIR|SINE|MIR 132866 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 389-209 chr20 54556369 54556590 + 2 NA intron (NM_018431, intron 2 of 7) intron (NM_018431, intron 2 of 7) 80886 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 362-18 chr1 91678197 91678476 + 2 NA Intergenic Intergenic 177228 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 331-479 chr6 163364510 163364729 + 2 NA Intergenic Intergenic -17586 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 375-228 chr2 214116015 214116215 + 2 NA intron (NR_047660, intron 13 of 14) L1M3a|LINE|L1 -294939 NM_001345929 402117 Hs.534834 NM_001080500 ENSG00000174453 VWC2L - von Willebrand factor C domain containing 2 like protein-coding 471-123 chr19 52163620 52163950 + 2 NA intron (NM_001102657, intron 3 of 4) intron (NM_001102657, intron 3 of 4) 7836 NM_001102657 162962 Hs.631584 NM_001102657 ENSG00000196267 ZNF836 - zinc finger protein 836 protein-coding 655-113 chr7 124413086 124413548 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -61221 NR_110180 101928211 Hs.131334 NR_110180 LOC101928211 - uncharacterized LOC101928211 ncRNA 322-28 chr1 159518570 159518886 + 2 NA Intergenic L1MEf|LINE|L1 17279 NM_001004469 127385 Hs.553587 NM_001004469 ENSG00000184155 OR10J5 OR1-28 olfactory receptor family 10 subfamily J member 5 protein-coding 388-17 chr1 165302346 165302611 + 2 NA intron (NM_177398, intron 3 of 8) AluSx|SINE|Alu 53763 NM_001174069 4009 Hs.667312 NM_177398 ENSG00000162761 LMX1A LMX1|LMX1.1 LIM homeobox transcription factor 1 alpha protein-coding 220-263 chr4 97521129 97521291 + 2 NA Intergenic Intergenic 154284 NR_102713 101410545 Hs.628520 NR_102713 ENSG00000251620 STPG2-AS1 - STPG2 antisense RNA 1 ncRNA 236-51 chr10 90753887 90754097 + 2 NA intron (NM_019860, intron 1 of 2) intron (NM_019860, intron 1 of 2) 104047 NM_019860 3363 Hs.73739 NM_000872 ENSG00000148680 HTR7 5-HT7 5-hydroxytryptamine receptor 7 protein-coding 359-161 chr15 87856355 87856632 + 2 NA Intergenic Intergenic 89775 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 306-542 chr9 15966877 15967064 + 2 NA intron (NM_001355547, intron 24 of 24) (TA)n|Simple_repeat|Simple_repeat 286137 NM_001271829 100129385 Hs.586441 NM_001271829 ENSG00000205549 C9orf92 Em:AL513424.1 chromosome 9 open reading frame 92 protein-coding 279-171 chr2 45719827 45719989 + 2 NA intron (NM_005400, intron 1 of 14) AluJr4|SINE|Alu 68233 NM_005400 5581 Hs.580351 NM_005400 ENSG00000171132 PRKCE PKCE|nPKC-epsilon protein kinase C epsilon protein-coding 312-552 chr9 103599844 103600074 + 2 NA Intergenic Intergenic -274926 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 246-146 chr16 86005797 86005959 + 2 NA Intergenic L1ME1|LINE|L1 87531 NR_106832 102466732 NR_106832 ENSG00000274134 MIR6774 hsa-mir-6774 microRNA 6774 ncRNA 543-145 chr20 2054582 2054928 + 2 NA Intergenic Intergenic -47072 NM_080836 140901 Hs.100057 NM_080836 ENSG00000125834 STK35 CLIK1|STK35L1 serine/threonine kinase 35 protein-coding 342-26 chr1 111678915 111679098 + 2 NA intron (NM_001370217, intron 1 of 7) L1M4|LINE|L1 14212 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 828-47 chr7 50836752 50837351 + 2 NA Intergenic L2a|LINE|L2 -43598 NM_001371008 613-138 chr8 102179475 102180010 + 2 NA Intergenic Intergenic 54310 NR_049859 100847001 NR_049859 ENSG00000266756 MIR5680 - microRNA 5680 ncRNA 468-143 chr2 72818810 72819177 + 2 NA intron (NR_135774, intron 1 of 19) L2a|LINE|L2 7040 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 315-2 chr1 5646032 5646208 + 2 NA Intergenic Intergenic 216621 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 348-157 chr15 58072279 58072617 + 2 NA non-coding (NR_147215, exon 3 of 3) non-coding (NR_147215, exon 3 of 3) -6525 NM_001206897 8854 Hs.643455 NM_003888 ENSG00000128918 ALDH1A2 RALDH(II)|RALDH2|RALDH2-T aldehyde dehydrogenase 1 family member A2 protein-coding 350-286 chr21 26752207 26752475 + 2 NA Intergenic HAL1|LINE|L1 93068 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 358-216 chr2 79031531 79031833 + 2 NA Intergenic L1MCb|LINE|L1 5980 NM_001008387 130120 Hs.447084 NM_198448 ENSG00000143954 REG3G LPPM429|PAP IB|PAP-1B|PAP1B|PAPIB|REG III|REG-III|UNQ429 regenerating family member 3 gamma protein-coding 133-62 chr5 8033806 8033928 + 2 NA Intergenic Intergenic 164719 NR_157172 4552 Hs.481551 NM_002454 ENSG00000124275 MTRR MSR|cblE 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 615-151 chrX 52472324 52472884 + 2 NA Intergenic Intergenic -23064 NM_001097604 653067 Hs.112208 NM_020411 ENSG00000204382 XAGE1B CT12.1|CT12.1C|CT12.1D|CT12.1E|CT12.1b|CTP9|GAGED2|XAGE-1|XAGE1|XAGE1C|XAGE1D|XAGE1E X antigen family member 1B protein-coding 392-45 chr11 113222816 113223151 + 2 NA intron (NM_181351, intron 9 of 18) intron (NM_181351, intron 9 of 18) 50918 NR_034101 100288346 Hs.661826 NR_034101 ENSG00000227487 NCAM1-AS1 - NCAM1 antisense RNA1 ncRNA 349-341 chr3 124252724 124252997 + 2 NA intron (NM_001024660, intron 3 of 59) intron (NM_001024660, intron 3 of 59) 119931 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 302-386 chr6 70873873 70874094 + 2 NA intron (NM_080742, intron 2 of 3) L1M4|LINE|L1 83077 NM_080742 135152 Hs.713609 NM_080742 ENSG00000112309 B3GAT2 GLCATS beta-1,3-glucuronyltransferase 2 protein-coding 329-50 chr10 39035724 39036009 + 2 NA Intergenic ALR/Alpha|Satellite|centr 339270 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 202-221 chr6 9523572 9523718 + 2 NA Intergenic L1MEi|LINE|L1 871436 NR_004855 728655 Hs.214343 NR_004855 HULC HCCAT1|LINC00078|NCRNA00078 hepatocellular carcinoma up-regulated long non-coding RNA ncRNA 463-184 chr3 51174348 51174661 + 2 NA intron (NM_004947, intron 12 of 52) L1MA9|LINE|L1 -210787 NM_006010 7873 Hs.436446 NM_006010 ENSG00000145050 MANF ARMET|ARP mesencephalic astrocyte derived neurotrophic factor protein-coding 210-127 chr2 56801889 56802051 + 2 NA Intergenic Intergenic -616200 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 259-324 chr5 123484244 123484474 + 2 NA Intergenic Intergenic -27740 NM_001031812 1456 Hs.129206 NM_004384 ENSG00000151292 CSNK1G3 CKI-gamma 3|CSNK1G3L casein kinase 1 gamma 3 protein-coding 399-289 chr7 86088514 86088794 + 2 NA Intergenic HERVL-int|LTR|ERVL -555255 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 197-133 chr3 66907764 66907916 + 2 NA Intergenic Intergenic -90467 NM_032505 84541 Hs.116665 NM_032505 ENSG00000163376 KBTBD8 TA-KRP|TAKRP kelch repeat and BTB domain containing 8 protein-coding 372-8 chr1 38706344 38706574 + 2 NA Intergenic L1MEc|LINE|L1 153313 NM_001271851 64121 Hs.532461 NM_022157 ENSG00000116954 RRAGC GTR2|RAGC|TIB929 Ras related GTP binding C protein-coding 460-195 chr3 70428789 70429102 + 2 NA Intergenic L2c|LINE|L2 -116307 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 199-24 chr10 67020023 67020170 + 2 NA intron (NR_111909, intron 2 of 2) intron (NR_111909, intron 2 of 2) 7830 NR_111909 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 194-190 chr6 137289738 137289872 + 2 NA Intergenic Intergenic -70375 NM_000416 3459 Hs.520414 NM_000416 ENSG00000027697 IFNGR1 CD119|IFNGR|IMD27A|IMD27B interferon gamma receptor 1 protein-coding 361-392 chr6 85268053 85268337 + 2 NA Intergenic Intergenic 121991 NR_134634 101928820 Hs.587370 NR_134633 ENSG00000234155 LINC02535 - long intergenic non-protein coding RNA 2535 ncRNA 251-183 chr2 124159593 124159780 + 2 NA intron (NM_130773, intron 1 of 23) intron (NM_130773, intron 1 of 23) 134399 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 382-254 chr22 46260170 46260492 + 2 NA exon (NM_006071, exon 1 of 1) exon (NM_006071, exon 1 of 1) 3012 NM_006071 10343 Hs.241383 NM_006071 ENSG00000130943 PKDREJ - polycystin family receptor for egg jelly protein-coding 348-50 chr10 47231456 47231789 + 2 NA Intergenic Intergenic -68575 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 481-41 chr10 77433172 77433525 + 2 NA intron (NM_001271519, intron 1 of 28) AluSz6|SINE|Alu 82476 NR_126365 101929286 Hs.568867 NR_126365 KCNMA1-AS3 - KCNMA1 antisense RNA 3 ncRNA 316-122 chr12 20744846 20745114 + 2 NA intron (NM_017435, intron 13 of 14) L1MC5|LINE|L1 49515 NM_017435 53919 Hs.47261 NM_017435 ENSG00000139155 SLCO1C1 OATP-F|OATP1|OATP14|OATP1C1|OATPF|OATPRP5|SLC21A14 solute carrier organic anion transporter family member 1C1 protein-coding 283-182 chr17 58934820 58934996 + 2 NA intron (NM_014906, intron 1 of 6) AluSx1|SINE|Alu 171972 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 367-317 chr4 26476823 26477128 + 2 NA Intergenic MER41E|LTR|ERV1 13509 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 264-102 chr13 22305778 22305982 + 2 NA Intergenic L1M4|LINE|L1 95595 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 137-81 chr6 140853268 140853382 + 2 NA Intergenic Intergenic 169511 NR_039675 100616180 NR_039675 ENSG00000264390 MIR4465 - microRNA 4465 ncRNA 592-98 chr20 57968373 57968806 + 2 NA Intergenic Intergenic -35315 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 455-34 chr10 90211360 90211685 + 2 NA Intergenic MER1A|DNA|hAT-Charlie -254149 NR_110655 101926924 Hs.500498 NR_110655 ENSG00000226159 LINC01375 - long intergenic non-protein coding RNA 1375 ncRNA 448-291 chr8 140125620 140126005 + 2 NA intron (NM_001160372, intron 17 of 22) intron (NM_001160372, intron 17 of 22) -25277 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 315-24 chr1 147518482 147518710 + 2 NA promoter-TSS (NR_038423) promoter-TSS (NR_038423) -721 NR_038423 100289211 Hs.323484 NR_038423 ENSG00000278811 LINC00624 - long intergenic non-protein coding RNA 624 ncRNA 327-133 chr12 128416317 128416542 + 2 NA intron (NM_001136103, intron 2 of 8) Tigger18a|DNA|TcMar-Tigger 122337 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 303-203 chr2 51270682 51270940 + 2 NA intron (NR_135237, intron 2 of 10) MLT1G3-int|LTR|ERVL-MaLR 238210 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 629-93 chr4 146733430 146733889 + 2 NA intron (NR_133922, intron 12 of 13) intron (NR_133922, intron 12 of 13) 94766 NM_004575 5458 Hs.266 NM_004575 ENSG00000151615 POU4F2 BRN3.2|BRN3B|Brn-3b POU class 4 homeobox 2 protein-coding 370-43 chr10 47155357 47155682 + 2 NA Intergenic L1ME5|LINE|L1 -144678 NM_004962 2662 Hs.2171 NM_004962 ENSG00000266524 GDF10 BIP|BMP-3b|BMP3B growth differentiation factor 10 protein-coding 302-188 chr18 75692458 75692619 + 2 NA Intergenic L1MB8|LINE|L1 19865 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 214-163 chr2 62702336 62702543 + 2 NA intron (NM_001142615, intron 1 of 22) intron (NM_001142615, intron 1 of 22) -3185 NM_001354212 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 639-58 chr2 53234670 53235258 + 2 NA Intergenic Intergenic -532349 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 200-50 chr11 80970666 80970862 + 2 NA Intergenic Intergenic -207961 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 223-344 chr8 86199684 86199879 + 2 NA Intergenic L2|LINE|L2 30600 NM_138817 157724 Hs.149095 NM_138817 ENSG00000164893 SLC7A13 AGT-1|AGT1|XAT2 solute carrier family 7 member 13 protein-coding 355-47 chr10 43501297 43501577 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 64326 NM_001355450 642819 Hs.719657 NM_001355444 ENSG00000243660 ZNF487 KRBO1|ZNF487P zinc finger protein 487 protein-coding 299-5 chr1 18411720 18411898 + 2 NA Intergenic Intergenic -69121 NM_152375 127707 Hs.406913 NM_152375 ENSG00000179023 KLHDC7A - kelch domain containing 7A protein-coding 353-524 chr8 78110133 78110480 + 2 NA Intergenic AluSx1|SINE|Alu -406034 NM_006823 5569 Hs.433700 NM_006823 ENSG00000171033 PKIA PRKACN1 cAMP-dependent protein kinase inhibitor alpha protein-coding 168-9 chr10 19361120 19361216 + 2 NA intron (NM_001142308, intron 26 of 39) MLT1J|LTR|ERVL-MaLR 312367 NM_001142308 340895 Hs.646734 NM_001142308 ENSG00000204740 MALRD1 C10orf112|DIET1|bA265G8.2 MAM and LDL receptor class A domain containing 1 protein-coding 371-51 chr10 75574390 75574658 + 2 NA intron (NM_001305581, intron 2 of 6) L2c|LINE|L2 22066 NR_030337 693191 NR_030337 ENSG00000207583 MIR606 MIRN606|hsa-mir-606 microRNA 606 ncRNA 501-82 chr17 75725519 75725930 + 2 NA intron (NM_001005619, intron 1 of 38) intron (NM_001005619, intron 1 of 38) 1028 NM_001005619 3691 Hs.632226 NM_000213 ENSG00000132470 ITGB4 CD104|GP150 integrin subunit beta 4 protein-coding 312-38 chr10 36530645 36530930 + 2 NA Intergenic Intergenic -595070 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 359-281 chr20 22743267 22743453 + 2 NA Intergenic L2a|LINE|L2 -58016 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 401-301 chr7 64166578 64166816 + 2 NA Intergenic A-rich|Low_complexity|Low_complexity -40506 NM_001159524 730291 Hs.723116 NM_001159524 ENSG00000223614 ZNF735 ZNF735P zinc finger protein 735 protein-coding 311-302 chr20 47770503 47770739 + 2 NA intron (NM_198596, intron 1 of 20) MLT1G1|LTR|ERVL-MaLR 15443 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 201-190 chr5 28332371 28332517 + 2 NA Intergenic L1PA16|LINE|L1 -44779 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 204-306 chr9 79494361 79494557 + 2 NA Intergenic hAT-N1_Mam|DNA|hAT-Tip100? -77314 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 264-280 chr3 139762387 139762644 + 2 NA Intergenic Intergenic -84465 NM_001320511 349565 Hs.208673 NM_178177 ENSG00000163864 NMNAT3 FKSG76|PNAT-3|PNAT3 nicotinamide nucleotide adenylyltransferase 3 protein-coding 494-62 chr14 46329370 46329760 + 2 NA intron (NR_102702, intron 3 of 3) intron (NR_102702, intron 3 of 3) -141794 NR_102700 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 265-77 chr12 39744259 39744438 + 2 NA intron (NR_135051, intron 13 of 18) L1MCa|LINE|L1 118165 NM_001319247 283461 Hs.648205 NM_001031748 ENSG00000180116 C12orf40 HEL-206|HEL-S-94 chromosome 12 open reading frame 40 protein-coding 425-91 chr14 83418776 83419048 + 2 NA Intergenic Intergenic 776280 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 403-79 chr12 62455545 62455852 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -11128 NM_001278470 23041 Hs.389378 NM_015026 ENSG00000061987 MON2 - MON2 homolog, regulator of endosome-to-Golgi trafficking protein-coding 308-396 chr5 119937833 119938086 + 2 NA Intergenic L1MEc|LINE|L1 308400 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 266-173 chr2 36722041 36722185 + 2 NA intron (NM_001177969, intron 2 of 14) intron (NM_001177969, intron 2 of 14) 25406 NM_001177970 5212 Hs.137415 NM_053276 ENSG00000205221 VIT VIT1 vitrin protein-coding 761-65 chr7 67556727 67557262 + 2 NA Intergenic Intergenic 221018 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 243-465 chr8 139544751 139544961 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL 158267 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 219-286 chr5 68571817 68571946 + 2 NA Intergenic L1ME2|LINE|L1 279304 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 201-85 chr15 24583278 24583395 + 2 NA intron (NR_026646, intron 8 of 8) L1MCa|LINE|L1 25179 NR_026646 791114 Hs.720900 NR_026646 ENSG00000259905 PWRN1 NCRNA00198 Prader-Willi region non-protein coding RNA 1 ncRNA 482-116 chr19 38289540 38289825 + 2 NA intron (NM_001166103, intron 3 of 5) intron (NM_001166103, intron 3 of 5) -14569 NM_033520 64073 Hs.631544 NM_022125 ENSG00000167644 C19orf33 H2RSP|IMUP|IMUP-1|IMUP-2 chromosome 19 open reading frame 33 protein-coding 398-133 chr16 88706541 88706841 + 2 NA promoter-TSS (NM_001171815) promoter-TSS (NM_001171815) 188 NM_001012762 348180 Hs.592074 NM_001012759 ENSG00000174177 CTU2 C16orf84|MFRG|NCS2|UPF0432 cytosolic thiouridylase subunit 2 protein-coding 422-213 chr4 79842682 79842997 + 2 NA intron (NR_026555, intron 1 of 1) L1PA3|LINE|L1 15368 NR_026555 118425 Hs.104215 NR_026555 ENSG00000251321 PCAT4 GDEP|PCA4|PCAN1 prostate cancer associated transcript 4 ncRNA 331-98 chr11 95393236 95393450 + 2 NA Intergenic L1MDa|LINE|L1 -160868 NM_001271594 143686 Hs.120633 NM_144665 ENSG00000149212 SESN3 SEST3 sestrin 3 protein-coding 387-133 chr16 60438096 60438475 + 2 NA Intergenic HAL1b|LINE|L1 -78492 NM_001282301 729159 NM_001282301 NPAP1L - nuclear pore associated protein 1 like protein-coding 180-102 chr22 42708879 42709030 + 2 NA intron (NM_001318038, intron 1 of 2) L1M5|LINE|L1 11916 NR_146459 53947 Hs.105956 NM_017436 ENSG00000128274 A4GALT A14GALT|A4GALT1|Gb3S|P(k)|P1|P1PK|PK alpha 1,4-galactosyltransferase (P blood group) protein-coding 293-69 chr11 97699264 97699475 + 2 NA Intergenic Intergenic 1190944 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 209-339 chr8 136727191 136727346 + 2 NA intron (NR_147196, intron 2 of 5) L1ME2|LINE|L1 196470 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 295-212 chr2 63636692 63636969 + 2 NA Intergenic L1MA9|LINE|L1 47679 NM_001199112 4190 Hs.526521 NM_005917 ENSG00000014641 MDH1 HEL-S-32|MDH-s|MDHA|MGC:1375|MOR2 malate dehydrogenase 1 protein-coding 162-84 chr3 63897072 63897189 + 2 NA intron (NM_000333, intron 1 of 12) intron (NM_000333, intron 1 of 12) -1269 NM_001177387 6314 Hs.476595 NM_000333 ENSG00000163635 ATXN7 ADCAII|OPCA3|SCA7|SGF73 ataxin 7 protein-coding 221-197 chr3 103515339 103515509 + 2 NA Intergenic L1MA4|LINE|L1 8692 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 202-150 chr21 35954023 35954173 + 2 NA TTS (NR_110418) TTS (NR_110418) 50569 NR_110418 101928269 Hs.589909 NR_110418 LOC101928269 - uncharacterized LOC101928269 ncRNA 241-273 chr4 90895757 90895908 + 2 NA intron (NM_001145065, intron 8 of 10) intron (NM_001145065, intron 8 of 10) 660801 NM_207491 401145 Hs.654735 NM_207491 ENSG00000184305 CCSER1 FAM190A coiled-coil serine rich protein 1 protein-coding 332-418 chr5 63998576 63998815 + 2 NA Intergenic Intergenic -36403 NM_000524 3350 Hs.247940 NM_000524 ENSG00000178394 HTR1A 5-HT-1A|5-HT1A|5HT1a|ADRB2RL1|ADRBRL1|G-21|PFMCD 5-hydroxytryptamine receptor 1A protein-coding 366-436 chr8 66297494 66297722 + 2 NA Intergenic Intergenic 105494 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 439-261 chr7 25030729 25031046 + 2 NA Intergenic LTR67B|LTR|ERVL -50709 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 458-98 chr17 34006317 34006647 + 2 NA intron (NM_001094, intron 1 of 9) L2b|LINE|L2 150324 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 396-97 chr13 53481647 53482008 + 2 NA Intergenic Intergenic -329927 NR_125788 102723875 Hs.149083 NR_125788 LINC01065 - long intergenic non-protein coding RNA 1065 ncRNA 550-11 chr1 118376514 118376992 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -191525 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 476-125 chr19 28406366 28406734 + 2 NA Intergenic Intergenic -200138 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 447-259 chr8 57782470 57782789 + 2 NA Intergenic Intergenic 36480 NR_134276 286178 Hs.255156 NR_134276 ENSG00000254139 LOC286178 - uncharacterized LOC286178 ncRNA 294-79 chr12 37949228 37949497 + 2 NA Intergenic ALR/Alpha|Satellite|centr -367412 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 574-41 chr14 81265722 81266137 + 2 NA 3' UTR (NM_001366850, exon 8 of 8) 3' UTR (NM_001366850, exon 8 of 8) -44539 NM_201595 2957 Hs.592334 NM_015859 ENSG00000165417 GTF2A1 TF2A1|TFIIA|TFIIA-42|TFIIAL general transcription factor IIA subunit 1 protein-coding 327-512 chr8 142106245 142106529 + 2 NA Intergenic Intergenic -69952 NR_039682 100616268 NR_039682 ENSG00000265247 MIR4472-1 - microRNA 4472-1 ncRNA 396-374 chr9 85167797 85168082 + 2 NA Intergenic Intergenic 462038 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 300-475 chr8 104829273 104829440 + 2 NA Intergenic Intergenic -240332 NM_013437 29967 Hs.600630 NM_013437 ENSG00000147650 LRP12 MIG13A|ST7 LDL receptor related protein 12 protein-coding 456-118 chr16 6547576 6548008 + 2 NA intron (NM_018723, intron 2 of 15) intron (NM_018723, intron 2 of 15) -226017 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 374-17 chr1 181149668 181149945 + 2 NA Intergenic LTR79|LTR|ERVL -24678 NR_125966 101928973 Hs.637822 NR_125966 ENSG00000237292 LINC01732 - long intergenic non-protein coding RNA 1732 ncRNA 371-296 chr4 181617322 181617605 + 2 NA Intergenic Intergenic 212510 NR_147188 105377573 Hs.333288 NR_147188 ENSG00000251336 TEMN3-AS1 - TENM3 antisense transcript 1 ncRNA 376-287 chr4 89558761 89559036 + 2 NA Intergenic MER67C|LTR|ERV1 -251098 NM_198281 285513 Hs.100912 NM_198281 ENSG00000185477 GPRIN3 GRIN3 GPRIN family member 3 protein-coding 207-64 chr12 16932204 16932382 + 2 NA Intergenic (TTCA)n|Simple_repeat|Simple_repeat -56454 NR_036619 728622 Hs.741380 NR_036619 SKP1P2 SKP1B|p19B S-phase kinase associated protein 1 pseudogene 2 pseudo 467-293 chr9 24729926 24730249 + 2 NA Intergenic Intergenic -184190 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 362-341 chr5 30466667 30466868 + 2 NA Intergenic L1M3c|LINE|L1 586207 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 370-456 chr8 132274122 132274473 + 2 NA intron (NM_004519, intron 1 of 14) THE1B|LTR|ERVL-MaLR -169032 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 710-30 chr14 62993085 62993604 + 2 NA intron (NM_139318, intron 4 of 10) L1PB4|LINE|L1 52114 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 262-120 chr14 42550685 42550865 + 2 NA Intergenic L1ME3B|LINE|L1 943919 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 474-211 chr4 71699199 71699512 + 2 NA Intergenic Intergenic 84724 NM_000583 2638 Hs.418497 NM_000583 ENSG00000145321 GC DBP|DBP-maf|DBP/GC|GRD3|Gc-MAF|GcMAF|HEL-S-51|VDB|VDBG|VDBP GC vitamin D binding protein protein-coding 317-258 chr2 179077276 179077481 + 2 NA Intergenic L1PA7|LINE|L1 -27241 NM_001316745 285025 Hs.324341 NM_173648 ENSG00000163492 CCDC141 CAMDI coiled-coil domain containing 141 protein-coding 207-241 chr5 50868636 50868781 + 2 NA Intergenic Intergenic 101479 NR_104653 100287592 Hs.519298 NR_104653 ENSG00000251573 LINC02106 - long intergenic non-protein coding RNA 2106 ncRNA 213-302 chr9 95248349 95248522 + 2 NA intron (NM_001243744, intron 2 of 13) intron (NM_001243744, intron 2 of 13) 68819 NM_001243743 2176 Hs.494529 NM_000136 ENSG00000158169 FANCC FA3|FAC|FACC FA complementation group C protein-coding 466-60 chr12 25848218 25848518 + 2 NA Intergenic Intergenic 25711 NR_036188 100422897 NR_036188 ENSG00000283603 MIR4302 - microRNA 4302 ncRNA 347-353 chr4 91762824 91763031 + 2 NA Intergenic Intergenic 514375 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 333-532 chr7 31831905 31832111 + 2 NA intron (NM_001191059, intron 12 of 18) intron (NM_001191059, intron 12 of 18) 144793 NM_006658 10842 Hs.227011 NM_006658 ENSG00000106341 PPP1R17 C7orf16|GSBS protein phosphatase 1 regulatory subunit 17 protein-coding 513-215 chr4 174411067 174411406 + 2 NA Intergenic L1M4|LINE|L1 -12559 NR_036236 100423042 NR_036236 ENSG00000265846 MIR4276 - microRNA 4276 ncRNA 309-565 chr8 134327982 134328219 + 2 NA Intergenic Intergenic -269971 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 373-421 chr8 119056557 119056866 + 2 NA intron (NM_001324095, intron 3 of 7) intron (NM_001324095, intron 3 of 7) -10536 NM_006438 10584 Hs.176615 NM_006438 ENSG00000184374 COLEC10 3MC3|CL-34|CLL1 collectin subfamily member 10 protein-coding 262-13 chr1 80372128 80372322 + 2 NA Intergenic Intergenic -163530 NR_125941 101927412 Hs.171273 NR_125940 ENSG00000234184 LINC01781 - long intergenic non-protein coding RNA 1781 ncRNA 194-209 chr8 90463903 90464068 + 2 NA Intergenic Intergenic 142078 NR_104062 101937451 Hs.583685 NR_104062 ENSG00000253799 LINC01030 - long intergenic non-protein coding RNA 1030 ncRNA 333-180 chr16 82327441 82327618 + 2 NA Intergenic Intergenic -157305 NM_005792 10200 Hs.344400 NM_005792 ENSG00000135698 MPHOSPH6 MPP|MPP-6|MPP6 M-phase phosphoprotein 6 protein-coding 338-591 chr9 79390920 79391143 + 2 NA Intergenic MER58A|DNA|hAT-Charlie -180742 NM_001351562 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 343-476 chr6 95697165 95697357 + 2 NA Intergenic Intergenic 119726 NM_024641 79694 Hs.734632 NM_024641 ENSG00000172469 MANEA ENDO|hEndo mannosidase endo-alpha protein-coding 290-185 chr18 62990507 62990712 + 2 NA Intergenic L1MEh|LINE|L1 275068 NM_194449 23239 Hs.465337 NM_194449 ENSG00000081913 PHLPP1 PHLPP|PLEKHE1|PPM3A|SCOP PH domain and leucine rich repeat protein phosphatase 1 protein-coding 526-222 chr6 163069414 163069936 + 2 NA intron (NM_001080379, intron 3 of 4) L1MA3|LINE|L1 -15514 NR_110871 101929239 Hs.571035 NR_110871 ENSG00000225437 PACRG-AS2 - PACRG antisense RNA 2 ncRNA 385-276 chr4 81318899 81319244 + 2 NA Intergenic LTR78|LTR|ERV1 -103849 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 482-78 chr14 75334471 75334785 + 2 NA Intergenic Intergenic 40224 NR_038421 731223 Hs.534624 NR_038421 LINC01220 - long intergenic non-protein coding RNA 1220 ncRNA 346-218 chr19 37062878 37063180 + 2 NA Intergenic Intergenic -15193 NM_001329518 147923 Hs.444992 NM_144689 ENSG00000197050 ZNF420 APAK zinc finger protein 420 protein-coding 508-244 chr8 121598471 121598811 + 2 NA Intergenic MIR|SINE|MIR -40705 NR_002835 594842 Hs.668686 NR_002835 HAS2-AS1 HAS2-AS|HAS2AS|HASNT|NCRNA00077 HAS2 antisense RNA 1 ncRNA 267-138 chr16 63679445 63679648 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR 1442517 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 345-121 chr12 94813219 94813531 + 2 NA Intergenic L1M4|LINE|L1 -21023 NR_030171 574449 NR_030171 ENSG00000283998 MIR492 MIRN492|hsa-mir-492 microRNA 492 ncRNA 336-387 chr4 15382558 15382853 + 2 NA intron (NM_001135171, intron 1 of 2) intron (NM_001135171, intron 1 of 2) 8154 NM_001135171 114905 Hs.153714 NM_031911 ENSG00000163145 C1QTNF7 CTRP7|ZACRP7 C1q and TNF related 7 protein-coding 291-312 chr4 32185460 32185698 + 2 NA Intergenic Intergenic -163157 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 372-483 chr8 76238249 76238562 + 2 NA Intergenic Intergenic -168249 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 533-174 chr5 30323752 30324176 + 2 NA Intergenic L1PB|LINE|L1 443404 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 302-40 chr10 22179601 22179867 + 2 NA Intergenic L1ME1|LINE|L1 30249 NM_001199938 340900 Hs.450519 NM_001199938 ENSG00000223601 EBLN1 EBLN-1 endogenous Bornavirus like nucleoprotein 1 protein-coding 159-95 chr8 101569090 101569225 + 2 NA intron (NM_024915, intron 4 of 15) intron (NM_024915, intron 4 of 15) 76718 NM_024915 79977 Hs.661088 NM_024915 ENSG00000083307 GRHL2 BOM|DFNA28|ECTDS|PPCD4|TFCP2L3 grainyhead like transcription factor 2 protein-coding 465-286 chr8 65312985 65313382 + 2 NA Intergenic L1MEd|LINE|L1 -132843 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 195-243 chr8 134210490 134210656 + 2 NA Intergenic L1MC1|LINE|L1 324077 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 345-129 chr13 22492811 22493046 + 2 NA Intergenic Intergenic 282643 NR_103810 100506622 Hs.255773 NR_103810 ENSG00000276476 LINC00540 - long intergenic non-protein coding RNA 540 ncRNA 499-72 chr14 88955373 88955680 + 2 NA Intergenic Intergenic 130875 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 377-40 chr10 37908433 37908681 + 2 NA Intergenic AluSx1|SINE|Alu -50454 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 317-98 chr11 130680654 130680847 + 2 NA intron (NM_001271983, intron 1 of 2) L1MB4|LINE|L1 7794 NM_001271983 283171 Hs.376151 NM_001271983 C11orf44 - chromosome 11 open reading frame 44 protein-coding 512-10 chr1 177669502 177669851 + 2 NA Intergenic Intergenic -30848 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 811-33 chr3 117102853 117103285 + 2 NA Intergenic Intergenic 181638 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 859-23 chr21 25148057 25148615 + 2 NA Intergenic L1MA2|LINE|L1 283365 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 237-151 chr18 75587039 75587269 + 2 NA Intergenic Intergenic 125249 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 632-12 chr10 81556829 81557202 + 2 NA Intergenic Intergenic -318179 NM_001370084 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 349-178 chr15 54474214 54474499 + 2 NA intron (NM_001329919, intron 18 of 31) L1MA4A|LINE|L1 461708 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 323-441 chr5 178899957 178900190 + 2 NA intron (NM_030613, intron 1 of 4) intron (NM_030613, intron 1 of 4) 4160 NM_030613 80108 Hs.654533 NM_030613 ENSG00000198939 ZFP2 ZNF751|zfp-2 ZFP2 zinc finger protein protein-coding 257-394 chr7 94775692 94775892 + 2 NA Intergenic L1MA4|LINE|L1 119422 NM_001172438 23089 Hs.147492 NM_015068 ENSG00000242265 PEG10 EDR|HB-1|MEF3L|Mar2|Mart2|RGAG3|RTL2|SIRH1 paternally expressed 10 protein-coding 629-56 chr19 28784306 28784741 + 2 NA Intergenic L1PA17|LINE|L1 -56829 NR_110759 100420587 Hs.569956 NR_110759 ENSG00000283403 LOC100420587 - SHC binding and spindle associated 1 pseudogene pseudo 564-202 chr8 120103471 120103830 + 2 NA Intergenic Intergenic -21452 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 395-270 chr5 41632381 41632758 + 2 NA Intergenic L1ME1|LINE|L1 -121968 NM_001005473 345557 Hs.145404 NM_001005473 ENSG00000182836 PLCXD3 - phosphatidylinositol specific phospholipase C X domain containing 3 protein-coding 322-521 chr8 73249735 73249950 + 2 NA intron (NM_001243237, intron 3 of 3) intron (NM_001243237, intron 3 of 3) 9660 NM_001243237 100130301 Hs.202296 NM_001243237 ENSG00000274443 C8orf89 - chromosome 8 open reading frame 89 protein-coding 302-39 chr10 21434655 21434936 + 2 NA Intergenic Intergenic -61845 NR_155751 105376444 Hs.638243 NR_155751 LINC02643 - long intergenic non-protein coding RNA 2643 ncRNA 505-72 chr13 36211817 36212172 + 2 NA intron (NM_001198910, intron 6 of 15) intron (NM_001198910, intron 6 of 15) 2562 NM_017826 54937 Hs.124519 NM_017826 ENSG00000120669 SOHLH2 SOSF2|SPATA28|TEB1|bHLHe81 spermatogenesis and oogenesis specific basic helix-loop-helix 2 protein-coding 336-138 chr12 77637958 77638182 + 2 NA Intergenic Intergenic -192824 NM_001024383 89795 Hs.655301 NM_014903 ENSG00000067798 NAV3 POMFIL1|STEERIN3|unc53H3 neuron navigator 3 protein-coding 320-86 chr11 55896050 55896340 + 2 NA Intergenic Intergenic 12898 NM_032681 84767 Hs.326734 NM_032681 ENSG00000124900 TRIM51 SPRYD5|TRIM51A tripartite motif-containing 51 protein-coding 318-305 chr2 211553498 211553782 + 2 NA intron (NM_001042599, intron 20 of 26) MIR|SINE|MIR 872720 NR_031643 100313771 NR_031643 ENSG00000221782 MIR548F2 MIR548F-2|MIRN548F2|hsa-mir-548f-2 microRNA 548f-2 ncRNA 277-219 chr20 2895833 2895992 + 2 NA intron (NM_080840, intron 1 of 22) intron (NM_080840, intron 1 of 22) 22416 NM_080840 5786 Hs.269577 NM_002836 ENSG00000132670 PTPRA HEPTP|HLPR|HPTPA|HPTPalpha|LRP|PTPA|PTPRL2|R-PTP-alpha|RPTPA protein tyrosine phosphatase receptor type A protein-coding 130-17 chr12 9046588 9046668 + 2 NA Intergenic L1MCa|LINE|L1 18442 NR_034140 253128 Hs.408739 NM_001039381 ENSG00000214851 LINC00612 C12orf33 long intergenic non-protein coding RNA 612 ncRNA 257-195 chr2 82396946 82397146 + 2 NA Intergenic L1M1|LINE|L1 -459757 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 194-162 chr5 22483407 22483553 + 2 NA intron (NM_004061, intron 2 of 14) L2a|LINE|L2 -269630 NM_001364107 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 277-45 chr10 26494169 26494352 + 2 NA intron (NM_019043, intron 3 of 14) intron (NM_019043, intron 3 of 14) 55919 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 304-12 chr1 88416180 88416404 + 2 NA Intergenic AluJb|SINE|Alu -267852 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 321-272 chr19 56365651 56365871 + 2 NA intron (NM_001322072, intron 1 of 6) L1MCa|LINE|L1 -2338 NR_003127 147947 Hs.467326 NM_194319 ENSG00000240225 ZNF542P ZNF542 zinc finger protein 542, pseudogene pseudo 505-242 chr5 78854939 78855349 + 2 NA intron (NM_198709, intron 6 of 7) L1MA5|LINE|L1 130166 NM_000046 411 Hs.149103 NM_000046 ENSG00000113273 ARSB ASB|G4S|MPS6 arylsulfatase B protein-coding 407-157 chr2 191745669 191745902 + 2 NA Intergenic Intergenic -47055 NR_157850 729254 NR_157850 LOC729254 - hCG2045843 ncRNA 473-275 chr8 88916347 88916710 + 2 NA Intergenic Intergenic -589045 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 289-244 chr2 139283560 139283728 + 2 NA Intergenic L1PB1|LINE|L1 386320 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 313-378 chr4 44412764 44412963 + 2 NA intron (NM_198353, intron 1 of 1) intron (NM_198353, intron 1 of 1) 35946 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 386-135 chr18 4587837 4588131 + 2 NA Intergenic Intergenic -132677 NM_004746 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 507-150 chr20 41869392 41869830 + 2 NA Intergenic L1MDa|LINE|L1 -251234 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 204-102 chr15 65731933 65732086 + 2 NA intron (NM_005848, intron 8 of 31) MER58A|DNA|hAT-Charlie -12677 NR_039736 100616379 NR_039736 ENSG00000264737 MIR4511 mir-4511 microRNA 4511 ncRNA 278-155 chr17 10973062 10973252 + 2 NA Intergenic L1ME4a|LINE|L1 -135070 NM_001101387 644139 Hs.553909 NM_001101387 ENSG00000233670 PIRT - phosphoinositide interacting regulator of transient receptor potential channels protein-coding 188-86 chr19 15662863 15663004 + 2 NA TTS (NM_001199208) TTS (NM_001199208) -10154 NM_023944 66002 Hs.131459 NM_023944 ENSG00000186204 CYP4F12 CYPIVF12|F22329_1 cytochrome P450 family 4 subfamily F member 12 protein-coding 674-45 chr2 89802268 89802725 + 2 NA Intergenic Intergenic -164589 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 569-185 chr8 142871210 142871544 + 2 NA TTS (NM_000497) TTS (NM_000497) 8443 NM_001026213 1584 Hs.184927 NM_000497 ENSG00000160882 CYP11B1 CPN1|CYP11B|FHI|P450C11 cytochrome P450 family 11 subfamily B member 1 protein-coding 439-219 chr4 158554792 158555113 + 2 NA intron (NR_045579, intron 2 of 17) intron (NR_045579, intron 2 of 17) 33070 NM_001253732 59350 Hs.591686 NM_021634 ENSG00000171509 RXFP1 LGR7|RXFPR1 relaxin family peptide receptor 1 protein-coding 375-48 chr10 51460339 51460672 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 160932 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 435-159 chr3 138545017 138545427 + 2 NA intron (NM_001288967, intron 2 of 13) MER11A|LTR|ERVK 46734 NM_001320600 80321 Hs.531962 NM_024491 ENSG00000114107 CEP70 BITE centrosomal protein 70 protein-coding 391-332 chr7 104050978 104051297 + 2 NA Intergenic Intergenic -61479 NM_005045 5649 Hs.655654 NM_005045 ENSG00000189056 RELN ETL7|LIS2|PRO1598|RL reelin protein-coding 439-186 chr3 102974947 102975298 + 2 NA Intergenic LTR41B|LTR|ERVL 540107 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 212-355 chr9 117911884 117912075 + 2 NA Intergenic L1MB3|LINE|L1 207576 NM_138554 7099 Hs.174312 NM_003266 ENSG00000136869 TLR4 ARMD10|CD284|TLR-4|TOLL toll like receptor 4 protein-coding 346-493 chr8 108622176 108622490 + 2 NA intron (NR_136411, intron 2 of 3) MIRb|SINE|MIR 165261 NM_153015 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 245-54 chr10 71948325 71948489 + 2 NA Intergenic Intergenic -15988 NM_004273 9469 Hs.158304 NM_004273 ENSG00000122863 CHST3 C6ST|C6ST1|HSD carbohydrate sulfotransferase 3 protein-coding 227-299 chr5 156648260 156648449 + 2 NA intron (NM_001128209, intron 6 of 7) intron (NM_001128209, intron 6 of 7) -201941 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 257-66 chr11 83784440 83784644 + 2 NA intron (NM_001142699, intron 18 of 27) intron (NM_001142699, intron 18 of 27) -102117 NM_001142702 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 330-253 chr2 32766377 32766605 + 2 NA intron (NM_017735, intron 13 of 19) Tigger1|DNA|TcMar-Tigger -58942 NR_027099 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 354-206 chr2 47771481 47771768 + 2 NA Intergenic Intergenic -11458 NM_001281493 2956 Hs.445052 NM_000179 ENSG00000116062 MSH6 GTBP|GTMBP|HNPCC5|HSAP|p160 mutS homolog 6 protein-coding 320-581 chr8 138988251 138988515 + 2 NA Intergenic MLT1G3|LTR|ERVL-MaLR -74342 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 247-185 chr2 25019104 25019292 + 2 NA intron (NR_034113, intron 2 of 2) Tigger5b|DNA|TcMar-Tigger -22878 NM_014971 22979 Hs.4892 NM_014971 ENSG00000084710 EFR3B KIAA0953 EFR3 homolog B protein-coding 251-347 chr6 129865209 129865437 + 2 NA Intergenic MER57C2|LTR|ERV1 -4008 NM_001010876 253582 NM_001010876 ENSG00000203756 TMEM244 C6orf191|bA174C7.4 transmembrane protein 244 protein-coding 416-356 chr9 135645485 135645835 + 2 NA Intergenic L1MEh|LINE|L1 -6120 NM_182974 360203 Hs.522491 NM_182974 ENSG00000204007 GLT6D1 GLTDC1|GT6M7 glycosyltransferase 6 domain containing 1 protein-coding 369-211 chr2 120662502 120662824 + 2 NA Intergenic Intergenic -73205 NM_001371271 341-411 chr4 179193063 179193297 + 2 NA Intergenic L1MB5|LINE|L1 -1285244 NR_108092 101928656 Hs.508131 NR_108092 ENSG00000251504 LINC01099 - long intergenic non-protein coding RNA 1099 ncRNA 199-179 chr4 38829496 38829658 + 2 NA intron (NM_006068, intron 1 of 1) intron (NM_006068, intron 1 of 1) -24786 NM_003263 7096 Hs.621817 NM_003263 ENSG00000174125 TLR1 CD281|TIL|TIL. LPRS5|rsc786 toll like receptor 1 protein-coding 269-431 chr9 96806884 96807065 + 2 NA Intergenic L1M3|LINE|L1 -28845 NM_014930 22869 Hs.75264 NM_014930 ENSG00000081386 ZNF510 - zinc finger protein 510 protein-coding 311-263 chr2 99888109 99888355 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 217351 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 512-84 chr15 25537167 25537624 + 2 NA Intergenic Tigger3c|DNA|TcMar-Tigger -98339 NM_130838 7337 Hs.598862 NM_000462 ENSG00000114062 UBE3A ANCR|AS|E6-AP|EPVE6AP|HPVE6A ubiquitin protein ligase E3A protein-coding 479-195 chr5 55998536 55998893 + 2 NA intron (NR_102755, intron 1 of 1) intron (NR_102755, intron 1 of 1) 3547 NR_102755 441072 Hs.482141 NR_102755 ENSG00000227908 FLJ31104 - uncharacterized LOC441072 ncRNA 325-495 chr7 25033866 25034112 + 2 NA Intergenic Intergenic -53811 NM_015550 26031 Hs.520259 NM_015550 ENSG00000070882 OSBPL3 ORP-3|ORP3|OSBP3 oxysterol binding protein like 3 protein-coding 274-210 chr2 80189837 80190038 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) 114815 NM_178839 347730 Hs.591580 NM_178839 ENSG00000162951 LRRTM1 - leucine rich repeat transmembrane neuronal 1 protein-coding 588-64 chr2 5585801 5586190 + 2 NA Intergenic L1MB7|LINE|L1 105123 NR_110580 102723818 Hs.128107 NR_110580 LINC01248 - long intergenic non-protein coding RNA 1248 ncRNA 265-298 chr5 20337653 20337886 + 2 NA intron (NM_001349556, intron 1 of 13) THE1B-int|LTR|ERVL-MaLR 32218 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 459-154 chr2 194367980 194368298 + 2 NA intron (NR_110222, intron 1 of 5) L1MC4a|LINE|L1 23870 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 300-289 chr3 120191287 120191476 + 2 NA intron (NM_001168271, intron 4 of 8) L1ME1|LINE|L1 52914 NM_153002 165829 Hs.333358 NM_153002 ENSG00000175697 GPR156 GABABL|PGR28 G protein-coupled receptor 156 protein-coding 305-118 chr12 37923163 37923392 + 2 NA Intergenic ALR/Alpha|Satellite|centr -393497 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 204-299 chr8 135841852 135842039 + 2 NA Intergenic Intergenic 384489 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 412-293 chr6 160555395 160555749 + 2 NA intron (NM_005577, intron 30 of 38) (AT)n|Simple_repeat|Simple_repeat -44448 NR_028092 80350 Hs.654503 NM_024492 ENSG00000213071 LPAL2 APOA2|APOAL|APOARGC|apo(a)rg-C lipoprotein(a) like 2, pseudogene pseudo 325-278 chr2 120419720 120419920 + 2 NA Intergenic (ATCC)n|Simple_repeat|Simple_repeat 46529 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 607-52 chr16 64768458 64769047 + 2 NA Intergenic MIRb|SINE|MIR 353311 NM_001308392 1009 Hs.116471 NM_001797 ENSG00000140937 CDH11 CAD11|CDHOB|ESWS|OB|OSF-4 cadherin 11 protein-coding 491-123 chr2 105664829 105665184 + 2 NA Intergenic L1ME2|LINE|L1 -54447 NR_038891 285000 Hs.737917 NR_038891 LOC285000 - uncharacterized LOC285000 ncRNA 269-309 chr5 39184402 39184628 + 2 NA intron (NM_001243093, intron 2 of 18) intron (NM_001243093, intron 2 of 18) 35048 NM_018594 2533 Hs.370503 NM_001465 ENSG00000082074 FYB1 ADAP|FYB|PRO0823|SLAP-130|SLAP130|THC3 FYN binding protein 1 protein-coding 270-289 chr5 25405736 25405923 + 2 NA Intergenic Intergenic 214876 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 224-22 chr1 232450785 232450998 + 2 NA intron (NM_020808, intron 8 of 20) intron (NM_020808, intron 8 of 20) 64717 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 468-341 chr9 122747436 122747835 + 2 NA Intergenic L1MD|LINE|L1 -2213 NM_001004453 392390 Hs.553790 NM_001004453 ENSG00000171459 OR1L6 HG16|OR1K1|OR1L7|OR9-30 olfactory receptor family 1 subfamily L member 6 protein-coding 418-178 chr4 32526155 32526489 + 2 NA Intergenic Intergenic 175284 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 261-296 chr4 163315914 163316095 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 16592 NM_000909 4886 Hs.519057 NM_000909 ENSG00000164128 NPY1R NPY1-R|NPYR neuropeptide Y receptor Y1 protein-coding 685-12 chr11 14708248 14708694 + 2 NA intron (NM_000922, intron 1 of 15) intron (NM_000922, intron 1 of 15) 64667 NM_000922 5140 Hs.445711 NM_000922 ENSG00000152270 PDE3B HcGIP1|cGIPDE1 phosphodiesterase 3B protein-coding 411-18 chr1 217192451 217192793 + 2 NA Intergenic Intergenic -54920 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 608-151 chr7 90968243 90968744 + 2 NA intron (NM_012395, intron 8 of 13) intron (NM_012395, intron 8 of 13) 258677 NM_001287137 5218 Hs.258576 NM_012395 ENSG00000058091 CDK14 PFTAIRE1|PFTK1 cyclin dependent kinase 14 protein-coding 502-117 chr18 2397968 2398311 + 2 NA Intergenic Intergenic 173366 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 455-135 chr2 183538616 183539010 + 2 NA Intergenic Intergenic 414370 NM_138285 129401 Hs.180591 NM_138285 ENSG00000163002 NUP35 MP-44|MP44|NP44|NUP53 nucleoporin 35 protein-coding 471-195 chr4 95826781 95827075 + 2 NA Intergenic L1M5|LINE|L1 -13165 NM_005390 5161 Hs.131361 NM_005390 ENSG00000163114 PDHA2 PDHAL pyruvate dehydrogenase E1 alpha 2 subunit protein-coding 323-343 chr3 122584036 122584225 + 2 NA intron (NM_001113523, intron 1 of 11) L1MEc|LINE|L1 6480 NM_001308320 165631 Hs.120250 NM_152615 ENSG00000173200 PARP15 ARTD7|BAL3|pART7 poly(ADP-ribose) polymerase family member 15 protein-coding 248-271 chr4 31998774 31998967 + 2 NA intron (NR_125936, intron 1 of 2) MIRb|SINE|MIR 1491 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 199-51 chr13 110775168 110775283 + 2 NA Intergenic L1MEg|LINE|L1 37859 NR_135280 283486 Hs.447504 NR_135280 ENSG00000259831 LINC00567 - long intergenic non-protein coding RNA 567 ncRNA 378-407 chr7 66623208 66623565 + 2 NA Intergenic LTR67B|LTR|ERVL -5495 NM_001167961 154881 Hs.546627 NM_153033 ENSG00000243335 KCTD7 CLN14|EPM3 potassium channel tetramerization domain containing 7 protein-coding 651-59 chr2 33996191 33996674 + 2 NA intron (NR_126403, intron 4 of 5) L1M3e|LINE|L1 -70794 NR_132381 106144585 Hs.580486 NR_132381 ENSG00000237790 LINC01318 - long intergenic non-protein coding RNA 1318 ncRNA 1034-22 chr9 87331139 87331794 + 2 NA Intergenic MLT1G3-int|LTR|ERVL-MaLR -165762 NM_001288731 1612 Hs.380277 NM_004938 ENSG00000196730 DAPK1 DAPK|ROCO3 death associated protein kinase 1 protein-coding 524-96 chr18 12492612 12493012 + 2 NA intron (NM_001128626, intron 8 of 16) intron (NM_001128626, intron 8 of 16) 60038 NR_136514 105371998 Hs.515283 NR_136514 LOC105371998 - uncharacterized LOC105371998 ncRNA 419-184 chr3 80093490 80093906 + 2 NA Intergenic Intergenic -325700 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 341-169 chr15 69007438 69007687 + 2 NA intron (NR_033672, intron 2 of 16) MER57A-int|LTR|ERV1 -7133 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 247-149 chr16 53858600 53858799 + 2 NA intron (NR_156761, intron 3 of 4) AluSc|SINE|Alu 154543 NM_001080432 79068 Hs.528833 NM_001080432 ENSG00000140718 FTO ALKBH9|BMIQ14|GDFD FTO alpha-ketoglutarate dependent dioxygenase protein-coding 232-99 chr14 59433489 59433638 + 2 NA Intergenic L3b|LINE|CR1 31817 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 392-200 chr3 49085795 49086088 + 2 NA intron (NM_001320584, intron 1 of 9) intron (NM_001320584, intron 1 of 9) 7691 NM_001320583 54870 Hs.297389 NM_017730 ENSG00000198218 QRICH1 AB-DIP|VERBRAS glutamine rich 1 protein-coding 474-262 chr7 27484881 27485205 + 2 NA Intergenic AluSx3|SINE|Alu -130931 NR_122123 790953 Hs.571330 NR_122122 TSL - testis-expressed, seven-twelve, leukemia ncRNA 539-120 chr2 122267878 122268279 + 2 NA Intergenic Intergenic 512427 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 237-108 chr14 68725802 68725959 + 2 NA Intergenic Intergenic 68034 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 419-259 chr6 137960146 137960419 + 2 NA Intergenic Intergenic -14482 NR_149097 105378020 Hs.520420 NR_149097 ENSG00000226004 LINC02528 - long intergenic non-protein coding RNA 2528 ncRNA 463-276 chr7 156292191 156292641 + 2 NA Intergenic L1MEc|LINE|L1 153172 NR_038232 285889 Hs.407095 NR_038232 ENSG00000182648 LOC285889 - uncharacterized LOC285889 ncRNA 228-218 chr3 104081863 104082046 + 2 NA Intergenic Intergenic -557838 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 374-417 chr9 84466415 84466690 + 2 NA Intergenic AluJr|SINE|Alu -97825 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 365-374 chr7 56717051 56717380 + 2 NA Intergenic AluSx|SINE|Alu 95521 NR_130727 401357 Hs.457696 NR_130727 LOC401357 - uncharacterized LOC401357 ncRNA 316-340 chr3 13829060 13829328 + 2 NA intron (NM_004625, intron 3 of 3) MLT1L|LTR|ERVL-MaLR 50877 NM_004625 7476 Hs.72290 NM_004625 ENSG00000154764 WNT7A Wnt-7a Wnt family member 7A protein-coding 329-97 chr11 79861245 79861444 + 2 NA Intergenic Intergenic -420314 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 387-356 chr8 40260869 40261108 + 2 NA Intergenic L1ME3B|LINE|L1 82375 NR_156738 112543493 NR_156738 SIRLNT lncRNA-PRLB SIRT1 regulating lncRNA tumor promoter ncRNA 130-32 chr18 40164331 40164451 + 2 NA Intergenic Charlie2b|DNA|hAT-Charlie 98105 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 378-305 chr4 46334170 46334540 + 2 NA intron (NM_001114175, intron 2 of 8) intron (NM_001114175, intron 2 of 8) 55024 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 301-383 chr5 167578642 167578870 + 2 NA intron (NM_001368145, intron 1 of 26) intron (NM_001368145, intron 1 of 26) 5097 NM_001368146 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 343-550 chr8 112913805 112914095 + 2 NA intron (NM_001363185, intron 8 of 66) intron (NM_001363185, intron 8 of 66) 270457 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 338-498 chr7 29359255 29359553 + 2 NA intron (NM_001293071, intron 2 of 11) L2a|LINE|L2 -120308 NR_120524 1124 Hs.654611 NM_004067 ENSG00000106069 CHN2 ARHGAP3|BCH|CHN2-3|RHOGAP3 chimerin 2 protein-coding 566-5 chr1 91551388 91551832 + 2 NA Intergenic Intergenic 50502 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 372-530 chrX 99643384 99643711 + 2 NA Intergenic Intergenic 766726 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 328-130 chr13 67717547 67717742 + 2 NA Intergenic MER67D|LTR|ERV1 345257 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 125-52 chr5 22978513 22978617 + 2 NA Intergenic L1PB1|LINE|L1 -125221 NM_001364104 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 332-152 chr14 66142304 66142517 + 2 NA Intergenic L1PA13|LINE|L1 -343961 NM_001351576 440184 Hs.412138 NM_001004331 ENSG00000196553 CCDC196 C14orf53|LINC00238|NCRNA00238 coiled-coil domain containing 196 protein-coding 488-273 chr8 113522372 113522776 + 2 NA Intergenic MER50-int|LTR|ERV1 -85635 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 337-153 chr14 66795668 66795857 + 2 NA intron (NM_001024218, intron 3 of 21) L1MA2|LINE|L1 288355 NM_020806 10243 Hs.208765 NM_020806 ENSG00000171723 GPHN GEPH|GPH|GPHRYN|HKPX1|MOCODC gephyrin protein-coding 338-182 chr15 71154499 71154701 + 2 NA intron (NM_024817, intron 1 of 16) MIRb|SINE|MIR 13151 NM_024817 79875 Hs.387057 NM_024817 ENSG00000187720 THSD4 ADAMTSL-6|ADAMTSL6|FVSY9334|PRO34005 thrombospondin type 1 domain containing 4 protein-coding 331-471 chr6 139456762 139457008 + 2 NA Intergenic Intergenic 17711 NR_033919 645434 Hs.666240 NR_033919 ENSG00000238099 LINC01625 - long intergenic non-protein coding RNA 1625 ncRNA 325-10 chr1 64190880 64191190 + 2 NA Intergenic HERVL18-int|LTR|ERVL -12588 NM_001366235 148581 Hs.388746 NM_152489 ENSG00000177414 UBE2U - ubiquitin conjugating enzyme E2 U protein-coding 394-143 chr18 9763761 9764110 + 2 NA intron (NM_006868, intron 1 of 6) intron (NM_006868, intron 1 of 6) 55634 NM_006868 11031 Hs.99528 NM_006868 ENSG00000168461 RAB31 Rab22B RAB31, member RAS oncogene family protein-coding 478-9 chr1 93742893 93743274 + 2 NA intron (NM_001261408, intron 2 of 13) intron (NM_001261408, intron 2 of 13) 32300 NR_148965 723788 Hs.659312 NR_148965 ENSG00000137936 MIG7 - mig-7 ncRNA 360-494 chr9 114964403 114964735 + 2 NA Intergenic L1ME5|LINE|L1 -33974 NM_001252290 944 Hs.494901 NM_001244 ENSG00000106952 TNFSF8 CD153|CD30L|CD30LG|TNLG3A TNF superfamily member 8 protein-coding 537-223 chr6 149906887 149907341 + 2 NA intron (NR_045127, intron 2 of 2) intron (NR_045127, intron 2 of 2) -11055 NM_001243328 135250 Hs.511818 NM_139165 ENSG00000164520 RAET1E LETAL|N2DL-4|NKG2DL4|RAET1E2|RL-4|ULBP4|bA350J20.7 retinoic acid early transcript 1E protein-coding 337-480 chr6 40244281 40244589 + 2 NA Intergenic Intergenic 111571 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 225-315 chr6 170040921 170041113 + 2 NA Intergenic MER4E|LTR|ERV1 78394 NR_027434 100131532 Hs.703417 NR_027434 LOC100131532 - uncharacterized LOC100131532 ncRNA 365-82 chr11 119632984 119633274 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 96071 NM_002855 5818 Hs.334846 NM_002855 ENSG00000110400 NECTIN1 CD111|CLPED1|ED4|HIgR|HV1S|HVEC|OFC7|PRR|PRR1|PVRL1|PVRR|PVRR1|SK-12|nectin-1 nectin cell adhesion molecule 1 protein-coding 352-498 chr7 51101280 51101570 + 2 NA intron (NM_015198, intron 6 of 12) MIRb|SINE|MIR 215384 NM_001346441 23242 Hs.99141 NM_015198 ENSG00000106078 COBL - cordon-bleu WH2 repeat protein protein-coding 199-22 chr10 58124061 58124200 + 2 NA Intergenic L1MCa|LINE|L1 143764 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 329-98 chr11 81667429 81667651 + 2 NA Intergenic L1ME1|LINE|L1 223296 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 291-52 chr10 62822593 62822833 + 2 NA Intergenic MIR|SINE|MIR -3546 NM_001136178 1959 Hs.1395 NM_000399 ENSG00000122877 EGR2 AT591|CHN1|CMT1D|CMT4E|KROX20 early growth response 2 protein-coding 297-304 chr3 147030579 147030829 + 2 NA Intergenic Intergenic 108781 NR_135561 101927866 Hs.586116 NR_135560 ENSG00000242671 LINC02010 - long intergenic non-protein coding RNA 2010 ncRNA 418 chr1 25156091 25156351 + 2 NA Intergenic L1ME3E|LINE|L1 76281 NM_207170 25949 Hs.20013 NM_015484 ENSG00000117614 SYF2 CBPIN|NTC31|P29|fSAP29 SYF2 pre-mRNA splicing factor protein-coding 275-355 chr8 35997962 35998122 + 2 NA Intergenic L1M1|LINE|L1 -287722 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 186-75 chr2 33063559 33063729 + 2 NA intron (NM_206943, intron 3 of 33) Charlie1b|DNA|hAT-Charlie -70953 NM_001166265 4052 Hs.619315 NM_000627 ENSG00000049323 LTBP1 - latent transforming growth factor beta binding protein 1 protein-coding 240-174 chr17 15296248 15296473 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -31034 NM_001330143 5376 Hs.372031 NM_000304 ENSG00000109099 PMP22 CIDP|CMT1A|CMT1E|DSS|GAS-3|GAS3|HMSNIA|HNPP|Sp110 peripheral myelin protein 22 protein-coding 470-28 chr10 77337854 77338238 + 2 NA intron (NM_001322838, intron 1 of 29) MLT1I|LTR|ERVL-MaLR 12715 NM_001322838 3778 Hs.144795 NM_002247 ENSG00000156113 KCNMA1 BKTM|CADEDS|KCa1.1|MaxiK|PNKD3|SAKCA|SLO|SLO-ALPHA|SLO1|bA205K10.1|hSlo|mSLO1 potassium calcium-activated channel subfamily M alpha 1 protein-coding 261-139 chr17 34100889 34101106 + 2 NA intron (NM_001094, intron 1 of 9) MIR|SINE|MIR 55809 NM_001094 40 Hs.368417 NM_001094 ENSG00000108684 ASIC2 ACCN|ACCN1|ASIC2a|BNC1|BNaC1|MDEG|hBNaC1 acid sensing ion channel subunit 2 protein-coding 568-61 chr15 60176586 60176939 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 172451 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 333-462 chr5 96374315 96374616 + 2 NA intron (NR_130776, intron 3 of 4) intron (NR_130776, intron 3 of 4) 57694 NM_001177875 5122 Hs.78977 NM_000439 ENSG00000175426 PCSK1 BMIQ12|NEC1|PC1|PC3|SPC3 proprotein convertase subtilisin/kexin type 1 protein-coding 557-196 chr8 81164704 81165037 + 2 NA Intergenic Intergenic -52802 NM_018440 55824 Hs.266175 NM_018440 ENSG00000076641 PAG1 CBP|PAG phosphoprotein membrane anchor with glycosphingolipid microdomains 1 protein-coding 160-94 chr6 47883983 47884121 + 2 NA intron (NM_001013732, intron 2 of 2) L1ME4a|LINE|L1 96984 NR_033806 221391 Hs.213717 NM_181744 ENSG00000124818 OPN5 GPR136|GRP136|PGR12|TMEM13 opsin 5 protein-coding 372-115 chr12 69617127 69617398 + 2 NA Intergenic MER21A|LTR|ERVL -6355 NM_201550 376132 Hs.448708 NM_201550 ENSG00000198812 LRRC10 HRLRRP|LRRC10A leucine rich repeat containing 10 protein-coding 183-61 chr17 13831519 13831661 + 2 NA Intergenic Intergenic -192908 NR_003261 94158 Hs.633073 NR_003261 CDRT15P1 CDRT15P CMT1A duplicated region transcript 15 pseudogene 1 pseudo 362-136 chr13 92986777 92987100 + 2 NA Intergenic AluSq2|SINE|Alu -58403 NR_126360 104326053 Hs.578064 NR_126360 LINC00363 TCONS_00021586 long intergenic non-protein coding RNA 363 ncRNA 354-203 chr2 21888286 21888473 + 2 NA Intergenic Intergenic -177727 NR_038837 645949 Hs.456782 NR_038837 ENSG00000229621 LINC01822 - long intergenic non-protein coding RNA 1822 ncRNA 186-166 chr8 124020708 124020887 + 2 NA intron (NM_001039112, intron 16 of 40) MIR|SINE|MIR 19985 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 236-116 chr14 62466870 62467050 + 2 NA Intergenic Intergenic -326987 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 343-105 chr12 65487211 65487463 + 2 NA intron (NR_120431, intron 3 of 3) L1ME3A|LINE|L1 69974 NR_135033 105369187 Hs.738044 NR_135033 ENSG00000250748 LOC105369187 - uncharacterized LOC105369187 ncRNA 326-178 chr15 86331266 86331523 + 2 NA intron (NM_152336, intron 17 of 24) L1PA15-16|LINE|L1 -14426 NR_046012 727915 Hs.451281 NR_046012 ENSG00000260125 AGBL1-AS1 - AGBL1 antisense RNA 1 ncRNA 320-561 chr8 107726079 107726267 + 2 NA Intergenic MER21C|LTR|ERVL -228255 NM_001199859 284 Hs.369675 NM_001146 ENSG00000154188 ANGPT1 AGP1|AGPT|ANG1 angiopoietin 1 protein-coding 430-181 chr22 33542559 33542950 + 2 NA intron (NM_133642, intron 6 of 14) intron (NM_133642, intron 6 of 14) -106085 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 415-93 chr17 13087821 13088144 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -69918 NM_001165962 60528 Hs.434232 NM_018127 ENSG00000006744 ELAC2 COXPD17|ELC2|HPC2 elaC ribonuclease Z 2 protein-coding 227-72 chr11 104094989 104095142 + 2 NA intron (NM_025208, intron 1 of 6) L2b|LINE|L2 58425 NM_001001711 414301 Hs.591941 NM_001001711 ENSG00000170967 DDI1 - DNA damage inducible 1 homolog 1 protein-coding 341-62 chr10 56417179 56417454 + 2 NA Intergenic L2b|LINE|L2 -56043 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 403-230 chr4 125614162 125614413 + 2 NA Intergenic Intergenic 107028 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 193-8 chr1 73778736 73778888 + 2 NA Intergenic Intergenic 104133 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 239-189 chr2 140314073 140314218 + 2 NA intron (NM_018557, intron 83 of 90) intron (NM_018557, intron 83 of 90) 272540 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 138-87 chr8 21530608 21530693 + 2 NA Intergenic MER33|DNA|hAT-Charlie 232411 NR_104677 101929172 Hs.128668 NR_104677 ENSG00000254334 LOC101929172 - uncharacterized LOC101929172 ncRNA 349-343 chr3 147880588 147880889 + 2 NA Intergenic MER52-int|LTR|ERV1 -197421 NR_134937 100507461 Hs.112623 NR_134937 ENSG00000241131 LINC02032 - long intergenic non-protein coding RNA 2032 ncRNA 304-515 chr8 84061873 84062044 + 2 NA Intergenic L1MA2|LINE|L1 -120829 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 183-3 chr1 118821785 118821923 + 2 NA Intergenic Intergenic 166489 NM_001330677 6913 Hs.146196 NM_152380 ENSG00000092607 TBX15 TBX14 T-box transcription factor 15 protein-coding 212-345 chr9 38174124 38174308 + 2 NA Intergenic Intergenic -104989 NM_003028 6461 Hs.521482 NM_003028 ENSG00000107338 SHB bA3J10.2 SH2 domain containing adaptor protein B protein-coding 459-198 chr3 164286970 164287288 + 2 NA Intergenic Intergenic -115573 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 225-120 chr16 78489946 78490119 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 390378 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 388-8 chr1 78595064 78595390 + 2 NA Intergenic (AAT)n|Simple_repeat|Simple_repeat -25221 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 570-154 chr5 25421941 25422425 + 2 NA Intergenic Intergenic 231230 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 476-6 chr1 90680242 90680686 + 2 NA Intergenic LTR16A|LTR|ERVL 22714 NR_145742 109616984 NR_145742 ENSG00000199666 SNORD3G - small nucleolar RNA, C/D box 3G snoRNA 372-369 chr4 93902881 93903111 + 2 NA Intergenic Intergenic 74243 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 191-102 chr2 117063148 117063276 + 2 NA Intergenic Intergenic -751479 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 179-95 chr5 54174568 54174710 + 2 NA intron (NM_019087, intron 1 of 4) intron (NM_019087, intron 1 of 4) 135934 NM_019087 54622 Hs.659125 NM_019087 ENSG00000185305 ARL15 ARFRP2 ADP ribosylation factor like GTPase 15 protein-coding 305-402 chr4 111892362 111892637 + 2 NA Intergenic L1MEg|LINE|L1 -252955 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 503-203 chr3 131176828 131177271 + 2 NA intron (NM_001353043, intron 14 of 17) intron (NM_001353043, intron 14 of 17) 149321 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 480-8 chr1 76782856 76783288 + 2 NA Intergenic Intergenic -3805 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 509-165 chr3 190433502 190433873 + 2 NA intron (NM_207316, intron 4 of 4) intron (NM_207316, intron 4 of 4) 16189 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 755-16 chr11 42297435 42297996 + 2 NA Intergenic Intergenic -44025 NR_038309 100507205 Hs.99310 NR_038309 LINC02740 - long intergenic non-protein coding RNA 2740 ncRNA 349-397 chr5 2497592 2497776 + 2 NA Intergenic Intergenic -185483 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 375-372 chr7 35559337 35559687 + 2 NA Intergenic Intergenic 135623 NM_022373 64224 Hs.643051 NM_022373 ENSG00000122557 HERPUD2 - HERPUD family member 2 protein-coding 374-237 chr22 47990408 47990664 + 2 NA Intergenic MIRb|SINE|MIR -283828 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 219-287 chr5 72680054 72680234 + 2 NA Intergenic L1MA4A|LINE|L1 -19475 NR_105007 102477328 Hs.254516 NR_105007 ENSG00000248371 LINC02056 - long intergenic non-protein coding RNA 2056 ncRNA 533-65 chr15 90760215 90760687 + 2 NA intron (NM_001287246, intron 7 of 22) intron (NM_001287246, intron 7 of 22) 43105 NM_001287247 641 Hs.725208 NM_000057 ENSG00000197299 BLM BS|MGRISCE1|RECQ2|RECQL2|RECQL3 BLM RecQ like helicase protein-coding 130-87 chr9 28851751 28851857 + 2 NA intron (NM_001354574, intron 2 of 5) intron (NM_001354574, intron 2 of 5) 11902 NR_030597 100126310 NR_030597 ENSG00000215966 MIR876 MIRN876|hsa-mir-876|mir-876 microRNA 876 ncRNA 353-232 chr2 12843126 12843394 + 2 NA Intergenic L1MC3|LINE|L1 105893 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 540-136 chr22 33324951 33325254 + 2 NA intron (NM_133642, intron 10 of 14) MIRb|SINE|MIR 111567 NR_039921 100616295 NR_039921 ENSG00000266012 MIR4764 - microRNA 4764 ncRNA 335-411 chr5 12636823 12637153 + 2 NA intron (NR_033383, intron 2 of 3) L2|LINE|L2 -30871 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 236-125 chr15 42070442 42070603 + 2 NA intron (NM_178034, intron 18 of 19) intron (NM_178034, intron 18 of 19) -19819 NM_001206670 123745 Hs.668060 NM_001080490 ENSG00000188089 PLA2G4E - phospholipase A2 group IVE protein-coding 483-212 chr5 97334421 97334662 + 2 NA Intergenic L1PA7|LINE|L1 -151294 NM_018343 55781 Hs.27021 NM_018343 ENSG00000058729 RIOK2 RIO2 RIO kinase 2 protein-coding 358-322 chr4 28033261 28033458 + 2 NA Intergenic L1MA2|LINE|L1 -786223 NR_036237 100422937 NR_036237 ENSG00000283275 MIR4275 - microRNA 4275 ncRNA 440-52 chr12 118604008 118604316 + 2 NA Intergenic MIRb|SINE|MIR 157517 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 349-69 chr10 76751539 76751770 + 2 NA Intergenic L1MD3|LINE|L1 -136390 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 566-22 chr11 47553888 47554351 + 2 NA promoter-TSS (NM_006560) promoter-TSS (NM_006560) -987 NM_006560 10658 Hs.595333 NM_006560 ENSG00000149187 CELF1 BRUNOL2|CUG-BP|CUGBP|CUGBP1|EDEN-BP|NAB50|NAPOR|hNab50 CUGBP Elav-like family member 1 protein-coding 447-134 chr2 137669512 137669772 + 2 NA intron (NM_001316349, intron 27 of 27) intron (NM_001316349, intron 27 of 27) 258290 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 314-162 chr14 38318149 38318356 + 2 NA Intergenic L1MA6|LINE|L1 -62159 NM_175060 161198 Hs.525307 NM_175060 ENSG00000176435 CLEC14A C14orf27|CEG1|EGFR-5 C-type lectin domain containing 14A protein-coding 750-43 chr20 39782248 39782794 + 2 NA Intergenic L1M5|LINE|L1 -221940 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 504-245 chr7 98577246 98577589 + 2 NA Intergenic AluSx1|SINE|Alu -39868 NM_002523 4885 Hs.3281 NM_002523 ENSG00000106236 NPTX2 NARP|NP-II|NP2 neuronal pentraxin 2 protein-coding 229-210 chr2 179785181 179785376 + 2 NA intron (NR_148056, intron 1 of 9) L1ME3A|LINE|L1 -38768 NM_001352815 151126 Hs.655005 NM_152520 ENSG00000144331 ZNF385B ZNF533 zinc finger protein 385B protein-coding 201-119 chr2 61730391 61730534 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 123598 NM_001201543 84140 Hs.440466 NM_032180 ENSG00000170264 FAM161A RP28 FAM161 centrosomal protein A protein-coding 585-31 chr12 103967477 103968048 + 2 NA intron (NM_001363612, intron 1 of 8) L3|LINE|CR1 1890 NM_003211 6996 Hs.584809 NM_003211 ENSG00000139372 TDG hTDG thymine DNA glycosylase protein-coding 441-240 chr7 14780075 14780500 + 2 NA intron (NM_001350717, intron 2 of 24) intron (NM_001350717, intron 2 of 24) 61163 NM_145695 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 352-404 chr5 23733930 23734229 + 2 NA Intergenic Intergenic -217269 NR_131245 439936 Hs.638078 NR_131245 ENSG00000248874 C5orf17 - chromosome 5 open reading frame 17 (putative) ncRNA 246-42 chr10 49020991 49021179 + 2 NA intron (NM_001031746, intron 7 of 7) L1M5|LINE|L1 -35498 NR_036182 100422895 NR_036182 ENSG00000264800 MIR4294 - microRNA 4294 ncRNA 454-260 chr5 64121378 64121729 + 2 NA Intergenic MIR3|SINE|MIR -44290 NM_001113561 285671 Hs.657843 NM_178532 ENSG00000164197 RNF180 RINES ring finger protein 180 protein-coding 370-216 chr2 14596063 14596278 + 2 NA Intergenic Intergenic -36547 NM_001369364 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 224-107 chr16 59820023 59820204 + 2 NA Intergenic L1MA8|LINE|L1 -35240 NR_110917 101927580 Hs.552235 NR_110917 ENSG00000261807 LINC02141 - long intergenic non-protein coding RNA 2141 ncRNA 490-130 chr19 56926787 56927122 + 2 NA Intergenic Intergenic 86052 NR_024059 100073347 Hs.467337 NR_024059 ENSG00000268654 MIMT1 LINC00067|MIM1|NCRNA00067 MER1 repeat containing imprinted transcript 1 ncRNA 187-137 chr5 53319869 53320054 + 2 NA Intergenic Intergenic -160668 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 383-353 chr7 37824188 37824538 + 2 NA Intergenic Intergenic -24234 NM_016616 51314 Hs.723454 NM_016616 ENSG00000086288 NME8 CILD6|HEL-S-99|NM23-H8|SPTRX2|TXNDC3|sptrx-2 NME/NM23 family member 8 protein-coding 118-46 chr6 54830479 54830568 + 2 NA Intergenic Intergenic -16248 NM_001010872 222584 Hs.152423 NM_001010872 ENSG00000168143 FAM83B C6orf143 family with sequence similarity 83 member B protein-coding 299-281 chr3 77581191 77581410 + 2 NA intron (NM_001290039, intron 17 of 26) L1ME2|LINE|L1 467663 NR_146636 105377172 NR_146636 LINC02077 - long intergenic non-protein coding RNA 2077 ncRNA 248-34 chr10 44708418 44708590 + 2 NA Intergenic MIRb|SINE|MIR -202812 NM_001345926 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 322-547 chr8 129931125 129931333 + 2 NA intron (NM_001353256, intron 2 of 13) intron (NM_001353256, intron 2 of 13) 8582 NM_016623 51571 Hs.126941 NM_016623 ENSG00000153310 FAM49B BM-009|L1 family with sequence similarity 49 member B protein-coding 790-48 chr7 17581192 17581681 + 2 NA Intergenic Intergenic -22527 NR_110013 101927630 Hs.583400 NR_110013 ENSG00000236039 LOC101927630 - uncharacterized LOC101927630 ncRNA 269-422 chr9 29884583 29884766 + 2 NA Intergenic Intergenic 523780 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 535-60 chr12 112592261 112592600 + 2 NA intron (NM_001347952, intron 1 of 21) AluSx|SINE|Alu 17194 NM_001347952 22895 Hs.21239 NM_014954 ENSG00000089169 RPH3A - rabphilin 3A protein-coding 213-280 chr8 91651451 91651623 + 2 NA Intergenic L1M7|LINE|L1 366143 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 319-84 chr11 4551920 4552158 + 2 NA Intergenic HUERS-P2-int|LTR|ERV1 6848 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 201-171 chr4 41703556 41703693 + 2 NA Intergenic Intergenic 45346 NM_003924 8929 Hs.87202 NM_003924 ENSG00000109132 PHOX2B CCHS|NBLST2|NBPhox|PMX2B paired like homeobox 2B protein-coding 513-45 chr11 74504218 74504700 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -10735 NM_001144869 387787 Hs.591971 NM_001144869 ENSG00000175536 LIPT2 - lipoyl(octanoyl) transferase 2 protein-coding 184-5 chr1 39874649 39874781 + 2 NA intron (NM_017646, intron 1 of 10) AluSp|SINE|Alu 8789 NM_017646 54802 Hs.356554 NM_017646 ENSG00000043514 TRIT1 COXPD35|GRO1|IPPT|IPT|IPTase|MOD5|hGRO1 tRNA isopentenyltransferase 1 protein-coding 268-415 chr8 123972280 123972439 + 2 NA intron (NM_001039112, intron 6 of 40) L2b|LINE|L2 68423 NR_040044 439941 Hs.683919 NM_001038706 ENSG00000181171 FER1L6-AS1 C8orf54 FER1L6 antisense RNA 1 ncRNA 258-340 chr6 33814324 33814564 + 2 NA Intergenic Intergenic -10441 NM_001040109 4295 Hs.2813 NM_002418 ENSG00000096395 MLN - motilin protein-coding 267-336 chr5 87930917 87931163 + 2 NA Intergenic L1PA16|LINE|L1 268998 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 420-22 chr1 207934106 207934470 + 2 NA Intergenic Intergenic -23163 NM_001025109 947 Hs.374990 NM_001773 ENSG00000174059 CD34 - CD34 molecule protein-coding 301-195 chr2 30654984 30655230 + 2 NA Intergenic Intergenic 152339 NM_144575 92291 Hs.660911 NM_144575 ENSG00000162949 CAPN13 - calpain 13 protein-coding 304-280 chr2 165581389 165581568 + 2 NA intron (NM_024969, intron 1 of 4) intron (NM_024969, intron 1 of 4) 9142 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 209-126 chr17 59773509 59773708 + 2 NA intron (NM_001329400, intron 4 of 9) intron (NM_001329400, intron 4 of 9) 65954 NM_001329400 81671 Hs.444569 NM_030938 ENSG00000062716 VMP1 EPG3|TANGO5|TMEM49 vacuole membrane protein 1 protein-coding 295-354 chr4 98189949 98190146 + 2 NA Intergenic L1ME3|LINE|L1 -46571 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 379-303 chr6 144990361 144990659 + 2 NA Intergenic L2b|LINE|L2 584855 NR_132778 106635530 NR_132778 SNORA98 - small nucleolar RNA, H/ACA box 98 snoRNA 251-176 chr2 89829195 89829414 + 2 NA Intergenic (ATTCC)n|Simple_repeat|Simple_repeat -191397 NR_136329 101927050 Hs.578075 NR_136329 LOC101927050 - lysine methyltransferase 2C pseudogene pseudo 261-31 chr10 30996044 30996205 + 2 NA intron (NM_001143766, intron 1 of 7) L1M4b|LINE|L1 3393 NM_001143769 220929 Hs.660642 NM_182755 ENSG00000183621 ZNF438 bA330O11.1 zinc finger protein 438 protein-coding 1004-19 chr8 99980409 99981073 + 2 NA intron (NM_015668, intron 22 of 27) intron (NM_015668, intron 22 of 27) -23841 NR_145741 109616982 NR_145741 ENSG00000212414 SNORD77B - small nucleolar RNA, C/D box 77B snoRNA 307-366 chr5 5642489 5642701 + 2 NA Intergenic FRAM|SINE|Alu 219918 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 281-118 chr14 62220786 62221057 + 2 NA Intergenic L1PA16|LINE|L1 -80948 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 397-128 chr18 56064016 56064343 + 2 NA intron (NR_148972, intron 3 of 8) intron (NR_148972, intron 3 of 8) 21901 NR_146510 102724698 NR_146510 ENSG00000267057 LINC01905 - long intergenic non-protein coding RNA 1905 ncRNA 412-248 chr5 13846552 13846849 + 2 NA intron (NM_001369, intron 31 of 78) intron (NM_001369, intron 31 of 78) 97780 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 370-331 chr4 33582490 33582708 + 2 NA Intergenic L1MEd|LINE|L1 457294 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 337-56 chr10 76573621 76573816 + 2 NA Intergenic HAL1ME|LINE|L1 -314326 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 294-281 chr3 4201497 4201718 + 2 NA Intergenic L1MA3|LINE|L1 -101697 NM_001320678 6419 Hs.475300 NM_006515 ENSG00000170364 SETMAR METNASE|Mar1 SET domain and mariner transposase fusion gene protein-coding 235-352 chr8 68323748 68323930 + 2 NA intron (NR_038877, intron 1 of 2) MIRb|SINE|MIR -6534 NR_146187 116328 Hs.491941 NM_052958 ENSG00000165084 C8orf34 VEST-1|VEST1 chromosome 8 open reading frame 34 protein-coding 250-433 chr8 101690601 101690804 + 2 NA intron (NM_001040624, intron 7 of 7) intron (NM_001040624, intron 7 of 7) 100267 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 229-13 chr1 107564883 107565038 + 2 NA Intergenic MIR|SINE|MIR 123539 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 151-54 chr3 44192422 44192541 + 2 NA Intergenic L1MEf|LINE|L1 -49405 NM_001145030 375337 Hs.132125 NM_001145030 ENSG00000173769 TOPAZ1 C3orf77 testis and ovary specific PAZ domain containing 1 protein-coding 269-68 chr11 81263734 81263931 + 2 NA Intergenic Intergenic -501029 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 330-410 chr5 32187678 32187859 + 2 NA Intergenic L1M3|LINE|L1 -13449 NM_022130 64083 Hs.408909 NM_022130 ENSG00000113384 GOLPH3 GOPP1|GPP34|MIDAS|Vps74 golgi phosphoprotein 3 protein-coding 422-264 chr6 97296932 97297171 + 2 NA Intergenic AluSx|SINE|Alu -8535 NR_110757 101927314 Hs.520283 NR_110757 ENSG00000271860 LOC101927314 - uncharacterized LOC101927314 ncRNA 379-205 chr22 26214192 26214534 + 2 NA intron (NM_001184776, intron 1 of 14) MIR|SINE|MIR 44889 NM_001184775 23544 Hs.194766 NM_021115 ENSG00000100095 SEZ6L - seizure related 6 homolog like protein-coding 825-46 chr7 31878811 31879529 + 2 NA exon (NM_001322058, exon 5 of 18) exon (NM_001322058, exon 5 of 18) 191237 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 549-73 chr16 62689315 62689692 + 2 NA Intergenic L1MA6|LINE|L1 -653065 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 298-475 chr8 126161806 126162044 + 2 NA Intergenic Intergenic -163570 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 251-148 chr19 40337466 40337697 + 2 NA intron (NM_001256440, intron 2 of 8) MER104|DNA|TcMar-Tc2 10816 NR_046202 126526 Hs.631557 NM_178830 ENSG00000160392 C19orf47 - chromosome 19 open reading frame 47 protein-coding 343-211 chr19 13350461 13350745 + 2 NA intron (NM_023035, intron 6 of 46) Charlie4a|DNA|hAT-Charlie 155857 NM_001127221 773 Hs.501632 NM_000068 ENSG00000141837 CACNA1A APCA|BI|CACNL1A4|CAV2.1|EA2|EIEE42|FHM|HPCA|MHP|MHP1|SCA6 calcium voltage-gated channel subunit alpha1 A protein-coding 172-108 chr5 146807331 146807441 + 2 NA intron (NM_001271899, intron 2 of 9) intron (NM_001271899, intron 2 of 9) 71399 NM_181675 5521 Hs.627618 NM_181674 ENSG00000156475 PPP2R2B B55BETA|PP2AB55BETA|PP2ABBETA|PP2APR55B|PP2APR55BETA|PR2AB55BETA|PR2ABBETA|PR2APR55BETA|PR52B|PR55-BETA|PR55BETA|SCA12 protein phosphatase 2 regulatory subunit Bbeta protein-coding 213-139 chr2 62709818 62709962 + 2 NA intron (NM_001142615, intron 2 of 22) intron (NM_001142615, intron 2 of 22) 2993 NM_001354217 23301 Hs.271667 NM_015252 ENSG00000115504 EHBP1 HPC12|NACSIN EH domain binding protein 1 protein-coding 393-286 chr5 121562529 121562755 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 240092 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 436-205 chr4 46906559 46906970 + 2 NA intron (NM_130902, intron 1 of 2) intron (NM_130902, intron 1 of 2) 2481 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 202-117 chr2 51932642 51932837 + 2 NA intron (NR_135237, intron 7 of 10) intron (NR_135237, intron 7 of 10) -437909 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 191-185 chr6 48021021 48021165 + 2 NA intron (NM_207499, intron 1 of 2) intron (NM_207499, intron 1 of 2) 47596 NM_001013732 442213 Hs.659409 NM_207499 ENSG00000244694 PTCHD4 C6orf138|PTCH53|dJ402H5.2 patched domain containing 4 protein-coding 362-17 chr1 85502866 85503216 + 2 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) -37882 NM_012137 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 324-554 chr8 135775260 135775576 + 2 NA Intergenic Intergenic 317962 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 204-309 chr9 105993013 105993194 + 2 NA Intergenic Intergenic 298562 NM_018112 55151 Hs.411925 NM_018112 ENSG00000095209 TMEM38B C9orf87|D4Ertd89e|OI14|TRIC-B|TRICB|bA219P18.1 transmembrane protein 38B protein-coding 473-238 chr6 36409983 36410285 + 2 NA intron (NM_152990, intron 3 of 4) GA-rich|Low_complexity|Low_complexity -22334 NM_001207036 51513 Hs.272398 NM_016135 ENSG00000010030 ETV7 TEL-2|TEL2|TELB ETS variant 7 protein-coding 205-213 chr4 155687853 155688030 + 2 NA intron (NM_000856, intron 3 of 10) intron (NM_000856, intron 3 of 10) 20279 NM_001130684 2982 Hs.24258 NM_000856 ENSG00000164116 GUCY1A1 GC-SA3|GUC1A3|GUCA3|GUCSA3|GUCY1A3|MYMY6 guanylate cyclase 1 soluble subunit alpha 1 protein-coding 646-40 chr15 75083075 75083465 + 2 NA Intergenic L1MB7|LINE|L1 39984 NM_001301105 60490 Hs.458922 NM_021823 ENSG00000138621 PPCDC MDS018|PPC-DC|coaC phosphopantothenoylcysteine decarboxylase protein-coding 323-81 chr11 39348318 39348608 + 2 NA Intergenic Intergenic 699605 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 180-93 chr20 7641973 7642143 + 2 NA Intergenic L1MC4|LINE|L1 270450 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 505-187 chr3 1741542 1741947 + 2 NA Intergenic Intergenic -357059 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 435-229 chr7 84041026 84041400 + 2 NA intron (NM_006080, intron 6 of 16) intron (NM_006080, intron 6 of 16) 153576 NM_006080 10371 Hs.252451 NM_006080 ENSG00000075213 SEMA3A COLL1|HH16|Hsema-I|Hsema-III|SEMA1|SEMAD|SEMAIII|SEMAL|SemD|coll-1 semaphorin 3A protein-coding 515-46 chr11 96898907 96899354 + 2 NA Intergenic L1MC3|LINE|L1 390705 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 320-222 chr18 32006935 32007193 + 2 NA Intergenic AluSx1|SINE|Alu -11761 NM_017831 54941 Hs.633703 NM_017831 ENSG00000101695 RNF125 TNORS|TRAC-1|TRAC1 ring finger protein 125 protein-coding 229-21 chr1 213213003 213213155 + 2 NA intron (NM_001349662, intron 9 of 15) L1MC1|LINE|L1 161838 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 318-414 chr4 146523807 146524117 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -1991 NM_032128 84068 Hs.659209 NM_032128 ENSG00000120519 SLC10A7 C4orf13|P7|SSASKS solute carrier family 10 member 7 protein-coding 348-217 chr2 23337567 23337868 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -47462 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 287-116 chr12 83417130 83417365 + 2 NA Intergenic Intergenic 730092 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 360-94 chr12 75795845 75796113 + 2 NA Intergenic Intergenic 235797 NM_007350 22822 Hs.602085 NM_007350 ENSG00000139289 PHLDA1 DT1P1B11|PHRIP|TDAG51 pleckstrin homology like domain family A member 1 protein-coding 397-214 chr3 191843700 191843965 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 382669 NM_001083308 152138 Hs.690618 NM_001083308 ENSG00000253548 PYDC2 POP2|cPOP2 pyrin domain containing 2 protein-coding 587-87 chr20 42995240 42995676 + 2 NA intron (NM_133170, intron 1 of 31) intron (NM_133170, intron 1 of 31) 26715 NR_149017 101927138 Hs.666740 NR_149017 ENSG00000227599 LOC101927138 - uncharacterized LOC101927138 ncRNA 269-115 chr14 51332384 51332533 + 2 NA promoter-TSS (NR_038358) promoter-TSS (NR_038358) -935 NR_038358 283553 Hs.325752 NR_038358 ENSG00000258479 LINC00640 - long intergenic non-protein coding RNA 640 ncRNA 375-381 chr7 53310154 53310466 + 2 NA Intergenic LTR78|LTR|ERV1 274677 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 306-275 chr20 16141541 16141814 + 2 NA Intergenic Intergenic -155795 NR_130924 613266 Hs.309149 NR_130924 LOC613266 - uncharacterized LOC613266 ncRNA 402-9 chr1 85692689 85692971 + 2 NA intron (NM_017953, intron 5 of 9) intron (NM_017953, intron 5 of 9) 15603 NM_001170670 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 251-66 chr12 48721852 48722010 + 2 NA Intergenic AluSp|SINE|Alu -5224 NM_001277842 904 Hs.92308 NM_001240 ENSG00000129315 CCNT1 CCNT|CYCT1|HIVE1 cyclin T1 protein-coding 236-10 chr1 67227807 67227989 + 2 NA intron (NM_144701, intron 7 of 10) intron (NM_144701, intron 7 of 10) 61444 NM_144701 149233 Hs.677426 NM_144701 ENSG00000162594 IL23R - interleukin 23 receptor protein-coding 425-225 chr5 25835868 25836114 + 2 NA Intergenic L1M5|LINE|L1 645038 NR_136209 105374693 Hs.628714 NR_136209 LINC02211 - long intergenic non-protein coding RNA 2211 ncRNA 512-204 chr5 2346846 2347187 + 2 NA Intergenic L1PREC2|LINE|L1 -34815 NR_104616 100506858 Hs.445071 NR_104616 LOC100506858 - uncharacterized LOC100506858 ncRNA 294-18 chr1 180450095 180450260 + 2 NA intron (NM_032360, intron 3 of 7) L3|LINE|CR1 -11787 NR_036067 100423032 NR_036067 ENSG00000265435 MIR3121 mir-3121 microRNA 3121 ncRNA 479-23 chr10 51155014 51155427 + 2 NA intron (NM_001098512, intron 2 of 17) intron (NM_001098512, intron 2 of 17) 80733 NM_006258 5592 Hs.407535 NM_006258 ENSG00000185532 PRKG1 AAT8|PKG|PKG1|PRKG1B|PRKGR1B|cGK|cGK 1|cGK1|cGKI|cGKI-BETA|cGKI-alpha protein kinase cGMP-dependent 1 protein-coding 317-324 chr3 187529479 187529728 + 2 NA Intergenic Intergenic 82557 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 341-490 chr7 37006816 37007122 + 2 NA intron (NR_104120, intron 2 of 2) intron (NR_104120, intron 2 of 2) 9173 NR_104120 100861514 Hs.627775 NR_104120 ENSG00000224101 ELMO1-AS1 - ELMO1 antisense RNA 1 ncRNA 284-151 chr16 73819257 73819422 + 2 NA Intergenic MER20|DNA|hAT-Charlie 396182 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 617-35 chr14 63113064 63113494 + 2 NA Intergenic Intergenic -67821 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 220-272 chr5 11113942 11114112 + 2 NA intron (NM_001288715, intron 12 of 20) intron (NM_001288715, intron 12 of 20) -352793 NM_004394 1611 Hs.75189 NM_004394 ENSG00000112977 DAP - death associated protein protein-coding 301-488 chr9 106330492 106330749 + 2 NA Intergenic Intergenic -270308 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 362-101 chr11 115020215 115020459 + 2 NA Intergenic L1ME3|LINE|L1 -313240 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 256-327 chr5 102732758 102732986 + 2 NA Intergenic Intergenic -21911 NM_001319943 5066 Hs.369430 NM_000919 ENSG00000145730 PAM PAL|PHM peptidylglycine alpha-amidating monooxygenase protein-coding 301-140 chr15 100844409 100844579 + 2 NA Intergenic MARNA|DNA|TcMar-Mariner -5258 NR_160703 105369201 Hs.612155 NR_160702 ENSG00000272808 LOC105369201 - uncharacterized LOC105369201 ncRNA 350-516 chr8 88889083 88889343 + 2 NA Intergenic Intergenic -561730 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 286-342 chr5 17147707 17147900 + 2 NA intron (NR_027253, intron 2 of 2) intron (NR_027253, intron 2 of 2) 8189 NR_162112 113218490 NR_162112 MIR10522 - microRNA 10522 ncRNA 559-185 chr8 101220492 101220877 + 2 NA Intergenic L1MA5|LINE|L1 -14620 NM_001267709 51123 Hs.374485 NM_016096 ENSG00000120963 ZNF706 HSPC038|PNAS-106|PNAS-113 zinc finger protein 706 protein-coding 366-456 chr8 135692041 135692382 + 2 NA Intergenic Intergenic 234755 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 288-190 chr2 62187940 62188134 + 2 NA Intergenic Intergenic -8078 NM_006577 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 263-389 chr7 30559160 30559381 + 2 NA intron (NR_038889, intron 5 of 6) AluJb|SINE|Alu 18509 NR_038889 401320 Hs.561708 NR_038889 GARS-DT - GARS divergent transcript ncRNA 239-235 chr3 40152549 40152756 + 2 NA intron (NM_001284424, intron 4 of 15) L2b|LINE|L2 52641 NM_001284426 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 261-210 chr20 5354906 5355115 + 2 NA Intergenic Intergenic -38278 NM_144773 128674 Hs.375029 NM_144773 ENSG00000101292 PROKR2 GPR73L1|GPR73b|GPRg2|HH3|KAL3|PKR2|dJ680N4.3 prokineticin receptor 2 protein-coding 438-28 chr10 37890939 37891271 + 2 NA Intergenic L1ME3Cz|LINE|L1 -33002 NM_001352477 57209 Hs.528423 NM_021045 ENSG00000198105 ZNF248 bA162G10.3 zinc finger protein 248 protein-coding 223-133 chr19 12194366 12194534 + 2 NA promoter-TSS (NR_104179) promoter-TSS (NR_104179) -565 NR_104179 100289333 Hs.662603 NR_104179 LOC100289333 - uncharacterized LOC100289333 ncRNA 342-209 chr19 11685427 11685623 + 2 NA non-coding (NR_028594, exon 3 of 3) non-coding (NR_028594, exon 3 of 3) 11527 NR_028594 401898 Hs.672384 NM_001013691 ZNF833P ZNF833 zinc finger protein 833, pseudogene pseudo 224-315 chr8 56609339 56609514 + 2 NA Intergenic LTR51|LTR|ERV1 -49603 NR_038236 100507632 Hs.583755 NR_038236 ENSG00000246430 LINC00968 - long intergenic non-protein coding RNA 968 ncRNA 218-89 chr14 36511176 36511321 + 2 NA intron (NR_161365, intron 1 of 4) intron (NR_161365, intron 1 of 4) 2287 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 417-225 chr5 98692550 98692919 + 2 NA Intergenic L1PA12|LINE|L1 -75898 NM_001366510 285704 Hs.526902 NM_173670 ENSG00000174136 RGMB DRAGON repulsive guidance molecule BMP co-receptor b protein-coding 434-62 chr12 82689409 82689744 + 2 NA intron (NM_001320321, intron 1 of 10) intron (NM_001320321, intron 1 of 10) 2421 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 176-108 chr5 88500657 88500776 + 2 NA Intergenic Intergenic -61626 NR_105021 102546226 Hs.535810 NR_105021 ENSG00000250156 LINC02060 - long intergenic non-protein coding RNA 2060 ncRNA 443-297 chr8 130414202 130414466 + 2 NA intron (NM_001362925, intron 1 of 29) intron (NM_001362925, intron 1 of 29) 29326 NM_001247996 50807 Hs.655552 NM_018482 ENSG00000153317 ASAP1 AMAP1|CENTB4|DDEF1|PAG2|PAP|ZG14P ArfGAP with SH3 domain, ankyrin repeat and PH domain 1 protein-coding 280-355 chr6 106892569 106892732 + 2 NA Intergenic Intergenic 81389 NM_001291739 100133941 Hs.644105 NM_013230 ENSG00000272398 CD24 CD24A CD24 molecule protein-coding 393-48 chr11 13059444 13059702 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 50257 NM_001080521 644943 Hs.134650 NM_001080521 ENSG00000189431 RASSF10 - Ras association domain family member 10 protein-coding 306-448 chr6 157975458 157975718 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -6275 NM_003898 8871 Hs.434494 NM_003898 ENSG00000078269 SYNJ2 INPP5H synaptojanin 2 protein-coding 325-476 chr6 85823422 85823635 + 2 NA Intergenic L1M2|LINE|L1 -144795 NR_003038 387066 Hs.292457 NR_003038 ENSG00000203875 SNHG5 C6orf160|LINC00044|NCRNA00044|U50HG small nucleolar RNA host gene 5 ncRNA 341-280 chr2 220362477 220362775 + 2 NA Intergenic L1ME3C|LINE|L1 -456061 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 198-247 chr8 115278691 115278851 + 2 NA Intergenic L1MB1|LINE|L1 389242 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 822-42 chr3 183408606 183409166 + 2 NA intron (NM_015078, intron 1 of 29) intron (NM_015078, intron 1 of 29) 19383 NM_015078 23101 Hs.208267 NM_015078 ENSG00000053524 MCF2L2 ARHGEF22 MCF.2 cell line derived transforming sequence-like 2 protein-coding 359-488 chr8 126726154 126726362 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -167780 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 416-169 chr2 74782320 74782662 + 2 NA Intergenic L1MEf|LINE|L1 -50164 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 575-85 chr2 98370857 98371303 + 2 NA intron (NM_001079878, intron 2 of 6) AluSx1|SINE|Alu 24624 NM_001079878 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 491-48 chr12 19722152 19722515 + 2 NA Intergenic Intergenic 281734 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 495-191 chr5 19785722 19786124 + 2 NA intron (NM_001349559, intron 3 of 12) intron (NM_001349559, intron 3 of 12) 100349 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 250-195 chr2 44910800 44910958 + 2 NA Intergenic LTR86C|LTR|ERVL 28009 NR_147194 107985879 Hs.436392 NR_147194 ENSG00000259439 LINC01833 K21.1|RP11-89 long intergenic non-protein coding RNA 1833 ncRNA 498-246 chr7 36934337 36934757 + 2 NA intron (NM_001206480, intron 16 of 21) intron (NM_001206480, intron 16 of 21) -15115 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 511-126 chr2 110779866 110780218 + 2 NA intron (NM_001371254, intron 2 of 18) L1ME2|LINE|L1 47469 NM_001371254 230-91 chr12 99450581 99450712 + 2 NA intron (NM_152788, intron 10 of 25) intron (NM_152788, intron 10 of 25) -197107 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 546-13 chr1 225956233 225956576 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -14912 NM_001172425 7044 Hs.520187 NM_003240 ENSG00000143768 LEFTY2 EBAF|LEFTA|LEFTYA|TGFB4 left-right determination factor 2 protein-coding 460-85 chr14 75670507 75670819 + 2 NA intron (NM_015072, intron 3 of 31) L1MB5|LINE|L1 9417 NM_015072 23093 Hs.709609 NM_015072 ENSG00000119685 TTLL5 CORD19|KIAA0998|STAMP tubulin tyrosine ligase like 5 protein-coding 262-100 chr12 82470984 82471167 + 2 NA intron (NR_144942, intron 8 of 10) intron (NR_144942, intron 8 of 10) -112270 NR_033192 29080 Hs.582627 NM_014167 ENSG00000133773 CCDC59 BR22|HSPC128|TAP26 coiled-coil domain containing 59 protein-coding 272-224 chr2 184468891 184469072 + 2 NA Intergenic L1MD2|LINE|L1 90006 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 697-73 chr8 109982943 109983395 + 2 NA Intergenic Charlie1a|DNA|hAT-Charlie -7398 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 146-71 chr5 45418963 45419043 + 2 NA intron (NM_021072, intron 3 of 7) intron (NM_021072, intron 3 of 7) 277377 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 207-267 chr7 39527623 39527797 + 2 NA Intergenic MLT1F1|LTR|ERVL-MaLR -38694 NM_020192 57002 Hs.72168 NM_020192 ENSG00000241127 YAE1 C7orf36|CIAB2|GK003|YAE1D1 YAE1 maturation factor of ABCE1 protein-coding 281-312 chr4 43590261 43590463 + 2 NA Intergenic Intergenic -97819 NR_146993 105374436 Hs.170605 NR_146993 ENSG00000248143 LINC02383 - long intergenic non-protein coding RNA 2383 ncRNA 259-105 chr13 112151403 112151610 + 2 NA Intergenic Intergenic 9204 NR_134944 100506016 Hs.371110 NR_134944 LOC100506016 - uncharacterized LOC100506016 ncRNA 390-172 chr2 16409217 16409561 + 2 NA Intergenic Intergenic 256445 NM_030797 81553 Hs.467769 NM_030797 ENSG00000197872 FAM49A - family with sequence similarity 49 member A protein-coding 355-237 chr2 51752252 51752531 + 2 NA intron (NR_135237, intron 5 of 10) intron (NR_135237, intron 5 of 10) -618257 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 303-486 chr9 23339451 23339695 + 2 NA Intergenic Intergenic 332826 NR_121602 101929563 Hs.533220 NR_121602 ENSG00000283982 LOC101929563 - uncharacterized LOC101929563 ncRNA 419-60 chr11 115443918 115444277 + 2 NA intron (NM_001098517, intron 1 of 8) intron (NM_001098517, intron 1 of 8) 47341 NR_135103 105369507 Hs.664155 NR_135102 ENSG00000256315 LOC105369507 - uncharacterized LOC105369507 ncRNA 208-105 chr19 36864706 36864844 + 2 NA intron (NM_001242476, intron 3 of 3) MER96|DNA|hAT-Tip100 13124 NM_001242476 25850 Hs.362324 NM_003419 ENSG00000251247 ZNF345 HZF10 zinc finger protein 345 protein-coding 372-372 chr4 104251390 104251719 + 2 NA Intergenic L1M1|LINE|L1 -239411 NR_125926 101929468 Hs.480435 NR_125926 ENSG00000245384 CXXC4-AS1 - CXXC4 antisense RNA 1 ncRNA 183-12 chr10 35290477 35290577 + 2 NA intron (NM_181698, intron 3 of 11) L1ME1|LINE|L1 43502 NM_181698 219771 Hs.14745 NM_145012 ENSG00000108100 CCNY C10orf9|CBCP1|CCNX|CFP1 cyclin Y protein-coding 485-123 chr2 15701552 15702015 + 2 NA intron (NR_110201, intron 4 of 5) MER50|LTR|ERV1 11001 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 231-11 chr1 79424150 79424308 + 2 NA Intergenic L2a|LINE|L2 -417499 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 582-110 chr4 60470780 60471244 + 2 NA Intergenic L1PA16|LINE|L1 -451607 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 719-24 chr14 30092283 30092703 + 2 NA Intergenic L1MA2|LINE|L1 -164646 NM_002742 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 121-30 chr20 62266734 62266832 + 2 NA intron (NM_001363878, intron 5 of 14) L1MC5|LINE|L1 28262 NM_014835 9885 Hs.473254 NM_014835 ENSG00000130703 OSBPL2 DFNA67|DNFA67|ORP-2|ORP2 oxysterol binding protein like 2 protein-coding 280-176 chr19 11786607 11786761 + 2 NA Intergenic Intergenic -11839 NM_152356 126069 Hs.631634 NM_152356 ENSG00000177599 ZNF491 - zinc finger protein 491 protein-coding 339-345 chr3 507548 507838 + 2 NA Intergenic L1PA8|LINE|L1 -84412 NR_110118 101927215 Hs.650700 NR_110118 ENSG00000224957 LINC01266 - long intergenic non-protein coding RNA 1266 ncRNA 314-562 chr8 59608849 59609120 + 2 NA Intergenic Tigger2b_Pri|DNA|TcMar-Tigger 489774 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 566-34 chr12 61669319 61669708 + 2 NA Intergenic LTR49|LTR|ERV1 523326 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 426-35 chr10 118973272 118973567 + 2 NA Intergenic HAL1|LINE|L1 -56295 NM_199461 340719 Hs.591918 NM_199461 ENSG00000188613 NANOS1 EC_Rep1a|NOS-1|NOS1|SPGF12|ZC2HC12A nanos C2HC-type zinc finger 1 protein-coding 326-46 chr1 219020391 219020588 + 2 NA intron (NR_031644, intron 6 of 6) L1MB7|LINE|L1 -101978 NR_146917 105372925 Hs.666318 NR_146917 LINC01710 - long intergenic non-protein coding RNA 1710 ncRNA 266-313 chr5 19076116 19076334 + 2 NA Intergenic L1PB1|LINE|L1 810047 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 282-460 chr8 110945254 110945438 + 2 NA intron (NR_125417, intron 5 of 5) L1PA17|LINE|L1 82087 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 199-177 chr4 31739116 31739277 + 2 NA Intergenic Intergenic 232652 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 324-428 chr5 59863393 59863688 + 2 NA intron (NM_001165899, intron 3 of 16) intron (NM_001165899, intron 3 of 16) 30186 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 244-146 chr2 2895891 2896085 + 2 NA non-coding (NR_110228, exon 7 of 7) non-coding (NR_110228, exon 7 of 7) 230038 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 567-54 chr14 57500497 57500911 + 2 NA Intergenic Intergenic -6847 NM_001283058 55195 Hs.659706 NM_018168 ENSG00000100557 CCDC198 C14orf105 coiled-coil domain containing 198 protein-coding 350-495 chr7 117884605 117884934 + 2 NA Intergenic MIRc|SINE|MIR -11328 NM_033427 83992 Hs.592285 NM_033427 ENSG00000077063 CTTNBP2 C7orf8|CORTBP2|Orf4 cortactin binding protein 2 protein-coding 463-107 chr16 69415968 69416370 + 2 NA Intergenic L1MB7|LINE|L1 -8426 NM_030579 80777 Hs.461131 NM_030579 ENSG00000103018 CYB5B CYB5-M|CYPB5M|OMB5 cytochrome b5 type B protein-coding 258-230 chr20 37635342 37635553 + 2 NA Intergenic L1M5|LINE|L1 -12328 NR_047461 100861522 Hs.580680 NR_047461 ENSG00000225759 LINC00489 - long intergenic non-protein coding RNA 489 ncRNA 211-40 chr10 91583670 91583856 + 2 NA intron (NR_024467, intron 1 of 4) intron (NR_024467, intron 1 of 4) 27697 NR_024467 100188947 Hs.535293 NR_024467 HECTD2-AS1 - HECTD2 antisense RNA 1 ncRNA 217-331 chr6 129780513 129780673 + 2 NA Intergenic Intergenic -70416 NM_033515 93663 Hs.486458 NM_033515 ENSG00000146376 ARHGAP18 MacGAP|SENEX|bA307O14.2 Rho GTPase activating protein 18 protein-coding 246-98 chr12 68323796 68323949 + 2 NA 3' UTR (NM_020128, exon 3 of 3) 3' UTR (NM_020128, exon 3 of 3) 8490 NM_001368282 56890 Hs.655702 NM_017440 ENSG00000111554 MDM1 - Mdm1 nuclear protein protein-coding 259-388 chr8 76422687 76422890 + 2 NA intron (NR_105006, intron 1 of 5) intron (NR_105006, intron 1 of 5) 16134 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 655-98 chr5 89088950 89089427 + 2 NA intron (NR_136221, intron 3 of 6) intron (NR_136221, intron 3 of 6) -185083 NM_001131005 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 384-237 chr3 140791593 140791823 + 2 NA Intergenic L1M2|LINE|L1 113644 NM_152616 287015 Hs.343487 NM_152616 ENSG00000155890 TRIM42 PPP1R40|T4A1 tripartite motif containing 42 protein-coding 316-230 chr18 74855581 74855868 + 2 NA intron (NM_017757, intron 3 of 7) intron (NM_017757, intron 3 of 7) 224761 NM_001146190 55628 Hs.536490 NM_017757 ENSG00000215421 ZNF407 - zinc finger protein 407 protein-coding 397-175 chr2 177830987 177831299 + 2 NA intron (NM_001077197, intron 7 of 20) intron (NM_001077197, intron 7 of 20) 57613 NM_001077196 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 271-276 chr3 113634696 113634884 + 2 NA Intergenic AluSx|SINE|Alu 39914 NR_039648 100616476 NR_039648 ENSG00000265253 MIR4446 mir-4446 microRNA 4446 ncRNA 242-402 chr8 112250822 112251028 + 2 NA intron (NM_001363185, intron 59 of 66) (CTTATAT)n|Simple_repeat|Simple_repeat -392568 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 358-10 chr1 90724347 90724548 + 2 NA Intergenic Intergenic -7145 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 262-258 chr21 21189416 21189596 + 2 NA intron (NM_001352597, intron 1 of 10) FLAM_C|SINE|Alu 42344 NM_001352597 4685 Hs.473450 NM_004540 ENSG00000154654 NCAM2 NCAM21 neural cell adhesion molecule 2 protein-coding 163-73 chr20 43736074 43736195 + 2 NA Intergenic LTR16C|LTR|ERVL -9132 NM_001008901 149699 Hs.447626 NM_176791 ENSG00000124196 GTSF1L C20orf65|FAM112A|dJ1028D15.4 gametocyte specific factor 1 like protein-coding 318-137 chr12 23653732 23654001 + 2 NA intron (NM_152989, intron 10 of 17) L2c|LINE|L2 -69280 NM_178010 6660 Hs.434948 NM_006940 ENSG00000134532 SOX5 L-SOX5|L-SOX5B|L-SOX5F|LAMSHF SRY-box transcription factor 5 protein-coding 503-134 chr19 16763895 16764289 + 2 NA intron (NM_001007525, intron 9 of 18) MER20|DNA|hAT-Charlie 32900 NM_001347994 284434 Hs.406014 NM_001007525 ENSG00000188039 NWD1 - NACHT and WD repeat domain containing 1 protein-coding 321-321 chr2 227002876 227003187 + 2 NA 3' UTR (NM_000092, exon 48 of 48) 3' UTR (NM_000092, exon 48 of 48) 161528 NM_000092 1286 Hs.591645 NM_000092 ENSG00000081052 COL4A4 ATS2|BFH|CA44 collagen type IV alpha 4 chain protein-coding 355-537 chr9 103141939 103142144 + 2 NA non-coding (NR_121578, exon 10 of 10) non-coding (NR_121578, exon 10 of 10) 146708 NM_001340 1539 Hs.3232 NM_001340 ENSG00000155833 CYLC2 - cylicin 2 protein-coding 375-19 chr1 171193115 171193450 + 2 NA intron (NM_001460, intron 2 of 8) intron (NM_001460, intron 2 of 8) 7982 NR_160266 2327 Hs.144912 NM_001460 ENSG00000094963 FMO2 FMO1B1 flavin containing dimethylaniline monoxygenase 2 protein-coding 625-122 chr8 134382325 134382781 + 2 NA Intergenic Intergenic -215518 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 344-426 chr6 88852955 88853209 + 2 NA intron (NM_001286428, intron 8 of 13) intron (NM_001286428, intron 8 of 13) 110536 NM_001286426 8732 Hs.567378 NM_003800 ENSG00000111880 RNGTT CAP1A|HCE|HCE1|hCAP RNA guanylyltransferase and 5'-phosphatase protein-coding 379-202 chr21 33850071 33850295 + 2 NA intron (NM_001331010, intron 28 of 38) intron (NM_001331010, intron 28 of 38) 65621 NM_001697 539 Hs.409140 NM_001697 ENSG00000241837 ATP5PO ATP5O|ATPO|HMC08D05|OSCP ATP synthase peripheral stalk subunit OSCP protein-coding 485-250 chr6 118628511 118628983 + 2 NA intron (NM_001042475, intron 2 of 12) L1MC|LINE|L1 22844 NM_206921 387119 Hs.656959 NM_206921 ENSG00000111860 CEP85L C6orf204|NY-BR-15|bA57K17.2 centrosomal protein 85 like protein-coding 282-193 chr2 18028054 18028215 + 2 NA Intergenic L1M5|LINE|L1 149467 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 246-20 chr1 194581529 194581706 + 2 NA Intergenic Intergenic 1276872 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 823-18 chr2 57324596 57325064 + 2 NA Intergenic L1ME2|LINE|L1 -582821 NM_001288838 7444 Hs.715298 NM_006296 ENSG00000028116 VRK2 - VRK serine/threonine kinase 2 protein-coding 304-274 chr2 138288021 138288281 + 2 NA Intergenic Intergenic 186267 NR_135526 105373635 NR_135526 ENSG00000224231 LINC01832 - long intergenic non-protein coding RNA 1832 ncRNA 294-149 chr16 26909914 26910138 + 2 NA Intergenic LTR16A2|LTR|ERVL -156901 NM_001145545 162083 Hs.120831 NM_182831 C16orf82 TNT chromosome 16 open reading frame 82 protein-coding 237-294 chr5 52070502 52070659 + 2 NA Intergenic Intergenic 62549 NR_147166 105378960 Hs.639310 NR_147166 ENSG00000248789 LINC02118 - long intergenic non-protein coding RNA 2118 ncRNA 230-278 chr4 160754561 160754712 + 2 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -976852 NR_146278 109729132 NR_146278 ENSG00000250488 LINC02233 - long intergenic non-protein coding RNA 2233 ncRNA 435-250 chr8 115272872 115273208 + 2 NA Intergenic Intergenic 394973 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 259-259 chr3 121155146 121155361 + 2 NA intron (NR_145517, intron 8 of 8) L2c|LINE|L2 105613 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 323-509 chr7 93769837 93769998 + 2 NA Intergenic L1MA1|LINE|L1 52989 NR_039796 100616206 NR_039796 ENSG00000265423 MIR4652 - microRNA 4652 ncRNA 426-71 chr14 25595716 25596125 + 2 NA Intergenic Charlie23a|DNA|hAT-Charlie -545623 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 558-118 chr20 42270976 42271437 + 2 NA intron (NM_133170, intron 13 of 31) L2c|LINE|L2 -414277 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 377-174 chr18 72732423 72732669 + 2 NA Intergenic MIRb|SINE|MIR 120836 NR_049858 100847083 NR_049858 ENSG00000263750 MIR548AV - microRNA 548av ncRNA 395-34 chr10 33631435 33631643 + 2 NA Intergenic LTR47A2|LTR|ERVL 141141 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 577-184 chr7 50990951 50991402 + 2 NA Intergenic L1ME1|LINE|L1 -197723 NM_001371008 359-49 chr10 32631061 32631370 + 2 NA intron (NM_001321115, intron 19 of 43) L1M4|LINE|L1 185075 NM_145023 79741 Hs.585464 NM_024688 ENSG00000216937 CCDC7 BIOT2|BioT2-A|BioT2-B|BioT2-C|C10orf68 coiled-coil domain containing 7 protein-coding 284-393 chr8 14896298 14896512 + 2 NA intron (NM_139167, intron 1 of 7) intron (NM_139167, intron 1 of 7) -42895 NR_029875 494332 NR_029875 ENSG00000199127 MIR383 MIRN383|hsa-mir-383|mir-383 microRNA 383 ncRNA 322-579 chrX 51084463 51084666 + 2 NA Intergenic L2a|LINE|L2 86857 NR_110382 101926971 Hs.657995 NR_110382 ENSG00000230317 LINC01284 - long intergenic non-protein coding RNA 1284 ncRNA 216-254 chr4 93467344 93467487 + 2 NA intron (NM_001286838, intron 10 of 14) intron (NM_001286838, intron 10 of 14) -361338 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 302-502 chrX 98393299 98393581 + 2 NA Intergenic Intergenic -828905 NR_125391 10824 Hs.654372 NR_125391 ENSG00000236256 DIAPH2-AS1 EPAG DIAPH2 antisense RNA 1 ncRNA 345-82 chr10 131456484 131456757 + 2 NA Intergenic Intergenic -144899 NM_174937 256536 Hs.126575 NM_174937 ENSG00000176769 TCERG1L - transcription elongation regulator 1 like protein-coding 294-226 chr2 117577718 117577878 + 2 NA Intergenic L1MA7|LINE|L1 -236893 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 179-44 chr2 23206207 23206375 + 2 NA Intergenic LTR78B|LTR|ERV1 -178888 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 357-97 chr13 76673392 76673656 + 2 NA Intergenic L1MCa|LINE|L1 212881 NM_138444 115207 Hs.644125 NM_138444 ENSG00000178695 KCTD12 C13orf2|PFET1|PFETIN potassium channel tetramerization domain containing 12 protein-coding 237-306 chr5 108633612 108633802 + 2 NA Intergenic Intergenic 94554 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 219-138 chr18 3810035 3810214 + 2 NA intron (NM_001242762, intron 2 of 9) intron (NM_001242762, intron 2 of 9) 35234 NM_001242766 9229 Hs.594640 NM_004746 ENSG00000170579 DLGAP1 DAP-1|DAP-1-ALPHA|DAP-1-BETA|DAP1|DLGAP1A|DLGAP1B|GKAP|SAPAP1 DLG associated protein 1 protein-coding 415-229 chr5 178808118 178808413 + 2 NA intron (NR_135095, intron 3 of 10) L1M4|LINE|L1 10170 NR_024035 729522 Hs.382790 NR_024035 ENSG00000250420 AACSP1 AACSL acetoacetyl-CoA synthetase pseudogene 1 pseudo 285-208 chr2 139097347 139097598 + 2 NA Intergenic L1MD1|LINE|L1 200148 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 287-156 chr16 47991946 47992138 + 2 NA Intergenic Intergenic 26353 NR_146502 105371238 Hs.743032 NR_146502 LINC02134 - long intergenic non-protein coding RNA 2134 ncRNA 302-223 chr2 123347456 123347702 + 2 NA Intergenic L1MB7|LINE|L1 -274098 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 322-174 chr15 59319796 59319985 + 2 NA intron (NM_004998, intron 1 of 27) AluSp|SINE|Alu 52981 NM_004998 4643 Hs.654506 NM_004998 ENSG00000157483 MYO1E FSGS6|HuncM-IC|MYO1C myosin IE protein-coding 334-496 chr7 47941593 47941839 + 2 NA intron (NM_138295, intron 2 of 56) intron (NM_138295, intron 2 of 56) 6775 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 311-157 chr15 56225362 56225609 + 2 NA intron (NM_001370561, intron 4 of 11) intron (NM_001370561, intron 4 of 11) 18394 NM_001368073 64864 Hs.745089 NM_022841 ENSG00000181827 RFX7 RFXDC2 regulatory factor X7 protein-coding 395-153 chr19 36393684 36393888 + 2 NA exon (NM_133466, exon 5 of 5) exon (NM_133466, exon 5 of 5) -14585 NM_020917 57677 Hs.35524 NM_020917 ENSG00000142065 ZFP14 ZNF531 ZFP14 zinc finger protein protein-coding 510-160 chr2 226427903 226428395 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 230644 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 327-229 chr19 55722475 55722778 + 2 NA intron (NM_176820, intron 4 of 8) intron (NM_176820, intron 4 of 8) 15776 NM_176820 338321 Hs.661568 NM_176820 ENSG00000185792 NLRP9 CLR19.1|NALP9|NOD6|PAN12 NLR family pyrin domain containing 9 protein-coding 466-32 chr10 82840954 82841333 + 2 NA intron (NR_163252, intron 3 of 8) MLT1C|LTR|ERVL-MaLR -608223 NR_120666 101929590 Hs.733268 NR_120666 ENSG00000225738 NRG3-AS1 C10orf100|Em:AC010157.1 NRG3 antisense RNA 1 ncRNA 361-144 chr14 70870788 70871064 + 2 NA Intergenic MER41-int|LTR|ERV1 -36533 NM_014982 22990 Hs.446559 NM_014982 ENSG00000100731 PCNX1 PCNX|PCNXL1|pecanex pecanex 1 protein-coding 915-29 chr8 79100039 79100644 + 2 NA Intergenic L2|LINE|L2 -231847 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 294-187 chr19 31524811 31524995 + 2 NA Intergenic L1MD3|LINE|L1 -63286 NM_001278577 100507527 Hs.432564 NM_001205273 THEG5 - testis highly expressed protein 5 protein-coding 333-325 chr21 44609195 44609400 + 2 NA intron (NM_144991, intron 1 of 11) HAL1|LINE|L1 -2782 NM_198695 386681 Hs.528021 NM_198695 ENSG00000187766 KRTAP10-8 KAP10.8|KRTAP18-8|KRTAP18.8 keratin associated protein 10-8 protein-coding 288-417 chr7 96153737 96153993 + 2 NA intron (NM_001160210, intron 13 of 17) intron (NM_001160210, intron 13 of 17) 65891 NR_030322 693176 NR_030322 ENSG00000208025 MIR591 MIRN591|hsa-mir-591 microRNA 591 ncRNA 350-216 chr2 49787384 49787664 + 2 NA Intergenic Intergenic 186679 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 184-117 chr3 140568528 140568683 + 2 NA 3' UTR (NM_022131, exon 17 of 17) 3' UTR (NM_022131, exon 17 of 17) -59816 NR_108084 101927808 Hs.581236 NR_108084 ENSG00000250433 CLSTN2-AS1 - CLSTN2 antisense RNA 1 ncRNA 533-180 chr5 46126092 46126465 + 2 NA Intergenic ALR/Alpha|Satellite|centr -429898 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 354-270 chr21 30726121 30726381 + 2 NA Intergenic Intergenic -7474 NM_001164435 100288323 Hs.580877 NM_001164435 ENSG00000231068 KRTAP21-3 - keratin associated protein 21-3 protein-coding 376-346 chr6 52080549 52080880 + 2 NA intron (NM_138694, intron 4 of 66) MER33|DNA|hAT-Charlie 6899 NM_170724 5314 Hs.662050 NM_138694 ENSG00000170927 PKHD1 ARPKD|FCYT|FPC|PKD4|TIGM1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin protein-coding 314-415 chr4 36868101 36868330 + 2 NA Intergenic Intergenic -133564 NR_134669 100508631 Hs.397553 NR_134669 ENSG00000261761 LINC02616 - long intergenic non-protein coding RNA 2616 ncRNA 310-459 chr6 136111463 136111707 + 2 NA intron (NM_018945, intron 3 of 12) intron (NM_018945, intron 3 of 12) -38758 NR_149042 644135 Hs.126980 NR_149042 ENSG00000237596 LOC644135 - uncharacterized LOC644135 ncRNA 356-173 chr16 9939637 9939925 + 2 NA intron (NM_001134408, intron 2 of 13) intron (NM_001134408, intron 2 of 13) 242286 NM_001134408 2903 Hs.411472 NM_000833 ENSG00000183454 GRIN2A EPND|FESD|GluN2A|LKS|NMDAR2A|NR2A glutamate ionotropic receptor NMDA type subunit 2A protein-coding 124-59 chr5 28229030 28229097 + 2 NA Intergenic L1MD1|LINE|L1 58602 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 180-57 chr16 35284434 35284589 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -78905 NR_027080 283914 Hs.385772 NR_027079 ENSG00000259841 LINC01566 - long intergenic non-protein coding RNA 1566 ncRNA 536-163 chr3 81780159 81780532 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR -18700 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 276-73 chr11 12463471 12463735 + 2 NA intron (NM_018222, intron 1 of 12) L1MC3|LINE|L1 86032 NM_018222 55742 Hs.432914 NM_018222 ENSG00000197702 PARVA CH-ILKBP|MXRA2 parvin alpha protein-coding 165-85 chr3 158903517 158903672 + 2 NA Intergenic Intergenic 101540 NR_110328 64747 Hs.58663 NM_022736 ENSG00000118855 MFSD1 SMAP4 major facilitator superfamily domain containing 1 protein-coding 306-496 chr8 47000340 47000553 + 2 NA Intergenic Intergenic 159560 NR_027012 497634 Hs.406982 NR_027012 LINC00293 BEYLA|NCRNA00293 long intergenic non-protein coding RNA 293 ncRNA 941-9 chr15 49652225 49653048 + 2 NA 3' UTR (NM_001144955, exon 5 of 5) 3' UTR (NM_001144955, exon 5 of 5) 31588 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 319-313 chr22 36902090 36902316 + 2 NA Intergenic Intergenic -11425 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 225-6 chr1 106446891 106447069 + 2 NA Intergenic L1M5|LINE|L1 -371259 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 461-228 chr5 179032656 179033010 + 2 NA exon (NM_001136116, exon 5 of 5) exon (NM_001136116, exon 5 of 5) 9029 NM_001353373 345462 Hs.445740 NM_001136116 ENSG00000234284 ZNF879 DKFZp686E2433 zinc finger protein 879 protein-coding 241-208 chr2 188317477 188317664 + 2 NA intron (NR_045563, intron 2 of 12) intron (NR_045563, intron 2 of 12) 20078 NR_030287 693146 NR_030287 ENSG00000207951 MIR561 MIRN561|hsa-mir-561|mir-561 microRNA 561 ncRNA 441-50 chr12 9698679 9699050 + 2 NA non-coding (NR_036693, exon 4 of 4) non-coding (NR_036693, exon 4 of 4) 29151 NM_013269 29121 Hs.268326 NM_013269 ENSG00000069493 CLEC2D CLAX|LLT1|OCIL C-type lectin domain family 2 member D protein-coding 691-61 chr5 7668298 7668817 + 2 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 182576 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 254-108 chr14 42573436 42573642 + 2 NA Intergenic L1MA3|LINE|L1 966683 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 263-118 chr15 69228255 69228466 + 2 NA intron (NM_001324092, intron 2 of 3) L1MEg|LINE|L1 67725 NM_001324092 26035 Hs.183006 NM_015554 ENSG00000138604 GLCE HSEPI glucuronic acid epimerase protein-coding 350-494 chr7 110822953 110823148 + 2 NA intron (NM_001350963, intron 5 of 5) UCON33|DNA|TcMar-Tigger -267956 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 256-109 chr13 88816952 88817180 + 2 NA Intergenic L1MA10|LINE|L1 190213 NR_047490 100861553 Hs.560132 NR_047490 ENSG00000261666 LINC00560 - long intergenic non-protein coding RNA 560 ncRNA 401-196 chr22 28726249 28726560 + 2 NA intron (NM_001257387, intron 2 of 15) (TA)n|Simple_repeat|Simple_repeat 15416 NM_001005735 11200 Hs.291363 NM_007194 ENSG00000183765 CHEK2 CDS1|CHK2|HuCds1|LFS2|PP1425|RAD53|hCds1 checkpoint kinase 2 protein-coding 246-14 chr1 153451880 153452044 + 2 NA Intergenic Intergenic 8689 NM_002963 6278 Hs.112408 NM_002963 ENSG00000143556 S100A7 PSOR1|S100A7c S100 calcium binding protein A7 protein-coding 226-102 chr15 67287608 67287749 + 2 NA intron (NM_001322475, intron 3 of 17) L1PA13|LINE|L1 -32480 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 272-203 chr2 101166265 101166412 + 2 NA Intergenic Intergenic 14678 NR_135594 100506286 Hs.679790 NR_135594 ENSG00000272902 TBC1D8-AS1 - TBC1 domain family member 8 antisense RNA 1 ncRNA 331-70 chr10 113275416 113275676 + 2 NA Intergenic MIR3|SINE|MIR 146275 NM_001349870 6934 Hs.593995 NM_030756 ENSG00000148737 TCF7L2 TCF-4|TCF4 transcription factor 7 like 2 protein-coding 412-8 chr1 66044577 66044881 + 2 NA intron (NR_123718, intron 2 of 2) intron (NR_123718, intron 2 of 2) 5989 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 478-119 chr17 69512711 69513105 + 2 NA intron (NM_001330450, intron 2 of 11) intron (NM_001330450, intron 2 of 11) 10646 NM_001330450 5608 Hs.49329 NM_002758 ENSG00000108984 MAP2K6 MAPKK6|MEK6|MKK6|PRKMK6|SAPKK-3|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 261-257 chr3 146542768 146542995 + 2 NA intron (NM_021105, intron 1 of 8) intron (NM_021105, intron 1 of 8) 1674 NM_001363872 5359 Hs.130759 NM_021105 ENSG00000188313 PLSCR1 MMTRA1B phospholipid scramblase 1 protein-coding 479-27 chr10 75256914 75257217 + 2 NA Intergenic L1MEd|LINE|L1 -21108 NM_144589 118881 Hs.355333 NM_144589 ENSG00000165644 COMTD1 - catechol-O-methyltransferase domain containing 1 protein-coding 370-479 chr9 107941789 107942146 + 2 NA Intergenic Intergenic -452198 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 349-186 chr15 80368890 80369230 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -27255 NR_033833 283688 Hs.525933 NR_033833 ENSG00000259361 LINC00927 - long intergenic non-protein coding RNA 927 ncRNA 259-181 chr19 52235022 52235251 + 2 NA Intergenic L1M1|LINE|L1 13116 NR_106859 102466984 NR_106859 ENSG00000274380 MIR6801 hsa-mir-6801 microRNA 6801 ncRNA 272-288 chr3 189322169 189322430 + 2 NA 3' UTR (NM_198485, exon 6 of 6) 3' UTR (NM_198485, exon 6 of 6) -81705 NR_046722 100874027 Hs.616080 NR_046722 ENSG00000230115 TPRG1-AS2 - TPRG1 antisense RNA 2 ncRNA 385-303 chr5 85545236 85545547 + 2 NA Intergenic Intergenic -737053 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 327-66 chr10 104800367 104800610 + 2 NA intron (NM_014978, intron 1 of 26) L1MC1|LINE|L1 -134272 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 302-13 chr1 111116956 111117227 + 2 NA TTS (NM_001349882) TTS (NM_001349882) -22292 NM_001007794 10390 Hs.363572 NM_006090 ENSG00000134255 CEPT1 - choline/ethanolamine phosphotransferase 1 protein-coding 370-13 chr1 112297442 112297731 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -98628 NM_018704 55917 Hs.744100 NM_018704 ENSG00000143079 CTTNBP2NL - CTTNBP2 N-terminal like protein-coding 666-11 chr10 111394867 111395400 + 2 NA Intergenic LTR52|LTR|ERVL 280842 NR_159949 113633881 NR_159949 HEAT2 lnc-ADRA2A-1:1 HEart disease Associated Transcript 2 ncRNA 399-232 chr4 104072726 104073068 + 2 NA Intergenic Intergenic -352912 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 182-69 chr17 45033420 45033520 + 2 NA intron (NM_001288655, intron 3 of 4) AluSz|SINE|Alu 18162 NM_001128631 79877 Hs.463148 NM_024819 ENSG00000172992 DCAKD - dephospho-CoA kinase domain containing protein-coding 226-48 chr10 107690143 107690294 + 2 NA Intergenic L1ME4b|LINE|L1 379075 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 394-52 chr10 106143997 106144240 + 2 NA intron (NR_134330, intron 1 of 4) intron (NR_134330, intron 1 of 4) 3953 NR_134329 105378470 Hs.142910 NR_134329 ENSG00000229775 LINC02624 - long intergenic non-protein coding RNA 2624 ncRNA 566-46 chr14 29744781 29745170 + 2 NA intron (NM_001330069, intron 1 of 18) L2a|LINE|L2 182121 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 320-410 chr4 161806101 161806400 + 2 NA intron (NM_001128428, intron 4 of 14) MIR|SINE|MIR -216483 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 338-285 chr2 181435324 181435518 + 2 NA Intergenic L1PA17|LINE|L1 -21471 NM_001316312 3676 Hs.72981 NM_000885 ENSG00000115232 ITGA4 CD49D|IA4 integrin subunit alpha 4 protein-coding 442-259 chr6 116492890 116493257 + 2 NA Intergenic Charlie5|DNA|hAT-Charlie -18566 NM_153711 254228 Hs.105081 NM_153711 ENSG00000178033 CALHM5 C6orf188|FAM26E|dJ493F7.3 calcium homeostasis modulator family member 5 protein-coding 433-145 chr2 186406095 186406457 + 2 NA Intergenic L2a|LINE|L2 -79984 NM_018471 55854 Hs.741180 NM_018471 ENSG00000065548 ZC3H15 HT010|LEREPO4|MSTP012 zinc finger CCCH-type containing 15 protein-coding 312-121 chr13 28988428 28988715 + 2 NA intron (NM_001366651, intron 2 of 14) intron (NM_001366651, intron 2 of 14) -35886 NM_001033602 23281 Hs.22287 NM_015233 ENSG00000132938 MTUS2 CAZIP|ICIS|KIAA0774|TIP150 microtubule associated scaffold protein 2 protein-coding 317-340 chr4 35610708 35610872 + 2 NA Intergenic Intergenic 633149 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 451-36 chr11 56692494 56692832 + 2 NA Intergenic Intergenic -7725 NM_001013358 504191 NM_001013358 OR9G9 OR9G1 olfactory receptor family 9 subfamily G member 9 protein-coding 557-157 chr5 28181903 28182368 + 2 NA Intergenic L1ME3A|LINE|L1 105530 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 321-548 chr8 59232110 59232331 + 2 NA Intergenic Intergenic 113010 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 372-347 chr4 416223 416480 + 2 NA Intergenic Intergenic 57858 NR_002451 79963 Hs.677493 NM_024903 ENSG00000251595 ABCA11P ABCA11|EST1133530 ATP binding cassette subfamily A member 11, pseudogene pseudo 352-118 chr12 118635013 118635252 + 2 NA Intergenic X8_LINE|LINE|CR1 126547 NR_134998 105370014 Hs.550870 NR_134998 ENSG00000256750 LINC02423 - long intergenic non-protein coding RNA 2423 ncRNA 141-25 chr15 64485990 64486091 + 2 NA Intergenic L1MD2|LINE|L1 -13380 NM_015042 23060 Hs.595451 NM_015042 ENSG00000180357 ZNF609 - zinc finger protein 609 protein-coding 329-335 chr21 19529879 19530173 + 2 NA Intergenic LTR83|LTR|ERVL 369729 NR_146910 105372746 Hs.580899 NR_146910 ENSG00000233480 LINC01683 C21orf40 long intergenic non-protein coding RNA 1683 ncRNA 482-121 chr2 49838998 49839374 + 2 NA Intergenic Intergenic 135017 NM_001320156 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 520-305 chr8 120549438 120549809 + 2 NA intron (NM_021021, intron 4 of 6) MamRep137|DNA|TcMar-Tigger 104204 NM_022045 27085 Hs.657656 NM_022045 ENSG00000172167 MTBP MDM2BP MDM2 binding protein protein-coding 688-119 chrX 66382704 66383117 + 2 NA Intergenic Intergenic 215160 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 355-201 chr17 73067406 73067699 + 2 NA intron (NM_001352692, intron 3 of 9) intron (NM_001352692, intron 3 of 9) 25136 NM_001352691 201266 Hs.221127 NM_139177 ENSG00000133195 SLC39A11 C17orf26|ZIP-11|ZIP11 solute carrier family 39 member 11 protein-coding 532-138 chr2 202828199 202828689 + 2 NA intron (NM_001288624, intron 1 of 3) intron (NM_001288624, intron 1 of 3) 790 NM_001288624 130026 Hs.516629 NM_138468 ENSG00000163596 ICA1L ALS2CR14|ALS2CR15 islet cell autoantigen 1 like protein-coding 395-185 chr2 154543176 154543447 + 2 NA Intergenic L1ME2|LINE|L1 -85873 NR_161181 100144595 Hs.683952 NR_161181 LOC100144595 - uncharacterized LOC100144595 ncRNA 311-436 chr6 76922035 76922249 + 2 NA Intergenic L1M3f|LINE|L1 -328519 NR_149101 105377860 Hs.544542 NR_149101 ENSG00000236635 LINC02540 - long intergenic non-protein coding RNA 2540 ncRNA 566-57 chr15 87766699 87767074 + 2 NA Intergenic Intergenic 179382 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 287-13 chr1 76542170 76542395 + 2 NA intron (NM_001349109, intron 3 of 3) intron (NM_001349109, intron 3 of 3) 236985 NR_149059 110806286 NR_149059 ENSG00000237552 LINC02567 - long intergenic non-protein coding RNA 2567 ncRNA 297-309 chr3 180328894 180329070 + 2 NA Intergenic Intergenic -85191 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 388-42 chr10 51455223 51455456 + 2 NA intron (NM_001098512, intron 2 of 17) THE1B-int|LTR|ERVL-MaLR 155766 NR_030336 693190 NR_030336 ENSG00000207813 MIR605 MIRN605|hsa-mir-605|mir-605 microRNA 605 ncRNA 436-337 chrX 63099648 63100014 + 2 NA Intergenic L1M3|LINE|L1 251501 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 536-166 chr3 108873813 108874267 + 2 NA Intergenic L1ME3E|LINE|L1 51254 NM_016388 50852 Hs.138701 NM_016388 ENSG00000163519 TRAT1 HSPC062|TCRIM|TRIM|pp29/30 T cell receptor associated transmembrane adaptor 1 protein-coding 182-105 chr21 31052373 31052466 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -13943 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 542-143 chr3 159647249 159647741 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 121117 NR_121669 100874433 Hs.601476 NR_121669 IQCJ-SCHIP1-AS1 uaz98 IQCJ-SCHIP1 readthrough antisense RNA 1 ncRNA 306-210 chr18 75499625 75499814 + 2 NA Intergenic Intergenic -72016 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 1071-18 chr5 151365049 151366005 + 2 NA Intergenic Intergenic -17968 NM_181776 153201 Hs.483877 NM_181776 ENSG00000186335 SLC36A2 PAT2|TRAMD1 solute carrier family 36 member 2 protein-coding 324-250 chr2 35206279 35206511 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -265010 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 189-58 chr14 86275041 86275201 + 2 NA Intergenic Intergenic 340443 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 478-297 chr8 119320896 119321171 + 2 NA Intergenic MER4D|LTR|ERV1 -4138 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 250-7 chr1 66859965 66860155 + 2 NA intron (NM_024763, intron 7 of 16) L1MC2|LINE|L1 -58801 NM_005478 10022 Hs.251380 NM_005478 ENSG00000172410 INSL5 PRO182|UNQ156 insulin like 5 protein-coding 175-23 chr10 23757835 23757936 + 2 NA intron (NM_001098500, intron 1 of 18) L1MB3|LINE|L1 63158 NM_001098500 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 211-223 chr5 12382046 12382157 + 2 NA Intergenic L1PA14|LINE|L1 -192756 NR_033383 404663 Hs.552273 NR_033383 LINC01194 CT49|TAG long intergenic non-protein coding RNA 1194 ncRNA 275-244 chr3 43355440 43355667 + 2 NA Intergenic L1PREC2|LINE|L1 -3591 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 220-237 chr3 108360082 108360253 + 2 NA intron (NM_001370244, intron 6 of 9) Tigger7|DNA|TcMar-Tigger 48382 NM_001282557 11148 Hs.225968 NM_007072 ENSG00000114455 HHLA2 B7-H5|B7-H7|B7H7|B7y HERV-H LTR-associating 2 protein-coding 355-89 chr11 41061240 41061566 + 2 NA intron (NM_001258419, intron 1 of 6) intron (NM_001258419, intron 1 of 6) 398233 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 247-228 chr20 11182703 11182888 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR 90588 NR_038972 339593 Hs.434320 NR_038972 LOC339593 - uncharacterized LOC339593 ncRNA 312-472 chr7 13838966 13839240 + 2 NA Intergenic Intergenic 147411 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 393-16 chr1 89727204 89727428 + 2 NA Intergenic L2c|LINE|L2 -93716 NM_001134479 55144 Hs.482087 NM_018103 ENSG00000171492 LRRC8D LRRC5 leucine rich repeat containing 8 VRAC subunit D protein-coding 266-373 chr6 132576489 132576673 + 2 NA Intergenic Intergenic 6259 NM_175067 319100 Hs.434196 NM_175067 ENSG00000146383 TAAR6 TA4|TAR4|TAR6|TRAR4|taR-4|taR-6 trace amine associated receptor 6 protein-coding 276-351 chr4 108923033 108923261 + 2 NA intron (NR_045756, intron 7 of 35) intron (NR_045756, intron 7 of 35) -160094 NM_001331032 64850 Hs.106576 NM_031279 ENSG00000164089 ETNPPL AGXT2L1 ethanolamine-phosphate phospho-lyase protein-coding 176-146 chr8 121018621 121018780 + 2 NA Intergenic Intergenic -206654 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 298-312 chr4 11329515 11329790 + 2 NA Intergenic L1M5|LINE|L1 -39175 NR_030298 693157 NR_030298 ENSG00000207716 MIR572 MIRN572|hsa-mir-572 microRNA 572 ncRNA 319-116 chr12 118840422 118840634 + 2 NA Intergenic MER20|DNA|hAT-Charlie -6992 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 591-66 chr2 35162700 35163207 + 2 NA Intergenic Intergenic -308452 NR_039629 100616475 NR_039629 ENSG00000265301 MIR548AD - microRNA 548ad ncRNA 313-348 chr3 86037086 86037359 + 2 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -209172 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 243-292 chr3 98804941 98805064 + 2 NA intron (NM_080927, intron 13 of 15) U6|snRNA|snRNA 41695 NM_001323368 10402 Hs.148716 NM_006100 ENSG00000064225 ST3GAL6 SIAT10|ST3GALVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 279-232 chr21 19154074 19154291 + 2 NA Intergenic MLT1E|LTR|ERVL-MaLR -394370 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 341-552 chr8 140226208 140226421 + 2 NA intron (NM_001160372, intron 16 of 22) intron (NM_001160372, intron 16 of 22) -125779 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 195-178 chr4 173254604 173254779 + 2 NA intron (NM_017423, intron 2 of 11) intron (NM_017423, intron 2 of 11) -13469 NR_036093 100422849 NR_036093 ENSG00000221296 MIR548T - microRNA 548t ncRNA 200-19 chr1 195389129 195389283 + 2 NA Intergenic Intergenic 699509 NR_146895 105371673 NR_146895 LINC01724 - long intergenic non-protein coding RNA 1724 ncRNA 371-122 chr15 92197212 92197483 + 2 NA Intergenic Charlie7a|DNA|hAT-Charlie -196534 NM_006011 8128 Hs.302341 NM_006011 ENSG00000140557 ST8SIA2 HsT19690|SIAT8-B|SIAT8B|ST8SIA-II|ST8SiaII|STX ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2 protein-coding 259-116 chr14 55767535 55767702 + 2 NA TTS (NR_004844) TTS (NR_004844) 1373 NR_004844 645683 Hs.663461 NR_004844 ENSG00000177350 RPL13AP3 RPL13A_11_1370 ribosomal protein L13a pseudogene 3 pseudo 429-221 chr5 5741736 5742049 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 319215 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 496-298 chr8 135249675 135250121 + 2 NA intron (NR_120396, intron 1 of 4) L1PB1|LINE|L1 15767 NR_026706 286094 Hs.440978 NR_026706 ENSG00000254083 LINC01591 - long intergenic non-protein coding RNA 1591 ncRNA 317-480 chr8 79317107 79317356 + 2 NA Intergenic MIRb|SINE|MIR -14957 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 285-266 chr3 43476031 43476270 + 2 NA intron (NM_001346464, intron 12 of 13) intron (NM_001346464, intron 12 of 13) -124188 NR_046757 100873954 Hs.600984 NR_046757 SNRK-AS1 - SNRK antisense RNA 1 ncRNA 245-336 chr7 136628383 136628536 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -240193 NM_001006630 1129 Hs.535891 NM_000739 ENSG00000181072 CHRM2 HM2 cholinergic receptor muscarinic 2 protein-coding 562-69 chr15 95205279 95205648 + 2 NA Intergenic MLT2A2|LTR|ERVL 121637 NR_034095 400456 Hs.536404 NR_034095 ENSG00000248441 LINC01197 - long intergenic non-protein coding RNA 1197 ncRNA 227-94 chr13 47359214 47359368 + 2 NA Intergenic L1MB7|LINE|L1 -462215 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 248-88 chr12 78288031 78288205 + 2 NA Intergenic Intergenic 71628 NR_135021 105369860 Hs.156898 NR_135021 ENSG00000258220 LINC02424 - long intergenic non-protein coding RNA 2424 ncRNA 243-4 chr1 37205875 37206055 + 2 NA Intergenic L1MA7|LINE|L1 44402 NR_036217 100422898 NR_036217 ENSG00000264698 MIR4255 - microRNA 4255 ncRNA 362-192 chr17 62014342 62014617 + 2 NA intron (NM_005121, intron 8 of 29) AluSx1|SINE|Alu 50799 NM_005121 9969 Hs.282678 NM_005121 ENSG00000108510 MED13 ARC250|DRIP250|HSPC221|THRAP1|TRAP240 mediator complex subunit 13 protein-coding 456-246 chr5 28331536 28331853 + 2 NA Intergenic L1PA16|LINE|L1 -44029 NR_134265 105374698 Hs.124461 NR_134265 ENSG00000249785 LINC02103 - long intergenic non-protein coding RNA 2103 ncRNA 378-330 chr5 14927250 14927587 + 2 NA Intergenic Intergenic -55640 NM_054027 56172 Hs.156727 NM_054027 ENSG00000154122 ANKH ANK|CCAL2|CMDJ|CPPDD|HANK|MANK|SLC62A1 ANKH inorganic pyrophosphate transport regulator protein-coding 177-73 chr2 80636115 80636259 + 2 NA intron (NM_001320810, intron 12 of 12) intron (NM_001320810, intron 12 of 12) 322808 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 400-315 chr7 3660940 3661182 + 2 NA intron (NM_152744, intron 4 of 44) intron (NM_152744, intron 4 of 44) 359809 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 413-237 chr5 37843292 37843543 + 2 NA intron (NR_103441, intron 1 of 3) intron (NR_103441, intron 1 of 3) 2979 NR_103441 100861519 Hs.536820 NM_001278094 GDNF-AS1 GDNFOS GDNF antisense RNA 1 ncRNA 348-160 chr15 79387196 79387514 + 2 NA intron (NM_001330376, intron 2 of 2) L1M5|LINE|L1 -45161 NM_015206 23251 Hs.301654 NM_015206 ENSG00000169330 MINAR1 KIAA1024|UBTOR membrane integral NOTCH2 associated receptor 1 protein-coding 327-320 chr3 21409857 21410117 + 2 NA Intergenic Intergenic 4261 NR_002311 391518 Hs.543226 NR_002311 VENTXP7 HPX42|VENTX1 VENT homeobox pseudogene 7 pseudo 898-34 chr6 143206102 143206759 + 2 NA intron (NM_001366354, intron 3 of 4) intron (NM_001366354, intron 3 of 4) 41648 NM_001366361 51390 Hs.567501 NM_016108 ENSG00000146416 AIG1 AIG-1|dJ95L4.1 androgen induced 1 protein-coding 251-292 chr5 27822356 27822592 + 2 NA Intergenic Intergenic 350182 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 380-392 chr8 76039329 76039520 + 2 NA Intergenic LTR16|LTR|ERVL -367230 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 216-177 chr2 129313517 129313693 + 2 NA Intergenic L1MDa|LINE|L1 -39714 NR_122042 151121 Hs.531687 NM_001033657 ENSG00000204460 LINC01854 - long intergenic non-protein coding RNA 1854 ncRNA 302-451 chr8 82618322 82618533 + 2 NA Intergenic Intergenic -293677 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 210-19 chr1 192758886 192759088 + 2 NA Intergenic L1MC1|LINE|L1 42659 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 361-118 chr12 115220067 115220336 + 2 NA Intergenic L2a|LINE|L2 -536026 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 519-143 chr3 25501830 25502200 + 2 NA intron (NR_110892, intron 3 of 6) intron (NR_110892, intron 3 of 6) 43705 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 242-75 chr12 32347560 32347746 + 2 NA intron (NR_148725, intron 8 of 9) AluSc|SINE|Alu -51905 NM_001370298 121512 Hs.117835 NM_139241 ENSG00000139132 FGD4 CMT4H|FRABP|ZFYVE6 FYVE, RhoGEF and PH domain containing 4 protein-coding 486-174 chr20 48564739 48565110 + 2 NA Intergenic MER53|DNA|hAT 205013 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 473-130 chr2 49473385 49473775 + 2 NA Intergenic L1M7|LINE|L1 -319053 NM_000145 2492 Hs.1428 NM_000145 ENSG00000170820 FSHR FSHR1|FSHRO|LGR1|ODG1 follicle stimulating hormone receptor protein-coding 155-32 chr11 120186950 120187071 + 2 NA Intergenic Intergenic 18033 NR_159965 107984399 Hs.638417 NR_159965 LOC107984399 - uncharacterized LOC107984399 ncRNA 307-98 chr12 10480008 10480271 + 2 NA Intergenic L1MA8|LINE|L1 -25454 NM_001304448 3821 Hs.512576 NM_002259 ENSG00000134545 KLRC1 CD159A|NKG2|NKG2A killer cell lectin like receptor C1 protein-coding 296-201 chr18 75555848 75556051 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR -128246 NM_001303482 284274 Hs.666744 NM_001037331 ENSG00000206026 SMIM21 C18orf62 small integral membrane protein 21 protein-coding 342-119 chr12 96549676 96549952 + 2 NA intron (NM_001306084, intron 15 of 67) intron (NM_001306084, intron 15 of 67) 60237 NM_001306084 144535 Hs.382121 NM_198520 ENSG00000188596 CFAP54 C12orf55|C12orf63 cilia and flagella associated protein 54 protein-coding 325-534 chr8 43925735 43925905 + 2 NA Intergenic ALR/Alpha|Satellite|centr 633378 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 492-132 chr2 100356092 100356447 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -33536 NM_198461 164832 Hs.21380 NM_198461 ENSG00000170500 LONRF2 RNF192 LON peptidase N-terminal domain and ring finger 2 protein-coding 353-337 chr3 120648171 120648392 + 2 NA intron (NM_000187, intron 6 of 13) L2b|LINE|L2 33958 NM_000187 3081 Hs.368254 NM_000187 ENSG00000113924 HGD AKU|HGO homogentisate 1,2-dioxygenase protein-coding 298-425 chr7 33878306 33878509 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR -26508 NM_133468 168667 Hs.660998 NM_133468 ENSG00000164619 BMPER CRIM3|CV-2|CV2 BMP binding endothelial regulator protein-coding 443-151 chr2 102671034 102671430 + 2 NA intron (NM_003048, intron 3 of 11) intron (NM_003048, intron 3 of 11) 51679 NM_003048 6549 Hs.250083 NM_003048 ENSG00000115616 SLC9A2 NHE2 solute carrier family 9 member A2 protein-coding 259-224 chr2 235817879 235818021 + 2 NA intron (NM_001037131, intron 9 of 17) intron (NM_001037131, intron 9 of 17) -300029 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 300-38 chr10 33356837 33357109 + 2 NA Intergenic Intergenic -22068 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 315-239 chr2 75851356 75851583 + 2 NA Intergenic Intergenic -140554 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 305-465 chr6 39686329 39686604 + 2 NA intron (NM_001289020, intron 3 of 21) intron (NM_001289020, intron 3 of 21) 38942 NM_145027 221458 Hs.588202 NM_145027 ENSG00000164627 KIF6 C6orf102|dJ1043E3.1|dJ137F1.4|dJ188D3.1 kinesin family member 6 protein-coding 383-19 chr1 176605337 176605690 + 2 NA intron (NM_021936, intron 3 of 4) MLT1M|LTR|ERVL-MaLR 142338 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 281-169 chr18 4332497 4332724 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) 68008 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 193-183 chr7 7047100 7047247 + 2 NA Intergenic Intergenic 19872 NR_037454 100500886 NR_037454 ENSG00000266287 MIR3683 - microRNA 3683 ncRNA 273-421 chr7 46637096 46637342 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 59903 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 416-276 chr5 92414719 92415077 + 2 NA Intergenic Intergenic -1031581 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 316-360 chr3 105172776 105173036 + 2 NA Intergenic Intergenic -193807 NM_001243283 214 Hs.591293 NM_001627 ENSG00000170017 ALCAM CD166|MEMD activated leukocyte cell adhesion molecule protein-coding 346-461 chr7 33145188 33145518 + 2 NA intron (NM_001348044, intron 1 of 18) MIRc|SINE|MIR 15789 NM_198428 27241 Hs.372360 NM_014451 ENSG00000122507 BBS9 B1|C18|D1|PTHB1 Bardet-Biedl syndrome 9 protein-coding 373-119 chr14 78428838 78429074 + 2 NA intron (NM_004796, intron 1 of 16) MLT2B4|LTR|ERVL 25237 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 188-189 chr7 13821874 13822003 + 2 NA Intergenic Intergenic 164576 NM_001163150 2115 Hs.22634 NM_004956 ENSG00000006468 ETV1 ER81 ETS variant 1 protein-coding 291-276 chr3 1045864 1046082 + 2 NA Intergenic MER110|LTR|ERV1 -47051 NM_001349353 27255 Hs.387300 NM_014461 ENSG00000134115 CNTN6 NB3 contactin 6 protein-coding 374-81 chr12 130287759 130288042 + 2 NA Intergenic Intergenic -49987 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 515-114 chr2 79550750 79551105 + 2 NA intron (NM_001282598, intron 1 of 17) intron (NM_001282598, intron 1 of 17) 27744 NM_001282598 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 210-265 chr7 40208312 40208472 + 2 NA intron (NM_024728, intron 6 of 14) intron (NM_024728, intron 6 of 14) 73416 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 855-13 chr14 39703845 39704453 + 2 NA Intergenic L1PB3|LINE|L1 -271649 NM_203301 254170 Hs.146632 NM_203301 ENSG00000165355 FBXO33 BMND12|Fbx33|c14_5247 F-box protein 33 protein-coding 538-199 chr5 85273856 85274383 + 2 NA Intergenic MIRb|SINE|MIR -889239 NM_005711 10085 Hs.482730 NM_005711 ENSG00000164176 EDIL3 DEL1 EGF like repeats and discoidin domains 3 protein-coding 415-217 chr5 68488511 68488802 + 2 NA Intergenic L1MA9|LINE|L1 196079 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 240-195 chr18 72179432 72179653 + 2 NA Intergenic Intergenic 364800 NM_182511 147381 Hs.569851 NM_182511 ENSG00000141668 CBLN2 - cerebellin 2 precursor protein-coding 395-204 chr21 28607794 28608143 + 2 NA Intergenic Intergenic 68650 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 149-16 chr10 74463830 74463951 + 2 NA intron (NM_001369124, intron 6 of 9) intron (NM_001369124, intron 6 of 9) 65434 NR_120673 102723439 NR_120673 LOC102723439 - uncharacterized LOC102723439 ncRNA 562-153 chr3 186386219 186386593 + 2 NA Intergenic Intergenic -24172 NM_001346 1608 Hs.683449 NM_001346 ENSG00000058866 DGKG DAGK3|DGK-GAMMA diacylglycerol kinase gamma protein-coding 244-36 chr10 70242249 70242418 + 2 NA Intergenic L1MB3|LINE|L1 -8904 NM_021129 5464 Hs.437403 NM_021129 ENSG00000180817 PPA1 HEL-S-66p|IOPPP|PP|PP1|SID6-8061 pyrophosphatase (inorganic) 1 protein-coding 272-205 chr2 107172804 107172993 + 2 NA intron (NR_049853, intron 2 of 3) L1MC3|LINE|L1 176627 NR_049853 100847045 NR_049853 ENSG00000283146 MIR548AU - microRNA 548au ncRNA 360-84 chr12 31507681 31507923 + 2 NA intron (NM_001308339, intron 1 of 22) MIRc|SINE|MIR -82121 NR_046909 100874249 Hs.627628 NR_046909 ENSG00000255867 DENND5B-AS1 - DENND5B antisense RNA 1 ncRNA 708-78 chr8 36133858 36134226 + 2 NA Intergenic Intergenic -423722 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 288-201 chr2 105177261 105177542 + 2 NA Intergenic Intergenic 33288 NR_136172 105373984 Hs.570237 NR_136172 ENSG00000226508 LINC01918 - long intergenic non-protein coding RNA 1918 ncRNA 281-292 chr3 114266537 114266793 + 2 NA Intergenic L1PB1|LINE|L1 -27363 NM_173799 201633 Hs.421750 NM_173799 ENSG00000181847 TIGIT VSIG9|VSTM3|WUCAM T cell immunoreceptor with Ig and ITIM domains protein-coding 454-149 chr2 59747489 59747726 + 2 NA Intergenic Intergenic 529899 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 349-86 chr10 121049936 121050220 + 2 NA Intergenic Intergenic 198716 NM_018117 55717 Hs.144447 NM_018117 ENSG00000120008 WDR11 BRWD2|DR11|HH14|SRI1|WDR15 WD repeat domain 11 protein-coding 378-157 chr16 26404653 26404963 + 2 NA Intergenic Intergenic 379571 NR_036146 100422923 NR_036146 ENSG00000265005 MIR548W - microRNA 548w ncRNA 414-238 chr4 80532058 80532359 + 2 NA intron (NM_152770, intron 2 of 5) intron (NM_152770, intron 2 of 5) 196488 NM_152770 255119 Hs.527104 NM_152770 ENSG00000197826 CFAP299 C4orf22 cilia and flagella associated protein 299 protein-coding 335-422 chr5 39666587 39666768 + 2 NA Intergenic MER2|DNA|TcMar-Tigger 146246 NR_104632 101926940 Hs.436359 NR_104632 ENSG00000271334 LINC02104 - long intergenic non-protein coding RNA 2104 ncRNA 397-49 chr11 58730442 58730738 + 2 NA intron (NM_201648, intron 1 of 5) intron (NM_201648, intron 1 of 5) 1353 NM_201648 10249 Hs.145384 NM_005838 ENSG00000149124 GLYAT ACGNAT|CAT|GAT glycine-N-acyltransferase protein-coding 350-141 chr14 78797495 78797789 + 2 NA intron (NR_073547, intron 8 of 20) L1M4a2|LINE|L1 393923 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 467-113 chr18 7326781 7327093 + 2 NA Intergenic L2a|LINE|L2 95833 NM_001105581 339291 Hs.647588 NM_001105581 ENSG00000206422 LRRC30 - leucine rich repeat containing 30 protein-coding 304-278 chr2 152529867 152530107 + 2 NA intron (NM_052905, intron 2 of 25) intron (NM_052905, intron 2 of 25) 187474 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 242-95 chr13 76063027 76063204 + 2 NA Intergenic L1MEd|LINE|L1 -127983 NR_047491 100861545 Hs.638962 NR_047491 ENSG00000261206 LINC00561 - long intergenic non-protein coding RNA 561 ncRNA 226-250 chr4 35836273 35836448 + 2 NA Intergenic Intergenic 407579 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 227-195 chr2 204342611 204342815 + 2 NA Intergenic Intergenic -202762 NM_057177 117583 Hs.657382 NM_057177 ENSG00000116117 PARD3B ALS2CR19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 357-112 chr14 45922188 45922395 + 2 NA Intergenic L1ME1|LINE|L1 -141868 NR_102701 100506412 Hs.207545 NR_102699 ENSG00000258700 LINC00871 - long intergenic non-protein coding RNA 871 ncRNA 318-100 chr11 34900160 34900393 + 2 NA intron (NM_015957, intron 1 of 6) HUERS-P3-int|LTR|ERV1 -15854 NM_001166158 8050 Hs.502315 NM_003477 ENSG00000110435 PDHX DLDBP|E3BP|OPDX|PDHXD|PDX1|proX pyruvate dehydrogenase complex component X protein-coding 306-466 chr7 38544808 38545026 + 2 NA intron (NM_001635, intron 1 of 20) intron (NM_001635, intron 1 of 20) 86456 NM_001635 273 Hs.592182 NM_001635 ENSG00000078053 AMPH AMPH1 amphiphysin protein-coding 228-19 chr1 158906896 158907111 + 2 NA Intergenic Intergenic -24549 NM_198928 149628 Hs.710248 NM_152501 ENSG00000163564 PYHIN1 IFIX pyrin and HIN domain family member 1 protein-coding 302-205 chr2 40002155 40002371 + 2 NA intron (NR_038441, intron 2 of 4) intron (NR_038441, intron 2 of 4) 84629 NR_038441 100128590 Hs.744988 NR_038441 ENSG00000227028 SLC8A1-AS1 - SLC8A1 antisense RNA 1 ncRNA 364-344 chr5 53733504 53733774 + 2 NA Intergenic L1MC4|LINE|L1 86043 NR_147168 105378966 Hs.570949 NR_147167 LINC02105 - long intergenic non-protein coding RNA 2105 ncRNA 216-210 chr3 28817598 28817780 + 2 NA Intergenic L1ME3|LINE|L1 242411 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 240-331 chr4 126024125 126024274 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 516940 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 594-76 chr2 161480447 161480856 + 2 NA Intergenic L1MA5A|LINE|L1 27251 NR_077058 285116 Hs.470435 NR_077058 AHCTF1P1 AHCTF1P|ELYS-like AT-hook containing transcription factor 1 pseudogene 1 pseudo 373-22 chr1 107035840 107036060 + 2 NA Intergenic LOR1b|LTR|ERV1 -20724 NM_018137 55170 Hs.26006 NM_018137 ENSG00000198890 PRMT6 HRMT1L6 protein arginine methyltransferase 6 protein-coding 375-376 chr7 41866262 41866531 + 2 NA Intergenic MSTD-int|LTR|ERVL-MaLR -163306 NM_002192 3624 Hs.28792 NM_002192 ENSG00000122641 INHBA EDF|FRP inhibin subunit beta A protein-coding 386-241 chr3 87742928 87743297 + 2 NA Intergenic HERVL40-int|LTR|ERVL -49594 NM_001322210 3355 Hs.248136 NM_000866 ENSG00000179097 HTR1F 5-HT-1F|5-HT1F|5HT6|HTR1EL|MR77 5-hydroxytryptamine receptor 1F protein-coding 231-357 chr8 108844886 108845075 + 2 NA Intergenic LTR54B|LTR|ERV1 -57386 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 298-409 chr6 131590010 131590271 + 2 NA intron (NM_015979, intron 28 of 30) intron (NM_015979, intron 28 of 30) 16914 NM_001244438 383 Hs.440934 NM_000045 ENSG00000118520 ARG1 - arginase 1 protein-coding 477-87 chr14 44560144 44560531 + 2 NA Intergenic Intergenic 52928 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 244-211 chr22 27694483 27694708 + 2 NA Intergenic Intergenic 107161 NM_002430 4330 Hs.268515 NM_002430 ENSG00000169184 MN1 MGCR|MGCR1|MGCR1-PEN|dJ353E16.2 MN1 proto-oncogene, transcriptional regulator protein-coding 174-9 chr1 198017348 198017509 + 2 NA Intergenic Intergenic 100056 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 349-26 chr1 113155222 113155534 + 2 NA Intergenic L1MC1|LINE|L1 50875 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 296-320 chr3 183605271 183605421 + 2 NA Intergenic FLAM_C|SINE|Alu -30277 NM_001349417 54800 Hs.407709 NM_017644 ENSG00000114796 KLHL24 DRE1|EBSSH|KRIP6 kelch like family member 24 protein-coding 331-135 chr13 54693820 54694001 + 2 NA Intergenic MER52-int|LTR|ERV1 -381862 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 414-261 chr5 25168839 25169210 + 2 NA intron (NR_147006, intron 1 of 4) L1PA16|LINE|L1 21632 NR_147006 105374694 NR_147006 ENSG00000251273 LINC02228 - long intergenic non-protein coding RNA 2228 ncRNA 353-278 chr20 14671326 14671563 + 2 NA intron (NM_001351663, intron 4 of 17) intron (NM_001351663, intron 4 of 17) 117060 NR_104193 140848 Hs.570367 NR_104193 ENSG00000227927 MACROD2-IT1 C20orf68|NCRNA00227|bA467D7.4 MACROD2 intronic transcript 1 ncRNA 364-75 chr10 116445652 116445969 + 2 NA intron (NM_001011709, intron 4 of 11) intron (NM_001011709, intron 4 of 11) 17963 NM_001011709 119548 Hs.276724 NM_001011709 ENSG00000203837 PNLIPRP3 - pancreatic lipase related protein 3 protein-coding 597-40 chr12 83711355 83711696 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR 1024370 NM_001320322 160335 Hs.577775 NM_152588 ENSG00000179104 TMTC2 IBDBP1 transmembrane O-mannosyltransferase targeting cadherins 2 protein-coding 227-200 chr20 15085074 15085269 + 2 NA intron (NM_001351663, intron 5 of 17) L1M4|LINE|L1 -111669 NM_001351664 140733 Hs.661576 NM_080676 ENSG00000172264 MACROD2 C20orf133|C2orf133 mono-ADP ribosylhydrolase 2 protein-coding 245-354 chr8 120195933 120196119 + 2 NA intron (NM_021110, intron 5 of 47) intron (NM_021110, intron 5 of 47) 70924 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 735-45 chr2 102159148 102159719 + 2 NA intron (NM_001320978, intron 3 of 11) L1M4|LINE|L1 5492 NM_001320984 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 260-145 chr15 57484047 57484295 + 2 NA intron (NM_032866, intron 8 of 18) L1MD1|LINE|L1 107666 NM_001252335 84952 Hs.148989 NM_032866 ENSG00000128849 CGNL1 JACOP|PCING cingulin like 1 protein-coding 316-20 chr1 111698323 111698550 + 2 NA intron (NM_001370216, intron 4 of 7) AluJr4|SINE|Alu 33642 NM_001370217 5906 Hs.190334 NM_002884 ENSG00000116473 RAP1A C21KG|G-22K|KREV-1|KREV1|RAP1|SMGP21 RAP1A, member of RAS oncogene family protein-coding 467-231 chr5 104516810 104517166 + 2 NA Intergenic Intergenic -582486 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 233-383 chr8 122505012 122505221 + 2 NA intron (NR_131202, intron 2 of 3) L1MC2|LINE|L1 63528 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 370-321 chr3 144905065 144905297 + 2 NA Intergenic HERV9N-int|LTR|ERV1 932100 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 338-121 chr12 21193534 21193771 + 2 NA intron (NM_006446, intron 7 of 14) MSTB-int|LTR|ERVL-MaLR 62458 NM_006446 10599 Hs.449738 NM_006446 ENSG00000134538 SLCO1B1 HBLRR|LST-1|LST1|OATP-C|OATP1B1|OATP2|OATPC|SLC21A6 solute carrier organic anion transporter family member 1B1 protein-coding 257-302 chr4 67263104 67263285 + 2 NA Intergenic Intergenic 158806 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 368-39 chr10 15124964 15125213 + 2 NA intron (NM_001308295, intron 9 of 12) MIR3|SINE|MIR 27733 NM_001097590 10557 Hs.94986 NM_006414 ENSG00000152464 RPP38 - ribonuclease P/MRP subunit p38 protein-coding 196-106 chr19 36476354 36476508 + 2 NA intron (NM_001145345, intron 2 of 4) intron (NM_001145345, intron 2 of 4) 13004 NM_032838 84924 Hs.533939 NM_032838 ENSG00000186017 ZNF566 - zinc finger protein 566 protein-coding 125-39 chr3 180741062 180741154 + 2 NA intron (NR_109986, intron 7 of 13) intron (NR_109986, intron 7 of 13) -61619 NM_181426 339829 Hs.712820 NM_181426 ENSG00000284862 CCDC39 CILD14|FAP59 coiled-coil domain containing 39 protein-coding 317-192 chr17 73554727 73555002 + 2 NA intron (NM_001144952, intron 1 of 44) intron (NM_001144952, intron 1 of 44) 41181 NR_135635 101928251 Hs.434726 NR_135635 ENSG00000264985 LOC101928251 - uncharacterized LOC101928251 ncRNA 342-140 chr14 50711588 50711789 + 2 NA Intergenic L3|LINE|CR1 -43382 NM_021818 60485 Hs.642842 NM_021818 ENSG00000151748 SAV1 SAV|WW45|WWP4 salvador family WW domain containing protein 1 protein-coding 396-71 chr11 34984427 34984722 + 2 NA exon (NM_001135024, exon 9 of 11) exon (NM_001135024, exon 9 of 11) 42737 NR_039836 100616437 NR_039836 ENSG00000251862 MIR1343 - microRNA 1343 ncRNA 177-171 chr9 114113743 114113875 + 2 NA Intergenic Intergenic -14752 NM_138424 113220 Hs.28149 NM_138424 ENSG00000136883 KIF12 - kinesin family member 12 protein-coding 265-121 chr15 62548936 62549157 + 2 NA Intergenic Intergenic 96135 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 1255-5 chr2 4750071 4751047 + 2 NA Intergenic Intergenic -94337 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 715-83 chr7 64641556 64642099 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -24256 NM_001282359 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 297-511 chr9 77074016 77074217 + 2 NA Intergenic Intergenic 54461 NM_001013735 442425 Hs.553843 NM_001013735 ENSG00000204612 FOXB2 bA159H20.4 forkhead box B2 protein-coding 760-8 chr10 57913456 57914035 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 354149 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 286-73 chr11 79857103 79857368 + 2 NA Intergenic Intergenic -416205 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 361-268 chr22 47908289 47908487 + 2 NA Intergenic Intergenic 276714 NR_122046 284930 Hs.407567 NR_122046 ENSG00000224271 LOC284930 - uncharacterized LOC284930 ncRNA 289-133 chr14 32755881 32756139 + 2 NA intron (NM_004274, intron 11 of 13) L1MA8|LINE|L1 -182869 NM_001164749 64067 Hs.657892 NM_022123 ENSG00000151322 NPAS3 MOP6|PASD6|bHLHe12 neuronal PAS domain protein 3 protein-coding 374-46 chr11 31075548 31075768 + 2 NA intron (NM_001367979, intron 18 of 38) L1PB4|LINE|L1 -82972 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 437-214 chr5 27848476 27848759 + 2 NA Intergenic L1PA17|LINE|L1 376325 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 358-295 chr3 84032336 84032668 + 2 NA Intergenic L1PA13|LINE|L1 837073 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 492-15 chr1 215196574 215197020 + 2 NA intron (NM_001017424, intron 6 of 6) intron (NM_001017424, intron 6 of 6) 114060 NM_001017425 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 260-47 chr10 48937557 48937759 + 2 NA intron (NM_020945, intron 47 of 61) intron (NM_020945, intron 47 of 61) -23423 NM_001006939 474354 Hs.202438 NM_001006939 ENSG00000165383 LRRC18 UNQ933|UNQ9338|VKGE9338 leucine rich repeat containing 18 protein-coding 291-319 chr4 55589765 55589977 + 2 NA intron (NM_152401, intron 1 of 5) MER34C_|LTR|ERV1 2374 NM_152401 132954 Hs.223712 NM_152401 ENSG00000163440 PDCL2 GCPHLP phosducin like 2 protein-coding 278-458 chr9 93732357 93732505 + 2 NA Intergenic L1MC2|LINE|L1 -86926 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 211-207 chr4 65426927 65427129 + 2 NA intron (NM_001281767, intron 5 of 16) intron (NM_001281767, intron 5 of 16) 242460 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 294-256 chr20 12976230 12976408 + 2 NA Intergenic Intergenic -23800 NR_109868 101929486 Hs.548761 NR_109868 ENSG00000233048 LINC01722 - long intergenic non-protein coding RNA 1722 ncRNA 218-234 chr4 23312650 23312815 + 2 NA Intergenic Intergenic 568560 NM_001330753 10891 Hs.527078 NM_013261 ENSG00000109819 PPARGC1A LEM6|PGC-1(alpha)|PGC-1alpha|PGC-1v|PGC1|PGC1A|PPARGC1 PPARG coactivator 1 alpha protein-coding 392-268 chr5 178757646 178757931 + 2 NA Intergenic MLT2B1|LTR|ERVL -27129 NM_001324339 6940 Hs.484324 NM_005649 ENSG00000169131 ZNF354A EZNF|HEL104|HKL1|KID-1|KID1|TCF17 zinc finger protein 354A protein-coding 289-55 chr10 53921179 53921450 + 2 NA intron (NM_001354411, intron 26 of 34) intron (NM_001354411, intron 26 of 34) -564916 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 194-106 chr2 237078239 237078391 + 2 NA Intergenic L1MB7|LINE|L1 -7126 NM_198189 10920 Hs.531713 NM_006710 ENSG00000198612 COPS8 COP9|CSN8|SGN8 COP9 signalosome subunit 8 protein-coding 677-68 chr5 106650376 106650920 + 2 NA Intergenic Intergenic 360366 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 523-236 chr5 166717565 166718031 + 2 NA Intergenic Intergenic 208572 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 929-7 chr11 99118108 99118852 + 2 NA intron (NM_001243270, intron 1 of 23) intron (NM_001243270, intron 1 of 23) 97531 NM_014361 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 266-13 chr1 115258146 115258308 + 2 NA Intergenic LTR8B|LTR|ERV1 -24807 NR_157569 112840934 NR_157569 NGF-AS1 - NGF antisense RNA 1 ncRNA 288-122 chr14 84952481 84952651 + 2 NA Intergenic Intergenic -319366 NR_145983 26843 NR_145983 SNORD3P3 RNU3P3|U3|U3.5|u3.7 small nucleolar RNA, C/D box 3 pseudogene 3 snoRNA 322-115 chr12 13919368 13919673 + 2 NA intron (NM_000834, intron 1 of 12) intron (NM_000834, intron 1 of 12) 60836 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 233-23 chr1 220495430 220495614 + 2 NA Intergenic Intergenic -32614 NM_001286128 4139 Hs.497806 NM_018650 ENSG00000116141 MARK1 MARK|Par-1c|Par1c microtubule affinity regulating kinase 1 protein-coding 448-68 chr12 128499176 128499556 + 2 NA intron (NM_001136103, intron 2 of 8) L1MA4|LINE|L1 205274 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 337-562 chr8 131694714 131694937 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR -209268 NR_136616 23167 Hs.204564 NM_015137 ENSG00000132294 EFR3A - EFR3 homolog A protein-coding 302-107 chr12 81952994 81953266 + 2 NA promoter-TSS (NR_110089) promoter-TSS (NR_110089) -589 NR_110089 101928449 Hs.737488 NR_110089 ENSG00000257747 LINC02426 - long intergenic non-protein coding RNA 2426 ncRNA 252-289 chr4 35335987 35336163 + 2 NA Intergenic Intergenic 907864 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 523-61 chr12 16486558 16486937 + 2 NA Intergenic Intergenic 118632 NM_001243611 55885 Hs.504908 NM_018640 ENSG00000048540 LMO3 RBTN3|RBTNL2|RHOM3|Rhom-3 LIM domain only 3 protein-coding 252-25 chr1 213284939 213285132 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR 233794 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 268-183 chr2 22757969 22758147 + 2 NA Intergenic Intergenic 221579 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 157-122 chr7 88826511 88826602 + 2 NA intron (NM_181646, intron 1 of 3) intron (NM_181646, intron 1 of 3) -30819 NM_152706 219557 Hs.112877 NM_152706 ENSG00000164645 TEX47 C7orf62 testis expressed 47 protein-coding 305-248 chr2 46373753 46374007 + 2 NA intron (NM_001430, intron 7 of 15) MIRb|SINE|MIR 20287 NR_146999 105374582 Hs.570163 NR_146999 ENSG00000228100 LINC01820 - long intergenic non-protein coding RNA 1820 ncRNA 280-445 chr9 106190014 106190286 + 2 NA Intergenic L1MA3|LINE|L1 -410778 NR_107048 102465995 NR_107048 ENSG00000277889 MIR8081 hsa-mir-8081 microRNA 8081 ncRNA 112-49 chr8 46057115 46057225 + 2 NA Intergenic ALR/Alpha|Satellite|centr 560473 NR_146077 389652 NR_146077 ENSG00000248498 ASNSP1 ASNSL1 asparagine synthetase pseudogene 1 pseudo 270-444 chrX 74151163 74151423 + 2 NA intron (NR_028379, intron 5 of 6) L1PREC2|LINE|L1 67168 NR_030398 693122 NR_030398 ENSG00000202566 MIR421 MIRN421|hsa-mir-421 microRNA 421 ncRNA 464-214 chr6 63117661 63117940 + 2 NA Intergenic Intergenic 202177 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 430-297 chr7 108984084 108984412 + 2 NA Intergenic L2a|LINE|L2 -99661 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 341-540 chr8 126197654 126197947 + 2 NA Intergenic Intergenic -127695 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 527-9 chr1 112084281 112084631 + 2 NA Intergenic Intergenic 93920 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 358-349 chr4 133274482 133274768 + 2 NA Intergenic L1ME3A|LINE|L1 125331 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 389-177 chr2 79150358 79150562 + 2 NA Intergenic L1PA15|LINE|L1 9293 NM_138938 5068 Hs.567312 NM_002580 ENSG00000172016 REG3A HIP|HIP/PAP|INGAP|PAP|PAP-H|PAP1|PBCGF|REG-III|REG3 regenerating family member 3 alpha protein-coding 378-89 chr11 91844371 91844563 + 2 NA Intergenic Intergenic -380567 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 476-116 chr18 1177656 1177972 + 2 NA Intergenic L1MB1|LINE|L1 181815 NR_023927 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 475-145 chr2 137799765 137800162 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 127969 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 284-238 chr20 56032227 56032391 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -26790 NM_080617 140689 Hs.126141 NM_080617 ENSG00000054803 CBLN4 CBLNL1 cerebellin 4 precursor protein-coding 122-37 chr3 171225427 171225531 + 2 NA intron (NM_001161563, intron 3 of 31) MER105|DNA|hAT-Charlie -118720 NR_030295 693154 NR_030295 ENSG00000207963 MIR569 MIRN569|hsa-mir-569 microRNA 569 ncRNA 427-232 chr6 134202659 134202985 + 2 NA intron (NM_001143676, intron 3 of 13) L1MEf|LINE|L1 -24961 NM_001143677 6446 Hs.510078 NM_005627 ENSG00000118515 SGK1 SGK serum/glucocorticoid regulated kinase 1 protein-coding 328-199 chr16 76742164 76742388 + 2 NA Intergenic L1MB4|LINE|L1 107278 NR_110934 101928203 Hs.737035 NR_110934 ENSG00000250514 LINC02125 - long intergenic non-protein coding RNA 2125 ncRNA 531-163 chr3 131140973 131141286 + 2 NA intron (NM_001353032, intron 7 of 14) intron (NM_001353032, intron 7 of 14) 113401 NM_001321223 79858 Hs.657336 NM_024800 ENSG00000114670 NEK11 - NIMA related kinase 11 protein-coding 370-63 chr10 101195060 101195370 + 2 NA Intergenic Intergenic 18893 NR_120620 101927396 Hs.551648 NR_120620 ENSG00000237579 LINC01514 - long intergenic non-protein coding RNA 1514 ncRNA 404-181 chr2 197937783 197938111 + 2 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 133354 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 159-64 chr4 42782609 42782738 + 2 NA Intergenic L1M5|LINE|L1 -110593 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 306-26 chr1 114260459 114260629 + 2 NA Intergenic Intergenic -106675 NM_001253772 148281 Hs.370963 NM_205848 ENSG00000134207 SYT6 sytVI synaptotagmin 6 protein-coding 234-330 chr5 171761015 171761164 + 2 NA Intergenic MIRc|SINE|MIR -24783 NM_001289970 644994 Hs.591740 NM_001289970 ENSG00000185662 SMIM23 C5orf50 small integral membrane protein 23 protein-coding 240-9 chr1 60336743 60336938 + 2 NA Intergenic Intergenic -263070 NM_152377 127795 Hs.47385 NM_152377 ENSG00000162598 C1orf87 CREF chromosome 1 open reading frame 87 protein-coding 680-8 chr1 105979513 105980076 + 2 NA intron (NR_146609, intron 5 of 5) intron (NR_146609, intron 5 of 5) 48459 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 320-413 chr5 4448199 4448481 + 2 NA Intergenic L1ME1|LINE|L1 -325141 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 248-99 chr13 74563636 74563826 + 2 NA Intergenic Intergenic 10888 NR_034024 338864 Hs.97408 NR_034024 ENSG00000236678 LINC00347 - long intergenic non-protein coding RNA 347 ncRNA 307-220 chr19 53318644 53318911 + 2 NA Intergenic MER101-int|LTR|ERV1 -14942 NM_001321524 91664 Hs.720672 NM_138374 ENSG00000213799 ZNF845 - zinc finger protein 845 protein-coding 376-210 chr20 16639428 16639694 + 2 NA Intergenic LTR39|LTR|ERV1 -66113 NM_001199865 55614 Hs.101774 NM_024704 ENSG00000089177 KIF16B C20orf23|KISC20ORF|SNX23 kinesin family member 16B protein-coding 268-46 chr10 45155408 45155618 + 2 NA promoter-TSS (NR_024472) promoter-TSS (NR_024472) 851 NR_033891 338579 Hs.666134 NR_033891 ANKRD30BP3 - ankyrin repeat domain 30B pseudogene 3 pseudo 493-123 chr18 80087466 80087819 + 2 NA Intergenic Intergenic 20386 NR_103445 100506070 Hs.593610 NR_103445 ENSG00000261126 RBFADN - RBFA downstream neighbor ncRNA 306-410 chr5 141402577 141402780 + 2 NA promoter-TSS (NM_018921) promoter-TSS (NM_018921) -275 NM_032089 56107 Hs.368160 NM_018921 ENSG00000261934 PCDHGA9 PCDH-GAMMA-A9 protocadherin gamma subfamily A, 9 protein-coding 365-294 chr4 82102855 82103146 + 2 NA Intergenic Intergenic 270991 NM_031370 3184 Hs.480073 NM_002138 ENSG00000138668 HNRNPD AUF1|AUF1A|HNRPD|P37|hnRNPD0 heterogeneous nuclear ribonucleoprotein D protein-coding 225-166 chr2 140508183 140508357 + 2 NA intron (NM_018557, intron 52 of 90) intron (NM_018557, intron 52 of 90) 78415 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 298-519 chrX 94366322 94366541 + 2 NA Intergenic Intergenic 692225 NM_001171109 286499 Hs.110069 NM_173698 ENSG00000179083 FAM133A CT115 family with sequence similarity 133 member A protein-coding 726-15 chr12 37869086 37869545 + 2 NA Intergenic ALR/Alpha|Satellite|centr -447459 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 328-80 chr11 38847763 38847973 + 2 NA Intergenic L1P4|LINE|L1 199010 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 215-334 chr9 27170375 27170506 + 2 NA intron (NM_001290077, intron 4 of 21) AluJb|SINE|Alu 61299 NM_001290078 7010 Hs.89640 NM_000459 ENSG00000120156 TEK CD202B|GLC3E|TIE-2|TIE2|VMCM|VMCM1 TEK receptor tyrosine kinase protein-coding 221-322 chr9 88054042 88054222 + 2 NA Intergenic MER89|LTR|ERV1 23768 NR_135137 102724156 Hs.633031 NR_135137 LOC102724156 - uncharacterized LOC102724156 ncRNA 444-161 chr3 154669038 154669346 + 2 NA Intergenic Intergenic -239002 NM_001038705 344758 Hs.376338 NM_001038705 ENSG00000174948 GPR149 IEDA|PGR10|R35 G protein-coupled receptor 149 protein-coding 311-483 chr8 5552770 5553047 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR -557994 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 352-232 chr2 52738482 52738676 + 2 NA Intergenic Intergenic -35964 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 348-22 chr1 147839390 147839684 + 2 NA Intergenic FRAM|SINE|Alu -63258 NM_005267 2703 Hs.632441 NM_005267 ENSG00000121634 GJA8 CAE|CAE1|CTRCT1|CX50|CZP1|MP70 gap junction protein alpha 8 protein-coding 343-527 chr8 23333889 23334177 + 2 NA intron (NM_002318, intron 4 of 13) intron (NM_002318, intron 4 of 13) -2175 NR_038323 100507156 Hs.661130 NR_038323 ENSG00000253837 LOC100507156 - uncharacterized LOC100507156 ncRNA 379-392 chrX 51666070 51666388 + 2 NA Intergenic L1MDa|LINE|L1 16602 NM_001355278 441495 Hs.187774 NM_001355278 ENSG00000283093 CENPVL2 CENPVP2 centromere protein V like 2 protein-coding 216-102 chr14 75947966 75948139 + 2 NA intron (NM_015072, intron 31 of 31) L1MEd|LINE|L1 33943 NM_001329938 7043 Hs.592317 NM_003239 ENSG00000119699 TGFB3 ARVD|ARVD1|LDS5|RNHF|TGF-beta3 transforming growth factor beta 3 protein-coding 189-220 chr8 144977730 144977878 + 2 NA non-coding (NR_023392, exon 5 of 5) non-coding (NR_023392, exon 5 of 5) -17061 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 356-112 chr12 88276803 88277011 + 2 NA Intergenic Intergenic 134600 NM_001366574 160418 Hs.331268 NM_181783 ENSG00000139324 TMTC3 LIS8|SMILE transmembrane O-mannosyltransferase targeting cadherins 3 protein-coding 250-402 chr7 82499246 82499408 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -55371 NM_001366867 781 Hs.282151 NM_000722 ENSG00000153956 CACNA2D1 CACNA2|CACNL2A|CCHL2A|LINC01112|lncRNA-N3 calcium voltage-gated channel auxiliary subunit alpha2delta 1 protein-coding 440-41 chr12 17698860 17699259 + 2 NA Intergenic Intergenic 25760 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 225-235 chr4 35884037 35884177 + 2 NA Intergenic Intergenic 359832 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 449-266 chr8 36093452 36093755 + 2 NA Intergenic Intergenic -383283 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 343-98 chr12 17648744 17649073 + 2 NA Intergenic Intergenic -24391 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 259-193 chr2 56581622 56581793 + 2 NA Intergenic Intergenic -395937 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 200-58 chr12 69370398 69370528 + 2 NA intron (NM_006530, intron 4 of 6) intron (NM_006530, intron 4 of 6) 10720 NM_006530 8089 Hs.4029 NM_006530 ENSG00000127337 YEATS4 4930573H17Rik|B230215M10Rik|GAS41|NUBI-1|YAF9 YEATS domain containing 4 protein-coding 235-66 chr11 56089439 56089624 + 2 NA Intergenic L1MC4a|LINE|L1 -3777 NM_001003750 120586 Hs.554524 NM_001003750 ENSG00000172154 OR8I2 OR11-170 olfactory receptor family 8 subfamily I member 2 protein-coding 252-460 chrX 69888243 69888414 + 2 NA intron (NM_001005609, intron 1 of 7) L1M1|LINE|L1 -134529 NR_037494 100500887 NR_037494 ENSG00000211991 MIR676 hsa-mir-676|mir-676 microRNA 676 ncRNA 393-62 chr11 104498571 104498835 + 2 NA Intergenic Intergenic 110599 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 314-187 chr15 58894287 58894519 + 2 NA intron (NR_135042, intron 8 of 18) intron (NR_135042, intron 8 of 18) 39276 NR_135042 79811 Hs.512932 NM_017968 ENSG00000137776 SLTM Met SAFB like transcription modulator protein-coding 394-24 chr1 199596001 199596367 + 2 NA Intergenic L1MA4|LINE|L1 -431526 NM_003822 2494 Hs.33446 NM_003822 ENSG00000116833 NR5A2 B1F|B1F2|CPF|FTF|FTZ-F1|FTZ-F1beta|LRH-1|LRH1|hB1F-2 nuclear receptor subfamily 5 group A member 2 protein-coding 267-206 chr2 126422481 126422703 + 2 NA Intergenic AluSx|SINE|Alu -233343 NM_016815 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 320-286 chr2 171950002 171950312 + 2 NA intron (NM_003642, intron 3 of 10) intron (NM_003642, intron 3 of 10) 27696 NM_003642 8520 Hs.632532 NM_003642 ENSG00000128708 HAT1 KAT1 histone acetyltransferase 1 protein-coding 222-121 chr15 69837147 69837337 + 2 NA intron (NR_026764, intron 1 of 4) MER96B|DNA|hAT-Tip100 2008 NR_026764 414926 Hs.569502 NR_026764 ENSG00000245750 LINC00593 C15orf50 long intergenic non-protein coding RNA 593 ncRNA 540-100 chr18 7462546 7463018 + 2 NA Intergenic Intergenic -1776 NM_001364581 112577592 NM_001364581 LOC112577592 - uncharacterized LOC112577592 protein-coding 190-90 chr2 74761286 74761438 + 2 NA Intergenic Intergenic -71293 NM_000189 3099 Hs.406266 NM_000189 ENSG00000159399 HK2 HKII|HXK2 hexokinase 2 protein-coding 275-221 chr20 7897579 7897818 + 2 NA intron (NM_017545, intron 4 of 7) HAL1|LINE|L1 42760 NM_017545 54363 Hs.193640 NM_017545 ENSG00000101323 HAO1 GOX|GOX1|HAOX1 hydroxyacid oxidase 1 protein-coding 325-61 chr10 56165934 56166110 + 2 NA Intergenic MER1B|DNA|hAT-Charlie 195237 NM_007057 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 383-72 chr12 2602993 2603337 + 2 NA intron (NM_199460, intron 23 of 49).2 MIR3|SINE|MIR 69055 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 403-84 chr13 29987749 29988096 + 2 NA Intergenic L1M2c|LINE|L1 51391 NR_033889 440131 Hs.132371 NM_001010918 LINC00544 - long intergenic non-protein coding RNA 544 ncRNA 352-6 chr1 59501641 59501960 + 2 NA intron (NM_001350794, intron 6 of 14) intron (NM_001350794, intron 6 of 14) -13830 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 131-72 chr7 85326290 85326380 + 2 NA Intergenic Intergenic -94787 NR_134240 105375380 Hs.679608 NR_134240 ENSG00000225128 LINC00972 - long intergenic non-protein coding RNA 972 ncRNA 241-91 chr12 114383466 114383642 + 2 NA intron (NM_000192, intron 7 of 8) L2c|LINE|L2 22590 NM_181486 6910 Hs.381715 NM_000192 ENSG00000089225 TBX5 HOS T-box transcription factor 5 protein-coding 146-94 chr9 99518738 99518849 + 2 NA Intergenic Intergenic -143536 NR_102271 100996569 Hs.745280 NR_102270 ENSG00000271086 NAMA - non-protein coding RNA, associated with MAP kinase pathway and growth arrest ncRNA 383-205 chr2 179385398 179385660 + 2 NA Intergenic L1PREC2|LINE|L1 -120697 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 301 chr1 23361387 23361557 + 2 NA 3' UTR (NM_001077195, exon 4 of 4) 3' UTR (NM_001077195, exon 4 of 4) 6914 NM_030634 80818 Hs.293798 NM_030634 ENSG00000125945 ZNF436 ZNF|Zfp46 zinc finger protein 436 protein-coding 352-96 chr12 31888575 31888769 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -1469 NR_135029 105369723 Hs.736954 NR_135029 ENSG00000255760 LINC02422 - long intergenic non-protein coding RNA 2422 ncRNA 286-162 chr17 57696801 57697062 + 2 NA Intergenic Intergenic 48368 NM_001282544 101927581 Hs.540784 NM_001282544 ENSG00000166329 CCDC182 - coiled-coil domain containing 182 protein-coding 261-213 chr20 42621744 42621908 + 2 NA intron (NM_133170, intron 7 of 31) L2|LINE|L2 -63657 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 206-36 chr10 87913293 87913449 + 2 NA intron (NM_001304718, intron 2 of 8) L1MB3|LINE|L1 49746 NM_001304717 5728 Hs.500466 NM_000314 ENSG00000171862 PTEN 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 phosphatase and tensin homolog protein-coding 272-239 chr20 22753521 22753730 + 2 NA Intergenic Intergenic -68281 NR_146527 105372566 Hs.555065 NR_146527 LINC01747 - long intergenic non-protein coding RNA 1747 ncRNA 316-116 chr11 112662458 112662635 + 2 NA Intergenic L2b|LINE|L2 -106744 NR_104155 387810 Hs.512255 NR_104155 ENSG00000255484 LINC02764 - long intergenic non-protein coding RNA 2764 ncRNA 312-132 chr14 25510971 25511246 + 2 NA Intergenic Intergenic -460811 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 767-37 chr3 179170928 179171599 + 2 NA intron (NM_006218, intron 1 of 20) L1ME2|LINE|L1 22906 NM_006218 5290 Hs.553498 NM_006218 ENSG00000121879 PIK3CA CLAPO|CLOVE|CWS5|MCAP|MCM|MCMTC|PI3K|PI3K-alpha|p110-alpha phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha protein-coding 382-205 chr2 106771284 106771594 + 2 NA Intergenic Intergenic 114589 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 415-141 chr2 186267210 186267479 + 2 NA Intergenic L1PA7|LINE|L1 -181027 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 322-129 chr12 65685494 65685790 + 2 NA Intergenic Intergenic -43270 NR_120433 100507065 Hs.591038 NR_120431 LOC100507065 - uncharacterized LOC100507065 ncRNA 517-42 chr11 24272263 24272647 + 2 NA Intergenic Intergenic -224598 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 641-62 chr2 108201446 108202025 + 2 NA intron (NR_131251, intron 1 of 4) L1M1|LINE|L1 16106 NR_131251 102724774 Hs.626744 NR_131251 ENSG00000225328 LINC01594 TCONS_l2_00015893 long intergenic non-protein coding RNA 1594 ncRNA 277-411 chr8 84061274 84061530 + 2 NA Intergenic L1MA2|LINE|L1 -121385 NM_001354325 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 202-187 chr4 59771252 59771377 + 2 NA Intergenic L3|LINE|CR1 757741 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 283-457 chr9 28265367 28265569 + 2 NA intron (NM_152570, intron 5 of 6) L1MC4|LINE|L1 453837 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 306-383 chr5 19574266 19574467 + 2 NA intron (NM_001349559, intron 7 of 12) L4_A_Mam|LINE|RTE-X 311906 NM_001291957 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 351-518 chr9 103307196 103307439 + 2 NA intron (NR_121578, intron 3 of 9) intron (NR_121578, intron 3 of 9) 17716 NR_121578 101928496 Hs.410860 NR_121578 ENSG00000225564 LINC01492 - long intergenic non-protein coding RNA 1492 ncRNA 271-316 chr4 78400392 78400544 + 2 NA intron (NM_001166133, intron 29 of 41) intron (NM_001166133, intron 29 of 41) 111483 NR_145782 109623453 NR_145782 SNORD161 - small nucleolar RNA, C/D box 161 snoRNA 262-392 chr7 24167477 24167683 + 2 NA Intergenic L1M5|LINE|L1 -116610 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 306-90 chr11 106574287 106574585 + 2 NA Intergenic Intergenic 323029 NR_120551 101928535 Hs.409078 NR_120551 ENSG00000254811 LOC101928535 - uncharacterized LOC101928535 ncRNA 312-300 chr20 57947733 57947940 + 2 NA Intergenic Intergenic -56068 NR_147083 105376992 Hs.736662 NR_147083 ENSG00000275852 LINC01742 - long intergenic non-protein coding RNA 1742 ncRNA 585-144 chr6 153071176 153071648 + 2 NA intron (NM_012419, intron 1 of 4) intron (NM_012419, intron 1 of 4) 59870 NM_012419 26575 Hs.166313 NM_012419 ENSG00000091844 RGS17 RGS-17|RGSZ2|hRGS17 regulator of G protein signaling 17 protein-coding 201-58 chr12 38481587 38481748 + 2 NA Intergenic MIR|SINE|MIR 164893 NM_001308340 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 125-28 chr2 103787161 103787275 + 2 NA Intergenic L3|LINE|CR1 621114 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 386-275 chr5 3553613 3553923 + 2 NA Intergenic Intergenic -17674 NR_033898 285577 Hs.582442 NR_033898 ENSG00000248118 LINC01019 - long intergenic non-protein coding RNA 1019 ncRNA 186-132 chr5 125623494 125623644 + 2 NA Intergenic L1M4a2|LINE|L1 130308 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 303-102 chr13 39322180 39322353 + 2 NA Intergenic Intergenic 280927 NM_005780 10186 Hs.507798 NM_005780 ENSG00000183722 LHFPL6 LHFP LHFPL tetraspan subfamily member 6 protein-coding 243-136 chr14 98657345 98657514 + 2 NA Intergenic L1MEa|LINE|L1 -54184 NR_161367 283598 Hs.448754 NM_182560 ENSG00000176605 C14orf177 - chromosome 14 open reading frame 177 ncRNA 528-46 chr11 5339888 5340336 + 2 NA TTS (NR_038321) TTS (NR_038321) -11396 NM_001004750 390058 Hs.553730 NM_001004750 ENSG00000176239 OR51B6 HOR5'Beta6 olfactory receptor family 51 subfamily B member 6 protein-coding 317-133 chr13 108876144 108876354 + 2 NA intron (NM_015011, intron 12 of 34) intron (NM_015011, intron 12 of 34) 246638 NM_001198950 23026 Hs.656587 NM_015011 ENSG00000041515 MYO16 MYAP3|MYR8|Myo16b|NYAP3|PPP1R107 myosin XVI protein-coding 328-177 chr15 67304524 67304753 + 2 NA intron (NM_022784, intron 5 of 5) intron (NM_022784, intron 5 of 5) -49440 NM_001271885 79719 Hs.254642 NM_024666 ENSG00000103591 AAGAB KPPP1|PPKP1|PPKP1A|p34 alpha and gamma adaptin binding protein protein-coding 262-11 chr1 75097541 75097702 + 2 NA Intergenic Intergenic -30813 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 251-241 chr3 113198382 113198554 + 2 NA Intergenic L1MC4a|LINE|L1 -13089 NM_001301867 91653 Hs.591318 NM_033254 ENSG00000144857 BOC CDON2 BOC cell adhesion associated, oncogene regulated protein-coding 235-379 chr8 137960923 137961127 + 2 NA intron (NR_161374, intron 2 of 7) L2a|LINE|L2 122520 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 258-400 chr8 103450368 103450535 + 2 NA Intergenic Intergenic 35065 NM_015420 25879 Hs.532265 NM_015420 ENSG00000164934 DCAF13 GM83|HSPC064|Sof1|WDSOF1 DDB1 and CUL4 associated factor 13 protein-coding 456-163 chr2 123130424 123130810 + 2 NA Intergenic Intergenic -57136 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 276-107 chr12 28824232 28824419 + 2 NA Intergenic LTR85a|LTR|Gypsy? -324953 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 313-214 chr18 27449296 27449508 + 2 NA Intergenic MER57A1|LTR|ERV1 -106746 NR_134589 105372038 Hs.722107 NR_134589 ENSG00000264151 LOC105372038 - uncharacterized LOC105372038 ncRNA 263-137 chr16 62619031 62619196 + 2 NA Intergenic L1PB4|LINE|L1 -582675 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 325-181 chr15 59859681 59859887 + 2 NA Intergenic Intergenic -144527 NM_012182 27023 Hs.734475 NM_012182 ENSG00000171956 FOXB1 FKH5|HFKH-5 forkhead box B1 protein-coding 316-103 chr11 70650454 70650732 + 2 NA intron (NM_133266, intron 2 of 10) intron (NM_133266, intron 2 of 10) 11248 NM_133266 22941 Hs.268726 NM_012309 ENSG00000162105 SHANK2 AUTS17|CORTBP1|CTTNBP1|ProSAP1|SHANK|SPANK-3 SH3 and multiple ankyrin repeat domains 2 protein-coding 356-416 chr5 155705013 155705253 + 2 NA Intergenic Intergenic -621624 NM_000337 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 682-85 chr6 24665932 24666532 + 2 NA promoter-TSS (NM_001160094) promoter-TSS (NM_001160094) 667 NM_016614 51567 Hs.403010 NM_016614 ENSG00000111802 TDP2 AD022|EAP2|EAPII|TTRAP|dJ30M3.3|hTDP2 tyrosyl-DNA phosphodiesterase 2 protein-coding 152-16 chr11 37803574 37803713 + 2 NA Intergenic Intergenic -134958 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 375-173 chr18 4245572 4245828 + 2 NA intron (NM_001242761, intron 1 of 11) intron (NM_001242761, intron 1 of 11) -18902 NR_036489 284215 Hs.647594 NR_036489 ENSG00000261520 DLGAP1-AS5 - DLGAP1 antisense RNA 5 ncRNA 464-50 chr13 68433488 68433845 + 2 NA Intergenic Intergenic 451659 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 318-514 chr7 64598512 64598730 + 2 NA intron (NR_077227, intron 1 of 2) LOR1-int|LTR|ERV1 16011 NR_033245 641746 Hs.488363 NR_033245 LOC641746 - glycine cleavage system protein H (aminomethyl carrier) pseudogene pseudo 201-259 chr9 78521429 78521535 + 2 NA Intergenic L1M2|LINE|L1 224357 NM_058179 29968 Hs.494261 NM_021154 ENSG00000135069 PSAT1 EPIP|NLS2|PSA|PSAT|PSATD phosphoserine aminotransferase 1 protein-coding 282-456 chr8 102723237 102723428 + 2 NA Intergenic MIR|SINE|MIR 67084 NR_160673 101927245 NR_160672 LOC101927245 - uncharacterized LOC101927245 ncRNA 610-11 chr1 225351641 225352072 + 2 NA exon (NM_001367479, exon 72 of 86) exon (NM_001367479, exon 72 of 86) 76182 NM_002296 3930 Hs.435166 NM_002296 ENSG00000143815 LBR C14SR|DHCR14B|LMN2R|PHA|PHASK|TDRD18 lamin B receptor protein-coding 338-39 chr1 240877657 240877891 + 2 NA intron (NM_001282773, intron 4 of 15) L1M5|LINE|L1 -254498 NR_036069 100422856 NR_036069 ENSG00000265831 MIR3123 mir-3123 microRNA 3123 ncRNA 247-394 chr7 148549542 148549749 + 2 NA Intergenic L1ME1|LINE|L1 -41121 NM_145304 202865 Hs.352212 NM_145304 ENSG00000170279 C7orf33 - chromosome 7 open reading frame 33 protein-coding 264-16 chr1 168818700 168818897 + 2 NA Intergenic Intergenic 31857 NR_024160 79100 Hs.250624 NR_024160 ENSG00000225826 LINC00626 - long intergenic non-protein coding RNA 626 ncRNA 401-255 chr5 33978771 33979003 + 2 NA intron (NM_001012509, intron 2 of 5) MER4D|LTR|ERV1 5806 NM_016180 51151 Hs.278962 NM_016180 ENSG00000164175 SLC45A2 1A1|AIM1|MATP|OCA4|SHEP5 solute carrier family 45 member 2 protein-coding 534-163 chr3 111335742 111336243 + 2 NA Intergenic MER5A1|DNA|hAT-Charlie -206205 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 696-72 chr3 90633781 90634218 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1526378 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 408-113 chr15 53799917 53800284 + 2 NA Intergenic L1MCa|LINE|L1 -37222 NR_102334 256764 Hs.122125 NM_182758 ENSG00000166415 WDR72 AI2A3 WD repeat domain 72 protein-coding 243-334 chr4 103093709 103093925 + 2 NA intron (NM_020139, intron 3 of 9) intron (NM_020139, intron 3 of 9) 6017 NM_020139 56898 Hs.124696 NM_020139 ENSG00000164039 BDH2 DHRS6|EFA6R|PRO20933|SDR15C1|UCPA-OR|UNQ6308 3-hydroxybutyrate dehydrogenase 2 protein-coding 393 chr1 4259941 4260251 + 2 NA Intergenic MIRb|SINE|MIR -151955 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 293-54 chr11 21616878 21617147 + 2 NA Intergenic Intergenic -576073 NM_001142649 203859 Hs.154329 NM_213599 ENSG00000171714 ANO5 GDD1|LGMD2L|LGMDR12|TMEM16E anoctamin 5 protein-coding 346-373 chr5 2949715 2949967 + 2 NA Intergenic Intergenic 31987 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 243-345 chr5 3412124 3412309 + 2 NA Intergenic L2a|LINE|L2 -40600 NR_147000 105374624 Hs.518991 NR_147000 ENSG00000249830 LINC02162 - long intergenic non-protein coding RNA 2162 ncRNA 456-318 chr8 95950531 95950940 + 2 NA Intergenic L1MEd|LINE|L1 -2387 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 248-181 chr2 58917070 58917236 + 2 NA intron (NR_033873, intron 4 of 13) intron (NR_033873, intron 4 of 13) -300555 NR_110219 101927285 Hs.570209 NR_110219 ENSG00000222030 LINC01793 - long intergenic non-protein coding RNA 1793 ncRNA 296-90 chr12 10757297 10757567 + 2 NA intron (NR_120463, intron 1 of 6) L2a|LINE|L2 7198 NR_120463 101928162 Hs.112950 NR_120463 ENSG00000256888 LINC02366 - long intergenic non-protein coding RNA 2366 ncRNA 275-235 chr22 44897756 44898005 + 2 NA intron (NR_134535, intron 5 of 11) AluJr|SINE|Alu 105739 NR_147506 101927551 Hs.683911 NR_147506 ENSG00000230922 LOC101927551 - uncharacterized LOC101927551 ncRNA 471-285 chr9 73425342 73425743 + 2 NA Intergenic Intergenic 273677 NM_000700 301 Hs.494173 NM_000700 ENSG00000135046 ANXA1 ANX1|LPC1 annexin A1 protein-coding 313-462 chr6 22784141 22784353 + 2 NA Intergenic Intergenic -66323 NR_134614 105374972 Hs.484889 NR_134613 LOC105374972 - uncharacterized LOC105374972 ncRNA 280-241 chr21 28711650 28711904 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 172459 NR_026553 118421 Hs.438549 NR_026552 ENSG00000226935 LINC00161 C21orf100|Linc-USP16|NCRNA00161 long intergenic non-protein coding RNA 161 ncRNA 399-229 chr4 67230639 67231030 + 2 NA Intergenic Intergenic 191166 NR_110747 101927237 Hs.435644 NR_110747 ENSG00000250075 LOC101927237 - uncharacterized LOC101927237 ncRNA 113-11 chr12 173554 173655 + 2 NA intron (NM_001170738, intron 13 of 13) intron (NM_001170738, intron 13 of 13) -24435 NR_033859 574538 Hs.589138 NR_033859 ENSG00000249695 LOC574538 - uncharacterized LOC574538 ncRNA 367-221 chr2 139285544 139285895 + 2 NA Intergenic L1PB1|LINE|L1 388395 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 229-353 chr7 28461295 28461493 + 2 NA intron (NM_004904, intron 1 of 10) intron (NM_004904, intron 1 of 10) 25779 NM_004904 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 807-18 chr14 87091096 87091768 + 2 NA Intergenic L1MCb|LINE|L1 185654 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 371-167 chr2 52385141 52385473 + 2 NA intron (NR_135239, intron 2 of 2) intron (NR_135239, intron 2 of 2) 14659 NR_135239 105374596 NR_135239 ENSG00000225444 LINC01867 - long intergenic non-protein coding RNA 1867 ncRNA 505-309 chr8 117138790 117139160 + 2 NA intron (NM_173851, intron 1 of 7) L1M4b|LINE|L1 3980 NM_173851 169026 Hs.532270 NM_173851 ENSG00000164756 SLC30A8 ZNT8|ZnT-8 solute carrier family 30 member 8 protein-coding 330-502 chr7 125188959 125189236 + 2 NA intron (NR_110188, intron 2 of 8) L1M1|LINE|L1 4528 NR_110188 101928283 Hs.566650 NR_110188 ENSG00000224897 LOC101928283 - uncharacterized LOC101928283 ncRNA 656-116 chr7 27670266 27670828 + 2 NA Intergenic Intergenic -7664 NM_152740 11112 Hs.406758 NM_152740 ENSG00000106049 HIBADH NS5ATP1 3-hydroxyisobutyrate dehydrogenase protein-coding 234-179 chr2 114108035 114108166 + 2 NA Intergenic L1MB7|LINE|L1 -128116 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 359-15 chr1 94536740 94537045 + 2 NA intron (NM_001993, intron 2 of 5) MIRb|SINE|MIR 4867 NM_001993 2152 Hs.62192 NM_001993 ENSG00000117525 F3 CD142|TF|TFA coagulation factor III, tissue factor protein-coding 230-227 chr3 23017708 23017878 + 2 NA Intergenic Intergenic 184785 NR_136177 100505877 Hs.125904 NR_136176 ENSG00000233153 UBE2E2-AS1 - UBE2E2 antisense RNA 1 (head to head) ncRNA 370-171 chr16 54886913 54887118 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -38782 NR_134971 101927480 Hs.499208 NR_134971 ENSG00000245694 LOC101927480 - uncharacterized LOC101927480 ncRNA 223-347 chr8 100326087 100326238 + 2 NA intron (NM_001280539, intron 1 of 10) intron (NM_001280539, intron 1 of 10) 10042 NM_001280539 25897 Hs.292882 NM_015435 ENSG00000034677 RNF19A RNF19 ring finger protein 19A, RBR E3 ubiquitin protein ligase protein-coding 381-405 chr9 28642942 28643191 + 2 NA intron (NM_152570, intron 2 of 6) L1MA2|LINE|L1 76239 NM_152570 158038 Hs.444665 NM_152570 ENSG00000174482 LINGO2 LERN3|LRRN6C leucine rich repeat and Ig domain containing 2 protein-coding 386-214 chr21 17098944 17099314 + 2 NA Intergenic Intergenic -339761 NR_037586 100505929 Hs.46707 NM_001005521 ENSG00000232560 LINC01549 C21orf37 long intergenic non-protein coding RNA 1549 ncRNA 351-59 chr11 20283676 20283885 + 2 NA Intergenic MER57A-int|LTR|ERV1 -79905 NM_006410 10553 Hs.90753 NM_006410 ENSG00000109854 HTATIP2 CC3|SDR44U1|TIP30 HIV-1 Tat interactive protein 2 protein-coding 207-153 chr2 158348382 158348532 + 2 NA intron (NM_138803, intron 2 of 13) L1MC5|LINE|L1 108296 NM_138803 130940 Hs.668597 NM_138803 ENSG00000153237 CCDC148 - coiled-coil domain containing 148 protein-coding 196-279 chrX 95123794 95123952 + 2 NA Intergenic MamGypsy2-I|LTR|Gypsy -60647 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 572-33 chr12 2492251 2492769 + 2 NA intron (NM_001129844, intron 6 of 46) intron (NM_001129844, intron 6 of 46) 179710 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 323-157 chr14 87641405 87641711 + 2 NA intron (NR_146551, intron 1 of 2) intron (NR_146551, intron 1 of 2) 13736 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 568-64 chr15 81676476 81676906 + 2 NA Intergenic Intergenic -302478 NM_001080532 342125 Hs.253489 NM_181841 ENSG00000188869 TMC3 - transmembrane channel like 3 protein-coding 270-426 chr9 69314508 69314745 + 2 NA Intergenic Intergenic -7570 NR_047671 100885775 Hs.49768 NR_047671 ENSG00000278910 BANCR LINC00586 BRAF-activated non-protein coding RNA ncRNA 311-234 chr2 6041660 6041932 + 2 NA Intergenic HAL1|LINE|L1 59818 NR_026833 400940 Hs.378814 NM_207479 LOC400940 - uncharacterized LOC400940 ncRNA 343-488 chr6 159264059 159264368 + 2 NA intron (NM_032532, intron 19 of 22) L1ME1|LINE|L1 -94206 NR_121668 101929122 Hs.134215 NR_121668 LOC101929122 - uncharacterized LOC101929122 ncRNA 327-201 chr17 70666518 70666747 + 2 NA Intergenic L1PA13|LINE|L1 497097 NM_000891 3759 Hs.1547 NM_000891 ENSG00000123700 KCNJ2 ATFB9|HHBIRK1|HHIRK1|IRK1|KIR2.1|LQT7|SQT3 potassium voltage-gated channel subfamily J member 2 protein-coding 544-17 chr1 187585398 187585755 + 2 NA Intergenic Intergenic 141948 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 341-239 chr2 35976359 35976541 + 2 NA Intergenic L2|LINE|L2 379120 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 463-14 chr1 91562430 91562764 + 2 NA Intergenic L1MC5|LINE|L1 61489 NM_001134420 8317 Hs.533573 NM_003503 ENSG00000097046 CDC7 CDC7L1|HsCDC7|Hsk1|huCDC7 cell division cycle 7 protein-coding 252-227 chr20 2629135 2629325 + 2 NA intron (NM_080751, intron 17 of 19) L1M4|LINE|L1 -23402 NR_145428 10528 Hs.376064 NM_006392 ENSG00000101361 NOP56 NOL5A|SCA36 NOP56 ribonucleoprotein protein-coding 196-150 chr20 19970571 19970730 + 2 NA intron (NM_001242581, intron 6 of 11) intron (NM_001242581, intron 6 of 11) -46640 NM_181528 51126 Hs.368783 NM_016100 ENSG00000173418 NAA20 NAT3|NAT3P|NAT5|NAT5P|dJ1002M8.1 N(alpha)-acetyltransferase 20, NatB catalytic subunit protein-coding 502-107 chr16 78734166 78734474 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 634666 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 166-37 chr17 48198912 48199015 + 2 NA intron (NM_001075099, intron 4 of 12) intron (NM_001075099, intron 4 of 12) -42452 NR_031607 100302211 NR_031607 ENSG00000221739 MIR1203 MIRN1203|hsa-mir-1203 microRNA 1203 ncRNA 257-46 chr10 73428721 73428876 + 2 NA intron (NM_001024593, intron 1 of 6) intron (NM_001024593, intron 1 of 6) 4763 NM_001024593 118490 Hs.631823 NM_001024593 ENSG00000166343 MSS51 ZMYND17 MSS51 mitochondrial translational activator protein-coding 137-36 chr17 60918423 60918499 + 2 NA intron (NM_001330413, intron 12 of 25) L1MA4A|LINE|L1 240610 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 237-330 chr6 68668923 68669153 + 2 NA intron (NM_001704, intron 3 of 31) (TATG)n|Simple_repeat|Simple_repeat 33756 NM_001704 577 Hs.13261 NM_001704 ENSG00000135298 ADGRB3 BAI3 adhesion G protein-coupled receptor B3 protein-coding 322-121 chr12 37703113 37703353 + 2 NA Intergenic ALR/Alpha|Satellite|centr -613541 NM_001013620 144245 Hs.259305 NM_001013620 ENSG00000175548 ALG10B ALG10|KCR1 ALG10 alpha-1,2-glucosyltransferase B protein-coding 395-10 chr1 85009823 85010023 + 2 NA Intergenic L1PB1|LINE|L1 -12810 NM_001330647 255231 Hs.591446 NM_153259 ENSG00000153898 MCOLN2 TRP-ML2|TRPML2 mucolipin 2 protein-coding 274-12 chr1 113631561 113631764 + 2 NA intron (NM_001142782, intron 9 of 20) intron (NM_001142782, intron 9 of 20) 127493 NM_006608 10745 Hs.655824 NM_006608 ENSG00000116793 PHTF1 PHTF putative homeodomain transcription factor 1 protein-coding 182-90 chr2 80974272 80974427 + 2 NA Intergenic Intergenic 492597 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 364-346 chr5 60509423 60509781 + 2 NA intron (NR_024617, intron 1 of 3) intron (NR_024617, intron 1 of 3) -13316 NM_001364599 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 562-138 chr3 26989908 26990270 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 226434 NM_001304384 152110 Hs.506115 NM_152534 ENSG00000163491 NEK10 - NIMA related kinase 10 protein-coding 681-84 chr8 66242592 66242934 + 2 NA Intergenic Intergenic 50649 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 355-241 chr2 72569410 72569761 + 2 NA intron (NR_135774, intron 7 of 19) MER102b|DNA|hAT-Charlie 256448 NM_001321733 23233 Hs.303454 NM_015189 ENSG00000144036 EXOC6B SEC15B|SEC15L2|SEMDJL3 exocyst complex component 6B protein-coding 597-92 chr3 94416694 94417065 + 2 NA Intergenic Charlie25|DNA|hAT-Charlie 353818 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 364-481 chrX 63031510 63031854 + 2 NA Intergenic L1PB4|LINE|L1 319650 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 327-69 chr10 129798372 129798631 + 2 NA Intergenic L1ME2z|LINE|L1 44873 NR_036179 100422873 NR_036179 ENSG00000266676 MIR4297 - microRNA 4297 ncRNA 338-116 chr11 120334240 120334472 + 2 NA TTS (NM_001198670) TTS (NM_001198670) -2057 NM_001198665 23365 Hs.24598 NM_015313 ENSG00000196914 ARHGEF12 LARG|PRO2792 Rho guanine nucleotide exchange factor 12 protein-coding 147-4 chr1 232481631 232481767 + 2 NA intron (NM_020808, intron 4 of 20) intron (NM_020808, intron 4 of 20) 33909 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 575-2 chr1 36792878 36793383 + 2 NA Intergenic Intergenic 241385 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 242-60 chr11 90827600 90827743 + 2 NA intron (NR_104190, intron 4 of 6) intron (NR_104190, intron 4 of 6) 41531 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 246-228 chr20 7603096 7603270 + 2 NA Intergenic L1MA2|LINE|L1 231575 NR_107029 102465865 NR_107029 ENSG00000278159 MIR8062 hsa-mir-8062 microRNA 8062 ncRNA 550-9 chr1 106340938 106341395 + 2 NA Intergenic L1MC3|LINE|L1 -312913 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 316-34 chr1 177526460 177526725 + 2 NA Intergenic Intergenic -173932 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 248-153 chr17 60306134 60306343 + 2 NA intron (NM_032582, intron 2 of 33) intron (NM_032582, intron 2 of 33) -74593 NR_002999 677681 NR_002999 ENSG00000252577 SCARNA20 ACA66 small Cajal body-specific RNA 20 ncRNA 301-147 chr16 66215360 66215576 + 2 NA Intergenic HAL1M8|LINE|L1 -151223 NM_001795 1003 Hs.76206 NM_001795 ENSG00000179776 CDH5 7B4|CD144 cadherin 5 protein-coding 577-58 chr14 43322574 43322934 + 2 NA Intergenic L1ME1|LINE|L1 1184529 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 313-401 chr4 106543494 106543750 + 2 NA Intergenic L1ME3|LINE|L1 109998 NR_147150 105377355 Hs.253188 NR_147150 ENSG00000249613 LINC02173 - long intergenic non-protein coding RNA 2173 ncRNA 601-61 chr18 5114125 5114559 + 2 NA Intergenic L1MA3|LINE|L1 33160 NR_146900 105371969 Hs.599709 NR_146900 LINC01892 - long intergenic non-protein coding RNA 1892 ncRNA 158-91 chr5 30656881 30657011 + 2 NA Intergenic Intergenic -536740 NM_004932 1004 Hs.124776 NM_004932 ENSG00000113361 CDH6 CAD6|KCAD cadherin 6 protein-coding 386-14 chr1 157440948 157441284 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 111399 NM_001195388 83416 Hs.415950 NM_031281 ENSG00000143297 FCRL5 BXMAS1|CD307|CD307e|FCRH5|IRTA2|PRO820 Fc receptor like 5 protein-coding 129-75 chr8 98610114 98610214 + 2 NA intron (NM_001256313, intron 4 of 8) intron (NM_001256313, intron 4 of 8) 183206 NM_020697 3788 Hs.388045 NM_020697 ENSG00000156486 KCNS2 KV9.2 potassium voltage-gated channel modifier subfamily S member 2 protein-coding 221-116 chr18 2329048 2329207 + 2 NA Intergenic Intergenic 242378 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 361-374 chr5 144442422 144442714 + 2 NA intron (NM_001370487, intron 2 of 2) (TTCT)n|Simple_repeat|Simple_repeat 237177 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 375-24 chr1 211149623 211149911 + 2 NA Intergenic L3|LINE|CR1 -15619 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 346-163 chr15 85960232 85960430 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -119289 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 536-177 chr5 2788922 2789307 + 2 NA Intergenic MLT1F2|LTR|ERVL-MaLR 36983 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 206-134 chr2 194136696 194136877 + 2 NA Intergenic Intergenic -207483 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 297-110 chr12 61756250 61756474 + 2 NA intron (NM_178539, intron 2 of 4) intron (NM_178539, intron 2 of 4) 436477 NM_178539 338811 Hs.269745 NM_178539 ENSG00000198673 TAFA2 FAM19A2|TAFA-2 TAFA chemokine like family member 2 protein-coding 332-293 chr20 32375641 32375900 + 2 NA intron (NM_015338, intron 3 of 11) AluSz6|SINE|Alu 16705 NM_001363734 171023 Hs.374043 NM_015338 ENSG00000171456 ASXL1 BOPS|MDS ASXL transcriptional regulator 1 protein-coding 408-87 chr12 73093599 73093821 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -65480 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 302-285 chr3 68740171 68740360 + 2 NA intron (NM_001005527, intron 4 of 5) intron (NM_001005527, intron 4 of 5) 192282 NM_182522 151647 Hs.187873 NM_182522 ENSG00000163377 TAFA4 FAM19A4|TAFA-4 TAFA chemokine like family member 4 protein-coding 440-256 chr8 136998697 136999068 + 2 NA Intergenic L1MC1|LINE|L1 414706 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 320-33 chr1 186391236 186391453 + 2 NA intron (NM_001164246, intron 6 of 12) intron (NM_001164246, intron 6 of 12) -9228 NM_022375 10896 Hs.679230 NM_022375 ENSG00000262180 OCLM TISR oculomedin protein-coding 389-57 chr11 31994668 31995007 + 2 NA Intergenic Intergenic 46481 NR_120527 100506675 Hs.446169 NR_120526 ENSG00000254584 LOC100506675 - uncharacterized LOC100506675 ncRNA 628-80 chr20 24545718 24546173 + 2 NA intron (NM_024893, intron 2 of 3) intron (NM_024893, intron 2 of 3) 75984 NR_147606 79953 Hs.124638 NM_024893 ENSG00000101463 SYNDIG1 C20orf39|DSPC2|IFITMD5|TMEM90B synapse differentiation inducing 1 protein-coding 385-40 chr10 97648234 97648534 + 2 NA intron (NM_018425, intron 1 of 8) AluJr|SINE|Alu 7698 NM_018425 55361 Hs.25300 NM_018425 ENSG00000155252 PI4K2A PI4KII|PIK42A phosphatidylinositol 4-kinase type 2 alpha protein-coding 335-345 chr3 50684236 50684561 + 2 NA intron (NM_004947, intron 1 of 52) intron (NM_004947, intron 1 of 52) 9318 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 337-420 chr4 172135619 172135899 + 2 NA intron (NM_001034845, intron 2 of 12) (AATAAT)n|Simple_repeat|Simple_repeat -322152 NR_134656 441052 Hs.386236 NR_134656 LOC441052 - uncharacterized LOC441052 ncRNA 302-441 chr8 53661709 53661899 + 2 NA Intergenic MER30|DNA|hAT-Charlie -137839 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 283-480 chrX 99174194 99174377 + 2 NA Intergenic L1PA13|LINE|L1 1235988 NM_020766 57526 Hs.4993 NM_020766 ENSG00000165194 PCDH19 EFMR|EIEE9 protocadherin 19 protein-coding 295-345 chr4 62532702 62532897 + 2 NA Intergenic Intergenic -371034 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 267-248 chr3 28969608 28969848 + 2 NA Intergenic L1MA4A|LINE|L1 311211 NR_109804 100873979 Hs.99391 NR_109804 RBMS3-AS3 - RBMS3 antisense RNA 3 ncRNA 296-40 chr10 33373684 33373855 + 2 NA Intergenic AluSz|SINE|Alu -38864 NM_001330068 8829 Hs.131704 NM_003873 ENSG00000099250 NRP1 BDCA4|CD304|NP1|NRP|VEGF165R neuropilin 1 protein-coding 424-67 chr14 56403339 56403656 + 2 NA Intergenic L1PA17|LINE|L1 -110834 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 286-471 chr8 144986052 144986251 + 2 NA intron (NR_023392, intron 4 of 4) AluY|SINE|Alu -8714 NR_002807 286102 Hs.744580 NR_002807 TMED10P1 S31I125|S31III125|TMED10|TMED10P|TMP21|Tmp-21-I|Tmp21-II|p23|p24delta|p24delta1 transmembrane p24 trafficking protein 10 pseudogene 1 pseudo 414-8 chr1 70882121 70882501 + 2 NA intron (NR_028293, intron 2 of 4) L1PB4|LINE|L1 -164195 NR_038420 100132618 Hs.720513 NR_038420 ZRANB2-AS1 - ZRANB2 antisense RNA 1 ncRNA 247-21 chr1 176617986 176618162 + 2 NA intron (NM_021936, intron 3 of 4) intron (NM_021936, intron 3 of 4) 154899 NM_020318 60676 Hs.187284 NM_020318 ENSG00000116183 PAPPA2 PAPP-A2|PAPP-E|PAPPE|PLAC3 pappalysin 2 protein-coding 161-66 chr3 70714237 70714347 + 2 NA Intergenic L1ME3F|LINE|L1 350632 NM_001349344 27086 Hs.59368 NM_032682 ENSG00000114861 FOXP1 12CC4|HSPC215|MFH|QRF1|hFKH1B forkhead box P1 protein-coding 548-114 chr2 62044589 62044936 + 2 NA intron (NM_001321781, intron 2 of 2) intron (NM_001321781, intron 2 of 2) 139120 NM_152516 150684 Hs.468702 NM_152516 ENSG00000173163 COMMD1 C2orf5|MURR1 copper metabolism domain containing 1 protein-coding 190-113 chr3 5306279 5306399 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -56084 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 587-174 chr8 137983199 137983589 + 2 NA intron (NR_161374, intron 2 of 7) L2|LINE|L2 100151 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 393-14 chr1 78629718 78629990 + 2 NA exon (NM_006820, exon 4 of 9) exon (NM_006820, exon 4 of 9) 9406 NM_006820 10964 Hs.744918 NM_006820 ENSG00000137959 IFI44L C1orf29|GS3686 interferon induced protein 44 like protein-coding 273-19 chr1 118380722 118380948 + 2 NA Intergenic Intergenic -195607 NM_206996 200162 Hs.528821 NM_206996 ENSG00000155761 SPAG17 CT143|PF6 sperm associated antigen 17 protein-coding 286-30 chr10 15982948 15983129 + 2 NA Intergenic L1MC5a|LINE|L1 -122505 NM_001318330 80013 Hs.158870 NM_024948 ENSG00000148481 MINDY3 C10orf97|CARP|DERP5|FAM188A|MST126|MSTP126|my042 MINDY lysine 48 deubiquitinase 3 protein-coding 235-333 chr7 80355696 80355870 + 2 NA Intergenic MIR|SINE|MIR 18656 NR_110075 101927269 Hs.583232 NR_110075 LOC101927269 - uncharacterized LOC101927269 ncRNA 441-286 chrX 123533847 123534189 + 2 NA Intergenic L1MA7|LINE|L1 199034 NM_001081550 57187 Hs.149991 NM_020449 ENSG00000125676 THOC2 CXorf3|MRX12|MRX35|THO2|dJ506G2.1|hTREX120 THO complex 2 protein-coding 335-192 chr17 14276030 14276295 + 2 NA Intergenic L1MB4|LINE|L1 -24919 NR_130138 9953 Hs.48384 NM_006041 ENSG00000125430 HS3ST3B1 3-OST-3B|3OST3B1|h3-OST-3B heparan sulfate-glucosamine 3-sulfotransferase 3B1 protein-coding 279-35 chr10 44923825 44923974 + 2 NA intron (NR_033842, intron 1 of 7) intron (NR_033842, intron 1 of 7) 12562 NM_001123376 643236 Hs.292788 NM_001123376 ENSG00000187783 TMEM72 C10orf127|KSP37 transmembrane protein 72 protein-coding 229-215 chr2 208554063 208554255 + 2 NA intron (NR_136588, intron 1 of 5) L1MC3|LINE|L1 11517 NR_136588 101927960 Hs.159960 NR_136588 LOC101927960 - uncharacterized LOC101927960 ncRNA 225-213 chr3 95738485 95738658 + 2 NA Intergenic Intergenic -55378 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 455-48 chr11 36873554 36873833 + 2 NA Intergenic L1MA1|LINE|L1 -275414 NM_001243786 5897 Hs.714519 NM_000536 ENSG00000175097 RAG2 RAG-2 recombination activating 2 protein-coding 326-505 chr7 93161424 93161656 + 2 NA Intergenic HERV16-int|LTR|ERVL -13155 NM_152703 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 329-416 chr4 93339742 93340001 + 2 NA intron (NM_001286838, intron 7 of 14) THE1D|LTR|ERVL-MaLR -488882 NM_005172 474 Hs.532680 NM_005172 ENSG00000172238 ATOH1 ATH1|HATH1|MATH-1|bHLHa14 atonal bHLH transcription factor 1 protein-coding 370-325 chr4 10766033 10766227 + 2 NA Intergenic MLT2D|LTR|ERVL -81362 NM_052964 116449 Hs.62772 NM_052964 ENSG00000109684 CLNK MIST cytokine dependent hematopoietic cell linker protein-coding 268-22 chr1 218207167 218207389 + 2 NA Intergenic Intergenic -78015 NM_016052 51018 Hs.660109 NM_016052 ENSG00000067533 RRP15 CGI-115|KIAA0507 ribosomal RNA processing 15 homolog protein-coding 310-574 chrX 79814916 79815086 + 2 NA Intergenic L1PA14|LINE|L1 -199752 NM_001109878 50945 Hs.374253 NM_016954 ENSG00000122145 TBX22 ABERS|CLPA|CPX|TBXX|dJ795G23.1 T-box transcription factor 22 protein-coding 514-284 chr8 85371643 85372106 + 2 NA intron (NM_001738, intron 1 of 8) intron (NM_001738, intron 1 of 8) 6239 NM_001291968 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 349-422 chr5 111402311 111402578 + 2 NA intron (NM_001744, intron 5 of 10) intron (NM_001744, intron 5 of 10) -109782 NR_040093 100505678 Hs.745061 NR_040093 ENSG00000246859 STARD4-AS1 - STARD4 antisense RNA 1 ncRNA 426-270 chr7 38027236 38027589 + 2 NA Intergenic L1M5|LINE|L1 106093 NM_001242948 54749 Hs.563491 NM_017549 ENSG00000086289 EPDR1 EPDR|MERP-1|MERP1|UCC1 ependymin related 1 protein-coding 163-109 chr6 107933520 107933639 + 2 NA intron (NM_007214, intron 1 of 20) L1MD3|LINE|L1 24629 NM_007214 11231 Hs.26904 NM_007214 ENSG00000025796 SEC63 DNAJC23|ERdj2|PCLD2|PRO2507|SEC63L SEC63 homolog, protein translocation regulator protein-coding 429-249 chr6 13718694 13719014 + 2 NA Intergenic Intergenic -7019 NM_005493 10048 Hs.708182 NM_005493 ENSG00000010017 RANBP9 BPM-L|BPM90|RANBPM|RanBP7 RAN binding protein 9 protein-coding 301-157 chr17 13397540 13397814 + 2 NA Intergenic Intergenic -90917 NR_146885 105371541 NR_146885 ENSG00000234634 LINC02093 - long intergenic non-protein coding RNA 2093 ncRNA 465-88 chr15 56604851 56605150 + 2 NA Intergenic Intergenic 129086 NM_001002844 54816 Hs.511477 NM_017661 ENSG00000137871 ZNF280D SUHW4|ZNF634 zinc finger protein 280D protein-coding 255-372 chr6 163360139 163360383 + 2 NA Intergenic AluJo|SINE|Alu -13228 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 246-445 chrX 142443527 142443766 + 2 NA Intergenic L1ME4a|LINE|L1 -238356 NM_016249 51438 Hs.123536 NM_016249 ENSG00000046774 MAGEC2 CT10|HCA587|MAGEE1 MAGE family member C2 protein-coding 243-154 chr16 66700230 66700376 + 2 NA Intergenic HAL1|LINE|L1 -3560 NM_178818 146223 Hs.643961 NM_178818 ENSG00000183723 CMTM4 CKLFSF4 CKLF like MARVEL transmembrane domain containing 4 protein-coding 196-240 chr8 3222141 3222272 + 2 NA intron (NM_033225, intron 28 of 69) intron (NM_033225, intron 28 of 69) -493755 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 178-36 chr12 72295631 72295783 + 2 NA intron (NM_013381, intron 2 of 18) intron (NM_013381, intron 2 of 18) -22198 NR_026837 283392 Hs.363603 NM_001025457 ENSG00000236333 TRHDE-AS1 - TRHDE antisense RNA 1 ncRNA 416-9 chr1 90233187 90233472 + 2 NA Intergenic L1MA2|LINE|L1 238219 NM_181781 284695 Hs.306221 NM_181781 ENSG00000162664 ZNF326 ZAN75|ZIRD|Zfp326|dJ871E2.1 zinc finger protein 326 protein-coding 474-235 chr5 94195725 94196117 + 2 NA intron (NM_001145678, intron 20 of 20) LTR16C|LTR|ERVL -84222 NR_028080 83989 Hs.600086 NM_032042 ENSG00000113391 FAM172A C5orf21|Toupee family with sequence similarity 172 member A protein-coding 329-607 chr9 82010539 82010829 + 2 NA Intergenic L2a|LINE|L2 21912 NM_001001670 389763 Hs.209545 NM_001001670 ENSG00000214929 SPATA31D1 FAM75D1 SPATA31 subfamily D member 1 protein-coding 231-176 chr2 117339968 117340155 + 2 NA Intergenic Intergenic -474630 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 373-52 chr10 54522237 54522423 + 2 NA intron (NR_134503, intron 1 of 5) intron (NR_134503, intron 1 of 5) 36100 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 374-371 chr8 9317941 9318230 + 2 NA Intergenic Intergenic -6966 NR_040039 157273 Hs.650222 NR_040039 ENSG00000248538 LOC157273 - uncharacterized LOC157273 ncRNA 208-56 chr12 26571338 26571494 + 2 NA intron (NM_002223, intron 34 of 56) intron (NM_002223, intron 34 of 56) 261778 NM_002223 3709 Hs.512235 NM_002223 ENSG00000123104 ITPR2 ANHD|CFAP48|INSP3R2|IP3R2 inositol 1,4,5-trisphosphate receptor type 2 protein-coding 218-142 chr19 52882179 52882338 + 2 NA intron (NM_001351774, intron 5 of 5) intron (NM_001351774, intron 5 of 5) 15377 NM_001351776 162967 Hs.369632 NM_207333 ENSG00000182986 ZNF320 ZFPL zinc finger protein 320 protein-coding 273-274 chr22 20000999 20001250 + 2 NA intron (NM_001670, intron 2 of 19) intron (NM_001670, intron 2 of 19) 15699 NM_001670 421 Hs.713616 NM_001670 ENSG00000099889 ARVCF - ARVCF delta catenin family member protein-coding 352-403 chr5 16872309 16872565 + 2 NA intron (NM_012334, intron 2 of 40) L1MB2|LINE|L1 63851 NM_012334 4651 Hs.481720 NM_012334 ENSG00000145555 MYO10 - myosin X protein-coding 299-196 chr2 38642658 38642850 + 2 NA Intergenic LTR12C|LTR|ERV1 -23360 NM_138801 130589 Hs.435012 NM_138801 ENSG00000143891 GALM BLOCK25|GLAT|HEL-S-63p|IBD1 galactose mutarotase protein-coding 206-99 chr18 76576290 76576461 + 2 NA Intergenic L1MC1|LINE|L1 -43402 NR_120419 400660 Hs.131718 NR_120419 ENSG00000266256 LINC00683 - long intergenic non-protein coding RNA 683 ncRNA 344-121 chr13 50211181 50211458 + 2 NA intron (NR_109974, intron 2 of 6) intron (NR_109974, intron 2 of 6) 39301 NR_002183 145165 Hs.511834 NM_153290 ST13P4 FAM10A4|FAM10A4P ST13, Hsp70 interacting protein pseudogene 4 pseudo 308-537 chr9 80728533 80728741 + 2 NA Intergenic Intergenic 753614 NR_121212 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 309-527 chr8 34994088 34994254 + 2 NA Intergenic Intergenic 210250 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 712-58 chr3 24348282 24348989 + 2 NA intron (NM_001354709, intron 1 of 10) MER88|LTR|ERVL -145452 NR_046244 644990 Hs.631912 NR_046244 THRB-AS1 - THRB antisense RNA 1 ncRNA 404-261 chr5 117418466 117418822 + 2 NA intron (NR_046089, intron 1 of 5) intron (NR_046089, intron 1 of 5) 3132 NR_046089 728342 Hs.434420 NR_046089 LINC00992 - long intergenic non-protein coding RNA 992 ncRNA 244-264 chr4 71170945 71171152 + 2 NA Intergenic Intergenic -16211 NM_001098484 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 477-255 chr7 15016276 15016587 + 2 NA Intergenic Intergenic -41573 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 374-77 chr12 114558831 114559142 + 2 NA Intergenic L1ME1|LINE|L1 125189 NM_016569 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 460-113 chr18 5217426 5217795 + 2 NA Intergenic L2a|LINE|L2 -19858 NM_001330553 642597 Hs.437160 NM_001145194 ENSG00000231824 AKAIN1 C18orf42 A-kinase anchor inhibitor 1 protein-coding 486-119 chr18 1509105 1509469 + 2 NA Intergenic L1M2|LINE|L1 -149658 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 289-58 chr10 61996634 61996836 + 2 NA intron (NM_032199, intron 3 of 9) intron (NM_032199, intron 3 of 9) -52622 NM_001244638 84159 Hs.535297 NM_032199 ENSG00000150347 ARID5B DESRT|MRF-2|MRF2 AT-rich interaction domain 5B protein-coding 278-16 chr1 176307842 176308042 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR -100656 NM_022457 64326 Hs.523744 NM_022457 ENSG00000143207 COP1 RFWD2|RNF200 COP1 E3 ubiquitin ligase protein-coding 202-234 chr7 20014358 20014509 + 2 NA intron (NR_110114, intron 3 of 5) intron (NR_110114, intron 3 of 5) 125993 NR_110114 101927668 Hs.715900 NR_110114 LOC101927668 - uncharacterized LOC101927668 ncRNA 333-38 chr1 191640820 191641026 + 2 NA Intergenic (TTTCC)n|Simple_repeat|Simple_repeat -412425 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 344-237 chr2 67370569 67370821 + 2 NA Intergenic AluSz6|SINE|Alu -26638 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 766-4 chr10 33965694 33966271 + 2 NA Intergenic Intergenic -193302 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 158-114 chr8 75142930 75143020 + 2 NA Intergenic L1ME3A|LINE|L1 135506 NR_103848 101805492 Hs.571424 NR_103848 CASC9 ESCCAL-1|ESSCAL1|LINC00981|linc-JPH1 cancer susceptibility 9 ncRNA 309-580 chr9 98366233 98366452 + 2 NA intron (NM_005458, intron 12 of 18) intron (NM_005458, intron 12 of 18) -110693 NR_051978 55357 Hs.371016 NM_018421 ENSG00000095383 TBC1D2 PARIS-1|PARIS1|TBC1D2A TBC1 domain family member 2 protein-coding 253-129 chr14 53155972 53156158 + 2 NA intron (NR_110062, intron 1 of 2) intron (NR_110062, intron 1 of 2) 2711 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 243-200 chr2 41547946 41548172 + 2 NA Intergenic Intergenic -329496 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 222-340 chr7 44441227 44441339 + 2 NA intron (NM_015332, intron 2 of 5) intron (NM_015332, intron 2 of 5) 49375 NM_015332 23386 Hs.488171 NM_015332 ENSG00000015676 NUDCD3 NudCL NudC domain containing 3 protein-coding 689-32 chr14 59393271 59393898 + 2 NA Intergenic Intergenic 71796 NM_022571 64582 Hs.647573 NM_022571 ENSG00000181619 GPR135 HUMNPIIY20 G protein-coupled receptor 135 protein-coding 353-505 chr8 4051396 4051573 + 2 NA intron (NM_033225, intron 3 of 69) intron (NM_033225, intron 3 of 69) 943430 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 472-325 chr8 119356193 119356500 + 2 NA Intergenic LTR85b|LTR|Gypsy? 31175 NR_106755 102466162 NR_106755 ENSG00000276479 MIR548AZ hsa-mir-548az microRNA 548az ncRNA 424-143 chr2 145718449 145718801 + 2 NA Intergenic Intergenic -868432 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 332-176 chr16 6996853 6997180 + 2 NA intron (NM_001142334, intron 1 of 13) (ATATGT)n|Simple_repeat|Simple_repeat 223207 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 381-68 chr10 126537705 126538046 + 2 NA intron (NM_001350922, intron 2 of 8) MLT1C|LTR|ERVL-MaLR -16382 NM_001004298 118611 Hs.587663 NM_001004298 ENSG00000154493 C10orf90 FATS|bA422P15.2 chromosome 10 open reading frame 90 protein-coding 349-499 chr8 80151633 80151875 + 2 NA intron (NR_105035, intron 1 of 6) LTR54B|LTR|ERV1 19367 NR_105037 7163 Hs.368433 NM_005079 ENSG00000076554 TPD52 D52|N8L|PC-1|PrLZ|hD52 tumor protein D52 protein-coding 305-216 chr18 37634387 37634660 + 2 NA Intergenic Intergenic -22612 NR_036202 100422857 NR_036202 ENSG00000266530 MIR4318 - microRNA 4318 ncRNA 339-440 chr5 18246596 18246774 + 2 NA Intergenic L1MC2|LINE|L1 439411 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 357-113 chr14 48906679 48906873 + 2 NA Intergenic Intergenic 679604 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 230-146 chr17 15196963 15197149 + 2 NA Intergenic Intergenic 54640 NR_039884 100616125 NR_039884 ENSG00000265110 MIR4731 - microRNA 4731 ncRNA 132-30 chr15 99469313 99469393 + 2 NA Intergenic L1MA8|LINE|L1 -96064 NM_001352617 4205 Hs.268675 NM_005587 ENSG00000068305 MEF2A ADCAD1|RSRFC4|RSRFC9|mef2 myocyte enhancer factor 2A protein-coding 252-268 chr3 94940864 94941030 + 2 NA intron (NR_015400, intron 1 of 7) L1PA8A|LINE|L1 2684 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 414-219 chr3 156916608 156916896 + 2 NA intron (NM_001004316, intron 3 of 12) L1PREC2|LINE|L1 90399 NM_001193283 389170 Hs.478048 NM_001004316 ENSG00000197980 LEKR1 - leucine, glutamate and lysine rich 1 protein-coding 375-114 chr13 82881092 82881354 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 1001170 NM_052910 114798 Hs.415478 NM_052910 ENSG00000178235 SLITRK1 LRRC12|TTM SLIT and NTRK like family member 1 protein-coding 458-67 chr14 41734863 41735174 + 2 NA intron (NM_001346173, intron 1 of 4) L1M1|LINE|L1 128162 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 396-108 chr14 79764567 79764920 + 2 NA intron (NR_073547, intron 18 of 20) intron (NR_073547, intron 18 of 20) -446676 NR_038355 100628307 Hs.623865 NR_038355 ENSG00000258766 DIO2-AS1 - DIO2 antisense RNA 1 ncRNA 574-129 chr4 95480299 95480682 + 2 NA intron (NM_003728, intron 1 of 15) intron (NM_003728, intron 1 of 15) 68483 NM_003728 8633 Hs.388565 NM_003728 ENSG00000182168 UNC5C UNC5H3 unc-5 netrin receptor C protein-coding 256-257 chr3 65824516 65824751 + 2 NA intron (NM_001365904, intron 1 of 24) intron (NM_001365904, intron 1 of 24) -69183 NR_046575 100873983 Hs.663889 NR_046575 ENSG00000240175 MAGI1-AS1 - MAGI1 antisense RNA 1 ncRNA 123-15 chr12 96700377 96700454 + 2 NA intron (NM_001306084, intron 46 of 67) intron (NM_001306084, intron 46 of 67) -206842 NM_001135177 121441 Hs.270084 NM_152905 ENSG00000139350 NEDD1 GCP-WD|TUBGCP7 NEDD1 gamma-tubulin ring complex targeting factor protein-coding 416-235 chr3 159503036 159503405 + 2 NA intron (NM_001197108, intron 1 of 6) intron (NM_001197108, intron 1 of 6) 220574 NR_037483 100500803 NR_037483 ENSG00000263634 MIR3919 - microRNA 3919 ncRNA 256-451 chr9 76093524 76093747 + 2 NA intron (NR_120409, intron 7 of 19) intron (NR_120409, intron 7 of 19) 202962 NR_120409 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 313-63 chr10 115310620 115310839 + 2 NA intron (NM_207303, intron 17 of 28) L1PBa|LINE|L1 217364 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 249-271 chr3 126828987 126829166 + 2 NA intron (NM_032343, intron 4 of 7) L1MEf|LINE|L1 124836 NM_032343 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 561-174 chr6 711194 711651 + 2 NA Intergenic Intergenic -18281 NR_073064 55770 Hs.484412 NM_018303 ENSG00000112685 EXOC2 SEC5|SEC5L1|Sec5p exocyst complex component 2 protein-coding 458-97 chr16 83899924 83900220 + 2 NA intron (NM_012213, intron 1 of 4) intron (NM_012213, intron 1 of 4) 957 NM_012213 23417 Hs.644610 NM_012213 ENSG00000103150 MLYCD MCD malonyl-CoA decarboxylase protein-coding 340-475 chr6 47432290 47432575 + 2 NA Intergenic LTR49-int|LTR|ERV1 -45357 NM_012120 23607 Hs.485518 NM_012120 ENSG00000198087 CD2AP CMS CD2 associated protein protein-coding 287-296 chr4 167232408 167232607 + 2 NA intron (NM_001204352, intron 2 of 11) intron (NM_001204352, intron 2 of 11) 1919 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 287-299 chr4 181406064 181406214 + 2 NA Intergenic L1MC5a|LINE|L1 -141110 NR_149139 101928679 Hs.149643 NR_149139 LINC02500 - long intergenic non-protein coding RNA 2500 ncRNA 327-478 chr8 18363975 18364141 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -27224 NM_000015 10 Hs.2 NM_000015 ENSG00000156006 NAT2 AAC2|NAT-2|PNAT N-acetyltransferase 2 protein-coding 280-34 chr1 228199788 228199940 + 2 NA Intergenic L1M4b|LINE|L1 -8180 NM_052843 84033 Hs.650039 NM_052843 ENSG00000154358 OBSCN ARHGEF30|UNC89 obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF protein-coding 307-413 chr6 25186333 25186599 + 2 NA Intergenic L1M5|LINE|L1 -48074 NR_027626 8418 Hs.484918 NR_002174 ENSG00000168405 CMAHP CMAH|CSAH cytidine monophospho-N-acetylneuraminic acid hydroxylase, pseudogene pseudo 381-310 chr5 55071993 55072356 + 2 NA Intergenic L1M5|LINE|L1 -30472 NM_006144 3001 Hs.90708 NM_006144 ENSG00000145649 GZMA CTLA3|HFSP granzyme A protein-coding 289-505 chrX 95688589 95688811 + 2 NA Intergenic Intergenic -625474 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 226-140 chr18 71544469 71544585 + 2 NA intron (NR_038326, intron 2 of 4) intron (NR_038326, intron 2 of 4) 34429 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 602-83 chr22 48132271 48132685 + 2 NA Intergenic Intergenic -141886 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 442-313 chr9 30444875 30445223 + 2 NA Intergenic Intergenic -36595 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 454-176 chr2 148084073 148084346 + 2 NA intron (NM_018328, intron 2 of 14) intron (NM_018328, intron 2 of 14) -62605 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 312-256 chr2 124292432 124292699 + 2 NA intron (NM_130773, intron 3 of 23) BLACKJACK|DNA|hAT-Blackjack 267278 NM_001367498 129684 Hs.660653 NM_130773 ENSG00000155052 CNTNAP5 caspr5 contactin associated protein like 5 protein-coding 465-226 chr5 46051809 46052132 + 2 NA Intergenic ALR/Alpha|Satellite|centr -355590 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 334-400 chr4 136079889 136080097 + 2 NA Intergenic MER4C|LTR|ERV1 -166313 NR_103763 100507528 Hs.518987 NR_103762 ENSG00000248330 LINC00613 - long intergenic non-protein coding RNA 613 ncRNA 323-45 chr10 27426249 27426441 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL -11977 NM_001034842 374308 Hs.631832 NM_001034842 ENSG00000182077 PTCHD3 PTR patched domain containing 3 protein-coding 222-345 chr7 54260454 54260607 + 2 NA Intergenic Charlie1b|DNA|hAT-Charlie -70167 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 700-27 chr14 46931843 46932274 + 2 NA intron (NM_001113498, intron 9 of 16) intron (NM_001113498, intron 9 of 16) -280277 NM_080746 140801 Hs.308332 NM_080746 ENSG00000165496 RPL10L RPL10_5_1358 ribosomal protein L10 like protein-coding 593-85 chr2 229561320 229561717 + 2 NA intron (NM_139072, intron 4 of 12) Tigger19b|DNA|TcMar-Tigger 153037 NM_139072 92737 Hs.234074 NM_139072 ENSG00000187957 DNER UNQ26|bet delta/notch like EGF repeat containing protein-coding 238-192 chr2 202152350 202152543 + 2 NA intron (NM_001277372, intron 13 of 23) intron (NM_001277372, intron 13 of 23) -35388 NR_135243 729224 Hs.623895 NR_135243 KIAA2012-AS1 - KIAA2012 antisense RNA 1 ncRNA 353-539 chr8 133151704 133151884 + 2 NA Intergenic LTR105_Mam|LTR|ERVL -39245 NM_001204870 8840 Hs.492974 NM_003882 ENSG00000104415 CCN4 WISP1|WISP1-OT1|WISP1-UT1|WISP1c|WISP1i|WISP1tc cellular communication network factor 4 protein-coding 281-136 chr15 91527899 91528110 + 2 NA Intergenic L1MC5a|LINE|L1 64665 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 530-256 chr8 112121915 112122300 + 2 NA Intergenic L1MA7|LINE|L1 -521386 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 114-23 chr17 32351387 32351472 + 2 NA intron (NM_001032293, intron 1 of 10) intron (NM_001032293, intron 1 of 10) 1291 NM_003457 7756 Hs.500775 NM_003457 ENSG00000010244 ZNF207 BuGZ|hBuGZ zinc finger protein 207 protein-coding 332-132 chr12 119286627 119286897 + 2 NA intron (NR_024246, intron 2 of 3) MIRb|SINE|MIR 16618 NR_024246 144742 Hs.524782 NR_024246 ENSG00000281196 LINC00934 - long intergenic non-protein coding RNA 934 ncRNA 257-321 chr5 35565106 35565268 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -52676 NM_144722 79925 Hs.298863 NM_024867 ENSG00000152582 SPEF2 CT122|KPL2 sperm flagellar 2 protein-coding 579-105 chr3 144281352 144281854 + 2 NA Intergenic L1M5|LINE|L1 308522 NM_001134470 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 347-60 chr10 107490505 107490696 + 2 NA Intergenic Intergenic -325894 NM_052918 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 238-328 chr6 78753672 78753859 + 2 NA Intergenic L1M1|LINE|L1 -113786 NM_001010844 134728 Hs.656212 NM_001010844 ENSG00000146243 IRAK1BP1 AIP70|SIMPL interleukin 1 receptor associated kinase 1 binding protein 1 protein-coding 405-242 chr5 20571096 20571426 + 2 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 4452 NM_001349558 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 824-13 chr15 90113309 90113919 + 2 NA intron (NR_149130, intron 2 of 2) AluSc|SINE|Alu -11060 NM_002168 3418 Hs.596461 NM_002168 ENSG00000182054 IDH2 D2HGA2|ICD-M|IDH|IDHM|IDP|IDPM|mNADP-IDH isocitrate dehydrogenase (NADP(+)) 2, mitochondrial protein-coding 303-419 chr7 36865410 36865583 + 2 NA intron (NM_001206480, intron 20 of 21) L2c|LINE|L2 53936 NR_031604 100302113 NR_031604 ENSG00000221325 MIR1200 MIRN1200|hsa-mir-1200 microRNA 1200 ncRNA 731-3 chr1 107617748 107618252 + 2 NA intron (NM_006113, intron 20 of 26) MER1B|DNA|hAT-Charlie 70499 NM_001079874 10451 Hs.267659 NM_006113 ENSG00000134215 VAV3 - vav guanine nucleotide exchange factor 3 protein-coding 319-487 chr7 3393826 3394125 + 2 NA intron (NM_152744, intron 1 of 44) L1M1|LINE|L1 92723 NM_152744 221935 Hs.653013 NM_152744 ENSG00000146555 SDK1 - sidekick cell adhesion molecule 1 protein-coding 303-453 chr8 84183966 84184176 + 2 NA promoter-TSS (NM_001100391) promoter-TSS (NM_001100391) -595 NM_001354323 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 205-144 chr2 116851729 116851885 + 2 NA Intergenic HAL1|LINE|L1 -962884 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 287-101 chr11 121795259 121795520 + 2 NA Intergenic Intergenic 304455 NR_029671 406911 NR_029671 ENSG00000207971 MIR125B1 MIRN125B1|mir-125b-1 microRNA 125b-1 ncRNA 358-523 chr9 119539170 119539514 + 2 NA Intergenic Intergenic -169907 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 324-456 chr6 44641393 44641591 + 2 NA Intergenic Intergenic -89611 NR_134609 105375075 Hs.123393 NR_134609 LOC105375075 - uncharacterized LOC105375075 ncRNA 284-166 chr17 77522958 77523206 + 2 NA Intergenic MER4A1_|LTR|ERV1 -3919 NR_148967 400622 Hs.514516 NR_148967 LOC400622 - uncharacterized LOC400622 ncRNA 147-54 chr21 29250225 29250337 + 2 NA intron (NR_027072, intron 1 of 1) intron (NR_027072, intron 1 of 1) -48641 NM_001186 571 Hs.154276 NM_001186 ENSG00000156273 BACH1 BACH-1|BTBD24 BTB domain and CNC homolog 1 protein-coding 368-12 chr1 78060674 78060929 + 2 NA intron (NM_017655, intron 1 of 5) intron (NM_017655, intron 1 of 5) 14835 NM_017655 54810 Hs.603818 NM_017655 ENSG00000137960 GIPC2 SEMCAP-2|SEMCAP2 GIPC PDZ domain containing family member 2 protein-coding 338-338 chr3 71970881 71971062 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR 129484 NR_104116 285286 Hs.559386 NR_104116 ENSG00000241163 LINC00877 - long intergenic non-protein coding RNA 877 ncRNA 318-334 chr21 32093219 32093405 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -7017 NR_038033 100551499 Hs.224449 NR_038033 LINC00159 C21orf44|NCRNA00159 long intergenic non-protein coding RNA 159 ncRNA 241-127 chr15 74530704 74530902 + 2 NA Intergenic Intergenic -10374 NM_001307939 10620 Hs.647642 NM_006465 ENSG00000179361 ARID3B BDP|DRIL2 AT-rich interaction domain 3B protein-coding 536-21 chr1 213346332 213346699 + 2 NA Intergenic HAL1ME|LINE|L1 295274 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 347-514 chr8 86399203 86399443 + 2 NA intron (NM_007013, intron 7 of 24) intron (NM_007013, intron 7 of 24) 56776 NM_007013 11059 Hs.655189 NM_007013 ENSG00000123124 WWP1 AIP5|Tiul1|hSDRP1 WW domain containing E3 ubiquitin protein ligase 1 protein-coding 470-237 chr6 63295120 63295546 + 2 NA intron (NM_001143940, intron 1 of 4) intron (NM_001143940, intron 1 of 4) 24644 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 288-116 chr14 54928152 54928371 + 2 NA Intergenic MER5B|DNA|hAT-Charlie -25435 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 251-158 chr2 16064868 16065031 + 2 NA intron (NR_126559, intron 1 of 3) Tigger17a|DNA|TcMar-Tigger 14522 NR_126559 104797537 Hs.435748 NR_126559 ENSG00000236289 GACAT3 LINC01458|lncRNA-AC130710 gastric cancer associated transcript 3 ncRNA 354-82 chr11 73125854 73126202 + 2 NA intron (NM_014824, intron 2 of 19) intron (NM_014824, intron 2 of 19) 16290 NM_014824 9873 Hs.744959 NM_014824 ENSG00000137478 FCHSD2 NWK|NWK1|SH3MD3 FCH and double SH3 domains 2 protein-coding 294-411 chr6 98723888 98724144 + 2 NA Intergenic Intergenic 107684 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 438-251 chr7 17330437 17330859 + 2 NA intron (NM_001621, intron 5 of 10) intron (NM_001621, intron 5 of 10) 31996 NM_001621 196 Hs.171189 NM_001621 ENSG00000106546 AHR RP85|bHLHe76 aryl hydrocarbon receptor protein-coding 254-334 chr5 165846908 165847079 + 2 NA Intergenic Intergenic 1079377 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 406-280 chr7 86109815 86110143 + 2 NA Intergenic Intergenic -533930 NM_001363522 2913 Hs.590575 NM_000840 ENSG00000198822 GRM3 GLUR3|GPRC1C|MGLUR3|mGlu3 glutamate metabotropic receptor 3 protein-coding 305-239 chr2 22651892 22652154 + 2 NA Intergenic Intergenic 115544 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 326-284 chr2 240524312 240524531 + 2 NA intron (NM_017844, intron 5 of 13) intron (NM_017844, intron 5 of 13) 33567 NM_017844 51281 Hs.656615 NM_016552 ENSG00000144504 ANKMY1 ZMYND13 ankyrin repeat and MYND domain containing 1 protein-coding 277-7 chr1 57380474 57380731 + 2 NA intron (NM_001353980, intron 4 of 5) intron (NM_001353980, intron 4 of 5) 42510 NM_001365793 1600 Hs.477370 NM_021080 ENSG00000173406 DAB1 SCA37 DAB adaptor protein 1 protein-coding 306-112 chr12 92269648 92269833 + 2 NA Intergenic Intergenic 123655 NR_135037 101928617 Hs.434392 NR_135036 LOC101928617 - uncharacterized LOC101928617 ncRNA 544-143 chr3 19597192 19597626 + 2 NA Intergenic L1PA16|LINE|L1 -282478 NR_039954 100616291 NR_039954 ENSG00000271898 MIR4791 mir-4791 microRNA 4791 ncRNA 309-433 chr5 33501776 33501930 + 2 NA Intergenic Intergenic 61077 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 225-326 chr7 42562668 42562889 + 2 NA Intergenic L1PB1|LINE|L1 143669 NR_110833 101928795 Hs.566753 NR_110833 ENSG00000238284 LINC01448 - long intergenic non-protein coding RNA 1448 ncRNA 531-172 chr4 38748603 38749049 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 34164 NM_001195106 81793 Hs.120551 NM_030956 ENSG00000174123 TLR10 CD290 toll like receptor 10 protein-coding 430-43 chr10 107752133 107752411 + 2 NA Intergenic L1MA2|LINE|L1 317021 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 227-341 chr7 41163491 41163620 + 2 NA Intergenic Intergenic 61951 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 339-557 chr8 27711999 27712219 + 2 NA Intergenic L1MC1|LINE|L1 -10342 NR_037418 100500871 NR_037418 ENSG00000265075 MIR3622B - microRNA 3622b ncRNA 299-474 chr8 144622637 144622900 + 2 NA intron (NM_001308208, intron 1 of 10) intron (NM_001308208, intron 1 of 10) -9265 NM_001308207 80728 Hs.148988 NM_025251 ENSG00000147799 ARHGAP39 CrGAP|Vilse Rho GTPase activating protein 39 protein-coding 370-472 chr9 35442391 35442687 + 2 NA intron (NR_003581, intron 6 of 17) L1MEd|LINE|L1 35784 NR_110320 158381 Hs.575661 NR_003581 ENSG00000179766 ATP8B5P FetA ATPase phospholipid transporting 8B5, pseudogene pseudo 608-160 chr8 122484061 122484634 + 2 NA intron (NR_131202, intron 2 of 3) intron (NR_131202, intron 2 of 3) 84297 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 537-105 chr2 32083374 32083653 + 2 NA intron (NM_001363875, intron 1 of 15) L1MD3|LINE|L1 19902 NM_199436 6683 Hs.468091 NM_014946 ENSG00000021574 SPAST ADPSP|FSP2|SPG4 spastin protein-coding 461-173 chr3 94595703 94596105 + 2 NA Intergenic Intergenic -342359 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 601-20 chr11 38861838 38862228 + 2 NA Intergenic L1PB1|LINE|L1 213175 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 227-184 chr2 137800997 137801166 + 2 NA Intergenic Intergenic 126851 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 125-50 chr5 2775228 2775346 + 2 NA Intergenic L1MEd|LINE|L1 23156 NM_001294337 153571 Hs.148486 NM_178569 ENSG00000186493 C5orf38 CEI|IRX2NB chromosome 5 open reading frame 38 protein-coding 321-366 chr3 25490787 25491079 + 2 NA intron (NR_110892, intron 2 of 6) intron (NR_110892, intron 2 of 6) 32623 NM_001290217 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 325-37 chr1 213441752 213442008 + 2 NA Intergenic L1MA7|LINE|L1 390639 NM_012424 26750 Hs.591416 NM_012424 ENSG00000136643 RPS6KC1 RPK118|RSKL1|S6K-delta-1|S6PKh1|humS6PKh1 ribosomal protein S6 kinase C1 protein-coding 392-295 chr6 170162969 170163309 + 2 NA TTS (NR_125878) TTS (NR_125878) 2497 NR_125878 102724511 Hs.550045 NR_125878 LOC102724511 - uncharacterized LOC102724511 ncRNA 251-346 chr6 120510042 120510182 + 2 NA Intergenic Intergenic 494933 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 480-315 chr9 75758702 75759095 + 2 NA Intergenic Intergenic -131746 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 512-86 chr15 34033608 34033958 + 2 NA intron (NM_020371, intron 1 of 5) Charlie2a|DNA|hAT-Charlie 5421 NM_020371 57099 Hs.555966 NM_020371 ENSG00000169857 AVEN PDCD12 apoptosis and caspase activation inhibitor protein-coding 444-21 chr10 53419329 53419583 + 2 NA Intergenic L1PB1|LINE|L1 -647756 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 220-30 chr1 217040596 217040800 + 2 NA intron (NM_001243509, intron 1 of 8) MIR|SINE|MIR 36294 NM_001243507 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 253-98 chr12 27714848 27715050 + 2 NA intron (NM_021821, intron 2 of 7) intron (NM_021821, intron 2 of 7) 4117 NM_021821 60488 Hs.714076 NM_021821 ENSG00000061794 MRPS35 HDCMD11P|MDS023|MRP-S28|MRPS28 mitochondrial ribosomal protein S35 protein-coding 342-70 chr10 66192966 66193285 + 2 NA intron (NM_001127384, intron 13 of 17) intron (NM_001127384, intron 13 of 17) 621700 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 452-247 chr7 46497762 46498052 + 2 NA Intergenic L1MEd|LINE|L1 199215 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 336-37 chr1 178248361 178248565 + 2 NA intron (NM_170692, intron 1 of 17) L1PA8|LINE|L1 -92988 NM_004841 9462 Hs.496139 NM_004841 ENSG00000075391 RASAL2 NGAP RAS protein activator like 2 protein-coding 326-32 chr1 167910123 167910447 + 2 NA intron (NM_018417, intron 1 of 32) intron (NM_018417, intron 1 of 32) 3849 NM_001167749 55811 Hs.320892 NM_018417 ENSG00000143199 ADCY10 HCA2|HEL-S-7a|SAC|SACI|Sacy|hsAC adenylate cyclase 10 protein-coding 220-216 chr3 18176553 18176769 + 2 NA intron (NR_161333, intron 4 of 4) Tigger4b|DNA|TcMar-Tigger 214109 NR_161333 339862 Hs.652981 NR_046199 LOC339862 - uncharacterized LOC339862 ncRNA 444-81 chr16 14385007 14385378 + 2 NA Intergenic L1MC5a|LINE|L1 -14926 NR_131191 105447648 Hs.554151 NR_131191 ENSG00000260009 LINC02130 - long intergenic non-protein coding RNA 2130 ncRNA 766-47 chr21 29424061 29424590 + 2 NA Intergenic L1MC2|LINE|L1 51824 NR_046564 100874322 Hs.326404 NR_046564 BACH1-IT2 - BACH1 intronic transcript 2 ncRNA 473-126 chr2 18631752 18632052 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -42322 NM_001199104 100526794 Hs.744358 NM_001199103 ENSG00000250741 NT5C1B-RDH14 AIRP|NT5C1B|cN-IB|cN1B NT5C1B-RDH14 readthrough protein-coding 263-143 chr16 73810255 73810478 + 2 NA Intergenic Intergenic 405155 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 587-12 chr10 9607601 9608064 + 2 NA Intergenic Intergenic -312239 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 601-138 chr7 51807173 51807674 + 2 NA Intergenic L1MD|LINE|L1 -414167 NR_157843 107986794 NR_157843 LOC107986794 - uncharacterized LOC107986794 ncRNA 351-352 chr4 81234634 81234873 + 2 NA Intergenic Intergenic -19531 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 153-75 chr4 151366132 151366245 + 2 NA Intergenic L1MEc|LINE|L1 -42988 NM_001348694 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 636-66 chr19 39932852 39933391 + 2 NA intron (NM_003890, intron 1 of 28) AluSx3|SINE|Alu 1505 NM_003890 8857 Hs.111732 NM_003890 FCGBP FC(GAMMA)BP Fc fragment of IgG binding protein protein-coding 528-222 chr6 62138398 62138789 + 2 NA intron (NR_146874, intron 2 of 13) intron (NR_146874, intron 2 of 13) 147632 NR_146874 202559 Hs.519794 NM_152688 ENSG00000112232 KHDRBS2 SLM-1|SLM1 KH RNA binding domain containing, signal transduction associated 2 protein-coding 445-283 chr9 6249309 6249557 + 2 NA intron (NM_001353802, intron 1 of 6) intron (NM_001353802, intron 1 of 6) 962 NM_001353802 90865 Hs.731660 NM_033439 ENSG00000137033 IL33 C9orf26|DVS27|IL1F11|NF-HEV|NFEHEV interleukin 33 protein-coding 304-204 chr17 82518617 82518802 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -1023 NM_004514 3607 Hs.591140 NM_004514 ENSG00000141568 FOXK2 ILF|ILF-1|ILF1|nGTBP forkhead box K2 protein-coding 298-149 chr15 95595012 95595280 + 2 NA Intergenic Intergenic 162053 NR_027132 145820 Hs.652702 NR_027132 ENSG00000259134 LINC00924 - long intergenic non-protein coding RNA 924 ncRNA 280-380 chr7 50358837 50359068 + 2 NA intron (NM_001291840, intron 2 of 2) intron (NM_001291840, intron 2 of 2) 39904 NM_001220771 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 219-4 chr1 34576946 34577097 + 2 NA Intergenic L1MA8|LINE|L1 92673 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 242-127 chr16 58884870 58885108 + 2 NA Intergenic L1M6|LINE|L1 -150673 NM_002080 2806 Hs.599470 NM_002080 ENSG00000125166 GOT2 KAT4|KATIV|KYAT4|mitAAT glutamic-oxaloacetic transaminase 2 protein-coding 243-257 chr20 48253764 48253929 + 2 NA Intergenic L1MD2|LINE|L1 -106065 NR_026958 284749 Hs.299080 NR_026958 ENSG00000235621 LINC00494 - long intergenic non-protein coding RNA 494 ncRNA 567-23 chr10 31557129 31557455 + 2 NA Intergenic L1MA7|LINE|L1 -157537 NM_001368169 100505502 Hs.730227 NM_001368169 LOC100505502 - putative UPF0607 protein FLJ37424 protein-coding 410-4 chr1 73235846 73236251 + 2 NA Intergenic Intergenic -70122 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 288-261 chr3 64007876 64008099 + 2 NA intron (NR_038286, intron 1 of 2) intron (NR_038286, intron 1 of 2) 3965 NR_038286 100507062 Hs.152536 NR_038286 ENSG00000239653 PSMD6-AS2 - PSMD6 antisense RNA 2 ncRNA 467-82 chr14 61540407 61540780 + 2 NA intron (NM_006255, intron 12 of 13) MIR|SINE|MIR 29601 NR_110417 101927780 Hs.254789 NR_110416 ENSG00000250548 LINC01303 - long intergenic non-protein coding RNA 1303 ncRNA 206-246 chr7 25871726 25871911 + 2 NA Intergenic Intergenic 78168 NR_029597 406940 NR_029597 ENSG00000199085 MIR148A MIRN148|MIRN148A|hsa-mir-148|mir-148a microRNA 148a ncRNA 260-111 chr12 129192486 129192650 + 2 NA intron (NM_133448, intron 5 of 8) intron (NM_133448, intron 5 of 8) -16033 NR_110058 101927735 Hs.569212 NR_110058 ENSG00000256699 TMEM132D-AS2 - TMEM132D antisense RNA 2 ncRNA 265-64 chr11 91123797 91123972 + 2 NA Intergenic L1MA7|LINE|L1 -254682 NR_031663 100302228 NR_031663 ENSG00000221586 MIR1261 MIRN1261|hsa-mir-1261 microRNA 1261 ncRNA 219-28 chr10 26495872 26496055 + 2 NA intron (NM_019043, intron 3 of 14) (TA)n|Simple_repeat|Simple_repeat 57622 NM_019043 54518 Hs.310421 NM_019043 ENSG00000077420 APBB1IP INAG1|PREL1|RARP1|RIAM amyloid beta precursor protein binding family B member 1 interacting protein protein-coding 269-274 chr4 59407660 59407860 + 2 NA Intergenic Intergenic 394187 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 218-250 chr4 103645381 103645551 + 2 NA intron (NM_001059, intron 3 of 4) intron (NM_001059, intron 3 of 4) 74519 NM_001059 6870 Hs.942 NM_001059 ENSG00000169836 TACR3 HH11|NK-3R|NK3|NK3R|NKR|TAC3R|TAC3RL tachykinin receptor 3 protein-coding 276-368 chr5 42293569 42293724 + 2 NA Intergenic Intergenic -118301 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 169 chr1 62505586 62505725 + 2 NA intron (NM_001367561, intron 36 of 49) intron (NM_001367561, intron 36 of 49) 68606 NM_003368 7398 Hs.35086 NM_003368 ENSG00000162607 USP1 UBP ubiquitin specific peptidase 1 protein-coding 541-230 chr8 43400877 43401324 + 2 NA Intergenic THE1D-int|LTR|ERVL-MaLR 108658 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 362-149 chr14 61143770 61144032 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 137437 NM_001017970 161291 Hs.146180 NM_001017970 ENSG00000182107 TMEM30B CDC50B transmembrane protein 30B protein-coding 191-193 chr7 8122806 8122949 + 2 NA intron (NR_146928, intron 13 of 14) intron (NR_146928, intron 13 of 14) 139175 NM_022307 3382 Hs.487561 NM_004968 ENSG00000003147 ICA1 ICA69|ICAp69 islet cell autoantigen 1 protein-coding 366-44 chr10 32394398 32394677 + 2 NA Intergenic MER113|DNA|hAT-Charlie -15768 NM_001282391 80314 Hs.167805 NM_025209 ENSG00000120616 EPC1 Epl1 enhancer of polycomb homolog 1 protein-coding 218-254 chr4 185918106 185918274 + 2 NA intron (NM_001270771, intron 1 of 23) intron (NM_001270771, intron 1 of 23) 38182 NM_001270771 8470 Hs.481342 NM_003603 ENSG00000154556 SORBS2 ARGBP2|PRO0618 sorbin and SH3 domain containing 2 protein-coding 359-32 chr1 181520157 181520465 + 2 NA intron (NM_001205293, intron 3 of 47) MIRb|SINE|MIR 36794 NM_001205293 777 Hs.437444 NM_000721 ENSG00000198216 CACNA1E BII|CACH6|CACNL1A6|Cav2.3|EIEE69|gm139 calcium voltage-gated channel subunit alpha1 E protein-coding 781-27 chr19 32144181 32144827 + 2 NA Intergenic Intergenic -38588 NR_110694 101927411 Hs.515337 NR_110694 ENSG00000267204 LINC01782 - long intergenic non-protein coding RNA 1782 ncRNA 268-108 chr14 25786055 25786276 + 2 NA Intergenic L1ME1|LINE|L1 -735868 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 319-125 chr13 54251423 54251722 + 2 NA Intergenic Intergenic 60476 NR_031628 100302187 NR_031628 ENSG00000283126 MIR1297 MIRN1297|hsa-mir-1297|mir-1297 microRNA 1297 ncRNA 137-10 chr11 57859996 57860104 + 2 NA Intergenic L1ME3D|LINE|L1 98248 NM_001206884 1500 Hs.166011 NM_001331 ENSG00000198561 CTNND1 BCDS2|CAS|CTNND|P120CAS|P120CTN|p120|p120(CAS)|p120(CTN) catenin delta 1 protein-coding 171-15 chr10 65160285 65160406 + 2 NA Intergenic L1MB2|LINE|L1 -235827 NR_134456 101928887 Hs.463900 NR_134456 ENSG00000224714 LINC02671 - long intergenic non-protein coding RNA 2671 ncRNA 426-268 chr7 36770274 36770491 + 2 NA Intergenic L2a|LINE|L2 -45833 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 528-206 chr5 125523103 125523582 + 2 NA intron (NR_109887, intron 3 of 3) intron (NR_109887, intron 3 of 3) 30081 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 683-58 chr4 33022051 33022452 + 2 NA Intergenic L1ME3|LINE|L1 671213 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 465-96 chr16 50484682 50485030 + 2 NA Intergenic Intergenic -63540 NM_033119 85407 Hs.187578 NM_033119 ENSG00000140807 NKD1 Naked1 NKD inhibitor of WNT signaling pathway 1 protein-coding 398-197 chr22 46834200 46834496 + 2 NA intron (NM_001284305, intron 4 of 12) L1MA9|LINE|L1 60421 NM_001284305 25771 Hs.435044 NM_014346 ENSG00000054611 TBC1D22A C22orf4|HSC79E021 TBC1 domain family member 22A protein-coding 222-175 chr2 67026263 67026421 + 2 NA Intergenic Intergenic -60104 NR_110564 102800447 Hs.144196 NR_110564 LINC01828 - long intergenic non-protein coding RNA 1828 ncRNA 300-302 chr3 180344575 180344738 + 2 NA Intergenic L1MA5A|LINE|L1 -69517 NR_132416 100505609 Hs.518427 NR_132416 ENSG00000241696 LINC02053 - long intergenic non-protein coding RNA 2053 ncRNA 372-185 chr17 44975172 44975482 + 2 NA Intergenic Intergenic -7024 NM_006688 10882 Hs.134012 NM_006688 ENSG00000131094 C1QL1 C1QRF|C1QTNF14|CRF|CTRP14 complement C1q like 1 protein-coding 250-357 chr5 118914621 118914760 + 2 NA intron (NM_001308081, intron 4 of 5) 7SLRNA|srpRNA|srpRNA -59896 NR_128710 103504734 NR_128710 ENSG00000283475 MIR1244-4 hsa-mir-1244-4 microRNA 1244-4 ncRNA 240-139 chr14 68024733 68024907 + 2 NA intron (NM_133509, intron 7 of 10) L1PA16|LINE|L1 201228 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 379-207 chr22 28380942 28381227 + 2 NA intron (NM_001145418, intron 2 of 22) intron (NM_001145418, intron 2 of 22) -78785 NR_106713 102466081 NR_106713 ENSG00000276162 MIR5739 hsa-mir-5739 microRNA 5739 ncRNA 285-378 chr7 10155659 10155928 + 2 NA Intergenic L1PB4|LINE|L1 521523 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 276-254 chr20 112439 112657 + 2 NA Intergenic L1PA16|LINE|L1 24876 NM_153325 245938 Hs.380220 NM_153325 ENSG00000178591 DEFB125 DEFB-25 defensin beta 125 protein-coding 291-435 chr8 50802271 50802451 + 2 NA Intergenic MER41D|LTR|ERV1 638230 NM_001321778 54212 Hs.584914 NM_018967 ENSG00000147481 SNTG1 G1SYN|SYN4 syntrophin gamma 1 protein-coding 407-150 chr2 142530225 142530613 + 2 NA Intergenic Intergenic -347245 NM_001032998 8942 Hs.470126 NM_003937 ENSG00000115919 KYNU KYNUU|VCRL2 kynureninase protein-coding 282-264 chr20 38492699 38492920 + 2 NA intron (NM_001282917, intron 2 of 29) intron (NM_001282917, intron 2 of 29) 19966 NM_001282917 57148 Hs.598850 NM_020336 ENSG00000170471 RALGAPB KIAA1219|RalGAPbeta Ral GTPase activating protein non-catalytic beta subunit protein-coding 334-182 chr15 97494343 97494602 + 2 NA intron (NR_120324, intron 2 of 4) intron (NR_120324, intron 2 of 4) 27339 NR_120324 101927286 Hs.611279 NR_120324 ENSG00000259664 LINC02254 - long intergenic non-protein coding RNA 2254 ncRNA 242-384 chr8 4907090 4907280 + 2 NA intron (NM_033225, intron 1 of 69) intron (NM_033225, intron 1 of 69) 87729 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 358-227 chr2 104270268 104270497 + 2 NA Intergenic Intergenic 137950 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 475-156 chr2 217137518 217137914 + 2 NA Intergenic L1PA16|LINE|L1 -145017 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 275-166 chr18 63400062 63400254 + 2 NA exon (NM_004869, exon 7 of 11) exon (NM_004869, exon 7 of 11) 22318 NM_004869 9525 Hs.126550 NM_004869 ENSG00000119541 VPS4B MIG1|SKD1|SKD1B|VPS4-2 vacuolar protein sorting 4 homolog B protein-coding 208-237 chr6 96207620 96207767 + 2 NA 3' UTR (NM_006581, exon 3 of 3) 3' UTR (NM_006581, exon 3 of 3) 191719 NM_006581 10690 Hs.49117 NM_006581 ENSG00000172461 FUT9 Fuc-TIX fucosyltransferase 9 protein-coding 254-167 chr18 64330486 64330689 + 2 NA intron (NR_033881, intron 5 of 9) intron (NR_033881, intron 5 of 9) -70532 NR_033983 400654 Hs.434235 NR_033983 ENSG00000266952 LINC01538 - long intergenic non-protein coding RNA 1538 ncRNA 251-73 chr12 113029139 113029378 + 2 NA Intergenic MamGypLTR1c|LTR|Gypsy -28599 NM_004416 1840 Hs.372152 NM_004416 ENSG00000135144 DTX1 RNF140|hDx-1 deltex E3 ubiquitin ligase 1 protein-coding 397-55 chr11 85494192 85494482 + 2 NA intron (NM_001142699, intron 3 of 27) intron (NM_001142699, intron 3 of 27) 132933 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 418-179 chr4 41185623 41185970 + 2 NA intron (NM_173075, intron 1 of 16) intron (NM_173075, intron 1 of 16) 28746 NM_173075 323 Hs.479602 NM_004307 ENSG00000163697 APBB2 FE65L|FE65L1 amyloid beta precursor protein binding family B member 2 protein-coding 205-37 chr10 70624127 70624279 + 2 NA Intergenic LTR26E|LTR|ERV1 -21415 NM_005041 5551 Hs.2200 NM_005041 ENSG00000180644 PRF1 HPLH2|P1|PFP perforin 1 protein-coding 197-55 chr14 44646016 44646138 + 2 NA Intergenic Intergenic 138668 NR_135257 105370473 Hs.180134 NR_135257 ENSG00000258747 LOC105370473 - uncharacterized LOC105370473 ncRNA 315-119 chr13 91094256 91094474 + 2 NA Intergenic L2b|LINE|L2 -4748 NR_104057 101930747 Hs.112745 NR_104057 LINC00380 - long intergenic non-protein coding RNA 380 ncRNA 479-274 chr9 68883857 68884213 + 2 NA intron (NM_003558, intron 6 of 15) L1MA7|LINE|L1 91806 NR_110647 101927069 Hs.663405 NR_110647 LOC101927069 - uncharacterized LOC101927069 ncRNA 404-50 chr10 83355987 83356311 + 2 NA Intergenic L1MB4|LINE|L1 320940 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 197-109 chr2 160634391 160634546 + 2 NA Intergenic Intergenic -140661 NM_016836 5937 Hs.470412 NM_002897 ENSG00000153250 RBMS1 C2orf12|HCC-4|MSSP|MSSP-1|MSSP-2|MSSP-3|SCR2|YC1 RNA binding motif single stranded interacting protein 1 protein-coding 323-101 chr11 117566114 117566355 + 2 NA intron (NM_020693, intron 3 of 32) intron (NM_020693, intron 3 of 32) 230982 NM_020693 57453 Hs.659513 NM_020693 ENSG00000177103 DSCAML1 DSCAM2 DS cell adhesion molecule like 1 protein-coding 329-363 chr3 60689580 60689887 + 2 NA intron (NM_001320900, intron 5 of 9) intron (NM_001320900, intron 5 of 9) -71863 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 608-159 chr8 121087097 121087691 + 2 NA Intergenic MIRb|SINE|MIR -275348 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 333-361 chr3 110485693 110485980 + 2 NA Intergenic Intergenic 584123 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 444-59 chr13 37855185 37855534 + 2 NA intron (NM_003306, intron 1 of 10) L1MA2|LINE|L1 15066 NM_001135956 7223 Hs.262960 NM_003306 ENSG00000133107 TRPC4 HTRP-4|HTRP4|TRP4 transient receptor potential cation channel subfamily C member 4 protein-coding 442-74 chr14 52006172 52006574 + 2 NA 3' UTR (NM_016039, exon 8 of 8) 3' UTR (NM_016039, exon 8 of 8) 16827 NM_016039 51637 Hs.534457 NM_016039 ENSG00000087302 RTRAF C14orf166|CGI-99|CGI99|CLE|CLE7|LCRP369|RLLM1|hCLE|hCLE1 RNA transcription, translation and transport factor protein-coding 374-259 chr3 125345683 125345902 + 2 NA intron (NM_001348427, intron 1 of 9) L1MB8|LINE|L1 11488 NM_001348433 7707 Hs.592591 NM_021964 ENSG00000163848 ZNF148 BERF-1|BFCOL1|GDACCF|HT-BETA|ZBP-89|ZFP148|pHZ-52 zinc finger protein 148 protein-coding 342-408 chr5 85498148 85498396 + 2 NA Intergenic L1MD2|LINE|L1 -784172 NR_003719 285622 Hs.449272 NR_003719 NBPF22P - NBPF member 22, pseudogene pseudo 329-283 chr2 114007366 114007581 + 2 NA TTS (NR_148507) TTS (NR_148507) -27489 NR_034130 100499194 Hs.662336 NR_034130 LOC100499194 - uncharacterized LOC100499194 ncRNA 314-277 chr2 56126664 56126867 + 2 NA Intergenic Intergenic -36383 NR_135590 101927165 Hs.679803 NR_135590 LINC01813 - long intergenic non-protein coding RNA 1813 ncRNA 364-252 chr21 18942934 18943286 + 2 NA Intergenic Intergenic -183298 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 350-57 chr10 104152935 104153222 + 2 NA intron (NM_025145, intron 27 of 37) intron (NM_025145, intron 27 of 37) 30907 NM_001002759 119392 Hs.93667 NM_145247 ENSG00000156384 SFR1 C10orf78|MEI5|MEIR5|bA373N18.1 SWI5 dependent homologous recombination repair protein 1 protein-coding 265-196 chr2 155398115 155398298 + 2 NA Intergenic (TGTG)n|Simple_repeat|Simple_repeat 699511 NM_001260510 3760 Hs.591606 NM_002239 ENSG00000162989 KCNJ3 GIRK1|KGA|KIR3.1 potassium voltage-gated channel subfamily J member 3 protein-coding 425-30 chr10 20608631 20608942 + 2 NA Intergenic Intergenic 56816 NR_039822 100616383 NR_039822 ENSG00000265372 MIR4675 - microRNA 4675 ncRNA 198-2 chr1 20017914 20018053 + 2 NA Intergenic L1M1|LINE|L1 -37549 NM_001161727 5320 Hs.466804 NM_000300 ENSG00000188257 PLA2G2A MOM1|PLA2|PLA2B|PLA2L|PLA2S|PLAS1|sPLA2 phospholipase A2 group IIA protein-coding 546-220 chr7 50228321 50228720 + 2 NA Intergenic Intergenic -75544 NM_001291839 10320 Hs.435949 NM_006060 ENSG00000185811 IKZF1 CVID13|Hs.54452|IK1|IKAROS|LYF1|LyF-1|PPP1R92|PRO0758|ZNFN1A1 IKAROS family zinc finger 1 protein-coding 313-198 chr17 31644080 31644266 + 2 NA Intergenic Intergenic 68762 NR_029856 100126356 NR_029856 ENSG00000283978 MIR365B MIR365-2|MIRN365-2|hsa-mir-365b|mir-365b microRNA 365b ncRNA 703-68 chr4 84498155 84498638 + 2 NA promoter-TSS (NM_006168) promoter-TSS (NM_006168) -162 NM_006168 4825 Hs.546270 NM_006168 ENSG00000163623 NKX6-1 NKX6.1|NKX6A NK6 homeobox 1 protein-coding 602-29 chr13 96316894 96317319 + 2 NA intron (NM_153456, intron 1 of 1) L1PA16|LINE|L1 -110123 NR_039723 100616137 NR_039723 ENSG00000283487 MIR4501 - microRNA 4501 ncRNA 263-407 chr8 12800475 12800652 + 2 NA intron (NR_102423, intron 1 of 1) intron (NR_102423, intron 1 of 1) 6323 NR_102423 101409254 Hs.571476 NR_102423 ENSG00000255494 LINC00681 - long intergenic non-protein coding RNA 681 ncRNA 468-14 chr1 178689337 178689649 + 2 NA Intergenic Intergenic 11744 NR_039622 100616328 NR_039622 ENSG00000266417 MIR4424 - microRNA 4424 ncRNA 334-534 chr8 80962833 80963028 + 2 NA Intergenic Intergenic -88149 NM_001033723 619279 Hs.434957 NM_032651 ENSG00000164684 ZNF704 Gig1 zinc finger protein 704 protein-coding 328-357 chr3 95603665 95603880 + 2 NA Intergenic Intergenic 79421 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 384-158 chr2 15722611 15722944 + 2 NA Intergenic MIRb|SINE|MIR 31995 NR_110201 101926966 Hs.502835 NR_110201 ENSG00000231031 LINC01804 - long intergenic non-protein coding RNA 1804 ncRNA 304-422 chr5 67685101 67685269 + 2 NA Intergenic L1MA3|LINE|L1 -38396 NR_147169 105379006 NR_147169 ENSG00000249736 LINC02242 - long intergenic non-protein coding RNA 2242 ncRNA 274-291 chr4 118879323 118879563 + 2 NA intron (NM_001286754, intron 1 of 4) MLT1A0|LTR|ERVL-MaLR -9398 NM_001286755 171024 Hs.655519 NM_133477 ENSG00000172403 SYNPO2 - synaptopodin 2 protein-coding 373-447 chrX 139227667 139227970 + 2 NA Intergenic L2c|LINE|L2 -22795 NM_001139501 2258 Hs.6540 NM_004114 ENSG00000129682 FGF13 FGF-13|FGF2|FHF-2|FHF2|LINC00889 fibroblast growth factor 13 protein-coding 356-89 chr11 98239522 98239751 + 2 NA Intergenic Intergenic -781313 NM_001243270 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 137-38 chr17 78008485 78008613 + 2 NA intron (NM_018996, intron 2 of 20) intron (NM_018996, intron 2 of 20) 4312 NM_001142640 57690 Hs.406810 NM_018996 ENSG00000078687 TNRC6C - trinucleotide repeat containing adaptor 6C protein-coding 391-203 chr20 33048843 33049096 + 2 NA Intergenic Intergenic -6362 NM_182658 359710 Hs.472442 NM_182658 ENSG00000186190 BPIFB3 C20orf185|LPLUNC3|RYA3 BPI fold containing family B member 3 protein-coding 423-244 chr6 104237673 104237888 + 2 NA Intergenic Intergenic 621766 NM_001321084 57531 Hs.434340 NM_020771 ENSG00000085382 HACE1 SPPRS HECT domain and ankyrin repeat containing E3 ubiquitin protein ligase 1 protein-coding 370-200 chr19 28058245 28058447 + 2 NA Intergenic Intergenic -264406 NR_027301 148189 Hs.706547 NR_027301 ENSG00000261824 LINC00662 - long intergenic non-protein coding RNA 662 ncRNA 359-225 chr2 33874146 33874480 + 2 NA intron (NR_126403, intron 2 of 5) L1MD|LINE|L1 -146096 NR_003143 151325 Hs.528847 NM_207329 ENSG00000239649 MYADML - myeloid associated differentiation marker like (pseudogene) pseudo 526-61 chr12 71456823 71457267 + 2 NA intron (NR_110596, intron 1 of 19) intron (NR_110596, intron 1 of 19) 17247 NM_003667 8549 Hs.658889 NM_003667 ENSG00000139292 LGR5 FEX|GPR49|GPR67|GRP49|HG38 leucine rich repeat containing G protein-coupled receptor 5 protein-coding 619-134 chr8 140010015 140010417 + 2 NA intron (NM_001160372, intron 18 of 22) intron (NM_001160372, intron 18 of 22) 90319 NR_144431 359809 Hs.26814 NR_144431 ENSG00000282164 PEG13 - paternally expressed 13 ncRNA 347-308 chr3 79810012 79810286 + 2 NA Intergenic Intergenic -42151 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 510-269 chr7 159317665 159318014 + 2 NA Intergenic L1M4|LINE|L1 -172882 NR_130758 7434 Hs.585052 NM_003382 ENSG00000106018 VIPR2 C16DUPq36.3|DUP7q36.3|PACAP-R-3|PACAP-R3|VIP-R-2|VPAC2|VPAC2R|VPCAP2R vasoactive intestinal peptide receptor 2 protein-coding 591-162 chr8 34475054 34475444 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -308672 NR_125746 103689844 Hs.590682 NR_125746 ENSG00000254344 LINC01288 TCONS_00014671 long intergenic non-protein coding RNA 1288 ncRNA 312-456 chr6 112571471 112571776 + 2 NA Intergenic Intergenic 224293 NM_001013734 442247 Hs.448264 NM_001013734 ENSG00000251258 RFPL4B RNF211 ret finger protein like 4B protein-coding 341-291 chr20 22323830 22324101 + 2 NA Intergenic Intergenic -41164 NR_110615 101929663 Hs.143562 NR_110615 ENSG00000225321 LINC01427 - long intergenic non-protein coding RNA 1427 ncRNA 451-15 chr1 181772584 181772958 + 2 NA intron (NM_001205293, intron 37 of 47) intron (NM_001205293, intron 37 of 47) 288941 NM_001009992 127665 Hs.684328 NM_001009992 ENSG00000179930 ZNF648 - zinc finger protein 648 protein-coding 233-269 chr4 102059743 102059955 + 2 NA intron (NM_017935, intron 11 of 16) MIRb|SINE|MIR 246007 NM_001083907 55024 Hs.480400 NM_017935 ENSG00000153064 BANK1 BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 451-195 chr6 66222854 66223149 + 2 NA Intergenic L1M5|LINE|L1 435122 NR_026540 442229 Hs.390414 NR_026540 SLC25A51P1 MCART3P|bA707M13.1 SLC25A51 pseudogene 1 pseudo 263-200 chr2 76105164 76105347 + 2 NA Intergenic L1MC3|LINE|L1 -394340 NM_001201334 6936 Hs.303808 NM_003203 ENSG00000005436 GCFC2 C2orf3|DNABF|GCF|TCF9 GC-rich sequence DNA-binding factor 2 protein-coding 324-416 chr5 9969915 9970149 + 2 NA Intergenic L1M1|LINE|L1 -66208 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 279-261 chr3 88103562 88103766 + 2 NA intron (NM_001350135, intron 2 of 6) L1MCc|LINE|L1 44409 NM_001366097 55279 Hs.591650 NM_018293 ENSG00000175105 ZNF654 - zinc finger protein 654 protein-coding 287-320 chr5 83455483 83455717 + 2 NA Intergenic L1MA9|LINE|L1 -16074 NM_001164098 1462 Hs.643801 NM_004385 ENSG00000038427 VCAN CSPG2|ERVR|GHAP|PG-M|WGN|WGN1 versican protein-coding 501-186 chr4 30996583 30996906 + 2 NA intron (NM_001173523, intron 2 of 2) intron (NM_001173523, intron 2 of 2) -174400 NR_125935 102723778 Hs.210739 NR_125935 ENSG00000251182 LINC02497 - long intergenic non-protein coding RNA 2497 ncRNA 432-219 chr5 46166078 46166358 + 2 NA Intergenic ALR/Alpha|Satellite|centr -469838 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 503-28 chr10 50282854 50283285 + 2 NA Intergenic L2a|LINE|L2 -34459 NM_001143974 56624 Hs.512645 NM_019893 ENSG00000188611 ASAH2 BCDase|HNAC1|LCDase|N-CDase|NCDase N-acylsphingosine amidohydrolase 2 protein-coding 330-511 chr8 64602366 64602549 + 2 NA intron (NM_004820, intron 5 of 5) intron (NM_004820, intron 5 of 5) -20565 NR_152770 401463 Hs.651960 NR_015374 ENSG00000254102 LOC401463 - uncharacterized LOC401463 ncRNA 337-122 chr12 104669946 104670207 + 2 NA intron (NM_018413, intron 2 of 2) intron (NM_018413, intron 2 of 2) 78443 NR_037487 100500843 NR_037487 ENSG00000264295 MIR3922 - microRNA 3922 ncRNA 422-211 chr4 66493462 66493841 + 2 NA Intergenic Intergenic 216827 NR_031673 100302177 NR_031673 ENSG00000221563 MIR1269A MIR1269|MIRN1269|hsa-mir-1269|hsa-mir-1269a microRNA 1269a ncRNA 146-28 chr14 86309968 86310093 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 375352 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 211-233 chr5 45507892 45508038 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 188415 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 291-67 chr11 19124461 19124722 + 2 NA intron (NM_001001483, intron 1 of 15) intron (NM_001001483, intron 1 of 15) 7423 NM_019028 54503 Hs.188569 NM_019028 ENSG00000177054 ZDHHC13 HIP14L|HIP3RP zinc finger DHHC-type containing 13 protein-coding 274-243 chr20 54732337 54732585 + 2 NA Intergenic Intergenic 256868 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 470-252 chr7 54875842 54876212 + 2 NA Intergenic L1M4b|LINE|L1 116714 NR_110040 100996654 Hs.127991 NR_110040 LOC100996654 - uncharacterized LOC100996654 ncRNA 285-287 chr3 174350437 174350630 + 2 NA Intergenic Intergenic -429737 NR_046664 100874010 Hs.624265 NR_046664 ENSG00000228213 NLGN1-AS1 - NLGN1 antisense RNA 1 ncRNA 364-37 chr1 217147465 217147692 + 2 NA Intergenic L1MC1|LINE|L1 -9876 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 238-12 chr1 98333087 98333293 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 122479 NR_046088 729987 Hs.683961 NR_046088 ENSG00000226053 LINC01776 - long intergenic non-protein coding RNA 1776 ncRNA 279-187 chr2 99848943 99849195 + 2 NA intron (NM_001025108, intron 6 of 23) L3|LINE|CR1 256514 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 259-437 chr9 123832762 123832941 + 2 NA intron (NM_001352968, intron 2 of 18) L1ME3A|LINE|L1 97275 NM_001352966 57706 Hs.744995 NM_020946 ENSG00000119522 DENND1A FAM31A|KIAA1608 DENN domain containing 1A protein-coding 314-185 chr15 49690727 49691033 + 2 NA Intergenic L2a|LINE|L2 69832 NM_020234 56986 Hs.127432 NM_020234 ENSG00000104047 DTWD1 MDS009 DTW domain containing 1 protein-coding 475-173 chr3 11069339 11069652 + 2 NA Intergenic LOR1-int|LTR|ERV1 -50271 NR_046647 100874090 Hs.628542 NR_046647 ENSG00000232287 SLC6A1-AS1 - SLC6A1 antisense RNA 1 ncRNA 378-246 chr2 150341999 150342268 + 2 NA Intergenic MIRc|SINE|MIR -85126 NR_146972 105373683 NR_146972 ENSG00000231420 LINC01817 - long intergenic non-protein coding RNA 1817 ncRNA 429-245 chr5 161925261 161925544 + 2 NA intron (NR_126372, intron 1 of 2) L2b|LINE|L2 74677 NM_001127648 2554 Hs.175934 NM_000806 ENSG00000022355 GABRA1 ECA4|EIEE19|EJM|EJM5 gamma-aminobutyric acid type A receptor alpha1 subunit protein-coding 469-209 chr5 7639809 7640208 + 2 NA intron (NM_020546, intron 4 of 24) intron (NM_020546, intron 4 of 24) 211125 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 450-80 chr14 45863669 45863960 + 2 NA Intergenic Intergenic -148212 NR_146546 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 272-263 chr3 39646584 39646850 + 2 NA Intergenic L1ME3A|LINE|L1 144651 NM_001278323 4336 Hs.121333 NM_182935 ENSG00000168314 MOBP - myelin associated oligodendrocyte basic protein protein-coding 333-513 chr6 132927007 132927261 + 2 NA Intergenic Intergenic 109915 NR_002436 594839 Hs.671378 NR_002436 ENSG00000200534 SNORA33 ACA33 small nucleolar RNA, H/ACA box 33 snoRNA 303-341 chr5 5957387 5957670 + 2 NA Intergenic LTR28C|LTR|ERV1 379764 NR_028351 401172 Hs.376760 NM_001001702 ENSG00000250490 LINC02145 - long intergenic non-protein coding RNA 2145 ncRNA 507-260 chr8 126850647 126850970 + 2 NA Intergenic Intergenic -162346 NR_045262 100750225 Hs.571530 NR_045262 ENSG00000253438 PCAT1 PCA1|PCAT-1 prostate cancer associated transcript 1 ncRNA 312-114 chr12 118913135 118913379 + 2 NA Intergenic Intergenic -68284 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 788-3 chr10 53460366 53460900 + 2 NA Intergenic L1MD2|LINE|L1 -688933 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 295-291 chr3 40241468 40241743 + 2 NA intron (NM_001284426, intron 10 of 14) MER103C|DNA|hAT-Charlie 68093 NR_033965 440952 Hs.660388 NR_033965 ENSG00000280739 EIF1B-AS1 - EIF1B antisense RNA 1 ncRNA 198-138 chr2 167639108 167639303 + 2 NA Intergenic Intergenic -179467 NM_020981 8708 Hs.735833 NM_020981 ENSG00000172318 B3GALT1 beta3Gal-T1 beta-1,3-galactosyltransferase 1 protein-coding 602-23 chr11 105745788 105746253 + 2 NA intron (NR_046356, intron 2 of 16) LTR101_Mam|LTR|ERVL 135314 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 308-442 chr6 159377336 159377542 + 2 NA Intergenic L2b|LINE|L2 -6092 NR_125873 102724053 Hs.98463 NR_125873 ENSG00000234777 LINC02529 - long intergenic non-protein coding RNA 2529 ncRNA 357-18 chr1 177518780 177519060 + 2 NA Intergenic Intergenic 167334 NR_126001 102724661 Hs.146628 NR_126001 LINC01645 - long intergenic non-protein coding RNA 1645 ncRNA 975-18 chr7 26494859 26495662 + 2 NA intron (NR_148500, intron 4 of 5) MamRep434|DNA|TcMar-Tigger 43565 NR_022006 9808 Hs.69749 NM_014769 ENSG00000122548 KIAA0087 - KIAA0087 lncRNA ncRNA 482-100 chr17 71151588 71151934 + 2 NA intron (NR_104152, intron 2 of 3) intron (NR_104152, intron 2 of 3) 50418 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 340-280 chr2 137990837 137991079 + 2 NA intron (NM_006895, intron 2 of 5) MER21A|LTR|ERVL 26485 NM_006895 3176 Hs.42151 NM_006895 ENSG00000150540 HNMT HMT|HNMT-S1|HNMT-S2|MRT51 histamine N-methyltransferase protein-coding 407-292 chr7 41035471 41035805 + 2 NA Intergenic Intergenic -55699 NR_110831 101928744 Hs.639767 NR_110831 ENSG00000232458 LINC01450 - long intergenic non-protein coding RNA 1450 ncRNA 406-187 chr3 53304988 53305341 + 2 NA intron (NM_018403, intron 5 of 9) L1ME1|LINE|L1 27963 NR_145715 109617024 NR_145715 ENSG00000207109 SNORD38C - small nucleolar RNA, C/D box 38C snoRNA 333-564 chr8 62000645 62000965 + 2 NA Intergenic L1M5|LINE|L1 110966 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 155-92 chr7 6232292 6232401 + 2 NA intron (NM_001367581, intron 1 of 13) intron (NM_001367581, intron 1 of 13) 40278 NM_001367581 9265 Hs.487479 NM_004227 ENSG00000008256 CYTH3 ARNO3|GRP1|PSCD3|cytohesin-3 cytohesin 3 protein-coding 642-85 chr4 159387287 159387718 + 2 NA Intergenic L1MDa|LINE|L1 119693 NM_014247 9693 Hs.744884 NM_014247 ENSG00000109756 RAPGEF2 CNrasGEF|NRAPGEP|PDZ-GEF1|PDZGEF1|RA-GEF|RA-GEF-1|RAGEF|Rap-GEP|nRap GEP Rap guanine nucleotide exchange factor 2 protein-coding 237-4 chr1 45227765 45227937 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -21246 NM_020883 57643 Hs.656613 NM_020883 ENSG00000162415 ZSWIM5 - zinc finger SWIM-type containing 5 protein-coding 602-96 chr4 115070093 115070524 + 2 NA intron (NM_022569, intron 2 of 13) L1PA13|LINE|L1 43312 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 191-25 chr10 21162815 21162975 + 2 NA intron (NM_001173484, intron 2 of 6) intron (NM_001173484, intron 2 of 6) -11095 NR_046283 100128511 Hs.635827 NR_046283 ENSG00000231920 NEBL-AS1 - NEBL antisense RNA 1 ncRNA 207-134 chr2 51087487 51087613 + 2 NA intron (NR_135237, intron 2 of 10) intron (NR_135237, intron 2 of 10) 54949 NR_135237 730100 Hs.640140 NR_135237 ENSG00000231918 LOC730100 - uncharacterized LOC730100 ncRNA 316-145 chr12 118828010 118828181 + 2 NA intron (NR_134997, intron 2 of 2) intron (NR_134997, intron 2 of 2) 5441 NR_134997 105370016 Hs.550627 NR_134997 ENSG00000255814 LINC02439 - long intergenic non-protein coding RNA 2439 ncRNA 319-244 chr2 72100808 72101090 + 2 NA Intergenic L1ME1|LINE|L1 46913 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 329-287 chr2 134680318 134680567 + 2 NA intron (NM_030923, intron 2 of 7) AluJb|SINE|Alu 38558 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 186 chr1 56523273 56523454 + 2 NA intron (NM_003713, intron 4 of 5) intron (NM_003713, intron 4 of 5) 56200 NM_003713 8613 Hs.405156 NM_003713 ENSG00000162407 PLPP3 Dri42|LPP3|PAP2B|PPAP2B|VCIP phospholipid phosphatase 3 protein-coding 405-97 chr15 87131958 87132280 + 2 NA Intergenic L1PA17|LINE|L1 -143693 NR_135683 102724452 Hs.128062 NR_135683 ENSG00000259620 LOC102724452 - uncharacterized LOC102724452 ncRNA 296-280 chr22 43868837 43868997 + 2 NA Intergenic AluJb|SINE|Alu -6404 NM_014351 25830 Hs.189810 NM_014351 ENSG00000130540 SULT4A1 BR-STL-1|BRSTL1|DJ388M5.3|NST|SULTX3|hBR-STL-1 sulfotransferase family 4A member 1 protein-coding 508-23 chr10 17310222 17310726 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -76462 NR_034129 100128098 Hs.530588 NR_034129 ENSG00000204832 ST8SIA6-AS1 - ST8SIA6 antisense RNA 1 ncRNA 634-66 chr18 75689207 75689614 + 2 NA Intergenic Intergenic 22993 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 307-171 chr16 24963719 24964003 + 2 NA intron (NM_001006634, intron 7 of 19) intron (NM_001006634, intron 7 of 19) 51508 NM_018054 55114 Hs.373793 NM_018054 ENSG00000140750 ARHGAP17 MST066|MST110|MSTP038|MSTP066|MSTP110|NADRIN|PP367|PP4534|RICH-1|RICH1|WBP15 Rho GTPase activating protein 17 protein-coding 229-175 chr2 41115292 41115440 + 2 NA Intergenic L1MEg|LINE|L1 -602931 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 242-270 chr4 88633604 88633789 + 2 NA intron (NM_001318505, intron 3 of 8) L1MEf|LINE|L1 41216 NM_001318505 8916 Hs.35804 NM_014606 ENSG00000138641 HERC3 - HECT and RLD domain containing E3 ubiquitin protein ligase 3 protein-coding 498-59 chr11 104514953 104515382 + 2 NA Intergenic AluJr|SINE|Alu 94135 NR_120585 102723895 Hs.48803 NR_120585 ENSG00000256422 LINC02552 - long intergenic non-protein coding RNA 2552 ncRNA 269-426 chr9 81304339 81304508 + 2 NA Intergenic L1MCa|LINE|L1 385112 NM_001303103 7088 Hs.197320 NM_005077 ENSG00000196781 TLE1 ESG|ESG1|GRG1 TLE family member 1, transcriptional corepressor protein-coding 168-128 chrX 63043305 63043455 + 2 NA Intergenic PRIMA41-int|LTR|ERV1 307952 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 376-64 chr11 7091537 7091855 + 2 NA TTS (NM_014469) TTS (NM_014469) 2698 NM_014469 27288 Hs.121605 NM_014469 ENSG00000170748 RBMXL2 HNRNPG-T|HNRNPGT|HNRPGT RBMX like 2 protein-coding 472-270 chr6 57174813 57175202 + 2 NA intron (NM_004282, intron 1 of 2) intron (NM_004282, intron 1 of 2) 2681 NM_004282 9532 Hs.745046 NM_004282 ENSG00000112208 BAG2 BAG-2|dJ417I1.2 BCL2 associated athanogene 2 protein-coding 322-502 chr7 88513716 88513887 + 2 NA Intergenic Intergenic -206907 NM_001205316 79689 Hs.521008 NM_024636 ENSG00000127954 STEAP4 STAMP2|SchLAH|TIARP|TNFAIP9 STEAP4 metalloreductase protein-coding 274-23 chr1 211153390 211153565 + 2 NA Intergenic L1M1|LINE|L1 -19329 NM_002238 3756 Hs.553187 NM_002238 ENSG00000143473 KCNH1 EAG|EAG1|Kv10.1|TMBTS|ZLS1|h-eag|hEAG1 potassium voltage-gated channel subfamily H member 1 protein-coding 160-51 chr20 44813157 44813278 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -2671 NM_001205317 140730 Hs.517065 NM_182970 ENSG00000101098 RIMS4 C20orf190|RIM 4|RIM-4|RIM4|RIM4-gamma|RIM4gamma regulating synaptic membrane exocytosis 4 protein-coding 232-131 chr17 35689921 35690141 + 2 NA intron (NM_001030006, intron 18 of 21) L1MEf|LINE|L1 -41608 NM_033315 91608 Hs.744994 NM_033315 ENSG00000270885 RASL10B RRP17|VTS58635 RAS like family 10 member B protein-coding 409-77 chr14 62891944 62892283 + 2 NA intron (NM_139318, intron 7 of 10) Tigger1|DNA|TcMar-Tigger 153345 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 213-104 chr16 21099039 21099193 + 2 NA intron (NM_001347886, intron 16 of 61) L2a|LINE|L2 51730 NM_001347886 55567 Hs.526500 NM_017539 ENSG00000158486 DNAH3 DNAHC3-B|DNAHC3B|HDHC8|HEL-36|HSADHC3 dynein axonemal heavy chain 3 protein-coding 350-354 chr4 81321528 81321767 + 2 NA Intergenic L1PA10|LINE|L1 -106425 NM_001282485 5593 Hs.232044 NM_006259 ENSG00000138669 PRKG2 PKG2|PRKGR2|cGK2|cGKII protein kinase cGMP-dependent 2 protein-coding 230-215 chr21 26804540 26804699 + 2 NA Intergenic Intergenic 40790 NM_006988 9510 Hs.643357 NM_006988 ENSG00000154734 ADAMTS1 C3-C5|METH1 ADAM metallopeptidase with thrombospondin type 1 motif 1 protein-coding 330-165 chr14 88099831 88100102 + 2 NA Intergenic Intergenic -73654 NR_110121 101928791 Hs.641889 NR_110121 ENSG00000258826 LINC01147 - long intergenic non-protein coding RNA 1147 ncRNA 329-525 chr7 10379917 10380169 + 2 NA Intergenic L1MA8|LINE|L1 -322633 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 395-120 chr16 13244177 13244554 + 2 NA Intergenic Tigger2a|DNA|TcMar-Tigger 342767 NM_001145204 729993 Hs.130661 NM_001145204 ENSG00000237515 SHISA9 CKAMP44 shisa family member 9 protein-coding 368-89 chr11 116019018 116019239 + 2 NA Intergenic MLT1F|LTR|ERVL-MaLR -258928 NR_034148 283143 Hs.130499 NR_034148 LINC00900 - long intergenic non-protein coding RNA 900 ncRNA 322-562 chr9 30319994 30320209 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR 88353 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 343-238 chr2 52957563 52957776 + 2 NA Intergenic MamTip2|DNA|hAT-Tip100 -255054 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 292-276 chr3 16333783 16333998 + 2 NA intron (NM_015150, intron 7 of 9) AluY|SINE|Alu 68678 NM_001330671 92106 Hs.655449 NM_138381 ENSG00000154814 OXNAD1 - oxidoreductase NAD binding domain containing 1 protein-coding 289-407 chr6 19614702 19614989 + 2 NA Intergenic L1MA4A|LINE|L1 165024 NR_134615 105374960 Hs.519913 NR_134615 LOC105374960 - uncharacterized LOC105374960 ncRNA 237-58 chr11 87542388 87542568 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 176933 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 211-219 chr4 164619690 164619836 + 2 NA Intergenic Intergenic -134368 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 310-334 chr3 98458189 98458347 + 2 NA Intergenic L1PA13|LINE|L1 -11212 NM_001004736 26339 Hs.621533 NM_001004736 ENSG00000232382 OR5K1 HSHTPCRX10|HTPCRX10|OR3-8 olfactory receptor family 5 subfamily K member 1 protein-coding 237-223 chr22 44378950 44379148 + 2 NA Intergenic L1MEg|LINE|L1 -64278 NR_109966 101927526 Hs.339290 NR_109966 ENSG00000232655 LINC01656 - long intergenic non-protein coding RNA 1656 ncRNA 396-112 chr15 46960101 46960371 + 2 NA Intergenic L1M7|LINE|L1 -223853 NM_001198999 80031 Hs.511265 NM_020858 ENSG00000137872 SEMA6D - semaphorin 6D protein-coding 444-150 chr3 26771718 26772109 + 2 NA Intergenic MamRep1151|LTR?|LTR? 77356 NM_001317811 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 186-44 chr13 62794725 62794853 + 2 NA intron (NR_120403, intron 1 of 2) intron (NR_120403, intron 1 of 2) 1903 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 318-589 chrX 65080585 65080847 + 2 NA Intergenic L1MA1|LINE|L1 -45975 NM_001178032 55906 Hs.28249 NM_018684 ENSG00000126970 ZC4H2 HCA127|KIAA1166|MRXS4|WRWF|WWS zinc finger C4H2-type containing protein-coding 219-366 chr8 120106241 120106388 + 2 NA Intergenic L1MC4a|LINE|L1 -18788 NM_021110 7373 Hs.409662 NM_021110 ENSG00000187955 COL14A1 UND collagen type XIV alpha 1 chain protein-coding 327-474 chr7 131934550 131934808 + 2 NA intron (NR_110836, intron 5 of 5) L2b|LINE|L2 24459 NR_110836 101928782 Hs.571369 NR_110836 ENSG00000224865 LOC101928782 - uncharacterized LOC101928782 ncRNA 514-287 chr8 112513159 112513646 + 2 NA intron (NM_001363185, intron 26 of 66) Tigger1|DNA|TcMar-Tigger -130091 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 272-444 chr8 70637049 70637220 + 2 NA TTS (NM_016027) TTS (NM_016027) 28557 NR_038881 286190 Hs.662204 NR_038881 ENSG00000246366 LACTB2-AS1 - LACTB2 antisense RNA 1 ncRNA 228-362 chr9 11736755 11736927 + 2 NA Intergenic Intergenic -956544 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 450-150 chr2 145995274 145995616 + 2 NA Intergenic L1M4b|LINE|L1 -591612 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 383-47 chr11 24410847 24411174 + 2 NA Intergenic Intergenic -86043 NM_001252008 338645 Hs.144138 NM_001009909 ENSG00000187398 LUZP2 KFSP2566|PRO6246 leucine zipper protein 2 protein-coding 266-8 chr1 60878281 60878467 + 2 NA Intergenic Intergenic -52790 NR_110628 101926964 Hs.650459 NR_110628 ENSG00000231252 LOC101926964 - uncharacterized LOC101926964 ncRNA 547-255 chr8 136828716 136829222 + 2 NA intron (NR_147196, intron 4 of 5) L2c|LINE|L2 298171 NR_147196 107986980 Hs.549694 NR_147196 ENSG00000254101 LINC02055 - long intergenic non-protein coding RNA 2055 ncRNA 414-97 chr15 46159705 46160032 + 2 NA Intergenic L1MA1|LINE|L1 454673 NR_135680 105370802 Hs.447522 NR_135680 ENSG00000259200 LOC105370802 - uncharacterized LOC105370802 ncRNA 352-8 chr1 59635325 59635668 + 2 NA intron (NM_001350794, intron 10 of 14) intron (NM_001350794, intron 10 of 14) 97800 NR_039861 100616409 NR_039861 ENSG00000266150 MIR4711 - microRNA 4711 ncRNA 485-120 chr19 57140411 57140838 + 2 NA intron (NM_052882, intron 2 of 4) AluJb|SINE|Alu 4578 NM_052882 114026 Hs.348622 NM_052882 ENSG00000141946 ZIM3 ZNF264|ZNF657 zinc finger imprinted 3 protein-coding 269-32 chr1 237554407 237554608 + 2 NA intron (NM_001035, intron 27 of 104) L1ME2|LINE|L1 83388 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 312-290 chr20 33516817 33517098 + 2 NA intron (NM_001032999, intron 1 of 10) intron (NM_001032999, intron 1 of 10) 26861 NM_001032999 9139 Hs.153934 NM_005093 ENSG00000078699 CBFA2T2 EHT|MTGR1|ZMYND3|p85 CBFA2/RUNX1 partner transcriptional co-repressor 2 protein-coding 383-83 chr12 73312826 73313042 + 2 NA Intergenic L1PA16|LINE|L1 153744 NR_110130 101928137 Hs.694666 NR_110130 ENSG00000258123 LINC02444 - long intergenic non-protein coding RNA 2444 ncRNA 341-545 chr8 135365697 135365946 + 2 NA Intergenic Intergenic -91635 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 411-221 chr5 10551811 10552103 + 2 NA Intergenic Intergenic -12113 NM_001164440 651746 Hs.26039 NM_001164440 ENSG00000164236 ANKRD33B - ankyrin repeat domain 33B protein-coding 276-367 chr5 38688338 38688606 + 2 NA Intergenic AluSz6|SINE|Alu 31801 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 364-248 chr20 52563276 52563607 + 2 NA Intergenic L1MA5A|LINE|L1 -57397 NR_110038 101927700 Hs.434465 NR_110038 ENSG00000234948 LINC01524 - long intergenic non-protein coding RNA 1524 ncRNA 383-253 chr3 112843432 112843655 + 2 NA intron (NM_001370552, intron 1 of 7) L1P4d|LINE|L1 2407 NM_001008784 344807 Hs.531814 NM_001008784 ENSG00000206531 CD200R1L CD200R2|CD200RLa CD200 receptor 1 like protein-coding 374-94 chr14 25641798 25642132 + 2 NA Intergenic Intergenic -591668 NM_001351940 29091 Hs.508958 NM_014178 ENSG00000168952 STXBP6 HSPC156|amisyn syntaxin binding protein 6 protein-coding 505-202 chr3 153871400 153871780 + 2 NA Intergenic L1MA2|LINE|L1 -109064 NR_146713 105374165 Hs.637991 NR_146713 LINC02006 - long intergenic non-protein coding RNA 2006 ncRNA 381-195 chr2 75656598 75656814 + 2 NA 3' UTR (NM_014763, exon 6 of 6) 3' UTR (NM_014763, exon 6 of 6) 9923 NM_014763 9801 Hs.44024 NM_014763 ENSG00000115364 MRPL19 L19mt|MRP-L15|MRP-L19|MRPL15|RLX1|RPML15 mitochondrial ribosomal protein L19 protein-coding 341-450 chr5 150946898 150947100 + 2 NA promoter-TSS (NR_026867) promoter-TSS (NR_026867) -415 NR_026867 134466 Hs.661876 NR_026867 ZNF300P1 - zinc finger protein 300 pseudogene 1 pseudo 495-157 chr3 76207929 76208291 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -422561 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 685 chr1 32336195 32336816 + 2 NA promoter-TSS (NR_052852) promoter-TSS (NR_052852) -272 NR_052852 65108 Hs.75061 NM_023009 ENSG00000175130 MARCKSL1 F52|MACMARCKS|MLP|MLP1|MRP MARCKS like 1 protein-coding 484-132 chr2 81498225 81498563 + 2 NA Intergenic Intergenic -31448 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 349-122 chr12 30231210 30231529 + 2 NA Intergenic Intergenic 445875 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 461-139 chr2 118336353 118336696 + 2 NA Intergenic L1MA7|LINE|L1 -150138 NR_144530 100506797 Hs.116176 NR_144530 ENSG00000226856 THORLNC THOR testis associated oncogenic lncRNA ncRNA 318-289 chr2 143871566 143871827 + 2 NA Intergenic L1ME3D|LINE|L1 -65371 NR_110237 101928386 Hs.668251 NR_110237 ENSG00000232377 LOC101928386 - uncharacterized LOC101928386 ncRNA 222-336 chr7 31992988 31993150 + 2 NA intron (NM_001322059, intron 3 of 17) intron (NM_001322059, intron 3 of 17) 77338 NM_001191057 5137 Hs.143821 NM_005020 ENSG00000154678 PDE1C DFNA74|Hcam3|cam-PDE 1C|hCam-3 phosphodiesterase 1C protein-coding 454-207 chr3 89896204 89896534 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 788748 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 500-215 chr4 133667730 133668075 + 2 NA Intergenic Intergenic 518608 NM_032961 57575 Hs.192859 NM_020815 ENSG00000138650 PCDH10 OL-PCDH|PCDH19 protocadherin 10 protein-coding 131-27 chr15 60203125 60203237 + 2 NA Intergenic Intergenic 194805 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 284-81 chr12 12511731 12511894 + 2 NA intron (NM_030640, intron 3 of 6).2 intron (NM_030640, intron 3 of 6).2 51051 NM_030640 80824 Hs.536535 NM_030640 ENSG00000111266 DUSP16 MKP-7|MKP7 dual specificity phosphatase 16 protein-coding 240-433 chr8 141824309 141824478 + 2 NA Intergenic HAL1|LINE|L1 -38080 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 663-23 chr11 115099474 115099901 + 2 NA Intergenic MLT2C1|LTR|ERVL -233890 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 272-456 chr8 110533801 110533944 + 2 NA Intergenic Intergenic 493561 NR_125417 101927459 Hs.575543 NR_125416 ENSG00000253877 LINC01608 - long intergenic non-protein coding RNA 1608 ncRNA 373-327 chr5 93154749 93154997 + 2 NA Intergenic MER119|DNA|hAT-Charlie 416470 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 387-140 chr17 50247717 50248061 + 2 NA Intergenic AluSx1|SINE|Alu -23517 NM_001168215 162461 Hs.224630 NM_153229 ENSG00000167105 TMEM92 - transmembrane protein 92 protein-coding 447-53 chr12 2781367 2781651 + 2 NA intron (NR_146317, intron 2 of 3) AluSx3|SINE|Alu -13461 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FKBP prolyl isomerase 4 protein-coding 271-254 chr22 44631540 44631759 + 2 NA Intergenic L1MB7|LINE|L1 -6230 NR_044991 414351 Hs.572878 NR_044991 LINC00229 C22orf10|NCRNA00229|dJ474I12.C22.2 long intergenic non-protein coding RNA 229 ncRNA 332-367 chr4 32086497 32086728 + 2 NA intron (NR_125936, intron 1 of 2) MER52-int|LTR|ERV1 -64190 NR_134682 105377651 Hs.581935 NR_134682 LOC105377651 - uncharacterized LOC105377651 ncRNA 243-308 chr3 189524339 189524544 + 2 NA Intergenic L1PA16|LINE|L1 -72305 NM_001329964 8626 Hs.137569 NM_003722 ENSG00000073282 TP63 AIS|B(p51A)|B(p51B)|EEC3|KET|LMS|NBP|OFC8|RHS|SHFM4|TP53CP|TP53L|TP73L|p40|p51|p53CP|p63|p73H|p73L tumor protein p63 protein-coding 372-145 chr14 63056031 63056268 + 2 NA Intergenic Intergenic -10691 NM_172375 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 573-214 chrX 39027102 39027451 + 2 NA Intergenic L1MA5|LINE|L1 -223393 NR_046706 100874211 Hs.662789 NR_046706 MID1IP1-AS1 - MID1IP1 antisense RNA 1 ncRNA 691-65 chr5 37535614 37536055 + 2 NA intron (NM_001345998, intron 9 of 17) MIR|SINE|MIR 156516 NM_018034 55100 Hs.213690 NM_018034 ENSG00000082068 WDR70 - WD repeat domain 70 protein-coding 194-34 chr11 99508551 99508678 + 2 NA intron (NM_001243271, intron 2 of 20) intron (NM_001243271, intron 2 of 20) -47531 NM_175566 53942 Hs.656783 NM_014361 ENSG00000149972 CNTN5 HNB-2s|NB-2 contactin 5 protein-coding 225-37 chr10 61475130 61475280 + 2 NA intron (NR_120643, intron 2 of 5) intron (NR_120643, intron 2 of 5) -4836 NR_120645 101928781 Hs.568856 NR_120643 TMEM26-AS1 - TMEM26 antisense RNA 1 ncRNA 366-289 chr3 160584102 160584359 + 2 NA Intergenic L1MA4|LINE|L1 -18659 NM_002268 3840 Hs.467866 NM_002268 ENSG00000186432 KPNA4 IPOA3|QIP1|SRP3 karyopherin subunit alpha 4 protein-coding 234-230 chr3 26026044 26026213 + 2 NA Intergenic L1M3de|LINE|L1 -152433 NR_034055 285326 Hs.145246 NR_034055 ENSG00000230891 LINC00692 - long intergenic non-protein coding RNA 692 ncRNA 260-221 chr2 145466250 145466424 + 2 NA Intergenic Intergenic 798370 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 382-417 chr8 110045207 110045529 + 2 NA Intergenic Intergenic -69597 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 421-200 chr3 190470560 190470815 + 2 NA Intergenic L1MA4|LINE|L1 -20811 NM_207316 131920 Hs.335321 NM_207316 ENSG00000198398 TMEM207 UNQ846 transmembrane protein 207 protein-coding 314-30 chr1 160486316 160486608 + 2 NA 3' UTR (NM_052931, exon 8 of 8) 3' UTR (NM_052931, exon 8 of 8) 36793 NM_001184715 114836 Hs.492348 NM_052931 ENSG00000162739 SLAMF6 CD352|KALI|KALIb|Ly108|NTB-A|NTBA|SF2000 SLAM family member 6 protein-coding 458-21 chr10 54898913 54899195 + 2 NA intron (NM_001354404, intron 3 of 34) MIR3|SINE|MIR -97763 NM_001142767 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 499-61 chr13 33586093 33586511 + 2 NA intron (NM_001243476, intron 3 of 17) MIRc|SINE|MIR 90492 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 422-200 chr3 187493901 187494293 + 2 NA Intergenic L1PB2|LINE|L1 47051 NR_146716 105374261 Hs.535726 NR_146716 LINC02041 - long intergenic non-protein coding RNA 2041 ncRNA 361-24 chr1 197067710 197068027 + 2 NA promoter-TSS (NM_001994) promoter-TSS (NM_001994) -601 NM_001994 2165 Hs.435782 NM_001994 ENSG00000143278 F13B FXIIIB coagulation factor XIII B chain protein-coding 429-77 chr12 130241225 130241570 + 2 NA Intergenic L2|LINE|L2 78938 NM_007197 11211 Hs.31664 NM_007197 ENSG00000111432 FZD10 CD350|FZ-10|Fz10|FzE7|hFz10 frizzled class receptor 10 protein-coding 335-186 chr16 54435458 54435664 + 2 NA Intergenic Intergenic -64862 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 218-110 chr16 8374622 8374804 + 2 NA Intergenic MIRb|SINE|MIR 215125 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 424-292 chr9 90283717 90284035 + 2 NA Intergenic L1MB8|LINE|L1 149613 NR_109795 101927873 Hs.598482 NR_109795 ENSG00000231107 LINC01508 - long intergenic non-protein coding RNA 1508 ncRNA 547-11 chr1 216640012 216640389 + 2 NA intron (NM_001243505, intron 3 of 6) intron (NM_001243505, intron 3 of 6) 83229 NM_001438 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 345-224 chr18 60312497 60312799 + 2 NA Intergenic Intergenic 60127 NM_005912 4160 Hs.532833 NM_005912 ENSG00000166603 MC4R BMIQ20 melanocortin 4 receptor protein-coding 206-218 chr5 124039597 124039735 + 2 NA Intergenic Intergenic 398854 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 463-281 chr8 71488764 71489098 + 2 NA intron (NM_001370334, intron 2 of 19) L4_A_Mam|LINE|RTE-X 58773 NM_172059 2138 Hs.444971 NM_000503 ENSG00000104313 EYA1 BOP|BOR|BOS1|OFC1 EYA transcriptional coactivator and phosphatase 1 protein-coding 186-59 chr16 83988401 83988517 + 2 NA intron (NM_019065, intron 5 of 12) intron (NM_019065, intron 5 of 12) 19811 NM_001329749 54550 Hs.140950 NM_019065 ENSG00000103154 NECAB2 EFCBP2|stip-2 N-terminal EF-hand calcium binding protein 2 protein-coding 657-28 chr14 68468008 68468557 + 2 NA intron (NM_001321818, intron 10 of 10) intron (NM_001321818, intron 10 of 10) 160505 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 318-85 chr10 105810423 105810705 + 2 NA intron (NR_120625, intron 3 of 3) MLT1H1|LTR|ERVL-MaLR 9769 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 189-55 chr14 60477167 60477336 + 2 NA intron (NM_174978, intron 5 of 17) L2|LINE|L2 8812 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 310-535 chr8 124678455 124678632 + 2 NA intron (NM_001282971, intron 3 of 14) THE1B|LTR|ERVL-MaLR 49930 NM_001363301 9788 Hs.336994 NM_014751 ENSG00000170873 MTSS1 MIM|MIMA|MIMB MTSS I-BAR domain containing 1 protein-coding 223-138 chr19 34942727 34942894 + 2 NA intron (NR_024018, intron 5 of 5) intron (NR_024018, intron 5 of 5) 15907 NR_024018 90075 Hs.657402 NM_194325 ENSG00000168661 ZNF30 KOX28 zinc finger protein 30 protein-coding 375-227 chr2 180171009 180171325 + 2 NA Intergenic L1MA8|LINE|L1 -163870 NM_020943 57703 Hs.311363 NM_020943 ENSG00000163510 CWC22 EIF4GL|NCM|fSAPb CWC22 spliceosome associated protein homolog protein-coding 529-173 chr5 60980285 60980774 + 2 NA intron (NM_174889, intron 1 of 3) AluSx3|SINE|Alu 35324 NM_174889 91942 Hs.591757 NM_174889 ENSG00000164182 NDUFAF2 B17.2L|MC1DN10|MMTN|NDUFA12L|mimitin NADH:ubiquinone oxidoreductase complex assembly factor 2 protein-coding 430-323 chr8 133999671 134000030 + 2 NA Intergenic Intergenic 113354 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 116-48 chr8 119805294 119805392 + 2 NA intron (NM_003184, intron 4 of 25) MIR3|SINE|MIR 27498 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 130-15 chr11 58791011 58791129 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 53634 NM_145016 219970 Hs.254271 NM_145016 ENSG00000156689 GLYATL2 BXMAS2-10|GATF-B glycine-N-acyltransferase like 2 protein-coding 230-180 chr2 132829076 132829236 + 2 NA intron (NM_207481, intron 11 of 17) Tigger20a|DNA|TcMar-Tigger -86401 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 134-73 chr5 150771578 150771663 + 2 NA Intergenic L1MB8|LINE|L1 -6326 NM_032947 85027 Hs.29444 NM_032947 ENSG00000256235 SMIM3 C5orf62|MST150|NID67 small integral membrane protein 3 protein-coding 705-48 chr2 28787975 28788514 + 2 NA intron (NM_206876, intron 6 of 8) L1M5|LINE|L1 -22590 NM_182756 245711 Hs.511956 NM_182756 ENSG00000163806 SPDYA RINGO3|RINGOA|SPDY1|SPY1 speedy/RINGO cell cycle regulator family member A protein-coding 353-486 chr7 49457657 49457997 + 2 NA Intergenic Intergenic -315811 NM_198570 375567 Hs.629302 NM_198570 ENSG00000188730 VWC2 PSST739|UNQ739 von Willebrand factor C domain containing 2 protein-coding 393-209 chr3 3624583 3624837 + 2 NA Intergenic L1MA9|LINE|L1 -174721 NM_001324189 57633 Hs.163244 NM_020873 ENSG00000175928 LRRN1 FIGLER3|NLRR-1 leucine rich repeat neuronal 1 protein-coding 195-182 chr5 7030493 7030676 + 2 NA Intergenic MER4-int|LTR|ERV1 -202663 NR_036242 100422999 NR_036242 ENSG00000283420 MIR4278 - microRNA 4278 ncRNA 337-34 chr1 229466611 229466928 + 2 NA intron (NM_018230, intron 15 of 25) intron (NM_018230, intron 15 of 25) -32673 NM_001100 58 Hs.1288 NM_001100 ENSG00000143632 ACTA1 ACTA|ASMA|CFTD|CFTD1|CFTDM|MPFD|NEM1|NEM2|NEM3|SHPM actin alpha 1, skeletal muscle protein-coding 225-306 chr6 41634278 41634475 + 2 NA Intergenic MIRb|SINE|MIR -2642 NM_001300804 4188 Hs.520119 NM_005586 ENSG00000112559 MDFI I-MF|I-mfa MyoD family inhibitor protein-coding 391-123 chr16 4060454 4060811 + 2 NA intron (NM_001116, intron 2 of 10) L1M4a2|LINE|L1 55810 NM_001116 115 Hs.391860 NM_001116 ENSG00000162104 ADCY9 AC9|ACIX adenylate cyclase 9 protein-coding 692-105 chr8 138451004 138451497 + 2 NA intron (NM_001362965, intron 1 of 19) MLT1N2|LTR|ERVL-MaLR 46011 NM_015912 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 308-415 chr6 37304404 37304594 + 2 NA intron (NR_130108, intron 8 of 12) L1ME2|LINE|L1 -46344 NR_104443 221468 Hs.520101 NM_145316 ENSG00000172738 TMEM217 C6orf128|dJ355M6.2 transmembrane protein 217 protein-coding 407-53 chr11 88071574 88071835 + 2 NA Intergenic L1MCc|LINE|L1 103739 NM_022337 23682 Hs.591975 NM_022337 ENSG00000123892 RAB38 NY-MEL-1|rrGTPbp RAB38, member RAS oncogene family protein-coding 180-50 chr14 83950175 83950272 + 2 NA Intergenic L1MA4A|LINE|L1 1307591 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 332-348 chr3 131251224 131251505 + 2 NA intron (NM_001353036, intron 14 of 14) intron (NM_001353036, intron 14 of 14) -110481 NR_002949 152195 Hs.380350 NM_194289 ENSG00000246082 NUDT16P1 NUDT16P nudix hydrolase 16 pseudogene 1 pseudo 369-192 chr2 41843505 41843804 + 2 NA Intergenic Intergenic -33901 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 197-128 chr22 41423404 41423560 + 2 NA Intergenic Intergenic 23319 NM_016272 10766 Hs.474978 NM_016272 ENSG00000183864 TOB2 APRO5|TOB4|TOBL|TROB2 transducer of ERBB2, 2 protein-coding 404-201 chr21 45262995 45263311 + 2 NA TTS (NM_015227) TTS (NM_015227) 24742 NM_015227 23275 Hs.592164 NM_015227 ENSG00000186866 POFUT2 C21orf80|FUT13 protein O-fucosyltransferase 2 protein-coding 486-270 chr7 15833790 15834141 + 2 NA Intergenic Intergenic 145587 NR_110094 101927524 Hs.386790 NR_110094 LINC02587 MEOX2-AS1 long intergenic non-protein coding RNA 2587 ncRNA 537-183 chr4 168981642 168982093 + 2 NA Intergenic L1PA15|LINE|L1 28388 NM_032783 84869 Hs.659311 NM_032783 ENSG00000145439 CBR4 SDR45C1 carbonyl reductase 4 protein-coding 575-111 chr22 30455265 30455670 + 2 NA Intergenic AluSz|SINE|Alu 16580 NM_001257379 266629 Hs.505601 NM_174975 ENSG00000100012 SEC14L3 TAP2 SEC14 like lipid binding 3 protein-coding 491-32 chr11 38777872 38778208 + 2 NA Intergenic L1PREC2|LINE|L1 129182 NR_120553 101928536 Hs.144776 NR_120553 ENSG00000254562 LINC01493 - long intergenic non-protein coding RNA 1493 ncRNA 144-71 chr4 98036117 98036194 + 2 NA intron (NM_174952, intron 5 of 10) L1PA13|LINE|L1 107321 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 363-105 chr12 87721003 87721303 + 2 NA Intergenic Intergenic -47659 NR_149056 110806294 Hs.615803 NR_149056 LINC02258 - long intergenic non-protein coding RNA 2258 ncRNA 272-149 chr17 34746625 34746789 + 2 NA Intergenic L1ME1|LINE|L1 165958 NM_001304438 124842 Hs.310482 NM_207313 ENSG00000181291 TMEM132E DFNB99 transmembrane protein 132E protein-coding 290-215 chr2 100646572 100646780 + 2 NA Intergenic Intergenic 42937 NR_146956 105373507 NR_146956 LINC01849 - long intergenic non-protein coding RNA 1849 ncRNA 347-130 chr14 56374745 56375019 + 2 NA Intergenic Intergenic -139449 NR_135241 101927690 Hs.385477 NR_135241 ENSG00000258803 LOC101927690 - uncharacterized LOC101927690 ncRNA 428-216 chr4 92088769 92089123 + 2 NA Intergenic MER41C|LTR|ERV1 188356 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 611-111 chr4 134002200 134002593 + 2 NA Intergenic Intergenic 199393 NM_001114734 132430 Hs.49889 NM_001114734 ENSG00000254535 PABPC4L - poly(A) binding protein cytoplasmic 4 like protein-coding 271-304 chr4 46764888 46765034 + 2 NA intron (NM_130902, intron 2 of 2) intron (NM_130902, intron 2 of 2) 144284 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 298-175 chr18 34288919 34289191 + 2 NA Intergenic MSTB|LTR|ERVL-MaLR -65504 NM_001198546 8715 Hs.514795 NM_003787 ENSG00000101746 NOL4 CT125|HRIHFB2255|NOLP nucleolar protein 4 protein-coding 545-114 chr2 103757138 103757634 + 2 NA Intergenic L1M4b|LINE|L1 650946 NR_037885 100287010 Hs.694603 NR_037885 LOC100287010 - uncharacterized LOC100287010 ncRNA 628-123 chr7 84600574 84601185 + 2 NA Intergenic HERVL74-int|LTR|ERVL 68403 NR_110079 101927378 Hs.539042 NR_110079 ENSG00000235139 LOC101927378 - uncharacterized LOC101927378 ncRNA 290-20 chr1 156078555 156078789 + 2 NA intron (NM_001093725, intron 1 of 1) intron (NM_001093725, intron 1 of 1) 3793 NM_001093725 92312 Hs.591496 NM_001093725 ENSG00000254726 MEX3A MEX-3A|RKHD4|RNF162 mex-3 RNA binding family member A protein-coding 413-39 chr10 64791832 64792141 + 2 NA Intergenic Intergenic -33542 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 578-7 chr1 78555173 78555681 + 2 NA Intergenic L1PA17|LINE|L1 64453 NM_001039585 5737 Hs.654365 NM_000959 ENSG00000122420 PTGFR FP prostaglandin F receptor protein-coding 203-100 chr19 36586709 36586896 + 2 NA intron (NR_027239, intron 2 of 2) intron (NR_027239, intron 2 of 2) -13510 NM_020951 57711 Hs.654960 NM_020951 ENSG00000186020 ZNF529 - zinc finger protein 529 protein-coding 298-487 chr8 140351390 140351603 + 2 NA intron (NM_001160372, intron 9 of 22) AluJo|SINE|Alu 106248 NM_001321646 83696 Hs.654911 NM_031466 ENSG00000167632 TRAPPC9 IBP|IKBKBBP|MRT13|NIBP|T1|TRS120 trafficking protein particle complex 9 protein-coding 359-378 chr4 184108096 184108307 + 2 NA intron (NM_153343, intron 6 of 7) intron (NM_153343, intron 6 of 7) 109672 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 572-168 chr8 64762124 64762632 + 2 NA intron (NM_004820, intron 1 of 5) intron (NM_004820, intron 1 of 5) 36359 NM_001324112 9420 Hs.657330 NM_004820 ENSG00000172817 CYP7B1 CBAS3|CP7B|SPG5A cytochrome P450 family 7 subfamily B member 1 protein-coding 202-45 chr11 109988101 109988274 + 2 NA Intergenic L2a|LINE|L2 -105205 NM_033390 85463 Hs.376289 NM_033390 ENSG00000149289 ZC3H12C MCPIP3 zinc finger CCCH-type containing 12C protein-coding 510-190 chr3 165363899 165364288 + 2 NA intron (NR_125764, intron 1 of 5) intron (NR_125764, intron 1 of 5) 157133 NR_125764 103695433 Hs.570689 NR_125764 LINC01322 - long intergenic non-protein coding RNA 1322 ncRNA 358-264 chr20 51251043 51251309 + 2 NA Intergenic Intergenic 201801 NR_036162 100422889 NR_036162 ENSG00000266761 MIR3194 mir-3194 microRNA 3194 ncRNA 358-180 chr19 33735279 33735520 + 2 NA intron (NM_001127895, intron 3 of 4) intron (NM_001127895, intron 3 of 4) 50871 NM_022467 64377 Hs.165724 NM_022467 ENSG00000124302 CHST8 GALNAC4ST1|GalNAc4ST|PSS3 carbohydrate sulfotransferase 8 protein-coding 170-76 chr2 181781899 181782040 + 2 NA Intergenic Intergenic -101304 NR_146175 4760 Hs.574626 NM_002500 ENSG00000162992 NEUROD1 BETA2|BHF-1|MODY6|NEUROD|bHLHa3 neuronal differentiation 1 protein-coding 653-101 chr5 77686100 77686526 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -47616 NM_032109 23440 Hs.202247 NM_032109 ENSG00000171540 OTP - orthopedia homeobox protein-coding 237-20 chr1 173773155 173773318 + 2 NA intron (NM_014458, intron 8 of 11) AluJr4|SINE|Alu 50896 NM_001171182 91687 Hs.531856 NM_033319 ENSG00000120334 CENPL C1orf155|CENP-L|dJ383J4.3 centromere protein L protein-coding 644-41 chr2 62219141 62219773 + 2 NA intron (NM_001319075, intron 1 of 1) AluSz6|SINE|Alu 3936 NM_001319075 10678 Hs.173203 NM_006577 ENSG00000170340 B3GNT2 3-Gn-T1|3-Gn-T2|B3GN-T2|B3GNT|B3GNT-2|B3GNT1|BETA3GNT|BGNT2|BGnT-2|beta-1|beta3Gn-T1|beta3Gn-T2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 protein-coding 224-37 chr10 83640393 83640560 + 2 NA Intergenic Intergenic 36613 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 253-168 chr19 1703723 1703922 + 2 NA Intergenic AluY|SINE|Alu -49684 NM_001080488 390874 NM_001080488 ENSG00000205922 ONECUT3 OC3 one cut homeobox 3 protein-coding 323-115 chr12 64294271 64294517 + 2 NA intron (NM_001099676, intron 4 of 10) L1MB3|LINE|L1 -72098 NM_001300941 144577 Hs.444671 NM_152440 ENSG00000174206 C12orf66 - chromosome 12 open reading frame 66 protein-coding 341-242 chr2 52602740 52602983 + 2 NA Intergenic Intergenic 99754 NR_039630 100616431 NR_039630 ENSG00000264975 MIR4431 - microRNA 4431 ncRNA 400-198 chr21 29871343 29871660 + 2 NA intron (NM_000830, intron 1 of 16) MIRb|SINE|MIR 68495 NM_000830 2897 Hs.664641 NM_000830 ENSG00000171189 GRIK1 EAA3|EEA3|GLR5|GLUR5|GluK1|gluR-5 glutamate ionotropic receptor kainate type subunit 1 protein-coding 273-431 chr7 104375763 104376005 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 47228 NM_199000 375612 Hs.659164 NM_199000 ENSG00000187416 LHFPL3 LHFPL4 LHFPL tetraspan subfamily member 3 protein-coding 276-29 chr1 190230331 190230487 + 2 NA intron (NM_199051, intron 5 of 7) Charlie2a|DNA|hAT-Charlie 245601 NM_001317188 339479 Hs.65765 NM_199051 ENSG00000162670 BRINP3 DBCCR1L|DBCCR1L1|FAM5C BMP/retinoic acid inducible neural specific 3 protein-coding 271-197 chr2 62924310 62924498 + 2 NA intron (NM_001142615, intron 10 of 22) L1MA5A|LINE|L1 123307 NR_027069 100132215 Hs.656781 NR_027069 ENSG00000231609 LOC100132215 - uncharacterized LOC100132215 ncRNA 325-461 chr5 125596907 125597179 + 2 NA intron (NR_109887, intron 3 of 3) MIRb|SINE|MIR 103782 NR_109887 101927460 Hs.407582 NR_109887 ENSG00000260192 LINC02240 - long intergenic non-protein coding RNA 2240 ncRNA 612-154 chrX 50532694 50533090 + 2 NA Intergenic L2c|LINE|L2 -62067 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 207-150 chr2 136185469 136185637 + 2 NA Intergenic L1PA16|LINE|L1 -67398 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 313-226 chr2 4147184 4147460 + 2 NA Intergenic L1ME1|LINE|L1 173161 NR_136322 105373394 Hs.742693 NR_136322 LOC105373394 - uncharacterized LOC105373394 ncRNA 314-377 chr3 81399948 81400171 + 2 NA Intergenic Intergenic 361586 NM_000158 2632 Hs.436062 NM_000158 ENSG00000114480 GBE1 APBD|GBE|GSD4 1,4-alpha-glucan branching enzyme 1 protein-coding 313-300 chr2 234759603 234759771 + 2 NA Intergenic AluJb|SINE|Alu 77019 NR_132376 106144537 Hs.580616 NR_132376 ENSG00000280744 LINC01173 - long intergenic non-protein coding RNA 1173 ncRNA 507-160 chr3 70367514 70367927 + 2 NA Intergenic L1MA4|LINE|L1 -55082 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 301-406 chr6 149766011 149766213 + 2 NA intron (NM_001252051, intron 1 of 6) L1MC4|LINE|L1 16371 NM_001360456 5110 Hs.279257 NM_005389 ENSG00000120265 PCMT1 PIMT protein-L-isoaspartate (D-aspartate) O-methyltransferase protein-coding 227-211 chr21 21684479 21684642 + 2 NA Intergenic Intergenic 52759 NR_038872 378828 Hs.551009 NR_038872 ENSG00000238265 LINC00317 C21orf117|NCRNA00317|PRED89 long intergenic non-protein coding RNA 317 ncRNA 502-143 chr2 102125422 102125849 + 2 NA intron (NM_001320980, intron 1 of 11) intron (NM_001320980, intron 1 of 11) -16156 NM_001320981 3554 Hs.701982 NM_000877 ENSG00000115594 IL1R1 CD121A|D2S1473|IL-1R-alpha|IL1R|IL1RA|P80 interleukin 1 receptor type 1 protein-coding 425-216 chr4 164600970 164601339 + 2 NA Intergenic Intergenic -152977 NM_001352885 100505989 Hs.328236 NM_001352885 ENSG00000248771 SMIM31 LINC01207 small integral membrane protein 31 protein-coding 313-285 chr2 187145108 187145388 + 2 NA Intergenic L1M4|LINE|L1 -296078 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 252-327 chr5 35111645 35111806 + 2 NA intron (NR_037910, intron 1 of 7) L1ME4a|LINE|L1 6397 NM_001204317 5618 Hs.368587 NM_000949 ENSG00000113494 PRLR HPRL|MFAB|RI-PRLR|hPRLrI prolactin receptor protein-coding 223-326 chr7 106916754 106916914 + 2 NA Intergenic MLT1K|LTR|ERVL-MaLR 51355 NM_002649 5294 Hs.32942 NM_002649 ENSG00000105851 PIK3CG PI3CG|PI3K|PI3Kgamma|PIK3|p110gamma|p120-PI3K phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma protein-coding 753-34 chr2 80666517 80667006 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 353382 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 609-32 chr14 43401561 43402020 + 2 NA Intergenic L1PA16|LINE|L1 1105493 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 359-496 chr8 134621009 134621351 + 2 NA intron (NM_020863, intron 3 of 15) intron (NM_020863, intron 3 of 15) 23109 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 432-203 chr4 96520769 96521101 + 2 NA intron (NR_147149, intron 2 of 3) L2|LINE|L2 210232 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 399-45 chr10 110187119 110187389 + 2 NA Intergenic L1MD1|LINE|L1 -20351 NM_130439 4601 Hs.602078 NM_005962 ENSG00000119950 MXI1 MAD2|MXD2|MXI|bHLHc11 MAX interactor 1, dimerization protein protein-coding 366-278 chr3 88350137 88350401 + 2 NA intron (NM_001368167, intron 2 of 2) intron (NM_001368167, intron 2 of 2) 11813 NM_001368165 111064647 NM_001368165 CSNKA2IP - casein kinase 2 subunit alpha' interacting protein protein-coding 364-119 chr13 88413385 88413688 + 2 NA Intergenic L1PA13|LINE|L1 -127293 NR_047021 100874168 Hs.126406 NR_047021 LINC00433 - long intergenic non-protein coding RNA 433 ncRNA 312-285 chr20 14791528 14791705 + 2 NA intron (NM_001351663, intron 5 of 17) intron (NM_001351663, intron 5 of 17) 137902 NR_037841 100379174 Hs.407533 NR_037841 ENSG00000235914 MACROD2-AS1 BA318C17.1|NCRNA00186 MACROD2 antisense RNA 1 ncRNA 437-61 chr13 64585704 64586091 + 2 NA Intergenic Intergenic -509886 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 202-182 chr4 30642824 30642956 + 2 NA Intergenic Intergenic -77479 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 374-357 chr7 40442043 40442390 + 2 NA intron (NM_024728, intron 9 of 14) LTR8B|LTR|ERV1 307240 NM_001193311 79783 Hs.586313 NM_024728 ENSG00000175600 SUGCT C7orf10|DERP13|GA3|ORF19 succinyl-CoA:glutarate-CoA transferase protein-coding 270-182 chr2 67432830 67433078 + 2 NA Intergenic L1M7|LINE|L1 35621 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 204-204 chr3 111371474 111371616 + 2 NA Intergenic L1M2|LINE|L1 -170652 NM_198196 10225 Hs.142023 NM_005816 ENSG00000153283 CD96 TACTILE CD96 molecule protein-coding 410-294 chr8 25407372 25407729 + 2 NA intron (NM_024940, intron 48 of 51) intron (NM_024940, intron 48 of 51) 16711 NM_001083111 2796 Hs.82963 NM_000825 ENSG00000147437 GNRH1 GNRH|GRH|LHRH|LNRH gonadotropin releasing hormone 1 protein-coding 520-213 chr4 58554778 58555268 + 2 NA Intergenic Intergenic -18695 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 184-103 chr2 187805293 187805471 + 2 NA Intergenic Intergenic -250877 NM_001318941 7035 Hs.516578 NM_006287 ENSG00000003436 TFPI EPI|LACI|TFI|TFPI1 tissue factor pathway inhibitor protein-coding 204-85 chr14 41739909 41740023 + 2 NA intron (NM_001346173, intron 1 of 4) L1MA7|LINE|L1 133110 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 244-122 chr16 65641118 65641324 + 2 NA Intergenic L1MEi|LINE|L1 -64921 NR_027755 283867 Hs.444774 NM_001101346 ENSG00000261742 LINC00922 - long intergenic non-protein coding RNA 922 ncRNA 381-201 chr2 114477759 114478093 + 2 NA intron (NM_001321908, intron 2 of 25) intron (NM_001321908, intron 2 of 25) 16349 NM_001321908 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 608-118 chr5 7836679 7837123 + 2 NA intron (NM_001089584, intron 1 of 2) LTR48B|LTR|ERV1 14232 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 518-51 chr11 37799543 37800059 + 2 NA Intergenic L1PA16|LINE|L1 -138800 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 632-104 chr6 67336508 67336954 + 2 NA Intergenic Intergenic -718620 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 122-13 chr12 127201591 127201672 + 2 NA Intergenic Intergenic 82652 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 248-315 chr5 75010596 75010837 + 2 NA Intergenic Intergenic 41842 NM_001366737 51301 Hs.272404 NM_016591 ENSG00000176928 GCNT4 C2GNT3|LINC01336 glucosaminyl (N-acetyl) transferase 4 protein-coding 532-59 chr12 133143427 133143800 + 2 NA intron (NM_015394, intron 1 of 4) L1MEc|LINE|L1 12986 NM_015394 7556 Hs.573983 NM_015394 ENSG00000256223 ZNF10 KOX1 zinc finger protein 10 protein-coding 579-28 chr12 107808869 107809317 + 2 NA Intergenic Intergenic 34708 NM_203436 121549 Hs.149910 NM_203436 ENSG00000187855 ASCL4 HASH4|bHLHa44 achaete-scute family bHLH transcription factor 4 protein-coding 452-44 chr11 76775234 76775557 + 2 NA Intergenic L1M4c|LINE|L1 -6918 NM_001258210 25987 Hs.8361 NM_015516 ENSG00000182704 TSKU E2IG4|LRRC54|TSK tsukushi, small leucine rich proteoglycan protein-coding 381-140 chr17 59074966 59075199 + 2 NA intron (NR_148346, intron 8 of 23) intron (NR_148346, intron 8 of 23) 31798 NM_001353086 4591 Hs.579079 NM_015294 ENSG00000108395 TRIM37 MUL|POB1|TEF3 tripartite motif containing 37 protein-coding 275-88 chr12 88914096 88914267 + 2 NA Intergenic L1MA4A|LINE|L1 105511 NR_038385 728084 Hs.132563 NR_038385 ENSG00000246363 LINC02458 - long intergenic non-protein coding RNA 2458 ncRNA 313-314 chr21 27166701 27166904 + 2 NA Intergenic Intergenic -199714 NM_007038 11096 Hs.58324 NM_007038 ENSG00000154736 ADAMTS5 ADAM-TS 11|ADAM-TS 5|ADAM-TS5|ADAMTS-11|ADAMTS-5|ADAMTS11|ADMP-2 ADAM metallopeptidase with thrombospondin type 1 motif 5 protein-coding 239-5 chr1 66088387 66088582 + 2 NA intron (NM_001037340, intron 1 of 14) L3|LINE|CR1 -37766 NR_123718 101927139 Hs.127908 NR_123718 ENSG00000227466 LOC101927139 - uncharacterized LOC101927139 ncRNA 310-454 chr6 101526092 101526255 + 2 NA intron (NM_001166247, intron 1 of 16) intron (NM_001166247, intron 1 of 16) 127188 NM_175768 2898 Hs.98262 NM_021956 ENSG00000164418 GRIK2 EAA4|GLR6|GLUK6|GLUR6|GluK2|MRT6 glutamate ionotropic receptor kainate type subunit 2 protein-coding 206-223 chr5 156446238 156446437 + 2 NA intron (NM_001128209, intron 2 of 7) intron (NM_001128209, intron 2 of 7) 119173 NM_172244 6444 Hs.387207 NM_000337 ENSG00000170624 SGCD 35DAG|CMD1L|DAGD|LGMDR6|SG-delta|SGCDP|SGD sarcoglycan delta protein-coding 575-39 chr12 30347179 30347615 + 2 NA Intergenic L1PA13|LINE|L1 329847 NM_001190995 10526 Hs.505136 NM_006390 ENSG00000133704 IPO8 RANBP8 importin 8 protein-coding 401-62 chr12 33478804 33479035 + 2 NA Intergenic L1M4|LINE|L1 -39100 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 640-2 chr1 59038110 59038680 + 2 NA intron (NR_110626, intron 2 of 2) L1MA9|LINE|L1 17919 NR_110626 101926925 NR_110626 LINC01358 - long intergenic non-protein coding RNA 1358 ncRNA 328-293 chr2 189536688 189536871 + 2 NA Intergenic MIRb|SINE|MIR 44032 NM_014585 30061 Hs.643005 NM_014585 ENSG00000138449 SLC40A1 FPN1|HFE4|IREG1|MST079|MSTP079|MTP1|SLC11A3 solute carrier family 40 member 1 protein-coding 230-112 chr14 51081186 51081350 + 2 NA intron (NM_015163, intron 1 of 9) L1MB7|LINE|L1 14436 NM_015163 114088 Hs.654750 NM_015163 ENSG00000100505 TRIM9 RNF91|SPRING tripartite motif containing 9 protein-coding 575-48 chr14 27928236 27928651 + 2 NA Intergenic Intergenic -255222 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 386-115 chr15 60305981 60306284 + 2 NA Intergenic HAL1|LINE|L1 91854 NM_001136015 302 Hs.511605 NM_004039 ENSG00000182718 ANXA2 ANX2|ANX2L4|CAL1H|HEL-S-270|LIP2|LPC2|LPC2D|P36|PAP-IV annexin A2 protein-coding 278-328 chr5 18105060 18105310 + 2 NA Intergenic Intergenic 297911 NR_134286 646241 Hs.407197 NR_134286 LINC02223 - long intergenic non-protein coding RNA 2223 ncRNA 218-104 chr15 61387992 61388115 + 2 NA Intergenic MLT1H|LTR|ERVL-MaLR -158751 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 199-195 chr5 22615801 22615920 + 2 NA intron (NM_004061, intron 1 of 14) intron (NM_004061, intron 1 of 14) 237484 NM_004061 1010 Hs.113684 NM_004061 ENSG00000154162 CDH12 CDHB cadherin 12 protein-coding 222-312 chr5 167050490 167050688 + 2 NA Intergenic Intergenic -22653 NM_001122679 57451 Hs.631957 NM_001080428 ENSG00000145934 TENM2 ODZ2|TEN-M2|TNM2|ten-2 teneurin transmembrane protein 2 protein-coding 242-51 chr11 23038698 23038870 + 2 NA Intergenic L1PA16|LINE|L1 -178310 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 514-104 chr15 94614130 94614629 + 2 NA Intergenic Intergenic -240984 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 666-118 chr9 22846770 22847174 + 2 NA Intergenic L1MA9|LINE|L1 200772 NR_038977 441389 NR_038977 ENSG00000234840 LINC01239 - long intergenic non-protein coding RNA 1239 ncRNA 314-455 chr5 27322828 27323121 + 2 NA Intergenic Intergenic -149318 NR_038848 643401 Hs.533212 NR_038848 ENSG00000250337 PURPL LINC01021 p53 upregulated regulator of p53 levels ncRNA 382-10 chr1 106356255 106356481 + 2 NA Intergenic L2a|LINE|L2 -328115 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 316-270 chr2 82352253 82352468 + 2 NA Intergenic Intergenic -504443 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 331-46 chr10 32951107 32951376 + 2 NA intron (NM_002211, intron 1 of 15) intron (NM_002211, intron 1 of 15) 6653 NM_133376 3688 Hs.643813 NM_002211 ENSG00000150093 ITGB1 CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB integrin subunit beta 1 protein-coding 128-47 chr5 16374843 16374959 + 2 NA intron (NR_104625, intron 8 of 8) intron (NR_104625, intron 8 of 8) 66201 NR_104625 101929505 Hs.639360 NR_104625 ENSG00000248150 LINC02150 - long intergenic non-protein coding RNA 2150 ncRNA 377-168 chr18 12823682 12824004 + 2 NA intron (NM_001207013, intron 5 of 10) MIRc|SINE|MIR 17119 NM_001308287 5771 Hs.654527 NM_002828 ENSG00000175354 PTPN2 PTN2|PTPT|TC-PTP|TCELLPTP|TCPTP protein tyrosine phosphatase non-receptor type 2 protein-coding 622-19 chr12 13695858 13696318 + 2 NA intron (NM_000834, intron 3 of 12) intron (NM_000834, intron 3 of 12) 284268 NM_000834 2904 Hs.504844 NM_000834 ENSG00000273079 GRIN2B EIEE27|GluN2B|MRD6|NMDAR2B|NR2B|NR3|hNR3 glutamate ionotropic receptor NMDA type subunit 2B protein-coding 406-137 chr2 36121437 36121795 + 2 NA Intergenic L1P3|LINE|L1 233954 NR_037631 100288911 Hs.432924 NR_037631 CRIM1-DT - CRIM1 divergent transcript ncRNA 276-157 chr14 87420204 87420450 + 2 NA Intergenic Intergenic 234967 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 188-72 chr16 68500743 68500864 + 2 NA Intergenic AluJo|SINE|Alu -38410 NM_001305204 146198 Hs.461074 NM_133458 ENSG00000184939 ZFP90 FIK|NK10|ZNF756|zfp-90 ZFP90 zinc finger protein protein-coding 508-154 chr3 127499086 127499547 + 2 NA intron (NR_125397, intron 6 of 6) intron (NR_125397, intron 6 of 6) 38464 NR_125397 101927149 Hs.407798 NR_125397 ENSG00000239921 LINC01471 - long intergenic non-protein coding RNA 1471 ncRNA 407-224 chr4 87306164 87306514 + 2 NA intron (NM_178135, intron 6 of 6) intron (NM_178135, intron 6 of 6) -5756 NR_049891 100847027 NR_049891 ENSG00000263981 MIR5705 - microRNA 5705 ncRNA 345-155 chr14 64871208 64871428 + 2 NA intron (NM_001355436, intron 1 of 35) intron (NM_001355436, intron 1 of 35) 8589 NM_001355437 6710 Hs.417303 NM_000347 ENSG00000070182 SPTB EL3|HS2|HSPTB1|SPH2 spectrin beta, erythrocytic protein-coding 418-211 chr5 31654900 31655128 + 2 NA intron (NM_178140, intron 1 of 24) L2a|LINE|L2 15883 NM_178140 23037 Hs.481819 NM_015022 ENSG00000133401 PDZD2 AIPC|PAPIN|PDZK3|PIN1 PDZ domain containing 2 protein-coding 250-326 chr4 166777896 166778057 + 2 NA intron (NM_001204356, intron 6 of 9) intron (NM_001204356, intron 6 of 9) 456450 NM_001204353 50859 Hs.481133 NM_016950 ENSG00000196104 SPOCK3 HSAJ1454|TES-3|TICN3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 protein-coding 457-250 chr8 49241532 49241852 + 2 NA Intergenic L1MB4|LINE|L1 169348 NM_001007176 492307 Hs.49890 NM_001007176 ENSG00000168333 PPDPFL C8orf22 pancreatic progenitor cell differentiation and proliferation factor like protein-coding 278-72 chr12 53139550 53139730 + 2 NA Intergenic MER77B|LTR|ERVL 24853 NM_001244706 51380 Hs.279815 NM_015989 ENSG00000139631 CSAD CSD|PCAP cysteine sulfinic acid decarboxylase protein-coding 237-8 chr1 73560048 73560240 + 2 NA Intergenic Intergenic -114535 NR_146300 109729166 Hs.563902 NR_146300 LINC02238 - long intergenic non-protein coding RNA 2238 ncRNA 367-81 chr11 101373218 101373522 + 2 NA Intergenic Intergenic 146535 NR_037485 100500823 NR_037485 ENSG00000263885 MIR3920 - microRNA 3920 ncRNA 207-3 chr1 40042837 40042980 + 2 NA intron (NM_001350484, intron 2 of 13) L2c|LINE|L2 2057 NM_001350481 10487 Hs.370581 NM_006367 ENSG00000131236 CAP1 CAP|CAP1-PEN cyclase associated actin cytoskeleton regulatory protein 1 protein-coding 220-234 chr3 94549108 94549272 + 2 NA Intergenic L1PA15|LINE|L1 -389073 NR_015400 255025 Hs.130994 NR_015400 ENSG00000239589 LINC00879 - long intergenic non-protein coding RNA 879 ncRNA 142-59 chr5 33158494 33158579 + 2 NA Intergenic Intergenic -71199 NR_147008 105374716 Hs.582475 NR_147008 ENSG00000251443 LINC02160 - long intergenic non-protein coding RNA 2160 ncRNA 450-91 chr14 100940325 100940682 + 2 NA promoter-TSS (NR_003235) promoter-TSS (NR_003235) -623 NR_003235 767567 NR_003235 ENSG00000200632 SNORD113-7 14q(I-7) small nucleolar RNA, C/D box 113-7 snoRNA 222-154 chr18 75696674 75696834 + 2 NA non-coding (NR_134646, exon 2 of 2) non-coding (NR_134646, exon 2 of 2) 15649 NR_134646 100505853 Hs.146758 NR_134646 ENSG00000261194 LINC01898 - long intergenic non-protein coding RNA 1898 ncRNA 471-64 chr12 27539721 27540033 + 2 NA intron (NM_003622, intron 1 of 29) intron (NM_003622, intron 1 of 29) 15671 NM_001198916 8496 Hs.172445 NM_003622 ENSG00000110841 PPFIBP1 L2|SGT2|hSGT2|hSgt2p PPFIA binding protein 1 protein-coding 158-58 chr2 148165139 148165232 + 2 NA intron (NM_018328, intron 2 of 14) Mam_R4|LINE|Dong-R4 -143581 NM_181742 5000 Hs.558364 NM_002552 ENSG00000115947 ORC4 ORC4L|ORC4P origin recognition complex subunit 4 protein-coding 261-272 chr4 31952434 31952654 + 2 NA Intergenic Intergenic -44835 NR_125936 102723828 Hs.575118 NR_125936 ENSG00000251129 LINC02506 - long intergenic non-protein coding RNA 2506 ncRNA 293-99 chr13 25509436 25509640 + 2 NA intron (NM_016529, intron 2 of 36) Arthur1|DNA|hAT-Tip100 40764 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 249-260 chr3 60816068 60816245 + 2 NA intron (NR_148921, intron 4 of 4) L1PA16|LINE|L1 -198286 NR_128708 103504735 NR_128708 ENSG00000281426 MIR548BB MI0029321|hsa-mir-548bb microRNA 548bb ncRNA 196-241 chr8 3646321 3646484 + 2 NA intron (NM_033225, intron 7 of 69) intron (NM_033225, intron 7 of 69) -917951 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 683-19 chr13 31816642 31817191 + 2 NA Intergenic L1MEd|LINE|L1 -29867 NR_027062 196549 Hs.507667 NM_145293 EEF1DP3 - eukaryotic translation elongation factor 1 delta pseudogene 3 pseudo 266-63 chr11 60689918 60690070 + 2 NA Intergenic MER20B|DNA|hAT-Charlie -9618 NM_031457 83661 Hs.150878 NM_031457 ENSG00000166959 MS4A8 4SPAN4|CD20L5|MS4A4|MS4A8B membrane spanning 4-domains A8 protein-coding 561-53 chr12 131125787 131126218 + 2 NA intron (NM_198827, intron 20 of 24) MER47A|DNA|TcMar-Tigger -39009 NR_026670 116437 Hs.675497 NR_026670 ENSG00000204603 LINC01257 - long intergenic non-protein coding RNA 1257 ncRNA 353-4 chr1 36599585 36599800 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -116378 NM_156039 1441 Hs.524517 NM_000760 ENSG00000119535 CSF3R CD114|GCSFR|SCN7 colony stimulating factor 3 receptor protein-coding 515-59 chr13 37244594 37245018 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -139142 NM_145203 122011 Hs.512897 NM_145203 ENSG00000180138 CSNK1A1L CK1 casein kinase 1 alpha 1 like protein-coding 260-92 chr12 9098010 9098189 + 2 NA intron (NM_000014, intron 15 of 35) intron (NM_000014, intron 15 of 35) 18130 NM_001347425 2 Hs.88556 NM_000014 ENSG00000175899 A2M A2MD|CPAMD5|FWP007|S863-7 alpha-2-macroglobulin protein-coding 185-85 chr18 75190886 75191022 + 2 NA Intergenic Intergenic 14559 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 284-187 chr2 14367932 14368200 + 2 NA intron (NR_103814, intron 1 of 3) intron (NR_103814, intron 1 of 3) 32892 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 325-346 chr3 55659682 55659948 + 2 NA promoter-TSS (NR_024615) promoter-TSS (NR_024615) -346 NR_024615 711 Hs.667161 NR_024615 ENSG00000281708 ERC2-IT1 C1orf1|C3orf51|Po42 ERC2 intronic transcript 1 ncRNA 206-123 chr2 117585307 117585474 + 2 NA Intergenic L1MA7|LINE|L1 -229301 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 320-155 chr14 63848296 63848507 + 2 NA Intergenic Intergenic -4564 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 293-456 chr8 127284145 127284325 + 2 NA intron (NR_117099, intron 1 of 3) intron (NR_117099, intron 1 of 3) 39598 NR_117099 103021164 Hs.571531 NR_117099 CASC21 CARLO2|CARLo-2|LINC01244 cancer susceptibility 21 ncRNA 468-114 chr17 53724806 53725161 + 2 NA Intergenic L1MA6|LINE|L1 -97944 NM_032559 84643 Hs.226805 NM_032559 ENSG00000141200 KIF2B - kinesin family member 2B protein-coding 196 chr1 4306118 4306235 + 2 NA Intergenic Intergenic -105875 NR_027088 284661 Hs.278112 NR_027088 ENSG00000235054 LINC01777 - long intergenic non-protein coding RNA 1777 ncRNA 367-114 chr13 79217629 79217977 + 2 NA Intergenic Intergenic 188418 NM_001286631 64062 Hs.558528 NM_018605 ENSG00000139746 RBM26 ARRS2|C13orf10|PPP1R132|PRO1777|SE70-2|ZC3H17 RNA binding motif protein 26 protein-coding 144-16 chr11 90319261 90319383 + 2 NA intron (NR_104190, intron 1 of 6) MER41B|LTR|ERV1 68090 NR_104190 101929222 Hs.616763 NR_104190 ENSG00000261645 DISC1FP1 Boymaw DISC1 fusion partner 1 ncRNA 238-92 chr13 55538415 55538604 + 2 NA Intergenic L1M4b|LINE|L1 364055 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 536-69 chr14 26014449 26014808 + 2 NA Intergenic L1MA3|LINE|L1 538802 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 318-304 chr2 205874614 205874773 + 2 NA Intergenic LTR12_|LTR|ERV1 192192 NM_201267 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 449-128 chr2 122458439 122458720 + 2 NA Intergenic L1MB7|LINE|L1 614902 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 461-112 chr18 69506001 69506387 + 2 NA intron (NM_152721, intron 1 of 7) intron (NM_152721, intron 1 of 7) 36263 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 314-416 chr4 44139739 44139945 + 2 NA Intergenic L2a|LINE|L2 122780 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 466-97 chr16 83452685 83453016 + 2 NA intron (NM_001220489, intron 5 of 12) intron (NM_001220489, intron 5 of 12) -55496 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 481-309 chr8 139068367 139068746 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -154515 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 517-166 chr21 30527245 30527712 + 2 NA Intergenic Intergenic 14386 NM_001303120 337973 Hs.553695 NM_181612 ENSG00000186925 KRTAP19-6 KAP19.6 keratin associated protein 19-6 protein-coding 339-519 chr7 8602006 8602277 + 2 NA intron (NM_152745, intron 2 of 2) intron (NM_152745, intron 2 of 2) 168532 NM_152745 30010 Hs.487564 NM_152745 ENSG00000122584 NXPH1 NPH1|Nbla00697 neurexophilin 1 protein-coding 517-220 chr5 97940326 97940771 + 2 NA Intergenic L1M4|LINE|L1 99790 NR_146299 109729164 NR_146299 LINC02234 - long intergenic non-protein coding RNA 2234 ncRNA 233-358 chr7 89920122 89920331 + 2 NA intron (NR_110029, intron 2 of 2) L1M8|LINE|L1 -199174 NR_003551 442523 Hs.406964 NR_003551 ENSG00000235436 DPY19L2P4 - DPY19L2 pseudogene 4 pseudo 294-399 chr5 172525198 172525368 + 2 NA Intergenic MER20|DNA|hAT-Charlie 33731 NR_146726 105377728 Hs.131465 NR_146726 LINC01944 CTB-54I1.1 long intergenic non-protein coding RNA 1944 ncRNA 301-3 chr1 69144264 69144514 + 2 NA intron (NR_146608, intron 3 of 4) intron (NR_146608, intron 3 of 4) 88491 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 680-24 chr11 76471668 76472092 + 2 NA intron (NM_001300942, intron 8 of 21) L2a|LINE|L2 26855 NM_020193 56946 Hs.352588 NM_020193 ENSG00000158636 EMSY C11orf30|GL002 EMSY transcriptional repressor, BRCA2 interacting protein-coding 198-115 chr2 14197041 14197185 + 2 NA Intergenic Intergenic 203845 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 394-50 chr10 98584625 98584916 + 2 NA intron (NM_021828, intron 9 of 11) MER110A|LTR|ERV1 -137807 NM_001322490 3257 Hs.404568 NM_000195 ENSG00000107521 HPS1 BLOC3S1|HPS HPS1 biogenesis of lysosomal organelles complex 3 subunit 1 protein-coding 265-312 chr5 82266877 82267102 + 2 NA Intergenic L1MD2|LINE|L1 11365 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 407-29 chr10 43759179 43759515 + 2 NA Intergenic Intergenic 19478 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 165-34 chr14 72168048 72168165 + 2 NA intron (NM_001370288, intron 2 of 16) intron (NM_001370288, intron 2 of 16) 234579 NM_001370277 9628 Hs.509872 NM_004296 ENSG00000182732 RGS6 GAP|HA117|S914 regulator of G protein signaling 6 protein-coding 165-123 chr7 54958705 54958812 + 2 NA Intergenic Intergenic -60259 NM_201282 1956 Hs.488293 NM_005228 ENSG00000146648 EGFR ERBB|ERBB1|HER1|NISBD2|PIG61|mENA epidermal growth factor receptor protein-coding 295-78 chr11 86202118 86202363 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -42144 NM_001308007 8726 Hs.503510 NM_003797 ENSG00000074266 EED COGIS|HEED|WAIT1 embryonic ectoderm development protein-coding 601-122 chr5 71729151 71729672 + 2 NA Intergenic AluJb|SINE|Alu 10136 NM_004291 9607 Hs.1707 NM_004291 ENSG00000164326 CARTPT CART CART prepropeptide protein-coding 213-134 chr2 41275861 41276000 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger -601625 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 364-88 chr11 41288647 41288852 + 2 NA intron (NM_001258419, intron 1 of 6) MLT1E1|LTR|ERVL-MaLR 170887 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 336-479 chr6 36190062 36190321 + 2 NA Intergenic HAL1|LINE|L1 -6553 NM_015695 27154 Hs.520096 NM_015695 ENSG00000096070 BRPF3 - bromodomain and PHD finger containing 3 protein-coding 220-134 chr17 61872837 61873014 + 2 NA intron (NM_001351695, intron 19 of 24) L1ME4a|LINE|L1 -9366 NM_032043 83990 Hs.128903 NM_032043 ENSG00000136492 BRIP1 BACH1|FANCJ|OF BRCA1 interacting protein C-terminal helicase 1 protein-coding 330-30 chr1 166587551 166587735 + 2 NA Intergenic Intergenic -16273 NR_002925 116123 Hs.348539 NM_138784 ENSG00000215834 FMO9P - flavin containing dimethylaniline monoxygenase 9, pseudogene pseudo 189-95 chr2 137781061 137781221 + 2 NA Intergenic HERV35I-int|LTR|ERV1 146791 NR_120402 101928273 Hs.560928 NR_120402 LOC101928273 - uncharacterized LOC101928273 ncRNA 367-112 chr13 73018524 73018800 + 2 NA Intergenic Intergenic -36314 NM_001286818 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 418-259 chr7 39483982 39484371 + 2 NA Intergenic MIRb|SINE|MIR -77830 NR_046711 100861520 Hs.571292 NR_046711 ENSG00000224122 POU6F2-AS1 - POU6F2 antisense RNA 1 ncRNA 541-77 chr16 48428496 48428892 + 2 NA Intergenic MER50|LTR|ERV1 -43281 NM_003031 6477 Hs.706828 NM_003031 ENSG00000196470 SIAH1 SIAH1A siah E3 ubiquitin protein ligase 1 protein-coding 256-152 chr16 48681738 48681928 + 2 NA Intergenic Intergenic -71653 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 523-143 chr2 182785899 182786311 + 2 NA non-coding (NR_073365, exon 24 of 24) non-coding (NR_073365, exon 24 of 24) 69848 NM_001271581 54431 Hs.516632 NM_018981 ENSG00000077232 DNAJC10 ERdj5|JPDI|MTHr|PDIA19 DnaJ heat shock protein family (Hsp40) member C10 protein-coding 123-49 chr5 166890624 166890705 + 2 NA Intergenic MIRc|SINE|MIR 35706 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 319-32 chr1 181284102 181284309 + 2 NA Intergenic AluJr4|SINE|Alu 47817 NR_046249 100287948 Hs.742594 NR_046249 ENSG00000179452 LINC01699 GM140 long intergenic non-protein coding RNA 1699 ncRNA 161-78 chr4 129703605 129703727 + 2 NA Intergenic Intergenic 67812 NR_110753 101927282 Hs.407480 NR_110753 ENSG00000246876 LINC02466 - long intergenic non-protein coding RNA 2466 ncRNA 254-169 chr18 65161082 65161258 + 2 NA Intergenic Intergenic -589082 NM_033646 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 298-241 chr2 181901921 181902184 + 2 NA exon (NM_001130445, exon 8 of 18) exon (NM_001130445, exon 8 of 18) 10322 NR_109843 6744 Hs.196983 NM_006751 ENSG00000138434 ITPRID2 CS-1|CS1|KRAP|SPAG13|SSFA2 ITPR interacting domain containing 2 protein-coding 501-282 chr9 126007970 126008320 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 259962 NM_001134778 5090 Hs.428027 NM_006195 ENSG00000167081 PBX3 - PBX homeobox 3 protein-coding 333-598 chr9 26418606 26418812 + 2 NA Intergenic MIR1_Amn|SINE|MIR 352034 NM_001004352 100506422 Hs.533221 NM_001004352 LOC100506422 - putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 protein-coding 372-313 chr3 6167867 6168180 + 2 NA Intergenic Intergenic 637426 NR_110123 101927347 Hs.333345 NR_110123 ENSG00000226258 GRM7-AS3 - GRM7 antisense RNA 3 ncRNA 321-75 chr10 94080165 94080457 + 2 NA intron (NM_001288989, intron 2 of 32) L2a|LINE|L2 -8715 NM_001165979 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 181-89 chr22 34703947 34704103 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 293891 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 323-457 chr6 52478383 52478700 + 2 NA intron (NR_033327, intron 6 of 9) intron (NR_033327, intron 6 of 9) 57533 NM_001172420 114327 Hs.403171 NM_018100 ENSG00000096093 EFHC1 EJM1|dJ304B14.2 EF-hand domain containing 1 protein-coding 257-155 chr18 23389265 23389457 + 2 NA intron (NR_148385, intron 3 of 13) L4_B_Mam|LINE|RTE-X 48600 NM_032933 85019 Hs.137562 NM_032933 ENSG00000134490 TMEM241 C18orf45|hVVT transmembrane protein 241 protein-coding 291-113 chr13 69001809 69002007 + 2 NA Intergenic L1PA13|LINE|L1 -116583 NR_038878 338862 NR_038878 ENSG00000281778 LINC00550 - long intergenic non-protein coding RNA 550 ncRNA 314-12 chr1 67842981 67843181 + 2 NA intron (NR_040077, intron 1 of 9) HAL1|LINE|L1 -9614 NM_018841 55970 Hs.431101 NM_018841 ENSG00000172380 GNG12 - G protein subunit gamma 12 protein-coding 334-66 chr10 81975544 81975773 + 2 NA intron (NR_163253, intron 2 of 10) intron (NR_163253, intron 2 of 10) 97971 NR_163253 10718 Hs.125119 NM_001010848 ENSG00000185737 NRG3 HRG3|pro-NRG3 neuregulin 3 protein-coding 421-306 chr8 113537501 113537856 + 2 NA Intergenic L1PA13|LINE|L1 -100739 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 508-104 chr2 83419428 83419809 + 2 NA Intergenic L1PB4|LINE|L1 -103196 NR_146482 101928031 Hs.547548 NR_146482 ENSG00000232548 LINC01809 - long intergenic non-protein coding RNA 1809 ncRNA 395-209 chr21 45943154 45943483 + 2 NA TTS (NM_001130141) TTS (NM_001130141) -29652 NR_109931 101928796 Hs.130919 NR_109931 LOC101928796 - uncharacterized LOC101928796 ncRNA 524-63 chr14 56809930 56810341 + 2 NA intron (NR_073034, intron 2 of 3) intron (NR_073034, intron 2 of 3) 344 NM_001270524 5015 Hs.288655 NM_021728 ENSG00000165588 OTX2 CPHD6|MCOPS5 orthodenticle homeobox 2 protein-coding 371-225 chr20 60387400 60387629 + 2 NA Intergenic L1MA5A|LINE|L1 79040 NR_030376 693231 NR_030376 ENSG00000207802 MIR646 MIRN646|hsa-mir-646 microRNA 646 ncRNA 240-123 chr13 85279577 85279736 + 2 NA Intergenic L1M3|LINE|L1 -83947 NR_046989 100874137 Hs.742643 NR_046989 ENSG00000226317 LINC00351 - long intergenic non-protein coding RNA 351 ncRNA 771-73 chr5 152398359 152398911 + 2 NA intron (NM_020167, intron 1 of 3) MER103C|DNA|hAT-Charlie 6644 NM_020167 56923 Hs.731911 NM_020167 ENSG00000132911 NMUR2 FM-4|FM4|NMU-R2|NMU2R|TGR-1|TGR1 neuromedin U receptor 2 protein-coding 666-38 chr17 61149864 61150390 + 2 NA intron (NM_001330413, intron 23 of 25) intron (NM_001330413, intron 23 of 25) 217577 NR_136397 101927855 Hs.662123 NR_136397 ENSG00000267131 LOC101927855 - uncharacterized LOC101927855 ncRNA 543-236 chr7 109062484 109062942 + 2 NA Intergenic Intergenic -178126 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 318-379 chr3 192013992 192014253 + 2 NA Intergenic Intergenic -224508 NR_046596 100873986 Hs.581652 NR_046596 ENSG00000231383 FGF12-AS1 - FGF12 antisense RNA 1 ncRNA 128-85 chr9 34208157 34208255 + 2 NA intron (NM_001171203, intron 2 of 7) L1MD|LINE|L1 29163 NM_001171203 51271 Hs.268963 NM_016525 ENSG00000165006 UBAP1 NAG20|SPG80|UAP|UBAP|UBAP-1 ubiquitin associated protein 1 protein-coding 300-494 chr9 137965499 137965768 + 2 NA intron (NM_001243812, intron 10 of 45) AluSx1|SINE|Alu -18573 NR_132978 105376331 NR_132977 LOC105376331 - uncharacterized LOC105376331 ncRNA 286-173 chr18 40262374 40262587 + 2 NA Intergenic MSTB-int|LTR|ERVL-MaLR 196194 NR_110791 101927900 Hs.385522 NR_110791 ENSG00000261715 LINC01477 - long intergenic non-protein coding RNA 1477 ncRNA 322-536 chr8 100766185 100766421 + 2 NA Intergenic L1MD3|LINE|L1 -44215 NM_002568 26986 Hs.387804 NM_002568 ENSG00000070756 PABPC1 PAB1|PABP|PABP1|PABPC2|PABPL1 poly(A) binding protein cytoplasmic 1 protein-coding 317-95 chr11 126937117 126937384 + 2 NA intron (NM_001301097, intron 1 of 15) intron (NM_001301097, intron 1 of 15) -3496 NR_046986 100874251 Hs.319053 NR_046986 ENSG00000254960 KIRREL3-AS2 - KIRREL3 antisense RNA 2 ncRNA 302-315 chr4 37160542 37160818 + 2 NA Intergenic Intergenic 81311 NR_039965 100616435 NR_039965 ENSG00000264319 MIR4801 - microRNA 4801 ncRNA 323-159 chr15 23955185 23955365 + 2 NA Intergenic Intergenic -19872 NR_126392 105370731 Hs.532639 NR_126392 PWRN4 LINC01084 Prader-Willi region non-protein coding RNA 4 ncRNA 495-39 chr12 2756827 2757301 + 2 NA intron (NR_146317, intron 3 of 3) MSTA|LTR|ERVL-MaLR -37906 NM_002014 2288 Hs.524183 NM_002014 ENSG00000004478 FKBP4 FKBP51|FKBP52|FKBP59|HBI|Hsp56|PPIase|p52 FKBP prolyl isomerase 4 protein-coding 227-242 chr4 31716385 31716556 + 2 NA Intergenic L1M5|LINE|L1 209926 NR_149121 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 371-101 chr14 27646114 27646442 + 2 NA intron (NR_148991, intron 2 of 2) intron (NR_148991, intron 2 of 2) -13000 NR_130461 100422830 NR_130461 ENSG00000264657 MIR3171 - microRNA 3171 ncRNA 253-409 chr8 114132028 114132241 + 2 NA Intergenic L1MA4A|LINE|L1 -695195 NM_052900 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 252-265 chr3 74479964 74480198 + 2 NA intron (NM_020872, intron 3 of 21) HAL1|LINE|L1 41059 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 272-335 chr5 26888354 26888588 + 2 NA intron (NM_016279, intron 9 of 11) L1MC4a|LINE|L1 150115 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 564-143 chr4 68146899 68147270 + 2 NA Intergenic L1PA10|LINE|L1 -17215 NM_207407 389208 Hs.677557 NM_207407 ENSG00000198092 TMPRSS11F - transmembrane serine protease 11F protein-coding 118-11 chr11 84462297 84462377 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -144998 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 935-9 chr11 54776689 54777324 + 2 NA Intergenic ALR/Alpha|Satellite|centr 70174 NM_001005272 81318 Hs.554531 NM_001005272 ENSG00000221840 OR4A5 OR11-111 olfactory receptor family 4 subfamily A member 5 protein-coding 846-39 chr5 42953405 42953976 + 2 NA Intergenic Intergenic 39643 NR_104643 643977 Hs.535791 NR_104643 FLJ32255 - uncharacterized LOC643977 ncRNA 254-31 chr1 248608313 248608513 + 2 NA Intergenic Intergenic -14645 NM_001004693 127069 Hs.553585 NM_001004693 ENSG00000184022 OR2T10 OR1-64 olfactory receptor family 2 subfamily T member 10 protein-coding 531-131 chr2 229370722 229371103 + 2 NA intron (NM_139072, intron 11 of 12) intron (NM_139072, intron 11 of 12) -99625 NM_001330157 55022 Hs.745038 NM_017933 ENSG00000153823 PID1 HMFN2073|NYGGF4|P-CLI1|PCLI1 phosphotyrosine interaction domain containing 1 protein-coding 388-210 chr22 34147270 34147466 + 2 NA Intergenic L1M8|LINE|L1 -224480 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 722-22 chr12 17813933 17814405 + 2 NA Intergenic L1M3c|LINE|L1 140870 NR_039770 100616279 NR_039770 ENSG00000283665 MIR3974 - microRNA 3974 ncRNA 202-137 chr2 235766027 235766149 + 2 NA intron (NM_001037131, intron 6 of 17) intron (NM_001037131, intron 6 of 17) -248167 NR_146582 27321 NR_146582 TNRC17 CAGL234 trinucleotide repeat containing 17 ncRNA 375-134 chr14 85421535 85421875 + 2 NA Intergenic LTR16C|LTR|ERVL 27790 NR_102738 100996280 Hs.135735 NR_102737 ENSG00000259107 LINC00911 - long intergenic non-protein coding RNA 911 ncRNA 200-166 chr3 1680891 1681089 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR -417813 NM_001350095 152330 Hs.298705 NM_175607 ENSG00000144619 CNTN4 AXCAM|BIG-2 contactin 4 protein-coding 659-97 chr6 147672404 147672849 + 2 NA Intergenic HAL1|LINE|L1 163936 NM_001030060 389432 Hs.567973 NM_001030060 ENSG00000203727 SAMD5 dJ875H10.1 sterile alpha motif domain containing 5 protein-coding 605-63 chr20 20948592 20949047 + 2 NA Intergenic Intergenic 157539 NR_147212 105372556 Hs.371339 NR_147212 ENSG00000225127 LINC00237 NCRNA00237 long intergenic non-protein coding RNA 237 ncRNA 530-23 chr10 12596887 12597244 + 2 NA intron (NM_001351032, intron 4 of 11) L2c|LINE|L2 18312 NR_039700 100616151 NR_039700 ENSG00000263584 MIR4480 - microRNA 4480 ncRNA 398-332 chr7 104657067 104657396 + 2 NA intron (NM_199000, intron 1 of 2) intron (NM_199000, intron 1 of 2) 146861 NR_034141 645591 Hs.658835 NR_034141 ENSG00000226869 LHFPL3-AS1 - LHFPL3 antisense RNA 1 ncRNA 180-164 chr8 35960590 35960750 + 2 NA Intergenic L2a|LINE|L2 -250350 NR_125819 101929550 Hs.583803 NR_125819 LOC101929550 - uncharacterized LOC101929550 ncRNA 366-369 chr6 36153910 36154107 + 2 NA Intergenic MIRb|SINE|MIR 23495 NM_002754 5603 Hs.178695 NM_002754 ENSG00000156711 MAPK13 MAPK 13|MAPK-13|PRKM13|SAPK4|p38delta mitogen-activated protein kinase 13 protein-coding 574-46 chr15 89223317 89223730 + 2 NA Intergenic (TTTAA)n|Simple_repeat|Simple_repeat -1944 NM_000326 6017 Hs.1933 NM_000326 ENSG00000140522 RLBP1 CRALBP retinaldehyde binding protein 1 protein-coding 307-310 chr3 114164471 114164739 + 2 NA intron (NM_000796, intron 2 of 6) intron (NM_000796, intron 2 of 6) 14171 NM_001290809 1814 Hs.121478 NM_000796 ENSG00000151577 DRD3 D3DR|ETM1|FET1 dopamine receptor D3 protein-coding 209-88 chr14 43617803 43617959 + 2 NA Intergenic Intergenic 889402 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 255-329 chr5 60063464 60063671 + 2 NA intron (NM_001349243, intron 2 of 16) intron (NM_001349243, intron 2 of 16) -169841 NM_001104631 5144 Hs.117545 NM_006203 ENSG00000113448 PDE4D ACRDYS2|DPDE3|HSPDE4D|PDE43|PDE4DN2|STRK1 phosphodiesterase 4D protein-coding 329-513 chr6 156569126 156569338 + 2 NA Intergenic Intergenic 190482 NR_145751 109617011 NR_145751 ENSG00000212295 SNORD28B - small nucleolar RNA, C/D box 28B snoRNA 269-142 chr16 6838753 6838922 + 2 NA intron (NM_001142334, intron 1 of 13) intron (NM_001142334, intron 1 of 13) 65028 NM_001142334 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 193-188 chr7 54551258 54551406 + 2 NA 3' UTR (NM_001317843, exon 4 of 4) 3' UTR (NM_001317843, exon 4 of 4) 5168 NR_133927 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 801-3 chr10 123802970 123803616 + 2 NA intron (NM_198148, intron 4 of 13) AluJb|SINE|Alu 88514 NM_198148 119587 Hs.656887 NM_198148 ENSG00000121898 CPXM2 CPX2|UNQ676 carboxypeptidase X, M14 family member 2 protein-coding 497-249 chr6 92504790 92505227 + 2 NA Intergenic L1MEc|LINE|L1 -814580 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 177-94 chr20 55709649 55709804 + 2 NA Intergenic THE1A|LTR|ERVL-MaLR -282529 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 192-94 chr2 14239934 14240089 + 2 NA intron (NR_103814, intron 2 of 3) L1ME2|LINE|L1 160947 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 445-160 chr21 31077209 31077550 + 2 NA Intergenic Intergenic -38903 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 413-292 chr8 30244658 30244916 + 2 NA Intergenic L1M4|LINE|L1 88418 NM_006571 10671 Hs.158427 NM_006571 ENSG00000104671 DCTN6 WS-3|WS3|p27 dynactin subunit 6 protein-coding 292-12 chr1 85724629 85724809 + 2 NA Intergenic L1MEg|LINE|L1 -16286 NM_017953 54680 Hs.5111 NM_017953 ENSG00000117174 ZNHIT6 BCD1|C1orf181|NY-BR-75 zinc finger HIT-type containing 6 protein-coding 523-121 chr19 57458728 57459074 + 2 NA Intergenic (TTTTT)n|Simple_repeat|Simple_repeat -2162 NM_020633 57191 Hs.677423 NM_020633 ENSG00000178201 VN1R1 V1RL1|VNR19I1|ZVNH1|ZVNR1 vomeronasal 1 receptor 1 protein-coding 338-427 chr5 40522922 40523229 + 2 NA Intergenic L1MC3|LINE|L1 -156840 NM_000958 5734 Hs.199248 NM_000958 ENSG00000171522 PTGER4 EP4|EP4R prostaglandin E receptor 4 protein-coding 319-466 chr6 98736659 98736927 + 2 NA Intergenic Intergenic 94907 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 461-111 chr18 12108226 12108596 + 2 NA intron (NM_001277333, intron 8 of 13) THE1D|LTR|ERVL-MaLR 14568 NM_001277333 342850 Hs.448906 NM_001277333 ENSG00000181626 ANKRD62 DKFZp779B1634 ankyrin repeat domain 62 protein-coding 202-129 chr2 128466047 128466229 + 2 NA Intergenic LTR8A|LTR|ERV1 -147270 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 314-250 chr19 9759590 9759776 + 2 NA intron (NM_001353798, intron 4 of 4) intron (NM_001353798, intron 4 of 4) 9055 NM_001353799 162993 Hs.665717 NM_001077624 ENSG00000196605 ZNF846 - zinc finger protein 846 protein-coding 368-366 chr5 90173776 90174068 + 2 NA intron (NR_120601, intron 4 of 5) intron (NR_120601, intron 4 of 5) 116149 NR_120601 101929495 Hs.346679 NR_120601 LINC01339 - long intergenic non-protein coding RNA 1339 ncRNA 264-154 chr16 52426893 52427125 + 2 NA Intergenic Intergenic 120134 NM_001080430 27324 Hs.132574 NM_001080430 ENSG00000103460 TOX3 CAGF9|TNRC9 TOX high mobility group box family member 3 protein-coding 781-3 chr1 113166355 113166959 + 2 NA Intergenic Intergenic 39596 NR_038846 643441 Hs.124895 NR_038846 LOC643441 - uncharacterized LOC643441 ncRNA 325-235 chr18 2433057 2433303 + 2 NA Intergenic Intergenic 138325 NM_022840 64863 Hs.126888 NM_022840 ENSG00000101574 METTL4 HsT661 methyltransferase like 4 protein-coding 312-42 chr10 54181101 54181371 + 2 NA intron (NM_001354411, intron 14 of 34) intron (NM_001354411, intron 14 of 34) -304994 NR_134503 105378311 Hs.623892 NR_134503 ENSG00000234173 LOC105378311 - uncharacterized LOC105378311 ncRNA 566-145 chr4 96463454 96463976 + 2 NA intron (NR_147149, intron 2 of 3) intron (NR_147149, intron 2 of 3) 153012 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 324-339 chr3 18484856 18485118 + 2 NA intron (NR_125803, intron 4 of 6) HAL1ME|LINE|L1 -39395 NM_001322874 6304 Hs.517717 NM_002971 ENSG00000182568 SATB1 - SATB homeobox 1 protein-coding 387-147 chr18 7571357 7571645 + 2 NA intron (NM_002845, intron 1 of 30) intron (NM_002845, intron 1 of 30) 4185 NM_002845 5797 Hs.49774 NM_002845 ENSG00000173482 PTPRM PTPRL1|R-PTP-MU|RPTPM|RPTPU|hR-PTPu protein tyrosine phosphatase receptor type M protein-coding 854-12 chr12 127285921 127286673 + 2 NA Intergenic Intergenic -2014 NR_146537 105370065 NR_146537 LINC02376 - long intergenic non-protein coding RNA 2376 ncRNA 251-339 chr6 69228754 69228901 + 2 NA intron (NM_001704, intron 17 of 31) MIR3|SINE|MIR 567639 NM_001363722 55788 Hs.271643 NM_018368 ENSG00000168216 LMBRD1 C6orf209|LMBD1|MAHCF|NESI LMBR1 domain containing 1 protein-coding 252-73 chr11 83353085 83353251 + 2 NA Intergenic Intergenic -66761 NM_001286117 60492 Hs.368866 NM_021825 ENSG00000137500 CCDC90B MDS011|MDS025 coiled-coil domain containing 90B protein-coding 455-189 chr4 94782613 94782904 + 2 NA intron (NM_001203, intron 1 of 12) L1MB7|LINE|L1 24803 NM_001203 658 Hs.598475 NM_001203 ENSG00000138696 BMPR1B ALK-6|ALK6|AMDD|BDA1D|BDA2|CDw293 bone morphogenetic protein receptor type 1B protein-coding 208-160 chr3 12531547 12531709 + 2 NA exon (NM_001321279, exon 10 of 11) exon (NM_001321279, exon 10 of 11) 13836 NM_001195279 100129480 Hs.572974 NM_001195279 ENSG00000225526 MKRN2OS C3orf83|MKRN2-AS1 MKRN2 opposite strand protein-coding 398-3 chr1 43498828 43499094 + 2 NA Intergenic AluJo|SINE|Alu -27076 NM_001329138 5792 Hs.272062 NM_002840 ENSG00000142949 PTPRF BNAH2|LAR protein tyrosine phosphatase receptor type F protein-coding 542-145 chr4 32398114 32398626 + 2 NA Intergenic Intergenic 47332 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 294-214 chr2 70105608 70105779 + 2 NA Intergenic AluSx1|SINE|Alu 18216 NM_006196 5093 Hs.2853 NM_006196 ENSG00000169564 PCBP1 HEL-S-85|HNRPE1|HNRPX|hnRNP-E1|hnRNP-X poly(rC) binding protein 1 protein-coding 482-43 chr10 115104699 115105024 + 2 NA intron (NR_074088, intron 2 of 9) L1MA3|LINE|L1 11496 NM_001276282 26033 Hs.501127 NM_207303 ENSG00000107518 ATRNL1 ALP|bA338L11.1|bA454H24.1 attractin like 1 protein-coding 419-312 chr9 115125087 115125433 + 2 NA intron (NR_110950, intron 4 of 5) MIRb|SINE|MIR -7103 NM_002160 3371 Hs.143250 NM_002160 ENSG00000041982 TNC 150-225|DFNA56|GMEM|GP|HXB|JI|TN|TN-C tenascin C protein-coding 502-98 chr15 61910022 61910372 + 2 NA exon (NM_017684, exon 62 of 83) exon (NM_017684, exon 62 of 83) 150250 NM_017684 54832 Hs.511668 NM_017684 ENSG00000129003 VPS13C PARK23 vacuolar protein sorting 13 homolog C protein-coding 337-151 chr14 52885463 52885734 + 2 NA intron (NM_006832, intron 4 of 14) intron (NM_006832, intron 4 of 14) 65452 NM_006832 10979 Hs.509343 NM_006832 ENSG00000073712 FERMT2 KIND2|MIG2|PLEKHC1|UNC112|UNC112B|mig-2 fermitin family member 2 protein-coding 331-164 chr14 78760816 78761049 + 2 NA intron (NR_073547, intron 8 of 20) intron (NR_073547, intron 8 of 20) 357213 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 392-310 chr7 62650034 62650258 + 2 NA Intergenic ALR/Alpha|Satellite|centr 653910 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 335-164 chr14 82700686 82700900 + 2 NA intron (NR_146650, intron 5 of 5) L1PA13|LINE|L1 58161 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 267-209 chr2 145436646 145436809 + 2 NA Intergenic Intergenic 768760 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 508-2 chr1 5260414 5260920 + 2 NA Intergenic L1MCc|LINE|L1 602074 NR_039838 100616421 NR_039838 ENSG00000264101 MIR4689 mir-4689 microRNA 4689 ncRNA 293-122 chr14 80509723 80509905 + 2 NA intron (NM_152446, intron 23 of 24) L1M1|LINE|L1 -278757 NM_000793 1734 Hs.202354 NM_000793 ENSG00000211448 DIO2 5DII|D2|DIOII|SelY|TXDI2 iodothyronine deiodinase 2 protein-coding 199-176 chr4 30794488 30794636 + 2 NA intron (NM_032457, intron 1 of 2) intron (NM_032457, intron 1 of 2) 74193 NM_001173523 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 258-85 chr12 39521428 39521592 + 2 NA Intergenic Intergenic -78390 NM_001173465 55605 Hs.374201 NM_017641 ENSG00000139116 KIF21A CFEOM1|FEOM1|FEOM3A kinesin family member 21A protein-coding 696-39 chr14 86162666 86163030 + 2 NA Intergenic Intergenic 228170 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 489-72 chr14 48360803 48361186 + 2 NA Intergenic Intergenic -565980 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 232-302 chr5 55809547 55809732 + 2 NA intron (NM_024415, intron 18 of 21) intron (NM_024415, intron 18 of 21) -41718 NM_001242637 133396 Hs.55378 NM_139017 ENSG00000164509 IL31RA CRL|CRL3|GLM-R|GLMR|GPL|IL-31RA|PLCA2|PRO21384|hGLM-R interleukin 31 receptor A protein-coding 236-160 chr2 15897996 15898162 + 2 NA Intergenic L1MEc|LINE|L1 -22320 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 493-69 chr13 46911918 46912330 + 2 NA Intergenic L1ME3A|LINE|L1 -15048 NM_001165947 3356 Hs.72630 NM_000621 ENSG00000102468 HTR2A 5-HT2A|HTR2 5-hydroxytryptamine receptor 2A protein-coding 509-162 chr3 187261044 187261386 + 2 NA intron (NR_033519, intron 2 of 9) MIR|SINE|MIR -30057 NR_135551 101929130 NR_135551 ENSG00000283175 LOC101929130 - uncharacterized LOC101929130 ncRNA 189-177 chr6 56621740 56621877 + 2 NA intron (NM_001723, intron 22 of 23) intron (NM_001723, intron 22 of 23) 21081 NM_015548 667 Hs.604915 NM_001723 ENSG00000151914 DST BP240|BPA|BPAG1|CATX-15|CATX15|D6S1101|DMH|DT|EBSB2|HSAN6|MACF2 dystonin protein-coding 142-39 chr2 82765745 82765857 + 2 NA Intergenic L1M2|LINE|L1 -91002 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 262-440 chr8 126657904 126658116 + 2 NA Intergenic Intergenic -99532 NM_174911 157638 Hs.124951 NM_174911 ENSG00000168672 LRATD2 BCMP101|FAM84B|NSE2 LRAT domain containing 2 protein-coding 377-394 chr8 65306277 65306502 + 2 NA Intergenic AluJr|SINE|Alu -126049 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 324-362 chr3 121048760 121048926 + 2 NA promoter-TSS (NR_049861) promoter-TSS (NR_049861) -797 NR_049861 100847043 NR_049861 ENSG00000264477 MIR5682 - microRNA 5682 ncRNA 312-514 chr8 66250847 66251126 + 2 NA Intergenic L1M6|LINE|L1 58872 NR_039979 100505659 Hs.529729 NR_039979 ENSG00000253138 LINC00967 - long intergenic non-protein coding RNA 967 ncRNA 514-252 chr6 117360233 117360714 + 2 NA intron (NM_002944, intron 21 of 42) intron (NM_002944, intron 21 of 42) 65382 NM_002944 6098 Hs.1041 NM_002944 ENSG00000047936 ROS1 MCF3|ROS|c-ros-1 ROS proto-oncogene 1, receptor tyrosine kinase protein-coding 229-305 chr5 74298464 74298654 + 2 NA Intergenic Intergenic 9766 NR_105009 102503429 Hs.519391 NR_105009 ENSG00000248942 LINC01335 - long intergenic non-protein coding RNA 1335 ncRNA 164-118 chr9 75679963 75680085 + 2 NA Intergenic L1MC1|LINE|L1 -210620 NM_001190482 5125 Hs.368542 NM_006200 ENSG00000099139 PCSK5 PC5|PC6|PC6A|SPC6 proprotein convertase subtilisin/kexin type 5 protein-coding 217-218 chr3 27604352 27604494 + 2 NA Intergenic Intergenic 117900 NM_001278182 8320 Hs.591663 NM_005442 ENSG00000163508 EOMES TBR2 eomesodermin protein-coding 505-245 chr5 87575320 87575689 + 2 NA Intergenic Arthur1B|DNA|hAT-Tip100 -86538 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 410-133 chr2 47972081 47972458 + 2 NA Intergenic L1PB|LINE|L1 -66476 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 506-125 chr2 18447496 18447885 + 2 NA Intergenic L1PA16|LINE|L1 112963 NM_020905 57665 Hs.120319 NM_020905 ENSG00000240857 RDH14 PAN2|SDR7C4 retinol dehydrogenase 14 protein-coding 131-71 chr7 72411326 72411443 + 2 NA intron (NM_031468, intron 1 of 6) L1MC5a|LINE|L1 954 NM_031468 83698 Hs.592750 NM_031468 ENSG00000183166 CALN1 CABP8 calneuron 1 protein-coding 196-99 chr17 71918832 71918970 + 2 NA Intergenic Intergenic 107078 NR_110876 102723505 Hs.547482 NR_110876 ROCR LINC02095 regulator of chondrogenesis RNA ncRNA 347-72 chr11 41047122 41047400 + 2 NA intron (NM_001258419, intron 1 of 6) L1MB7|LINE|L1 412375 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 535-261 chrX 42656628 42657137 + 2 NA Intergenic L1PB|LINE|L1 121281 NM_025210 80316 Hs.127689 NM_025210 ENSG00000102055 PPP1R2C I-4|PPP1R2P9 PPP1R2C family member C protein-coding 252-333 chr5 58652480 58652661 + 2 NA intron (NM_138453, intron 2 of 4) intron (NM_138453, intron 2 of 4) 69495 NM_138453 115827 Hs.4290 NM_138453 ENSG00000152932 RAB3C - RAB3C, member RAS oncogene family protein-coding 189-227 chr9 85052251 85052360 + 2 NA Intergenic Intergenic 346404 NM_001369552 4915 Hs.494312 NM_006180 ENSG00000148053 NTRK2 EIEE58|GP145-TrkB|OBHD|TRKB|trk-B neurotrophic receptor tyrosine kinase 2 protein-coding 237-318 chr6 4178298 4178476 + 2 NA Intergenic MER101-int|LTR|ERV1 11642 NR_125874 102724096 Hs.571140 NR_125874 LOC102724096 - uncharacterized LOC102724096 ncRNA 337-337 chr3 13193434 13193706 + 2 NA Intergenic Intergenic -120141 NM_001134382 9922 Hs.475506 NM_014869 ENSG00000144711 IQSEC1 ARF-GEP100|ARFGEP100|BRAG2|GEP100 IQ motif and Sec7 domain 1 protein-coding 214-185 chr20 9555643 9555756 + 2 NA intron (NM_020341, intron 8 of 10) MLT1H|LTR|ERVL-MaLR -40701 NR_109957 101929329 Hs.589878 NR_109957 ENSG00000225988 LAMP5-AS1 - LAMP5 antisense RNA 1 ncRNA 337-292 chr2 205916863 205917109 + 2 NA Intergenic L1MC1|LINE|L1 169188 NM_017759 54891 Hs.445036 NM_017759 ENSG00000114933 INO80D - INO80 complex subunit D protein-coding 344-160 chr15 86813384 86813662 + 2 NA intron (NM_152336, intron 23 of 24) intron (NM_152336, intron 23 of 24) -119357 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 293-359 chr5 173578380 173578638 + 2 NA Intergenic Intergenic -1125 NR_027109 285593 Hs.409730 NR_027108 ENSG00000253955 LOC285593 - uncharacterized LOC285593 ncRNA 454-139 chr2 15866382 15866724 + 2 NA Intergenic L1MC1|LINE|L1 -53846 NR_125783 103752554 Hs.269571 NR_125783 ENSG00000223850 MYCNUT MYCNUN|lncUSMycN MYCN upstream transcript ncRNA 372-113 chr12 54936236 54936458 + 2 NA Intergenic Intergenic 37385 NR_147072 9840 Hs.33187 NM_014796 ENSG00000135426 TESPA1 HSPC257|ITPRID3|KIAA0748 thymocyte expressed, positive selection associated 1 protein-coding 302-397 chr6 165349495 165349732 + 2 NA intron (NM_006661, intron 19 of 22) THE1C-int|LTR|ERVL-MaLR -40008 NM_144980 168090 Hs.144734 NM_144980 ENSG00000112539 C6orf118 bA85G2.1|dJ416F21.2 chromosome 6 open reading frame 118 protein-coding 254-194 chr2 118790999 118791206 + 2 NA Intergenic Intergenic 57081 NM_001426 2019 Hs.271977 NM_001426 ENSG00000163064 EN1 - engrailed homeobox 1 protein-coding 314-44 chr1 217368721 217368903 + 2 NA Intergenic L1ME4a|LINE|L1 -231110 NM_001350124 2104 Hs.444225 NM_001438 ENSG00000196482 ESRRG ERR-gamma|ERR3|ERRg|ERRgamma|NR3B3 estrogen related receptor gamma protein-coding 344-318 chr3 83209795 83210112 + 2 NA Intergenic MLT2B2|LTR|ERVL 1223811 NR_147146 105377180 Hs.531803 NR_147146 ENSG00000239440 LINC02008 - long intergenic non-protein coding RNA 2008 ncRNA 359-515 chr9 113049008 113049288 + 2 NA intron (NM_003408, intron 3 of 3) intron (NM_003408, intron 3 of 3) 7576 NM_003408 7539 Hs.150406 NM_003408 ENSG00000136866 ZFP37 ZNF906|zfp-37 ZFP37 zinc finger protein protein-coding 393-113 chr16 8540740 8541012 + 2 NA intron (NM_001290098, intron 2 of 2) L2b|LINE|L2 48962 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 729-33 chr2 7758215 7758682 + 2 NA Intergenic Intergenic 141207 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 774-89 chr8 130299449 130300035 + 2 NA intron (NM_001362925, intron 3 of 29) intron (NM_001362925, intron 3 of 29) -3209 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 329-27 chr1 193983576 193983865 + 2 NA Intergenic L1MEc|LINE|L1 678975 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 286-207 chr2 70634795 70635023 + 2 NA Intergenic L1MA7|LINE|L1 -81083 NM_003236 7039 Hs.170009 NM_003236 ENSG00000163235 TGFA TFGA transforming growth factor alpha protein-coding 389-146 chr18 37193779 37194149 + 2 NA intron (NR_136303, intron 10 of 13) L1ME4b|LINE|L1 -80496 NR_134588 105372068 Hs.569903 NR_134588 ENSG00000267202 LOC105372068 - uncharacterized LOC105372068 ncRNA 343-499 chr7 15217554 15217805 + 2 NA intron (NM_001004320, intron 12 of 12) intron (NM_001004320, intron 12 of 12) -242821 NM_001350711 1607 Hs.567255 NM_004080 ENSG00000136267 DGKB DAGK2|DGK|DGK-BETA diacylglycerol kinase beta protein-coding 311-235 chr2 7506745 7507024 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 85623 NR_038432 100506274 Hs.177930 NR_038432 ENSG00000229727 LOC100506274 - uncharacterized LOC100506274 ncRNA 343-560 chr8 131112028 131112329 + 2 NA Intergenic L1MA1|LINE|L1 -71269 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 451-21 chr1 228890181 228890587 + 2 NA Intergenic L1MEc|LINE|L1 154905 NM_021205 58480 Hs.647774 NM_021205 ENSG00000116574 RHOU ARHU|CDC42L1|G28K|WRCH1|hG28K ras homolog family member U protein-coding 347-69 chr11 37606511 37606773 + 2 NA Intergenic L1PA16|LINE|L1 -331959 NR_135110 105376633 Hs.135690 NR_135110 ENSG00000254516 LINC02760 - long intergenic non-protein coding RNA 2760 ncRNA 228-220 chr3 111654327 111654458 + 2 NA intron (NR_134917, intron 14 of 14) intron (NR_134917, intron 14 of 14) -20284 NM_153268 257068 Hs.477114 NM_153268 ENSG00000240891 PLCXD2 - phosphatidylinositol specific phospholipase C X domain containing 2 protein-coding 257-326 chr5 71948667 71948900 + 2 NA Intergenic LTR8|LTR|ERV1 -158692 NM_005909 4131 Hs.335079 NM_005909 ENSG00000131711 MAP1B FUTSCH|MAP5|PPP1R102 microtubule associated protein 1B protein-coding 464-133 chr2 158087915 158088284 + 2 NA intron (NM_001135098, intron 2 of 8) L1PB1|LINE|L1 -13771 NM_173355 151531 Hs.128427 NM_173355 ENSG00000007001 UPP2 UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 295-5 chr1 43345413 43345620 + 2 NA intron (NM_005373, intron 6 of 11) L2a|LINE|L2 7712 NM_005373 4352 Hs.82906 NM_005373 ENSG00000117400 MPL C-MPL|CD110|MPLV|THCYT2|THPOR|TPOR MPL proto-oncogene, thrombopoietin receptor protein-coding 368-219 chr19 39957555 39957782 + 2 NA Intergenic L1M5|LINE|L1 -13337 NM_153001 5704 Hs.211594 NM_006503 ENSG00000013275 PSMC4 MIP224|RPT3|S6|TBP-7|TBP7 proteasome 26S subunit, ATPase 4 protein-coding 120-53 chr9 84473383 84473467 + 2 NA Intergenic (TATATAT)n|Simple_repeat|Simple_repeat -104698 NM_022127 64078 Hs.535966 NM_022127 ENSG00000197506 SLC28A3 CNT3 solute carrier family 28 member 3 protein-coding 355-272 chr2 230320903 230321180 + 2 NA Intergenic Intergenic -6130 NM_001352893 93349 Hs.589661 NM_138402 ENSG00000185404 SP140L - SP140 nuclear body protein like protein-coding 564-124 chr3 46796905 46797272 + 2 NA Intergenic AluSx1|SINE|Alu 15486 NR_160551 729756 NR_160551 PRSS44P PRSS44|TESSP-4|TESSP4 serine protease 44, pseudogene pseudo 244-254 chr4 46645416 46645597 + 2 NA Intergenic Intergenic -255378 NM_001286827 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 211-17 chr1 184915758 184915891 + 2 NA intron (NM_052966, intron 1 of 13) intron (NM_052966, intron 1 of 13) 58684 NM_052966 116496 Hs.518662 NM_052966 ENSG00000135842 NIBAN1 C1orf24|FAM129A|GIG39|NIBAN niban apoptosis regulator 1 protein-coding 611-19 chr11 22897983 22898377 + 2 NA Intergenic Intergenic -37706 NM_001195637 100500938 Hs.555029 NM_001195637 ENSG00000255359 CCDC179 - coiled-coil domain containing 179 protein-coding 310-235 chr2 56648768 56649041 + 2 NA Intergenic Intergenic -463134 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 231-215 chr3 9042699 9042919 + 2 NA intron (NM_014850, intron 10 of 21) intron (NM_014850, intron 10 of 21) -79337 NM_020165 56852 Hs.375684 NM_020165 ENSG00000070950 RAD18 RNF73 RAD18 E3 ubiquitin protein ligase protein-coding 232-254 chr3 164286111 164286310 + 2 NA Intergenic Intergenic -114654 NR_031665 100302148 NR_031665 ENSG00000221251 MIR1263 MIRN1263|hsa-mir-1263 microRNA 1263 ncRNA 350-170 chr16 78909375 78909617 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 691241 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 736-66 chr4 128911837 128912330 + 2 NA intron (NM_144643, intron 18 of 20) intron (NM_144643, intron 18 of 20) 100239 NM_001287443 79960 Hs.12420 NM_024900 ENSG00000077684 JADE1 PHF17 jade family PHD finger 1 protein-coding 224-94 chr14 86350357 86350556 + 2 NA Intergenic Intergenic 415778 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 289-230 chr2 82159179 82159379 + 2 NA Intergenic Intergenic -692333 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 358-125 chr14 79662816 79663162 + 2 NA intron (NR_073547, intron 15 of 20) intron (NR_073547, intron 15 of 20) 383609 NM_138970 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 215-304 chr7 109347680 109347866 + 2 NA Intergenic Intergenic -463186 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 240-271 chr22 22979807 22979951 + 2 NA Intergenic HUERS-P3b-int|LTR|ERV1 -90640 NM_002073 2781 Hs.584760 NM_002073 ENSG00000128266 GNAZ gz-alpha G protein subunit alpha z protein-coding 366-113 chr12 118946600 118946804 + 2 NA Intergenic Intergenic -34839 NM_194286 84530 Hs.744964 NM_194286 ENSG00000139767 SRRM4 KIAA1853|MU-MB-2.76|nSR100 serine/arginine repetitive matrix 4 protein-coding 496-176 chr3 68601729 68602209 + 2 NA Intergenic L1MA8|LINE|L1 101332 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 348-473 chr6 148091400 148091594 + 2 NA Intergenic L1M3c|LINE|L1 -180831 NM_001346505 23328 Hs.193133 NM_015278 ENSG00000111961 SASH1 CAPOK|DUH1|SH3D6A|dJ323M4.1 SAM and SH3 domain containing 1 protein-coding 264-134 chr14 67837635 67837816 + 2 NA intron (NM_133509, intron 4 of 10) L1MA5|LINE|L1 14133 NM_001321815 5890 Hs.172587 NM_002877 ENSG00000182185 RAD51B R51H2|RAD51L1|REC2 RAD51 paralog B protein-coding 272-309 chr4 71289939 71290157 + 2 NA intron (NM_001098484, intron 3 of 25) intron (NM_001098484, intron 3 of 25) -49005 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 267-358 chr5 160653134 160653305 + 2 NA intron (NM_001366652, intron 6 of 24) intron (NM_001366652, intron 6 of 24) 32172 NM_001366658 23120 Hs.109358 NM_025153 ENSG00000118322 ATP10B ATPVB ATPase phospholipid transporting 10B (putative) protein-coding 263-356 chr6 52340927 52341121 + 2 NA Intergenic Intergenic -21127 NM_133367 85315 Hs.239388 NM_133367 ENSG00000170915 PAQR8 C6orf33|LMPB1|MPRB progestin and adipoQ receptor family member 8 protein-coding 400-81 chr14 21720393 21720732 + 2 NA Intergenic Intergenic -49545 NM_001317107 26687 NM_001317107 ENSG00000276240 OR4E1 OR4E1P olfactory receptor family 4 subfamily E member 1 (gene/pseudogene) protein-coding 298-422 chr7 23378801 23379092 + 2 NA intron (NM_006547, intron 3 of 14) intron (NM_006547, intron 3 of 14) -17500 NR_145734 109616981 NR_145734 ENSG00000212264 SNORD65C - small nucleolar RNA, C/D box 65C snoRNA 131-26 chr14 92719436 92719539 + 2 NA intron (NM_001363699, intron 3 of 12) intron (NM_001363699, intron 3 of 12) 29140 NM_001008530 5641 Hs.18069 NM_005606 ENSG00000100600 LGMN AEP|LGMN1|PRSC1 legumain protein-coding 257-101 chr13 57875064 57875257 + 2 NA Intergenic MSTB1|LTR|ERVL-MaLR 243416 NM_001040429 27253 Hs.106511 NM_014459 ENSG00000118946 PCDH17 PCDH68|PCH68 protocadherin 17 protein-coding 533-228 chr8 88765970 88766378 + 2 NA Intergenic Intergenic -438691 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 269-81 chr12 14873462 14873657 + 2 NA Intergenic MER57C1|LTR|ERV1 12295 NM_001190839 4256 Hs.365706 NM_000900 ENSG00000111341 MGP GIG36|MGLAP|NTI matrix Gla protein protein-coding 329-549 chr7 114767962 114768273 + 2 NA Intergenic MER103C|DNA|hAT-Charlie 114772 NR_037439 100500896 NR_037439 ENSG00000272230 MIR3666 - microRNA 3666 ncRNA 397-200 chr3 5356991 5357270 + 2 NA Intergenic MIR3|SINE|MIR -106875 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 285-315 chr4 173678827 173679085 + 2 NA Intergenic Intergenic 148498 NR_003679 79804 Hs.61435 NR_003679 ENSG00000237125 HAND2-AS1 DEIN|NBLA00301|UPH HAND2 antisense RNA 1 ncRNA 268-268 chr4 32894747 32894976 + 2 NA Intergenic Intergenic 543823 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 695-35 chr15 52090781 52091431 + 2 NA Intergenic AluY|SINE|Alu 21669 NM_001306168 10017 Hs.283672 NM_020396 ENSG00000137875 BCL2L10 BCL-B|Boo|Diva|bcl2-L-10 BCL2 like 10 protein-coding 289-252 chr2 201918601 201918875 + 2 NA Intergenic Intergenic 112159 NM_001366386 65061 Hs.348711 NM_139158 ENSG00000138395 CDK15 ALS2CR7|PFTAIRE2|PFTK2 cyclin dependent kinase 15 protein-coding 381-316 chr5 95382878 95383218 + 2 NA Intergenic L2a|LINE|L2 -8318 NM_152548 153643 Hs.276287 NM_152548 ENSG00000153347 FAM81B - family with sequence similarity 81 member B protein-coding 241-72 chr11 108120357 108120519 + 2 NA Intergenic AluJr|SINE|Alu -1129 NM_000019 38 Hs.232375 NM_000019 ENSG00000075239 ACAT1 ACAT|MAT|T2|THIL acetyl-CoA acetyltransferase 1 protein-coding 263-396 chr7 50878188 50878414 + 2 NA Intergenic L1PA10|LINE|L1 -84848 NM_001371008 344-502 chr8 126434198 126434449 + 2 NA Intergenic Intergenic 108828 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 212-347 chr9 74207523 74207701 + 2 NA Intergenic Intergenic -163919 NR_121182 101927358 Hs.559523 NR_121182 ENSG00000227809 LOC101927358 - uncharacterized LOC101927358 ncRNA 629-127 chr8 88402059 88402515 + 2 NA Intergenic Intergenic -74804 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 523-182 chr3 97355318 97355734 + 2 NA intron (NM_001080448, intron 5 of 17) L1M1|LINE|L1 -84081 NM_001278300 285220 Hs.272208 NM_173655 ENSG00000080224 EPHA6 EHK-2|EHK2|EK12|EPA6|HEK12|PRO57066 EPH receptor A6 protein-coding 342-415 chr5 104020250 104020530 + 2 NA Intergenic Intergenic -457601 NM_001300741 83594 Hs.434289 NM_031438 ENSG00000112874 NUDT12 - nudix hydrolase 12 protein-coding 228-317 chr7 48409353 48409519 + 2 NA intron (NM_152701, intron 39 of 61) intron (NM_152701, intron 39 of 61) 237978 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 273-246 chr2 211379250 211379466 + 2 NA 3' UTR (NM_005235, exon 28 of 28) 3' UTR (NM_005235, exon 28 of 28) 761787 NR_002763 29034 Hs.658398 NR_002763 ENSG00000280837 CPS1-IT1 CPS1-IT|CPS1IT|CPS1IT1|PRO0132 CPS1 intronic transcript 1 ncRNA 564-37 chr11 107205710 107206084 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -187421 NM_001256424 2977 Hs.24321 NM_000855 ENSG00000152402 GUCY1A2 GC-SA2|GUC1A2 guanylate cyclase 1 soluble subunit alpha 2 protein-coding 370-105 chr12 250745 251069 + 2 NA intron (NM_016615, intron 2 of 14) AluY|SINE|Alu 6392 NR_120482 102723544 Hs.669733 NR_120482 ENSG00000255746 LOC102723544 - uncharacterized LOC102723544 ncRNA 281-424 chr7 154506194 154506443 + 2 NA intron (NR_157196, intron 3 of 25) intron (NR_157196, intron 3 of 25) 201159 NM_001364502 1804 Hs.490684 NM_001936 ENSG00000130226 DPP6 DPL1|DPPX|MRD33|VF2 dipeptidyl peptidase like 6 protein-coding 320-424 chr5 23464153 23464402 + 2 NA Intergenic Intergenic -43332 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 429-286 chr7 135301187 135301556 + 2 NA Intergenic Intergenic 69392 NM_182489 346673 Hs.592279 NM_182489 ENSG00000146857 STRA8 - stimulated by retinoic acid 8 protein-coding 369-136 chr15 61280636 61280979 + 2 NA Intergenic Intergenic -51505 NM_134261 6095 Hs.560343 NM_002943 ENSG00000069667 RORA IDDECA|NR1F1|ROR1|ROR2|ROR3|RZR-ALPHA|RZRA RAR related orphan receptor A protein-coding 325-420 chr5 3005116 3005415 + 2 NA Intergenic Intergenic 87411 NR_136207 105374620 Hs.742780 NR_136207 LOC105374620 - uncharacterized LOC105374620 ncRNA 217-216 chr3 14904494 14904656 + 2 NA intron (NM_152536, intron 9 of 19) L1MC3|LINE|L1 42930 NR_046252 100505641 Hs.517821 NR_046251 ENSG00000225733 FGD5-AS1 - FGD5 antisense RNA 1 ncRNA 305-295 chr2 228252787 228253003 + 2 NA Intergenic L1PA16|LINE|L1 -71208 NM_001142644 80309 Hs.436306 NM_030623 ENSG00000153820 SPHKAP SKIP SPHK1 interactor, AKAP domain containing protein-coding 133-23 chr14 77804027 77804151 + 2 NA intron (NR_158988, intron 1 of 10) MIRc|SINE|MIR 3980 NM_001366490 57143 Hs.413208 NM_020421 ENSG00000063761 ADCK1 - aarF domain containing kinase 1 protein-coding 473-226 chr5 124356616 124357015 + 2 NA intron (NR_125774, intron 4 of 5) L2c|LINE|L2 81705 NR_125774 103724389 Hs.582211 NR_125774 LINC01170 - long intergenic non-protein coding RNA 1170 ncRNA 333-507 chr6 77197083 77197378 + 2 NA Intergenic (ATATGATAT)n|Simple_repeat|Simple_repeat 266792 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 337-518 chr7 47542215 47542428 + 2 NA intron (NM_022748, intron 1 of 30) L1MC4|LINE|L1 39790 NM_022748 64759 Hs.520814 NM_022748 ENSG00000136205 TNS3 TEM6|TENS1 tensin 3 protein-coding 330-227 chr18 56135497 56135804 + 2 NA intron (NR_040025, intron 1 of 8) intron (NR_040025, intron 1 of 8) 1886 NR_040026 100505474 Hs.662191 NR_040025 ENSG00000267712 LINC01539 - long intergenic non-protein coding RNA 1539 ncRNA 182-123 chr4 83749484 83749588 + 2 NA Intergenic Intergenic 213428 NM_032717 84803 Hs.99196 NM_032717 ENSG00000138678 GPAT3 AGPAT 10|AGPAT10|AGPAT8|AGPAT9|HMFN0839|LPAAT-theta|MAG1 glycerol-3-phosphate acyltransferase 3 protein-coding 138-26 chr15 59091212 59091294 + 2 NA intron (NM_001270529, intron 12 of 13) intron (NM_001270529, intron 12 of 13) -13893 NM_004701 9133 Hs.194698 NM_004701 ENSG00000157456 CCNB2 HsT17299 cyclin B2 protein-coding 656-65 chr2 167354894 167355455 + 2 NA Intergenic Intergenic 167802 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 291-373 chr5 179065077 179065226 + 2 NA intron (NM_014594, intron 2 of 4) L1MC3|LINE|L1 4778 NM_014594 30832 Hs.272328 NM_014594 ENSG00000177932 ZNF354C KID3 zinc finger protein 354C protein-coding 428-58 chr13 92453825 92454094 + 2 NA intron (NM_004466, intron 7 of 7) intron (NM_004466, intron 7 of 7) -36204 NR_049840 100847092 NR_049840 ENSG00000263741 MIR548AS - microRNA 548as ncRNA 742-49 chr22 49747794 49748361 + 2 NA Intergenic L1MB7|LINE|L1 76254 NM_001349941 23774 Hs.127950 NM_014577 ENSG00000100425 BRD1 BRL|BRPF1|BRPF2 bromodomain containing 1 protein-coding 302-469 chr8 128459508 128459783 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 105034 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 408-41 chr10 48251925 48252146 + 2 NA promoter-TSS (NM_001318191) promoter-TSS (NM_001318191) -278 NM_001318191 143162 Hs.664786 NM_152428 ENSG00000170324 FRMPD2 PDZD5C|PDZK4|PDZK5C FERM and PDZ domain containing 2 protein-coding 508-62 chr14 85925818 85926301 + 2 NA Intergenic L1MB7|LINE|L1 -8619 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 380-148 chr17 33035459 33035786 + 2 NA intron (NM_183377, intron 3 of 9) intron (NM_183377, intron 3 of 9) 42771 NM_001317225 124912 Hs.434112 NM_173847 ENSG00000141316 SPACA3 ALLP17|CT54|LYC3|LYZC|LYZL3|SLLP1 sperm acrosome associated 3 protein-coding 342-305 chr3 16799948 16800215 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -84874 NM_001144382 23228 Hs.202010 NM_015184 ENSG00000154822 PLCL2 PLCE2 phospholipase C like 2 protein-coding 205-107 chr16 5975544 5975723 + 2 NA Intergenic Intergenic -43391 NM_018723 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 355-29 chr1 238437704 238437960 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 48185 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 397-321 chr7 145087752 145088126 + 2 NA Intergenic L1ME3A|LINE|L1 -251886 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 297-441 chr7 63162515 63162749 + 2 NA Intergenic L1MEd|LINE|L1 141424 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 366-434 chr8 62387293 62387577 + 2 NA intron (NM_001304533, intron 1 of 6) intron (NM_001304533, intron 1 of 6) 138581 NM_001304533 286183 Hs.654662 NM_173688 ENSG00000185942 NKAIN3 FAM77D sodium/potassium transporting ATPase interacting 3 protein-coding 264-230 chr2 214995463 214995655 + 2 NA intron (NR_103740, intron 25 of 54) MIR3|SINE|MIR 36527 NM_015657 26154 Hs.134585 NM_015657 ENSG00000144452 ABCA12 ARCI4A|ARCI4B|ICR2B|LI2 ATP binding cassette subfamily A member 12 protein-coding 429-320 chr8 142281622 142281885 + 2 NA intron (NM_001366901, intron 11 of 13) intron (NM_001366901, intron 11 of 13) 83397 NR_024378 619434 Hs.393308 NR_024378 ENSG00000254008 LINC00051 C8orf43|NCRNA00051 long intergenic non-protein coding RNA 51 ncRNA 298-403 chr6 77706125 77706318 + 2 NA intron (NM_001282136, intron 2 of 4) MER39|LTR|ERV1 53182 NM_001322247 101928601 Hs.544538 NM_001282136 ENSG00000269964 MEI4 - meiotic double-stranded break formation protein 4 protein-coding 323-90 chr11 85522674 85522842 + 2 NA intron (NM_001142699, intron 3 of 27) THE1C-int|LTR|ERVL-MaLR 104512 NM_001142699 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 197-19 chr10 8562449 8562606 + 2 NA Intergenic Intergenic 31864 NR_134492 105376398 Hs.63158 NR_134492 LOC105376398 - uncharacterized LOC105376398 ncRNA 330-134 chr12 130915031 130915229 + 2 NA Intergenic L1MEc|LINE|L1 -38777 NM_001330497 283383 Hs.719239 NM_198827 ENSG00000111452 ADGRD1 GPR133|PGR25 adhesion G protein-coupled receptor D1 protein-coding 263-245 chr22 33243090 33243256 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 134644 NR_134617 105373006 Hs.637171 NR_134617 ENSG00000231253 LINC01640 - long intergenic non-protein coding RNA 1640 ncRNA 164-46 chr17 35044378 35044482 + 2 NA intron (NR_037713, intron 1 of 6) intron (NR_037713, intron 1 of 6) 19277 NM_001017368 117584 Hs.13680 NM_057178 ENSG00000092871 RFFL CARP-2|CARP2|FRING|RIFIFYLIN|RNF189|RNF34L ring finger and FYVE like domain containing E3 ubiquitin protein ligase protein-coding 368-71 chr11 14774663 14774991 + 2 NA intron (NM_000922, intron 2 of 15) L2a|LINE|L2 117378 NM_024514 120227 Hs.371427 NM_024514 ENSG00000186104 CYP2R1 - cytochrome P450 family 2 subfamily R member 1 protein-coding 420-218 chr4 188826854 188827133 + 2 NA Intergenic Tigger1|DNA|TcMar-Tigger 50336 NR_149102 105377610 NR_149102 ENSG00000251619 LINC02508 - long intergenic non-protein coding RNA 2508 ncRNA 289-435 chr7 26928520 26928694 + 2 NA Intergenic Intergenic -64017 NM_003930 8935 Hs.200770 NM_003930 ENSG00000005020 SKAP2 PRAP|RA70|SAPS|SCAP2|SKAP-HOM|SKAP55R src kinase associated phosphoprotein 2 protein-coding 348-422 chr5 112508984 112509250 + 2 NA Intergenic L1PA8|LINE|L1 89534 NR_027706 54508 Hs.591264 NR_027706 ENSG00000278921 EPB41L4A-DT EPB41L4A-AS2 EPB41L4A divergent transcript ncRNA 330-244 chr19 52059870 52060048 + 2 NA intron (NM_001369829, intron 7 of 7) MER51A|LTR|ERV1 -11121 NM_014650 9668 Hs.655934 NM_014650 ENSG00000256087 ZNF432 - zinc finger protein 432 protein-coding 476-75 chr14 27708363 27708722 + 2 NA Intergenic L1M3|LINE|L1 -35321 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 219-365 chr8 119813440 119813581 + 2 NA intron (NM_003184, intron 3 of 25) L3|LINE|CR1 19331 NM_003184 6873 Hs.122752 NM_003184 ENSG00000064313 TAF2 CIF150|MRT40|TAF2B|TAFII150 TATA-box binding protein associated factor 2 protein-coding 273-452 chr8 91609515 91609663 + 2 NA Intergenic Intergenic 360270 NM_134266 115111 Hs.354013 NM_052832 ENSG00000147606 SLC26A7 SUT2 solute carrier family 26 member 7 protein-coding 269-41 chr10 28757289 28757481 + 2 NA intron (NR_120652, intron 2 of 3) intron (NR_120652, intron 2 of 3) 13735 NR_120652 101929218 Hs.224866 NR_120652 LINC01517 - long intergenic non-protein coding RNA 1517 ncRNA 190-46 chr13 45656514 45656635 + 2 NA Intergenic L1ME3G|LINE|L1 -40835 NM_182542 220081 Hs.668747 NM_182542 ENSG00000165837 ERICH6B FAM194B glutamate rich 6B protein-coding 339-397 chr4 32208665 32208878 + 2 NA Intergenic L1PA13|LINE|L1 -142267 NR_134672 101927363 Hs.559406 NR_134672 ENSG00000251329 LINC02353 - long intergenic non-protein coding RNA 2353 ncRNA 340-487 chr6 145615994 145616189 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR 70786 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 257-41 chr10 59310028 59310244 + 2 NA intron (NM_001347852, intron 4 of 12) intron (NM_001347852, intron 4 of 12) 52413 NM_198215 220965 Hs.607594 NM_198215 ENSG00000148541 FAM13C FAM13C1 family with sequence similarity 13 member C protein-coding 621-3 chr1 97511335 97511689 + 2 NA intron (NM_000110, intron 13 of 22) intron (NM_000110, intron 13 of 22) -285409 NR_046591 100873933 Hs.568669 NR_046591 ENSG00000235777 DPYD-AS2 - DPYD antisense RNA 2 ncRNA 254-20 chr1 187336852 187337032 + 2 NA intron (NR_126347, intron 3 of 3) intron (NR_126347, intron 3 of 3) -106686 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 315-214 chr19 52424729 52424972 + 2 NA Intergenic Intergenic -4298 NM_001291368 147658 Hs.447583 NM_182512 ENSG00000198633 ZNF534 KRBO3 zinc finger protein 534 protein-coding 291-460 chr8 101870738 101871021 + 2 NA intron (NM_001040628, intron 4 of 7) intron (NM_001040628, intron 4 of 7) -79910 NM_032041 83988 Hs.492427 NM_032041 ENSG00000104490 NCALD - neurocalcin delta protein-coding 646-71 chr20 40497804 40498210 + 2 NA Intergenic Intergenic 191229 NM_005461 9935 Hs.169487 NM_005461 ENSG00000204103 MAFB DURS3|KRML|MCTO MAF bZIP transcription factor B protein-coding 217-73 chr11 81566465 81566597 + 2 NA Intergenic (CTAT)n|Simple_repeat|Simple_repeat 324305 NR_036186 100422823 NR_036186 ENSG00000264110 MIR4300 - microRNA 4300 ncRNA 359-145 chr14 60460425 60460647 + 2 NA intron (NM_174978, intron 13 of 17) intron (NM_174978, intron 13 of 17) 25527 NM_174978 317761 Hs.335754 NM_174978 ENSG00000179008 C14orf39 Six6os1 chromosome 14 open reading frame 39 protein-coding 471-51 chr11 85026886 85027344 + 2 NA intron (NM_001351274, intron 5 of 26) L1ME3G|LINE|L1 -103694 NM_001364 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 291-248 chr2 220203222 220203376 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -296734 NR_036228 100422959 NR_036228 ENSG00000266518 MIR4268 - microRNA 4268 ncRNA 361-488 chrX 66697720 66697945 + 2 NA Intergenic Intergenic -58534 NM_001199687 60401 Hs.302017 NM_021783 ENSG00000131080 EDA2R EDA-A2R|EDAA2R|TNFRSF27|XEDAR ectodysplasin A2 receptor protein-coding 327-296 chr20 42323775 42323982 + 2 NA intron (NM_133170, intron 11 of 31) L1MB7|LINE|L1 -361605 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 306-503 chr8 72764213 72764469 + 2 NA intron (NM_004770, intron 2 of 2) intron (NM_004770, intron 2 of 2) 32296 NR_110656 101926908 Hs.680588 NR_110656 ENSG00000253726 LOC101926908 - uncharacterized LOC101926908 ncRNA 317-234 chr2 98318808 98319084 + 2 NA Intergenic MER8|DNA|TcMar-Tigger -27209 NM_001298 1261 Hs.234785 NM_001298 ENSG00000144191 CNGA3 ACHM2|CCNC1|CCNCa|CCNCalpha|CNCG3|CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 561-45 chr12 29923704 29924217 + 2 NA Intergenic L1MA10|LINE|L1 -139201 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 202-113 chr2 28483785 28483963 + 2 NA Intergenic MER89-int|LTR|ERV1 -12186 NM_153021 151056 Hs.444933 NM_153021 ENSG00000163803 PLB1 PLB|PLB/LIP phospholipase B1 protein-coding 269-237 chr21 30996922 30997116 + 2 NA Intergenic Intergenic 41457 NM_001099219 728299 Hs.580875 NM_001099219 ENSG00000206102 KRTAP19-8 - keratin associated protein 19-8 protein-coding 359-402 chr5 94614776 94615012 + 2 NA intron (NM_001145678, intron 1 of 20) intron (NM_001145678, intron 1 of 20) 3710 NM_001145678 285600 Hs.425123 NM_173665 ENSG00000185261 KIAA0825 C5orf36 KIAA0825 protein-coding 390-119 chr15 91112478 91112846 + 2 NA intron (NM_001323039, intron 1 of 12) intron (NM_001323039, intron 1 of 12) 10866 NM_001323039 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 445-38 chr11 81173444 81173831 + 2 NA Intergenic L2a|LINE|L2 -410834 NR_120570 101928944 Hs.547927 NR_120570 ENSG00000255178 LINC02720 - long intergenic non-protein coding RNA 2720 ncRNA 292-232 chr2 146609662 146609918 + 2 NA Intergenic Intergenic 22733 NR_026904 728773 Hs.334462 NR_026904 PABPC1P2 PABP2|PABP4|PABPCP2|PABPCP4 poly(A) binding protein cytoplasmic 1 pseudogene 2 pseudo 383-366 chr7 114485724 114485985 + 2 NA intron (NR_033767, intron 2 of 17) MIR|SINE|MIR 59352 NM_001172767 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 392-58 chr12 28883354 28883717 + 2 NA Intergenic L2a|LINE|L2 -265743 NM_001271783 55711 Hs.684482 NM_018099 ENSG00000064763 FAR2 HEL-S-81|MLSTD1|SDR10E2 fatty acyl-CoA reductase 2 protein-coding 580-122 chr3 143938282 143938690 + 2 NA Intergenic L1PA10|LINE|L1 -33312 NM_173552 205428 Hs.288954 NM_173552 ENSG00000181744 DIPK2A C3orf58|DIA1|GoPro49|HASF divergent protein kinase domain 2A protein-coding 406-19 chr1 190843745 190844123 + 2 NA Intergenic Intergenic 219044 NR_033922 440704 NR_033922 ENSG00000231175 LINC01720 - long intergenic non-protein coding RNA 1720 ncRNA 546-188 chr5 33039855 33040257 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 92613 NR_033832 340113 Hs.434404 NR_033832 ENSG00000248279 LINC02120 - long intergenic non-protein coding RNA 2120 ncRNA 376-74 chr11 79955967 79956228 + 2 NA Intergenic Intergenic -515067 NM_001098816 26011 Hs.213087 NM_001098816 ENSG00000149256 TENM4 Doc4|ETM5|ODZ4|TNM4|Ten-M4|ten-4 teneurin transmembrane protein 4 protein-coding 300-236 chr20 24028360 24028557 + 2 NA Intergenic Intergenic -39679 NM_178311 92086 Hs.355394 NM_080920 ENSG00000149435 GGTLC1 GGTL6|GGTLA3|GGTLA4|dJ831C21.1|dJ831C21.2 gamma-glutamyltransferase light chain 1 protein-coding 224-42 chr10 118685020 118685151 + 2 NA 3' UTR (NM_153810, exon 9 of 9) 3' UTR (NM_153810, exon 9 of 9) 69885 NM_153810 143384 Hs.420024 NM_153810 ENSG00000151893 CACUL1 C10orf46|CAC1 CDK2 associated cullin domain 1 protein-coding 403-24 chr10 10521468 10521735 + 2 NA intron (NM_001326317, intron 1 of 14) intron (NM_001326317, intron 1 of 14) 59051 NM_001326320 10659 Hs.309288 NM_006561 ENSG00000048740 CELF2 BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR CUGBP Elav-like family member 2 protein-coding 245-334 chr7 116776357 116776539 + 2 NA intron (NM_000245, intron 15 of 20) intron (NM_000245, intron 15 of 20) -86139 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 332-502 chr7 109273960 109274284 + 2 NA Intergenic L1MA10|LINE|L1 -389535 NM_001024607 154907 Hs.276325 NM_001024607 C7orf66 - chromosome 7 open reading frame 66 protein-coding 504-151 chr20 47778945 47779362 + 2 NA intron (NM_198596, intron 1 of 20) intron (NM_198596, intron 1 of 20) 6911 NM_018837 55959 Hs.162016 NM_018837 ENSG00000196562 SULF2 HSULF-2 sulfatase 2 protein-coding 425-274 chr7 5056808 5057084 + 2 NA intron (NM_001204513, intron 2 of 5) L2c|LINE|L2 11086 NM_001204513 100533952 NM_001204513 ENSG00000272968 RBAK-RBAKDN RBAK|RBAK-LOC389458|ZNF769|hRBaK RBAK-RBAKDN readthrough protein-coding 254-147 chr17 6273146 6273333 + 2 NA Intergenic Intergenic 161882 NM_001285401 23746 Hs.279887 NM_014336 ENSG00000129221 AIPL1 AIPL2|LCA4 aryl hydrocarbon receptor interacting protein like 1 protein-coding 654-62 chr2 13710240 13710673 + 2 NA Intergenic MLT2D|LTR|ERVL 690502 NR_103814 100499171 Hs.565606 NR_103814 ENSG00000230448 LINC00276 NCRNA00276 long intergenic non-protein coding RNA 276 ncRNA 333-458 chr5 86770102 86770327 + 2 NA Intergenic L1M3|LINE|L1 23396 NR_105017 100505878 Hs.246405 NR_105017 LINC02059 - long intergenic non-protein coding RNA 2059 ncRNA 412-315 chr7 93158948 93159231 + 2 NA Intergenic HERV16-int|LTR|ERVL -10704 NM_152703 219285 Hs.489118 NM_152703 ENSG00000177409 SAMD9L ATXPC|C7orf6|DRIF2|UEF1 sterile alpha motif domain containing 9 like protein-coding 237-158 chr19 51993626 51993809 + 2 NA exon (NM_001321317, exon 4 of 4) exon (NM_001321317, exon 4 of 4) -6877 NM_021632 59348 Hs.407694 NM_021632 ENSG00000256683 ZNF350 ZBRK1|ZFQR zinc finger protein 350 protein-coding 405-277 chr6 61718772 61719112 + 2 NA intron (NR_146872, intron 7 of 9) intron (NR_146872, intron 7 of 9) 144812 NM_001190706 100463487 NM_001190706 MTRNR2L9 HN9 MT-RNR2 like 9 protein-coding 289-35 chr1 214960848 214961048 + 2 NA Intergenic Intergenic -44594 NM_001017424 3776 Hs.497745 NM_014217 ENSG00000082482 KCNK2 K2p2.1|TPKC1|TREK|TREK-1|TREK1|hTREK-1c|hTREK-1e potassium two pore domain channel subfamily K member 2 protein-coding 417-78 chr14 43835896 43836274 + 2 NA Intergenic Intergenic 671198 NM_032135 84075 Hs.307086 NM_032135 ENSG00000189139 FSCB C14orf155 fibrous sheath CABYR binding protein protein-coding 328-154 chr14 63833866 63834179 + 2 NA Intergenic Intergenic -18943 NM_182914 23224 Hs.745014 NM_015180 ENSG00000054654 SYNE2 EDMD5|KASH2|NUA|NUANCE|Nesp2|Nesprin-2|SYNE-2|TROPH spectrin repeat containing nuclear envelope protein 2 protein-coding 283-211 chr19 40595561 40595842 + 2 NA intron (NM_003573, intron 1 of 32) intron (NM_003573, intron 1 of 32) -1534 NM_001042544 8425 Hs.466766 NM_003573 ENSG00000090006 LTBP4 ARCL1C|LTBP-4|LTBP4L|LTBP4S latent transforming growth factor beta binding protein 4 protein-coding 506-19 chr1 175726105 175726480 + 2 NA intron (NM_003285, intron 1 of 22) intron (NM_003285, intron 1 of 22) 17303 NM_001328635 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 301-264 chr21 44891076 44891322 + 2 NA intron (NM_001303238, intron 11 of 15) intron (NM_001303238, intron 11 of 15) -17296 NR_104597 754 Hs.474010 NM_004339 ENSG00000183255 PTTG1IP C21orf1|C21orf3|PBF PTTG1 interacting protein protein-coding 222-37 chr10 59049487 59049679 + 2 NA Intergenic L1PA16|LINE|L1 50065 NR_108046 100507008 Hs.170953 NR_108046 LINC00844 - long intergenic non-protein coding RNA 844 ncRNA 378-212 chr2 15014283 15014633 + 2 NA Intergenic L1MA5A|LINE|L1 381741 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 664-111 chr7 120255303 120255776 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -17636 NM_012281 3751 Hs.654739 NM_012281 ENSG00000184408 KCND2 KV4.2|RK5 potassium voltage-gated channel subfamily D member 2 protein-coding 372-329 chr3 80131206 80131425 + 2 NA Intergenic L1ME2|LINE|L1 -363317 NM_002941 6091 Hs.744218 NM_002941 ENSG00000169855 ROBO1 DUTT1|SAX3 roundabout guidance receptor 1 protein-coding 189-11 chr10 6766498 6766649 + 2 NA Intergenic Intergenic 12607 NR_108074 100652997 Hs.255086 NR_108074 ENSG00000281186 LINC00706 - long intergenic non-protein coding RNA 706 ncRNA 307-386 chr5 78175498 78175677 + 2 NA intron (NM_003664, intron 11 of 26) intron (NM_003664, intron 11 of 26) 119111 NM_001271769 8546 Hs.532091 NM_003664 ENSG00000132842 AP3B1 ADTB3|ADTB3A|HPS|HPS2|PE adaptor related protein complex 3 subunit beta 1 protein-coding 478-93 chr15 24641817 24642139 + 2 NA Intergenic Intergenic -33416 NM_018958 23742 Hs.649663 NM_018958 ENSG00000185823 NPAP1 C15orf2 nuclear pore associated protein 1 protein-coding 230-79 chr12 34049031 34049151 + 2 NA Intergenic L1PB1|LINE|L1 26595 NM_032834 84920 Hs.102971 NM_032834 ENSG00000139133 ALG10 ALG10A|DIE2|KCR1 ALG10 alpha-1,2-glucosyltransferase protein-coding 273-52 chr10 53572881 53573093 + 2 NA Intergenic Charlie8|DNA|hAT-Charlie -801287 NM_000242 4153 Hs.499674 NM_000242 ENSG00000165471 MBL2 COLEC1|HSMBPC|MBL|MBL2D|MBP|MBP-C|MBP1|MBPD mannose binding lectin 2 protein-coding 372-213 chr2 17885131 17885338 + 2 NA intron (NM_002252, intron 1 of 2) intron (NM_002252, intron 1 of 2) 6567 NM_002252 3790 Hs.414489 NM_002252 ENSG00000170745 KCNS3 KV9.3 potassium voltage-gated channel modifier subfamily S member 3 protein-coding 335-560 chr9 26954022 26954307 + 2 NA intron (NM_001099222, intron 1 of 19) L2c|LINE|L2 2143 NR_121605 101929602 Hs.127665 NR_121605 ENSG00000234676 IFT74-AS1 - IFT74 antisense RNA 1 ncRNA 625-78 chr5 7354033 7354448 + 2 NA Intergenic L1MC1|LINE|L1 -6263 NR_134277 101929261 Hs.308202 NR_134277 ENSG00000250668 LINC02123 - long intergenic non-protein coding RNA 2123 ncRNA 351-136 chr14 78917244 78917421 + 2 NA intron (NM_004796, intron 7 of 16) L1PREC2|LINE|L1 -282650 NR_135159 105370586 NR_135159 ENSG00000258419 LOC105370586 - uncharacterized LOC105370586 ncRNA 352-88 chr11 115196771 115197013 + 2 NA intron (NM_001301045, intron 8 of 10) intron (NM_001301045, intron 8 of 10) -136685 NR_135108 105369509 Hs.736064 NR_135108 LOC105369509 - uncharacterized LOC105369509 ncRNA 412-158 chr2 71960589 71960817 + 2 NA Intergenic L1MC1|LINE|L1 187159 NM_001277742 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 243-324 chr4 67599574 67599757 + 2 NA intron (NM_012108, intron 8 of 8) AluSz|SINE|Alu 40938 NM_001317769 26228 Hs.435579 NM_012108 ENSG00000035720 STAP1 BRDG1|STAP-1 signal transducing adaptor family member 1 protein-coding 188-49 chr14 24686161 24686334 + 2 NA Intergenic LTR86C|LTR|ERVL -52057 NR_144343 3002 Hs.1051 NM_004131 ENSG00000100453 GZMB C11|CCPI|CGL-1|CGL1|CSP-B|CSPB|CTLA1|CTSGL1|HLP|SECT granzyme B protein-coding 283-81 chr11 63414351 63414591 + 2 NA Intergenic L1MA9|LINE|L1 44686 NM_080866 114571 Hs.502772 NM_080866 ENSG00000149742 SLC22A9 HOAT4|OAT4|OAT7|UST3H|ust3 solute carrier family 22 member 9 protein-coding 396-195 chr20 42399884 42400102 + 2 NA intron (NM_133170, intron 9 of 31) intron (NM_133170, intron 9 of 31) -285490 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 359-149 chr14_GL000225v1_random 23672 23921 + 2 NA NA BSR/Beta|Satellite|Satellite NA NA 259-109 chr14 31702020 31702213 + 2 NA intron (NR_120408, intron 6 of 9) MER77B|LTR|ERVL -12453 NM_001201574 80224 Hs.288981 NM_025152 ENSG00000151413 NUBPL C14orf127|IND1|MC1DN21|huInd1 nucleotide binding protein like protein-coding 416-191 chr2 190824135 190824479 + 2 NA Intergenic L1M4b|LINE|L1 -56514 NM_001256310 2744 Hs.116448 NM_014905 ENSG00000115419 GLS AAD20|CASGID|EIEE71|GAC|GAM|GDPAG|GLS1|KGA glutaminase protein-coding 195-128 chr20 54237718 54237856 + 2 NA Intergenic Intergenic 29700 NM_002623 5203 Hs.91161 NM_002623 ENSG00000101132 PFDN4 C1|PFD4 prefoldin subunit 4 protein-coding 364-272 chr3 40569195 40569422 + 2 NA Intergenic LTR8B|LTR|ERV1 44348 NM_198484 285268 Hs.19977 NM_198484 ENSG00000172888 ZNF621 - zinc finger protein 621 protein-coding 272-476 chr9 79847290 79847426 + 2 NA intron (NR_121213, intron 1 of 2) L1M4c|LINE|L1 22828 NR_121213 101927477 Hs.571630 NR_121212 LINC01507 XLOC_000303 long intergenic non-protein coding RNA 1507 ncRNA 302-464 chr8 122374592 122374795 + 2 NA Intergenic Intergenic 193951 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 395-336 chr8 84294122 84294407 + 2 NA intron (NM_001354320, intron 2 of 9) intron (NM_001354320, intron 2 of 9) 109598 NM_001100391 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 528-153 chr22 48165417 48165802 + 2 NA Intergenic Intergenic -108755 NR_036172 100422916 NR_036172 ENSG00000266508 MIR3201 - microRNA 3201 ncRNA 220-114 chr15 44165864 44166060 + 2 NA intron (NM_001286490, intron 1 of 15) L1ME4c|LINE|L1 28484 NM_001286490 84978 Hs.578544 NM_032892 ENSG00000171877 FRMD5 - FERM domain containing 5 protein-coding 217-38 chr10 43762319 43762527 + 2 NA Intergenic L1MC5a|LINE|L1 16402 NR_134484 102724264 Hs.140667 NR_134483 ENSG00000234973 LINC02658 - long intergenic non-protein coding RNA 2658 ncRNA 266-78 chr12 2501765 2501927 + 2 NA intron (NM_199460, intron 7 of 49).2 intron (NM_199460, intron 7 of 49).2 170374 NR_046579 100874235 Hs.667644 NR_046579 ENSG00000256271 CACNA1C-AS2 - CACNA1C antisense RNA 2 ncRNA 306-120 chr13 33596385 33596685 + 2 NA intron (NM_001243476, intron 3 of 17) L1MA4|LINE|L1 80259 NM_001243476 90627 Hs.156551 NM_052851 ENSG00000133121 STARD13 ARHGAP37|DLC2|GT650|LINC00464 StAR related lipid transfer domain containing 13 protein-coding 144-54 chr22 35994961 35995065 + 2 NA intron (NM_001082578, intron 1 of 13) intron (NM_001082578, intron 1 of 13) -33383 NM_001349989 23543 Hs.282998 NM_014309 ENSG00000100320 RBFOX2 FOX2|Fox-2|HNRBP2|HRNBP2|RBM9|RTA|dJ106I20.3|fxh RNA binding fox-1 homolog 2 protein-coding 195-131 chr21 18934579 18934743 + 2 NA Intergenic L2|LINE|L2 -174849 NR_109925 101927797 Hs.551743 NR_109925 MIR548XHG - MIR548X host gene ncRNA 336-404 chr4 44379963 44380171 + 2 NA intron (NM_198353, intron 1 of 1) (ATATAG)n|Simple_repeat|Simple_repeat 68742 NM_198353 386617 Hs.479644 NM_198353 ENSG00000183783 KCTD8 - potassium channel tetramerization domain containing 8 protein-coding 288-353 chr6 11896266 11896520 + 2 NA Intergenic L1MC1|LINE|L1 104851 NR_125853 101928253 Hs.128163 NR_125853 LOC101928253 - uncharacterized LOC101928253 ncRNA 287-405 chr8 87193345 87193556 + 2 NA intron (NM_173538, intron 4 of 10) L3|LINE|CR1 327035 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 295-419 chr6 142464551 142464814 + 2 NA Intergenic Intergenic 162675 NM_198569 57211 Hs.743302 NM_020455 ENSG00000112414 ADGRG6 APG1|DREG|GPR126|LCCS9|PR126|PS1TP2|VIGR adhesion G protein-coupled receptor G6 protein-coding 194-129 chr3 121958311 121958452 + 2 NA Intergenic L1M1|LINE|L1 63866 NM_001199800 286676 Hs.98484 NM_175924 ENSG00000145103 ILDR1 DFNB42|ILDR1alpha|ILDR1alpha'|ILDR1beta immunoglobulin like domain containing receptor 1 protein-coding 363-262 chr20 53368877 53369203 + 2 NA intron (NM_173485, intron 2 of 2) AluJb|SINE|Alu -183730 NR_110051 101927770 NR_110051 LOC101927770 - uncharacterized LOC101927770 ncRNA 384-389 chr8 139519800 139520053 + 2 NA Intergenic L1MA5A|LINE|L1 183197 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 374-135 chr17 437464 437745 + 2 NA Intergenic Intergenic 8336 NM_182705 359845 Hs.345588 NM_182705 ENSG00000183688 RFLNB CFM1|FAM101B refilin B protein-coding 457-38 chr11 106135298 106135602 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR -3334 NR_135099 105369473 Hs.524010 NR_135099 ENSG00000254580 LINC02719 - long intergenic non-protein coding RNA 2719 ncRNA 377-102 chr13 31309241 31309472 + 2 NA intron (NM_194318, intron 12 of 14) MER21A|LTR|ERVL 109381 NM_194318 145173 Hs.13205 NM_194318 ENSG00000187676 B3GLCT B3GALTL|B3GTL|B3Glc-T|Gal-T|beta3Glc-T beta 3-glucosyltransferase protein-coding 406-164 chr20 23410034 23410392 + 2 NA intron (NM_001283026, intron 1 of 9) L1MC4|LINE|L1 11275 NR_104266 63908 Hs.269471 NM_022080 ENSG00000125814 NAPB SNAP-BETA|SNAPB NSF attachment protein beta protein-coding 542-151 chr4 71502552 71503024 + 2 NA intron (NM_003759, intron 13 of 22) L1M2|LINE|L1 163735 NM_003759 8671 Hs.5462 NM_003759 ENSG00000080493 SLC4A4 HNBC1|KNBC|NBC1|NBC2|NBCe1-A|SLC4A5|hhNMC|kNBC1|pNBC solute carrier family 4 member 4 protein-coding 604-91 chr2 162918668 162919167 + 2 NA Intergenic Intergenic -80150 NM_173162 90134 Hs.657413 NM_033272 ENSG00000184611 KCNH7 ERG3|HERG3|Kv11.3 potassium voltage-gated channel subfamily H member 7 protein-coding 240-310 chr4 17138422 17138653 + 2 NA Intergenic Intergenic 47520 NR_125919 101929123 Hs.638913 NR_125919 ENSG00000250819 LINC02493 - long intergenic non-protein coding RNA 2493 ncRNA 484-106 chr19 44444729 44445074 + 2 NA intron (NM_001278510, intron 2 of 5) L2a|LINE|L2 3571 NR_103551 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 298-83 chr11 111258269 111258456 + 2 NA intron (NM_198498, intron 2 of 4) intron (NM_198498, intron 2 of 4) 12637 NM_198498 341032 Hs.298685 NM_198498 ENSG00000150750 C11orf53 - chromosome 11 open reading frame 53 protein-coding 370-397 chr6 72334689 72334931 + 2 NA intron (NM_001350433, intron 21 of 25) intron (NM_001350433, intron 21 of 25) -31936 NM_001168411 22999 Hs.485729 NM_014989 ENSG00000079841 RIMS1 CORD7|RAB3IP2|RIM|RIM1 regulating synaptic membrane exocytosis 1 protein-coding 217-201 chr20 4179379 4179546 + 2 NA intron (NM_175841, intron 3 of 3) intron (NM_175841, intron 3 of 3) -13628 NR_033917 728228 Hs.636379 NR_033917 ENSG00000230176 LINC01433 - long intergenic non-protein coding RNA 1433 ncRNA 367-394 chr6 74666325 74666533 + 2 NA intron (NR_110856, intron 2 of 3) MLT1H2|LTR|ERVL-MaLR 462353 NR_145788 109623475 NR_145788 SNORD156 - small nucleolar RNA, C/D box 156 snoRNA 211-149 chr2 141074271 141074428 + 2 NA intron (NM_018557, intron 7 of 90) intron (NM_018557, intron 7 of 90) -487664 NR_106979 102465692 NR_106979 ENSG00000283506 MIR7157 hsa-mir-7157 microRNA 7157 ncRNA 317-120 chr12 130272650 130272911 + 2 NA Intergenic Intergenic -65107 NM_004764 9271 Hs.405659 NM_004764 ENSG00000125207 PIWIL1 CT80.1|HIWI|MIWI|PIWI piwi like RNA-mediated gene silencing 1 protein-coding 501-170 chr3 85999667 86000113 + 2 NA intron (NM_001256502, intron 9 of 10) intron (NM_001256502, intron 9 of 10) -171840 NR_046752 100874037 Hs.570566 NR_046752 ENSG00000241648 CADM2-AS2 - CADM2 antisense RNA 2 ncRNA 499-194 chr5 9533166 9533421 + 2 NA intron (NM_003966, intron 1 of 22) intron (NM_003966, intron 1 of 22) 12782 NM_003966 9037 Hs.27621 NM_003966 ENSG00000112902 SEMA5A SEMAF|semF semaphorin 5A protein-coding 784-16 chr12 60101994 60102739 + 2 NA Intergenic Intergenic 412996 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 245-324 chr7 30788428 30788629 + 2 NA intron (NR_037598, intron 6 of 19) Charlie1a|DNA|hAT-Charlie 17111 NM_032222 84182 Hs.660192 NM_032222 ENSG00000106125 MINDY4 AQP-1|AQP1|C7orf67|CHIP28|FAM188B MINDY lysine 48 deubiquitinase 4 protein-coding 644-70 chr4 42199835 42200320 + 2 NA Intergenic Intergenic -47422 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 174-52 chr17 59655344 59655511 + 2 NA intron (NM_001288653, intron 5 of 31) Tigger1|DNA|TcMar-Tigger 35532 NM_004859 1213 Hs.491351 NM_004859 ENSG00000141367 CLTC CHC|CHC17|CLH-17|CLTCL2|Hc|MRD56 clathrin heavy chain protein-coding 392-305 chr7 46368033 46368354 + 2 NA Intergenic L1MC4a|LINE|L1 328929 NR_134575 730338 Hs.640207 NR_134575 ENSG00000233539 LOC730338 - uncharacterized LOC730338 ncRNA 537-124 chr2 121924887 121925214 + 2 NA Intergenic L1ME4a|LINE|L1 169399 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 181-8 chr1 182194245 182194339 + 2 NA Intergenic AluJr|SINE|Alu 119769 NR_104175 400799 Hs.634884 NR_104175 ENSG00000228918 LINC01344 GS1-122H1.2 long intergenic non-protein coding RNA 1344 ncRNA 242-205 chr2 197775346 197775499 + 2 NA intron (NM_001284358, intron 3 of 8) intron (NM_001284358, intron 3 of 8) 9897 NM_001284362 66037 Hs.169797 NM_033030 ENSG00000152430 BOLL BOULE boule homolog, RNA binding protein protein-coding 279-264 chr3 94421410 94421604 + 2 NA Intergenic L1PA15|LINE|L1 358446 NM_022072 63899 Hs.436594 NM_022072 ENSG00000178694 NSUN3 MST077|MSTP077 NOP2/Sun RNA methyltransferase 3 protein-coding 271-372 chr6 39066519 39066736 + 2 NA intron (NR_136563, intron 5 of 13) intron (NR_136563, intron 5 of 13) -7687 NR_162114 113218508 NR_162114 MIR9983 - microRNA 9983 ncRNA 286-432 chr7 83256380 83256569 + 2 NA Intergenic Intergenic -93590 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 271-384 chr6 89517533 89517741 + 2 NA intron (NM_001242809, intron 1 of 15) intron (NM_001242809, intron 1 of 15) -44681 NM_001242811 22881 Hs.702213 NM_014942 ENSG00000135299 ANKRD6 - ankyrin repeat domain 6 protein-coding 319-587 chrX 77531402 77531676 + 2 NA intron (NM_000489, intron 30 of 34) L1PA11|LINE|L1 84150 NM_003868 8823 Hs.666364 NM_003868 ENSG00000196468 FGF16 FGF-16|MF4 fibroblast growth factor 16 protein-coding 174-21 chr11 40910488 40910655 + 2 NA intron (NM_020929, intron 1 of 4) L1PA4|LINE|L1 549065 NM_020929 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 169-43 chr15 27682222 27682338 + 2 NA Intergenic Intergenic 417035 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 388-340 chr8 67872259 67872506 + 2 NA Intergenic AluSz|SINE|Alu -79664 NM_024870 80243 Hs.169943 NM_024870 ENSG00000046889 PREX2 DEP.2|DEPDC2|P-REX2|PPP1R129 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 protein-coding 524-85 chr16 79674744 79675233 + 2 NA Intergenic Intergenic -74251 NM_001031804 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 326-377 chr4 74067425 74067729 + 2 NA Intergenic HERV35I-int|LTR|ERV1 -12178 NR_026769 10895 Hs.3134 NM_006692 ENSG00000248848 PPBPP2 PPBPL2|SPBPBP pro-platelet basic protein pseudogene 2 pseudo 210-147 chr2 193482495 193482604 + 2 NA Intergenic MIR3|SINE|MIR 732704 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 194-231 chrUn_GL000216v2 60188 60337 + 2 NA NA (TTCCATTCCA)n|Simple_repeat|Simple_repeat NA NA 646-126 chr8 88994265 88994784 + 2 NA Intergenic L2a|LINE|L2 -667041 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 336-333 chr20 62773905 62774128 + 2 NA TTS (NR_046225) TTS (NR_046225) 2840 NR_046225 100652730 Hs.254951 NR_046224 LINC00659 - long intergenic non-protein coding RNA 659 ncRNA 256-459 chr9 135311727 135311953 + 2 NA Intergenic L1ME3|LINE|L1 -31409 NM_173520 157927 Hs.559511 NM_173520 C9orf62 - chromosome 9 open reading frame 62 protein-coding 421-300 chr8 91674600 91674929 + 2 NA Intergenic Intergenic 342916 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 369-70 chr11 107883960 107884152 + 2 NA Intergenic AluSp|SINE|Alu -25269 NM_017515 54733 Hs.524014 NM_017515 ENSG00000110660 SLC35F2 HSNOV1 solute carrier family 35 member F2 protein-coding 463-235 chr5 66097759 66098104 + 2 NA Intergenic L1M4|LINE|L1 -46369 NM_001323527 140890 Hs.49367 NM_139168 ENSG00000153914 SREK1 SFRS12|SRrp508|SRrp86 splicing regulatory glutamic acid and lysine rich protein 1 protein-coding 422-47 chr11 87778819 87779224 + 2 NA Intergenic Intergenic -59610 NR_135090 105369423 Hs.125442 NR_135090 ENSG00000255183 LINC02711 - long intergenic non-protein coding RNA 2711 ncRNA 293-349 chr5 115611207 115611491 + 2 NA intron (NR_109875, intron 2 of 2) L1ME3B|LINE|L1 -8870 NM_021649 353376 Hs.718838 NM_021649 ENSG00000243414 TICAM2 MyD88-4|TICAM-2|TIRAP3|TIRP|TRAM toll like receptor adaptor molecule 2 protein-coding 272-47 chr10 55635233 55635461 + 2 NA Intergenic Intergenic -7405 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 194-138 chr4 14690575 14690742 + 2 NA intron (NR_126435, intron 3 of 6) intron (NR_126435, intron 3 of 6) 197511 NR_126435 201853 Hs.551051 NR_126435 ENSG00000248360 LINC00504 - long intergenic non-protein coding RNA 504 ncRNA 533-177 chr5 44044671 44045044 + 2 NA Intergenic (AATAA)n|Simple_repeat|Simple_repeat -343875 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 205-215 chr5 7775732 7775907 + 2 NA intron (NM_020546, intron 18 of 24) intron (NM_020546, intron 18 of 24) 75314 NM_001089584 134121 Hs.709979 NM_001089584 ENSG00000215217 C5orf49 - chromosome 5 open reading frame 49 protein-coding 254-179 chr2 26262712 26262869 + 2 NA intron (NM_001281513, intron 4 of 16) intron (NM_001281513, intron 4 of 16) 17851 NM_000183 3032 Hs.515848 NM_000183 ENSG00000138029 HADHB ECHB|MSTP029|MTPB|TP-BETA hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta protein-coding 310-542 chr8 132262004 132262256 + 2 NA intron (NM_004519, intron 1 of 14) L1MB8|LINE|L1 -156865 NM_001145095 10086 Hs.285026 NM_005712 ENSG00000132297 HHLA1 PLA2L HERV-H LTR-associating 1 protein-coding 251-315 chr5 122998678 122998847 + 2 NA intron (NR_146145, intron 4 of 7) intron (NR_146145, intron 4 of 7) 37963 NM_000943 5480 Hs.110364 NM_000943 ENSG00000168938 PPIC CYPC peptidylprolyl isomerase C protein-coding 292-208 chr2 38213996 38214238 + 2 NA Intergenic Intergenic 83012 NR_027252 285154 Hs.353894 NM_173652 ENSG00000232973 CYP1B1-AS1 C2orf58 CYP1B1 antisense RNA 1 ncRNA 283-139 chr14 78008869 78009084 + 2 NA Intergenic AluJr|SINE|Alu -161397 NR_158973 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 229-402 chr8 131296750 131296924 + 2 NA Intergenic L1MB4|LINE|L1 -255928 NM_001115 114 Hs.591859 NM_001115 ENSG00000155897 ADCY8 AC8|ADCY3|HBAC1 adenylate cyclase 8 protein-coding 300-55 chr10 109391553 109391828 + 2 NA Intergenic Intergenic 531556 NM_001324136 7511 Hs.390623 NM_020383 ENSG00000108039 XPNPEP1 APP1|SAMP|XPNPEP|XPNPEPL|XPNPEPL1 X-prolyl aminopeptidase 1 protein-coding 320-2 chr1 14145952 14146201 + 2 NA Intergenic HAL1|LINE|L1 273897 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 283-278 chr3 5745502 5745745 + 2 NA Intergenic LTR85a|LTR|Gypsy? -495368 NR_039953 100616334 NR_039953 ENSG00000265180 MIR4790 - microRNA 4790 ncRNA 593-146 chr8 53773445 53773885 + 2 NA intron (NM_213620, intron 9 of 13) L1MEf|LINE|L1 69377 NM_213620 51606 Hs.491737 NM_015941 ENSG00000047249 ATP6V1H CGI-11|MSTP042|NBP1|SFD|SFDalpha|SFDbeta|VMA13 ATPase H+ transporting V1 subunit H protein-coding 401-107 chr15 91489075 91489305 + 2 NA intron (NR_110106, intron 2 of 3) intron (NR_110106, intron 2 of 3) 25851 NR_110106 101926928 Hs.638788 NR_110106 ENSG00000258551 CRAT37 - cervical cancer-associated transcript 37 ncRNA 341-217 chr19 31248459 31248643 + 2 NA intron (NR_138036, intron 1 of 4) AluJr|SINE|Alu 81041 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 335-20 chr1 112077366 112077559 + 2 NA Intergenic Intergenic 86926 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 337-444 chr5 44032407 44032733 + 2 NA Intergenic L1M1|LINE|L1 -356162 NR_108034 101927075 Hs.617390 NR_108034 ENSG00000248464 FGF10-AS1 - FGF10 antisense RNA 1 ncRNA 329-207 chr16 79956134 79956325 + 2 NA Intergenic Intergenic 160980 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 207-4 chr1 48995707 48995850 + 2 NA intron (NM_001323575, intron 5 of 12) L2a|LINE|L2 -218809 NR_146232 79656 Hs.475348 NM_024603 ENSG00000162373 BEND5 C1orf165 BEN domain containing 5 protein-coding 698-22 chr13 67983558 67984233 + 2 NA Intergenic Intergenic 611508 NR_130792 100874145 Hs.508194 NR_130792 ENSG00000230040 LINC00364 LncRNA00364 long intergenic non-protein coding RNA 364 ncRNA 195-159 chr4 27251836 27251971 + 2 NA intron (NR_125921, intron 3 of 5) intron (NR_125921, intron 3 of 5) 34424 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 378-142 chr14 78425886 78426137 + 2 NA intron (NM_004796, intron 1 of 16) intron (NM_004796, intron 1 of 16) 22292 NM_004796 9369 Hs.368307 NM_004796 ENSG00000021645 NRXN3 C14orf60 neurexin 3 protein-coding 372-512 chr9 34516657 34516865 + 2 NA intron (NM_001281428, intron 18 of 19) AluSz|SINE|Alu 6229 NM_198573 375704 Hs.522085 NM_198573 ENSG00000168913 ENHO C9orf165|UNQ470 energy homeostasis associated protein-coding 482-115 chr19 28315008 28315334 + 2 NA Intergenic Intergenic -291517 NR_135636 102724908 NR_135636 ENSG00000266976 LOC102724908 - uncharacterized LOC102724908 ncRNA 128-41 chr3 16234061 16234178 + 2 NA Intergenic Intergenic 17343 NM_001319052 117248 Hs.411308 NM_054110 ENSG00000131386 GALNT15 GALNACT15|GALNT13|GALNT7|GALNTL2|PIH5|pp-GalNAc-T15 polypeptide N-acetylgalactosaminyltransferase 15 protein-coding 279-403 chr7 153145686 153145861 + 2 NA Intergenic Intergenic 266461 NR_125776 103724390 Hs.614280 NR_125776 ENSG00000234722 LINC01287 TCONS_l2_00027522 long intergenic non-protein coding RNA 1287 ncRNA 350-271 chr20 39465552 39465814 + 2 NA Intergenic Intergenic -240935 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 330-301 chr2 168449014 168449211 + 2 NA Intergenic Intergenic -7160 NM_203463 253782 Hs.506829 NM_203463 ENSG00000172292 CERS6 CERS5|LASS6 ceramide synthase 6 protein-coding 389-202 chr20 16956809 16957132 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR 208617 NM_020157 56914 Hs.41119 NM_020157 ENSG00000125879 OTOR FDP|MIAL1 otoraplin protein-coding 345-96 chr11 91620605 91620778 + 2 NA Intergenic L1M1|LINE|L1 -604343 NM_001367949 120114 Hs.98523 NM_001008781 ENSG00000165323 FAT3 CDHF15|CDHR10|hFat3 FAT atypical cadherin 3 protein-coding 381-322 chr5 156590343 156590711 + 2 NA intron (NM_001128209, intron 4 of 7) intron (NM_001128209, intron 4 of 7) -259768 NM_206858 153743 Hs.567727 NM_206858 ENSG00000231989 PPP1R2B PPP1R2P3 PPP1R2 family member B protein-coding 253-313 chr4 185051940 185052170 + 2 NA intron (NR_147059, intron 1 of 8) AluSx|SINE|Alu 159 NR_147059 101928877 Hs.246506 NR_147059 ENSG00000250754 LINC02436 - long intergenic non-protein coding RNA 2436 ncRNA 147-31 chr16 62861036 62861126 + 2 NA Intergenic Intergenic -824643 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 819-5 chr12 1451238 1451835 + 2 NA intron (NR_027948, intron 19 of 19) AluJr|SINE|Alu -48955 NR_028415 100292680 Hs.391695 NR_028415 ENSG00000249628 LINC00942 - long intergenic non-protein coding RNA 942 ncRNA 190-41 chr12 85253611 85253766 + 2 NA Intergenic Intergenic -26532 NM_006982 8092 Hs.41683 NM_006982 ENSG00000180318 ALX1 CART1|FND3|HEL23 ALX homeobox 1 protein-coding 336-417 chr4 61436099 61436403 + 2 NA intron (NM_001371343, intron 2 of 23) intron (NM_001371343, intron 2 of 23) 234079 NM_001371342 529-65 chr14 42794101 42794473 + 2 NA Intergenic Intergenic 1187431 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 250-280 chr3 84257391 84257595 + 2 NA Intergenic Intergenic 612082 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 239-353 chr6 62912714 62912859 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 407191 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 360-105 chr13 56620080 56620409 + 2 NA Intergenic MIR|SINE|MIR -520674 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 468-64 chr12 97200355 97200741 + 2 NA Intergenic Intergenic -262228 NR_152618 196475 Hs.652568 NR_024037 ENSG00000255794 RMST LINC00054|NCRMS|NCRNA00054 rhabdomyosarcoma 2 associated transcript ncRNA 346-71 chr11 55049692 55050029 + 2 NA Intergenic ALR/Alpha|Satellite|centr -212295 NM_024114 79097 Hs.195715 NM_024114 ENSG00000150244 TRIM48 RNF101 tripartite motif containing 48 protein-coding 357-412 chr7 41093933 41094255 + 2 NA Intergenic Intergenic -7510 NR_110832 101928773 Hs.382363 NR_110832 ENSG00000224017 LINC01449 - long intergenic non-protein coding RNA 1449 ncRNA 227-304 chr6 24905674 24905856 + 2 NA intron (NM_001286446, intron 1 of 13) intron (NM_001286446, intron 1 of 13) 4969 NM_001346032 9750 Hs.559459 NM_014722 ENSG00000111913 RIPOR2 C6orf32|DFNB104|DIFF40|DIFF48|FAM65B|MYONAP|PL48 RHO family interacting cell polarization regulator 2 protein-coding 240-119 chr13 62786701 62786859 + 2 NA intron (NR_047029, intron 2 of 7) (TA)n|Simple_repeat|Simple_repeat 9912 NR_120404 100874176 Hs.402083 NR_047029 LINC00448 - long intergenic non-protein coding RNA 448 ncRNA 283-349 chr5 20089186 20089467 + 2 NA intron (NM_001291956, intron 2 of 14) intron (NM_001291956, intron 2 of 14) -101126 NM_001349559 1016 Hs.317632 NM_004934 ENSG00000145526 CDH18 CDH14|CDH14L|CDH24 cadherin 18 protein-coding 518-304 chr8 134067138 134067462 + 2 NA Intergenic Intergenic 180804 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 281-129 chr14 89224237 89224492 + 2 NA intron (NM_001085471, intron 4 of 6) MamRep1151|LTR?|LTR? 192869 NM_005197 1112 Hs.434286 NM_005197 ENSG00000053254 FOXN3 C14orf116|CHES1|PRO1635 forkhead box N3 protein-coding 443-185 chr20 53182250 53182573 + 2 NA intron (NM_173485, intron 1 of 2) intron (NM_173485, intron 1 of 2) -2872 NM_001193421 128553 Hs.473117 NM_173485 ENSG00000182463 TSHZ2 C20orf17|OVC10-2|TSH2|ZABC2|ZNF218 teashirt zinc finger homeobox 2 protein-coding 356-270 chr2 187024949 187025184 + 2 NA Intergenic L1MA4A|LINE|L1 -175896 NM_182521 151112 Hs.375054 NM_182521 ENSG00000163012 ZSWIM2 MEX|ZZZ2 zinc finger SWIM-type containing 2 protein-coding 333-525 chr7 9839649 9839966 + 2 NA Intergenic Intergenic 205537 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 276-255 chr20 4539703 4539897 + 2 NA Intergenic Intergenic -146656 NM_001271561 5621 Hs.472010 NM_000311 ENSG00000171867 PRNP ASCR|AltPrP|CD230|CJD|GSS|KURU|PRIP|PrP|PrP27-30|PrP33-35C|PrPc|p27-30 prion protein protein-coding 741-3 chr1 180832641 180833361 + 2 NA intron (NR_137330, intron 9 of 12) L1PA7|LINE|L1 -79896 NM_020950 57710 Hs.734816 NM_020950 ENSG00000135835 KIAA1614 - KIAA1614 protein-coding 221-3 chr1 45772300 45772499 + 2 NA Intergenic MER21A|LTR|ERVL -21586 NM_001145349 3652 Hs.744252 NM_005897 ENSG00000197429 IPP KLHL27 intracisternal A particle-promoted polypeptide protein-coding 476-289 chrX 96343645 96343972 + 2 NA Intergenic Intergenic -5906 NR_003539 643486 Hs.590806 NR_003539 ENSG00000271209 BRDTP1 - bromodomain testis associated pseudogene 1 pseudo 352-523 chr8 53426114 53426342 + 2 NA Intergenic L1MC3|LINE|L1 97737 NR_149032 100507516 Hs.597483 NR_149032 LOC100507516 - uncharacterized LOC100507516 ncRNA 197-172 chr5 101342006 101342120 + 2 NA Intergenic L1MB1|LINE|L1 -438781 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 223-368 chr9 96837558 96837756 + 2 NA intron (NM_001346995, intron 2 of 3) L1M4|LINE|L1 16857 NM_001346993 158431 Hs.30567 NM_001001662 ENSG00000196597 ZNF782 - zinc finger protein 782 protein-coding 187-134 chr4 189258085 189258246 + 2 NA Intergenic HAL1ME|LINE|L1 -401441 NR_121679 101928971 Hs.519164 NR_121679 ENSG00000250739 LINC01262 TCONS_l2_00021807 long intergenic non-protein coding RNA 1262 ncRNA 274-91 chr12 29819501 29819678 + 2 NA Intergenic Intergenic -34830 NM_175861 83857 Hs.401954 NM_031920 ENSG00000133687 TMTC1 ARG99|OLF|TMTC1A transmembrane O-mannosyltransferase targeting cadherins 1 protein-coding 417-12 chr1 110106345 110106659 + 2 NA intron (NR_126382, intron 1 of 3) intron (NR_126382, intron 1 of 3) -5941 NM_203412 164153 Hs.374027 NM_203412 ENSG00000186150 UBL4B - ubiquitin like 4B protein-coding 345-364 chr3 131447651 131447931 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 31442 NR_002985 677836 Hs.735762 NR_002985 SNORA58 ACA58|SNORA58B small nucleolar RNA, H/ACA box 58 snoRNA 400-314 chr6 145476021 145476243 + 2 NA Intergenic L1M1|LINE|L1 210745 NM_001368132 7957 Hs.486696 NM_005670 ENSG00000112425 EPM2A EPM2|MELF EPM2A glucan phosphatase, laforin protein-coding 565-131 chr4 84282910 84283295 + 2 NA intron (NR_125909, intron 4 of 8) intron (NR_125909, intron 4 of 8) 16067 NR_125909 101928978 Hs.647977 NR_125909 ENSG00000250546 LOC101928978 - uncharacterized LOC101928978 ncRNA 178-152 chr8 122388844 122389020 + 2 NA Intergenic Intergenic 179712 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 315-414 chr6 40180750 40180946 + 2 NA Intergenic MSTD|LTR|ERVL-MaLR 175158 NR_038887 401260 Hs.654837 NM_001001705 LINC00951 - long intergenic non-protein coding RNA 951 ncRNA 366-221 chr2 139301015 139301346 + 2 NA Intergenic Intergenic 403856 NR_033658 647012 Hs.639411 NR_033658 YY1P2 - YY1 transcription factor pseudogene 2 pseudo 312-543 chr9 31306303 31306546 + 2 NA Intergenic Intergenic 75066 NR_135134 101929620 Hs.547175 NR_135134 ENSG00000260720 LINC01243 - long intergenic non-protein coding RNA 1243 ncRNA 552-3 chr1 41937499 41937986 + 2 NA intron (NR_038261, intron 1 of 3) MLT1K|LTR|ERVL-MaLR -18820 NM_001127714 59269 Hs.403972 NM_024503 ENSG00000127124 HIVEP3 KBP-1|KBP1|KRC|SHN3|Schnurri-3|ZAS3|ZNF40C human immunodeficiency virus type I enhancer binding protein 3 protein-coding 233-152 chr2 3247537 3247694 + 2 NA intron (NM_001330531, intron 3 of 7) intron (NM_001330531, intron 3 of 7) -121589 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 465-65 chr12 48603838 48604209 + 2 NA Intergenic MLT2A1|LTR|ERVL -33977 NM_002289 3906 Hs.72938 NM_002289 ENSG00000167531 LALBA LYZG lactalbumin alpha protein-coding 155-88 chr6 67208059 67208154 + 2 NA Intergenic L1PB4|LINE|L1 -847245 NR_125869 102723883 Hs.566528 NR_125869 ENSG00000223504 LOC102723883 - uncharacterized LOC102723883 ncRNA 226-363 chr8 134096457 134096639 + 2 NA Intergenic Intergenic 210052 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 256-21 chr1 159434951 159435140 + 2 NA intron (NM_001363557, intron 4 of 4) intron (NM_001363557, intron 4 of 4) 2853 NM_001348286 391121 NM_001348286 ENSG00000249730 OR10J4 OR10J4P|OST717 olfactory receptor family 10 subfamily J member 4 (gene/pseudogene) protein-coding 339-23 chr1 101489459 101489687 + 2 NA Intergenic L1PA16|LINE|L1 165736 NR_126402 104355286 Hs.568671 NR_126402 ENSG00000231671 LINC01307 - long intergenic non-protein coding RNA 1307 ncRNA 624-132 chrUn_KI270442v1 146835 147260 + 2 NA NA ALR/Alpha|Satellite|centr NA NA 321-418 chr4 62715315 62715557 + 2 NA Intergenic L1M2|LINE|L1 -553671 NR_110595 101927186 Hs.723269 NR_110595 ADGRL3-AS1 LPHN3-AS1 adhesion G protein-coupled receptor L3 antisense RNA 1 ncRNA 362-416 chr7 118927646 118927928 + 2 NA Intergenic L1MCb|LINE|L1 703083 NM_019644 56311 Hs.729340 NM_019644 ENSG00000106013 ANKRD7 TSA806 ankyrin repeat domain 7 protein-coding 268-139 chr15 101507828 101508012 + 2 NA Intergenic HAL1|LINE|L1 -17936 NM_138325 5046 Hs.498494 NM_002570 ENSG00000140479 PCSK6 PACE4|SPC4 proprotein convertase subtilisin/kexin type 6 protein-coding 314-599 chr9 25248649 25248946 + 2 NA Intergenic L1M4c|LINE|L1 430061 NM_001004125 286319 Hs.26268 NM_001004125 ENSG00000198680 TUSC1 CCDC89B|TSG-9|TSG9 tumor suppressor candidate 1 protein-coding 407-31 chr10 65393585 65393829 + 2 NA Intergenic Intergenic -177718 NR_120647 101928913 Hs.568857 NR_120647 LINC01515 - long intergenic non-protein coding RNA 1515 ncRNA 774-7 chr10 49253182 49253848 + 2 NA Intergenic Intergenic 45378 NR_108038 100506769 Hs.562293 NR_108038 C10orf71-AS1 - C10orf71 antisense RNA 1 ncRNA 240-358 chr5 110330816 110331003 + 2 NA Intergenic Intergenic 183006 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 231-297 chr5 133536017 133536201 + 2 NA intron (NM_015082, intron 3 of 15) intron (NM_015082, intron 3 of 15) 76432 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 405-236 chr4 161969867 161970168 + 2 NA intron (NM_001128428, intron 3 of 14) intron (NM_001128428, intron 3 of 14) -52716 NR_125888 101928052 Hs.647993 NR_125888 ENSG00000249419 LOC101928052 - uncharacterized LOC101928052 ncRNA 369-239 chr20 10137031 10137268 + 2 NA intron (NR_040710, intron 2 of 4) intron (NR_040710, intron 2 of 4) -81649 NM_001322909 6616 Hs.167317 NM_003081 ENSG00000132639 SNAP25 CMS18|RIC-4|RIC4|SEC9|SNAP|SNAP-25|SUP|bA416N4.2|dJ1068F16.2 synaptosome associated protein 25 protein-coding 319-52 chr10 41889496 41889757 + 2 NA Intergenic (AATGG)n|Simple_repeat|Simple_repeat 478419 NR_024380 441666 Hs.255729 NR_024380 ENSG00000215146 LOC441666 - zinc finger protein 91 pseudogene pseudo 359-361 chr4 64683688 64683957 + 2 NA Intergenic Intergenic -274362 NM_001363796 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 273-438 chr8 4887102 4887369 + 2 NA intron (NM_033225, intron 1 of 69) L1MB7|LINE|L1 107679 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 374-262 chr3 133320118 133320368 + 2 NA intron (NM_001282865, intron 2 of 3) L1PB2|LINE|L1 -63122 NR_110812 101927455 Hs.570550 NR_110812 ENSG00000251011 TMEM108-AS1 - TMEM108 antisense RNA 1 ncRNA 413-316 chr8 139204063 139204360 + 2 NA Intergenic Intergenic -290170 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 328-252 chr2 50030843 50031069 + 2 NA intron (NM_001330093, intron 21 of 22) intron (NM_001330093, intron 21 of 22) -56753 NM_001320157 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 321-240 chr17 77387492 77387698 + 2 NA intron (NM_001113494, intron 1 of 10) intron (NM_001113494, intron 1 of 10) 9459 NR_036200 100422851 NR_036200 ENSG00000264060 MIR4316 - microRNA 4316 ncRNA 401-55 chr11 93430374 93430695 + 2 NA intron (NM_181645, intron 13 of 13) L1MB5|LINE|L1 99817 NM_181645 159989 Hs.436625 NM_181645 ENSG00000165325 DEUP1 CCDC67 deuterosome assembly protein 1 protein-coding 267-225 chr20 19074613 19074816 + 2 NA Intergenic Intergenic -137928 NM_020689 57419 Hs.654790 NM_020689 ENSG00000185052 SLC24A3 NCKX3 solute carrier family 24 member 3 protein-coding 371-368 chr7 116845668 116845873 + 2 NA Intergenic L1MC1|LINE|L1 -16817 NM_006136 830 Hs.446123 NM_006136 ENSG00000198898 CAPZA2 CAPPA2|CAPZ capping actin protein of muscle Z-line subunit alpha 2 protein-coding 254-138 chr16 7488807 7489016 + 2 NA intron (NM_145893, intron 1 of 13) (TATC)n|Simple_repeat|Simple_repeat 156066 NM_145893 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 448-236 chr6 41355442 41355808 + 2 NA Intergenic Intergenic 20017 NM_001199510 9436 Hs.194721 NM_004828 ENSG00000096264 NCR2 CD336|LY95|NK-p44|NKP44|dJ149M18.1 natural cytotoxicity triggering receptor 2 protein-coding 164-26 chr12 23248301 23248400 + 2 NA Intergenic L1ME2|LINE|L1 72714 NR_120471 101928441 Hs.129111 NR_120471 ENSG00000256321 LOC101928441 - uncharacterized LOC101928441 ncRNA 116-17 chr18 76792072 76792170 + 2 NA Intergenic Intergenic 30174 NR_040024 100131655 Hs.385806 NR_040024 ENSG00000264278 ZNF236-DT - ZNF236 divergent transcript ncRNA 593-33 chr12 44115683 44116215 + 2 NA intron (NM_001286212, intron 3 of 6) L2c|LINE|L2 279868 NM_032256 84216 Hs.444668 NM_032256 ENSG00000139173 TMEM117 - transmembrane protein 117 protein-coding 257-106 chr14 53130275 53130503 + 2 NA intron (NM_030637, intron 1 of 11) HERVH-int|LTR|ERV1 22934 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 161-20 chr12 14178523 14178636 + 2 NA Intergenic L1MEc|LINE|L1 -187053 NM_018179 55729 Hs.504856 NM_018179 ENSG00000171681 ATF7IP AM|ATF-IP|MCAF|MCAF1|p621 activating transcription factor 7 interacting protein protein-coding 374-20 chr1 198023390 198023733 + 2 NA Intergenic Intergenic 106189 NM_020204 56956 Hs.442578 NM_020204 ENSG00000143355 LHX9 - LIM homeobox 9 protein-coding 347-483 chr7 122925558 122925872 + 2 NA Intergenic Intergenic -38956 NM_001009571 93664 Hs.649459 NM_017954 ENSG00000081803 CADPS2 CAPS2 calcium dependent secretion activator 2 protein-coding 118-35 chr3 89895457 89895520 + 2 NA Intergenic Intergenic 787867 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 394-178 chr2 116193416 116193661 + 2 NA Intergenic THE1D|LTR|ERVL-MaLR 849723 NM_001321913 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 151-9 chr1 234565637 234565762 + 2 NA Intergenic Intergenic -33920 NR_038426 100506795 Hs.448989 NR_038426 ENSG00000231768 LINC01354 - long intergenic non-protein coding RNA 1354 ncRNA 302-390 chr6 120238154 120238441 + 2 NA Intergenic Intergenic 223118 NR_036098 100422951 NR_036098 ENSG00000265725 MIR3144 mir-3144 microRNA 3144 ncRNA 496-25 chr1 237596476 237596849 + 2 NA intron (NM_001035, intron 34 of 104) L1MA6|LINE|L1 125543 NR_039626 100616141 NR_039626 ENSG00000266262 MIR4428 - microRNA 4428 ncRNA 235-200 chr20 39816704 39816888 + 2 NA Intergenic L1ME3|LINE|L1 -187665 NR_109936 100505663 Hs.559348 NR_109936 ENSG00000237767 LINC01370 HI-LNC25|HILNC25 long intergenic non-protein coding RNA 1370 ncRNA 276-141 chr14 43010122 43010273 + 2 NA Intergenic Intergenic 1403341 NM_152447 145581 Hs.136893 NM_152447 ENSG00000165379 LRFN5 C14orf146|FIGLER8|SALM5 leucine rich repeat and fibronectin type III domain containing 5 protein-coding 294-24 chr1 227727362 227727647 + 2 NA promoter-TSS (NM_001323933) promoter-TSS (NM_001323933) -664 NM_001323933 116841 Hs.325081 NM_053052 ENSG00000143740 SNAP47 C1orf142|ESFI5812|HEL-S-290|HEL170|SNAP-47|SVAP1 synaptosome associated protein 47 protein-coding 195-191 chr5 31915602 31915793 + 2 NA intron (NM_178140, intron 2 of 24) intron (NM_178140, intron 2 of 24) 20462 NR_036241 100422874 NR_036241 ENSG00000266243 MIR4279 - microRNA 4279 ncRNA 588-36 chr14 47265743 47266120 + 2 NA intron (NM_001113498, intron 2 of 16) intron (NM_001113498, intron 2 of 16) 77315 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 352-346 chr4 16391071 16391308 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 164526 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 215-141 chr2 47367692 47367835 + 2 NA Intergenic Intergenic -1385 NM_002354 4072 Hs.542050 NM_002354 ENSG00000119888 EPCAM DIAR5|EGP-2|EGP314|EGP40|ESA|HNPCC8|KS1/4|KSA|M4S1|MIC18|MK-1|TACSTD1|TROP1 epithelial cell adhesion molecule protein-coding 660-15 chr11 59954998 59955435 + 2 NA intron (NR_130719, intron 3 of 8) intron (NR_130719, intron 3 of 8) 12337 NR_130719 255649 Hs.722773 NR_130719 OOSP1 - oocyte secreted protein 1 pseudo 189-149 chr4 96439630 96439773 + 2 NA intron (NR_147149, intron 1 of 3) intron (NR_147149, intron 1 of 3) 128998 NR_147149 105377338 NR_147149 LINC02267 - long intergenic non-protein coding RNA 2267 ncRNA 325-34 chr1 202322166 202322338 + 2 NA Intergenic Intergenic 19684 NM_014176 29089 Hs.5199 NM_014176 ENSG00000077152 UBE2T FANCT|HSPC150|PIG50 ubiquitin conjugating enzyme E2 T protein-coding 155-22 chr10 60313957 60314046 + 2 NA intron (NM_001204403, intron 2 of 43) L2a|LINE|L2 75874 NM_001320874 288 Hs.499725 NM_001149 ENSG00000151150 ANK3 ANKYRIN-G|MRT37 ankyrin 3 protein-coding 326-219 chr19 29167631 29167819 + 2 NA Intergenic L1ME2|LINE|L1 45426 NM_006003 7386 Hs.743307 NM_006003 ENSG00000169021 UQCRFS1 RIP1|RIS1|RISP|UQCR5 ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1 protein-coding 224-209 chr3 127665087 127665242 + 2 NA intron (NM_015720, intron 4 of 7) L1MC4|LINE|L1 -7774 NR_033429 80325 Hs.107812 NM_032548 ENSG00000114626 ABTB1 BPOZ|BTB3|BTBD21|EF1ABP|PP2259 ankyrin repeat and BTB domain containing 1 protein-coding 244-341 chr7 25114048 25114251 + 2 NA Intergenic AluJr4|SINE|Alu 11212 NM_018947 54205 Hs.437060 NM_018947 ENSG00000172115 CYCS CYC|HCS|THC4 cytochrome c, somatic protein-coding 695-44 chr19 30869887 30870329 + 2 NA Intergenic Intergenic -297402 NR_147209 107985312 Hs.211053 NR_147209 ENSG00000267777 LINC01791 - long intergenic non-protein coding RNA 1791 ncRNA 507-204 chr5 107357769 107358138 + 2 NA Intergenic MER91A|DNA|hAT-Tip100 312984 NM_001962 1946 Hs.288741 NM_001962 ENSG00000184349 EFNA5 AF1|EFL5|EPLG7|GLC1M|LERK7|RAGS ephrin A5 protein-coding 175-88 chr2 193420241 193420351 + 2 NA Intergenic L1ME1|LINE|L1 670451 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 178-95 chr4 46270623 46270757 + 2 NA intron (NM_001114175, intron 7 of 8) intron (NM_001114175, intron 7 of 8) 118689 NM_001114175 2555 Hs.48372 NM_000807 ENSG00000151834 GABRA2 - gamma-aminobutyric acid type A receptor alpha2 subunit protein-coding 276-220 chr2 33430648 33430889 + 2 NA Intergenic L3|LINE|CR1 -5580 NM_001349978 25780 Hs.143674 NM_015376 ENSG00000152689 RASGRP3 GRP3 RAS guanyl releasing protein 3 protein-coding 357-473 chr9 17670510 17670788 + 2 NA intron (NM_003026, intron 1 of 8) intron (NM_003026, intron 1 of 8) 91583 NM_003026 6456 Hs.75149 NM_003026 ENSG00000107295 SH3GL2 CNSA2|EEN-B1|SH3D2A|SH3P4 SH3 domain containing GRB2 like 2, endophilin A1 protein-coding 533-45 chr13 73100309 73100716 + 2 NA Intergenic Intergenic 41507 NM_001730 688 Hs.508234 NM_001730 ENSG00000102554 KLF5 BTEB2|CKLF|IKLF Kruppel like factor 5 protein-coding 219-321 chr6 160215577 160215744 + 2 NA Intergenic Intergenic 43161 NM_003058 6582 Hs.436385 NM_003058 ENSG00000112499 SLC22A2 OCT2 solute carrier family 22 member 2 protein-coding 553-80 chr16 78936954 78937422 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 663549 NM_005360 4094 Hs.134859 NM_005360 ENSG00000178573 MAF AYGRP|CCA4|CTRCT21|c-MAF MAF bZIP transcription factor protein-coding 562-18 chr10 22628741 22629095 + 2 NA intron (NM_005028, intron 1 of 9) MER4B|LTR|ERV1 85190 NM_001330062 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 343-582 chr9 88434466 88434754 + 2 NA intron (NM_006717, intron 2 of 5) L1MC5a|LINE|L1 46166 NM_006717 10927 Hs.146804 NM_006717 ENSG00000106723 SPIN1 SPIN|TDRD24 spindlin 1 protein-coding 298-40 chr10 39153211 39153423 + 2 NA Intergenic ALR/Alpha|Satellite|centr 456721 NR_045000 399746 Hs.742607 NR_045000 ACTR3BP5 FKSG74 ACTR3B pseudogene 5 pseudo 553-214 chr7 48761045 48761463 + 2 NA Intergenic Intergenic -163293 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 264-97 chr12 79719656 79719813 + 2 NA Intergenic Intergenic -28637 NM_001354733 5074 Hs.643130 NM_002583 ENSG00000177425 PAWR PAR4|Par-4 pro-apoptotic WT1 regulator protein-coding 285-70 chr11 93570958 93571200 + 2 NA Intergenic Intergenic -27688 NM_020179 56935 Hs.438064 NM_020179 ENSG00000166002 SMCO4 C11orf75|FN5 single-pass membrane protein with coiled-coil domains 4 protein-coding 229-137 chr16 69307942 69308158 + 2 NA 3' UTR (NM_006750, exon 7 of 7) 3' UTR (NM_006750, exon 7 of 7) -3300 NM_013245 27183 Hs.128420 NM_013245 ENSG00000132612 VPS4A SKD1|SKD1A|SKD2|VPS4|VPS4-1 vacuolar protein sorting 4 homolog A protein-coding 497-268 chr7 96765040 96765446 + 2 NA Intergenic Intergenic -55352 NM_006304 7979 Hs.489201 NM_006304 ENSG00000127922 SEM1 C7orf76|DSS1|ECD|SHFD1|SHFM1|SHSF1|Shfdg1 SEM1 26S proteasome complex subunit protein-coding 151-58 chr3 161825873 161825997 + 2 NA Intergenic MER33|DNA|hAT-Charlie 329127 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 399-146 chr2 72356181 72356477 + 2 NA intron (NR_135774, intron 17 of 19) intron (NR_135774, intron 17 of 19) -208467 NM_019885 56603 Hs.91546 NM_019885 ENSG00000003137 CYP26B1 CYP26A2|P450RAI-2|P450RAI2|RHFCA cytochrome P450 family 26 subfamily B member 1 protein-coding 839-35 chr3 121684692 121685355 + 2 NA intron (NM_001256486, intron 14 of 21) HAL1|LINE|L1 -24120 NM_005335 3059 Hs.14601 NM_005335 ENSG00000180353 HCLS1 CTTNL|HS1|lckBP1|p75 hematopoietic cell-specific Lyn substrate 1 protein-coding 336-224 chr18 23123715 23124018 + 2 NA Intergenic Intergenic -10698 NR_023359 91768 Hs.11108 NM_138375 ENSG00000134508 CABLES1 CABL1|CABLES|HsT2563|IK3-1 Cdk5 and Abl enzyme substrate 1 protein-coding 209-272 chr6 63208369 63208491 + 2 NA Intergenic Intergenic 111547 NM_001143940 51557 Hs.149585 NM_016571 ENSG00000146166 LGSN GLULD1|LGS lengsin, lens protein with glutamine synthetase domain protein-coding 364-412 chr7 45046602 45046879 + 2 NA intron (NM_001029835, intron 2 of 9) L1MD1|LINE|L1 19106 NM_001029835 83605 Hs.148272 NM_031443 ENSG00000136280 CCM2 C7orf22|OSM|PP10187 CCM2 scaffold protein protein-coding 414-193 chr21 28183832 28184058 + 2 NA intron (NR_126012, intron 3 of 5) MLT1D|LTR|ERVL-MaLR 44722 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 879-30 chr8 97847408 97848085 + 2 NA intron (NM_018407, intron 6 of 6) intron (NM_018407, intron 6 of 6) -21318 NM_002380 4147 Hs.189445 NM_002380 ENSG00000132561 MATN2 - matrilin 2 protein-coding 235-10 chr1 85545192 85545399 + 2 NA intron (NM_001134445, intron 1 of 6) intron (NM_001134445, intron 1 of 6) 32905 NM_001134445 23576 Hs.713411 NM_012137 ENSG00000153904 DDAH1 DDAH|DDAH-1|DDAHI|HEL-S-16 dimethylarginine dimethylaminohydrolase 1 protein-coding 212-96 chr14 49128868 49128984 + 2 NA Intergenic L1PA7|LINE|L1 457454 NM_001030001 6235 Hs.156367 NM_001032 ENSG00000213741 RPS29 DBA13|S29|uS14 ribosomal protein S29 protein-coding 285-45 chr10 94029229 94029448 + 2 NA intron (NM_001288989, intron 1 of 32) intron (NM_001288989, intron 1 of 32) 35407 NM_016341 51196 Hs.655033 NM_016341 ENSG00000138193 PLCE1 NPHS3|PLCE|PPLC phospholipase C epsilon 1 protein-coding 148-92 chr8 102857236 102857310 + 2 NA intron (NM_001363083, intron 2 of 12) intron (NM_001363083, intron 2 of 12) 6890 NM_148174 51582 Hs.459106 NM_015878 ENSG00000155096 AZIN1 AZI|AZI1|AZIA1|OAZI|OAZIN|ODC1L antizyme inhibitor 1 protein-coding 364-25 chr1 162089365 162089561 + 2 NA intron (NM_014697, intron 1 of 9) HAL1M8|LINE|L1 19772 NM_001164757 9722 Hs.731942 NM_014697 ENSG00000198929 NOS1AP 6330408P19Rik|CAPON nitric oxide synthase 1 adaptor protein protein-coding 302-366 chr5 164816820 164817055 + 2 NA Intergenic L1ME3B|LINE|L1 346658 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 290-253 chr21 15739227 15739426 + 2 NA intron (NM_001352560, intron 1 of 23) intron (NM_001352560, intron 1 of 23) 9344 NM_001352561 29761 Hs.743994 NM_013396 ENSG00000155313 USP25 USP21 ubiquitin specific peptidase 25 protein-coding 308-271 chr20 55089240 55089459 + 2 NA Intergenic Intergenic -333694 NR_110629 102723578 Hs.446269 NR_110629 ENSG00000235166 LINC01440 - long intergenic non-protein coding RNA 1440 ncRNA 406-7 chr1 60720067 60720293 + 2 NA intron (NR_110628, intron 4 of 5) MIRc|SINE|MIR -97495 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 146-24 chr13 107429410 107429518 + 2 NA intron (NM_001080396, intron 1 of 2) intron (NM_001080396, intron 1 of 2) 101784 NR_031671 100302286 NR_031671 ENSG00000221650 MIR1267 MIRN1267|hsa-mir-1267 microRNA 1267 ncRNA 330-145 chr13 110447068 110447317 + 2 NA intron (NM_001846, intron 18 of 47) intron (NM_001846, intron 18 of 47) 16095 NM_001267044 100129836 Hs.640035 NM_001267044 COL4A2-AS2 - COL4A2 antisense 2 protein-coding 306-408 chr5 125908474 125908758 + 2 NA Intergenic L1MA3|LINE|L1 -270961 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 252-138 chr16 8297862 8298063 + 2 NA Intergenic Intergenic 291876 NR_110736 283953 Hs.150849 NM_001146336 ENSG00000232258 TMEM114 - transmembrane protein 114 protein-coding 149-37 chr16 13648521 13648638 + 2 NA Intergenic Intergenic -271578 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 309-123 chr13 24134025 24134248 + 2 NA intron (NM_001286792, intron 3 of 14) intron (NM_001286792, intron 3 of 14) -26584 NM_153023 221178 Hs.434298 NM_153023 ENSG00000182957 SPATA13 ARHGEF29|ASEF2 spermatogenesis associated 13 protein-coding 564-18 chr10 61598099 61598497 + 2 NA Intergenic Intergenic -64631 NM_001366908 219621 Hs.673160 NM_173554 ENSG00000183346 CABCOCO1 C10orf107 ciliary associated calcium binding coiled-coil 1 protein-coding 327-4 chr1 42239898 42240156 + 2 NA intron (NM_001198850, intron 4 of 12) intron (NM_001198850, intron 4 of 12) -75282 NM_033553 2980 Hs.778 NM_033553 ENSG00000197273 GUCA2A GCAP-I|GUCA2|STARA guanylate cyclase activator 2A protein-coding 629-92 chr4 134949218 134949655 + 2 NA Intergenic L1MC1|LINE|L1 174123 NR_147187 105377439 Hs.570727 NR_147187 LINC02485 - long intergenic non-protein coding RNA 2485 ncRNA 617-49 chr16 80047979 80048374 + 2 NA Intergenic L1PA15|LINE|L1 252927 NR_104661 101928248 Hs.659802 NR_104660 ENSG00000260876 LINC01229 - long intergenic non-protein coding RNA 1229 ncRNA 255-168 chr18 22665952 22666193 + 2 NA Intergenic L1PA17|LINE|L1 120765 NR_110782 101927571 Hs.335020 NR_110782 ENSG00000266850 LOC101927571 - uncharacterized LOC101927571 ncRNA 302-350 chr5 89638383 89638593 + 2 NA Intergenic Intergenic 378232 NR_037433 100500825 NR_037433 ENSG00000264342 MIR3660 mir-3660 microRNA 3660 ncRNA 546-226 chr7 83109833 83110233 + 2 NA intron (NM_033026, intron 3 of 24) MIR|SINE|MIR 52851 NM_033026 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 117-42 chr7 126972964 126973066 + 2 NA intron (NM_001371085, intron 3 of 10) intron (NM_001371085, intron 3 of 10) 85169 NR_030323 693177 NR_030323 ENSG00000207692 MIR592 MIRN592|hsa-mir-592|mir-592 microRNA 592 ncRNA 275-43 chr10 58227231 58227395 + 2 NA intron (NM_152230, intron 2 of 5) LTR37A|LTR|ERV1 40581 NM_152230 253430 Hs.30280 NM_152230 ENSG00000151151 IPMK - inositol polyphosphate multikinase protein-coding 142-49 chr21 28211744 28211820 + 2 NA intron (NR_126012, intron 3 of 5) intron (NR_126012, intron 3 of 5) 16885 NR_126012 101927973 Hs.570414 NR_126012 ENSG00000236532 LINC01695 - long intergenic non-protein coding RNA 1695 ncRNA 203-14 chr1 183159688 183159847 + 2 NA Intergenic MIRb|SINE|MIR -18497 NR_149048 110841583 Hs.604063 NR_149048 ENSG00000224468 LAMC1-AS1 lnc-LAMC2-1:1 LAMC1 antisense RNA 1 ncRNA 757-57 chr7 61832866 61833483 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1470882 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 529-81 chr16 82734984 82735325 + 2 NA intron (NM_001220488, intron 2 of 14) intron (NM_001220488, intron 2 of 14) -38165 NR_110938 101928446 Hs.684007 NR_110938 ENSG00000260862 LOC101928446 - uncharacterized LOC101928446 ncRNA 553-194 chr5 132849709 132850062 + 2 NA Intergenic Intergenic 15476 NM_005260 2661 Hs.25022 NM_005260 ENSG00000164404 GDF9 POF14 growth differentiation factor 9 protein-coding 546-8 chr1 172032640 172032997 + 2 NA intron (NM_001278252, intron 5 of 14) intron (NM_001278252, intron 5 of 14) -105990 NR_036066 100422882 NR_036066 ENSG00000283152 MIR3120 mir-3120 microRNA 3120 ncRNA 316-325 chr20 54738645 54738814 + 2 NA Intergenic Intergenic 263136 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 153-52 chr2 68214168 68214294 + 2 NA intron (NM_000945, intron 2 of 5) L1PA15|LINE|L1 38301 NM_000945 5534 Hs.280604 NM_000945 ENSG00000221823 PPP3R1 CALNB1|CNB|CNB1 protein phosphatase 3 regulatory subunit B, alpha protein-coding 270-420 chr9 12200114 12200300 + 2 NA Intergenic Intergenic -493178 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 226-109 chr16 5357618 5357766 + 2 NA Intergenic MLT1O|LTR|ERVL-MaLR 258558 NR_110902 101926950 Hs.613285 NR_110902 ENSG00000260338 LINC01570 - long intergenic non-protein coding RNA 1570 ncRNA 448-137 chr20 54804454 54804794 + 2 NA Intergenic LTR16A2|LTR|ERVL 329031 NM_177959 55816 Hs.473133 NM_018431 ENSG00000101134 DOK5 C20orf180|IRS-6|IRS6 docking protein 5 protein-coding 324-357 chr3 101445181 101445437 + 2 NA intron (NM_020654, intron 4 of 23) L1M2|LINE|L1 67903 NM_001077203 57337 Hs.529551 NM_020654 ENSG00000138468 SENP7 - SUMO specific peptidase 7 protein-coding 694-122 chr7 54402004 54402459 + 2 NA Intergenic Intergenic 71534 NR_120516 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 164-11 chr10 9496837 9496975 + 2 NA Intergenic Intergenic -201313 NR_120635 101928272 Hs.650697 NR_120635 LOC101928272 - uncharacterized LOC101928272 ncRNA 187-126 chr4 17410724 17410880 + 2 NA Intergenic L1MB3|LINE|L1 -89920 NR_145770 109616994 NR_145770 ENSG00000206780 SNORA75B - small nucleolar RNA, H/ACA box 75B snoRNA 244-249 chr3 196926977 196927184 + 2 NA intron (NM_152699, intron 7 of 9) intron (NM_152699, intron 7 of 9) -12797 NR_046630 100874001 Hs.591671 NR_046630 NCBP2-AS1 - NCBP2 antisense RNA 1 ncRNA 318-381 chr4 16337860 16338126 + 2 NA Intergenic Intergenic 111330 NR_027697 202020 Hs.445315 NM_152684 ENSG00000263327 TAPT1-AS1 - TAPT1 antisense RNA 1 (head to head) ncRNA 596-147 chr7 26994399 26994904 + 2 NA Intergenic L2c|LINE|L2 101349 NM_153620 3198 Hs.67397 NM_005522 ENSG00000105991 HOXA1 BSAS|HOX1|HOX1F homeobox A1 protein-coding 262-52 chr10 66546930 66547163 + 2 NA intron (NM_001127384, intron 10 of 17) MLT1I|LTR|ERVL-MaLR -378990 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 365-406 chr8 116121777 116122080 + 2 NA intron (NR_046215, intron 6 of 13) intron (NR_046215, intron 6 of 13) 203131 NR_046215 100859921 Hs.552281 NR_046215 ENSG00000249917 LINC00536 - long intergenic non-protein coding RNA 536 ncRNA 250-339 chr5 43884214 43884404 + 2 NA Intergenic Intergenic -281079 NR_073113 100652772 Hs.482043 NR_073113 NNT-AS1 - NNT antisense RNA 1 ncRNA 346-214 chr19 21077381 21077575 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -4669 NR_117088 148206 Hs.729186 NM_182515 ENSG00000160352 ZNF714 - zinc finger protein 714 protein-coding 249-112 chr14 40462994 40463183 + 2 NA Intergenic L1ME3|LINE|L1 -491623 NR_109757 644919 Hs.434414 NR_109757 LINC02315 - long intergenic non-protein coding RNA 2315 ncRNA 255-76 chr12 46636491 46636711 + 2 NA intron (NR_125377, intron 3 of 3) L1MC1|LINE|L1 189396 NM_001143824 55089 Hs.446077 NM_018018 ENSG00000139209 SLC38A4 ATA3|NAT3|PAAT|SNAT4 solute carrier family 38 member 4 protein-coding 641-21 chr11 101633828 101634216 + 2 NA Intergenic Intergenic -50015 NM_004621 7225 Hs.159003 NM_004621 ENSG00000137672 TRPC6 FSGS2|TRP6 transient receptor potential cation channel subfamily C member 6 protein-coding 339-80 chr10 124302898 124303113 + 2 NA Intergenic Intergenic 115918 NM_001322970 4942 Hs.523332 NM_000274 ENSG00000065154 OAT GACR|HOGA|OATASE|OKT ornithine aminotransferase protein-coding 413-47 chr11 13711707 13711992 + 2 NA intron (NM_032228, intron 6 of 11) intron (NM_032228, intron 6 of 11) 43181 NM_032228 84188 Hs.501991 NM_032228 ENSG00000197601 FAR1 MLSTD2|PFCRD|SDR10E1 fatty acyl-CoA reductase 1 protein-coding 343-320 chr22 28042612 28042932 + 2 NA intron (NM_001145418, intron 12 of 22) intron (NM_001145418, intron 12 of 22) -122160 NR_036169 100423034 NR_036169 ENSG00000264073 MIR3199-1 mir-3199-1 microRNA 3199-1 ncRNA 239-175 chr2 80006637 80006814 + 2 NA intron (NM_001282598, intron 7 of 17) intron (NM_001282598, intron 7 of 17) -140142 NR_107047 102465877 NR_107047 ENSG00000276917 MIR8080 hsa-mir-8080 microRNA 8080 ncRNA 449-277 chr8 110019552 110019934 + 2 NA Intergenic LTR37A|LTR|ERV1 -43972 NM_014379 27012 Hs.13285 NM_014379 ENSG00000164794 KCNV1 HNKA|KCNB3|KV2.3|KV8.1 potassium voltage-gated channel modifier subfamily V member 1 protein-coding 301-494 chrX 45732908 45733101 + 2 NA Intergenic L1MA7|LINE|L1 1916 NR_102268 392452 Hs.745266 NR_102268 LOC392452 - mitochondrial fission factor pseudogene pseudo 344-315 chr3 80521469 80521683 + 2 NA Intergenic Intergenic -243321 NR_147144 105377175 Hs.180696 NR_147143 ENSG00000242781 LINC02050 - long intergenic non-protein coding RNA 2050 ncRNA 532-36 chr11 97297902 97298279 + 2 NA Intergenic (TA)n|Simple_repeat|Simple_repeat 789665 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 604-8 chr1 217802286 217802841 + 2 NA intron (NM_138796, intron 9 of 10) MLT1B|LTR|ERVL-MaLR -17443 NR_125784 103752555 Hs.602803 NR_125784 ENSG00000234070 SPATA17-AS1 - SPATA17 antisense RNA 1 ncRNA 316-542 chr8 57073612 57073902 + 2 NA Intergenic Intergenic -79890 NM_017813 54928 Hs.438689 NM_017813 ENSG00000104331 IMPAD1 GPAPP|IMP 3|IMP-3|IMPA3 inositol monophosphatase domain containing 1 protein-coding 383-14 chr1 101807049 101807311 + 2 NA intron (NM_001288821, intron 4 of 5) L1PA16|LINE|L1 39900 NR_110212 118427 Hs.484475 NM_058170 ENSG00000118733 OLFM3 NOE3|NOELIN3|OPTIMEDIN olfactomedin 3 protein-coding 361-302 chr3 126693173 126693438 + 2 NA Intergenic MER41D|LTR|ERV1 -10935 NM_001320610 84303 Hs.518119 NM_032343 ENSG00000159685 CHCHD6 CHCM1|MICOS25|Mic25|PPP1R23 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 139 chr1 68848367 68848453 + 2 NA Intergenic Intergenic -207488 NR_146608 105378785 Hs.127911 NR_146608 ENSG00000223883 LINC01707 - long intergenic non-protein coding RNA 1707 ncRNA 231-253 chr4 58397513 58397700 + 2 NA Intergenic L1MA5|LINE|L1 138722 NR_133943 105377671 Hs.225045 NR_133943 ENSG00000250340 LINC02494 - long intergenic non-protein coding RNA 2494 ncRNA 304-452 chr6 6952135 6952302 + 2 NA Intergenic Intergenic -155525 NM_001168344 6239 Hs.298248 NM_002955 ENSG00000124782 RREB1 FINB|HNT|LZ321|RREB-1|Zep-1 ras responsive element binding protein 1 protein-coding 306-553 chr9 107358246 107358475 + 2 NA Intergenic MIR|SINE|MIR 73591 NM_001244713 5887 Hs.521640 NM_002874 ENSG00000119318 RAD23B HHR23B|HR23B|P58 RAD23 homolog B, nucleotide excision repair protein protein-coding 141-33 chr17 61455073 61455166 + 2 NA intron (NM_001321120, intron 1 of 8) intron (NM_001321120, intron 1 of 8) -1369 NM_018488 9496 Hs.143907 NM_018488 ENSG00000121075 TBX4 ICPPS|SPS T-box transcription factor 4 protein-coding 288-345 chr5 141146812 141146984 + 2 NA Intergenic L1MDa|LINE|L1 -3124 NM_018939 56130 Hs.283085 NM_018939 ENSG00000113211 PCDHB6 PCDH-BETA6 protocadherin beta 6 protein-coding 250-75 chr11 96631928 96632121 + 2 NA Intergenic PRIMA4-int|LTR|ERV1 123599 NR_135097 105369443 Hs.599377 NR_135097 ENSG00000256684 LINC02737 - long intergenic non-protein coding RNA 2737 ncRNA 718-37 chr18 29467805 29468328 + 2 NA Intergenic L1MD1|LINE|L1 -830844 NR_031684 100302131 NR_031684 ENSG00000283218 MIR302F MIRN302F|hsa-mir-302f microRNA 302f ncRNA 566-142 chr4 59004087 59004607 + 2 NA intron (NR_133941, intron 1 of 2) L2|LINE|L2 -9226 NR_133942 105377247 Hs.298228 NR_133941 ENSG00000251266 LINC02429 - long intergenic non-protein coding RNA 2429 ncRNA 605-14 chr10 80556620 80557177 + 2 NA intron (NM_001145719, intron 1 of 6) L1M4|LINE|L1 16079 NM_001145719 387694 Hs.147643 NM_207372 ENSG00000178217 SH2D4B - SH2 domain containing 4B protein-coding 269-96 chr12 102497195 102497398 + 2 NA Intergenic Intergenic -16733 NM_001111285 3479 Hs.160562 NM_000618 ENSG00000017427 IGF1 IGF|IGF-I|IGFI|MGF insulin like growth factor 1 protein-coding 254-10 chr1 79463173 79463420 + 2 NA Intergenic Intergenic -456566 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 567-168 chr7 52282708 52283125 + 2 NA Intergenic Intergenic -752717 NM_182595 285877 Hs.381970 NM_182595 ENSG00000221900 POM121L12 - POM121 transmembrane nucleoporin like 12 protein-coding 385-113 chr15 59558554 59558856 + 2 NA Intergenic Intergenic -53078 NM_004751 9245 Hs.194710 NM_004751 ENSG00000140297 GCNT3 C2/4GnT|C24GNT|C2GNT2|C2GNTM|GNTM glucosaminyl (N-acetyl) transferase 3, mucin type protein-coding 259-230 chr20 35723058 35723284 + 2 NA intron (NR_040722, intron 9 of 17) Charlie10b|DNA|hAT-Charlie 19089 NM_001323424 9584 Hs.282901 NM_004902 ENSG00000131051 RBM39 CAPER|CAPERalpha|FSAP59|HCC1|RNPC2 RNA binding motif protein 39 protein-coding 363-332 chr4 78009756 78009989 + 2 NA Intergenic HAL1ME|LINE|L1 -47451 NM_025074 80144 Hs.369448 NM_020875 ENSG00000138759 FRAS1 FRASRS1 Fraser extracellular matrix complex subunit 1 protein-coding 477-12 chr1 88592964 88593367 + 2 NA intron (NR_110682, intron 1 of 3) L1MA3|LINE|L1 -90979 NM_001320707 5586 Hs.440833 NM_006256 ENSG00000065243 PKN2 PAK2|PRK2|PRKCL2|PRO2042|Pak-2|STK7 protein kinase N2 protein-coding 214-343 chr8 135874380 135874511 + 2 NA Intergenic HERV16-int|LTR|ERVL 416989 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 322-484 chr7 39045241 39045498 + 2 NA intron (NM_007252, intron 2 of 10) intron (NM_007252, intron 2 of 10) -31802 NR_138047 100689074 Hs.675876 NR_138047 POU6F2-AS2 - POU6F2 antisense RNA 2 ncRNA 117-29 chr4 21304871 21304970 + 2 NA intron (NM_147182, intron 2 of 8) intron (NM_147182, intron 2 of 8) -1014 NM_147183 80333 Hs.655705 NM_025221 ENSG00000185774 KCNIP4 CALP|KCHIP4 potassium voltage-gated channel interacting protein 4 protein-coding 280-393 chr7 108608226 108608380 + 2 NA Intergenic MLT1B|LTR|ERVL-MaLR 38429 NM_012328 4189 Hs.732494 NM_012328 ENSG00000128590 DNAJB9 ERdj4|MDG-1|MDG1|MST049|MSTP049 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 223-173 chr2 198795583 198795778 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -420583 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 363-135 chr14 52345590 52345809 + 2 NA Intergenic L1M5|LINE|L1 31387 NM_000956 5732 Hs.2090 NM_000956 ENSG00000125384 PTGER2 EP2 prostaglandin E receptor 2 protein-coding 315-50 chr10 44337183 44337473 + 2 NA Intergenic Intergenic 44578 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 213-120 chr18 5712723 5712929 + 2 NA Intergenic Intergenic -35993 NR_038839 645355 Hs.632356 NR_038839 ENSG00000261738 MIR3976HG LINC01469 MIR3976 host gene ncRNA 229-212 chr2 186088300 186088516 + 2 NA Intergenic Intergenic -2091 NR_110218 101927217 Hs.130011 NR_110218 ENSG00000237877 LINC01473 - long intergenic non-protein coding RNA 1473 ncRNA 332-480 chr7 39273660 39273948 + 2 NA intron (NM_001370959, intron 4 of 9) intron (NM_001370959, intron 4 of 9) 55330 NR_145730 109616963 NR_145730 ENSG00000206947 SNORA20B - small nucleolar RNA, H/ACA box 20B snoRNA 241-186 chr2 67219236 67219409 + 2 NA intron (NR_110568, intron 1 of 3) intron (NR_110568, intron 1 of 3) -4003 NR_038844 644838 Hs.145561 NR_038844 ENSG00000236780 LINC01829 - long intergenic non-protein coding RNA 1829 ncRNA 347-213 chr2 56718313 56718512 + 2 NA Intergenic MER58C|DNA|hAT-Charlie -532642 NR_125368 100129434 Hs.580330 NR_125368 LOC100129434 - uncharacterized LOC100129434 ncRNA 163-2 chr1 64403271 64403405 + 2 NA Intergenic Intergenic -66791 NM_020925 57685 Hs.443891 NM_020925 ENSG00000158966 CACHD1 - cache domain containing 1 protein-coding 282-323 chr4 27161852 27162050 + 2 NA Intergenic Intergenic -55528 NR_125921 101929199 Hs.570815 NR_125921 ENSG00000249699 LINC02261 - long intergenic non-protein coding RNA 2261 ncRNA 282-371 chr5 42677441 42677653 + 2 NA intron (NM_001242403, intron 3 of 9) intron (NM_001242403, intron 3 of 9) -79271 NM_001134848 100129792 Hs.745017 NM_001134848 ENSG00000198865 CCDC152 CH5400 coiled-coil domain containing 152 protein-coding 691-77 chr6 161252870 161253282 + 2 NA intron (NM_020133, intron 1 of 8) AluSx1|SINE|Alu 20985 NM_020133 56895 Hs.353175 NM_020133 ENSG00000026652 AGPAT4 1-AGPAT4|LPAAT-delta|dJ473J16.2 1-acylglycerol-3-phosphate O-acyltransferase 4 protein-coding 689 chr1 36783633 36784122 + 2 NA Intergenic Intergenic 250638 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 443-182 chr20 52213590 52213925 + 2 NA Intergenic MLT1D|LTR|ERVL-MaLR -21772 NM_199427 55734 Hs.473082 NM_018197 ENSG00000020256 ZFP64 ZNF338 ZFP64 zinc finger protein protein-coding 198-77 chr16 9572588 9572700 + 2 NA Intergenic MIR3|SINE|MIR -117139 NR_126349 104266959 Hs.578888 NR_126349 ENSG00000261075 LINC01195 - long intergenic non-protein coding RNA 1195 ncRNA 493-100 chr16 54444869 54445292 + 2 NA Intergenic LTR40b|LTR|ERVL -74381 NR_134923 100996345 Hs.112680 NR_134922 ENSG00000261803 LINC02140 - long intergenic non-protein coding RNA 2140 ncRNA 398-89 chr13 78524336 78524568 + 2 NA intron (NR_047001, intron 3 of 5) intron (NR_047001, intron 3 of 5) -71670 NR_158457 780529 Hs.587755 NR_158457 LOC780529 - uncharacterized LOC780529 ncRNA 297-390 chr5 171010529 171010779 + 2 NA intron (NM_022897, intron 14 of 27) L1MEb|LINE|L1 148636 NM_022897 64901 Hs.410810 NM_022897 ENSG00000204764 RANBP17 - RAN binding protein 17 protein-coding 273-463 chr8 135891730 135891917 + 2 NA Intergenic L1M4a1|LINE|L1 434367 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 342-261 chr2 156923270 156923519 + 2 NA Intergenic THE1B-int|LTR|ERVL-MaLR -334311 NM_014568 11227 Hs.269027 NM_014568 ENSG00000136542 GALNT5 GALNAC-T5|GALNACT5 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 247-393 chr7 145132387 145132563 + 2 NA Intergenic L1MC4|LINE|L1 -296422 NM_001350894 27010 Hs.660232 NM_022445 ENSG00000196511 TPK1 HTPK1|PP20|THMD5 thiamin pyrophosphokinase 1 protein-coding 285-330 chr5 26125734 26125962 + 2 NA Intergenic Intergenic 912738 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 176-141 chr8 82592508 82592663 + 2 NA Intergenic Intergenic -319519 NR_134295 101927141 Hs.128557 NR_134295 ENSG00000254394 LOC101927141 - uncharacterized LOC101927141 ncRNA 548-245 chr8 139167335 139167752 + 2 NA Intergenic Intergenic -253502 NM_152888 169044 Hs.117169 NM_152888 ENSG00000169436 COL22A1 - collagen type XXII alpha 1 chain protein-coding 257-380 chr7 36817425 36817675 + 2 NA Intergenic L1MB5|LINE|L1 -93001 NM_001177507 313 Hs.488007 NM_001637 ENSG00000136250 AOAH - acyloxyacyl hydrolase protein-coding 188-35 chr12 19751116 19751259 + 2 NA Intergenic MER34A|LTR|ERV1 -263498 NR_040098 100506393 Hs.658356 NR_040098 ENSG00000256287 LINC02398 - long intergenic non-protein coding RNA 2398 ncRNA 717-82 chr8 59673783 59674350 + 2 NA Intergenic Intergenic 554856 NR_149030 100505501 NR_149030 LOC100505501 - uncharacterized LOC100505501 ncRNA 328-43 chr1 239886671 239886884 + 2 NA intron (NM_001347716, intron 7 of 7) CR1-16_AMi|LINE|CR1 13095 NR_046582 100873984 Hs.199475 NR_046582 ENSG00000234601 CHRM3-AS1 - CHRM3 antisense RNA 1 ncRNA 194-58 chr14 62557850 62557976 + 2 NA Intergenic Intergenic -417940 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 382-358 chr6 88199058 88199352 + 2 NA Intergenic Intergenic -31856 NM_001370547 1268 Hs.75110 NM_016083 ENSG00000118432 CNR1 CANN6|CB-R|CB1|CB1A|CB1K5|CB1R|CNR cannabinoid receptor 1 protein-coding 348-472 chr6 139880360 139880614 + 2 NA Intergenic Intergenic 25637 NR_138542 100132735 Hs.62646 NR_038399 ENSG00000231426 FILNC1 - FOXO induced long non-coding RNA 1 ncRNA 237-130 chr16 13458062 13458267 + 2 NA Intergenic Intergenic -461993 NM_005236 2072 Hs.567265 NM_005236 ENSG00000175595 ERCC4 ERCC11|FANCQ|RAD1|XFEPS|XPF ERCC excision repair 4, endonuclease catalytic subunit protein-coding 262-443 chr8 139594060 139594278 + 2 NA Intergenic L2c|LINE|L2 108954 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 511-20 chr10 56762616 56763055 + 2 NA Intergenic LTR27C|LTR|ERV1 -401562 NM_032997 11130 Hs.591363 NM_007057 ENSG00000122952 ZWINT HZwint-1|KNTC2AP|SIP30|ZWINT1 ZW10 interacting kinetochore protein protein-coding 472-169 chr2 132951333 132951701 + 2 NA intron (NM_207481, intron 8 of 17) intron (NM_207481, intron 8 of 17) 35960 NR_135572 101928185 Hs.680114 NR_135572 ENSG00000233729 NCKAP5-AS1 - NCKAP5 antisense RNA 1 ncRNA 312-399 chr5 4405142 4405347 + 2 NA Intergenic Intergenic -368237 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 166-23 chr13 95462050 95462192 + 2 NA intron (NM_182848, intron 1 of 4) intron (NM_182848, intron 1 of 4) 28522 NM_182848 9071 Hs.534377 NM_006984 ENSG00000134873 CLDN10 CPETRL3|HELIX|OSP-L|OSPL claudin 10 protein-coding 266-193 chr2 141624285 141624464 + 2 NA intron (NM_018557, intron 2 of 90) MIR3|SINE|MIR 507327 NM_018557 53353 Hs.656461 NM_018557 ENSG00000168702 LRP1B LRP-1B|LRP-DIT|LRPDIT LDL receptor related protein 1B protein-coding 341-96 chr11 112439764 112440098 + 2 NA Intergenic L1M1|LINE|L1 -42301 NR_120559 101928823 Hs.126118 NR_120559 ENSG00000254968 LINC02763 - long intergenic non-protein coding RNA 2763 ncRNA 324-205 chr16 62468287 62468482 + 2 NA Intergenic L1PREC2|LINE|L1 -431946 NM_001796 1006 Hs.368322 NM_001796 ENSG00000150394 CDH8 Nbla04261 cadherin 8 protein-coding 132-24 chr14 53629166 53629243 + 2 NA Intergenic Intergenic 319280 NR_049843 100847076 NR_049843 ENSG00000266431 MIR5580 - microRNA 5580 ncRNA 230-232 chr3 87314077 87314234 + 2 NA Intergenic MER63A|DNA|hAT-Blackjack -37571 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 237-305 chr5 102501474 102501685 + 2 NA Intergenic Intergenic -2578 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 187-191 chrX 92176685 92176837 + 2 NA intron (NM_001168362, intron 2 of 4) intron (NM_001168362, intron 2 of 4) 341300 NM_032969 27328 Hs.655673 NM_014522 ENSG00000102290 PCDH11X PCDH-X|PCDH-Y|PCDH11|PCDH11Y|PCDH22|PCDHX|PPP1R119 protocadherin 11 X-linked protein-coding 319-558 chr8 137585618 137585867 + 2 NA Intergenic L2a|LINE|L2 -172154 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 429-73 chr12 127719821 127720136 + 2 NA Intergenic AluSz|SINE|Alu -64390 NR_134995 105370068 Hs.524845 NR_134995 LOC105370068 - uncharacterized LOC105370068 ncRNA 398-76 chr12 45450227 45450491 + 2 NA Intergenic L1MEg|LINE|L1 157669 NM_001142678 196527 Hs.505339 NM_001025356 ENSG00000177119 ANO6 BDPLT7|SCTS|TMEM16F anoctamin 6 protein-coding 646-85 chr3 34575068 34575460 + 2 NA Intergenic Intergenic 776634 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 163-129 chr9 108098703 108098804 + 2 NA Intergenic L1MEh|LINE|L1 -608984 NM_001314052 9314 Hs.376206 NM_004235 ENSG00000136826 KLF4 EZF|GKLF Kruppel like factor 4 protein-coding 266-139 chr16 61270911 61271071 + 2 NA Intergenic MIRb|SINE|MIR -215225 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 554-178 chr5 109204599 109204986 + 2 NA Intergenic Intergenic 121577 NR_149040 285638 Hs.532104 NR_149040 ENSG00000249476 LOC285638 - uncharacterized LOC285638 ncRNA 132-34 chr18 1819778 1819872 + 2 NA Intergenic L1MC3|LINE|L1 -460196 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 289-405 chr6 10862969 10863127 + 2 NA Intergenic Intergenic 18817 NM_004752 9247 Hs.227098 NM_004752 ENSG00000124827 GCM2 GCMB|HRPT4|hGCMb glial cells missing transcription factor 2 protein-coding 315-361 chr4 177787225 177787450 + 2 NA intron (NR_028342, intron 2 of 5) intron (NR_028342, intron 2 of 5) 58580 NR_028342 285501 Hs.722466 NM_001085490 ENSG00000231171 LINC01098 - long intergenic non-protein coding RNA 1098 ncRNA 485-162 chr20 39404212 39404544 + 2 NA Intergenic Intergenic -179630 NR_027124 339568 Hs.434319 NR_027124 ENSG00000230324 LINC01734 - long intergenic non-protein coding RNA 1734 ncRNA 559-83 chr19 6190922 6191269 + 2 NA intron (NM_030924, intron 14 of 14) intron (NM_030924, intron 14 of 14) 55428 NM_001289178 81616 Hs.465720 NM_030924 ENSG00000130377 ACSBG2 BGR|BRGL|PRTD-NY3|PRTDNY3 acyl-CoA synthetase bubblegum family member 2 protein-coding 331-323 chr21 26489673 26489922 + 2 NA intron (NM_052954, intron 2 of 3) intron (NM_052954, intron 2 of 3) 83489 NM_052954 116159 Hs.37445 NM_052954 ENSG00000166265 CYYR1 C21orf95 cysteine and tyrosine rich 1 protein-coding 568-208 chrX 66248136 66248543 + 2 NA intron (NM_001367241, intron 15 of 18) MER44C|DNA|TcMar-Tigger 80589 NM_001367234 9843 Hs.31720 NM_014799 ENSG00000089472 HEPH CPL hephaestin protein-coding 200-246 chr6 133084270 133084462 + 2 NA Intergenic Intergenic -3714 NR_026969 285735 Hs.407549 NM_001037231 LINC00326 NCRNA00326 long intergenic non-protein coding RNA 326 ncRNA 175-27 chr10 88680401 88680545 + 2 NA Intergenic L1MC5|LINE|L1 16031 NM_004190 8513 Hs.523130 NM_004190 ENSG00000182333 LIPF GL|HGL|HLAL lipase F, gastric type protein-coding 273-158 chr16 57324140 57324293 + 2 NA Intergenic AluY|SINE|Alu -34567 NM_002990 6367 Hs.534347 NM_002990 ENSG00000102962 CCL22 A-152E5.1|ABCD-1|DC/B-CK|MDC|SCYA22|STCP-1 C-C motif chemokine ligand 22 protein-coding 443-28 chr1 235732481 235732770 + 2 NA intron (NM_000081, intron 34 of 52) L1ME4c|LINE|L1 -81871 NM_001098721 2786 Hs.159711 NM_004485 ENSG00000168243 GNG4 - G protein subunit gamma 4 protein-coding 474-131 chr2 34549785 34550227 + 2 NA Intergenic Intergenic -127551 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 672-92 chr5 166867675 166868106 + 2 NA Intergenic MIRb|SINE|MIR 58480 NR_108020 102557615 NR_108020 ENSG00000254130 LINC01947 CTB-7E3.1 long intergenic non-protein coding RNA 1947 ncRNA 409-190 chr22 36905982 36906314 + 2 NA Intergenic Intergenic -7480 NM_000395 1439 Hs.592192 NM_000395 ENSG00000100368 CSF2RB CD131|CDw131|IL3RB|IL5RB|SMDP5|betaGMR colony stimulating factor 2 receptor beta common subunit protein-coding 340-253 chr2 67341153 67341376 + 2 NA Intergenic Intergenic -56069 NM_019002 54465 Hs.353022 NM_019002 ENSG00000143971 ETAA1 ETAA16 ETAA1 activator of ATR kinase protein-coding 453-205 chr5 54724152 54724444 + 2 NA intron (NR_104658, intron 1 of 2) intron (NR_104658, intron 1 of 2) 19960 NR_104658 102467080 Hs.637409 NR_104658 LOC102467080 - uncharacterized LOC102467080 ncRNA 371-140 chr16 82957616 82957870 + 2 NA intron (NR_110937, intron 1 of 2) MIRb|SINE|MIR 32555 NR_110937 101928417 Hs.569538 NR_110937 ENSG00000260832 LOC101928417 - uncharacterized LOC101928417 ncRNA 558-44 chr12 103016484 103016785 + 2 NA Intergenic Intergenic -58193 NM_001354304 5053 Hs.560019 NM_000277 ENSG00000171759 PAH PH|PKU|PKU1 phenylalanine hydroxylase protein-coding 424-45 chr11 78591668 78592021 + 2 NA Intergenic L1M5|LINE|L1 -16980 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 319-140 chr14 57763635 57763863 + 2 NA intron (NR_159373, intron 1 of 10) intron (NR_159373, intron 1 of 10) 101250 NM_001352012 341880 Hs.28280 NM_001080455 ENSG00000151812 SLC35F4 C14orf36|c14_5373 solute carrier family 35 member F4 protein-coding 233-74 chr12 19587479 19587686 + 2 NA Intergenic Intergenic 146983 NM_001267043 121536 Hs.126497 NM_153207 ENSG00000139154 AEBP2 - AE binding protein 2 protein-coding 284-396 chr8 20903068 20903291 + 2 NA Intergenic Intergenic -50454 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 415-182 chr3 90584365 90584626 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1476874 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 429-260 chr6 134036613 134037011 + 2 NA intron (NM_145176, intron 1 of 4) intron (NM_145176, intron 1 of 4) 15812 NM_145176 154091 Hs.486508 NM_145176 ENSG00000146411 SLC2A12 GLUT12|GLUT8 solute carrier family 2 member 12 protein-coding 666-9 chr10 76357182 76357698 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -530604 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 290-482 chr9 32801262 32801525 + 2 NA Intergenic LTR16C|LTR|ERVL 17853 NM_212558 401498 Hs.522063 NM_212558 ENSG00000188133 TMEM215 - transmembrane protein 215 protein-coding 431-149 chr2 176231307 176231720 + 2 NA Intergenic Intergenic -37929 NM_001319097 10651 Hs.470728 NM_006554 ENSG00000128654 MTX2 - metaxin 2 protein-coding 276-38 chr1 242104612 242104880 + 2 NA intron (NM_001320272, intron 9 of 10) AluJr|SINE|Alu -105648 NM_001004343 440738 Hs.534971 NM_001004343 ENSG00000197769 MAP1LC3C ATG8J|LC3C microtubule associated protein 1 light chain 3 gamma protein-coding 488-172 chr3 69266019 69266328 + 2 NA intron (NM_015123, intron 5 of 22) AluJb|SINE|Alu 119915 NM_015123 23150 Hs.371681 NM_015123 ENSG00000114541 FRMD4B 6030440G05Rik|GRSP1 FERM domain containing 4B protein-coding 361-7 chr1 73088612 73088884 + 2 NA Intergenic L1MA3|LINE|L1 -217422 NR_110676 101927295 Hs.436589 NR_110676 ENSG00000233973 LINC01360 - long intergenic non-protein coding RNA 1360 ncRNA 467-70 chr13 64052012 64052299 + 2 NA intron (NR_145420, intron 1 of 5) intron (NR_145420, intron 1 of 5) 23856 NR_145420 144766 Hs.719557 NR_145420 ENSG00000227674 LINC00355 - long intergenic non-protein coding RNA 355 ncRNA 586-68 chr19 46586427 46586753 + 2 NA intron (NM_001370550, intron 1 of 2) Tigger3a|DNA|TcMar-Tigger 14326 NM_001370550 100506012 Hs.671661 NM_001205281 ENSG00000230510 PPP5D1 - PPP5 tetratricopeptide repeat domain containing 1 protein-coding 332-238 chr2 12745157 12745440 + 2 NA Intergenic Intergenic 7931 NR_036072 100422986 NR_036072 ENSG00000264370 MIR3125 mir-3125 microRNA 3125 ncRNA 376-163 chr19 36643528 36643864 + 2 NA intron (NM_001297623, intron 4 of 4) Charlie1|DNA|hAT-Charlie 23141 NM_001297623 92283 Hs.590972 NM_153257 ENSG00000197808 ZNF461 GIOT-1|GIOT1|HZF28 zinc finger protein 461 protein-coding 360-202 chr2 14766703 14766911 + 2 NA Intergenic Intergenic 134090 NR_144632 151354 Hs.260855 NM_145175 ENSG00000162981 LRATD1 FAM84A|NSE1|PP11517 LRAT domain containing 1 protein-coding 400-38 chr10 89493819 89494117 + 2 NA intron (NM_213606, intron 2 of 7) intron (NM_213606, intron 2 of 7) 37977 NR_120614 101926906 Hs.568874 NR_120614 ENSG00000234452 SLC16A12-AS1 - SLC16A12 antisense RNA 1 ncRNA 357-193 chr2 41892867 41893083 + 2 NA non-coding (NR_033996, exon 3 of 3) non-coding (NR_033996, exon 3 of 3) 15420 NR_033996 388942 Hs.631883 NR_033996 ENSG00000214691 LINC01913 - long intergenic non-protein coding RNA 1913 ncRNA 333-174 chr16 12730319 12730548 + 2 NA intron (NM_018340, intron 2 of 3) L1ME3|LINE|L1 10112 NR_039869 100616195 NR_039869 ENSG00000264733 MIR4718 - microRNA 4718 ncRNA 229-93 chr12 93684346 93684549 + 2 NA intron (NM_001320100, intron 2 of 2) MER1B|DNA|hAT-Charlie 5678 NM_001330126 8738 Hs.38533 NM_003805 ENSG00000169372 CRADD MRT34|RAIDD CASP2 and RIPK1 domain containing adaptor with death domain protein-coding 168-108 chr8 76182159 76182258 + 2 NA Intergenic L1MD1|LINE|L1 -224446 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 522-121 chr2 3021311 3021677 + 2 NA intron (NR_110228, intron 3 of 6) intron (NR_110228, intron 3 of 6) 104532 NR_110228 101927554 Hs.638446 NR_110228 ENSG00000234423 LINC01250 - long intergenic non-protein coding RNA 1250 ncRNA 303-248 chr20 22005047 22005301 + 2 NA Intergenic Charlie10|DNA|hAT-Charlie -48916 NR_038394 100270679 Hs.385748 NR_038394 ENSG00000234435 LINC01432 - long intergenic non-protein coding RNA 1432 ncRNA 234-175 chr2 80582248 80582416 + 2 NA intron (NM_001282599, intron 8 of 11) intron (NM_001282599, intron 8 of 11) 268953 NM_001282599 1496 Hs.167368 NM_004389 ENSG00000066032 CTNNA2 CAP-R|CAPR|CDCBM9|CT114|CTNR catenin alpha 2 protein-coding 377-232 chr2 194262792 194263138 + 2 NA Intergenic Intergenic -81304 NR_110222 101927406 Hs.385793 NR_110222 ENSG00000225539 LINC01821 - long intergenic non-protein coding RNA 1821 ncRNA 513-182 chr3 77166404 77166735 + 2 NA intron (NM_001290039, intron 2 of 26) AluY|SINE|Alu 68557 NM_001128929 6092 Hs.13305 NM_002942 ENSG00000185008 ROBO2 SAX3 roundabout guidance receptor 2 protein-coding 531-248 chr8 129560403 129560882 + 2 NA intron (NR_130917, intron 1 of 3) intron (NR_130917, intron 1 of 3) 14376 NR_130919 137196 Hs.679457 NR_130917 ENSG00000229140 CCDC26 RAM CCDC26 long non-coding RNA ncRNA 202-199 chr5 16663416 16663585 + 2 NA 3' UTR (NM_012334, exon 41 of 41) 3' UTR (NM_012334, exon 41 of 41) -46442 NM_001034850 54463 Hs.481704 NM_019000 ENSG00000154153 RETREG1 FAM134B|JK-1|JK1 reticulophagy regulator 1 protein-coding 390-139 chr17 18650617 18650932 + 2 NA Intergenic Intergenic -6347 NM_001039397 254272 Hs.434123 NM_001039397 ENSG00000189375 TBC1D28 - TBC1 domain family member 28 protein-coding 262-116 chr14 29773442 29773627 + 2 NA intron (NM_001330069, intron 1 of 18) intron (NM_001330069, intron 1 of 18) 153562 NM_001348390 5587 Hs.508999 NM_002742 ENSG00000184304 PRKD1 CHDED|PKC-MU|PKCM|PKD|PRKCM protein kinase D1 protein-coding 382-216 chr2 122792831 122793207 + 2 NA Intergenic Intergenic 280462 NR_147208 107985818 Hs.580182 NR_147208 ENSG00000232740 LINC01826 lnc-MKI67IP-3 long intergenic non-protein coding RNA 1826 ncRNA 293-388 chr7 9925390 9925633 + 2 NA Intergenic L2c|LINE|L2 291241 NR_002790 168741 Hs.545134 NR_002790 PER4 - period circadian regulator 3 pseudogene pseudo 254-3 chr1 34470788 34470958 + 2 NA Intergenic MER97c|DNA|hAT-Tip100 198821 NR_030278 693137 NR_030278 ENSG00000207941 MIR552 MIRN552|hsa-mir-552 microRNA 552 ncRNA 479-263 chr8 127859549 127859856 + 2 NA intron (NR_003367, intron 1 of 8) MIRb|SINE|MIR 63740 NR_031609 100302185 NR_031609 ENSG00000283710 MIR1204 hsa-mir-1204 microRNA 1204 ncRNA 304-562 chrX 14285879 14286139 + 2 NA Intergenic L1M5|LINE|L1 41744 NR_110506 286480 Hs.567831 NR_110506 UBE2E4P UbcM2 ubiquitin conjugating enzyme E2 E4 pseudogene pseudo 272-356 chr5 110444815 110445041 + 2 NA intron (NM_001039763, intron 12 of 13) HAL1|LINE|L1 68987 NR_031644 100302159 NR_031644 ENSG00000221436 MIR548F3 MIR548F-3|MIRN548F3|hsa-mir-548f-3 microRNA 548f-3 ncRNA 247-302 chr4 89659846 89660077 + 2 NA Intergenic L1ME3Cz|LINE|L1 -176440 NR_045481 644248 Hs.553954 NR_045481 ENSG00000247775 SNCA-AS1 - SNCA antisense RNA 1 ncRNA 220-304 chr5 149701920 149702134 + 2 NA Intergenic MIR|SINE|MIR -28283 NM_133263 133522 Hs.483816 NM_133263 ENSG00000155846 PPARGC1B ERRL1|PERC|PGC-1(beta)|PGC1B PPARG coactivator 1 beta protein-coding 320-312 chr20 42772322 42772619 + 2 NA intron (NM_133170, intron 4 of 31) intron (NM_133170, intron 4 of 31) 86987 NR_110004 101927159 Hs.570383 NR_110004 ENSG00000229042 LOC101927159 - uncharacterized LOC101927159 ncRNA 846-14 chr14 36727755 36728316 + 2 NA intron (NM_001171170, intron 5 of 10) intron (NM_001171170, intron 5 of 10) 70467 NM_006194 5083 Hs.132576 NM_006194 ENSG00000198807 PAX9 STHAG3 paired box 9 protein-coding 323-207 chr18 69815538 69815743 + 2 NA intron (NM_152721, intron 7 of 7) intron (NM_152721, intron 7 of 7) 132233 NM_001303618 10666 Hs.660130 NM_006566 ENSG00000150637 CD226 DNAM-1|DNAM1|PTA1|TLiSA1 CD226 molecule protein-coding 237-191 chr2 122309518 122309668 + 2 NA Intergenic Intergenic 553942 NM_004622 7247 Hs.75066 NM_004622 ENSG00000211460 TSN BCLF-1|C3PO|RCHF1|REHF-1|TBRBP|TRSLN translin protein-coding 399-258 chr5 130866357 130866744 + 2 NA Intergenic MER68B|LTR|ERVL 298706 NM_005340 3094 Hs.483305 NM_005340 ENSG00000169567 HINT1 HINT|NMAN|PKCI-1|PRKCNH1 histidine triad nucleotide binding protein 1 protein-coding 393-68 chr12 26981751 26982037 + 2 NA intron (NM_016551, intron 7 of 11) intron (NM_016551, intron 7 of 11) 32490 NM_016551 51768 Hs.438641 NM_016551 ENSG00000064115 TM7SF3 - transmembrane 7 superfamily member 3 protein-coding 287-323 chr5 102527467 102527651 + 2 NA Intergenic Intergenic -28558 NM_001289004 133482 Hs.388874 NM_173488 ENSG00000205359 SLCO6A1 CT48|GST|OATP-I|OATP6A1|OATPY solute carrier organic anion transporter family member 6A1 protein-coding 179-103 chr6 40907516 40907656 + 2 NA intron (NR_110873, intron 1 of 5) intron (NR_110873, intron 1 of 5) 115694 NR_110873 101929555 Hs.552555 NR_110873 LOC101929555 - uncharacterized LOC101929555 ncRNA 436-201 chr4 35294710 35295122 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR 949023 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 336-585 chr9 93782258 93782488 + 2 NA Intergenic L1MA2|LINE|L1 -36984 NR_036254 100422927 NR_036254 ENSG00000265347 MIR4291 - microRNA 4291 ncRNA 274-225 chr2 179371823 179371995 + 2 NA Intergenic (ATATT)n|Simple_repeat|Simple_repeat -107077 NM_178123 91404 Hs.30977 NM_178123 ENSG00000187231 SESTD1 SOLO SEC14 and spectrin domain containing 1 protein-coding 315-17 chr1 91788635 91788946 + 2 NA intron (NR_036634, intron 4 of 17) intron (NR_036634, intron 4 of 17) 97361 NM_001195683 7049 Hs.482390 NM_003243 ENSG00000069702 TGFBR3 BGCAN|betaglycan transforming growth factor beta receptor 3 protein-coding 139-71 chr5 68610579 68610685 + 2 NA Intergenic L1MEc|LINE|L1 318055 NM_001242466 5295 Hs.132225 NM_181504 ENSG00000145675 PIK3R1 AGM7|GRB1|IMD36|p85|p85-ALPHA phosphoinositide-3-kinase regulatory subunit 1 protein-coding 405-322 chr8 84881036 84881402 + 2 NA intron (NM_001354323, intron 7 of 7) intron (NM_001354323, intron 7 of 7) 175292 NM_001287244 138046 Hs.121663 NM_173848 ENSG00000184672 RALYL HNRPCL3 RALY RNA binding protein like protein-coding 243-61 chr10 104485056 104485260 + 2 NA Intergenic L2c|LINE|L2 -4883 NR_120624 101927523 Hs.407539 NR_120624 ENSG00000225768 LINC02620 - long intergenic non-protein coding RNA 2620 ncRNA 272-266 chr3 56490881 56491055 + 2 NA Intergenic Intergenic -22501 NM_015576 26059 Hs.476389 NM_015576 ENSG00000187672 ERC2 CAST|CAST1|ELKSL|SPBC110|Spc110 ELKS/RAB6-interacting/CAST family member 2 protein-coding 173-101 chr4 45459322 45459448 + 2 NA Intergenic Intergenic 664669 NM_173536 2565 Hs.375051 NM_173536 ENSG00000163285 GABRG1 - gamma-aminobutyric acid type A receptor gamma1 subunit protein-coding 313-174 chr15 99080957 99081264 + 2 NA Intergenic L1ME3A|LINE|L1 -23970 NM_145728 23336 Hs.207106 NM_015286 ENSG00000182253 SYNM DMN|SYN synemin protein-coding 506-72 chr13 47612607 47613086 + 2 NA Intergenic L1PREC2|LINE|L1 319776 NR_047492 100861549 Hs.660978 NR_047492 ENSG00000260388 LINC00562 - long intergenic non-protein coding RNA 562 ncRNA 157-52 chr19 31855305 31855435 + 2 NA Intergenic L1MC1|LINE|L1 -170492 NR_110673 100996665 Hs.443685 NR_110673 ENSG00000267779 LINC01533 CTC-360P9.3 long intergenic non-protein coding RNA 1533 ncRNA 592-41 chr12 132889370 132889821 + 2 NA Intergenic LTR7|LTR|ERV1 1753 NR_110919 101928530 Hs.560003 NR_110919 ENSG00000236617 LOC101928530 - uncharacterized LOC101928530 ncRNA 261-90 chr13 75039326 75039515 + 2 NA Intergenic L1MC5a|LINE|L1 200961 NR_027466 647288 Hs.567920 NR_027466 ENSG00000214249 CTAGE11P - CTAGE family member 11, pseudogene pseudo 449-93 chr16 60993049 60993377 + 2 NA Intergenic Intergenic 62553 NR_039624 100616345 NR_039624 ENSG00000283795 MIR4426 - microRNA 4426 ncRNA 943-21 chr5 152881637 152882302 + 2 NA intron (NR_109877, intron 2 of 4) MamRep1894|DNA|hAT 90380 NR_109877 101927134 Hs.531423 NR_109877 ENSG00000249484 LINC01470 - long intergenic non-protein coding RNA 1470 ncRNA 233-4 chr1 81677863 81678028 + 2 NA intron (NM_001366008, intron 3 of 26) L2c|LINE|L2 -21825 NM_001297704 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 182-128 chr4 144895046 144895200 + 2 NA Intergenic LTR31|LTR|ERV1 202259 NM_001318367 10393 Hs.480876 NM_014885 ENSG00000164162 ANAPC10 APC10|DOC1 anaphase promoting complex subunit 10 protein-coding 335-527 chr8 48472500 48472745 + 2 NA Intergenic MER51A|LTR|ERV1 -78945 NR_105002 101929268 Hs.683934 NR_105002 ENSG00000253608 LOC101929268 - uncharacterized LOC101929268 ncRNA 236-117 chr14 68407494 68407638 + 2 NA intron (NM_133509, intron 8 of 10) Tigger3b|DNA|TcMar-Tigger 221221 NR_135816 100996664 NR_135816 LOC100996664 - uncharacterized LOC100996664 ncRNA 454-268 chr6 13943247 13943630 + 2 NA intron (NM_001165033, intron 1 of 1) AluJb|SINE|Alu 18245 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 379-170 chr2 115243846 115244197 + 2 NA intron (NM_001321906, intron 2 of 26) intron (NM_001321906, intron 2 of 26) -65216 NM_001321907 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 371-49 chr10 60988883 60989097 + 2 NA intron (NM_001350902, intron 1 of 11) intron (NM_001350902, intron 1 of 11) 12007 NM_001350908 9886 Hs.737374 NM_014836 ENSG00000072422 RHOBTB1 - Rho related BTB domain containing 1 protein-coding 362-322 chr4 111820107 111820443 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR -325179 NM_152400 132720 Hs.23439 NM_152400 ENSG00000174749 FAM241A C4orf32 family with sequence similarity 241 member A protein-coding 316-586 chr9 83319884 83320090 + 2 NA intron (NM_001244960, intron 6 of 13) L1M2a1|LINE|L1 11974 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 225-338 chr7 115748516 115748673 + 2 NA Intergenic Intergenic -167153 NR_145801 109623459 NR_145801 ENSG00000202377 SNORA25B - small nucleolar RNA, H/ACA box 25B snoRNA 579-58 chr18 66103871 66104284 + 2 NA Intergenic Intergenic 353065 NM_001362438 1005 Hs.541003 NM_004361 ENSG00000081138 CDH7 CDH7L1 cadherin 7 protein-coding 330-343 chr3 34366140 34366332 + 2 NA Intergenic MIR|SINE|MIR 567606 NM_013374 10015 Hs.475896 NM_013374 ENSG00000170248 PDCD6IP AIP1|ALIX|DRIP4|HP95 programmed cell death 6 interacting protein protein-coding 281-218 chr2 113906440 113906668 + 2 NA intron (NM_001277140, intron 1 of 11) L1MB3|LINE|L1 -15562 NR_110174 101060091 Hs.741753 NR_110174 ACTR3-AS1 - ACTR3 antisense RNA 1 ncRNA 317-360 chr4 91301361 91301646 + 2 NA intron (NM_001145065, intron 10 of 10) intron (NM_001145065, intron 10 of 10) 975799 NR_125920 101929194 Hs.626389 NR_125920 LNCPRESS2 - lncRNA p53 regulated and ESC associated 2 ncRNA 273-398 chr6 126138733 126138899 + 2 NA Intergenic Intergenic 152276 NM_001031712 60487 Hs.404186 NM_021820 ENSG00000066651 TRMT11 C6orf75|MDS024|TRM11|TRMT11-1 tRNA methyltransferase 11 homolog protein-coding 808-61 chr8 138599554 138600140 + 2 NA intron (NM_152888, intron 60 of 64) MIR3|SINE|MIR -102117 NM_001362965 51059 Hs.126024 NM_015912 ENSG00000147724 FAM135B C8ORFK32 family with sequence similarity 135 member B protein-coding 445-237 chr6 90183892 90184282 + 2 NA intron (NM_021813, intron 4 of 8) intron (NM_021813, intron 4 of 8) 112756 NM_021813 60468 Hs.269764 NM_021813 ENSG00000112182 BACH2 BTBD25|IMD60 BTB domain and CNC homolog 2 protein-coding 352-354 chr4 42919479 42919689 + 2 NA intron (NM_001080476, intron 1 of 3) intron (NM_001080476, intron 1 of 3) 26318 NM_001080476 389207 Hs.162559 NM_001080476 ENSG00000215203 GRXCR1 DFNB25|PPP1R88 glutaredoxin and cysteine rich domain containing 1 protein-coding 403-16 chr1 181084083 181084404 + 2 NA Intergenic Intergenic -4457 NM_016545 51278 Hs.15725 NM_016545 ENSG00000162783 IER5 SBBI48 immediate early response 5 protein-coding 269-61 chr11 27605044 27605223 + 2 NA intron (NR_033314, intron 3 of 6) intron (NR_033314, intron 3 of 6) 29494 NR_102708 101410541 Hs.471439 NR_102708 ENSG00000254934 LINC00678 - long intergenic non-protein coding RNA 678 ncRNA 312-245 chr2 99138623 99138808 + 2 NA intron (NM_001349013, intron 1 of 16) intron (NM_001349013, intron 1 of 16) 2465 NR_146001 80705 Hs.120267 NM_025244 ENSG00000135951 TSGA10 CEP4L|CT79|SPGF26 testis specific 10 protein-coding 252-176 chr2 6509929 6510156 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR 123745 NR_110500 102800315 Hs.729713 NR_110498 ENSG00000236172 LINC01246 - long intergenic non-protein coding RNA 1246 ncRNA 277-103 chr13 73661470 73661631 + 2 NA Intergenic Intergenic 97306 NR_047009 100874155 Hs.672679 NR_047009 LINC00392 - long intergenic non-protein coding RNA 392 ncRNA 634-142 chr7 31232085 31232561 + 2 NA Intergenic Intergenic 108403 NM_022728 63974 Hs.45152 NM_022728 ENSG00000164600 NEUROD6 Atoh2|MATH2|Math-2|NEX1M|Nex1|bHLHa2 neuronal differentiation 6 protein-coding 343-154 chr15 26277106 26277342 + 2 NA Intergenic Intergenic 161411 NR_038852 503519 Hs.371380 NR_038851 ENSG00000259150 LINC00929 - long intergenic non-protein coding RNA 929 ncRNA 491-65 chr14 27718443 27718876 + 2 NA Intergenic Intergenic -45438 NR_148992 728755 Hs.652058 NR_148991 ENSG00000258932 LOC728755 - uncharacterized LOC728755 ncRNA 285-77 chr12 9229226 9229368 + 2 NA intron (NR_040112, intron 8 of 8) intron (NR_040112, intron 8 of 8) 4910 NR_040112 3 Hs.569125 NR_040112 ENSG00000256069 A2MP1 A2MP alpha-2-macroglobulin pseudogene 1 pseudo 379-226 chr3 177417933 177418204 + 2 NA Intergenic L1MC4a|LINE|L1 -23853 NR_047568 100505566 Hs.581170 NR_047568 LINC00578 - long intergenic non-protein coding RNA 578 ncRNA 421-181 chr3 25325190 25325464 + 2 NA intron (NM_001290216, intron 4 of 10) MER41B|LTR|ERV1 -15475 NM_001290300 5915 Hs.543218 NM_000965 ENSG00000077092 RARB HAP|MCOPS12|NR1B2|RARbeta1|RRB2 retinoic acid receptor beta protein-coding 356-279 chr2 226641116 226641425 + 2 NA Intergenic Intergenic 17523 NR_049887 100847053 NR_049887 ENSG00000263363 MIR5702 - microRNA 5702 ncRNA 267-15 chr1 90846197 90846415 + 2 NA intron (NR_147931, intron 1 of 2) MIRc|SINE|MIR 5332 NR_135038 105378853 Hs.546492 NR_135038 ENSG00000233593 LINC02609 - long intergenic non-protein coding RNA 2609 ncRNA 316-391 chr4 54736823 54737078 + 2 NA intron (NM_000222, intron 19 of 20) intron (NM_000222, intron 19 of 20) 79022 NM_000222 3815 Hs.479754 NM_000222 ENSG00000157404 KIT C-Kit|CD117|MASTC|PBT|SCFR KIT proto-oncogene, receptor tyrosine kinase protein-coding 235-106 chr14 86488164 86488373 + 2 NA Intergenic L1ME1|LINE|L1 -417510 NR_038445 283585 Hs.381998 NR_038445 ENSG00000258804 LINC01148 - long intergenic non-protein coding RNA 1148 ncRNA 427-74 chr14 71587611 71587965 + 2 NA 5' UTR (NM_001354287, exon 5 of 24) 5' UTR (NM_001354287, exon 5 of 24) 1490 NM_001284246 26037 Hs.654657 NM_015556 ENSG00000197555 SIPA1L1 E6TP1|SPAR1 signal induced proliferation associated 1 like 1 protein-coding 258-265 chr3 112322539 112322723 + 2 NA intron (NR_147411, intron 1 of 4) L1MEg|LINE|L1 -9942 NM_001365855 4345 Hs.79015 NM_005944 ENSG00000091972 CD200 MOX1|MOX2|MRC|OX-2 CD200 molecule protein-coding 472-354 chrX 134053590 134054034 + 2 NA Intergenic L1PA8|LINE|L1 -68166 NM_004484 2719 Hs.644108 NM_004484 ENSG00000147257 GPC3 DGSX|GTR2-2|MXR7|OCI-5|SDYS|SGB|SGBS|SGBS1 glypican 3 protein-coding 376-112 chr15 26388817 26389019 + 2 NA Intergenic Intergenic 240172 NR_103801 2562 Hs.302352 NM_000814 ENSG00000166206 GABRB3 ECA5|EIEE43 gamma-aminobutyric acid type A receptor beta3 subunit protein-coding 186-39 chr12 105884231 105884375 + 2 NA Intergenic GA-rich|Low_complexity|Low_complexity 177529 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 346-184 chr17 11860050 11860332 + 2 NA intron (NM_001372, intron 50 of 68) HAL1|LINE|L1 -22711 NM_004662 1770 Hs.567259 NM_001372 ENSG00000007174 DNAH9 CILD40|DNAH17L|DNEL1|DYH9|Dnahc9|HL-20|HL20 dynein axonemal heavy chain 9 protein-coding 132-96 chr9 71360587 71360696 + 2 NA intron (NM_001366143, intron 1 of 25) intron (NM_001366143, intron 1 of 25) 86330 NM_001366144 80036 Hs.47288 NM_020952 ENSG00000083067 TRPM3 GON-2|LTRPC3|MLSN2 transient receptor potential cation channel subfamily M member 3 protein-coding 373-63 chr10 105557674 105557920 + 2 NA Intergenic Intergenic 262536 NR_120625 101927549 Hs.556885 NR_120625 LINC02627 - long intergenic non-protein coding RNA 2627 ncRNA 328-467 chr5 115742460 115742692 + 2 NA Intergenic L1M1|LINE|L1 -69924 NR_104674 102467217 Hs.147738 NR_104674 LOC102467217 - uncharacterized LOC102467217 ncRNA 354-25 chr1 177659653 177659867 + 2 NA Intergenic Intergenic -40764 NR_110722 101928778 Hs.573792 NR_110722 ENSG00000236720 LINC01741 - long intergenic non-protein coding RNA 1741 ncRNA 358-294 chr3 68595689 68595920 + 2 NA Intergenic Intergenic 95167 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 194-226 chr9 83351633 83351782 + 2 NA intron (NM_001244960, intron 3 of 13) (AGAT)n|Simple_repeat|Simple_repeat -19746 NM_001244961 257019 Hs.127535 NM_174938 ENSG00000172159 FRMD3 4.1O|EPB41L4O|EPB41LO|P410 FERM domain containing 3 protein-coding 357-408 chr7 6544625 6544873 + 2 NA intron (NM_001145118, intron 1 of 21) AluJr|SINE|Alu 6687 NM_001145118 392862 Hs.512174 NM_001145118 ENSG00000215045 GRID2IP DELPHILIN Grid2 interacting protein protein-coding 299-101 chr12 40001069 40001351 + 2 NA intron (NM_052885, intron 3 of 9) intron (NM_052885, intron 3 of 9) 104871 NM_052885 114134 Hs.558595 NM_052885 ENSG00000151229 SLC2A13 HMIT solute carrier family 2 member 13 protein-coding 342-272 chr2 238845091 238845362 + 2 NA non-coding (NR_157851, exon 1 of 1) non-coding (NR_157851, exon 1 of 1) 2681 NR_157851 100287387 Hs.516864 NR_157851 LOC100287387 - uncharacterized LOC100287387 ncRNA 548-28 chr10 125368077 125368620 + 2 NA Intergenic Intergenic -206023 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 334-571 chr9 92935948 92936201 + 2 NA Intergenic Intergenic -11449 NM_001083536 89846 Hs.411081 NM_033086 ENSG00000127084 FGD3 ZFYVE5 FYVE, RhoGEF and PH domain containing 3 protein-coding 398-142 chr18 22920127 22920486 + 2 NA Intergenic AluJo|SINE|Alu -13022 NM_002894 5932 Hs.546282 NM_002894 ENSG00000101773 RBBP8 COM1|CTIP|JWDS|RIM|SAE2|SCKL2 RB binding protein 8, endonuclease protein-coding 325-290 chr2 184414632 184414838 + 2 NA Intergenic MER20B|DNA|hAT-Charlie 35760 NR_039638 100616305 NR_039638 ENSG00000266808 MIR548AE1 - microRNA 548ae-1 ncRNA 258-267 chr3 127838975 127839172 + 2 NA Intergenic L1MA7|LINE|L1 -15823 NM_001003794 11343 Hs.277035 NM_007283 ENSG00000074416 MGLL HU-K5|HUK5|MAGL|MGL monoglyceride lipase protein-coding 299-172 chr17 55905391 55905667 + 2 NA Intergenic MIR|SINE|MIR 154424 NM_001102402 58488 Hs.285218 NM_021213 ENSG00000141179 PCTP PC-TP|STARD2 phosphatidylcholine transfer protein protein-coding 340-64 chr10 128242443 128242651 + 2 NA Intergenic Intergenic -43403 NR_120619 101927381 Hs.523342 NR_120619 ENSG00000280953 LINC01163 TCONS_00017722 long intergenic non-protein coding RNA 1163 ncRNA 575-180 chr7 16946396 16946803 + 2 NA Intergenic Intergenic -64616 NM_176813 155465 Hs.100686 NM_176813 ENSG00000173467 AGR3 AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 anterior gradient 3, protein disulphide isomerase family member protein-coding 258-198 chr2 116830441 116830638 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -984152 NM_006773 8886 Hs.744922 NM_006773 ENSG00000088205 DDX18 Has1|MrDb DEAD-box helicase 18 protein-coding 558-43 chr12 47433532 47433882 + 2 NA Intergenic L1MA4A|LINE|L1 18699 NR_149087 111082992 Hs.380659 NR_149087 LINC02156 - long intergenic non-protein coding RNA 2156 ncRNA 226-263 chr4 145424206 145424389 + 2 NA Intergenic L1MEc|LINE|L1 -57009 NM_001354812 4086 Hs.604588 NM_005900 ENSG00000170365 SMAD1 BSP-1|BSP1|JV4-1|JV41|MADH1|MADR1 SMAD family member 1 protein-coding 505-181 chr20 61715122 61715567 + 2 NA intron (NM_001252339, intron 1 of 14) MSTD|LTR|ERVL-MaLR 4404 NR_147702 100128310 Hs.683806 NR_147702 ENSG00000179253 LOC100128310 - uncharacterized LOC100128310 ncRNA 280-202 chr2 114802187 114802371 + 2 NA intron (NM_001321910, intron 2 of 26) intron (NM_001321910, intron 2 of 26) 31269 NR_132105 101927591 Hs.553019 NR_132105 ENSG00000231538 DPP10-AS3 - DPP10 antisense RNA 3 ncRNA 271-60 chr10 121335064 121335294 + 2 NA Intergenic L2a|LINE|L2 196135 NM_001320654 2263 Hs.533683 NM_000141 ENSG00000066468 FGFR2 BBDS|BEK|BFR-1|CD332|CEK3|CFD1|ECT1|JWS|K-SAM|KGFR|TK14|TK25 fibroblast growth factor receptor 2 protein-coding 263-242 chr21 43841236 43841425 + 2 NA Intergenic L1M4|LINE|L1 -23893 NM_001369878 56894 Hs.248785 NM_020132 ENSG00000160216 AGPAT3 1-AGPAT 3|LPAAT-GAMMA1|LPAAT3 1-acylglycerol-3-phosphate O-acyltransferase 3 protein-coding 158-79 chr3 162201701 162201853 + 2 NA Intergenic L1MEc|LINE|L1 704969 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 319-118 chr12 126549003 126549261 + 2 NA Intergenic Intergenic -99805 NR_147498 283435 Hs.667334 NR_147498 LINC02825 - long intergenic non-protein coding RNA 2825 ncRNA 372-502 chr8 137899953 137900206 + 2 NA intron (NR_161374, intron 2 of 7) intron (NR_161374, intron 2 of 7) 183466 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 660-41 chr2 84568989 84569457 + 2 NA intron (NM_001370, intron 11 of 76) L1MC5a|LINE|L1 52768 NM_001370 1768 Hs.249972 NM_001370 ENSG00000115423 DNAH6 DNHL1|Dnahc6|HL-2|HL2 dynein axonemal heavy chain 6 protein-coding 620-145 chr8 95569808 95570258 + 2 NA intron (NR_038207, intron 2 of 2) L1MA8|LINE|L1 -300832 NM_177965 157657 Hs.548157 NM_177965 ENSG00000156172 C8orf37 BBS21|CORD16|RP64|smalltalk chromosome 8 open reading frame 37 protein-coding 352-358 chr4 48260041 48260258 + 2 NA intron (NM_003215, intron 1 of 17) intron (NM_003215, intron 1 of 17) 9689 NM_003215 7006 Hs.479670 NM_003215 ENSG00000135605 TEC PSCTK4 tec protein tyrosine kinase protein-coding 192-110 chr2 191061831 191061931 + 2 NA intron (NM_003151, intron 9 of 23) intron (NM_003151, intron 9 of 23) 40355 NR_136318 105373805 Hs.570280 NR_136318 ENSG00000231858 LOC105373805 - uncharacterized LOC105373805 ncRNA 240-124 chr13 85964129 85964360 + 2 NA Intergenic L1ME3A|LINE|L1 -164825 NM_032229 84189 Hs.525105 NM_032229 ENSG00000184564 SLITRK6 DFNMYP SLIT and NTRK like family member 6 protein-coding 249-309 chr4 151444367 151444544 + 2 NA intron (NM_001348694, intron 1 of 12) L1ME3D|LINE|L1 35279 NM_001109977 729830 Hs.633810 NM_001109977 ENSG00000164142 FAM160A1 - family with sequence similarity 160 member A1 protein-coding 368-451 chr8 79897730 79898060 + 2 NA Intergenic Intergenic -26158 NR_110954 101927040 Hs.350876 NR_110954 ENSG00000249328 LOC101927040 - uncharacterized LOC101927040 ncRNA 254-240 chr3 49237526 49237761 + 2 NA intron (NM_001135197, intron 3 of 7) intron (NM_001135197, intron 3 of 7) -36477 NR_036233 100422952 NR_036233 ENSG00000264633 MIR4271 - microRNA 4271 ncRNA 205-223 chr5 74321530 74321726 + 2 NA promoter-TSS (NR_105010) promoter-TSS (NR_105010) -858 NR_105010 101929082 Hs.434316 NR_105010 ENSG00000249343 LINC01333 - long intergenic non-protein coding RNA 1333 ncRNA 289-41 chr1 241502792 241502972 + 2 NA intron (NM_000143, intron 7 of 9) L2c|LINE|L2 16903 NM_000143 2271 Hs.592490 NM_000143 ENSG00000091483 FH FMRD|HLRCC|HsFH|LRCC|MCL|MCUL1 fumarate hydratase protein-coding 280-278 chr4 31340066 31340279 + 2 NA Intergenic Intergenic -166372 NR_149122 105374565 Hs.112715 NR_149121 LINC02501 - long intergenic non-protein coding RNA 2501 ncRNA 362-439 chr8 88629872 88630157 + 2 NA Intergenic L1MCb|LINE|L1 -302531 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 303-400 chr6 98818055 98818230 + 2 NA Intergenic L1ME5|LINE|L1 13558 NR_148381 105447646 Hs.211213 NR_148381 PNKY - long intergenic non-protein coding RNA PNKY ncRNA 246-372 chr7 54464645 54464877 + 2 NA Intergenic Intergenic -77564 NM_182546 222008 Hs.335933 NM_182546 ENSG00000170419 VSTM2A VSTM2 V-set and transmembrane domain containing 2A protein-coding 405-258 chr5 122406918 122407320 + 2 NA intron (NM_001308109, intron 3 of 7) L2b|LINE|L2 16030 NR_131761 9627 Hs.426463 NM_005460 ENSG00000064692 SNCAIP SYPH1|Sph1 synuclein alpha interacting protein protein-coding 253-327 chr5 46399678 46399849 + 2 NA Intergenic ALR/Alpha|Satellite|centr -703383 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 376-391 chr8 3434187 3434407 + 2 NA intron (NM_033225, intron 12 of 69) intron (NM_033225, intron 12 of 69) -705846 NR_125425 101927815 Hs.571467 NR_125423 ENSG00000254319 LOC101927815 - uncharacterized LOC101927815 ncRNA 219-144 chr18 50930454 50930616 + 2 NA intron (NM_002396, intron 12 of 15) intron (NM_002396, intron 12 of 15) -37505 NM_018696 55520 Hs.657360 NM_018696 ENSG00000141642 ELAC1 D29 elaC ribonuclease Z 1 protein-coding 259-311 chr5 42175909 42176162 + 2 NA promoter-TSS (NR_104635) promoter-TSS (NR_104635) -690 NR_104635 101926960 Hs.365692 NR_104635 LOC101926960 - uncharacterized LOC101926960 ncRNA 334-320 chr21 31388946 31389130 + 2 NA intron (NM_001353690, intron 1 of 27) MER58B|DNA|hAT-Charlie -44684 NM_001353687 7074 Hs.517228 NM_003253 ENSG00000156299 TIAM1 TIAM-1 T cell lymphoma invasion and metastasis 1 protein-coding 289-195 chr18 75080019 75080297 + 2 NA Intergenic Intergenic 125355 NM_001306093 284273 Hs.465433 NM_175907 ENSG00000180011 ZADH2 PRG-3 zinc binding alcohol dehydrogenase domain containing 2 protein-coding 236-333 chr7 71226257 71226435 + 2 NA intron (NM_022479, intron 1 of 10) intron (NM_022479, intron 1 of 10) -81328 NR_037479 100500920 NR_037479 ENSG00000283278 MIR3914-2 - microRNA 3914-2 ncRNA 314-443 chr4 168352852 168353019 + 2 NA Intergenic L1PA14|LINE|L1 -34183 NM_017631 55601 Hs.591710 NM_017631 ENSG00000137628 DDX60 - DExD/H-box helicase 60 protein-coding 351-98 chr12 103096242 103096505 + 2 NA Intergenic MER119|DNA|hAT-Charlie -55469 NR_126333 101929058 Hs.171310 NR_126333 ENSG00000257860 LOC101929058 - uncharacterized LOC101929058 ncRNA 232-294 chr5 23449682 23449851 + 2 NA Intergenic Intergenic -57843 NM_020227 56979 Hs.283096 NM_020227 ENSG00000164256 PRDM9 KMT8B|MEISETZ|MSBP3|PFM6|ZNF899 PR/SET domain 9 protein-coding 324-286 chr2 152596694 152596877 + 2 NA intron (NM_052905, intron 9 of 25) Charlie1a|DNA|hAT-Charlie 120676 NM_001365596 55660 Hs.643580 NM_017892 ENSG00000196504 PRPF40A FBP-11|FBP11|FLAF1|FNBP3|HIP-10|HIP10|HYPA|NY-REN-6|Prp40 pre-mRNA processing factor 40 homolog A protein-coding 455-296 chr9 30264429 30264795 + 2 NA Intergenic L1MA3|LINE|L1 143842 NR_046204 401497 Hs.680131 NR_046204 LINC01242 - long intergenic non-protein coding RNA 1242 ncRNA 360-399 chr6 38286496 38286720 + 2 NA intron (NM_052893, intron 9 of 11) intron (NM_052893, intron 9 of 11) -194988 NR_144472 101929425 Hs.665280 NR_144472 ENSG00000226533 BTBD9-AS1 - BTBD9 antisense RNA 1 ncRNA 176-157 chr9 119443557 119443709 + 2 NA Intergenic MIRb|SINE|MIR -74198 NM_014618 1620 Hs.532316 NM_014618 ENSG00000078725 BRINP1 DBC1|DBCCR1|FAM5A BMP/retinoic acid inducible neural specific 1 protein-coding 339-90 chr11 34393009 34393190 + 2 NA Intergenic L1PB1|LINE|L1 -35089 NM_145804 25841 Hs.23361 NM_145804 ENSG00000166016 ABTB2 ABTB2A|BTBD22 ankyrin repeat and BTB domain containing 2 protein-coding 359-353 chr4 40614546 40614780 + 2 NA intron (NM_001371114, intron 1 of 5) AluJo|SINE|Alu 15201 NM_001098634 54502 Hs.518727 NM_019027 ENSG00000163694 RBM47 NET18 RNA binding motif protein 47 protein-coding 223-169 chr2 165594258 165594476 + 2 NA intron (NM_024969, intron 1 of 4) intron (NM_024969, intron 1 of 4) 22031 NM_024969 80034 Hs.470479 NM_024969 ENSG00000178662 CSRNP3 FAM130A2|PPP1R73|TAIP-2|TAIP2 cysteine and serine rich nuclear protein 3 protein-coding 360-236 chr2 134543351 134543687 + 2 NA intron (NM_030923, intron 4 of 7) intron (NM_030923, intron 4 of 7) 175481 NM_030923 81615 Hs.369471 NM_030923 ENSG00000152128 TMEM163 DC29|SV31 transmembrane protein 163 protein-coding 310-409 chr5 87639772 87639975 + 2 NA Intergenic LTR8B|LTR|ERV1 -22169 NR_149089 111082994 Hs.544037 NR_149089 LINC02488 CTD-2316B1 long intergenic non-protein coding RNA 2488 ncRNA 592-106 chr3 14020135 14020651 + 2 NA intron (NR_002223, intron 1 of 2) intron (NR_002223, intron 1 of 2) 83086 NR_002223 348825 Hs.529180 NR_002223 ENSG00000180438 TPRXL TPRX3P tetrapeptide repeat homeobox like pseudo 261-217 chr20 50746431 50746566 + 2 NA intron (NM_032521, intron 2 of 2) intron (NM_032521, intron 2 of 2) 14918 NM_032521 84612 Hs.589848 NM_032521 ENSG00000124171 PARD6B PAR6B par-6 family cell polarity regulator beta protein-coding 229-99 chr13 25510797 25510955 + 2 NA intron (NM_016529, intron 2 of 36) HAL1|LINE|L1 42102 NM_001313741 51761 Hs.444957 NM_016529 ENSG00000132932 ATP8A2 ATP|ATPIB|CAMRQ4|IB|ML-1 ATPase phospholipid transporting 8A2 protein-coding 314-47 chr1 230029415 230029710 + 2 NA Intergenic Intergenic 26845 NR_135116 101927532 Hs.40183 NR_135116 ENSG00000228058 LINC01736 - long intergenic non-protein coding RNA 1736 ncRNA 304-526 chr8 108362344 108362592 + 2 NA Intergenic L1MC2|LINE|L1 -81115 NR_138033 9694 Hs.654351 NM_014673 ENSG00000104412 EMC2 KIAA0103|TTC35 ER membrane protein complex subunit 2 protein-coding 303-434 chr7 110554478 110554662 + 2 NA Intergenic Intergenic -536436 NM_001099660 54674 Hs.3781 NM_018334 ENSG00000173114 LRRN3 FIGLER5|NLRR-3|NLRR3 leucine rich repeat neuronal 3 protein-coding 583-153 chr7 64631729 64632231 + 2 NA Intergenic BSR/Beta|Satellite|Satellite -34103 NM_001282359 51427 Hs.50216 NM_016220 ENSG00000196247 ZNF107 Y8|ZFD25|ZNF588|smap-7 zinc finger protein 107 protein-coding 325-568 chr9 23951359 23951574 + 2 NA Intergenic L1ME3G|LINE|L1 -100865 NM_001351466 1993 Hs.166109 NM_004432 ENSG00000107105 ELAVL2 HEL-N1|HELN1|HUB ELAV like RNA binding protein 2 protein-coding 213-101 chr15 68986811 68986963 + 2 NA intron (NR_033672, intron 2 of 16) intron (NR_033672, intron 2 of 16) -27808 NM_024505 79400 Hs.657932 NM_024505 ENSG00000255346 NOX5 - NADPH oxidase 5 protein-coding 332-104 chr11 109060624 109060837 + 2 NA Intergenic MIRb|SINE|MIR -361460 NM_207645 399947 Hs.172982 NM_207645 ENSG00000185742 C11orf87 LOH11CR1A|NEURIM1 chromosome 11 open reading frame 87 protein-coding 404-96 chr14 47935835 47936120 + 2 NA Intergenic Intergenic -140963 NR_039996 100506433 Hs.547419 NR_039996 ENSG00000259129 LINC00648 - long intergenic non-protein coding RNA 648 ncRNA 506-221 chr5 8478441 8478866 + 2 NA Intergenic THE1C|LTR|ERVL-MaLR 17728 NR_039663 100616142 NR_039663 ENSG00000284000 MIR4458 mir-4458 microRNA 4458 ncRNA 344-405 chr5 161578813 161579002 + 2 NA Intergenic Intergenic -30503 NM_000813 2561 Hs.303527 NM_000813 ENSG00000145864 GABRB2 ICEE2 gamma-aminobutyric acid type A receptor beta2 subunit protein-coding 634-28 chr11 31135538 31136056 + 2 NA intron (NM_001367979, intron 10 of 38) intron (NM_001367979, intron 10 of 38) -143111 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding 219-384 chrX 54656266 54656461 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat 126144 NM_019067 54552 Hs.654677 NM_019067 ENSG00000130119 GNL3L GNL3B G protein nucleolar 3 like protein-coding 687-94 chr5 92038081 92038546 + 2 NA Intergenic L1M5|LINE|L1 -654996 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 575-84 chr2 88809413 88809835 + 2 NA Intergenic Intergenic -2746 NR_039635 100616399 NR_039635 ENSG00000265510 MIR4436A mir-4436a microRNA 4436a ncRNA 486-19 chr1 227990071 227990432 + 2 NA Intergenic L1M4|LINE|L1 -16747 NM_033131 89780 Hs.336930 NM_033131 ENSG00000154342 WNT3A - Wnt family member 3A protein-coding 339-33 chr1 175746706 175747012 + 2 NA Intergenic Intergenic -3264 NM_003285 7143 Hs.659864 NM_003285 ENSG00000116147 TNR TN-R tenascin R protein-coding 326-333 chr3 64385681 64385872 + 2 NA Intergenic Intergenic -117603 NM_001370528 166336 Hs.148105 NM_198859 ENSG00000163637 PRICKLE2 EPM5 prickle planar cell polarity protein 2 protein-coding 227-99 chr13 90630198 90630381 + 2 NA Intergenic Intergenic 137001 NR_120414 101927224 Hs.385801 NR_120414 LINC01049 - long intergenic non-protein coding RNA 1049 ncRNA 271-205 chr2 114424281 114424458 + 2 NA Intergenic Intergenic -18272 NM_001321910 57628 Hs.580539 NM_020868 ENSG00000175497 DPP10 DPL2|DPPY|DPRP-3|DPRP3 dipeptidyl peptidase like 10 protein-coding 145-3 chr1 155657874 155658011 + 2 NA Intergenic HERV4_I-int|LTR|ERV1 21313 NR_132762 106633810 NR_132762 SCARNA26A - small Cajal body-specific RNA 26A ncRNA 638-50 chr15 89740265 89740836 + 2 NA intron (NM_001284395, intron 16 of 16) AluSq2|SINE|Alu 10759 NM_018670 55897 Hs.447531 NM_018670 ENSG00000166823 MESP1 bHLHc5 mesoderm posterior bHLH transcription factor 1 protein-coding 983-7 chr18 71436444 71437409 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR 142030 NR_038325 100505776 Hs.202072 NR_038325 ENSG00000260676 LINC01541 UTAT39 long intergenic non-protein coding RNA 1541 ncRNA 321-36 chr1 232418596 232418824 + 2 NA intron (NM_020808, intron 16 of 20) intron (NM_020808, intron 16 of 20) 96898 NM_020808 57568 Hs.745009 NM_020808 ENSG00000116991 SIPA1L2 SPAL2|SPAR2 signal induced proliferation associated 1 like 2 protein-coding 483-117 chr2 82906026 82906423 + 2 NA Intergenic Intergenic 49421 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 280-66 chr10 130387012 130387265 + 2 NA Intergenic Intergenic 250729 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 306-504 chr8 76487973 76488253 + 2 NA intron (NR_105006, intron 3 of 5) MSTB2|LTR|ERVL-MaLR 81459 NR_105006 101926978 Hs.615028 NR_105006 ENSG00000254300 LINC01111 - long intergenic non-protein coding RNA 1111 ncRNA 167-78 chr3 102782565 102782719 + 2 NA Intergenic Intergenic 347627 NM_175056 131368 Hs.352213 NM_175056 ENSG00000170044 ZPLD1 - zona pellucida like domain containing 1 protein-coding 365-362 chr6 151798679 151798964 + 2 NA intron (NM_001122742, intron 2 of 9) intron (NM_001122742, intron 2 of 9) -6852 NM_001291230 2099 Hs.208124 NM_000125 ENSG00000091831 ESR1 ER|ESR|ESRA|ESTRR|Era|NR3A1 estrogen receptor 1 protein-coding 295-412 chr6 77226147 77226400 + 2 NA Intergenic L1M5|LINE|L1 237749 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 351-364 chr4 181206763 181206947 + 2 NA Intergenic Intergenic -47706 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 178-121 chr6 65422480 65422642 + 2 NA intron (NM_198283, intron 4 of 9) L1ME3A|LINE|L1 121143 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 328-564 chr8 79460346 79460611 + 2 NA Intergenic LTR81B|LTR|Gypsy 128290 NR_162137 113219456 NR_162137 MIR12123 - microRNA 12123 ncRNA 392-21 chr10 19421255 19421563 + 2 NA intron (NM_001142308, intron 28 of 39) intron (NM_001142308, intron 28 of 39) 307141 NR_120646 101928834 Hs.676482 NR_120646 ENSG00000233968 LOC101928834 - uncharacterized LOC101928834 ncRNA 177-74 chr2 99899899 99899998 + 2 NA intron (NM_001025108, intron 6 of 23) intron (NM_001025108, intron 6 of 23) 205635 NM_001025108 3899 Hs.444414 NM_002285 ENSG00000144218 AFF3 LAF4|MLLT2-like AF4/FMR2 family member 3 protein-coding 222-71 chr11 84088026 84088184 + 2 NA intron (NM_001142699, intron 10 of 27) L1MB7|LINE|L1 185175 NM_001142700 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 552-40 chr12 12822952 12823393 + 2 NA intron (NM_201224, intron 6 of 10) intron (NM_201224, intron 6 of 10) 9826 NM_016355 51202 Hs.719938 NM_016355 ENSG00000213782 DDX47 E4-DBP|HQ0256|MSTP162|RRP3 DEAD-box helicase 47 protein-coding 385-362 chr7 93188538 93188835 + 2 NA 3' UTR (NM_198151, exon 9 of 9) 3' UTR (NM_198151, exon 9 of 9) 30885 NM_001288810 253012 Hs.443169 NM_198151 ENSG00000188175 HEPACAM2 MIKI HEPACAM family member 2 protein-coding 381-33 chr1 240051064 240051298 + 2 NA Intergenic AluSz6|SINE|Alu -40702 NM_001305424 56776 Hs.24889 NM_020066 ENSG00000155816 FMN2 - formin 2 protein-coding 235-370 chr8 122291409 122291576 + 2 NA Intergenic L2c|LINE|L2 277152 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 203-188 chr5 132727870 132728026 + 2 NA intron (NM_007054, intron 2 of 16) intron (NM_007054, intron 2 of 16) 9598 NM_007054 11127 Hs.43670 NM_007054 ENSG00000131437 KIF3A FLA10|KLP-20 kinesin family member 3A protein-coding 293-18 chr1 179723267 179723441 + 2 NA Intergenic Intergenic -4422 NR_138088 148753 Hs.400696 NM_173509 ENSG00000143340 FAM163A C1orf76|NDSP family with sequence similarity 163 member A protein-coding 335-40 chr10 1647207 1647388 + 2 NA intron (NM_018702, intron 1 of 9) intron (NM_018702, intron 1 of 9) 90228 NM_018702 105 Hs.586663 NM_018702 ENSG00000185736 ADARB2 ADAR3|RED2 adenosine deaminase RNA specific B2 (inactive) protein-coding 308-16 chr1 79290021 79290288 + 2 NA Intergenic Intergenic -283424 NM_022159 64123 Hs.132314 NM_022159 ENSG00000162618 ADGRL4 ELTD1|ETL|KPG_003 adhesion G protein-coupled receptor L4 protein-coding 333-364 chr3 116944087 116944296 + 2 NA Intergenic L1PB3|LINE|L1 22760 NR_121607 100506724 Hs.125983 NR_121607 ENSG00000242385 LINC00901 LSAMP-AS4|TCONS_00005428 long intergenic non-protein coding RNA 901 ncRNA 181-76 chr2 187412564 187412739 + 2 NA intron (NM_005795, intron 1 of 14) intron (NM_005795, intron 1 of 14) 35601 NM_005795 10203 Hs.470882 NM_005795 ENSG00000064989 CALCRL CGRPR|CRLR calcitonin receptor like receptor protein-coding 248-214 chr2 222781536 222781686 + 2 NA Intergenic Intergenic -79425 NM_001354159 2181 Hs.655772 NM_004457 ENSG00000123983 ACSL3 ACS3|FACL3|LACS 3|LACS3|PRO2194 acyl-CoA synthetase long chain family member 3 protein-coding 329-542 chr7 67395841 67396060 + 2 NA Intergenic AluSz|SINE|Alu 59974 NR_108104 101929736 Hs.634050 NR_108104 ENSG00000106610 LINC01372 - long intergenic non-protein coding RNA 1372 ncRNA 442-88 chr15 27767316 27767616 + 2 NA intron (NM_001300984, intron 22 of 22) LTR12|LTR|ERV1 331849 NM_001300984 4948 Hs.654411 NM_000275 ENSG00000104044 OCA2 BEY|BEY1|BEY2|BOCA|D15S12|EYCL|EYCL2|EYCL3|HCL3|P|PED|SHEP1 OCA2 melanosomal transmembrane protein protein-coding 566-80 chr19 36631854 36632327 + 2 NA 3' UTR (NM_032825, exon 5 of 5) 3' UTR (NM_032825, exon 5 of 5) 26777 NM_001256838 84911 Hs.631591 NM_032825 ENSG00000161298 ZNF382 KS1 zinc finger protein 382 protein-coding 188-213 chr9 12704529 12704696 + 2 NA exon (NM_000550, exon 6 of 8) exon (NM_000550, exon 6 of 8) 11227 NM_000550 7306 Hs.270279 NM_000550 ENSG00000107165 TYRP1 CAS2|CATB|GP75|OCA3|TRP|TRP1|TYRP|b-PROTEIN tyrosinase related protein 1 protein-coding 684-66 chr20 43353969 43354648 + 2 NA Intergenic MER97a|DNA|hAT-Tip100 -103588 NM_006275 6431 Hs.684950 NM_006275 ENSG00000124193 SRSF6 B52|HEL-S-91|SFRS6|SRP55 serine and arginine rich splicing factor 6 protein-coding 398-154 chr2 40836380 40836607 + 2 NA Intergenic L2a|LINE|L2 -324058 NM_001112802 6546 Hs.31961 NM_021097 ENSG00000183023 SLC8A1 NCX1 solute carrier family 8 member A1 protein-coding 319-562 chr8 144539486 144539676 + 2 NA intron (NM_025251, intron 5 of 10) L1M5|LINE|L1 -10470 NM_001001795 414919 Hs.105685 NM_001001795 ENSG00000213563 C8orf82 - chromosome 8 open reading frame 82 protein-coding 292-130 chr14 20574615 20574878 + 2 NA Intergenic L1MEc|LINE|L1 -13478 NR_122043 254028 Hs.652569 NR_122043 ENSG00000258573 LOC254028 - uncharacterized LOC254028 ncRNA 393-20 chr1 165989671 165989880 + 2 NA Intergenic L2-3_Crp|LINE|L2 81854 NR_037431 100500832 NR_037431 ENSG00000283936 MIR3658 - microRNA 3658 ncRNA 448-117 chr2 120456699 120457019 + 2 NA Intergenic L1MDa|LINE|L1 9490 NR_027181 84931 Hs.334519 NM_032845 ENSG00000280409 LINC01101 - long intergenic non-protein coding RNA 1101 ncRNA 305-129 chr12 90401325 90401553 + 2 NA Intergenic L1MB2|LINE|L1 108121 NR_135018 105369893 Hs.577777 NR_135018 LINC02392 - long intergenic non-protein coding RNA 2392 ncRNA 158-103 chr6 127103306 127103404 + 2 NA Intergenic Intergenic -15316 NM_032784 84870 Hs.135254 NM_032784 ENSG00000146374 RSPO3 CRISTIN1|PWTSR|THSD2 R-spondin 3 protein-coding 261-97 chr14 36426465 36426697 + 2 NA Intergenic MIR3|SINE|MIR 86954 NR_161362 253970 Hs.509165 NM_001101341 ENSG00000229415 SFTA3 NANCI|SFTPH|SP-H|SPH surfactant associated 3 ncRNA 362-421 chr8 5268713 5268963 + 2 NA Intergenic Intergenic -273924 NM_033225 64478 Hs.571466 NM_033225 ENSG00000183117 CSMD1 PPP1R24 CUB and Sushi multiple domains 1 protein-coding 453-193 chr5 3925382 3925758 + 2 NA Intergenic Intergenic 329738 NM_024337 79192 Hs.424156 NM_024337 ENSG00000170549 IRX1 IRX-5|IRXA1 iroquois homeobox 1 protein-coding 442-153 chr2 236809883 236810187 + 2 NA Intergenic LOR1b|LTR|ERV1 240210 NM_020311 57007 Hs.471751 NM_020311 ENSG00000144476 ACKR3 CMKOR1|CXC-R7|CXCR-7|CXCR7|GPR159|RDC-1|RDC1 atypical chemokine receptor 3 protein-coding 411-142 chr2 48090505 48090763 + 2 NA Intergenic Intergenic -184841 NM_001190274 80204 Hs.352677 NM_012167 ENSG00000138081 FBXO11 FBX11|IDDFBA|PRMT9|UBR6|UG063H01|VIT1 F-box protein 11 protein-coding 201-26 chr10 22818348 22818462 + 2 NA Intergenic Intergenic -103827 NM_005028 5305 Hs.57079 NM_005028 ENSG00000150867 PIP4K2A PI5P4KA|PIP5K2A|PIP5KII-alpha|PIP5KIIA|PIPK phosphatidylinositol-5-phosphate 4-kinase type 2 alpha protein-coding 358-419 chr6 155309715 155310018 + 2 NA intron (NR_146725, intron 2 of 8) intron (NR_146725, intron 2 of 8) 4618 NM_016020 51106 Hs.279908 NM_016020 ENSG00000029639 TFB1M CGI-75|CGI75|mtTFB|mtTFB1 transcription factor B1, mitochondrial protein-coding 792-27 chr16 7276685 7277185 + 2 NA intron (NM_018723, intron 4 of 15) intron (NM_018723, intron 4 of 15) -55910 NM_145891 54715 Hs.459842 NM_018723 ENSG00000078328 RBFOX1 2BP1|A2BP1|FOX-1|FOX1|HRNBP1 RNA binding fox-1 homolog 1 protein-coding 311-31 chr1 193990032 193990228 + 2 NA Intergenic L1MA4|LINE|L1 685385 NR_125789 101929184 Hs.146728 NR_125789 ENSG00000232077 LINC01031 TCONS_00000361 long intergenic non-protein coding RNA 1031 ncRNA 299-355 chr5 21123848 21124047 + 2 NA Intergenic Intergenic -335533 NR_027026 728411 Hs.88181 NM_207331 ENSG00000183666 GUSBP1 - GUSB pseudogene 1 pseudo 315-503 chr8 139428246 139428481 + 2 NA Intergenic Intergenic 274760 NR_104210 51305 Hs.493037 NM_001282534 ENSG00000169427 KCNK9 K2p9.1|KT3.2|TASK-3|TASK3 potassium two pore domain channel subfamily K member 9 protein-coding 274-306 chr5 41200656 41200884 + 2 NA intron (NM_000065, intron 3 of 17) intron (NM_000065, intron 3 of 17) 12762 NM_000065 729 Hs.481992 NM_000065 ENSG00000039537 C6 - complement C6 protein-coding 269-241 chr22 50334516 50334707 + 2 NA Intergenic L1MB8|LINE|L1 -7599 NM_001001794 414918 Hs.530380 NM_001001794 ENSG00000205593 DENND6B AFI1B|FAM116B DENN domain containing 6B protein-coding 400-337 chr8 74214491 74214773 + 2 NA Intergenic L1M4|LINE|L1 106729 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 319-351 chr3 182713525 182713814 + 2 NA Intergenic L1PA16|LINE|L1 -79835 NM_014616 23200 Hs.478429 NM_014616 ENSG00000058063 ATP11B ATPIF|ATPIR ATPase phospholipid transporting 11B (putative) protein-coding 360-53 chr10 99248494 99248819 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -12781 NM_021828 60495 Hs.500750 NM_021828 ENSG00000172987 HPSE2 HPA2|HPR2|UFS|UFS1 heparanase 2 (inactive) protein-coding 289-361 chr5 9740654 9740925 + 2 NA intron (NR_027112, intron 5 of 12) intron (NR_027112, intron 5 of 12) -110438 NM_019599 50834 Hs.567492 NM_019599 ENSG00000169777 TAS2R1 T2R1|TRB7 taste 2 receptor member 1 protein-coding 215-45 chr11 9990955 9991078 + 2 NA intron (NM_030962, intron 12 of 39) intron (NM_030962, intron 12 of 39) 151874 NR_120539 101928008 Hs.585524 NR_120539 ENSG00000255476 LOC101928008 - uncharacterized LOC101928008 ncRNA 262-157 chr16 51067129 51067324 + 2 NA intron (NR_039672, intron 2 of 6) intron (NR_039672, intron 2 of 6) 49468 NR_110913 101927334 Hs.555184 NR_110913 ENSG00000261637 LINC02127 - long intergenic non-protein coding RNA 2127 ncRNA 335-294 chr20 42052494 42052702 + 2 NA Intergenic Intergenic -434221 NM_032221 84181 Hs.740645 NM_032221 ENSG00000124177 CHD6 CHD-6|CHD5|RIGB chromodomain helicase DNA binding protein 6 protein-coding 328-222 chr18 46579271 46579494 + 2 NA intron (NM_144612, intron 13 of 39) intron (NM_144612, intron 13 of 39) -20070 NM_001145472 125336 Hs.345877 NM_144612 ENSG00000167210 LOXHD1 DFNB77|LH2D1 lipoxygenase homology domains 1 protein-coding 209-175 chr20 58881228 58881403 + 2 NA intron (NR_126334, intron 3 of 4) intron (NR_126334, intron 3 of 4) -7098 NR_132273 2778 Hs.125898 NM_000516 ENSG00000087460 GNAS AHO|C20orf45|GNAS1|GPSA|GSA|GSP|NESP|PITA3|POH|SCG6|SgVI GNAS complex locus protein-coding 336-136 chr12 68086832 68087130 + 2 NA Intergenic L1MEd|LINE|L1 72759 NM_000619 3458 Hs.856 NM_000619 ENSG00000111537 IFNG IFG|IFI interferon gamma protein-coding 343-333 chr3 44069704 44069920 + 2 NA Intergenic Intergenic -44400 NR_029700 406929 NR_029700 ENSG00000207954 MIR138-1 MIRN138-1|mir-138-1 microRNA 138-1 ncRNA 201-105 chr19 29066570 29066740 + 2 NA Intergenic AluSx1|SINE|Alu 64100 NR_040036 100505835 Hs.176539 NR_040036 ENSG00000267014 LINC01532 - long intergenic non-protein coding RNA 1532 ncRNA 236-231 chr3 95475318 95475468 + 2 NA Intergenic (ATATGTATAT)n|Simple_repeat|Simple_repeat 207800 NR_077228 100287639 Hs.591320 NR_077228 ENSG00000244681 MTHFD2P1 - methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2, methenyltetrahydrofolate cyclohydrolase pseudogene 1 pseudo 458-234 chr7 37897961 37898367 + 2 NA intron (NM_016616, intron 17 of 17) L1PA8A|LINE|L1 18653 NM_003014 6424 Hs.658169 NM_003014 ENSG00000106483 SFRP4 FRP-4|FRPHE|FRZB-2|PYL|sFRP-4 secreted frizzled related protein 4 protein-coding 324-129 chr12 126048924 126049160 + 2 NA Intergenic Intergenic -46950 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 320-206 chr17 54917922 54918152 + 2 NA intron (NM_001321173, intron 7 of 9) intron (NM_001321173, intron 7 of 9) 17185 NM_005486 10040 Hs.153504 NM_005486 ENSG00000141198 TOM1L1 SRCASM target of myb1 like 1 membrane trafficking protein protein-coding 559-168 chr7 24069235 24069619 + 2 NA Intergenic Intergenic -214763 NM_000905 4852 Hs.1832 NM_000905 ENSG00000122585 NPY PYY4 neuropeptide Y protein-coding 557-145 chr4 20186625 20186998 + 2 NA Intergenic Intergenic -65094 NM_001289136 9353 Hs.29802 NM_004787 ENSG00000145147 SLIT2 SLIL3|Slit-2 slit guidance ligand 2 protein-coding 376-223 chr20 55540200 55540425 + 2 NA Intergenic Intergenic -113115 NR_110064 101927796 Hs.737040 NR_110064 ENSG00000224008 LINC01441 - long intergenic non-protein coding RNA 1441 ncRNA 493-174 chr2 234467077 234467460 + 2 NA Intergenic MLT1A|LTR|ERVL-MaLR -12673 NR_146988 105373934 Hs.471685 NR_146988 ENSG00000231682 LINC01891 - long intergenic non-protein coding RNA 1891 ncRNA 269-315 chr5 46066990 46067173 + 2 NA Intergenic ALR/Alpha|Satellite|centr -370701 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 710-82 chr6 64423233 64423642 + 2 NA intron (NM_001292009, intron 28 of 43) intron (NM_001292009, intron 28 of 43) 616601 NR_157848 112935969 NR_157848 SCAT8 EYS-AS1 S-phase cancer associated transcript 8 ncRNA 220-13 chr1 106540700 106540861 + 2 NA Intergenic L1MA8|LINE|L1 -277459 NR_147165 105378889 Hs.568674 NR_147165 ENSG00000237460 LINC01661 - long intergenic non-protein coding RNA 1661 ncRNA 309-536 chr8 68979106 68979351 + 2 NA intron (NR_039986, intron 2 of 4) L2a|LINE|L2 124962 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 311-515 chr8 112648577 112648797 + 2 NA intron (NM_001363185, intron 17 of 66) intron (NM_001363185, intron 17 of 66) 5194 NR_031745 100302225 NR_031745 ENSG00000238399 MIR2053 hsa-mir-2053 microRNA 2053 ncRNA 377-351 chr6 108592894 108593180 + 2 NA intron (NM_201559, intron 2 of 3) intron (NM_201559, intron 2 of 3) 32120 NM_001455 2309 Hs.220950 NM_001455 ENSG00000118689 FOXO3 AF6q21|FKHRL1|FKHRL1P2|FOXO2|FOXO3A forkhead box O3 protein-coding 402-136 chr19 53406997 53407362 + 2 NA intron (NR_146721, intron 3 of 7) intron (NR_146721, intron 3 of 7) 12030 NM_001040185 91661 Hs.657821 NM_001040185 ENSG00000196417 ZNF765 - zinc finger protein 765 protein-coding 244-350 chr7 95812501 95812676 + 2 NA intron (NM_001135557, intron 3 of 15) intron (NM_001135557, intron 3 of 15) 40082 NM_001278422 1780 Hs.440364 NM_004411 ENSG00000158560 DYNC1I1 DNCI1|DNCIC1 dynein cytoplasmic 1 intermediate chain 1 protein-coding 286-65 chr11 36151415 36151673 + 2 NA intron (NM_001304263, intron 3 of 4) MIRb|SINE|MIR -73643 NR_135064 101928510 Hs.675857 NR_135064 LOC101928510 - uncharacterized LOC101928510 ncRNA 176-58 chr2 98761251 98761404 + 2 NA non-coding (NR_126337, exon 4 of 4) non-coding (NR_126337, exon 4 of 4) 10571 NR_126337 101927070 Hs.469395 NR_126337 LINC02611 - long intergenic non-protein coding RNA 2611 ncRNA 142-25 chr14 86095801 86095902 + 2 NA intron (NR_110155, intron 2 of 3) intron (NR_110155, intron 2 of 3) 161173 NR_110155 101928767 Hs.536380 NR_110155 LINC02328 - long intergenic non-protein coding RNA 2328 ncRNA 373-97 chr12 126043413 126043617 + 2 NA Intergenic Intergenic -52477 NR_110053 101927464 Hs.443932 NR_110053 ENSG00000284848 LINC02359 - long intergenic non-protein coding RNA 2359 ncRNA 340-238 chr2 22150960 22151176 + 2 NA Intergenic L1PB4|LINE|L1 -385411 NR_110577 102723362 Hs.502887 NR_110577 ENSG00000233587 LINC01884 - long intergenic non-protein coding RNA 1884 ncRNA 368-449 chr8 68783957 68784261 + 2 NA intron (NR_146187, intron 11 of 13) L1MC3|LINE|L1 320081 NR_039986 100505718 Hs.122386 NR_039986 ENSG00000253658 LINC01592 - long intergenic non-protein coding RNA 1592 ncRNA 309-121 chr12 128529177 128529472 + 2 NA intron (NM_001136103, intron 2 of 8) L1MC5a|LINE|L1 235232 NR_037406 100500817 NR_037406 ENSG00000265635 MIR3612 - microRNA 3612 ncRNA 243-301 chr3 124246813 124247019 + 2 NA intron (NM_001024660, intron 3 of 59) intron (NM_001024660, intron 3 of 59) 113987 NR_049798 100847021 NR_049798 ENSG00000266383 MIR5002 - microRNA 5002 ncRNA 568-65 chr15 87932388 87932865 + 2 NA intron (NM_001320135, intron 14 of 15) MIR|SINE|MIR 13642 NR_162119 113218493 NR_162119 MIR11181 - microRNA 11181 ncRNA 485-186 chr3 104086827 104087128 + 2 NA Intergenic Intergenic -562861 NR_039611 100616336 NR_039611 ENSG00000265328 MIR548AB - microRNA 548ab ncRNA 173-32 chr14 19927295 19927432 + 2 NA Intergenic ERVL-E-int|LTR|ERVL 6756 NM_001005483 79317 Hs.554585 NM_001005483 ENSG00000176281 OR4K5 OR14-16 olfactory receptor family 4 subfamily K member 5 protein-coding 346-94 chr12 18614159 18614427 + 2 NA intron (NM_001288774, intron 31 of 32) intron (NM_001288774, intron 31 of 32) 123216 NM_001330769 89869 Hs.97542 NM_033123 ENSG00000139151 PLCZ1 NYD-SP27|PLC-zeta-1|PLCzeta|SPGF17 phospholipase C zeta 1 protein-coding 254-269 chr4 39488100 39488333 + 2 NA Intergenic HERV3-int|LTR|ERV1 7961 NR_026854 401127 Hs.383197 NR_026854 ENSG00000224097 LOC401127 - WD repeat domain 5 pseudogene pseudo 431-180 chr3 87373962 87374260 + 2 NA Intergenic L1MEf|LINE|L1 -97527 NM_000306 5449 Hs.591654 NM_000306 ENSG00000064835 POU1F1 CPHD1|GHF-1|PIT1|POU1F1a|Pit-1 POU class 1 homeobox 1 protein-coding 359-357 chr4 47189899 47190126 + 2 NA intron (NM_000812, intron 4 of 8) intron (NM_000812, intron 4 of 8) 158445 NM_000812 2560 Hs.27283 NM_000812 ENSG00000163288 GABRB1 EIEE45 gamma-aminobutyric acid type A receptor beta1 subunit protein-coding 334-248 chr2 23097203 23097432 + 2 NA Intergenic Intergenic -287862 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 387-162 chr2 32310087 32310414 + 2 NA 3' UTR (NM_032312, exon 6 of 6) 3' UTR (NM_032312, exon 6 of 6) 32346 NM_032312 84272 Hs.468099 NM_032312 ENSG00000119820 YIPF4 FinGER4|Nbla11189 Yip1 domain family member 4 protein-coding 380-274 chr4 34127727 34128032 + 2 NA intron (NR_147184, intron 2 of 3) L1MA3|LINE|L1 -87986 NR_125902 101928622 Hs.631687 NR_125902 ENSG00000250954 LOC101928622 - uncharacterized LOC101928622 ncRNA 422-34 chr10 66967404 66967675 + 2 NA intron (NM_178011, intron 2 of 2) intron (NM_178011, intron 2 of 2) 41503 NM_178011 347731 Hs.652155 NM_178011 ENSG00000198739 LRRTM3 - leucine rich repeat transmembrane neuronal 3 protein-coding 266-242 chr3 39859817 39859990 + 2 NA intron (NM_001284424, intron 1 of 15) L1MA9|LINE|L1 50243 NM_001284425 25924 Hs.594535 NM_015460 ENSG00000170011 MYRIP SLAC2-C|SLAC2C myosin VIIA and Rab interacting protein protein-coding 334-44 chr10 4508123 4508355 + 2 NA Intergenic AluSx1|SINE|Alu 101770 NR_108056 100507059 Hs.158438 NR_108054 ENSG00000224382 LINC00703 - long intergenic non-protein coding RNA 703 ncRNA 295-177 chr17 60966241 60966402 + 2 NA intron (NM_001330413, intron 14 of 25) L1MA4|LINE|L1 288470 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 273-365 chr5 121305936 121306173 + 2 NA Intergenic Intergenic -16496 NR_104999 102467226 NR_104999 LOC102467226 - uncharacterized LOC102467226 ncRNA 236-52 chr10 95419569 95419797 + 2 NA intron (NM_001034955, intron 6 of 30) intron (NM_001034955, intron 6 of 30) 21497 NM_006434 10580 Hs.38621 NM_006434 ENSG00000095637 SORBS1 CAP|FLAF2|R85FL|SH3D5|SH3P12|SORB1 sorbin and SH3 domain containing 1 protein-coding 219-126 chr16 74143282 74143445 + 2 NA Intergenic Intergenic 72158 NR_104657 101928035 Hs.39557 NR_104657 ENSG00000261404 LOC101928035 - uncharacterized LOC101928035 ncRNA 294-70 chr12 3582439 3582705 + 2 NA intron (NM_019854, intron 7 of 9) MER5A|DNA|hAT-Charlie -89753 NR_126055 100129223 Hs.586788 NR_126055 THCAT155 - thyroid cancer-associated transcript 155 ncRNA 198-118 chr2 50869550 50869728 + 2 NA intron (NM_001330093, intron 4 of 22) intron (NM_001330093, intron 4 of 22) 162493 NM_001330081 9378 Hs.637685 NM_004801 ENSG00000179915 NRXN1 Hs.22998|PTHSL2|SCZD17 neurexin 1 protein-coding 426-278 chr7 114079495 114079880 + 2 NA Intergenic Intergenic -6640 NR_033766 93986 Hs.282787 NM_014491 ENSG00000128573 FOXP2 CAGH44|SPCH1|TNRC10 forkhead box P2 protein-coding 503-91 chr14 27156305 27156655 + 2 NA Intergenic Intergenic 247838 NR_036193 100423019 NR_036193 ENSG00000265165 MIR4307 - microRNA 4307 ncRNA 224-197 chr3 51591467 51591643 + 2 NA intron (NM_001322253, intron 4 of 23) intron (NM_001322253, intron 4 of 23) 49966 NM_001322257 23132 Hs.105399 NM_015106 ENSG00000164080 RAD54L2 ARIP4|HSPC325|SRISNF2L RAD54 like 2 protein-coding 227-38 chr10 57705994 57706214 + 2 NA Intergenic MER67C|LTR|ERV1 -401545 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 297-454 chr8 15939415 15939620 + 2 NA Intergenic Intergenic 246755 NM_001363744 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 380-379 chr8 30022001 30022226 + 2 NA Intergenic L1MB5|LINE|L1 60951 NM_016127 51669 Hs.521487 NM_016127 ENSG00000133872 SARAF FOAP-7|HSPC035|TMEM66|XTP3 store-operated calcium entry associated regulatory factor protein-coding 223-282 chr5 92789862 92790031 + 2 NA Intergenic L1PREC2|LINE|L1 781397 NR_109825 441094 Hs.457407 NR_015369 ENSG00000237187 NR2F1-AS1 - NR2F1 antisense RNA 1 ncRNA 307-243 chr2 102347839 102348084 + 2 NA exon (NM_016232, exon 9 of 11) exon (NM_016232, exon 9 of 11) -7835 NM_001371419 487-186 chr3 70479937 70480298 + 2 NA Intergenic MER103C|DNA|hAT-Charlie -167479 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 398-44 chr10 83106276 83106516 + 2 NA Intergenic Intergenic 570693 NR_134317 105378397 Hs.147725 NR_134317 LINC02650 - long intergenic non-protein coding RNA 2650 ncRNA 212-249 chr4 180622922 180623095 + 2 NA Intergenic Intergenic 536141 NR_033918 728081 Hs.535735 NR_033918 ENSG00000248197 LINC00290 NCRNA00290 long intergenic non-protein coding RNA 290 ncRNA 293-218 chr2 198009003 198009164 + 2 NA intron (NM_006226, intron 1 of 5) L1MB2|LINE|L1 204490 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 294-85 chr12 55597650 55597865 + 2 NA Intergenic AluJr4|SINE|Alu 23342 NM_001258285 121129 Hs.742584 NM_001258285 ENSG00000179615 OR2AP1 OR2AP1P olfactory receptor family 2 subfamily AP member 1 protein-coding 341-245 chr2 61648373 61648589 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR -110125 NM_003400 7514 Hs.370770 NM_003400 ENSG00000082898 XPO1 CRM-1|CRM1|emb|exp1 exportin 1 protein-coding 247-242 chr21 21960271 21960511 + 2 NA Intergenic L1MA4|LINE|L1 138068 NR_109959 101927843 Hs.652879 NR_109959 ENSG00000233215 LINC01687 - long intergenic non-protein coding RNA 1687 ncRNA 230-385 chr8 121195457 121195629 + 2 NA Intergenic Intergenic -383497 NM_021021 6641 Hs.46701 NM_021021 ENSG00000172164 SNTB1 59-DAP|A1B|BSYN2|DAPA1B|SNT2|SNT2B1|TIP-43 syntrophin beta 1 protein-coding 498-158 chr22 34896422 34896823 + 2 NA intron (NR_138042, intron 3 of 4) L1ME4c|LINE|L1 101294 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 376-44 chr10 43989674 43989885 + 2 NA Intergenic L1P1|LINE|L1 77377 NR_136148 283033 Hs.178244 NR_033846 LINC00841 - long intergenic non-protein coding RNA 841 ncRNA 354-471 chr8 111890690 111890993 + 2 NA Intergenic Intergenic 514202 NR_146282 105375706 Hs.566832 NR_146282 ENSG00000253434 LINC02237 - long intergenic non-protein coding RNA 2237 ncRNA 362-81 chr10 130425050 130425288 + 2 NA Intergenic Intergenic 288760 NM_001321980 10539 Hs.42644 NM_006541 ENSG00000108010 GLRX3 GLRX4|GRX3|GRX4|PICOT|TXNL2|TXNL3 glutaredoxin 3 protein-coding 194-51 chr13 102945509 102945637 + 2 NA Intergenic Intergenic 65474 NR_026965 121952 Hs.660773 NR_026965 ENSG00000250878 METTL21EP METTL21CP1 methyltransferase like 21E, pseudogene pseudo 324-177 chr15 53995832 53996139 + 2 NA intron (NM_001329919, intron 1 of 31) (TTGT)n|Simple_repeat|Simple_repeat -16663 NM_001080534 440279 Hs.657273 NM_001080534 ENSG00000137766 UNC13C - unc-13 homolog C protein-coding 399-47 chr11 7510765 7511146 + 2 NA 3' UTR (NM_001370499, exon 3 of 3) 3' UTR (NM_001370499, exon 3 of 3) -2810 NR_147792 8495 Hs.655714 NM_003621 ENSG00000166387 PPFIBP2 Cclp1 PPFIA binding protein 2 protein-coding 172-21 chr10 125513193 125513359 + 2 NA Intergenic Intergenic -61095 NR_023362 100169752 Hs.652647 NR_023362 ENSG00000237675 TEX36-AS1 - TEX36 antisense RNA 1 ncRNA 314-525 chr7 27333950 27334166 + 2 NA Intergenic Charlie22a|DNA|hAT-Charlie -86829 NR_120507 101410536 Hs.687800 NR_120507 ENSG00000253405 EVX1-AS EVX1-AS1 EVX1 antisense RNA ncRNA 362-236 chr2 167289654 167289879 + 2 NA Intergenic Intergenic 102394 NM_001199144 129446 Hs.73680 NM_152381 ENSG00000163092 XIRP2 CMYA3 xin actin binding repeat containing 2 protein-coding 545-44 chr11 93185123 93185581 + 2 NA intron (NM_152313, intron 2 of 10) intron (NM_152313, intron 2 of 10) 12074 NM_001286139 120103 Hs.148766 NM_152313 ENSG00000180773 SLC36A4 PAT4 solute carrier family 36 member 4 protein-coding 317-261 chr2 197961351 197961572 + 2 NA intron (NM_006226, intron 1 of 5) intron (NM_006226, intron 1 of 5) 156868 NM_006226 5334 Hs.153322 NM_006226 ENSG00000115896 PLCL1 PLCE|PLCL|PLDL1|PPP1R127|PRIP phospholipase C like 1 (inactive) protein-coding 369-290 chr4 46712906 46713169 + 2 NA Intergenic L1M5|LINE|L1 196208 NM_130902 170712 Hs.479656 NM_130902 ENSG00000170516 COX7B2 - cytochrome c oxidase subunit 7B2 protein-coding 345-287 chr2 145091468 145091762 + 2 NA Intergenic Intergenic 423648 NR_033870 401014 Hs.742290 NR_033870 ENSG00000226674 TEX41 DKFZp686O1327|LINC00953 testis expressed 41 ncRNA 504-186 chr4 65285461 65285817 + 2 NA Intergenic Intergenic -281139 NR_033976 401134 Hs.165899 NR_033976 ENSG00000250125 LINC02232 - long intergenic non-protein coding RNA 2232 ncRNA 243-391 chr6 77211240 77211399 + 2 NA Intergenic Intergenic 252703 NM_000863 3351 Hs.123016 NM_000863 ENSG00000135312 HTR1B 5-HT-1B|5-HT-1D-beta|5-HT1B|5-HT1DB|HTR1D2|HTR1DB|S12 5-hydroxytryptamine receptor 1B protein-coding 330-255 chr2 43109486 43109683 + 2 NA Intergenic Intergenic -7139 NR_151714 100506047 Hs.127112 NR_151714 LINC02580 - long intergenic non-protein coding RNA 2580 ncRNA 501-31 chr10 107821761 107822147 + 2 NA Intergenic MIRb|SINE|MIR 247339 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 420-138 chr2 73496207 73496502 + 2 NA intron (NM_015120, intron 10 of 22) L1MC4a|LINE|L1 39251 NR_046762 100874291 Hs.668279 NR_046762 ENSG00000230002 ALMS1-IT1 - ALMS1 intronic transcript 1 ncRNA 391-387 chrX 74830952 74831248 + 2 NA intron (NM_001008537, intron 1 of 3) L1MA2|LINE|L1 94352 NM_001008537 340533 Hs.124128 NM_001008537 ENSG00000050030 NEXMIF KIAA2022|KIDLIA|MRX98|XPN neurite extension and migration factor protein-coding 410-113 chr18 45138766 45139133 + 2 NA Intergenic AluJo|SINE|Alu -29014 NM_001371319 399-287 chr7 83240481 83240838 + 2 NA Intergenic (TATGTA)n|Simple_repeat|Simple_repeat -77775 NM_014510 27445 Hs.12376 NM_014510 ENSG00000186472 PCLO ACZ|PCH3 piccolo presynaptic cytomatrix protein protein-coding 314-16 chr1 75089347 75089510 + 2 NA Intergenic Intergenic -39006 NM_001001933 431707 Hs.403934 NM_001001933 ENSG00000162624 LHX8 LHX7 LIM homeobox 8 protein-coding 686-41 chr2 64804778 64805121 + 2 NA Intergenic Kanga2_a|DNA|TcMar-Tc2 58682 NR_110224 101927438 Hs.580313 NR_110224 ENSG00000234572 LINC01800 - long intergenic non-protein coding RNA 1800 ncRNA 771-54 chr3 68579605 68580187 + 2 NA Intergenic Intergenic 79259 NR_135532 105377146 Hs.567895 NR_135532 LOC105377146 - uncharacterized LOC105377146 ncRNA 515-244 chr7 10725749 10726090 + 2 NA intron (NR_147499, intron 1 of 2) intron (NR_147499, intron 1 of 2) 23243 NR_149037 100131472 Hs.170681 NR_149037 LOC100131472 - uncharacterized LOC100131472 ncRNA 310-57 chr10 105188823 105189065 + 2 NA intron (NM_014978, intron 14 of 26) intron (NM_014978, intron 14 of 26) -522728 NR_104028 100505890 Hs.348526 NR_104028 ENSG00000226387 SORCS3-AS1 - SORCS3 antisense RNA 1 ncRNA 390-380 chr8 87237667 87237981 + 2 NA intron (NM_173538, intron 6 of 10) intron (NM_173538, intron 6 of 10) 371409 NM_173538 168975 Hs.246284 NM_173538 ENSG00000176571 CNBD1 - cyclic nucleotide binding domain containing 1 protein-coding 389-322 chr6 111921934 111922156 + 2 NA Intergenic Intergenic -12648 NR_149099 105377946 NR_149099 LINC02527 - long intergenic non-protein coding RNA 2527 ncRNA 239-142 chr18 10391174 10391380 + 2 NA Intergenic L1MCa|LINE|L1 23093 NR_110775 101927350 Hs.572523 NR_110775 ENSG00000260913 LINC01254 - long intergenic non-protein coding RNA 1254 ncRNA 227-265 chr4 119958155 119958361 + 2 NA intron (NR_121639, intron 1 of 1) intron (NR_121639, intron 1 of 1) 18718 NR_121639 100996694 Hs.119926 NR_121639 ENSG00000250392 LINC02502 - long intergenic non-protein coding RNA 2502 ncRNA 216-120 chr16 4029312 4029428 + 2 NA intron (NM_001116, intron 2 of 10) L1ME3A|LINE|L1 -78926 NR_120311 102724927 Hs.364739 NR_120311 ENSG00000262185 LOC102724927 - uncharacterized LOC102724927 ncRNA 328-413 chr4 103003544 103003842 + 2 NA intron (NR_047515, intron 1 of 10) L1PA13|LINE|L1 16012 NM_139173 150159 Hs.666728 NM_139173 ENSG00000164037 SLC9B1 NHA1|NHEDC1 solute carrier family 9 member B1 protein-coding 481-215 chr4 42195380 42195680 + 2 NA Intergenic AluY|SINE|Alu -42875 NM_207406 389206 Hs.120591 NM_207406 ENSG00000188848 BEND4 CCDC4 BEN domain containing 4 protein-coding 132-56 chr4 126346076 126346161 + 2 NA Intergenic Intergenic 838859 NR_031746 100302267 NR_031746 ENSG00000283550 MIR2054 hsa-mir-2054 microRNA 2054 ncRNA 356-493 chr8 134239532 134239752 + 2 NA Intergenic Intergenic 353146 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 494-140 chr2 178076221 178076652 + 2 NA intron (NM_001077197, intron 2 of 20) MIR|SINE|MIR -3659 NM_016953 50940 Hs.570273 NM_016953 ENSG00000128655 PDE11A PPNAD2 phosphodiesterase 11A protein-coding 349-331 chr3 83444449 83444626 + 2 NA Intergenic L1M5|LINE|L1 1425038 NR_033860 440970 Hs.411049 NR_033860 ENSG00000242641 LINC00971 - long intergenic non-protein coding RNA 971 ncRNA 334-211 chr17 62866709 62867024 + 2 NA Intergenic LTR16C|LTR|ERVL 58364 NR_135634 101927877 Hs.434615 NR_135634 ENSG00000265000 MARCH10-DT - MARCH10 divergent transcript ncRNA 261-15 chr1 90689490 90689710 + 2 NA Intergenic Intergenic 27702 NM_020063 343472 Hs.451956 NM_020063 ENSG00000143032 BARHL2 - BarH like homeobox 2 protein-coding 244-183 chr2 201519718 201519892 + 2 NA intron (NM_001168216, intron 11 of 12) L1MA7|LINE|L1 68065 NM_018571 55437 Hs.652338 NM_018571 ENSG00000082146 STRADB ALS2CR2|CALS-21|ILPIP|ILPIPA|PAPK|PRO1038 STE20 related adaptor beta protein-coding 387-96 chr13 56221237 56221548 + 2 NA Intergenic Intergenic -919526 NM_198441 122183 Hs.525056 NM_198441 ENSG00000204919 PRR20A PRR20|PRR20B|PRR20C|PRR20D|PRR20E proline rich 20A protein-coding 492-54 chr12 8796322 8796705 + 2 NA Intergenic MSTA-int|LTR|ERVL-MaLR -26108 NM_144670 144568 Hs.620532 NM_144670 ENSG00000166535 A2ML1 CPAMD9|OMS|p170 alpha-2-macroglobulin like 1 protein-coding 321-470 chr5 98255577 98255796 + 2 NA Intergenic L1PREC2|LINE|L1 -94447 NR_146477 105379098 Hs.566306 NR_146477 LINC01846 - long intergenic non-protein coding RNA 1846 ncRNA 274-319 chr5 124767841 124768006 + 2 NA Intergenic Intergenic -22811 NM_020747 57507 Hs.266616 NM_020747 ENSG00000168916 ZNF608 NY-REN-36 zinc finger protein 608 protein-coding 218-24 chr10 34100028 34100179 + 2 NA Intergenic L1ME4a|LINE|L1 -327423 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 336-173 chr15 37841444 37841741 + 2 NA Intergenic MSTB2|LTR|ERVL-MaLR -93015 NM_001330255 145942 Hs.179646 NM_152453 ENSG00000166069 TMCO5A TMCO5 transmembrane and coiled-coil domains 5A protein-coding 377-14 chr1 105260722 105261072 + 2 NA Intergenic L1MA8|LINE|L1 358038 NR_125954 101928476 Hs.563856 NR_125954 ENSG00000230768 LINC01676 - long intergenic non-protein coding RNA 1676 ncRNA 783-56 chr5 5693117 5693712 + 2 NA Intergenic Intergenic 270737 NM_015325 23379 Hs.449296 NM_015325 ENSG00000164151 ICE1 KIAA0947 interactor of little elongation complex ELL subunit 1 protein-coding 187-47 chr14 50117629 50117763 + 2 NA 3' UTR (NM_006939, exon 23 of 23) 3' UTR (NM_006939, exon 23 of 23) -1124 NM_024558 79609 Hs.558541 NM_024558 ENSG00000100483 VCPKMT C14orf138|METTL21D|VCP-KMT valosin containing protein lysine methyltransferase protein-coding 270-201 chr2 217115370 217115602 + 2 NA Intergenic Intergenic -167247 NR_133642 105373877 NR_133642 DIRC3-AS1 - DIRC3 antisense RNA 1 ncRNA 394-265 chr5 45471617 45471867 + 2 NA intron (NM_021072, intron 2 of 7) intron (NM_021072, intron 2 of 7) 224638 NM_021072 348980 Hs.353176 NM_021072 ENSG00000164588 HCN1 BCNG-1|BCNG1|EIEE24|HAC-2 hyperpolarization activated cyclic nucleotide gated potassium channel 1 protein-coding 356-317 chr3 28538400 28538640 + 2 NA Intergenic MER70A|LTR|ERVL -36758 NR_038840 645206 Hs.376725 NR_038840 LINC00693 - long intergenic non-protein coding RNA 693 ncRNA 309-470 chr6 36570186 36570453 + 2 NA Intergenic MER30|DNA|hAT-Charlie -22840 NM_001305102 11329 Hs.409578 NM_007271 ENSG00000112079 STK38 NDR|NDR1 serine/threonine kinase 38 protein-coding 302-490 chr9 132658057 132658356 + 2 NA 3' UTR (NM_001322344, exon 7 of 7) 3' UTR (NM_001322344, exon 7 of 7) 5120 NM_001322343 64794 Hs.660767 NM_022779 ENSG00000125485 DDX31 PPP1R25 DEAD-box helicase 31 protein-coding 227-178 chr2 106687635 106687828 + 2 NA Intergenic L1MD2|LINE|L1 198297 NR_136313 84620 Hs.98265 NM_032528 ENSG00000144057 ST6GAL2 SIAT2|ST6GalII ST6 beta-galactoside alpha-2,6-sialyltransferase 2 protein-coding 164-23 chr11 105690839 105690955 + 2 NA intron (NR_046356, intron 2 of 16) intron (NR_046356, intron 2 of 16) 80191 NR_046356 2893 Hs.503743 NM_000829 ENSG00000152578 GRIA4 GLUR4|GLUR4C|GLURD|GluA4|NEDSGA glutamate ionotropic receptor AMPA type subunit 4 protein-coding 304-360 chr3 162322150 162322432 + 2 NA Intergenic L1M4|LINE|L1 825483 NM_001080440 131149 Hs.585021 NM_001080440 ENSG00000182447 OTOL1 C1QTNF15|C1QTNF16 otolin 1 protein-coding 245-230 chr3 70477877 70478046 + 2 NA Intergenic Intergenic -165323 NM_001364676 107986096 NM_001364676 ENSG00000242120 MDFIC2 - MyoD family inhibitor domain containing 2 protein-coding 296-205 chr19 43964065 43964241 + 2 NA intron (NM_013359, intron 3 of 5) intron (NM_013359, intron 3 of 5) 12908 NM_013359 7638 Hs.631598 NM_013359 ENSG00000159905 ZNF221 - zinc finger protein 221 protein-coding 377-123 chr14 60180964 60181261 + 2 NA Intergenic MIR|SINE|MIR -11248 NM_001322280 51635 Hs.59719 NM_016029 ENSG00000100612 DHRS7 CGI-86|SDR34C1|retDSR4|retSDR4 dehydrogenase/reductase 7 protein-coding 433-161 chr21 25185661 25186007 + 2 NA Intergenic Intergenic 245867 NR_024027 54072 Hs.234016 NM_058184 ENSG00000185433 LINC00158 C21orf42|NCRNA00158 long intergenic non-protein coding RNA 158 ncRNA 507-119 chr2 32887947 32888354 + 2 NA intron (NR_027099, intron 7 of 10) L1MC3|LINE|L1 -38977 NR_027097 285045 Hs.434660 NR_027097 ENSG00000230876 LINC00486 - long intergenic non-protein coding RNA 486 ncRNA 357-130 chr15 59167072 59167270 + 2 NA intron (NM_004998, intron 22 of 27) intron (NM_004998, intron 22 of 27) 4091 NR_031750 100313886 NR_031750 ENSG00000253030 MIR2116 mir-2116 microRNA 2116 ncRNA 238-119 chr15 86003124 86003300 + 2 NA Intergenic L2a|LINE|L2 -76408 NM_152336 123624 Hs.31795 NM_152336 ENSG00000273540 AGBL1 CCP4|FECD8 ATP/GTP binding protein like 1 protein-coding 243-3 chr1 14494218 14494372 + 2 NA Intergenic L2c|LINE|L2 -74322 NR_149058 105376762 Hs.568591 NR_149058 KAZN-AS1 - KAZN antisense RNA 1 ncRNA 233-180 chr2 133704554 133704713 + 2 NA Intergenic Intergenic -136170 NM_207363 344148 Hs.537329 NM_207363 ENSG00000176771 NCKAP5 ERIH1|ERIH2|NAP5 NCK associated protein 5 protein-coding 426-282 chr8 20785444 20785813 + 2 NA Intergenic MLT1I|LTR|ERVL-MaLR -168005 NR_130774 102467222 Hs.444226 NR_130773 ENSG00000253147 LOC102467222 - uncharacterized LOC102467222 ncRNA 381-174 chr19 53247542 53247737 + 2 NA intron (NM_001317998, intron 3 of 4) L1M4|LINE|L1 7211 NM_001317998 342926 Hs.20506 NM_182609 ENSG00000197928 ZNF677 - zinc finger protein 677 protein-coding 208-106 chr19 36905004 36905158 + 2 NA intron (NM_001037232, intron 5 of 5) intron (NM_001037232, intron 5 of 5) 10958 NM_001171979 374899 Hs.720312 NM_001037232 ENSG00000185869 ZNF829 - zinc finger protein 829 protein-coding 312-425 chr5 105977865 105978156 + 2 NA Intergenic MER39|LTR|ERV1 878536 NR_000039 9366 Hs.158296 NR_000039 ENSG00000232159 RAB9BP1 RAB9P1 RAB9B, member RAS oncogene family pseudogene 1 pseudo 200-64 chr13 55292938 55293094 + 2 NA Intergenic Intergenic 118562 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 261-202 chr2 175785398 175785644 + 2 NA Intergenic L1ME4b|LINE|L1 216746 NM_001305011 80856 Hs.209561 NM_030650 ENSG00000144320 LNPK KIAA1715|LNP|LNP1|NEDEHCC|Ul|ulnaless lunapark, ER junction formation factor protein-coding 313-503 chr7 63137155 63137375 + 2 NA Intergenic L1MA8|LINE|L1 166791 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 221-183 chr3 37244688 37244890 + 2 NA promoter-TSS (NR_149029) promoter-TSS (NR_149029) -594 NR_149029 152048 Hs.596176 NM_152532 ENSG00000270194 LOC152048 - uncharacterized FLJ31715 ncRNA 173-97 chr3 178585264 178585409 + 2 NA intron (NM_001278911, intron 1 of 4) intron (NM_001278911, intron 1 of 4) 26486 NM_001278911 10242 Hs.478368 NM_005832 ENSG00000197584 KCNMB2 - potassium calcium-activated channel subfamily M regulatory beta subunit 2 protein-coding 192-55 chr12 127523198 127523388 + 2 NA Intergenic L1MC4|LINE|L1 113174 NR_120451 101927637 Hs.170413 NR_120451 ENSG00000256022 LINC02411 - long intergenic non-protein coding RNA 2411 ncRNA 283-364 chr5 67175221 67175453 + 2 NA Intergenic Intergenic 21462 NM_005582 4064 Hs.87205 NM_005582 ENSG00000134061 CD180 LY64|Ly78|RP105 CD180 molecule protein-coding 292-350 chr5 54593492 54593695 + 2 NA Intergenic L1ME1|LINE|L1 75834 NM_052870 112574 Hs.432755 NM_052870 ENSG00000178996 SNX18 SH3PX2|SH3PXD3B|SNAG1 sorting nexin 18 protein-coding 228-340 chr8 96002755 96002934 + 2 NA Intergenic Intergenic -54496 NR_036611 100500773 Hs.741582 NR_036611 LOC100500773 - serine and arginine rich splicing factor 3 pseudogene pseudo 444-129 chr2 199757075 199757434 + 2 NA Intergenic Intergenic 93919 NM_001350855 348751 Hs.734578 NM_001350853 ENSG00000226124 FTCDNL1 FONG formiminotransferase cyclodeaminase N-terminal like protein-coding 242-121 chr15 93211836 93212076 + 2 NA Intergenic Intergenic 5890 NM_001365393 105370980 NM_001365393 LOC105370980 - putative uncharacterized protein UNQ9370/PRO34162 protein-coding 500-109 chr18 1480671 1481040 + 2 NA Intergenic L1M1|LINE|L1 -121226 NR_110327 56651 Hs.541165 NM_031416 LINC00470 C18orf2 long intergenic non-protein coding RNA 470 ncRNA 327-231 chr2 3951933 3952207 + 2 NA Intergenic L2a|LINE|L2 21962 NR_037881 100505964 Hs.190267 NR_037881 ENSG00000237401 LINC01304 - long intergenic non-protein coding RNA 1304 ncRNA 292-456 chr9 25002431 25002716 + 2 NA Intergenic L1PA13|LINE|L1 -456676 NM_001365008 100129669 Hs.573530 NM_001271706 ENSG00000205442 IZUMO3 C9orf134|bA20A20.1 IZUMO family member 3 protein-coding 513-289 chr8 135410006 135410367 + 2 NA Intergenic L1MB3|LINE|L1 -47270 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 289-158 chr15 94885184 94885362 + 2 NA Intergenic L1M5|LINE|L1 29910 NR_077061 440311 Hs.745156 NR_077061 ENSG00000277654 LOC440311 - NOP53 ribosome biogenesis factor pseudogene pseudo 460-50 chr11 84344748 84345098 + 2 NA intron (NM_001142699, intron 7 of 27) intron (NM_001142699, intron 7 of 27) -27584 NM_001206769 1740 Hs.367656 NM_001364 ENSG00000150672 DLG2 PPP1R58|PSD-93|PSD93|chapsyn-110 discs large MAGUK scaffold protein 2 protein-coding 350-238 chr2 118510648 118510853 + 2 NA Intergenic Intergenic 92216 NR_110272 101927709 Hs.274529 NR_110272 LOC101927709 - uncharacterized LOC101927709 ncRNA 392-189 chr22 34412105 34412447 + 2 NA Intergenic L1MC4a|LINE|L1 -489388 NM_001362953 9215 Hs.474667 NM_004737 ENSG00000133424 LARGE1 LARGE|MDC1D|MDDGA6|MDDGB6 LARGE xylosyl- and glucuronyltransferase 1 protein-coding 435-242 chr8 89753704 89754132 + 2 NA intron (NR_125822, intron 1 of 4) (AT)n|Simple_repeat|Simple_repeat 3793 NR_125822 101929709 Hs.651324 NR_125822 ENSG00000251136 LOC101929709 - uncharacterized LOC101929709 ncRNA 282-36 chr10 24107900 24108128 + 2 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -100777 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 378-73 chr11 4559647 4559927 + 2 NA Intergenic L1PA8|LINE|L1 14596 NM_001004137 119772 Hs.553567 NM_001004137 ENSG00000197790 OR52M1 OR11-11|OR52M1P|OR52M3P olfactory receptor family 52 subfamily M member 1 protein-coding 482-296 chr9 92832501 92832829 + 2 NA intron (NR_026868, intron 8 of 9) L1MA4A|LINE|L1 23054 NR_026868 138649 Hs.643597 NM_001010925 ENSG00000187984 ANKRD19P ANKRD19|bA526D8.2 ankyrin repeat domain 19, pseudogene pseudo 186-34 chr12 40861160 40861271 + 2 NA intron (NM_001256064, intron 1 of 15) intron (NM_001256064, intron 1 of 15) 33277 NM_001256064 1272 Hs.143434 NM_001843 ENSG00000018236 CNTN1 F3|GP135|MYPCN contactin 1 protein-coding 230-59 chr11 40029856 40030057 + 2 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 263174 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 584-7 chr1 65764434 65764873 + 2 NA Intergenic Intergenic -27857 NM_001297440 5142 Hs.198072 NM_002600 ENSG00000184588 PDE4B DPDE4|PDEIVB phosphodiesterase 4B protein-coding 185-46 chr12 33634816 33634965 + 2 NA Intergenic Intergenic -195071 NM_198992 341359 Hs.118703 NM_198992 ENSG00000110975 SYT10 - synaptotagmin 10 protein-coding 223-228 chr3 137835868 137836044 + 2 NA Intergenic Intergenic 64045 NR_109987 100507274 Hs.360349 NR_109987 ENSG00000239513 LINC01210 - long intergenic non-protein coding RNA 1210 ncRNA 206-197 chr5 4430338 4430502 + 2 NA Intergenic L1MCa|LINE|L1 -343061 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 464-77 chr15 86645121 86645565 + 2 NA intron (NM_152336, intron 22 of 24) L1MC4|LINE|L1 -287537 NR_135682 105370954 Hs.668501 NR_135682 ENSG00000259636 LOC105370954 - uncharacterized LOC105370954 ncRNA 473-284 chr8 130238598 130238874 + 2 NA intron (NM_001362925, intron 3 of 29) MIRb|SINE|MIR 57797 NR_002765 29065 Hs.639318 NR_002765 ASAP1-IT1 ASAP1-IT|ASAP1IT|ASAP1IT1|DDEF1IT1|HSPC054|NCRNA00050 ASAP1 intronic transcript 1 ncRNA 270-7 chr1 40875967 40876186 + 2 NA Intergenic Intergenic -13713 NM_133467 163732 Hs.355820 NM_133467 ENSG00000179862 CITED4 - Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 4 protein-coding 204-84 chr14 39254465 39254641 + 2 NA TTS (NM_054024) TTS (NM_054024) -10738 NM_203354 4253 Hs.287694 NM_005930 ENSG00000150527 MIA2 CTAGE5|MEA6|MGEA|MGEA11|MGEA6|TALI MIA SH3 domain ER export factor 2 protein-coding 252-304 chr4 103349026 103349271 + 2 NA Intergenic L2c|LINE|L2 -75894 NR_125925 101929448 Hs.570839 NR_125925 ENSG00000248740 LINC02428 - long intergenic non-protein coding RNA 2428 ncRNA 284-386 chr7 94267623 94267785 + 2 NA Intergenic tRNA-Cys-TGY|tRNA|tRNA 124488 NR_147206 101927525 Hs.571263 NR_147206 COL1A2-AS1 TCONS_00013888|lncRNA8975-1 COL1A2 antisense RNA 1 ncRNA 188-114 chr20 24713164 24713331 + 2 NA Intergenic L1PBa|LINE|L1 -236022 NM_003650 8530 Hs.143212 NM_003650 ENSG00000077984 CST7 CMAP cystatin F protein-coding 320-177 chr15 91079882 91080067 + 2 NA Intergenic L1MC1|LINE|L1 -19614 NM_001323031 9899 Hs.21754 NM_014848 ENSG00000185518 SV2B HsT19680 synaptic vesicle glycoprotein 2B protein-coding 336-451 chr5 61604377 61604557 + 2 NA Intergenic MER5A|DNA|hAT-Charlie -33293 NR_161251 285668 Hs.683866 NR_126523 ENSG00000178722 C5orf64 - chromosome 5 open reading frame 64 ncRNA 205-62 chr12 5235027 5235154 + 2 NA intron (NR_120476, intron 4 of 4) intron (NR_120476, intron 4 of 4) 8061 NR_120477 101929584 Hs.436529 NR_120476 ENSG00000256115 LINC02443 - long intergenic non-protein coding RNA 2443 ncRNA 398-295 chr6 64610045 64610399 + 2 NA intron (NM_001292009, intron 24 of 43) intron (NM_001292009, intron 24 of 43) -691196 NM_001271675 441155 Hs.546686 NM_001271675 LOC441155 - zinc finger CCCH-type domain-containing-like protein-coding 231-113 chr16 18006165 18006362 + 2 NA Intergenic FLAM_C|SINE|Alu 326399 NM_001282507 101059938 Hs.634612 NM_001282507 ENSG00000214967 NPIPA7 NPIPA8 nuclear pore complex interacting protein family member A7 protein-coding 293-354 chr5 149102008 149102190 + 2 NA intron (NR_122044, intron 2 of 2) L1M2|LINE|L1 38782 NR_122044 255187 Hs.149321 NR_122044 ENSG00000250072 SH3TC2-DT - SH3TC2 divergent transcript ncRNA 168-101 chr7 26227742 26227843 + 2 NA Intergenic MLT2A1|LTR|ERVL 26047 NM_016587 11335 Hs.381189 NM_007276 ENSG00000122565 CBX3 HECH|HP1-GAMMA|HP1Hs-gamma chromobox 3 protein-coding 205-130 chr19 51812411 51812522 + 2 NA intron (NR_163433, intron 10 of 11) HERVL74-int|LTR|ERVL 17309 NM_002030 2359 Hs.445466 NM_002030 ENSG00000187474 FPR3 FML2_HUMAN|FMLP-R-II|FMLPY|FPRH1|FPRH2|FPRL2|RMLP-R-I formyl peptide receptor 3 protein-coding 693-14 chr10 57589558 57590133 + 2 NA Intergenic L1PBa1|LINE|L1 -285286 NR_037490 100500834 NR_037490 ENSG00000264747 MIR3924 - microRNA 3924 ncRNA 418-266 chr7 69624089 69624468 + 2 NA intron (NM_015570, intron 1 of 18) intron (NM_015570, intron 1 of 18) 25803 NM_001127232 26053 Hs.21631 NM_015570 ENSG00000158321 AUTS2 FBRSL2|MRD26 activator of transcription and developmental regulator AUTS2 protein-coding 349-93 chr11 15536205 15536459 + 2 NA Intergenic Intergenic -107553 NM_001293172 102724957 Hs.512245 NM_001293172 LOC102724957 - uncharacterized LOC102724957 protein-coding 275-168 chr18 69596624 69596804 + 2 NA intron (NM_152721, intron 2 of 7) L1M4b|LINE|L1 126783 NR_134579 105372179 Hs.666269 NR_134579 ENSG00000264845 LOC105372179 - uncharacterized LOC105372179 ncRNA 346-159 chr15 63415842 63416106 + 2 NA intron (NR_120375, intron 4 of 6) AluJr|SINE|Alu 25744 NR_120375 102723344 Hs.569500 NR_120375 LINC02568 - long intergenic non-protein coding RNA 2568 ncRNA 612-34 chr13 58707937 58708354 + 2 NA Intergenic Intergenic -475028 NR_132367 106144531 Hs.736640 NR_132367 ENSG00000232954 LINC00374 - long intergenic non-protein coding RNA 374 ncRNA 373-200 chr2 101078078 101078412 + 2 NA intron (NM_001102426, intron 2 of 19) LTR8A|LTR|ERV1 73202 NR_138475 11138 Hs.442657 NM_007063 ENSG00000204634 TBC1D8 AD3|GRAMD8|HBLP1|TBC1D8A|VRP TBC1 domain family member 8 protein-coding 451-246 chr8 134449227 134449632 + 2 NA Intergenic MER41A|LTR|ERV1 -148642 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 323-216 chr19 36785096 36785285 + 2 NA Intergenic AluJo|SINE|Alu 12072 NM_001294306 728485 Hs.157101 NM_001294306 LOC728485 - uncharacterized LOC728485 protein-coding 311-527 chr8 128477360 128477529 + 2 NA intron (NR_121672, intron 2 of 7) intron (NR_121672, intron 2 of 7) 87235 NR_121673 101927774 Hs.628730 NR_121672 LINC00824 LINC01263 long intergenic non-protein coding RNA 824 ncRNA 345-561 chr9 111188940 111189137 + 2 NA Intergenic Intergenic 82176 NR_106989 102465800 NR_106989 ENSG00000274263 MIR7702 hsa-mir-7702 microRNA 7702 ncRNA 463-298 chr8 137217862 137218292 + 2 NA Intergenic PABL_B|LTR|ERV1 195511 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 249-109 chr14 26071507 26071650 + 2 NA Intergenic MLT1J1|LTR|ERVL-MaLR 481852 NM_001366398 4857 Hs.31588 NM_002515 ENSG00000139910 NOVA1 Nova-1 NOVA alternative splicing regulator 1 protein-coding 321-426 chr4 76225163 76225412 + 2 NA intron (NM_001242936, intron 2 of 7) L1PB1|LINE|L1 11247 NM_001242936 100129583 Hs.720509 NM_001136570 ENSG00000189157 FAM47E - family with sequence similarity 47 member E protein-coding 448-223 chr5 127986298 127986663 + 2 NA intron (NR_152803, intron 1 of 1) intron (NR_152803, intron 1 of 1) 96695 NR_152815 644873 Hs.340623 NR_015360 ENSG00000245937 LINC01184 - long intergenic non-protein coding RNA 1184 ncRNA 203-221 chr7 64265356 64265532 + 2 NA intron (NM_153363, intron 4 of 4) intron (NM_153363, intron 4 of 4) 36970 NM_153363 168417 Hs.520884 NM_153363 ENSG00000197123 ZNF679 - zinc finger protein 679 protein-coding 702-57 chr21 16987391 16987797 + 2 NA Intergenic L1M1|LINE|L1 397357 NR_029694 406912 NR_029694 ENSG00000207863 MIR125B2 MIRN125B2|mir-125b-2 microRNA 125b-2 ncRNA 437-266 chr8 43805837 43806118 + 2 NA Intergenic ALR/Alpha|Satellite|centr 513535 NM_001002920 340441 Hs.531579 NM_001002920 ENSG00000188877 POTEA A26A1|CT104.3|POTE-8|POTE8 POTE ankyrin domain family member A protein-coding 420-243 chr5 123242393 123242774 + 2 NA Intergenic L1PA2|LINE|L1 -152267 NR_146771 105379152 Hs.537420 NR_146771 LOC105379152 - uncharacterized LOC105379152 ncRNA 380-3 chr1 36878533 36878857 + 2 NA intron (NM_000831, intron 3 of 15) MIRb|SINE|MIR 155820 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 440-62 chr13 105703375 105703807 + 2 NA Intergenic Intergenic -3239 NR_120418 144920 Hs.567700 NR_046391 LINC00343 LINC00344|NCRNA00343|NCRNA00344 long intergenic non-protein coding RNA 343 ncRNA 176-156 chr9 116788418 116788585 + 2 NA intron (NM_014010, intron 12 of 21) MIRc|SINE|MIR 101196 NM_001099679 22954 Hs.591910 NM_012210 ENSG00000119401 TRIM32 BBS11|HT2A|LGMD2H|LGMDR8|TATIP tripartite motif containing 32 protein-coding 399-92 chr14 68723235 68723540 + 2 NA Intergenic Intergenic 70527 NM_004926 677 Hs.85155 NM_004926 ENSG00000185650 ZFP36L1 BRF1|Berg36|ERF-1|ERF1|RNF162B|TIS11B|cMG1 ZFP36 ring finger protein like 1 protein-coding 448-256 chr7 42310334 42310743 + 2 NA Intergenic MLT1A1|LTR|ERVL-MaLR -73329 NM_000168 2737 Hs.21509 NM_000168 ENSG00000106571 GLI3 ACLS|GCPS|GLI3-190|GLI3FL|PAP-A|PAPA|PAPA1|PAPB|PHS|PPDIV GLI family zinc finger 3 protein-coding 360-373 chr5 106369069 106369264 + 2 NA Intergenic L1MA2|LINE|L1 641848 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 329-501 chr6 79193899 79194178 + 2 NA Intergenic Intergenic -39636 NR_040671 100288198 Hs.586270 NR_040671 ENSG00000270362 HMGN3-AS1 - HMGN3 antisense RNA 1 ncRNA 381-150 chr18 25156301 25156568 + 2 NA intron (NM_001308225, intron 4 of 6) intron (NM_001308225, intron 4 of 6) -168455 NR_146903 105372030 NR_146903 LINC01894 - long intergenic non-protein coding RNA 1894 ncRNA 368-467 chr8 125708869 125709188 + 2 NA Intergenic Tigger2|DNA|TcMar-Tigger 242169 NR_038447 100130231 Hs.729642 NR_038446 ENSG00000245164 LINC00861 - long intergenic non-protein coding RNA 861 ncRNA 336-64 chr10 36642367 36642558 + 2 NA Intergenic (ATAGTAT)n|Simple_repeat|Simple_repeat -483395 NM_052997 91074 Hs.373787 NM_052997 ENSG00000148513 ANKRD30A NY-BR-1 ankyrin repeat domain 30A protein-coding 308-246 chr2 132693303 132693559 + 2 NA intron (NM_207481, intron 17 of 17) MLT1C|LTR|ERVL-MaLR -21905 NM_001077427 116372 Hs.432395 NM_144586 ENSG00000150551 LYPD1 LYPDC1|PHTS LY6/PLAUR domain containing 1 protein-coding 442-242 chr6 13968134 13968427 + 2 NA intron (NM_001165032, intron 2 of 3) intron (NM_001165032, intron 2 of 3) 43087 NM_001165033 221687 Hs.111164 NM_152737 ENSG00000180537 RNF182 - ring finger protein 182 protein-coding 408-314 chr7 49017442 49017841 + 2 NA Intergenic L1MEf|LINE|L1 93094 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 245-105 chr12 105872308 105872450 + 2 NA Intergenic L1MA3|LINE|L1 165605 NR_110110 101929110 Hs.145944 NR_110108 ENSG00000257859 CASC18 - cancer susceptibility 18 ncRNA 353-438 chr6 40061925 40062154 + 2 NA Intergenic LTR39-int|LTR|ERV1 -127577 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 191-133 chr3 26546959 26547123 + 2 NA Intergenic MER58B|DNA|hAT-Charlie -75765 NM_052953 116135 Hs.517868 NM_052953 ENSG00000179796 LRRC3B LRP15 leucine rich repeat containing 3B protein-coding 390-328 chr6 84279060 84279300 + 2 NA Intergenic Intergenic -51537 NM_014895 22832 Hs.485865 NM_014895 ENSG00000135315 CEP162 C6orf84|KIAA1009|QN1 centrosomal protein 162 protein-coding 189-124 chr3 50775804 50775946 + 2 NA intron (NM_004947, intron 1 of 52) L1PB2|LINE|L1 100795 NR_039950 100616138 NR_039950 ENSG00000272543 MIR4787 mir-4787 microRNA 4787 ncRNA 310-327 chr3 67946269 67946561 + 2 NA intron (NR_109992, intron 6 of 6) LTR106_Mam|LTR|LTR -45177 NM_001252216 407738 Hs.655061 NM_213609 ENSG00000183662 TAFA1 FAM19A1|TAFA-1 TAFA chemokine like family member 1 protein-coding 404-256 chr5 39362678 39363037 + 2 NA intron (NM_001737, intron 1 of 10) intron (NM_001737, intron 1 of 10) 1638 NM_001737 735 Hs.654443 NM_001737 ENSG00000113600 C9 ARMD15|C9D complement C9 protein-coding 265-209 chr20 1755090 1755302 + 2 NA Intergenic L1MA5|LINE|L1 24550 NR_037142 100289473 Hs.641525 NR_037142 ENSG00000232528 LOC100289473 - cytoskeleton associated protein 2-like pseudogene pseudo 306-22 chr1 102784412 102784580 + 2 NA Intergenic THE1C-int|LTR|ERVL-MaLR 324000 NM_080629 1301 Hs.523446 NM_001854 ENSG00000060718 COL11A1 CO11A1|COLL6|STL2 collagen type XI alpha 1 chain protein-coding 759-35 chr2 35046269 35046911 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 369033 NR_126404 104355288 Hs.624529 NR_126404 ENSG00000228262 LINC01320 - long intergenic non-protein coding RNA 1320 ncRNA 252-441 chr8 135893050 135893255 + 2 NA Intergenic L1MEc|LINE|L1 435696 NM_006558 10656 Hs.444558 NM_006558 ENSG00000131773 KHDRBS3 Etle|SALP|SLM-2|SLM2|T-STAR|TSTAR|etoile KH RNA binding domain containing, signal transduction associated 3 protein-coding 305-192 chr17 26847435 26847732 + 2 NA Intergenic (TGGAA)n|Simple_repeat|Simple_repeat 241658 NR_135673 105371703 Hs.649918 NR_135673 LOC105371703 - uncharacterized LOC105371703 ncRNA 507-175 chr3 191039222 191039601 + 2 NA Intergenic L1MA1|LINE|L1 -159830 NM_198184 344901 Hs.526794 NM_198184 ENSG00000188729 OSTN MUSCLIN osteocrin protein-coding 491-26 chr11 2222933 2223289 + 2 NA Intergenic L1MEc|LINE|L1 47841 NM_005170 430 Hs.152475 NM_005170 ENSG00000183734 ASCL2 ASH2|HASH2|MASH2|bHLHa45 achaete-scute family bHLH transcription factor 2 protein-coding 394-3 chr1 55782272 55782612 + 2 NA Intergenic ERVL-int|LTR|ERVL 162521 NR_147162 105378739 Hs.98895 NR_147162 ENSG00000230250 LINC01753 - long intergenic non-protein coding RNA 1753 ncRNA 246-155 chr17 60984244 60984465 + 2 NA intron (NM_001330413, intron 14 of 25) intron (NM_001330413, intron 14 of 25) 306503 NM_001330413 54828 Hs.655028 NM_017679 ENSG00000141376 BCAS3 GAOB1|MAAB BCAS3 microtubule associated cell migration factor protein-coding 278-354 chr5 143173398 143173613 + 2 NA intron (NM_001349547, intron 20 of 21) intron (NM_001349547, intron 20 of 21) -18995 NR_046816 100874372 Hs.666717 NR_046816 ENSG00000230789 ARHGAP26-IT1 - ARHGAP26 intronic transcript 1 ncRNA 411-5 chr1 59556809 59557201 + 2 NA intron (NM_001350794, intron 8 of 14) intron (NM_001350794, intron 8 of 14) 41375 NM_001278224 55277 Hs.444301 NM_018291 ENSG00000172456 FGGY - FGGY carbohydrate kinase domain containing protein-coding 420-83 chr14 75616992 75617299 + 2 NA intron (NM_001195283, intron 1 of 9) intron (NM_001195283, intron 1 of 9) 11605 NM_001195283 55640 Hs.509966 NM_017791 ENSG00000119686 FLVCR2 C14orf58|CCT|EPV|FLVCRL14q|MFSD7C|PVHH|SLC49A2 feline leukemia virus subgroup C cellular receptor family member 2 protein-coding 386-149 chr19 37813249 37813551 + 2 NA Intergenic LTR53B|LTR|ERVL -4011 NR_040013 644554 Hs.683930 NR_040013 LOC644554 - uncharacterized LOC644554 ncRNA 210-297 chr8 126214851 126215007 + 2 NA Intergenic Intergenic -110566 NR_125421 101927657 Hs.552133 NR_125421 ENSG00000244791 LOC101927657 - uncharacterized LOC101927657 ncRNA 395-293 chr6 118867558 118867795 + 2 NA intron (NM_017696, intron 6 of 11) Tigger3c|DNA|TcMar-Tigger -26476 NM_014034 25842 Hs.292316 NM_014034 ENSG00000111875 ASF1A CGI-98|CIA|HSPC146 anti-silencing function 1A histone chaperone protein-coding 273-28 chr1 191006123 191006284 + 2 NA Intergenic L1MA1|LINE|L1 222295 NR_146892 105371660 Hs.127094 NR_146892 ENSG00000233882 LINC01680 - long intergenic non-protein coding RNA 1680 ncRNA 236-29 chr1 220931607 220931778 + 2 NA Intergenic L1PB4|LINE|L1 -51552 NR_046901 100873924 Hs.645593 NR_046901 ENSG00000257551 HLX-AS1 - HLX antisense RNA 1 ncRNA 333-90 chr11 70895694 70895870 + 2 NA intron (NM_012309, intron 10 of 24) intron (NM_012309, intron 10 of 24) -23414 NR_037437 100500844 NR_037437 ENSG00000263744 MIR3664 mir-3664 microRNA 3664 ncRNA 348-23 chr1 157714475 157714654 + 2 NA Intergenic L1MA2|LINE|L1 -13795 NR_135216 115352 Hs.292449 NM_052939 ENSG00000160856 FCRL3 CD307c|FCRH3|IFGP3|IRTA3|SPAP2 Fc receptor like 3 protein-coding 155-90 chr6 76332075 76332191 + 2 NA Intergenic (AT)n|Simple_repeat|Simple_repeat -259455 NM_001282368 3617 Hs.590893 NM_001563 ENSG00000112706 IMPG1 GP147|IPM150|SPACR|VMD4 interphotoreceptor matrix proteoglycan 1 protein-coding 335-63 chr10 67244999 67245262 + 2 NA intron (NM_001127384, intron 5 of 17) L2a|LINE|L2 158280 NR_106973 102466814 NR_106973 ENSG00000276866 MIR7151 hsa-mir-7151 microRNA 7151 ncRNA 358-444 chr7 64539517 64539843 + 2 NA intron (NM_001130022, intron 3 of 3) AluJb|SINE|Alu 23391 NM_178558 340252 Hs.520886 NM_178558 ENSG00000173041 ZNF680 - zinc finger protein 680 protein-coding 531-201 chr5 91819238 91819661 + 2 NA Intergenic Intergenic -436132 NM_001329672 57561 Hs.24684 NM_020801 ENSG00000113369 ARRDC3 TLIMP arrestin domain containing 3 protein-coding 231-83 chr13 55043185 55043363 + 2 NA Intergenic MER113|DNA|hAT-Charlie -131180 NR_049804 100846996 NR_049804 ENSG00000264387 MIR5007 - microRNA 5007 ncRNA 526-104 chr18 34677213 34677600 + 2 NA intron (NM_001198939, intron 1 of 21) intron (NM_001198939, intron 1 of 21) -32892 NM_032978 1837 Hs.643454 NM_001390 ENSG00000134769 DTNA D18S892E|DRP3|DTN|DTN-A|LVNC1 dystrobrevin alpha protein-coding 316-513 chr7 37625770 37626024 + 2 NA Intergenic Intergenic -57869 NM_001329994 353345 Hs.563492 NM_181791 ENSG00000187037 GPR141 PGR13 G protein-coupled receptor 141 protein-coding 516-252 chr8 114991347 114991767 + 2 NA Intergenic Intergenic 676456 NM_001282902 7227 Hs.657018 NM_014112 ENSG00000104447 TRPS1 GC79|LGCR transcriptional repressor GATA binding 1 protein-coding 579-161 chr8 32892569 32893018 + 2 NA Intergenic MER58A|DNA|hAT-Charlie 170958 NM_001322197 3084 Hs.453951 NM_004495 ENSG00000157168 NRG1 ARIA|GGF|GGF2|HGL|HRG|HRG1|HRGA|MST131|MSTP131|NDF|NRG1-IT2|SMDF neuregulin 1 protein-coding 250-427 chr8 85389843 85390040 + 2 NA Intergenic Intergenic -11828 NM_001738 759 Hs.23118 NM_001738 ENSG00000133742 CA1 CA-I|CAB|Car1|HEL-S-11 carbonic anhydrase 1 protein-coding 312-32 chr10 18837719 18837975 + 2 NA Intergenic MLT1J|LTR|ERVL-MaLR 178416 NM_178815 221079 Hs.25362 NM_178815 ENSG00000165997 ARL5B ARL8 ADP ribosylation factor like GTPase 5B protein-coding 238-379 chr8 65027531 65027699 + 2 NA Intergenic Intergenic 152725 NR_038901 552859 Hs.156997 NR_038901 ENSG00000280725 LINC00251 C8orf25|NCRNA00251 long intergenic non-protein coding RNA 251 ncRNA 687-31 chr12 60692727 60693327 + 2 NA Intergenic Intergenic 1003657 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 474-96 chr15 90887043 90887417 + 2 NA exon (NM_001143785, exon 4 of 17) exon (NM_001143785, exon 4 of 17) 2184 NM_001143784 2242 Hs.7636 NM_002005 ENSG00000182511 FES FPS FES proto-oncogene, tyrosine kinase protein-coding 245-56 chr10 79951369 79951544 + 2 NA Intergenic L1PA15-16|LINE|L1 -2351 NM_003019 6441 Hs.253495 NM_003019 ENSG00000133661 SFTPD COLEC7|PSP-D|SFTP4|SP-D surfactant protein D protein-coding 243-467 chr8 141958917 141959109 + 2 NA Intergenic L1ME3A|LINE|L1 -172700 NR_031636 100302147 NR_031636 ENSG00000221768 MIR1302-7 MIRN1302-7|hsa-mir-1302-7 microRNA 1302-7 ncRNA 347-548 chr9 76740763 76741068 + 2 NA intron (NM_001308048, intron 6 of 17) intron (NM_001308048, intron 6 of 17) -23521 NR_132312 50652 Hs.663766 NR_015342 ENSG00000225937 PCA3 DD3|NCRNA00019|PCAT3|PRUNE2-AS1 prostate cancer associated 3 ncRNA 208-13 chr1 174717802 174717931 + 2 NA intron (NM_001366451, intron 2 of 12) intron (NM_001366451, intron 2 of 12) 16871 NM_001366452 9910 Hs.585378 NM_014857 ENSG00000152061 RABGAP1L HHL|TBC1D18 RAB GTPase activating protein 1 like protein-coding 306-153 chr14 82380963 82381184 + 2 NA Intergenic L1MB8|LINE|L1 -261559 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 386-298 chr5 119694020 119694294 + 2 NA Intergenic Intergenic 64598 NM_001163991 340069 Hs.713304 NM_182761 ENSG00000164334 FAM170A ZNFD family with sequence similarity 170 member A protein-coding 411-171 chr22 49718147 49718390 + 2 NA Intergenic Intergenic -60749 NM_001289922 348645 Hs.133159 NM_198851 ENSG00000188511 C22orf34 - chromosome 22 open reading frame 34 protein-coding 506-165 chr20 6314538 6314972 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger -111977 NR_109953 101929244 Hs.542488 NR_109953 ENSG00000229876 CASC20 - cancer susceptibility 20 ncRNA 271-478 chr9 79677178 79677417 + 2 NA intron (NR_104239, intron 9 of 20) intron (NR_104239, intron 9 of 20) 104120 NM_001351560 7091 Hs.444213 NM_007005 ENSG00000106829 TLE4 BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 TLE family member 4, transcriptional corepressor protein-coding 378-177 chr17 71101745 71102108 + 2 NA intron (NR_104152, intron 3 of 3) Tigger3a|DNA|TcMar-Tigger 100253 NR_104152 101928165 Hs.407613 NR_104152 ENSG00000260785 CASC17 LINC00600 cancer susceptibility 17 ncRNA 488-97 chr16 48659673 48659990 + 2 NA Intergenic AluJr|SINE|Alu -49651 NM_153029 9683 Hs.511839 NM_153029 ENSG00000102921 N4BP1 - NEDD4 binding protein 1 protein-coding 478-4 chr1 56213712 56214066 + 2 NA Intergenic L2a|LINE|L2 -201074 NR_147163 105378744 Hs.183974 NR_147163 ENSG00000223956 LINC01767 - long intergenic non-protein coding RNA 1767 ncRNA 298-296 chr3 74207127 74207376 + 2 NA Intergenic MIR|SINE|MIR 313889 NM_020872 5067 Hs.12723 NM_020872 ENSG00000113805 CNTN3 BIG-1|PANG|PCS contactin 3 protein-coding 347-554 chr9 89738321 89738555 + 2 NA Intergenic Intergenic 98655 NR_024280 100129066 Hs.125947 NR_024280 ENSG00000237372 UNQ6494 - uncharacterized LOC100129066 ncRNA 335-474 chr6 132201921 132202141 + 2 NA Intergenic Intergenic 68053 NR_146223 100507254 Hs.103070 NR_038981 ENSG00000228495 LINC01013 - long intergenic non-protein coding RNA 1013 ncRNA 337-86 chr11 43876373 43876642 + 2 NA Intergenic ERVL-E-int|LTR|ERVL -4324 NM_139178 221120 Hs.720708 NM_139178 ENSG00000166199 ALKBH3 ABH3|DEPC-1|DEPC1|PCA1|hABH3 alkB homolog 3, alpha-ketoglutaratedependent dioxygenase protein-coding 463-233 chr5 55285190 55285504 + 2 NA exon (NM_001345964, exon 10 of 27) exon (NM_001345964, exon 10 of 27) 22347 NR_144324 54505 Hs.593268 NM_019030 ENSG00000067248 DHX29 DDX29 DExH-box helicase 29 protein-coding 380-424 chrX 4612889 4613145 + 2 NA Intergenic Intergenic 20555 NR_110390 101928201 Hs.586488 NR_110390 ENSG00000236513 LOC101928201 - uncharacterized LOC101928201 ncRNA 304-549 chr9 96193606 96193831 + 2 NA Intergenic Intergenic -52745 NR_146524 105376162 Hs.662614 NR_146524 ENSG00000232283 HSD17B3-AS1 - HSD17B3 antisense RNA 1 ncRNA 269-66 chr11 78787363 78787582 + 2 NA intron (NM_001098816, intron 15 of 33) intron (NM_001098816, intron 15 of 33) -212608 NM_001243251 79731 Hs.503389 NM_024678 ENSG00000137513 NARS2 DFNB94|SLM5|asnRS asparaginyl-tRNA synthetase 2, mitochondrial protein-coding 325-442 chr5 53389547 53389724 + 2 NA Intergenic L1MEf|LINE|L1 -90994 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 375-254 chr22 35187256 35187503 + 2 NA intron (NR_126356, intron 2 of 5) L1PREC2|LINE|L1 43677 NR_126356 104310353 Hs.581009 NR_126356 ENSG00000233080 LINC01399 - long intergenic non-protein coding RNA 1399 ncRNA 543-168 chr3 76322252 76322769 + 2 NA Intergenic Intergenic -536961 NM_001290208 100131827 Hs.556877 NM_001128223 ENSG00000227124 ZNF717 OB1|X17|ZNF838 zinc finger protein 717 protein-coding 264-378 chr7 11909275 11909480 + 2 NA Intergenic Intergenic -77179 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 324-540 chr8 108826909 108827102 + 2 NA Intergenic L2c|LINE|L2 -39411 NR_136411 157753 Hs.99439 NM_153015 ENSG00000164841 TMEM74 NET36 transmembrane protein 74 protein-coding 251-371 chr7 54148377 54148595 + 2 NA Intergenic MER21C|LTR|ERVL -182211 NR_120515 102723605 Hs.154626 NR_120515 ENSG00000231427 LINC01445 - long intergenic non-protein coding RNA 1445 ncRNA 589-107 chr4 65383004 65383506 + 2 NA intron (NM_001281767, intron 8 of 16) intron (NM_001281767, intron 8 of 16) 286233 NM_001318761 2044 Hs.654492 NM_004439 ENSG00000145242 EPHA5 CEK7|EHK-1|EHK1|EK7|HEK7|TYRO4 EPH receptor A5 protein-coding 356-430 chr6 115624273 115624577 + 2 NA Intergenic L1ME3B|LINE|L1 19410 NR_134602 105377962 Hs.571066 NR_134602 LINC02534 - long intergenic non-protein coding RNA 2534 ncRNA 282-376 chr5 53353128 53353354 + 2 NA Intergenic MLT1A0|LTR|ERVL-MaLR -127388 NM_013409 10468 Hs.9914 NM_006350 ENSG00000134363 FST FS follistatin protein-coding 360-299 chr3 66066871 66067178 + 2 NA Intergenic Intergenic -28106 NM_001365905 9223 Hs.476636 NM_004742 ENSG00000151276 MAGI1 AIP-3|AIP3|BAIAP1|BAP-1|BAP1|MAGI-1|MAGI-1b|Magi1d|TNRC19|WWP3 membrane associated guanylate kinase, WW and PDZ domain containing 1 protein-coding 381-352 chr7 28661057 28661365 + 2 NA intron (NM_182899, intron 4 of 9) intron (NM_182899, intron 4 of 9) -24922 NM_001011666 9586 Hs.437075 NM_004904 ENSG00000146592 CREB5 CRE-BPA|CREB-5|CREBPA cAMP responsive element binding protein 5 protein-coding 350-136 chr14 62274554 62274771 + 2 NA Intergenic L1M5|LINE|L1 -134689 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 304-299 chr20 33033689 33033872 + 2 NA intron (NM_174897, intron 2 of 14) MER20|DNA|hAT-Charlie 2132 NM_174897 128859 Hs.375090 NM_174897 ENSG00000167104 BPIFB6 BPIL3|LPLUNC6 BPI fold containing family B member 6 protein-coding 478-293 chr8 103974191 103974449 + 2 NA intron (NR_145711, intron 12 of 21) intron (NR_145711, intron 12 of 21) 155100 NM_001348508 9699 Hs.655271 NM_014677 ENSG00000176406 RIMS2 OBOE|RAB3IP3|RIM2 regulating synaptic membrane exocytosis 2 protein-coding 259-72 chr11 39675381 39675586 + 2 NA Intergenic Intergenic 617647 NR_047673 57689 Hs.745123 NM_020929 ENSG00000148948 LRRC4C NGL-1|NGL1 leucine rich repeat containing 4C protein-coding 617-129 chr8 69388083 69388564 + 2 NA Intergenic HAL1|LINE|L1 59921 NR_110433 100505739 Hs.127115 NR_110433 LINC01603 - long intergenic non-protein coding RNA 1603 ncRNA 248-346 chr6 50216908 50217127 + 2 NA Intergenic Intergenic -167088 NM_001369057 245915 Hs.571092 NM_001037498 ENSG00000180872 DEFB112 DEFB-12 defensin beta 112 protein-coding 530-119 chr2 39444208 39444696 + 2 NA intron (NR_037875, intron 1 of 5) intron (NR_037875, intron 1 of 5) 7036 NR_037875 728730 Hs.655344 NR_037875 ENSG00000231312 MAP4K3-DT - MAP4K3 divergent transcript ncRNA 578-19 chr1 238516824 238517386 + 2 NA Intergenic Intergenic -31088 NR_015407 339535 Hs.532047 NR_015407 ENSG00000215808 LINC01139 LINK-A|LINKA long intergenic non-protein coding RNA 1139 ncRNA 301-52 chr10 108422300 108422528 + 2 NA Intergenic Intergenic -353121 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 557-109 chr2 126723629 126724002 + 2 NA Intergenic Intergenic 67657 NM_002101 2995 Hs.59138 NM_002101 ENSG00000136732 GYPC CD236|CD236R|GE|GE:GPC:GPD:GYPD|GPC|GPD|GYPD|PAS-2|PAS-2' glycophorin C (Gerbich blood group) protein-coding 494-21 chr10 34094864 34095315 + 2 NA Intergenic L1M4c|LINE|L1 -322409 NR_038932 100505583 Hs.568804 NR_038932 ENSG00000261683 LINC00838 - long intergenic non-protein coding RNA 838 ncRNA 193 chr1 23761615 23761801 + 2 NA 3' UTR (NM_003198, exon 11 of 11) 3' UTR (NM_003198, exon 11 of 11) 16589 NR_038280 100506963 Hs.592549 NR_038280 ENSG00000236810 ELOA-AS1 TCEB3-AS1 ELOA antisense RNA 1 ncRNA 258-91 chr12 54676280 54676505 + 2 NA Intergenic Intergenic -28027 NM_053283 117159 Hs.350570 NM_053283 ENSG00000161634 DCD AIDD|DCD-1|DSEP|HCAP|PIF dermcidin protein-coding 384-134 chr16 27144766 27145037 + 2 NA Intergenic Intergenic -58625 NM_024773 79831 Hs.145717 NM_024773 ENSG00000155666 KDM8 JMJD5 lysine demethylase 8 protein-coding 213-236 chr5 102311250 102311409 + 2 NA Intergenic L2a|LINE|L2 -15045 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 385-197 chr2 194981075 194981305 + 2 NA Intergenic AluSx|SINE|Alu 250595 NR_110223 101927431 Hs.558215 NR_110223 ENSG00000230173 LINC01790 - long intergenic non-protein coding RNA 1790 ncRNA 721-52 chr22 30174696 30175207 + 2 NA intron (NM_001329457, intron 11 of 11) intron (NM_001329457, intron 11 of 11) -64243 NR_149070 110806283 NR_149070 ENSG00000232530 LIF-AS1 Lnc-LIF-AS LIF antisense RNA 1 ncRNA 251-243 chr3 115843944 115844086 + 2 NA intron (NM_001318915, intron 4 of 8) MIR3|SINE|MIR 61111 NR_145779 109623450 NR_145779 SNORD155 - small nucleolar RNA, C/D box 155 snoRNA 209-346 chr9 79252181 79252369 + 2 NA Intergenic Intergenic -106609 NR_109771 101927450 Hs.738041 NR_109771 ENSG00000260995 LOC101927450 - uncharacterized LOC101927450 ncRNA 371-365 chr7 61929008 61929273 + 2 NA Intergenic ALR/Alpha|Satellite|centr 1374916 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 447-10 chr1 172404146 172404493 + 2 NA intron (NM_001350206, intron 20 of 20) intron (NM_001350206, intron 20 of 20) -16366 NM_139240 92346 Hs.517991 NM_139240 ENSG00000180999 C1orf105 - chromosome 1 open reading frame 105 protein-coding 723-29 chr19 27459485 27459984 + 2 NA Intergenic ALR/Alpha|Satellite|centr -333697 NR_146734 101927151 Hs.567934 NR_110687 ENSG00000267575 LOC101927151 - uncharacterized LOC101927151 ncRNA 299-35 chr1 239155526 239155785 + 2 NA Intergenic LTR16B|LTR|ERVL -230913 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 371-38 chr10 23997669 23997898 + 2 NA intron (NM_001098500, intron 1 of 18) intron (NM_001098500, intron 1 of 18) -211008 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 218-236 chr4 44147270 44147401 + 2 NA Intergenic Intergenic 130273 NR_131958 100506827 Hs.156197 NR_131958 ENSG00000251350 LINC02475 LVCAT1 long intergenic non-protein coding RNA 2475 ncRNA 357-38 chr10 64709847 64710152 + 2 NA Intergenic Intergenic -115529 NR_001446 305 Hs.591361 NR_001446 ANXA2P3 ANX2L3|ANX2P3|LIP2|LPC2C annexin A2 pseudogene 3 pseudo 140-58 chr5 30298245 30298345 + 2 NA Intergenic Intergenic 417735 NR_134264 105374704 Hs.151157 NR_134264 LOC105374704 - uncharacterized LOC105374704 ncRNA 179-52 chr2 193540275 193540408 + 2 NA Intergenic MLT1J2|LTR|ERVL-MaLR 790496 NR_002769 64002 Hs.546994 NR_002769 ENSG00000227418 PCGEM1 LINC00071|NCRNA00071|PCAT9 PCGEM1 prostate-specific transcript ncRNA 337-301 chr20 124853 125120 + 2 NA Intergenic L1MDa|LINE|L1 -17604 NM_030931 81623 Hs.124211 NM_030931 ENSG00000125788 DEFB126 C20orf8|DEFB-26|DEFB26|HBD26|bA530N10.1|hBD-26 defensin beta 126 protein-coding 266-352 chr5 165020864 165021115 + 2 NA Intergenic L1PB1|LINE|L1 550710 NR_105065 102546299 Hs.437730 NR_105065 ENSG00000241956 LOC102546299 - uncharacterized LOC102546299 ncRNA 663-108 chr7 62402116 62402584 + 2 NA Intergenic Intergenic 901706 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 739-4 chr1 172791396 172791801 + 2 NA Intergenic L1MB7|LINE|L1 132495 NM_000639 356 Hs.2007 NM_000639 ENSG00000117560 FASLG ALPS1B|APT1LG1|APTL|CD178|CD95-L|CD95L|FASL|TNFSF6|TNLG1A Fas ligand protein-coding 600-129 chr8 116544509 116544868 + 2 NA Intergenic AluJr|SINE|Alu -107412 NR_136278 105375713 NR_136278 LOC105375713 - uncharacterized LOC105375713 ncRNA 481-153 chr2 136226928 136227353 + 2 NA Intergenic Intergenic -108985 NM_003467 7852 Hs.593413 NM_003467 ENSG00000121966 CXCR4 CD184|D2S201E|FB22|HM89|HSY3RR|LAP-3|LAP3|LCR1|LESTR|NPY3R|NPYR|NPYRL|NPYY3R|WHIM|WHIMS C-X-C motif chemokine receptor 4 protein-coding 443-236 chr5 12821207 12821591 + 2 NA Intergenic L1PB4|LINE|L1 153540 NR_039659 100616234 NR_039659 ENSG00000283468 MIR4454 - microRNA 4454 ncRNA 412-316 chr7 106402870 106403184 + 2 NA Intergenic Intergenic -118044 NM_005746 10135 Hs.489615 NM_005746 ENSG00000105835 NAMPT 1110035O14Rik|PBEF|PBEF1|VF|VISFATIN nicotinamide phosphoribosyltransferase protein-coding 349-53 chr10 36339528 36339845 + 2 NA Intergenic Tigger3a|DNA|TcMar-Tigger 561384 NR_110138 102578074 NR_110138 ENSG00000280719 PCAT5 LINC01452|TPCAT-10-36067 prostate cancer associated transcript 5 ncRNA 319-483 chr6 163361224 163361486 + 2 NA Intergenic L1MC3|LINE|L1 -14322 NR_033862 401282 Hs.444817 NR_033862 ENSG00000285564 DKFZp451B082 - uncharacterized LOC401282 ncRNA 360-163 chr16 78633935 78634164 + 2 NA intron (NM_001291997, intron 7 of 7) intron (NM_001291997, intron 7 of 7) 534395 NR_120435 51741 Hs.461453 NM_016373 ENSG00000186153 WWOX D16S432E|EIEE28|FOR|FRA16D|HHCMA56|PRO0128|SCAR12|SDR41C1|WOX1 WW domain containing oxidoreductase protein-coding 251-174 chr2 82831235 82831413 + 2 NA Intergenic Intergenic -25479 NR_033423 1720 Hs.169235 NR_033423 DHFRP3 - dihydrofolate reductase pseudogene 3 pseudo 242-351 chr6 138620393 138620628 + 2 NA Intergenic Intergenic -47941 NM_020464 57224 Hs.652741 NM_020464 ENSG00000135540 NHSL1 C6orf63 NHS like 1 protein-coding 350-358 chr4 98194238 98194535 + 2 NA Intergenic MER4B-int|LTR|ERV1 -50910 NM_174952 285555 Hs.680226 NM_174952 ENSG00000163116 STPG2 C4orf37 sperm tail PG-rich repeat containing 2 protein-coding 430-189 chr3 61373979 61374335 + 2 NA Intergenic Intergenic -122696 NR_148921 2272 Hs.655995 NM_002012 ENSG00000189283 FHIT AP3Aase|FRA3B fragile histidine triad diadenosine triphosphatase protein-coding 640-4 chr1 119933632 119934113 + 2 NA intron (NM_024408, intron 22 of 33) MLT1J2|LTR|ERVL-MaLR -37357 NM_021794 11085 Hs.283011 NM_021794 ENSG00000134249 ADAM30 svph4 ADAM metallopeptidase domain 30 protein-coding 328-124 chr13 30530321 30530496 + 2 NA intron (NM_001370340, intron 1 of 4) L1ME4b|LINE|L1 -64431 NM_001363661 3146 Hs.434102 NM_002128 ENSG00000189403 HMGB1 HMG-1|HMG1|HMG3|SBP-1 high mobility group box 1 protein-coding 327-422 chr5 150917962 150918161 + 2 NA Intergenic L1ME2z|LINE|L1 -13078 NM_052860 91975 Hs.134885 NM_052860 ENSG00000145908 ZNF300 - zinc finger protein 300 protein-coding 478-316 chrX 50413859 50414177 + 2 NA intron (NM_001013742, intron 4 of 27) L1MA7|LINE|L1 56807 NM_001013742 139189 Hs.38132 NM_001013742 ENSG00000274588 DGKK - diacylglycerol kinase kappa protein-coding 364-348 chr5 64522430 64522773 + 2 NA intron (NM_001029875, intron 2 of 5) intron (NM_001029875, intron 2 of 5) 16586 NM_001029875 401190 Hs.657133 NM_001029875 ENSG00000186479 RGS7BP R7BP regulator of G protein signaling 7 binding protein protein-coding 348-120 chr12 114906324 114906541 + 2 NA Intergenic Intergenic -222257 NM_005996 6926 Hs.744016 NM_005996 ENSG00000135111 TBX3 TBX3-ISO|UMS|XHL T-box transcription factor 3 protein-coding 866-52 chr8 51868414 51869096 + 2 NA intron (NM_001363193, intron 1 of 5) intron (NM_001363193, intron 1 of 5) 30281 NM_001363193 115294 Hs.671268 NM_052937 ENSG00000168300 PCMTD1 - protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 277-218 chr2 240492266 240492462 + 2 NA intron (NM_017844, intron 11 of 13) L1MA4A|LINE|L1 -35664 NR_161169 100130449 Hs.655753 NR_024014 LOC100130449 - uncharacterized LOC100130449 ncRNA 415-144 chr2 205139190 205139410 + 2 NA intron (NM_152526, intron 10 of 21) intron (NM_152526, intron 10 of 21) -543200 NM_201264 8828 Hs.471200 NM_003872 ENSG00000118257 NRP2 NP2|NPN2|PRO2714|VEGF165R2 neuropilin 2 protein-coding 293-402 chr7 48218721 48218971 + 2 NA intron (NM_152701, intron 3 of 61) intron (NM_152701, intron 3 of 61) 47388 NM_152701 154664 Hs.226568 NM_152701 ENSG00000179869 ABCA13 - ATP binding cassette subfamily A member 13 protein-coding 316-77 chr10 76535205 76535484 + 2 NA intron (NM_001305581, intron 6 of 6) intron (NM_001305581, intron 6 of 6) -352700 NR_120655 101929328 Hs.664552 NR_120655 ENSG00000236467 KCNMA1-AS1 - KCNMA1 antisense RNA 1 ncRNA 313-238 chr2 27471082 27471345 + 2 NA intron (NM_015662, intron 15 of 47) intron (NM_015662, intron 15 of 47) 18530 NM_015662 26160 Hs.127401 NM_015662 ENSG00000138002 IFT172 BBS20|NPHP17|RP71|SLB|SRTD10|osm-1|wim intraflagellar transport 172 protein-coding 483-261 chr8 77669546 77669878 + 2 NA Intergenic Intergenic 219015 NR_125830 102724874 Hs.571511 NR_125830 LOC102724874 - uncharacterized LOC102724874 ncRNA 203-150 chr3 89311146 89311294 + 2 NA intron (NM_182644, intron 3 of 6) intron (NM_182644, intron 3 of 6) 203599 NM_182644 2042 Hs.123642 NM_005233 ENSG00000044524 EPHA3 EK4|ETK|ETK1|HEK|HEK4|TYRO4 EPH receptor A3 protein-coding 354-135 chr14 51935885 51936102 + 2 NA intron (NM_001243773, intron 2 of 3) intron (NM_001243773, intron 2 of 3) -17422 NR_126331 102723604 Hs.667541 NR_126331 ENSG00000258928 LOC102723604 - uncharacterized LOC102723604 ncRNA 584-65 chr19 44468812 44469237 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -20446 NM_001278510 7772 Hs.709348 NM_014518 ENSG00000278318 ZNF229 - zinc finger protein 229 protein-coding 431-233 chr5 144669346 144669716 + 2 NA Intergenic Intergenic 464140 NM_001370487 57528 Hs.7093 NM_020768 ENSG00000183775 KCTD16 - potassium channel tetramerization domain containing 16 protein-coding 253-434 chr9 90013508 90013662 + 2 NA Intergenic Intergenic 9950 NR_036253 100422963 NR_036253 ENSG00000263967 MIR4290 - microRNA 4290 ncRNA 503-230 chr5 33639112 33639516 + 2 NA intron (NM_001324512, intron 11 of 21) L2b|LINE|L2 198538 NR_047676 6897 Hs.481860 NM_152295 ENSG00000113407 TARS ThrRS threonyl-tRNA synthetase protein-coding 364-327 chr5 9998514 9998764 + 2 NA Intergenic LTR16A|LTR|ERVL -94815 NR_027112 285692 Hs.651487 NR_027112 ENSG00000249781 LINC02112 - long intergenic non-protein coding RNA 2112 ncRNA 257-412 chr8 99075859 99076081 + 2 NA intron (NR_047582, intron 4 of 8) L1M2|LINE|L1 62704 NM_152564 157680 Hs.191540 NM_015243 ENSG00000132549 VPS13B CHS1|COH1 vacuolar protein sorting 13 homolog B protein-coding 382-338 chr5 126070165 126070446 + 2 NA Intergenic L1MD2|LINE|L1 -109272 NR_105042 102546228 Hs.582529 NR_105042 ENSG00000248107 LINC02039 - long intergenic non-protein coding RNA 2039 ncRNA 185-30 chr10 106664793 106664914 + 2 NA intron (NM_001206569, intron 17 of 25) intron (NM_001206569, intron 17 of 25) 499853 NM_001013031 114815 Hs.591915 NM_052918 ENSG00000108018 SORCS1 hSorCS sortilin related VPS10 domain containing receptor 1 protein-coding 286-143 chr16 5698845 5699023 + 2 NA Intergenic L1ME3C|LINE|L1 66467 NR_107032 102465867 NR_107032 ENSG00000273648 MIR8065 hsa-mir-8065 microRNA 8065 ncRNA 303-64 chr11 32331916 32332132 + 2 NA Intergenic Intergenic 68376 NM_001367854 7490 Hs.591980 NM_000378 ENSG00000184937 WT1 AWT1|GUD|NPHS4|WAGR|WIT-2|WT33 WT1 transcription factor protein-coding 305-119 chr12 41178247 41178440 + 2 NA Intergenic Intergenic -9977 NM_001164595 29951 Hs.380044 NM_013377 ENSG00000165966 PDZRN4 LNX4|SAMCAP3L PDZ domain containing ring finger 4 protein-coding 252-103 chr13 87010771 87011011 + 2 NA Intergenic L1ME3B|LINE|L1 98971 NR_132371 106144533 Hs.525107 NR_132371 LINC00430 - long intergenic non-protein coding RNA 430 ncRNA 262-34 chr1 240697461 240697708 + 2 NA Intergenic AluSg|SINE|Alu -85429 NM_022469 64388 Hs.98206 NM_022469 ENSG00000180875 GREM2 CKTSF1B2|DAND3|PRDC|STHAG9 gremlin 2, DAN family BMP antagonist protein-coding 574-88 chr2 213034531 213034925 + 2 NA intron (NM_001371277, intron 5 of 6) Tigger1|DNA|TcMar-Tigger -108392 NR_039936 100616472 NR_039936 ENSG00000283637 MIR4776-2 mir-4776-2 microRNA 4776-2 ncRNA 422-32 chr10 59644369 59644693 + 2 NA Intergenic L1M2c|LINE|L1 65360 NM_001323980 220963 Hs.499709 NM_194298 ENSG00000165449 SLC16A9 C10orf36|MCT9 solute carrier family 16 member 9 protein-coding 542-175 chr5 107201745 107202122 + 2 NA Intergenic Intergenic -190919 NR_104671 102467213 Hs.570923 NR_104671 ENSG00000251027 LINC01950 - long intergenic non-protein coding RNA 1950 ncRNA 196-38 chr10 110482212 110482373 + 2 NA Intergenic Intergenic -15615 NM_004419 1847 Hs.2128 NM_004419 ENSG00000138166 DUSP5 DUSP|HVH3 dual specificity phosphatase 5 protein-coding 474-22 chr1 214715825 214716237 + 2 NA Intergenic Intergenic 112836 NM_016343 1063 Hs.497741 NM_016343 ENSG00000117724 CENPF CENF|CILD31|PRO1779|STROMS|hcp-1 centromere protein F protein-coding 305-478 chr6 92000203 92000404 + 2 NA Intergenic Tigger4|DNA|TcMar-Tigger -309875 NR_104154 101929083 Hs.586238 NR_104154 CASC6 - cancer susceptibility 6 ncRNA 126-26 chr17 3145327 3145410 + 2 NA intron (NR_147912, intron 3 of 3) L1MDa|LINE|L1 -17817 NM_003555 8390 Hs.248183 NM_003555 ENSG00000183024 OR1G1 OR17-130|OR17-209|OR1G2 olfactory receptor family 1 subfamily G member 1 protein-coding 214-103 chr14 90015008 90015169 + 2 NA intron (NM_001008744, intron 13 of 15) MIR3|SINE|MIR -46906 NM_022054 56659 Hs.510191 NM_022054 ENSG00000152315 KCNK13 K2p13.1|THIK-1|THIK1 potassium two pore domain channel subfamily K member 13 protein-coding 333-102 chr11 125184856 125185149 + 2 NA intron (NM_022062, intron 1 of 12) intron (NM_022062, intron 1 of 12) 20251 NM_022062 63876 Hs.278564 NM_022062 ENSG00000165495 PKNOX2 PREP2 PBX/knotted 1 homeobox 2 protein-coding 278-443 chr8 138284026 138284214 + 2 NA intron (NM_015912, intron 3 of 19) intron (NM_015912, intron 3 of 19) -200575 NR_161374 401478 Hs.654931 NM_001354876 LOC401478 - uncharacterized LOC401478 ncRNA 464-3 chr1 60710316 60710634 + 2 NA intron (NR_110628, intron 4 of 5) L1MA3|LINE|L1 -87790 NR_146508 105378763 Hs.551175 NR_146508 ENSG00000226476 LINC01748 - long intergenic non-protein coding RNA 1748 ncRNA 496-32 chr10 42978206 42978579 + 2 NA TTS (NR_126352) TTS (NR_126352) 3115 NR_126352 104266963 Hs.559152 NR_126352 ENSG00000229630 LINC01264 - long intergenic non-protein coding RNA 1264 ncRNA 452-60 chr12 86757265 86757618 + 2 NA intron (NM_001351286, intron 1 of 7) intron (NM_001351286, intron 1 of 7) -12292 NR_162123 113839519 NR_162123 MIR3059 - microRNA 3059 ncRNA 339-45 chr1 233711392 233711717 + 2 NA Intergenic Intergenic 87402 NR_039625 100616390 NR_039625 ENSG00000265744 MIR4427 - microRNA 4427 ncRNA 391-105 chr14 62431438 62431755 + 2 NA Intergenic Intergenic -291623 NR_104063 101954204 Hs.607093 NR_104063 ENSG00000259142 LINC00644 - long intergenic non-protein coding RNA 644 ncRNA 281-467 chrX 53336694 53336869 + 2 NA Intergenic L1MC|LINE|L1 -15431 NM_001111125 23096 Hs.496138 NM_015075 ENSG00000124313 IQSEC2 BRAG1|IQ-ArfGEF|MRX1|MRX18|MRX78 IQ motif and Sec7 domain 2 protein-coding 598-50 chr16 35140794 35141195 + 2 NA Intergenic SST1|Satellite|centr 29397 NR_002837 606551 Hs.646441 NR_002837 UBE2MP1 - ubiquitin conjugating enzyme E2 M pseudogene 1 pseudo 225-404 chrX 33808100 33808309 + 2 NA Intergenic L1MA1|LINE|L1 324126 NM_203408 158724 Hs.143268 NM_203408 ENSG00000185448 FAM47A - family with sequence similarity 47 member A protein-coding 209-101 chr14 88981271 88981411 + 2 NA Intergenic L1ME1|LINE|L1 156690 NM_001366536 123016 Hs.303055 NM_144596 ENSG00000165533 TTC8 BBS8|RP51 tetratricopeptide repeat domain 8 protein-coding 247-310 chr4 184262505 184262636 + 2 NA Intergenic L1ME4a|LINE|L1 -44697 NM_153343 133121 Hs.297814 NM_153343 ENSG00000164303 ENPP6 NPP6 ectonucleotide pyrophosphatase/phosphodiesterase 6 protein-coding 129-18 chr14 54911781 54911903 + 2 NA Intergenic Intergenic -9016 NM_000161 2643 Hs.86724 NM_000161 ENSG00000131979 GCH1 DYT14|DYT5|DYT5a|GCH|GTP-CH-1|GTPCH1|HPABH4B GTP cyclohydrolase 1 protein-coding 246-395 chr8 74172312 74172550 + 2 NA Intergenic LTR24|LTR|ERV1 148930 NM_001363051 56704 Hs.657367 NM_020647 ENSG00000104369 JPH1 CMT2K|JP-1|JP1 junctophilin 1 protein-coding 572-120 chr4 35575654 35576021 + 2 NA Intergenic L1ME1|LINE|L1 668102 NR_146893 116984 Hs.479451 NM_015230 ENSG00000047365 ARAP2 CENTD1|PARX ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 protein-coding 234-278 chr4 73714838 73714971 + 2 NA Intergenic Intergenic -25665 NM_001354840 3576 Hs.624 NM_000584 ENSG00000169429 CXCL8 GCP-1|GCP1|IL8|LECT|LUCT|LYNAP|MDNCF|MONAP|NAF|NAP-1|NAP1 C-X-C motif chemokine ligand 8 protein-coding 319-159 chr15 63717453 63717658 + 2 NA intron (NM_003922, intron 21 of 77) intron (NM_003922, intron 21 of 77) 116393 NM_003922 8925 Hs.210385 NM_003922 ENSG00000103657 HERC1 MDFPMR|p532|p619 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 protein-coding 845-13 chr18 42487562 42488170 + 2 NA intron (NR_046174, intron 6 of 9) intron (NR_046174, intron 6 of 9) 301198 NR_046454 284260 Hs.652819 NR_046174 ENSG00000267586 LINC00907 - long intergenic non-protein coding RNA 907 ncRNA 724-2 chr1 75567996 75568447 + 2 NA intron (NM_152697, intron 1 of 23) intron (NM_152697, intron 1 of 23) 42893 NM_001130058 204962 Hs.654821 NM_152697 ENSG00000137968 SLC44A5 CTL5 solute carrier family 44 member 5 protein-coding 323-286 chr2 214515356 214515628 + 2 NA intron (NR_047698, intron 1 of 3) intron (NR_047698, intron 1 of 3) 5310 NR_047698 100885780 Hs.665982 NR_047698 ENSG00000224257 VWC2L-IT1 - VWC2L intronic transcript 1 ncRNA 313-143 chr14 53163582 53163846 + 2 NA Intergenic Intergenic 10360 NR_110062 101927620 NR_110062 ENSG00000258731 LOC101927620 - uncharacterized LOC101927620 ncRNA 535-187 chr4 115156586 115156928 + 2 NA Intergenic Intergenic -43137 NM_022569 64579 Hs.591700 NM_022569 ENSG00000138653 NDST4 N-HSST|N-HSST 4|NDST-4|NHSST4 N-deacetylase and N-sulfotransferase 4 protein-coding 244-125 chr16 86060429 86060599 + 2 NA Intergenic Intergenic -135667 NR_103859 100506542 Hs.111902 NR_103859 ENSG00000269186 LINC01082 TCONS_00024492 long intergenic non-protein coding RNA 1082 ncRNA 239-386 chr7 119553361 119553514 + 2 NA Intergenic Intergenic 353938 NR_131960 105375475 Hs.566654 NR_131960 ENSG00000225546 LINC02476 LVCAT5 long intergenic non-protein coding RNA 2476 ncRNA 359-120 chr12 67087166 67087432 + 2 NA intron (NR_120490, intron 3 of 3) intron (NR_120490, intron 3 of 3) 8985 NR_120490 102724421 Hs.135774 NR_120490 ENSG00000257083 LOC102724421 - uncharacterized LOC102724421 ncRNA 245-89 chr12 4346834 4347062 + 2 NA intron (NM_020375, intron 3 of 5) L1MA2|LINE|L1 25735 NM_020375 57103 Hs.504545 NM_020375 ENSG00000078237 TIGAR C12orf5|FR2BP TP53 induced glycolysis regulatory phosphatase protein-coding 270-290 chr5 26650946 26651106 + 2 NA Intergenic Intergenic 387560 NM_016279 1007 Hs.272212 NM_016279 ENSG00000113100 CDH9 - cadherin 9 protein-coding 228-38 chr10 55717509 55717672 + 2 NA Intergenic Intergenic -89648 NM_001354404 65217 Hs.280209 NM_033056 ENSG00000150275 PCDH15 CDHR15|DFNB23|USH1F protocadherin related 15 protein-coding 194-36 chr12 3934620 3934779 + 2 NA Intergenic AluY|SINE|Alu -61251 NM_001286521 57097 Hs.657268 NM_020367 ENSG00000111224 PARP11 ARTD11|C12orf6|MIB006 poly(ADP-ribose) polymerase family member 11 protein-coding 218-174 chr2 166621420 166621569 + 2 NA Intergenic L1MA3|LINE|L1 -134523 NR_045628 6332 Hs.596087 NM_002976 ENSG00000136546 SCN7A NaG|Nav2.1|Nav2.2|SCN6A sodium voltage-gated channel alpha subunit 7 protein-coding 185-65 chr14 87379195 87379331 + 2 NA Intergenic Intergenic 276031 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 337-353 chr3 67501298 67501583 + 2 NA intron (NM_001177599, intron 7 of 10) MER21C|LTR|ERVL 153174 NM_003848 8801 Hs.644919 NM_003848 ENSG00000172340 SUCLG2 G-SCS|GBETA|GTPSCS succinate-CoA ligase GDP-forming beta subunit protein-coding 172-2 chr1 81945179 81945280 + 2 NA intron (NM_001366002, intron 6 of 20) intron (NM_001366002, intron 6 of 20) 142776 NM_001366007 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 542-245 chrX 86813629 86814153 + 2 NA intron (NM_001139515, intron 9 of 11) intron (NM_001139515, intron 9 of 11) 550923 NM_001139515 117154 Hs.86603 NM_053281 ENSG00000126733 DACH2 - dachshund family transcription factor 2 protein-coding 239-17 chr1 234058700 234058848 + 2 NA intron (NM_173508, intron 2 of 7) L1MB8|LINE|L1 154098 NM_173508 148641 Hs.158748 NM_173508 ENSG00000183780 SLC35F3 - solute carrier family 35 member F3 protein-coding 123-16 chr12 104794083 104794177 + 2 NA Intergenic Intergenic 164160 NM_001352171 84102 Hs.577463 NM_032148 ENSG00000136052 SLC41A2 SLC41A1-L1 solute carrier family 41 member 2 protein-coding 382-4 chr1 30278163 30278440 + 2 NA Intergenic MIR|SINE|MIR -240689 NR_110790 101929406 Hs.639413 NR_110790 ENSG00000233399 LINC01648 - long intergenic non-protein coding RNA 1648 ncRNA 538-146 chr3 9241402 9241775 + 2 NA intron (NM_014850, intron 1 of 21) intron (NM_014850, intron 1 of 21) 8058 NM_001033117 9901 Hs.654743 NM_014850 ENSG00000196220 SRGAP3 ARHGAP14|MEGAP|SRGAP2|WRP SLIT-ROBO Rho GTPase activating protein 3 protein-coding 358-177 chr19 23125809 23126019 + 2 NA intron (NM_001277403, intron 1 of 3) intron (NM_001277403, intron 1 of 3) 8889 NM_001277403 100129543 Hs.427120 NM_001277403 ENSG00000183850 ZNF730 - zinc finger protein 730 protein-coding 259-126 chr14 83339014 83339234 + 2 NA Intergenic L1M4c|LINE|L1 696492 NR_146650 101928599 NR_146650 ENSG00000258743 LINC02301 - long intergenic non-protein coding RNA 2301 ncRNA 477-113 chr16 83515449 83515775 + 2 NA intron (NM_001220489, intron 6 of 12) intron (NM_001220489, intron 6 of 12) 7266 NR_036147 100422853 NR_036147 ENSG00000263785 MIR3182 mir-3182 microRNA 3182 ncRNA 315-496 chr8 132424508 132424736 + 2 NA intron (NM_004519, intron 1 of 14) MLT1C|LTR|ERVL-MaLR 22640 NM_001204824 3786 Hs.374023 NM_004519 ENSG00000184156 KCNQ3 BFNC2|EBN2|KV7.3 potassium voltage-gated channel subfamily Q member 3 protein-coding 294-320 chr4 30355869 30356034 + 2 NA Intergenic Intergenic -364418 NM_032457 5099 Hs.479439 NM_002589 ENSG00000169851 PCDH7 BH-Pcdh|BHPCDH|PPP1R120 protocadherin 7 protein-coding 708-17 chr12 4228852 4229243 + 2 NA Intergenic AluJr|SINE|Alu -44715 NM_001759 894 Hs.376071 NM_001759 ENSG00000118971 CCND2 KIAK0002|MPPH3 cyclin D2 protein-coding 321-275 chr2 5974151 5974363 + 2 NA promoter-TSS (NR_106980) promoter-TSS (NR_106980) -405 NR_106980 102465693 NR_106980 ENSG00000276733 MIR7158 hsa-mir-7158 microRNA 7158 ncRNA 297-195 chr2 4962286 4962498 + 2 NA Intergenic Intergenic -306170 NR_034134 727982 Hs.444391 NR_034134 ENSG00000231532 LINC01249 - long intergenic non-protein coding RNA 1249 ncRNA 365-401 chr8 91703298 91703604 + 2 NA Intergenic L1MA1|LINE|L1 314229 NM_175636 862 Hs.368431 NM_004349 ENSG00000079102 RUNX1T1 AML1-MTG8|AML1T1|CBFA2T1|CDR|ETO|MTG8|ZMYND2 RUNX1 partner transcriptional co-repressor 1 protein-coding 295-384 chr5 101665859 101666078 + 2 NA Intergenic Intergenic 630316 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 254-151 chr17 14923856 14924008 + 2 NA Intergenic Intergenic -90873 NR_135638 101928475 Hs.638944 NR_135638 ENSG00000232058 LOC101928475 - uncharacterized LOC101928475 ncRNA 316-518 chr7 62757997 62758255 + 2 NA Intergenic ALR/Alpha|Satellite|centr 545930 NR_003952 643955 Hs.583308 NR_003952 ENSG00000185037 ZNF733P ZNF733 zinc finger protein 733, pseudogene pseudo 319-161 chr15 86139497 86139756 + 2 NA intron (NM_152336, intron 1 of 24) intron (NM_152336, intron 1 of 24) -22909 NR_120368 101929701 Hs.132570 NR_120368 ENSG00000260477 LINC01584 - long intergenic non-protein coding RNA 1584 ncRNA 346-543 chrX 94737733 94737917 + 2 NA Intergenic L1PA10|LINE|L1 325401 NR_031667 100313772 NR_031667 ENSG00000221187 MIR548M MIRN548M microRNA 548m ncRNA 313-150 chr14 62756512 62756745 + 2 NA intron (NM_172375, intron 9 of 9) L1MA2|LINE|L1 288830 NM_139318 27133 Hs.27043 NM_139318 ENSG00000140015 KCNH5 EAG2|H-EAG2|Kv10.2|hEAG2 potassium voltage-gated channel subfamily H member 5 protein-coding 450-30 chr10 27914504 27914861 + 2 NA intron (NM_001290021, intron 9 of 13) (TA)n|Simple_repeat|Simple_repeat 67189 NM_001290021 55130 Hs.127530 NM_018076 ENSG00000169126 ARMC4 CILD23 armadillo repeat containing 4 protein-coding 140-19 chr12 44421594 44421693 + 2 NA Intergenic LTR82B|LTR|ERVL 454018 NM_001145109 4753 Hs.505326 NM_006159 ENSG00000184613 NELL2 NRP2 neural EGFL like 2 protein-coding 246-186 chr2 26502705 26502884 + 2 NA intron (NM_194248, intron 6 of 46) MIRb|SINE|MIR -24670 NM_194322 9381 Hs.91608 NM_004802 ENSG00000115155 OTOF AUNB1|DFNB6|DFNB9|FER1L2|NSRD9 otoferlin protein-coding 230-222 chr22 30344593 30344755 + 2 NA intron (NM_005877, intron 4 of 15) intron (NM_005877, intron 4 of 15) -11950 NM_001318334 550631 Hs.505597 NM_001017437 ENSG00000187860 CCDC157 - coiled-coil domain containing 157 protein-coding 379-9 chr1 68453490 68453838 + 2 NA Intergenic Intergenic -3710 NM_000329 6121 Hs.2133 NM_000329 ENSG00000116745 RPE65 BCO3|LCA2|RP20|mRPE65|p63|rd12|sRPE65 retinoid isomerohydrolase RPE65 protein-coding 341-71 chr10 108673518 108673779 + 2 NA Intergenic MIR|SINE|MIR -604355 NR_125760 103695365 Hs.648991 NR_125760 ENSG00000229981 LINC01435 TCONS_00018040 long intergenic non-protein coding RNA 1435 ncRNA 361-360 chr5 50252338 50252592 + 2 NA Intergenic ALR/Alpha|Satellite|centr 188823 NM_198449 133418 Hs.561411 NM_198449 ENSG00000170571 EMB GP70 embigin protein-coding 242-323 chr5 130279964 130280146 + 2 NA Intergenic Intergenic 375590 NM_175856 337876 Hs.213137 NM_175856 ENSG00000198108 CHSY3 CHSY2|CSS3 chondroitin sulfate synthase 3 protein-coding 414-182 chr20 17356725 17357029 + 2 NA intron (NM_002594, intron 2 of 11) intron (NM_002594, intron 2 of 11) 129837 NM_002594 5126 Hs.315186 NM_002594 ENSG00000125851 PCSK2 NEC 2|NEC-2|NEC2|PC2|SPC2 proprotein convertase subtilisin/kexin type 2 protein-coding 270-84 chr12 46506035 46506299 + 2 NA intron (NR_125380, intron 3 of 3) L1M4c|LINE|L1 122060 NR_125381 100288798 Hs.525922 NR_125377 LOC100288798 - uncharacterized LOC100288798 ncRNA 384-281 chr5 13967429 13967795 + 2 NA Intergenic L1PB1|LINE|L1 -23132 NM_001369 1767 Hs.212360 NM_001369 ENSG00000039139 DNAH5 CILD3|DNAHC5|HL1|KTGNR|PCD dynein axonemal heavy chain 5 protein-coding 246-310 chr5 4589125 4589285 + 2 NA Intergenic Intergenic -184276 NR_104619 101929153 Hs.385526 NR_104619 ENSG00000249521 LINC02114 - long intergenic non-protein coding RNA 2114 ncRNA 404-303 chr8 30469568 30469868 + 2 NA intron (NM_001008710, intron 1 of 8) intron (NM_001008710, intron 1 of 8) -84317 NR_046205 100128750 Hs.126813 NR_046205 ENSG00000254109 RBPMS-AS1 - RBPMS antisense RNA 1 ncRNA 361-200 chr2 7758827 7759063 + 2 NA Intergenic L1M5|LINE|L1 140710 NR_110256 101929551 Hs.116006 NR_110256 ENSG00000226506 LOC101929551 - uncharacterized LOC101929551 ncRNA 175-161 chr8 53273955 53274044 + 2 NA Intergenic L1MB8|LINE|L1 -22302 NM_001282904 4986 Hs.106795 NM_000912 ENSG00000082556 OPRK1 K-OR-1|KOR|KOR-1|OPRK opioid receptor kappa 1 protein-coding 700-53 chr2 230937855 230938335 + 2 NA Intergenic AluJb|SINE|Alu -12853 NM_005683 9290 Hs.114545 NM_005683 ENSG00000135898 GPR55 LPIR1 G protein-coupled receptor 55 protein-coding 278-204 chr2 37078769 37078988 + 2 NA intron (NM_019024, intron 3 of 35) L2|LINE|L2 5494 NM_019024 54497 Hs.744084 NM_019024 ENSG00000008869 HEATR5B - HEAT repeat containing 5B protein-coding 313-36 chr1 236519476 236519652 + 2 NA intron (NM_201545, intron 2 of 11) intron (NM_201545, intron 2 of 11) 1350 NM_201545 3964 Hs.4082 NM_006499 ENSG00000116977 LGALS8 Gal-8|PCTA-1|PCTA1|Po66-CBP galectin 8 protein-coding 330-510 chr8 61936286 61936558 + 2 NA Intergenic Intergenic 46583 NR_149085 111082988 Hs.521600 NR_149085 ENSG00000254120 LINC02155 - long intergenic non-protein coding RNA 2155 ncRNA 229-394 chr8 107896180 107896341 + 2 NA Intergenic MER11B|LTR|ERVK 185679 NM_001317942 340419 Hs.444834 NM_178565 ENSG00000147655 RSPO2 CRISTIN2|HHRRD|TETAMS2 R-spondin 2 protein-coding 294-278 chr22 34723866 34724019 + 2 NA Intergenic Intergenic 273974 NR_138042 101926957 Hs.722607 NR_138042 ISX-AS1 - ISX antisense RNA 1 ncRNA 616 chr1 17752596 17753199 + 2 NA Intergenic MER66B|LTR|ERV1 -2436 NM_030812 81569 Hs.2149 NM_030812 ENSG00000117148 ACTL8 CT57 actin like 8 protein-coding 534-101 chr18 78930710 78931079 + 2 NA Intergenic Intergenic -49381 NM_171999 27164 Hs.700557 NM_171999 ENSG00000256463 SALL3 ZNF796 spalt like transcription factor 3 protein-coding 267-297 chr4 101352133 101352385 + 2 NA Intergenic Intergenic 4482 NR_033874 90024 Hs.534513 NR_033874 ENSG00000254531 FLJ20021 - uncharacterized LOC90024 ncRNA 254-181 chr2 48828816 48828993 + 2 NA Intergenic L1PA12|LINE|L1 -73180 NM_000233 3973 Hs.468490 NM_000233 ENSG00000138039 LHCGR HHG|LCGR|LGR2|LH/CG-R|LH/CGR|LHR|LHRHR|LSH-R|ULG5 luteinizing hormone/choriogonadotropin receptor protein-coding 563-6 chr1 186976975 186977450 + 2 NA intron (NM_024420, intron 15 of 17) intron (NM_024420, intron 15 of 17) -115630 NR_126347 104169671 NR_126347 ENSG00000230426 LINC01036 - long intergenic non-protein coding RNA 1036 ncRNA 193-33 chr11 15001983 15002138 + 2 NA Intergenic Intergenic -29709 NR_125898 796 Hs.37058 NM_001741 ENSG00000110680 CALCA CALC1|CGRP|CGRP-I|CGRP1|CT|KC|PCT calcitonin related polypeptide alpha protein-coding 288-328 chr5 58090193 58090445 + 2 NA Intergenic Tigger3b|DNA|TcMar-Tigger 32022 NR_104669 101928569 Hs.319708 NR_104669 LINC02101 - long intergenic non-protein coding RNA 2101 ncRNA 298-221 chr2 86046811 86047042 + 2 NA intron (NM_015425, intron 19 of 33) (TATA)n|Simple_repeat|Simple_repeat 58960 NM_015425 25885 Hs.531818 NM_015425 ENSG00000068654 POLR1A A190|AFDCIN|RPA1|RPA194|RPO1-4|RPO14 RNA polymerase I subunit A protein-coding 827-57 chr8 134344675 134345323 + 2 NA Intergenic L2a|LINE|L2 -253072 NR_002438 594840 Hs.626298 NR_002438 ENSG00000248492 ZFAT-AS1 NCRNA00070|SAS-ZFAT|ZFAT-AS|ZFATAS ZFAT antisense RNA 1 ncRNA 540-104 chr19 43816107 43816565 + 2 NA intron (NM_182573, intron 1 of 4) ERV3-16A3_I-int|LTR|ERVL 4320 NM_182573 284348 Hs.44289 NM_182573 ENSG00000159871 LYPD5 PRO4356 LY6/PLAUR domain containing 5 protein-coding 359-293 chr20 62540749 62540930 + 2 NA Intergenic Intergenic -9614 NM_178463 128826 Hs.86507 NM_178463 MIR1-1HG C20orf166|MIR133A2HG MIR1-1 host gene protein-coding 290-473 chr8 137365434 137365646 + 2 NA Intergenic Intergenic 48048 NR_125428 101927915 Hs.695851 NR_125428 LOC101927915 - uncharacterized LOC101927915 ncRNA 286-137 chr15 75511060 75511304 + 2 NA intron (NM_002833, intron 5 of 12) intron (NM_002833, intron 5 of 12) -55367 NM_001145357 25942 Hs.513039 NM_015477 ENSG00000169375 SIN3A WITKOS SIN3 transcription regulator family member A protein-coding 312-403 chr5 17255236 17255411 + 2 NA intron (NM_006317, intron 1 of 1) intron (NM_006317, intron 1 of 1) 37692 NM_006317 10409 Hs.201641 NM_006317 ENSG00000176788 BASP1 CAP-23|CAP23|NAP-22|NAP22 brain abundant membrane attached signal protein 1 protein-coding 223-7 chr1 69497544 69497678 + 2 NA Intergenic LTR101_Mam|LTR|ERVL 64356 NR_147164 105378788 Hs.164441 NR_147164 ENSG00000229639 LINC01758 - long intergenic non-protein coding RNA 1758 ncRNA 334-249 chr2 31342116 31342329 + 2 NA exon (NM_000379, exon 32 of 36) exon (NM_000379, exon 32 of 36) 72520 NM_000379 7498 Hs.250 NM_000379 ENSG00000158125 XDH XAN1|XO|XOR xanthine dehydrogenase protein-coding 279-29 chr10 24178649 24178824 + 2 NA intron (NM_001098500, intron 2 of 18) intron (NM_001098500, intron 2 of 18) -30055 NM_001282767 56243 Hs.445885 NM_019590 ENSG00000120549 KIAA1217 ETL4|SKT KIAA1217 protein-coding 493-268 chr7 11872165 11872550 + 2 NA Intergenic THE1B|LTR|ERVL-MaLR -40159 NM_015204 221981 Hs.120855 NM_015204 ENSG00000005108 THSD7A - thrombospondin type 1 domain containing 7A protein-coding 235-190 chr2 188673940 188674139 + 2 NA Intergenic Intergenic 116084 NR_161166 116093 Hs.470892 NM_052952 ENSG00000174325 DIRC1 - disrupted in renal carcinoma 1 ncRNA 249-462 chrX 47456715 47456856 + 2 NA intron (NM_001324149, intron 1 of 3) intron (NM_001324149, intron 1 of 3) 10884 NM_001324156 7592 Hs.496074 NM_007130 ENSG00000147124 ZNF41 MRX89 zinc finger protein 41 protein-coding 390-392 chr8 113096643 113096955 + 2 NA intron (NM_001363185, intron 5 of 66) L2a|LINE|L2 280353 NM_198124 114788 Hs.91381 NM_052900 ENSG00000164796 CSMD3 - CUB and Sushi multiple domains 3 protein-coding 350-38 chr10 25170186 25170521 + 2 NA intron (NR_027333, intron 1 of 1) intron (NR_027333, intron 1 of 1) -4648 NM_020752 57512 Hs.499108 NM_020752 ENSG00000151025 GPR158 - G protein-coupled receptor 158 protein-coding 352-532 chr8 88868314 88868540 + 2 NA Intergenic L1MD2|LINE|L1 -540944 NM_005941 4325 Hs.492187 NM_005941 ENSG00000156103 MMP16 C8orf57|MMP-X2|MT-MMP2|MT-MMP3|MT3-MMP matrix metallopeptidase 16 protein-coding 196-93 chr16 54088454 54088588 + 2 NA intron (NM_001363988, intron 9 of 9) intron (NM_001363988, intron 9 of 9) 49128 NR_103838 100505692 Hs.664629 NR_103838 FTO-IT1 - FTO intronic transcript 1 ncRNA 327-494 chr8 97509249 97509485 + 2 NA Intergenic MIRb|SINE|MIR -62870 NR_125390 101927066 Hs.732112 NR_125390 LOC101927066 - uncharacterized LOC101927066 ncRNA 499-268 chr8 106961184 106961530 + 2 NA Intergenic Intergenic -191113 NM_139166 137735 Hs.374668 NM_139166 ENSG00000174429 ABRA STARS actin binding Rho activating protein protein-coding 347-101 chr12 99686711 99687051 + 2 NA intron (NM_152788, intron 8 of 25) L1MEc|LINE|L1 39128 NM_153364 196472 Hs.591011 NM_153364 ENSG00000180219 FAM71C - family with sequence similarity 71 member C protein-coding 424-99 chr17 59446927 59447242 + 2 NA intron (NR_110813, intron 2 of 2) L1MC4|LINE|L1 79773 NR_110813 101927728 Hs.569720 NR_110813 ENSG00000265313 LINC01476 - long intergenic non-protein coding RNA 1476 ncRNA 368-370 chr5 113885518 113885776 + 2 NA Intergenic L1MEd|LINE|L1 371953 NM_001345975 64848 Hs.231942 NM_022828 ENSG00000047188 YTHDC2 CAHL|hYTHDC2 YTH domain containing 2 protein-coding 314-268 chr2 23250620 23250866 + 2 NA Intergenic Intergenic -134436 NM_052920 114818 Hs.130593 NM_025067 ENSG00000119771 KLHL29 KBTBD9 kelch like family member 29 protein-coding 437-110 chr18 62466722 62467103 + 2 NA Intergenic Intergenic -56113 NR_126534 54877 Hs.114191 NM_017742 ENSG00000141664 ZCCHC2 C18orf49 zinc finger CCHC-type containing 2 protein-coding 522-186 chr4 2578398 2578792 + 2 NA intron (NM_001366318, intron 1 of 20) Tigger2|DNA|TcMar-Tigger 41948 NM_001366318 8603 Hs.652364 NM_003704 ENSG00000125386 FAM193A C4orf8|RES4-22 family with sequence similarity 193 member A protein-coding 425-28 chr10 15489096 15489391 + 2 NA Intergenic L1M5|LINE|L1 -117954 NM_001010924 221061 Hs.66762 NM_001010924 ENSG00000148468 FAM171A1 APCN|C10orf38 family with sequence similarity 171 member A1 protein-coding 266-381 chr6 150383019 150383238 + 2 NA intron (NM_001318495, intron 1 of 4) L1MEg|LINE|L1 14116 NM_203395 389434 Hs.310225 NM_203395 ENSG00000009765 IYD C6orf71|DEHAL1|IYD-1|TDH4 iodotyrosine deiodinase protein-coding 170-6 chr1 81078263 81078365 + 2 NA Intergenic L1MB3|LINE|L1 -227878 NM_001366003 23266 Hs.24212 NM_012302 ENSG00000117114 ADGRL2 CIRL2|CL2|LEC1|LPHH1|LPHN2 adhesion G protein-coupled receptor L2 protein-coding 342-193 chr17 57384280 57384514 + 2 NA intron (NM_001322250, intron 5 of 13) MLT1G|LTR|ERVL-MaLR 127378 NM_170721 124540 Hs.658922 NM_138962 ENSG00000153944 MSI2 MSI2H musashi RNA binding protein 2 protein-coding 277-27 chr1 187441951 187442093 + 2 NA Intergenic MSTA|LTR|ERVL-MaLR -1606 NR_132374 106144535 Hs.568709 NR_132374 LINC01037 - long intergenic non-protein coding RNA 1037 ncRNA 642-52 chr2 29528292 29528826 + 2 NA intron (NM_004304, intron 4 of 28) L2c|LINE|L2 -53182 NR_136317 105374389 Hs.196534 NR_136317 LOC105374389 - uncharacterized LOC105374389 ncRNA 292-447 chr8 132851215 132851469 + 2 NA Intergenic L1MC|LINE|L1 -15616 NM_003235 7038 Hs.654591 NM_003235 ENSG00000042832 TG AITD3|TGN thyroglobulin protein-coding 557-108 chr2 125754724 125755153 + 2 NA Intergenic Intergenic 363047 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 559-202 chr9 98046175 98046553 + 2 NA Intergenic MER57-int|LTR|ERV1 -10368 NM_018946 54187 Hs.522310 NM_018946 ENSG00000095380 NANS HEL-S-100|SAS|SEMDCG|SEMDG N-acetylneuraminate synthase protein-coding 291-187 chr18 35313838 35314010 + 2 NA Intergenic L1M3|LINE|L1 23652 NR_024565 10778 Hs.314246 NM_006629 ENSG00000257267 ZNF271P CT-ZFP48|HZF7|ZNF-EB|ZNF-dp|ZNF271|ZNFEB zinc finger protein 271, pseudogene pseudo 655-102 chr5 161660446 161660805 + 2 NA Intergenic L1MC3|LINE|L1 -25096 NM_000811 2559 Hs.90791 NM_000811 ENSG00000145863 GABRA6 - gamma-aminobutyric acid type A receptor alpha6 subunit protein-coding 494-211 chr4 153778999 153779344 + 2 NA Intergenic Intergenic 9912 NM_003013 6423 Hs.481022 NM_003013 ENSG00000145423 SFRP2 FRP-2|SARP1|SDF-5 secreted frizzled related protein 2 protein-coding 460-255 chr6 40099253 40099684 + 2 NA Intergenic L1PA7|LINE|L1 -165006 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 307-181 chr16 83664355 83664611 + 2 NA intron (NM_001220489, intron 7 of 12) (TA)n|Simple_repeat|Simple_repeat 139493 NR_120308 102724163 NR_120308 ENSG00000260228 LOC102724163 - uncharacterized LOC102724163 ncRNA 529-176 chr5 88866887 88867303 + 2 NA intron (NM_001131005, intron 2 of 10) intron (NM_001131005, intron 2 of 10) 16089 NM_001364347 4208 Hs.649965 NM_002397 ENSG00000081189 MEF2C C5DELq14.3|DEL5q14.3 myocyte enhancer factor 2C protein-coding 367-368 chr5 108688584 108688839 + 2 NA Intergenic Intergenic 39550 NR_046368 100652853 Hs.133009 NR_046368 ENSG00000272523 LINC01023 HP07349 long intergenic non-protein coding RNA 1023 ncRNA 143-41 chr2 103632112 103632211 + 2 NA Intergenic LTR47B3|LTR|ERVL -647732 NR_135530 105373519 NR_135530 ENSG00000224095 LINC01935 - long intergenic non-protein coding RNA 1935 ncRNA 319-371 chr4 60281439 60281609 + 2 NA Intergenic L1M2|LINE|L1 -641095 NR_039652 100616450 NR_039652 ENSG00000265829 MIR548AG1 - microRNA 548ag-1 ncRNA 589-81 chr20 44851482 44852025 + 2 NA Intergenic Intergenic -33952 NM_003404 7529 Hs.643544 NM_003404 ENSG00000166913 YWHAB GW128|HEL-S-1|HS1|KCIP-1|YWHAA tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta protein-coding 269-89 chr12 54614981 54615146 + 2 NA Intergenic Intergenic -4601 NR_003039 644076 Hs.483519 NR_003039 ENSG00000257780 GLYCAM1 - glycosylation dependent cell adhesion molecule 1 (pseudogene) pseudo 368-440 chr8 16359329 16359610 + 2 NA Intergenic Intergenic -166678 NM_138716 4481 Hs.147635 NM_002445 ENSG00000038945 MSR1 CD204|SCARA1|SR-A|SR-AI|SR-AII|SR-AIII|SRA|phSR1|phSR2 macrophage scavenger receptor 1 protein-coding 279-85 chr12 125391663 125391905 + 2 NA intron (NM_052907, intron 2 of 8) AluJb|SINE|Alu 65168 NM_052907 114795 Hs.524838 NM_052907 ENSG00000139364 TMEM132B - transmembrane protein 132B protein-coding 557-107 chr2 125295720 125296240 + 2 NA Intergenic L1MA2|LINE|L1 822005 NR_146970 105373600 Hs.555059 NR_146970 ENSG00000226813 LINC01941 - long intergenic non-protein coding RNA 1941 ncRNA 222-99 chr13 70696407 70696574 + 2 NA Intergenic Intergenic -318651 NR_047699 100885781 Hs.372660 NR_047699 ENSG00000226846 LINC00348 - long intergenic non-protein coding RNA 348 ncRNA 659-2 chr1 106113323 106113801 + 2 NA Intergenic Intergenic -85309 NR_146609 105378884 Hs.568533 NR_146609 LINC01677 - long intergenic non-protein coding RNA 1677 ncRNA 589-18 chr11 62329055 62329451 + 2 NA Intergenic AluSg|SINE|Alu -8195 NM_025080 80150 Hs.535326 NM_025080 ENSG00000162174 ASRGL1 ALP|ALP1|CRASH asparaginase like 1 protein-coding 383-211 chr2 198856931 198857282 + 2 NA Intergenic Charlie1|DNA|hAT-Charlie -482009 NR_110267 101927619 Hs.632942 NR_110267 LINC01923 - long intergenic non-protein coding RNA 1923 ncRNA 531-197 chr5 38678035 38678522 + 2 NA Intergenic Intergenic 41995 NR_104631 101926904 Hs.634191 NR_104631 ENSG00000249740 LINC01265 - long intergenic non-protein coding RNA 1265 ncRNA 422-23 chr1 239499240 239499564 + 2 NA intron (NM_001347716, intron 2 of 7) L2b|LINE|L2 112834 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 224-275 chr6 40094947 40095113 + 2 NA Intergenic Intergenic -160568 NM_001075098 4337 Hs.357128 NM_005942 ENSG00000124615 MOCS1 MIG11|MOCOD|MOCS1A|MOCS1B molybdenum cofactor synthesis 1 protein-coding 409-75 chr14 59692059 59692445 + 2 NA intron (NM_021136, intron 3 of 8) L1PA15-16|LINE|L1 -45232 NR_049851 100847088 NR_049851 ENSG00000263629 MIR5586 - microRNA 5586 ncRNA 344-313 chr3 67244856 67245094 + 2 NA Intergenic Intergenic 19511 NR_036234 100422941 NR_036234 ENSG00000283298 MIR4272 - microRNA 4272 ncRNA 173-94 chr3 110581544 110581668 + 2 NA Intergenic L1PA16|LINE|L1 488353 NR_045114 100506555 Hs.535689 NR_045114 NECTIN3-AS1 PVRL3-AS1 NECTIN3 antisense RNA 1 ncRNA 304-489 chr7 47919347 47919531 + 2 NA intron (NM_138295, intron 7 of 56) L1PB1|LINE|L1 29052 NM_138295 168507 Hs.195979 NM_138295 ENSG00000158683 PKD1L1 HTX8|PRO19563 polycystin 1 like 1, transient receptor potential channel interacting protein-coding 826-15 chr12 38683310 38683925 + 2 NA intron (NM_153634, intron 16 of 19) intron (NM_153634, intron 16 of 19) 221974 NM_153634 144402 Hs.40910 NM_153634 ENSG00000139117 CPNE8 - copine 8 protein-coding 514-209 chr4 109774008 109774379 + 2 NA intron (NM_001331035, intron 1 of 11) L2a|LINE|L2 27806 NM_001331035 3426 Hs.312485 NM_000204 ENSG00000205403 CFI AHUS3|ARMD13|C3BINA|C3b-INA|FI|IF|KAF complement factor I protein-coding 348-159 chr15 62514798 62515024 + 2 NA Intergenic Intergenic 130270 NR_026897 197003 Hs.352253 NM_152648 ENSG00000259458 MGC15885 - uncharacterized protein MGC15885 ncRNA 357-351 chr5 101511622 101511951 + 2 NA Intergenic Intergenic -608504 NM_175052 7903 Hs.308628 NM_005668 ENSG00000113532 ST8SIA4 PST|PST1|SIAT8D|ST8SIA-IV ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 306-248 chr2 119250007 119250253 + 2 NA intron (NM_138637, intron 3 of 5) MIR|SINE|MIR -1059 NR_046721 100874111 Hs.704682 NR_046721 ENSG00000229867 STEAP3-AS1 - STEAP3 antisense RNA 1 ncRNA 358-66 chr11 59354623 59354976 + 2 NA Intergenic L1M2a|LINE|L1 -9660 NM_001004729 390195 Hs.553755 NM_001004729 ENSG00000176495 OR5AN1 OR11-244 olfactory receptor family 5 subfamily AN member 1 protein-coding 272-169 chr19 52789697 52789885 + 2 NA Intergenic LTR7|LTR|ERV1 -3000 NM_198457 162966 Hs.696848 NM_198457 ENSG00000189190 ZNF600 KR-ZNF1 zinc finger protein 600 protein-coding 388-115 chr14 87500963 87501245 + 2 NA Intergenic Intergenic 154190 NR_146551 105370611 Hs.691123 NR_146551 ENSG00000258770 LINC02330 - long intergenic non-protein coding RNA 2330 ncRNA 429-329 chrX 63327117 63327397 + 2 NA Intergenic ERVL-B4-int|LTR|ERVL 24075 NM_001012968 139886 Hs.612782 NM_001012968 ENSG00000186767 SPIN4 TDRD28 spindlin family member 4 protein-coding 229-314 chr5 102267270 102267437 + 2 NA intron (NM_180991, intron 3 of 12) L1MA5|LINE|L1 28931 NM_180991 353189 Hs.127648 NM_180991 ENSG00000173930 SLCO4C1 OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20 solute carrier organic anion transporter family member 4C1 protein-coding 482-13 chr1 112018315 112018643 + 2 NA Intergenic L2a|LINE|L2 27943 NR_145438 643355 Hs.279714 NR_145438 ENSG00000231437 LINC01750 - long intergenic non-protein coding RNA 1750 ncRNA 440-51 chr12 118460800 118461153 + 2 NA Intergenic Intergenic 84421 NM_022491 64426 Hs.416630 NM_022491 ENSG00000111707 SUDS3 SAP45|SDS3 SDS3 homolog, SIN3A corepressor complex component protein-coding 335-263 chr2 128331569 128331836 + 2 NA Intergenic Intergenic -12834 NM_004807 9394 Hs.512841 NM_004807 ENSG00000136720 HS6ST1 HH15|HS6ST heparan sulfate 6-O-sulfotransferase 1 protein-coding 583-106 chr21 31729892 31730424 + 2 NA intron (NM_020706, intron 1 of 19) L2a|LINE|L2 1960 NM_020706 57466 Hs.17255 NM_020706 ENSG00000156304 SCAF4 SFRS15|SRA4 SR-related CTD associated factor 4 protein-coding 255-230 chr20 31317934 31318138 + 2 NA Intergenic Intergenic -9451 NM_001037731 245930 Hs.580703 NM_001037731 ENSG00000215545 DEFB116 DEFB-16 defensin beta 116 protein-coding 423-236 chr5 162643883 162644244 + 2 NA Intergenic Intergenic 576421 NM_198904 2566 Hs.7195 NM_000816 ENSG00000113327 GABRG2 CAE2|ECA2|EIEE74|FEB8|GEFSP3 gamma-aminobutyric acid type A receptor gamma2 subunit protein-coding 237-99 chr14 47085275 47085502 + 2 NA intron (NM_001113498, intron 6 of 16) L1M5|LINE|L1 257858 NM_182830 161357 Hs.436380 NM_182830 ENSG00000139915 MDGA2 MAMDC1|c14_5286 MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 328-109 chr12 60823526 60823778 + 2 NA Intergenic Intergenic 1134282 NR_073055 9194 Hs.88156 NM_004731 ENSG00000118596 SLC16A7 MCT2 solute carrier family 16 member 7 protein-coding 358-67 chr11 63150386 63150608 + 2 NA Intergenic Intergenic -6276 NM_001136506 283238 Hs.375139 NM_173586 ENSG00000197658 SLC22A24 NET46 solute carrier family 22 member 24 protein-coding 373-196 chr2 81300391 81300665 + 2 NA Intergenic L1MEf|LINE|L1 166418 NR_110161 100507201 Hs.98589 NR_110161 ENSG00000235519 LINC01815 - long intergenic non-protein coding RNA 1815 ncRNA 331-244 chr2 13096538 13096736 + 2 NA Intergenic Intergenic -89624 NR_038434 100506474 Hs.242196 NR_038434 ENSG00000225649 LOC100506474 - uncharacterized LOC100506474 ncRNA 342-5 chr1 36967704 36968010 + 2 NA intron (NM_000831, intron 1 of 15) MIR|SINE|MIR 66658 NM_000831 2899 Hs.128848 NM_000831 ENSG00000163873 GRIK3 EAA5|GLR7|GLUR7|GluK3|GluR7a glutamate ionotropic receptor kainate type subunit 3 protein-coding 552 chr1 7331109 7331498 + 2 NA intron (NM_001349608, intron 4 of 21) intron (NM_001349608, intron 4 of 21) 58451 NR_146200 102725193 Hs.666120 NR_146199 ENSG00000237728 LOC102725193 - uncharacterized LOC102725193 ncRNA 377-113 chr14 35732983 35733285 + 2 NA intron (NM_014990, intron 12 of 40) L1PB1|LINE|L1 29797 NR_135620 107399303 Hs.742611 NR_135620 SNORA101B ZL4 small nucleolar RNA, H/ACA box 101B snoRNA 356-346 chr4 26514807 26515113 + 2 NA Intergenic Intergenic -24476 NM_000730 886 Hs.129 NM_000730 ENSG00000163394 CCKAR CCK-A|CCK1-R|CCK1R|CCKRA cholecystokinin A receptor protein-coding 207-122 chr19 44065202 44065358 + 2 NA intron (NM_013361, intron 4 of 4) intron (NM_013361, intron 4 of 4) -6879 NM_001037813 342909 Hs.445395 NM_001037813 ENSG00000186026 ZNF284 ZNF284L zinc finger protein 284 protein-coding 207-247 chr5 133545324 133545484 + 2 NA intron (NM_015082, intron 3 of 15) MSTB2|LTR|ERVL-MaLR 67137 NM_015082 23105 Hs.483390 NM_015082 ENSG00000053108 FSTL4 - follistatin like 4 protein-coding 382-109 chr14 53111055 53111290 + 2 NA intron (NM_030637, intron 1 of 11) intron (NM_030637, intron 1 of 11) 42151 NM_001160148 80821 Hs.125525 NM_030637 ENSG00000100523 DDHD1 PA-PLA1|PAPLA1|SPG28 DDHD domain containing 1 protein-coding 271-127 chr14 45617210 45617418 + 2 NA Intergenic MLT1A0-int|LTR|ERVL-MaLR 98288 NR_146547 105370479 NR_146546 ENSG00000258616 LINC02303 - long intergenic non-protein coding RNA 2303 ncRNA 402-23 chr1 238994718 238994976 + 2 NA Intergenic MER102a|DNA|hAT-Charlie -391721 NM_001347716 1131 Hs.7138 NM_000740 ENSG00000133019 CHRM3 EGBRS|HM3|PBS cholinergic receptor muscarinic 3 protein-coding 309-394 chr4 64241508 64241786 + 2 NA Intergenic L1M4|LINE|L1 167803 NM_001010874 253017 Hs.227752 NM_001010874 ENSG00000205678 TECRL CPVT3|GPSN2L|SRD5A2L2|TERL trans-2,3-enoyl-CoA reductase like protein-coding 277-435 chr8 134014564 134014730 + 2 NA Intergenic Intergenic 128151 NR_125424 101927822 Hs.129114 NR_125424 ENSG00000253593 LOC101927822 - uncharacterized LOC101927822 ncRNA 306-397 chr5 82228683 82228945 + 2 NA intron (NM_031482, intron 5 of 7) Charlie2b|DNA|hAT-Charlie 49540 NM_001025 6228 Hs.527193 NM_001025 ENSG00000186468 RPS23 BTDD|MABAS|MCINS|PAMAS|S23|uS12 ribosomal protein S23 protein-coding 291-452 chr8 87745953 87746169 + 2 NA Intergenic L1MEf|LINE|L1 127954 NM_152418 138009 Hs.371738 NM_152418 ENSG00000176566 DCAF4L2 WDR21C DDB1 and CUL4 associated factor 4 like 2 protein-coding 725-48 chr5 61325634 61326225 + 2 NA Intergenic Intergenic -6329 NM_020928 57688 Hs.744939 NM_020928 ENSG00000130449 ZSWIM6 AFND|NEDMAGA zinc finger SWIM-type containing 6 protein-coding 176-41 chr17 40096078 40096240 + 2 NA intron (NM_021724, intron 4 of 7) intron (NM_021724, intron 4 of 7) 4430 NM_021724 9572 Hs.724 NM_021724 ENSG00000126368 NR1D1 EAR1|REVERBA|REVERBalpha|THRA1|THRAL|ear-1|hRev nuclear receptor subfamily 1 group D member 1 protein-coding 425-308 chr8 109658422 109658784 + 2 NA intron (NM_001099743, intron 1 of 7) intron (NM_001099743, intron 1 of 7) -9700 NM_001099750 55638 Hs.390738 NM_017786 ENSG00000147642 SYBU GOLSYN|OCSYN|SNPHL syntabulin protein-coding 455-26 chr10 44293708 44294024 + 2 NA intron (NM_001258000, intron 2 of 2) intron (NM_001258000, intron 2 of 2) 1116 NM_001258000 100130539 Hs.694626 NM_001258000 ENSG00000277288 C10orf142 - chromosome 10 open reading frame 142 protein-coding 416-194 chr2 218098281 218098576 + 2 NA Intergenic L1PB2|LINE|L1 -26866 NM_001168298 3579 Hs.846 NM_001557 ENSG00000180871 CXCR2 CD182|CDw128b|CMKAR2|IL8R2|IL8RA|IL8RB C-X-C motif chemokine receptor 2 protein-coding 274-303 chr5 20364830 20365067 + 2 NA intron (NM_001349558, intron 1 of 15) intron (NM_001349558, intron 1 of 15) 59397 NR_146519 102725105 NR_146519 CDH18-AS1 - CDH18 antisense RNA 1 ncRNA 410-278 chr7 49258022 49258361 + 2 NA Intergenic MIRb|SINE|MIR 333644 NM_152627 168448 Hs.567757 NM_152627 ENSG00000218305 CDC14C CDC14B2|CDC14Bretro cell division cycle 14C protein-coding 350-359 chr4 99358089 99358401 + 2 NA Intergenic Intergenic -5499 NM_000669 126 Hs.654537 NM_000669 ENSG00000248144 ADH1C ADH3 alcohol dehydrogenase 1C (class I), gamma polypeptide protein-coding 335-225 chr19 57873832 57874046 + 2 NA exon (NM_001144989, exon 3 of 3) exon (NM_001144989, exon 3 of 3) 6179 NR_144562 100874260 Hs.654820 NR_144562 UBE2CP5 - ubiquitin conjugating enzyme E2 C pseudogene 5 pseudo 414-72 chr12 76736187 76736508 + 2 NA Intergenic L1PB1|LINE|L1 -27727 NM_015336 23390 Hs.4014 NM_015336 ENSG00000186908 ZDHHC17 DHHC-17|HIP14|HIP3|HSPC294|HYPH zinc finger DHHC-type containing 17 protein-coding 645-48 chr18 47620348 47620811 + 2 NA Intergenic MLT1C|LTR|ERVL-MaLR 240083 NR_039753 100616264 NR_039753 ENSG00000266582 MIR4527 - microRNA 4527 ncRNA 345-535 chr8 122424682 122424960 + 2 NA intron (NR_131202, intron 2 of 3) L1PA15|LINE|L1 143823 NR_131202 105375734 Hs.628341 NR_131202 SMILR - smooth muscle induced lncRNA, enhancer of proliferation ncRNA 494-35 chr11 31013758 31014099 + 2 NA intron (NM_001367979, intron 20 of 38) intron (NM_001367979, intron 20 of 38) -21242 NM_020869 341019 Hs.127405 NM_020869 ENSG00000170959 DCDC1 DCDC5 doublecortin domain containing 1 protein-coding